##maf version=1 scoring=roast.v3.3
a score=31812.000000
s hg38.chr6_GL000254v2_alt        0 5 +   4827813 TGGCT
s panTro5.chr6             28977033 5 + 175400573 TGGCT
i panTro5.chr6             N 0 C 0
s panPan2.chr6             29220872 5 + 173848474 TGGCT
i panPan2.chr6             N 0 C 0
s gorGor5.CYUI01015250v1    5009541 5 +   6154872 TGGCT
i gorGor5.CYUI01015250v1   N 0 C 0
s nomLeu3.chr1a            73944323 5 + 122973662 TGGCT
i nomLeu3.chr1a            N 0 C 0
s rheMac8.chr4             29158013 5 + 172585720 TGGCT
i rheMac8.chr4             N 0 C 0
s macFas5.chr4             28848027 5 - 170955103 TGGCT
i macFas5.chr4             N 0 C 0
s macNem1.NW_012011356v1    1820127 5 -   2996164 TGGCT
i macNem1.NW_012011356v1   N 0 C 0
s cerAty1.NW_012001495v1    1715254 5 -   2157725 TGGCT
i cerAty1.NW_012001495v1   N 0 C 0
s chlSab2.chr17            28164126 5 -  71996105 TGGCT
i chlSab2.chr17            N 0 C 0
s manLeu1.NW_012104165v1    1803758 5 +   2316924 TGGCT
i manLeu1.NW_012104165v1   N 0 C 0
s colAng1.NW_012115566v1    1698878 5 -   3067355 TGGCT
i colAng1.NW_012115566v1   N 0 C 0

a score=534921.000000
s hg38.chr6_GL000254v2_alt         5 64 +   4827813 GTAGGAAACC---AGGTCTTTCCCTCCCAAGGGAGGTGAACTACAAGCTTCTGTTCCACAGGAAAAC
s panTro5.chr6              28977038 64 + 175400573 GTAGGAAACC---AGGTCTTTCCCTCCCAAGGGAGGTGAACTACAAGCTTCTGTTCCACAGGAAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29220877 64 + 173848474 GTAGGAAACC---AGGTCTTTCCCTCCCAAGGGAGGTGAACTACAAGCTTCTGTTCCACAGGAAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5009546 64 +   6154872 GTAGGAAACC---AGGTCTTTCCCTCCCAAGGGAGGTGAACTACAAGCTTCTGTTCCACAGGAAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73944328 64 + 122973662 GTAGGAAACC---AGGTCTTTCCCTCCCAAGCGAAGTGAACTGCAAGCTTCTCTTCCACAGGAAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29158018 67 + 172585720 GTAGGAAACCAGAAGGTCTTTCCATCCTAAGGGAGGTGAACTACAAGTTTCTGTTCCACAGGAAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28848032 67 - 170955103 GTAGGAAACCAGAAGGTCTTTCCATCCTAAGGGAGGTGAACTACAAGTTTCTGTTCCACAGGAAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1820132 67 -   2996164 GTAGGAAACCAGAAGGTCTTTCCATCCTAAGGGAGGTGGACTACAAGTTTCTGTTCCACAGGAAAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1715259 67 -   2157725 GTAGGAAACCAGAAGGTCTTTCCCTCCTAAGGGAGGTGAACTACAAGTTTCTGTTCCACAGGAAAAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28164131 64 -  71996105 GTAGGAAACC---AGGTCTTTCCCTCCCAAGGGAGGTGAACTACAAGTTTCTGTTCCACAGGAAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1803763 67 +   2316924 GTAGGAAACCAGAAGGTCTTTCCATCCTAAGGAAGGTGAACTACAAGTTTCTGTTCCACAGGAAAAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1698883 67 -   3067355 GTAGGAAACCAGAAGTTCTTTCCCTCCCAAGGGAGGTGAACTACAAGTTTCTGTTCCACAGGAAAAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171301355 64 - 171630274 GTAGGAAACC---AGGCCTTTTCCTCCCAAGGAAAGAGAACTACAAGCTTCCGTTCCATAGGAAAAC
i calJac3.chr4             N 0 C 0
s cebCap1.NW_016108108v1      122106 64 -    373274 GTAGGAAACA---AGGCCTTTTCCTCCCAAGGAAAGAGAACTACAAGCTTCCGTTCCGAAGGAAAAC
i cebCap1.NW_016108108v1   N 0 C 0
s aotNan1.NW_018494050v1       69269 64 -    285216 GTAGGAAACC---AGGCCTTTTCCTCCCGAGGAAAGAGAACTACAAGCGTCCGTTCCATAGGAAAAC
i aotNan1.NW_018494050v1   N 0 C 0

a score=2299076.000000
s hg38.chr6_GL000254v2_alt        69 259 +   4827813 ATAACCC-TTTTTGTCCAAAACTGACACCGCTTTGAGAGCGACCAGCG----GCTTTTTCCATCTCTGAAAATAATTTTCTCAACTGTGTATTTTGAAAGTCTCGGAGTTTCGCCAGAAGCGTCTTTCGTTCGGAAAAAATTCTAAACATTCCTTC-TTTAGAGAAAGCTGAGATCACAGCGCTCCCATGACTAATGATTGGACCCA-CTTTTGCCGCCCAACCAAGATTCTATGAGTGGTGGAAATGT-AGGGGAGAATGAGGAAA
s panTro5.chr6              28977102 259 + 175400573 ATAACCC-TTTTTGTCCAAAACTGACACCGCTTTGAGAGCGACCAGCG----GCTTTTTCCATCTCTGAAAATAATTTTCTCAACTGTGGATTTTGAAAGTCTCGGAGTTTCGCCAGAAGCGTCTTTCGTTCGGACAAAATTCTAAACATTCCTTC-TTTAGAGAAAGCTGGGATCACAGCGCTCCCATGACTAATGATTGGACCCA-CTTTTGCCGCCCAACCAAGATTCTGTGAGTGATGGAAATGT-AGGGGAGAATGAGGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29220941 259 + 173848474 ATAACCC-TTTTTGTCCAAAACTGACACCGCTTTGAGAGCGACCAGCG----GCTTTTTCCATCTCTGAAAATAATTTTCTCAACTGTGGATTTTGAAAGTCTCGGAGTTTCGCCAGAAGCGTCTTTCGTTCGGACAAAATTCTAAACATTCCTTC-TTTAGAGAAAGCTGGGATCACAGCGCTCCCATGACTAATGATTGGACCCA-CTTTTGCCGCCCAACCAAGATTCTGTGAGTGATGGAAATGT-AGGGGAGAATGAGGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5009610 259 +   6154872 ATAACCA-TTTTTGTCCAAAACTGACACCGCTTTGAGAGCGACGAGCG----GCTTTTTCCATCTCTGAAAATAATTTTCTCAACTGTGGATTTTGAAAGTCTCGGAGTTTCGCCAGAAGCGTCTTTCGTTCGGACAAAATTCTAAACATTCCTTC-TTTAGAGAAAGCTGGGATCACAGCGCTCCCATGACTAATGATTGGACCCA-CTTTTGCCGCCCAACCAAGATTCTGTGAGTGGTGGAAATGT-AGCGGAGAATGAGGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73944392 260 + 122973662 ATAACCC-TTTTTGTCCAAGACTGACACCGCTTTGAGAGCGACCAGCA----GCTTTTTCCATCTCTGAAAATAATATTCTCAACTGTGGATTTTGAAAGCCTCGGAGTTTCGCCAGAAGTGTCTTTCGTTCAGAAAAAATTCTGAGCATTCCTTC-TTTAGAGAAAGCTGGGATCACAGCGCTCCCATGACTAGTGATTGAACCCACCTTTTGCCGCCCAACCAAGATTCTGTCAGTGGTGGAAATGT-AGGGGAGAATGAAGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29158085 261 + 172585720 ATAAGCC-TTTACGTCCAAGACTGACACCTCTTTGAGAGCGACCTGCG----GCTTTTTCCATCTCTGAAAATAATTTTCTCAACTGTGTATTTTGAAAGTCTCGGAATTTCGCCAAAAGCGTCTTTCTTTCGGACAAAATTCTAAACATTCCTTC-TTTAGAGAAAGCTGGGATCACAGCGCTCCCATGACTAGTGATTGGACCCACCTTTTGCCGCCCAACCAAGATTCTGTGAGTGGTGGAAATGTAAGGGGAGTATGAGGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28848099 261 - 170955103 ATAAGCC-TTTACGTCCAAGACTGACACCTCTTTGAGAGCGACCTGCG----GCTTTTTCCGTCTCTGAAAATAATTTTCTCAACTGTGTATTTTGAAAGTCTCGGAATTTCGCCAAAAGCGTCTTTCTTTCGGACAAAATTCTAAACATTCCTTC-TTTAGAGAAAGCTGGGATCACAGCGCTCCCATGACTAGTGATTGGACCCACCTTTTGCCGCCCAACCAAGACTCTGTGAGTGGTGGAAATGTAAGGGGAGTATGAAGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1820199 261 -   2996164 ATAAGCC-TTTACGTCCAAGACTGACACCTCTTTGAGAGCGACCTGCG----GCTTTTTCCATCTCTGAAAATAATTTTCTCAACTGTGTATTTTGAAAGTCTCGGAATTTCGCCAAAAGCATCTTTCTTTCGGACAAAATTCTAAACATTCCTTC-TTTAGAGAAAGCTGGGATCACAGCGCTCCCATGACTAGTGATTGGACCCACCTTTTGCCGCCCAACCAAGATTCTGTGAGTGGTGGAAATGTAAGGGGAGTATGAGGAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1715326 261 -   2157725 ATAACCC-TTTACGTCCAAGACTGACACCGCTTTGAGAGCGACCTGCG----GCTTTTTCCATCTCTGAAAATAATTTTCTCAACTGTGTATTTTGAAAGTCTCGGAATTTCGCCAAAAGCGTCTTTCTTTCGGACAAAATTCTAAACATTCCTTC-TTTAGAGAAAGCTGGGATCACAGCGCTCCCATGACTAGTGATTGGACCCACCTTTTGCCGCCCAACCAAGATTCTGTGAGTGGTGGAAATGTAAGGGGAGTATGAGGAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28164195 261 -  71996105 ATAACCC-TTTATGTCCAAGACTGACACCGCTTTGAGAGCGACCTGCG----GCTTTTTCCATCTCTGAAAATAATTTTCTCAACTGTGTATTTTGAAAGTCTCGGAATTTCGCCAAAAGCGTCTTTCTTTCGAACAAAATTCTAAACATTCCTTC-TTTAGAGAAAGCTGGGATCACAGTGCTCCCATGACTAGTGATTGGACCCACCTTTTGCGGCCCAACCAAGATTCTGTGAGTGGTGGAAATGTAAGGGGAGTATGAGGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1803830 261 +   2316924 ATAACCC-TTTACGTCCAAGACTGACACCTCTTTGAGAGCGACCTGCG----GCTTTTTCCATCTCTGAAAATAATTTTCTCAACTGTGTATTTTGAAAGTCTCGGAATTTCGCCAAAAGCGTCTTTCTTTCGGACAAAATTCTAAACATTCCTTC-TTTAGAGAAAGCTGGGATCACAGCGCTCCCATGATTAGTGATTGGACCCACCTTTTGCCGCCCAACCAAGATTCTGTGAGTGGTGGAAATGTAAGGGGAGTATGAGGAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1698950 261 -   3067355 ATAACCC-TTTATGTCCAAGATTGACACCGCTTTGAGAGCGACCAGCG----GCTTTTTCCATCTCTCAAAATAATTTTCTCAACTGTGTATTTTGAAAGTCTCGGAATTTCGCCACAAGTGTCTTTCTTTCGGACAAAATTCGAAACATTCCTTC-TTTAGAGAAAGCTGGGATCACAGCGCTCTCATGACTAGTGATTGCATCCACCTTTTGTCGCCCAACCAAGATTCTGTGAGTGGTGGAAATGTAAGGGGAGTATGAGGAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171301419 257 - 171630274 AGGACCC-ATTTTGTCCAAGACGGGCACCGCTTTGAGAGCGAGGAGCA----GCTTTTTCCATCTCTGAAACTAATTTTCTCTACCGTGGATTTTGAAAACCTCGAAGTTTCGCCAGAAGCGTTTTTCTTTCGGACAAAACTCTAAACATTCCTTC-TCTAGGGAAAGCTG-GATCACAGCGCTCCCATGACTGGGCTTTTGACCGCCCTTTCGCCGCCCAACCAACATTCTCT--GTCGTGGAAATGG-AGGGGAGAATGCGGAAA
i calJac3.chr4             C 0 I 27
s cebCap1.NW_016108108v1      122170 257 -    373274 ATGACTT-TTTTTGTCCAAGACGGACACCGCTTTGAGAGCGACTAGCC----GCTTTTTCCATCTCTGAAAATAATTTTCTCTACTGTGGATTTTGAAATCCTCGAAGTTTCTCCAGAAGCGTTTTTCTTTCGGACAAAATTCTAAACATTCCTTC-TCTAGAGAAAGCTG-GATCACAGCGCTCCCACGACTGGTGATTGGACCGCCCTTTCGCCGCCCAACGAAGATTCTGT--GTCGTGGAAATGG-AGGGGAGAATGGGGAAA
i cebCap1.NW_016108108v1   C 0 I 76
s aotNan1.NW_018494050v1       69333 256 -    285216 ACGACCCTTTTTTGTCCAAGACGGACACCGCGTTGAGAGCGACTAGCG----GCTTTTTCCATATCTGAAAATAATTTTCTCTACTGTGGATTTTGAAAGCCTCGAAGTTTCGCCAGAAGCGTTTTTCTTTCAGACAAAATTCTAAACATTCCTTC-TCTAGAGAAAGCTG-GATCACAGCGCTCCCATGAC--GTGATTAGACCGCCCTTTCACCACCCAACCAAGATTCTGT--GTCGTGGAAACGG-AGGGGAGAATGGGGAAA
i aotNan1.NW_018494050v1   C 0 I 75
s otoGar3.GL873742           1465440 262 -   2232465 ACAACCC-TTCTTGCCTGAGAGTAACATGGCTTTGAGTGCAACTAGCGAGCTGCTCTTTTCATCTCTGAAA-TAATTGTCTCAAATTTGGGTTTTAGAAGCCTCTGAGTTTCTCAAGAACCATCTTTCCCTTGAACAGCATACTAAACATTCCTTCACCTAGCAAAAGCTGGGATAAGAA-GCACCAATGACTGGTGATAAGACT-ACGGATTGCCAGCTAACCAAAATTCTGTGTGTGGTGGAAATGC-AGAGGTGAATAGGAAAG
i otoGar3.GL873742         N 0 C 0

a score=6116.000000
s hg38.chr6_GL000254v2_alt       328  3 +   4827813 -------------------------------------GGT
s panTro5.chr6              28977361  3 + 175400573 -------------------------------------GGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221200  3 + 173848474 -------------------------------------GGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5009869  3 +   6154872 -------------------------------------GGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73944652  3 + 122973662 -------------------------------------GTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29158346  3 + 172585720 -------------------------------------GGT
i rheMac8.chr4             C 0 I 3
s macFas5.chr4              28848360  3 - 170955103 -------------------------------------GGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1820460  3 -   2996164 -------------------------------------GGT
i macNem1.NW_012011356v1   C 0 I 3
s cerAty1.NW_012001495v1     1715587  3 -   2157725 -------------------------------------GGT
i cerAty1.NW_012001495v1   C 0 I 3
s chlSab2.chr17             28164456  3 -  71996105 -------------------------------------GGT
i chlSab2.chr17            C 0 I 6
s manLeu1.NW_012104165v1     1804091  3 +   2316924 -------------------------------------GGT
i manLeu1.NW_012104165v1   C 0 I 3
s colAng1.NW_012115566v1     1699211  3 -   3067355 -------------------------------------GGT
i colAng1.NW_012115566v1   C 0 I 3
s calJac3.chr4             171301703  3 - 171630274 -------------------------------------AGT
i calJac3.chr4             I 27 C 0
s otoGar3.GL873742           1465702 40 -   2232465 GAAAGGAACGGAAAACAAGAAAGGAAAATTTCTCCTAAGT
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       69589 75 -    285216 I
e cebCap1.NW_016108108v1      122427 76 -    373274 I

a score=27857.000000
s hg38.chr6_GL000254v2_alt       331 38 +   4827813 CTGTAGTCTGT---------CAGATATGGGTGGAGTGGGGGTGGGGG
s panTro5.chr6              28977364 38 + 175400573 CTGTAGTCTGT---------CAGATATGGGTGGAGTGGGGGTGGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221203 38 + 173848474 CTGTAGTCTGT---------CAGATATGGGTGGAGTGGGGGTGGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5009872 38 +   6154872 CTGTGGTCTGT---------CAGATATGGGTGGAGTGGGGGTGGGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73944655 38 + 122973662 CTGTAGTCTAT---------CAGATATGGGTGGAGTAGGGGTGGGAG
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28848363  3 - 170955103 ---------------------------------------GGC-----
i macFas5.chr4             C 0 C 0
s calJac3.chr4             171301706 45 - 171630274 CTTCAGTCTGCCCATCCACACAGACACGGGCGGGGCGGGGGTGGC--
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1465742 30 -   2232465 CTACAATCTGTCCATTGACACAGATAAGGG-----------------
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       69589 75 -    285216 I
e cebCap1.NW_016108108v1      122427 76 -    373274 I
e colAng1.NW_012115566v1     1699214  3 -   3067355 I
e manLeu1.NW_012104165v1     1804094  3 +   2316924 I
e chlSab2.chr17             28164459  6 -  71996105 I
e cerAty1.NW_012001495v1     1715590  3 -   2157725 I
e macNem1.NW_012011356v1     1820463  3 -   2996164 I
e rheMac8.chr4              29158349  3 + 172585720 I

a score=10920.000000
s hg38.chr6_GL000254v2_alt       369 2 +   4827813 GG-
s panTro5.chr6              28977402 2 + 175400573 GG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221241 2 + 173848474 GG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5009910 2 +   6154872 GG-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73944693 2 + 122973662 GG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29158352 2 + 172585720 GG-
i rheMac8.chr4             I 3 I 1
s macFas5.chr4              28848366 2 - 170955103 GG-
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     1820466 2 -   2996164 GG-
i macNem1.NW_012011356v1   I 3 I 1
s cerAty1.NW_012001495v1     1715593 2 -   2157725 GG-
i cerAty1.NW_012001495v1   I 3 I 1
s manLeu1.NW_012104165v1     1804097 2 +   2316924 GG-
i manLeu1.NW_012104165v1   I 3 I 1
s colAng1.NW_012115566v1     1699217 2 -   3067355 GG-
i colAng1.NW_012115566v1   I 3 I 1
s calJac3.chr4             171301751 2 - 171630274 GG-
i calJac3.chr4             C 0 I 1
s aotNan1.NW_018494050v1       69664 2 -    285216 GG-
i aotNan1.NW_018494050v1   I 75 I 1
s otoGar3.GL873742           1465772 2 -   2232465 -GT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      122427 76 -    373274 I
e chlSab2.chr17             28164459 6 -  71996105 I

a score=368306.000000
s hg38.chr6_GL000254v2_alt       371 46 +   4827813 GGAGGAGAGAAATCTAATGGATGTTTTCCAAGGGCGA--TTTTTTTTT--
s panTro5.chr6              28977404 45 + 175400573 G-AGGAGAGAAATCTATTGGATGTTTTCCAAGGGCGA--TTTTTTTTC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221243 45 + 173848474 G-AGGAGAGAAATCTATTGGATGTTTTCCAAGGGCGA--TTTTTTTTT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5009912 44 +   6154872 --AGGAGAGAAATCTAATGGATGTTTTCCAAGGGCGA--TTTTTTTTT--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73944695 43 + 122973662 --AGGAGAGAAATCTAATGGATGTTTTCCAAGAGCGA--TTTTTTTT---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29158355 45 + 172585720 G-AGGAGAGAAATCTAATGGATGTTTTTCAAGGGCAA--TTTTGTTTT--
i rheMac8.chr4             I 1 I 1
s macFas5.chr4              28848369 45 - 170955103 G-AGGAGAGAAATCTAATGGATGTTTTTCAAGGGCAA--TTTTGTTTT--
i macFas5.chr4             I 1 I 1
s macNem1.NW_012011356v1     1820469 45 -   2996164 G-AGGAGAGAAATCTAATGGATGTTTTTCAAGGGCAA--TTTTGTTTT--
i macNem1.NW_012011356v1   I 1 I 1
s cerAty1.NW_012001495v1     1715596 45 -   2157725 A-AGGAGAGAAATCTAATGGATGTTTTTCAAGGGCGA--TTTTGTTTT--
i cerAty1.NW_012001495v1   I 1 I 31
s chlSab2.chr17             28164465 45 -  71996105 G-AGGAGAGAAATCTAATGGATGTTTCCCAAGGACGA--TTTTGTTTT--
i chlSab2.chr17            I 6 I 35
s manLeu1.NW_012104165v1     1804100 45 +   2316924 G-AGGAGAGAAATCTAATGGATGTTTTTCAAAGGCAA--TTTTGTTTT--
i manLeu1.NW_012104165v1   I 1 I 17
s colAng1.NW_012115566v1     1699220 45 -   3067355 G-AGGAGAGAAATCTAATGGATGTTTTCCAAGGACGA--TTTTGTTTT--
i colAng1.NW_012115566v1   I 1 I 35
s calJac3.chr4             171301754 47 - 171630274 G-AGGAGAGAAATCTAAAGAATTTTTTCCAAGGGCGATTTTTTTTTTT--
i calJac3.chr4             I 1 C 0
s cebCap1.NW_016108108v1      122503 45 -    373274 G-AGGAGAGAAATCTAAAGCATTTTTTCCAAGGGCGA--CTTTTTTTT--
i cebCap1.NW_016108108v1   I 76 C 0
s aotNan1.NW_018494050v1       69667 45 -    285216 G-AGGAGAGAAATCTAAAGAATTTTTTCCAAGGGCGA--CTTTTTTTC--
i aotNan1.NW_018494050v1   I 1 C 0
s otoGar3.GL873742           1465774 44 -   2232465 G-GAAGGAGAAATCTAAAGAAAATTTTCCAAGAG-----TCTTTTACCGC
i otoGar3.GL873742         C 0 C 0

a score=56300.000000
s hg38.chr6_GL000254v2_alt       417 13 +   4827813 CTTCTCTTTCTGT
s panTro5.chr6              28977449 13 + 175400573 CTTCTCTTTCTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221288 13 + 173848474 CTTCTCTTTCTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5009956 13 +   6154872 CTTCTCTTTCTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73944738 13 + 122973662 CTTCTCTTTCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29158401 13 + 172585720 CTTTTCTGTCTTC
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              28848415 13 - 170955103 CTTTTCTGTCTTC
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     1820515 13 -   2996164 CTTTTCTGTCTTC
i macNem1.NW_012011356v1   I 1 C 0
s calJac3.chr4             171301801 13 - 171630274 CTTCTCTTTCTGT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      122548 13 -    373274 CTTCTCTTTTTGT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       69712 13 -    285216 CTTCTCTTTTTGT
i aotNan1.NW_018494050v1   C 0 I 25
s otoGar3.GL873742           1465818 13 -   2232465 CTTCTCTTTCCAC
i otoGar3.GL873742         C 0 C 0
e colAng1.NW_012115566v1     1699265 35 -   3067355 I
e manLeu1.NW_012104165v1     1804145 17 +   2316924 I
e chlSab2.chr17             28164510 35 -  71996105 I
e cerAty1.NW_012001495v1     1715641 31 -   2157725 I

a score=-20326.000000
s hg38.chr6_GL000254v2_alt       430 5 +   4827813 --TTTTT
s panTro5.chr6              28977462 5 + 175400573 --TTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221301 5 + 173848474 --TTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5009969 5 +   6154872 --TTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73944751 3 + 122973662 --GTT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29158414 3 + 172585720 --CCA--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28848428 3 - 170955103 --CCA--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1820528 3 -   2996164 --CCA--
i macNem1.NW_012011356v1   C 0 C 0
s calJac3.chr4             171301814 2 - 171630274 -----CT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      122561 2 -    373274 -----CT
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1465831 5 -   2232465 TTTTT--
i otoGar3.GL873742         C 0 I 22
e aotNan1.NW_018494050v1       69725 25 -    285216 I
e colAng1.NW_012115566v1     1699265 35 -   3067355 I
e manLeu1.NW_012104165v1     1804145 17 +   2316924 I
e chlSab2.chr17             28164510 35 -  71996105 I
e cerAty1.NW_012001495v1     1715641 31 -   2157725 I

a score=638.000000
s hg38.chr6_GL000254v2_alt       435 5 +   4827813 ATTC---C
s panTro5.chr6              28977467 5 + 175400573 ATTT---C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221306 5 + 173848474 ATTT---C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5009974 5 +   6154872 ATTT---C
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chr4             171301816 8 - 171630274 CTTCCCCC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      122563 8 -    373274 CTTCCCCC
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1465836 22 -   2232465 I
e aotNan1.NW_018494050v1       69725 25 -    285216 I
e colAng1.NW_012115566v1     1699265 35 -   3067355 I
e manLeu1.NW_012104165v1     1804145 17 +   2316924 I
e chlSab2.chr17             28164510 35 -  71996105 I
e cerAty1.NW_012001495v1     1715641 31 -   2157725 I
e macNem1.NW_012011356v1     1820531 0 -   2996164 C
e macFas5.chr4              28848431 0 - 170955103 C
e rheMac8.chr4              29158417 0 + 172585720 C
e nomLeu3.chr1a             73944754 0 + 122973662 C

a score=9100.000000
s hg38.chr6_GL000254v2_alt       440 1 +   4827813 C
s panTro5.chr6              28977472 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221311 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5009979 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73944754 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29158417 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28848431 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1820531 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1715672 1 -   2157725 C
i cerAty1.NW_012001495v1   I 31 C 0
s chlSab2.chr17             28164545 1 -  71996105 C
i chlSab2.chr17            I 35 C 0
s manLeu1.NW_012104165v1     1804162 1 +   2316924 C
i manLeu1.NW_012104165v1   I 17 C 0
s calJac3.chr4             171301824 1 - 171630274 C
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      122571 1 -    373274 C
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       69750 1 -    285216 C
i aotNan1.NW_018494050v1   I 25 C 0
e otoGar3.GL873742           1465836 22 -   2232465 I
e colAng1.NW_012115566v1     1699265 35 -   3067355 I

a score=26658.000000
s hg38.chr6_GL000254v2_alt       441 3 +   4827813 CCC
s panTro5.chr6              28977473 3 + 175400573 CCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221312 3 + 173848474 CCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5009980 3 +   6154872 CCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73944755 3 + 122973662 CCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29158418 3 + 172585720 CCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28848432 3 - 170955103 CCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1820532 3 -   2996164 CCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1715673 3 -   2157725 CCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28164546 3 -  71996105 CCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1804163 3 +   2316924 CCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1699300 3 -   3067355 ccc
i colAng1.NW_012115566v1   I 35 C 0
s calJac3.chr4             171301825 3 - 171630274 TCC
i calJac3.chr4             C 0 I 8
s cebCap1.NW_016108108v1      122572 3 -    373274 GCC
i cebCap1.NW_016108108v1   C 0 I 4
s aotNan1.NW_018494050v1       69751 3 -    285216 CCC
i aotNan1.NW_018494050v1   C 0 I 1
e otoGar3.GL873742           1465836 22 -   2232465 I

a score=327146.000000
s hg38.chr6_GL000254v2_alt       444 33 +   4827813 C-GATTTCTTAATAGTAATGAGAAACGGCAGCAA
s panTro5.chr6              28977476 34 + 175400573 CTGATTTCTTAATAGTAATGAGAAACGGCAGCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221315 34 + 173848474 CTGATTTCTTAATAGTAATGAGAAACGGCAGCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5009983 33 +   6154872 C-GATTTCTTAATAGTAATGAGAAACGGCAGCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73944758 34 + 122973662 CTGATTTCTTAATACTAATGAGAAACGGCAGCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29158421 33 + 172585720 C-GATTTCTTAATAGTATTGAGAAACGGCAGCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28848435 33 - 170955103 C-GATTTCTTAATAGTATTGAGAAACGGCAGCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1820535 33 -   2996164 C-GATTTCTTAATAGTATTGAGAAACGGCAGCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1715676 33 -   2157725 C-GATTTCTTAATAGTATTGAGAAACGGCAGCAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28164549 33 -  71996105 C-GATTTCTTAATAGTATTGAGAAACGGCAGCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1804166 33 +   2316924 C-GATTTCTTAATAGTATTGAGAAACGGCAACAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1699303 33 -   3067355 c-GATTTCTTAATAGTATTGAGAAACGGCAGCAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171301836 33 - 171630274 C-GACTTCTTAATAGTAATGAGAAACAGCAGCAA
i calJac3.chr4             I 8 C 0
s saiBol1.JH378348            119656 33 -    375362 C-GACTTCTTAATAGTAATGAGAAACTGCAGCAA
i saiBol1.JH378348         N 0 C 0
s cebCap1.NW_016108108v1      122579 33 -    373274 C-GACTTCTTAATAGTAATGAGAAACGGCAGCAA
i cebCap1.NW_016108108v1   I 4 C 0
s aotNan1.NW_018494050v1       69755 33 -    285216 C-GACTTCTTAATAGTAATGAGAAACGGCAGCAA
i aotNan1.NW_018494050v1   I 1 C 0
e otoGar3.GL873742           1465836 22 -   2232465 I

a score=9960.000000
s hg38.chr6_GL000254v2_alt       477 7 +   4827813 AGGAGAA
s panTro5.chr6              28977510 7 + 175400573 AGGAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221349 7 + 173848474 AGGAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5010016 7 +   6154872 AGGAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73944792 7 + 122973662 AGGAGAA
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1     1699336 7 -   3067355 AGGAGAA
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            119689 0 -    375362 C
e otoGar3.GL873742           1465836 22 -   2232465 I
e aotNan1.NW_018494050v1       69788 0 -    285216 C
e cebCap1.NW_016108108v1      122612 0 -    373274 C
e calJac3.chr4             171301869 0 - 171630274 C
e manLeu1.NW_012104165v1     1804199 0 +   2316924 C
e chlSab2.chr17             28164582 0 -  71996105 C
e cerAty1.NW_012001495v1     1715709 0 -   2157725 C
e macNem1.NW_012011356v1     1820568 0 -   2996164 C
e macFas5.chr4              28848468 0 - 170955103 C
e rheMac8.chr4              29158454 0 + 172585720 C

a score=195053.000000
s hg38.chr6_GL000254v2_alt       484 241 +   4827813 CGAGTCtttttttttttttttttttttt-ttgtgatggagtcttgctcagtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctcagcctcccgggtttatgcaattctcctgtctcagcctctggagtagctgggactacaggtgcccgccaccacgcccggctaattttttttttttttt-------gtatttttagtagagatggggtttcaccatgttagccaggatggtct
s panTro5.chr6              28977517 238 + 175400573 CGAGTCttttttttttttttttttt------gtgatggagtcttgctcagtcgcccaggctggagtgcagtggcgcgatctaggctcactgcaagctcagcctcccgggtttatgcaattctcctgtctcagcctctggagtagctgggactacaggtgcccgccaccacgcccggctaattttttttttttttt-----ttgtatttttagtagagatggggtttcaccatgttagccaggatggtct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221356 229 + 173848474 CGAGttttttttttttttttt----------gtgatggagtcttgctcagtcgcccaggctggagtgcagtggcgcgatctaggctcactgcaagctcagcctcccgggtttatgcaattctcctgtctcagcctctggagtagctgggactacaggtgcccgccaccacgcccggctaatttttttttttt----------gtatttttggtagagatggggtttcaccatgttagccaggatggtct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5010023 249 +   6154872 CGAGTCttttttttttttttttttttttcctgtgacggagtcttgctcagtctcccgggctggagtgcagaggcgcgatctcggctcactgcaagctcagcctcccgggtttatgcaattctcctgtctcagcctccggagtagctgggactacaggtgcccgccaccacgcccggctaattttttttttttttttttttttgtatttttagtagagatggggtttcaccatgttagccaggatggtct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73944799 241 + 122973662 CGAGTCttttttttttttttttttttttt--gagacggagtcttggtcagccgcccaggctggagtgcagtggagcgatctcggctcactgcaagctcagcctcctgggttcatacaattctcctgcctcagcctcccgaggagctgggactacaggtgcccgccaccacgcccggataattttttttttttttt------tgtatttttagtacagttagggtttcaccatgttagccaggatggtct
i nomLeu3.chr1a            C 0 C 0
e saiBol1.JH378348            119689   0 -    375362 C
e otoGar3.GL873742           1465836  22 -   2232465 I
e aotNan1.NW_018494050v1       69788   0 -    285216 C
e cebCap1.NW_016108108v1      122612   0 -    373274 C
e calJac3.chr4             171301869   0 - 171630274 C
e colAng1.NW_012115566v1     1699343   0 -   3067355 C
e manLeu1.NW_012104165v1     1804199   0 +   2316924 C
e chlSab2.chr17             28164582   0 -  71996105 C
e cerAty1.NW_012001495v1     1715709   0 -   2157725 C
e macNem1.NW_012011356v1     1820568   0 -   2996164 C
e macFas5.chr4              28848468   0 - 170955103 C
e rheMac8.chr4              29158454   0 + 172585720 C

a score=66362.000000
s hg38.chr6_GL000254v2_alt       725 8 +   4827813 A-GGAGAAC
s panTro5.chr6              28977755 8 + 175400573 A-GGAGAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221585 8 + 173848474 A-GGAGAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5010272 9 +   6154872 AGGGAGAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73945040 8 + 122973662 A-GGAGAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29158454 8 + 172585720 A-GGAGAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28848468 8 - 170955103 A-GGAGAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1820568 8 -   2996164 A-GGAGAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1715709 8 -   2157725 A-GGAGAAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28164582 8 -  71996105 A-GGAGAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1804199 8 +   2316924 A-GGAGAAC
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171301869 8 - 171630274 A-GGAGAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            119689 8 -    375362 A-GGAGAAC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      122612 8 -    373274 A-GGAGAAC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       69788 8 -    285216 A-GGAGATC
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1465836 22 -   2232465 I
e colAng1.NW_012115566v1     1699343 0 -   3067355 C

a score=60148.000000
s hg38.chr6_GL000254v2_alt       733 6 +   4827813 GAGTCT
s panTro5.chr6              28977763 6 + 175400573 GAGTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221593 6 + 173848474 GAGTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5010281 6 +   6154872 GAGTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73945048 6 + 122973662 GAGCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29158462 6 + 172585720 GAGTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28848476 6 - 170955103 GAGTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1820576 6 -   2996164 GAGTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1715717 6 -   2157725 GAGTCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28164590 6 -  71996105 GAGTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1804207 6 +   2316924 GAGTCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1699343 6 -   3067355 GAGTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171301877 6 - 171630274 CAGTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            119697 6 -    375362 GAGCCT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      122620 6 -    373274 GGGTCT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       69796 6 -    285216 GAGTCT
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1465836 22 -   2232465 I

a score=2260654.000000
s hg38.chr6_GL000254v2_alt       739 219 +   4827813 TCTATGACCGGCATGCCTGTTGCTTCACTCTCAGGGGATCTTGAATAAGCAGCTTCTCTATTTCAGTAAATAACTATAAAGCTGTGCTGAAG--------------------------------------------CAGTCAGGTTGGGAGGCTGAAGGAGTGTTAGGACCCATA---GTACAAATGAATGAGTACCAAATGGCTTACCTTCGCTGTGAGTAG-GAAAAACACAAGCT--AGTGTATGCACAAAGAAAAAAGAAAAGAC
s panTro5.chr6              28977769 219 + 175400573 TCTATGACCGGCATGCCTGTTGCTTCACTCTCAGGGGACCTTGAATAAGCAGCTTCTCTATTTCAGTAAATAACTATAAAGCTGTGCTGAAG--------------------------------------------CAGTCAGGTTGGGAGGCTGAAGGAGTGTTAGGACCTATA---GTACAAATGAATGAGTACCAAATGGCTTACCTTCGCTGTGAGTAG-GAAAAACACAAGCT--AGTGTATGCACAAAGAAAAAAGAAAAGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221599 219 + 173848474 TCTATGACCGGCATGCCTGTTGCTTCACTCTCAGGGGATCTTGAATAAGCAGCTTCTCTATTTCAGTAAATAACTATAAAGCTGTGCTGAAG--------------------------------------------CAGTCAGGTTGGGAGGCTGAAGGAGTGTTAGGACCTATA---GTACAAATGAATGAGTACCAAATGGCTTACCTTCGCTGTGAGTAG-GAAAAACACAAGCT--AGTGTATGCACAAAGAAAAAAGAAAAGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5010287 219 +   6154872 TCTATGGCCGGCATGCCTGTTGCTTCACTCTCAGGGGATCTTGAATAAGCAGCTTCTCTATTTCAGTAAATAACTATAAAGCTGTGCTGAAG--------------------------------------------CAGTCAGGTTGGGAGGCTGAAGGAGTGTTAGGACCCACA---GCACAAATGAATGAGTACCAAATTGCTTACCTTCGCTGTGAGTAG-GAAAAACACAAGCT--AGTGTATGCACAAAGAAAAAAGAAAAGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73945054 263 + 122973662 TTTATGGCCGGCATGCCTGTTGCTTCACCATCAGGGGATCTTGAAAAAGCAGATTCTCTATTTCAGTAAATGACTATAAAGCTGTGCTGAAGAAGTCAGATTGGGAAGCTGAAGGAGTGTTAGGACCCATAGTACAAAGTCAGATTGGGAGGCTGAAGGAGTGTTAGGACCCATA---GTACAAATGAATGAGTACCAAATGGCTTACCTTTGCTGTGAGTAG-GAAAAACACAAGCT--AGGGTATGCGCAAAGAAAAAAGAAAAGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29158468 219 + 172585720 TACATGGCCGGCATGCCTGTTGCTTCACTGTCAGGGGATCTTGAATAAGCAGCTTCTCTATTTCAGTAAATGACTATAAAGCTGTGCTGAAG--------------------------------------------CAGTCAGGTTGGGAGGCTGAAGGGGTGTTAGGACCCATA---GTACAAATGAATGACTACCAAATGGCTTACCTTCTCTGTGAGTAG-AAAAAACACAAGCT--AGGGTATGCACAAAGGAAAAAGAAAAGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28848482 219 - 170955103 TATATGGCCGGCATGCCTGTTGCTTCACTGTCAGGGGATCTTGAATAAGCAGCTTCTCTATTTCAGTAAATGACTATAAAGCTGTGCTGAAG--------------------------------------------CAGTCAGGTTGGGAGGCTGAAGGGGTGTTAGGACCCATA---GTACAAATGAATGACTACCAAATGGCTTACCTTCTCTGTGAGTGG-AAAAAACACAAGCT--AGGGTATGCACAAAGGAAAAAGAAAAGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1820582 219 -   2996164 TATATGGCCGGCATGCCTGTTGCTTCACTGTCAGGGGATCTTGAATAAGCAGCTTCTCTATTTCAGTAAATGACTATAAAGCTGTGCTGAAG--------------------------------------------CAGTCAGGTTGGGAGGCTGAAGGGGTGTTAGGACCCATA---GTACAAATGAATGACTACCAAATGGCTTACCTTCTCTGTGAGTAG-AAAAAACACAAGCT--AGGGTATGCACAAAGGAAAAAGAAAAGAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1715723 219 -   2157725 TATATGGCTGGCATGCCTGTTGCTTCACTATCAGGGGATCTTGAATAAGTAGCTTCTCTACCTCAGTAAATGACTATAAAGCTGTGCTGAAG--------------------------------------------CAGTCAGGTTGGGAGGCTGAAGGAGTGTTAGGACCCATA---GTACAAATGAATGACTACCAAATGGCTTACCTTCTCTGTGAGTAG-AAAAAACACAAGCT--AGGGTATGCACAAAGGAAAAAGAAAAGAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28164596 219 -  71996105 TACATGGCCGGCATGCCTGTTGCTTCACTGTCAGGGTATCTTGAATAAGCAGCTTCTCTATTTCAGTAAATGACTATAAAGCTGTGCTGAAG--------------------------------------------CAGTCAGGTTGGGAGGCTGAAGGAGTGTTAGGACCCATA---GTACAAACGAATGACTACCAAATGGCTTACCTTTTCTGTGAGTAG-AAAAAACACAAGCT--AGGGTATGCACAAAGGAAAAAGAAAAGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1804213 219 +   2316924 TATATGGCCGGCATGCCTGTTGCTTCACTGTCAGGGGATCTTGAATAAGCAGCTTCTCTATTTCAGTAAATGACTATAAAGCTGTGCTGAAG--------------------------------------------CAGTCAGGTTGGGAGGCTGAAGGGGTGTTAGGACCCATA---GTACAAATGAATGACTACCAAATGGCTTACCTTCTCTGTGAGTAG-AAAAAACACAAGCT--AGGGTATGCACAAAGGAAAAAGAAAAGAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1699349 220 -   3067355 TATATGGCCGGCATGCCTGTTGCTTCACTGTCAGGGGATCTTGAATAAGCAGCTTCTCTATTTCAGTAAATGACTACAAAGCTGTGCTGAAG--------------------------------------------CAGTCAGGTTGGGAGGCTGAAGGAGTGTTAGGACCCATA---GTACAAATGAATGACTACCAAATGGCTTACCTTCTCTGTGAGTAGAAAAAAACACAAGGT--AATATATGCACAAAGAAAAAAGAAAGGAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171301883 217 - 171630274 TCTGTGGCTGGCAAGCCTGTTGCTTCACTGTCAGGGGATTCTGAATAAGCAGCTTCTCTGTTTCGGTACATGACT--AACGCTGTGCTGGAG--------------------------------------------CAGCCAGGTTGGGAGGCTGAAGAATTGTTAGGACCCATA---GTACAAAGGAATGAGTACCAAATGGTTTACCTTCGCTGCGAGGAG-GAAAAACACAAGCT--AGGGTATGCACAAAGAAAAATGAGAAGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            119703 217 -    375362 TCTGCGGCTGGCAAGCCTGTTGCTTCGCTGACAGGGGATTCTGAACAAGCAGCTTCTCTATTTCGGTAAATGACC--AACGCTGTGCTTCAG--------------------------------------------CAGTCAGGTTGGGAGGCTAAAGGAATGTTAGGACCCATA---GTACAAATGAATGAGTACCAGATGGTTTACCTTCCCTGTGAGGAG-GAAAAACACAAGCT--AGGGTATGCACAAGGAAAAATGAGAAGAC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      122626 217 -    373274 TCTGTGGCTGGCATGCCTGTTGCTTCGCTGTGAGGGGATTCTGAATAAGCAGCTTCTCTATTTCGGTAAATGACT--AATGCTGTGCTGAAG--------------------------------------------CAGTCAGGTTGGGAGGCTGAAGGAATGTTAGGACCCATA---GTACAAATGAATGAGTACCAAATGGTTTACCTTCGCTGTGAGGAG-GAAAAACACAAGCT--AGCGTTTGCACAAAGAAAAATGAGAAGAC
i cebCap1.NW_016108108v1   C 0 I 28
s aotNan1.NW_018494050v1       69802 217 -    285216 TCTGTGGCTGGCAAGCCTGTTGCTTCACTGTCAGGGGATTCTGAATAAGCAGCTTCTCTATTTCGGTAAATGACT--AACGCTGTGCTGAAG--------------------------------------------CAGTCAGGTTGGGAGGCTGAAGGAATGTTAGGACCCATA---GTACAAATGAATTAGTACCAAATGGTTTACCTTCGCTGTGAGGAG-GAAAAACACAAGCT--AGGGTATGCACAAAGAAAAACGAGAAGAT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1465858 218 -   2232465 TTTATGGCTGGCATGCTTGTTACTTCATGTCCAGGTGATCCTGAGTAAGCTG--TTTTTATTTCTGTAAAGGAGTTCA---TCAGACTGAAA--------------------------------------------TATTCAGGTTCAAAGGCTCAAGGGGAGTCAGGGCCCATAATGATGCAAATGAATAAGCACCAAATGATTTGCCTTCACTGTTAGTGGGGAAAAACATAAGATAGAGGGTGTACACAACACAAAAAGAAAAG--
i otoGar3.GL873742         I 22 C 0

a score=190400.000000
s hg38.chr6_GL000254v2_alt       958 40 +   4827813 TGGAACT--------------AAGTATTCAAAGACTGAAACGA-----AATGTTCAACG
s panTro5.chr6              28977988 40 + 175400573 TGAAACG--------------AAGTATTCAAAGACTGAAACGA-----AACGTTCAACG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221818 40 + 173848474 TGAAACG--------------AAGTATTCAAAGACTGAAACGA-----AACGTTCAACG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5010506 40 +   6154872 TGAAACG--------------AAGTATTCAAAGACTAAAATGA-----AACGTTCAACG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73945317 38 + 122973662 TGGAACG--------------AAGTATTCAAAGAACGAAACGA-----AATGTTCAA--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29158687 54 + 172585720 TGAAACGAAGTATTCAAACACAAGTATTCAAACACTGAAACGA-----AATGCTCAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28848701 54 - 170955103 TGAAACGAAGTATTCAAACACAAGTATTCAAACACTGAAACGA-----AATGCTCAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1820801 54 -   2996164 TGAAACGAAGTATTCAAACACAAGTATTCAAACACTGAAACGA-----AATGCTCAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1715942 54 -   2157725 TGAAACGAAGTATTCAAACACAAGTATTCAAGCACTGAAACGA-----AATGCTCAAAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28164815 40 -  71996105 TGAAACG--------------AAGCATTCAAACACTGAAACGA-----AATGCTCAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1804432 54 +   2316924 TGAAACGAAGTATTCAAACACAAGTATTCAAACACTGAAACGA-----AATGCTCAAAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1699569 40 -   3067355 TGAAATG--------------AAGTATTCAAACACTGAAACGA-----AATGCTCGAAG
i colAng1.NW_012115566v1   C 0 I 10
s calJac3.chr4             171302100 21 - 171630274 ---------------------------------ACTGAAACAA-----AGTGTTCAGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            119920 21 -    375362 ---------------------------------AATAAAACGA-----AATGTTCAAAG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1       70019 21 -    285216 ---------------------------------ACTGAAACGA-----AATATTCAAAA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1466076 24 -   2232465 -----------------------------------TGAGATAGTTACCAATATTTAACT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      122843 28 -    373274 I

a score=37423.000000
s hg38.chr6_GL000254v2_alt       998 17 +   4827813 ATAGATATAAGGAAATG---
s panTro5.chr6              28978028 17 + 175400573 ATAGATATAAGGAAATG---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221858 17 + 173848474 ATAGATATAAGGAAATG---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5010546 17 +   6154872 ACAGATATAAAGGTATG---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73945355 13 + 122973662 ----ACATAAGAAAATG---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29158741 12 + 172585720 -----TATAAGAAAACG---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28848755 12 - 170955103 -----TATAAGAAAACG---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1820855 12 -   2996164 -----TATAAGAAAACG---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1715996 12 -   2157725 -----TATAAGAAAACG---
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28164855 12 -  71996105 -----TATAAGAAAACG---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1804486 12 +   2316924 -----TACAAGAAAACG---
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171302121 15 - 171630274 --ATTTGTAAGAAAAAC---
i calJac3.chr4             C 0 I 2
s saiBol1.JH378348            119941 15 -    375362 --ATTCGTAAGAAGAAA---
i saiBol1.JH378348         C 0 I 2
s aotNan1.NW_018494050v1       70040 15 -    285216 --ACTTGTAAGAACAAA---
i aotNan1.NW_018494050v1   C 0 I 2
s otoGar3.GL873742           1466100 14 -   2232465 ------GTAGGGACAAGGAG
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      122843 28 -    373274 I
e colAng1.NW_012115566v1     1699609 10 -   3067355 I

a score=1603.000000
s hg38.chr6_GL000254v2_alt      1015 2 +   4827813 TA
s panTro5.chr6              28978045 2 + 175400573 TA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221875 2 + 173848474 TA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5010563 2 +   6154872 TA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73945368 2 + 122973662 CA
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1     1699619 2 -   3067355 CA
i colAng1.NW_012115566v1   I 10 C 0
s otoGar3.GL873742           1466114 2 -   2232465 GA
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            119956 2 -    375362 I
e aotNan1.NW_018494050v1       70055 2 -    285216 I
e cebCap1.NW_016108108v1      122843 28 -    373274 I
e calJac3.chr4             171302136 2 - 171630274 I
e manLeu1.NW_012104165v1     1804498 0 +   2316924 C
e chlSab2.chr17             28164867 0 -  71996105 C
e cerAty1.NW_012001495v1     1716008 0 -   2157725 C
e macNem1.NW_012011356v1     1820867 0 -   2996164 C
e macFas5.chr4              28848767 0 - 170955103 C
e rheMac8.chr4              29158753 0 + 172585720 C

a score=894219.000000
s hg38.chr6_GL000254v2_alt      1017 76 +   4827813 CTTgt---------ggaagtgctggggatcgaacccagagcctcatgaatgttaagcatacgctctaccactgagctacaccccc
s panTro5.chr6              28978047 76 + 175400573 CTTgt---------ggaggtgctggggatcgaacccagggcctcatgcatgctaagcatacgctctaccactgagctacaccccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221877 76 + 173848474 CTTgt---------ggaggtgctggggatcgaacccagggcctcatgcatgctaagcatacgctctaccactgagctacaccccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5010565 76 +   6154872 CTTgt---------ggaggtgctggggatcgaacccagggcctcatgcatgctaagcatacgctctaccactgagctacaccccc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73945370 76 + 122973662 CTCgt---------ggaggtgctggggatcgaacccagggcctcatgcatgctaagcatgcgctctaccactgaactacaccccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29158753 74 + 172585720 CTCGTG--------ggaggtgctggggattgaaccca--gcctcatgcatgctaagcatgcgctctaccactgagctac-ccccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28848767 76 - 170955103 CTCgt---------ggaggtgctggggattgaacccagggcctcatgcatgctaagcatgcgctctaccactgagctacaccccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1820867 76 -   2996164 CTCgt---------ggaggtgctggggattgaacccagggcctcatgcatgctaagcatgcgctctaccactgagctacaccccc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1716008 76 -   2157725 CTCgt---------ggaggtgctggggattgaacccagggcctcatgcatgctaagcatgcgctctaccactgagctacaccccc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28164867 76 -  71996105 CTTgt---------ggaggtgctggggattgaacccaggacctcatgcatgctaagcatgcgctctaccactgagctacaccccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1804498 76 +   2316924 CTCgt---------ggaggtgctggggattgaacccaggacctcatgcatgctaagcatgcgctctaccactgagctacaccccc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1699621 76 -   3067355 CTCCt---------ggaggtgctggggatcgaacccagggcctcatgcatgctaagcatgcgctctaccactgagctacaccccc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171302138 76 - 171630274 CTCAt---------ggaggtgctggggatcgaacccagggcctcaggcatgctaagcatgcgctctaccactgagctacaccccc
i calJac3.chr4             I 2 I 1
s saiBol1.JH378348            119958 76 -    375362 CTCAt---------ggaggtgctggggatcgaacccagggcctcatgcatgctaagcatgcgctctaccactgagctacaccccc
i saiBol1.JH378348         I 2 I 2
s cebCap1.NW_016108108v1      122871 76 -    373274 CTCAt---------ggaggtgctggggatcgaacccagggcctcatgcatgctaagcatgcgctctaccactgagctacaccccc
i cebCap1.NW_016108108v1   I 28 I 2
s aotNan1.NW_018494050v1       70057 76 -    285216 CTAAt---------ggaggtgctggggatcgaacccagggcctcatgcatgctaagcatgcgctctaccactgagctacaccccc
i aotNan1.NW_018494050v1   I 2 I 73
s otoGar3.GL873742           1466116 84 -   2232465 TTCGTGAGAAAACtggaggtgctggggattgaacccaggacctcatgcatgctaagcatgcgctctaccactgagctacacccc-
i otoGar3.GL873742         C 0 C 0

a score=65357.000000
s hg38.chr6_GL000254v2_alt      1093 21 +   4827813 ACTTA----------------------CAATGCCGTTTTCTTA
s panTro5.chr6              28978123 21 + 175400573 ACTTA----------------------CAATGCTGTTTTCTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221953 21 + 173848474 ACTTA----------------------CAATGCCGTTTTCTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5010641 21 +   6154872 ACTTA----------------------CAACGCCCTTTTCTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73945446 43 + 122973662 ACTCAGGGTAGCCTTTTTTTTTACTTCCAGTAGTCTTTTCTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29158827 21 + 172585720 ACTTA----------------------ATGTTGTTTTTTCTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28848843 21 - 170955103 ACTTA----------------------ATGTTGTTTTTTCTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1820943 21 -   2996164 ACTTA----------------------ACGTTGTTTTTTCTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1716084 21 -   2157725 ACTTG----------------------GCATTTTTTCTTCTTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28164943 21 -  71996105 ACTTG----------------------ACAAGCTGTTTTCTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1804574 21 +   2316924 ACTTG----------------------GTGTTCTTTTTTCTTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1699697 21 -   3067355 ACTCG----------------------AAATATTTCTTTCTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171302215 21 - 171630274 ACTTA----------------------CTGTGCACACTTTCTA
i calJac3.chr4             I 1 I 51
s saiBol1.JH378348            120036 21 -    375362 CCTTG----------------------CTTTGTGTGTTTTCTA
i saiBol1.JH378348         I 2 I 51
s cebCap1.NW_016108108v1      122949 21 -    373274 GCTTG----------------------CTGTGTGTGCTTCCTA
i cebCap1.NW_016108108v1   I 2 I 51
e otoGar3.GL873742           1466200  0 -   2232465 C
e aotNan1.NW_018494050v1       70133 73 -    285216 I

a score=2519812.000000
s hg38.chr6_GL000254v2_alt      1114 283 +   4827813 CTGATTTATTATATGCTATTATCTAAAGGTGAGGGCTTAAGGCATGATAGGTTAAAGTCCGCTATGTTTTAACTCCTGTTTCTGAAACTTCTGAATG----GAATCTTGTCTTGACGCTGTGTCAAGAGGAGAAAGGCATTCTGGACCGAAAGACCCTTGGATCCTCTCACAGCCGTCATCTATTTCAAGGACTGCTGTTAGCCAACTTTCTTT--GTCAGTTTCCGTCCACCTGGAGCGAA-GTTCCAAGATTGAATCTTC--------TGGTATGTCTTCAGATTCTCTCCTTTTT
s panTro5.chr6              28978144 283 + 175400573 CTGATTTATTATATGCTATTATCTAAAGGTGAGGGCTTAAGGCATGATAGGTTAAAGTCCGCTATGTTTTAACTCCTGTTTCTGAAACTTCTGAATG----GAATCTTGTCTTGACGCTGTGTCAAGAGGAGAAAGGCATTCTGGACCGAAAGACCCTTGGATCCTCTAACAGCCGTCATCTATTTTAAGGACTGCTTTTAGCCAACTTTCTTT--GTCAGTTTCCGTCCACCTGGAGCGAA-GTTCCAAGATTGAATCTTC--------TGGTATGTCTTCAGATTCTCTCCTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29221974 283 + 173848474 CTGATTTATTATATGCTATTATCTAAAGGTGAGGGCTTAAGGCATGATACGTTAAAGTCCGCTATGTTTTAACTCCTGTTTCTGAAACTTCTGAATG----GAATCTTGTCTTGACGCTGTGTCAAGAGGAGAAAGGCATTCTGGACCGAAAGACCCTTGGATCCTCTAACAGCCGTCATCTATTTTAAGGACTGCTTTTAGCCAACTTTCTTA--GTCAGTTTCCGTCCACCTGGAGCGAA-GTTCCAAGATTGAATCTTC--------TGGTATGTCTTCAGATTCTCTCCTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5010662 283 +   6154872 CTGATTTATTATATACTATTATCTAAAGGTGAGGGCTTAAGGCATGATAGGTTAAAGTCCGCTATGTTTTAACCCCTGTTTCTGAAACTTCTGAATG----GAATCTTGTCTTGACGCTGTGTCAAGAGGAGAAAGGCATTCTGGACCGAAACACCCTTGGATCCTCTCACAGCCGTCATCTATTTCAAGGACTGCTTTTAGCCAACTTTCTTT--GTCAGTTTCCGTCCACCTGGAGCGAA-GTTCCAAGATTGAATCTTC--------TGGTATGTCTTCAGATTCTCTCCTTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73945489 282 + 122973662 CTGATTTATTATATACTGTTATCTAAAGGTGAGGGCTTAAGGCATGATAGGTTAAAGTCCGCTACG-TTTAACTCCTGTTTCTGAAACTTCTGAATG----GAATCTTGTCTTGACGCTATGTCAAGAGGAGAAAGGCATTCTGGACCAAAAGACTCTTGGATCCTCCCACAGCCGTCATCTATTTCAAGGACTGCTTTTAGCCAACTTTGTTT--GTCAGCTTCCGTCCACCTAGAGCGAA-GTCCCAAGATTGAATCTTC--------TGGTATGTCTTCAGATTCTCTCCTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29158848 277 + 172585720 TCGGTTTATTATACAGTGTTATCTAAA-GTGAGGGCTT-AGGTGTGATACGTTAAAGTCCACTATG-TATGACTCCTGTTTCTGAAA-TTCTGAATG----GAATCTTGTCTTGACGCTGTGTCAAGA-GAGAAAGGCATTCTGGACGGAAAGACCCTTGGATCCTC------CCGTCATCTATTTCAAGGACTGCTTTTAGCCAACTGTCTGT--GTCAG-TTCCATCCACCTGGAGCGAA-GTCCCAGGATTGAAT-TTCTCGTATGCTTGTATGTGTTCAGATTCTCTCCTTTT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28848864 283 - 170955103 TCGGTTTATTATATAGTGTTATCTAAAGGTGAGGGCTT-AGGTGTGATACGTTAAAGTCCACTATA-TATGACTCCTGTTTCTGAAATTTCTGAATG----GAATCTTGTCTTGACGCTGTGTCAAGAGGAGAAAGGCATTCTGGACGGAAAGACCCTTGGATCCTC------CCGTCATCTATTTCAAGGACTGCTTTTAGCCAACTGTCTGT--GTCAGTTTCCATCCACCTGGAGCGAA-GTCCCAGGATTGAATTTTCTCGTATGCTTGTATGTGTTCAGATTCTCTCCTTTTT
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     1820964 283 -   2996164 TCGGTTTATTATATAGTGTTATCTAAAGGTGAGGGCTT-AGGTGTGATACGTTAAAGTCCACTATG-TATGACTCCTGTTTCTGAAATTTCTGAATG----GAATCTTGTCTTGACGCTGTGTCAAGAGGAGAAAGGCATTCTGGACGGAAAGACCCTTGGATCCTC------CCGTCATCTATTTCAAGGACTGCTTTTAGCCAACTGTCTGT--GTCAGTTTCCATCCACCTGGAGCGAA-GTCCCAGGATTGAATCTTCTCGTATGTTTGTATGTGTTCAGATTCTCTCCTTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1716105 283 -   2157725 TCGGTTTATTATATAGTGTTATCCAAAGGTGAGGGCTT-AGGTGTGATACGTTAAAGTCCACTATG-TATGACTCCTGTTTCTGAAATTTCTGAATG----GAATCTTGTCTTAACGCTGTGTCAAGAGGAGAAAGGCATTCTGGACGGAAAGACCCTTGGATCCTC------CCGTCATCTATTTCAAGGACTGCTTTTAGCCAACTGTCTGT--GTCAGTTTCCATCCACTTGGAGCGAA-GTCCCAGGATTGAATCTTCTCGTATGCTTGTATGTGTTCAGATTCTCTCCTTTCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28164964 283 -  71996105 TCGGTTTATTATATAGTGTTATCTAAAGGTGAGGGCTT-AGGTGTGATAGGTTAAAGTCCCCTATG-TATGACTCCTGTTTCTGAAATTTCTGAATG----GAATCTTGTCTTGACACTGTGTCAAGAGGAGAAAGGCATTCTGGACCGAAAGACCCTTGGATCCTC------CCGTCATCTATTTCAAGGACTGCTTTTAGCCAACTGTCTGT--GTCAGTTTCCATCCACCTGGAGCGAA-GTCCCAGGATTGAATCTTCTTGTATGCTTGTATGTGTTCAGATTCTCTCCTTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1804595 283 +   2316924 TCGGTTTATTACATAGTGTTATCTAAAGGTGAGGGCTT-AGGTGTGATACGTTAAAGTCCACTATG-TATGACTCCTGTTTCTGAAATTTCTGAATG----GAATCTTGTCTTGACGCTGTGTCAAGAGGAGAAAGGCATTCTGGACGGAAAGACCCTTGGATCCTC------CCGTCATCTATTTCAAGGACTGCTTTTAGCCAACTGTCTGT--GTCAGTTTCCATTCACCTGGAGCGAA-GTCCCAGGATTGAATCTTCTCGTATGCTTGTATGTGTTCAGATTCTCTCCTTTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1699718 282 -   3067355 CTGATTTATTATATAGTGTTATCTAAAGGTGACGGCTT-AGGCGTGATAGGTTAAAGTCCACTATG-TATGACTCATGTTTCTGAAATTTCTGAATG----GAATCTTGTCTTGACGCTGTGTCAAGAGGAGAAAGGCATTCTGGACCGAAAGACCCTTGGATCCTC------CCGTCATCTATTTCAAGGACTGCTTTTAGCCAACTGTCTGT--GTCAGTTTCCATCCACCTGGAGTGAA-GTCCCAGGATTGAATCTTCTTGTATGCTTGTATGTGTTCAGATTCTCTCCTTCT-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171302287 267 - 171630274 CTGATTTGTTACACACCACTGTCTAAAAGTGAGGGCTTAAGGCGTGATAGGTTTAAGTCCACTATG-TTTAACTCGTGTTTCTGAAACTTCTGAACG----GAATCTTGTCTTGAAGCTGTGTCAAGAGGAGAAAAACATTCTAGACCAAAAGACCCTTGGAT-CTCCCACAGCTGTCATCTAGTTCAAG--------------AACTGTCTGT--GTCCGTTTCCGCCCACCTGGAGCAAA-GGCCCAGGGTTGAATCTTC--------TGGTATGTCTTCAGATTCTCTCCTGTTT
i calJac3.chr4             I 51 I 287
s saiBol1.JH378348            120108 267 -    375362 CTGATTTGTTATACACCACTGTCTAAAAGTGAGCGCTTAAGGCATGATAGGTTAAAGTCCACTATG-TTTAACTCCTGTTTCTGAAACTTCTGAACA----GAACCTTGTCTTGGAGCTGTGTCAAGAGGAGAAAAGCATTCTAGACCCAAAGACCCTTGGATCCTCCCACAGCCGTCATCTGTTTCAAG--------------AACTGCCTGT--GTCAGTTT-CGCCCATCTGGAGCAAA-GTCCCAGGGTTAAATCTTC--------TGGTATGTCTTCAGATTCTCTCCTGTTT
i saiBol1.JH378348         I 51 C 0
s cebCap1.NW_016108108v1      123021 268 -    373274 CTGATTTGTTATACACCACTGTCTAAAAGCGAGGGCTTAAGGCATGACAGGTTAAAGTCCACTATG-TTTAACTCCTGTTTCTAAAACTTCTGAACG----GAATCTCGTCTTGAAGCTGTGTCAAGAGGAGAAACGCATTCTAGACCGAAAGACCCTTGGATCCTCCCACAGCCGTCATCTATTTCAAG--------------AACTGTCTGT--GTCAGTTTCCGCCCACCTGGAGCAAA-GTCCCAGGGTTGAATCTTC--------TGGTATGTCTTCAGATTCTCTCCTGTTT
i cebCap1.NW_016108108v1   I 51 C 0
s aotNan1.NW_018494050v1       70206 266 -    285216 CTGATTTGTTACCCACCACTGTCTAAAAGTGAGGGCTTAAGGCATGATAGGTTAAAGTCCACTATG-TTTAACTCCTGTTTCTGAAACTTCTGAAGG----GAATCTCGTCTTGAAGTTGTGTCTAGAGGAGAAAGGTATTCTAGACCGAAAGACCCTTGGGTCCTCCCACAGCCGTCGTCTATTTCAAG--------------AACTGTCTGT--GTCAGTTTCCGCCCACCTGCAGC--A-GCCCCAGGGTTGAATCTTC--------TGGCATGTCTTCAGATTCTCTCCTGTTT
i aotNan1.NW_018494050v1   I 73 C 0
s otoGar3.GL873742           1466200 260 -   2232465 ----------------------cTACATGTAAACTTTGACATCATGAAAAACTACTGACCATTATA-TTTAATTTTTGATTCCTG---TTCTGAATGAACTGGATCTTGCTTCTACTCTGTGCCAGGAAGAGAAA-GCACTTTGAACCAAAAGGCCCTTTGATTTTCCCACAGTCTTCATCT-TCTCAAGGACTCCTTTTAGCCAGCTATCTTTGGGTCAATTTCACCTCTGCTGGTGAGAAGGTCCCAGGATTGAATCTTC--------TTATATATC-TCAGATTCTCCCTCTGT-
i otoGar3.GL873742         C 0 C 0

a score=342559.000000
s hg38.chr6_GL000254v2_alt      1397 51 +   4827813 AAAAAAA-CCTCCT----CTATGGAGCTGCCA----------acaca------------cacacacacacacacac--ac
s panTro5.chr6              28978427 52 + 175400573 AAAAAAAATCTCCT----CTATGGAGCTGCCA----------acaca------------cacacacacacacacac--ac
i panTro5.chr6             C 0 I 12
s panPan2.chr6              29222257 52 + 173848474 TAAAAAAATCTCCT----CTATGGAGCTGCCA----------acaca------------cacacacacacacacac--aa
i panPan2.chr6             C 0 I 11
s gorGor5.CYUI01015250v1     5010945 51 +   6154872 AAAAAAG-CCTCCT----CTATGGAGCTGCCA----------acaca------------cacacacacacacacac--ac
i gorGor5.CYUI01015250v1   C 0 I 23
s nomLeu3.chr1a             73945771 55 + 122973662 AAAAAAA-CCTTCTCTGCCTAAGAAGCTGCCA----------acaca------------cacacacacacacacac--ac
i nomLeu3.chr1a            C 0 I 28
s rheMac8.chr4              29159125 57 + 172585720 -AAAAAAACCTTCTCTGCCTATGAAGCTGCCA----------acacacca--------ccacacacacacacacac----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28849148 42 - 170955103 AAAAAAAATCTTCTCTGCCTATGAAGCTGCCA----------------------------------acacacacac----
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     1821247 54 -   2996164 AAAAAAAACCTTCTCTGCCTATGAAGCTGCCA----------acaca------------cacacacacacacacac----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1716388 54 -   2157725 AAAAAAAACTTTCTCTGCCTATGAAGTTGCCA----------ACCca------------cacacacacacacacac----
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28165247 50 -  71996105 TAAAAAAACCTTCTCTGCCTATGAAGCTGCCA--------------------------acacacacacacacacac----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1804878 60 +   2316924 TAAAAAAACCTTCTCTGCCTATGAAGCTGCCA----------acacacaca------cacacacacacacacacac----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1700000 56 -   3067355 AAAAAAAACCTTCTCTGCCtatgaaactccca----------acaca------------cacacacacacacacacac--
i colAng1.NW_012115566v1   C 0 I 838
s calJac3.chr4             171302841 67 - 171630274 -aaaaaaaCCTTCTCTGCCTATGAAGCTGCCA--------acacacacacacacacacacacacacacacacacac----
i calJac3.chr4             I 287 C 0
s saiBol1.JH378348            120375 65 -    375362 -TAAAAAACCTTCTCTGCCTATGAAGCTGCCA----------AAacacacacacgcgcgcgcacacacacacacac----
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      123289 75 -    373274 -TAAAAAACCTTCTCTGCCTATGAAGCTGCCAAAacacacacacacacgcacacacacacacacacacacacacac----
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       70472 69 -    285216 -TAAAAAACCTTCTCTGCCTATGAAGCTGCCA------AAacacacacacacaagcacacacacacacacacacac----
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1466460 45 -   2232465 -AGAAAGTACTTCTCTACCTAGGAAGCTTCCT---------------------------AAAAGATACCCAAA-------
i otoGar3.GL873742         C 0 C 0

a score=738498.000000
s hg38.chr6_GL000254v2_alt      1448 88 +   4827813 GCGCGCGCGATAGTGCCAGAGAATATAAAGACGAGTTCTGTGAGTGCTGCAGAGGAAACGTAGATCCAGGTGAGGAGACAAGACAAGA
s panTro5.chr6              28978491 88 + 175400573 GCGCGCGCGGTAGTGCCAGAGAATATAAAGACGAGTTCTGTGAGTGCTGCAGAGGAAACGTAGATCCAGGTGAGGAGACAAGACAAGA
i panTro5.chr6             I 12 C 0
s panPan2.chr6              29222320 88 + 173848474 GCGCGCGCGGTAGTGCCAGAGAATATAAAGACGAGTTCTGTGAGTGCTGCAGAGGAAACGTAGATCCAGGTGAGGAGACAAGACAAGA
i panPan2.chr6             I 11 C 0
s gorGor5.CYUI01015250v1     5011019 88 +   6154872 GAGCGCGGGGTAGTGCCAGAGAATATAAAGACGAGTTCTGTGAGTGCTGCAGAGGAAACGTAGATCCAGGTGAGGAGACAAGACAAGA
i gorGor5.CYUI01015250v1   I 23 C 0
s nomLeu3.chr1a             73945854 84 + 122973662 ACATACACGGTAGTGCCAGGGAATATAAAGACTAGTTCTGTGAGTGCTGCAGAGGAAACGTAGATCCAGGTGAGGAGATAAGAC----
i nomLeu3.chr1a            I 28 C 0
s rheMac8.chr4              29159182 88 + 172585720 acagacacGGTTGTGCCAGAGAATATAAAGACTAGTTCTGTGAATGCTGCAGAGAAAACCTAGATCCAGGTGAGGAGATAAGACAAGA
i rheMac8.chr4             C 0 I 1024
s macFas5.chr4              28849190 88 - 170955103 acacacaTGGTTGTGCCAGAGAATATAAAGACTAGTTCTGTGAATGCTGCAGAGAAAACCTAGATCCAGGTGAGGAGATAAGACAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1821301 88 -   2996164 acacacacGGTTGTGCCAGAGAATATAAAGACTAGTTCTGTGAATGCTGCAGAGAAAACCTAGATCCAGGTGAGGAGATAAGACAAGA
i macNem1.NW_012011356v1   C 0 I 1032
s cerAty1.NW_012001495v1     1716442 88 -   2157725 acacacacGGTTGTGCCAGAGAATATAAAGACTAGTTCTGTGAATGCTGCAGAGAAAACCTAGATCCAGGTGAGGAGATAAGACGAGA
i cerAty1.NW_012001495v1   C 0 I 1025
s chlSab2.chr17             28165297 88 -  71996105 acacacacGGTAGTGCCAGAGAATATAAAGACTAGTTCTGTGAATGCTGCAGAGAAAACCTAGATCCAGATGAGGAGATAAGACAAGA
i chlSab2.chr17            C 0 I 1020
s manLeu1.NW_012104165v1     1804938 88 +   2316924 acacacacGGTTGTGCCAGAGAATATAAAGACTAGTTCTGTGAATGCTGCAGAGAAAACCTAGATCCAGGTGAGGAGATAAGACAAGA
i manLeu1.NW_012104165v1   C 0 I 1034
s calJac3.chr4             171302908 84 - 171630274 acacacacGGTAGAGCCAGAGAATGTAAACACTAGTTCTGTGAATGTTGCAGAGGAAACCTAGATCCAGGTGAGGAGATAAGAC----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            120440 84 -    375362 acacacTCGGTAGAGCCAGAGAACGTAAACACTAGTTCTGTGAATGTTGCAGAGGAAATCTAGATCCAGGTAAGGAGATAAGAC----
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      123364 84 -    373274 acacacacGGTAGAGCCAGAGAATGTCAACACTAGTTCCGTGAATGTTGCAGAGGAAACCTAGAACCAGGTGAGGAGATAAGAC----
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       70541 84 -    285216 acacacaTGATAGAGCCAGAGAATGTAAACACTAGTTCTGTGAATGTTGCAGAGGAAACCTAGATCCAGGTGAGGAGATAAGAC----
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1466505 66 -   2232465 --------GATAGTGCCAGGGAATACAAAGATGAGTTCTGTGAATG--------------TAGATGCAGGTGGGGACATAAGATAAGA
i otoGar3.GL873742         C 0 C 0
e colAng1.NW_012115566v1     1700056 838 -   3067355 I

a score=5867.000000
s hg38.chr6_GL000254v2_alt      1536 3 +   4827813 TGT
s panTro5.chr6              28978579 3 + 175400573 TGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29222408 3 + 173848474 TGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5011107 3 +   6154872 CGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73945938 2 + 122973662 -GT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28849278 3 - 170955103 CGT
i macFas5.chr4             C 0 I 1021
s calJac3.chr4             171302992 2 - 171630274 -AT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            120524 2 -    375362 -GT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      123448 2 -    373274 -GT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       70625 2 -    285216 -TT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1466571 3 -   2232465 AGT
i otoGar3.GL873742         C 0 C 0
e colAng1.NW_012115566v1     1700056 838 -   3067355 I
e manLeu1.NW_012104165v1     1805026 1034 +   2316924 I
e chlSab2.chr17             28165385 1020 -  71996105 I
e cerAty1.NW_012001495v1     1716530 1025 -   2157725 I
e macNem1.NW_012011356v1     1821389 1032 -   2996164 I
e rheMac8.chr4              29159270 1024 + 172585720 I

a score=598206.000000
s hg38.chr6_GL000254v2_alt      1539 191 +   4827813 TAatgcacaaaagtcaactaaaaacgaatttaaatcttaaacttaagcccctaaactgtaaaattccttgaagaaaaca---ggggggaatattcttgacattggtttaggcaatggtttcttgagtatgacaccaaaag--cacaggcaacaaaagcaaaaatggataagcgagactatagcaaactaaaaagct
s panTro5.chr6              28978582 191 + 175400573 TAatgcacaaaagtcaactaaaaacgaatttaaatcttaaacttaagcccctaaactgtaaaattccttgaagaaaaca---ggggggaatattcttgacattggtttaggcaatggtttcttgagtatgacaccaaaag--cacaggcaacaaaagcaaaaatggataagcgagactatagcaaactaaaaagct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29222411 191 + 173848474 TAatgcacaaaagtcaactaaaaacgaatttaaatcttaaacttaagcccctaaactgtaaaattccttgaagaaaaca---ggggggaatattcttgacattggtttaggcaatggtttcttgagtatgacaccaaaag--cacaggcaacaaaagcaaaaatggataagcgagactatagcaaactaaaaagct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5011110 191 +   6154872 TAatgcacaaaagtcaactaaaaacgaatttaaatcttaaacttaagcccctaaactgtaaaattccttgaagaaaaca---gggggaaatcttcttgacattggtctaggcaatggtttcttgagtatgacaccaaaag--cacaggcaacaaaagcaaaaatggataagtgagactatagcaaactaaaaagct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73945940 190 + 122973662 TAatgcacaaaagtcgactaaaaacgaatttaaaacttaaacttaagcccctaaactgtaaaattccttgaagaaaaca---gggggaaatcttcttgacattggtctaggcaatgatttcttgagtatg-caccaaaag--cacaggcaacaatagcacaaatggataagtgagactatagcaaactaaaaagct
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171302994 181 - 171630274 TAatgcacaaaaatcaactaaaaacgaatttaaaacttaaacttaagctccaaaac--taaaattccttgaagaaagca---ggaggacagattcttgacattggtctaagcaatgatttcttgagtatgacaccaaaag--tacaggccacaaaggcaaaaat--------aagactatagcaaactaaaaagct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            120526 181 -    375362 TAatgcacaaaaatcaactaaaaactaatttaaaacttaaacttaagccccaaaat--gaaaattccttgaagaaaaca---gggggacagattcttgacattggtctaagcaatgatttcttgagtatgacaccaaaag--tacaggcaacaaaagcaaaaat--------gagactatagcaaactaaaaagct
i saiBol1.JH378348         C 0 M 1697
s cebCap1.NW_016108108v1      123450 181 -    373274 TAatgcacaaaaatcaactaaaaacgaatttaaaacttaaacttaagccccaaaac--caaaattccatgaagaaaaca---gggggacagattcttgacattggtctaagcaatgatttcttgagtatgataccaaaag--tacaggcaacaaaagcaaaaat--------gagactatagcaaactcaaaagct
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       70627 179 -    285216 TAatgcacaaaaatcaactaaaaacgaatttaaaacttaaacttaagccccaaaac--taaaattccttgaagaaaac-----ggggacagattcttggcattggtctaagcaatgatttcttgagtatgacaccaaaag--tacaggcaacaaaagcaaaaat--------gagactacagcaaactaaaaagct
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1466574 181 -   2232465 TAatacacaaaaatcaagtaaaaaatagattaa-----aaacttaagacccaaaac--------ttcttgaagaaaacatatgagaaaagcatcttaaacattggtttaggctgtgatttattgagtattatatcaaaagcacacagacaacaaaagcaaaagtagacaagcagaactataacaaactaaaaaa--
i otoGar3.GL873742         C 0 C 0
e colAng1.NW_012115566v1     1700056 838 -   3067355 I
e manLeu1.NW_012104165v1     1805026 1034 +   2316924 I
e chlSab2.chr17             28165385 1020 -  71996105 I
e cerAty1.NW_012001495v1     1716530 1025 -   2157725 I
e macNem1.NW_012011356v1     1821389 1032 -   2996164 I
e macFas5.chr4              28849281 1021 - 170955103 I
e rheMac8.chr4              29159270 1024 + 172585720 I

a score=247161.000000
s hg38.chr6_GL000254v2_alt      1730 96 +   4827813 tcttcacaggaaagaaaacaatcaacaaaggaaaaaggcaa-----gctatggaatgggagaaaatatttgcaaat-catttatctgataaggggttaatat
s panTro5.chr6              28978773 96 + 175400573 tcttcacaggaaagaaaacaatcaacaaaggaaaaaggcaa-----gctatggaatgggagaaaatatttgcaaat-catttatctgataaggggttaatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29222602 96 + 173848474 tcttcacaggaaagaaaacaatcaacaaaggaaaaaggcaa-----gctatggaatgggagaaaatatttgcaaat-catttatctgataaggggttaatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5011301 96 +   6154872 tcttcacaggaaagaaaacaatcaacaaaggaaaaaggcaa-----gctatggaatgggagaaaatatttgcaaat-catttatctgataaggggttaatat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73946130 96 + 122973662 tcttcacagcaaagaaaacaatcaacagaggaaaaaggcaa-----gatatggaatgggagaaaatatttgcaaat-catttatctgataaggggttaatat
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171303175 95 - 171630274 tcttcacaactaagaaaacagtcaacggagaaaaaaggcaa------ctatggaatgggagaaaatatctgcgaat-tatttatctgataaggggttaatat
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      123631 92 -    373274 tcttcacaacaaagaaaacaaacaac----aaaaaatgcaa-----cctatggaatgggagaaaatatctgcgaat-tatttatctgataaggggttaatat
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       70806 96 -    285216 tcttcacaacaaagaaaacaatcaacaaagagaaaaggcaa-----cctatggaatgggagaaaatatctgtgaat-tatttatctgataaggggttaatat
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1466755 90 -   2232465 --ttcacaacaaagaaaaaagtctaaagagtgaaaaggcaacccaacccatggaatgggagaaaatatttgcaaatatatttgcc----------ttaatat
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e colAng1.NW_012115566v1     1700056 838 -   3067355 I
e manLeu1.NW_012104165v1     1805026 1034 +   2316924 I
e chlSab2.chr17             28165385 1020 -  71996105 I
e cerAty1.NW_012001495v1     1716530 1025 -   2157725 I
e macNem1.NW_012011356v1     1821389 1032 -   2996164 I
e macFas5.chr4              28849281 1021 - 170955103 I
e rheMac8.chr4              29159270 1024 + 172585720 I

a score=2548.000000
s hg38.chr6_GL000254v2_alt      1826 1 +   4827813 a
s panTro5.chr6              28978869 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29222698 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5011397 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73946226 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s cebCap1.NW_016108108v1      123723 1 -    373274 A
i cebCap1.NW_016108108v1   C 0 I 2
s aotNan1.NW_018494050v1       70902 1 -    285216 A
i aotNan1.NW_018494050v1   C 0 I 2
s otoGar3.GL873742           1466845 1 -   2232465 a
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e calJac3.chr4             171303270 0 - 171630274 C
e colAng1.NW_012115566v1     1700056 838 -   3067355 I
e manLeu1.NW_012104165v1     1805026 1034 +   2316924 I
e chlSab2.chr17             28165385 1020 -  71996105 I
e cerAty1.NW_012001495v1     1716530 1025 -   2157725 I
e macNem1.NW_012011356v1     1821389 1032 -   2996164 I
e macFas5.chr4              28849281 1021 - 170955103 I
e rheMac8.chr4              29159270 1024 + 172585720 I

a score=380102.000000
s hg38.chr6_GL000254v2_alt      1827 379 +   4827813 caaaataaattttttaaaccgctacaagtcaatagccacacacacacacacacacacac----acaccccttagaatcccaaataacctgatttttaaaacgagcataggacttgaatagacatgtctccaaagaagacatacaaatagccactaggtatgtgaagaggtgctcttaacatcactaatcatcaaggaaatgcaaatcaaaatcacaatagat----accacctcacacctattaggatgtctgttatt--aaaaagaaaaaactcaaaaggtaagtgttagcaaagatgtagagaaattggaacccttctacactgttggtg----tgtaaaatgatgacaccactatggaaaatagtaaggggtcgcctcaaaagataaaaa
s panTro5.chr6              28978870 373 + 175400573 caaaataaattttttaaaccgctacaagtcaatagccacacacacacacacacacacac----------cttaaaatcccaaataacctgatttttaaaacgagcataggacttgaatagacatgtctccaaagaagacatacaaatagccactaggtatgtgaagaggtgctcttaacatcactaatcatcaaggaaatgcaaatcaaaatcacaatagat----accacctcacacctattaggatgtctcttatt--aaaaagaaaaaactcaaaagataagtgttagcaaagatgtagagaaattggaacccttctacactgttggtg----tgtaaaatgatgacaccactatggaaaatagtaaggggtcgcctcaaaagataaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29222699 379 + 173848474 caaaataaattttttaaaccgctacaagtcaatagccacacacacacacacacacacac----acacaccttaaaatcccaaataacctgatttttaaaacgagcataggacttgaatagacatgtctccaaagaatacatacaaatagccactaggtatgtgaagaggtgctcttaacatcactaatcatcaaggaaatgcaaatcaaaatcacaatagat----accacctcacacctattaggatgtctcttatt--aaaaagaaaaaactcaaaagataagtgttagcaaagatgtagagaaattggaacccttctacactgttggtg----tgtaaaatgatgacaccactatggaaaatagtaaggggtcgcctcaaaagataaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5011398 381 +   6154872 caaaataaattttttaaaccgctacaagtcaatagccacacacacacacatatacacac--acacaccccttaaaatcccaaataacctgatttttaaaatgagcatagaagttgaatagacatgtctccaaagaagacatacaaatagccactaggtgtgtgaagaggtgctcttaacatcactaatcatcaaggaaatgcaaatcaaaatcacaatagat----accacctcacacctattaggatgtctcttatt--aaaaagaaaaaactcaaaagataagtgttagcaaagatgtagagaaattggaacccttctacactgttggtg----tgtaaaatgatgacaccactatggaaaatagtaaggagtcgcctcaaaagataaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73946227 385 + 122973662 taaaataaattttttaaactgctacaagtcaatagccaaacacacacacacacaaacatacacacacaatttaaaatcccaaataacctgatttttaaaatgagcataggacttgaatagacatgtctccaaagaagacatacaaatagccactaggtttgtgaagaggtgctcttaacatcactgatcatcaaggaaatgcaaatcaaaaccacaatagat----accacctcacacctatcaggatgtctcttattaaaaaaaaaaaaaactcaaaagataagtgttagcaaagatgtggagaaattggaacccttctacactgttggta----tgtaaaatgatgccaccactatggaaaacagtatggagtttcctcaaaagataaaaa
i nomLeu3.chr1a            C 0 I 316
s otoGar3.GL873742           1466846 294 -   2232465 caaa--aaatgtaagaaactactacaactcaatagcaaaac-------------------------------aaaaacccaagtaaccaga-tttaaaaataagcaaaggacttgaatagacatttctccaaag--------------------------------------tcatg----ccctagccacaagggaaatgcaaatcaaagccacaaggagttatcatcacctcacatccgttaggataattattatt--aaaaaaaaa-------------aagtgttagtgaagatgtgcagaaattggaacccttgtacactgttggtgagaatttaagctg--------gctagaggaaacagtatggaggttcctcaaaagatgaaaa
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e aotNan1.NW_018494050v1       70903   2 -    285216 I
e cebCap1.NW_016108108v1      123724   2 -    373274 I
e calJac3.chr4             171303270   0 - 171630274 C
e colAng1.NW_012115566v1     1700056 838 -   3067355 I
e manLeu1.NW_012104165v1     1805026 1034 +   2316924 I
e chlSab2.chr17             28165385 1020 -  71996105 I
e cerAty1.NW_012001495v1     1716530 1025 -   2157725 I
e macNem1.NW_012011356v1     1821389 1032 -   2996164 I
e macFas5.chr4              28849281 1021 - 170955103 I
e rheMac8.chr4              29159270 1024 + 172585720 I

a score=595421.000000
s hg38.chr6_GL000254v2_alt      2206 535 +   4827813 tagaactaccatatgatccagcaatcccacttctgggtatatgtccccaaaaaatcgaaattagaatttcaaagaaacatatgcactcccatgttcactgcagcattatttacaataaccaagataagggaacaatccaagtgtccattgagagatgagtggacaaagaaaatgtggtatatacatacaatggaatattattcagccttt----tataaaaaagaaattctgccatttgcaccagcatcaatgattaacctggaggacattatgctaagtgaaataagccagtcacagaaggacaaatatttcataattccacttatatgaggtatctaaaatagtcaaactcataaatgcagagaacagaatggtgattgtcagggaccagaggcagagggaaatggggagttgttgctcggtgagt-taaaattttagttatgaaacatgaataagttctagagatctattgcacaacctagtgccttcagttaacaataccataatgtacacttaaaattttgttaaaaagataa--ct
s panTro5.chr6              28979243 535 + 175400573 tagaactaccatatgatccagcaatcccacttctgggtatacgtccccaaaaaatcgaaattagaatttcaaagaaacatatgcactcccatgttcactgcagcattattcacaataaccaagttaagggaacaatccaaatgtccattgagagatgagtggacaaagaaaatgtggtatatacatacaatggaatattattcagccttt----tataaaaaagaaattctgccatttgcaccagcatcaatgattaacctggaggacattatgctaagtgaaataagccagtcacagaaggacaaatatttcataattccacttatatgaggtatctaaaatagtcaagctcataaatgcagagaacagaatggtgattgtcagggaccagaggcagagggaaatggggagttgttgctcagtgagt-taaaattttagttatgaaacatgaataagttctagagatctattgcacaacctagtgccttcagttaacaataccataacgtacacttaaaattttgttaaaaagataa--ct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29223078 535 + 173848474 tagaactaccatatgatccagcaatcccacttctgggtatacgtccccaaaaaatcgaaattagaatttcaaagaaacatatgcactcccatgttcactgcagcattattcacaataaccaagttaagggaacaatccaaatgtccattgagagatgagtggacaaagaaaatgtggtatatacatacaatggaatattattcagccttt----tataaaaaagaaattctgccatttgcaccagcatcaatgattaacctggaggacattatgctaagtgaaataagccagtcacagaaggacaaatatttcataattccacttatatgaggtatctaaaatagtcaaactcataaatgcagagaacagaatggtgattgtcagggaccagaggcagagggaaatggggagtttttgctcagtgagt-taaaattttagttatgaaacatgaataagttctagagatctattgcacaacctagtgccttcagttaacaataccataacgtacacttaaaattttgttaaaaagataa--ct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5011779 533 +   6154872 tagtactaccatatgatccagcaatcccgcttctgggtatatgtccccaaaaaatcgaaatcagaatttcaaagaaacatatgcactcccatgttcactgcagcattattcacaataaccaagataagggaacaatccaaatgtccattgagagatgagtggacaaagaaaatgtggtatatacatacaatggaatattattcagcc-tt----tataaaaaagaaattctgccatttgcaccagcatcaatgattaacctggaggacattatgctaagt-aaataagccagtcacagaaggacaaatatttcatgattccacttatatgaggtatctaaaatagtcaaactcataaatgcagagaacagaatggtgattgtcagggaccagaggcagagggaaatggggagttgttgctaggtgagt-taaaattttagttatgaaacatgaataagttctagagatctattgcacaacctagtgccttcagttaacaataccataatgcacacttaaaattttgttaaaaagataa--ct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73946928 523 + 122973662 cagaactaccatatgatccagcaatcccacttctgggtataagtcccccaaaaatcgaaattagaatctcaaagaaacatatgcactcccatgttcactgcagcattattcacaataaccaagagaaggcaacaatccaaatgtccattgacagatgagtggacaaagaaaatgtggtatatacatacaatggaatattattcagccttt----tataaaaaagaaattctgccatttgcaccagcatgaatgattaacctggaagacactatgctaagtgaaataagccagtcacagaaggacaaatatttcatgattccacttatacgaggtatctaaaatagtcaaactcacaaatgcagagaacagaatggtgattgtcagggaccagaggcaga---------ggagctgttgctcggtgagt-taaaattttagttatgaaacatgaataagttctagagatctg-tgcaccacatagtg-cttcag-taacaatactataatgtacactgaaaaatt--gtaaaaagataactct
i nomLeu3.chr1a            I 316 C 0
s otoGar3.GL873742           1467140 524 -   2232465 caacactaccatttgatccagtaatctcacttctgggtatatat-tcaaaagaattaaaattaggatctcagagaaatatatgcacttccatgttcattacagcattatttacaacaaccaagatgtggaagcaacccaaatacccattgtcagatgagtgaacaaagaaaatgcagtatatacatatagtgtaatactattcagtctttaaaaaaaaaaaaaaaaagtctgccatttgcaacaacacgg------aaccggaaagatagtatgctaagtgaaataagccagtcacagaaggataaatactgcacaattccatttatgtgtaatatctaaaatagtca--ctcatagaagcagagaatgaa----tggttgtcaggagctgtaggaaggggtgg--gagaagttgctgctcaataggtgtaaagtttcagttacacaaaatgaataagttctagagttctgatgtgcaacatagtgcctataattaacaacactat-atgtacatgcataaatttgtcaaaagggcaa--at
i otoGar3.GL873742         C 0 I 44
e saiBol1.JH378348            120707 1697 -    375362 M
e aotNan1.NW_018494050v1       70903   2 -    285216 I
e cebCap1.NW_016108108v1      123724   2 -    373274 I
e calJac3.chr4             171303270   0 - 171630274 C
e colAng1.NW_012115566v1     1700056 838 -   3067355 I
e manLeu1.NW_012104165v1     1805026 1034 +   2316924 I
e chlSab2.chr17             28165385 1020 -  71996105 I
e cerAty1.NW_012001495v1     1716530 1025 -   2157725 I
e macNem1.NW_012011356v1     1821389 1032 -   2996164 I
e macFas5.chr4              28849281 1021 - 170955103 I
e rheMac8.chr4              29159270 1024 + 172585720 I

a score=257614.000000
s hg38.chr6_GL000254v2_alt      2741 302 +   4827813 cggccgggagcggtggctcacgcctgtaatctcagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacgcggtgaaaccccgtctctactaaaaatgttttaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgagaggctgaggcaggagaatggcgtgaacccggaagtcggaggttgcagtgagccgagatcgcaccactgcactctagcctgggcgacag-gcgagactcagtctcaaaataaaaaaa-------aaaaaa
s panTro5.chr6              28979778 309 + 175400573 cggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacgcggtgaaaccccgtctctactaaaaatgttttaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgagaggctgaggcaggagaatggcgtgaacccggaagtcggaggttgcagtgagccgagatcgcaccactgcactctagcctgggcgacag-gagagactcagtctcaaaataaaaaaattaaaaaataaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29223613 309 + 173848474 cggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacgcggtgaaaccccgtctctactaaaaatgttttaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgagaggctgaggcaggagaatggcgtgaacccggaagtcggaggttgcagtgagccgagatcgcaccactgcactctagcctgggcgacag-gagagactcagtctcaaaataaaaaaataaaataaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5012312 310 +   6154872 cggccgggcgctgtggctcacacctgtaatcccagcactttgggaggccgaggcgggctgatcacgaggtcaggagatcgagaagatcctggctaacgcagtgaaaccccgtctctactgaaaatatttttaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgagaggctgaggcaggagaatggcgtgaacccggaagtcggaggatgcagtgagccgagatcgcaccactgcactctagcctgggcgacagagcgagactcagtctcaaaataaaaaaataaaaaaataaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73947451 293 + 122973662 cggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcggatcacgaggtcaggaaatcgagaccagcctggctaacatggtgaaaccccgtctctactaaaaatattttaaaaaattagccgggcacgatggcgggcgcctgtagtcccagctactcgagaggctgaggcaggagaatggcgtgaacc-------ctgagtttgcagtgagccgagatcgcgccactgcactctagcctgggcgacagagcgagactccatctcaaaaacaaa----------acaaaa
i nomLeu3.chr1a            C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1467664  44 -   2232465 I
e aotNan1.NW_018494050v1       70903   2 -    285216 I
e cebCap1.NW_016108108v1      123724   2 -    373274 I
e calJac3.chr4             171303270   0 - 171630274 C
e colAng1.NW_012115566v1     1700056 838 -   3067355 I
e manLeu1.NW_012104165v1     1805026 1034 +   2316924 I
e chlSab2.chr17             28165385 1020 -  71996105 I
e cerAty1.NW_012001495v1     1716530 1025 -   2157725 I
e macNem1.NW_012011356v1     1821389 1032 -   2996164 I
e macFas5.chr4              28849281 1021 - 170955103 I
e rheMac8.chr4              29159270 1024 + 172585720 I

a score=294841.000000
s hg38.chr6_GL000254v2_alt      3043 52 +   4827813 aaaaagataactctgatgtttaagtcttcttaccacccatgaacatgaaaga
s panTro5.chr6              28980087 52 + 175400573 aaaaagataactctgatgtttaagttttcttaccacccatgaacatgaaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29223922 52 + 173848474 aaaagaataactctgatgtttaagttttcttaccacccatgaacatgaaaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5012622 52 +   6154872 aaaaagataactctgatgtttaagtcttcttaccacccatgcacatgaaaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73947744 52 + 122973662 aaaaagataactctcatgtttaagtcttcttaccatccatgcacatgaaaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29160294 52 + 172585720 aaaaagataactctcatgtttaagtcttctcaccacctatgcacatgaaaga
i rheMac8.chr4             I 1024 C 0
s macFas5.chr4              28850302 52 - 170955103 aaaaagataactctcatgtttaagtcttctcaccacccatgcacatgaaaga
i macFas5.chr4             I 1021 C 0
s macNem1.NW_012011356v1     1822421 52 -   2996164 aaaaagataactctcatgtttaagtcttctcaccacccatgcacatgaaaga
i macNem1.NW_012011356v1   I 1032 C 0
s cerAty1.NW_012001495v1     1717555 52 -   2157725 aaaaagataactctcatgtttaagtcttctcaccacccatgcacatgaaaga
i cerAty1.NW_012001495v1   I 1025 C 0
s chlSab2.chr17             28166405 52 -  71996105 aaaaagataactctcatgtttaagtcttctcaccacccatgcacatgaaaga
i chlSab2.chr17            I 1020 C 0
s manLeu1.NW_012104165v1     1806060 52 +   2316924 aaaaagataactctcatgtttaagtcttctcaccacccatgcacatgaaaga
i manLeu1.NW_012104165v1   I 1034 C 0
s colAng1.NW_012115566v1     1700894 52 -   3067355 aaaaagataattctcatgtttaagtcttctcgccacccatgcacatgaaaga
i colAng1.NW_012115566v1   I 838 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1467664 44 -   2232465 I
e aotNan1.NW_018494050v1       70903  2 -    285216 I
e cebCap1.NW_016108108v1      123724  2 -    373274 I
e calJac3.chr4             171303270  0 - 171630274 C

a score=4686503.000000
s hg38.chr6_GL000254v2_alt      3095 830 +   4827813 acacaaagaaacttttggagt---tgataagtgtgtttattacc--gattgtggaaatagcattataaatgtatgcatatgtcctcactca-ta---tgcttaccttcaac--gtgtagggg---------ttttgcatatatcaactgtacttcaataaagttgttAATAACTCCTGAAAAACAACCAAACAAGCAAAGACAAGAGGTTAATTCACAACA-TTGACAAAAACAAAGAGTGACAAAGGT-----AGCAGTTTTGCACAAG----------GTTGCGTCCAACATCTGGATTTGG-AAATGTGGCAGCGGCTTCATCGGCGACTCTACAGCTATAGGTTTTT------TTGttt--------ttgattttttatagagacgggat---g------ggggaagggggcgggtcggtcttctccctgtgttgcccaggctggtcttgaattcctgggcttaagcaatactcccgcctccgcctccaaaagtgctcggattactggtgtttgccgccaagcctgactagctctggttttAAAGACAACACAAACGAAGCCGAAGACAGAGGACTCTTTCAGAGCAAATTTTTTTGAGCAAGGAGGAAAGCACAAAGGAAGCTGGTCTCAACCTGAGAAAACCAATTCACCCTTTGTAAAACCCTCCCTACACCCCCACAAGTGAGAAAATTTCATCAGTCCCTGAAGT-GCAGAAAGTAGACCCTTCCCATCTGTAGCCAAAATGTGGTGCGACTGTTTAATCCAGATACGAATTTTGGAGAACATTGTAAA---CCCAGCAGGGGCGTAAGGGAGAGTAGGGAGAAGTTTGTCCCTAATGTACAGGTTATGTTCTTACTATACTAGAAAGGCAAGTGGCTGGGAACT
s panTro5.chr6              28980139 830 + 175400573 acacaaagaaacttttggagt---tgataagtgtgtttattaccctgattgtggaaatagcattataaatgtatgcatatgtcctcactca-ta---tgcttaccttcaacatgtgtagggg---------ttttgcatatatcaactgtacttcaataaagttgttAATAACTCCTGAAAAACAACCAAACAAGCAAAGACAAGAGGTTAATTCACAACACTTGACAAAAACAAAGAGTGACAAAGGT-----AGCAGTTTTGCACAAG----------GTTGCGTCCAACATCTGGATTTGG-AAATGTGGCAGCGGCTTCATCGGCGACTCTACAGCTATGGGTTTTT------TTGttt--------ttgattttttatagagacgggat---g------gggg-----ggggggtcggtcttctccctgtgttgcccaggctggtcttgaattcctgggcttaagcaatactcccgcctccgcctcccaaagtgctcggattactggtgtttgccgccaagcctgacTAGCTCTGGTTTTAAAGACAACACAAACGAAGCCGAAGACAGAGGACTCTTTCAGAGCAAATTTTTTTGAGCAAGGAGGAAAGCACAAAGGAAGCTGGTCTCAACCTGAGAAAACCAATTTAGCCTTTGTAAAACCCTCCCTACACCCCCACAAGTGAGAAAATTTCATCAGTCCCTGAAGT-GCAGAAAGTAGACCTTTCCCATCTGTAGCCAAAATGCGGTGCGACTGTTTAATCCAGATACGAATTTTGGAGAACATTGTAAA---CCCAGCAGGGGCGTAAGGGAGAGTAGGGAGAAGTTTGTCCCTAATGTACAGGTTATGTTCTTACTACACTAGAAAGGCAAGTGGCTGGGAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29223974 829 + 173848474 acacaaagaaacttttggagt---tgataagtctgtttattaccctgattgtggaaatagcattataaatgtacgcatatgtcctcactca-ta---tgcttaccttcaacatgtgtagggg---------ttttgcatatatcaactgtacttcaataaagttgttAATAACTCCTGAAAAACAACCAAACAAGCAAAGACAAGAGGTTAATTCACAACACTTGACAAAAACAAAGAGTGACAAAGGT-----AGCAGTTTTGCACAAG----------GTTGCGTCCAACATCTGGATTTGG-AAATGTGGCAGCGGCTTCATCGGCGACTCTACAGCTATGGGTTTTT------TTGttt--------ttgattttttatagagacgggat---g------ggg------ggggggtcggtcttctccctgtgttgcccaggctggtcttgaattcctgggcttaagcaatactcccgcctccgcctcccaaagtgctcgtattactggtgtttgccgccaagcctgacTAGCTCTGGTTTTAAAGACAACACAAACGAAGCCGAAGACAGAGGACTCTTTCAGAGCAAATTTTTTTGAGCAAGGAGGAAAGCACAAAGGAAGCTGGTCTCAACCTGAGAAAACCAATTTAGCCTTTGTAAAACCCTCCCTACACCCCCACAAGTGAGAAAATTTCATCAGTCCCTGAAGT-GCAGAAAGTAGACCTTTCCCATCTGTAGCCAAAATGCGGTGCGACTGTTTAATCCAGATACGAATTTTGGAGAACATTGTAAA---CCCAGCAGGGGCGTAAGGGAGAGTAGGGAGAAGTTTGTCCCTAATGTACAGGTTATGTTCTTACTACACTAGAAAGGCAAGTGGCTGGGAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5012674 836 +   6154872 acacaaagaaacttttggagttgatgataagtgtgtttattaccctgactgtggaaatagcattataaatgtgtgcatatgtcctcactca-ta---tgcttaccttcaacatgtgtagggg----------tttgcacatatcaactgtacttcaataaagttgttAATAACTCCTGAAAAACAACCGAACAAGCAAAGACAAGAGGTTAATTCACAACACTTGACAAAAACAAAGAGTGACAAAGGT-----AGCAGTTTTGCACAAG----------GTTGCGTCCAACATCTGGATTTGGAAAATGTGGCAGCGGCTTCATCGGCGACTCTACAGCTATGGGTTTTT------TTGttt--------ttgattttttatagagacgggat---g------gggggaggtggcgggtcggtcttctccctgtgttgcccaggctggtcttgaattcctgggcttaagcaatactcccgcctccgcctcccaaagtgctccgattactggtttttgccgccaagcctgacTAGCTCTGGTTTTAAAGACAACACAAACGAAGCCGAAGACAGAGGACTCTTTCAGAGCAAATTTTTTTGAGCAAGGAGGAAAGCACAAAGGAAGCTGGTCTCAACCTGAGAAAACCAGTTCAGCCTTTGTAAAACCCTCCCTACACCCCCACAAGT--GAAAATTTCATCAGTCCCTGATGT-GCAGAAAGTAGACCCTTCCCATCTGTAGCCAAAATGTGGTGCGACTGTTTAATCCAGATACGAATTTTGGAGAACATTGTAAA---CCCGGCAGGGGCGTAAGCGAGAGTAGGGAGAAGTTTGTCTCTAATATACAGGTTATGTTCTTACTATACTAGAAAGGCAAGTGGCTGGGAACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73947796 839 + 122973662 acacaaagaaacttttggagt---tgataaatgtgtttattaccctaattgtggaca-agcattataaatgtaagcatatgtcctcactca-taaattgcttacattcaacgtgtgtagggg---------ttttgcatatatcagctgtacttcaataaagttgttAATAACTCCTGAAAAACAACCAAACAAGCAAAGACAAGAAGTTAATTCACAACACTTGACAAAAACAAAGAGTGACAAAGGT-----AGCAGTTTTGCACAAG----------GTTGCGTCCAACATCTGGATTTAG-AAATGTGGCAGCGGCTTCATCGGCAACTCTACAGCTCTGGGTTTTT------TTGTTC--------TTGATTTTTTATAGAGACGGGATCCGG------GGAGGGGGGGGCGGGTCTGTCTtctccctatgttgcccaggctggtcttgaactcctgggtttaagtgatcctcccgcttcggcctcccaaagtgctgggattacaggtgtttgccgccaagcctgacTAGCTCTGGTTTTAAAGACAACACAAAAAAAGCCGAAGACAAAAGACTCTGTCAGAGCAAA-TTTTTTGAGCAAGGAGGAAAGCACAAACGAAGCTGGTCTCAACCTGAGAAAACCAATTCAGCATTTGTAAAACCCTCCCTACACCCGCACAAGTGAGAAAATTTCATCAGTCCCTGAAGT-GCAGAAAGTAGACTCTTCCCGTCTTTAGCCAAAATGTAGTGCGACTGTTTAATCCAGATACAAATTTTGGAGAACATTGTAAA---CCCGGCAGGGGCGTAAGGGAGAGTACGGAGAAGTTTGTCCCTAATCTACAGATTATGTTCTTACTACACTAGAAAGGCAAGTGGCTGGGAACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29160346 832 + 172585720 acacaaagaaacttttggagt---tgataaatgtgtttattaccctgattgtggaaatagcattataaatgtatgcatatgtcctcactca-caaattgcttaccttcaacttgtgtagggg---------ttttgcatatatcaactgtacttcaataaagttgttATTAACTCCTGAAAAACAACCATGCAAGCAAAGACAAGAGGTTAATTCACAACGCTTGACAAAAACAAAGAATGACAAAGGT-----GGCAGTTTTGCACATG----------GTTGCGTCCAACATCTGGATTTGG-AAACGTGGCAGCGGCTTCATCAGCGACTCTACAGCTCTGTTTTTTT------TTGtttgtttg-------ttttttatagagatgggat---g------gggg-----ggcgggtctgtcttctccctatgttgcccaggctggtcttgaactccggggcttaagcgatcctccctcctcggcctcccaaagtgcttggattacaggtctttgccgccaagcctggcTAGCTCTGGTTTTAAAGACAATACAAAAGAAGACGAAGACAGAGGACTCTTTCAGAGCAAATTTTTTTGAGCAAGGAGGAAAGCACAAAGGAAGCTGGGCTCAACCTGAGAAAACCAATTCAGCCTTTGTAAAACCTTCCCTACTCCCGCACGAGT--GAAAATTTCATCAGTCTCTGAAGT-GCAGAAAGTAAACTCTTTCTGCCTTTAGCCAAAATGTGGTGCGACTGTTGAATCCAGATACAAATATTGGAGAACACTGTAAA---CCTGGCAGGGGTGTAAGGGAGAGTACGGAGAAGTTTATCCCTAATCTACAGGTTATGTTCTTACTATACTAGAAAGGCAAGTGGCTGGGAACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28850354 831 - 170955103 acacaaagaaacttttggagt---tgataaatgtgtttattaccctgattgtggaaatagcattataaatgtatgcatatgtcctcactca-caaattgcttaccttcaacttgtgtagggg---------ttttgcatatatcaactgtacttcaataaagttgttATTAACTCCTGAAAAACAACCATGCAAGCAAAGACAAGAGGTTAATTCACAACGCTTGACAAAAACAAAGAGTGACAAAGGT-----GGCAGTTTTGCACATG----------GTTGCGTCCAACATCTGGATTTGG-AAACGTGGCAGCGGCTTCATCAGCGACTCTACAGCTCTG-TTTTTT------TTGtttgtttg-------ttttttatagagatgggat---g------gggg-----ggcgggtctgtcttctccctatgttgcccaggctggtcttgaactccggggcttaagcgatcctccctcctcggcctcccaaagtgcttggattacaggtctttgccgccaagcctggcTAGCTCTGGTTTTAAAGACAATACAAAAGAAGACGAAGACAGAGGACTCTTTCAGAGCAAATTTTTTTGAGCAAGGAGGAAAGCACAAAGGAAGATGGGCTCAACCTGAGAAAACCAATTCAGCCTTTGTAAAACCTTCCCTACACCCGCACGAGT--GAAAATTTCATCAGTCCCTGAAGT-GCAGAAAGTAAACTCTTTCTGCCTTTAGCCAAAATGTGGTGCGACTGTTGAATCCAGATACAAATATTGGAGAACACTGTAAA---CCTGGCAGGGGTGTAAGGGAGAGTACGGAGAAGTTTATCCCTAATCTACAGGTTATGTTCTTACTATACTAGAAAGGCAAGTGGCTGGGAACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1822473 838 -   2996164 acacaaagaaacttttggagt---tgataaatgtgtttattaccctgattgtggaaatagcattataaatgtatgcatatgtcctcactca-caaattgcttaccttcaacttgtgtagggg---------ttttgcatatatcaactgtacttcaataaggttgttATTAACTCCTGAAAAACAACCATGCAAGCAAAGACAAGAGGTTAATTCACAACGCTTGACAAAAACAAAGAGTGACAAAGGT-----GGCAGTTTTGCACATG----------GTTGCGTCCAACATCTGGATTTGG-AAATGTGGCAGCGGCTTCATCAGTGACTCTACAGCTCTG-tttttt------ttgtttgtttgttttttattttttATAGCGATGGGAT---G------GGGG-----GGCGGGTCTGTCTtctccctatgttgcccaggctggtcttgaactccgaggcttaaccgatcctccctcctcggcctcccaaagtgcttggattacaggtctttgccgccaagcctggcTAGCTCTGGTTTTAAAGACAATACAAAAGAAGACGAAGACAGAGGACTCTTTCAGAGCAAATTTTTTTGAGCAAGGAGGAAAGCACAAAGGAAGCTGGGCTCAACCTGAGAAAACCAATTCAACCTTTGTAAAACCTTCCCTACACCCGCACGAGT--GAAAATTTCATCAGTCCCTGAAGT-GCAGAAAGTAAACTCTTTCTGCCTTTAGCCAAAATGTGGTGCGACTGTTGAATCCAGATACAAATATTGGAGAACACTGTAAA---CCTGGCAGGGGTGTAAGGGAGAGTACGGAGAAGTTTATCCCTAATCTACAGGTTATGTTCTTACTATACTAGAAAGGCAAGTGGCTGGGAACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1717607 840 -   2157725 acacaaagaaacttttggagt---tgataaatgtgtttattaccctgattgtggaaatagcattataaatgtatgcatatgtcctcactca-caaatagcttaccttcaacttgtgtagggg---------ttttgcatatatcaactgtacttcaataaagttgttATTAACTCCTGAAAAACAACCGTGCAAGCAAAGACAAGAGGTTAATTCACAACACTTGACAAAAACAAAGAGTGACAAAGGT-----GGCAGTTTTGCACATG----------GTTGCGTCCAACATCTGGATTTGG-AAATGTGGCAGCGGCTTCATCAGCGACTCTACAGCTCTGATTTTTT------TTGTTTGTTTTGtttttattttttatagagatgggat--gg------gggg-----ggcgggtctgtcttctccttatgttgcccaggctggtcttgaactcctgggcttaagcgatcctccctcctcggcctcccaaagtgcttggattacaggtctttgccgccaagcctggcTAGCTCTGGTTTTAAAGACAATACAAAAGAAGACGAAGACAGAGGACTCTTTCAGAGCAAATTTTTTTGAGCAAGGAGGAAAGCACAAAGGAAGCTGGGCTCAACCTGAGAAAACCAATTCAGCCTTTGTAAAACCTTCCCTACACCCGCACCAGT--GAAAATTTCATCAGTCCCTGAAGT-GCAGAAAGTAAACTCTTTCTACCTTTAGCCAAAGTGTGCTGCGACTGTTGAACCCAGATACAAATATTGGAGAACACTGTAAA---CCCGGCAGGGGTGTAAGGGAGAGTACGGAGAAGTTTATCCCTAATCTACAGGTTATGTTCTTACTATACTAGAAAGGCAAGTGGCTGGGAACT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28166457 821 -  71996105 acac----aaacttttggagt---tgataaatgtgtttattaccctgattgtggaaatagcattataaatgtatgtatatgtcctcactca-caaattgcttacattcaacttgtgtagggg---------ttttgcatatatcaactgtacttcaataaagttgttATTAACTCCTGAAAAACAACCAAACAAGCAAAGACAAGAGGTTAATTCACAACACTTGACAAAAACAAAGAGTGACAAAGGT-----GGCAGTTTTGCACATG----------GTTGCGTCCAACATCTGGATTTGG-AAATGTGGCAGCGGCTTCATCGGCGACCCTACAGCTCTG-Atttgt------ttttgtttttgtttttgattttttATAGAGATGAGAT---GGGGGGCGGGG-----GGTGGGTCTGTCTtctccctatgttgccggggctggtcttgaa-------------------ctcccgcctcggcctcccaaagtgcttggattacaggtgtttgctgccaagcctggcTAGCTCTGGTTTTAAAGACAATACAAAAGAAGACGAAGACAGAGGACTCTTTGAGAGCAAATTTTTTTGAGCAAAGAGGAAAGCACAAAGGAAGCTGGGCTCAACCTGAGAAAACCAATTCAGCCTTTGTAAAACCTTCCCTACACCCGCACGAGT--GAAAATTTCATCAGTCCCTGAAGT-GCAGAAAGTAAACTCTTTCCACCTTTAGCCAAAATGTGGTGCGACTGTTTAATCCAGATACGAATTTTGGAGAACACTGTAAA---CCCGGCAGGGGTGTAAGGGAGAGTGCGGAGAAGTTTATCCCTAATCTACAGGTTATGTTCTTACTATACTAGAAAGGCAAGTGGCTGGGAACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1806112 839 +   2316924 acacaaagaaacttttagagt---tgataaatgtgtttgttaccctgattgtggaaatagcattataaatgtatgcatatgtcctcactca-caaattgcttaccttcaacttctgtagggg---------ttttgcatatatcaactgtacttcaataaagttgttATTAACTCCTGAAAAACAACCATGCAAGCAAAGACAAGAGGTTAATTCACAACGCTTGACAAAAACAAAGAGTGACAAAGGT-----GGCAGTTTTGCACATG----------GTTGCGTCCAACATCTGGATTTGG-AAATGTGGCAGCGGCTTCATCAGCGACTCTACAGCTCTGTTTTTGT------TTGTTTGTTTGttttttattttttatagagatgggat---g------gggg-----aacgggtatgtcttctccctatgttgcccaggctggtcttgaactccggggcttaagcgatcctccctcctcggcctcccaaagtgcttggattacaggtctttgccgccaagcctggcTAGCTCTGGTTTTAAAGACAATACAAAAGAACACGAAGACAGAGGACTCTTTCAGAGCAAATTTTTTTGAGCAAGGAGGAAAGCACAAAGGAAGCTGGGCTCAACCTGAGAAAACCAATTCAGCCTTTGTAAAACCTTCCCTACACCCGCTCGAGT--GAAAATTTCATCAGTCCCTGAAGT-GCAGAAAGTAAACTCTTTCTGCCTTTAGCCAAAATGTGGTGCGACTGTTGAATCCAGATACAAATATTGGAGAACACTGTAAA---CCCGGCAGGGGTGTAAGGGAGAGTACGGAGAAGTTTATCCCTAATCTACAGGTTATGTTCTTACTATACTAGAAAGGCAAGTGGCTGGGAACT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1700946 851 -   3067355 acacaaagaaacttttggagt---tgataaatgtgtttattaccctgattgtggaaatagtattataaatgtatgcatatgtcctcactca-caaattgcttacattcaacttgtgtagggg---------ttttgcatatatcaactgtacttcaataaagttgttATTAACTCCTGAAAAACCACCAAACAAGAAAAGACAAGAGGTTAATTCACAACACTTGACAAAAACAAAGAGTGACAAAGGT-----GGCAGTTCTGCACATG----------ATTGCGTCCAACATCTGGATTTGG-AAATGTGGCAGCGGCTTCATCAGCGATCCTACAGCTCTGGttttttgttttattttgtttttgtttttgattttttATAGAGATGGGAT---GGGGGGCGGGG-----GGCGGGTCTGTCTtctccctatgttgcccaggctggtcttgaactcctgggcttaagtgatcctcccgcctcggcctcccaaagtgcttggattacaggtgtttgccgccaagcctggcTAGCTCTGGTTTTAAAGACAATACAAAAGAAGACGAAGACAGAGGACTCTTTCAGAGCAAATTTTTTTGAGCAAGGAGGAAAGCACAAAGGAAGCTAGGCTCTACCTGAGAAAACCAATTCAGCCTTTGTAAAACCTTCCCTACACCCTCACGAGT--GAAAATGTCATCAGTCCCTGAAGT-GCAGAAAGTAGACTCTTTCCACCTTTAGCCAAAATGTGGTGCGACTGTTTAATCCACATACGAATTTTGGAGAAAACTGTAAA---CCCAGCAGGGGTGTAAGGGAGAGTATGGAGAAGTTTATCCCTAATCTACAGGTTATGTTCTTACTATACTAGAAAGGCAAGTGGCTGGGAACT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1467708 680 -   2232465 atatataggaacatgtaaagt---tgatgagtgtgtttattaactttattgt----------------ctatgtatatatgtccaaattcatcaaattgtatgcattcaacatgtgtagggttcgttttctttttgtatgtatca-ttatatctcaataaatttgtta--aaaTTGTCAAAGAAAAT----CAAACAAAGAGAAAAAGTTAATTCACAGTCTATAACCAAATTAAA-------AGAGCTCTCTGGACAATTTTACACACTCTTATGAGCCCTTGTGTGTAAAATCTAGATTAGG-AGACGCTGCAGCGGCTTTATC--------------------TTTCC------CCATTCCTCTGGCTTTGA-AGCCAATATAAATGGGGA---G------GAAG--------------------------------ACAGAGAGAGCGGGAA-----------AAG-------------GCGGACGTTCACATTGC----------------TGCAGC------------------------------------------------------GTCTTTTTCTGAGCAAGTCTTTTTGTGCAACGAGAAAAGCACAAAGGAAACTGAG--CAAACTG-GGAAACAGATTCCGTCTTTGT-AAACACTCCTTACACCTGAACCAGTGCGAAAATTTCATCAGTCCATGGGGGAGCTTAAAGCAGACACTTCCCACCATTAGCCAAAATGTGGTGCGACTGTTG--TTTAGATACGAATTTTGTTAAACATTCTAAACATCCGTACGGAGGCGGGCGGAACAGTGCGGAGAAG------ACTGATGAAC------TGTTATCTCTGTACTAGGAAGGCAAGTGGCTGGGAACT
i otoGar3.GL873742         I 44 I 20
e saiBol1.JH378348            120707 1697 -    375362 M
e aotNan1.NW_018494050v1       70903   2 -    285216 I
e cebCap1.NW_016108108v1      123724   2 -    373274 I
e calJac3.chr4             171303270   0 - 171630274 C

a score=280515.000000
s hg38.chr6_GL000254v2_alt      3925 50 +   4827813 GAAATGAGCTGAGGAGTGGACGCAAGGGAAGGCTTTGAAAAGGAAGGAAG
s panTro5.chr6              28980969 50 + 175400573 GAAATGAGCTGAGGAGTGGACGCAAAGGAAGGCTTTGAAAAGGAAGGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29224803 50 + 173848474 GAAATGAGCTGAGGAGTGGACGCAAAGGAAGGCTTTGAAAAGGAAGGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5013510 50 +   6154872 GAAATGAGCTGAGGAGTGGACGCAAGGGAAGGCTTTGAAAAGGAAGGAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73948635 50 + 122973662 GAAATGAGCTGAGGAGTGGACGCAAGGGAAGGGTTTGAAAAGGCAGGAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29161178 50 + 172585720 GAAAAGATCTGAGGAGTGGATGCAAGGGAAGGCTTTGAGAAGGAAGGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28851185 50 - 170955103 GAAAAGATCTGAGGAGTGGATGCAAGGGAAGGCTTTGAGAAGGAAGGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1823311 50 -   2996164 GAAAAGATCTGAGGAGTGGATGCAAGGGAAGGCTTTGAGAAGGAAGGAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1718447 50 -   2157725 GAAATGATCTGAGGAGTGGATGCAAGGGAAGGCTTTGAGAAGGAAGGAAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28167278 50 -  71996105 GAAATGATCTGAGGAGTGGATGCAAGGGAGGGCTTTCAGAAGGAAGGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1806951 50 +   2316924 GAAAAGATCTGAGGAGTGGATGCAAGGGAAGGCTTTGAGAAGGAAGGAAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1701797 50 -   3067355 GAAATGATCTGAGGAGTGGACGCAAGGGAAGGCTTTGAGAAGGAAGGAAG
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468388 20 -   2232465 I
e aotNan1.NW_018494050v1       70903  2 -    285216 I
e cebCap1.NW_016108108v1      123724  2 -    373274 I
e calJac3.chr4             171303270  0 - 171630274 C

a score=1292124.000000
s hg38.chr6_GL000254v2_alt      3975 216 +   4827813 GGCTCTTGGAGCCGGGAGGGATAACACTGAGTGGAGGAGAGAAGAAGC---AGCGGAGAAGAAGGCAGAAGAAAAATCGGGGACGCGTCTTTAAAGA-CGGATAGTATTGAG---------ACAAGCGTGGAGGAAGAAAGCAGCCAAGCGCCGCGTCTCTGCCAAGCTTTCTCTAGGCCCTGGGGAAGAGAGAAGGCTCTAGGTGAGTGGTTTCAAAGTGTATATCCC
s panTro5.chr6              28981019 216 + 175400573 GGCTCTTGGAGCCGGGAGGGATAACACTGAGTGGAGGAGAGAAGAAGC---AGCGGAGAAGAAGGCAGAAGAAAAATCGGGGACGCGTCTTTAAAGA-CGGATAGTATTGAG---------ACAAGCGTGGAGGAAGAAAGCAGCCAAGCGCCGCGTCTCTGCTAAGCTTTCTCTACGCCCTGGGGAAGAGAGAAGGCTCTAGGTGAGTGGTTTCAAAGTGTATATCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29224853 216 + 173848474 GGCTCTTGGAGCCGGGAGGGATAACACTGAGTGGAGGAGAGAAGAAGC---AGCGGAGAAGAAGGCAGAAGAAAAATCGGGGACGCGTCTTTAAAGA-CGGATAGTATTGAG---------ACAAGCGTGGAGGAAGAAAGCAGCCAAGCGCCGCGTCTCTGCTAAGCTTTCTCTACGCCCTGGGGAAGAGAGAAGGCTCTAGGTGAGTGGTTTCAAAGTGTATATCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5013560 216 +   6154872 GGCTCTTGGAGCCGGGAGGGATAACACTGAGTGGAGGAGAGAAGAAGC---AGCGGAGAAGAAGGCAGAAGAAAAATCGGGGACGCGTCTTTAAAGA-CGGATAGTATTGAG---------ACAAGCGTGGAGGAAGAAAGCAGCCAAGCGCCGCGTCTCTGCCAAGTTTTCTCTAGACCCTGGGGAAGAGAGAAGGCTCTAGGTGAGTGGTTTCAAAGTGTATATCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73948685 213 + 122973662 GGCTCTTGGCGCCAGGAGGGATGAAACTGAGTGGAGGAGAGAAGCAGT---AGCGG---AGAAGGCAGAAAAAAAATCCGGGATGCGTCTTTAAAGA-CGGATAGTATTGGG---------AGAAGCGTGGAGGAAGAAAGCAGCCAAGCGCCGCGTCTCTGCCAAGCTTTCTCTAGGCCCTGGGGAAGAGAGAAGGCTCTAGGTGAGTGGTTTCAAAGTGTATATCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29161228 216 + 172585720 GGCTCTTGGCGCCGGGAGGGATGAAACTGAGTGGAGGAGAGACGATGC---AGCGGAGAATAATGCAGAAGAAAAATCGGGGATGCGTCTTTAAAGA-TGGATAGTATTGGG---------ACAACCGCGGAGGAAGAAAGCAGCCATGCGCCGCGTCTCTGCCAAGCTTTCTCTACGCTCTGGGGAAGAGAGAAGGCTCTAGGGGAGTGGTTTCAAAGTGTGTATCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28851235 216 - 170955103 GGCTCTTGGCGCCGGGAGGGATGAAACTGAGTGGAGGAGAGACGATGC---AGCGGAGAATAATGCAGAAGAAAAATCGGGGATGCGTCTTTAAAGA-TGGATAGTATTGGG---------ACAACCGCGGAGGAAGAAAGCAGCCATGCGCCGCGTCTCTGCCAAGCTTTCTCTACGCTCTGGGGAAGAGAGAAGGCTCTAGGGGAGTGGTTTCAAAGTGTGTATCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1823361 216 -   2996164 GGCTCTTGGCGCCGGGAGGGATGAAACTGAGTGGAGGAGAGACGATGC---AGCGGAGAATAATGCAGAAGAAAAATCGGGGATGCGTCTTTAAAGA-TGGATAGTATTGGG---------ACAACCGCGGAGGAAGAAAGCAGCCATGCGCCGCGTCTCTGCCAAGCTTTCTCTACGCTCTGGGGAAGAGAGAAGGCTCTAGGGGAGTGGTTTCAAAGTGTGTATCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1718497 216 -   2157725 GGCCCTTGGCGCCGGGAGGGATGAAACTGAGTGGAGGAGAGAAGAAGC---AGCGGAGAATAAGGCAGAAGAAAAATCGGGGATGCGTCTTTAAAGA-TGGATAGTATTGGG---------ACAACCGCGGAGGAAGAAAGCAGCCATGCGCCGCGTCTCTGCCAAGCTTTCTCTACGCCCTGGGGAAGAGAGAAGGCTCTAGGGGAGTGGTTTCAATGTGTGTATCCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28167328 216 -  71996105 GGCTCTTGGCGCCGGGAGGGATGAAACTGAGTGGAGGAGAGAAGAAGC---AGCGGAGAATAAGGCAGAAGAAAAATCGGGGATGCGTCTTTAAAGA-TGGATAGTATTGGG---------ACAAGAGCGGAGGAAGAAAGCAGCCATGTGCCGCGTCTCTGCCAAGCTTTCTCTACGCCCTGGGGAAGAGAGAAGGCTCTAGGGGAGTGGTTTCAAAGTGTGTATCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1807001 216 +   2316924 GGCTCTTGGCGCTAGGAGGGATGAAACTGAGTGGAGGAGAGAAGAAGC---AGCGGAGAATAAGGCAGAAGAAAAATCGGGGATGCGTCTTTAAAGA-TGGATAGTATTGGG---------ACAAGCGCGGAGGAAGAAAGCAGCCATGCGCCGCGTCTCTGCCAAGCTTTCTCTACGCCCTGGGGAAGAGAGAAGGCTCTAGGGGAGTGGTTTCAAAGTGTGTATCCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1701847 216 -   3067355 GGCTCTTGGCGCCGGGAGGGACGAAACTGAGTGGAGGAGAGAAGAAGC---AGCAGAGAATAAGGCAGAAGAAAAATCGTGGATGCGTCTTTAAAGA-TGGATAGTATTGGG---------ACAAGCGTGGAGGAAGAAAGCAGCCATGCGCCGCGTCTCTGCCAAGCTTTCTCTACGCCCTGGGGAAGAGAGAAGGCTTTAGGTGAGTGGTTTCAAAGTGTGTATCCC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1468408 216 -   2232465 GGCTCTTGGTGGGAAGAAGGTTGAAGATGAGTGGGGAGAAGCAGCCACGGAGGCGGAGAAGGAAGAGGAAAAAGAAACTGGGTTTGGTCTCCAAAGACCATAGGGTGTGCGGCGGAGAACCACAGGGGCAGAGGAAGAGTGTGACCAAGTCCCTCATCTCTATCATGCTTTCTCAAGACCCTCGAGAAAAAGGAGG-------------GATTTCAAAGTTTACTCCCC
i otoGar3.GL873742         I 20 I 119
e saiBol1.JH378348            120707 1697 -    375362 M
e aotNan1.NW_018494050v1       70903   2 -    285216 I
e cebCap1.NW_016108108v1      123724   2 -    373274 I
e calJac3.chr4             171303270   0 - 171630274 C

a score=3128766.000000
s hg38.chr6_GL000254v2_alt      4191 562 +   4827813 ACAGAAGGGTACGGCTCGTGTTGCCCAAGATTTTGTGACTCTGAGAGTGCCTCACTGCACTGCACTCTCCATCGCAGGAAACAGGCTGAGCATTTTCGAGGGCGTGTGGTTGAGTATTCGTGGAGCAGTAGCCCCTGGTATTGGAGGTTTGAGGAAAGTGACGTTGTGTCAGTTCTCATGTGGAAGCAGCCTGCAGCTTTGATGCAGGCAGCAACtgtttagtttgtgtttctttttgtttgtttgtttatttTCGCGTGTTTGGGTTTAAAATACAAGAGAAAGAATGAGGAAGAAAGGTTAAGTAGTGACTGAACGTTTTGGGTTAGAGTAGATACCCACTAAAACCATCGTACTTCTGGCTAGCTCAGCTGGAAATGCATCAGGCCACTAGTCCGGAAATTTAGGAATCACGATCCTGTTCTGATGTAGATACTTTTCATTTTCCCATACTTCTTTTTGATTCATACTCAACAGGCTACTGAACCCAGCTTTCTCCTGGAGCAACCGGGAGGGTATTTGCGGTGCGTTTTGCTGCTTATATTCTCTCTAGTCTCAGCG-------G
s panTro5.chr6              28981235 562 + 175400573 ACAGAAGGGTACGGCTCGTGTTTCCCAAGATTTTGTGGCTCTGAGAGTGCCTCACTGCACTGCACTCTCCATCGCAGGAAACAGGCTGAGCATTTTCGAGGGCATGTGGTTGAGTATTCGTGGAGCAGTAGCCCCTGGTATTGGAGGTTTGAGGAAAGTGACGTTGTGTCAGTTCTCATGTGGAAGCAGCCTGCAGCTTTGATACAGGCAGCAACTATtttgtttgtgtttctttttgtttgtttgtttatttTCGCGTGTTTGGGTTTAAAATACAAGAGAAACAACGAGGAAGAAAGGTTAAGTAGTGACTGAACGTTTTGGGTTAGAGTGGATACCCACTAAAACCATCGTACTTCTGGCTAGCTCAGCTGGAAATGCATCAGGCCACTAGTCCGGAAATTTAGGAATCACGATCCTGTTCTGATGCAGATACTTTTCATTTTCCCATACTTCTTTTTGATTCATACTCAACAGGCTACTGAACCCAGCTTTCTCCTGGAGCAACCGGGAGGGTATTTGCGGTGCGTTTTGCTACTTATATTCTCTCTAGTCTCAGCG-------G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29225069 562 + 173848474 ACAGAAGGGTACGGCTCGTGTTTCCCAAGATTTTGTGGCTCTGAGAGTGCCTCACTGCACTGCACTCTCCATCGCAGGAAACAGGCTGAGCATTTTCGAGGGCATGTGGTTGAGTATTCGTGGAGCAGTAGCCCCTGGTATTGGAGGTTTGAGGAAAGTGACGTTGTGTCAGTTCTCATGTGGAAGCAGCCTGCAGCTTTGATACAGGCAGCAACTATtttgtttgtgtttctttttgtttgtttgtttatttTCGCGTGTTTGGGTTTAAAATACAAGAGAAACAACGAGGAAGAAAGGTTAAGTAGTGACTGAACGTTTTGGGTTAGAGTGGATACCCACTAAAACCATCGTACTTCTGGCTAGCTCAGCTGGAAATGCATCAGGCCACTAGTCCGGAAATTTAGGAATCACGATCCTGTTCTGATGCAGATACTTTTCATTTTCCCATACTTCTTTTTGATTCATACTCAACAGGCTACTGAACCCAGCTTTCTCCTGGAGCAACCGGGAGGGTATTTGCGGTGCGTTTTGCTACTTATATTCTCTCTAGTCTCAGCG-------G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5013776 561 +   6154872 ACAGAAGGATACGGCTCGTGTTGCCCAAGATTTTGTGACTCTGAGAGTGCCTCACTGCACTGCACTCTCCATCGCAGGAAACAGGCTGAGCATTTTCGAGGGCGTGTGGTTGAGTATTCTTGGAGCAGTAGCCCCTGGTATTGGAGGTTTGAGGAAAGTGACGTTGTGTCAGTTCTCATGTGGAAGCAGCCTGCAGCTTTAATACAGACAGCAACTGTtttgtttgtgtttctttttgtttgtttgtttatttTCGCGTGTTTGTGTTTAAAATACAAGAGAAAGAACGAGGAAGAAAGGTTAAGTAGTGACTGAACGTTTTGGGTTAAAGTGGATACCCACTAAAACCGTCGTACTTCTGGCTAGCTCAGCTGGAAATGCATCAGGACATTAGTCCGGAAATTTAGGAATCACGATCCTGTTCTGATGTA-ATACTTTTCATTTTCCCATACTTCTTTTTGATTCATACTCAACAGGCTACTGAACCCAGCTTTCTCCTGGAGCAACCGGGAGGGTATTTGCGGTGCGTTTTGCTACTTATATTCTGTCTAGTCTCAGCG-------G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73948898 563 + 122973662 ACAGAAGGATACGGCTCGTGTTGCCCAAGATTTTGTGACTCTGAGAGTGCCT-----CACTGCACTCTCCATCGCAGGAAACAGGCTGAGCATTTTTGATGGCGTGTGGTTGAGTATTCGTGGAGCAGTAGCCCCTGGTATTGGAGGTTTGAGGAAAGTGACGTTGTGTCAGTTCTCATGTGGGAGCAGCCTGCAGCTTTGATACAGGCAGCAACTGTtttgtttgtgcttctttttgtttgcttgtttgttttgtcgtgtttgGGTTTAAAATACAAGAGAAAGAATGAGGAA-AAAGGTTAAGTAGTGACTGAACGTTTTGGGTTAGAGTGGATACCCACTAAAACCATCGTACGTCCGGCTAGCTCAGCTGGAAATGCATCAAGCCATTAGTCCGGAAATTTAGGAATCACGATCCTGCTCTGATGTAGATACTTTTCATTTTCCCATACTTCTTTTTGATTCATACTCAACAGGCTACTGAACCCAGCTTTCTCCTGGAGCAACCGGGAGAGTATTTGCGGTGCGTTTTGCTACTTATATACTCTCTTGTCTCAGCGGGTTTCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29161444 553 + 172585720 ACAAAAGGATACGGCTCGTGTTGTCCAAGATTTTGTGACTGTGAGAGTGCCT-----CGCTGCACTCTCCATCGCAGGAAACAGGCTGAGCATTTTCGAGGGCCTATGGTTGAGTATTCGTGGAGCAGTAGCCCCTGGTATTGGAGGTTTGAGGAAAGTGACGTTGTATCAGTTCTCATGTGGGAGCAGCCTGCAGCTTTGATACAGGCAGCAACTGTTTTGTTTGTGCTTCTTTTTGT----TTGTTTATTTTGGCATGTTTGAGTTTAAAACACAAGAGAAACAATGAGGAAGAAAGGTTAAGTAGCGACTGAATGTTTGGGGTTAGAGTGGATACCCACTAAAATCATCGCACTTCTGGCTAGCTCAGCTCGAAATGCATCAGGCCATTCGTCCGGAAATTTAGGAAGCACGATGCTGTTCTGAAGTAGATACTTCCCATTTTCCCATACTTCTTTTTAATTCATACTTAACAGGCTACTGAACCCAGCTTTCTCCTGGAGCAATCGGGGGAGTATTTGCGGTGCGGTTTGCTACTTATATACTCTTTTGTCTCGGCG-------G
i rheMac8.chr4             C 0 I 7
s macFas5.chr4              28851451 553 - 170955103 ACAAAAGGATACGGCTCGTGTTGTCCAAGATTTTGTGACTGTGAGAGTGCCT-----CGCTGCACTCTCCATCGCAGGAAACAGGCTGAGCATTTTCGAGGGCCTATGGTTGAGTATTCGTGGAGCAGTAGCCCCTGGTATTGGAGGTTTGAGGAAAGTGACGTTGTATCAGTTCTCATGTGGGAGCAGCCTGCAGCTTTGATACAGGCAGCAACTGTTTTGTTTGTGCTTCTTTTTGT----TTGTTTATTTTGGCATGTTTGAGTTTAAAACACAAGAGAAACAATGAGGAAGAAAGGTTAAGTAGTGACTGAATGTTTGGGGTTAGAGTGGATACCCACTAAAATCATCGCACTTCTGGCTAGCTCAGCTCGAAATGCATCAGGCCATTCGTCCGGAAATTTAGGAAGCACGATGCTGTTCTGAAGTAGATACTTCCCATTTTCCCATACTTCTTTTTAATTCATACTTAACAGGCTACTGAACCCAGCTTTCTCCTGGAGCAATCGGGGGAGTATTTGCGGTGCGGTTTGCTACTTATATACTCTTTTGTCTCGGCG-------G
i macFas5.chr4             C 0 I 7
s macNem1.NW_012011356v1     1823577 553 -   2996164 ACAAAAGGATACGGCTCGTGTTGTCCAAGATTTTGTGACTGTGAGAGTGCCT-----CGCTGCACTCTCCATCGCAGGAAACAGGCTGAGCATTTTCGAGGGCCTATGGTTGAGTATTCGTGGAGCAGTAGCCCCTGGCATTGGAGGTTTGAGGAAAGTGAAGTTGTATCAGTTCTCATGTGGGAGCAGCCTGCAGCTTTGATACAGGCAGCAACTGTTTTGTTTGTGCTTCTTTTTGT----TTGTTTATTTTGGCATGTTTGAGTTTAAAACACAAGAGAAACAATGAGGAAGAAAGGTTAAGTAGTGACTGAATGTTTGGGGTTAGAGTGGATACCCACTAAAATCATCGCACTTCTGGCTAGCTCAGCTCGAAATGCATCAGGCCATTCGTCCGGAAATTTAGGAAGCACGATGCTGTTCTGAAGTAGATACTTCCCATTTTCCCATACTTCTTTTTAATTCATACTTAACAGGCTACTGAACCCAGCTTTCTCCTGGAGCAATCGGGGGAGTATTTGCGGTGCGGTTTGCTACTTATATACTCTTTTGTCTCGGCG-------G
i macNem1.NW_012011356v1   C 0 I 7
s cerAty1.NW_012001495v1     1718713 553 -   2157725 ACAAAAGTATACGGCTCGTGTTGTCCAAGATTTTGTGACTGTGAGAGTGCCT-----CACTGCACTCTCCATCGCAGGAAACAGGCTGAGCATTTTCGAGGGCGTATGGTTGAGTATTCGTGGAGCAGTAGCCCCTGGTATTGGAGGTTTGAGGAAAGTGACGTTGTATCAGTTCTCACGTGGGAGCAGCCTGCAGCTTTGATACAGGCAGCAACTGTTTTGTTTGTGCTTCTTTTTGT----TTGTTTATTTTGGCATGTTTGAGTTTAAAACACAAGAGAAACAATGAGGAAGAAAGGTTAAGTAGTGACTGAATGTTTGGGGTTAGAGTGGATACCCACTAAAACCATCGCACTTCTGGCTAGCTTAGCTCGAAATGCATCAGGCCATTCGTCCGGAAATTTAGGAAGCACGATGCTGTTCTGAAGTAGATACTTCCCATTTTCCCATACTTCTTTTTAATTCATACTCAACAGGCTACTGAACCCAGCTCTCTCCTGGAGCAATCGGGGGAGTATTTGCGGTGCGGTTTGCTACTTATATACTCTTTTGTCTCAGCG-------G
i cerAty1.NW_012001495v1   C 0 I 7
s chlSab2.chr17             28167544 553 -  71996105 ACAAAAGGATACGGCTCGTGTTGTCCAAGATTTTGTGACTGTGAGAGTGCCT-----CACTGCACTCTCCATCGCAGGAAACAGGCTGAGCATTTTCGAGGGCGTGTGGTTGAGTATTCGTGGAGCAGTAGCTCCTGGTATTGGAGGTTTGAGGAAAGTGACGTTGTGTCAGTTCTCATGTGGGAGCAGCCTGCAGCTTTGATACAGGCAGCAACTGTTTTGTTTGTGCTTCTTTTTGT----TTGTTTATTTTGGCGTGTTTGAGTTTAAAACACAAGAGAAACAATGAGGAAGAAAGGTTAAGTAGTGACTGAATGTTTGGGGTTAGAGTGGATACCCACTAAAACCATCGCACTTCTGGCTAGCTCAGCTCGAAATGCATCAGGCCATTCGTCTGGAAATTTAGGAAGCACGATGCTGTTCTGAAGTAGATACTTCCCATTTTCCCATTCTTCTTTTTAATGCATACTCAACAGGCTACTGAACCCAGCTTTCTCCTGGAGCAATCGGGGGAGTATTTGAGGTGCGGTTTGCTACTTATATACTCTTTTGTCTCAGCG-------G
i chlSab2.chr17            C 0 I 7
s manLeu1.NW_012104165v1     1807217 553 +   2316924 ACAAAAGGATACGGCTCGTGTTGTCCAAGATTTTGTGACTGTGAGAGTGCCT-----CACTGCACTCTCCATCGCAGGAAACAGGCTGAACATTTTCGAGGGCGTATGGTTGAGTATTCGTGGAGCAGTAGCCCCTGGTATTGGAGGTTTGAGGAAAGTGACGTTGTATCAGTTCTCATGTGGGAGCAGCCTGCAGCTTTGATACAGGCAGCAACTGTTTTGTTTGTGCTTCTTTTTGT----TTGTTTATTTTGGCATGTTTGAGTTTAAAACACAAGAGAAATAATGAGGAAGAAAGGTTAAGTAGTGACTGAATGTTTGGGGTTAGAGTGGATACCCACTAAAACCATCGCACTTCTGGCTAGCTCAGCTCGAAATGCATCAGGCCATTCGTCCGGAAATTTAGGAAGCACGATGCTGTTCTGAAGTAGATACTTCCCATTTTCCCATACTTCTTTTTAATTCATACTCAACAGACTGCTGAACCCAGCTCTCTCCTGGAGCAATCGGGGGAGTATTTGCGGTGCGGTTTGCTACTTATATACTCTTTTGTCTCGGCG-------G
i manLeu1.NW_012104165v1   C 0 I 7
s colAng1.NW_012115566v1     1702063 553 -   3067355 ACAAAAGGATACGGCTCGTGTTGCCCAAGATTTTGTGACTGTGAGAGTGCCT-----CACTGCACTCTCCATCAAAGGAAACAGGCTGAGCATTTTCGAGGGCGTGTGGTTGAGTATTCTTGGAGCAGTAGCCCCTGGTATTGGAGGTTTGAGGAAAGTGACGTTGTATCAGTTCTCATCTGGGAGCAGCCTACAGCTTTGATACAGGCAGCAACTGTTTTGTTTGTGCTTCTTTTTGT----TTGTTTATTTTGGCGTGTTTGAGTTTAAAACACAAGAGAAACAATGAGAAATAAAGGTTAAGTAGTGACTGAACATTTTGGGTTAGAGTGGATACCCACTAAAACCATCGCGCTTCTGGCTAGCTCAGCTCGAAATGCATCAGGCCATTCGTCCGGAAATTGAGGAATCACGATGCTATTCTGAAGTAGATACTTCCCATTTTCCCATACTTCTTTTTAATTCATACTCAACAGGCTACTGAACCCAGCTTTCTCCTGGAGCAATCGGGAGAGTATTTGCGGTGCGGTTTGCTACTTATATACTCTTTTGTCTCAGCG-------G
i colAng1.NW_012115566v1   C 0 I 23
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903   2 -    285216 I
e cebCap1.NW_016108108v1      123724   2 -    373274 I
e calJac3.chr4             171303270   0 - 171630274 C

a score=52309.000000
s hg38.chr6_GL000254v2_alt      4753 15 +   4827813 AAGAGACAAGATTTG
s panTro5.chr6              28981797 15 + 175400573 AAGAGACAAGATTCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29225631 15 + 173848474 AAGAGACAAGATTCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5014337 15 +   6154872 AAGAGACAAGATTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73949461 14 + 122973662 AAGAG-CAAGATTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29162004 14 + 172585720 AAGAG-CAATATTTG
i rheMac8.chr4             I 7 I 2
s macFas5.chr4              28852011 14 - 170955103 AAGAG-CAATATTTG
i macFas5.chr4             I 7 I 2
s macNem1.NW_012011356v1     1824137 14 -   2996164 AAGAG-CAATATTTG
i macNem1.NW_012011356v1   I 7 I 2
s cerAty1.NW_012001495v1     1719273 14 -   2157725 AAGAG-CAATATTTG
i cerAty1.NW_012001495v1   I 7 I 2
s chlSab2.chr17             28168104 14 -  71996105 AAGAG-CAATATTTG
i chlSab2.chr17            I 7 I 2
s manLeu1.NW_012104165v1     1807777 14 +   2316924 AAGAG-CAATATTTG
i manLeu1.NW_012104165v1   I 7 I 2
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903  2 -    285216 I
e cebCap1.NW_016108108v1      123724  2 -    373274 I
e calJac3.chr4             171303270  0 - 171630274 C
e colAng1.NW_012115566v1     1702616 23 -   3067355 I

a score=905024.000000
s hg38.chr6_GL000254v2_alt      4768 169 +   4827813 AACGGGGAAAGTCGGATTTGCAGAGAGGTATTCATTCAAGGCTCTTTTCTGCCCTACTGTCAAGTGGATGAACAAAACGCTGACTTAAGATATGAGGAGGATTG--CAGTGTTGAGAGTGCAAAAAGTGTCAAGTCAAAACATGGACATATTTTGCTCATAATGTAG----ATAA
s panTro5.chr6              28981812 169 + 175400573 AACGGGGAAAGTCGAATTTGCAGAGAGGTATTCATTCAAGGCTCTTTTCTGCCCTACTGTCAAGTGGATGAACAAAACGCTGACTTAAGATATGAGGAGGATTG--CAGTGTTGAGAGTGCAAAAAGTGTCAAGTCAAAACATAGACATATTTTGCTCATAATGTAG----ATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29225646 169 + 173848474 AACGGGGAAAGTCGGATTTGCAGAGAGGTATTCATTCAAGGCTCTTTTCTGCCCTACTGTCAAGTGGATGAACAAAACGCTGACTTAAGATATGAGGAGGATTG--CAGTGTTGAGAGTGCAAAAAGTGTCAAGTCAAAACATAGACATATTTTGCTCATAATGTAG----ATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5014352 169 +   6154872 AAAGGGGAAAGTCGGATTTGCAGAGAGGTATTCATTCAAGGCTCTTTTCTGCCCTACTGTCAAGTGGATGAACAAAACGCTGACTTAAGATATGAGGAGGATTG--CAGTGTTGAGAGTGCAAAAAGTGTCAAGTCAAAACATAGACATATTTTGCTCATAATGTAG----ATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73949475 171 + 122973662 AAAGGGGAAAGTTGGATTTGCAGAGAGATATTCCTTCAAGGCTCTTTTCTGCCCTACTGTGAAGTGGATGAACAAAACGCTGACTTAAGATATGAGGAGGATTGCACAGTGTTGAGAGTGCAAAAAGTGTCAAGTCAAAACATAGACATATTTTGCTCATAATGTAG----ATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29162020 167 + 172585720 AACGGGGAAAGTCGGATTTACAGAGAGCTGTTCATTCAAGGCTCTTTTCTGCCCTATTGTCAAGTGGATGAACAAAACACTGACTTAAGATATGAGGAGGATCGCACAGTGTTGAGAGTGTAAAAAGTGTTAAGCCAAAACATAGACATAGTCTGCTCATAATGTAA--------
i rheMac8.chr4             I 2 C 0
s macFas5.chr4              28852027 167 - 170955103 AACGGGGAAAGTCGGATTTACAGAGAGCTGTTCATTCAAGGCTCTTTTCTGCCCTATTGTCAAGTGGATGAACAAAACACTGACTTAAGATATGAGGAGGATCGCACAGTGTTGAGAGTGTAAAAAGTGTTAAGCCAAAACATAGACATAGTCTGCTCATAATGTAA--------
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1     1824153 167 -   2996164 AACGGGAAAAGTCGGATTTACAGAGAGCTGTTCATTCAAGGCTCTTTTCTGCCCTATTGTCAAGTGGATGAACAAAACACTGACTTAAGATATGAGGAGGATCGCACAGTGTTGAGAGTGTAAAAAGTGTTAAGCCAAAACATAGACATAGTCTGCTCATAATGTAA--------
i macNem1.NW_012011356v1   I 2 C 0
s cerAty1.NW_012001495v1     1719289 163 -   2157725 AACGGGGAAAGTCGGATTTACAGAGAGCTGTTCATTCAAGGCTCTTTTCTGCCCTATTGTCAAGTGGATGAACAAAACACTGACTTAAGATATGAGGAGGATCGCACAGTGTTCAGAGTGTAAAAAGTGTTAAGTCAAAACAT----ATAGTTTGCTCATAATGTAA--------
i cerAty1.NW_012001495v1   I 2 C 0
s chlSab2.chr17             28168120 171 -  71996105 AACGGGGAAAGTCGGATTTACAGAGAGCTGTTCATTCAAGGCTCTTTTCTGCCCTATTGTCAAGTGGATGAACAAAATACTGACTTAAGATATGAGGAGGATCGCACAGTGTTGAGAGTGTAAAAAGTGGTAAGTCAAAACATAGACATAGTTTGCTCATAATGTAAATTA----
i chlSab2.chr17            I 2 I 35
s manLeu1.NW_012104165v1     1807793 167 +   2316924 AACGGGGAAAGTCAGATTTACAGAGAGCTGTTCATTCAAGGCTCTTTTCTGCCCTATTGTCAAGTGGGTGAACAAAACACTGACTTAAGATATGAGGAGGATCGCACAGTGTTGAGAGTGTAAAAAGTGTTAAGCCAAAACATAGACATAGTCTGCTCATAATGTAA--------
i manLeu1.NW_012104165v1   I 2 C 0
s colAng1.NW_012115566v1     1702639 167 -   3067355 AACGGGGAAAGTCGGATTTACAGAGAGCTATTCATTCAAGGCTCTTTTCTGCCCTATTGTCAAGTGGATGAACAAAACACTGACTTAAGGTATGAGGAGGATCGCACAGTGTTGAGAGTGTAAAAAGTGTTAAGTCAAAACATAGACGTAGTTTGCTCATAATGTAA--------
i colAng1.NW_012115566v1   I 23 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903   2 -    285216 I
e cebCap1.NW_016108108v1      123724   2 -    373274 I
e calJac3.chr4             171303270   0 - 171630274 C

a score=30030.000000
s hg38.chr6_GL000254v2_alt      4937 6 +   4827813 ATTATT
s panTro5.chr6              28981981 6 + 175400573 ATTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29225815 6 + 173848474 ATTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5014521 6 +   6154872 ATTATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73949646 6 + 122973662 ATTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29162187 6 + 172585720 attatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28852194 6 - 170955103 attatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1824320 6 -   2996164 attatt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1719452 6 -   2157725 ATTATT
i cerAty1.NW_012001495v1   C 0 I 18
s manLeu1.NW_012104165v1     1807960 6 +   2316924 ATTATT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1702806 6 -   3067355 ATTATT
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903 2 -    285216 I
e cebCap1.NW_016108108v1      123724 2 -    373274 I
e calJac3.chr4             171303270 0 - 171630274 C
e chlSab2.chr17             28168291 35 -  71996105 I

a score=23126.000000
s hg38.chr6_GL000254v2_alt      4943 31 +   4827813 TTGGTAGACATAAattttattattattatta
s panTro5.chr6              28981987 29 + 175400573 TTGGTAGACATAAATTTTATTATTATTAT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29225821 31 + 173848474 TTGGTAGACATAAattttattattattatta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5014527 31 +   6154872 TTGGTAGACATAAattttattattattatta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73949652 29 + 122973662 TTGGTAAACATAAAttttattatatttat--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29162193 16 + 172585720 ------------attattattgtattta---
i rheMac8.chr4             C 0 I 6
s macFas5.chr4              28852200 16 - 170955103 ------------attattattgtattta---
i macFas5.chr4             C 0 I 6
s macNem1.NW_012011356v1     1824326 16 -   2996164 ------------attattattgtattta---
i macNem1.NW_012011356v1   C 0 I 6
s manLeu1.NW_012104165v1     1807966 16 +   2316924 ------------ATTATTATTGTAttta---
i manLeu1.NW_012104165v1   C 0 I 6
s colAng1.NW_012115566v1     1702812 13 -   3067355 ---------------GTTGTTGTAtttt---
i colAng1.NW_012115566v1   C 0 I 2
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903  2 -    285216 I
e cebCap1.NW_016108108v1      123724  2 -    373274 I
e calJac3.chr4             171303270  0 - 171630274 C
e chlSab2.chr17             28168291 35 -  71996105 I
e cerAty1.NW_012001495v1     1719458 18 -   2157725 I

a score=35621.000000
s hg38.chr6_GL000254v2_alt      4974 10 +   4827813 tatttattta
s panTro5.chr6              28982016  9 + 175400573 -Atttattta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29225852 10 + 173848474 tatttattta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5014558 10 +   6154872 tatttattta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73949681  8 + 122973662 --ttattttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29162215 10 + 172585720 tatctattta
i rheMac8.chr4             I 6 C 0
s macFas5.chr4              28852222 10 - 170955103 tatctattta
i macFas5.chr4             I 6 C 0
s macNem1.NW_012011356v1     1824348 10 -   2996164 tatttattta
i macNem1.NW_012011356v1   I 6 C 0
s cerAty1.NW_012001495v1     1719476 10 -   2157725 tgtttattta
i cerAty1.NW_012001495v1   I 18 C 0
s manLeu1.NW_012104165v1     1807988 10 +   2316924 tatttattta
i manLeu1.NW_012104165v1   I 6 C 0
s colAng1.NW_012115566v1     1702827 10 -   3067355 tgtttattta
i colAng1.NW_012115566v1   I 2 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903  2 -    285216 I
e cebCap1.NW_016108108v1      123724  2 -    373274 I
e calJac3.chr4             171303270  0 - 171630274 C
e chlSab2.chr17             28168291 35 -  71996105 I

a score=775795.000000
s hg38.chr6_GL000254v2_alt      4984 142 +   4827813 ttttttgagacggactctcgctctgtcgcccaggctggactg-cagtggcgcgatcgcggctctctgcaacttccgcctaccgggatcaagcgattgtcctgcctcagcctcccgagtagctgggagtacaggcgcccgccac
s panTro5.chr6              28982025 142 + 175400573 ttttttgagacggactctcgctctgtcgcccaggctggactg-cagtggcgcgatcgcggctctctgcaacctccgcctaccgggatcaagcgattgtcctgcctcagcctcccgagtagctgggagtacaggcgcccgccac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29225862 142 + 173848474 ttttttgagacggactctcgctctgtcgcccaggctggactg-cagtggcgcgatcgcggctctctgcaacctccgcctaccgggatcaagcgattgtcctgcctcagcctcccgagtagctgggagtacaggcgcccgccac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5014568 143 +   6154872 ttttttgagacggactctcgctctgtcgcccaggctggactgccagtggcgcgatcgcggctctctgcaacctccgcctaccgggatcaagcgattgtcctgcctcagcctcccgagtagctgggagtacaggcgcctgccac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73949689 140 + 122973662 ttttttgagacggactctcg--ctgtcgcccaggctggagtg-cagtggtgcgatctccgcttactgcaacctccgcctaccgggatcaagcgattctcctgcctcagcctcccgagtagctgggattataggcgtccgccac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29162225 142 + 172585720 ttttttgagacggactcttgctctgtcgcccagactggagtg-cagtggcgcgacctcagcttactgcaaactctgcctcccggaatcaagcgattctcctgcctcagcctcccgagtagctgggcttacaggcacccgccac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28852232 142 - 170955103 ttttttgagacggactcttgctctgtcgcccagactggagtg-cagtggcgcgacctcagcttactgcaaactctgcctcccggaatcaagcgattctcctgcctcagcctcccgagtagctgggcttacaggcacccgccac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1824358 142 -   2996164 ttttttgagacggactcttgctctgtcgcccagactggagtg-cagtggctcgaccttagcttactgcaaactctgcctcccggaatcaagcgattctcctgcctcagcctccccagtagctgggcttacaggcacccgccac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1719486 142 -   2157725 ttttttgagacggactctcgctctgtcgcccagactggagtg-cagtggcgcgacctcggcttactgcaaactctgcctcccgggatcaagcgattctcctgcctcagcctcccgagtagctggaattacaggcacccgccac
i cerAty1.NW_012001495v1   C 0 I 14
s chlSab2.chr17             28168326 142 -  71996105 ttttttgagacggactctcgctctgtcgcccagactggagtg-cagtggcgcaacctcggctcactgcaacctccacctcccgggatcaagcgattttcctgccttagcctcccgagtagctgggattacaggcacccgccac
i chlSab2.chr17            I 35 C 0
s manLeu1.NW_012104165v1     1807998 142 +   2316924 ttttttgagacggactcttgctctgtcgcccagactggagtg-cagtggcgcgacctcagcttactgcaaactctgcctcccgggatcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcacccgccac
i manLeu1.NW_012104165v1   C 0 I 6158
s colAng1.NW_012115566v1     1702837 142 -   3067355 ttttttgagagggactctcgctctgtcgctcagactggagtg-cagtggcgcgacctcggcttactgcaacttccgcctcccgggatcaagcgattctcctgcctcaacctcccgagtagctgggattacaggcacccgccac
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903   2 -    285216 I
e cebCap1.NW_016108108v1      123724   2 -    373274 I
e calJac3.chr4             171303270   0 - 171630274 C

a score=55978.000000
s hg38.chr6_GL000254v2_alt      5126 15 +   4827813 cacacccgtttaatt
s panTro5.chr6              28982167 15 + 175400573 cacacccgtttaatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29226004 15 + 173848474 cacacccgtttaatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5014711 15 +   6154872 cacacccgtttaatt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73949829 15 + 122973662 tacgcccggctaatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29162367 15 + 172585720 tacgcctggcttatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28852374 15 - 170955103 tacgcctggctaatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1824500 15 -   2996164 tacgcctggctaatt
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28168468 15 -  71996105 tacgcctggctaatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1814298 15 +   2316924 tacgcctggctaatt
i manLeu1.NW_012104165v1   I 6158 C 0
s colAng1.NW_012115566v1     1702979 15 -   3067355 tacgcctggctaatt
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903  2 -    285216 I
e cebCap1.NW_016108108v1      123724  2 -    373274 I
e calJac3.chr4             171303270  0 - 171630274 C
e cerAty1.NW_012001495v1     1719628 14 -   2157725 I

a score=118327.000000
s hg38.chr6_GL000254v2_alt      5141 21 +   4827813 tttgtatttttagtagagaca
s panTro5.chr6              28982182 21 + 175400573 tttgtatttttagtagagaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29226019 21 + 173848474 tttgtatttttagtagagaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5014726 21 +   6154872 tctgtatttgtagtagagaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73949844 21 + 122973662 tttgtatttttaatagagaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29162382 21 + 172585720 tttgtatttttagtagagaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28852389 21 - 170955103 tttgtatttttagtagagaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1824515 21 -   2996164 tttgtatttttagtagagaca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1719642 20 -   2157725 tttgta-ttttagtagagaca
i cerAty1.NW_012001495v1   I 14 I 11
s chlSab2.chr17             28168483 21 -  71996105 tttgtatttttagtagagaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1814313 21 +   2316924 tttgtatttttagtagagaca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1702994 21 -   3067355 tttgtatttttagtagagaca
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903  2 -    285216 I
e cebCap1.NW_016108108v1      123724  2 -    373274 I
e calJac3.chr4             171303270  0 - 171630274 C

a score=26999.000000
s hg38.chr6_GL000254v2_alt      5162 9 +   4827813 gggtttcac
s panTro5.chr6              28982203 9 + 175400573 gggtttcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29226040 9 + 173848474 gggtttcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5014747 9 +   6154872 gggtttcac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73949865 9 + 122973662 gggtttcac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29162403 9 + 172585720 acatgtcac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28852410 9 - 170955103 acatgtcac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1824536 9 -   2996164 acatgtcac
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28168504 9 -  71996105 acatttcac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1814334 9 +   2316924 acgtgtcac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1703015 9 -   3067355 acatttcac
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903 2 -    285216 I
e cebCap1.NW_016108108v1      123724 2 -    373274 I
e calJac3.chr4             171303270 0 - 171630274 C
e cerAty1.NW_012001495v1     1719662 11 -   2157725 I

a score=851094.000000
s hg38.chr6_GL000254v2_alt      5171 160 +   4827813 catattattcgggctggtctcg-aactcctgaccccaggtgatccgcccgcct--cggtctcccaaa-gtgctggga-----ttacag--gcgtgagccacagcac--ccggccataaatttattaat---atAAAAAATTATTggtcaggagcagtggcttacacct-caaatccc
s panTro5.chr6              28982212 160 + 175400573 catattattcgggctggtctcg-aactcctgaccccaggtgatccgcccgcct--cggtctcccaaa-gtgctggga-----ttacag--gcgtgagccacagcac--ccggccATAAATTTATTAAT---ATAAAAAATTATTggtcaggagcagtggcttacacct-caaatccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29226049 160 + 173848474 catattattcgggctggtctcg-aactcctgaccccaggtgatccgcccgcct--cggtctcccaaa-gtgctggga-----ttacag--gcgtgagccacagcac--ccggccataaatttattaat---atAAAAAATTATTggtcaggagcagtggcttacacct-caaatccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5014756 160 +   6154872 catattattcgggctggtctcg-aactcctgaccccaggtgatccgcccacct--cggtatcccaaa-gtgctggga-----ttacag--gcgtgagccacagcac--ccggccataaatttattaAT---GTAAAAAACTATTggtcaggagcagtggcttacacct-caaatccc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73949874 163 + 122973662 catgttagtcgggctggtctcg-aactcctgaccccaggtgatccgcccgcct--cggtcttccaaa-gtgctggga-----ttacag--gcgtgagccacaacac--ccggccATAAACTTATTAATATCATAAAAAATTATTggtcaggagcagtggctcacacct-caaatccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29162412 167 + 172585720 catgttagtcgggctggtctcg-aactcctgaccccaggtgatccactcgcct--cggtctcccaac-gtgctgggattga-ttacag--gcatgagccacagcgc--tttgccataaatttattaatatcatCAAAAATTATTggtcaggagtagtggctcacacct-caaatccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28852419 167 - 170955103 catgttagtcgggctggtctcg-aactcctgaccccaggtgatccactcgcct--cggtctcccaac-gtgctgggattga-ttacag--gcatgagccacagcgc--ttggccataaatttattaatatcatCAAAAATTATTggtcaggagcagtggctcacacct-caaatccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1824545 167 -   2996164 catgttagtcgggctggtctcg-aactcctgaccccaggtgatccactcgcct--ccgtctcccaac-gtgctgggattga-ttacag--gcatgagccacagcac--ttggccataaatttattaatatcatCAAAAATTATTggtcaggagcagtggctcacacct-caaatccc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1719673 174 -   2157725 catgttagtcgggctggtctcgcaactcctga-cccaggtgatccactcgctcggcggtctcccaactgtgctggcattgatttacaggcgcatgagccacagcgcTATTGGCCATAAATTTTATAATATCCTCAAAAATTATTggtcaggagcagtg--tcacacctccaaatccc
i cerAty1.NW_012001495v1   I 11 I 17
s chlSab2.chr17             28168513 167 -  71996105 catgttagtcgggctggtctcg-aactcctgaccccaggtgatccactcgcct--cggtctcccaac-gtgctgggattga-ttacag--gcatgagccacagcgc--ttggccATAAATTTATTAATATCATCAAAAATTTTTggtcaggagcagtggctcacacct-caaatccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1814343 167 +   2316924 catgttagtcgggctggtctcg-aactcctgaccccaggtgatccactcgcct--cggtctcccaac-gtgctgggattga-ttacag--gcatgagccacagcgc--ttggccATAAATTTATTAATATCATCAAAAATTATTggtcaggagcagtggctcacacct-caaatccc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1703024 167 -   3067355 catgttagtcgggctggtctcg-aactcctggccccaggtgatccacttgcct--cggtctcccaac-gtgctgggattga-ttacag--gcatgagccactgcgc--ttggccATAAATTTATTTATATCATCAAAAATTATTggtcaggagcagtggctcacacct-caaatccc
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903   2 -    285216 I
e cebCap1.NW_016108108v1      123724   2 -    373274 I
e calJac3.chr4             171303270   0 - 171630274 C

a score=63728.000000
s hg38.chr6_GL000254v2_alt      5331 14 +   4827813 agcactttgggaga
s panTro5.chr6              28982372 14 + 175400573 agcactttgcgaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29226209 14 + 173848474 agcactttgcgaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5014916 14 +   6154872 agcactttgggaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73950037 14 + 122973662 agtgctttgggagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29162579 14 + 172585720 agcactttgggagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28852586 14 - 170955103 agcactttgggagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1824712 14 -   2996164 agcactttgggagg
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28168680 14 -  71996105 agcactttgggagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1814510 14 +   2316924 agcactttgggagg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1703191 14 -   3067355 agcactttgggagg
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903  2 -    285216 I
e cebCap1.NW_016108108v1      123724  2 -    373274 I
e calJac3.chr4             171303270  0 - 171630274 C
e cerAty1.NW_012001495v1     1719847 17 -   2157725 I

a score=518747.000000
s hg38.chr6_GL000254v2_alt      5345  97 +   4827813 ccaaagcaggaggatcaattgag--ttcagga-gttggagaccagcctggctaacata-gtgagag-cctgtctctac---a-------aaaaaatagaaaaatta-gccagg
s panTro5.chr6              28982386  97 + 175400573 ccaaagcaggaggatcaattgag--ttcagga-gttggagaccagcctggctaacata-gtgagag-cctgtctctac---a-------aaaaaatagaaaaatta-gccagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29226223  97 + 173848474 ccaaagcaggaggatcaattgag--ttcagga-gttggagaccagcctggctaacata-gtgagag-cctgtctctac---a-------aaaaaatagaaaaatta-gccagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5014930  97 +   6154872 ccaaagcaggaggatcaattgag--ttcagga-gttggagaccagcctggccaacata-gtgagag-cctgtctctac---a-------aaaaaatagaaaaatta-gccagg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73950051  97 + 122973662 ccagagcaggaggatcaactgag--tgcagga-gttggagaccagcctggctaacata-gtgagag-cctgtccctgc---a-------aaaaaatagaaaaatta-gccagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29162593 102 + 172585720 ccaaagcaggaggatcaactgag--ttcagga-gttagagaccagcctggctaacata-gtgagag-cctgtctctac---aagaac--aaaaaaaagaaaaatta-gccagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28852600 102 - 170955103 ccaaagcaggaggatcaactgag--ttcagga-gttagagaccagcctggctaacata-gtgagag-cctgtctctac---aaaaac--aaaaaaaagaaaaatta-gccagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1824726 102 -   2996164 ccaaagcaggaggatcaactgag--ttcagga-gttagagaccagcctggctaacata-gtgagag-cctgtctctac---aaaaac--aaaaaaaagaaaaatta-gccagg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1719864 112 -   2157725 gcaaagcaggaggcatcattgatgcttcaggatgttagagaccagcctggctaacatatgtgagagccctgttgctacgcgaaaaac-aaaaaaaaagaaaaattatgccagg
i cerAty1.NW_012001495v1   I 17 I 23
s chlSab2.chr17             28168694 102 -  71996105 ccaaagcaggaggatcaattgag--ttcagga-gttggagaccagcctggctaacata-atgagag-cctgtctctac---aaaaac--aaaaaaaagaaaaatta-gccagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1814524 104 +   2316924 ccaaagcaggaggatcaattgag--ttcagga-gttagagaccagcctggctaacata-gtgagag-cctgtctctac---aaaaacaaaaaaaaaagaaaaatta-gccagg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1703205 102 -   3067355 ccaaagcaggaggatcaattgag--ttcagga-gttggagaccagcctggctaacata-gtgagag-cctgtctctac---agaaac--aaaaaaaagaaaaatta-gccagg
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903   2 -    285216 I
e cebCap1.NW_016108108v1      123724   2 -    373274 I
e calJac3.chr4             171303270   0 - 171630274 C

a score=19065.000000
s hg38.chr6_GL000254v2_alt      5442 10 +   4827813 tatggtggtg
s panTro5.chr6              28982483 10 + 175400573 tatggtggtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29226320 10 + 173848474 tatggtggtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5015027 10 +   6154872 tatggtggtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73950148 10 + 122973662 tatggaggtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29162695  7 + 172585720 tgtggtg---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28852702  7 - 170955103 tgtggtg---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1824828  7 -   2996164 tgtggtg---
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28168796  7 -  71996105 tgtggtg---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1814628  7 +   2316924 tgtggtg---
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1703307  7 -   3067355 tgtggtg---
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903  2 -    285216 I
e cebCap1.NW_016108108v1      123724  2 -    373274 I
e calJac3.chr4             171303270  0 - 171630274 C
e cerAty1.NW_012001495v1     1719976 23 -   2157725 I

a score=352041.000000
s hg38.chr6_GL000254v2_alt      5452 68 +   4827813 cacacct----gtggtcccagcta--caccagaggccaagg--caggaggattgcctgggc----ctaggagtttgaggt
s panTro5.chr6              28982493 68 + 175400573 cacacct----gtggtcccagcta--caccagaggccgagg--caggaggattgcctgggc----ctaggagtttgaggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29226330 68 + 173848474 cacacct----gtggtcccagcta--caccagaggccgagg--caggaggattgcctgggc----ctaggagtttgaggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5015037 68 +   6154872 catacct----gtggtcccagcta--caccagaggccgagg--caggaggattgcctgggt----ctaggagtttgaggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73950158 68 + 122973662 cacacct----gtggtcccagcta--cgccagaggctgagg--caggaggattgcctgggc----ctaggagtttgaggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29162702 68 + 172585720 cacaact----gtggtcccagcta--cagcagagactgaag--caggaggattgcctgggc----ctaggggtttgaggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28852709 68 - 170955103 cacacct----gtggtcccagcta--cagcagagactgaag--caggaggattgcctgggc----ctaggggtttgaggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1824835 68 -   2996164 cacacct----gtggtcccagcta--cagcagagactgaag--caggaggattgcctgggc----ctaggggtttgaggc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1719999 77 -   2157725 cacacctggtggcggtcccagctagccagcagagactggaggcagggaggattgcctgggc---gctaggggtttgaggc
i cerAty1.NW_012001495v1   I 23 I 20
s chlSab2.chr17             28168803 68 -  71996105 cacacct----gtggtcccagcta--cagcagagactgaag--caggaggattgcctgggc----ctaggggtttgaggc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1814635 72 +   2316924 cacacct----gtggtcccagcta--cagcagagactaaag--cgggaggattgcctgggcctagctaggggtttgaggc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1703314 65 -   3067355 cacacct----gtggtcccagctg--caccagagactgagg--c---aggattgcctgggc----ctaggggtttgaggc
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903  2 -    285216 I
e cebCap1.NW_016108108v1      123724  2 -    373274 I
e calJac3.chr4             171303270  0 - 171630274 C

a score=64676.000000
s hg38.chr6_GL000254v2_alt      5520 14 +   4827813 agcagtgagccatg
s panTro5.chr6              28982561 14 + 175400573 agcagtgagccatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29226398 14 + 173848474 agcagtgagccatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5015105 14 +   6154872 agcagtgagccatg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73950226 14 + 122973662 tgcagtgagccatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29162770 14 + 172585720 tgcagtgagccgtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28852777 14 - 170955103 tgcagtgagccgtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1824903 14 -   2996164 tgcagtgagccgtg
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28168871 14 -  71996105 tgcagtgagccatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1814707 14 +   2316924 tgcagtgagccgtg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1703379 14 -   3067355 tgcagtgagccatg
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903  2 -    285216 I
e cebCap1.NW_016108108v1      123724  2 -    373274 I
e calJac3.chr4             171303270  0 - 171630274 C
e cerAty1.NW_012001495v1     1720076 20 -   2157725 I

a score=712151.000000
s hg38.chr6_GL000254v2_alt      5534 135 +   4827813 cttgcag-tgccactgca-ctccagcct-----gggtgacagggcgag----acctcaactcaaaaaataa--ataaaataaactttactta-aaaaaa-attactgaggggacagccagagt-ggctcacgcctgtaatcctagcatttt
s panTro5.chr6              28982575 135 + 175400573 cttgcag-tgccactgca-ctccagcat-----gggtgacagggcgag----acctcaactcaaaaaataa--ataaaataaaCTTTACTTA-AAAAAA-ATTACTGAGGAGACAGCCAGAgt-ggctcacgcctgtaatcctagcatttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29226412 135 + 173848474 cttgcag-tgccactgca-ctccagcat-----gggtgacagggcgag----acctcaactcaaaaaataa--ataaaataaactttactta-aaaaaa-attactgaggagacagacagagt-ggctcacgcctgtaatcctagcatttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5015119 136 +   6154872 cttgcag-tgccactgca-ctccagcct-----gggtgacagggcgag----acctcaactcaaaaaataa--ataaaataaaCTTTACTTA-AAAAAA-ATTACTGAGGGGACagccagagtgggctcgcgcctgtaatcctagcatttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73950240 135 + 122973662 cttgcag-tgccactgca-ctccagcct-----gggtgacagggcgag----acctcaactcaaaaaataa--ataaaataaaCTTTACTCT-AAAAAA-ATTACGGAAGGGACAGCCAGAgt-ggctcacgcctgtaatcctagcatttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29162784 136 + 172585720 cttgcag-tgccaatgca-ttccagcct-----gggtgacagggcgag----acgtcaactcaaaaaataa--ataaaataaaCTTTACTTTAAAAAAA-ATTACTGAAGGAACAGCCAGAgt-gtctcatgcctgtaatcctagcatttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28852791 136 - 170955103 cttgcag-tgccaatgca-ttccagcct-----gggtgacagggcgag----acgtcaactcaaaaaataa--ataaaataaaCTTTACTTTAAAAAAA-ATTACTGAAGGAACAGCCAGAgt-gtctcacgcctgtaatcctagcatttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1824917 136 -   2996164 cttgcag-tgccaatgca-ttccagcct-----gggtgacagggcgag----acgtcaactcaaaaaataa--ataaaataaaCTTTACTTTAAAAAAA-ATTACTGAAGGAACAGCCAGAgt-gtctcacgcctgtaatcctagcatttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1720096 150 -   2157725 cttgcagttgccaatgcatttccagcctgggcggggtgacagggcaagaagcacgtcaactcaaaaaataaatataaaaTAAACTTTACTTTAAAAAAAGATTACTGAATGAACAGCCAGAGT-GTTCTacgcctgtaatcctagcatttt
i cerAty1.NW_012001495v1   I 20 I 23
s chlSab2.chr17             28168885 135 -  71996105 cttgcag-tgccactgca-ttccagcct-----gggtgacagggtgag----atgtcaactcaaaaaataa--ataaaataaaCTTTACTTT-AAAAAA-ATTACTGAAGGAACAGCCAGAgt-gtctcacgcctgtaatcctagcatttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1814721 136 +   2316924 cttgcag-tgccaatgca-ttccagcct-----gggtgacagggcgag----acgtcaactcaaaaaataa--ataaaataaaCTTTACTTTAAAAAAA-ATTACTGAAGGAACAGCCAGAgt-gtctcacgcctgtaatcctagcatttt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1703393 134 -   3067355 cttgcag-tgccactgca-ttccaacct-----gggtgaca-ggtgag----acgtcaactcaaaaaataa--ataaaataaaCTTTACTTT-AAAAAA-ATTAGTGAAGGAACAGCCAGAgt-gtctcacgactgtaatcctagcatttt
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903   2 -    285216 I
e cebCap1.NW_016108108v1      123724   2 -    373274 I
e calJac3.chr4             171303270   0 - 171630274 C

a score=72310.000000
s hg38.chr6_GL000254v2_alt      5669 18 +   4827813 cggagaccaagacaagag
s panTro5.chr6              28982710 18 + 175400573 cggagaccaagacaagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29226547 18 + 173848474 cggagaccaagacaagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5015255 18 +   6154872 gggagaccaagacaggag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             73950375 18 + 122973662 gggagaccaagacaggag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29162920 18 + 172585720 gggaaaccgaaacatgag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28852927 18 - 170955103 gggaaaccgaaacatgag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1825053 18 -   2996164 gggaaaccaaaacatgag
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28169020 18 -  71996105 gggaaaccaagacatgag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1814857 18 +   2316924 gggaaaccaaaacatgag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1703527 18 -   3067355 gggaaaccaagacaggag
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903  2 -    285216 I
e cebCap1.NW_016108108v1      123724  2 -    373274 I
e calJac3.chr4             171303270  0 - 171630274 C
e cerAty1.NW_012001495v1     1720246 23 -   2157725 I

a score=437217.000000
s hg38.chr6_GL000254v2_alt      5687 78 +   4827813 aactgag-tccaggagtttgTGCTCAAGTAATAACAATAC-TATCAGCACTCAATCTT--GGTATC--TTAAAACTTGA--CATTT
s panTro5.chr6              28982728 78 + 175400573 aactgag-tccaggagtttgTGCTCAAGTAATAAAAATAC-TATCAGCACTCAATCTT--GGTATC--TTGAAACTTGA--CATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29226565 78 + 173848474 aactgag-tccaggagtttgTGCTCAAGTAATAAAAATAC-TATCAGCACTCAATCTT--GGTATC--TTGAAACTTGA--CATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5015273 78 +   6154872 aactgag-tccaggagtttgTGCTCAAGTAATAACAATAC-TATCAGCACTCAATCTT--GGTATC--TTAAAACTTGA--CATTT
i gorGor5.CYUI01015250v1   C 0 I 1935
s nomLeu3.chr1a             73950393 78 + 122973662 aactgag-tccaggagtttgTGCTCAAGTAATAGCAATAC-TATCAGCACTCAATCTT--GGTATC--TTAAAACTTAA--CATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29162938 78 + 172585720 aactgag-tccaggagtttgtgctcaagtaataacaataa-tatcagcactcaatctt--ggtatc--TTAAAACTTGA--CATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28852945 78 - 170955103 aactgag-tccaggagtttgTGCTCAAGTAATAACAATAA-TATCAGCACTCAATCTT--GGTATC--TTAAAACTTGA--CATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1825071 78 -   2996164 aactgag-tccaggagtttgTGCTCAAGTAATAACAATAA-TATCAGCACTCAATCTT--GGTATC--TTAAAACTTGA--CATTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1720269 86 -   2157725 aactgagttccaggagtttgTGCTCAAGTAATAACAATAATTATCAGCACTCAATTCTTGGGTATCTTTTAAAACTTGGACCATTT
i cerAty1.NW_012001495v1   I 23 C 0
s chlSab2.chr17             28169038 78 -  71996105 aactgag-tccaggagtttgTGCTCAAGTAATAACAATAA-TATCAGCACTCAATCTT--GGTATC--TTAAAACTTGA--CATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1814875 78 +   2316924 aactgag-tccaggagtttgTGCTCAAGTAATAACAATAA-TATCAGCACTCAATCTT--GGTATC--TTAAAACTTGA--CATTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1703545 78 -   3067355 aactgag-tccaggagtttgtgctcgagtaataacaataa-tatcagcactcaatctt--ggtatc--TTAAAACTTGA--CATTT
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903  2 -    285216 I
e cebCap1.NW_016108108v1      123724  2 -    373274 I
e calJac3.chr4             171303270  0 - 171630274 C

a score=2239395.000000
s hg38.chr6_GL000254v2_alt      5765 404 +   4827813 AAATGAAATTTTAATTTGAG----TCAATTAAGAATAGAATATTCCACTTTTGCATAATTAACCATGAATTCACACAACAAATCAGAATTTAtttatttcattt---ttatta--ttattattttttgagatggtgtctcactctgccacccaggctggggtgccagtggcgtgatctcagttcactgcaacctccacctcccgggttcaagtgattctcgtgtctcagcctccctagcagctgggattacaggcgcacgccacca----aacccagctaattcttgtgtttttagtagagat-ggatttcgccatgttggccaggctggtcttgacctcctgacctgagatgatccgcccatctcggcctcccaaaatgctgggattacaggcatgagccaccatgcccggGCCAAA
s panTro5.chr6              28982806 403 + 175400573 AAATGAAATTTTAATTTGAG----TCAATTAAGAATAGAATATTCCACTTTTGCATAATTAACCATGAATTCACACAACAAATCAGAATTTAtttatttcattt---ttatta--ttattattttttgagatggtgtctcactctgccacccaggctggggtgc-agtggcgtgatctcagttcactgcaacctccacctcccgggttcaagtgattctcgtgtctcagcctcccgagcagctgggattacaggcgcacgccacca----aacccagctaattcttgtgtttttagtagagat-ggatttcgccatgttgggcaggctggtcttgacctcctgacctgagatgatccgcccatctcggcctcccaaaatgttgggattacaggcgtgagccaccatgcccggACCAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29226643 403 + 173848474 AAATGAAATTTTAATTTGAG----TCAATTAAGAATAGAATATTCCACTTTTGCATAATTAACCATGAATTCACACAACAAATCAGAATTTAtttatttcattt---ttatta--ttattattttttgagatggtgtctcactctgccacccaggctggggtgc-agtggcgtgatctcagttcactgcaacctccacctcccgggttcaagtgattctcgtgtctcagcctcccgagcagctgggattacaggcgcacgccacca----aacccagctaattcttgtgtttttagtagagat-ggatttcgccatgttgggcaggctggtcttgacctcctgacctgagatgatccgcccatctcggcctcccaaaatgctgggattacaggcgtgagccaccatgcccggACCAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5017286 403 +   6154872 AAATGAAATTTTAATTTCAG----TCAATTAAGAATAGAATATTCCACTTTTGCATAATTAACCATGAATTCACACAACAAATCAGAATTCAtttatttcattt---ttatta--ttattattttttgagatggtgtctcactctgccacccaggctggggtgc-agtgtcgtgatctcagttcactgcaacctccacctcccgggttcaagtgattctcgtgtctcagcctcccgagcagctgggattacagacgcacgccacca----cacccagctaattcttgtgtttttagtagagat-gggtttcgccacgttggccaggctggtcttgacctcctgacctgaggtgatccgcccatctcggcctcccaaaatgctgggattacaggcgtgagccaccatgcccggACCAAA
i gorGor5.CYUI01015250v1   I 1935 C 0
s nomLeu3.chr1a             73950471 407 + 122973662 AAATGAAATTTTAATTTGAG----TCAATTACGAATAGAATATTCCACTTTTGCATAATTAACCATGAATTCACGCAACAAATCGGAATTTATTTATTTCAtttttattatta--ttattattttttgagttggtgtctcacgctgccacccaggctggggtgc-agtggcatgatctcagctcactgcaacctccacctcccgggttcaagtgattcttgtgtctcagcctcccgagcagctgggattacaggcgcacgccacca----cacccagctaattcttgtgtttttagtagagatggggtttcgccatgttggccaggctggtcttgacctccttacctgaggtgatccgcccgtctcagcttcccaaaatgttgggattacaggcgtgagccaccatgcccggGCCAAA
i nomLeu3.chr1a            C 0 M 68749
s rheMac8.chr4              29163016 401 + 172585720 AAATGAAATTTTAATTTGAG----TCAATTAAGAATACAATATTCCACTTTTGCATAATTAACCATGAATTCACGCAGCAAATCGAAATTTAtttattttattt---ttatta--ttattattttttgagatggtgtctcactctgtcatcccggctgggatgc-agtggcatgatctcagctcactgcaacctctacctcccgggttgaagtgattctcgtgtctcagcctcccgagcagctgggattacaggcgcaggccacca----catccagctaattcttgtgtttctagtagagatggggtttcaccatgttgtccaggctggtcttgacct-ctga-ctcagttgat-cgccggtctcggcctcccaaaatgctgggattacagacgtgagccaccatgcccaggccGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28853023 404 - 170955103 AAATGAAATTTTAATTTGAG----TCAATTAAGAATACAATATTCCACTTTTGCATAATTAACCATGAATTCACGCAGCAAATCGAAATTTAtttattttattt---ttatta--ttattattttttgagatggtgtctcactctgtcatcccggctgggatgc-agtggcatgatctcagctcactgcaaccttcacctcccgggttgaagtgattctcgtgtctcagcctcccgagcagctgggattacaggcgcaggccacca----catccagctaattcttgtgtttctagtagagatggggtttcaccatgttgtccaggctggtcttgacctcctgacctcaggtgatccgccggtctcggcctcccaaaatgctgggattacagacgtgagccaccatgcccggGCCGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1825149 404 -   2996164 AAATGAAATTTTAATTTGAG----TCAATTAAGAATACAATATTCCACTTTTGCATAATTAACCATGAATTCACGCAGCAAATCGAAATTTAtttattttattt---ttatta--ttattattttttgagatggtgtctcactctgtcatcccggctgggatgc-agtggcatgatctcagctcactgcaacctccacctcccgggttgaagtgattctcgtgtctcagcctcccgagcagctgggattacaggcgcaggccacca----catccagctaattcttgtgtttctagtagagatggggtttcgccatgttgtccaggctggtcttgacctcctgacctcaggtgatccgccggtctcggcctccaaaaatgctgggattacagacgtgagccaccatgcccggACCGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1720355 408 -   2157725 AAATGAAATTTTAATTTGGAGGTTCAAATTAAGAATACAATATTCCACTTTTGCATAATTTACCATGAATTCACGCAGCAAATCGAAATTTATTTAttttatta---ttattattttattattttttgagatggtgtctca--ctgtcatcccggctgggatgc-agtggcatgatctcagctcactgcaacctccacctcccgggttgaagtgattctcgtgtctcagcctcccgagcagctgggattacaggcgcacgccacca----cattcagctaattcttgtgtttctagtagagatggggtttcgccatgttgtccaggctggtcttgacctcctgacctcaggtgatccgccggtcttggcctcccaaaatgctgggattacagacgtgagccaccatgcccggGCCAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28169116 408 -  71996105 AAATGAAATTTTAATTCGAG----TCAATTAAGAATACAATATTCCACTTTTGCATAATTAACCATGAATTCACGCAGCAAATCGAAATTTAtttattttattt---ttatta--ttattattttttgagatgatgtctcactctgtcatccaggctgggatgc-agtggcatgatctcagctcactgcaacctccacctcctgggttgaaatgattctcgcgtctcagcctcccgagcagctgggattacaggcgcacgccaccacacccacccagctaattcttgtgtttctagtagagatggggtttcgccatgttgtccgggctggtcttgacctcctgacctcaggtgatctgccggtctaggcctcccaaaatgctgggattacagacgtgagccaccatgcccggGCCAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1814953 404 +   2316924 AAATGAAATTTTAATTTGAG----TCAATTAAGAATACAATATTCCACTTTTGCATAATTAACCATGAATTCACGCAGCAAATCGAAATTTAtttattttatta---ttatta--ttattattttttgagatggtgtctcactctgtcatcccggctgggatgc-agtggcatgatctcagctcactgcaacctccacctcccgggttgaagtgattctcgtgtctcagcctcccgagcagctgggattacaggcgcaggccacca----catccagctaattcttgtgtttctagtagagatggggtttcgccatgttgtccaggctggtcttgacctcctgacctcaggtgatccgccggtctcggcctcccaaaatgctgggattacagacgtgagccaccatgcccggGCGGAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1703623 404 -   3067355 AAGTGAAATTTTAATTTGAG----TCAATTAAGAATACAATATTCCACTTTCGCATAATTAACCATGAATTCACGCAGCAAATCAAAATTTAtttattttattt---ttatta--ttattattttttgagatggtgtctcactctgtcatccaggctggaatgc-agtggcatcatctcagctcactgcaacctccaccttctgggttgaagtgattctcgtgtctcagcctccccagcagctgggattacaggcgcacgccacca----cacccagctaattcttgtgtttctagtagagatggagtttcgccatgttgtccagtctggtcctgacctcctgacctcaggtgatccgccggtctcggcctcccaaaatgctgggattacagatgtaagccaccatgcccggGCCAAA
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903   2 -    285216 I
e cebCap1.NW_016108108v1      123724   2 -    373274 I
e calJac3.chr4             171303270   0 - 171630274 C

a score=159618.000000
s hg38.chr6_GL000254v2_alt      6169 35 +   4827813 TTGGAATTTAGCACCCACATTTATCTTAACTCAGT
s panTro5.chr6              28983209 35 + 175400573 TTGGAATTTAGCACCCACATTTATCTTAACTCAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29227046 35 + 173848474 TTGGAATTTAGCACCCACATTTATCTTAACTCAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5017689 35 +   6154872 TTGGAATTTAGCACCCACATTTATCTTAACTCAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29163417 33 + 172585720 TTGGGATTT-GCACCCACATTT-TCTTAACTCAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28853427 35 - 170955103 TTGGGATTTAGCACCCACATTTATCTTAACTCAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1825553 35 -   2996164 TTGGGATTTAGCACCCACATTTATCTTAACTCAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1720763 35 -   2157725 TTGGGATTTAGCACCCACATTTATCTTAACTCAGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28169524 35 -  71996105 CTGGGATTTAGCACCCACATGTATCTTAACTCAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1815357 35 +   2316924 TTGGGATTTAGCACCCACATTTATCTTAACTCGGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1704027 35 -   3067355 TTGGGATTTAGTACCCACAGTTATCTTAACTCAGT
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903  2 -    285216 I
e cebCap1.NW_016108108v1      123724  2 -    373274 I
e calJac3.chr4             171303270  0 - 171630274 C
e nomLeu3.chr1a             73950878 68749 + 122973662 M

a score=1115304.000000
s hg38.chr6_GL000254v2_alt      6204 219 +   4827813 AGTTCCTAAGTAAAAG---------AGATTTGTAAggccaggcgcggtggctcacgcctgtaatcccagcactttgggaagccgaggcgggcggatcacg----ca-ggagatcaagaacatcctagctaacatggtgaaaccccgtctctactaaaattacaaaaaaattagccgggcttggtggcatgcgcctgtagtcccagctactcaggaggctgaggcaggagaatc
s panTro5.chr6              28983244 219 + 175400573 AGTTCCTAAGTAAAAG---------AGATTTGTAAGTccaggcgcgatggctcacgcctgtaatcccagcactttgggaagccgaggcgggcggatcacg----ca-ggagatcaagaacatcctagctaacatggtgaaaccccgtctctactaaaattacaaaaaaattagccgggcttggtggcatgcccctgtagtcccagctactcaggaggctgaggcaggagaatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29227081 219 + 173848474 AGTTCCTAAGTAAAAG---------AGATTTGTAAGTccaggcgcggtggctcacgcctgtaatcccagcactttgggaagccgaggcgggcggatcacg----ca-ggagatcaagaacatcctagctaacatggtgaaaccccgtctctactaaaattacaaaaaaattagccgggcttggtggcatgcccctgtagtcccagctactcaggaggctgaggcaggagaatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5017724 219 +   6154872 AGTTCCTAAGTAAAAG---------AGATTTGTAAggccgggcgcggtggctcacgcctgtaatcccagcacttttggaagccaaggcgggcggatcacg----ca-ggagatcaagaacatcctagctaacatggtgaaaccccgtctctactaaaattacaaaaaaattagccgggcttggtggcatgcgcctgtagtcccagctactcaggaggctgaggcaggagaatc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74019661 219 + 122973662 AATTCCTAAGTAAAAG---------AGATTTCTAAggccgggtgcggtggctcacgcctgtaatcccagcactttgggaagccgaggcgggcggatcacg----ca-ggagattgagaacatcctggctaacatggtgaaaccctgtctctactaaaattacaaaaaaattagccaggcgtggtggcatgcgcctgtagtcccagctactcaggaggctgaggcaggagaatc
i nomLeu3.chr1a            M 68749 C 0
s rheMac8.chr4              29163450 213 + 172585720 AGTTCCTAAGTAAAA----------AGAATTGTAAGG--gggggcggtggctcatgcctgtaatcccaccactttgggaagcggaggcgggcggatcacgaggtcagggatagggagaacattctggctaacacggtgaaaccccatctccatt--------taaaaaattaggcaggcttggtggcatgcgcctgtagtcccagctactcaggagggtgaggcaggagaatc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28853462 220 - 170955103 AGTTCCTAAGTAAAAGAAAATTTGTAAATTTGTAAggccgggagcggtggctcatgcctgtaatcccaccactttgggaaacggaggcagg----tcacgaggtca-ggagatagagaacattctggctaacacggtgaaaccccatctccatt--------taaaaaattaggcaggcgtggtggcatgcgcctgtagtcccagctactcaggagggtgaggcaggagaatc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1825588 215 -   2996164 AGTTCCTAAGTAAAAG---------AAATTTGTAAggccgggagcggtggctcatgcctgtaatcccaccactttgggaagcggaggcgggcggatcacgaggtca-ggagatagagaacattctggctaacacagtgaaaccccatctccatt--------taaaaaattaggcaggcgtggtggcatgcgcctgtagtcccagctactcaggagggtgaggcaggagaatc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1720798 215 -   2157725 AGTTCCTAAGTAAAAC---------AAATTTGTAAggccgggagcggtggctcatgcctgtaatcccaccactttgggaagccgaggcgggcggatcacgaggtca-ggagatagagaacatcctggctaacacggtgaaaccccgtctccatt--------aaaaaaattaggcaggcgtggtggcatgcgcctgtagtcccagctactcaggagggtgaggcaggagaatc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28169559 215 -  71996105 AGTTCCTAAGTAAAAG---------AAATTTGTAAggctgggcgtggtggctcacgcctgtaatcccagcactttgggaagccgaggcgggcggatcacgaggtca-ggagatagagaacatcctggctaacacggtgaaaccctgtctctact--------aaaaaaattaggcaggcgtggtggcatgcgcctgtagtcccagctactcaggagggtgaggcaggagaatc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1815392 214 +   2316924 AGTTCCTAAGTAAAAT---------AAATTTGTAAggccgggagcagtggctcatgcctgtaatcccaccactttgggaagccgaggcgggcggatcacgaggtca-ggagat-gagaacatcctggctaacacggtgaaaccccatctccatt--------taaaaaattaggcaggcgtggtggcatgcacctgtagtcccagctactcaggagggtgaggcaggagaatC
i manLeu1.NW_012104165v1   C 0 T 5984
s colAng1.NW_012115566v1     1704062 215 -   3067355 GGTTTCTAAGTAAAAG---------AAATTTGTGAggccgggcgcggtggctcacgcctgtaatcccagccctttgggaagccgaggcgggcggatcacgaggtca-ggagatagagaacatcctggctaacacggtgaaaccccgtctctact--------aaaaaaattaggcaggcgtggtggcatgcacctgtagtcccagctactcaggagggtgaggcaggagaatc
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903   2 -    285216 I
e cebCap1.NW_016108108v1      123724   2 -    373274 I
e calJac3.chr4             171303270   0 - 171630274 C

a score=404219.000000
s hg38.chr6_GL000254v2_alt      6423 100 +   4827813 gcttgaatccgggaggcggagtttgcagtgagccgagatcgcagttcacaccaccgcactccagcctgagcgatagagcgacactccgtctc-aaa------------------aaat---t
s panTro5.chr6              28983463 100 + 175400573 gcttgcatccggtaggcggaggttgcagtgagccgagatcgcagttcacaccactgcactccagcctgagcgatagagcgacactccgtctc-aaa------------------aaat---t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29227300 100 + 173848474 gcttgcatccgggaggcggaggttgcagtgagccgagatcgcagttcacaccactgcactccagcctgagcgatagagcgacactccgtctc-aaa------------------aaat---t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5017943  92 +   6154872 gcttgaatccgggaggcggaggttgcagtgagccgagatcgcagttcacaccattgcactccagcctgagtgatagagcgacactccgtctc------------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74019880 103 + 122973662 gcttgaatccgggaggcggaggttgcagtgagccgagatcgcagttcacaccactgcactccagcctgagcaatagagcgagactctgtctc-aaa------------------aaataaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29163663  99 + 172585720 gcttgaatccgggaggcggaggttgcagtgagccaagatcgcagttctcaccactgcactccagcctgggcgatagagcgagactccgtctc-aaa------------------aaat----
i rheMac8.chr4             C 0 I 16
s macFas5.chr4              28853682 100 - 170955103 gcttgaatccgggaggcggaggttgcagtgagccaagatcgcagttctcaccactgcactccagcctgggcgatagagcgagactccgtctcaaaa------------------aaaa----
i macFas5.chr4             C 0 I 17
s macNem1.NW_012011356v1     1825803  92 -   2996164 gcttgaatccgggaggcggaggttgcagtgagccaagatcgcagttctcaccactgcactccagcctgggcgatagagcgagactccgtctc------------------------------
i macNem1.NW_012011356v1   C 0 I 16
s cerAty1.NW_012001495v1     1721013 118 -   2157725 gcttgaatccgggaggcggaggttgcagtgagccaagatcgcagttctcaccactgcactccagcctgggcgatagagcgagactccgtctcaaaaaaaaaaTATATATAaaataaat----
i cerAty1.NW_012001495v1   C 0 I 16
s chlSab2.chr17             28169774  97 -  71996105 gcttgaatccgggaggcggaggttgcagtgagccaagatcgcagttctagccactgcactccagcctgggcgatagagccagactccgtc---aaa------------------aaaa----
i chlSab2.chr17            C 0 I 1
s colAng1.NW_012115566v1     1704277  98 -   3067355 acttgaatccggcaggcggaggttgcagtgagccaagatcgcagttctcactactgcactccagcctgggctatagagcgagactctgtctcaaaa------------------aa------
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903   2 -    285216 I
e cebCap1.NW_016108108v1      123724   2 -    373274 I
e calJac3.chr4             171303270   0 - 171630274 C
e manLeu1.NW_012104165v1     1815606 5984 +   2316924 T

a score=4647275.000000
s hg38.chr6_GL000254v2_alt      6523 850 +   4827813 aaataaataaataaataaaTAA---------------------GTATTTGTTTGTATGTCAATCTAGGAACAAT----TCACAGCCGTCTCTACTTTGAACCACCCAAAAGGCTGATTTATGTGAATTTAATTTCACTTGACAATTAATTAAACTCCTCTGCATATCCTGCCtttt-g-ttttgtttcttgttttgtttgtttACTAAGAGACTGCAATC-TGCTTGTAGTTCACCCCTGCTCAAGCAAGACATACATTCAGTTTTGTTTTTTCAGTTGTGAGTAAATACCTCTTTTCCTCAGCAATATGTGGGTCCTGTGAG-TTTCTTAGAGGGCCCTGGCTCATTTTGCTGATAGGGTTGCCAAACTCTTAGTGTGATAATAGTGCATTCTTTGACCACTTTGTTTCTAAATTCTGGCCATCCTTCAAAACTATGAGCTCGAGCGAGTGTCCCAACCACATGAGTTCCAGGTTGTTGTAATTGAGCCTTTATCAGTACATTTTGATGAAAGCTTTTCCTATTAGGATTTGGATTTGTGACCTTCAGATTTTTGTGGAAATTTATTAACAATGTTTGACTCTCGAGTTTTGAGAGCCCAAAGAAAGTTTTTGATAGAAACTTTCTTTTCTTGGTGATATACTCTCCTTGATTGTGACTtcttcc---tcttcttcctctttttgttcttttctttctccttcaccttctcctcctcgttctcctcc-tTGTTTCTGCTTTTGTTAACCAAGGTCTGGAAAGATTTTACTTTTCTGTTTACTGTTTTATTTAAGCTTGTGTTGAGAGTAATAAGGAAATCGTAGAAATCAGAGAGAATGGCATAGGCCCTGTAAGTCACCATCATCTTTAATGCGGATGTTA
s panTro5.chr6              28983563 863 + 175400573 aaataaataaataaataaataaataaataa----------aAAGTATTTGTTTGTATGTCAATCTAGGAACAAT----TCACAGCCGTCTCTACTTTGAACCACCCAAAAGGCTGATTTATGTGAATTTAATTTCACTTGACAATTAATTAAACTCCTCTGCATATCCtgtctttttg-ttttgtttcttgttttgtttgtttACTAAGAGACTGCAATC-TGCTTGTAGTTCACCCCTGCTCAAGCAAGACATACATTCAGTTTTGTTTTTTCAGTTGTGAGTAAATACCTCTTTTCCTCAGCAATATGTGGGTCCTGTGAGATTTCTTAGAGGGCCCTGGCTCATTTTGCTGATAGGGTTGCCAAACTCTTACTGTGATAATAGTGCATTCTTTGACCACTTTGTTTCTAAATTCTGGCCATCCTTCAAAACTATGAGCTCGAGTGAGTGTCCCAACCACATGAGTTCCAGGTTGTTGTAATTGAGACTTTATCAGTACATTTTGATGAAAGCTTTTCCTATTAGGATTTGGATTTGTGACCTTCAGATTTTTGTGGAAATTTATTAACAATGTTTGACTCTCGAGTTTTGAGAGCCCAAAGAAAGTTTTTGATAGAAACTTTCTTTTCTTGGTGATATACTCTCCTTGATTGTGActtcttcc---tcttcttcctctttttgttcttttctttctcctgcaccttctcctcctcgttctcctcc-ttgtttctgcttTTGTTAACCAAGGTCTGGAAAGATTTTACTTTTCTGTTTACTGTTTTATTTAACCTTGTGTTGAGAGTAATAAGGAAATCGTAGAAATCAGAGAGAATGGCATAGGCCCTGTAAGTCACCATCATCTTTAATGCGGATGTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29227400 873 + 173848474 aaataaataaataaataaataaataaataaataaataaataaaGTATTTGTTTGTATGTCAATCTAGGAACAAT----TCACAGCCGTCTCTACTTTGAACCACCCAAAAGGCTGATTTATGTGAATTTAATTTCACTTGACAATTAATTAAACTCCTCTGCATATCCtgtctttttg-ttttgtttcttgttttgtttgtttACTAAGAGACTGCAATC-TGCTTGTAGTTCACCCCTGCTCAAGCAAGACATACATTCAGTTTTGTTTTTTCAGTTGTGAGTAAATACCTCTTTTCCTCAGCAATATGTGGGTCCTGTGAGATTTCTTAGAGGGCCCTGGCTCATTTTGCTGATAGGGTTGCCAAACTCTTACTGTGATAATAGTGCATTCTTTGACCACTTTGTTTCTAAATTCTGGCCATCCTTCAAAACTATGAGCTCGAGTGAGTGTCCCAACCACATGAGTTCCAGGTTGTTGTAATTGAGCCTTTATCAGTACATTTTGATGAAAGCTTTTCCTATTAGGATTTGGGTTTGTGACCTTCAGATTTTTGTGGAAATTTATTAACAATGTTTGACTCTCGAGTTTTGAGAGCCCAAAGAAAGTTTTTGATAGAAACTTTCTTTTCTTGGTGATATACTCTCCTTGATTGTGActtcttcc---tcttcttcctctttttgttcttttctttctcctgcaccttctcctcctcgttctcctcc-ttgtttctgcttTTGTTAACCAAGGTCTGGAAAGATTTTACTTTTCTGTTTACTGTTTTATTTAAGCTTGTGTTGAGAGTAATAAGGAAATCGTAGAAATCAGAGAGAATGGCATAGGCCCTGTAAGTCACCATCATCTTTAATGCGGATGTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5018035 839 +   6154872 -----aataaataaataaaTAA---------------------GTATTTGCTTGTATGTCAATCTAGGAACAAT----TCACAGCCGTCTCTACTTTGAACCACCCAAAAGGCTGATTTATGTGAATTTAATTTCACTTGACAATTA---AAACTCCTATGCATATC----CTttttg-ttttgtttcttgttttgtttgtttACTAAGAGACTGCAATC-TGCTTGTAGTTCACCCCTGCTCAAGCAAGACATACATTCAGTATTGTTTTTTCAGTTGTGAGTAAATACCTCTTTTCCTCAGCAATATGTGGGTCCTGTGAGATTTCTTAGACGGCCCTGGCTCATTGTGCTGATAGGGTTGCCAAACTCTTACTGTGATAATAGTGCATTCTTTGAGCACTTTGTTTTTAAATTCTGGCCATCTTTCAAAACTATGAGCTCGAGTGAGTGTCCCAACCACATGAGTTCCAGGTTGTTGTAATTGAGCCTTTATCAGTACATTTTGATGAAAGCTTTTCCTATTAGGATTTGGATTTGTGACCTTCAGATTTTGGTGGAAATTTATTAACAATGTTTGACTCTCGAGTTTTGAGAGCCCAAAGAAAGTTTTTGATAGAAACTTTCTTTTCTTGGTGATATACTCTCCTTGATTGTGActtcttcg---tcttcttcctctttttgttcttttctttctccttcaccttctcctcctcgttctcctcc-ttgtttctgcttTTGTTAACCAAGGTCTGGAAAGATTTTACTTTTCTGTTTACTGTTTTATTTAAG-TTGTGCTGAGAGTAATAAGGAAATCGTAGAAATCAGAGAGAATGGCATAGGCCCTGTAAGTCACCATCACCTTTAATGCGGATGTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74019983 872 + 122973662 aaataaataaataaataaataaataaataaataaataaataa-aAATTTGTTTGTATGTCAATCTAGGAACAAT----TCACACCCGTCTCTTCTTTGAACCACCCAAAAGGCTGATTTATGTGACTTTAATTTCACTTGAGAATTAATTAAACTCCTATGCATATCCtgtctttttg-ttttgtttcttgttttgtttgtttACTAAGAGACTGAATTC-TGCTTGTAGTTCACCCCTGCTCAAGCAAGACATACATTCAGTTTTGTTTTTTCAGTTGTGAGTAAATACCTCTTTTCCTCAGCAATATGTGGGTCCTGTGAGATTTCTTAGAGGGCCCTGGCTCATTTTGCTGATAGGGTTGCCAAACTCTTACTGTGATAATAGTGCATTCTTTGAGCACTTTGTTTTTAAATTCTGGCCATCCTTCAAAACTATGAGCTTGAGTGAGTGTCCCAACCACATGCGTTCCAGGTTGTTGTAATTGAGCCTTTATCAGTACATTTTGATGAAAGTTTTTCCTACTAGGATTTGGACTTGTGACCTTCAGATTTTCGTGGAAATTTATTAACAATGTTTGACTCTCGAGTTTTGAGAGTCCAAAGAAAGTTTTTGATAGAAACTTCCTTTTCTTGGCAATATACTCTCCTTGATTGTGACTTTttcc---tcttcttcctctttttcttcttttctttctccttcaccttctcctcctcgttctcctcc-tTGTTTCTGCTTTTATTAACCAAGGTCTGGAACGATTTTATTTTTCTGTTTACTGTTTTATTTAAGCTGGTGTTGAGAGTAATAAGGAAATCGTAGAAATCAGAGAGAATGGCACAGGCCCTGTAAGTCACCATCATCTTTAATGCGGATGTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29163778 849 + 172585720 aaataaataaataaataaataa---------------------aGATTTGTTTGTATGCCAATCTAGGAACAATTAATTCACACCCATCTCTACTTTGAACCACCCAAAAGACTGATTTACGTGAATTTAATTTCACTTCAG----AATTAAACTCCTTTGCACGTCCTGTCTTTTTGTTTTTGTTTCTTGTTTTGTTTG----CCAAGAGACTGCATTTGCGCTTGTAGTTCACCCCTGCTGAAGCAAGACATACATTCAGTTTTGTTTTTTCAGATGTGAGTAAATGCCTCTTTTCCTCAACAATATA-GGGTTCTGTGAGATTTCTTAGGGGGCCCTGGTTCATTTTGCTGATAGGGTTGCCAGACTCTTACCGTGATAATAGTGCATTCTTTGAGCACTTTGTTTTTAAATTCTGGCCACCCTTCAAAACTATGAGGTTGAGTGAGTGTCCCAACCACATGAGTTCCAGGTTATTGTAATTGAGCCTTTATCACTACATTTTGATGAAAGGTTTTCCTACTAGGATTTGGATTTGTGACCTTCAGATTTTTGTGGAAATTTATTAACAATGTTTGACTCTCGAATTTTGAGAGCCCAAGGAAAGTTTTTGATAGAAACTTCCTTTTCTTGGTGATATACTCTCCTTGATTGTGACTtctttctcttcttcttcctctttttcttcttctctttctccttcacctt---ctcctcgttctcctcc-ttgtttctgctttTATTAACCAAGGTCTGGAACGACTTTATTTTTCTGTTTACCGTTTTATTTAAGCTTGTGTTGAGAGTAATAAGGAAATGGTAGAAATCAGAGAGAATGGCATAGGCCCTGTAAGTCACCATCATCTTTAATGTGGATGTTA
i rheMac8.chr4             I 16 C 0
s macFas5.chr4              28853799 853 - 170955103 aaataaataaataaataaataa---------------------aGATTTGTTTGTATGCCAATCTAGGAACAATTAATTCACACCCATCTCTACTTTGAACCACCCAAAAGACTGATTTACGTGAATTTAATTTCACTTCAGAATTAATTAAACTCCTTTGCACGTCCTGTCTTTTTGTTTTTGTTTCTTGTTTTGTTTG----CCAAGAGACTGCATTTGCGCTTGTAGTTCACCCCTGCTCAAGCAAGACATACATTCAGTTTTGTTTTTTCAGATGTGAGTAAATGCCTCTTTTCCTCAGCAATATA-GGGTTCTGTGAGATTTCTTAGGGGGCCCTGGTTCATTTTGCTGATAGGGTTGCCAGACTCTTACCGTGATAATAGTGCATTCTTTGAGCACTTTGTTTTTAAATTCTGGCCACCCTTCAAAACTATGAGGTTGAGTGAGTGTCCCAACCACATGAGTTCCAGGTTATTGTAATTGAGCCTTTATCACTACATTTTGATGAAAGGTTTTCCTACTAGGATTTGGATTTGTGACCTTCAGATTTTTGTGGAAATTTATTAACAATGTTTGACTCTCGAATTTTGAGAGCCCAAGGAAAGTTTTTGATAGAAACTTCCTTTTCTTGGTGATATACTCTCCTTGATTGTGActtcttcctcttcttcttcctctttttcttcttctctttctccttcacctt---ctcctcgttctcctcc-ttgtttctgcttTTATTAACCAAGGTCTGGAACGACTTTATTTTTCTGTTTACCGTTTTATTTAAGCTTGTGTTGAGAGTAATAAGGAAATGGTAGAAATCAGAGAGAATGGCATAGGCCCTGTAAGTCACCATCATCTTTAATGTGGATGTTA
i macFas5.chr4             I 17 C 0
s macNem1.NW_012011356v1     1825911 849 -   2996164 aaataaataaataaataaataa---------------------aGATTTGTTTGTATGCCAATCTAGGAACAATTAATTCACACCCATCTCTACTTTGAACCACCCAAAAGACTGATTTACGTGAATTTAATTTCACTTCAGAATTAATTAAACTCCTTTGCACGTC----CTTTTTGTTTTTGTTTCTTGTTTTGTTTG----CCAAGAGACTGCATTTGCGCTTGTAGTTCACCCCTGCTCAAGCAAGACATACATTCAGTTTTGTTTTTTCAGATGTGAGTAAATGCCTCTTTTCCTCAGCAATATA-GGGTTCTGTGAGATTTCTTAGGGGGCCCTGGTTCATTTTGCTGATAGGGTTGCCAGACTCTTACCGTGATAATAGTGCATTCTTTGAGCACTTTGTTTTTAAATTCTGGCCACCCTTCAAAACTATGAGGTTGAGTGAGTGTCCCAACCACATGAGTTCCAGGTTATTGTAATTGAGCCCTTATCACTACATTTTGATGAAAGGTTTTCCTACTAGGATTTGGATTTGTGACCTTCAGATTTTTGTGGAAATTTATTAACAATGTTTGACTCTCGAATTTTGAGAGCCCAAGGAAAGTTTTTGATAGAAACTTCCTTTTCTTGGTGATATACTCTCCTTGATTGTGActtcttcctcttcttcttcctctttttcttcttctctttctccttcacctt---ctcctcgttctcctcc-ttgtttctgcttTTATTAACCAAGGTCTGGAACGACTTTATTTTTCTGTTTACCGTTTTATTTAAGCTTGTGTTGAGAGTAATAAGGAAATGGTAGAAATCAGAGAGAATGGCATAGGCCCTGTAAGTCACCATCATCTTTAATGTGGATGTTA
i macNem1.NW_012011356v1   I 16 C 0
s cerAty1.NW_012001495v1     1721147 854 -   2157725 aaataaataaataaataaataa---------------------aGATTTGTTTGTAGGCCAATCTAGGAACAATTAATTCACACCCATCTCTACTTTGAACCACCCCAAAGGCTGATTTATGTGAATTTAATTTCACTTCAGAATTAATTAAACTCCTTTGCACGTCCTGTCTTTTTGTTTTTGTTTCTTGTTTTGTTTG----CCAAGAGACTGCATTTGCGCTTGTAGTTCACCGCTGCTCAAGCAAGACATACATTCAGTTTTGTTTTTTCAGATGTGAGTAAATGCCTCTTTTCCTCAGCAATATA-GGGTCCTGTGAGGTTTCTTAGGGGGCCCTGGCTCATTTTGCTGATAGGGTTGCCAGACTCTTACCGTGAAAATAGTGCATTCTTTGAGCACTTTGTTTTTAAATTCTGGCCACCCTTCAAAACTATGAGGTTGAGTGAGTGTCCCAACCACATGAGTTCCAGGTTATTGTAATTGAGCCTTTATCACTACATTTTGATGAAAGGTTTTCCTACTAGGATTTGGATTTGTGACCTTCAGATTTTTGTGGAAATTTATTAACAATGTTTGACTCTCGAATTTTGAGAGCCCAAGGAAAGTTTTTGATAAAAACTTCCTTTTCTTGGTGATATACTCTCCTTGATTGTGActtcttcctcttcttcttcctctttttcttcttctctttctccttcacctt---ctcctcgttctcctcctttgtttctgcttTTATTAACCAAGGTCTGGAATGACTTTATTTTTCTGTTTACCGTTTTATTTAAGCTTGTGTTGAGAGTAATAAGGAAATGGTAGAAACCAGAGAGAATGGCATAGGCCCTGTAAGTCACCATCATCTTTAATGTGGATGTTA
i cerAty1.NW_012001495v1   I 16 C 0
s chlSab2.chr17             28169872 830 -  71996105 -------------------aaa---------------------aaGTTTGTTTGTATGTCAATCTAGGAACAATTAACTCACACCCATCTCTACTTTGAACCACCCAAAAGGCTGATTTATGTGAATTTAATTTCACTTCAG----AATTAAACTCCTTTGCATGTCCTGTCTTTTTGCTTTTGTTTCTTGTTTTGTTTG----CCAAGACACTGCATTTCTGCTTGTAGTTCACCCCTGCTCAAGCAAGACATACATTCAGTTTTGTTTATTCAGATGTGAGTAAATGCCTCTTTTCCTCAGCAATATA-GGGTCCTGTGAGATTTCTTAGGGGGCCCTGGTTCATTTTGCTGATAGGGTTGCCAGACTCTTACCATGATAATAGTGCTTTCTTTGAGCACTTTGTTTTTAAATTCTGGCCACCCTTCAAAACTATGAGGTTGAGTGAGTGTCCCAATCACATGAGTTCCAGGTTATTGTAATTGAGCCTTTATCACTACATTTTGATGAAAGTTTTTCCTACTAGGATATGGATTTGTGACCTTCAGATTTTAGTGGAAATCTATTAACAATGTTTGACTCTCGAATTTTGAGAGCCCAAAGAAAGTTTTTGATAGAAACTTCCTTTTCTTGGTGATATACTCTCCTTGATTGTGActtcttcctcttcttcttcctctttttcttcttctctttctccttcacctt---ctcctcgtcctcctcc-ttgtttctgcttTTATTAACCAAGGTCTGGAACGACTTTATTTTTCTGTTTACCATTTTATTTAAGCTTGTGTTGAGAGTAATAAGGAAATGGTAGAAATCAGAGAGAATGGCATAGGCCCTGTAAGTCACCATCATCTTTAATGTGGATGTTA
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012104165v1     1809622 854 +   2316924 aaataaataaataaataaataa---------------------aGATTTGTTTGTATGCCAATCTAGGAACAATTAATTCACACCCATCTCTACTTTGAACCACCCAAAAGACTGATTTATGTGAATTTAATTTCACTTCAGAATTAATTAAACTCCTTTGCACGTCCTGTCTTTTTGTTTTTGTTTCTTGTTTTGTTTG----CCAAGAGACTGCATTTGCGCTTGTAGTTCACCCCTGCTCAAGCAAGACATATATTCAGTTTTGTTTTTTCAGATGTGAGTAAATGCCTCTTTTCCTCAGCAATATA-GGGTCCTGTGAGGTTTCTTAGGGGGCCCTGGCTCATTTTGCTGATAGGGTTGCCAGACTCTTACCGTGATAATAGTGCATTCTTTGAGCACTTTGTTTTTAAATTCTGGCCACCCTTCAAAACTATGAGGTTGAGTGAGTGTCCCAACCACATGAGTTCCAGGTTATTGTAATTGAGCCTTTATCACTACATTTTGATGAAAGGTTTTCCTACTAGGATTTGGATTTGTGATCTTCAGATTTTTGTGGAAATTTATTAACAATGTTTGACTCTCGAATTTTGAGAGCCCAAGGAAAGTTTTTGATAGAAACTTCCTTTTCTTGGTGATATACTCTCCTTGATTGTGActtcttcctcttcttcttcctctttttcttcttctctttctccttcacctt---ctcctcgttctcctcCTTTGTTTCTGCTTTTATTAACCAAGGTCTGGAATGACTTTATTTTTCTGTTTACCGTTTTATTTAAGCTTGTGTTGAGAGTAATAAGGAAATGGTAGAAACCAGAGAGAATGGCATAGGCCCTGTAAGTCACCATCATCTTTAATGTGGATGTTA
i manLeu1.NW_012104165v1   T 5984 C 0
s colAng1.NW_012115566v1     1704375 847 -   3067355 ----aaaaaaaaaaaaaaaaaa---------------------aGATTTGTTTGTATGTCAATCTAGAAACAATTAATTTACACCCATCTCTACTTTGAACCACCCAAAAGGCTGATTTATGTGAATTTAATTTCACTTCAGAATTAATTAAACTCCTTTGCATGTCCTGTCTTTTTGTTTTTGTTTCTTGTTTTGTTTG----CCAAGAGACTGCATTTGCGCTTGTAGTTCACCCCTGCTCAAGCAAGACATACATT--GTTTTGTTTTTTCAGATGTGAGTAAATGCCTCTTTTCCTCAGCAATATA-GGGTCCTGTGAGATTTCTTAGGGGGCCCTGGCTCATTTTGTTGATGGGGTTGCCAGACTCTTACTGTGACAATAGTGCATTCTTTGAGCACTTTGTTTTTAAATGCTGGCCACCCTTCAAAACCATGATGTTGAGTGAGTGTCCCAACCACATGAGTTCCAGGTTATTGTAATTGAGCCTTTATCACTACATTTTGATGAAAGGTTTTCCTACTAGGATTTGGATTTGTGACCTTCAGATTTTTGTGGAAATTTATTAACAATGTTTGGCTCTCGAATTTTGAGAGCCCAAAGAAAGTTTTTGATAGAAATTTCCTTTTCTTGGTGGTATACTCTCCTTGATTGCGActtcttcctcttcttcttcctctttttcttcttctctttctccttcacctt---ctcctggttctcctcc-ttGTTTCTGCTTTTATTAACCAAGGTCTGGAACGACTTTATTTTTCTGTTTACCGTTTTATTTAAGCTTGTGTTGAGAGTAATAAGGAAAAGGTAGAAATCAGAGAGAATGGCATAGGCCCTGTAAGTCACCATCATCTTTAATGTGGATGTTA
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903   2 -    285216 I
e cebCap1.NW_016108108v1      123724   2 -    373274 I
e calJac3.chr4             171303270   0 - 171630274 C

a score=19554.000000
s hg38.chr6_GL000254v2_alt      7373 3 +   4827813 ACC
s panTro5.chr6              28984426 3 + 175400573 ACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29228273 3 + 173848474 ACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5018874 3 +   6154872 ACC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74020855 3 + 122973662 ACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29164627 3 + 172585720 ACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28854652 3 - 170955103 ACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1826760 3 -   2996164 ACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1722001 3 -   2157725 ACC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28170702 3 -  71996105 ACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1810476 3 +   2316924 ACC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1705222 3 -   3067355 ACC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171303270 3 - 171630274 ATT
i calJac3.chr4             C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70903 2 -    285216 I
e cebCap1.NW_016108108v1      123724 2 -    373274 I

a score=402926.000000
s hg38.chr6_GL000254v2_alt      7376 49 +   4827813 AGTACAAGAACCCCGTTAGAGTTGCATTTGCTTTCTAGGGCAAGATCTT
s panTro5.chr6              28984429 49 + 175400573 AGTACAAGAACCCCGTTAGAGTTGCATTTGCTTTCTAGGGCAAGATCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29228276 49 + 173848474 AGTACAAGAACCCCGTTAGAGTTGCATTTGCTTTCTAGGGCAAGATCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5018877 49 +   6154872 AGTACAAGAACCCCGTTTGAGTCGCATTTGCTTTCTAGGGCAAGATGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74020858 49 + 122973662 AGTATAAGAACCCCTTTAGAGTTGCATTTGCTTTCTAGGGCAAGATCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29164630 49 + 172585720 CGTACAAGTACCCCGTTAGAGTTGCATTTGCTTTCTAGGGCAAAATCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28854655 49 - 170955103 CGTACAAGTACCCCGTTAGAGTTGCATTTGCTTTCTAGGGCAAAATCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1826763 49 -   2996164 CGTACAAGTACCCCGTTAGAGTTGCATTTGCTTTCTAGGGCAAAATCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1722004 49 -   2157725 CGTACAAGTACCCCCTTAGAGTTGCATTTGCTTTCTAGGGCAAAATCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28170705 49 -  71996105 TGTGTAAGTACCCCGTTAGAGTTGCATTTACTTTCTAAGGCAAAATCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1810479 49 +   2316924 CGTACAAGTACCCCCTTAGAGTTGCATTTGCTTTCTAGGGCAAAATCTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1705225 49 -   3067355 ATTATAAGTACCCCGTTAGAGTTGCATTTGCTTTCTAGGGCAAAATCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171303273 49 - 171630274 AGTACAAGAATCCTGTTAGAAATGCATTTGCTTTCTAGGACAAAATCTT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      123726 49 -    373274 AGTACAAGAATCCTGTTAGACATGCATTTGCTTTCTAGGGCAAAATCTT
i cebCap1.NW_016108108v1   I 2 I 286
s aotNan1.NW_018494050v1       70905 49 -    285216 AGTACAAGAATCCTGTTAGAAATGCATTTGCTTTCTAGGGCAAAATCTT
i aotNan1.NW_018494050v1   I 2 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I

a score=178558.000000
s hg38.chr6_GL000254v2_alt      7425 21 +   4827813 TGCTCTAAG-TTTTTTTAAACA
s panTro5.chr6              28984478 21 + 175400573 TGCTCTAAG-TTTTTTTAAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29228325 21 + 173848474 TGCTCTAAG-TTTTTTTAAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5018926 21 +   6154872 TGCTCTAAG-TTTTTTTAAACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74020907 21 + 122973662 TGCTCTAAG-TTTTTTTAAACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29164679 21 + 172585720 TGCTGTAAG-TTTTTTTGAACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28854704 21 - 170955103 TGCTGTAAG-TTTTTTTGAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1826812 21 -   2996164 TGCTGTAAG-TTTTTTTGAACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1722053 21 -   2157725 TGCTGTAAG-TTTTTTTGAACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28170754 21 -  71996105 TGCTCTAAG-TTTTTTTAAACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1810528 21 +   2316924 TGCTGTAAG-TTTTTTTGAACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1705274 21 -   3067355 TGCTCTAAG-CTTTTTTAAACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171303322 22 - 171630274 TGCTCTAAGTTTTTTTTAAACA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      124061 21 -    373274 TGCTCTAAG-TTTTTTTAAACA
i cebCap1.NW_016108108v1   I 286 C 0
s aotNan1.NW_018494050v1       70954 21 -    285216 TGCTCTAAG-TTTTTTTAAACA
i aotNan1.NW_018494050v1   C 0 I 496
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I

a score=304427.000000
s hg38.chr6_GL000254v2_alt      7446 55 +   4827813 CATGGCTGTCTATCtttaaaa----aaacaaatcatttttattttatagagtataattg
s panTro5.chr6              28984499 55 + 175400573 CATGGCTGTCTATCTTTAAAA----AAACAAATCATTTTTATTTCATAGAGTATAattg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29228346 53 + 173848474 CATGGCTGTCTATCTTTAAAA----AA--AAATCATTTTTATTTCATAGAGTATAattg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5018947 54 +   6154872 CATGGCTGTCTAtctttaaaa----aaa-aaatcatttttattttatagagtataattg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74020928 51 + 122973662 CATGACTGTGTATCttttaaa--------aaatcatttttattttatagagtataactg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29164700 52 + 172585720 CATGACTGTGTATAtttttaa----a---aagtcatttttattttatagagtataattg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28854725 52 - 170955103 CATGACTGTGTATAtttttaa----a---aagttatttttattttatagagtataattg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1826833 52 -   2996164 CATGACTGTGTATAtttttaa----a---aagtcatttttattttatagagtataattg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1722074 52 -   2157725 CATGACTGTGTATAtttttaa----a---aaatcatttttattttatagagtataattg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28170775 52 -  71996105 CATGACTGTGTATAtttttaa----a---aaatcatttttactttatagagtataatag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1810549 52 +   2316924 CATGACTGTGTATAtttttaa----a---aaatcatttttattttatggagtataattg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1705295 52 -   3067355 CATGACTGTGTATATttttta----a---aaatcatttttattttataaagtataattg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171303344 48 - 171630274 ----GCTATGtattttttttt----t---aatttatttttattttataGAGTAGAATTG
i calJac3.chr4             C 0 I 435
s cebCap1.NW_016108108v1      124082 52 -    373274 ----CCTGTGTATCTTTTTTTAAAAC---AAATTATTTTTATTTTATAGAGTATAATTG
i cebCap1.NW_016108108v1   C 0 I 455
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70975 496 -    285216 I

a score=1465774.000000
s hg38.chr6_GL000254v2_alt      7501 266 +   4827813 tcgaacagtcttagctttacagaaaaatttagaagatattagagttcccatataccctgcacccaatacccctactattatgatagtccttactattaagatggtacttttCTgccgcgcgcgatgactcacgcctgtaatcccagcactttgggacgtcaaggcgggcagatcacctgaggtcaggagttcgagaccagcctggccaatatggtgaaaccccttctctaccaacaatacaaaaatcagccaggcatggtggcggg
s panTro5.chr6              28984554 266 + 175400573 tcgaacagtcttagctttacagaaaaatttagaagatattagagttcccatataccctgcacccaatacccctactattatgatagtccttactattaagatggtacttttCTgccgggcgcgatgactcacgcctgtaatcccagcactttgggacgtcaaggcgggcggatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccttctctaccaacaatacaaaaatcagccaggcatgatggcggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29228399 266 + 173848474 tcgaacagtcttagctttacagaaaaatttagaagatattagagttcccatataccctgcacccaatacccctactattatgatagtccttactattaagatggtacttttCTgccgggcgcgatgactcacgcctgtaatcccagcactttgggacgtcaaggcgggcggatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccttctctaccaacaatacaaaaatcagccaggcatgatggcggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5019001 266 +   6154872 tcgaacaatcttagctgtacagaaaaatttagaagatattagagttcccatataccctgcacccaatacccctactattatgatagtccttactattaagatggtacttttCTgccgggcgcgatgactcacgcctgtaatcacagcactttgggacgtcaaggcgggcggatcaattgaggtcaggagctcgagaccagcctggccaacatggtgaaaccccttctctaccaacaatacaaaaatcagccaggcatggtggcggg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74020979 266 + 122973662 tcgaacagtcttagatttacagaaaaatttagaagatattagagttcccatataccctgcacccaatactcctactattatgatagtccttactattaagatggtacttttCTgccgggcgcgatggctcacgcctgtaatcccagcactttgggacgtcaaggcgggcggatcacttgaggtcaggagttcgagaccagcctggccaacacggtgaaaccccttctctaccaacaatacaaaaatcagccaggcatggtggcagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29164752 266 + 172585720 tcaaacagtcttagatttacagaaaaaattagaagatattagagttcccatataccctgcacccaatactcttactattatgatagtacttactattaagatggtaGTTTTCTgcctggcgcagtggctcacgactgtaatcccagcactttgggaagtcaagacgggcggatcacttgagatcaggagttcgagaccaccctggccaatatggtgaaactccctctctactaaaaatacaaaaattaggcgggtgtggtggcagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28854777 266 - 170955103 tcaaacagtcttagatttacagaaaaaattagaagatattagagttcccatataccctgcacccaatactcttactattatgatagtacttactattaagatggtaGTTTTCTgcctggcgcagtggctcacgactgtaatcccagcactttgggaagtcaagacgggcggatcacttgagatcaggagttcgagaccaccctggccaatatggtgaaaccccctctctactaaaaatacaaaaattaggcgggtgtggtggcagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1826885 264 -   2996164 tcaa--agtcttagatttacagaaaaaattagaagatattagagttcccatataccctgcacccaatactcttactattatgatagtacttactattaagatggtaGTTTTCTgcctggcgcagtggctcacgactgtaatcccagcactttgggaagtcaagacgggcggatcacttgagatcaggagttcgagaccagcctggccaatatggtgaaaccccctctctactaaaaatacaaaaattaggcgggtgtggtggcagg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1722126 266 -   2157725 tcaaacagtcttagatttacagaaaaaattagaaggtattagagttcccgtataccctgcacccaatactcttactattatgatagtccttactattaagatggtagttttctgccgggcgcggtggctcacgactgtaatcccagcactttgggaagtcaagacgggcggatcacttgagatcaggagttcgagaccagcctggccaatatggtgaaaccccctctctactaaaaatacaaaaattaggcgggtgtggtggcagg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28170827 262 -  71996105 t----cagtcttagattttcagaaaaatttagaagatattagagttcccatataccctgcacccaatactcttactattatgatagtccttactattaagatggtacttttctgccggtggcggtggctcacgactgtaatcccagcactttgggaagtcaaggcgggcggatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccctctctactaaaaatacaaaaattaggcgggtgtggtggcagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1810601 266 +   2316924 tcaaacagtcttagatttacaggaaaaattagaagatattagagttcgcgtataccctgcacccaatactcttactattatgatagtccttactattaagatggtaGTTTTCTgccgggcgcggtggctcacgactgtaatcccagcactttgggaagtcaagacgggcggatcacttgagatcaggagttcgagaccagcctggccaatatggtgaaaccccctctctactaaaaatacaaaaattaggcgggtgtggtggcagg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1705347 266 -   3067355 tcaaacagtcttagatttacagaaaaatttagaagacgttagagttcccatataccctgcacccaatactcttactattgtgatagtccttactattaagatggtacttttCTgccggaggaggtggctcacgactgtaaccccagcactttggaaagtcaaggcgggcggatcacttgagatcaggagttcgagaccagcctggccaacgtggtgaaaccccctctctactaaaactacaaaaattaggcaggtgtggtggcagg
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70975 496 -    285216 I
e cebCap1.NW_016108108v1      124134 455 -    373274 I
e calJac3.chr4             171303392 435 - 171630274 I

a score=241470.000000
s hg38.chr6_GL000254v2_alt      7767 148 +   4827813 cacctgtaatcctagctactcgggaggctgaggcaggagaatagcttgaaccctggaggtggagattgcaatgagcagagattgtgccactgcactccagccagggcgacaaagtgagactcaa------------------------aaataaataaataaataaataaaa
s panTro5.chr6              28984820 148 + 175400573 cacctgtaatcctagctactcgggaggctgaggcaggagaatcgcttgaaccctggaggtggagattgcaatgagcagagattgtgccactgcactccagccagggcgacaaagtgagactcaa------------------------aaataaataaataaataaataaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29228665 148 + 173848474 cacctgtaatcctagctactcgggaggctgaggcaggagaatcgcttgaaccctggaggtggagattgcaatgagcagagattgtgccactgcactccagccagggcgacaaagtgagactcaa------------------------aaataaataaataaataaataaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5019267 172 +   6154872 cacctgtaatcctagctactcgggaggctgaggcaggagaatcgcttgaaccctggaggtggagattgcaatgagcagagattgtgccactgcactccagccagggcgacaaagtgagactcAAaaataaataaataaataaataaataaataaataaataaataaataaaA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74021245 168 + 122973662 cacctgtaatcctagctactcgggaggctgaggcaggagaatcgcttgaaccctggaggtggagattgcaatgagcagagattgtgccactgcactccagccagggcgacagggtgagactcAA----aaataaataaataaataaataaataaataaataaataaataaaA
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28171089 156 -  71996105 -------aatcctagctactcgggagcctgaggcaggagaatctcttgaacccaggaggcggagattgcagtgagcagaaattgtgccactgcactccagcccaggtgacaaagtgagaAATta---------aataaataaataaataaataaataaataaataaataaaA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1705613 127 -   3067355 -------aatcctagctactcggaaggctgaggcaggagaatcgcttgaacccaggagacggagattgcagtgagcagaaattgtgtcactgcactccagcccaggtgacaaagtgag--------------------------------------aAATAAATAAATAAAA
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70975 496 -    285216 I
e cebCap1.NW_016108108v1      124134 455 -    373274 I
e calJac3.chr4             171303392 435 - 171630274 I
e manLeu1.NW_012104165v1     1810867   0 +   2316924 C
e cerAty1.NW_012001495v1     1722392   0 -   2157725 C
e macNem1.NW_012011356v1     1827149   0 -   2996164 C
e macFas5.chr4              28855043   0 - 170955103 C
e rheMac8.chr4              29165018   0 + 172585720 C

a score=24164.000000
s hg38.chr6_GL000254v2_alt      7915 10 +   4827813 Tgccgggcac
s panTro5.chr6              28984968 10 + 175400573 Tgccgggcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29228813 10 + 173848474 Tgccgggcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5019439 10 +   6154872 Tgccgggcac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74021413 10 + 122973662 Tgccaggcac
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28171245 10 -  71996105 Tgccgggcac
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1705740 10 -   3067355 Tgccgggcac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171303827 10 - 171630274 Tgctgggcaa
i calJac3.chr4             I 435 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       70975 496 -    285216 I
e cebCap1.NW_016108108v1      124134 455 -    373274 I
e manLeu1.NW_012104165v1     1810867  0 +   2316924 C
e cerAty1.NW_012001495v1     1722392  0 -   2157725 C
e macNem1.NW_012011356v1     1827149  0 -   2996164 C
e macFas5.chr4              28855043  0 - 170955103 C
e rheMac8.chr4              29165018  0 + 172585720 C

a score=32125.000000
s hg38.chr6_GL000254v2_alt      7925 10 +   4827813 ggtggttcac
s panTro5.chr6              28984978 10 + 175400573 ggtggttcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29228823 10 + 173848474 ggtggttcac
i panPan2.chr6             C 0 I 21
s gorGor5.CYUI01015250v1     5019449 10 +   6154872 ggtggttcac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74021423 10 + 122973662 ggtggttcac
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28171255 10 -  71996105 agtggttcac
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1705750  9 -   3067355 aggggttca-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171303837 10 - 171630274 ggtggctcac
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      124589 10 -    373274 ggtggctcac
i cebCap1.NW_016108108v1   I 455 C 0
s aotNan1.NW_018494050v1       71471 10 -    285216 ggtggctcac
i aotNan1.NW_018494050v1   I 496 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e manLeu1.NW_012104165v1     1810867  0 +   2316924 C
e cerAty1.NW_012001495v1     1722392  0 -   2157725 C
e macNem1.NW_012011356v1     1827149  0 -   2996164 C
e macFas5.chr4              28855043  0 - 170955103 C
e rheMac8.chr4              29165018  0 + 172585720 C

a score=391287.000000
s hg38.chr6_GL000254v2_alt      7935 143 +   4827813 gcctgtaatcccagcactttgggaggccgaggcgggcggatcacctgaggtcaggagtttgagaccaacctggccaacatgatgaaacctcgtctctact-aaaaaaacacaaaaattagccgggcgtgatggcgggcgcctgt
s panTro5.chr6              28984988 143 + 175400573 gcctgtaatcccagcactttgggaggccgaggcgggcggatcacctgaggtcaggagtttgagaccaacctggccaacatgatgaaacctcgtctctact-aaaaaaatacaaaaattagccgggtgtgatggcgggcgcctgt
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5019459 143 +   6154872 gcctgtaatcccagcactttgggaggccgaggcgggcggatcacctgaggtcaggagtttcagaccaacctggccaacataatgaaacctcgtctctact-aaaaaaacacaaaaattagccgggtgtgacggcgggcgcctgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74021433 144 + 122973662 gcctgtaatcccagcactttgggaggccgagacgggcggatcacctgaggtctggagtttgagaccaacctggccaacatgatgaaaccctgtctctactaaaaaaaatacaaaaattagccaggcatgatggcgggcgcctgt
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28171265 143 -  71996105 gcctgtaatcccagtactttgggaggccgaggcgggcagatcatctgagatcaggagttcgagaccagcctggccaacatgatgaaaccccgtctctact-aaaaaaatacaaaaattaaccgggtgtgatggcgggctcctgt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1705759 143 -   3067355 gcctgtaatcccagcactttgggaggccgaggcgggcggatcatctgaggtcaggagttcgagagcagcctggcgaacatgatgaaacaccatctctact-aaaaaaatacaaaaattagccgggtgtgatggcgggcgcctgt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171303847 139 - 171630274 gcctgtaatcccagcactttgggaggctgaggccggcagatcacttgagatcaggagttcgagactaccctggccaacatggtgaaagcctg--tctagt---aaaagtacaaaaattagccaggtgtggtggcctgcacctgt
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      124599 141 -    373274 gcctgtaatcccagcactttgggaggctgaggccggcagatcacttgagatcaggagtttgagactaccctggccaacatggtgaaatcctgtctctact---aaaagtacaaaaattagccaggcgtggtggcctgcacctgt
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       71481 139 -    285216 gcctgtaatcccaacactttgggaggctgaggccagcagatcacttgagatcaggagttcgagactaccctggccaacatggtgaaatcctg--tctact---aaaagtacaaaaattagccaggcgtggtggcctgcacctgt
i aotNan1.NW_018494050v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e manLeu1.NW_012104165v1     1810867   0 +   2316924 C
e cerAty1.NW_012001495v1     1722392   0 -   2157725 C
e macNem1.NW_012011356v1     1827149   0 -   2996164 C
e macFas5.chr4              28855043   0 - 170955103 C
e rheMac8.chr4              29165018   0 + 172585720 C
e panPan2.chr6              29228833  21 + 173848474 I

a score=98740.000000
s hg38.chr6_GL000254v2_alt      8078 13 +   4827813 aatcccagctact
s panTro5.chr6              28985131 13 + 175400573 attcccagctacc
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5019602 13 +   6154872 aatcccagctact
i gorGor5.CYUI01015250v1   C 0 I 1
s nomLeu3.chr1a             74021577 13 + 122973662 aatcccagctact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29165018 13 + 172585720 aatcctagctact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28855043 13 - 170955103 aatcctagctact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1827149 13 -   2996164 aatcctagctact
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1722392 13 -   2157725 aatcctagctact
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28171408 13 -  71996105 aatcccagctact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1810867 13 +   2316924 aatcctagctact
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1705902 13 -   3067355 aatcccagctact
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171303986 13 - 171630274 aatcccagctact
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      124740 13 -    373274 aatcctagctatt
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       71620 13 -    285216 aatcccagctacc
i aotNan1.NW_018494050v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e panPan2.chr6              29228833 21 + 173848474 I

a score=862705.000000
s hg38.chr6_GL000254v2_alt      8091 124 +   4827813 cgggaggctgaggcaggagaatcgctttacccggagaggcggagttttcagtgagccgagatcgtgccactgcactcctgcctgggtgacagagcgagactccgtctcaaaaaaaaaaaaaaaa
s panTro5.chr6              28985144 124 + 175400573 cgggaggctgaggcaggagaatcgcttgacccggagaggcggagttttcagtgagccgagatcgtgccactgcactcctgcctgggtgacagagcgagactccgtctcaaaaaaaaaaaagaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29228854 124 + 173848474 cgggaggctgaggcaggagaatcgcttgacccggagaggcggagttttcagtgagccgagatcgtgccactgcactcctgcctgggtgacagagcgagactccgtctcaaaaaaaaaaaaagaa
i panPan2.chr6             I 21 C 0
s gorGor5.CYUI01015250v1     5019616 124 +   6154872 ggggagggtgaggcaggagaatctcttgacccggagaggcggagttttcagtgagccgagatcgtgcgactgcactcctgcctgggtgacagagcgagactccgtctcaaaaaaaaagaaaaag
i gorGor5.CYUI01015250v1   I 1 C 0
s nomLeu3.chr1a             74021590 124 + 122973662 cgggaggctgaggcaggagaatcgcttgacccccagaggcggagttttcagtgagcggagatcgtgccactgcactcctgcctgggtgacagagcgagacttggtctcaaaaaaaaaaaaagaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29165031 112 + 172585720 ccggaggctgaggcaggagaatcgcttgaccccgagaggcagagttttcagtgagccgagatcag--cactgcactcctgcctgggtgacagagcgacactccgtctc-aaaaaa---------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28855056 112 - 170955103 ccggaggctgaggcaggagaatcgcttgaccccgagaggcagagttttcagtgagccgagatcag--cactgcactcctgcctgggtgacagagcgacactccgtctc-aaaaaa---------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1827162 112 -   2996164 ccggaggctgaggcaggagaatcgcttgaccccgagaggcagagttttcagtgagccgagatcag--cactgcactcctgcctgggtgacagagcgacactccgtctc-aaaaaa---------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1722405 113 -   2157725 ccggaggctgaggcaggagaatcgcttgaccccgagaggcggagttttcagtgagtcgagatcag--cactgcactcctgcctgggtgaccgagcgagactccgtctcaaaaaaa---------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28171421 122 -  71996105 caggaggctgaggcaggagaatcgcttgaccccgagaggcggagttttcagtgagccgagatcag--gactgcactcctgcatgggtgacagagcgagactccgtctcaaaaaaaaaaaaaTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1810880 113 +   2316924 ccggaggctgaggcaggagaatcgcttgaccccgagaggcggagttttcagtgagtcgagatcag--cactgcactcctgcctgggtgaccgagcgagactccgtctcaaaaaaa---------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1705915 112 -   3067355 tgggaggctgaggcaggagaatctcttgaccccgagatgcggagttttcagtgagccgagatcag--gactgcactcctgcctgggtgacagagcgagactccgtctc-aaaaaa---------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171303999 123 - 171630274 cgggaggctgagacaggagaatcgcttgcacccaggaagcggaggttgcagtgagccgagactgtgccactgcactccagcctggacaacagagtgagattccatctcaaaacagaaaaaaaa-
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      124753 124 -    373274 cgggaggctgagacaagagaatcgcttgcacccgggaagcagaggttgcagagagccaagattgtgccactgcactccagcctggacaacagagtgagattccatcacaaaaaagaaaaaaaaa
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       71633 124 -    285216 cgggaggctgagacaggagaatcgcttgcacccgggaagcggaggttgcagtgagccaagattgtgtcactgcactccagcctggacaacagagtgagatttcatcttaagaaagaaaaaaaaa
i aotNan1.NW_018494050v1   C 0 I 8
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I

a score=700.000000
s hg38.chr6_GL000254v2_alt      8215 1 +   4827813 a
s panTro5.chr6              28985268 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29228978 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5019740 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74021714 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28171543 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016108108v1      124877 1 -    373274 a
i cebCap1.NW_016108108v1   C 0 I 8
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       71757 8 -    285216 I
e calJac3.chr4             171304122 0 - 171630274 C
e colAng1.NW_012115566v1     1706027 0 -   3067355 C
e manLeu1.NW_012104165v1     1810993 0 +   2316924 C
e cerAty1.NW_012001495v1     1722518 0 -   2157725 C
e macNem1.NW_012011356v1     1827274 0 -   2996164 C
e macFas5.chr4              28855168 0 - 170955103 C
e rheMac8.chr4              29165143 0 + 172585720 C

a score=23297.000000
s hg38.chr6_GL000254v2_alt      8216 39 +   4827813 aaa-------------------aaaaaaaaaaaaaaaaagaaaaGGGTGATTTTGTGT
s panTro5.chr6              28985269 22 + 175400573 aaa------------------------------------gaaaaGGGTGATTTTGTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29228979 23 + 173848474 gaa-----------------------------------agaaaaGGGTGATTTTGTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5019741 58 +   6154872 aaaaagaaaagaaaagaaaagaaaaaagaaaaaaaaaaagaaaagGGTGATTTTGTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74021715 26 + 122973662 aag--------------------------------aaaagaaaaGGGTGATTTTGTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29165143 18 + 172585720 ----------------------------------------aaaaTGTACTTTTTGTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28855168 18 - 170955103 ----------------------------------------aaaaTGTACTTTTTGTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1827274 18 -   2996164 ----------------------------------------aaaaTGTACTTTTTGTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1722518 18 -   2157725 ----------------------------------------aaaatgtactttttgtgt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28171544 22 -  71996105 ATT------------------------------------TAAAAAGTACTTTTTGTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1810993 18 +   2316924 ----------------------------------------aaaaTGTACTTTTTGTGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1706027 18 -   3067355 ----------------------------------------aaaaGGCACTTTTTGTGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171304122  8 - 171630274 ---------------------------------------------GTTACTTT-----
i calJac3.chr4             C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       71757  8 -    285216 I
e cebCap1.NW_016108108v1      124878  8 -    373274 I

a score=686715.000000
s hg38.chr6_GL000254v2_alt      8255 82 +   4827813 TGTGTTTGTTAAATTCATGAAACAAGTAGGACAAGACCATAAATT-GAAAAACCAAGCCCATTCCAAATTACGAATGCCTCCG
s panTro5.chr6              28985291 82 + 175400573 TGTGTTTGTTAAATTCATGAAACAAGTAGGACAAGACCATAAATT-GAAAAACCAAGCCCATTCCAAATTACGAATGCCTCCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29229002 82 + 173848474 TGCGTTTGTTAAATTCATGAAACAAGTAGGACAAGACCATAAATT-GAAAAACCAAGCCCATTCCAAATTACGAATGCCTCCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5019799 82 +   6154872 TGTGTTTGTTAAATTCATGAAACAAGTAGGACAAGACCATGAATT-GAAAAACCAAGCCCATTCCGAATTACGAATGCCTCCG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74021741 82 + 122973662 TGTGTTTGTTAAATTCATGAAACTAGTAGGACAACACCATAAATT-GAAAAACCAAGCCCATTCCAAATTACGAATGCCTCCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29165161 83 + 172585720 TGTGTTTGTTAAATTCATGAAACAAGCAGGACAAGACCATAAATTGGAAAAACCAAGCCAATTCCAAATTACGAACGCCTCCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28855186 83 - 170955103 TGTGTTTGTTAAATTCATGAAACAAGCAGGACAAGACCATAAATTGGAAAAACCAAGCCAATTCCAAATTACGAACGCCTCCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1827292 83 -   2996164 TGTGTTTGTTAAATTCATGAAACAAGCAGGACAAGACCATAAATTGGAAAAACCAAGCCAATTCCAAATTACGAACGCCTCCG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1722536 83 -   2157725 tgtgtttgttaaattcatgaaacaaGCAGGACAAGACCATAAATTGGAAAAACTAAGCCAATTCCAAATTACAAACGCCTCCG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28171566 81 -  71996105 --TGTTTGTTAAATTGATGAAACAAGCAGGACAAGACCATCAATTGGAAAATCCAAGCCAATTCCAATTTACGAATGTCTCCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1811011 83 +   2316924 TGTGTTTGTTAAATTCATGAAACAAGCAGGACAAGACCATAAATTGGAAAAACCAAGCCAATTCCAAATTACGAACGCCTCCG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1706045 81 -   3067355 --TGTTTGTTAAATTCATGAAACAAGCAGGACAAGACCATAAATTGGAAAAACCAAGCCAATTCCAAATTACGAATGCCTCCG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171304130 83 - 171630274 TGTGTTTGTTAAATTCATGAAACAAGTGGGACAAGACCATAAACTGGAAAAACTAAACCCATCCCTAATTACTTATGCCTCTG
i calJac3.chr4             C 0 I 10
s cebCap1.NW_016108108v1      124886 83 -    373274 TGTGTTTGTTAAATTCATGAAACAAGTAGGACAAGACCATAAACTGGAAAAACTAAACCCATTCCGAATTACTTATGCCTCTG
i cebCap1.NW_016108108v1   I 8 C 0
s aotNan1.NW_018494050v1       71765 82 -    285216 TGTGTTTGTTAAATTCATGAAACAAGTAGGACAAGACCATAAACTGGAAAAACTAAACCCATTCCAAATTACTTAT-CCTCTG
i aotNan1.NW_018494050v1   I 8 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I

a score=87680.000000
s hg38.chr6_GL000254v2_alt      8337 15 +   4827813 GTAGTACCTA-TGCCA
s panTro5.chr6              28985373 15 + 175400573 GTAGTACCTA-TGCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29229084 15 + 173848474 GTAGTACCTA-TGCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5019881 15 +   6154872 GTAGTACCTA-TGCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74021823 15 + 122973662 GTAGTACCTA-TGCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29165244 16 + 172585720 GTAGTACCTACCGTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28855269 16 - 170955103 GTAGTACCTACCGCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1827375 16 -   2996164 GTAGTACCTACCGCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1722619 14 -   2157725 GTAGTACCTA-CGCC-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28171647 15 -  71996105 GTAGTACCTA-CGCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1811094 14 +   2316924 GTAGTACCTA-CGCC-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1706126 15 -   3067355 GTAGTACCTA-CGCCA
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      124969 15 -    373274 GTAGCACCTA-CGCCA
i cebCap1.NW_016108108v1   C 0 I 207
s aotNan1.NW_018494050v1       71847 14 -    285216 GTAGTA-CTA-TGCCA
i aotNan1.NW_018494050v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e calJac3.chr4             171304213 10 - 171630274 I

a score=465830.000000
s hg38.chr6_GL000254v2_alt      8352 111 +   4827813 GGGACAAAGTGCACTTTAATAGTCAATACACAGGTTGCT---TACCGGGTTC-TTGT-TTTTTTTGTCAATAGTCTTCTTTCA-----TTTCAAGTTCCCAAAGTCTTGGGAACAAGCCGG
s panTro5.chr6              28985388 111 + 175400573 GGGACAAAGTGCACTTTAATAGTCAATACACAGGTTGCT---TACCGGGTTC-TTGC-TTTTTTTGTCAATAGTCTTCTTTCA-----TTTCAAGTTCCCAAAGTCTTGGGAACAAGCCGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29229099 111 + 173848474 GGGACAAAGTGCACTTTAATAGTCAATACACAGGTTGCT---TACCGGGTTC-TTGC-TTTTTTTGTCAATAGTCTTCTTTCA-----TTTCAAGTTCCCAAAGTCTTGGGAACAAGCCGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5019896 111 +   6154872 GGGACAAAGTGCACTTTAATAGTCAATACACAGGTTGCT---TACCGGGTTC-TTGC-TTTTTTTGTCAATAGTCTTCGTTCC-----TTTCAAGTTCCCAAAGTCTTGGGAACAAGCCGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74021838 101 + 122973662 GAGGCAAAGTGCACTTTAATAGTCAATACACAGGTTGCT---TACCGAGTTC-TTGCTTTTTTTTGTCAATATTCTTCGCTCA-----TTTCAAGTTCCCAAAGTCT-----------CTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29165260  94 + 172585720 CAGACAAAGTGCACTTTAATAATCAGTACACACCTTGCT---TACTGGGTTC-TTGC---TTTTCGTCAATATCCTTCCCTCA-----TTTCAAGTTTCCAAAGGC---------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28855285  94 - 170955103 CAGACAAAGTGCACTTTAATAATCAGTACACACCTTGCT---TACTGGGTTC-TTGC---TTTTCGTCAATATCCTTCCCTCA-----TTTCAAGTTTCCAAAGGC---------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1827391  94 -   2996164 CAGACAAAGTGCACTTTAATAATCAGTACACACCTTGCT---TACTGGGTTC-TTGC---TTTTCGTCAATATCCTTCCCTCA-----TTTCAAGTTTCCAAAGGC---------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1722633  91 -   2157725 ---ACAAAGTGCACTTTAAGAATCAGTAAACACCTTGCT---TACTGGGTTC-TTGC---TTTTCGTCAATATCCTTCGCTCA-----TTTCAAGTTTCCAAAGGC---------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28171662  95 -  71996105 AGGACAAAGTACACTTTAATAATCAGTGCACACTTTGCT---TACTGGGTTC-TTGC---TTTTCATCAATATTCTTCGCTCA-----TTTCAAGTTTCTAAAGGCT--------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1811108  91 +   2316924 ---ACAAAGTGCACTTTAAGAATCAGTACACACCTTGCT---TACTGGGTTCATTAC---TTTTCGTCAATATCCTTCGCTCA------TTCAAGTTTTCAAAGGC---------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1706141 102 -   3067355 AGGACAAAGTGCACTTTAATAATCTGTACACACCTTGCTTACTACTGGGTTC-TTGC---TTTTCGTCAATATTCTTCGCTCATTTCATTTCAAGTTTCCAAAGCC---------------
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018494050v1       71861  95 -    285216 GGGAC-AATTGCACCTTAATAGTCAGTGCACAGGTGGGT---TACTGAGTCC-TTGC---TCTTTCTTAATATTCTTCGTTCA-----TTTCAAGTTTCCAAAGGCTT-------------
i aotNan1.NW_018494050v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e cebCap1.NW_016108108v1      124984 207 -    373274 I
e calJac3.chr4             171304213  10 - 171630274 I

a score=1275818.000000
s hg38.chr6_GL000254v2_alt      8463 200 +   4827813 TTTTTTTTTTTTT-------------AACTGGCTTGCAGAAAGCTCAAGGAGATGTGCAGAAAGTAAAGATATTTCCTGACAATAGTAAGAACAcgaccacgaagggactcgaaccctcaatc-ttct-gatccggaatcagacgccttatccattaggccacgcggccGCACGCGGGTGCTAATTTGCACACATCAAGACTGAAGTGTAGTGAG
s panTro5.chr6              28985499 213 + 175400573 ttttttttttttttttttttttttttAACTGGCTTGCAGAAAGCTCAAGGAGATGTGCAGAAAGTAAAGATATTTCCTGACAATAGTAAGAACAcgaccacgaagggactcgaaccctcaatc-ttct-gatccggaatcagacgccttatccattaggccacgcggccGCACGCGGGTACTGATTTGCACACATCAAGACTGAAGTGTAGTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29229210 204 + 173848474 TTTTGTTTTTTTT---------TTTAACTTGGCTTGCAGAAAGCTCAAGGAGATGTGCAGAAAGTAAAGATATTTCCTGACAATAGTAAGAACAcgaccacgaagggactcgaaccctcaatc-ttct-gatccggaatcagacgccttatccattaggccacgcggccGCACGCGGGTACTGATTTGCACACATCAAGACTGAAGTGTAGTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5020007 199 +   6154872 TTTTTTTTTTTA--------------AACTGGCTTGCAGAAAGCTCAAGCAGATGTGCAGAAAGTAAAGATATTTCCTGACAATAGTAAGGACAcgaccacgaagggactcgaaccctcaatc-ttct-gatccggaatcagacgccttatccattaggccacacggccGCACGCGGGTTGTGATTTGCACACATCAAGACTGAAGTGTAGTGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74021939 202 + 122973662 TTTTTTTTTTTTT----------TTAAACCGGCTTGCAAAAAGCTCAAGGAGATGTGCAGAAAGTAAAGATATTTCCTGACAATAGTAAGGACAcgacca-gaagggactcgaaccctcaatc-ttct-gatctgaactcagacaccttatctattaggccacgcggccGTACGCGGGTGCTGGTTTGCACACATCAAGACTGAAGTGTAGTGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29165354 198 + 172585720 -----TTTTTTTA----------AAAAACCGTCTTGCAGAAAGCTCAAGGAAACATGCAGAAACTAAAGCTATTTCCTGACAATAGTAAGGACAcgaccacgaagggactcgaaccctcaatc-ttct-gatccggaatcagacgccttatccattaggccacgcggccGCACGCAGGTGTTGGTTCTCAAACATGAAGACCGAAGTGCAGTGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28855379 198 - 170955103 -----TTTTTTTA----------AAAAACCGTCTTGCAGAAAGCTCAAGGAAACATGCAGAAACTAAAGCTATTTCCTGACAATAGTAAGGACAcgaccacgaagggactcgaaccctcaatc-ttct-gatccggaatcagacgccttatccattaggccacgcggccGCACGCAGGTGTTGGTTCTCAAACATGAAGACCGAAGTACAGTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1827485 198 -   2996164 -----TTTTTTTA----------AAAAACCGTCTTGCAGAAAGCTCAAGGAAACATGCAGAAACTAAAGCTATTTCCTGACAATAGTAAGGACAcgaccacgaagggactcgaaccctcaatc-ttct-gatccggaatcagacgccttatccattaggccacgcggccACACGCAGGTGTTGTTTCTCAAACATGAAGACCGAAGTGCAGTGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1722724 198 -   2157725 -----TTTTTTTT----------TAAAACCGTCTTGCAGAAAGCTCAAGCAAACATGCAGAAACTAAAGCTATTTCCTGACAATAGTAAGGACAcgaccacgaagggactcgaaccctcaatc-ttct-gatccggaatcagacgccttatccattaggccacgcggccGCACGCAGGTGTTGATTCTCAAACACGAAGACTGAAGTGCAGTGGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28171757 199 -  71996105 ----TTTTTTTTT----------TAAAACCGTCTTGCAGAAAGCTCAAGGAGACACGCAGAAACTAAAGCTATTTCCTGACAATAGTAAGGACgcgaccacgaagggactcgaacccttaatc-ttct-gatccggaatcagacgccttatccattaggccacgcggccACACGCGAGGGTTGATTTTCAAACATGAAGCCTGAAGTGCAGTGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1811199 199 +   2316924 ----TTTTTTTTT----------AAAAACCGTCTTGCAGAAAGCTCAAGCAAACATGCAGAAACTAAAGCTATTTCCTCACAATAGTTAGGACAcgaccacgaagggactcgaaccctcaatc-ttct-gatccggaatcagacgccttatccattaggccacgcggccGCACGCGCGTGTTGACTCTCAAACACGAAGACTGAAGTGCAGTGGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1706243 197 -   3067355 -----TTTTTTTT-----------AAAACCGTCTTGCAGAAAGCTCAAGGAAACATGCAGAAACTAAAGCTAGTTCCTGACAATAGTAAGGACAcgaccacgaagggactcgaaccctcaatc-ttct-gatccggaatcagacgccttatccattaggccacgtggccGCACGCGAATGTTGATTTTCAAATACGAAAACTGAAGTGCAGTAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171304223 196 - 171630274 ---TTTTTTTTTT----------CTTTACTGGCTTGCAGAAAGCTCCCGAAAACACGCAGAAAGTAAAGCTGTTTTCTAAC---GGCAAAGACAcaaccatgaagggactcagaccctcaacc-ttct-gatctagaatcagatgccttaaccattaggccacgcggccACACACAAGTAGCTTTTTTCA-ATGTGAAGACTAACGTGTAGTGGG
i calJac3.chr4             I 10 C 0
s aotNan1.NW_018494050v1       71956 198 -    285216 ---TTTATTTTTC----------CTTTACTGGTTTGCAGAAAGCTCCCGAAAACATGCAGAAAGTAAAGCCGTTTTCTAAC---AGTAAAGACAcgaccacgaagggacttgaaccctcaatcattctagatctggaatcagatgccttatccattagaccatggggccACACACAAGTTCCTTTTTTCA-ACCTGAAGACTAACGTGTAGTGGG
i aotNan1.NW_018494050v1   C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e cebCap1.NW_016108108v1      124984 207 -    373274 I

a score=528718.000000
s hg38.chr6_GL000254v2_alt      8663 58 +   4827813 GAAACGTTGAGTTTCTGTTTTCAAACCTTTAACTTCGTAATTAGAGATTTAACAACTT
s panTro5.chr6              28985712 58 + 175400573 GAAACGTTGAGTTTCTGTTTTCAAACCTTTAACTTCGTAATTAGAGATTTAACAACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29229414 58 + 173848474 GAAACGTTGAGTTTCTGTTTTCAAACCTTTAACTTCGTAATTAGAGATTTAACAACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5020206 58 +   6154872 GAAACGTTGAGTTTCTGTTTTCAAACCTTTAACTTCGTAATTAGAGATTTAACAACTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74022141 58 + 122973662 GAAACGCTGAGTCTCTGTTTTCAAACCTTTAACTTCGTAATTGGAGATTTAACAACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29165552 58 + 172585720 GAAACGTTGAGTTTCTGTTTTCAAACCTTTAACTTCGCAATTGGAGATTTAACAACCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28855577 58 - 170955103 GAAACGTTGAGTTTCTGTTTTCAAACCTTTAACTTCGCAATTGGAGATTTAACAACCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1827683 58 -   2996164 GAAACGTTGAGTTTCTGTTTTCAAACCTTTAACTTCGCAATTGGAGATTTAACAACCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1722922 58 -   2157725 GAAAGGTTGAGTTTCTGTTTTCAAACCTTTAACTTCGCGATTGGAGATTTAACAACCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28171956 58 -  71996105 GAAACGTTGAGTTTCTGTTTTCAAACCTTTAACTTCGCAACTGGAGATTTAACAACCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1811398 58 +   2316924 GAAACGTTGAGTTTCTGTTTTCAAACCTTTAACTTCGCAATTGGAGATTTAACAACCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1706440 58 -   3067355 AAAACGTTGAGTTTCTGTTTTCAAACCTTTAACTTCGCAATTGCAGATTTAACAACCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171304419 58 - 171630274 GAAACGCTGAGTTTCTGTTCTCAAACTTTTAACTTCGTAATTGGAGATTTAACAACTT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      125191 58 -    373274 GAAACGTTGAGTTTCTGTTTTCAAACCTTTAACTTTGTAATTGGAGATTTAACAACTT
i cebCap1.NW_016108108v1   I 207 I 63
s aotNan1.NW_018494050v1       72154 58 -    285216 GAAACGTTGAGTTTCTGTTTTCAAACCTTTAACTTTGTAATTGGAGATTTAACAACTT
i aotNan1.NW_018494050v1   C 0 I 144
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I

a score=196002.000000
s hg38.chr6_GL000254v2_alt      8721 35 +   4827813 -GAA----GGGGGGCGGGGAG---AGGCGGGGGAGGAGGTGGG
s panTro5.chr6              28985770 35 + 175400573 -GAA----GGGGGGCGGGGAG---AGGCGGGGGAGGAGGTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29229472 35 + 173848474 -GAA----GGGGGGCGGGGAG---AGGCGGGGGAGGAGGTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5020264 34 +   6154872 -GAA-----GGGGGCGGGGAG---AGGCGGGGGAGGAGGTGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74022199 39 + 122973662 -GAAggggggggggcggggag---aggcgggggaggaggTGCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29165610 35 + 172585720 -GAA----GCGGGGCGGGGAG---AGGTGGGGGAGGATGTGCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28855635 35 - 170955103 -GAA----GCGGGGCGGGGAG---AGGTGGGGGAGGATGTGCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1827741 35 -   2996164 -GAA----GCGGGGCGGGGAG---AGGCGGGGGAGGATGTGCG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1722980 35 -   2157725 -GAA----GCGGGGCGGGGAG---AGGCGGGGGAGGATGTGCG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28172014 35 -  71996105 -GAA----GCGGGGCGGGGAG---AGGCGGGGGAGGATGCGCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1811456 35 +   2316924 -GAA----GCGGGGCGGGGAG---AGGCGGGGGAGGATGTGCG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1706498 35 -   3067355 -GAA----ACGGGGCGGGGAG---AGGCGGGGGAGGATGCGCG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171304477 39 - 171630274 GAAA----GCGGGGGTGAGAGAAAAGGCGGGCAAGGAGGCCTC
i calJac3.chr4             C 0 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       72212 144 -    285216 I
e cebCap1.NW_016108108v1      125249 63 -    373274 I

a score=27893.000000
s hg38.chr6_GL000254v2_alt      8756 4 +   4827813 CAGA
s panTro5.chr6              28985805 4 + 175400573 CAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29229507 4 + 173848474 CAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5020298 4 +   6154872 CAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74022238 4 + 122973662 CAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29165645 4 + 172585720 CAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28855670 4 - 170955103 CAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1827776 4 -   2996164 CAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1723015 4 -   2157725 CAGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28172049 4 -  71996105 CAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1811491 4 +   2316924 CAGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1706533 4 -   3067355 CAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171304516 4 - 171630274 CAGG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      125312 4 -    373274 CAGG
i cebCap1.NW_016108108v1   I 63 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       72212 144 -    285216 I

a score=881649.000000
s hg38.chr6_GL000254v2_alt      8760 103 +   4827813 AGGAATAAAACTCCATCTAAAATTCCTAATAGCAATTCCTTAGAATTATAAACTGCGAGATGATCAGAAGTGACATCTTTGCCTTCTTTGAAGGCTCTCTTCT
s panTro5.chr6              28985809 103 + 175400573 AGGAATAAAACTCCATCTAAAATTCCTAATAGCAATTCCTTAGAATTATAAACTGCGAGATGATCAGAAGTGACATCTTTGCCTTCTTTGAAGGCTCTCTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29229511 103 + 173848474 AGGAATAAAACTCCATCTAAAATTCCTAATAGCAATTCCTTAGAATTATAAACTGCGAGATGATCAGAAGTGACATCTTTGCCTTCTTTGAAGGCTCTCTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5020302  99 +   6154872 AGGAATAAAACTCCATCC----TTCCTAATAGCATTTCCTAAGAATTATAAACTGCGAGATGATCAGAAGTGACATCTTTGCCTTCTTTGAAGGCTCTCTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74022242 100 + 122973662 AGGAATAAAACTCCATCTAAAATTCCTAATAGTAATTCCTTAGAATTATAAA---CGAGATGATCAGAAGTGACATCTTTGCCTTCTTTGAAGGCTCTCTTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29165649 103 + 172585720 AGGAATAAAACTCCACCCAAAATTCCTAATAGCAATTCCTTAGAATTATAAACTGGGAGATGATCAGAAGTGACATCTTTGCCTTCTTTGAAGACTCTCTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28855674 103 - 170955103 AGGAATAAAACTCCACCCAAAATTCCTAATAGCAATTCCTTAGAATTATAAACTGGGAGATGATCAGAAGTGACATCTTTGCCTTCTTTGAAGACTCTCTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1827780 103 -   2996164 AGGAATAAAACTCCACCCAAAATTCCTAATAGCAATTCCTTAGAATTATAAACTGGGAGATGATCAGAAGTGACATCTTTGCCTTCTTTGAAGACTCTCTTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1723019 103 -   2157725 AGGAATAAAACTCCATCCAAAATTCCTAATAGCAATTCCTTAGAATTATAAACTGCGAGATGATCAGAAGTGACATCTTTGCCTTCTTTGAAGACTCTCTTCT
i cerAty1.NW_012001495v1   C 0 I 446
s chlSab2.chr17             28172053 103 -  71996105 AGGAATAAAACTCCATCCAAAATTCCTAATAGCAATTCCTTAGAATTATAAACTGCGAGATGATCAGAAGTGACATCTTTGCCTTCTTTGAAGACTCTCTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1811495 103 +   2316924 AGGAATAAAACTCCATCCAAAATTCCTAATAGCAATTCCTTAGAATTATAAACTGCGAGATGATCAGAAGTGACATCTTTGCCTTCTTTGAAGACTTTCTTCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1706537 103 -   3067355 AGGAATAAAACTCCATCCAAAATTCCTAATAGCAATTCCTTAGAATTATAAACTGCGAGATGATCAGAAGTGACATCTTTGCCTTCTTCGAAGACTCTCTTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171304520  96 - 171630274 AGGAATAAAACTTCATCTAAAATTCCTAATAGCAATTCCTTAGAATTATGAACTGCGAGATGATCAGAAGTGAC-------AATCCTCTGAAGGCTCTCTTCT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      125316  98 -    373274 AGGAATAAAACTCCATCTAAAATTCCTAATAGCAATTCCTTAGAATTATAAACTGCGAGATGATCAGAAGTGACAT-----AATCCTCTGAAGGCTCTCTTCT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       72356  98 -    285216 AGGAACAAAACTCCATCTAAAATTCCTAATAGCAATTCCTCAGAATTATAAACTGCGAGATGATCAGAAGTGATAT-----AATCCTCTGAAGGCTCTCTTCT
i aotNan1.NW_018494050v1   I 144 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I

a score=647133.000000
s hg38.chr6_GL000254v2_alt      8863 90 +   4827813 CTAAGTTACTAATAATGATAATGCACGTTCGGGTACAGAAATATGAGCCAAGAACTCAAGTCTGCAATGAAGGAGTGGACATGACAGCGT
s panTro5.chr6              28985912 90 + 175400573 CTAAGTTACTAATAATGATAATGCACGTTCGGGTACAGAAATATGAGCCAAGAACTCAAGTCTGCAATGAAGGAGTGGACATGACAGCGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29229614 90 + 173848474 CTAAGTTACTAATAATGATAATGCACGTTCGGGTACAGAAATATGAGCCAAGAACTCAAGTCTGCAATGAAGGAGTGGACATGACAGCGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5020401 90 +   6154872 CTAAGTTACTAATAATGATAATGCACGTTCGGGTACAGAAATATGAGCCAAGAACTCAAGTCTGCAATGAAGAAGTGGACATGACAGCGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74022342 90 + 122973662 CTAAGTTACTAATAATGATAATGCAAGTTCGGGTACAGAAATATGAGCCAAGAACTCAAGTCTGTAATGAAGGAGTGGACATGACTGCGT
i nomLeu3.chr1a            C 0 I 304
s rheMac8.chr4              29165752 90 + 172585720 GTAAGTTACTAATAATGATGATGCAAATTCGGGTACAGAAATACAAGCCAAGAACTCAAGTCTGCAATGAAGGAGTGGACATGACAGCGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28855777 90 - 170955103 GTAAGTTACTAATAATGATGATGCAAATTCGGGTACAGAAATACAAGCCAAGAACTCAAGTCTGCAATGAAGGAGTGGACATGACAGCGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1827883 90 -   2996164 GTAAGTTACTAATAATGATGATGCAAATTCGGGTACAGAAATACAAGCCAAGAACTCAAGTCTGCAATGAAGGAGTGGACATGACAGCGT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28172156 90 -  71996105 GTAAGTTACTAATGATGATGATGCAAATTCGGGTACAGAAATACGAGCCAAGAACTCAAGTCTGCAATGAAGGAGTGGACATGACAGCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1811598 90 +   2316924 GTAAGTTACTAATAATGATGATGCAAATTCGGGTACAGAAATACAAGCCAAGAACTCAAGTCTGCAATGAAGGAGTGGACATGACAGCGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1706640 90 -   3067355 ATAAGCTACTAATAATGATGATGCAAATTCGTGTACAGAAATACGAGCCAAGAACTCAAGTCTGCAATGAAGGAGTGGACATGACAGCGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171304616 90 - 171630274 CCAAGTTAGTAATAATGATGATGAAATTTCAGGTACAGAAATATGAGCCAGGAACTAAACTCTGCAGTGAAGGAGTGGACACAACAGCGT
i calJac3.chr4             C 0 I 3
s cebCap1.NW_016108108v1      125414 90 -    373274 CCAAGTTAGTAATAATGATGATGAAATTTCAGGTACAGAAATATGAGCCAGGAACTAAAGTCTGCAGTGAAGGAGCGGACTCAACAGCGT
i cebCap1.NW_016108108v1   C 0 I 3
s aotNan1.NW_018494050v1       72454 87 -    285216 CCAAGTTAGTAATA---ATGATGAAATTTCAGGTACAGAAATATGAGCCAGAAACTAAAGTCTGCAGTGAAGGAGTGGACGCAACAGCGT
i aotNan1.NW_018494050v1   C 0 I 3
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e cerAty1.NW_012001495v1     1723122 446 -   2157725 I

a score=823310.000000
s hg38.chr6_GL000254v2_alt      8953 115 +   4827813 AAGAGGGAGCATCATTGTTTGATCTATTTTAACCTTTTCCGTCTCAAAGATACGATGGTGCTTCCTCCAGGAAGAAAAGCCTGT-AAGCTCAAACAAGAGCT-CCCCTggaacagaa
s panTro5.chr6              28986002 115 + 175400573 AAGAGGGAGCATCATTGTTTGATCTATTTTAACCTTTTCCGTCTCAAAGATACGATGGTGCTTCCTCCAGGAAGAAAAGCCTGT-AAGCTCAAACAAGAGCT-CCCCTggaacagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29229704 115 + 173848474 AAGAGGGAGCATCATTGTTTGATCTATTTTAACCTTTTCCGTCTCAAAGATACGATGGTGCTTCCTCCAGGAAGAAAAGCCTGT-AAGCTCAAACAAGAGCT-CCCCTggaacagaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5020491 115 +   6154872 AAGAGGGAGCATCATTGTTTGATCTATTTTAACCTTTTCCGTCTCAAAGATACGATGGTGCTTCCTCCAGGAAGAAAAGCCTGT-AAGCTCAAACAAGAGCT-CCCCTggaacagaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74022736 115 + 122973662 AAGACGGAGCATCATTGTTTGATATATTTTAACCTTTTCCGTCTCAAAGATACGATGGTGCTTCCTCCAGGAAGAAAAGCCTGT-AAGCTCAAACAAGAGCT-CCCCTggaacaaaa
i nomLeu3.chr1a            I 304 C 0
s rheMac8.chr4              29165842 115 + 172585720 AAGAGGGAGCATCATTGTTTGATATATTTTAACCTTTTCCGTCTCAAAGATACGATGGTGCTTTCTCCAGGGAGAAAAGCCTGT-AAGCTCAAAGAAGAGCT-CCCCTggaacaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28855867 115 - 170955103 AAGAGGGAGCATCATTGTTTGATATATTTTAACCTTTTCCGTCTCAAAGATACGATGGTGCTTTCTCCAGGGAGAAAAGCCTGT-AAGCTCAAAGAAGAGCT-CCCCTggaacaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1827973 115 -   2996164 AAGAGGGAGCATCATTGTTTGATATATTTTAACCTTTTCCGTCTCAAAGATACGATGGTGCTTTCTCCAGGGAGAAAAGCCTGT-AAGCTCAAAGAAGAGCT-CCCCTggaacaaaa
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28172246 114 -  71996105 AAGAAGGAGCATCATTGTTTGATATATTTTAACCTTTTCCGTCTCAAAGATACGATGGTGCTTCCTCCAGGGAGAAAAGCCTGT-AAGCTCAAACAAGAGCT--CCCTggaacaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1811688 115 +   2316924 AAGAGGGAGCATCATTGTTTGATATATTTTAACCTTTTCCGTCTCAAAGATACGATGGTGCTTTCTCCAGGGAGAaaagcctgt-aagctcaaagaagagct-cccctggaacaaaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1706730 116 -   3067355 AAGAAGGAGCATCATTGTTTGATATATTTTAACCTTTTCCGTCTCAAAGATACGACGGTGCTTCCTCCAGGGAGAAAAGCTTGTAAAGCTCAAACAAGAGCT-CCCCTggaacaaaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171304709 115 - 171630274 GAGAGGGAGCATCATTGTTTCACATGTTCTGACGTTTTCCGTTTCAAAGATTCGGTGGTGCTTCCTCCTGGGAGGAAAGCCTGT-AAGCT-AAAGGAGAGCTCCCCCTggaaaaaaa
i calJac3.chr4             I 3 C 0
s cebCap1.NW_016108108v1      125507 115 -    373274 GACAGGGAACATCATCGTTTCATATGCTCTGACCTTTTCCGTTTGGAAGATACGGTGGTGCTTCCTCCTGGGAGGAAAGCCTGT-AAACT-GAACGAGAGCTCCCCCTggaacaaaa
i cebCap1.NW_016108108v1   I 3 C 0
s aotNan1.NW_018494050v1       72544 115 -    285216 GAGAGGGAGCATCATTGTTTCCTATGTTCTGACCTTTTCCGTTTCAAAGACACAGTGGTCCTTCCTCCTGGGAGGAAAGCCTGT-AAGCT-GAACGAGAGCTCCCCCTggaacaaaa
i aotNan1.NW_018494050v1   I 3 C 0
e saiBol1.JH378348            120707 1697 -    375362 M
e otoGar3.GL873742           1468624 119 -   2232465 I
e cerAty1.NW_012001495v1     1723122 446 -   2157725 I

a score=1294794.000000
s hg38.chr6_GL000254v2_alt      9068 167 +   4827813 gacactggagaccgtaagaggtgggaggttggaagggggaaaaggatagaaaaactgcctgttgggtattatgctcaccacatgggtgacgggttcaatcgtactccagacatcagcaacacgcaatacacccttgtcccaaacctgcac-tgtactccctgaatcta
s panTro5.chr6              28986117 167 + 175400573 aacactggagaccgtaagaggtgggaggttgggagggggaaaaggattgaaaaactgcctgttgggtattatgctcaccacatgggtgacgggttcaatcgtactccagacatcagcaacacgcaatacacccttgtcccaaacctgcac-tgtactccctgaatcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29229819 167 + 173848474 aacactggagaccgtaagaggtgggaggttgggagggggaaaaggattgaaaaactgcctgttgggtattatgctcaccacatgggtgacgggttcaatcgtactccagacatcagcaacacgcaatacacccttgtcccaaacctgcac-tgtactccctgaatcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5020606 167 +   6154872 gacactggagaccgtaagaggtgggaggtagggagggggaaaaggattgaaaaactgcctgttgggtattatgctcaccacatgggtgacgggttcaatcgtactccagacatcagcaacacgcaatacacccttgtcccaaacctgcac-tgtactccctgaatcta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74022851 167 + 122973662 gacactggagaatctaagaggtgggaggtagggagggggaaaaggattgaaaaactgcctgttgggtattatgctcaccacatgggtgacgggttcaatcgtaccccagacatcagcaacacgcaatacacccttgtcccaaacctacac-tgtactccctgaatcta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29165957 167 + 172585720 gacactggagaccgtaagaggtgggaggtagggagggggacaaggattgaaaaactgcctgttgagtattatgttcaccacccaggtgatgagttcaatcgtaacccagagagcggcaacacgcagtacacccttgtcccaaacctgcac-tgtactccctgcatcta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28855982 167 - 170955103 gacactggagaccgtaagaggtgggaggtagggagggggacaaggattgaaaaactgcctgttgagtattatgctcaccacctgggtgatgagttcaatcgtaacccagagagcggcaacacgcaatacactcttgtcccaaacctgcac-tgtactccctgcatcta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1828088 167 -   2996164 gacactggagaccgtaagaggtgggaggtagggagggggacaaggattgaaaaactgcctgttgagtattatgctcaccacctgggtgatgagttcaatcgtaacccagagagcggcaacacgcaatacacccttgtcccaaacctgcac-tgtactccctgcatcta
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28172360 167 -  71996105 gacactggagactgtaagaggtgggaggtagggagggggacaaggattgaaaaactgcctgttgagtattatgctcaccacctgggtgacgggttcaatcgtaacccagacagcggcaacacgcaatacactcttgtcccaaacctgcac-tgtactccctgaatcta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1811803 167 +   2316924 gacgctggagaccgtaagaggtgggaggtagggagggggacaaggattgaaaaactgcctgttgagtattatgcttaccacctgggtgatgagttcaatcgtaacccagagagcggcaacacgcaatacacccttgtcccaaacctgcac-tgtactccctgcatcta
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1706846 167 -   3067355 gacactggagactgtaagaggtgggaggtagggagggggacaaggattgaaaaactgcctgttgagtattatgctcaccacctggatgaccggttcaatcgtaacccagacagcggcaacacggaatacacccttgtcccaaacctgcac-tgtactccctgaatcta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171304824 167 - 171630274 gacactggagaccgtaacaggtggaaggtagggagggct-ccaggactgaaaaactgcctgtcgggtaccatgccgacaacatgggtgacgggtccaatggtgccccagacatcagcagcacgcaacacacccttgtcccaaacctgcacacgtactccctgaatcta
i calJac3.chr4             C 0 I 310
s saiBol1.JH378348            122404 167 -    375362 gacactggagaccctaacaggctggaggtagggagggct-ccggggctgaataactgcctgtcgggtaccacgctggcaacatggatgacgggttcagtggtgccccagacatcagcagcatgcagcacacccttgtcccaaacctgcacacgtcctccctgaatcta
i saiBol1.JH378348         M 1697 C 0
s cebCap1.NW_016108108v1      125622 167 -    373274 gaccctggagaccctaacaggcgggaggtagagagggct-ctgggattgaaaaactgcctgttgggtatcatgctggcaacatgggtgacgggttcagtggtgccccagacatcagcaccgtgcagcacacccttgtcccaaacgtgcacatgtactccctgaatcta
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       72659 154 -    285216 gacactggagaccgtaacaggcaggaggtagggagggct-ccaggattgaaaaactgcctgttgggtatcatgctgacaacatgggtgacgggttcagtgctgtcccagacatcagcagcatgcaacacatccttgttccaaacctgcacatgta-------------
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1468624 119 -   2232465 I
e cerAty1.NW_012001495v1     1723122 446 -   2157725 I

a score=-14634.000000
s hg38.chr6_GL000254v2_alt      9235 2 +   4827813 a-a
s panTro5.chr6              28986284 2 + 175400573 a-a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29229986 2 + 173848474 a-a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5020773 2 +   6154872 a-a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74023018 2 + 122973662 a-a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29166124 1 + 172585720 a--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28856149 1 - 170955103 a--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1828255 1 -   2996164 a--
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28172527 2 -  71996105 aa-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1811970 2 +   2316924 aa-
i manLeu1.NW_012104165v1   C 0 I 6225
s colAng1.NW_012115566v1     1707013 1 -   3067355 a--
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            122571 0 -    375362 C
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       72813 0 -    285216 C
e cebCap1.NW_016108108v1      125789 0 -    373274 C
e calJac3.chr4             171304991 310 - 171630274 I
e cerAty1.NW_012001495v1     1723122 446 -   2157725 I

a score=454566.000000
s hg38.chr6_GL000254v2_alt      9237 87 +   4827813 ataaaagttgaaatt--------aaaaaaaaaAAAAAAGCTCCCCCTTGTCAGAAAAGCCCCAAGT---ATTTTGCCTAAAGGTTGATTGCTCTAAGC
s panTro5.chr6              28986286 87 + 175400573 ataaaagttgaaatt--------aaaaaaaaaAAAAAAGCTCCCCCTTGTCAGAAAAGCCCCAAGT---ATTTTGCCTAAAGGTTGATTGCTCTAAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29229988 84 + 173848474 ataaaagttgaaatt-----------aaaaaaaaaAAAGCTCCCCCTTGTCAGAAAAGCCCCAAGT---ATTTTGCCTAAAGGTTGATTGCTCTAAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5020775 86 +   6154872 ataaaagttgaaatt---------aaaaaaaaaAAAAAGCTCCCCCTTTTCAGAAAAGCCCCAAGT---ATTTTGCCTAAAGGTTGATTGCTCTAAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74023020 85 + 122973662 ataaaagttgaaatt----------aaaaaaaaaTAAAGCTCCCCCTTGTCAGAAAAGCCTCAAGT---ATTTTGCCTAAAGATTGCTTGCTCTAAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29166125 92 + 172585720 ataaaagttgaaatt---aaaaaaaaaAAAACAAAAAAACTCCCCCTTGTCAGAAAAGCCCCAAGC---ATTTTGCCTAAAGGTTGCTTGCTCTAAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28856150 92 - 170955103 ataaaagttgaaatt---aaaaaaaaaAAAAAAAAAAAGCTCCCCCTTGTCAGAAAAGCCCCAAGT---ATTTTGCCTAAAGGTTGCTTGCTCTAAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1828256 91 -   2996164 ataaaagttgaaatt----aaaaaaaaaAAAAAAAAAAGCTCCCCCTTGTCAGAAAAGCCCCAAGC---ATTTTGCCTAAAGGTTGCTTGCTCTAAGC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28172529 94 -  71996105 -taaaagttgaaatttaaaaaaaaaAAAAAAAAAAAAAGCTCCCCCTTGTCAGAAAAGCCCCAAGC---ATTTTGCCTAAAGGTTGCTTGCTCTAAGC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1707014 95 -   3067355 ataaaagttgaaatt---taaaaaaaaaAAAAAAAAAAGCTCACCCTTGTCAGAAAAGCCCCAAGCAAAATTTTGCCTAAAGGTTGCTTGCTCTAAAC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            122571 71 -    375362 -----aaTTTTTTTT-------------------AAAAGGTCTCCCTTGTCGGAAAAGCCCCAAGT---ATTTTGCCTAAAGGTTGCTTGCTCCAAGC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      125789 72 -    373274 ----aaTTTTTTTTT-------------------AAAAGGTCCCCCTTGTCAGAAAAGCCCCAAGT---ATTTTGCCTAAAGGTTGCTTGCTCTAAGC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       72813 60 -    285216 -----------------------------------AAAGGTCCCCCTTGTCAGAAAAGCCCCAAGT---ATTTTGCCTAAAGGTTGCTTGCTCTAAGC
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1468624 119 -   2232465 I
e calJac3.chr4             171304991 310 - 171630274 I
e manLeu1.NW_012104165v1     1811972 6225 +   2316924 I
e cerAty1.NW_012001495v1     1723122 446 -   2157725 I

a score=629543.000000
s hg38.chr6_GL000254v2_alt      9324 92 +   4827813 TCACCTTTGGATTGATCCAGAAAACAGTCTGGGGCGA-TTTTTTGTTACCCTTTCCCCAGCTATGTCCCCTATGTTGATAGGGTAGGAAAGAT
s panTro5.chr6              28986373 92 + 175400573 TCACCTTTGGATTGATCCAGAAAACAATCTGGGGCGA-TTTTCTGTGACCCTTTCCCCAGCTATGTCCCCTATGTTGATAGGGTAGGAAAGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29230072 92 + 173848474 TCACCTTTGGATTGATCCAGAAAACAATCTGGGGCGA-TTTTCTGTGACCCTTTCCCCAGCTATGTCCCCTATGTTGATAGGGTAGGAAAGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5020861 92 +   6154872 TCACCTTTGGATTGATCCAGAAAACAATCTGGGGCGA-CTTTTTGTGACCCTTTCCCCAGCTATGTCCCCTATGTTGATAGGGTAGGAAAGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74023105 79 + 122973662 TCACCTTTGGATTGATCCAGAAAACAATCTGGGGCGA-TTTTTTGTGACCCTTTCCCCAGCTATGTCCCGTATGTTGATA-------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29166217 92 + 172585720 TCACCTTTGGATTGATCCACAAAACAATCTAGGACGA-CTTTTTGTGACCCTTTCCCCAGTTATGTCCCGTATATTGATAGGGTAGGAAAGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28856242 92 - 170955103 TCACCTTTGGATTGATCCACAAAACAATCTAGGACGA-CTTTTTGTGACCCTTTCCCCAGTTATGTCCCGTATATTGATAGGGTAGGAAAGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1828347 92 -   2996164 TCACCTTTGGATTGATCCACAAAACAATCTAGGACGA-CTTTTTGTGACCCTTTCCCCAGTTATGTCCCGTATATTGATAGGGTAGGAAAGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1723568 92 -   2157725 TCACCTTTGGATTGATCCACAAAACAATCTAGGACGA-CTTTTTGTGACCCTTTCCCCAGTTATGTCCCGTATGTTGATAGGGTAGGAAAGAT
i cerAty1.NW_012001495v1   I 446 C 0
s chlSab2.chr17             28172623 92 -  71996105 TCACCTTTGGATTGATCCACAAACCAATCTAGGACGA-CTTTTTGTGACCCTTTCCCCAGTTATGTCCCGTATATTGATAGGGTAGGaaagat
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1707109 92 -   3067355 TCACCTTTGGACTGATTCACAAAACAATCTAGGACGA-CTTTTTGTGACCCTTTCCCCAGTTATGTCCCATATATTGATAGGGTAGGaaagat
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            122642 92 -    375362 TCACCTTTGGATTGATCCGCAAAACAATTCAGGGTGA-TTTTTCGTGACCCCTTCTTTACCTATGCCCTGCATATTGACAGGGTAGGAAAGGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      125861 92 -    373274 TCACCTTTGGATTGATCCGCAAAACAATTCAGAGTGA-TTTTTTGTGACCCCTTCCTTACCTATGCCCTGCATATTGACAGGGTAGGAAAGGT
i cebCap1.NW_016108108v1   C 0 I 10
s aotNan1.NW_018494050v1       72873 93 -    285216 TCACCTTTGGATTGATCCGCAAAACACTTCAGGGTGATTTTTTTGTGACCCCTTCCTTAACTATGCCCCGCATATTGATAGGGCAGGAAAGGT
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1468624 119 -   2232465 I
e calJac3.chr4             171304991 310 - 171630274 I
e manLeu1.NW_012104165v1     1811972 6225 +   2316924 I

a score=671.000000
s hg38.chr6_GL000254v2_alt      9416 1 +   4827813 T
s panTro5.chr6              28986465 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29230164 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5020953 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29166309 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28856334 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1828439 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1723660 1 -   2157725 T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28172715 1 -  71996105 a
i chlSab2.chr17            C 0 I 13
s colAng1.NW_012115566v1     1707201 1 -   3067355 a
i colAng1.NW_012115566v1   C 0 I 11
e saiBol1.JH378348            122734 0 -    375362 C
e otoGar3.GL873742           1468624 119 -   2232465 I
e aotNan1.NW_018494050v1       72966 0 -    285216 C
e cebCap1.NW_016108108v1      125953 10 -    373274 I
e calJac3.chr4             171304991 310 - 171630274 I
e manLeu1.NW_012104165v1     1811972 6225 +   2316924 I
e nomLeu3.chr1a             74023184 0 + 122973662 C

a score=4415.000000
s hg38.chr6_GL000254v2_alt      9417 18 +   4827813 AAAAAAAAAAA----------CAAC--------AAC
s panTro5.chr6              28986466 18 + 175400573 AAAAAAAAAAA----------ACAA--------AAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29230165 17 + 173848474 AAAAAAAAAAA----------AAAC---------AC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5020954 26 +   6154872 aaaaaaaacaa----------aaacaaaaacaaaaC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29166310 24 + 172585720 aaaaaaaaaaa----aaaaaaaaaa--------aaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28856335 28 - 170955103 AAaaaaaaaaaaaacaaaaaacaaa--------aaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1828440 24 -   2996164 aaaaaaaaaaa----aaaaaaaaaa--------aaG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1723661 16 -   2157725 AAAAAAAAAAA------------AA--------AGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28172729 18 -  71996105 aaaaaaaaaaa----------aaaa--------aGA
i chlSab2.chr17            I 13 C 0
s manLeu1.NW_012104165v1     1818197 18 +   2316924 aaaaaaaaaaa----------aaaa--------aGA
i manLeu1.NW_012104165v1   I 6225 C 0
s colAng1.NW_012115566v1     1707213 19 -   3067355 aaaaaaaaaaa---------gaaga--------aGA
i colAng1.NW_012115566v1   I 11 C 0
s saiBol1.JH378348            122734 10 -    375362 AAGAAACTCA--------------------------
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1       72966 10 -    285216 AAGCAACTCA--------------------------
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1468624 119 -   2232465 I
e cebCap1.NW_016108108v1      125953 10 -    373274 I
e calJac3.chr4             171304991 310 - 171630274 I
e nomLeu3.chr1a             74023184  0 + 122973662 C

a score=4519723.000000
s hg38.chr6_GL000254v2_alt      9435 559 +   4827813 CAAGTTTGTAAAGTAAACCAATCACAGATTCCCTCAGTTTTCGCATCGTCTTGGCTTCAT-GGAAATGACGAGTTACTGGGAAGAAACTATTTCATTTTTCCAGTGCCCAGTCCTATCTCCTTTCCCCAGAGAGATGCATCTCTCAGCCCTAAACTTTT---------CCTGGATCCCTTGTACACCATTTTCTCCAGGTTTCTCCAGTCAAAACTCAAGAATTGTTTTAGGCCATATTTTGGATGGTGTATCCTATGTACACTAATTTATTAAGTAATGACCCATGTTTGAGACCACGGAAC---GCTAGTTCTGGGGCCGGACTAGATGAGTCTGGGTAGACAAAAGAAAGGTCTTCTGCTGTTCCCTATGAAACTGATTTAGTTAAGTCCCTTTCTTTCTCAGAAAGCGTCCTATGAGGAGCATTAGATTGAATAAGGGTTTCTGGTGTGATCCAGTTTGGGGAGGCTACTTGCTCTAGTCAGTGCTGAAGAATCCATCTCCATTTTGGGCAAGATGCACTACCATGACTTATGTTTCAACAGACTCAAACTTATTCA---------CATGTTTTGAA
s panTro5.chr6              28986484 559 + 175400573 CAAGTTTGTAAAGTAAACCAATCACAGATTCCCTCAGTTTTCGCATCGTCTTGGCTTCAT-GGAAATGACGAGTTACTGGGAAGAAACTATTTCATTTTTCCAGTGCCCAGTCCTATCTCCTTTCCCCAGAGAGATGCATCTCTCAGCCCTAAACTTTT---------CCTGGATCCCTTGTACACCATTTTCTCCAGGTTTCTCCAGTCAAAACTCAAGAATTGTTTTAGGCCATATTTTGGATGGTGTATCCTATGTACACTAATTTATTAAGTAATGACCCATGTTTGAGACCACCGAAC---TCTAGTTCTGGGGCCGGACTAGATGAGTCTGGGTAGACCAAAGAAAGGTCTTCTGCTGTTCCCTATGAAACTGATTTAGTTAAGTCCCTTTCTTTCTCAGAAAGCGTCCTATGAGGAGCATTAGATTGAATAAGGGTTTCTGGTGTGATTCAGTTTGGGGAGGCTACTTGCTCTAGTCAGTGCTGAAGAATCCAACTCCATTTTGGGCAAGATGCACTACTATGACTTATGTTTCAACAGACTCAAACTTATTCA---------CATGTTTTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29230182 559 + 173848474 CAAGTTTGTAAAGTAAACCAATCACAGATTCCCTCAGTTTTCGCATCGTCTTGGCTTCAT-GGAAATGACGAGTTACTGGGAAGAAACTATTTCATTTTTCCAGTGCCCAGTCCTATCTCCTTTCCCCAGAGAGATGCATCTCTCAGCCCTAAACTTTT---------CCTGGATCCCTTGTACACCATTTTCTCCAGGTTTCTCCAGTCAAAACTCAAGAATTGTTTTAGGCCATATTTTGGATGGTGTATCCTATGTACACTAATTTATTAAGTAATGACCCATGTTTGAGACCACCGAAC---TCTAGTTCTGGGGCCGGACTAGATGAGTCTGGGTAGACCAAAGAAAGGTCTTCTGCTGTTCCCTATGAAACTGATTTAGTTAAGTCCCTTTCTTTCTCAGAAAGCGTCCTATGAGGAGCATTAGATTGAATAAGGGTTTCTGGTGTGATCCAGTTTGGGGAGGCTATTTGCTCTAGTCAGTGCTGAAGAATCCAACTCCATTTTGGGCAAGATGCACTACTATGACTTATGTTTCAACAGACTCAAACTTATTCA---------CATGTTTTGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5020980 557 +   6154872 CAAGTTTGTAAAGTAAACCAATCACAGATTCCCTCAGTTTTCGCATCGTCTTGGCTTCGT-GGAAATGACGAGTTACTGGGAAGAAACTATTTCATTTTTCCAGTGCCCAGTCCTATCTCCTTTCCCCAGAGAGATGCATCTCTCAGCCCTAAACTTCT---------CCTGGATCCCTTGTACACCATTTTCTCCAGGTTTCTCCAGTCAAAACTCAAGAATTGTTTTAGGCCATATTTTGGATGGTATATCCTATGTACACTAATTTATTAAGTAATGACCCATGTTTGAGACCACCGAAC---GCTAGTTCTGGGGCCGGACTAGATGAGTCTGGGTAGACCAAAGAAAGGTCTTCTGCTGTTCCCTATGAAACTGATTTAGTTAAGTCCCTTTCTTTCTCAGAAAGCGTCCTATGAGGAGCATTAGACTGAATAATGGTTTCTGGTGTGATCCAGTTTGGGGAGGCTACTTGCTCTAGTCAATGCTGAAGAATCCAACTCCACTTTGGGCAAGATGCACTACCAGGACTTATGTTTCAACAGACTCAAACTTATTCA---------C--GTTTTGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74023184 553 + 122973662 -------GTAAAGTAAACCAATCACAGATTCCCTCAGTTTTCTCATCGTCTTGGCTTCGTGGGAAATGACGAGTTACTGGGAAGAAACTATTTCATTTTTCCAGTGCCCAGTCCTGTCTCCTTTTCCCAGAGAGATGCATCTCTCAGCCCTAAACTTCT---------CCTGGATCCCTTGTACACCATTTTCTACAGGTTTCTCCAGTCAAAACTTAAGAATTGTTTTAGGCCATATTTTGGATGGTATACCCCATGTACATTAATTTATTAAGTAATGACCCATGTTTGAGACCACCGAAC---GCTAGTTCTGGGGCCGGACTAGATGAGTCTGGGTAGACCAAAGAAATGTCTTCTGCTGTTTCCTATGAAACTGATTTAGTTAAGTCCCTTTCTTTCTCTGAAAGCGTCCTATGAGGAGCATTAGATTGAATAATGGTTTCTGGTGTGATCCAGTTTGGGGAGGCTACCTGCTCTAGTCAATGCTGAAGAATCCAACTCCACTTTGGGCAAGATACACTACCAGGACTTATGTTTCAACAGACTCAAACTTATTCA---------CATGTTTTGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29166334 557 + 172585720 caaGTTTGTAAAGTAAACCAATTGCAAATTCCCTCAGTTTTCGCGTGGTCTTGGCTTCGT-AGAAATGAAGAGCTACTGGGAAGAAAC--TTTCATTTTTCCAGTGCCCAGTCTTACCTCCTTTCCCGAGAGAGATGCATCTCTCAGCCCTTAACTTGT---------CCTGGATCCCTTGTACACCATTTTCTCCAGGTTTCTCCAGTCAAAACTCAAGAATTGTTTTAGGCCATATTTTGGATGGTATATCCTATGTGCACTAATTTATCAAGTAATGACCCATGTATGAGACCACCGAAC---GCTAATTCTGGTGCCGGAGTAGATGAGTCTGGGTAGACCAAGGAAATGTCTTCTACTGTTTCCTATGAAACCGATTTAGTTAAGTCCCTTTCTTTCTCGGAAAGCGTCCTATGAGGGGTATTAGATTGAATAATGGTTTCTGGTGTGATCCAGTTTGGGGAGGCTACTTACTCTAGTCAATGCTGAAGAATCCAACTCCACTTTGAGCAAGATGCCCTACCAGGACTTATGTTCCAACAGACTCAAACTTATTCA---------CGTGTTTTGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28856363 557 - 170955103 caaGTTTGTAAAGTAAACCAATTGCAAATTCCCTCAGTTTTCGCGTGGTCTTGGCTTCGT-AGAAATGACGAGCTACTGGGAAGAAAC--TTTCATTTTTCCAGTGCCCAGTCTTACCTCCTTTCCCGAGAGAGATGCATCTCTCAGCCCTTAACTTGT---------CCTGGATCCCTTGTACACCATTTTCTCCAGGTTTCTCCAGTCAAAACTCAAGAATTGTTTTAGGCCATATTTTGGATGGTATATCCTATGTGCACTAATTTATCAAGTAATGACCCATGTATGAGACCACCGAAC---GCTAGTTCTAGTGCCGGAGTAGATGAGTCTGGGTAGACCAAGGAAATGTCTTCTACTGTTTCCTATGAAACCGATTTAGTTAAGTCCCTTTCTTTCTCGGAAAGCGTCCTATGAGGGGTATTAGATTGAATAATGGTTTCTGGTGTGATCCAGTTTGGGGAGGCTACTTACTCTAGTCAATGCTGAAGAATCCAACTCCACTTTGGGCAAGATGCCCTACCAGGACTTATGTTCCAACAGACTCAAACTTATTCA---------CGTGTTTTGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1828464 557 -   2996164 CAAGTTTGTAAAGTAAACCAATTGCAAATTCCCTCAGTTTTCGCGTGGTCTTGGCTTCGT-AGAAATGACGAGCTACTGGGAAGAAAC--TTTCATTTTTCCAGTGCCCAGTCTTACCTCCTTTCCCGAGAGAGATGCATCTCTCAGCCCTTAACTTGT---------CCTGGATCCCTTGTACACGATTTTCTCCAGGTTTCTCCAGTCAAAACTCAAGAATTGTTTTAGGCCATATTTTGGATGGTATATCCTATGTACACTAATTTATCAAGTAATGACCCATGTATGAGACCACCGAAC---GCTAGTTCTGGGGCCGGAGTAGATGAGTCTGGGTAGACCAAGGAAATGTCTTCTACTGTTTCCTGTGAAACCGATTTAGTTAAGTCCCTTTCTTTCTCGGAAAGCGTCCTATGAGGGGTATTAGATTGAATAATGGTTTCTGGTGTGATCCAGTTTGGGGAGGCTACTTACTCTAGTCAATGCTGAAGAATCCAACTCCACTTTGGGCAAGATGCCCTAGCAGGACTTATGTTCCAACAGACTCAAACTTATTCA---------CGTGTTTTGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1723677 557 -   2157725 CAAGTTTGTAAAGTAAACCAATTGCAAATTCCCTCAGTTTTCGCGTGGTCTTGGCTTCGT-AGAAATGACGAGCTACTGGGAAGAAAC--TTTCATTTTTCCAGTGCCCAGTCTTATCTCCTTTCCCGAGAGAGATGCATCTCTCAGCCCTTAACTTGT---------CCTGGATCCCTTGTACACCATTTTCTCCAGGTTTCTCCAGTCAAAACTCAAGAATTGTTTTAGGCCATATTTTGGATGGCATATCCTATGTACACTAATTTATCAAGTAATGACCCATGTATGAGACCACCGAAC---GCTAGTTCTGGGGCCGGAGAAGATGAGTCTGGGTAGACCAAGGAAATGTCTTCTACTGTTTCCTATGAAACCGATTTAGTTAAGTCCCTTTCTTTCTCGGAAAGCATCCTATGAGGGGTATTAGATTGAATAATGGTTTCTGGTGTGATCCAGTTTGGGGAGGCTACTTACTCTAGTCAATGCTGAAGAATCCAACTCCACTTTGGGCAAGATGCCCTACCAGGACTTATGTTCCAACAGACCCAAACTTATTCA---------CGTGTTTTGAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28172747 557 -  71996105 CAAGTTTGTAAAGTAAACCAATTGCAAATTCCCTCAGTTTTCGCGTCGTCTTGGCTTCGA-GGAAATGACGAGCTACTGGGAGGAAAC--TTTCATTTTTCCAGTGCCCAGTCTTATCTCCTTTCCCAAGAGAGATGCATCTCTCAGCCCTTAACTTGT---------CCTGGATCCCTTGTACACTATTTTCTCCAGGTTTCTCCAGTCAAAACTTAAGAATTGTTTTAGGCCATATTTTGGATGGTATATGCTATGTACACTAATTTATCAAGTAATGACCCATGTATGAGACCACCGAAC---GCTAGTTCTGGGGCCGGAGTAGATGAGTCTGAGTAAACCAAGGAAATGTCTTCTGCTGTTTCCTATGAAACCGATTTAGTTAAGTCCGTTTCTTTCTCAGAAAGCGTCCTATGAGGAGTATTAGATTGAATAATGGTTTCTGGTGTGACCCAGTTTAGGGAGGCTACTTACTCTAGTCAATGCTGAAGAATCCAACTCCACTTTGGGCAAGATGCCCTACCAGGACTTATGTTCCAACAGACTCAAACTTATTCA---------CGTGTTTTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1818215 557 +   2316924 CAAGTTTGTAAAGTAAACCAATTGCAAATTCCCTCAGTTTTCGCGTGGTCTTGGCTTCGT-AGAAATGACGAGCTACTGGGAAGAAAC--TTTCATTTTTCCAGTGCCCGGTCTTATCTCCTTTCCCGAGAGAGATGCATCTCTCAGCCCTTAACTTGT---------CCTGGATCCCTTGTACACCATTTTCTCCAGGTTTCTCCAGTCAAAACTCAAGAATTGTTTTAGGCCATATTTTGGATGGCATATCCTATGTACACTAATTTATCAAGTAATGACCCATGTATGAGACCACCGAAC---GCTAGTTCTGGGGCCGGAGAAGATGAGTCTGGGTAGACCAAGGAAATATCTTCTACTGTTTCCTATGAAACCGATTTAGTTAAGTCCCTTTCTTTCTCGGAAAGCATCCTATGAGGGGTATTAGATTGAATAATGGTTTCTGGTGTGATCCAGTTTGGGGAGGCTACTTACTCTAGTCAATGCTGAAGAATCCAACTCCACTTTGGGCAAGATGCCCTACCAGGACTTATGTTCCAACAGACTCAAACTTATTCA---------CGTGTTTTGAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1707232 557 -   3067355 CAAGTTTGTAAAGTAAACCAACTGCAAATTCCCTCAGTTGTCGCGTCGTCTTGGCTTCGT-GGAAATGACCAGCTACTGGGAAGAAAC--TTTCATTTTTCCGGTGCCCAGTCTTATCTCCTTTCCCGAGAGAGATGCATCTCTCAGCCCTAAACTTGT---------CCTGGATCCCTTGTACACCATTTTCTCCAGGTTTCTCCAGTCAAAACTCAAGAATTGTTTTAGGCCATATTTTGGATGGTATATCCTATGTACACTAATTTATCAAGTAATGACCCATGTATGAGACCACCGAAC---GCTAGTTCTGGGGCCGGAGTAGATGAGTCTGGGTAGACCAAGGAAATGTCTTCTGCTGTTTCCTATGAAACTAATTTAGTTAAGTCCCTTTCTTTCTCGGAATGCATCCTATGAGGAGTATTAGAATGAATAATGGTTTCTGGTGTGATCCAGTTTGGGGAGGCTACTTACTCTAGTCAATGCTGAAGAATCCAACTCTACTTTGGGCAAGGTACCCTACCAGGACTTATGTTTCAACAGACTCAAACTTATTCA---------CGTGTTTTGAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            122744 543 -    375362 CAAGTTTGTCAAGTAAACCAGTTGCAGATTCCCTCAGTTTTCACATCGTCTTGGCTTCGT-AGAAATGACGAGTTATTGGGAAGAAACAATTTCA-------------------------CTTTTCCCAG---------TCTCTCATCCCTAAACTTCTCCATTTGTACCTGGATCCCTTGTTCACCATTTTCTCCAGGTTTAT---GTCAAAACTCAAGCCCTGTTTTAGGCCATATTTTGAATGGTATATCCTATGTACACTAATTTATGAAGTAATGACCCATGTTTGAGGCCTCGGAACTCATCTAGTTCTGGGGCCAGACTAGATGAGTCTGGGTAGCCCCAAGAAATATCTTCTGCTGTGCCCTATTAAACTGATTTCGTTAAGTTCTTTTCTTTATCGAAACATTTCCTATGTGAAGCAATAGATCGACTCATGGCTTCTGGTGTGATGCAGTTTGGTGAGGCTGCATGCTGGAGCCAGTGATGAAGAATCCAGCTCCACTTTGGGCAGGATGCCCTATCGGGACTCATGTTCTAACAGACTCAAATTTATTTAAGTCATGTGAATGTTTTAAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      125963 540 -    373274 CAAGTTTGTCAAGTAAACCAGTTGCAGATTCACTCAGTTTTCACATCATCTTGGCTTTGT-AGAAATGACGAGTTATTGGGAAGAAACAATTTCA-------------------------CTTTTCCCAGAGAGAAGCATCTCTCATCCCTAAACTTCTCCATTTGTACCTGGATCCCTTGTTCACCATTTTCTCCAGGTTTAT---GTCAAAATTCAAGCCCTGTTTTAGGCCATATTTTGAATGGTATATCCTATGTACACTAATTTATCAAGTAATGACCCATGTTTGAGGCCTTGGAAC---ACTAGTTCTGGGGCCAGACTACATGAGTCTGGGTAGACCAAGGAAATGTCTTCTGCTGTTCCCTATTAAACTGATTTAGTTAAGTTCCTTTCTTTATCCAAACGTGTCCTATGAGAAGCATTAGATCGACTCATGGCTTCTGGTGTGATGCAGTTTGGTGAGGCTGCATGCTCGAGCCAGTGATGAAGAATCCAGCTCCATTTTGGGCAGGATACCCTGACAGGACTCATGTTCTAACAGACTCAAATGTATTCA---------CATGTTTTAAG
i cebCap1.NW_016108108v1   I 10 I 295
s aotNan1.NW_018494050v1       72976 526 -    285216 CAAGTTTGTAAAGTAAACCAGTTGCAGATTCACTCAGTTTTCACATCGTCTTGGCTTCGT-AGAAATGACGAGTTTTTGGGAAGAAACAATTTCA-------------------------CTTTTACCAGAGAAAAGCATCTCTCATCCCTAAACTTCTCCATTTGTACCTGGATCCCTTGTTCACCATTTTCTCCAGGTTTAT---GTCAAAACTCAAGAACTGTTTTAGGTCATATTTTGAATGGTATATCCTATGTACACTAATTTATCAAGTAATGACCTGTGTTTGAGGCCTCAGAAC---ACTAGTTC--------ATCTAGATGAGTCTGGGTAGACCAAGGAAATGTCTTCTGCTGTCCCCTATTAAACTGATTTAGTTAAGTTCCTTTCTTTATCAAAATGTGTCCTGTGAGAAGCATTAGATCGACTCATGGCTTCCGGTGTGATGCAGTTTGCTGAGGCTGCATGCTCCAGCCAGTGATGAAGAATCCAGCTCCACTTTGGGCAGGATACCCTATCAGGACTCATGTTCTAACAGACTCAAACTTATTCA---------CATGT------
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1468624 119 -   2232465 I
e calJac3.chr4             171304991 310 - 171630274 I

a score=461099.000000
s hg38.chr6_GL000254v2_alt      9994 50 +   4827813 ATTGTTCTCAGTTTTGCTTCCTCACCTTCTCACTAGTGGATTTTGTGCCC
s panTro5.chr6              28987043 50 + 175400573 ATTGTTCTCAGTTTTGGTTCCTCACCTTCTCACTAGTGGATTTTGTGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29230741 50 + 173848474 ATTGTTCTCAGTTTTGGTTCCTCACCTTCTCACTAGTGGATTTTGTGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5021537 50 +   6154872 ATTGTCCTCAGTTTTGGTTACTCACCTTCTCACTAGTGGATTTTGTGCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74023737 50 + 122973662 ATTGTTCTCAGTTTTGGTTCCTCATCTTCTCACTAGTGGATTTTGTGCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29166891 50 + 172585720 ATTGTTCTCAGTTTTGGTTCCTCACCTTCTCACTAGTGGATGTTGTGCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28856920 50 - 170955103 ATTGTTCTCAGTTTTGGTTCCTCACCTTCTCACTAGTGGATGTTGTGCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1829021 50 -   2996164 ATTGTTCTCAGTTTTGGTTCCTCACCTTCTCACTAGTGGATGTTGTGCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1724234 50 -   2157725 ATTGTTCTCAGTTTTGGTTCCTCACCTTCTCACTAGTGGATGTTGTGCCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28173304 50 -  71996105 ATTGTTCTCAGTTTTGGTTCCTCACCTTCTCACTAGTGGATGTTGTGCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1818772 50 +   2316924 ATTGTTCTCAGTTTTGGTTCCTCACCTTCTCACTAGTGGATGTTGTGCCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1707789 50 -   3067355 ATTGTTCTCAGTTTTGGTTCCTCACCTTCTCACTAGTGGATGTTGTGCCC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            123287 50 -    375362 ATTTATCTCAGTTTTGGTTCCTCGCCTTCTTACTGGTGGATTTTGTGCCC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      126798 50 -    373274 ATTGTTCTCAGTTTTGGTTCCTCACCTTCTCACTAGTAGATTTTGTGCCC
i cebCap1.NW_016108108v1   I 295 C 0
s aotNan1.NW_018494050v1       73502 49 -    285216 -TTGTTCTCAGTTTTGATTCCTCACCTTCTCACTAGTGGATTTTGTGCCC
i aotNan1.NW_018494050v1   C 0 I 313
e otoGar3.GL873742           1468624 119 -   2232465 I
e calJac3.chr4             171304991 310 - 171630274 I

a score=2376564.000000
s hg38.chr6_GL000254v2_alt     10044 319 +   4827813 AAAGAATAGCAATCC-AAAATCTCAAAATCTAACAAATTTAAATAAAAGGGCA--TTTTTTGTTCAGTCTGGAGGAGGAAAAGTTAACTGGCAGACGTAGGCAGCAGATAGTAAAGTTGGCACAGTTAGTAAGGTTGGTAGACTGAGCCAAACCATCGAAATCtatttatttattgttatatttatttatttattta-tttattCctgctgtttgcagagcaggggtaccctatagaaagtgtgtccaaagtagcCTGAAATTTCTTTCTTCAGGAAGATGCTAAAAAGGATTGGCACTGAGATTTGAAAGAATAATGCTAAG
s panTro5.chr6              28987093 315 + 175400573 AAAGAATAGCAATCC-AAAATCTCAAAATCTAACAAATTTAAATAAAAGGGCA--TTTTTTGTTCAGTCTGGAGGAGGAAAAGTTAACTGGCAGACAAAGGCAGCAGATAGTAAAGTTGGCACAGTTAGTAAGGTTGGTAGACAGAGCCAAACCATTGAAatctatttatttattgtta----tatttatttattta-tttattCctgctgtttgcggagcaggggtaccctatagaaagtgtgtccaaagtagcCTGAAATTTCTTTCTTCAGGAAGATGCTAAAAAGGATTGGCACTGAGATTTGAAAGAATAATGCTAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29230791 315 + 173848474 AAAGAATAGCAATCC-AAAATCTCAAAATCTAACAAATTTAAATAAAAGGGCA--TTTTTTGTTCAGTCTGGAGGAGGAAAAGTTAACTGGCAGACAAAGGCAGCAGATAGTAAAGTTGGCACAGTTAGTAAGGTTGGTAGACAGAGCCAAACCATTGAAatctatttatttattgtta----tatttatttattta-tttattCctgctgtttgcggagcaggggtaccctatagaaagtgtgtccaaagtagcCTGAAATTTCTTTCTTCAGGAAGATGCTAAAAAGGATTGGCACTGAGATTTGAAAGAATAATGCTAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5021587 315 +   6154872 AAAGAATAGCAATCC-AAAATCTCAAAATCTAACAAATTTAAATAAAAGGGCA--TTTTTTGTTCAGTCTGGAGGAGGAAAAGTTAACTGGCAGACATAGGCAGCAGATAGTAAAGTTGGCACAGTTAGTAAGGTTGGTAGACTGAGCCAAACCATCGAAatctatttatttattgtta----tatttatttattta-tttattCctgctctttgcagagcaggggtaccctatagaaagtgtgtccaaagtagcCTGAAATTTCTTTCTTCAGGAAGATGCTAAAAAGGATTGGCACTGAGATTTGAAAGAATAATGCTAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74023787 307 + 122973662 AAAGAATAGCAATCC-AAAATCTCAAAATCTAAGACATTTAAATAAACGGGCA--TTTTTTGTTCAGTCTGGAGGAGGAAAAGTTAACTGGCAGACATAGGCAGCAGATAGTAAAGTTGGCACAGTTAGTAAGGTTGGCAGACTGAGCAAAACCATCGAAatttatttatttattgtta------------tattta-ttttttCctgctctttgcagagcagggctaccctatagaaagtgtgtccaaaatagcCTGAAATTTCTTTCTTCAGGAAGATGCTAGAAAGGATTGGCACTGAGATTTGAAAGAATAATGCTAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29166941 300 + 172585720 AAAGAAGAGCAACCC-AAAATCTCAAAATCTAACAAATTTAAATAAATGGGCA-TTTTTTTGTTCAGTCTGGAGGAGGAAAAGTTAACTGGCAGACATAGACAGCAATTAATAAAGTTGGCACAGTTAGTAAGATTGGCATACTGAGCAAAACCGTCAAA--------AAT------------TATTTATTTATTTA-CTTTTTCctgctctttgcagagcagggctaccctatagaaagtgtgtccaaagtagcCTGAAATTTCTTTCTTCAGGAGGATGCTAAAAAGGATTGGCACTGAAATTTGAAAGAATAATACTAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28856970 300 - 170955103 AAAGAAGAGCAACCC-AAAATCTCAAAATCTAACAAATTTAAATAAATGGGCA-TTTTTTTGTTCAGTCTGGAGGAGGAAAAGTTAACTGGCAGACATAGACAGCAATTAGTAAAGTTGGCACAGTTAGTAAGATTGGCATACTGAGCAAAACCGTCAAA--------AAT------------TATTTATTTATTTA-CTTTTTCctgctctttgcggagcagggctaccctatagaaagtgtgtccaaagtagcCTGAAATTTCTTTCTTCAGGAGGATGCTAAAAAGGATTGGCACTGAAATTTGAAAGAATAATACTAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1829071 300 -   2996164 AAAGAAGAGCAACCC-AAAATCTCAAAATCTAACAAATTTAAATAAATGGGCA-TTTTTTTGTTCAGTCTGGAGGAGGAAAAGTTAACTGGCAGACATAGACAGCAATTAGTAAAGTTGGCACAGTTAGTAAGATTGGCATACTGAGCAAAACCGTCAAA--------AAT------------TATTTATTTATTTA-CTTTTTCctgctctttgcggagcagggctaccctatagaaagtgtgtccaaagtagcCTGAAATTTCTTTCTTCAGGAGGATGCTAAAAAGGATTGGCACTGAAATTTGAAAGAATAATACTAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1724284 301 -   2157725 AAAGAAGAGCAACCC-AAAATCTCAAAATCTAATAAATTTAAATAAATGGGCATTTTTTTTGTTCAGTCTGGAGGAGGAAAAGTTAACTGGGAGACATAGACAGCAATTAGTAAAGTTGGCACCGTTAGTAAGATTGGCATACTGAGCAAAACCGTCAAA--------AAT------------TATTTATTTATTTA-CTTTTTCctgctctttgcagagcagggctaccctatagaaagtgtgtccaaagtagcCTGAAATTTCTTTCTTCAGGAGGATGCTAAAAAGGATTGGCACTGAAATTTGAAAGAATAATACTAAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28173354 308 -  71996105 AAAGAATAGCAACCC-AAAATCTCAAAATCTAACAAATTTAAATAAATGGTCA-TTTTTTTGTTCAGTCTGGAGGAGGAAAGGTTAACTGGCAGACATAGACAGCAGTTAGTGAAGTTGGCACAGTTAGTAAGATTGGCACACTGAGCAAAACCATCAAAatttatttatt------------tatttatttattta-CTTTTTCCTGCTCTTTGCTGAGCAGGTCTACCCTATAGAAAGTGTGTCCAAAGTAGCCTGAAATTTCTTTCTTCAGGAGGATGCTAAAAAGGATTGGCACTGAAATTTGAAAGAATAATACTAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1818822 300 +   2316924 AAAGAAGAGCAACCC-AAAATCTCAAAATCTAACAAATTTAAATAAATGGGCA-TTTTTTTGTTCAGTCTGGAGGAGGAAAAGTTAACTGGGAGACATAGACAGCAATTAGTAAAGTTGGCACCGTTAGTAAGATTGGCATACTGAGCAAAACCGTCAAA--------AAT------------TATTTATTTATTTA-CTTTTTCctgctcttcgcagagcagggctaccctatagaaagtgtgtccaaagtagcCTGAAATTTCTTTCTTCAGGAGGATGCTAAAAAGGATTGGCACTGAAATTTGAAAGAATAATACTAAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1707839 302 -   3067355 AAAGAATAGCAACCCAAAAATCTCAAAATCTAACAAATTTAAATAAATGGGCATTTTTTTTGTTCAGTCTGGAGGAGGAAAAATTAACTGGCAGACATAGACAGCAGTTAGTAAAGTTGGCAC----AGTAAGATTGGCATACTGAGCAAAACCATCAAA----atgtatt------------tatttatttattta-ctttttCctgctctttgaggagcagggctaccctacagaacgtgtgtccaaagtagcCTGAAATTTCTTTCTTCAGAAGGATGCTAAAAAGGATTGGCACTGAAATTTGAAAGAATAATACTAAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            123337 315 -    375362 AAAGAACAGCAATCC-AAAATCTCAAAATCTAACAAGTTTAAATAGACGGGTA--TTTTTTGTTCAGTCGGGAGGATGAAAAGTTAACCCGCAGACAGAGGCAGCAGTTAGTTAAGCTGGCATAGTGAGTAAGGTTGGCAGACTGAGCAAGACCACCGAAatttatttacttattatta----tttttatttatttatttttttaCTATTCTTTGTGGAGCAAAACTACCCTATAGAA-GTGTGCCCAAAATAGCCTGAAATGTCTTTCTTCAGGAGAACGCTAAAAAGGATTGCCACAGATATTTTAAAGAATAATACTAgg
i saiBol1.JH378348         C 0 I 324
s cebCap1.NW_016108108v1      126848 307 -    373274 AAAGAATAGCAGTCC-AAAATCTCAAAATCTAACAAGGTTAAATAGATGGGTA--TTTTTTGTTCAGTCGGGAGGAGGAAAAGTTAACTGGCAGACATAGGCAGCAGTTAGTTACGTTGGCATAGTGAGTAAGGTTGGCAGACT----AATACCACCGAAatttatt---ttattatta----tttttatttattta-tttTTtactgctctttgtggagtaaaactaccctatagaa-gtgtgctcaaaatagcCCGAAATGTCTTTCTTCAGGAGAATGCTAAAAAGGATTGGCACTGATATTTTAAAGAATAATACGAAC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       73864 311 -    285216 aaagaaTAGCAATCC-AAAATCTCAAAATCTAACAAGTTTAAATAGACGGGTATTTTTTTTGTTCAGTCGGGAGCAAGAAAA-TTAACTGGCAGACATTGGCAGC----AGTCAAGCTGGCATAGTGAGTAAGGTTGGCAGACTGAGCAAGACCACCGAAatctatttacttattacta----tttttatttattta-ttttttaCTGCTCTTTGTGGAGCAAAACTACCCTGTAGAA-GTGTGCCCAAAATAGCCTGAAATGTCTTTCTTCAGCAGAATGCTAAAAAGGATTGGCACTGATATTTTAAAGAATAATACTAAC
i aotNan1.NW_018494050v1   I 313 C 0
e otoGar3.GL873742           1468624 119 -   2232465 I
e calJac3.chr4             171304991 310 - 171630274 I

a score=1140279.000000
s hg38.chr6_GL000254v2_alt     10363 131 +   4827813 AAACTATTAAATTGTATGAAATGTTTGTTTATACCAGTGATACCATTTCCTTTCCAAAGCCTTTCAGTGTTTTCTCTGATGCCTTTTGATTTTTATCTGATGGGTTCCAGGCAAGATTCCTTTAAAATGTT
s panTro5.chr6              28987408 131 + 175400573 AAACTATTAAATTGTATGAAATGTTTGTTTATACCAGTGATACCATTTCCTTTCCAAAGCCTTTCAGTGTTTTCTCTGATGCCTTTTGATTTTTATCTGATGGGTTCCAGGCAAGATTCCTTTAAAATGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29231106 131 + 173848474 AAACTATTAAATTGTATGAAATGTTTGTTTATACCAGTGATACCATTTCCTTTCCAAAGCCTTTCAGTGTTTTCTCTGATGCCTTTTGATTTTTATCTGATGGGTTCCAGGCAAGATTCCTTTAAAATGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5021902 131 +   6154872 AAGCTATTAAATTGTATGAAATGTTTGTTTATACCAGTGATACCATTTCCTTTCCAAAGCCTTTCAGTGTTTTCTCTGATGACTTTTGATTTTTATCTGATGGGTTCCAGGCAAGATTCCTTTAAAATGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74024094 131 + 122973662 AAACTATTAAATTGTATAAAATGTTTGTTTATACCAGTGATAGCATTTCCTTTCCAAAGCCTTTCAGTGTTTTCTCTGATGCCTTTTGATTTTTATCTGATGTGTTCCAGGCAAGATTCCTTTAAAATTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29167241 131 + 172585720 AAGCTATTAAATTGTATAAAATGTTTGTTTATACCAGTGATACCACTTCCTCTCCAAAGCCTTTCAAAGTTTTCTCTGGTGCCTTTTGATTTTTATCTGATGTGTTCCAGGCAAGATTCCTTTAAAATTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28857270 131 - 170955103 AAGCTATTAAATTGTATAAAATGTTTGTTTATACCAGTGATACCACTTCCTCTCCAAAGCCTTTCAAAGTTTTCTCTGGTGCCTTTTGATTTTTATCTGATGTGTTCCAGGCAAGATTCCTTTAAAATTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1829371 131 -   2996164 AAGCTATTAAATTGTATAAAATGTTTGTTTATACCAGTGATACCACTTCCTCTCCAAAGCCTTTCAAAGTTTTCTCTGGTGCCTTTTGATTTTTATCTGATGTGTTCCAGGCAAGATTCCTTTAAAATTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1724585 131 -   2157725 AAGCTATTAAATTGTATAAAATGTTTGTTTATACCAGTGATGCCACTTCCTCTCCAAAGCCTTTCAAAGTTTTCTCTGGTGCCTTCTGATTTTTATCTGATGTGTTCCAGGCAAGATTCCTTTAAAATTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28173662 131 -  71996105 AAGCTATTAAATTGTATAAAATGTTTGTTTATACCAGTGATACCACTTCCTCTCCAAAGCCTTTCAAAGTTTTCTCTGGTGCCTTTTGATTTTTATCTGATGTGTTCCAGGAAAGATTCCTTTAAAATTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1819122 131 +   2316924 AAGCTATTAAATTGTATAAAATGTTTGTTTATACCAGTGATACCACTTCCTCTCCAAAGCCTTTCAAAGTTTTCTCTGGTGCCTTCTGATTTTTATCTGATGTGTTCCAGGCAAGATTCCTTTAAAATTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1708141 131 -   3067355 AAGCTATTAAATTGTATAAAATGTTTGTTTATACCAGTGATACCACTTCCTCTCCAAAGCCTTTCAAAGTTTTCTCTGGTGCCTTTTGATTTTTATCTGATGTGTTCCAGGCAAGATTCCTTTAAAATTTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            123976 131 -    375362 AAGCTGTTAAATCGTATGAAATGTTTGTTTATACCAATAATACAATTTGCTCTCCAAAGCCTTTCAGTGTTTTCTCTGGTGCCTTTTGATTTTTCTCTGGTGTGTTCCAGGCAAGATTCTTTTACAATGTT
i saiBol1.JH378348         I 324 C 0
s cebCap1.NW_016108108v1      127155 131 -    373274 AATCTATCAAATCATATAAAATGTTTGTTTATACCAGTAATACAATTTACTCTCCAAAGCCTTTCAGTGTTTTCTCTGGTGCTTTTTGATTTTTATCTGATGTGTTCCAGGCAAGATTCTTTTACAATGTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       74175 130 -    285216 AAGCTATTAAATCATGTAAAA-GTTTGTTTATACTAGTAATACAATTTGCTCTCCAAAGCCTTTCAGTGTTTTCTCTGGTGCCTTTTGATTTTTATCTGATGTGTTCCAGGCAAGATTCTTTTACAATGTT
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1468624 119 -   2232465 I
e calJac3.chr4             171304991 310 - 171630274 I

a score=1358965.000000
s hg38.chr6_GL000254v2_alt     10494 141 +   4827813 TAAATATTTCTAACAAAAGTATTTTGGGAGGAATCCAAGAGAGATTTGAAAGTATGACATTCTTAATCTCTCTATAAC---AATCTGTCTAGATAATTTCACTGAAGAAATGAATGGAGGAGGGTGTCTGTAGATAAAGGTTTC
s panTro5.chr6              28987539 141 + 175400573 TAAATATTTCTAACAAAAGTATTTTGTGACGAATCCAAGAGAGATTTGAAAGCATGACATTCTTAATCTCTCTATAAC---AATCTGTCTAGATAATTTCACTGAAGAAATGAATGGAGGAGGGTGTCTGTAGATAAAGGTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29231237 141 + 173848474 TAAATATTTCTAACAAAAGTATTTTGTGACGAATCCAAGAGAGATTTGAAAGCATGACATTCTTAATCTCTCTATAAC---AATCTGTCTAGATAATTTCACTGAAGAAATGAATGGAGGAGGGTGTCTGTAGATAAAGGTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5022033 141 +   6154872 TAAATATTTCTAACAAAAGTATTTTGTTAGGAATCCAAGAGAGATTTGAAGGCATGACATTCTTAATCTCTCTATAAC---AATCTGTCTAGATAATTTCACTGAAGAAATGAATGGAGGAGGGTGTCTGTAGATAAAGGTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74024225 141 + 122973662 TAAATATTTCTAACAAAAGTATTTTGGGAGGAATCCAAGAGAGATTTGAAAGCATGACATTCTTAATCTCTCTATATC---AATCTGTCTAGATAATTTCACTGAAGAAATGAATGGAGGAGGGTGTCTGTAGATAAAGGCTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29167372 141 + 172585720 TAAACATTTCTAACAAAAGCATTTTGTAAGGAATCCAAGAGAAATTTGAAAGCATGATATTCTTAATCTCTCTATATC---AATCTGTCTAGATAATTTCACTGAAGAAATGGATGGGGGAGGGTGTCTGTAGATAAAGGCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28857401 141 - 170955103 TAAACATTTCTAACAAAAGCATTTTGTAAGGAATCCAAGAGAAATTTGAAAGCATGATATTCTTAATCTCTCTATATC---AATCTGTCTAGATAATTTCACTGAAGAAATGGATGGGGGAGGGTGTCTGTAGATAAAGGCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1829502 141 -   2996164 TAAACATTTCTAACAAAAGCATTTTGTAAGGAATCCAAGAGAAATTTGAAAGCATGATATTCTTAATCTCTCTATATC---AATCTGTCTAGATAATTTCACTGAAAAAATGGATGGGGGATGGTGTCTGTAGATAAAGGCTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1724716 141 -   2157725 TAAACATTTCTAACAAAAGCATTTTGTAAGGAATCCAAGAGAAATTTGAAAGCACGATATTCTTAATCTCTCTATATC---AATCTGTCTAGATAATTTCACTGAAGAAATGAATGGGGGACGGTGTCTGTAGATAAAGGCTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28173793 141 -  71996105 TAAACATTTCTAACAAAAGTATTTTGTGAGGAATCCAAGATAAATTTGAAAGCATGATATTCTTAATCTCTCTATATC---AATCTGTCTAGATAATTTCATTGAAGAAATGGATGGGGGAGGGTGTCTGTAGATAAAGGCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1819253 141 +   2316924 TAAACATTTCTAACAAAAGCATTTTGTAAGGAATCCAAGAGAAATTTGAAAGCACGATATTCTTAATCTCTCTATATC---AATCTGTCTAGATAATTTCACTGAAGAAATGAATGGGGGAGGGTGTCTGTAGATAAAGGCTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1708272 141 -   3067355 TAAACATTTCTAACAAAAGTATTTTGTGAGGAATACAAGAGAAATTTAAAAGCATGACATTCTTAATCTCTCTATATC---AGTCTGTCTAGATAATTTCACTAAAGAAATGGATGGAGGAGGGTGTCTGTAGATAAAGGCTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171305301 144 - 171630274 TGAATATTTCTAACAACAGTATTTTGTGAGGAATCCAAGACAGATTTGAAAGCATGACATTCTTAATCTCGCTACATCGATAATATGTCTAGATAATTTCACTGAGGAAATGAATGGAGGAGGGTGTCTGTACACAAAGGCTTC
i calJac3.chr4             I 310 C 0
s saiBol1.JH378348            124107 144 -    375362 TGAATATTTCTAATGAAAGTATTTTGTGAGGAATCCAAGACAGATTTGAAAGCATGACATTCTTAATCTCTCTACATAGATAATATGTCTAGATAATTTCACTGAGGAAATGGATGGAGGAGGGTGTCTGTACACAAAGGCTTC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      127286 144 -    373274 TGAATATTTCTAACAAAAGTATTTTGTGAGGAATCCAAGACAGATTTGAAACCATGACATTCTTAATCTCTCTGCATCGATAATATGTCTAGATAATTTCGCTGAGGAAATGGTTGGAGGAGGGTGTCTGTACACAAAGGCTTC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       74305 144 -    285216 TGAATATTTCTAACAAAAGTATTTTGTGAGGAATCCAAGACAGATTTGAAAGCATGACATTCTGAATCTCTCTACATCGATAATATGTCTAGATAATTTTACTGCGGAAATGAATGGAGGAGGGTGTCTGCACACAAAGGCTTC
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1468624 119 -   2232465 I

a score=1497623.000000
s hg38.chr6_GL000254v2_alt     10635 146 +   4827813 TATAATTGAGATTTG-AAAAAAATAGAATTTATTTATTTGTTTAGATGAAACCAGACAACTTTCCAAGCCCTGAATCAAATTGGGGGATGTATTGCACCTTTAGACAAAGAATCTCCCAATGTAGCTACT---TTAGCCATTTTACAAAA
s panTro5.chr6              28987680 147 + 175400573 TATAATTGAGATTTGAAAAAAAATAGAATTTATTTATTTGTTTAGATGAAACCAGACAACTTTCCAAGCCCTGAATCAAATTGGGGGATGTATTACACCTTTAGACAAAGAATCTCCCAATGTAGCTACT---TTAGCCATTTTACAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29231378 147 + 173848474 TATAATTGAGATTTGAAAAAAAATAGAATTTATTTATTTGTTTAGATGAAACCAGACAACTTTCCAAGCCCTGAATCAAATTGGGGGATGTATTACACCTTTAGACAAAGAATCTCCCAATGTAGCTACT---TTAGCCATTTTACAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5022174 146 +   6154872 TATAATTGAGATTTG-AAAAAAATAGAATTTATTTATTTGTTTAGATGAAACCAGACAACTTTCCAAGCCCTGAATCAAATTGGGGGATGTATCACACCTTTAGACAAAGAATCTCCCAATGTAGTTACT---TTAACCATTTTACAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74024366 145 + 122973662 TATAATTGGGATTTG--AAAAAATAGAATTTATTTATTTATTTAGATGAAACCAGACAACTTTCCAAGCCCTGAATCAAATTGGGGGATGTATTAGACCTTTAGACAAAGAATCTCCCAATGTAGCTACT---TTAGCCATTTTACAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29167513 146 + 172585720 TATAATTGAGCTTTT-AAAAAAATAGCATTTATTGATTTATTTAGATGAAACCAGACAATCTGCCAAGCCCCGAATCAAATTGGGGGATGTATTAGACCTTTAGACAAAGAATCTCCCAATGTAGCTACT---TTAGCCATTTTACAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28857542 146 - 170955103 TATAATTGAGCTTTT-AAAAAAATAGCATTTATTGATTTATTTAGATGAAACCAGACAATCTGCCAAGCCCCGAATCAAATTGGGGGATGTATTAGACCTTTAGACAAAGAATCTCCCAATGTAGCTACT---TTAGCCATTTTACAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1829643 146 -   2996164 TATAATTGAGCTTTT-AAAAAAATAGCATTTATTGATTTATTTAGATGAAACCAGACAATCTGCCAAGCCCCGAATCAAATTGGGGGATGTATTAGACCTTTAGACAAAGAATCTCCCAATGTAGCTACT---TTAGCCATTTTACAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1724857 146 -   2157725 TATAATTGAGCTTTT-AAAAAAATAGCATTTATTGATTTATTTAGATGAAACCAGACAATCTGCCAAGCCCCGAATCAAATTGGGGGATGTATTAGACCTTTAGACAAAGAATCTCCCAATGTAGCTACT---TTAGCCATTTTACAAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28173934 146 -  71996105 TATAATTGAGCTTTT-AAAAAAATAGCATTTATTGATTTATTTAGATGAAACCAGACAATCTGCCAAGCCCTGAATCAAATTGGGGGATATATTAGACCTTTAGACAAAGAATCTCCCAATGTAGCTACT---TTAGCCATTTTACAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1819394 146 +   2316924 TATAATTGAGCTTTT-AAAAAAATAGCATTTATTGATTTATTTAGATGAAACCAGACAATCTGCCAAGCCCCGAATCAAATTGGGGGATGTATTAGACCTTTAGACAAAGAATCTCCCAATGTAGCTACT---TTAGCCATTTTACAAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1708413 146 -   3067355 TATAATTGAGCTTTT-AAAAAAATAGAGTTTATTGATTTATTTAGATGAACCCAGACAATCTGCCAAGCTCTGAATCAAATTGGGGGATGTATTAGACCTTTAGACAAAGAATCTCCCAATGTAACTACT---TTAGCCATTTTACAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171305445 147 - 171630274 CATAATTGAGCTTTG--AAAAAATAGCA-GTATTTACTTATTTAGATGAAACCAGACAATCTGCCAAGACCTGAATCAAATTGGTGGATGTATTAGACCTTTAAAGAAAGAATCTCCCAATGTAGCTACTTTATTAGGCATTTTACAAAA
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            124251 144 -    375362 TATAATGGAGCTTTA--AAAAAATAGCA-GTATTTACTTATTTAGATGAAACCAGACAATCTGCCAAGCCCTGAATCAAACTGGTGGATGTATCAGACCTTTAGGGAAAGAATCTCCCAATGTAGCTGCT---GTAGCCATTTTACAAAA
i saiBol1.JH378348         C 0 I 1
s cebCap1.NW_016108108v1      127430 143 -    373274 TATAATTGAGCTTTG--AAAAAACAGCA-GTATTTACTTATTTAGATGAAACCAGACAATCTGCCAAGCCCTGAATCAAATTGGTGGATGTATTAGA-CTTTAGAGAAAGAATCTCCCAATGTAGCTACT---TTAGCCATTTTACAAAA
i cebCap1.NW_016108108v1   C 0 I 1
s aotNan1.NW_018494050v1       74449 145 -    285216 TATAATTGAGCTTTG-AAAAAAAAAGCA-GTATTTACTTATTTAGATGAAACCAGACAATCTGCCAAGCCCTGAATCAAATTGGTGGATGTATTAGACCTTTAGAGAAAGAATCTCCCACTGTAGCTACT---TTAGCCGTTTTACAAaa
i aotNan1.NW_018494050v1   C 0 I 595
s otoGar3.GL873742           1468743 145 -   2232465 TGTAATTAAATTTTG--AAGGAATAGTATTCATTCATTCATTCTGACTCAACCAGATAACTTGCCAAGCCTTGGGTCAAACTGGGAGATGTTTTAGACCTTCAGACAAAGAATCTTCCAATTTACCTGTT---TCAGACACTTTACAAAA
i otoGar3.GL873742         I 119 C 0

a score=1430177.000000
s hg38.chr6_GL000254v2_alt     10781 150 +   4827813 ACCCATAATGCATGACCCTAATAATGTTCTTAACTTTAGAATTTGGAAAACTCAGCATTTCCTGTGAGGTGTGATCCAGTGTACA--ACAAACGTTCACTCACACACACAGAAAGAAC-TAAGATTTGCAGCACTTATGGTCTGGTTATTGAC
s panTro5.chr6              28987827 152 + 175400573 ACCCATAATGCATGACCCTAATTATCTTCTTAACTTTAGAATTTGGAAAACTCAGCATTTCCTGTGAGGTGTGATCCAGTGTACAACACAAACGTTCACTCACACACACAGAAAGAAC-TAAGATTTGCAGCACTTATGGTCTGGTTATTGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29231525 152 + 173848474 ACCCATAATGCATGACCCTAATTATCTTCTTAACTTTAGAATTTGGAAAACTCAGCATTTCCTGTGAGGTGTGATCCAGTGTACAACACAAACATTCACTCACACACACAGAAAGAAC-TAAGATTTGCAGCACTTATGGTCTGGTTATTGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5022320 150 +   6154872 ACCCATAATGCATGACCCTAATAATCTTCTTAACTTTAGAATTTGGAAAACTCAGCATTTCCTGTGAGGTGTGATCCAGTGTACA--ACAAACGTTCACTCACACACACAGAAAGAAC-TAAGATTTGCAGCACTTATGGTTTGGTTATTGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74024511 150 + 122973662 ACCCATAATGCATGACCCTAATAATCTTCTTAACTTTAGAATTTGGAAAACTCAGCATTTCCTGTGAGGTGTGATCCAGTGTACA--ACAAACGTTCACTCACACACACAGAAAGAAC-TAAGATTTGCAGCACTTATGGTCTGGTTATTGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29167659 149 + 172585720 ACTCATAATGCATGACCCTAGTAATCTTCTTAAC-TTAGAATTTGGAAAACTCAGCATTTCCTGTGAGGTGTGATCCAGTGTACA--ACAAACGTTCACTCACACACACAGAAAGAAC-TAAGATTTGCAGCCTTTATGGTTTGGTTATTGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28857688 149 - 170955103 ACTCATAATGCATGACCCTAGTAATCTTCTTAAC-TTAGAATTTGGAAAACTCAGCATTTCCTGTGAGGTGTGATCCAGTGTACA--ACAAACGTTCACTCACACACACAGAAAGAAC-TAAGATTTGCAGCCTTTATGGTTTGGTTATTGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1829789 149 -   2996164 ACTCATAATGCATGACCCTAGTAATCTTCTTAAC-TTAGAATTTGGAAAACTCAGCATTTCCTGTGAGGTGTGATCCAGTGTACA--ACAAACGTTCACTCACACACACAGAAAGAAC-TAAGATTTGCAGCCTTTATGGTTTGGTTATTGAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1725003 149 -   2157725 ACTCATAATGCATGACCCTAGTAATCTTCTTAAC-TTAGAATTTGGAAAACTCAGCATTTCCTGTGAGGTGTGATCCAGTGTACA--ACAAACGTTCACTCACACACACAGAAAGAAC-TAAGATTTGCAGCCTTTATGGTTTGGTTATTGAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28174080 149 -  71996105 ACCCATAATGCATGACCCTAGTAATCTTCTTAAG-TTAGAATTTGGAAAACTCAGCATTTCCTGTGAGGTGTGATCCAGTGTACA--ACAAACGTTCACTCACACACACAGAAAGAAC-TAAGATTTGCAGCCTTTATGGTTTGGTTATTGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1819540 149 +   2316924 ACTCATAATGCATGACCCTAGTAATCTTCTTAAC-TTAGAATTTGGAAAACTCAGCATTTCCTGTGAGGTGTGATCCAGTGTACA--ACAAACGTTCACTCACACACACAGAAAGAAC-TAAGATTTGCAGCCTTTATGGTTTGGTTATTGAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1708559 149 -   3067355 ATCCATAATGCATGACCCTAGTAATCTTCTTAAC-TTAGAATTTGGAAAACTCAGCATTTTCTGTGAGGTGTGATCCAGTGTACA--ACAAACGTTCACTCACACACACAGAAAGAAC-TAAGATTTGCAGCCTTTATGGTTTAGTTATTGAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171305593 150 - 171630274 ACCCAAAATGCATTACCCTAATAATCTTCATAACTTTAGAATTTGGAAAACGCAGCATTTCCTGTAAGGTGTGATCCAGTGTGCA--GCAAGCATTCACTCACACACACAGAAAGAAT-TAAGATCTGCAGCCCTTACGGTCTGGTTATTGAC
i calJac3.chr4             I 1 C 0
s saiBol1.JH378348            124396 150 -    375362 ACCCAAAATGCATTACCCTAATAATCTTCTTAACTTTAGAATTTGGAAAACACAGCATTTCCTGTAAGGTGTGATCCAGTGTACA--GCAAGCATTCACTCACACACACGGAAATTAT-TACGATCTGCAGCCCTTATGGTCTGGTTATTGAC
i saiBol1.JH378348         I 1 C 0
s cebCap1.NW_016108108v1      127574 150 -    373274 ACCCAAAATGCATTACACTAATAATCTTCTTAACTTTAGAATTTGGAAAACTCAGCATTTCCCGTAAGGTGTGATCCAGTGTACA--GCAAGCATTCACTCACATACACAGAAAGAAT-TAAGATCTGCAGTCCTTATGGTCTGGTTATTGAC
i cebCap1.NW_016108108v1   I 1 C 0
s otoGar3.GL873742           1468888 142 -   2232465 ACCCATAGTACATGATCCTAATAATCTTCTAACCTTTAGAATTTGGAAAGCACAACATTTCCCATGAGGTGTGACT-----------GCAAATATTTACTCATTCATACAGAAAGAACTTGAGATCTGTAGTCCTCATAGTCTAGTTATTGGC
i otoGar3.GL873742         C 0 I 516
e aotNan1.NW_018494050v1       74594 595 -    285216 I

a score=1025455.000000
s hg38.chr6_GL000254v2_alt     10931 158 +   4827813 CTGAC------gtgtgt----gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtTGGGGA-TGGGGGCTACTGTGAAAGGAAAGGATAAAGAAAACTCAGCCAAGTAAAGATTTTCTACTCACATATCTATTTACCATTCTtttgtctatat
s panTro5.chr6              28987979 138 + 175400573 CTGAC------gtgtgt----gtgtgtgtgtgtgtgtg--------------------tgtgtgtgtgtgtTGGCTA-TGGGGGCTACTGTGAAAGGAAAGGATAAAGAAAACTCAGCCAAGTAAAGATTTTCTACTCACATATCTATTTACCATTCTTTTGTCTATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29231677 142 + 173848474 CTGAt------gtgtgt----gtgtgtgtgtgtgtgtgtgtg----------------tgtgtgtgtgtgtTGGCGA-TGGGGGCTACTGTGAAAGGAAAGGATAAAGAAAACTCAGCCAAGTAAAGATTTTCTACTCACATATCTATTTACCATTCTtttgtctatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5022470 132 +   6154872 CTGAC------gtgtgt----gtgtgtgtgtg--------------------------tgtgcgtatgtgtTGGGGA-TGGGGGCTACTGTGAAAGGAAAGGATAAAGAAAACTCAGCCAAGTAAAGATTTTCTACTCACTTATCTATTTACCGTTCTtttgtctatat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74024661 133 + 122973662 CTGAC------ATAtgt----gtgtgtgtgtgtg------------------------tgtgtgtgtgtgtTGGGGA-TGGGGGCTACTGTGAAAGAAAAGGATAAAGAAAACTCAG-CAAGTAAAGATTTTCTACTCACATATCTATTTACCATTCTTTTGTCtatac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29167808 140 + 172585720 CTGAC------GTTtgt----gtgtgtgtgtgtgtgtgtgtg----------------tgtgtgtgtgtgtTGGGG--TGGGGGCTACTGTGAAAGGAAAGGATAAAGAAAACTCAG-CCAATAAAGGTTTTCTACTCATATATCTATTTGCCATTCTTTTGTCTATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28857837 140 - 170955103 CTGAG------gtgtgt----gtgtgtgtgtgtgtgtgtgtg----------------tgtgtgtgtgtgtTGGGG--TGGGGGCTACTGTGAAAGGAAAGGATAAAGAAAACTCAG-CCAATAAAGGTTTTCTATTCATATATCTATTTGCCATTCTTTTGTCTATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1829938 140 -   2996164 CTGAC------gtgtgt----gtgtgtctgtgtgtgtgtgtg----------------tgtgtgtgtgtgtTGGGG--TGGGGGCTACTGTGAAAGGAAAGGATAAAGAAAACTCAG-CCAATAAAGGTTTTCTACTCATATATCTATTTGCCATTCTTTTGTCTATAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1725152 136 -   2157725 CTGAC------gtgtgt----gtg----tgtgtgtgtgtgtg----------------tgtgtgtgtgtgtTGGGG--TGGGGGCTACTGTGAAAGGAAAGGATAAAGAAAACTCAG-CGAATTAAGGTTTTCTACTCATATATCTATTTGCCATTCTTTTGTCTATAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28174229 134 -  71996105 CTGAC----------------gtgtgtgtgtgtgtgtgtgtg----------------tgtgtgtgtgtgtTGGGG--TGGGGACTACTGTGAAAGGAAAGGATAAAGAAAACTCAG-CGAATAAAGGTTTTCTACTCATATATCTATTTGCCATTCTTTTGTCTATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1819689 146 +   2316924 CTGACgtgtgtgtgtgt----gtgtgtgtgtgtgtgtgtgtg----------------tgtgtgtgtgtgtTGGGG--TGGGGGCTACTGTGAAAGGAAAGGGTAAAGAAAACTCAG-CGAATTAAGGTTTTCTACTCATATATCTATTTGCCATTCTTTTGTCTATAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1708708 143 -   3067355 CTGAC---TTGACgtgt----gtgtgtgtgtgtgtgtgtgtg----------------tatgtgtgtgtgtTGGTG--TGGGGGCTACTGTGAAAGGAAAGGATAAAGAAAACTCAG-CGAATAAAGGTTTTCTACTCATATATCTATCTGCCATTCTTTTGTCTATAT
i colAng1.NW_012115566v1   C 0 I 480
s calJac3.chr4             171305743 134 - 171630274 CTGAC----------------gtgtgcgtgtgtgtgtgcgtg----------------tgtgtgtgtgtgtTGGGGAGTGGGGCTTATACTGAAAGGAAGAGATAAAGAAAACTCAC-TGAATAAAGGTTTTCTATTCATATATCGGTTTTCCATTCTTTTGTCTAT--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            124546 141 -    375362 CTGAC------gtgtgt--gtgtgtgtgtgtgtgtgtgtgtg----------------tgtgtgtgtgtgtTGGGGAGTGGGGGTTATACTGGAAGG-AGGGATAAAGAAAACTCAG-TGAATAAAGGTTTTCTACTCATATATCTATTTTCCATTCTTTTGTCTAT--
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      127724 144 -    373274 CTGAC------gtgtgtgcgtgcgtgtgtgtgtgtgtgtgtg----------------tgtgtgtgtgtgtTGGGGAGTGGGGGTTATACTGAAAGGAAGGGATAAAGAAAACTCAG-TGAATAAAGGTCTTCTACTCATATATCTATTTTCCATGCTTTTGTCTac--
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1469030 516 -   2232465 I
e aotNan1.NW_018494050v1       74594 595 -    285216 I

a score=197534.000000
s hg38.chr6_GL000254v2_alt     11089 55 +   4827813 gtcttttaaaagaagacatacaaatggcaa----atatatgaaaaggtgctcaacacca
s panTro5.chr6              28988117 55 + 175400573 GTCttttaaaagaagacatacaaatggcaa----atatatgaaaaggtgctcaacacca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29231819 55 + 173848474 gtcttttaaaagaagacatacaaatggcaa----atatatgaaaaggtgctcaacacca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5022602 55 +   6154872 gtcttttaaaagaagacatacaaatggcaa----atatatgaaaaggtgctcaacacca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74024794 55 + 122973662 gtcttttaaaagaagacataaaaatggcaa----atatatgaaaaggtgctcaacatca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29167948 28 + 172585720 GTCTTTTAAAAGAAGACATAGAAATGTC-------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28857977 28 - 170955103 GTCTTTTAAAAGAAGACATACAAATGTC-------------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1830078 28 -   2996164 GTCTTTTAAAAGAAGACATACAAATGTC-------------------------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1725288 28 -   2157725 GTCTTTTAAAAGAAGACATACAAATGTC-------------------------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28174363 28 -  71996105 GTCTTTTAAAAGAAGACATACAAATGTC-------------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1819835 28 +   2316924 GTCTTTTAAAAGAAGACATACAAATGTC-------------------------------
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171305877 59 - 171630274 Gtctttcagaataagacatacaaatggcaaacagatatgtgaaaaggtgctcaacacca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            124687 59 -    375362 Gtctttcagaataagacatacaaatggcaaatagatatgtgaaaaggtgctcaacacca
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      127868 59 -    373274 gtctttcagaataagacatacaaatggcaaacagatatgtgaaaaggtgctcaacacca
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1469030 516 -   2232465 I
e aotNan1.NW_018494050v1       74594 595 -    285216 I
e colAng1.NW_012115566v1     1708851 480 -   3067355 I

a score=3780041.000000
s hg38.chr6_GL000254v2_alt     11144 450 +   4827813 ttgatcatcaaataaatgcaaatcaaaactaaaatgaaatgttatctcacccaagttaaaatgactttcatccaaaagacaggcaaggacgtggagaaaggagaaccctagtacactcttggtgggaatttaaattagtacaaccgctttggagaatagtatggaggttcctcagaaaactaaaaatattaccatatattccagcaatccccctattaggcctatacccaaaagaaaggaaattagtatatcgaaaagatatctacactgtcatctttattgcagcactattcacaatagccaagattgggaagcatcctaagtacccatcaac----agataaatgaataaagtaaatgtggtacgtatacacaacggggtactattcggccatgaaaagaatgaggtcttgtcatttgcaaagcggatggaactatgttctgtgcgggaaat
s panTro5.chr6              28988172 450 + 175400573 ttgatcatcaaataaatgcaaatcaaaactaaaatgaaatgttatctcacccaagttaaaatgactttcatccaaaagacaggcaaggacgtggagaaaggagaaccctagtacactcttggtgggaatttaaattagtacaaccgctttggagaatagtatggaggttcctcagaaaactaaaaatattaccatatattccagcaatcccgctattaggcctatacccaaaagaaaggaaattagtatatcgaaaagatatctacactgtcatctttattgcagcactattcacaatagccaagattgggaagcatcctaagtacccatcaac----agataaatgaataaagtaaatgtggtacgtatacacaacggggtactattcggccatgaaaagaatgaggtcttgtcatttgcaaagtggatggaactatgttctgtgcgggaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29231874 450 + 173848474 ttgatcatcaaataaatgcaaatcaaaactaaaatgaaatgttatctcacccaagttaaaatgactttcatccaaaagacaggcaaggacgtggagaaaggagaaccctagtacacacttggtgggaatttaaattagtacaaccgctttggagaatagtatggaggttcctcagaaaactaaaaatattaccatatattccagcaatcccgctattaggcctatacccaaaagaaaggaaattagtatatcgaaaagatatctacactgtcatctttattgcagcactattcacaatagccaagattgggaagcatcctaagtacccatcaac----agataaatgaataaagtaaatgtggtacgtatacacaacggggtactattcggccatgaaaagaatgaggtcttgtcatttgcaaagtggatggaactatgttctgtgcgggaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5022657 453 +   6154872 ctgatcatcaaataaatgcaaatcaaaactaaaatgaaatgttatctcacccaagttaaaacgactttcatccaaaagacaggcaaggacgtggagaaaggagaaccctagtacactcttggtgggaatttaaattagtacaaccgctttggagaatagtatggaggttcctcagaaaactaaaaatattaccatatattccagcaatccc-ctattaggcctatacccaaaagaaaggaaattagtatatcgaaaagatatctacactgtcatctttattgcagcacgattcacaatagccaagattgggaagcatcctaagtgcccatcaacagatagataaatgaataaagtaaatgtggtacgtatacacaacggggtaccatttggccatgaaaagaatgaggtcttgtcatttgcaaagtggatggaactatgttctgtgcgggaaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74024849 449 + 122973662 ttgatcatcgaataaatgcaaatcaaaactaaaataaaatattatctcacccaagctaaaatgactttcatccaaaagacaggcaatgacgtggagaaagaagaaccctagtacactcttggt-ggaatgtaaattagtacaaccgctttggagaatagtatggaggttcctcagaaaactaaaaatattaccatatattccagcaatccccctgttaggcatataccccaaagaaaggaaattcgtatatcaaaaatatatctacactgtcatctttattgcagcactattcacaatagccaagattgggaagcatcctaagcgcccatcaac----agataaatgaataaagtaaatgtggtacgtatacacaacggggtactattcagccatgaaaagaatgagatcttgtcatttacaaagtggatggaactatgttctgtgcgggaaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29167976 449 + 172585720 Ttgatcatcaaataaatgcaaatcaaaactaaaatgaaatattatctcacccaagttaaaatgactttcatacaaaagacaggcaaggatgtgaagaaaggagaaccctagtacactcttggtgggaatataaattagtacaaccactgtggagaacagtatggaggctcctcagaaaactaaaaatattaccatatattccaacaatccccctgctaggtatatacccaaaagaaagtaaattagtatatcaaagagatatgtgcactctcatctttattgcagcactattcataatagccaagattgggaagcatcctaagtgcctgtcaac----agataaatgaataaagt-aatgttgtacatatacacaacggggtgctattcagccatgaaaagaatgagatcttgtcatttgcaaagcggatggaactatgctctgtgcaggaaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28858005 448 - 170955103 Ttgatcatcaaataaatgcaaatcaaaactaaaatgaaatattatctcacccaagttaaaatgactttcatacaaaagacaggcaaggatgtgaagaaaggagaaccctagtacactctt-gtgggaatataaattagtacaaccactgtggagaacagtatggaggctcctcagaaaactaaaaatattaccatatattccaacaatccccctgctaggtatatatccaaaagaaagtaaattagtatatcaaagagatatgtgcactctcatctttattgcagcactattcacaatagccaagattgggaagcatcctaagtgcctgtcaac----agataaatgaataaagt-aatgttgtacatatacacaacggggtgctattcagccatgaaaagaatgagatcttgtcatttgcaaagcggatggaactatgctctgtgcaggaaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1830106 449 -   2996164 Ttgatcatcaaataaatgcaaatcaaaactaaaatgaaatattatctcacccaagttaaaatgactttcatacaaaagacaggcaaggatgtgaagaaaggagaaccctagtacactcttggtgggaatataaattagtacaaccactgtggagaacagtatggaggctcctcagaaaactaaaaatattaccatatattccaacaatccccctgctaggtatatacccaaaagaaagtaaattagtatatcaaagagatatgtgcactctcatctttattgcagcactattcacaatagccaagattgggaagcatcctaagtgcctgtcaac----agataaatgaataaagt-aatgttgtacatatacacaacggggtgctattcagccatgaaaagaatgagatcttgtcatttgcgaagtggatggaactatgctctgtgcaggaaac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1725316 449 -   2157725 Ttgatcatcaaataaatgcaaatcaaaactaaaatgaaatattatctcacccaagttaaaatgactttcatacaaaagacaggcaaggatgtgaagaaaggagaaccctagtacactcttggtgggaatataaattagtacaaccactgtggagaacagtatggaggctcctcagaaaactaaaaatattaccatatagtccagcaatccccctgctaggtatatacccaaaagaaagtaaattagtatatcaaagagatatgtgcactctcatctttattgcagcactattcacaatagccaagattgggaagcatcctaagtgcccatcaac----agataaatgaataaagt-aatgttgtacatatacacaacggggtgttattcagccatgaaaagaatgagatcttgtcatttgcaaagtgaatggaactatgctctgtgcaggaaac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28174391 449 -  71996105 Ttgatcatcaaataaatgcaaatcaaaactaaaatgaaatattatctcacccaagttaaaattagtttcatacaaaagacagacaaggatatgaagaaagaagaaccctagtacactcttgatgggaatataaattagtacaactactgtggagaacagtatggaggttcctcaggaaactaaaaatactaccatatattccagcaatccccctgctaagcatatacccaaaagaaagtaaattagtgtatcaaagagatatgtgcactctcatctttactgcagcactattcacaatagccaagattgggaagcatcctaagtgcccgtcaac----agataaatgaataaagt-aatgttgtacatatacacaacggggtgctattcagccatgaaaagaatgagatcttgtcatttgcaaagtggatggaactatgctctgtgcaggaaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1819863 449 +   2316924 Ttgatcatcaaataaatgcaaatcaaaactaaaatgaaatattatctcacccaagttaaaatgactttcatacaaaagacaggcaaggatgtgaagaaaggagaaccctagtacactcttggtgggaatataaattagtacaaccactgtggagaacagtatggaggctcctcagaaaactaaaaatattaccatatagtccagcaatccccctgctaggtatatacccaaaagaaagtaaattagtatatcaaagagatatgtgcactctcatctttattgcagcactattcacaatagccaagattgggaagcatcctaagtgcccatcaac----agataaatgaataaagt-aatgttgtacatatacacaacggggtgctattcagccatgaaaagaatgagatcttgtcatttgcaaagtgagtggaactatgctctgtgcaggaaac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1709331 449 -   3067355 Ttgatcatcaaataaatgcaaatcaaaactaaaatgaaatattatctcacccaagttaaaatgacttttatacaaaagacaggcaaggatgtgaagaaaggagaaccctagtacactcttggtgggaatataaattagaacaaccactgtggagaacagtatggaggttcctcagaaaactaaaaatattaccatatattgcagcaatccccctgctagatatatacccaaaagaaagtaaattagtatatcaaagagatatgtgcactctcatctttattgcagcactattcacaatagccaagattgggaagcatcctaagtgcccgtcaac----agataaatgaacaaagt-gacgttgtacatatacacaacggggtgctattcagccatgaaaagaatgagatcttgtcatttgcaaagtggatggaactatgctctgtgcaggaaat
i colAng1.NW_012115566v1   I 480 C 0
s calJac3.chr4             171305936 438 - 171630274 ttgctcatcaaataagtgcgaatcaaaattaaaatgaaatattatctcacccaagttaaaatgactttcatccaaaagacagacaagaatgtggagaaaggggaaccccagtatcctcttggtgggaatgtaaattagcacaactgccgtggagaacagtatagaggttgctcagaaaactaaaaattgtaccgtattatccagcaa--cccctgctaggcatatactcaaaagaaaggaaatcagtatatcaaagagacatctgcactctggtgtttcctgcagcactattcgcaatagcca-------gaaaaatcctaagtgcccatcaac----agataaatgaataaagtaaatgtggta-atatacacaatggagtacta-tcagtcatg-aaagaatgagatcctgtcatttgctaagtcgatggaactACGTTCTGTGCGGGAAAT
i calJac3.chr4             C 0 I 5
s saiBol1.JH378348            124746 444 -    375362 tcgatcatcaaataaatgcaaatcaaaactaaaatgaaatatcatctcacccaagttaaaatgactttcttccaaaagacagat-aggatgtggagaaaggggaaccccagtccactctcggtgggaatgtaaattagtacaactgctgtggagaacagtatggaggttgctcagaaaactaaaaatagtaccgtattatccagcaa-ccccctgctaggcatgtactc----gaaaggaaatcagtatatcaaagagatatctgcactctcatgtttcctgcagcactattcacaatagccaagattgggaagaatcctaagtgcccatcaag----agataaatgaataaagtaaatgtggtacatatacgcaatggagtactattccatcatgaaaagaatgagatcctgtcatttgctaagtcaatggaactATGTTCTGTGTGGGAAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      127927 449 -    373274 ttgatcatcaattaaatgcaaatcaaaactaaaatgaaatattatctcacccaagttaaaatgactttcatccaaaagacagacaaggatgtggagaaaggggaaccctagtacactcttggtgggaatgtaaattagtacaactgctgtggcgaacagtatggaggttgctcagaaaactaaaaatagtgccatattatccagcaa-ccccctgctagccatatactcaaaagaaaggaaatcagtatatcaaagagacatctgcactctcatgtttcctgcagcactattcacaatagccaagattgggaagaatcctaagtgcccatcaac----agataaatgaataaagtaaatgtggtacatacacacaatggagtactattccgtcaggaaaagaatgagatcctgtcatttgctaagtcgatggaactATGTTCTGTGCGGGAAAT
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1469030 516 -   2232465 I
e aotNan1.NW_018494050v1       74594 595 -    285216 I

a score=2492.000000
s hg38.chr6_GL000254v2_alt     11594 1 +   4827813 g
s panTro5.chr6              28988622 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29232324 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5023110 1 +   6154872 g
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74025298 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29168425 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28858453 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1830555 1 -   2996164 a
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1725765 1 -   2157725 a
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28174840 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1820312 1 +   2316924 a
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1709780 1 -   3067355 a
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            125190 1 -    375362 G
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      128376 1 -    373274 G
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1469030 516 -   2232465 I
e aotNan1.NW_018494050v1       74594 595 -    285216 I
e calJac3.chr4             171306374 5 - 171630274 I

a score=6228.000000
s hg38.chr6_GL000254v2_alt     11595 1 +   4827813 c
s panTro5.chr6              28988623 1 + 175400573 c
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29232325 1 + 173848474 c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5023111 1 +   6154872 c
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74025299 1 + 122973662 c
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29168426 1 + 172585720 c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28858454 1 - 170955103 c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1830556 1 -   2996164 t
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1725766 1 -   2157725 c
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28174841 1 -  71996105 c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1820313 1 +   2316924 c
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1709781 1 -   3067355 c
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      128377 1 -    373274 C
i cebCap1.NW_016108108v1   C 0 I 333
e saiBol1.JH378348            125191 0 -    375362 C
e otoGar3.GL873742           1469030 516 -   2232465 I
e aotNan1.NW_018494050v1       74594 595 -    285216 I
e calJac3.chr4             171306374 5 - 171630274 I

a score=796339.000000
s hg38.chr6_GL000254v2_alt     11596 145 +   4827813 gagaggggagaagaaaagacacacacacaatacctttaagggtaaataacctttatcccacgtaaacggcaatgcagatataataaacaaatgatacaataagcaaattgcaatgggaaggggagaagggaaaagatatatatat
s panTro5.chr6              28988624 145 + 175400573 gagaggggagaagaaaagacacacacacaatacctttaagggtaaataacctttatcccacgtaaacggcaatgcagatataataaacaaatgatacaataagcaaattgcaatgggaaggggagaagggaaaagatatatatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29232326 145 + 173848474 gagaggggagaagaaaagacacacacacaatacctttaagggtaaataacctttatcccacgtaaacggcaatgcagatataataaacaaatgatacaataagcaaattgcaatgggaaggggagaagggaaaagatatatatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5023112 145 +   6154872 gagaggggagaagaaaagacacacacacaatacctttaagggtaaataacttttatcccacgtaaatggcaatgcagatataataaacgaacgatacaataagcaaattgcaatgggaaggggagaagggaaaagatatatatat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74025300 141 + 122973662 gagaggggagaagaaaagacacacacacaatacctttaagggtaaataacatttatcccacgtaaatggcaatgcagatataataaacaaatgatataataagcaaattgcaatgggaaggggagaaaggaaaagatatat----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29168427 145 + 172585720 gagaggggagaagaaaagacatacacacaatacctttaagggtaaataacatttatcccacataaatggcaacgcagatataataaacaaatgatataataagcaaattgcaatgggaaggggagaagagaaaagatatatatat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28858455 145 - 170955103 gagaggggagaagaaaagacatacacacaatacctttaagggtaaataacatttatcccacataaatggcaacgcagatattataaacaaatgatataataagcaaattgcaatgggaaggggagaagagaaaagatatatatat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1830557 145 -   2996164 gagaggggagaagaaaagacatacacacaatacctttaagggtaaataacatttatcccacataaatggcaacgcagatgtaataaacaaatgatataataagcaaattgcaatgggaaggggagaagagaaaagatatatatat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1725767 129 -   2157725 gagaggggagaagaaaagacatacacacagtacctttaagggtaaataacatttatcccacataaatggcaatgca----------------gatataataagcaaattgcaatgggaaggggagaagagaaaagatatatatat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28174842 140 -  71996105 gagaggggagaagaaaagacatacacataatacctttaagggtaaataacatttatcccacataaatggcaacgcagatataataaacaaatgatataataagcaaattgcaatggga-----agcagagaaaagatatatatat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1820314 145 +   2316924 gagaggggagaagaaaagacatacacacagtacctttaagggtaaacaaactttatcccacataaatggcaatgcagatataataagcaaatgatataataagcaaattgcaatgggaaggggagaagagaaaagatatatatat
i manLeu1.NW_012104165v1   C 0 I 264
s colAng1.NW_012115566v1     1709782 145 -   3067355 gagaggggagaagaaaagacatacacccaatacctttaagagtaaataacatttatcccacataaatggcaacgcagatataataagcaaatgatacaataagcaaattgcaatgggaaggggagaagagaaaagatatatatat
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            125191   0 -    375362 C
e otoGar3.GL873742           1469030 516 -   2232465 I
e aotNan1.NW_018494050v1       74594 595 -    285216 I
e cebCap1.NW_016108108v1      128378 333 -    373274 I
e calJac3.chr4             171306374   5 - 171630274 I

a score=18142.000000
s hg38.chr6_GL000254v2_alt     11741 7 +   4827813 atatata
s panTro5.chr6              28988769 7 + 175400573 atatata
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29232471 7 + 173848474 atatata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5023257 6 +   6154872 atacac-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29168572 7 + 172585720 gtatata
i rheMac8.chr4             C 0 I 60
s macFas5.chr4              28858600 7 - 170955103 gtatata
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1     1830702 7 -   2996164 gtatata
i macNem1.NW_012011356v1   C 0 I 60
s cerAty1.NW_012001495v1     1725896 7 -   2157725 gtatata
i cerAty1.NW_012001495v1   C 0 I 59
s chlSab2.chr17             28174982 7 -  71996105 gtataca
i chlSab2.chr17            C 0 I 65
s colAng1.NW_012115566v1     1709927 7 -   3067355 gtatata
i colAng1.NW_012115566v1   C 0 I 59
e saiBol1.JH378348            125191 0 -    375362 C
e otoGar3.GL873742           1469030 516 -   2232465 I
e aotNan1.NW_018494050v1       74594 595 -    285216 I
e cebCap1.NW_016108108v1      128378 333 -    373274 I
e calJac3.chr4             171306374 5 - 171630274 I
e manLeu1.NW_012104165v1     1820459 264 +   2316924 I
e nomLeu3.chr1a             74025441 0 + 122973662 C

a score=2735.000000
s hg38.chr6_GL000254v2_alt     11748 14 +   4827813 tatacacacactca
s panTro5.chr6              28988776 10 + 175400573 t----acacactca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29232478 12 + 173848474 tat--acacactca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5023263  9 +   6154872 -----acacactca
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28858610 10 - 170955103 ----aatatatgta
i macFas5.chr4             I 3 C 0
e saiBol1.JH378348            125191  0 -    375362 C
e otoGar3.GL873742           1469030 516 -   2232465 I
e aotNan1.NW_018494050v1       74594 595 -    285216 I
e cebCap1.NW_016108108v1      128378 333 -    373274 I
e calJac3.chr4             171306374  5 - 171630274 I
e colAng1.NW_012115566v1     1709934 59 -   3067355 I
e manLeu1.NW_012104165v1     1820459 264 +   2316924 I
e chlSab2.chr17             28174989 65 -  71996105 I
e cerAty1.NW_012001495v1     1725903 59 -   2157725 I
e macNem1.NW_012011356v1     1830709 60 -   2996164 I
e rheMac8.chr4              29168579 60 + 172585720 I
e nomLeu3.chr1a             74025441  0 + 122973662 C

a score=1792.000000
s hg38.chr6_GL000254v2_alt     11762 4 +   4827813 ccaa
s panTro5.chr6              28988786 4 + 175400573 ccaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29232490 4 + 173848474 ccaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5023272 4 +   6154872 ccaa
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28858620 4 - 170955103 tata
i macFas5.chr4             C 0 C 0
s saiBol1.JH378348            125191 4 -    375362 CTAG
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1469030 516 -   2232465 I
e aotNan1.NW_018494050v1       74594 595 -    285216 I
e cebCap1.NW_016108108v1      128378 333 -    373274 I
e calJac3.chr4             171306374 5 - 171630274 I
e colAng1.NW_012115566v1     1709934 59 -   3067355 I
e manLeu1.NW_012104165v1     1820459 264 +   2316924 I
e chlSab2.chr17             28174989 65 -  71996105 I
e cerAty1.NW_012001495v1     1725903 59 -   2157725 I
e macNem1.NW_012011356v1     1830709 60 -   2996164 I
e rheMac8.chr4              29168579 60 + 172585720 I
e nomLeu3.chr1a             74025441 0 + 122973662 C

a score=40854.000000
s hg38.chr6_GL000254v2_alt     11766 51 +   4827813 atatatatatatatatataaatatatatatt---tatatatatgtac--actcaca
s panTro5.chr6              28988790 45 + 175400573 ------atatatatacataaatatatatatt---tatatatatgtac--actcacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29232494 45 + 173848474 ------atatatatacataaatatatatatt---tatatatatgtac--actcacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5023276 49 +   6154872 --atatatatatatatatatatatatatatt---tacatatatgtac--actcacc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74025441 17 + 122973662 -------------------------------------gtatatttac--actcacc
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28858624 48 - 170955103 ------gtatatatatatgcatgtatatagtgcgtgtgtgtgtgtat--atatatg
i macFas5.chr4             C 0 C 0
s calJac3.chr4             171306379 51 - 171630274 --acatatatatatatatatatatatatata---tatatatatatatCAactcacc
i calJac3.chr4             I 5 C 0
s saiBol1.JH378348            125195 46 -    375362 ------Gtatatagaaatatatatatatata---tatatTTTTttttc-actcacc
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1469030 516 -   2232465 I
e aotNan1.NW_018494050v1       74594 595 -    285216 I
e cebCap1.NW_016108108v1      128378 333 -    373274 I
e colAng1.NW_012115566v1     1709934 59 -   3067355 I
e manLeu1.NW_012104165v1     1820459 264 +   2316924 I
e chlSab2.chr17             28174989 65 -  71996105 I
e cerAty1.NW_012001495v1     1725903 59 -   2157725 I
e macNem1.NW_012011356v1     1830709 60 -   2996164 I
e rheMac8.chr4              29168579 60 + 172585720 I

a score=8343.000000
s hg38.chr6_GL000254v2_alt     11817 5 +   4827813 agact
s panTro5.chr6              28988835 5 + 175400573 agact
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29232539 5 + 173848474 agact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5023325 5 +   6154872 agact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74025458 5 + 122973662 agact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29168639 5 + 172585720 atatg
i rheMac8.chr4             I 60 C 0
s macNem1.NW_012011356v1     1830769 5 -   2996164 atatg
i macNem1.NW_012011356v1   I 60 C 0
s calJac3.chr4             171306430 5 - 171630274 agact
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            125241 5 -    375362 ggact
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1469030 516 -   2232465 I
e aotNan1.NW_018494050v1       74594 595 -    285216 I
e cebCap1.NW_016108108v1      128378 333 -    373274 I
e colAng1.NW_012115566v1     1709934 59 -   3067355 I
e manLeu1.NW_012104165v1     1820459 264 +   2316924 I
e chlSab2.chr17             28174989 65 -  71996105 I
e cerAty1.NW_012001495v1     1725903 59 -   2157725 I
e macFas5.chr4              28858672 0 - 170955103 C

a score=535579.000000
s hg38.chr6_GL000254v2_alt     11822 92 +   4827813 atgaaggattcatcaccacaccgggaagcaacagccccggctccagagtcggccactcgtccatgcacagagaaggagaggtctcatgaagc
s panTro5.chr6              28988840 92 + 175400573 atgaaagattcatcaccacaccgggaagcaacagcccgggctccagagtcggccactcgtccatgcacagagaaggagaggtctcatgaagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29232544 92 + 173848474 atgaaagattcatcaccacaccgggaagcaacagcccgggctccagagtcggccactcgtccatgcacagagaaggagaggtctcatgaagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5023330 92 +   6154872 atgaagtattcatcaccacaccgggaagcaacagcccgggctccagagtcggccactcgtccatgcacagagaaggagaggtctcatgaagc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74025463 92 + 122973662 atgaaggattcatcaccacaccgggaagcaacagcccggactccagagtcggccactcgtctgtgcacagaaaaggagaggtctcatgaagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29168644 92 + 172585720 atgaaggattcatcaccagaccaggaagcaacagcccaggctccagagtcagccactcatccgtaaacagagaaggagaggcctcaagaagc
i rheMac8.chr4             C 0 I 59
s macFas5.chr4              28858672 92 - 170955103 atgaaggattcatcaccagaccaggaagcaacagcccaggctccagagtcagccactcatccgtaaacagagaaggagaggcctcaagaagc
i macFas5.chr4             C 0 I 59
s macNem1.NW_012011356v1     1830774 92 -   2996164 atgaaggattcatcaccagaccaggaagcaacagcccaggctccagagtcagccactcatccgtaaacagagaaggagaggcctcaagaagc
i macNem1.NW_012011356v1   C 0 I 59
s cerAty1.NW_012001495v1     1725962 92 -   2157725 atgaaggattcatcaccagaccaggaagcaacagcccaggctccagagtcagccactcgtctgtacacagagaaggagaggcctcaagaagc
i cerAty1.NW_012001495v1   I 59 I 59
s chlSab2.chr17             28175054 89 -  71996105 atgaaggattcatcaccagaccaggaagcagcagcccaggctccagagtcagccacccgtccgtaaacagaga---agaggcctcaagaagc
i chlSab2.chr17            I 65 I 59
s colAng1.NW_012115566v1     1709993 92 -   3067355 atgaaggattcatcaccagaccaggaagcaacagcccaggctccagagtcagccactcgtccgtgcacagagaaggagaggcctcaagaagc
i colAng1.NW_012115566v1   I 59 I 59
s calJac3.chr4             171306435 86 - 171630274 atggaggattcatcacccgaccgggcagcagca------gctccgcagtccgccaaccacctgtgcacagacgaggagaggtctcgtgaagc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            125246 92 -    375362 atggaggatccatcgccagaccaggtagcagcagcctgggctccagagtccaccaacctcctgtgcacggacgaggagcggtctcctgaagc
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1469030 516 -   2232465 I
e aotNan1.NW_018494050v1       74594 595 -    285216 I
e cebCap1.NW_016108108v1      128378 333 -    373274 I
e manLeu1.NW_012104165v1     1820459 264 +   2316924 I

a score=2392.000000
s hg38.chr6_GL000254v2_alt     11914  8 +   4827813 ----------------------------------------------tcacgaga-------------
s panTro5.chr6              28988932  8 + 175400573 ----------------------------------------------tcacgaga-------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29232636  8 + 173848474 ----------------------------------------------tcacgaga-------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5023422  8 +   6154872 ----------------------------------------------tcacgaga-------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74025555  8 + 122973662 ----------------------------------------------tcacgaga-------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29168795  8 + 172585720 ----------------------------------------------tcacaagg-------------
i rheMac8.chr4             I 59 C 0
s macFas5.chr4              28858823  8 - 170955103 ----------------------------------------------tcacaagg-------------
i macFas5.chr4             I 59 C 0
s macNem1.NW_012011356v1     1830925  8 -   2996164 ----------------------------------------------tcacaagg-------------
i macNem1.NW_012011356v1   I 59 C 0
s cerAty1.NW_012001495v1     1726113  8 -   2157725 ----------------------------------------------tcacaagg-------------
i cerAty1.NW_012001495v1   I 59 C 0
s chlSab2.chr17             28175202  8 -  71996105 ----------------------------------------------tcacaagg-------------
i chlSab2.chr17            I 59 C 0
s manLeu1.NW_012104165v1     1820723  8 +   2316924 ----------------------------------------------tcacaagg-------------
i manLeu1.NW_012104165v1   I 264 C 0
s colAng1.NW_012115566v1     1710144  8 -   3067355 ----------------------------------------------tcacgagg-------------
i colAng1.NW_012115566v1   I 59 C 0
s calJac3.chr4             171306521 67 - 171630274 tttggcgcagtctgggaccctcactccttttgcaacaagttgtttggcatgaggcccagtcaccaga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            125338 67 -    375362 ttcggcacagtctgggacccttgctctttttgcaacaagttgtttggcatgaggcccaggcaccagc
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1469030 516 -   2232465 I
e aotNan1.NW_018494050v1       74594 595 -    285216 I
e cebCap1.NW_016108108v1      128378 333 -    373274 I

a score=229949.000000
s hg38.chr6_GL000254v2_alt     11922 29 +   4827813 gcccttcgcgactgagctcaaggaacaa-g
s panTro5.chr6              28988940 29 + 175400573 gcccttcgccactgagctcaaggaacaa-g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29232644 29 + 173848474 gcccttcgccactgagctcaaggaacaa-g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5023430 29 +   6154872 gcccttcgcgactgagctcaaggaacaa-g
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74025563 29 + 122973662 ggccttcgcgactgggctcaaggaacaa-g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29168803 29 + 172585720 gcccttcgtgactgggctcaagggacaa-a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28858831 29 - 170955103 gcccttcgtgactgggctcaaggaacaa-g
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1830933 29 -   2996164 gcccttcgtgactgggctcaaggaacaa-g
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1726121 29 -   2157725 gcccttcgtgactgggctcaaggaacaa-g
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28175210 29 -  71996105 gccgttcgcgactgggctcaaggaacaa-g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1820731 29 +   2316924 gcccttcgtgactgggctcaaggaacaa-g
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1710152 29 -   3067355 gcccttcgcgactgggctcaaggaacag-g
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171306588 30 - 171630274 gcttttcacaacagggctcaaggaacacaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            125405 29 -    375362 gcctttcacgactgggttcaaggaacac-a
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1       75189 29 -    285216 gcctttcacgactgggctcaaggaacac-a
i aotNan1.NW_018494050v1   I 595 C 0
e otoGar3.GL873742           1469030 516 -   2232465 I
e cebCap1.NW_016108108v1      128378 333 -    373274 I

a score=6210345.000000
s hg38.chr6_GL000254v2_alt     11951 702 +   4827813 aaaaggtcaacttgtttttgcgattgtctgttgttttt----------caataactaacgtat-aggaatagattgaaatagagatttctccaaaacagcactggatgaacacctcaaggggttcatacaacctgtt-caggatttggtgaccattgtttgtgtccacgttcaattgagttcaaatttaatacgtaacttttcctccacaaactagaggacattaagttaagctatacacagaaagtaaaacttcacatattctctctcatttgtggaagccaaaaataaaacaattgaactcatggagacagagagtagaatgatggttaccagatgctgggaagggtattggagggggcagtgagatggttaatggatacaaaaat-atagttagcatgaataagatctatcatttgatagcacaacagggtgattatagtcaacaaaaatgtattgtacatttaaaaataacttaaagattataactggaatgtctgta--acaaagaaatgataaggtgttgaggcgatggatgaggtgatggatgcttcgtttatcccaatatgattattacacattgtatgcctgcat-caaaatatcccatgtatcatatatatacatatata----tactatgcagcagtaaaaatt-aaaaaTTAAAAAAAAGATCCATAGACGAA-GAAAAAATATCTTCaaaaataaaacaagaaaaaaacaa
s panTro5.chr6              28988969 701 + 175400573 aaaaggtcaacttgtttttgcgattgtctgttgttttt----------caataactaacgtat-aggaatagattgaaatagagatttctccgaaacagcactggatgaacacctcaaggggttcatacaacctgtt-caggatttggtgaccgttgtttgtgtccacgttcaattgagttcaaatttaatacgtaacttttcctccacaaactagaggacattaagttaagctatacacagaaagtaaaacttcacatattctctctcatttgtggaagccaaaaataaaacaattgaactcatggagacagagagtagaatgatggttaccagatgctgggaagggtattggagggggcagtgagatggttaatggatacaaaaat-atagttagcatgaataagatctatcatttgatagcacaacagggcgattatagtcaacaaaaatgtattgtacatttaaaaataacttaaagattataactggaatgtctgta--acaaagaaatgataaggtgttgaggcgatggatgaggtgatggatgcttcgtttatcccaatatgattattacacattgtatgcctgcat-caaaatatcccatgtatcatatatatacatatata----tactatgcagccataaaaatt-aaaaaGT-AAAAAAAGATCCATAGACGAA-GAAAAAATATCTTCaaaaataaaacaagaaaaaaacaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29232673 699 + 173848474 aaaaggtcaacttgtttttgcgattgtctgttgttttt----------caataactaacgtat-aggaatagattgaaatagagatttctcggaaacagcactggatgaacacctcaaggggttcatacaacctgtt-caggatttggtgaccgttgtttgtgtccacgttcaattgagttcaaatttaatacgtaacttttcctccacaaactagaggacattaagttaagctatacacagaaagtaaaacttcacatattctctctcatttgtggaagccaaaaataaaacaattgaactcatggagacagagagtagaatgatggttaccagatgctgggaagggtattggagggggcagtgagatggttaatggatacaaaaat-atagttagcatgaataagatctatcatttgatagcacaacagggtgattatagtcaacaaaaatgtattgtacatttaaaaataacttaaagattataactggaatgtctgta--acaaagaaatgataaggtgttgaggcgatggatgaggtgatggatgcttcgtttatcccaatatgattattacacattgtatgcctgcat-caaaatatcccatgtatcatatatatacatatata----tactatgcagccataaaaatt-aaaaaGT--AAAAAAGATCCATAGACGAA-GAAAAAATATCTTCaaaaataaaacaag-aaaaaacaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5023459 701 +   6154872 aaaaggtcaacttgtttttgcgattgtctgttgttttt----------caataactaacgtat-acgaatagattgaaatagagatttctccgaaacagcactggatgaacacctcaagggattcatacaacctgtt-caggatttggtgaccattgtttgtgtccacgttcaactgagttcaaatttaatacataacttttcctccacaaactagaggacattatgttaagctatacacagaaagtaaaacttcacatattctctctcatttgtggaagccaaaaataaaacaattgaactcatggagacagagagtagaatgatggttaccagatgctgggaagggtattggagggggcagtgagatggttaatggatacaaaaat-atagttagcatgaataagatctatcatttgatagcacaacagggtgattatagtcaacaaaaatgtattgtacatttaaaaataacttaaagattataactggaatgtctgta--acaaagaaatgataaggggttgaggcaatggatgaggtgatggatgcttcgtttatcccaatatgattattacacattgtatgcctgcat-caaagtatcccatgtatcatatatatacatatata----tactatgcatccataaaaatt-aaaaaTT-AAAAAAAGGTCCATAGACGAA-GAAAAAATATCTTCaaaaataaaacaagaaaaaaacaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74025592 694 + 122973662 aaaaggtcaacttgtttttgcgattgtctgttgttttt----------caataactaacgtat-aggaatagattgaaatagagatttctccgaaacagcactggatgaacacctcaaggggttcatacaacctgtt-caggatttggtgaccattgtttgtgtccacgttcaattgagttcaaatttaatatgtaatttttcctccacaaactagaggacattattcgaagctatacacagaaagtaaaacttcacatattctctctcatttgtggaagccaaaaataaaacaattgaactcatggagac--agagtagaatgatggttaccagatgctgggaagggtattggagggggcagtgagatggttaatggatacgaaaat-atagttagcatgaataagatctatcatttgatagcacaacagggtgattatagtcagcaaaaatttattgtacatttaaaaa-----taaagattataactggaatgtctgta--acaaagaaatgataaggtgttgaggtgatgagtgaggtgatggatgcttcgtttatcccaatatgattattacacattgtatgcctgcat-caaaatatcccatgtatcatatatatacatatata----tactatgcatccataaaaatt-aaaaaTT-TAAAAAAGATCCATAGACGAA-GAAAAAACATCTTTAAAAATAAAACAAGGAAAAAAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29168832 701 + 172585720 aaaaggtcaacttgtttttgagattgcctgttgttttt----------caataacttacatgt-aggaatagattgaaatagagatttctccgaaacaacactggatgaacacctcaaggggctcatacagcctgttccaggatttggtgaccattgtttgtgtccatgttcaattgagttcaaatttaatatgtaacttttcctccacaaactagaggacattatgttaagccatgtacagaaagtaaaacttcacatattctctctcatttgtggaagccaaaaataaaacaattgaactcatggagacagagagtagaatgatggttaccagaggctgggaaaggtattggagggggcagtgagatggttaatggatacaaaaat-atagttagcatgaataagatctaccatttgatagcacaacagggtgattatagtccacaacaatttattgtacatttaaaaataacttaaagataataactggaacgtctgtaacacaaagaaataataaggtgttgaggcgatggatgaggtgatggatgcttcgtttaacctaatatgattattacacattgcatgcctgcat-caaaatatcccatttatc--atatatacatatata----tgctatgcacccat-acaatt-aaaaaTT--TAAAAAGATCCATAGATGAAGGAAAAAATACCTTTACAAATAAAACAAGGAAAAAAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28858860 701 - 170955103 aaaaggtcaacttgtttttgagattgcctgttgttttt----------caataacttacatgt-aggaatagattgaaatagagatttctccgaaacagcactggatgaacacctcaaggggctcatacagcctgttccaggatttggtgaccattgtttgtgtccatgttcaattgaattcaaatttaatatgtaacttttcctccacaaactagaggacattatgttaagccatgtacagaaagtaaaacttcacatattctctctcatttgtggaagccaaaaataaaacaattgaactcatggagacagagagtagaatgatggttaccagaggctgggaaaggtattggagggggcagtgagatggttaatggatacaaaaat-atagttagcatgaataagatctaccatttgatagcacaacagggtgattatagtccacaacaatttattgtacatttaaaaataacttaaagataataactggaacgtctgtaacacaaagaaataataaggtgttgaggcgatggatgaggtgatggatgcttcgtttaacctaataggattattacacattgcatgcctgcat-caaaatatcccatttatc--atatatacatatata----tgctatgcacccat-acaatt-aaaaaTT--TAAAAAGATCCATAGATGAAGGAAAAAATACCTTTACAAATAAAACAAGGAAAAAAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1830962 701 -   2996164 aaaaggtcaacttgtttttgagattgcctgttgttttt----------caataacttacatgt-aggaatagattgaaatagagatttctccgaaacagcactggatgaacacctcaaggggctcatacagcctgttccaggatttggtgaccattgtttgtgtccatgttcaattgagttcaaatttaatatgtaacttttcctccacaaactagaggacattatgttaagccatgtacagaaagtaaaacttcacatattctctctcatttgtggaagccaaaaataaaacaattgaactcatggagacagagagtagaatgatggttaccagaggctgggaaaggtattggaggaggcagtgagatggttaatggatacaaaaat-atagttagcatgaataagatctaccatttgatagcacaacagggtgattatagtccacaacaatttattgtacatttaaaaataacttaaagataataactggaacgtctgtaacacaaagaaataataaggtgttgaggcgatggatgaggtgatggatgcttcgtttaacctaatatgattattacacattgcatgcctgcat-caaaatatcccatttatc--atatatacatatata----tgctatgcacccat-acaatt-aaaaaTT--TAAAAAGATCCATAGATGAAGGAAAAAATACCTTTACAAATAAAACAAGGAAAAAAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1726150 701 -   2157725 aaaaggtcaacttgtttttgagattgcctgttgttttt----------caataacttacatgt-aggaatagattgaaatagagatttctccgaaacagcactggatgaacacctcaaggggctcatacagcctgttccaggatttggtgaccattgtttgtgtccacgttcaattgagttcaaatttaatatgtaacttttcctccacaaactagaggacattatgttaagccatgtacagaaagtaaaacttcacatattctctctcatttgtggaagccaaaaataaaacaatcgaactcatggagacagagagtagaatgatggttaccagaggctggaaagggtattggagggggcagtgagatggttaatggatacaaaaat-atagttagcatgaataagatctaccatttgatagcacaacagggtgattatagtccacaacaatttattgtacatttaaaaataacttaaagataataactggaatgtctgtaacacaaagaaataataaggtgttgaggcgatggatgaggtgatggatgcttcgtttaacctaatatgattattacacattgcatgcctgcat-caaaatatcccttttatc--atatatacatatatg----tgttatgcacccataaaaatt-aaaaaTT--TAAAAAGATCCATAGATGAAGT-AAAAATACCTTTAAAAATAAAACAAGGAAAAAAGAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28175239 701 -  71996105 aaaaggtcaacttgtttttgagattgcctgttgttttt----------caataccttacatgt-aggaatagattgaaatagagatttctccgaaacagcactggatgaacacctcaaagggctcatacggcctgttccaggatttggtgatcattgtttgcgtccacgttcaattgagttcaaatttaatatataacttttcctccacaaactagaggacattatgttaagccatgtacagaaagtaaaacttcacatattctctctcatttgtggaagccaaaaataaaacaattgaactcaaggagacagagagtagaatgatggttaccagaggctgggaagggtattggagggggcagtgagatggttaatagatacaaaaat-gtagttagcgtgaataagatctatcatttgatagcacaacagggtgattatagtccacaacaatttattgtacatttaaaaataacttaaagataataactggaatgtctgtaacacaaagaaataataaggtgttgaggcaatggatgaggtgatggatgcttcgtttaacctaatatgattattacagattgcacacctgcat-caaaatatcccatgtttc--gtatatacatatata----tgctatgcacccataaaaatt-aaaaaTT--TAAGAAGATCCATAGATGAA-GAAAAAATACCTTTAAAAATAAAACAAGGAAAAAAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1820760 701 +   2316924 aaaaggtcaacttgtttttgagattgcctgttgttttt----------caataacttacatgt-aggaatagattgaaatagagatttctccgaaacagcactggatgaacacctcaaggggctcatacagcctgttccaggatttggtgaccattgtttgtgtccacgttcaattgagttcaaatttaatatgtaacttttcctccacaaactagaggacattatgttaagccatgtacagaaagtaaaacttcacatattctctctcatttgtggaagccaaaaataaaacaatcgaactcatggagacagagagtagaatgatggttaccagaggctgggaagggtattggagggggcagtgagatggttaatggatacaaaaat-acagttagcatgaataagatctaccatttgatagcacaacagggtgattatagtccacaacaatttattgtacatttaaaaataacttaaagataataactggaacgtctgtaacacaaagaaataataaggtgttgaggcgatggatgaggtgatggatgcttcgtttaacctaatatgattattacacattgcatgcctgcat-aaaaatatcccatttatc--atatatacatatata----tgctatgcacccat-acaatt-aaaaaTG--TAAAAAGATCCATAGATGAAGGAAAAAATACCTTTACAAATAAAACAAGGAAAAAAGAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1710181 700 -   3067355 aaaaggtcaacttgtttttgagattgcctgttgttttt----------caataacttacatgt-aggaatagattgaaacagagatttctccgaaacagcactggatgaacacctcacggggatcatacaacctgttccaggatttggtgactattgtttgtgtccacgttcaattgagttcaaatttaatatgtaacttttcctccacaaactacaggacattatgttaagccatgtacagaaagtaaaacttcacatattctctctcatttgtggcagccaaaaataaaacaattgaactcatggagacagagagtagaatgatggttaccagaggctgggaagggtattggagggggcagtgagatggttaatggatacaaaaat-atagttagcatgaataagatctatcatttgatagcacaacagggtgattatagtccacagtaatttattgtacatttaaaaataactt-aagatagtaactggaatgtctgtaacacaaagaaataataaggtgttgaggcgatggatgaggtgatggatgcttcgtttaacctaatatgattattacacattgcatgcctgcat-caaaatatcccgtgtatc--atatatacatatata----tgctatgcactcataaaaatt-aaaaaTT--TTAAAAGATCCATAGATGAA-GAAAAAATACCTTTAAAAATAAAACAAGGAAAAAAGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171306618 677 - 171630274 aaaaagtcaatttgtttttgcaattgtctgttttttttt---------caataactaacatatggggaatagattgaaatagaggtttctccaaaacagcgcgggatgaacacctcaaggggctcacacgacctgttccgggacttggtggccatggtttgtgaccacgttcatttaagctcaaatataatatttaacttttccttcccaaactagaagacattatgttaagccaggaacagaaagtaacacttcacgtattcgctctcatttccggaagccaaaaataaaacaatggaactcatgaggacagag-gtagaatgatggttacccgaggctgggaaggctattggggtgggcggtgagatggttaatggacagaaaaaa-----atagaaggaacaagagctctcatttgatagcaccacagggtgatgacagtcaacaaaaatttactgtacatttaaaaatagctcaaggagtataactggaatgtttgtaacataaagaaatgttaaggtgt------------taaggtgctggatgccttgtttaccgtaatgtgattattacatgttgtgtacctgcataaaaaatatcccatgtatcatatacatacatatata--tgtactatgttcccataaaaattaaaaaATT----TAAAAATTCATAGAT------CAAAAAATCTATAAAAATA--------AAAAAAGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            125434 697 -    375362 aaaaagtcaattagtttttgcaattgtctgctttttttttttcccccccaatagctaacatat-gggaatagattgaaatagaggtttctccaaagcagcgctggatgaacacctcaaggggctcacatgacctgttacgggacttggtggccatggtttgtgaccacgttgatttaagctcaaatataatatttaacgtttcctccacaaactagaggacattatcttaagccaggcacagaaagtaacacttcacatgttctctcttatttcctgaagccaaaaataaagcaaccgaactcatgaagacagag-gtagaatgatggtta-cggaggctgggaaggctactggggtgggcagtgacatggttaatggacagaaaaaaaatagatagaaggaataagatctgtcatttgatagcacaacagggtgactacaatcaacaaaaatttactgtacatttaaaaataactaaaagagtataactggaatgttcgtaacataaagaaatgttaagatgg------------taacgtgctggatgccttgtttaccgtaatgtaattattacacgttgtatacccgcat-caaaatatcccatatatcatatacatacatgtata----tactatgttcccataaaaagt-aaaaaTA----AAAAAATTCATAGATGAA-GAAAAAAAATCTCTAAAAATA-AAAAAGGAAAAAAGAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      128711 685 -    373274 aaaaggtcaacttgcttctgcgattgcctattgttttt----------cactaactaacatat-gggaatagattgaaatagaggtttctccaaaacagcgctggatgaacacctctagggtctcacatgacctgttccaggacttggtggccatggtttgtgaccacgttcatttaagctgaaatataatatttaacttttcctccacaagctagaggacattatcttaagccaggcacagaaagcaacacttcacatgttcgctttcatttccggaagccaaaaataaaacaatcgaactaatgaaggcagag-gtagaatgatggttaacagcggctgggaaggctattggggtgggcagtgacatggttaatggatagaaaaaa-----acagaaggaataatatctgtcattcgatagcacgacagggtgactacagtcagcaaaaatttactgcacatttaaaaatagctaaa--agtataactggaatgtttataacataaagaaatgttaaggtgt------------taaggtgctggatgccttgtttactgtaatgtgattattacactttgtatacccgcat-caaaatagcccatgtatcatatacacatatatatatatatactatgttcccataaaaagtaaaaaATA----AAAAAAATCATAAATGAA---GAAAAAATCTCTAAAAATGAAAAAAGGAAAAAAGAA
i cebCap1.NW_016108108v1   I 333 C 0
s aotNan1.NW_018494050v1       75218 675 -    285216 aaaaagtcaatttgtttttgcaattgtctgttttttttc---------caataactaacatat-gggaatagattgaaatagaggtttctccaaaacagcgctggatgaacatctcaaggggctcacacgacctgtttcgggacttggtggccatggtttgtgaccacgttcatttaagctcaaatataatatttaacttttcctccacaaactagaggacattatgttaagccaggcacagaaagtaacacttcacatgttcgctctcatttccggaagccaaaaataaaacaatcgaactcatggagacagag-gtagaatgatggttaccggaggccgggaaggctattggggtgggcagtgagatggtcaatgg---------------atagaaggaataagatctgccatttgatagcacaacagggtgactatagtcaacaaaaatttactgtacatttaaaattaactaaaagagtataactggaatgtttgtaacataaagaaatgttaaggtgt------------taaagtgctggatgccttgtttgccgtaatgtgattattacacgttgtatacccgcat-caaaatatcccatgtatcatatacatacatatata----tactatgttcccataaaaatt-aaaaaTA----AAAAAATTCATAGATGAA-GAAAAAAAATCTCTAAAACTATAAAAAGGAAAAAAGAA
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1469030 516 -   2232465 I

a score=1211203.000000
s hg38.chr6_GL000254v2_alt     12653 115 +   4827813 agaaaaGATCCATTATTAATTACTGCCTTTGTCTGTCTGTGTTTGGAGAACGAATATCTGGCAGAAAAATGCTTGCTGTGTTTAACATCACTATTTCTAAAA-CCTTTAGACTGTG
s panTro5.chr6              28989670 115 + 175400573 agaaaaGATCCATTATTAATTACTGCCTTTCTCTGTCTGTGTTTGGAGAACGAATATCTGGCAGAAAAATGCTTGCTGTGTTTAACATCACTATTTCTAAAA-CCTTTAGACTGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29233372 115 + 173848474 agaaaaGATCCATTATTAATTACTGCCTTTCTCTGTCTGTGTTTGGAGAACGAATATCTGGCAGAAAAATGCTTGCTGTGTTTAACATCACTATTTCTAAAA-CCTTTAGACTGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5024160 114 +   6154872 agaaaaGATCCATTATTAATTACTGCCTTTGTCT-TCTGTGTTTGGAGAACGAATATCTGGCAGAAAAATGCTTGCTGTGTTTAACATCACTATTTCTAAAA-CCTTTAGGCTGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74026286 115 + 122973662 ATAAAAGATCCATTATTAATTACTGCCTTTGTCTATCTGTGTTTGGAGAACGAATATCTGGCAGAAAAATGCTTGCTGTGTTTAACATCACTATTTCTAAAA-TCTTTAGACTGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29169533 115 + 172585720 GGAAAAGATCCATTATTAATTACTGCCTTTGTCTATCGGTGTTTGGAGAACGAATATCTGGCAGAAAAAGGCTTGCTGTGTTTAACATCACTATTTTTAAAA-CCTTTAGACTGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28859561 115 - 170955103 GGAAAAGATCCATTATTAATTACTGCCTTTGTCTATCGGTGTTTGGAGAACGAATATCTGGCAGAAAAAGGCTTGCTGTGTTTAACATCACTATTTTTAAAA-CCTTTAGACTGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1831663 115 -   2996164 GGAAAAGATCCATTATTAATTACTGCCTTTGTCTATCGGTGTTTGGAGAACGAATATCTGGCAGAAAAAGGCTTGCTGTGTTTAACATCACTATTTTTAAAA-CCTTTAGACTGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1726851 111 -   2157725 AGAAAAGATCCATTATTAATTACTGCCTTTGTCTATCGGTGTTTGGAGAACGAATATCTGGCAGAAAAAGGCTTGCTGTGTTTAACATCACTATTTTTAAAA-----TAGACTGTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28175940 115 -  71996105 AGAAAAGATCCATTATTAATTACTGCCTTTGTCTATCGGTGTTTGGAGAACGAATATCTGGCAGAAAAAGGCTTGCTGTGTTTAACATCACTATTTCTAAAA-CCTTTAGACTGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1821461 115 +   2316924 GGAAAATATCCATTATTAATTACTGCCTTTGTCTATCGGTGTTTGGAGAACGAATATCTGGCAGAAAAAGGCTTGCTGTGTTTAACATCACTATTTTTAAAA-CCTTTAGACTGTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1710881 115 -   3067355 AGAAAAGATCCATTATTAATTACTGCCTTTGTCTATCGGTGTTTGGAGAACGAATATCTGGCAGAAAAAGGCTTGCTGTGTTTAACATCACTATTTCTAAAA-CCTTTAGACTGTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171307295 115 - 171630274 AGAAAAGATCCATTATTACTTCCTGCCTTTGTCTATCTGTGTTCGAAGAACGAAAATCTGGCAGAAAAAGGCTTGCTGTGTTTAACGCCACTGTTTCTAAAA-CCATTGGACGGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            126131 115 -    375362 AGAAAAGATCCATTATTACTTCCCGCCTTTGTCTATCTGTGTTTGGAGAACGAATACCTGGCAGAAAAAGGCTTGCTGTGTTTAACGTCACTGTTTCTAAAG-CCACTGGACGGTG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      129396 113 -    373274 AGTAAAGATCCATTATTACTTCCCGCCTTTGTCTATC--CGTTTGGAGAACGAATATCTGGCAGAAAAAGGCTTGCTGTGTTTAACGCCATTGTTTCTAAAG-CCACTGGACGGTG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       75893 115 -    285216 AGAAAAGATCCATTATTACTTCCCTCCTTTGTCTATCTGTGTTTGGAGAACGAATATCTGGCAGAAAAAGTCTTGCTGTGTTTAACGCCACCGTTTCTAAAA-CCACTGGACGGTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1469546 115 -   2232465 AGAAAAGGTCCATGATTAATTATTA-CTTTGTCTGTGGGTGTTCAGAGATCCAATATCTGGTAGAACAGGACTTGCTGTGTTTAACAACACTCATTCTAAAAACCTTCAGACTGTG
i otoGar3.GL873742         I 516 I 16003

a score=253642.000000
s hg38.chr6_GL000254v2_alt     12768 28 +   4827813 ACCAGCAAAAGCGGCACTAAATACTAAA
s panTro5.chr6              28989785 28 + 175400573 ACCAGCAAAAGCGGCACTAAATACTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29233487 28 + 173848474 ACCAGCAAAAGCGGCACTAAATACTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5024274 28 +   6154872 ACCAGCAAAAGCGGCACTAAATACTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74026401 28 + 122973662 ACCAGCAAAAGCGGCACTAGATACTAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29169648 28 + 172585720 ACCAGCAAAAACGGCACTAAATGCTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28859676 28 - 170955103 ACCAGCAAAAACGGCACTAAATGCTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1831778 28 -   2996164 ACCAGCAAAAACGGCACTAAATGCTAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1726962 28 -   2157725 ACCAGCAAAAACGGCACTAAATGCTAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28176055 28 -  71996105 ATCAGCAAAACCGGCACTAAATGCTAAA
i chlSab2.chr17            C 0 I 187
s manLeu1.NW_012104165v1     1821576 28 +   2316924 ACCGGCAAAAACGGCACTAAATGCTAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1710996 27 -   3067355 ACCAGCAAAAACGGCACTAAATGTAAA-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171307410 28 - 171630274 ACCAGCAAACGCGGCACTGAAAGCTAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            126246 28 -    375362 ACCAGCAAACGCGGCACTGAAAGCTAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      129509 28 -    373274 ACCAGCAAACGCGGCACTGAAAGCTAAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       76008 28 -    285216 ACCAGCAGAAGCGGCACTGAAAGCGAAA
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1469661 16003 -   2232465 I

a score=1783596.000000
s hg38.chr6_GL000254v2_alt     12796 194 +   4827813 CCAAAAGACACTGTTACACGCGGTTTT-CCTCTCTGGCCAGCCAGACCGCCGGTCTGAGGTCCACTTGCCAAAGTGATGCC-TG-------GCTGGCAGTTTCATCCACCAACAGAAAGGGGTCCATTATGGAATGTTCTCTTGCATCTTCAAATTCTTCCTCCTTCGTCTCTCTTACCCTCTGCCTACAAAGGCTTCAAGAA
s panTro5.chr6              28989813 195 + 175400573 CCAAAAGACACTGTTACACGCGGTTTTCCCTCTCTGGCCAGCCAGACCGCCGGTCTGAGGTCCACTTGCCAAAGTGATGCC-TG-------GCTGGCAGTTTCATCCACCAACAGAAAGGGGTCCATTATGGAATGTTCTCTTGCCTCTTCAAATTCTTCCTCCTTCGTCTCTCTTACCCTCTGCCTACAAAGGCTTCAAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29233515 195 + 173848474 CCAAAAGACACTGTTACACGCGGTTTTCCCTCTCTGGCCAGCCAGACCGCCGGTCTGAGGTCCACTTGCCAAAGTGATGCC-TG-------GCTGGCAGTTTCATCCACCAACAGAAAGGGGTCCATTATGGAATGTTCTCTTGCATCTTCAAATTCTTCCTCCTTCGTCTCTCTTACCCTCTGCCTACAAAGGCTTCAAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5024302 195 +   6154872 CCAAAAGACACTGTTACACGCGGTTTTCCCTCTCTGGCCAGCCAGACCGCCGGTCTGAGGTCCACTTGCCAAAGTGATGCC-TG-------GCTGGCAGTTTCATCCACCAACAGAAAGGGGTCCATTATGGAATGTTCTCTTGCATCTTCAAATTCTTCCTCCTTCGTCTCTCTTACACTCTGCCTACAAAGGCTTCAAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74026429 195 + 122973662 CCAAAAGACACTGTTACACGCGGTTTTCCCTCTCTGGCCAGCCAGACCGCCGGTCTGAGGTCCACTTGCCAAAGTGATGCC-TG-------GCTGGCAGTTTCATCCACCAACAGAAAGGGGTCCATTATGGAATGTTCTCTTGCATCTTCAAATTCTTCCTCCTTCGTCTCTCTTACCCTCTGCCTACAAAGGCTTCAAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29169676 195 + 172585720 CCAAAAGACGCTGTTACACGCGGTTTTCCCTCTCTGGCCAGCCAGACTGCCGGTCTGAGGTCCACTTGACAAAGTGATACC-TG-------GCTGGCAATTTCATCCACCAACAGGAAGGGGTCCGTTATGGAATGTTCTCTTGCATCTTCAAATTCTTCTTCCTTCGTCTCTCTTACCCTCTGCCGACAAAGGCTGCAAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28859704 195 - 170955103 CCAAAAGACGCTGTTACACGCGGTTTTCCCTCTCTGGCCAGCCAGACTGCCGGTCTGAGGTCCACTTGACAAAGTGATACC-TG-------GCTGGCAATTTCATCCACCAACAGGAAGGGGTCCGTTATGGAATGTTCTCTTGCATCTTCAAATTCTTCTTCCTTCGTCTCTCTTACCCTCTGCCGACAAAGGCTGCAAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1831806 195 -   2996164 CCAAAAGACGCTGTTACACGCGGTTTTCCCTCTCTGGCCAGCCAGACTGCCGGTCTGAGGTCCACTTGACAAAGTGATACC-TG-------GCTGGCAATTTCATCCACCAACAGGAAAGGGTCCGTTATGGAATGTTCTCTTGCATCTTCAAATTCTTCTTCCTTCGTCTCTCTTACCCTTTGCCGACAAAGGCTGCAAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1726990 195 -   2157725 CCAAAAGACACTGTTACACGCGGTTTTCCCTCTCTGGCCAGCCAGACTGCCGGTCTGAGGTCCACTTGACAAAGTGATACC-TG-------GCTGGCAGTTTCATCCACCAACAGGAAGGGGTCCGTTATGGAATGTTCTCTTGCATCTTCAAATTCTTCTTCCTTCGTCTCTCTTACCCTTTGCCGACAAAGGCTGCAAGAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28176270 195 -  71996105 ccAAAAGACACTGTTACACGCGGTTTTCCCTCTCTGGCCAGCCAGACTGCCAGTCTGAGGTCCACCTGACAAAGTGATACC-TG-------GCTGGCAGTTTCATCCACCAACAGGAAGGGGTCCGTTATGGAATGTTCTCTTGCATCTTCAAATTCTTCTTCCTTCGTCTCTCTTACCCTCTGCCGACAAAGGCTGCAAGAA
i chlSab2.chr17            I 187 C 0
s manLeu1.NW_012104165v1     1821604 195 +   2316924 CCAAAAGACGCTGTTACACGCGGTTTTCCCTCTCTGGCCAGCCAGACTGCCGGTCTGAGGTCCACTTGACAAAGTGATACC-TG-------GCTGGCAATTTCATCCACCAACAGGAAGGGGTCCGTCATGGAATGTTCTCTTGCATCTTCAAATTCTTCTTCCTTCGTCTCTCTTACCCTCTGCCGACAAAGGCTGCAAGAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1711023 195 -   3067355 CCAAAAGACACTGTTACACGCGGTTTTCCCTCTCTGGCCAGCCAGACTGCCGGTCTGAGGTCCACTTGACAAAGTGATACC-TG-------GCTGGCAGTTTCATCCACCAACAGGAAGGGGTCCGTTATGGAATGTTCTCTTGCATCTTCAAATTCTTCTTCCTTCGTCTCTCTTACCCTCTGCCGACAAAGGCTGCAAGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171307438 200 - 171630274 CCCAAAGACACTTTTCT-CGTGGGCTTCCCTCCCTGGCCAGCCAGACCGCCCGCCTGAGGCCCACTTGCCAAAGTGACGCCTTGGGTGGCAGGTGGCAGCTCCATCCACCGACAGAAAGGGGTCC--TATGGAAAGTTCTTTTGCGTCTTCAAATTCCTCCTCCTTCGTCTCCCTTCCCCGCTTCCTACAAAGACTGCAGGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            126274 198 -    375362 CCCAAAGACGCGGCTGT-CGTGGACTTCCCTCCCTGGCCAGCCAGACCGCCCGCCTGAGGCCCACTTGCCAAAGTGATGCC-TGCGTGGCGGGTGGCAGCTCCGTCCACCTACAAAAAGGGGTCC-TTATGGCATGTTCTCCTGTGTCTTCAAATTCTTCCTCCTTCGTCTCCCTTTCCCTCTTCCTAC--AGACCGCGGGAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      129537 200 -    373274 CCCAAAGACGCTGCTGC-CGTGGGCTTCTCTCCCTGGCCAGCCAGACCGCCCGCCTGAGGCCCACTTGCCAAAGTGATGCC-TGGGTGGCGGGTGGCAGCTCCGTCCACCTACAGGAAGGGGTCC-TTGTGGAAGGTTCTCCTGCGTCTTCGCATTCTTCCTCCTTCCTCTCCCTTCCCCTCTTCCTACAAAGCCCGCAGGAA
i cebCap1.NW_016108108v1   C 0 I 73
s aotNan1.NW_018494050v1       76036 200 -    285216 CCCAACGACGCTGGTCT-CGTGGGTTTCCCTCCCTGGCCAGCCAGACCGCCCGCCTGAGGCCCACGTGCCAAGGTGCTGCC-TGGGTGGCAGGTGGCGGCCCCGCCCACCTACAGAAACGGGTCC-TTACGGAATGTTCTCTTGCGTCTTCCAATTCTTCCTCCCCCGTCTCCCTTCCCCTCTTCCCACAAACACTGCAGGAA
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1469661 16003 -   2232465 I

a score=593358.000000
s hg38.chr6_GL000254v2_alt     12990 84 +   4827813 AGAGATGCAAGACAATACTGAGGGATACGAACAAAAGTAGCTCCACAGTTGCCTCGAGAAGTTTAGGTTGCAGGTAATTGGCGA
s panTro5.chr6              28990008 84 + 175400573 AGAGATACAAGACAATACTGAGGGATACGAACAAAAGTAGCTCCACAGTTGCCTCGAGAAGTTTAGGTTGCAGGTAATTGGCGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29233710 84 + 173848474 AGAGATACAAGACAATACTGAGGGATACGAACAAAAGTAGCTCCACAGTTGCCTCGAGAAGTTTAGGTTGCAGGTAATTGGCGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5024497 84 +   6154872 AGAGATACAAGACAATACTGAGGGATACGAACAAAAGTAGCTCCACAGTTGCCTCGAGAAGTTTAGGTTGCAGGTAATTGGCGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74026624 84 + 122973662 AGACATACAGGACAATACTGAGGGATACGAACAAAAGTAGCTCCACTATGGCCTTGAGAAGTTTAGGTTGCAGGTAATTGGCGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29169871 84 + 172585720 AGACATACAAGACAATACTGAGGGATACGAACAAAAGTAGCTCCACTGTTGCCTCGAGAAGTTTAGGTTGCAGGTAATTGGCGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28859899 84 - 170955103 AGACATACAAGACAATACTGAGGGATACGAACAAAAGTAGCTCCACTGTTGCCTCGAGAAGTTTAGGTTGCAGGTAATTGGCGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1832001 84 -   2996164 AGACATACAAGACAATACTGAGGGATACGAACAAAAGTAGCTTCACTGTTGCCTCCAGAAGTTTAGGTTGCAGGTAATTGGCGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1727185 84 -   2157725 AGACATACAAGACAATACTGAGGGATACGAACAAAAGTAGCTCCACTGTTGCCTCGATAAGTGTAGGTTGCAGGTAACTGGCGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28176465 84 -  71996105 AGACATACAAGACAATACTGAGGGATACGAACAAAAGTAGCTCCACTGTTGCCTCGAGAAGTTTAGGTTGCAGGTAATTGGCGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1821799 84 +   2316924 AGACATACAAGACAATACTGAGGGATACGAACAAAAGTAGCTCCACTGTTGCCTCGAGAAGTGTAGGTTGCAGGTAACTGGCGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1711218 84 -   3067355 AGACATACAAGACAATACTGAGAGATACGAACAAAAGTAGCTCCACTGTTGCCTCTAGAAGTTTAGGCTGCAGGTAATTGGCGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171307638 71 - 171630274 ----------CACCCTACTGAGAGACAGGAACAAA---AGCTGCGCTGCTGCCTGGACAGGTTTAGGTCGCCGGCAATTGGCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            126472 60 -    375362 ----------CACCCTACTGAGCGATACGAACAAGAGCAGCTGTGCTGCTGCCTGGAGGGGTTTGGGTC--------------A
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1       76236 74 -    285216 ----------CGCCCTCCTGAGCGACACGAGCAAAAGCAGCTGCGCCGCTGCCCGGAGAGGTTGAGGTCGCCGGCAACCGGCGA
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1469661 16003 -   2232465 I
e cebCap1.NW_016108108v1      129737 73 -    373274 I

a score=1948692.000000
s hg38.chr6_GL000254v2_alt     13074 217 +   4827813 GAATGAAACCCTCTGTATCTAGCAACTC-----CGCAGTGCTTTGTGTAGAAGACGCTCCATCTCAGGTTACGAAAATCTACAGAAAGGAAATGTTTAAAAAGAGAAAAGGAAAATATTCCTAGGGATTATAATGTCTCTCTTAAGCAGGGTCTTCGAAAAGAGGATAATTCAAGTAATATGATTTACAAATTGCAACATGAAAC--AAAATGAACTGAACAAA
s panTro5.chr6              28990092 219 + 175400573 GAATGAAACCCTCTGTATCTAGCAACTC-----CGCAGTGCTTTGTGTGGAAGACGCTCCATCTCAGGTTACGAAAATCTACAGAAAGGAGATGTTTAAAAAGAGAAAAGGAAAATATTCCTAGGGATTATAATGCCTCTCTTAAGCAGAGTCTTCGAAAAGAGGATAATTCAAGTAATGTGATTTACAAATTGCAACATGAAACATAAAACGAACTGAACAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29233794 219 + 173848474 GAATGAAACCCTCTGTATCTAGCAACTC-----CGCAGTGCTTTGTGTGGAAGACGCTCCATCTCAGGTTACGAAAATCTACAGAAAGGAGATGTTTAAAAAGAGAAAAGGAAAATATTCCTAGGGATTATAATGCCTCTCTTAAGCAGAGTCTTCGAAAAGAGGATAATTCAAGTAATGTGATTTACAAATTGCAACATGAAACATAAAACGAACTGAACAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5024581 219 +   6154872 GAATGAAACCCTCTGTATCTAGCAACTC-----CGCAGTGCTTTGTGTAGAAGACGCTCCATCTCAGGTTACGAAAATCTACAGAAAGGAGAAGTTTAAAAAGAGAAAAGGAAAATATTCCTAGGGATTATAATGTCTCTCTTAAGCAGGGTCTTCGAAAAGAGGATAATTCAAGTAATGTGATTTACAAATTGCAACATGAAACATAAAACGAACTGAACAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74026708 206 + 122973662 GAATGAAATCCT-------------CTC-----CGCAGTGCTTTGTGTAGAAGATGCCCCAGCTCAGGTTACGAAAATCTACAGAAAGGAGATGTTTAAAAAGAGAAAAGGAAAATATTCCTAGCGATTATAATGTCTCTCTTAAGCAGGGTTTTCGAAATGAGGATAATTCAAGTAACGTGATTTACAAATTGCAACATGAAACATAAAACGAACGGAACAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29169955 219 + 172585720 GAATGAAACCCTCTGTATCTAGCAACTC-----CGCAGTGCTTTGTGTAGAAGACACCTCATCTCAGGTTACGAAAGTCTGCAGAAAGGAGATGTTTAAAAGAAGAAAAGGAAAATGTTCCTAGCGGTCATAATGTCTCTCTTAAGCAGGATCTTCGAAATGAGGAGAATTCAAGTAACGTGATTTGCAAATTGCAACATGAAACATAAAACGAACGGAACAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28859983 219 - 170955103 GAATGAAACCCTCTGTATCTAGCAACTC-----CGCAGTGCTTTGTGTAGAAGACACCTCATCTCAGGTTACGAAAGTCTGCAGAAAGGAGATGTTTAAAAGAAGAAAAGGAAAATGTTCCTAGCGGTCATAATGTCTCTCTTAAGCAGGATCTTCGAAATGAGGAGAATTCAAGTAACGTGATTTGCAAATTGCAACATGAAACATAAAACGAACGGAACAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1832085 219 -   2996164 GAATGAAACCCTCTGTATCTAGCAACTC-----CGCAGTGCTTTGTGTAGAAGACATCTCATCCCAGGTTACGAAAGTCTGCAGAAACGAGATGTTTAAAAGAAGAAAAGGAAAATGTTCCTAGCGGTCATAATGTCTCTCTTAAGCAGGATCTTCGAAATGAGGAGAATTCAAGTAACGTGATTTGCAAATTGCAACATGAAACATAAAACGAACGGAACAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1727269 219 -   2157725 GAATGAAACCCTCTGTATCTAGCAACTC-----TGCAGTGCTTTGTGTAGAAGACGCCTCATCTCAGGTTACGAAAGTCTACAGAAAGGAGATGTTTAAAAGAAGAAAAGGAAAATGTTCCTAGCGGTCATAATGTCTCTCTTAAGCAGGATCTTCGAAATGAGGAGAATTCAAGTAACGTGACTTACAAATTGCAACATAAAACATAAAACGAACGGAACAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28176549 219 -  71996105 GAATGAAACCCTCTGTATCTAGCAACTC-----TGCAGCGCTTTGTGTAGAAGACGCCTCATCTGAGGTTATGAAAGTCTACAGAAAGGAGATGTTTAAAAGGAGAAAAGGAAAATGTTCCTAGCGGTCATAATGTCTCTCTTAAGCAGGATCTTCGAAATGAGGAGAATTCAAGTAACGTGATTTACAAATTGCAACATGAAACATAAAACAAACGGAACAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1821883 219 +   2316924 GAATGAAACCCTCTGTATCTAGCAACTC-----CGCAGTGCTTTGTGTAGAAGACGCCTCATCTCAGGTTACGAAAGTCTACAGAAAGGAGATGTTTAAAAGAAGAAAAGGAAAATGTTCCTAGCGGTCATAATGTCTCTCTTAAGCAGGATCTTCGAAATGAGGAGAATTCAAGTAACGTGACTTACAAATTGCAACATAAAACATAAAACGAACGGAACAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1711302 224 -   3067355 GAATGAAACCCTCTGTATCAAGCAACTCCTACACAAGGCGTCTTGTGTAGAAGACGCCTCATCTCAGGTTACGAAAATCTACAGAAAGGAGATGTTTAAAAGGAGAAAAGAAAAATGTTCCTAGCGGTCATAATGTCACTCTTAAGCAGGATCTTCGAAATGAGGAGAACTCAAGTAATGTGATTTACAAATTGCAACATGAAACATAAAACGAATGGAACAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171307709 219 - 171630274 GAAGGAAACGCTCTGTACCCAGCAGCTC-----CGCAGCGCTTTTCGCAGAAGATGCCGCATCTCAGGTTACGAAAACCTGCACAAAGGAGATGTTTAAAAAGAGAAAAAGAAAATGTTCTTAGCGATTACAATGTCTCCCTTAAACAGGGTCTTGGAAATGAGGAGAACTCAAGTCCTGTGATTTACAAACTGTAACACGAAACATAAAATGAACTGAAAAAA
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            126532 216 -    375362 GAAGGAAACGCTCTATACCCAGCAGCTC-----CGCAGGGCTTTTCCTAGAAGACGCCGCATCTCAGGTTACG-AAATCTGCACAAAGGAGATGTTTAAAAAGAGAAAAAGAAAATGTTCCTAGCGATTACAATGTCTCCCTTAAACAGGGTCTTCGAAATGAGGAGAATTCAAGTCCTGTGATTTACAAAC--TAACACGAAACATAAAATGAACTGATAAAA
i saiBol1.JH378348         C 0 I 1
s cebCap1.NW_016108108v1      129810 197 -    373274 GAAGGAAACGCTCTGTACCCAGCAGCCC-----CGCAGCG----------------------CTCAGGTTACGAAAATCTGCACAAAGCAGATGTTTAAATAGAGAAAAAGAAAATGTCCCTAGCGATTACAATGTCTCCCTTAAACAGGGTCTTCGAAATGAGGAGAATTCAAGTCCTGTAATTTACAAACTGTAACACAAAAGATAAAATGAACTGAAAAAA
i cebCap1.NW_016108108v1   I 73 I 46
s aotNan1.NW_018494050v1       76310 218 -    285216 GAAGGAAACGCTCTGTACCCAGCAGCTC-----CGCAGCGCTTTTCGTAGAAGATGCCGCGTCTCAGGTTACGAAAACCTGCACAAAGGAGATG-TTAAAAAGAGAAAAAGAAAATGTTCCTAGCGATGACAGTGTCTCCCTTAAACAGGGTCTTCGAAATGAGGAGAATTCAAGTCCTGTGATTTACAAACTGTGACACGAAACATAAAATGAACTGAAAAAA
i aotNan1.NW_018494050v1   C 0 I 7
e otoGar3.GL873742           1469661 16003 -   2232465 I

a score=194974.000000
s hg38.chr6_GL000254v2_alt     13291 45 +   4827813 TGGAGAAATCTAGATTACATACTCC-GTGGGTTGCGTCTACCCAGG
s panTro5.chr6              28990311 45 + 175400573 TGGAGAAATCTAGATTACAGACTCC-GTGGGTCGCGTCTACCGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29234013 45 + 173848474 TGGAGAAATCTAGATTACAGACTCC-GTGGGTCGCGTCTACCGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5024800 45 +   6154872 TAGAGAAATCTAGATTACATACTCC-ATCGGTCGTTTTTACCGAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74026914 45 + 122973662 TGGAGAAATCTAGATCAGACACTGC-GTGGGTCGCGGTAAGCAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29170174 45 + 172585720 TGGAGAAATCTAGATTAGATACTCC-GTGGACAATATCGTACGAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28860202 45 - 170955103 TGGAGAAATCTAGATTAGATACTCC-GTGGGCAACATCGTACGAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1832304 45 -   2996164 TGGAGAAATCTAGATTAGATACTCC-GTGGACAACATCGTACGATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1727488 46 -   2157725 TGGAGAAATCTAGATTAGATACTCCGGTGAACAACATTCCGCGAGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28176768 46 -  71996105 TGGAGAAATCTAGGTTAGATACTCCGGTGGACAACGCCGTCGCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1822102 46 +   2316924 TGGAGAAATCTAGATTAGATACTCCGGTGAACAACGTTTTGCGAGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1711526 45 -   3067355 TGGAGAAATCTAGATTAGGTATTCC-GTGGACAGTATTGCAGAAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171307929 44 - 171630274 TAGAGAGACCTAGATTAGATATTCC-TTGGAACACCAAACTCAAG-
i calJac3.chr4             I 1 I 1
s saiBol1.JH378348            126749 44 -    375362 TTGAGAAATCTAGATTAGACATTCC-TTGGAACATTTAACTTAAG-
i saiBol1.JH378348         I 1 I 1
s aotNan1.NW_018494050v1       76535 39 -    285216 CAGAGAAATCTAGAT-----ATTCC-TTGAAAGACCAGATTTGAG-
i aotNan1.NW_018494050v1   I 7 I 1
e otoGar3.GL873742           1469661 16003 -   2232465 I
e cebCap1.NW_016108108v1      130007 46 -    373274 I

a score=1169127.000000
s hg38.chr6_GL000254v2_alt     13336 124 +   4827813 gcctggatagctcagttggtagaacatcagacttttaatctgacggtgcagggttcaagtccctgttcaggcgAAATATTTGTGTGTTTTACTCTAGCTCCGGAGTCCCCAACCTCCAGTAAAC
s panTro5.chr6              28990356 124 + 175400573 gcctggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcaggcgGAATAGTTGTCTATTTTACTCTAGCTCCGGAGTCCCCAACCTCCAGTAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29234058 124 + 173848474 gcctggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcaggcgGAATAGTTGTCTATTTTACTCTAGTTCCGGAGTCCCCAACCTCCAGTAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5024845 124 +   6154872 gcctggatagctcagtcggtaaagcgtcagacttttaatctgagggtccagggttcaagtccctgttcaggcgGAATGATTGCCTGTTTTACTCTAGCTCCGGAGTCCCCAACCTCCAGTAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74026959 124 + 122973662 gcctggatagctcagtcggtagagcaccagacttttaatctgagggtccagggttcaagtccctgttcaggcgGATTCTTCATCTGTTTTACCCTAGATCAAGAGTTCCCAACCTCCAGTAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29170219 124 + 172585720 gcctaggtagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccttgttcaggcgAACTCGTCATCTGTTTTACTCTAGATCAGGAGTCCCCAACCTTCAGTACag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28860247 123 - 170955103 gcctaggtagctcagtcggtaaagcatcagacttttaatcggagggtccagggttcaagtccctgttcaggcgAGCTCTTTATCTGTTTTACTCTAGATCAGGAG-CCCCAACCTTCAGTACag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1832349 124 -   2996164 gcctaggtagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcaggcgAACTCTTCATCCATTTTACTCTAGATCAGGAGTCCCCGACCTTCAGTACag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1727534 124 -   2157725 gcctgagtagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcaggcgGACTTTTCATCTGTTTTACTCCAGATCAGGAGTCCCCAGCCTTCAGTACAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28176814 124 -  71996105 gcctgggtagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcaggcgTACTCTTCATCCGTTTTACCCTAGATCAGGAGTCCCCAGCCTTCAGTACAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1822148 124 +   2316924 gcctgggtagctcagtcggtagagcatcagacttttattctgagggtccagggttcaagtccctgttcaggcgGAGTTTTTATCTGTTTTACTCCAGATcaggagtccccagccttcagtacac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1711571 124 -   3067355 gcctggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcaggcgGACTCTCCAGCTATTTTACTCTAGATCAGGAGTCCCTAGCCTCCAGTACAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171307974 124 - 171630274 gcctggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcaggcgGACTACTCAGACGTTTTACCTTAGACcaggagtccccaacctccagtacac
i calJac3.chr4             I 1 C 0
s saiBol1.JH378348            126794 124 -    375362 gcctggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcgagcccctgttcaggcgGACTAACCAGACGTTTTACCCTAGACCATGAGTCCCCAACCTCCAGTACAC
i saiBol1.JH378348         I 1 C 0
s cebCap1.NW_016108108v1      130053 124 -    373274 gcctggatagctcagttggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcaggcgGACTAATCAGACGTTTTACTCTAGACCAGGAGTCCCCAGCCTCCAGTATAC
i cebCap1.NW_016108108v1   I 46 I 192
s aotNan1.NW_018494050v1       76575 124 -    285216 gcctggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcaggcgGACTAATCAGACGTTTTACCCTAGACCGGGAGTCCCCAACCTCCAGTACAC
i aotNan1.NW_018494050v1   I 1 I 33
e otoGar3.GL873742           1469661 16003 -   2232465 I

a score=202255.000000
s hg38.chr6_GL000254v2_alt     13460 37 +   4827813 GTAAccgcgtatcaggcagcgcggcaggcgagccaga
s panTro5.chr6              28990480 37 + 175400573 GTAACCGGGTATCAGGCAGCgcggcaggagagccagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29234182 37 + 173848474 GTAACCGGGTATCAGGCAGCgcggcaggagagccagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5024969 37 +   6154872 GTAATCGGGTATCAGGCAGCgcggcaggagagccagc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74027083 36 + 122973662 G-AACCAGGTACAaggtagcgcggcaggagagccagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29170343 36 + 172585720 g-aaccgggtacaaggcagcgtggcaggagagcctgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28860370 36 - 170955103 g-aaccgggtacaaggcagcgtggcaggagagccagc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1832473 36 -   2996164 g-aaccgggtacaaggcagcgtggcaggagagcctgc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1727658 36 -   2157725 g-aaccgggtacaaggcagtgcgacaggagagccagc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28176938 36 -  71996105 G-AACCGAGTACAAGGCAGCgcggcaggagagccagc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1822272 36 +   2316924 g-aaccgggtacaaggcagtgcgacaggagagccagc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1711695 36 -   3067355 T-AGCCCGGTACAAGGCAGCgcggcaggagagccagc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171308098 34 - 171630274 -taactgggtaccaagcatcacggcaggagag-cag-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            126918 35 -    375362 -TAATGGGGTACCAAGCATCTcagcaagagagccag-
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       76699 33 -    285216 I
e cebCap1.NW_016108108v1      130177 192 -    373274 I

a score=717378.000000
s hg38.chr6_GL000254v2_alt     13497 105 +   4827813 gaagtttcatctgtccttatacagcaactc-cccaacgctcctgcgac-cgcctgagc--t-actcttcct--cccagataagcgggggcgtcagattctcacagaagtcca
s panTro5.chr6              28990517 105 + 175400573 gaagtttcatctgtccttatacaacaactc-cccatcgctcctgcgac-cgcctgagc--t-actcttcct--cccagataagcgggggcgtcagattctcacagaagtcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29234219 105 + 173848474 gaagtttcatctgtccttatacaacaactc-cccatcgctcctgcgac-cgcctgagc--t-actcttcct--cccagataagcgggggcgtcagattctcacagaagtcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5025006 105 +   6154872 aaagcttcatctgtccttatacagcaaatc-cccatcgctcctgcgac-cgcctgagc--t-acacttcct--cccagagaagcgcgggcgtcagattctcacagaagtcca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74027119 105 + 122973662 gaagcttcatctgtacttatacagcaactc-cccatcgctactgtgac-cgcctgagc--a-ccccttcct--cccagattagcggaggcgtcagattctcatagaagccca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29170379 107 + 172585720 gaagcttcatctgcacttaaacagcaactcccccatcgctcctatgac-cccctgagc--tcccccttcct--cccagataagcggaggcgtcaaattctcatagaagccca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28860406 107 - 170955103 gaagcttcatctgcacttaaacagcaactcccccatcgctcctatgac-cccctgagc--tcccccttcct--cccagataagcggaggcgtcaaattctcatagaagccca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1832509 107 -   2996164 gaagcttcatctgcacttaaacagcaactcccccatcgctcctatgac-cccctgagc--tcccccttcct--cccagataagcggaggcgtcaaattctcatagaagccca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1727694 107 -   2157725 gaagcttcatctgcccttaaacagcaactctcccatcgctcctatgac-cgcctgagc--tcccccttcct--cccagataagcggaggcgtcaaattctcatagaagccca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28176974 107 -  71996105 gaagcttcatctgcacttaaacagcgactcccccatcgctcctatgac-cgcctgagc--tcccccttcct--cccagataagcggaggcgtcaaattctcatagaagccga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1822308 107 +   2316924 gaagcttcatctgcccttaaacagcaactctcccatcgctcctatgac-cgcctgagc--tcccccttcct--cccagataagcggaggcgtcaaattctcatagaagccca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1711731 107 -   3067355 gaagcttcatctgcacttacacaccaactgccccatcgctcctatgac-ctcctgagc--tcccccttcct--cccagataagcggaggcgtcaaattctcatagaagtcca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171308132 100 - 171630274 gaagttttatctgtactt--aaagcagct--ctcatcgctcctgtgac-ggcctgagatgatctccttcct--cccagatgagctgaggcgtcagattttcacagga-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            126953 101 -    375362 gaagctttatctgtcctt--acagcagct--ctcatcactcctgtgacgggcctgaga--atctccttcctcccccaagtgagctgaggcgtcagattttcataaga-----
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1       76732 103 -    285216 gaagctttatctgtactta-acagcagct--ctcgtcgctcctatgac-ggcctgagc--gtctccttctt--cccagatgagctgaggc-tcagattttcacaggagcgca
i aotNan1.NW_018494050v1   I 33 I 64
e otoGar3.GL873742           1469661 16003 -   2232465 I
e cebCap1.NW_016108108v1      130177 192 -    373274 I

a score=149109.000000
s hg38.chr6_GL000254v2_alt     13602 26 +   4827813 aaccctattgtgaactgcgtatgaaa
s panTro5.chr6              28990622 26 + 175400573 aaccctattgtgaactgcgtatgaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29234324 26 + 173848474 aaccctattgtgaactgcgtatgaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5025111 26 +   6154872 aaccctattgtgaactgcgtatgaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74027224 26 + 122973662 aaccctattgtgaactgcgcatgaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29170486 26 + 172585720 aaccccaatgtgaactgtgcatgaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28860513 26 - 170955103 aaccccaatgtgaactgtgcatgaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1832616 26 -   2996164 aaccccaatgtgaactgtgcatgaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1727801 26 -   2157725 aaccccattgtgaactgcacatgaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28177081 26 -  71996105 aaccccactgtgaactgtgcatgaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1822415 26 +   2316924 aaccccactgtgaactgcacatgaaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1711838 26 -   3067355 aaccccattgtgaactgtgcatgaaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171308232 10 - 171630274 ----------------gcgcatgaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            127054 10 -    375362 ----------------gcgcatgaaa
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       76835 64 -    285216 I
e cebCap1.NW_016108108v1      130177 192 -    373274 I

a score=5757.000000
s hg38.chr6_GL000254v2_alt     13628 1 +   4827813 g
s panTro5.chr6              28990648 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29234350 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5025137 1 +   6154872 g
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74027250 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29170512 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28860539 1 - 170955103 g
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1832642 1 -   2996164 a
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1727827 1 -   2157725 g
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28177107 1 -  71996105 g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1822441 1 +   2316924 g
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1711864 1 -   3067355 g
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171308242 1 - 171630274 a
i calJac3.chr4             C 0 I 57
s saiBol1.JH378348            127064 1 -    375362 a
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      130369 1 -    373274 G
i cebCap1.NW_016108108v1   I 192 I 3
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       76835 64 -    285216 I

a score=22698.000000
s hg38.chr6_GL000254v2_alt     13629 3 +   4827813 gga
s panTro5.chr6              28990649 3 + 175400573 gga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29234351 3 + 173848474 gga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5025138 3 +   6154872 gga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74027251 3 + 122973662 gga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29170513 3 + 172585720 gga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28860540 3 - 170955103 gga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1832643 3 -   2996164 gga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1727828 3 -   2157725 gga
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28177108 3 -  71996105 gga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1822442 3 +   2316924 gga
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1711865 3 -   3067355 gga
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            127065 3 -    375362 gga
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       76835 64 -    285216 I
e cebCap1.NW_016108108v1      130370 3 -    373274 I
e calJac3.chr4             171308243 57 - 171630274 I

a score=20055.000000
s hg38.chr6_GL000254v2_alt     13632 2 +   4827813 tc
s panTro5.chr6              28990652 2 + 175400573 tc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29234354 2 + 173848474 tc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5025141 2 +   6154872 tc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74027254 2 + 122973662 tc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29170516 2 + 172585720 tc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28860543 2 - 170955103 tc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1832646 2 -   2996164 tc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1727831 2 -   2157725 tc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28177111 2 -  71996105 tc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1822445 2 +   2316924 tc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1711868 2 -   3067355 tc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171308300 2 - 171630274 tc
i calJac3.chr4             I 57 C 0
s saiBol1.JH378348            127068 2 -    375362 tc
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      130373 2 -    373274 tc
i cebCap1.NW_016108108v1   I 3 C 0
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       76835 64 -    285216 I

a score=8622587.000000
s hg38.chr6_GL000254v2_alt     13634 921 +   4827813 tag-------------------------------------------------------attgtgggctccttatgagaatctaatg-cttgataatccgtcactgttttccatcagtgccagatgggactgtctagttgcaggaaaacaaactcaaggcttccagtgattctacattatggtgagttggatacttatttcattatatattacaatataataacaatattaaaaaagtgcacaataaatctaatgtgcttgaatcatcccaaaatcat-cccccccaacccctgctccctcatccatggaaaaaactgtctttcatgaaac--ggtctctggtgccaaaaaggtggggaactgccgCCCAAGATAGTTTATACCAATTAAGCACAGGAAGAAGTTCAGATACTTGTTTGTACAGTGACTAAAACTTTGCTACTTTATGCTTTACAAATGTGGAATGATTTACATCATGAAATTACCAGCCCTAAGGGATTGCCTTAGTGAAGTTGTTTTCCAAACACCAGAATACAGAAATCTAAACTATTTTAGAGACTGTTGACCTGGAGATTTGCATTTTTACATATTTTTTAG---AGAATCTCCTTCAACGGTTAACTGAAAACAAAATCaatcaaaatttctaaactctaaaaacagag-----------aaagagatattgaaagcaagaaaagagacaaaacaccttacctacagagaaaaccaatttgcataacagtgggtatcttatcagaaatcacagaagtcagaaagagtggcacaacagttttcaaggaccgaaagaaaag----aattgttaattctgaattctatatccacagaaaatatcctttagaactgaagaagaaatcaagacattttcagagc---aaagaa-aactaagataattagcttctagcagaattatcctttaaaaaatagttaaatttctccagatgg-aaagaaatgataaaag-aagaaataattgacaccag
s panTro5.chr6              28990654 921 + 175400573 tag-------------------------------------------------------attgtgggctccttatgagaatctaatg-cttgataatccgtcactgttttccatcagtgccagatgggactgtctagctgcaagaaaacaaactcaaggcttccagtgattctacattatggtgagttggatacttatttcattatatattacaatataataacaatataaaaaaagtgcacaataaatctaatgtgtttgaatcatcccaaaatcat-cccccccaacccctgctccctcatccatggaaaaaactgtctttcatgaaac--ggtctctggtgccaaaaaggtggggaactgccgCCCAAGATAGTTTATACCAATTAAGCACAGGAAGAAGTTCAGATACTTGTTTGTACAGTGACTAAAACTTTGCTACTTTATGCTTTACAAATGTGGAATGATTTACATCATGAAATTACCAGCCCTAAGGGATTGCCTTAGTGAAGTTGTTTTCCAAACACCAGAATACAGAAATCTAAACTATTTTAGAGACTGTTGACCTGGAGATTTGCATTTTTACGTATTTTTTAG---AGAATCTCCTTCAACGGTTAACTGAAAACAAAATCaatcaaaatttctaaactctaaaaacagag-----------aaagagatattgaaagcaacaaaagagacaaaacaccttacctacagagaaaaccaatttgcataacagtgggtatcttatcagaaatcacagaagtcagaaagagtggcacaacagttttcaaggaccgaaagaaaag----aattgttaattctgaattctatatccacagaaaatatcctttagaactgaagaagaaatcaagacattttcagagc---aaagaa-aactaagataattagctgctagcagaattatcctttaaaaaatagttaaatttctccagatgg-aaagaaatgataaaag-aagaaataattgacatcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29234356 921 + 173848474 tag-------------------------------------------------------attgtgggctccttatgagaatctaatg-cttgataatccgtcactgttttccatcagtgccagatgggactgtccagctgcaagaaaacaaactcaaggcttccagtgattctacattatggtgagttggatacttatttcgttatatattacaatataataacaatataaaaaaagtgcacaataaatctaatgtgtttgaatcatcccaaaatcat-cccccccaacccctgctccctcatccatggaaaaaactgtctttcatgaaac--ggtctctggtgccaaaaaggtggggaactgccgCCCAAGATAGTTTATACCAATTAAGCACAGGAAGAAGTTCAGATACTTGTTTGTACAGTGACTAAAACTTTGCTACTTTATGCTTTACAAATGTGGAATGATTTACATCATGAAATTACCAGCCCTAAGGGATTGCCTTAGTGAAGTTGTTTTCCAAACACCAGAATACAGAAATCTAAACTATTTTAGAGACTGTTGACCTGGAGATTTGCATTTTTACGTATTTTTTAG---AGAATCTCCTTCAACGGTTAACTGAAAACAAAATCaatcaaaatttctaaactctaaaaacagag-----------aaagagatattgaaagcaacaaaagagacataacaccttacctacagagaaaaccaatttgcataacagtgggtatcttatcagaaatcacagaagtcagaaagagtggcacaacagttttcaaggaccgaaagaaaag----aattgttaattctgaattctatatccacagaaaatatcctttagaactgaagaagaaatcaagacattttcagagc---aaagaa-aactaagataattagctgctagcagaattatcctttaaaaaatagttaaatttctccagatgg-aaagaaatgataaaag-aagaaataattgacatcag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5025143 924 +   6154872 tag-------------------------------------------------------attgtgggctccttgtgagaatctaatg-cttgataatccgtcactgttttccatcagtgccagatgggactgtctagttgcaggaaaacaaactcaaggcttccagtgattctacattatggtgagttggatacttatttcattatatattacaatgtaataacaatataagtaaagtgcacaataaatctaatgtgcttgaatcatcccaaaatcat-cccccccaacccctgctccctcatccatggaaaaaactgtctttcatgaaac--ggtctctggtgccaaaaaggtggggaactgccgCCCTAGATAGTTTATACCAATTAAGCACAGGAAGAAGTTCAGATACTTATTTGTACAGTGACTAAAACTTTGCTACTTTATGCTTTACAAATGTGGGATGATTTACATCATGAAATTACCAGCCCTAAGGGATTGCCTTAGTGAAGTTGTTTTCCAAACACCAGAACACAGAAATCTAAACTATTTTAGAGACTGTTGACCTGGAGATTTGCATTTTTACGTATATTTTAGAGAAGAATCTCCTTCAACGGTTAACTGAAAACAAAATCaatcaaaatttctaaactctaaaaac---------------aaagagatattgaaagcaacaaaagagacaaaacaccttacctacagagaaaaccaatttgcataacagtgggtatcttatcagaaatcacagaagtcagaaagagtggcacaacagttttcaaggaccgaaagaaaagaattaattgttaattctgaattctatatccacagaaaatatcctttagaactgaagaagaaatcaagacattttcagagc---aaagaa-aactaagataattagctgctagcagaattatcctttaaaaaatagttaaatttctccagatgg-aaagaaatgataaaag-aagaaataattgacatcag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74027256 922 + 122973662 tag-------------------------------------------------------attgtgggctccttatgagaatctaatg-cttgacaatccatcactgttttccatcactgccagatgggactgtctagttgcaagaaaacaaactcaaggcttccagtgattctacattatagtgagttggatacttatttcattatatattacaatgtaataacaatat----aaagtgcacaataaatctaatgtgcttgaatcatcccaaaattatccccccccaacccctgctccctcatccatgaaaaaaactgtctttcatgaaac--agtcgctggtaccaaaaaggtggggaactgccgCCCTAGATAGTTTATACCAGTTAAGCACAGGAAGAAGTTCAGATACTTGTTTGTACAGTGACTAAAACTTTGCTACTTTATGCTTTACAAATGCGGAATGATTTACATCGTGAAATTACCAGCCCTAAGGGATTGCGTTAGTGAAGTTGTTTTCCAAACAACAGAATACAGAAATCTAAACTATTTTAGAGACTGTTGACCTGGAGATTTGCATTTTTATGTATTTTTTAGAGAAGAGTCTCCGTCAACGGTTGACCGAAAACAAAATCaatcaaaatttctaaactctaaaaacagag-----------aaagagatattgaaagcaacaaaagagacaaaacaccttacctatagagaaaaccaatttgcgtaacagtgggtatcttaccagaaatcatagaagtcagaaagagtggcacaacggttttcaaagaccgaaagaaaag----aattgctaattctgaattctatatccagagaaaatatcctttagaactgaagaagaaatcaagacattttcagagc---aaagaa-aactaagataattagctgctagcagaattatcctttaaaaaatagttaaatttctccagacggaaaagaaatgatacaag-aagaaataattgacatcag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29170518 917 + 172585720 tag-------------------------------------------------------a-tgtgggctccttatgagaatctaatg-cttgatgatccgtcactgttttccatcactgccagatgggaccgtctagttgcaggaaaacaaacacaaggcttccagtgattctacattatggtgagttggatacttatttcgttatatattacaatgtaataacaatataaataaagtgcacaataaatctaatgtgcttgaatcatccccaaatcat--ccccccaacccctgctccctcatccatggaaaaaattgtctttgatgaaat--ggtccctcgtgccaaaaaggtggggaactgccgCCCTAGATAGTTTATACCAATTAAGCACAGGAAAAGGTTCAGATA-TTGTTTGTACGGTCACTAAAACTTTACTACTTTATACATCACAAATGTGGAATGATTTACATCATGAAATTACTAGCCCTAAGGGATTGCC-TAGTAAAGTTGTTTTCCAAACACCAGAATACAGAAATCTAAACTATTTTAGAGACTGTTGACCTGGAGATTTGCATTTTTATGTATTTTTTAGAGAAGAATCTCCTTCAACAGTTGACTGAAAACAAAATCaatcaaaatttctaaactctaaaaacagat---------------agatattgaaaacaataaaagagacaaaacaccttacctacagagaaaacaaatttgcatattagtgggtatcttatcagaaatcgtagaggtcagaaagagtggcacaacagttttcaaggaccaaaagaaaag----aattgctaattctgaattctatatccagagaaaatatcctttagagctgaagaagaaatcaagacattttcagagt-aaaaaaaa-aactaagataattagct--tagcagagttatcctgtaaaaaatagctaaatttctccagacagaaaagaaatgataaaag-aagaaataattgatatcag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28860545 918 - 170955103 tag-------------------------------------------------------a-tgtgggctccttatgagaatctaatg-cttgatgatccgtcactgttttccatcactgccagatgggaccgtctagttgcaggaaaacaaacacaaggcttccagtgattctacattatggtgagttggatacttatttcgttatatattacaatgtaataacaatataaataaagtgcacaataaatctaatgtgcttgaatcatccccaaatcat--ccccccaactcctgctccctcatccatggaaaaaattgtctttgatgaaat--ggtccctcgtgccaaaaaggtggggaactgccgCCCTAGATAGTTTATACCAATTAAGCACAGGAAAAGGTTCAGATA-TTGTTTGTACAGTCACTAAAACTTTACTACTTTATATATCACAAATGTGGAATGATTTACATCATGAAATTACTAGCCCTAAGGGATTGCCTTAGTAAAGTTGTTTTCCAAACACCAGAATACAGAAATCTAAACTATTTTAGAGACTGTTGACCTGGAGATTTGCATTTTTATGTATTTTTTAGAGAAGAATCTCCTTCAACAGTTGACTGAAAACAAAATCTATCAaaatttctaaactctaaaaacagat---------------agatattgaaaacaataaaagagacaaaacaccttacctacagagaaaacaaatttgcatattagtgggtatcttatcagaaatcgtagaggtcagaaagagtggcacaacagttttcaaggaccaaaagaaaag----aattgctaattctgaattctatatccagagaaaatatcctttagagctgaagaagaaatcaagacattttcagagt-aaaaaaaa-aactaagataattagct--tagcagaattatcctgtaaaaaatagctaaatttctccagacagaaaagaaatgataaaag-aagaaataattgatatcag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1832648 923 -   2996164 tag-------------------------------------------------------a-tgtgggctccttatgagaatctaatg-cttgatgatccgtcactgttttccatcactgccagatgggaccgtctagttgcaggaaaacaaacacaaggcttccagtgattctacattatggtgagttggatacttatttcgttatatattacaatgtaataacaatataaataaagtgcacaataaatctaatgtgcttgaatcatccccaaatcat--ccccccaacccctgctccctcatccatggaaaaaattgtctttgatgaaac--ggtccctcgtgccaaaaaggtggggaactgccgCCCTAGATAGTTTATACCAATTAAGCACAGGAAAAGGTTCAGATA-TTGTTTGTACAGTCACTAAAACTTTACTACTTTATACATCACAAATGTGGAATGATTTACATCATGAAATTACTAGCCCTAAGGGATTGCCTTAGTAAAGTTGTTTTCCAAACACCAGAATACAGAAATCTAAACTATTTTAGAGACTGTTGACCTGGAGATTTGCATTTTTATGTATTTTTTAGAGAAGAATCTCCTTCAACAGTTGACTGAAAACAAAATCaatcaaaatttctaaactctaaaaacagat-----------aaagagatattgaaaacaataaaagagacaaaacaccttacctacagagaaaacaaatttgcatattagtgggtatcttatcagaaatcgtagaggtcagaaagagtggcacaacagttttcaaggaccaaaagaaaag----aattgctaattctgaattctatatccagagaaaatatcctttagagctgaagaagaaatcaagacattttcagagtaaaaaaaaa-aactaagataattagct--tagcagaattatcctgtaaaaaatagctaaatttctccagacagaaaagaaatgataaaag-aagaaataattgatatcag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1727833 924 -   2157725 tag-------------------------------------------------------attgtgggctccttatgagaatctaatg-cttgatgatccgtcactgttttccatcactgccagatgggaccttctagtagcaggaaaacaaacacaaggtttccagtgattctacattatggtgagttggatacttatttcgttatatattataatgtaataacaatataaatgaagtgcacaataaatctaatgtgcttgaatcatccccaaatcat--ccccccaacccctgctccctcatccatggaaaacattgtctttgatgaaac--ggtccctcgtgccaaaaaggtggggaactgccgCCCTAGAGAGTTTATACCAATTAAGCACAGGAAAAGGTTCAGATA-TTGTTTGTACAGTTACTAAAATTTTACTACTTTATGCATCACAAATGTGGAATCATTTACATAATGAAATTACTAGCCCTAAGGGATTGCCTTAGTAAAGTTGTTTTCCAAACACCAGAATACAGAAATCTAAACTGTTTTAGAGACTGTTGACCTGGAGATTTGCATTTTTATGTATTTTTTAGAGAAGAATCTCCTTCAACAGTTGACTGAAAACAAAATCaatcaaaatttctaaactctaaaaacagat-----------aaagagatattgaaaacaataaaagagacaaaacaccttacctacagagaaaaccaatttgcatattagtgggtatcttatcagaaatcatagaggtcagaaagagtggcacaacagttttcaaggaccaaaagaaaag----aattgctagttctgaattctatatccagagaaaatatccttcagagctgaagaagaaatcaagacattttcagagcaaaaaaaaa-aactaagacaattagct--tagcggaattatcctttaaaaaatagctaaatttctccagacagaaaagaaatgataaaag-aagaaataattgatatcag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28177113 917 -  71996105 tag-------------------------------------------------------attgtgggctccttatgagaatctaatg-cttgatgatccgtcactgttttccattactgccagatgggaccatctagttgcaggaaaacaaacacaaggcttccagtgattctatattatggtgagttggatacttatttcgttatatattacaatgtaataacaatataaataaagtgcacaataaatctaatgtgcttgaatcatccccaaatcat--ccccccaacccctgctccctcatccatggaaaaaattgtctttgatgaaac--ggtctctcgtgccaaaaaggtggggaactgcCACCCTAGATAGTTTATACCAATTAAGCACAGGAAAAGGTTCAGATA-TTGTTTGTACAGTCACTAAAACTTTACTACTTTATGCATCACAAACGTGGAATGATTTACATCATGAAATTACTAGCCCTAAGGGATTGCCTTAGTAAAGTTGTTTTCCAAACACCAGAATACAGAAATCTAAACTATTTTAGAGACTGTTGACCTGGAGATTTGCATTTTTATGTATTTTTTAGAGAAGAATCTCCTTCAACAGTTGACTGAAAACAAAATCaatcaaaatttctaaactctaaaaacagat-----------aaagagatattgaaaacaacaaaagagacaaaacaccttacttacagagaaaaccaatttgcatattagtgggtatcttatcagaaatcatagaggtcagaaagagtggcacaacagttttcaaggaccaaaagaaaag----aattgctaattctgaattctatatccacagaaaatatcctttagagctgaagaagaaatcaagacattttcagagcaaaaaaaaa--------ctatttagct--tagcagaattatcctttaaaaaatagctaaatttctccagacagaaaagaaatgataaaag-aagaaataattgatatcag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1822447 925 +   2316924 tag-------------------------------------------------------attgtgggctccttatgagaatctaatg-cttgatgatccgtcactgttttccatcactgccagatgggaccttctagtagcaggaaaacaaacacaaggcttccagtgattctacattatggtgagttggatacttatttcgttatatattataatgtaataacaatataaatgaagtgcacaataaatctaatgtgcttgaatcatccccaaatcat--ccccccaacccctgctccctcatccatggaaaacattgtctttgatgaaac--ggtccctcgtgccaaaaaggtggggaactgccgCCCTAGAGAGTTTATACCAATTAAGCACAGGAAAAGGTTCAGATA-TTGTTTGTACAGTTACTAAAATTTTACTACTTTATGCATCACAAATGTGGAATCATTTACATCATGAAATTACTAGCCCTAAGGGATTGCCTTAGTAAAGTTGTTTTCCAAACACCAGAATACAGAAATCTAAACTGTTTTAGAGACTGTTGACCTGGAGATTTGCATTTTTATGTATTTTTTAGAGAAGAATCTCCTTCAACAGTTGACTGAAAACAAAATCaatcaaaatttctaaactctaaaaacagat-----------aaagagatattgaaaacaataaaagagacaaaacaccttacctacagagaaaaccaatttgcatattagtgggtatcttatcagaaatcatagaggtcagaaagagtggcacaacagttttcaaggaccaaaagaaaag----aattgctagttctgaattctatatccagagaaaatatccttcagagctgaagaagaaatcaagacattttcagagcaaaaaaaaaaaactaagataattagct--tagcggaattatcctttaaaaaatagctaaatttctccagacagaaaagaaatgataaaag-aagaaataattgatatcag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1711870 912 -   3067355 tag-------------------------------------------------------attgtgggctccttatgagaatctaatg-cttgatgatctgtcactgttttccatcactgccagatgggaccgtctagttgcaggaaaacaaacacaaggcttccagtgattctacattatggtgagttggatacttatttcgttatatattacaatgtaataacaatataaataaagtgcacaataaatctaatgtgcttgaatcatccccaaatcat--ccccccaacgcctgctccctcatccatagaaaaaattgtctttgatgaaac--ggtccctggtgccaaaaagatggggaaATGTCGCCCTAGATAGTTTATACCAATTAAGCACAGGAAAAGGTTCAGATA-----TTGTACAGCCACTAAAACTTTGCTACTTTATGCATCACAAATGTGGAATGATTTACATCATGAAATTACTAGCCCTAAGGGATTGCCTTACTGAAGTTGTTTTCCAAACACCAGAATACAGAAATCTAAACTATTTTAGAGAGTTTAGA-CTGGAGATTTGCATTTTTATGTATTTTTTAGAGAAGAATCTCCTTCAACAGCTGACTGAAAACAAAATCaatcaaaatttctaaactctaaaaacagataaagagatattaaagagatattgaaaacaacaaaagagacaaaacaccttacctagagagaaaaccaatttgcctattagtgggtatctta----------------tcagaaagagtggcacaacagttttcaaggagcaaaagaaaag----aattgttaattctgaattctatatccagagaaaatatcctttagagctgaagaagaaatcaagacattttcagagc--aaaaaaa-aactaagataattagct--tagcagaattatcctttaaaatataactaaatttctccagacagaaaagaaacgataaaag-aagaaataattgatatcag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171308302 907 - 171630274 tag-------------------------------------------------------gttgtgggttccttatgagaatctaagggcttgaggatccctcactcttttccataactgctacatgggaccatctagttgcaggaaaacaatctcaaggcttccagggattctacattatggtgagctggatacttatttcattatatgttacaatgtaataacaataaaaataaagtgcacaataaacctgatgtgtttgaatcat--------------cccccagcccccgctccctcatccatggaaaa-attgtccttcatgaaacggggtctctggtgccaaaaaggtggagaactgctgCCCTGGAGAGTTTATACCAATTAAGCACAAGAAGAGGTTCAGATACTTGTTCCTACAGTGACTAAAGCTTTGCTACTTCATGCTTTGCAGATGTGAAAACATTTACATGATGAAATTACCAGCCTTAAGGGATTGCCTTAGTGAAGCTGTTTTCCAAACACCAGAATACAGAAATCTAAACTA-TGTAGAGATTGTTGACCTGGAGATTTGCTTTCTTATGTAATTTTTAGAGAAGAGTCTCCTTCAACGGTTGACTGAAAACAAAATCAATCAAAAGTTttaaactctaaaaacagat-----------aaagagataatgaaagcaacaaaagagac-acacacct----tacagagaaaacc-attcgaataacagtggatatcttatcagaaatcacagaggtcagaaagagtggcacaacagttttcaaggacggaaagaacag----aattgttgattctgaattctgtatccatagaaaataccctttagaactgaagaagaactcaagatattttcagagc---aaagaa-aactgagataattacctgctagcagaattatcctaaacaaaatagctaaatttctctagacagaaaagaaatgataaaag-aaaaaatcACTGCCATTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            127070 968 -    375362 taggttgtgagccccttgtgagaatctaatgattgataatccctaacgtgttctctaggttgtgggttcctaatgagaatctaatggcttgatgatccctctctcttttccataactactgcatgggaccatgtagttgcaggaaaacaatctcaaggcttccagtgattctacattatggtgagttggatacttatttcattctatgttacaatgcaaaaacaataaaaataaagtgcacaataaatctgatgtgtttgaatcat-------------ccccccagcccccgctccctcatccgtggaaaa-attgtccttcatgaaac--ggtctctggtgctaaaaaggtggggaactgttgCCCTGGAGAGTTTATACCAATTAAGCACAGGAAGAGGTTCAAATACTTGTTCCTACAGTGACTGAAGCTTTGCTACTTTATGCTTTACAGATGTGAAAATATTTACATGATGAAATTACCAGCCCTAAAGGATTGCCTTAGTGAAGTTGTTTTCCAAACACCAGAATACAGAAATCTAAACTA-TGTAGAGACTGTTGACCTGGAGATTTGCTTTTTTGTGTAATTTTTAGAGAAGAGTCTCCTTCAACGGTTGACTGAAAACAAAATCAATCAAAAATTttaaactctaaaaacagat-----------aaagagataatgaaagcaacaaaagagacaaaacaccttgcctacagagaaaaccaattcgaataacagtggatatcttctcagaaatcatggaggtcagaaagagtggcacaacagtttttaaggatggaaagaacag----aattgttgattctgaattctgtacccagagaaaataccctttagaactgatgaagaactcaagatattttcagagc---aaagaa-aactgagataattacctgctagcagaattatcctaaacaaaatagctaaacttctctagacagaaaagaagtgataaaagaaaaaaatcactgacatcag
i saiBol1.JH378348         C 0 I 2368
s cebCap1.NW_016108108v1      130375 908 -    373274 tag-------------------------------------------------------gttgtgggttcctaatgacaatctaatgtcttgatgatgtctcactcttttccataactgccacatgggaccatctagttgcaggaaaacaatctcaaggcttccagtgattctacattatggtgagttggatacttatttcattatatgctacaatgtaataacaataaaaataaagtgcacaataaatctgatatgtttgaatcat-------------ccccctagtccccgctccctcatccatggaaaa-attgtccttcatgaaac--ggtctctggtgccaaaaaggtggggaactgttgCCCTGGAGAGTTTATACCAATTAAGCACAAGAAGAGGTTCAGATACTTGTTCCTACAGTGACTAAAGCTTTGCTACTTTATGCTTTACAGATGTGAAAATATTTACATGATGAAATTACCAGCCCTAAGGGATTGCCTTAGTGAAGTTGTTTTCCAAACACCAGAATACAGAAATCTAAACTC-TATAGAGACTGTTGACCTGGAGATTTGCTTCTTTGTGTAATTTTTAGAGAAGAGTCTCCTTCAACAGTTGACTGAAAACAAAATCAATCAAAATTTTTACACtctaaaaacagat-----------aaagagataatgaaagcaacaaaagagacaaaacaccttgcctacagagaaaaccaattcgaataacagtggctaccttatcagaaatcatagaggtcagaaagagtggcacaacagttttcaaggacggaaagaacag----aattgttgattctgaattctgtatccagagaaaataccctttagaact---gaagaactcaagatattttcagagc---aaagaa-aactgagataattacctgccagcagaattatcctaaacaaaatagctaaatttctctagacagaaaag-agtgataaaag-aaaaaattactgacatcag
i cebCap1.NW_016108108v1   C 0 I 3068
s aotNan1.NW_018494050v1       76899 909 -    285216 tag-------------------------------------------------------gttgtgggttccttatgagaatctaatggcttgatgatccctcactcttttccataactgccacatgggaccatctagttgcaggaaaaccatctcaaggcttccagtgattctacattacagtgagttggatacttatttcattatacgttacaatgtaataacaataaaaataaaatgcacaataaatctgatgtgtttgaatcat-------------ccccccagcccctgctccctcatccatggaaaa-actgtccttcatgaaac--ggtctctggtgccaaaaaggtggggaactgctgCCCTGGAGAGTTTATACCAATTAAGCACAGCAAGAGGCTCAGATACTTGTTCCTACAGTGACTAAAGCTTTGCTACTTTATGCTTTACAGATGTCAAAATATTTACATGATGAAATTACCAGCCCTAAGGGATTGCCTTAGTGAAGTTGTTTTCCAAACACCAGAATACAGAAATCTAAACTA-TGTAGAGACTGTTGACCTGGAGATTTGCTTTTTTATGTAATTTCTAGAGAAGAGTCTC---CAACAGTTGACTGAAAACAAAATCaatcaaaatttttaaactctaaaaacagat-----------aaagagataatgaaagcaacaaaagagacaaaacaccttacctacagagaaaatgaattcgagtaacagtggatatcttatcagaaatcacagaggtcagaaagagtggcacaacagttttcaaggacggaaagaacag----aattgttgattctgaattctgtatccagagaaaataccctttagaactgaagaagaactcaagatattttcagagc---aaagaa-aattgagataattacctgctagcagaattatcctaaacaaaatagctaaatttctctagacagaaaagaaatgataaaat-aaaaaatcactgacatcag
i aotNan1.NW_018494050v1   I 64 I 2612
e otoGar3.GL873742           1469661 16003 -   2232465 I

a score=26394.000000
s hg38.chr6_GL000254v2_alt     14555 4 +   4827813 gaaa
s panTro5.chr6              28991575 4 + 175400573 gaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29235277 4 + 173848474 gaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5026067 4 +   6154872 gaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74028178 4 + 122973662 gaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29171435 4 + 172585720 gaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28861463 4 - 170955103 gaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1833571 4 -   2996164 gaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1728757 4 -   2157725 gaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28178030 4 -  71996105 gaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1823372 4 +   2316924 gaaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1712782 4 -   3067355 gaaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171309209 4 - 171630274 CAAA
i calJac3.chr4             C 0 I 2031
e saiBol1.JH378348            128038 2368 -    375362 I
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       77808 2612 -    285216 I
e cebCap1.NW_016108108v1      131283 3068 -    373274 I

a score=523730.000000
s hg38.chr6_GL000254v2_alt     14559  96 +   4827813 gaagaaagaacatggtaagc------------aaa-aaaaaaaaaggtaaaaacaatacattttccttttcctcttgagctttctaaattatgtttaacagttgaagca
s panTro5.chr6              28991579 105 + 175400573 gaagaaagaacatggtaagc---aaaaaaaaaaaa-aaaaaaaaaggtaaaaacaatacattttccttttcctcttgagctttctaaattatgtttaacagttgaagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29235281 104 + 173848474 gaagaaagaacatggtaagc----aaaaaaaaaaa-aaaaaaaaaggtaaaaacaatacattttccttttcctcttgagctttctaaattatgtttaacagttgaagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5026071 108 +   6154872 gaagaaagaacatggtaagcaaaaaaaaaaaaaaa-aaaaaaaaaggtaaaaacaatacattttccttttcctcttgagctttctaaattatgtttaacagttgaagca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74028182 101 + 122973662 gaagaaagaacatggtaagc-------aaaaaaaa-aaaaaaattggtaaaaacaatacattttccttttcctcttgagctttctaaattatgtttaacacttgaagca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29171439  96 + 172585720 gaagaaagaacatggtaagc------------aag-aaaaaaatgggtaaaaacaatacattttccttttcctcttgagctttctaaattatgtttaacagttgaagca
i rheMac8.chr4             C 0 I 38
s macFas5.chr4              28861467  96 - 170955103 gaagaaagaacatggtaagc------------aag-aaaaaaatgggtaaaaacaatacattttccttttcctcttgagctttctaaattatgtttaacagttgaagca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1833575  96 -   2996164 gaagaaagaacatgataagc------------aag-aaaaaaatgggtaaaaacaatacatttgccttttcctcttgagctttctaaattatgtttaacagttgaagca
i macNem1.NW_012011356v1   C 0 I 38
s cerAty1.NW_012001495v1     1728761  97 -   2157725 gaagaaagaacatgataagc------------gagaaaaaaaatgggtaaaaacaatacattttccttttcctcttgagctttctaaattatgtttaacagttgaagca
i cerAty1.NW_012001495v1   C 0 I 38
s chlSab2.chr17             28178034  95 -  71996105 gaagaaagaacatggtaa--------------gaaaaaaaaaatgggtaaaaacaatacattttccttttcctcttgagctttctaaattatgtttaatagttgaagca
i chlSab2.chr17            C 0 I 38
s manLeu1.NW_012104165v1     1823376  97 +   2316924 gaagaaagaacatgataagc------------gagaaaaaaaatgggtaaaaacaatacattttccttttcctcttgagctttctaaattatgtttaacagttgaagca
i manLeu1.NW_012104165v1   C 0 I 38
s colAng1.NW_012115566v1     1712786  96 -   3067355 gaagaaagaacatgataagc------------aag-aaaaaaatgggtaaaaacaatacattttccttttcctcttgagctttctaaattatgtttaacagttgaagca
i colAng1.NW_012115566v1   C 0 I 42
e saiBol1.JH378348            128038 2368 -    375362 I
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       77808 2612 -    285216 I
e cebCap1.NW_016108108v1      131283 3068 -    373274 I
e calJac3.chr4             171309213 2031 - 171630274 I

a score=2080.000000
s hg38.chr6_GL000254v2_alt     14655  8 +   4827813 ------aaaag----tgt--------------------
s panTro5.chr6              28991684  8 + 175400573 ------aaaag----tgt--------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29235385  8 + 173848474 ------aaaag----tgt--------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5026179  8 +   6154872 ------aaaag----tgt--------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74028283  8 + 122973662 ------aaaag----tgt--------------------
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28861563 38 - 170955103 taatttagaaGGTCATGTTACACCTTCTAACATATTAG
i macFas5.chr4             C 0 C 0
e saiBol1.JH378348            128038 2368 -    375362 I
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       77808 2612 -    285216 I
e cebCap1.NW_016108108v1      131283 3068 -    373274 I
e calJac3.chr4             171309213 2031 - 171630274 I
e colAng1.NW_012115566v1     1712882 42 -   3067355 I
e manLeu1.NW_012104165v1     1823473 38 +   2316924 I
e chlSab2.chr17             28178129 38 -  71996105 I
e cerAty1.NW_012001495v1     1728858 38 -   2157725 I
e macNem1.NW_012011356v1     1833671 38 -   2996164 I
e rheMac8.chr4              29171535 38 + 172585720 I

a score=20515.000000
s hg38.chr6_GL000254v2_alt     14663 4 +   4827813 aaca
s panTro5.chr6              28991692 4 + 175400573 aaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29235393 4 + 173848474 aaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5026187 4 +   6154872 aaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74028291 4 + 122973662 aaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29171573 4 + 172585720 aaca
i rheMac8.chr4             I 38 C 0
s macFas5.chr4              28861601 4 - 170955103 AACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1833709 4 -   2996164 AACA
i macNem1.NW_012011356v1   I 38 C 0
s cerAty1.NW_012001495v1     1728896 4 -   2157725 aaca
i cerAty1.NW_012001495v1   I 38 C 0
s chlSab2.chr17             28178167 4 -  71996105 aaca
i chlSab2.chr17            I 38 C 0
s manLeu1.NW_012104165v1     1823511 4 +   2316924 AACA
i manLeu1.NW_012104165v1   I 38 C 0
e saiBol1.JH378348            128038 2368 -    375362 I
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       77808 2612 -    285216 I
e cebCap1.NW_016108108v1      131283 3068 -    373274 I
e calJac3.chr4             171309213 2031 - 171630274 I
e colAng1.NW_012115566v1     1712882 42 -   3067355 I

a score=689954.000000
s hg38.chr6_GL000254v2_alt     14667 132 +   4827813 tgaccgggcacggtggctcaggcatgtaatcctaccactttgggaggccaaggtgggcagatcatgagatgaggagatcaagaccagcctgactaacatggtgaaaccccgtctcta-ctaaaaatac-aaaaa
s panTro5.chr6              28991696 132 + 175400573 tgaccgggcacggtggctcaggcatgtaatcctaccactttgggaggccaaggtgggcagatcatgagatgaggagatcaagaccagcctgactaacatggtgaaaccccgtctcta-ctaaaaatac-aaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29235397 132 + 173848474 tgaccgggcacggtggctcaggcatgtaatcctaccactttgggaggccaaggtgggcagatcatgagatgaggagatcaagaccagcctgactaacatggtgaaaccccgtctcta-ctaaaaatac-aaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5026191 133 +   6154872 agaccgggcacggtggctcaggcatgtaatcctaccactttgggaggccaagttgggcagatcatgagatgaggagatcaagaccagcctgactaacatggtgaaaccccgtctcta-ctaaaaatacaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74028295 127 + 122973662 tgactgggcacggtggctcaggcctctgtt-----cactttgggaggccaaggcgggcagatcatgaggtgaggatatcaagaccaacctgactaacatggtgaaaccccctctcta-ctaaaaatac-aaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29171577 131 + 172585720 tgaccaggcaccatggctcatgcctgtaatcttaccactttgggagaccaaggccagcagatcatgaggtgaggagatcaagaccagcctggctaacatggtgaaa-cccgtctcta-ctaaaaatac-aaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28861605 131 - 170955103 Tgaccaggcaccatggctcatgcctgtaatcttaccactttgggagaccaaggccagcagatcatgaggtgaggagatcaagaccagcctggctaacatggtgaaa-cccgtctcta-ctaaaaatac-aaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1833713 132 -   2996164 Tgaccaggcaccatggctcacgcctgtaatcttaccactttgggagaccaaggccagcagatcatgaggtgaggagatcaagaccagcctggctaacatggtgaaa-cccgtctctacctaacaatac-aaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1728900 131 -   2157725 tgaccaggcaccatggctcatgcctgtaatcttaccactttgggagaccaaggccagcagatcatgaggtgaggagatcaagaccagcctggctaacatggtgtaa-cccgtctcta-ctaaaaatac-aaaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28178171 131 -  71996105 tgaccaggcaccatggctcatgcctgtaatcttaccactttgggagaccaaggccagcagatcatgaggtgaggagatcaagaccagcctggctaacatggtgaaa-cccatctcta-ataaaaatac-aaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1823515 131 +   2316924 Tgaccaggcaccatggctcatgcctgtaatcttaccactttgggagaccaaggccagcagatcatgaggtgaggagatcaagaccagcctggctaacatggtgaaa-cccgtctcta-ctaaaaatac-aaaaa
i manLeu1.NW_012104165v1   C 0 I 1716
s colAng1.NW_012115566v1     1712924 130 -   3067355 tgaccaggcaccgtggctcatgcctgtaatcttaccacttt-ggaggccaaggccagcagatcatgaggtgaggagatcaagaccagcttggctaacatggtgaaa-cctgtctcta-ctaaaaatac-aaaaa
i colAng1.NW_012115566v1   I 42 C 0
e saiBol1.JH378348            128038 2368 -    375362 I
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       77808 2612 -    285216 I
e cebCap1.NW_016108108v1      131283 3068 -    373274 I
e calJac3.chr4             171309213 2031 - 171630274 I

a score=311911.000000
s hg38.chr6_GL000254v2_alt     14799 73 +   4827813 attagctgggcatg-gtggcacacacctg-tagtcccagctactcgaga--ggctgaggagggagaatcacttgaac
s panTro5.chr6              28991828 73 + 175400573 attagctgggcatg-gtggcacacacctg-tagtcccagctactcgaga--ggctgaggagggagaatcacttgaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29235529 73 + 173848474 attagctgggcatg-gtggcacacacctg-tagtcccagctactcgaga--ggctgaggagggagaatcacttgaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5026324 73 +   6154872 attagatgggcatg-gtggcacacacctg-tagtcccagctactcgaga--ggctgaggagggagaatcacttgaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74028422 73 + 122973662 attaactgggcgtg-gtggcacacacctg-tagtcccagctactcggga--ggccgaggcgggagaatcacttgaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29171708 73 + 172585720 attaactgggcgtg-gtggcacacacctg-tagtcccaggtacttggga--ggctgaggcgggagaatcatttgaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28861736 73 - 170955103 attaactgggcgtg-gtggcacacacctg-tagtcccaggtacttggga--ggctgaggcgggagaatcacttgaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1833845 75 -   2996164 ataactgaggcgtgcgtggcaca-acctgttagtcccagctacttgggacggcttgaggcgggag-atcacttgaac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1729031 73 -   2157725 attaactgggcgtg-gtggcacacacctg-tagtcccagctacttggga--ggttgaggtaggagaatcacttgaac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28178302 73 -  71996105 attaactgggcatg-gtggcacacacctg-taatcccagctacttggga--ggctgaggtgggagaatcacttgaat
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1713054 73 -   3067355 attaactgggtgtg-gtggcacacacctg-tagtcccagctacttggga--ggctgaggcaggagaatcacttgaac
i colAng1.NW_012115566v1   C 0 I 14025
e saiBol1.JH378348            128038 2368 -    375362 I
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       77808 2612 -    285216 I
e cebCap1.NW_016108108v1      131283 3068 -    373274 I
e calJac3.chr4             171309213 2031 - 171630274 I
e manLeu1.NW_012104165v1     1823646 1716 +   2316924 I

a score=2540676.000000
s hg38.chr6_GL000254v2_alt     14872 728 +   4827813 c--agggaaacggaggttgcagcgagccaa-gatcacgccact---acactc--aggcctgggcaac-agagtgagacaatgtctc--aaaaaaaaaaaaaaaaaaaagaaagaaaga---aaaa-----agtataacatg-gttcgatgtggtt--cgaa-atgtatgtagaagaaata-atttaagacaattata--ttacaagtaggagaggcaaagtgacaaa----aaggtaaagatgacacacatcactttaactga-taaaataatgataccagtacacagtgataaattaaataaat---atgtaatactcagacaaatcactaaaagagttatataaagagatcatttaaaaacactacagataggctgggcacagtggctcacacctgtaatgccagcactttgggaggctgagggggatcacctgtggtcaggaattcgagaccagcctggccaacatggtgaaaccctgtctctactaaaactacaaaaattagctgggcatggtggcgcatgcctgtaatcccagctacttgggaggctgaggcaggag--aaaaaaaaaatcaaaaaaacaaaaccacacacac--acaaaaacgctacagataaatgacaatgaaattctaaaaaagtatactagtagtccacaaagaaggcttta------------ataaataaatacatacatacatacatatccccagaaaatggcagtaacagggtacaaatagaaaacaaactgctagatttcagccctaacatatc
s panTro5.chr6              28991901 730 + 175400573 c--agggaaacggaggttgcagcgagccaa-gatcacgccact---acactc--aggcctgggcaac-agagtgagacaatgtctc---aaaaaaaaaaagaaagaaagaaagaaaga---aaaa-----agtataacatg-gtccgatgtggtt--cgaa-atgtatgtagaagaaata-atttaagacaattata--ttacaagtaggagaggcaaagtgacaaa----aaggtaaagatgacacacgtcactttaactga-taaaataatgataccagtacacagtgataaattaaataaatatcatgtaatactcagacaaatcactaaaagagttatataaagagatcatttaaaaacactacagataggctgggcacagtggctcacacctgtaatgccagcactttgggaggctgagggggatcacctgtggtcaggaattcgagaccagcctggccaacatggtgaaaccctgtctctactaaaactacaaaaattagctgggcatggtggcgcatgcctgtaatcccagctacttgggaggctgaggcaggag--aaaaaaaaaatcaaaaaaacaaaaccacacacac--acacaaacgctacagataaatgacaatgaaattctaaaaaagtatactagtagtccacaaagaaggcttta------------ataaatacatacatacatacatacatatccccagaaaatggcagtaacagggtacaaatagaaaacaaactgctagatttaagccctaacatatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29235602 732 + 173848474 c--agggaaacggaggttgcagcgagccaa-gatcacgccact---acactc--aggcctgggcaac-agagtgagacaatgtctc---aaaaaaaaaaagaaagaaagaaagaaagaaagaaaa-----agtataacatg-gtccgatgtggtt--cgaa-atgtatgtagaagaaata-atttaagacaattata--ttacaagtaggagaggcaaagtgacaaa----aaggtaaagatgacacacgtcactttaactga-taaaataatgataccagtacacagtgataaattaaataaatatcatgtaatactcagacaaatcactaaaagagttatataaagagatcatttaaaaacactacagataggctgggcacagtggctcacacctgtaatgccagcactttgggaggctgagggggatcacctgtggtcaggaattcgagaccagcctggccaacatggtgaaaccctgtctctactaaaactacaaaaattagctgggcatggtggcgcatgcctgtaatcccagctacttgggaggctgaggcaggag---aaaaaaaaatcaaaaaaacaaaaccacacacac--acacaaacgctacagataaatgacaatgaaattctaaaaaagtatactagtagtccacaaagaaggcttta------------ataaatacatacatacatacatacatatccccagaaaatggcagtaacagggtacaaatagaaaacaaactgctagatttaagccctaacatatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5026397 745 +   6154872 c--agggaaacggaggttgcagcgagccaa-gatcacgccact---acactc--aggcctgggcaac-agagtgagacaatgtctcaaaaaaaaaaaaaagaaagaaagaaagaaaga---aaaa-----agtataacatg-gtccgatgtggtt--cgaa-atgtatgtagaagaaata-atttaagacaattata--ttacaagtgggagaggcaaagtgacaaa----aaggtaaagatgacacacgtcactttaactga-taaaataatgataccagtacacagtgataaattaaataaatatcatgtaatactcagacaaatcactaaaagagttatataaagagatcatttgaaaacactacagataggctggacacagtggctcacagctgtaatgccagcactttgggaggctgagggggatcacctgtggtcaggaattcgagaccagcctggccaacatggtgaaaccccgtctctaccaaaactacaaaaattagctgggcatggtggcgcatgcctgtaatcccagctacttgggaggctgaggcaggag--aaaaaaaaaatcaaaaaaacaaaaccacacacac--tcaaaaacgctacagataaatgacaatgaaattctaaaaaagtatactagtagtccacaaagaaggctttaatacatacatacatacatacatacatacatacatacatatccccagaaaatggcagtaacagggtacaaatagaaaacaaactgctagatttaagccctaacaaatc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74028495 717 + 122973662 c--agggaaacagaggttgcagcgagccaa-gatcacgccact---acactc--aggcctgggcaac-agagtgagacactgtctc---aaaaaaaaaaa---------------------aaaa-----agtataacatg-gtccgatgtggtt--ctaa-atgtatgtagaagaaata-atttaagacaattata--ttacaagtgagagaggcaaagtgacaaaaaggaaggcaaagatgacacacgtcactttaactga-taaaataatgataccagtacaccgtgataaattaaataaatatcatgtaatactcagacaaatcactaaaagagttatataaatagatcatttaaaaacactacagataggctgggcacggtggctcacacctgtaatgccagcactttgggaggctgaggaggatcacctgaggtcaggaatttgagaccagcctggccaacatggcgaaaccctgtctctactaaaactacaaagattagctgggtatggtggcgcatgcctgtaatcccagctacttgggaggctgaggcaggagaaaaaaaaaaaaaaaaaaaaacaaaaccacacacac--aaaaaaacgctacagataaatgacaatgaaattct-aaaaagtatacaagtagtccacaaagaaggcttta------------ataaataaataaatacatacatacatatccccagaaaatggcagtaacagggtacaaatagaaaacaaactgctagatttaagccctaacatatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29171781 717 + 172585720 c--cgggaaatggaggttgcagcaagccaa-gatcacgccact---acactc--aggcctgggtgac-agagtgagacactgtctc---aaaaaaaaaaatatata---------------tata-----tatataacatg-gtccaatgtagtt--ctaa-atgtatatagaagaaata-atttaagacaattata--ttacaagtgggagaggtaaagtgacaaaaagggaggtaaagatgagacacaccactttaactga-taaaataatgataccagtacacagtgataaattaaataaatattttgtaatactcagacaaatcactaaaagagttatataaagagataatttaaaaacactacacataggctgggcacagtggctcacacctgtaatgccagcactttgggaggctgagggggatcacctgaggtcaggaatttgagaccagcctggccaacatggcaaaaccctatgtctactaaaactacaaaaattagctgggcatggtggcacatgcctgtagtcccagctacttggaaggctgaggcaggag---gaaaaaaaaacaaaaaaacaaaaccacacacaca-aaaaaaacactacagataaatgacaatgaaattct-acaaagtatacaagtagtccataaaggagacttta----------------ataaataaatacatacatacatatcctaagaaaatggcagtaacagggtacaaatagaaaacaaactgctagatttaaaccctaacatatc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28861809 716 - 170955103 c--cgggaaatggaggttgcagcaagccaa-gatcacgccact---acactc--aggcctgggtgac-agagtgagacactgtctc----aaaaaaaaaaTATATA---------------TATA-----TAtataacatg-gtccaatgtagtt--ctaa-atgtatatagaagaaata-atttaagacaattata--ttacaagtgggagaggtaaagtgacaaaaagggaggtaaagatgagacacaccactttaactga-taaaataatgataccagtacacagtgataaattaaataaatattttgtaatactcagacaaatcactaaaagagttatataaagagataatttaaaaacactacacataggctgggcacagtggctcacacctgtaatgccagcactttgggaggctgagggggatcacctgaggtcaggaatttgagaccagcctggccaacatggcaaaaccctatgtctactaaaactacaaaaattagctgggcatggtggcacatgcctgtagtcccagctacttggaaggctgaggcaggag---aaaaaaaaaacaaaaaaacaaaaccacacacaca-aaaaaaacactacagataaatgacaatgaaattct-aaaaagtatacaagtagtccacaaaggagacttta----------------ataaataaatacatacatacatatcctaagaaaatggcagtaacagggtacaaatagaaaacaaactgctagatttaaaccctaacatatc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1833920 733 -   2996164 ccgcgggaaatggaggttagcgcaagccaaggatcacgccactctaacactccgaggcctgggtgacgaggaggagacactgtctc----aaaaaaaaaaaaaaaa---------------aaaaaaaaGTATA-AACATGCgtccaatgtagttgcctaagatgtatgtagaagaaatagatttaagacaattataattagcaagtggagggagcaaagtgacaaaaagggaggtaaagatgag-cacaccacgtt---tgagtaaaataatgataccagtacacagtgataaattaaataaatatcttgtaatactcagacaaatcactaaaagagttatataaagagataatttaaaaacactacacataggctgggcacagtggctcacacctgtaatgccagcactttgggaggctgagggggatcacctgaggtcaggaatttgagaccagcctggccaacatggcaaaaccctatgtctactaaaactacaaaaattagctgggcatggtggcacatgcctgtagtcccagctacttggaaggctgaggcaggag---aaAAAAAAAACaaaaaaacaaaaccacacacaca-aaaaaaacactacagataaatgacaatgaaattct-aaaaagtatacaagtagtccataaaggagacttta----------------ataaataaatacatacatacatatcctaagaaaatggcagtaacagggtacaaatagaaaacaaactgctagatttaaaccctaacatatc
i macNem1.NW_012011356v1   C 0 M 1243
s cerAty1.NW_012001495v1     1729104 710 -   2157725 c--tgggaaatggaggttgcagcaagccaa-gatcacgccact---acactc--aggcctgggtgac-agagtgagacactgtctc---aaaaaaaaaaaaaaaaa---------------aaaa-----agtataacatg-gtccaatgtagtt--ctaa-atgtatgtagaagaaata-atttaagacaattata--ttacaagtgggagaggcaaagtgacaaaaagggaggtaaagatgagacacaccactttaactga-taaaataatgataccagtacatagtgataaat----taaatatcatgtaatacttagacaaatcactaaaagagttatataaagagatcgtttaaaaacactacacataagctgggcacagtgggtcacacctgtaatgccagaactttgggaggctgagggggatcacctgaggtcaggaatttgagaccagcctggccaacatgacaaaaccctatgtctactaaaactacaaaaattagctgggcatggtggtgcatgcctgtaatcacagctacttggaaggttgaggcaggag---aaaaaaaaaaaaaaaaaaaacacacacacacacacaaaaaaacactacagataaatgacaatgaaattct-aaaaagtatacaagtagtctataaagaaaacttt--------------------aataaatacatacatacataccctcagaaaatggcagtaacagggtacaaatagaaaacaaactgctagatttaagccctaacatatc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28178375 707 -  71996105 c--cgggaaatggaggttgcagcaagccaa-gatcatgccact---atactc--aggcctgggtgac-agagtgagacactgtcac---aaaaaaataaaaaaata---------------aaaa-----aa---aacatg-gtccaatgtagtt--ctaa-acatatgtagaagaaata-atttaagacaattata--ttacaagtgggagaggcaaagtgacaaaaagggaggtaaagatgagacacactactttaactaa-taaaataatgacaccagtacacagtgataaattaaataaatgtcatgtaatactcagacaaatcactaaaagagttatataaagagatcatttaaaaacactacacataggctgggcacagtggctcacacctgtaatgccagaactttggaaggctgagggggatcacctgaggtcaggaattcgagaccagcctggccaacatgacaaaaccctatgtctactaaaactacaaaaattagctgggcatggtgtcacatgcctgtagtcacagttatttggaaggttgaggcaggag---GAAAAAAAAAAAAAAAA------CCACacacac--acaaaaatactacagataaatgacaatgaaattct-aaaaagtatacaactagtccataaagaagacttta----------------ataaataaatacatacatacatatcctcagaaaatggcagtaacaggatacaaatagaaaacaaactgctagatttaagccctaacatatc
i chlSab2.chr17            C 0 C 0
e saiBol1.JH378348            128038 2368 -    375362 I
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       77808 2612 -    285216 I
e cebCap1.NW_016108108v1      131283 3068 -    373274 I
e calJac3.chr4             171309213 2031 - 171630274 I
e colAng1.NW_012115566v1     1713127 14025 -   3067355 I
e manLeu1.NW_012104165v1     1823646 1716 +   2316924 I

a score=2658383.000000
s hg38.chr6_GL000254v2_alt     15600 878 +   4827813 aataattacattaaatgtaaatggtcgaaaggtaccaattaaaagacagagattaacagagtagattagaaaatataatccaactacatgctgtctacaagaaacttatttcaaatataattatacatacaggttgaaattaagcatat-aaaa--atatataacattcaaatgttaattaaaagaaagcaaaagtgagtatattaatataatatgaac----tttatttatttatcttttttctttgagatggagtttcactcttgtcactcagactggagtgcaatggcgcgatctctgctcactgcaacctctgcctccagggttccagtgattctcttgcctcagcctcccaagcagctggaattacaggcacgtaccaccatgactggctaatttttgtatttttagtagagatggggtttcactatgttggtcaggctggtctcaaactcctgacctcaggtgatctacccacctcagcatcccacggtgctgggattacaggcgtgagctaccacgtctggcctaatataagctttagaacaaagaaaaattttaaaaatccaccaagaaggcataacaatcctaaatatgtataaaccaaacagagttg-aaaat-atgtaaagaaaaaaagaattttt-aaaaaatagacaaatccacaattacattagagacttcaacacttctctcataataatcgatagaacaactaaacagaaaatcagcaaggatgttgaagaactcaaaatcatcttcagctaacagaattcagtcaacatttaaagaagactccacacaagaaaagcagaacacacagaacacaggtcaagatggaacatattctgggccataaaacaaacctcaaatttaaaagaattaac
s panTro5.chr6              28992631 878 + 175400573 aataattacattaaatgtaaatggtggaaaggtaccaattaaaagacagagattaacagagtagattagaaaatataatccaactacatgctgtctacaagaaacttatttcaaatataattatacatacaggttgaaattaagcatat-aaaa--atatataacattcaaatgttaattaaaagaaagcaaaagtgagtatattaatataatatgaac----tttatttatttatcttttttctttgagatagagtttcactcttgtcactcagactggagtgcaatggcgcgatctctgctcactgcaacctctgcctccagggttccagtgattctcttgcctcagcctcccaagcagctggaattacaggcatgtaccaccatgaccggctaatttttgtatttttagtagagatggggtttcactatgttggccaggcttgtctcaaactcctgacctcaggtgatctacccacctcagcatcccacggtgctgggattacaggcgtgagctaccacgtctggcctaatataagctttagaacaaagaaaaattttaaaaatccaccaagaaggcataacaatcctaaatatgtataaaccaaacagagttg-aaaat-atgtaaagaaaaaaagaattttt-aaaaaatagacaaatccacaattacattagagacttcaacacttctctcataataatcgatagaacaactaaacagaaaatcagcaaggatgttgaagaactcaaaatcatcttcagctaacagaattcagtcaacatttaaagaagactccacacaagaaaagcagaacacacagaacacaggtcaagatggaacatatcctgggccataaaacaaacctcaaatttaaaagaattaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29236334 876 + 173848474 aataattacattaaatgtaaatggtggaaaggtaccaattaaaagacagagattaacacagtagattagaaaatataatccaactacatgctgtctacaagaaacttatttcaaatataattatacatacaggttgaaattaagcatat-aaaa--atatataacattcaaatgttaattaaaagaaagcaaaagtgagtatattaatataatatgaac----tttatttatttatcttttttctttgagatagagtttcactcttgtcactcagactggagtgcaatggcgcgatctctgctcactgcaacctctgcctccagggttccagtgattctcttgcctcagcctcccaagcagctggaattacaggcacgtaccaccatgaccggctaatttttgtatttttagtagagatggggtttcactatgttggccaggcttgtctcaaactcctgacctcaggtgatctacccacctcagcatcccacggtgctgggattacaggcgtgagctaccacgtctggcctaatataagctttagaacaaag-aaaattttaaaaatccaccaagaaggcataacaatcctaaatatgtataaaccaaacagagttg-aaaat-atgtaaag-aaaaaagaatttta-aaaaaatagacaaatccacaattacattagagacttcaacacttctctcataataatcgatagaacaactaaacagaaaatcagcaaggatgttgaagaactcaaaatcatcttcagctaacagaattcagtcaacatttaaagaagactccacacaagaaaagcagaacacacagaacacaggtcaagatggaacatatcctgggccataaaacaaacctcaaatttaaaagaattaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5027142 884 +   6154872 aataattacattaaatgtaaatggtctaaaggtaccaattaaaagacagagattaacggagtagattagaaaatataatccaactacatgctgtctacaagaaacttatttcaaatataattatacatacgggttgaaattaagagtataaaaa--atatataacattcaaatgttaattaaaagaaagcaaaagtgagtatattaatataatatgaactttatttatttatttatcttttttctttgagatggagtttcactcttgtcactcagactggagtgcaatggcgcaatctctgctcactgcaacctctgcctccagggttccagtgattctcttgcctcagcctcccaagcagctggaattacaggcacgtaccaccatgactggctaatttttgtatttttagtagagatggggtttcactatgttggccaggctggtctcaaactcctgacctcaggtgatctacccacctcagcatcccacagtgctgggattacaggtgtgagctaccacgtctggcctaatataagctttagaacaaagaaaaattttaaaaatccaccaagaaggcataacaatcctaaatatgtataaaccaaacagagttg-aaaat-atgtaaagaaaaaaagaatttttaaaaaaatagacaaatccacaattacattagagacttcaacacttctctcataataatctatagaacaactaaacagaaaatcagcaaggatgttgaagaactcaaaatcatcttcagctaacagaattcagtcaacatttaaagaagactccacacaagaaaagcagaacacacagaacacaggtcaagatggaacatatcctgggccataaaacaaacctcaaatttaaaagaattaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74029212 879 + 122973662 aataattacatcaaatgtaaatggtctaaaggtaccaattaaaagacagagattaacagagtagattagaaaatataatccaactacatgctgtctacaagaaacttatttcaaatgtaattatacagacaggttgaaattaagagtat-aaaa--atatataacattgaaatgttaattaaaagaaagcaaaagtgagtatattaatataatatgaac----tttatttatttatcttttttttttgagatggagtttcactcttgtcactcagactggagtgcaatggcacaatctctgctcactgcaacctctgcctccagggttcccgttattctctgtcctcagcctcccaagtatttggaattacaggcatgtaccaccacggctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatctacccacctcggcatcccacggtgctgggattacaggcgtgagttaccacgtctggcctaatataagctttagaacaaagaaaaaatttaaaaatccaccaagaaggcataacaatcctaaatatgtataaaccaaacagagttg-aaaataacgtaaagaaaaaaagaatttta-aaaaaatagacaaatccacaattacattagagacttcaacacttctctcataataatcaatagaacgactaaacagaaaatcagcaaggatattgaaaaactcaaaatcatcttcagctaacagaagtcagtcaacatttaaagaagactccacacaagaaaagcagaacacacagaacacaggtcaagatagaacatatcctgggccataaaacaaacctcaaatttaaaagaattaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29172498 867 + 172585720 aataattacattaaatgtaaatggtctaaaggtaccaattaaaagacagagattaacagcgtagattagaaaatataatccaactacatgttgtctacaagaaacttatttcaaatataattttacagacaggttgaaattaagagtat-aaaa--atatataacattcaaatgttaattaaaagaaagcaaaagtgagtttattaatataatatgaac----tttatttatct-ttttttttttttgagatggagtttcactcttgtcactcaggctggagtgcaatggcgtgatctctgctcactgcaacctctgcgcccagggttccagtgattctcttgcctaagcctcccaagtagctggaattacaggcatgtgccaccaccactggctaatttttgtatttttagtagagacggagtttcactatgttggccaggctggtctcgaactcctgaccttaggtgatctacccacctcagcatcccatggtgctgggattacaggtgtgagctaccacgtctggcctaatataaactttagaagaaagaaaaattttaaaaacccaccaaaaaggcgtaacaatcctaagtatgtataaaccaaagagagttgcaaaat-atgtaaagaaaaaaagaattt---aaaaaatagacaaatccacaattacattagagacttcaacacttctctcataataatcgatagaacaactaaacagaaaattagcaaggatattgaagaactcaaaatcatcttcagctaacagaattcagttaacatttaaagaagagtccacacaagaaaagcagaacacatag---------caagatagaacatatcctgggccgtaaaacaaacctcagatttaaaagaattaaC
i rheMac8.chr4             C 0 I 14
s macFas5.chr4              28862525 867 - 170955103 aataattacattaaatgtaaatggtctaaaggtaccaattaaaagacagagattaacagcgtagattagaaaatataatccaactacatgttgtctacaagaaacttatttcaaatataattttacagacaggttgaaattaagagtat-aaaa--atatataacattcaaatgttaattaaaagaaagcaaaagtgagtttattaatataatatgaac----tttatttatct-ttttttttttttgagatggagtttcactcttgtcactcaggctggagtgcaatggcgtgatctctgctcactgcaacctctgcggccagggttccagtgattctcttgcctaagcctcccaagtagctggaattacaggcatgtgccaccaccactggctaatttttgtatttttagtagagacggagtttcactatgttggccaggctggtcttgaactcctgaccttaggtgatctacccacctcagcatcccatggtgctgggattacaggtgtgagctaccacgtctggcctaatataaactttagaagaaagaaaaattttaaaaacccaccaaaaaggcgtaacaatcctaagtatgtataaaccaaagagagttgcaaaat-atgtaaagaaaaaaagaattt---aaaaaatagacaaatccacaattacattagagacttcaacacttctctcataataatcgatagaacaactaaacagaaaatcagcaaggatattgaagaactcaaaatcatcttcagctaacagaattcagttaacatttaaagaagagtccacacaagaaaagcagaacacatag---------caagatagaacatatcctgggccgtaaaacaaacctcagatttaaaagaattaaC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1729814 865 -   2157725 aataattacattaaatgtaaatggtctaaaggtaccagttaaaagacagagattaacagcatagattagaaaatataatccaactacatgttgtctataagaaacttatttcaaatataattttacagacaggttgaaattaagagtat-aaaaatatatataacattcaaatgttaattaaaagaaagcaaaagtgagtatattaatataatatgaac----tttatctatc-----tttttttttgagatggagtttcactcttgtcactcaggctggagtgcaatggcgtgatctctgctcactgcaacctctgcgcccaggattccagtgattttcttgcctcagcctcccaagtagctggaattacaggcatgtgccaccaccactggctaatttttgtatttttagtagagacggggtttcaccatgttggccaggctggtctcgaactcctgaccgtaggtgatctacctgcctcagcatcccacggtgctgggattacaggtgtgagctaccatgtctggcctaatataaacttcagaacaaagaaaaaatttaaaaacccaccaaaaatgtgtaacaatcctaaatatgtataaaccaaagaaagttgcaaaat-atgtaaagaaaaaaagaattt---aaaaaatagacaaatccacaattacattagagacttcaacacttctctcgtaataatcgatagaacaactaaacagaaaatcagcaaggatattgaagaactcaaaatcatcttcagctaacagaattcagttaacatttaaagaagagtccacacaagaaaagcagaacacatag---------caagatagaacatatcctgggccgtaaaacaaacctcagatttaaaagaattaaC
i cerAty1.NW_012001495v1   C 0 I 10
s chlSab2.chr17             28179082 864 -  71996105 aataattacattaaacgtaaatggtctaaaggtaccaattaaaagacagagattaacagtgtagattagaaaatataatccaactacatgttgtctacaagaaacttatttgaaatataattttacagacaggttgaaattaagagtat-aaaa--atacataacattcaaatgctaattaaaagaaagcaaaagtgagtatattaatataatgtgaac----tttatttatc----ttttttttttgagatggagtttcactcttgtcactcaggctggagtacaatggcgtgatctctgctcactgcaacctctgcgcccagggttccagtgattctcttgcctcagcctcccaagtagctggaattacaggaatgtgccaccactactggctaatttttgtatttttagtagagatggggttttaccatgttggccaggctggtctcgaactcctgaccataggtgatctacctgcctcagcatcccagggtgctgggattacaggtgtgagctaccatgtctggcctaatataaactttagaacaaagaaaaattttaaaaacccaccaaaaatgtgtaacaatcctaaatatgtataaaccaaagaaagttgcaaaat-atgtgaagaaaaaaagaatta---aaaaaatagacaaatccacaattacattagagacttcaacacttctctcgtaataattgatagaacaactaaacagaaaatcagcaaggatattgaagaactcaaaatcatcttcaactaacagaattcagttaacatttaaagaagattccacacaagaaaagcagaacacatag---------caagatagaacatatcctgggctgtaaaacaagcctccgatttaaaagaattaaC
i chlSab2.chr17            C 0 I 15
e saiBol1.JH378348            128038 2368 -    375362 I
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       77808 2612 -    285216 I
e cebCap1.NW_016108108v1      131283 3068 -    373274 I
e calJac3.chr4             171309213 2031 - 171630274 I
e colAng1.NW_012115566v1     1713127 14025 -   3067355 I
e manLeu1.NW_012104165v1     1823646 1716 +   2316924 I
e macNem1.NW_012011356v1     1834653 1243 -   2996164 M

a score=9478.000000
s hg38.chr6_GL000254v2_alt     16478 9 +   4827813 tcacacagt
s panTro5.chr6              28993509 9 + 175400573 tcacacagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29237210 9 + 173848474 tcacacagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5028026 9 +   6154872 tcacacagt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74030091 9 + 122973662 tcatacagt
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28863392 9 - 170955103 GCATATGGT
i macFas5.chr4             C 0 I 5
e saiBol1.JH378348            128038 2368 -    375362 I
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       77808 2612 -    285216 I
e cebCap1.NW_016108108v1      131283 3068 -    373274 I
e calJac3.chr4             171309213 2031 - 171630274 I
e colAng1.NW_012115566v1     1713127 14025 -   3067355 I
e manLeu1.NW_012104165v1     1823646 1716 +   2316924 I
e chlSab2.chr17             28179946 15 -  71996105 I
e cerAty1.NW_012001495v1     1730679 10 -   2157725 I
e macNem1.NW_012011356v1     1834653 1243 -   2996164 M
e rheMac8.chr4              29173365 14 + 172585720 I

a score=37660.000000
s hg38.chr6_GL000254v2_alt     16487 40 +   4827813 atgatccctgaccacaatgaaatcaaactaaaagtcaatc
s panTro5.chr6              28993518 40 + 175400573 atgatccctgaccacaatgaaatcaaactaaaagtcaatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29237219 40 + 173848474 atgatccctgaccacaatgaaatcaaactaaaagtcaatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5028035 40 +   6154872 atgatccctgaccacaatgaaatcaaactaaaagtcaatc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74030100 40 + 122973662 atgatccctgaccacaatgaaatcaaactaaaagtcaatC
i nomLeu3.chr1a            C 0 I 243
e saiBol1.JH378348            128038 2368 -    375362 I
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       77808 2612 -    285216 I
e cebCap1.NW_016108108v1      131283 3068 -    373274 I
e calJac3.chr4             171309213 2031 - 171630274 I
e colAng1.NW_012115566v1     1713127 14025 -   3067355 I
e manLeu1.NW_012104165v1     1823646 1716 +   2316924 I
e chlSab2.chr17             28179946 15 -  71996105 I
e cerAty1.NW_012001495v1     1730679 10 -   2157725 I
e macNem1.NW_012011356v1     1834653 1243 -   2996164 M
e macFas5.chr4              28863401  5 - 170955103 I
e rheMac8.chr4              29173365 14 + 172585720 I

a score=64980.000000
s hg38.chr6_GL000254v2_alt     16527 72 +   4827813 acagaaagacaacagaagaacatccaaacacttggaaaatgaacaacacactactaaatagtacacaggaca
s panTro5.chr6              28993558 72 + 175400573 acagaaagacaacagaagaacatccaaacacttggaaaatgaacaacacactactaaatagtacacaggaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29237259 72 + 173848474 acagaaagacaacagaagaacatccaaacacttggaaaatgaacaacacactactaaatagtacacaggaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5028075 72 +   6154872 acagaaagacagcagaagaacatccaaacacttggaaaatgaactacacactactaaatagtacacaggaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74030383 72 + 122973662 acagaaagacaacagaaaaatatccaaacacttggaaaatgaacaacacgctactaaatagtacacaggaca
i nomLeu3.chr1a            I 243 C 0
e saiBol1.JH378348            128038 2368 -    375362 I
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       77808 2612 -    285216 I
e cebCap1.NW_016108108v1      131283 3068 -    373274 I
e calJac3.chr4             171309213 2031 - 171630274 I
e colAng1.NW_012115566v1     1713127 14025 -   3067355 I
e manLeu1.NW_012104165v1     1823646 1716 +   2316924 I
e chlSab2.chr17             28179946 15 -  71996105 I
e cerAty1.NW_012001495v1     1730679 10 -   2157725 I
e macNem1.NW_012011356v1     1834653 1243 -   2996164 M
e macFas5.chr4              28863401  5 - 170955103 I
e rheMac8.chr4              29173365 14 + 172585720 I

a score=102953.000000
s hg38.chr6_GL000254v2_alt     16599 85 +   4827813 aagagaaagacttagt---agatatcaaaaaataaattaacctgaataaaaatgaaagcacaatataccaaaattttcaagacaacct
s panTro5.chr6              28993630 85 + 175400573 aagagaaagacttagt---agatatcaaaaaataaattaacctgaataaaaatgaaagcacaatataccaaaattttcaagacaacct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29237331 85 + 173848474 aagagaaagacttagt---agatatcaaaaaataaattaacctgaataaaaatgaaagcacaatataccaaaattttcaagacaacct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5028147 85 +   6154872 aagagaaagccttagt---agatatcaaaaaataaattaacctgaataaaaatgaaagcacaatataccaaaattttcaagacaacct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74030455 85 + 122973662 aagagaaagccttggt---agatatcaaaaaataaattaacctgaataaaaatgaaagcacaatatatcaaaattttcaagacaacct
i nomLeu3.chr1a            C 0 I 1
s calJac3.chr4             171311244 88 - 171630274 aagagagaaactccgtctcaaaaattaattaattaattaacctgaataaaaatgaaaacagaatatatcaaaattttcaagacaacct
i calJac3.chr4             I 2031 C 0
e saiBol1.JH378348            128038 2368 -    375362 I
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       77808 2612 -    285216 I
e cebCap1.NW_016108108v1      131283 3068 -    373274 I
e colAng1.NW_012115566v1     1713127 14025 -   3067355 I
e manLeu1.NW_012104165v1     1823646 1716 +   2316924 I
e chlSab2.chr17             28179946 15 -  71996105 I
e cerAty1.NW_012001495v1     1730679 10 -   2157725 I
e macNem1.NW_012011356v1     1834653 1243 -   2996164 M
e macFas5.chr4              28863401  5 - 170955103 I
e rheMac8.chr4              29173365 14 + 172585720 I

a score=-1132.000000
s hg38.chr6_GL000254v2_alt     16684 1 +   4827813 -a
s panTro5.chr6              28993715 1 + 175400573 -a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29237416 1 + 173848474 -a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5028232 1 +   6154872 -a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74030541 1 + 122973662 -a
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4              29173379 1 + 172585720 -A
i rheMac8.chr4             I 14 C 0
s macFas5.chr4              28863406 1 - 170955103 -A
i macFas5.chr4             I 5 C 0
s chlSab2.chr17             28179961 1 -  71996105 -A
i chlSab2.chr17            I 15 C 0
s calJac3.chr4             171311332 1 - 171630274 c-
i calJac3.chr4             C 0 C 0
e saiBol1.JH378348            128038 2368 -    375362 I
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       77808 2612 -    285216 I
e cebCap1.NW_016108108v1      131283 3068 -    373274 I
e colAng1.NW_012115566v1     1713127 14025 -   3067355 I
e manLeu1.NW_012104165v1     1823646 1716 +   2316924 I
e cerAty1.NW_012001495v1     1730679 10 -   2157725 I
e macNem1.NW_012011356v1     1834653 1243 -   2996164 M

a score=1303230.000000
s hg38.chr6_GL000254v2_alt     16685 298 +   4827813 aaaaaacactgagagagaaatgtataccactaactgcatacattag---aaaaagaaaaaagtctcaagtcagtcatctaaacttttatttgaagaacccaggtggggaaaaaagcaaaataaacccaaagcaaatagacaaaagataacaataaaaataagaacaaaattcagtgaaacggaacacaaacaaaaaaagaaaaacaaac----------------------aaaaag------ctagttccttt---agatcaataaaagaagacctctagtaagac--agaaattttaggaagagagatgacacaaattaccaatatcaggaa
s panTro5.chr6              28993716 300 + 175400573 aaaaaacactgagagagaaatgtataccactaactgcatacattag---aaaaagaaaaaagtctcaagtcagtcatctaaacttttatttgaagaacacaggtggggaaaaaagcaaaataaacccaaagcaaatagacaaaagataacaataaaaataagaacaaaattcaatgaaacggaacacaaacaaaaaaagaaaaacaaac----------------------aaaaag------ctagttccttt---agatcaacaaaagaagacctctagtaagactgagaaattttaggaagagagatgacacaaattaccaatatcaggaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29237417 300 + 173848474 aaaaaacactgagagagaaatgtataccactaactgcatacattag---aaaaagataaaagtctcaagtcagtcatctaaacttttatttgaagaacccaggtggggaaaaaagcaaaataaacccaaagcaaatagacaaaagataacaataaaaataagaacaaaattcaatgaaacggaacacaaacaaaaaaagaaaaacaaac----------------------aaaaag------ctagttccttt---agatcaacaaaagaagacctctagtaagactgagaaattttaggaagagagatgacacaaattaccaatatcaggaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5028233 299 +   6154872 aaaaaacactgagagagaaatgtataccactaactgcatacattag---aaaaagaaaaaagtctcaagtcagtcatctaaacttttatttgaagaacccaggtggggaaaaaagcaaaataaacccaaagcaaatagacaaaagataacaataaaaataagaacaaaattcaatgaaacggaacacaaacaaaaaaagaaaaacaaac----------------------aaaaag------ctagttccttt---agatcaataaaagaagacctctagtaagactgagaaattttaggaagagagatgaca-aaattaccaatatcaggaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74030542 275 + 122973662 aaaaaacactgagagagaaatatatactactaactgcatacattag---aaaaa-aaaaaagtctcaagtcagtcatctaaacttttatttgaagaacccaggtggggaaaaaagcaaaataaacccaaagc-----------------------aaataagagcaaaattcaatgaaactgaacacaaacaaaaaaagaaaaacaaac----------------------aaaaag------ctagttcctttagaagatcaataaaagaaaacctctagtaagactgagaaatttt----agagagatgacacaaattaccaatatcaggaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29173380 306 + 172585720 AAAAACCActgagatagaaatgtataccactaactgcatacattag------aaaaaaaaagtctcaagtcagtcatctaagcttttacttgaagaacccaggtggagaaaaaagcaaaataaacccaaagcaaatagacaaaagataacaataaaaacaagagcaaaattcaatgaaactgtacacaaacaaaaaaagaaaaacaaac----------------------aaaaagccagttccagttcctttagaagatcaataaaagaagacctctagtaagactgagaaattttaggaagatagatgacacaaattaccaatatcaggaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28863407 306 - 170955103 AAAAACCActgagatagaaatgtataccactaactgcatacattag------aaaaaaaaagtctcaagtcagtcatctaagcttttacttgaagaacccaggtggagaaaaaagcaaaataaacccaaagcaaatagacaaaagataacaataaaaacaagagcaaaattcaatgaaactgtacacaaacaaaaaaagaaaaacaaac----------------------aaaaagccagttccagttcctttagaagatcaataaaagaagacctctagtaagactgagaaattttaggaagatagatgacacaaattaccaatatcaggaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1730689 301 -   2157725 AAAAACCActgagagagaaatgtataccactaacggcatacattag-----aaaaaaaaaagtctcaagtcagtcatctaagcttttacttgaagaacctaggtggagaaaaaggcaaaataaacccaaagcaaatagacaaaagataacaataaaaacaagagcaaaattcaatgaaactgaacacaaacaaaaaaagaaaaacaaac----------------------aaaaag------ccagttcctttagaagatcaataaaagaagacctctagtaagactgagaaattttaggaagatagataacacaaattaccaatatcaggaa
i cerAty1.NW_012001495v1   I 10 C 0
s chlSab2.chr17             28179962 306 -  71996105 AAAAACCActcagagagcaatgtataccactaactgcatacattaggaaaaaaaaaaaaaagtctcaagtcagtcatctaagcttttacttgaagaacccaggtggagaaaagggcaaaataaacccaaagcaaatagacaaaagataacaataaaaacaagagcaaaattcaatgaaactgaacacaaacaaaaaaagaaaaacaaac----------------------aaaaag------ccagttcctttagaagatcaataaaagaagacctctagtaagactgagaaattttaggaagacagataacacaaattaccaatatcaggaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1825362 301 +   2316924 AAAAACCActgagagagaaatgtataccactaacggcatacattag-----aaaaaaaaaagtctcaagtcagtcatctaagcttttacttgaagaacctaggtggagaaaaaggcaaaataaacccaaagcaaatagacaaaagataacaataaaaacaagagcaaaattcaatgaaactgaacacaaacaaaaaaagaaaaacaaac----------------------aaaaag------ccagttcctttagaagatcaataaaagaagacctttagtaagactgagaaattttaggaagatagataacacaaattaccaatatcaggaa
i manLeu1.NW_012104165v1   I 1716 C 0
s calJac3.chr4             171311333 324 - 171630274 caaaaacactgagagagaaatgcatagcactgacagcatacattag----gggggaaaaaagcctcgagtcagtcatctaagctcttacttgaagaacccaggtggtgacaaaagcaaaatcaacccaaagccaatagaaaaaagataacaataaaaataagagcaaaaatcaatgaaactgagcattaaaaaaaaaaaaaaaaaaaaccagaaaaacaaacaacaattcaaaaaaa------ctagttcctttagaagatcaataaaagaagactgctagtaagactgggaaatcttaggaagagagatgacacaaattaccaatatcaggaa
i calJac3.chr4             C 0 C 0
e saiBol1.JH378348            128038 2368 -    375362 I
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       77808 2612 -    285216 I
e cebCap1.NW_016108108v1      131283 3068 -    373274 I
e colAng1.NW_012115566v1     1713127 14025 -   3067355 I
e macNem1.NW_012011356v1     1834653 1243 -   2996164 M

a score=1479752.000000
s hg38.chr6_GL000254v2_alt     16983 273 +   4827813 taaaaagaggatatcactgtagactctgctgacatcaaaaggataTGTTTTTGGATGATTTCCTTtaaaaaatttagccgggctcggtggctca-cacctgtaatcccagcattt----------------------------------------------------------------------------------AAA----AAATaactagccatgcatggtggcgggtgcctgtaatcccagctactcgggagac--aggtaggagaatcgcttgaa-ccgggaggtggagggtgcaatgggccgagatagcaccatttcactccagcctgggc-------aacaagagcgaaactccgtcgcaGA
s panTro5.chr6              28994016 275 + 175400573 taaaaagaggatatcactgtagactctgctgacatcaaaaggataTGTTTTTGGATGATTTCCTTtaaaaaatttagccgggctcggtggctca-cacctgtaatcccagcattt----------------------------------------------------------------------------------AAA----AAATaactagccatgcatggtggcgggtgcctgtaatcccagctactcgggagactgaggtaggagaatcgcttgaa-ccgggaggtggagggtgcaatgggccgagatagcaccatttcactccagcctgggc-------aacaagagcgaaactccgtcgcaGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29237717 275 + 173848474 taaaaagaggatatcactgtagactctgctgacatcaaaaggataTGTTTTTGGATGATTTCCTTtaaaaaatttagccgggctcggtggctca-cacctgtaatcccagcattt----------------------------------------------------------------------------------AAA----AAATaactagccatgcatggtggcgggtgcctgtaatcccagctactcgggagactgaggtaggagaatcgcttgaa-ccgggaggtggagggtgcaatgggccgagatagcaccatttcactccagcctgggc-------aacaagagcgaaactccgtcgcaGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5028532 275 +   6154872 taaaaagaggatatcactgtagactctgctgacatcaaaaggataTATTTTTGGATGATTTCCTTtaaaaaatttagccgggctcggtgactca-cacctgtaatcccagcattt----------------------------------------------------------------------------------AAA----AAATaactagccatgcatggtggcgggtgcctgtaatcccagctactcgggagactgaggtaggagaatcgcttgaa-ccgggaggtggagggtgcaatgggcctagatagcaccatttcactccagcctgggc-------aacaagagcgaaactccgtcgcaGA
i gorGor5.CYUI01015250v1   C 0 I 1
s nomLeu3.chr1a             74030817 276 + 122973662 taaaaagagtatatcactgtagactctgctgacatcaaaaggataTGTTTTTGGATGATTTCCTTCAAAAAACTTAGCCGCGCGCGGTGGCTCACCCCCCGTAATCCCAGCATTT----------------------------------------------------------------------------------AAA----AAACaattagccgggcgtggtggcgagtgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaa-ccgggaggtggagggtgcaatgggccgagatagcaccatttcactccagcctgggc-------aacaagagcgaaactccgtcgcaGA
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4              29173686 275 + 172585720 taaaaagaggatatcactatagactccgctgacatcaaaaggatGTGTTTTTGGATGATTTCCTTtaaaaaacttagcctggtgcggtggctca-cacctgtaatcccagcattt----------------------------------------------------------------------------------AAA----AAACaattagccgggcgtgggggcgggtgcctgtaatcccagctactcgggaggcagaggcaggagaatcgcttgaa-ctggcaggtggaggttgcaatgggccgagatagcgccatttcactccagcctgggc-------aacaagagtgaaactccgtcgcaGA
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              28863713 275 - 170955103 taaaaagaggatatcactatagactccgctgacatcaaaaggatGTGTTTTTGGATGATTTCCTTtaaaaaacttagcctggtgcggtggctca-cacctgtaatcccagcattt----------------------------------------------------------------------------------AAA----AAACaattagccgggcgtgggggcgggtgcctgtaatcccagctacttgggaggcagaggcaggagaatcgcttgaa-ctggcaggtggaggttgcaatgggccgagatagcgccatttcactccagcctgggc-------aacaagagtgaaactccgtcgcaGA
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     1835896 275 -   2996164 TaaaaagaggatatcactatagactccgctgacatcaaaaggatGTGTTTTTGGATGATTTCCTTtaaaaaacttagcctggtgcggtggctca-cacctgtaatcccagcattt----------------------------------------------------------------------------------AAA----AAACaattagccgggcgtgggggcgggtgcctgtaatcccagctactcgggaggcagaggcaggagaatcgcttgaa-ctggcaggtggaggttgcaatgggccgagatagcgccatttcactccagcctgggc-------aacaagagtgaaactccgtcgcaGA
i macNem1.NW_012011356v1   M 1243 I 1
s cerAty1.NW_012001495v1     1730990 275 -   2157725 taaaaagaggatatcactacagactctgctgacatcaaaaggataTGTTTTTGGATGATTTCCTTtaaaaaacttagcctggtgcggtggctca-cacctgtaatcccagcattt----------------------------------------------------------------------------------AAA----AAACaattagctgggcgtggtggcgggtgcctgtaatcccaactactcgggaggctgaggcaggagaatcgcttgaa-ctgggaggtggaggttgcaatgggccgagacagcgccatttcactccagcctgggc-------aacaagagcgaaactccgtcgcaGA
i cerAty1.NW_012001495v1   C 0 I 1
s chlSab2.chr17             28180268 275 -  71996105 taaaaagaggatatcaccacagactctgctgacatcaaaaggataTGTTTTTGGATGATTTCCTTTAAGaaacttagcctggtgcggtggttca-cacctgtaatcccagcattt----------------------------------------------------------------------------------AAA----AAACaattagccgggcatggtggcgggtgcctgtaatcccggctactcgggaggctgaggcaggagaatcgcttgaa-ctgggaggtggaggttacaatgtgccgagatagcgccatttcacgccagcctgggc-------aacaagagcgaaactccgtcgcaGA
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012104165v1     1825663 275 +   2316924 taaaaagaggatatcactacagactctgctgacatcaaaaggataTGTTTTTGGATGATTTCCTTtaaaaaacttagcctggtgcggtggctca-cacctgtaatcccagcattt----------------------------------------------------------------------------------AAA----AAACaattagctgggcgtggtggcgggtgcctgtaatcccaactactcgggaggctgaggcaggagaatcgcttgaa-ctgggaggtggaggttgcaatgggccgagacagcgccatttcactccagcctgggc-------aacaagagcgaaactccgtcgcaGA
i manLeu1.NW_012104165v1   C 0 I 1
s calJac3.chr4             171311657 369 - 171630274 taaaaagaggatatcactgtagactctgccgatatcaaaaggataTGTTTTTGGATAATTTCCTCCAAAAAATTTATcccggcgcgatggctca-cacctgtattcccagcactttcacagcctgaggagggtggatcgcctgaggtcgggagttcgagaccagcctggccatcatagtaaaatcacatctctactaaaattacaaaaaattagccgggcgtggtggcgggtgccctcaatcccagctacctgggagactgaggcaggagaatcgcttaaacctgggaggcggaggttgcagtgagcggagatcacggtatttcattccagcctgggcaacaagaaacaagagtgaaattctgtctcaaa
i calJac3.chr4             C 0 I 21
e saiBol1.JH378348            128038 2368 -    375362 I
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       77808 2612 -    285216 I
e cebCap1.NW_016108108v1      131283 3068 -    373274 I
e colAng1.NW_012115566v1     1713127 14025 -   3067355 I

a score=53480.000000
s hg38.chr6_GL000254v2_alt     17256 8 +   4827813 CTTTTTCT
s panTro5.chr6              28994291 8 + 175400573 CTTTTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29237992 8 + 173848474 CTTTTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5028808 8 +   6154872 CTTTTTCT
i gorGor5.CYUI01015250v1   I 1 C 0
s nomLeu3.chr1a             74031094 8 + 122973662 CTTTTTCT
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4              29173962 8 + 172585720 CTTTTTCT
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              28863989 8 - 170955103 CTTTTTCT
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     1836172 8 -   2996164 CTTTTTCT
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012001495v1     1731266 8 -   2157725 CTTTTTCT
i cerAty1.NW_012001495v1   I 1 C 0
s chlSab2.chr17             28180544 8 -  71996105 CTTTTTCT
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012104165v1     1825939 8 +   2316924 CTTTTTCT
i manLeu1.NW_012104165v1   I 1 C 0
s calJac3.chr4             171312047 8 - 171630274 CTTTTACT
i calJac3.chr4             I 21 C 0
s saiBol1.JH378348            130406 8 -    375362 CTTTTACT
i saiBol1.JH378348         I 2368 C 0
e otoGar3.GL873742           1469661 16003 -   2232465 I
e aotNan1.NW_018494050v1       77808 2612 -    285216 I
e cebCap1.NW_016108108v1      131283 3068 -    373274 I
e colAng1.NW_012115566v1     1713127 14025 -   3067355 I

a score=177645.000000
s hg38.chr6_GL000254v2_alt     17264 30 +   4827813 CCCCCTTGTAAGGTCGGAGCGTTCCCACTC
s panTro5.chr6              28994299 30 + 175400573 CCCCCTTGTAAGGTCGGAGCGTTCCCACTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29238000 30 + 173848474 CCCCCTTGTAAGGTCGGAGCGTTCCCACTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5028816 30 +   6154872 CCCCCTTGTAAGGTCGGAGCGTTCCCAGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74031102 30 + 122973662 CCCCCTTGTAAGGTCGGAGCATTCCCAGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29173970 30 + 172585720 CCCCCTTGTAAGGTTGGAGCATTCCCAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28863997 30 - 170955103 CCCCCTTGTAAGGTTGGAGCATTCCCAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1836180 30 -   2996164 CCCCCTTGTAAGGTTGGAGCATTCCCAGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1731274 30 -   2157725 CCCCATTGTAAGGTTGGAGCATTCCCAGTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28180552 30 -  71996105 CCCCCTTGTAAGGTTGGAGCATTCCCAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1825947 30 +   2316924 CCCCATTGTAAGGTTGGAGCATTCCCAGTC
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171312055 29 - 171630274 CCTCTGTGTGAGGTCGGAGCCTTCCCAGT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            130414 29 -    375362 CTTCTGTGCGAGGTCGGAGCCTTCCCAGT-
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1485664 30 -   2232465 CCCAGTTGCAATATCTGCACTTTCAGAGAC
i otoGar3.GL873742         I 16003 C 0
e aotNan1.NW_018494050v1       77808 2612 -    285216 I
e cebCap1.NW_016108108v1      131283 3068 -    373274 I
e colAng1.NW_012115566v1     1713127 14025 -   3067355 I

a score=121814.000000
s hg38.chr6_GL000254v2_alt     17294 15 +   4827813 AGGAAACAACATTTC
s panTro5.chr6              28994329 15 + 175400573 AGGAAAAAACATTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29238030 15 + 173848474 AGGAAAAAACATTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5028846 15 +   6154872 AGGAAACAACATTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74031132 14 + 122973662 AGGAAAGAA-ATTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29174000 15 + 172585720 AGGAAACAACATTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28864027 15 - 170955103 AGGAAACAACATTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1836210 15 -   2996164 AGGAAACAACATTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1731304 15 -   2157725 AGGAAACAACATTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28180582 15 -  71996105 AGGAAACAACATTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1825977 15 +   2316924 AGGAAACAACATTTC
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171312084 15 - 171630274 AGGAAACAACATTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            130443 15 -    375362 AGGAAACAACATTCC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      134351 15 -    373274 AGGAAACAACATTCC
i cebCap1.NW_016108108v1   I 3068 C 0
s otoGar3.GL873742           1485694 15 -   2232465 AGGAAACAATAATCC
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       77808 2612 -    285216 I
e colAng1.NW_012115566v1     1713127 14025 -   3067355 I

a score=215553.000000
s hg38.chr6_GL000254v2_alt     17309 27 +   4827813 TCTACTCTAGGTTTATC--TGGCCTCGCA
s panTro5.chr6              28994344 27 + 175400573 TCTACTCTAGGTTTATC--CGGCCTCGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29238045 27 + 173848474 TCTACTCTAGGTTTATC--CGGCCTCGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5028861 27 +   6154872 TCTACTCTAGGTTTATC--CGGCCTCGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74031146 27 + 122973662 TCTACTCTAGGTTTATC--CGGCCTCGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29174015 27 + 172585720 TCCACTCTAGGTTTATC--CGGCCTCGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28864042 27 - 170955103 TCCACTCTAGGTTTATC--CGGCCTCGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1836225 27 -   2996164 TCCACTCTAGGTTTATC--CGGCCTCGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1731319 27 -   2157725 TCCACTCTAGGTTTATC--CGGCCTCGCG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28180597 27 -  71996105 TCCACTCTAGGTTTCTC--CGGCCTCACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1825992 27 +   2316924 TCCACTCTAGGTTTATC--CGGCCTCGCG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1727152 28 -   3067355 TCTACTCTAGGTTTATC-TCCGTCACGCA
i colAng1.NW_012115566v1   I 14025 C 0
s calJac3.chr4             171312099 27 - 171630274 TCGACTCTCGGTTTATC--TCGCCTTGCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            130458 27 -    375362 TAGATTCTGGGTTTATC--CTGCCTTGCG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      134366 26 -    373274 TCAACTCTGGGTTTATC--CCGCCTT-CG
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1485709 29 -   2232465 TCTATTCTAGGTTTTCCGCTAGCCGCGCA
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       77808 2612 -    285216 I

a score=596949.000000
s hg38.chr6_GL000254v2_alt     17336 53 +   4827813 TCTC-TCCCCAGCTGGGCCCAGCCTCAGCCTATGCTGCAGAAATGTTTAAAGTC
s panTro5.chr6              28994371 53 + 175400573 TCTC-TCCCCAACTGGGCCCAGCCTCAGCCTATGCTGCAGAAATGTTTAAAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29238072 53 + 173848474 TCTC-TCCCCAACTGGGCCCAGCCTCAGCCTATGCTGCAGAAATGTTTAAAGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5028888 53 +   6154872 TCTC-TCCCCAACTGGGCCCAGCCTCAGCCTATGCTGCAGAAATGTTTAAAGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74031173 53 + 122973662 TCTC-TCCCCAACTGGGCCCAGCCTCAGCCTGTGCTGCAGAAATGTTTCAAGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29174042 53 + 172585720 TCTC-TCCCCAGCTGGGCCCAGCCTCAGCCTATGCTGCAGAAATGTTTAAAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28864069 53 - 170955103 TCTC-TCCCCAGCTGGGCCCAGCCTCAGCCTATGCTGCAGAAATGTTTAAAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1836252 53 -   2996164 TCTC-TCCCCAGCTGGGCCCAGCCTCAGCCTATGCTGCAGAAATGTTTAAAGTC
i macNem1.NW_012011356v1   C 0 I 16003
s cerAty1.NW_012001495v1     1731346 53 -   2157725 TCTC-TCCCCAACTGGGCCCAGCCTCAGCCTATGCTGCAGAAATGGTTAAAGTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28180624 53 -  71996105 TCTC-TCCCCAACTGGGCCCAGCCTCAGCCTATGCTGCAGAAATGGTTAAAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1826019 53 +   2316924 TCTC-TCCCCAACTGGGCCCAGCCTCAGCCTATGCTGCAGAAATGGTTAAAGTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1727180 53 -   3067355 TCTC-TCGCCAGCTGGGCGCAGCCTCAGCCTATGCTGCAAAAATGTTTAAAGCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171312126 53 - 171630274 TTTC-TCCCCAGCTGGACTCAGCCTCAGCCTGTGCTGCAGAAATGTTTAAAGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            130485 53 -    375362 CCTC-TCCCCAACTAGACTCAGCCTCAGCCTATGCTGCAGAAATGTTTAAAGTC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      134392 53 -    373274 CCTC-TCCCCAACTGGACCCAGCCTCAGCCTATGCTGCAGAAATGTTTAAAGTC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       80420 53 -    285216 TCTC-TCCCCAACTGGACTCAGCCTCAGCCTACGCTGCAGAAATGTTTAAAGTC
i aotNan1.NW_018494050v1   I 2612 C 0
s otoGar3.GL873742           1485738 52 -   2232465 TCTCTTCCTCAACTGGACCCAGCCTCAGCTTATGCTGCGACAATGCT--GAGTT
i otoGar3.GL873742         C 0 C 0

a score=1285540.000000
s hg38.chr6_GL000254v2_alt     17389 130 +   4827813 AAGCATGTAGAGAAGG----------AAAAAAAAAAAGGAAAGTGATGTGGAAATTAAAATAGCAGCTGCATAGGAATCTCAACATAGTGCTTAAAATGTGCATAAACGAGACTAGGAGTGCC--CTGCGCTTTTGTGAAAA
s panTro5.chr6              28994424 134 + 175400573 AAGCATGTAGAGAAGG------AAAAAAAAAAAAAAAGGAAAGTGATGTGGAAATTAAAATAGCAGCTGCATAGCAATCTCAACATAGTGCTTAAAATGTGCATAAACGAGACTAGGAGTGCC--CTGCGCTTTTGTGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29238125 132 + 173848474 AAGCATGTAGAGAAGG--------AAAAAAAAAAAAAGGAAAGTGATGTGGAAATTAAAATAGCAGCTGCATAGCAATCTCAACATAGTGCTTAAAATGTGCATAAACGAGACTAGGAGTGCC--CTGCGCTTTTGTGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5028941 140 +   6154872 AAGCATGCAGAGAAGGACaaaaaaaaaaaaaaaaaaaGGAAAGTGATGTGGAAATTAAAATAGCAGCTGCATAGGAATCTCAACATAGTGCTTAAAATGTGCATAAACGAGACTAGGAGTGCC--CTGCGCTTTTATGAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74031226 130 + 122973662 GAGCATGTAGAGAAGG----------AAAAAAAAAATGGAAAGTGATGTGGAAATTAAAATAGCAGCTACATATAAATCTCAACATAGTGCTTAAAATGTGCATAAACGAAACTAGGAGTGCC--CTACACTTTTGTGAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29174095 134 + 172585720 GAACACGTAGAGAAGG----AAAAAAAAAAAAAAAG--GAAAGTGATGTGGAAATTAAAATAGCAGCTACATATGAATCTCAACATAGTGCTTAAAATGTGCATAAACGAGACTAGAAGTGCC--CTGCACTTTTGTGAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28864122 136 - 170955103 GAACACGTAGAGAAGG----aaaaaaaaaaaaaaaaaGGAAAGTGATGTGGAAATTAAAATAGCAGCTACATATGAATGTCAACATAGTGCTTAAAATGTGCATAAACGAGACTAGAAGTGCC--CTGCACTTTTGTGAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1852308 134 -   2996164 GAGCATATAGAGAAGG----AAAAAAAGAAAAAAAA--GAAAGTGATGTGGAAATTAAAATAGCAGCTACATATGAATCACAACGCAGTGTTTAAAATGTGCGTAAACGGGTCTAGGAGTGCG--CTGCACTATTGTGAAAA
i macNem1.NW_012011356v1   I 16003 I 414
s cerAty1.NW_012001495v1     1731399 136 -   2157725 GAACATGTAGAGAAGG----aaaaaaaaaaaaaaaaaGGAAAGTGATGTGGAAATTAAAATAGCAGCTACATATGAATCTCAACATAGTGCTTAAAATGTGCATAAACGAGACTAGGAGTGCC--CTGCACTTTTGTGAAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28180677 142 -  71996105 GAACATGTagagaaggaaaaaaaaaaaaaaaaaaaaaggaaagTGATGTGGAAATTAAAATAGCAGCTACATATGAATCTCAACATAGTGCTTAAAATGTGCATAAACGAGACTAGGAGTGCCCTCTGCACTTTTGTGAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1826072 138 +   2316924 GAACATGTAGAGAAGG--aaaaaaaaaaaaaaaaaaaGGAAAGTGATGTGGAAATTAAAATAGCAGCTACATATGAATCTCAACATAGTGCTTAAAATGTGCATAAACGAGACTAGGAGTGCC--CTGCACTTTTGTGAAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1727233 132 -   3067355 GAGCATATAGAGAAGG----AAAAAGAGAAAAAAAA--TAAAGTGATATGGAAATTAAAATAGCAGCTACATATGAATCACAAC--AGTGTTTAAAATGTGTGTAAACGGGTCTAGGAGTGCG--CTGCACTATTGTGAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171312179 134 - 171630274 GAGCATGCAAAGAAGG----GGAAAAAGGAAAAACA--GAACGCTATGTGGAAATTAAAATAGCAGCTACATGTGAATCTTAACACAGTGCTTAAAATGTGCATAAACGAGACTGGGAGTGCC--CTGCACTTTTGTGAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            130538 134 -    375362 GAGCATGCAAAGAAGG----GGAAAAAGAAAAAACA--GAACACGATGTGGAAATTAAAATAGCAGCTACATATGCATCTTAACACAGTGCTTAAAACGTGCATAAACGAGACTGGGAGTGCC--CTGCACTTTTGTGAACA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      134445 134 -    373274 GAGCATGCAAAGAAGG----GGAAAAAGAAAAAACA--GAACATGATGTGGAAATTAAAATAGCAGCTACATATGAATCTTAACACAATGCTTAAAATGTGCATAAACGAGACTGGGAGTGCC--CTGCACTTTTGTGAAAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       80473 134 -    285216 AAGCATGCAAAGAAGG----GGAAAAAGAAAAAACA--GAACGTGAAGTGGAAATTAAAATAGCAGCTACATGTGAATCTTAACACAGTGCTTAAAATGTGCATAAACGAGACTGGGACTGCC--CTGCGCTTTTGTGAAAA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1485790 130 -   2232465 GAGTACACAGGAGAGG--------GAAAAAAAATTA--GAAACCGATGCGGAAATTAAAATAGTCAATACAAATGAATCTCAAAATAGTGCTTAAAGTATGCGTAAACGGGACTAGTAGTGCG--CGGAACTACCGCTGAAA
i otoGar3.GL873742         C 0 C 0

a score=52830.000000
s hg38.chr6_GL000254v2_alt     17519 7 +   4827813 CTTCATT
s panTro5.chr6              28994558 7 + 175400573 CTTCATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29238257 7 + 173848474 CTTCATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5029081 7 +   6154872 CTTCATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74031356 7 + 122973662 GTTCATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29174229 7 + 172585720 GTTCATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28864258 7 - 170955103 GTTCATT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1731535 7 -   2157725 GTTCATT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28180819 7 -  71996105 GTTCATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1826210 7 +   2316924 GTTCATT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1727365 7 -   3067355 GTTCATT
i colAng1.NW_012115566v1   C 0 I 575
s calJac3.chr4             171312313 3 - 171630274 G----TT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            130672 7 -    375362 GTTCATT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      134579 7 -    373274 GTTCATT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       80607 7 -    285216 GTTCATT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1485920 7 -   2232465 CTTCATT
i otoGar3.GL873742         C 0 C 0
e macNem1.NW_012011356v1     1852442 414 -   2996164 I

a score=470018.000000
s hg38.chr6_GL000254v2_alt     17526 63 +   4827813 TAGAAATAAATGAGAAAGAAGGTGGAGAGGAGCCGAGAACCAGCAGGTGGGGAAAGGGAAGAG
s panTro5.chr6              28994565 63 + 175400573 TAGAAATAAATGAGAAAGAAGGTGGAGAGGAGCCGAGAACCAGCTGGTGGGGAAAGGGAAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29238264 63 + 173848474 TAGAAATAAATGAGAAAGAAGGTGGAGAGGAGCCGAGAACCAGCTGGTGGGGAAAGGGAAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5029088 63 +   6154872 TAGAAATAAACGAGAAAGAAGGTGGAGAGGAGCCGAGAACCAGCTGGTGGGGAAAGGGAAGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74031363 63 + 122973662 TAGAAATAAACGAGAGAGAAGGTGGAGAGGAGCCGAGCACCAGCTGGTGGGGAAAGGGAACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29174236 63 + 172585720 TAGAAATAAACAGGAGAGAAGGTGGAGAGGAGCCGAGCAACAGCTGGTGGGGAAAGGGAAGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28864265 63 - 170955103 TAGAAATAAACAGGAGAGAAGGTGGAGAGGAGCCGAGCAACAGCTGGTGGGGAAAGGGAAGAG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1731542 62 -   2157725 TAG-AATAAACGGGAGAGAAGGTGGAGAGGAGCCGAGCAACAGCTGGTGGGGAAAGGGAAGAG
i cerAty1.NW_012001495v1   C 0 I 416
s chlSab2.chr17             28180826 63 -  71996105 TAGAAATAAACGGGAGAGAAGGTGGAGAGGAGCCGAGCACCAGCTGGTGGGGAAAGGGAAGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1826217 62 +   2316924 TAG-AATAAACGGGAGAGAAGGTGGAGAGGAGCCGAGCAACAGCTGGTGGGGAAAGGGAAGAG
i manLeu1.NW_012104165v1   C 0 I 11850
s calJac3.chr4             171312316 63 - 171630274 CAGAAGTAAACAGGAGAGATGTTTGAGAGGAGTCAAGCACCAGCTGGCAGGGAAAGGGAAGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            130679 63 -    375362 CAGAAGTAAACAGGAGAGACGGTGGAGAGGTGCCGAGCACCAGCTGGCAGGGAAAGGGAAGAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      134586 63 -    373274 CAGAAGTAAACAGGAGAGACGGTGGAGAGGAGCCGAGCATCAGCTGGCAGGGAAAGGAAAGAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       80614 63 -    285216 CAGAAGTAAACAGGAGAGACGGTGGAGAGGAGCCAAACACCAGCTGGCAGGGAAAGGGAAGAG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1485927 55 -   2232465 CAGGAGTAAGACGCAGAGA------AGAGGAG--GGTCACCAGCTGGTGAGGAGAGACAAAAG
i otoGar3.GL873742         C 0 C 0
e colAng1.NW_012115566v1     1727372 575 -   3067355 I
e macNem1.NW_012011356v1     1852442 414 -   2996164 I

a score=120211.000000
s hg38.chr6_GL000254v2_alt     17589 25 +   4827813 GCAGGCTAGAGTTAAAAAATGAAGG
s panTro5.chr6              28994628 25 + 175400573 GCAGGCTAGGGTTAAAAAATGAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29238327 25 + 173848474 GCAGGCTAGGGTTAAAAAATGAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5029151 25 +   6154872 GCAGGCTAGGGTTAAAAAATGAAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74031426 25 + 122973662 GCAGGCTAGGGTTAAAAAATGAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29174299 22 + 172585720 ACAGGCTAGGGTTAAAAAATGT---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28864328 25 - 170955103 ACAGGCTAGGGTTAAAAAATGTAGG
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28180889 22 -  71996105 ACAGGCTAGGGTTAAAAAATGG---
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             171312379 25 - 171630274 GCAGGCTAGGGCGAAAAAATGGAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            130742 25 -    375362 GTAGGCTAGGGTGAAAAAATGGAGG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      134649 25 -    373274 GCACGCTAGGGTGAAAAAAAGGAGG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       80677 25 -    285216 GCAGGCTAGGGTGAAGAAATGGAGG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1485982 25 -   2232465 GCGGCATGGGGTGAAGAAGAAAAAG
i otoGar3.GL873742         C 0 C 0
e colAng1.NW_012115566v1     1727372 575 -   3067355 I
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e cerAty1.NW_012001495v1     1731604 416 -   2157725 I
e macNem1.NW_012011356v1     1852442 414 -   2996164 I

a score=56602.000000
s hg38.chr6_GL000254v2_alt     17614 8 +   4827813 AGGAAAAG
s panTro5.chr6              28994653 8 + 175400573 AGGAAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29238352 8 + 173848474 AGGAAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5029176 8 +   6154872 AGGAAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74031451 8 + 122973662 AGGAAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29174321 8 + 172585720 AGGAAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28864353 5 - 170955103 ---AAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1852856 8 -   2996164 AGGAAAAG
i macNem1.NW_012011356v1   I 414 C 0
s chlSab2.chr17             28180911 8 -  71996105 AGGAAAAG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1727947 8 -   3067355 AGGAAAAG
i colAng1.NW_012115566v1   I 575 C 0
s calJac3.chr4             171312404 8 - 171630274 CAGAAAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            130767 8 -    375362 CAGAAAAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      134674 8 -    373274 TGGAAAAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       80702 8 -    285216 CAGAAAAG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486007 8 -   2232465 AAGAGGAG
i otoGar3.GL873742         C 0 T 7497
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e cerAty1.NW_012001495v1     1731604 416 -   2157725 I

a score=120235.000000
s hg38.chr6_GL000254v2_alt     17622 16 +   4827813 CATCCTCAAGATTATT
s panTro5.chr6              28994661 16 + 175400573 CATCCTCAAGATTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29238360 16 + 173848474 CATCCTCAAGATTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5029184 16 +   6154872 CATCCTCAAGATTATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74031459 16 + 122973662 CATCCTCAAGATTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29174329 16 + 172585720 CATCCTCAAGATTATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28864358 16 - 170955103 CATCCTCAAGATTATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1852864 16 -   2996164 CATCCTCAAGATTATT
i macNem1.NW_012011356v1   C 0 T 16544
s chlSab2.chr17             28180919 16 -  71996105 CATCCTCAACATTATA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1727955 16 -   3067355 CATCCTCAAGATTATT
i colAng1.NW_012115566v1   C 0 T 11874
s calJac3.chr4             171312412 16 - 171630274 CACCCTCAAGATTATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            130775 16 -    375362 CACCCTCAAGATTATT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      134682 16 -    373274 CACCCTCAAGATTATT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       80710 16 -    285216 CACCCTCAAGGATATT
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e cerAty1.NW_012001495v1     1731604 416 -   2157725 I

a score=64569.000000
s hg38.chr6_GL000254v2_alt     17638 14 +   4827813 CAG-----------Aatatatatat
s panTro5.chr6              28994677 14 + 175400573 CAG-----------AATATATATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29238376 14 + 173848474 CAG-----------AATATATATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5029200 14 +   6154872 CAG-----------Aatatatatat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74031475 14 + 122973662 CGG-----------Aatatatatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29174345 14 + 172585720 AGG-----------Aatatatatat
i rheMac8.chr4             C 0 I 3
s macFas5.chr4              28864374 14 - 170955103 AGG-----------Aatatatatat
i macFas5.chr4             C 0 I 3
s chlSab2.chr17             28180935 14 -  71996105 AGG-----------aatatatatat
i chlSab2.chr17            C 0 I 3
s calJac3.chr4             171312428 25 - 171630274 AGGAACATATatataatatatatat
i calJac3.chr4             C 0 I 13
s saiBol1.JH378348            130791 14 -    375362 AGG-----------aatatatatat
i saiBol1.JH378348         C 0 I 13
s cebCap1.NW_016108108v1      134698 14 -    373274 AGG-----------AATATATATAT
i cebCap1.NW_016108108v1   C 0 I 2544
s aotNan1.NW_018494050v1       80726 14 -    285216 AGG-----------AATatatacat
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T
e colAng1.NW_012115566v1     1727971 11874 -   3067355 T
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e cerAty1.NW_012001495v1     1731604 416 -   2157725 I
e macNem1.NW_012011356v1     1852880 16544 -   2996164 T

a score=-11849.000000
s hg38.chr6_GL000254v2_alt     17652 5 +   4827813 ---atat----a
s panTro5.chr6              28994691 5 + 175400573 ---ATAT----A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29238390 5 + 173848474 ---ATAT----A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5029214 5 +   6154872 ---atat----a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74031489 9 + 122973662 ---atatataaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29174362 5 + 172585720 ---atat----a
i rheMac8.chr4             I 3 I 33
s macFas5.chr4              28864391 5 - 170955103 ---atat----a
i macFas5.chr4             I 3 I 12
s chlSab2.chr17             28180952 5 -  71996105 ---atat----a
i chlSab2.chr17            I 3 I 12
s calJac3.chr4             171312466 4 - 171630274 a-aat-------
i calJac3.chr4             I 13 C 0
s saiBol1.JH378348            130818 5 -    375362 ataat-------
i saiBol1.JH378348         I 13 C 0
s aotNan1.NW_018494050v1       80740 5 -    285216 ataat-------
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T
e cebCap1.NW_016108108v1      134712 2544 -    373274 I
e colAng1.NW_012115566v1     1727971 11874 -   3067355 T
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e cerAty1.NW_012001495v1     1731604 416 -   2157725 I
e macNem1.NW_012011356v1     1852880 16544 -   2996164 T

a score=38530.000000
s hg38.chr6_GL000254v2_alt     17657 17 +   4827813 atat--------acatagtatatac
s panTro5.chr6              28994696 17 + 175400573 ATAT--------ACATAGTATATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29238395 17 + 173848474 ATAT--------ACATAGTATATAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5029219 17 +   6154872 atat--------acatagtatatac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74031498 17 + 122973662 atat--------atatagtatatcc
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28864408 17 - 170955103 atgt--------atatgatatatat
i macFas5.chr4             I 12 I 4
s chlSab2.chr17             28180969 17 -  71996105 atat--------atatgatatatat
i chlSab2.chr17            I 12 I 4
s calJac3.chr4             171312470 25 - 171630274 atatatgagggaatatattgtatcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            130823 25 -    375362 acatgtaaggatatatattgtatcc
i saiBol1.JH378348         C 0 I 3
s aotNan1.NW_018494050v1       80745 17 -    285216 atat--------atatattatatcc
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T
e cebCap1.NW_016108108v1      134712 2544 -    373274 I
e colAng1.NW_012115566v1     1727971 11874 -   3067355 T
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e cerAty1.NW_012001495v1     1731604 416 -   2157725 I
e macNem1.NW_012011356v1     1852880 16544 -   2996164 T
e rheMac8.chr4              29174367 33 + 172585720 I

a score=22508.000000
s hg38.chr6_GL000254v2_alt     17674 7 +   4827813 taataat
s panTro5.chr6              28994713 7 + 175400573 TAATAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29238412 7 + 173848474 TAATAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5029236 7 +   6154872 taataat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74031515 7 + 122973662 taataat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29174400 7 + 172585720 tgattat
i rheMac8.chr4             I 33 C 0
s macFas5.chr4              28864429 7 - 170955103 tgattat
i macFas5.chr4             I 4 C 0
s chlSab2.chr17             28180990 7 -  71996105 tgattac
i chlSab2.chr17            I 4 C 0
s calJac3.chr4             171312495 7 - 171630274 taagagt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            130851 7 -    375362 taataat
i saiBol1.JH378348         I 3 C 0
s aotNan1.NW_018494050v1       80762 7 -    285216 taataat
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T
e cebCap1.NW_016108108v1      134712 2544 -    373274 I
e colAng1.NW_012115566v1     1727971 11874 -   3067355 T
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e cerAty1.NW_012001495v1     1731604 416 -   2157725 I
e macNem1.NW_012011356v1     1852880 16544 -   2996164 T

a score=146901.000000
s hg38.chr6_GL000254v2_alt     17681 31 +   4827813 atataagg----atatattatatcctaataatata
s panTro5.chr6              28994720 31 + 175400573 ATATAAGG----ATATATTATATCCTAATAATATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29238419 31 + 173848474 ATATAAGG----ATATATTATATCCTAATAATATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5029243 31 +   6154872 atataagg----atatattatatcctaataatata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74031522 31 + 122973662 atataagg----atatattatatcctaataatata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29174407 29 + 172585720 atataagg----atatattatatcctaata--aca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28864436 31 - 170955103 atataagg----atatattatatcctaataataca
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1732020 31 -   2157725 atatacgg----atatattatatcctaataataca
i cerAty1.NW_012001495v1   I 416 C 0
s chlSab2.chr17             28180997 31 -  71996105 atatacgg----atatattatatcctaataataca
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             171312502 31 - 171630274 atataccg----atatagcatatcctaataatata
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            130858 31 -    375362 atatactg----ataaagcatatcctaataatata
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1       80769 35 -    285216 atatataaggatatatattgtatcctaataatata
i aotNan1.NW_018494050v1   C 0 I 896
e otoGar3.GL873742           1486015 7497 -   2232465 T
e cebCap1.NW_016108108v1      134712 2544 -    373274 I
e colAng1.NW_012115566v1     1727971 11874 -   3067355 T
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e macNem1.NW_012011356v1     1852880 16544 -   2996164 T

a score=414785.000000
s hg38.chr6_GL000254v2_alt     17712 134 +   4827813 agtaaataataatat-----ataacttgttaaataatcatataaataaatatattttataattatgttatttattatataatattaacataacatattatcaatataatattttatataacatatgtagtatgata---tat
s panTro5.chr6              28994751 130 + 175400573 AGTAAATAATAATAT-----ATAACTTGTTAAATAATAATATAAATAAATATATTTTATAATTATA----TTATTATATAATATTAACATAACATATTATCAACATAATATTTTATATATCATATGTAGTATGATA---TAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29238450 130 + 173848474 AGTAAATAATAATAT-----ATAACTTGTTAAATAATAATATAAATAAATATATTTTATAATTATA----TTATTATATAATATTAACATAACATATTATCAACATAATATTTTATATATCATATGTAGTATGATA---Tat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5029274 134 +   6154872 agtaaataataatat-----ataacttgttaaataataatataaataaatatattttataattatgttatttattatataatattaacatgacatattatcagtataatattttatatatcatatgtagtaagata---tat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74031553 124 + 122973662 agta---aataatat-----ataacttgttaaataataatataaataaatatattttataattatg-------ttatataatattaacataacatattattaatataatattttatatatcatatgtagtatgata---tat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29174436 134 + 172585720 agtaagtaataatatacaatataacttgctaaata---atataaataaatatattttataactatcttatttattgtataatattaac-----atattattaatataatattttatatatcatatgtagtatgatatattat
i rheMac8.chr4             C 0 I 2
s macFas5.chr4              28864467 134 - 170955103 agtaagtaataatatacaatataacttgctaaata---atataaataaatatattttataactatcttatttattgtataatattaac-----atattattaatataatattttatatatcatatgtagtatgatatattat
i macFas5.chr4             C 0 I 2
s cerAty1.NW_012001495v1     1732051 131 -   2157725 agtaaataataatatataacataacttgctaaata---atataaatatat---ttttataactgttt--tttattatataatattaacataaaatagtattaatataatattttatatgtcatatgtagtatgata---tat
i cerAty1.NW_012001495v1   C 0 I 2
s chlSab2.chr17             28181028 129 -  71996105 agtaaataataatatataacataacttgctaaata---atataaatata----ttttataactatgttatttattat---atattaacataacatattattaatataatattttatatgtcatatgtagtatgtca---tat
i chlSab2.chr17            C 0 I 10
s calJac3.chr4             171312533 120 - 171630274 ----atta-----atatgacataaattgttaaata---atataaataca----tgttataatcatatcatttattatataacattaatataatataTT---AATACAATATTTTATATATTATATGTAGTATGATA---CAT
i calJac3.chr4             C 0 I 696
s saiBol1.JH378348            130889 118 -    375362 ----attaataatatatgatataaattgttaaata---atataaatata----tttttaaatcatatcatttattatataacattaatatgttat----------TAATATTTTATATATCATATGTAGTATGATA---CAT
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       80804 896 -    285216 I
e cebCap1.NW_016108108v1      134712 2544 -    373274 I
e colAng1.NW_012115566v1     1727971 11874 -   3067355 T
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e macNem1.NW_012011356v1     1852880 16544 -   2996164 T

a score=23120.000000
s hg38.chr6_GL000254v2_alt     17846 8 +   4827813 cctaatat
s panTro5.chr6              28994881 8 + 175400573 CCTAATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29238580 8 + 173848474 cctaatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5029408 8 +   6154872 cctaatat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74031677 8 + 122973662 cctaatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29174572 8 + 172585720 cctaatat
i rheMac8.chr4             I 2 C 0
s macFas5.chr4              28864603 8 - 170955103 cctaatat
i macFas5.chr4             I 2 C 0
s cerAty1.NW_012001495v1     1732184 8 -   2157725 cctaatat
i cerAty1.NW_012001495v1   I 2 C 0
s saiBol1.JH378348            131007 8 -    375362 Tataacat
i saiBol1.JH378348         C 0 I 2785
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       80804 896 -    285216 I
e cebCap1.NW_016108108v1      134712 2544 -    373274 I
e calJac3.chr4             171312653 696 - 171630274 I
e colAng1.NW_012115566v1     1727971 11874 -   3067355 T
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e chlSab2.chr17             28181157 10 -  71996105 I
e macNem1.NW_012011356v1     1852880 16544 -   2996164 T

a score=70056.000000
s hg38.chr6_GL000254v2_alt     17854 27 +   4827813 ataaaaataatatTAGGataagggaat
s panTro5.chr6              28994889 27 + 175400573 ATAAAAATAATATTAGGataagggaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29238588 27 + 173848474 ataaaaataatattaggataagggaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5029416 27 +   6154872 ataaaaataatatTAGGataagggaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74031685 27 + 122973662 ataaaaataatatTAGGataagggaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29174580 27 + 172585720 ataaaaataatatTAGGataagggaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28864611 27 - 170955103 ataaaaataatatTAGGataagggaat
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1732192 27 -   2157725 ataaaaataatatTAGGataagggaat
i cerAty1.NW_012001495v1   C 0 C 0
e saiBol1.JH378348            131015 2785 -    375362 I
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       80804 896 -    285216 I
e cebCap1.NW_016108108v1      134712 2544 -    373274 I
e calJac3.chr4             171312653 696 - 171630274 I
e colAng1.NW_012115566v1     1727971 11874 -   3067355 T
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e chlSab2.chr17             28181157 10 -  71996105 I
e macNem1.NW_012011356v1     1852880 16544 -   2996164 T

a score=1237870.000000
s hg38.chr6_GL000254v2_alt     17881 415 +   4827813 actattgtggtggtaaactgaggaacggaaagactgatacaggagaacaggaggatatttattttaaggtaagcagccactgagtggattcacatccaaaaagttgagcactggccgggcctggtggctcacgcccataatcccagcactttgagaggccaaggctggcagattacctgaggtcaggagttcgagaccagcctggccaacgtggtgaaaccccgtctctactaaaaatacaaaaattagccaggcgtggttgcacatgcttgtaatcccagctactcgggaggctgaggcagaattgcttgagcccaggaggcggaggtgacattgagccaa--------------tatcgtgccactgcactccagcctggccgacagagcaagactctgtctcaaaacaaaacaaacaaacaaaaaa
s panTro5.chr6              28994916 415 + 175400573 actattgttgtggtaaattgaggaacggacagactgatacgggagaacaggaggatatttattttaaggtaagcagccactgagtggattaacatccaaaaagttgagcactggccgggcctggtggctcacgcccataatcccagcaatttgggagcccaaggctggcagattacctgaggtcaggagttcgagaccagcctggccaacgtggtgaaaccccgtctctactaaaaatacaaaaattagccgggcgtgcttgcacacgcttgtaatcccagctactcgggaggctgaggcagaattgcttgagcccaggaggcggaggtgacattgagccaa--------------tatcgtgccactgcactccagcctggccgacagagcaagactctgtctcaaaacaaaacaaacaaacgaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29238615 415 + 173848474 actattgttgtggtaaattgaggaacggacagactgatacgggagaacaggaggatatttattttaaggtaagcagccactgagtggattaacatccaaaaagttgagcactggccgggcctggtggctcacgcccataatcccagcaatttgggagcccaaggctggcagattacctgaggtcaggagttcgagaccagcctggccaacgtggtgaaaccccgtctctactaaaaatacaaaaattagccgggcgtgcttgcacacgcttgtaatcccagctacttgggaggctgaggcagaattgcttgagcccaggaggcggaggtgacattgagccaa--------------tatcgtgccactgcactccagcctggcggacagagcaagactctgtctcaaaacaaaacaaacaaacgaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5029443 414 +   6154872 actattgttgtggtaaactgaggaacggaaagactgatacgggagaacaggaggatatttattttaaggtaa-cagccactgagtggattcacatccaaaaagttgagcactggccgggcctggtggctcacgcccataatcccagcactttgggaggccaaggctggcagattacctgaggtcaggagttcgagaccagcctggccaacgtggtgaaaccccgtctctgccaaaaatacaaaaattagccgggcgtggttgcacacgcttgtaatcccagctactcggaaggctgaggcagaattgcctgagcccaggaggcggaggtgacattgagccaa--------------tatcgtgccactgcactccagcctggccgacagagcaagactctgtctcaaaacaaaacaaacaaacaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74031712 414 + 122973662 actattgttgcagtaaactgaggaatggagagaccgatatgaaagaacaggaggatatttattttaaggtacccacccactgagtggattcacatccaaaaagctaagcactggccgggactggtggctcacgcctgtaatcccagcactttgggaggccaagg-gggcagattacctgaggtcaggagttcgagaccagcctggccaacatggtgaaacgccgtgtctactaaaaatacaaaaattagccgggagtggtggcccacgcttgtaatcccagctactcgggaggctgaggcagaattgcttgagcccaggaggcggaggtgacagtgagccaa--------------gatcgtgccactgcactccagcctggctgacagagcgagactctgtctcaaaacaaaacaaacaaacaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29174607 415 + 172585720 actattgttgcagtaaactgaggaacggagagaccaatatgggagaacaggaggatatttattttaaggtacacaccggctgagtggattcacatccaaaaagctgagcactggccgaacccggtggctcatgcctgtaatcccagtaccttgggaggccaacgcgggcagattacctgaggtcaggagttcaagaccagcctggccaatatggtgaaatcccgtctctactaaaaatacaaaaattagccgggcgtggtggcacacgcttgtaatcccagctactcgggaggctgaggcagaattgcttgagcccaggaggcggaggtgacagtgagccaa--------------gatcgtgccactgcactccagcctccctgacagagcgagactctgtctcaaaacaaaacaaacaaacaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28864638 415 - 170955103 actattgttgcagtaaactgaggaacggagagaccaatatgggagaacaggaggatatttattttaaggtacacaccggctgagtggattcacatccaaaaagctgagcactggccgaacccggtggctcatgcctgtaatcccagcaccttgggaggccaacgcgggcagattacctgaggtcaggagttcaagaccagcctggccaatatggtgaaatcccgtctctactaaaaatacaaaaattagccgggcgtggtggcacacgcttgtaatcccagctactcgggaggctgaggcagaattgcttgagcccaggaggcggaggtgacagtgagccaa--------------gatcgtgccactgcactccagcctccctgacagagcgagactctgtctcaaaacaaaacaaacaaacaaaaaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1732219 429 -   2157725 actattgttgcagtaaactgaggaacggagagaccaatatgggagaacaggagggtatttattttaaggtatacacccgctgagtggattcacatccaaaaagctgagcactggcgggacccggtggctcatgcctgtaatcctagcactctgggaggccaaggcaggcagattacctgaggtcaggagttcgagaccagcctggccaacatggtgaaatcctgtctctactaaaaatacaaaaattagccgggcgtggtggcacacgcttgtaatcacagctactcgggaggctgaggcagaattgcttgagcccaggaggtgaaggtgacagtgagccgagattgtgccactgcgattgtgccactgcactccagcctcaccaacagagggagacactgtctcaaaacaaaacaaacaaatgaaaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28181167 412 -  71996105 ACTATtgttgcagtaaactgaggaacggagagactaatgtgggagaacaggaggatatttattttaaggtatacacccgctgagtggattcacatccaaaaagctgagcaccggccgga-ctggtggctcatgcctgtaatcccagcactttgggaggctgaggcaggcagatgacctgaggtcgggagttcgagaccagcctggccaacatggtgaaatcctgtctctactaaaaatacaaaaattagccgggcatggtggcacacgcttgtaatcccagctactcgggaggctgaggcagaattgcttgagcccaggaggcggaggtgacagtgagccaa--------------gatcgtgccactgcactccagccttgctgacagagggagactc--tctcaaaacaaaacaaacaaacaaaaaa
i chlSab2.chr17            I 10 I 48
e saiBol1.JH378348            131015 2785 -    375362 I
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       80804 896 -    285216 I
e cebCap1.NW_016108108v1      134712 2544 -    373274 I
e calJac3.chr4             171312653 696 - 171630274 I
e colAng1.NW_012115566v1     1727971 11874 -   3067355 T
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e macNem1.NW_012011356v1     1852880 16544 -   2996164 T

a score=1304182.000000
s hg38.chr6_GL000254v2_alt     18296 558 +   4827813 tgctgagcgttgaacaaag----------------acagagcaggagtttttataagcaaaacaaaggcagttaatcatacagtgcttaatttgtggccttgcagctgcgtcaaaagaaaaacaagaactgactaaatacagacatttgtaaaaacagttatgcttaagaagccagggaaaggagtaacagtataggaatttgcctttcc----tttttttcccttcaaccttgttcttg-ggtggggtgggagaagggcgtgtctggaagccgttcctttggccttggcttttcggaaagtgttatcttgtaactgtccttgaagtgagctgctaggcaaacgaaaacttgtttcttttctttttaaccctttcctgttacttttcttggagtgaatgaatgcatatttatttttaaatttctgccttactatgaataactctttacacacaaacttgacaatttagatgagatagactaattccttgaaaaacacaaattaacacaactaactcaatatgtaatacattttttataaccctgtaactattaagggaattaaatttgtaacataattt
s panTro5.chr6              28995331 557 + 175400573 tgctgagcattgaacaaag----------------acagagcaggagtttttataagcaaaacaaaggcagttaatcatacagtgcttaacttgtggccttgcagctgcgtcaaaagaaaaacaaaaactgactaaatacagacatttgt-aaaacagttatgcttaagaagccagggaaaggagtaacagtataggaatttgcctttcc----tttttttcccttcaaccttgttcttg-ggtggggtgggggaagggcgtgtctggaacccattcctttggccttggcttttcggaaagtgttatcttgtaactgtccttgaagtgagctgctaggcaaacgaaaacttgtttcttttctttttaaccctttcctgttacttttcttggagtgaatgaatgcatatttatttttaaatttctgccttactatgaataactctttacacacaaacttgacaatttagatgagatagactaattccttgaaaaacacaaattaacacaactaactcaatatgcaatacattttttataaccctgtaactattaagggaattaaatttgtaacataatta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29239030 556 + 173848474 tgctgagcattgaacaaag----------------acagagcaggagtttttataagcaaaacaaaggcagttaatcatacagtgcttaacttgtggccttgcagctgcgtcaaaagaaaaacaaaaactgactaaatacagacatttgt-aaaacagttatgcttaagaagccagggaaaggagtaacagtataggaatttgcctttcc-----ttttttcccttcaaccttgttcttg-ggtggggtgggggaagggcgtgtctggaacccattcctttggccttggcttttcggaaagtgttatcttgtaactgtccttgaagtgagctgctaggcaaacgaaaacttgtttcttttctttttaaccctttcctgttacttttcttggagtgaatgaatgcatatttatttttaaatttctgccttactatgaataactctttacacacaaacttgacaatttagatgagatagactaattccttgaaaaacacaaattaacacaactaactcaatatgcaatacattttttataaccctgtaactattaagggaattaaatttgtaacataattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5029857 556 +   6154872 tgctgagcattgaacaaag----------------acagagcaggagattttataagcaaaacaaaggcagttaatcatacagtgcttaacttgtggccttgcagctgcgtcaaaagaaaaacaagaactgactaaatacagacatttgt-aaaacagttatgcttaagaagccagggaaaggagtaa-agtataggaatttgcctttct----tttttttcccttcaaccttgttcttg-ggtggggtgggggaagggcgtgtctggaacccattcctttggccttggcttttcggaaagtgttatcttgtaactgtccttgaagtgagctgctaggcagacgaaaacttgtttcttttctttttaaccctttcctgttacttttcttggagtgaatgaatgcatgtttgtttttaaatttctgccttactacgaataactctttacacacaaacttgacaatttagatgagatagactaattccttgaaaaacacaaattaacataactaactcaatatgcaatacattttttataaacctgtaactattaagggaattaaatttgtaacataatta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74032126 568 + 122973662 tgctgagcattgaacacagacaacgctcaaaacacacagagcaggagtttttataagcaaaacaaaggcagttaatcatacagtgcttaacttctggccttgcagctgcatcagaagaaaaataagaactggctaaatacagacatttgt-aaaacagttatgcttaagaagccagggaaaggagtaacagtataggaatttgtctttct----tttttttcccttcaaccttgttcttg-ggtggggtgggggaagggtgtgtctggaacccattcctttagccttggcttttcggaaagtatta-----taactgtccttgaagtgagctgctaggcagaggaaaacttgtttcttttctttttaaccctttcctgttacttttcttggagtgaatgaatgtatatttatttttaaatttctgcctcactatgaataactctttacacacaaacttgacaatttagatgagatagactaattccttgaaaaacacaaattaacacagctaactcaatatgcaatacattttttataaccctgtaactattaagggaattaaatttgtaacataatta
i nomLeu3.chr1a            C 0 I 296
s rheMac8.chr4              29175022 558 + 172585720 agttgagcattgaacaaag----------------acagagcaggagtttttataagcaaaacaaaggcagttaatcaaacagtgcgtaacttctggccttgcagctgtgtccaaagaaaaacaagaactggctaaatacagacatttgt-aaaacagttatgcttaagaagccagggaaaggagtaacagtataggaatttgtctttccctcttttgtttcccttcatccttgctcttgagggggtagaggggaaggggatgtctggaacccattcttttggccttggcttttccgacagtgttatcttacaactgtccttgaagtgagctactaagcagaggaaaacttgtttcttttctttttaacccttgcctgttacttttcttggagtgaatgaatgcatatttatttttaaatttctgcctcactatgaataactctttacacacaaacttgacaatttagatgagatagactaattctttgaaaaacacaaattaacacaacta----aatatgcaatacattttttataaccctgtaactattaagggaattaaatttgtaacattaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28865053 557 - 170955103 agttgagcattgaacaaag----------------acagagcaggagtttttataagcaaaacaaaggcagttaatcaaacagtgcgtaacttctggcctcgcagctgtgtccaaagaaaaacaagaactggctaaatacagacatttgt-aaaacagttatgcttaagaagccagggaaaggagtaacagtataggaatttgtctttccctcttttgtttcccttcagccttgctcttgagggggtagaggggaaggggatgtctggaacccattcttttggccttggcttttccgacagtgttatcttataactgtccttgaagtgagctactaagcagaggaaaacttgtttcttttctttttaacccttgcctgttacttttcttggagtgaatgaatgcatatttatttttaaatttctgcctcactatgaataactctttacacacaaacttgacaatttagatgagatagactaattccttgaaaaacacaaattaacacaacta----aatatgcaatacattttttataaccctgtaactattaagggaattaaatttgtaacatt-aaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1732648 562 -   2157725 agttgagcattgaacaaag----------------acagagcaggagtttttataagcaaaacaaaggcagttaatcaaacagtgcataacttctggccttgcaactgcgtccaaagaaaaacaagaactggctaaatacagacatttgt-aaaacagttatgcttaagaagccagggaaaggagtaacagtataggaatttgcctttccctcttttgtttcccttcaaccttgctcttgaggtggtataggggaaggggatgtctggaacccattcttttggccttggtttttcggacagtgttatcttataactgtccttgaagtgagctactaagcagaggaaaacttgtttcttttctttttaacctttgcctgttacttttcttggggtgaatgaatgcatatttatttttaaatttctgcctcactatgaataactctttacacacaaacttgacaatttagatgagatagactaattccttgaaaaacacaaattaacacaactaacttaatatgcaatacattttttataaccctgtaactattaagggaattaaatttgtaacattaaaa
i cerAty1.NW_012001495v1   C 0 C 0
e saiBol1.JH378348            131015 2785 -    375362 I
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       80804 896 -    285216 I
e cebCap1.NW_016108108v1      134712 2544 -    373274 I
e calJac3.chr4             171312653 696 - 171630274 I
e colAng1.NW_012115566v1     1727971 11874 -   3067355 T
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e chlSab2.chr17             28181579  48 -  71996105 I
e macNem1.NW_012011356v1     1852880 16544 -   2996164 T

a score=670923.000000
s hg38.chr6_GL000254v2_alt     18854 281 +   4827813 aaaaaaaaaatcaagaatctggccgggcgtggtggctcatggctgtaatcccagcactttgggaggccaaggcgggctgatcacctgaggtcagaagttcgagaccagcctggctaacatgctgaaa-ccccgtctctact-aaagatacaaaaattagccggatgtggtggcaggcacctgtaatcccagctacttgggaggctgaggcaggagaatcgtttgaacctgggaggcagaggttgcagtgagccaagatcgcaccattgcactccagcctggag
s panTro5.chr6              28995888 281 + 175400573 aaaaaaaaaatcaagaatctggccgggcgcggtggctcatggctgtaatcccagcactttgggaggccaaggcgggctgatcacctgaggtcagaagttcgagaccagcctggctaacatgctgaaa-ccccgtctctact-aaagatacaaaaattagctggatgtggtggcaggcacctgtaatcccagctacttgggaggctgaggcaggagaatcgtttgaacctgggaggcagaggttgcagtgagccaagatcgcaccattgcactccagcctggag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29239586 280 + 173848474 -aaaaaAAAATCAAGAATCTggccgggcgcggtggctcatggctgtaatcccagcactttgggaggccaaggcgggctgatcacctgaggtcagaagttcgagaccagcctggctaacatgctgaaa-ccccgtctctact-aaagatacaaaaattagccggatgtggtggcaggcacctgtaatcccagctacttgggaggctgaggcaggagaatcgtttgaacctgggaggcagaggttgcagtgagccaagatcgcaccattgcactccagcctggAG
i panPan2.chr6             C 0 M 147
s gorGor5.CYUI01015250v1     5030413 280 +   6154872 -aaaaaaaaatcaagaatctggccgggcgcggtggctcatggctgtaatcccagcactttgggaggccaaggcgggctgatcagctgaggtcagaagttcgagaccagcctggctaacatgctgaaa-ccccgtctctact-aaagatacaaaaattagccggatgtggtggcaggcacctgtaatcccagctacttgggaggctgaggcaggagaatcgtttgaacctgggaggcagaggttgcagtgagccaagatcgcaccattgcactccagcctggag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74032990 281 + 122973662 aaaaaaaaaaTCAGGAATCTggccgggcgcggtggctcacggctgtaatcccagcactttgggaggccgaggcgggaggatcacctgaggtcagaagttcgagaccagcctggctaacatgctgaaa-ccccatctctact-aaaaatacaaaaattagccggatgtggtggcaggcgcctgtaatcccagctgcttgggaggctgaggcaggagaatcgtttgaacccaggaggcagaggttgcagtgagccgagatcgcaccattgcactccagcctggag
i nomLeu3.chr1a            I 296 C 0
s rheMac8.chr4              29175580 274 + 172585720 aaaaaaaaaatcaggaatctggccgggcgc--------ttggttgtaataccagcactttgggaggctgaggcgggcagatgacctgaggtcgggagttcgagaccagcctggccaacatgctgaaa-ccccgtctctactaaaagatacaaaaattagccggatgtggtggcaggcgcctgtaatcccagctacttgggaggctgaggcaggagaatcgtttgaacccgggaggcggaggttgcagtgagccgagatcacgccattgcactccagcctggag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28865610 275 - 170955103 aaaaaaaaaatcaggaatctggccgggcgcg-------ttggttgtaataccagcactttgggaggctgaggcgggcagatgacctgaggtcgggagttcgagaccagcctggccaacatgctgaaa-ccctgtctctactaaaagatacaaaaattagccggatgtggtggcaggcgcctgtaatcccagctacttgggaggctgaggcaggagaatcgtttgaacccgggaggcggaggttgcagtgagccgagatcacgccattgcactccagcctggag
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1733210 276 -   2157725 aaaaaaaaaatcaggaatctggctgggcgtg-------ttggttgtaatcccagcactttgggaggctgaggcgggcagatcacctgaggtcgggagttcgagaccagcctggccaacatgctgaaacccccgtctctactaaaagatacaaaaattagccggatgtggtggcaggcgcctgtaatcccagctacttgggaggctgaggcaggagaatcgtttgaacccgggaggcggaggttgcagtgaaccgagatcacgccattgcactccagcctggag
i cerAty1.NW_012001495v1   C 0 C 0
e saiBol1.JH378348            131015 2785 -    375362 I
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       80804 896 -    285216 I
e cebCap1.NW_016108108v1      134712 2544 -    373274 I
e calJac3.chr4             171312653 696 - 171630274 I
e colAng1.NW_012115566v1     1727971 11874 -   3067355 T
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e chlSab2.chr17             28181579  48 -  71996105 I
e macNem1.NW_012011356v1     1852880 16544 -   2996164 T

a score=262214.000000
s hg38.chr6_GL000254v2_alt     19135 156 +   4827813 gccaagagcaagacttcgttt---aaaaaaaa--------------------------aaaatcaggaatcttcgaatccaagaaaatttcactgaagaattctaagaagttcttaaggaggccaggggcggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggcgaatcatg
s panTro5.chr6              28996169 157 + 175400573 gccaagcgcaagacttcgttt--aaaaaaaaa--------------------------aaaatcaggaatctttgaatccaagaaaatttcactgaagaattctaagaagttcttaaggaggccaggggcggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggcgaatcatg
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5030693 159 +   6154872 gccaagagcaagacttcgtttaaaaaaaaaaa--------------------------aaaatcaggaatcttcgaatccaagaaaatttcactgaagaattctaagaagttcttaaggaggccaggggcggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggcgaatcatg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74033271 156 + 122973662 gacaagagcatgacttcgttt---taaaaaaa--------------------------aaaatcaggaatcttcgaacccaagaaaatttcactgaagaattctaagaagtgcttaaagaagccaggcgcggtgtctcatgcctctaatcccagcactttgggaggccgaggcggacgaatcatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29175854 185 + 172585720 gacaacagcaagacttggttaaaaaaaaaaaaaaacaaagaaaagaaaagaaaagaaaaaaatcaggaatcttcgaatctaagaaaatttcactaaagaattctaagaagtgcttaaagaagccaggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggagggcaaatcatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28865885 185 - 170955103 gacaacagcaagacttggttaaaaaaaaaaaaaaacaaagaaaagaaaagaaaagaaaaaaatcaggaatcttcgaatctaagaaaatttcactaaagaattctaagaagtgcttaaagaagccaggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggagggcaaatcatg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1733486 181 -   2157725 gacaacagcaagactTGGTTTAAaaaaaaaaa----aaagaaaagaaaagaaaagaaaaaaatcaggaatcttcgaatctaagaaaatttcactgaagaattctaagaagtgcttaaagaagccaggcgcggtggctcatgcctgtaatcccagcactttgggaggcagaggagggtgaatcatg
i cerAty1.NW_012001495v1   C 0 C 0
e saiBol1.JH378348            131015 2785 -    375362 I
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       80804 896 -    285216 I
e cebCap1.NW_016108108v1      134712 2544 -    373274 I
e calJac3.chr4             171312653 696 - 171630274 I
e colAng1.NW_012115566v1     1727971 11874 -   3067355 T
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e chlSab2.chr17             28181579  48 -  71996105 I
e macNem1.NW_012011356v1     1852880 16544 -   2996164 T
e panPan2.chr6              29239866 147 + 173848474 M

a score=338747.000000
s hg38.chr6_GL000254v2_alt     19291 152 +   4827813 aggtcagaagaccgagaccatcctggctaacacggtgaaaccccgtctctactgaaaaaacaaaaaattagctgggcgtggtggcagggagcctgtagtcccaactactc-----------gctggagaatggcgtgaa-cccgggaggcggagcttgcagtga
s panTro5.chr6              28996326 152 + 175400573 aggtcagaagaccgagaccatcctggctaatacggtgaaaccccgtctctactgaaaatacaaaaaattagccgggcgtggtggcagggagcctgtagtcccaactactc-----------gctggagaatggcgtgaa-cccgggaggcggagcttgcagtga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29240015 152 + 173848474 aggtcagaagaccgagaccatcctggctaatacggtgaaaccccgtctctactgaaaatacaaaaaattagccgggcgtggtggcagggagcctgtagtcccaactactc-----------gctggagaatggcgtgaa-cccgggaggcggagcttgcagtga
i panPan2.chr6             M 147 C 0
s gorGor5.CYUI01015250v1     5030852 152 +   6154872 aggtcagaagatcgagaccatcctggctaacacggtgaaaccccgtctctactgaaaacacaaaaaattagccgggcttggtggcagggagcctgtagtcccaactactc-----------gctggagaatggcgtgaa-cccgggaggcggagcttgcagtga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74033427 163 + 122973662 aggtcagaatatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaatccaaaaaattagccgggcgtggtggcaggaagcctgtagtcccaactactcgggatgctgaggcaagagaatggcgtgaa-cccgggaggcggagcttgcagtga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29176039 163 + 172585720 agatcaggagattgagaccatcctggctaatacggtgaaaccctgtctctactaaaaatacaaaaaattagccgggtgtggtggctggcgg-ctgttgtcccagctactcgggaggctgaggcaggagaatggcgcgaaccccgggaggcggagcctgcagtga
i rheMac8.chr4             C 0 I 18
s macFas5.chr4              28866070 163 - 170955103 agatcaggagattgagaccatcctggctaatacggtgaaaccctgtctctactaaaaatacaaaaaattagccgggtgtggtggccggcgg-ctgttgtcccagctactcgggaggctgaggcaggagaatgacgcgaaccccgggaggcggagcctgcagtga
i macFas5.chr4             C 0 I 18
s cerAty1.NW_012001495v1     1733667 162 -   2157725 agatcaggagattgagaacatcctggctaacacggcgaaaccctgtctctactaaaaatacaaaaaattagccgggtgtggtggctggcgg-ctgtagtcccagctactcgggaggctgaggcaggagaatggcgcgaa-cccgggaggaggagcctgcagtga
i cerAty1.NW_012001495v1   C 0 I 18
e saiBol1.JH378348            131015 2785 -    375362 I
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       80804 896 -    285216 I
e cebCap1.NW_016108108v1      134712 2544 -    373274 I
e calJac3.chr4             171312653 696 - 171630274 I
e colAng1.NW_012115566v1     1727971 11874 -   3067355 T
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e chlSab2.chr17             28181579  48 -  71996105 I
e macNem1.NW_012011356v1     1852880 16544 -   2996164 T

a score=90226.000000
s hg38.chr6_GL000254v2_alt     19443 36 +   4827813 cactccaacctgggcgacagagcgcgact-ccgtctc
s panTro5.chr6              28996478 36 + 175400573 cactccagcctgggcgacagagcgcgact-ccgtctc
i panTro5.chr6             C 0 I 1
s panPan2.chr6              29240167 35 + 173848474 cactccagcctgggcgacagagcgcgact-ccgtct-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5031004 36 +   6154872 cactccagcctgggcgacagagcgcgact-ccgtctc
i gorGor5.CYUI01015250v1   C 0 I 6
s nomLeu3.chr1a             74033590 32 + 122973662 cactccagcctag----cagagcgcgact-ccatctc
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4              29176220 37 + 172585720 cactgcagcctgggcgacagaaggcgactcccgtctc
i rheMac8.chr4             I 18 I 7
s macFas5.chr4              28866251 37 - 170955103 cactgcagcctgggcgacagaaggcgactcccgtctc
i macFas5.chr4             I 18 I 7
s cerAty1.NW_012001495v1     1733847 37 -   2157725 cactgcagcctgggcgacggaaggtgactcccgtctc
i cerAty1.NW_012001495v1   I 18 I 7
s colAng1.NW_012115566v1     1716097 36 -   3067355 cactgcagcctgggcgacagaaggcgact-ccgtctc
i colAng1.NW_012115566v1   T 11874 C 0
e saiBol1.JH378348            131015 2785 -    375362 I
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       80804 896 -    285216 I
e cebCap1.NW_016108108v1      134712 2544 -    373274 I
e calJac3.chr4             171312653 696 - 171630274 I
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e chlSab2.chr17             28181579 48 -  71996105 I
e macNem1.NW_012011356v1     1852880 16544 -   2996164 T

a score=29568.000000
s hg38.chr6_GL000254v2_alt     19479 9 +   4827813 aaaaaaaaa
s panTro5.chr6              28996515 9 + 175400573 aaaaaaaaa
i panTro5.chr6             I 1 C 0
s panPan2.chr6              29240202 7 + 173848474 --acaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5031046 9 +   6154872 aaaaaaaaa
i gorGor5.CYUI01015250v1   I 6 C 0
s nomLeu3.chr1a             74033623 9 + 122973662 aaaaaaaaa
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4              29176264 9 + 172585720 aaaaaaaaa
i rheMac8.chr4             I 7 C 0
s macFas5.chr4              28866295 9 - 170955103 aaaaaaaaa
i macFas5.chr4             I 7 C 0
s cerAty1.NW_012001495v1     1733891 9 -   2157725 aaaaaaaaa
i cerAty1.NW_012001495v1   I 7 C 0
s chlSab2.chr17             28181627 9 -  71996105 aaaaaaaaa
i chlSab2.chr17            I 48 C 0
s colAng1.NW_012115566v1     1716133 8 -   3067355 -aaaaataa
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            131015 2785 -    375362 I
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       80804 896 -    285216 I
e cebCap1.NW_016108108v1      134712 2544 -    373274 I
e calJac3.chr4             171312653 696 - 171630274 I
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e macNem1.NW_012011356v1     1852880 16544 -   2996164 T

a score=12654.000000
s hg38.chr6_GL000254v2_alt     19488  9 +   4827813 aaaaa---------------atgg
s panTro5.chr6              28996524  9 + 175400573 aaaaa---------------atgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29240209  9 + 173848474 aaaaa---------------aTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5031055  9 +   6154872 aaaaa---------------atgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74033632  9 + 122973662 aaaaa---------------gtgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29176273 24 + 172585720 aaaaaaaaaaaaaaaaaaaggtgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28866304 24 - 170955103 aaaaaaaaaaaaaaaaaaaggtgc
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1733900  9 -   2157725 aaaaa---------------gtgc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28181636  9 -  71996105 aaaaa---------------GTGC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1716141 18 -   3067355 ataaataaataaaa------GTGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171313349  9 - 171630274 aagaa---------------gcac
i calJac3.chr4             I 696 C 0
e saiBol1.JH378348            131015 2785 -    375362 I
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       80804 896 -    285216 I
e cebCap1.NW_016108108v1      134712 2544 -    373274 I
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e macNem1.NW_012011356v1     1852880 16544 -   2996164 T

a score=2766315.000000
s hg38.chr6_GL000254v2_alt     19497 541 +   4827813 ttaaagaattaaaacaaggtctacacaatcta-ttctgaaaaaaacagaagaggaca-aaaaactttccatttatttatgaagttaatagtatcctgatgctaaaaccaggtaaatacagtacaaaataatgagtattggtgcataaatacttaccaaaatattatcaaatagaattcagg-aatatataagaagcattatacaccatgatcaagtggggtttattccagagacgtaagactaggtaa----atttagaaacaatcactgcaatccaccatattaacaggct-aaaaa-ataaaatcacgtgatca-tatcacagtagaaaaagaatttgtcaaacttcaatagctactcatgac-----aaa--aagtctcagaaaaataggaatagagAACAGCTAACACTGTACATCACGGTAAAAGACAGAATGtgtattagtccgttttcacactgctatgaagacactacctgagactgggtaa-----tttttttttttttttaagatggagtcttgctctgtcgcccaggctggagggcagtggcctcctctcgg
s panTro5.chr6              28996533 540 + 175400573 ttaaagaattaaaacaaggtctacacaatcta-ttctgaaaaaaacagaagaggaca-aaaaactttccatttatttatgaaggtaatagtatcctgatgccaaaacaaggtaaatacagtacaaaataatgagtattggtgcataaatacttaccaaaatattatcaaatagaattcagg-aatatataagaagcattatacaccatgatcaagtggggtttattccagagacgtaagactaggtaa----atttagaaacaatcactgcaatccaccatattaacaggct-aaaaa-ataaaatcacgtgatca-tatcacagtagaaaaagcatttgtcaaacttcaatagctactcatgac-----aaa--aagtctcagaaaaataggaatagagAACAGCTAACACTGTACATCACGGTAAAAGACAGAATGtgtattagtccgttttcacactgctatgaagacactacctgagactgggtaa------ttttttttttttttaagatggagtcttgctctgtcgcccaggctggagggcagtggcctcctctcgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29240218 539 + 173848474 TTAaagaattaaaacaaggtctacacaatcta-ttctg-aaaaaacagaagaggaca-aaaaactttccatttatttatgaaggtaatagtatcctgatgccaaaaccaggtaaatacagtacaaaataatgagtattggtgcataaatacttaccaaaatattatcaaatagaattcagg-aatatataagaagcattatacaccatgatcaagtggggtttattccagagacgtaagactaggtaa----atttagaaacaatcactgcaatccaccatattaacaggct-aaaaa-ataaaatcacgtgatca-tatcacagtagaaaaagcatttgtcaaacttcaatagctactcatgac-----aaa--aagtctcagaaaaataggaatagagAACAGCTAACACTGTACATCACGGTAAAAGACAGAATGtgtattagtccgttttcacactgctatgaagacactacctgagactgggtaa------ttttttttttttttaagatggagtcttgctctgtcgcccaggctggagggcagtggcctcctctcgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5031064 542 +   6154872 ttaaagaattaaaacaaggtctacacaatcta-ttctgaaaaaaacagaagaggaca-aaaatctttccatttatttatgaaggtaatagtatcctgatgccaaaaccaggtaaatacagtacaaaataatgagtattggtgcataaatacttaccaaaatattatcaaatagaattcagg-aatatataagaagcattatacaccatgaccaagtggggtttattccagagacgtaagactaggtaa----atttagaaacaatcactgcaatccagcatattaacaggct-aaaaa-ataaaatcacatgatca-tatcagagtagaaaaagcatttgtcaaacttcaatagctactcatgac-----aaa--aagtctcagaaaaataggaatagagAACAGCTAACACTGTACATCACGGTAAAAGACAGAATGtgtattagtccgttttcacactgctatgaagacactacctgagactgggtaa---tttttttttttttttttaagatggagtcttgctctgtcgcccagg-tggaggacagtggcctcctctcgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74033641 524 + 122973662 ttaaagaattttaacaaggtctacacaatctatttcttaaaaaaacagaagaggacagaaaagctttccatttattta---------------cctgatgccaaaaccaggtaaatacagtacaaaacaatgagtattggtgcataaa----taccaaaatattatcaaatagaattcagc-aatatagaagaagcattatacaccatgaccaagtggggtttattccagagacgtaagactaggtaa----atttagaaacagtcactgcaatccaccacattaacaggctaaaaaa-ataaaatcacatggtca-tatcacagtagaaaaagcatttgtcaaacttcaatagctactcatgac-----aaa--aagtctcagaaaaataggaatagagAACAGCTAACACTGTACATCATGGTAAAAGACAGAATGtgtattagtccgttttcacactgctttgaagacactacctgtgactgggtaa------tttttttttattttaagatggagtcttgctctgtcgcccaggctggagtgcagtggagtcctctcgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29176297 538 + 172585720 ttaaagaattaaaacaaggtctacacaatcta-ttctg-aaaaaacagcagaggaca-gaaaactttccatttttttatgaaggtaatagtatcctgttgccaaaaccaggtaaatacagtacaaaacgatgggtattggtgc----atacttaccaaaatattatcaaatagaattcagc-aatatataagaagcattatacaccgtgaccaagtggggtttattccagagatgtaagactaggtaa----atttagaaacaatcactgcaatccaccaggttaacaggct-aaaaa-ataaaatcacacaatcgttatcacagtagaaaaagcatttgtcaaacttcaatagctactcatgac-----aaa--aagtctcagaaaaataggaatagagaagagctAACACTGCACATCACATTAAAAGACAGAATGtgtgttagtccgttttcacactgctatgaaaacactacccaagactcagtaa----tttttttttttttttttagatggagtcttgctctgtagcccaggctggagtgcaatggtgtcctctcgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28866328 538 - 170955103 ttaaagaattaaaacaaggtctacacaatcta-ttctg-aaaaaacagaagaggaca-gaaaactttccatttttttatgaaggtaatagtatcctgttgccaaaaccaggtaaatacagtacaaaacgatgggtattggtgc----atacttaccaaaatattatcaaatagaattcagc-aatatataagaagcattatacaccgtgaccaagtggggtttattccagagatgtaagactaggtaa----atttagaaacaatcactgcaatccaccaggttaacaggct-aaaaa-ataaaatcacacaatcgttatcacagtagaaaaagcatttgtcaaacttcaatagctactcatgac-----aaa--aagtctcagaaaaataggaatagagaagagctAACACTGCACATCACATTAAAAGACAGAATGtgtgttagtccgttttcacactgctatgaaaacactacccaagactcggtaa----tttttttttttttttttagatggagtcttgctctgtagcccaggctggagtgcaatggtgtcctctcag
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1733909 546 -   2157725 ttaaagaattaaaacaaggtctacacaatcta-ttctg-aaaaaacagaagaggaca-gaaaactttccatatttttatgaaggtaatagtatcctgttgccaaaaccaagtaaatacagtacaaaacgatgggttttggtgcataaatacttaccaaaatattatcaaatagaattcagc-aatatataagaagcattatacaccatgaccaagtggggtttattccagagatgtaagactaggtaa----atttagaaacaatcactgcaatccaccaggttaacaggct-aaaaa-ctaaaatcacacaatcgttatcacagtagaaaaagcatttgtcaaacttcaatagctactcatgac-----aaa--aagtctcagaaaaataggaatagagaggagctAACACTGCACATCACGTTAAAAGACAGAATGtgtattagtccgttttcacactgctatgaaaacactacccaagactcggtaatttttttttttttttttttttagatggagtcttgctctgtagcccaggctggagtgcagtggtgtcctctcgg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28181645 541 -  71996105 TTAaataattaaaacaaagtctacacaatcta-ttctg-aaaaaacagaagaggaca-gaaaactttccatttttttatgaaggtaatagtatcctgttgccaaaaccaggtaactacagtacaaaacgatgggtattggtgcataaatacttaccaaaatattatcaaatagaattcagc-aatatataagaagcattatacaccatgaccaagtggggtttattccagagatgtacgactaggtaa----atttagaaacaatcactgcaatccaccaggttaacaggct-aaaaa-ataaaatcacacgatcgttatcacagtagaaaaagcatttgtcaaacttcaatagctactcatgac-----aaa--aagtctcagaaaaataggaatagagaagagctAACACTGCACATCATGTTAAAAGACAGAATGtgtgttagtccattttcacactgctatgaaaacactacccaagactaggtaa-----ttttttttttttttttagatggagtcttgctctgtagcccaggctggagtgcagtggtgtcttctcga
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1716159 538 -   3067355 TTAaagaattaaaacaaggtctacacaatcta-ttctg-aaaaaacagaagaggaca-gaaaactttccatttttttatgacggtaatagtatcctgttgccaaaaccaggtaaatacagtacaaaacgatgagtattggtgcataaatacttaccaaaatattatcaaacagaattcagc-aatatataagaagcattatacaccatgaccaagtggggtttattccagagatgtcagagtaggtaa----atttagaaacaaccactgcaatccaccaggttaacaggct-aaaaa-ataaaatcacaccatcgttatcacagtagaaaaagcatttgtcaaacttcaatagctactcatgac-----aaa--aagtctcagaaaaataggaatagagaagagctAACACTGTACATCACCTTAAAAGACAGAATGtgtgttagtccattttcacactgctatgaaaacactacccaaggctcggtaa--------tttttttttttttagatggagtcttgctctgtagcccaggctggagtgcagtggtgtcctctcgg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171313358 537 - 171630274 ttaaagaattaaaacatggtctacacaatcta-ttct--aataaacagaag---aca-gaaaac-ttccattcatttatgaaggt-atattatcctgatgccaaaaccaggtaaatacagtacaaaataataagtattggtgcacaaatacttaccaaaatgttatcaaatagaattcagc-aatatacaagaagcattatacaccatgaccaagtggggtttattccaggagtgtgagactaggtag----atttaagaacaatcactgcaattcaccacattaacaggat-aaaaacacacacacacacaatca-tatcaaagtagaaaaagcatttgtcaaactttaatagctactcatgattaaaaaaaagaagtctcagaaaaataggaatagagAACAGCTAACACTGTGCTTCATGGTAAAAGACAGAATGtgtattagtttgttttcacactgctatgaagacactacctgagactgtgtat----------tttttttttttagatggcacctccctctgctacccaggctggaatacagtggcatgatcttgg
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1       81700 543 -    285216 ttaaagaattaaaacacggtctacacaatcta-ttct--aataaacagaagagaaca-gaaaactttccattcttttatgaaggtaatattatcctgatgccaaaaccaggtaaatacagtacaaaataaaaagcattggtgcataaatacttaccaaaatattatcaaatagaattcagcaaatacataagaagcattatacaccatgaccaagtggggtttattccagaggtgtaagactaggtagacttacttaagaacaatcactgcaattcaccacattaacaggat-aaaa--acacacacacacgatca-tatcaaagtagaaaaagcatttgtcaaactttaatagctacttatgatttaaaaaa--aagtctcagaaaaataggaatagaAAACAGCTAACACTGTGCTTCATGGTAAAAGACAGAATGtgtattagtccgttttcacactgctatgaagacactacccaagactgggtat----------tttttttttttagatggcacctccctctgctacccaggctggaatgcagtggcatgatcttgg
i aotNan1.NW_018494050v1   I 896 C 0
e saiBol1.JH378348            131015 2785 -    375362 I
e otoGar3.GL873742           1486015 7497 -   2232465 T
e cebCap1.NW_016108108v1      134712 2544 -    373274 I
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I
e macNem1.NW_012011356v1     1852880 16544 -   2996164 T

a score=770058.000000
s hg38.chr6_GL000254v2_alt     20038 119 +   4827813 ctcatttcaacctccgcctcctgggttcaagcaattcttctgcctcagtctcccgagtggctgggactacaggcgcaggccaccatgcccggctaatttttgtatttttagtagagaca
s panTro5.chr6              28997073 119 + 175400573 ctcatttcaacctccgcctcctgggttcaagcaattcttctgcctcagtctcccgagtggctgggactacaggcgcaggccaccatgcccggctaatttttgtatttttagtagagaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29240757 119 + 173848474 ctcatttcaacctccgcctcctgggttcaagcaattcttctgcctcagtctcccgagtggctgggactacaggcgcaggccaccatgcccggctaatttttgtatttttagtagagaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5031606 119 +   6154872 ctcatttcaacctccgcctcctgggttcaagcaattcttctgcctcagtctcccgagtggctgggactacaggcgcaggccaccatgcccggctaatttttgtatttttagtagagaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74034165 116 + 122973662 ctcatttcaacctctgcctcctgggttcaagcaa---ttctgcctcattctcccgagtggctgagactacaggcgcaggccaccacgcccggctaatttttgtgtttttagtagagacg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29176835 119 + 172585720 ctcatttcaacctctgcctcctgggttcaagcaattcttctgcctcagtctcccgagtggctgggactacaggcgcaggccaccatgcccggctaatttttgtatttttagtagagacg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28866866 119 - 170955103 ctcatttcaacctctgcctcctgggttcaagcaattcttctgcctcagtctcccgagtggctgggactacaggcgcaggccaccatgcctggctaatttttgtatttttagtagagacg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1836336 119 -   2996164 ctcatttcaacctctgcctcctgggttcaagcaattcttctgcctcagtctcccgagtggctgggactacaggcgcaggccaccatgcccggctaatttttgtatttttagtagagacg
i macNem1.NW_012011356v1   T 16544 C 0
s cerAty1.NW_012001495v1     1734455 119 -   2157725 ctcatttcaacctctgcctcctggtttcaagcaattcttctgcctcagtctcccgagtggctgggactacaggcgcaggccaccatgcccagctaacttttgtgtttttagtagagaca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28182186 118 -  71996105 ctca-ttcaacctctgcctcctgggttcaagcaattcttctgcctcagtctcccgagtggctgggactacaggtgcaggccaccatgcccggctaatttttgtatttttagtagataca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1716697 119 -   3067355 ctcatttcaacttctgcctccttggttcaagcaattcttctgcctcagtctcccgagtggctgggactacaggcgcaggccactatgcctggctaatttttgtatttttagtagatacg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171313895 118 - 171630274 ctcactgcaatctccacctcccaggttcaagcgatttttctgcctcagcctctggagcagctgggactacaggcacatgccaccacacctgg-taatttttatatttttagtagaaaca
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1       82243 119 -    285216 ctcactgcaacctccacctcccaggttcaagcgatttttctgcctcagcctctagagtagctgggactacaagcacatgccaccacacctggctaatttttgtatttttagtagaaaca
i aotNan1.NW_018494050v1   C 0 C 0
e saiBol1.JH378348            131015 2785 -    375362 I
e otoGar3.GL873742           1486015 7497 -   2232465 T
e cebCap1.NW_016108108v1      134712 2544 -    373274 I
e manLeu1.NW_012104165v1     1826279 11850 +   2316924 I

a score=3624044.000000
s hg38.chr6_GL000254v2_alt     20157 493 +   4827813 gggtttcaccgtattggtcaggctggtctggaactcctgaactcatgatccgcccgcctctgcctcccaaagtgctgggattcccggcgtgagccactgtgt---------ctgggtaattgataaaggaaataggtttaattgagtcaca--------tagctgaggaggcttcgggaaacttacaatcatggcggaagggaaatgggaagcaaggaccttctttacatgacagcagaagaaagaagtatgagcaaaagaggaa-cttgccaaacacttatgaaaccatcagatctcatgagaactcactcactatcaccagaacagcatgggggaagccaccc-----ccatgatccaactacctcccaccaggtttctcccacaaagtcaaaggaattagaataattatttaaaatctaggagggaaAAACAGTCTACCTGATTTCAAGACTATTTCATTACATTGTTGTATTC--------TTGTATTATTGtattattactacagtaattaagactgta
s panTro5.chr6              28997192 493 + 175400573 gggtttcgccgaattggtcaggctggtctggaactcctgaactcatgatccgcccgcctctgcctcccaaagtgctgggattcccggcgtgagccactgtgt---------ctgggtaattgataaaggaaataggtttaactgagtcaca--------tagctgaagaggcttcgggaaacttacaatcatggcggaagggaaatgggaagcaaggaccttctttacgtgacagcagaagaaggaagtatgagcaaaagaggaa-cttgccaaacacttatgaaaccatcagatctcatgagaactcactcactatcaccagaacagcatgggggaggccatcc-----ccatgttccaactacctcccaccaggtttctcccACaaagtcaaaggaattaaaataagtatttaaaatctaggagggaaaaacagtctacctgatttcaagactatttcattacattgttgtattc--------ttgtactattgtattattactacagtaattaagactgta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29240876 493 + 173848474 gggtttcgccgaattggtcaggctggtctggaactcctgaactcatgatccgcccgcctctgcctcccaaagtgctgggattcccggcgtgagccactgtgt---------ctgggtaattgataaaggaaataggtttaactgagtcaca--------tagctgaagaggcttcgggaaacttacaatcatggcggaagggaaatgggaagcaaggaccttctttacgtgacagcagaagaaggaagtatgagcaaaagaggaa-cttgccaaacacttatgaaaccatcagatctcatgagaactcactcactatcaccagaacagcatgggggaggccatcc-----ccatgatccaactacctcccaccaggtttctcccACaaagtcaaaggaattaaaataagtatttaaaatctaggagggaaaaacagtctacctgatttcaagactatttcattacattgttgtattc--------ttgtactattgtattattactacagtaattaagactgta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5031725 493 +   6154872 gggtttcaccgtattggtcaggcaggtctggaactcctgaactcatgatccacccgcctctgcctcccaaagtgctgggattaccggcgtaagccactgtgt---------ctgggtaattgataaaggaaataggtttaattgagtcaca--------tagctgaggaggcttcgggaaacttacaatcatggcggaagggaaatgggaagcaaggaccttctttacatgacagcagaagaaagaagtatgagcaaaagaggaa-cttgccaaacacttatgaaaccatcagatctcatgagaactcactcactatcaccagaacagcatgggggaagccaccc-----ccatgatccaactacctcccatcaggtttctcccACaaagtcaaaggaattagaataattatttaaaatctaggaggaaaaaacagtctacctgatttcaagactatttcattacattgttgtattc--------ttgtactattgtattattactacagtaattaagactgta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74034281 493 + 122973662 gggtttcaccgtattggtcaggctggtctggaactcctgaactcatgatccacccgcctcagcctcccaaagtgctgggattaccggcgtgagccactgtgt---------ctgggtaattgataaaggaaataggtttaattgagttaca--------tagctgaggaggcttcaggaaacttacaatcatggcagaagggaaatgggaagcaaggaccttctttccatgacagcagaagaaagaagtatgagcagaagaggaa-cttgccaaacacttatgaaaccatcagatctcatgagaactcactcactatcaccagaacagcatgggggaagccaccc-----ccatgatccaactgcctgccaccaggtttctcccacaaagtcaaaggaattagaataattatttaaaatctaggaggaacaaataGTCTACCTGATTTCAAGACTATTTCATTACATTGTTGCATTC--------TTGTACTATTGtattattactacagtaattaagactgta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29176954 518 + 172585720 gggtttcaccatattggtcaggctggtctggaactccagaacttatgatccgcccgcctcagcctcccaaagtgcttggattaccggtgtgagccactgtgttgggtgagactgggtaattgataaaggaaataggtttaagtgagtcacagtttcacatagttgaggaggcttcaggaaacttacaattacggcagaaaggaaatgggaagcaaggatcttctttacatgacagcaggagaaagaagtatgagcaaaagaggaa-cttgccaaacacttaggaaaccatcagatctcatgagaactcactcactatcaccagaacaacatgagggaagccaccc-----ccatgatccaaccacctcccaccaggtttctcccacaaaatcaaaggaattaAGATAATCATTTAAAATCTAGGAGGAAAAAACAATCCACCTGATTTCAAGACTATTGTATTACACTGGTGTATTCTCGTACTATTGTATTATTGtattattactacagtaattaagactgta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28866985 518 - 170955103 gggtttcaccatattggtcaggctggtctggaactccagaacttatgatccgcccgcctcagcctcccaaagtgcttggattaccggtgtgagccactgtgttgggtgagactgggtaattgataaaggaaataggtttaagtgagtcacagtttcacatagttgaggaggcttcaggaaacttacaattacggcagaaaggaaatgggaagcaaggatcttctttacatgacagcaggagaaagaagtatgagcaaaagaggaa-cttgccaaacacttaggaaaccatcagatctcatgagaactcactcactatcaccagaacaacatgagggaagccaccc-----ccatgatccaaccacctcccaccaggtttctcccACAAAATCAAACGAATTAAGATAATCATTTAAAATCTAGGAGGAAAAAACAATCCACCTGATTTCAAGACTATTGTATTACACTGGTGTATTCTCGTACTATTGTATTATTGtattattactacagtaattaagactgta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1836455 518 -   2996164 gggtttcaccatattggtcaggctggtctggaactccagaacttatgatccgcccgcctcagcctcccaaagtgcttggattaccggtgtgagccactgtgttgggcgagactgggtaattgataaaggaaataggtttaagtgagtcacagtttcacatagttgaggaggcttcaggaaacttacaattacggcagaagggaaatgggaagcaaggatcttctttacatgacagcaggagaaagaagtatgagcaaaagaggaa-cttgccaaacacttaggaaaccatcagatctcatgagaactcactcactatcaccagaacaacatgggggaagccatcc-----ccacgatccaaccacctcccaccaggtttctcccacaaaatcaaaggaattaAGATAATCATTTAAAATCTAGGAGGAAAAAACAATCCACCTGATTTCAAGACTATTGTATTACACTGGTGTATTCTCGTACTATTGTATTATTGtattattactacagtaattaagactgta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1734574 517 -   2157725 gggtttcaccatattggtcaggctggtctggaactccagaacttatgatccgcccgcctcagcctcccaaagtgcttggattacctgcgtgagccactgtgttgggcgagactggataattgataaaggaaataggtttaagtgagtcacagtttcacatagttgaggaggcttcaggaaacttataatcacggcagaagggaaatgggaagcaaggatcttctttacatgacagcaggagaaagaagtatgagcaaaagaggaa-cttgccaaacacttagaaaaccatcagatctcatgagaactcactcactatcaccagaacaacatgggggaagcca-cc-----ccacgatccaaccacctcccaccaggtttctcccACAAAGTCAAAGGAATTAAGATAATCATTTAAAATCTAGGAGGAACAAACAATCCACCTGATTTCAAGACTATTGTATTACACTGGTGTATTCTCGTACTATTGTATTATTGTATTATTActacagtaattaagactgta
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28182304 518 -  71996105 gggtttcatcatattggtcaggctggtctggaactcctgaacttatgatccgcccacctcagcctcccaaagtgcttggattacctgcatgagccactgtgttgggcgagactgggtaattgataaaggaaataggtttaagtgagtcacagtttcacgtagttgaggaggcttcaggaaacttataatcacggcagaagggaaatgggaagcaaggatcttctttacatgacaataggagaaagaagtatgagcaaaagaggaa-cttgccaaacacttagaaaaccatcagatctcatgagaactcactcactatcaccagaacaacatgggggaagccaccc-----ccacgatccaaccacctcccaccaggtttctcccacaaagtcaaaggaattaggataatcatttaaaatctaggaggaacaaacaatccaCCTGATTTCAAGACTATTGTATTACATTGGTGTATTCTCGTACTATTGTAttattgtattactactacagtaattaagactgta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1838129 517 +   2316924 gggtttcaccatattggtcaggctggtctggaactccagaacttatgatccgcccgcctcagcctcccaaagtgcttggattacctgcgtgagccactgtgttgggcgagactgggtaattgataaaggaaataggtttaagtgagtcacagtttcacatagttgaggaggcttcaggaaacttacaatcacggcagaagggaaatgggaagcaaggatcttctttacatgacagcaggagaaagaagtatgagcaaaagaggaa-cttgccaaacacttagaaaaccatcagatctcatgagaactcactcactatcaccagaacaacatgggggaagcca-ct-----ccacgatccaaccacctcccaccaggtttctcccACAAAGTCAAAGGAATTAAGATAATCATTTAAAATCTAGGAGGAACAAACAATCCACCTGATTTCAAGACTATTGTATTACACTGGTGTATTCTCGTACTATTGTATTATTGtattattactacagtaattaagactgta
i manLeu1.NW_012104165v1   I 11850 C 0
s colAng1.NW_012115566v1     1716816 518 -   3067355 gggtttcaccatattggtcaggctggtctgtaactcctgaacttatgatccgcccacctcagcctcccaaagtgcttggattacccgcgtgagccactgtgttgggcaagactgggtaattgataaaggaaataggtttaagtgagtcacagtttcacatagttaaggaggcttcaggaaacttataatcatggcagaagggagatgggaagcaaggaccttctttacatgacagcaggagaaagaagtatgagcaaaagaggaa-cttgccaaacacttataaaactgtcagatctcatgagaactcactcactatcaccagaacaacacgggggaagccaccc-----ccacaatccaactacctcccaccaggtttctcccacaaagtcaaaggaattaggataatcatttaaaatctaggaggaacaaacaatccaCCTGATTTCAAGATTATTGTATTACATTGGTGTATTCTCTTACTATTGTATTATTGtattattactacagtaattaagactgta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171314013 510 - 171630274 gagattcaccatattggccgggcttgtctcagactcatggcctcatgatccatccgcctcagcctcccaaagtaatgggattacaggcatgagccaccatccccggcaagactgggtaacttataaaggaaataggtttaactgactcacagttccacaaggccgagaaggcctcaggaaactta-aatcatggcagaaggcaaaggggaagcaaggaccttctttacatgacagcaggagaaagaagtatgagcggaagaggaa-cttgccaaacacttataaaaccatcagatctcatgaaaactcactcaataccaccagaacagcacaagggaagccaatcaccaaccacgatccaatcacctcccgctaggtttctcccACTGagtcaaaggaattagaaaaattatttaaaatatagaggg----aatagtctatctaatttcaagactattgcattaccgtgttgtattc--------ttgcgctattctattgttactacagtaattaagatggta
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1       82362 511 -    285216 gggtttcaccatattggccaggctggtctcggactcctgacctcatgatctgcccgcctcagcctcccaaagtgctgggattacaggcataagccaccgtccccggcaagactgggtaacttataaaggaaataggtttaattgactcacagctccacaaggctgaggaggcctcaggaaactta-aatcatggcagaaggcaaaggagaagcaaggaccttctttacacgacagcaggagaaagaagtatgagcagaagaggaaccctgtcaaacacgtataaaaccatcagatctcgtgaaaactcattcgatatcaccagaacagcatgagggaagccaatcagcaatcacgatccaatcacctcccactaggtttctcccACTGagtcaaaggaattagaataattatttaaaatatagaggg----aatagtctatctgatttcaagactattgtattactgtgttgtattc--------ttgcgctattctattgttactacagtaattaagatggta
i aotNan1.NW_018494050v1   C 0 I 16
e saiBol1.JH378348            131015 2785 -    375362 I
e otoGar3.GL873742           1486015 7497 -   2232465 T
e cebCap1.NW_016108108v1      134712 2544 -    373274 I

a score=112746.000000
s hg38.chr6_GL000254v2_alt     20650 18 +   4827813 tagtattggcaaggagat
s panTro5.chr6              28997685 18 + 175400573 tagtattggcaaggagat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29241369 18 + 173848474 tagtattggcaaggagat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5032218 18 +   6154872 tagtattggcaaggagat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74034774 18 + 122973662 tagtattggcaaggagat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29177472 18 + 172585720 tagtattggcaaggagat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28867503 18 - 170955103 tagtattggcaaggagat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1836973 18 -   2996164 tagtattggcaaggagat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1735091 18 -   2157725 tagtattggcaaggagat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28182822 18 -  71996105 tagtattggcaaggagat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1838646 18 +   2316924 tagtattggcaaggagat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1717334 18 -   3067355 tagtattggcaaggagat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171314523 14 - 171630274 ----attactacagtaat
i calJac3.chr4             C 0 I 2
e saiBol1.JH378348            131015 2785 -    375362 I
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       82873 16 -    285216 I
e cebCap1.NW_016108108v1      134712 2544 -    373274 I

a score=864793.000000
s hg38.chr6_GL000254v2_alt     20668 123 +   4827813 aggcacgtgg-ttaatagag-agaatggaaaaataaacctacacaaatattctcaa-------------------------ctggtttttgacaaagttgcctaagtagtaattccatggaagaaaaataagtctcatgccttcacaaaa
s panTro5.chr6              28997703 123 + 175400573 aggcacgtgg-ttaatagag-aaaatggaaaaataaacctacacaaatattctcaa-------------------------ctggtttttgacaaagttgcctaagtagtaattccatggaagaaaaataagtctcatgccttcacaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29241387 123 + 173848474 aggcacgtgg-ttaatagag-aaaatggaaaaataaacctacacaaatattctcaa-------------------------ctggtttttgacaaagttgcctaagtagtaattccatggaagaaaaataagtctcatgccttcacaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5032236 123 +   6154872 aggcacgtgg-ttaatagag-agaatggaaaaataaacctacacaaatattctcaa-------------------------ctggtttttgacaaagttgcctaagtagtaattccatgaaagaaaaataagtctcatgccttcacaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74034792 146 + 122973662 aggcacatgg-ttaatagag---aatcgaaaaataaacccacacaaatattctcaaagaattaattaattaattaattaattaggtttttgacaaagttacctaagtagtaattccatgaaagaaaaataagtctcatgccttcacgaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29177490 124 + 172585720 aggcatgtggattaatagag-agaatggaaaaataaacctacacaaatatcatcag-------------------------ctggtttttgacaaagttgcataagtagtaattccatgaaagaaacataagtctcatgacttcacaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28867521 124 - 170955103 aggcatgtggattaatagag-agaatggaaaaataaacctacacaaatatcatcag-------------------------ctggtttttgacaaagttgcataagtagtaattccatgaaagaaacataagtctcatgacttcacaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1836991 124 -   2996164 aggcatgtggattaatagag-agaatggaaaaataaacctacacaaatatcatcag-------------------------ctggtttttgacaaagttgcataagtagtaattccatgaaagaaacataagtctcatgacttcacaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1735109 124 -   2157725 aggcatgtggattaatagag-agaatggaaaaataaacccacacaaatatcatcag-------------------------ctggtttttgacaaagttgcataagtagtaattccgagaaagaaaaataagtctcatgacttcacaaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28182840 124 -  71996105 aggcatgtggattaatagag-agaatggaaaaataaacccacacaaatatcatcag-------------------------ctgatttttgacaaagttgcataagtagtaattccatgaaagaaacgtaagtctcatgacttcacaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1838664 124 +   2316924 gggcatgtggattaacagag-agaatggaaaaataaactcacacaaatatcatcag-------------------------ctggtttttgacaaagttgcataagtagtaattccgagaaagaaaaataagtctcgtgacttcacaaaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1717352 124 -   3067355 aggcatgtggattaatacag-agaatggaaaaataaacacacacaaatattatcag-------------------------ctggtttttgacaaagttgcataagtagtaattccatgaaagaaaaataagtctcatgacttcacaaaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171314539 125 - 171630274 aggtacatggattaatagagcagaatgaaaaaataaatgcacacaaatattcttaa-------------------------ctggtttttgacaaagtcgcataaacggtaattccatgaaggaaaaataagtctcatgccttcacaaaa
i calJac3.chr4             I 2 I 309
s aotNan1.NW_018494050v1       82889 125 -    285216 aagcacgtgcattaatagagcagaatgaaaaaataaacccatacaaatattctcaa-------------------------ctggtttttgacagagttgcataagcagtaattccatgaaggaaaaataagtctcatgccctcacaaaa
i aotNan1.NW_018494050v1   I 16 C 0
e saiBol1.JH378348            131015 2785 -    375362 I
e otoGar3.GL873742           1486015 7497 -   2232465 T
e cebCap1.NW_016108108v1      134712 2544 -    373274 I

a score=34326.000000
s hg38.chr6_GL000254v2_alt     20791 5 +   4827813 gtgaa
s panTro5.chr6              28997826 5 + 175400573 gtgaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29241510 5 + 173848474 gtgaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5032359 5 +   6154872 gtgaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74034938 5 + 122973662 gtgaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29177614 5 + 172585720 gtgaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28867645 5 - 170955103 gtgaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1837115 5 -   2996164 gtgaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1735233 5 -   2157725 gtgaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28182964 5 -  71996105 gtgaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1838788 5 +   2316924 gtgaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1717476 5 -   3067355 gtgaa
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018494050v1       83014 5 -    285216 ttgaa
i aotNan1.NW_018494050v1   C 0 I 295
e saiBol1.JH378348            131015 2785 -    375362 I
e otoGar3.GL873742           1486015 7497 -   2232465 T
e cebCap1.NW_016108108v1      134712 2544 -    373274 I
e calJac3.chr4             171314664 309 - 171630274 I

a score=18612.000000
s hg38.chr6_GL000254v2_alt     20796 3 +   4827813 ctt
s panTro5.chr6              28997831 3 + 175400573 ctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29241515 3 + 173848474 ctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5032364 3 +   6154872 ctt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74034943 3 + 122973662 ctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29177619 3 + 172585720 ctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28867650 3 - 170955103 ctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1837120 3 -   2996164 ctt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1735238 3 -   2157725 ctt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28182969 3 -  71996105 ctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1838793 3 +   2316924 ctt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1717481 3 -   3067355 ctt
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            131015 2785 -    375362 I
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       83019 295 -    285216 I
e cebCap1.NW_016108108v1      134712 2544 -    373274 I
e calJac3.chr4             171314664 309 - 171630274 I

a score=1095317.000000
s hg38.chr6_GL000254v2_alt     20799 141 +   4827813 aaaatggatcgcagatatgaatataaaatgtaaaactataaaactttgaggaaaatatatggaagataatatttccaatctagggctagacaaataattttacagttgacagtgaaacatgatcca--------GAGATCTTGTAAAAG
s panTro5.chr6              28997834 141 + 175400573 aaaatggatcgcagatatgaatataaaatgtaaaactataaaactttgaggaaaatatatggaagataatatttccaatctagggctagacaaataattttacagttgacagtgaaacatgatcca--------GAGATCTTGTAAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29241518 141 + 173848474 aaaatggatcgcagatatgaatataaaatgtaaaactataaaactttgaggaaaatatatggaagataatatttccaatctaggcctagacaaataattttacagttgacagtgaaacatgatcca--------GAGATCTTGTAAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5032367 141 +   6154872 aaaatggatcgcagatatgaatataaaatgtaaaactataaaactttgaggaaaatatatggaagataatatttccaatctagggctagacaaataattttacagttgacagtgaaacatgatcca--------GAGATCTTGTAAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74034946 140 + 122973662 aaaatggatcgcagatatgaatataaaatgcaaaactataaaactttgaggaaaaaatatggaagataatatttccaatctagggctagacaaataattttacagttgacagtgaaacatgatcca--------GAGATCTTGT-AAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29177622 133 + 172585720 aaaatggatcgcagatatgaatgtaaaatgtaaaactataaaactctgaggaaaaaacatggaagataatctttccgatctagggctaaacaaataattttacagttgacagtgaaacat----------------gatcttgtaaaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28867653 133 - 170955103 aaaatggatcgcagatatgaatgtaaaatgtaaaactataaaactctgaggaaaaaacatggaagataatctttccgatctagggctaaacaaataattttacagttgacagtgaaacat----------------gatcttgtaaaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1837123 133 -   2996164 aaaatggatcgcagatatgaatgtaaaatgtaaaactataaaactctgaggaaaaaacatggaagataatctttccgatctagggctaaacaaataattttacagttgacagtgaaacat----------------gatcttgtaaaag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1735241 133 -   2157725 aaaatggatcgcagatatgaatgtaaaatgtaaaactataaaactttgaggaaaaaacatggaagataatctttccgatctagggctaaacaaataattttacagttgacagtgaaacat----------------gatcttgtaaaag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28182972 133 -  71996105 aaaatggatcacagatatgaatgtaaaatgtaaaactatgaaactctgaggaaaaaacatggaagataagctttccgatctagggctaaacaaataattttacagttgacagtgaaacat----------------gatcttgtaaaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1838796 133 +   2316924 aaaatggatcgcagatatgaatgtaaaatgtaaaactataaaactttgaggaaaaaacatggaagataatctttccgatctagggctaaacaaataattttacagttgacagtgaaacat----------------gatcttgtaaaag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1717484 133 -   3067355 aaaatggatcacagatatgaatgtaaaatgtaaaactataaaactctgaggaaaaaacatggaagataatctttccaatctagggctaaacaaataattttacagttgacagtgaaacat----------------gatcttataaaag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171314973 149 - 171630274 aaaatggatggcagatatgaatgtaaaatgtaaaactataaaactgtgaggaaaaaacatggaagataatcttttggatctagcactatgcagataattttacagttgacactgaaacgtgatccaCTGAAACGGAGATCCTGTACATG
i calJac3.chr4             I 309 C 0
s cebCap1.NW_016108108v1      137256 138 -    373274 aaaaaggatggcagatatgaatgtaaaatgtaaaactataaaactttgaggaaaaaaca---aagataatcttttggatctagcactaggcaaataatcttacagttgacactgaaacatgatcca--------GAGATCCTGTAAAAG
i cebCap1.NW_016108108v1   I 2544 C 0
s aotNan1.NW_018494050v1       83314 141 -    285216 aaaaaggatggcagctatgaatgtaaaatgtaaaactataaaactttgaggaaaaaacatggaagataatcttttggatctagcgctaggcaagtacttttacagttgccactgaaacgtggtcca--------GAGATCCCGTAGAAG
i aotNan1.NW_018494050v1   I 295 C 0
e saiBol1.JH378348            131015 2785 -    375362 I
e otoGar3.GL873742           1486015 7497 -   2232465 T

a score=1292747.000000
s hg38.chr6_GL000254v2_alt     20940 134 +   4827813 CTGGTTC-TTTTTTCCTCCTTTCCTCTCCTGCTATGTCAGTTGCTTTGGCTGGTAC----AGAGGCTGACC------AAATAGAAATAGAAATAAGAGAGCAGTAAAGGCAATGAATTGGGTCATGTTTTTACTTTTTATGTGAC
s panTro5.chr6              28997975 140 + 175400573 CTGGTTC-TTTTTTCCTCCTTTCCTCTCCTGCTATGTCAGTTGCTTTGGCTGGTAC----AGAGGCTGACCAAATAGAAATAGAAATAGAAATAAGAGAGCAGTAAAGGCAATGAATTAGGTCATGTTTTTACTTTTTATGTGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29241659 134 + 173848474 CTGGTTC-TTTTTTCCTCCTTTCCTCTCCTGCTATGTCAGTTGCTTTGGCTGGTAC----AGAGGCTGACC------AAATAGAAATAGAAATAAGAGAGCAGTAAAGGCAATGAATTGGGTCATGTTTTTACTTTTTATGTGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5032508 135 +   6154872 CTGGCTCTTTTTTTCCTCCTTTCCTCTCCTGCTATGTCAGTTGCTTTGGCTGGTAC----AGAGGCTGACC------AAATAGAAATAGAAATAAGAGAGCAGTAAAGGCAATGAATTGGGTCATGTTTTTACTTTTTATGTGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035086 134 + 122973662 CTGGTTC-TTTTTTCCTCCTTTCCTCTCCTGCTGTGTCAGTTGCTTTGGCTGGTAC----AGAGGCTGACC------AAATAGAAATAGAAATAAGAGAGCACTAAAGGCAATGAATTAGGTCATGTTTTTACTTTTTATGTGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29177755 138 + 172585720 CTGGTTC-TTTTTTCCTCCTTTCCTCTCCTGCTGTGTCAGTTGCTTTGGCTGGTACAAATAGAGGCTGACC------AAATAGAAACAGAAATAAGAGAGCACTAAAGGCAATGAATTGGGTCATGTTGTTACTTTTTATGTGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28867786 138 - 170955103 CTGGTTC-TTTTTTCCTCCTTTCCTCTCCTGCTATGTCAGTTGCTTTGGCTGGTACAAATAGAGGCTGACC------AAATAGAAACAGAAATAAGAGAGCACTAAAGGCAATGAATTGGGTCATGTTGTTACTTTTTATGTGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1837256 138 -   2996164 CTGGTTC-TTTTTTCCTCCTTTCCTCTCCTGCTGTGTCAGTTGCTTTGGCTGGTACAAATAGAGGCTGACC------AAATAGAAACAGAAATAAGAGAGCACTAAAGGCAATGAATTGGGTCATGTTGTTACTTTTTATGTGAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1735374 134 -   2157725 CTGGTTC-TTTTTTCCTCCTTTCCTCTCCTGCTGTGTCAGTCGCTTTGTCTGGTAC----AGAGGCTGACC------ATATAGAAATAGAAATGAGAGAGCACTAAAGGCAATGAATTGGGTCATATTTTTACTTTTTATGTGGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28183105 132 -  71996105 CTGGTTC-TTTTTTCCTCCTTTCCTCTCCTGCTGTGTCAGTTGCTTTGGCTGGT------AGAGGCTGACC------AAATAGAAACAGAAATAAGAGAGCACTAAAGGCAATGAATTGGGTCATGTTGTTACTTTTTATGTGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1838929 134 +   2316924 CTGGTTC-TTTTTTCCTCCTTTCCTCTCCTGCTGTGTCAGTCGCTTTGGCTGGTAC----AGAGGCTGACC------ATATAGAAATAGAAATGAGAGAGCACTAAAGGCAATGAATTGGGTCATATTTTTACTTTTTATGTGGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1717617 134 -   3067355 CTGGTTC-TTTTTTCCTCCTTTCCTCTCCTGCTGTGTCAGTTGCTTTGGCTGGTAC----AGAGGCTGACC------AAATAGAAACAGAAATAAGAGAGCACTAAAGGCAATGAATTGGGTCATGTTGTTACTTTTTATGTGAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315122 133 - 171630274 CTGGTTC-CTTTTTCTTCCTTTCCTCTCCTGCTGTGTCAGTTGCTTTAGCTGATAC----AGAGGCTGACC------AAACAGGAAT-GAAATAAGAGAGCACTGAAGGCAGCGAATTGGGTCATGGATTTACTTTTTATGTGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            133800 133 -    375362 ccggccC-CTTTTTCTTTCTTTCCTCTCCTGCTGTGTCAGTTGCGTTGGCTGATAC----AGAGCCTAACC------AAATCGAAAT-GAAATAAGAGAGCACTAAAGGGAGTGAATTGGGTCATGTTTTTACTTTTTATGTGAC
i saiBol1.JH378348         I 2785 C 0
s cebCap1.NW_016108108v1      137394 133 -    373274 CTGGTTC-CTTTCTCTTCCTTTCCTCTCCTACTGTGTCCGTTGCTTTGGCTGATAT----AGAGGCTGACC------AAATAGAAAT-GAAATAAGAGAGCACTAAAGGCAGTGAATTGGGTCGCGTTTTTACGTTTTAGCTGAC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       83455 133 -    285216 CTGGTTC-CTTTTTCTTCCTTCCCTCTCCTGCTGTGCCAGTTGCTTTGGCTCATAC----AGAGGTGGACC------AAATAGAAAT-GAAATAAGAGAGCACTAAAGGCAGTGAATTGGGTCATGTTTTTACTTTTTATGTGAC
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T

a score=64785.000000
s hg38.chr6_GL000254v2_alt     21074 8 +   4827813 aaagaaat
s panTro5.chr6              28998115 8 + 175400573 aaagaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29241793 8 + 173848474 AAAGAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5032643 8 +   6154872 AAAGAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035220 8 + 122973662 aaagaaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29177893 8 + 172585720 AAACAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28867924 8 - 170955103 AAACAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1837394 8 -   2996164 AAACAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1735508 8 -   2157725 AAACAAAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28183237 8 -  71996105 AAACAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1839063 8 +   2316924 AAACAAAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1717751 8 -   3067355 AAACAAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315255 8 - 171630274 AAAGAAAT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      137527 8 -    373274 aaagaaat
i cebCap1.NW_016108108v1   C 0 I 110
s aotNan1.NW_018494050v1       83588 8 -    285216 aaagaaat
i aotNan1.NW_018494050v1   C 0 I 9196
e saiBol1.JH378348            133933 0 -    375362 C
e otoGar3.GL873742           1486015 7497 -   2232465 T

a score=1624877.000000
s hg38.chr6_GL000254v2_alt     21082 301 +   4827813 gacagaattggtggccaggtgcagtggctcatgcctgtaatcccagcactttgggaggccaaggagggcagatcacctgaggtcaggaattcaagaccagcctggtcaacatggtgaaaccccacctctactaaaaattagctgggcatggtgacgcgcacctgaaatcccagctacttgggaggctgagtcaggagaatcacctgaacccaggaggcagaggctgcagtgagccaagatcacgccactgcgctccagcctgggtgatagagtgagacc--ctgtctcaaaaaa-----aaaagaaaa
s panTro5.chr6              28998123 306 + 175400573 gacagaattggtggccaggtgcagtggctcatgcctgtaatcccagcactttgggaggccaaggagggcagatcacctgaggtcaggaattcaagaccagcctggtcaacatggtgaaaccccacctctactaaaaattagctgggcatggtgatgcgcgcctgaaatcccagctatttgggaggctgagtcaggagaatcacctgaacccaggaggcagaggttgcagtgagccaagatcacgccactgcgctccagcctgggtgatagagtgagacc--ctgtctcaaaaaaaaaagaaaagaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29241801 292 + 173848474 GACAGAATTGGTggccaggtgcagtggctcatgcctgtaatcccagcactttgggaggccaaggagggcagatcacctgaggtcaggaattcaagaccagcctggtcaacatggtgaaaccccacctctactaaaaattagctgggcatggtgatgcgcgcctgaaatcccagctatttgggaggctgagtcaggagaatcacctgaatccaggaggcagaggttgcagtgagccaagatcacgccactgcgctccagcctgggtgatagagtgagacc--ctgtctcaaaaaa--------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5032651 274 +   6154872 GACAGAATTGGTggccaggtgcagtggctcatgcctgtaatcccagcactttgggaggccaaggagggcagatcacctgaggtcaggaattcaagaccagcctggtcaacacggtgaaaccccacctctactaaaaattagctgggcatggtgatgcg--cctgaaatcccagctacttgggaggctgagtcaggagaatcacctgaacccaggaggcagaggttgcagtgagccaagatcacgctactgcgctccagtctgggtgatagag------------------aaga--------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035228 304 + 122973662 gacagaattggtggccaggtgcagtggctcatacctgcattcccagcactttggaaggcctaggagggcagatcacctgaggtcaggaattcaagaccagcctggtcaacatggtgaaaccccacctctacttaaaattagctgggcatggtgatgcgcacctgaaatcccagctactcaggagactgagtcaggagaatcacttgaacccaggaggcagagattgcagtgagccaagatcatgccactgcactccagcctgggcaatagagtgagatc--ctgtctcaaaaaa--aagaaaagaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29177901 301 + 172585720 GACAGAATCAGTggtcaggcgcagtggctcatgcctgtaatcccagcactttgggaggccaaggagggcagatcaccggaggtcaggaagtcgagaccagcctggtcaacatggtgaaaccctgtttttactaaaaattagccgggcatggtgatgcacgcctgaaatcccagctactcaggaggctgaattaggagaatcacttgaacccaggaggcgcaggttgcagtgagccgagatcaggccactgcactccagtctgggtgatacagtgagacc--ctttctcaaaaaa-----aaaaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28867932 301 - 170955103 GACAGAATCAGTggtcaggcgcagtggctcatgcctgtaatcccagcactttgggaggccaaggagggcagatcaccggaggtcaggaagtcgagaccagcctggtcaacatggtgaaaccctgtctctactaaaaattagccgggcatggtgatgcacgcctgaaatcccagctactcaggaggctgaattaggagaatcacttgaacccaggaggcgcaggttgcagtgagccgagatcaggccactgcactccagtctgggtgatacagtgagacc--ctgtctcaaaaaa-----aaaaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1837402 303 -   2996164 GACAGAATCAGTggtcaggcgcagtggctcatgcctgtaatcccagcactttgggaggccaaggagggcagatcaccggaggtcaggaagtcgagaccagcctggtcaacatggtgaaaccctgcctctactaaaaattagccgggcatggtgatgcacgcctgaaatcccagctactcaggaggctgaattaggagaatcacttgaacccaggaggcgcaggttgcagtgagccgagatcaggccactgcactccagtctgggtgatacagtgagacccgctgtctccaaaaa-----aaaaaaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1735516 301 -   2157725 GACAGAATCGGTggtcaggcgcagtggctcatacctgtaatcccagcactttgggaggccaaggagggcagatcacccgaggtcaggaagtcgagaccagcctggtcaacatggtgaaaccccacctctactaaaaattaggtgggcatggtgatgcatgcctgaaatcccagctattcgggaggctgagttaggagaatcacttgaacccaggaggcgcagggtgcaatgagccaagatcacgccactgcactccagtctgggtgatacagtgagacc--ctgtctcaaaaaa-----aaaaaaaaa
i cerAty1.NW_012001495v1   C 0 I 20732
s chlSab2.chr17             28183245 301 -  71996105 GACAGAATCAGTggtcaggcgcagtggctcatgcctgtaatcccagcactttgggaggccaaggagggcagatcacccgaggtcaggaagtcgagaccagcctggtcaacatggtgaaaccctacctctactaaaaattagccgggcatggtgatgcacacatgaaatcccagctactcaggaggctgaattaggagaatcacttgaacccagggggcgcaggttgcagtgagttgagatcaggccacggcactccagtctgggtgatacagtgagacc--ctgtctcaaaaaa-----aaaaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1839071 301 +   2316924 GACAGAATCGGTggtcaggcgcagtggctcatacctgtaatcccagcactttgggaggccaaggagggcagatcacccgaggtcaggaagtcgagaccagcctggtcaacatggtgaaaccccacctctactaaaaattaggtgggcatggtgatgcatgcctgaaatcccagctattcgggaggctgagttaggagaatcacttgaacccaggaggcgcagggtgcaatgagccaagatcatgccactgcactccagtctgggtgatacagtgagacc--ctgtctcaaaaaa-----aaaaaaaaa
i manLeu1.NW_012104165v1   C 0 I 31966
s colAng1.NW_012115566v1     1717759 301 -   3067355 GACAGAATCAGTggtcaggcgcagtggctcatgcctgtaataccagcactttgggaggccaaggagggcagatcacccgaggttaggaagtcaagaccagcctggtcaacatggtgaaaccccatctctactaaaaattagctgggcatggtgatgcacgcctgaaatcccagctactcgggaggctgaattaggagaatcacttgaacccaggaggctcaggttgcagtgagccgagatcacgccactgcactccagtctgggtgatacagtgagacc--ctgtctcaaaaaa-----agaaaagaa
i colAng1.NW_012115566v1   C 0 I 2
e saiBol1.JH378348            133933   0 -    375362 C
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       83596 9196 -    285216 I
e cebCap1.NW_016108108v1      137535 110 -    373274 I
e calJac3.chr4             171315263   0 - 171630274 C

a score=9292.000000
s hg38.chr6_GL000254v2_alt     21383 5 +   4827813 gaaaa
s panTro5.chr6              28998429 5 + 175400573 gaaaa
i panTro5.chr6             C 0 C 0
s nomLeu3.chr1a             74035532 5 + 122973662 gaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178202 5 + 172585720 aaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28868233 5 - 170955103 aaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1837705 5 -   2996164 aaaaa
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28183546 5 -  71996105 gaaaa
i chlSab2.chr17            C 0 I 4814
s colAng1.NW_012115566v1     1718062 5 -   3067355 gagag
i colAng1.NW_012115566v1   I 2 C 0
e saiBol1.JH378348            133933 0 -    375362 C
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       83596 9196 -    285216 I
e cebCap1.NW_016108108v1      137535 110 -    373274 I
e calJac3.chr4             171315263 0 - 171630274 C
e manLeu1.NW_012104165v1     1839372 31966 +   2316924 I
e cerAty1.NW_012001495v1     1735817 20732 -   2157725 I
e gorGor5.CYUI01015250v1     5032925 0 +   6154872 C
e panPan2.chr6              29242093 0 + 173848474 C

a score=9284.000000
s hg38.chr6_GL000254v2_alt     21388 6 +   4827813 gaaaag
s panTro5.chr6              28998434 6 + 175400573 gaaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242093 4 + 173848474 --aaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5032925 4 +   6154872 --aaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035537 6 + 122973662 gcaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178207 6 + 172585720 aaaaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28868238 6 - 170955103 aaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1837710 6 -   2996164 aaacag
i macNem1.NW_012011356v1   C 0 C 0
s colAng1.NW_012115566v1     1718067 6 -   3067355 aaaagg
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            133933 0 -    375362 C
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       83596 9196 -    285216 I
e cebCap1.NW_016108108v1      137535 110 -    373274 I
e calJac3.chr4             171315263 0 - 171630274 C
e manLeu1.NW_012104165v1     1839372 31966 +   2316924 I
e chlSab2.chr17             28183551 4814 -  71996105 I
e cerAty1.NW_012001495v1     1735817 20732 -   2157725 I

a score=19197.000000
s hg38.chr6_GL000254v2_alt     21394 6 +   4827813 aaagaa
s panTro5.chr6              28998440 6 + 175400573 aaagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242097 4 + 173848474 aaag--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5032929 6 +   6154872 aaagaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035543 6 + 122973662 aaagaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178213 6 + 172585720 aaagaa
i rheMac8.chr4             C 0 I 3
s macFas5.chr4              28868244 6 - 170955103 aaagaa
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1     1837716 6 -   2996164 aaagaa
i macNem1.NW_012011356v1   C 0 I 466
s colAng1.NW_012115566v1     1718073 6 -   3067355 aaagaa
i colAng1.NW_012115566v1   C 0 I 1
s saiBol1.JH378348            133933 6 -    375362 AAAGAA
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       83596 9196 -    285216 I
e cebCap1.NW_016108108v1      137535 110 -    373274 I
e calJac3.chr4             171315263 0 - 171630274 C
e manLeu1.NW_012104165v1     1839372 31966 +   2316924 I
e chlSab2.chr17             28183551 4814 -  71996105 I
e cerAty1.NW_012001495v1     1735817 20732 -   2157725 I

a score=32920.000000
s hg38.chr6_GL000254v2_alt     21400 31 +   4827813 atgagagaaaaggaaagaaaaggagaaagag
s panTro5.chr6              28998446 31 + 175400573 atgagagaaaaggaaagaaaaggagaaagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242101 23 + 173848474 --------aaaananananananaNANANAN
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5032935 31 +   6154872 atgagagaaaaggaaagaaaaggagaaagag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035549 26 + 122973662 atgagagaaaagga-----aaggagaaagat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178222 31 + 172585720 aagaaagaaaagaaaagaaaaaaaagaaatg
i rheMac8.chr4             I 3 C 0
s macFas5.chr4              28868253 31 - 170955103 aagaaagaaaagaaaagaaaaaaaagaaatg
i macFas5.chr4             I 3 C 0
s colAng1.NW_012115566v1     1718080 27 -   3067355 aagagagagaaagaaagaaagaaagag----
i colAng1.NW_012115566v1   I 1 C 0
s saiBol1.JH378348            133939 27 -    375362 ATAagagaaaaggaaaaggagacagag----
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       83596 9196 -    285216 I
e cebCap1.NW_016108108v1      137535 110 -    373274 I
e calJac3.chr4             171315263  0 - 171630274 C
e manLeu1.NW_012104165v1     1839372 31966 +   2316924 I
e chlSab2.chr17             28183551 4814 -  71996105 I
e cerAty1.NW_012001495v1     1735817 20732 -   2157725 I
e macNem1.NW_012011356v1     1837722 466 -   2996164 I

a score=4095.000000
s hg38.chr6_GL000254v2_alt     21431 1 +   4827813 a
s panTro5.chr6              28998477 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242124 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5032966 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035575 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178253 1 + 172585720 a
i rheMac8.chr4             C 0 I 8
s macFas5.chr4              28868284 1 - 170955103 a
i macFas5.chr4             C 0 I 8
s chlSab2.chr17             28188365 1 -  71996105 a
i chlSab2.chr17            I 4814 I 4
s colAng1.NW_012115566v1     1718107 1 -   3067355 a
i colAng1.NW_012115566v1   C 0 I 4
s saiBol1.JH378348            133966 1 -    375362 a
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       83596 9196 -    285216 I
e cebCap1.NW_016108108v1      137535 110 -    373274 I
e calJac3.chr4             171315263 0 - 171630274 C
e manLeu1.NW_012104165v1     1839372 31966 +   2316924 I
e cerAty1.NW_012001495v1     1735817 20732 -   2157725 I
e macNem1.NW_012011356v1     1837722 466 -   2996164 I

a score=36911.000000
s hg38.chr6_GL000254v2_alt     21432 16 +   4827813 gaaagaaagaaa-gaaa-
s panTro5.chr6              28998478 15 + 175400573 gaaagaaagaaa-gaa--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242125 15 + 173848474 NANANANAGANa-gaa--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5032967 16 +   6154872 gaaagaaagaaa-gaaa-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035576 15 + 122973662 gaaagaaaaaag-aaa--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178262 15 + 172585720 gaaagaaaggga-gag--
i rheMac8.chr4             I 8 C 0
s macFas5.chr4              28868293 15 - 170955103 gaaagaaaggga-gag--
i macFas5.chr4             I 8 C 0
s macNem1.NW_012011356v1     1838188 15 -   2996164 gaaagaaagaaa-gaa--
i macNem1.NW_012011356v1   I 466 C 0
s chlSab2.chr17             28188370 15 -  71996105 gaaagaaagaaa-gaa--
i chlSab2.chr17            I 4 C 0
s colAng1.NW_012115566v1     1718112 16 -   3067355 gaaagaaagaaaggaa--
i colAng1.NW_012115566v1   I 4 C 0
s saiBol1.JH378348            133967 16 -    375362 gagagagagaga-gga-a
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       83596 9196 -    285216 I
e cebCap1.NW_016108108v1      137535 110 -    373274 I
e calJac3.chr4             171315263  0 - 171630274 C
e manLeu1.NW_012104165v1     1839372 31966 +   2316924 I
e cerAty1.NW_012001495v1     1735817 20732 -   2157725 I

a score=281072.000000
s hg38.chr6_GL000254v2_alt     21448 118 +   4827813 aagaaagaaag----aaagaaagaaagaaagaaagaaagaaagaaagaaag-----aaaga-aaagaaagaaa-ggaaaaa--gagaaagaaagagaagggagggtagaatgataagaaaggaaagaaa----------------ta
s panTro5.chr6              28998493  85 + 175400573 -----------------------------------aaagaaagaaagaaag-----aaaga-aaagaaagaaa-ggaaaa----agaaagaaagagaagggagggtagaatgataagaaaggaaagaaa----------------ta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242140  80 + 173848474 -----------------------------------gaagaagaagaagaag-----aagaa-gaagaaagaag-----------aagaagaagaagaag---------------aagaagaagaagaagNNNNNNNNNNNNNNNNNN
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5032983 114 +   6154872 aagaaagaaagaaa-aaagaaagaaaga-------aagaaagaaaagaaag-----aaaga-aaggaaagaaa-ggaaaaa--gacaaagaaagagaagggagggtagaatgataagaaaggaaagaaa----------------ta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035591  90 + 122973662 -----------------------------------gaaaaagaaaagaaagaaagaaaaga-aaagaaagaaa-ggaaaa----agagagaaagagaagggagggtagaatgataagaaagggaagaaa----------------ta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178277 115 + 172585720 -atagaaagagagagaaagaaagagaa--------agtaaaagaaagaaag-----aaaga-aaagaaagaaa-ggaaaaacagagaaagaaagagaagggagagtagaatgttaagaaaggaaagaaa----------------ta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28868308 115 - 170955103 -atagaaagagagagaaagaaagagaa--------agtaaaagaaagaaag-----aaaga-aaagaaagaaa-ggaaaaacggagaaagaaagagaagggagagtagaatgttaagaaaggaaagaaa----------------ta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1838203 116 -   2996164 -agaaagaaagaaagaaagaaagaaag--------aaagaaagaaagaaag-----aaagagaaagaaagaaa-gGAAAAACGGagaaggaaagagaagggagagtagaatgttaagaaaggaaagaaa----------------ta
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28188385 114 -  71996105 -agaaagaaagaaagaaagaaagaaag--------aaagaaagaaagaaag-----aaag--aaagaaagaaa-gGAAAAACGGagaaagaaagagaagggagagtagaatgttaagaaaggaaagaaa----------------ta
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1718128 116 -   3067355 -agaaagaaagaaagaaagaaagaaag--------aaagaaagaaagaaag-----aaagaaaagaaaagaaa-ggaaaaatggagaaagaaagagaagggagagtagaatgttaagaaaggaaagaaa----------------ga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315263 108 - 171630274 --Aagagaaaaggaaaaggagacagaga-------gaaaaagagaggaaag-----aaggaaagagaaaaaga-agaaagagagagagagaaagagaAGGGCGAGTGTAGTGATAAGAAAGGA------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            133983  86 -    375362 -------------------------aga-------aaaagaaagaagaaag-----acagagagagagagagagagagagagagagagagagagagaAGGGTGAGTGTAGTGATAAGAAAAGA------------------------
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       83596 9196 -    285216 I
e cebCap1.NW_016108108v1      137535 110 -    373274 I
e manLeu1.NW_012104165v1     1839372 31966 +   2316924 I
e cerAty1.NW_012001495v1     1735817 20732 -   2157725 I

a score=39211.000000
s hg38.chr6_GL000254v2_alt     21566 7 +   4827813 aagaaaA
s panTro5.chr6              28998578 7 + 175400573 aagaaaA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242220 7 + 173848474 NNGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033097 7 +   6154872 cagaaaA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035681 7 + 122973662 aagaaaA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178392 7 + 172585720 aagaaGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28868423 7 - 170955103 aagaaGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1838319 7 -   2996164 aagaaGA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28188499 7 -  71996105 aagaaGA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1718244 7 -   3067355 aagaaaA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315371 7 - 171630274 AAGAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134069 7 -    375362 AAGAAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      137645 7 -    373274 aaGAAAA
i cebCap1.NW_016108108v1   I 110 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       83596 9196 -    285216 I
e manLeu1.NW_012104165v1     1839372 31966 +   2316924 I
e cerAty1.NW_012001495v1     1735817 20732 -   2157725 I

a score=82167.000000
s hg38.chr6_GL000254v2_alt     21573 12 +   4827813 TTGGCTCAAAAG
s panTro5.chr6              28998585 12 + 175400573 TTGGCTCAAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242227 12 + 173848474 TTGGCTCAAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033104 12 +   6154872 TTGGCTCAAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035688 12 + 122973662 TTGGCTCAAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178399 12 + 172585720 TTGGCTCGAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28868430 12 - 170955103 TTGGCTCGAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1838326 12 -   2996164 TTGGCTCGAAAG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28188506 12 -  71996105 TTGGCTCCAAAG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1718251 12 -   3067355 TTGGCTCGAAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315378 12 - 171630274 TGGTCTCGAAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134076 12 -    375362 TTGTCTCCAAAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      137652 12 -    373274 TGGTCTCGAAAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       92792 12 -    285216 TTGGCTCAAAAG
i aotNan1.NW_018494050v1   I 9196 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T
e manLeu1.NW_012104165v1     1839372 31966 +   2316924 I
e cerAty1.NW_012001495v1     1735817 20732 -   2157725 I

a score=412075.000000
s hg38.chr6_GL000254v2_alt     21585 49 +   4827813 AGTCTCCTGGCTGACAAGAACTCTGGTGAGTTCTTCTACAGGAAAAT--C--A
s panTro5.chr6              28998597 49 + 175400573 AGTCTCCTGCCTGACAAGAACTCTGGTGAGTTCTTCTACAGGAAAAT--C--A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242239 49 + 173848474 AGTCTCCTGCCTGACAAGAACTCTGGTGAGTTCTTCTACAGGAAAAT--C--A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033116 49 +   6154872 AGTCTCCCGGCTGACAAGAACTCTGGTGAGTTCTTCTACAGGAAAAT--C--A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035700 51 + 122973662 AGTCTCCTGGCTGACAAGAACTCGGGTGAGTTCTTCTACAGGAAAAT--CAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178411 49 + 172585720 AGTCTCCTGGCTCACAAGAACTCTGGTGAGTTGTTCTACAGGAAAAT--C--A
i rheMac8.chr4             C 0 I 2
s macFas5.chr4              28868442 49 - 170955103 AGTCTCCTGGCTCACAAGAACTCTGGTGAGTTCTTCTACAGGAAAAT--C--A
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1     1838338 49 -   2996164 AGTCTCCTGGCTCACAAGAACTCTGGTGAGTTCTTCTACAGGAAAAT--C--A
i macNem1.NW_012011356v1   C 0 I 2
s cerAty1.NW_012001495v1     1756549 49 -   2157725 AGTCTCCTGGCTCTAAAGAACCCCTGTGAGTTCTTCTACAGGAAAAT--C--A
i cerAty1.NW_012001495v1   I 20732 I 2
s chlSab2.chr17             28188518 49 -  71996105 AGTCTCCTGGCTCACAAGAACTCTGGTGAGTTCTTCTACAGGAAAAT--C--A
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012104165v1     1871338 49 +   2316924 AGTCTCCTGGCTCTAAAGAACCCCTGTGAGTTCTTCTACAGGAAAAT--C--A
i manLeu1.NW_012104165v1   I 31966 I 26
s colAng1.NW_012115566v1     1718263 49 -   3067355 AGTCTCCTGGCTCACAAGAACTCTGGTGAGTTCTTCTACAGGAAAAT--C--A
i colAng1.NW_012115566v1   C 0 I 2
s calJac3.chr4             171315390 47 - 171630274 CGTCTCCTGGCTCAAAGAAA--CTGGTGAGTCCTTCTGCAGGAAAAT--C--A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134088 45 -    375362 TGTCTCCTGGCTCAAAAAAAC-CTGGTGAGTCCTT---CAGGAAAAT--C--A
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      137664 49 -    373274 CGTCTCCTGGCTCAGAAAAA--CTGGTGAGTCCTTCTACAGGAAAATGGG--A
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       92804 51 -    285216 AGTCTCCTGGCTCAAAAGAACTCCTGTGAGTTCTTCTACAGGAAAATCAA--A
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T

a score=171530.000000
s hg38.chr6_GL000254v2_alt     21634 20 +   4827813 GTCTCTTGTGTGTGACTACC
s panTro5.chr6              28998646 20 + 175400573 GTCTCTTGTGTGTGACCACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242288 20 + 173848474 GTCTCTTGTGTGTGACCACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033165 20 +   6154872 GTCTCTTGTGTGTGACCACC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035751 20 + 122973662 GTCTCTCGTGTGTGACCACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178462 20 + 172585720 GTCTCTTGTGTGTGACCACC
i rheMac8.chr4             I 2 C 0
s macFas5.chr4              28868493 20 - 170955103 GTCTCTTGTGTGTGACCACC
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1     1838389 20 -   2996164 GTCTCTTGTGTGTGACCACC
i macNem1.NW_012011356v1   I 2 C 0
s cerAty1.NW_012001495v1     1756600 20 -   2157725 GGCTCTTGTGTGTGAGCTCC
i cerAty1.NW_012001495v1   I 2 C 0
s chlSab2.chr17             28188569 20 -  71996105 GTCTCTTGTGCGTGACCACC
i chlSab2.chr17            I 2 C 0
s colAng1.NW_012115566v1     1718314 20 -   3067355 GTCTCTTGTGTGTGACCACC
i colAng1.NW_012115566v1   I 2 C 0
s calJac3.chr4             171315437 20 - 171630274 GTCTCTTGTGTGTGACCACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134133 20 -    375362 GTGTCTTGTGTGTAACCACC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      137713 20 -    373274 GTGTCTTGTGTGTGACCACC
i cebCap1.NW_016108108v1   C 0 I 7
s aotNan1.NW_018494050v1       92855 20 -    285216 GGCACTTGTGTGTGACCTCC
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T
e manLeu1.NW_012104165v1     1871387 26 +   2316924 I

a score=16210.000000
s hg38.chr6_GL000254v2_alt     21654 5 +   4827813 AAAAT
s panTro5.chr6              28998666 5 + 175400573 AAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242308 5 + 173848474 AAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033185 5 +   6154872 AAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035771 5 + 122973662 AAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178482 5 + 172585720 AAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28868513 5 - 170955103 AAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1838409 5 -   2996164 AAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1756620 3 -   2157725 AGC--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28188589 5 -  71996105 AAAAG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1718334 5 -   3067355 AAAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315457 5 - 171630274 AAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134153 5 -    375362 AAAAT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1       92875 3 -    285216 --AGT
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T
e cebCap1.NW_016108108v1      137733 7 -    373274 I
e manLeu1.NW_012104165v1     1871387 26 +   2316924 I

a score=86364.000000
s hg38.chr6_GL000254v2_alt     21659 11 +   4827813 CATCTAAAATG
s panTro5.chr6              28998671 11 + 175400573 CATCTAAAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242313 11 + 173848474 CATCTAAAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033190 11 +   6154872 CATCTAAAATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035776 11 + 122973662 CATCTAAAATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178487 11 + 172585720 CACCTAAAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28868518 11 - 170955103 CACCTAAAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1838414 11 -   2996164 CACCTAAAATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1756623 11 -   2157725 CATCTAAAATA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28188594 11 -  71996105 CACCTGAAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1871413 11 +   2316924 CATCTAAAATA
i manLeu1.NW_012104165v1   I 26 C 0
s colAng1.NW_012115566v1     1718339 11 -   3067355 CACCTAAAATA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315462 11 - 171630274 CACCTAAACTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134158 11 -    375362 CACCTAAACTA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1       92878 11 -    285216 CACCTAAAACA
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T
e cebCap1.NW_016108108v1      137733  7 -    373274 I

a score=1320490.000000
s hg38.chr6_GL000254v2_alt     21670 148 +   4827813 TTGACGGTGTCAAAGAGATAATAAATGCATCCCCACCCCTGATGTAAGGCAAATACAAACCTCACTGGCTTTCCTAGGTGGTTTGAG--TTTTTG---ATTGAGAATAGGCAGGGAACCCCGGGAACAGCTCTTCCTCCTCAGCAGGCGCCT--G
s panTro5.chr6              28998682 148 + 175400573 TTGACGTTGTCAAAGAGATAATAAATGCATCCCCACCCCTGATGTAAGGCAAATGCAAACCTCACTGGCTTTCCTAGGTGGTTTGAG--TTTTTG---ATTGAGAATAGGCAGGGAACCCCAGGAACAACTCTTCCTCCTCAGCAGGCGCCT--G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242324 148 + 173848474 TTGACGTTGTCAAAGAGATAATAAATGCATCCCCACCCCTGATGTAAGGCAAATACAAACCTCACTGGCTTTCCTAGGTGGTTTGAG--TTTTTG---ATTGAGAATAGGCAGGGAACCCCGGGAACAACTCTTCCTCCTCAGCAGGCGCCT--G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033201 148 +   6154872 TTGACGGTGTCAAAGAGATAATAAATGCATCCCCACCCCTGATGTAAGGCAAATACAAACCTCACTGGCTTTCCTAGGTGGTTTGAG--TTTTTG---ATTGAGAATAGGCAGGGAACCCCGGGAACAACTCTTCCTCCTCAGCAGGCGCCT--G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035787 148 + 122973662 TTGACGGTGTCAAAGAGATAATAAATCCACCCCCACCGCTGATGTAAGGCAAATACAAACTTCACTGGCTTTCCTAGGTGGTTTGAG--TTTTTT---ATTGAGAATAGGCAGGGAACCCCGGGAACAACTCTTTCTCCTCAGCAGGTGCCT--G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178498 148 + 172585720 TTGACCGCGTCAAAGAGATAATAAATCCACCCCCACCCCTGATGTAAGGCAAATACAAACCTCACTGACTTTCCTAGGTGGTTTGAG--TTTTTG---ATTGAGAATAGGTAGGGAACTCCAGGAACAACTCTTCCTCCTCAGCAGGAGCCT--G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28868529 148 - 170955103 TTGACCGCGTCAAAGAGATAATAAATCCACCCCCACCCCTGATGTAAGGCAAATACAAACCTCACTGACTTTCCTAGGTGGTTTGAG--TTTTTG---ATTGAGAATAGGTAGGGAACTCCAGGAACAACTCTTCCTCCTCAGCAGGAGCCT--G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1838425 148 -   2996164 TTGACCGCATCAAAGAGATAATAAATCCACCCCCACCCCTGATGTAAGGCAAATACAAACCTCACTGACTTTCCTAGGTGGTTTGAG--TTTTTG---ATTGAGAATAGGTAGGGAACTCCAGGAACAACTCTTCCTCCTCAGCAGGAGCCT--G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1756634 149 -   2157725 TTGAAGGTCTCAAAGAGATAACAAATTCACTCTCACCCCTGATGTAAGGCAAATATAAACCTCACTGGCTTTCCTAGGTGGTCCGAGTTTTTTTT---ATTGAAAATAGGCAGGGAACCCC-GGAGCAACTCTTTCTCCTTAGCAAACATCT--G
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28188605 148 -  71996105 TTGACAGTGTCAAAGAGATAATAAATCCACCCCCACCCCTGATGTGAGGCAAATACAAACCTCACTGACTTTCCCAGGTGGTTTGAG--TTTTTG---ATTGAGAATAGGTAGGGAACCCCAGGAACAACTCTTTCTCCTCAGCAGGAGCCT--G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1871424 150 +   2316924 TTGAAGGTCTCAAAGAGATAACAAATTCACTCTCACCCCTGATGTAAGGCAAATATAAACCTCACTGGCTTTCCTAGGTGGTCCGAGTTTTTTTT---ATTGAAAATAGGCAGGGAACCCCGGGAGCAACTCTTTCTCCTTAGCAAACATCT--G
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1718350 148 -   3067355 TTGACCGCGTCAAAGAGATAATAAATCCACTCCCACCCCTGATGTAAGGCAAATACAAACATCACTGACTTTCCTAGGTGGTTTGAG--TTTTTG---ATTGAGAATAGGTAGGGAACCCCGGGAACAACTCTTCCTCCTCAGCAGGAGCCT--G
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315473 149 - 171630274 CTGACAGTCTCAAAGAGATAATAAATCCACCC-CATCCCTGATGTAAGGCAAATACAAACCTCACTGGGTTTGCTTGGTGGTTTGAG--TTTTTTTTAATTGAGAATAAGCAGGGAACCCCAGGAGCGACTCTTCCTCCTCAGCAGGTGCCT---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134169 147 -    375362 CTGACAGTCTCAAAGAGATAACAAATCCACCC-CATCTCTGATGTAAGGCAAATACAAACCTCACTGGGTTTCCTAGGTGGTTTGAG--TTTTTTT--ATTGAGAATAAGCAGGGAACCCCAGAAGCAACTCTTCCTCTTCAGCAGGTGCCT---
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      137740 148 -    373274 TTGACAGTCTCAAAGAGATAACAAATCCACCC-CATCCCTGATGTAAGGCAAATACAAACCTCACTGGGTTTCCTAGGTGGTTTAAG--TTTTTTT--ATTGAGAATAAGCAGGGAACCCTAGAAGCAACTCTTCCTCCTCAGCAGGTGCCTG--
i cebCap1.NW_016108108v1   I 7 I 40
s aotNan1.NW_018494050v1       92889 148 -    285216 CTGAAGGTCTCAAAGAGATAATGAAACAACCCTCTCCCCTGATGTAAGGCAAATATAAATCTTCCTGGCTTTCCTAGGTGGTTTGAG--CTTTTC---ACTGAGAATAGTCAGGGAACCCCAGGAGCAGCTCTTCCTCCTCAGCAGGTGCCT-G-
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T

a score=247884.000000
s hg38.chr6_GL000254v2_alt     21818 37 +   4827813 GCCCT-GGACCACCTTCTTAAACCTCTAGAAcagtgc-t
s panTro5.chr6              28998830 37 + 175400573 GCCCT-GGACCCACTTCTTAAACCTCTAGAAcagtgc-t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242472 37 + 173848474 GCCCT-GGACCCACTTCTTAAACCTCTAGAAcagtgc-t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033349 37 +   6154872 GCCCT-GGACCCCCTTCTTAAACCTCCAGAAcagtgc-t
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035935 37 + 122973662 GCCCT-GGACCCCCTTCTTAAACCTCTGGAACAGAGC-T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178646 37 + 172585720 GCCCT-GGACTCCCTTCTTAAACCTCTAAAAcagtgc-t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28868677 37 - 170955103 GCCCT-GGACTCCCTTCTTAAACCTCTAAAAcagtgc-t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1838573 37 -   2996164 GCCCT-GGACTCCCTTCTTAAACCTCTAAAAcagtgc-t
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1756783 38 -   2157725 GCCCTGGGACCTCCTTCTGAAACTTCTAGAGcagtgc-t
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28188753 37 -  71996105 GCCCT-GGACTCCCTTCTTAAACCTCTAAAAcagtgc-t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1871574 38 +   2316924 GCCCTGGGACCTCCTTCTGAAACTTCTAGAGcagtgc-t
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1718498 37 -   3067355 GCCCT-AGACTCCCTTCTTAAACCTCTAAAAcagtgc-t
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315622 36 - 171630274 GGCCT-ATACATCCTTCTGAAACCTCTAGATcagtgc--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134316 36 -    375362 GCCCT-TCACATGCTTCTAAAACCTCTAAATCACTgc--
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1       93037 38 -    285216 GCCCTGGGACCTCCTTCTGAAACCTCTAGATcagtgct-
i aotNan1.NW_018494050v1   C 0 T 9085
e otoGar3.GL873742           1486015 7497 -   2232465 T
e cebCap1.NW_016108108v1      137888 40 -    373274 I

a score=76986.000000
s hg38.chr6_GL000254v2_alt     21855 9 +   4827813 tctcaaact
s panTro5.chr6              28998867 9 + 175400573 tctcaaact
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242509 9 + 173848474 tctcaaact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033386 9 +   6154872 tctcaaact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035972 9 + 122973662 TCTCAAACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178683 9 + 172585720 tctcaaact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28868714 9 - 170955103 tctcaaact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1838610 9 -   2996164 tctcaaact
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1756821 9 -   2157725 tctcaaact
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28188790 9 -  71996105 tctcaaact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1871612 9 +   2316924 tctcaaact
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1718535 9 -   3067355 tctcaaact
i colAng1.NW_012115566v1   C 0 I 2
s calJac3.chr4             171315658 9 - 171630274 tctcaaact
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134352 9 -    375362 tctcaaact
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       93075 9085 -    285216 T
e cebCap1.NW_016108108v1      137888 40 -    373274 I

a score=23959.000000
s hg38.chr6_GL000254v2_alt     21864 4 +   4827813 ttag
s panTro5.chr6              28998876 4 + 175400573 ttag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242518 4 + 173848474 ttag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033395 4 +   6154872 ttag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035981 4 + 122973662 TTAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178692 4 + 172585720 ttag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28868723 4 - 170955103 ttag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1838619 4 -   2996164 ttag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1756830 4 -   2157725 ttag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28188799 4 -  71996105 ttag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1871621 4 +   2316924 ttag
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171315667 4 - 171630274 gcag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134361 4 -    375362 tcag
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       93075 9085 -    285216 T
e cebCap1.NW_016108108v1      137888 40 -    373274 I
e colAng1.NW_012115566v1     1718544 2 -   3067355 I

a score=17028.000000
s hg38.chr6_GL000254v2_alt     21868 5 +   4827813 catca
s panTro5.chr6              28998880 5 + 175400573 catca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242522 5 + 173848474 catca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033399 5 +   6154872 catca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035985 5 + 122973662 CATCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178696 5 + 172585720 catca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28868727 5 - 170955103 catca
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1756834 5 -   2157725 catca
i cerAty1.NW_012001495v1   C 0 C 0
s calJac3.chr4             171315671 5 - 171630274 catca
i calJac3.chr4             C 0 C 0
e saiBol1.JH378348            134365 0 -    375362 C
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       93075 9085 -    285216 T
e cebCap1.NW_016108108v1      137888 40 -    373274 I
e colAng1.NW_012115566v1     1718544 2 -   3067355 I
e manLeu1.NW_012104165v1     1871625 0 +   2316924 C
e chlSab2.chr17             28188803 0 -  71996105 C
e macNem1.NW_012011356v1     1838623 0 -   2996164 C

a score=261538.000000
s hg38.chr6_GL000254v2_alt     21873 298 +   4827813 gcggctgggcg-ggtggctcactccagtaatcccagcactttgggaggccgaggcgggcggatcacggggtcaagagttcgagacaagcctgaccaacatagtgaaaccccgtctcgactaaaaatacaaaaattagctgggcatagcggcgcgcgcctgtaatcccagctacttgggaggttggggcagaagaatcgcttgaacccgggaggcagagattgcagtgagccgaggttgcaccactgcattccagcctgggcgagagggcgagactccgtctcaa----------------------------aaaacaaaacaaaac
s panTro5.chr6              28998885 308 + 175400573 gcggctgggcg-ggtggctcacgccagtaatcccagcactttgggaggccgaggcgggcggatcacggggtcaagagttcgagacaagcctgaccaacatagtgaaaccccgtctcgactaaaaatacaaaacttagctgggcatagcggcgcgcgcctgtaatcccagctacttgggaggctggggcagaagaatcgcttgaacccgggaggcagagattgcagtgagccgaggttgcaccactgcattccagcctgggcgtgagggagagactccgtctcaaa------------------aaacaaaacaaaacaaaacaaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242527 308 + 173848474 gcggctgggcg-ggtggctcacgccagtaatcccagcactttgggaggccgaggcgggcggatcacggggtcaagagttcgagacaagcctgaccaacatagtgaaaccccgtctcgactaaaaatacaaaacttagctgggcatagcggcgcgcgcctgtaatcccagctacttgggaggctggggcagaagaatcgcttgaacccgggaggcagagattgcagtgagccgaggttgcaccactgcattccagcctgggcgtgagggagagactccgtctcaaa------------------aaacaaaacaaaacaaaacaaaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033404 304 +   6154872 gcggctgggcg-ggtggctcacgccagtaatcccagcactttgggaggccgaggcgggcggatcacggggtcaagagttcgagacaagcctgaccaacatagtgaaactccgtctcgactaaaaatacaaaaattagctaggcatagcggcgagtgcctgtaatcccagctacttgggaggctggggcagaagaatcgcttgaactcgggaggcggagattgcagtgagccgaggttgcacaactgcattccagcctgggcgagagggcaagactccgtctcaaa----------------------aaaacaaaacaaaacaaaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74035990 327 + 122973662 GCggctgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaagagttcgagacaagcctgaccaacatagtgaaaccccatctctactaaaaatacaaaaattagctgggcatagtggcgcgcgcctgtaatcccagctacttgggaggctggtgcaggagaatcgcttgaacccaggaggcggagattgcagtgagctgagattgcaccactgcattccagcctgggcgacagggcgagactccatctcaaaaaaaaaaaaaaaaaaacaaaaaaaaaaaaaacaaaacaaaac
i nomLeu3.chr1a            C 0 C 0
e saiBol1.JH378348            134365   0 -    375362 C
e otoGar3.GL873742           1486015 7497 -   2232465 T
e aotNan1.NW_018494050v1       93075 9085 -    285216 T
e cebCap1.NW_016108108v1      137888  40 -    373274 I
e calJac3.chr4             171315676   0 - 171630274 C
e colAng1.NW_012115566v1     1718544   2 -   3067355 I
e manLeu1.NW_012104165v1     1871625   0 +   2316924 C
e chlSab2.chr17             28188803   0 -  71996105 C
e cerAty1.NW_012001495v1     1756839   0 -   2157725 C
e macNem1.NW_012011356v1     1838623   0 -   2996164 C
e macFas5.chr4              28868732   0 - 170955103 C
e rheMac8.chr4              29178701   0 + 172585720 C

a score=13602.000000
s hg38.chr6_GL000254v2_alt     22171  8 +   4827813 aa------ctttaa
s panTro5.chr6              28999193  8 + 175400573 aa------ctttag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242835  8 + 173848474 aa------ctttag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033708  8 +   6154872 aa------ctttag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74036317 14 + 122973662 aaaaaaaCCTTTAg
i nomLeu3.chr1a            C 0 C 0
s cebCap1.NW_016108108v1      137928  8 -    373274 aa------cttcag
i cebCap1.NW_016108108v1   I 40 C 0
s aotNan1.NW_018494050v1       83990  8 -    285216 aa------cttcag
i aotNan1.NW_018494050v1   T 9085 C 0
s otoGar3.GL873742           1478518  8 -   2232465 aa------ccttag
i otoGar3.GL873742         T 7497 C 0
e saiBol1.JH378348            134365  0 -    375362 C
e calJac3.chr4             171315676  0 - 171630274 C
e colAng1.NW_012115566v1     1718544  2 -   3067355 I
e manLeu1.NW_012104165v1     1871625  0 +   2316924 C
e chlSab2.chr17             28188803  0 -  71996105 C
e cerAty1.NW_012001495v1     1756839  0 -   2157725 C
e macNem1.NW_012011356v1     1838623  0 -   2996164 C
e macFas5.chr4              28868732  0 - 170955103 C
e rheMac8.chr4              29178701  0 + 172585720 C

a score=31290.000000
s hg38.chr6_GL000254v2_alt     22179 5 +   4827813 catca
s panTro5.chr6              28999201 5 + 175400573 catca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242843 5 + 173848474 catca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033716 5 +   6154872 catca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74036331 5 + 122973662 tatca
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012011356v1     1838623 5 -   2996164 catca
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28188803 5 -  71996105 catca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1871625 5 +   2316924 catca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1718546 5 -   3067355 catca
i colAng1.NW_012115566v1   I 2 C 0
s saiBol1.JH378348            134365 5 -    375362 cgtca
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      137936 5 -    373274 catca
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       83998 5 -    285216 catca
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1478526 5 -   2232465 cataa
i otoGar3.GL873742         C 0 C 0
e calJac3.chr4             171315676 0 - 171630274 C
e cerAty1.NW_012001495v1     1756839 0 -   2157725 C
e macFas5.chr4              28868732 0 - 170955103 C
e rheMac8.chr4              29178701 0 + 172585720 C

a score=2079732.000000
s hg38.chr6_GL000254v2_alt     22184 215 +   4827813 gagtcacttgagggcttattcaaacacaggcggctggacgccaccctcagcaattctgactcaatagatctgaggttgggcctggaatttggcattcctCTTGTAGCACCCTGATCCCT-CACCCCTTATTCTCCTGTGCAGTGTCCAC--TGTGACTAACATGCCACTATTTGCTTAAAGTGCCTGGAGAGAACCAGTGGATAGAA---GG----------G---AAAA-----CAAG
s panTro5.chr6              28999206 215 + 175400573 gagtcacttgagggcttattcaaacacaggcggctggacgccaccctcagcaattctgattcaatagatctgaggttgggcctggaatttggcattcctCTTGTAGCACCCTGATCCCT-CACCCCTTACTCTCCTGTGCAGTGTCCAC--TGTGACTAACATGCCACTATTTGCTTAAAGTGCCTGGAGAGAACCAGTGGATAGAA---GG----------G---AAAA-----CAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29242848 215 + 173848474 gagtcacttgagggcttattcaaacacaggcggctggacgccaccctcagcaattctgattcaatagatctgaggttgggcctggaatttggcattcctCTTGTAGCACCCTGATCCCT-CACCCCTTACTCTCCTGTGCAGTGTCCAC--TGTGACTAACATGCCACTATTTGCTTAAAGTGCCTGGAGAGAACCAGTGGATAGAA---GG----------G---AAAA-----CAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033721 215 +   6154872 gagtcacttgagggcttattcaaacacaggcagctggacgccaccctcagcaattctgattcaatagatctgaggttgggcctggaatttggcattCATCTTGTAGCACCCTGATCCCT-CACCCCTTACTCTCCTGTGCAGTGTCCAC--TGTGACTAACATGCCACTATTTGCTTAAAGTGCCTGGAGAGAACCAGTGGATAGAA---GG----------G---AAAA-----CAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74036336 215 + 122973662 gagtcacttgagggcttactcaaacacaggtggctgggcccctccctccacaattctgattcaatagatctgaggttgggcctggaatttggcattccGCTTGTAGCACCCTGATCCCT-CACCCCTTACTCTCCTGTGCAGTGTCCAC--TGTGACTAACATGCCACTATTTGCTTAAAGTGCCTGGAGAGAACCAGTGGATAGAA---GG----------G---AAAA-----AAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178701 223 + 172585720 gagtcacttgagggcttattcaaacacaggtggctgggccccaccctcagcaattctgattcaatagatctgatgttgggcctggaatttgGCAATCTGCTTGTAGCACCCTAATCCCT-CACCCCTTACTCTCCTGTGCAGTGTCCAC--TGTGACTAACGTGCCACTATTTGCTTAAAGTGCCTGGAGAGAAACAGTGGATAGAA---AG-------GGAG---AAAAAAAAACAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28868732 223 - 170955103 gagtcacttgagggcttattcaaacacaggtggctgggccccaccctcagcaattctgattcaatagatctgatgttgggcctggaatttgGCAATCTGCTTGTAGCACCCTAATCCCT-CACCCCTTACTCTCCTGTGCAGTGTCCAC--TGTGACTAACGTGCCACTATTTGCTTAAAGTGCCTGGAGAGAAACAGTGGATAGAA---AG-------GGAG---AAAAAAAAACAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1838628 226 -   2996164 gagtcacttgagggcttattcaaacacaggtggctgggccccaccctcagcaattctgattcaatagatctgatgttgggcctggaatttgGCAATCTGCTTGTAGCACCCTAATCCCT-CACCCCTTACTCTCCTGTGCAGTGTCCAC--TGTGACTAACATGCCACTATTTGCTTAAAGTGCCTGGAGAGAAACAGTGgatagaa---ag-------ggagaaaaaaaaaaaacaag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1756839 215 -   2157725 gagtcacttgagggcttatcc-aacacgggcagctgggccccactcttatcaattctgattctgtagatctgaggttgggcctggaatttggcattccACTGGTAGCACCCTAATCCTT-CACCCCTTGCTCTCCTGTGCAGCATCCTT--TGTG-CAAACATGACACTGTTTCCTTAAAGTGCCTCGAGAGAACCAGTAGATAGCA---GG-------GGGG---GGAA------AAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28188808 226 -  71996105 gagtcacttgagggcttattcaaacacaggtggctgggccccaccctcagcaattctgattcaatagatctgaggttgggcctggaatttggcattCTGCTTGTAGCACCCTAATCCCT-CACCCCTTACTCTCCTGTGCAGTGTCTGC--TGTGACCAACGTGCCACTATTTGCTTAAAGTGCCTGGGGAGAAATAGTGGATAGAA---GGTGGGGGAGGGG---AAAA----ACAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1871630 214 +   2316924 gagtcacttgagggcttatcc-aacacgggcagctgggccccactcttatcaattctgattctgtagatctgaggttgggcctggaatttggcattccACTGGTAGCACCCTAATCCTT-CACCCCTTGCTCTCCTGTGCAGCATCCTT--TGTG-CAAACATGACACTGTTTCCTTAAAGTGCCTCGAGAGAACCAGTAGATAGCA---GG-------GGGG---AAA-------AAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1718551 221 -   3067355 gagtcacttgagggcttattcaaacacaggtggctgggccccaccctcagcaattctgattcaatagatctgaggttgggcctggaatttggcattCTGCTTGTAGCACCCTAATCCCT-CACCCCTTACTCTCCTGTGCAGTGTCCAC--TGTGACTAACGTGCCACTATTTGCTTAAAGTGCCTGGAGAGAAACAGTGGATAGAA---GG-------GGGG---AAAA--AAACAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315676 206 - 171630274 gagtcacttgagggcttattcaaacacaggtggctgggccccaccctctgcaattctgactccatagatctgcggtggggcctggaatttggcattcccaTGGTAGCACCCTAATCCCT-CACCCCTTGCTC------------TCCAC--TGTGACTAACATGCCATTATGTGCTTAAAGTCTCTAGAGAGGACCAGTGGGTAGAA--GGG-------GGAG---AAAT------AAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134370 220 -    375362 gagtcacttgagggcttattcaaacacaggtggctgggccccattctcagcaattctgattcgatacatctgctgtggggcctggaatttggcattccGCTGGTAACACCCTCATCCCT-CGCCCCTTACTCTCCTGTGCAGTATCCAC--TGTGACTAACATGCCACTATTTGCTTAAAGTGTCTGGAGAGGACCAGTGCATAGAAGGGGG-------GGGG---GGGG------AGG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      137941 217 -    373274 gagacacttgagggcttattcaaacacaggtggctgggccccacccttagcaattctgattcaatacatctgcggtggggcctggaatttggcattccGCTGATAACACCCTCATCCCT-CACCCCTTGCTCTCCTGTGCATTGTCCAC--TGTGATTAACATACCACTATTTGCTTAAAGTGTCTGGAGAGGACCAGTGGATAGAA---GG-------GGCG---AAAA------AAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       84003 215 -    285216 gagccacttgagggcttattcaaacacaggtggctgggccccaccctcagcaattctgattcaatagatctgaggtggggcctggaatttgGC--TCCGCTGGTAACGCCCTCATCCCT-CACCCCTTGCTGTCCTGTGCAGTGTCCACTGTGTGACTAACGTGCCACTATTTGCTTAAAATGTCTGGAGAGGACCAGTGGATAGAA------------GGAA---ACAC------ACG
i aotNan1.NW_018494050v1   C 0 I 33
s otoGar3.GL873742           1478531 214 -   2232465 gcatcacttgagggtgtattaaaatacaggtctctgggctctaccctcataggttctgattcagtagat-taaagttgggtctggaatttggcatttTGCTCACAGTACCCTAATCTCTCCATTCCTTACTTTCCTGTGCAGTGTCCAC--TCTGGCTAACATGCCACTGTTTGTTTAAAGTGCCTGAAGAGAACAAGTGGataatt---ta-------aaaa---tata---------
i otoGar3.GL873742         C 0 C 0

a score=237825.000000
s hg38.chr6_GL000254v2_alt     22399 41 +   4827813 --TATGAAACGAAAAGAAA---------ATGTCTGCATTACCTTCCTTC---AAA
s panTro5.chr6              28999421 41 + 175400573 --TATGAAACGAAAAGAAA---------ATGTCTGCATTACCTTCCTTC---AAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29243063 41 + 173848474 --TATGAAACGAAAAGAAA---------ATGTCTGCATTACCTTCCTTC---AAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033936 41 +   6154872 --TATGAAACGAAAAGAAA---------ATGTCTGCATTACCTTCCTTC---AAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74036551 41 + 122973662 --TATGAAACAAAAAGAAA---------ATGTCTGCATTACCTTCCTTC---AAA
i nomLeu3.chr1a            C 0 I 357
s rheMac8.chr4              29178924 41 + 172585720 --TATGAAACGAAAAGAAA---------ATGTCTGCATTGCCTTCCTTC---AAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28868955 44 - 170955103 --TATGAAACGAAAAGAAA---------ATGTCTGCATTGCCTTCCTTCaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1838854 42 -   2996164 --tatgaaacgaaaagaaa---------aTGTCTGCATTGCCTTCCTTC--aaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1757054 45 -   2157725 --CAAGAAATGAAAAGAAAATATATGGCATGTCTTCATTACCT--CTTC------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28189034 41 -  71996105 --TATGAAATGAAAAGAAA---------ATGTCTGCATTGCCTTCCTTC---aaa
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012104165v1     1871844 48 +   2316924 --CAAGAAATGAAAAGAAAATATATGGCATGTCTTCATTACCT--CTTC---AAA
i manLeu1.NW_012104165v1   C 0 T 32520
s colAng1.NW_012115566v1     1718772 41 -   3067355 --TATGAAATGAAAAGAAA---------ATGTCTGCATTGCCTTCCTTC---AAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315882 44 - 171630274 --TACGAAACGACAAGAAAATACGTGGCATGTCTGCCTTACCTTCC---------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134590 43 -    375362 --TATGAAACAACAAGAAAATACTTGGCACATCTG-CTTACCTTCC---------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      138158 44 -    373274 --TACGAAACGACAAGAAAATACATGGCACATCTGCATTGCCTTCC---------
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1478745 32 -   2232465 tatatGGA--------------------ATGCTTGCATTACTTTCCTCC---AAA
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       84218 33 -    285216 I

a score=-5420.000000
s hg38.chr6_GL000254v2_alt     22440 2 +   4827813 CA
s panTro5.chr6              28999462 1 + 175400573 C-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29243104 1 + 173848474 C-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033977 1 +   6154872 C-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29178965 1 + 172585720 -A
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              28868999 1 - 170955103 -a
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     1838896 1 -   2996164 -a
i macNem1.NW_012011356v1   C 0 I 1
s chlSab2.chr17             28189076 1 -  71996105 -a
i chlSab2.chr17            I 1 I 1
e saiBol1.JH378348            134633 0 -    375362 C
e otoGar3.GL873742           1478777 0 -   2232465 C
e aotNan1.NW_018494050v1       84218 33 -    285216 I
e cebCap1.NW_016108108v1      138202 0 -    373274 C
e calJac3.chr4             171315926 0 - 171630274 C
e colAng1.NW_012115566v1     1718813 0 -   3067355 C
e manLeu1.NW_012104165v1     1871892 32520 +   2316924 T
e cerAty1.NW_012001495v1     1757099 0 -   2157725 C
e nomLeu3.chr1a             74036592 357 + 122973662 I

a score=60317.000000
s hg38.chr6_GL000254v2_alt     22442 12 +   4827813 AAAAAAAAAAAT
s panTro5.chr6              28999463  9 + 175400573 ---AAAAAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29243105  9 + 173848474 ---AAAAAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033978  9 +   6154872 ---AAAAAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74036949 12 + 122973662 aataaaaaaaaT
i nomLeu3.chr1a            I 357 C 0
s rheMac8.chr4              29178967 12 + 172585720 AAAAAAAAAAAT
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              28869001 12 - 170955103 aaaaaaaaaaaT
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     1838898 12 -   2996164 aaaaaaaaaaaT
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012001495v1     1757099  7 -   2157725 -----AAAAAAT
i cerAty1.NW_012001495v1   C 0 T 21289
s chlSab2.chr17             28189078 11 -  71996105 aaaaaaaaaaa-
i chlSab2.chr17            I 1 C 0
s colAng1.NW_012115566v1     1718813 12 -   3067355 AAAAAAAAAAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315926 12 - 171630274 AGCAAAAACAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134633 12 -    375362 AGCAAAAACAAT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      138202 12 -    373274 AGCAAAAACAAT
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1478777  6 -   2232465 ------AAAAAT
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       84218 33 -    285216 I
e manLeu1.NW_012104165v1     1871892 32520 +   2316924 T

a score=10035.000000
s hg38.chr6_GL000254v2_alt     22454 1 +   4827813 G
s panTro5.chr6              28999472 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29243114 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033987 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74036961 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178979 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28869013 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1838910 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1735817 1 -   2157725 G
i cerAty1.NW_012001495v1   T 21289 C 0
s chlSab2.chr17             28189089 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1839372 1 +   2316924 G
i manLeu1.NW_012104165v1   T 32520 C 0
s colAng1.NW_012115566v1     1718825 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315938 1 - 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134645 1 -    375362 G
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      138214 1 -    373274 G
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1478783 1 -   2232465 G
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       84218 33 -    285216 I

a score=626006.000000
s hg38.chr6_GL000254v2_alt     22455 66 +   4827813 TATCTTATAACGAACATATGGTTTGTC-------------CCTGGGGCACACAACCAGTCTTCAGCTAAGCAGGTTTCA
s panTro5.chr6              28999473 64 + 175400573 TATCTTTTAACGAAC--ATGGTTTGTC-------------CCTGGGGCACACAACCAGTCTTCAGCTAAGCAGGTTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29243115 64 + 173848474 TATCTTATAACGAAC--ATGGTTTGTC-------------CCTGGGGCACACAACCAGTCTTCAGCTAAGCAGGTTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5033988 66 +   6154872 TATCTTATAACAAACATATGGTTTGTC-------------CCTGGGGCACACAACCAGTCTTCAGCTAAGCAGGTTTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74036962 66 + 122973662 TATCTTATAACAAACATGTGATTGGCC-------------ACTGGGGCACAGAGTCAGTCTTCAGCTAAGCAGGTTTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29178980 66 + 172585720 TATCTTATAACAAACATATGATTGGCC-------------CCTGGGGCACAGAGCCAGTCTTCAGCTAAGCAGGTTTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28869014 66 - 170955103 TATCTTATAACAAACATATGATTGGCC-------------CCTGGGGCACACAGCCAGTCTTCAGCTAAGCAGGTTTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1838911 66 -   2996164 TATCTTATAACAAACATATGATTGGCC-------------CCTGGGGCACACAGCCAGTCTTCAGCTAAGCAGGTTTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1735818 66 -   2157725 TATCTTATAACAAACATATGATTGGCC-------------CCTGGGGCACACAGCCAGTCTTCAGCTAAGCAGGTTTCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28189090 66 -  71996105 TATCTTATAACAAACATATGATTGGCC-------------CCTGGGGTACACAGCCAGTCTTCAGCTAAGCAGGTTTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1839373 66 +   2316924 TATCTTATAACAAACATATGATTGGCC-------------CCTGGGGCACACAGCCAGTCTTCAGGTAAGCAGGTTTCA
i manLeu1.NW_012104165v1   C 0 T 7354
s colAng1.NW_012115566v1     1718826 66 -   3067355 TATCTTATAACAAACATATGATTGGCC-------------CCTGGGGCACACAGCCAGTCTTCAGCTAAGCAGGTTTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315939 79 - 171630274 TATTTTATAACAAACATGTGATTGGCCGGCGGCGGGGGGAGGGGGAGCGCACAGGAAATCCTCAGCTAAGCAGGTTTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134646 66 -    375362 TATTTTGTAACAAACATATGCTTGGCC-------------TGGGGGGCGCACAGGCAATCCTCAGCTAAGCAGGTTTCA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      138215 66 -    373274 TATTTTATAACAAACGTATGATTGGCC-------------TGGGGGGCGCACAGGCAATCCTCAGCTAAGCAGATTTCA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       84251 66 -    285216 TATTTTATAACAAACATATGATCGGCC-------------TGGGGGGCGCACGGGAAATCCTCAGCTAAGCTGGTTTCA
i aotNan1.NW_018494050v1   I 33 C 0
s otoGar3.GL873742           1478784 65 -   2232465 CATCCTGAAACAAATTTATAATT-GCC-------------CTCAAGGCACACAGCCAATCCTCAGCTAATTGGATTTCA
i otoGar3.GL873742         C 0 C 0

a score=3706019.000000
s hg38.chr6_GL000254v2_alt     22521 394 +   4827813 CTAGACAATATCTCTCCTGTAGGCTGGTTATGGATATTTTCACTGAACAAAAGAATCGAGAAGTAAGGACAGCCTACCCTGAC--AG-AGTG-TTAGACtggtggactgatgacaaacatcgtactctgttgcctctcaaagacact--tttgat-tca-------------acggcaaacatatacacagaggacagcagttttgaaac-atgcagcattggaaacccctaaaaggtgtcatcagtagat-aggatttcctggagttccctcgtcatacaaagcagatgtgataggattgacaaagaaaaaagaA-----------TTTTTTTT----------------------TTTTAATT---AGAAGTGCCAACACACCTGCAATTTACTCACC-TTTACTTTGCATCTATTTTCCATTGTGGCAGAAAAGCTTTCTCTACTTTTTC
s panTro5.chr6              28999537 394 + 175400573 CTAGACAATATCTCTCCTGTAGGCTGATTATGGATATTTTCACTGAACAAAAGAATCAAGAAGTAAGGACAGCCTACCCTGAT--AG-AGTG-TTAGACTGGTGGACTGATGACAAACATCGTACTCTGTTGCCTCTCAAAGACACT--TTTGAT-TCA-------------ACGGCAAACATATACACAGAGGACAGCAGTTTTGAAAC-ATGcagcattggaaacccctaaaaggtgtcatcagtagat-aggatttcctggagttccctcgtcatacaaagcagatgtgataggattgacaaagaaaaaagaA-----------TTTTTTTT----------------------TTTAAATT---AGAAGTGCCAACACACCTGCAATTTACTCACC-TTTACTTTGCATCTATTTTCCATTGTGGCAGAAAAGCTTTCTCTTCTTTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29243179 393 + 173848474 CTAGACAATATCTGTCCTGTAGGCTGATTATGGATATTTTCACTGAACAAAAGAATCAAGAAGTAAGGACAGCCTACCCTGAT--AG-AGTG-TTAGACtggtggactgatgacaaacatcgtactctgttgcctctcaaagacact--tttgat-tca-------------acggcaaacatatacacagaggacagcagttttgaaac-atgc-gcattggaaacccctaaaaggtgtcatcagtagat-aggatttcctggagttccctcgtcatacaaagcagatgtgataggattgacaaagaaaaaagaA-----------TTTTTTTT----------------------TTTAAATT---AGAAGTGCCAACACACCTGCAATTTACTCACC-TTTACTTTGCATCTATTTTCCATTGTGGCAGAAAAGCTTTCTCTTCTTTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5034054 402 +   6154872 CTAGACAATATCTCTCCTGTAGGCTGGTTATGGATATTTTCACTGAACAAAAGAATCAAGAAGTAAGGACAGCCTACCCTGAT--AG-AGTG-TTAGACtggtggactgatgacaaacatcgtactctgttgcctctcaaagacact--tttgat-tca-------------acggcaaacatatacacagaggacagcagttttgaaac-atgcagcattggaaacccctaaaaggtgtcatcagtagat-aggatttcttggagttccctcgtcatacaaagcagatgtgataggattgacagagaaaGAAAAAAGA------ATTTTTTTTT----------------------TTTTAATTAGAAGAAGTGCCAACACACCTACAATTTACTCACC-TTTACTTTGCATCTATTTTCCATTGCGGCAGAAAAGCTTTCTCTACTTTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74037028 397 + 122973662 CTAGACAATATCCCTCCTGTATGCTGGTTATGGATATTTTCACTGAACAAAAGAATCAAGAAGTAAGGACAGCCTAGGCTGAT--AG-AGTA-TTAGACtggtggactgatgacaaatatcgtactctgttgcctctcaa--ccact--tttgat-tca-------------acagcaaacatatacacagaggagagcagttttgaaac-atgcagcattggaaacccctaaaaggtgtcatcagtagat-aggatttcctggagttccctcgtcatgcaaagcagaagtgataggattgacagagaaaGAAAAAAAA--------TTTTTTTT----------------------TTTTAATCAGAATAAGTGCCAACACACCTGTAATTTACTCACC-TTTACTTTGCATCTATTTTCCATTGTGGCAGAAAAGCTTTCTC-ACTTTTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29179046 422 + 172585720 CCAGACAATATCCCTCCTGTATGCTGGCTATGGCTATTTTCACTGAACAAAAGAATCGAGAAGTAAGGACAGACTAGCCTGAT--AG-AGTG-TTTGACtggtggactgatgacaaatgtcgtactctgttgcctctcaaagacact--tttgat-tca-------------acagcaaacgtatacacagaggacagcagttttgaaac-atgcagcattggaaacccctaaaaggtgtcatcagtagat-aggatttcctggaattccctggtcatacaaagcagatgcgataggattgacagagaaagaagTAAGA--------ttttttatttttatttttttattattattattttaatCAGAAGAAGCACCAGCACACCTGCAATTTGCTCACC-TTTACATTGCATCTATTTTCCGTTGTGGCAGAAAAGTTTTCTCTACTTTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28869080 422 - 170955103 CCAGACAATATCCCTCCTGTATGCTGGCTATGGCTATTTTCACTGAACAAAAGAATCGAGAAGTAAGGACAGACTAGCCTGAT--AG-AGTG-TTTGACtggtggactgatgacaaatgtcgtactctgttgcctctcaaagacact--tttgat-tca-------------acagcaaacgtatacacagaggacagcagttttgaaac-atgcagcattggaaacccctaaaaggtgtcatcagtagat-aggatttcctggaattccctggtcatacaaagcagatgcgataggattgacagagaaagaagTAAGA--------ttttttatttttatttttttattattattattttaatCAGAAGAAGCACCAGCACACCTGCAATTTGCTCACC-TTTACATTGCATCTATTTTCCGTTGTGGCAGAAAAGTTTTCTCTACTTTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1838977 435 -   2996164 CCAGACAATATCCCTCCTGTATGCTGGCTATGGCTATTTTCACTGAACAAAAGAATCGAGAAGTAAGGACAGACTAGCCTGAT--AG-AGTG-TTTGACTGGTGGACTGATGACAAATGTCGTACTCTGTTGCCTCTCAAAGACACT--TTTGAT-TCAACAGCAAACATATACAGCAAACATATACACAGAGGACAGCAGTTTtgaaac-atgcagcattggaaacccctaaaaggtgtcatcagtagat-aggatttcctggaattccctggtcatacaaagcagatgcgataggattgacagagaaagaagTAAGA--------ttttttatttttatttttttattattattattttaatCAGAAGAAGCACCAGCACACCTGCAATTTGCTCACC-TTTACATTGCATCTATTTTCCGTTGTGGCAGAAAAGTTTTCTCTACTTTTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1735884 403 -   2157725 TCAGACAATATCCCTCCTGTATGCTGGCTATGGCTATTTTCACTGAACAAAAGAATCGAGAAGTAAGGACAGACTAGCCTGAT--AG-AGTG-TTTGACtggtggactgatgacaaatgtcgtactctgttgcctctcaaagacact--tttgat-tca-------------acagcaaacatatacacagaggacaacagttttgaaac-atgcaacattggaaacccctaaaagatgtcatcagtagat-aggatttcctggagttccctggtcatataaagcagatgcaataggattgacagagaaagaagTAAGA--------TTTTTTTCCTT-------------------TTTTAATCAGAAGAAGCGCCAACCCACCTGCAATTTACTTACC-TTTACATTGCATCTATTTTCCGTTGTGGCAGAAAAGGTTTCTCTACTTTTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28189156 409 -  71996105 CCAGACAATATCCCTCCTGTATGCTGGCTATGGATATTTTCACTGAACAAAAGAATCAAGAAGTAAGGACAGACTAGCCTGAT--AG-AGTGTTTTGACtggtggactgatgacaaatgtcgtactctgttgcctctcaaagacact--tttgat-tca-------------acagcaaacatatacacagaggacagcagttttgaaac-atgcagcattggaaacccctaaaaggtgtcatcagtagat-aggatttcctggagttccctggtcatacaaagcagatgcgataggattgacagagaaagaagTAAGA--------ttttttttttttttttt-------------tttAAATCAGAAGAAGCGCCAGCACACCTGCAATTTACTCACC-TTTACATTACATCTATTTTCCGTTGTGGCAGAAAA-GCTTCTCTATTTTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1832085 404 +   2316924 TCAGACAATATCCCTCCTGTATGCTGGCTATGGCTATTTTCACTGAACAAAAGAATCGAGAAGTAAGGACAGACTAGCCTGAT--AG-AGTG-TTTAACtggtggactgatgacaaatgtcgtactctgttgcctctcaaagacact--tttgat-tca-------------acagcaaacatatacacagaggacaacagttttgaaac-atgcaacattggaaacccctaaaaggtgtcatcagtagat-aggatttcctggagttccctggtcatataaagcagatgcaataggattgacagagaaagaagTAAGA--------TTTTTTTTCCTTTTTT------------------AATCAGAAGAAGCGCCAACCCACCTGCAATTTACTCACC-TTTACATTGCATCTATTTTCCGTTGTGGCAGAAAAGGTTTCTCTACTTTTTC
i manLeu1.NW_012104165v1   T 7354 C 0
s colAng1.NW_012115566v1     1718892 404 -   3067355 CCAGACAATATCCCTCCTGTATGCTGGCTGTGGATATTTTCACTGAACAAAAGAATCAAGAAGTAAGGACAGACTAGCCTGAT--AG-AGTG-TTTGACTAGTGGACTGATGACAAATGTCGTACTCTGTTGCCTCTCAAAGACACT--TTTGAT-TCA-------------ACAGCAAACATATACACAGAGGACAGCAGTTTTGAAAC-ACGcagcattggaaacccctaaaaagtgtcatcagtagat-aggatttcctggagtcccctggtcatacaaagcagatgcgataggattgacagagaaagaagTAAGA--------TTTTTTTTTTTT------------------TTTTAATCAGAAGAAGCGCCAACACACCTGCAATTTACTCACC-TTTACATTGCATCTATTTTTCGTTGTGGCAGAAAAGCTTTCTCTACTTTTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171316018 395 - 171630274 CCAGACAATACCCCTCCTGGACGCTGGTTATGGATATTTTCACTGGACAAAAGAATCAAGAAGTAAGGACATCCCAGCCTGAT--AC-CGTG-TTAGACGGGAGGA-TGGTGACAGACATCACATTCTGCTGCCTCTCGCAGATGC---TTTGAT-CCA-------------ACAGCAAGAGTGCACGCAGAGGGCAGCCGTTTTGAAAC---ACAGCATTGGAAACCCCCAAAAGGTGCCGTCAGTGGAC-AGGATTTCCTGGAGTTCCCTGGTCGCACAAAGCAGATGTGATGGGATTGACAGAGAAAGAACAAATA--------ATTTTT------------------------TTTTAATCAGAAGAAATGCCAATACACCTGTAATTTACTCACCTTTTACTCTGCATCTGTTTTCCATCATGACAGAAAAGTTTGCTCTACTTTTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134712 384 -    375362 CCAGATAGTATCCCTCCTGGATACTGGTTATGGATATTTTCACTGGACTATAGAATCAAGAGGTGAGGACATCCCAGCCTGAT--AAGAGTG-TTA---------------GACAAACATCATACTCTGTTGCCTTTCAAAGACGC---TTTGAT-TTA-------------ACAGGAAGCATGCACACAGAGGGCAGCAGTTTtgaaac-atacagcactggaaatccccaaaaggtgccatcagtggac-aggcttttctggagttccctggtcatacgaagcagatgtgatgggattgacagagaaaGAACAAATA--------ATTTTT------------------------TTTAAATCGGAAGAAATGCCAATACACCTGCAATTTACTCACCTTTTACTCTGCATCTGTTTTTCATCTTGACGGAAAAGCTTTCTCTACTTTTTC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      138281 385 -    373274 CCAGACAATATCCCTCCTGGATGCTGGTTATGGGTGTTTTCACCGGACAATAGAATCAAGAGGTGAGGACATCCCAGCCTGAT--AG-AGTG-TTA---------------GACAAACATCATACCCTATTGCCTCTCAAAAATGC---TTTGAT-TCA-------------ACAGCAAGCATGCACACAGAGGGCAGCGGTTTtgaaac-atacagcaccgcaaacctccaaaaggtaccatcagtggac-aggattttctggagttccctggccatatgaaacagacgtgat-ggattgacagagaaagaagaAATA-----TATACATTT------------------------TTTTAATCAGAAGAAATGCCAATACACCTGCAATTTACTCACCTTTTACTTTGCATCTGTTTTCCATCATGACAGAAAAGCTTTCTCTACTTTTTC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       84317 395 -    285216 CCCGACAATATCCCTCTTGGATGCTGGTTATAGATATCTTCACTGGACAAAAGAATCAAGAGGTGAGGACATCCCAGCCTGAT--AG-AGTG-TTAGACGGGTGGA-TGGTGGCAGACATCACA--CTGTTGCCTCTCAAAGATGC---TTTGAT-TCA-------------ACAGCAAGCATGCACACAGAGGGCAGCAGTCTtgaaac-atacagcactggaaacccctaaaaggtgccatcagtggac-aggattttctggagttccctagtcatacaaagcaaatgtgatgggattgacagagaaaAAATAAATA--------ATTTTT------------------------TTTTAATCGGAAGAAATGCCAATACATCTGCAATTTACTCACCTTTTACTTTGCATCTGTTTTCCATCGTGACAGAAAAGCTTTCTCTACTTTTTC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1478849 406 -   2232465 TCAGTTATGATCTCTCCTGAATGCCTTTTGTGGATATTTTCACTAGACAAGGGAATCAAGAAATAAGGACAATCCAGCCTGATAAAG-AGTG-TTAGGCTGGAGGATTGCGAATAACCACTGTTTTGTGTTACCTCCGGAAGACATCAGTTTAATGGCA-------------AAAGCACGTATGTACATAGATAACAACAGTTTtgaaaccataaagcaatggaaatccttagaaatgctattcagtggatcagaaattcttagcactttcctgtcatacgaagcagatgtaatcagattgaatgagaaagaacagaggaaaTGTATGTTTGTTT----------------------GTTTTACGGAGGAAAGTGCCCTAACACCTGCTATTTACTCACCTTTTACTTTGCGGCCGTTTTCTACTGTGACAGAAAA----------CTTTTTC
i otoGar3.GL873742         C 0 I 52

a score=3230061.000000
s hg38.chr6_GL000254v2_alt     22915 364 +   4827813 ATATGGGGCCTCTGTTTGCTGTTAACAGAGGTTTCCAGGCAATGTTTTAT--GTTATG-------------------------TTATAttttattttattttgagacggaggttctctcttgctgcccaggttggagtgcaatggtgggatctcagcaaactgcaacctccgcctcccgggttcaaacgattctcctgactcagccttttgagtagctgggattacaggcgtgcgtcaccacgcccggcta-------attttgtatttttaatagagacggagtttctccatgttagtcaggctggtct--------cgaactcccgacctcaggtgatcgccccgcctcggccttccaaagtgctgggattacagacgtgagccaccgcgcccggACCTCAGTG
s panTro5.chr6              28999931 364 + 175400573 ATATGGGGCCTCTGTTTGCTGTTAACAGAGGTTTCCAGGCAATGTTTTAT--GTTATG-------------------------TTATATTTTATTTTAttttgagacggaggttctctcttgctgcccaggttggagtgcaatggtggtatctcagcaaacagcaacctccgcctcccgggttcaaaagattctcctgactcagccttttgagtagctgggattacaggcgtgcatcaccacgcccggcta-------attttgtatttttaatagagacggagtttctccatgttagtcaggctggtct--------cgaactcccgacctcaggtgatcgccccgcctcggccttccaaagtgctgggattacagacgtgagccaccgcgcccggACCCCAGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29243572 364 + 173848474 ATATGGGGCCTCTGTTTGCTGTTAACAGAGGTTTCCAGGCAATGTTTTAT--GTTATG-------------------------TTATAttttattttattttgagacggaggttctctcttgctgcccaggttggagtgcaatggtggtatctcagcaaacagcaacctccgcctcccgggttcaaacgattctcctgactcagccttttgagtagctgggattacaggcgtgcgtcaccacgcccggcta-------attttgtatttttaatagagacggagtttctccatgttagtcaggctggtct--------cgaactcccgacctcaggtgatcgccccgcctcggccttccaaagtgctgggattacagacgtgagccaccgcgcccggACCCCAGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5034456 364 +   6154872 ATATGGGGCCTCTGTTTGCTGTTAACAGAGGTTTCCAGGCAATGTTTTAT--GTTATG-------------------------TTATAttttattttattttgagacggaggttctctcttgctgcccaggttggagtgcaatggtgagatctcggcaaactgcaacctccgcctcccaggttcaaacgattctcctgactcagccttttgagtagctgggattacaggcgtgcgtcaccacgcccggcta-------attttgtatttttaatagagacggagtttctccatgttagtcaggctggtct--------cgaactcccgacctcaggtgatcgccccgcctcggccttccaaagtgctgggattacagacgtgagccaccgcgcccggACCCCAGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74037425 368 + 122973662 ATATGGGACCTCTGTTTGCTGTTAACAGAGGTTTCCAGGCAATGTTTTAT--Gttttgtttta--------------------ttttattttattttattttgagacggaggttctctcttgctgcccaggttggagtgcaatgacgagatctcggctcactgcaacctccgcctctcgggttcaaacgattctcttgactcagcctcttgagtagctgggattacaggcgggcgtcaccacgcctggcta-------attttgtatttttagtagagagggagtttctccatattagtcaggctggtct--------cgaactcccgacctcaggtgatcgccccacctcggccttccaaagtgctgggattataggagtgagccaccgcgcccggACCCCAAT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29179468 383 + 172585720 ATATAGGGCCTCTGTTTACTGTTGACAGAGGTTTCCAGGCAACCTTtttt--gttttgttttg-----ttttattttattttattttattttattttattttgagatggagattctctcctgttgcccaggttggagtgcaatggcaagatctcggctcactgcaacctccgcctcccgggttcaaacgattctcctgattcagcctcttgagtagctgggattacaggcatg-ctcaccacgccaggcta-------attttgtatttttagtagagacggagtttctccatgttaatcaggctggtct--------cgaactcccgacctcaggtgatggtcccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggACCCCAGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28869502 388 - 170955103 ATATAGGGCCTCTGTTTACTGTTGACAGAGGTTTCCAGGCAACCTTtttt--gttttgttttgttttattttattttattttattttattttattttattttgagatggagattctctcctgttgcccaggttggagtgcaatggcaagatctcggctcactgcaacctccgcctcccgggttcaaacgattctcctgattcagcctcttgagtagctgggattacaggcatg-ctcaccacgccaggcta-------attttgtatttttagtagagacggagtttctccatgttaatcaggctggtct--------cgaactcccgacctcaggtgatggtcccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggACCCCAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1839412 383 -   2996164 ATATAGGGCCTCTGTTTACTGTTGACAGAGGTTTCCAGGCAACCTTtttt--gttttgttttg-----ttttgttttgttttgttttattttattttattttgagatggagattctctcctgttgcccaggttggagtgcaatggcaagatctcggctcactgcaacctccgcctcccgggttcaaacgattctcctgattcagcctcttgagtagctgggattacaggcatg-ctcaccacgccaggcta-------attttgtatttttagtagagacggagtttctccatgttaatcaggctggtct--------cgaactcccgacctcaggtgatggtcccgccttggcctcccaaagtgttgggattacaggcgtgagccaccgcgcccggACCCCAATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1736287 396 -   2157725 ATATGGGGCCTCTGTCTACTGTTGACAGAGGTTTCCAGGCAACCTTCTAt--gttttgttttgttttgttttgttttgttttgttttgttttgttttgttttgagacggaggttctctcttgttgcccaggttggagtgcaatggagagatctcggctcactgcaacctccgcctcccgagttcaaacggttctcccgactcagcctcttgagtagctgggattacaggcatgcctcaccacgccaggctaattttgtattttgtatttttagtagagacggagtttctccatgttaatcaggctggtct--------cgaactcccgacctcaggtgatcgccccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcctggACCCCAATA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28189565 369 -  71996105 ATATGGGGCCTCTGTTTACTGTTGACAGAGGTTTCCAGGCAACCTTTTAT--Gttttgtttta--------------------ttttattttattttattttgagacggagattctctcctgttgcccaggttggagcgcaatggcgagatctcggctcacagcaacctccgcctcctgggttcaaacgattctcctgactcagcctcttgagtagctgggattacaggcatgcgtcaccacgccaggcta-------attttgtatttttagtagagacggagtttctccatgttaatcaggctggtct--------cgaactgccgacctcaggtgatcgtccggcctcggcctcccaaagtgctgggattacaggcatgagccaccgcgcccggACCCCAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1832489 361 +   2316924 ATATGGGGCCTCTGTCTACTGTTGACAGAGGTTTCCAGGCAACCttttat--gttttg-----------------------------------ttttgttttgaggcggaggttctctcttgttgcccaggttggagtgcaatggcgagatctcggctcactgcaacctccgcctcccgagttcaaacgattctcccgactcagcctcttgagtagctgggattacaggcatgcgtcaccacgccaggctaattttgtattttgtatttttagtagagacggagtttctccatgttaatcaggctggtct--------cgaactcccgacctcaggtgatcgccccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcctggACCCCAATA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1719296 377 -   3067355 ATATGGGGCCTCTGTTTACTGTTGACAGAGGTTTCTAGGCAACCTTTTAT--GTTTTGtttta---------------ttttatttcattctattttattttgagacggagattctctcctgttgcccaggttggagtgcaatggcgagatcttggctcactgcaacctccgcctccccggt-----cgattctcctgactcagcctcttgagtagctgggattacaggcacgcgtcactacgccaggcta-------attttgtatttttagtagagacggagtttctccatgttaatcaggctggtctcgaactcccgaactcccgacctcaggtgatcgctccgcctcgacctcccaaagtgctgggattacaggcgtgagccaccgcgcccggACCCCAATA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171316413 353 - 171630274 ATATGGGGCCTCTGTTTGCTCTTAACAGAGGTTTCCAGGAAATGttttat-------------------------------------tttttattttattttgagacagag-tttgctcttgttgcccaggctggagtgcaatggcaccatctcggctcaccgcaacctccacgtcccgggttccagcgattctcttgcctcagcctcccaagtagctgggactacaggcgcgcaccaccatgcccggcta-------attttgtgtttttagtagaaacggggtttcttcatttcggtcaggctggtct--------tgaactcccgacctcaggtgatccgctcccgtcagcctcccaaagtgctgagattacaggcgtgagccacggctcccggccCCCAGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            135096 358 -    375362 ATATGGGGCCTCTGTTTGCTGGTAACAGAGGTTTTCAGGCAATGtttttttaatttt--------------------------tttattttttttttattttgagacagag-tttgctcttgttgccgaggctggagtgcaatggcacgatcttggctcagc-caacctcctcctcccaggttcaagcgattctcctgcctcagcctcccgagtagctcggactacaggggcgcgccaccactcccggcta-------attttgtgtttttagtagaaacggggtttcttcattttggtcaggctggtct--------tgaactcccgacctcaggaga-----tcccctcagcctcccaaagtgctgggattacaggcgtgagccacggctcccggccCCCAGTG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      138666 353 -    373274 ATATAGGGCCTCTGTTTGCTGGTAACAGAGGTTTCCAGGCAATGttttat-------------------------------------tttttattttattttgagacagag-tttgctcttgttgcccaggctggagcacaatggcacgatcctggctcaccgcaacctccacctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggcacgcgccaccacgcccggcta-------attttgtgtttttagtagaaacggggtttcttcattttggtcaggctggtct--------tgaactcccgacctcaggtgatccgctcccctcagcctccccaagtgctgggattacaggcgtgagccacggctcccggccTCCAGTG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       84712 353 -    285216 ATATGGGGCCTCTGTTTGCTGTTAACAGAGGTTTCCAGGCAATGttttat-------------------------------------tttttattttattttgagacagag-tttgctcttgttgcccagactggagtgcaatggcacgatctcggctcaccgcaatctctacctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggtgcgcgccaccacagtcggcta-------attttgtgtttttagtagaaaccgagtttcttcattttagtcaggctggtct--------tgaactcccgacctcaggtgatccgctaccctcagcctcccaaagtgctgggattacaggcgtgagtcatggctcccggccCTCAGTG
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1479255  52 -   2232465 I

a score=854492.000000
s hg38.chr6_GL000254v2_alt     23279 83 +   4827813 TTTTATTTTAACGAGGAGAATGGAGTGACTGATGCAATACAGGAAAATGAATCAATCGTATGGACTATCAGTAGGGAATGTGT
s panTro5.chr6              29000295 83 + 175400573 TTTTATTTTAACGAGGAGAATGTAGTGACTGAGGCAATACAGGAAAATGAATCAATCGTATGGAATATCAGTAGGGAATGTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29243936 83 + 173848474 TTTTATTTTAACGAGGAGAATGTAGTGACTGAGGCAATACAGGAAAATGAATCAATCGTATGGAATATCAGTAGGGAATGTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5034820 83 +   6154872 TTTTATTTTAACGAGGAGAATGGAGTGACTGAGGCAATACAGGAAAATGAATAAATAGTATGGAATATCAGTAGGGAATGTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74037793 83 + 122973662 TTTTATTTTAACGAGGAAAATTGAGTGACTGAGGAAATACAGGAAAATGAATCAATCGTATGGAATATCAGTAGGGAATGTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29179851 83 + 172585720 CTTTATTTTAACGAGGAAAATGGAGTGATTGAGGAAATACAGGAAAATGAATCAATCGTATGGAATATCAGTGGGGAATGTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28869890 83 - 170955103 CTTTATTTTAACGAGGAAAATGGAGTGATTGAGGAAATACAGGAAAATGAATCAATCGTATGGAATATCAGTGGGGAATGTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1839795 83 -   2996164 CTTTATTTTAACGAGGAAAATGGAGTGATTGAGGAAATACAGGAAAATGAATCAATCGTATGGAATATCAGTGGGGAATGTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1736683 83 -   2157725 CTTTATTTTAACGAGGAAAATGGAGTGATTGAGGAAATACAGGGAAAAGAATCAATCGTATGGAATATCAGTGGGGAATGTGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28189934 83 -  71996105 CTTTGTTTTAACTAGGAAAATGGAGTGATTGAAGAAATACAGGAAAACGAATCAATCGTATGGAATATCAGTGGGGAATGTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1832850 83 +   2316924 CTTTATTTTAACGAGGAAAATGGAGTGATTGAGGAAATACAGGGAAAAGAATCAATCGTATGGAATATCAGTGGGGAATGTGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1719673 83 -   3067355 CTTTATTTTAACGAGGAAAATGGAGTGATTGAGGAAATACAGGAAAATGAATCAATCGTATGGAATATCAGTGGGGAATGTGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171316766 83 - 171630274 TTTTATTTTAACGAGGAAAATGGAGTGACTGAGGAAATACAGAAAAATGAATCAATCGTAGGGAGTATCAGTAGGGAGTGTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            135454 83 -    375362 TTTTGTTTTAACGAAGAAAATGGAGCGAGTGAGGAAATACAGAAAACTGAATCACTCGTCTGGAATATCAGTAGGGAGTGTGC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      139019 83 -    373274 TTTTATTTTAAGGAGGAAAATGGAGTGACTGAGGAAATACAGAAAAATGAACCAATTGTACGGAATATCAGTAGGGAGTGTGT
i cebCap1.NW_016108108v1   C 0 I 25
s aotNan1.NW_018494050v1       85065 83 -    285216 TTTTCTTTTAAAGAGGAAAATGGAGCGACTGAGGAAATACAGAAAAATGGATGGATCGTATGGAATATCAGCAGGGAGTGTGT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479307 69 -   2232465 TTTTATTTTAATGATGAAAATGAAGTGATTGAGGAAATA--------------AATCCTATAGAATATCAATTGATAATGTGC
i otoGar3.GL873742         I 52 C 0

a score=186786.000000
s hg38.chr6_GL000254v2_alt     23362 27 +   4827813 TGATCCTTATTGATTTCGC-------TCCTTCCG
s panTro5.chr6              29000378 27 + 175400573 TGATCCTTATTGATTTCGC-------TCCTTCCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29244019 27 + 173848474 TGATCCTTATTGATTTCGC-------TCCTTCCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5034903 27 +   6154872 TGATCCTTATTGATTTCGC-------TCCTTCCG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74037876 27 + 122973662 TGATTCGTATTGATTTCGC-------TCCTTCCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29179934 27 + 172585720 TGATCCGTATTGATTTCGC-------TCCTTCCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28869973 27 - 170955103 TGATCCGTATTGATTTCGC-------TCCTTCCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1839878 27 -   2996164 TGATCCGTATTGATTTCGC-------TCCTTCCG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1736766 27 -   2157725 TGATCCGTATTGATTTCGC-------TCCTTCCG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28190017 27 -  71996105 TGATCCGTATTGATTTCCC-------TCCTTCCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1832933 27 +   2316924 TGATCCGTATTGATTTCGC-------TCCTTCCG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1719756 27 -   3067355 TGATTCGTATTGATTTCGC-------TCCTTCCG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171316849 24 - 171630274 TGCTCTG---TGATTTCCT-------CACCTCCG
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            135537 24 -    375362 TGCTCTG---TGATTTCCT-------CACCTCCC
i saiBol1.JH378348         C 0 I 1
s aotNan1.NW_018494050v1       85148 22 -    285216 TGCTC-----TGATTTCCT-------CACCTCCC
i aotNan1.NW_018494050v1   C 0 I 1
s otoGar3.GL873742           1479376 34 -   2232465 TGATCTGTATTTATCTCCTCTTTTAATACTTTCG
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      139102 25 -    373274 I

a score=752341.000000
s hg38.chr6_GL000254v2_alt     23389 83 +   4827813 TGTT-GAAGACCTCTAATTCCCCGACAGTCTTCGTTCGGTTGTCCAGCG---TCCTGCCACTCTCATCTCAAGCGGCTGGAGAGCCA
s panTro5.chr6              29000405 83 + 175400573 TGTT-GAAGACCTCTAATTCCCCGACAGTCTTCGTTCGCTTGTCCAGCG---TCCTGCCACTCTCATCTCAAGCGGCTGGAGAGCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29244046 83 + 173848474 TGTT-GAAGACCTCTAATTCCCCGACAGTCTTCGTTCGGTTGTCCAGCG---TCCTGCCACTCTCATCTCAAGCGGCTGGAGAGCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5034930 77 +   6154872 TGTT-GAAGACCTCTAATTCCCCGACAGTCTTCGTTCGGTTGTCCAGCA---TCCTG------TCATCTCAAGCGGCTGGAGAGCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74037903 82 + 122973662 TGTT-GAAGACCT-TAATTCCCCAACAGTCTTCGTTCGGTTGTCCAGCG---TCCTGCCACTCTCATCTCAAGCGGCCGGAGAGCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29179961 83 + 172585720 TGTT-GAAGATCTCTAATTCCCCGACAGTCTTCGATCGGTTGTCCAGCG---TCCTGCCACTCTCATCTTAAGCGGCGGGAGAGCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28870000 83 - 170955103 TGTT-GAAGATCTCTAATTCCCCGACAGTCTTCGATCGGTTGTCCAGCG---TCCTGCCACTCTCATCTTAAGCGGCGGGAGAGCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1839905 83 -   2996164 TGTT-GAAGATCTCTAATTCCCCGACAGTCTTCGATCTGTTGTCCAGCG---TCCTGCCACTCTCTTCTTAAGCGGCGGGAGAGCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1736793 83 -   2157725 TATT-GAAGATCTCTAATTCCCCAGCAGTCTTAGATCGGTTGTCCAGCG---TCCTGCCACTCTCATCTTAAGCGGCGGGAGAGCCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28190044 83 -  71996105 TGTT-GAAGATCTCTAATTCCCCGACAGTCTTCGATCGGTTGTCCAGCG---TCCTGCCACTCTCATCTTAAGCGGCGAGAGAGCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1832960 83 +   2316924 TATT-GAAGATCTCTAATTCCCCAACAGTCTTAGATCGGTTGTCCAGCG---TCCTGCCACTCTCATCTTAAGCGGCGGGAGAGCCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1719783 83 -   3067355 TGTT-GAAGACCTCTAATTCCCCGACAGTCTTCGATCGGTTGTCCAGCG---TCCTGCCACGCTCATCCTAAGCGGCGGGAGAGCCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171316874 84 - 171630274 GGTG-GAAGGCCTCTAATTCCCCGACAGTCTTC-CTCGGTTGTCCAGCGTGGTCCTGCCACTC-CATCTCCAGCGGCTGGAGAGCCA
i calJac3.chr4             I 1 C 0
s saiBol1.JH378348            135562 84 -    375362 TGTG-GAAGGCCTCCAATTCCCCGGCGGTCTGC-CTCGGCTGCCCAGCGTGGTCCTGCCTCTC-CATCTCCAGCGGCTGGAAAGCCA
i saiBol1.JH378348         I 1 C 0
s cebCap1.NW_016108108v1      139127 84 -    373274 TGTG-GAAGGCCTCTAATTCCCCGGCGGTCTTC-CTCGGCTGTCCAGCGTGATCCTGCCCCTC-CATCTCCAGCGGCTGGAGAGCCA
i cebCap1.NW_016108108v1   I 25 C 0
s aotNan1.NW_018494050v1       85171 84 -    285216 TGTA-GAAGGCCTCTAATTCCCCGGCGGTCTTC-CCCGGCTGTCCAGCGTGGTCCTGCCGCTC-CATCTCCAGCGGCCGGACAGCCA
i aotNan1.NW_018494050v1   I 1 I 11
s otoGar3.GL873742           1479410 80 -   2232465 TATTGGAAGTCCTCCAGTTTCCCGAAAGATTTCGTTC--TTGTCCGGCC---TCCTGCCACT--CATCTAAAACGACTCGCGATCCA
i otoGar3.GL873742         C 0 C 0

a score=27836.000000
s hg38.chr6_GL000254v2_alt     23472  5 +   4827813 CA-------TTT
s panTro5.chr6              29000488  5 + 175400573 CA-------TTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29244129  5 + 173848474 CA-------TTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5035007  5 +   6154872 CA-------TTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74037985  5 + 122973662 CA-------TTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29180044 12 + 172585720 CAGCAGTCCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28870083 12 - 170955103 CAGCAGTCCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1839988 12 -   2996164 CAGCAGTCCTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1736876 12 -   2157725 CAGCAGTCCTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28190127 12 -  71996105 CAGCAGTCCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1833043 12 +   2316924 CAGCAGTCCTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1719866 12 -   3067355 CAGCAGTCCTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171316958 11 - 171630274 -CGCGGCCCCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            135646 11 -    375362 -CGCAGTCCCTG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      139211 11 -    373274 -CGCAGTCCCTG
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1479490 12 -   2232465 CAGCAGTCCTCC
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       85255 11 -    285216 I

a score=179731.000000
s hg38.chr6_GL000254v2_alt     23477 18 +   4827813 TCTCAGCTTTGGATCGCA
s panTro5.chr6              29000493 18 + 175400573 TCTCAGCTTTGGATCGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29244134 18 + 173848474 TCTCAGCTTTGGATCGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5035012 18 +   6154872 TCTCAGCTTTGTATCGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74037990 18 + 122973662 TCTCAGCTTTGGATCGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29180056 18 + 172585720 TCTCAGTATTGGATCGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28870095 18 - 170955103 TCTCAGTATTGGATCGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1840000 18 -   2996164 TCTCAGTATTGGATCGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1736888 18 -   2157725 TCTCAGTATTGGATCGCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28190139 18 -  71996105 TCTCAGTATTGGATCGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1833055 18 +   2316924 TCTCCGTATTGGATCGCG
i manLeu1.NW_012104165v1   C 0 I 10154
s colAng1.NW_012115566v1     1719878 18 -   3067355 TCTCAGTATTGGATCGCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171316969 18 - 171630274 TCTCAGTACTGGATCGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            135657 18 -    375362 TCTCTGTTCTGGATCGCA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      139222 18 -    373274 TCTCTGTTCTGGATCGCA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       85266 18 -    285216 TCTCAGTGCTGCATCGCA
i aotNan1.NW_018494050v1   I 11 C 0
s otoGar3.GL873742           1479502 18 -   2232465 TCTCAGTATTGGATCAAA
i otoGar3.GL873742         C 0 C 0

a score=1147681.000000
s hg38.chr6_GL000254v2_alt     23495 113 +   4827813 CTTGTGGCTGTGCTCTCTGCGCAGTTCGACAGGG-----------AGAGAAATCAGTGGACAGATGCTTTGACTCTG-GATTTGGCTCAG-AAAAC-AAAAACAACGACCAAAACGAAATGCCCGGG
s panTro5.chr6              29000511 114 + 175400573 CTTGTGGCTGTGCTCTCTGCGCAGGTCGACAGGG-----------AGAGAAATCGGTGGACAGATGCTTTGACTCTG-GATTTGGCTCAG-AAAACAAAAAACAACGACCAAAACGAAATGCCCGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29244152 113 + 173848474 CTTGTGGCTGTGCTCTCTGCGCAGGTCGACAGGG-----------AGAGAAATCGGTGGACAGATGCTTTGACTCTG-GATTTGGCTCAG-AAAAC-AAAAACAACGACCAAAACGAAATGCCCGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5035030 113 +   6154872 CTTGTGGCTGTGCTCTCTGCGCAGGTCGACAGGG-----------AGAGAAATCAGTGGACAGATGCTTTGACTCTG-GATTTGGCTCAG-AAAAC-AAAAACAACGACCAAAACGAAATGCCCGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74038008 113 + 122973662 CTTGTGGCTGTGTTCTCTGGGCGGGTCGACAGGG-----------AGAGAAATCAGTGGACAGATGCTTTGACTCTG-GATTTGGCTCAG-AAAAC-AAAAACAACGACCAAAACGAAATGCCCGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29180074 113 + 172585720 CTTGTGGCTGTGCTCTCTGCGCAGGTCGACAGGG-----------AGAGAAATCAGTGGACAGATGCTTTGACTCTG-GATTTGGCTCAA-AAAAC-AAAAACAACGACCAAAACAAAATGCCCGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28870113 113 - 170955103 CTTGTGGCTGTGCTCTCTGCGCAGGTCGACAGGG-----------AGAGAAATCAGTGGACAGATGCTTTGACTCTG-GATTTGGCTCAG-AAAAC-AAAAACAACGACCAAAACAAAATGCCCGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1840018 113 -   2996164 CTTGTGGCTGTGCTCTCTGCGCAGGTCGACAGGG-----------AGAGAAATCAGTGGACAGATGCTTTGACTCTG-GATTTGGCTCAG-AAAAC-AAAAACAACGACCAAAACAAAATGCCCGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1736906 113 -   2157725 CTTGTGGCTGTGCTCTCTGCGCAGGTCGACAGGG-----------AGAGAAATCAGTGGACAGATGCTTTGACTCTG-GATTTGGCTCAG-AAAAC-AAAAACAACGACCAAAACAAAATGCCCGGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28190157 114 -  71996105 CTTGTGGCTGTGCTCTCTGCGCAGGTCGACAGGG-----------AGAGAAATCAGTGGACAGATGCTTTGACTCTG-GATTTGGCTCAGAAAAAA-AAAAACAACGACCAAAACAAAATGCCCGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1843227 113 +   2316924 CTTGTGGCTGTGCTCTCTGCGCAGGTCGACAGGG-----------AGAGAAATCAGTGGACAGATGCTTTGACTCTG-GATTTGGCTCAG-AAAAC-AAAAACAACGACCAAAACAAAATGCCCGGG
i manLeu1.NW_012104165v1   I 10154 C 0
s colAng1.NW_012115566v1     1719896 113 -   3067355 CTTGTGGCTGTGCTCTCTGCGCAGGTCGACAGGG-----------AGAGAAATCAGTGGACAGATGCTTTGACTCTG-GATTTGGCTCAG-AAAAC-AAAAACAACGACCAAAACAAAATGCCCGGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171316987 112 - 171630274 CCTGTGGCTGCGCTCTCTGCGCAGGT-GGCCGGG-----------AGATAAATCCGGGCACAGATGCTTTGCCTCTG-GATTTGGTTCAG-AAAAC-AAAAATAATGACAGCAACAAAATGCCCGCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            135675 113 -    375362 CCTGTGGCTGCGCTCTCTGCGCAGGTCGGTGGGG-----------AGATACATCCGGGCGCAGATGCTTTGACTCTG-GATTTGGTTCGG-AAAAC-AAAAATATTGACAGCAACAAAATGCCCGCG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      139240 113 -    373274 CCTGTGGCTGCGCTCTCTGCGCAGGTCGACGGGG-----------AGATACATCCGGGCACAGATGCTTTGACTCTG-GATTTGGTTCGG-AAAAC-AAAAATAATGACAGCAACAAAATGCCCGCG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       85284 104 -    285216 CCTGTGG---------CTGCGCAGGTGGACGGGG-----------AGATACATCCGGGCACAGATGCTTTGACTCTG-GATTTGGTTCAC-ACAAC-AAAAATAACGACAGCGACAAAATGCCCGGG
i aotNan1.NW_018494050v1   C 0 I 29
s otoGar3.GL873742           1479520 122 -   2232465 CTTTGGGCTGCGCTCTCTGTTCAGGTCGACAAGGGAGAGACTGCTGGAGAAATCAGTGGACAAATGCTTTCGCTTTGTTCTTTGGCCCAG-AAAAC-AAAAAGAACGAAAGGAACG---TGTTAGCG
i otoGar3.GL873742         C 0 C 0

a score=-32254.000000
s hg38.chr6_GL000254v2_alt     23608 4 +   4827813 GG-GC--
s panTro5.chr6              29000625 5 + 175400573 GGTGG--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29244265 3 + 173848474 G--CG--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5035143 1 +   6154872 G------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74038121 1 + 122973662 G------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29180187 1 + 172585720 G------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28870226 1 - 170955103 G------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1840131 1 -   2996164 G------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1737019 1 -   2157725 G------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28190271 1 -  71996105 G------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1843340 1 +   2316924 G------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1720009 1 -   3067355 G------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171317099 2 - 171630274 ---GG--
i calJac3.chr4             C 0 I 2
s saiBol1.JH378348            135788 2 -    375362 ---GG--
i saiBol1.JH378348         C 0 I 2
s cebCap1.NW_016108108v1      139353 2 -    373274 ---GG--
i cebCap1.NW_016108108v1   C 0 I 23
s otoGar3.GL873742           1479642 4 -   2232465 ---GAGC
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       85388 29 -    285216 I

a score=123952.000000
s hg38.chr6_GL000254v2_alt     23612 32 +   4827813 GGGGGGGGGCTTTTCTGCCTTTCTTCTTCT-CA
s panTro5.chr6              29000630 32 + 175400573 GGGGGGGCGCTTTTCTGCCTTTCTTCTTCT-CA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29244268 32 + 173848474 GGGGGGGCGCTTTTCTGCCTTTCTTCTTCT-CA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5035144 28 +   6154872 ----GGGCGCTTTTCTGCCTTTCTTCTTCT-CA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74038122 26 + 122973662 ------GCGCTTTTCTGCCGTTCTTCTTCT-CA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29180188 28 + 172585720 -----GGTGCTTTTCTCCCCTTCTTCTTCTACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28870227 28 - 170955103 -----GGTGCTTTTCTCCCCTTCTTCTCCTACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1840132 28 -   2996164 -----GGTGCTTTTCTCCCCTTCTTCTTCTACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1737020 28 -   2157725 -----GGCGcttctctccccttcttcttctaca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28190272 28 -  71996105 -----GGCGCTTGTCTCCCCTTCTTCTTCTACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1843341 28 +   2316924 -----GGCGCTTCTCTCCCCTTCTTCTTCTACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1720010 28 -   3067355 -----GGCGCTTTTCTCCCCTTCTTCTTCTCCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171317103 21 - 171630274 --------GCTTTCCTCCCCTTCTGACTA----
i calJac3.chr4             I 2 C 0
s saiBol1.JH378348            135792 21 -    375362 --------GCTTTCCTCCCCTTCTGATTT----
i saiBol1.JH378348         I 2 C 0
s otoGar3.GL873742           1479646 21 -   2232465 --------GCTTTTAACCCCTTCTTCTTT----
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       85388 29 -    285216 I
e cebCap1.NW_016108108v1      139355 23 -    373274 I

a score=549525.000000
s hg38.chr6_GL000254v2_alt     23644 56 +   4827813 GCCTTTCCTTCTCTTTAATCATAGTACAAAACCGAAGCCAAAGTGAGCCGCCTGTT
s panTro5.chr6              29000662 56 + 175400573 GCCTTTCCTTCTCTTTAATCGTAGTACAAAACCGAAGCCAAAGTGAGCCGCCTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29244300 56 + 173848474 GCCTTTCCTTCTCTTTAATCGTAGTACAAAACCGAAGCCAAAGTGAGCCGCCTGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5035172 56 +   6154872 GCCTTTCCTTCTCTTTAATCATAGTACAAAACCGAAGCCAAAGTGAGCCGCCTGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74038148 56 + 122973662 GTTTTTCCTTCTCTTTAATCATAGTACAAAACCGAAGCCGAAGTGAGCCGCCTGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29180216 56 + 172585720 GTCTTTCCTTCTCTTTAATTATGGTACAAAACTGATGCCAAAGTGAGCCGCCTGtt
i rheMac8.chr4             C 0 I 23591
s macFas5.chr4              28870255 56 - 170955103 GTCTTTCCTTCTCTTTAATTATAGTACAAAACTGATGCCAAAGTGAGCCGCCTGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1840160 56 -   2996164 GTCTTTCCTTCTCTTTAATTATAGTACAAAACTGATGCCAAAGTGAGCCGCCTGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1737048 56 -   2157725 gtcttttcttctcttTAATCATAGTACAAAACCGATGCCAAAGTGAGCCGCCTGTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28190300 54 -  71996105 G--TTTCCTTCTCTTTAATCATGGTACAAAACTGATGCCAAAGTGAGCCGCCTGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1843369 56 +   2316924 GTCTTTCCTTCTCTTTAATCATAGTACAAAACCGATGCCAAAGTGAGCCGCCTGTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1720038 56 -   3067355 GTCTTTCCTTCTCTTTAATCATAGTACAAAACCGATGCCAAAGTGAGCCGCCTGTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171317124 56 - 171630274 GTCTTTCCCTCTCTTTAAGCACAGCACAAAACCGAAGCCCAAGTGAGCTGCCTGCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            135813 56 -    375362 GTCTTTCCTTCTCTTTTAGCATAGCAGAAAACCGAAGCCAAAGTGAGCCGCCTGTG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      139378 56 -    373274 GTCTTTCCTTCTCTTTAAGCACAGCACAAAACCGAAGCCAAAGTGAGCCGCCTGTG
i cebCap1.NW_016108108v1   I 23 C 0
s aotNan1.NW_018494050v1       85417 56 -    285216 GTCTTTCCTTCTCTTTAAGCACAGCACAAAACCGAAGCCAAAGTGAGCCGCCTGCG
i aotNan1.NW_018494050v1   I 29 C 0
s otoGar3.GL873742           1479667 39 -   2232465 GTCTTTCAGTCTCGTTAAT---------AAATGGGAGCCCAAGTGAAC--------
i otoGar3.GL873742         C 0 C 0

a score=1030872.000000
s hg38.chr6_GL000254v2_alt     23700 123 +   4827813 GATGTGCACGCTTTTGTTTGCTTTCAAGAGAC---CCTGTTGCGACCTCATTCTTCTTT-CTCC---------------TCTTCCTTCTGCCGTCGCAATCGCCTTAGGTGATGTTGAGGCTTACATTATAGAGAT-GGGAGA
s panTro5.chr6              29000718 123 + 175400573 GATGTGCACGCTTTTATTTGCTTTCAAGAGAC---CCTGTTGGGACCTCATTCTTCTTT-CTCC---------------TCTTCCTTCTGCCGTCGCAATCTCCTTAGGTGATGTTGAGGCTTACAGTATAGAGAT-GGCAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29244356 123 + 173848474 GATGTGCACGCTTTTATTTGCTTTCAAGAGAC---CCTGTTGGGACCTCATTCTTCTTT-CTCC---------------TCTTCCTTCTGCCGTCGCAATCTCCTTAGGTGATGTTGAGGCTTACAGTATAGAGAT-GGCAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5035228 124 +   6154872 GATGTGCACGCTTTTGTTTGCTTTCAAGAGAC---CCTGTTGGGACCTCATTCTTCTTT-CTCC---------------TCTTCCTTCTGCCGTCGCAATCGCCTTAGGTGATGTTGAGGCTTACAGTATAGAGATGGGCAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74038204 123 + 122973662 GATATGCACGCTTTTGTTTGCTTTCAAGAGAC---ACTGATGGGACCTCATTCTTCTTT-CTCC---------------TCTTCCTTCTGCCGTCGCAATCGCCTTAGGTGATGTCGAGGCTTACAGTATAGAGAT-GGGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29203863 135 + 172585720 GATGTGCAGTCTTTTGTTTGGGTTCAAGAGGC---CCTGTTGGAATCCCA---TTCTTT-CTTCCTCATTTCTTTTTCACCTTCCTTCGGCCGTGGCAGTCGCCTTCGGTGATGTCGAAGCTCACAGCATAGAGAT-TGGTTA
i rheMac8.chr4             I 23591 T 23453
s macFas5.chr4              28870311 126 - 170955103 GATGTGCACGCTTTTGTTTGCTTTCAAGAGGC---CCTCTTGGGACCTCATTCTTCTTT-CCCCCTCATTTCTTTCTTGCCTTCCTTCTACCGTCGCAATCGCCTTAGGTGATGTCGAGGCTTACAGCAT-------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1840216 138 -   2996164 GATGTGCACGCTTTTGTTTGCTTTCAAGAGGC---CCTCTTGGGACCTCATTCTTCTTT-CCCCCTCATTTCTTTCTCGCCTTGCTTCTACCGTCGCAATTGCCTTAGGTGATGTCGAGGCTTACAGCATAGTGAT-GGGACG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1737104 139 -   2157725 GATGTGCACGCTTTTGTTTGCTTTCAAGAGGC---CCTCTTGGGACCTCATTCTTCTTTCCCCCCTCATTTCTTTCTCGTTTTCCTTCTGCGGTCGCAATCGCCTTAGGTGATGTCGAGGCTTACAGCATAGCGAT-GGGACG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28190354 138 -  71996105 GATGTGCACGCTTTTGTTTGCTTTCAAGAGGC---CCTCTTGGGACCTCATTCTTCTTT-CCCCCTCATTTCTTTCTCGCCTTCCTTCTGCCGTCGCAATCGCCTTAGGTGATGTCGAGGCTTACAGCATAGCGAT-GGGACG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1843425 139 +   2316924 GATGTGCACGCTTTTGTTTGCTTTCAAGAGGC---CCTCTTGGGACCTCATTCTTCTTTCCCCCCTCATTTCTTTCTCGTTTTCCTTCTGCGGTCGCAATCGCCTTAGGTGATGTCGAGGCTTACAGCATAGCGAT-GGGACG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1720094 141 -   3067355 GATGTGCACGCTTTTGTTTGCTTTCAAGAGGCCCTCCTCTTGGGACCTCATTCTTCTTT-CCCCCTCATTTCTTTCTCGTCTTCCTTCTGCCGTCGCAATCGCCTTAGGTGATGTCGAGGCTTACAGCATAGCGAT-GGGACG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171317180 136 - 171630274 GACGTGCGCGCTTTTGTGTGGGTTCAGGGGAC---CCTGCTGGGATCTCATTCTTCTTT-CTCG-TCATTTCTTTTCC-TCTTCCTTCTGCCCTTGCAATCGCCTTAGGTGATGTGGAGGCTCACAGCATAGAGAT-GGGAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            135869 128 -    375362 GACGTGCACGCTTTTGTGTGTGTTCAAGAGAC---CCTGCTGGG--------CTTCTTT-CCCG-TCATTTCTTTTCC-TCTTCCTTCTGCCCTTGCAATCACCTTAGGTGATTTGGAGGCTCACAGCAGAGAGAT-GGGAGA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      139434 128 -    373274 TATGTGCACGCTTTTGTGTGGGTTCAAGAGAC---CCTGCTGGG--------CTTCTTT-CCCG-TCATTTCTCTTCC-TCTTCCTTCTGCCCTTGCAATCGCCTTAGGTGATGTGGAGGCTCACAGCAGAAAGAT-GGGAAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       85473 127 -    285216 GACGTGCACGCTTCTGTGTGGGTTCA-GAGAC---CCTGCTGCG--------CTTCTTT-CCCG-TCATTTCTTTTCC-TCTTCCTTCTGCCCTTGCAATCGCCTTAGGTGATGTGGAGGCTCACAGCAAAGAGAT-GGGAGA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479706 120 -   2232465 ---ATGCACGCTTTGGTTCCCACTCAGGAGAC---CCGGT------------CTCCTCC-CCCTCTCCTTCCCCCGC--TTTTCCTTACATC-TCTCGGTCACATTAGGTGATGTCAAGGGTCAAAACATAGAGAT-GAAAGA
i otoGar3.GL873742         C 0 C 0

a score=3051882.000000
s hg38.chr6_GL000254v2_alt     23823 316 +   4827813 TAAGTGAAGGCAATCCATTGGGTTACGTTTTTACTCTCTATACGTGCAGAAATAGGATAGAAAAAGGTGAGGAGGCAGAAGGCTATGTTGCTTGAGAATTACATTTAAGCACTGCCAGAGCAAAACCACC-ATTtggaggtgccggggatcgaacccggggcctcacacatgcaaagcatgtgctctaccactgagctacacccc--cCTCCTG-AAAGACTGTTTTGTAATAATTTTCAGGAGGTAACTTTCATTTTCTGAGAC--TGGCTCCGTGAGCATGCTGGTAGTAGTGGTTAGTATCATGGAGCGCCTTCAGCTG
s panTro5.chr6              29000841 316 + 175400573 TAAGTGAAGGCAATCCATTGGGTTACGTTTTTACTCTCTATACGTGCAGAAATAGGATAGAAAAAGGTGAGGAGGCAGAAGGCTATGTTGCTTGAGAATTACATTTGAGCACTGCCAGAGCAAAACCACC-ATTtggtggtgccggggatcgaacccggggcctcacacatgcaaagcatgtgccctaccactgagctacaccgc--cCTCCTG-AAAGACTGTTTTGTAATAATTTTCAGGAGGTAACTTTCATTTTCTGAGAC--TGGCTCTGTGAGCATGCTGGTAGTAGTGGTTAGTATCATGGAGCGCCTTCAGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29244479 316 + 173848474 TAAGTGAAGGCAATCCATTGGGTTACGTTTTTACTCTCTATACGTGCAGAAATAGGATAGAAAAAGGTGAGGAGGCAGAAGGCTATGTTGCTTGAGAATTACATTTGAGCACTGCCAGAGCAAAACCACC-ATTtggtggtgccggggatcgaacccggggcctcacacatgcaaagcatgtgccctaccactgagctacaccac--cCTCCTG-AAAGACTGTTTTGTAATAATTTTCAGGAGGTAACTTTCATTTTCTGAGAC--TGGCTCTGTGAGCATGCTGGTAGTAGTGGTTAGTATCATGGAGCGCCTTCAGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5035352 315 +   6154872 TAAGTCAAGGCAATCCATTGGGTTACGTTTTTACTCTCTATACGTGCAGAAATAGGATAGAAAAAGGTGAGGAGGCAGAAGGCTATGTTGCTTGAGAATTACATTTGAGCACTGCCAGAGCAAAACCACC-ATTtggaggtgccggggatcgaacccggggcctcacaca-gcaaagcatgtgccctaccactgagctacacccc--cCTCCTG-AAAGACTGTTTTGTAATAATTTTCAGGAGGTAACTTTCATTTTCTGAGAC--TGGCTCCGTGAGCATGCTGGTAGTAGTGGTTAGTATCATGGAGCGCCTTCAGCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74038327 316 + 122973662 TAAGTGAAGGCCATCCATTGGGTTACGTTTTTACTCTCTATACGTGCAGAAATAGGATAGAAAAAGATGAGGAGACAGAAGGCTATGTTGCTTGAGAATTACGTTTGAGCACTGCCAGAGCAAAACCACC-ACTtggaggtgccggggatcgaacccggggcctcatacatgcaaagcatatgctctaccactgagctacacccc--cCTCCTG-AAAGACCGTTTTATAATAATTTTCAGGAGGTAACTTTCATTTCCTGAGAC--TGGCTCCGTGAGCATGCTGATAGTAGTGGTTAGTATTATGGAGCGTCTGCAGCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29180545 316 + 172585720 TAAGTGAAGGCAGTTCATTGGGTTACGTTTTTACTCTCCATACATGCAGAAATAGGATAGAAAAAGGTGAGGAAGCAGAAGGCCATGTTGCTTGAGAATTAGGTTTGAGCACTGCCAGAGCAAAACCACC-ACTtggaggtgctggggatcgaacccagggcctcatacatgcaaagcatgcgctctaccactgagctacacccc--cTTCCTG-AAAGACTATTTTATAATAATTTTCAGGAAGTAACTTTCATTTTCTGAGAC--TGTCTCCGTGAGCATGCTGGTAGTAGTGGTTAGTATTACGGAGCGTCTGCAGCTG
i rheMac8.chr4             T 23453 I 99544
s macFas5.chr4              28870437 314 - 170955103 --AGTGAAGGCAGTTCATTGGGTTACGTTTTTACTCTCCATACATGCAGAAATAGGATAGAAAAAGGTGAGCAAGCAGAAGGCCGTGTTGCTTGAGAATTAGGTTTGAGCACTGCCAGAGCAAAACCACC-ACTtggaggtgctggggatcgaacccagggcctcatacatgcaaagcatgcgctctaccactgagctacacccc--cTTCCTG-AAAGACTATTTTATAATAATTTTCAGGAAGTAACTTTCATTTTCTGAGAC--TGTCTCCGTGAGCATGCTGGTAGTAGTGGTTAGTATTACGGAGCGTCTGCAGCTG
i macFas5.chr4             C 0 I 58427
s macNem1.NW_012011356v1     1840354 316 -   2996164 TAAGTGAAGGCAGTTCATTGGGTTACGTTTTTACTCTCCATACATGCAGAAATAGGATAGAAAAAGGTGAGGAAGCAGAAGGCCATGTTGCTTGAGAATTAGGTTTGAGCACTGCCAGAGCAAAACCACC-ACTtggaggtgctggggatcgaacccagggcctcatacatgcaaagcatgcgctctaccactgagctacacccc--cTTCCTG-AAAGACTATTTTATAATAATTTTCAGGAAGTAACTTTCATTTTCTGAGAC--TGTCTCCGTGAGCATGCTGGTAGTAGTGGTTAGTATTACGGAGCGTCTGCAGCTG
i macNem1.NW_012011356v1   C 0 I 65924
s cerAty1.NW_012001495v1     1737243 314 -   2157725 TAAGTGAGGGCAATCCATTGGGTTACATTTTTACTCTCCATACATGCAGAAATAGGATAGAAAAAGGTGAGGAAGCAGAAGGCCATGTTGCTTGAGAATTAGGTTTGAGCACTGCCAGAGCAAAACCACC-GTTtggaggtgctggggatcgaacccagggcctcatacatgcaaagcatgcgctctaccactgagctacacccc--cTTCCTG-AAAGACTATTTTATAATAATTTTCAGGAGGTAACTTTCATTTTCTGAGAC----TCTCCGTGAGCATGCTGGTAGTAGTGGTTAGTATTATGGAGCGTCTGCAGCTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28190492 316 -  71996105 TAAGTGAAGGCAGTTCATTGGGTTACGTTTTTACTCTCCATACATGCAGAAACAGGATAGAAAAAGGTGAGGAAGCAGAAGGCCATGTTGCTTGAGAATTAGGTTTGAGCACTGCCAGAGCAAAACCACC-ATTtggaggtgctggggatcgaacccagggcctcatacatgcaaagcatgcgctctaccactgagctacacccc--cTTCCTG-AAAGACTACTTTGTAATAATTTTCAGGAAGTAACTTTCATTTTCTGAGAC--TGTCTCCGTGAGCATGCTGGTAGTAGTGGTTAGTATTATGGAGCGTCTGCAGCTG
i chlSab2.chr17            C 0 I 40661
s manLeu1.NW_012104165v1     1843564 314 +   2316924 TAAGTGAGGGCAATCCATTGGGTTACATTTTTACTCTCCATATATGCAGAAATAGGATAGAAAAAGGTGAGGAAGCAGAAGGCCATGTTGCTTGAGAATTAGGTTTGAGCACTGCCAGAGCAAAACCACC-GTTtggaggtgctggggatcgaacccagggcctcatacatgcaaagcatgcgctctaccactgagctacacccc--cTTCCTG-AAAGACTATTTTATAATAATTTTCAGGAGGTAACTTTCATTTTCTGAGAC----TCTCCGTGAGCATGCTGGTAGTAGTGGTTAGTATTATGGAGCGTCTGCAGCTG
i manLeu1.NW_012104165v1   C 0 I 29723
s colAng1.NW_012115566v1     1720235 316 -   3067355 TAAGTGAGGGCAGTTCATTGGGTTACGTTTTTACTCTCCATACATGCGGAAATAGGATAGAAAAAGGTGAGGAAGTAGAAGGCCATGTTGCTTGAGAATTAGGTTTGAGCACCGTCAGAGCAAAACTACC-ATTtggaggtgctggggatcgaacccagggcctcatacatgcaaagcatgcgctctaccactgagctacacccc--cTTCCTG-CAAGATTGTTTTATAACAATTTTCAGGAAGTAGCTTTCATTTTCTGAGAC--TGTCTCCATGAGCATGCTGGTAGTAGTGGTTAGTATTATGGAGTGTCTGCAGCTG
i colAng1.NW_012115566v1   C 0 I 68180
s calJac3.chr4             171317316 307 - 171630274 TAAGTGAAGGCAACGCATTG-------TTTTTACTCCCCATGTGTGCAGAAGTGGGATAGAAAAAGTTGAGGAAACAGAAGTCTATGTCGCTTGAGAATTAGGTTTGAGCACTGTCAGAGCAAAAACACCTATTtggaggtgccggggatcgaacccggggcctcatacatgcaaagcatgcgctctaccactgagctacaccccc-CTTCCTG-ATACGCC-CTTTGTAGTAATTTTCGGGGAGTAACTTTGGTTTTCTGAGAC--TGGCTCCGTGAGTTCGCTGGTAGCAGTG---AATAATGCGGAGAGTCTGCAGCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            135997 295 -    375362 TAAGTGAAGGCAACGCATTG-------TTTTTACTCCCTGTATGTGCAGAAGTAGGGTAGAAA---------------AAGTCTATGTTGCTTGAGAATTAGGTTTGAGCACTGCCAGAGCAAAAGCACCTGCTtggaggtgccggggatcgaacccggggcctcatacacgcaaagcatgcgctctaccactgagctacacccccGCTTCCCG-AAACGCT-CTTTGTAGTGATTTTCCGGAGGTAACTTTGGTTTTCTGAGACGTTGGCTCCATGAGCTCGCTGGTAGCAGTG---AATAATGCGGAGAGACGGCAGCTG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      139562 307 -    373274 TAAGTGAAGGCAACGCATTG-------CTTTTGCTCTCTATATGTGCAGAAGTAGGATAGAAAAAGTTGAGAAAACAGAAGTCTATGTCGCTTGAGAATTAGGTTTGAGCATTGCCAGAGCAAAATCACCTATTtggaggtgccggggatcgaacccggggcctcatacatgcaaagcatgcgctctaccactgagctacaccccc-CTTCCTG-AAACGCC-CTTTGTAGTAATTTTCGGGAGGTAAC--TGTTTTACTGAGGCTTTGGCTCGGTGAGCTCGCTGGTAGCAATG---AATAATGCGGAGATTCTGCAGCTG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       85600 309 -    285216 TAAGTGAAGGCAACGCATTG-------TTTTTAGTCTCTATATGTGCAGAAGTAGGATAGAAAAAGTTGAGGAAACAGAAGTCTATGTCGCTTGACAATTAGGTTTGAGCACTGCCAGAGCAAAAACACCTATTtggaggtgccggggatcgaacccggggcctcatacatgcaaagcatgcgctctaccactgagctacaccccc-CTTTCTG-AAACACC-CTTTGTAGTAATTTTCGGGAGGTAACTTTGGTTTTCTGAGACTTTGGCTCCGTGAGCTCGCTGGTAGCAGTG---AATAATGTGGAAAGTTTGCAGCTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479826 306 -   2232465 GAATTCAAGGCAATCCTTTGGTTTGTATTTTTTCTTTCTATGTATGTAGAAATTGAATAGAAAAAATTCAGGGAACTAAAAA-TGGATTTCTTGAGAAATAGACTCAAACAC---AAAAGTAAAA------CCTtggaggtgccggggatcgaacccggggcctcatacatgcaaagcatgcgctctaccactgagctacacccc--cTTCTTTCAGAGGTTGTTTGTTAGCATTTGTCTGGAAG--ACTT--ACCTTCTTAGACTTTGGTTCTGTGAACTTTTTGGTGGTAGTGGTCAGCACCAAGGAGCATTGGCAGCCA
i otoGar3.GL873742         C 0 C 0

a score=322629.000000
s hg38.chr6_GL000254v2_alt     24139 42 +   4827813 CTCTGAGTAGAAGATACTCG-GTACTAATGAGGGGATACAGAT
s panTro5.chr6              29001157 42 + 175400573 CTCTGAGTAGAAGATACTCG-GTACTAATGAGGGGATACAGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29244795 42 + 173848474 CTCTGAGTAGAAGATACTCG-GTACTAATGAGGGGATACAGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5035667 42 +   6154872 CTCTGAGTAGAAGATACTCT-GTACTAATGAGGGGATACAGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74038643 42 + 122973662 CTCTGAGTAGAAGATACTCG-GTACTAATGAGGGGATACAGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280405 41 + 172585720 TTCTGAGCAGGAGATACTTG-GTACTAATG-GGGGATACAGAT
i rheMac8.chr4             I 99544 C 0
s macFas5.chr4              28929178 41 - 170955103 TTCTGAGCAGGAGATACTTG-GTACTAATG-GGGGATACAGAT
i macFas5.chr4             I 58427 C 0
s macNem1.NW_012011356v1     1906594 41 -   2996164 TTCTGAGCAGGAGATACTTG-GTACTAATG-GGGGATACAGAT
i macNem1.NW_012011356v1   I 65924 C 0
s chlSab2.chr17             28231469 41 -  71996105 CTCTGAGCAGGAGATATTTG-GTACTAATG-GGGGATACAGAT
i chlSab2.chr17            I 40661 C 0
s manLeu1.NW_012104165v1     1873601 41 +   2316924 CTGTGAGTAGAAGATCCTCG-GTACTAATA-GGGGATATAAAT
i manLeu1.NW_012104165v1   I 29723 C 0
s colAng1.NW_012115566v1     1788731 41 -   3067355 TTCTGAGCAGGAGATACTTG-GTACTAACG-GGGGATACAGAT
i colAng1.NW_012115566v1   I 68180 C 0
s calJac3.chr4             171317623 35 - 171630274 CTCTGAGTAGAAGA--------TACTAAGGAGGGGATACAGAt
i calJac3.chr4             C 0 I 875
s saiBol1.JH378348            136292 42 -    375362 CTCTGAGTAGAAGATACTCG-GTACTAATGAGGGGATACAGAT
i saiBol1.JH378348         C 0 I 695
s cebCap1.NW_016108108v1      139869 42 -    373274 CTCTGAGTAGAAGATACTCG-GTATTAATGAGAAGATACAGAt
i cebCap1.NW_016108108v1   C 0 I 924
s aotNan1.NW_018494050v1       85909 42 -    285216 CTCTGAGTAGAAGATACTCG-GTACTCATGAGGGGATACAGAt
i aotNan1.NW_018494050v1   C 0 I 915
s otoGar3.GL873742           1480132 42 -   2232465 CGATGGGTAGACGATGATCACGTACCAGTA-GGAAACACAAAA
i otoGar3.GL873742         C 0 C 0
e cerAty1.NW_012001495v1     1737557  0 -   2157725 C

a score=260534.000000
s hg38.chr6_GL000254v2_alt     24181 33 +   4827813 TCTTTA-----------------GTATACTGTACAGGACTTGAAATGGAA
s panTro5.chr6              29001199 33 + 175400573 TCTTTA-----------------GTATACTGTACAGGACTTGAAATGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29244837 33 + 173848474 TCTTTA-----------------GTATACTGTACAGGACTTGAAATGGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5035709 33 +   6154872 TCTTTA-----------------GTATACTGTACAGGACTTGAAATGGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74038685 32 + 122973662 TCTTTA-----------------GTATACTGTACAAGACTTGAAATGG-A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280446 33 + 172585720 TCTTTA-----------------GAATACTATGTAGGACTTGAAATGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28929219 33 - 170955103 TCTTTA-----------------GAATACTATGTAGGACTTGAAATGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1906635 33 -   2996164 TCTTTA-----------------GAATACTATGTAGGACTTGAAATGAAA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28231510 33 -  71996105 TCTTTA-----------------GAATGCTGTGTAGGGCTTGAAACGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1873642 33 +   2316924 TATTTA-----------------GAATACCGTATACGACATGAAATGGAA
i manLeu1.NW_012104165v1   C 0 T 29797
s colAng1.NW_012115566v1     1788772 33 -   3067355 TCTTTA-----------------GAATACTATGTAGGACTTGAAATGAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171318533 33 - 171630274 TCTTTA-----------------GAATACTGCATAGTACTTGAAATGGAA
i calJac3.chr4             I 875 C 0
s saiBol1.JH378348            137029 33 -    375362 TCTTTA-----------------AAATACTGCATAGTACTTGAAATGGAA
i saiBol1.JH378348         I 695 C 0
s cebCap1.NW_016108108v1      140835 33 -    373274 TCTTTA-----------------GAATACTGCATAGTACTTGAAATGGAA
i cebCap1.NW_016108108v1   I 924 C 0
s aotNan1.NW_018494050v1       86866 33 -    285216 TCTTTA-----------------GAATACTGCATAGTACTGGAAATGGAA
i aotNan1.NW_018494050v1   I 915 C 0
s otoGar3.GL873742           1480174 49 -   2232465 -CTTGAAATGGAAGGTAAAACTTGAATACTACATAAAACTTGAAATGGAA
i otoGar3.GL873742         C 0 C 0
e cerAty1.NW_012001495v1     1737557  0 -   2157725 C

a score=64023.000000
s hg38.chr6_GL000254v2_alt     24214 12 +   4827813 AGCAAAGTATTA
s panTro5.chr6              29001232 12 + 175400573 AGCAAAGTATTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29244870 12 + 173848474 AGCAAAGTATTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5035742 12 +   6154872 AGCAAAGTATTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74038717 12 + 122973662 AGCAAAGTATTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280479 12 + 172585720 AACAAAAGATTA
i rheMac8.chr4             C 0 T 99630
s macFas5.chr4              28929252 12 - 170955103 AACAAAAGATTA
i macFas5.chr4             C 0 T 58513
s macNem1.NW_012011356v1     1906668 12 -   2996164 AACAAAAGATTA
i macNem1.NW_012011356v1   C 0 T 66010
s chlSab2.chr17             28231543 11 -  71996105 AACAAAAGATA-
i chlSab2.chr17            C 0 T 40746
s colAng1.NW_012115566v1     1788805 12 -   3067355 AACAAAAGATTA
i colAng1.NW_012115566v1   C 0 T 68266
s calJac3.chr4             171318566 12 - 171630274 CTCAAAATATTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            137062 12 -    375362 CGCAAAATATTA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      140868 12 -    373274 CGCAAAATATTA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       86899 12 -    285216 GGCTAAATATTA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480223 12 -   2232465 GGTAAAAGATTG
i otoGar3.GL873742         C 0 C 0
e manLeu1.NW_012104165v1     1873675 29797 +   2316924 T
e cerAty1.NW_012001495v1     1737557  0 -   2157725 C

a score=2595293.000000
s hg38.chr6_GL000254v2_alt     24226 252 +   4827813 GAAAAGTGTCAGATAACCGCCAAAAGAAGTTTCCAATGTGGCTTTAAAACGTTGAGTTGTCAGGATCTCCTTCTTCTGTTATGCTTGGCAAGGAATCAAATTCTGGTTTTTCATTC-TTTCGATTTCTTTCAGAGATGACGCAAAGTTATTGAAATTCAGCTTTTTCTTACCTAAAATGCTTCATATTTGTTGTTTACTCAGCCGGAATATTAAAGGTTAGATTTGATTGAGGAAAATCACAGTCAGAAGAAA
s panTro5.chr6              29001244 252 + 175400573 GAAAAGTGTCAGATAACCGCCAAAAGAAGTTTCCAATGTGGCTTTAAAACGTTGAGTTGTCAGGATCTCCTTCTTCTGTTATGCTTGGCAAGGAATCAAATTCTGGTTTTTCATTC-TTTCGATTTCTTTCAGAGATGACGCAAAGTTATTGAAATTCAGCTTTTTCTTACCTAAAATGCTTCATATTTGTTGTTTACTCAGCCGGAATATTAAAGGTTAGATTTGATTGAGGAAAATCACAGTCAGAAGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29244882 252 + 173848474 GAAAAGTGTCAGATAACCGCCAAAAGAAGTTTCCAATGTGGCTTTAAAACGTTGAGTTGTCAGGATCTCCTTCTTCTGTTATGCTTGGCAAGGAATCAAATTCTGGTTTTTCATTC-TTTCGATTTCTTTCAGAGATGACGCAAAGTTATTGAAATTCAGCTTTTTCTTACCTAAAATGCTTCATATTTGTTGTTTACTCAGCCGGAATATTAAAGGTTAGATTTGATTGAGGAAAATCACAGTCAGAAGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5035754 252 +   6154872 GAAAAGTGTCAGATAACCGCCAAAAGAAGTTTCCATTGTGGCTTTAAAACGTTGAGTTGTCAGGATCTCCTTCTTCTGTTATGCTTGGCAAGGAATCAAATTCTTGTTTTTCATTC-TTTCGATTTCTTTCAGAGATGACGCAAAGTTATTGAAATTCAGCTTTTTCTTACCTAAAATGCTTCATATTTGTTGTTTACTCAGCCGGAATATTAAAGGTTAGATTTGATTGAGGAAAATCACAGTCAGAAGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74038729 252 + 122973662 GAAAAGTGTCAGATAACCGCCACAAGAAGTTTCCACTGTGGCTTTAAAACGTTGAGTTGTTAGGATCTCCTTCTTCTGTTATGCTTGGCAAGGAATCAAATTGTGGTTTTTCATTC-TTTCGATTTCTTTCAGAGATGACACAAAGCTATCGAAATTCAGCTTTTTCTTACCTAAAATGCTTCATATTTGTTGTTTACTCAGCCAGAATATTAAAGGTTAGATTTGATTGAGGAAAGTCACAGTCAGAAGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29180861 252 + 172585720 GAAAAGTGTCAGACAATCACCACAATAAGTTTCCATTGTGGCTTTAAAACGTTGAGTTGTTAGGATCTCCTTCTTCTGTTATGCTTGGCAAGGAATCAAGTTCTAGTTTTTCATTC-TTTTGATTTCTTTCAGAAATGACACAAAGCTATTGAAATTCAGCTTTTTCTTACCTAAAATGCTTCATATTTGTTGTTTTCTCAGCCAGAATATTAAAGGTTAGATTCGATTGAGGAAAGCCACAGTCAGAAGAAA
i rheMac8.chr4             T 99630 C 0
s macFas5.chr4              28870751 252 - 170955103 GAAAAGTGTCAGACAATCACCACAATAAGTTTCCATTGTGGCTGTAAAACGTTGAGTTGTTAGGATCCCCTTCTTCTGTTATGCTTGGCAAGGAATCAAGTTCTAGTTTTTCATTC-TTTTGATTTCTTTCAGAAATGACACAAAGCTATTGAAATTCAGCTTTTTCTTACCTAAAATGCTTCATATTTGTTGTTTTCTCAGCCAGAATATTAAAGGTTAGATTCGATTGAGGAAAGCCACAGTCAGAAGAAA
i macFas5.chr4             T 58513 C 0
s macNem1.NW_012011356v1     1840670 252 -   2996164 GAAAAGTGTCAGACAATCACCACAATAAGTTTCCACTGTGGCTTTAAAACGTTGAGTTGTTAGGATCTCCTTCTTCTGTTATGCTTGGCAAGGAATCAAGTTCTAGTTTTTCATTC-TTTTGATTTCTTTCAGAAATGACACAAAGCTATTGAAATTCAGCTTTTTCTTACCTAAAATGCTTCATATTTGTTGTTTTCTCAGCCAGAATATTAAAGGTTAGATTCGATTGAGGAAAGCCACAGTCAGAAGAAA
i macNem1.NW_012011356v1   T 66010 C 0
s cerAty1.NW_012001495v1     1737557 252 -   2157725 GAAAAGTGCCAGACAACCGCCACAATAAGTTTCCATTGTGGCTTTAAAACGTTGAGTTATTAGGATCTCCTTCTTCTGTTATGCTTGGCAAGGAATCAAATTCTAGTTTTTCATTC-TTTTGATTTCTTTCAGAAATGACACAAAGCTACTGAAATTCAGCTTTTTCTTACCTAAAATGCTTCATATTTGTTGTTTTCTCAGCCGGAATATTAAAGGTTATATGTGATTGAGGAAAGTCACAGTCAGAAGAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28190808 252 -  71996105 GAAAAGTGTCAGACAACCACCACAATAAGTTTCCATTGTGGCTTTAAAATGTTGAGTTGTTAGGATCTCCTTCTTCTGTAATGTTTGACAAGGAATCAAATTCTAGTTTTTCATTC-TTTTGATTTCTTTCAGAAATGACACAAAGCTATTGAAATTCAGCTTTTTCTTACCTAAAATGCTTCATATTTGTTGTTTTCTCAGCCGGAATATTAAAGGTTAGATTCGATTGAGGAAAGCCACAGTCAGAAGAAA
i chlSab2.chr17            T 40746 C 0
s manLeu1.NW_012104165v1     1843878 252 +   2316924 GAAAAGTGCCAGACAACCGCCACAATAAGTTTTCATTGTGGCTTTAAAACGTTGAGTTATTAGGATCTCCTTCTTCTGTTATGCTTGGCAAGGAATCAAATTCTAGTTTTGCATTC-TTTTGATTTCTTTCAGAAATGACACAAAGCTACTGAAATTCAGCTTTTTCTTACCTAAAATGCTTCATATTTGTTGTTTTCTCAGCCGGAATATTAAAGGTTAGATGTGATTGAGGAAAGTCACAGTCAGAAGAAA
i manLeu1.NW_012104165v1   T 29797 C 0
s colAng1.NW_012115566v1     1720551 252 -   3067355 GAAAAGTGTCAGACAACGGCCACAATAAGTTTCCATTGTGGCTTTAAAACGTTGAGTTGTTAGGATCTCCTTTTTCTGTTATGCTTGGCAAGGAATCAAATTCTAGTTTTTCATTC-TTTTGATTTCTTTCAGAAATGACACAAAGCTATTGAAATACAGCTTTTTCTTACCTAAAATGCTTCATATTTGTTGCTTTCTCAGCCGGAATATTAAAAGTTAGATTCGATTGAGGAAAGCCACAGTCAGAAGAAA
i colAng1.NW_012115566v1   T 68266 C 0
s calJac3.chr4             171318578 247 - 171630274 GAAAAGTGTCAGATAACTGCCACAAGATGTTTCCA-TGTGGCTGTAAAACGTTGAGCTGTTAGGATCTCCTTCTTCTATTATGCTTGACAAGAAATCAACTTCTGGTTTTTCATTC-----AATTTCTCCCAGAGATGACACAAAGCTATTGAAATTCAGCTGTTTCCTACTTAAAATGCTTCATATTTGTTGTTAACTCAGTCAGAAGACTAAAGGTTAGATTTGATTGAGGAAAGTCACAGTCAGAAGAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            137074 253 -    375362 GAAAAGTGTCAGATAAATGCCACAGGAAGTTTCCACTGTGGCTTTAAAACGTTGAGCTGTTAGGATCTCCTTCTTCTATTATGCTTGGCAAGAAATCAAATTCGGGTTTTTCATTCTTTTGATTTTTTTCCAGAGATGACACAAAGCTATTGAAATTCAGCTTTTTCCTACTTAAAATGCTTCATATTTGTTGTTTACTCAGTCAGAATACTAAAGGTTAGATTTGATTGAAGAAAGTCACAGTCAGAAGAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      140880 248 -    373274 GAAGAGTGTCAGATAACTGCCACAAGAAGTTTCCATCGTGGCTTTAAAACGTTGGGCTGTTAGGATCTCCTTCTTCTATTATGCTTGGCAAGAAATCAAATTCTGGTTTTTCATTC-TTTAGATTTTTTCCAGAGATGACACAAAGCTATTGAAATTCAGCTTTTTCCTAGTTAAAACGCTTCATATTTGTTGTTT----AGTCAGAATACTAAAGGTTAGAATTGATCAAGGAAAGTCACAGTCAGAAGAAA
i cebCap1.NW_016108108v1   C 0 I 299
s aotNan1.NW_018494050v1       86911 245 -    285216 GAAAAGTGTCAGATAACTGCCACAAGAAGTTTCCATTGTGGCTTTCAAACGTTGAGCTGTCAGGATCTC---CTTCTATTACGCTTGGCAAGAAATCAAATTCTGGTTTTTCGTTC-TTTTGATTTTTTCCAGAGATGACACAAAGCTATTGAAATTCAGCTTTTTCCTACTTAAAATGCTTCATATTTGTTGTTT----ACTCATAATACTAAAGGTTAGATCTGATTGAGGAAAGTCACAGTCAGAAGAAA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480235 217 -   2232465 AAAACGTGTCAAATAACAACCAAAAGAAGTTCCCTTTGTGGCTTTGAAATGTTAAGTTGTTAGATTCTACTTCTGTT----TGCTTAGCAAGGAATCAGGTTCTGGTTTTCTATTC-TTTTGATTTCTCCCAG----GACAGATGGCTATTAAAATTTA-----------------------CATATTTGT---TTTCTCAATCAGAATATTAATGGACAGATTTGATGCCAGACAGCCATCATCAAAGAAA-
i otoGar3.GL873742         C 0 C 0

a score=25976.000000
s hg38.chr6_GL000254v2_alt     24478 2 +   4827813 AC
s panTro5.chr6              29001496 2 + 175400573 AC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29245134 2 + 173848474 AC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036006 2 +   6154872 AC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74038981 2 + 122973662 AC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29181113 2 + 172585720 AC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28871003 2 - 170955103 AC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1840922 2 -   2996164 AC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1737809 2 -   2157725 AC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28191060 2 -  71996105 AC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1844130 2 +   2316924 AC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1720803 2 -   3067355 AC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171318825 2 - 171630274 AC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            137327 2 -    375362 AC
i saiBol1.JH378348         C 0 I 372
s cebCap1.NW_016108108v1      141427 2 -    373274 AC
i cebCap1.NW_016108108v1   I 299 C 0
s aotNan1.NW_018494050v1       87156 2 -    285216 AC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480452 2 -   2232465 AC
i otoGar3.GL873742         C 0 C 0

a score=23896.000000
s hg38.chr6_GL000254v2_alt     24480 2 +   4827813 CT
s panTro5.chr6              29001498 2 + 175400573 CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29245136 2 + 173848474 CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036008 2 +   6154872 CT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74038983 2 + 122973662 CT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29181115 2 + 172585720 CT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28871005 2 - 170955103 CT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1840924 2 -   2996164 CT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1737811 2 -   2157725 CT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28191062 2 -  71996105 CT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1844132 2 +   2316924 CT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1720805 2 -   3067355 CT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171318827 1 - 171630274 -T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            137701 2 -    375362 CT
i saiBol1.JH378348         I 372 C 0
s cebCap1.NW_016108108v1      141429 2 -    373274 CT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       87158 2 -    285216 CT
i aotNan1.NW_018494050v1   C 0 I 17634
s otoGar3.GL873742           1480454 2 -   2232465 CT
i otoGar3.GL873742         C 0 C 0

a score=44480.000000
s hg38.chr6_GL000254v2_alt     24482 4 +   4827813 GAGA
s panTro5.chr6              29001500 4 + 175400573 GAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29245138 4 + 173848474 GAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036010 4 +   6154872 GAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74038985 4 + 122973662 GAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29181117 4 + 172585720 GAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28871007 4 - 170955103 GAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1840926 4 -   2996164 GAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1737813 4 -   2157725 GAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28191064 4 -  71996105 GAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1844134 4 +   2316924 GAGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1720807 4 -   3067355 GAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171318828 4 - 171630274 TAGg
i calJac3.chr4             C 0 I 133
s saiBol1.JH378348            137703 4 -    375362 GAGA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      141431 4 -    373274 GAGA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      104794 4 -    285216 GAGA
i aotNan1.NW_018494050v1   I 17634 C 0
s otoGar3.GL873742           1480456 4 -   2232465 GAGA
i otoGar3.GL873742         C 0 C 0

a score=318993.000000
s hg38.chr6_GL000254v2_alt     24486 34 +   4827813 GCGATGCACTCAGCATTTCATCTTAAGGGTCTtt
s panTro5.chr6              29001504 34 + 175400573 GCGATGCGCTCAGCATTTCATCTTAAGGGTCTtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29245142 34 + 173848474 GCGATGCGCTCAGCATTTCATCTTAAGGGTCTtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036014 34 +   6154872 GCGATGCACTCAGCATTTCATCTTAAGGGTCTtt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74038989 34 + 122973662 GCGATGCACTCAGCATTTCATCTTAAGGGTCTtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29181121 34 + 172585720 GCGATGCACTCAGCATTTCATCATAAGGGTCTtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28871011 34 - 170955103 GCGATGCACTCAGCATTTGATCATAAGGGTCTtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1840930 34 -   2996164 GCGATGCACTCAGCATTTCATCATAAGGGTCTtt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1737817 34 -   2157725 GCGATGCACTCAGCATTTCATCATCAGGGTCTtt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28191068 34 -  71996105 GCGATGCACTCAGCATTTCATCATAAGGGTCTtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1844138 34 +   2316924 GCGATGCACTCAGCATTTCATCATCAGGGTCTtt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1720811 34 -   3067355 GCCATGCACTCAGCATTTCATCATAAGGGTCTTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            137707 34 -    375362 GCGATGCACTCAGCATTTCATCGTAAGGGTCTtt
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      141435 34 -    373274 GCGATGCACTCCGCATTTCATCATAAGGGTCTtt
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      104798 34 -    285216 GGGATGCACTCAGTATTTTTCCATAAGGGTCCCT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480460 34 -   2232465 AATATGCATTCAATATTTCATTATAAGACTCTTT
i otoGar3.GL873742         C 0 I 62
e calJac3.chr4             171318832 133 - 171630274 I

a score=7847.000000
s hg38.chr6_GL000254v2_alt     24520 1 +   4827813 a
s panTro5.chr6              29001538 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29245176 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036048 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74039023 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29181155 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28871045 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1840964 1 -   2996164 a
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1737851 1 -   2157725 a
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28191102 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1844172 1 +   2316924 a
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1720845 1 -   3067355 A
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            137741 1 -    375362 a
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      141469 1 -    373274 a
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      104832 1 -    285216 G
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1480494 62 -   2232465 I
e calJac3.chr4             171318832 133 - 171630274 I

a score=1131288.000000
s hg38.chr6_GL000254v2_alt     24521 136 +   4827813 gctgg-tgtgttgtcctgcgcctgtactcacagctattccagaggctgaagcaggaggatcacttgaccttgggagctggaggctgcagggagctat-gatcacgccactgcactccagcttgggtgatggagtgaga
s panTro5.chr6              29001539 135 + 175400573 gctgg-tgtgttgtcctgcgcctgtactcacagctattccagaggctgaagcaggaggatcacttgaccttgggagctggaggctgcggggagctac-gatcac-ccactgcactccagcctgggtgatggagtgaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29245177 135 + 173848474 gctgg-tgtgttgtcctgcgcctgtactcacagctattccagaggctgaagcaggaggatcacttgaccttgggagctggaggctgcggggagctac-gatcac-ccactgcactccagcctgggtgatggagtgaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036049 136 +   6154872 gctgg-tgtgttgccctgcgcctgtactcacagctattccagaggctgaagcaggaggatcacttgaccttgggagctggaggctgcagggagctat-gatcacgccactgcactccagcctgggtgatggagtgaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74039024 135 + 122973662 gctgg-cgtgttgtcctgcacctgtactcatagctaatccagaggctgaggcaggagaatcacttgacctcgggagctggaggct-cagggagctat-gatcatgccactgcgctccagcctcggtgatggagtgaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29181156 136 + 172585720 gctgg-catggtgtcctgcgcctgtactcacagctattccagaggctgaggcaggaggatcactcgaccttgggagctggaggtggcagggagctat-gatcacgccactgcactccagactgggtgatggagtgaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28871046 136 - 170955103 gctgg-catggtgtcctgcgcctgtactcacagctattccagaggctgaggcaggaggatcactcgaccttgggagctggaggtggcagggagctat-gatcacgccactgcactccagactgggtgatggagtgaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1840965 136 -   2996164 gctgg-catggtgtcctgcgcctgtactcacagctattccagaggctgaggcaggaggatcactcgaccttgggagctggaggtggcagggagctat-gatcacgccactgcactccagactgggtgatggagtgaga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1737852 137 -   2157725 gctgg-catggtgtcctgcgcctgtactcacagctattccagaggctgaagcaggaggatcactcgaccttgggagctggaggtggcagggagctatggatcacgccactgcactccagtgtgggtgatggagtgaga
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28191103 136 -  71996105 gctgg-catggtgtcctgcgcctgtactcacagctattccagaggctgaggcaggaggatcactccgccttgggagctggaggtggcagggagctat-gatcacgccactgcactccagactgggtgatggagtgaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1844173 137 +   2316924 gctgg-catggtgtcctgcgcctgtactcacagctattccagaggctgaggcaggaggatcactcgaccttgggagctggaggtggcagggagctatggatcacgccactgcactccagtgtgggtgatggagtgaga
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1720846 125 -   3067355 GCTGG-CATGGTGTC-----------Ctcacagctattccagaggctgaggcaggaggatcactcgaccttgggaactggaggtggcagggagctat-gatcacgccactgcactccagactgggtgatggagtgaga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171318965 136 - 171630274 gctgggtgtggtggcaggcgcctgtagtcccagctactcaggaggttgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccga-gatcgagccattgcactccagcc-tggcggcagagctaga
i calJac3.chr4             I 133 C 0
s saiBol1.JH378348            137742 127 -    375362 gctggttgtggtgtcctgcacctgtactcacagctattccagaggctgaggtgggaggatcgcttgagc--------tggaggctgcagggagctac-gatcatgccactgcactctagccagggcaacggag--aga
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      141470 129 -    373274 gctggttgtggtgtcctgcaactgtactcacagctgttccagaggctgaggggggaggatcgctggagc--------tggaggctgcagggagctac-aatcatgctgctgcactctcgcctgggcgacggagagaga
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      104833 136 -    285216 GTTgg-cgtggcctctcacacctgaactcacagctactccagaggctgaggcacgaggatcgcttgagctcgggggttggtgattgtacggagctac-gactgtgccactgccctccagcctgggcaacggagtgaga
i aotNan1.NW_018494050v1   C 0 I 203
e otoGar3.GL873742           1480494  62 -   2232465 I

a score=170335.000000
s hg38.chr6_GL000254v2_alt     24657 28 +   4827813 ccctgtatcaaaatc-aaaaagaaaagaa
s panTro5.chr6              29001674 26 + 175400573 ccctgtatcaaaatc-aaaaagaaa--aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29245312 25 + 173848474 ccctgtatcaaaatc-aaaaagaa---aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036185 28 +   6154872 ccctgtatcaaaatc-aaaaagaaaagaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74039159 29 + 122973662 ccctgtatcaaaaacaaaaaagaaaagaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29181292 28 + 172585720 ccctgtatcaaaaac-aaaaagaaaagaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28871182 28 - 170955103 ccctgtatcaaaaac-aaaaagaaaagaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1841101 28 -   2996164 ccctgtatcaaaaac-aaaaagaaaagaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1737989 28 -   2157725 ctctgtatcaaaaac-aaaaagaaaagaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28191239 28 -  71996105 ccctgtatcaaaaac-aaaaagaaaagaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1844310 28 +   2316924 ctctgtatcaaaaac-aaaaagaaaagaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1720971 28 -   3067355 ccctgtatcaaaaac-aaaaagaaaagaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171319101 23 - 171630274 tcctgtctcaaa----aaaaagaaaaa--
i calJac3.chr4             C 0 I 9000
s saiBol1.JH378348            137869 23 -    375362 ccctgcatcaaa----gaaaataaaag--
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      141599 23 -    373274 ccctgcatcaaa----gaaaataaaag--
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1480494 62 -   2232465 I
e aotNan1.NW_018494050v1      104969 203 -    285216 I

a score=21996.000000
s hg38.chr6_GL000254v2_alt     24685 3 +   4827813 aag
s panTro5.chr6              29001700 3 + 175400573 aag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29245337 3 + 173848474 aag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036213 3 +   6154872 aag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74039188 3 + 122973662 aag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29181320 3 + 172585720 aag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28871210 3 - 170955103 aag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1841129 3 -   2996164 aag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1738017 3 -   2157725 aag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28191267 3 -  71996105 aag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1844338 3 +   2316924 aag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1720999 3 -   3067355 aag
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1480556 3 -   2232465 AAG
i otoGar3.GL873742         I 62 C 0
e saiBol1.JH378348            137892 0 -    375362 C
e aotNan1.NW_018494050v1      104969 203 -    285216 I
e cebCap1.NW_016108108v1      141622 0 -    373274 C
e calJac3.chr4             171319124 9000 - 171630274 I

a score=818750.000000
s hg38.chr6_GL000254v2_alt     24688 114 +   4827813 aaaaaTTTATAAGGTGTGAG--------------------TG-AAACAACACCTCTAGGGATGACGAGAAGAGTTGAATTATGAGGGTGAGATAAAAAATAAGTAGAAACAGGATTTAAGAGGTAC-GGGGGAAAG
s panTro5.chr6              29001703 114 + 175400573 aagaaTTTATAAGGTGTGAG--------------------TG-AAACAACACCTCTAGGGATGACGAGAAGAGTTGAATTATGAGGGTGAGATAAAAAATAAGTAGAAACAGGATTTAAGAGGTAC-AGGGGGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29245340 114 + 173848474 aagaaTTTATAAGGTGTGAG--------------------TG-AAACAACACCTCTAGGGATGACGAGAAGAGTTGAATTATGAGGGTGAGATAAAAAATAAGTAGAAACAGGATTTAAGAGGTAC-GGGGGGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036216 112 +   6154872 aaaaaTTTATAAGGTGTGAG--------------------TG-AAACAACACCTCTAGGGATGACGAGAAGAGTTGAATTATGAGGGTGAGATAAAAAATAAGTAGAAACAGGA-TTAAGAGGTAC--GGGGGAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74039191 114 + 122973662 aaaaaTTTATAAGGTGTGAG--------------------TG-AAACAACACCTCTGGGAATGACGAGAAGAGTTGAATTATGAGGGTGAGATAAAAAATAAGTAGAAACAGGATTTAAGAGGTAC-AGGGGAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29181323 113 + 172585720 aaaaaaTTTTAAGGTGTGAG--------------------TG-AAACAACAACTCTGGGGATGACGAGAAGAGTTGAATTATGAGGGTGAGATAAAAAATAAGTAG-AACAGG-TTTAAGAGGTATGGGGGGAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28871213 113 - 170955103 aaaaaaTTGTAAGGTGTGAG--------------------TG-AAACAACAACTCTGGGGATGACGAGAAGAGTTGAATTATGAGGGTGAGATCAAAAATAAGTAG-AACAGG-TTTAAGAGGTATGGGGGGAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1841132 113 -   2996164 aaaaaaTTGTAAGGTGTGAG--------------------TG-AAACAACGACTCTGGGGATGACGAGAAGAGTTGAATTATGAGGGTGAGATCAAAAATAAGTAG-AACAGG-TTTAAGAGGTATGGGGGGAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1738020 113 -   2157725 aaaaaaTTGTAAGGTGTGAG--------------------TG-AAACAACACCTCTGGGGATGACGAGAAGAGTTGAATTATGAGGGTGAGATAAAAAATAAGTAG-AACAGG-TTTAAGAGGTATGGGGGGAAAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28191270 114 -  71996105 aaaaaaTTGTAAGGTGTGAG--------------------TG-AAACAACAACTCTGGGGATGACGAGAAGAGTTGAATTGTGAGGGTGAGATCAAAAATAAGTAGAAACAGG-TTTAAGAGATACGGGGGGAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1844341 113 +   2316924 aaaaaaTTGTAAGGTGTGAG--------------------TG-AAACAACACCTCTGGGGATGACGAGAAGAGTTGAATTATGAGGGTGAGATAAAAAATAAGTAG-AACAGG-TTTAAGAGGTATGGGGGGAAAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1721002 114 -   3067355 aaaaaaTTGTGAGGTGTGAG--------------------TG-AAACAACACCTCTGGGGATGACGAGAAGAGCTGAATTATGAGGGTGAGATCAAAAATAAGTAGAAACAGG-TTTAAGAGGTATGGGGGAAAAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            137892 135 -    375362 aaaaaTTCATAAGGTGTGAGTGAAACAACACCTCTGGGGATG-AAACAACACCTCTGGGGATGAAAAGAAGAGTCGACTTATGAGAGTGACACCAAAGATATGCAGAAATAGGATTTAAGAGGTATAGGAGGAACA
i saiBol1.JH378348         C 0 I 1
s cebCap1.NW_016108108v1      141622 115 -    373274 aaaaaTTCATAAGGTGTGAG--------------------TG-AAACAACACCTCTGGGGATGAAGAGAAGAGTTGACTTATGAGAGTGAGACCAAAGATAAGCAGAAACAGGATTTAAGAGGTATAGGGGGAACA
i cebCap1.NW_016108108v1   C 0 I 1
s otoGar3.GL873742           1480559  99 -   2232465 AGAGATTCATAAGGTGTGGG--------------------AGTAAAGGACAGTTTCAGGGAAGGAGAGAAGAGTTGAATTATGAGAGTGAGACTTAAGATA------AACAGGATTTAAGGGATA-----------
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      104969 203 -    285216 I
e calJac3.chr4             171319124 9000 - 171630274 I

a score=205937.000000
s hg38.chr6_GL000254v2_alt     24802 22 +   4827813 TGGTTTAGAAAAACAAACAGGC
s panTro5.chr6              29001817 22 + 175400573 TGGTTTAGAAAAACAAACAGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29245454 22 + 173848474 TGGTTTAGAAAAACAAACAGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036328 22 +   6154872 TGGTTTAGAAAAACAAACAGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74039305 22 + 122973662 TAGTTTAGAAAAACAAACAGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29181436 22 + 172585720 TGGCTTAGAAAAACAAACAGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28871326 22 - 170955103 TGGCTTAGAAAAACAAACAGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1841245 22 -   2996164 TGGCTTAGAAAAACAAACAGGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1738133 22 -   2157725 TGGTTTAGAAAAACAAACAGGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28191384 22 -  71996105 TGGTTTAGAAAAACAAACAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1844454 22 +   2316924 TGGTTTAGAAAAACAAACAGGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1721116 22 -   3067355 TGGTTTAGAAAAACAAACAGGC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            138028 22 -    375362 TGGTTTAGAAAAACAAACAGGC
i saiBol1.JH378348         I 1 C 0
s cebCap1.NW_016108108v1      141738 22 -    373274 TGCTTTAGAAAAACAAACAGGC
i cebCap1.NW_016108108v1   I 1 C 0
s aotNan1.NW_018494050v1      105172 22 -    285216 TGGTTCAGAAAAACAAACATGC
i aotNan1.NW_018494050v1   I 203 C 0
s otoGar3.GL873742           1480658 13 -   2232465 ---------AAGACAAAAAAGC
i otoGar3.GL873742         C 0 I 50
e calJac3.chr4             171319124 9000 - 171630274 I

a score=-2948.000000
s hg38.chr6_GL000254v2_alt     24824 2 +   4827813 TA
s panTro5.chr6              29001839 2 + 175400573 TA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29245476 2 + 173848474 TA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036350 2 +   6154872 TA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74039327 2 + 122973662 TA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29181458 2 + 172585720 TC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28871348 2 - 170955103 TC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1841267 2 -   2996164 TC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1738155 2 -   2157725 TC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28191406 2 -  71996105 TC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1844476 2 +   2316924 TC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1721138 2 -   3067355 TC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            138050 1 -    375362 T-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      141760 1 -    373274 T-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      105194 2 -    285216 TA
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1480671 50 -   2232465 I
e calJac3.chr4             171319124 9000 - 171630274 I

a score=964984.000000
s hg38.chr6_GL000254v2_alt     24826 106 +   4827813 TTGCCAAACAGAAGGAGGTGTAGAAAAGGGGAGTTTTT---AACAACTCTTTAAGGAATGGGAGAAAGATTGGAAGATGGAGA--AGATAAGTTAGCTTGGCTCATGCTAA
s panTro5.chr6              29001841 106 + 175400573 TTGTCAAACAGAAGGAGGTGTCGAAAACGGGAGTTTTT---AACAACTCTTTAAGGAATGGGAGAAAGATTGGAAGATGGAGA--AGATAAGTTAGCCTGGCTCATGATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29245478 106 + 173848474 TTGTCAAACAGAAGGAGGTGTCGAAAACGGGAGTTTTT---AACAACTCTTTAAGGAATGGGAGAAAGATTGGAAGATGGAGA--AGATAAGTTAGCCTGGCTCATGATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036352 106 +   6154872 TTGCCAAACAGAAGGAGGGGTAGAAAAGGGGAGTTTTT---AACAACTCTTTAAGGAATGGGAGAAAGATTGGAAGATGGAGA--AGATAAGTTAGCTTGGCTCATGCTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74039329 106 + 122973662 TTGCCAAACAGAAGGAGGTGCAGAAAAGGGGAGTTTTT---AACAACTCTTTAAGGAATGAGAGAAAGATTGGAAGATGGAGA--AGATAAGTTAGCTTGGCTCATGCTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29181460 106 + 172585720 TTGCCAAACAGAAGGAGGTGCAGAAAGGGGGAGTTTTT---AACAACTCTTTAAGGAATGGAAGAAAGATTGGAAGATGGAAA--AGATAAGTTAGCTTGGCTCATGCGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28871350 106 - 170955103 TTGCCAAACAGAAGGAGGTGCAGAAAGGGGGAGTTTTT---AACAACTCTTTAAGGAATGGAAGAAAGATTGGAAGATGGAAA--AGATAAGTTAGCTTGGCTCATGCGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1841269 106 -   2996164 TTGCCAAACAGAAGGAGGTGCAGAAAGGGGGAGTTTTT---AACAACTCTTTAAGGAATGGAAGAAAGATTGGAAGATGGAAA--AGATAAGTTAGCTTGGCTCATGCGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1738157 106 -   2157725 TTGCCAAACAGAAGGAGGTGCAGAAAGGGGGAGTTTTT---AACAACTCTTTAAGGAATAGGAGAAAGATTGGAAGATGGAGA--AGATAACTTAGCTTGGCTCATGCGAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28191408 106 -  71996105 TTGCCAAACAGAAGGAGGTGCAGAAAGGGGGAGTTTTT---AACAACTCTTTAAGGAATGGGAGAAAGATTGGAAGATGGAAA--AGATAAGTTAGCTTGGCTCATGCGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1844478 106 +   2316924 TTGCCAAACAGAAGGAGGTGCAGAAAGGGGGAGTTTTT---AACAACTCTTTAAGGAATAGGAGAAAGATTGGAAGATGGAGA--AGATAACTTAGCTTGGCTCATGCGAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1721140 106 -   3067355 TTGCCAAACAGAAGGAGGTGCAGAAAGGGGGAGTTTTT---AACAACTCTTTAAGGAATGGGAGAAAGATTGGAAGATGGAAA--AGATAAGTTAGCTTGGCTCATGGGAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            138051 101 -    375362 -----AAATAGAAGGAGGTGCAGAAAAAGGGAAGTTCT---AACAACTCTTTTAGAAATAGGAGAGAGACTGGGAGGTGGAGA--AGGTGTGTTAGCTTGGCTCATGCTAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      141761 101 -    373274 -----AAACAGAAGGAGGTGCAGAAAATGGGAGGTTCT---AACAACTCTTTTAGAAATAGGAGAAAGACTGGGAGGTGGAGA--AGGTGAGTTAGCTTGGCTCATGCTAA
i cebCap1.NW_016108108v1   C 0 I 221
s aotNan1.NW_018494050v1      105196 106 -    285216 TTGCCAAACACAAGGAGGTGCAGAAAACGGAAGGTTTT---ATCAACTCTTTTAGGAGTGGGAGAAAGACTGGAAGATAGAGA--AGATGAGTTAGTTGGGGTCATGTGAA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480721 111 -   2232465 TTACCAAACAGAATGAGGTGTAAAAATGGGGAAGTTTTTTGATCAGCTCTTTTAGGAATAGAAGGAAGATTGGAAAATAGAAAACAAATGAGCTAGCTCAGCTCATCTTAA
i otoGar3.GL873742         I 50 C 0
e calJac3.chr4             171319124 9000 - 171630274 I

a score=1346234.000000
s hg38.chr6_GL000254v2_alt     24932 176 +   4827813 ATTCGGTGTATCTGTGGGGCACA-C-TGTGAGGATGTTACATGGAGAACTCAGGCAATTGA----CTCTCCAGCCTGGGGTTTGTGAGC-ATTAGTAGTAGTAGACA-T----ATTGCATAGAGGGTGGATAAAGACTAAAAAGGGTCCTTTTAGATTTGGGAATTACAAACCTATTCACGATATTTG
s panTro5.chr6              29001947 180 + 175400573 ATTCGGTGTATCTGTGGGGCACA-C-TGTGAGGATGTTACATGGAGAACTCAGGCAATTGACTCTCTCTCCAGCCTGGGATTTGTGAGC-ATTAGTAGTAGTAGACA-T----ATTGCATGGAGAGTGGATAAAGACTAAAAAGGGTCCTTTTAGATTTGGGAATTACAAACCTATTCATGATATTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29245584 180 + 173848474 ATTCGGTGTATCTGTGGGGCACA-C-TGTGAGGATGTTACATGGAGAACTCAGGCAATTGACTCTCTCTCCAGCCTGGGATTTGTGAGC-ATTAGTAGTAGTAGACA-T----ATTGCATGGAGAGTGGATAAAGACTAAAAAGGGTCCTTTTAGATTTGGGAATTACAAACCTATTCATGATATTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036458 180 +   6154872 AGTCGGTGTATCTGTGGGGCACA-C-TGTGAGGATGTTACATGGAGAACTCGGGCAATTGACTCTCTCTCCAGCCTGGGATTTGTGAGC-ATTAGTAGTAGTAGACA-T----ATTGCATGGAGGGTGGATAAAGACTAAAAAGGGTCCTTTTAGATTTGGGAATTACAAACCTATTCATGATATTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74039435 182 + 122973662 ATTCAGTACATCTGTGGAGCACA-C-TGTGAGGATGTTACACGGAGAACTCAGGCAATTGA--CTGTCTCCGGCCTGGGATTTGTGAGC-ATTAATAGTAGTAGACA-TATTGATTGCATGGAGGGTGGATAAAGACTAAAAACGGTCCTTTTAGATTTGGGAATTACAAACCTATTCATGATATTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29181566 181 + 172585720 ATTCAGTATATCTTTGGGGCGCA-C-TGTGAGGATGTTACACGGAGAACTCAGGCAATTGACTCTGTCTCCAGCCTGGGATTTGCGAGC-ATTAGTAGCAGTAGGCATC----CACCCATGGAGGGTGGATAAAGACTAAAAAGGGTCCTTTTAGATTTGGGAATTACAAACCTATTCATTATATTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28871456 181 - 170955103 ATTCAGTATATCTGTGGGGCGCA-C-TGTGAGGATGTTACACGGAGAACTCAGGCAATTGACTCTGTCTCCAGCCTGGGATTTGCGAGC-ATTAGTAGCAGTAGGCATC----CACCCATGGAGGGTGGATAAAGACTAAAAAGGGTCCTTTTAGATTTGGGAATTACAAACCTATTCATTATATTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1841375 181 -   2996164 ATTCAGTATATCTGTGGGGCGCA-C-TGTGAGGATGTTACACGGAGGACTCAGGCAATTGACTTTGTCTCCAGCCTGGGATTTGCGAGC-ATTAGTAGCAGTAGGCATC----CACCCATGGAGGGTGGATAAAGACTAAAAAGGGTCCTTTTAGATTTGGGAATTACAAACCTATTCATTATATTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1738263 180 -   2157725 ATTCAGTATATCTGTGGGGCGCA-T-TGTGAGGATGTCACACGGAGAACTCAGGCAATTGACTCTGTCTCCAGCCTGGGATTTGTGAGC-ATTAGTAGCAGTAGGCA-C----ATTGCATGGAGGGTGGATAAAGACTAAAAAGAGTCCTTTTAGATTTGGGAATTACCAACCTATTCATGATATTTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28191514 181 -  71996105 ATTCAGTATATCTGTGGGGCGCA-C-TGTGAGGATGTTACACGGAGAACTCAGGCAATTGACTCTGTCTCCAGCCTGGGATTTGCGAGC-ATTAGTAGCAGTAGGCATC----CACCCATGGAGGGTGGATAAAGACTAAAAAGGGTCCTTTTAGATTTGGGAATTACAAACCTATTGATGATATTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1844584 180 +   2316924 ATTCAGTATATCTGTGGGGCGCA-T-TGTGAGGATGTCACACGGAGAACTCAGGCAATTGACTCTGTCTCCAGCCTGGGATTTGTGAGC-ATTAGTAGCAGTAGGCA-C----ATTGCATGGAGGGTGGATAAAGGCTAAAAAGGGTCCTTTTAGATTTGGGAATTACAAACCTATTCATGATATTTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1721246 181 -   3067355 ATTCAGTATATCTGTGGGGCGTA-C-TGTGAGGATGTTACACGGAGAACTCAGGCAATTGACTCTGTCTCCAGCCTGGGATTTGCGAGC-ATTAGTAGCAGTAGGCATC----CACCCATGGAGGGTGGATAAAGACTAAAAAGGGTCCTTTTAGATTTGGGAATTACAAACCTATTCATGATATTTG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            138152 173 -    375362 ATACACAG----TGTGTAGCAC----CGTGAGGATGCTACACAGAGGTCTCAGGCAATGGACTCTGTCTCCAGCCTGGGACTTGTGAGT-ATTAGTAGCAGCAGACA-C----GTTGCATGGAG-ATGGATAAAGACGAAAAAGTGTCCTTTTAGATGTGACAATGACAAATCTATTCATGATATTTG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      105302 180 -    285216 ATTTAGAATATCTGTGGGGCACA-CTTGTGAAGACGCTACACAGAGATCTCAGGCAACTGACTCTGTCTCCAGCCTGGGACTTGTGAGT-ATTAGTAATAGTGGACA-C----ATTGCATGGAG-GTGGATAAAGACTAAAAAGTGTCCTTTTAGATTTGGGAATTACAAACTTGTTCATGATATTTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480832 175 -   2232465 ATTCAGTGTATCTGTGGGACAGAGT-TGTGAAGATGTTACACAGCCAACTCAGGCAATTAA-------TTGATCTAGGGATTTGTGGGTAATCATTAGGCATACATG-T----GGAAAGTGGAAAGTGGACAAAGGCCAAAAAGTATGCTTTGAGATTTGGGGATTACAAACCTATTTGTTTTATTTG
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      141862 221 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I

a score=8281.000000
s hg38.chr6_GL000254v2_alt     25108 1 +   4827813 T
s panTro5.chr6              29002127 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29245764 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036638 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74039617 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29181747 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28871637 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1841556 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 I 3440
s cerAty1.NW_012001495v1     1738443 1 -   2157725 T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28191695 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1844764 1 +   2316924 T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1721427 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            138325 1 -    375362 T
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      105482 1 -    285216 T
i aotNan1.NW_018494050v1   C 0 I 57
e otoGar3.GL873742           1481007 0 -   2232465 C
e cebCap1.NW_016108108v1      141862 221 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I

a score=21060.000000
s hg38.chr6_GL000254v2_alt     25109 10 +   4827813 Ttaaaag-------aaa
s panTro5.chr6              29002128 11 + 175400573 TTAAAAG------AAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29245765  9 + 173848474 TTaaag--------aaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036639 10 +   6154872 Ttaaaag-------aaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74039618 17 + 122973662 TAaaaaataataataat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29181748  8 + 172585720 --aaaaa-------aaa
i rheMac8.chr4             C 0 I 123
s macFas5.chr4              28871638  8 - 170955103 --AAAAA-------AAA
i macFas5.chr4             C 0 I 82
s cerAty1.NW_012001495v1     1738444 10 -   2157725 aaaaaaa-------aaa
i cerAty1.NW_012001495v1   C 0 I 24
s chlSab2.chr17             28191696 10 -  71996105 aaaaaaa-------aaa
i chlSab2.chr17            C 0 I 21
s manLeu1.NW_012104165v1     1844765 10 +   2316924 AAAAAAA-------AAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1721428 10 -   3067355 AAAaaag-------aaa
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            138326 10 -    375362 aaaaaaa-------aaa
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1481007  0 -   2232465 C
e aotNan1.NW_018494050v1      105483 57 -    285216 I
e cebCap1.NW_016108108v1      141862 221 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I
e macNem1.NW_012011356v1     1841557 3440 -   2996164 I

a score=20328.000000
s hg38.chr6_GL000254v2_alt     25119 4 +   4827813 aaaa
s panTro5.chr6              29002139 4 + 175400573 AAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29245774 4 + 173848474 aaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036649 4 +   6154872 aaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74039635 4 + 122973662 aata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29181879 4 + 172585720 aaaA
i rheMac8.chr4             I 123 C 0
s macFas5.chr4              28871728 4 - 170955103 aaaA
i macFas5.chr4             I 82 C 0
s cerAty1.NW_012001495v1     1738478 4 -   2157725 aaaa
i cerAty1.NW_012001495v1   I 24 C 0
s chlSab2.chr17             28191727 4 -  71996105 aaaa
i chlSab2.chr17            I 21 C 0
s manLeu1.NW_012104165v1     1844775 4 +   2316924 AAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1721438 4 -   3067355 gaaa
i colAng1.NW_012115566v1   C 0 I 520
s saiBol1.JH378348            138336 4 -    375362 aaaa
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1481007 0 -   2232465 C
e aotNan1.NW_018494050v1      105483 57 -    285216 I
e cebCap1.NW_016108108v1      141862 221 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I
e macNem1.NW_012011356v1     1841557 3440 -   2996164 I

a score=1080262.000000
s hg38.chr6_GL000254v2_alt     25123 303 +   4827813 agccgggtgtggtggctcacgcctgtaatcccagcactttgggaggccaa----ggcgggtggatcacctgaggttgcaagttcgagaccaggctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggtgcattcctgtaatcccagcttctcgggaggctgaggcaggagaattgcttgaacctaggaggtggaggttgcagtgagtgagatcatgccattgctctccagcctgggcaacaagagtgaaactctctctca---------aat-------aataataataata-ataa
s panTro5.chr6              29002143 312 + 175400573 Agccaggtgtggtggctcacgcctgtaatcccagcactttgggaggccaa----ggcgggtggatcaccagaggtctcaagttcgagaccaggctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggtgcacacctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagtgagatcatgccattgctctccagcctgggcaacaagagtgaaactctctctccaaaaataataat-------aataataataata-ataa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29245778 306 + 173848474 agccaggtgtggtggctcacgcctgtaatcccagcactttgggaggccaa----ggcgggtggatcaccagaggtctcaagttcgagaccaggctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggtgcacacctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagtgagatcatgccattgctctccagcctgggcaacaagagtgaaactctctctccaaa------aat-------aataataataata-ataa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036653 306 +   6154872 agccgggtgtggtggctcacgcctgtaatcccagcactttgggaggccaa----ggcgggtggatcacctgaggttgcaagttcgagaccaggctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggtgcactcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagtgagatcatgccattgctctccagcctgggcaacaagagtgaaactctctctcaaaa------aat-------aataataataata-ataa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74039639 314 + 122973662 agccgggtatggtggctcacgcctgtaatcccagtactttgggaggccaa----ggcgggtggatcacctgaggtcaagagttcgagaccaggctgcccagcatggtgaaaccctgtcagtactaaaaatacaaaaattagctgggcgtggtggtgcacacctgtaatcccagttactccggaggctgaggcaggagaatcgcttgaagctgggaggcagaggttgcagtgagcaagatgatgccattgcactccagcctgggcaacaagagtgaaactctctcaaataa------aataaaataaaataaaaataatagataa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29181883 301 + 172585720 Agccggaagtggtggctcactcctgtaattccagcactttgggaggtcaa----ggtgggcagatcacctgaggttgtaagttcaagatcagtctgaccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggtgcacacctgtaatcccagcaactcgggaggctgaagcaagagaattgcttgaacctgggaggcggaggttgcggtgagcgagatcatgccattgcactccagcctggacaacaagagtgaaactccatctcaaaa------taa-------ataaataa------ataa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28871732 301 - 170955103 Agccggaagtggtggctcactcctgtaattccagcactttgggaggtcaa----ggtgggcagatcacctgaggttgtaagttcaagatcagtctgaccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggtgcacacctgtaatcccagctactcgggaggctgaagcaagagaattgcttgaacctgggaggcggaggttgcggtgagcgagatcatgccattgcactccagcctgggcaacaagagtgaaactccatctcaaaa------taa-------ataaataa------ataa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1738482 305 -   2157725 ggccaggggtggtggctcacgcctgtaattccagcaatttgggaggtcaaggtgggtgggcggatcacctgaggttgtaagttcaagatcagtctgaccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggtgcacacctgtaatcccagctactcaggaggctgaaacaagagaattgcttgaacctggaaggcgggggttgcagtgagcgagatcatgccgttgcactccagcctgggcaacaagagtgaaactccatctcaaaa------taa-------ataaataa------ataa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28191731 305 -  71996105 agccgggggtggtggctccctcctgtaattacagcactttgggaggtcaa----ggtgggcggatcacctgaggttgtaagttcaagatcagtctgatcaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggtacacacctgtaatcccagctactcaggaggctgaagcaagagaattacttgaacctgggaggcggaggttgcagtgagcgagatcatgccattgcactctagcctgggaaacaagagtgaaactccatctcaaaa------taa-------ataaataa--atacataa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1844779 301 +   2316924 ggccgggggtggtggctcacgcctgtaattccagcaatttgggaggtcaa----ggtgggcggatcacctgaggttgtaagttcaagatcagtctgaccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggtgcacacctgtaatcccagctactcaggaggctgaagcaagagaattgcttgaacctgggaggcgggggttgcagtgagcgagattatgccattgcactccagcctgggcaacaagagtgaaactccatctcaaaa------taa-------ataaataa------ataa
i manLeu1.NW_012104165v1   C 0 C 0
e saiBol1.JH378348            138340   0 -    375362 C
e otoGar3.GL873742           1481007   0 -   2232465 C
e aotNan1.NW_018494050v1      105483  57 -    285216 I
e cebCap1.NW_016108108v1      141862 221 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I
e colAng1.NW_012115566v1     1721442 520 -   3067355 I
e macNem1.NW_012011356v1     1841557 3440 -   2996164 I

a score=25945.000000
s hg38.chr6_GL000254v2_alt     25426 6 +   4827813 taaagt
s panTro5.chr6              29002455 6 + 175400573 taaagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29246084 6 + 173848474 taaagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036959 6 +   6154872 taaagt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74039953 6 + 122973662 taaagt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29182184 6 + 172585720 taaagt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28872033 6 - 170955103 taaagt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1738787 6 -   2157725 taaagt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28192036 6 -  71996105 taaagt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1845080 6 +   2316924 taaagt
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1481007 6 -   2232465 TAGGGA
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            138340 0 -    375362 C
e aotNan1.NW_018494050v1      105483 57 -    285216 I
e cebCap1.NW_016108108v1      141862 221 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I
e colAng1.NW_012115566v1     1721442 520 -   3067355 I
e macNem1.NW_012011356v1     1841557 3440 -   2996164 I

a score=29519.000000
s hg38.chr6_GL000254v2_alt     25432 10 +   4827813 aaaaaaaaAT-
s panTro5.chr6              29002461  9 + 175400573 -aaaaaaaaT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29246090  7 + 173848474 -aaaaaaa---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036965  9 +   6154872 -aaaaaaaaA-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74039959  8 + 122973662 -aaaaaaaa--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29182190  9 + 172585720 -aaaaaaaAA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28872039  9 - 170955103 -aaaaaaaaa-
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1738793  9 -   2157725 -aaaaaaaaa-
i cerAty1.NW_012001495v1   C 0 I 5
s chlSab2.chr17             28192042  9 -  71996105 -aaaaaaaaa-
i chlSab2.chr17            C 0 I 9
s manLeu1.NW_012104165v1     1845086  9 +   2316924 -aaaaaaaaa-
i manLeu1.NW_012104165v1   C 0 I 2
s saiBol1.JH378348            138340  9 -    375362 -aaaaaaaaa-
i saiBol1.JH378348         C 0 I 1
s otoGar3.GL873742           1481013 10 -   2232465 -ACAAATAAAT
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      105483 57 -    285216 I
e cebCap1.NW_016108108v1      141862 221 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I
e colAng1.NW_012115566v1     1721442 520 -   3067355 I
e macNem1.NW_012011356v1     1841557 3440 -   2996164 I

a score=218912.000000
s hg38.chr6_GL000254v2_alt     25442 51 +   4827813 TTTTTTTAAAGTTTGCTCCTCTAT-GTTCTTGAACCCTGGTATTTATTATTA
s panTro5.chr6              29002470 51 + 175400573 TTTTTTTAAAGTTTGCTCCTCTAT-GTTCTTGAACCCTGGTATTTATCATTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29246097 51 + 173848474 tTTTTTTAAAGTTTGCTCCTCTAT-GTTCTTGAACCCTGGTATTTATCATTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5036974 50 +   6154872 TTTTTTT-AAGTTTGCTCCTCTAT-GTTCTTGAACCCTGGTATTTATCATTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74039967 51 + 122973662 tTTTTAAAAAGTTTGCTCCTCAAA-ATTCTTGAACCCTGGTATTTATCGTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29182199 50 + 172585720 -TTTTTTTAAGTTGGCTCCTCTGT-GTTCTTGAATCCTGGTATTTATCATTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28872048 50 - 170955103 -aaATTTTAAGTTGGCTCCTCTGT-GTTCTTGAATCCTGGTATTTATCATTA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1738807 51 -   2157725 TTTTTTTTAAGTTGGCTCCTCTGT-GTTCTTGAATCCTGGTATTTATCATTA
i cerAty1.NW_012001495v1   I 5 C 0
s chlSab2.chr17             28192060 51 -  71996105 TTTTTTAAAAATTGGCTCCTCTGT-GTTCTTGAATCCTGGTATTTATCATTA
i chlSab2.chr17            I 9 C 0
s manLeu1.NW_012104165v1     1845097 51 +   2316924 TTTTTTTTAAGTTGGCTCCTCTGT-GTTCTTGAATCCTGGTATTTATCATTA
i manLeu1.NW_012104165v1   I 2 C 0
s colAng1.NW_012115566v1     1721962 51 -   3067355 TTTTTTTTAAGTTGGCTCCTCTGT-GTTCTTGAATCCTGGTATTTATCATTA
i colAng1.NW_012115566v1   I 520 C 0
s saiBol1.JH378348            138350 34 -    375362 --------TAGTTTGTTCCTACGCAGTTCTTGAATGCTGCTG----------
i saiBol1.JH378348         I 1 C 0
s otoGar3.GL873742           1481023 34 -   2232465 ------------TTGCTCCTAGGC-AAATTTGAACCCTGGCAATTAT-----
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      105483 57 -    285216 I
e cebCap1.NW_016108108v1      141862 221 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I
e macNem1.NW_012011356v1     1841557 3440 -   2996164 I

a score=102408.000000
s hg38.chr6_GL000254v2_alt     25493 16 +   4827813 TTTATCATGATTAGGG
s panTro5.chr6              29002521 16 + 175400573 TTTATCATGATTAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29246148 16 + 173848474 TTTATCATGATTAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5037024 16 +   6154872 TTTATCATGATTAGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74040018 16 + 122973662 TTTATCATGATTAGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29182249 16 + 172585720 TTTTCCATGATTAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28872098 16 - 170955103 TTTTCCATGATTAAGA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1738858 16 -   2157725 TTTACCATGATTAAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28192111 16 -  71996105 TTTACCATGATTAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1845148 16 +   2316924 TTTACCATGATTAAGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1722013 16 -   3067355 TTTACCATGATTAAGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            138384 16 -    375362 TTTATCATGAGTAGGA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      142083 16 -    373274 TTTATCATGATTAGGA
i cebCap1.NW_016108108v1   I 221 C 0
s otoGar3.GL873742           1481057 11 -   2232465 -----CATAATTAAGA
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      105483 57 -    285216 I
e calJac3.chr4             171319124 9000 - 171630274 I
e macNem1.NW_012011356v1     1841557 3440 -   2996164 I

a score=3729410.000000
s hg38.chr6_GL000254v2_alt     25509 512 +   4827813 CTGTGTTCTTTGAACTACATAAGAAGATGAGAAGAAAATCCATTTCCTGACACCAAATTTCTAGTGACTGTTAACTCTTTCTCATTCTGATTTACTCATATATGAGCC-TTTGCCAACACTCATGAAATAACATTGATCCCTTGTAGAACTGGCAGAAAACAGCAGGTTATATGGCAGAC--TTGTCTTTTCGGTTGGCTGATGGAATTTCTAG------AACAAAAATAGGAAGCACTGAATGCTAGGTTTCACTGAATAAGAAA-CAAGAGAAGTGTTACACACAAAACTA------------gtgtttgtgtgtgtgtttgac--tgtc----tgtgtgtg------------CATGTAAATGCTAGGGA-GATAATCTTAGCTCTTTGATGCTGCAGAAGTAATATTAGGACAATTTGCAGAAACACTCCTTCATCATTATGTCATGTTGCACCCAGAGAAACCTGGATGTCTACTGGATTCTTGGGAATTCATCATAATATGAAGGTCTGCTTTTTTGTTTGCCTCTTGAAAAGGAGAGAATTTTAAA-
s panTro5.chr6              29002537 524 + 175400573 CTGTGTTCTTTGAAATACATAAGAAGATGAGAAGAAAATCCATTTCCTGACACCAAATTTCTAGTGACTGTTAACTCTTTCTCATTCTGATTTACCTATATATGAGCC-TTTGCCAACACTCATGAAATAACATTGATCTCTTGTAGAACTGGCAGAAAACAGCAGGTTATATGGCAGAC--TTGTCTTTTCGGTTGGCTGATGGAATTTCTAG------AATAAAAATAGGAAGCACTGAATGCTAGGTTTCACTGAATAAGAGA-CAAGAGAAGTGTTACACACAAAACTAgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTGAC--TGTC----TGTGTGTG------------CATGTAAATGCTAGGGA-GATTATCTTAGCTCTTTGATGCTGTAGAAGTAATATTAGGACAATTTGCAGAAACACTCCTTCATCATTATGTCATGTTACACCCAGAGAAACCTGGATGTCTACTGGATTCTTGGGAATTCATCATAATATGAAGGTCTGCTTTTTTGTTTGCCTCTTGAAAAGGAGAGAATTTTAAA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29246164 520 + 173848474 CTGTGTTCTTTGAAATACATAAGAAGATGAGAAGAAAATCCATTTCCTGACACCAAATTTCTAGTGACTGTTAACTCTTTCTCATTCTGATTTACCTATATATGAGCC-TTTGCCAACACTCATGAAATAACATTGATCTCTTTTAGAACTGGCAGAAAACAGCAGGTTATATGGCAGAC--TTGTCTTTTCGGTTGGCTGATGGAATTTCTAG------AATAAAAATAGGAAGCACTGAATGCTAGGTTTCACTGAATAAGAGA-CAAGAGAAGTGTTACACACAAAACTA----gtgtgtgtgtgtgtgtgtgtgtgtttgac--tgtc----tgtgtgtg------------CATGTAAACGCTAGGGA-GATTATCTTAGCTCTTTGATGCTGTAGAAGTAATATTAGGACAATTTGCAGAAACACTCCTTCATCATTATGTCATGTTACACCCAGAGAAACCTGGATGTCTACTGGATTCTTGGGAATTCATCATAATATGAAGGTCTGCTTTTTTGTTTGCCTCTTGAAAAGGAGAGAATTTTAAA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5037040 511 +   6154872 CTGTGTTCTTTGAACTACATAAGAAGATGAGAAGAAAATCCATTTCCTGACACCAAATTTCTAGTGACTGTTAACTCTTTCTCATTCTGATTTACCCATATATGAGCC-TTTGCCAACACTCATGAAACAACATTGATCCCTTGTAGAACTGGCAGAAAACAGCAGGTTATATGGCAGAC--TTGTCTTTTCGGTTGGCTGATGGAATTTCTAG------AATAAAAATAGGAAGCACTGAATGCTAGGTTTCACTGAATAAGAGA-CAAGAGAAGTGTTACACACAAAACTA------------gtgtgtgtgtgtgtgtttgac--tgtc----tgtgtgtg------------CATGTAAATGCTGGGGA-GATTATCTTAGCTCTTTGATGCTGCAGAAGTAATATCAGGACAATTTGCAGAAACGCTCCTTCATCATTATGTCATGTTGCACCCAGAGAAACCTGGATGTCTACTGGATTCTTGGGAATTCATCATAATATGAAAGTCTGC-TTTTTATTTGCCTCTTGAAAAGGAGAGAATTTTAAA-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74040034 514 + 122973662 CTGTGTTCTTCAAACTACATAAGAAGATGAGAAGAAAATCCATTTCCTGACACTAAATTTCTAGTGGCTGTTAACTCTTTCTCATTCTGATTTACCCATATGTGAGCC-TTTGCCAACATTCATAAAATAACACTGATCCCTTGTAGAACTGGCAGAAAATAGCAGGTTATATGGCAGAC--TTGTGTTTTCGGTTGGCTGATGGAATTTCTAG------AATAAAAATAGAAAGCACCGAATGCTAGGTTTCACCGAATAAGAGA-CAAGAGAAGTGTTACACACAAAATTG----------gtgtgtgcgtgtgtgtgtttgtc--tgac----tgtgtgCG------------CATGTAAATGCTAGGGA-TATTATTTTGGCTCTTCGATGCTGTAGAAGTAATATTAGGACAGTTTGCAGAAACACTCCTTCATCATTATGTCATGTTGCACCCAGAGAAAGCTGGATGTCTACTGGATTCTTGGGAATTCATCATAATATGAAGGTCTGCCTTTTTGTTTGCCTCTTGAAAAGGAGAGAATTTTAAA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29182265 510 + 172585720 CTATGTTCTTTGAACTACATAAGAAGATGAGAAGAAAATCCATTTCCTGACACCAAATTTCTAGTGACTGTTAACTCTTTCTCATTCTGATTTACCCATATATGAGCC-TTTACCAACATTCATAAAA-------------TTTTAGAATTGGCAGAAAATAGCAGGTTATGTGGCAGAC--TTGTCCTTTCAGTTGGTTGATGGAATTTCTAGAATAAAAATAAAAATAGAAAGCACTGAATGCTAGGTTTCACTGAATAGGAGA-CAAGAAAAGTGTTACACACTGAACTG------gtgtgtatgcgtgtgtgtttgtctgcc--tgtc----tgtatgtG------------CATGTAAATGCTAGGGA-GATTATCTTGGCTCTTTGATGCTGTAGAAGTAATATTAGGACAGTTTGTAGAAACACTCCTTCATTATTATGTCATGTTGCACCCAGAGAAACC-GGATGTCTACTGGATTCTTGGGAATTCATCATAATATGAAGGTCTGCTTTTCTGTTTGCCTCTTGAAAAGAGGAGAATTTTAAA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28872114 510 - 170955103 CTATGTTCTTTGAACTACATAAGAAGATGAGAAGAAAATCCATTTCCTGACACCAAATTTCTAGTGACTGTTAACTCTCTCTCATTCTGATTTACCCATATATGAGCC-TTTACCAACATTCATAAAA-------------TTTTAGAATTGGCAGAAAATAGCAGGTTATGTGGCAGAC--TTGTCCTTTCAGTTGGTTGATGGAATTTCTAGAATAAAAATAAAAATAGGAAGCACTGAATGCTATGTTTCACTGAATAGGAGA-CAAGAAAAGTGTTACACACTGAACTG------gtgtgtatgcgtgtgtgtttgtctgcc--tgtc----tgtatgtg------------catgtAAATGCTAGGGA-GATTATCTTGGCTCTTTGATGCTGTAGAAGTAATATTAGGACAGTTTGTAGAAACACTCCTTCATTATTATGTCATGTTGCACCCAGAGAAACC-AGATGTCTACTGGATTCTTGGGAATTCATCATAATATGAAGGTCTGCTTTTCTGTTTGCCTCTTGAAAAGAGGAGAATTTTAAA-
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1738874 508 -   2157725 CTATGTTCTCTGAACTACATAAGAAGATGAGAAGAAAATCCATTTCCTGACACCAAATTTCTAGTGACTGTTAACTCTTTCTCATTCTGATTTATCCATATATGAGCC-TTTACCAACATTCATCAAA-------------TTTTAGAATTGGCAGAAAATAGCAGGTTATGTGGCAGAC--TTGCCCTTTCAGTTGGCTGATGGAATTTCTAGAATAAAAATAAAAATAGGAAGCACTGAATGCTAGGTTTCACTGAATAGGAGA-CAAGAAAAGTGTTACACACCGAACTG------GTGTGTAT--GGGTGTGTTTGTCTGCC--TGTC----TGTATGTG------------CATGTAAATGCTAGGGA-GATTATCTTGGCTCTTTGATGCTGTGGAAGTAATATTAGGACAGTTTGCAGAAACACTCCTTCATCATTATGTCATGTTGCACTCAGAGAAACC-GGATGTCTACTGAGTTCTTGGGAATTCATCATAATATGAAGGTCTGCTTTTTTGTTTGCCTCTTGAAAAGAGGAGAATTTTAAA-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28192127 509 -  71996105 CTATGTTCTTTGAACTACATAAGAAGATGAGAAG-AAATCCATTTCCTGACACCAAATTTCTAGTGACTGTTAACTCTTTCTCATTCTGATTTACCCATATATGAGCC-TTTACCAACATTCATAAAA-------------TTTTAGAATTGGCAGAAAATAGCAGGTTATGTGGCAGAC--TTGTCCTTTCAGTTGGCTGATGGAATTTCTAGAATAAAAATAAAAATAGGAAGCACTGAATGCTAGGTTTCACTGAATAGGAGA-CAAGAAAAGTGTTACACACCGAACTG------gtgtgtatgcgtgtgtgtttgtctgcc--tgtc----tgtatgtg------------catgtAAATGCTAGGGA-GATTATCCTGGCTCTTTGATGCTGTAGAAGTAATATTAGGACAGTTTGTAGAAACACTCCTTCATTATTATGTCATGTTGCACCCAGAGAAGCT-GGATGTCTACTGGATTCTTGGGAATTCATCATAATATGAAGGTCTGCTTTTTTGTTTGCCTCTTGAAAAGAGGAGAATTTTAAA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1845164 507 +   2316924 CTATGTTCTCTGAACTACATAAGAAGATGAGAAGAAAATCCATTTCCTGACACCAAATTTCTAGTGACTGTTAACTCTTTCTCATTCTGATTTACCCATATATGAGCC-TTTACCAACATTCATCAAA-------------TTTTAGAATTGGCAGAAAATAGCAGGTTATGTGGCAGAC--TTGCCCTTTCAGTTGGCTGATGGAATTTCCAGAATAAAAATAAAAATAAGAAGCACTGAATGCTAGGTTTCACTGAATA-GAGA-CAAGAAAAGTGTTACACACCGAACTG------GTGTGTAT--GGGTGTGTTTGTCTGCC--TGTC----TGTATGTG------------CATGTAAATGCTAGGGA-GATTATCTTGGCTCTTTGATGCTGTGGAAGTAATATTAGGACAGTTTGCAGAAACACTCCTTCATCATTATGTCATGTTGCACTCAGAGAAACC-GGATGTCTACTGGATTCTTGGGAATTCATCATAATATGAAGGTCTGCTTTTTTGTTTGCCTCTTGAAAAGAGGAGAATTTTAAA-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1722029 512 -   3067355 CTATGTTCTTTGAACTACATAAGAAGATGAGAAGAAAATCCATTTCCTGACACCAAATTTCTAGTGACTGTTAACTCTTTCTCATTCTGATTTACCCATATATGAGCCTTTTTCCAACATTCATAAAA-------------TTTTAGAATTGGCAGAAAATAGCAGGTTATATGGCAGAC--TTGTCCTTTCAGTTGGCTGATGGAATTTCTAGAATAAAAATAAAAATAGGAAGCACTGAATGCTAGGTTTCACTGAATAGGAGA-CAAGAAAAGTGTTACACACTGAACTG------gtgtgtatgcatgtgtgtttgtctgcc--tgtc----tgtatgtg------------catgtAAATGCTAGGGA-GATTATCTTGGCTCTTTGATGCTGTAGAAGTAATATTAGGACAGTTTGCAGAAACACTCCTTCATCTTTATGTCATGTTGCATCCAGAGAAACCTGGATGTCTACTGGATTCTTGGGAATTCATCATAATATGAAGGTCTGCTTTTTTGTTTGCCTCTTGAAAAGAGGATAATTTTAAA-
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            138400 502 -    375362 CTGTGTTCTTTGAACTACATAAGAAGATGAGAAGAAAACCC-TTTCCTGACACCAAATTTCTAAAGACTATCAACTGTTTCTCATCCTGTTTTACCCACATATGAGCC-TTTCCCAACGTTCTTAAAATA--AGTGATCCCTTTTAAAATTGGCAGAAAATAGCAGGTTATATGGCAGAC--TTGTCCTTTTGGTTGGCTGACGGAATTTCTGG------AATAAAAACAGGAAACACTGAGTGCTAGGTTTCACTGAATAAGAGA-TTAGAGAAGCATTGCACACAAAACTG------GTGTGTATGCATGCGTG-TTGTCTGCC--TATC--TGTGTGTGTG------------CCTGTAAATGCTAGGGA-GATTATCTTGGCTCTTTGATGCTGTAAAAGCAATATTAGGACAGTTTGCAGAAACA---CTTCATTATTACGTCGTGTTGCACCCAGAGAAACCTGG-----------ATTCTTGGGAATTCATCACAACATGAAGGTCTGCTTTTTTGTTTGCCTCATGAAAAGGGGATAATTATAAA-
i saiBol1.JH378348         C 0 I 293
s cebCap1.NW_016108108v1      142099 455 -    373274 CTGTGTTCTTTGAACTACATAAGCAGATGAGAAGAAAACCC-TTTCCTGACACCAAATTTCTAATGACTATTAACTCATTCTCATCCTGATTTACCCACATATGAGCC-TTTCCCGACATTCTTAAAATAACAATGATCCCTTTTAAAATTGGCAG--------------------------------------------------------------------AAAACAGGAAACACTGATTGTTAGGTTTCACTGAATAAGAGA-CTAGAGAAGCGTTGCTCACAAAACTG------GTGTGTATGCTTGCGTG-TTGTCTGCC--TGTC--TCTGTGTGTG------------CCTGTAAATGCTAGGGA-GATTATCTTGGCTCTTTGATGCTGTAAAAGCAACATTAGGACAGTTTGCAGAAACA---CTCCATTATTACGTCATGTTGCACCCAGAGAAACCTGGATGTCTGCTGCATTCTTGGGAATTCATCACAACATGAAGGTCTGCTTTTTTGTTTGCCTCATGAAAAGGAGATAATTATAAA-
i cebCap1.NW_016108108v1   C 0 I 1
s aotNan1.NW_018494050v1      105540 514 -    285216 CTGTGTTCTCTGAACTATATAAAAAGATGAGAAGAAAATCCACTTCCCAGCACAACACTTCTAGTGGCTATTAACTCTTTCTCATTCTGTTTTGCCCATATATGAGCC-TTTGCTAATGTTAATAAAATAACATTGATGCCTTTCAAAACTGGCAG---ATTGCAAGTTGTATGGCAGAC--TTGTCC-TTCAGCGGGTTGATGAGATTTCTAG------AATAAAAATAGGAAACACTGAGTGACAGGCTTCCCTGAAGGAGGGA-CTAGAGAAGTGTTACACACAAAATTG------ACGTGTATCCAtgtgtgtttatttgcctgtgtc--tgtgtgtgtg------------catgtAAATGCTGGGGAGGATTATTTGGACTCTTCGATGCTGTAAAA-CAATATTAGGACAGTTTGCAGAAACAGTCCTTCATCTTCATGTCGTGTCACACTCAGAGAAACCTGGCTGTCTATCAGATTCTTGGGAATTCGTAATAA---GAAGGTCTGCTTTTTTGTTTGCCACACAAAAGGGGGA-AATTTTAAA-
i aotNan1.NW_018494050v1   I 57 C 0
s otoGar3.GL873742           1481068 521 -   2232465 CTGGGTTCTTTGAACTACATAAGAAGATTAAAAGAAAATACATTTCTTGGCACCAGATTCCTGGTGGCTACTGACTTTTTCTCATTCTGGTTTGCTCATACGTGAACT-TTTACCACCATTCATAAAATAACATTGATTCCTTTTGAAATTGGCAGAATAT---GAGTTGTGTGACAGACTTTTATCCTTTTAGTTAGCTCATGGGATTTTTAG------AATAAAAATGGGAAAAAGAAAGTG----ATTTCACTGAAGAAAAGATTTAGAGAATCATCACATACAAAACTG------ATGGGTGTGTATGTGTGTTTGCTTGTC--TATCCATGTGCATGTGCTCTCACATGCACACGTAAATGCTGGGGAGGATTATCTTGACCATCTGATGCTGTAAAAGCAGTATTAGGACAGTTTGCAGAAACA---CACCATCATTATGTTGTATTGCACTCAGAGAAACCTGGATATCTATTGGATACTTGGGAATTCATGGCAA------GGTTTTTTTATTT-TTTGCCTCATAAAAATGGGA-ATTTTTAAAA
i otoGar3.GL873742         C 0 C 0
e calJac3.chr4             171319124 9000 - 171630274 I
e macNem1.NW_012011356v1     1841557 3440 -   2996164 I

a score=304264.000000
s hg38.chr6_GL000254v2_alt     26021 40 +   4827813 TAATTAAATATCTGTAGCTCTCTTCTGA----CTAACAACAACA
s panTro5.chr6              29003061 44 + 175400573 TAATTAAATATCTGTAGCTCTCTTCTGACTGTCTAACAACAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29246684 44 + 173848474 TAATTAAATATCTGTAGCTCTCTTCTGACTGTCTAACAACAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5037551 44 +   6154872 TAATTAAATATCTGTAGCTCTCTTCTGACTATCTAACAACAACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74040548 44 + 122973662 TAATCAAATAACTGTAGCTCTCTTCTGACTATCTACCAACAACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29182775 44 + 172585720 TAATTAAATATCTGTAGCTCTCTTCTGACTACCTACAAATAACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28872624 44 - 170955103 TAATTAAATATCTGTAGCTCTCTTCTGACTACCTACAAATAACA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1739382 44 -   2157725 TAATTAAATGTCTGCAGCTCTCTTCTGACTACCTACCAATAACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28192636 44 -  71996105 TAATTAAATATCTGTAGCTCTCTTCTGACTACCTACAAATAACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1845671 44 +   2316924 TAATTAAATGTCTGCAGCTCTCTTCTGACTACCTACCAATAACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1722541 44 -   3067355 TAATTAAATATCTGTAGCTCTCTTCTGACTACCTACAAATGACA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            139195 44 -    375362 AAATTAAATATCTGTAGCTCTCTTCCGACTATCTACCAACAACA
i saiBol1.JH378348         I 293 C 0
s cebCap1.NW_016108108v1      142555 44 -    373274 AAGTTAAATATCTGTAGCTCTCTTCCGACTAGCTACCAACAACA
i cebCap1.NW_016108108v1   I 1 C 0
s aotNan1.NW_018494050v1      106054 44 -    285216 TAATTGAATATCTGTATCTATCTTGACACTATCTACCAACAACA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1481589 26 -   2232465 AAATGAAATATCTGTA------------------AACAACAACA
i otoGar3.GL873742         C 0 I 24
e calJac3.chr4             171319124 9000 - 171630274 I
e macNem1.NW_012011356v1     1841557 3440 -   2996164 I

a score=533243.000000
s hg38.chr6_GL000254v2_alt     26061 78 +   4827813 CGACTGAAACACA-GTTTTTTT-TGTAAAAACTGTGGGATGAGCTTATTTAACACAGAATTCCTCTGAGGAATTAAACAT
s panTro5.chr6              29003105 78 + 175400573 CGACTGAAACACA-TTTTTTTT-TGTAAAAACTGTGGGATGAGCTTATTTAACACAGAATTCCTCTGAGGAATTAAACAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29246728 78 + 173848474 CGACTGAAACACA-TTTTTTTT-TGTAAAAACTGTGGGATGAGCTTATTTAACACAGAATTCCTCTGAGGAATTAAACAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5037595 79 +   6154872 CGACTGAAACACATTTTTTTTT-TGTAAAAACTGTGGGATGAGCTTATTTAACACAGAATTCCTCTGAGGAATTAAACAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74040592 76 + 122973662 CAATTGAAACACA---TTTTTT-TGTAAAAACTGTAGGATGAGCTTATTTAACACAGAATTCCTCTGAGGAATTAAACAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29182819 76 + 172585720 CGATTGAAACACA---TTTTTT-TATAAAAACTGTAGGATGAGCTTATTTAACACAGAATTCTTCTGAGGAATTAAACAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28872668 76 - 170955103 CGATTGAAACACA---TTTTTT-AATAAAAACTGTAGGATGAGCTTATTTAACACAGAATTCTTCTGAGGAATTAAACAT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1739426 75 -   2157725 CGATTGAAACACA---TTTTTT-TGTAAAAACTGTAGGATAAGCTTATTT-ACACAGAATTCCTCTGAGGAATTAAACAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28192680 75 -  71996105 TGATTGAAACACA----TTTTT-TGTAAAAACTGTAGGATGAGCTTATTTAACACAGAATTCTTCTGAGGAATTAAACAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1845715 75 +   2316924 CGATTGAAACACA---TTTTTT-TGTAAAAACTGTAGGATGAGCTTATTT-ACACAGAATTCCTCTGAGGAATTAAACAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1722585 76 -   3067355 CGATTGAAACACA---TTTTTT-TGTAAAAACTGTAGGATGAGCTTATTTAACACAGAATTCCTCTGAGGAATTACACAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            139239 76 -    375362 TGACTGAAACACG---TTTTTG-TGTAAAAACTGTAGGATGAGCTCATTTAACACAGAATTCCTCTAAAGAATGAAACAT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      142599 76 -    373274 TGACTGAAACACA---TTTTTG-TGTAAAAACTTTAGGATGAGCTCATTTAACACAGAATTCCCCTAAAGAATGAAACAT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      106098 77 -    285216 TGATTGAAACACA---TTTTTTCTGTATAATTTGTAGGATGAGCTCATTTAACACAGCATTCTTCTGAGGAATTAAAGAT
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1481615 24 -   2232465 I
e calJac3.chr4             171319124 9000 - 171630274 I
e macNem1.NW_012011356v1     1841557 3440 -   2996164 I

a score=1510282.000000
s hg38.chr6_GL000254v2_alt     26139 177 +   4827813 TTAATCCTGAAGACAGAACAC-CCTCA-TGTGATACATACTCAATTCAGAAAACCT-AAAAATATATA-AAGTATCtgtttaaacctgcactgtccaat-atggttaccattagccacactggctattgaatgcttgaaattgcc-cagtccaagttaaga-gtgttgtaagtgtaaaatacat
s panTro5.chr6              29003183 177 + 175400573 TTAATTCTGAAGACAGAACAC-CCTCA-TGTGATACATACTCAATTCAGAAAACCT-AAAAATATATA-AAGTATCTGTCTAAACctgcactgtccaat-atggttaccattagccacactggctattgaatgcttgaaattgcc-cagtccaagttaaga-gtgttgtaagtgtaaaatatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29246806 177 + 173848474 TTAATTCTGAAGACAGAACAC-CCTCA-TGTGATATATACTCAATTCAGAAAACCT-AAAAATATATA-AAGTATCTGTCTAAACctgcactgtccaat-atggttaccattagccacactggctattgaatgcttgaaattgcc-cagtccaagttaaga-gtgttgtaagtgtaaaatatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5037674 177 +   6154872 TTAATTCTGAAGACAGAACAC-CCTCA-TGTGATACATACTCAATTCAGAAAACCT-AAAAATATATA-AAGTATCtgtttaaacctgcactgtccaat-atggttaccattagccacactggctgttgaatgcttgcaattgcc-cagtccaagttaaga-gtgtcgtaagtgtaaaatatat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74040668 177 + 122973662 TTAATTCTGAAGACAGAACAC-CCTCA-TGTGATACATACTCAATTCAGAAAACCT-AAAAATATATA-AAATATCTGCTTAAACctgcactgtccaat-aaggttaccattagccacattggctattgaatgcttgaaatttcc-cagtccaagttaaga-gtgttgtaagtgtaaaatatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29182895 178 + 172585720 TTAATTCTGAAGACAGAACAC-CCTCA-TGTGATACATACTCAATTCAGAAAACCT-AAAAATATATA-AAGTATCtgtttaaacctgcactgtcccat-atggttaccattagccacattggctattgaacgcttgaaattgcc-cagtctaagttaagatgtgttgtaagtgtaaaatatat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28872744 178 - 170955103 TTAATTCTGAAGACAGAACAC-CCTCA-TGTGATACATACTCAATTCAGAAAACCT-AAAAATATATA-AAGTATCtgtttaaacctgcactgtcccat-atggttaccattagccacattggctattgaacgcttgaaattgcc-cagtctaagttaagatgtgttgtaagtgtaaaatatat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1844997 180 -   2996164 TTAATTCTGAAGACAGAACACACCTCATTGTGATACATACTCAATTCAGAAAACCTAAAAAATATATAGAAGTATCTGTT--AACTtgcactgtcccataatggtta-cattagccacattggctatgaacagctggaaattgccacagttctaattaagatgtgttgtaagt-taaaatatat
i macNem1.NW_012011356v1   I 3440 I 1
s cerAty1.NW_012001495v1     1739501 178 -   2157725 TTAATTCTGAAGACAGAACAC-CCTCA-TGTGATACATACTCAATTCAGAAAACCT-AAAAATATATA-AAGTATCtgtttaaacctgcactgtcccat-atggttaccattagccacattggctattgaatgcttgaaattgtc-cagtctaagttaagatgtgttgtaagtgtaaaatatat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28192755 178 -  71996105 TTAATTCTGAAGACAGAACAC-CCTCA-TGTGATACATACTCAATTCGGAAAACCT-AAAAATATATA-AAGTATCtgtttaaacctgcactgtcccat-atggttaccattagccacattgtctattgaatgcttgaaattgcc-caatctaagttaagatgtgttgtaagtgtaaaatatat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1845790 178 +   2316924 TTAATTCTGAAGACAGAACAC-CCTCA-TGTGATACATACTCAATTCAGAAAACCT-AAAAATATATA-AAGTATCtgtttacacctgcactgtcccat-atggttaccattagccacattggctattgaatgcttgaaattgtc-cagtctaagttaagatgtgttgtaagtgtaaaatatat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1722661 178 -   3067355 TTAATTCTGAAGACAGAACAC-CCTCA-TGTGATACATACTCAATTCAGAAAACCT-AAAAATATATA-AAGTATCtgtttaaacctgcactgtcccat-atggttaccattagccacattggctattgaatgcttgaaattgcc-cagtctaagttaagatgtgttgtaagtgtaaaatatat
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            139315 178 -    375362 TTAATTCTGAAGACAGAACAC-CCTCA-TGTGATACATACTCAATTCAGAAAACCT-AAAAATATATA-AAGTATCtgtttaaacctgccctgtccaac-atggttaccgtcagccacattggctacggaatgcttgaaattgct-cagtccaagttaagatgtgttgtaaatgtaaaacatat
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      142675 174 -    373274 TTAATTCTGAAGACAGAACAC-CCTCA-TGTG----ATACTCAATTCAGAAAACCT-AAAAACATGTA-AAGTATCtgtttaaacctgccctgtccaac-atggttaccatcagccacactggctactgaatgcttgaaattgcc-cagtccaagttaagatgtgctgtaagtgtaaaatatat
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      106175 177 -    285216 TTAATTTTGAAGACAGAGCAC-CCTCA-TGTCATACATACTCAATTTCAAAAGCCT-AAAAATATATA-ACGTATCtgtttaaacctgcactgtccagt-atggttaccattag-cacattggctattgaatgcttgaaatttcc-cagtccaagttaagatgtgttgtaagtgtgaaatatat
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1481615  24 -   2232465 I
e calJac3.chr4             171319124 9000 - 171630274 I

a score=8281.000000
s hg38.chr6_GL000254v2_alt     26316 1 +   4827813 a
s panTro5.chr6              29003360 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29246983 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5037851 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74040845 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29183073 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28872922 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1845178 1 -   2996164 a
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012001495v1     1739679 1 -   2157725 a
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28192933 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1845968 1 +   2316924 a
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1722839 1 -   3067355 a
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      142849 1 -    373274 a
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      106352 1 -    285216 a
i aotNan1.NW_018494050v1   C 0 I 1391
e saiBol1.JH378348            139493 0 -    375362 C
e otoGar3.GL873742           1481615 24 -   2232465 I
e calJac3.chr4             171319124 9000 - 171630274 I

a score=37368.000000
s hg38.chr6_GL000254v2_alt     26317 6 +   4827813 tcaga-t
s panTro5.chr6              29003361 6 + 175400573 tcaga-t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29246984 6 + 173848474 tcaga-t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5037852 6 +   6154872 tcaga-t
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74040846 6 + 122973662 tcaga-t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29183074 6 + 172585720 tcaga-t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28872923 6 - 170955103 tcaga-t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1845179 7 -   2996164 tcagatt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1739680 6 -   2157725 tcaga-t
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28192934 6 -  71996105 tcaga-t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1845969 6 +   2316924 tcaga-t
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1722840 6 -   3067355 tcaga-t
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      142850 6 -    373274 ccaga-t
i cebCap1.NW_016108108v1   C 0 I 28
e saiBol1.JH378348            139493 0 -    375362 C
e otoGar3.GL873742           1481615 24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e calJac3.chr4             171319124 9000 - 171630274 I

a score=746583.000000
s hg38.chr6_GL000254v2_alt     26323 139 +   4827813 ttggccaggcacagtagcttgcgtctgtaatcccagtactttgggtggctgaggtgggtggatcacaaggtcaggagttc--gagacc-agcctgaccaacatggtgaaaccccatctctactaaaaata-caaaaattagcc
s panTro5.chr6              29003367 139 + 175400573 GTggccaggcacagtagctcgcgtctgtaatcccagtactttgggtggctgaggtgggtgaatcataaggtcaggagttc--gagacc-agcctgaccaacatggtgaaaccccgtctctagtaaaaata-caaaaattagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29246990 139 + 173848474 gtggccaggcacagtagctcgcgtctgtaatcccagtactttgggtggctgagttgggtggatcacaaggtcaggagttc--gagacc-agcctgaccaacatggtgaaaccccgtctctagtaaaaata-caaaaattagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5037858 139 +   6154872 ttggccaggcacagtagctcgcgtctgtaatcccagtactttgggtggctgaggtgggtggatcacaaggtcaggagttc--gagacc-agcctgaccaacatggtgaaaccccatctctactaaaaata-caaaaattagcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74040852 139 + 122973662 ttggccaggcacagtggcttacatctgtaatcccagtactttgggaggccgaggtgagtggatcacaaggtcaggagttt--gagacc-aatctgaccaacatggtgaaaccccgtctctgctaaaaata-caaaaattggcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29183080 139 + 172585720 ttggccaggcacagtggctggcatctgtaatcctactactttgggaggccaaggtgggtggatcacaaggtcaggagttc--gagacc-agcctgaccaacatggtgaaaccccatctctactaaaaata-caaaaattagcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28872929 139 - 170955103 ttggccaggcacagtggctggcatctgtaatcccagtactttgggaggccaaggtgggtggatcacaaggtcaggagttc--gagacc-agcctgaccaacatggtgaaaccccatctctactaaaaata-caaaaattagcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1845186 138 -   2996164 ttggccaggcacagtggctggcatctgtagacccagtacttt--gaggccagggtgggtggatcacaa-gtcaggagtttcggagaccgagcctgacc-acatggtgaaa-cccatctctactgaaaatatcaaaaattagcc
i macNem1.NW_012011356v1   C 0 I 33
s cerAty1.NW_012001495v1     1739686 139 -   2157725 ttggccaggcacagtggctggcgtctgtaatcccagtactttgggaggccaaggtgggtggatcacaaggtcaggagttc--gagacc-agcctgaccaacatggtaaaaccccatctctactaaaaatg-caaaaattagcc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28192940 139 -  71996105 ttggccaggcacagtggctggcgtctgtaatcccagtactttgggaggccaaggtgggtggatcacaaggtcaggagttc--aagacc-aacctgaccaacatggtgaaaccccatctctactaaaagta-caaaaattagcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1845975 139 +   2316924 ttggccaggcacagtggctggcgtctgtaatcccagtactttgggaggccaaggtgggtggatcacaaggtcaggagttc--gagacc-agcctgaccaacatggtaaaaccccatctctactaaaaatg-caaaaattagcc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1722846 139 -   3067355 ttggtcaggcacagtggctagcgcctgtaatcccagtactttgggaagccaaggtgggtggatcacaaggtcaggagttc--gagact-ggcctgaccaacatggtgaaacctcatctctactaaaaata-caaaacttagcc
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            139493   0 -    375362 C
e otoGar3.GL873742           1481615  24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e cebCap1.NW_016108108v1      142856  28 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I

a score=152932.000000
s hg38.chr6_GL000254v2_alt     26462 34 +   4827813 tggcttggtgacacacacctgaaatcccagctac
s panTro5.chr6              29003506 34 + 175400573 tggcatggtgacacacacctgaaatcccagctac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29247129 34 + 173848474 tggcatggtgacacacacctgaaatcccagctac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5037997 34 +   6154872 tggcgtagtgacgcacacctgaaatcccagctac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74040991 34 + 122973662 tggcttggtgacacacacctgaaatcccagctac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29183219 34 + 172585720 ggacgtggtggcacacacctgaaatcccagctac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28873068 34 - 170955103 agacgtggtggcacacacctgaaatcccagctac
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1739825 34 -   2157725 ggacgtggtggcacacacctgaaatcccagctac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28193079 34 -  71996105 ggacgttgtggcacacacctgaaatcccagctcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1846114 34 +   2316924 ggacgtggtggcacacacctgaaatcccagctac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1722985 34 -   3067355 ggacgtggtggcacacacctgaaatcccagctac
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            139493  0 -    375362 C
e otoGar3.GL873742           1481615 24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e cebCap1.NW_016108108v1      142856 28 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I
e macNem1.NW_012011356v1     1845324 33 -   2996164 I

a score=470719.000000
s hg38.chr6_GL000254v2_alt     26496 91 +   4827813 ttgggaggctgaggcaggagaattgcttgaacctgggaggctgaggttgcagtgagccgacatcgggccactgc-actccagcctgggtgac
s panTro5.chr6              29003540 91 + 175400573 ttgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagtgagccgacatcgcgccactgc-actccagcctgggtgac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29247163 91 + 173848474 ttgggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgcagtgagccgacatcgcgccactgc-actccagcctgggtgac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5038031 91 +   6154872 ttgggaggctgaggcaggagaattgcttgaagctgggaggcagaggttgcagtgagccgagatcacgccactgc-actccagcctgggtgac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74041025 91 + 122973662 tcaggaggctgaggcaggagaactgcttgaacctgggaggtggatgttgcagtgaaccgagattgcaccactgc-actccagcctgggtgac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29183253 91 + 172585720 tcgggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcagtgagccgagattgtgccactgc-actccagcctgggtgac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28873102 91 - 170955103 tcgggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcagtgagccgagattgtgccactgc-actctagcctgggtgac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1845357 90 -   2996164 tcgggaggctgaggcaggagaattgcttgaacaccagaggtggagg-tgcag-gagccgagatttgtccactgcgactccagcctgggtggt
i macNem1.NW_012011356v1   I 33 C 0
s cerAty1.NW_012001495v1     1739859 91 -   2157725 tcgggaggttgaagcaggagaattgcttgaacccaggaggtggaggttgcagtgagccgagattgcacaactgc-actccagcctcagtgac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28193113 91 -  71996105 tcgggaagctgaggcaggagaattgcttgaacccaggaggtggaggttgcagtgagccgagattgtgcaactgc-actccagcctgggtgac
i chlSab2.chr17            C 0 I 100
s manLeu1.NW_012104165v1     1846148 91 +   2316924 tcgggaggctgaagcaggagaattgcttgaacccaggaggtggaggttgcagtgagccgagattgcacaactgc-actccagcctcagtgac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1723019 91 -   3067355 tagggaggctgaggcaggagaattacttgaacccaggaggtggagcttgcagtgagccgagattatgccactgc-actccagcctgggtgac
i colAng1.NW_012115566v1   C 0 I 31
e saiBol1.JH378348            139493  0 -    375362 C
e otoGar3.GL873742           1481615 24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e cebCap1.NW_016108108v1      142856 28 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I

a score=9631.000000
s hg38.chr6_GL000254v2_alt     26587 24 +   4827813 agagcgagaatccttcg-caaaaaa------
s panTro5.chr6              29003631 18 + 175400573 agagcgagaatctttct-c------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29247254 19 + 173848474 agagcgagaatctttctac------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5038122 18 +   6154872 agagtgagaatccttct-c------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74041116 18 + 122973662 agagcgagactccttct-c------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29183344 14 + 172585720 ----------tccttct-c------aaaaaa
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              28873193 14 - 170955103 ----------TCCTTCT-C------aaaaaa
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     1845447 14 -   2996164 ----------cctttct-c------aaaaaa
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012001495v1     1739950 14 -   2157725 ----------tccttct-c------aaaaaa
i cerAty1.NW_012001495v1   C 0 I 2
s manLeu1.NW_012104165v1     1846239  8 +   2316924 ----------tccttct-c------------
i manLeu1.NW_012104165v1   C 0 C 0
e saiBol1.JH378348            139493  0 -    375362 C
e otoGar3.GL873742           1481615 24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e cebCap1.NW_016108108v1      142856 28 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I
e colAng1.NW_012115566v1     1723110 31 -   3067355 I
e chlSab2.chr17             28193204 100 -  71996105 I

a score=40420.000000
s hg38.chr6_GL000254v2_alt     26611 15 +   4827813 aaaaaaaaaaaaaaa-
s panTro5.chr6              29003649 14 + 175400573 -aaaaaaaaaagaaa-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29247273 14 + 173848474 -aaaaaaaaaagaaa-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5038140 14 +   6154872 -aaaaagaaaaaaaa-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74041134 14 + 122973662 -aaaaaaaaaaaaaa-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29183359 15 + 172585720 -aaaaaaaaaaaaaaa
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              28873208 15 - 170955103 -aaaaaaaaaaaaaaa
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     1845462 15 -   2996164 -aaaaaaaaaatatat
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012001495v1     1739966 15 -   2157725 -aataaataaataaat
i cerAty1.NW_012001495v1   I 2 C 0
s chlSab2.chr17             28193304 15 -  71996105 -aaAAAAAAAAAAAAA
i chlSab2.chr17            I 100 C 0
s manLeu1.NW_012104165v1     1846247 15 +   2316924 -aaaaaataaataaat
i manLeu1.NW_012104165v1   C 0 C 0
e saiBol1.JH378348            139493  0 -    375362 C
e otoGar3.GL873742           1481615 24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e cebCap1.NW_016108108v1      142856 28 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I
e colAng1.NW_012115566v1     1723110 31 -   3067355 I

a score=117203.000000
s hg38.chr6_GL000254v2_alt     26626 38 +   4827813 aa---------atatatata--------ta-tgtaaatatatatatacatacacac
s panTro5.chr6              29003663 38 + 175400573 aa---------atatatata--------ta-tatataaatatatatacatacacac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29247287 43 + 173848474 aa----tatatatatatata--------ta-tatataaatatatatacatacacac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5038154 47 +   6154872 aaaatatatatatatatata--------ta-tatgtaaatatatatacatacacac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74041148 47 + 122973662 aaaaaaaaaaaaaatatata--------ta-tatatatatatatatgtatatatac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29183374 40 + 172585720 -------aaatatatatata--------ta-tatatatatatgtttgtatatatac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28873223 40 - 170955103 -------aaatatatatata--------tg-tatatatatatgtttgtatatatac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1845477 48 -   2996164 -------atatatatatatatattatattg-tatatataaatgtttgtatatatac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1739981 46 -   2157725 -------aaataaataaataaataaa--ta-aataaatatatgtttgtatatatac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28193319 38 -  71996105 -------AAatacatata----------tg-tatatatatatgtttgtatacatac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1846262 38 +   2316924 -------aaataaataaa----------ta-aataaatatatgtttgtatatacac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1723141 41 -   3067355 -------aaatatatatata--------tgttatatatatatgtttgtatatatac
i colAng1.NW_012115566v1   I 31 C 0
e saiBol1.JH378348            139493  0 -    375362 C
e otoGar3.GL873742           1481615 24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e cebCap1.NW_016108108v1      142856 28 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I

a score=216923.000000
s hg38.chr6_GL000254v2_alt     26664 42 +   4827813 accaga--tttcaaagatgtgtaatactattttttaaatataaa
s panTro5.chr6              29003701 42 + 175400573 accaga--tttcaaagatgtgtaatactattttttaaatataaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29247330 42 + 173848474 accaga--tttcaaagatgtgtaatactatttcttaaatataaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5038201 42 +   6154872 accaga--tttcaaagatgtgtaatactattttttaaataaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74041195 42 + 122973662 accaga--tttcaaagatgtgcaatactagtttttaaatataaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29183414 41 + 172585720 accaga--tttcaaagatgcataatacta-tttttaaatataaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28873263 41 - 170955103 accaga--tttcaaagatgcataatacta-tttttaaatataaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1845525 43 -   2996164 accagatttttcaaagatgcataatacta-ttttttaaataaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1740027 41 -   2157725 accaga--tttcaaagacgtgtagtacta-tttttaaaaatgaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28193357 41 -  71996105 accaga--tttcaaagatgcataatacta-tttttaaatataaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1846300 41 +   2316924 accaga--tttcaaagatgtgtaatacta-tttttaaaaatgaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1723182 41 -   3067355 accaga--tttcaaagatgtgtaatacta-tttttaaatataaa
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            139493 38 -    375362 accaga--tttcaacgatg--taatatcatttttaaaatata--
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1481615 24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e cebCap1.NW_016108108v1      142856 28 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I

a score=1124917.000000
s hg38.chr6_GL000254v2_alt     26706 156 +   4827813 atatctcactaataattttataattgatagcttcttaaaataagtttttggatatacaaagtgatttaaatatattattgaaactggacataaaagatagcaacaacaaacactggggactatggggaggggtgggagggagggcagaaagatttg
s panTro5.chr6              29003743 156 + 175400573 atatctcactaataattttataattgatagcttcttaaaataagtttttggatatacaaagtgatttaaatatattattgaaactggacataaaagatagcaacaacaaacactggagactatggggaggggtgggagggagggcagaaaggtttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29247372 156 + 173848474 atatctcactaataattttataattgatagcttcttaaaataagtttttggatatacaaagtgatttaaatatattattgaaactggacataaaagatagcaacaacaaacactggagactatggggaggggtgggagggagggcagaaaggtttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5038243 155 +   6154872 atatctcactaatacttttataattggtagcttcttaaaataag-ttttggatatacaaagtgatttcaatatattattgaaactgaacataaaagatagcaacaacaaacactggggactatggggaggggtgggagggagggcagaaaggtttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74041237 156 + 122973662 atatctcactaataattttataatagatagcttcttaaaataagtttttggatatacaaagtgatttaaatatattattgaaactggacataaaagatagcaacaacaaacactggggactatggggaggggtgggagagagggcagaaaggtttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29183455 156 + 172585720 atatctcactaataattttaaaattgatagcgtcttaaaataagtttttggatatacaaagtgatttaaatatattattgaaactgggcataaaagatagcaacaacaaacactggggactatggggaggggtgggagggaggacagaaaggcttg
i rheMac8.chr4             C 0 I 335
s macFas5.chr4              28873304 156 - 170955103 atatctcactaataattttaaaattgatagcatcttaaaataagtttttggatatacaaagtgatttaaatatattattgaaactgggcataaaagatagcaacaacaaacactggggactatggggaggggtgggagggaggacagaaaggcttg
i macFas5.chr4             C 0 I 520
s macNem1.NW_012011356v1     1845568 156 -   2996164 atatctcactaataatttttaaattgatagcatcttaaaataagtttttggatatacaaagtgatttaaatatattattgaaactgggcataaaagatagcaacaacaaacactggggactatggggaggggtgggagggaggacagaaaggcttg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1740068 156 -   2157725 atatctcactaataattttaaaattgatagcgttttaaaataagtttttggatatacaaagtgatttaaatatattattgaaactgggcataaaagatagcaacaacaaacactggggactatgggaaggggtgggagggaggacagaaaggcttg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28193398 156 -  71996105 atatctcactaataattttaaaattgatagcgttttaaaataagtttttggatatacaaagtgatttaaatatattattgaaactgggcataaaagatagtaacaacaaacactggggactatggggaggggtgggagggaggacagaaaggcttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1846341 156 +   2316924 atatctcactaataattttaaaattgatagcgttttaaaataagtttttggatatacaaagtgatttaaatatattattgaaactgggcataaaagatagcaacaacaaacactggggactatggggaggggtgggagggaggacagaaaggcttg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1723223 156 -   3067355 atatgtcactaataattttaaaattgatagcgttttaaaacaagtttttggatatataaagtgacttaaatatattattgaaactgaGCATAaaagatagcaacaacaaacactggggactatggggaggggtgggagggaggacagaaaggcttg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            139531 151 -    375362 ---tctcattaataatttgataattcatagcttctaaaaatagtgttttggctatacaaagttatttaaatatattattgaaactggacaaaaaagatggcaacaacaaacagtgtgagtaccgg--aggggagggagggcgggcggcgaggctgg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      142884 152 -    373274 atatctcattaataatttgataattgatagcttctaaaaatagtgttttgtctatacaaagttatttaaatatattattgaaactggacaaaaaagatggcaacaacaaacagtggggactcc----ctggaggggagggcgggcggaaaggcttg
i cebCap1.NW_016108108v1   I 28 C 0
e otoGar3.GL873742           1481615  24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e calJac3.chr4             171319124 9000 - 171630274 I

a score=884965.000000
s hg38.chr6_GL000254v2_alt     26862 129 +   4827813 aaaagctacctcttgggtactatgcctactacctgggtgatgggatcaattgcactcaaaacctcatgcaatttacccagcatcatgtagtatacccatgtaacaaacctgcacgtgtacccccaaatc
s panTro5.chr6              29003899 129 + 175400573 aaaagctacctcttgggtactatgcctactacctgggtgatgggatcaattgcactcaaaacctcatgcaatttacccagcatcatgtagtataaccatgtaacaaacctgcacgtgtacccccaaatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29247528 129 + 173848474 aaaagctacctcttgggtactatgcctactacctgggtgatgggatcaattgcactcaaaacctcatgcaatttacccagcatcatgtagtataaccatgtaacaaacctgcacgtgtacccccaaatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5038398 129 +   6154872 aaaagctacctcttgggtactatgcctactacttggatgatgggatcaattgcactcaaaacctcatgcaatttacccagcatcatgtagtatacccatgtaacaaacctgcacgtgtacccccaaatc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74041393 128 + 122973662 aaaagctacctcttgggtactatgcctaccacctgggtgatgggatcaattgcactcaaaacctcatgcaatttacccagcatcatgtagtatacccatgtaacaaaccttcacgtgtaccccc-aatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29183946 122 + 172585720 aaaagctacctcttgggtactat-------acctgggtgatgcgatcaattgccctcaaaacctcatgcaatttacccagcatcgtgtcgtatacccatgtaacaaaccttcacatgtacccccaaatc
i rheMac8.chr4             I 335 C 0
s macFas5.chr4              28873980 122 - 170955103 aaaaGctacctcttgggtactat-------acctgggtgatgcgatcaattgccctcaaaacctcatgcaatttacccagcatcgtgtcgtatacccatgtaacaaaccttcacatgtacccccaaatc
i macFas5.chr4             I 520 C 0
s macNem1.NW_012011356v1     1845724 122 -   2996164 aaaagctacctcttgggtactat-------acctgggtgatgcgatcaattgccctcaaaacctcatgcaatttacccagcatcgtgtcgtatacccatgtaacaaaccttcacatgtatccccaaatc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1740224 120 -   2157725 aaaagctacctcttgggtactgt-------acctgggtgatgggatcaattgccctcaaaacctcatgcgatttacccagcatc--atcatatacccatgtaacaaaccttcacatgtacccccaaatc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28193554 122 -  71996105 aaaagctacctcttgggtactat-------acctgggtgatgggatcaattgccctcaaaacctcatgcaatttacccagcatcgtgtcatatacccatgtaacaaaccttcacatgtacccccaaatc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1846497 120 +   2316924 aaaagctacctcttgggtactgt-------acctgggtgatgggatcaattgccctcaaaacctcatgcgatttacccagcatc--atcatatacccatgtaacaaaccttcacatgtacccccaaatc
i manLeu1.NW_012104165v1   C 0 I 56121
s colAng1.NW_012115566v1     1723379 118 -   3067355 aaaagctacctcttgggtactat-------acctgggtgatgggatcaattgccttcaaaacctcacacaatttacccagcatcatgtcatatacccatgt----aaccttcacatgtgcccccaaatc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            139682 129 -    375362 agaagctacctcttgggtactacgctcgctacctgcgtggtgggatcaatcgcactcaaaacttaatgcaatttacccggcatcatgcagtatacccatgtaacgaaccttcacaggtacccccgaatc
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      143036 129 -    373274 agaagctacctctcgggtactacgctcactacctgggtggtgggatcaattgcactcaaaacttaatgcaatttacctggcatcatgcagtatacccatgtaacaaaccttcacaggtacccccaaatc
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1481615  24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e calJac3.chr4             171319124 9000 - 171630274 I

a score=257833.000000
s hg38.chr6_GL000254v2_alt     26991 48 +   4827813 taaaataaaaattgaaattacataaaaatataaatattgac------tt----ttttt-
s panTro5.chr6              29004028 47 + 175400573 taaaataaaaattgaaattacataaaaatataaatattgac-------t----ttttt-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29247657 47 + 173848474 taaaataaaaattgaaattacataaaaatataaatattgac-------t----ttttt-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5038527 48 +   6154872 taaaataaaaattgaaattacataaaaatataaatattgac------tt----ttttt-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74041521 54 + 122973662 taaaataaaatttgaaattacataaaaatataaacattgacagtttatt----ttttt-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29184068 48 + 172585720 aaaaataaaagttgaaaTTATATAAAAATATAAATATTAAC------TG----TTTTT-
i rheMac8.chr4             C 0 I 1620
s macFas5.chr4              28874102 48 - 170955103 aaaaataaaagttgaaCTTATATAAAAATATAAATATTAAC------TG----TTTTT-
i macFas5.chr4             C 0 I 4
s macNem1.NW_012011356v1     1845846 48 -   2996164 aaaaataaaagttgaaCTTATATAAAAATATAAATATTAAC------TG----TTTTT-
i macNem1.NW_012011356v1   C 0 I 4
s cerAty1.NW_012001495v1     1740344 48 -   2157725 aaaaataaaagttgaaaTTATATAAAAATATAAATATTAAC------TG----TTTTT-
i cerAty1.NW_012001495v1   C 0 I 5
s chlSab2.chr17             28193676 48 -  71996105 aaaaataaaagttgaaGTTATATAAAAATATAAATATTAAC------TG----TTTTT-
i chlSab2.chr17            C 0 I 4
s colAng1.NW_012115566v1     1723497 48 -   3067355 aaaaataaaagttgaaaTTATATAAAAATATAAATATTAAC------TG----TTTTT-
i colAng1.NW_012115566v1   C 0 I 4
s saiBol1.JH378348            139811 49 -    375362 taaagtaaaagttgaaaTTACATAGACATACAGATATTGAC------TG----TTTTTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      143165 53 -    373274 taaaataaaagttgaaaTTATATAAAAATACAGATATTGAC------TGTTTATTTTTT
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1481615 24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e calJac3.chr4             171319124 9000 - 171630274 I
e manLeu1.NW_012104165v1     1846617 56121 +   2316924 I

a score=307836.000000
s hg38.chr6_GL000254v2_alt     27039 48 +   4827813 aatgcaactactgcaaaaggtaacactacaaaatggctgtcatttaaa
s panTro5.chr6              29004075 48 + 175400573 aatgcaactactgcaaaaggtaacactacaaaatggctgtcatttaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29247704 48 + 173848474 aatgcaactactgcaaaaggtaacactacaaaatggctgtcatttaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5038575 48 +   6154872 aatgcaactactgcaaaaggtaacactacaaaatggctgtcatttaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74041575 48 + 122973662 aatgcaactactgcaacaggtaacactacaaaatggctgtcatttatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29185736 48 + 172585720 AATGCGACTACTGCAAAAGGTAACACTACAAAATGGCTGTCATTTATG
i rheMac8.chr4             I 1620 C 0
s macFas5.chr4              28874154 48 - 170955103 AATGCGACTACTGCAAAAGGTAACACTACAAAATGGCTGTCATTTATG
i macFas5.chr4             I 4 C 0
s macNem1.NW_012011356v1     1845898 48 -   2996164 AATGCGACTACTGCAAAAGGTAACACTACAAAATGGCTGTCATTTATG
i macNem1.NW_012011356v1   I 4 C 0
s cerAty1.NW_012001495v1     1740397 48 -   2157725 AATGTGACTACTGCAAAAGGTAACACTACAAAATGGCTGTCATTTATG
i cerAty1.NW_012001495v1   I 5 C 0
s chlSab2.chr17             28193728 48 -  71996105 AATGTGACTACTGCAAAAGGTAACACTACAAAATGGCTGTCATTTATG
i chlSab2.chr17            I 4 C 0
s colAng1.NW_012115566v1     1723549 48 -   3067355 AATGCGACTACTGCAAAAGGTAACACTACAAAATGGCTGTCATTTATG
i colAng1.NW_012115566v1   I 4 C 0
s saiBol1.JH378348            139860 48 -    375362 AATGTGTTTGCTGCCAAAGGTAACACTACAAAATGGCTGTCATTTGTA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      143218 48 -    373274 AATGTGTTTGCTGCCAAAGGTAACACTACACAATGGCTGTCATTTGTG
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1481615 24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e calJac3.chr4             171319124 9000 - 171630274 I
e manLeu1.NW_012104165v1     1846617 56121 +   2316924 I

a score=2407129.000000
s hg38.chr6_GL000254v2_alt     27087 334 +   4827813 acttgtattatctcttgattggacagAATTGTCTAAAGACAATGTTATCCATTTAGGTGCTGTTCTGGGAGAATCCCAGAAGCAGAGAACACGGAGCATGATCTGCCAGTAATTAAGTTTCATGCTGTGAGTGGACTTGACAGAATGCATTTCTATGCATGA-TCTCCTTTGATCTTTACAACAT--CCCATTTTACAAAATCATTATTAACATCATTTTTAAGCCATTGAATGGCAGACAAATCATGCTTGGAATTGCCCTAGGCCTTCCATTTCAACAGAATGTAAAGGAATCTTTACTGCGTTAGGCAC-AAAACATTCAATGTTACTGTTTGTC
s panTro5.chr6              29004123 326 + 175400573 acttgtattatctcttgattggacagAATTGTCTAAAGACAATGTTATCCATTTAGGTGCTGTTCTGGGAGAATCCCAGAGGCAGAGAACATGGAGCATGATCTGCCAGTAATTAAGTTTCATGCTGTGAGTGGACTTGAAAGAATGCATTTCTATGCATGA-TCTCCTTTGATCTTTACAACAT--CCCATTTTACAAAATCATTATTAACATCATTTTTAAGCCATTGAATGGCAGACAAATCATGCTTGGAATTGCCCCAGGCCTTCCATTTCAACAGAATGTAA--------TTACTGCGTTAGGCAC-AAAACATTCAAAGTTACTGTTTGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29247752 326 + 173848474 acttgtattatctcttgattggacagAATTGTCTAAAGACAATGTTATCCATTTAGGTGCTGTTCTGGGAGAATCCCAGAGGCAGAGAACATGGAGCATGATCTGCCAGTAATTAAGTTGCATGCTGTGAGTGGACTTGAAAGAATGCATTTCTATGCATGA-TCTCCTTTGATCTTTACAACAT--CCCATTTTACAAAATCATTATTAACATCATTTTTAAGCCATTGAATGGCAGACAAATCATGCTTGGAATTGCCCCAGGCCTTCCATTTCAACAGAATGTAA--------TTACTGCGTTAGGCAC-AAAACATTCAAAGTTACTGTTTGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5038623 334 +   6154872 acttgtattatctcttgattggacagAATTGTCTAAAGACAATGTTATCCATTTAGGTGCTGTTCTGGGAGAATCCCAGAAGCAGAGAACACGGAGCATGATCTGCCAGTAATTAAGTTTCATGCTGTGAGTGGACTTGACAGAATGCATTTCTATGCATGA-TCTCCTTTGATCTTTACAACAT--CCCATTTTACAAAATCATTATTAACATCATTTTTAAGCCATTAAATGGCAGACAAATCATGCTTGGAATTGCCCTAGGCCTTCCATTTCAACTGAATGTAAAGGAATCTTTACTGCGTTAGGCAC-AAAACATTCAATGTTACTGTTTGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74041623 335 + 122973662 acttgtattatctcttgattggacagAATTGTCTAGAGACAATGTTATCTATTTAGGTGCTGTTCTGGGAGAATCCCAGAGGCAGAGAACATGGAGCATGATCTGCCAGGAATTAAGTCTCATGTCGTGGGTGGACTTGACAGAATGCATTTCTATGCATGA-TCTCCTTTGATCTTTACAACAT--CCCATTTTACAAAATCATTATTAACATCATTTTTAAGCCATTGAATGGCAGACAAATCATGCTTGGAATTGCCCTAGGCCTTCCATTTCAACAGAATGTAAAGGAATCTTTACTGTGGTAGGCACAAAAACATTCAATGTTACTGTTTGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29185784 335 + 172585720 ACTTGTATTATCTCTTGATTGGACAGAATTGTCTAGAGACAATGTTATCTATTTAGGTGCTGTTCTGGGAGAATCCCAGAGGCAGAGAACATGGAGCATGATCTGCCAGTAATTAAGTTTCATGCCGTGAGTGGACTTGACAGAATGCATTTCTATTCATGA-TATCCTTTGATCTTTACAACAT--CCCATTTTACAAAACCATTATTAACCTCATTTTTAAGCCATTGAATGGCAGACAAATCATGCTTGGAATTACCCTAGGCCCTCCATTTCAACAGAATGTAAAGGAATCTTTACTGCGTTAGGCACAAAGACATTCAGTGTTACTGTTTGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28874202 335 - 170955103 ACTTGTATTATCTCTTGATTGGACAGAATTGTCTAGAGACAATGTTATCTATTTAGGTGCTGTTCTGGGAGAATCCCAGAGGCAGAGAACATGGAGCATGATCTGCCAGTAATTAAGTTTCATGCCGTGAGTGGACTTGACAGAATGCATTTCTATTCATGA-TATCCTTTGATCTTTACAACAT--CCCATTTTACAAAACCATTATTAACCTCATTTTTAAGCCATTGAATGGCAGACAAATCATGCTTGGAATTACCCTAGGCCCTCCATTTCAACAGAATGTAAAGGAATCTTTACTGCGTTAGGCACAAAGACATTCAGTGTTACTGTTTGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1845946 335 -   2996164 ACTTGTATTATCTCTTGATTGGACAGAATTGTCTAGAGACAATGTTATCTATTTAGGTGCTGTTCTGGGAGAATCCCAGAGGCAGAGAACATGGAGCATGATCTGCCAGTAATTAAGTTTCATGCCGTGAGTGGACTTGACAGAATGCATTTCTATTCATGA-TATCCTTTGATCTTTACAACAT--CCCATTTTACAAAACCATTATTAACCTCATTTTTAAGCCATTGAATGGCAGACAAATCATGCTTGGAATTACCCTAGGCCCTCCATTTCAACAGAATGTAAAGGAATCTTTACTGCGTTAGGCACAAAGACATTCAGTGTTACTGTTTGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1740445 337 -   2157725 ACTTGTATTATCTCTTGATTGGACAGAATTGTCTAGAGACAATGTTATCTATTTAGGTACTGTTCTGGGAGAATCCCAGAGGCAGAGAACATGGAGCATGATCTGCCAGTAATTAAGTTTCATGCCGTGAGTGGACTTGACAGAATGCATTTCTATTCATGA-TATCCTTTGATCTTTACAACATCACCCGTTTTACAAAACCATTATTAACCTCATTTTTAAGCCATTGAATGGCAGACAAATCATGCTTGGAATTACCCTAGGCCCTCCATTTCAACAGAATGTAAAGGAATCTTTACTGCCTTAGGCACAAAGACATCCAGTGTTACTGTTTGTC
i cerAty1.NW_012001495v1   C 0 I 185
s chlSab2.chr17             28193776 335 -  71996105 ACTCGTATTATCTCTTGATTGTACAGAATTGTCTAGAGATAATGTTATCTATTTAGGTGCTGTTCTGGGAGAATCCCAGAGGCAGAGAACATGGAGCATGATCTGCCAGTAATTAAGTTTCATGCCGTGAGTGGACTTGACAGAATGCATTTCTATTCATGA-TATCCTTTGATCTTTACAACAT--CCCATTTTACAAAACCATTATTAACCTCATTTTTAAGCCATTGAATGGTAGACAAATCATGCTTGGAATTACCCTAGGCCCTCCATTTCAACAGAATGTAAAGGAATCTTTACTGCGTTAGGCACAAAGGCATTCAGTGTTACTGTTTGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1902738 334 +   2316924 ACTTGTATTATCTTTTG-TTGGACAGCATTGTCTAGAGATGATGTTATCTCTTTAAATGTGGTTCTGGGAGATTCCCAGAGCCAGAGAGCATGGAGCATGGTCTCTGAGTAATTAAGTTTCATGCTTCGAGTGTTCTCGACAGAATGCATTTCTATGCATAA-TCTCCTTAGACCTTTACAACAT--CCCATTTTATGTAATTATTATTAGCCGCATTTTTAAGCGATTGAATAGGAGAAAAATCGTGCTGGGAATTACCCTAGAACTTCCATTTCAACAGAATGTAAAGGAATCATTACTGTGTTAGGCAAGAAAACATTCAGTGCTACCATTTGTC
i manLeu1.NW_012104165v1   I 56121 T 47302
s colAng1.NW_012115566v1     1723597 335 -   3067355 ACTTGTGTTATCTCTTGATTGGACAGAATTGTCTAGAGACAATGTTATCTATTTAGGTGCTGTTTTGGGAGAATCCCAGAGACAGAGAACGTGGAGCATGATCTGCCAGTAATTAAGTTTCATGCCCTGAGTGGACTTGACAGAACGCATTTCTATTCATGA-TATTCTTTGATCTTTACAACAT--CCCATTTTACAAAACCATTATTAACCTCATTTTTAAGCCATTGAATGGCAGACAAATCATGCTTGGAATTACCCTAGGCCCTCCATTTCAACAGAATGTAAAGGAATCTTTACTGCGTTAGGCACAAAGACATTCAGTGTTACTGTTTGTC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            139908 333 -    375362 ACTTGTATTCTCTTTTGATGGGACAGCTTTGTCTACAGAGGATGTTACCTATTCAGGTGCTGTTCTGGGAGAATCCCAGAGCCAGAGGACATGGAGCACGGTCTGCCAGTGATTAAGTTTCATGCCAGGAATGGACTTGACAGAATGCGTTTC-ATGCATGATTCTCCTTTGATCTTAACAACAT--CCCATTTTACAAAATCATTATTAATCTCACTTTGAAGCCATTGAATGGGAGACAAATCATGCTTGGAATTACCCTGGGCCTTCCATTTCAACAGAAGGGAAAGAAATCATTAC-GTGTTAGACAGGAAAACATTC-GTGTTATTGTTTGTC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      143266 332 -    373274 ATTTGTATTATATTTTGATGGGACAGCTTTGTCTACAGAGAATGTTATCTATTCAGGTGCTGTTCTGGGACAATCCCAGAGCCAGAGAACATGGAGTACAGTCTGCCAGTAATTAAGTTTCATGCCAGGAATGGACTTGACAGAATGCGTTTC-GTGCATGA-TCTCCTTTGATCTTTACAATAT--CCCATTTTACAAAATCATTATTAGCCTCACTTTGAAGCCATTGAATGGGAGACAAATCATGCTTGGAATTACCCTAGGCCTTCCATTTCAACAGAAGGTAAAGAAATCATTAC-GTGTTAGACAGGAAAACATTC-GTGTTACTGTTTGTC
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1481615  24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e calJac3.chr4             171319124 9000 - 171630274 I

a score=2015402.000000
s hg38.chr6_GL000254v2_alt     27421 280 +   4827813 TAGTCAAATATTTCTTAATGGAGTAAAACACAAGCTTCTGAGTTGAGAAAGCCTCAGTG----AAAGGATAAAGTACC-----------------------------------------TGATTCCCAGTTTCTGTACAGTCAATG------TCCCTAACCCAAGGTTACTTCTCATTTGGTACTAATTTTCCTTTTGCAACTTGCTGCAGTTCTGATAGTGGAGTATTGTAGATTATTGTCTCCTCACAGGGTATGCAGAAGTTAGAGAAAAACAACACTGAAACTGAAGCAGTAATTTGAAAG--A-AAAAAAATCAAAATGAC------------------------------------------------CAAAAAAA
s panTro5.chr6              29004449 286 + 175400573 TAGTCAAATATTTCTTAATGGAGTAAAACACAAGCTTCTGAGTTGAGAAAGCCTCAGTG----AAAGGATAAAGTATC-----------------------------------------TGATTCCCAGTTTCTGTACAGTCAATGTCCCTATCCCTACCCCAAGGTTACTTCTCATTTGGTACTAATTTTCCTTTTGCAACTTGCTGCAGTTCTGATAGTGGAGTATTGTAGATTATTGTCTCCTCACAGGGTATGCAGAAGTTAGAGAAAAACAACACTGAAACTGAAGCAGTAATTTGAAAG--A-AAAAAAACCAAAATGAC------------------------------------------------CAAAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29248078 280 + 173848474 TAGTCAAATATTTCTTAATGGAGTAAAACACAAGCTTCTGAGTTGAGAAAGCCTCAGTG----AAAGGATAAAGTATC-----------------------------------------TGATTCCCAGTTTCTGTACAGTCAATG------TCCCTACCCCAAGGTTACTTCTCATTTGGTACTAATTTTCCTTTTGCAACTTGCTGCAGTTCTGATAGTGGAGTATTGTAGATTATTGTCTCCTCACAGGGTATGCAGAAGTTAGAGAAAAACAACACTGAAACTGAAGCAGTAATTTGAAAG--A-AAAAAAACCAAAATGAC------------------------------------------------CAAAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5038957 280 +   6154872 TAGTCAAATATTTCTTAATGGAGTAAAACACAAGCTTCTGAGTTGAGAAAGCCTCAGTG----AAAGGATAAAGTATC-----------------------------------------TGATTCCCAGTTTCTGTACAGTCAATG------TCCCTACCCCAAGGTTATTTCTCATTTGGTACTAATTTTCCTTTTGCAACTTGCTGCAGTTCTGATAGTGGAGTATTGTAGATTATTGTCTCCTCACAGGGTATGCAGAAGTTAGAGAAAAACAACACTGAAACTGAAGCAGTAATTTGAAAG--A-AAAAAAATCAAAATGAC------------------------------------------------CAAAAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74041958 279 + 122973662 TAGTTAAATATTTCTTAATGGAATAAAACACAAGCTTCTGAGTTGAGAAAGCCTCAGTG----AAAGGATAAAGTATC-----------------------------------------TGATTCCCAGTTTCTGTACAGTCAATG------TCCCTACCCTGACGTTACTTCTCATTTGGTACTAATTTTCCTTTTGCAACTTGCTGCAGTTTTGATGGTGGAGTACTGTAGATTATTGTCTCCTCACAGGGTATGCAGAAGTTAGAGAAAAACAACACTGAAACTGAAGCAGTAATTTGAAAG--A-AAAAAAATCAAAGTGAC------------------------------------------------C-AAAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29186119 296 + 172585720 TAGTCAAGTATTTCTTAATGAAATCAAATACAAACTTCTGAGCTGAGAAAGCCTCAGTGACCTAAAGGATAAAGTATC-----------------------------------------TGATTCCCAGTTTCTGTACAGTCAATG------TCCCTACCCTGAGGTTGCTTCTCATTTGGTACTAATTTTCCTTTTGCAACTTGCTGCAGTTGTAATGGTGGAGAACTGTAGATTATTGTATCCTCACAGGGTATGCAGAAGTTAGGGGAAAATAACACTGAAACTGAAGTAGTAATTTGaaagaaa-aaaaaaatcaaaatgac--------------------------------------aaaaaaaaaaaaaaaaaa
i rheMac8.chr4             C 0 I 2
s macFas5.chr4              28874537 296 - 170955103 TAGTCAAGTATTTCTTAATGAAATCAAATACAAACTTCTGAGCTGAGAAAGCCTCAGTGACCTAAAGGATAAAGTATC-----------------------------------------TGATTCCCAGTTTCTGTACAGTCAATG------TCCCTACCCTGAGGTTGCTTCTCATTTGGTACTAATTTTCCTTTTGCAACTTGCTGCAGTTGTAATGGTGGAGAACTGTAGATTATTGTATCCTCACAGGGTATGCAGAAGTTAGGGAAAAATAACACTGAAACTGAAGCAGTAATTTGaaagaaa-aaaaaaatcaaaatgac--------------------------------------aaaaaaaaaaaaaaaaaa
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1     1846281 334 -   2996164 TAGTCAAGTATTTCTTAATGAAATCAAATACAAACTTCTGAGCTGAGAAAGCCTCAGTGACCTAAAGGATAAAGTATC-----------------------------------------TGATTCCCAGTTTCTGTACAGTCAATG------TCCCTACCCTGAGGTTGCTTCTCATTTGGTACTAATTTTCCTTTTGCAACTTGCTGCAGTTGTAATGGTGGAGAACTGTAGATTATTGTATCCTCACAGGGTATGCAGAAGTTAGGGAAAAATAACACTGAAACTGAAGCAGTAATTTGAAAGAAA-AAAAAAATCAAAATGACaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaa
i macNem1.NW_012011356v1   C 0 I 2
s cerAty1.NW_012001495v1     1740967 287 -   2157725 TAGTCAAGTATTTCTTAATGAAATCAAATACAAACTTCTGAGTTGAGAAAGCCTCAGTTACCTAAAGGATAAAGTATC-----------------------------------------TGATTCCCAGTTTCTGTACAGTCAATG------TCCCTACCCTGAGGTTGCTTCTCATTTGGTACTAATTTTCCTTTTGCAACTTGCTGCAGTTGTAATGGTGGAGAACTGTAGATTATTGTATCCTCACAGGGTATGCAGAAGTTAGGGAAAAATAACACTGAAACTGAAGCAGTAATTTGaaagaaa-aaaaaaatcaaaatgac-----------------------------------------------aaaaaaaaa
i cerAty1.NW_012001495v1   I 185 I 2
s chlSab2.chr17             28194111 284 -  71996105 TAGTCAAGTATTTCTTAATGAAATCAAATACAAACTTCTGAGCTGAGAAAGTCTCAGTGACCTAAAGGATAAAGTATC-----------------------------------------TGATTCCCAGTTTCTGTACAGTCGATG------TCCCTACCCGGAGGTTACTTCTCATTTGGTACTAATTTTCCTTTTGCAACTTGCTGCAGTTGTAATGATGGAGAACTGTAGATTATTGTATCCTCACAGGGTATGCAGAAGTTAGGGAAAAATAACACTGAAATGGAAGCAGTAATTTGAAAG--A-AAAAAAATCAAAATGAC------------------------------------------------CAAAAAAA
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012104165v1     1855770 288 +   2316924 TAGTCAAGTATTTCTTAATGAAATCAAATACAAACTTCTGAGCTGAGAAAGCCTCAGTGACCTAAAGGATAAAGTATC-----------------------------------------TGATTCCCAGTTTCTGTACAGTCAATG------TCCCTACCCTGAGGTTGCTTCTCATTTGGTACTAATTTTCCTTTTGCAACTTGCTGCAGTTGTAATGGTGGAGAACTATAGATTATTGTATCCTCACAGGGTATGCAGAAGTTAGGGAAAAATAACACTGAAACTGAAGCAGTAATTTGaaag-aa-aaaaaaatcaaaatgac---------------------------------------------aaaaaaaaaaa
i manLeu1.NW_012104165v1   T 47302 I 2
s colAng1.NW_012115566v1     1723932 285 -   3067355 TAGTCAAGTATTTCTTAATGAAATCAAATACAAACTTCTGAGCTGAGAAAGCCTCAGTGACCTAAAGGATAAAGTATC-----------------------------------------TGATTCCCAGTTTCTGTACAGTTAATG------TCCCTACCCTGAGATTGCTTCTCATTTGGTACTAATTTTCCTTTTGCAACTTGCTGCAGTTGTAATGGTGGAGAACTGTAGATTATTGTATCCTCACAGGGTATGCAGAAGTTAGGGAAAAATAACACTGAAACTGAAGCTGTAATTTGaaag-aa-aaaaaaatcaaaatgac------------------------------------------------caaaaaaa
i colAng1.NW_012115566v1   C 0 I 52963
s saiBol1.JH378348            140241 284 -    375362 TAGTCAAATATTCCTTAATAAAATACAACACAAGCTTCTGAGTTGAGAAAGCCTCGGTGACCTAAAGGCTAAGGTATC-----------------------------------------GGATTCCCAGTTTCCGTACGGTCCATG------TACCTACGCTGAGGTTGCTTCTCATTTGGTACCAATTTTCCTTTTGCAACTTGATGCAGTTCTGATGTTGGAGTCCTGTAGATTATCGTCTCCTCACAGGGTGTGCAGAAGTTAGGGAAAAACAATACTGAAACTGAAGCAGCAATTTGAAAG--GAAAAAAAATCAAAATGAC------------------------------------------------CAAAAAA-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      143598 324 -    373274 TAGTCAAATATTCCTTAATGAAATAAAGCACAAGCTTCTGAGTTGAGAAAGCCTCGGTGACCTAAAGGATAAGGTATCCTATTCCCAGTTTCTGTACCATCCATGAGGTTGCTTCTCAGTGATTCCCAGTTTCTGTACCATGCATG------TCCCTACCCTGAGGTTGCTTCTCATTTGGTACCAATTTTCCTTTTGCTACTTGATGCAGTTCTGATGTTGGAGTCCTGTAGATTATCGTCTCCTCAGAGGGTGTGCAGAAGTTAGGGAAAAACAATACTGAAACTGAAGCAGCAATTTGAAAG--G-AAAAAAATCAAAATGTC------------------------------------------------CAAAAAA-
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1481615  24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e calJac3.chr4             171319124 9000 - 171630274 I

a score=2355430.000000
s hg38.chr6_GL000254v2_alt     27701 319 +   4827813 GACCTATTA-TCCC-AACAGAGAATTTCAAGAGAGGAGTTGAAGTGAAAAAGGGAAAATGGGGCACATGCACCTGAGTCT---TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTCTAGAGCCCCTCATGAATGTTTGATAAAATAATTCATATAGAAATACATATATTTCTTTTTTCCTGGATACAAACATGGAAACAGCTTAAGATTTGGAAATTCTAGACAAGGTTGCCAGGCTAAAGAAATGTCTTCTCAGCAAGAAAATTTAGAATGTTCTTGTAATTGggcctggtgcgatggctcctgcctgtaatccaagca
s panTro5.chr6              29004735 319 + 175400573 GACCTATTA-TCCC-AACAAAGAATTTCAAGAGAGGAGTTGAAGTGAAAAAGGGAAAATGGGGCACATGCATCTGAGTCT---TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTCTAGAGCCCCTCATGAATGTTTGATAGAATAATTCATATAGAAATACATATATTTCTTTTTTCCTGGATACAAACATGGAAACAGCTTAAGATTTGGAAATTCTAGACAAGGTTGCCAGGCTAAAGAAATGTCTTCTCAGCAAGAAAATTTAGAATGTTCTTGTAATTGggcctggtgcgatggctcccgcctgtaatccaagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29248358 319 + 173848474 GACCTATTA-TCCC-AACAAAGAATTTCAAGAGAGGAGTTGAAGTGAAAAAGGGAAAATGGGGCACATGCATCTGAGTCT---TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTCTAGAGCCCCTCATGAATGTTTGATAGAATAATTCATATAGAAATACATATATTTCTTTTTTCCTGGATACAAACATGGAAACAGCTTAAGATTTGGAAATTCTAGACAAGGTTGCCAGGCTAAAGAAATGTCTTCTCAGCAAGAAAATTTAGAATGTTCTTGTAATTGggcctggtgcgatggctcccgcctgtaatccaagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5039237 319 +   6154872 GACCTATTA-TCCC-AAAAAAGAATTTCAAGAGAGGAGTTGAAGTGAAAAAGGGAAAATGGGGCATGTGCACCTGAGTCT---TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTCTAGAGCCCCTCATGAATGTTTGATAGAATAATTCATATAGAAATACATATATTTCTTTTTTCCTGGATACAAACATGGAAACAGCTTAAGATTTGGAAATTCTAGACAAGGTTGCCAGGCTAAAGAAATGTCTTCTCAGCAAGAAAATTTAGAATGTTCTTGTAACTGggcctggtgcgatggctcccgcctgtaatccaagca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74042237 319 + 122973662 GACCTATTA-TCCC-AACACAGAATTTCAAGAGGGGAGTTGAAGTGAAAAAGGGAAAATGGGGCACATGCACCTGAGTCT---TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTCCAGAACCCCTCATGAATGTTTGATAGAATAATTCATATAGAAATACATATATTTCTTTTTTCCTGGATACAAACATGGAAACAGCTTAAGATTTGGAAATTCTAGACAAGGTTGCCAGGCTAAAGAAATGTCTTCTCAGCAAGAAAATGTAGAATGTTCTTGTAATTGggcctggtgcaatggctcccgcctgtaatccaagca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29186417 319 + 172585720 GACCTATTA-TCTC-AACACAGAATTTCAAGAGAGGAGTTGAAGTGAAAAAGGGAAAATGGGGCAAATGCACCTAAGTCT---TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTCTAGGGCCCCTCATGAATGTTCGATAGAATAATTCATATAGAAATACATGTATTTCTTTTTTCCTGGATACAAACATGGAAACAGCTTAAGATTTGGAAATTCTACACAAGGTTGCCAGGCTGAAGAAATGTCTTCCCAGCAAAAAAATTTGGAATGTTCTTGTAATTGggcctggtgcgatggctcccgcctgtaatccaagca
i rheMac8.chr4             I 2 C 0
s macFas5.chr4              28874835 319 - 170955103 GACCTATTA-TCTC-AACACAGAATTTCAAGAGAGGAGTTGAAGTGAAAAAGGGAAAATGGGGCAAATGCACCTAAGTCT---TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTCTAGGGCCCCTCATGAATGTTCGATAGAATAATTCATATAGAAATACATGTATTTCTTTTTTCCTGGATACAAACATGGAAACAGCTTAAGATTTGGAAATTCTACACAAGGTTGCCAGGCTGAAGAAATGTCTTCCCAGCAAAAAAATTTGGAATGTTCTTGTAATTGggcctggtgcgatggctcccgcctgtaatccaagca
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1     1846617 319 -   2996164 GGCCTATTA-TCTC-AACACAGAATTTCAAGAGAGGAGTTGAAGTGAAAAAGGGAAAATGGGGCAAATGCACCTAAGTCT---TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTCTAGGGCCCCTCATGAATGTTCGATAGAATAATTCATATAGAAATACATGTATTTCTTTTTTCCTGGATACAAACATGGAAACAGCTTAAGATTTGGAAATTCTACACAAGGTTGCCAGGCTGAAGAAATGTCTTCCCAGCAAAAAAATTTGGAATGTTCTTGTAATTGggcctggtgcgatggctcccgcctgtaatccaagca
i macNem1.NW_012011356v1   I 2 C 0
s cerAty1.NW_012001495v1     1741256 319 -   2157725 GACCCATTA-TCCC-AACACAGAATTTCAAGAGAGGAGTTGAAGTGAAAAAGGGAAAATGGGGCAAATGCACCTAAGTCT---TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTGTAGGGCCCCTCATGAATGTTCGATAGAATAATTCACATAGAAATACATGTATTTCTTTTTTCCTGGATACAAACATGGAAACAGCTTAAGATTTGGAAATTCTACACAAGGTTGCCAGGCTGAAGAAATGTCTTCCCAGCAAAAAAATTTGGAATGTTCTTGTAATTGggcctggtgcgatggctcccgcctgtaatccaagca
i cerAty1.NW_012001495v1   I 2 C 0
s chlSab2.chr17             28194397 318 -  71996105 GACCTATTA-TCCC-AACACAGAATTTCAAGAGAGGAGTTGAAGTGAAAAAGGGAAAATGGGACACATGCACCTAAGTCT---TGACTTTGCTGCTCATTTGCTTTCA-TTTCAGTATTCTAGGGCCCCTCATGAATGTTCGATAGAATAACTCATATAGAAATACATATATTTCTTTTTTCCTGGATACAAACATGGAAACAGCTTAAGATTTGGAAATTCTAGACAAGGTTTCCAGGCTGAAGAAATGTCTTCCCAGCAAAAAAATTTGGAATGTTCTTGTAATTGggcctggtgcaatggctcccacctgtaatccaagca
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012104165v1     1856060 319 +   2316924 GACCCATTA-TCCC-AACACAGAATTTCAAGAGAGGAGTTGAAGTGAAAAAGGGAAAATGGGGCAAATGCACCTAAGTCT---TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTGTAGGGCCCCTCATGAATGTTCGATAGAATAATTCACATAGAAATACATGTATTTCTTTTTTCCTGGATACAAACATGGAAACAGCTTAAGATTTGGAAATTCTACACAAGGTTGCCAGGCTGAAGAAATGTCTTCCCAGCAAAAAAATTTGGAATGTTCTTGTAATTGggcctggtgcgatggctcccacctgtaatccaagca
i manLeu1.NW_012104165v1   I 2 C 0
s colAng1.NW_012115566v1     1777180 323 -   3067355 GACTGATTACCCCC-AACACAGCATTTCAACAGAGAAGTTGAAGTGAAAAAGGGAAAATGGGGCACATGCACCTGAATCTTGATGACTTTGCTGCACATTTGCTTTCATTTTCAGTATTCCAGAACCCCTCATGAATGTCTGACAGAATAATTCATATAGAAGTACTTATTTTTGTTCTTTCCTGGATACCAACACAGAAATAAGTTAAGATTTGGAAATTGTAGACAAGGGTGCCAGTTGGAAGAAATGTCCTGTCAGTAAGAAAACTTAGACTATTCCTGTAATTAggcctggtgtggtggctccagcctgtaatcccagca
i colAng1.NW_012115566v1   I 52963 T 52479
s saiBol1.JH378348            140525 319 -    375362 GATCTATTG-TCCCCAACACAAAATTTCAAGAGGGCAGTTGAAGTCAAAAAGGGAAAATAGGGCATACGCGCCTGAGTGTTGATGACTTTGCTGCCCATTTGTTTCCATTTGCAGTATTCTCGGGCCCGTCCTGAATATTTGATAGAATAATTGCTGTAGAAATACATATATTTCTTTTTTCCTGGATACCAACACAGA---AACTTAAGATTTGGAAATTCTAGACAAGGATGCAAGGCTGAAGAAATGTCTTCTCAGCAAGAAAAT-CAGAATGTTCTCATAACTGggcctggtgtggtggctcccacctgtaatccaagca
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      143922 321 -    373274 GATCTATTA-TCCCAAGCACAAAATTTCAAGAGGGCAGTTGAAGTAAAAAAGGGAAAATAGGGCATATGCACCTGAGTGTTGATGACTTTGCTGCCCATTTGTTTCCATTTTCAGTATTCTAGGGCCCATCCTGAATATTTGATAGAATAATTCCTATAGAAATACATATATTTCTTTTTTCCTGGATACCAACACAGAAACAACTTAAGATTTGGAAATTCTAGACAACGATGTGAGGCTGAAGAAATGTCTTTTCAGCAAGAAAAT-TAGAATGTTCTCGTAATTGggcctggtgcggtggctccc-cctgtaatccaagca
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1481615  24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e calJac3.chr4             171319124 9000 - 171630274 I

a score=1339706.000000
s hg38.chr6_GL000254v2_alt     28020 260 +   4827813 ctctgggaggcctacctaggcaggtggattgcttaaacctagg----atttaaagaccagcctgggcaacacggtgaaacccacagtctac-aaaaaaaatac-------aaaaaaaaaaaaaaaaaaaaat----------tt--agccaggcatggtggtgctcgcctgtagtcccatctactcagggtgctgacatgtggagtcacttcagcctagagaggttgaggctgtagtgagctctgattgtataactgtactccagcctggatgacagagtgaga
s panTro5.chr6              29005054 267 + 175400573 ctctgggaggcctacctaggcaggtggattgcttaaacctagg----atttaaagaccagcctgggcaacacggtgaaacccactgtctac-aaaaaaaataccaaaaaaaaaaaaaaaaaaaaaaaaaaat----------tt--agccaggcatggtggtgctcgcctgaagtcccatctactcagggtgctgacatgtggagtcacttcagcctagggaggttgaggctgtagtgagctctgattgtataactgcactccagcctggatgacagagtgaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29248677 249 + 173848474 ctctgggaggcctacctaggcaggtggattgcttaaacctagg----atttaaagaccagcctgggcaacacggtgaaacccactgtctac--aaaaaaatac-------------------caaaaaaaat----------ttaaagccaggcatggtggtgctcgcctgaagtcccatctacacagggtgctgacatgtggagtcacttcagcctagggaggttgaggctgtagtgagctctgattgtataactgcactccagcctggatgacagagtgaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5039556 261 +   6154872 ctctgggaggcctacctaggcaggtggattgcttaaacctagg----atttaaagatcagcctgggcaacacggtgaaacccacagtctac--aaaaaaatac-----caaaaaaaaaaaaaaaaaaaaaat----------tt--agccaggcatggtggtgctcgcctgtagtcccatctactcagggtgctgacatgtggagtcacttcagcctagggaggttgaggctgtagtgagctctgattgtataactgcactccagcctggatgacagagtgaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74042556 257 + 122973662 ctttgggaggcctacctaggcaggtggattgcttaaacctagg----atttcaagaccagcctgggcaacatggtgaaacccactgtctgcaaaaaaaaatac-----------caaaaaaaaaaaaaaaat----------tt--agccaggcatggtggtgcttgcctgtagtcccatctactcagggcgctgacatgtggagttacttcagcccagggaggttgaggctgtagtgagttctgattgtataactgcactccagcccggatgacagggtgaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29186736 238 + 172585720 ctttgggagg----cctaggcaggtggattgcttaaacccagg----atttcaagaccagcctgggcaacatggtgaaacccagtgtctac--aaaaaaatac--------aaaaaaaaaaaaaaaaaaaaa----------ag--agctgggcatggtgatgc----------------ctactcagggtgctgatatggggagttgcttgagcctagggaggttgaggctgtagtgagctctgatcgtataattgcactccagcctggatgacagagtgaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28875154 238 - 170955103 ctttgggagg----cctaggcaggtggattgcttaaacccagg----atttcaagaccagcctgggcaacatggtgaaacccagtgtctac--aaaaaaatac--------aaaaaaaaaaaaaaaaaaaaa----------ag--agctgggcatggtgatgc----------------ctactcagggtgctgatatggggagttgcttgagcctagggaggttgaggctgtagtgagctctgatcacataattgcactccagcctggatgacagagtgaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1846936 240 -   2996164 ctttgggagg----cctaggcaggtggattgcttaaacccagg----atttcaagaccagcctgggcaacatggtgaaacccagtgtctac--aaaaaaatac-----aa-aaaaaaaaaaaaaaaaaaaaa----------ag--agctgggcatggtgatgc----------------ctactcagggtgctgatatggggagttgcttgagcctagggaggttgaggctgtagtgagctctgatcgtataattgcactccagcctggatgacagagtgaga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1741575 235 -   2157725 ctttgggagg----cctaggcaggtggattgcttaaacccagg----atttcaagaccagcctgggcaacatggtgaaacccagtgtctac--aaaaaaatac-----------acacacaaaaaaaaaaaa----------tg--agctgggcatggtgatac----------------ctactcagggtgctgatatggggagttgcttgagcctagggaggttgaggctgtagtgagctctgatcgtataattgcactccagcctggatgacagagtgaga
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28194715 241 -  71996105 ctttgggagg----cctaggcaggtggattgcttaaacccagg----atttcaagaccagcctgggcaacatggtgaaacccagtgtctac--aaaaaaataa-----aaaaaaaaaaaaaaaaaaaaaaaa----------ag--agctgggcatggtgatgc----------------ctactcagggtgctgatatgggaagttgcttgagcctagggaggttgaggctgtagtgagctctgatcgtataactgcactccagcctggatgacagagtgaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1856379 234 +   2316924 ctttgggagg----cctaggcaggtggattgcttaaacccagg----atttcaagaccagcctgggcaacatggtgaaacccagtgtctac--aaaaaaat----------acaaaaaaaaaaaaaaaaaaa----------ag--agctgggcatggtgatac----------------ctactcagggtgctgatatggggagttgcttgagcctagggaggttgagcc--tagtgagctctgatcgtataattgcactccagcctggatgacagagtgaga
i manLeu1.NW_012104165v1   C 0 C 0
s saiBol1.JH378348            140844 264 -    375362 ctttgggagg----cccaggcaggtggattgcttaaggccaggatttatttcaagaccagtctgtgcaacatggtgaaatgcagactctac--ataaaaatac-----------caaaaataaaaataaaataaaaattttaaa--agccgggcatggtggtgcttgcctgtagtcccagccactcaggaggctgacatgggg-gtcactttaacccagggaggttgagactgcagtgagctgtgatcccaacactgcactccagcctggatgacagagcgaga
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      144243 259 -    373274 ctttgggagg----cctaggcaggtgtattgcttaagcccaggatttatttcaagaccagcctgcgtaacatggtgaaacacagactctac--ataaaaataa-----------caaaaataaaaataaaat-----tttaaaa--agccaggcatggtggtacttgcctatagtcccagccactcaggaggctgatatgggg-gtcacttgaacccagggaggttgagagtgcagtgacctgtgatcccaacactgcactccagcctggatgacagagtgaga
i cebCap1.NW_016108108v1   C 0 I 24
e otoGar3.GL873742           1481615  24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e calJac3.chr4             171319124 9000 - 171630274 I
e colAng1.NW_012115566v1     1777503 52479 -   3067355 T

a score=44462.000000
s hg38.chr6_GL000254v2_alt     28280 8 +   4827813 ccctgctt
s panTro5.chr6              29005321 8 + 175400573 ccctgctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29248926 8 + 173848474 ccctgctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5039817 8 +   6154872 ccctgctt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74042813 8 + 122973662 ccctgCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29186974 8 + 172585720 ccctgcct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28875392 8 - 170955103 ccctgcct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1847176 8 -   2996164 ccctgcct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1741810 8 -   2157725 ccctgcct
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28194956 8 -  71996105 ccctgcct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1856613 8 +   2316924 ccctgcct
i manLeu1.NW_012104165v1   C 0 C 0
s saiBol1.JH378348            141108 8 -    375362 gcctgcct
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1481615 24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e cebCap1.NW_016108108v1      144502 24 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I
e colAng1.NW_012115566v1     1777503 52479 -   3067355 T

a score=18591.000000
s hg38.chr6_GL000254v2_alt     28288 20 +   4827813 aaaaga-----------------aagaaaagaaagaa--
s panTro5.chr6              29005329 18 + 175400573 aaaaga-----------------aagaaaagaaag----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29248934 18 + 173848474 aaaaga-----------------aagaaaagaaag----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5039825 18 +   6154872 aaaaga-----------------aagaaaagaaag----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74042821  2 + 122973662 ga-------------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29186982 20 + 172585720 gaagaa-----------------aaagaaagaaag--aa
i rheMac8.chr4             C 0 I 17
s macFas5.chr4              28875400 20 - 170955103 gaagaa-----------------aaagaaagaaag--aa
i macFas5.chr4             C 0 I 17
s macNem1.NW_012011356v1     1847184 20 -   2996164 gaagaa-----------------aaagaaagaaag--aa
i macNem1.NW_012011356v1   C 0 I 3416
s cerAty1.NW_012001495v1     1741818 37 -   2157725 gaagaagaaagaaagaacgaaggaaagaaggaaag--aa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28194964 21 -  71996105 gaagaa----------------gaaagaaagaaag--aa
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012104165v1     1856621 21 +   2316924 gaagaa----------------gaaagaaagaaag--aa
i manLeu1.NW_012104165v1   C 0 I 1
e saiBol1.JH378348            141116  0 -    375362 C
e otoGar3.GL873742           1481615 24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e cebCap1.NW_016108108v1      144502 24 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I
e colAng1.NW_012115566v1     1777503 52479 -   3067355 T

a score=106327.000000
s hg38.chr6_GL000254v2_alt     28308  86 +   4827813 gaaagaaagaaagaaagaaag-aaagaagaaagaaagaaagaaagaaagaaagaaagaa------------agaaagaaag------------------agaaagaaagaaagaaag----
s panTro5.chr6              29005347  35 + 175400573 ------------------------agaagaaagaaagaaagaaagaaagaaagaaagaa--------------------------------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29248952  44 + 173848474 -----------------------aagaagaaagaaagaaagaaagaaagaaagaaagaa------------agaaagaa------------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5039843  31 +   6154872 --------------------------aagaaagaaggaaagaaagaaagaaagaaag----------------------------------------------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74042823  33 + 122973662 --------------------------aagaaagaaagaaagaaagaaagaaagaaagaa--------------------------------------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29187019  97 + 172585720 ------------gaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaagga------------aggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaag
i rheMac8.chr4             I 17 C 0
s macFas5.chr4              28875437  97 - 170955103 ------------gaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaagga------------aggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaag
i macFas5.chr4             I 17 C 0
s cerAty1.NW_012001495v1     1741855  97 -   2157725 ------------gaaaggaagaaaggaagaaagaaaggaaggaaggaaggaaggaagaa------------aggaagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28194986  94 -  71996105 ------------gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa---------------naggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaag
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012104165v1     1856643 109 +   2316924 ------------gaaagaaggaaagaaggaaagaaggaaagaaggaaagaaagaaagaaagaaagaaagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagggag
i manLeu1.NW_012104165v1   I 1 C 0
e saiBol1.JH378348            141116   0 -    375362 C
e otoGar3.GL873742           1481615  24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e cebCap1.NW_016108108v1      144502  24 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I
e colAng1.NW_012115566v1     1777503 52479 -   3067355 T
e macNem1.NW_012011356v1     1847204 3416 -   2996164 I

a score=13559.000000
s hg38.chr6_GL000254v2_alt     28394 6 +   4827813 agaaag-
s panTro5.chr6              29005382 6 + 175400573 agaaag-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29248996 7 + 173848474 agaaaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5039874 6 +   6154872 agaaag-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74042856 6 + 122973662 agaaag-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29187116 4 + 172585720 g--aaa-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28875534 6 - 170955103 ggaaag-
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1741952 6 -   2157725 agaaag-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28195080 6 -  71996105 agaaag-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1856752 6 +   2316924 ggaggg-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1725024 6 -   3067355 agaaag-
i colAng1.NW_012115566v1   T 52479 C 0
e saiBol1.JH378348            141116 0 -    375362 C
e otoGar3.GL873742           1481615 24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e cebCap1.NW_016108108v1      144502 24 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I
e macNem1.NW_012011356v1     1847204 3416 -   2996164 I

a score=48314.000000
s hg38.chr6_GL000254v2_alt     28400 14 +   4827813 aaagaaaaaaaaag
s panTro5.chr6              29005388 14 + 175400573 aaagaaaAAAAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29249003 14 + 173848474 aaagaaaaaaaaaG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5039880 13 +   6154872 aaag-aaaaaaaTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74042862 14 + 122973662 aaagaGAAAAGTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29187120 14 + 172585720 gaagaaagaagTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28875540 14 - 170955103 aaagaaAAAAGTTC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1741958 14 -   2157725 aaagaaaaaagTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28195086 14 -  71996105 aaagaaaaaagTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1856758 14 +   2316924 aaagaaAAAAGTTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1725030 14 -   3067355 aaagaaaaaagTTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            141116 14 -    375362 aaagaaaaaaaCAG
i saiBol1.JH378348         C 0 I 3
e otoGar3.GL873742           1481615 24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e cebCap1.NW_016108108v1      144502 24 -    373274 I
e calJac3.chr4             171319124 9000 - 171630274 I
e macNem1.NW_012011356v1     1847204 3416 -   2996164 I

a score=121825.000000
s hg38.chr6_GL000254v2_alt     28414 20 +   4827813 TTCTTACAGCACTTTAATAA
s panTro5.chr6              29005402 20 + 175400573 TTCTTACAGCAGTTTAATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29249017 20 + 173848474 TTCTTACAGCAGTTTAATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5039893 20 +   6154872 TTCTTACAGCAGTTTAATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74042876 20 + 122973662 TTCTTACAGCAGTTTAATGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29187134 20 + 172585720 TTCTGACAGCAGTTTAATGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28875554 20 - 170955103 TTCTGACAGCAGTTTAATGA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1741972 20 -   2157725 TTCTGACAGCAGTTTAATGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28195100 20 -  71996105 TTCTGACAGCAGTTTAAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1856772 20 +   2316924 TTCTGACAGCAGTTTAATGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1725044 20 -   3067355 TTCTGACAGCAGTTTAATGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            141133 20 -    375362 TTCTTCCAGCAGTTTAACGA
i saiBol1.JH378348         I 3 C 0
s cebCap1.NW_016108108v1      144526 20 -    373274 TTCTTCCAGCAGTTTAATGA
i cebCap1.NW_016108108v1   I 24 C 0
e otoGar3.GL873742           1481615 24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e calJac3.chr4             171319124 9000 - 171630274 I
e macNem1.NW_012011356v1     1847204 3416 -   2996164 I

a score=996747.000000
s hg38.chr6_GL000254v2_alt     28434 147 +   4827813 TGGAGTTGACTCAA-GATACAAACCCGGGTTTTTCTAATTTCAAAATGTTTCTTGCATACA-CCACACCCCCATATAT-ATGCTCATACAGTATAATAGTTACTTCACTGTATGTTTC-TTTTT--TTCA-TATTTCTTGTGATTTAAAAATAA
s panTro5.chr6              29005422 147 + 175400573 TGGAGTTGACTCAA-GATACAAACCCGGGTTTTTCTAATTTCAAAATGTTTCTTGCATACA-CCACACCCCCATATAT-ATGCTCATACAGTATGATAGTTACTTCACTGTATGTTTC-TTTTT--TTCA-TATTTCTTGTGATTTAAAAATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29249037 147 + 173848474 TGGAGTTGACTCAA-GATACAAACCTGGGTTTTTCTAATTTCAAAATGTTTCTTGCATACA-CCACACCCCCATATAT-ATGCTCATACAGTATGATAGTTACTTCACTGTATGTTTC-TTTTT--TTCA-TATTTCTTGTGATTTAAAAATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5039913 148 +   6154872 TGGAGTTGACTCAA-GATACAAACCCGGGTTTTTCTAATTTCAAAATGTTTCTTGCATACA-CCATACCCCCATGTAT-ATGCTCATACAGTATAATAGTTACTTCACTGTATGTTTCTTTTTT--TTCA-TATTTCTTGTGATTTAAAAATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74042896 147 + 122973662 TGGAGCTGACTCAA-GATACAAACCCGGGTTTTTCTAATTTCAAAATGTTTCTTGCATACA-CCACACCCCCATATAT-ATGCTTATACAGTATAATAGTTACTTCACTGTATGTTTC-TTTTT--TTCA-TATTTCTTGTGATTTAAAAATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29187154 146 + 172585720 TGGAGTTGACTCAA-GATACAAACCTGGGGTTTTCCAATTTCAAAATGTTTCTTGTATACA-CCACACCCCCATATAT-ATGCTCATACAGTATAATAGTTACTTCACTGTACGTTTT-TTTT---TATA-TATTTCTTGTGATTTAAAAATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28875574 149 - 170955103 TGGAGTTGACTCAA-GATACAAACCTGGGGTTTTCCAATTTCAAAATGTTTCTTGCATACA-CCACACCCCCATATAT-ATGCTCATACAGTGTAATAGTTACTTCACTGTACGTTTC-TTTTTTATATA-TATTTCTTGTGATTTAAAAATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1850620 148 -   2996164 TGGAGTTGACTCAACGATACAAACCT-GGGTTTTCCAATTTCAAAAT-TTTCTTGCATACACCCACCGCCCACTATATAATGCTCATACAGTATAGTAG-TACTTCACTGT-CGTTTC-TTTTTT-TATACTATTTCTTGTGATTTAAAAATAT
i macNem1.NW_012011356v1   I 3416 C 0
s cerAty1.NW_012001495v1     1741992 148 -   2157725 TGGAGTTGACTCAA-GATACAAACCTGGGGTTTTCCAATTTCAAAATGTTTCTTGCATACA-CCACACCCCCATATAT-ATGCTCATACAGTATAATAGTTACTTCACTGTACGTTTC-TTTTTT-TTCA-TATTTCTTGTGATTTAAAAATAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28195120 149 -  71996105 TGGAGTTGACTCAA-GATACAAACCTGGGGTTTTCCAATTTCAAAATGTTTCTTGCATACA-CCACACCCCCATATAT-ATGCTCATACAGTATAATAGTTACTTCACTGTACGTTTC-TTTTTTTTTCA-TATTTCTTGTGATTTAAAAATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1856792 149 +   2316924 TGGAGTTGACTCAA-GATACAAACCTGGGGTTTTCCAATTTCAAAATGTTTCTTGCATACA-CCACACCCCCATATAT-ATGCTCATACAGTATAATAGTTACTTCACTGTACGTTTC-TTTTTTTTTCA-TATTTCTTGTGATTTAAAAATAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1725064 124 -   3067355 TGGAGTTGACTCAA-GATACAAACCTGGGGTTTTCTAACTTCAAAATGTTTCTTGCATACA---------------------------CAGTATAATAGTTACTTCACTGTACGTTTC-TTTTTTTTTCA-TATTTCTTGTGATTTAAAAATAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            141153 146 -    375362 TGAAATTGACTCAG-GATACAAACCCCGGTTTTTCTAATATCAAAATATTTCTTGCGTATA-CCACACCCCTATATCG-ATGCTCATACAGCATAATAGTTCTTTCACTGTATGTTTC-TTTT---TTCA-TATTTCTTGTGATTTAAAAATAC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      144546 146 -    373274 TGGAGTTGACTCAA-GATACAAACCCCAGTTTTTCTAATTTCAAAATGTTTCTTGCATATA-CCATACCCCTATATCT-ATGCTCATGCAGTATAATAGTTCTTTCACTATATGTTTC-TTCT---TTCA-TATTTCTTGTGATTTAAAAATAC
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1481615  24 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e calJac3.chr4             171319124 9000 - 171630274 I

a score=994402.000000
s hg38.chr6_GL000254v2_alt     28581 124 +   4827813 CCCTCGCCCAATACATATAAATAATATCAAATC-AAAAATGACTTGTAAATGCCACAGCATATAGCACGTTGGAATTTCTTAGGTTTTAAAACTAATAACTTCCT---AAG-TTTAAGACTTTAAATAA
s panTro5.chr6              29005569 127 + 175400573 CCCTCGCCCAATACATATAAATAATATCAAATC-AAAAATGACTTGTAAATGCCACAGCATATAGCTCGTTGGAATTTCTTAAGTTTTAAAACTAATAGCTTCCTAAGAAG-TTTAAGACTTTAAATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29249184 127 + 173848474 CCCTAGCCCAATACATATAAATAATATCAAATC-AAAAATGACTTGTAAATGCCACAGCATATAGCTCGTTGGAATTTCTTAAGTTTTAAAACTAATAGCTTCCTAAGAAG-TTTAAGACTTTAAATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5040061 124 +   6154872 CCCTCACCCAATACATATAAATAATATCAAATC-AAAAATGACTTGTAAACGCCACAGCATATAGCACGTTGGAATTTCTTAGGTTTTAAAACTAATAACTTCCT---AAG-TTTAAGACTTTAAATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74043043 124 + 122973662 CCCTCGCCCAATACATATAAATAATATCAAATC-AAAAATTACTTGTAAATGCCACAGCGTATAGCACATTGGAATTTCTTAGGTTTTAAAACTAATAACTTCCT---AAG-TTTAAGACTATAAATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29187300 124 + 172585720 CCCCCGCCCAATACATATAAATAATATAAAATC-AAAAATGACTTGTAAATGCTGCAGCATATAGCACGTTGGAATTTCTTAGGTTTTAAAACTAATAACTTCCT---GAG-TTTAAGACTTTAAATAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28875723 124 - 170955103 CCCCCGCCCAATACATATAAATAATATAAAATC-AAAAATGACTTGTAAATGCTGCAGCATATAGCACGTTGGAATTTCTTAGGTTTTAAAACTAATAACTTCCT---GAG-TTTAAGACTTTAAATAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1850768 122 -   2996164 CCCCCGCCCAATACATATAAATAATAT--AATC-AAAAATGACTTGTAAATGCTGCAGCATATAGCACGTTGGAATTTCTTAGGTTTTAAAACTAATAACTTTCT---GAG-TTTAAGACTTTAAATAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1742140 125 -   2157725 CCCCCGCCCAATACATATAAATAATATAAAATCAAAAAATGACTTGTAAATGCTACAGCATATAGCACGTTGGAATTTCTTAGTTTTTAAAACTAATAACTTCTT---GAG-TTTAAGACTTTAAATAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28195269 124 -  71996105 CCCCCGCCCAATACATATAAATAATATAAAATC-AAAAATGACTTGTAAATGCTGCAGCATATAGCACGTTGGAATTTCTTAGGTTTTAAAACTAATAACTTCCT---GAG-TTTAAGACTTTAAATAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1856941 125 +   2316924 CCCTCGCCCAATACATATAAATAATATAAAATCAAAAAATGACTTGTAAATGCTACAGCATATAGCACGTTGGAATTTCTTAGTTTTTAAAACTAATAACTTCTT---GAG-TTTAAGACTTTAAATAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1725188 124 -   3067355 CCCCCGCCCAATACATACAAATAATATAAAACC-AAAAATGACTTGTAAATGCTGCAGCATATAGCACGTTGGAATTTCTTAGGTTTTAAAACTAATAACTTCCT---GAG-TTTAAGACTTTAAATAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            141299 123 -    375362 TCCCCACCTAATACATATAAGTAACATCAAATA-AAAAATGACTTGTAAATGCCACGGTATAAAGCACATTGGAATTTCTTAGGTTTTAAAAGTAATAACTTGCT----AG-TTTAAGGCTTTAAATAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      144692 123 -    373274 TCCCCACCTAATATAAAGAAATAACATCAAATC-AAAAATGACTGGTAAATGCCACAGTATATAGCACATTGGAATTTCTTAGGTTTTAAAACTATTAACTTCCT----AG-TTTAAGACTTTAAATAA
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1481639 125 -   2232465 CCCTCTCCCTACACACATTCATAATATTAAATC-GGAAATGAATTGTAAGTGCAACAGCATACAGAATATTGGAATTTCTTTGTTTTTAAAACTAATAATTTCCT---AGGttttaaaattttaaataa
i otoGar3.GL873742         I 24 I 17
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e calJac3.chr4             171319124 9000 - 171630274 I

a score=1180954.000000
s hg38.chr6_GL000254v2_alt     28705 171 +   4827813 ggacgggcttagtggctcacgcctgaaatcccagcactttgagaggccgaggcaggtggatcacctgaggtcaggaggtcgagaccaacctgatcaacatggcgaaaccctgtctctactaaaaatacaaaaattagccgggca-tggttgcgggggcctgt--aatctcagct
s panTro5.chr6              29005696 171 + 175400573 ggacgggctcagtggctcacgcctgaaatcccagcactttgagaggccgaggcgggtggatcacctgaggtcaggaggtcgagaccaacctgatcaacatggcgaaaccctgtctctactaaaaatacaaaaattagccaagca-tggttgcgggggcctgt--aatctcagct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29249311 171 + 173848474 ggacgggctcagtggctcacgcctgaaatcccagcactttgagaggccgaggcgggtggatcacctgaggtcaggaggtcgagaccaacctgatcaacatggcgaaaccctgtctctactaaaaatacaaaaattagccaagca-tggttgcgggggcctgt--aatctcagct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5040185 171 +   6154872 GGATgggctcagtggctcacgcctgaaatcccagcactttgagaggccgaggcgggtggatcacctgaggtcaggaggtcgagaccaacctgatcaacatggcgaaaccctgtctctactaaaaatacaaaaattagccgggcg-tggttgcgggggcctgt--aatctcagct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74043167 170 + 122973662 ggacgggcccagtggctcacgcctgaaatccgagcactttgagaggccgaggcgggtggatcacctgaggtcaggaagtcgagaccaacctgaccaacatggagaaaccctgtctctactaaaaatacaaaaattagccgggca-tggctg-ggggtcctgt--aatctcagct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29187424 171 + 172585720 ggacgggcccagtggctcacgcctgaaatcccagcattttgagaggccgaggcgggtggaacacctgagctcaggaggtcgaccccagcctgaccaacatggcgaaaccttgtctctaccaaaaatacaaaaattagccggaca-tggttgcggggacctat--aatctcagct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28875847 171 - 170955103 ggacgggcccagtggctcacgcctgaaatcccagcattttgagaggccgaggcgggtggaacacctgagctcaggaggtcgaccccagcctgaccaacatggcgaaaccttgtctctaccaaaaatacaaaaattagccggaca-tggttgcggggacctat--aatctcagct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1850890 171 -   2996164 ggacgggcccagt-gctcacgcctgaaat-ccagcattttggagaggcgaggcgggtggaacacctgagctcaggaggtcgaccccagcctgaccaacatggcgaaaccttgtctctacc-aaaatacaaaaacttcgcggacactggttgcggggaccttttaattctcagct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1742265 170 -   2157725 ggacgggcccagtggctcccgcctgaaatcccagcattttgagaggccgaggcgggtggaacacctgaggtcaggagg-cgaccccagcctgactagcatggcgaaaccttgtctctaccaaaaatacaaaaattagccgggca-tggttgcggggacctat--aatctcagct
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28195393 171 -  71996105 AGAcgggcccagtggctcacgcctgaaatcccagcattttgagaggccgaggcgggtggaacacctgaggtcaggaagtcgaccccagcctgaccaacacggcgaaaccttgtctctaccaaaaatacaaaaattagccggaca-tggttgcggggacctat--aatctcagct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1857066 170 +   2316924 ggacgggcccagtggctcccgcctgaaatcccagcatgttgagaggccaaggcgggtggaacacctgaggtcaggagg-cgaccccagcctgaccagcatggctaaaccttgtctctaccaaaaatacaaaaattagccgggca-tggtttcggggacctat--aatctcagct
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1725312 171 -   3067355 ggacgggcccagtggctcacgcctgaaatcccaacattttgagaggccgaggcaggtggaacacctgaggtcaggaggtcgaccccagcctgaccaacatgacgaaaccttatctctaccaaaaatacagaaattagccggaca-tggttgcggggacctat--aatctcagct
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            141422 170 -    375362 ggacaggcgcggtggctcacgcctgtaatcccagtatttcgggaagccaaggcgggtggatcacctgaggtcaggaattcgagaccaacctgaccaccatggcaaaaccctgtctctactaaaaatacaaaaattaacctgatg-tggcgatgggcgcctgt--aatcccagc-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      144815 170 -    373274 ggccaggcgcggtggctcacgcctgtaaccccagcattttgggaggcggaggtgggtggatcacctgaggtcaggaattcgagaccaacctgaccaacatggcgaaaccccatctctactaaaaatacaaaaattaaccgggca-tggcgatgggagcctgt--aatcccagc-
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1481764  17 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e calJac3.chr4             171319124 9000 - 171630274 I

a score=553552.000000
s hg38.chr6_GL000254v2_alt     28876 67 +   4827813 tacttgggaggctgagatatgagaacagcttgaactcaggaggcgga-ggttgcagtgagccgagatc
s panTro5.chr6              29005867 67 + 175400573 tacttgggaggctgagacatgagaatagcttgaactcaggaagcgga-ggttgcagtgagccgagatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29249482 67 + 173848474 tacttgggaggctgagacatgagaatagcttgaactcaggaagcgga-ggttgcagtgagccgagatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5040356 67 +   6154872 tacttgggaggctgagacataagaatatcttgaactcaggaggcgga-ggttgcagtgagccgagatc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74043337 67 + 122973662 tactagggaggctgagacatgagaatagcttgaactcaggaggcgga-ggttacaatgagccgagatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29187595 67 + 172585720 tactcgggaggctgagacatgagaacagcttgaacttgggaggcaga-ggttgcagtgagccgagatc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28876018 67 - 170955103 tactcgggaggctgagacatgagaacagcttgaactcgggaggcaga-ggttgcagtgagccgagatc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1851061 67 -   2996164 tactcgggaggctgagacatgagaacagcttg-actcgggaggcagagggttgcactgagccgagatc
i macNem1.NW_012011356v1   C 0 I 206
s cerAty1.NW_012001495v1     1742435 67 -   2157725 tacttgggaggctgagacatgagaacagcttgaactcgggaggcaga-ggttgcagtgagccgagatc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28195564 67 -  71996105 tactcgggaggctgagacatgagaacagcttgaactcgggaggcaga-ggttgcagtgagccgagatc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1857236 67 +   2316924 tactcgggaggctgagacatgagaacagcttgaactcgggaggcaga-ggttgcagtgagccgagatc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1725483 67 -   3067355 tactcgggaggctgagacatgagaacagcttgaactcgggaggcaga-ggttgcagtgagccgagatc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328124 67 - 171630274 tactgcggaggctgaggcaggagaatcacttcaacccgggaggcgga-ggttgctgtgagcgcagatc
i calJac3.chr4             I 9000 C 0
s saiBol1.JH378348            141592 67 -    375362 tactcgggaggctgaggcaggagaatcgcttgaaaccaggaggcgga-ggttgcggtgagctgagatc
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      144985 67 -    373274 tacttgggaggatgaggcaggagaatctcttgaaaccgggaggcaga-ggttgcggtgagctgagatc
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1481764 17 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I

a score=197816.000000
s hg38.chr6_GL000254v2_alt     28943 27 +   4827813 gcgccgttgcactccagcctgggcgac
s panTro5.chr6              29005934 27 + 175400573 gcgccggtgcactccagcctgggcgac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29249549 27 + 173848474 gcgccggtgcactccagcctgggcgac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5040423 27 +   6154872 gcgccgttgcactccagcctgggcgac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74043404 27 + 122973662 gcgccgttgcactccagcctgggcgac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29187662 27 + 172585720 gtgccattgcactccagcctgggtgac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28876085 27 - 170955103 gtgccgttgcactccagtctgggtgac
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1742502 27 -   2157725 gtgccgttgcactccagcctgggcgac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28195631 27 -  71996105 gtgccgttgcactccagcctgggtgac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1857303 27 +   2316924 gtgccgttgcactccagcctgggcgac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1725550 27 -   3067355 gtgccgctgcactccagcctgggtgac
i colAng1.NW_012115566v1   C 0 I 68584
s calJac3.chr4             171328191 27 - 171630274 gcgccgctgaaccccagtgtgggcatc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            141659 27 -    375362 gcgccactgtactccagcctgggcgac
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      145052 27 -    373274 gcgccattgtactccagcctgggcgac
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1481764 17 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e macNem1.NW_012011356v1     1851128 206 -   2996164 I

a score=10108.000000
s hg38.chr6_GL000254v2_alt     28970 2 +   4827813 gg
s panTro5.chr6              29005961 2 + 175400573 gg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29249576 2 + 173848474 gg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5040450 2 +   6154872 gg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74043431 2 + 122973662 ag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29187689 2 + 172585720 ag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28876112 2 - 170955103 ag
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1742529 2 -   2157725 ag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28195658 2 -  71996105 ag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1857330 2 +   2316924 ag
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171328218 2 - 171630274 ag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            141686 2 -    375362 gg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      145079 2 -    373274 ag
i cebCap1.NW_016108108v1   C 0 I 38
e otoGar3.GL873742           1481764 17 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e colAng1.NW_012115566v1     1725577 68584 -   3067355 I
e macNem1.NW_012011356v1     1851128 206 -   2996164 I

a score=38802.000000
s hg38.chr6_GL000254v2_alt     28972 19 +   4827813 agtgagactccgtc-caaaa
s panTro5.chr6              29005963 19 + 175400573 agtgagactccgtc-caaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29249578 19 + 173848474 agtgagactccgtc-caaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5040452 19 +   6154872 agtgagactccgtc-caaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74043433 19 + 122973662 agtgagactccgtc-caaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29187691  9 + 172585720 agcgagact-----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28876114  9 - 170955103 agcgagact-----------
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1742531 19 -   2157725 agcgagactcTTTC-CAAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28195660 19 -  71996105 agcgagactccttc-caaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1857332 19 +   2316924 agcgagactcTTTC-CAAGA
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171328220 20 - 171630274 agccagtctccgtctcaaaa
i calJac3.chr4             C 0 I 47
s saiBol1.JH378348            141688 11 -    375362 ag--agtc-------caaaa
i saiBol1.JH378348         C 0 I 27
e otoGar3.GL873742           1481764 17 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e cebCap1.NW_016108108v1      145081 38 -    373274 I
e colAng1.NW_012115566v1     1725577 68584 -   3067355 I
e macNem1.NW_012011356v1     1851128 206 -   2996164 I

a score=132400.000000
s hg38.chr6_GL000254v2_alt     28991 24 +   4827813 aCTTTAAATAATTTATGTAAT----GAG
s panTro5.chr6              29005982 24 + 175400573 aCTTTAAATAATTTATGTAAT----GAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29249597 24 + 173848474 aCTTTAAATAATTTATGTAAT----GAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5040471 24 +   6154872 aCTTTAAATAATTTATGTAAT----GAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74043452 24 + 122973662 aCTTTAAATAATTTATGTAAT----GAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29187700 23 + 172585720 -ccTTAGATAATTTATGTAAT----GAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28876123 23 - 170955103 -ccTTAGATAATTTATGTAAT----GAC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1742550 24 -   2157725 ACTTTAAATAATTTATGTAAT----GAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28195679 24 -  71996105 aCTTTAAATAATTTATGTAAT----GAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1857351 24 +   2316924 ACTTTAAATAATTTATGTAAT----GAC
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171328287 24 - 171630274 ACTTTAAGCAATTTATGTAAT----GTC
i calJac3.chr4             I 47 C 0
s saiBol1.JH378348            141726 28 -    375362 ACTTTAAGTAATTTAGGTAATATCAGTT
i saiBol1.JH378348         I 27 C 0
s cebCap1.NW_016108108v1      145119 28 -    373274 ACTTTATGTAATTTATGTAATATCAGTT
i cebCap1.NW_016108108v1   I 38 C 0
e otoGar3.GL873742           1481764 17 -   2232465 I
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e colAng1.NW_012115566v1     1725577 68584 -   3067355 I
e macNem1.NW_012011356v1     1851128 206 -   2996164 I

a score=640447.000000
s hg38.chr6_GL000254v2_alt     29015 111 +   4827813 AGCACTTCATGGAAGACTTCAGTGGAATATACAA--AGGAGAGAGTGATA----------CAAACATGTACATTACCTTTATCAGACTTTC-AAAAA-CTCCCAAAAATTGGAG--ATAT---------------------------------------GTAAGCT
s panTro5.chr6              29006006 111 + 175400573 AGCACTTCATGGAAGACTTCAGTGGAATATACAA--AGGAGAGAGTGATA----------CAAACATGTACATTACCTTTATCAGACTTTC-AAAAA-CTCCCAAAAATTGGAG--ATAT---------------------------------------GTACGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29249621 111 + 173848474 AGCACTTCATGGAAGACTTCAGTGGAATATACAA--AGGAGAGAGTGATA----------CAAACATGTACATTACCTTTATCAGACTTTC-AAAAA-CTCCCAAAAATTGGAG--ATAT---------------------------------------GTACGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5040495 111 +   6154872 AGCACTTCATGGAAGACTTCAGTGGAATATACAA--AGGAGAGAGTGATA----------CAAACATGTACATTACCTTTATCAGACTTTC-AAAAA-CTCCTAAAAATTGGAG--ATAT---------------------------------------GTACGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74043476 111 + 122973662 AGCACTTCATGGAAGACTTCAGTGGAATATACAA--AGGAGAGAGTGATA----------CAAACATGTACATTACCTTTATCAGACTTTC-AAAAA-CTCCCAAAAATTGGAG--CTAT---------------------------------------GTACGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29187723 112 + 172585720 AGCACTTCATGGAATACTTCAGTGGAACATACAA--AGGAGAGAGTGATA----------CAAACACGTACATTACCTTTATCAGACTTTCAAAAAA-AAACCCAAAATTGGAG--ATAT---------------------------------------GTACGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28876146 112 - 170955103 AGCACTTCATGGAATACTTCAGTGGAACATACAA--AGGAGAGAGTGATA----------CAAACACGTACATTACCTTTATCAGACTTTCAAAAAA-AAACCCAAAATTGGAG--ATAT---------------------------------------GTACGCT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1742574 111 -   2157725 AGCGTTTCATGGAATACTTCAGTGGAACATGCAA--AGGAGAGAGTGATA----------CAAACATGTACTTTACCTTTATCAGACTTTC-AAAAA-ACCCCGAAAATTGGAG--ATAT---------------------------------------GTACGCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28195703 111 -  71996105 AGCACTTCATGGAATACTTCAGTGGAACATACAA--AGGAGAAAGTGATA----------CAAACATGTACATTACCTTTATCAGACTTTC-AAAAA-ATCCCAAAAATTGGAG--ATGT---------------------------------------GTATGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1857375 111 +   2316924 AGCGCTTCATGGAATACTTCAGTGGAACATGCAA--AGGAGAGAGTGATA----------CAAACATGTACATTACCTTTATCAGACTTCC-AAAAA-ACCCCGAAAATTGGAG--ATAT---------------------------------------GTACGCT
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171328311 115 - 171630274 ACCGCCTCATGGAAGACTTCAGCGGGGTGTGCA------CGAAAGGAGTG-----ATACACATATATGCACATTACCTTTATCGGATTTTC-AAAAACCAGCAAAAAATTGGAGATCTAT---------------------------------------ACACCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            141754 121 -    375362 AGCACTTCATGGAAGACTTCAGTGGAATATACAA--AGGAGACAGAGATGCAAATATATACATATATGTATGTTACCTTTATCGGACTTTC-AAAAA-CAGCAAAAAATTGGAG--CTAT---------------------------------------ATATGCT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      145147 121 -    373274 AGCACTTCATGGAAGACTTCAGTGGAATATACAA--AGGAGACAGAGATGCAAATATATACATATATGTACGTTACCTTTATCGGACTTCC-AAAAA-CAGCAAAAAATTGGAG--ATAT---------------------------------------ATACGCT
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1481781 154 -   2232465 AGAACTTCATTGATGCCCCTCGTGGAATACACAAACAAAAGAGAGTGATA----AAAATATACATATGTGCATTACTTTGATCAAATTTGC-AAAAA-----TAAAAGTTGTAG--TTATTATATAAAGTAGCACACAAACTTTATGGCCACCGTGTAAACACACT
i otoGar3.GL873742         I 17 C 0
e aotNan1.NW_018494050v1      106353 1391 -    285216 I
e colAng1.NW_012115566v1     1725577 68584 -   3067355 I
e macNem1.NW_012011356v1     1851128 206 -   2996164 I

a score=250303.000000
s hg38.chr6_GL000254v2_alt     29126 34 +   4827813 TCTGGGATTGGCGTATAAGTGCTGTATA---AGGGAG
s panTro5.chr6              29006117 34 + 175400573 TCTGGGATTGGCGTACAAGTGCTGTATA---AGGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29249732 34 + 173848474 TCTGGGATTGGCGTACAAGTGCTGTATA---AGGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5040606 34 +   6154872 TCTGGGATTGGCGTATAAGTGCTGTATA---AGGGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74043587 34 + 122973662 TCGGGGATTGGCGTACAAGTGCTGTATA---AGGGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29187835 34 + 172585720 TCTGGGATTGGCGTGCAAGTGTTGTATA---AGGGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28876258 34 - 170955103 TCTGGGATTGGCGTGCAAGTGTTGTATA---AGGGAG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1742685 34 -   2157725 TCTGGGATTGGCGTGCAAGTGTTGTATA---AGGGAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28195814 34 -  71996105 TCTGGGATTGGCGTGCAAGTGTTGTATA---AGGGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1857486 34 +   2316924 TCTGGGATTGGCGTGCAAGTGTTGTATA---AGGGAG
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171328426 37 - 171630274 TCTAGGATTGGCATGCAAGTGCTCTGTAACGCAGAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            141875 35 -    375362 TCTGGGATTTGCGTGCAAGTGTTGTATA--GAGGGAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      145268 35 -    373274 TCTAGGATTCGCGTGCAAGTGCTGTATG--GAGGGAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      107744 34 -    285216 TCTGGGATTGGTGTGCAGGTGTTGTATA---AGGGAG
i aotNan1.NW_018494050v1   I 1391 C 0
s otoGar3.GL873742           1481935 34 -   2232465 TATGAGATCCGTGTACAAGTTTTGCATT---AGGAAG
i otoGar3.GL873742         C 0 I 17
e colAng1.NW_012115566v1     1725577 68584 -   3067355 I
e macNem1.NW_012011356v1     1851128 206 -   2996164 I

a score=173038.000000
s hg38.chr6_GL000254v2_alt     29160 33 +   4827813 TGATAATTAGGCA------GAACTCAAAAGATGCTGgct
s panTro5.chr6              29006151 33 + 175400573 TGATAATTAGGCA------GAACTCAAAAGATGCTGgct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29249766 33 + 173848474 TGATAATTAGGCA------GAACTCAAAAGATGCTGgct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5040640 33 +   6154872 TGATAATTAGGCA------GAACTCAAAAGATGCTGgct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74043621 33 + 122973662 TGATAACTAGGCA------GAACTCAAAAGATGCTGgct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29187869 33 + 172585720 TGATAATTAGGCA------GAACTCAAAAGATACCGgct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28876292 33 - 170955103 TGATAATTAGGCA------GAACTCAAAAGATACCGgct
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1742719 33 -   2157725 TGATAATTAGGCA------GAACTCAAAAGATACCGgct
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28195848 33 -  71996105 TGATAATTAGGCA------GAACTCAAAAGATACCGgct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1857520 33 +   2316924 TGATAATTAGGCA------GAACTCAAAAGATACCGgct
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171328463 32 - 171630274 TGAT-TAACGAAA------AAAAAAAGAAACGACCtgcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            141910 33 -    375362 TGATATTTAGACA------GGGCCCACAAAACACTTCCC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      145303 32 -    373274 TGATAATTAGGCA------GGGCTCACAAAACACTT-CC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      107778 33 -    285216 TGACAATTACGCA------AAAGCCAAAGGACATCtgct
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1481986 39 -   2232465 TGGTGACTGGTCATTACAGGACATTAAAATAAGTCtgcc
i otoGar3.GL873742         I 17 C 0
e colAng1.NW_012115566v1     1725577 68584 -   3067355 I
e macNem1.NW_012011356v1     1851128 206 -   2996164 I

a score=1382826.000000
s hg38.chr6_GL000254v2_alt     29193 168 +   4827813 gaaacccagggttgaaccagggaactttaagatct--tcagtctaacgctctcccaactgagctatttcagcTACTCTAAGCACACACCCTTAGTCATTTCTTCAAAATATAAAAA-CGTCATTTGTAGAGTGAGTGTAT-TTTCTAATGCCTAATTCTGTTTTGTTCAATA
s panTro5.chr6              29006184 169 + 175400573 gaaacccggggttgaaccagggaactttaagatct--tcagtctaacgctctcccaactgagcaatttcagcTACTCTAAGCACACACCCTTAGTCATTTCTTCAAAATATAAAAACCGTCATTTGTAGAGTGAGTGTAT-TTTCTAATGCCTAATTCTGTTTTGTTCAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29249799 169 + 173848474 gaaacccggggttgaaccagggaactttaagatct--tcagtctaacgctctcccaactgagcaatttcagcTACTCTAAGCACACACCCTTAGTCATTTCTTCAAAATATAAAAACCGTCATTTGTAGAGTGAGTGTAT-TTTCTAATGCCTAATTCTGTTTTGTTCAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5040673 169 +   6154872 gaaaccctgtgttgaaccagggaactttaagatct--tcagtctaaccctctcccaactgagctatttcagcTACTCTAAGCACACACCCTTAGTCATTTCTTCAAAATATAAAAACCGTCATTTGTAGAGTGAGTGTAT-TTTCTAATGCCTAATTCTGTTTTGTTCAATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74043654 167 + 122973662 gaaacccggggttgaaccagggaactttaagatct--tcagtctaacgctctcccaattgagctatttcagcTACTCTGAG--CACACCCTTAGTTATTTCTTTAAAATATAAAAACCGTCATTTGTAGAGTGAGTGTAT-TTTCTAATTCCTAATCCTGTTTTGTTCAATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29187902 171 + 172585720 gaaacccggggttgaaccagggacctttaaggtctggtcagtctaacgctctcccaattgagctatttcagcTACTCTAAGCACACACCCTTAGTCATTTCTTCAAAATATAAAAACCGTCATTTGTAGAGTGAGTGTAT-TTTCTAATGCCTAATTCTGTTTTGTTCGATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28876325 171 - 170955103 gaaacccggggttgaaccagggacctttaaggtctggtcagtctaacgctctcccaattgagctatttcagcTACTCTAAGCACACACCCTTAGTCATTTCTTCAAAATATAAAAACCGTCATTTGTAGAGTGAGTGTAT-TTTCTAATGCCTAATTCTGTTTTGTTCGATA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1742752 171 -   2157725 gaaacccggggttgaaccacggacctttaaggtctggtcagtctaacgctctcccaattgagctatttcagcTACTCTAAGCATACACCCTTAGTCATTTCTTCAAAATATAAAAACCGTCATTTGTAGAGTGAGTGTAT-TTTCTAATGCCTAATTCTGTTTTGCTCAATA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28195881 171 -  71996105 gaaacccggggttgaaccaggtacctttaagatctggtcagtctaacgctctcccaattgagctatttcagcTACTCTAAGCACACACCCTTAGTCATTTCTTCAAAATATAAAAACCGTCATTTGTAGAGTGAGTGTAT-TTTCTAATGCCTAATTCTGTTGTGTTCAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1857553 171 +   2316924 gaaacccggggttgaaccacggacctttaaggtctggtcagtctaacgctctcccaattgagctatttcagcTACTCTAAGCATACACCCTTAGTCATTTCTTCAAAATATAAAAACCGTCATTTGTAGAGTGAGTGTAT-TTTCTAATGCCTAATTCTGTTTTGCTCAATA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1794161 169 -   3067355 gaaacccgggattgaaccagggacctttaagatct--tcagtctaacgctctcccaactgagctatttcggcTGCCCAAGGATTGTTTCATTAGTCATTTCTTCAAAATGTAAAACCTGCCATTTGTAAGGTCAGTGTAT-TTTCCAGTGCCTAATTCTGTTGTCTTCAGTA
i colAng1.NW_012115566v1   I 68584 C 0
s calJac3.chr4             171328495 168 - 171630274 gaaacccgggatcgaaccagggaccttt-agatct--tcagtctaacgctctcccaactgagctatttcggcTACTCTGAAATGATTCTTTTAGCCATTGCTTCAAAACATAAAACCTGTCATTTGTAGGGTCAGTGTAT-CTTCCAATGCCTCATTCTGTTGTCTTCAATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            141943 153 -    375362 AAaaccc------------gggaccttt-agatct--tcagtctagcattctcccaactgagctatttcggcTGCTACAAACGCATCCTCTTAGTTATTTCTTCAAAATATAA---CTGTCATTTGTAGGGTGAGTGTAT-TTTCCAATGCCTAATTCTGTTTTGTTCGATA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      145335 153 -    373274 GAaaccc------------gggaccttt-agatct--tcagtctaatgttctcccaactgagctacttcggcCGTTACAAACTCACCCTCTTAGTTATTTCTTCAAAATATAA---CTGTCATTTGTAGGGTGAGTGTGT-TTTCCAATGCCTAATTCTGTTTTGTTCAATA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      107811 168 -    285216 gaaacccaggattgaaccagggacctct-aaacct--tcagtctaacactctgccacctaagctatttcagcTGCCCTGAAGATACACTTTTTGTCATTTCTTCAAAATACAGAAACTGTCATTTGTAGGGTCGGTGTAT-CTTCCAGTGCGTAGTTCTGTTGTCTTCAATA
i aotNan1.NW_018494050v1   C 0 I 1310
s otoGar3.GL873742           1482025 166 -   2232465 gaaacccgggatcgaaccagggaccttt-agatct--tcagtctaacgctctcccaactgagctatttcggcTGACATGAAGAGGTTCTTTAAGGCATTCTTTCAAAATATTAAAACTTTCATTTGTAGGGTCAGCCCATATTTCAAGTGTC---TTTTACTTTTTTCAGTA
i otoGar3.GL873742         C 0 C 0
e macNem1.NW_012011356v1     1851128 206 -   2996164 I

a score=26068.000000
s hg38.chr6_GL000254v2_alt     29361 3 +   4827813 TCa
s panTro5.chr6              29006353 3 + 175400573 TCa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29249968 3 + 173848474 TCa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5040842 3 +   6154872 TCa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74043821 3 + 122973662 TCa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29188073 3 + 172585720 TCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28876496 3 - 170955103 TCA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1742923 3 -   2157725 TCa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28196052 3 -  71996105 TCa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1857724 3 +   2316924 TCa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1794330 3 -   3067355 TCA
i colAng1.NW_012115566v1   C 0 T 67534
s calJac3.chr4             171328663 3 - 171630274 TTA
i calJac3.chr4             C 0 I 4227
s saiBol1.JH378348            142096 3 -    375362 CCa
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      145488 3 -    373274 TCa
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1482191 3 -   2232465 TCA
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      107979 1310 -    285216 I
e macNem1.NW_012011356v1     1851128 206 -   2996164 I

a score=19542.000000
s hg38.chr6_GL000254v2_alt     29364 4 +   4827813 -atac-
s panTro5.chr6              29006356 4 + 175400573 -atac-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29249971 4 + 173848474 -atac-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5040845 4 +   6154872 -atac-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74043824 4 + 122973662 -atac-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29188076 4 + 172585720 -ATAC-
i rheMac8.chr4             C 0 I 303
s macFas5.chr4              28876499 4 - 170955103 -ATAC-
i macFas5.chr4             C 0 I 303
s cerAty1.NW_012001495v1     1742926 4 -   2157725 -atac-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28196055 4 -  71996105 -atac-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1857727 4 +   2316924 -atac-
i manLeu1.NW_012104165v1   C 0 C 0
s saiBol1.JH378348            142099 4 -    375362 -atac-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      145491 4 -    373274 -atac-
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1482194 6 -   2232465 CTTGCC
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      107979 1310 -    285216 I
e calJac3.chr4             171328666 4227 - 171630274 I
e colAng1.NW_012115566v1     1794333 67534 -   3067355 T
e macNem1.NW_012011356v1     1851128 206 -   2996164 I

a score=54216.000000
s hg38.chr6_GL000254v2_alt     29368 8 +   4827813 aaaaatta
s panTro5.chr6              29006360 8 + 175400573 aaaaatta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29249975 8 + 173848474 aaaaatta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5040849 8 +   6154872 aaaaatta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74043828 8 + 122973662 aaaaatta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29188383 8 + 172585720 aaaaatta
i rheMac8.chr4             I 303 C 0
s macFas5.chr4              28876806 8 - 170955103 aaaaatta
i macFas5.chr4             I 303 C 0
s cerAty1.NW_012001495v1     1742930 8 -   2157725 aaaaatta
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28196059 8 -  71996105 aaaaatta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1857731 8 +   2316924 aaaaatta
i manLeu1.NW_012104165v1   C 0 C 0
s saiBol1.JH378348            142103 8 -    375362 aaaaatta
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      145495 8 -    373274 aaaaatta
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1482200 8 -   2232465 AAAAAATA
i otoGar3.GL873742         C 0 I 3160
e aotNan1.NW_018494050v1      107979 1310 -    285216 I
e calJac3.chr4             171328666 4227 - 171630274 I
e colAng1.NW_012115566v1     1794333 67534 -   3067355 T
e macNem1.NW_012011356v1     1851128 206 -   2996164 I

a score=746565.000000
s hg38.chr6_GL000254v2_alt     29376 151 +   4827813 gccaggggtggtggtgcgcgcctgtaatcccagctactagggaggctgaggcaggagaattgcttgaacccgggaggtggcggttgcagtaagccgagatcacgccactgcactccagactgggcgatagagggagattgtct-------------------------------------------------------------------aaaaaaaa
s panTro5.chr6              29006368 151 + 175400573 gccaggggtggtggtgcgcgcctgtaatcccagctactagggaggcggaggcaggagaattgcttgaacccgggaggtggcggttgcagtaagccgagatcacgccactgcactccagactgggcgatagagggagattgtct-------------------------------------------------------------------aaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29249983 151 + 173848474 gccaggggtggtggtgcgcgcctgtaatcccagctactagggaggcggaggcaggagaattgcttgaacccgggaggtggcggttgcagtaagccgagatcacgccactgcactccagactgggcgatagagggagattgtct-------------------------------------------------------------------aaaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5040857 151 +   6154872 gccaggggtggtggtgcgcgcctgtaatcccagctactagggaggctgaggcaggagaattgcttgaacccgggaggtggcggttgcagtaagccgagatcacgccactgcactccagactgggcgatagagggagattgtgt-------------------------------------------------------------------gaaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74043836 148 + 122973662 gccacggatggtggcgcgcgcctgtaatcccagctactagggaggctgaggcaggagaattgcttgaacccgggaggtggcggttgcagtaagccgagatcacgccactgcactccagcctgggcgatagagg--gattgtct--------------------------------------------------------------------aaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29188391 140 + 172585720 gccaggggtggtggcgcgcgcctgtaatcccagctactaggtaggctgaggcaggagaattgtttgaacccgggaggtggcggttgcagtaagccgagatcacacctctgcactccagcctgggcgatagc---agattgtcc---------------------------------------------------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28876814 215 - 170955103 gccaggggtggtggcgcgcgcctgtaatcccagctactaggtaggctgaggcaggagaattgtttgaacccgggaggtggcggttgcagtaagccgagatcacacctctgcactccagcctgggcgatagC---AGATTGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaaaaaaaaaaaaaaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1742938 143 -   2157725 gccaggggtggtggcgcgcgcctgtaatcccagctactaggtaggctgaggcaggagaattacttgaacccgggaggtggcggttgcagtaaaccgagatcacgcctctgcactccagcctgggcgatagcgagaggttgtcc---------------------------------------------------------------------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28196067 151 -  71996105 gccaggggtggtggcgcgcgcctgtaatcccagctactaggtaggctgaggcaggagaattgcttgaacccgggaggtggcggttgcagtaagccgagatcacacctctgcactccagccttggcgatagcgggagattgtct-------------------------------------------------------------------agaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1857739 151 +   2316924 gccaggggtggtggcgcgcgcctgtaatccaagctactaggtaggctgaggcaggagaattacttgaacccgggaggtggcggttgcagtaagccgagatcacgcctctgcactccagcctgggcgatagcgggaggttgtcc-------------------------------------------------------------------aaaaaaaa
i manLeu1.NW_012104165v1   C 0 T 5187
s saiBol1.JH378348            142111 151 -    375362 gccaggggtggtggcgcgcgcctgtaatcccagctcttccagaggctgaagccggagaatcccttgaacccgggaggtgaaggttgcagtgagccgagaacgcgccaccgcactcctgcctgggcaatagaggaagattgtct-------------------------------------------------------------------taaaaaaG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      145503 151 -    373274 gtcaggggtggtggcgcgcgcctgtaatccccgctcttccggaggctgaagccggagaatcgcttgaacccgggaggtggaggttgcagtgagccgagatcgtgcccctgcactcctgcctgggcaacagaggaagattgtct-------------------------------------------------------------------taaaaaac
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1482208 3160 -   2232465 I
e aotNan1.NW_018494050v1      107979 1310 -    285216 I
e calJac3.chr4             171328666 4227 - 171630274 I
e colAng1.NW_012115566v1     1794333 67534 -   3067355 T
e macNem1.NW_012011356v1     1851128 206 -   2996164 I

a score=-3804.000000
s hg38.chr6_GL000254v2_alt     29527 1 +   4827813 -t
s panTro5.chr6              29006519 1 + 175400573 -t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29250134 1 + 173848474 -t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5041008 1 +   6154872 -t
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74043984 1 + 122973662 -t
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378348            142262 1 -    375362 C-
i saiBol1.JH378348         C 0 I 1402
s cebCap1.NW_016108108v1      145654 1 -    373274 a-
i cebCap1.NW_016108108v1   C 0 I 5
e otoGar3.GL873742           1482208 3160 -   2232465 I
e aotNan1.NW_018494050v1      107979 1310 -    285216 I
e calJac3.chr4             171328666 4227 - 171630274 I
e colAng1.NW_012115566v1     1794333 67534 -   3067355 T
e manLeu1.NW_012104165v1     1857890 5187 +   2316924 T
e chlSab2.chr17             28196218 0 -  71996105 C
e cerAty1.NW_012001495v1     1743081 0 -   2157725 C
e macNem1.NW_012011356v1     1851128 206 -   2996164 I
e macFas5.chr4              28877029 0 - 170955103 C
e rheMac8.chr4              29188531 0 + 172585720 C

a score=10440.000000
s hg38.chr6_GL000254v2_alt     29528 3 +   4827813 aaa
s panTro5.chr6              29006520 3 + 175400573 aaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29250135 3 + 173848474 aaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5041009 3 +   6154872 aaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74043985 3 + 122973662 aaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29188531 3 + 172585720 aaa
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              28877029 3 - 170955103 aaa
i macFas5.chr4             C 0 I 1
s chlSab2.chr17             28196218 3 -  71996105 aca
i chlSab2.chr17            C 0 I 30
s saiBol1.JH378348            143665 3 -    375362 aaa
i saiBol1.JH378348         I 1402 C 0
s cebCap1.NW_016108108v1      145660 3 -    373274 aaa
i cebCap1.NW_016108108v1   I 5 C 0
e otoGar3.GL873742           1482208 3160 -   2232465 I
e aotNan1.NW_018494050v1      107979 1310 -    285216 I
e calJac3.chr4             171328666 4227 - 171630274 I
e colAng1.NW_012115566v1     1794333 67534 -   3067355 T
e manLeu1.NW_012104165v1     1857890 5187 +   2316924 T
e cerAty1.NW_012001495v1     1743081 0 -   2157725 C
e macNem1.NW_012011356v1     1851128 206 -   2996164 I

a score=31613.000000
s hg38.chr6_GL000254v2_alt     29531 27 +   4827813 -ttaaa----taaataaaaTAAGTGACAGGAA
s panTro5.chr6              29006523 22 + 175400573 -taaaa----taaataaa-----TGACAAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29250138 22 + 173848474 -taaaa----taaataaa-----TGACAAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5041012 27 +   6154872 -taaaa----taaataaaataaatGACAAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74043988 22 + 122973662 -taaat----aaaataaa-----TGACAAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29188535 27 + 172585720 -aaaaa----aaaaaaaaaaaaaaGACAAGAA
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              28877033 27 - 170955103 -aaaaa----aaaaaaaaaaaaaaGACAAGAA
i macFas5.chr4             I 1 C 0
s cerAty1.NW_012001495v1     1743081 18 -   2157725 --------------aaaaaaaaaagacaagaa
i cerAty1.NW_012001495v1   C 0 C 0
s saiBol1.JH378348            143668 32 -    375362 ttaaaaatttaaattaaattaaatAACTAGAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      145663 32 -    373274 ttaaaaaTttaaattaaattaaataactagaa
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1482208 3160 -   2232465 I
e aotNan1.NW_018494050v1      107979 1310 -    285216 I
e calJac3.chr4             171328666 4227 - 171630274 I
e colAng1.NW_012115566v1     1794333 67534 -   3067355 T
e manLeu1.NW_012104165v1     1857890 5187 +   2316924 T
e chlSab2.chr17             28196221 30 -  71996105 I
e macNem1.NW_012011356v1     1851128 206 -   2996164 I

a score=25520.000000
s hg38.chr6_GL000254v2_alt     29558 5 +   4827813 AAGAA
s panTro5.chr6              29006545 5 + 175400573 AAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29250160 5 + 173848474 AAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5041039 5 +   6154872 AAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74044010 5 + 122973662 AAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29188562 5 + 172585720 AAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28877060 5 - 170955103 AAGAA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1743099 5 -   2157725 aagaa
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     1852703 5 +   2316924 aagaa
i manLeu1.NW_012104165v1   T 5187 C 0
s saiBol1.JH378348            143700 5 -    375362 AAGAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      145695 5 -    373274 aagaa
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1482208 3160 -   2232465 I
e aotNan1.NW_018494050v1      107979 1310 -    285216 I
e calJac3.chr4             171328666 4227 - 171630274 I
e colAng1.NW_012115566v1     1794333 67534 -   3067355 T
e chlSab2.chr17             28196221 30 -  71996105 I
e macNem1.NW_012011356v1     1851128 206 -   2996164 I

a score=181537.000000
s hg38.chr6_GL000254v2_alt     29563 36 +   4827813 AGAAAAGAAGGATCTCTTATGTCCTCCAGTACATTC
s panTro5.chr6              29006550 36 + 175400573 AGAAAAGAAGGATCTCTTATGTCCTCCAGTACATTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29250165 36 + 173848474 AGAAAAGAAGGATCTCTTATGTCCTCCAGTACATTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5041044 36 +   6154872 AGAAAAGAAGGATCTCTTATGTCCTCCAGTACATTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74044015 36 + 122973662 AGAAAAGAAGGATCTCTTACGTCCTCCAGTACATTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29188567 31 + 172585720 -----AGAAAGATCTCTTATGTCCTCCAGTACATTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28877065 31 - 170955103 -----AGAAAGATCTCTTATGTCCTCCAGTACATTC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1743104 31 -   2157725 -----agaaaGATCTCTTATGTCCTTCAGTACATTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28196251 36 -  71996105 aagaaagaaGGATCTCTTATGTCCTCCAGTACATTC
i chlSab2.chr17            I 30 C 0
s manLeu1.NW_012104165v1     1852708 36 +   2316924 aagaaagaaaGATCTCTTATGTCCTCCAGTACATTC
i manLeu1.NW_012104165v1   C 0 C 0
s saiBol1.JH378348            143705 36 -    375362 AGAAAAGTAGGATCTCTCATGTCCTCCAGTATATTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      145700 36 -    373274 agtaaagtaGGATCTCTCAAGTCCTCCAGTACATTT
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1482208 3160 -   2232465 I
e aotNan1.NW_018494050v1      107979 1310 -    285216 I
e calJac3.chr4             171328666 4227 - 171630274 I
e colAng1.NW_012115566v1     1794333 67534 -   3067355 T
e macNem1.NW_012011356v1     1851128 206 -   2996164 I

a score=36192.000000
s hg38.chr6_GL000254v2_alt     29599 5 +   4827813 TATCT
s panTro5.chr6              29006586 5 + 175400573 TATCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29250201 5 + 173848474 TATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5041080 5 +   6154872 TATCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74044051 5 + 122973662 TATCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29188598 5 + 172585720 TATCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28877096 5 - 170955103 TATCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1851334 5 -   2996164 TATCT
i macNem1.NW_012011356v1   I 206 C 0
s cerAty1.NW_012001495v1     1743135 5 -   2157725 TATCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28196287 5 -  71996105 TATCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1852744 5 +   2316924 TATCT
i manLeu1.NW_012104165v1   C 0 C 0
s saiBol1.JH378348            143741 5 -    375362 TATCT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      145736 5 -    373274 TATCT
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1482208 3160 -   2232465 I
e aotNan1.NW_018494050v1      107979 1310 -    285216 I
e calJac3.chr4             171328666 4227 - 171630274 I
e colAng1.NW_012115566v1     1794333 67534 -   3067355 T

a score=394033.000000
s hg38.chr6_GL000254v2_alt     29604 59 +   4827813 CTTCCTTAGAGTTTTTAAAATTGTGGTCTCCACACTGGTGCATAACAACt-cttttttgt
s panTro5.chr6              29006591 59 + 175400573 CTTCCTTAGAGTTTTTAAAATTGTGGTCTCCACACTGGTGCATAACAACt-cttttttgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29250206 59 + 173848474 CTTCCTTAGAGTTTTTAAAATTGTGGTCTCCACACTGGTGCATAACAACt-cttttttgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5041085 59 +   6154872 CTTCCTTAGAGTTTTTAAAATTGTGGTCTCCACACTGGTGCATAACAAAA-Cttttttgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74044056 59 + 122973662 CTTCCTTAGAGTTTTTAAAATTGTGGTCTGCACATTGGTGCATAACAACT-Cttttttgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29188603 59 + 172585720 CTTCCTTAGAGTTTTTAAAATTGTGTTCTGCACCCCGGTGCATAACAACC-Cttttttgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28877101 59 - 170955103 CTTCCTTAGAGTTTTTAAAATTGTGTTCTGCACCCCGGTGCATAACAACC-Cttttttgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1851339 59 -   2996164 CTTCCTTAGAGTTTTTAAAATTGTGTTCTGCACCCCGGTGCATAACAACC-Cttttttgt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1743140 59 -   2157725 CTTCCTTAGAGTTTTAAAAATTGTGTTCTGTGCCCCGGTGCATAACAACt-cttttttgt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28196292 59 -  71996105 CTTCGTTAGAGTTTTTAAAATTGTGTTCTGCACCCTGGTGCATAACAACt-cttttttgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1852749 59 +   2316924 CTTCCTTAGAGTTTTAAAAATTGTGTTCTGTACCCCGGTGCATAACAACt-cttttttgt
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171332893 59 - 171630274 cTTTCTTAGGGTTTTTTAAACTGTGGTCTGCACACTGGTGTATAATAACT-GTTTTCAGT
i calJac3.chr4             I 4227 I 5994
s saiBol1.JH378348            143746 60 -    375362 CTTCCTTACAGTTTTAAAAATTGTGGTCTGCCCACTGGTGCACAACAACTGGTTGTCTGt
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      145741 60 -    373274 CTTCCTTAGAGTTTTAAAAATTGTGGTCTGCCCACTGGTGCATAACAACTGGTTTACTGt
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1482208 3160 -   2232465 I
e aotNan1.NW_018494050v1      107979 1310 -    285216 I
e colAng1.NW_012115566v1     1794333 67534 -   3067355 T

a score=565605.000000
s hg38.chr6_GL000254v2_alt     29663 91 +   4827813 tgt---tgttttcg-agacagggtcccgctctgttgcgtgggctggagtgcagtggtgcaatctcggctcgcggcaacttctgcctccccggctc
s panTro5.chr6              29006650 91 + 175400573 tgt---tgttttcg-agacagggtcccgctctgttgcgtggactggagtgcagtggtgcaatctcggctcgcggcaacttctgcctccccggctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29250265 91 + 173848474 tgt---tgttttcg-agacagggtcccgctctgttgcgtggactggagtgcagtggtgcaatctcggctcgcggcaacttctgcctccccggctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5041144 91 +   6154872 tgt---tgttttcg-agacagggtcccgctctgttgcgtgggctggagtgcagtggtgcaatctcggctcgcggcaacttctgcctccccggctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74044115 91 + 122973662 tgt---tgttttcg-agacagggtcccgctctgttgcctaggctggagtgcagtggtgcaatctcggctcgcggcaacctctgcctccccggctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29188662 94 + 172585720 tgttgctgttttcg-agacagggtcccgctctgttgcctaggctgcagtgcagtggtgcaatctcggctcgctgcaacctctaccttcccggctc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28877160 94 - 170955103 tgttgctgttttcg-agacagggtcccgctctgttgcctaggctgcagtgcagtggtgcaatctcggctcgctgcaacctctaccttcccggctc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1851398 94 -   2996164 tgttgctgttttcg-agacagggtcccgctctgttgcctaggctgcagtgcagtggtgcaatctcggctcgctgcaacctctacctccccggctc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1743199 94 -   2157725 tgttgttgttttcg-agccagggtcccgctctgttgcctaggctgcagtgcagtggtgcaatctcggctcgctgcaacctctacctccccggctc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28196351 94 -  71996105 tgttgttgttttcg-agacagggtcccgctctgttgcctaggctggagtgcagtggtgcaatctcggcttgctacaacctctacctccgcggctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1852808 94 +   2316924 tgttgttgttttcg-agccagggtcccgctctgttgcctaggctgcagtgcagtggtgcaatctcggctcgctgcaacctctacctccccggctc
i manLeu1.NW_012104165v1   C 0 C 0
s saiBol1.JH378348            143806 89 -    375362 -----ttgtttttgaagacagggtcctgctctcttgcccaggctggagtgcagtggtgcaatctcggctcgctgcaac-tctgcctccccagctc
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      145801 89 -    373274 -----ttgtttttggagacagggtcctgctctgttgccccggctggagtgcagtggtgcaatctcggctccctgcaac-tctgcctccccagctc
i cebCap1.NW_016108108v1   C 0 I 27
e otoGar3.GL873742           1482208 3160 -   2232465 I
e aotNan1.NW_018494050v1      107979 1310 -    285216 I
e calJac3.chr4             171332952 5994 - 171630274 I
e colAng1.NW_012115566v1     1794333 67534 -   3067355 T

a score=109456.000000
s hg38.chr6_GL000254v2_alt     29754 21 +   4827813 agtggatcctcccacttcaac
s panTro5.chr6              29006741 21 + 175400573 agtggatcctcccacttcaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29250356 21 + 173848474 agtggatcctcccacttcaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5041235 21 +   6154872 agtggatcctcccacttcaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74044206 21 + 122973662 aatggatcctccgacttcaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29188756 21 + 172585720 aatcgatcctcccacttcaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28877254 21 - 170955103 aatcgatcctcccacttcaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1851492 21 -   2996164 aatcgatcctcccacttcaac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1743293 21 -   2157725 aatcgatcctcccacttcaac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28196445 21 -  71996105 aatcgatcctcccactttaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1852902 21 +   2316924 aatcgatcctcccacttcaac
i manLeu1.NW_012104165v1   C 0 C 0
s saiBol1.JH378348            143895 21 -    375362 cattgatcctcctaccccaac
i saiBol1.JH378348         C 0 I 4
e otoGar3.GL873742           1482208 3160 -   2232465 I
e aotNan1.NW_018494050v1      107979 1310 -    285216 I
e cebCap1.NW_016108108v1      145890 27 -    373274 I
e calJac3.chr4             171332952 5994 - 171630274 I
e colAng1.NW_012115566v1     1794333 67534 -   3067355 T

a score=90098.000000
s hg38.chr6_GL000254v2_alt     29775 19 +   4827813 ggagggagagggagtctcg
s panTro5.chr6              29006762 19 + 175400573 GGAGGgagagggagtctcg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29250377 19 + 173848474 GGAGGgagagggagtctcg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5041256 19 +   6154872 GGAGGgagagggagtctcg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74044227 19 + 122973662 TGAGGgagagggagtctcg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29188777 19 + 172585720 cgagggagagggagtctcg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28877275 19 - 170955103 cgagggagagggagtctcg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1851513 19 -   2996164 cGAGGgagagggagtctct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1743314 19 -   2157725 cgagggagagggagtctcg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28196466 19 -  71996105 cgagggagagggagtctgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1852923 19 +   2316924 cGAGGgagagggagtctcg
i manLeu1.NW_012104165v1   C 0 C 0
e saiBol1.JH378348            143916  4 -    375362 I
e otoGar3.GL873742           1482208 3160 -   2232465 I
e aotNan1.NW_018494050v1      107979 1310 -    285216 I
e cebCap1.NW_016108108v1      145890 27 -    373274 I
e calJac3.chr4             171332952 5994 - 171630274 I
e colAng1.NW_012115566v1     1794333 67534 -   3067355 T

a score=457543.000000
s hg38.chr6_GL000254v2_alt     29794 83 +   4827813 ctctgtcgcccaggctggagtacagcggcgcggagtagctgggattacaggcgcgcgccaccacccctggctaatttttgtgt
s panTro5.chr6              29006781 83 + 175400573 ctctgtcgcccaggctggagtacagcggcgcggagtagctgggattacaggcgcgcgccaccacccctggctaatttttgtgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29250396 83 + 173848474 ctctgtcgcccaggctggagtccagcggcgcggagtagctgggattacaggcgcgcgccaccacccctggctaatttttgtgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5041275 83 +   6154872 ctctgtcgcccaggctggagtacagcggcgcggagtagctgggattacaggcgcgcgccaccacccctggctaatttttgtgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74044246 83 + 122973662 ctctgtcgtccaggctggagaacagcggcgcggagtagctgggattacaggcgcgcgccaccacccctggctaatttttgtat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29188796 83 + 172585720 ctctgtcgcccaggctggagtacaacggcgcggagtagctgggattacaggcgcgcgccaccacccctggctaatttttgtat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28877294 83 - 170955103 ctctgtcgcccaggctggagtacaacggcgcggagtagctgggattacaggcgcgcgccaccacccctggctaatttttgtat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1851532 83 -   2996164 ctctgtcgcccaggctggagtacaacggcgcggagtagctgggattacaggcgcgcgccaccatccctggctaatttttgtat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1743333 83 -   2157725 ctctggcgcccaggctggagtacaacggcgcggagtagctgggattacaggcgcgcaccactacccctggctaatttttgtat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28196485 83 -  71996105 ctctgtcgcccaggctggagtacaacggcgcggagtagctgggattacaggcgcgtgccaccacccctggctaatttttgtat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1852942 83 +   2316924 ctctggcgcccaggctggagtacaacggcgcggagtagctgggattacaggcgcgcaccactacccctggctaatttttgtat
i manLeu1.NW_012104165v1   C 0 C 0
s saiBol1.JH378348            233207 56 +    375362 ctct---------------------------ggaagagctgggattacaggcgcgcgccaccacccctggctaatttttgtat
i saiBol1.JH378348         n 4 C 0
e otoGar3.GL873742           1482208 3160 -   2232465 I
e aotNan1.NW_018494050v1      107979 1310 -    285216 I
e cebCap1.NW_016108108v1      145890 27 -    373274 I
e calJac3.chr4             171332952 5994 - 171630274 I
e colAng1.NW_012115566v1     1794333 67534 -   3067355 T

a score=1377695.000000
s hg38.chr6_GL000254v2_alt    29877 258 +   4827813 tGATATTGAACAAAAAAGAATTAGGCATTAGGAAATACGCCCACTTTACAAATGAAGATTTTTATATTTTGAAGAAATTGCTAACGGCACGTGCTTAGAGTAgccaaaattgctcagttgggagagcgttagactgaagatctaaaggtccctggttcgatcccgggtttcACCAGGTTTGTTTG----GTTTTTTTAGTTCTGCCTAATTATCACTC---CCTTATACAACACTTGCACGCCAATCCCAGAAGTGTATATATCT
s panTro5.chr6             29006864 259 + 175400573 tGATATTGAACAAAAAAGAATTAGGCATTAGGAAATACGCCCACTTTACAAATGAAGATTTTTATATTTTGAAGAAATTGCTAACGGCACGTGCTTACAGTAgtcgaaatagctcagttgggagagcattagactgaagatctaaaggtccctggttcgatcccgggtttcagcaGGTTTGTTTGT---TTTTTTTTAGTTCTGCCTAATTATCACTC---CCTTATACAACACTTGCACGCCAATCCCAGAAGTGTATATATCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29250479 262 + 173848474 tGATACTGAACAAAAAAGAATTAGGCATTAGGAAATACGCCCACTTTACAAATGAAGATTTTTATATTTTGAAGAAATTGCTAACGGCACGTGCTTACAGTAgccgaaatagctcagttgggagagcattagactgaagatctaaaggtccctggttcgatcccgggtttcagcaGGTTTGTTTGTTTGTTTTTTTTAGTTCTGCCTAATTATCACTC---CCTTATACAACACTTGCAAGCCAATCCCAGAAGTGTATATATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5041358 253 +   6154872 tGATATTGAACAAAAAAG-ATTAGGCATTAGGAAATACGCCCACTTTACAAATGAAGATTTTTATATTTTGAAGAAACTGCTAACGACCTTTGCTTACAGTAgccgaaatagctcagttgggagagcgttagactgaaca--------tccttggttcgatcccgggtttcagcaGGTTGGTTTGTTTGCTTTTTTTAGTTCTGCCTAATTATCACTC---CCTTATACAACACTTGCACGCCAATCCCAGAAGTGTATATATCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74044329 258 + 122973662 tGATATTGAACAAAAAAGAATTAGGCCTTAGGAAATACACTCACTTTACAAATGAAGATTTTTATATTTTGAAGAAATTGCTAGCAGTAAGTACTCACAGTAgccgaaatagctcagttgggagagcgttagactgaagatctaaaggtccctggttcgatcccgggtttcggcaGGCTTTTTTT----TTTATTTTAGTTCTGCCTAATTATCACGC---CCTTATACAACACTTGCACGCCAACCCCAGAAGTGTATATATCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29188879 254 + 172585720 tGATACTGAACAAAAAAGAATTAGGCATTAGAAAATACACTCACTTTACAAATGAAGGTTTTTATATTTTGAAGAAATAACTAAAGGTATGTTTACGGAGTAgccgaaatagctcagttgggagagcgttagactgaagatctaaaggtccctggttcgatcccgggtttcggcaGCTTATTTTG--------TTGTTGTTCTGCCTAATTATCATTC---CCTTATACAACACTTGCACGCCAATCCCAGAAATGTATATATCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             28877377 254 - 170955103 tGATACTGAACAAAAAAGAATTAGGCATTAGAAAATACACTCACTTTACAAATGAAGGTTTTTATATTTTGAAGAAATAACTAAAGGTATGTTTACGGAGTAgccgaaatagctcagttgggagagcgttagactgaagatctaaaggtccctggttcgatcccgggtttcggcaGCTTATTTTG--------TTGTTGTTCTGCCTAATTATCATTC---CCTTATACAACACTTGCACGCCAATCCCAGAAATGTATATATCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    1851615 254 -   2996164 tGATACTGAACAAAAAAGAATTAGGCATTAGAAAATACACTCACTTTACAAATGACGGGTTTTATATTTTGAAGAAATAACTAAAGGTATGTTTACGGAGTAgccgaaatagctcagttgggagagcgttagactgaagatctaaaggtccctggttcgatcccgggtttcggcaGTTTATTTTG--------TTGTTGTTCTGCCTAATTATCATTC---CCTTATACAACACTTGCACGCCAATCCCAGAAATGTATATATCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1    1743416 251 -   2157725 tGATACTGAACAAAAAAGAATTAAGCATTAGAAAATACACTCACTTTACAAATGACAGTTTTTATATTTTGAAGAAATAACTAAAGGTGCGTTTACAGAGGAgccgaaatagctcagttgggagagcgttagactgaagatctaaaggtccctggttcgatcccgggtttcggcaGCTTCTT-----------TTGTTGTTTTGCCTAATTATCACTC---CCTTATACAACACTTGCATGCCAATCCCAGAAATGTATATATCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17            28196568 251 -  71996105 tGATATTGAACAAAAAAGAATTAGGCATTAGAAAATACACTCACTCTACGAATGACAGTTTTTATATTTTGAAGAAATAGCTAAAGGGGCGTTTACGGAGTAgccgaaatagctcagttgggagagcgttagactgaagatctaaaggtccctggttcgatcccgggtttcggcaGTTTCTT-----------TTGTTGTTCTGCCTAATTATCACTC---CCTTATACAACACTTGCACGCCAATCCCAGAAATGTATATATCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1    1853025 251 +   2316924 tGATACTGAACAAAAAAGAATTAAGCATTAGAAAATACACTCACTTTACAAATGACAGTTTTTATATTTTGAAGAAATAACTAAAGGTGCGTTTACAGAGGAgccgaaatagctcagttgggagagcgttagactgaagatctaaaggtccctggttcgatcccgggtttcggcaGCTTCTT-----------TTGTTGTTCTGCCTAATTATCACTC---CCTTATACAACACTTGCATGCCAATCCCAGAAATGTATATATCT
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4               301608 253 + 171630274 TAATATTGAAGACAACAGAATGAGGCATTGGAAGATACACTGACCCTACAAATGACAGGTTTTATGTTTTGAAGCAATGGCTAAAAGAATCATTTCAGAGTAgccgaaatagctcagttgggagagcgttagactgaagatctaaaggtccctggttcgatcccgggtttcggcaGGTCGTT-----------TCTTTTTTTTTTCGTTA-ATCAGTTCTGCGTTACAGAGCACTTGCATGCCAATCCTAGAAGGGTGTATAGAT
i calJac3.chr4             n 5994 C 0
s saiBol1.JH378348           233263 237 +    375362 tGGTATCGAACAAAACAGAATTAGGCATTGGAAAATACACTCACCCTACAAATGACAG---TTATATTTTGAAGAAATAACTAAGAGGATGCGTTTGTAGCAgccgaaatagctcagttgggagaatgctagactgaagatctaaagg------------tcccgggttTTGGGAAGTGTTT-----------TGTGGGCCCTGTCTAAATATCATTCC--CTCTATACAACACTTGCACGCAAATCCCAGAAGCATATATAGCT
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742          1482208 3160 -   2232465 I
e aotNan1.NW_018494050v1     107979 1310 -    285216 I
e cebCap1.NW_016108108v1     145890  27 -    373274 I
e colAng1.NW_012115566v1    1794333 67534 -   3067355 T

a score=9100.000000
s hg38.chr6_GL000254v2_alt    30135 1 +   4827813 C
s panTro5.chr6             29007123 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29250741 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5041611 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74044587 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29189133 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             28877631 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    1851869 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1    1743667 1 -   2157725 C
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17            28196819 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1    1853276 1 +   2316924 C
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4               301861 1 + 171630274 C
i calJac3.chr4             C 0 T 4472
s saiBol1.JH378348           233500 1 +    375362 C
i saiBol1.JH378348         C 0 T 18492
s otoGar3.GL873742          1485368 1 -   2232465 C
i otoGar3.GL873742         I 3160 C 0
e aotNan1.NW_018494050v1     107979 1310 -    285216 I
e cebCap1.NW_016108108v1     145890 27 -    373274 I
e colAng1.NW_012115566v1    1794333 67534 -   3067355 T

a score=6187.000000
s hg38.chr6_GL000254v2_alt    30136 2 +   4827813 AA
s panTro5.chr6             29007124 2 + 175400573 AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29250742 2 + 173848474 AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5041612 2 +   6154872 AA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74044588 2 + 122973662 AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29189134 2 + 172585720 AG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             28877632 2 - 170955103 AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    1851870 2 -   2996164 AG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1    1743668 2 -   2157725 AG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17            28196820 2 -  71996105 AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1    1853277 2 +   2316924 AG
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742          1485369 2 -   2232465 AT
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348           233501 18492 +    375362 T
e aotNan1.NW_018494050v1     107979 1310 -    285216 I
e cebCap1.NW_016108108v1     145890 27 -    373274 I
e calJac3.chr4               301862 4472 + 171630274 T
e colAng1.NW_012115566v1    1794333 67534 -   3067355 T

a score=3307.000000
s hg38.chr6_GL000254v2_alt     30138 3 +   4827813 TAT
s panTro5.chr6              29007126 3 + 175400573 TAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29250744 3 + 173848474 TAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5041614 3 +   6154872 TAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74044590 3 + 122973662 TAT
i nomLeu3.chr1a            C 0 I 3
s rheMac8.chr4              29189136 3 + 172585720 TAT
i rheMac8.chr4             C 0 I 3
s macFas5.chr4              28877634 3 - 170955103 TAT
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1     1851872 3 -   2996164 TAT
i macNem1.NW_012011356v1   C 0 I 3
s cerAty1.NW_012001495v1     1743670 1 -   2157725 T--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28196822 3 -  71996105 TAT
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012104165v1     1853279 1 +   2316924 T--
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171338946 3 - 171630274 tAG
i calJac3.chr4             I 5994 C 0
s otoGar3.GL873742           1485371 3 -   2232465 TAG
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            233501 18492 +    375362 T
e aotNan1.NW_018494050v1      107979 1310 -    285216 I
e cebCap1.NW_016108108v1      145890 27 -    373274 I
e colAng1.NW_012115566v1     1794333 67534 -   3067355 T

a score=12732.000000
s hg38.chr6_GL000254v2_alt     30141 2 +   4827813 AA
s panTro5.chr6              29007129 2 + 175400573 AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29250747 2 + 173848474 AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5041617 2 +   6154872 AA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74044596 2 + 122973662 AA
i nomLeu3.chr1a            I 3 C 0
s rheMac8.chr4              29189142 2 + 172585720 AA
i rheMac8.chr4             I 3 C 0
s macFas5.chr4              28877640 2 - 170955103 AA
i macFas5.chr4             I 3 C 0
s macNem1.NW_012011356v1     1851878 2 -   2996164 AA
i macNem1.NW_012011356v1   I 3 C 0
s chlSab2.chr17             28196828 2 -  71996105 AA
i chlSab2.chr17            I 3 C 0
s colAng1.NW_012115566v1     1726799 2 -   3067355 AA
i colAng1.NW_012115566v1   T 67534 C 0
s calJac3.chr4             171338949 2 - 171630274 AA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            143920 2 -    375362 AG
i saiBol1.JH378348         I 4 C 0
s otoGar3.GL873742           1485374 2 -   2232465 AA
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      107979 1310 -    285216 I
e cebCap1.NW_016108108v1      145890 27 -    373274 I
e manLeu1.NW_012104165v1     1853280 0 +   2316924 C
e cerAty1.NW_012001495v1     1743671 0 -   2157725 C

a score=471232.000000
s hg38.chr6_GL000254v2_alt     30143 65 +   4827813 ATTCTTACGTTAAGTCAAAAGTGTAAAAACATTGAACTTCTCTGGTTAGACAT---AGGAACAAATTC
s panTro5.chr6              29007131 65 + 175400573 ATTCTTACGTTAAGTCAAAAGTGTAAAAACATTGAACTTCTCTGGTTAGACAT---AGGAACAAATTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29250749 65 + 173848474 ATTCTTACGTTAAGTCAAAAGTGTAAAAACATTGAACTTCTCTGGTTAGACAT---AGGAACAAATTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5041619 65 +   6154872 ATTCTTACGTTAAGTCAAAAGTGTAAAAACATTGAACTTCTCTGGTTAGACAT---AGGAACAAATTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74044598 65 + 122973662 ATTCTTACGTTAAGTCAAAAGTTGAAAAACATTGGACTTCTTTGCTTAGACGT---AGAAACAAATTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29189144 65 + 172585720 ATTCTTTCGTTAAGTCAAAAGTGGAAAAACATTGGACTTCTCTGCTTAGACAG---ACAAACAAATTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28877642 65 - 170955103 ATTCTTTCGTTAAGTCAAAAGTGGAAAAACATTGGACTTCTCTGCTTAGACAG---ACAAACAAATTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1851880 61 -   2996164 ATTCTTTCGTTAAGTCAAAAGTGGAAAAACATTGGACTTCTCTGCTTAGACAG-------ACAAATTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1743671 65 -   2157725 ATTCTTTCGTTAAGTCAAAAGTGGAAAAACATTGGACTTCTCTGCTTAGACAG---AGAAACAAATTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28196830 61 -  71996105 ATTCTTTCGTTAAGTCAAAAGTGGAAAAACATTGGACTTCTCTGCTT----AG---AGAAACAAATTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1853280 65 +   2316924 ATTCTTTCGTTAAGTCAAAAGTGGAAAAACATTGGACTTCTCTGCTTAGACAG---AGAAACAAATTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1726801 65 -   3067355 ATTCTTTCGTTAAGTCAAAAGTGGGAAAACGTTGGACTTCTCTGCCTAGACAG---ACAAACAAATTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171338951 63 - 171630274 ATTCTTAGATGAATTCAAAAGTGCCAAGGCATTGGACTT-----GTTAAATAATGAGGAAACAATTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            143922 68 -    375362 ATTCTCATATTAAGTCAAAAGGGCCAAGACATTGGACTTCTCTGCTTAGACATTATAGAAACAAATTC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      145917 68 -    373274 ATTCTTATATCAAGTCAAAAGTGCCAAGACATTGGACTTGTCTGCTTAGACATTATAGATACAAATTC
i cebCap1.NW_016108108v1   I 27 C 0
s otoGar3.GL873742           1485376 57 -   2232465 ATTCTTATATCAATTAGAAAGTGCCAAGATTTTA-----------TTAAGTAATATAGAAACAGTTTC
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      107979 1310 -    285216 I

a score=1297925.000000
s hg38.chr6_GL000254v2_alt     30208 128 +   4827813 AGATGTTTACAGAATTTCGGAAACAACCCTCTCTGGAATGAGAAAATTGCTGAGGCCGACGATGATTTGCAAACTGAATTTTAATAAAACCTTTTCTATGTCTTAACAGTTTTCAAACTCAATCTC-----CT
s panTro5.chr6              29007196 133 + 175400573 AGATGTTTACAGAATTTCGGAAACAACCATCTCTGGAATGAGAAAATTGCTGAGGCCGACGATGACTTGCAAACTGAATTTTAATAAAACCTTTTCTATGTCTTAACAGTTTTCAAACTCAATCTCCTGTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29250814 133 + 173848474 AGATGTTTACAGAATTTCGGAAACAACCCTCTCTGGAATGAGAAAATTGCTGAGGCCGACGATGACTTGCAAACTGAATTTTAATAAAACCTTTTCTATGTCTTAACAGTTTTCAAACTCAATCTCCTGTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5041684 128 +   6154872 AGATGTTTACAGAATTTCGGAAACAACCCTCTCTGGAATGAGAAAATTGCTGAGGCCGACGACGACTTGCAAACTGAATTTTAATAAAACCTTTTCTATGTCTTAACAGTTTTCAAACTCAATCTC-----CT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74044663 133 + 122973662 AGAGGTTTACAGAATTTCAGAAACAACCCTCTCTGGAATGAGAAAATTGCTGAGGCCAACGATGACTTGCAAACTGAATTTTAATAAAACCTTTTCTATGTCTTAACAGTTTTCAAACTCAATCTCCTATTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29189209 133 + 172585720 AGAGGTTTACAGAATTTCAGAAACAACCCTCTCTGGAATGAGGAAATTGCTGAGGCCGACGATGACTTGCAAACTGAATTTTAATAAAACCTTTTCTATGTCTTAACAGTTTTCAAACTCAGTCTCCTATTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28877707 133 - 170955103 AGAGGTTTACAGAATTTCAGAAACAACCCTCTCTGGAATGAGGAAATTGCTGAGGCCGACGATGACTTGCAAACTGAATTTTAATAAAACCTTTTCTATGTCTTAACAGTTTTCAAACTCAGTCTCCTATTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1851941 133 -   2996164 AGAGGTTTACAGAATTTCAGAAACAACCCTCTCTGGAATGAGGAAATTGCTGAGGCCGACGATGACTTGCAAACTGAATTTTAATAAAACCTTTTCTATGTCTTAACAGTTTTCAAACTCAGTCTCCTATTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1743736 133 -   2157725 AGAGGTTTACAAAATTTCAGAAACAACCCTCTCTGGAATGAGGAAATTGCTGAGGCCGACAATGACTTGCAAACTGAATTTTAATAAAACCCTTTCTATGTCTTAACAGTTTTCAAACTCAGTCTCCTATTCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28196891 133 -  71996105 AGAGGTTTACAGAATTTCAAAAACAACCCTCTCTGGAATGAGGAAATTGCTGAGGCCGACGATGACTTGCAAACTGAATTTTAATAAAACCCTTTCTATGTCTTAACAGTTTTCAAACTCAGTCTCCTATTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1853345 133 +   2316924 AGAGGTTTACAGAATTTCAGAAACAACCCTCTCTGGAATGAGGAAATTGCTGAGGCCGACAATGACTTGCAAACTGAATTTTAATAAAACCCTTTCTATGTCTTAACAGTTTTCAAACTCAGTCTCCTATTCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1726866 133 -   3067355 AGAGGTTTACAGAATTTCAGAAACAACCCTCTCTGGAATGAGGAAATTGTTGAGGCCGACGATGACTTGCAAACTGAATTTTAATAAAACCCTTTCTATGTCTTAACAGTTTTCAAACTCAGTCTCCTATTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339014 128 - 171630274 GGACGTTTACAGAGTTTCAGAAACAACTCTCTGTGGAATGAGGAAACTGCTGCAGCTGGCGACGACTTGCAAACTGAATTTTAATAAAACCGTCCCTATGTTCGGATACTTTACAAACTCAGTCTCCT-----
i calJac3.chr4             C 0 I 7
s saiBol1.JH378348            143990 127 -    375362 AGAGGTCTGCAGAATTTCAGAAACAACTCTCTGTGGAATGGGGAAATTGCTTAGGCCTAGGA-GTCCTGCAGACTGAATTTTAATAAAACTCTTCCTATGTCCTAACAGATTTCAAACTCAGTCCCCT-----
i saiBol1.JH378348         C 0 I 7
s cebCap1.NW_016108108v1      145985 126 -    373274 AGAGGTCTACAGAA-TTCAGAAACAACTCTCTGTGGAATGGGGAAATTGCTTAGGCCAAGGA-GTTCTGCAAGCTGAATTTTAATAAAGCTCTTCCTATGTCTTAACAGTTTTCAAACTCAGTCTCCT-----
i cebCap1.NW_016108108v1   C 0 I 7
s aotNan1.NW_018494050v1      109289 127 -    285216 AGACGTTTACAGAATTTCAGAAACAATCCTCTCCGGAATGAGGAAAA-GCTGCGGCCAACGACGACTTGCAAACTGAATTTTAATAAAACCGTCCCTATGTCTGGATAGTTTTCCAACTCGGTCTCCT-----
i aotNan1.NW_018494050v1   I 1310 I 170
s otoGar3.GL873742           1485433 122 -   2232465 AGAGGTTTTCAGAATTTCAGAAACAGTCCTCTATGAAATGAG--AATAGCTGTGGCCAACTATGACTTACAAAGTGAATTTTGACAAAACCCT--CCATGCCTGGACAGTTTTCAAACT--GTCTCTT-----
i otoGar3.GL873742         C 0 C 0

a score=800026.000000
s hg38.chr6_GL000254v2_alt     30336 94 +   4827813 ------GAGAGTCGAGGCTTTCTATTTTTAGCCAAAATACGGTGGGAGGGTCAATTAGGATAT--ATTTTTCAATTATTTCCT-CAAAAAAAGTTTTAGATTC
s panTro5.chr6              29007329 93 + 175400573 ------GAGAGTCGAGGCTTTCTATTTTTAGCCAAAATACGGTGGGAGGGTCAATTAGGATAT---TTTTTCAATTATTTCCT-CAAAAAAAGTTTTAGATTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29250947 93 + 173848474 ------GAGAGTCGAGGCTTTCTATTTTTTGCCAAAATACGGTGGGAGGGTCAATTAGGATAT---TTTTTCAATTATTTCCT-CAAAAAAAGTTTTAGATTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5041812 94 +   6154872 ------GAGAGTCGAGGCTTTCTATTTTTAGCCAAAATACGGTGGGAGGGTCAATTAGGATAT--ATTTTTCAATTATTTCCT-CAAAAAAAGTTTTAGATTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74044796 94 + 122973662 ------GAGAGTCGAGGCTTTCTATTTTTAGCCAAAATTTGGTGGGAGGGTCAATTAGGATAT--ATTTTTCGATTATTTCCT-CAAAAAAAGTTTTAGATTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29189342 94 + 172585720 ------GAGAGTCGAGGCTTTTTATTTTTAGCCAAAATATGGTGGGAGGGTCAATTAGGATAT--GTTTTTCGATGATTTCCT-CAAAAAAAGTTTTAGATTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28877840 94 - 170955103 ------GAGAGTCGAGGCTTTTTATTTTTAGCCAAAATATGGTGGGAGGGTCAATTAGGATAT--GTTTTTCGATGATTTCCT-CAAAAAAAGTTTTAGATTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1852074 94 -   2996164 ------GAGAGTCGAGGCTTTTTATTTTTAGCCAAAATATGGTGGGAGGGTCAATTAGGATAT--GTTTTTCGATGATTTCCT-CAAAAAAAGTTTTAGATTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1743869 94 -   2157725 ------GAGAGTCGAGGCTTTTTATTTTTAGCCAATATATGGTGGGAGGGTCAATTAGGATAT--GTTTTTCGATGATTTCCT-CAAAAAAAGTTTTAGATTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28197024 94 -  71996105 ------GAGAGTCGAGGCTTTTTATTTTTAGCCAAAATACAGTGGGAGGGTCAATTAGGATAC--GTTTTTCGATGATTTCCT-CAAAAGAAGTTTTAGATTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1853478 94 +   2316924 ------GAGAGTCGAGGCTTTTTATTTTTAGCCAATATATGGTGGGAGGGTCAATTAGGATAT--GTTTTTCGATGATTTCCT-CAAAAAAAGTTTTAGATTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1726999 94 -   3067355 ------GAGAGTCGAGGCTTTTTATTTTTAGCCAAAATATGGTGGGAGGGTCAATTAGGATAT--GTTTTTCGATGATTTCCT-CAAAAAAAGTTTTAGATTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339149 85 - 171630274 ------GAGAGTCCA-GGCTTTCCGTTTTAGCGAAAATGTGATGGGAGCGTCAATAAGAAAAT--GGTTTTTGATAATTTCCT-TTAAA--------AAATTA
i calJac3.chr4             I 7 C 0
s saiBol1.JH378348            144124 93 -    375362 ------GAGAGTCGA-GCTTTCTGCTTTTAGCCAAAATATGGTGGGAGGGTGAATTAGGATGT--GTTTTTCTATGGTTTCCT-CAAAAACGGTTCTAGATTC
i saiBol1.JH378348         I 7 C 0
s cebCap1.NW_016108108v1      146118 93 -    373274 ------GAGAGCCGA-GCTTTCTGTTTTTAGCCAAAATATGGTGGGAGGGTGAATTAGGATGT--GTTTTTCGATGGTTTCCT-CAAAAAAAGTTCTAGATTC
i cebCap1.NW_016108108v1   I 7 C 0
s otoGar3.GL873742           1485555 99 -   2232465 ATTGGAAAGAGTCAAGGTTTTCTGTTTTTAGTCAAAATTTGGTGCAAGG----CGTAGGCTGTAAGTTTTTGGATGATTTCCTCCAGGAAAATTTTTAGATTT
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      109416 170 -    285216 I

a score=1342285.000000
s hg38.chr6_GL000254v2_alt     30430 150 +   4827813 TCTTACAGACTTTTTTCTCC------CCTTGTAAGGTCTGAGCCTTCTCAGACAGGAAACAACATTCCTC-TACTCTAGTTTTATCCCC-GCCACGCGTCTC-TCCCCAGCTGAGTGCAGCCTCAGCCTATGGTGCAAAAATGTTTAAAGCTGAGCATA
s panTro5.chr6              29007422 150 + 175400573 TCTTACAGACTTTTTTCCCC------CCTTGTAAGTTCTGAGCCTTCTCACACAGGAAACAACATTCCTC-TACTCTAGGTTTATCCCC-GCCACGCGTCTC-TCCCCAGCTGAGCGCAGCCTCAGCCTATGGTGCAAAAACGTTTAAAGCTGAGCATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29251040 150 + 173848474 TCTTACAGACTTTTTTCCCC------CCTTGTAAGTTCTGAGCTTTCTCACACAGGAAACAACATTCCTC-TACTCTAGGTTTATCCCC-GCCACGCGTCTC-TCCCCAGCTGAGCGCAGCCTCAGCCTATGGTGCAAAAACGTTTAAAGCTGAGCATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5041906 150 +   6154872 TCTTACACACTTTTTTCTCC------CCTTGTAAGGTCTGAGCCTTCTCAGACAGGAAACAACATTCCTC-TACTCTAGGTTTATCCCC-GCCACGCGTCTC-TCCCCAGCTGAGCGCAGCCTCAGCCTATGGTGCAAAAATGTTTAAAGCTGAGCATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74044890 149 + 122973662 TCTTACAGACTTTTTTCTCC------CCTTGTAAGGTCTGAGCCTTCTCAGACAGGAAACAACATTCCTC-TACTCTAGGTTTATCCCT--CCACGCGTCTC-TCCCCAGCTGGGCGCAGCCTCAGCCTATGCGGCAAAAATATTTAAAGCTGAGCATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29189436 147 + 172585720 CCTTACATACTTTTTTCTTC------CCTTGTAAGGTCTGAGCCTTCTCAGACAGGA---AACATTCGTC-TACTCTAGCTTTATCCCG-GTCACGCGTCTC-TCCCCAGCTGGGCGCAGCCTCAGCCTATGCTGCAAAAATGTTTAAAGCTGAGCATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28877934 147 - 170955103 CCTTACAGACTTTTTTCTTC------CCTTGTAAGGTCTGAGCCTTCTCAGACAGGA---AACATTCCTC-TACTCTAGCTTTATCCCG-GTCACGCGTCTC-TCCCCAGCTGGGCGCAGCCTCAGCCTATGCTGCAAAAATGTTTAAAGCTGAGCATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1852168 147 -   2996164 CCTTACAGACTTTTTTCTTC------CCTTGTAAGGTCTGAGCCTTCTCAGACGGGA---AACATTCCTC-TACTCTAGCTTTATCCCG-GTCACGCGTCTC-TCCCCAGCTGGGCGCAGCCTCAGCCTATGCTGCAAAAATGTTTAAAGCTGAGCATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1743963 147 -   2157725 CCTTACAGACTTTTTTCTTC------CCTTGTAAGGTCTGAGCCTTCTCAGACAGGA---AACATTCCTC-TACTCTAGGTTTATCCCC-GTCACGCGTCTC-TCCCCAGCTGGGCGCAGCCTCAGCCTATGCTGCAAAAATGTTTAAAGCTGAGCATA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28197118 147 -  71996105 CCTTATAGACTTTTTTCTTC------CCTTGTAAGGTCTGAGCCTTCTCAGACAGGA---AACATTCCTC-TTCTCTAGGTTTATCCCC-GTCACGCGTCTC-TCCCCAGCTGGGCGCAGCCTCAGCCTATGCTGCAAAAATGTTTAAAGCTGAGCATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1853572 147 +   2316924 CCTTACAGACTTTTTTCTTC------CCTTGTAAGGTCTGAGCCTTCTCAGACAGGA---AACATTCCTC-TACTCTAGGTTTATCCCC-GTCACGCGTCTC-TTCCCAGCTGGGCGCAGCCTCAGCCTATGCTGCAAAAATGTTTAAAGCTGAGCATA
i manLeu1.NW_012104165v1   C 0 I 5448
s colAng1.NW_012115566v1     1727093 147 -   3067355 CCTTACAGACTTTTTTCTTC------CCTTGTAAGGTCTGAGCCTTCTCAGACAGGA---AACATTCGTC-TACTCTAGGTTTATCTCC-GTCACGCATCTC-TCGCCAGCTGGGCGCAGCCTCAGCCTATGCTGCAAAAATGTTTAAAGCTGAGCATA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339234 154 - 171630274 TCTCACAGACTTTTACTTTTTCTCCCCTTTGTACGGTCCGAGCCTTCCCAGACAGGAAACAGAA-TCCGC-TGCTCTAGGATGATCGC--GCCTCGCGTGTC-TCCCCCGCTGCGCGCAGCCTCAGCCTCAGCTGCAGAAAGGCTTGAAGCTGAGCTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            144217 147 -    375362 TCTTACAGACTTTTTCCTTT------CCTTGTACGGTCTGAGCCTTCCCAGACAGGAAGCAGCA-TCCTC-TACTCTGGGTTTATCCC--GCCGCACCTGTC--CCACCGCTGGGCGCATCCTCAGCCTCCGCTGCAGAAATGCTTAAAGCTGAGCCTA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      146211 147 -    373274 TCTTACAGAATTTTTCCTTT------CCTTGTACGGTCCGAGCCTTCCCAGACAGGAAGCAGCA-TCCTC-TACTCTAGGTTTATCCT--GCCGCGCGTGTC--CCCCAGCTGGGCGCAGCCTCAGCCTCTGCTGCAGAAATGCTTAAAGCTGAACCCA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      109586 150 -    285216 TCTTACAAACTTTTTTCTCC-----CCTTTGAACAGTCTGAGCCTTCCCAGACAGGAAACAGCA-TCCCTGTACTCTTAGTTTATCGC--GCCTCGCGCGTC-TCCCCAGCTGCGCGCAGCCTCAGCCTCTGCTGCAAAAAGGCATGAAGTTGAGCATA
i aotNan1.NW_018494050v1   I 170 C 0
s otoGar3.GL873742           1485654 143 -   2232465 TCTTACAA-------TCCCC------AGTTGCAATATCTGCACTTTCAGAGACAGGAAACAATAATCCTC-TATTCTAGGTTTTCCGCTAGCCGCGCATCTCTTCCTCAACTGGACCCAGCCTCAGCTTATGCTGCGACAATGCT--GAGTTGAGTACA
i otoGar3.GL873742         C 0 C 0

a score=32486.000000
s hg38.chr6_GL000254v2_alt     30580 16 +   4827813 CAGAGAAGG-AAAAGA-A
s panTro5.chr6              29007572 16 + 175400573 TAGAGAAGG-AAAATA-A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29251190 16 + 173848474 TAGAGAAGG-AAAATA-A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5042056 17 +   6154872 TAGAGAAGGAAAAAGA-A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74045039 16 + 122973662 TACAGAAGG-AAAAAA-A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29189583 16 + 172585720 TAGAGAAGG-AAAAAA-A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28878081 16 - 170955103 TAGAGAAGG-AAAAAA-A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1852315 16 -   2996164 TAGAGAAGG-AAAAAA-A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1744110  9 -   2157725 TAGAGAAGG---------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28197265  9 -  71996105 CAGAGAAGG---------
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1727240 16 -   3067355 TAGAGAAGG-AAAAAG-A
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339388 15 - 171630274 TAGAGAAAG-GAGAGA--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            144364 15 -    375362 CGGAGAGGA-GAGAGA--
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      146358 15 -    373274 CGGAGAACA-GAGAGA--
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      109736 16 -    285216 CAGAGAAGA-AAAAGAA-
i aotNan1.NW_018494050v1   C 0 I 487
s otoGar3.GL873742           1485797  8 -   2232465 CAGGAGAG----------
i otoGar3.GL873742         C 0 C 0
e manLeu1.NW_012104165v1     1853719 5448 +   2316924 I

a score=122481.000000
s hg38.chr6_GL000254v2_alt     30596 29 +   4827813 GA-AAAAAAAAATAGAAAGTGATGTGGA----AA
s panTro5.chr6              29007588 28 + 175400573 G--AAAAAAAAATAGAAAGTGGTGTGGA----AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29251206 28 + 173848474 G--AAAAAAAAATAGAAAGTGGTGTGGA----AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5042073 28 +   6154872 G--AAAAAAAAATAGAAAGTGATGTGGA----AA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74045055 28 + 122973662 G--AAAAAAAAAGAGAAAGTGATGTGGA----AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29189599 29 + 172585720 G--AAAAAAA---AGAAAGTGATGTGGAAATTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28878097 29 - 170955103 G--AAAAAAA---AGAAAGTGATGTGGAAATTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1852331 29 -   2996164 G--AAAAAAA---AGAAAGTGATGTGGAAATTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1744119 27 -   2157725 ----AAAAAA---AGAAAGTGATGTGGAAATTAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28197274 27 -  71996105 ----AAAAAA---AGAAAGTGATGTGGAAATTAA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1727256 29 -   3067355 G--AAAAAAA---ATAAAGTGATATGGAAATTAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339403 20 - 171630274 -------AAC---GGAAAGCGATGTGGG----GA
i calJac3.chr4             C 0 I 4
s saiBol1.JH378348            144379 25 -    375362 G--AGAGAAA---AGAAAGTGATGTGGA----AA
i saiBol1.JH378348         C 0 I 4
s cebCap1.NW_016108108v1      146373 23 -    373274 ----GAGAAA---AGAAAGTGATGTGGA----AA
i cebCap1.NW_016108108v1   C 0 I 28
s otoGar3.GL873742           1485805 29 -   2232465 -GGAAAAAAAATTAGAAACCGATGCGGA----AA
i otoGar3.GL873742         C 0 I 7
e aotNan1.NW_018494050v1      109752 487 -    285216 I
e manLeu1.NW_012104165v1     1853719 5448 +   2316924 I

a score=15192.000000
s hg38.chr6_GL000254v2_alt     30625 3 +   4827813 GAT
s panTro5.chr6              29007616 3 + 175400573 GAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29251234 3 + 173848474 GAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5042101 3 +   6154872 GAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74045083 3 + 122973662 GAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29189628 3 + 172585720 AAT
i rheMac8.chr4             C 0 I 5
s macFas5.chr4              28878126 3 - 170955103 AAT
i macFas5.chr4             C 0 I 5
s macNem1.NW_012011356v1     1852360 3 -   2996164 AAT
i macNem1.NW_012011356v1   C 0 I 5
s cerAty1.NW_012001495v1     1744146 3 -   2157725 AAT
i cerAty1.NW_012001495v1   C 0 I 5
s chlSab2.chr17             28197301 3 -  71996105 AAT
i chlSab2.chr17            C 0 I 5
s colAng1.NW_012115566v1     1727285 3 -   3067355 AAT
i colAng1.NW_012115566v1   C 0 I 5
s calJac3.chr4             171339427 3 - 171630274 AAG
i calJac3.chr4             I 4 I 5
s saiBol1.JH378348            144408 3 -    375362 AAT
i saiBol1.JH378348         I 4 I 5
s otoGar3.GL873742           1485841 3 -   2232465 AGT
i otoGar3.GL873742         I 7 C 0
e aotNan1.NW_018494050v1      109752 487 -    285216 I
e cebCap1.NW_016108108v1      146396 28 -    373274 I
e manLeu1.NW_012104165v1     1853719 5448 +   2316924 I

a score=115588.000000
s hg38.chr6_GL000254v2_alt     30628 18 +   4827813 --CTACATATGAATCACA-AC
s panTro5.chr6              29007619 18 + 175400573 --CTACATATGAATCACA-AC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29251237 18 + 173848474 --CTACATATGAATCACA-AC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5042104 18 +   6154872 --CTACATATGAATCACA-AC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74045086 18 + 122973662 --CTACATCTGAATCACA-AC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29189636 18 + 172585720 --CTACATATGAATCACA-AC
i rheMac8.chr4             I 5 C 0
s macFas5.chr4              28878134 18 - 170955103 --CTACATATGAATCACA-AC
i macFas5.chr4             I 5 C 0
s macNem1.NW_012011356v1     1852368 18 -   2996164 --CTACATATGAATCACA-AC
i macNem1.NW_012011356v1   I 5 C 0
s cerAty1.NW_012001495v1     1744154 18 -   2157725 --CTACATATGAATCACA-AC
i cerAty1.NW_012001495v1   I 5 C 0
s chlSab2.chr17             28197309 18 -  71996105 --CTACATATGAAACACA-AC
i chlSab2.chr17            I 5 C 0
s manLeu1.NW_012104165v1     1859167 18 +   2316924 --CTACATATGAATCACA-AC
i manLeu1.NW_012104165v1   I 5448 C 0
s colAng1.NW_012115566v1     1727293 17 -   3067355 --CTACATATGAATCACA-A-
i colAng1.NW_012115566v1   I 5 C 0
s calJac3.chr4             171339435 17 - 171630274 --CTGCATGTGAACCTCAC--
i calJac3.chr4             I 5 C 0
s saiBol1.JH378348            144416 16 -    375362 --CTGCATACAAATCTCA---
i saiBol1.JH378348         I 5 C 0
s otoGar3.GL873742           1485844 20 -   2232465 CAATACAAATGAATCTCA-AA
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      109752 487 -    285216 I
e cebCap1.NW_016108108v1      146396 28 -    373274 I

a score=576397.000000
s hg38.chr6_GL000254v2_alt     30646 62 +   4827813 ACAGTGTTTAAAATGTGCGTAAACGGGTCTAGGAGTGCGCTGCACTATTGTGAAAAGTTCAT
s panTro5.chr6              29007637 62 + 175400573 ACAGTGTTTAAAATGTGCGTAAACGGGTCTAGGAGTGCGCTGCGCTATTGTGAAAAGTTCGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29251255 62 + 173848474 ACAGTGTTTAAAATGTGCGTAAACGGGTCTAGGAGTGCGCTGCACTATTGTGAAAAGTTCGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5042122 62 +   6154872 ACAGTGTTTAAGATGTGCGTAAACGGGTCTAGGAGTGCGCTGCACTATTGTGAAAAGTTCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74045104 62 + 122973662 ACAGTGTTTAAAATGTGCGTAAACGAGTCTAGGAGTGCGCTGCACTATTGTGAAAAGTTCGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29189654 62 + 172585720 GCAGTGTTTAAAATGTGCGTAAACGGGTCTAGGAGTGCGCTGCACTATTGTGAAAAGTTCGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28878152 62 - 170955103 GCAGTGTTTAAAATGTGCGTAAACGGGTCTAGGAGTGCGCTGCACTATTGTGAAAAGTTCGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1852386 62 -   2996164 GCAGTGTTTAAAATGTGCGTAAACGGGTCTAGGAGTGCGCTGCACTATTGTGAAAAGTTCGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1744172 62 -   2157725 ACAGTGTTTAAAATGTGCGTAAACGGGTCTAGGAGTGCGCTGCACTATTGTGAAAAGTTCGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28197327 62 -  71996105 ACATAGTTTAAAATGTGCGTAAACGGGTCTAGGAGTGCGCTGCACTATTGTGAAAATTTCGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1859185 62 +   2316924 ACAGTGTTTAAAATGTGCGTAAACGGGTCTAGGAGTGCGCTGCACTATTGTGAAAAGTTCGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1727310 61 -   3067355 -CAGTGTTTAAAATGTGTGTAAACGGGTCTAGGAGTGCGCTGCACTATTGTGAAAAGTTCAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339452 59 - 171630274 ACGGTGCTTACAGTGCGTGCGAACGGCCCTGGGAG---GCTGCGCTCTAGTGAAAAGTTCAT
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            144432 62 -    375362 ACAGTGTTTAAAATGTGCGTAAATGGATCTAGGAGCGCGCTGCAATCCTGTGAAAAGTTCAT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      146424 62 -    373274 ACAGTGTTTAAAATGTGCGTAAATGGGTCTAGGAGCGCGCTGCAATCCTGTGAAAAGTTCAT
i cebCap1.NW_016108108v1   I 28 C 0
s otoGar3.GL873742           1485864 62 -   2232465 ATAGTGCTTAAAGTATGCGTAAACGGGACTAGTAGTGCGCGGAACTACCGCTGAAACTTCAT
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      109752 487 -    285216 I

a score=120601.000000
s hg38.chr6_GL000254v2_alt     30708 18 +   4827813 TCTGAA--------Agctgggcgcag
s panTro5.chr6              29007699 18 + 175400573 TCTGAA--------Agctgggcgcag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29251317 18 + 173848474 TCTGAA--------Agctgggcgcag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5042184 18 +   6154872 TCTGAA--------Agctgggcgcag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74045166 18 + 122973662 TCTGAA--------Agctgggcgcag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29189716 18 + 172585720 TCTGAA--------AActgggcgcag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28878214 18 - 170955103 TCTGAA--------AActgggcgcag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1852448 18 -   2996164 TCTGAA--------AActgggcgcag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1744234 18 -   2157725 TCTGAA--------AActgggcgcag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28197389 18 -  71996105 TCTGAA--------AActggacgcag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1859247 18 +   2316924 TCTGAA--------AActgggcgcag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1727371 18 -   3067355 TCTGAA--------AActgggcgaag
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            144494 26 -    375362 TCAGAAGACAGAGGggccgggcgcgg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      146486 26 -    373274 TCAGAAGTCAGTGGggccgggcgcgg
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1485926 17 -   2232465 TCAGGA---------GTAAGACGCAG
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      109752 487 -    285216 I
e calJac3.chr4             171339511  1 - 171630274 I

a score=680388.000000
s hg38.chr6_GL000254v2_alt     30726 108 +   4827813 tggctcatgcctataatctcagaacttcgggaggccgaggcggacggatcacttgagatcagaagttggagactatcctggtgaaaatggtgaaaccccgtccctact
s panTro5.chr6              29007717 108 + 175400573 cggctcacgcttataatctcagaacttcgggaggccgaggcggacggatcacttgagatcagaagttggagactatcctggtgaaaatggtgaaaccccgtccctact
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29251335 108 + 173848474 cggctcacgcttataatctcagaacttcgggaggccgaggcggacggatcacttgagatcagaagttggagactatcctggtgaaaatggtgaaaccccgtccctact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5042202 108 +   6154872 tggctcacgcctataatctcagaacttcgggaggctgaggcggacggatcacttgagatcagaagttggagactatcctggtgaaaatggtgaaaccccgtccctact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74045184 108 + 122973662 tggctcacgcctataatcccagcactttgggaggccgaggcggacggatcacttgagatcagaagttggagactatcctggtgaaaatggtgaaatcccgtccctact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29189734 108 + 172585720 tggctcacacctataatctcagcactttgggaggccgaggcggacgcatcacttgagatgaggagttggagactaacctggtgaaaatggtgaaacccagtccctact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28878232 108 - 170955103 tggctcacacctataatcccagcactttgggaggccgaggcggacgcatcacttgagatgaggagttggagactaacctggtgaaaatggtgaaacccagtccctact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1852466 108 -   2996164 tggctcacacctataatcccagcactttgggaggccgaggcggacgcatcacttgagatgaggagttggagactaacctggtgaaaatggtgaaacccagtccctact
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1744252 108 -   2157725 tggctcaggcctataatcccagcactttgggaggccgaggcggacgagtcacttgagatgaggagttggagactaacctagtgaaaatggtgaaacccagtccctact
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28197407 108 -  71996105 tggctcacgcctataatcccagcactttaggaggccgaggcggacgcatcacttaagatgaggagttggagactaacctactgaaaatggtgaaactcagtccctact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1859265 108 +   2316924 tggctcaggcctataatcccagcactttgggaggccgaggcggacgagtcacttgagatgaggagttggagactaacctagtgaaaatggtgaaacccagtccctact
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1727389 107 -   3067355 tggctcacacctataatcccaacactttgggaggccgaggcggacgcatcacttgagatgaggagttggagactaa-ctggtgaaaatggtgaaactcagtccctact
i colAng1.NW_012115566v1   C 0 I 166
s saiBol1.JH378348            144520  73 -    375362 cggctcacgcctgtaatcccagcactctgg-aggccgaagcagacggatcac----------------------------------gcggtgaaacacggtctctact
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      146512  74 -    373274 cggctcacacctgtaattccagcactctggtaggccaaggcagacggatcac----------------------------------gcggtgaaacccggcctctact
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1485943   0 -   2232465 C
e aotNan1.NW_018494050v1      109752 487 -    285216 I
e calJac3.chr4             171339511   1 - 171630274 I

a score=1139713.000000
s hg38.chr6_GL000254v2_alt     30834 182 +   4827813 aaaaatacaaaaattagccgggcgtggtggggggctcctgtaatctcagctaatcgggagactgaggcaggagaatcgcttgatcccaggaggtggaggttgcagtgaaccgagatcgcgccactgcactgcagcctgggcgacagagcgagactccgtctcaa-----aaaaacaa------aaacaaaaaa
s panTro5.chr6              29007825 182 + 175400573 aaaaatacaaaaattagccgggcgtggtggggggctcctgtaatctcagctaatcgggagactgaggcaggagaatcgcttgatcccaggaggtggagattgcagtgaaccgagatcgctccactgcactgcatcctgggcgacagagcgagactccgtctcaa-----aaaaacaa------aaacagaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29251443 171 + 173848474 aaaaatacaaaaattagccgggcgtggtggggggctcctgtaatctcagctaatcgggagactgaggcaggagaatcgcttgatcccaggaggtggagattgcagtgaaccgagatcgctccactgcactgcatcctgggcgacagagcgagactccgtctcaa-----aaaaaca-----------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5042310 176 +   6154872 aaaaatacaaaaattagccaggcgtggtggggggctcctgtaatctaagctaatcgggagactgaggcaggagaatcgcttgatcccaggaggtggaggttgcagtgaaccgagatcgcgccactgcactgcagcctgggcgacagagcgagactccgtctcaa-----aaaaaca------------aaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74045292 193 + 122973662 aaaaatacaaaaattagccgggtgtggtgcggggctcctgcaatctcagctaatcgggagactgaggtaggagaatcgcttgatcccaggaggtggaggttgcagtgaaccgagatcgcgccactgcactgcagcctgggcgacagagcgagactccgtctcaaacaacaaaaacaaacaagcaaacaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29189842 167 + 172585720 aaaaatacaaaaattagccgggcgtggtggcgggctcctgtaatctcagctaatcgggagactgaggcaggagaatctcttgatcccaggaggtagaggttgcagtgaaccgagatcgcgccactgcactccaacctgggcgacagagcgacactcagtctcaa-----aaa---------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28878340 167 - 170955103 aaaaatacaaaaattagccgggcgtggtggcgggctcctgtaatctcagctaatcgggagactgaggcaggagaatctcttgatcccaggaggtagaggttgcagtgaaccgagatcgcgccactgcactccaacctgggcgacagagagacactcagtctcaa-----aaa---------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1852574 160 -   2996164 aaaaatacaaaaattagcggggcgtggtggcgggctcctgtaatctcagctaatcgggagactgaggcaggagaatctcttgatcccaggaggtagaggttgcagtgaaccgagatcgcgccactgcactccaacctgggcgacagagcgacactcagtc---------------------------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1744360 164 -   2157725 aaaaatacaaaaattagccgggcgtggtggcgggctcctgtaatctcagctaatctggagactgaggcaggagaatctcttgatcccaggaggtagaggttgcagtgaaccgagatcgcgccactgcactccaacctgggcgacagagcgacactcagtctccc-----------------------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28197515 164 -  71996105 aaaaatacaaaaattagccgggcgtggtggcgagctcctgtaatctcagctaatccggagactgaggcaggagaatctcttgatcccgggaggtagaggttgcagtaaaccgagatcgcgccactgcactccaacctgggtgacagagcgacactcagtctcac-----------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1859373 164 +   2316924 aaaaatacaaaaattagccgggcgtggtggcgggctcctgtaatctcagctaatctggagactgaggcaggagaatctcttgatcccaggaggtagaggttgcagtgaaccgagatcgcgcctctgcactccaacctgggcgacagagcgacactcagtctccc-----------------------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1727662 164 -   3067355 aaaaatacaaaaattagccgggcgtggtggcgggctcctgtaatctcagctaatcgggagactgaggcaggagaatctcttgattccaggaagtagaggttgcagtgaaccgagatcgcgtcactgcactctaacctgggcgacagagcgacactcagtctcaa-----------------------------
i colAng1.NW_012115566v1   I 166 C 0
s saiBol1.JH378348            144593 182 -    375362 aaaaatacagacatcagccaggtgtggtggcgcgcacctgtaaccccagctactccagaagcggaagcaggaaaatcgcttgaacccgggaggcagaggttgccgtgaatcgagaccgcgccactgcactccagcctgggcgacagggcgagatgccgtttcca-----aaaagaaaaaagaaaaag------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      146586 182 -    373274 gaaaacacaaaaattagcccggtgtggtggcgcgcacctgtaatcccagctactcgggaggctgaagcaggagaatcgcttgaacccaggaggcggaggttgccgtgaatctagaccgcgccactgcactccagcttgggcggcagggctagacgccgtctcag-----gaaaaaaaaaaaaaaaaa------
i cebCap1.NW_016108108v1   C 0 I 17600
e otoGar3.GL873742           1485943   0 -   2232465 C
e aotNan1.NW_018494050v1      109752 487 -    285216 I
e calJac3.chr4             171339511   1 - 171630274 I

a score=18980.000000
s hg38.chr6_GL000254v2_alt     31016 39 +   4827813 caaaaacaa--aagcaaacaaaaaacaaaaacaaacaaaca
s panTro5.chr6              29008007 31 + 175400573 aaaaaacaa--aaacaaacaaaaaacaa--------aaacg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29251614 27 + 173848474 caaaaacag------aaacaaaaaaCAA--------AAACG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5042486 39 +   6154872 caaaaacaa--aaacaaacaaaaaacaaaaacaaaCAAACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74045485 41 + 122973662 caaaaacaaacaagcaaacaaaaaacaaaaacaaacaagca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29190009 26 + 172585720 -aaaaaaaa------aaaaaaaaaaaaa--------aaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28878507 26 - 170955103 -aaaaaaaa------aaaaaaaaaaaaa--------aaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1852734 20 -   2996164 -------aa------aaaaaaaaaaaaa--------aaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1744524 13 -   2157725 --------------------aaaaaaaa--------aaaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28197679 15 -  71996105 ------------------caaaaaaaaa--------aaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1859537 15 +   2316924 ------------------aaaaaaaaaa--------aaaaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1727826 19 -   3067355 --------a------aaaaaaaaaaaaa--------aaaaa
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            144775  7 -    375362 ---------------------aaaaaaa-------------
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1485943  0 -   2232465 C
e aotNan1.NW_018494050v1      109752 487 -    285216 I
e cebCap1.NW_016108108v1      146768 17600 -    373274 I
e calJac3.chr4             171339511  1 - 171630274 I

a score=48834.000000
s hg38.chr6_GL000254v2_alt     31055 8 +   4827813 aaaagtaa
s panTro5.chr6              29008038 8 + 175400573 aaaaGTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29251641 8 + 173848474 AAAAGTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5042525 8 +   6154872 AAAAGTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74045526 8 + 122973662 aaaagtaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29190035 8 + 172585720 aaaGGTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28878533 8 - 170955103 aaaGGTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1852754 8 -   2996164 aaaGGTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1744537 8 -   2157725 aaaGGTAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28197694 8 -  71996105 aaagtaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1859552 8 +   2316924 aaaGGTAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1727845 8 -   3067355 aaCAGTAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339512 8 - 171630274 AGGAGTAA
i calJac3.chr4             I 1 C 0
s saiBol1.JH378348            144782 8 -    375362 aaGAGTAA
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1485943 0 -   2232465 C
e aotNan1.NW_018494050v1      109752 487 -    285216 I
e cebCap1.NW_016108108v1      146768 17600 -    373274 I

a score=923099.000000
s hg38.chr6_GL000254v2_alt     31063 130 +   4827813 acGGGAGGAGCCG-------------AG-CGCCAGCTTGCGGGGAGACGGAAGAGGCGGGGTGCCGTGAAGTGGAGGAAGCAAAGGACAAAAGGGA--GAGAGGTAGAGGGCAAGGAAAAGCATCCTCAAGATTATTAGTACTTGG
s panTro5.chr6              29008046 130 + 175400573 ACGGGAGGATCCG-------------AG-CGCCAGCTTGCGGGGAGACGGAAGAGGCGGGGTGCCGTGAAGTGGAGGAAGCAAAGGACAAAAGGGA--GAGGGGTAGAGGGCAAGCAAAAGCATCCTCAAGATTATTAGTACTTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29251649 130 + 173848474 ACGGGAGGATCCG-------------AG-CGCCAGCTTGCGGGGAGACGGAAGAGGCGGGGTGCCGTGAAGTGGAGGAAGCAAAGGACAAAAGGGA--GAGGGGTAGAGGGCAAGCAAAAGCATCCTCAAGATTATTAGTACTTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5042533 130 +   6154872 ACGGGAGGAGCCG-------------AG-CGCCAGCTTGCGGGGAGACGGAAGAGGCGGGGTGCCGTGAAGTGGAGGAAGCAAAGGTCAAAAGGGA--GAGAGGTAGAGGGCAGGGAAAAGCATCCTCAAGATTATTAGTACTTGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74045534 130 + 122973662 acGGGAGGAGCCG-------------AG-CGTCAGCTTGCGGGGAGAGGGAAGAGGCGGGGTGCCGTGAAGTGGAGGAAAAAAAGGACAAAAGGGA--GAGGGGTAGAGGGCAAGGAAAAGCATCCTCAAGATTATTAGTACTTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29190043 127 + 172585720 ACGGGAGGAGCCG-------------AG----CAGCTTGCGGGGAGAGAGAAGAGGCGGGGTGCCGTGAAGTGGAAGAAGAAAAGGACAAAAGGGA--GAGGGATAGAGGGCAAGGAAAAGCATCCTCAAGATTATTAGGACTTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28878541 127 - 170955103 ACGGGAGGAGCCG-------------AG----CAGCTTGCGGGGAGAGAGAAGAGGCGGGGTGCCGTGAAGTGGAAGAAGAAAAGGACAAAAGGGA--GAGGGATAGAGGGCAAGGAAAAGCATCCTCAAGATTATTAGGACTTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1852762 127 -   2996164 ACGGGAGGAGCCG-------------AG----CAGCTTGCGGGGAGAGAGAAGAGGCGGGGTGCCGTGAAGTGGAAGAAGAAAAGGACAAAAGGGA--GAGGGATAGAGGGCAAGGAAAAGCATCCTCAAGATTATTAGGACTTGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1744545 127 -   2157725 ACGGGAGGAGCCG-------------AG----CAGCTTGCGGGGAGAGGGAAGAGGCGGGGTGCCGTGAAGTGGAGGAAGAAAAGGACAAAAGGGA--GAGGGATAGAGGGCAAGGAAAAGCATCCTCAAGATTATTAGGACTTGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28197702 127 -  71996105 aCGGGAGGAGCCG-------------AG----CAGCTTGCGGGGAGAGGGAAGTGGCGGGGTGCCGTGAAGTGGAGGAAGAAAAGGACAAAAGGGA--GAGGGATAGAGGGCCAGGAAAAGCATCCTCAAGATTATTAGGACTTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1859560 127 +   2316924 ACGGGAGGAGCCG-------------AG----CAGCTTGCGGGGAGAGGGAAGAGGCGGGGTGCCGTGAAGTGGAGGAAGAAAAGGACAAAAGGGA--GAGGGATAGAGGGCAAGGAAAAGCATCCTCAAGATTATTAGGACTTGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1727853 127 -   3067355 ACGGGAGATGCCA-------------GG----CAGCTTGTGGGAAGAGGGAAGAGGCGGGGTGCCGTGAAGTGGAGGAAGAAAAGGACAAAAGGGA--GAGGGATAGAGGGCAAGGAAAAGCATCCTCAAGATTATTAGGACTTGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339520 134 - 171630274 ACGGGGCGGACGGTGGAGACCAGCCCGG-AGCCCGC-TGCGGGGAGA--GAAGGGGC-GGGTGCGGGGAAGTGGAGGAAGAAAAAC----AAAAGG--GAGGGGTGGAGGGC-AGGAAAAGCGTCCTCAAGGTGGTTCGGACTCGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            144790 126 -    375362 ATGGGAGGAGCGG-------------AG-CGCCAGC-TGCGGGGAGAGGGGAGAGGC-GGGTGCGGGGAAGTGGAGGAAGAAAAACAC-AAAAGGA--GACGGGTCGAGTGC-AGGAAAAGCCTCCTCAAGGTGATTGGGACTTGG
i saiBol1.JH378348         C 0 I 27770
s otoGar3.GL873742           1485943 129 -   2232465 ---AGAAGAGGAG-------------GGTCACCAGCTGGTGAGGAGAGACAAAAGGCGGCATGGGGTGAAGAAGAAAAAGAAGAGGAGAAAAGGAAGTGAGGAGAAGGCGGCAAGG-GAAGCATCCTCATAATCATTAGGATTTGG
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      109752 487 -    285216 I
e cebCap1.NW_016108108v1      146768 17600 -    373274 I

a score=374704.000000
s hg38.chr6_GL000254v2_alt     31193 50 +   4827813 ATAGACTGGATGGTAGAGTGAGTCTGATCGCCACATCTCTCCGTCCCTTC
s panTro5.chr6              29008176 50 + 175400573 ATGGACTGGATGGTAGAGTGAGTCTAATCGCCACATCTCTCCGTCGCTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29251779 50 + 173848474 ATGGACTGGATGGTAGAGTGAGTCTAATCGCCACATCTCTCCGTCGCTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5042663 50 +   6154872 ATGGACTGGATGGTAGAGTGAGTCTAATCGCCACATCTCTCCGTCGCTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74045664 50 + 122973662 ATGGACTGGATGGTAGAGTGAGTCTAATCGCCACATCTCTCCGTCGCTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29190170 50 + 172585720 ATGAACTGGATGGTAGAGTGAGTCTAAGCGCCACATCTCTCCGTCGCTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28878668 50 - 170955103 ATGAACTGGATGGTAGAGTGAGTCTAAGCGCCACATCTCTCCGTCGCTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1852889 50 -   2996164 ATGAACTGGATGGTAGAGTGAGTCTAAGCGCCACATCTCTCCGTCGCTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1744672 50 -   2157725 ATGAACTGGATGGTAGAGAGAGTCTAAGTGCCACATCTCTCCGTCTCTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28197829 50 -  71996105 ATGAACTGGATGGTAGAGTGAGTCTAAGCACCACATCTCTCCGTCCCTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1859687 50 +   2316924 ATGAACTGGATGGTAGAGAGAATCTAAGTGCCACATCTCTCCGTCCCTTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1727980 50 -   3067355 ACGAACTGGATGGTAGAGTGAGTCTAAACGCCACATCTCTCCGTCGCTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339654 50 - 171630274 CCGGACGGGATGGCAGCGCGAGTGTGAGCGCCGCGTGTCGCCGTCGCTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            172686 48 -    375362 CTGCACCGGACCGCGGAGCGAGTCTAAGCGC--CCTGTTTCCGCCGCTTC
i saiBol1.JH378348         I 27770 C 0
s otoGar3.GL873742           1486072 50 -   2232465 ATGGATCAGGGAGTGGAGTGAGTCTAAGTGCCACGTCTCTCCGTGGTTTC
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      109752 487 -    285216 I
e cebCap1.NW_016108108v1      146768 17600 -    373274 I

a score=19180.000000
s hg38.chr6_GL000254v2_alt     31243 2 +   4827813 CT
s panTro5.chr6              29008226 2 + 175400573 CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29251829 2 + 173848474 CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5042713 2 +   6154872 CT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74045714 2 + 122973662 CT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29190220 2 + 172585720 CT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28878718 2 - 170955103 CT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1852939 2 -   2996164 CT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1744722 2 -   2157725 CT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28197879 2 -  71996105 CT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1859737 2 +   2316924 CT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1728030 2 -   3067355 CT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339704 1 - 171630274 -T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            172734 1 -    375362 -T
i saiBol1.JH378348         C 0 T 27819
s cebCap1.NW_016108108v1      164368 2 -    373274 CT
i cebCap1.NW_016108108v1   I 17600 C 0
s otoGar3.GL873742           1486122 2 -   2232465 CT
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      109752 487 -    285216 I

a score=770087.000000
s hg38.chr6_GL000254v2_alt     31245 96 +   4827813 CTGGATAGGAGGGAAGAGAGGTTCCTTTTTGTCCCTAGGGGGGTAGGCTCGACCAGGAAGGGGACCTGGTTCGTTTCGCCCA-GGCTGGCACGGCTT
s panTro5.chr6              29008228 95 + 175400573 CTGGATATGAGGGAAGAGAGGTTCCTTTTTGTCCCTA-GAGGGTAGGCTCGACCAAGAAGGGGACCTGGTTCGTTTCGCCCA-GGCTGGCACGGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29251831 95 + 173848474 CTGGATATGAGGGAAGAGAGGTTCCTTTTTGTCCCTA-GGGGGTAGGCTCGACCAAGAAGGGGACCTGGTTCGTTTCGCCCA-GGCTGGCACGGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5042715 96 +   6154872 CTGGATATGAGGGAAGAGAGGTTCCTTTTTGTCCCTAGGGGGGTAGGCTCGACCAGGAAGGGGACCTGGTTCGTTTCGCCCA-GGCTGGCACGGCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74045716 96 + 122973662 CTGGATATGAGAGAAGAGAGGTTCCTTTTTGTCCCTAGGGGGATAGGCTCGACCAGGAAGGGGACCTGGTTCGTTTCGCCCA-GGCTGTCACGGCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29190222 96 + 172585720 CTGGATATAAGGGAAGAGAGGTTCCTTTTTGTCTGTAGGGAGGGAGGCTCGACCAGGAAAGGGACCTGGTTCGTTTTGCCCA-GGCTGTCACGGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28878720 96 - 170955103 CTGGATATAAGGGAAGAGAGGTTCCTTTTTGTCTGTAGGGAGGGAGGCTCGACCAGGAAAGGGACCTGGTTCGTTTTGCCCA-GGCTGTCACGGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1852941 96 -   2996164 CTGGATATAAGGGAAGAGAGGTTCCTTTTTGTCTGTAGGGAGGGAGGCTCGACCAGGAAAGGGACCTGGTTCGTTTTGCCCA-GGCTGTCACGGCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1744724 96 -   2157725 CTGGATATGAGGGAAGAGAGGTTCCTTTTTGTCTGTAGGGAGGGAGGCTCGACCAGGAAAGGGACCTGGTTGGTTTCGCCCA-GGCTGTCATGGCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28197881 96 -  71996105 CTGGATAAGAGGGAAGAGAGGTTCCTTTTTGTCTGTAGCGGGGGAGGCTCGACCAGGAAAGGGACCTGGTTCGTTTCGCCCA-GGCTGTCACAGCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1859739 96 +   2316924 CCGGATATGAGGGAAGAGAGGTTCCTTTTTGTCTGTAGGGAGGGAGGCTCCACCAGGAAAGGGACCTGGTTCGTTTCGCCCA-GGCTGTCATGGCTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1728032 96 -   3067355 CTGGATATGAGGGAAGAGAGGTTCCTTTTTGTCTGTAGGGAGGGAGGCTCGACCGGGAAAGGGACTTGGTTCGTTTCGCCCA-GGCTGTCACTGCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339705 94 - 171630274 CTGGACGGGAGGGAAGAGACGCTCCTTTCTGTCCCTAGGGAGGCG-GCTCGGCCCGGAAGGGG-CCTGGTTCGCTTGGCGCC-GGCTGTCAGGGCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            144916 85 -    375362 CTGGACGGGAGGGAAGAGAGGCCCCTTTTTGTCCCTGGGGAGGTA-GCTCGGCCGGGAAGGGG-CCTGGTTCGTTTGGCGCA-GGCTG---------
i saiBol1.JH378348         T 27819 C 0
s cebCap1.NW_016108108v1      164370 92 -    373274 CTGGACAGGAGGGAAGAG--GCTCCTTTTTGTCCCTAGGGAGGTA-GCTCGCCAGGGAAGGGG-CCTGGTTCGTTTCGCGCA-GGCTGTCACGGCTT
i cebCap1.NW_016108108v1   C 0 I 25
s otoGar3.GL873742           1486124 97 -   2232465 CCGGATAGATGGGAGGAGATAATTCTTTTTGCCCCTGGCGAGGTGAGATTGACCAGGAAAAGGGTCGGATTACTTTCTCCCCTGGCTGTAGCAGATT
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      109752 487 -    285216 I

a score=789613.000000
s hg38.chr6_GL000254v2_alt     31341 116 +   4827813 CAAGAGCGCCTCACCTCTCTTTACGTTGCTGGA-CAGACCAGTTGAGCTCTTTGGGTATGCACGTAATGTCGCATTTTTATTTTCAGTTCAGGAAATGCTGATATTGG-AGCTTCTGA
s panTro5.chr6              29008323 116 + 175400573 CAAGAGCGCCTCACCGCTCTTTACGTTGCTGGA-CAGACCAGTTGAGCTTTTTGGGTATGCACGTAAGGTCGCATTTTTATTTTCAGTTCAGGAAATGCTGATACTGG-AGCTTCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29251926 116 + 173848474 CAAGAGCGCCTCACCGCTCTTTACGTTGCTGGA-CAGACCAGTTGAGCTTTTTGGGTATGCACGTAAGGTCGCATTTTTATTTTCAGTTCAGGAAATGCTGATACTGG-AGCTTCTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5042811 116 +   6154872 CAAGAGCGCCTCACCGCTCTTTACGTTGCTGGA-CAGACCAGTTGAGCTCTTTGGGTATGCACGTCAGGTCGCATTTTTATTTTCAGTTCAGGAAATGCTGATACTGG-AGCTTCTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74045812 116 + 122973662 CAAGAGCGCCTCACCGCTCTTTACGTTGCTGGA-CAGACCAGTTGAGCTCTTTGGGTATGCACGTAAGGTCGCATTTTTATTTGCGGTTCAGGAAATGCTGATACTGG-AGCTTCTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29190318 116 + 172585720 CAAGAGCGCCTCACCGCTCTTTCCGTTGCTGGA-CAGACCAGCTGAGCTCTTTGGGTACGCACGTAAGGTCGCATTTTGATTTTTGGTTCAGGAAGTGCTGATACTGG-AGCTTCTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28878816 116 - 170955103 CAAGAGCGCCTCACCGCTCTTTCCGTTGCTGGA-CAGACCAGCTGAGCTCTTTGGGTACGCACATAAGGTCGCATTTTGATTTTTGGTTCAGGAAGTGCTGATACTGG-AGCTTCTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1853037 116 -   2996164 CAAGAGCGCCTCACCGCTCTTTCCGTTGCTGGA-CAGACCAGCTGAGCTCTTTGGGTACGCACGTAAGGTCGCATTTTGATTTTTGGTTCAGGAAATGCTGATACTGG-AGCTTCTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1744820 116 -   2157725 CAAGAGCTCCTCACTGCTCTTTCCGTTGCTGGA-CAGACCAGCTGAACTCTTTGGGTTCGCACGTAAGGTCGCATTTTGATTTTTGGTTCAGGAAATGCTGACACTGG-AGCTTCTGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28197977 116 -  71996105 CAAGAGCGCCTCACCGCTCTTTCCGTTGCTGGA-CAGACCAGCTGAGCTCTTTGGGTACGCACGTAAGGTCGCATTTTGATTTTTGTTTCAGGAAATGCTGATACTGG-AGCTTCTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1859835 116 +   2316924 CAAGAGCGCCTCACTGCTCTTTCCGTTGCTGGA-CAGACCAGCTGAACTCTTTGGGTTCGCACGTAAGGTCGCATTTTGATTTTTGGTTCAGGAAATGCTGACACTGG-AGCTTCTGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1728128 116 -   3067355 CAAGAGCGCCTCACCGCTCTTTCCGTTGCTGGA-CAGACCAGCTGAGCTCATTGGGTACGCACGTAAGGTCGCATTTTGATTTTTGGTTCAGGAAATGCTGATACTGG-AGCTTCTGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339799  98 - 171630274 CGGGACCGCCTCG---CGCTTTCCG--------------CGGCT--GCACTTTGGGGACGCCCGTGATGTGGGGTTTTTATTTTCGGTCCGGGAACCGGCGATCCTGG-AGCTTCTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            145001  89 -    375362 -------GCTCCA---CACAC------------------CGGCTGGGCTCTTTGGGGATGCACGTGATGTTGCGTTTTTGTTTGCGGCTCAGGAACCGCTGATATTGG-AGCTTCTGA
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1486221 101 -   2232465 CAAGAGCTCCTCGCCGCTCTTTCTGTCTCTGGATTAGACAGGCTGAGTACGTTG-----------------ATGTTTTTGTTTGTGGTTCAGGAAGCGCTGGTATTGGTAGCTCCGGA
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      109752 487 -    285216 I
e cebCap1.NW_016108108v1      164462  25 -    373274 I

a score=102504.000000
s hg38.chr6_GL000254v2_alt     31457 12 +   4827813 GGGAGCTGCAGT
s panTro5.chr6              29008439 12 + 175400573 GGGAGCTGCAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29252042 12 + 173848474 GGGAGCTGCAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5042927 12 +   6154872 GGGAGCTGCAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74045928 12 + 122973662 GGGAGCTGCAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29190434 12 + 172585720 GGGAGTTGCAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28878932 12 - 170955103 GGGAGTTGCAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1853153 12 -   2996164 GGGAGTTGCAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1744936 12 -   2157725 GGGAGTTGCAGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28198093 12 -  71996105 GGGAGTTGCAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1859951 12 +   2316924 GGGAGTTGCAGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1728244 12 -   3067355 GGGAGTTGCAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339897 12 - 171630274 GGGAGCCGCTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            145090 12 -    375362 GGGAGCCGCAGG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      110239 12 -    285216 GGGAGCCGCAGG
i aotNan1.NW_018494050v1   I 487 C 0
s otoGar3.GL873742           1486322 12 -   2232465 GCTAGCCACAGC
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      164462 25 -    373274 I

a score=1430837.000000
s hg38.chr6_GL000254v2_alt     31469 145 +   4827813 GATTTCCCGATTTCCTGCGCGC-------CTGTGTGGAAAGTTAGAAGCGGAATCTACCGGCAGCTTTGAGACTAAGCATGACGGTGGAAACAGCTAATTT---TATTAGCTTTTGTCTGAAATGCA----AAAGATGAGAAAGAAAATTCCCGTTTGT
s panTro5.chr6              29008451 145 + 175400573 GATTTCCCGATTTCCTGCGCGC-------CTGTGTGGAAAGTTAGAAGCGGAATCTACCGGCAGCTTTGAGACTAAGCATGACGGTGGAAACATCTGATTT---TATTAGCTTTTGTCTGAAATACA----AAAGATGAGAAAGAAAGTTCCCGTTTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29252054 145 + 173848474 GATTTCCCGATTTCCTGCGCGC-------CTGTGTGGAAAGTTAGAAGCGGAATCTACCGGCAGCTTTGAGACTAAGCATGACGGTGGAAACATCTGATTT---TATTAGCTTTTGTCTGAAATACA----AAAGATGAGAAAGAAAGTTCCCGTTTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5042939 145 +   6154872 GATTTCCCGATTTCCTGCGCGC-------CTGTGTGGAAAGTTAGAAGCGGAATCTACTGGCAGCTTTGAGACTAAGCATGACGGTGGAAACATCTAATTT---TATTAGCTTTTGTCTGAAATGCA----AAAGATGAGAAAGAAAGTTCCCGTTTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74045940 145 + 122973662 GATTTCCCGATTTCCTGCATGC-------CACTGTGGAAAGTTAGAAGCGGAATCTACTGGCAGCTTTGAGACTAAGCATGATGGAGGAAACATCTAATTT---TATTAGCTTTTGTCTGAAATGCA----AAAGATGAGAAAGAAAGTTCCCGTTTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29190446 145 + 172585720 GATTTCCAGATTTCCTGCGTGC-------CTGTGTGGAAAGTTAGAAGCGGAATCTACCGGCAGCTTTGAGACTAAGCATGACGGTGGAAACATCTAATTT---TATTAGCTTTTGCCTGAAATGCA----AAAGATGAGAAAGAAAGTTCCCGTTTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28878944 145 - 170955103 GATTTCCAGATTTCCTGCGTGC-------CTGTGTGGAAAGTTAGAAGCGGAATCTACCGGCAGCTTTGAGACTAAGCATGACGGTGGAAACATCTAATTT---TATTAGCTTTTGCCTGAAATGCA----AAAGATGAGAAAGAAAGTTCCCGTTTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1853165 145 -   2996164 GATTTCCAGATTTCCTGCGTGC-------CTGTGTGGAAAGTTAGAAGCGGAATCTACCGGCAGCTTTGAGACTAAGCATGACGGTGGAAACATCTAATTT---TATTAGCTTTTGTCTGAAATGCA----AAAGATGAGAAAGAAAGTTCCCGTTTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1744948 145 -   2157725 GATTTCCAGATTTCCTGCGTGC-------CTGTGTGGAAAGTTAGAAGCGGAATCTACCGGCAGCTTTGAGACTAAGCATGACGGTGGAAACATCTAATTT---TATTAGCTTTTGCCTGAAATGCA----AACGATGAGAAAGAAAGTTCCCGTTTGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28198105 145 -  71996105 GATTTCCAGATTTCCTGTGTGC-------CTGTGTGGAAAGTTAGAAGCGGAATCTACCGGCAGCTTTGAGACTAAGCACGACGGTGGAAACATCTAATTT---TATTAGCTTTTGCCTGAAATGCA----AAAGATGAGAAAGAAAGTGCCCATTTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1859963 145 +   2316924 GATTTCCAGATTTCCTGCGTGC-------CTGTGTGGAAAGTTAGAAGCGGAATCTACCGGCAGCTTTGAGACTAAGCATGACGGTGGAAACATCTAATTT---TATTAGCTTTTGCCTGAAATGCA----AAAGATGAGAAAGAAAGTTCCCGTTTGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1728256 145 -   3067355 GATTTCCAGATTTCCTGCGTGC-------CTGTGTGGAAAGTTGGAAGCTGAATCTACCGGCAGCTTTGAGACTAAGCATGACGGTGGAAACATCTAATTT---TATTAGCTTTTGCCTGAAATGCA----AAAGATAAGAAAGAAAGTTCCCGTTTGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339909 151 - 171630274 gatttcccgatttcccgatttcccgCGTGCCGCGTGGAGCGTTAGCCGCGG-ATCTGCCCGCAGCTTCGAGACTGAGCGTGGCCGTGGAAACGCTTCATTG---TATTAGCTTTAGCTCCAAATGCA----AACGGTGGGAATGAAAGTTCCCGTTTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            145102 144 -    375362 GATTTCCCGATTTCCCGGGTGC-------CCGCGTGGAGAGTTAGCCGCGA-ATCTGCCGGCAGCTTCGAGACTGAGCGCGACCGTGGAAACGTCTAACTG---TATTAGCTTTTGCTTGAAATGCA----AACGATGAGATTGAAAGTTCCCGTTTGT
i saiBol1.JH378348         C 0 I 1296
s cebCap1.NW_016108108v1      164487 147 -    373274 GATTTCCCGATTTCCCGCGTGC-------CCGTGTGGAGAGTTAGCAGCGG-ATCTGCCTGCAGCTTCGAGACTGAGCGTGACCGTGGAAACGTCTATTTGTAATATTAGCTTTTGCTTGAGATGCA----AACGATGAGAATGAACCTTCCCGTTTGT
i cebCap1.NW_016108108v1   I 25 C 0
s aotNan1.NW_018494050v1      110251 144 -    285216 GATTTCCCGATTTCCCGCGTGC-------CCGTGTGGAGACTCAGCCGCGG-ATCTGCCGGCGGCTTCGAGACTGAGCGTGACCGTGGAAACGTCTAATCG---TATTAGCTTTTGCTCGAGATGCA----CACGATGAGAATGAAAGTTCCCGTTTGT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486334 144 -   2232465 CCGTTCCGGGT---CCGCGTGC-------GGGTGATGAAAGT-GGAAGCCGGATCTACCCGCAGCTTTAAGGTTGAGAACTACGATGGAAA-ATCTAATTT---TACCAGGTTTTGCTTGAAATACAAAACAAAAATGAGAAAGAAAGTTTCTGTTTGT
i otoGar3.GL873742         C 0 C 0

a score=100406.000000
s hg38.chr6_GL000254v2_alt     31614 9 +   4827813 TTGCTCCAC
s panTro5.chr6              29008596 9 + 175400573 TTGCTCCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29252199 9 + 173848474 TTGCTCCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5043084 9 +   6154872 TTGCTCCAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74046085 9 + 122973662 TTGCTCCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29190591 9 + 172585720 TTGCTCGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28879089 9 - 170955103 TTGCTCGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1853310 9 -   2996164 TTGCTCGAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1745093 9 -   2157725 TTGCTCCAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28198250 9 -  71996105 TTGCTCCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1860108 9 +   2316924 TTGCTCCAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1728401 9 -   3067355 TTGTTGCAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340060 9 - 171630274 TTGCTCCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            146542 9 -    375362 TTGCTCCGC
i saiBol1.JH378348         I 1296 C 0
s cebCap1.NW_016108108v1      164634 9 -    373274 TTGCTCCAC
i cebCap1.NW_016108108v1   C 0 T 15067
s aotNan1.NW_018494050v1      110395 9 -    285216 TTGCTCCAC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486478 9 -   2232465 TTGCTCCAC
i otoGar3.GL873742         C 0 C 0

a score=20010.000000
s hg38.chr6_GL000254v2_alt     31623 2 +   4827813 AT
s panTro5.chr6              29008605 2 + 175400573 AT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29252208 2 + 173848474 AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5043093 2 +   6154872 AT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74046094 2 + 122973662 AT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29190600 2 + 172585720 AT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28879098 2 - 170955103 AT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1853319 2 -   2996164 AT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1745102 2 -   2157725 AT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28198259 2 -  71996105 AT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1860117 2 +   2316924 AT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1728410 2 -   3067355 AT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340069 2 - 171630274 GT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            146551 2 -    375362 AT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      110404 2 -    285216 AT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486487 2 -   2232465 AT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      164643 15067 -    373274 T

a score=47319.000000
s hg38.chr6_GL000254v2_alt     31625  7 +   4827813 ACTTCTC----
s panTro5.chr6              29008607  7 + 175400573 ACTTCTC----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29252210  7 + 173848474 ACTTCTC----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5043095  7 +   6154872 ACTTCTC----
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29190602  7 + 172585720 ATTTCTC----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28879100  7 - 170955103 ATTTCTC----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1853321  7 -   2996164 ATTTCTC----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1745104  7 -   2157725 ATTTCTC----
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28198261  7 -  71996105 ATTTCTC----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1860119  7 +   2316924 ATTTCTC----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1728412  7 -   3067355 ATTTCTC----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340071  7 - 171630274 ATTTCTC----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            146553  7 -    375362 ATTTCAC----
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      110406  7 -    285216 ATTTCTC----
i aotNan1.NW_018494050v1   C 0 I 33
s otoGar3.GL873742           1486489 11 -   2232465 ATGTCTAATTC
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e nomLeu3.chr1a             74046096  0 + 122973662 C

a score=144706.000000
s hg38.chr6_GL000254v2_alt     31632 28 +   4827813 TTAG-------AAGCCTATGGAAAGCCAACTTTCC
s panTro5.chr6              29008614 28 + 175400573 TTAG-------AAGCCTATGGAAAGCCAACTTTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29252217 28 + 173848474 TTAG-------AAGCCTATGGAAAGCCAACTTTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5043102 28 +   6154872 TTAG-------AAGCCTATGGAAAGCCAACTTTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29190609 28 + 172585720 TTAG-------AAGCCTATGGAAAGCCAACTTTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28879107 28 - 170955103 TTAG-------AAGCCTATGGAAAGCCAACTTTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1853328 28 -   2996164 TTAG-------AAGCCTATGGAAAGCCAACTTTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1745111 28 -   2157725 TTAG-------AAGCCTATGGAAAGCCAACTTTCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28198268 28 -  71996105 TTAG-------AAGCCTATGGAAAGCCAACTTTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1860126 28 +   2316924 TTAG-------AAGCCTATGGAAAGCCAACTTTCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1728419 28 -   3067355 TAAA-------AAGCCTATGGAAAGCCAACTTTCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340078 33 - 171630274 CCAGAATGTGTGAG-AGATTAAAAGCCGGCGCCG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            146560 31 -    375362 CTAGAATG---AAGCCGACTGAAAGCCAGCGTCA-
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1486500 27 -   2232465 TTAG-------AAGCTTACTGGAACCCAACTTTT-
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      110413 33 -    285216 I
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e nomLeu3.chr1a             74046096  0 + 122973662 C

a score=361055.000000
s hg38.chr6_GL000254v2_alt     31660 44 +   4827813 CCCTGAAGAAACTCCTCCTGGCATTTGCAAAGAGCTCCTTTACT
s panTro5.chr6              29008642 44 + 175400573 CCCTGAAGAAACTCCTCCTGGCATTTGCAAAGAGCTCCTTTACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29252245 44 + 173848474 CCCTGAAGAAACTCCTCCTGGCATTTGCAAAGAGCTCCTTTACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5043130 44 +   6154872 CCCTGAAGAAACTCCTCCTGGCATTTGCAAAGAGCTCCTTTACT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29190637 44 + 172585720 CCCTGAAGAAACTCCTCCTGGCATTTGCAAGGAGCTCCTTTACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28879135 44 - 170955103 CCCTGAAGAAACTCCTCCTGGCATTTGCAAGGAGCTCCTTTACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1853356 44 -   2996164 CCCTGAAGAAACTCCTCCTGGCATTTGCAAGGAGCTCCTTTACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1745139 44 -   2157725 GCCTGAAGAAACTCCTCCTGGCATTTGCAAGAAGCTCCTTTACT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28198296 44 -  71996105 TCCTGAAGAAACTCCTCCTGGCATTTGCAAGGAGCTCCTTTACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1860154 44 +   2316924 GCCTGAAGAAACTCCTCCTGGCATTTGCAAGAAGCTCCTTTACT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1728447 44 -   3067355 CCCTGAAGAAACTCCTCCTGGCATTTGCAAGGAGCTCCTTTACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340111 40 - 171630274 -CGCGAAGAAA---CTCCTGCCGTTTGCAACGAGCTCCTTTGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            146591 41 -    375362 CCTTGAAGAAACTCCTCCTGGCGTTTGCCACGAGCTCTTT---T
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      110446 44 -    285216 CCCTGAAGAAACTCCTCCTGGCGTTTGCAACGAGCCCCTTTACT
i aotNan1.NW_018494050v1   I 33 I 17
s otoGar3.GL873742           1486527 44 -   2232465 TCCTGAAGAAACTCTTCCTGGCATTTGCAACCACCTTCTTTACT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e nomLeu3.chr1a             74046096  0 + 122973662 C

a score=164113.000000
s hg38.chr6_GL000254v2_alt     31704 27 +   4827813 CCTCTTGTCCAGCTCTTCTCTCAAAAG
s panTro5.chr6              29008686 27 + 175400573 CTTCTTGTCCAGCTCTTCTCTCAAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29252289 27 + 173848474 CTTCTTGTCCAGCTCTTCTCTCAAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5043174 27 +   6154872 CCTCTTGTCCAGCTCTTCTCTCAAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29190681 27 + 172585720 CCTCTTGTCCAGCTGTTTTCTCAAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28879179 27 - 170955103 CCTCTTGTCCAGCTGTTTTCTCAAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1853400 27 -   2996164 CCTCTTGTCCAGCTGTTTTCTCAAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1745183 27 -   2157725 CCTCTTGTCAAGCTCTTTTCTCAAAGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28198340 27 -  71996105 CCTCTTGTCCAGCTCTTTTCTCAAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1860198 27 +   2316924 CCTCTTGTCCAGCTCTTTTCTCAAAGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1728491 27 -   3067355 CCTCTTGTCCAACTCTTTTCTCAAAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340151 27 - 171630274 GCTCGCGTCCAGCGCTCGGCTCCAGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            146632 27 -    375362 ACTCCCGTCCAGCCCTTGGCTCAAAAG
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1486571 27 -   2232465 CCTCCCATCCTGTTCTTAACTCAAAAA
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      110490 17 -    285216 I
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e nomLeu3.chr1a             74046096  0 + 122973662 C

a score=109574.000000
s hg38.chr6_GL000254v2_alt     31731 17 +   4827813 GACTCTGCAGAGCTGGA
s panTro5.chr6              29008713 15 + 175400573 GA--CTGCAGAGCTGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29252316 15 + 173848474 GA--CTGCAGAGCTGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5043201 17 +   6154872 GACTCTGCAGAGCTGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29190708 17 + 172585720 GACTCTGCAGAGCCGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28879206 17 - 170955103 GACTCTGCAGAGCCGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1853427 17 -   2996164 GACTCTGCAGAGCGGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1745210 17 -   2157725 GACTCTGCAGAGCCGGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28198367 17 -  71996105 GACTCTGCAGAGCCGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1860225 17 +   2316924 GACTCTGCAGAGCCGGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1728518 17 -   3067355 GACTCTGCAGAGCCGGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340178 17 - 171630274 GCCTCTGCAGGGGCGGA
i calJac3.chr4             C 0 I 8
s saiBol1.JH378348            146659 17 -    375362 GCCTCTGCACAGCCGGA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      110507 17 -    285216 GACTCTGCAGAGGTGGA
i aotNan1.NW_018494050v1   I 17 C 0
s otoGar3.GL873742           1486598 12 -   2232465 -----TTTGAAGCCACA
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e nomLeu3.chr1a             74046096  0 + 122973662 C

a score=132087.000000
s hg38.chr6_GL000254v2_alt     31748 17 +   4827813 CAGCGGCTGCGGAAAGG
s panTro5.chr6              29008728 17 + 175400573 CAGCGGCTGCGGAAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29252331 17 + 173848474 CAGCGGCTGCGGAAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5043218 17 +   6154872 CAGCGGCTGCGGAAAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29190725 17 + 172585720 CAGCGGCTGCGGAAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28879223 17 - 170955103 CAGCGGCTGCGGAAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1853444 17 -   2996164 CAGCGGCTGCGGAAAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1745227 17 -   2157725 CAGCGGCTGCGGAAAGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28198384 17 -  71996105 CAGCGGCTGCGGAAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1860242 17 +   2316924 CAGCGGCTGCGGAAAGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1728535 17 -   3067355 CAGCGGCTGCGGAAAGG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            146676 17 -    375362 GGGCGGCTGCGGAAAGG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      110524 17 -    285216 TGGCGGCTGCGGAAAGG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486610 16 -   2232465 CTGTGGCTG-GGAAAGG
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e calJac3.chr4             171340195  8 - 171630274 I
e nomLeu3.chr1a             74046096  0 + 122973662 C

a score=6600.000000
s hg38.chr6_GL000254v2_alt     31765 1 +   4827813 C
s panTro5.chr6              29008745 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29252348 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5043235 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28879240 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1745244 1 -   2157725 C
i cerAty1.NW_012001495v1   C 0 I 4
s chlSab2.chr17             28198401 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1860259 1 +   2316924 C
i manLeu1.NW_012104165v1   C 0 I 4
s colAng1.NW_012115566v1     1728552 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            146693 1 -    375362 C
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      110541 1 -    285216 C
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486626 1 -   2232465 C
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e calJac3.chr4             171340195 8 - 171630274 I
e macNem1.NW_012011356v1     1853461 0 -   2996164 C
e rheMac8.chr4              29190742 0 + 172585720 C
e nomLeu3.chr1a             74046096 0 + 122973662 C

a score=-550.000000
s hg38.chr6_GL000254v2_alt     31766 1 +   4827813 G
s panTro5.chr6              29008746 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29252349 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5043236 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28879241 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28198402 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1728553 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            146694 1 -    375362 G
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      110542 1 -    285216 G
i aotNan1.NW_018494050v1   C 0 T 23086
s otoGar3.GL873742           1486627 1 -   2232465 A
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e calJac3.chr4             171340195 8 - 171630274 I
e manLeu1.NW_012104165v1     1860260 4 +   2316924 I
e cerAty1.NW_012001495v1     1745245 4 -   2157725 I
e macNem1.NW_012011356v1     1853461 0 -   2996164 C
e rheMac8.chr4              29190742 0 + 172585720 C
e nomLeu3.chr1a             74046096 0 + 122973662 C

a score=9800.000000
s hg38.chr6_GL000254v2_alt     31767 5 +   4827813 AAGTt
s panTro5.chr6              29008747 5 + 175400573 AAGTt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29252350 5 + 173848474 AAGTt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5043237 5 +   6154872 AAATt
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28879242 5 - 170955103 AAATC
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28198403 5 -  71996105 AAGTC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1728554 5 -   3067355 AAGTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            146695 5 -    375362 GGGTC
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1486628 5 -   2232465 GAGTC
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      110543 23086 -    285216 T
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e calJac3.chr4             171340195 8 - 171630274 I
e manLeu1.NW_012104165v1     1860260 4 +   2316924 I
e cerAty1.NW_012001495v1     1745245 4 -   2157725 I
e macNem1.NW_012011356v1     1853461 0 -   2996164 C
e rheMac8.chr4              29190742 0 + 172585720 C
e nomLeu3.chr1a             74046096 0 + 122973662 C

a score=1883.000000
s hg38.chr6_GL000254v2_alt     31772 1 +   4827813 g
s panTro5.chr6              29008752 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29252355 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5043242 1 +   6154872 g
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28879247 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28198408 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378348            146700 1 -    375362 G
i saiBol1.JH378348         C 0 I 16455
s otoGar3.GL873742           1486633 1 -   2232465 A
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      110543 23086 -    285216 T
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e calJac3.chr4             171340195 8 - 171630274 I
e colAng1.NW_012115566v1     1728559 0 -   3067355 C
e manLeu1.NW_012104165v1     1860260 4 +   2316924 I
e cerAty1.NW_012001495v1     1745245 4 -   2157725 I
e macNem1.NW_012011356v1     1853461 0 -   2996164 C
e rheMac8.chr4              29190742 0 + 172585720 C
e nomLeu3.chr1a             74046096 0 + 122973662 C

a score=6843.000000
s hg38.chr6_GL000254v2_alt     31773 5 +   4827813 ttgta
s panTro5.chr6              29008753 5 + 175400573 ttgta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29252356 5 + 173848474 ttgta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5043243 5 +   6154872 ttgta
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28879248 5 - 170955103 CTGTA
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28198409 5 -  71996105 CTGTA
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873742           1486634 5 -   2232465 CCGCA
i otoGar3.GL873742         C 0 I 41
e saiBol1.JH378348            146701 16455 -    375362 I
e aotNan1.NW_018494050v1      110543 23086 -    285216 T
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e calJac3.chr4             171340195 8 - 171630274 I
e colAng1.NW_012115566v1     1728559 0 -   3067355 C
e manLeu1.NW_012104165v1     1860260 4 +   2316924 I
e cerAty1.NW_012001495v1     1745245 4 -   2157725 I
e macNem1.NW_012011356v1     1853461 0 -   2996164 C
e rheMac8.chr4              29190742 0 + 172585720 C
e nomLeu3.chr1a             74046096 0 + 122973662 C

a score=1500.000000
s hg38.chr6_GL000254v2_alt     31778 1 +   4827813 c
s panTro5.chr6              29008758 1 + 175400573 c
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29252361 1 + 173848474 c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5043248 1 +   6154872 c
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28879253 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28198414 1 -  71996105 C
i chlSab2.chr17            C 0 I 18
e saiBol1.JH378348            146701 16455 -    375362 I
e otoGar3.GL873742           1486639 41 -   2232465 I
e aotNan1.NW_018494050v1      110543 23086 -    285216 T
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e calJac3.chr4             171340195 8 - 171630274 I
e colAng1.NW_012115566v1     1728559 0 -   3067355 C
e manLeu1.NW_012104165v1     1860260 4 +   2316924 I
e cerAty1.NW_012001495v1     1745245 4 -   2157725 I
e macNem1.NW_012011356v1     1853461 0 -   2996164 C
e rheMac8.chr4              29190742 0 + 172585720 C
e nomLeu3.chr1a             74046096 0 + 122973662 C

a score=4318646.000000
s hg38.chr6_GL000254v2_alt     31779 7819 +   4827813 [encoded data, 7822 characters]
s panTro5.chr6              29008759 7815 + 175400573 [encoded data, 7822 characters]
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29252362 7813 + 173848474 [encoded data, 7822 characters]
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5043249 7800 +   6154872 [encoded data, 7822 characters]
i gorGor5.CYUI01015250v1   C 0 C 0
e saiBol1.JH378348            146701 16455 -    375362 I
e otoGar3.GL873742           1486639   41 -   2232465 I
e aotNan1.NW_018494050v1      110543 23086 -    285216 T
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e calJac3.chr4             171340195    8 - 171630274 I
e colAng1.NW_012115566v1     1728559    0 -   3067355 C
e manLeu1.NW_012104165v1     1860260    4 +   2316924 I
e chlSab2.chr17             28198415   18 -  71996105 I
e cerAty1.NW_012001495v1     1745245    4 -   2157725 I
e macNem1.NW_012011356v1     1853461    0 -   2996164 C
e macFas5.chr4              28879254    0 - 170955103 C
e rheMac8.chr4              29190742    0 + 172585720 C
e nomLeu3.chr1a             74046096    0 + 122973662 C

a score=229995.000000
s hg38.chr6_GL000254v2_alt     39598 2534 +   4827813 cgaatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagctgggtgtggtgacgggtgtctgtagtcccagctacttgggaggctgaggcagaagagtggcctgaacctgggaggcggagcttgcagtgagctgagatcgcgccactgcactccagcctgggcgacagagaagactgtctcaaaaaaa----------------aaaagaataattatccaagattgagggaggaggactagaggccaaccttaggtctccttggctggatggacctaggcgtcctccctctttccctggacctgtagcctaaatacttttggtgtctccacgactcaaaggcaaatagctcaaattcggccttttcttttaagagtttgaggagtgagagcagagccaagtcctggagacgctgaacttgctgtgacacgggaaaacgagatgtacggggtaagtggtagggatgaggaggaaaaagggccactcggatctttcctagggtaggagagtagccacagaggaatagaataagggtttaaacgaagtaaagtggtacgggcgtaggtttctctgcacagtgccgtatttaagggcacagaaaaagttacgggatgacaaaagaggtgagcaaggaggtctgcagggtggctattttgaacctaccaccggtttagtctggaggtggcccagtcacttggacatggggtatgacaatctaaatgccagcaatcttcatggtgccagaaatcccaaacaggcgaatgttcctcacactcgttcccgttcccgtaacaacacctgatttgtttctgacagaaaaggcaggactgggatggccagcctaagcgattgatgagaaatttaacctcctgtgataaaaaatcaacactaaagaccttgaagaagttcctgcccagacgtcttgggcagtatcgatgacctgacatacgaaactttgacaaccactaaacaggacaatagacaccgagcaggacaacaaacacaaaacaaacaatagacccttgggtatataaacaattatggtaggtttttattagacagacaaggggagggggtcccatgatgggatcagtcagatgcctgcctggccgctccccctgaggggacttgggcttctcttagcattggcaggcaggtataaacccccggctcggatggagctatgcccgatgctgccttaagccttatgaggtcgccacggaacggcaggtgagggcccactcgaactccgtagctttcgccgtggagctacaaactggggatccagaggcaggcccctggactcctcagtcgtgcacacattcacaaagagtttataacaatttttgttatttcccgttctaaacaaaggtcccagaagacctgaacgagaggaggagaagagatagagcaagggggagagaaagaaaaagaggaggagagagtgagagactagtcttaatggagaggccggcctgccagaaaccagggctctatcctccagcgtcctggagtatggatagagtcaaagagagggacaccgtcgtcagggctgcctccctctcaccaaaccagaaccaaaaggcgcctaacagaaaaaccagggctctgtcctccagcgccctggaaaagcgggcagtgtcaaagacagggatgccctcgtcagggctgcctccctctcaccaaacagaagtcaaatctaacttacctgaccccggggtcagaagctgaggactcagaggttgaattttgtgggcacacacacacggtagtcgatccgctgtcctccggaagacggtcgcctttcggggacctggaaaattttttttcaggtggctcctcgcctataagccggccgtccctccgggggagcccggagctagcccggctctcgcccagtggcgaatatatctcgctggggcttccaAAtgttgtacccgagcgagttagagaaacgccacacttcgagacgaatttaagagtccttcattagccggcgaccgacagacgactaacgctcgaaattctctcggccccgaggaaggggcttgattttcctttatactttggtttagaaaggggagggggagcttagttgcagcaattctacagaagtaaaagcatgcaaaaaaattaaaaagacaaatggttacaaggaaacaaacagttccaggtgcaggggctctaaatctatcataaggcgttaggtatgggggctctcccggacacaaactcaaagctttatggtgttatctcttgagcgaaatcctggtaacttcgtaaattgcttgcttcagtaccttatcagttaattggactctttgatatg-taagagtcagcttacacaagttaactgcttgaggaagggggtgggtaaggagtctttgacgtcttgtaaatgaaggagccaaaaggagtacttccggctttctcagctaaggaagagcctattcatgtggaaacaaggctaggCGATTAAGGGAGAGTCTAAAAACAAGGTTAGGTACTA
s gorGor5.CYUI01015250v1     5051049 2542 +   6154872 cggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaacccagtctctactaaaaatacaaaaaattagccgggtgtggcgacgggtgcctgtagtcccagctatttgggaagctgaggcagaagaatggcctgaacctgggaggcggagcttgcagtgagctgagatcgcgccactgcactccagcctgggcgacagagaagactgtctcaaaaaaaaaaaaaaaaaaaaaagaaaagaataattatccaagattgagggaggaggattggaggccaagctgaggtctccttggccggatggacctaggcgtcctccctctttccctggacctgtagcctaaatacttttggtgtctccacgactcaaaggcaaatagctcaaattcggccttttcttttaagagtttgaggagtgagagcagagccaagtcctggagacgctgaacttgctgtgacactggaaaacgagatgtacggggtaaggggtagggatgaggaggaaaaagggccactcggatctttcctagggtaggagagtagccacagaggaatagaataagagtttaaacgaagtaaagtggtactggcgtaggtttctctgcacagtgccgtatttaagggcacgggaaaagttacgggatgacaaaagaggtgagcaaggttgtctgcagggtggctattttgaacctaccaccggtttagtctggaggtggcccagtcacttggacatggggtatgacaatctaaatgccagcaatcttcatggtgccagaaatcccaaacaggcgaatgttcctcacgct------cgttcccgtaacaacacctgatttgtttctgacagaaaaggcaggactgggatggccagcctaagcgattgatgagaaatttaacctcctgtgataaaaaatcaacactaacgaccttgaagaagttcttgcccagacgtcttgggcagtatcgatgacctgacatacgaaactttgacaaccactaaacaggacaatagacaccgagcaggacaacaaacacaaaacaaacaatagacccttgggtatataaacaattatggtaggtttttattagacagacaaggggagggggtcccatgatgggatcagtcagatgcctgcctggccgctccccc-gaggggactt-ggcttctcttagcattggcaggcaggtataaacccccggctcggatggagctatgcccgatgctgccttaagccttatgaggtcgccacggaacggcaggtgagggcccactcgaactccgtagctttccccgtggagctacaaactggggatccagaggcaggcccctggactcctcagtcgtgcacacattcacaaagagtttataacaatttttcttatttcccgttctaaacaaaggtcccagaagacctgaacgagaggaggagaagagatagagcaagggggagagaaagaaagagaggaggagagagtgagagactactcttaatggagaggccggcctgccagaaaccagggctctatcctccagcgtcctggagtatggatagagtcaaagagagggacaccgtcgtcagggctgcctccctctcaccaaaccagaaccaaaagacgcctaacagaaaaaccagggctctgtcctccagcgtcctggaaaagcgggcagtgtcaaagatagggattccctcgtcagggctgcctccctctcaccaaacagaagtcaaatctaacttacctgaccccggagtcagaagctgaggactcagaggttgaattttgtgggcacacacacacggtagtcgatccgctgtcctccgcaagacggtcgcctttcggggacctggaaaaaattttttcaggtggctcctcgcctataagccggccgtccctccgggggagcccggagcgagcccggctctcgcccagtggcgaatatatctcgctggggcttccaAAtgttgtacccgagcgagttagagaaacgccacacttcaagacgaatttaagagtccttcattagccggcgaccgagagacgactaacgctcgaaattctctcggctccgaggaaggggcttgattttccttca-actttggtttagaaaggggagggggagcttagttgcagcaattctacagaagtaaaagcatgcaaaaaaattaaaaagacaaatggttacagggaaacaaacagttccaggtgcaggggctctaaatctatcataaggcgttaggtatgggggctctgccggacacaaactcaaggctttatggtgttatctcttgagcgaaatcctggtaacttcgtaaattgcttgcttcagtaccttatcagttaattggactctttgatatgttgagagtcagcttacacaagttaactgcttgaggaagggggtgggtaaggagtccttgacgtcttgtaaatgaaggagccagaaggagtacttctggctttctcagctaaggaagagcctattcatgtggaaacaaggctaggCGATTAAGGGAGAGTCTAAAAACAAGGTTAGTTACTA
i gorGor5.CYUI01015250v1   C 0 C 0
e saiBol1.JH378348            146701 16455 -    375362 I
e otoGar3.GL873742           1486639   41 -   2232465 I
e aotNan1.NW_018494050v1      110543 23086 -    285216 T
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e calJac3.chr4             171340195    8 - 171630274 I
e colAng1.NW_012115566v1     1728559    0 -   3067355 C
e manLeu1.NW_012104165v1     1860260    4 +   2316924 I
e chlSab2.chr17             28198415   18 -  71996105 I
e cerAty1.NW_012001495v1     1745245    4 -   2157725 I
e macNem1.NW_012011356v1     1853461    0 -   2996164 C
e macFas5.chr4              28879254    0 - 170955103 C
e rheMac8.chr4              29190742    0 + 172585720 C
e nomLeu3.chr1a             74046096    0 + 122973662 C
e panPan2.chr6              29260175    0 + 173848474 C
e panTro5.chr6              29016574    0 + 175400573 C

a score=2305.000000
s hg38.chr6_GL000254v2_alt     42132 5 +   4827813 CAAAG
s gorGor5.CYUI01015250v1     5053591 5 +   6154872 CAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29190742 5 + 172585720 CAAAA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     1853461 5 -   2996164 CAAAA
i macNem1.NW_012011356v1   C 0 C 0
e saiBol1.JH378348            146701 16455 -    375362 I
e otoGar3.GL873742           1486639 41 -   2232465 I
e aotNan1.NW_018494050v1      110543 23086 -    285216 T
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e calJac3.chr4             171340195 8 - 171630274 I
e colAng1.NW_012115566v1     1728559 0 -   3067355 C
e manLeu1.NW_012104165v1     1860260 4 +   2316924 I
e chlSab2.chr17             28198415 18 -  71996105 I
e cerAty1.NW_012001495v1     1745245 4 -   2157725 I
e macFas5.chr4              28879254 0 - 170955103 C
e nomLeu3.chr1a             74046096 0 + 122973662 C
e panPan2.chr6              29260175 0 + 173848474 C
e panTro5.chr6              29016574 0 + 175400573 C

a score=2865.000000
s hg38.chr6_GL000254v2_alt     42137 2 +   4827813 TC
s gorGor5.CYUI01015250v1     5053596 2 +   6154872 TC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29190747 2 + 172585720 TC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     1853466 2 -   2996164 TC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1745249 2 -   2157725 TC
i cerAty1.NW_012001495v1   I 4 C 0
s manLeu1.NW_012104165v1     1860264 2 +   2316924 TC
i manLeu1.NW_012104165v1   I 4 C 0
e saiBol1.JH378348            146701 16455 -    375362 I
e otoGar3.GL873742           1486639 41 -   2232465 I
e aotNan1.NW_018494050v1      110543 23086 -    285216 T
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e calJac3.chr4             171340195 8 - 171630274 I
e colAng1.NW_012115566v1     1728559 0 -   3067355 C
e chlSab2.chr17             28198415 18 -  71996105 I
e macFas5.chr4              28879254 0 - 170955103 C
e nomLeu3.chr1a             74046096 0 + 122973662 C
e panPan2.chr6              29260175 0 + 173848474 C
e panTro5.chr6              29016574 0 + 175400573 C

a score=9132.000000
s hg38.chr6_GL000254v2_alt     42139 7 +   4827813 GCGGTAA
s gorGor5.CYUI01015250v1     5053598 7 +   6154872 GAGGTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29190749 7 + 172585720 GCTGTAC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     1853468 7 -   2996164 GCTGTAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1745251 7 -   2157725 GCTGTAC
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     1860266 7 +   2316924 GCTGTAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1728559 7 -   3067355 GCGGTAC
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            146701 16455 -    375362 I
e otoGar3.GL873742           1486639 41 -   2232465 I
e aotNan1.NW_018494050v1      110543 23086 -    285216 T
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e calJac3.chr4             171340195 8 - 171630274 I
e chlSab2.chr17             28198415 18 -  71996105 I
e macFas5.chr4              28879254 0 - 170955103 C
e nomLeu3.chr1a             74046096 0 + 122973662 C
e panPan2.chr6              29260175 0 + 173848474 C
e panTro5.chr6              29016574 0 + 175400573 C

a score=49085.000000
s hg38.chr6_GL000254v2_alt     42146 18 +   4827813 AATCGGTGTTAACTACGT
s gorGor5.CYUI01015250v1     5053605 18 +   6154872 AATCGGTGTTAACTACGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29190756 18 + 172585720 AATCCGTGTTAAATGCGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28879254 18 - 170955103 AATCCGTGTTAAATGCGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1853475 18 -   2996164 AATCCGTGTTAAATGCGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1745258 18 -   2157725 AATCCGTGTTAAATGCGT
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     1860273 18 +   2316924 AATCCGTGTTAAATGCGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1728566 18 -   3067355 AATCCGTGTTAACTGCGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340203 18 - 171630274 AGTCGGTGTCAAGTGCGT
i calJac3.chr4             I 8 C 0
e saiBol1.JH378348            146701 16455 -    375362 I
e otoGar3.GL873742           1486639 41 -   2232465 I
e aotNan1.NW_018494050v1      110543 23086 -    285216 T
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e chlSab2.chr17             28198415 18 -  71996105 I
e nomLeu3.chr1a             74046096  0 + 122973662 C
e panPan2.chr6              29260175  0 + 173848474 C
e panTro5.chr6              29016574  0 + 175400573 C

a score=97943.000000
s hg38.chr6_GL000254v2_alt     42164 26 +   4827813 GTGCAGCCACCTTTTCCTTAGTGCTA
s gorGor5.CYUI01015250v1     5053623 26 +   6154872 GTGCAGCCACCTTTTCCTTAGTGCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29190774 26 + 172585720 GTGCAGCCACCGTTTCCTTAGTCCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28879272 26 - 170955103 GTGCAGCCACCGTTTCCTTAGTCCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1853493 26 -   2996164 GTGCAGCCACCGTTTCCTTAGTCCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1745276 26 -   2157725 GTGCAGCCACCGTTTCCTTAGTCCTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28198433 26 -  71996105 GTGCAGCCACCGTTTCCTTAGTCCTA
i chlSab2.chr17            I 18 C 0
s manLeu1.NW_012104165v1     1860291 26 +   2316924 GTGCAGCCACCGTTTCCTTAGTCCTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1728584 26 -   3067355 GTGCAGCCACCGTTTCCTTAGTCCTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340221 26 - 171630274 GTGCAGCCAGCGTCTCCGCGGTCCTA
i calJac3.chr4             C 0 T 21118
e saiBol1.JH378348            146701 16455 -    375362 I
e otoGar3.GL873742           1486639 41 -   2232465 I
e aotNan1.NW_018494050v1      110543 23086 -    285216 T
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e nomLeu3.chr1a             74046096  0 + 122973662 C
e panPan2.chr6              29260175  0 + 173848474 C
e panTro5.chr6              29016574  0 + 175400573 C

a score=1716235.000000
s hg38.chr6_GL000254v2_alt     42190 550 +   4827813 TTCCtgaaggaaataatgtatacagtgatctatttccaagacaaagtgccttaaattggcttaggtcagcaaagtacagaagaaacagggtatactaggtccctgcttggatagcggatgcctgcttgtcgcccc---cctctttcctcccccttcccatcccccatccttggtggccttcacccaaacaaaaacagtttagtctaagatataagtttactagtctgcaaaatagctcactttgtctgttcttatcagcctgcccagctacttaggtcataagtcaaacacttaaagagcccttgagctaaccaggattgcaatgcattgtgggctgcaacaaaatgcagcaagacaaccctaaaaaagagacacctaaagcctttgcctaacaatcagtaggcaaacgccgagaaaattgtaaccccatagcactcagcctatgaggaacctggggagggacttgcgcactaggggacaaattgcttgttgaaactgttctgggtgtgcctgcacgccagacacccgatcttgatctctcaagaccgtcatt
s gorGor5.CYUI01015250v1     5053649 549 +   6154872 TTCCtgaaggaaataatgtatacagtggtctatttccaagacaaagtgcctt-aattggcttaggtcagcaaagtacagaagaaacagggtatactaggtccctgcttggatagcggatgcctgcttgtcgcccc---cctctttcctcccccttcccatcccccatccttagttgccttcacccaaacaaaaacagtttagtctaagatataagtttactagtctgcaaaatagctcactttgtctgttcttatcagcctgcctagctacttaggtcataagtcaaacacttaaagagcccttgagctaaccaggattgcaatgcattgtgggctgcaacaaaatgcagcaagacaaccctaaaaaatagacacctaaagcctttgcctaacaatcagtaggcaaacgccgagaaaattgtaacctcatagcactcagcctatgaggaacctggggagggacttgcgcactaggggacaaattgcttgttgaaactgttctgggtgtgcctgcacgccagacacccgatcttgatctctcaagaccgtcatt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29190800 550 + 172585720 TTACtgaaggaaataatgtatacagtggtccatttccaagacaaagtgccttgaatcggcttaggtcagcaaagtacagaagaaaccggatatactaggcccctgcttggatagcggatgcctacttgtcgccccccgcctctttcctcccccttccccccc-ccatccttagttgctctcacccaaacgaaaacagtttagtctaagatgtaagtttactagtctgcaaaatagctcactttgtctgttcttatcagcgtgcccagctacttaggtcataagtcaaatacttaaagaacccctaagctaaccaggattgcaatgcattgtaggctgcaaaaaaatgcagcaagacaaccctaaaaaagaaacacctaaagcccttgcctaacaatcaataggcaaactccgagaaaattgtaaccccatagcactcagcctatgaggaaccaggggagggacttgcgcactaggggataaattgcttgttgaaac--ttctgggtgtgcctgcacgcccgacacccgatcttgatctcgcaagaccgtcatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28879298 550 - 170955103 TTACtgaaggaaataatgtatacagtggtccatttccaagacaaagtgccttgaatcggcttaggtcagcaaagtacagaagaaaccggatatactaggcccctgcttggatagcggatgcctacttgtcgccccccgcctctttcctcccccttccccccc-ccatccttagttgctctcacccaaacgaaaacagtttagtctaagatgtaagtttactagtctgcaaaatagctcactttgtctgttcttatcagcgtgcccagctacttaggtcataagtcaaatacttaaagaacccctgagctaaccaggattgcaatgcattgtaggctgcaaaaaaatgcagcaagacaaccctaaaaaagaaacacctaaagcccttgcctaacaatcaataggcaaactccgagaaaattgtaaccccatagcactcagcctatgaggaaccaggggagggacttgcgcactaggggataaattgcttgttgaaac--ttctgggtgtgcctgcacgcccgacacccgatcttgatctcgcaagaccgtcatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1853519 551 -   2996164 TTACtgaaggaaataatgtgtacagtggtccatttccaagacaaagttccttgaatcggcttaggtcagcaaagtacagaagaaaccggatatactaggcccctgcttggatagcggatgcctacttgtcgccccccgcctctttcctcccccttccccccctccatccttagttgctctcacccaaacgaaaacagtttagtctaagatgtaagtttactagtctgcaaaatagctcactttgtctgttcttatcagcctgcccagctacttaggtcataagtcaaatacttaaagaacccctgagctaaccaggattgcaatgcattgtaggctgcaaaaaaatgcagcaagacaaccctaaaaaagaaacacctaaagcccttgcctaacaatcaataggcaaactccgagaaaattgtaaccccatagcactcagcctatgaggaaccaggggagggacttgcgcactaggggataaattgcttgttgaaac--ttctgggtgtgcctgcacgcccgacacccgatcttgatctcgcaagaccgtcatt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1745302 547 -   2157725 TTACtgaaggaaataatgtatacagtggtccatttccaagacaaagtgccttgaatcggcttaggtcggcgaagtacagaagaaaccggatatactaggcccctgcttggaaagcggatgcctgcttgtggccccccgcctctttcctcccccttaccc----cgatccttagttgctctcacccaaacgaaaacagtttagtctaaaatataagtttactagtctgcaaaatagctcactttgtctgttcttatcagcctacccagctacttaggtcataagtcaaatacttaaagaacccctgagctaaccaggattgcaatgcattgtgggctgcaacaaaatgcagcaagacaaccctaaaaaagaaacacctaaagcccttgcctaacaatcaataggcaaactccgagaaaattgtaaccccatagcactcagcctatgaggaaccaggggagggacttgcgcactaggggataaactgcttgttgaaaa--ttctgggtgtacctgcacgcccgacacccgatcttgatctcgcaagaccgtcatt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28198459 547 -  71996105 TTACtgaaggaaataatgtatacagtggtccatttccaagacaaagtgccttaaatcggcttaagtcagcaaagtacagaagaaaccggatatactaggcccctgcttggatagtggatgcctgcttgtcgccccccacctctttcctcccccttctcc----cgatccttagttgctctcaccgaaacgaaaacagtttagtctaagatataagtttactagtctgcaaaatagctcactttctctgttcttatcagcctgcccagctacttaggtcgtaagtcaaatacttaaagaacccctgagctaaccaggattgcaatgcattgtgggctgcaacaaaatgcagcaagacaaccctaaaaaagaaacacctaaagcccttgcctaacaatcaataggcaaactccgagaaaattgtaaccccatagcactcagcctatgaggaactgggggagggacttgcgcactaggggctaaattgcttgttgaaac--ttctgggtgtgcctgcacgccctacacccgatcttgatctcgcaagaccgtcatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1860317 547 +   2316924 TTACtgaaggaaataatgtatacagtggtccatttccaagacaaagtgccttgaatcggcttaggtcggcaaagtacagaagaaaccggatatactaggcccctgcttggaaagcggatgcctgcttgtggccccccgcctctttcctcccccttcccc----cgatccttagttgctctcacccaaacgaaaacagtttagtctaaaatataagtttactagtctgcaaaatagctcactttgtctgttcttatcagcctgcccagctacttaggtcataagtcaaatacttaaagaacccctgagctaactaggattgcaatgcattgtgggctgcaacaaaatgcagcaagacaaccctaaaaaagaaacacctaaagcccttgcctaacaatcaataggcaaactccgagaaaattgtaaccccatagcactcagcctatgaggaaccaggggagggacttgcgcaccaggggataaactgcttgttgaaaa--ttctgggtgtacctgcacgcccgacacccgatcttgatctcgcaagaccgtcatt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1728610 548 -   3067355 TTACtgaaggaaataatgtatacagtggtccatttccaagacaaagtgccttgaatcggcttaggtcagcaaagtacagaagaaatcggatatactaggaccctgcttggatagcggatgcctgcttgtcgccccccgcctctttcctcccccttccctc---cgatccttagttgctctcacccaaacgaaaacagtttagtctaagatataaggttactagtccgcaaaatagctcactttgtctgttcttatcagcctgcccagctacttagatcataagtcaaatacttaaagaacccctgagctaaccaggattgcaatgcattgtgggctgcaacaaaatgcagcaagacaaccctaaaaaagaaacacctaaagcccttgcctaacaatcaataggcaaactccgagaaaattgtaaccccaaagcactcagcctatgaggaaccgggggagggacttgcgcgctaggggataaattgcttgttgaaac--ttctgtgtgtgcctgcacgcccgacacccgatcttgatctcccaagaccgtcatt
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            146701 16455 -    375362 I
e otoGar3.GL873742           1486639  41 -   2232465 I
e aotNan1.NW_018494050v1      110543 23086 -    285216 T
e cebCap1.NW_016108108v1      164643 15067 -    373274 T
e calJac3.chr4             171340247 21118 - 171630274 T
e nomLeu3.chr1a             74046096   0 + 122973662 C
e panPan2.chr6              29260175   0 + 173848474 C
e panTro5.chr6              29016574   0 + 175400573 C

a score=340661.000000
s hg38.chr6_GL000254v2_alt     42740 72 +   4827813 aaaagtctcactttcgctgttctccgggtctc-tgagtccattctttgggtttagatggatgagtttattttc
s gorGor5.CYUI01015250v1     5054198 71 +   6154872 aaaagtctcactttcgctgttctcc-ggtctcttgagtccattctttgggtttagatggatgagttta-tttc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29191350 71 + 172585720 aaaagtctcactttcgctgttctccaggtctc-tgagtccattctttgggtttggatgtttgagttta-tttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28879848 71 - 170955103 aaaagtctcactttcgctgttctccaggtctc-tgagtccattctttgggtttggatgtttgagttta-tttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1854070 71 -   2996164 aaaagtctcactttcgctgttctccaggtctc-tgagtccattctttgggtttggatgtttgagttta-tttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1745849 71 -   2157725 aaaagtctcactttcgctgttctccgggtctc-tgagtccattctttgggtttggatgtttgagttta-tttc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28199006 71 -  71996105 aaaagtctcactttcgttgttctccgggtctc-tgagtccattctttgggtttggatgtttgagttta-tttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1860864 71 +   2316924 aaaagtctcactttcgctgttctccgggtctc-tgagtccattctttgggtttggatgtttgagttta-tttc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1729158 71 -   3067355 aaaagtctcactttcgctgttctccgggtctc-tgagtccattctttgggtttggatgtttgagttta-tttc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171319129 67 - 171630274 aaaagtctcacttt-gctgtcctctgggtctc-agagtccattc---tggtttgggtgggtgagttta-tttc
i calJac3.chr4             T 21118 C 0
s cebCap1.NW_016108108v1      149576 67 -    373274 aaaagtctcacttt-gatgttcttcggatctc-agagtccattc---gggtttgggtgggtgagttta-tttc
i cebCap1.NW_016108108v1   T 15067 C 0
s aotNan1.NW_018494050v1       87457 66 -    285216 aaaagtctcacttt-gctgttctccgggtctc-agagtccattc---gggtttgggtgggtgag-tta-tctc
i aotNan1.NW_018494050v1   T 23086 C 0
e saiBol1.JH378348            146701 16455 -    375362 I
e otoGar3.GL873742           1486639 41 -   2232465 I
e nomLeu3.chr1a             74046096  0 + 122973662 C
e panPan2.chr6              29260175  0 + 173848474 C
e panTro5.chr6              29016574  0 + 175400573 C

a score=44490.000000
s hg38.chr6_GL000254v2_alt     42812 7 +   4827813 tcacaTA
s gorGor5.CYUI01015250v1     5054269 7 +   6154872 tcacaTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29191421 7 + 172585720 tcacaTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28879919 7 - 170955103 tcacaTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1854141 7 -   2996164 tcacaTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1745920 7 -   2157725 tcacaTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28199077 7 -  71996105 tcacaTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1860935 7 +   2316924 tcacaTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1729229 7 -   3067355 tcacaTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171319196 7 - 171630274 tcacaTT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      149643 7 -    373274 tcacaTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       87523 7 -    285216 tcacaTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486680 7 -   2232465 TCCTATT
i otoGar3.GL873742         I 41 C 0
e saiBol1.JH378348            146701 16455 -    375362 I
e nomLeu3.chr1a             74046096 0 + 122973662 C
e panPan2.chr6              29260175 0 + 173848474 C
e panTro5.chr6              29016574 0 + 175400573 C

a score=1890804.000000
s hg38.chr6_GL000254v2_alt     42819 309 +   4827813 ACAGCTGCAGAGGTGGTACAGGT----GAATCCCTCTCAAGTCAAGTGGGTTAACCTCAAAATTGACTTAAGGGGTGGTTTGTGATCGCCTGGTAGATGGTGGACGGTTACAGCTTTTAGAAAGTGAGTAAAAGAGATGATGCA-TACAGAAGCCCCACTGGGTTGCTTAGCTTCTGCACATGGAGAAAGAGGCTGCTTTTCTGCCTTCTAGGTGTTTAGTAACTTAATTTTTAAT--C----CTTTG-----ATGAAATAGAGTGGAAAATAAAAGGAGAT---TTTCTTTTAACA--AAATAGTGTTAAGATGCTTGCCAAGTATCCC
s gorGor5.CYUI01015250v1     5054276 308 +   6154872 ACAGCTGCAGAGGTGGTACAGGT----GAATCCCTCTCAAGTCAGGTGGGTTAACCTCAAAATTGACTTAAGGGGTGGTTTGTGATCGCCTGGTAGATGGTGGACGGTTACAGGCTTTAGAAAGTGAGTAAAAGAGATGATGCA-TACAGAAGCCCCACTGGGTTGTTTGGCTTCTGCACATGGAGAAAGAGGCTG-TTTTCTGCCTTCTAGGTGTTTAGTAACTTAATTTTTAAT--C----CTTTG-----ATGAAATAGAGCGGAAAATAAAAGGAGAT---TTTCTTTTAACA--AAATAGTGTGAAGATGCTTGCCAAGTATCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29191428 304 + 172585720 ACAGA-GCAGAGGTGGTACAGGT----GAATCCCTCTCAAGTCAAGTGAGTTAACCTCAAAATTGACTTTAGGGATGGCTTGTGATCACCTGGTAGATGGTGGACGGTTACAGCGTTT----AGTGAGTAAAAGAGATGATGCA-CACAGAAGCCCCACTGGGTTGCTTGGCTTCTGCAAATGGAGAAAGAGGCTGCTTTTCTGCCTTCTAGATGTGCAGTAACTTAATTTTTAAT--C----CTTTG-----AAGAAATAGAGCTGAAAATAAAAGGAGAT---TTTCTTTTAACA--AAATAGTGTCAAGATGCTTGCCAAGTATCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28879926 304 - 170955103 ACAGA-GCAGAGGTGGTACAGGT----GAATCCCTCTCAAGTCAAGTGAGTTAACCTCAAAATTGACTTTAGGGATGGCTTGTGATCACCTGGTAGATGGTGGACGGTTACAGCGTTT----AGTGAGTAAAAGAGATGATGCA-CACAGAAGCCCCACTGGGTTGCTTGGCTTCTGCAAATGGAGAAAGAGGCTGCTTTTCTGCCTTCTAGATGTGCAGTAACTTAATTTTTAAT--C----CTTTG-----AAGAAATAGAGCTGAAAATAAAAGGAGAT---TTTCTTTTAACA--AAATAGTGTCAAGATGCTTGCCAAGTATCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1854148 304 -   2996164 ACAGA-GCAGAGGCGGTACAGGT----GAATCCCTCTCAAGTCAAGTGAGTTAACCTCAAAATTGACTTTAGGGATGGCTTGTGATCACCTGGTAGATGGTGGACCGTTACAGCGTTT----AGTGAGTAAAAGAGATGATGCA-CACAGAAGCCCCACTGGGTTGCTTGGCTTCTGCAAATGGAGAAAGAGGCTGCTTTTCTGCCTTCTAGGTGTTCAGTAACTTAATTTTTAAT--C----CTTTG-----AAGAAATAGAGCTGAAAATAAAAGGAGAT---TTTCTTTTAACA--AAATAGTGTCAAGATGCTTGCCAAGTATCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1745927 309 -   2157725 ACAGCTGCAGAGGTGGTACAGGT----GAATCCCTCTCAAGTCAAGTGAGTTAACCTCAAAATTGACTTTAGGGATGGCTTGTGATCGCCTGGTAGATGGTGGACGGTTACAGCGTTTAGAAAGTGAGTAAAAGAGATGATGCA-TACAGAAGCCCCACTGGGTTGCTTAGCTTCTGCAAATGGAGAAAGAGGCTGCTTTTCTGCCTTCTAGGTGTCCAGTAACTTAATTTTTAAT--C----ATTTG-----AAGAAATAGAGCTGAAAATAAAAGGAGAT---TTTCTTTTAACA--AAACCGTGTCAAGATGCTTGCCAAGTATCCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28199084 309 -  71996105 ACAGCTGCAGAGGTGGTACAGGT----GAATCCCTCTCAAGTCGAGTGAGTTAACCTCAAAATTGACTTTAGGGATGGCTTGTGGTCGCCTGGTAGATGGTGGACGGTTACAGCGTTTAGAAAGTGAGTAAAAGAGATGATGCA-TACAGAAGCCCCACCGGGTTGCTTGGCTTCTGCAAATGGAGAAAGAGGCTGCTTTTCTGCCTTCTAGGTGTTCAGTAACTTAATTTTTAAT--C----CTTTG-----AAGAAATAGAGCTGAAAATAAAAGGAGAT---TTTCTTTTAACA--AAACAGTGTCAAGATGTTTGCCAAGTATCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1860942 309 +   2316924 ACAGCTGCAGAGATGGTACAGGT----GAATCCCTCTCAAGTCAAGTGAGTTAACCTCAAAATTGACTTTAGGGATGGCTTGTGATCGCCTGGTAGATGGTGGACGGTTACAGCGTTTAGAAAGTGAGTAAAAGAGATGATGCA-TACAGAAGCCCCACTGGGTTGCTTGGCTTCTGCAAATGGAGAAAGAGGCTGCTTTTCTGCCTTCTAGGTGTCCAGTAACTTAATTTTTAAT--C----CTTTG-----AAGAAATAGAGCTGAAAATAAAAGGAGAT---TTTCTTTTAACA--AAATCGTGTCAAGATGCTTGCCAAGTATCCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1729236 309 -   3067355 ACAGCTGCAGAGGTGGTACAGGT----GAATCCCTCTCAAGTCGAGTGAGTTAACCTCAAAATTGACTTTAGGGATGGCTTGTGATCGCCTGGTAGATGGTGGACGGTTACAGCGTTTAGAAAGTGAGCAAAAGAGAAGATGCA-TACAGAAGCCCCACTGGGTTGCTTGGCTTCTGCAAATGGAGAAAGAGGCTGCTTTTCTGCTTTCTAGGTGTTCAGTAACTTAATTTTTAAT--C----CTTTG-----AAGAAATAGAGCTGAAAATAAAAGGAGAT---TTTCTTTTAACA--AAACAGTGTCAAGATGCTTGCCAAGTATCCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171319203 314 - 171630274 ACAGATGCAGAGATGGCACAGGTGAATGAATCCCTCTCAAGTCAAGTGGGTTAACCTC-AAATTGACTTTAGGGAAG-GCTGTGACCCCATGGTAGATGGTGGAAGGTTACAGCGTTTAGAAAGTGAGGAAAAGAG-GGATGCA-GGCAGAAG-CCCACTGGGTTGCTTGGCTTCTGCAGATGGACGAAGAGGCTGCTTTTCTGCCTTCAGGGTGTTTAGTAACTTAATTTTTAAT--C----CTTTGTTTGAATGAAATAGAGCTGAAAATAAAAGGAGAT---TTTCTTTTAGCA--AAATAGGACTAAGATGCTTCCCAAATATCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            163156 311 -    375362 ACAGGTGCAGAG-----GCAAACAGGGGAACCCCTCAGCAGTCGGGTGGGTTGACCTC-AGATTGGGTTCAGCGACGCCCTGGTAGCGCCTGGCAGGCGGTGGACGTTT-CCGCGTTTAGAAAGTGAGTAAAAGA--GGATGCG-TACGGAAG-CCCACCCGCGTGCTTGGCTTCTGCAGATGGA--GAGAGGTCGCTTTTCTGCCTTCTGGGTGTTTACTAACGTATTTTTTTTTTCC----CTTTGTTGGCATGAAATAGAGCTGAAAATAAAAGCAGATTCATTTCTTTTAACA--AGATGGTACTGAGATGCTTGCAGAGTATTTC
i saiBol1.JH378348         I 16455 T 15462
s cebCap1.NW_016108108v1      149650 316 -    373274 ACAGCTGCAGAGATGGCACAGGTGAATGAATCCCTCTCAAGTCAAGTGGGTTAACCTC-AAATTGACTTTAGGGAAGGCTTGTGATCACCTGGTAGGTGGTGGAAGGTTACAGCGTTTAGAAAGTGAGTAAAACAGCAGATGCA-TGCGGCAG-CCCACTGGGTTGCTTGGCTTCTGCACATGGACGAAGAGGCTGCTTTTCTGCCTTCTGGGTGTTTAGTAACTTAATTTTTAAT--C----CTTCGTTGGAATGAAATAGAGCTGAAAATAAAAGGAGAT---TTTCTTTTAGCA--AAATAGGATTAAGATGCTTCCCAAATATCCG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       87530 311 -    285216 ACAGCTGCAGAGATGGCACAAGTGAATGAATCCCTCTCAAGTCAAGTGGGTTAGCCTC-AAATTGACTT-AGGGAAGGCTTGTGACCCCCTGGTAAGTGGTGGAAGGTTACAGCATTTGGAAAGTGAGTAAAAGACAGGATGCA-TGCAGAA-----ACTGGGTTGCTTGGCTTCTGCAGACGGACGAAAAGGCTGCTTTTCTGCCTTCTGGGTGTTTAGTAACTTAATTTTTAAT--C----CTTTGTTTGAATGAAATAGAGCTGAAAATAAAAGGAGAT---TTTCTTTTAGCA--AAATAGGATTAAGATGCTTACCAAATATCTC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486687 297 -   2232465 ACAGGCTCAGAGGCAAGATAGTT----GAGTCCCTCACAAGTCGACTGAGTTGACCTCAACATTGACTTTAAGCGTCCCTTGTGACCACCTGGTGGACAGTGGACAGTTACAACTTTT------TAAGAAAAAGAGAGGATACATTATGGAAG-CCCTTTGGGTTGCTTAGCTTCTACAAATGAAGAAAAAGATGGCTTTTCTGTTTTCTG-----------------TCCTCCAC--CCCCGCTTTGGTGGAAGGAAATAGGACTGGAAATAAAAAGGGGG---GTTGTTTAAAAAACAAAAGATATTAAGATGCTTGCGGAGTATCCT
i otoGar3.GL873742         C 0 C 0
e nomLeu3.chr1a             74046096   0 + 122973662 C
e panPan2.chr6              29260175   0 + 173848474 C
e panTro5.chr6              29016574   0 + 175400573 C

a score=1232851.000000
s hg38.chr6_GL000254v2_alt     43128 176 +   4827813 CCTGTGAATTTCTGCTTAGCACTGTGATATCAGAATTAGAAATTGTGC--AGGGTTCTAATCTGGAGATATGGGATGTTCAGTAGCTAAGAAGGAAGTTATTCCTTGAAAGTAAGTACAGTGAGGTAGAAAAGGATCCATTGGGATTGGGAGAATAAAAGTTCATTATTTTTATTTAT
s gorGor5.CYUI01015250v1     5054584 176 +   6154872 TCTGTGAATTTCTGCTTAGCACTGTGATATCAGAATTAGAAATTGTGC--AGAGTTCTAATCTGGAGATATGGGATGTTCAGTAGCTAAGAAGGAAGTTATTCCTTGAAAGTAAGTACAGTGAGGTAGAAAAGGATCCATTGGGATTGGGAGAATAAAAGTTCATTATTTTTACTTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29191732 178 + 172585720 TCTGTGAATTTCTGCTTAGCACTGTGATATCAGAATTAGAAATTGTGCAAAGAGTTCTAATCTGGAGTTACGGGTTGTTCAGTAGCTAAGAAGGAAGTTATTCCCGGAGAGAAAGTACAGTGAGATAGAAAAGGATCCATTGGGATTGGGAGAATAAAAGCTCATTATTTTTATTTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28880230 178 - 170955103 TCTGTGAATTTCTGCTTAGCACTGTGATATCAGAATTAGAAATTGTGCAAAGAGTTCTAATCTGGAGTTACGGGTTGTTCAGTAGCTAAGAAGGAAGTTATTCCCGGAGAGAAAGTACAGTGAGATAGAAAAGGATCCATTGGGATTGGGAGAATAAAAGCTCATTATTTTTATTTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1854452 178 -   2996164 TCTGTGAATTTCTGCTTAGCACTGTGATATCAGAATTAGAAATTGTGCAAAGAGTTCTAATCTGGAGTTACGGGTTGTTCAGTAGCGAAGAAGGAAGTTATTCCCGGAGAGAAAGTACAGTGAGATAGAAAAGGATCCATTGGGATTGGGAGAATAAAAGCTCATTATTTTTATTTAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1746236 178 -   2157725 CCTGTGAATTTCTGCTTAGCACTGTGATATCAGAATTAGAAATTGTGCAAAGAGTTCTAATCTGGAGTTATGGGTTGTTCAGTAGCTAAGAAGGAAGTTATTCCTGGAGAGTAAGTACAGTGAGATAGAAAAAGATCCATTGGGATTGGGAGAATAAAAGCTCATTATTTTTATTTAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28199393 178 -  71996105 CCTGTGAATTTCTGCTTAGCACTGTGATATCAGAATTAGAAATTGTGCGAAGAGTTCTAATCTGGAGTTACGGGTTGTTCAGTAGCCAAGAAGGAAGTTATTCCTGGAGAGTAAGTACAGTGAGGTAGAAAAAGATCCATTGGGATTGGGAGAATAAAAGCTCATTATTTTTATTTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1861251 178 +   2316924 CCTGTGAATTTCTGCTTAGCACTGTGATATCAGAATTAGAAATTGTGCAAAGAGTTCTAATCTGGAGTTATGGGTTGTTCAGTAGCTAAGAAGGAAGTTATTCCTGGAGAGTAAGTACAGTGAGATAGAAAAAGATCCATTGGGATTGGGAGAATAAAAGCTCATTATTTTTATTTAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1729545 178 -   3067355 CCTGTGAATTTCTGCTTAGCACTGTGATATCAGAATTAGAAATTGTGCAAAGAGTTCTAATCTGGAGTTATGGGTTGTTCAGTAGCTAAGAAGGAAGTTATTCCTGGAGAGTAAGTACAGTGAGATAGAAAAGGATCCATTGGGATTGGGAGAATAAAAGCTCATTATTTTTATTTAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171319517 176 - 171630274 CCTGTGAATTTCTGCTTAGTACTGTGATATCCAAATTAGAAATTGTGC--AGAGTTCCAATCTGGAGATACGAGCTGTTCAGGAGCGAAGAAGGAAGTTATTCCTAGAGAGTAAGTTCAGTGAGGTAGAAAATGATCCTCTGGGATTGGAAGAATAAAAGTTCattatttttatttat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            148005 176 -    375362 CCTGTGAATTTCTGCTTAGGACTGTGATATCCGAATTAGAAATTGTGC--AGAGTTCTAATACGGAGATATGGGTTGTTCAGTAGCTAAGAAGGAAGTTATTCCTAGAGAGTAAGTTCAGTGAGGTAGAAAATGATCCTCTGGGATTGGAAGAATAAAAGTTCATTATTTTTATTTAT
i saiBol1.JH378348         T 15462 C 0
s cebCap1.NW_016108108v1      149966 176 -    373274 CCTGTGAATTTCTGCTTAGGACTGTGATAACCGAATTAGAAATTGTGC--AGAGTTCTAATCTGGAGATATGGGTTGTTCAGTAGCTAAGAAGGAAGTTATTCCTAGAGAGTAACTTCAGTGAGGTTGAAAATGGTCCTCTGGGATTGGAAGAATAAAAGTTCATTATTTTTATTTAT
i cebCap1.NW_016108108v1   C 0 I 28
s aotNan1.NW_018494050v1       87841 176 -    285216 CCTGTGAATTTCTGCTTAGGACTGTGATATCCAAATTAGAAATTGTGC--AGAGTTCTAATCTGGAGATATGGGTTGTTCAGTAGCTAAGAAGGAAGTTATTCCTAGAGAGTAAGTTCAGTGAGGTAGAAAATGATCCTCTGGGATTGGAAGAATAAAAGTTCATTATTTTTATTtat
i aotNan1.NW_018494050v1   C 0 I 34
s otoGar3.GL873742           1486984 171 -   2232465 ATTGTGGAGTTCTCCTTA-CACTGTGATAGCAGAATCTCAAACTGCAA--GCAGTTCTGATCTGGAGACA-GGGGCGTTCAATAGTTCAGAAGAAAGATATTTCTGGAAAGTAAGTAAAGTGAGCTTTAAAAAACTTCTCTGGGATTGAGAGAATAAGAGTTCATTGTTTATTTT---
i otoGar3.GL873742         C 0 C 0
e nomLeu3.chr1a             74046096   0 + 122973662 C
e panPan2.chr6              29260175   0 + 173848474 C
e panTro5.chr6              29016574   0 + 175400573 C

a score=21455.000000
s hg38.chr6_GL000254v2_alt     43304 8 +   4827813 Taaaaaaa-
s gorGor5.CYUI01015250v1     5054760 7 +   6154872 T-AAAAAA-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29191910 8 + 172585720 TTaaaaaa-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28880408 8 - 170955103 TTaaaaaa-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1854630 8 -   2996164 TTaaaaaa-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1746414 8 -   2157725 TTAAAAAA-
i cerAty1.NW_012001495v1   C 0 I 35
s chlSab2.chr17             28199571 8 -  71996105 TTaaaaaa-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1861429 8 +   2316924 TTAAAAAA-
i manLeu1.NW_012104165v1   C 0 I 35
s colAng1.NW_012115566v1     1729723 8 -   3067355 TTaaaaaa-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171319693 5 - 171630274 ---ataaa-
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            148181 5 -    375362 ---ATAAA-
i saiBol1.JH378348         C 0 I 4
s otoGar3.GL873742           1487155 8 -   2232465 -TAAGAAAA
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       88017 34 -    285216 I
e cebCap1.NW_016108108v1      150142 28 -    373274 I
e nomLeu3.chr1a             74046096 0 + 122973662 C
e panPan2.chr6              29260175 0 + 173848474 C
e panTro5.chr6              29016574 0 + 175400573 C

a score=-5795.000000
s hg38.chr6_GL000254v2_alt     43312 2 +   4827813 -ac
s gorGor5.CYUI01015250v1     5054767 2 +   6154872 -AC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29191918 2 + 172585720 -ca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28880416 2 - 170955103 -ca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1854638 2 -   2996164 -ca
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28199579 2 -  71996105 -ca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1729731 2 -   3067355 -ca
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            148190 1 -    375362 -C-
i saiBol1.JH378348         I 4 C 0
s otoGar3.GL873742           1487163 2 -   2232465 AC-
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       88017 34 -    285216 I
e cebCap1.NW_016108108v1      150142 28 -    373274 I
e calJac3.chr4             171319698 1 - 171630274 I
e manLeu1.NW_012104165v1     1861437 35 +   2316924 I
e cerAty1.NW_012001495v1     1746422 35 -   2157725 I
e nomLeu3.chr1a             74046096 0 + 122973662 C
e panPan2.chr6              29260175 0 + 173848474 C
e panTro5.chr6              29016574 0 + 175400573 C

a score=7644.000000
s hg38.chr6_GL000254v2_alt     43314 3 +   4827813 aaa
s gorGor5.CYUI01015250v1     5054769 3 +   6154872 AAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29191920 3 + 172585720 aaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28880418 3 - 170955103 aaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1854640 3 -   2996164 aaa
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28199581 3 -  71996105 aaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1729733 3 -   3067355 aaa
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1487165 3 -   2232465 AAA
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            148191 0 -    375362 C
e aotNan1.NW_018494050v1       88017 34 -    285216 I
e cebCap1.NW_016108108v1      150142 28 -    373274 I
e calJac3.chr4             171319698 1 - 171630274 I
e manLeu1.NW_012104165v1     1861437 35 +   2316924 I
e cerAty1.NW_012001495v1     1746422 35 -   2157725 I
e nomLeu3.chr1a             74046096 0 + 122973662 C
e panPan2.chr6              29260175 0 + 173848474 C
e panTro5.chr6              29016574 0 + 175400573 C

a score=5922.000000
s hg38.chr6_GL000254v2_alt     43317 3 +   4827813 aca
s gorGor5.CYUI01015250v1     5054772 3 +   6154872 ACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29191923 3 + 172585720 aca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28880421 3 - 170955103 aca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1854643 3 -   2996164 aca
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28199584 3 -  71996105 aca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1729736 3 -   3067355 aca
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            148191 0 -    375362 C
e otoGar3.GL873742           1487168 0 -   2232465 C
e aotNan1.NW_018494050v1       88017 34 -    285216 I
e cebCap1.NW_016108108v1      150142 28 -    373274 I
e calJac3.chr4             171319698 1 - 171630274 I
e manLeu1.NW_012104165v1     1861437 35 +   2316924 I
e cerAty1.NW_012001495v1     1746422 35 -   2157725 I
e nomLeu3.chr1a             74046096 0 + 122973662 C
e panPan2.chr6              29260175 0 + 173848474 C
e panTro5.chr6              29016574 0 + 175400573 C

a score=2730.000000
s hg38.chr6_GL000254v2_alt     43320 2 +   4827813 aa
s gorGor5.CYUI01015250v1     5054775 2 +   6154872 AA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29191926 2 + 172585720 aa
i rheMac8.chr4             C 0 I 17
s macNem1.NW_012011356v1     1854646 2 -   2996164 aa
i macNem1.NW_012011356v1   C 0 I 9
s chlSab2.chr17             28199587 2 -  71996105 aa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1729739 2 -   3067355 aa
i colAng1.NW_012115566v1   C 0 I 9
e saiBol1.JH378348            148191 0 -    375362 C
e otoGar3.GL873742           1487168 0 -   2232465 C
e aotNan1.NW_018494050v1       88017 34 -    285216 I
e cebCap1.NW_016108108v1      150142 28 -    373274 I
e calJac3.chr4             171319698 1 - 171630274 I
e manLeu1.NW_012104165v1     1861437 35 +   2316924 I
e cerAty1.NW_012001495v1     1746422 35 -   2157725 I
e macFas5.chr4              28880424 0 - 170955103 C
e nomLeu3.chr1a             74046096 0 + 122973662 C
e panPan2.chr6              29260175 0 + 173848474 C
e panTro5.chr6              29016574 0 + 175400573 C

a score=273.000000
s hg38.chr6_GL000254v2_alt     43322 1 +   4827813 a
s gorGor5.CYUI01015250v1     5054777 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17             28199589 1 -  71996105 a
i chlSab2.chr17            C 0 I 12
e saiBol1.JH378348            148191 0 -    375362 C
e otoGar3.GL873742           1487168 0 -   2232465 C
e aotNan1.NW_018494050v1       88017 34 -    285216 I
e cebCap1.NW_016108108v1      150142 28 -    373274 I
e calJac3.chr4             171319698 1 - 171630274 I
e colAng1.NW_012115566v1     1729741 9 -   3067355 I
e manLeu1.NW_012104165v1     1861437 35 +   2316924 I
e cerAty1.NW_012001495v1     1746422 35 -   2157725 I
e macNem1.NW_012011356v1     1854648 9 -   2996164 I
e macFas5.chr4              28880424 0 - 170955103 C
e rheMac8.chr4              29191928 17 + 172585720 I
e nomLeu3.chr1a             74046096 0 + 122973662 C
e panPan2.chr6              29260175 0 + 173848474 C
e panTro5.chr6              29016574 0 + 175400573 C

a score=26638.000000
s hg38.chr6_GL000254v2_alt     43323 354 +   4827813 caaagaaatgaggttttggctgggtgcagtggctcacgcctgtaatcccggcactttgggaggccaaggtgggcagatcacgaggtcaggagattgagaccagcttggccaacatggtgaaaccccatctctactaaaaatacaaaaaattagccaggcgaggtggcaagtgcctgtatttccagctattcaggaggctgaggcaggagaattgcttgaacccagaaggcggagcttgcagtgagccaagatcgctccactgcagtccagcctgggcaacagagtgagacttcatctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaagaaagaaaaaag
s gorGor5.CYUI01015250v1     5054778 314 +   6154872 CAAAGAAATGAGGTTTTggctgggcgcagtggctcacgtctgtaatcccggcactttgggaggccaaggtgggcagatcccgaggtcaggagattgagaccagcctggcaaacatagtgaaaccccatctctactaaaaatacaaaaaattagccagacgtggtggcaagtgcctgtatttccagctattcgggaggctgaggcaggagaattgcttgaacccagaaggcggagcttgcagtgagccaagatcgctccactgcagtccagcctgggcaacagagtgaggcttcatctcaagaaagaaaaaaaaa----------------------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
e saiBol1.JH378348            148191   0 -    375362 C
e otoGar3.GL873742           1487168   0 -   2232465 C
e aotNan1.NW_018494050v1       88017  34 -    285216 I
e cebCap1.NW_016108108v1      150142  28 -    373274 I
e calJac3.chr4             171319698   1 - 171630274 I
e colAng1.NW_012115566v1     1729741   9 -   3067355 I
e manLeu1.NW_012104165v1     1861437  35 +   2316924 I
e chlSab2.chr17             28199590  12 -  71996105 I
e cerAty1.NW_012001495v1     1746422  35 -   2157725 I
e macNem1.NW_012011356v1     1854648   9 -   2996164 I
e macFas5.chr4              28880424   0 - 170955103 C
e rheMac8.chr4              29191928  17 + 172585720 I
e nomLeu3.chr1a             74046096   0 + 122973662 C
e panPan2.chr6              29260175   0 + 173848474 C
e panTro5.chr6              29016574   0 + 175400573 C

a score=514.000000
s hg38.chr6_GL000254v2_alt     43677 6 +   4827813 -aaaaaa
s gorGor5.CYUI01015250v1     5055092 6 +   6154872 -gaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28880424 7 - 170955103 aacaaac
i macFas5.chr4             C 0 C 0
e saiBol1.JH378348            148191 0 -    375362 C
e otoGar3.GL873742           1487168 0 -   2232465 C
e aotNan1.NW_018494050v1       88017 34 -    285216 I
e cebCap1.NW_016108108v1      150142 28 -    373274 I
e calJac3.chr4             171319698 1 - 171630274 I
e colAng1.NW_012115566v1     1729741 9 -   3067355 I
e manLeu1.NW_012104165v1     1861437 35 +   2316924 I
e chlSab2.chr17             28199590 12 -  71996105 I
e cerAty1.NW_012001495v1     1746422 35 -   2157725 I
e macNem1.NW_012011356v1     1854648 9 -   2996164 I
e rheMac8.chr4              29191928 17 + 172585720 I
e nomLeu3.chr1a             74046096 0 + 122973662 C
e panPan2.chr6              29260175 0 + 173848474 C
e panTro5.chr6              29016574 0 + 175400573 C

a score=2209.000000
s hg38.chr6_GL000254v2_alt     43683 5 +   4827813 aaaag
s gorGor5.CYUI01015250v1     5055098 5 +   6154872 aaaTG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28880431 5 - 170955103 aaaca
i macFas5.chr4             C 0 C 0
s calJac3.chr4             171319699 5 - 171630274 aaaga
i calJac3.chr4             I 1 C 0
s saiBol1.JH378348            148191 5 -    375362 AAAGA
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1487168 0 -   2232465 C
e aotNan1.NW_018494050v1       88017 34 -    285216 I
e cebCap1.NW_016108108v1      150142 28 -    373274 I
e colAng1.NW_012115566v1     1729741 9 -   3067355 I
e manLeu1.NW_012104165v1     1861437 35 +   2316924 I
e chlSab2.chr17             28199590 12 -  71996105 I
e cerAty1.NW_012001495v1     1746422 35 -   2157725 I
e macNem1.NW_012011356v1     1854648 9 -   2996164 I
e rheMac8.chr4              29191928 17 + 172585720 I
e nomLeu3.chr1a             74046096 0 + 122973662 C
e panPan2.chr6              29260175 0 + 173848474 C
e panTro5.chr6              29016574 0 + 175400573 C

a score=3685.000000
s hg38.chr6_GL000254v2_alt     43688 8 +   4827813 aagaaaCG
s gorGor5.CYUI01015250v1     5055103 8 +   6154872 AAGAAAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28880436 7 - 170955103 aaaaaac-
i macFas5.chr4             C 0 C 0
s calJac3.chr4             171319704 8 - 171630274 aataaata
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            148196 8 -    375362 AATAAATA
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1487168 8 -   2232465 AAAAAATG
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       88017 34 -    285216 I
e cebCap1.NW_016108108v1      150142 28 -    373274 I
e colAng1.NW_012115566v1     1729741 9 -   3067355 I
e manLeu1.NW_012104165v1     1861437 35 +   2316924 I
e chlSab2.chr17             28199590 12 -  71996105 I
e cerAty1.NW_012001495v1     1746422 35 -   2157725 I
e macNem1.NW_012011356v1     1854648 9 -   2996164 I
e rheMac8.chr4              29191928 17 + 172585720 I
e nomLeu3.chr1a             74046096 0 + 122973662 C
e panPan2.chr6              29260175 0 + 173848474 C
e panTro5.chr6              29016574 0 + 175400573 C

a score=35157.000000
s hg38.chr6_GL000254v2_alt     43696 10 +   4827813 AGCTTCTACC
s gorGor5.CYUI01015250v1     5055111 10 +   6154872 AGCTTTTACC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29191945 10 + 172585720 aGCTTTTACC
i rheMac8.chr4             I 17 C 0
s macFas5.chr4              28880443 10 - 170955103 aGCTTTTACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1854657 10 -   2996164 AGCTTTTACC
i macNem1.NW_012011356v1   I 9 C 0
s cerAty1.NW_012001495v1     1746457 10 -   2157725 aGCTTTTACC
i cerAty1.NW_012001495v1   I 35 C 0
s chlSab2.chr17             28199602 10 -  71996105 AGCTTTTACC
i chlSab2.chr17            I 12 C 0
s manLeu1.NW_012104165v1     1861472 10 +   2316924 aGCTTTTACC
i manLeu1.NW_012104165v1   I 35 C 0
s colAng1.NW_012115566v1     1729750 10 -   3067355 AGCTTTTACC
i colAng1.NW_012115566v1   I 9 C 0
s calJac3.chr4             171319712  9 - 171630274 aGCTTTTCT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            148204  9 -    375362 AGCTTTTCT-
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1487176  9 -   2232465 AGCTTTGCT-
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       88017 34 -    285216 I
e cebCap1.NW_016108108v1      150142 28 -    373274 I
e nomLeu3.chr1a             74046096  0 + 122973662 C
e panPan2.chr6              29260175  0 + 173848474 C
e panTro5.chr6              29016574  0 + 175400573 C

a score=9523.000000
s hg38.chr6_GL000254v2_alt     43706 2 +   4827813 CT
s gorGor5.CYUI01015250v1     5055121 2 +   6154872 CT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29191955 2 + 172585720 CT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28880453 2 - 170955103 CT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1854667 2 -   2996164 CT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1746467 2 -   2157725 CC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28199612 2 -  71996105 CT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1861482 2 +   2316924 CC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1729760 2 -   3067355 CT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171319721 2 - 171630274 CT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            148213 2 -    375362 CT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      150170 2 -    373274 CT
i cebCap1.NW_016108108v1   I 28 C 0
s otoGar3.GL873742           1487185 2 -   2232465 GT
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       88017 34 -    285216 I
e nomLeu3.chr1a             74046096 0 + 122973662 C
e panPan2.chr6              29260175 0 + 173848474 C
e panTro5.chr6              29016574 0 + 175400573 C

a score=2609081.000000
s hg38.chr6_GL000254v2_alt     43708 397 +   4827813 AGATGGATCTTGGACTCTGGAGTTCAGAGAGCTTGCCATTTCAGACCAGAAACTTCCTTAAAGAACCAAGAGAAGTAAT-TTTCTCCCTGCTAAATTTCAGCTGAGGTGATTGAGATCTTTTCCtcatttgtcattatatttgtcatttgtccttatgtTTGTAGTTAAATAGCTTGGATTAAGTTTCAGAATTTGTCGGTCTCTAATGGAAAAAGTGACCACCAGCACATCACCAGCAATCATCAGCCACTTGTAGTGGAATCTTTTAGTGAAAGCTTGCAGGAC---TTTTGCAACCTGGGTGAGGAAGCAG------------------TTAGAA-----GAAAGTAAGAAACGCAAAAGAACTTGAGCCTTAACCTTCTGATCTGAAATCAGACTTAGGTCACAGAATTCAATGGTTTCT
s gorGor5.CYUI01015250v1     5055123 397 +   6154872 AGATGGATCTTGGACTCTGGAGTTCAGAGAGCTTGGCATTTCAGACCAGAAACTTCCTTAAAGAACCAAGAGAAGTAAT-TTTCTCCCTGCTAAATTTCAGCCGAGGTGATTGAGATATTTTCCtcatttgtcattatatttgtcatttgtctttatgtttgtagttaaatAGCTTGGATTCAGTTTCAGAATTTGTGGGTCTCTAACGGAAAAAGTGATCACCAGCACATCACCAGCAATCATCAGCCACTTGTAGTGGAATCTTTTAGTGAAAGCTGGCAGGAC---TTTTGCAACCTAGGTGAGGAAGCAG------------------TTAGAA-----GAAAGTAAGAAAcacaaaagaacttgagccttaaccttctgatctgaaatcagacTTAGGTCACAGAATTCAATGGTTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29191957 396 + 172585720 AGATGGATCTTGGACTCTGGAGTTCAGAGAGCTTGACATTTCAGACCAGAAACTTCCTCAAAGAACCCAGAGAAGTAAT-TTTCTTCCTGCCAAATTTCAGCTGAGGTGATTGAGATCTTTTCCTCATTTGTCATTGTATTGGTTATTTGTCGTTATGTTTGTAGCTAAATAGTTTGGATTAAGTTTCAGAGTTTGTGGGTCTCTAACAGAAAAAGTGACCACCAGCACATCACCAGCAATCATCAACCACTGGTAGTGGAATCTTTGGGTGAAAACTTGCAGGAC---TTTTGCAACCT-GGTGAGGAAGCAG------------------TTAGAA-----GAAAGTAAGAAACACAAAAGAACTTGAGCCTTAACCTTCGGATCTGAAATCAGACTTAGGTCACAGAATTCCATGGTTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28880455 396 - 170955103 AGATGGATCTTGGACTCTGGAGTTCAGAGAGCTTGACATTTCAGACCAGAAACTTCCTCAAAGAACCCAGAGAAGTAAT-TTTCTTCCTGCCAAATTTCAGCTGAGGTGATTGAGATCTTTTCCtcatttgtcattgtattggttatttgtcgttatgtTTGTAGCTAAATAGTTTGGATTAAGTTTCAGAGTTTGTGGGTCTCTAACAGAAAAAGTGACCACCAGCACATCACCAGCAATCATCAACCACTGGTAGTGGAATCTTTGGGTGAAAACTTGCAGGAC---TTTTGCAACCT-GGTGAGGAAGCAG------------------TTAGAA-----GAAAGTAAGAAACACAAAAGAACTTGAGCCTTAACCTTCGGATCTGAAATCAGACTTAGGTCACAGAATTCCATGGTTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1854669 396 -   2996164 AGATGGATCTTGGACTCTGGAGTTCAGAGAGCTTGACATTTCAGACCAGAAACTTCCTCAAAGAACCCAGAGAAGTAAT-TTTCTTCCTGCCAAATTTCAGCTGAGGTGATTGAGATCTTTTCCtcatttgtcattgtattggttatttgtcgttatgtTTGTAGCTAAATAGTTTGGATTAAGTTTCAGAGTTTGTGGGTCTCTAACAGAAAAAGTGACCACCAGCACATCACCAGCAATCATCAACCACTGGTAGTGGAATCTTTGGGTGAAAACTTGCAGGAC---TTTTGCAACCT-GGTGAGGAAGCAG------------------TTAGAA-----GAAAGTAAGAAACACAAAAGAACTTGAGCCTTAACCTTCGGATCTGAAATCAGACTTAGGTCACAGAATTCCATGGTTTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1746469 397 -   2157725 AGATGGATCTTGGACTCTGGAGTTCAGAGAGCTTGACATTTCAGACCAGAAACTTCCTTAAAGAACCCAGAGAAGTAAT-TTTCTCCCTGCCAAATTTCAGCTGAGGTGATTGAGATCTTTTCCtcatttgtcattgtattggttatttgtcgttatgtTTGTAGCTAAATAGTTTGGATTAAGTTTCAGAGTTTGTGGGTCTCTAACAGAAAAAGTGACCACCAGCACGTCACCAGCAATCATCAACTACTAGTAGTGGAACCTTTTGGTGAAAACTTGCAGGAC---TTTTGCAACCTGGGTGAGGAAGCAG------------------TTAGAA-----GAAAGTAAGAAAcacaaaagaacttgagccttaaccttctgatctgaaatcagacTTAGGTCACAGAATTCCATGGTGTCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28199614 393 -  71996105 AGATGGATCTTGGACTCTGGAGTTCAGAGAGCTTGACATTTCAGACCAGAAACTTCCTTAAAGAACTCAGAGAAGTAAT-TTTCTCCCTGCCAAATTTCAGCTGAGGTGATTGAGA--TTtttctcatttgtcattgtgttggttatttgtcgttatgtTTGTAGCTAAATAGTTTGGATTAAGTTT--GAGTTTGTGGGTCTCTAACAGAAAAAGTGACCACCAGCACGTCACCAGCAATCATCAACTACTGGTAGTGGAATCTTTTGGTGAAAACTTGCAGGAC---TTTTGCAACCTGGGTGAGGACGCAG------------------TTAGaa-----gaaagaaagaaacacaaaagaaCTTGAGCCTTAACTTTCTGATCTGAAATCAGACTTAGGTCACAGAATTCCATGGAGTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1861484 397 +   2316924 AGATGGATCTTGGACTCTGGAGTTCAGAGAGCTTGACATTTCAGACCAGAAACTTCCTTAAAGAACCCAGAGAAGTAAT-TTTCTCCCTGCCAAATTTCAGCTGAGGTGATTGAGATCTTTTCCTCATTTGTCATTGTATTGGTTATTTGTCGTTATGTTTGTAGCTAAATAGTTTGGATTAAGTTTCAGAGTTTGTGGGTCTCTAACAGAAAAAGTGACCACCAGCACGTCACCAGCAATCATCAACTACTGGTAGTGGAATCTTTTGGTGAAAACTTGCAGGAC---TTTTGCAACCTGGGTGAGGAAGCAG------------------TTAGAA-----GAAAGTAAGAAAcacaaaagaacttgagccttaaccttctgatctgaaatcagacTTAGGTCACAGAATTCCATGGTGTCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1729762 391 -   3067355 AGAGGGCTCTTGGACTCTGGAGTTCAGAGAGCTTGACATTTCAGACCAGAAACTTCCTTAAAGAACCCAGAGAAGTAAT-TTTCTCCCTGCCAAATTTCAGCTGAGGTGATT------TTTTCTtcatttgtcattgtattggttatttgtcgttatgtTTGTAGCTAAATAGTTTGGATTAAGTTTCAGAGTTTGTGGGTCTCTAACAGAAAAAGTGACCACCAGCACATCACCAGCAATCATCAACCACCGGCAGTGGAATCTTTTGGTGAAAACTTGCAGGAC---TTTTGCAACCTGGGTGAGGAAGCAG------------------TTAGAA-----GAAAGTAAGAAACACAAAAGAACGTGAGCCTTAACCTTCTGATCTGAAATCACACTTAGGTCACAGAATTCCATGGTGTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171319723 389 - 171630274 AGATGGATCTTGGACCCTGGAACTCAGAGAGCTTGCAATTTCAGACCAGGAACTTTCTTAAAAGACCCAGAGAAGTAAT-TTTCTCCCTACCAAATTTCAGCTGAGGTGATTGAGATC-TTTCGTCATTTGTCATTACGTTTGTTATTTGTTGTTACGTTTGTAGTTAAATAGTTTGGACTGAATTTCAGAGTTTGTGGGTCTCTAGTGGAAAACGTGACCACCAGTGCATCGCCAGCAATCATTAACCACTGGCAGTGGAATC-CTTTATGAAAGCTTTTAGGGC---TTTTGTAACCCGGGCAAGGAAGCAG------------------TTAG---------AAGAAAGAAA--CAAAAGAACTTGAGCCTTAACCTTCTGATCTAAAATCAGACTTAGGTCACAGAATTCCATGGTTTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            148215 395 -    375362 AGATGGATCTTGGACTCTGGAGTTCAGAGAGCTTGCAATTTCAGACCAGAAACTTCCTTAAAAGACCCAGAGAAGTAAT-TTTCTCCCTACCAAATTTCAGCTGAGGTGATTGAGATCTTTTCCTCATTTGTCATTATGTTTGTTATTTGTTGTTATGTTTGTAGTTAAATAGTTTGGACTGAATTTCAGAGTTTGTGAGTCTCTAGTGGAAAATGTGACCACCAGCGCATCGCCAGCAATCATCAACCACTGGCAGTGGAATCTTTTTGTGAAAGCTTGTAGGGC---TTTTGCGACCTGGGTGAGGAAGCAG------------------TTAGAA-----CAAAGTAAGAAG--CAAAAGAACTTGAGCCTTAACCTTCTGATTTAAAATCAGACTTAGGTGACAGAATTCCATGGTTTCT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      150172 392 -    373274 AGATGGATCTTGGACTCTGGAGTTCAGAGAGCTTGCAATTTCAGACCAGAAACTTCCTTAAAAGACCCAGAGAAGTAAT-TTTCTCCCTACCAAATTTCAGCTGAGGTGATTGAGATCTTTTCCTCATTTGTCATTATGTTTGTTAT---TTGTTATGTTTGTAGTTAAATAGTTTGGACTGAATTTCAGAGTTTGTTGGTCTCTAGTGGAAAATGTGACCACCAGCGCATCGCCAGCAATCATCAACCACTGGCAGTGGAATCTTTTAGTGAAAGCTTATAGGGC---TTTTGCAACCTGGGCGAGGAAGCAG------------------TTAGAA-----GAAAGTAAGAAA--CAAAAGAACTTGAGCCTTAACCCTCTGATCTAAAATCAGACGTAGGTGACAGAATTCCATGGTTTCT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       88051 391 -    285216 AGATGGATC-TGGACTCTGGAGTTCAGAGAGCTTACAATTTCAGACCAGAAACTTCCTTAAAAGACCCAGAGAAGTAAT-TGTCTCCCTACCAAATTTCAGCTGAGGTGATTGAGATCTTTTCCTCatttgtcattgtgtttgttatttgttgttatgtttgtagttaAATAGTTTGGAATGAATTTCAGAGTCTGTGGGTCTCTAGGGGGAAATGTGACAGCCAGCGCATCGCCAGCAATCACCAGCCACTGGCAGTGGAATCCTTTAGTGAAAGCTTGTAGGGC---TTTTGCAACCTGGGCGAGGAAGCAG------------------TTAGAA-----GAAAGTAAGAAA--CAAAAGA---CGAGCCTTAACCTTCTGATCTAAAATCAGACTTAGGTGACAGAATTCCATGGTTTCT
i aotNan1.NW_018494050v1   I 34 C 0
s otoGar3.GL873742           1487187 361 -   2232465 -----------AGACT------------GAACTTGCCATTTCAGATCAGACACTTCCTTAGAAGACCCAGAGAAGTACTATTTCCCTTTACCAAATTTCAGCGGAAGTGACTG------CCGTCTCATTTGTC--------------------CTATGTTTGTAGTTAAATTGTTTATGTTAAGCTTCAGAGTTTGTGGGTCTCTGACAGAAAAAGTAACCATCACCACATCA-----AACTGTCAACCACTGGCAGCGAAA---TGGAATGAAAGATTTAGTGACAGTTTCTGCAAGCAGGTTTAGGAAGAAgcggctcacgcctgtaatcccagcaacttgggaggcccgaag--cgggagaatt---gcctgaactgacagattcgagaccagac-caagccagagagacacctcgtctct
i otoGar3.GL873742         C 0 I 319
e nomLeu3.chr1a             74046096   0 + 122973662 C
e panPan2.chr6              29260175   0 + 173848474 C
e panTro5.chr6              29016574   0 + 175400573 C

a score=943511.000000
s hg38.chr6_GL000254v2_alt     44105 163 +   4827813 GACTATTTTATTTAAACTGGAAATCGGCGGGATGGCAAGGAATACTACT--------TGCTTCTATAGTGTGTGATCCACATTAGTGATTTGTGGAACTAATT----AGGACAGGGGGATAATTCTAAGCAACAAAGAACTGTAAGTGAATGAACACGAATTATCTCCCTGTATG
s gorGor5.CYUI01015250v1     5055520 163 +   6154872 GACTATTTTATTTAAACTGGAAATTGGCGGGTTGGCAAGGAATACTACT--------TGCTTCTATAGTGTGTGATCCACATTAGTGATTTGTGGAACTAATT----AGGACAGGGGGATAATTCTAAGCAACAAAGAACTGTAAGTGAATGAACACGAATTAGCTCCCTGTATG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29192353 158 + 172585720 GAAGATTTCATTTAAGCTGGAAATTGGCTGGATGGCAAGGAATACTACT--------TGCTTCTATAGTGCGTAATCCACGTTAGTGATTTGTGGAACTACTT---------AGGTGGATAATCCTAAGCAACAAATAACTGTAAGTGAATGAACACGAATTACTTTCCTGTATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28880851 158 - 170955103 GAAGATTTCATTTAAGCTGGAAATTGGCTGGATGGCAAGGAATACTACT--------TGCTTCTATAGTGCGTAATCCACGTTAGTGATTTGTGGAACTACTT---------AGGTGGATAATCCTAAGCAACAAATAACTGTAAGTGAATGAACACGAATTACTTTCCTGTATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1855065 158 -   2996164 GAAGATTTCATTTAAGCTGGAAATTGGCTGGATGGCAAGGAATACTACT--------TGCTTCTATAGTGCGTAATCCACGTTAGTGATTTGTGGAACTACTT---------AGGTGGATAATCCTAAGCAACAAATAACTGTAAGTGAATGAACACGAATTACTTTCCTGTATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1746866 158 -   2157725 GAAAATTTCATTTAAGCTGGAAATCGGCTGGATGGCAAGGAATACTACT--------TGCTTCTATAGTGCGTGATCCACGTTAGTGATTTGTGGAACTACTT---------AGGTGGATAATCCTAAGCAACAAATAACTGTAAGTGAATGAACACGAATTACCTCCCTGTATG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28200007 158 -  71996105 GAAAATTTCATTTAAGCTGGAAATGGGCTGGATGGCAAGGAATACTACT--------TGCTTCTATAGTGCGTGATCCACGTTAGTGATTTGTGTAACTACTT---------AGGTGGATAATCCTAAGCAACAAATAACTGTAAGTGAATGAACACGAATTACCTCCCTGTATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1861881 158 +   2316924 GAAAATTTCATTTAAGCTGGAAATCGGCTGGATGGCAAGGAATACTACT--------TGCTTCTATAGTGCGTGATCCACGTTAGTGATTTGTGGAACTACTT---------AGGTGGATAATCCTAAGCAACAAATAACTGTAAGTGAATGAACACGAATTACCTCCCTGTATG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1730153 158 -   3067355 GAAAATTTCATTTAAGCTGGAAATCGGCTGGATGGCAAGGAATACTACT--------TGCTTCTATAGTGCGTGATCCACGTTAGTGATTTGTGGAACTACTT---------AGGTGGATAATCCTAAGAAACAAATAACTGTAAGTGAATGAACACGAATTACCTCCCTGTATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171320112 167 - 171630274 GATGATTTCATGTAAACTGGAAACCAGCTCGATGGCAAGGAATACTACT--------TGCTTCTATAGAGCGTGATCCATGTTGGTGATCGCTGGAACTCCTTAGAGAGGAGAGGTGGATAATCCTAAGCAACAAATAACCTTAAGTGAATGAACATGAATAACCTCCCTGTACG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            148610 175 -    375362 GATGATTTCATGTAAACTGGAAATCGGCTCAATGGCAAGGAATGCTTCTACAGAGCATGCTTCTACAGAGCATGATCCACATTGGTGATTGCTGGAACTATTTAGAGAGGAGAGATGGATAATCCTAAGCAACGAATAACCTTAAGTGAATCAACATGAATTACCTCCCTGTATG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      150564 167 -    373274 GATGATTTCATGTAAACTGGAAATCGGCTCAATGGCAAGGAATACTACT--------TGCTTCTACAGAGTGTGATCCACGTTGGTGATTGCTGGAACTACTTAGAGAGAAGAGGTGGATAATCCTAAGCAACAAATAACCTTAAGTGAATGAACATGAATTACCTCACTGTATG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       88442 167 -    285216 GATGACTTCATGTAAACTGGAAATCGGTTCGATAGCAAGGAATACTACT--------TGCTTCTACAGAGCATGATCCACGTTGGTGATTGCTGGAACGACTTAGAGAGGAGAGGTGGATAATCCTAAGCAACAAATAACTTTAAGTGAATGAACATGAATTACCTCCCTCTATG
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1487548 319 -   2232465 I
e nomLeu3.chr1a             74046096   0 + 122973662 C
e panPan2.chr6              29260175   0 + 173848474 C
e panTro5.chr6              29016574   0 + 175400573 C

a score=378849.000000
s hg38.chr6_GL000254v2_alt     44268  63 +   4827813 AGAGAGA---------------------------------AATGCAG--AGGCCAACACAATTC-CCTTGAATAGGTGGGGAA---TATCATGGAGAACTTC-----------
s gorGor5.CYUI01015250v1     5055683  63 +   6154872 AGAGAGA---------------------------------AATGCAG--AGGCCAACACAATCC-CCTTGAATAGGTGGGGAA---TATCATGGAGAACTTC-----------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29192511  64 + 172585720 AGAGAGA---------------------------------AATGCAG--AGGCCAACACAATTCACCTTGAATAAGTGGGGAA---TATCATGGAGAACTTC-----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28881009  64 - 170955103 AGAGAGA---------------------------------AATGCAG--AGGCCAACACAATTCACCTTGAATAAGTGGGGAA---TATCATGGAGAACTTC-----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1855223  64 -   2996164 AGAGAGA---------------------------------AATGCAG--AGGCCAACACAATTCACCTTGAATAGGTGGGGAA---TATCATGGAGCACTTC-----------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1747024  64 -   2157725 AGAGAGA---------------------------------AATGCAG--AGGCCAACACAATTCACCTTGAATAGGTGGGGAA---CATCATGGAGAACTTC-----------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28200165  64 -  71996105 AGAGAGA---------------------------------AATGCAG--AAGCCAACACAATTCACCTTAAATAGGTGGGGAA---TATCATGGAGAACTTC-----------
i chlSab2.chr17            C 0 I 10
s manLeu1.NW_012104165v1     1862039  64 +   2316924 AGAGAGA---------------------------------AATGCAG--AGGCCAACACAATTCACCTTGAATAGGTGGGGAA---TATCATGGAGAACTTC-----------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1730311  64 -   3067355 AGAGAGA---------------------------------AATGCAG--AGGCCAACACAATTCACCTTGAATAGGTGGGGAA---TGTCATGGAGAACTTC-----------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171320279  63 - 171630274 AGAGAGT---------------------------------AATGCAG--AGGCTAACAC-GTTCACTTTGAATAGGTGGGGAA---TATGATGGAGAACTTC-----------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            148785  63 -    375362 AGACAGT---------------------------------AGTTCGG--AGGCCAACAC-ATTCACTTTGAATGGGTGGGGAA---TATAATGGAGAACTTC-----------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      150731  63 -    373274 AGAGAGT---------------------------------AATGCGG--AGGCCAACAC-ATTCAATTTGAATAGGTGAGGAA---TATGATGGAGAACTTC-----------
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       88609  63 -    285216 AGAGAGT---------------------------------AATGCAG--ATGCCAACAC-ATTTACTTTGAATAGGTGGGGAA---TATGATGGAGAACTTC-----------
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1487867 113 -   2232465 AGAGAGAGTAGGAGGGAATTTGAATTTGGATTGAGAAACTAATACAGAAAGGCTAACAGAACTCTGCTTGTCAAGGTAGTGTATTGTATTTTGGAGAGCTGGAGAAAGGAATT
i otoGar3.GL873742         I 319 C 0
e nomLeu3.chr1a             74046096   0 + 122973662 C
e panPan2.chr6              29260175   0 + 173848474 C
e panTro5.chr6              29016574   0 + 175400573 C

a score=91368.000000
s hg38.chr6_GL000254v2_alt     44331 28 +   4827813 CTAAGG------TGGCTCATAGG------------AAAAAAAAGAg
s gorGor5.CYUI01015250v1     5055746 29 +   6154872 CTAAGG------TGGCTCATAGG-----------AAAAAAAAAGAg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29192575 27 + 172585720 CTGCAG------TTGCTCATAGG-------------AAAAAAAGgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28881073 27 - 170955103 CTGCAG------TTGCTCATAGG-------------AAAAAAAGgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1855287 27 -   2996164 CTGCAG------TTGCTCATAGG-------------AAAAAAAGgg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1747088 27 -   2157725 CTCCAG------TCGCTCATAGG-------------AAAAAAAGgg
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     1862103 27 +   2316924 CTCCAG------TCGCTCATAGG-------------AAAAAAAGgg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1730375 31 -   3067355 CTACAG------TTGCTTATAGGA---------AAAAAAAAAAGgg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171320342 28 - 171630274 CTACAG------TGGATCATAGGG------------AAAAAAAGAg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            148848 31 -    375362 CTACAG------TGGATCATAGGG---------AAAAAAAAAAGAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      150794 29 -    373274 CTACAA------TGGATCATAGGG-----------AAAAAAAAGAg
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       88672 28 -    285216 CTACAG------TGGATCATAGGG------------GAAAAAAGAG
i aotNan1.NW_018494050v1   C 0 I 14330
s otoGar3.GL873742           1487980 45 -   2232465 -TAAAGAGTGCTTCTCTTACAGGCCTTTGTGAAGGAAGATGAAGAA
i otoGar3.GL873742         C 0 I 11
e chlSab2.chr17             28200229 10 -  71996105 I
e nomLeu3.chr1a             74046096  0 + 122973662 C
e panPan2.chr6              29260175  0 + 173848474 C
e panTro5.chr6              29016574  0 + 175400573 C

a score=25212.000000
s hg38.chr6_GL000254v2_alt     44359 4 +   4827813 tgga
s gorGor5.CYUI01015250v1     5055775 4 +   6154872 tgga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29192602 4 + 172585720 tgga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28881100 4 - 170955103 tgga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1855314 4 -   2996164 tgga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1747115 4 -   2157725 tgga
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     1862130 4 +   2316924 tgga
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1730406 4 -   3067355 tgga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171320370 4 - 171630274 tgga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            148879 4 -    375362 TGGA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      150823 4 -    373274 tgga
i cebCap1.NW_016108108v1   C 0 I 4248
s otoGar3.GL873742           1488036 4 -   2232465 tgga
i otoGar3.GL873742         I 11 C 0
e aotNan1.NW_018494050v1       88700 14330 -    285216 I
e chlSab2.chr17             28200229 10 -  71996105 I
e nomLeu3.chr1a             74046096 0 + 122973662 C
e panPan2.chr6              29260175 0 + 173848474 C
e panTro5.chr6              29016574 0 + 175400573 C

a score=149857.000000
s hg38.chr6_GL000254v2_alt     44363 38 +   4827813 aatactggaagttgaacgcaggacctcacgcatgctaa
s gorGor5.CYUI01015250v1     5055779 38 +   6154872 aatactggaagttgaacgcaggacctcatgcatgctaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29192606 38 + 172585720 aatactggaaattgaacccaggacctcatgcatgctaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28881104 38 - 170955103 aatactggaaattgaacccaggacctcatgcatgctaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1855318 38 -   2996164 aatactggaaattgaacccaggacctcatgcatgctaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1747119 38 -   2157725 aatactggaaactgaacccaggacctgatgcatgctaa
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     1862134 38 +   2316924 aatactggaaactgaacccaggacctcatgcatgctaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1730410 38 -   3067355 aatactagaaattgaacccaggacctcatgcatgctaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171320374 38 - 171630274 ggcattggggattgaatccagggcctcccacatgctaa
i calJac3.chr4             C 0 I 20972
s saiBol1.JH378348            148883 38 -    375362 GGCTTTGGGGATTGAATCCAGGGCCTCCCACACCCTAA
i saiBol1.JH378348         C 0 I 15408
s otoGar3.GL873742           1488040 38 -   2232465 ggtactggggattgaacccaggacctcgtgcatgctaa
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       88700 14330 -    285216 I
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e chlSab2.chr17             28200229 10 -  71996105 I
e nomLeu3.chr1a             74046096  0 + 122973662 C
e panPan2.chr6              29260175  0 + 173848474 C
e panTro5.chr6              29016574  0 + 175400573 C

a score=181622.000000
s hg38.chr6_GL000254v2_alt     44401 61 +   4827813 ccacgtgctctgtccctgagctatacccccGC-AGGAGATCAGGAGCTTGGGAAAATGTTTT-----
s gorGor5.CYUI01015250v1     5055817 61 +   6154872 ccacgtgctctatccctgagctatacccccTC-AGGAGATCAGGAGCTTGGGAAAATGCTTT-----
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29192644 61 + 172585720 tcaggtgctttatccctgagctatacccccTC-ATGAGATCAGGAGCTTGGGAAAATGCTTT-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28881142 61 - 170955103 tcaggtgctttatccctgagctatacccccTC-ATGAGATCAGGAGCTTGGGAAAATGCTTT-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1855356 61 -   2996164 tcaggtgctttatccctgagctatacccccTC-ATGAGATCAGGAGCTTGGGAAAATGCTTT-----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1747157 61 -   2157725 tcagatgctttatccctgagctatatccccTC-ATGAGATCAGGAGCTTGGGAAAATGCTTT-----
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     1862172 61 +   2316924 tcagatgctttatccctgagctatatccccTC-ATGAGATCAGGAGCTTGGGAAAATGCTTT-----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1730448 61 -   3067355 tcaggtgctttatccctgagctacacccccTC-ATGAGACCAGGAGCTTGGGAAAATGCTTT-----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171341384 57 - 171630274 gtacatgctctatcactgggctatatccccTC-ACAACTCCTGTGTATTTGGAAAGCT---------
i calJac3.chr4             I 20972 C 0
s saiBol1.JH378348            164329 57 -    375362 gcatgcgctctaccactgagctacacccccTT-GGGAAATGCGTGCCTTCTGAAAACC---------
i saiBol1.JH378348         I 15408 C 0
s otoGar3.GL873742           1488078 65 -   2232465 gcacgcgctctaccactgagctatacccccTCTTTGAGA--AGTATCTTTCAAGAAACCCTTTGATT
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       88700 14330 -    285216 I
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e chlSab2.chr17             28200229 10 -  71996105 I
e nomLeu3.chr1a             74046096  0 + 122973662 C
e panPan2.chr6              29260175  0 + 173848474 C
e panTro5.chr6              29016574  0 + 175400573 C

a score=365672.000000
s hg38.chr6_GL000254v2_alt     44462 92 +   4827813 GGTGATCTCCGTTGCCTGAGTCTGTGCTCTGTGTCATCAAGACAATCACTGTATGTTTCCAATTCCACTGTTTATGAATTCCCGACACTAAG
s gorGor5.CYUI01015250v1     5055878 92 +   6154872 GGTGATCTCCGTTGCCTGAGTCTGTGCTCTATGTCACCAAGACAATCAATGTATGTTTCCAATTCCACTGTTTATGAATTCCCGACACTAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29192705 92 + 172585720 GGTGATCGCCGTTGTCTGAGTCTGTGCTCTATGTTATCATGACAATCACTGTAAGTCTCCAATTCCACTGTTTATGAATTCCCGACACTAAG
i rheMac8.chr4             C 0 I 2
s macFas5.chr4              28881203 92 - 170955103 GGTGATCGCAGTTGTCTGAGTCTGTGCTCTATGTTATCATGACAATCACTGTAAGTCTCCAATTCCACTGTTTATGAATTCCCGACACTAAG
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1     1855417 92 -   2996164 GGTGATCGCCGTTGTCTGAGTCTGTGCTCTATGTTATCATGACAATCACTGTAAGTCTCCAATTCCACTGTTTATGAATTCCCAACACTAAG
i macNem1.NW_012011356v1   C 0 I 2
s cerAty1.NW_012001495v1     1747218 86 -   2157725 GGTGATCGCCGTT------GTCTGTGCTCTATGTTATCATGACAATCACTGTAAGTCTCCAATTCCACTGTTTATGAATTCCCGACACTAAG
i cerAty1.NW_012001495v1   C 0 I 2
s chlSab2.chr17             28200239 90 -  71996105 GGTGATCGCCATTGTCTGAGTCTGTGCTCTATGTCATCATGACAATCACTGT--GTTTCCAATTCCACTGTTTATGAATTCCCGACACTAAG
i chlSab2.chr17            I 10 I 6
s manLeu1.NW_012104165v1     1862233 92 +   2316924 GGTGATCGCCGTTGTCTGAGTCTGTGCTCTATGTTATCATGACAATCACTGTAAGTCTCCAATTCCACTGTTTATGAATTCCCGACACTAAG
i manLeu1.NW_012104165v1   C 0 I 2
s colAng1.NW_012115566v1     1730509 92 -   3067355 GGTGATCACTGTCGTCTGAGTCTGTGCTCTATGTCATCATGACAATCACTGTGTGTCTCCAATTCTACTGTTCATGAATTCTCGACACTAAG
i colAng1.NW_012115566v1   C 0 I 2
s calJac3.chr4             171341441 90 - 171630274 GGTGACTGCCATTATCTGAGTATGCTCTATGT--CGTAAAGACAATTATCATGTGTGTTCATTTCTACTGTTTATGATTTCCCTATATCTAA
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            164386 84 -    375362 -TTGTCCACTATTGTCTGAGTCTGTGCTTTGT---GTCAGGACAATCACTGTGTGTTCCCAGTTCCACTGTT----AATTCCCTACATGCAG
i saiBol1.JH378348         C 0 I 1
s otoGar3.GL873742           1488143 89 -   2232465 GATGACCACCATTATCTAAGCCTAAATTCAGAGTTCTCCGGACAGTTTCC---TGTTTTGAATTCAATTGTTTATAAATTCCCTACACTATG
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       88700 14330 -    285216 I
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e nomLeu3.chr1a             74046096  0 + 122973662 C
e panPan2.chr6              29260175  0 + 173848474 C
e panTro5.chr6              29016574  0 + 175400573 C

a score=-28498.000000
s hg38.chr6_GL000254v2_alt     44554 52 +   4827813 CGCCctctctctctctctctctctctctctctctctctctctctctctctct
s gorGor5.CYUI01015250v1     5055970 48 +   6154872 CGCC----ctctctctctctctctctctctctctctctctctctctctctct
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29192799  4 + 172585720 CGCA------------------------------------------------
i rheMac8.chr4             I 2 C 0
s macFas5.chr4              28881297  4 - 170955103 CGCA------------------------------------------------
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1     1855511  4 -   2996164 CGCG------------------------------------------------
i macNem1.NW_012011356v1   I 2 C 0
s cerAty1.NW_012001495v1     1747306  4 -   2157725 CGCG------------------------------------------------
i cerAty1.NW_012001495v1   I 2 C 0
s manLeu1.NW_012104165v1     1862327  4 +   2316924 CGCG------------------------------------------------
i manLeu1.NW_012104165v1   I 2 C 0
s colAng1.NW_012115566v1     1730603  4 -   3067355 CGCG------------------------------------------------
i colAng1.NW_012115566v1   I 2 C 0
s calJac3.chr4             171341532  3 - 171630274 TGC-------------------------------------------------
i calJac3.chr4             I 1 C 0
s saiBol1.JH378348            164471  3 -    375362 TGC-------------------------------------------------
i saiBol1.JH378348         I 1 C 0
s otoGar3.GL873742           1488232  2 -   2232465 CT--------------------------------------------------
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       88700 14330 -    285216 I
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e chlSab2.chr17             28200329  6 -  71996105 I
e nomLeu3.chr1a             74046096  0 + 122973662 C
e panPan2.chr6              29260175  0 + 173848474 C
e panTro5.chr6              29016574  0 + 175400573 C

a score=216112.000000
s hg38.chr6_GL000254v2_alt     44606 69 +   4827813 ctctctctcGGGCATGGCTACACCAGGAGAAAGATATCTT-GTGGTAAAAACAAAGGCATTGTTCCTGAT
s gorGor5.CYUI01015250v1     5056018 69 +   6154872 ctctctctcGGGCATGGGTACACCAGGAGAAAGATATCTT-GTGGTAAAAAGAAAGGCATTGTTCCTGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29192803 61 + 172585720 CTCTCTCACTGGCATGGCTACACCAGGAGACAAATATCTTAGTGGTAAAAAGAAAGGCAT---------T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28881301 61 - 170955103 CTCTCTCACTGGCATGGCTACACCAGGAGACAAATATCTTAGTGGTAAAAAGAAAGGCAT---------T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1855515 61 -   2996164 CTCTCTCACTGGCATGGCTACACCAGGAGACAAATATCTTAGTGGTAAAAAGAAAGGCAT---------T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1747310 61 -   2157725 CTCTCTCACGGGCATGGCTACACCAGGAGACAAATATATTAGTGGTAAAAAGAAAGGCAT---------T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28200335 61 -  71996105 CTCTCTCACGGGCATGGCTACACCAGGAGACAGATATCTTAGTGGTAAAAAGAAAGGCAT---------T
i chlSab2.chr17            I 6 C 0
s manLeu1.NW_012104165v1     1862331 61 +   2316924 CTCTCTCACGGGCATGGCTACACCAGGAGACAAATATATTAGTGGTAAAAAGAAAGGCAT---------T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1730607 61 -   3067355 CTCTCTCTCGGGCATGGCTACACCAGGAGACAGATATCTTAGTGGTAAAAAGAAAGGCAT---------T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171341535 60 - 171630274 TCCTGTCTTAGGCACAGTTACATCACAA-AAAGATACCCCAATGGTAAAAAGAAAAGCGC---------T
i calJac3.chr4             C 0 T 17752
s saiBol1.JH378348            164474 60 -    375362 -CCTCTTGTAGACACTCCGACATCAAAAGAAAAGTGGCTTCGTGGTAAAAAGAAAGGCAC---------T
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1488234 34 -   2232465 CTCTGTCTTATGCACAACTACACGAG---------------------------AAGGCAC---------T
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       88700 14330 -    285216 I
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e nomLeu3.chr1a             74046096  0 + 122973662 C
e panPan2.chr6              29260175  0 + 173848474 C
e panTro5.chr6              29016574  0 + 175400573 C

a score=8365.000000
s hg38.chr6_GL000254v2_alt     44675 2 +   4827813 GT
s gorGor5.CYUI01015250v1     5056087 2 +   6154872 GT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29192864 2 + 172585720 GT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28881362 2 - 170955103 GT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1855576 2 -   2996164 GT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1747371 2 -   2157725 GT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28200396 2 -  71996105 GT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1862392 2 +   2316924 GT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1730668 2 -   3067355 GT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            164534 2 -    375362 GA
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1488268 2 -   2232465 GT
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       88700 14330 -    285216 I
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e nomLeu3.chr1a             74046096 0 + 122973662 C
e panPan2.chr6              29260175 0 + 173848474 C
e panTro5.chr6              29016574 0 + 175400573 C

a score=659316.000000
s hg38.chr6_GL000254v2_alt     44677 138 +   4827813 TCCTGATTTGTGGTCAGTCCAAGATCAACTCACCCCAAAGTGGTCTCCCCATC-ATATTAGACTTTCTGGAGCATAATTCCATTCTATCCCTTGAGTGACCTCCGGCATACAACATTCTCTTGCAAAttttctgattat---------------
s gorGor5.CYUI01015250v1     5056089 137 +   6154872 TCCTGATTTGTGGTCAGTCCAAGATCAACTCACCCCAAAGTGGTCTCCCCATC-ATATTAGACTTTCTGGAGCATAATTCCACTCTATCCCTTGAGTGACC-CTGGCATACAACATTCTCTTGCAAATTTTCTGATTAT---------------
i gorGor5.CYUI01015250v1   C 0 I 2172
s rheMac8.chr4              29192866 138 + 172585720 TCCTGATTTGTGGTCAGTCCAAGATCAATTCACCCCAAAGTGGTCTCCCCATC-ATATTAGACTTTCTGGCGCATACTTCCATTCTATCCCTTGAGTGACTTCTGGCACACAACATTCTCTTGCAAAttttctgattat---------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28881364 138 - 170955103 TCCTGATTTGTGGTCAGTCCAAGATCAATTCACCCCAAAGTGGTCTCCCCATC-ATATTAGACTTTCTGGCGCATACTTCCATTCTATCCCTTGAGTGACTTCTGGCACACAACATTCTCTTGCAAAttttctgattat---------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1855578 138 -   2996164 TCCTGATTTGTGGTCAGTCCAAGATCAATTCACCCCAAAGTGATCTCCCCATC-ATATTAGACTTTCTGGCGCATACTTCCATTCTATCCCTTGAGTGACTTCTGGCACACAACATTCTCTTGCAAAttttctgattat---------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1747373 138 -   2157725 TCCTGATTTGTGGTCAGTCCAAGATCAACTCACCCCAAAGTGGTCTCCCCATC-ATATTAGACTTTCTGGCACATACTTCCATTCTATCCCTTGAGTGACTTCTGGCACACAACATTCTCTTGCAAAttttctgattat---------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28200398 138 -  71996105 TCCTGATTTGTGGTCAGTCCAAGATCAACTCACCCCAAAGTGGTCTCCCCATC-ATATTAGACTTTCTGGCGCATACTTCCGTTCTATCCCTTGAGTGACTCCCAGCATGCAACATTCTCTTGCAAATTTTCTGATTAT---------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1862394 138 +   2316924 TCCTGATTTGTGGTCAGTCCAAGATCAACTCACCCCAAAGTGGTCTCCCCATC-ATATTAGACTTTCTGGCACATACTTCCATTCTATCCCTTGAGTGACTTCTGGCACACAACATTCTCTTGCAAAttttctgattat---------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1730670 138 -   3067355 TCCTGATTTGTGGTCAGTCCAAGATCAACTCACCCCAAAGTGGTCTCCCCATC-ATATTAGACTTTCTGGCGCATATTTCCATTCTATCCCTTGAGTGACTCCCAGCACACAACATTCTCTTGCAAAttttctgattat---------------
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            164536 135 -    375362 TCCTGATTTGTGGTCAGCCCAAGATCAATTCACTGCAACCTCGGCTCCCCATCAATGTTAGACTTCCTG----ATACTTCCATTCTATCATTCGAGTGTGTCCCAGCAAACAACATTCTCTTGCCAATTTTCTGATTAT---------------
i saiBol1.JH378348         C 0 I 11790
s aotNan1.NW_018494050v1      103030 134 -    285216 TCCTGATTTGTGGTCAGCCCAAGATCGACTCACCCCAACCTTGGCTCCCCATC-ATGTTAGACTTCCTG----ATACTTCCATTCTATCATTTGAGTGTGTCCCGGCAAACAACATTCTCTTGCCAATTTTCTGATTAT---------------
i aotNan1.NW_018494050v1   I 14330 T 10486
s otoGar3.GL873742           1488270 140 -   2232465 TCTTGATTTGAGGTCATCTCACTATCAATCCGC-------------CTCCGTT-GTATTAGATCGCCTGGAGCATGCTTCCATTCTCTCACTTGAGTGCGTCCTGTCATACAACATTCTCTTTTAACTTTTCTTTTTGCAactttgcttagtat
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e nomLeu3.chr1a             74046096   0 + 122973662 C
e panPan2.chr6              29260175   0 + 173848474 C
e panTro5.chr6              29016574   0 + 175400573 C

a score=337042.000000
s hg38.chr6_GL000254v2_alt     44815 107 +   4827813 aactt-tt---ttcttttgactctgggaagcatcttagtgtttcccatagtcaaaaaataaaact----c--aggtatgtgtgaaaataccctaaaattcagtacaaatagaggcaa
s gorGor5.CYUI01015250v1     5058398 107 +   6154872 aaCTT-TT---TTCttttgactcttggaggcatcttagagtttcccatagtcaaaaaataaaact----c--aggtatgtgtgaaaataccctaaaattcagtacaaatagaggcaa
i gorGor5.CYUI01015250v1   I 2172 C 0
s rheMac8.chr4              29193004 108 + 172585720 aacttctt---ttcttttgactctggggagcatgttagtgtttcacatcgtcaaaaaataaaact----c--atgtgtgtgtgaaaataccctaaaattcaatacaaatagaggcaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28881502 108 - 170955103 aacttctt---ttcttttgactctggggagcatgttagtgtttcacatcgtcaaaaaataaaact----c--atgtgtgtgtgaaaataccctaaaattcaatacaaatagaggcaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1855716 108 -   2996164 aacttctt---ttcttttgactctggggagcatgttagtgtttcacatcgtcaaaaaataaaact----c--atgtgtgtgtgaaaataccctaaaattcaatacaaatagaggcaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1747511 108 -   2157725 aacttctt---ttcttttgactctggggagcatgttagtgtttcacatcgtcaaaaaataaaact----c--agatgtgtgtgaaaataccctaaaattcaatacaaatagaggcaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28200536  86 -  71996105 AACTTCTT---TTCTTTTGACTCTGGGGAGCATGTTAGTGTTTCAT----------------------------GTGTGTGTGAAAATAccctaaaattcaatacaaatagaggcaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1862532 108 +   2316924 aacttctt---ttcttttgactctggggagcatgttagtgtttcacatcgtcaaaaaataaaact----c--agatgtgtgtgaaaataccctaaaattcaatacaaatagaggcaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1730808 110 -   3067355 aacttctt---ttcttttgactctagggagcatgttagtgtttcacatcgtcaaaaaataaaact----cagatgtgtgtgtgaaaataccctaaaattcaatgcaaatagaggcaa
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1488410 106 -   2232465 aactttctgcattcttttaactcttggaaac---------ttttacatggtcaaaaaataaaactgacac--aagtttgtgtgaaaataacctatacttcaatacaaatataaacaa
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            164671 11790 -    375362 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e nomLeu3.chr1a             74046096   0 + 122973662 C
e panPan2.chr6              29260175   0 + 173848474 C
e panTro5.chr6              29016574   0 + 175400573 C

a score=318159.000000
s hg38.chr6_GL000254v2_alt     44922  79 +   4827813 attaactgcatttcaaaagaataacataaccacattgaagag-gaaagaactgatataagaaa-atggtt----------------------------------------------tacacagattg
s gorGor5.CYUI01015250v1     5058505  79 +   6154872 attaactgcatttcaaaagaataacataaccacattgaaggg-gaaataactgatataagaaa-atggtt----------------------------------------------tacacagattg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74046096  79 + 122973662 ATtaactgcatttcaaaagaataacgtaaacacactgaagag-gaaagaactgatctaagaaa-acggtt----------------------------------------------tacacagattg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29193112  80 + 172585720 attaactgcatttcaaaagaatcacataaccacattgaagtg-gaaagaactgatctaaaaaatatggtt----------------------------------------------tacgtagattg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28881610  80 - 170955103 attaactgcatttcaaaagaatcacataaccacattgaagtg-gaaagaactgatctaaaaaatatggtt----------------------------------------------tacgtagattg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1855824  80 -   2996164 attaactgcatttcaaaagaatcacataaccacattgaagtg-gaaagaactgatctaaaaaatatggtt----------------------------------------------tacgtagattg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1747619  80 -   2157725 attaactgcatttcaaaagaatcacataaccacattgaagtg-gaaagaactgatctaaaaaatatggtt----------------------------------------------tacgcagattg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28200622  80 -  71996105 attaactgcatttcaaaagaatcacataaccacattgaagcg-gaaagaactgatctaaaaaatatggtt----------------------------------------------tacacagattg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1862640  80 +   2316924 attaactgcatttcaaaagaatcacataaccacattgaagtg-gaaagaactgatctaaaaaatatggtt----------------------------------------------tacgcagattg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1730918  80 -   3067355 attaactgcatttcaaaagaatcacataaccacattgaagtg-gaaagaactgatctaaaaaatatggtt----------------------------------------------tacacagattg
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1488516 126 -   2232465 gtctactgcgtttcaaaagaatgatataatgacaataaagaacaaaagaactgatctaagaaa-atggctaatacagtactttgttcttttttttttttttctcctttttttgccctccgtagactg
i otoGar3.GL873742         C 0 I 208
e saiBol1.JH378348            164671 11790 -    375362 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e panPan2.chr6              29260175   0 + 173848474 C
e panTro5.chr6              29016574   0 + 175400573 C

a score=1566856.000000
s hg38.chr6_GL000254v2_alt     45001 359 +   4827813 ttgttctaattgtgagatcaaaaagaacatcgaacaaatcttaaactctatgtatcaggattattttttgtagagtgagggctgtagcaattctgatattttgtgtgaattttaggattgggaaatcgagtgtctg-------------------------------ttgttggaaacagactctcactgtgggagaagaaggaaggtaaagaatagtcctgttgatactg-atgggaa-ttagaggcatcagtatgaaattgtacatatgaaattgtaaaatttccccacagatctatctgctaactgggcctagaagaaatgatacctcagaagcaa----------tgagcaaagataactc-tgtatcttgattttcaaataccattccctactaaaag
s gorGor5.CYUI01015250v1     5058584 359 +   6154872 ttgttctaattgtgagatcaaaaagaacatcgaacaaatcttaaactctatgtatcaggattattttttgtagaatgagggctgtagcaattctgatattttgtgtgaattttaggattgggaaatcgagtgtctg-------------------------------ttgttggaaccagactctcactgtgggagaagaaggaaggtaaagaatagtcctgttgatactg-atgggaa-ttagaggcatcagtatgaaattgtacatatgaaattgtaaaatttccccacagatctatctgctaactgggcctagaagaaatgatacctcagaagcaa----------tgagcaaagataactc-tgtatcctgattttcaaataccattccccactaaaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74046175 357 + 122973662 ttgttctaattgtaagatcaagaagaacatcgaacaaatcttaaactctatgtatcaggattattttttgtagagtgagggctgtagcaattctgatattttgtgtgaattttaggattgggaaatcgagtgtctg-------------------------------ttgttggaaccagactctcactgtgggagaagaaggaaggtaaagaatagtcctgttgatactg-atgggaa-ctagaggcatcagtatgaaattgtacatatgaaattgtaaaatttccccacagatctatgtgctaactgggcctagaagaaatgatacctcagaagcaa----------tgagcaaagataactc---tatcttgatattcaagtacgattctctacttaaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29193192 358 + 172585720 ttgttctaattgtaatatcaaaaagaacaccaaacaaatcttaaactctatgtatcaggattattttttaaagagtgaaggctgtagcaattctgatattttatgtgaattttaggattgggaaactgagtgtctg--------------------------------tgttggaaccagactctcactgtgggagaagaaggaagataaagaatagtcctgttgatcctg-atgggaa-ttagaggcatcagtatgaaattgtacatatgaaattgtaaaatttccccacagatctatctgctaactgggcctagaagaaaggatgcctcagaagcaa----------tgagcacagataactc-tgtaccttaattttcaaaaaccattacctactaaaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28881690 358 - 170955103 ttgttctaattgtaatatcaaaaagaacaccaaacaaatcttaaactctatgtatcaggattattttttaaagagtgaaggctgtagcaattctgatattttatgtgaattttaggattgggaaactgagtgtctg--------------------------------tgttggaaccagactctcactgtgggagaagaaggaagataaagaatagtcctgttgatcctg-atgggaa-ttagaggcatcagtatgaaattgtacatatgaaattgtaaaatttccccacagatctatctgctaactgggcctagaagaaaggatgcctcagaagcaa----------tgagcacagataactc-tgtaccttaattttcaaaaaccattacctactaaaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1855904 358 -   2996164 ttgttctaattgtaatatcaaaaagaacaccaaacaaatcttaaactctatgtatcaggattattttttaaagagtgaaggctgtagcaattctgatattttatgtgaattttaggtttgggaaactgagtgtctg--------------------------------tgttggaaccagactttcactgtgggagaagaaggaagataaagaatagtcctgttgatcctg-atgggaa-ttagaggcatcagtatgaaattgtacatatgaaattgtaaaatttccccacagatctatctgctaactgggcctagaagaaaggatgcctcagaagcaa----------tgagcacagataactc-tgtaccttaattttcaaaaaccattacctactaaaag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1747699 358 -   2157725 ttgttctaattgtaatatcaaaaagaacaccaaacaaatcttaaactctatgtatcaggattgttttttaaagagtgaaggctgtagcaattctgatactttatgtgaattttaggattgggaaaccgagtgtctg--------------------------------tgttggaaccagactctcactgtgggagaagaaggaaggtaaagaattgtcctgttgatcctg-atgggaa-ttagaggcatcagtatgaaattgtacatatgaaattgtaaaatttccccacagatctatctgctaactgggcctagaagaaaggatacctcagaagcaa----------tgagcacagataactc-tgtaccttaattttcaaaaaccgttacctactaaaag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28200702 358 -  71996105 ttgttctaattgtaatatcaaaaagaacaccaaacaaatcttaaactctatgtatcaggattattttttaaagagtgaaggctgtagcaattctggtattttgtgtgaattttaggattgggaaaccgagtgtctg--------------------------------tgttggaaccagattctcactgtgggagaagaaggaaggtaaagaatagtcctgttgatcctg-gtgggaa-ttagaggcatcagtatgaaattgtacatatgaaattgtaaaatttccccactgatctatctgctaactgggcctagaagaaaggatacctcagaagcaa----------tgagcacagataactc-tgtaccttaattttcaaaacccgttacctactaaaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1862720 358 +   2316924 ttgttctaattgtaatatcaaaaagaacaccaaacaaatcttaaactctatgtatcaggattgttttttaaagagtgaaggctgtagcaattctgatactttatgtgaattttaggattgggaaaccgagtgtctg--------------------------------tgttggaatcagactctcactgtgggagaagaaggaaggtaaagaatagtcctgttgatcctg-atgggaa-ttagaggcatcagtatgaaattgtacatatgaaattgtaaaatttccccacagatctatctgctaactgggcctagaagaaaggatgcctcagaagcaa----------tgagcacagataactc-tgtaccttaattttcaaaaaccgttacctactaaaag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1730998 358 -   3067355 ttgttctaattgtaagatcaaaaagaacaccaaacaaatcttaaactctatgtatcaggattattttttaaagagtgaaggctgtagcaattctgatattttgtgtgaattttaggattgggaaaccgagtgtctg--------------------------------tgttggaacaagactctcactgtgggagaagaaggaaggtaaagaatagtcctgttgatactg-atgggaa-ttagaggcatcagtatgaaattgtacatatgaaattgtaaaatttcaccacagatctatctgctaactgggcctagaagaaaggatacctcagaagcaa----------tgagcacagataactc-tgtaccttgattttcaaaaaccgttacctactaaaag
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1488850 399 -   2232465 ttgttctaattttaaagacaaaaagaatagttaacaaatcttaaactctaggtagcaggattattttttgtaatgctaaggttgtaacaa-tctgatactttgtgtgaattttaagaatgggaaaatgtgcatttgtgtagtgtgaaaatgagtatgtgtgtatgtgttgttggaaccaggctgtcactgtggacaaagagggaaggtaaagaatagtcctgttagtgctgcacgggaatttagatgctttggtatgaaat--tatatatgtaattgt-aaattcctccccaaatctgtctggtaacaaagcctagcagaaatgatcattcaaaagcaatcagcaaaagtgagcaaaactaactcccatatcttgatttttaaatactattcctcactgaaag
i otoGar3.GL873742         I 208 T 12097
e saiBol1.JH378348            164671 11790 -    375362 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e panPan2.chr6              29260175   0 + 173848474 C
e panTro5.chr6              29016574   0 + 175400573 C

a score=1163022.000000
s hg38.chr6_GL000254v2_alt     45360 295 +   4827813 gaaccagagatactaatagaaagtagctattagtgtcaactacacagactccaggactgtgccagggaaactgcaaaatgaacctaagatatcttgccttgccagaatgtaagtgctcagaaatgacgggggtgatttaaaaggacacagaagccagcttgaagggaatctcactggccaaatctgacacacttttagcatcagtgatgacaataactgattatcattcttgggaacttaaacaaataaatatggaggacgggacgattttccttacagtggtttgccaaatgat
s gorGor5.CYUI01015250v1     5058943 295 +   6154872 gaaccagagatactaatagaaagtagctattagtgtcaactacacagactccaggactgtgccagggaaactgcaagatgaacctaagatatcttgccgtgccagaatgtaagtgctcagaaatgacgggggtgatttaaaaggacacagaagccagcttgaagggaatctcactggccaaatctgacacacttttagcatcagtgatgacaataactgattatcattcttgggaacttaaacaaataaatatggaggacgggacgattttccttacagtggtttgccaaatgat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74046532 287 + 122973662 gaaccagagatactaatagaaagtagctattagtgtcaacta--------ataggactgtgccagggaaactacaagatgaacctaagatatcttgccgtgccagaatgtaagtgctcagaaatgacgggggtgatttaaaaggacacagaagccagcttgaagggaatctcactggccaaatctggcacactttgagcatcaatgatgacaataactgattatcaatcttgggaacttaaacaaataaatatggaagacgggacgattttccttacagtggtttgccaaatgat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29193550 295 + 172585720 gaaccagagatactaacagaaaatagcaattagtgtcaactacactgactccaggactgtgccagggaaactacaagatgaacctaacatatcttgctgtgccagaatgtaggtgctcagaaatgatgggggtaatttaaaaggacacagaagccagcttgaagggaatctcactggccaaatctgacacactttgagcatcaatgatgacagtaactgattatcaatcttgggaacttaaacaaataaatatggaagatgggatgattttccttacagaggtttgccaaatgat
i rheMac8.chr4             C 0 I 3
s macFas5.chr4              28882048 293 - 170955103 gaaccagagatactaacagaaaatagcaattagtgtcaactacactgactccaggactgtgccagggaaactacaagatgaacctaacatatcttgctgtgccagaatgtaggtgctcagaaatgatgggggtaatttaaaaggacacagaagccagcttgaagggaatctcactggccaaatctgacacactttgagcatcaatgatgacagtaactgattatcaatcttgggaacttaaacaaataaatatggaagatgggatgattttccttacagaggtttgccaaatg--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1856262 295 -   2996164 gaaccagagatactaacagaaaatagcaattagtgtcaactacactgactccaggactgtgccagggaaactacaagatgaacctaacatatcttgctgtgccagaatgtaggtgctcagaaatgatgggggtaatttaaaaggacacagaagccagcttgaagggaatctcactggccaaatctgacacactttgagcatcaatgatgacagtaactgattatcaatcttgggaacttaaacaaataaatatggaagatgggatgattttccttacagaggtttgccaaatgat
i macNem1.NW_012011356v1   C 0 I 1517
s cerAty1.NW_012001495v1     1748057 295 -   2157725 gaaccagagatactaacagaaaatagcaattagtgtcaactacactgactccaggactgtgccagggaaactacaagatgaacctaacatatcttgctgtgccagaatgtaggtgctcagaaatgatgggggtaatttaaaaggacacagaagccagcttgaagggaatctcactggccaaatctgacacactttgagcatcaatgatgacagtaactgattatcaatcttgggaacttaaacaaataaatatggaagatgggatgattttccttacagaggtttgccaaatgat
i cerAty1.NW_012001495v1   C 0 I 3
s chlSab2.chr17             28201060 295 -  71996105 gaaccagagatactaacagaagatagcaattaatgtcaactacgctgactccaggactgtgccagggaaactacaagatgaacctaacatatcttgctttgccagaatgtaggtgctcagaaatgatgggggtaatttaaaaggacacagaagccagcttgaagggaatctcactggccaaatctgacacactttaagcatcaatgatgacagtaactgattatcaatcttgggaacttaaacaaataaatatggaagatgggatgattttccttacagaggtttgccaaatgat
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012104165v1     1863078 295 +   2316924 gaaccagagatactaacagaaaatagcaattagtgtcaactacactgactccaggactgtgccagagaaactacaagatgaacctaacatatcttgctgtgccagaatgtaggtgctcagaaattatgggggtaatttaaaaggacacagaagccagcttgaagggaatctcactggccaaatctgacacactttgagcatcaatgatgacagtaactgattatcaatcttgggaacttaaacaaataaatatggaagatgggatgattttccttacagaggtttgccaaatgat
i manLeu1.NW_012104165v1   C 0 I 3
s colAng1.NW_012115566v1     1731356 295 -   3067355 gaaccagagatactaacagaaaatagcaattagtgtcaactatactgactccaggactgtgccagggaaactacaagatgaacctaacatatcttgctgtgccagaatgtagatactcagaaatgatgggggtaatttaaaaggacacagaagccagcttgaagggaatatcactggccaaatctgacacactttgagcatcaatgatgacagtaactgattatcaatcttgggaacttaaacaaataaatatggaagatgggatgattttccttacagaggtttgccaaatgat
i colAng1.NW_012115566v1   C 0 I 3
e saiBol1.JH378348            164671 11790 -    375362 I
e otoGar3.GL873742           1489249 12097 -   2232465 T
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e panPan2.chr6              29260175   0 + 173848474 C
e panTro5.chr6              29016574   0 + 175400573 C

a score=3204.000000
s hg38.chr6_GL000254v2_alt     45655 7 +   4827813 aaatgtg
s gorGor5.CYUI01015250v1     5059238 7 +   6154872 aaatgtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74046819 7 + 122973662 aaatgtg
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28882341 5 - 170955103 --atgtg
i macFas5.chr4             C 0 C 0
e saiBol1.JH378348            164671 11790 -    375362 I
e otoGar3.GL873742           1489249 12097 -   2232465 T
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e colAng1.NW_012115566v1     1731651 3 -   3067355 I
e manLeu1.NW_012104165v1     1863373 3 +   2316924 I
e chlSab2.chr17             28201355 3 -  71996105 I
e cerAty1.NW_012001495v1     1748352 3 -   2157725 I
e macNem1.NW_012011356v1     1856557 1517 -   2996164 I
e rheMac8.chr4              29193845 3 + 172585720 I
e panPan2.chr6              29260175 0 + 173848474 C
e panTro5.chr6              29016574 0 + 175400573 C

a score=16718.000000
s hg38.chr6_GL000254v2_alt     45662 65 +   4827813 aaagtgagtgccgggcgcagtggctcacgcctttaatcccagcactttgggaggctgaggcgggt
s gorGor5.CYUI01015250v1     5059245 65 +   6154872 aaagtgagggcccggcgcagtggctcacacctttaatcccagcactttgggaggccgaggcgggt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74046826 65 + 122973662 aaagtgagggccgggcgcggtagctcacacctttaatcccagcactttgggaggccgaggcgggc
i nomLeu3.chr1a            C 0 C 0
e saiBol1.JH378348            164671 11790 -    375362 I
e otoGar3.GL873742           1489249 12097 -   2232465 T
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e colAng1.NW_012115566v1     1731651  3 -   3067355 I
e manLeu1.NW_012104165v1     1863373  3 +   2316924 I
e chlSab2.chr17             28201355  3 -  71996105 I
e cerAty1.NW_012001495v1     1748352  3 -   2157725 I
e macNem1.NW_012011356v1     1856557 1517 -   2996164 I
e macFas5.chr4              28882346  0 - 170955103 C
e rheMac8.chr4              29193845  3 + 172585720 I
e panPan2.chr6              29260175  0 + 173848474 C
e panTro5.chr6              29016574  0 + 175400573 C

a score=197832.000000
s hg38.chr6_GL000254v2_alt     45727 244 +   4827813 ggatcacgaggtcaggagatcgacactatcctggctaacacggtgaagccccctctccactaaaaatacaaaaccttggccgggcgtggtggcgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccaagattgcgccactgcactccagcctgggcgacagagcgaga--------ctccgtctcaaaaaaatgaacaaagaaac
s panTro5.chr6              29016574 244 + 175400573 ggatcacgaggtcaggagatagacaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggtgtggtgacgggtgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccaagattgcgccactgcactccagactgggcgacagagcgaga--------ctccgtctcaaacaaacaaacaaacaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29260175 244 + 173848474 ggatcacgaggtcaggagatagacaccatcctggctaacacggtgaaacccagtctctactaaaaatacaaaaaattagccgggtgtggtgacgggtgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccaagattgcgccactgcactccagactgggcgacagagcgaga--------ctccgtctcaaacaaacaaacaaacaaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5059310 244 +   6154872 ggatcacgaggtcaggagatcgacactatcctggctaacacggtgaagccccctctccactaaaaatacaaaaaattggccgggcgtggtggcgggtgcctgtagtcccagctactccggaggatgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccaagattgcgccactgcactccagcctgggtgacagagcgaga--------ctccgtctcaaaaaaacaaacaaacaaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74046891 238 + 122973662 agatcacgaggtcaggagatcgacatcatcctgcctgacacggtgaaaccccgtctccactaaaaatacaaaaaattagccgggcatggtagcgggtgcctgtagtcccagctactcgggaagctgaggc-------------gaacccgagaggtggagcttgcagtgagccgagattgcgccactgcac-ccagcctgggcaacagagcgaaactccgtctctccgtctcaaacaaacaaacaaacaaac
i nomLeu3.chr1a            C 0 C 0
e saiBol1.JH378348            164671 11790 -    375362 I
e otoGar3.GL873742           1489249 12097 -   2232465 T
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e colAng1.NW_012115566v1     1731651   3 -   3067355 I
e manLeu1.NW_012104165v1     1863373   3 +   2316924 I
e chlSab2.chr17             28201355   3 -  71996105 I
e cerAty1.NW_012001495v1     1748352   3 -   2157725 I
e macNem1.NW_012011356v1     1856557 1517 -   2996164 I
e macFas5.chr4              28882346   0 - 170955103 C
e rheMac8.chr4              29193845   3 + 172585720 I

a score=2913882.000000
s hg38.chr6_GL000254v2_alt     45971 641 +   4827813 aaa----gtgaggataaaatttaaaaatccccatttaaacaataccatcagaatgatgatagatgcaggcaaaatttgtaagttaatgttaaagtataggtaaaaatttgatgaggatcaggatatttacgtagtctcagagtatttccctgtagattatttattaattacaatgaggaaaatgataatttttcagggaagaaacagtaattacaaacttaaaatcaagtgatcaagctaacttcagtcagctcatgcctcttggtgtgagagagggtaataacgtgatttctgtgacatttctcccaaattccataacccgatgtaatcttatcatggctaatacagattaagaaacgttgcacaaaaccactggaaaaactcttcaaaaacatgtcggtgttgtgaaagacaagaagattaagaaactgttccaaattaaagggcactaaagagtcaagacaactagattcatatgtgattctgaaatggatcctagcttggaagagaaatttctataaaagtttttattggtacaattagacaatttttaatagactttatattagactatattcacatttatcaatgtcaaatttactgaacttgataattgtgttgtgttaaggaattgacctttttctt
s panTro5.chr6              29016818 644 + 175400573 aaacaaaGTGAGGataaaatttaaaaatccccatttaaacaataccatcagaatgatgatagatgcaggcaaaatttgtaagtcaatgttaaagtataggtaaaaatttgatgaggatcaggatatttacgtagtctcagagtatttccctgtagattatttattaattacaatgaggaaaatgatcatttttcagggaagaaacagtaattacaaacttaaaatcaagtgatcaagctaacttcagtcagctcatgcttcttggtgtgagagagggtactaatgtgatttctgtgacatttctctcaaattccataacccgatataatcttatcatggctaatacagattaagaaacgttgcacaaaaccactggaaaaactcttcaaaaacatgtcggcgttgtgaaagacaagaagattaagaaactgttccaaattaaagggcattaaagagtcaagacaactagattcatatgtgattctgatatgcatcctagcttgggagagaaatttctataaaagtttttattggtacaattagacaatttt-aatagactttatattagtctatattcacatttatcaatgttaaatttactgaacttgataattgtgctgtgttaaggaattgaccttattctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29260419 640 + 173848474 aaa----GTGAGGataaaatttaaaaatccccatttaaacaataccatcagaatgatgatagatgcaggcaaaatttgtaagtcaatgttaaagtataggtaaaaatttgatgaggatcaggatatttacgtagtctcagagtatttccctgtagattatttattaattacaatgaggaaaatgatcatttttcagggaagaaacagtaattacaaacttaaaatcaagtgatcaagctaacttcagtcagctcatgcttcttggtgtgagagagggtactaacgtgatttctgtgacatttctctcaaattccataacccgatataatcttatcatggctaatacagattaagaaacgttgcacaaaaccactggaaaaactcttcaaaaacatgtcggcgttgtgaaagacaagaagattaagaaactgttccaaattaaagggcattaaagagtcaagacaactagattcatatgtgattctgatatggatcctagcttgggagagaaatttctataaaagtttttattggtacaattagacaatttt-aatagactttatattagtctatattcacatttatcaatgttaaatttactgaacttgataattgtgctgtgttaaggaattgaccttattctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5059554 645 +   6154872 aaacaaagtgaggataaaatttaaaaatccccatttaaacaataccatcagaatgatgatagatgcaggcaaaatttgtaagtcaatgttaaagtataggtaaaaatttgatgaggatcaggatatttacgtagtctcagagtatttccctgtagattatttattaattacaatgaggaaaatgataatttttcagggaagaaacagtaattacaaacttaaaatcaagtgatcaagctaacttcagtcagctcatgcttcttggtgtgagagagggtaataacgtgatttctgtgacatttctcccaaattccataacccgatgtaatcttatcatggctaacacagattaagaaacgttgcacaaaaccactggaaaaactcttcaaaaacatgtcggtgttgtgaaagacaagaagattaagaaactgttccaaattaaagggcaataaagagtcaagacaactagattcatatgtgattctgaaatggatcctagcttgggagagaaatttctataaaagtttttattggtacaattacacaatttttaatagactttatattagactatattcacatttatcaatgttaaatttactgaacttgataattgtgctgtgttaaggaattgaccttgttctt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74047129 641 + 122973662 aac----gtgaggataaaatttaaaaatccccatttaaacaacaccatcagaatgatgatagatgcaggcaaaatttgtaagtcaatgttaaagtataggtaaaattttaatgaggatcaggatatttgcgtagtctcagagtatttccctgtagattacttattaattacaatgaggaaaatgatattttttcagggaagaagcagtaattacaaacttaaaatcaagtgatcaagctaacttcagtcagctcatgactcttggtgtgagagagggtaacaacgtgatttctgtgacatttctcccaatttccacaacccgatgtaatcttatcatggctaatacagattaagaaacgttgcacaaaaccactggaaaaactcttcaaaaacatgtcggtgttgtgaaagacaagaagattaagaaactgttccaaattaaagggcactaaagactcaagacaactagattcatatgtgattctgaaatggatcctagcttgggagagaaatttctataaaagtttttattggtacaaatagacaatttttaatagactttatgttagactatattcacatttatcaaggttaaatttactgaacttgacaattgtgctgtattaaggaattgaccttgttctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29193848 626 + 172585720 aaa----gtgagaacaaaatttaaaaatgcccatttaaacaacaccatcagaatgatgatagatgcaggcaaaatttgtgagtcaatgttaaagaataggtaaaattttgatgaggatcaggatatttatgtagtctcagagtatttccc----------tta-taattacaat--ggaaaatgataatttttcagggaagaaacagtaattacaaacttaaaatcaagtgatcaaggtaacttcagtcagctcatgcctcttggtgtgagagaggataataatgtgatttctgtgacatttcgcccagtttccataacctgatgtaatcttatcatgactagtacaggttaagaaaagttgaacaaaa--actggaaaaactcttcgaaaacatgtcggtgttgtgaaagacaagaagattaagaaactgttccaaattaaagggcactaaagagtcaagacaactagaatcacatgtgattcagaaatagatcctagcttgggagagaaatttctatgaaagtttttattggtacaattaaacaatttttaatagactttatattagattatattaacatttataaatgttaaatttactgaacttgataattgtgctgtgttaaagaattgactttgttctt
i rheMac8.chr4             I 3 C 0
s macFas5.chr4              28882346 626 - 170955103 aaa----gtgagaacaaaatttaaaaatgcccatttaaacaacaccatcagaatgatgatagatgcaggcaaaatttgtgagtcagtgttaaagaataggtaaaattttgatgaggatcaggatatttatgtagtctcagagtatttccc----------tta-taattacaat--ggaaaatgataatttttcagggaagaaacagtaattacaaacttaaaatcaagtgatcaaggtaacttcagtcagctcatgcctcttggtgtgagagaggataataatgtgatttctgtgacatttcgcccagtttccataacctgatgtaatcttatcatgactagtacaggttaagaaaagttgaacaaaa--actggaaaaactcttcgaaaacatgtcggtgttgtgaaagacaagaagattaagaaactgttccaaattaaagggcactaaagagtcaagacaactagaatcacatgtgattcagaaatagatcctagcttgggagagaaatttctatgaaagtttttattggtacaattaaacaatttttaatagactttatattagattatattaacatttataaatgttaaatttactgaacttgataattgtgctgtgttaaagaattgactttgttctt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1748355 628 -   2157725 aaa----gtgagaacaaaatttaaaaatccccatttaaacaacaccatcagaatgatgatagatgcaggcaaaatttgtgagtcaatgttaaagaataggtaaaattttgatgaggatcaggatatttatgtagtctcagagtatttccc----------tta-taattacaat--ggaaaatgataatttttcagggaagaaacagtaattacaaacttaaaatcaagtgatcaaggtaacttcagtcagctcatgcctcttggtgtgagagaggataataatgtgatttctgtgacattttgcccagtttccataacctgatgtaatcttatcatgactagtacaggttaagaaacgttgaacaaaaccactggaaaaactcttcgaaaacatgtcggtgttgtgaaagacaagaagattaagaaactgttccaaattaaagggcactaaagagtcaagacaactagaatcacatgtgattcagaaatagatcctagcttgggagagaaatttctatgaaagtttttattggtacaattagacaatttttaatagactttatattagattatattaacatttataaatgttaaatttactgaacttgataattctgctgtgttaaggaattgactttgttctt
i cerAty1.NW_012001495v1   I 3 C 0
s chlSab2.chr17             28201358 628 -  71996105 aaa----gtgagaacaaaatttaaaaatccccatttaaacaacaccatcagaatgatgatagatgcaggcaaaatttgtgagtcaatgttaaagaacaggtaaaattttgatgaggatcaggatatttatgtagtctcagagtatttccc----------tta-taattacaat--ggaaaatgataatttttcagggaagaaacaataattacaaacttaaaatcaagtgagcaagctaacttcagtcagctcatgcctcttggggtgggagaggataataatgtgatttctgtgacatttctcccaatttccataacctgatgtaatcttatcatgactagtacaggttaagaaacgttgaacaaaaccactggaaaaactcttcaaaaacatgtcagtgttgtgaaagacaagaagattaagaaactgttccaaattaaagggcactaaagagtcaagacaattagattcacatgtgattcagaaatagatcctagcttgggagagaaatttctatgaaagtttttattggtgcaattagacaatttttaatagactttatattagactatattaacatttataaatgttaaatttactgaacttgataattgtgctgtgttaaggaattgaccttgttctt
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012104165v1     1863376 628 +   2316924 aaa----gtgagaacaaaatttaaaaatccccatttaaacaacaccatcagaatgatgatagatgcaggcaaaatttgtgagtcaatgttaaagaataggtaaaattttgatgaggatcaggatatttatgtagtctcagagtatttccc----------tta-taattacaat--ggaaaatgataatttttcagggaagaaacagtaattacaaacttaaaatcaagtgatcaaggtaacttcagtcagctcatgcctcttggtgtgagagaggataataatgtgatttctgtgacatttcgcccagtttccataacctgatgtaatcttatcatgactagcacaggttaagaaacgttgaacaaaaccactggaaaaactcttcgaaaacatgtcggtgttgtgaaagacaagaagattaagaaactgttccaaattaaagggcactaaagagtcaagacaactagaatcacatgtgattcagaaatagatcctagcttgggagagaaatttctatgaaagtttttattggtacaattagacaatttttaatagactttatattagattatattaacatttatacatgttaaatttactgaacttgataattgtgctgtgttaaggaattgactttgttctt
i manLeu1.NW_012104165v1   I 3 C 0
s colAng1.NW_012115566v1     1731654 623 -   3067355 aaa----gtgagaacaaaatttaaaaatccccatttaaacaacacaatcagaatgatgatagatgcaggcaaaatttgtgagtcaatgttaaagaataggtaaaattttgatgaggatcaggatatttatgtagtctcagagtatttccc----------ttattaattacaat--ggaaaatgataagttttcagggaagaaacagtaattacaaacttaaaatcaaatgatcaagctaacgtcagtcagctcatgcctcttggtgtgagagaggatgataatgtgatttctgtgaca-ttctcccaatttccatagcctgatgtaatcttatcatgactagtacaggttaagaaacgttgaacaaaaccactggaaaaactcttcaaaaacatgttggtgttgtgaaaaacaagaagattaagaaactgttccaaattaaagggcactaaagagtcaagacaactagattcatatgtgattcagaaatagatcttagcttgggagagaaatttctatgaaagtttttattggtacaattagacaatttttaatagact-----ttagagtatattaacttttataaatgttaaatttactgaacttgataattgtgctgtgttaaggaattgactttgttctt
i colAng1.NW_012115566v1   I 3 C 0
e saiBol1.JH378348            164671 11790 -    375362 I
e otoGar3.GL873742           1489249 12097 -   2232465 T
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e macNem1.NW_012011356v1     1856557 1517 -   2996164 I

a score=692164.000000
s hg38.chr6_GL000254v2_alt     46612 146 +   4827813 aagaaatacacattgaagtatttaagaataaaaagatatgatgtctgaaaatcattatcaaatagtttagagaaataaTCTTTGTCTG------atatatatatataatacatactacatatatatgatatgtatTCCAGTATTGTTGA----TTT
s panTro5.chr6              29017462 146 + 175400573 aagaaatatacattgaagtatttaagaataaaaagatatgatgtctgaaaatcattatcaaatagtttagagaaataaTCTTTGTCTG------atatatatatataatacataatacataaatatgatatgtaTTCCAGTATTGTTGA----TTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29261059 146 + 173848474 aagaaatacacattgaagtatttaagaataaaaagatatgatgtctgaaaatcattatcaaatagtttagagaaataaTCTTTGTCTG------atatatatatataatacataatacatatatatgatatgtatTCCAGTATTGTTGA----TTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5060199 146 +   6154872 aagaaatacacattgaagtatttaagaataaaaagatatgatgtctgaaaatcattatcaaatagtttagagaaataaTCTTTGTCTG------atatatatatataatacataatacatatatatgatatgtatTCCAGTATTGTTGA----TTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74047770 152 + 122973662 aagaaatacacattgaagtatttaagaataaaaagatataatgtctgaaaatcattatcaaatagtttagagaaataatctttgtctgatatatatatatatataTAATACATAATACATATATATGATATGGATTCCAGTGTTGTTGA----TTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29194474 152 + 172585720 aagaaatatacattgaagtatttaagaataaaaatacataatgtctgaaaatcattatcaaataatttagagaaataatctgtgtctgatatatatatgtatacaCACTATACAATACATACATATGATATGTATTCCAGCGTTGTTGA----TTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28882972 152 - 170955103 aagaaatatacattgaagtatttaagaataaaaatacataatgtctgaaaatcattatcaaataatttagagaaataatctgtgtctgatatatatatgtatacaCACTATACAATACATACATATGATATGTATTCCAGCGTTGTTGA----TTG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1748983 152 -   2157725 aagaaatatacattgaagtatttaagaataaaaatacataatgtctgaaaatcattatcaaataatttagagaaataatctgtatctgatatatatatgtatacaCACTATACAATACATACATATGATATGTATTCCAGCGTTGTTGA----TTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28201986 147 -  71996105 aagaaatacacattgaattatttaagaataaaaatac---atgtctgaaaatcattatcaaataatttagagaaataatctgtgtctg--atatatatgtatatacaCTATACAATACATACATATGATATGTATTCCAGCGTTGTTGA----TTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1864004 152 +   2316924 aagaaatatacattgaagtatttaagaataaaaatacataatgtctgaaaatcattatcaaataatttagagaaataatctgtatctgatatatatatgtatacaCACTATACAATACATACATATGATATGTATTCCAGCGTTGTTGA----TTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1732277 152 -   3067355 aagaaatacacattgaagtatttaagaataaaaatacataatgtctgaaaatcattatcaaataacttagagaaataatctgtgtctgatatatatatgtatataCATTATACGATACATACATATGATATGTATTCCAGCTTTGTTGA----TTG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            176461 123 -    375362 aagaaATAAACATTGAAGTATTTAGGAAAAAAAAGATTTAATTTCTT------------------TTTAGAGAAATAATTTTTGTC--------ATATATATTTATAT------ATCCACACACATG-TATATATTTCACTGCTATTGATTGTTTG
i saiBol1.JH378348         I 11790 C 0
e otoGar3.GL873742           1489249 12097 -   2232465 T
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e macNem1.NW_012011356v1     1856557 1517 -   2996164 I

a score=770748.000000
s hg38.chr6_GL000254v2_alt     46758 154 +   4827813 GTCATTGAGGAAAAGA--------TG-------------TTTTGAAATTATCC-CAAGATTTGAACAATATATGCTTCTCAGATGG-TCCCACTTTATTTTAAATGTTGCAAGGCAGAGACAAAGGTACAAATTTCTCAATTTGTATTAGAATTTAGAAGGT--GTTTTATTCTATTTT
s panTro5.chr6              29017608 154 + 175400573 GTCATTGAGGAAAAGA--------TG-------------TTTTGAAATTATCC-CAAGATTTGAACAATATATGCTTCTCAGATGG-TCCCATTTCATTTTAAATGTTGCAAGGCAGAGACAAAGATACAAATTTCTCAATTTGTATTAGAATTTAGAAGGT--GTTTTATTCTATTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29261205 154 + 173848474 GTCATTGAGGAAAAGA--------TG-------------TTTTGAAATTATCC-CAAGATTTGAACAATATATGCTTCTCAGATGG-TCCCATTTCATTTTAAATGTTGCAAGGCAGAGACAAAGATACAAATTTCTCAATTTGTATTAGAATTTAGAAGGT--GTTTTATTCTATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5060345 154 +   6154872 GTCATTGAGGAAAAGA--------TG-------------TTTTGAAATTATCC-CAAGATTTGAACAATATATGCTTCTCAGATGG-TCCCATTTCATTTTAAATGTTGCAAGGCAGAGACAAAGATACAATTTTCTCAATTTGTATTAGAATTTAGAAGGT--GTTTTATTCTATTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74047922 154 + 122973662 GTCATTGAGGAAAAGA--------TG-------------TTTTGAAATTATCC-CAAGATTTGAACAATATATGCTTCTCAGATGG-TCCCATTTCATTTTAAATGTTGCTAGGCAGAGACAAAGATACAAATTTCTCAATTTGTATTAGAATTTAGAAGGT--GTTTTATTCTATTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29194626 150 + 172585720 GGTATTGAGGAAAA--------------------------TCTGAAATTATTC-CAAGATTTGAACAATATACACTTCTCAGATGGTTCCCATTTCATTTTAAATGTTGCTAGGCAGAGACAAAGATACAAATTTCTCAATTTGTATTAGAACGTAGAAAGT--GTTTTATTCTATTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28883124 150 - 170955103 GGTATTGAGGAAAA--------------------------TCTGAAATTATTC-CAAGATTTGAACAATATACACTTCTCAGATGGTTCCCATTTCATTTTAAATGTTGCTAGGCAGAGACAAAGATACAAATTTCTCAATTTGTATTAGAACGTAGAAAGT--GTTTTATTCTATTTT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1749135 150 -   2157725 GGTATTGAGGAAAA--------------------------TCTGAAATTATTC-CAAGATTTGAACAATATACACTTCTCAGATGGTTCCCATTTCATTTTAAATGTTGCTAGGCAGAGACAAAGATACAAATTTCTCAATTTGTATTAGAACGTAGAAGGT--GTTTTATTCTATTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28202133 150 -  71996105 GTTATTGAGGAAAA--------------------------TCTGAAATTATTC-CAAGATTTGAACAATATACACTTCTCAGATGGTTTCCATTTCATTTTAAATGTTGCCAGGCAGACACAAAGATACAAATTTCTCTATTTGTATTAGAACTTAGAAGAT--GTTTTATTCTATTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1864156 150 +   2316924 GGTATTGAGGAAAA--------------------------TCTGAAATTATTC-CAAGATTTGAACAATATACACTTCTCAGATGGTTCCCATTTCATTTTAAATGTTGCTAGGCAGAGACAAAGATACAAATTTCTCAATTTGTATTAGAACGTAGAAGGT--GTTTTATTCTATTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1732429 150 -   3067355 GTTATTGAGGAAAA--------------------------TCTGAAATTATTC-CAAGATTTGAACAATATACGCTTCTCAGATGGTTCCCATTTCATTTTAAATGTTGCTAGGCAGAGACAAAGATACAAATTTCTCAATTTGTATTAGAACGTAGAAGGT--GTTTTATTCTATTTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            176584 170 -    375362 GTTGTTGAGGTGAGGA--------AGAGGCAAGATGGCATTCTAAAATGATGT-GGAGACTTGGACAATATGTGCTTCTCAAGCTGTTCTCATTCCACTTTCCATGTTGCTGGGCCATGACAAAGATACAAATTCCCCAATTTATATTGGAATTTAGCAGGTGGgttttgttttgtttt
i saiBol1.JH378348         C 0 T 22808
s otoGar3.GL873742            776863 162 +   2232465 GTTGGTAAGGAAAAGGTAGTACCTTG--------------TCCTCAGTCATTCTCAGGACTTGTACTATGGATGTGTCTCTAGTTGGATTTATCTTATTAAAACTCTTGAAAAGCAGAAACAAAAATATAAATTTCCCAACTCATACCACAGT-TAACAGAA--GTTTTGCATCATTTT
i otoGar3.GL873742         n 12097 C 0
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e macNem1.NW_012011356v1     1856557 1517 -   2996164 I

a score=280214.000000
s hg38.chr6_GL000254v2_alt     46912 49 +   4827813 CCTTGTCACACTCCTTGCTTGTGAGTCAATCAACTAAGGACATCTGAAA
s panTro5.chr6              29017762 49 + 175400573 CCTTGTCACACTCCTTGCTTGTGAGTCAATCAACTAAGGACATCTGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29261359 49 + 173848474 CCTTGTCACACTGCTTGCTTGTGAGTCAATCAACTAAGGACATCTGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5060499 49 +   6154872 CCTTGTCACACTCCTTGCTTGTGAGTCAATCAACTAAGGACATCTGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74048076 49 + 122973662 CCTTGTCACACTCCTTGCTTGTGAGTCAATCAACTAAGGACATCTGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29194776 49 + 172585720 CCTTGTCACACTCCTTGCTTGTGAGTCAATCAACTAAAGACATCTGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28883274 49 - 170955103 CCTTGTCACACTCCTTGCTTGTGAGTCAATCAACTAAAGACATCTGAAA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1749285 49 -   2157725 CCTTGTCACACTCCTTGCTTGTGAGTCAATCAACTAAAGACATCTGAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28202283 49 -  71996105 CCTTGTCACACTCCTTGCTTGTGAGTCAATCAACTAAAGACATCTGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1864306 49 +   2316924 CCTTGTCACACTCCTTGCTTGTGAGTCAATCAACTAAAGACATCTGAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1732579 48 -   3067355 CCTTGTCACACTCCTTGCTTGTGAGTCAATCAACTAAAGACATCTGAA-
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742            777025 48 +   2232465 -TCTTTTATACTCCTTGCTTGTGAGTTAATCAGCTAAAGACATCTGGAA
i otoGar3.GL873742         C 0 I 3519
e saiBol1.JH378348            176754 22808 -    375362 T
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e macNem1.NW_012011356v1     1856557 1517 -   2996164 I

a score=513987.000000
s hg38.chr6_GL000254v2_alt     46961 134 +   4827813 GAGACAGAGTTTCTTTCTCAGAGTCAGGAGGTAATGAGGGGCTGCTCTGGTAGGGAAAGAAATAGTGAAGTT---CTTTTTTGGagaaaagcagcaaaaaaaaaagagagtgac----aggagaaaaagaaagaaagaatg
s panTro5.chr6              29017811 135 + 175400573 GAGACAGAATTTCTTTCTCAGAGTCAGGAGGTAATGAGGGGCTGCTCTGGTAGGGAAAGAAATAGTGAAGTTGTTCTTTTTTGGagaaaagcagcaaaaaaaa--gagagtgac----aggagaaaaagaaagaaagaatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29261408 135 + 173848474 GAGACAGAATTTCTTTCTCAGAGTCAGGAGGTAATGAGGGGCTGCTCTGGTAGGGAAAGAAATAGTGAAGTTGTTCTTTTTTGGAGAAAAGCAGCAAAAAAAA--GAGAGTGAC----AGGAGAAAAAGAAAGAAAGAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5060548 132 +   6154872 GAGACAGAATTTCTTTCTCGGAGTCAGGAGGTAATGAGGGGCTGCTCTGGTAGGTAAAGAAATAGTGAAGTTGTTCTTTTTTGGAGAaaagcagcaaaaaaaa-agagagtgac----aggagaa----aaagaaagaatg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74048125 138 + 122973662 GAGACAGAATTTCTTTCTCAGAGTCAGGAAGTAATGAGGGGCTCTTCTGGTAGGGAAAGAAATAGTGAAGTTGTTCTTTTTTGGagaaaaccagcaaaaaaaa---agagtgacagagaggagaaaaagaaagaaagaatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29194825 124 + 172585720 GAG--AGAATTTCTTTCTCAGAGTCAGGAAGTGATGAGGGGCTGCTGCGGTAGGGAAAGAAATGGTGAAGTTGTTCTTTTTTGgagaaaagaagcaaaa---a--gagag--------aggagaaaa--agagaaagaata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28883323 124 - 170955103 GAG--AGAATTTCTTTCTCAGAGTCAGGAAGTGATGAGGGGCTGCTGCGGTAGGGAAAGAAATGGTGAAGTTGTTCTTTTTTGgagaaaagaagcaaaa---a--gagag--------aggagaaaa--agagaaagaata
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1749334 124 -   2157725 GAG--AGAATTTCTTTCTCAGAGTCAGGAGGTGATGAGGGGCTGCTGCGGTAGGGAAAGAAATGGTGAAGTTGTTCTTTTTTGgagaaaagacgcaata---a--gagag--------aggagaaaa--agagaaagaata
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28202332 126 -  71996105 GAG--AGAATTTCTTTCTCAGAGTCAGGAGGTGATGAGGGGCTGCTGCGGTAGGGAAAGAAATGGTGAAGTTGTTCTTGTTTGgagaaaagaagcaaaa-aga--gagag--------aggagaaaa--agagaaagaata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1864355 124 +   2316924 GAG--AGAATTTCTTTCTCAGAGTCAGGAGGTGATGAGGGGCTGCTGCGGTAGGGAAAGAAATGGTGAAGTTGTTCTTTTTTGgagaaaagaagcaaaa---a--gagag--------aggagaaaa--agagaaagaata
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1732627 123 -   3067355 -----AGAATTTCTTTCTCAGAGTCAGGAGGTGATGAGGGGCTGCTGCGGTAGGGAAAGAAATGGTGAAGTTGTTCTTTTTTGGAGAAAAGAAGCAAAA-AGA--GAGAG--------AGGAGAAAA--AGAGAAAGAATG
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e macNem1.NW_012011356v1     1856557 1517 -   2996164 I

a score=438107.000000
s hg38.chr6_GL000254v2_alt     47095 77 +   4827813 gaaggaagggaaggaggaaaagaaaCAGTAAAGTTGA-CAAACAGAACTCCCTTCCCTCTTTATTAGTCTTCAGGAAA
s panTro5.chr6              29017946 77 + 175400573 gaaggaagggaaggaggaaaggaaacagtaaagTTGA-CAAACAGAACTCCTTTCCCTCTTTATTAGTCTTCAGGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29261543 77 + 173848474 GAAAGAAGGGAAGGAGGAAAAGAAACAGTAAAGTTGA-CAAACAGAACTCCTTTCCCTCTTTATTAGTCTTCAGGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5060680 77 +   6154872 gaaggaagggaaggaggaaaagaaaCAGTAAAGTTGA-CAAACAGAACTCCCTTCCCTCTTTATTAGTCTTCAGGAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74048263 76 + 122973662 aaaggaagggaagcaggaaaATAAACAGCAACGTTGA-CAAACAGAACTCC-TTCCCTCTTTATTAGTCTTCAGGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29194949 77 + 172585720 gaaggaagggaaggaggaaaagaaacagtgaagTTGA-CAAACAGAACTCCCTTCCCTCTTTATTAGTCTTCAGGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28883447 77 - 170955103 gaaggaagggaaggaggaaaagaaacagtgaagTTGA-CAAACAGAACTCCCTTCCCTCTTTATTAGTCTTCAGGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1858074 78 -   2996164 gaaggaagggaaggaggaaagaaACCAGTGAAGTTGACCAAACAGAACTCCCTTCCCTCTTTATTAGTCTTCAGGAAA
i macNem1.NW_012011356v1   I 1517 I 207
s cerAty1.NW_012001495v1     1749458 77 -   2157725 gaaggaagggaaggaggaaaagaaacagtgaagTTGA-CAAACAAAACTCCCTTCTCTCTTTATTAGTCTTCAGGAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28202458 77 -  71996105 gaaggaaggaaaggaggaaaagaaacagtgaagTTGA-CAAACAGAACTCCCTTCCCTCTCTATTAGTCTTCAGGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1864479 77 +   2316924 gaaggaagggaaggaggaaaagaaacagtgaagTTGA-CAAACAGAACTCCCTTCCCTCTTTATTAGTCTTCAGGAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1732750 77 -   3067355 GAAGGAAGGGAAGGAGGAAAAGAAACAGTGAAGTTAA-CAAACAGAACTCCCTTCCCTCTTTATTAGTCTTCAGGAAA
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T

a score=369880.000000
s hg38.chr6_GL000254v2_alt     47172 85 +   4827813 TATAGAGTTtgaaactatcatagcccaggaaaccctttaaatagggccatcagtaggccagaaatttt-gattagtgccttgaaaa
s panTro5.chr6              29018023 85 + 175400573 TATAGGGTTtgaaactatcatagccctggaaaccctttaaatagggccatcagtaggccagaaatttt-gattagagccttgaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29261620 86 + 173848474 TATAGGGTTtgaaactatcatagccctggaaaccctttaaatagggccatcagtaggccagaaattttcgattagtgccttgaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5060757 85 +   6154872 TATAGGGTTtgaaactatcatagccctgcaaaccctttaaatagggccatcagtaggccagaaatttt-gattagtgccttgaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74048339 85 + 122973662 TATAGGGTTtgaaactatcacagccctggaaaccctttaaatagggccgtcagtaggccagaaatttt-gattagtgccttgaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29195026 85 + 172585720 GGTAGGGTTGgaaactataacatccctggaaaccgtttaaatagagccatcagtaggccagaaatttt-gattaatgccttgaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28883524 85 - 170955103 GGTAGGGTTGgaaactataacatccctggaaaccgtttaaatagagccatcagtaggccagaaatttt-gattaatgccttgaaaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1749535 85 -   2157725 GGTAGGATTGgaaactataacatccctggaaaccgtttaaatagagccatcagtaagccagaaatttt-gattaatgccttgaaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28202535 85 -  71996105 GGTAGGGTTGgaaactataacatccctggaaaccgtttaaatagggccatcagtagtccagaaatttt-gattaatgccttgaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1864556 85 +   2316924 GGTAGGATTGgaaactataacatccctggaaactgtttaaatagagccatcagtaagccagaaatttt-gattaatgccttgaaaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1732827 85 -   3067355 GGTAGAGTTGgaaactataacatccctggaaaccatttaaatagggccatcagtagggcagaaatttt-gattaatgccttgaaaa
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e macNem1.NW_012011356v1     1858152 207 -   2996164 I

a score=278566.000000
s hg38.chr6_GL000254v2_alt     47257 319 +   4827813 taaaagcatagccgggcgcggtggctcacgcctgtagtcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctgctagaaatgcaaaaaattagcctggcgtggtggcgggcgcctgtggtccc---agctg-ctcgaggaggctgaggca-gagaatggcgtgaacccgagaggcggagcttgcagtgagctgagatcgcgccactgcactccagcctgggagagagagcgagactacgtcttaaaaaaaaaaaaagaaa--------------aaagaaagaaag
s panTro5.chr6              29018108 327 + 175400573 taaaagcatagccgggcgcggtggctcacgcctgtagtcccagcactttgggaggctgaggcagaaggatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctgctagaaatgcaaaaaattagcctggcgtggtggcgggcgcctgtggtccc---agctg-ctcgaggaggctgaggca-gagaatggcgtgaacccgagaggcggagcttgcagtgagctgagatctcgccactgcactccagcctgggagacagagcgagactccgtcttaaaaaaaaaaaaagaaa------gaaaaaagaaagaaagaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29261706 331 + 173848474 taaaagcatagccgggcgcggtggctcacgcctgtagtcccagcactttgggaggctgaggcggaaggatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctactagaaatgcaaaaaattagcctggcgtggtggcgggcgcctgtggtacccagaactgactcgaggaggctgaggca-gagaatggcgtgaacccgagaggcggagcttgcagtgagctgagatctcgccactgcactccagcctgggagacagagcgagactccgtcttaaaaaaaaaaaaaagaa------agaaaaagaaagaaagaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5060842 333 +   6154872 taaaagcaTAgccgggcgcggtggctcatgcctgtagtcccagcactttgggaggccgaggtgggcggatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctgctagaaatgcaaaaaattagcctggtgtggtggcgggcgcctgtggtccc---agctg-ctcgaggaggctgaggca-gagaatggcgtgaacccgagaggcggagcttgcagtgagctgagattgcgccactgcactccagcctgggagacagagcgagactccgtcttaaaaaaaaaaaaaaaaaagaaaagaaaaaaGAAAGAAAGAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74048424 325 + 122973662 taaaagcatagccgggcgcggtggctcacgcctgtagtcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagatcgagaccatcctggctaacaaagtgaaaccccatctccgctagaaatacaaaaaattagccgggcgtggtggcgggcgcctgtggtccc---agctg-ctcggggaggctgaggcaggagaatggcgtgaacccaggaggcagagcttgcagtgagccgagatcgcgccactgcactccagcctgggagacagagcgagactccattttaaaaaaaaaaaaaaaaa---------gacagaaagaaagaaaa
i nomLeu3.chr1a            C 0 C 0
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e colAng1.NW_012115566v1     1732912   0 -   3067355 C
e manLeu1.NW_012104165v1     1864641   0 +   2316924 C
e chlSab2.chr17             28202620   0 -  71996105 C
e cerAty1.NW_012001495v1     1749620   0 -   2157725 C
e macNem1.NW_012011356v1     1858152 207 -   2996164 I
e macFas5.chr4              28883609   0 - 170955103 C
e rheMac8.chr4              29195111   0 + 172585720 C

a score=463969.000000
s hg38.chr6_GL000254v2_alt     47576 104 +   4827813 taaaagcagaagtgattagacggacaggaaacagcagaggaaatggctgcTGTTTCACTACAGTTAAAATGTCTTACACATCTGTGAACTATTTG-TCCTCTTCT
s panTro5.chr6              29018435 104 + 175400573 taaaagcagaagtgattagacggacaggaaacagcagaggaaatggctgcTGTTTCACTACAGTTAAAATGTCTTAGACATCTGTGAACTATTTG-TCCTCTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29262037 104 + 173848474 taaaagcagaagtgattagacagacaggaaacagcagaggaaatggctgcTGTTTCACTACAGTTAAAATGTCTTAGACATCTGTGAACTATTTG-TCCTCTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5061175 104 +   6154872 TAAAAGCAGAAGTGATTAGACGCACAGGAAACAGCAGAGGAAATGGCTGCTGTTTCACTACAGTTAAAATGTCTTAGACATCTGTGAACTATTTG-TCCTCTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74048749 105 + 122973662 taaaggcagatgtaattagacggacaggaaacagcagaggaaatggctgcTGTTTCACTACAGTTAAAATGTCTTAGACATTTGTGAACTATTTGTTCCTCTTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29195111 104 + 172585720 taaaaccagaagtgattagatggacaggaaacagcagagaaaatggctgctcCTTCACTACAGTTGAAATGTCTTAGACATCTGGGAACTATTTG-TCTTCTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28883609 104 - 170955103 taaaaccagaggtgattagatggacaggaaacagcagagaaaatggctgctcCTTCACTGCAGTTGAAATGTCTTAGACATCTGGGAACTATTTG-TCTTCTTCT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1749620 104 -   2157725 taaaaccagaagtgattagatggacaggaaaccgcagagaaaatggctgctcCTTCACTACAGTTGAAATGTCTTAGACATCTGGGAACTATTTG-TCTTCTTCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28202620 104 -  71996105 taaaaccagaagtgattagatggacaggaaacagcagagaaaatggcggctcTTTCACTACAGGTGAAATGCCTTAGACATCTGGGAACTATTTG-TCTTATTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1864641 104 +   2316924 taaaaccagaagtgattagatggacaggaaacagcagagaaaatggctgctcCTTCACTACAGTTGAAATGTCTTAGACATCTGGGAACTATTTG-TCTTCTTCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1732912 101 -   3067355 taaaaccagaagtgattagatggacaggaaacagcagagaaaatggcTACTCTTTCACTACAGTTAAAATGTCTTAGACATCTGTGAACTATTTG-TCTTCC---
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e macNem1.NW_012011356v1     1858152 207 -   2996164 I

a score=608650.000000
s hg38.chr6_GL000254v2_alt     47680 113 +   4827813 CAGAGGAGGGA--CAC-TTTTTTAGGTACT--AAAAAAGAATTGTCTGGCACTTCAT-GGCAGCAACATGTTTGATGTTAACTGACAT--TTCCAGACATCCAG-GTATGATTTTTATTTAG
s panTro5.chr6              29018539 113 + 175400573 CAGAGGAGGGA--CAC-TTTTTTAGGTACT--AAAAAAGAATTGTCTGGCACTTCAT-GGCAGCAACATGTTTGATGTTAACTGACAT--TTCCAGACATCCAG-GTATGATTTTTATTTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29262141 113 + 173848474 CAGAGGAGGGA--CAC-TTTTTTAGGTACT--AAAAAAGAATTGTCTGGCACTTCAT-GGCAGCAACATGTTTGATGTTAACTGACAT--TTCCAGACATCCAG-GTATGATTTTTATTTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5061279 114 +   6154872 CAGAGGAGGGA--CACTTTTTTTAGGTACT--AAAAAAGAATTGTCTGGCACTTCAT-GGCAGCAACATGTTTCATGTTAACTGACAT--TTCCAGACATCCAG-GTATGATTTTTATTTAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74048854 113 + 122973662 CAGAGGAGGGA--CAC-TTTTTTAGGTACT--AAAAAAGAATTGTTTGGCACTTCAT-GGCAGCAACATGTTTGATGTTAACTGACAT--TTCCAGACATCCAG-GTATGACTTTTATTTAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29195215 113 + 172585720 GAGAGGAGGGA--CAC-TTTTTCAGATACT--AAAAAAGAATTGTTTGGCACTTCAT-GGCAGCAAGATGTTTGATGTTTACTGACAT--TTCCAGACATCCAG-GCATGATTTTTATTTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28883713 113 - 170955103 GAGAGGAGGGA--CAC-TTTTTCAGATACT--AAAAAAGAATTGTTTGGCACTTCAT-GGCAGCAAGATGTTTGATGTTTACTGACAT--TTCCAGACATCCAG-GCATGATTTTTATTTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1858359 117 -   2996164 CAGAGGAGGGACCCAC-TTTTTCAGATACT--AAAAAAGAATTG-TTGGCACTTCATCGGCAGCAAGATGTTTGA-GTTTACTGACATCCTTCCAGACACCCAGCGCATGATCTTTATTTAG
i macNem1.NW_012011356v1   I 207 I 951
s cerAty1.NW_012001495v1     1749724 113 -   2157725 GAGAGGAGGAA--CAC-TTTTTCAGATACT--AAAAAAGAATTGTTTGGCACTTCAT-GGCAGCAAGATGTTTGATGTTTACTGACAT--TTCCAGACATCCAG-GCATGATTTTTATTTAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28202724 115 -  71996105 GAGAGGAGGGA--CAC-TTTTTTAGACACTAAAAAAAAAAATTGTTTGGCACTTCAT-GGCAGCAAGATGTTTGATGTTTACTGACAT--TTCCAGACATCCAG-GCATGATTTTTATTTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1864745 113 +   2316924 GAGAGGAGGGA--CAC-TTTTTCAGATACT--AAAAAAGAATTGTTTGGCACTTCAT-GGCAGCAAGATGTTTGATGTTTACTGACAT--TTCCAGACATCCAG-GCATGATTTTTATTTAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1733013 113 -   3067355 GAGAGGAGGGA--CAC-TTTTTTAGATACT--AAAAAAGAATTGTTTGGCACTTCAT-GGCAGCAAGATGTTTGATGTTTACTGACAT--TTCCAGACATCCAG-GCATGATTTTTATTTAG
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T

a score=91598.000000
s hg38.chr6_GL000254v2_alt     47793 20 +   4827813 CGACTTTAAAAGAAGGATGA
s panTro5.chr6              29018652 20 + 175400573 CGACTTTAAAAGAAGGATGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29262254 20 + 173848474 CGACTTTAAAAGAAGGATGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5061393 20 +   6154872 CGACTTTAAAAGAAGGATGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74048967 20 + 122973662 CGACTTTAAAAGAAGGATGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29195328 20 + 172585720 CTACTTTAAAGGAAGGATGA
i rheMac8.chr4             C 0 I 3518
s macFas5.chr4              28883826 20 - 170955103 CTACTTTAAAGGAAGGATGA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1749837 20 -   2157725 CTACTTTAAAGGAAGGATGA
i cerAty1.NW_012001495v1   C 0 I 1554
s chlSab2.chr17             28202839 20 -  71996105 CTACTTTAAAAGAAGGATGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1864858 20 +   2316924 CTACTTGAAAGGAAGGATGA
i manLeu1.NW_012104165v1   C 0 I 1498
s colAng1.NW_012115566v1     1733126 20 -   3067355 CTACTTTAAAAGAAGGATGA
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e macNem1.NW_012011356v1     1858476 951 -   2996164 I

a score=1883.000000
s hg38.chr6_GL000254v2_alt     47813 1 +   4827813 G
s panTro5.chr6              29018672 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29262274 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5061413 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74048987 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28883846 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28202859 1 -  71996105 G
i chlSab2.chr17            C 0 I 3449
s colAng1.NW_012115566v1     1733146 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 I 9668
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e manLeu1.NW_012104165v1     1864878 1498 +   2316924 I
e cerAty1.NW_012001495v1     1749857 1554 -   2157725 I
e macNem1.NW_012011356v1     1858476 951 -   2996164 I
e rheMac8.chr4              29195348 3518 + 172585720 I

a score=50581.000000
s hg38.chr6_GL000254v2_alt     47814 66 +   4827813 AAAAAAAacaaaaaa-acaaaaacaaaccatgagccaggcgtggtggcctgcatctatagtcccagc
s panTro5.chr6              29018673 66 + 175400573 AAAAAAAacaaaaaa-acaaaaacaaaccatgagccaggtgtggtggcctgcatctatagtcccagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29262275 65 + 173848474 AAAAAAAac-aaaaa-acaaaaacaaaccatgagccaggtgtggtggcctgcatctatagtcccagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5061414 67 +   6154872 AAAAAAAacaaaaaaccccaaaacaaaccatgagccagacgtgctggcctgcatctatagtcccagc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74048988 58 + 122973662 aaaaaaaaaaaaaaa---------aaaCCATGAgccaggcgtggtggcctgcatctatattcccagc
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28883847 38 - 170955103 -----------------------------TTCggccgggcatggtgtctcacgcctgtaatcccagc
i macFas5.chr4             C 0 I 3472
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e colAng1.NW_012115566v1     1733147 9668 -   3067355 I
e manLeu1.NW_012104165v1     1864878 1498 +   2316924 I
e chlSab2.chr17             28202860 3449 -  71996105 I
e cerAty1.NW_012001495v1     1749857 1554 -   2157725 I
e macNem1.NW_012011356v1     1858476 951 -   2996164 I
e rheMac8.chr4              29195348 3518 + 172585720 I

a score=387465.000000
s hg38.chr6_GL000254v2_alt     47880 427 +   4827813 tacacctactcaggaggctgaagaggaggcaggaaaacagcttgaggtcaggagttggaagccccagtgctctacgattgccctggtgaatagccactgcactctagtctggtcatcaaaacaagatcccgtctattaaaaatagaaagaaaataaaggaagaaagaaaagaaaggaaggaagaaagaaggaaggagcgagagagaaagaaaggaagga----gagagggcaaaaggaagaaaggaatggagggagggagagattgacagaacagattagaaaacataatccaactatacactatctaaaagaaactcatttcaaatataattatataagcaggctgaaattaaggggat-aaaatatattacatgcaaaagttaatcaaaagaaagcaaaagtgactatattaatataaacttaagaacaa
s panTro5.chr6              29018739 431 + 175400573 tacacctactcaggaggctgaagaggaggcaggaaaacagcttgaggtcaggagttggaagccccagtgctctacgattgccctggtgaatagccactgcactccagtctggtcaacaaaacaagatcccgtctattaaaaatagaaagaaaataaaggaagaaagaaaagaaaggaaggaagaaagaaggaaggagcgagagagaaagaaaggaaggaaagagagagggcaaaaggaagaaaggaatggagggagggagagattgacagaacagattagaaaacataatccaactatacactgtctaaaagaaactcatttcaaatataattatataagtaggctgaaattaaggggat-aaaatatattacatggaaaagttaatcaagagaaagcaaaagtgactatattaacataaacttaagaacaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29262340 431 + 173848474 tacacctactcaggaggctgaagaggaggcaggaaaacagcttgaggtcaggagttggaagccccagtgctctacgattgccctggtgaatagccactgcactccagtctggtcaacaaaacaagatcccgtctactaaaaatagaaagaaaataaaggaagaaaGAAaagaaaggaaggaagaaagaaggaaggagcgagagagaaagaaaggaaggaaagagagagggcaaaaggaagaaaggaatggagggaggGagagattgacagaacagattagaaaacataatccaactatacactgtctaaaagaaactcatttcaaatataattatataagtaggctgaaattaaggggat-aaaatatattacatggaaaagttaatcaagagaaagcaaaagtgactatattaacataaacttaagaacaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5061481 431 +   6154872 tacacctactcaggaggctgaagaggaggcaggaaaacagcttgaggtcaggagttggaagccccagtgctctacgattgccctggtgaatagccactgcactccagtctggtcaacaaaacaagatcccgtctattaaaaatagaaagaaaataaaggaagaaagaaaagaaaggaaggaagaaagaaggaaggagcgagagagaaagaaaggaaggaaagagagagggcaaaaggaagaaaggaatggagggagggagagattgacagaacagattagaaaacataatccaactatacactgtctaaaagaaactcatttcaaatataattatataagcaggctgaaattaaggggat-aaaatatattacatggaaaagttaatcaaaagaaagccaaagtgactgtattaatataaacttaagagcaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74049046 431 + 122973662 tacacctactcaggaggctgaagaggaggcaggaaaacagcttgaggtcaggagttggaagccccagtgctctacgattgccctggtgaatagccactgtactccaatctggtcaacaaaacaagatcccgtctattaaaaacagaaagaaaataaaggaagaaagaaaagaaaggaaggaagaaagaaggaaggagcgagagagaaagaaaggaaggaaagagagagggcaaaaggaagaaaggaatggagggagggagagattgacaaaacagattagaaaacataatccaactatacactgtctaaaagaaactcatttcaaatataattatataagcaggctgaaattaaggggataaaaatacattacatgcaaatgttaatcaaaagatagcaaaagtgactatattaatataaac-taaGAACAA
i nomLeu3.chr1a            C 0 M 34779
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e colAng1.NW_012115566v1     1733147 9668 -   3067355 I
e manLeu1.NW_012104165v1     1864878 1498 +   2316924 I
e chlSab2.chr17             28202860 3449 -  71996105 I
e cerAty1.NW_012001495v1     1749857 1554 -   2157725 I
e macNem1.NW_012011356v1     1858476 951 -   2996164 I
e macFas5.chr4              28883885 3472 - 170955103 I
e rheMac8.chr4              29195348 3518 + 172585720 I

a score=700634.000000
s hg38.chr6_GL000254v2_alt     48307 1367 +   4827813 agaaaatccaccaagaaggcataacaatcctaaatatgtatacaccaaacagcagagctgcaacatgtaaaaaaaaaaaaaaaaaaaaaaa------acaggaccgggcgcgctggctcacgactgtaatcccagcactttggaaggccgaggcgggcggatcacaaagtcaggagattgagaccatcctgaccaacatggtgaaaccccatctctactaaaaaaaaaaaaaaaaaaa-----------aaa-aaaaaagctgggcgtggtcgtgcgccctgtagtcccagctactcgggaggctgaagcaggagaattgcttgaacctgggaggcggaggttgcagtgagccaagatcgtgccactgcactccagcctgggcaacaaagtaaggctctgtctc-----------------aaaacaaaacaaaacaaaaCA--------------------CCCAGACAgggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcggatcacctgaggccaggagttggaaagtagcctggccaacatggtgaaacccgtctctactaaaaatacatacattagccgggcatggtggtgcagtggcgtgcacctgcagtcccagctactagggaggctgaggctcgagaattgcttgaacccgggaggtggaggttgcagtgagccgagatggtgccactacactccagcctgggtgacagagcgagactctgactcataaataaataaataaataaatgtaatacataaataaatattttaaaaaacaaaaaagatagaattaaaaaaatcgacaaatgcagttacattagagacttcacttctctctctcTCTTTTTTGTGAATTTGTTCTTATTGGGGAAGACGGCACAGGGTGGGAAATGTCGCCTTGGGCTATGGTATGCCCCACCTCCCAGAGAATGTCCATTTGCATTCTAATCTTCCTGGGATGCTTTATGGAACTTTTTCTTCTTCTTGGAGCTGCTCTTGCCAGCCGCCTCTTCAGGCCCACTGCTGACCAGCTCCTCTTTGGAGAATTTCCTCGTTTTCTTGGAGCCACTTCTGTGGCCTGACTCTTCGGTGTCATTAACTGTTTCCTCCTTGGGTGAAGACTTCTTCCTCTTGGGAAGACTGGTGCTGCCAGCGGTCTCTTCAAGATCGCTACTCATCAACTCCTCCTTGGAAAAAGATTTCTTTTTCTTGGGTTTGGAGAAAGAGATAGATGGGTCTTCCATTCCATTCTCCTGATGAATCTCCTGGGGCTTTTGCTTTTTCTTCTTTTTGGGTTTTTCAATCGTCTCCTCACAcgctctgtcgcccagtctggagtgcagtagcgcaatcttggctcactgcaagctccgcctcccgggttcacgccatt
s panTro5.chr6              29019170 1385 + 175400573 agaaaatccaccaagaaggcataacaatcctaaatatgtatacaccaaacagcagagctgcaacatgtaaagaaaaacaaaaaacaaaaaacaaaaaacaGgaccgggcgcgctggctcacggctgtaatcccagcactttgggaggccaaggtgggcggatcacaagatcaggagattgagaccatcctgaccaacatggtgaaaccccgtctctactaaaaataaaaaaaaataaataaataaaataaaa-aaaaaaccagggcgtggtggtgcgccctgtagtcccagctactcgggatgctgaggcaggagaattgcttgaacctgggaggcggaggttgcagtgagccaagatcgtgccactgcactccagcctgggcaacaaagtaaggctccgtctc-----------------aaaacaaaacaaaacaaaaca---------------aaaAACCCAGACAgggcgcagtggctcacgcctgcaatcccagcactttgggaggccgaggtgggcggatcacctgaggccaggagttggaaactagcctggccaacatggtgaaacgcgtctctactaaaaatacgtacattagccaggcatggtggtgcagtggcgtgcacctgcagtcccagctactagggaggctgaggctcgagaattgcttgaacccgggaggtggaggttgcagtgagccgagatggtgacactacactccagcctgggtgacagagcgagactctgactcataaataaataaataaaT----GTAATACATAAATAAATATTTTAAAAAACAAAAGAGATAGAATTTAAAAAATCGACAAATGCAGTTACATTGGAGACTTCACTTCTCTCTCTCTCTTTTTTGTGAATTTGTTTTTATTGGGGAACACGGCACAGGGTGGGAAATGTCACCTTGGGCTATGGTATGCCCCACCTCCCAGAGAATGTCCATTTGCATTCTAATCTTCCTGGGATGCTTTATGGAACTTTTTCTTCTTCTTGGAGGTGCTCTTGCCAGCCGCCTCTTCAGGCCCACTGCTGACCAGCTCCTCTTTGGAGAATTTCCTCTTTTTCTTGGAGCCACTTCTGTGGCCTGACTCTTCGGTGTCATTAACTGTTTCCTCCTTGGGTGAAGACTTCTTCCTCTTGGGAAGACTGGTGCTGCCAGCGGTCTCTTCAAGATCGCTACTCATCAACTCCTCCGTGGAAAAACATTTCTTTTTCTTGGGCTTGGAGAAAGAGATAGGTGGGTCTTCCATTCCATTCTCCTGATGAACCTCCTGGGGCTTTTGCTTTTTCTTCTTTTTGGGTTTTTCACTCGTCTCCTCACAcgctctgtcgcccaggctggagtgcagtggggcaatcttggctcactgcaagctccgcctcccgggttcacgccatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29262771 1352 + 173848474 agataatccaccaagaaggcataacaatcctaaatatgtatacaccaaacagcagagctgcaacatgtaaagaaaaacaaaaaacaaaaaacaaaaaacaGgaccgggcgcgctggctcacggctgtaatcccagcactttgggaggccaaggtgggcggatcacaaggtcaggagattgagaccatcctgaccaacatggtgaaaccccgtctctactaaaaataaaaataaataaataaattaaataaaataaaaaaccagggcgtggtggtgcgccctgtagtcccagctactcgggatgctgaggcaggagaattgcttgaacctgggaggcggaggttgcagtgagccaagatcgtgccactgcactccagcctgggcaacaaagtaaggctccgtctcNNNNNNNNNNNNNNNNNNNNGC-------------------------------------------------------------CGtgcaatcccagcactttgggaggccgaggtgggcggatcacctgaggccaggagttggaaactagcctggccaacatggtgaaacgcgtctctactaaaaatacgtacattagccaggcatggtggtgcagtggcgtgcacctgcagtcccagctactagggaggctgaggctcgagaattgcttgaacccgggaggtggaggttgcagtgagccgagatggtgacactacactccagcctgggtgacagagcgagactctgactcataaataaataaaT--------GTAATACATAAATAAATATTTTAAAAAACAAAAGAGATAGAATTTAAAAAATCGACAAATGCAGTTACATTGGAGACTTCACTTCTCTCTCTCTC-TTTTTGTGAATTTGTTTTTATTGGGGAACACGGCACAGGGTGGGAAATGTCACCTTGGGCTATGGTATGCCCCACCTCCCAGAGAATGTCCATTTGCATTCTAATCTTCCTGGGATGCTTTATGGAACTTTTTCTTCTTCTTGGAGGTGCTCTTGCCAGCCGCCTCTTCAGGCCCACTGCTGACCAGCTCCTCTTTGGAGAATTTCCTCTTTTTCTTGGAGCCACTTCTGTGGCCTGACTCTTCGGTGTCATTAACTGTTTCCTCCTTGGGTGAAGACTTCTTCCTCTTGGGAAGACTGGTGCTGCCAGCGGTCTCTTCAAGATCGCTACTCATCAACTCCTCCGTGGAAAAACATTTCTTTTTCTTGGGTTTGGAGAAAGAGATAGGTGGGTCTTCCATTCCATTCTCCTGATGAACCTCCTGGGGCTTTTGCTTTTTCTTCTTTTTGGGTTTTTCACTCGTCTCCTCACAcgctctgtcgcccaggctggagtgcagtggggcaatcttggctcactgcaagctccgcctcccgggttcacgccatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5061912 1369 +   6154872 agaaaatccaccaagaagacataacaatcctaaatatgtatacaccaaacagcagagctgcaacatgtaaagaaaaaaAAAAAAA------------ACAGgaccgggtgcgctggctcacgactgtaatcccaccactttgggaggccgaggcgggcggatcacaaggtcaggagattgagaccatcctcaccaacatggtgaaaccccgtctctactaaaaataaaaaaaaataaa----------aaaa-taaaaagctgggcgtggtggtgcgccctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaacctgggaggcggaggttgcagtgagccaagatcgtgccactgcactccagcctgggcaacaaagtaaggctccgtctc-------------aaaaaaaacaaaacaaaacaaaacaaaacgaaacaaaacaaaaAACCCAGACAgggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcggatcacctgaggccaggagttggaaaccagcctggccaacatggtgaaacccgtctctactaaaaatacatacattagccggtcatggtggtgcagtggcgtgcacctgcaatcccagctactaggaaggctgaggctcgagaattgcttgaacccgggaggtggaggttgcagtgagccgagatggtggcactacactccagcctgggtgacagagcgagactctgactcataaataaataaataaaT----GTaatacataaataaatattttaaaaaacaaaaaagatagaattaaaaaaatcgacaaatGCAGTTACATTGGAGACTTCACTTCTCTCTCTCTCTTTTTTGTGAATTTGTTTTTATTGGGGAACACGGCACAGGGTGGGAAATGTCACCTTGGGCTATGGTATGCCCCACCTCCCAGAGAATGTCCATTTGCATTCTAATCTTCCTGGGATGCTTTATGGAACTTT---TTCTTCTTGGAGGTTCTCTTGCCAGCCGCCTCTTCAGGCCCACTGCTGACCAGCTCCTCTTTGGAGAATTTCCTCTTTTT----------CTTCTGTGGCCTGACTCTTCGGTGTCATTAACTGTTTCCTCCTTGGGTGAAGACTTCTTCCTCTTGGGAAGACTGGTGCTGCCAGCGGTCTCTTCAAGATCGCTACTCATCAACTCCTCCTTGGAAAAAGACTTCTTTTTCTTGGGTTTGGAGAAAGAGATAGATGGGTCTTCCATTCCATTCTCCTGATGAACCTCCTGGGGCTTTTGCTTTTTCTTCTTTTTGGGTTTTTCACTCTTCTCCTCACAcgctctgtcgcccaggctggagtgcagtggggcaatcttggctcactgcaagctccgcctcccgggttcacgccatt
i gorGor5.CYUI01015250v1   C 0 C 0
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e colAng1.NW_012115566v1     1733147 9668 -   3067355 I
e manLeu1.NW_012104165v1     1864878 1498 +   2316924 I
e chlSab2.chr17             28202860 3449 -  71996105 I
e cerAty1.NW_012001495v1     1749857 1554 -   2157725 I
e macNem1.NW_012011356v1     1858476  951 -   2996164 I
e macFas5.chr4              28883885 3472 - 170955103 I
e rheMac8.chr4              29195348 3518 + 172585720 I
e nomLeu3.chr1a             74049477 34779 + 122973662 M

a score=172700.000000
s hg38.chr6_GL000254v2_alt     49674 199 +   4827813 ctcctgcctcagcctctgcgtagctgggactacaggcgcccgccaccacgcccggctaattttttgtatttttagtagagacggcgtttcaccatgttaggcagggtggtgtccatctcctgacctggtgatccacccgcctcggcctcccaaaatgctgggattacagacgtgagccaccacgcccgCGCCATTtctc
s panTro5.chr6              29020555 199 + 175400573 ctcctgcctcagcctctgcgtagctgggactacaggcgcccgccaccacgccaggctaaatttttgtatttttagtagagacggcgtttcaccatgttaggcaggatggtgtccatctcctgaactcatgatctacccgcctcggcctcccaaagtgctgggattacagacctgagccaccacgcccgcccCATTtctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29264123 199 + 173848474 ctcctgcctcagcctctgcgtagctgggactacaggcgcccgccaccacgccaggctaaatttttgtatttttagtagagacggcgtttcaccatgttaggcaggatggtgtccatctcctgaactcatgatccacccgcctcggcctcccaaagagctgggattacagacctgagccaccacgcccgcccCATTtctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5063281 199 +   6154872 ctcctgcctcagcctctgcgtaactgggactacaggcgcccgccaccacgcccggctaattttttgtatttttagtagagacggcgtttcaccatgttaggcaggatggtgtccatctcctgacctcatgatccacccgcctcggcctcccaaagtgctgggattacagacgtgacccaccacgcccgcccCATTtctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74084256 199 + 122973662 ctcctgcctcagcctctgcgtagctgggactacaggcgcccgccgccacgcccggctaattttttgtatttttagtggagacggggtttcaccgtgttaggcaggatgatgtcgatctcctgacctcgtgatctgcccgcctcggcctcccaaagtgctgggattaaaggtgtgagccaccacgccAGCCCCATTtctc
i nomLeu3.chr1a            M 34779 C 0
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e colAng1.NW_012115566v1     1733147 9668 -   3067355 I
e manLeu1.NW_012104165v1     1864878 1498 +   2316924 I
e chlSab2.chr17             28202860 3449 -  71996105 I
e cerAty1.NW_012001495v1     1749857 1554 -   2157725 I
e macNem1.NW_012011356v1     1858476 951 -   2996164 I
e macFas5.chr4              28883885 3472 - 170955103 I
e rheMac8.chr4              29195348 3518 + 172585720 I

a score=2372725.000000
s hg38.chr6_GL000254v2_alt     49873 1429 +   4827813 tcataataacagaaaaact--------------------------acacagaaaatctgcaaggatattgaagaaccccaaatcatcttcaggcaacagaattcagtcaccatgtatagaacagtccacacaagaaaagcagaacacgcattcatttcaaattcatacgtaacgtagatcaagatagaacatacctcataccttgggcctcaacaaatttaaaagaattgactgacatagtatgatccctaaccacaatgaaatcaaactaaaaatcagtcacagaaagacaacaaaaatatccaaacacttggaaaatgaacaacacactactaaatattccataggacaaagagaaagccttagtagagat-caaaaaaataaattaacctgaataaaaatgaaaacacaatgtatcaaaatttccaagacaactta----atctctgagagagaaatttacagcactaagtgcatacattagaaaagaaaaaagtcggccaggcgc-gtggctcacgcctgtaatcccagcactttgggaggccgaggcgcgtggattacaaggtcaggagttggagaccagcccggccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaagaaaagaaaaaagtctcaaatcagtcctttaagctcttacttgaagaactcaggtgggggaaa-------ataacccaaagcaaatagaagaaaggaaatgagcagaaataaacggaactgaacacacacgcacaaaatagaaaaacaaacaaaaagctagttcctttaaaagatcaataaaagaagacctctaggaggactgataattttttaagaagagagatgacacaaattgccaatatcaagaataaaaagaagagtatatcactatagactctgctgacatcaaaagggtaaatgaatactatgaacaacactttacacacaaatttgaaaacttagatgagatggactaattccttgaaaatcacaaactatcacaactcactcaatatgaaatatattttt-ctataaccttgtaactactaaggaaattaaatttgtgatataaaaac--tttaaaaaaaaaacagactcttcaggttcaagaaagtttcactgtataattcGTCGCCCCCGCCCTCCACCCCCTCCCCC-agaaggagtcttgctgtgttgcccaggctggaatgcagtagtgcaatct-------gggctcactgcaacctccaccttccaggttcaagcgattctcctgcctcagcctcccaggtagctaggattacaggcacgtgccagcacgcccggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtttccaactcctggcctcaggtgatccgc------ctgccccggcctctcaaagtgctgggattgcaggcatgagccaccgc-CTATGCCAATGTAGGCATATCTT
s panTro5.chr6              29020754 1405 + 175400573 tcataataacagaaaaact--------------------------acacagaaaatctgcaaggatattgaagaaccccaaatcatcttcagccaacagaattcagtcaccatgtatagaacagtccacacaagaaaagcagaacacgcattcatttcaaattcatacgtaacgtagatcaagatagaacatacctcataccttgggcctcaacaactttaaaagaattgactgacatggtatgatccctaaccacaacgaaatcaaactaaaaatcagtcacagaaagacaacaaaaatatccaaacacttggaaaatgaacaacacactactaaatattccatagcacaaagagaaagccttagtagagat-caaaaaaataaattaacctgaataaaaatgaaaacacaatatatcaaaatttccaagacaactta----atctctgagagagaaatttacagcactaagtgcatacattagaaaagaaaaaagtcggccaggcgc-gtggctcacgcctgtaatcccagcactttgggagggcgaggcgggtggattatgaggtcaggagttggagaccagcccggccaaAAAAAAAA------------------------------GAAagaaaagaaaaaagtctcaaatcagtcctttaagctcttacttgaagaactcaggtggggaaaagggcaaaataacccaaagcaaatagaagaaaggaaatgagcagaaataaatggaactgaacacacacgcacaaaatagaaaaacaaacaaaaagctagttcctttaaaagatcaataaaagaagacctctaggaggactgataattttttaagaagagagatgacacaaattaccaatatcaagaataaaaagaagagtatatcactgtagactctgctgacatcaaaagggtaaatgaatactatgaacaacactttacacacaaatttgaaaacttagatgagatggactaattccttgaaaatcacaaactaccacaactcactcaatatgaaatatattttttctataaccttgtaactactaaggaaattaaatttgtgatataaaaac--tttaaaaaaaaa---gactcttcaggttcaagaaagtttcactgtataattcATCACCCCCGCCCTCCACCCCCTCCCCCCagaaggagtcttgctctgttgcccaggctggagtgcagtagtgcaatct-------cggctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagcctcccaagtagctaggattacaggcaagtgccaccacgcccggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtttcaaactcctggcctcaggtgatccgc------ctgcctcggcctctcaaagtgctgggattgcaggcatgggccaccgc-CTATGCCAATGTAGGCATATCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29264322 1403 + 173848474 tcataataacagaaaaact--------------------------acacagaaaatctgcaaggatattgaagaaccccaaatcatcttcagccaacagaattcagtcaccatgtatagaacagtccacacaagaaaagcagaacacgcattcatttcaaattcatacgtaacgtagatcaagatagaacatacctcataccttgggcctcaacaactttaaaagaattgactgacatggtatgatccctaaccacaatgaaatcaaactaaaaatcagtcacagaaagacaacaaaaatatccaaacacttggaaaatgaacaacacactactaaatattccatagcacaaagagaaagccttagtagagat-caaaaaagtaaattaacctgaataaaaatgaaaacacaatatatcaaaatttccaagacaactta----atctctgagagagaaatttacagcactaagtgcatacattagaaaagaaaaaagtcggccaggcgc-gtggctcacgcctgtaatcccagcactttgggagggcgaggcgggtggattatgaggtcaggagttggagaccagcccggccaaAAAAAA--------------------------------GAAagaaaagaaaaaagtctcaaatcagtcctttaagctcttacttgaagaactcaggtggggaaaagggcaaaataacccaaagcaaatagaagaaaggaaatgagcagaaataaatggaactgaacacacacgcacaaaatagaaaaacaaacaaaaagctagttcctttaaaagatcaataaaagaagacctctaggaggactgataattttttaagaagagagatgacacaaattaccaatatcaagaataaaaagaagagtatatcactgtagactctgctgacaccaaaagggtaaatgaatactatgaacaacactttacacacaaatttgaaaacttggatgagatggactaattccttgaaaatcacaaactaccacaactcactcaatatgaaatatattttttctgtaaccttgtaactactaaggaaattaaatttgtgatataaaaac--ttttttaaaaaa---gactcttcaggttcaagaaagtttcactgtataattcATCACCCCCGCCCTCCACCCCCTCCCCCCagaaggagtcttgctctgttgcccaggctggagtgcagtagtgcaatct-------cggctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagcctcccaagtagctaggattacaggcaagtgccaccacgcccggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtttcaaactcctggcctcaggtgatccgc------ctgcctcggcctctcaaagtgctgggattgcaggcatgggccaccgc-CTATGCCAATGTAGGCATATCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5063480 1416 +   6154872 tcataataacagaacaact--------------------------acacagaaaatctgcaaggatattgaagaaccccaaatcatcttcagccaacagaattcagtcaacatgtatagaacagtccacacaagaaaagcagaacacgcattcatttcaaattcatacgtaacgtagatcaagatagaacatacctcataccttgggcctcaacaaatttaaaagaattgactgacatggtatgatccctaaccacaatgaaatcaaactaaaaatcagtcacagaaagacaacaaagatatccaaacacttggaaaatgaacaacacactactaaatattccataggacaaagagaaagccttagtagagat-caaaaaaataaattaacctgaataaaaatgaaaacacaatatatcaaaacttccaagacaactta----atctctgagagacaaatttacagcactaagtgcatacattagaaaagaaaaaagtcAgccaggtgc-gtggctcacgcctgtaatcccagcactttgggaggccgaggtgcgtggattacgaggtcaggagttggagaccagcccgtccaaaaaaaaaaaaaaaaaagaaa------------------gaaagaaaagaaaaaattctcatatcagtcctttaagctcttacttgaagaactcaggtggggaaaagggcaaaataacccaaagcaaatagaagaaaggaaatgagcaaaaataaatggaactgaacacacacgcacaaaatagaaaaacaaacaagaagctagttcctttaaaaggtcaataaaagaagacctctaggaggactgataattttttaagaagagagatgacacaaattaccaatatcaagaataaaaagaagagtatatcactatagactctgctgacatcaaaagggtaaatgaatactatgaacaacactttacacacaaatttgaaaacttagatgagatggactaattccttgataatcacaaactaccacaactcactcaatatgaaatatattttt-ctataaccttgtaactactaaggaaattaaatttgtgatataaaaac--ttaaaaaaaaaaacagactcttcaggttcaagaaagtttc-ctgtataattcGTCGCCCCCGCCCTCCACCCCCTCCCTC-agaaggagtcttgctctgttgcccaggctggagtgcagtagcgcaatct-------cggctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagcctcccaagtagctaggattacaggcacgtgacatcacgcctggctaatttttgtatttttagtagagat-gggtttcaccatgttggccaggctggtttccaactcctggcctcaggtgatccgc------ctgcctcggcctctcaaagtgctgggattgcaggcatgagccaccgc-CTGTGCCAATGTAGGCATATCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74084455 1426 + 122973662 tcataataacggaacaactacacagaaaatctgcaaggatattgaaCacagaaaatctgcaaggatattgaagaaccccaaatcatctttagccaacaaaattcagtcaccatgtatagaacagtccacacaagaaaagcagaacacacattcatttcaaattcatacataacatagatcaagatagaacatacctcatagcttgggcctcaacaaatttaaaagaattgactgacacggtatgatccctaaccacaatgaaatcaaactaaaaatcagtcacagaaagacaacaaaaatatccaaacacttggaaaatgaacaacacactactaaatattccataggacaaagagaaagccttagtagagataaaaaaaaataaattaacctgaataaaaatgaaaacacaatgtatcaaaatttccacaacaaa-ga----atctctgacagagaaatttacagcactaagtgcatacattagaaaagaaaaaagtcggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggtggattacgaggtcaggagttggagaccagcctggccaaAAAAAAAAAGG---------------------------GAAagaaaagaaaaacgtcccaagtcagtcctctaagcacttacttgaagaactcaggtggggaaaagggcgaaacaacccaaagcaaatagaaaaaagggaatgagcagaaataaatggaactgaacaaacacacacaaaatagaaaaacaaacaaaaagctagtttctttaaaagatcaataaaagaagatatctagaaggactgagaatttttt---aagagagatgacacaaattaccaatatgaagaataaaaagaaaagtatatcactatagactctgctgacatcaaaagggtaaacgaatactatgaacaacactttacacacaaatttgaaaacttagatgagatggactaattccttgaaaatcacaaactaccacaactcactcaatatgaaatatattttt-ctataaccttgtaactactaaggaaattaaatttgtgatataaa------cttaaaaaaaaacagactcttcaggttcaagaaagtttcactgtataattcCTCGCCCCCGCCCTCCCCCCGCTCC----agaaggagtcttgctctgtcgcccaggctggagtgcagtggtgcagtct-------cagctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagcctcccaagtagctaggattacaggcacgtgccaccacgcccagctaatgtttgtatttttagtaaagacagggtttcaccatgttggccaggctggtttccaactcctggcctcgggtgatctgc------ccgcctcggcctttcaaagtgctgggattgcagacatgagccaccgc-CTATGCCAATGTAGGCATATCTT
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     1751411 1403 -   2157725 tcataataaaagaacaaat--------------------------aaactgaaaatctacaaggatattgaagaaccccaaatcactttcagccagcagaattcaggcaccatgtgtagtacagtccacacaagaaaagcagaacacacattcatttcaaattcatacagaacatagatcaagatagaacatat-------cctgggcctcaacaaatttaaaagaagtgactgatacggtatgatccctaaccacaatgaaatcaaactaaaaatcagtcacagaaagacaacaaaaatatccaaacacttggaaaatgaaaaacacactactaaacagtccataggacaaagagaaagccttagtagagat-caaaaac-taaattaacctgaataaaaattaaaacacagtgtatcaaaatttccaagacaacttaaaggagctctgagagagaaatttacagcactaattgcatacattagaaaagaaaaaagtcAgcacg-----gtggctcacacctgtaatcccagctctttgggaggccgtgacatgtggattaggaggtcaggagttggagactaacctggccaaAAACAA--------------------------------Aagaaaaaagaaaaaagtatcaaatcagtcctctaagctcttacgtgaagaactcaggtggggaaaagggcaaaataacccaaagcaaataggagaaagcaaatgagcagaaataaatggaactgagcacacaca-aaaaaatggaaaaacaagcaaaaa-ctagttcctttaaaagatcaataaaagaagtcctctaggaggactgagaa-tttttaagaagagagatgacacaaacta-caatatcaagaataaaaagaggagtatatcactacagactctgctgacatcaaaagagtaaaggaatactatgaacaacactttacacacaaatttgaaaacttagatgagatggactaattccttgaaaatcactaactaccacaactccctcaatatgaaatatattttt-ctataaccttgtaactactaagggaattaaatttgtgatataaaaactttttttaaaaaaaccagactcttcaggttcaagaaagtttcactgtataattcATCTCCCCCCAACTCCAACCCCC------agaaggagtcttgctctgtctcccaggctggagtgcagtggtgcgatctcggctcacggctcactgcaacctccacctcctggattcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcaagtgccaccaagcctagctaatttttgtatttttagtagagacaaggtttcaccatgtcggccaggcagatttccaactcctggcctcaggtgatccacccgcctccgcctccgcctctcaaagtgctgggattgcaggcatgagccaccgcgccccgccAATGTAGGCATATTTT
i cerAty1.NW_012001495v1   I 1554 C 0
s manLeu1.NW_012104165v1     1866376 1403 +   2316924 tcataataaaagaacaaat--------------------------aaactgaaaatctacaaggatattgaagaaccccaaatcactttcagccagcagaattcaggcaccatgtgtagaacagtccacacaagaaaagcagaacacacattcatttcaaattcatacagaacatagatcaagatagaacatat-------cctgggcctcaacaaatttaaaagaagtgactgatacggtatgatccctaaccacaatgaaatcaaactaaaaatcagtcacagaaagacaacaaaaatatccaaacacttggaaaatgaaaaacacactactaaacagtccataggacaaagagaaagccttagtagagat-caaaaac-taaattaacctgaataaaaattaaaacacagtgtatcaaaatttccaagacaacttaaaggagctctgagagagaaatttacagcactagttgcatacattagaaaagaaaaaaTTCAgcacg-----gtggctcacacctgtaatcccagctctttgggaggccgtgacatgtggatcaggaggtcaggagttggagactaacctggccaaAAACAA--------------------------------Aagaaaaaagaaaaaagtatcaaatcagtcctctaagctcttacgtgaagaactcaggtggggaaaagggcaaaataacccaaagcaaataggagaaagcaaatgagcagaaataaatggaactgaacacacaca-aaaaaatggaaaaacaagcaaaaa-ctagttcctttaaaagatcaataaaagaagtcctctaggaggactgagaa-tttttaataagagagatgacacaaatta-caatatcaagaataaaaagaggagtatatcactacagactctgctgacatcaaacgagtaaaggaatactatgaacaacactttacacacaaatttgaaaacttagatgagatggactaattccttgaaaatcactaactaccacaactccttcaatatgaaatatattttt-ctataaccttgtaactactaagggaattaaatttgtgatataaaaacttttttaaaaaaaaccagactcttcaggttcaagaaagtttcactgtataattcATCTCCCCCCAACTCCACCCCCC------agaaggagtcttgctctgtctcccaggctggagtgcagtggtgcgatctcggctcacggctcactgcaacctccacctcctggattcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcaagtgccaccaaacctagctaatttttgtatttttagtagagacaaggtttcaccatgtcggccaggcagatttccaactcctggcctcaggtgatccacccgcctccgcctccgcctctcaaagtgctgggattgcaggcatgagccaccgcgccccgccAATGTAGGCATATTTT
i manLeu1.NW_012104165v1   I 1498 C 0
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e colAng1.NW_012115566v1     1733147 9668 -   3067355 I
e chlSab2.chr17             28202860 3449 -  71996105 I
e macNem1.NW_012011356v1     1858476  951 -   2996164 I
e macFas5.chr4              28883885 3472 - 170955103 I
e rheMac8.chr4              29195348 3518 + 172585720 I

a score=60401.000000
s hg38.chr6_GL000254v2_alt     51302 10 +   4827813 AAAAGGATAC
s panTro5.chr6              29022159 10 + 175400573 AAAAGGATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29265725 10 + 173848474 AAAAGGATAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5064896 10 +   6154872 AAAAGGATAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74085881 10 + 122973662 AAAAAGATAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29198866 10 + 172585720 aaaagGATAC
i rheMac8.chr4             I 3518 C 0
s macFas5.chr4              28887357 10 - 170955103 aaaagGATAC
i macFas5.chr4             I 3472 C 0
s macNem1.NW_012011356v1     1859427 10 -   2996164 aaaaGGATAC
i macNem1.NW_012011356v1   I 951 C 0
s cerAty1.NW_012001495v1     1752814 10 -   2157725 AAAAGGATAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28206309 10 -  71996105 aaaagGATAC
i chlSab2.chr17            I 3449 C 0
s manLeu1.NW_012104165v1     1867779 10 +   2316924 AAAAGGATAC
i manLeu1.NW_012104165v1   C 0 I 334
s colAng1.NW_012115566v1     1742815 10 -   3067355 aaaaGGATAC
i colAng1.NW_012115566v1   I 9668 C 0
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T

a score=31218.000000
s hg38.chr6_GL000254v2_alt     51312 5 +   4827813 ATGAC
s panTro5.chr6              29022169 5 + 175400573 ATGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29265735 5 + 173848474 ATGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5064906 5 +   6154872 ATGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74085891 5 + 122973662 ATGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29198876 5 + 172585720 ATGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28887367 5 - 170955103 ATGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1859437 5 -   2996164 ATGAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1752824 5 -   2157725 ATGAC
i cerAty1.NW_012001495v1   C 0 I 553
s chlSab2.chr17             28206319 5 -  71996105 ATGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1868123 5 +   2316924 ATGAC
i manLeu1.NW_012104165v1   I 334 C 0
s colAng1.NW_012115566v1     1742825 5 -   3067355 ATGAC
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T

a score=10505.000000
s hg38.chr6_GL000254v2_alt     51317 2 +   4827813 CT
s panTro5.chr6              29022174 2 + 175400573 CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29265740 2 + 173848474 CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5064911 2 +   6154872 CT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74085896 2 + 122973662 CT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29198881 2 + 172585720 CT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28887372 2 - 170955103 CT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1859442 2 -   2996164 CT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28206324 2 -  71996105 CT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1868128 2 +   2316924 CT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1742830 2 -   3067355 CT
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e cerAty1.NW_012001495v1     1752829 553 -   2157725 I

a score=197070.000000
s hg38.chr6_GL000254v2_alt     51319 35 +   4827813 GGGGATACTTTGAGTATTCAGATTAATTAATTTTT
s panTro5.chr6              29022176 35 + 175400573 GGGGATACTTTGAGTATTCAGATTAATTAATTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29265742 35 + 173848474 GGGGATACTTTGAGTATTCAGATTAATTAATTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5064913 35 +   6154872 GGGGATACTTTGAGTATTCAGATTAATTAATTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74085898 35 + 122973662 GAGGATACTTTGAGTATTGAGATTAATTAATTttt
i nomLeu3.chr1a            C 0 I 1214
s rheMac8.chr4              29198883 35 + 172585720 GGGGATACTTTGAGTATTGAGATTAATTAATTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28887374 35 - 170955103 GGGGATACTTTGAGTATTGAGATTAATTAATTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1859444 35 -   2996164 GGGGATACTTTGAGTATTGAGATTAATTAATTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1753382 35 -   2157725 GGGGATTCTTTGAGTATTGAGATTAATTAATTTTT
i cerAty1.NW_012001495v1   I 553 C 0
s chlSab2.chr17             28206326 35 -  71996105 GGGGATACTTTGAGTATTGAGATTAAATAATTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1868130 35 +   2316924 GGGGATACTTTGAGTATTGAGATTAATTAATTTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1742832 35 -   3067355 GGGGATATTTTGAGTATTGATGTTAATTAATTTTT
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T

a score=24618.000000
s hg38.chr6_GL000254v2_alt     51354 4 +   4827813 AAAG
s panTro5.chr6              29022211 4 + 175400573 AAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29265777 4 + 173848474 AAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5064948 4 +   6154872 AAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74087147 4 + 122973662 aaag
i nomLeu3.chr1a            I 1214 C 0
s rheMac8.chr4              29198918 4 + 172585720 AAAG
i rheMac8.chr4             C 0 I 1224
s macFas5.chr4              28887409 4 - 170955103 AAAG
i macFas5.chr4             C 0 I 1222
s macNem1.NW_012011356v1     1859479 4 -   2996164 AAAG
i macNem1.NW_012011356v1   C 0 I 1224
s cerAty1.NW_012001495v1     1753417 4 -   2157725 AAAG
i cerAty1.NW_012001495v1   C 0 I 1206
s chlSab2.chr17             28206361 4 -  71996105 AAAG
i chlSab2.chr17            C 0 I 1232
s manLeu1.NW_012104165v1     1868165 4 +   2316924 AAAG
i manLeu1.NW_012104165v1   C 0 I 1213
s colAng1.NW_012115566v1     1742867 4 -   3067355 AAAG
i colAng1.NW_012115566v1   C 0 I 1251
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T

a score=65.000000
s hg38.chr6_GL000254v2_alt     51358 2 +   4827813 -TG
s panTro5.chr6              29022215 2 + 175400573 -TG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29265781 2 + 173848474 -TG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5064952 2 +   6154872 -TG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74087151 2 + 122973662 -tg
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28888635 2 - 170955103 tt-
i macFas5.chr4             I 1222 C 0
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e colAng1.NW_012115566v1     1742871 1251 -   3067355 I
e manLeu1.NW_012104165v1     1868169 1213 +   2316924 I
e chlSab2.chr17             28206365 1232 -  71996105 I
e cerAty1.NW_012001495v1     1753421 1206 -   2157725 I
e macNem1.NW_012011356v1     1859483 1224 -   2996164 I
e rheMac8.chr4              29198922 1224 + 172585720 I

a score=151025.000000
s hg38.chr6_GL000254v2_alt     51360 34 +   4827813 TTTTTTAAAttctcccttcttacatcttcttttc
s panTro5.chr6              29022217 34 + 175400573 TTTTTTAAAttctcccttcttacatcttcttttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29265783 34 + 173848474 TTTTTTAAAttctcccttcttacatcttcttttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5064954 34 +   6154872 TTTTTTAAAttctcccttcttacatcttcttttc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74087153 34 + 122973662 tttttttaattctcccttcttacatcttcttttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29200146 34 + 172585720 ttttttaaCTTCTCGCTTCTTACATATTCTTTTC
i rheMac8.chr4             I 1224 C 0
s macFas5.chr4              28888637 34 - 170955103 ttttttaaCTTCTCGCTTCTTACATATTCTTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1860707 34 -   2996164 TTTTTTAACTTCTCGCTTCTTACATATTCTTTTC
i macNem1.NW_012011356v1   I 1224 C 0
s cerAty1.NW_012001495v1     1754627 34 -   2157725 ttttttaaCTTCTCGCTTCTTACATATTCTTTTC
i cerAty1.NW_012001495v1   I 1206 C 0
s chlSab2.chr17             28207597 34 -  71996105 TTTTTTAACTTCTCGCTTCTTACATATTATTTTC
i chlSab2.chr17            I 1232 C 0
s manLeu1.NW_012104165v1     1869382 34 +   2316924 TTTTTTAACTTCTCGCTTCTTACATATTCTTTTC
i manLeu1.NW_012104165v1   I 1213 C 0
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T
e colAng1.NW_012115566v1     1742871 1251 -   3067355 I

a score=1692776.000000
s hg38.chr6_GL000254v2_alt     51394 306 +   4827813 cttctgccttcAAGGGCTGTCACACGAAGAGTAGCGTAGGTGGATAAAAAAACAGAATGGTCAGTACCGCCTGGGGG-ATTTAGGTCCAGGTGAGGAGGTGAGAAGGTGGAATTCCCAGCTCTTAG-AAATGAAGACCCAGGAA-GTGGGTCGCTGCCTGTCCTTACCCTCGCCAGCCCCTGGGC-----CGGCACCGTGGCTGAAACCCAGCATGGATTTCATCTTGGGGACGTTGTGGCTCCAGTTTTGAGACTCAAGTAACGATGGATGGAGAGGAGAACAAGGACCACCTGAGCTCGACCACAAGAGCTC
s panTro5.chr6              29022251 307 + 175400573 cttctgccttcAAGGGCTGTCACACGAAGAGTAGCGTAGGTGGATAAAAAAACAGAATGGTCAGTACCGCCTGGGGGGATTTAGGTCCAGGTGAGGAGGTGAGAAGGTGGAATTCCCAGCTCTTAG-AAATGAAGACCCAGGAA-GTGGGTCGCTGCCCGTCCTTACCCTCGCCAGCCCCTGGGC-----CGGCACCGTGGCTGAAACCCAGCATGGATTTCATCTTGGGGACGTTGTGGCTCCAGTTTTGAGACTCAAGAAACGACGGATGGAGAGGAGAACGAGGACCACCTGAGCTCGACCACAAGAGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29265817 307 + 173848474 cttctgccttcAAGGGCTGTCACACGAAGAGTAGCGTAGGTGGATAAAAAAACAGAATGGTCAGTACCGCCTGGGGGGATTTAGGTCCAGGTGAGGAGGTGAGAAGGTGGAATTCCCAGCTCTTAG-AAATGAAGACCCAGGAA-GTGGGTCGCTGCCCGTCCTTACCCTCGCCAGCCCCTGGGC-----CGGCACCGTGGCTGAAACCCAGCATGGATTTCATCTTGGGGACGTTGTGGCTCCAGTTTTGAGACTCAAGAAACGACGGATGGAGAGGAGAACGAGGACCACCTGAGCTCGACCACAAGAGCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5064988 308 +   6154872 cttctgccttcAAGGGCTGTCACACGAAGAGTAGCGTACGTGGATAAAAAAACAGAATGGTCAGTACCGCCTGGGGGGATTTAGGTCCAGGTGAGGAGGTGAGAAGGTGGAATTCCCAGCTCTTAGAAAATGAAGACCCAGGAA-GTGGGTCGCTGCCTGTCCTTACCTTCGCCAGCCCCTGGGC-----CGGCACCGTGGCTGAAACCCAGCATGCATTTCATCTTGGGGACGTTGTGGCTCCAGTTTTGAGACTCAAGAAACGATGGATGGAGAGGAGAACAAGGACCACCTGAGCTCGACCACAAGAGCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74087187 302 + 122973662 cttctgccttctA----CGTTACACGAAGAGTAACGTAGGTGGATACAAAAACAGAATGGTCGGTACCGCCTGGGGGGATTTAGGTCCAGGTGAGGAGGTGAGAAAGTGGAATTCCCAGCTCTTAG-AAATGAAGACCCAGGAGCGTGGATCGCTGCCCGTCCTTACCCTCGCCAGCCCCTGGGCCGGCTCGGCTCCGTGGCTGAAACCCAGCATGGATTTCATCTTGGGGACGTTGTGGCTCCAGTTTTGAGACTCAAGAAACGGTGGATGGAGAGGAGAACGAGGACCACCTGCG-------AAAAGAGCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29200180 301 + 172585720 CTTCTGCCTTCAAGGGCTGTCACACGGAGAGTAAAGTAGGTGGATACAAAAACAGAAGGGTCAGTACCGCCTGGGGGGATTTAGGTCCAGGTGAGGAGGTGAGAAAGTGGAAATCCCAGCTCTTAG-AAATGAAAACCCAGGAGCGTGGGTCGCCGATCGTCCTTACCCTCGCCAGCCCCTGGGC-----CGGCACCGTGGCTGAAACCCAGCATGGATTTCATCTTGGGGAAACTGTGGCTCCAGTTCTGAGACTCAAGAAACGACGGATGGAGAGGAGAACGAGGACCACCTGCG-------AAAAGAGCGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28888671 301 - 170955103 CTTCTGCCTTCAAGGGCTGTCACACGGAGAGTAAAGTAGGTGGATACAAAAACAGAAGGGTCAGTACCGCCTGGGGGGATTTAGGTCCAGGTGAGGAGGTGAGAAAGTGGAAATCCCAGCTCTTAG-AAATGAAAACCCAGGAGCGTGGGTCGCCGACCGTCCTTACCCTCGCCAGCCCCTGGGC-----CGGCACCGTGGCTGAAACCCAGCATGGATTTCATCTTGGGGAAACTGTGGCTCCAGTTCTGAGACTCAAGAAACGACGGATGGAGAGGAGAACGAGGACCACCTGCG-------AAAAGAGCGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1860741 301 -   2996164 CTTCTGCCTTCAAGGGCTGTCACACGGAGAGTAAAGTAGGTGGATACAAAAACAGAAGGGTCAGTACCGCCTGGGGGGATTTAGGTCCAGGTGAGGAGGTGAGAAAGTGGAAATCCCAGCTCTTAG-AAATGAAAACCCAGGAGCGTGGGTCGCCGACCGTCCTTACCCTCGCCAGCCCCTGGGC-----CGGCACCGTGGCTGAAACCCAGCATGGATTTCATCTTGGGGAAACTGTGGCTCCAGTTCTGAGACTCAAGAAACGACGGATGGAGAGGAGAACGAGGACCACCTGCG-------AAAAGAGCGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1754661 301 -   2157725 CTTCTGCCTTCAAGGGCTGTCACACGGAGAGTAAAGTAGGTGGATACAAAAACAGAAGGGTCAGTACCGCCTGGGGGGATTTAGGTCCAGGTGAGGAGGTGAGAAAGTGGAAATCCCAACTCTTAG-AAATGAAAACCCAGGAGCGTGGGTCGCCGACCGTCCTTACCCTCGCCAGCCCCTGGGC-----CGGCACCGTGGCTGAAACCCAGCATGGATTTCATCTTGGGAACACTGTGGCTCCAGTTCTGAGACTCAAGAAACGACAGATGGAGAGGAGAACGAGGACCACCTGCG-------AAAAGAGCGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28207631 301 -  71996105 CTTCTGCCTTCAAGGGCTGTCACACGGAGAGTAAAGTAGGTGGATACAAAAATAGAAGGGTCAGTACCGCCTGGGGGGATTTAGGTACAGGTAAGGAGGTGAGAAAGTGGAAATCCCAGCTCTTAG-AAATGAAAACCCAGGAGCGTGGGTCGCTGACCGTCCTTACCCTCGCCAGCCCCTGGGC-----CGGCACCGTGGCTGAAATCCAGCATGGATTTCATCTTGGGGACACTGTGGCTCCAGTTCTGAGACTCAAGAAACGACGGATGGAGAGGAGAACGAGGACCACCTGCG-------AAAAGAGCGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1869416 301 +   2316924 CTTCTGCCTTCAAGGGCTGTCATACGGAGAGTAAAGTAGGTGGATACAAAAACAGAAGGGTCAGTACCGCCTGGGGGGATTTAGGTCCAGATGAGGAGGTGAGAAAGTGGAAATCCCAGCTCTTAG-AAATGAAAACCCAGGAGCGTGGGTCGCCGACCGTCCTTACCCTCGCCAGCCCCTGGGC-----CGGCACCGTGGCTGAAACCCAGCATGGATTTCATCTTGGGGACACTGTGGCTCCAGTTCTAAGACTCAAGAAACGACGGATGGAGAGGAGAACGAGGACCACCTGCG-------AAAAGAGCGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1744122 301 -   3067355 CTTCTGCCTTCAAGGGCTGTCACACGGAGAGTAAAGTAGGTGGATACAAAAACAGAAGGGTCAGTACCGCCTGGGGGGATTTAGGTCCAGGTGAGGAGGTGAGAAAGTGGAAATCCCAGCTCTTAG-AAATGAAAACCCAGGAGCATGGGTCGCTGACCGTCCTTACCCTCGCCAGCCCCTGGGC-----CGGCACCGTGGCTGAAACTCAGCATGGATTTCATCTTGGGGACACTGTGGCTCCAGTTCTGAGACTCAAGAAACCACGGAAGGAGAGGAGAACGAGGACCACCTGCG-------AAAAGAGCGC
i colAng1.NW_012115566v1   I 1251 C 0
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742            777073 3519 +   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T

a score=5207600.000000
s hg38.chr6_GL000254v2_alt     51700 921 +   4827813 GAGGAGGGAAGCAGGGACGCGGTGGGGTGCGCACCTGCGGCTGCGGCAGCAAAGGCGGAGGAGGAGCGAAGTGGACGAGCACCCGAG-GCT--GCCAGAGGATCTGGGCAGCCTGGGTGCCCATCTCTGCTGCGTTTCCTCGGTGTCCACGATAGG-------------TGAGAGGGCTCATTCCCTGTAGGAGAAGTGAGCTGAAAACACTTT-CCCCGCAAGATCTCCCTCGTTT-TACTCAAGGTAGTCGCGGCGTTGAGAACGCCTCGCAGCTCCTTTACTGGCTGGGGTACTGGGGAGCAGGGGTACCCTTGAGTTTTGGTACAGGCGGGTGGTATTGGTGGCTTCCGAGGAAAGGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTCGTCAGGGGGAGAGTGTTGAACCAGGTCTCTCTAGACCCTCCTG---CTTAAGCCCCTTTGTTATAGGTAGGAGAgtgtgttctgttttggtatttgag------------------------------tgtgtgtgtgtgtgt----------------------------------TTAGCTTCTTGAGCTTGGA--ATATGTCATGAAATACAAGAAAGATCAGGGAGTCTCAGTATATTTTAAACTTAAATTGGTTTTCAGAAGTACTTATACCTTGTTCCTAAGGAATTCAG-------GGTGTCCAGATTTCAACCTG----CCTAGCAGTGCGAAGCTCTA--TGAGTCGAATATCCTAGGCTTTCTTCCATATCAGCAAGCCTCTGAAA----TTTAGGTTTCTTTCTGGAGAATATCACCCACACTTTGGCAGTGGGCTCCTACATTGCCTACATCCAACTCTTGGAAGCAAGAAGAGTGGGCAAA-ACCAAGGTCACCACACAAAAGTATATCCCTACACGAGATAAGTGGAAAT--AAAGCACTGGCTTAGGTGTGGAGAGGAAGAGACAAATGTGAAAAC-GCAGAAGGTAGACAGACAGAGAACATCTTCCAAGGAGGAAG
s panTro5.chr6              29022558 925 + 175400573 GAGGAGGGAAGCAGGGACGCGGTGGGGTGCGCACCTGCGGCTGCGGCAGCAAAGGCGGAGGAGGAGCGAAGTGGACGAGAACCCGAG-GCT--GCCAGAGGATCTGGGCAGCCCGGGTGCCCATGTCTGCTGCGTTTCCTCGGTGTCCGCGATAGG-------------CGAGAGGGCTCATTCCCTGTAGGAGAAGAGAGCTGAAAACACTTT-CCCCGCAAGATCTCCCTCGTTT-TACTCAAGGTAGTCACGGCGTTGAGAATGCCTCACAGCTCCTTTACTAGCTGGGGTACTGGGGAGCAGGGGTACCCTTGAGTTTTGGTACAGGCGGGTGGTATTGGTGGCTTCCGAGGAAAGGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTCATGAGGGGGAGAGTGTTGAACCAGGTCTCTCTAGACCCTCCTG---CTTAAGCCCCTTTGTTATAGGTAGGAGAgtgtgttctgttttggtatttgag------------------------------tgtgtgtgtgtgtgt------------------------------gtgtTTAGCTTCTTGAGCTTGAA--ATATGTCATGAAATACAAGAAAGATCAGGGAGTCTCAGTATATTTTAAACTTAAATTGGTTTTCAGAAGTACTTATACCTTGTTCCTAAGGAATTCAG-------GGTGTCCAGATTTCAACCTG----CCTAGCAGTGCGAAGCTCTA--TGAGTCGAATATCCTAGGCTTCCTTCCATATCAGCAAGCCTCTGAAA----TTTAGGTTTCTTTCTGGAGAATATCACCCACACTTTGGCGGTGGGCTCCTACATTGCCTACATCCAACTCTTGGAAGCAAGAAGAGTGGGCAAA-ACCAATGTCACCACACAAAAGTATATCCCTACACGAGATAAGTGGAAAT--AAAGCACTGGCTTAGGTGTGGAGAGGAAGAGACAAATGTGAAAAC-GCAGAAGGTAGATAGACAGAGAACATCTTCCAAGGAGGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29266124 925 + 173848474 GAGGAGGGAAGCAGGGACGCGGTGGGGTGCGCACCTGCGGCTGCGGCAGCAAAGGCGGAGGAGGAGCGAAGTGGACGAGAACCCGAG-GCT--GCCAGAGGATCTGGGCAGCCCGGGTGCCCATGTCTGCTGCGTTTCCTCGGTGTCCGCGATAGG-------------CGAGAGGGCTCATTCCCTGTAGGAGAAGAGAGCTGAAAACACTTT-CCCCGCAAGATCTCCCTCGTTT-TACTCAAGGTAGTCGCGGCGTTGAGAACGCCTCACAGCTCCTTTACTAGCTGGGGTACTGGGGAGCAGGGGTACCCTTGAGTTTTGGTACAGGCGGGTGGTATTGGTGGCTTCCGAGGAAAGGACAGAGAAGCCGCCTATTTCCAA-TCTCTACTGTTCATGAGGGGGAGAGTGTTGAACCAGGTCTCTCTAGACCCTCCTG---CTTAAGCCCCTTTGTTATAGGTAGGAGAgtgtgttctgttttggtatttgag------------------------------tgtgtgtgtgtgtgt------------------------------gtgtTTAGCTTCTTGAGCTTGAA--ATATGTCATGAAATACAAGAAAGATCAGGGAGTCTCAGTATATTTTAAACTTAAATTGGTTTTCAGAAGTACTTATACCTTGTTCCTAAGGAATTCAG-------GGTGTCCAGATTTCAACCTG----CCTAGCAGTGCGAAGCTCTA--TGAGTCGAATATCCTAGGCTTTCTTCCATATCAGCAAGCCTCTGAAA----TTTAGGTTTCTTTCTGGAGAATATCACCCACACTTTGGCGGTGGGCTCCTACATTGCCTACATCCAACTCTTGGAAGCAAGAAGAGTGGGCAAA-ACCAATGTCACCACACAAAAGTATATCCCTACACAAGATAAGTGGAAAT--AAAGCACTGGCTTAGGTGTGGAGAGGAAGAGACAAATGTGAAAAC-GCAGAAGGTAGATAGACAGAGAACATCTTCCAAGGAGGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5065296 951 +   6154872 GAGGAGGGAAGCAGGGACGCGGTGGGGTGCGCACCTGCGGCTGCGGCAGCAAAGGCGGAGGAGGAGCAAAGTGGACGAGCACCCGAG-GCT--GCCAGAGGATCTGGGCAGCCCGGGTGCCCATCTTTGCTGCGTTTCCTCGGTGTCCGCGATAGG-------------CGAGAGGGCTCATTCCCTGTAGGAGAAGTGAGCTGAAAACACTTT-CCCCGCAAGATCTCCCTCGTTT-TACTCAAGGTAGTCGCGGCGTTGAGAACGCCTCGCAGCTCCTTTACTGGCTGGGGTACTGGGGAGCAGGGGTACCCTTGAGTTTTGGTACAGGCGGGTGGTATTTGTGGCTTCCGAGGAAAGGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTCGTGAGGGGGAGAGTGTTGAACCAGGTCTCTCTAGACCCTCCTG---CTTAAGCCCCTTTGTTATAGGTAGGAGAGTGTGTTCTGTTTTGGTATTTGAg------------------------------tgtgtgtgtgtgtgtgtgtgt----gtgtgtgtgtgtgtgtgtgtgtgtTTAGCTTCTTGAGCTTGGA--ATATGTCACGAAATACAAGAAAGATCAGGGAGTCTCAGTATATTTTAAACTTAAATTGGTTTTCAGAAGTACTTATACCTTGTTCCTAAGGAATTCAG-------GGTGTCCAGATTTCAACCTG----CCTAGCAGTGCGAAGCTCTA--TGAGTCGAATATCCTAGGCTTTCTTCCATATCAGCAAGCCTCTGAAA----TTTAGGTTTGTTTCTGGAGAATATCACCCACACTTTGGCAGTGGGCTCCTACATTGCCTACATCCAACTCTTGGAAGCAAGAAGAGTGGGCAAA-ACCAAGGTCACCACACAAAAGTATATCCCTACACGAGATAAGTGGAAAT--AAAGCACTGGCTTAGGTGTGGAGAGGAAGAGACAAATGTGAAAAC-GCAGAAGGTAGACAGACAGAGAACATCTTCCAAGGAGGAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74087489 948 + 122973662 GAGGAGGGAAGCAGGGACGCGGTGGGGTGCGCACCTGTGGTGGCAGCAGCAAAGGCGGAGGAGGAGCGAAGTGGACGAGCTCCCGAGAGCT--GCCAGAGGATCTGGGCAGCCCGGGTGCCCATCTCTGCTGCGTTTCCTCGGTGTCCGCGATAAGGTGTCCGCGATAACGAGAGGGCTCATTCCCTGTAGGAGAAGTGAGCTGAAAACACTTT-CCCCTCAAGATCTCCCTCTTTT-TGCTCAAGGTAGTCGCGGCGTTGAGAACGCCTCGCAGCTCCTTTACTGGCTGGGGCACTGGGGAGCAGGAGTACCCTTGAGTTTTGGTACAGGCGGGTGATATTGGTGGCTTCCGAGGGAAGGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTCGTGAGGGGGAGAGTGTTGAACCAGG--AAGAGAGATCCTCCTG---CTTAAGCCCCTTTGTTACAGGTAGAAGAGTGTGTTCTGTTTTGGTATTTGAg------------------------------tgtgtgtgtgtgtgt------------------gtgtatgtgtgtgtTTTTAGCTTCTTGAGCTTGGA--ATATGTCATGAAAAACAAGAAAGATAAGGGGGTCTCAGTATATTTTAAACTTAAATTGGTTTTCAGAAGTACTTATACCTCGTTCCTAAGGAATTCAG-------GGAGTCCAGATTTCCACCTG----CCTAGCAGTACGAAGCTCTA--TGAGTCGAATATCCT-TGCTTTCTTCCACATCAGCAAGCCTCTGAAA----TTTAGGTTTCTTTCTGGAGAATATCACCCATACTTTGGCAGTGGGCTCCTACATTGCCTACATCCAACTCTTGGAAGCAAGAAGAGTGGGGAAA-ACCAAGGTCACCGCACAAAAGTATATCCCTACACGAGATAAGTAGAAAT--AAAGCACTGGCTTAGGTGTGGAGAGGAAGAGACAAATGTGAAAAC-GCAGAAGGTAGACAGACAGAGAACATCTTCCAAGGAGGAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29200481 959 + 172585720 GAGGAGGGAAGCAGGGAAGCGGTGGGGTGCGCACCTGCGGCGGGGCAGGCAAAGGCGGAGGAGGAGCGAAGTGGACGAGCGCCTGAG-GCT--GCCAGAGGATCTGGGCAGCCCGGGTGCCCATCTCCACTGCGTTTCCTCGGTGTCCGCGATAAG-------------CGAGAGGGCTCATTCCCAGTAGGAAAAGTGAACTGGAAACACTTT--CCCGCAAGATCTCTCTGGTTTGTGCTTAAGGCAGTCGCGGCATTGAGAATGCCTCGCAACTCCTTTACTGGCTCGGACACTGGGGATCACGGGTACTCTTGAGTTTTGGTACAGGCGGGTGGTACTGGTGGCTTCCGAGGAAACGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTCGCGAAGGGGAGAGTGTTGAACCAGG--AAGAGAGACCCTCCTG---CTTAAGCCCCTTTGTTACAGGTAGGAGAGTGTGTTCTGTTTTCGTATTT--gagagagagagaaagaa--------------agaaagagagagagagagaga--------gagagagagagagagTGTGTTTAACTTCTTGAGCTTGGA--ATATGTCGTGAAAAACAAGAAAGGTCAGGGAGCCTCAGTATATTTTAAACTTAAATTGGGTTTCAGAAGCACTTCTACCTTGTTCCTAAGGAATTCAG-------GGTGTCCAGATTTCAACCTA----CCCAGCAGTGCGAAGCTCTA--TGAATCGAATAACCCAGGCTTTCTTCCACATCAGCAAGCCTCTGAAA----TTTAGGTTTCTTCCTGGAGAATATCACCCACACTTTGGCAGTGGGCTCCTACATTGCCTACACCCAACTCTTGGAAGCAAGAAGAGTGTGGAAA-GTCAAGGTCTCCACACAAAAGAGTATCCCTACACGAGATAAGTGGAAAT--AAAGCGCTGGCTTAGGTGTGGAAAGGAAGAGACAAATGTGAAAAC-GCAGAAGGTGGACAGACAGAGAACATCTTCCAAGGAGGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28888972 961 - 170955103 GAGGAGGGAAGCAGGGAAGCGGTGGGGTGCGCACCTGCGGCGGGGCAGGCAAAGGCGGAGGAGGAGCGAAGTGGACGAGCGCCTGAG-GCT--GCCAGAGGATCTGGGCAGCCCGGGTGCCCATCTCCACTGCGTTTCCTCGGTGTCCGCGATAAG-------------CGAGAGGGCTCATTCCCAGTAGGAAAAGTGAACTGGAAACACTTT--CCCGCAAGATCTCTCCCGTTTGTGCTTAAGGCAGTCGCGGCATTGAGAATGCCTCGCAGCTCCTTTACTGGCTCGGACACTGGGGATCACGGGTACTCTTGAGTTTTGGTACAGGCGGGTGGTACTTGTGGCTTCCGAGGAAACGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTCGCGAAGGGGAGAGTGTTGAACCAGG--AAGAGAGACCCTCCTG---CTTAAGCCCCTTTGTTACAGGTAGGAGAGTGTGTTCTGTTTTCGTATTTgagagagagagagaaagaa--------------agaaagagagagagagagaga--------gagagagagagagagTGTGTTTAACTTCTTGAGCTTGGA--ATATGTCGTGAAAAACAAGAAAGGTCAGGGAGCCTCAGTATATTTTAAACTTAAATTGGTTTTCAGAAGCACTTCTACCTTGTTCCTAAGGAATTCAG-------GGTGTCCAGATTTCAACCTA----CCCAGCAGTGCGAAGCTCTA--TGAATCGAATAACCCAGGCTTTCTTCCACATCAGCAAGCCTCTGAAA----TTTAGGTTTCTTCCTGGAGAATATCACCCACACTTTGGCAGTGGGCTCCTACATTGCCTACACCCAACTCTTGGAAGCAAGAAGAGTGTGGAAA-GTCAAGGTCTCCACACAAAAGAGTATCCCTACACGAGATAAGTGGAAAT--AAAGCGCTGGCTTAGGTGTGGAAAGGAAGAGACAAATGTGAAAAC-GCAGAAGGTGGACAGACAGAGAACATCTTCCAAGGAGGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1861042 983 -   2996164 GAGGAGGGAAGCAGGGAAGCGGTGGGGTGCGCACCTGCGGCGGGGCAGGCGAAGGCGGAGGAGGAGCGAAGTGGACGAGCGCCTGAG-GCT--GCCAGAGGATCTGGGCAGCCCGGGTGCCCATCTCCACTGCGTTTCCTCGGTGTCCGCGATAAG-------------CGAGAGGGCTCATTCCCAGTAGGAAAAGTGAACTGGAAACACTTT--CCCGCAAGATCTCTCCCGTTTGTGCTTAAGGCAGTCGCGGCATTGAGAATGCCTCGCAGCTCCTTTACTGGCTCGGACACTGGGGATCACGGGTACTCTTGAGTTTTGGTACAGGCGGGTGGTACTTGTGGCTTCCGAGGAAACGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTCGCGAAGGGGAGAGTGTTGAACCAGG--AAGAGAGACCCTCCTG---CTTAAGCCCCTTTGTTACAGGTAGGAGAgtgtgttctgttttcgtatttgagagagagagagaaagaaagagagagagagagagagagagagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtTTAACTTCTTGAGCTTGGA--ATATGTCGTGAAAAACAAGAAAGGTCAGGGAGCCTCAGTATATTTTAAACTTAAATTGGTTTTCAGAAGCACTTCTACCTTGTTCCTAAGGAATTCAG-------GGTGTCCAGATTTCAACCTA----CCCAGCAGTGCGAAGCTCTA--TGAATTGAATAACCCAGGCTTTCTTCCACATCAGCAAGCCTCTGAAA----TTTAGGTTTCTTCCTGGAGAATATCACCCACACTTTGGCAGTGGGCTCCTACATTGCCTACACCCAACTCTTGGAAGCAAGAAGAGTGTGGAAA-GTCAAGGTCTCCACACAAAAGAGTATCCCTACACGAGATAAGTGGAAAT--AAAGCGCTGGCTTAGGTGTGGAAAGGAAGAGACAAATGTGAAAAC-GCAGAAGGTGGACAGACAGAGAACATCTTCCAAGGAGGAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1754962 945 -   2157725 GAGGAGGGAAGCAGGGGAGCGGTGGGGCGCGCACCTGCGGCGGGGCAGGCAAAGGCGGAGGAGGAGCGAAGTGGACGAGCGCCTGAG-GCT--GCCAGAGGATCTGGGCAGCCCGGGTGCCCATCTCCACTGCGTTTCCTGGGTGTCCGCGATAAG-------------CGAGAGGGCTCATTCCCAGTAGGAAAAGTGAACTGAAAACACTTT--CCCGCAAGATCTCCCTCGTTTGTGCTTAAGGCAGTCGCGGCATTGAGAATGCCTCGCAGCTCCTTTACTGGCTCGGACACTGGGGATCACGGGTACTCTTGAGTTTTGGTACAGGCGGGTGGTACTGGTGGCTTCCGAGGAAACGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTCGCGAAGGGGAGAGTGTTGAATCAGG--AAGAGAGACCCTCCTG---CTTAAGCCCCTTTGTTACAGGTAGGAGAGTGTGTTCTGTTTTTGTATTTgagagagggagagaa------------------ggagagagagagagagagaga--------gagaga------------gTTTAACTTCTTGAGCTTGGA--ATATGTCGTGAAAAACAAGAAAGGTCAGGGAGCCTCAGTATATTTTAAACTTAAATTGGTTTTCAGAAGCACTTCTACCTTGTTCCTAAGGAATTCAG-------GGTGTCCAGATTTCAACCTA----CCTAGCAGTGTGAAGCTCTA--TGAATCGAATAACCTAGGCTTTCTTCCACATCATCAAGCCTCTGAAA----TTTAGGTTTCTTCCTGGAGAAAATCACCCACACTTTGGCAGTGGGCTCCTACATTGCCTACACCCAACTCTTGGAAGCAAGAAGAGTGTGGAAA-GTCAAGGTCTCCACACAAAAGAGTATCCCTACACGAGATAAGGGGAAAT--AAAGCGCTGGCTTAGGTGTGGAAAGGAAGAGACAAATGTGAAAAC-GCAGAAGGTGGACAGACAGAGAACATCTTCCAAGGAGGAAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28207932 972 -  71996105 GAGGAGGGAAGCAGGGAAGCGGTGGGGTGCGCACCTgcggcggcggcggcaaaggcggaggaggagcgaagcggaCGAGCGCCTGAG-GCT--GTCAGAGGATCTGGGCAGCCCGGGTGCCCATCTCCACTGCGTTTCCTCGGTGTCAGCGATAAG-------------CGAGAGGGCTCATTCCCAGTAGGAGAAGTGAACTGAAAACACTTT--CCCGCGAGATCTCTCTCGTTT-TGCTTAAGGCAGTCGCGGCATTGAGAATGCCTCGCAGCTCCTTTACTGGCTCGGACAC--GGGATCACGGGTACTCTTGAGTTTTGGTACAGGCGGGTGGTACTGGTGGCTTCCGAGGAAACGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTCGCGAAGGGGAGAGTGTTGAACCAGG--AAGAGAGACCCTCCTG---CTTAAGCCCTTTTGTTATAGGTAGGAGAgtgtgttctgtttttgtatttgagagagagagaaggagagagagagagag----agagagagagagagagagagaga------gagagtgtgtgtgtgtgtgtTTAACTTCTTGAGCTTGGA--ATATGTCGTGAAAAACAAGAAAGGTCAGGGAGCCTCAGTATATTTTAAACTTAAATTGGTTTTCAGAAGCACTTCTACCTTGTTCCTAAGGAATTCAG-------GTTGTCCAGATTTCAACCTA----CCTAGCAGTGCGAAGCTCTA--TGAATCGAATAACCTAGGCTTTCTTCTACATCAGCAAGCCTCTGAAA----TTTAGGTTTCTTCCTGGAGAATATCACCCACACTTTGGCAGTGGGCTCCTGCATTGCCTACACCCAACTCTTGGAAGCAAGAAGAGTGGGGAAA-GTCAAGGTCTCCACACAAAAGAGTATCCCCACTCGAGATAAGTGGAAATACAAAGCGCTGGTTTAGGTGTGGAAAGGAAGAGACAAATGTGAAAAC-GCAGAAGGTGGACAGACAGAGAACATCTTCCAAGGAGGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1869717 979 +   2316924 GAGGAGGGAAGCAGGGAAGCGGTGGGGTGCGCACCTGCGGCGGGGCAGGCAAAGGCGGAGGAGGAGCGAAGTGGACGAGCGCCTGAG-GCT--GCCAGAGGATCTGGGCAGCCCGGGTGCCCATCTCCACTGCGTTTCCTCGGTGTCCGCGATAAG-------------CGAGAGGGCTCATTCCCAGTAGGAAAAGTGAACTGAAAACACTTT--CCCGCAAGATCTCTCTCGTTTGTGCTTAAGGCAGTCGCGGCATTGAGAATGCCTCGCAACTCCTTTACTGGCTCGGACACTGGGGATCACGGGTACTCTTGAGTTTTGGTACAGGCGGGTGGTACTGGTGGCTTCCGAGGAAACGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTCGCGAAGGGGAGAGTGTTGAACCAGG--AAGAGAGACCCTCCTG---CTTAAGCCTCTTTGTTATAGGTAGGAGAGTGTGTTCTGTTTTCGTATTTgagagagagagagaatgagagagagagat----aaagagagagagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtTTAACTTCTTGAGCTTGGA--ATATGTCGTGAAAAACAAGAAAGGTCAGGGAGCCTCAGTATATTTTAAACTTAAATTGGTTTTCAGAAGCACTTCTACCTTGTTCCTAAGGAATTCAG-------GGTGTCCAGATTTCAACCTA----CCTAGCAGTGTGAAGCTCTA--TGAATCGAATAACCCAGGCTTTCTTCCACATCAGCAAGCCTCTGAAA----TTTAGGTTTCTTCCTGGAGAAAATCACCCACACTTTGGCAGTGGGCTCCTACATTGCCTACACCCAACTCTTGGAAGCAAGAAGAGTGTGGAAA-GTCAAGGTCTCCACACAAAAGAGTATCCCTACACGAGATAAGTGGAAAT--AAAGCGCTGGCTTAGGTGTGGAAAGGAAGAGACAAATGTGAAAAC-GCAGAAGGTGGACAGACAGAGAACATCTTCCAAGGAGGAAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1744423 893 -   3067355 GAGGAGGGAAACAGGGACGCGTTGGGGTGCGCACCTGCGGCGGCGGCGGCAAAGGCGGAGGAGGAGCGAAGAGGACGTGCGCCTGAG-GCT--GCCAGAGGATCTGGGCAGCCCGGGTGCCCATCTCCACTGCGTTTCCTCGGTGTCCGCGATAAG-------------CGAGAGGACTCATTCCCAGTAGGAGAAGTGAACTGAAAACACTTT--CCCGCAAGAACTCTCTCGTTT-TGCTTAAGGTAGTCGCGGCGTTGAGAATGCCTCGTAGCTCCTTTACTGGCTCGGACACTGGGGATCACGTGTACTCTTGAGTTTTCGTACAGGCGAGTGGTACTGGTGGCTTCCGAGGAAACGATAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTCTCGAGG-----------------------AAGAGACCCTCGTG---CTTAAGCCCCTTTGTTATAGGTAGAAGAGTGTGTTCTGTTTTCGTATTTgag------------------------------agagagagagagagagagaga----------------------------ATAGCTTCTTGAGCTTGGA--ATATGCCGTGAAAAACAAGAAATGTCAGGG------AGTATATTTTAAACTTAAATTGATTTTCAGAAGCACTTCTACCTTGTTCCTAAGGAATTCAG-------GGTGTCCAGATTTCAACCTA----CCTAGCAGTGCGAAGCTCTA--TGAATCAAATAACCTAGGCTTTCTTCCACATCAGCAAGCCTCTGAAA----TTTAGGTTTCTTCCTGGAGAATATCACCCACACGTTGGCAGTGGGCTCCTACATTGCCTACACCCAACTCTTGGAAGCAAGAAGAGTGGGGAAA-GTCAAGGTCACCACACAAAAGAGTATCCCTACACGAGATAAGTGGAAAT--AAAGCGCTGGCTTAGGTGTGGAAAGGAAGAGACAAATGTGAAAAC-GCAGAAGGTG----AACAGAGAACATCTTCCAAGGAGGAAG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1477152 799 -   2232465 GGAGAGGGCAGCTGAGGCGCTCCGGGGCGCgc------ggcggaggcggcggaggcggcggaggcggcaggcggA---GGGCGCGAG-GTTTGGCTGG------CGGGAAGGCCGCGCGCC----------GCGCTGCTTCTGGACACGGGGCGCG-------------CG---------------CGTAGAGGAAGCCGGCGGAAAGCGATTTTCCCCAGAAGGTAACCCTCCATG-TGACTGAGACTGGGCAGGCAGTGAGAGCTCCTCGCGTCTCTTTTGGTGGCTAGGACACCCGAGAGCACGCGTG----------------------------------------------------AGAGA---CACGGATTTCCAATTTCCTTGCGTTTGTGAGGCGGAAAGTGTGGAACGCAG--AAGCAGGATTTGCCCGAGTCTTAAACCC----------------AGAGACTTTAGCGCCTCAAC-TGTAAG------------------------------TGAGAGAGGGTG---------------------------------GTTTTTAGCTTGTTAAGCTTGAATTATAAGACGTGGA----AAGTAAGGTAAGGTAGTAACGGAATATTTTAAACTTGAAATGATTTTTAGAAAGGCTGCTCTGTTGTTTCTAAGTAGTTTAGTTGGTAAAGTATCAAGATTTCAACCTAGAGGGCTGGGAGCACGAAACTCTATGTGAGTCTAATACCTTAGGCTTTCTTCCATA--AGTCAGCCCCTGGAAATTTTTTAGGTTTCTTTCTAGAGAATCTCGCCCGAGCTTTTACAGTGGGTTCCTATATTGCTCGCATCCAACTCTTGGAAGAGTGAAGAACCGGGAAACGCCGAAGTTACCATAC-AAAGAAGACCCTTACAAGATTTGACTGTAAAT--ATATTAATGGCTTAGACGTGGAAAGGAAGATAAAAATGTGAAAAAGGTAGAAGGTAG------------------------------
i otoGar3.GL873742         T 12097 I 112
e saiBol1.JH378348            176754 22808 -    375362 T
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T

a score=2412970.000000
s hg38.chr6_GL000254v2_alt     52621 425 +   4827813 ------AGTCTCCTAACCACAAGGAACTCTCTACTTAATGCTGCGAAGATATTTTAATTACATTTTATGCATTAGATTGC-tttttttgtttgtttttgttttttgtttttgatggagtctcgttgtgtcaccaagcttgagtgcagtggtgccatctcggctcactgcaatctccgcttcccaggttcaagggattctcctgcctcagcctccccgtagctgggactacaggcatggccatcatgcccagctaa-ttttt-tattctcctgcctcagcctccccggccaccatgcccagctaatttttgtatttttggtagagacgggtttcaccatgttggccaggaatgtctcgatctcttgacctcgtgattcacccgacttggcctcccaaagtgctgggattacaagcatgagccaccgcccccagcc
s panTro5.chr6              29023483 425 + 175400573 ------AGTCTCCTAACAACAAGGAACTCTCTACTTAATGCTGCGAAGATATTTTAAATACATTTTATGCATTAGATTCC-tttttttgtttgtttttgttttttgtttttgatggagtcttgctgtgtcaccaggcttgagtgcagtggtgccatctcggctcactgcaatctccgcttcccaggttcaagggattctcctgcctcagcctccccgtagctgggactacaggcatggccaccatgcccagctaa-ttttt-tattctcctgcctcagcctccccggccaccatgcccagctaatttttgtatttttggtagagacgggtttcaccatgttggccaggatggtctcgatctcttgacctcgtgattcacccgacttggcctcccaaagtgctgggattacaagcatgagccaccgcccccagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29267049 423 + 173848474 ------AGTCTCCTAACAACAAGGAACTCTCTACTTAATGCTGCGAAGATATTTTAAATACATTTTATGCATTAGATTGC--ttttttgtttgtttttg-tttttgtttttgatggagtcttgctgtgtcaccaggcttgagtgcagtggtgccatctcggctcactgcaatctccgcttcccaggttcaagggattctcctgcctcagcctccccgtagctgggactacaggcatggccaccatgcccagctaa-ttttt-tattctcctgcctcagcctccccggccaccatgcccagctaatttttgtatttttggtagagacgggtttcaccatgttggccaggatggtctcgatctcttgacctcgtgattcacccgacttggcctcccaaagtgctgggattacaagcatgagccaccgcccccagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5066247 425 +   6154872 ------AGTCTCCTAACAACAAGGAACTCTCTACTTAATGCTGCGAAGATATTTTGATTACATTTTATGCATTAGGTTGC-tttttttgtttgtttttgttttttgtttttgatggagtctcgctgtgtcaccaagcttgagtgcagtggtgccatctcggctcactgcaatctctgcttcctaggttcaagggattctcctgcctcagcctccccgtagctgggactacaggcatggccaccatgcccagctaa-ttttt-tattctcctgcctcagcctccccggccaccatgcccagctaatttttgtatttttggtagagacgggtttcaccatattggccaggatggtctcgatctcttgacctcgtgattcacccgacttggcctcccaaagtgctgggataacaagcatgagccaccgcccccagcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74088437 431 + 122973662 AGGAACAGTCTCCTAACAACAAGGAACTCTCTACTTAATGCTGCGAAGATATTTTAATTACATTTTATGCATTAGATTGC-Gttttttgtttgtttttgttttttgtttttgatggagtctcgttgtgtcaccaggcttgagtgcagtggcgccatctcggctcactgcaatctccgcttcccgggttcaagggattctcctgcctcagcctccccatagctgggactacaggcgtggccaccatgcccagctaa-ttttt-tattctcctgcctcagcctccccagccaccatgcccagctaatttttgtatttttggtagagacgggtttcaccatgttggccaggatggtctcactctcttgacctcgtgattcacccgacttggcctcccaaagtgctgggattacaagcatgagccactgctcccagcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29201440 432 + 172585720 AGGAACAGTCTGCTAACAACAAGGAATTCTCTACTTAATGCTGCGAAGATATTTTAATTACATTTTATGCATTAGACTGAGCttttttgtttgtttttgttttttgtttttgatggagtctcattgtgtcaccaggcttgagtgcagtggcgcgatctcggctcactgtaatctccgcttccgaggttcaaaggattctcctgcctcagcctccccgtagctggaactacaggcgcagccaccatgcccagttaa-ttttt-tattttcctgcctcagcctccctggccaccatgctcagctaatttttgtatttttggtagagacgggtttcaccatgttggacaggatggtcttgatctcttgacctggtgattcacccgacttggcctcccaaagtgctgggattacaggtgtgagccaccgcccccagcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28889933 432 - 170955103 AGGAACAGTCTGCTAACAACAAGGAATTCTCTACTTAATGCTGCGAAGATATTTTAATTACATTTTATGCATTAGACTGAGCttttttgtttgtttttgttttttgtttttgatggagtctcattgtgtcaccaggcttgagtgcagtggcgcgatctcggctcactgtaatctccgcttccgaggttcaaaggattctcctgcctcagcctccccgtagctggaactacaggcgcagccaccatgcccagttaa-ttttt-tattttcctgcctcagcctccctggccaccatgctcagctaatttttgtatttttggtagagacgggtttcaccatgttggacaggatggtcttgatctcttgacctggtgattcacccgacttggcctcccaaagtgctgggattacaggtgtgagccaccgcccccagcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1862025 432 -   2996164 AGGAACAGTCTGCTAACAGCAAGGAATTCTCTACTTAATGCTGCGAAGATATTTTAATTACATTTTATGCATTAGACTGAGCttttttgtttgtttttgttttttgtttttgatggagtctcattgtgtcaccaggcttgagtgcagtggcgcgatctcggctcactgtaatctccgcttccgaggtgcaaaggattctcctgcctcatcctccccgtagctggaactacaggcgcagccaccatgcccagttaa-ttttt-tattttcctgcctcagcctccctggccaccatgcccagctaatttttgtatttttggtagagacgggtttcaccatgttggacaggatggtcttgatctcttgacctcgtgattcacccgacttggcctcccaaagtgctgggattacaggtgtgagccaccgcccccagcc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1755907 433 -   2157725 AGGAACAGTCTGCTAACAACAAGGAATTCTCTACTTAATGCTGCGAAGATATTTTAATTACATTTTATGCATTAGACTGAACTTTTTTGTTTGtttttgttttttgtttttgatggagtctcattgtgtcaccaggcttgagtgcagtggcgcgatctccgctcactgtaatctccgcttctgaggttcaaaggattctcctgcctcagcctccccgtagctggaactacaggcgcagccaccatgcccagctaa-tttttctattttcctgcctcagcctccctggccaccatgcccagctaatttttgtatttttggtagagatgggtttcaccatgttggacaggatggtcttgatctctttacctcgtgattcgcccgacttggcctcccaaagtgctgggattacaggtgtgagccaccgcccccagcc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28208904 432 -  71996105 AGGAACAGTCTGCTAACAACAAGGAATTCTCTACTTAATGCTGCGAAGATATTTTAATTACATTTTATGCATTAGACTGTGCttttttgtttgtttttgttttttgtttttgatggagtctcgttgtgtcaccaggcttgagtgcagtggtgcgatctcggctcactgtaatctccgcttcccaggttcaaaggattctcctgcctcagcctccccgtagctggaactacaggcgcagctaccatgcccagctaa-ttttt-tattttcctgcctcagcctccctggccaccatgcccagctaatttttgtagttttggtagagacgggtttcaccctggtggccaggatggtcttgatctcttgacctcgtgatttgcccgacttggcctcccaaagtgctgggattaccggtgtgagccaccgcccccagcG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1870696 433 +   2316924 AGGAACAGTCTGCTAACAACAAGGAATTCTCTACTTAATGCTGCGAAGATATTTTAATTACATTTTATGCATTAGACTGAACTTTTTTGTTTGtttttgttttttgtttttgatggagtctcattgtgtcaccaggcttgagtgcagtggcccgatctcggctcactgtaatctctgcttccgaggttcaaaggattctcctgcctcagcctccccgtagctggaactacaggcgcagccaccatgcccagctaatttttt-tattttcctgcctcagcctccctggccaccatgcccagctaatttttgtatttttggtagagatgggtttcaccatgttggacaggatggtcttgatatcttgacctcgtgattcgcccgacctggcctcccaaagtgctgggattacaggtgtgagccactgcccccagcc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1745316 420 -   3067355 AGGAACAGTCTGCTAACAACAAGGAATTCTCTACTTAATGCTGCGAAGATATTTTAATTACATTTTATGCATTAAACTGCGCttttttgtttgtttttgttttttgtttttgatggagtctcgttgtgt------------gtgcagtggcgcgatctcggctcactgtaatctccgcttcccgggttcaaaggattctcctgcctcagcttccctgtagctggaactacaggcgcagccaccatgcccagctaa-ttttt-tattctcctgcctcagcctccctggccaccatgcccagctaatttttgtatttttggtagagacgggtttcaccatgttggccaggatggtcttaatctcttgacttcgtgattcacccgacttggcctcccaaagtgctgggactacaggcgtgagccaccgcccccagcc
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            176754 22808 -    375362 T
e otoGar3.GL873742           1477951 112 -   2232465 I
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T

a score=429523.000000
s hg38.chr6_GL000254v2_alt     53046 78 +   4827813 ACATAGACTGGGTTTTTAACAACTGGATCTTAGACCAGAATATTGGCAGAATTGGTGGGGGCTTGACAGAGAGCAGGG--
s panTro5.chr6              29023908 78 + 175400573 ACATAGACTGGGTTTTTAACAACTGGATCTTAGACCAGAATATTGGCGGAATTGGTGGGGGCTTGACAGAGAGCAGGG--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29267472 78 + 173848474 ACATAGACTGGGTTTTTAACAACTGGATCTTAGACCAGAATATTGGCGGAATTGGTGGGGGCTTGACAGAGAGCAGGG--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5066672 78 +   6154872 ACATACACTGGGTTTTTAACAACTTGATCTTAGACCAGAACATTGGCAGAATTGGTGGGGGCTTGAGAGAGAGCAGGG--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74088868 77 + 122973662 ACATAGACTGGG-TTTTAACAACTTGATCTTAGACCAGAACATTGGCAGAATTGGTGGGGGCTAGAGAGACAGCAGGG--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29201872 77 + 172585720 ACATAGACTGGG-TTTTAACAACTTGATCTTAGACCAGAACATTGGCAGAATTAGTGGGGGCTGGAGAGACAGGAGGG--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28890365 77 - 170955103 ACATAGACTGGG-TTTTAACAACTTGATCTTAGACCAGAACATTGGCAGAATTAGTGGGGGCTGGAGAGACAGGAGGG--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1862457 77 -   2996164 ACATAGACTGGG-TTTTAACAACTTGATCTTAGACCAGAACATTGGCAGAATTAGTGGGGGCTGGAGAGACAGGAGGG--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1756340 77 -   2157725 ACATAGACTGGG-TTTTAACAACTTGATCTTAGACCAGAACATTGGCAGAATTAGTGGGGGCTGGAGAGACAGGAGGG--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28209336 77 -  71996105 ACATAGACTGGG-TTTTAACAACTTGATCTTAGACCAGAACAATGGGAGAATTAGTGGGGGCTGGAGAGACAGGAGGG--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1871129 77 +   2316924 ACATAGACTGGG-TTTTAACAACTTGATCTTAGACCAGAACATTGGCAGAATTAGTGGGGGCTGGAGAGACAGGAGGG--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1745736 77 -   3067355 ACATAGACTGGG-TTTTAACAACTCGATCTTAGATCAGAACATTGGCAGAATTGGTGGGAGCTGGAGAGACAGGAGGG--
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1478063 60 -   2232465 ACATAGAGTACG-TTTTAACAATTTAATGTGAGACCAGAAAA-------------------CTGGAGACAGAGCTAAGAT
i otoGar3.GL873742         I 112 C 0
e saiBol1.JH378348            176754 22808 -    375362 T
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I
e calJac3.chr4             171341595 17752 - 171630274 T

a score=44230.000000
s hg38.chr6_GL000254v2_alt     53124 6 +   4827813 -TGAATT
s panTro5.chr6              29023986 6 + 175400573 -TGAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29267550 6 + 173848474 -TGAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5066750 6 +   6154872 -TGAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74088945 6 + 122973662 -TGAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29201949 6 + 172585720 -TGAATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28890442 6 - 170955103 -TGAATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1862534 6 -   2996164 -TGAATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1756417 6 -   2157725 -TGAATC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28209413 6 -  71996105 -TGAATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1871206 6 +   2316924 -TGAATC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1745813 6 -   3067355 -TGAATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171323843 6 - 171630274 -TGAGTC
i calJac3.chr4             T 17752 C 0
s saiBol1.JH378348            153946 6 -    375362 -TGAGTC
i saiBol1.JH378348         T 22808 C 0
s otoGar3.GL873742           1478123 7 -   2232465 CAGAGTT
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      103164 10486 -    285216 T
e cebCap1.NW_016108108v1      150827 4248 -    373274 I

a score=2483698.000000
s hg38.chr6_GL000254v2_alt     53130 259 +   4827813 CCAACCCTGAGGGTGGAGCAAGAATGATTACAGTGTCTTCCTCAGAGCTTAGAAACTTCCAAGCTCTAAGGAAAGGCCTTAGGTTTCAAATTGAAAGGCCAAAATAGCTTGAGATGGCTCCAGGTATTTTGGCTGGAAAGAGTCTCCTGGC-TCTAAAGAACCCCTGTGAGTTCT-----TCTACAGGAAAATCAGAGGCTCTTG-TG-TGTGATCTCT--AGTCATCTAAAATATTGAAGGTCTCAAAGAGGTAATAAATCCACTCTC
s panTro5.chr6              29023992 259 + 175400573 CCAACCCTGAGGGTGGAGCAAGAATGATTACAGTGTCTTCCTCAGAGCTTAGAAACTTCCAAGCTCTAAGGAAAGGCCTTAGGTTTCAAATTGAAAGGCCAAAATAGCTTGAGAAGGCTCCAGGTATTTTGGCTGGAAAGAGTCTCCTGGC-TCTAAAGAACCCCTGTGAGTTCT-----TCTACAGGAAAATCAGAGGCTCTTT-TG-TGTGATCTCT--AGTCATCTAAAATATTGAAGGTCTCAAAGAGGTAATAAATCCACTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29267556 259 + 173848474 CCAACCCTGAGGGTGGAGCAAGAATGATTACAGTGTCTTCCTCAGAGCTTAGAAACTTCCAAGCTCTAAGGAAAGGCCTTAGGTTTCAAATTGAAAGGCCAAAATAGCTTGAGAAGGCTCCAGGTATTTTGGCTGGAAAGAGTCTCCTGGC-TCTAAAGAACCCCTGTGAGTTCT-----TCTACAGGAAAATCAGAGGCTCTTT-TG-TGTGATCTCT--AGTCATCTAAAATATTGAAGGTCTCAAAGAGGTAATAAATCCACTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5066756 259 +   6154872 CCAACCCTGAGGGTGGAGCAAGAATGACTACAGTGTCTTCCTCAGAGCTTAGAAACTTCCAAGCTCTAAGGAAAGGCCTTAGGTTTCAAATTGAAAGGCCAAAATAGCTTGAGATGGCTCCAGGTATTTTGGCTGGAAAGAGTCTCCTGGC-TCTAAAGAACCCTTGTGAGTTCT-----TCTACAGGAAAATCAGAGGCTCTTG-TG-TGTGATCTCT--AGTCATCTAAAATATTGAACGTCTCAAAGAGGTAATAAATCCACTCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74088951 245 + 122973662 CCAACCCTGAGGGTGGAGAAAGAATGATTACAGTGTCTTCCTTAGAGCTTAGAAACTTCCAAG--------------CCTGGGTTTCAAATTGAAAGGCCAAAATAGCTTGAAATGGCTCCAGGTGTTTTGGCTGGAAAGAGTTTCCTGGC-TCTAAAGAACTCCTGTGAGTTCT-----TCTACAGGAAAATCAAAGGCTCTTG-TG-TGTGATCTCT--AGTCATCTAAAATATTGAAGATCTCAAAGAGGTAATAAATCCATTCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29201955 245 + 172585720 CCAACCCTGAGGATGGAGAAAGAGTGATTACAATGTCTTCCTTAGAGCTTAGAAACTTCCAAG--------------CCTAGGTTTCAAATTGAAAGGCCAAAATAGCTCGAGAGGGCTCCAGGTATTTTGGCTGGAAATAGTCTCCTGGC-TCTAAAGAACCCCTGTGAGTTCT-----TCTACAGGAAAATTAAAGGCTCTTG-TG-TGTGAGCTCC--AGCCATCTAAAATATTGAAGGTCTCAAAGAGATAACAAATTCACTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28890448 245 - 170955103 CCAACCCTGAGGATGGAGAAAGAGTGATTACAATGTCTTCCTTAGAGCTTAGAAACTTCCAAG--------------CCTAGGTTTCAAATTGAAAGGCCAAAATAGCTCGAGAGGGCTCCAGGTATTTTGGCTGGAAATAGTCTCCTGGC-TCTAAAGAACCCCTGTGAGTTCT-----TCTACAGGAAAATTAAAGGCTCTTG-TG-TGTGAGCTCC--AGCCATCTAAAATATTGAAGGTCTCAAAGAGATAACAAATTCACTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1862540 245 -   2996164 CCAACCCTGAGGATGGAGAAAGAGTGATTACAGTGTCTTCCTTAGAGCTTAGAAACTTCCAAG--------------CCTAGGTTTCAAATTGAAAGGCCAAAATAGCTCGAGAGGGCTCCAGGTATTTTGGCTGGAAATAGTCTCCTGGC-TCTAAAGAACCCCTGTGAGTTCT-----TCTACAGGAAAATTAAAGGCTCTTG-TG-TGTGAGCTCC--AGCCATCTAAAATATTGAAGGTCTCAAAGAGACAACAAATTCACTTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1756423 245 -   2157725 CCAACCGTGAGGATGGAGAAAGAGTGATTACAGTGTCTTCCTTAGAGCTTAGAAACTTCCAAG--------------CCTAGGTTTCAAATTGAAAGGCCAAAATAGCTCGAGAAGGCTCCAGGTATTTTGGCTGGAAATAGTCTCCTGGC-TCTAAAGAACCCCTGTGAGTTCT-----TCTACAGGAAAATCAAAGGCTCTTG-TG-TGTGAGCTCC--AGCCATCTAAAATATTGAAGGTCTCAAAGAGATAACAAATTCACTCTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28209419 245 -  71996105 CCAACCCTGAGGATGGAGAAAGAGTGATTACAGAGTCTTCCTTAGAACTTAGAAACTTCCAAG--------------CTTGGGTTTCAAATTGAGAGGTCAAAATGGCTCGAAAGGGCTCCAGGTATTTTGGCTGGAAATAGTCTCCTGGC-TCTAAAGAACCCCTGTGAGTTCT-----TCTACAGGAAAATCAAAGGCTCTTG-GG-TGTGATCTCC--AGTCATCTAAAATATTGAAGGTCTCAAAGAGATAACAAATTCACTCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1871212 246 +   2316924 CCAACCATGAGGATGGAGAAAGAGTGATTACAGTGTCTTCCTTAGAGCTTAGAAACTTCCAAG--------------CCTAGGTTTCAAATTGAAAGGGCAAAATAGCTCGAGAGGGCTCCAGGTATTTTGGCTGGAAATAGTCTCCTGGC-TCTAAAGAACCCCTGTGAGTTCT-----TCTACAGGAAAATCAAAGGCTCTTGTGG-TGTGAGCTCC--AGCCATCTAAAATATTGAAGGTCTCAAAGAGATAACAAATTCACTCTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1745819 244 -   3067355 CCAACCCTGAGGATGGAGAAAGAGTGATTACAGTGTCTTCCTTAGAGCTTAGAAACTTCCAAG--------------CCAGGGTTTCAAATTGAAAGGCCAAAATAGCTCGAGAGGGCTCCGGGTATTTTGGCTGGAAATAGTCTTCTGGC-TCTAAAGAACCCCTGTGAGTTCT-----TCTACAGGAAAATCAAAGGCTCTTA-TG-TGTGACCTCC--AGTCATCTAAAATATTGAAGGTCTCAAAGAGACAACAAATTCAC-CTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171323849 245 - 171630274 CCAACCCTGAGGGTGGAGAGAGAATGATTATAGTGTCTTCCTTAGGGCTTAGAAACTTCCAAG--------------CCTGGGTTTCAAATGGAAAGGCCAAAATAGCTTGAGAGGGCTCCAGGTATTTTGGTGCGAAAGAGTCTCCTGGC-TCAAAAGAACTCCTGTGAGTTCT-----TCCACAGGAAAATCAAAGGCACTTG-TG-TGTGACCTCC--AGTCACCTAAAACACTGAAGGTCTCAAAGAGATAAGAAAACAATCCTC
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            153952 245 -    375362 CCAACCCTGAGGGTGGAGAGAGAAGGATTATAGTGTCTTCCTTAGGGCTTAGAAACTTCCAAG--------------CCTGGGTTTCAAATGGAAAGGCCAAAATAGCTTGAGAGGGCTCCAGGCATTTTGGCTTGAAAGCGTCTCCTGGC-TCAAAACAACTCCTGTGAGTTCT-----TCTACAGGAAAATCAAAGGCACTTG-TG-TGTGAGCTCC--AGTCACCTAAAACACTAAAAGTCTCAAAGAGATAATAAAACAACCCTC
i saiBol1.JH378348         C 0 I 1
s cebCap1.NW_016108108v1      155075 242 -    373274 CCAACCCGGAGGGTGGAGAGAGAATGATTATAGTGTCTTCCTTAGGGCTTAGAAACTTCCAAG--------------CCTGGGTTTCAAATGGAAAGGCCAAAATAGCTTGAGAGGGCTCCAGGTATTTTGGCTCGA----GTCTCCTGGC-TCAAAAGAACTCCTCTGAGTTAT-----TCTACAGGAAAATCAAAAGCACTTG-TGTTGTGACCTCC--AGTCACCTAAAACACTGAAGTTCTCAAAGAGGTAATAAAACAACCCTC
i cebCap1.NW_016108108v1   I 4248 I 29
s aotNan1.NW_018494050v1       92678 245 -    285216 CCAACCCTGAGGGTGGAGAGAGAATGATTATAGTGTCTTCCTTAGGGCTTAGAAACTTCCAAG--------------CCTGGGTTTCAAATGGAAAGGCCAAAATAGCTTGAGAGGGCTCCAGGTATTTTGGCTCAAAAGAGTCTCCTGGC-TCAAAAGAACTCCTGTGAGTTCT-----TCTACAGGAAAATCAAAGGCACTTG-TG-TGTGACCTCC--AGTCACCTAAAACACTGAAGGTCTCAAAGAGATAATGAAACAACCCTC
i aotNan1.NW_018494050v1   T 10486 I 1
s otoGar3.GL873742           1478130 233 -   2232465 CCAGTAGTCA-GATGAAAAAAGAATGATTCTAGCGTCTGGAATAGAGCTTGAAAACTTCTGAG--------------TCTGGATTTCAAGTTGAGAGAGCCAAATAACTTGACATAATCCCAGGTATTTTGGTTGGAAAGCATTTCCTGGTGTCTA--------TTGTGATTTCCTGGTGTCCACAGACAAATCAAGGGCTCTTT-TG-TGTGACCTCCAAAGTTGTCTAAAATATTGATGATATCAAAA-----------CCACTGCC
i otoGar3.GL873742         C 0 C 0

a score=193897.000000
s hg38.chr6_GL000254v2_alt     53389 27 +   4827813 A-TCCTGAT-GTAATGCAAAT----ACG----TCACT
s panTro5.chr6              29024251 27 + 175400573 A-TCCTGAT-GTAATGCAAAT----ACG----TCACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29267815 27 + 173848474 A-TCCTGAT-GTAATGCAAAT----ACG----TCACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5067015 27 +   6154872 A-TCCTGAT-GTAATGCAAAT----ACG----TCACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74089196 32 + 122973662 ACCCCTGAC-GTAAGGCAAATATAAACC----TTACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29202200 32 + 172585720 ACCCCTGAT-GTAAGGCAAATATAAACC----TCACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28890693 32 - 170955103 ACCCCTGAT-GTAAGGCAAATATAAACC----TCACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1862785 32 -   2996164 ACCCCTGAT-GTAAGGCAAATATAAACC----TCACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1756668 32 -   2157725 ACCCCTGAT-GTAAGGCAAATATAAACC----TCACT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28209664 32 -  71996105 ACCCCTGAT-GTAAGGCAAATATAAACC----TCACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1871458 32 +   2316924 ACCCCTGAT-GTAAGGCAAATATAAACC----TCACT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1746063 32 -   3067355 ATCCCTGAT-GTAAGGCAAATATAAACC----TCACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171324095 27 - 171630274 -CCCCTGAT-GTAAGGCAAATATAAATC----T----
i calJac3.chr4             I 1 I 4
s saiBol1.JH378348            154198 27 -    375362 -CCCCTGAT-GTAAGGCAAATACAAATC----T----
i saiBol1.JH378348         I 1 I 4
s aotNan1.NW_018494050v1       92924 27 -    285216 -CCCCTGAT-GTAAGGCAAATATAAATC----T----
i aotNan1.NW_018494050v1   I 1 I 4
s otoGar3.GL873742           1478363 37 -   2232465 ATTCCTGATAGTAAGGCAAATACAGACCCTGGTCACT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      155317 29 -    373274 I

a score=6168713.000000
s hg38.chr6_GL000254v2_alt     53416 621 +   4827813 GGCTTTCCTACGTGGTTTGAG--TTTTTTATTGAAAATAGGCAGGGAACCCCGGGAGCAACTCTTTCTCCTTAGCAAGCATCTGGCCCTG--AACTCCTTCTGAAACTTCTAGAGcagtgcttctcaaactttagcatcagagtcacttgagggcttattc-aacacaggtggctgggtcccactctcatcaattctgattctgtagatctgaggttgggcctggaatttgacattccACTAGTAGCACCCTAATCCCT-CATGCCTTGCTCTCCTGTGCAGCATCCTTTGTGGCAAAC--ATGACACTATTTCCTTAAAGTGCCTGGAGAGAACCAGTAGATAGTA-GGGGG-GAA--ATATTAAGAAATGAAAAGAAAATATATGGCATCTCTTCGTTACCTGTCTCCAAAA--AATGCATCTTGAAACAAACATATGATTGGCC-----TGGGG---------GCACACAGCCAATCCTCAGCTAAGCAGGTTTCACCAGACAGTATCCCTCCTGGATACTGGTTATGGATATTTTCACCGGATAAAAGAATCAAGAAGTGAGGACATCCCAGCCTGAT--AGAGTGTTAGACTGGTGGATGGTG-ACAAACATCATACTCTGTTGCCTCTCAAAGATGCTTTGATTCA------
s panTro5.chr6              29024278 623 + 175400573 GGCTTTCCTACGTGGTTTGAG--TTTTTTATTGAAAATAGGCAGGGAACCCCGGGAGCAACTCTTTCTCCTTAGTAAGCATCTGGCCCTGGGACCTCCTTCTGAAACTTCTAGAGcagtgcttctcaaactttagcatcagagtcacttgagggcttattc-aacacaggcggctggatcccactctcatcaattctgattctgtagatctgaggttgggcctggaatttgacattccACTAGTAGCACCCTAATCCCT-CATGCCTTGCTCTCCTGTGCAGCATCCTTTGTGGCAAAC--ATGACACTATTTCCTTAAAGTGCCTGGAGAGAACCAGTAGATAGTA-GGGGG-GAA--AAATTAAGAAATGAAAAGAAAATATATGGCATCTCTTCGTTACCTGTCTCCAAAA--AATGCATCTTAAAACAAATATATGATTGGCC-----TGGGG---------GCACACAGCCAATCCTCAGCTAAGCAGGTTTCACCAGACAGTATCCCTCCTGGATACTGGTTATGGATATTTTCACCGGATAAAAGAATCAAGAAATAAGGACATCCCAGCCTGAT--AGAGTGTTAGACTGGTGGATGGTG-ACAAACATCATACTCTGTTGCCTCTCAAAGATGCTTTGATTCA------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29267842 623 + 173848474 GGCTTTCCTACGTGGTTTGAG--TTTTTTATTGAAAATAGGCAGGGAACCCCGGGAGCAACTCTTTCTCCTTAGTAAGCATCTGGCCCTGGGACCTCCTTCTGAAACTTCTAGAGcagtgcttctcaaactttagcatcagagtcacttgagggcttattc-aacacaggcggctggatcccactctcatcaattctgattctgtagatctgaggttgggcctggaatttgacattccACTAGTAGCACCCTAATCCCT-CATGCCTTGCTCTCCTGTGCAGCATCCTTTGTGGCAAAC--ATGACACTATTTCCTTAAAGTGCCTGGAGAGAACCAGTAGATAGTA-GGGGG-GAA--AAATTAAGAAATGAAAAGAAAATATATGGCATCTCTTCGTTACCTGTCTCCAAAA--AATGCATCTTAAAACAAACATATGATTGGCC-----TGGGG---------GCACACAGCCAATCCTCAGCTAAGCAGGTTTCACCAGACAGTATCCCTCCTGGATACTGGTTATGGATATTTTCACCGGATAAAAGAATCAAGAAATAAGGACATCCCAGCCTGAT--AGAGTGTTAGACTGGTGGATGGTG-ACAAACATCATACTCTGTTGCCTCTCAAAGATGCTTTGATTCA------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5067042 624 +   6154872 GGCTTTCCTACGTGGTTTGAG--TTTTTTATTGAAAATAGGCAGGGAACCCCGGGAGCAACTCTTTCTCCTTAGCAAGCATCTGGCCCTGGGACCTCCTTCTGAAACTTCTAGAGcagtgcttctcaaactttagcatcagagtcacttgagggcttattc-aacacaggcggctgggccccactctcatcaattctgattctgtagatctgaggttgggcctggaatttgacattccATTAGCAGCACCCTAATCCCT-CACCCCTTGCTCTCCTGTGCAGCATCCTTTGTGGCAAAC--ATGACACTATTTCCTTAAAGTGCCTGGAGAGAACCAGTAGATAGTA-GGGGGAAAA--AAATTAAGAAATGAAAAGAAAATATATGGCATCTCTTCGTTACCTGTCTCCAAAA--AATGCACCTTAAAACAAACATATGATTGGCC-----TGGGG---------GCACACAGCCAATCCTCAGCTAAGCAGGTTTCACGAGACAGTATCCCTCCTGGATACTGGTTACGGATATTTTCACCGGATAAAAGAATCAAGAAATAAGGACATCCCAGCCTGAT--AGAGTGTTAGACTGGTGGATGGTG-ACAAACATCATACTCTGTTGCCTCTCAAAGATGCTTTGATTCA------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74089228 623 + 122973662 GGCTTTCCTACGTGGTTTGAG--TTTTTTATTGAAAATAGGTAGGGAACCCTGGGAGCAACTCTTTCTCCTTAGCAAGCATCTGGCCCTGGGACCTCCTTCTGAAACTTCTAGGGcagtgcttctcaaactttagcatcagagtcacttgagggcttattc-gacccaggcggctgggccccgctctcatcatttctgattctgtagatctgaggttgggcctggaatttggcattcctCTGGTAGCACCCTAATCCCT-CACCCCTTGCTCTCCTGTGCAGCATCCTTTGTGGCAAAC--ATGACACTGTTTCCGTAAAGTGCCTGGAGAGAACCAGTAGGTAGCA-GGGGG-GAA--AAAATAAGAAATGAAAAGAAAATATATGGCATGTCTTCATTACCTGTCTCCAAAA--AATGCATCTTTAAACAAACATATGATTGGCC-----TGGGG---------GCACACAGCCAATCCTCAGCTAAGCAGGTTTCACCAGACAGTATCCCTCCTGGATACTGCTTATGGATATTTTCACCGTATAAAAGAATCAAGAAGTAAGGACATCCTAGCCTGAT--AGAGTGTTAGACTTGTGGATGGTG-ACAAACATCATACTCTGTTGCCTCTCAAAGATGCTTTGATTCA------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29202232 622 + 172585720 GGCTTTCCTAGGTGGTCCGAG-TTTTTCTATTGAAAATAGGCAGGGAACCCTGGGAGCAACTCTTTCTCCTTAGCCAACATCTGGCCCTGGGACCTCCTTCTGAAACTTCTAGAGcagtgcttctcaaactttagcatcagagtcacttgagggcttatcc-aacaggggcagctgggccccattcttatcaattctgattctgtagatctgaggttgggcctggaatttggcattccACTGGTAGCACCCTAATCCTT-CACCCCTTGCTCTCCTGTGCAGCATCATTTGTGGCAAAC--ATGACACTGTTTCCTTCAAGTGCCTCGAGAGAACCAGTAGCTAGCA-GGGGG-GGA--AAAGCAAGAAATGAAAAGAAAATATATGGCATGTCTTCATTACC--TCTTCAAAA--AATGCATCTTAAAACAAACATATGATTGGCC-----TGGGG---------ACACACAGCCAATCCTCAGCTAAACAGGTTTCACAAGACAGTATCCCTCCTGGAAGCTGGTTATGGATATTTTTACCGGATAAAAGAATCAAGAAGTAAGGACATCCCAGCCTGAT--AGAGTGTTAGACTGGTGGATGGTG-ACAAACATCATACTCTGTTGCCTCTCAAAGATGCTTTGATTCA------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28890725 622 - 170955103 GGCTTTCCTAGGTGGTCCGAG-TTTTTCTATTGAAAATAGGCAGGGAACCCTGGGAGCAACTCTTTCTCCTTAGCCAACATCTGGCCCTGGGACCTCCTTCTGAAACTTCTAGAGcagtgcttctcaaactttagcatcagagtcacttgagggcttatcc-aacacgggcagctgggccccattcttatcaattctgattctgtagatctgaggttgggcctggaatttggcattccACTGGTAGCACCCTAATCCTT-CACCCCTTGCTCTCCTGTGCAGCATCATTTGTGGCAAAC--ATGACACTGTTTCCTTCAAGTGCCTCGAGAGAACCAGTAGCTAGCA-GGGGG-GGA--AAAGCAAGAAATGAAAAGAAAATATATGGCATGTCTTCATTACC--TCTTCAAAA--AATGCATCTTAAAACAAACATATGATTGGCC-----TGGGG---------ACACACAGTCAATCCTCAGCTAAACAGGTTTCACAAGACAGTATCCCTCCTGGAAGCTGGTTATGGATATTTTTACCGGATAAAAGAATCAAGAAGTAAGGACATCCCAGCCTGAT--AGAGTGTTAGACTGGTGGATGGTG-ACAAACATCATACTCTGTTGCCTCTCAAAGATGCTTTGATTCA------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1862817 618 -   2996164 GGCTTTCCTAGGTGGTCCGAGTTTTTTTTATTGAAAATAGGCAGGGAACCCTGGGAGCAACTCTTTCTCCTTAGCCAACATCTGGCCCTGGGACCTCCTTCTGAAACTTCTAGAGcagtgcttctcaaactttagcatcagagtcacttgagggcttatcc-aacacgggcagctgggccccattcttatcaattctgattctgtagatctgaggttgggcctggaatttggcattccACTGGTAGCACCCTAATCCTT-CACCCCTTGCTCTCCTGTGCAGCATCCTTTGTGGCAAAC--ATGACACTGTTTCCTTCAAGTGCCTCGAGAGAACCAGTAGCTAGCA-GGGGG-GAA--AAAGCAAGAAATGAAAAGAAAATATATGGCATGTCTTCATTACC--TCTTCAAAA--AATGCATCTT-----AAACATATGATTGGCC-----TGGGG---------ACACACAGCCAATCCTCAGCTAAACAGGTTTCACAAGACAGTATCCCTCCTGGAAGCTGGTTATGGATATTTTTACCGGATAAAAGAATCAAGAAGTAAGGACATCCCAGCCTGAT--AGAGTGTTAGACTGGTGGATGGTG-ACAAACATCATACTCTGTTGCCTCTCAAAGATGCTTTGATTCA------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1756700 622 -   2157725 GGCTTTCCTAGGTGGTCCGAGTTTTTTTTATTGAAAATAGGCAGGGAACCCC-GGAGCAACTCTTTCTCCTTAGCAAACATCTGGCCCTGGGACCTCCTTCTGAAACTTCTAGAGcagtgcttctcaaactttagcatcagagtcacttgagggcttatcc-aacacgggcagctgggccccactcttatcaattctgattctgtagatctgaggttgggcctggaatttggcattccACTGGTAGCACCCTAATCCTT-CACCCCTTGCTCTCCTGTGCAGCATCCTTTGT-GCAAAC--ATGACACTGTTTCCTTAAAGTGCCTCGAGAGAACCAGTAGATAGCAGGGGGG-GGA--AAAGCAAGAAATGAAAAGAAAATATATGGCATGTCTTCATTACC--TCTTCAAAA--AATGCATCTTAAAACAAACATAAGATTGGCC-----TGGGG---------ACACACAGCCAATCCTCAGCTAAACAGGTTTCACAAGACAGTATCCCTCCTGGAAGCTGGTTATGGATATTTTTACCGGATAAAAGAATCAAGAAGTAAGGACATCCCAGCCTGAT--AGAGTGTTAGACTGGTGGATGGTG-ACAAACATCATACTCTGTTGCCTCTCAAAGATGCTTTGATTCA------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28209696 622 -  71996105 GGCTTTCCTAGATGGTCCGAG-TTTTTTTATTGAAAATAGGCAGGGAACCCCGGGAGCAACTCTTTCTCCCTAGCAAACATCTGGCCCTGGGACCTCCTTCTAAAATTTCTAGAGcagtgcttctcaaactttagcatcagagtcacttgagggcttatcc-aacacgggcagctgggccccactcttatcaattctgattctgtagatctgaggttgggcctggaatttggcattccACTGGTAGCGCCCTAATCCCT-CACCCCTTGCTCTCCTGTGCAGCATCCTTTGTGGCAAAC--ATGACACTGTTTCCTTAAAGTGCCTCGAGAGAACCAGTAGATAGCA-GGGGG-GAA--AAAACAAGAAATGAAAAGAAAATATATGGCATGTCTTCATTACC--TCTTCAAAA--AATGCATCTTAAAACAAACATATGATTGGCC-----TGGGG---------GCACACAGGCAATCCTGAGCTAAGCAGGTTTCACAAGACAGTATCCCTCCTGGAAGCTGGTTATGGATATTTTTACTGGATAAAAGAATCAAGAAGTAAGGACATCCCAGCCTGAT--AGAGTGTTAGACTGGTGGATGGTG-ACAAACATCATACTCTGTTGCCTCTCAAAGATGCTTTGATTCA------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1871490 622 +   2316924 GGCTTTCCTAGGTGGTCCGAGTTTTTTTTATTGAAAATAGGCAGGGAACCCCGGGAGCAACTCTTTCTCCTTAGCAAACATCTGGCCCTGGGACCTCCTTCTGAAACTTCTAGAGcagtgcttctcaaactttagcatcagagtcacttgagggcttatcc-aacacgggcagctgggccccactcttatcaattctgattctgtagatctgaggttgggcctggaatttggcattccACTGGTAGCACCCTAATCCTT-CACCCCTTGCTCTCCTGTGCAGCATCCTTTGT-GCAAAC--ATGACACTGTTTCCTTAAAGTGCCTCGAGAGAACCAGTAGATAGCA-GGGGG-GAA--AAAGCAAGAAATGAAAAGAAAATATATGGCATGTCTTCATTACC--TCTTCAAAA--AATGCATCTTAAAACAAACATATGATTGGCC-----TGGGG---------ACACACAGCCAATCCTCAGCTAAACAGGTTTCACAAGACAGTATCCCTCCTGGAAGCTGGTTATGGATATTTTTACCGGATAAAAGAATCAAGAAGTAAGGACATCCCAGCCTGAT--AGAGTGTTAGACTGGTGGATGGTG-ACAAACATCATACTCTGTTGCCTCTCAAAGATGCTTTGATTCA------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1746095 620 -   3067355 GGCTTTCCTATGTGGTCTGAG--TTTTTTATTGAAAATAGGCAGGGAACCCCGGGAGCAACTCTTTCTCCTTAGCAAACATCTGGCCCTGGGACCTCCTTCTGAAACTTCTAGAGcagtgcttctcaaactttagcatcagagtcacttgagggtttatcc-aacaaaggcagctgggccccactcttatcaattctgattctgtagatctgaggttgggcctggaatttggcattccACTGGTAGCACCCTAATCCCT-CACCCCTTGCTCTCCTGTGCAGCATCCTTTGTGGCAAAC--ATGACACTGTTTCCTTCAAGTGCCTCGAGAGAACCAGTAGATAGCA--GGGG-GGA--AAAGCAAGAAATGAAAAGAAAATATATGGCATGTCTTCATTACC--TCTCCAGAA--AATGCATCTTAAAACAAACATATGATTGGTC-----TGGGG---------GCACACAGCCAATCCTCAGCTAAGTAGGTTTCACAAGACAGTATCCCTCCTGGAAGCTGGTTATGGATATTTTTACCGGATAAAAGAATCAAGAAGTAAGGACATCCCAGCCTGAT--AGAGTGTTAGACTGGTGGATGGTG-ACAAACATCATACTCTGTTGCCTCTCAAAGATGCTTTGATTCA------
i colAng1.NW_012115566v1   C 0 T 5582
s calJac3.chr4             171324126 628 - 171630274 GGCTTTCCTAGGTGGTTCGAG--CTTTTTATTGAGAATAGTCAGGGAACCCCAGGAGCAGCTCTTCCTCCTCAGCAGGTGCCTGGCTCTGGGACCTATTTCTGAACCCTCTAGATcagtgctctc--aactttagcatcagagtcacttgagggcttattcaaacacaggtggctgggccccaccctcagcaattctgactccatagatctgcggtggggcctggaatttggcattcccaTGGTAGCACCCTAATCCCT-CACCCCTTGCTC------------TCCACTGTGACTAAC--ATGCCATTATGTGCTTAAAGTCTCTAGAGAGGACCAGTGGGTAGAA-GGGGG-AGAAATAAGTACGAAACGACAAGAAAATACGTGGCATGTCTGCCTTACCTTCCAGCAAAAACAATATATTTTATAACAAACATGTGATTGGCCGGCGGCGGGGGGAGGGGGAGCGCACAGGAAATCCTCAGCTAAGCAGGTTTCACCAGACAATACCCCTCCTGGACGCTGGTTATGGATATTTTCACTGGACAAAAGAATCAAGAAGTAAGGACATCCCAGCCTGAT--ACAGTGTTAGACGGGAGGATGGTG-ACAGACATCACACTCTGCGGCCTCTCGCAGATGCTTTGATCCA------
i calJac3.chr4             I 4 C 0
s saiBol1.JH378348            154229 596 -    375362 GGCTTTCCTGGGTGGTTTGAG--CTTTTTATTGAGAATAGTCAGAGAACCCC----------------------------CCTGGCCCTGGGACCTCCTTCTGTAACCTGTAGATcagtgctctc--aacttgagcatcagagtcacttgagggcttattcaaacacaggtggctgggccccacccccagcaa-tctgactccacagatctgaggcggggcctggaaattggcattcccaTGGTAACACCCTCATCCCT-CACCCCTTGCTCTCCTGTGCAGCATCCATGGTGGCTAAC--ATGACACTGTTTCCTTAAAGTGCCTGAAGAGAATGAGTGGCTAGAA-GCGGG-GAA---AAGGAAGAAATGAAAAGAAAATACATGACATGTCTACATTACCTCCCTCCAGAA--AATGCATCTTAAAACAAAC--GTGATTGGCCGGGGGTGGGGG--------GCGCACAGGAAATCCTCAGCTAAGCTGGTTTCACCAGACAATATCCCTCCTGGATGCTGGTTATGGATATTTTCACTGGACAAAAGAATCAAGAAGTAAGGACATCCCAGCCTGAC--AGAGTGTTAGACGGGTGGATGGTG-ACAGACATCATACTCTGTTGCCTCTCAAAGATGCTTTGATTCA------
i saiBol1.JH378348         I 4 C 0
s cebCap1.NW_016108108v1      155346 623 -    373274 GGCTTCCCTGGGTGGTTTGAG--CTTTCTATTGAGAATAGTCAGGGAACCCCAGGAGCAGCTCTTCCTCCTCAGCAGGTGCCCGGCCCTGGGACCCCCTTCTGAAACCTCTAGATcagtgctctc--aacttgagcatcagagtcacttgagggcttattcaaacacaggtggctgggctccaccctcagcaattctgactccacagatccgaggtggggcctggaatttggcattCGCATGGTAGCACCCTAATCCCT-CACCCCTTGCTCTCCTGTGCAGCATCCATGGTGGCTAAC--ATGACACTGTTTCCTTAAAGTGCCTCAAGAGAATGAGTGGATAGAA-GGGGG-GAA---CAGGAAGAAATGAAAAGAAAATATATGGCACGTCTACATTCCCTCTCTCCAAAA--AATGCATCTTAAAACAAACATATGATTGGCC--TGGCGGG----------GCGCACAGGAAATCCTCCTCTAAGCTGGTTTCACCAGACAATATCCCTACTGGACGCTGGTTATGGATATTTGCACTGGACAAACGAATCAAGAAGTAAGGACATCCCAGCCTGAC--AGGGTGTTAGACGGGTGGATGGTG-ACAGACATCATACTCTGTTGCCTCTCAAAGATGCTTTGATTCA------
i cebCap1.NW_016108108v1   I 29 C 0
s aotNan1.NW_018494050v1       92955 623 -    285216 GGCTTTCCTAGGTGGTTTGAG--CTTTTCACTGAGAATAGTCAGGGAACCCCAGGAGCAGCTCTTCCTCCTCAGCAGGTGCCTGGCCCTGGGACCTCCTTCTGAAACCTCTAGATcagtgctctc--agtttcagcatcacagtcacttgagggtttattcaaacacaggtggctgggccccaccctcagcaattctgactccatagatctgaggtggggcctggaatttggcattcccaTGGTAGCACCCTAATCCAT-CACCCCTTGCTCTCCTGTGCAGCATCCATGGTGGCTAACATATGACACTGTTTCCTTAAAGTGCCTGAAGAGAATGAGTGGATAGAA-GGGGG-AAA----ACGAAGAAATGAAAAGAAAATATATGGCATGTCTGCAGTACCTCCCTCCAAAA--AATGCATCTTAAAACAAACATATGATTGGCC-----TGGGGG--------GCGCATGGGAAATCCTCAGCTAAGCTGGTTTCACCCGACAATATCCCTCCTGGATGCTGGTTATGGATATTTTCACTGGACAAAAGAATCAAGAAGTAAGGACATCCCAGCCTGAT--AGAGTGTTAGACGGGTGGATGGTG-GCAGACATCACACTCTGTTGCCTCTCAAAGATGCTTTGATTCA------
i aotNan1.NW_018494050v1   I 4 C 0
s otoGar3.GL873742           1478400 606 -   2232465 ---TCCTTTTGGCACTTTGAG--TCCTTGGCTAAGAATGGGCAAGGAAGCCCTGGAGCAACTCTTCCTTCTCAACACACACCTGGAGCTGAG--CATATCCTGAAACT--TAGACcagtgcttctcaaaccttagcataagcatcacttgagggtgtattaaaatacaggtctctgggctctaccctcataggttctgattcagtagat-taaagttgggtctggaatttggcatttTGCTCACAGTACCCTAATCTCTCCATTCCTTACTTTCCTGTGCAGTGTCCACTCTGGCTAAC--ATGCCACTGTTTGTTTAAAGTGCCTGAAGAGAACAAGTGGataatt-------taa--aaat---------------atatatatGGAATGCTTGCATTACTTTCCTCCAAAAAAAATGCATCCTGAAACAAATTTATAATTGCCC-----TCAAG---------GCACACAGCCAATCCTCAGCTAATTGGATTTCATCAGTTATGATCTCTCCTGAATGCCTTTTGTGGATATTTTCACTAGACAAGGGAATCAAGAAATAAGGACAATCCAGCCTGATAAAGAGTGTTAGGCTGGAGGATTGCGAATAACCACTGTTTTGTGTTACCTCCGGAAGA--CATCAGTTTAATGGCA
i otoGar3.GL873742         C 0 C 0

a score=835015.000000
s hg38.chr6_GL000254v2_alt     54037 89 +   4827813 ACAGCAAAC--ATGTACAGAGGACAGCAATTTtgaaac-atacaacattggaaacccctaaaaggtatcatcagtgaat-aggatttcctgg-g
s panTro5.chr6              29024901 89 + 175400573 ACAGCAAAC--ATGTACAGAGGACAGCAATTTtgaaac-atacaacattggaaacccctaaaaggtatcatcagtgaat-aggatttcctgg-g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29268465 89 + 173848474 ACAGCAAAC--ATGTACAGAGGACAGCAATTTtgaaac-atacaacattggaaacccctaaaaggtatcatcagtgaat-aggatttcctgg-g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5067666 89 +   6154872 ACAGCAAAC--ATGTACAGAGGACAGCAATTTtgaaac-atacaacattggaaacccctaaaaggtatcatcagtgaat-aggatttcctgg-g
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74089851 89 + 122973662 ACAGCAAAC--ATGTACAGAGGACAGCAATTTtgaaac-atacagcattggaaacccctaaaagatatcatcagtggat-aggatttcctgg-g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29202854 91 + 172585720 ACAGCAAACCTACACACAGAGTACAGCAATTTtgaaac-atacagcattggaaacccctaaaaggtatcatcagtggac-aggatttcctgg-g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28891347 91 - 170955103 ACAGCAAACCTACACACAGAGTACAGCAATTTTGAAAC-ATACAGCATTGGAAACCCCTAAAAGGTATCATCAGTGGAC-AGGATTTCCTGG-G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1863435 91 -   2996164 ACAGCAAACCTACACACAGAGTACAGCAATTTtgaaac-atacagcattggaaacccctaaaaggtatcatcagtggac-aggatttcctgg-g
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1757322 90 -   2157725 ACAGCAAACCTACACACAGAGTACAGCAATTTtgaaac-atacagcattggaaacccctaaaaggtatcatcagtggac-a-gatttcctgg-g
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28210318 87 -  71996105 ACAGCAAACCTACACACAGAGTACAGCAATTTTGGAAC-ATACAGCATTGGAAACCCCTAAAAGGTATCATTAGTGGAC-AA----TCCTGG-A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1872112 91 +   2316924 ACAGCAAACCTACACACAGAGTACAACAATTTTGAAAC-ATACAGCATTGGAAACCCCTAAAAGGTATCATCAGTGGAC-AGGATTTCCTGG-G
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1741133 91 -   3067355 ACAGCAAACCTATACACAGAGGACAGCAATTTtgaaac-atacagcattggaaacctctgaaaggtatcatcagtggat-aggatttcctgg-g
i colAng1.NW_012115566v1   T 5582 C 0
s calJac3.chr4             171324754 88 - 171630274 ACAGCAAGCGTGCACGCAGAGGGCAGCCGTTTTGAAAC---ACAGCATTGGAAACCCCCAGAAGGTGCCGTCAGTGGAC-AGGATTTCCTGG--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            154825 91 -    375362 ACAGCAAGCATGCACACAGAGGACAGCAGTTTtgaaac-atacagcgttggaaacccctaaaaggtgccatcagtgaat-agaatttcgttgg-
i saiBol1.JH378348         C 0 I 223
s cebCap1.NW_016108108v1      155969 90 -    373274 ACAGCAGGCATGCACACAGAGGACAGTAGTTTtgaaac-atacagcgttggaaacccctaaaaggtgccatcagtggat-aggatttcctgg--
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       93578 90 -    285216 ACAGCAAGCATGCACACAGAGGGCAGCAGTTTtgaaac-atacagcactggacacccctaaaaggtgccatcagtggat-aggatttcctgg--
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479006 93 -   2232465 AAAGCACGTATGTACATAGATAACAACAGTTTtgaaaccataaagcaatggaaatccttagaaatgctattcagtggatcagaaattcttag-c
i otoGar3.GL873742         C 0 C 0

a score=2773397.000000
s hg38.chr6_GL000254v2_alt     54126 329 +   4827813 agttccctggtcatgcaatgcaattgtgatgggattgacagag-aaagaac--aaaaaaaaTTT--GTTTTCTTTTGTTTTTACCTGAGGAAGTGCTCAACACACCTGCGATCCACTCACCTTTTACTTTGCGTCTATTTTCCATTGTGACAGAAAAACTTTTCCTACTTTTTCACAT--GAGTCCTCCGTTGGCTGTTAACAGAGGTTTCCAGGCAATGTTTTATTTTAACAAGGAAAATGGAATGGCTGAGGAAATACAGGAAAATGAATCAATTGT-------ATCAGTAGGGAATGT--TGATCCGTATTGGTTTCTGCTCCTCTCAT-------GTTGAAGGTCTCT
s panTro5.chr6              29024990 329 + 175400573 agttccctggtcatgcaatgcaattgtgatgggattgacagag-aaagaac--aaaaaaaaTTT--GTTTTCTTTTGTTTTTACCTGAGGAAGTGCTCAACACACCTGCGATCCACTCACCTTTTAATTTGCGTCTATTTTCCATTGTGACAGAAAAACTTTTCCTACTTTTTCACAT--GAGTCCTCCGTTGGCTGTTAACAGAGGTTTCCAGGCAATGTTTTATTTTAACAAGGAAAATGGAATGGCTGAGGAAATACAGGAAAATGAATCAATTGT-------ATCAGAAGGGAATGT--TGATCCGTATTGGTTTCTGCTCCTCTCAT-------GTTGAAGGCCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29268554 328 + 173848474 agttccctggtcatgcaatgcaattgtgatgggattgacagag-aaagaac---aaaaaaaTTT--GTTTTCTTTTGTTTTTACCTGAGGAAGTGCTCAACACACCTGCGATCCACTCACCTTTTAATTTGCGTCTATTTTCCATTGTGACAGAAAAACTTTTCCTACTTTTTCACAT--GAGTCCTCCGTTGGCTGTTAACAGAGGTTTCCAGGCAATGTTTTATTTTAACAAGGAAAATGGAATGGCTGAGGAAATACAGGAAAATGAATCAATTGT-------ATCAGAAGGGAATGT--TGATCCGTATTGGTTTCTGCTCCTCTCAT-------GTTGAAGGTCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5067755 330 +   6154872 agttccctggtcatgcaatgcaattgtgatgggattgacagag-aaagaac-aaaaaaaaATTT--GTTTTCTTTCGTTTTTACCTGAGGAAGTGCTCAACACACCTGCGATCCACTCATCTTTTACTTTGCTTCTATTTTCCATTGTGACAGAAAAACTTTTCCTACTTTTTCATAT--GAGTCCTCCGTTGGCTGTTAACAGAGGTTTCCAGGCAATGTTTTATTTTAAGAAGGAAAATGGAATGGCTGAGGAAATACAGGAAAATTAATCAATTGT-------ATCAGTAGGGAATGT--TGATCCGTATTGGTTTCTGCTCCTCGCAT-------GTTGAAGGTCTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74089940 330 + 122973662 agttccctggtcatgcaatgcagatgtgataggactgacagag-aaagaacaaaaaaaaAGTTT--GTTTTCTTTTGTTTTTACCTGAGGACGTGCTCAACACACCTGCGATCCACTCACCTTTTACTTTGCGTCTATTTTCCATTGCGACAGAAAAACTTTTCCTACTTTTTCATAT--GAGTCCTCCGTTGGCTGTTAACGGAGGTTTCCAGGCAATGTTTTATTTTAACGAGGAAAATGGAATGGCTGAGGAAATACAGGAAAATGAATCAATTGT-------ATCAGTAGGG-ATGT--TGATCCGTATCGGTTTCTGCTCCTCGCAT-------GTTGAAGGCCTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29202945 294 + 172585720 agttccctggtcatacaatgcagatgtgatgggaatgac-gag-aaagaac--aaaacaATTTT------------------------------------------TGCGATCCACTCATCTTTTACTCTGCGTCTATCTTCTATTGTGACAGAAAAACTTTTCCTACTTTTTCATAT--GAGTCCTCCGTTGACCGTTAACAGAGGTTTCCAGGCAATGTTTTATTTTAACGAGG-AAATGGAATTGCTGAAGAAATACAGGAAAATGAATCGATTGTATGGAATATCAGTACGGAATGT--TGATCCATATTGGTTTCTGCTCCTAGCAT-------GTGGAAGGCCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28891438 294 - 170955103 AGTTCCCTGGTCATACAATGCAGATGTGATGGGAATGAC-GAG-AAAGAAC--AAAACAATTTT------------------------------------------TGCGATCCACTCATCTTTTACTCTGCGTCTATCTTCTATTGTGACAGAAAAACTTTTCCTACTTTTTCATAT--GAGTCCTCCGTTGACCGTTAACAGAGGTTTCCAGGCAATGTTTTATTTTAACGAGG-AAATGGAATTGCTGAAGAAATACAGGAAAATGAATCGATTGTATGGAATATCAGTACGGAATGT--TGATCCATATTGGTTTCTGCTCCTAGCAT-------GTGGAAGGCCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1863526 294 -   2996164 agttccctggtcatacaatgcagatgtgatgggaatgac-gag-aaagaac--aaaacaATTTT------------------------------------------TGCGATCCACTCATCTTTTACTCTGCGTCTATCTTCTATTGTGACAGAAAAACTTTTCCTACTTTTTCATAT--GAGTCCTCCGTTGACCGTTAACAGAGGTTTCCAGGCAATGTTTTATTTTAACGAGG-AAATGGAATTGCTGAAGAAATACAGGAAAATGAATCGATTGTATGGAATATCAGTACGGAATGT--TGATCCATATTGGTTTCTGCTCCTAGCAT-------GTGGAAGGCCTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1757412 335 -   2157725 agttccctggtcatacaatgcagatgtgatgggaatgac-gag-aaagaac--aaaataATTTT-TGTTTTGTTTTGTTTTTACCTAAGGAAGTGCTCAACACATCTGCGATCCACTCATCTTTTACTCTGCATCTATCTTCTATTGTGACAGAAAAACTTTTCCTACTTTTTCATAT--GAGTCCTCCGTTGACCGTTAACAGAGGTTTCCAGGAAATGTTTTATTTTAACGAGG-AAATGGAATTGCTGAAGAAATACAGGAAAATGAATCAATTGTATGGAAAATCGGTACGGAATGT--TGATCCATATTGGTTTCTGCTCCTAGCAT-------GTGGAAGGCCTCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28210405 335 -  71996105 AGTTCCCTGGTCATACAATGTAGATGTGATGTGAATGAC-GAG-AAAGAAC--AAAACAATTTT-TGTTTTGTTTTGTTTTTACCTAAGGAAGTGCTCAACACATCTGCGATATACTCACCTTTTACTCTGCGTCTATTTTCTGTTGTGACAGAAAAACTTTTCCTACTTTTTCATAT--GAGTCCTCCGTTGGCCGTTAACAGAAGTTTCCAGGCAATGTTTTATTTTAACAAGG-AAATGGAATTGTTGAAGAAATACAGGAAAATGAATCAACTGTATGGAATATCAGTACGGAATGT--TGATCCATATTGGTTTCTGCTCCTAGCAT-------GTGGAAGGCCTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1872203 335 +   2316924 AGTTCCCTGGTCATACAATGCAGATGTGATGGGAATGAC-GAG-AAAGAAC--AAAATAATTTT-TGTTTTGTTTTGTTTTTACCTAAGGAAGTGCTCAACACATCTGCGATCCACTCATCTTTTACTCTGCATCTATCTTCTATTGTGACAGAAAAACTTTTCCTACTTTTTCATAT--GAGTCCTCCGTTGACCGTTAACAGAGGTTTCCAGGAAATGTTTTATTTTAACGAGG-AAATGGAATTGCTGAAGAAATACAGGAAAATGAATCAATTGTATGGAAAATCGGTACGGAATGT--TGATCCATATTGGTTTCTGCTCCTAGCAT-------GTGGAAGGCCTCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1741224 335 -   3067355 agttccctggtcatacaatgcagatgtgatgggattgat-gag-aaagaac--aaaaaaaTTTT-TGTTTTGTTTTGTTTTTACCTGAGGAAGTGCTCAACATATCTGCAATCCACTCACCTTTTACTCTGCGTCTATTTTCCACTGTGACAGAAAAACTTTTCCTACTTTTTCATGT--GAGTCCTCCGTTGGCCGTTAACAGAGGTTTCCAGGCAATGTTTTATTTTAACGAGG-AAATGGAATGGCTGAAGAAATACAGGAAAATGAATCAATTGTATGGAATATCAGTAGGGAATGT--TGATCCATATTGGTTTCTGCTCCTCGCAT-------GTGGAACGCTTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171324842 302 - 171630274 AGTTCCCCGGTCGCACAAAGCAGATGTGATGGGATTGACAGAGAAAAAAAC--GAAGGAAA---------TGTTTTGTTTTGACCTGAGGAAGTGCTCAGCCCACCTGCGACCCACTCACCTTTTACTTCGCATCTATTTTCCATTGTGACAGAAAACCTTTTCCTAGTTTTTCGTAT--GAG-----------------------GTTTCCAGGCAATGTTTCATTTTAAAGAGGAAAAT----TGGCTGAGGAAATACAGGAAAGTGAATCAACTGTATGGAATATCAGCAGGGAGCGT--TACTCCGTGTCGGTTTCTGCCTCTCGCAT-------GTCGAAGG-CTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            155139 315 -    375362 agttctctggtcgtacaaagcagatgtgatggtattgacggag-aaaaagc--aaagaaaaTGTTTGTTTTGTTTTGTTTTTACCTGAGAAAGTGCTCAGCCCACCTGCGATCCACTCACCTTTTACTTTGCGTCTACTTTCCACTGTGACAGAAAACCTTCTCCTAGTTTTTCATAT--GAG-----------------------GTTTCCGGGTAATGTTTTATTTTAACGAGGAAAATTGAATGGCTGAAGAAACACAGGAAAACGAATCAGTTGTATGGTATATCAGCAGGGCATGT--TACTCCGTGTCGGTTTCTGCCCCTTGCAC-------GTCGAAGGCCTCT
i saiBol1.JH378348         I 223 C 0
s cebCap1.NW_016108108v1      156059 315 -    373274 agttctctggtcgtacaaagcagatgtgatgggattgacagag-aaaaaac--aaagaaaaTGTTTGTTTTGTTTCGTTTTTGCCTGAGGAAGTGCTCAGCCCACCTGCGATCCACTCACCTCTTACTTTGCGTCTATTTTCCACTGTGACAGAAAACCTTTTCCTAGTTTTTCATAT--GAG-----------------------GTTTCCAGGGAATGTTTTATTTTAACGAGGAAAATTGAATGGCTGAGGAAATACAGGAAAATGAAGCAGTTGTATGGAATATCAGCAGGGCATGT--TACTCCGTGTTGGTTTCTGCCCCTCGCAT-------GTCGAAGGCCTCT
i cebCap1.NW_016108108v1   C 0 I 122
s aotNan1.NW_018494050v1       93668 311 -    285216 agttctctggtcgtacaaagcagatgtgatgggattgacagagaaaaaaac--aaataaaaTGTTTGCTTTGTTTTGTTTTTACCTGAGGACGTGCTCAGCCCACCTGCCATCCACTCACCTTTTACTTCGCATCTATTTTCCATTGTGACAGACAACCTTTTCCTAGATTTTCATAT--GAG-----------------------GTTTCCAGGCAATG-----TTTTAAAGAGGAAAATTGAATGGCTGAGGAAATACAGGAAAATGAATCAACTGTACGGAATATCAGTAGGGAATGT--GACTCCGTGTTGGTTTCTGCCCCTCGCAT-------GTCGAAGGCCTCT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479099 326 -   2232465 actttcct-gtcatacgaagcagatgtaatcagattgaatgag-aaagaac--agaggaaaTGT--ATGTTTGTTTGTTTT-ACGGAGGAAAGTGCCCTA-ACACCTGCTATTTACTCACCTTTTACTTTGCGGCCGTTTTCTACTGTGACAGAAAACTTTTTCTTGCTTCTTCATTTGGGAGGCCTAGGTTCGC-ATTAAAAGAGGTTTCCA---ATATTTTTATTTTAATGATGAAAATGAAGTGATTGAGGAAATA--------------AATCCTATAGAATATCAATTGATAATGTGCTGATCTGTATTTATCTCCTCTTTTAATACTTTCGTATTGGAAGTCCTCC
i otoGar3.GL873742         C 0 C 0

a score=55790.000000
s hg38.chr6_GL000254v2_alt     54455 7 +   4827813 TATTCCC
s panTro5.chr6              29025319 7 + 175400573 TATTCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29268882 7 + 173848474 TATTCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5068085 7 +   6154872 TATTCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74090270 7 + 122973662 AATTCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29203239 7 + 172585720 AATTCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28891732 7 - 170955103 AATTCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1863820 7 -   2996164 AATTCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1757747 7 -   2157725 AATTCCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28210740 7 -  71996105 AATTCCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1872538 7 +   2316924 AATTCCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1741559 7 -   3067355 AATTCCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171325144 7 - 171630274 GATTTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            155454 7 -    375362 GGTTCCC
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1       93979 7 -    285216 GATTCCC
i aotNan1.NW_018494050v1   C 0 I 9746
s otoGar3.GL873742           1479425 7 -   2232465 AGTTTCC
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      156374 122 -    373274 I

a score=1022085.000000
s hg38.chr6_GL000254v2_alt     54462 136 +   4827813 TGACAGTCTTTGTTCGGTCATCCAGCGTCCTTCCACTCCCATCTCAAGCGGCTGGAGAGCCACAGCAGTCCTTGTCTCAGTATTGGATTACACTTGTGGCTGTGCTTTCTGCGCAGGTTGAC-AGGGAGAGACTGGA
s panTro5.chr6              29025326 136 + 175400573 TGACAGTCTTTGTTCGGTCATCCAGCGTCCTTCCACTCCCATCTCAAGCGGCTGGAGAGCCACAGCAGTCCTTGTCTCAGTATTGCATTACACTTGTGGCTGTGCTTTCTGCGCAGGTTGAC-AGGGAGAGACTGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29268889 136 + 173848474 TGACAGTCTTTGTTCGGTCATCCAGCGTCCTTCCACTCCCATCTCAAGCGGCTGGAGAGCCACAGCAGTCCTTGTCTCAGTATTGGATTACACTTGTGGCTGTGCTTTCTGCGCAGGTTGAC-AGGGAGAGACTGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5068092 136 +   6154872 TGACAGTCTTTGTTCGGTCATCCAGCGTCCTTCCACTCCCATCTCAAGCGTCTGGAGAGCCACAGCAGTCCTTGTCTCAGTATTGGATTACACTTGTGGCTGTGCTTTCTGCGCAGGTTGAC-AGGGAGAGACTGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74090277 136 + 122973662 TGACAGTCTTTGTTCTGTCTTCCAGCGTCCTTCCACTCCCATCTCAAGCGGCTGGAGAGCCACAGCAGTCCTTCTCTCAGTATTGGATCACACTTGTGGCTGTGCTTTCTGCGTAGGTTGAC-AGGGAGAGACTGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29203246 136 + 172585720 CGACAGTCTTCGTTCGGTCATCCAGTATCCTTCCACTCCCAACTCAAGTGGCTGGAGAGCCACAGCAGTCCTTGTCTCAGTATTGGATCACACTTGTGGCTGTGCTCTCTGCACAGGTTGAC-AGGGAGAGACTGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28891739 136 - 170955103 CGACAGTCTTCGTTCGGTCATCCAGTATCCTTCCACTCCCAACTCAAGTGGCTGGAGAGCCACAGCAGTCCTTGTCTCAGTATTGGATCACACTTGTGGCTGTGCTCTCTGCACAGGTTGAC-AGGGAGAGACTGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1863827 136 -   2996164 CGACAGTCTTCGTTCGGTCATCCAGTATCCTTCCACTCCCAACTCAAGTGGCTGGAGAGCCACAGCAGTCCTTGTCTCAGTATTGGATCACACTTGTGGCTGTGCTCTCTGCACAGGTTGAC-AGGGAGAGACTGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1757754 136 -   2157725 CGACAGTCTTCATTCGGTCATCCAGTATCCTTCCACTCCCAACTCAAGCGGCTGGAGAGCCACAGCAGTCCTTGTCTCTGTATTGGATCACACTTGTGGCTGTGCTCTCTGCGCAGGTTTAC-AGGGAGAGACTGTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28210747 136 -  71996105 CGACAGTCTTCATTCGGTCATTCAGTATCCTTCCACTCCCACCTCAAGCGGCTGGAGAGCCACAGCAGTCGTTGTCTCAGTATTGGATCATACTTGTGGCTGTGCTCTCTGCGCAGGTTGAC-AGGGAGAGACTGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1872545 136 +   2316924 CGACAGTCTTCGTTCGGTCATCCAGTATCCTTCCACTCCCAACTCAAGCGGCTGGAGAGCCACAGCAGTCCTTGTCTCTGTATTGGATCACACTTGTGGCTGTGCTCTATGCGCAGGTTTAC-AGGGAGAGACTGCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1741566 136 -   3067355 CGACAGTCTTCGTTCGGTCATCCAGCATCCTTCCACTCCCATCTCAAGGGGCTGGAGAGCCACAGCAGTCCTTGTCTCAGTATTGGATCACACTTGTGGCTGTGCTCTCTGCGCAGGTTGAC-AGGGAGAGACTGTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171325151 115 - 171630274 CCGCAGTCTTCGGTCGGCTGCGCGGCGTCCT-CC-CCTCCATCTCCAGCGGCTGGAGAGCCGG-GCAGTCCCTGGCTTAGGACCGGATCGCACCTGCGGCTGCGCTGTCTGCGCAGGT-------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            155461 102 -    375362 CGGCAGTCTGCGGTC-GTTGTGC-GCGTCCTGCC-CCTCCATCTCCAGCGGCTGGAGAGCCGC-GCAGTCCCT------------GATCGCACCTGTGGCTGCGCTCTCTGCGCAGGT-------------------
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      103732 114 -    285216 CGGCAGTCTTCGTTCGGTTGTGCGGCGTCCTCCC-CTCCCATTTCCAGCGGCTGGAGAGCCAC-GCAGTCCCTGTCTCAGCACT-GATCGCACTTGTGTCTG-GCTCTCTGCGCAGAT-------------------
i aotNan1.NW_018494050v1   I 9746 C 0
s otoGar3.GL873742           1479432 133 -   2232465 CGAAAGATTTCGTTC--TTGTCCGGCCTCCTGCCACT--CATCTAAAACGACTCGCGATCCACAGCAGTCCTCCTCTCAGTATTGGATCAAACTTTGGGCTGCGCTCTCTGTTCAGGTCGACAAGGGAGAGACTGCT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      156374 122 -    373274 I

a score=623901.000000
s hg38.chr6_GL000254v2_alt     54598 54 +   4827813 GGAGAAATCAGTGGAC-AGATGCTTTCGCTCTGTTCTTTGGCCCAGaaaacaaaa
s panTro5.chr6              29025462 54 + 175400573 GGAGAAATCAGTGGAC-AGATGCTTTCGCTCTGTTCTTTGGCCCAGAAAACAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269025 54 + 173848474 GGAGAAATCAGTGGAC-AGATGCTTTCGCTCTGTTCTTTGGCCCAGAAAACAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5068228 54 +   6154872 GGAGAAATCAGTGGAC-AGATGCTTTCGCTCTGTTCTTTGGCCCAGAACACAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74090413 54 + 122973662 GGAGAAATCAGTAGAC-AGATGCTTTCGCCCTGTTCTTTGGCCCAGAAAACGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29203382 55 + 172585720 GGAGAAATCAGTGGATAAGATGCTTTCGCTCTGTTCTTTGGCCCAAAAAACAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28891875 55 - 170955103 GGAGAAATCAGTGGATAAGATGCTTTCGCTCTGTTCTTTGGCCCAAAAAACAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1863963 55 -   2996164 GGAGAAATCAGTGGATAAGATGCTTTCGCTCTGTTCTTTGGCCCAAAAAACAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1757890 54 -   2157725 GGAGAAATCAGTGGAT-AGATGCTTTCGCTCTATTCTTTGGCCCAGAAAACAAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28210883 54 -  71996105 GGAGAAATCAGTGGAT-AGATGCTTTCACTCTGTTCTTTGGCCCAGAAAACAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1872681 54 +   2316924 GGAGAAATCAGTGGAT-AGATGCTTTCGCTCTGTTCTTTGGCCCAGAAAACAAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1741702 54 -   3067355 GGAGAAATCAGTGGAT-AGATGCTTTCGCTCTGTTCTTTGGCCCAGAAAACAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171325266 54 - 171630274 GGAGGAATCAGTGGAC-AGATGCTTTTCCTCTGTTCTTTGGCCCAGAAAACAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            155563 54 -    375362 GGAGGAGTCAGTGGAC-AGATGCTTTCGCTCTGTTCTTTGGCCCAGAAAACAAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      156496 54 -    373274 GGAGGAATCAGTGGAC-AGATGCGTCCGCTCTGTTCTTTGGCCCAGAAAACAAAA
i cebCap1.NW_016108108v1   I 122 I 504
s aotNan1.NW_018494050v1      103846 54 -    285216 GGAGAAATCAGTGGAC-AGATGCTTTCACTCCGTTCTTCGGCCCAGaaaacaaaa
i aotNan1.NW_018494050v1   C 0 I 7
s otoGar3.GL873742           1479565 54 -   2232465 GGAGAAATCAGTGGAC-AAATGCTTTCGCTTTGTTCTTTGGCCCAGAAAACAAAA
i otoGar3.GL873742         C 0 C 0

a score=15235.000000
s hg38.chr6_GL000254v2_alt     54652 13 +   4827813 ct-----aaagt-aaaaaa
s panTro5.chr6              29025516 13 + 175400573 CT-----AACGT-AAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269079 13 + 173848474 CT-----AACGT-AAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5068282 12 +   6154872 CT-----AACGT--aaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74090467 11 + 122973662 CT-----AATGT---AAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29203437  9 + 172585720 CT-----AATGT-----AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28891930  9 - 170955103 CT-----AATGT-----AA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1864018  9 -   2996164 CT-----AATGT-----AA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1757944 14 -   2157725 CT-----AATGTAAAAAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28210937 11 -  71996105 CT-----ACTGT---AAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1872735 11 +   2316924 CT-----AATGT---GAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1741756 13 -   3067355 CT-----AATGT-AAAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171325320 13 - 171630274 AC-----AACGT-AAAAaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            155617 18 -    375362 ACGttaaaaaat-atatat
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1479619 13 -   2232465 -----AGAACGA-AAGGAA
i otoGar3.GL873742         C 0 I 2379
e aotNan1.NW_018494050v1      103900  7 -    285216 I
e cebCap1.NW_016108108v1      156550 504 -    373274 I

a score=454203.000000
s hg38.chr6_GL000254v2_alt     54665 86 +   4827813 aaacaaaaaacaaacaaacaaaaaaGATGATgctgggagcggtggctcacgcctgtaatcccagcactttgggaaactgtggcggg
s panTro5.chr6              29025529 82 + 175400573 AAACAAAAAACAAACAAA----AAAGATGATgctgggagcggtggctcacgcctgtaatcccaacactttgggaaactgtggcggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269092 82 + 173848474 AAACAAAAAACAAACAAA----AAAGATGATgctgggagcggtggctcacgcctgtaatcccaacactttgggaaactgtggcggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5068294 86 +   6154872 aaacaaaaaacaaacaaacaaaaaaGATGATgctgggagcggtggctcacgcctgtaatcccagcactttgggaaactgtggcggg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74090478 80 + 122973662 AAATAATAATCATA-ATA----AAAGATGATgctgggagcggtggctcacgcctgtaatcccagcactttgggaaac-gtggcggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29203446 67 + 172585720 AAA-------------------AAAGATGATgctgggagcagtggctcacgcctgtaatcccagcatttcgggaaactgtggcggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28891939 67 - 170955103 AAA-------------------AAAGATGATgctgggagcagtggctcacgcctgtaatcccagcatttcgggaaactgtggcggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1864027 67 -   2996164 AAA-------------------AAAGATGATActgggagcagtggctcacgcctgtaatcccagcattttgggaaactgtggcggg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1757958 67 -   2157725 AAA-------------------AAAGATGATgccgggagcggtggctcacgcctgtaatcccagcattttgggaaactgtggtggg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28210948 67 -  71996105 AAA-------------------AAAGATGACgctgggagcggtggctcacgcctgtaatcccagcattttgggaaactgtggcggg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1872746 67 +   2316924 AAA-------------------AAAGATGATgccgggagcggtggctcacgcctgtaatcccagcattttgggaaactgtggcggg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1741769 67 -   3067355 AAA-------------------AAAGATGATgctgggagcggtggctcacgcctgtaatcctagcattttgggaaactgtggcggg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171325333 67 - 171630274 aaa-------------------aaaaaagatgcctggcgcggtggctcaggcctgtaatcccagctactggggaggctgaggcggg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            155635 67 -    375362 ata-------------------tatataGATgccgggcgcggtggctcacgcctgtaatcccagctactggggaggctgaggcggg
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1479632 2379 -   2232465 I
e aotNan1.NW_018494050v1      103900  7 -    285216 I
e cebCap1.NW_016108108v1      156550 504 -    373274 I

a score=683548.000000
s hg38.chr6_GL000254v2_alt     54751 126 +   4827813 tggatcacctgaggtctggggttcgagaccagtgtggccaacatggtgaaaccccgtctctactaaaaatacaaaaattacccgggcctgatggca-cgcacctgtaaacccacctgccgaggcaga
s panTro5.chr6              29025611 126 + 175400573 tggatcacctgaggtctggggttcgagaccagtgtggccaacatggtgaaaccctgtctctactaaaaatacaaaaattacccgagcctgatggca-cgcacctgtaaacccacctgccgaggcaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269174 126 + 173848474 tggatcacctgaggtctggggttcgagaccagtgtggccaacatggtgaaaccctgtctctactaaaaatacaaaaattacccgagcctgatggca-cgcacctgtaaacccacctgccgaggcaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5068380 125 +   6154872 tggatcacctgaggtctggggttcgagaccagtgtggccaacatggtgaaaccc-gtctctactgaaaatacaaaaattacctgggcctgatgaca-cgcacctgtaaatccagctgccgagacaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74090558 126 + 122973662 tggatcacctgaggtctggagttcgagaccagagtggccaacatggtgaaaccccgtctctactaaaaatacaaaaattacctgggcgtgatggca-cgcacctgtaaacccaactgctgaggcagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29203513 126 + 172585720 tggatcacctgaggtctggatttcgagaccagcgtggccaacatgatataaccccgtctctactaaaaatacaaaaattacccaggcgtgatgaca-cgcgcctgtaatcccagttgctgaggcagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28892006 126 - 170955103 tggatcacctgaggtctggagttcgagaccagcgtggccaacatgatataaccccgtctctactaaaaatacaaaaattacccaggcgtgatgaca-cgcgcctgtaatcccagttgctgaggcagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1864094 127 -   2996164 tggatcacctgaggtctggagttcgagaccagcgtggccaacatgatgtaaccccgtctctactaaaaatacaaaaattacccaggcgtgatgacaccgcgcctgtaatcccagttgctgaggcagg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1758025 126 -   2157725 tggatcacctgaggtctggagttcgagaccagcatggccaacatgaggtaaccccgtctctactaaaaatacaaaaattaccccggcgtgatggca-cgcgcctgtaatcccagctgctgaggcagg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28211015 126 -  71996105 tggatcacctgaggtctggagttcgagaccagcatggccaacatggtgtaaccccgtctctactaaaaatacaaaaattacccaggcgtgatggca-cgcgcctgtaatcccagctgctgaggcagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1872813 126 +   2316924 tggatcacctgaggtctggagttcgagaccagcatggccaacatgaggtaaccccgtctctactaaaaatacaaaaattaccccggcgtgatggca-cgcgcctgtaatcccagctgctgaggcagg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1741836 126 -   3067355 tggatcacctgaggtctggagttcgagaccagtgtggccaacatggtgtaaccccgtctctactaaaaacacaaaaattacccaggcatgatggca-cgcgcctgtaatcgcagctgctgaggcagc
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            155702   0 -    375362 C
e otoGar3.GL873742           1479632 2379 -   2232465 I
e aotNan1.NW_018494050v1      103900   7 -    285216 I
e cebCap1.NW_016108108v1      156550 504 -    373274 I
e calJac3.chr4             171325400   0 - 171630274 C

a score=590209.000000
s hg38.chr6_GL000254v2_alt     54877 104 +   4827813 agaatcgcttgaacccgggaggcagcggttgtaatgagccaagattaagccactgcactccagcctgggctacagagcgagactctgtctccaaaaa-------------------------------------------------aaaaaaa
s panTro5.chr6              29025737 104 + 175400573 agaatcgcttgaacccgggaggcagcggttgcaatgagccaagattaagccactgcactccagcctgggctacagagcgagactctgtctccaaaaa-------------------------------------------------aaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269300 104 + 173848474 agaatcgcttgaacccgggaggcagcggttgcaatgagccaagattaagccactgcactccagcctgggctacagagcgagactctgtctaccaaaa-------------------------------------------------aaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5068505 104 +   6154872 agaatcgcttgaacctgggaggcagcggttgcaatgagccaagattaagccactgcactccagcctgggctacagagcgagactctgtctccaaaaa-------------------------------------------------aaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74090684 102 + 122973662 agaatcgcttgaacccgggaggcagaggttgcagtgagccgagatcgcgccactgcactccagcctgggctacagagcgagactctgtctccaaaaa-------------------------------------------------aaaag--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29203639 104 + 172585720 agaatcactcgaacccgggaggcagaggttgcagtgagcggagatcgagccactgcactgcagcctgggctacagagagagactccgtctcaaaaaa-------------------------------------------------aaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28892132 104 - 170955103 agaatcactcgaacccgggaggcagaggttgcagtgagcggagatcgagccactgcactgcagcctgggctacagagagagactccgtctcaaaaaa-------------------------------------------------aaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1864221 100 -   2996164 agaatcactcgaaccc-ggaggcaga-gttgcagtgagc-gagatcgagccactgcactgcagcctgggcta-agaggagaactccgtctcaaaaaa-------------------------------------------------aaaaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1758151 104 -   2157725 agaatcactcgaacccgggaggcagaggttgcagtgagcggagatcgcgccactgcactctagcctgggctacagagagagactccgtctcaaaaaa-------------------------------------------------aaaaaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28211141 104 -  71996105 agaatcactcgaacccgggaggcagaggttgcagtgagcggagatcgcgccactacactccagcctgggctacagagagagactccgtctaaaaaaa-------------------------------------------------aaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1872939 146 +   2316924 agaatcactcgaacccgggaggcagaggttgcagtgagcggagatcgcgccactgcactccagcctgggctacagaaagagactccgtctcaaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1741962  88 -   3067355 agaatcgctcgaacccgggaggca----------------gagatcgcgccactgcactccagcctgggctacagaaagagactccgtttcaaaaaa-------------------------------------------------aaaaaaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171325400 104 - 171630274 aaaatggcctgaatcccagagactggggttggggtgagccgagattgcgccgctgccctgcagcctgggccacacagcgagactccgtctcaagaca-------------------------------------------------gaacaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            155702  96 -    375362 aaaatcgcctgaatccccgaggcgggggttgcggtga-ccgagattgcgccgctgccctccagcctgggcggcaca-------tccgtctcaagaca-------------------------------------------------gaacaaa
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1479632 2379 -   2232465 I
e aotNan1.NW_018494050v1      103900   7 -    285216 I
e cebCap1.NW_016108108v1      156550 504 -    373274 I

a score=29204.000000
s hg38.chr6_GL000254v2_alt     54981 7 +   4827813 aaaaaaa
s panTro5.chr6              29025841 7 + 175400573 aaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269404 7 + 173848474 aaanaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5068609 7 +   6154872 aaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29203743 7 + 172585720 aaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28892236 7 - 170955103 aaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1864321 7 -   2996164 aaaaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1758255 7 -   2157725 aaaaaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28211245 7 -  71996105 aaaaaaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1742050 6 -   3067355 aaaaGG-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171325504 7 - 171630274 acaaaca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            155798 7 -    375362 ataaaca
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      103907 7 -    285216 aaaaaaa
i aotNan1.NW_018494050v1   I 7 C 0
e otoGar3.GL873742           1479632 2379 -   2232465 I
e cebCap1.NW_016108108v1      156550 504 -    373274 I
e manLeu1.NW_012104165v1     1873085 0 +   2316924 C
e nomLeu3.chr1a             74090786 0 + 122973662 C

a score=5645.000000
s hg38.chr6_GL000254v2_alt     54988 16 +   4827813 aaaaaag---------aaTGGCCGC
s panTro5.chr6              29025848 15 + 175400573 aaaaaa----------aaTGGCCGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269411 13 + 173848474 aaag------------aaTGGCCGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5068616 12 +   6154872 aag-------------aaTGGCCGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74090786  9 + 122973662 ----------------aaTGGCCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29203750 25 + 172585720 aaaaaaaaaaaaaaaaaaaGGCCGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28892243 25 - 170955103 aaaaaaaaaaaaaaaaaaaGGCCGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1864328 20 -   2996164 aaaaaaaaaaaaaaa-----GCCGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1758262  8 -   2157725 aaG-----------------GCCGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28211252  7 -  71996105 aG------------------GCCGC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1742056  5 -   3067355 --------------------GCCGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171325511 16 - 171630274 aaaaaaC---------TATGCCCGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            155805 16 -    375362 aaaaaCC---------TATGCCCGC
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      103914 16 -    285216 aaaaaaa---------GATGGCCGC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742            780592 16 +   2232465 AAAGAAG---------AATTTTCAT
i otoGar3.GL873742         I 3519 C 0
e cebCap1.NW_016108108v1      156550 504 -    373274 I
e manLeu1.NW_012104165v1     1873085  0 +   2316924 C

a score=9100.000000
s hg38.chr6_GL000254v2_alt     55004 1 +   4827813 G
s panTro5.chr6              29025863 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269424 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5068628 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74090795 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29203775 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28892268 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1864348 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1758270 1 -   2157725 G
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28211259 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1742061 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      157054 1 -    373274 G
i cebCap1.NW_016108108v1   I 504 C 0
s aotNan1.NW_018494050v1      103930 1 -    285216 G
i aotNan1.NW_018494050v1   C 0 T 9568
s otoGar3.GL873742            780608 1 +   2232465 G
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            155821 0 -    375362 C
e calJac3.chr4             171325527 0 - 171630274 C
e manLeu1.NW_012104165v1     1873085 0 +   2316924 C

a score=2407500.000000
s hg38.chr6_GL000254v2_alt     55005 284 +   4827813 GGGCGCTT-------TTCTCCCTTC-------TTCTTTGTCTTTCCTTCTCTTTAATCATAGCAC----AAAATGAGAGCAAATGTGAACCTC-CCGTGGATGTGC--ACAC-TTTTGTTTGGGT-TCAAGAGACCCTGTTGGGATC----CCATTCTTCTTTCTT-----CCTCATTTCTTTTTCACCTTCCTTCTGCCGTCACAATCGCCTTCAGTGATGTCGAAGCTCACGGCATAGAAATGGGTTATAAATGGAGGCAACCCATTG---------------------------------------------------------GGTTACGTCTTTACTC--TCTATATGTGCAGAAATAGGACAGAAAAAG----
s panTro5.chr6              29025864 284 + 175400573 GGGCGCTT-------TTCTCCCTTC-------TTCTTTGTCTTTCCTTCTCTTTAATCATAGCAC----AAAATGAGAGCAAATGTGAACCTC-CCGTGGATGTGC--ACAC-TTTTGTTTGGGT-TCAAGAGACCCTGTTGGGATC----CCATTCTTCTTTCTT-----CCTCATTTCTTTTTCACCTTCCTTCTGCCGTCACAATCGCCTTCAGTGATGTCGAAGCTCACGGCATAGAAATGGGTTATAAATGGAGGCAACCCATTG---------------------------------------------------------GGTTACGTCTTTACTC--TCTATATGTGCAGAAATAGGACAGAAAAAG----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269425 284 + 173848474 GGGCGCTT-------TTCTCCCTTC-------TTCTTTGTCTTTCCTTCTCTTTAATCATAGCAC----AAAATGAGAGCAAATGTGAACCTC-CCGTGGATGTGC--ACAC-TTTTGTTTGGGT-TCAAGAGACCCTGTTGGGATC----CCATTCTTCTTTCTT-----CCTCATTTCTTTTTCACCTTCCTTCTGCCGTCACAATCGCCTTCAGTGATGTCGAAGCTCACGGCATAGAAATGGGTTATAAATGGAGGCAACCCATTG---------------------------------------------------------GGTTACGTCTTTACTC--TCTATATGTGCAGAAATAGGACAGAAAAAG----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5068629 282 +   6154872 GGGCGCTT-------TTCTCCCTTC-------TTCTTTGTCTTTCCTTCTCTTTAATCATAGCAC----AAAATGAGAGCAAATGTGAACCGC-CCGTGGATGTGC--ACAC-TTTTGTTTGGGT-TCAAGAGACCCTGTTGGGATC----CCATTCTTCTTTCTT-----CCTCATTTC-TTTTCACCTTCCTTCTGCCGTCGCAATAGCCTTCAGTGATGTCGAAGCTCACGGCATAGAAAT-GGTTATAAATGCAGGCAACCCATTG---------------------------------------------------------GGTTACGTCTTTACTC--TCTATATGTTCAGAAATAGGACAGAAAAAG----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74090796 291 + 122973662 GGGCGCTTTTCTCCCTTCTCCCTTC-------TTCTTTGTCTTTCCTTCTCTTTAATCATAGTAC----AAAATGAGAGCGAATGTGAACCGC-CGGTGGGTGTGC--ACAC-TTTTGTTTGGGT-TCAAGAGACCCTGTTGGGATC----CCATTCTTCTTTCTT-----CCTCATTTCTTTttcaccttccttctgccttcgcaatcgccttcgGTGATGTAGAAGCTCACAGCATAGAGATGGGTTATAAATGGAGGCAACCCATTG---------------------------------------------------------GGTTACGTCTTTACTC--TCTATATGTGCAGAAATAGGATAGAAAAAG----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29203776 288 + 172585720 CGGCGTTT-------TTCTCCCTTCTTCTTCTTTCTTTGTCTTTCCTTCTCTTTAATCATAGTAC----AAAATGAGAGCTAATGTGAACTGC-CCGTGGATGTGC--AGTC-TTTTGTTTGGGT-TCAAGAGGCCCTGTTGGAATC----CCA---TTCTTTCTT-----CCTCATTTCTTTTTCACCTTCCTTCGGCCGTGGCAGTCGCCTTCGGTGATGTCGAAGCTCACAGCATAGAGATTGGTTATAAATGGAGGCAACCCATTG---------------------------------------------------------GGTTACGTCTTTACTC--TCTGTATGTGCAGAAATAGGATAGAAAAAG----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28892269 288 - 170955103 CGGCGTTT-------TTCTCCCTTCTTCTTCTTTCTTTGTCTTTCCTTCTCTTTAATCATAGTAC----AAAATGAGAGCTAATGTGAACTGC-CCGTGGATGTGC--AGTC-TTTTGTTTGGGT-TCAAGAGGCCCTGTTGGAATC----CCA---TTCTTTCTT-----CCTCATTTCTTTTTCACCTTCCTTCGGCCGTGGCAGTCGCCTTCGGTGATGTCGAAGCTCACAGTATAGAGATTGGTTATAAATGGAGGAAACCCATTG---------------------------------------------------------GGTTACGTCTTTACTC--TCTGTATGTGCAGAAATAGGATAGAAAAAG----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1864349 284 -   2996164 CGGCGttt-------ttct--cttcttcttctttctttgtctttccttctcttTAATCATAGTAC-----AAATGAGAGCTAATGTGAACTGC-CCGTGG-TGTGC--AGTCTTTTTGTTTGGGT-TCAAGAGGCCCTGTT-GAATC----CCA---TTCTTTCTT-----CCTCATTTCTTTTTCACCTTCCTTCGGCCGTGGCAGTCGCCTTCGGTGATGTCGAAGCTCACAGCATAGAGATTGGTTATAAAATGGAGCAACCCATT----------------------------------------------------------GGTTACGTCTTTACTCTTTCTGTATGTGCAGAAATA-GATAGAAAAGA----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1758271 286 -   2157725 CGGCGttt-------ttctctcttcttc----ttctttgtctttccttctcttTAATCATAGTAC----AAAATGAGAGCTAATGTGAACCGC-CCCTGGATGTGC--AGTC-TTTTGTTTGGGT-TCAGGAGGCCCTGTTGGGATC----CCA---TTCTTTCTT-----CCTCATTTCTTTTTCACCTTCCTTCGGCCGTGGCAATCGCCTTCGGTGATGTCGAAGCTCACAGCATAGAGATTGGTTATAAATGGAGGCAACCCATTG---------------------------------------------------------GGTTACGTCTTTACTCTCTCTATATGTGCAGAAATAGGATAGAAAAAG----
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28211260 284 -  71996105 CGGCGTTT-------TTCTCCCTTCTTC----TTCTTTGTCTTTCCTTCTCTTTAATCATAGTAC----AAAGTGAGAGAGAATGTGAACTGC-CCGTGGATGTGC--AGTC-TTTTGTTTAGGT-TCAAGAGGCCCTGTTGGGATC----CCA---TTCTTTCTT-----CCTCATTTCTTTTTCACCTTCCTTCGGCTGTGGCAATCGCCTTCGGTGACGTCGAAGCTCACAGCATAGAGATTGGTTATAAATGGAGGCAACCCATTG---------------------------------------------------------GGTTACGTCTTTACTC--TCTATATGTGCAGAAATAGGATAGAAAAAG----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1873085 276 +   2316924 ---------------NTCTCCCTTCTTC----TTCTTTGTCTTTCCTTCTCTTTAATCATAGTAC----AAAATGAGAGCTAATGTGAACCGC-CCGTGGATGTGC--AGTC-TTTTGTTTGGGT-TCAAGAGGCCCTGTTGGGATC----CCA---TTCTTTCTT-----CCTCATTTCTTTTTCACCTTCCTTCGGCCGTGGCAATCGCCTTCGGTGATGTCGAAGCTCACAGCATAGAGATTGGTTATAAATGGAGGCAACCCATTG---------------------------------------------------------GGTTACGTCTTTACTC--TCTATATGTGCAGAAATAGGATAGAAAAAG----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1742062 284 -   3067355 GGGCGTTT-------TTCTCCCTTCTTC----TTCTTTGTCTTTCCTTCTCTTTAATCATAGTAG----AAAATGAGAGCGAATGTGAACCGC-CCGTGGATGTGC--ACGC-TTTTGTTTGGGT-TCAAGAGACCCTATTGGGATC----CCA---TTCTTTCTT-----CCTCATTTCGTTTTCATCTTCCTTCGGCCGTCGCAATCGCCTTCCGTGATGTCGAAGCTCACAGCATAGAGATTGGTTATAAATGGAGGCAACCCACTG---------------------------------------------------------GGTTACGTCTTTACTG--TCTACATGTGCAGAAATAGGATAGAAAAAG----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171325527 339 - 171630274 GGGCTCTT-------TTCTCCCTCC-------TTCTTCGTCTTTTCATCTCTTTAATCATAGCAC----AAAATGAGAGCGAATGTGAACCGC-CTGTTGATGCTC--GCGC-TTTTATTTGGGT-TCCGGAGACCCCGCTGAGATT----CCATTCTTCTTCCCG------CTCATTTCTTTCTCACCCTCCTTCTGCGATTGCAATGGCCTTAGGTGATGGGGAGGATGGCAGCACAGAAATC-GATGTAAGTGGAGGCGACCCACTGGTTACGTTTTTACTTTCTATATGTGCAGAAATCGGATGTAAGTGGAGACGACCCACTGGTTACGTTTTTACTT--TCTATATGTGCAGAAATCGGACAGAAAAAG----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            155821 281 -    375362 TGGCGCTT-------TTCTCCCTC----------CTTCGTCTTTTCATCTCTTTAATCATAGTAC----AAAATGAGAGCGAATGTGAACCGC-CTGTTGATGTGT--ACGC-TTTTATTTGGGT-TCCAGAGACCCCGTTGAGATC----CCATTCTTCCCCCCG-----CCCCATTTCTTTTTCACCTTCCTTCTGCTGTTGCAATCGCCTTAGGTGATGGGGAGGCTTGCAGCACAGAAATCGGATGTAAGTGCAGGCGACCCATTG---------------------------------------------------------GGTGACGTTTTTACTT--TCTATATGTGCAGAAATAGGATAGAAAAAG----
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      157055 289 -    373274 GGGCGCTT-------TTCTCCCTCC-------TTCTTCGTCTTTTCATCTCTTTAATCATAGTAC----AAAATGAGAGCGAATGTGAACCGC-CTGTTGATGTGT--ACGC-TTTTATTTGGGT-TCCAGAGACCCCGTTGAGATC----CCATTCTTCTCCCCCTCCCTTCCCATGTCTTTGTCACTTTCCTTCTGCCGTTGCAATCGCCTTAGGCGATAGGGAGGCCCGCAGCACAGAAATCGGATATAAGTGGAGGCGACCCATTG---------------------------------------------------------GGTTACGTTTTTACTT--TCTATATGTGCAGAAATAGGATAGAAAAAG----
i cebCap1.NW_016108108v1   C 0 I 76
s aotNan1.NW_018494050v1       94363 267 -    285216 GGGCGCTT-------TTCTCCCTCC-------TTCTTCGCCTTTTCATCTCTTTAATCACGGTAC----AAAGTGAGAGCGAATGTGAACCGC-CTGTTGATGTGC--ACG-----------------CAGGGACCCCGTTGAGATA----CCGTTCTTCTTCCCC------CTCATTTCGTTTTCACCTTCCTTCTGCCGTTGCAATCGCCTTA-GTGATGGGGAGGCTCGCAGCACAGAAATCGGATATAAGTGGAGGCGACCCATTG---------------------------------------------------------GGTTACGTTTTTACTT--TCTATATGTGCAGAAATAGGATACAAAAAG----
i aotNan1.NW_018494050v1   T 9568 C 0
s otoGar3.GL873742            780609 282 +   2232465 -AGCCCCT-------TGCTTTCT---------TTCTATTTTTCTCCT--TCTTCAATAGCAATAAAAAAAAAATAGAAGACAAAGTGAACAGCTTCATTAATATGATGGGAC-ATTTGTCTTGATAGCGGAAGAACCTGCATAAATCAGTTCTA---TTATTACTT-----C---------TTATCTTCTTTCTTCTGTGAAGACAACTATC-TGGATGATGTCAAGACTCACAGGATAAAAATGGTGCAATATTACATGCGATCCATTG---------------------------------------------------------AGTCATGTGTTTACTT--TTCATGTTAGCAAGAAATGAGTATATAAATGAAT
i otoGar3.GL873742         C 0 C 0

a score=72680.000000
s hg38.chr6_GL000254v2_alt     55289 16 +   4827813 GTGCGGAGGCAGAAGT
s panTro5.chr6              29026148 16 + 175400573 GTGCGGAGGCAGAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269709 16 + 173848474 GTGCGGAGGCAGAAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5068911 16 +   6154872 GTGCGGAGGCAGAAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091087 16 + 122973662 GTGCAGAGGCAGAAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204064 16 + 172585720 GTGCGGAGGCAGAAGT
i rheMac8.chr4             C 0 I 20
s macFas5.chr4              28892557 16 - 170955103 GTGCGGAGGCAGAAGT
i macFas5.chr4             C 0 I 20
s macNem1.NW_012011356v1     1864633 15 -   2996164 GGGC-GAGGCAGAAGT
i macNem1.NW_012011356v1   C 0 I 20
s cerAty1.NW_012001495v1     1758557 16 -   2157725 GTGCGGAGGAAGAAGT
i cerAty1.NW_012001495v1   C 0 I 20
s chlSab2.chr17             28211544 16 -  71996105 GTGCAGAGGCAGAAGT
i chlSab2.chr17            C 0 I 20
s manLeu1.NW_012104165v1     1873361 16 +   2316924 GTGCGGAGGAAGAAGT
i manLeu1.NW_012104165v1   C 0 I 20
s colAng1.NW_012115566v1     1742346 16 -   3067355 GTGCAGAGGCAGAAGT
i colAng1.NW_012115566v1   C 0 I 20
s calJac3.chr4             171325866 10 - 171630274 ------ATAATGACGT
i calJac3.chr4             C 0 I 2
s saiBol1.JH378348            156102  7 -    375362 ------ATAAG---GT
i saiBol1.JH378348         C 0 I 2
s aotNan1.NW_018494050v1       94630 10 -    285216 ------ATAGTGACGT
i aotNan1.NW_018494050v1   C 0 I 50
s otoGar3.GL873742            780891 16 +   2232465 TTTTAAAAACTGAAGG
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      157344 76 -    373274 I

a score=53235.000000
s hg38.chr6_GL000254v2_alt     55305 12 +   4827813 AAGTCT-ATGTTG
s panTro5.chr6              29026164 12 + 175400573 AAGTCT-ATGTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269725 12 + 173848474 AAGTCT-ATGTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5068927 12 +   6154872 AAGTCT-ATGTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091103 12 + 122973662 AAATCT-ATGTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204100 13 + 172585720 GAGTCTAACGTTG
i rheMac8.chr4             I 20 C 0
s macFas5.chr4              28892593 13 - 170955103 GAGTCTAACGTTG
i macFas5.chr4             I 20 C 0
s macNem1.NW_012011356v1     1864668 13 -   2996164 GAGTCTAACGCTG
i macNem1.NW_012011356v1   I 20 C 0
s cerAty1.NW_012001495v1     1758593 13 -   2157725 GAGTCTAACGTTG
i cerAty1.NW_012001495v1   I 20 C 0
s chlSab2.chr17             28211580 12 -  71996105 GAGTCTAAC-TTG
i chlSab2.chr17            I 20 C 0
s manLeu1.NW_012104165v1     1873397 13 +   2316924 GAGTCTAACGTTG
i manLeu1.NW_012104165v1   I 20 C 0
s colAng1.NW_012115566v1     1742382 13 -   3067355 GAGTCTAATGTTG
i colAng1.NW_012115566v1   I 20 C 0
s calJac3.chr4             171325878 12 - 171630274 AAATCT-ATGTTA
i calJac3.chr4             I 2 C 0
s saiBol1.JH378348            156111 12 -    375362 AAATCG-ATGTTA
i saiBol1.JH378348         I 2 C 0
s otoGar3.GL873742            780907 12 +   2232465 ATGGCT-GAGTTG
i otoGar3.GL873742         C 0 n 0
e aotNan1.NW_018494050v1       94640 50 -    285216 I
e cebCap1.NW_016108108v1      157344 76 -    373274 I

a score=171393.000000
s hg38.chr6_GL000254v2_alt     55317 39 +   4827813 CTTGAGAATTAGGTTTGAGCACTACCA--GAGCAAAAAGT-------------------------C
s panTro5.chr6              29026176 62 + 175400573 CTTGAGAATTAGGTTTGAGCACTACCA--GAGCaaaaaaaaaaaaa--aaaaaaaaaaacacaaaC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269737 45 + 173848474 CTTGAGAATTAGGTTTGAGCACTACCA--GAGCAAAAAAAAAAAAA-------------------C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5068939 64 +   6154872 CTTGAGAATTAGGTTTGAGCACTATCA--GAGCaaaaaaaaaacaaacaaaacaaacaaaaaaCAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091115 37 + 122973662 CTTGAGAATTAGGTTTGAGCACTACCA--GAGCAAAAC---------------------------C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204113 37 + 172585720 CTTGAGAATTAGGTTTGAGCACTGCCA--TAGCAAAAC---------------------------C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28892606 37 - 170955103 CTTGAGAATTAGGTTTGAGCACTGCCA--TAGCAAAAC---------------------------C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1864681 35 -   2996164 CTTGAGAATTAGG-TTGAGCACTGCCA--TAGC-AAAC---------------------------C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1758606 37 -   2157725 CTTGAGAATTAGGTTTGAGCACTGCCA--TAGCAAAAT---------------------------C
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28211592 37 -  71996105 CTTGAGAATTAGGTTTGAACACTGCCA--TAGCAAAAC---------------------------C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1873410 37 +   2316924 CTTGAGAATTAGGTTTGAGCACTGCCA--TAGCAAAAT---------------------------C
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1742395 37 -   3067355 CTTGAGAATTAGGTTTGAGCACTGCCA--TAGCAAAAC---------------------------C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171325890 37 - 171630274 CTTGAGAATTAGACTTCGGTA--GTGAGTTTGCACTAT---------------------------C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156123 39 -    375362 CTTGACAATTAGACTTCGGTACTGAGAGTTTGCACAAT---------------------------C
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742            780919  0 +   2232465 I
e aotNan1.NW_018494050v1       94640 50 -    285216 I
e cebCap1.NW_016108108v1      157344 76 -    373274 I

a score=102067.000000
s hg38.chr6_GL000254v2_alt     55356 17 +   4827813 ACCGTTtggaggtgccg
s panTro5.chr6              29026238 17 + 175400573 ACCGCTtggaggtgccg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269782 17 + 173848474 ACCGTTtggaggtgccg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069003 17 +   6154872 ACCGTTtggaggtgccg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091152 17 + 122973662 ACCGTTtggaggtgccg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204150 17 + 172585720 AACGTTtggaggtgctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28892643 17 - 170955103 AACGTTtggaggtgctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1864716 15 -   2996164 AACG-Ttggaggtgct-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1758643 17 -   2157725 AACGTTtggaggtgctg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28211629 17 -  71996105 AACGTTtggaggtgctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1873447 17 +   2316924 AACGTTtggaggtgctg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1742432 17 -   3067355 AATGTTtggaggtgctg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171325927 14 - 171630274 ---ACgtgggagtgctg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156162 14 -    375362 ---ACTCgggaatgcag
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1       94690 17 -    285216 ATCACTtgggagtgctg
i aotNan1.NW_018494050v1   I 50 C 0
e otoGar3.GL873742            780919  0 +   2232465 I
e cebCap1.NW_016108108v1      157344 76 -    373274 I

a score=620930.000000
s hg38.chr6_GL000254v2_alt     55373 68 +   4827813 gggatcgaacccgggacct--catacatgcaaagcatgcgctctaccactgagctacacccccTTCCTGA
s panTro5.chr6              29026255 68 + 175400573 gggatcgaacccggggcct--catacatgcaaagcatgtgctctaccactgagctacacccccTTCCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269799 68 + 173848474 gggatcgaacccggggcct--catacatgcaaagcatgtgctctaccactgagctacacccccTTCCTGA
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01015250v1     5069020 68 +   6154872 gggatcgaacccggggcct--catacatgcaaagcatgcgctctaccactgagctacacccccTTTCTGA
i gorGor5.CYUI01015250v1   C 0 I 1
s nomLeu3.chr1a             74091169 68 + 122973662 ggaatcgaacccgggccct--catacatgcaaagcatgcgctctaccactgagctacacccccCTCCCGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204167 68 + 172585720 gggatcgaacccggggcct--catgcatgcaaagcatgcgctctaccactgagctacacccccTTCCTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28892660 68 - 170955103 gggatcgaacccggggcct--catgcatgcaaagcatgcgctctaccactgagctacacccccTTCCTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1864731 63 -   2996164 gggatcgaccc---ggcct--catgcatgc-aagcatgcgctctaccactgagctaca-ccccTTCCTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1758660 68 -   2157725 gggatcgaacccggggcct--catgcatgcaaagcatgcgctctaccactgagctacacccccTTCCTGA
i cerAty1.NW_012001495v1   C 0 I 772
s chlSab2.chr17             28211646 68 -  71996105 gggatcgaacccggggcct--catgcatgcaaagcatgcgctctaccactgagctacacccccTTCCTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1873464 68 +   2316924 gggatcgaacccggggcct--catgcatgcaaagcatgcgctctaccactgagctacacccccTTCCTGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1742449 68 -   3067355 gggatcgaacccggggcct--catacatgcaaagcatgcgctctaccactgagctacacccccTTCCTGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171325941 70 - 171630274 gggctcaaacccagggcctcacacacacacaacgcacgcgctccaccactgaactaAGCTCACTACCCGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156176 68 -    375362 gggatcgaacccagggact--cacccacacaaagcacgcgctctaccgctgagctacaCTCACTACCCGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      157420 68 -    373274 gggatcgaacccaaggcct--cacacacacaaagtacacgctctaccactgagctacactcACTACTGGA
i cebCap1.NW_016108108v1   I 76 C 0
s aotNan1.NW_018494050v1       94707 68 -    285216 gggatcaaacccagggcct--cacacacacaaggcacacgctctaccactgagctacactcACTACCCGA
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742            780919  0 +   2232465 I

a score=-28810.000000
s hg38.chr6_GL000254v2_alt     55441 4 +   4827813 AAAA--
s panTro5.chr6              29026323 4 + 175400573 ACAA--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269868 4 + 173848474 AAAA--
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01015250v1     5069089 4 +   6154872 AAAA--
i gorGor5.CYUI01015250v1   I 1 C 0
s nomLeu3.chr1a             74091237 1 + 122973662 ---A--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204235 1 + 172585720 ---A--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28892728 1 - 170955103 ---A--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1864794 1 -   2996164 ---A--
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28211714 1 -  71996105 ---A--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1873532 1 +   2316924 ---T--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1742517 4 -   3067355 AATA--
i colAng1.NW_012115566v1   C 0 I 24
s calJac3.chr4             171326011 4 - 171630274 --GTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156244 4 -    375362 --AAGG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      157488 3 -    373274 --AAG-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       94775 4 -    285216 --AAGG
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742            780919 0 +   2232465 I
e cerAty1.NW_012001495v1     1758728 772 -   2157725 I

a score=3575.000000
s hg38.chr6_GL000254v2_alt     55445 1 +   4827813 A
s panTro5.chr6              29026327 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269872 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069093 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091238 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204236 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28892729 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1864795 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28211715 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1873533 1 +   2316924 A
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171326015 1 - 171630274 G
i calJac3.chr4             C 0 I 1978
s aotNan1.NW_018494050v1       94779 1 -    285216 G
i aotNan1.NW_018494050v1   C 0 C 0
e saiBol1.JH378348            156248 0 -    375362 C
e otoGar3.GL873742            780919 0 +   2232465 I
e cebCap1.NW_016108108v1      157491 0 -    373274 C
e colAng1.NW_012115566v1     1742521 24 -   3067355 I
e cerAty1.NW_012001495v1     1758728 772 -   2157725 I

a score=2112.000000
s hg38.chr6_GL000254v2_alt     55446 2 +   4827813 AT
s panTro5.chr6              29026328 2 + 175400573 AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269873 2 + 173848474 AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069094 2 +   6154872 AT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091239 2 + 122973662 AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204237 2 + 172585720 AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28892730 2 - 170955103 AA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1864796 2 -   2996164 AA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28211716 2 -  71996105 AA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1873534 2 +   2316924 AA
i manLeu1.NW_012104165v1   C 0 C 0
s cebCap1.NW_016108108v1      157491 1 -    373274 -T
i cebCap1.NW_016108108v1   C 0 C 0
e saiBol1.JH378348            156248 0 -    375362 C
e otoGar3.GL873742            780919 0 +   2232465 I
e aotNan1.NW_018494050v1       94780 0 -    285216 C
e calJac3.chr4             171326016 1978 - 171630274 I
e colAng1.NW_012115566v1     1742521 24 -   3067355 I
e cerAty1.NW_012001495v1     1758728 772 -   2157725 I

a score=42545.000000
s hg38.chr6_GL000254v2_alt     55448 7 +   4827813 CCTTCTT
s panTro5.chr6              29026330 7 + 175400573 CCTTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269875 7 + 173848474 CCTTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069096 7 +   6154872 CCTTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091241 7 + 122973662 CCTTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204239 7 + 172585720 CCTTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28892732 7 - 170955103 CCTTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1864798 7 -   2996164 CCTTCTT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28211718 7 -  71996105 CCTTGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1873536 7 +   2316924 CCTTCTT
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171327994 7 - 171630274 CCCCTTT
i calJac3.chr4             I 1978 C 0
s saiBol1.JH378348            156248 7 -    375362 CCTTTTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      157492 7 -    373274 GCTTTTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       94780 6 -    285216 -CCCTTT
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742            780919 0 +   2232465 I
e colAng1.NW_012115566v1     1742521 24 -   3067355 I
e cerAty1.NW_012001495v1     1758728 772 -   2157725 I

a score=16905.000000
s hg38.chr6_GL000254v2_alt     55455 2 +   4827813 GT
s panTro5.chr6              29026337 2 + 175400573 GT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269882 2 + 173848474 GT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069103 2 +   6154872 GT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091248 2 + 122973662 CT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204246 2 + 172585720 GT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28892739 2 - 170955103 GT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1864805 2 -   2996164 GT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28211725 2 -  71996105 GT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1873543 2 +   2316924 GT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1742545 2 -   3067355 GT
i colAng1.NW_012115566v1   I 24 C 0
s calJac3.chr4             171328001 2 - 171630274 GT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156255 2 -    375362 GT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      157499 2 -    373274 GT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       94786 2 -    285216 GT
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742            780919 0 +   2232465 I
e cerAty1.NW_012001495v1     1758728 772 -   2157725 I

a score=754405.000000
s hg38.chr6_GL000254v2_alt     55457 83 +   4827813 AATAATTTCCAGGAGGTAACTTTCTTTTTCTG----AGTATTGTGGAGCGTCTGCAGCTGCTGTGAGTAGAAGATACTAGGTACTAA
s panTro5.chr6              29026339 83 + 175400573 AATAATTTCCAGGAGGTAACTTTCTTTTTCTG----AGTATTGTGGAGCGTCTGCAGCTGCTGTGAGTAGAAGATACTAGGTACTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269884 83 + 173848474 AATAATTTCCAGGAGGTAACTTTCTTTTTCTG----AGTATTGTGGAGCGTCTGCATCTGCTGTGAGTAGAAGATACTAGGTACTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069105 83 +   6154872 AATAATTTCCAGGAGGTAACTTTCTTTTTCTG----AGTATTGTGGAGCGTCTGCAGCTGCTGTGAGTAGAAGATACTAGGTACTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091250 83 + 122973662 AATAATTTCCAGGAGGTAACTTTCTTTTTCTG----AGTATTATGGAGTGTCTGCAGCTGCTGTGAGTAGAAGATACTAGGTACTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204248 83 + 172585720 AATAATTTTCAGGAGGTAGCTTTCTTTTTCTG----AGTCTAATGGAGCGTCTGCAGCGGCTGTGAGTAGAAGATCCTCGGTACTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28892741 83 - 170955103 AATAATTTTCAGGAGGTAGCTTTCTTTTTCTG----AGTCTAATGGAGCGTCTGCAGCGGCTGTGAGTAGAAGATCCTCGGTACTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1864807 80 -   2996164 AATAATTTTCAGGAGGTAGCTTTCTTTCT-TG----AGTCTAATGGAGCGTCTGCAGCGGCTGTGAGTAGAAGATCCTCG--ACTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1759500 81 -   2157725 AATAATTTTCAGGAGGTAGCTTCTTTTC--TG----AGTATAATGGAGCGTCTGCAGCGGCTGTGAGTAGAAGATCCTCGGTACTAA
i cerAty1.NW_012001495v1   I 772 C 0
s chlSab2.chr17             28211727 83 -  71996105 AATAATTTTCAGGAGGTAGCTTTCTTTTTCTG----AGTATTATGGAGCGTCTGCAGCGGCTGTGAGTAGAAGATCCTCGGTACTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1873545 83 +   2316924 AATAATTTTCAGGAGGTAGCTTTCTTTTTCTG----AGTATAATGGAGCGTCTGCAGCGGCTGTGAGTAGAAGATCCTCGGTACTAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1742547 83 -   3067355 AATAATTTTCAGGAGGTAGCTTTCTTTTTCTG----AGTATTATGGAGCGTCTGCAGCTGCTGTGAGTAGAAGATCCTCGGTACTAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328003 87 - 171630274 AATAATTTTCTAGAGGTAACTTTATTTTTCCGAGACAGTATTATGGAGCGTCTGCAGCTGCTGTGCGTAGAAGACGCCCGGTGCTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156257 87 -    375362 AATAATTTTCAAGAGGTAACTTTATTTTTCTGAGACAGTATTATGGAGCGTCTGCAGCTGCTGTGAGTAGAAGACACTCGGTGCGAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      157501 87 -    373274 AATAATTTTCAAGAGGTAACTTTATTTTTCTGAGACAGTATTATGGAGCGTCTGCAGCTGCTGTGAGTAGAAGACACTCGGTGCTAA
i cebCap1.NW_016108108v1   C 0 I 27
s aotNan1.NW_018494050v1       94788 87 -    285216 AATAATTTTCAAGAGGTAACTTTATTTTTCTGAGACAGTATTATGGAGCGTCTGCAGCTGCTGTGAGTAGAAGACACTCTGTGCTAA
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742            780919  0 +   2232465 I

a score=323459.000000
s hg38.chr6_GL000254v2_alt     55540 58 +   4827813 CGGGGGATACAAATTATTTAGAATACAG-TATACGACTTGAAATGGAAGgcgcctgtaa
s panTro5.chr6              29026422 58 + 175400573 TGGGGGATACAAATTATTTAGAATACAG-TATACGACTTGAAATGGAAGgcgcctgtaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29269967 58 + 173848474 TGGGGGATACAAATTATTTAGAATACAG-TATACGACTTGAAATGGAAGgcgcctgtaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069188 58 +   6154872 TGGGGGATACAAATTATTTAGAATACAG-TATACGACTTGAAATGGAAGgcgcctgtaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091333 58 + 122973662 TGGGGTATACAAATTATTTAGAATACTG-TATACGACTTGAAATGGAAGgcgcctgtaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204331 58 + 172585720 TAGGGGATATAAATTATTTAGAATACTG-TATACGACATGAAATGGAAGgcgcctgtaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28892824 58 - 170955103 TAGGGGATATAAATTATTTAGAATACTG-TATACGACATGAAATAGAAGgcgcctgtaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1864887 58 -   2996164 TAGGGAGTATAAATTATTTAGAATACTG-TATACGACATGAAATGGAAGgcgcctgtaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1759581 58 -   2157725 TAGGGGATATAAATTATTTAGAATACCG-TATACGACATGAAATGGAAGgcgcctgtaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28211810 58 -  71996105 TAGGGGATATAAATTATTTAGAATACTG-TATACGACATGAAATGGAAGgcgcctgtaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1873628 58 +   2316924 TAGGGGATATAAATTATTTAGAATACCG-TATACGACATGAAATGGAAGgcgcctgtaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1742630 58 -   3067355 TAGGGGATATAAATTATTTAGAATACTG-TATACGACATGAAATGGAAGgcgcctgtaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328090 27 - 171630274 CCGGGGAAAC-AATTCTTCAGAATACTG-------------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156344 27 -    375362 TGGGGGAGAC-AATTCTTCAAAATACTG-------------------------------
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1       94875 28 -    285216 TGGGGGAAAC-AATTCTTCAGAATACTGt------------------------------
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742            780919  0 +   2232465 I
e cebCap1.NW_016108108v1      157588 27 -    373274 I

a score=984878.000000
s hg38.chr6_GL000254v2_alt     55598 132 +   4827813 tcccagctactggggaggctgagccaggagaatc-cttgaacccgggaggcggagattgcactgagccgacatcgcgccactgcactccagcctgggcatcg-gagcgaaactcaatct-c---------------aaaaaaaa---aaaaaa----
s panTro5.chr6              29026480 132 + 175400573 tcccagctactggggaggctgagccaggagaatc-cttgaacccgggaggcggagattgcactgagccgacatcgcgccactgcactccagcctgggcatcg-gagcgaaactcaatct-c---------------aaaaaaaa---aaaaaa----
i panTro5.chr6             C 0 I 4
s panPan2.chr6              29270025 133 + 173848474 tcccagctactggggaggctgagccaggagaatc-cttgaacccgggaggcggagattgcactgagccgacatcgcgccactgcactccagcctgggcatcg-gagcgaaactcaatctac---------------aaaaaaaa---aaaaaa----
i panPan2.chr6             C 0 I 109
s gorGor5.CYUI01015250v1     5069246 132 +   6154872 tcccagctactggggaggctgagccaggagaatc-cttgaacccgggaggcggagattgcactgagccgacatcgcgctactgcactccagcctgggcatag-gagcgaaactcaatct-c---------------aaaaaaaa---aaaaaa----
i gorGor5.CYUI01015250v1   C 0 I 3
s nomLeu3.chr1a             74091391 132 + 122973662 tcccagctactggggaggctgagccaggagaatc-cttgaacccgggaggcagagattgcactgagccgagatcgcgccactgcactccagcctgggtatcg-gagtgaaactcaatct-c---------------aaaaaaaa---aaaaaa----
i nomLeu3.chr1a            C 0 I 20
s rheMac8.chr4              29204389 123 + 172585720 tcccagctactgaag---------caggagaatc-cttgaacccgggaggcggaggttgcagtgagccgagatcgcgccactgcactccagcctgggcgcct-gaggaaaactcaatct-c---------------aaaaaaaa---aaaaaa----
i rheMac8.chr4             C 0 I 3
s macFas5.chr4              28892882 123 - 170955103 tcccagctactgagg---------caggagaatc-cttgaacccgggaggcggaggttgcagtgagctgagatcgcgccactgcactccagcctgggcgcct-gaggaaaactcaatct-c---------------aaaaaaaa---aaaaaa----
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1     1864945 129 -   2996164 tcccagctactgagg---------caggagaatc-cttgaaccc-ggaggcggaggttgcagtgagccgagatcgcgccactgcactccagccggggcgcctggaggaaaactcaatct-c-aaaaaa--------aaaaaaaa---aaaaaa----
i macNem1.NW_012011356v1   C 0 I 3
s cerAty1.NW_012001495v1     1759639 126 -   2157725 tcccagctactgagg---------taggagaatc-cttgaacccgggaggcgga-gttgcagtgagccaagatcgcgccactgagctccagcctgggcgcct-gaggaaaactcaatct-c---aaaa--------aaaaaaaa---aaaaaa----
i cerAty1.NW_012001495v1   C 0 I 3
s chlSab2.chr17             28211868 121 -  71996105 tcccagctactgagg---------caggagaatc-cttgaacccgggaggcggaggttgcagtgagccgagatcgtgccactgcactccagcctgggcgcct-gaggaaaactcaatct-c-----------------aaaaaa---aaaaaa----
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012104165v1     1873686 130 +   2316924 tcccagctactgagg---------taggagaatc-cttgaacccgggaagcggaggttgcagtgagccaagatcgcgccactgcgctccagcctgggcgcct-gaggaaaactcaatct-caaaaaaa--------aaaaaaaa---aaaaaa----
i manLeu1.NW_012104165v1   C 0 I 3
s colAng1.NW_012115566v1     1742688 117 -   3067355 tcccagctactatgg---------caggagaatc-cttgaacccgggaggcagaggttgcagtgagccgagatcgcgccactgcactccagcctgggcgtcg-gaggaaaactc----------------------aaaaaaaa---aaaaaa----
i colAng1.NW_012115566v1   C 0 I 6054
s calJac3.chr4             171328117 152 - 171630274 tcccggctactgcggaggctgaggcaggagaatcacttcaacccgggaggcggaggttgctgtgagcgcagatcgcgccgctgaaccccagtgtgggcatca-gagccagtctccgtct-caaaaacacacacacaaaaaaaca---aaacaaaCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156371 155 -    375362 tcccagctactggggaggctgaggcaggagaatcacttgaacccacaaggcggaggttgcagtgagcgcagatcgcgccactgcactccagcgtgggcgtca-gagccagcctccgtct-caaaaacacataaaaaacaaaacaaacaaaCAAACAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      157615 147 -    373274 tcccagctactggggaggctgaggcaggagaatcacttgaacccgggaggtggaggttgcagtgagcgcagatcgcaccactgcactccagcgtgggcatca-gagccagtctccgtct-caaaaacacat-----aaaaaaca---aaacaaacaa
i cebCap1.NW_016108108v1   I 27 C 0
s aotNan1.NW_018494050v1       94903 146 -    285216 -cccagctactggggaggctgaggcaggaggatcacttcaacccggaaggcggaggttgcagtgagcgcagatcgcgccactgcactccagcgtgggcgtca-gagccaatctccgtct-caaaaacacac-----aaaaaaca---aaacaaacaa
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742            780919   0 +   2232465 I

a score=-15685.000000
s hg38.chr6_GL000254v2_alt     55730 1 +   4827813 -T
s panTro5.chr6              29026616 1 + 175400573 -T
i panTro5.chr6             I 4 C 0
s gorGor5.CYUI01015250v1     5069381 1 +   6154872 -T
i gorGor5.CYUI01015250v1   I 3 C 0
s nomLeu3.chr1a             74091543 1 + 122973662 -T
i nomLeu3.chr1a            I 20 C 0
s rheMac8.chr4              29204515 1 + 172585720 -T
i rheMac8.chr4             I 3 C 0
s macFas5.chr4              28893008 1 - 170955103 -T
i macFas5.chr4             I 3 C 0
s macNem1.NW_012011356v1     1865077 1 -   2996164 -a
i macNem1.NW_012011356v1   I 3 C 0
s cerAty1.NW_012001495v1     1759768 1 -   2157725 -T
i cerAty1.NW_012001495v1   I 3 C 0
s chlSab2.chr17             28211992 1 -  71996105 -T
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012104165v1     1873819 1 +   2316924 -T
i manLeu1.NW_012104165v1   I 3 C 0
s calJac3.chr4             171328269 1 - 171630274 A-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156526 1 -    375362 A-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      157762 1 -    373274 a-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       95049 1 -    285216 a-
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742            780919 0 +   2232465 I
e colAng1.NW_012115566v1     1742805 6054 -   3067355 I
e panPan2.chr6              29270158 109 + 173848474 I

a score=690845.000000
s hg38.chr6_GL000254v2_alt     55731 102 +   4827813 CACTTCCTAGGTTTCAGACTGTAAATAATTTATTTAATGTCAGCGCTTCATGGAAGACTTCACTGGAATATGCAACCAAAGCAGAGAGTG-ATGCATA-TATA--T
s panTro5.chr6              29026617 102 + 175400573 CACTTCCTAGGTTTCAGACTTTAAATAATTTATTTAATGTCAGCGCTTCATGGAAGACTTCACTGGAATATGCAACCAAAGCAGAGAGTG-ATGCata-tata--t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29270267 102 + 173848474 CACTTCCTAGGTTTCAGACTTTAAATAATTTATTTAATGTCAGCGCTTCATGGAAGACTTCACTGGAATATGCAACCAAAGCAGAGAGTG-ATGCata-tata--t
i panPan2.chr6             I 109 C 0
s gorGor5.CYUI01015250v1     5069382 102 +   6154872 CACTTCCTAGGTTTCAGACTTTAAAGAATTTATTTAATGTCAGCGCTTCATGGAAGACTTCACTGGAATATGCAACTAAAGGAGAGAGTG-ATGCATA-TATA--T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091544 102 + 122973662 TACTTCCTAGGTTTAAAACTTTAAATAATTTATTTAATGTCAGCGCCTCATGGAAGACTTCAGTGGAATATGTAACCAAAGGAGAGAGTG-ATGCACA-tata--t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204516  94 + 172585720 CACTTCCTAGGTTTAAGACTTTAAATAATTTA-TTAATGTCAGCGCTTCATGGAAGACTTCAGTGGAATATGAAACCAA-------AGTG-ATGCata-tata--c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28893009  94 - 170955103 CACTTCCTAGGTTTAAGACTTTAAATAATTTA-TTAATGTCAGCGCTTCATGGAAGACTTCAGTGGAATATGAAACCAA-------AGTG-ATGCata-tata--c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1865078  88 -   2996164 aaCATCCTAGG-TTAAGAC-TTAAATA--TTA-TTAATGTCAGCGCTTC--GGGAGACTTCAGT-GAATA-GAAACCAA-------AGTGAATGCATATTATA--C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1759769 102 -   2157725 CACTTCCTAGGTTTAAGACTTTAAATAATTTATTTAATGTCAGCGCTTCATGGAAGACTTCAGCGGAATATGAAACCAAAGGAGAGAGTG-ATGCata-tata--c
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28211993 102 -  71996105 CACTTCCTAGGTTTAAGACTTTAAATAATTTATTTAATGTCAGCGCTTCATGGAAGACTTCAGTGGAATATGAAACCAAAGGAGAGAGTG-ATGCata-tata--c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1873820 102 +   2316924 CACTTCCTAGGTTTAAGACTTTAAATAATTTATTTAATGTCAGCGCTTCATGGAAGACTTCAGTGGAATATGAAACCAAAGGAGAGAGTG-ATGCata-tata--c
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171328270  96 - 171630274 CACTTCCCAGGTTGAAGACTTTAAGCAATTTATGTAATGTCACCGCCTCATGGAAGACTTCAGCGGGGTGTGC-----ACGAAAGGAGTG-ATACACA-TATA---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156527 101 -    375362 CACTTCCTAAGTTAAAGACTTTAAATAATTTACGTAATGTCAACACCTCATGGAAGACCTCAGTGGACTATGCAACCAAAGGAGAGAGTG-ATACACA-TATA---
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      157763 102 -    373274 CACTTTCTAGGTTGAAGACTTTAAATAATTTATGTAATGTCAGCACCTCATGGAAGACTTCAGTGGACTATGCAACCAAAGGAGAGAGTG-GTACACA-TATAT--
i cebCap1.NW_016108108v1   C 0 I 4
s aotNan1.NW_018494050v1       95050 102 -    285216 CACTTCCTAGGTTGAAGACTTTAAATAATTTATGTAATGTCAGCGCCTCATGGAAGACTTCAGTGGACTATGCAACCAAAGGAAAGAGTG-ATACACA-TATA-T-
i aotNan1.NW_018494050v1   C 0 I 112
e otoGar3.GL873742            780919   0 +   2232465 I
e colAng1.NW_012115566v1     1742805 6054 -   3067355 I

a score=5005.000000
s hg38.chr6_GL000254v2_alt     55833 1 +   4827813 A
s panTro5.chr6              29026719 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29270369 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069484 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091646 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204610 1 + 172585720 a
i rheMac8.chr4             C 0 I 14
s macFas5.chr4              28893103 1 - 170955103 a
i macFas5.chr4             C 0 I 14
s macNem1.NW_012011356v1     1865166 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 I 34
s cerAty1.NW_012001495v1     1759871 1 -   2157725 a
i cerAty1.NW_012001495v1   C 0 I 10
s chlSab2.chr17             28212095 1 -  71996105 a
i chlSab2.chr17            C 0 I 4
s manLeu1.NW_012104165v1     1873922 1 +   2316924 a
i manLeu1.NW_012104165v1   C 0 I 4
e saiBol1.JH378348            156628 0 -    375362 C
e otoGar3.GL873742            780919 0 +   2232465 I
e aotNan1.NW_018494050v1       95152 112 -    285216 I
e cebCap1.NW_016108108v1      157865 4 -    373274 I
e calJac3.chr4             171328366 0 - 171630274 C
e colAng1.NW_012115566v1     1742805 6054 -   3067355 I

a score=6254.000000
s hg38.chr6_GL000254v2_alt     55834 17 +   4827813 TATATG--------------Cgtgtgtgtgt
s panTro5.chr6              29026720  7 + 175400573 tatata------------------------t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29270370 31 + 173848474 tatatatatatatatatatatatatatatgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069485  7 +   6154872 TAtgcg------------------------t
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091647 11 + 122973662 tatatg--------------------cgtgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204625 11 + 172585720 tacacg--------------------tatat
i rheMac8.chr4             I 14 I 8
s macFas5.chr4              28893118 11 - 170955103 tacacg--------------------tatat
i macFas5.chr4             I 14 I 8
s cerAty1.NW_012001495v1     1759882 11 -   2157725 tatatg--------------------tatat
i cerAty1.NW_012001495v1   I 10 I 20
s chlSab2.chr17             28212100 11 -  71996105 tatata--------------------tatat
i chlSab2.chr17            I 4 I 14
s manLeu1.NW_012104165v1     1873927 11 +   2316924 tatata--------------------tatat
i manLeu1.NW_012104165v1   I 4 I 10
e saiBol1.JH378348            156628  0 -    375362 C
e otoGar3.GL873742            780919  0 +   2232465 I
e aotNan1.NW_018494050v1       95152 112 -    285216 I
e cebCap1.NW_016108108v1      157865  4 -    373274 I
e calJac3.chr4             171328366  0 - 171630274 C
e colAng1.NW_012115566v1     1742805 6054 -   3067355 I
e macNem1.NW_012011356v1     1865167 34 -   2996164 I

a score=56689.000000
s hg38.chr6_GL000254v2_alt     55851 20 +   4827813 gtg--------------tgtgtgtgtgtgtgtgt
s panTro5.chr6              29026727 20 + 175400573 atg--------------cgtgtgtgtgtgtgtgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29270401 20 + 173848474 gtg--------------tgtgtgtgtgtgtgtgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069492 20 +   6154872 gtg--------------tgtgtgtgtgtgtgtgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091658 20 + 122973662 atg--------------tgtgcgtgtgtgtgtgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204644 20 + 172585720 ata--------------tgtgtgtgtgtgtgtgt
i rheMac8.chr4             I 8 C 0
s macFas5.chr4              28893137 20 - 170955103 ata--------------tgtgtgtgtgtgtgtgt
i macFas5.chr4             I 8 C 0
s macNem1.NW_012011356v1     1865201 20 -   2996164 gtg--------------tgtgtgtgtgagtgtgt
i macNem1.NW_012011356v1   I 34 C 0
s cerAty1.NW_012001495v1     1759913 20 -   2157725 gtg--------------tgtgtgtgtgtgtgtgt
i cerAty1.NW_012001495v1   I 20 C 0
s chlSab2.chr17             28212125 20 -  71996105 ACA--------------CGTGTGTGTGTGTGTGT
i chlSab2.chr17            I 14 C 0
s manLeu1.NW_012104165v1     1873948 34 +   2316924 ACAAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
i manLeu1.NW_012104165v1   I 10 C 0
s calJac3.chr4             171328366  5 - 171630274 -------------------TGCAC----------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156628  5 -    375362 -------------------TGCAC----------
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742            780919  0 +   2232465 I
e aotNan1.NW_018494050v1       95152 112 -    285216 I
e cebCap1.NW_016108108v1      157865  4 -    373274 I
e colAng1.NW_012115566v1     1742805 6054 -   3067355 I

a score=364159.000000
s hg38.chr6_GL000254v2_alt     55871 50 +   4827813 ATTACCTTTATCGGATTTTCAA----CAGC-AAAAAATTGGAGTTCTATACACCT
s panTro5.chr6              29026747 50 + 175400573 ATTACCTTTATCGGATTTTCAA----CAGC-AAAAAATTGGAGTTCTATACACCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29270421 50 + 173848474 ATTACCTTTATCGGATTTTCAA----CAGC-AAAAAATTGGAGTTCTATACACCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069512 50 +   6154872 ATTACCTTTATCGGATTTTCAA----CAGC-AAAAAAATGGAGTTCTATACACCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091678 50 + 122973662 attatCTTTATCGGATTTTCAA----CAGC-AAAAAATTGGAGTTCTATACACCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204664 50 + 172585720 AGTACCTTTATTGGATTTTCAA----CAGC-AAAAAATTGGAGTTCTATACACCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28893157 50 - 170955103 AGTACCTTTATTGGATTTTCAA----CAGC-AAAAAATTGGAGTTCTATACACCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1865221 48 -   2996164 AGTACCTTTATCGGATTTTCAA----CAGC-AAAAA--TGGAGTTCTATACACCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1759933 50 -   2157725 AGTACCTTTATCGGATTTTCAA----CAGC-AAAAAATTGGAGTTCTATACACCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28212145 50 -  71996105 ATTACCTTTATCGGATTTTCAA----CAGC-AAAAAATTGGAGTTCTATACACCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1873982 50 +   2316924 AGTACCTTTATCGGATTTTCAA----CAGC-AAAAAATTGGAGTTCTATACACCC
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171328371 54 - 171630274 ATTACCTTTATCGGATTTTCAAAAACCAGC-AAAAAATTGGAGATCTATACACCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156633 55 -    375362 ATTACCTTTATCGGATTTTCAAAAAACAGCAAAAAAATTGGAGATCTATACACCC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      157869 54 -    373274 ATTACCTTTATCGGATTTTCAAAAAACAGC-AAAATATTGGAGATCTATACACTC
i cebCap1.NW_016108108v1   I 4 C 0
e otoGar3.GL873742            780919  0 +   2232465 I
e aotNan1.NW_018494050v1       95152 112 -    285216 I
e colAng1.NW_012115566v1     1742805 6054 -   3067355 I

a score=189054.000000
s hg38.chr6_GL000254v2_alt     55921 21 +   4827813 TTCTGGGATTGGCATGCAAGT
s panTro5.chr6              29026797 21 + 175400573 TTCTGGGATTGGCATGCAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29270471 21 + 173848474 TTCTGGGATTGGCATGCAAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069562 21 +   6154872 TTCTGGGATTGGCATGCAAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091728 21 + 122973662 TTCTAGGATTGGCATACAAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204714 21 + 172585720 TTCTGGTATTGGCATGCAAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28893207 21 - 170955103 TTCTGGTATTGGCATGCAAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1865269 21 -   2996164 TTCTGGTATTGGCATGCAAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1759983 21 -   2157725 TTCTGGTATTGGCATGCAAGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28212195 21 -  71996105 TTCTGGTATTGGCATGCAAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1874032 21 +   2316924 TTCTGGTATTGGCATGCAAGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1748859 21 -   3067355 TTCTGGGATTGGCATGCAAGT
i colAng1.NW_012115566v1   I 6054 C 0
s calJac3.chr4             171328425 21 - 171630274 TTCTAGGATTGGCATGCAAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156688 21 -    375362 TTCTAGGGTTGGCATGCAAGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      157923 21 -    373274 TTCTAGGATTGGCATGCAAGT
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742            780919  0 +   2232465 I
e aotNan1.NW_018494050v1       95152 112 -    285216 I

a score=9100.000000
s hg38.chr6_GL000254v2_alt     55942 1 +   4827813 G
s panTro5.chr6              29026818 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29270492 1 + 173848474 G
i panPan2.chr6             C 0 M 522
s gorGor5.CYUI01015250v1     5069583 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091749 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204735 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28893228 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1865290 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1760004 1 -   2157725 G
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28212216 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1874053 1 +   2316924 G
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1748880 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            156709 1 -    375362 G
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      157944 1 -    373274 G
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742            780919 0 +   2232465 I
e aotNan1.NW_018494050v1       95152 112 -    285216 I
e calJac3.chr4             171328446 0 - 171630274 C

a score=35670.000000
s hg38.chr6_GL000254v2_alt     55943 7 +   4827813 TTG-TATA
s panTro5.chr6              29026819 7 + 175400573 TTG-TATA
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069584 7 +   6154872 TTG-TATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091750 7 + 122973662 TTG-TATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204736 7 + 172585720 TTG-TATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28893229 7 - 170955103 TTG-TATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1865291 8 -   2996164 TGGATATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1760005 8 -   2157725 TTGTTATA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28212217 7 -  71996105 TTG-TATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1874054 7 +   2316924 TTG-TATA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1748881 7 -   3067355 TTG-TATA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            156710 7 -    375362 TTG-TGTA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      157945 7 -    373274 TTG-TGTA
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742            780919 0 +   2232465 I
e aotNan1.NW_018494050v1       95152 112 -    285216 I
e calJac3.chr4             171328446 0 - 171630274 C
e panPan2.chr6              29270493 522 + 173848474 M

a score=16731.000000
s hg38.chr6_GL000254v2_alt     55950 3 +   4827813 AGG
s panTro5.chr6              29026826 3 + 175400573 AGG
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069591 3 +   6154872 AGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091757 3 + 122973662 AGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204743 3 + 172585720 AGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28893236 3 - 170955103 AGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1865299 3 -   2996164 AGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1760013 3 -   2157725 AGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28212224 3 -  71996105 AGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1874061 3 +   2316924 AGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1748888 3 -   3067355 AGG
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      157952 3 -    373274 AGG
i cebCap1.NW_016108108v1   C 0 I 11
e saiBol1.JH378348            156717 0 -    375362 C
e otoGar3.GL873742            780919 0 +   2232465 I
e aotNan1.NW_018494050v1       95152 112 -    285216 I
e calJac3.chr4             171328446 0 - 171630274 C
e panPan2.chr6              29270493 522 + 173848474 M

a score=95124.000000
s hg38.chr6_GL000254v2_alt     55953 24 +   4827813 GTTGTATCAg-ccgagcgctgtgtc
s panTro5.chr6              29026829 24 + 175400573 GTTGTATTAg-ccgggcgctgtgtc
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069594 24 +   6154872 GTTGTATTAg-ccgggcgctgtatc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091760 25 + 122973662 GTTGTATTAGCccaggcgctgtggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204746 24 + 172585720 GTTGTATTAg-ccgggcgctgtggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28893239 24 - 170955103 GTTGTATTAg-ccgggcgctgtggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1865302 24 -   2996164 TTGTTATTAC-GGgggcgctgtggc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1760016 24 -   2157725 GTTGTATTAg-ccggccgctgtggc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28212227 24 -  71996105 GTTGTATTAg-ctgggcgctgtggc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1874064 24 +   2316924 GTTGTATTAg-ccgggcactgtggc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1748891 24 -   3067355 GTTGTATTAg-ccgggcgctgtggc
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            156717  0 -    375362 C
e otoGar3.GL873742            780919  0 +   2232465 I
e aotNan1.NW_018494050v1       95152 112 -    285216 I
e cebCap1.NW_016108108v1      157955 11 -    373274 I
e calJac3.chr4             171328446  0 - 171630274 C
e panPan2.chr6              29270493 522 + 173848474 M

a score=1519907.000000
s hg38.chr6_GL000254v2_alt     55977 291 +   4827813 ttacgcctgtaatcccagcactttgggaggccgaggcgggccgatcacctgaggtcgggagttcgagaccagcctgaccaacatggaga-aactccgtctctactaaaaatacaaaattagccaggcgtggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaactcaggaggcggaggttgcggtgagccgagttcgctccattgcact-cagcctgggcaacaagagtgaaactccgtcaaa-aaataaataaataaac-aaaaTAAGG
s panTro5.chr6              29026853 292 + 175400573 ttacgcctgtaatcccagcactttgggaggccgaggcgggccgatcacctgaggtcgggagttcgagaccagcctgacaaacatggaga-aactccgtctctactaaaaatacaaaattagccaggcgtggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaactcaggaggcggaggttgcggtgagccgagttcgctccattgcact-cagcctgggcaacaagagtgaaactccgtcaaataaataaataaataaac-aaaaTAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29271016 292 + 173848474 ttacgcctgtaatcccagcactttgggaggccgaggcgggccgatcacctgaggtcgggagttcgagaccagcctgaccaacatggaga-aactccatctctactaaaaatacaaaattagccaggcgtggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaactcaggaggcggaggttgcggtgagccgagttcgctccattgcact-cagcctgggcaacaagagtgaaactccgtcaaataaataaataaataaac-aaaaTAAGG
i panPan2.chr6             M 522 C 0
s gorGor5.CYUI01015250v1     5069618 292 +   6154872 ttacgcctgtaatcccagcactttgggaggccgaggcgggccgatcacctgaggtcgggagttccagaccagcctgaccaacatggaga-aactccgtctcttctaaaaatacaaaattagccaggcgtggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaactcaggaggcggaggttgcggtgagccgagttcgctccattgcact-cagcctgggcaacaagagtgaaactccgtcaaaaaaataaataaataaac-aaaaTAAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74091785 293 + 122973662 ttacgcctgtaatcccagcattttgggaggccgaatcgggccgatcacctgaggtcgggagttcgagaccagcctgacaaacatggaga-aactccgtctctactaaagatacaaaattagccaggcgtggtggcgcatgcctataatcccagctactcgggaggctgaggcaggagaatcgcttgaactcaggaggcggaggttgcggtgagccgagttcgctccattgcactccagcctgggcaacaagagtgaaactccgtcaaaaaaataaattaaaaaaa-taaaTAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29204770 294 + 172585720 taaagcctctaatcccagccctttgggaggccgaggctgagggatcacctgaggtcgggagtttgagaccagcctgaccaacatggaga-aagtccgtctgtactaaaaatacaaaattagccaggcgtggtggtgcctgcctgtaatcccagctattcgggaggctgaggcgggagaatcacttgaacccaggaggcggaggttgcagtgagccgagttcgctccattgcactccatcctggacaacaagagtgaaactccaaggaaaaaataagtaaataaataaaaaTAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28893263 294 - 170955103 taaagcctctaatcccagccctttgggaggccgaggctgagggatcacctgaggtcgggagtttgagaccagcctgaccaacatggaga-aagtccgtctgtactaaaaatacaaaattagccaggcgtggtggtgcctgcctgtaatcccagctattcgggaggctgaggcgggagaatcacttgaacccaggaggcggaggttgcagtgagccgagttcgctccattgcactccatcctggacaacaagagtgaaactccaaggaaaaaataagtaaataaataaaaaTAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1865326 286 -   2996164 taaagcctctaatcccagccctt--ggaggccgaggctga-ggatcacctgaggt--ggagtttgagaccagcctg---aacatggaga-aagtccgtctctactaaaaatacaaaattagccaggcgtggtggtgcctgcctgtaatcccagctattcgggaggctgaggcgggagaatcacttgaacccaggaggcggaggttgcagtgagccgagttcgctccattgcactccatcctggacaacaagagtgaaactccaaggaaaaaataagtaaataaataaaaaTAAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1760040 290 -   2157725 taacgcctgtaatcccagccctttgggatgctgaggctaagggatcacctgaggtcgggagtttgagaccagcatgaccaacatggagagaagtccgtctgtactaaaaatacaaaattagctaggcgtggtggtgcctgcctgtaatcccagctattcgggaggctgaggc-ggagaatcgcttgaacccaggaggcggaggttgcagtgagccgagttcg--ccattgcactccatcctggacaacaagagtgaaactccga-gaaaaaataaataaataaat-aaaaTAAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28212251 292 -  71996105 taacgtctgtaatcccagccctttgggaggc-gaggctgggggatcacctgaggtcgggagtttgagaccagcctgaccaacacggaga-aagtccgtctgtactaaaaatacaaaattagccaggcgtggtggtgcctgcctgtaatcccagctattcaggaggctgaggcgggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagttcgctccattgcactccatcctggacaacaagagtgaaactccgag-aaaaaataaataaataaataaaaaTAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1874088 294 +   2316924 taacgcctgtaatcccagccctttgggaggctgaggctaagggatcatctgaggtcgggagtttgagaccagcctgaccaacatggaga-aagtccgtctgtactaaaaatacaaaattagctaggcgtggtggtgccagcctgtaatcccagctattcgggaggctgaggcgggagaatcacttgaacccaggaggcagaggttgcagggagccgagttcgctccattgcactccatcctggacaacaagagtgaaactccgagaaaaaaataaataaataaataaaaaTAAGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1748915 292 -   3067355 taacgcctgtaatcccagccctttgggaggccgaggctgggggatcacctgaggtcgggactttgagaccagcctgaccaacatggaga-aagtccgtctgtattaaaaatacaaaattagccaggtgtggtggtgcctgcctgtaatcccagctactcgggaggttgaggcaggagaatagcttgaacccaggaggcagaggtggtagtgagccgagttcgctccattgcactccatcctgggcaacaagagtgaaactccgag--aaaaataaataaataaataaaaaTAAGG
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            156717   0 -    375362 C
e otoGar3.GL873742            780919   0 +   2232465 I
e aotNan1.NW_018494050v1       95152 112 -    285216 I
e cebCap1.NW_016108108v1      157955  11 -    373274 I
e calJac3.chr4             171328446   0 - 171630274 C

a score=52692.000000
s hg38.chr6_GL000254v2_alt     56268 8 +   4827813 GTTCTATT
s panTro5.chr6              29027145 8 + 175400573 GTTCTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29271308 8 + 173848474 GTTCTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069910 8 +   6154872 GTTCTATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74092078 8 + 122973662 GTTCTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29205064 8 + 172585720 GTTCTATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28893557 8 - 170955103 GTTCTATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1865612 8 -   2996164 GTTCTATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1760330 8 -   2157725 GTTCTATT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28212543 8 -  71996105 GTTCTATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1874382 8 +   2316924 GTTCTATT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1749207 8 -   3067355 GTTCTATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328446 8 - 171630274 GCTCTGTA
i calJac3.chr4             C 0 C 0
e saiBol1.JH378348            156717 0 -    375362 C
e otoGar3.GL873742            780919 0 +   2232465 I
e aotNan1.NW_018494050v1       95152 112 -    285216 I
e cebCap1.NW_016108108v1      157955 11 -    373274 I

a score=30773.000000
s hg38.chr6_GL000254v2_alt     56276 15 +   4827813 AGGCAAAACT----------gaaag
s panTro5.chr6              29027153 15 + 175400573 AGGCAAAACT----------gaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29271316 15 + 173848474 AGGCAAAACT----------gaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069918 15 +   6154872 AGGCAAAACT----------gaaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74092086 15 + 122973662 AGGCAAAACT----------Gaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29205072 10 + 172585720 AGGCAAAACT---------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28893565 10 - 170955103 AGGCAAAACT---------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1865620 10 -   2996164 AGGCAAAACT---------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1760338 15 -   2157725 AGGCAAAACTAAAAC----------
i cerAty1.NW_012001495v1   C 0 I 500
s chlSab2.chr17             28212551  9 -  71996105 A-GTAAAACT---------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1874390 10 +   2316924 AGGCAAAACT---------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1749215 15 -   3067355 AGGCAAAACT-----AAAAC-----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328454 14 - 171630274 ACGCAGAACT----------GATT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156717 14 -    375362 AGGCAGAACT----------GATT-
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742            780919  0 +   2232465 I
e aotNan1.NW_018494050v1       95152 112 -    285216 I
e cebCap1.NW_016108108v1      157955 11 -    373274 I

a score=20352.000000
s hg38.chr6_GL000254v2_alt     56291 8 +   4827813 aaagaaag
s panTro5.chr6              29027168 8 + 175400573 aaagaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29271331 8 + 173848474 aaagaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069933 8 +   6154872 aaagaaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74092101 8 + 122973662 aaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29205082 4 + 172585720 ----AAAA
i rheMac8.chr4             C 0 I 4
s macFas5.chr4              28893575 4 - 170955103 ----AAAA
i macFas5.chr4             C 0 I 4
s macNem1.NW_012011356v1     1865630 4 -   2996164 ----AAAA
i macNem1.NW_012011356v1   C 0 I 4
s chlSab2.chr17             28212560 4 -  71996105 ----AAAA
i chlSab2.chr17            C 0 I 4
s manLeu1.NW_012104165v1     1874400 4 +   2316924 ----AAAA
i manLeu1.NW_012104165v1   C 0 I 4
s colAng1.NW_012115566v1     1749230 6 -   3067355 --TGAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328468 8 - 171630274 AACGAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156731 4 -    375362 ----AAAA
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742            780919 0 +   2232465 I
e aotNan1.NW_018494050v1       95152 112 -    285216 I
e cebCap1.NW_016108108v1      157955 11 -    373274 I
e cerAty1.NW_012001495v1     1760353 500 -   2157725 I

a score=-4821.000000
s hg38.chr6_GL000254v2_alt     56299  4 +   4827813 aaa------a
s panTro5.chr6              29027176 10 + 175400573 aaagaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29271339  3 + 173848474 aa-------a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069941  3 +   6154872 aa-------a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74092109  1 + 122973662 ---------a
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171328476  4 - 171630274 ------AAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156735  4 -    375362 ------AAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      157966  4 -    373274 ------AAAA
i cebCap1.NW_016108108v1   I 11 C 0
e otoGar3.GL873742            780919  0 +   2232465 I
e aotNan1.NW_018494050v1       95152 112 -    285216 I
e colAng1.NW_012115566v1     1749236  0 -   3067355 C
e manLeu1.NW_012104165v1     1874404  4 +   2316924 I
e chlSab2.chr17             28212564  4 -  71996105 I
e cerAty1.NW_012001495v1     1760353 500 -   2157725 I
e macNem1.NW_012011356v1     1865634  4 -   2996164 I
e macFas5.chr4              28893579  4 - 170955103 I
e rheMac8.chr4              29205086  4 + 172585720 I

a score=8281.000000
s hg38.chr6_GL000254v2_alt     56303 1 +   4827813 a
s panTro5.chr6              29027186 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29271342 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069944 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74092110 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29205090 1 + 172585720 A
i rheMac8.chr4             I 4 C 0
s macFas5.chr4              28893583 1 - 170955103 A
i macFas5.chr4             I 4 C 0
s macNem1.NW_012011356v1     1865638 1 -   2996164 A
i macNem1.NW_012011356v1   I 4 C 0
s cerAty1.NW_012001495v1     1760853 1 -   2157725 A
i cerAty1.NW_012001495v1   I 500 C 0
s chlSab2.chr17             28212568 1 -  71996105 A
i chlSab2.chr17            I 4 C 0
s manLeu1.NW_012104165v1     1874408 1 +   2316924 A
i manLeu1.NW_012104165v1   I 4 C 0
s calJac3.chr4             171328480 1 - 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156739 1 -    375362 A
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      157970 1 -    373274 A
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742            780919 0 +   2232465 I
e aotNan1.NW_018494050v1       95152 112 -    285216 I
e colAng1.NW_012115566v1     1749236 0 -   3067355 C

a score=42990.000000
s hg38.chr6_GL000254v2_alt     56304 8 +   4827813 aaaaaaaC
s panTro5.chr6              29027187 8 + 175400573 aaaaaaaC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29271343 8 + 173848474 aaaaaaCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069945 8 +   6154872 aaaaaagC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74092111 8 + 122973662 aaaaaaaC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29205091 8 + 172585720 AAAACAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28893584 8 - 170955103 AAAACAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1865639 8 -   2996164 AAAACAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1760854 8 -   2157725 AAAAGAAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28212569 8 -  71996105 AAAAGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1874409 8 +   2316924 AAAAGAAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1749236 6 -   3067355 --AAGAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328481 8 - 171630274 AGAAACGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156740 8 -    375362 AAAAAAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      157971 8 -    373274 AAAAAAGA
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1482011 8 -   2232465 AAAATAAG
i otoGar3.GL873742         I 2379 C 0
e aotNan1.NW_018494050v1       95152 112 -    285216 I

a score=3136785.000000
s hg38.chr6_GL000254v2_alt     56312 309 +   4827813 CCtgccgaaacccgggatcgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggcTTCC-CGAATTTGTTGTTTTAGGTGTTTCTTCAAAATATAAAAAC--TCATTTGTAGGGTCAGTATATCTTCCA-------A-----TTCTGTTGTCTTCAATATCACCTGTCATTCACTCACCCCTTCAC---CCCC-AAAATATAGATTCTTCCCCAATTTATGTCTGAAAACAGGACCCAATTTTAAGGACAATGAATGGGTTAGCAAAAGCCAGGGAAAGAAAAGGCAAAAATGAAGAATAGAGCAAAG
s panTro5.chr6              29027195 309 + 175400573 CCtgccaaaacccgggatcgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggcTTCC-CGAACTTGCTGTTTTAGGTGTTTCTTCAAAATATAAAAAC--TCATTTGTAGGGTCAGTATATCTTCCA-------A-----TTCTGTTGTCTTCAATATCACCTGTCATTCACTCACCCCTTCAC---ACCC-AAAATATAGATTCTTCCCCAATTTATGTCTGAAAACAGGACCCAATTTTAAGGACAATGAATGGGTTAGCAAAAGCCAGGGAAAGAAAAGGCAAAGATGAAGAATAGAGCAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29271351 309 + 173848474 CCtgccgaaacccgggatcgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggcTTCC-CGAACTTGTTGTTTTAGGTGTTTCTTCAAAATATAAAAAC--TCATTTGTAGGGTCAGTATATCTTCCA-------A-----TTCTGTTGTCTTCAATATCACCTGTCATTCACTCACCCCTTCAC---CCCC-AAAATATAGATTCTTCCCCAATTTATGTCTGAAAACAGGAGCCAATTTTAAGGACAATGAATGGGTTAGCAAAAGCCAGGGAAAGAAAAGGCAAAGATGAAGAATAGAGCAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5069953 295 +   6154872 C--GCCGA------------aaccagggacctttagatcttcagtctaacgctctcccagctgagctatttcggcTTCC-CGAACTTGTTGTTTTAGGTGTTTCTTCAAAATATAAAAAC--TCATTTGTAGGGTCAGTATATCTTCCA-------A-----TTCTGTTGTCTTCAATATCACCTGTCATTCACTCACCCCTTCAC---CCCC-AAAATATAGATTCTTCCCCAATTTATGTCTGAAAACAGGACCCAATTTTAAGGACAATGAATGGGTCAGCAAAAGCCAGGGAAAGAAAAGGCAAAGGTGAAGAATAGAGCAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74092119 312 + 122973662 CCtgccgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggcTCCCTTGAACTTGTTCTTTTAGCTATTTCTTCAAAATATAAAAACTGTCATTTGTAGGGTCAGTATATCTTCCA-------A-----TTCTGTTGTCTTCAATATCACCTGTCATTCACTCACCCCTTCAC---CCCC-AAAATACAGATTCTTCTCCAATTTATGTCTGAAAATAGGACCCAATTTTAAAGACAATGAATGGGTTAGCAAAAGCCAGGGAAAGAAAAGGCAAAGGTGAAGAATAGAGCAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29205099 311 + 172585720 CCtgccgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggcTGCTTTGAGCCTATTCTTTTAGCTATTTCTTCAAAATAT-AAAACTGTCATTTGTAGGGTCAGTATATCTTCCA-------G-----TTCTGTTGTCTTCAATATCCCCTGTCATTCACTCACCCCTTCAC---CCCC-AAAATATAGATTCTGCTCCAATTTATGTCTGAAAATAGGACCCAATTTTAAGGACAATGAATGGGTTAGCAAAAGCCGGGGAAAGAAAAGGCAAAGGTGAAGAATAGAGCAAAG
i rheMac8.chr4             C 0 I 7132
s macFas5.chr4              28893592 311 - 170955103 CCtgccgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggcTGCTTTGAGCCCATTCTTTTAGCTATTTCTTCAAAATAT-AAAACTGTCATTTGTAGGGTCAGTATATCTTCCA-------G-----TTCTGTTGTCTTCAATATCCCCTGTCATTCACTCACCCCTTCAC---CCCC-AAAATATAGATTCTGCTCCAATTTATGTCTGAAAATAGGACCCAATTTTAAGGACAATGAATGGGTTAGCAAAAGCCGGGGAAAGAAAAGGCAAAGGTGAAGAATAGAGCAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1865647 311 -   2996164 CCtgccgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggcTGCTTTGAACCTGTTCTTTTAGCTATTTCTTCAAAATAT-AAAACTGTCATTTGTAGGGTCAGTATATCTTCCA-------G-----TTCTGTTGTCTTCAATATCCCCTGTCATTCACTCACCCCTTCAC---CCCC-AAAATATAGATTCTGCTCCAATTTATGTCTGAAAATAGGACCCAATTTTAAGGACAATGAATGGGTTAGCAAAAGCCGGGGAAAGAAAAGGCAAAGGTGAAGAATAGAGCAAAG
i macNem1.NW_012011356v1   C 0 I 10399
s cerAty1.NW_012001495v1     1760862 311 -   2157725 CCtgccgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggcTGCTTTAAGTCTCTTCTTTTAGCTATTTCTTCAAAATAT-AAAACTGTCATTTGTAGGGTCAGTATATCTTCCA-------G-----TTCTGTTGTCTTCAATATCCCCTGTCATTCACTCACCCCTTCAC---CCCC-AAAATATAGATTCTGCTCCAATTTATGTCTGAAAATAGGACCCAATTTTAAGGACAATGAATGGGTTAGCAAAAGCCGGGGAAAGAAAAGGCAAAGGTGAAGAATAGAGCAAAG
i cerAty1.NW_012001495v1   C 0 I 5036
s chlSab2.chr17             28212577 311 -  71996105 CCtgccgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcagcTGCTTTGAGCCTATTCTTTTAGCTATTTCTTCAAAATAT-AAAACTGTCATTTGTGGGGTCAGTATATCTTCCA-------G-----TTCTGTTGTCTTCAATATCCCCTGTCATTCACTCACCCCTTCAC---CCCC-AAAATATGGATTCTGCTCCAATTTATATCTGAAAATAGGACCCAGTTTTAAGGACAATGAATGGGTTAGCAAAAGCCGGGGAAAGAAAAGGCAAAGATGAAGAATAGAGCAAAG
i chlSab2.chr17            C 0 I 6789
s manLeu1.NW_012104165v1     1874417 311 +   2316924 CCtgccgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggcTGCTTTAAGCCTGTTCTTTTAGCTATTTCTTCAAAATAT-AAAACTGTCATTTGTAGGGTCAGTATATCTTCCA-------G-----TTCTGTTGTCTTCAATATCCCCTGTCATTCACTCACCCCTTCAC---CCCC-AAAATATAGATTCTGCTCCAATTTATGTCTGAAAATAGGACCCAATTTTAAGGACAATGAATGGGTTAGCAAAAGCCGGGGAAAGAAAAGGCAAAGGTGAAGAATAGAGCAAAG
i manLeu1.NW_012104165v1   C 0 I 8075
s colAng1.NW_012115566v1     1749242 313 -   3067355 CCtgccaaaacccgggattgaactagggccctttagatcttcagtctaacgctctcccaactgaactatttcggcTGCTCTGAGTCTAGCCTTTTAGCTCTTTCTTCAAAATATAAAAACTGTCATTTGTAGGGTCAGCATATCTTCCA-------A-----TTCTGTTGTCTTCAATATCCCCTGTCATTCACTCACCCCTTCAC---CCCCAAAAATATAGATTCTGCTCCAATTTATGTCTGAAAATAGGATCCAATTTTAAGGACAATGAATGGGTTAGCAAAAGCTGGGGAAAGAAAAGGCAAAGGTGAAGAATAGAGCAAAG
i colAng1.NW_012115566v1   C 0 I 6713
s calJac3.chr4             171328489 317 - 171630274 CCtgccgaaacccgggatcgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggcTACTCTGAAATGATTCTTTTAGCCATTGCTTCAAAACATAAAACCTGTCATTTGTAGGGTCAGTGTATCTTCCAATGCCTCA-----TTCTGTTGTCTTCAATATTACCCGTCATATACTCCTCCATTCAC---CCCA-AAAATACAGATTCTGCTCCGATTTATGTCTGAAAATAGGACCCACTTTTAAAGACAATGACTGGGTTAGCAAAAGTCGAGGGAAAAAAAGGCAAAGGC--AGACTAGGTCAAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156748 320 -    375362 CCtgccgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggcTCCCCTGGAATCGCCCTTTCAGCTATTTCTTCAAAATGTAAAAACTGTCATTTGTAGGGTCAATCTATCTTTCAATACCTAA-----TTCTGTTGTCTTTAATATTACCCATCATTTACTCATCCATTCACTCATCCA-AAAATATAGATTCTGCTCCGATTTATGTCTGAAAATAGGACCCAATTTTAAAGACAATGACTGGGTTAGCAAAAGTCGA--GAAAAAAAGGCAAAGGCAAAGAATAAGTCGAAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      157979 319 -    373274 CCtgccgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggcTCCTCTGAAACTATCCTTTCAGCTATTTCTTCAAAATGTAAAAACTGTCATTTGTAGGGTCAATATATTTTCCAATGCATAA-----TTCTGTTGTCTTCAATATTACGCATCATTTACTCATCCATTCAC---CCCA-AAAATATAGATTCTGCTACGATTTATGTCTGAAAATAGGACCCAATTTTAAAGACAATGACTGGGTTAGCAAAAGTCGAGGGGAAAAAAGGCAAAGGCAAAGAATAGGTCAAAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       95264 319 -    285216 CCtgccgaaacccgggatcgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggcTACTCTGAAGTCGTCCTTTTAGTTATTTCTTCAAAATGTAAAAACTGTCATTTGTAGGATCAGTATATCTTCCAACGCCTAA-----TTCTGTTTTCTTCAATATTACCCGTCATTTACTCATCCATTCAC---CCCA-AAAATATAGATTCTGCTCCGATTTATGTCTGAAAATAGGATCCAATTTTAAAGACAATGACTGGGTTAGCAAAAGTCGAGGGAAAAAAAGGCAAAGGCAAAGAATAGGTCAAAG
i aotNan1.NW_018494050v1   I 112 C 0
s otoGar3.GL873742           1482019 290 -   2232465 TCtgccgaaacccgggatcgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggcTGACATGAAGAGGTTCTTTAAGGCATTCTTTCAAAATATTAAAACTTTCATTTGTAGGGTCAGCCCATATTTCA-------AGTGTCTTTTACTTTTTTCAGTATCACTTG-----------------------CCAA-AAAATATGAATTCAACTACTATGTGTATCCGAAAATAGGATCCAATTTTGAAGGC--TGAATGAGCCGGTTGAGAACGGGTAAAAAAGGGG-----GGGCAGAATGGGTAAAAG
i otoGar3.GL873742         C 0 C 0

a score=4190.000000
s hg38.chr6_GL000254v2_alt     56621 1 +   4827813 T
s panTro5.chr6              29027504 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29271660 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5070248 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74092431 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28893903 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s calJac3.chr4             171328806 1 - 171630274 C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            157068 1 -    375362 C
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      158298 1 -    373274 C
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       95583 1 -    285216 C
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482309 1 -   2232465 C
i otoGar3.GL873742         C 0 C 0
e colAng1.NW_012115566v1     1749555 6713 -   3067355 I
e manLeu1.NW_012104165v1     1874728 8075 +   2316924 I
e chlSab2.chr17             28212888 6789 -  71996105 I
e cerAty1.NW_012001495v1     1761173 5036 -   2157725 I
e macNem1.NW_012011356v1     1865958 10399 -   2996164 I
e rheMac8.chr4              29205410 7132 + 172585720 I

a score=12376.000000
s hg38.chr6_GL000254v2_alt     56622 1 +   4827813 A
s panTro5.chr6              29027505 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29271661 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5070249 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74092432 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29212542 1 + 172585720 A
i rheMac8.chr4             I 7132 C 0
s macFas5.chr4              28893904 1 - 170955103 A
i macFas5.chr4             C 0 I 7138
s macNem1.NW_012011356v1     1876357 1 -   2996164 A
i macNem1.NW_012011356v1   I 10399 C 0
s cerAty1.NW_012001495v1     1766209 1 -   2157725 A
i cerAty1.NW_012001495v1   I 5036 C 0
s chlSab2.chr17             28219677 1 -  71996105 A
i chlSab2.chr17            I 6789 C 0
s manLeu1.NW_012104165v1     1882803 1 +   2316924 A
i manLeu1.NW_012104165v1   I 8075 C 0
s colAng1.NW_012115566v1     1756268 1 -   3067355 A
i colAng1.NW_012115566v1   I 6713 C 0
s calJac3.chr4             171328807 1 - 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            157069 1 -    375362 A
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      158299 1 -    373274 A
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       95584 1 -    285216 A
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482310 1 -   2232465 A
i otoGar3.GL873742         C 0 C 0

a score=681595.000000
s hg38.chr6_GL000254v2_alt     56623  82 +   4827813 ---------AGAACATGCTCCCCTACATGGTCACTGC------------------------TCAGAATACCAAGGGAATTCAAAAGAAAATTTTCTAGGCTTTTC-----CTTTTCTCTG
s panTro5.chr6              29027506  78 + 175400573 ---------GGAACATGCTCCCCTACATGTTC----C------------------------TCAGAATACCAAGGGAATTCAAAAGAAAATTTTCTAGGCTTTTC-----CTTTTCTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29271662  82 + 173848474 ---------GGAACATGCTCCCCTACATGGTCACTGC------------------------TCAGAATACCAAGGGAATTCAAAAGAAAATTTTCTAGGCTTTTC-----CTTTTCTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5070250  81 +   6154872 ---------AGAACATGCTCCCCTACATGGTCACTGC------------------------TCAGAATACCAAGGGAATTCAAAAGAAAATTTTCTAGGCTTTTC-----CTTTTCTGT-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74092433  82 + 122973662 ---------AGAACATGCTCCCCTACATGGTCACTGC------------------------TCAGAATACCAAGGGAATTCAAAAGAAAATTTTCTAGGCTTTTC-----CTTTTCTCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29212543  87 + 172585720 ---------AGAACATGTTCTCCAACTTGGTCACTGC------------------------TCAGAATACCAAGGGAATTCAACAGAAAAATTTCTAGACTTTTCAAAATCTTTTCTCTT
i rheMac8.chr4             C 0 I 5
s macFas5.chr4              28901043  87 - 170955103 ---------AGAACATGTTCTCCAACTTGGTCACTGC------------------------TCAGAATACCAAGGGAATTCAACAGAAAAATTTCTAGACTTTTCAAAATCTTTTCTCTT
i macFas5.chr4             I 7138 I 5
s macNem1.NW_012011356v1     1876358  87 -   2996164 ---------AGAACATGTTCTCCAACTTGGTCACTGC------------------------TCAGAATACCAAGGGAATTCAACAGAAAAATTTCTAGACTTTTCAAAATCTTTTCTCTT
i macNem1.NW_012011356v1   C 0 I 5
s cerAty1.NW_012001495v1     1766210  87 -   2157725 ---------AGAACATGTTCTCCAACATGGTCACTGC------------------------TCAGAATACCAAGGGAATTCAACAGAAAAATGTCTAGGCTTTTCAAAACCTTTTCTCTT
i cerAty1.NW_012001495v1   C 0 I 9
s chlSab2.chr17             28219678  87 -  71996105 ---------AGAACATGTTCTCCAACATGGTCACTGC------------------------TCAGAATACCAAGGGAATTCAACAGAAAAATTTCTAGGCTTTTCAAAACCTTTTCTCTT
i chlSab2.chr17            C 0 I 5
s manLeu1.NW_012104165v1     1882804  87 +   2316924 ---------AGAACATGTTCTCCAACATGGTCACTGC------------------------TCAGAATACCAAGGGAATTCAACAGAAAAATTTCTAGGCTTTTCAAAACCTTTTCTCTT
i manLeu1.NW_012104165v1   C 0 I 5
s colAng1.NW_012115566v1     1756269  87 -   3067355 ---------AGAACATGTTCCCCAACATGGTCACTGC------------------------TCAGAATACCAAGGGAATTCAACAGAAGAATTTCTAGGCTTTTCAAAACCTTTTCTCTT
i colAng1.NW_012115566v1   C 0 I 5
s calJac3.chr4             171328808  81 - 171630274 ---------GGAAGGCGCCCCCC-ACAAGGCCACTGC------------------------TCAGAAAACTAATGGAATTCAAAAGAATAGTTTCTAGGCTTTTC-----CTTTTCTCTT
i calJac3.chr4             C 0 I 5
s saiBol1.JH378348            157070  82 -    375362 ---------GTAAGGTGCCCCCCTACAAGGTCACTGC------------------------TCAGAAAACTAACGGAATTCAAAAGAATATTTTCTAGGCTTTTC-----CTTTTGTCTT
i saiBol1.JH378348         C 0 I 5
s cebCap1.NW_016108108v1      158300  82 -    373274 ---------GGAAGGTGCCCCCCTACAAGGTCACTGC------------------------TCAGAAAACTAACGGAATTCAAAAGAATATTTTCTAGTCTTTTC-----CTTTTCTCTT
i cebCap1.NW_016108108v1   C 0 I 5
s aotNan1.NW_018494050v1       95585  81 -    285216 ---------GGAAGGCGCTCCCT-ACAAGGCCACTGC------------------------TCGGAAAACTAATGGGATTCAGAAGAATATTTTCCAGGCTTTTC-----CTTTTCTCTT
i aotNan1.NW_018494050v1   C 0 I 5
s otoGar3.GL873742           1482311 108 -   2232465 AAATATTCTTGAATATGTTTTCATGTTTGGTCATCTCCGGCTGTTTTACGACCCAAATACTTCAGAAAACTAAGGACATTCAAGTGAAATTATTC----CTATTC-----CGTTTCT---
i otoGar3.GL873742         C 0 C 0

a score=68205.000000
s hg38.chr6_GL000254v2_alt     56705 13 +   4827813 GG---------------------CTCTTGTTTTT
s panTro5.chr6              29027584 13 + 175400573 GG---------------------CTCTTGTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29271744 13 + 173848474 GG---------------------CTCTTGTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5070331 13 +   6154872 GG---------------------CTCTTGTTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74092515 13 + 122973662 GG---------------------CTCTTGTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29212635 13 + 172585720 GG---------------------CTCTTGTTTTT
i rheMac8.chr4             I 5 C 0
s macFas5.chr4              28901135 13 - 170955103 GG---------------------CTCTTGTTTTT
i macFas5.chr4             I 5 C 0
s macNem1.NW_012011356v1     1876450 13 -   2996164 GG---------------------CTCTTGTTTTT
i macNem1.NW_012011356v1   I 5 C 0
s chlSab2.chr17             28219770 13 -  71996105 GG---------------------CTCTTGTTTTT
i chlSab2.chr17            I 5 C 0
s manLeu1.NW_012104165v1     1882896 13 +   2316924 GG---------------------CTCTTGTTTTT
i manLeu1.NW_012104165v1   I 5 C 0
s colAng1.NW_012115566v1     1756361 13 -   3067355 GG---------------------CTCTTGTTTTT
i colAng1.NW_012115566v1   I 5 C 0
s calJac3.chr4             171328894 13 - 171630274 GG---------------------CTCTTTTTCTT
i calJac3.chr4             I 5 I 6
s saiBol1.JH378348            157157 34 -    375362 GGtttgttttttcttttctttttttttttttttt
i saiBol1.JH378348         I 5 I 6
s cebCap1.NW_016108108v1      158387 31 -    373274 GG---Ctttttttttttttttttttttttttttt
i cebCap1.NW_016108108v1   I 5 I 6
s aotNan1.NW_018494050v1       95671 23 -    285216 GC-----------CTCtttttttttttttttttt
i aotNan1.NW_018494050v1   I 5 I 6
s otoGar3.GL873742           1482419 10 -   2232465 ------------------------TCTTTCAGTT
i otoGar3.GL873742         C 0 C 0
e cerAty1.NW_012001495v1     1766297  9 -   2157725 I

a score=2144723.000000
s hg38.chr6_GL000254v2_alt     56718 228 +   4827813 -----CTGTCTTGCTCTTCAACGATATGGCAAAAAGGAAC-AGAGGATTATTGGGCACGTTAATGTGGTGGCAGGTTTATAGCTTCTGACTAAGGAAATCCTGAGCGAGAAAATTCATTTTCGCTATTCCCTTCCTTTCACTCGTC-TTGTGCTGACACATCCACCTTGGGTGGTACAGAGACCCAGGGAGTGGAAATGGAAAGTATAATATGTTTATTTTAGTGTGACCACGCA
s panTro5.chr6              29027597 228 + 175400573 -----CTGTCTTGCTCTTCAACGATATGGCAAAAAGGAAC-AGAGGATTATTGGGCACGTTAATGTGGTGGCAGGTTTATAGCTTCTGACTAAAGAAATCCTGAGCGAGAAAATTCATTTTCGCTATTCCCTTCCTTTCACTCGTC-TTGTGCTGACACATCCACCTTGGGTGGTACAGAGACCCAGGGAGTGGAAATGGAAAGTATAATATGTTTATTTTAGTGTGACCACGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29271757 228 + 173848474 -----CTGTCTTGCTCTTCAACGATATGGCAAAAAGGAAC-AGAGGATTATTGGGCACGTTAATGTGGTGGCAGGTTTATAGCTTCTGACTAAAGAAATCCTGAGCGAGAAAATTCATTTTCGCTATTCCCTTCCTTTCACTCGTC-TTGTGCTGACACATCCACCTTGGGTGGTACAGAGACCCAGGGAGTGGAAATGGAAAGTATAATATGTTTATTTTAGTGTGACCACGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5070344 228 +   6154872 -----CTGTCTTGCTCTTCAACGATATGGCAAAAAGGAAC-AGAGGATTATTGGGCACGTTAATGTGGTGGCAGGTTTATAGCTTCTGACTAAAGAAATCCTGAGCGAGACGGTTCATTTTCGCTATTCCCTTCCTTTCACTCGTC-TTGTGCTGACACATCCACCTTGGGTGGTACAGAGACCCAGGGAGTGGAAATGGAAAGTATAATATGTTTATTTTAGTGTGACCACGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74092528 227 + 122973662 -----CTGTCTTGCTCTTCAACGATATGGCAAAAAGGAAC-AGAGGATTATTGGGCAAGTTAATGTGGTGGCGGGTTTATAGCTTCTGACTAAA-AAATCCTGAGCGAGACAATTCATTTTCGCTATTCCCTTCCTTTCACTGGTC-TCGTGCTGACACATCCACCTTGGGTGGTACAGAGACCCAGGGAGTGGAAATGGAAAGTATAATATGTTTATTTTAGTGTGACCACGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29212648 222 + 172585720 -----CTGTCTTACTCTTCAACGATATGGCAAAAAGGAAC-AAAAGATTATTGGGCATGTTAATGTGGT-GTGGGTTTATAGCTTCCGACTAAAGAAATCCAGAGCAAGACAATTCATTTTCGCTATTCCCTTCCTGTCACTCATC-TCGGACTGACACATCCACCTTAGGTGGTACAGAGACCCAGGGAGTGGAAATGGAAAG-----TATGTTTATTTTAGTGTGACCACGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28901148 222 - 170955103 -----CTGTCTTACTCTTCAACGATATGGCAAAAAGGAAC-AAAAGATTATTGGGCATGTTAATGTGGT-GTGGGTTTATAGCTTCCGACTAAAGAAATCCAGAGCAAGACAATTCATTTTCGCTATTCCCTTCCTGTCACTCATC-TCGGGCTGACACATCCACCTTAGGTGGTACAGAGACCCAGGGAGTGGAAATGGAAAG-----TATGTTTATTTTAGTGTGACCACGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1876463 222 -   2996164 -----CTGTCTTACTCTTCAACGATATGGCAAAAAGGAAC-AAAAGATTATTGGGTATGTTAATGTGGT-GTGGGTTTATAGCTTCCGACTAAAGAAATCCAGAGCAAGACAATTCATTTTCGCTATTCCCTTCCTGTCACTCATC-TCGGGCTGACACATCCACCTTAGGTGGTACAGAGACCCAGGGAGTGGAAATGGAAAG-----TATGTTTATTTTAGTGTGACCACGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1766306 216 -   2157725 -----CTGTCTTACTCTTCAACGATATGGCAAAAAGGAAC-AAAAGATTATTGGGCATGTTAATGT-------GGTTTATAGCTTCTGACTAAAGAAATCCTGAGCAAGACAATTCATTTTCGCTATTCCCTTCCTGTCACTCATC-TCGGGCTGACACATCCACCTTAGGTGGTACAGAGACCCAGGGAGTGGAAATGGAAAG-----TATGTTTATTTTAGTGTGACCATGCA
i cerAty1.NW_012001495v1   I 9 C 0
s chlSab2.chr17             28219783 216 -  71996105 -----CTGTCTTACTCTTCAACGATATGGCAAAAAGGAAC-AAAAGATTACTGGGCATGTTAATGT-------GGTTTATAGCTTCCGACTAAAGAAATCCTGAGCAAGACAATTCATTTTCGCTATTCCCTTCCTGTCACTCATC-TCGGGCTGACACATCCACCTTAGGTGGTACAGAGACCCATGGAGTGGAAATGGACAG-----TATGTTTATTTTAGTGTGACCACGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1882909 216 +   2316924 -----CTGTCTTACTCTTCAACGATATGGCAAAAAGGAAC-AAAAGATTATTGGGCATGTTAATGT-------GGTTTATAGCTTCTGACTAAAGAAATTCTGAGCAAGACAATTCATTTTTGCTATTCCCTTCCTGTCACTCATC-TCGGGCTGACACATCCACCTTAGGTGGTACAGAGACCCAGGGAGTGGAAATGGAAAG-----TATGTTTATTTTAGTGTGACCACGCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1756374 228 -   3067355 -----CTGTCTTACTCTTCAACCATATGGCAAAAAGGAAC-AAAGGATTATTGGGCATGTCAATGTGATGGTGGGTTTATAGCTTCTGACTAAAGAAATCCTGAGCAAGACAATTCATTTTCGCTATTCCCTTCCTGTAACTCATC-TCGGGCTGACACATCCACCTTAGGTGGTACTGAGACCCAGGGAGTGGAAATGGAAAGTATAATATGTTTATTTTAGTGTGACCACGCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328913 222 - 171630274 -----ATGTCTTGCTTTTCAACGACACAGCAGAAAGGAAC-AGAGGATTGCTGGTCACGGTAATTTGGTGGCGGGTTTATAGCTTCCGATTAAAGAAATCCTGAGTGAGACGATTCTTCTTCGCTGTTCCTTTC-----ACTCATC-TGGTGCTGACACATCCCCCTTGGCTGGTACAGAGACCCAGGGAGTGG-AATGGAGGCCGTAACATGTTTATTTTAGTGCGACCATGCA
i calJac3.chr4             I 6 C 0
s saiBol1.JH378348            157197 223 -    375362 -----CTGTCTTGCTGTTCGACAACACAGCAGAAAGGAAC-AGAGGATTACTGGGCACGGTAATGTGGTGGCGGGTTTATAGCTTCCGATTAAGGAAATCCTGAGTGAGACAATTCTTTTTGGCTATTCCTTTC-----ACTTGTC-TGGTGCTGACACATCCACCCTGGGTAGTACAGAGACCCAGGGAGTGGAAATGGAAGCTACAACATGTTTATTTTAGTGTGGAAATGGA
i saiBol1.JH378348         I 6 C 0
s cebCap1.NW_016108108v1      158424 223 -    373274 -----ttttcttGCTCTTCAACAACACAGCAGAAAGGAAC-AGAGGATTACTGGGCACGGTAATGCGGTGGCGGGTTTACAGCTTCCGATTAAAGAAATCCTGAGTGAGACAATTCTTTTTCGCTATGCTTTTC-----ACTCGTC-TGGTGCTGACGCATCCACCTTGGGTGGTACAGAGACCCAGGGAGTGGAAATGGAAGCTATAACGTGTTTATTTTAGTGTGACTATGGA
i cebCap1.NW_016108108v1   I 6 C 0
s aotNan1.NW_018494050v1       95700 220 -    285216 -----CTGTCTTGCTCTTCAACGACACAGCAGAAGGGAAC-AGAGGATTAC-GGGCACGGTAATGCGGTGGCGGCTTTATAGCTTCCGAATAAAGAAATCCTGAGTGAGACCATTCTTTTTCGCTATTCCTTTC-----ACTCGTC-TGGTGCTGACACATCCACCTTGGATGGTACAGAGACCCAGGGAGTGGAAATGGAGGCTATAA--TGTTTATTTTAGTGTGACCATGCA
i aotNan1.NW_018494050v1   I 6 C 0
s otoGar3.GL873742           1482429 227 -   2232465 CTGCTTTAACTTTCTCGTCAATAACAGAGCAAACAGGAACTAGAGGATTATTGGTCACTTGCGAGTGACGGCGGGCTTCTGTCTTCGGCATAAAGAAATCCTGAGCAAGCCAGTT-ATGTTCGCCATTCCCATTCTTTTACTTGTCTTTGTCCTGATACGTTCACATTGGGTGATGCGGTGACTCAGAGAGTGGAAATGGGAAG-------TATCAATTTTAGTGTGATCATTTA
i otoGar3.GL873742         C 0 I 115

a score=675080.000000
s hg38.chr6_GL000254v2_alt     56946 70 +   4827813 --------------------------AGGCATGTTTTTAAAAGGAGAAAAGTACAGAG-TGGCGAGAATTGTGAAAAACAGATGAACATGTATGCTT
s panTro5.chr6              29027825 70 + 175400573 --------------------------AGGCATGTTTTTAAAAGGAGAAAAGTACAGAG-TGGCGAGAATTGTGAAAAACAGATGAACATGTATGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29271985 70 + 173848474 --------------------------AGGCATGTTTTTAAAAGGAGAAAAGTACAGAG-TGGCGAGAATTGTGAAAAACAGATGAACATGTATGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5070572 70 +   6154872 --------------------------AGGCGTGTTTTTAAAAGGAGAAAAGTACAGAG-TGGCGAGAATTGTGAAAAACAGATGAACATGTATGCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74092755 70 + 122973662 --------------------------AGACATGTTTTTAAAAGGAGAAAAGTACAGAG-TGGCGAGAATTGTGAAAAACAGATGAACGCGTATGCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29212870 70 + 172585720 --------------------------AAACGTGTTTTTAAAAGGAGAAAAGTACAGAA-TGGCAAGAATTGTGAAAAACAGATGAACGTGTGTGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28901370 70 - 170955103 --------------------------AAACGTGTTTTTAAAAGGAGAAAAGTACAGAA-TGGCAAGAATTGTGAAAAACAGATGAACGTGTGTGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1876685 70 -   2996164 --------------------------AAACGTGTTTTTAAAAGGAGAAAAGTACAGAA-TGGCAAGAATTGTGAAAAACAGATGAACGTGTGTGCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1766522 70 -   2157725 --------------------------AAACGTGTTTTTAAAAGGAGAAAAGTACAGAA-TGGCAAGAATTGTGAAAAACAGATGAACGTGTGTGCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28219999 70 -  71996105 --------------------------AAACGTGTTTTTAAAAGGAGAAAAGTATAGAA-TGGCAAGAATTGTGAAAAACAGATGAACGTGTGTGCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1883125 70 +   2316924 --------------------------AAACGTGTTTTTAAAAGGAGAAAAGTACAGAA-TGGCAAGAATTGTGAAAAACAGATGAACGTGTGTGCTT
i manLeu1.NW_012104165v1   C 0 I 3451
s colAng1.NW_012115566v1     1756602 70 -   3067355 --------------------------AAACATGTTTTTAAAAGGAGAAAAGTACAGAA-TGGCGAGAATTGTGAAAAACAGATGAACGTGTATGCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171329135 70 - 171630274 --------------------------AAATTCATTTTTAAGAGGAGAAAAGCACAGGA-TGGTGAGAATTGTGAAGAACCGACAAACGTTTATGGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            157420 70 -    375362 --------------------------AAATTCATTTTTAAAAGGAGAAAAGCACAGGA-TGGTGAGAACTGTGAAGAACAGACAAACGTTTATGGTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      158647 70 -    373274 --------------------------AAATTCATTTTTAAAAGGAGAAAAGCACAGGA-TGGCGAGAATTGTGAAGAACAGATAAACGTTTATGGTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       95920 66 -    285216 --------------------------AAATTCATTTTTAAAAGGAGAAAAGCACAGCA-TGGTGAGAATTGTGAAGAAC----AAACGTTTATGGTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482771 97 -   2232465 aggcgtgctccaccgcatccagcCAAAACGGTGTTTTTAAAAGGTGAAAAGTAAAGGATTGTTGAAGATTGTGAAAAGTAGATGAAGGTGTATGATT
i otoGar3.GL873742         I 115 C 0

a score=3529248.000000
s hg38.chr6_GL000254v2_alt     57016 404 +   4827813 TTGAA--CTCTGTGCAAGGCAAGGACACACTACCACTGAGCCACACCTCTCTCGCTACAGAAACATCGTGAAGATCTTTTTTGACGCATTAGTCATATTTCTGAGAGGTCTTC-AAAAATATGGTAAGTTGGCCGGATAGAAAATCCACTGTCTCATATCTCACTATTTCTTA--CCTCTAAACTATATCCCCT-GAAGCTGCTAGGAGAAATGTAAGAGAATCACAGACCAGAACACA--GTT-----TCTGCTTTTGGAACATTTCATCCCATCAGTTTATTCTGAGGTT-TCCTCTCC-AGCAAACTGCCTGGGGGCATTTTCTCCCACAGCCAACAGGTAAGATGTCCAGATGGAACTTCCTCTGGGGTCTTCAACCTGTCTG----TCTCCATTTCTTCTCTTTCATCTGCTTACAAA
s panTro5.chr6              29027895 402 + 175400573 TTGAA--CTCTGTGCAAGGCAAGGACACACTACCACTGAGCCACACCTCTCTCGCTACAGAAACATCGTGAAGATCTTTTTTGACGCATTAGTCATATTTCTGAGAGGTCTTC-AAAAATATGGTAAGTTGGCCGGATAGAAAATCCACTGTCTCATATCTCACTATTTCTTA--CCTCTAAACTATATCCCCT-GAAGCTGCTAGGAGACATGTAAGAGAATCACAGACCAGAGCA----GTT-----TCTGCTTTTGGAACATTTCATCCCATCAGTTTATTCTGAGGTT-TCCTCTCC-AGCAAACTGCCTGGGGGCATTTTCTCCCACAGCCAACAGGTAAGATGTCCAGATGGAACTTCCTCTGGGGTCTTCAACCTGTCTG----TCTCCATTTCTTCTCTTTCATCTGCTTACAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29272055 404 + 173848474 TTGAA--CTCTGTGCAAGGCAAGGACACACTACCACTGAGCCACACCTCTCTCGCTACAGAAACATCGTGAAGATCTTTTTTGACGCATTAGTCATATTTCTGAGAGGTCTTC-AAAAATATGGTAAGTTGGCCGGATAGAAAATCCACTGTCTCATATCTCACTATTTCTTA--CCTCTAAACTATATCCCCT-GAAGCTGCTAGGAGAAATGTAAGAGAATCACAGACCAGAGCACA--GTT-----TCTGCTTTTGGAACATTTCATCCCATCAGTTTATTCTGAGGTT-TCCTCTCC-AGCAAACTGCCTGGGGGCATTTTCTCCCACAGCCAACAGGTAAGATGTCCAGATGGAACTTCCTCTGGGGTCTTCAACCTGTCTG----TCTCCATTTCTTCTCTTTCATCTGCTTACAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5070642 405 +   6154872 TTGAA--CTCTGTGCAAGGCAAGGACACACTACCACTGAGCCTCACCTCTCTCGCTACAGAAACATCGTGAAGATCTTTTTTGACGCGTTAGTCATATTTCTGAGAGGTCTTCAAAAAATATGGTAAGTTGACCGGATAGAAAATCCACtatctcatatctcactatttctta--cctctaaactatatcCCCT-GAAGCTGCTAGGAGAAATGTAAGAGAATCACAGACCAGAACACA--GTT-----TCTGCTTTTGGAACATTTCATCCCATCAGTTTATTCTGAGGTT-TCCTCTCC-AGCAAACTGCCTGGGGTAATTTTCTCCCACAGCCAACAGGTAAGATATCCAGATGGAACTTCCTCTGGGGTCTTCAACCTGTCTG----TCTCCATTTCTTCTCTTTCATCTCCTTACAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74092825 406 + 122973662 TTGAA--CCCTGTGCAAGGCAAGGACACACTACCACTGAGCCACACCTCTCTCACTACAGAAACATCGTGAAGATCTTTTTTGAGGCATTAGTCGTATTTCTGAGAGGTCTTC-AAAAATATGATAAGTTGGCTGGATAGAAAATCCACTGTCTCATATCTCACTATTTCTTA--GGTCTAAACTATATCCCCT-GAAGCTGCCAGGAGAAATGTAAGCGAATCACAGACCAAATCACACTGTT-----TCTGCTTCTGGAACATTTCACCCCATCAGTTTATTCTGAGGTT-TCCTCTCC-AGCAAACTGCCTGGGGGCATTTTCTCCCACAGCCAACAGGTAAGATGTCCAGATGGAACTTACTCTGGGGTCTTCAACCTGTCTG----TCTCCATTTCTTCTCTTTCATCTGCTTACAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29212940 407 + 172585720 TTGAA--CCCTGTGCAAGGCAAGGACACACTACCACTGAGCCACACCTCTCTCACTA-AGAAACATCGTGAAGATCTTTTTTGATGCTTTAGCCATATTTCTGAGAGGTCTTC-AAAAATATGATAAGTTGGCCAGATAGAAAATCCACTGCCTCATATCTCAGTATTTCTTA--CCTCTAAACTATATCCCCTAAAAGCTTCTAGGAGAAAAGTAAGAGAATCACAGACCAAATCACACTGTT-----TCTGCTTCTAGAACATTTCAGCCCATCAGTTTATTCTGAGGTTTTTCTCTCC-AGCCAACTGCCTGAGGGCATTTTCTCCCACAGCCAAGAGGTAAGATGTCCAGATGGAACTCTCTCTGGGGTCTTCAACTTGTCTG----TGTCCTTTTCTTCTCTTTCATCTGCTTACGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28901440 407 - 170955103 TTGAA--CCCTGTGCAAGGCAAGGACACACTACCACTGAGCCACACTTCTCTCACTA-AGAAACATCATGAAGATCTTTTTTGATGCTTTAGCCATATTTCTGAGAGGTCTTC-AAAAATATGATAAGTTGGCCAGATAGAAAATCCACTGCCTTATATCTCAGTATTTCTTA--CCTCTAAACTATATCCCCTAAAAGCTTCTAAGAGAAAAGTAAGAGAATCACAGACCAAATCACACTGTT-----TCTGCTTCTAGAACATTTCAGCCCATCAGTTTATTCTGAGGTTTTTCTCTCC-AGCCAACTGCCTGAGGGCATTTTCTCCCACAGCCAAGAGGTAAGATGTCCAGATGGAACTCTCTCTGGGGTCTTCAACTTGTCTG----TGTCCATTTCTTCTCTTTCATCTGCTTACGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1876755 407 -   2996164 TTGAA--CCCTGTGCAAGGCAAGGACACACTACCACTGAGCCACACTTCTCTCACTA-AGAAACATCGTGAAGATCTTTTTTGATGCTTTAGCCATATTTCTGAGAGGTCTTC-AAAAATATGATAAGTTGGCCAGATAGAAAATCCACTGCCTCATATCTCAGTATTTCTTA--CCTCTAAACTATATCCCCTAAAAGCTTCTAGGAGAAAAGTAAGAGAATCACAGACCAAATCGCACTGTT-----TCTGCTTCTAGAACATTTCAGCCCATCAGTTTATTCTGAGGTTTTTCTCTCC-AGCCAACTGCCTGAGGGCATTTTCTCCCACAGCCAAGAGGTAAGATGTCCAGATGGAACTCTCTCTGGGGTCTTCAACTTGTCTG----TGTCCATTTCTTCTCTTTCATCTGCTTACGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1766592 407 -   2157725 TTGAA--CCCTGTGCAAGGCAAGGACACACTACCACTGAGCCACACCTCTCTCACTA-AGAAACATCGTGAAGATCTTTTTTGATGCTTTAGCCATATTTCTGAGAGGTCTTC-AAAAATATGATAAGTTGGCCAGATAGAAAATCCACTGCCTCATATCTCAGTATTTCTTA--CCTCTAAACTATATCCTCTAAAAGCTGCTAGGAGAAAAGTAAGAGAATCACAGACCAAATCACACTGTT-----TCTGCTTCTAGAACATTTCAGCCCATCAGTTTATTCTGAGGTTCTTCTCTCC-AGCCAACTGCCTGAGGGCATTTTCTCCCACAGCCAAGAGGTAAGATGTCCAGATGGAACGTTCTCTGGGGTCTTCAACTTGTCTG----TGTCCATTTCTTCTCTTTCATCTGCTTACAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28220069 407 -  71996105 TTGAA--CCCTGTGCAAGGCAAGGACACAATACCACTGAGCCACACCTCTCTCACTA-AGAAACATCATGAAGATCTTTTTTGATGCTTTAGCCACATTTCTGAGAGGTCTTC-AAAAATGTGATAAGTTGGCCAGATAGAAAATCCACTGCCTCATATCTCAGTATTTCTTA--CCTCTAAACTATATCCCCTAAAAGCTGCTAGGAGAAAAGTAAGAGAATCACAGACCAAATCACACTGTT-----TCTGCTTCTAGAACATTTCAGCCCATCAGTTTATTCTGAGGTTTTTCTCTCC-AGCCAACTGCCTGAGGGCATTTTCTCCCACAGCCAAGAGGTAAGATGTCCAGATGGAACTTTCTCTGGGGTCTTCAACTTGTCTG----TGTCCATTTCTTCTCTTTCATCTGCTTACAAA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1756672 407 -   3067355 TTGAA--CCCTGTGCAAGGCAAGGACACACTACCACTAAGCTACACCTCTCTCACTACAGAAACATCGTGAAGATCTTTTTTGATGCTTTAGCCATATTTCTGAGAGGTCTTC-AAAAATATGGTAAGTTGGCCAGATAGAAAATCCACTGTCTCATATCTCAGTATTTCTTA--CCCCTAAACTATATCCCCT-AAAGCTGCTAGGAGAAATGTAAGAGAATCACAGACTAAATCACACTGTT-----TCTGCTTCTAGAACATTTCATCCCATCAGTTTATTCTGAGGTTTTTCTCTCC-AGCACACTGCCTGGGGGCATTTTCTCCCACAGCCAACAGGTAAGATGTCCAGATGGAACTTTCTCTGGGGTCTTCAACCTGTCTG----TGTCCATTTCTTCTCTTTCATCTGCTTACAAA
i colAng1.NW_012115566v1   C 0 I 7421
s calJac3.chr4             171329205 405 - 171630274 TTGAA--CGCTATGTGAGGCAAGGACACGCTGCCACGGACCCACACCCATCTCACTACAGACATAGTGTGAAGATCCTCCTTGAAACACTGGTCATATTTCTGAGGGGTCTTC-AAAGGCATAATAAGTTGGCCAGATAGAAAATCCACTGTCTCATATCTCACTGTTTCTTA---CTCTAAACTATATCCTCT-GAAGCTACCAGGAGAAATGTGAGAGAATCATAGACCAAATCACACTGTT-----TCTGCTTCTAGAACATTTCATCCCATCGGTTTATTCTGAGGTT-TCCTCTCC-AGCGAACTGCCTGGGGGCACTTTCTCCCACTGCCAACAGGTAAGATGTCCAGATGAAACTTTCCCTGGGGTCTTCAACCTGTTTT----TCTGCATTTCTTCCCTTTCACCTGCTTACAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            157490 404 -    375362 TTGAA--CGCTATGTGAGGCAAGGACACGCTGCCACGGAGCCACATCTGTCTCACTACAGACATATCGTGAAGATCTTCCTTGAAGCATTAGTCATATTTCTGAGGGGTCTTC-AAAGGTGTAATAAGTTGGCCAGATAGAAAATCCACTGTCTCATATCTCACTATTTCTTA---CTCTAAACTATATCCTCT-GAAGCTACTAGGAGACATGTAAGAGAATCATAGACCAAATCACACTGTT-----TCTGCTTCTAGAACATTTCATCCCATCCGTTTATTCTGAGGTT-TCCTCTCC-AGCAAACTGCCTGGGGGCATTTTCTCCCATTGCCAACAGGTAAGACATCCAGATGAAAC-TTCTCTGGCGTCTTCAACCTGTTTT----TCTGCATTTCTTCCCTTTCATCTGCTTACAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      158717 377 -    373274 TTGAA--CGCTATGTGAGGCAAGGACTCGCTGCCACGGAGCCACACCTGTCTCACTACAGACATATTGTGAAGATCTTCCTTGAAGCATTAGTCATATTTCTGAGGGGTCTTC-AAAGGTGTAATACGTTAGCCAGATGGAAAATCCACTGTCTCATATCTCACTATTTCTTA---CTCTAAACTACATCCACT-GAAGCTACTAGGAGAAATGTAAGAGAATCATAAACCAAATCACACTGTT-----TCTGCTTCTAGAACATTTCATCCCATCCGTTTATTCTGAGGTT-TCCTCTCC-AGCAAACTGCCTGGGGGCACTTTCTCCCACTGCCAACA----------------------------GGGGTCTTCAACCTGCTTT----TCTGCATTTCTTCCCTTTCATCTGCTTACAAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       95986 405 -    285216 TCGAA--CACTATGTGAGGCAAGGACACGCTGCCACGGAGCCACACCTGTCTCACTACAGACATAGTGTGAAGATCTTCCTTGAAGCATGAGTCATATTTCTGAGGGGTCTTC-AAAGGTATAATAAGTTGGCCAGATAGAAAATCCACTATCTCATATCTCACTATTTCTTA---CTCTAAACGATATCCTCT-GAAGCTACCAGGAGAAATGTAAGAGAATCATAGACCAAATCACACTGTT-----TCTGCTTCTAGAACATTTCATCCCATCCGTTTATTCTGAGGTT-TCCTCTCC-AGCAAACTGCCTGGGGGCACTTTCTCCCACTGCTAACAGGTAAGATGTCCAGATGAAACTTTCTCTGGGGTCTTCAACCTGTTTT----TCTGCATTTCTTCCCTTTCATCTGCTTACAAA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482868 403 -   2232465 -TGGAGCCTTTTTACAAGAAAAAGACACACTACCACTAAGCTACATCCCTATCAAGACAGAAACATCATAAAGATCCTCTTTAAATTGTTAGTCATATTTCTGGGGTCTCTTC-AAAGATATGATA-GTTGGCCAGATAGAAAATCCACC-TCTCAAATCCCACTAGTTTTTAAACCTCT-AACTATATCCTCT-TAATCTGCTAGGGAACATGTACGAGAATCACAGACCAAACAACACTGTTTCTGCTCTGCTCCTAGGACGTTTTACCCTTTTACTTCA--CTAA-----TCCATTCCAAACAAACTGCCTGAGGGCATTAT-TCCCACAGCCACCCGGAAAGATCTCTAGATCTAACGTTCTAC-GTATCTTTGACATTTTTTTTCCTCTCCATATTTGCACTTTC-TTTGCTAA----
i otoGar3.GL873742         C 0 C 0
e manLeu1.NW_012104165v1     1883195 3451 +   2316924 I

a score=253162.000000
s hg38.chr6_GL000254v2_alt     57420 32 +   4827813 GTTTTTCAAGCCCCATCCTCCttaagaaaaga
s panTro5.chr6              29028297 32 + 175400573 GTTTTTCAAGCCCCATCCTCCttaagaaaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29272459 32 + 173848474 GTTTTTCAAGCCCCATCCTCCttaagaaaaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5071047 32 +   6154872 GTTTTTCAAGCCCCGTCCTCCttaagaaaaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74093231 32 + 122973662 GTTTTTCAAGCCCCATCCTCCttaagaaaaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29213347 32 + 172585720 GTTTTTCAAGCCCCATCCTACTTAAGAAAAGA
i rheMac8.chr4             C 0 I 2656
s macFas5.chr4              28901847 32 - 170955103 GTTTTTCAAGCCCCATCCTACTTAAGAAAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1877162 32 -   2996164 GTTTTTCAAGCCCCATCCTACTTAAGAAAAGA
i macNem1.NW_012011356v1   C 0 I 2657
s cerAty1.NW_012001495v1     1766999 32 -   2157725 GTTTTTCAAGCCCCATCCTACTTAAGAAAAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28220476 32 -  71996105 GTTTTTCAAGCCCCATCCTACTTAAGAAAAGA
i chlSab2.chr17            C 0 I 1556
s calJac3.chr4             171329610 32 - 171630274 ATTTTTCAAGCTCCCTCCTCTttaagaagaga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            157894 32 -    375362 GTTTTTCAAGCTCCCTCCTCTttaagaagaga
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      159094 32 -    373274 GTTTTTGAAGCTCCCTCCTCTTTAAGaagaga
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       96391 32 -    285216 GTTTTTCAAGTTCCCTCCGCTttaagaagaga
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1483271 32 -   2232465 ATTTTCCAAGCTCCTTTCATCTTAAAAAGAGA
i otoGar3.GL873742         C 0 C 0
e colAng1.NW_012115566v1     1757079 7421 -   3067355 I
e manLeu1.NW_012104165v1     1883195 3451 +   2316924 I

a score=15047.000000
s hg38.chr6_GL000254v2_alt     57452 3 +   4827813 tga
s panTro5.chr6              29028329 3 + 175400573 tga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29272491 3 + 173848474 tga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5071079 3 +   6154872 tga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74093263 3 + 122973662 tga
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28901879 3 - 170955103 CGA
i macFas5.chr4             C 0 I 2652
s cerAty1.NW_012001495v1     1767031 3 -   2157725 TGA
i cerAty1.NW_012001495v1   C 0 I 2681
s calJac3.chr4             171329642 3 - 171630274 tga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            157926 3 -    375362 tga
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      159126 3 -    373274 tga
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       96423 3 -    285216 tga
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1483303 3 -   2232465 AGA
i otoGar3.GL873742         C 0 C 0
e colAng1.NW_012115566v1     1757079 7421 -   3067355 I
e manLeu1.NW_012104165v1     1883195 3451 +   2316924 I
e chlSab2.chr17             28220508 1556 -  71996105 I
e macNem1.NW_012011356v1     1877194 2657 -   2996164 I
e rheMac8.chr4              29213379 2656 + 172585720 I

a score=1007927.000000
s hg38.chr6_GL000254v2_alt     57455 347 +   4827813 tgagccacagtctaggagaagatattccaatac-ttatattttactaaggatctttatctggaatatgttaagaacttctacaaagcacta-agaaaaagactaaaacttcaataagaaagagcaaattaatatgaacttcacaaaaaatcgctattgagtaaaataaaatatgctcgacatcttttgctataaaggaaatgcaaattaaaaacacaacaatgctggacacagtggctcacgcctatactcccagcagtttgggaggtcgaggcgggtggatcacttgaggttaggagttcaagaccag-ctggccaacatggcgaaacccggtctctactacaaataca
s panTro5.chr6              29028332 347 + 175400573 tgagccacagtctaggagaagatattccaatac-ttatattttactaaggatctttatctggaatgtattaagaacttctacaaagcacta-agaaaaagactaaaacttcaataagaaagagcaaattaatatgcacttcacaaaaaatcgctattgagtaaaataaaatatgctcgacatcttttgctataaaggaaatgcaaattaaaaacacaacaatgctggacacagtggctcacgcctatactcccagcagtttggaaggtcgaggtgggtggatcacttgagattaggagttcaagaccag-ctggccaacacggcgaaacccggtctctactacaaataca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29272494 347 + 173848474 tgagccacagtctaggagaagatattccaatac-ttatattttactaaggatctttatctggaatgtattaagaacttctacaaagcacta-agaaaaagactaaaacttcaataagaaagagcaaattaatatgcacttcacaaaaaatcgctattgagtaaaataaaatatgctcgacatcttttgctataaaggaaatgcaaattaaaaacacaacaatgctggacacagtggctcacgcctatactcccagcagtttggaaggtcgaggcgggtggatcacttgagattaggagttcaagaccag-ctggccaacacggcgaaacccggtctctactacaaataca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5071082 348 +   6154872 tgagccacagtctaggagaagatattccaatgctttatattttactaaggatctttatctggaatatgttaagaacttctacaaagcacta-agaaaaagactaaaacttcaataagaaagagcaaattaatatgcacttcacaaaaaatcgctattgagtaaaataaaatatgctcgacatcttttgctataaaggaaatgcaaattaaaaacacaacaatgctggacacagtggctcacgcctatactcccagcagtttgggaggtcgaggcgggtggatcacctgaggttaggagttcaagaccag-ctggccaacatggcgaaacccggtctctactacaaataca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74093266 348 + 122973662 tgagccacagtctaggagaagatatttcaatac-ttatattttactaaggatctttacctggaatatgttaagaacttctacaaagcacta-agaaaaagactaaaacttcaataagaaagagcaaattaatatgcacttcacaaaaaatcgctattgagtaaaataaaatatgctcgacatcttttgctataaaggaaatgcaaattaaaaacataacaaggctgggcacagtggctcacgcctatactcccagcactttgggaggtcgaggcaggtggatcacccgaggttaggagttcaagaccagcctggccaacatggcaaaacccggtctctactacaaatata
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171329645 328 - 171630274 tgagccacagtctacgagaagatatttcaatac-ttatattttactaaggatccgtatcaggaatatgttaagaacttctacaaagcacta-ataaaaagactaaaacttcaataagaaagagcaaattaacaagtacttaacaagaaatggctac----taatataaaatatgcttgacatcatttgctacataggaaatgcaaattaaaaacacaacaaGGCTGGGcacg------------tatactcccagcaccttgggaggctga----ggtggatcacctgaggtcagaagttcaagaccagcccggccaacatggcgaaaccctatctctgctaaaaataca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            157929 336 -    375362 tgagccacaatctacgagaagctatatcaatac-ttatattttactaaggatccttatcaggaatatggtaagaacttctacaaagcacta-ataaaaagacggaaacttcaataagaaagagccaattaacatgtacttaacaaaaaatggctattgagtaatataaaatatgcttgacatcatttgctataaaggaaatgcaaattaaaaacacaacaagGCTGGGTATG------------tatactcccagcaccttgggaggctgaggtgggtggatcacctgaggtcaaaagttcaagaccagcctggccaacatggcgaaatcctgtctctactaaaaataca
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      159129 336 -    373274 agagccacagtctacgagaagatatttcaatac-ttatattttactaaggatccttatcaggaatatgttaagaacttctacaaagcagta-ataaaaagactaaaacttcaataagaaagagcaaattaacatgtacttaacatgaaatggctatcgagtaatataaaatatgcttgacatcatttgctataaaggaaatgcaaattaaaaacacaacaaggctgggtgca------------tatactcccagcaccttgggaggctgaggcgggtggatcgcctgaggtcaaaagttcaagaccagcctggccaacatggcgaaaccctgtctctactaaaagtaca
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       96426 336 -    285216 tgagccacagtctatgagaagatatttcaatac-ttgtattttactaaggatccttatcaggaatatgttaagaacacctacaaagcacta-ataaaaagactaaaacttcagtaagaaagagcaaattagcatgtacttaacaagaaatggctattgagtaatataaaatatgcttgacatcatttgctataaaggaaatgcaaattaaaaacacaacaaggctgggtgcg------------tatactcccagcaccttgggaggctgaggcgggtggatcacctgaggtcagaagttcaagaccagcctggccaacatggcgaaaccctgtctctactaaaaataca
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1483306 205 -   2232465 TGAACCTCAATCGgggagaaaatattttaatac-ttacattttact---------tatccagaatatgttaagaactcctacaaaacactagaaaaaaagactaaaaactcatt---aaaaagcaaattaacatgcacttcat-taaaatggctatttagctatataaaa-atgctcaaca---gttgct-------gaatgcaagttacaaacacatcaaaacaataca------------------------------------------------------------------------------------------------------------------------
i otoGar3.GL873742         C 0 C 0
e colAng1.NW_012115566v1     1757079 7421 -   3067355 I
e manLeu1.NW_012104165v1     1883195 3451 +   2316924 I
e chlSab2.chr17             28220508 1556 -  71996105 I
e cerAty1.NW_012001495v1     1767034 2681 -   2157725 I
e macNem1.NW_012011356v1     1877194 2657 -   2996164 I
e macFas5.chr4              28901882 2652 - 170955103 I
e rheMac8.chr4              29213379 2656 + 172585720 I

a score=440983.000000
s hg38.chr6_GL000254v2_alt     57802 172 +   4827813 aaaatttagacggccacatgcccctgtagtcccaactactcaggaggctgaggcatgagaatctcttgatcctgggaggcaaaggctacagtgagccaagattgtgccgctgcactccagcctgggcagcacagcaagacactgtcgaaaaa-aa----aaa-------------------------------cacaaaataatattg
s panTro5.chr6              29028679 179 + 175400573 aaaatttagacggccacatgcccctgtagtcccaactactcaggaggctttggcatgagaatctcttgatcctgggaggcaaaggctacagtgagccaagattgtgccgctgcactccagcctgggcagcacagcaagacactgtcaaaaaa-aa----aaa--------------------aaaaaac----cacaaaataatattg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29272841 174 + 173848474 aaaatttagacggccacatgcccctgtagtcccaactactcaggaggctttggcatgagaatctcttgatcctgggaggcaaaggctacagtgagccaagattgtgccgctgcactccagcctgggcagcacagcaagacactgtcaaaaaa-aa----aaa-------------------------ac----cacaaaataatattg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5071430 184 +   6154872 aaaatttagacggccacatgcccctgtagtcccaactactcaggaggctgaggcatgagaatctcttgatcctgggaggcaaaggctacagtgagccaagattgtgccgctgcactccagcctgggcagcacagcaagacactgtcaaaaaa-aa----aaac-------------------aaaaaaccacacacaaaataatattg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74093614 172 + 122973662 aaaatttagacggccacatgcccctgtagtcccagctactcaggaggctgaggcatgagaatctcttgatcctgggaggcaaaggctacagtgagccaagatcgtgccgctgcactccagcctgggcagcacagcaagacactgtcaaaaaa-aa----aag-------------------------------ctcaaaataatattg
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171329973 202 - 171630274 aaaatgtagatggtcatgtacccctctagtcccaactactcaggaggctgaggcacgagaatcttttgaaattgagaggcagaggctacagtgagccaagattgtaccccggcactctagcctgggcagcagattaagccaccatctaagaa-ta-aataaataaacaaataaaatgaaataaaaaccc----cacaaaatactacta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            158265 203 -    375362 aaaatgtagatggtcatgtacccctttagtcccaaccactcaggaggccgaggcacgagaatctcttgaaattgagaggcagaggctacagtgagccgagactgtacccctacactctagcctgggcagcagattaagccaccatctaaaaatta-aataaataaataaaTTaaatgaaataaaaaccc----cacaaaataatacta
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      159465 197 -    373274 aaactgtagatggtcatgtacccctctagtcccaactactcaggaggctgaggcacgagaatctcttgaaatcgagaggcagaggctacagtga-ccaagactgta-ccctgcactctagcctgggcagcagattaagccaccatctaaaaa-ta----aaataaataaataaaatgaaataaaaaccc----cacaaaataatacta
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       96762 203 -    285216 aaaatgtagacggttatgtacccctctagtcccagctactcaggaggctgaggcacgagaatctcttgaaatcgagaggcagaggctacagtgagccgagattgtacccctgcactctagcctgggcagcagattaagccaccatctaaaaa-taaaataaatcaataaataaaataaaataaaaaccc----cacaaaataatacta
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1483511   0 -   2232465 C
e colAng1.NW_012115566v1     1757079 7421 -   3067355 I
e manLeu1.NW_012104165v1     1883195 3451 +   2316924 I
e chlSab2.chr17             28220508 1556 -  71996105 I
e cerAty1.NW_012001495v1     1767034 2681 -   2157725 I
e macNem1.NW_012011356v1     1877194 2657 -   2996164 I
e macFas5.chr4              28901882 2652 - 170955103 I
e rheMac8.chr4              29213379 2656 + 172585720 I

a score=301921.000000
s hg38.chr6_GL000254v2_alt     57974 85 +   4827813 ctcttcattggaatcatttaaccca--aaaagtggataatatcaagtgttgctgagtatgtgaagcaattggaacgtgcatacatgg
s panTro5.chr6              29028858 85 + 175400573 ctcttcatcggaatcatttaaccca--aaaagtggataatatcaagtgttgctgagtatgtgaagcaattggaacgtgcatacatgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29273015 85 + 173848474 ctcttcatcggaatcatttaaccca--aaaagtggataatatcaagtgttgctgagtatgtgaagcaattggaacgtgcatacatgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5071614 85 +   6154872 ctcttcatcggaatcatttaaccta--aaaagtggataatatcaagtgttgctgagtatgtgaagcaattggaacgtgcatacatgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74093786 85 + 122973662 ctcttcatcagaatcatttaaccta--aaaagtggataatatcaagtgttgctgagtatgtgaagcaattggaatgtgcatacatgg
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171330175 85 - 171630274 ctcttcatcggaaccacttaaccta--aaaagtggataatatcaagtgttgctgagtacgtgaagcaactggagcactcatacatgg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            158468 85 -    375362 ctcttcatctgaaccacttaaccta--aaaagtggataatatcaagtgttgctgagtatgtgaagcaattggaacactgatacatGG
i saiBol1.JH378348         C 0 I 3955
s cebCap1.NW_016108108v1      159662 85 -    373274 ctcttcatcagaaccacttaaccta--aaaagtggataatatcaagtgttgctgagtatgtgaagcaattggaacactcatacatgg
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1       96965 85 -    285216 ctcttcatcggaaccactcaaccta--aaaagtggataatatcaagtgttgctgagtatgtgaagcaattggaacactcatacatgg
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1483511 86 -   2232465 ctcttcaccagggtcacttaacctatcagaaat-gacaatatcaaatgttgctgagtatgtagagcaactggaacacttagacatta
i otoGar3.GL873742         C 0 C 0
e colAng1.NW_012115566v1     1757079 7421 -   3067355 I
e manLeu1.NW_012104165v1     1883195 3451 +   2316924 I
e chlSab2.chr17             28220508 1556 -  71996105 I
e cerAty1.NW_012001495v1     1767034 2681 -   2157725 I
e macNem1.NW_012011356v1     1877194 2657 -   2996164 I
e macFas5.chr4              28901882 2652 - 170955103 I
e rheMac8.chr4              29213379 2656 + 172585720 I

a score=764808.000000
s hg38.chr6_GL000254v2_alt     58059 343 +   4827813 ctgatgagactgtaaactgcta-tatctacactgggaaactatctgaaaatatcaactaaatatatatatatat-------atatatatatatat---------atatatata-tatatatat--atgctatgaccccaaaactagacggttacatttatacccaagagaagtgcatgagcatctcccttgaaggacatgtatcagaatgtttacagcagcattagacatttcaaccaaaaacgaggggtgctgcaaatgtacttggacagtaaaatgaattaataaatcatgatgtacagta-ttcagacaatagaatactcgagagcaacagaaaataactactgttactagcaacaatata
s panTro5.chr6              29028943 306 + 175400573 ctgatgagactgtaaactgcca-tatctacactgggaaactatctgaaaatattaactaaatatatatatatat-----------------------------------------------------gctatgaccccaaaactagacagttacatttatacccaagagaagtgcatgagcatctcccttgaaggacatgtatcagaatgtttacagcagcattagacatttcaacaaaaaacg---ggtgctgcaaatgtacttggacagtaaaatgaattaataaatcatgatgtacagta-ttcagacaatagaatactcgagagcaacagaaaataactactgttactagcaacaatatA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29273100 306 + 173848474 ctgatgagactgtaaactgcca-tatctacactgggaaactatctgaaaatattaactaaatatatatatatat-----------------------------------------------------gctatgaccccaaaactagacagttacatttatacccaagagaagtgcatgagcatctcccttgaaggacatgtatcagaatgtttacagcagcattagacatttcaacaaaaaacg---ggtgctgcaaatgtacttggacagtaaaatgaattaataaatcatgatgtacagta-ttcagacaatagaatactcgagagcaacagaaaataactactgttactagcaacaatata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5071699 344 +   6154872 ctgatgagactgtaaactgcta-tatctacactgggaaactatctgaaaatatcaactaaatatatatatatat---------atatatatatat--------aatatatatattatatatat--atgctgtgaccccaaaactagacggttacatttatacccaagagaagtgcatgaacatttcccttgaaggacatgtatcagaacgtttacagcagcattagacatttcaaccaaaaacgaggggtgctgcaaatgtacttggacagtaaaatgaattaataaatcatgatgtacagtatttcagacaatagaatactcgagagcaatagaaaataactactgttactagcaacaatata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74093871 318 + 122973662 ctgatgagactgtaaactgctattatctacactgggaaactatctgaaaatatcaactaaaactaaatatatat-------------------------------------------atatat--aacctatgaccccaaaactagacggttacatttatacccaagagaagtgcatgagcatttcccttgaaggacatgtatcagaacgtttacagcagcattagacatttcaaccaaaaacgaggggtgctgcaaatgtacttggacagtaaaatgaattaataaataatgatgtacagta-ttcagacaatagaatactccagagcaatagaaaataactactgttactagcaacaatata
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171330260 309 - 171630274 ctgatgggactgtgaactgcta-cgtctacgctgggaaactacctgaaaatatcaactaaaactaaatacatat---------------------------------------atgtatatat-aaacttatgacccctgaactccacaattacatttatacccaagagaagtgcgtaagcatttccctaaaaggacatgttccagag-ggttactgcaacattaaacatttcaaccaaaaactaggggtgctgccaatgtacctggacagtagaatgaattaataaatcacgatgtac-------------aaggaatgctccagagcaatagaaaataactactactactagcaacaacaCA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      159747 360 -    373274 ctgatgaggctgtaaactgcta-catctacactgggaaactacctgaaaatatcaactaaaactaaatatatatatatttattttatacatacattatatataaatatatataatgtatatataaaacttatgacccctaaactccacaattacatttataccc--gagaagtgcatgagcatttcccttaaaggacatgtaccagaatgtttatagcaacattaaacatttcaaccaaaaactaggggtgctgccaacgtacctggacagtaaaatgaattaataaatcatgatgtacggta-gtcatacaatggaatactccagagcaatagaaaataactaccgctactagcaacaatatA
i cebCap1.NW_016108108v1   C 0 I 4380
s aotNan1.NW_018494050v1       97050 318 -    285216 ctgatgagactgtaaactgcta-catctacactgggaaactacctgaaaatatcaactaaaactaaatacacat-------------------------------------------atatat-aaacttatgacccctaaactctacaattacatttacacccaagagaagtgcatgagcatttcccttaaaggacatgtaccagtatgtttacagcaacatcaaacatttcaacaaaaaactaggggtgctgccaatgtacctggatggtaaaatgaattaataaataatgatgtacagta-ttcatacaatggaatactccagagcaatagaaaataactactgctactagcaacaatatA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1483597 311 -   2232465 ctgatgagactgtaaactggtc-catctacactagaaagctatttacaaatagcaactaaaactaaatacacat-----------------------------------------------ac--catctatgaccccataactccacagctacatttatacccaaaagaaatgcatgtgcatatccattgaaagacatg-acagaaatgtttacagcagcattaggcatttcagtcccaaactaggagaactccaaaagtacatgga-ggtaaaatgaattaataaatagtgatatacagta-ttcatacaatggaaaactccagagcaatggaaataaactattgctataaacaacagtatA
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            158553 3955 -    375362 I
e colAng1.NW_012115566v1     1757079 7421 -   3067355 I
e manLeu1.NW_012104165v1     1883195 3451 +   2316924 I
e chlSab2.chr17             28220508 1556 -  71996105 I
e cerAty1.NW_012001495v1     1767034 2681 -   2157725 I
e macNem1.NW_012011356v1     1877194 2657 -   2996164 I
e macFas5.chr4              28901882 2652 - 170955103 I
e rheMac8.chr4              29213379 2656 + 172585720 I

a score=15912.000000
s hg38.chr6_GL000254v2_alt     58402 9 +   4827813 tagaaaatg
s panTro5.chr6              29029249 9 + 175400573 TACAAAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29273406 9 + 173848474 tagaaaatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5072043 9 +   6154872 tagaaaatg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74094189 9 + 122973662 tagaaaatg
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171330569 9 - 171630274 TAGAAAATG
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1       97368 9 -    285216 CAGAAAATG
i aotNan1.NW_018494050v1   C 0 I 10
s otoGar3.GL873742           1483908 9 -   2232465 CAGTTAAAG
i otoGar3.GL873742         C 0 I 5
e saiBol1.JH378348            158553 3955 -    375362 I
e cebCap1.NW_016108108v1      160107 4380 -    373274 I
e colAng1.NW_012115566v1     1757079 7421 -   3067355 I
e manLeu1.NW_012104165v1     1883195 3451 +   2316924 I
e chlSab2.chr17             28220508 1556 -  71996105 I
e cerAty1.NW_012001495v1     1767034 2681 -   2157725 I
e macNem1.NW_012011356v1     1877194 2657 -   2996164 I
e macFas5.chr4              28901882 2652 - 170955103 I
e rheMac8.chr4              29213379 2656 + 172585720 I

a score=12643.000000
s hg38.chr6_GL000254v2_alt     58411 12 +   4827813 aaggctgggcac
s panTro5.chr6              29029258 12 + 175400573 AAggctgggcgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29273415 12 + 173848474 aaggctgggcgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5072052 12 +   6154872 aaggctgggcgc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74094198 12 + 122973662 aaggctgggcac
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171330578 10 - 171630274 -Tggccatgca-
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1483922 12 -   2232465 AGAgccaggcgc
i otoGar3.GL873742         I 5 C 0
e saiBol1.JH378348            158553 3955 -    375362 I
e aotNan1.NW_018494050v1       97377 10 -    285216 I
e cebCap1.NW_016108108v1      160107 4380 -    373274 I
e colAng1.NW_012115566v1     1757079 7421 -   3067355 I
e manLeu1.NW_012104165v1     1883195 3451 +   2316924 I
e chlSab2.chr17             28220508 1556 -  71996105 I
e cerAty1.NW_012001495v1     1767034 2681 -   2157725 I
e macNem1.NW_012011356v1     1877194 2657 -   2996164 I
e macFas5.chr4              28901882 2652 - 170955103 I
e rheMac8.chr4              29213379 2656 + 172585720 I

a score=175342.000000
s hg38.chr6_GL000254v2_alt     58423 119 +   4827813 ggaggctcacgcctgtaatcccagcactttggaaagctgaggcgggcagat--cacgaagtcaggagatcgagaccatcctggctaaaaca------------------------gtgaaaccctgtctctactaaaaatacaaa
s panTro5.chr6              29029270 119 + 175400573 ggaggctcacgcctgtaatcccagcactttggaaagctgaggcgggcagat--catgaagtcaggagatcgagaccatcctggctaaaaca------------------------gtgaaaccctgtctctactaaaaatacaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29273427 119 + 173848474 ggaggctcacgcctgtaatcccagcactttggaaagctgaggcaggcagat--catgaagtcaggagatcgagaccatcctggctaaaaca------------------------gtgaaaccctgtctctactaaaaatacaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5072064 119 +   6154872 ggaggctcacgcctgtaatcccagcactttggaaagctgaggcgggcagat--cacgaagtcaggagatcgagaccatcctggctaaaaca------------------------gtgaaaccctgtctctactaaaaatacaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74094210 119 + 122973662 agaggctcaagcctgtaatcccagcactttgggaagccgaggtggacagat--cacaaggtcaggagatcgagaccatcctggctaaaacg------------------------gtgagaccctgtctgtactaaaaatacaaa
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171330588 134 - 171630274 ggcggctcacacctgttatcccagcactttgagaggcagaggccag---------tgaggtcaggagttcaaggccagcatgacgaaACTCGCCAAACAAACGGGGTTCGAGCAGGAGAAACTCTGTCTT--CCAAAAATACAAA
i calJac3.chr4             C 0 I 8906
s aotNan1.NW_018494050v1       97387 110 -    285216 ggtggctcatgcctgttatcccagcactttgagaggccgaggccag---------tgaggtcaggagttcaaggccagcatgaccaacatt------------------------gagaaactctgtctctaccaaaaataca--
i aotNan1.NW_018494050v1   I 10 C 0
s otoGar3.GL873742           1483934 106 -   2232465 agtggctcatgtctgtaatcctaacactctgggaggctgacgcaggtgaactgcctgagctcagagtttccagaccaacctgagccaga--------------------------gcaagaccttatctcta-------------
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            158553 3955 -    375362 I
e cebCap1.NW_016108108v1      160107 4380 -    373274 I
e colAng1.NW_012115566v1     1757079 7421 -   3067355 I
e manLeu1.NW_012104165v1     1883195 3451 +   2316924 I
e chlSab2.chr17             28220508 1556 -  71996105 I
e cerAty1.NW_012001495v1     1767034 2681 -   2157725 I
e macNem1.NW_012011356v1     1877194 2657 -   2996164 I
e macFas5.chr4              28901882 2652 - 170955103 I
e rheMac8.chr4              29213379 2656 + 172585720 I

a score=211841.000000
s hg38.chr6_GL000254v2_alt     58542 184 +   4827813 aaattagctgggcgtggtggatggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctggtaggcagagcttgcagtaagccaagatcgcgccactgca----ctccagcctgggcgac-agagcaagtctccaccttgaaaaaaaaaaaaagaa-----gaaaaaagaaaagaa
s panTro5.chr6              29029389 189 + 175400573 aaattagctgggcgtggtggatggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctggtaggcagagcttgcagtaagccaagatcgcgccactgca----ctccagcctgggcgac-agagcaagtctccaccttgaaaaaaaaaaaaaaaaagaaagaaaaaagaaaagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29273546 186 + 173848474 aaattagctgggcgtggtggatggcacctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacctggtaggcagagcttgcagtaagccaagatcgcgccactgca----ctccagcctgggcgac-agagcaagtctccaccttagaaaaaaaaaaaaaga---aagaaaaaagaaaagaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5072183 183 +   6154872 aaattagctgggagtggtggacggcacctctagtcccagctgctcgggaggctgaggcaggagaatggcgtgaacccgggaggcagagcttgcagtaagccaacatcgcgccactgca----ttccagcctgggcgac-agagcaagtctccacctcgaaaaaaaaacggaaag------aaaaaagaaaagaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74094329 167 + 122973662 aaattagctgggcgtggtggacggcacctgtagtcccagctactggggagactgaggcaggagaatggtgtgaacccgggaggtggagcttgcagtgagccgagatggcgccactgcg----ctccagcctcagtgac-agagcaagtctccacctcg----------------------aaaaaagaaaagaa
i nomLeu3.chr1a            C 0 C 0
s aotNan1.NW_018494050v1       97497 179 -    285216 aaatcagccaggcgtggtggcccatgcctttaatctcagctacttgggagggtgaggcaggagaatcgcttgaacctggaaggtggaggttgcagtgagctcaggtcataccactgta----cttcaatctgggaaacaagagcaaaactccatctcaaaaaagaaaag-----------aaaaaagaaaagaa
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1484040 163 -   2232465 aaaatagcttgtcgttgtggtggttgcctttagtcacaactac---------tgaggtaagagaattgcttcagcccaagagtttgaggttgctgtcagct----tgatgccatggcactctctctaccaaggggaaa-aaagtgagactccttctcaaaaaaaaA--------------AAAAAAAAAAA---
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            158553 3955 -    375362 I
e cebCap1.NW_016108108v1      160107 4380 -    373274 I
e calJac3.chr4             171330722 8906 - 171630274 I
e colAng1.NW_012115566v1     1757079 7421 -   3067355 I
e manLeu1.NW_012104165v1     1883195 3451 +   2316924 I
e chlSab2.chr17             28220508 1556 -  71996105 I
e cerAty1.NW_012001495v1     1767034 2681 -   2157725 I
e macNem1.NW_012011356v1     1877194 2657 -   2996164 I
e macFas5.chr4              28901882 2652 - 170955103 I
e rheMac8.chr4              29213379 2656 + 172585720 I

a score=21003.000000
s hg38.chr6_GL000254v2_alt     58726 11 +   4827813 aatgaatctaa
s panTro5.chr6              29029578 11 + 175400573 aaTGAATCTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29273732 11 + 173848474 aatgaatctaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5072366 11 +   6154872 aatgaatctaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74094496 11 + 122973662 aatgaatctaa
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28222064 11 -  71996105 aatgaatctaa
i chlSab2.chr17            I 1556 I 2
s aotNan1.NW_018494050v1       97676 11 -    285216 aaTGTATCTAA
i aotNan1.NW_018494050v1   C 0 I 18
s otoGar3.GL873742           1484203  8 -   2232465 ---TCATCTGA
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            158553 3955 -    375362 I
e cebCap1.NW_016108108v1      160107 4380 -    373274 I
e calJac3.chr4             171330722 8906 - 171630274 I
e colAng1.NW_012115566v1     1757079 7421 -   3067355 I
e manLeu1.NW_012104165v1     1883195 3451 +   2316924 I
e cerAty1.NW_012001495v1     1767034 2681 -   2157725 I
e macNem1.NW_012011356v1     1877194 2657 -   2996164 I
e macFas5.chr4              28901882 2652 - 170955103 I
e rheMac8.chr4              29213379 2656 + 172585720 I

a score=789984.000000
s hg38.chr6_GL000254v2_alt     58737 329 +   4827813 ttttttt----aacaaaaattaagtgaaagaatccatactcaaatgagtacagatttgctgtggtttgaaagtgtcccctccaaagcttaggtgtcacc-atgtgataattatcaagacatagggcctttaagaa--gattaagccatgagggttccttcctcatgaataatattaggtacccttataataagagttgacaaaggaagttcatctctctattgccttcagttttctgccatgtgagaacacaacaaaaaggccatcaccagacatgaga-gccagtgacttgatcttgaacttcccagcctccagaactgtgagaaaat--gtttctgg-------------------------------------------
s panTro5.chr6              29029589 331 + 175400573 TTTTTTT--TTAACAAAAATTAAGTGAAAGAATCCATACTCAAATGAGTACAGATTtactgtggtttgaaagtgtcccctccaaagcttaggtgtcacc-atgtgataattatcaagacatagggcctttaagaa--gattaagccatgagggttccttcctcatgaataatattaggtacccttataataagagttgacaaaggaagttcatctctctattgccctcagttttctgccatgtgagaacacaacaaaaaggccatcaccagacatgaga-gccagtgccttgatcttgaacttcccagcctccagaactgtgagaaaat--gtttctgg-------------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29273743 330 + 173848474 ttttttt---taacaaaaattaagtgaaagaatccatactcaaatgagtacaGATTtactgtggtttgaaagtgtcccctccaaagcttaggtgtcacc-atgtgataattatcaagacatagggcctttaagaa--gattaagccatgagggttccttcctcatgaataatattaggtacccttataataagagttgacaaaggaagttcatctctctattgccctcagttttctgccatgtgaaaacacaacaaaaaggccatcaccagacatgaga-gccagtgccttgatcttgaacttcccagcctccagaactgtgagaaaat--gtttctgg-------------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5072377 335 +   6154872 ttttattttttaacaaaaattgagtgaaagaatccatactcaaatgagtacaGATCtgctatggtttgaaagtgtcccctccaaagcttaggtgtcacc-atgtgataattatcaagagatagggcctttaagaa--gattaagccatgagggttccttcctcatgaataatattaggtacccttataataagagttgacaaaggaagttcatctctctattgccctcagttttatgccgtgtgaggacacaacaaaaaggccatcaccagacatgaga-gccagtgccttgatcttgaacttcccagcctgcagaactgtgagaaaataagtttctgg-------------------------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74094507 327 + 122973662 ttttttt-tttaacaaaaattgagtgaaggaatccatactcaaatgagtacaGATTTGCTATGGTTTGAAA-------TCACATGGCTTAGGTGTCGCC-atgttataattatcaagagatagggccgttaagaa--gattaagccatgagggttccttcctcatgaataatattaggtacccttataataagacttgataaaggaagttcatctctctattgccctcagttttctgccatgtgaggacaccacaaaaaggccattaccagacatgaga-gccagtgccttgatcttggacttcccagcctccagaactgtgagaaaataagtttctgg-------------------------------------------
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28222077 331 -  71996105 ttttttt----cacagaaattgagtaaaagaatccatacacagatgagtacaGATTtgctatggtttgaaagtgtcccctccaaagcttaggtgtcacc-atgtgataattatcaagagatagggcctttaagaa--gattaagccatgagggttccttcctcatgaataatattaggtacccttataataagacttgacaaaggaaattcatctctctattgccctcagttttctgccatgtgaggacacaacaaaaaggccatcaccagacaccaga-gccagtgccttgatcttggacttcccagcctccagaactgtgagaaaataagtttctgg-------------------------------------------
i chlSab2.chr17            I 2 C 0
s colAng1.NW_012115566v1     1764500 331 -   3067355 ttttttt----tacagaaattgagtaaaagaatccatactcagatgagtacaGATTtgctatggtttgaaagtgtcccctccaaagcttaggtgtcacc-atgtgataattatcaagagatagggcctttaagaa--gattaagccatgagggttccttccgcatgaataatattaggtacccttataataagacttgacaaaggaagttcatctctctattgccctcagttttctgccatgtgaggacacaacaaaaaggccgtcaccagacagcaga-gccagtgccttgatcgtggacttcccagcctccagaactgtgagaaaataagtttctgg-------------------------------------------
i colAng1.NW_012115566v1   I 7421 C 0
s aotNan1.NW_018494050v1       97705 317 -    285216 ttttttt----tACAAAAATTGAGTGAAAGAATCCATACTCAAATGAGTAAATATTtgctatggtttgaaagtgtcccctccaaagcttaggtgttgga-atgtgataattatcaagagataggacctttaagaagtgattaagccatgagggtttcttcctcatgaataatatcaggtacctttataataggacttcacaaaggaagttcatctctatgttgccctcagttttctgccacgtgaggacacaa-aaagaggccaccaccaga----------------cttgatcttggacttcccagcccccagaactgtgagaaaataagtttctgt-------------------------------------------
i aotNan1.NW_018494050v1   I 18 C 0
s otoGar3.GL873742           1484211 293 -   2232465 CTTTTTT--------AATGTTAAGTGAAAGAATGCATACTTAAATGA-TACATGTTtgctgtgatttgaaagtgtctcttccaaaattcaggtactgccaatgtgatag-tatgaagaggt-----------gag--gcTCA----------------TCCTCA-AAATAGTATTAGGTTCTCTTGCTGT-------------------------------------------------GtgtgaggacacatcaagaagaccttcatcagacatcagatgaaaatgccttgatcttgggtttttccagctttagaactgtgaaaaagtatatttctgatttttataaattaccTGTAAAATGGACCAAGATAATCTTTGAg
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            158553 3955 -    375362 I
e cebCap1.NW_016108108v1      160107 4380 -    373274 I
e calJac3.chr4             171330722 8906 - 171630274 I
e manLeu1.NW_012104165v1     1883195 3451 +   2316924 I
e cerAty1.NW_012001495v1     1767034 2681 -   2157725 I
e macNem1.NW_012011356v1     1877194 2657 -   2996164 I
e macFas5.chr4              28901882 2652 - 170955103 I
e rheMac8.chr4              29213379 2656 + 172585720 I

a score=8447.000000
s hg38.chr6_GL000254v2_alt     59066 10 +   4827813 gcctggtgca--------------------
s panTro5.chr6              29029920 10 + 175400573 gcctggtgca--------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29274073 10 + 173848474 gcctggtgca--------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5072712 10 +   6154872 gcctggcgca--------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74094834 10 + 122973662 gcctggcacg--------------------
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28222408 10 -  71996105 gcctggcacg--------------------
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1764831 10 -   3067355 gcccggcaca--------------------
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            215009 10 +    375362 gccaggagca--------------------
i saiBol1.JH378348         T 18492 C 0
s aotNan1.NW_018494050v1       98022  9 -    285216 -GGGGGGTca--------------------
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1484504 30 -   2232465 gtcttactcaattcctcaggctagagtgca
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      160107 4380 -    373274 I
e calJac3.chr4             171330722 8906 - 171630274 I
e manLeu1.NW_012104165v1     1883195 3451 +   2316924 I
e cerAty1.NW_012001495v1     1767034 2681 -   2157725 I
e macNem1.NW_012011356v1     1877194 2657 -   2996164 I
e macFas5.chr4              28901882 2652 - 170955103 I
e rheMac8.chr4              29213379 2656 + 172585720 I

a score=71133.000000
s hg38.chr6_GL000254v2_alt    59076 22 +   4827813 gtggc----tgtctcctgtaatccca
s panTro5.chr6             29029930 22 + 175400573 gtggc----tgtctcctgtaatccca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29274083 22 + 173848474 gtggc----tgtctcctgtaatccca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5072722 22 +   6154872 gtggc----tgtctcctgtaatccca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74094844 22 + 122973662 gtggc----tgtttcctgtaatccca
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            28222418 22 -  71996105 gtggc----tgtttcctgtaatcaca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    1764841 22 -   3067355 gtggc----tctttcctgtaatcgca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4               297390 22 + 171630274 gtggc----tcacacctgtaatgcca
i calJac3.chr4             T 4472 C 0
s saiBol1.JH378348           215019 22 +    375362 gtggc----tcacacctgtaatgcca
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      98031 22 -    285216 gtggc----tcatgcctgtaatcact
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742          1484534 26 -   2232465 gtggcataatgctcaccataatctca
i otoGar3.GL873742         C 0 I 343
e cebCap1.NW_016108108v1     160107 4380 -    373274 I
e manLeu1.NW_012104165v1    1883195 3451 +   2316924 I
e cerAty1.NW_012001495v1    1767034 2681 -   2157725 I
e macNem1.NW_012011356v1    1877194 2657 -   2996164 I
e macFas5.chr4             28901882 2652 - 170955103 I
e rheMac8.chr4             29213379 2656 + 172585720 I

a score=310142.000000
s hg38.chr6_GL000254v2_alt    59098 97 +   4827813 gggttttgggaggcc-aaggtggatggatcacctgaggtcaggagttcgagaccagcctggcaaacatggtgaaaccccatctctactaaaa---atacag
s panTro5.chr6             29029952 97 + 175400573 gggttttgggaggcc-aaggtggatggatcatctgaggtcaggagttcaagaccagcctggcaaacatggtgaaaccccatctctactaaaa---atacag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29274105 97 + 173848474 gggttttgggaggcc-aaggtggatggatcatctgaggtcaggagttcaagaccagcctggcaaacatggtgaaaccccatctctactaaaa---atacag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5072744 97 +   6154872 gggttttgggaggcc-aaggtggatggatcacctgaggtccggagttcaagaccagcctagcaaacatggtgaaacctcatctctactaaaa---atacag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74094866 98 + 122973662 gcgttttgggaggccaaaggtggatggagcacctgaggtcaggagttcaagaccagcctagcaaacatggtgaaaccccatctctactaaaa---atacag
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            28222440 97 -  71996105 gcattttgggaggcc-aaagtggatggatcacctgaggtcaggagtccaagaccagcctggcaaacatggtgaaaccccatctctactaaaa---acacag
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    1764863 97 -   3067355 gcattttggaaggcc-aaggtggatggatcacctgagatcaggagttcaagatcaccctggcaaacatggtgaaaccccatctctactaaaa---atacag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4               297412 98 + 171630274 gcactttgggaggtc-gaagtgggtggttcac--aaaatcaagagatcgagaccatcctgaccaacatgctgaaaccccatctctactaaaaattaaaaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348           215041 95 +    375362 gcactttgggaggtc-aaagtgggtggatcac--aaaatcaagagatcaagaccatcctggccaacatggtgaaaccccatctcttctaaaa---aaaaaa
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      98053 93 -    285216 tcactttgggaggcc-aaggcaagcagatcacctgaggtcagaagttcaaga----cctggcaaacatggtgaaaccccatctctactaaaa---atacag
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742          1484560 343 -   2232465 I
e cebCap1.NW_016108108v1     160107 4380 -    373274 I
e manLeu1.NW_012104165v1    1883195 3451 +   2316924 I
e cerAty1.NW_012001495v1    1767034 2681 -   2157725 I
e macNem1.NW_012011356v1    1877194 2657 -   2996164 I
e macFas5.chr4             28901882 2652 - 170955103 I
e rheMac8.chr4             29213379 2656 + 172585720 I

a score=43819.000000
s hg38.chr6_GL000254v2_alt    59195 10 +   4827813 aaaaattagc
s panTro5.chr6             29030049 10 + 175400573 aaaaattagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29274202 10 + 173848474 aaaaattagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5072841 10 +   6154872 aaaaattagc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74094964 10 + 122973662 aaaaattagc
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            28222537 10 -  71996105 aaaaattagc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    1764960 10 -   3067355 aaaaattagc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4               297510 10 + 171630274 aaaaattatc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348           215136 10 +    375362 aaaaattatc
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      98146 10 -    285216 aaaaattagc
i aotNan1.NW_018494050v1   C 0 I 3087
s otoGar3.GL873742          1484903 10 -   2232465 aaaaaatggc
i otoGar3.GL873742         I 343 C 0
e cebCap1.NW_016108108v1     160107 4380 -    373274 I
e manLeu1.NW_012104165v1    1883195 3451 +   2316924 I
e cerAty1.NW_012001495v1    1767034 2681 -   2157725 I
e macNem1.NW_012011356v1    1877194 2657 -   2996164 I
e macFas5.chr4             28901882 2652 - 170955103 I
e rheMac8.chr4             29213379 2656 + 172585720 I

a score=564355.000000
s hg38.chr6_GL000254v2_alt    59205 261 +   4827813 tgggcgtggtagcattcgcctgtaatcccagctacccaggaagctgagacaggagaattgcttgaatccgggaggcagaggttgcagtgagccaagactg-----------------------agccac-tgcactccaacctgggcaacaagagtgaaactctgtc--Aggaagtgaagggaaggga-----agg----------------------------------------------------------------------------------------------------gaagggaaggga--agggttctgttcgttacaaattaccagtcttgagtgattttgtagcagcccaaaatagactacgatgatattatatgatcccat
s panTro5.chr6             29030059 256 + 175400573 tgggcgtgctagcattcgcttgtaatcccagctacccaggaagctgagacaggagaattgcttgaatccgggaggcagaggttgcagtgagccaagactg-----------------------agccac-tgcactccaacctgggcaacaagagtgaaactctgtc--Aggaagtgaagggaaggga-----agg----------------------------------------------------------------------------------------------------gaaggaaaggg-------ttctgttcgttacaaattaccagtcttgagtgattttgtagcagcccaaaacagactacgaTGatattatatgatcccat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29274212 256 + 173848474 tgggcgtgctagcattcgcttgtaatcccagctacccaggaagctgagacaggagaattgcttgaatccgggaggcagaggttgcagtgagccaagactg-----------------------agccac-tgcactccaacctgggcaacaagagtgaaactctgtc--Aggaagtgaagggaaggga-----agg----------------------------------------------------------------------------------------------------gaaggaaaggg-------ttctgttcgttacaaattaccagtcttgagtgattttgtagcagcccaaaacagactacgaTGatattatatgatcccat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5072851 344 +   6154872 tgggcgtggtggcattcgcctgtaatcccagctacccaggaagctgagacaggaaaattgcttgaatccgggaggcagaggttgcagtgagccaagactg-----------------------agccac-tgcactccaacctgggcaacaagagtgaaactctgtc--Aggaagggaagggaaggga-----agggaagagaagaagggaagggaagggaaggagggaagggaagggaagggaagggaagggaagggaaggaaggg-----------------aagggaagggaagaagggaaggga--agAGttctggtcgttacaaattaccagtcttgagtgattttgtagcagcccaaaatagactacgaTGatattatatgatctcat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74094974 301 + 122973662 tgggcatggtggcatttgcctgtaatcccagctacccaggaagctgagagaggagaattgcttgaatctgggaggcagaggttgcagtgagccaagactg-----------------------tgccac-tgcactccagcctgggcaacacgagtgaaactctgtc--Aggaagtgaagggaaggga-----agg-------------------------------gaaggtaagggaaggtaagggaagggaagggaagggaaag-----------------------------gaagggaaggga--agggttctgttcgttacgaattaccagtcttgagtgattttgtagcagcccaaaatagactatgaTGATATTATATAATCCCAT
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            28222547 306 -  71996105 caggtgtggtggcactcgcctgtaatcccagctacccaggaagttgggacaggagaatcgcttgaatcc-agaggcttaggttgcagtgagccaagatgg----------------------------------ctccagcctgggcaacaagagtgaaactctgttgaaagaaaagaaaagaaaaga-----aaG--------------------------------------agggaggaaaggagggaaggaaggaaggaagTTTCTGTTCGTTTCAAATTACC----AGGAAGGAAGGAAGgaaataagtttctgttggttacaaattaccagtcttg-gtgattttgtagcagcccaaaA-----TACGATGatattatatgatcccac
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    1764970 349 -   3067355 ctggtgtggtggcactcgcctgtaatcccagctacccagggagttgagacaggagaactgcttgaatcc-agaggcgtaggttgcagtgagccaagatggctccagcgtggggaacaagagtgaaactc-tgcactccagcctgggcaacaaaagtgaaactctgttgaaagaaaagaaaagaaaagaaaaggaag--------------------------------------agggagggaaggaggaaaggaaggaaggaagTTTCTGTTCGTTACAAATTACCAGGAAGGAAGGAAGGAAGgaaataagtttctgttggttacaaattaccagtcttgagtgattttgtagcagcccaaaA-----TACGATGatattatatgatcccac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4               297520 258 + 171630274 tgggcatgatggcacatgcctgtagtcccagctactctggaagctgaggcaggagaatcacgtaaaccaaggaggcggaggttgccatgagccgagatca-----------------------cgccacttatactccagcctgggcgacaagagtgaaactctgtctcagaaaagaaaaaaaaaaga-----aaa----------------------------------------------------------------------------------------------------gaaaagaaGt--------ttctgtttattacaaattaccagtcttgaatgtttttgtagcagcccaaaatagactaagaTGATAGTATATGATTCCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348           215146 250 +    375362 tgggcatggtggcacacgcctgtagtcccagctactctggaggctgaggcaggagaatcacttaaacccaggaggcggaggttgccgtgagctgagatca-----------------------tgccacttgtactccagcctgggcaacaagagtgaaactctgtctcaaaaaagaaa--------g-----aaa----------------------------------------------------------------------------------------------------gaaaataagt--------ttctgtttattacaaattaccagtcttgagtgattttgtagcagcccaaaataggctaagGTGatagtatatgattccat
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742          1484913 149 -   2232465 cgggcgttgtggcgggcgcctgtggtcccagctgcttgggaggcggaggcaggagacttgcttgagcccaggagttggaggttgctgtgagctgtaa--------------------------tgccac-agcactctgcccaggggga-gagcttgaggctctgtctcaaaaaaaa-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      98156 3087 -    285216 I
e cebCap1.NW_016108108v1     160107 4380 -    373274 I
e manLeu1.NW_012104165v1    1883195 3451 +   2316924 I
e cerAty1.NW_012001495v1    1767034 2681 -   2157725 I
e macNem1.NW_012011356v1    1877194 2657 -   2996164 I
e macFas5.chr4             28901882 2652 - 170955103 I
e rheMac8.chr4             29213379 2656 + 172585720 I

a score=35490.000000
s hg38.chr6_GL000254v2_alt    59466 5 +   4827813 ttata
s panTro5.chr6             29030315 5 + 175400573 ttata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29274468 5 + 173848474 ttata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5073195 5 +   6154872 ttata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74095275 5 + 122973662 TTATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29216035 5 + 172585720 TTATA
i rheMac8.chr4             I 2656 C 0
s macFas5.chr4             28904534 5 - 170955103 ttata
i macFas5.chr4             I 2652 C 0
s macNem1.NW_012011356v1    1879851 5 -   2996164 TTATA
i macNem1.NW_012011356v1   I 2657 C 0
s chlSab2.chr17            28222853 5 -  71996105 ttata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1    1886646 5 +   2316924 TTATA
i manLeu1.NW_012104165v1   I 3451 C 0
s colAng1.NW_012115566v1    1765319 5 -   3067355 ttata
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4               297778 5 + 171630274 TTATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348           215396 5 +    375362 ttata
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742          1485062 0 -   2232465 C
e aotNan1.NW_018494050v1      98156 3087 -    285216 I
e cebCap1.NW_016108108v1     160107 4380 -    373274 I
e cerAty1.NW_012001495v1    1767034 2681 -   2157725 I

a score=1584453.000000
s hg38.chr6_GL000254v2_alt    59471 229 +   4827813 ttatttaaaacataagaaaaataatc-tatggaggtggaggtcagagagt-ta--ggataattgaaatga-ggcaaaaggcagctgtt-ggttgctg-aaaaattcagtat-cttggcctgaattttggttatatA--TAAT-AAGCCGTAAGCTGAA----TAGGTTTCATGTGTTTTATTTTATATAAATGAAGGCTTAAATTT---AAAT--------------------------------------------------------------------------ACAAGAA----AAAAAA-A----GGTTTTCCTAAGTACTTCCT
s panTro5.chr6             29030320 228 + 175400573 ttatttaaaacataagaaaaataatc-tatggaggtggaggtcagaGAGT-TA--GGATAATTGAAATGA-GGCAAAAGGCAGCTGTT-GGTTGCTG-AAAAATTCAGTAT-CTTGGCCTGAATTTTGGTTATTTA----AT-AAGCCGTAAGCTGAA----TAGGTTTCATGTGTTTTATTTTATATAAATGAAGGCTTAAATTT---AAAT--------------------------------------------------------------------------ACAAGAA----AAAAAA-A---AGGTTTTCCTAAGTACTTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29274473 227 + 173848474 ttatttaaaacataagaaaaataatc-tatggaggtggaggtcagaGAGT-TA--GGATAATTGAAATGA-GGCAAAAGGCAGCTGTT-GGTTGCTG-AAAAATTCAGTAT-CTTGGCCTGAATTTTGGTTATTTA----AT-AAGCCGTAAGCTGAA----TAGGTTTCATGTGTTTTATTTTATATAAATGAAGGCTTAAATTT---AAAT--------------------------------------------------------------------------ACAAGAA----AAAAAA-A----GGTTTTCCTAAGTACTTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5073200 228 +   6154872 ttatttaAAACATAAGAAAAATAATC-TATGGAGGTGGAGGTCAGAGAGT-TA--GGATAATTGAAAAGA-GGCAAAAGGCAGCTGTT-GGTTGCTG-AAAAATTCAGTAT-CTTGGCCTGAATTTTGGTTATATA--TAAT-AAGCCGTAAGCTGAA----TAGGTTTCATGTGTTTTATTTTATATAAATGAAGGCTTAAATTT---AAAT--------------------------------------------------------------------------ACAAGAA----AAAAAA------GGATTTCCTAAGTACTTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74095280 229 + 122973662 TTATTTAAAATATAAGACAAATAGTC-TATGGAGGTGGAGGTCAGAGAGT-TA--GGATAATTGAAATGA-GGCAAAAGGCAGCTGTT-GGTTGCTG-AAAAATTCAGTA--CTTGACCTGAATTTTGGTTATATATGTAAT-AAGCCGTAAGCTGAA----TAGGTTTTATGCGTTTTATTTTATATAAATGAAGGCTTAAATTT---AAAT--------------------------------------------------------------------------ACAAGAA----AAAAAA------GCTTTTCCTAGATACTTCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29216040 235 + 172585720 TTATTTAAAACATAACGAAAATAATC-TATGGAGGTGGATGTCAGAGAGT-TA--GGATGATTGAAATGA-GGCAAAAGGCAGCTGTT-GGTTGCTG-AAAAATTCAGTAT-CTTGGTCTGAGTTTTGGTTATATATATAAT-AAGCCATAAACTGAA----TAGATTTCATGCGTTTTATTTTATATAAATGAAGGCTTAAATTT---AAAT--------------------------------------------------------------------------ACAAAAA-AACAAAAAG-A---AGGTTCTCCTAGATACTTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             28904539 236 - 170955103 ttatttaaaacataacgaaaataatc-tatggaggtggatgtcagagagt-ta--ggatgattgaaatga-ggcaaaaggcagctgtt-ggttgctg-aaaaattcagtat-cttggtctgagttttggttatatatataat-aagccataaactgaa----tagatttcatgcgttttattttatataaatGAAGGCTTAAATTT---AAAT--------------------------------------------------------------------------ACAAAAATAAAAAAAAG-A---AGGTTCTCCTAGATACTTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    1879856 310 -   2996164 TTATTTAAGACATAACGAAAATAATC-TATGGAGGTGGATGTCAGAGAGT-TA--GGATGATTGAAATGA-GGCAAAAGGCAGCTGTT-GGTTGCTG-AAAAATTCAGTAT-CTTGGTCTGAGTTTTGGTTATATATATAAT-AAGCCATAAACTGAA----TAGATTTCATGCGTTTTATTTTATATAAATGAAGGCTTAAATTT---aaatggaaaacacaagaaagcaagggttgcagtcctagtttctgacaaaacagactttaaaccaacaaagattaaaaaaaaaaaaaaaAAAAAAG-A---AGGTTCTCCTAGATACTTCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1    1769715 237 -   2157725 ttatttaAAACATAACGAAAATAATCATATGGAGGTGGATGTCAGAGAGTGTAGTGGATGA-TGAAATGAGGGCAAAAGGCAGCTGTTCGGTTGCTGAAAAAATTCAGTATCCTTGGTCTGAGTTTTGGTTATATATATAATAAAGCCATAAACTGAA----TAGG-TTCATGCGTTTTATTTTATATAAGTGAAGGCTTAAATTT---AAAT--------------------------------------------------------------------------ACAAAAA------AAAG-A---AGGTTCTCCTAGATACTTCCT
i cerAty1.NW_012001495v1   I 2681 C 0
s chlSab2.chr17            28222858 235 -  71996105 ttatttaaagcataaggaaaataatc-tatggaggtggacgtcagagagg-ta--gaataattgaaatga-ggcaaaaggcagctgtt-ggttgctg-aaaaattcagtat-cttggtctgagttttggttatatatatagt-aagccataaactgaa----taggtttcatgcattttattttatataaatgaaggcttaaatttaaaaaaA--------------------------------------------------------------------------AAAAAAA----AAAAAA-A---AGGTTCTCCTAGATACTTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1    1886651 232 +   2316924 TTATTTAAAACATAACGAAAATAATC-TATGGAGGTGGATGTCAGAGAGT-TA--GGATGATTGAAATGA-GGCAAAAGGCAGCTGTT-GGTTGCTG-AAAAATTCAGTAT-CTTGGTCTGAGTTTTGGTTATATATATAAT-AAGCCATAAACTGAA----TAGGTTTCATGCGTTTTATTTTATATAAATGAAGGCTTAAATTT---AAAT--------------------------------------------------------------------------ACAAAAA----AAAAAG-A---AGGTTCTCCTAGATACTTCCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1    1765324 235 -   3067355 ttatttaaaacataaggaaaataatc-tatggaggtggaggtcagaGAGT-TA--GGATAATTGAAATGA-GGCAAAAGGCAGCTGTT-GGTTGCTG-AAAAATTCAGTAT-CTTGGTCTGAGTTTTGGTTATATATATAAT-AAGCCATAAGCTGAA----TAGGTTTCATGCGTTTTATTTTATATAAATGAAGGCTTAAATTT---AAAT--------------------------------------------------------------------------ACAAGAA-AAAAAAAAG-A---AGGTTCTCCTAGATACTTCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4               297783 228 + 171630274 TTATTTAAAACATAAGAAAAATAATC-TACAGAGACAGAGGCCAGAGAGA-TT--CAATAATTGGGTTGA-GGCAAAAGGCAGCTCTT-GGGTGCTG-AAAACTTCAGTAT-CTTGGTTTGAGTTTTGATTATATATATAAT-AAGCCATAAGCTGAA----TAGGCTTTATGCATTTTATCTTACATAAGTGAAGACTTAAATTT---AAAA--------------------------------------------------------------------------ACAAGAA----AA-----A---TGGATATTCTAAATACTTCCT
i calJac3.chr4             C 0 T 62542
s saiBol1.JH378348           215401 229 +    375362 ttatttaaaa-ataagaaaaataatc-tacagagacagaggccagaaAAT-TT--CAATAACTGGGGTGA-GGCAAAAGGCAGCTCTT-GGGTG-TG-AAAACCTCAGTAT-CTTGGTTTGAGTTTTGAT--TATGTATAAT-AAGCCATAAGCCGAA----TAGGTTTTATGCATTTTATTTTACGTAAATGAAGACTTAAATTT---AAAA--------------------------------------------------------------------------ACAAGAA----AAAAAGGA---AGGATCTTCTAGATACTTCCT
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742          1485062 207 -   2232465 ------aaaaaaaagaaaaaataatt-tatggtgatagagctcagatagt-gg--GATTAATTGACATGA-GGCACAAGA----------------G-AAA-----------CTTGGTCTGAGTGTTGGTAACATATATAAT-AACCCATAACCTGAATAATTAAGTTTTATGCATTTTACTTTATGTAAATGAA-ACTTAAATTT---AAAT--------------------------------------------------------------------------AACAATA----AAAGAA-ACACAAATGTTCTTGGATGCCTCCT
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      98156 3087 -    285216 I
e cebCap1.NW_016108108v1     160107 4380 -    373274 I

a score=43869.000000
s hg38.chr6_GL000254v2_alt    59700 8 +   4827813 ---ATCCTCCA
s panTro5.chr6             29030548 8 + 175400573 ---ATCCTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29274700 8 + 173848474 ---ATCCTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5073428 8 +   6154872 ---ATCCTCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74095509 8 + 122973662 ---ATCCTCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29216275 8 + 172585720 ---ATCCTCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             28904775 8 - 170955103 ---ATCCTCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    1880166 8 -   2996164 ---ATCCTCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1    1769952 8 -   2157725 ---ATCCTCCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17            28223093 8 -  71996105 ---ATCCTCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1    1886883 8 +   2316924 ---AACCTCCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1    1765559 8 -   3067355 ---ATCCTCCA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348           215630 8 +    375362 ---GGCCACCA
i saiBol1.JH378348         C 0 T 61183
s otoGar3.GL873742          1485269 8 -   2232465 GGGATCCA---
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      98156 3087 -    285216 I
e cebCap1.NW_016108108v1     160107 4380 -    373274 I
e calJac3.chr4               298011 62542 + 171630274 T

a score=193890.000000
s hg38.chr6_GL000254v2_alt    59708 45 +   4827813 GTA--CATTCTCTCTCTTCCTT--AGGGttgttttgt-tttgttttgttg
s panTro5.chr6             29030556 40 + 175400573 GTA--CATTCTCTCTCTTCCTT--AGGGttgttttgt-tttgtt-----g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29274708 40 + 173848474 GTA--CATTCTCTCTCTTCCTT--AGGGttgttttgt-tttgtt-----g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5073436 40 +   6154872 GTA--CATTCTCTCTCTTCCTT--AGGGTTGTTTTGT-TTTGTT-----C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74095517 45 + 122973662 GTA--CATTCTGTCTCTTCCTT--GGGGttgttttgt-tttgttctgttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29216283 37 + 172585720 GCA--CATTCTCTCTCTTCTTT--AGGGttgttttgt-ttt--------g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             28904783 37 - 170955103 GCA--CATTCTCTCTCTTCTTT--AGGGttgttttgt-ttt--------g
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    1880174 37 -   2996164 GCA--CATTCTCTCTCTTCTTT--AGGGttgttttgt-ttt--------g
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1    1769960 42 -   2157725 ACAAGCATTCTCTCTCTTCTTTTAGGGGTTGTTTTGTGTTT--------G
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17            28223101 37 -  71996105 GCA--CATTCTCTCTCTTCTTT--AGGGTTGTTTTGT-TTT--------G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1    1886891 37 +   2316924 GCA--CATTCTCTCTCTTCTTT--AGGGttgttttgt-ttt--------g
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1    1765567 37 -   3067355 GCA--CATTCTCTCTCTTTCTT--AGGGttgttttgt-ttt--------g
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1485277 45 -   2232465 GTG--CATTCTATCTTTTCTCT--GGTGTTTTTTTTT-TTTTTTAAGTTG
i otoGar3.GL873742         C 0 I 724
e saiBol1.JH378348           215638 61183 +    375362 T
e aotNan1.NW_018494050v1      98156 3087 -    285216 I
e cebCap1.NW_016108108v1     160107 4380 -    373274 I
e calJac3.chr4               298011 62542 + 171630274 T

a score=112882.000000
s hg38.chr6_GL000254v2_alt    59753 20 +   4827813 agacggagtct-cgctctgtc
s panTro5.chr6             29030596 20 + 175400573 agacggagtct-cgctctgtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29274748 20 + 173848474 agacggagtct-cgctctgtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5073476 20 +   6154872 AGACGGAGTCT-CGCTCTGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74095562 20 + 122973662 agacggagtct-cgctctgtc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29216320 20 + 172585720 agacggagtct-cgctctgtc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             28904820 20 - 170955103 agacggagtct-cgctctgtc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    1880211 20 -   2996164 agacggagtct-cgctctgtc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1    1770002 21 -   2157725 AGAGGGAGTCTCCGCTCTGTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17            28223138 18 -  71996105 AGACGGAGTCT-CG--CTGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1    1886928 20 +   2316924 agacggagtct-cgctctgtc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1    1765604 20 -   3067355 agacggagtct-cgctctgtc
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348           215638 61183 +    375362 T
e otoGar3.GL873742          1485322 724 -   2232465 I
e aotNan1.NW_018494050v1      98156 3087 -    285216 I
e cebCap1.NW_016108108v1     160107 4380 -    373274 I
e calJac3.chr4               298011 62542 + 171630274 T

a score=1505712.000000
s hg38.chr6_GL000254v2_alt     59773 215 +   4827813 gcATC-CTCATGATTATTAGGACTTGGATGGACGGGATGGTACAGTGAGTCTAAGCGCCACATCCCTCCGTCGCTTCCTCTGGATATGAGGGAAGAAAGGTACTTTTTTT-GTCCTTAGGGAGGAAGACTCGA--CCAGGAAGGGGACCTGGTTCGTTT---------------CGGCTT---CAAGAGCGCCT--CTCCGCTATTTCCGTCGCTCAG-CAGACCGGCTGAACTCTTTGG
s panTro5.chr6              29030616 215 + 175400573 gcATC-CTCATGATTATTAGGACTTGGATGGACGGGATGGTACAGTGAGTCTAAGCGCCACATCCCTCCGTCGCTTCCTCTGGATATGAGGGAAGAGAGGTACTTTTTTT-GTCCTTAGGGAGGAAGACTCGA--CTAGGAAGGGGACCTGGTTTGTTT---------------CGGCTT---CAAGAGCGCCT--CTCCGCTATTTCCGTCGCTCAG-CAGACCGGCTGAACTCTTTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29274768 215 + 173848474 gcATC-CTCACGATTATTAGGACTTGGATGGACGGGATGGTACAGTGAGTCTAAGCGCCACATCCCTCCGTCGCTTCCTCTGGATATGAGGGAAGAGAGGTACTTTTTTT-GTCCTTAGGGAGGAAGACTCGA--CTAGGAAGGGGACCTGGTTTGTTT---------------CGGCTT---CAAGAGCGCCT--CTCCGCTATTTCCGTCGCTCAG-CAGACCGGCTGAACTCTTTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5073496 215 +   6154872 GCATC-CTCATGATTATTAGGACTTGGATGGACGGGATGGTAGAGTGAGTCTAAGCGCCACATCCCCCCGTCGCTTCCTCTGGATATGAGGGAAGAGAGGTACTTTTTTT-GTCCCTAGGGAGGAAGACTCGA--CCAGGAAGGGGACCTGGTTCGTTT---------------CGGCTT---TAAGAGCGCCT--CTCCGCTATTTCCGTCGCTCAG-CAGACCGGCTGAGCTCTTTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74095582 215 + 122973662 gcATC-CTCAAGATTATTAGGACTTGGATGGACGGGATGGTAGAGTGAGTCTAAGCGCCACATCCCTCCTTCGCTTCCTCTGGATATGAGGGAAGAGAGGTACTTTTTTT-GTCCCTAGGGAGGGAGACTCGA--CCAGGAAGGGGACCTGGTTCGTTT---------------CGGCTT---CAAGAGCGCCT--CTCCGCTATTTCCGTCGCTCAA-CAGACCGGCTGAGCTCTTTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29216340 229 + 172585720 gcATC-CTCAAGATTATTAGGACTTGGACGGACGGGATGGTAGAGTGAGTCTAAGGGCTACATTCCTCCGTCGCTTTCTCTGGATATGAGGGAAGAGAGGTACTTTTTTT-GTCTCTAGGGAGGTAGGCTCGA--CGAGGAAGGGGACCTGGTTCGTTTCTGCCAGG-CTGTCACGGCTT---CAAGAGCAACT--CTCCGCTATTTCCGTCGCTCAA-CAGACCGGCTGAGCTCTTTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28904840 229 - 170955103 gcATC-CTCAAGATTATTAGGACTTGGACGGACGGGATGGTAGAGTGAGTCTAAGCGCTACATTCCTCCGTCGCTTTCTCTGGATATGAGGGAAGAGAGGTACTTTTTTT-GTCTCTAGGGAGGTAGGCTCGA--CGAGGAAGGGGACCTGGTTCGTTTCTGCCAGG-CTGTCACGGCTT---CAAGAGCAACT--CTCCGCTATTTCCGTCGCTCAA-CAGACCGGCTGAGCTCTTTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1880231 229 -   2996164 gcATC-CTCAAGATTATTAGGACTTGGACGGACGGGATGGTAGAGTGAGTCTAAGCGCTACATTCCTCCGTCGCTTTCTCTGGATATGAGGGAAGAGAGGTACTTTTTTT-GTCTCTAGGGAGGTAGGCTCGA--CGAGGAAGGGGACCTGGTTCGTTTCTGCCAGG-CTGTCACGGCTT---CAAGAGCAACT--CTCCGCTATTTCCGTCGCTCAA-CAGACCGGCTGAGCTCTTTGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1770023 239 -   2157725 GCATCGCTCAAGATTATTAGGACTTGGACGGACGGGATGGTAAGTTGAGTCTAAGCGCTACATTCCTCCGTCGCTTTCTCTGGATATGAGGGAAGAGAGGTACTTTTTTTGGTCTCTAGGGAGGTAGGCTCGGACCGAGGAGAGGACCCTGGTTCGTTCTGGCCAGGCCTGTCACGGGCTTCCCAAGAGCAACTCGCTCCGCTATTTCCGTCGCTCAA-CAGACCGCTGGAGCTCTTTGG
i cerAty1.NW_012001495v1   C 0 I 14659
s chlSab2.chr17             28223156 229 -  71996105 GCATC-CTCAAGATTATTAGGACTTGGATGGACGGGATGGTAGAGTGAGTCTAAGCGCTACATTCCTCCGTCGCTTTCTCTGGATATGAAGGAAGAGAGGTACTTTTTTT-GTCTCTAGGGAGGTAGGCTCGA--CAAGGAAGGGGACCTGGTTCGTTTCGGCCAGG-CTGTCACGGCTT---CAAGAGCAACT--CTCCGCTATTTCCGTCGCTCAA-CAGACCGGCTGAGCTCTTTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1886948 229 +   2316924 gcATG-CTCAAGATTATTAGGACTTGGACGGACGGGATGGTAGAGTGAGTCTAAGCGCTACATTCCTCCGTCGCTTTCTCTGGATATGAGGGAAGAGAGGTACTTTTTTT-GTCTCTAGGGAGGTAGGCTCGA--CGAGGAAGGGGACCTGGTTCGTTTCTGCCAGG-CTGTCACGGCTT---CAAGAGCAACT--CTCCGCTATTTCCGTCGCTCAA-CAGACCGGCTGAGCTCTTTGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1765624 229 -   3067355 gcATC-CTCAAGATTATTGGGACTTCGATGGACGGGATGGTAGAGTGAGTCTAAGCGCTACATTCCTCCGTCGCTTCCTCTGGATATGAGGGAAGAGAGGTACTTTTTTT-GTCTCTAGGGAGGTAGGCTCGA--CGAGGAAGAGGACCTGGTTCGTTTCGGCCAGG-CTATCACGGCTT---CAAGAGCGACT--CTCCGCTATTTCCGTCCCTCAA-CGGATCGGCTGAGCTCTTTGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339628 207 - 171630274 GCGTC-CTCAAGGTGGTTCGGACTCGGCCGGACGGGATGGCAGCGCGAGTGTGAGCGCCGCGTGTCGCCGTCGCTT-CTCTGGACGGGAGGGAAGAGACGCTCCTTTCT--GTCCCTAGGGAGGCGG-CTCGG--CCCGGAAGGGG-CCTGGTTCGCTTGGCGCCGG-CTGTCAGGGCTT---CGGGACCGCCT-----CGCGCTTTCCGCGGCT----------------GCACTTTGG
i calJac3.chr4             I 8906 C 0
s saiBol1.JH378348            162508 222 -    375362 GCGTC-CTCACGGTGATTCGGCCTCGGCTGCACCGGACCGCGGAGCGAGTCTAAGCGC--CCTGTTTCCGCCGCTT-CTCTGGACAGGAGGGAAGAGAGGCTCCTTTTC--GTCCCTAGGGAGGTAG-CGCGG--CCGGGAAGGGG-CCTGGTTGGTTTCGCGCGGG-CTGTCAGGGCTT---CGAGGCCGCCT---GGCGCTCTTTCCGTGGCTCCA-CACACCGGCTGGGCTCTTTGG
i saiBol1.JH378348         I 3955 C 0
s otoGar3.GL873742           1486046 230 -   2232465 GCATC-CTCATAATCATTAGGATTTGGATGGATCAGGGAGTGGAGTGAGTCTAAGTGCCACGTCTCTCCGTGGTTTCCTCCGGATAGATGGGAGGAGATA-ATTCTTTTT-GCCCCTGGCGAGGTGAGATTGA--CCAGGAAAAGGGTCGGATTACTTTCTCCCCTGGCTGTAGCAGATT---CAAGAGCTCCT--CGCCGCTCTTTCTGTCTCTGGATTAGACAGGCTGAGTACGTTGA
i otoGar3.GL873742         I 724 C 0
e aotNan1.NW_018494050v1       98156 3087 -    285216 I
e cebCap1.NW_016108108v1      160107 4380 -    373274 I

a score=221232.000000
s hg38.chr6_GL000254v2_alt     59988 36 +   4827813 AGGAGAGAGTGATACTGGGTTTTGGTTTGCCCTTCA
s panTro5.chr6              29030831 36 + 175400573 AGTAGAGAGTGATATTGGGTTTTGGTTTGCCCTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29274983 36 + 173848474 AGTAGAGAGTGATATTGGGTTTTGGTTTGCCCTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5073711 36 +   6154872 AGGAGAGAGTGATGTTGGGTTTTGGTTTGCGCTTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74095797 36 + 122973662 AGGAGCGCGTGATGTTGGGTTTTGGTTTGCGCTTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29216569 36 + 172585720 AGGAGCAAGGGATGTTGGATTTTGGTTTGCGCTTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28905069 36 - 170955103 AGGAGCAAGGGATGTTGGATTTTGGTTTGCGCTTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1880460 36 -   2996164 AGGAGCAAGGGATGTTGGATTTTGGTTTGCGCTTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1784921 36 -   2157725 AGGAGCAAGGGATGTTGGATTTTGGTTTGCGCTTCA
i cerAty1.NW_012001495v1   I 14659 C 0
s chlSab2.chr17             28223385 36 -  71996105 AGGAGCAAGGGATGTTGGATTTTGGTTTGCGCTTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1887177 36 +   2316924 AGGAGCAAGGGATGTTGGATTTTGGTTTGCGCTTCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1765853 36 -   3067355 AGGAGGAAGGGATGTTGGATTTTGGTTTGCGCTTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339835 36 - 171630274 GGACGCCCGTGATGTGGGGTTTTTATTTTCGGTCCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            162730 36 -    375362 GGACGCGCGTGATGTTGGGTTTTTATTTTCGGTCCA
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1486276 19 -   2232465 -----------------TGTTTTTGTTTGTGGTTCA
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1       98156 3087 -    285216 I
e cebCap1.NW_016108108v1      160107 4380 -    373274 I

a score=51540.000000
s hg38.chr6_GL000254v2_alt     60024 5 +   4827813 GGAAC
s panTro5.chr6              29030867 5 + 175400573 GGAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29275019 5 + 173848474 GGAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5073747 5 +   6154872 GGAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74095833 5 + 122973662 GGAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29216605 5 + 172585720 GGAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28905105 5 - 170955103 GGAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1880496 5 -   2996164 GGAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1784957 5 -   2157725 GGAAC
i cerAty1.NW_012001495v1   C 0 T 14658
s chlSab2.chr17             28223421 5 -  71996105 GGAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1887213 5 +   2316924 GGAAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1765889 5 -   3067355 GGAAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339871 5 - 171630274 GGAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            162766 5 -    375362 GGAAG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      101243 5 -    285216 GGAAC
i aotNan1.NW_018494050v1   I 3087 C 0
s otoGar3.GL873742           1486295 5 -   2232465 GGAAG
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      160107 4380 -    373274 I

a score=303627.000000
s hg38.chr6_GL000254v2_alt     60029 33 +   4827813 CGCTGATACT-GTAGCTTCTGAGGGAGCT-GCAGG
s panTro5.chr6              29030872 33 + 175400573 CGCTGATACT-GTAGCTTCTGAGGGAGCT-GCAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29275024 33 + 173848474 CGCTGATACT-GTAGCTTCTGAGGGAGCT-GCAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5073752 33 +   6154872 GGCTGATACT-GTAGCTTCTGAGGGAGCT-GCAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74095838 33 + 122973662 CGTTGATACT-GTAGCTTCTGAGGGAGCT-GCAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29216610 33 + 172585720 CGCTGATACT-GTAGCTTCTGAGGGAGCT-GCAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28905110 33 - 170955103 CGCTGATACT-GTAGCTTCTGAGGGAGCT-GCAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1880501 33 -   2996164 CGCTGATACT-GTAGCTTCTGAGGGAGCT-GCAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1770304 34 -   2157725 CCCTGATACT-GTAGCTTCTGAGGGAGCTGGCAGG
i cerAty1.NW_012001495v1   T 14658 C 0
s chlSab2.chr17             28223426 33 -  71996105 CGCTGATACT-GTAGCTTCTGAGGGAGCT-GCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1887218 33 +   2316924 CGTTGATACT-GTAGCTTCTGAGGGAGCT-GCAGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1765894 33 -   3067355 CGCCGATACT-GTAGCTTCTGAGGAAGCT-GCAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339876 33 - 171630274 CGGCGATCCT-GGAGCTTCTGAGGGAGCC-GCTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            162771 33 -    375362 CGCTGATACG-GGAGCTTCTGGGGGAGCC-GCAGG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      101248 33 -    285216 CGCTGATACT-GGAGCTTCTGAGGGAGCC-GCAGG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486300 34 -   2232465 CGCTGGTATTGGTAGCTCCGGAGCTAGCC-ACAGC
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      160107 4380 -    373274 I

a score=1640271.000000
s hg38.chr6_GL000254v2_alt     60062 171 +   4827813 GATTTCCCGATTTCCTG------CGTGC-CTGTGTTAAAAGTTAGAAGCGGGATCTGCTGGCAGCTTCGAAACTGAGCATGACGGTGGAAACATCTAATTT---TATTAGTTTTTGCTTGAAATGCA----AAAGATGAGAAAGAAAGTTTCCGTTTGTTTGCTCCACATATTTC----TCTTAGAATG
s panTro5.chr6              29030905 171 + 175400573 GATTTCCCGATTTCCTG------CGTGC-CTGTGTTACAAGTTAGAAGCGGGATCTGCTGGCAGCTTCGAAACTGAGCATGACGGTGGAAACATCTAATTT---TATTAGTTTTTGCTTGAAATGCA----AAAGATGAGAAAGAAAGTTTCCGTTTGTTTGCTCCACATATTTC----TCTTAGAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29275057 171 + 173848474 GATTTCCCGATTTCCTG------CGTGC-CTGTGTTACAAGTTAGAAGCGGGATCTGCTGGCAGCTTCGAAACTGAGCATGACGGTGGAAACATCTAATTT---TATTAGTTTTTGCTTGAAATGCA----AAAGATGAGAAAGAAAGTTTCCGTTTGTTTGCTCCACATATTTC----TCTTAGAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5073785 170 +   6154872 GATTTCCCGATTTCCTG------CGTGC-CTGTGTTA-AAGTTAGAAGCGGGATCTGCTGGCAGCTTCGAAACTGAGCATGACGGTGGAAACATCTAATTT---TATTAGTTTTTGCTTGAAATGCA----AAAGATGAGAAAGAAAGTTTCCGTTTGTTTGCTCCACATATTTC----TCTTAGAATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74095871 171 + 122973662 GATTTCCCGATTTCCTG------CGTGC-CTGTGTTAAAAGTTAGAACCGGGACCTGCTGGCAGCTTCGAAACTGAGCATGACGGTGGAAACATCTAATTT---TATTAGTTTTTGCTTGAAATGCA----AAAGATGAGAAAGAAAGTTTCCGTTTGTTTGCTCCACATATTTC----TCTTAGAATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29216643 171 + 172585720 GATTTCCCGATTTCCTG------CGTGC-CTGCGTTTAAAGTTAGAAGCGGAATCTACTGGCAGCTTCGAAACTGAGCCTGACGGTGGTAACATCTAATTT---TATTAGTTTTTGCTTGAAATGCA----AAAGATGAAAAAGCAAGTTCCCGTTTGTTTGCTCCACATATTTC----TCTTAGAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28905143 171 - 170955103 GATTTCCCGATTTCCTG------CGTGC-CTGCGTTTAAAGTTAGAAGCGGAATCTACTGGCAGCTTCGAAACTGAGCCTGACGGTGGTAACATCTAATTT---TATTAGTTTTTGCTTGAAATGCA----AAAGATGAAAAAGCAAGTTCCCGTTTGTTTGCTCCACATATTTC----TCTTAGAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1880534 171 -   2996164 GATTTCCCGATTTCCTG------CGTGC-CTGCGTTTAAAGTTAGAAGCGGCATCTACTGGCAGCTTCGAAACTGAGCCTGACGGTGGTAACATCTAACTT---TATTAGTTTTTGCTTGAAATGCA----AAAGATGAAAAAGCAAGTTCCCGTTTGTTTGCTCCACATATTTC----TCTTAGAATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1770338 171 -   2157725 GATTTCCCGAATTCCTG------CGTGC-CTGTGTTTAAAGTTAGAAGCGGAATCTACTGGCAGCTTCGAAACTGAGCCTGACGGTGGTAACATCTAATTT---TATTAGTTTTTGCTTGAAATGCA----AAAGATGAAAAAGCAAGTTCCCGTTTGTTTGCTCCACATATTTC----TCTTAGAATG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28223459 171 -  71996105 GATTTCCCGATTTCCTG------CGTGC-CTGCGTTTAAAGTTAGAAGCGGAATCTACTGGCAGCTTCGAAACTGAGCCTGACGGTGGTAACATCTAATTT---TATTAGTTTTTGCTTGAAATGCA----AAAGATGAAAAAGCAAGTTTCCGTTTGTTTGCTCCACATATTTC----TCTTAGAATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1887251 171 +   2316924 GATTTCCCGATTTCCTG------CGTGC-CTGTGTTTAAAGTTAGAAGCGGAATCTACTGGCAGCTTCGAAACTGAGCCTGACGGTGGTAACATCTAATTT---TATTAGTTTTTGCTTGAAATGCA----AAAGATGAAAAAACAAGTTCCCGTTTGTTTGCTCCACATATTTC----TCTTAGAATG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1765927 171 -   3067355 GATTTCCTTATTTCCTG------CGTGC-CTGTGTTTAAAGTTAGAAGCGGAATCTGCTGGCAGCTTCGAAACTGAGCATGACGGTGGCAACATCTAATTT---TACTAGTTTTTGCTTGAAATGCA----AAAGATGAAAAAGCAAGTTCCCGTTTGTTTGCTCCACATATTTC----TCTTAGAATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339909 177 - 171630274 gatttcccgatttcccgatttcccgCGTGCCGCGTGGAGCGTTAGCCGCGG-ATCTGCCCGCAGCTTCGAGACTGAGCGTGGCCGTGGAAACGCTTCATTG---TATTAGCTTTAGCTCCAAATGCA----AACGGTGGGAATGAAAGTTCCCGTTTGTTTGCTCCACGTATTTC----TCCCAGAATG
i calJac3.chr4             C 0 I 3
s saiBol1.JH378348            162804 169 -    375362 GATTTCCCGATTTCCCG------CGTGT-CCGCGTGGAGAGTTAGCCGCGG-ATCCGCCGGCAGCTTCGAGACTGAGCGCGACCGTGGAAACGTCTAATTG---TATTAGCTTTTGCTTGAAATGCA----AACGGTGAGAATGAACGTTCCCG-TCGCTTGCTCCACGTATGTG----TCCTAGAATG
i saiBol1.JH378348         C 0 I 3
s cebCap1.NW_016108108v1      164487 173 -    373274 GATTTCCCGATTTCCCG------CGTGC-CCGTGTGGAGAGTTAGCAGCGG-ATCTGCCTGCAGCTTCGAGACTGAGCGTGACCGTGGAAACGTCTATTTGTAATATTAGCTTTTGCTTGAGATGCA----AACGATGAGAATGAACCTTCCCGTTTGTTTGCTCCACCTATTTG----TCCTAGAATG
i cebCap1.NW_016108108v1   I 4380 I 254
s aotNan1.NW_018494050v1      101281 170 -    285216 GATTTCCCGATTTCCCG------CGTGC-CCGTGTGGAGACTCAGCCGCGG-ATCTGCCGGCGGCTTCGAGACTGAGCGTGACCGTGGAAACGTCTAATCG---TATTAGCTTTTGCTCGAGATGCA----CACGGTGAGAATGAAAGTTCCCGTTTGTTTGCTCCACATATTTC----TCCTCGAATG
i aotNan1.NW_018494050v1   C 0 I 7
s otoGar3.GL873742           1486334 170 -   2232465 CCGTTCCGGGT---CCG------CGTGC-GGGTGATGAAAGT-GGAAGCCGGATCTACCCGCAGCTTTAAGGTTGAGAACTACGATGGAAA-ATCTAATTT---TACCAGGTTTTGCTTGAAATACAAAACAAAAATGAGAAAGAAAGTTTCTGTTTGTTTGCTCCACATATGTCTAATTCTTAG----
i otoGar3.GL873742         C 0 C 0

a score=26422.000000
s hg38.chr6_GL000254v2_alt     60233 5 +   4827813 AAGCC
s panTro5.chr6              29031076 5 + 175400573 AAGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29275228 5 + 173848474 AAGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5073955 5 +   6154872 AAGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74096042 5 + 122973662 AAGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29216814 5 + 172585720 AAGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28905314 5 - 170955103 AAGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1880705 5 -   2996164 AAGCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1770509 5 -   2157725 AAGCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28223630 5 -  71996105 AAGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1887422 5 +   2316924 AAGCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1766098 5 -   3067355 AAGCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340089 4 - 171630274 GAGA-
i calJac3.chr4             I 3 C 0
s saiBol1.JH378348            162976 4 -    375362 GAGA-
i saiBol1.JH378348         I 3 C 0
s otoGar3.GL873742           1486504 5 -   2232465 AAGCT
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      101451 7 -    285216 I
e cebCap1.NW_016108108v1      164660 254 -    373274 I

a score=39720.000000
s hg38.chr6_GL000254v2_alt     60238 4 +   4827813 GATT
s panTro5.chr6              29031081 4 + 175400573 GATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29275233 4 + 173848474 GATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5073960 4 +   6154872 GATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74096047 4 + 122973662 GATT
i nomLeu3.chr1a            C 0 I 611
s rheMac8.chr4              29216819 4 + 172585720 GATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28905319 4 - 170955103 GATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1880710 4 -   2996164 GATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1770514 4 -   2157725 GATT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28223635 4 -  71996105 GATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1887427 4 +   2316924 GATT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1766103 4 -   3067355 GATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340093 4 - 171630274 GATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            162980 4 -    375362 GATT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      101458 4 -    285216 GATT
i aotNan1.NW_018494050v1   I 7 C 0
s otoGar3.GL873742           1486509 4 -   2232465 TACT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      164660 254 -    373274 I

a score=475952.000000
s hg38.chr6_GL000254v2_alt     60242 53 +   4827813 GAAAGTTAACTTCACCCTGAAGAAACTCCTCCTGGCGTTTGCAACGATCTCCT
s panTro5.chr6              29031085 53 + 175400573 GAAAGTTAACTTCACCCTGAAGAAACTCCTCCTGGCATTTGCAACGATCTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29275237 53 + 173848474 GAAAGTTAACTTCACCCTGAAGAAACTCCTCCTGGCATTTGCAACGATCTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5073964 53 +   6154872 GAAAGTTAACTTCACTCTGAAGAAACTCCTCCTGGCGTTTGCAAATATCTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74096662 53 + 122973662 gaaaGTTAACTTCACCCTGAAGAAACTCCTCCTGGCGTTTGCAACGATCTCCT
i nomLeu3.chr1a            I 611 C 0
s rheMac8.chr4              29216823 53 + 172585720 GAAAGTTAACTTCACCCTGAAGAAACTCCTCCTGGCGTTTGCAACGATCTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28905323 53 - 170955103 GAAAGTTAACTTCACTCTGAAGAAACTCCTCCTGACGTTTGCAACGATCTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1880714 53 -   2996164 GAAAGTTAACTTCACCCTGAAGAAACTCCTCCTGGCGTTTGCAACGATCTCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1770518 53 -   2157725 GAAAGTTAACTTCACCCTGAAGAAACTCCTCCTGGCGTTTGCAACGATCTCCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28223639 53 -  71996105 GAAAGTTAACTTCACCCTGAAGAAACTCCTCCTGGCGTTTGCAACGATCTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1887431 53 +   2316924 GAAAGTTAACTTCACCCTGAAGAAACTCCTCCTGGCGTTTGCAACGATCTCCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1766107 53 -   3067355 GAAAGTTAACTTCACCCTGAAGAAACTCCTTCTGGCGTTTGCAACGATCTCCT
i colAng1.NW_012115566v1   C 0 I 15660
s calJac3.chr4             171340097 49 - 171630274 AAAAGCCGGCGCCG-CGCGAAGAAA---CTCCTGCCGTTTGCAACGAGCTCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            162984 50 -    375362 AAAAGTCAGCGTCACCGTGAAGAAA---CTCCTGGCGTTTGCAACGAGCTCCT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      101462 53 -    285216 AAAAGGCAGCGTCGCCCTGAAGAAACTCCTCCTGGCGTTTGCAACGAGCCCCT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486513 53 -   2232465 GGAACCCAACTTTTTCCTGAAGAAACTCTTCCTGGCATTTGCAACCACCTTCT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      164660 254 -    373274 I

a score=1549928.000000
s hg38.chr6_GL000254v2_alt     60295 218 +   4827813 GTATGTCTCACGTCCAG--CTTGACTCAAAAGGACTCTAAAGAGCTGGAGAGCGGCTGCGGAAAGGCGGAGT---CACGGTACAATCGGTGTTAACTACTTGTGCAACCACCGCCTCCTTAG---TCCTATTAGAGGCGCAGAGGCAGTATAGCTGAATCCCTC--ACAAGTCGAGTGGGTTGACCTCAG-ATTGA-CTTTAGCGATGGCTTGTGACCACCTGATAGATA
s panTro5.chr6              29031138 218 + 175400573 GTATGTCTCACGTCTAG--CTTGACTCAAAAGGACTCTAAAGAGCTGGAGAGCGGCTGCGGAAAGGCGGAGT---CACGGTACAATCGGTGCTAACTACTTGTGCAGCCACCGCCTCCTTAG---TCCTATTACAGGCGCAGAGGCAGTATAGCTGAATCCCTC--ACAAGTCGAGTGGGTTGACCTCAG-ATTGA-CTTTAGCGATGGCTTGTGACCACCTGATAGATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29275290 218 + 173848474 GTATGTCTCACGTCTAG--CTTGACTCAAAAGGACTCTAAAGAGCTGGAGAGCGGCTGCGGAAAGGCGGAGT---CACGGTACAATCGGTGCTAACTACTTGTGCAGCCACCGCCTCCTTAG---TCCTATTACAGGCGCAGAGGCAGTATAGCTGAATCCCTC--ACAAGTCGAGTGGGTTGACCTCAG-ATTGA-CTTTAGCGATGGCTTGTGACCACCTGATAGATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5074017 218 +   6154872 GTATGTCTCACGTCCAG--CTTGACTCAAAAGGACTCTAAAGAGCTGCAGAGCGGCTGGGGAAAGACGGAGT---CACGGTACAATCGGTGTTAACTACTTGTGCAGCCACCGCCTCCTTAG---TCCTATTACAGGCGCAGAGGCAGTATAGCTGAATCCCTC--ACAAGTCGAGTGGGTTGACCTCAG-ATTGA-CTTTAGCGATGGCTTGTGACCACCTGATAGATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74096715 218 + 122973662 TTATGTCTCACGTCCAG--CTTGACTCAAAAGGACTCTAAAGAGCTGGAAAGCGTCTGCGGAAAGGCGGAGT---CACGGTACAATCGGTGTTAACTACATGTGCAGCCACCGCCTCCTTAG---TCCTATTACAGGTACAGAGGCAGTATAGCTGAATCCCTC--ACAAGTCGAGTGGGTTGAACTCAG-ATTGA-CTTTAGCGATGGCTTGTGACCACCTGATAGATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29216876 208 + 172585720 TTATGCCTCACGTCCAG--CCTGACTCAAAAGGACTCTAAAGAGCTGGAGAGCGGCTGCGGAAAGGCGGAGT---AGCGGTACAATTGGTGTTAACTACGTGTGCAGTCACCGCCTCTTTAG---TCCTGTTACAGGTGCAGAGGCAGTATAGATGAATCCCTC--ACAAGTCGAGTGGGTTGACCTCAG-ATTGA-CTTTAGCGATGGCT----------TGATAGATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28905376 208 - 170955103 TTATGCCTCACGTCCAG--CCTGATTCAAAAGGACTCTAAAGAGCTGGAGAGCGGCTGCGGAAAGGCGGAGT---AGCGGTACAATTGGTGTTAACTACGTGTGCAGTCACCGCCTCTTTAG---TCCTATTACAGGTGCAGAGGCAGTATAGATGAATCCCTC--ACAAGTCGAGTGGGTTGACCTCAG-ATTGA-CTTTAGCGATGGCT----------TGATAGATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1880767 208 -   2996164 TTATGCCTCACGTCCAG--CCTGATTCAAAAGGACTCTAAAGAGCTGGAGAGCGGCTGCGGAAAGGCGGAGT---AGCGGTACAATTGGTGTTAACTACGTGTGCAGTCACCGCCTCTTTAG---TCCTATTACAGGTGCAGAGGCAGTATAGATGAATCCCTC--ACAAGTCGAGTGGGTTGACCTCAG-ATTGA-CTTTAGCGATGGCT----------TGATAGATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1770571 214 -   2157725 TTATGCCTCACGTCCAG--CCTGACTCAAAAGGACTCTAAAGAGCTGGAGAGTGGCTGCGGAAAGGCGGAGT---CACGGTACAATTGGTGTTAACTACGTGTGCAGTCACAGCCTCTTTAGGTCCCCTATTACAGGTGCAGAGGCAGTATAGATGAATCCCTCCAACAAGTCGAGTGGGTTGACTCCAG-ATTGACCTTTAGCGATGGCT----------TGATAGATG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28223692 208 -  71996105 TTATGCCTCACGTCCAG--CCTGACTCAAAAGGACTCTAAAGAGCTGGAGAGCGGCTGCGGAAAGGCGGAGT---CGCGGTACAATTGGTGTTAACTACGTGTGCAGTCACCGCCTCTTTAG---TCCTATTACAGGTGCAGAGGCAGTATAGATGAATCCCTC--ACAAGTCGAGTGGGTTGACCTCAG-ATTGA-CTTTAGCGATGGCT----------TGATAGATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1887484 208 +   2316924 TTATGCCTCACGTCCAG--CCTGACTCAAAAGGACTCTAAAGAGATGGAGAGCGGCTGCGGAAAGGCGGAGT---CACGGTACAATTGGTGTTAACTACGTGTGCAGTCACAGCCTCTTTAG---TCCTATTACAGGTGCAGAGGCAGTATAGATGAATCCCTC--ACAAGTCGAGTGGGTTGACCTCAG-ATTGA-CTTTAGCGATGGCT----------TGATAGATG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1781820 217 -   3067355 TTACTCCTCACGTCCAGCTCTTGGCTC---AGGACTCTGCAGAGCTGCACAGCGGCTGCAGCAAGGCGAAGT---CGCGGTACAACCGGTGTTAACTAAGTGTGCAGCCACCGTCTTCTTAG---TCCTATTACAGGTGCAGAGGCAATATAAGTGAACCCCTC--ACAAGTCGAGTGGGCTGACCTCAC-ATTGA-GTTTAGCGATGACTTGTGACCCCCTGGTAGATG
i colAng1.NW_012115566v1   I 15660 C 0
s calJac3.chr4             171340146 194 - 171630274 TTGCTGCTCGCGTCCAGCGCTCGGCTCCAGAGGCCTCTGCAG---------------------GGGCGGAGT-----CGGGGCAGTCGGTGTCAAGTGCGTGTGCAGCCAGCGTCTCCGCGG---TCCTAGGACAGGTGCAGAGGCAA-ATAGGGGACCCCGTC--CCTAGTCGGGTGGGTTGAGCTCAG-ATTGA-GTTTAGCGACGCC--GTTACCCCCTGGCAGGCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            163034 215 -    375362 TTACTGCTCACGTCGCGCGCTCGGCTC--GAGGCCTCTGCAGA--CTGACGGCGGCTGCGGAAAGGCGGCGT---CGCGGGGCAGTCCGTGTAAACTGCGTGTGCAGCCGGCGTCTCCTCAG---GCCTGGGACAGGTGCAGAGGCAA-ACAGGGGAACCCCTC--AGCAGTCGGGTGGGTTGACCTCAG-ATTGG-GTTCAGCGACGCCCTGGTAGCGCCTGGCAGGCG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      101515 208 -    285216 TTACTGCTCACGTGCAGCGCTCGGCTC----------TGCAGAGGCGGATGGCGGCTGCGGAAAGGCGGAGG---CGTGGGGCAATCCGTGCAAACTGCGTGTGCGGCCAGCGGCTCCTCAG---TCCTAGGACAGGTGCAGAGGGAA-ATAGGGGAACCCCTC--CCTAGTC-GGTGGGTTGACCCCAG-ACTGA-GTTTAGCGACGCCCTGTGACCACCTGGCAGGCG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486566 216 -   2232465 TTACTCCTCCCATCCTGTTCTTAACTCAAAAA---TTTGAAG--CCACACTGTGGCTG-GGAAAGGCAGAGTCACCGCAGCACATTCTGTGTTA--CACCTGTGTGGCCCTCTTATTCTAAG---TCCTATTACAGGCTCAGAGGCAAGATAGTTGAGTCCCTC--ACAAGTCGACTGAGTTGACCTCAACATTGA-CTTTAAGCGTCCCTTGTGACCACCTGGTGGACA
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      164660 254 -    373274 I

a score=271266.000000
s hg38.chr6_GL000254v2_alt     60513 29 +   4827813 GTGG-CC-GTTACAGCGTTTAGAAAGTGAGT
s panTro5.chr6              29031356 29 + 175400573 GTGG-CC-GTTACAGCGTTTAGAAAGTGAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29275508 29 + 173848474 GTGG-CC-GTTACAGCGTTTAGAAAGTGAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5074235 29 +   6154872 GTGG-CC-GTTACAGCGTTTAGAAAGTGAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74096933 29 + 122973662 GTGG-CC-ATTACAGCGTTTAGAAAGTGAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29217084 29 + 172585720 GTGG-CC-GTCACAGCGTTTAGAAAGTGAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28905584 29 - 170955103 GTGG-CC-GTCACAGCGTTTAGAAAGTGAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1880975 29 -   2996164 GTGG-CC-GTCACAGCGTTTAGAAAGTGAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1770785 29 -   2157725 AGTG-CC-GTCACAGCGTTTAGAAAGTGAGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28223900 29 -  71996105 GTGG-CC-GTCACAGCGTTTGGAAAGTGAGT
i chlSab2.chr17            C 0 I 310
s manLeu1.NW_012104165v1     1887692 29 +   2316924 GTGG-CC-GTCACAGCGTTTAGAAAGTGAGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782037 30 -   3067355 GTGGACC-GTTACAGCATTTAGAAAGTGAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340340 29 - 171630274 GTGG-AA-GTTACAGCGTTTAGAACGTGAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            163249 29 -    375362 GTGG-AC-GTTTCCGCGTTTAGAAAGTGAGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      164914 29 -    373274 GTGG-AC-GTTACCGCGTTTAGAAAGTGAGT
i cebCap1.NW_016108108v1   I 254 C 0
s aotNan1.NW_018494050v1      101723 29 -    285216 GTGG-AC-GTTACAGCGTTTAGAAAGTGAGC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486782 24 -   2232465 GTGG-ACAGTTACAACTTTTTAAGA------
i otoGar3.GL873742         C 0 C 0

a score=7847.000000
s hg38.chr6_GL000254v2_alt     60542 1 +   4827813 A
s panTro5.chr6              29031385 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29275537 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5074264 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74096962 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29217113 1 + 172585720 A
i rheMac8.chr4             C 0 I 453
s macFas5.chr4              28905613 1 - 170955103 A
i macFas5.chr4             C 0 I 554
s macNem1.NW_012011356v1     1881004 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1770814 1 -   2157725 A
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28224239 1 -  71996105 a
i chlSab2.chr17            I 310 C 0
s manLeu1.NW_012104165v1     1887721 1 +   2316924 A
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782067 1 -   3067355 A
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340369 1 - 171630274 G
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1      101752 1 -    285216 A
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486806 1 -   2232465 A
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            163278 0 -    375362 C
e cebCap1.NW_016108108v1      164943 0 -    373274 C

a score=82906.000000
s hg38.chr6_GL000254v2_alt     60543 8 +   4827813 AAAGAAAG
s panTro5.chr6              29031386 8 + 175400573 AAAGAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29275538 8 + 173848474 AAAGAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5074265 8 +   6154872 AAAGAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74096963 8 + 122973662 GAAGAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29217567 8 + 172585720 aaagaaaG
i rheMac8.chr4             I 453 C 0
s macFas5.chr4              28906168 8 - 170955103 aaaGAAAG
i macFas5.chr4             I 554 C 0
s macNem1.NW_012011356v1     1881005 8 -   2996164 AAAGAAAG
i macNem1.NW_012011356v1   C 0 I 345
s cerAty1.NW_012001495v1     1770815 8 -   2157725 AAAGAAAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28224240 8 -  71996105 aaagaaaG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1887722 8 +   2316924 AAAGAAAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782068 8 -   3067355 AAAGAAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340370 8 - 171630274 AAAGAGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            163278 7 -    375362 -AAAAGAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      164943 7 -    373274 -AAAAGGG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      101753 8 -    285216 AAAGAGAG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486807 8 -   2232465 AAAGAGAG
i otoGar3.GL873742         C 0 C 0

a score=13600.000000
s hg38.chr6_GL000254v2_alt     60551 1 +   4827813 G
s panTro5.chr6              29031394 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29275546 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5074273 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74096971 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29217575 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28906176 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1881358 1 -   2996164 G
i macNem1.NW_012011356v1   I 345 C 0
s cerAty1.NW_012001495v1     1770823 1 -   2157725 G
i cerAty1.NW_012001495v1   C 0 I 313
s chlSab2.chr17             28224248 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1887730 1 +   2316924 G
i manLeu1.NW_012104165v1   C 0 I 308
s colAng1.NW_012115566v1     1782076 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340378 1 - 171630274 G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            163285 1 -    375362 G
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      164950 1 -    373274 G
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      101761 1 -    285216 G
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486815 1 -   2232465 G
i otoGar3.GL873742         C 0 C 0

a score=799882.000000
s hg38.chr6_GL000254v2_alt     60552  91 +   4827813 ATGCA-TAGGGAAGCCCACAAGTTTGCTTGGCTTCTGCAGATGGAGAGAG--------GTCGCTTTTCTGCCTTCTGGATG-TTTAGTAACTTA-TTTTTTA
s panTro5.chr6              29031395  91 + 175400573 ATGCA-TAGGGAAGCCCACAAGTTTGCTTGGCTTCTGCAGATGGAGAGAG--------GTCGCTTTTCTGCCTTCTGGGTG-TTTAGTAACTTA-TTTTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29275547  91 + 173848474 ATGCA-TAGGGAAGCCCACAAGTTTGCTTGGCTTCTGCAGATGGAGAGAG--------GTCGCTTTTCTGCCTTCTGGGTG-TTTAGTAACTTA-TTTTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5074274  92 +   6154872 ATGCA-TAGGGAAGCCCACAAGTTTGCTTGGCTTCTGCAGATGGAGAGAG--------GTCGCTTTTCTGCCTTCTGGGTGTTTTAGTAACTTA-TTTTTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74096972  89 + 122973662 ATGCA-CACGGAAGCCCACAAGTTCGCTTGGCTTCTGGCGATGGAGAGAG--------GCCGCTTTTCTGCCTTCTTGGTG-TTTAGTAACTTA-TTTTT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29217576 100 + 172585720 ATGCA-TACAGAAGCCCACATAATTGCTTGGCTTCTACAGATGGAGAGAGAGAGAAAGGTCGCTTTTCTCCCTTCTGGGTG-TTTAGTAACTTATTTTTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28906177 100 - 170955103 ATGCA-TACAGAAGCCCACATAATTGCTTGGCTTCTACAGATGGAGAGAGAGAGAAAGGTCGCTTTTCTCCCTTCTGGGTG-TTTAGTAACTTATTTTTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1881359  95 -   2996164 ATGCA-TACAGAAGCCCACATAATTGCTTGGCTTCTACAGATGGAGAGAGAGAGAAA-GTCGCTTTTCCTTCT----GGTG-TTTAGTAACTTATTTTTTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1771137  99 -   2157725 aTGCA-TACAGAAGCCCACACGCTTGCTTGGCTTCTGCAGATGGAGAGAGAGAGAAAGGTCGCTTTTCTGCCTTCTGGGTG-TTTAGTAACTTA-TTTTTTA
i cerAty1.NW_012001495v1   I 313 C 0
s chlSab2.chr17             28224249  99 -  71996105 ATGCA-TACAGAAGCCCACATAATTGCTTGGCTTCTGCAGATGGAGAGAGAGAGAAAAGTCGCTTTTCTCCCTTCTGGGTG-TTTAGTAACTTA-TTTTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1888039  99 +   2316924 aTGCA-TACAGAAGCCCACACGCTTGCTTGGCTTCTGCAGATGGAGAGAGAGAGAAAGGTCGCTTTTCTGCCTTCTGGGTG-TTTAGTAACTTA-TTTTTTA
i manLeu1.NW_012104165v1   I 308 C 0
s colAng1.NW_012115566v1     1782077  90 -   3067355 ATGCA-TACAGAAGCCAACAGGCTTGCTTGGCTCCTGCAGATGGAGAGAG--------GTCGCTTTTCTGCCTTCTGGGTG-TTTAGTAACTTA-TTTTTT-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340379  90 - 171630274 ATGC--TACGGAAGCCCACCCGCTTGCTTGGCTTCTGCAGATGGAGAGAG--------GTCGCTTTTCTGCCTTCTGGGCG-TTTACTAACTTA-TTTTTTA
i calJac3.chr4             C 0 I 33
s saiBol1.JH378348            163286  91 -    375362 ATGCG-TACGGAAGCCCACCCGCGTGCTTGGCTTCTGCAGATGGAGAGAG--------GTCGCTTTTCTGCCTTCTGGGTG-TTTACTAACGTA-TTTTTTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      164951  91 -    373274 ATGCG-GACGGAAGCCCACCCGCTTGCTTGGCTTCTGCAGATGGACAGAG--------GTCGCTTTTCTGCCTTCTGGGTG-CTTACTAACTTA-TTTTTAA
i cebCap1.NW_016108108v1   C 0 I 3
s aotNan1.NW_018494050v1      101762  90 -    285216 ACGCC-TTCGGAAGCCCACCCGCTTGCTTGGCTTCTGCATATGGAGAGAG--------GTCGCTTTTCTGCCTTCTGGGTG-TTTACTAACTTA-TTTTTT-
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486816  78 -   2232465 ATACATTATGGAAGCCCTTTGGGTTGCTTAGCTTCTACAAATGAAGAAAAAG------ATGGCTTTTCTGTTTTC----TG-TCCTCCA-------------
i otoGar3.GL873742         C 0 C 0

a score=25477.000000
s hg38.chr6_GL000254v2_alt     60643 5 +   4827813 TTTCC--
s panTro5.chr6              29031486 5 + 175400573 TTTCC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29275638 5 + 173848474 TTTCC--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5074366 5 +   6154872 TTTCC--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74097061 5 + 122973662 TTTCC--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29217676 5 + 172585720 TTTCC--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28906277 5 - 170955103 TTTCC--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1881454 5 -   2996164 TTTCC--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1771236 5 -   2157725 TTTCC--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28224348 5 -  71996105 TTTCC--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1888138 5 +   2316924 TTTCC--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782167 5 -   3067355 CCCCC--
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            163377 3 -    375362 --TTT--
i saiBol1.JH378348         C 0 I 3
s cebCap1.NW_016108108v1      165045 3 -    373274 --TCT--
i cebCap1.NW_016108108v1   I 3 C 0
s aotNan1.NW_018494050v1      101852 3 -    285216 --TCC--
i aotNan1.NW_018494050v1   C 0 I 1
s otoGar3.GL873742           1486894 7 -   2232465 CCCCCGC
i otoGar3.GL873742         C 0 C 0
e calJac3.chr4             171340469 33 - 171630274 I

a score=1423595.000000
s hg38.chr6_GL000254v2_alt     60648 160 +   4827813 TTTGTTGGCATGAAATAGAGCTGAAAATAAAAGCAGAT---TTTCTTTTAACA--AGATAGTATTAAGATGC------------------TTGCAGAG-TATTTCTCTGTGGATTTCTGCTTGGCACTGTGATACCA---------------C---------------AAAGAGCTCTAATCTGGAGGTATGGGTTGTTCCCTAGCTTAGAAGG
s panTro5.chr6              29031491 160 + 175400573 TTTGTTGGCATGAAATAGAGCTGAAAATAAAAGCAGAT---TTTCTTTTAACA--AGATAGTATTAAGATGC------------------TTGCAGAA-TATTTCCCTGTGGATTTCTGCTTGGCACGGTGATACCA---------------C---------------AAAGAGCTCTAATCTGGAGGTATGGGTTGTTCCCTAGCTTAGAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29275643 160 + 173848474 TTTGTTGGCATGAAATAGAGCTGAAAATAAAAGCAGAT---TTTCTTTTAACA--AGATAGTATTAAGATGC------------------TTGCAGAG-TATTTCCCTGTGGATTTCTGCTTGGCACGGTGATACCA---------------C---------------AAAGAGCTCTAATCTGGAGGTATGGGTTGTTCCCTAGCTTAGAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5074371 159 +   6154872 TTTGTTGGCATGAAATAGAGCTGAAAATAAAAGCAGAT---TTTCTTTTAACA--AGATAGTATTAAGATGC------------------TTGGAGAG-TATTTC-CTGTGGATTTCTGCTTGGCACGGTGATACCA---------------C---------------AAAGAGCTCTAATCTGGAGGTATGGGTTGTTCTCTAGCTTAGAAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74097066 161 + 122973662 TTTGTTGGCATGAAATAAAGCTGAAAATAAAAGCAGAT---TTTCTTTTAACA--AGTTAGTATTAACATGC------------------TTGCAGAGTTATTTCCCTGTGGATTTCTGCTTAGCACGGTGATACCA---------------C---------------AAAGAGCTCTAATCTGGAGGTATGGGTTGTTCCCTAGCTTAGAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29217681 160 + 172585720 TTTGTTGTCATGAAATAGAGCTGAAAATAAAAGCAGAT---TTTCTTTTAACA--AGACAGTATTAACATGC------------------TTGCAGAA-AATTTCCCTGAGGATTTCTACTTAGCACGGTGATACCA---------------C---------------AAAGAGCTCTAATCTGGAGGTATGGGTTGTTCCCTAGCTTAGAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28906282 160 - 170955103 TTTGTTGTCATGAAATAGAGCTGAAAATAAAAGCAGAT---TTTCTTTTAACA--AGACAGTATTAACATGC------------------TTGCAGAA-AATTTCCCTGAGGATTTCTACTTAGCACGGTGATACCA---------------C---------------AAAGAGCTCTAATCTGGAGGTATGGGTTGTTCCCTAGCTTAGAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1881459 152 -   2996164 TTTGTTGTCATGAAATAGAGCTGAAAAT-AAAGCAGAT---TTT-TTTTAACA--AGACAGTA-TAACATGC------------------TTGCAGAA-AATTT-CCTGAGGATTTCTACTTAGCACGGTGATACCA---------------C----------------AAGAGCTCTAATCTGGAGGTATGGGGTGTTCCCTAGC-TAGAG--
i macNem1.NW_012011356v1   C 0 I 1260
s cerAty1.NW_012001495v1     1771241 160 -   2157725 TTCGTTGGCATGAAATAGAGCTGAAAATAAAAGCAGAT---TTTCTTTTAACA--AGACAGTATTAACATGC------------------TTGCAGAA-AATTTCCCTGAGGATTTCTACTTAGCACGGTGATACCA---------------C---------------AAAGAGCTCTAATCTGGAGGTATGAGTTGTTCCCTAGCTTAGAAGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28224353 160 -  71996105 TTTGTTGGCATGAAATAGAGCTGAAAATAAAAGCAGAT---TTTCTTTTAACA--AGACAGTATTAACATGC------------------TTGCAGAA-AATTTCCCTGAGGATTTCTACTTAGCCCGGTGATACCA---------------C---------------AAAGAGCTCTAATCTGGAGGTATGGGTTGTTCCCTAGCTTAGAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1888143 160 +   2316924 TTCGTTGGCATGAAATAGAGCTGAAAATAAAAGCAGAT---TTTCTTTTAACA--AGACAGTATTAACATGC------------------TTGCAGAA-AATTTCCCTGAGGATTTCTACTTAGCACGGTGATACCA---------------C---------------AAAGAGCTCTAATCTGGAGGTATGGGTTGTTCCCTAGCTTAGAAGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782172 174 -   3067355 TTTGTTGGCATGAAATAAAGCTGAAAAT-AAAACAGAT---TTTCTTTTAACA--AGTTAGTATTAACATGC------------------TTGCAGAG-TATTTCCCTGTGGACTTCTGCTTAGTACTGTAATGCCA---------------GAATCCGAAACTCTAAAAAGAGCTCTAATCTGGAGATATGGGTTGTTCCCTAGCTTAGAAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340502 175 - 171630274 TTTGTTTAAATAAAATAGCTCTGAAAATAGAAGGAGAT---TTTATTTTAACA--AGATAGTATTAGGATGCG-----------------TTGCAGAG-TATCCCCGGGAGGATTTCTGCTTAGCGCTGTGATACCAGGAT-GAAAACTGTGC---------------AAAGAGCTCTAATCTGGGGGTGCAGGTTGTTCACTAGCCTAGAAGC
i calJac3.chr4             I 33 C 0
s saiBol1.JH378348            163383 162 -    375362 TTTGTTGGCATGAAATAGAGCTGAAAATAAAAGCAGATTCATTTCTTTTAACA--AGATGGTACTGAGATGC------------------TTGCAGAG-TATTTCCCTGTGGATTTCTGCTTAGCGCTGTGATACCA---------------C---------------AAACAGCTCTAATCTGGAGGTGTGGGTTATCCG-TAGCTTTAAAGG
i saiBol1.JH378348         I 3 C 0
s cebCap1.NW_016108108v1      165048 172 -    373274 TTTGTTTAAATGAAATAGCGCTGAAAAT---AGGAGAT---TTTATTTTAACA--AGATAGTATTAAGATGGG-----------------TTGCAGAG-TATCCCCGGGAGGATATCTGCTTAGCACTGTGATCCCAGAAT-GAAAACTGTGC---------------AAAGAGCTCTAATCTGGAGGTGTAGGTTGTTCACTGGCCTAGAAGC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      101856 180 -    285216 TTTGTTGGCATGAAATAGAGCTGAAAATAAAAGCAGATTTATTTTTTTTAACA--AGATGATACTAAGATGCTTGTATCATCTAAGATGCTTGCAGAG-TATTTCCCTGTGGATTTCTGCTTAGCGCTGTGATACCA---------------C---------------AAAGAGCTCTAATCTGGAGGTGTGGGTTATCCG-TAGCTTTAAAGG
i aotNan1.NW_018494050v1   I 1 C 0
s otoGar3.GL873742           1486901 173 -   2232465 TTTGGTGGAAGGAAATAGGACTGGAAATAAAAAGGGGG---GTTGTTTAAAAAACAAAAGATATTAAGATGC------------------TTGCGGAG-TATCCTATTGTGGAGTTCTCCTTA-CACTGTGATAGCAGAATCTCAAACTG--C---------------AAGCAGTTCTGATCTGGAGACA-GGGGCGTTCAATAGTTCAGAAGA
i otoGar3.GL873742         C 0 C 0

a score=1761224.000000
s hg38.chr6_GL000254v2_alt     60808 181 +   4827813 AGGTCAATCCTGGAGAGTAAGTACTGTGAGGTACAAAAGGATCCTTTGGGATTGGAAAAATAAACGTTCATTACT----TTTATTTATGTAAAAC--AGCAAAATGAGCTTTCTCCTATACTGATCTTGGTCCCTGGAGTTCAGAGTGTTTGCATCTCAGACCAGAAGCTTCCTCAGAGGACCCAGA
s panTro5.chr6              29031651 181 + 175400573 AGGTCAATCCTGGAGAGTAAGTACTGTGAGGTACAAAAGGATCCTTTGGGATTGGAAAAATAAACGTTCATTACT----TTTATTTATGTAAAAC--AACAAAATGAGCTTTCTCCTATACTGATCTTGGTCCCTGGAGTTCAGAGTGTTTGCATCTCAGACCAGAAGCTTCCTCAGAGGACCCAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29275803 181 + 173848474 AGGTCAATCCTGGAGAGTAAGTACTGTGAGGTACAAAAGGATCCTTTGGGATTGGAAAAATAAACGTTCATTACT----TTTATTTATGTAAAAC--AACAAAATGAGCTTTCTCCTATACTGATCTTGGTCCCTGGAGTTCAGAGTGTTTGCATCTCAGACCAGAAGCTTCCTCAGAGGACCCAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5074530 181 +   6154872 AGGTCAATCCTGGAGAGTAAGTACTGTGAGGTACAAAAGGATCCTTTGGGATTGGAAAAATAAACGTTCATTACT----TTTATTTATGTAAAAC--AACAAAATGAGCTTTCTCCTATACTGATCTTGGTCCCTGGAGTCCAGAGTGTTTGCATCTCAGACCAGAAGCTTCCTCAGAGGACCCAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74097227 181 + 122973662 AGGTCAATCCTGGAGAGTAAGTACTGTGAGGTACAAAAGGATCCTTTGGGATTGGAAGAATAAATGTTCATTACT----TCTATTTATGTAAAAC--AACAAAATGAGCTTTCTCCTATACTGATCTTGGTCCCTGGAGTTCAGAGTGTTTGCATCTCGGCCCAGAAGCTTCCTCAGAGGACCCAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29217841 179 + 172585720 AGGTCAATCCTGGAGAGTAAGTACAGTGAGGTACAAAGGGATCCTTTGGGATTAGAAGAATAAACGTTCATTACT----TTTATTTATGTAAAAC--AACAAAATGAGCTTTCTCCTATCCTGATCTTGGTTCCTGGAGTTC--AGTGTCAGCATCTCAGACCAGAAGCTTCCTCAGAGGACCCAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28906442 179 - 170955103 AGGTCAATCCTGGAGAGTAAGTACAGTGAGGTACAAAGGGATCCTTTGGGATTAGAAGAATAAACGTTCATTACT----TTTATTTATGTAAAAC--AACAAAATGAGCTTTCTCCTATCCTGATCTTGGTTCCTGGAGTTC--AGTGTCAGCATCTCAGACCAGAAGCTTCCTCAGAGGACCCAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1882871 179 -   2996164 AGGTCAATCCTGGAGAGTAAGTACAGTGAGGTACAAAGGGATCCTTTGGGATTAGAAGAATAAACGTTCATTACT----TTTATTTATGTAAAAC--AACAAAATGAGCTTTCTCCTATCCTGATCTTGGTTCCTGGAGTTC--AGTGTCAGCATCTCAGACCAGAAGCTTCCTCAGAGGACCCAGA
i macNem1.NW_012011356v1   I 1260 C 0
s cerAty1.NW_012001495v1     1771401 179 -   2157725 AGGTCAATCCTGGAGAGTAAGTACAGTGAGGTACAAAAGGATCCTTTGGGATTAGAAGAATAAACGTTCATTACT----TTTATTTATGTAAAAC--AACAAAATGAGCTTTCTCCTATCCTGATCTTGGTTCCTGGAGTTC--AGTGTTAGCATCTCAGACCAGAAGCTTCCTCAGAGGACCCAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28224513 179 -  71996105 AGGTCAATCCTGGAGAGTAAGTACAGTGAGGTACAAAAGGATCCTTTGGGATTAGAAGAATAAATGTTCATTACT----TTTATTTATGTAAAAC--AACAAAATGAGCTTTCTCCTATCCTGATCTTGGTTCCTGGAGTTC--AGTGTTAGCATCTCAGACCAGAAGCTTCCTCAGAGGACCCAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1888303 179 +   2316924 AGGTCAATCCTGGAGAGTAAGTACAGTGAGGTACAAAAGGATCCTTTGGGATTAGAAGAATAAACATTCATTACT----TTTATTTATGTAAAAC--AACAAAATGAGCTTTCTCCTATCCTGATCTTGGTTCCTGGAGTTC--AGTGTTAGCATCTCAGACCAGAAGCTTCCTCAGAGGACCCAGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782346 181 -   3067355 AGATTATTTCCGGAGAGTAAGTACAATGAAGTAGAAAAGGATCCGTTGGGCTTGGAAGAATAAACGTTCATTACT----TTTATGTATGAAAAAC--AACAAAATGAGCTTTCTCCTATACTGATCTTGGTTCCTGGAGTTCAGAGTGTTTGCATCTCAGACCAGAAACTTCCTCAGAGGACCCAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340677 183 - 171630274 AGGTTATTCCTGGAGAATAAGTGCGGC-AGGTAGAAAAGGGTCCATCGGGATTGGGAGAATAAAAGTTCATTCGTTGTATTTATTTATGGAAAAC--AAAGAAATGAGCTTTCCCCTATGCTGATCTTGGTCCCGGGAGTCCA-AGTGCTAGCACCTCGGGACAGAAAGTTCCTTAGAGAACTCAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            163545 179 -    375362 AGGATATTCCTGGAGAGTAAGTACAGTGAGGTAGAAATGGATCCATTGGGATTGGGAGAATATAGGTTCATTACT----TTTATTTATGAGAAAC--AACAAAATGAGCTTTCTCCTATACTGACCTTGGTCCCTGGAGTTCAGAGTGT--GCTTCTCAGACCAGAAGATTCCTCAGAGGACCCAGA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      165220 184 -    373274 AGGTTATTCCTGGAGAATACGTGCAGC-AGGTAGAAAAGGATCCTTTGGGATTGGGAGAATAAAAGTTTATTCATTGTATTTATTTACGGAAAAC--AAAGAAATGAGCTTTCCCCTATGCTGATCTTGGTCCTGGGAATCCAGAGTGCTAGCACCTCAGGACAGAAAGTTCCTTAGAGAACTCAGA
i cebCap1.NW_016108108v1   C 0 I 179
s aotNan1.NW_018494050v1      102036 179 -    285216 AGGTTATTCCTGGAGAGTAAGTACAGTGAGGTAGAAAAGGATCCATTGGGATTGGGAGAATAAAGGTTCATTACT----TTTATTTATGAGAAAC--AACAAAATGAGCTTTCTCCTATACTGATCTTGGTCCCTGGAGTTCAGAGTAT--GCTTCACAGACCAGAAAGTTCCTCAGAGGACCCAGA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1487074 161 -   2232465 AAGATATTTCTGGAAAGTAAGTAAAGTGAGCTTTAAAAAACTTCTCTGGGATTGAGAGAATAAGAGTTCATTGTT----TATTTTTAAGAAAAACAAAAAAAAATGAGCTTTGCTGTAGACTGAACTTG----------------------CCATTTCAGATCAGACACTTCCTTAGAAGACCCAGA
i otoGar3.GL873742         C 0 C 0

a score=1084135.000000
s hg38.chr6_GL000254v2_alt     60989 127 +   4827813 GAAGTGCTTTTTACTTCCACCAAATTTCAGCTGAGGTGAATGCTGTCTTTTCGTCATTTGTTG-------------------TGTGTTTGTAGTTAAGTAGT-----TTAAGTTTCAGAGTTTGTGGGTCTCCAATGGAAAAG--GTTACCAC
s panTro5.chr6              29031832 127 + 175400573 GAAGTGCTTTTTACTTCCACCAAATTTCAGCTGAGGTGAATGCTGTCTTTTCGTCATTTGTTG-------------------TGTGTTTGTAGTTAAGTAGT-----TTAAGTTTCAGAGTTTGTGGGTCTCCAATGGAAAAA--GTTACCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29275984 127 + 173848474 GAAGTGCTTTTTACTTCCACCAAATTTCAGCTGAGGTGAATGCTGTCTTTTCGTCATTTGTTG-------------------TGTGTTTGTAGTTAAGTAGT-----TTAAGTTTCAGAGTTTGTGGGTCTCCAATGGAAAAA--GTTACCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5074711 127 +   6154872 GAAGTGCTTTTTACTTCCACCAAATTTCAGCTGAGGTGAATGCTGTCTTTTCGTCATTTGTTG-------------------TGTGTTTGTAGTTAAGTAGT-----TTAAGTTTCAGAGTTTGTGGGTCTCCAATGGAAAAA--GTTACCAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74097408 127 + 122973662 GAAGTGCTTTTTACTTCCACCAAATTTCAGCTGAGGTGAATGCTGTCTTTTAGTCATTTGTTG-------------------TGTGTTTGTAGTTAAGTAGT-----TTAAGTTTCAGAGTTTGTGGGTCTCCAATGGAAAAA--GTGACCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29218020 127 + 172585720 GAAGTGCTTTTTACTTCCACCAAATTTCAGCTGACGTGAATGCTATCTGTTTGTCATTTGCTG-------------------TGTGTTTGTAGTTAAATAGT-----TTAAGTTTCAGAGTTTGTGGGTCTCCAATGGAAAAA--GTGACCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28906621 127 - 170955103 GAAGTGCTTTTTACTTCCACCAAATTTCAGCTGACGTGAATGCTATCTGTTTGTCATTTGCTG-------------------TGTGTTTGTAGTTAAATAGT-----TTAAGTTTCAGAGTTTGTGGGTCTCCAATGGAAAAA--GTGACCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1883050 127 -   2996164 GAAGTGCTTTTTACTTCCACCAAATTTCAGCTGACGTGAATGCTATCTGTTTGTCATTTGCTG-------------------TGTGTTTGTAGTTAAATAGT-----TTAAGTTTCAGAGTTTGTGGGTCTCCAATGGAAAAA--GTGACCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1771580 127 -   2157725 GAAGTGCTTTTTACTTCCACCAAATTTTAGCTGAGGTGAATGCTATCTGTTTGTCATTTGCTG-------------------TGTGTTTGTAGTTAAATAGT-----TTAAGTTTCAGAGTTTGTGGGTCTCCAATGGAAAAA--GTGACCAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28224692 127 -  71996105 GAAGTGCTTTTTACTTCCACCAAATTTCAACTGAGGTGAATGCTATCTGTTTGTCATTTGCTG-------------------TGTGTTTGTAGTTAAATAGT-----TTAAGTTTCAGAGTTTGTGGGTCTCCAATGGAAAAA--GTGACCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1888482 127 +   2316924 GAAGTGCTTTTTACTTCCACCAAATTTTAGCTGAGGTGAATGCTATCTGTTTGTCATTTGCTG-------------------TGTGTTTGTAGTTAAATAGT-----TTAAGTTTCAGAGTTTGTGGGTCTCCAATGGAAAAA--GTGACCAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782527 127 -   3067355 GAAGTGCTTTTTACTTCCACCAAATTTCAGCTGAGATGACTGCTATCTTTTCATCATTTGCCC-------------------TGTGTTTGTAGTTAAATAGT-----TTAAGTTTCAAACTATGTGGGTCTCTAATGGAAAAA--GTGACCAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340860 132 - 171630274 GAAGTGCTTTCCCC----------TTTCAGCGGAAGCAACTGTGGTCTTTTCCTCATTTGTCATTATGGTTGTCATTTATCGTATGCTTGTAGTTAAATAGT-----TTACA---CTAAGTTTTAGAGTTTTTAGTGAAAAGATTTTTAC---
i calJac3.chr4             C 0 T 21047
s saiBol1.JH378348            163724 127 -    375362 GAAATACTTTTTACTCCCACTAAATTTCAGCTTAGGTAACCGCTATCTTTTCATCACTTGTCA-------------------TGTGTTTGTAGTTAAATAGT-----TTAAGTTTCCGAGTTTGTGATTCTCTAATGGAAAAA--GTGACCGC
i saiBol1.JH378348         C 0 I 1
s aotNan1.NW_018494050v1      102215 127 -    285216 GAAATACTTTTTACTTCCAGCAAATTTCAGCTGAGGTAACCGCTATCTTTTCATCATTTGCCA-------------------TGTGTTTGTAGTTAAATAGC-----TTAAGGTTCCGAGTTTGTGGGTCTCTAATGGAAAAA--GTGACCAC
i aotNan1.NW_018494050v1   C 0 I 1
s otoGar3.GL873742           1487235 126 -   2232465 GAAGTACTATTTCCCTTTACCAAATTTCAGCGGAAGTGACTGCCGTC------TCATTTGTCC-------------------TATGTTTGTAGTTAAATTGTTTATGTTAAGCTTCAGAGTTTGTGGGTCTCTGACAGAAAAA--GTAACCAT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      165404 179 -    373274 I

a score=331444.000000
s hg38.chr6_GL000254v2_alt     61116 40 +   4827813 CA---CACATCA-----AACCATCAACCCCTGGCAGTGTAATCTTTTA
s panTro5.chr6              29031959 40 + 175400573 CA---CACAACA-----AACCATCAACCCCTGGCAGTGTAATCTTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29276111 40 + 173848474 CA---CACATCA-----AACCATCAACCCCTGGCAGTGTAATCTTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5074838 40 +   6154872 CA---CACATCA-----AATCATCAACCCCTGGCAGTGTAATCTTTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74097535 40 + 122973662 CA---CACATCA-----AATCATCAACCCCTGGCAGTGTAATCTTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29218147 40 + 172585720 CA---CACATCA-----AATCATCAACCCCTGGCAGTGTAATCTTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28906748 40 - 170955103 CA---CACATCA-----AATCATCAACCCCTGGCAGTGTAATCTTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1883177 40 -   2996164 CA---CACATCA-----AATCATCAACCCCTGGCAGTGTAATCTTTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1771707 40 -   2157725 CA---CACATCA-----AATCATCAACCCCTGGCAGTGTAATCTTTTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28224819 40 -  71996105 CA---CACATCA-----AATCATCAACCCCTGGCAGTGTAATCTTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1888609 40 +   2316924 CA---CACATCA-----AATCATCAACCCCTGGCAGTGTAATCTTTTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782654 41 -   3067355 CAG--CACATCA-----AACTGTCAACCACCGGCCGTGTAATCGTTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171319945 45 - 171630274 AG---TGCATCGCCAGCAATCATTAACCACTGGCAGTGGAATCCTTTA
i calJac3.chr4             T 21047 I 48
s saiBol1.JH378348            163852 40 -    375362 AG---CACATCA-----AATCATCAAGCACTGGCAGTGAAATCTTTTA
i saiBol1.JH378348         I 1 C 0
s aotNan1.NW_018494050v1      102343 40 -    285216 GA---CACATCA-----AACCTTCAACCACTGGCAGTGAAATCTTTTA
i aotNan1.NW_018494050v1   I 1 C 0
s otoGar3.GL873742           1487361 38 -   2232465 --CACCACATCA-----AACTGTCAACCACTGGCAGCGAAATGGA---
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      165404 179 -    373274 I

a score=328405.000000
s hg38.chr6_GL000254v2_alt     61156 40 +   4827813 GTGAAAGCTTGTAG----GGCTTCTGCAACCTGG-TTAGGAGGAG
s panTro5.chr6              29031999 40 + 175400573 GTGAAAGCTTGTAG----GGCTTCTGCAACCTGG-TTAGGAGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29276151 40 + 173848474 GTGAAAGCTTGTAG----GGCTTCTGCAACCTGG-TTAGGAGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5074878 40 +   6154872 GTGAAAGCTTGTAG----GGCTTCTGCAACCTGG-TTAGGAGGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74097575 40 + 122973662 GTGAAAGCTTGTAG----GGCTTCTGCAACCTGG-TTAGGGGGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29218187 40 + 172585720 GTGAAATCTTGTAG----GGCTTCTGCAACCTGG-TTAGGGGGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28906788 40 - 170955103 GTGAAATCTTGTAG----GGCTTCTGCAACCTGG-TTAGGGGGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1883217 40 -   2996164 GTGAAATCTTGTAG----GGCTTCTGCAACCTGG-TTAGGGGGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1771747 40 -   2157725 GTGAAATCTTGTAG----GGCTTCTGCAACCTGG-TTAGGGGGAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28224859 40 -  71996105 GTGAAATCTTGTAG----GGCTTCTGCAACCTGG-TTAGGGGGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1888649 40 +   2316924 GTGAAATCTTGTAG----GGCTTCTGCAACCTGG-TTAGGGGGAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782695 40 -   3067355 GTGAAAGCTTGTAG----GGCTTCTGCAACCTGG-TTTGAGGGAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            163892 40 -    375362 GTGAAATCTTGAAG----GGCTTCTGCAGCCTGG-TTAGGAAGAG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      102383 40 -    285216 GTGAAAGCTCGCAG----GGCTTCTGCAGCCTGG-TTAGGAGGAG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1487399 44 -   2232465 ATGAAAGATT-TAGTGACAGTTTCTGCAAGCAGGTTTAGGAAGAA
i otoGar3.GL873742         C 0 I 104
e cebCap1.NW_016108108v1      165404 179 -    373274 I
e calJac3.chr4             171319990 48 - 171630274 I

a score=40558.000000
s hg38.chr6_GL000254v2_alt     61196 6 +   4827813 TTAGAA
s panTro5.chr6              29032039 6 + 175400573 TTAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29276191 6 + 173848474 TTAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5074918 6 +   6154872 TTAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74097615 6 + 122973662 TTAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29218227 6 + 172585720 TTGGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28906828 6 - 170955103 TTGGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1883257 6 -   2996164 TTGGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1771787 6 -   2157725 TTAGAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28224899 6 -  71996105 TTGGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1888689 6 +   2316924 TTAGAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782735 6 -   3067355 TTAAAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            163932 6 -    375362 TTAGAA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      102423 4 -    285216 TTAG--
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1487547 6 -   2232465 ttaaaa
i otoGar3.GL873742         I 104 C 0
e cebCap1.NW_016108108v1      165404 179 -    373274 I
e calJac3.chr4             171319990 48 - 171630274 I

a score=232645.000000
s hg38.chr6_GL000254v2_alt     61202 26 +   4827813 AAAGAAACAGAAAAAGACTTGAGCCT
s panTro5.chr6              29032045 26 + 175400573 AAAGAAACAGAAAAAGACTTGAGCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29276197 26 + 173848474 AAAGAAACAGAAAAAGACTTGAGCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5074924 26 +   6154872 AAAGAAACAGAAAAAGACTTGAGCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74097621 26 + 122973662 AAAGAAACAGAAAAGGACTTGAGCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29218233 26 + 172585720 AAAGAAACAGAAGAGGACTTGAGCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28906834 26 - 170955103 AAAGAAACAGAAAAGGACTTGAGCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1883263 26 -   2996164 AAAGAAACAGAaaaggacttgagcct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1771793 26 -   2157725 AAAGAAACAGAaaaggacttgagcct
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28224905 26 -  71996105 AAAGAAACAGAAAAGGACTTGAGCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1888695 26 +   2316924 AAAGAAACAGAaaaggacttgagcct
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782741 26 -   3067355 GAAGAAACAGAAAAGGACTTGAGGCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171320038 23 - 171630274 AAAGAAAC--AAAAGAACTTGAGCC-
i calJac3.chr4             I 48 C 0
s saiBol1.JH378348            163938 26 -    375362 GAAGAAACAGAAAAGGACTTGAGCCT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      102427 25 -    285216 -AAGAAACAGAAAAGGACTTGAGCCT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1487553 26 -   2232465 aaaaaaaaaaattaaaaaTTaaaact
i otoGar3.GL873742         C 0 I 260
e cebCap1.NW_016108108v1      165404 179 -    373274 I

a score=234135.000000
s hg38.chr6_GL000254v2_alt     61228 27 +   4827813 TTTAGCTTCTGATCTGAAATCAGACTT
s panTro5.chr6              29032071 27 + 175400573 TTTAGCTTCTGATGTGAAATCAGACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29276223 27 + 173848474 TTTAGCTTCTGATGTGAAATCAGACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5074950 27 +   6154872 TTTAGCTTCTGACCTGAAATCAGACTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74097647 27 + 122973662 TTTAGCTTCCGATCTGAAATCAGACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29218259 27 + 172585720 TTTAGCTTCTGATCTGAAATCAGACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28906860 27 - 170955103 TTTAGCTTCTGATCTGAAATCAGACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1883289 27 -   2996164 tttagcttctgatctgaaatcagacTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1771819 27 -   2157725 tttagcttctgatctgaaatcagactt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28224931 27 -  71996105 TTTAGCTTCTGATCAGAAATCAGACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1888721 27 +   2316924 tttagcttctgatctgaaatcagactt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782767 27 -   3067355 TTTAGCTTCCGATCTGAAATCAGACTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171320061 27 - 171630274 TTAACCTTCTGATCTAAAATCAGACTT
i calJac3.chr4             C 0 I 20947
s saiBol1.JH378348            163964 27 -    375362 TTTAGCTTCCCACCTGAAATCAGACTT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      102452 27 -    285216 TTTAGCTTCCCACCTGAAATCAGACTT
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1487579 260 -   2232465 I
e cebCap1.NW_016108108v1      165404 179 -    373274 I

a score=19166.000000
s hg38.chr6_GL000254v2_alt     61255 2 +   4827813 GG
s panTro5.chr6              29032098 2 + 175400573 GG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29276250 2 + 173848474 GG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5074977 2 +   6154872 GG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74097674 2 + 122973662 GG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29218286 2 + 172585720 GG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28906887 2 - 170955103 GG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1883316 2 -   2996164 GG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1771846 2 -   2157725 gg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28224958 2 -  71996105 GG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1888748 2 +   2316924 gg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782794 2 -   3067355 GG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171341035 2 - 171630274 AG
i calJac3.chr4             I 20947 C 0
s saiBol1.JH378348            163991 2 -    375362 GG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      102479 2 -    285216 GG
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1487579 260 -   2232465 I
e cebCap1.NW_016108108v1      165404 179 -    373274 I

a score=812156.000000
s hg38.chr6_GL000254v2_alt     61257 92 +   4827813 GCCACACAGGTCTATGGTTTCTGATGATTTCATTTACAGCTAGAAATTGGCTGGATGGCCAGGAATACTACTTGCTT-CCCCCGTGCGTGGTC
s panTro5.chr6              29032100 92 + 175400573 GCCACACAGGTCTATGGTTTCTGATGATTTCATTTACAGCTAGAAATTGGCTGGATGGCCAGGAATACTACTTGCTT-CCCCCGTGCGTCGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29276252 92 + 173848474 GCCACACAGGTCTATGGTTTCTGATGATTTCATTTACAGCTAGAAATTGGCTGGATGGCCAGGAATACTACTTGCTT-CCCCCGTGCGTCGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5074979 92 +   6154872 GCCACACAGTTCTATGGTTTCTGATGATTTCATTTACAGCTAGAAATCGGCTGGATGGCCAGGAATACTACTTGCTT-CCCCCGTGCGTGGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74097676 92 + 122973662 GCCACACAGTCCTATGGTTTCTGATGATTTCTTTTACAGCTAGAAATCGGCTGGATGGCCAGGAATACTACTTGCTT-CCCCCGTGCGTGGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29218288 93 + 172585720 GCCGCACAGTTCTACGGTTTCTGATGATTTCATTTACAGTTAGAAATCAGCTGGATGACCAGGAATGCTACTTGCTTCCCCCCGTGCGTGGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28906889 93 - 170955103 GCCGCACAGTTCTACGGTTTCTGATGATTTCATTTACAGTTAGAAATCAGCTGGATGACCAGGAATGCTACTTGCTTCCCCCCGTGCGTGGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1883318 93 -   2996164 GCCGCACAGTTCTACGGTTTCTGATGATTTCATTTACAGTTAGAAATCAGCTGGATGACCAGGAATGCTACTTGCTTCCCCCCGTGCGTGGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1771848 93 -   2157725 gccacacagTTCTACAGTTTCTGATGATTTCATTTACAGTTAGAAATCAGCTGGATGGCCAGGAATGCTACTTGCTTCCCCCCGTGCGTGGTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28224960 93 -  71996105 GCCGCACAGTTCTACGGTTTCTGATGATTTCATTTACAGTTAGAAATCAGCTGGATGACCAGGAATGCTACTTGCTTCCCCCCGTGCGTGGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1888750 93 +   2316924 gccacacagTTCTACAGTTTCTGATGATTTCATTTACAGTTAGAAATCAGCTGGATGGCCAGGAATGCTACTTGCTTCCCCCCGTGCGTGGTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782796 92 -   3067355 GCCGCACAGTTCCATGGTTCCTGACGATTTCATTTACAACTAGAAATCGGCTGCATGGCCAGGAATACTACTTGCTT-CCCTCGTGCATGGTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171341037 92 - 171630274 GCCACACAGTTCTATGGTTTCTGATTATTTTATTTACAACTAGAAAGTGGCTGCATAGCCAGGAATAATACTCTCTT-CCATAGTGTGTGGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            163993 90 -    375362 GCCACCGAGTTCTATGGTTTCCGATTATTGCATTTACAACGAGGGATTGGCTGGA-GGCCAAGAATACTATTTGCTT-CCCTTGTGC-TGGTC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      165583 92 -    373274 GCCACACAGTTCTATGGTTTCTGATTATTTTATTTACAACTAGAAATTGACTGGATAGCCAGGAACAATACTTGCTT-CCATAGTGCATGGTT
i cebCap1.NW_016108108v1   I 179 C 0
s aotNan1.NW_018494050v1      102481 90 -    285216 GCCACCCAGTTCTACGGTTTCTGATGATTTCATTTACAACTAGAAATTGGCTGGA-GGCCAAGAATACTATTTGCTT-CCCTTGTGC-TGGTC
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1487579 260 -   2232465 I

a score=1495239.000000
s hg38.chr6_GL000254v2_alt     61349 186 +   4827813 CATGTTAATGATTGATGGGACTGCTT--AGAAAGAATAGGCGGATAATCCTAGGCAGCAAATAACCTCAAGTGAATGAACACGCATCA-CC-CTCTGTA-TGAGAGAGAAATGCAG--AGGCCAACACAATTCACCTTGAC-AGAC-AGAAAAATTT-------AAAGTTGGGGAATA----TCATGGACCGCT--TCTTACTGGTGT
s panTro5.chr6              29032192 186 + 175400573 CATGTTAATGATTGATGGGACTGCTT--AGAAAGGATAGGCGGGTAATCCTAGGCAGCAAATAACCTCAAGTGAATGAACACGAATCA-CC-CTCTGTA-TGAGAGAGAAATGCAG--AGGCCAACACAATTCACCTTGAC-AGAC-AGGAAAATTT-------AAAGTTAGGGAATA----TCATGGACCGCT--TCTTACTGGTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29276344 186 + 173848474 CATGTTAATGATTGATGGGACTGCTT--AGAAAGGATAGGCGGGTAATCCTAGGCAGCAAATAACCTCAAGTGAATGAACACGAATCA-CC-CTCTGTA-TGAGAGAGAAATGCAG--AGGCCAACACAATTCACCTTGAC-AGAC-AGAAAAATTT-------AAGGTTGGGGAATA----TCATGGACAGCT--TCTTACTGGTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5075071 185 +   6154872 CATGTTAATGATTGATGGGACTGCTT--AGAAAGAATAGGCGGATAATCCTAGGCAGCAAATAACCTCAAGTGAATGAACACGAATCA-CC-CTCTGTA-TGAGA-AGAAATGCAG--AGGCCAACACGATTCACCTTGAC-AGAC-AGAAAAATTT-------AAAGTTGGGGAATA----TCATGGACCGCT--TCTTACTGGTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74097768 186 + 122973662 CATGTTAATGATTGATGGGACTGCTT--AGAAAGAATAGGCGGATAATCCTAGGCAGCAAATAACCTCAAGTGAATGAAAACGAACCA-CC-CTCTGTA-TGAGAGAGAAATGCAG--AGGCCAACACAATTCACCTTGAC-AGAC-AGAAAAATTT-------AAAGTTGGGGAATA----TCATGGACTGCT--TCTTACTGGTGT
i nomLeu3.chr1a            C 0 I 8382
s rheMac8.chr4              29218381 182 + 172585720 CATGTTAATCATTGATGGGTCTGTTT--ACAAAGAATAGGCAGATAATCCTAAGCAGCAAATAACCTCA----GGTGAACACGAATCA-CC-CTCTGCA-TGAGAGAGAAATGCAG--AGACCAACACAATTCACCTTGAC-AGAC-AGAAAATTTT-------AAAGTTGGGGAATG----TCATGGACCGCT--TCTTACTGGTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28906982 182 - 170955103 CATGTTAATGATTGATGGGTCTGTTT--ACAAAGAATAGGCGGATAATCCTAAGCAGCAAATAACCTCA----GGTGAACACGAATCA-CC-CTCTGCA-TGAGAGAGAAATGCAG--AGACCAACACAATTCACCTTGAC-AGAC-AGAAAATTTT-------AAAGTTGGGGAATG----TCATGGACCGCT--TCTTACTGGTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1883411 182 -   2996164 CATGTTAATGATTGATGGGTCTGTTT--ACAAAGAATAGGCGGATAATCCTAAGCAGCAAATAACCTCA----GGTGAACACGAATCA-CC-CTCTGCA-TGAGAGAGAAATGCAG--AGACCAACACAATTCACCTTGAC-AGAC-AGAAAATTTT-------AAAGTTGGGGAATG----TCATGGACCGCT--TCTTACTGGTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1771941 182 -   2157725 CATGTTAATGATTGATGGGTCTGTTT--ACCAAGAATAGGCGGATAATCCTAAGCAGCAAATAACCTCA----CGTGAACACGAATCA-CC-CTCTGTA-TGAGAGAGAAATGCAG--AGACCAACACAATTCACTTTGAC-AGAC-AGAAAATTTT-------AAAGTTGGGGAATG----TCATGGACCGCT--TCTTACTGGTGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28225053 182 -  71996105 CATGTTAATGATTGATGGGTCTGTTT--ACGAAGAATAGGAGAATAATCCTAAGCAGCAAATAACCTCA----AGTGAACACGAATCA-CC-CTCTGTA-TGAGAGAGAAATGCAG--AGACCAACACAATTCACCTTGAC-AGAC-AGAAAATTTT-------AAAGTTGGGGAATG----TCATGGACCGCT--TCTTACTGGTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1888843 182 +   2316924 CATGTTAATGATTGATGGGTCTGTTT--GCCAAGAATAGGCGGGTAATCCTAAGCAGCAAATAACCTCA----CGTGAACACGAATCA-CC-CTCTGTA-TGAGAGAGAAATGCAG--AGACCAACACAATTCACTTTGAC-AGAC-AGAAAATTCT-------AAAGTTGGGGAATG----TCATGGACCGCT--TCTTACTGGTGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782888 180 -   3067355 CATGTTAGTAATTGGTGGA-CAGCTT--AGAAAATATAAGTGGATAACCCTAAGCAGCAAATAGATTTAAAAGAATAAACACGAGTCA-CCTCTGTGTA-TGACAGAGAAATG--------CCAACACAATTCACCTTGAC-AGAC-AGAAAATTTT-------AAAGTTGGGGATTA----TCACGGGCCGCT--TCTTACTAGTAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171341129 188 - 171630274 CACCTTAGTGGCTCCTGGGACTCCTT--AGCAAGAGTAGATGGCTAATCCTAAACAACAAATAACCTTACGTGAATGAACAGGAAGTATCT-CTCTGTA-TGAGAAAGAGAGGCAG--AGGTCAACACAA-ACATCTTGAC-AAGGCAGGAAATTTT-----GGACAGCTCGGGAAGG----TCATGGAGTGCT--TCTTAC-AGTGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            164083 184 -    375362 CATGTTAACGATTGCTGGGACTGCTT--AGAAAGGATAGGTGAATAATCCTAAGCAGCAAGTAACCTCAAATGAATGAACACGAATCA-CT-CTCCGGA-TGAGGAAGAAATG--G--AGGCCAACACAATTCACCTTGAC-ACAA-AGAAAATTTT-------AAAGTTGGGGAATA----TTATGGACCTCT--TCTTACTGGTGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      165675 188 -    373274 CACCTTAGTGGCTCCTGGGACTCCTT--AGCAAGAGTAGGTGGCTAATCCAAAACAACAAATAGCCATAAGTGAATGAACAGGAAGTATCT-CTCTGTA-TGAGAGAGAGATGTAG--GGGTCAACACAA-ACATCTTGAT-AAGGCAGGAAATTTT-----GGACAGCTGGGGAAGG----TCATGGAGTGCT--TCTTAC-AGTGC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      102571 184 -    285216 CACGTTAACGATTGCTGGGACTTCTC--AGAAAGTATAGGTGGATAATCCTAAGCAGCAAATAACCTCAAGTGGATGAACACGAATCA-CC-CTCTGGA-TGAGAGAGAAATG--G--AGGCCAACATAATTCACCTTGAC-ACAA-AGAAAATTTT-------AAAGTTGGGGAATA----TCATGGACCTCT--TCTTACTGGTGT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1487839 166 -   2232465 CATGGTAGTGATTTTCGGGAGTGTCTGCAGAGAGAGTAGGAGG---------------------------------------GAATTT-GA-ATTTGGATTGAGAAACTAATACAGAAAGGCTAACAGAACTCTGCTTGTCAAGGT-AGTGTATTGTATTTTGGAGAGCTGGAGAAAGGAATTTAAAGAGTGCTTCTCTTACAGGCCT
i otoGar3.GL873742         I 260 C 0

a score=851961.000000
s hg38.chr6_GL000254v2_alt     61535  95 +   4827813 CCCGGGGAAGAAAACACG-----------GCCtggaggtactggggatcgaacccaggacctcgtgcatgctaagcacgcgctctaccactgagctatacccccTC
s panTro5.chr6              29032378  95 + 175400573 CCCGGGGAAGAAAACATG-----------GCgtggaggtactggggatcgaacccagggcctcgtgcatgctaagcacgcgctctaccactgagctatacccccTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29276530  95 + 173848474 CCCGGGGAAGAAAACATG-----------GCgtggaggtactggggatcgaacccagggcctcgtgcatgctaagcacgcgctctaccactgagctatacccccTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5075256  95 +   6154872 CCCGGGGAAGAAAACGAG-----------GACtggaggtactagggatcgaacccagggcctcgtgcatgctaagcacgcgctctaccgctgagctatacccccTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29218563  95 + 172585720 CCCGGGGAAGAAAACGGA-----------ACCtggaggtactggggattgaacccagggcctcgtgcatgctaagcacgcgctctaccactgagctatacccccTT
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              28907164  95 - 170955103 CCCGGGGAAGAGAACAGA-----------ACCtggaggtactggggattgaacccagggcctcgtgcatgctaagcacgcgctctaccactgagctatacccccTT
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     1883593  95 -   2996164 CCCGGGGAAGAAAACGGA-----------ACCtggaggtactggggattgaacccagggcctcgtgcatgctaagcacgcgctctaccgctgagctatacccccTT
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012001495v1     1772123  95 -   2157725 CCCGGGGAAGAAAATGAA-----------ACCtggaggtactggggatcgaacccagggcctcgtgcatgctaagcacgcgctctaccactgagctatacccccTC
i cerAty1.NW_012001495v1   C 0 I 1
s chlSab2.chr17             28225235  95 -  71996105 CCCGGGGAAGAAAACGAA-----------TCCtggaagtactggggattgaacccagggcctcgtgcatgctaagcacgcgctctaccactgagctatacccccTT
i chlSab2.chr17            C 0 I 13
s manLeu1.NW_012104165v1     1889025  95 +   2316924 CCCGGGGAAGAAAGCGAA-----------ACCtggaggtactggggatcgaacccagggcctcgtgcatgctaagcacgcgccctaccactgagctatacccccTC
i manLeu1.NW_012104165v1   C 0 I 1
s colAng1.NW_012115566v1     1783068  94 -   3067355 CCC-GGGAAGAAAAGAAA-----------ACCtggaggtactggggattgaacccaggacctcgtgcatgctaagcacgcgctctaccactgagctacacccccTC
i colAng1.NW_012115566v1   C 0 T 21943
s calJac3.chr4             171341317  99 - 171630274 CTTGGGGAAGAAAATGGACC-------TCtggaggaggtactgggaattgaacccaagacttcatgcatgctaagtacatgctctatcactgggctatatccccTC
i calJac3.chr4             C 0 I 2
s saiBol1.JH378348            164267  94 -    375362 CCCGGGGAAGAAAACAA------------CAAtggaggtactggggattgaacccaggacctcatacatgctaagcatgcgctctaccactgagctacacccccTT
i saiBol1.JH378348         C 0 I 2
s cebCap1.NW_016108108v1      165863  99 -    373274 CTCGGGGAAGAAAATGGGCC-------TCtggaggaggtactggggattgaacccaagacctcatgcatgctaagtacatgctctaccactgggctatatccccTC
i cebCap1.NW_016108108v1   C 0 T 28038
s aotNan1.NW_018494050v1      102755  94 -    285216 CCTGTGGAAGAAAACAA------------tgatggaggtactggggatcgaacccaggacctcgtgcatgctaagcacgcgctctaacactgagctatacccccTT
i aotNan1.NW_018494050v1   C 0 I 2
s otoGar3.GL873742           1488005 105 -   2232465 -TTGTGAAGGAAGATGAAGAAAATAGGTCAATtggaggtactggggattgaacccaggacctcgtgcatgctaagcacgcgctctaccactgagctatacccccTC
i otoGar3.GL873742         C 0 C 0
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=-20472.000000
s hg38.chr6_GL000254v2_alt     61630 12 +   4827813 ------TGGACTCAGGGC
s panTro5.chr6              29032473 12 + 175400573 ------CGGACTCAAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29276625 12 + 173848474 ------CGGACTCAAAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5075351 12 +   6154872 ------CAGATTCAGGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29218659 12 + 172585720 ------ACGACCCAAATG
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              28907260 12 - 170955103 ------ACGACCCAAATG
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     1883689 12 -   2996164 ------ACGACCCAAATG
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012001495v1     1772219 12 -   2157725 ------ACGACCCAAGCG
i cerAty1.NW_012001495v1   I 1 C 0
s manLeu1.NW_012104165v1     1889121 12 +   2316924 ------ACGACCCAAGTG
i manLeu1.NW_012104165v1   I 1 C 0
s colAng1.NW_012115566v1     1761219  9 -   3067355 ------AGGGTGCGC---
i colAng1.NW_012115566v1   T 21943 I 3
s calJac3.chr4             171341418 11 - 171630274 ------AACTCCTGTGT-
i calJac3.chr4             I 2 C 0
s saiBol1.JH378348            164363 11 -    375362 ------GAAATGCGTGC-
i saiBol1.JH378348         I 2 C 0
s aotNan1.NW_018494050v1      102851 11 -    285216 ------GAAAACCAGAC-
i aotNan1.NW_018494050v1   I 2 C 0
s otoGar3.GL873742           1488110 13 -   2232465 TTTGAGAAGTATC-----
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e chlSab2.chr17             28225330 13 -  71996105 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=573086.000000
s hg38.chr6_GL000254v2_alt     61642 91 +   4827813 CTTCGGAAAACGCT----TTGGTGACGGCCAATATGTGAGCCTGCCCTCTG---T-GTCAGGATAATCACTATATGTTTCCAATTCCATTGTT----AATTCC
s panTro5.chr6              29032485 91 + 175400573 CTTCGGAAAACGCT----TTGGTGATGGCCAATATGTGAGCCTGCCCTCTG---T-GTCAGGATAATCACTATATGTTTCCAATTCCATTGTT----AATTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29276637 91 + 173848474 CTTCGGAAAACGCT----TTGGTGATGGCCAATATGTGAGCCTGCCCTCTG---T-GTCAGGATAATCACTATATGTTTCCAATTCCATTGTT----AATTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5075363 91 +   6154872 CCTCAGAAAACGCT----TTGGCGATGGCCAATATGTGAGCCTGCCCTCTG---T-GTCAGGATAATCACTATATGTTTCCAATTCCATTGTT----AATTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29218671 89 + 172585720 CTTCAGAAAACACT----TTGGTGACCGCCAATATCTGAGTCTGCCCTC-----T-GTCAGGATAATCATTATATGTTTCCAATTCCACTGTT----AATTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28907272 89 - 170955103 CTTCAGAAAACACT----TTGGTGACCGCCAATATCTGAGTCTGCCCTC-----T-GTCAGGATAATCATTATATGTTTCCAATTCCACTGTT----AATTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1883701 89 -   2996164 CTTCAGAAAACACT----TTGGTGACCGCCAATATCTGAGTCTGCCCTC-----T-GTCAGGATAATCATTATATGTTTCCAATTCCACTGTT----AATTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1772231 91 -   2157725 GTTCAGAAAACAGG----TTGGTGACCGCCAATATCTGAGTCTGCCCTCTG---T-GTCAGGATAATCATTATATGTTTCCAATTCCACTTTT----AATTCC
i cerAty1.NW_012001495v1   C 0 I 14401
s chlSab2.chr17             28225343 91 -  71996105 CTTCAGAAAACACT----TTGGTGACCGCCAATATCTGAGTCTGCCCTCTG---T-GTCAGGATAATCATTATATGTTTCCAATTCCACTGTT----AATTCC
i chlSab2.chr17            I 13 C 0
s manLeu1.NW_012104165v1     1889133 91 +   2316924 GTTCAGAAAACAGG----TTGGTGACCGCCAATATCTGAGTCTGCCCTCTG---T-GTCAGGATAATCATTATATGTTTCCAATTCCACTGTT----AATTCC
i manLeu1.NW_012104165v1   C 0 I 19869
s colAng1.NW_012115566v1     1761231 91 -   3067355 TTTCAGGAAACACT----TTGGTGACCGCCAATATCTGAGTCTGCCCTCTG---T-GTCAGGATAATCATTGTATGTTTCCAACTCCACTGTT----AATTCC
i colAng1.NW_012115566v1   I 3 C 0
s calJac3.chr4             171341429 92 - 171630274 ATTTGGAAAGCT--------GGTGACTGCCATTATCTGAGTATGCTCTATG---TCGTAAAGACAATTATCATGTGTGTTCATTTCTACTGTTTATGATTTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            164374 86 -    375362 CTTCTGAAAACC---------TTGTCCACTATTGTCTGAGTCTGTGCTTTG---T-GTCAGGACAATCACTGTGTGTTCCCAGTTCCACTGTT----AATTCC
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      102862 91 -    285216 CTTCCGAAAATCCT----TTGGTGACCCCCATTGTCTGAGTCTGCGCTTTG---T-GTCAGGACAACCACTGTGTGTTCCCAGTTCCACTGTT----AATTCC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1488123 99 -   2232465 TTTCAAGAAACCCTTTGATTGATGACCACCATTATCTAAGCCTAAATTCAGAGTT-CTCCGGACAGTTTCC---TGTTTTGAATTCAATTGTTTATAAATTCC
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=40956.000000
s hg38.chr6_GL000254v2_alt     61733 6 +   4827813 CTACAT
s panTro5.chr6              29032576 6 + 175400573 CTACAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29276728 6 + 173848474 CTACAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5075454 6 +   6154872 CTACAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29218760 6 + 172585720 CTACAT
i rheMac8.chr4             C 0 I 56231
s macFas5.chr4              28907361 6 - 170955103 CTACAT
i macFas5.chr4             C 0 I 16345
s macNem1.NW_012011356v1     1883790 6 -   2996164 CTACAT
i macNem1.NW_012011356v1   C 0 I 17699
s chlSab2.chr17             28225434 6 -  71996105 CTACAT
i chlSab2.chr17            C 0 I 15557
s colAng1.NW_012115566v1     1761322 6 -   3067355 CTACAT
i colAng1.NW_012115566v1   C 0 I 21983
s calJac3.chr4             171341521 6 - 171630274 CTATAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            164460 6 -    375362 CTACAT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      102953 6 -    285216 CTACAT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1488222 6 -   2232465 CTACAC
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e manLeu1.NW_012104165v1     1889224 19869 +   2316924 I
e cerAty1.NW_012001495v1     1772322 14401 -   2157725 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=39767.000000
s hg38.chr6_GL000254v2_alt     61739 27 +   4827813 GAAGCGCTTCCTCTTTTAGGCACGGCT
s panTro5.chr6              29032582 27 + 175400573 GAAGCGCTTCCTCTTTTAGGCACGGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29276734 27 + 173848474 GAAGCGCTTCCTCTTTTAGGCACGGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5075460 27 +   6154872 GAAGCGCTTCCTCTTTTAGGCACGGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28923712 27 - 170955103 GAAGCGTTTCCTGTCTTAGGGCCCGCT
i macFas5.chr4             I 16345 C 0
s calJac3.chr4             171341527 27 - 171630274 CTAAGTGCTCCTGTCTTAGGCACAGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            164466 26 -    375362 GCAGCTGC-CCTCTTGTAGACACTCCG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      102959 27 -    285216 GAAGCCCTTCCTCTTGTAGGCACGGCT
i aotNan1.NW_018494050v1   C 0 I 6
s otoGar3.GL873742           1488228 25 -   2232465 --TATGCTCTCTGTCTTATGCACAACT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e colAng1.NW_012115566v1     1761328 21983 -   3067355 I
e manLeu1.NW_012104165v1     1889224 19869 +   2316924 I
e chlSab2.chr17             28225440 15557 -  71996105 I
e cerAty1.NW_012001495v1     1772322 14401 -   2157725 I
e macNem1.NW_012011356v1     1883796 17699 -   2996164 I
e rheMac8.chr4              29218766 56231 + 172585720 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=6511.000000
s hg38.chr6_GL000254v2_alt     61766 7 +   4827813 GGGCCAA
s panTro5.chr6              29032609 7 + 175400573 GTGCCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29276761 7 + 173848474 GTGCCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5075487 7 +   6154872 ATACCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28923739 7 - 170955103 ACACCAA
i macFas5.chr4             C 0 C 0
s calJac3.chr4             171341554 7 - 171630274 ACATCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            164492 7 -    375362 ACATCAA
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1488253 7 -   2232465 ACACGAG
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      102986 6 -    285216 I
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e colAng1.NW_012115566v1     1761328 21983 -   3067355 I
e manLeu1.NW_012104165v1     1889224 19869 +   2316924 I
e chlSab2.chr17             28225440 15557 -  71996105 I
e cerAty1.NW_012001495v1     1772322 14401 -   2157725 I
e macNem1.NW_012011356v1     1883796 17699 -   2996164 I
e rheMac8.chr4              29218766 56231 + 172585720 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=7047.000000
s hg38.chr6_GL000254v2_alt     61773 4 +   4827813 AAGA
s panTro5.chr6              29032616 4 + 175400573 AAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29276768 4 + 173848474 AAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5075494 4 +   6154872 AAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28923746 4 - 170955103 AAGA
i macFas5.chr4             C 0 C 0
s calJac3.chr4             171341561 4 - 171630274 AAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            164499 4 -    375362 AAGA
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1488260 0 -   2232465 C
e aotNan1.NW_018494050v1      102986 6 -    285216 I
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e colAng1.NW_012115566v1     1761328 21983 -   3067355 I
e manLeu1.NW_012104165v1     1889224 19869 +   2316924 I
e chlSab2.chr17             28225440 15557 -  71996105 I
e cerAty1.NW_012001495v1     1772322 14401 -   2157725 I
e macNem1.NW_012011356v1     1883796 17699 -   2996164 I
e rheMac8.chr4              29218766 56231 + 172585720 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=2332.000000
s hg38.chr6_GL000254v2_alt     61777 3 +   4827813 AGA
s panTro5.chr6              29032620 3 + 175400573 AGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29276772 3 + 173848474 AGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5075498 3 +   6154872 AGG
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chr4             171341565 3 - 171630274 AGA
i calJac3.chr4             C 0 C 0
e saiBol1.JH378348            164503 0 -    375362 C
e otoGar3.GL873742           1488260 0 -   2232465 C
e aotNan1.NW_018494050v1      102986 6 -    285216 I
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e colAng1.NW_012115566v1     1761328 21983 -   3067355 I
e manLeu1.NW_012104165v1     1889224 19869 +   2316924 I
e chlSab2.chr17             28225440 15557 -  71996105 I
e cerAty1.NW_012001495v1     1772322 14401 -   2157725 I
e macNem1.NW_012011356v1     1883796 17699 -   2996164 I
e macFas5.chr4              28923750 0 - 170955103 C
e rheMac8.chr4              29218766 56231 + 172585720 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=189521.000000
s hg38.chr6_GL000254v2_alt     61780 381 +   4827813 GTAGCTTAgccgggtgcagtggcttatgcctgtaatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagttcaagaccagcctgggcaagatagtgaaaccctgtctctactaaaaatagaaaaattagccgggcgtggtgacaggcgcctgtaatcccagctactctgaagtagagaattgcttgaacccgggaggcagaggttgcagtgagccgagatcgggccactgcactccagcttgagcgacagagcgagactccgtctc-aaaaaaagaaagaaagaagaaagagagagagagagagagagag-agagagacagaaacaaagaaaga------aagagagaaataaag--agaaagaaagaa------------agagaaaag
s panTro5.chr6              29032623 398 + 175400573 GTAGCTTAgccgggtgcagtggcttatgcctgtaatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagttcaagaccagcctgggcaagatagtgaaaccctgtctctactaaaaatacaaaaatcagccgggcgtggtgacaggcgcctgtaatcccagctactctgaagtagagaattgcttgaacccgggaggcagaggttgcagtgagccgagatcgggccactgcactccagcttgagcgacagagcgagactccctctc-aaaaaaagaaagaaagaaagaagaaagagagagagagagagag-agagagacagaaagaaagaaagaaag---aagaaagaaagaaagaaagaaagaaagaaagagaaagaaagagagaaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29276775 401 + 173848474 GTAGCTTAgccgggtgcagtggcttatgcctgtaatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagttcaagaccagcctgggcaagatagtgaaaccctgtctctactaaaaatacaaaaatcagccgggcgtggtgacaggcgcctgtaatcccagctactctgaagtagagaattgcttgaacccgggaggcagaggttgcagtgagccgagatcgggccactgcactccagcttgagcgacagagcgagactccctctc-aaaaaaagaaagaaagaagaaagagagagagagagagagagagaagaaacaaagaaagaaagaaagaaagagaaagaaagaaataaagaaagaaagaaagaaagaaagaagaa-agagaaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5075501 375 +   6154872 CTAGCTTAgccgggtgcggtggcttacgcctgtaatcccagcactttgggaggctgaggcaggtggatcgcgaggtcaggagttcaagaccagcctgggcaagatggtgaaaccctgtctctact-aaaatacaaaaattagcc-ggcgtgatgacaggctcctgtaatcccagctactctgaagtagagaattgcttgaacccgggaggcggaggttgcagtgagctgagatcgggccactgcactccagcttgagcgacagagcgagactccatctcaaaaaaaagaaagaaagaaagaagaaagaaagagag-----gag-agagagaaagaaagaaagaaaga------aagaaagaaagaaagaaagaaagaaaa--------------agagaaaag
i gorGor5.CYUI01015250v1   C 0 C 0
e saiBol1.JH378348            164503   0 -    375362 C
e otoGar3.GL873742           1488260   0 -   2232465 C
e aotNan1.NW_018494050v1      102986   6 -    285216 I
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171341568   0 - 171630274 C
e colAng1.NW_012115566v1     1761328 21983 -   3067355 I
e manLeu1.NW_012104165v1     1889224 19869 +   2316924 I
e chlSab2.chr17             28225440 15557 -  71996105 I
e cerAty1.NW_012001495v1     1772322 14401 -   2157725 I
e macNem1.NW_012011356v1     1883796 17699 -   2996164 I
e macFas5.chr4              28923750   0 - 170955103 C
e rheMac8.chr4              29218766 56231 + 172585720 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=4206.000000
s hg38.chr6_GL000254v2_alt     62161 5 +   4827813 aaagg
s panTro5.chr6              29033021 5 + 175400573 aaagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29277176 5 + 173848474 aaagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5075876 5 +   6154872 aaagg
i gorGor5.CYUI01015250v1   C 0 C 0
s aotNan1.NW_018494050v1      102992 5 -    285216 AAAGA
i aotNan1.NW_018494050v1   I 6 C 0
e saiBol1.JH378348            164503 0 -    375362 C
e otoGar3.GL873742           1488260 0 -   2232465 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171341568 0 - 171630274 C
e colAng1.NW_012115566v1     1761328 21983 -   3067355 I
e manLeu1.NW_012104165v1     1889224 19869 +   2316924 I
e chlSab2.chr17             28225440 15557 -  71996105 I
e cerAty1.NW_012001495v1     1772322 14401 -   2157725 I
e macNem1.NW_012011356v1     1883796 17699 -   2996164 I
e macFas5.chr4              28923750 0 - 170955103 C
e rheMac8.chr4              29218766 56231 + 172585720 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=6622.000000
s hg38.chr6_GL000254v2_alt     62166 4 +   4827813 aaag
s panTro5.chr6              29033026 4 + 175400573 aaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29277181 4 + 173848474 aaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5075881 4 +   6154872 aaag
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28923750 4 - 170955103 AAGG
i macFas5.chr4             C 0 C 0
s saiBol1.JH378348            164503 4 -    375362 AAAG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      102997 4 -    285216 AAGG
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1488260 0 -   2232465 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171341568 0 - 171630274 C
e colAng1.NW_012115566v1     1761328 21983 -   3067355 I
e manLeu1.NW_012104165v1     1889224 19869 +   2316924 I
e chlSab2.chr17             28225440 15557 -  71996105 I
e cerAty1.NW_012001495v1     1772322 14401 -   2157725 I
e macNem1.NW_012011356v1     1883796 17699 -   2996164 I
e rheMac8.chr4              29218766 56231 + 172585720 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=1694.000000
s hg38.chr6_GL000254v2_alt     62170 1 +   4827813 T
s panTro5.chr6              29033030 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29277185 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5075885 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28923754 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s calJac3.chr4             171341568 1 - 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            164507 1 -    375362 T
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      103001 1 -    285216 T
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1488260 0 -   2232465 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e colAng1.NW_012115566v1     1761328 21983 -   3067355 I
e manLeu1.NW_012104165v1     1889224 19869 +   2316924 I
e chlSab2.chr17             28225440 15557 -  71996105 I
e cerAty1.NW_012001495v1     1772322 14401 -   2157725 I
e macNem1.NW_012011356v1     1883796 17699 -   2996164 I
e rheMac8.chr4              29218766 56231 + 172585720 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=39053.000000
s hg38.chr6_GL000254v2_alt     62171 13 +   4827813 AGCTTAGTGGTAA
s panTro5.chr6              29033031 13 + 175400573 AGCTTAGTGGTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29277186 12 + 173848474 AGCTTAGTGGT-A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5075886 13 +   6154872 AGCTTAGTGGTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28923755 13 - 170955103 AGCTTAACAGTAC
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28240997 13 -  71996105 AGCTTAGTAGTAC
i chlSab2.chr17            I 15557 C 0
s manLeu1.NW_012104165v1     1909093 13 +   2316924 AGCTTAATAGTAC
i manLeu1.NW_012104165v1   I 19869 C 0
s colAng1.NW_012115566v1     1783311 13 -   3067355 AGCTTAATAGTAC
i colAng1.NW_012115566v1   I 21983 C 0
s calJac3.chr4             171341569 13 - 171630274 ACCCCAATGGTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            164508 13 -    375362 GGCTTCGTGGTAA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      103002 13 -    285216 GGCTTAGTGGTAA
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1488260  0 -   2232465 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e cerAty1.NW_012001495v1     1772322 14401 -   2157725 I
e macNem1.NW_012011356v1     1883796 17699 -   2996164 I
e rheMac8.chr4              29218766 56231 + 172585720 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=34667.000000
s hg38.chr6_GL000254v2_alt     62184 5 +   4827813 AAATA
s panTro5.chr6              29033044 5 + 175400573 AAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29277198 5 + 173848474 AAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5075899 5 +   6154872 AAATA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29274997 5 + 172585720 AAATA
i rheMac8.chr4             I 56231 C 0
s macFas5.chr4              28923768 5 - 170955103 AAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1901495 5 -   2996164 AAATA
i macNem1.NW_012011356v1   I 17699 C 0
s cerAty1.NW_012001495v1     1786723 5 -   2157725 AAATA
i cerAty1.NW_012001495v1   I 14401 C 0
s chlSab2.chr17             28241010 5 -  71996105 AAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1909106 5 +   2316924 AAATA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1783324 5 -   3067355 AAATA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171341582 5 - 171630274 AAAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            164521 5 -    375362 AAAGA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      103015 5 -    285216 AAAGA
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1488260 0 -   2232465 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=253049.000000
s hg38.chr6_GL000254v2_alt     62189 28 +   4827813 AAGGCACTGTTCCTGATTTGTGGTCAAC
s panTro5.chr6              29033049 28 + 175400573 AAGGCACTGTTCCTGATTTGTGGTCAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29277203 28 + 173848474 AAGGCACTGTTCCTGATTTGTGGTCAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5075904 28 +   6154872 AAGGCACTGTTCCTGATTTGTGGTCAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29275002 28 + 172585720 AAGGCACTGTTCCTGATTTGTGGTCAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28923773 28 - 170955103 AAGGCACTGTTCCTGATTTGTGGTCAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1901500 28 -   2996164 AAGGCACTGTTCCTGATTTGTGGTCAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1786728 28 -   2157725 AAGGCACTGTTCCTGATTTGTGGTCAGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28241015 28 -  71996105 AAGGCACTGTTCCTGATTTGTGGTCAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1909111 28 +   2316924 AAGGCACTGTTCCTGATTTGTGGTCAGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1783329 28 -   3067355 AAGGCACTGTTCCTGATTTGTGGTCAGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171341587 28 - 171630274 AAAGCGCTGTTACTGATTTGGGATCAGC
i calJac3.chr4             C 0 I 1843
s saiBol1.JH378348            164526 28 -    375362 AAGGCACTGATCCTGATTTGTGGTCAGC
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      103020 28 -    285216 AAGGCACTGCTCCTGATTTGTGGTCAGC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1488260 28 -   2232465 AAGGCACTGTTCTTGATTTGAGGTCATC
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=745046.000000
s hg38.chr6_GL000254v2_alt     62217 117 +   4827813 CCAAGATCAACTCACCCCAAGGTGGACTCTCCATC-ACGTTAGACTTCCTGGAGCATACTTGCA-TTCTATCATTTGAGTGTGTCCCGGTATACAACATTCTCTTGCAAAttttctgat---------------
s panTro5.chr6              29033077 117 + 175400573 CCAAGATCAACTCACCCCAAGGTGGACTCTCCATC-ACGTTAGACTTCCTGGAGCATACTTGCA-TTCTATCATTTAAGTGTGTCCCGTTATACAACATTCTCTTGCAAAttttctgat---------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29277231 117 + 173848474 CCAAGATCAACTCACCCCAAGGTGGACTCTCCATC-ACGTTAGACTTCCTGGAGCATACTTGCA-TTCTATCATTTAAGTGTGTCCCGGTATACAACATTCTCTTGCAAAttttctgat---------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5075932 116 +   6154872 CCAAGATCAACTCA-CCCAGGGTGGACTCTCCATC-ACGTTAGACTTCCTGGAGCATACTTGCA-TTCTATCATTTGAGTGTGTCCCAGTATACAACATTCTCTTGCAAAttttgtgat---------------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29275030 117 + 172585720 CCAAGATCAACTCACCCCAAGGTGGTCTCCCCATC-GCGTTAGATTTCCTGGAGCATACTTCCA-TTCAGTTATTTGAGTGTGTCCTGGCATACAACATTCTCTTGCAAAttttctgat---------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28923801 117 - 170955103 CCAAGATCAACTCACCCCAAGGTGGTCTCCCCATC-GCGTTAGATTTCCTGGAGCATACTTCCA-TTCAGTTATTTGAGTGTGTCCTGGCATACAACATTCTCTTGCAAAttttctgat---------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1901528 117 -   2996164 CCAAGATCAACTCACCCCAAGGTGGTCTCCCCATC-GCGTTAGATTTCCTGGAGCATACTTCCA-TTCAGTTATTTGAGTGTGTCCTGGCATACAACATTCTCTTGCAAAttttctgat---------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1786756 117 -   2157725 CCAAGATCAACTCACCCCAAGGTGGTCTCCCCATC-GAGTTAGATTTCCTGGAGCATACCTCCA-TTCAGTTATTTGAGTGTGTCCTGGCATACAACATTCTCTTGCAAATTTTCTGAT---------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28241043 117 -  71996105 CCAAGATCAACTCACCCTAAGGTGGGCTCCTCATC-GCGTCAGATTTCCTGGAGCATACTTCCA-TTCAGTCATTTGAGTGTGTCCTGGCATACAATATTCTCTTGCAAATTTTCTGAT---------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1909139 117 +   2316924 CCAAGATCAACTCACCCCAAGGTGGTCTCCCCATC-GCGTTAGATTTCCTGGAGCACACTTCCA-TTCAGTTATTTGAGTGTGTCCTGGCATACAACATTCTCTTGCAAATTTTCTGAT---------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1783357 117 -   3067355 CCAAGATCAACTCACCCCAAGGTGGGCTCCCCATT-GCCTTAGATTTCCTGGAGC-TACTTCCATTTCAGTCATTTGAGTGTGTCCTGGCATACAACATTCTCTTGCAAAttttctgat---------------
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            164554 114 -    375362 CCAAGATCAATTCACTGCAACCTCGGCTCCCCATCAATGTTAGACTTCCTG----ATACTTCCA-TTCTATCATTCGAGTGTGTCCCAGCAAACAACATTCTCTTGCCAATTTTCTGAT---------------
i saiBol1.JH378348         C 0 I 11861
s aotNan1.NW_018494050v1      103048 113 -    285216 CCAAGATCGACTCACCCCAACCTTGGCTCCCCATC-ATGTTAGACTTCCTG----ATACTTCCA-TTCTATCATTTGAGTGTGTCCCGGCAAACAACATTCTCTTGCCAATTTTCTGAT---------------
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1488288 119 -   2232465 TCACTATCAATCCGC-------------CTCCGTT-GTATTAGATCGCCTGGAGCATGCTTCCA-TTCTCTCACTTGAGTGCGTCCTGTCATACAACATTCTCTTTTAACTTTTCTTTTTGCAactttgcttag
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171341615 1843 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=208605.000000
s hg38.chr6_GL000254v2_alt     62334 39 +   4827813 tataactttctgtattcttttgactcttggaagcatgtt
s panTro5.chr6              29033194 39 + 175400573 tataactttctgtattcttttgactcttggaagcatgtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29277348 39 + 173848474 tataactttctgtattcttttgactcttggaagcatgtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5076048 39 +   6154872 tataactttctgtattcttttgactcttggaagcatgtt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29275147 39 + 172585720 tataatattctgtattcttttgactcttggaagcatgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28923918 39 - 170955103 tataatattctgtattcttttgactcttggaagcatgtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1901645 39 -   2996164 tataatattctgtattcttttgactcttggaagcatgtt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1786873 39 -   2157725 TATAATATTCTGTATTCTTTTGACTCTTGGAAGCATGTT
i cerAty1.NW_012001495v1   C 0 T 37763
s chlSab2.chr17             28241160 39 -  71996105 TACAATATTCCGTGTTCttttgactcttggaagcatgtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1909256 39 +   2316924 TATAATATTCTGTATTCTTTTGACTCTTGGAAGCATGTT
i manLeu1.NW_012104165v1   C 0 I 18678
s colAng1.NW_012115566v1     1783474 39 -   3067355 tataatattccgtattcttttgactcttggaagcatgtt
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1488407 34 -   2232465 tataactttctgcattcttttaactcttggaaac-----
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            164668 11861 -    375362 I
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171341615 1843 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=328761.000000
s hg38.chr6_GL000254v2_alt     62373 152 +   4827813 ggtgtttcacatagtcaaaaaataaaactgactcaagtgcgtgtgaaaataccttaaaattcaatacgaatagaggcaaattcaaatggcgttgtctatcgcttctcggccttttggctaagatcaagtgtaaaattgcattgtgaaacaat
s panTro5.chr6              29033233 152 + 175400573 ggtgtttcatatagtcaaaaaataaaACTGACTCAAGTGCGTGTGAAAATACCTTAAAATTCAATACGAGTAGAGGCAAATTCAAATGGCGTTGTCTatcgcttctcggccttttggctaggatcaagtgtaAaactgcattgtgaaacaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29277387 152 + 173848474 ggtgtttcatatagtcaaaaaataaaactgactcaagtgcatgtgaaaataccttaaaattcaatacgagtagaggcaaatTCAAATGGCGTTGTCTatcgcttctcggccttttggctaggatcaagtgtaAAACTGCATTGTGAAACAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5076087 152 +   6154872 ggtgtttcacatagtcaaaaaataaaACTGACTCAAGAGCGTGTGAAAACACGTTAAAATTCAATACGAATAGAGTCAAATTCAAATGGCGTTGTCTatcgcttctcggccttttggctaagatcaagtgtaAAATTGCATTGTGAAACAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29275186 101 + 172585720 --agtctcacatagtcataaaataaaactgactcaagtgcgtgtgaaaacaccctaaaattcaatacaaatagacgcaaat-------------------------------------------------taaaactgcattgtgaaacaat
i rheMac8.chr4             C 0 I 13
s macFas5.chr4              28923957 101 - 170955103 --agtctcacatagtcataaaataaaactgactcaagtgcgtgtgaaaacaccctaaaattcaatacaaatagacgcaaat-------------------------------------------------taaaactgcattgtgaaacaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1901684 101 -   2996164 --agtttcacatagtcataaaataaaactgactcaagtgtgtgtgaaaacaccctaaaattcaatacaaatagacgcaaat-------------------------------------------------taaaactgcattgtgaaacaat
i macNem1.NW_012011356v1   C 0 I 13
s chlSab2.chr17             28241199 101 -  71996105 --agtctcacatagtcaaaaaataaaactgactcaagtgtgtgtgaaaataccctaaaattcaatacaaatagacgcaaat-------------------------------------------------taaaactgcattgtgaaacaat
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1783513 101 -   3067355 --agtctcacatagtcaaaaaataaaactgactcaagtgtgtgtgaaaataccctaaaattcaatacaaatagacgcaaat-------------------------------------------------taaaactgcattgcgaaacaat
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1488441  97 -   2232465 ----ttttacatggtcaaaaaataaaactgacacaagtttgtgtgaaaataacctatacttcaatacaaatataaacaagt---------------------------------------------------ctactgcgtttcaaaagaat
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            164668 11861 -    375362 I
e aotNan1.NW_018494050v1      103161   0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171341615 1843 - 171630274 I
e manLeu1.NW_012104165v1     1909295 18678 +   2316924 I
e cerAty1.NW_012001495v1     1786912 37763 -   2157725 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=12676.000000
s hg38.chr6_GL000254v2_alt     62525 21 +   4827813 aacatactcctacttgaaaag
s panTro5.chr6              29033385 21 + 175400573 aacatactcctacttgaaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29277539 21 + 173848474 AACATACTCCTACTTgaaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5076239 21 +   6154872 AACATACTCCTACTTGAAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28924058 13 - 170955103 -acattaccccatt-------
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28241300 14 -  71996105 aatgtaaccccatt-------
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1783614 14 -   3067355 aacataaccccatt-------
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1488538 21 -   2232465 gatataatgacaataaagaac
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            164668 11861 -    375362 I
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171341615 1843 - 171630274 I
e manLeu1.NW_012104165v1     1909295 18678 +   2316924 I
e cerAty1.NW_012001495v1     1786912 37763 -   2157725 T
e macNem1.NW_012011356v1     1901785 13 -   2996164 I
e rheMac8.chr4              29275287 13 + 172585720 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=118867.000000
s hg38.chr6_GL000254v2_alt     62546 37 +   4827813 gaaagaactgatctatgaaaatggtttatacag---tttg
s panTro5.chr6              29033406 37 + 175400573 gaaagaactgatctatgaaaatggtttatacag---tttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29277560 37 + 173848474 gaaagaactgatctatgaaaatggtttatacag---tttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5076260 37 +   6154872 GAAAGAACTGATCTATGAAAATGGTTTATACAG---TTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29275300 37 + 172585720 gaaataactgatttaagaaaacgctttacacag---ttcg
i rheMac8.chr4             I 13 C 0
s macFas5.chr4              28924071 37 - 170955103 gaaataactgatttaagaaaacgctttacacag---ttcg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1901798 37 -   2996164 gaaataactgatttaagaaaacgctttacacag---ttcg
i macNem1.NW_012011356v1   I 13 C 0
s chlSab2.chr17             28241314 37 -  71996105 gaaataactgatttaagaaaatgctttacacag---ttcg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1783628 37 -   3067355 gaaATAACTGATTTAAGAAAATGTTTTACACAG---TTCG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1488559 40 -   2232465 aaaagaactgatctaagaaaatggctaatacagtactttg
i otoGar3.GL873742         C 0 I 251
e saiBol1.JH378348            164668 11861 -    375362 I
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171341615 1843 - 171630274 I
e manLeu1.NW_012104165v1     1909295 18678 +   2316924 I
e cerAty1.NW_012001495v1     1786912 37763 -   2157725 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=780751.000000
s hg38.chr6_GL000254v2_alt     62583 249 +   4827813 ttgttctaattgtaagattaaaaagaattgcaaacaaatcttgaactc--tgtatcagggtta-tttttgtagagctagggctgtaagaattctgagattttgtgtgaattttaggattgggaaaatg-----------agtgtg----------tgtga--ccgggtg-tgttggaaccaggctgtcactgta---agagaaagaaggtaaagaatagtcctgttggtgttg-atgagaa-ttggaggcgtcagtatgaaattatacatatgtaatttta
s panTro5.chr6              29033443 248 + 175400573 ttgttctaattgtaagattaaaaagaattgcaaacaaatcttgaactc--tgtatcagggtta-tttttgtagagctagggctgtaagaattctgagattttgtgtgaattttaggattgggaaaatg-----------agtgtg----------tgtga--gcgggtg-tgttggaaccaggctgtcactgta---agagaaagaaggtaaagaatagtcctgttggtgttg-atg-gaa-ttggaggcatcagtatgaaattatacatatgtaatttta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29277597 248 + 173848474 ttgttctaattgtaagattaaaaagaattgcaaacaaatcttgaactc--tgtatcagggtta-tttttgtagagctagggctgtaagaattctgagattttgtgtgaattttaggattgggaaaatg-----------agtgtg----------tgtga--gcgggtg-tgttggaaccaggctgtcactgta---agagaaagaaggtaaagaatagtcctgttggtgttg-atg-gaa-ttggaggcatcagtatgaaattatacatatgtaatttta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5076297 249 +   6154872 TTGTTCTAATTTtaagattaaaaagaattgcaaacaaatcttgaactc--tgtatcagggtta-tttttgtagagctagggctgtaagaattctgagattttgtgtgaattttaggattgggaaaatg-----------agtgtg----------tgtga--gcgggtg-tgttggaaccaggctgtcactgta---agagaaagaaggtaaagaatagtcctgttggtgttg-atgggaa-ttggaggcatcagtatgaaattatgcatatgtaatttta
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29275337 242 + 172585720 ttatt-taattgtaagcacaaaaagaagaggaaagaaatcttaaactctatgtatgagggttattttttgtagagctaaagctgtaggaattctgagattttgtgtgaattttaggattgggaaaatg-----------agtgtg----------tgaga--gtgtgtgttgttggaaacaggctgtcactgta---agaaaaagaaggtaaagaacagtcctgttggtgttg-atgggaa-ttggaggcatcagtatgaaattatacata----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28924108 242 - 170955103 ttatt-taattgtaagcacaaaaagaagaggaaagaaatcttaaactctatgtatgagggttattttttgtagagctaaagctgtaggaattctgagattttgtgtgaattttaggattgggaaaatg-----------agtgtg----------tgaga--gtgtgtgttgttggaaacaggctgtcactgta---agaaaaagaaggtaaagaacagtcctgttggtgttg-atgggaa-ttggaggcatcagtatgaaattatacata----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1901835 242 -   2996164 ttatt-taattgtaagcacaaaaagaagaggaaagaaatcttaaactctatgtatgagggttattttttgtagagctaaagctgtaggaattctgagattttgtgtgaattttaggattgggaaaatg-----------agtgtg----------tgaga--gtgtgtgttgttggaaacaggctgtcactgta---agaaaaagaaggtaaagaatagtcctgttggtgttg-atgggaa-ttggaggcatcagtatgaaattatacata----------
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28241351 244 -  71996105 ttgtt-taattgtaagcacaaaaagaagaggaaagaaatcttaaactctatgtatgagggttattttttgtagagctaaagctgtaggaattctgagattttgtgtgaattttaggattgggaaaatg-----------agtgtg----------tgagagtgtgtgtgttgttggaaccaggctgtcactgta---agaaaaagaaggtaaagaatagtcctgttggtgtta-atgggaa-ttggaggcatcagtatgaaattatacata----------
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1783665 244 -   3067355 TTGTT-TAATTGtaagcacaaaaagaagaggaaagaaatcttaaattctatgtatgagggttattttttgtagagctaaagctgtaggaattctgagattttgtgtgaattttaggactgggaaaatg-----------agtgtg----------tgagagtgtgtgtgttgttggaaccaggttgtcactgta---agaaaaagaaggtaaagaatagtcctgttggagttg-atgggaa-ttggaggcatcagtatgaaattatacata----------
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1488850 276 -   2232465 ttgttctaattttaaagacaaaaagaatagttaacaaatcttaaactctaggtagcaggattattttttgtaatgctaaggttgtaacaa-tctgatactttgtgtgaattttaagaatgggaaaatgtgcatttgtgtagtgtgaaaatgagtatgtgt--gtatgtgttgttggaaccaggctgtcactgtggacaaagagggaaggtaaagaatagtcctgttagtgctgcacgggaatttagatgctttggtatgaaattatatatg--taattgta
i otoGar3.GL873742         I 251 T 10780
e saiBol1.JH378348            164668 11861 -    375362 I
e aotNan1.NW_018494050v1      103161   0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171341615 1843 - 171630274 I
e manLeu1.NW_012104165v1     1909295 18678 +   2316924 I
e cerAty1.NW_012001495v1     1786912 37763 -   2157725 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=1258689.000000
s hg38.chr6_GL000254v2_alt     62832 464 +   4827813 taggctgggcgcagtggctcacgtttgtaatctcaacactttggcaggccaagacgggcagctcac----ttgaggtcaggagttcgagaacagcctggccaacatggtgaaacccccgtctctactaaaaatacaaaaattagccggatgtggttgtgcgtgcctgtagtcccagctactcggaagtctgaggcaggagaatcgcttgaactcaggaggcagacgttgcagtg-agccaagatcctgccaccgcactctggcctgggtgac----ttagactttgtctcaaaaaaaaaaaaa--------a-------gtaaaatttccctgcagatctgtctgctaactgggcctggaagaaatacctcagaaacaataagcaaagataa--caatattttgattcacaaataccattccctactaaaaggcaccagagatactaatagaaagtagctACTAGTGTCAACTACACTGACTCCAGGACt
s panTro5.chr6              29033691 465 + 175400573 taggctgggcgcagtggctcacgtttgtaatctcaacactttggcaggccaagacgggcagctcac----ttgaggtcaggagttcgagaacagcccggccaacatggtgaaacccccgtctctactaaaaatacaaaaattagccggatgtggttgtgcgtgtctgtagtcccagctactcggaagtctgaggcaggagaatcgcttgaactcaggaggcagacgttgcagtg-agccaagatcctgccaccgcactctggcctgggtgac----ttagactttgtctcaaaaaaaaaaaaa--------a------ggtaaaatttccctgcagatctgtctgctaactgggcctggaagaaatacctcagaaacaataagcaaagataa--cagtattttgattcacaaataccattccctactaaaaggcaccagagatactaacagaaagtagctACTAGTGTCAACTACACCGACTCCAGGACt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29277845 462 + 173848474 taggctgggcgcagtggctcacgtttgtaatctcaacactttggcaggccaagacgggcagctcac----ttgaggtcaggagttcgagaacagcccggccaacatggtgaaacccccgtctctactaaaaatacaaaaattagccggatgtggttgtgcgtgcctgtagtcccagctactcggaagtctgaggcaggagaatcgcttgaactcaggaggcagacgttgcagtg-agccaagatcctgccaccgcactctggcctgggtgac----ttagactttgtctcaaaaaaaaaaag-----------------gtaaaatttccctgcagatctgtctgctaactgggcctggaagaaatacctcagaaacaacaagcaaagataa--cagtattttgattcacaaataccattccctactaaaaggcaccagagatactaatagaaagtagctACTAGTGTCAACTACACTGACTCCAGGACt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5076546 466 +   6154872 taggctgggcgcagtggctcacgtttgtaatcccaacactttgggaggccgagaagggcagctcac----ttgaggtcaggagttcgagaacagcccggccaacatggtgaaacccccgtctctgctaaaaattcaaaaattagccggatgtggttgtgcgtgcctgtagtcccagctactcggaagtctgaggcaggagaatcgcttgaactcaggaggcagacgttgcagtg-agccaagatcctgccaccgcactctggcctgggtgac----ttagactttgtctcaaaaaaaaaaaaa--------a-----aagtaaaatttccctgcagatctgtctgctaactgggcctggaagaaatacctcagaaacaataagcaaagataa--caatattttgatttacaaataccattccctactaaaaggcaccagagatactaatagaaagtagctactagtgtcaactacactgactccaggact
i gorGor5.CYUI01015250v1   C 0 I 1307
s rheMac8.chr4              29275579 474 + 172585720 ---gccgggcgcagtggctcgcgctagtaatctcaacacttcgggaggctgagacgtgtggatcacttctttcaggtcagaaa-tcgagaacagcctggccaacatggcaaaa-ccccgtatctactaaaaatacaaaactttgccgggtgtgggggc-cgcacctgtagtcccagctattcgggaggctgaggcaggataatcgcttgaatttgggaggaggacgttgcagcgtagccaagatcgcgccactgcactc-agcctgggcgactgagtgagactctgtctcaagaaaaaaaaga--------aaaaaaaagcacattttccctacagatctgtctgctaactgggcctggaagaaatacctgagaaacaatgagc-aagataactctatattttgattttcaaataccattctctactaaaaggaaccagagatactaatagaaagtagctactattgtcaactacactgattccaggact
i rheMac8.chr4             C 0 T 81413
s macFas5.chr4              28924350 473 - 170955103 ---gccgggcgcagtggctcgcgctagtaatctcaacacttcgggaggctgagacgtgtggatcacttctttcaggtcagaaa-tcgagaacatcctggccaacatggcaaaa-ccccgtatctactaaaaatacaaaactttgccgggtgtgggggc-cgcacctgtagtcccagctattcgggaggctgaggcaggataatcgcttgaatttgggaggaggacgttgcagcg-agccaagatcgcgccactgcactc-agcctgggcgactgagtgagactctgtctcaagaaaaaaaaga--------aaaaaaaagcacattttccctacagatctgtctgctaactgggcctggaagaaatacctgagaaacaatgagc-aagataactctatattttgattttcaaataccattctctactaaaaggaaccagagatactaatagaaagtagctactattgtcaactacactgattccaggact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1902077 473 -   2996164 ---gccgggcgcagtggctcgcgctagtaatctcaacacttcgggaggctgagacgtgtggatcacttctttcaggtcagaaa-tcgagaacagcctggccaacatggcaaaa-ccccgtatctactaaaaatacaaaactttgccgggtgtgggggc-cgcgcctgtagtcccagctattcgggaggctgaggcaggataatcgcttgaatttgggaggaggacgttgcagcg-agccaagatcgcgccactgcactc-agcctgggcgactgagtgagactctgtctcaagaaaaaaaaga--------aaaaaaaagcacattttccctacagatctgtctgctaactgggcctggaagaaatacctgagaaacaatgagc-aagataactctatattttgattttcaaataccattctctactaaaaggaaccagagatactaatagaaagtagctactatagtcaactacactgattccaggact
i macNem1.NW_012011356v1   C 0 I 2175
s chlSab2.chr17             28241595 481 -  71996105 ---gccgggtgcagtgactcgcgctagtaatctcaacacttcgggaggctgagacgtgtggatcacttctttcaggtcagaaa-tcgagaacagcctggccaacatggcaaaa-ccccgtatctactaaaaagacaaaactttgccgggtgtgggggc-cgcgcctgtagtcccagctattcgggaggctgaggcaggataatcgcttgaattcgggagaaggacgttgcagcg-agccaagatcgcgcccctgcaccc-agcctgggcgactgagtgagactctgtctcaagagaaaaaagaaaaaagggaaaaaaaagtacattttccctacagatctgtctgctaactgggcctggaagaaatacctgagaaacaatgagc-aagataactctatattttgattttcaaataccgttctctactaaaaggaaccagagatactaatagaaagtagctaccattgtcaactacactgattccaggact
i chlSab2.chr17            C 0 I 17709
s colAng1.NW_012115566v1     1783909 476 -   3067355 ---gccgggcgcagtggctcgcgctggtaatctcaacacttcgggaggctgagacgtgtggatcacttctttcaggtcagaaa-tcgagaacagcctggccaacatggcaaaa-tcccgtatctactaaaaatacaaaactttgccgggtgtaggtgc-cgcgcctgtagtcccagctattcgggaggctgaggcaggataatcgcttgaattcgggaggaggacgttgcagcg-agccaagatcgcgccactgcactc-agtctgggcgac----tgagactctgtctcaagaaagagaaaa-aaaagaaaacaaaaagtacattttccctacagatctgtctgctaactgggcctcgaagaaatacctgagaaacaatgagc-aagataactctatattttgattttcaaataccattctctactaaaaggaaccagagatactaatagaaagtagctactattatcaactacactgattccaggact
i colAng1.NW_012115566v1   C 0 I 16344
e saiBol1.JH378348            164668 11861 -    375362 I
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161   0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171341615 1843 - 171630274 I
e manLeu1.NW_012104165v1     1909295 18678 +   2316924 I
e cerAty1.NW_012001495v1     1786912 37763 -   2157725 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=3282.000000
s hg38.chr6_GL000254v2_alt     63296 7 +   4827813 catgcca
s panTro5.chr6              29034156 7 + 175400573 catgcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29278307 7 + 173848474 catgcca
i panPan2.chr6             C 0 C 0
s macFas5.chr4              28924823 6 - 170955103 -gtgcca
i macFas5.chr4             C 0 I 16968
e saiBol1.JH378348            164668 11861 -    375362 I
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161 0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171341615 1843 - 171630274 I
e colAng1.NW_012115566v1     1784385 16344 -   3067355 I
e manLeu1.NW_012104165v1     1909295 18678 +   2316924 I
e chlSab2.chr17             28242076 17709 -  71996105 I
e cerAty1.NW_012001495v1     1786912 37763 -   2157725 T
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e rheMac8.chr4              29276053 81413 + 172585720 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I
e gorGor5.CYUI01015250v1     5077012 1307 +   6154872 I

a score=242142.000000
s hg38.chr6_GL000254v2_alt     63303 875 +   4827813 ctgcactacagcctgggcgacaaagcgagactctgtctcaaataaataaataaatatggaagatgggaagattttctttacagtggtatgccagctaataaatgtggaaagaaggataaaatttgcaaatccccattagaaaattagaaaatctggacaccatcagaatgctgataggtgcaggcaaaattataagtcaatgctaaaagtataggtaaaattttgatgaggatcaggatatttatatagtctcagagtatttctctagagcttacttattgattacaatgaggaagatgatacttttgcagggaagaaatagtagttacaaacttaaccaaatgatgaaagctaacttcactaataatggggaaaattggcatcacatgcttcttggtgtgatagaggataatatgattttttgtgacatttcttccaatttccataaacttaatcttaccatgagtaggacaaattaagaaatattccacaaaccactggcatatactcttcaaaaacattatcaaagttgtgaaagacacaattgagcaactgttctaaattaaaggagactaaagagtcaagacaattagattcatatgtgtctgtgaaatggatcctagcttgggagagaaatttctataaaagattgtattgatacaattagttaaatttttatagattgtatattagataatgctattttatcaatgttaagtttactgaatttgataattgtgctgtgttaaggaactgatcttgttttaagaaatacacattgatgaatttagggattaaaaagatataatgtctgaaaatc---atcaaatagtttagagaaataaTCTTTGAGATCTCTCTCTGTGTCTCTCTCCata
s panTro5.chr6              29034163 878 + 175400573 ctgcactacagcctgggcgacaaagcgagactctgtctcaaataaataaataaatatggaagatgggaagattttctttacagtggtatgccagctaataaatgtggaaagaaggataaaatttgcaaatccccattagaaaattagaaaatctggacaccatcagaatgctgataggtgcaggcaaaattataagtcaatgctaaaagtataggtaaatttttgatgaggatcaggatatttatatagtctcagagtatttctctagagcttacttattgattacgatgaggaagatgatacttttgcagggaagaaatagtagttacaaacttaaccaaatgatgaaagctaacttcactaataatggggaaaattggcatcacatgcttcttggtgtgatagaggataatatgattttttgtgacatttcttccaatttccataaacttaatcttaccatgagtaggacaaattaagaaatattccacaaaccactgacatacactcttcaaaaacattatcaaagttgtgaaagacacaattgagcaactgttctaaattaaaggaggctaaagagtcaagacaattagattcatatgtatctgtgaaatggctcctagcttgggagagaaatttctataaaagattgtattgatacaattagttacatttttatagattgtatgttagataatgctattttatcaatgttaagtttactgaatttgataattgtgctgtgttaaggaactgatcttgttttaagaaatacacattgatgaatttagggattaaaaagatataatgtctgaaaatcattatcaaatagtttagagaaataaTCTTTGAGAtctctctctgtctctctctcCata
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29278314 878 + 173848474 ctgcactacagcctgggcgacaaagcgagactctgtctcaaataaataaataaatatggaagatgggaagattttctttacagtggtatgccagctaataaatgtggaaagaaggataaaatttgcaaatccccattagaaaattagaaaatctggacaccatcagaatgctgataggtgcaggcaaaattataagtcaatgctaaaagtataggtaaaattttgatgaggatcaggatatttatatagtctcagagtatttctctagagcttacttattgattacgatgaggaagatgatacttttgcagggaagaaatagtaattacaaacttaaccaaatgatgaaagctaacttcactaataatggggaaaattggcatcacatgcttcttggtgtgatagaggataatatgattttttgtgacatttcttccaatttccataaacttaatcttaccatgagtaggacaaattaagaaatattccacaaaccactgacatacactcttcaaaaacattatcaaagttgtgaaagacacaattgagcaactgttctaaattaaaggagactaaagagtcaagacaattagattcatatgtgtctgtgaaatggctcctagcttgggagagaaatttctataaaagattgtattgatacaattagttacatttttatagattgtatgttagataatgctattttatcaatgttaagtttactgaatttgataattgtgctgtgttaaggaactgatcttgttttaagaaatacacattgatgaatttagggattaaaaagatataatgtctgaaaatcattatcaaatagtttagagaaataaTCTTTGAGAtctctctctgtctctctctcCata
i panPan2.chr6             C 0 C 0
e saiBol1.JH378348            164668 11861 -    375362 I
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161   0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171341615 1843 - 171630274 I
e colAng1.NW_012115566v1     1784385 16344 -   3067355 I
e manLeu1.NW_012104165v1     1909295 18678 +   2316924 I
e chlSab2.chr17             28242076 17709 -  71996105 I
e cerAty1.NW_012001495v1     1786912 37763 -   2157725 T
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e macFas5.chr4              28924829 16968 - 170955103 I
e rheMac8.chr4              29276053 81413 + 172585720 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I
e gorGor5.CYUI01015250v1     5077012 1307 +   6154872 I

a score=1210.000000
s hg38.chr6_GL000254v2_alt     64178 27 +   4827813 tatatatatggagtgtatatatatata
s panTro5.chr6              29035041 20 + 175400573 tatatata-------tatatatatata
i panTro5.chr6             C 0 C 0
e saiBol1.JH378348            164668 11861 -    375362 I
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171341615 1843 - 171630274 I
e colAng1.NW_012115566v1     1784385 16344 -   3067355 I
e manLeu1.NW_012104165v1     1909295 18678 +   2316924 I
e chlSab2.chr17             28242076 17709 -  71996105 I
e cerAty1.NW_012001495v1     1786912 37763 -   2157725 T
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e macFas5.chr4              28924829 16968 - 170955103 I
e rheMac8.chr4              29276053 81413 + 172585720 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I
e gorGor5.CYUI01015250v1     5077012 1307 +   6154872 I
e panPan2.chr6              29279192  0 + 173848474 C

a score=0.000000
s hg38.chr6_GL000254v2_alt     64205 224 +   4827813 tatatatatatatatatatggagtatatatatatatatatatatggagtatatatatatatggagtatatatatatatggagtatatatatatatatggagtatatatatatatatggagtatatatatatatatggagtatatatatatatatggagtatatatatatatatggagtatatatatatatggagtatatatgtatatatatatggagtatatat
e saiBol1.JH378348            164668 11861 -    375362 I
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161   0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171341615 1843 - 171630274 I
e colAng1.NW_012115566v1     1784385 16344 -   3067355 I
e manLeu1.NW_012104165v1     1909295 18678 +   2316924 I
e chlSab2.chr17             28242076 17709 -  71996105 I
e cerAty1.NW_012001495v1     1786912 37763 -   2157725 T
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e macFas5.chr4              28924829 16968 - 170955103 I
e rheMac8.chr4              29276053 81413 + 172585720 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I
e gorGor5.CYUI01015250v1     5077012 1307 +   6154872 I
e panPan2.chr6              29279192   0 + 173848474 C
e panTro5.chr6              29035061   0 + 175400573 C

a score=897.000000
s hg38.chr6_GL000254v2_alt     64429 52 +   4827813 atatatggagtatatatgtatatatatatggagtatatatatatatatggag
s macFas5.chr4              28941797 42 - 170955103 atatataga-taaatatatatacacacat-----atacacacacacat----
i macFas5.chr4             I 16968 C 0
e saiBol1.JH378348            164668 11861 -    375362 I
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171341615 1843 - 171630274 I
e colAng1.NW_012115566v1     1784385 16344 -   3067355 I
e manLeu1.NW_012104165v1     1909295 18678 +   2316924 I
e chlSab2.chr17             28242076 17709 -  71996105 I
e cerAty1.NW_012001495v1     1786912 37763 -   2157725 T
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e rheMac8.chr4              29276053 81413 + 172585720 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I
e gorGor5.CYUI01015250v1     5077012 1307 +   6154872 I
e panPan2.chr6              29279192  0 + 173848474 C
e panTro5.chr6              29035061  0 + 175400573 C

a score=91.000000
s hg38.chr6_GL000254v2_alt     64481 1 +   4827813 t
s gorGor5.CYUI01015250v1     5078319 1 +   6154872 t
i gorGor5.CYUI01015250v1   I 1307 C 0
e saiBol1.JH378348            164668 11861 -    375362 I
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161 0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171341615 1843 - 171630274 I
e colAng1.NW_012115566v1     1784385 16344 -   3067355 I
e manLeu1.NW_012104165v1     1909295 18678 +   2316924 I
e chlSab2.chr17             28242076 17709 -  71996105 I
e cerAty1.NW_012001495v1     1786912 37763 -   2157725 T
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e macFas5.chr4              28941839 0 - 170955103 C
e rheMac8.chr4              29276053 81413 + 172585720 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I
e panPan2.chr6              29279192 0 + 173848474 C
e panTro5.chr6              29035061 0 + 175400573 C

a score=4173.000000
s hg38.chr6_GL000254v2_alt     64482 20 +   4827813 atatatatatatatatggag
s gorGor5.CYUI01015250v1     5078320 19 +   6154872 atatatatatatatatata-
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28941839 16 - 170955103 acacacactcatacac----
i macFas5.chr4             C 0 C 0
s calJac3.chr4             171343458 17 - 171630274 ATATCTATTTATACATC---
i calJac3.chr4             I 1843 C 0
s saiBol1.JH378348            176529 17 -    375362 ATATATATTTATATATC---
i saiBol1.JH378348         I 11861 C 0
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e colAng1.NW_012115566v1     1784385 16344 -   3067355 I
e manLeu1.NW_012104165v1     1909295 18678 +   2316924 I
e chlSab2.chr17             28242076 17709 -  71996105 I
e cerAty1.NW_012001495v1     1786912 37763 -   2157725 T
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e rheMac8.chr4              29276053 81413 + 172585720 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I
e panPan2.chr6              29279192  0 + 173848474 C
e panTro5.chr6              29035061  0 + 175400573 C

a score=4988.000000
s hg38.chr6_GL000254v2_alt     64502 5 +   4827813 tatat
s panTro5.chr6              29035061 5 + 175400573 tatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29279192 5 + 173848474 tatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5078339 5 +   6154872 tatat
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28941855 4 - 170955103 -acac
i macFas5.chr4             C 0 C 0
s calJac3.chr4             171343475 5 - 171630274 CACAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            176546 5 -    375362 CACAC
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161 0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e colAng1.NW_012115566v1     1784385 16344 -   3067355 I
e manLeu1.NW_012104165v1     1909295 18678 +   2316924 I
e chlSab2.chr17             28242076 17709 -  71996105 I
e cerAty1.NW_012001495v1     1786912 37763 -   2157725 T
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e rheMac8.chr4              29276053 81413 + 172585720 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=6586.000000
s hg38.chr6_GL000254v2_alt     64507 4 +   4827813 atat
s panTro5.chr6              29035066 4 + 175400573 atat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29279197 4 + 173848474 atat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5078344 4 +   6154872 atat
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28941859 4 - 170955103 acac
i macFas5.chr4             C 0 C 0
s colAng1.NW_012115566v1     1800729 4 -   3067355 atac
i colAng1.NW_012115566v1   I 16344 C 0
s calJac3.chr4             171343480 4 - 171630274 ACAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            176551 4 -    375362 ACAT
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161 0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e manLeu1.NW_012104165v1     1909295 18678 +   2316924 I
e chlSab2.chr17             28242076 17709 -  71996105 I
e cerAty1.NW_012001495v1     1786912 37763 -   2157725 T
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e rheMac8.chr4              29276053 81413 + 172585720 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=157190.000000
s hg38.chr6_GL000254v2_alt     64511 46 +   4827813 atatatatTCCATTGTTGCTGATTGTTTGGTTG-----------AAGAGGCAAGATG
s panTro5.chr6              29035070 46 + 175400573 atatatatTCCATTGTTGCTGATTGTTTGGTTG-----------AAGAGGCAAGATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29279201 46 + 173848474 atatatatTCCATTGTTGCTGATTGTTTGGTTG-----------AAGAGGCAAGATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5078348 45 +   6154872 atatatatT-CATTGTTGCTGATTGTTTGGTTG-----------AAGAGGCAAGATG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28941863 57 - 170955103 atatacaTTCCACTGTTGCTGCTTGTTTGGTTGTTGAGGTAAGGAAGAGGCAAGATA
i macFas5.chr4             C 0 T 58783
s chlSab2.chr17             28259785 57 -  71996105 aTATAGATTCCACTGTTGCTGATTGTTTGGTTGTTGAGATGAGGAAGAGGCAAGATA
i chlSab2.chr17            I 17709 C 0
s manLeu1.NW_012104165v1     1927973 57 +   2316924 aTATAGATTCCACTGTTGCTGATTGTTTGGTTGTTGAGGTGAGGAAGAGGCAAGATA
i manLeu1.NW_012104165v1   I 18678 C 0
s colAng1.NW_012115566v1     1800733 53 -   3067355 aTATAGATTCCACTGTTGCTGATTGTTTGGTTGTTGAGGT----AAGAGGCAAGATA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171343484 57 - 171630274 GTATATATTTCACTGCTATTGATTGTTTGGCTGTTGAGGTGAGGAAGAGGCAACATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            176555 57 -    375362 GTATATATTTCACTGCTATTGATTGTTTGGTTGTTGAGGTGAGGAAGAGGCAAGATG
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e cerAty1.NW_012001495v1     1786912 37763 -   2157725 T
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e rheMac8.chr4              29276053 81413 + 172585720 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=3321.000000
s hg38.chr6_GL000254v2_alt     64557 1 +   4827813 G
s panTro5.chr6              29035116 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29279247 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5078393 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28883137 1 - 170955103 A
i macFas5.chr4             T 58783 C 0
s chlSab2.chr17             28259842 1 -  71996105 G
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012104165v1     1928030 1 +   2316924 G
i manLeu1.NW_012104165v1   C 0 T 63861
s colAng1.NW_012115566v1     1800786 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 T 68344
s calJac3.chr4             171343541 1 - 171630274 G
i calJac3.chr4             C 0 I 3
s saiBol1.JH378348            176612 1 -    375362 G
i saiBol1.JH378348         C 0 I 3
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161 0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e cerAty1.NW_012001495v1     1786912 37763 -   2157725 T
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e rheMac8.chr4              29276053 81413 + 172585720 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=499625.000000
s hg38.chr6_GL000254v2_alt     64558 107 +   4827813 TCTGAAATGATCCCAAGATGTGGACAATATGTGCTTCTCATGTGGTTCCCATTCCATTTTAAATGTTTCCAGGC-------AGAAACAAAGATACAAATTTCTCAATTTGTATT
s panTro5.chr6              29035117 107 + 175400573 TCTGAAATGATCCCAAGATGTGGACAATATGTGCTTCTCATGTGGTTCCCATTCCATTTTAAATGTTTCCAGGC-------AGAAACAAAGATACAAATTTCTCAATTTGTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29279248 107 + 173848474 TCTGAAATGATCCCAAGATGTGGACAATATGTGCTTCTCATGTGGTTCCCATTCCATTTTAAATGTTTCCAGGC-------AGAAACAAAGATACAAATTTCTCAATTTGTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5078394 107 +   6154872 TCTGAAATGATCCCAAGATGTGGACAATATTTGCTTCTCATGTGGTTCCTATTCCATTTTAAATGTTTCCAGGC-------AGAAACAAAGATACACATTTCTCAATTTGTATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29194640 107 + 172585720 TCTGAAATTATTCCAAGATTTGAACAATATACACTTCTCAGATGGTTCCCATTTCATTTTAAATGTTGCTAGGC-------AGAGACAAAGATACAAATTTCTCAATTTGTATT
i rheMac8.chr4             T 81413 C 0
s macFas5.chr4              28883138 107 - 170955103 TCTGAAATTATTCCAAGATTTGAACAATATACACTTCTCAGATGGTTCCCATTTCATTTTAAATGTTGCTAGGC-------AGAGACAAAGATACAAATTTCTCAATTTGTATT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1749149 107 -   2157725 TCTGAAATTATTCCAAGATTTGAACAATATACACTTCTCAGATGGTTCCCATTTCATTTTAAATGTTGCTAGGC-------AGAGACAAAGATACAAATTTCTCAATTTGTATT
i cerAty1.NW_012001495v1   T 37763 C 0
s chlSab2.chr17             28259846 107 -  71996105 TCTGAAATGATGTCAAGATTTGGACAATATGTGTTTCTCAGATGGTTCCCATTCCATTTTAAATGTTGCTAGGC-------TGAGACAAAGACACAAATTCCCCAATTTTTATT
i chlSab2.chr17            I 3 T 30902
s manLeu1.NW_012104165v1     1864170 107 +   2316924 TCTGAAATTATTCCAAGATTTGAACAATATACACTTCTCAGATGGTTCCCATTTCATTTTAAATGTTGCTAGGC-------AGAGACAAAGATACAAATTTCTCAATTTGTATT
i manLeu1.NW_012104165v1   T 63861 C 0
s colAng1.NW_012115566v1     1732443 107 -   3067355 TCTGAAATTATTCCAAGATTTGAACAATATACGCTTCTCAGATGGTTCCCATTTCATTTTAAATGTTGCTAGGC-------AGAGACAAAGATACAAATTTCTCAATTTGTATT
i colAng1.NW_012115566v1   T 68344 C 0
s calJac3.chr4             171343545 111 - 171630274 TCTGAAATGATGTGGACATTTGGACAATATGTGCTTCTCAAGTGCTTCTCATTCCACTTTCCATGTTGCTGGGCCATTTGTCATGGCCCAG---CAAATTCCCCAATTTATACT
i calJac3.chr4             I 3 C 0
s saiBol1.JH378348            176616 107 -    375362 TCTAAAATGATGTGGAGACTTGGACAATATGTGCTTCTCAAGCTGTTCTCATTCCACTTTCCATGTTGCTGGGC-------CATGACAAAGATACAAATTCCCCAATTTATATT
i saiBol1.JH378348         I 3 C 0
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161   0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=99711.000000
s hg38.chr6_GL000254v2_alt     64665 29 +   4827813 CAAATCTAACAGGT--GTTTTATTCTATTTT
s panTro5.chr6              29035224 29 + 175400573 CAAATCTAACAGGT--GTTTTATTCTATTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29279355 29 + 173848474 CAAATCTAACAGGT--GTTTTATTCTATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5078501 29 +   6154872 CAAATCTAACAGGT--GTTTTATTCTATTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29194747 29 + 172585720 AGAACGTAGAAAGT--GTTTTATTCTATTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28883245 29 - 170955103 AGAACGTAGAAAGT--GTTTTATTCTATTTT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1749256 29 -   2157725 AGAACGTAGAAGGT--GTTTTATTCTATTTT
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     1864277 29 +   2316924 AGAACGTAGAAGGT--GTTTTATTCTATTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1732550 29 -   3067355 AGAACGTAGAAGGT--GTTTTATTCTATTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171343656 31 - 171630274 GGAATTTAGCAGGTGGgttttgttttgtttt
i calJac3.chr4             C 0 T 19616
s saiBol1.JH378348            176723 31 -    375362 GGAATTTAGCAGGTGGgttttgttttgtttt
i saiBol1.JH378348         C 0 T 22580
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e chlSab2.chr17             28259953 30902 -  71996105 T
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=143352.000000
s hg38.chr6_GL000254v2_alt     64694 48 +   4827813 CCTGTTCACACTCCCTGTTTGGGAGTCAATCAACTAAGGACATCTGAA
s panTro5.chr6              29035253 48 + 175400573 CCTGCTCACACTCCCTGTTTGGGAGTCAATCAACTAAGGACATCTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29279384 48 + 173848474 CCTGCTCACACTCCCTGTTTGGGAGTCAATCAACTAAGGACATCTGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5078530 48 +   6154872 CCTGCTCACACTCCCTGTTTGGGAGTCAATCAACTAAGGACATCTGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29194776 48 + 172585720 CCTTGTCACACTCCTTGCTTGTGAGTCAATCAACTAAAGACATCTGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28883274 48 - 170955103 CCTTGTCACACTCCTTGCTTGTGAGTCAATCAACTAAAGACATCTGAA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1749285 48 -   2157725 CCTTGTCACACTCCTTGCTTGTGAGTCAATCAACTAAAGACATCTGAA
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     1864306 48 +   2316924 CCTTGTCACACTCCTTGCTTGTGAGTCAATCAACTAAAGACATCTGAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1732579 48 -   3067355 CCTTGTCACACTCCTTGCTTGTGAGTCAATCAACTAAAGACATCTGAA
i colAng1.NW_012115566v1   C 0 I 38411
e saiBol1.JH378348            176754 22580 -    375362 T
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171343687 19616 - 171630274 T
e chlSab2.chr17             28259953 30902 -  71996105 T
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=6648.000000
s hg38.chr6_GL000254v2_alt     64742 4 +   4827813 GGAA
s panTro5.chr6              29035301 4 + 175400573 GGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29279432 4 + 173848474 GGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5078578 4 +   6154872 GGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29194824 4 + 172585720 AGAG
i rheMac8.chr4             C 0 I 28578
s macFas5.chr4              28883322 4 - 170955103 AGAG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1749333 4 -   2157725 AGAG
i cerAty1.NW_012001495v1   C 0 I 25411
s manLeu1.NW_012104165v1     1864354 4 +   2316924 AGAG
i manLeu1.NW_012104165v1   C 0 I 47954
e saiBol1.JH378348            176754 22580 -    375362 T
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161 0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171343687 19616 - 171630274 T
e colAng1.NW_012115566v1     1732627 38411 -   3067355 I
e chlSab2.chr17             28259953 30902 -  71996105 T
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=1146.000000
s hg38.chr6_GL000254v2_alt     64746 2 +   4827813 AC
s panTro5.chr6              29035305 2 + 175400573 AC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29279436 2 + 173848474 AC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5078582 2 +   6154872 AC
i gorGor5.CYUI01015250v1   C 0 C 0
e saiBol1.JH378348            176754 22580 -    375362 T
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161 0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171343687 19616 - 171630274 T
e colAng1.NW_012115566v1     1732627 38411 -   3067355 I
e manLeu1.NW_012104165v1     1864358 47954 +   2316924 I
e chlSab2.chr17             28259953 30902 -  71996105 T
e cerAty1.NW_012001495v1     1749337 25411 -   2157725 I
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e macFas5.chr4              28883326 0 - 170955103 C
e rheMac8.chr4              29194828 28578 + 172585720 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=73010.000000
s hg38.chr6_GL000254v2_alt     64748 89 +   4827813 AGAATTTAATTCTCAGAGTCAGGAGGTGATGAGAGACTGCTTTGGTAGGGAAAGTAATAGTAAATTTGTTCTTTCTTGGTTAAATAAAG
s panTro5.chr6              29035307 89 + 175400573 AGAATTTAATTCTCAGAGTCAGGAGGTGATGAGAGACTGCTTTGGTAGGGAAAGTAATAGTAAATTTGTTCTTTCTTGGTTAAATAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29279438 89 + 173848474 AGAATTTAATTCTCAGAGTCAGGAGGTGATGAGAGACTGCTTTGGTAGGGAAAGTAATAGTAAATTTGTTCTTTCTTGGTTAAATAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5078584 89 +   6154872 AGAATTTAATTCTCAGAGTCAGGAGGTGATGAGAGACTGCTTTGGTAGGGAAAGTAATAGTAAATTTGTTCTTTCTTGGTTAAATAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28883326 89 - 170955103 AGAATTTCTTTCTCAGAGTCAGGAAGTGATGAGGGGCTGCTGCGGTAGGGAAAGAAATGGTGAAGTTGTTCTTTTTTGgagaaaagaag
i macFas5.chr4             C 0 I 27887
e saiBol1.JH378348            176754 22580 -    375362 T
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171343687 19616 - 171630274 T
e colAng1.NW_012115566v1     1732627 38411 -   3067355 I
e manLeu1.NW_012104165v1     1864358 47954 +   2316924 I
e chlSab2.chr17             28259953 30902 -  71996105 T
e cerAty1.NW_012001495v1     1749337 25411 -   2157725 I
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e rheMac8.chr4              29194828 28578 + 172585720 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=692828.000000
s hg38.chr6_GL000254v2_alt     64837 1272 +   4827813 AAGAAAAAGAAAGAAGAGAGGGAGGCAGGGAAAGAAATagaagacataacaatcctaaatatgtatccaccaaacaggagagctgcaacatatgtaaagataaaaaaacagaactttaaaaaaaaa-tagacaaatccacaattactttggagacttcaaaacttctctcataatgattgatagaacaactaaacagaaaatcagcaagaatgttgaagaactaggccgggcgtggtggctcacacctgtaatcccagcactttgggaggccgaggcgggcgaatcatgaggtcaggagatcaagaccaccctggctaacacggtgaaaccccatctctactaaaaaatacaaaaaaattagccgggcgtggtggcgggtgcctgtagtcccagctactctggaggctgaggcaggagaatggcgtgaacccgggaggctgagcttgcagtgagccgagatcgcgccactgcactccagcctgggcaacagagcaagactctgcttcaaaaaaaaaaaa-gagtgttgaagaactcaaa-catcttcagccaccagaattcagttaacatttataaaacagtccacacaggaagagcagaacacactagtcaaatccacactgaatataggtaaaggtaaaacatatcctgggccataaaacaaacctcaacaaatttaaaagaattaactaatatggtataatccctgaccaaaatgaaattaaagtaaaaatcagtcacaaaaagacagaaaaa-tgtccaaacgcttggaaaatgaacaacacactactaaacagttcatacaacaaagagaaaaccttagtagatatcaaaaaataaggtagcatgaataaaaatgaaaatacaatatattaaaaattccaagatatcctaaaggagtgctgagagagaaatatacagcactaagtgcatacattagaaaagaaaaaagtcccaaatcagtcctctaagctcttacttgtagaaatcaggtgggaaaaagagcaaaataacccaaagcaaatagaagaaaggaaataataaaaaataaaagcagaaatcagtgaaatggaacacacgcacacacacacacacaaaaatagaaaaacaaacaaaaagctagttcctttcaaggatcaataaaagaagaactctagcaagatagaaattttcagcagagagatgacacagtttaccaacatcaggaataaaaagaggacatcactgtagactcagctgacatcaaaaggatgaAGGAggctgggaatggtggcc
s panTro5.chr6              29035396 1274 + 175400573 AAGAAAAAGAAAGAAGAGAGGGAGGCAGGGAAAGAAATagaagtcataacaatcctaaatatgtatccaccaaacaggagagctgcaacatatgtaaagagaaaaaaacagaactttaaaaaaaaaatagacaaatccacaattactttggagacttcaaaacttctctcataatgattgatagaacaactaaacagaaaatcagcaagaatgttgaagaactaggctgggcgtggtggctcacacctgtaatcccagcactttgggaggccgaggtgggcgaatcatgaggtcaggagatgaagaccaccctggctaacacggtgaaaccccatctctactaaaaaatacaaaaaaattagccgggcgtggtggcgggtgcctgtagtcccagctactctggaggctgaggcaggagaatggcgtgaacccgggaggctgagcttgcagtgagccgagatcgcgccactgcactccagcctgggcaacagagcaagactctgcttcaaaaaaaaaaaaagaatgttgaagaactcaaaacatcttcagccaccagaattcagttaacatttataaaacagtccacacaggaagagcagaacacactagtcaaatccacacggaatataggtaaaggtaaaacatatcctgggccataaaacaaacctcaacaaatttaaaagaattaactaatatggtataatccctgaccaaaatgaaattaaagtaaaaatcagtcacaaaaagacagaaaaaatgtccaaacgcttggaaaatgaacaacacactactaaacagttcataggacaaagagaaaaccttagtagatatcaaaaaataaggtagcgtgaataaaaatgaaaatacaatatattaaaaattccaagatatcctaaaggagtgctgagagagaaatatacagcactaagtgcatacattagaaaagaaaaaagtcccaaatcagtcctctaagctcttacttgtagaaatcaggtgggaaaaagagcaaaataacccaaagcaaatagaagaaaggaaataataaaaaataaaagcagaaatcagtgaaatggaacacacgcacacacacacaaa--aaaatagaaaaacaaacaaaaagctagttcctttcaaggatcaataaaagaagaactctagcaagatagaaattttcagcagagagatgacacagtttaccaacatcaggaataaaaagaggacatcactgtagactcagctgacatcaaaaggatgaAGGAggctgggaatggtggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29279527 1272 + 173848474 AAGAAAAAGAAAGAAGAGAGGGAGGCAGGGAAAGAAATagaagtcataacaatcctaaatatgtatccaccaaacaggagagctgcaacatatgtaaagagaaaaaaacagaactttaaaaaaaaa-tagacaaatccacaattactttggagacttcaaaacttctctcataatgattgatagaacaactaaacagaaaatcagcaagaatgttgaagaactaggctgggcgtggtggctcacacctgtaatcccagcactttgggaggccgaggtgggcgaatcatgaggtcaggagatgaagaccaccctggctaacacggtgaaaccccatctctactaaaaaatacaaaaaaattagccgggtgtggtggcgggtgcctgtagtcccagctactctggaggctgaggcaggagaatggcgtgaacccgggaggctgagcttgcagtgagccgagatcgcgccactgcactccagcctgggcaacagagcaagactctgcttcaaaaaaaaaaaaagaatgttgaagaactcaaaacatcttcagccaccagaattcagttaacatttataaaacagtccacacaggaagagcagaacacactagtcaaatccacacggaatataggtaaaggtaaaacatatcctgggccataaaacaaacctcaacaaatttaaaagaattaactaatatggtataatccctgaccaaaatgaaattaaagtaaaagtcagtcacaaaaagacagaaaaa-tgtccaaacgcttggaaaatgaacaacacactactaaacagttcataggacaaagagaaaaccttagtagatatcaaaaaataaggtagcttgaataaaaatgaaaatacaatatattaaaaattccaagatatcctaaaggagtgctgagagagaaatatacagcactaagttcatacattagaaaagaaaaaagtcccaaatcagtcctctaagctcttacttgtagaaatcaggtgggaaaaagagcaaaataacccaaagcaaatagaagaaaggaaataataaaaaataaaagcagaaatcagtgaaatggaacacacgcacacacacacaaa--aaaatagaaaaacaaacaaaaagctagttcctttcaaggatcaataaaagaagaactctagcaagatagaaattttcagcagagagatgacacagtttaccaacatcaggaataaaaagaggacatcactgtagactcagctgacatcaaaaggatgaAGGAggctgggaatggtggcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5078673 1271 +   6154872 AAGAAAAAGAAAGAAGAGAGGGAGGCAGGGAAAGAAATagaaggcataacaatcctaaatatgtatccaccaaacagcagagctgcaacatatgtaagagaaaaaaaacagaactttaaaaaaaaa-tagacaaatccacaattactttgcagacttcaaaacttctctcataatgattgatagaacaactaaacagaaaatcagcaagaatgttgaagaactaggccgggcgtggtggctcacacctgtaatcccagcactttgggaggccgaggcgggcgaatcatgaggtcaggagatcaagaccatcctggctaacacgatgaaaccccatctctactaaaaaatacagaaaaattagccgggcgtggtggcgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggctgagcttgcagtgagctgagatctcgccactgcactccagcctaggcaacagagcaagactctgtttcaaaaaaaaaaaa-gaatgttgaagaactcaaaacatcttcagccaccagaattcagttaacatttataaaacagtccacacaggaagagcagaacacacaagtcaaatccacacggaatataggtaaaggtaaaacacatcctgggtcataaaacaaacctcaacaaatttaaaagaattaactaatatggtataatccctgaccaaaatgaaattaaagtaaaaatcagtcacaaaaagacagaaaaa-tgtccaaacgcttggaaaatgaacaacacactactaaacagttcataggacaaagagaaaaccttagtagatatcaaaaaataagttagcatgaataaaaatgaaaatacaatatattaaaaattccaagatatcctaaaggagtgctgagagagaaatatacagcactaagtgcatacattagaaaagaaaaaagtcccaaatcagtcctctaagctcttacttgaagaaaccaggtaggaaaaagagcaaaataacccaaagcaaatagaagaaaggaaataataaaaaataaaagtagaaatcaatgaaatggaacacacgcacacacacacaca--caaatagaaaaacaaacaaaaagctagttcctttcaaggatcaataaaagaagaactctagcaagatagaaattttcagcagagagatgacacagtttaccaacatcaggaataaaaagaggacatcactgtagactcagctgacatcaaaatgatgaAGGAggctgggaatggtggcc
i gorGor5.CYUI01015250v1   C 0 C 0
e saiBol1.JH378348            176754 22580 -    375362 T
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161    0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171343687 19616 - 171630274 T
e colAng1.NW_012115566v1     1732627 38411 -   3067355 I
e manLeu1.NW_012104165v1     1864358 47954 +   2316924 I
e chlSab2.chr17             28259953 30902 -  71996105 T
e cerAty1.NW_012001495v1     1749337 25411 -   2157725 I
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e macFas5.chr4              28883415 27887 - 170955103 I
e rheMac8.chr4              29194828 28578 + 172585720 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=3010.000000
s hg38.chr6_GL000254v2_alt     66109 4 +   4827813 cacg
s panTro5.chr6              29036670 4 + 175400573 cacg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29280799 4 + 173848474 cacg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5079944 4 +   6154872 cacg
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28911302 4 - 170955103 cacc
i macFas5.chr4             I 27887 C 0
e saiBol1.JH378348            176754 22580 -    375362 T
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161 0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171343687 19616 - 171630274 T
e colAng1.NW_012115566v1     1732627 38411 -   3067355 I
e manLeu1.NW_012104165v1     1864358 47954 +   2316924 I
e chlSab2.chr17             28259953 30902 -  71996105 T
e cerAty1.NW_012001495v1     1749337 25411 -   2157725 I
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e rheMac8.chr4              29194828 28578 + 172585720 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=629423.000000
s hg38.chr6_GL000254v2_alt     66113 278 +   4827813 cctgtaatcccagcactttggga-ggccgaggtgggtagatcacttgaggtcaggagtttgagaccagcctgaccaatatgtcaaaaccccgtctctactaaaaa-acaaaaattagctgggcatggtggcaggcgcctgtgatcccagctactcaggagactgaggcaggagaatcgcttgaactcaataggcggaggttgcagtgagccaagattgcaccactgcacttcagcctgggtgacagagcaagactccctctcacaaaaaca-gaacaaaac
s panTro5.chr6              29036674 278 + 175400573 cctgtaatcccagcattttggga-ggccgaggtgggtagatcacttgaggtcaggagtttgagaccagcctgaccaatatgtcaaaaccctgtctctactaaaaa-acaaaaattagctgggcatggtggcaggcgcctgtaatcccagctactcaggagactgaggcaggagaatcgcttgaactcaataggcggaggttgcagtgagccaagattgcaccactgcacttcagcctgggtgacagagcaagactctctctcacaaaaaca-gaacaaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29280803 278 + 173848474 cctgtaatcccagcattttggga-ggccgaggtgggtagatcacttgaggtcaggagtttgagaccagcctgaccaatatgtcaaaaccctgtctctactaaaaa-acaaaaattagctgggcatggtggcaggcgcctgtaatcccagctactcaggagactgaggcaggagaatcgcttgaactcaataggcggaggttgcagtgagccaagattgcaccactgcacttcagcctgggtgacagagcaagactctctctcacaaaaaca-gaacaaaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5079948 279 +   6154872 cctgtaatcccagcactttgggagggccgaggtgggcagatcacttgaggtcaggagtttgagaccagcctgaccaatatgtcaaaaccccgtctctactaaaaa-acaaaaattagctgggcatggtgggaggcgcctgtgatcccagctactcaggagactgaggcatgagaatcgcttgaactcagtaggcggaggttgcagtgagccaagattgcaccactgcactccagcctgggtgacagagcaaggctccttctcacaaaaaca-gaacaaaac
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28911306 268 - 170955103 cctgtaatctcagcactttggga-ggctgaggtgggcagatcacttgaggtcaggagtttgagaccagcctgaccaacatgtcaaaaccctgtctctacgaaaaatacaaaaattagctgggcatggtggcaggcacctgtgactccagatactcaggagactgaggcaggagaaccacttgaacccgggaggcggaggttgcagtgagccaagatttcaccactgcactccagcctgggtgacagagaaagactccctctcaaaaaaa------------
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1774748 277 -   2157725 cctgtaatcccagcattttggga-ggctgaggtgggcagatcacttgaggtcaggagtttgagaccagcctgaccaacacgtcaaaaccctgtctctacgaaaaatacaaaaattagctgggcatggtggcaggtacctgtgattccagatactcacgagactgaggcaggagaaccacttgaa-ccgggaggcggaggttgcagtgagccaagatctcgccactgcactccagcctggctgacagagaaagactccctctcaaaaaaaca-aaacaaaa-
i cerAty1.NW_012001495v1   I 25411 C 0
s chlSab2.chr17             28229051 279 -  71996105 cctgtaatcccagcactttggga-ggctgaggtgggcagatcacttgaggtcaggagtttgagaccagcctgaccaacatgtcaaaaccctgtctctacgaaaaacacaaaaattagctgggcatggtggcaggcacctgtgattccagatactcaggagactgaggcaggagaaccacttgaacccgggaggcggaggttgcagtgagccaagatttcaccactgcactccagcctgggtgacagagcaagactccctctcaaaaacaaacaaacaaac-
i chlSab2.chr17            T 30902 C 0
s colAng1.NW_012115566v1     1771038 270 -   3067355 cctgtaatcccagcactttggga-ggctgaggtgggcagatcacttgaggtcaggagtttgagaccagcctgaccaacatgtcagaaccccgtctctacgaaaaatacaaaaattagctgggcatggtggcaggcacctgtgattccaaatactcaggagactgaggcaggagaaccacttgaacctgggaggtggaggttgcagtgagccaagatctcaccactgcactccagcctgggtgacagagaaagacttcctctcaaaaaaaca----------
i colAng1.NW_012115566v1   I 38411 C 0
e saiBol1.JH378348            176754 22580 -    375362 T
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161   0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171343687 19616 - 171630274 T
e manLeu1.NW_012104165v1     1864358 47954 +   2316924 I
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e rheMac8.chr4              29194828 28578 + 172585720 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=30042.000000
s hg38.chr6_GL000254v2_alt     66391 18 +   4827813 a-aaacaaaaacaaacaaa
s panTro5.chr6              29036952 18 + 175400573 a-aaacaaaaacaaacaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281081 18 + 173848474 a-aaacaaaaacaaacaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080227 18 +   6154872 a-aaacaaaaaCAAACGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223406 17 + 172585720 --aaaaaaaaaaaaaaaaa
i rheMac8.chr4             I 28578 I 1
s macFas5.chr4              28911574 15 - 170955103 ----aaaaaaaaaaaaaaa
i macFas5.chr4             C 0 I 1
s cerAty1.NW_012001495v1     1775025 13 -   2157725 ------acaaacaaacaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229330 19 -  71996105 aaacaaacaaacaaacaaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1771308 17 -   3067355 --aaacaaaaacaaacaaa
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            176754 22580 -    375362 T
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e calJac3.chr4             171343687 19616 - 171630274 T
e manLeu1.NW_012104165v1     1864358 47954 +   2316924 I
e macNem1.NW_012011356v1     1902550 2175 -   2996164 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=35987.000000
s hg38.chr6_GL000254v2_alt     66409 6 +   4827813 aaagaa
s panTro5.chr6              29036970 6 + 175400573 aaagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281099 6 + 173848474 aaagaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080245 6 +   6154872 AAAGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223424 6 + 172585720 aGAGAG
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              28911590 6 - 170955103 AGAGAG
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     1904725 6 -   2996164 AAAGAA
i macNem1.NW_012011356v1   I 2175 C 0
s cerAty1.NW_012001495v1     1775038 6 -   2157725 AAAGAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229349 6 -  71996105 AAAGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912312 6 +   2316924 AAAGAA
i manLeu1.NW_012104165v1   I 47954 C 0
s colAng1.NW_012115566v1     1771325 6 -   3067355 aaaGAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171324071 6 - 171630274 AAAGAG
i calJac3.chr4             T 19616 C 0
s saiBol1.JH378348            154174 6 -    375362 AAAGAG
i saiBol1.JH378348         T 22580 C 0
e otoGar3.GL873742           1489126 10780 -   2232465 T
e aotNan1.NW_018494050v1      103161 0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=162286.000000
s hg38.chr6_GL000254v2_alt     66415 27 +   4827813 ATGGTAAATCCAACCCCACCCCTGACA
s panTro5.chr6              29036976 27 + 175400573 ATGGTAAATCCAACCCCACCCCTGACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281105 27 + 173848474 ATGGTAAATCCAACCCCACCCCTGACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080251 27 +   6154872 ATGGTAAATCCAACCCCACCCCTGACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223430 27 + 172585720 ATGGTAAATCCAACCCCACCCCTGACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28911596 27 - 170955103 ATGGTAAATCCAACCCCACCCCTGACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1904731 27 -   2996164 ATGGTAAATGAAACCCTAGCCCTGACA
i macNem1.NW_012011356v1   C 0 T 15294
s cerAty1.NW_012001495v1     1775044 27 -   2157725 ATGGTAAATCCAACCCCACCCCTGACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229355 27 -  71996105 ATGGTAAATCCAACCCCACCCCTGACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912318 27 +   2316924 ATGGTAAATGAAACCCCAGCCCTGACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771331 27 -   3067355 ATGGTAAATCCAACCCCACCCCTGACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171324077 27 - 171630274 ATAAGAAAACAATCCTCTCCCCTGATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            154180 27 -    375362 ATAATAAAACAACCCTCTCCCCTGATG
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1478346 27 -   2232465 ATATCAAAACCACTGCCATTCCTGATA
i otoGar3.GL873742         T 10780 I 1
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=432819.000000
s hg38.chr6_GL000254v2_alt     66442 72 +   4827813 TAATGCAACTA-CAAACCCCACTGGCTGTCCTAC-GTGGTTTAAG-TTTTTGATTGAGAATAGGCAAGGAACCCC
s panTro5.chr6              29037003 73 + 175400573 TAATGCAACAAACAAACCCCACTGGCTGTCCTAC-GTGGTTTAAG-TTTTTGATTGAGAATAGGCAAGGAACCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281132 72 + 173848474 TAATGCAACTA-CAAACCCCACTGGCTGTCCTTC-GTGGTTTAAG-TTTTTGATTGAGAATAGGCAAGGAACCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080278 73 +   6154872 TAATGCAACTA-CAAACCCCACTGGCTTTCCTAC-GTGGTTTAAGTTTTTTGATTGAGAATAGGCAAGGAACCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223457 70 + 172585720 TAATGCAACTA-CAAACCTCACTGGCTTTCCCAC-GTGGTTTAAG---TTTGATTGAGAATAGGCAAGGAACCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28911623 70 - 170955103 TAATGCAACTA-CAAACCTCACTGGCTTTCCCAC-GTGGTTTAAG---TTTGATTGAGAATAGGCAAGGAACCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1889464 70 -   2996164 TAATGCAACTA-CAAACCTCACTGGCTTTCCCAC-GTGGTTTAAG---TTTGATTGAGAATAGGCAAGGAACCCC
i macNem1.NW_012011356v1   T 15294 C 0
s cerAty1.NW_012001495v1     1775071 72 -   2157725 TAATGCAACTA-CAAACCTCACTGGCTTTCTCAC-GTGGTTTAAG-TTTTTGATTGAGAATAGGCAAGGAACCCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229382 72 -  71996105 TAATGCAACTA-CAAACCCCACTGGCTTTCCCAC-GTGGTTTAAG-TTTTTGATTGAGAATAGGCAAGGAACCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912345 69 +   2316924 TAAGATGAATA-CAATACTCACTGGCTTTCCTA----GGTTTGAG-TTTTTGATTGAGAATAGATAGGGAACCCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771358 72 -   3067355 TAATGCAACTA-CAAACCTCACTGGCTTTCCCAC-GTGGTTTAAG-TTTTTGATTGAGAATAGGCAAGGAACCCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171324104 72 - 171630274 TAAGGCAAATA-TAAATCTTCCTGGCTTTCCTAG-GTGGTTCGAG-CTTTTTATTGAGAATAGTCAGGGAACCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            154207 72 -    375362 TAAGGCAAATA-CAAATCTTCCTGGCTTTCCTGG-GTGGTTTGAG-CTTTTTATTGAGAATAGTCAGAGAACCCC
i saiBol1.JH378348         C 0 T 19956
s otoGar3.GL873742           1478374 73 -   2232465 TAAGGCAAATA-CAGACCCTGGTCACTTCCTTTTGGCACTTTGAG-TCCTTGGCTAAGAATGGGCAAGGAAGCCC
i otoGar3.GL873742         I 1 C 0
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=201388.000000
s hg38.chr6_GL000254v2_alt     66514 38 +   4827813 AGGAAAAAATCTTCCCCCTCAGCAGCCACCTGATCCTG
s panTro5.chr6              29037076 38 + 175400573 AGGAAAAAATCTTCCCCCTCAGCAGCCGCCTGATCCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281204 38 + 173848474 AGGAAAAAATCTTCCCCCTCAGCAGCCGCCTGATCCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080351 38 +   6154872 AGGAACAAATCTTCCCCCTCAGCAGCCGCCTGATCCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223527 38 + 172585720 AGGAACAAATCTTGCCCCTCAGCTGGTGCCTGGTCCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28911693 38 - 170955103 AGGAACAAATCTTGCCCCTCAGCTGGTGCCTGGTCCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1889534 38 -   2996164 AGGAACAAATCTTGCCCCTCAGCTGGTGCCTGGTCCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775143 38 -   2157725 AGGAACAAATCTTGCCCCTCAGCTGGTGCCTGATCCTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229454 38 -  71996105 AGGAACAAATCTTGCCCCTCAGCTGGTGCCTGATCCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912414 38 +   2316924 AGGACCAACTCTTCCTCCTCAGCAGGTACCTGACCCTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771430 38 -   3067355 AGGAACAAATCTTGCCCCTCAGCTGGTGCCTAATCCTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171324176 38 - 171630274 AGGAGCAGCTCTTCCTCCTCAGCAGGTGCCTGGCTCTG
i calJac3.chr4             C 0 T 8587
s otoGar3.GL873742           1478447 38 -   2232465 TGGAGCAACTCTTCCTTCTCAACACACACCTGGAGCTG
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            154279 19956 -    375362 T
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=11027.000000
s hg38.chr6_GL000254v2_alt     66552 2 +   4827813 GG
s panTro5.chr6              29037114 2 + 175400573 GG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281242 2 + 173848474 GG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080389 2 +   6154872 GG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223565 2 + 172585720 GG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28911731 2 - 170955103 GG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1889572 2 -   2996164 GG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775181 2 -   2157725 GG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229492 2 -  71996105 GG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912452 2 +   2316924 GG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771468 2 -   3067355 GG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315627 1 - 171630274 -A
i calJac3.chr4             T 8587 I 1
s otoGar3.GL873742           1478485 2 -   2232465 AG
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            154279 19956 -    375362 T
e aotNan1.NW_018494050v1      103161 0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=102063.000000
s hg38.chr6_GL000254v2_alt     66554 17 +   4827813 ACCTCCTTCTTAAACTT
s panTro5.chr6              29037116 17 + 175400573 ACCTCCTTCTTAAACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281244 17 + 173848474 ACCTCCTTCTTAAACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080391 17 +   6154872 ACCTCCTTCTTAAACTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223567 17 + 172585720 ACCTCCTTCTTAAACCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28911733 17 - 170955103 ACCTCCTTCTTAAACCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1889574 17 -   2996164 ACCTCCTTCTTAAACCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775183 17 -   2157725 ACCTCCTTCTTAAACCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229494 17 -  71996105 ACCTCCTTCTTAAACCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912454 14 +   2316924 A---CCTTCTGAAACTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771470 17 -   3067355 ACCTCCTTCTTAAACCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315629 17 - 171630274 ACATCCTTCTGAAACCT
i calJac3.chr4             I 1 C 0
s saiBol1.JH378348            134323 17 -    375362 ACATGCTTCTAAAACCT
i saiBol1.JH378348         T 19956 C 0
s otoGar3.GL873742           1478487 15 -   2232465 --CATATCCTGAAACTT
i otoGar3.GL873742         C 0 I 98
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=78200.000000
s hg38.chr6_GL000254v2_alt     66571 14 +   4827813 CTAGAAcagtgctt
s panTro5.chr6              29037133 14 + 175400573 CTAGAAcagtgctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281261 14 + 173848474 CTAGAAcagtgctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080408 14 +   6154872 CTAGAAGagtgctt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223584 14 + 172585720 CTAGAAcagtgctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28911750 14 - 170955103 CTAGAAcagtgctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1889591 14 -   2996164 CTAGAAcagtgctt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775200 14 -   2157725 CTAGAAcagtgctt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229511 14 -  71996105 CTAGAAcagtgctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912468 14 +   2316924 CTAGAGcagtgctt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771487 14 -   3067355 CTAGAGcagtgctt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315646 13 - 171630274 CTAGATcagtgct-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134340 13 -    375362 CTAAATCACTgct-
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1478502 98 -   2232465 I
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e cebCap1.NW_016108108v1      165962 28038 -    373274 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=649796.000000
s hg38.chr6_GL000254v2_alt     66585 87 +   4827813 ctcaaactttagcatcagagtcacttgagggcttattcaaacacaagaggctgagccccatgctcagcagttctgattcaatagatc
s panTro5.chr6              29037147 87 + 175400573 ctcaaactttagcatcagagtcacttgagggcttattcaaacacaagaggctgagccccatgctcagcagttctgattcaatagatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281275 87 + 173848474 ctcaaactttagcatcagagtcacttgagggcttattcaaacacaagaggctgagccccatgctcagcagttctgattcaatagatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080422 87 +   6154872 ctcaaactttagcatcagagtcacttgagggcttattcaaacacaagaggctgagccccatgttcagcagttctgattcaatagatc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223598 87 + 172585720 ctcaaactttaacatcagagtcacttgagggcttattcaaacacaggagactgagccccacactcagcagttctgattcagtagatc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28911764 87 - 170955103 ctcaaactttaacatcagagtcacttgagggcttattcaaacacaggagactgagccccacactcagcagttctgattcactagatc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1889605 87 -   2996164 ctcaaactttaacatcagagtcacttgagggcttattcaaacacaggagactgagccccacactcagcagttctgattcaatagatc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775214 87 -   2157725 ctcaaactttagcatcagagtcacttgagggcttattcaaacacaggagactgagccccacactcagcaattctgattcaatagatc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229525 87 -  71996105 ctcaaactttaacatcagagtcacttgagggcttattcaaacacgggagactgagcgccacactcagcagttctgattcaatagatc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912482 87 +   2316924 cgcaaactttagcatcagagtcgcttgagggcttattcaaacacaggaggctgagccccatactcagcagttctgattcaacagacc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771501 86 -   3067355 ctcaaactttaacatcagagtcacttgagggcttattcaaacacaggagactgagc-ccacactcagcagttctgattcaatagacc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315659 87 - 171630274 ctcaaactgcagcatcagagtcacttgagggcttattcaaacacaggtggctgggccccaccctctgcaattctgactccatagatc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134353 87 -    375362 ctcaaacttcagcgtcagagtcacttgagggcttattcaaacacaggtggctgggccccattctcagcaattctgattcgatacatc
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      137924 87 -    373274 ctcaaacttcagcatcagagacacttgagggcttattcaaacacaggtggctgggccccacccttagcaattctgattcaatacatc
i cebCap1.NW_016108108v1   T 28038 C 0
e otoGar3.GL873742           1478502 98 -   2232465 I
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=491221.000000
s hg38.chr6_GL000254v2_alt     66672 64 +   4827813 tgaggttaggcctggaatttagcattCTGCTTGCAGCACCCTAATT-CCCCACCCCTTGCTCTCC
s panTro5.chr6              29037234 64 + 175400573 tgaggttaggcctggaatttagcattCTGCTTGCGGCATCCTAATT-CCCCACCCCTTGCTCTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281362 64 + 173848474 tgaggttaggcctggaatttagcattCTGCTTGCGGCATCCTAATT-CCCCACCCCTTGCTCTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080509 63 +   6154872 tgaggttaggcctggaatttagcattCTGCTTGCAGCACCCTAATT-CCCCA-CCCTTGCTCTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223685 64 + 172585720 tgaggttgggcctggaatttagcattCTGCTTGCAGCACCCTAAAC-CACCACCCCTTGCTCTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28911851 64 - 170955103 tgaggttgggcctggaatttagcattCTGCTTGCAGCACCCTAAAC-CACCACCCCTTGCTCTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1889692 64 -   2996164 tgaggttgggcctggaatttagcattCTGCTTGCAGCACCCTAAAC-CACCACCCCTTGCTCTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775301 64 -   2157725 tgaggttgggcctggaatttagcattCTGCTTGCAGCACCCTAATT-TCCCACCCCTTGCTCTCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229612 64 -  71996105 tgaggttgggcctggaatttagcattCTGCTTGCAGCACCCTAATT-CACCACTCCTTGCTCTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912569 64 +   2316924 taaggttgggcctgaaatttATTATTCTGCTTGCAGCACCCAAATC-CCCCACCCCTTGCTCTCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771587 64 -   3067355 tgaggttggccctggaatttagcattCTGCTTGCAGCACCCTAATT-CACCACCCCTTGCTCTCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315746 64 - 171630274 tgcggtggggcctggaatttggcattcccaTGGTAGCACCCTAATC-CCTCACCCCTTGCTCTCC
i calJac3.chr4             C 0 I 63
s saiBol1.JH378348            134440 64 -    375362 tgctgtggggcctggaatttggcattccGCTGGTAACACCCTCATC-CCTCGCCCCTTACTCTCC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      138011 64 -    373274 tgcggtggggcctggaatttggcattccGCTGATAACACCCTCATC-CCTCACCCCTTGCTCTCC
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1478600 65 -   2232465 taaagttgggtctggaatttggcatttTGCTCACAGTACCCTAATCTCTCCATTCCTTACTTTCC
i otoGar3.GL873742         I 98 C 0
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=268095.000000
s hg38.chr6_GL000254v2_alt     66736 38 +   4827813 TGTGCAGTGTCCGCTGTGGCTGACATGCCGCTGTTTGC---------
s panTro5.chr6              29037298 38 + 175400573 TGTGCAGTGTCCGCTGTGGCTGACATGCCACTGTTTGC---------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281426 38 + 173848474 TGTGCAGTGTCCGCTGTGGCTGACATGCCACTGTTTGC---------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080572 38 +   6154872 TGTACAGTGTCCGCTGCGGCTGACATGCCACTGTTTGC---------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223749 38 + 172585720 CATGCAGTGTCCACTGTGACTGGCATGCCACTGTTTGC---------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28911915 38 - 170955103 CATGCAGTGTCCACTGTGACTGGCATGCCACTGTTTGC---------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1889756 38 -   2996164 CATGCAGTGTCCACTGTGACTGGCATGCCACTGTTTGC---------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775365 38 -   2157725 CATGCAGTGTCCACTGTGACTGGCATGCCACTGTTTGC---------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229676 38 -  71996105 CATGCAGTGTCCACTGTGACTGGCATGCCACTGTTTGC---------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912633 38 +   2316924 TGTGCAGTGTCCACTGTGGCTAACATGCCACTGTTTGC---------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771651 38 -   3067355 CATGCAGTGTCCACTGTGACTGGCATGCCACTGTTTGC---------
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            134504 38 -    375362 TGTGCAGTATCCACTGTGACTAACATGCCACTATTTGC---------
i saiBol1.JH378348         C 0 I 9
s cebCap1.NW_016108108v1      138075 38 -    373274 TGTGCATTGTCCACTGTGATTAACATACCACTATTTGC---------
i cebCap1.NW_016108108v1   C 0 I 99
s otoGar3.GL873742           1478665 47 -   2232465 TGTGCAGTGTCCACTCTGGCTAACATGCCACTGTTTGTTTAAAGTGC
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e calJac3.chr4             171315810 63 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=121159.000000
s hg38.chr6_GL000254v2_alt     66774 19 +   4827813 CTGGAGAGAACCAATAGAT
s panTro5.chr6              29037336 19 + 175400573 CTGGAGAGAACCAATAGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281464 19 + 173848474 CTGGAGAGAACCAATAGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080610 19 +   6154872 CTGGAGAGAACCAATAGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223787 19 + 172585720 CTGGAGAGAACCAATGGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28911953 19 - 170955103 CTGGAGAGAACCAATGGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1889794 19 -   2996164 CTGGAGAGAACCAATGGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775403 19 -   2157725 CTGGACAGAACCAATGGAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229714 19 -  71996105 CTGGAGAGAACCAATGGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912671 19 +   2316924 CTGGAGAAAACCAATGGAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771689 19 -   3067355 CTGGAGAGAACCAATGGAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            134551 19 -    375362 CTGGAGAGGACCAGTGCAT
i saiBol1.JH378348         I 9 C 0
s otoGar3.GL873742           1478712 19 -   2232465 CTGAAGAGAACAAGTGGat
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e cebCap1.NW_016108108v1      138113 99 -    373274 I
e calJac3.chr4             171315810 63 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=3971.000000
s hg38.chr6_GL000254v2_alt     66793 1 +   4827813 G
s panTro5.chr6              29037355 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281483 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080629 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223806 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28911972 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1889813 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775422 1 -   2157725 G
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229733 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912690 1 +   2316924 A
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771708 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            134570 1 -    375362 A
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1478731 0 -   2232465 C
e aotNan1.NW_018494050v1      103161 0 -    285216 C
e cebCap1.NW_016108108v1      138113 99 -    373274 I
e calJac3.chr4             171315810 63 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=20195.000000
s hg38.chr6_GL000254v2_alt     66794 4 +   4827813 CCAG
s panTro5.chr6              29037356 4 + 175400573 CCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281484 4 + 173848474 CCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080630 4 +   6154872 CCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223807 4 + 172585720 CCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28911973 4 - 170955103 CCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1889814 4 -   2996164 CCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775423 4 -   2157725 CCAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229734 4 -  71996105 CCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912691 4 +   2316924 TCAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771709 4 -   3067355 CCAG
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            134571 0 -    375362 C
e otoGar3.GL873742           1478731 0 -   2232465 C
e aotNan1.NW_018494050v1      103161 0 -    285216 C
e cebCap1.NW_016108108v1      138113 99 -    373274 I
e calJac3.chr4             171315810 63 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=12606.000000
s hg38.chr6_GL000254v2_alt     66798 2 +   4827813 GA
s panTro5.chr6              29037360 2 + 175400573 GA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281488 2 + 173848474 GA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080634 2 +   6154872 GA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223811 2 + 172585720 GA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28911977 2 - 170955103 GA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1889818 2 -   2996164 GA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775427 2 -   2157725 GA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229738 2 -  71996105 GA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912695 2 +   2316924 GA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771713 2 -   3067355 GA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            134571 2 -    375362 GA
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1478731 0 -   2232465 C
e aotNan1.NW_018494050v1      103161 0 -    285216 C
e cebCap1.NW_016108108v1      138113 99 -    373274 I
e calJac3.chr4             171315810 63 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=40896.000000
s hg38.chr6_GL000254v2_alt     66800 8 +   4827813 AATTAAAA
s panTro5.chr6              29037362 8 + 175400573 AATTAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281490 8 + 173848474 AATTAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080636 8 +   6154872 AATTAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223813 8 + 172585720 AATTAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28911979 8 - 170955103 AATTAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1889820 8 -   2996164 AATTAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775429 8 -   2157725 AATTAAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229740 8 -  71996105 AATTAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912697 8 +   2316924 AATTAAAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771715 8 -   3067355 AATTAAAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            134573 8 -    375362 AGGGGGGG
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1478731 8 -   2232465 aatttaaa
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      103161 0 -    285216 C
e cebCap1.NW_016108108v1      138113 99 -    373274 I
e calJac3.chr4             171315810 63 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=372371.000000
s hg38.chr6_GL000254v2_alt     66808 61 +   4827813 AAG-AAAAAGTATGAAACACAAAGAAAATACATGACACGTGGGTATTACCTTCCTCCAAAAA
s panTro5.chr6              29037370 61 + 175400573 AAG-AAAAAGTATGAAACAAAAAGAAAATACATGGCACGTGGGTATTACCTTCCTCCAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281498 61 + 173848474 AAG-AAAAAGTATGAAACAAAAAGAAAATACATGGCACGTGGGTATTACCTTCCTCCAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080644 62 +   6154872 AAGAAAAAAGTATGAAACAAAAAGAAAATACATGGCACGTGTGTATTACCTTCCTCCAAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223821 61 + 172585720 AAG-AAAAAGTATGAAACAAAAAGAAAATACATGGCATGTGTGAATTACCTTCCTCCAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28911987 61 - 170955103 AAG-AAAAAGTATGAAACAAAAAGAAAATACATGGCATGTGTGAATTACCTTCCTCCAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1889828 61 -   2996164 AAG-AAAAAGTATGAAACAAAAAGAAAATACATGGCATGTGTGAATTACCTTCCTCCAAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775437 61 -   2157725 AAG-AAAAAGTATGGAACAAAAAGAAAATACATGGCATGTGTGAATTACCTTCCTCCAAAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229748 61 -  71996105 AAG-AAAAAGTATGAAACAAAAAGAAAATACATGGCATGTGTGAATTACCTTCCTCCAAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912705 61 +   2316924 AAG-AAAAAGTATGAAACAAAAAGAAAATACATGGCATGTGTGTATTACCTTCCTCCAAAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771723 61 -   3067355 AAG-AAAAAGTATGAAACAAAAAGAAAATACATGGCATGTGTGTATTACCTTCCTCCGAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315873 61 - 171630274 AGA-AATAAGTACGAAACGACAAGAAAATACGTGGCATGTCTGCCTTACCTTCCAGCAAAAA
i calJac3.chr4             I 63 I 2
s saiBol1.JH378348            134581 60 -    375362 GGG-GGGAGGTATGAAACAACAAGAAAATACTTGGCACATCTG-CTTACCTTCCAGCAAAAA
i saiBol1.JH378348         C 0 I 2
s otoGar3.GL873742           1478739 40 -   2232465 --------aatat--------------atatatGGAATGCTTGCATTACTTTCCTCCAAAAA
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e cebCap1.NW_016108108v1      138113 99 -    373274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=285395.000000
s hg38.chr6_GL000254v2_alt     66869 42 +   4827813 --ATGTATCTCAAAACAAACATGTGATTGGCC-------------TGGGGGCACACA
s panTro5.chr6              29037431 42 + 175400573 --ATGTATCTCAAAACAAACATGTGATTGGCC-------------TGGGGGCACACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281559 42 + 173848474 --ATGTATCTCAAAACAAACATGTGATTGGCC-------------TGGGGGCACACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080706 42 +   6154872 --ATGTATCTCAAAACAAACATGTGATTGGCC-------------TGGGGGCACACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223882 42 + 172585720 --ATGTATCTCAAAACAAACACATGATTGGCC-------------TGGGGTCACACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912048 42 - 170955103 --ATGTATCTCAAAACAAACACATGATTGGCC-------------TGGGGTCACACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1889889 42 -   2996164 --ATATATCTCAAAACAAACACATGATTGGCC-------------TGGGGTCACACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775498 42 -   2157725 --ATGTATCTCAAAACAAACATATGATTGGCC-------------TGGGGTCACACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229809 42 -  71996105 --ATGTATCTCAAAACAAACACATGATTGGCC-------------TGGGGTCACACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912766 42 +   2316924 --CTGTATCTCAAAACAAACATATGATTGGTC-------------TGGAGGCACACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771784 42 -   3067355 --ATGTATCTCAAAACAAACACATGATTGGCC-------------TGGGGTCACACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315936 52 - 171630274 --ATATATTTTATAACAAACATGTGATTGGCCGGCGGCGGGGGGAGGGGGA---GCG
i calJac3.chr4             I 2 C 0
s saiBol1.JH378348            134643 39 -    375362 --ATGTATTTTGTAACAAACATATGCTTGGCC-------------TGGGGG---GCG
i saiBol1.JH378348         I 2 C 0
s cebCap1.NW_016108108v1      138212 39 -    373274 --ATGTATTTTATAACAAACGTATGATTGGCC-------------TGGGGG---GCG
i cebCap1.NW_016108108v1   I 99 C 0
s otoGar3.GL873742           1478779 44 -   2232465 AAATGCATCCTGAAACAAATTTATAATTGCCC-------------TCAAGGCACACA
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=33176.000000
s hg38.chr6_GL000254v2_alt     66911 4 +   4827813 CACA
s panTro5.chr6              29037473 4 + 175400573 CACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281601 4 + 173848474 CACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080748 4 +   6154872 CACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223924 4 + 172585720 CACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912090 4 - 170955103 CACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1889931 4 -   2996164 CACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775540 4 -   2157725 CACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229851 4 -  71996105 CACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912808 4 +   2316924 CACG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771826 4 -   3067355 CACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315988 4 - 171630274 CACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134682 4 -    375362 CACA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      138251 4 -    373274 CACA
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1478823 0 -   2232465 C
e aotNan1.NW_018494050v1      103161 0 -    285216 C
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=273265.000000
s hg38.chr6_GL000254v2_alt     66915 34 +   4827813 GCCAGTCCTCAGCTAAGCAGGTTTCACTAGACCG
s panTro5.chr6              29037477 34 + 175400573 GCCAGTCTTCAGCTAAGCAGGTTTCACTAGACCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281605 34 + 173848474 GCCAGTCTTCAGCTAAGCAGGTTTCACTAGACCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080752 34 +   6154872 GCCAATCCTCAGCTAGGCAGGTTTCACTAGACCG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223928 34 + 172585720 GCCAGTCCTCAGCTAAGCAGGTTTCACTAGACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912094 34 - 170955103 GCCAGTCCTCAGCTAAGCAGGTTTCACTAGACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1889935 34 -   2996164 GCCAGTCCTCAGCTAAGCAGGTTTCACCAGACAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775544 34 -   2157725 GCCAGTCCTCAGCTAAGCAGGTTTCACTAGACAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229855 34 -  71996105 GCCAGTCCTCAGCTAAGCAGGTTTCACTAGACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912812 34 +   2316924 GCCAGACCTCAGCTAAGCAGGTTTCACCAGACGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771830 34 -   3067355 GCCAGTCCTCAGCTAAACAGGTTTCACTAGACAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171315992 34 - 171630274 GGAAATCCTCAGCTAAGCAGGTTTCACCAGACAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134686 34 -    375362 GGCAATCCTCAGCTAAGCAGGTTTCACCAGATAG
i saiBol1.JH378348         C 0 I 29948
s cebCap1.NW_016108108v1      138255 34 -    373274 GGCAATCCTCAGCTAAGCAGATTTCACCAGACAA
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1478823 34 -   2232465 GCCAATCCTCAGCTAATTGGATTTCATCAGTTAT
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      103161  0 -    285216 C
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=789614.000000
s hg38.chr6_GL000254v2_alt     66949  85 +   4827813 TATCCCTCCTGGATGCTAGTTATAGATACTTTCACTGGACAAAAGAATCAAGAAGTAAAGACATGCCAGCCTGAT--AGAGTGT-------------------TAG
s panTro5.chr6              29037511  85 + 175400573 TATCCCTCCTGGATGCTAGTTATAGATACTTTCACTGGACAAAAGAATCAAGAAGTAAAGACATGCCAGCCTGAT--AGAGTGT-------------------TAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281639  85 + 173848474 TATCCCTCCTGGATGCTAGTTATAGATACTTTCACTGGACAAAAGAATCAAGAAGTAAAGACATGCCAGCCTGAT--AGAGTGT-------------------TAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080786  85 +   6154872 TATCCCTCCTGGATGCTAGTTATAGATACTTTCACTGGACAAAAGAATCAAGAAGTAAAGACATGCCAGCCTGAT--AGAGTGT-------------------TAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29223962  85 + 172585720 TATTCCTCCTGGATGCTAGTTATAGATATTTTCACTGGACAAAAGAATCAAGAAATAAAGACATGCCAGACTGAT--AGAGTGT-------------------TAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912128  85 - 170955103 TATTCCTCCTGGATGCTAGTTATAGATATTTTCACTGGACAAAAGAATCAAGAAATAAAGACATGCCAGACTGAT--AGAGTGT-------------------TAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1889969  85 -   2996164 TATTCCTCCTGGATGCTAGTTATAGATATTTTCACTGGACAAAAGAATCAAGAAATAAAGACATGCCAGCCTGAT--AGAGTGT-------------------TAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775578  85 -   2157725 TATCCCTCCTGGATGCTAGTTATAGATATTTTCACTGGACAAAAGAATCAAGAAGTAAAGACATGCCAGCCTGAT--AGAGTGT-------------------TAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229889  85 -  71996105 TATTCCTCCTGGATGCTAGTTATAGATATTTTCACTGGACAAAAGAATCAAGAAGTAAAGACATGCTAGCCTGAT--AGAGTGT-------------------TAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912846 101 +   2316924 TATCCCTCCTGGATGCCGGTTATAGATATTTTCACTGGACAAAAGAAGC---AAGTAAGGTCATATCAGCCTCAT--AGAGTGTATCTATCATGCCAGCCTGATAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771864  85 -   3067355 TATTCCTCCTGGATGCTAGTTATAGATATTTTCACTGGACAAAAGAATCAAGAAGTAAAGACATGCCAGCCTGAT--AGAGTGT-------------------TAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171316026  85 - 171630274 TACCCCTCCTGGACGCTGGTTATGGATATTTTCACTGGACAAAAGAATCAAGAAGTAAGGACATCCCAGCCTGAT--ACCGTGT-------------------TAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            164668  85 -    375362 TATCCCTCCTGGATGCTGGTTATAGACATTTTCACTGGATAAAAGCATCAAGAAGTAAAGACATGCTAGCCTGGT--AGAGTGT-------------------TAG
i saiBol1.JH378348         I 29948 C 0
s cebCap1.NW_016108108v1      138289  85 -    373274 TATCCCTCCTGGATGCTGGTTATGGGTGTTTTCACCGGACAATAGAATCAAGAGGTGAGGACATCCCAGCCTGAT--AGAGTGT-------------------TAG
i cebCap1.NW_016108108v1   C 0 I 3965
s aotNan1.NW_018494050v1      103161  85 -    285216 TATCCCTCCTGGATGCTGGTTATAGATGTTTTCACTGGACAAAAGAATCAAGAAGTAAAGATATGCTAGCCTGTT--TGAGTGT-------------------TAG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1478857  87 -   2232465 GATCTCTCCTGAATGCCTTTTGTGGATATTTTCACTAGACAAGGGAATCAAGAAATAAGGACAATCCAGCCTGATAAAGAGTGT-------------------TAG
i otoGar3.GL873742         C 0 C 0
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=663336.000000
s hg38.chr6_GL000254v2_alt     67034 104 +   4827813 GCTGGTGGACTGGGAATAAACATTGTAGTTTCTTGTCTCTCAAAGACACTTTAATTCAACAATAAATAAATAAA--TATGTACAGAGAGAACAGCAGTTTTGAAAC
s panTro5.chr6              29037596 104 + 175400573 GCTGGTGGACTGGGAATAAACATTGTAGTTTCTTGCCTCTCAAAGACACTTTAATTCAACAATAAATAAATAAA--TATGTACAGAGAGAACAGCAGTTTTGAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281724 104 + 173848474 GCTGGTGGACTGGGAATAAACATTGTAGTTTCTTGCCTCTCAAAGACACTTTAATTCAACAATAAATAAATAAA--TATGTACAGAGAGAACAGCAGTTTTGAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080871 100 +   6154872 GCTGGTGGACTGGGAATAAACATTGTAGTTTCTCGCCTCTCAAAGACACTTTAATTCAAC----AATAAACAAA--TATGTACAGAGAGAACAGCAGTTTTGAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29224047 100 + 172585720 GCTGGTGGACTGGGAACAAACATTGTAGTTTCTTGCCTCTCAAAGACACTTTAATTCAAC----AATAAATAAA--TGTGTACAGAGAGAACAGCAGTTTTGAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912213 100 - 170955103 GCTGGTGGACTGGGAACAAACATTGTAGTTTCTTGCCTCTCAAAGACACTTTAATTCAAC----AATAAATAAA--TGTGTACAGAGAGAACAGCAGTTTTGAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1890054 100 -   2996164 GCTGGTGGACTGGGAAAAAACATTGTAGTTTCTTGCCTCTCAAAGACACTTTAATTCAAC----AATAAATAAA--TGTGTACAGAGAGAACAGCAGTTTTGAAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775663 100 -   2157725 GCTGGTGGACTGGGAACAAACATTGTAGTTTCTTGCCTCTCAAAGACACTTTAATTCAAC----AATAAATAAA--TGTGTACAGAGAGAACAGCAGTTTTGAAAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28229974 100 -  71996105 GCTGGTGGACTGGGAACAAACATTGTAGTTTCTTGCCTCTCGAAGACACTTTAATTCAAC----AATAAATAAA--TGTGTACAGAGAGAACAGCAGTTTTGAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912947  96 +   2316924 GCTGGTGGACTAGGAACAAAGGTCATACTCTCTTGCCTCTCAAAGACACTTTAATTCAAC----AGGAAATA------CGTGCAGAGAGAACAGCAGTTTTGAAAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1771949 100 -   3067355 GCTGGTGGACTGGGAACAAACATTGTAGTTTCTTGCCTCTCAAAGACACTTTAATTCAAC----AATAAATAAA--TATGTACAGAGAGAACAGCAGTTTTGAAAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171316111  95 - 171630274 ACGGGAGGA-TGGTGACAGACATCACATTCTGCTGCCTCTCGCAGATGCTTTGATCCAAC----AGCAAGAG------TGCACGCAGAGGGCAGCCGTTTTGAAAC
i calJac3.chr4             C 0 I 124
s saiBol1.JH378348            164753  96 -    375362 CCTGGTGGACTGGGAACAAACTTCCCACCCTCTTGCCTCTCAGAAACGCTTTAATTCAAC----AGCAAATA------TATGCAGAGAGAACAGCACTTTGCAATC
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      103246  96 -    285216 CCTGGTGGACTCGGAACAAACTTCCTCCCCTCTTGCCTCTCAGAGACACTTTAATTCAAC----AGCAAATA------TGTTCAGAGGGAACAGCACTTTGGAAAC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1478944 100 -   2232465 GCTGGAGGATTGCGAATAACCACTGTTTTGTGTTACCTCCGGAAGACA--TCAGTTTAAT----GGCAAAAGCACGTATGTACATAGATAACAACAGTTTtgaaac
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=771247.000000
s hg38.chr6_GL000254v2_alt     67138 137 +   4827813 TGTATACCATTGGAAA-CCTTTAACAGGTACCATGAGTGCAT-AGAATTTCTTGGGAGTTCCCTTTTC--AAAAAAA-GCAGTTGTAATCAGATGGATCGAGAAAGAAC--ATGAAATGTTTGTTTGGTTTTTTCCAAGGCAGA-
s panTro5.chr6              29037700 138 + 175400573 TGTATACCATTGGAAA-CCTTTAACAGGTACCATGAGTGCAT-AGAATTTCTTGGGTGTTCCCTTTTC--AAAAAAAAGCAGTTGTAATCAGATGGATCGAGAAAGAAC--ATGAAATGTTTGTTTGGTTTTTTCCAAGGCAGA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281828 137 + 173848474 TGTATACCATTGGAAA-CCTTTAAAAGGTACCATGAGTGCAT-AGAATTTCTTGGGTGTTCCCTTTTC--AAAAAAA-GCAGTTGTAATCAGATGGATCGAGAAAGAAC--ATGAAATGTTTGTTTGGTTTTTTCCAAGGCAGA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5080971 137 +   6154872 TGTATACCATTGGAAA-CCTTTAACAGGTACCATGAGTGCAT-AGAATTTCTTGGGAGTTCCCTTTTC--AAAAAAA-GCAGTTGTAATCAGATGGATCGAGAAAGAAC--ATGAAATGTCTGTTTGGTTTTTTCCAAGGCAGA-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29224147 139 + 172585720 TGTACACCATTGGAAA-CCCTTAACAGGTACCATGAATGCAT-AAAATTTCTTGGGAGTTCCCTTTTCAAAAAAAAA-GCAGTTGTAATCAGATGGATCGAGAAAGAAC--ATGAAACGTTTGTTTGTTTTTTTCCACCGGAGG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912313 139 - 170955103 TGTACACCATTGGAAA-CCCTTAACAGGTACCATGAATGCAT-AAAATTTCTTGGGAGTTCCCTTTTCAAAAAAAAA-GCAGTTGTAATCAGATGGATCGAGAAAGAAC--ATGAAACGTTTGTTTGTTTTTTTCCACCGGAGG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1890154 139 -   2996164 TGTACACCATTGGAAA-CCCTTAACAGGTACCATGAATGCAT-AAAATTTCTTGGGAGTTCCCTTTTCAAAAAAAAA-GCAGTTGTAATCAGATGGATCGAGAAAGAAC--ATGAAACGTTTGTTTGTTTTTTTCCACCGGAGG-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775763 138 -   2157725 TGTACACTATTGGAAA-CCTTTAACAGGTACCATGAATGCAT-AAAATTTCTTGGGAGTTCCCTTTTC-AAAAAAAA-GCAGTTGTAATCAGATGGATTGAGAAAGAAC--ATGAAACGTTTGTTTGTTTTTTTCCACCGGAGG-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28230074 139 -  71996105 TGTGCACCATTGGAAA-CCCTTAACAGGTACCATGAATGCAT-AAAATTTCTTGGGAGTTCCCTTTTCAAAAAAAAA-GCAGTTGTAATCAGATGGATCAAGAAAGAAC--ATGAAATGTTTGTTTGTTTTTTTCCACCGGAGG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913043 136 +   2316924 CATACATCACTGGAAA-CCC-TAAAAGTTATCATGGGTGTAT-AGGATTTCTTGGGAGTTCCTTCTCC--AAAAAAA-GCAGATGTAATCAGATGGATTGAGAAAGAAC--ATGAAATGTTTATCTGGTTTTTCCCACGGCAGG-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1772049 133 -   3067355 TGTACACCATTGGAAA-CCCTTAACAGGTACCATGAATGCAT-AAAATTTCTTGGGAGTTCCCTTTTC-AAAAAAAA-GCAGTTGTAATCAGATGGATCGAGAAAGAAC--ATGAAATGTTT-----TTTTTTTCCACCAGAGG-
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            164849 112 -    375362 CATACACCATTGGAAACCCCTCCAAAGGTACCATGAGTGCAT-AGGATTTCTTGGGAGTTTCATATTCAA-----------------------------GAAAAAAAAA--ATGAAATGTTTGTTTGCTTTTTTCCACCAGAGG-
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      103342 133 -    285216 CACACACCATTGGAAA--CCTTCAAAGGTACCATGAGTGCGT-AGGATTTCTTGGGAGTTCCATCTTCAAAAAAAAA-GCAGATGTAATCAGATGAATCGAAAAAAACC--ATGAAATGTTTG-----CTTTTTCCACCAGAGG-
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479044 138 -   2232465 cataaagcaatggaaa-tccttagaaatgctattcagtggatcagaaattcttagcactttcctgtc---atacgaa-gcagatgtaatcagattgaatgagaaagaacagaggaaaTGTATGTTTGTTTGTTTT--ACGGAGGA
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171316206 124 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=921364.000000
s hg38.chr6_GL000254v2_alt     67275 129 +   4827813 AAGCGCCC-ACACAATTGCGATCTACTTACCTTTTACTCTGCATGTATTTTCCATTGTGACAGAAAACCTTTCCCTGGTTTTTTCTTAT---GGGCCTCTGTTTGCTGTTACCAGAAGTTCCCAGGCAATATT---
s panTro5.chr6              29037838 129 + 175400573 AAGTGCCC-ACACAATTGCGATCTACTTACCTTTTACTCTGCATGTATTTTCCATTGTGACAGAAAACCTTTCCCTGGTTTTTTCTTAT---GGGCCTCTGTTTGCTGTTACCAGAAGTTCCCAGGCAATATT---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29281965 129 + 173848474 AAGTGCCC-ACACAATTGCGATCTACTTACCTTTTACTCTGCATGTATTTTCCATTGTGACAGAAAACCTTTCCCTGGTTTTTTCTTAT---GGGCCTCTGTTTGCTGTTACCAGAAGTTCCCAGGCAATATT---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081108 128 +   6154872 AAGTGCCC-ACACAATTGCGATCTACTTACCTTTTACTCTGCATGTATTTTCCATTGTGACAGAAAACCTTTCCCT-GTTTTTTCTTAT---GGACCTCTGTTTGCTGTTACCAGAAGTTCCCAGGCAATATT---
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29224286 130 + 172585720 AAGTGCCCAACACGATTGCGATCTACTTACCTTTTACTCTGCATGTATTTTCCATTGTGACAGAAAACCTTTTCCTGTTTTTTTCATAT---GGGCCTCCGTTTGCTGTTACCAGAAGTTCCCAGGCAATATT---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912452 130 - 170955103 AAGTGCCCAACACGATTGCGATCTACTTACCTTTTACTCTGCATGTATTTTCCATTGTGACAGAAAACCTTTTCCTGTTTTTTTCATAT---GGGCCTCCGTTTGCTGTTACCAGAAGTTCCCAGGCAATATT---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1890293 130 -   2996164 AAGTGCCCAACACGATTGCGATCTACTTACCTTTTACTCTGCATGTATTTTCCATTGTGACAGAAAACCTTTTCCTGTTTTTTTCATAT---GGGCCTCCGTTTGCTGTTACCAGAAGTTCCCAGGCAATATT---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1775901 130 -   2157725 AAGTGCCCAACACGATTGCGATCTACTTACCTTTTACTCTGCATGTATTTTCCATTGTGACAGAAAACCTTTTCCTGTTTTTTTCATAA---GGGCCTCCGTTTGCTGTTACCAGAAGTTCCCAGGCAATATT---
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28230213 130 -  71996105 AAGTGCCCAACACGATTGCGATCTACTTACCTTTTACTCTGCATGTATTTTCCATTGTGACAGAAAACCGTTTCCTGTTTTTTTCATAT---GGGCCTCCGTTTGCTGTTACCAGAAGTTCCCAGGCAATATT---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913179 130 +   2316924 AAGTGCTGAACACACCTGCGATCTACTTACCTTTTAGTCTACATGTATTTTCCACTGTGACAGAAAATCTTTTCCTAGTTTTTT-ATAT--GGGGCCTCCGTTTGCTGTTACCAGAAGTTCCCAGGCAATATT---
i manLeu1.NW_012104165v1   C 0 I 19
s colAng1.NW_012115566v1     1772182 129 -   3067355 AAGTGCCCAATATGATCGCGATCTACTTACCTTTTACTCTGCAGATATTTTCCATTGTGACAGAAAATCTTTTCCTG-TTTTTTCATAT---GGGCCTCCGTTTGCTGTTACCAGAAGTTCCCAGGCAATATT---
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171316330 129 - 171630274 AAATG-CCAATACACCTGTAATTTACTCACCTTTTACTCTGCATCTGTTTTCCATCATGACAGAAAAGTTTGCTCTA-CTTTTTCATAT--GGGGCCTCTGTTTGCTCTTAACAGAGGTTTCCAGGAAATGtt---
i calJac3.chr4             I 124 I 8605
s saiBol1.JH378348            164961 130 -    375362 AAGTGCCCAGCCCACCTGTGATCTACTCACATGTTACTCTACATGTATTTTCCATCGTCACAGAAAACCTTTTCCTA-CTTTTTCGTGT--GGGGCCTCTATTTGCTGTTACCAGAAGTACCCAGGCAATGTT---
i saiBol1.JH378348         C 0 I 6
s aotNan1.NW_018494050v1      103475 130 -    285216 AGGCGCCCAGCCCACCTGCGATCCACTCACCTGTTACTCTGCATGTATGTTCTATTGTGACAGAAAATCTTTTCCTA-CTTTTTCGTGT--GGGGCCTCCGTTTGCTGTTACCAGAAGTACCCAGGCAATGTT---
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479182 129 -   2232465 AAGTGCCC-TAACACCTGCTATTTACTCACCTTTTACTTTGCGGCCGTTTTCTACTGTGACAGAAAACTTTTTCTTG-CTTCTTCATTTGGGAGGCCTAGGTTCGC-ATTAAAAGAGGTTTCC----AATATTTTT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=3303.000000
s hg38.chr6_GL000254v2_alt     67404 3 +   4827813 ACA--
s panTro5.chr6              29037967 3 + 175400573 ACA--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282094 3 + 173848474 ACA--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081236 3 +   6154872 ACA--
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29224416 3 + 172585720 GCA--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912582 3 - 170955103 GCA--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1890423 3 -   2996164 GCA--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776031 3 -   2157725 GCA--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28230343 3 -  71996105 GCA--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913328 3 +   2316924 GGA--
i manLeu1.NW_012104165v1   I 19 C 0
s colAng1.NW_012115566v1     1772311 3 -   3067355 GCA--
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            165097 3 -    375362 TTA--
i saiBol1.JH378348         I 6 I 13
s aotNan1.NW_018494050v1      103605 3 -    285216 TTA--
i aotNan1.NW_018494050v1   C 0 I 38
s otoGar3.GL873742           1479311 3 -   2232465 --ATT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171316459 8605 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=113809.000000
s hg38.chr6_GL000254v2_alt     67407 22 +   4827813 GTGACTGA-GGAAATGCAGGAAT
s panTro5.chr6              29037970 22 + 175400573 GTGACTGA-GGAAATGCAGGAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282097 22 + 173848474 GTGACTGA-GGAAATGCAGGAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081239 22 +   6154872 GTGACTGA-GGAAATGCAGGAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29224419 22 + 172585720 GTGACTGA-GGAAATACAGgaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912585 22 - 170955103 GTGACTGA-GGAAATACAGgaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1890426 22 -   2996164 GTGACTGA-GGAAATACAGgaat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776034 22 -   2157725 GTGACTGA-GGAAATACAGGAAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28230346 22 -  71996105 GTGACTGA-GGAAATACAGgaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913331 18 +   2316924 GTGACTGA-GGAAATACAG----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1772314 22 -   3067355 GTGACTGA-GGAAATACAGgaat
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            165113 18 -    375362 GTGGCTGA-AGAAATACGG----
i saiBol1.JH378348         I 13 C 0
s otoGar3.GL873742           1479314 22 -   2232465 -TTAATGATGAAAATGAAGTGAT
i otoGar3.GL873742         C 0 I 6
e aotNan1.NW_018494050v1      103608 38 -    285216 I
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171316459 8605 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=6247.000000
s hg38.chr6_GL000254v2_alt     67429 2 +   4827813 AT
s panTro5.chr6              29037992 2 + 175400573 AC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282119 2 + 173848474 AC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081261 2 +   6154872 AT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29224441 2 + 172585720 at
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912607 2 - 170955103 at
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1890448 2 -   2996164 at
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776056 2 -   2157725 AT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28230368 2 -  71996105 at
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1772336 2 -   3067355 at
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            165131 0 -    375362 C
e otoGar3.GL873742           1479336 6 -   2232465 I
e aotNan1.NW_018494050v1      103608 38 -    285216 I
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171316459 8605 - 171630274 I
e manLeu1.NW_012104165v1     1913349 0 +   2316924 C
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=5232.000000
s hg38.chr6_GL000254v2_alt     67431 1 +   4827813 G
s panTro5.chr6              29037994 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282121 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081263 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29224443 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912609 1 - 170955103 g
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1890450 1 -   2996164 g
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776058 1 -   2157725 G
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28230370 1 -  71996105 g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913349 1 +   2316924 G
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1772338 1 -   3067355 g
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171325064 1 - 171630274 G
i calJac3.chr4             I 8605 C 0
s saiBol1.JH378348            165131 1 -    375362 T
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1479336 6 -   2232465 I
e aotNan1.NW_018494050v1      103608 38 -    285216 I
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=42848.000000
s hg38.chr6_GL000254v2_alt     67432 6 +   4827813 AATATG
s panTro5.chr6              29037995 6 + 175400573 AATATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282122 6 + 173848474 AATATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081264 6 +   6154872 AATATG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29224444 6 + 172585720 aatatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912610 6 - 170955103 aatatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1890451 6 -   2996164 aatatg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776059 6 -   2157725 AATATG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28230371 6 -  71996105 aatatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913350 6 +   2316924 AATACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1772339 6 -   3067355 aatatg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171325065 6 - 171630274 AAAGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            165132 6 -    375362 AATATG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      103646 6 -    285216 AATATG
i aotNan1.NW_018494050v1   I 38 C 0
e otoGar3.GL873742           1479336 6 -   2232465 I
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=1243365.000000
s hg38.chr6_GL000254v2_alt     67438 181 +   4827813 AATCAGTCTTATGGAATATCAGTAGGGAATGT--TGATCCGTATTAGTTTTTGCTT------CTTGCATGTTGAAGG-CCTCTAATTCCCGGACAGTCTTCGTTTGGCCGTCCAGCGTCCTGCCACTCCTATCTCAAGTGGCTAGAGAGCCACAGCAGTCCTTGTCTCAGTATTGGATCGCACTTATG-------TC-------
s panTro5.chr6              29038001 181 + 175400573 AATCAGTCTTATGGAATATCAGTAGCGAATGT--TGATCCGTATTAGTTTCTGCTT------CTTGCATGTAGAAGG-CCTCTAATTCCCGGACAGTCTTCGTTTGGCCGTCCAGCGTCCTGCCACTCCCATCTCAAGTGGCTAGAGAGCCACAGCAGTCCTTGTCTCAGTATTGGATCGCACTTATG-------TC-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282128 181 + 173848474 AATCAGTCTTATGGAATATCAGTAGCGAATGT--TGATCCGTATTAGTTTCTGCTT------CTTGCATGTAGAAGG-CCTCTAATTCCCGGACAGTCTTCGTTTGGCCGTCCAGCGTCCTGCCACTCCCATCTCAAGTGGCTAGAGAGCCACAGCAGTCCTTGTCTCAGTATTGGATCGCACTTATG-------TC-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081270 181 +   6154872 ACTCAGTCTTATGGAATATCAGTAGGGAATGT--TGATCCCTATTAGTTTCTGCTT------CTTGCATGTTGAAGA-CCTCTAATTCCCGGACAGTCTTCGTTTGGCCGTCCAGCGTCCTGCCACTCCCATCTCAAGTGGCTAGAGAGCCACAGCAGTCCTTGTCTCAGTATTGGATCGCACTTGTG-------TC-------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29224450 180 + 172585720 aatcagtctcatggaatatcagtac-gaatGT--TGATCCATATTGGTTTCTGCTT------CTCTCATGTTGAAGG-CCTCTAATTCCCCGACAGTCTTTGTTCGGTCATCCAGCGTCCTTCCACTCCTATTTCAAGCGGCTAGAGAGCCACAGCAGTCCTTGTCTCAGTATTGGATCGCACTTGTG-------TC-------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912616 180 - 170955103 aatcagtctcatggaatatcagtac-gaatGT--TGATCCATATTGGTTTCTGCTT------CTCTCATGTTGAAGG-CCTCTAATTCCCCGACAGTCTTTGTTCGGTCATCCAGCGTCCTTCCACTCCTATTTCAAGCGGCTAGAGAGCCACAGCAGTCCTTGTCTCAGTATTGGATCGCACTTGTG-------TC-------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1890457 180 -   2996164 aatcagtctcatggaatatcagtac-gaatGT--TGATCCATATTGGTTTCTGCTT------CTCTCATGTTGAAGG-CCTCTAATTCCCCGACAGTCTTTGTTCGGTCATCCAGCGTCCTTCCACTCCTATTTCAAGCGGCTAGAGAGCCACAGCAGTCCTTGTCTCAGTATTGGATCGCACTTGTG-------TC-------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776065 180 -   2157725 AATCAGTCTCATGGAATATCAGTAC-CAATGT--TGATCCATATTGGTTTCTGTTT------CTCTCATGTTGAAGG-CCTCTAATTCCCCGACAGTCTTTGTTCGGTCATCCAGCGTCCTTCCAGTCCTATTTCAAGTGGCTAGAGAGCCACAGCAGTCCTTGTCTCAGTATTGGATCGCACTTGTG-------TC-------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28230377 180 -  71996105 aatcagtctcatggaatatcagtac-gaatGT--TGATCCATATTGGTTTCTGTTT------CTCTCAAGTTGAAGG-CCTCTAATTCCCCGACAGTCTTTGTTCGGTCATCCAGCGTCCTTCCACTCCTATTTCAAGCGGCTAGAGAGCCACAGCAGTCCTTGTCTCAGTATTGGATCGCACTTGTG-------TC-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913356 188 +   2316924 AATTAGTCTTATGGAATATCAGTACGGAATGT--TGATCCGTATTGGTTTCTGCTC------TTCGCACGTTGAAGG-CCTCTAATTCCCCTACAGTCTTCGTTCGATTGTCCAGCGTCCTGCCACTCCAATCTCAAGCGGCTGGAGAGCCACAGCAGACCTTGTCTCAGTACCGGATCACACTGGTGGCTGCGCTC-------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1772345 180 -   3067355 aatcagtctcatggaatatcagtac-gaatGT--TGATCCATATTGGTTTCTGTTT------TTCGCTTGTTGAAGG-CCTCTAATTCCCCGACAGTCTTTGTTCGGTCGTCCAGCGTCCTTCCACTCCTGTCTCAAGCGGCTAGAGAGCCACAGCAGTCCTTGTCTCAGTATTGGATCGCACTTGTG-------TC-------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171325071 177 - 171630274 AATCAACTGTATGGAATATCAGCAGGGAGCGT--TACTCCGTGTCGGTTTCTGCCT------CTCGCATGTCGAAGG--CTCTGATTTCCCCGCAGTCTTCGGTCGGCTGCGCGGCGTCCT--CCCCTCCATCTCCAGCGGCTGGAGAGCCGG-GCAGTCCCTGGCTTAGGACCGGATCGCACCTGCG-------GC-------
i calJac3.chr4             C 0 I 13
s saiBol1.JH378348            165138 173 -    375362 AGTCAGTCTTATGGAACATCAGTAGGGAATGT--TGATCCGTGTTGGTTTCTGCCC------CTGCCATGTTGCAGG--CTCTAATTCCCCGGCAGTC------CGGTTGTCCAGCGTCCTTCCCCTCCCATCTCCAGCGGCTGGAGAGCCAC-GCAGTCCCTGTCTCAGCACTGGATCACACTTGTG-------TC-------
i saiBol1.JH378348         C 0 I 6
s aotNan1.NW_018494050v1      103652 177 -    285216 AGTCAGTCTTACGGAATATCAGTAGGGAATGT--TGGTCCGTGTTGGTTTCTGCCC------CTCGCATGTCGCAGC--CTCTGATTCCCCGGCAGTCTTCGTTCGGTTGTGCGGCGTCCT-CCCCTCCCATTTCCAGCGGCTGGAGAGCCAC-GCAGTCCCTGTCTCAGCACT-GATCGCACTTGTG-------TC-------
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479342 193 -   2232465 AATAAATCCTATAGAATATCAATTGATAATGTGCTGATCTGTATTTATCTCCTCTTTTAATACTTTCGTATTGGAAGTCCTCCAGTTTCCCGAAAGATTTCGTTC--TTGTCCGGCCTCCTGCCACTC--ATCTAAAACGACTCGCGATCCACAGCAGTCCTCCTCTCAGTATTGGATCAAACTTTGG-------GCTGCGCTC
i otoGar3.GL873742         I 6 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=3806.000000
s hg38.chr6_GL000254v2_alt     67619 1 +   4827813 C
s panTro5.chr6              29038182 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282309 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081451 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29224630 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912796 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1890637 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776245 1 -   2157725 C
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28230557 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913544 1 +   2316924 T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1772525 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            165317 1 -    375362 T
i saiBol1.JH378348         I 6 C 0
s aotNan1.NW_018494050v1      103829 1 -    285216 T
i aotNan1.NW_018494050v1   C 0 I 11
s otoGar3.GL873742           1479535 1 -   2232465 T
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171325248 13 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=103784.000000
s hg38.chr6_GL000254v2_alt     67620 23 +   4827813 CTATGTAGGTTGAC-AGGGAGAGA
s panTro5.chr6              29038183 23 + 175400573 CTATGTAGGTCGAC-AGGGAGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282310 23 + 173848474 CTATGTAGGTCGAC-AGGGAGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081452 23 +   6154872 CTATGCAGGTCGAC-ACGGAGAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29224631 23 + 172585720 CTGTGCAGATCGAC-AGGGAGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912797 23 - 170955103 CTGTGCAGATCGAC-AGGGAGAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1890638 23 -   2996164 CTGTGCAGATCGAC-AGGGAGAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776246 23 -   2157725 CTGTGCAGGTCGAC-AGGGAGAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28230558 23 -  71996105 CTGTGCAGGTGGAC-AGGGAGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913545 23 +   2316924 CTGCTCATGTCAAC-AAGGAGAGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1772526 23 -   3067355 CTGTGCAGGTCGAC-AGGGAGAGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            165318  7 -    375362 CTGCGCA-----------------
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1479536 24 -   2232465 CTGTTCAGGTCGACAAGGGAGAGA
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      103830 11 -    285216 I
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171325248 13 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=434658.000000
s hg38.chr6_GL000254v2_alt     67643 60 +   4827813 CTGGTGTAGAAATGAGTGGACAGATGCTTTCGCTCTGTTCTTTGGCCCAGAAAACAAA----AA
s panTro5.chr6              29038206 60 + 175400573 CTGGTGTAGAAATGAGTGGACAGATGCTTTCGCTCTGTTCTTTGGCCCAGAAAACAAA----AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282333 60 + 173848474 CTGGTGTAGAAATGAGTGGACAGATGCTTTCGCTCTGTTCTTTGGCCCAGAAAACAAA----AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081475 60 +   6154872 CTGGTGTAGAAATGAGTGGACAGATGCTTTCGCTCTGTTCTTTGGCCCAGaaaacaaa----aa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29224654 58 + 172585720 CTGGTGGAGAAATCAGTCGACAGATGCTTTCGCTCTGTTCTTTGGCCCAGAAAACAAA------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912820 58 - 170955103 CTGGTGGAGAAATCAGTCGACAGATGCTTTCGCTCTGTTCTTTGGCCCAGAAAACAAA------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1890661 58 -   2996164 CTGGTGGAGAAATCAGTCGACAGATGCTTTCGCTCTGTTCTTTGGCCCAGAAAACAAA------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776269 58 -   2157725 CTGGTGGAGAAATCAGCGGACGGATGCTTTCGCTCTGTTCTTTGGCCCAGAAAACAAA------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28230581 58 -  71996105 CTGGTGGAGAAATCAGCGGGCGGATGCTTTCGTTCTGTTCTTTGGCCCAGAAAACAAA------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913568 60 +   2316924 CCGGTGGAGAAATCAGTGGACAGAGGCTTTCGCTCTGTTCTTTAACCCAGaaaacaaaaa----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1772549 60 -   3067355 CTGGTGGAGAAATCAGCGGACAGATGCTTTCGCTCTGTTCTTTGGCCCAGAAAACAAA--CA--
i colAng1.NW_012115566v1   C 0 I 13
s calJac3.chr4             171325261 60 - 171630274 CAGGTGGAGGAATCAGTGGACAGATGCTTTTCCTCTGTTCTTTGGCCCAGAAAACAAA----AA
i calJac3.chr4             I 13 C 0
s saiBol1.JH378348            165325 55 -    375362 --GGTGGAGAAATCAGTGGACGGATGCTTTCGCTCTG---TTTCGCCCAGAAAACACA----AA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      103841 60 -    285216 CAGATGGAGAAATCAGTGGACAGATGCTTTCACTCCGTTCTTCGGCCCAGaaaacaaa----aa
i aotNan1.NW_018494050v1   I 11 C 0
s otoGar3.GL873742           1479560 51 -   2232465 CTGCTGGAGAAATCAGTGGACAAATGCTTTCGCTTTGTTCTTTGGCCCAGA-------------
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=1267.000000
s hg38.chr6_GL000254v2_alt     67703 17 +   4827813 TAACTT---AAAAA--AAAAAA
s panTro5.chr6              29038266 17 + 175400573 TAACTT---AAAAA--AAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282393 16 + 173848474 TAACTT----TAAA--AAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081535 20 +   6154872 taacttaaaaaaaa--aaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29224712  6 + 172585720 ----------------CAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912878  6 - 170955103 ----------------CAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1890719  6 -   2996164 ----------------CAAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776327  6 -   2157725 ----------------CAAAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28230639  6 -  71996105 ----------------CAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913628 11 +   2316924 -----------taacttaaaaa
i manLeu1.NW_012104165v1   C 0 T 14706
s calJac3.chr4             171325321 12 - 171630274 CAACGT----------AAAAaa
i calJac3.chr4             C 0 I 5
s saiBol1.JH378348            165380 12 -    375362 TAACGT----------TTTTAA
i saiBol1.JH378348         C 0 I 1
s aotNan1.NW_018494050v1      103901 12 -    285216 taactt----------aaaaaa
i aotNan1.NW_018494050v1   C 0 I 148
s otoGar3.GL873742           1479611  9 -   2232465 -----------AAA--CAAAAA
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e colAng1.NW_012115566v1     1772609 13 -   3067355 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=3580.000000
s hg38.chr6_GL000254v2_alt     67720 2 +   4827813 GA
s panTro5.chr6              29038283 2 + 175400573 GA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282409 2 + 173848474 GA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081555 2 +   6154872 GA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29224718 2 + 172585720 CA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912884 2 - 170955103 CA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1890725 2 -   2996164 CA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776333 2 -   2157725 CA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28230645 2 -  71996105 CA
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             171325338 1 - 171630274 -a
i calJac3.chr4             I 5 I 229
s otoGar3.GL873742           1479620 2 -   2232465 GA
i otoGar3.GL873742         C 0 I 10
e saiBol1.JH378348            165392 1 -    375362 I
e aotNan1.NW_018494050v1      103913 148 -    285216 I
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e colAng1.NW_012115566v1     1772609 13 -   3067355 I
e manLeu1.NW_012104165v1     1913639 14706 +   2316924 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=12452.000000
s hg38.chr6_GL000254v2_alt     67722 19 +   4827813 TGCCCAC-TGGCATTTTTCT
s panTro5.chr6              29038285 19 + 175400573 TGCCCAC-TGGCATTTTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282411 19 + 173848474 TGCCCAC-TGGCATTTTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081557 19 +   6154872 TGCCCAC-TGGCATTTTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29224720  7 + 172585720 TACTCAC-------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912886  7 - 170955103 TACTCAC-------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1890727  7 -   2996164 TACTCAC-------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776335  7 -   2157725 TACTCAC-------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28230647  7 -  71996105 TACTCAC-------------
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378348            165393 20 -    375362 TGCCCGCGGGGCATTTTTCT
i saiBol1.JH378348         I 1 C 0
e otoGar3.GL873742           1479622 10 -   2232465 I
e aotNan1.NW_018494050v1      103913 148 -    285216 I
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171325339 229 - 171630274 I
e colAng1.NW_012115566v1     1772609 13 -   3067355 I
e manLeu1.NW_012104165v1     1913639 14706 +   2316924 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=138263.000000
s hg38.chr6_GL000254v2_alt     67741 33 +   4827813 ------CTCTTCTTGGTCTTTGCGTCTCTTTAATCATAG
s panTro5.chr6              29038304 33 + 175400573 ------CTCTTCTTGGTCTTTGCGTCTCTTTAATCATAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282430 33 + 173848474 ------CTCTTCTTGGTCTTTGCGTCTCTTTAATCATAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081576 33 +   6154872 ------CTCTTCTTGGTCTTTGCGTCTCTTTAATCATAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29224727 33 + 172585720 ------CCCCTTTTCGTCTTTGTGTCTCTTTAATCACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912893 33 - 170955103 ------CCCCTTTTCGTCTTTGTGTCTCTTTAATCACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1890734 33 -   2996164 ------CCCCTTTTCGTCTTTGCGTCTCTTTAATCACAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776342 33 -   2157725 ------CCCCTTTTCGTCTTTGCGTCTCTTTAATCACAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28230654 33 -  71996105 ------CCCCTTTTCGTCTTTGCGTCTCTTTAATCACAG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1772622 33 -   3067355 ------CCCCTTTTCATCTTTGCGTCTCTTTAATCACAG
i colAng1.NW_012115566v1   I 13 C 0
s saiBol1.JH378348            165413 39 -    375362 CCCTTCTTCTTCTTCGTCTTTCCATCTCTTTCATCATAG
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1479622 10 -   2232465 I
e aotNan1.NW_018494050v1      103913 148 -    285216 I
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171325339 229 - 171630274 I
e manLeu1.NW_012104165v1     1913639 14706 +   2316924 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=599223.000000
s hg38.chr6_GL000254v2_alt     67774 154 +   4827813 TACAAAATGGAAggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggctcacgaggtcggcagttcaagaccagcctgactaacatggtgaaaccccgtctctactaaaaatacaaaaaaattagctggg
s panTro5.chr6              29038337 154 + 175400573 CAGAAAATGGAAggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggctcacgaggtcggcagttcaagaccagcctgactaacatggtgaaaccccgtctctactaaaaatacaaaaaaattagctggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282463 154 + 173848474 TAGAAAATGGAAggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggctcgcgaggtcggcagttcaagaccagcctgactaacatggtgaaaccccgtctctactaaaaatacaaaaaaattagctggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081609 154 +   6154872 TACAAAATGGAAggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcggatggatcacgaggtcggcagttcaagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaaaattagctggg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29224760 154 + 172585720 TACAAAATGGAAAgccgggtgcggtggcttatgcctgtaattccagcactttgggaggccgaggcgggtggatcacgaggtcagcagttcaagaccagcctgagcaacatggcgaaaccccgtctctactaaaaatacgaaaaaattagctggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28912926 154 - 170955103 TACAAAATGGAAAgccgggtgcggtggcttatgcctgtaattccagcactttgggaggccgaggcgggtggatcacgaggtcagcagttcaagaccagcctgaccaacatggcgaaaccccgtctctactaaaaatacgaaaaaattagctggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1890767 154 -   2996164 TACAAAATGGAAAgccgggtgcggtggcttatgcctgtaattccagcactttgggaggccgaggcgggtggatcacgaggtcagcagttcaagaccagcctgaccaacatggcgaaaccccgtctctactaaaaatacgaaaaaattagctggg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776375 154 -   2157725 TACAAAATGGAAAgccgggtgcggtggcttatgcttgtaattccagcactttgggggaccgaggcgggtggatcacgaggtcagcagttcaagatcagcctgaccaacatggcgaaaccccgtctctactaaaaatacaaaaaaattagctggt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28230687 152 -  71996105 TACAAAATGGAAAgccaggtgcggtggcttatgcctgtaattccagcactttgggaggccgaggcgggtggatcacgaggtcagcagtgcaagaccaccctgaccaacatggcgaaa--ccgtctctactaaaaatatgaaaaaattagctggg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1772655 154 -   3067355 TACAAAATGGAAAgccgggtgcggtggcttatgcctgtaattccagcactttgggaggccaaggcgggtggatcacgaggtcagctgttcgagaccagcccgaccaacatggcgaaaccccgtctctactaaaaatacaaaaaaattagctggg
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            165452   0 -    375362 C
e otoGar3.GL873742           1479622  10 -   2232465 I
e aotNan1.NW_018494050v1      103913 148 -    285216 I
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171325339 229 - 171630274 I
e manLeu1.NW_012104165v1     1913639 14706 +   2316924 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=543705.000000
s hg38.chr6_GL000254v2_alt     67928 147 +   4827813 cgtggtggcgg-gcgcctgtaatcccagctacttgggaggctgaggcaggagaatctcttgaaaccggaaggcggaggttgcagtgagccgaggtggtgcgactgcactctagcctgggcaacgagagcaaaactccgtctcaaaaaa
s panTro5.chr6              29038491 147 + 175400573 cgtggtggcgg-gcgcctgtaatcccagctacttgggaggctgaggcaggagaatctcttgaaaccggaaggcggaggttgcagtgagccgaggtggtgcgactgcactctagcctgggcaacgagagcaaaactccgtctcaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282617 147 + 173848474 cgtggtggcgg-gcgcctgtaatcccagctacttgggaggctgaggcaggagaatctcttgaaaccggaaggcggaggttgcagtgagccgaggtggtgcgactgcactctagcctgggcaacgagagcaaaactccgtctcaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081763 146 +   6154872 cgaggtggtgg-gcgcctgtaat-ccagctacttgggaggctgaggcaggagaattgcttgaaaccggaaggcggaggttgcagtgagccgaggtggtgcgactgcactctagcctgggcaacgagagcaaaactccgtctcaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29224914 146 + 172585720 catggtggcgg-gcgcctgtaatcccagctgc-tgggaggctgaggcaggagaatcgcttgaaaccggaagacggaggttgcagtgggccgagattgtgccactgcactctagcctgggcaacgggagcaaaactccgtctcaaagaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28913080 147 - 170955103 catggtggcgg-gcgcctgtaatcccagctgcttgggaggctgaggcaggagaatcgcttgaaaccggaagacggaggttgcagtgggccgatattgtgccactgcactctagcctgggcaacgggagcaaaactccgtctcaaagaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1890921 147 -   2996164 cgtggtggcgg-gcgcctgaaatcccagctgcttgggaggctgaggcaggagaatcgcttgaaaccggaagacggaggttgcagtgggccgagattgtgccactgcactctagcctgggcaacgggagcaaaactccgtctcaaagaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776529 147 -   2157725 cgtggtggcgg-gcgcctgtaatcccagctgcttgggaggctgaggcaggagaatcgcttgaaaccggaagacggaggttgcagtgggcccagattgtgccactgcactgtagcctgggcaacgggagcaaaactccgtctcaaagaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28230839 147 -  71996105 cgtggtggcgg-gcgcctgtaatcccagctgcttgggaggctaaggcaggagaatcgcttgaaaccggaagacggaggttgcagtgggctgagattgtgccactgcactctagcctgggcaacgggagcaaaactctgtctcaaaaaa
i chlSab2.chr17            C 0 I 8
s colAng1.NW_012115566v1     1772809 143 -   3067355 cgtggtggcgg-gtgcctgtaatcccagctgcttgggaggctgaggcaggagaatcgcttgaaaccggaagacggaggttgcagtgggccgagattgtgccactgcactctaacctgggcaacgggagcaaaactctgt----aaaaa
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1479632  54 -   2232465 CGTGTTAGCGGAGCGCTTTTAACCCCTTCTTCTT---------------------------------------------------------------------TGTCTTTCAGTCTCGTTAAT-------------------------
i otoGar3.GL873742         I 10 C 0
e saiBol1.JH378348            165452   0 -    375362 C
e aotNan1.NW_018494050v1      103913 148 -    285216 I
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171325339 229 - 171630274 I
e manLeu1.NW_012104165v1     1913639 14706 +   2316924 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=13816.000000
s hg38.chr6_GL000254v2_alt     68075 20 +   4827813 caaaacaaacaaacaaaaac
s panTro5.chr6              29038638 20 + 175400573 caaaacaaacaaacaaaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282764 20 + 173848474 caaaacaaacaaacaaaaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081909 20 +   6154872 caaaacaaacaaacaaaaac
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29225060  4 + 172585720 ----------------aaac
i rheMac8.chr4             C 0 I 3
s macFas5.chr4              28913227  4 - 170955103 ----------------aaac
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1     1891068  4 -   2996164 ----------------aaac
i macNem1.NW_012011356v1   C 0 I 3
s cerAty1.NW_012001495v1     1776676  4 -   2157725 ----------------aaac
i cerAty1.NW_012001495v1   C 0 I 3
s colAng1.NW_012115566v1     1772952 18 -   3067355 --aaaaaaaaaaaaaaaaaC
i colAng1.NW_012115566v1   C 0 I 2
e saiBol1.JH378348            165452  0 -    375362 C
e otoGar3.GL873742           1479686  0 -   2232465 C
e aotNan1.NW_018494050v1      103913 148 -    285216 I
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171325339 229 - 171630274 I
e manLeu1.NW_012104165v1     1913639 14706 +   2316924 T
e chlSab2.chr17             28230986  8 -  71996105 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=8190.000000
s hg38.chr6_GL000254v2_alt     68095 2 +   4827813 aa
s panTro5.chr6              29038658 2 + 175400573 aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282784 2 + 173848474 aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081929 2 +   6154872 aa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29225067 2 + 172585720 aa
i rheMac8.chr4             I 3 C 0
s macFas5.chr4              28913234 2 - 170955103 aa
i macFas5.chr4             I 3 C 0
s macNem1.NW_012011356v1     1891075 2 -   2996164 aa
i macNem1.NW_012011356v1   I 3 C 0
s cerAty1.NW_012001495v1     1776683 2 -   2157725 aa
i cerAty1.NW_012001495v1   I 3 C 0
s manLeu1.NW_012104165v1     1898933 2 +   2316924 AA
i manLeu1.NW_012104165v1   T 14706 C 0
s colAng1.NW_012115566v1     1772972 2 -   3067355 AA
i colAng1.NW_012115566v1   I 2 C 0
e saiBol1.JH378348            165452 0 -    375362 C
e otoGar3.GL873742           1479686 0 -   2232465 C
e aotNan1.NW_018494050v1      103913 148 -    285216 I
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171325339 229 - 171630274 I
e chlSab2.chr17             28230986 8 -  71996105 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=15510.000000
s hg38.chr6_GL000254v2_alt     68097 3 +   4827813 aac
s panTro5.chr6              29038660 3 + 175400573 aac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282786 3 + 173848474 aac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081931 3 +   6154872 aac
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29225069 3 + 172585720 aac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28913236 3 - 170955103 aac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1891077 3 -   2996164 aac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776685 3 -   2157725 aac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28230994 3 -  71996105 aac
i chlSab2.chr17            I 8 C 0
s manLeu1.NW_012104165v1     1898935 3 +   2316924 AAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1772974 3 -   3067355 AAC
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            165452 0 -    375362 C
e otoGar3.GL873742           1479686 0 -   2232465 C
e aotNan1.NW_018494050v1      103913 148 -    285216 I
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171325339 229 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=33902.000000
s hg38.chr6_GL000254v2_alt     68100 7 +   4827813 aaaacaa
s panTro5.chr6              29038663 7 + 175400573 aaaacaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282789 7 + 173848474 aaaacaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081934 7 +   6154872 aaaacaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29225072 7 + 172585720 aaaacaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28913239 7 - 170955103 aaaacaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1891080 7 -   2996164 aaaacaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776688 7 -   2157725 aaaacaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28230997 7 -  71996105 aaaacaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1898938 7 +   2316924 AAAACAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1772977 7 -   3067355 GAAACAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171325568 7 - 171630274 ATCATAG
i calJac3.chr4             I 229 C 0
e saiBol1.JH378348            165452 0 -    375362 C
e otoGar3.GL873742           1479686 0 -   2232465 C
e aotNan1.NW_018494050v1      103913 148 -    285216 I
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=438926.000000
s hg38.chr6_GL000254v2_alt     68107 79 +   4827813 aacaaaaTGGGAGCGAACGCAAGCCGCCTGTGAATGTTCATGCTTTTGTTTGGG-TCAGGAGACCACTGTTGCGATCCTG
s panTro5.chr6              29038670 74 + 175400573 aa-----TGGGAGCGAACGCAAGCCGCCTGTGAATGTTCATGCTTTTGTTTGGG-TCAAGAGACCACTGTTGCGATCCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282796 79 + 173848474 aacaaaaTGGGAGCGAACGCAAGCCGCCTGTGAATGTTCATGCATTTGTTTGGG-TCAAGAGACCACTGTTGCGATCCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5081941 75 +   6154872 aa-----TGGGAGCGAACGCAAGCCGCCTGTGAATGTTCATGCTTTTGTTTGGGTTCAAGAGACCACTGTTGCGATCCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29225079 80 + 172585720 aacaaaaTGGGAGCCAACGCGAGCCGCCTGTAAATGTGCACGCTTTTGTTTGGGTTCAAGAGACCCCTGTTGCTATCCCG
i rheMac8.chr4             C 0 I 3
s macFas5.chr4              28913246 80 - 170955103 aacaaaaTGGGAGCCAACGCGAGCCGCCTGTAAATGTGCACGCTTTTGTTTGGGTTCAAGAGACCCCTGTTGCTATCCCG
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1     1891087 80 -   2996164 aacaaaaTGGGAGCCAACGCGAGCCGCCTGTAAATGTGCACGCTTTTGTTTGGTTTCAAGAGACCCCTGTTGCTATCCCG
i macNem1.NW_012011356v1   C 0 I 3
s cerAty1.NW_012001495v1     1776695 80 -   2157725 aacaaaaTGGGAGCCAACGCGAGCCGCCTGTGAATGTGCACGCTTTTGTTTGGGTTCAAGAGACCCCTGTTACTATCCCG
i cerAty1.NW_012001495v1   C 0 I 3
s chlSab2.chr17             28231004 80 -  71996105 aacaaaaTGGGAGCCAACGCGAGCCGCCTGTGAATGTGCACGCTTTTGTTTGGGTTCAAGAGACCCCTGTTGCTATCCCG
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012104165v1     1898945 80 +   2316924 AACAAAATGGGAGCCAACGCGAGCCGCCTGTGAATGTGCACGCTTTTGTTTGGGTTCAAGAGACCCCTGTTGCTATCCCG
i manLeu1.NW_012104165v1   C 0 I 3
s colAng1.NW_012115566v1     1772984 80 -   3067355 AACAAAATGGGAGCCAATGCGAGCCGCCTGTGAATGTGCAGGCTTTTGTTTGGGTTCAAGAGACCCTTGTTGCTATCCCG
i colAng1.NW_012115566v1   C 0 I 3
s calJac3.chr4             171325575 79 - 171630274 CACAAAATGAGAGCGAATGTGAACCGCCTGTTGATGCTCGCGCTTTTATTTGGGTTCCGGAGACCCC-GCTGAGATTCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            165452 79 -    375362 AACAAAATGGGAGCGAACATGAGCCGCCGGTGTGTGTACAGGCTCTTGTTTGGGTCCAAGAGACCCC-ATTGGGCTCCCG
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1479686 53 -   2232465 ----AAATGGGAGCC-----------CAAGTGAACATGCACGCTTTGGTTCCCACTCAGGAGACCCGG------------
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      103913 148 -    285216 I
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=39298.000000
s hg38.chr6_GL000254v2_alt     68186 5 +   4827813 TTCTT-
s panTro5.chr6              29038744 5 + 175400573 TTCTT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282875 5 + 173848474 TTCTT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5082016 5 +   6154872 TTCTT-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29225162 5 + 172585720 TTCTT-
i rheMac8.chr4             I 3 C 0
s macFas5.chr4              28913329 5 - 170955103 TTCTT-
i macFas5.chr4             I 3 C 0
s macNem1.NW_012011356v1     1891170 5 -   2996164 TTCTT-
i macNem1.NW_012011356v1   I 3 C 0
s cerAty1.NW_012001495v1     1776778 5 -   2157725 TTCTT-
i cerAty1.NW_012001495v1   I 3 C 0
s chlSab2.chr17             28231087 5 -  71996105 TTCTT-
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012104165v1     1899028 5 +   2316924 TTCTT-
i manLeu1.NW_012104165v1   I 3 C 0
s colAng1.NW_012115566v1     1773067 5 -   3067355 TTCTT-
i colAng1.NW_012115566v1   I 3 C 0
s calJac3.chr4             171325654 5 - 171630274 TTCTT-
i calJac3.chr4             C 0 T 8406
s saiBol1.JH378348            165531 5 -    375362 TTCTT-
i saiBol1.JH378348         C 0 I 3
s aotNan1.NW_018494050v1      104061 5 -    285216 TTCTT-
i aotNan1.NW_018494050v1   I 148 C 0
s otoGar3.GL873742           1479739 5 -   2232465 -TCTCC
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=122036.000000
s hg38.chr6_GL000254v2_alt     68191 20 +   4827813 TCCCCCTCGTTACTTTTTTG-
s panTro5.chr6              29038749 20 + 175400573 TCCCCCTCGTTACTTTTTTG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282880 20 + 173848474 TCCCCCTCGTTACTTTTTTG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5082021 20 +   6154872 TCCCCCTCGTTGCTTTTTTG-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29225167 20 + 172585720 TCCCCCTCGTTACTTTTTTG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28913334 20 - 170955103 TCCCCCTCGTTACTTTTTTG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1891175 20 -   2996164 TCCCCCTCGTTACTTTTTTG-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776783 20 -   2157725 TCCCCTTCGTTACTTTTTTG-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28231092 20 -  71996105 TCCCCCTCGTTACTTTTTTG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1899033 20 +   2316924 TCCCCTTCGTTACTTTTTTG-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1773072 20 -   3067355 TCCTCCTCGTTACTTTTTTG-
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            165539 19 -    375362 TCCTCCTCATTTCTTTTTG--
i saiBol1.JH378348         I 3 C 0
s aotNan1.NW_018494050v1      104066 20 -    285216 TCCTCCTCATTTCTTTTTTG-
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479744 19 -   2232465 TCCCCCTC--TCCTTCCCCCG
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171325659 8406 - 171630274 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=1219244.000000
s hg38.chr6_GL000254v2_alt     68211 178 +   4827813 -TCTTCCTTCTGCTGTCGCAATCGCCTTATGTGATGTTGAGGCTCACAGCATAGAGGTTGGAGATAGTTCAAGGCAA---TGCATT-GGAGTACATTTTTACTTACTATATGTGCAG-AAATAGAATAGAAAAA--TGTGAGGAGGC-AGAGGTC--TGTCGCTTGAGA-------------ACTGCCAGAGGGAAACCATC
s panTro5.chr6              29038769 178 + 175400573 -TCTTCCTTCTGCTGTCGCAATCGCCTTATGTGATGATGAGGCTCACAGCATAGAGGTTGGAGATAGTTCAAGGCAA---TGCATT-GGAGTACATTTTTACTTACTATATGTGCAG-AAATAGAACAGAAAAA--TGTGAGGAGGC-AGAGGTC--TGTCGCTTGAGA-------------ACTGCCAGAGGGAAACCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29282900 178 + 173848474 -TCTTCCTTCTGCTGTCGCAATCGCCTTATGTGATGATGAGGCTCACAGCATAGAGGTTGGAGATAGTTCAAGGCAA---TGCATT-GGAGTACATTTTTACTTACTATATGTGCAG-AAATAGAATAGAAAAA--TGTGAGGAGGC-AGAGGTC--TGTCGCTTGAGA-------------ACTGCCAGAGGGAAACCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5082041 178 +   6154872 -TCTTCCTTCTGCTGTCGCAATCGCCTTATGTGATGTTGAGGCCCACAGCATAACGTTTGGAAATAGTTCAAGGCAA---TGCATT-GGAGTACATTTTTACTTACTATATGTGCAG-AAATAGGATAGAAAAA--CGTGAGGAGGC-AGAAGTC--TGTCGCTTCAGA-------------ACTGCCAGAGGGAAACCATC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29225187 178 + 172585720 -TCTTCCTTCTGCTGTCGCAATCGCCTTATGTGACGTTGAGGCTCACAGCATAGAGGTTGGAGATAGTTCGAGGCAA---TGCATT-GGAGTACATTTTTACTCTCTATATGTGCAG-AAATAGGATAGAAAAA--TGTGAGGAGGC-AGAAGAA--TGTTCCTTGAGA-------------ACTGCCAGAGTGAAACCAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28913354 178 - 170955103 -TCTTCCTTCTGCTGTCGCAATCGCCTTATGTGACGTTGAGGCTCACAGCATAGAGGTTGGAGATAGTTCGAGGCAA---TGCATT-GGAGTACATTTTTACTCTCTATATGTGCAG-AAATAGGATAGAAAAA--TGTGAGGAGGC-AGAAGAA--TGTTCCTTGAGA-------------ACTGCCAGAGTGAAACCAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1891195 178 -   2996164 -TCTTCCTTCTGCTGTCGCAATCGCCTTATGTGACGTTGAGGCTCACAGCATAGAGGTTGGAGATAGTTCGAGGCAA---TGCATT-GGAGTACATTTTTACTCTCTATATGTGCAG-AAATAGGATAGAAAAA--TGTGAGAAGGC-AGAAGAA--TGTTCCTTGAGA-------------ACTGCCAGAGTGAAACCATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776803 178 -   2157725 -TCTTCCTTCTGCTGTCGCTATCGCCTTATGTGATGTTGAGGCTCACAGCATAGAGGTTGGAGATAGTTCAAGGCAA---TGCATT-GGAGTACATTTTTACTCTCTATATGTGCAG-AAATAAGATAGAAAAA--TGTGAGGAGGC-AGAAGAC--TGTTGCTTGAAA-------------ACTGCCAGAGTGAAACCATC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28231112 171 -  71996105 -TCTTCCTTCTGCTGTCGCAATCGTCTTATGTGATGTTGAGGCTTACAGCATAGAGGTTGGAGATAGTTCAAGGCAA---TGCACT-GGAGTACATTTTTA--CTCTATATGTGCAG-AAATAGGATAGAAAAA--TGT---GAGGC-AGAAGAC----TTGCTTGAAA-------------ACTGCCAGAGCGAAACCATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1899053 178 +   2316924 -TCTTCCTTCTGCTGTTGCAATCGCCTTATGTGATGTTGAGGCTCACAGCATAGAGGTTGGAGATAGTTCAAGGCAA---TGCATT-GGAGTACATTTTTACTCTCTATATGTGCAG-AAATAAGATAGAAAAA--TGTGAGGAGGC-AGAAGAC--TGTTGCTTGAAA-------------ACTGCCAGAGTGAAACCATC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1773092 178 -   3067355 -TCTTCCTTCTGCTGTCGCAATCGCCTTACGTGATGTTGAGGCTCACAGCATAGAGGTTGGAGATAGTTCAAGGTAA---TGCATT-GGAGTACATTGTTACTCTCTATATGTGCAG-AAATAGGATAGAAAAA--TGTGAGGAGGC-AGAAGAC--TGTTCCTTGAGA-------------ACTAACAGAGTGAAACCATA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171317253 186 - 171630274 -TCTTCCTTCTGCCCTTGCAATCGCCTTAGGTGATGTGGAGGCTCACAGCATAGAGATGGGAGATAAGTGAAGGCAA---CGCATT--------GTTTTTACTCCCCATGTGTGCAG-AAGTGGGATAGAAAAAGTTG--AGGAAAC-AGAAGTCTATGTCGCTTGAGAATTAGGTTTGAGCACTGTCAGAGCAAAAACACC
i calJac3.chr4             T 8406 I 72
s saiBol1.JH378348            165558 196 -    375362 -TCTTCCTTCTGCCC--ACAATCGCCTTAGGTGATGTCCAGGCGCACAACATAGAGATTGGAGACAGTTCAAGGCAATGCCACATTTGGGCCACATTTGTACTCTCTACATGAGCAGAAAATAGGATAGAAAAAAATGTTAGGACGC-AGACGTC--CGTTGCTTGAGAATTAGGACTGAACACTGCCAGAGCAAAATCACC
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104086 192 -    285216 -TCTTCCTTCTGCCGTCACAATTGCCTTAGGTGACGTCGAGGCGCACAACATAGAGATTGGAGACAGTTCGAGGCAA---CGCATT-GGGCCACATTTGTACTCTCTATATGAGCAGAAAATAGGGTAGAAAAA--TGTTAGGAGGC-AGAAGTC--CGTTGCTTGAGAATTAGGATTGAATAGTGCCAGAGCAAAATCACC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479763 186 -   2232465 CTTTTCCTTACA-TCTCTCGGTCACATTAGGTGATGTCAAGGGTCAAAACATAGAGATGAAAGAGAATTCAAGGCAA---TCCTTT-GGTTTGTATTTTTTCTTTCTATGTATGTAG-AAATTGAATAGAAAAA--ATTCAGGGAACTAAAAATG--GATTTCTTGAGAAATAGACTCA---AACACAAAAGTAAAACC---
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=572468.000000
s hg38.chr6_GL000254v2_alt     68389 69 +   4827813 ACTtggaggtgtcggggatcgaacc-gaggcctcatacatgcaaagcatgcgctctaccactgagctaca
s panTro5.chr6              29038947 70 + 175400573 ACTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29283078 70 + 173848474 ACTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5082219 70 +   6154872 ACTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctaca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29225365 70 + 172585720 ACTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28913532 70 - 170955103 ACTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1891373 70 -   2996164 ACTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctaca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1776981 70 -   2157725 ACTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctaca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28231283 70 -  71996105 ACTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctaca
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012104165v1     1899231 70 +   2316924 AGTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctaca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1773270 70 -   3067355 ACTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctaca
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            165754 70 -    375362 AGCtggaggtgctggggattgaacccaggacctcatacatgcaaagcatgcgctctaccactgagctaca
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104278 70 -    285216 AGCtggaggtgccggggatcgaacccggggcctcatacatgcaaagcatgcgctctacggctgagctaca
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479949 68 -   2232465 --Ttggaggtgccggggatcgaacccggggcctcatacatgcaaagcatgcgctctaccactgagctaca
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171317439 72 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=236868.000000
s hg38.chr6_GL000254v2_alt     68458 60 +   4827813 cccccTTACT-ATAACACCCATTTGTAATAATTTTCAGGAGGTAACTTTCATTTTCTG--AGA----
s panTro5.chr6              29039017 60 + 175400573 cccccTTACT-ATAAGACCCATTTGTAATAATTTTCAGGAGGTAACTTTCATTTCCTG--AGA----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29283148 60 + 173848474 cccccTTACT-ATAAGACCCATTTGTAATAATTTTCAGGAGGTAACTTTCATTTCCTG--AGA----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5082289 60 +   6154872 cccccTTACT-ATAAGACCCATTGGTAATCATTTTCAGGAGGTAACTTTCATTTCCTG--AGA----
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29225435 41 + 172585720 cccccTTGCTAAAAAGGCCGGTTTGTAATAATTTCCAGGAG--------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28913602 41 - 170955103 cccccTTGCTAAAAAGGCCGGTTTGTAATAATTTCCAGGAG--------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1891443 41 -   2996164 cccccTTGCTAAAAAGGCCGGTTTGTAATAATTTCCAGGAG--------------------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1777051 61 -   2157725 cccccTTGCTTAAAAGGTCTGTTTGTAATAATTTCCAGGAGGTGACTTTCACATCCTG--ACC----
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28231354 63 -  71996105 ccccCTTGCTAAAAAGGCCTGTTTGTAATAATTTCCAGGAGGTGACTTTCGTATCCTGACACT----
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012104165v1     1899301 61 +   2316924 cccccTTGCTTAAAAGGTCTGTTTGTAATAATTTCCAGGAAGTGACTTTCACATCCTG--ACC----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1773340 63 -   3067355 cccccTTGCTAAAAAGACCTGTTTGTAATAATTTCCAGGAGGTGACTTTCATATCCTGACACT----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171317511 59 - 171630274 ccccCTTCCT-GATACGCCCTTT-GTAGTAATTTTCGGGGAGTAACTTTGGTTTTCTG--AGA----
i calJac3.chr4             I 72 I 952
s saiBol1.JH378348            165824 60 -    375362 cccccTTCCC-CAAAGGCCTTTTGGTAGTAACTTTCAGGAGGCAACTTTCATTTGCTG--AGC----
i saiBol1.JH378348         C 0 I 2
s aotNan1.NW_018494050v1      104348 60 -    285216 cccccTTCCT-GAAAGGCCTTTTTGTAGTAATTTTCAGGAGGCAGCTTTCATTTTCTG--AGC----
i aotNan1.NW_018494050v1   C 0 I 2
s otoGar3.GL873742           1480017 63 -   2232465 cccccTTCTTTCAGAGGTTGTTTGTTAGCATTTGTCTGGAA--GACTTACCTTCTTAG--ACTTTGG
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=513464.000000
s hg38.chr6_GL000254v2_alt     68518 82 +   4827813 CTCCGTGAGCATGCTGGTAATAGTGGTCAGTACCATAGAGCGTGGAGAGCTACTCTGAGCAGGAGATACTTG-GT---ACTAATGG
s panTro5.chr6              29039077 82 + 175400573 CTCCGTGAGCATGCTGGTAGTAGTGGTCAGTACCATAGAGCGTGGAGAGCTACTCTGAGCAGGAGATACTTG-GT---ACTAATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29283208 82 + 173848474 CTCCGTGAGCATGCTGGTAGTAGTGGTCAGTACCATAGAGCGTGGAGAGCTACTCTGAGCAGGAGATACTTG-GT---ACTAATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5082349 82 +   6154872 CTCCGTGAGCATGCTGGTAGTAGTGGTCAGTACTATAGACCGTGGAGAGCTACTCTGAGCAGGAGATACTTG-GT---AATAACGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29225476 78 + 172585720 ----GTGAGTATGCTGGTAGTAGTGGTCAGTACTATAGAGCATGGAGAGCTACTCTGAGCAGGAGATATTTG-GT---ACTAATGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28913643 78 - 170955103 ----GTGAGTATGCTGGTAGTAGTGGTCAGTACTATAGAGCATGGAGAGCTACTCTGAGCAGGAGATATTTG-GT---ACTAATGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1891484 75 -   2996164 ----GTGAGTATGCTG---GTAGTGGTCAGTACTATAGAGCATGGAGAGCTACTCTGAGCAGGAGATATTTG-GT---ACTAATGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1777112 82 -   2157725 CTCCGTGAGTATGCTGGTAGTAGTGGTCAGTACTATAGAGCATGGAGAGCTACTCTGAGCAGGAGATATTTG-GT---GCTAATGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28231417 82 -  71996105 CTCCGTGAGTATGCTGGTAGTAGTGGTCAGTACTATAGAGCGTGGAGAGCTACTCTGAGCAGGAGATATTTG-GT---ACTAATGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1899362 82 +   2316924 CTCCGTGAGTATGCTGGTAGTAGTGGTCAGTACTATAGAGCATGGAGAGCTACTCTGAGCAGGAGATATTTG-GT---GCTAATGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1773403 82 -   3067355 CTCCCTGAGTATGCTGGTAGTAGTGGTCAGTACTATAGAGCGTGGAGAGCTACTCTGAGCAGGAGATATTTG-GT---ACTAATGG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            165886 79 -    375362 CTCCAGGGACATGCTGGTGCTAGTGATCAGTATTTTGGAGCATGGTAA------CTGAGCAGGAGATACTTG-CTCACATTCGTGG
i saiBol1.JH378348         I 2 C 0
s aotNan1.NW_018494050v1      104410 81 -    285216 CTCCATGAACATGCTGGTAGTAGTGGTCAGTATTTTGGAGCATGGAGG-CTGCTCTGAGCAGGAGATACTTG-GT---ATTAATGT
i aotNan1.NW_018494050v1   I 2 C 0
s otoGar3.GL873742           1480080 83 -   2232465 TTCTGTGAACTTTTTGGTGGTAGTGGTCAGCACCAAGGAGCATTGGCAGCCACGATGGGTAGACGATGATCACGT---ACCAGTAG
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171317570 952 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=1181276.000000
s hg38.chr6_GL000254v2_alt     68600 162 +   4827813 GGGATACAGATTCT----------------TTAGAATACTGTGTAGGACTTGAAACG-AAAAACGAAAGATTAGAAAAGTGTCAGATAATAACCACAAGAAGTTTCCTTTGTGGCCTGAAGACGTTGAGTTCTTAGGGTCTG---CTTCTATTATGCTTGGCAAG-AATCAAGTTCTGATTTT
s panTro5.chr6              29039159 162 + 175400573 GGGATACAGATTCT----------------TTAGAATACTGTGTAGGACTTGAAACG-AAAAACGAAAGATTAGAAAAGTGTCAGATAATAACCACAAGAAGTTTCCTTTGTGGCCTGAAGACGTTGAGTTCTTAGGGTCTG---CTTCTATTATGCTTGGCAAG-AATCAAGTTCTGATTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29283290 162 + 173848474 GGGATACAGATTCT----------------TTAGAATACTGTGTAGGACTTGAAACG-AAAAACGAAAGATTAGAAAAGTGTCAGATAATAACCACAAGAAGTTTCCTTTGTGGCCTGAAGACGTTGAGTTCTTAGGGTCTG---CTTCTATTATGCTTGGCAAG-AATCAAGTTCTGATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5082431 163 +   6154872 GGGATACAGATTCT----------------TTAGAATACTGTGTAGGACTTGAAACGAAAAAACGAAAGATTAGAGAAGTGTCAGATAATAACCGCAAGAAGTTTCCTTTGTGGCCTGAAGACGTTGAGTTCTTAGGGTCTC---CTTCTATTATGCTTGGCAAG-AATCAAGTTCTGATTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29225554 156 + 172585720 GGGATACAGATTCT----------------TTAGAATACTGTGTAGGGCTTGAAACG-AAAAACAAAAGA-TAGAAAAGTGTCAGATAATAACCACAAGAAGTTTCCATTG-----TCAAGACATTGAGTTCTTCGGGTCTC---CTTCTATTATGCTTGGCAAG-AATCAAGTTCTGGTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28913721 156 - 170955103 GGGATACAGATTCT----------------TTAGAATACTGTGTAGGGCTTGAAACG-AAAAACAAAAGA-TAGAAAAGTGTCAGATAATAACCACAAGAAGTTTCCATTG-----TCAAGACATTGAGTTCTTCGGGTCTC---CTTCTATTATGCTTGGCAAG-AATCAAGTTCTGGTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1891559 156 -   2996164 GGGATACAGATTCT----------------TTAGAATACTGTGTAGGGCTTGAAACG-AAAAACAAAAGA-TAGAAAAGTGTCAGATAATAACCACAAGAAGTTTCCATTG-----TCAAGACATTGAGTTCTTCGGGTCTC---CTTCTATTATGCTTGGCAAG-AATCAAGTTCTGGTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1777194 156 -   2157725 GGGATACAGATTCT----------------TTAGAACACTGTGTAGGGCTTGAAACG-AAAAACAAAAGA-TAGAAAAGTGTCAGACAATAATCACAAGAAGTTTCCATTG-----TCAAGACATTGAGTTCTTCGGGTCTC---CTTCTATTATGCTTGGCAAG-AATCAAGTTCTGGTTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28231499 161 -  71996105 GGGATACAGATTCT----------------TTAGAATGCTGTGTAGGGCTTGAAACG-AAAAACAAAAGA-TAGAAAAGTGTCAGATAATAACCACAAGAAGTTTCCATTGTGGCTTCAAGACATTGAGTTCTTCGGGTCTC---CTTCTATTATGCTTGGCAAG-AATCAAGTTCTGGTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1899444 156 +   2316924 GGGATACAGATTCT----------------TTAGAATACTGTGTAGGGCTTGAAACG-AAAAACAAAAGA-TAGAAAAGTGTCAGATAATAATCACAAGAAGTTTCCATTG-----TCAAGACATTGAGTTCTTCGAGTCTC---CTTCTATTATGCTTGGCAAG-AATCAAGTTCTGGTTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1773485 161 -   3067355 GGGGTACAGATTCT----------------TTAGAATACTGTGTAGGGCTTGAAACG-AAAAACAAAAGA-TAGAAAAGTGTCAGATAATAACCACAAGAAGTTTCCATTGTGGCTTCAAGACATTGAGTTCTTCGGGTCTC---CTTCTATTATGCTTGGCAAG-AATCAAGTTCTAGTTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171318522 165 - 171630274 GGGATGCAGAGTCT----------------TTAGAATACTGCATAGTACTTGAAATG-GAACTCAAAATATTAGAAAAGTGTCAGATAACTGCCACAAGATGTTTCCAT-GTGGCTGTAAAACGTTGAGCTGTTAGGATCTCCTTCTTCTATTATGCTTGACAAGAAATCAACTTCTGGTTTT
i calJac3.chr4             I 952 C 0
s saiBol1.JH378348            165965 158 -    375362 ----GACACATTCT----------------TCAGAATACTGCGTAGGACTTGAAACA-AAAAGCAGAAGACTGGAAAACTGTCAGATAATAACCATAAGAAGTTTCCATCGTGGCTTCAAGACATTGAGTTCCTAGGGTCTC---CTTCTATTATGCTTGGAAAG-AATCAACTTCTGGTTTT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104491 157 -    285216 GAGATACACATTCT----------------TCAGAATACTGCGTAGGACTTGA------AAAGCAAAAGACTGGAAAAGTGTCAGATAATAACCACCAGAAGTTTCCATCGTGGCTTCAAGACGTTCAGTTCTTAGGGTCTC---CTTCTATTATGCTTGGAAAG-AATCAACTTCTGGTTTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480163 178 -   2232465 GAAACACAAAACTTGAAATGGAAGGTAAAACTTGAATACTACATAAAACTTGAAATG-GAAGGTAAAAGATTGAAAACGTGTCAAATAACAACCAAAAGAAGTTCCCTTTGTGGCTTTGAAATGTTAAGTTGTTAGATTCTA---CTTCTGTT-TGCTTAGCAAGGAATCAGGTTCTGGTTTT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=24193.000000
s hg38.chr6_GL000254v2_alt     68762 4 +   4827813 -CGTT
s panTro5.chr6              29039321 4 + 175400573 -CGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29283452 4 + 173848474 -CGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5082594 4 +   6154872 -CGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29225710 4 + 172585720 -CGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28913877 4 - 170955103 -CGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1891715 4 -   2996164 -CGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1777350 4 -   2157725 -CGTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28231660 4 -  71996105 -CGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1899600 4 +   2316924 -CGTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1773646 4 -   3067355 -CGTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            166123 4 -    375362 -CGTT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104648 4 -    285216 -CGTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480341 4 -   2232465 CTAT-
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171318687 0 - 171630274 C
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=1118804.000000
s hg38.chr6_GL000254v2_alt     68766 146 +   4827813 TCTTTTGATTTCTTCCAGATATAACACAAAGCCATTGAAATTCAGCCTTTTCCTGCCTAAAACGCTTCATAATTGT--TGTTTGCTCAGTCGGAATATCAAAGGTAAGA-TTTGATAGAGGAAAGCCATGATCA--GAAGAAAACCTGAGA
s panTro5.chr6              29039325 146 + 175400573 TCTTTTGATTTCTTCCAGATATAACACAAAGCCATTGAAATTCAGCCTTTTCCTGCCTAAAACTCTTCATAATTGT--TGTTTGCTCAATCGGAATATCAAAGGTAAGA-TTTGATAGAGGAAAGCTATAATCA--GAAGAAAACCTGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29283456 146 + 173848474 TCTTTTGATTTCTTCCAGATATAACACAAAGCCATTGAAATTCAGCCTTTTCCTGCCTAAAACGCTTCATAATTGT--TGTTTGCTCAATCGGAATATCAAAGGTAAGA-TTTGATAGAGGAAAGCTATAATCA--GAAGAAAACCTGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5082598 146 +   6154872 TCTTTTGATTTCTTCCAGATATAACACAAAGCCATTGAAATTCAGCCTTTTCCTGCCTAAAACGCTTCATAATTGT--TGTTTGCTCAATCGGAATATCAAAGGTAAGA-TTTGATAGAGGAAAGCCATAATCA--GAAGAAAACCTGAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29225714 150 + 172585720 TCTTTCGACTTCTTCCAGATATGACAGAAAGCCATTGAAATTCAGCCTTTCCCTGCCTAAAACGCTTCATATTTGTTGTGTTTAATCAGTCGGAATATC-AAGGTAAGATTTTGATGGAGGAAAGCCATAATCAAGAAGAAAAACCTGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28913881 145 - 170955103 TCTTTCGACTTCTTCCAGATATGACAGAAAGCCATTGAAATTCAGCCTTTCCCTGCCTAAAACGCTTCATATTTGT--TGTTTACTCAGTCGGAATATC-AAGGTAAGA-TTTGATGGAGGAAAGCCATAATCA--GAAGAAAACCTGAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1891719 145 -   2996164 TCTTTCGACTTCTTCCAGATATGACAGAAAGCCATTGAAATTCAGCCTTTCCCTGCCTAAAACGCTTCATATTTGT--TGTTTACTCAGTCGGAATATC-AAGGTAAGA-TTTGATGGAGGACAGCCATAATCA--GAAGAAAACCTGAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1777354 146 -   2157725 TCTTTTGATTTCTTCCAGATATGACAAAAAGCCATTGAAATTCAGCCTTTCCCTGCCTAAAACGCTTCATATTTGT--TGTTTACTCAGTCGGAATATCAAAGGTAAGA-TTTGATGGAGGAAAGCCATAATCG--GAAGAAAACCTGAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28231664 146 -  71996105 TCTTTTGATTTCTTCCAGATATGACAGAAAGCCATTGAAATTCAGCCTTTCCCTGCCTAAAATGCTTCATATTTGT--TGTTTACTCAGTCGGAATATCAAAGGTAAGA-TTTGATGGAGGAAAGCCATAATCA--GAAGAAAACCTGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1899604 146 +   2316924 TCTTTTGATTTCTTCCAGATATGACAGAAAGCCATTGAAATTCAGCCTTTCCCTGCCTAAAACGCTTCATATTTGT--TGTTTACTCAGTCGGAATATCAAAGGTAAGA-TTTGATGGAGGAAAGCCATAATCG--GAAGAAAACCTGAGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1773650 146 -   3067355 TCTTTTGATTTCTTCCAGATATGACAGAAAGCCATTGAAATTCAGCCTTTCCCTGTCTAAAACGCTTCATATTTGT--TGTTTACTCAGTCGGAATATCAAAGGTAAGA-TTTGAAGGGGGAAAGTCATAATCA--GAAGAAAACCTGAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171318687 146 - 171630274 TCATTCAATTTCTCCCAGAGATGACACAAAGCTATTGAAATTCAGCTGTTTCCTACTTAAAATGCTTCATATTTGT--TGTTAACTCAGTCAGAAGACTAAAGGTTAGA-TTTGATTGAGGAAAGTCACAGTCA--GAAGAAAACTTAGgg
i calJac3.chr4             C 0 I 9438
s saiBol1.JH378348            166127 146 -    375362 TCTTTTTATTTCTTCCAGATATGACAGAAAGCCATTGAAATTTGGACTTTCCCTGCCTAAAATGCTTCATATTTGT--TGTTTACTCAATCTGAATATTAAAGGTAAGA-TTTGATGGAGGAAAGCCACAATCA--GAAGAAAACCTGAGA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104652 146 -    285216 TCTTTTGATTTCTTCCAGATATGACACAAAGCCATTGAAATTCGGCCTTTCTCTGCCTAAAACACTTCATATTTGT--TGTTTACTCAATCTGAATATTAAGGGTAAGA-TTTGATGGAGGAAAGCCACAATCA--GAAGAACATCTGAGA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480345 115 -   2232465 TCTTTTGATTTCTCCCAG----GACAGATGGCTATTAAAATTTA-----------------------CATATT-----TGTTTTCTCAATCAGAATATTAATGGACAGA-TTTGATGCCAGACAGCCATCATCA---AAGAAAACCTGAGA
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=199771.000000
s hg38.chr6_GL000254v2_alt     68912 33 +   4827813 GCGG-TGCACTCAACATTTTTTCACAGGGGTCCt
s panTro5.chr6              29039471 33 + 175400573 GCGG-TGCACTCAACATTTTTTCACAGGGGTCCt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29283602 33 + 173848474 GCGG-TGCACTCAACATTTTTTCACAGGGGTCCt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5082744 33 +   6154872 GCGG-TACACTCAACATTTTTTCATAGGGGTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29225864 34 + 172585720 GCGAGGGCACTCAGCATGTTTTCATAAGGGTCCT
i rheMac8.chr4             C 0 I 54882
s macFas5.chr4              28914026 33 - 170955103 GCGA-GGCACTCAGCATGTTTTCATAAGGGTCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1891864 33 -   2996164 GCGA-GGCACTCAGCATGTTTTCATAAGGGTCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1777500 33 -   2157725 GCGA-GGCACTCAGCATGTTTTCATAAGGGTCCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28231810 33 -  71996105 GCGA-GGCACTCAGCATGTTTTCATAAGGGTCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1899750 33 +   2316924 GCGA-GGCACTCAGCATGTTTTCATAAGGGTCCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1773796 33 -   3067355 GCGA-GACACTCAGCATGTTTTCATAAGGGTCCC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            166273 33 -    375362 GGGA-TGCACTCAGTATTTTTTCATAAGGGTCCC
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104798 33 -    285216 GGGA-TGCACTCAGTATTTTTCCATAAGGGTCCC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480460 33 -   2232465 AATA-TGCATTCAATATTTCATTATAAGACTCTT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=808467.000000
s hg38.chr6_GL000254v2_alt     68945 136 +   4827813 tagctggcgtggtgtcttactcctgtactcaca---actccagaggctgaggcacgaggatcgcttgaacttgggagttagcgattgtagggagctatgattgcaccactaccctcgagcccggacaatggagtgagaA
s panTro5.chr6              29039504 136 + 175400573 tagctggcgtggtgtcttactcctgtactcaca---actccagaggctgaggcacgaggatcgcttgaactcgggagttagcgattgtagggagctatgattgcaccactaccctcgagcccggacaatggagtgaCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29283635 136 + 173848474 tagctggcgtggtgtcttactcctgtactcaca---actccagaggctgaggcacgaggatcgcttgaactcgggagttagcgattgtagggagctatgattgcaccactaccctcgagcccggacaatggagtgaCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5082777 139 +   6154872 TAGTTggcgtggtgtgttactcctgtactcacagctactccagaggctgaggcacgaggatcgcttgaactcaggagttggcgattgtagggagctatgattgcgccactaccctcgagcccggacaatggagtgagaA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29280780 139 + 172585720 tagctggtgtggcgtcttatgcctgtactcacaggtactccagaggctgaggcgggaggatggcttgagctcaggagttggtggttgtagcgagctatgattgcgccactgccctccagccttggcaacagagagggaa
i rheMac8.chr4             I 54882 T 15554
s macFas5.chr4              28914059 139 - 170955103 tagctggcgtggtgtcttaggcctgtacccacagctgctccagaggttgaggcgggaggatggcttgagctcgggagttggtgattgtagggagctataattacgccactaccctcgagcccgggcaatggagtgagaA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1891897 139 -   2996164 tagctggcgtggtgtcttaggcctgtacccacagctactccagaggttgaggcgggaggatggcttgagctcgggagttggtgattgtagggagctataattacgccactaccctcgagcccgggcaatggagtgagaA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1777533 139 -   2157725 tagctggcgtggtgtcttaggcctgtactcacagctactccagaggttgaggcgggaggatggcttgagttcgggagttggtgattgtagggagctatgattacgccactaccctcgagcccgggcaacggagtgagaA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28231843 139 -  71996105 TATCTggtgtggtgtcttaggcctgtactcacagctactccagaggttgaggcgggaggatggcttgagctcgggagttggtgattgtagggagctatgattacgccactaccctcgagcccgggcaacggagcgagaA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1899783 139 +   2316924 tagctggcgtggtgtcttaggcctgtactcacagctactccagaggttgaggcgggaggatggcttgagcttgggagttggtgattgtagggagctatgattacgccactaccctcgagcccgggcaacggagtgagaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1773829 139 -   3067355 tagctggcgtggtgtcttacgcctgtactcacagctactccagaggtcgaggcgggaggatggcttgagctcaggagttggtggttgtagggagctatgattgcgccactaccctcgagcccgggctacgaagtgagaA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            166306 139 -    375362 TAGCTggcgtggcatctcactcctgaactcacagctactccagaggctgaggcacaaggatctcttaagctcgggggttggtggttgcagggagctatgactgtgccactgccctccagcctgggcaatggagtgagaA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104831 139 -    285216 TGGTTggcgtggcctctcacacctgaactcacagctactccagaggctgaggcacgaggatcgcttgagctcgggggttggtgattgtacggagctacgactgtgccactgccctccagcctgggcaacggagtgagaA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480493  72 -   2232465 -------------TTCTTTTTAATAT-----------------------AGGTGTGCAGATT------------GAGTTATCTAATTTAGGAGGCTCTGCTT-----ATTGTCCT--------------GAAGAGAGAT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=36299.000000
s hg38.chr6_GL000254v2_alt     69081 16 +   4827813 aagcaa----gcaagcaagc
s panTro5.chr6              29039640 16 + 175400573 aagcaa----gcaagcaagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29283771 16 + 173848474 aagcaa----gcaagcaagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5082916 12 +   6154872 ----AA----GCAAGCAAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28914198 12 - 170955103 ----AG----GCAAGCAAGC
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1     1892036 12 -   2996164 ----AG----GCAAGCAAGC
i macNem1.NW_012011356v1   C 0 I 56
s cerAty1.NW_012001495v1     1777672 12 -   2157725 ----AG----gcaagcaagc
i cerAty1.NW_012001495v1   C 0 I 8
s chlSab2.chr17             28231982 12 -  71996105 ----AG----GCAAGCAAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1899922 16 +   2316924 ----aggcaagcaagcaagc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1773968 12 -   3067355 ----AG----GCAAGCAAGC
i colAng1.NW_012115566v1   C 0 I 4
s saiBol1.JH378348            166445 11 -    375362 ----AA----GCAAGCAAA-
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104970 11 -    285216 ----AA----GCAAGCAAA-
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480565  7 -   2232465 --------TCATAAG-----
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I
e rheMac8.chr4              29280919 15554 + 172585720 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=102109.000000
s hg38.chr6_GL000254v2_alt     69097 31 +   4827813 aagcaagAGAAAGTgggagtgagggacggag
s panTro5.chr6              29039656 31 + 175400573 aagcaagAGAAAGTgggagtgagggacggag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29283787 31 + 173848474 aagcaagAGAAAGTgggagtgagggacggag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5082928 31 +   6154872 Aagcaagagaaagtgggagtgagggagggag
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28914213 24 - 170955103 -------agaaagcgggagtgagggagtaag
i macFas5.chr4             I 3 I 34
s cerAty1.NW_012001495v1     1777692 31 -   2157725 aagcaagAGAAAGTgggagtgagggagtaag
i cerAty1.NW_012001495v1   I 8 I 16
s chlSab2.chr17             28231994 29 -  71996105 AAGCAAGAGAAAGTGGGA-Tgagggagtaa-
i chlSab2.chr17            C 0 I 33
s manLeu1.NW_012104165v1     1899938 31 +   2316924 aagcaagaaaaagtgggagtgagggagtaag
i manLeu1.NW_012104165v1   C 0 I 36
s colAng1.NW_012115566v1     1773984 27 -   3067355 ----AAGAGAAAGTGGGAGTGAGGGAGTAAG
i colAng1.NW_012115566v1   I 4 I 41
s saiBol1.JH378348            166456 28 -    375362 ---CGAGAGAAAGTTggaaggagggaggaag
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104981 26 -    285216 -----GGAGAAAGTgggaaggagggagggag
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480572 21 -   2232465 ----------GTGTGGGAGTAAAGGACAGTT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I
e macNem1.NW_012011356v1     1892048 56 -   2996164 I
e rheMac8.chr4              29280919 15554 + 172585720 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=56700.000000
s hg38.chr6_GL000254v2_alt     69128 13 +   4827813 ggagggaaaga-gg
s panTro5.chr6              29039687 13 + 175400573 ggagggaaaga-gg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29283818 14 + 173848474 ggagggaaagaggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5082959 13 +   6154872 ggagggaaaga-gg
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28914271 13 - 170955103 ggaaggaaaga-aa
i macFas5.chr4             I 34 C 0
s macNem1.NW_012011356v1     1892104 13 -   2996164 ggaaggaagga-aa
i macNem1.NW_012011356v1   I 56 C 0
s cerAty1.NW_012001495v1     1777739 13 -   2157725 ggcagaaaaga-gg
i cerAty1.NW_012001495v1   I 16 I 20
s chlSab2.chr17             28232056 13 -  71996105 ggaaggaaaga-aa
i chlSab2.chr17            I 33 C 0
s manLeu1.NW_012104165v1     1900005 13 +   2316924 ggaaggaaaga-aa
i manLeu1.NW_012104165v1   I 36 C 0
s colAng1.NW_012115566v1     1774052 13 -   3067355 ggaaggaagga-ag
i colAng1.NW_012115566v1   I 41 C 0
s saiBol1.JH378348            166484 13 -    375362 gaagggaggga-ag
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      105007 13 -    285216 gaagggaggga-ag
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480593 13 -   2232465 TCAGGGAAGGA-GA
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I
e rheMac8.chr4              29280919 15554 + 172585720 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=4591629.000000
s hg38.chr6_GL000254v2_alt     69141 720 +   4827813 gaaggaaggggggaaggaagg------------gaga----aaggaaggaaggaagga-gaa----agagggaggaagggaaggaaggaaaggaga--gagagagag--aagaagacgggaggtgag-----gggagggaATTCATAAGGCATAAATGAAAACCAGCTTTGGGGGTGGAGATGAGGGTTGAATTATGAGAGTAAGACGAAAGATAAATAGAAACAGGATTGAAGAGTAGTTCAG--AAAAAC-AAACATGCTATTGCCAAAGACAAGCAGGCACAGAAAAGGGGAGGTTTT---AACAACTCTTTCAGGAATGGGAGAAAGATTGAAAGATGGAGA--AGATGAGTTAGTTTGGCTCATGCTAAATTTAAAATATCTGTGGGGCACGCCTGTGAGGATATTACACAGAGAACTCAGGCAATTAACTCCGTCTCCAGCCTGGGGTTTGTAAGC-ATTAGTAGTAGTAGACACATTACATGG-AGGTGGATAAAGACTAAAAAGTGTACTTTGAGATATGGAAATTACAAACCTATTCGTGATATTTGTAGGCAACAAACAAGTTTTCTTCTAACTAGTTCTCGAATCTTGGGACTTATCACGG-TGAGACTGGATTCTTTGAACTATATAAGAAGATGAGAAGAAAACCCATTTCTCGGAACCAAATTTCTGGTGACGATTAACTCTTTCTCATTCTGGTTTGCCCATATATGAGCCTTTGCCAATGTTAATAAAATAACATTGATCCATTT
s panTro5.chr6              29039700 715 + 175400573 gaaggaagtggg-aaggaagg------------gaga----aaggaaggaagga-----gaa----agagagaggaagggaaggaaggaaaggaga--gagagagag--aaggagacgggaggtgag-----gggagggaATTCATAAGGCATAAATGAAAACCAGCTTTGGGGATGGAGATGAGGGTTGAATTATGAGAGTAAGACGAAAGATAAATAGAAACAGGATTGAAGAGTAGTTCAG--AAAAAC-AAACATGCTATTGCCAAAGACAAGCAGGCACAGAAAAGGGGAGGTTTT---AACAACTCTTTCAGGAATGGGAGAAAGATTGAAAGATGGAGA--AGATGAGTTAGTTTGGCTCATGCTAAATTTAAAATATCTGTGGGGCACGCCTGTGAGGATATTACACAGAGAACTCAGGCAATTAACTCCGTCTCCAGCCTGGGGTTTGTAAGC-ATTAGTAGTAGTAGACACATTACATGC-AGGTGGATAAAGACTAAAAAGTGTACTTTGAGATATGGAAATTACAAACCTATTCGTGATATTTGTAGGCAACAAACAAGTTTTCTTCTAACTAGTTCTCGAATCTTGGGACTTATCATGG-TGAGACTGGATTCTTTGAACTATATAAGAAGATGAGAAGAAAACCCATTTCTCGGAACCAAATTTCTGGTGACGATTAACTCTTTCTCATTCTGGTTTGCCCATATATGAGCCTTTGCCAGTGTTAATAAAATAACATTGATCCATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29283832 716 + 173848474 gaaggaaggggggaaggaagg------------gaga----aaggaaggaagga-----gaa----agagagaggaagggaaggaaggaaaggaga--gagagagag--aaggagacgggaggtgag-----gggagggaATTCATAAGGCATAAATGAAAACCAGCTTTGGGGATGGAGATGAGGGTTGAATTATGAGAGTAAGACGAAAGATAAATAGAAACAGGATTGAAGAGTAGTTCAG--AAAAAC-AAACATGCTATTGCCAAAGACAAGCAGGCACAGAAAAGGGGAGGTTTT---AACAACTCTTTCAGGAATGGGAGAAAGATTGAAAGATGGAGA--AGATGAGTTAGTTTGGCTCATGCTAAATTTAAAATATCTGTGGGGCACGCCTGTGAGGATATTACACAGAGAACTCAGGCAATTAACTCCGTCTCCAGCCTGGGGTTTGTAAGC-ATTAGTAGTAGTAGACACATTACATGC-AGGTGGATAAAGACTAAAAAGTGTACTTTGAGATATGGAAATTACAAACCTATTCGTGATATTTGTAGGCAACAAACAAGTTTTCTTCTAACTAGTTCTCGAATCTTGGGACTTATCATGG-TGAGACTGGATTCTTTGAACTATATAAGAAGATGAGAAGAAAACCCATTTCTCGGAACCAAATTTCTGGTGACGATTAACTCTTTCTCATTCTGGTTTGCCCATATATGAGCCTTTGCCAGTGTTAATAAAATAACATTGATCCATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5082972 712 +   6154872 gaaggaaggggg-aaggaagg------------gaga----aaggaaggaagga-----agg----agaaagagcaagggaaggaaggaaaggaga--gagagag-----aggagacgggaggtgag-----gggagggaATTCATAAGGCATAAATGAAAAGCAGCTTTGGGGGTGGAGATGAGGGTTGAATTATGAGAGTAAGATGAAAGATAAATAGAAACAGGATTGAAGAGTAGTTCAG--AAAAACAAAACATGCTATTGCCAAAGACAAGCAGGCGCAGAAAAGGGGAGGTTTT---AACAACTCTTTCAGGAATGGGAGAAAGATTGAAAGATGGAGA--AGATGAGTTAG-TTGGCTCATGCTAAATTTAAAATATCTGTGGGGCATGCCTGTGAGGATATTACACAGAGAACTCAGGCAATTAACTCCGTCTCCAGCCTGGGGTTTGTAAGC-ATTAGTAGTAGTAGACACATTACATGG-AGGTGGATAAAGACTAAAAAGTGTACTTTGAGATATGGGAATTACAAACCTATTCGTGATATTTGTAGGCAACAAACAAGTTTTCTTCTAACTAGTTCTCGAATCTTGGGACTTATCATGG-TGAGACTGGATTCTTTGAACTATATAAGAAGATGAGAAGAAAACCCATTTATCGGAACCAAATTTCTAGTGACGATTAACTCTTTCTCATTCTGGTTTGCCCATATATGAGCCTTTGCCAATGTTAATAAAATAACATTGATCCATTT
i gorGor5.CYUI01015250v1   C 0 I 816
s rheMac8.chr4              29265365 729 + 172585720 gaaggaaggaaagaaggaagg------------aaga----aaggaaggaaggaagga-GAAAGACAGAGGTAgggagggaaggaaggaaag--ga--gagagagagaaaaggagacgggaggtgaggggaggggagggAATTCATAAGGCATAAATGAAAAACAGCTTTGGGGGTGAAGAGGAGGGTTGAATTATGAGAGTAAGATGAAAGATAAATAGAAGTAGGATTGAAGAGTAGTTCAG--AAAAAC-AAACATGCTATTGCCAAAGACAAGCAGGTGCAGAAAGGGAGAGGTTTT---AACAACTCTTTTAGGAATGGGAGAAAGATTGAAAGATGGAGA--AGATGAGTTAGTTTGGCTCACGCTAAATTTAAAGTATCTGTGGGGCACACTTGTGAGGATATTACACAGAGAACTCAGGCAATTAACTCCGTCTCCAGCCTGGGATTTGTAAGC-ATTAGTAGTAGTAGACACATTACATGG-AGGTGAATAAAGACTAAAAAGTGTACTTTGAGATATGGGAATTAGAAACCTATTGGTGATATTTGTAGGCAACAAACAAGTTTGCTCCTAAATAGTTCTGGAATCTTGGGACTTATCATGG-TGAGACTGGGTTCTTTGAACTATATAAGAAGATAAGAAGAAAACCCATTTCCAGGAACGAAATTTCTAGTGACTGTTAACTCTTTCTCATTCTGGTTTGCCCGTATATGAACCTTTGCCAATGTTAATAAAATAACATTGATCCATTT
i rheMac8.chr4             T 15554 C 0
s macFas5.chr4              28914284 731 - 170955103 gaaggaaggaaagaaggaagg------------aaga----aaggaaggaaggaagga-gaaagacagaggtagggagggaaggaaggaaaggaga--gagagagagaaaaggagacgggaggtgaggggaagggagggaATTCATAAGGCATAAATGAAAAACAGCTTTGGGGGTGAAGAGGAGGGTTGAATTATGAGAGTAAGATGAAAGATAAATAGAAGTAGGATTGAAGAGTAGTTCAG--AAAAAC-AAACATGCTATTGCCAAAGACAAGCAGGTGCAGAAAGGGAGAGGTTTT---AACAACTCTTTTAGGAATGGGAGAAAGATTGAAAGATGGAGA--AGATGAGTTAGTTTGGCTCACGCTAAATTTAAAGTATCTGTGGGGCACACTTGTGAGGATATTACACAGAGAACTCAGGCAATTAACTCCGTCTCCAGCCTGGGATTTGTAAGC-GTTAGTAGTAGTAGACACATTACATGG-AGGTGAATAAAGACTAAAAAGTGTACTTTGAGATATGGGAATTAGAAACCTATTGGTGATATTTGTAGGCAACAAACAAGTTTGCTCCTAAATAGTTCTGGAATCTTGGGACTTATCATGG-TGAGACTGGGTTCTTTGAACTATATAAGAAGATAAGAAGAAAACCCATTTCCAGGAACGAAATTTCTAGTGACTGTTAACTCTTTCTCATTCTGGTTTGCCCATATATGAACCTTTGCCAATGTTAATAAAATAACATTGATCCATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1892117 727 -   2996164 gaaagaaggaaggaaggaagg------------aaga----aaggaaggaaggaagga-gaa----agaggtagggagggaaggaaggaaaggaga--gagagagagaaaaggagacgggaggtgaggggaggggagggaATTCATAAGGCATAAATGAAAAACAGCTTTGGGGGTGAAGAGGAGGGTTGAGTTATGAGAGTAAGACGAAAGATAAATAGAAGTAGGATTGAAGAGTAGTTCAG--AAAAAC-AAACATGCTATTGCCAAAGACAAGCAGGTGCAGAAAGGGAGAGGTTTT---AACAACTCTTTTAGGAATGGGAGAAAGATTGAAAGATGGAGA--AGATGAGTTAGTTTGGCTCACGCTAAATTTAAAGTATTTGTGGGGCACACTTGTGAGGATATTACACAGAGAACTCAGGCAATTAACTCCGTCTCCAGCCTGGGATTTGTAAGT-GTTAGTAGTAGTAGACACATTACATGG-AGGTGAATAAAGACTAAAAAGTGTACTTTGAGATATGGGAATTAGAAACCTATTGGTGATATTTGTAGGCAACAAACAAGTTTGCTCCTAAATAGTTCTGGAATCTTGGGACTTATCATGG-TGAGACTGGGTTCTTTGAACTATATAAGAAGATAAGAAGAAAACCCATTTCCAGGAACGAAATTTCTAGTGACTGTCAACTCTTTCTCATTCTGGTTTGCCCATATATGAACCTTTGCCAATGTTAATAAAATAACATTGATCCATTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1777772 735 -   2157725 gaaggaaggaaagaaggaagg------------aagaaaggaaggaaggaaggaagga-gaaagacagaggtagggagggaaggaaggaaaggaga--gagagagaaaaaaggagacgggaggtgaggggaggggagggaATTCATAAGGCATAAATGAAAAACAGCTTTGGGGGTGGAGAGGAGGATTGAATTATGAGAGTAAGACAAAAGATAAATAGAAATAGGATTGAATAGTAGTCCAG--AAAAAC-AAACATCCTATTGCCAAAGACAAGCAGGTGCAGAAAGGGAGAGGTTTT---AACAACTCTTTTAGGAATGGGAGAAAGATTGAAAGATGGAGA--AGATGAGTTAGTTTGGCTCATGCTAAATTTAAAGTATCTGTGGGGCACACTTGTGAGGATATTACACAGAGAACTCAGGCAATTAACTCCATCTCCAGCCTGGGATTTGTAAGC-GTTAGTAGTAGTAGACACATTACATGG-AGGTGAATAAAGACTAAAAAGTGTACTTTGAGATATGGAAATTAGAAGCCTATTCGTGATATTTGTAGGCAACAAACAAGTTTGCTCCTAAATAGTTCTCGAATCTTGGGACTTACCATGG-TGAGACTGGGTTCTTTGAACTATATAAGAAAATAAGAAGAAAACCCATTTCCAGGAACGAAATTTCTAGTGACTGTTAACTCTTTCTCATTCTGGTTTGCCCATATATGAACCTTTGCCAATGTTAATAAAATAACACTGATCCATTT
i cerAty1.NW_012001495v1   I 20 C 0
s chlSab2.chr17             28232069 741 -  71996105 gtaggaaggaaagaaggaaggaaggaaggaagaaagg----aaggaaggaaggaagga-gaaagacagaggtagggagggaaggaaggaaaggaga--ga--gagagaaaaggagatgggaggtgaggggaggggagggaATTCGTAAGGCATAAATGAAAAACAGCTTTGGGGGTGGAGAGGAGGGTTGAATTATGAGAGTAAGACGAAAGACAAATAGAAATAGGATTGAAGAGTAGTTCAG--AAAAAC-AAACATGCTATTGCCAAAGACAAGCAGGTGCAGAAAGGGAGAGGTTTT---AACAACTCTTTTAGGAACGGGAGAAAGATTGAAAGATGGAGA--AGATGAGTTAGTTTGGCTCATGCTAAATTTAAAATATCTGTGGGGCACACGTGTGAGGATATTACACAGAGAACTCAGGCAATTAACTCCATCTCCAGCCTGGGATTTGTAAGC-GTTAGTAGTAGTAGGCACATTACATGG-AGGTGAATAAAGACTAAAATGTGTACTTTGAGATATGGGAATTAGAAACCTATTCGTGATATTTGCAGGCAACAAACAAGTTTGCTCCTAAATAGTTCTCGAATCTTGGGACTTATCATGG-TGAGACTGGGTTCTTTGAACTATATAAGAAGATGAGAAGAAAACCCATTTCCAGGAACGAAATTTCTAGTGACTGTTAACTCTTTCTCATTGTGGTTTGCCCATATATGAACCTTTGCCAATGTTGATAAAATAACATTGATCCATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1900018 731 +   2316924 gaaggaaagaaagaaggaagg------------aaga----aaggaaggaaggaagga-gaaagacagaggtagggagggaaggaaggaaaggaga--gagcgagagaaaaggagacgggaggtgaggggaggggagggAATTCATAAGGCATAAATGAAAAACAGCTTTGGGGGTGGAGAGGAGGATTGAATTATGAGAGTAAGACAAAAGATAAATAGAAATAGGATTGAATAGTACTTCAG--AAAAAC-AAACATGCTATTGCCAAAGACAAGCAGGTGTGGAAAGGGAGAGGTTTT---AACAACTCTTTTAGGAATGGGAGAAAGATTGAAAGATGGAGA--AGATGAGTTAGTTTGGCTCATGCTAAATTTAAAGTATCTGTGGGGCACACTTGTGAGGATATTACACAGAGAACTCAGGCAATTAACTCCATCTCCAGCCTGGGATTTGTAAGC-GTTAGTAGTAGTAGACACATTACATGG-AGGTGAATAAAGACTAAAAAGTGTACTTTGAGATATGGAAATTAGAAGCCTATTCGTGATATTTGTAGGCAACGAACAAGTTTGCTCCTAAATAGTTCTCGAATCTTGGGACTTATCATGG-TGAGACTGGGTTCTTTGAACTATATAAGAAAATAAGAAGAAAACCCATTTCCAGGAACGAAATTTCTAGTGACTGTTAACTCTTTCTCATTCTGGTTTGCCCATATATGAACCTTTGCCAATGTTAATAAAATAACACTGATCCATTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1774065 733 -   3067355 gaaggaaggaaggaaggaagg------------aagg----aaggaaggaaggaagga-gaaagacagaggtagagaaggaaggaaggaaaggagagggagagagagaaaaggagacaggaggtgaggggaggggagggAATTCATAAGGCATAAATGAAAAACAGCTTTGGGGGTGGAGAGGAGGGTTGAATTATGAGAGGAACACGAAAGATAAATAGAAATAGGATTGAAGAGTAGTTCAG--AAAAAC-AAACATGCTATTGCCAAAGACAAGCAGGTGCAGAAAGGGAGAGGTTTT---AACAACTCTTTTAGGAATGGGAGAAAGATTGAAAGATGGAGA--AGATGAGTTAGTCTGGCTCATGCTAAATTTAAAATATCTGTGGGGCACACTTGTGAGGATATTACACAGAGAACTCAGGCAATTAACTCCATCTCCAGCCTGGGATTTGTAAGC-GTTAGTAGTAGTAGACACATTATGTGG-AGGTGAATAAAGACTAAAAAGTGTACTTTGAGATATGGGAATTACAAACCTATTCGTGATATTTGTAGGCAACAAACAAGTTTGCTCCTAAATAGTTCTCGAATCTTGGGACTTATCATGG-TGAGACTGGGTTCTTTGAACTATATAAGAAGATGAGAAGAAAACCCATTTCCAGGAACGAAATTTCTAGTGACTGTTAACTCTTTCTCATTCTGGTTTGCCCATATATGAACCTTTGCCAATGTTAATAGAATAGCATTGATCCATTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            166497 657 -    375362 -------------------------------------------------------------------------------gaagAAAAGGGA----A--GAGAGAGAA--AAGGGGTTGAGAAGTGAGAGGAGGGGACGGAATTCATAAGGCATAAGTGAAAACCAGCTTTGGGGGTGCAGAGAACGATTGA-CTATGAGAGTAAGATGAAAGATAAATAGAAACAGGATTGAAGAATGGTTCAGAAAAAAAC-AAACATGCTATTGCCAAACACAAGCAGGTGCAGAAAAGGGAAGGTTTT---ACCGACACTTTCAGGAGTGGGAGAAAGATTGGAAGATGGAGA--AGATGAGTTAGTTAGGGTCATGTGAAATTTAGAGTATCTGTGGGGCACA-TTGCAAGGATGCTACACAGAGATCTCAGGCAATGGACTCTGTCTCCAGCCTGGGACTTGTGAGT-ATTATTAGTAGCAGACACATTGCATGG-AGGTGGATAAAGACTAAAAAGTACCCTTTTAGATTTGGGAATTACAAACGTTTTCATG---TTTGTAGGAAACAAACAAGTTTGCTCCTAAATAGTTCTTGAATCTTGGGACTT---ATGT-TAAGACTGTGTTCTTTAAACTATATGAAAAGATGAGAAGAGAACCCATTTCCTGGCACAAAATTTCTAGGGGATATTAACTCTTTCTCTTTCTAGTTTGCCCATATAAGAGCCTTTGCTAATGTTAATAAAATAACATTGATGCCTTT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      105020 663 -    285216 -------------------------------------------------------------------------------gaagaaaagggaagaga--gagagagaa--aaggggatgggaggtgagaggaggggagggaATTCATTAGGCATGAATGAAAACCAGCTTTGGGGGTGCAGAGAAGGGATGA-CTATGAGAGTAAGAGGTAAGATAAATAGAAACAGGATTGAAGAATGGTTCAG--AAAAAC-AAACATGCTATTGCCAAACACAAGGAGGTGCAGAAAACGGAAGGTTTT---ATCAACTCTTTTAGGAGTGGGAGAAAGACTGGAAGATAGAGA--AGATGAGTTAGTTGGGGTCATGTGAAATTTAGAATATCTGTGGGGCACACTTGTGAAGACGCTACACAGAGATCTCAGGCAACTGACTCTGTCTCCAGCCTGGGACTTGTGAGT-ATTAGTAATAGTGGACACATTGCATGG-AGGTGGATAAAGACTAAAAAGTGTCCTTTTAGATTTGGGAATTACAAACTTGTTCATGATATTTGTAGGAAACAAACAAGTTTGCTCCTAAATAGTTCTTGAATCTTGGGACTT---ATAT-TAAGACTGTGTTCTCTGAACTATATAAAAAGATGAGAAGAAAATCCACTTCCCAGCACAACACTTCTAGTGGCTATTAACTCTTTCTCATTCTGTTTTGCCCATATATGAGCCTTTGCTAATGTTAATAAAATAACATTGATGCCTTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480606 605 -   2232465 --------------------------------------------GAAGAGTTGAATTATGAGAGTGAGACTTAAGATAAACAGGATTTAAGGGATA--AAGACAAAA-------------AAGCGGG------------------TGAAGCATGTAT-----------------------------------TTAGGAAAGCAA--------ACAAACATA--------------------CAT--ACAAAC-AAAC-----ATTACCAAACAGAATGAGGTGTAAAAATGGGGAAGTTTTTTGATCAGCTCTTTTAGGAATAGAAGGAAGATTGGAAAATAGAAAACAAATGAGCTAGCTCAGCTCATCTTAAATTCAGTGTATCTGTGGGACAGAGTTGTGAAGATGTTACACAGCCAACTCAGGCAATTAA-------TTGATCTAGGGATTTGTGGGTAATCATTAGGCATACATGTGGAAAGTGGAAAGTGGACAAAGGCCAAAAAGTATGCTTTGAGATTTGGGGATTACAAACCTATTTGTTTTATTTGTAGGGAACAAATAAATTTGCTCCTAGGCAAATTT-GAACCCTGGCAATTATCATAATTAAGACTGGGTTCTTTGAACTACATAAGAAGATTAAAAGAAAATACATTTCTTGGCACCAGATTCCTGGTGGCTACTGACTTTTTCTCATTCTGGTTTGCTCATACGTGAACTTTTACCACCATTCATAAAATAACATTGATTCCTTT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=1004885.000000
s hg38.chr6_GL000254v2_alt     69861 156 +   4827813 TAAAATTGGCAGATTGCAAGTTGTATGGCAGAC--TTGGCTTTTCAGTTGGCTGACGGGATTTCTAGAATAAAAATAGGAA--ACTGAGTAATAGGTTTCACTGAATGAGAGA-CTAGAGAAGCGTTACACAC-AAAATTCATATGTATTCAtgtgtgtgcg--
s panTro5.chr6              29040415 156 + 175400573 TAAAATTGGCAGATTGCAAGTTGTATGGCAGAC--TTGGCTTTTCAGTTGGCTGATGGGATTTCTAGAATCAAAATAGGAA--ACTGAGTAATAGGTTTCACTGAATGAGAGA-CTAGAGAAGCGTTACACAC-AAAATTCATATGTATTCAtgtgtgtgcg--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29284548 156 + 173848474 TAAAATTGGCAGATTGCAAGTTGTATGGCAGAC--TTGGCTTTTCAGTTGGCTGATGGGATTTCTAGAATCAAAATAGGAA--ACTGAGTAATAGGTTTCACTGAATGAGAGA-CTAGAGAAGCGTTACACAC-AAAATTCATATGTATTCAtgtgtgtgcg--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5084500 159 +   6154872 TAAAATTGGCAGATTGCAAGTTGTATGGCAGAC--TTGGCTTTTCAGGTGGCTGACGGGATTTCTAGAATAAAAATGGGAAACACTGAGTAATAGGTTTCACTGAATGAGAGA-CTAGAGAAGCGTTACACACAAAAATTCATGTGTATTCAtgtgtgtgtg--
i gorGor5.CYUI01015250v1   I 816 C 0
s rheMac8.chr4              29266094 156 + 172585720 TAAAATTGGCAGATCGCAAGTTGTATGCCAGAC--TTGTCTTTTCAGTTGACTGATGGGATTTCTAGAATAAAAATAGGAAACACCAAGTAATAGATTTCACTGAATGAGAGA-CTAGAGAAGCGTTACACAC-AAAATTAATGTGTATTCAtgcgtgt--g--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28915015 156 - 170955103 TAAAATTGGCAGATCGCAAGTTGTATGCCAGAC--TTGTCTTTTCAGTTGACTGATGGGATTTCTAGAATAAAAATAGGAAACACCAAGTAATAGATTTCACTGAATGAGAGA-CTAGAGAAGCGTTACACAC-AAAATTAATGTGTATTCAtgcgtgt--g--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1892844 156 -   2996164 TAAAATTGGCAGATCGCAAGTTGTATGCCAGAC--TTGTCTTTTCAGTTGACTGATGGGATTTCTAGAATAAAAATAGGAAACACCAAGTAATAGATTTCACTGAATGAGAGA-CTAGAGAAGCATTACACAC-AAAATTAATGTGTATTCAtgcgtgt--g--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1778507 156 -   2157725 TAGAATTGGCAGATCGCAAGTTGTATGCCAGAC--TTGTCTTTTCAGTTGACTGATGGGATTTCTAGAATAAAAATAAGAAACACCGAGTAATAGATTTCACTGAATGAAAGA-CAAGAGAAGCATCACACAC-AAAATTGATGTGTATTCAtgcgtgt--g--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28232810 156 -  71996105 TAAAATTGGCAGATCGCAAGTTGTATGCCAGAC--TTGTCTTTTCAGTTGACTGATGGGATTTCTAGAATAAAAATAGGAAACACCGAGTAATAGATTTCACTGAATGAGAGA-CTAGAGAAGCGTTACACAC-AAAATTGATGTGTATTCAtgcgtgt--g--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1900749 156 +   2316924 TAGAATTGGCAGATCGCAAGTTGTATGCCAGAC--TTGTCTTTTCAGTTGACTGATGGGATTTCTAGAATAAAAATAGGAAACACCGAGTAATAGATTTCACTGAATGAAAGA-CAAGAGAAGCGTTACACAC-AAAATTGATGTGTATTCAtgcgtgt--g--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1774798 156 -   3067355 TAAAATTGGCAGATCGCAAGTTGTACGCCAGAC--TTGGCTTTTCAGTTGACTGATGGGATTTCTAGAATGAAAATAGGAAACACTGAGTAACAGATTTCACTGAATGAGAGA-CTAGAGAAGTGTTACACAC-AAAATTGgtgtgtattcatgtgtgt--g--
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            167154 152 -    375362 CAAAGTTGGCAGATTGCAAGTTGTATGGCAGAC--TTGTC----CAGTTGGCTGATGGGATTTCTAGATTAAAAGTAGGAAACACTGATTGACAGGTTTCCCTGAGGGAGGCA-CTAGAGAAGTGTTACACAC-AAAACTGACgtgtatccatgtgtgtt----
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      105683 151 -    285216 CAAAACTGGCAGATTGCAAGTTGTATGGCAGAC--TTGTC-CTTCAGCGGGTTGATGAGATTTCTAGAATAAAAATAGGAAACACTGAGTGACAGGCTTCCCTGAAGGAGGGA-CTAGAGAAGTGTTACACAC-AAAATTGACGTGTATCCAtgtg--------
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1481211 159 -   2232465 TGAAATTGGCAGAATATGAGTTGTGTGACAGACTTTTATCCTTTTAGTTAGCTCATGGGATTTTTAGAATAAAAATGGGAAAAAGAAAGT----GATTTCACTGAAGAAAAGATTTAGAGAATCATCACATAC-AAAACTGATGGGTGTGTATGTGTGTTTGCT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      138374 3965 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=1409195.000000
s hg38.chr6_GL000254v2_alt     70017 176 +   4827813 tgtctgcctgtctgtgtctgtttg------tgtgtgCATGTAAATGCTTGGGAGGATTATCTTGACTCTTTGATGCTGTAAAAGCAATATTAGGACAGTTTGCAGAAACACTCCTTCATCCTTATGTCATGTCACAGCCAGAGAAACCTGGCTGTCTATCAGATTCTTGGGAATTCATAATA
s panTro5.chr6              29040571 176 + 175400573 tgtctgcctgtctgtgtctgtttg------tgtgtgCATGTAAATGCTTGGGAGGATTATCTTGACTCTTTGATGCTGTAAAAGCAATATTAGGACAGTTTGCAGAAACACTCCTTCATCCTTATGTCATGTCACAGCCAGAGAAACCTGGCTGTCTATCAGATTCTTGGGAATTCATAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29284704 176 + 173848474 tgtctgcctgtctgtgtctgtttg------tgtgtgCATGTAAATGCTTGGGAGGATTATCTTCACTCTTTGATGCTGTAAAAGCAATATTAGGACAGTTTGCAGAAACACTCCTTCATCCTTATGTCATGTCACAGCCAGAGAAACCTGGCTGTCTATCAGATTCTTGGGAATTCATAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5084659 175 +   6154872 tgtctgccagtctgtgtctgtgag------tgtgt-catgtAAATGCTTGGGAGGATTATCTTGACTCTTTGATGCCGTAAAAGCAATATTAGGACAGTTTGCAGAAACACTCCTTCATCCTTATGTTATGTCACAGCCAGAGAAACCTGGCTGTCTATCAGATTCTTGGGAATTCATAATA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29266250 176 + 172585720 tgtctgcctgtctgtgtctttgtg------tgtgtgCATGTAAATACCGGGGAGGATTATCTTGACTCTTTGATGCCGTAAAAGCAATATTAGGACAGTTTGCAGAAACTCTCCTTCATCCTTATGTCATGTCACACCCAGAGAAACCTGGTTATCTATCAGATTCTTGGGAATTCATAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28915171 176 - 170955103 tgtctgcctgtctgtgtctttgtg------tgtgtgCATGTAAATACCGGGGAGGATTATCTTGACTCTTTGATGCCGTAAAAGCAATATTAGGACAGTTTGCAGAAACTCTCCTTCATCCTTATGTCATGTCACACCCAGAGAAACCTGGTTATCTATCAGATTCTTGGGAATTCATAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1893000 176 -   2996164 tgtctgcctgtctgtgtctttgtg------tgtgtgCATGTAAATACCGGGGAGGATTATCTTGACTCTTTGATGCCGTAAAAGCAATATTAGGACAGTTTGCAGAAACTCTCCTTCATCCTTATGTCATGTCACACCCAGAGAAACCTGGTTATCTATCAGATTCTTGGGAATTCATAATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1778663 176 -   2157725 tgtctgcctgtctgtgtctctgtg------tgtgtgCATGTAAATACCGGGGAGGATTATCTTGACTCTTTGATGCCGTAAAAGCAATATTAGGACAGTTTACAGAAACTCTCCTTCATCCTTATGTCATGTCACACCCAGAGAAACCTGGTTATCTATCAGATTCTTGGGAATTCATAATA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28232966 176 -  71996105 tgtctgcctgtctgcgtctctgtg------tgtgtgCATGTAAATACCGGGGAGGATTATCTTGACTCTTTGATGCCGTAAAAGCAATATTAGGACAGTTTGCAGAAACTCTCCTTCATCCTTATGTCATGTCACACCCAGAGAAATCTGGTTATCTATCAGATTCTTGGGGATTCATAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1900905 176 +   2316924 tgtctgcctgtctgtgtctctgtg------tgtgtgCATGTAAATACCGGGGAGGATTATCTTGACTCTTTGATGCCGTAAAAGCAATATTAGGACAGTTTACAGAAACTCTCCTTCATCCTTATGTCATGTCACACCCAGAGAAACCTGGTTATCTATCAGATTCTTGGGAATTCATAATA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1774954 176 -   3067355 tgtctgcctgtctgtgtctgtgtg------tgtgtgCATGTAAATACTGGGGAGGATTATCTTGACTCTTTGATGCCGTAAAAGTAATATTAGGACAGTTTGCAGAAACTCTCCTTCATTCTTATGTCATGTCACACCCAGAGAAACCAGGTTATCTATCAGATTCTTGGGAATTCATAATA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            167306 174 -    375362 tgtctgcttgtctgtgtctgtgtg------tgtgtgcctgtAAATGCTTGGGAGGATTATTTTGACTCTTTGATGCTGTAAAAGCAATATTAG--CAGTTTGCAGAAACATTCCTTCATCTTTATGTTGTGTCACACCCAGAGAAACCCGGCTGTCTATCAGATTCTTGGGAATTCATAATA
i saiBol1.JH378348         C 0 I 346
s cebCap1.NW_016108108v1      142339 164 -    373274 TGTCTGCCTGTC--------TCTG------TGTGTGCCTGTAAATGCTAGGGA-GATTATCTTGGCTCTTTGATGCTGTAAAAGCAACATTAGGACAGTTTGCAGAAACA---CTCCATTATTACGTCATGTTGCACCCAGAGAAACCTGGATGTCTGCTGCATTCTTGGGAATTCATCACA
i cebCap1.NW_016108108v1   I 3965 I 3
s aotNan1.NW_018494050v1      105834 173 -    285216 tgtttatttgcctgtgtc--tgtg------tgtgtgcatgtAAATGCTGGGGAGGATTATTTGGACTCTTCGATGCTGTAAAA-CAATATTAGGACAGTTTGCAGAAACAGTCCTTCATCTTCATGTCGTGTCACACTCAGAGAAACCTGGCTGTCTATCAGATTCTTGGGAATTCGTAATA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1481370 175 -   2232465 ----TGTCTATCCATGTGCATGTGCTCTCACATGCACACGTAAATGCTGGGGAGGATTATCTTGACCATCTGATGCTGTAAAAGCAGTATTAGGACAGTTTGCAGAAACACAC---CATCATTATGTTGTATTGCACTCAGAGAAACCTGGATATCTATTGGATACTTGGGAATTCATGGCA
i otoGar3.GL873742         C 0 C 0
e calJac3.chr4             171318833 9438 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=308908.000000
s hg38.chr6_GL000254v2_alt     70193 42 +   4827813 AGAAGATATGCTTTTTTGTTTGCCACATGAAAGGGGGG-AATT-
s panTro5.chr6              29040747 42 + 175400573 AGAAGATATGCTTTTTTGTTTGCCACATGAAAGGGGGG-AATT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29284880 42 + 173848474 AGAAGATATGCTTTTTTGTTTGCCACATGAAAGGGGGG-AATT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5084834 41 +   6154872 AGAAGATACGCTTTTTTGTTTGCCACATGAAA-GGGGG-AATT-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29266426 42 + 172585720 AGAAGGTATGCTTTTTTGTTTGTCACATAAAAGGGGGG-AATT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28915347 42 - 170955103 AGAAGGTATGCTTTTTTGTTTGTCACATAAAAGGGGGG-AATT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1893176 42 -   2996164 AGAAGGTATGCTTTTTTGTTTGTCACATAAAAGGGGGG-AATT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1778839 42 -   2157725 AGAAGGTATGTTTTTTTGTTTGCCACATAAAAGGGGGG-AATT-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28233142 42 -  71996105 AGAAGGTATGCTTTTTTGTTTGCCACATAAAAGGGGGG-AATT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1901081 42 +   2316924 AGAAGGTATGTTTTTTTGTTTGCCACATAAAAGGGGGG-AATT-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1775130 42 -   3067355 AGAAGGTATACTTTTTTGTTTGCCACATAAAAGGGGAG-GATT-
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            167826 42 -    375362 AAAAGGTCTGCTTTTTTGTTTGCCACACAGAAGGGGGa-aatt-
i saiBol1.JH378348         I 346 C 0
s cebCap1.NW_016108108v1      142506 43 -    373274 TGAAGGTCTGCTTTTTTGTTTGCCTCATGAAAAGGAGATAATT-
i cebCap1.NW_016108108v1   I 3 I 870
s aotNan1.NW_018494050v1      106007 42 -    285216 AGAAGGTCTGCTTTTTTGTTTGCCACACAAAAGGGGGA-AATT-
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1481545 39 -   2232465 ---AGGTTT-TTTTATTTTTTGCCTCATAAAAATGGGA-ATTTT
i otoGar3.GL873742         C 0 C 0
e calJac3.chr4             171318833 9438 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=131626.000000
s hg38.chr6_GL000254v2_alt     70235 21 +   4827813 TAAAATAATTAAATATCCATA
s panTro5.chr6              29040789 21 + 175400573 TAAAATAATTAAATATCCATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29284922 21 + 173848474 TAAAATAATTAAATATCCATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5084875 21 +   6154872 TAAAATAATTAAATATCCGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29266468 21 + 172585720 TGAAATGATTAAATCTCTATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28915389 21 - 170955103 TGAAATGATTAAATCTCTATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1893218 21 -   2996164 TGAAATGATTAAATCTCTATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1778881 21 -   2157725 TGAAATGATTAAATCTCCGTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28233184 21 -  71996105 TGAAATGATTAAATCTCCATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1901123 21 +   2316924 TGAAATGATTAAATCTCCGTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1775172 21 -   3067355 TGAAATGATTAAATCTCCATA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            167868 21 -    375362 ttaaataattaaatatCTGTA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      106049 21 -    285216 TTAAATAATTGAATATCTGTA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1481584 21 -   2232465 TAAAAAAATGAAATATCTGTA
i otoGar3.GL873742         C 0 I 26
e cebCap1.NW_016108108v1      142549 870 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=66847.000000
s hg38.chr6_GL000254v2_alt     70256 11 +   4827813 TCTATCTTCAG
s panTro5.chr6              29040810 11 + 175400573 TCTGTCTTCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29284943 11 + 173848474 TCTGTCTTCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5084896 11 +   6154872 TCTATCTTCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29266489 11 + 172585720 TCTATCTTCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28915410 11 - 170955103 TCTATCTTCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1893239 11 -   2996164 TCTATCTTCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1778902 11 -   2157725 TCTATCTTCAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28233205 11 -  71996105 TCTATCTTCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1901144 11 +   2316924 TCTATCTTCAG
i manLeu1.NW_012104165v1   C 0 I 15312
s colAng1.NW_012115566v1     1775193 11 -   3067355 TCTATCTTCAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            167889 11 -    375362 TCTACCTTGAC
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      106070 11 -    285216 TCTATCTTGAC
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1481605 26 -   2232465 I
e cebCap1.NW_016108108v1      142549 870 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=1711999.000000
s hg38.chr6_GL000254v2_alt     70267 288 +   4827813 GCTATCTACCAACAACATGATTGAAACAC------------TTTTTTTTTT------------GCGTATAATGTGTAGGATGAGCTTATTTATCACAGCATTCTTCTGAGGAATTAAACATTTAATTTTGAAGACAGAACACCCTCACGTCATACATACTCAGTTCTGAAAACCTAAAAATATATAAAGTACCtgtttaaatctgcactttccaatatggttaccattagccacattggctattgaatgcttgaaattgcccagtccaaggtaagatgtgttgtaagtataaaatatataccagatttcaaa
s panTro5.chr6              29040821 293 + 175400573 GCTATCTACCAACAACATGACTGAAACAC------------TTTTTTTTTT-------TTTTTGCGTATAATGTGTAGGATGAGCTTATTTATCACAGCATTTTTCTGAGGAATTAAACATTTAATTTTGAAGACAGAACACCCTCACGTCATACATACTCAGTTTTGAAAACCTAAAAATATATAAAGTACCtgtttaaatctgcactttccaatatggttaccatcagccacattggctattgaatgcttgaaattgcccagtccaaggtaagatgtgttgtaagtataaaatatataccagatttcaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29284954 288 + 173848474 GCTATCTACCAACAACATGATTGAAACAC------------TTTTTTTTTT------------GCGTATAATGTGTAGGATGAGCTTATTTATCACAGCATTCTTCTGAGGAATTAAACATTTAATTTTGAAGACAGAACACCCTCACGTCATACATACTCAGTTTTGAAAACCTAAAAATATATAAAGTACCtgtttaaatctgcactttccaatatggttaccattagccacattggctattgaatgcttgaaattgcccagtccaaggtaagatgtgttgtaagtataaaatatataccagatttcaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5084907 300 +   6154872 GCTATCTACCAACAACATGATTGAAACCt------------ttttttttttttttttttttttGCGTATAATCTGTAGGATGAGCTTATTTATCACAGCATTCTTCTGAGGAATTAAACATTTAATTTTGAAGACAGAACACCCTCACGTCATACATACTCAGTTTTGAAAACCTAAAAATGTATAAAGTACCtgtttaaatctgcactgtccaatatggttaccattagccacattggctattgaatgcttgaaattgcccagtccaaggtaagatgtgttgtaagtataaaatatataccagatttcaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29266500 283 + 172585720 ACTATCTACCAACAACATGATCAAAATAC-----------------TTTTT------------GCGTATAATCTGTAGGATGAGCTCGTTTAACACAGCATTCTTCTGAGGAATTAAACGTTTAATTTTGAAGACAGAACACCCTCATGTCATACATACTCAGTTTTGAAAACCTAAAAACATATAAAGTATCtgtttaaatctgcactgtccaatatggttaccattagccacattggctattgaatgcatgaaattgcccagtccgaggtaagacgtgtcgtaagtataaaatatataccggatttcaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28915421 283 - 170955103 ACTATCTACCAACAACATGATCAAAATAC-----------------TTTTT------------GCGTATAATCTGTAGGATGAGCTCGTTTAACACAGCATTCTTCTGAGGAATTAAACATTTAATTTTGAAGACAGAACACCCTCATGTCATACATACTCAGTTTTGAAAACCTAAAAACATATAAAGTATCtgtttaaatctgcactgtccaatatggttaccattagccacattggctattgaatgcatgaaattgcccagtccgaggtaagacgtgtcgtaagtataaaatatataccggatttcaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1893250 283 -   2996164 ACTATCTACCAACAACATGATCAAAATAC-----------------TTTTT------------GCGTATAATCTGTAGGATGAGCTCGTTTAACACAGCATTCTTCTGAGGAATTAAACGTTTAATTTTGAAGACAGAACACCCTCATGTCATACATACTCAGTTTTGAAAACCTAAAAACATATAAAGTATCtgtttaaatctgcactgtccaatatggttaccattagccacattggctattgaatgcatgaaattgcccagtccgaggtaagacgtgtcgtaagtataaaatatataccggatttcaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1778913 300 -   2157725 ACTATCTGCCAACAACATGATCAAAACACtttttttttttttttttttttt------------GCGTATAATCTGTAGGATGAGCTCGTTTAACACAGCATTCTTCTGAGGAATTAAACGTTTAATTTTGAAGACAGAACACCCTCATGTCATACATACTCAGTTTTGAAAACCTAAAAATATATAAAGTACCtgtttaaatctgcactgtccgatatggttaccattagccacattggctactgaatgcatgaaattgcccagtccgaggtaagatgtgtcgtaagtataaaatatataccgaatttcaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28233216 287 -  71996105 ACTATCTACCAACATGA---TCAAAATAC-----ttttttttttttttttt------------GCATATAATCTGTAGGATGAGCTTGTTTAACACAGCATTCCTCTGAGGAATTAAACATTCAATTTTGAAGGCAGAACACCCTCATGTCATACATACTC-----CTAAAACCTAAAAACATATAAAGTATCtgtttaaatctgcaccgtccaatatggttaccattagccacattggctactgaatgcatgaaattgcccagtccgaggtaagatgtgtcgtaagtataaaatatataccggatttcaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1916467 272 +   2316924 GCTATCTACCAACAACA--------------------------TGTTTTTT------------GCATATAATCTGTAGGATGAGCTCATTTAATACAGCATTCTTCTGAGAAATTAAACATTTAATTTTGAAGACAT-ACATACTC-TGTCATACATACTCAATTTTGAAAACCTAAAAATATGTAAAGTATATGTTTAAATctgcacagtccaatatggttatcgttagccacaatgggtattgagtactgaaaattgcccagtccaagttaagatgtgttgaaagtgagaaatatgtaccagatttcaaa
i manLeu1.NW_012104165v1   I 15312 T 14452
s colAng1.NW_012115566v1     1775204 295 -   3067355 ACTATCTACCAACAACATGATGGAAACAC-----ttttttttttttttttt------------GCGTATAATCTGTAGGATGAGCTCTTTTAACACAGCATTCTTCTGAGAAATTAAACATTTAATTTTGAAGACAGAACACCCTCATGTCATACATACTCAGTTTTGAAAACCTAAAAATATATAAAGTATCTGTGTAAATctgcactgtccaatatggttaccattagccacattggctattgaatgcatgaaattgcccagcccgaggtaagatgtgttgtaagtataaaatatataccggatttcaaa
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            167900 284 -    375362 ACTGTCTACCAACAACATGATTGAAACAC---------------AATTTTT------------CTGTTTAATCTGTAGGATGAGCTCATTTAACACAGCATTCTTCTGAGGAATTAAAGATTTAATTTTGAAGACGGGGCACCCTCATGTCATACTTACTCAATTTCAAAAACCCAAAAATATATAAAGTATCtgtttaaacctgcactgtccaatatggttaccattag-cacattggctattgaatgcttgaaatttcccagtccaagttaagatgtgttgtaagtgtgaaatatatagcagatttcaat
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      106081 284 -    285216 ACTATCTACCAACAACATGATTGAAACAC---------------ATTTTTT------------CTGTATAATTTGTAGGATGAGCTCATTTAACACAGCATTCTTCTGAGGAATTAAAGATTTAATTTTGAAGACAGAGCACCCTCATGTCATACATACTCAATTTCAAAAGCCTAAAAATATATAACGTATCtgtttaaacctgcactgtccagtatggttaccattag-cacattggctattgaatgcttgaaatttcccagtccaagttaagatgtgttgtaagtgtgaaatatatacgagatttcaat
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1481605  26 -   2232465 I
e cebCap1.NW_016108108v1      142549 870 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=1574778.000000
s hg38.chr6_GL000254v2_alt     70555 311 +   4827813 gatgcaatatcattttt-aatataaaataactcacttataattttaagatggattacttaaaataatg---ttgttatacaaggc---------------------catttacgtatattattaaaactggacataaaagacggaaacagtaaacatcggggactact--agggagtagctgggaaggggaaaggcttgaaaagctaactattggatactatgctcactacccgggtgacaggattaatcccaccccaaccccagcatcatgcaatatacccatgtaagaatcctgcacatgtaccccctgaatctaacataaaagttgaaattattt
s panTro5.chr6              29041114 311 + 175400573 gatgcaatatcattttt-aatataaaataactcacttataattttaagatggattacttaaaataatg---ttgttatacaaggc---------------------catttacgtatattattaaaactggacataaaagacggaaacagtaaacatcggggactact--agggagtagctgggaaggggaaaggcttgaaaagctaactattggatactatgctcactacccgggtgacaggattaatcccaccccaaccccagcatcatgcaatatacccatgtaagaatcctgcaaatgtaccccctgaatctaacataaaagttgaaattgttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29285242 311 + 173848474 gatgcaatatcattttt-aatataaaataactcacttataattttaagatggattacttaaaataatg---ttgttatacaaggc---------------------catttacgtatattattaaaactggacataaaagacggaaacagtaaacatcggggactact--agggagtagctgggaaggggaaaggcttgaaaagctaactattggatactatgctcactacccgggtgacaggattaatcccaccccaaccccagcatcatgcaatatacccatgtaagaatcctgcacatgtaccccctgaatctaacataaaagttgaaattattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5085207 310 +   6154872 gatgcaatatcattttt-aatataaaataactcacttataattttaagatggattacttaaaataatg---ttgttatacaaggc---------------------gatttacatatattattaaaactggacataaaagacggaaacagtaaacatc-gggactact--agggagtagctgggaaggggaaaggcttgaaaagctaactattggatactatgctcactacccgggtgataggattaatcccaccccaaccccagcatcatgcaatatacccatgtaacaatcctgcacacgtaccccctgaatctaacataaaagttgaaattattt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29266783 314 + 172585720 gatgcaatatcattttt-aatataaaataactcacttataattttaagatggattacttaaaataatgtttttgttatacaaggc---------------------gatttacatatattattaaaactggacataaaagacggaaagagtaaacaccggggactact--agggagtagccgggaaggggaacggcttgaaaagctagctattgggtactatgctcactactcgggtgatgggattaatcccaccccaaccccagcatcatgcaatatacccatgtaacgatcttgcacatgtaccccctgaatctaaaataaaagttgaaattattt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28915704 314 - 170955103 gatgcaatatcattttt-aatataaaataactcacttataattttaagatggattacttaaaataatgtttttgttatacaaggc---------------------gatttacatatattattaaaactggacataaaagacggaaagagtaaacaccggggactact--agggagtagccgggaaggggaacggcttgaaaagctagctattgggtactatgctcactactcgggtgatgggattaatcccaccccaaccccagcatcatgcaatatacccatgtaacgatcttgcacatgtaccccctgaatctaaaataaaagttgaaattattt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1893533 314 -   2996164 gatgcaatatcattttt-aatataaaataactcacttataattttaagatggattacttaaaataatgtttttgttatacaaggc---------------------gatttacatatattattaaaactggacataaaagacggaaagagtaaacaccggggactact--agggagtagccgggaaggggaacggtttgaaaagctagctattgggtactatgctcactactcgggtgatgggattaatcccaccccaaccccagcatcatgcaatatacccatgtaacgatcttgcacatgtaccccctgaatctaaaataaaagttgaaaTTATTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1779213 314 -   2157725 gatgcaatatcattttt-aatataaaataactgacttacaattttaagatggattacttaaaataatgtttttgttatacaaggc---------------------gatttacatatattattaaaactggacataaaagacggaaagagtaaacaccggggactact--agggagtagccgggagggggaaaggcttgaaaagctagctattggatactatgctcgctactcgggcgatgggattaatcccaccccaaccccagcatcataaaatatacccatgtaacgatcttgcagatgtaccccctgaacctaaaatgaaagttgaaattattt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28233503 283 -  71996105 gatgcaatatcattttt-aatataaaataactcacttataattttaagatggattacttaaaataatgtttttgttatacaaggc---------------------gatttacatatattattaaaactGGACATAAAAGACGGAAAGAGTAGCC--------------------------------gggaaaggcttgaaaagctagctgttggatactatgctcactacccgggtgatgggattaatcccaccccaaccccagcatcatgcaatatacccatgtaacgatcttgcacatgtaccccctgaatctaaaataaaagttgaaatt-tta
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1775499 314 -   3067355 gatgcaatatcattttt-aatataaaataactcacttataattttaagatggattacttaaaataatgtttttgttatacaaggc---------------------gatttacatatattattaaaactggacataaaagacggaaagagtaaacaccggggactact--agggagtagccgggaaggggaaaggcttgaaaagctagctattggatactatgctcactacccgggtgatgggattaatcccaccccaaacccagcatcatgcaatatacccatgtaacaatcttgcacatgtaccccatgaatctaaaataaaagttgaaattattt
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            168184 336 -    375362 gatgtaatattatttttgaatataaaataactcagtaataattttaagatggattacttaaaataatgttttggacatacaaatttacatgtattttggacatacaaatttacttatattgtcaaaactggatgtaaaagatggaaacagtaaacaccagacactcctagagggagaggcaggagcagggaaaggattgaaaagatgactgttggatgctatgctcactacctgggtgatgggattaatcccaccccagccccagcatcatgcagcaaacccatgtgacaaacctgcacacataccct-ggaatctaaaatacaagttgaaattatt-
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      106365 313 -    285216 gatgtaatatcattttttaatataaaataactcagtaataattttaagatggattacttaaaataatgttttggacatacaaggt---------------------ggtttacttatattgtcaaaactggacgtaaaagatggaaac--taaacaccagggactcctagagggagaggcaggaggagggaaagg-ctgaaaagatgactgttggatgctacactcactacctgggtgatggaattaatcccactccagccccagcatcatgcagcatacccatgtaacaaacctgcacacatacccc-ggaatctaaaatacaagttgaaattattt
i aotNan1.NW_018494050v1   C 0 I 1048
e otoGar3.GL873742           1481605  26 -   2232465 I
e cebCap1.NW_016108108v1      142549 870 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I
e manLeu1.NW_012104165v1     1916739 14452 +   2316924 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=54427.000000
s hg38.chr6_GL000254v2_alt     70866 15 +   4827813 ttaaaataatataga
s panTro5.chr6              29041425 15 + 175400573 ttaaaataatataga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29285553 15 + 173848474 ttaaaataatataga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5085517 13 +   6154872 tt--aataatataga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29267097 15 + 172585720 taaaaatgatataga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28916018 15 - 170955103 taaaaatgatataga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1893847 15 -   2996164 TAAAAATGATATAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1779527 15 -   2157725 taaaaatgatataga
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28233786 15 -  71996105 aaaaaaTTATATAGA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1775813 15 -   3067355 taaaaatgatataga
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            168520 15 -    375362 aaaaaatgatataga
i saiBol1.JH378348         C 0 T 28695
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      142549 870 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I
e manLeu1.NW_012104165v1     1916739 14452 +   2316924 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=553765.000000
s hg38.chr6_GL000254v2_alt     70881 145 +   4827813 gaccgggctcggtggctcacgcctgtaataccagcactttgggagaccgaggtgggcggatcacctgagatcgggagttcaagaccagcctgaccaacatggagaaacctcgtatctactaaaagtacaaaattggggccgggcg
s panTro5.chr6              29041440 145 + 175400573 gatcgggctcggtggctcacgcctgtaataccagcactttgggagaccgaggtaggcggatcacctgagatcgggagttcaagaccagcctgaccaacatggagaaacctcgtatctactaaaaatacaaaattggggccgggcg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29285568 145 + 173848474 gaccgggctcggtggctcacgcctgtaataccagcactttgggagaccgaggtgggcggatcacctgagatcgggagttcaagaccagcctgaccaacatggagaaacctcgtatctactaaaaatacaaaattggggccgggcg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5085530 145 +   6154872 ggccgggcgctgtggctcacgcctgtaataccagcactttgggagaccgaagtgggcggatcacctgagatcgggagttcaagaccagcctgaccaacatggagaaacctcgtatctactaaaaatacagaattggggccgggag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29267112 145 + 172585720 ggccgggcaaagtggctcacgcctgtaatcccaacactttaggagacagaggcgggcggatcatctgagatcgggagttcaagaccagcctgaccaacatggagaaacctcgtctctactaaaaatacaaaattaaggccgggcg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28916033 145 - 170955103 ggccgggcacagtggctcacgcctgtaatcccagcactttaggagacagaggcgggcggatcatctgagatcgggagttcaagaccagcctgaccaacatggagaaacctcgtctctactaaaaatacaaaattaaggccgggcg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1893862 145 -   2996164 ggccgggcacagtggctcacgcctgtaatcccagcactttaggagacagaggcgggcggatcatctgagatcgggagttcaagaccagcctgaccaacatggagaaacctcgtctctactaaaaatacaaaattaaggccgggcg
i macNem1.NW_012011356v1   C 0 I 15390
s cerAty1.NW_012001495v1     1779542 145 -   2157725 ggccgggcacagtggctcatgcctgtaatcccagcactttaggagacagaggcgggcggatcatctgagatcgggagatcgagaccagcctgagcaacacggagaaacctcgtctttactaaaaatacaaaattaaggccgggcg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28233801 145 -  71996105 ggccaggcacagtggctcacgcctgtaatcccagcaccttaggagaccgaggcgggcggatcatctgagatcggaagttcaagaccagcctgaccaacatggagaaacctcgtctctactaaaactacaaaattaaggccgggcg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1775828 145 -   3067355 ggccgggcacagtggctcatgcctgtaatcccagcactttaagagaccgaggcgggcggatcatctgagatcaggagttcaagaccagcctaaccaacatggagaaacctcgtctctactaaaaatacaaaattaaggccaggcg
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            168535 28695 -    375362 T
e otoGar3.GL873742           1481605  26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      142549 870 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I
e manLeu1.NW_012104165v1     1916739 14452 +   2316924 T
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=376642.000000
s hg38.chr6_GL000254v2_alt     71026 143 +   4827813 cggggtctcacgcatgtaat-cccagcactttgggaggccga--ggcgggc--gtatcacg-gggt-caggagatcgagaccatcctggttaacacggtgaaacccc-aattct-actaaaaaat-acaaaaaattagccaggcgtggtggca
s panTro5.chr6              29041585 143 + 175400573 cggggtctcacgcctgtaat-cccagcactttgggaggccga--ggcgggc--gtatcacg-gggt-caggagatcgagaccatcctggttaacacggtgaaacccc-aattct-actaaaaaat-acaaaaaattagccgggcgtggtggca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29285713 145 + 173848474 cggggtctcacgcctgtaat-cccagcactttgggaggccga--ggcgggc--gtatcacg-gggt-caggagatcgagaccatcctggttaacacggtgaaacccc-aattctaactaaaaaataacaaaaaattagccgggcgtggtggca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5085675 142 +   6154872 cggggtctcacgcctgtaat-cccagcacttt-ggaggccga--ggcgggc--gtatcacg-aggt-caggagatcgagaccatcctggttaacacggtgaaacccc-gattct-actaaaaaat-acaaaaagttagccgggcgtggtggca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29267257 143 + 172585720 aggtggctcaggcctgtaat-ctcagcactttgggaggccga--ggcgggc--ggatcacg-aggt-gaggagatggagaccattctggctaacacggtgaaacccc-ttctct-actaaaaaat-acgaaaaagtagccgggcgtggtggca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28916178 143 - 170955103 aggtggctcaggcctgtaat-ctcagcactttgggaggccga--ggcgggc--ggatcacg-aggt-gaggagatggagaccattctggctaacacggtgaaacccc-ttctct-actaaaaaat-acgaaaaagtagccgggcgtggtggca
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1779687 151 -   2157725 agttggctcaggcctgtaatactcagcactttggagggccggatggcgggccggaatcgcgtaggtccagggaatcgagactattctggctaacacggtgaaaccccggtctct-actaaaaaat-acgaaaaagataccgggcgtggtgaca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28233946 143 -  71996105 aggtggctcaggcctgtaat-ctcagcactttgggaggccga--ggcgggc--ggatcacg-aggt-caggagatcgagaccattctggttaacgcagtgaaacccc-gtctct-actaaaaaat-acaaaaaagtagccaggcgtggtggca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1775973 143 -   3067355 aggtggctcaggcctgtaat-ctcagcactttgggaggctga--ggagggc--ggatcacg-aggt-caggagatcgaaaccattctggctaacacgatgaaaccct-gtctct-actaaaaaat-acaaaaaagtggccgggcttggtggca
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            168535 28695 -    375362 T
e otoGar3.GL873742           1481605  26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      142549 870 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I
e manLeu1.NW_012104165v1     1916739 14452 +   2316924 T
e macNem1.NW_012011356v1     1894007 15390 -   2996164 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=907089.000000
s hg38.chr6_GL000254v2_alt     71169 282 +   4827813 ggcgcctgtagtcccagctactcgggaggctgagg---caggagaatggcgtgaacccggg--aggcggagcttgcagcgcgcgccactgcactccagcctgggcgacagagcgagactccgtcacacaca------------ca--aa-----aaaaaaattag--------------------ctggggtggtgg--cgcgtgcctgtaatcccagctactcgggaagctg-aggcggcaggagaat-cgcttgaaccctggaggcagaggttgcggtgagccgagatcgcgccattgca-ctccagcctgggcaacaagagcgaaact
s panTro5.chr6              29041728 282 + 175400573 ggcgcctgtagtcccagctactcgggaggctgagg---caggagaatggcgtgaacccggg--aggcggagcttgcagcgcgcgccactgcactccagcctgggcgacagagcgagactccgtcacaaaaa------------aa--aa-----aaaaaaattag--------------------ccggggtggtgg--cgagtgcctgtaatcccagctactcgggaagctg-aggcggcaggagaat-cgcttgaacactggaggcagaggttgcgctgagccgagatcgcgccattgca-ctccagcctgggcaacaagagcgaaact
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29285858 236 + 173848474 ggcgcctgtagtcccagctactcgggaggctgagg---caggagaatggcgtgaacccggggagggcggagcttgc---------------------------------------------------------------------------------------agnnnnnnnnnnnnnnnnnnnnccggggtggtgg--cgagtgcctgtaatcccagctactcgggaagctg-aggcggcaggagaat-cgcttgaacactggaggcagaggttgcggtgagccgagatcgcgccattgca-ctccagcctgggcaacaagagcgaaact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5085817 292 +   6154872 ggcacctgtagtcccagctactcgggaggctgagg---caggagaatggcgtgaacacggg--aggcggagcttgcagcgcgcgccactgcactccagcctgggcgacagagcgagactccgtcacaaaaaagtaataataataa--ta-----ataataattag--------------------ccggggtgatgg--cgcgtgcctgtaatcccagctactcgggaag-tg-aggcggcaggagaat-cgcttgaaccctggaggcagaggttgcggtaag-cgagatcgcgccattgca-cttcagcctgggcaacaagagcgaaact
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29267400 296 + 172585720 ggcgcctgtagtcccagctactcgagaggctgagg---caggagaatggcgtgaacccggg--aggcggagcttgcagagcgcgccactgcactccagcctgggcgacagagcgagactctgtctcaaaaaacaaaacaaaacaa--aacaaacaaaaaaattgg--------------------ccggggtggtag--cgtatgcctgtaatcccagctactcagaaagctg-a---ggcaggagaat-cgcttgaacccaggaggcggagggtgcggtgagccaagatcacaccactgcc-ctccagcctgggcaacaagagcgaaact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28916321 296 - 170955103 ggcgcctgtagtcccagctactcgagaggctgagg---caggagaatggcgtgaacccggg--aggcggagcttgcagagcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaacaaaacaaaacaa--aacaaacaaaaaaattgg--------------------ccggggtggtag--cgtatgcctgtaatcccagctactcagaaagctg-a---ggcaggagaat-cgcttgaacccaggaggcggagggtgcggtgagccaagatcacaccactgcc-ctccagcctgggcaacaagagcgaaact
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1779838 299 -   2157725 ggcg-ctgtagtccc-gctactagagaggctg-gg---caggagaatggcgtgaacccggg--aggctgagcttgcagagcgcgccactgcactccagcctgggcgacagagcgagactccgtcctcaagaacacaacaaaacagataacaaac-aacaaattgg--------------------ccgcggtggtcagccgtatgcctgtaatcccagctactcggaaagctgaa---ggcaggagaatccgcttgaacccaggaggcggaggttgcggtgagggaagatcgcaccactgcctctccagcctggggcaacagagcgaaact
i cerAty1.NW_012001495v1   C 0 I 7
s chlSab2.chr17             28234089 296 -  71996105 ggcgcctgtagtcccagctactcaagaggctgaggcaacaggagaatggcgtgaacccggg--aggcggagcttgcagagcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaacaaaacaaaac-a--aacaa--aaaaaaattga--------------------ccggggtggtag--cgtatgcctgtaatcccagctactcggaaagctg-a---ggcaggagaat-cgcttgaacccaggtggcggaggttgcggtgagccgagatcgcaccactgca-ctccagcctgggcaacaagagcgaaact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1902287 296 +   2316924 GGcgcctgtagtcccagctactagagaggctgagg---caggagaatggcgtgaacccggg--aggctgagcttgcagagcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaagaaacaaaacaaaacaa--aacaaacaaaaaaattgg--------------------ccggagtggtag--cgtatgcctgtaatcccagctactcggaaagctg-a---ggcaggagaat-cgcttgaacccaggaggcggaggttgcggtgagggaagatcgcaccactgca-ctccagcctgggcaacaagagcgaaact
i manLeu1.NW_012104165v1   T 14452 C 0
s colAng1.NW_012115566v1     1776116 296 -   3067355 ggcgcctgtagtcccagctactcgagaggctgagg---caggagaatggcgtgaacccggg--aggcagagcttgcagagcgcgccactgcaccccagcctggatgacagagcgagactccgtctcaaaaaacaaaacaaaacaa--agcaaacaaaaaaattgg--------------------ccggggtggtag--catatgcctgtaatcccagctactcggaaagctg-a---ggcaggagaat-cccttgaacccaggaggcggacgttgcgatgagccgagatcgcaccactgca-ctccagcctgggcaacaagagcgaaact
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            168535 28695 -    375362 T
e otoGar3.GL873742           1481605  26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      142549 870 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I
e macNem1.NW_012011356v1     1894007 15390 -   2996164 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=4106.000000
s hg38.chr6_GL000254v2_alt     71451 14 +   4827813 ccatctacaaaaaa
s panTro5.chr6              29042010 14 + 175400573 ccatctacaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29286094 13 + 173848474 ccatctac-aaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5086109 13 +   6154872 ccatct-caaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29267696 13 + 172585720 gcgtct-caaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28916617 13 - 170955103 gcgtct-caaaaaa
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28234385  7 -  71996105 gcgtct-c------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1902583  7 +   2316924 gcgtct-c------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1776412  6 -   3067355 gcgtct--------
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            168535 28695 -    375362 T
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      142549 870 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I
e cerAty1.NW_012001495v1     1780137  7 -   2157725 I
e macNem1.NW_012011356v1     1894007 15390 -   2996164 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=5112.000000
s hg38.chr6_GL000254v2_alt     71465 14 +   4827813 ----aaaaaaaaaaaaaa
s panTro5.chr6              29042024 14 + 175400573 ----aaaataaaaaataa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29286107 14 + 173848474 ----aaaataaaaaataa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5086122  6 +   6154872 ----aaaa--------aa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29267709 10 + 172585720 ----aaaaaaaaaa----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28916630 10 - 170955103 ----aaaaaaaaaa----
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1780144 14 -   2157725 cacaaaaaaaaaac----
i cerAty1.NW_012001495v1   I 7 C 0
s chlSab2.chr17             28234392 11 -  71996105 ---aaaaaaaaaaa----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1902590 13 +   2316924 -aaaaaaaaaaaaa----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1776418 13 -   3067355 -caaaaaaaaaaaa----
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            168535 28695 -    375362 T
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      142549 870 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I
e macNem1.NW_012011356v1     1894007 15390 -   2996164 I
e nomLeu3.chr1a             74097954 8382 + 122973662 I

a score=34313.000000
s hg38.chr6_GL000254v2_alt     71479 9 +   4827813 aaaaaaaag
s panTro5.chr6              29042038 9 + 175400573 aaaaataag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29286121 9 + 173848474 aaaaataag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5086128 9 +   6154872 aaaaaaaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106336 9 + 122973662 AAAAAAATG
i nomLeu3.chr1a            I 8382 C 0
s rheMac8.chr4              29267719 9 + 172585720 gaaaaaaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28916640 9 - 170955103 gaaaaaaag
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1780158 9 -   2157725 caaaaagag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28234403 9 -  71996105 aaaaaaaaG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1902603 9 +   2316924 aaaaaaaaG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1776431 9 -   3067355 aaaaaaaag
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            168535 28695 -    375362 T
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      142549 870 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I
e macNem1.NW_012011356v1     1894007 15390 -   2996164 I

a score=37576.000000
s hg38.chr6_GL000254v2_alt     71488 7 +   4827813 atataga
s panTro5.chr6              29042047 7 + 175400573 atataga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29286130 7 + 173848474 atataga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5086137 7 +   6154872 atataga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106345 7 + 122973662 ATATAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29267728 7 + 172585720 atataga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28916649 7 - 170955103 atataga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1909397 7 -   2996164 atataaa
i macNem1.NW_012011356v1   I 15390 C 0
s cerAty1.NW_012001495v1     1780167 7 -   2157725 atacaga
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28234412 7 -  71996105 ATATAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1902612 7 +   2316924 ATACAGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1776440 7 -   3067355 atataga
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            168535 28695 -    375362 T
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      142549 870 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=436745.000000
s hg38.chr6_GL000254v2_alt     71495 85 +   4827813 a----taaatattgcctgt---tttttttaatgtgactactagaaaatttagaactacaaaagtgactcgcattTATGACTTGTG-TT---TTTTT
s panTro5.chr6              29042054 85 + 175400573 a----taaatattgcctgt---tttttttaatgtgactactagaaaatttagaactacaaaagtgactcgcattTATGACTTGTA-TT---TTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29286137 84 + 173848474 a----taaatattgcctg----ttttttaaatgtgactactagaaaatttagaactacaaaagtgactcgcattTATGACTTGTA-TT---TTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5086144 86 +   6154872 a----taaatattgcctgt---tttttttaatatgactactagaaaatttaaaactacaaaagtgactcgcattTATGACTTGTATTT---TTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106352 88 + 122973662 A----TAAACATTGtctgtttattttttaaatgtgactactagaaaatttaaaactacggaagtggctcttgtttaagatttgta-tt---ATCTT
i nomLeu3.chr1a            C 0 I 7
s rheMac8.chr4              29267735 84 + 172585720 a----taaatattgcctg----ttttttcaatgtgactactagaaaatgtaaaactacaaaagtggctcgcattTATGACTTGTA-TT---TTTTT
i rheMac8.chr4             C 0 I 2
s macFas5.chr4              28916656 84 - 170955103 a----taaatattgcctg----ttttttcaatgtgactactagaaaatgtaaaactacaaaagtggctcgcattTATGACTTGTA-TT---TTTTT
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1     1909404 91 -   2996164 a----taagtattgcctgtttattttttaaatgtgactactagaaaatttaaaactacagaagtggttctcatttaagatttgta-ttATGTTTTT
i macNem1.NW_012011356v1   C 0 T 14953
s cerAty1.NW_012001495v1     1780174 88 -   2157725 acactcaaatattgcctg----ttttttcaatgtgactactagaaaatgtaaaactacaaaagtggctcgcattTATGACTTGTA-TT---TTTTT
i cerAty1.NW_012001495v1   C 0 I 3
s chlSab2.chr17             28234419 84 -  71996105 A----TAAATATTGCCTG----tttttttaatgtgactactagaaaatataaaactacaaaagtgattcgcattTATGATTTGTA-AT---TTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1902619 84 +   2316924 A----TAAATATTGCCTG----ttttttcaatgtgactactagaaaatgtaaaactacaaaagtggctcgcattTATGACTTGTA-TT---TTTTT
i manLeu1.NW_012104165v1   C 0 I 3
s colAng1.NW_012115566v1     1776447 86 -   3067355 a----taaatattgcctgtt--tttttttaatgtgactactagaaaatgtaaaactacaaaagtggctcacattTATGACTTGCA-TT---TTTTT
i colAng1.NW_012115566v1   C 0 I 2
s saiBol1.JH378348            139840 74 -    375362 A----CAGATATTGACTG----TTTTTT-AATGTGTTTGCTGCCAAAGGTAACACTACAAAA-TGGCTGTCATTTGTAACTTGT------------
i saiBol1.JH378348         T 28695 C 0
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      142549 870 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=1125813.000000
s hg38.chr6_GL000254v2_alt     71580 185 +   4827813 AATTATTTTTATTCCGGAAGATAAAGTAGAAGACTTGTATTATCTTTTAATTGGACAGCATTGTCTAGAGATGATGTTATCTCTTTAAATGCTGTTCTGGGAGATTCCCAGAGCCAGAGAACATGGAGCATGGTCTCCCAGTAATTAAGT----TTCATGCCTTGAGTGTTCTCGACAGAATGCATTTC
s panTro5.chr6              29042139 185 + 175400573 AATTATTTTTATTCCGGAAGATAAAGTAGAAGACTTGTATTATCTTTTAATTGGACAGCATTGTCTAGAGATGATGTTATCTCTTTAAATGCTGTTCTGGGAGATTCCCAGAGCCAGAGAACATGGAGCATGGTCTCCCAGTAATTAAGT----TTCATGCCTTGAGTGTTCTCGACAGAATGCATTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29286221 185 + 173848474 AATTATTTTTATTCCGGAAGATAAAGTAGAAGACTTGTATTATCTTTTAATTGGACAGCATTGTCTAGAGATGATGTTATCTCTTTAAATGCTGTTCTGGGAGATTCCCAGAGCCAGAGAACATGGAGCATGGTCTCCCAGTAATTAAGT----TTCATGCCTTGAGTGTTCTTGACAGAATGCATTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5086230 185 +   6154872 AATTATTTTTATTCCAGAAGATAAAGTAGAAGACTTGTATTATCTTTTAATTGGACAGCATTGTCTAGAGATGATGTTATCTCTTTAAATGCTGTTCTGGGAGATTCCCAGAGCCAGAGAACATGGAGCATGGTCTCCCAGTAATTAAGT----TTCATGCCTTGAGTGTTCTCGACAGAATGCAtttc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106447 185 + 122973662 AATTCTTTTTATCCCAGAAGGTAAAGTAGAAGACTTGTGTTATCTTTTGATTGGACAGCATTGTCTAGAGACGATGTTATCTATTTAGATGCTGTTCTGGGAGAATCCCAGAGCCAAAGGACATGGAGCATGGTCTGCTAGTAATTAGGT----TTCATGCCACGAGTGGACTTGACTAAATGCATTTC
i nomLeu3.chr1a            I 7 C 0
s rheMac8.chr4              29267821 184 + 172585720 AATTATTTTTATCCCAGAAGATAAAGTAGAAGACTTGTATTATCTTTTG-TTGGACAGCATTGTCTAGAGATGATGCTATCTCTTTAAATGCGGTTCTGGGAGATTCCCAGAGCCAGAGAGCATGGAGCATGGTCTCCGGGTAATTAAGT----TTCATGCTTCGAGTGTTCTCGACAGAATGCATTTC
i rheMac8.chr4             I 2 C 0
s macFas5.chr4              28916742 184 - 170955103 AATTATTTTTATCCCAGAAGATAAAGTAGAAGACTTGTATTATCTTTTG-TTGGACAGCATTGTCTAGAGATGATGCTATCTCTTTAAATGCGGTTCTGGGAGATTCCCAGAGCCAGAGAGCATGGAGCATGGTCTCCGGGTAATTAAGT----TTCATGCTTCGAGTGTTCTCGACAGAATGCATTTC
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1     1894542 184 -   2996164 AATTATTTTTATCCCAGAAGATAAAGTAGAAGACTTGTATTATCTTTTG-TTGGACAGCATTGTCTAGAGATGATGCTATCTCTTTAAATGCGGTTCTGGGAGATTCCCAGAGCCAGAGAGCATGGAGCATGGTCTCCGGGTAATTAAGT----TTCAAGCTTCGAGTGTTCTCGACAGAATGCATTTC
i macNem1.NW_012011356v1   T 14953 C 0
s cerAty1.NW_012001495v1     1780265 184 -   2157725 AATTATTTTTATCCCAGAAGATAAAGTAGAAGACTTGTATTATCTTTTG-TTGGACAGCATTGTCTAGAGATGATGTTATCTCTTTAAATGTGGTTCTGGGAGATTCCCAGAGCCAGAAAGCATGGAGCATGGTCTCTGAGTAATTAAGT----TTCATGCTTCGAGTGTTCTCGACAGAATGCATTTC
i cerAty1.NW_012001495v1   I 3 C 0
s chlSab2.chr17             28234503 188 -  71996105 AATTATTTTTATCCCAAAAGATAAAGTAGAAGACTTGTATTATCTTTTG-TTGGACAGTATTGTCTAGAGATGATGTTATCTCTTTAAATGTGATTCTGGGAGATTCCCAGAGCCAGAGAGCATGGAGCATGGTCTCCGAGTAATTAAGTTTCATTCATGCTTTGAGTGTTCTCGACAGAATGCATTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1902706 184 +   2316924 AATTATTTTTATCCCAGAAGATAAAGTAGAAGACTTGTATTATCTTTTG-TTGGACAGCATTGTCTAGAGATGATGTTATCTCTTTAAATGTGGTTCTGGGAGATTCCCAGAGCCAGAGAGCATGGAGCATGGTCTCTGAGTAATTAAGT----TTCATGCTTCGAGTGTTCTCGACAGAATGCATTTC
i manLeu1.NW_012104165v1   I 3 C 0
s colAng1.NW_012115566v1     1776535 184 -   3067355 AATTATTTTTATCCCAGAAGATAAAGTAGAAGACTTGTATTATCTTTTG-TTGGACAGCATTGTCTAGAGATGATGTTATCTCTTTAAATCCGGTTCTGGGAGATTCCCAGAGCCAGAGAGCATGGAGCATGGTCTCCGAGTAATTAAGT----TTCATGCTTCGAGTGTTCGCGACAGAATGCATTTC
i colAng1.NW_012115566v1   I 2 C 0
s saiBol1.JH378348            139914 147 -    375362 --------------------------------------ATTCTCTTTTGATGGGACAGCTTTGTCTACAGAGGATGTTACCTATTCAGGTGCTGTTCTGGGAGAATCCCAGAGCCAGAGGACATGGAGCACGGTCTGCCAGTGATTAAGT----TTCATGCCAGGAATGGACTTGACAGAATGCGTTTC
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1481605  26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      142549 870 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=6006.000000
s hg38.chr6_GL000254v2_alt     71765 1 +   4827813 T
s panTro5.chr6              29042324 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29286406 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5086415 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106632 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29268005 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28916926 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1894726 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1780449 1 -   2157725 T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28234691 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1902890 1 +   2316924 T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1776719 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            140061 0 -    375362 C
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      142549 870 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=994132.000000
s hg38.chr6_GL000254v2_alt     71766 142 +   4827813 ATGCATAA-TCTCCTTAGATCTTTACAACATCCAATTTAACATAATTATTATTAGCTACATTTTTAAGCTATTGAATAGAAGACAAATCATGCTTGGAATTA-CCCTAGACCTTCCCTTTCAACAGAATGTAAAGGAAT--------------CATTA
s panTro5.chr6              29042325 142 + 175400573 ATGCATAA-TCTCCTTAGATCTTTACAACATCCCATTTAACATAATTATTATTAGCTACATTTTTAAGCTATTGAATAGAAGACAAATCATGCTTGGAATTA-CCCTAGACCTTCCCTTTCAACAGAATATAAAGAAAT--------------CATTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29286407 142 + 173848474 ATGCATAA-TCTCCTTAGATCTTTACAACATCCCATTTAACATAATTATTATTAGCTACATTTTTAAGCTATTGAATAGAAGACAAATCATGCTTGGAATTA-CCCTAGACCTTCCCTTTCAACAGAATATAAAGAAAT--------------CATTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5086416 141 +   6154872 atgcataa-tctccttcgatctttacagcatccca-ttaacatagttattattagctgcattttTAAGCTATTGAATAGAAGACAAAGCATGCTTGGAATTA-CCCTAGACCTTCCCTTTCAACAGAATGGAAAGGAAT--------------CATTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106633 157 + 122973662 ATGCATGA-TCTCCTTAGACCTTTACAACATCCCAGTTTACATAATCATTATTAGCCTCATTTTTAAGGTTTTGAATAAGAGACAAATCATGCTTAGAATTACCCCTAGGCCTTTCATTTCAGCAAAATGTAAAGAAATCATTACTGTGCTAGCATTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29268006 142 + 172585720 ATGCATAA-TCTCCTTAGATCTTTACAACATCCCATTTTACTTAATTATTATTAGCCGCATTTTTAAGCTATTGAATAGGAGAAAAATCATGCTGGGAATTA-CCCTAGAACTTCCATTTCAACAGAATGTAAAGGAAT--------------CATTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28916927 142 - 170955103 ATGCATAA-TCTCCTTAGATCTTTACAACATCCCATTTTACTTAATTATTATTAGCCGCATTTTTAAGCTATTGAATAGGAGAAAAATCATGCTGGGAATTA-CCCTAGAACTTCCATTTCAACAGAATGTAAAGGAAT--------------CATTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1894727 142 -   2996164 ATGCATAA-TCTCCTTAGATCTTTACAACATCCCATTTTACTTAATTATTATTAGCCGCATTTTTAAGCTATTGAATAGGAGAAAAATCATGCTGGGAATTA-CCCTAGAACTTCCATTTCAACAGAATGTAAAGGAAT--------------CATTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1780450 142 -   2157725 ATGCATAA-TCTCCTTAGACCTTTACAACATCCCATTTTATGTAATTATTATTAGCCGCATTTTTAAGCGATTGAATAGGAGAAAAATCGTGCTGGGAATTA-CCCTAGAACTTCCATTTCAACAGAATGTAAAGGAAT--------------CATTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28234692 142 -  71996105 ATGCATAA-TCTCCTTAGATCTTTACAACATTCCATTTTACATAATTATTATTAGCCGCATTTTTAAGCTATTGAATAGGAGAAAAATCATGCTGGGAATTA-CCCTAGAACTTCCATTTCAACAGAATGTAAAGGAAT--------------CATTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1902891 142 +   2316924 ATGCATAA-TCTCCTTAGACCTTTACAACATCCCATTTTATGTAATTATTATTAGCCGCATTTTTAAGCGATTGAATAGGAGAAAAATCGTGCTGGGAATTA-CCCTAGAACTTCCATTTCAACAGAATGTAAAGGAAT--------------CATTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1776720 142 -   3067355 ATGCATAA-TCTCCTTAGATCTTTACAACATCCCATTTTACATAATTATTATTAGCCGCATTTTTAAGCTATTGAATAGGAGAAAAATCTTGCTGGGAATTA-CCCTAGAACTTCCATTTCAACAGAATGTAAAGGAAT--------------CATTA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            140061 143 -    375362 ATGCATGATTCTCCTTTGATCTTAACAACATCCCATTTTACAAAATCATTATTAATCTCACTTTGAAGCCATTGAATGGGAGACAAATCATGCTTGGAATTA-CCCTGGGCCTTCCATTTCAACAGAAGGGAAAGAAAT--------------CATTA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      143419 142 -    373274 GTGCATGA-TCTCCTTTGATCTTTACAATATCCCATTTTACAAAATCATTATTAGCCTCACTTTGAAGCCATTGAATGGGAGACAAATCATGCTTGGAATTA-CCCTAGGCCTTCCATTTCAACAGAAGGTAAAGAAAT--------------CATTA
i cebCap1.NW_016108108v1   I 870 C 0
e otoGar3.GL873742           1481605  26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=7800.000000
s hg38.chr6_GL000254v2_alt     71908 1 +   4827813 C
s panTro5.chr6              29042467 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29286549 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5086557 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106790 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29268148 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28917069 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1894869 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1780592 1 -   2157725 C
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28234834 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1903033 1 +   2316924 C
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1776862 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            140204 1 -    375362 C
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      143561 0 -    373274 C
e calJac3.chr4             171318833 9438 - 171630274 I

a score=2760.000000
s hg38.chr6_GL000254v2_alt     71909 1 +   4827813 C
s panTro5.chr6              29042468 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29286550 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5086558 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106791 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29268149 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28917070 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1894870 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1780593 1 -   2157725 T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28234835 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1903034 1 +   2316924 T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1776863 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      143561 1 -    373274 C
i cebCap1.NW_016108108v1   C 0 C 0
e saiBol1.JH378348            140205 0 -    375362 C
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=212669.000000
s hg38.chr6_GL000254v2_alt     71910 29 +   4827813 GTGTTAGGCAAGAAAACATTCAGTGCTAC
s panTro5.chr6              29042469 29 + 175400573 GTGTTAGGCAAGAAAACATTCAGTGCTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29286551 29 + 173848474 GTGTTAGGCAAGAAAACATTCAGTGCTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5086559 29 +   6154872 GTCTTAGGCAAGAAAACATTCAGTGCTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106792 29 + 122973662 GTGCTAGGCAAGAAAACATTCAATGCTGC
i nomLeu3.chr1a            C 0 I 316
s rheMac8.chr4              29268150 29 + 172585720 GTGTTAGGCAAGAAAACATTCAGTACTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28917071 29 - 170955103 GTGTTAGGCAAGAAAACATTCAGTACTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1894871 29 -   2996164 GTGTTAGGCAAGAAAACATTCAGTACTAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1780594 29 -   2157725 GTGTTAGGCAAGAAAACATTCAGTGCTAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28234836 29 -  71996105 GTGTTAGGCAAGAAAACATTCAGTACTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1903035 29 +   2316924 GTGTTAGGCAAGAAAACATTCAGTGCTAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1776864 29 -   3067355 GTGTTAGGCAAGAAAACATTCAGTACTAC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            140205 28 -    375362 GTGTTAGACAGGAAAACATTC-GTGTTAT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      143562 28 -    373274 GTGTTAGACAGGAAAACATTC-GTGTTAC
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=62252.000000
s hg38.chr6_GL000254v2_alt     71939 10 +   4827813 CATTTGACTA
s panTro5.chr6              29042498 10 + 175400573 CATTTGTCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29286580 10 + 173848474 CATTTGTCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5086588 10 +   6154872 CATTTGTCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29268179 10 + 172585720 CATTTGTCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28917100 10 - 170955103 CATTTGTCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1894900 10 -   2996164 CATTTGTCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1780623 10 -   2157725 CATTTGTCTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28234865 10 -  71996105 CATTTGTGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1903064 10 +   2316924 CATTTGTCTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1776893 10 -   3067355 CATTTGTCTA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            140233 10 -    375362 TGTTTGTCTA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      143590 10 -    373274 TGTTTGTCTA
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e calJac3.chr4             171318833 9438 - 171630274 I
e nomLeu3.chr1a             74106821 316 + 122973662 I

a score=1388360.000000
s hg38.chr6_GL000254v2_alt     71949 190 +   4827813 ATCAAATATTTCTTAA-TGAAAT-GAAACACAAGCTTCTGAGTTGAGAAAGCCTCAGTGACCTAAAGGATAAAGTATC-----------------------------------------TGATTTACAGTTTCTGTAGAGTCAGTGTCCTCACCCTGAGGTTTCTTCTCATTTGGTACTAATTTTCCTTTTTCAACTTGCTGCAGTTCTGATGTTGAAGTACTGTAGATTGTT
s panTro5.chr6              29042508 190 + 175400573 ATCAAATATTTCTTAA-TGAAAT-GAAACACAAGCTTCTGAGTTGAGAAAGCCTCAGTGACCTAAAGGATAAAGTATC-----------------------------------------TGATTCCCAGTTTCTGTACAGTCAGTGTCCTCACCCTGAGGTTTCTTCTCATTTGGTACTAATTTTCCTTTTTCAACTTGCTGCAGTTCTGATGTTGAAGTACTGTAGATTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29286590 190 + 173848474 ATCAAATATTTCTTAA-TGAAAT-GAAACACAAGCTTCTGAGTTGAGAAAGCCTCAGTGACCTAAAGGATAAAGTATC-----------------------------------------TGATTCCCAGTTTCTGTACAGTCAGTGTCCTCACCCTGAGGTTTCTTCTCATTTGGTACTAATTTTCCTTTTTCAACTTGCTGCAGTTCTGATGTTGAAGTACTGTAGATTGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5086598 189 +   6154872 ATCAAATATTTCTTAA-TGAAAT-GAAACACAAGCTTCTGAGTTGAGAAAGCCTCAGTGACCTAAAGGATAAAGTATC-----------------------------------------TTATTC-CAGTTTCTGTACAGTCAGTGTCCTCACCCTGAGGTTTCTTCTTATTTGGTACTAATTTTCCTTTTTCAACTTGCTGCAGTTCTGATGTTGAAGTACTTTAGATTGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107137 192 + 122973662 ATCAAATATTTCTTAATTGAAATAAAAACACAAGCTTCTGAGTTGAGAAAGCCTCAGTGACTTAGAGGATAAAGTATC-----------------------------------------TGATTCCTAGTTCCTGTACAGTCAATGTCCCCACCCTGAGGTTGCTTCTCATTTGGTACCAATTTTCCTTTCACAGTTGGATGCAGTTCTGATGTTGAAGTACTGTACATTATT
i nomLeu3.chr1a            I 316 C 0
s rheMac8.chr4              29268189 190 + 172585720 ACCAAATATTTCTTAA-CGAAAT-AAAACACAAGCTTCTGAGTTGAGAAGGCCTCAGTTACCTAAAGGATAAAGTATC-----------------------------------------TGATTCCCAGTTTCTGTGCAGTCAATGTTCCCACCTTGAGGTTGCTTCTCATTTGATACTAATTTTCCTTTTTCAACTTGCTGCAGTTCTGATGTTGAAGTACTGTAGATTATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28917110 190 - 170955103 ACCAAATATTTCTTAA-CGAAAT-AAAACACAAGCTTCTGAGTTGAGAAGGCCTCAGTTACCTAAAGGATAAAGTATC-----------------------------------------TGATTCCCAGTTTCTGTGCAGTCAATGTTCCCACCTTGAGGTTGCTTCTCATTTGGTACTAATTTTCCTTTTTCAACTTGCTGCAGTTCTGATGTTGAAGTACTGTAGATTATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1894910 190 -   2996164 ACCAAATATTTCGTAA-CGAAAT-AAAACACAAGCTTCTGAGTTGAGAAGGCCTCAGTTACCTAAAGGATAAAGTATC-----------------------------------------TGATTCCCAGTTTCTGTGCAGTCAATGTTCCCACCTTGAGGTTGCTTCTCATTTGGTACTAATTTTCCTTTTTCAACTTGCTGCAGTTCTGATGTTGAAGTACTGTAGATTATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1780633 190 -   2157725 ATCAAATATTTCTTAA-CGGAAT-AAAACACAAGCTTCTGAGTTGAGAAAGCCTCAGTTACCTAAAGGATAAAGTATC-----------------------------------------TGATTCCCAGTTTCTGTACAGTCAATGTTCCCACCTTGAGGTTGCTTCTTATTTGGTACTAATTTTCCTTTTTCAACTTGCTGCAGTTCTGATGTTGAAGTACTGTAGATTATT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28234875 190 -  71996105 ATCAAATATTTCTTAA-CGAAAT-AAAACACAAGCTTCTGAGTTGAGAAAGCCCCAGTTACCTAAAGGATAAAGTATC-----------------------------------------TGATTCCCAGTTTCTGTGCAGTCAATGTTCCCACCTTGAGGTTGCTTCTCATTTGGTACTAATTTTCCTTTTTCACCTTGCTGCAGTTCTGATGTTGAAGTACTGCAGATTATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1903074 190 +   2316924 ATCAAATATTTCTTAA-CGGAAT-AAAACACAAGCTTCTGAGTTGAGAAAGCCTCAGTTACCTAAAGGATAAAGTATC-----------------------------------------TGATTCCCAGTTTCTGTGCAGTCAATGTTCCCACCTTGAGGTTGCTTCTTATTTGGTACTAATTTTCCTTTTTCAACTTGCTGCAGTTCTGATGTTGAAGTACTGTAGATTATT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1776903 190 -   3067355 ATCAAATATTTCTTAA-TGAAAT-AAAACACAAGCTTCTGAGTTGAGAAAGCCTCAGTTATCTAAAGGATAAAGTATC-----------------------------------------TGACTCCCAGTTTCTGTGCAGTCAGTGTTCCCACCTTGAGGCTGCTTCTCATTTGGTACTAATTTTCCTTTTTCAACTTGCTGCAGTTCTGATGTTGAAGTACTGTAGATTATT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            140243 190 -    375362 GTCAAATATTCCTTAA-TAAAAT-ACAACACAAGCTTCTGAGTTGAGAAAGCCTCGGTGACCTAAAGGCTAAGGTATC-----------------------------------------GGATTCCCAGTTTCCGTACGGTCCATGTACCTACGCTGAGGTTGCTTCTCATTTGGTACCAATTTTCCTTTTGCAACTTGATGCAGTTCTGATGTTGGAGTCCTGTAGATTATC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      143600 231 -    373274 GTCAAATATTCCTTAA-TGAAAT-AAAGCACAAGCTTCTGAGTTGAGAAAGCCTCGGTGACCTAAAGGATAAGGTATCCTATTCCCAGTTTCTGTACCATCCATGAGGTTGCTTCTCAGTGATTCCCAGTTTCTGTACCATGCATGTCCCTACCCTGAGGTTGCTTCTCATTTGGTACCAATTTTCCTTTTGCTACTTGATGCAGTTCTGATGTTGGAGTCCTGTAGATTATC
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1481605  26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=1092.000000
s hg38.chr6_GL000254v2_alt     72139 2 +   4827813 TA
s panTro5.chr6              29042698 2 + 175400573 TA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29286780 2 + 173848474 TA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5086787 2 +   6154872 TA
i gorGor5.CYUI01015250v1   C 0 C 0
e saiBol1.JH378348            140433 0 -    375362 C
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      143831 0 -    373274 C
e calJac3.chr4             171318833 9438 - 171630274 I
e colAng1.NW_012115566v1     1777093 0 -   3067355 C
e manLeu1.NW_012104165v1     1903264 0 +   2316924 C
e chlSab2.chr17             28235065 0 -  71996105 C
e cerAty1.NW_012001495v1     1780823 0 -   2157725 C
e macNem1.NW_012011356v1     1895100 0 -   2996164 C
e macFas5.chr4              28917300 0 - 170955103 C
e rheMac8.chr4              29268379 0 + 172585720 C
e nomLeu3.chr1a             74107329 0 + 122973662 C

a score=488135.000000
s hg38.chr6_GL000254v2_alt     72141 72 +   4827813 GTCTCCTCACACAGTATGCAGGAGTTAGGGGAAAATAACTCTCAAAATGAAACAGCAATTTGAAAG--A---------------------AAAAA
s panTro5.chr6              29042700 72 + 175400573 GTCTCCTCACACAGTATGCAGGAGTTAGGGGAAAATAACTCTCAAAATGAAACAGCAATTTGAAAG--A---------------------AAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29286782 72 + 173848474 GTCTCCTCACACAGTATGCAGGAGTTAGGGGAAAATAACTCTCAAAATGAAACAGCAATTTGAAAG--A---------------------AAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5086789 72 +   6154872 GTCTCCTCACACAGTATGCAGGAGTTAGGGGAAAATAACTCTCAAAATGAAACAGCAATTTGAAAC--A---------------------AAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107329 93 + 122973662 GTCTCCTCACAAAGTATGCATGAGTTAGGTGAAAATAATACTGAAAATGATACCCCAATTTGAAAG--ACGAAAATATATTCAAAATGACAAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29268379 72 + 172585720 GTCTCCTCACACAGTATGCAGGAGTAAGGGGGAAATAGCTCTGAAATTGAAACAGCAATTTGAAAG--A---------------------AAAAA
i rheMac8.chr4             C 0 I 17
s macFas5.chr4              28917300 72 - 170955103 GTCTCCTCACACAGTATGCAGGAGTAAGGGGGAAATAGCTCTGAAATTGAAACAGCAATTTGAAAG--A---------------------AAAAA
i macFas5.chr4             C 0 I 5
s macNem1.NW_012011356v1     1895100 72 -   2996164 GTCTCCTCACACAGTATGCAGGAGTAAGGGGGAAATAGCTCTGAAATTGAAACAGCAATTTGAAAG--A---------------------AAAAA
i macNem1.NW_012011356v1   C 0 I 17
s cerAty1.NW_012001495v1     1780823 72 -   2157725 GTCTCCTCACACAGTATGCAGGAGTAAGGGGGAAATAGCTCTGAAAATGAAACAGCAATTTGAAAG--A---------------------AAAAA
i cerAty1.NW_012001495v1   C 0 I 5
s chlSab2.chr17             28235065 72 -  71996105 GTCTCCTCACACAGTATGCGGGAGTAAGGGGGAAATAGCTCTGAAAATGAAACAGCAATTTGAAAG--A---------------------AAAAA
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012104165v1     1903264 74 +   2316924 GTCTCCTCACACAGTATGCAGGAGTAAGGGGGAAATAGCTCTGAAAATGAAACAGCGATTTGAAAGGAA---------------------AAAAA
i manLeu1.NW_012104165v1   C 0 I 3
s colAng1.NW_012115566v1     1777093 72 -   3067355 GTCTCCTCACACAGTATGCAGGGGTAAGGGGGAAATAGCTCTGAAAATTAAACAACAATTTGAAAG--A---------------------AAAAA
i colAng1.NW_012115566v1   C 0 I 4
s saiBol1.JH378348            140433 72 -    375362 GTCTCCTCACAGGGTGTGCAGAAGTTAGGGAAAAACAATACTGAAACTGAAGCAGCAATTTGAAAG--G---------------------AAAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      143831 72 -    373274 GTCTCCTCAGAGGGTGTGCAGAAGTTAGGGAAAAACAATACTGAAACTGAAGCAGCAATTTGAAAG--G---------------------AAAAA
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=-11821.000000
s hg38.chr6_GL000254v2_alt     72213  8 +   4827813 GGAGG--------GAA
s panTro5.chr6              29042772  8 + 175400573 GGAGG--------AAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29286854  7 + 173848474 GGAGG---------AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5086861  9 +   6154872 GGAGG-------AAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107422 16 + 122973662 AAAAATAAACCAGGAT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28917377  8 - 170955103 GGCGG--------GGG
i macFas5.chr4             I 5 C 0
s cerAty1.NW_012001495v1     1780900  8 -   2157725 GGCGG--------GGG
i cerAty1.NW_012001495v1   I 5 C 0
s chlSab2.chr17             28235140  8 -  71996105 GGCAG--------GGG
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012104165v1     1903341  8 +   2316924 GGCGG--------GGG
i manLeu1.NW_012104165v1   I 3 C 0
s colAng1.NW_012115566v1     1777169  8 -   3067355 GGCGA--------GGG
i colAng1.NW_012115566v1   I 4 C 0
s saiBol1.JH378348            140505  8 -    375362 --------AAATCAAA
i saiBol1.JH378348         C 0 I 6
s cebCap1.NW_016108108v1      143903  8 -    373274 --------AATCAAAA
i cebCap1.NW_016108108v1   C 0 I 5
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e calJac3.chr4             171318833 9438 - 171630274 I
e macNem1.NW_012011356v1     1895172 17 -   2996164 I
e rheMac8.chr4              29268451 17 + 172585720 I

a score=3405.000000
s hg38.chr6_GL000254v2_alt     72221 7 +   4827813 AAAAAAG
s panTro5.chr6              29042780 7 + 175400573 GAAAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29286861 7 + 173848474 AAAAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5086870 7 +   6154872 AAAAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107438 7 + 122973662 AAAAAAT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28917385 4 - 170955103 GAAA---
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1780908 4 -   2157725 GAAG---
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28235148 4 -  71996105 GAAG---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1903349 4 +   2316924 GAAG---
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1777177 4 -   3067355 GAAG---
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            140519 7 -    375362 AAAAAAG
i saiBol1.JH378348         I 6 C 0
s cebCap1.NW_016108108v1      143916 7 -    373274 AAAAAAG
i cebCap1.NW_016108108v1   I 5 C 0
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e calJac3.chr4             171318833 9438 - 171630274 I
e macNem1.NW_012011356v1     1895172 17 -   2996164 I
e rheMac8.chr4              29268451 17 + 172585720 I

a score=586824.000000
s hg38.chr6_GL000254v2_alt     72228 81 +   4827813 ACCCATTACCCCCAACACAGTATTTCAACAGAGAAGTTGAAGTGGAAAAGGGAAAATGAGGCACATGCACCTGAATCTTGA
s panTro5.chr6              29042787 81 + 175400573 ACCCATTACCCCCAACACAGTATTTCAACAGAGAAGTTGAAGTGGAAAAGGGAAAATGAGGCACATGCACCTGAATCTTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29286868 81 + 173848474 ACCCATTACCCCCAACACAGTATTTCAACAGAGAAGTTGAAGTGGAAAAGGGAAAATGAGGCACATGCACCTGAATCTTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5086877 81 +   6154872 ACCCATTATCCCCAACACAGTATTTCAACAGAGAAATTGAAGTGGAAAAGGGAAAATGAGGCACATGCGCCTGAGTCTTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107445 80 + 122973662 GCCCATTAT-CCCAACACAGAATTTCAAGAGAGGAGTTGAAGTGAAAAAAGGAAAATGGAGCACATGCACCTGAGTCTTGA
i nomLeu3.chr1a            C 0 T 65210
s rheMac8.chr4              29268468 81 + 172585720 ACCCATTACCCCCAACACAGCATTTCAACAGAGAAGTTGAAGTGAAAAAGGGAAAATGGGGCACATGCACCTGAGTCTTGA
i rheMac8.chr4             I 17 C 0
s macFas5.chr4              28917389 81 - 170955103 ACCCATTACCCCCAACACAGCATTTCAACAGAGAAGTTGAAGTGAAAAAGGGAAAATGGGGCACATGCACCTGAGTCTTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895189 81 -   2996164 ACCCATTACCCCCAACACAGCATTTCAACAGAGAAGTTGAAGTGAAAAAGGGAAAATGGGGCACATGCACCTGAGTCTTGA
i macNem1.NW_012011356v1   I 17 C 0
s cerAty1.NW_012001495v1     1780912 81 -   2157725 ACCCATTACCCCCAACACAGCATTTCAACAGAGAAGTTGAAGTGAAAAAGGGAAAATGGGGCACATGCACCTGAGTCTTGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28235152 81 -  71996105 ACCCTTTATCCCCAACACAGCATTTCAACAGAAAAGTTGAAGTGAAAAAGGTAAAATGGGGCACATGCACCTGATTCTTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1903353 81 +   2316924 ACCCATTACCCCCAACACAGCATTTCAACAGAGAAGTTGAAGTGAAAAAGGGAAAATGGGGCACATGCACCTGAGTCTTAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1777181 81 -   3067355 ACTGATTACCCCCAACACAGCATTTCAACAGAGAAGTTGAAGTGAAAAAGGGAAAATGGGGCACATGCACCTGAATCTTGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            140526 81 -    375362 ATCTATTGTCCCCAACACAAAATTTCAAGAGGGCAGTTGAAGTCAAAAAGGGAAAATAGGGCATACGCGCCTGAGTGTTGA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      143923 81 -    373274 ATCTATTATCCCAAGCACAAAATTTCAAGAGGGCAGTTGAAGTAAAAAAGGGAAAATAGGGCATATGCACCTGAGTGTTGA
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=586273.000000
s hg38.chr6_GL000254v2_alt     72309 77 +   4827813 TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTCTAAGGCCCCTCATGAATGTCTGACAGAATAATTCATATAC
s panTro5.chr6              29042868 77 + 175400573 TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTCTAGGGCCCCTCATGAATGTCTGACAGAATAATTCATATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29286949 77 + 173848474 TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTCTAGGGCCCCTCATGAATGTCTGACAGAATAATTCATATAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5086958 77 +   6154872 TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTCTAGGACCCCTCATGAATGTCTGACAGAATAATTCACATAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74042315 77 + 122973662 TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTCCAGAACCCCTCATGAATGTTTGATAGAATAATTCATATAG
i nomLeu3.chr1a            T 65210 I 65468
s rheMac8.chr4              29268549 77 + 172585720 TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTCCAGGACCCCTCATGAATGTCTGACAGAATAATTCATATAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28917470 77 - 170955103 TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTCCAGGACCCCTCATGAATGTCTGACAGAATAATTCATATAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895270 77 -   2996164 TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTCCAGGACCCCTCATGAATGTCTGACAGAATAATTCATATAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1780993 77 -   2157725 TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTCCAGGACCCCTCATGAATATCTGACAGAATAATTCATATAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28235233 77 -  71996105 TGATTTTGCTGCCCATTTGCTTTCATTTTCAGTATTCCAGGACCCCTCATGAATGTCTGACAGAATAATTCATATAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1903434 77 +   2316924 TGACTTTGCTGCCCATTTGCTTTCATTTTCAGTATTCCAGGACCCCTCATGAATGTCTGACAGAATAATTCATATAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1777262 77 -   3067355 TGACTTTGCTGCACATTTGCTTTCATTTTCAGTATTCCAGAACCCCTCATGAATGTCTGACAGAATAATTCATATAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            140607 77 -    375362 TGACTTTGCTGCCCATTTGTTTCCATTTGCAGTATTCTCGGGCCCGTCCTGAATATTTGATAGAATAATTGCTGTAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      144004 77 -    373274 TGACTTTGCTGCCCATTTGTTTCCATTTTCAGTATTCTAGGGCCCATCCTGAATATTTGATAGAATAATTCCTATAG
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=312576.000000
s hg38.chr6_GL000254v2_alt     72386 42 +   4827813 AAGTACTTGTTTTTGTTCTTTCCTGGATTCCAACACAGAAAT
s panTro5.chr6              29042945 42 + 175400573 AAGTACTTATTTTTGTTCTTTCCTGGATTCCAACACAGAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287026 42 + 173848474 AAGTACTTATTTTTGTTCTTTCCTGGATTCCAACACAGAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087035 42 +   6154872 AAGTACTTATTTTTGTTCTTTCCTGGATACCAACACAGAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107860 42 + 122973662 aaaTACTTATTTTTGTTCTTTCCTGGATACCAGTAAAGAAAT
i nomLeu3.chr1a            I 65468 C 0
s rheMac8.chr4              29268626 42 + 172585720 AAGTACTTATTTTTGTTCTTTCCTGGATACCAACACAGAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28917547 42 - 170955103 AAGTACTTATTTTTGTTCTTTCCTGGATACCAACACAGAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895347 42 -   2996164 AAGTACTTATTTTTGTTCTTTCCTGGATACCAACACAGAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781070 42 -   2157725 AAGTACTTATTTTTGTTCTTTCCTGGATACCAGCACAGAAAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28235310 42 -  71996105 AAATATTTATTTTTGTTCTTTCCTGGATACCAACACAGAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1903511 42 +   2316924 AAGTACTTATTTTTGTTCTTTCCTGGATACCAGCACAGAAAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1777339 42 -   3067355 AAGTACTTATTTTTGTTCTTTCCTGGATACCAACACAGAAAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            140684 42 -    375362 AAATACATATATTTCTTTTTTCCTGGATACCAACACAGAAAC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      144081 42 -    373274 AAATACATATATTTCTTTTTTCCTGGATACCAACACAGAAAC
i cebCap1.NW_016108108v1   C 0 C 0
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=9342.000000
s hg38.chr6_GL000254v2_alt     72428 3 +   4827813 TAG
s panTro5.chr6              29042987 3 + 175400573 TAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287068 3 + 173848474 TAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087077 3 +   6154872 TAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107902 3 + 122973662 AAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29268668 3 + 172585720 AAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28917589 3 - 170955103 AAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895389 3 -   2996164 AAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781112 3 -   2157725 AAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28235352 3 -  71996105 AAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1903553 3 +   2316924 AAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1777381 3 -   3067355 AAG
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      144123 3 -    373274 AAC
i cebCap1.NW_016108108v1   C 0 C 0
e saiBol1.JH378348            140726 0 -    375362 C
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=179331.000000
s hg38.chr6_GL000254v2_alt     72431 24 +   4827813 TTAAGATTTGGAAATTCTGGACAA
s panTro5.chr6              29042990 24 + 175400573 TTAAGATTTGGAAATTCTGGACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287071 24 + 173848474 TTAAGATTTGGAAATTCTGGACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087080 23 +   6154872 TTAAGATTTGGAAATTCTGGA-AA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107905 24 + 122973662 TTAAGATTTGGAAATTCTAGACAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29268671 24 + 172585720 TTAAGATTTGGAAATTGTAGACAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28917592 24 - 170955103 TTAAGATTTGGAAATTGTAGACAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895392 24 -   2996164 TTAAGATTTGGAAATTGTAGACAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781115 24 -   2157725 TTAAGATTTGGAAATTGTAGACAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28235355 24 -  71996105 CTAAGATTTGGAAATTGTAGACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1903556 24 +   2316924 TTAAGATTTGGAAATTGTAGACAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1777384 24 -   3067355 TTAAGATTTGGAAATTGTAGACAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            140726 24 -    375362 TTAAGATTTGGAAATTCTAGACAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      144126 24 -    373274 TTAAGATTTGGAAATTCTAGACAA
i cebCap1.NW_016108108v1   C 0 I 543
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=175844.000000
s hg38.chr6_GL000254v2_alt     72455 29 +   4827813 GGGTGCCAGGCT---------TCCTGTCAGTAAGAAAA
s panTro5.chr6              29043014 29 + 175400573 GGGTGCCAGGCT---------TCCTGTCAGTAAGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287095 29 + 173848474 GGGTGCCAGGCT---------TCCTGTCAGTAAGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087103 29 +   6154872 AGGTGCCAGGCT---------TCCTGTCAGTAAGAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107929 37 + 122973662 GGGCTCCAGGCTAAAGAAATGTCCTGTCAGTAAG-AAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29268695 38 + 172585720 GGGTGCCAGTTGGAAGAAATGTCCTGTCAGTAAGAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28917616 38 - 170955103 GGGTGCCAGTTGGAAGAAATGTCCTGTCAGTAAGAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895416 38 -   2996164 GGGTGCCAGTTGGAAGAAATGTCCTGTCAGTAAGAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781139 38 -   2157725 GGGTGCCAGTTGGAAGAAATGTCCTGTCAGTAAGAAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28235379 38 -  71996105 GGGTGCCAGTTGAAAGAAATGTCCTGTCAGTAAGAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1903580 38 +   2316924 GGGTGCCAGTTGGAAGAAATGTCCTGTCAGTAAGAAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1777408 38 -   3067355 GGGTGCCAGTTGGAAGAAATGTCCTGTCAGTAAGAAAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            140750 38 -    375362 GGATGCAAGGCTGAAGAAATGTCTTCTCAGCAAGAAAA
i saiBol1.JH378348         C 0 I 340
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      144150 543 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=1652117.000000
s hg38.chr6_GL000254v2_alt     72484 342 +   4827813 CTTAGAATATTCCTGTAATTAggcctggtgtggtggctcaagcctgtaatcccagcatggtgagaggcagaggtgag--------------ccaggatttccag--------------aagagccagggcaacatggtgaaacccagtctctaccaaaa-aa------attaaaaaaaaaacaaaaccaaaaaacaaacaaacaaacaaaaagccaggcttgttgttgcatttctgtagtctcagctactcaggaggttgacataggaggatcgcttgagtccagggaggctgaggctgcagtgagctgtgatcataccactgcattccagcatgggtgacagagtgagaccctgcctcaga-a-----aaacaaaacaaagc
s panTro5.chr6              29043043 342 + 175400573 CTTAGAATATTCCTGTAATTAggcctggtgtggtggctcaagcctgtaatcccagcatggtgagaggcagaggtgag--------------ccaggatttccag--------------aagagccagggcaacatggtgaaacccagtctctaccaaaa-aa-----taataataataaaa-aaacgcaaaaaacaaacagacaaacaaaaagccaggcttcttgttgcatttctgtagtcttagctactcaggaggctgacataggtggatcgcttgagtccagggaggctgaggctgcagtgagctgtgatcatatcactgcattccagcatgggtgacagagtaagaccctgcctcaga-a-----aaacaaaacaaaGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287124 338 + 173848474 CTTAGAATATTCCAGTAATTAggcctggtgtggtggctcaagcctgtaatcccagcatggtgagaggcagaggtgag--------------ccaggatttccag--------------aagagccagggcaacatggtgaaacccagtctctaccaaaataa-----taataataataata-aaaaccaa-----aaacagacaaacaaaaagccaggcttcttgttgcatttctgtagtcttagctactcaggaggctgacataggaggatcacttgagtccagggaggctgaggctgcagtgagctgtgatcataccactgcattccagcatgggtgacagagcgagaccctgcctcaga-a-----aaacaaaacaaagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087132 348 +   6154872 CTTAGAATATTCCTGTAATTAggcctggtgtggtggctcaagcctgtaatcccagcatggtgagaggcagaggtgag--------------ccaggatttccag--------------aagagccagggcaacatggtgaaacccagtctctaccaaaa-aaattcaaaaaaaaaaaaaaacaaaaccaaagaacaaacaaacaaacaaaaagccaggcttgttgttgcatttctgtagtctcagctactcaggaggctgacataggaggatcgcttgagtccagggaggctgaggctgcagtgagctgtgatcataccactgcactccagcacgggtgacagagtgagaccctgcctcaga-a-----aaacaaaacaaagc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107966 341 + 122973662 CTTAAAATATTCCTGTAATTAggcctggtgccgtagttcccacctgtaatcccagcactttgggaggcagaagcgggcaggttgcttgagcctaggatttcaag--------------aacagctgggggaacatggtgaaacccagtttctacaaaaa-aa---------------agta------caaaagagagagagagaaagagaaagccaggcttgttgttgcatttctgtagtctcagctactcaggaggctgacatgggaggatcgcttgagtccagggaggctgaggctgcagtgagctgtgatcataccattgcactccagcatgggtgacagagtgagacccagcctcaaa-a-----aaacaaaaCAGggc
i nomLeu3.chr1a            C 0 T 65439
s rheMac8.chr4              29268733 342 + 172585720 CTTAGACTATTCCTGTAATTAggcctggtgtgctggctccagcctgtaatcccagcatggtgggaggcagaggcggg--------------ctaggatttcgagaagagccagggcgaaagagccagggcaacacggtgaaacccagtctccaccaaaa-aa-----ttccaaa----------------aaaaaaaaaaaaaaaaaaaaaagccaggcttgttgttgcatttccgtagtctcagctactcaggaggttgacatgggaggatcgcttgagtccagggaggctgagtctgcagtgagctgtgatcataccactgcactccagcatgggtgacagagtgagaccctgcctcaaaca-----aaaccaaacaaaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28917654 342 - 170955103 CTTAGACTATTCCTGTAATTAggcctggtgtgctggctccagcctgtaatcccagcatggtgggaggcagaggcggg--------------ccaagatttcgagaagagccagggcgaaagagccagggcaacacggtgaaacccagtctccaccaaaa-aa-----ttccaaa----------------aaaaaaaaaaaaaaaaaaaaaagccaggcttgttgttgcatttccgtagtctcagctactcaggaggttgacgtgggaggatcgcttgagtccagggaggctgagtctgcagtgagctgtgatcataccactgcactccagcatgggtgacagagtgagaccctgcctcaaaca-----aaaccaaacaaaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895454 330 -   2996164 CTTAGACTATTCCTGTAATTAggcctggtgtgctggctccagcctgtaatcccagcatggtgggaggcagaggcggg--------------ccaggatttcgagaagagccagggcgaaagagccagggcaacacggtgaaacccagtctccaccaaaa-aa-----ttcc----------------------------aaaaaaaaaaaaagccaggcttgttgttgcatttccgtagtctcagctactcaggaggttgacgtgggaggatcgcttgagtccagggaggctgagtctgcagtgagctgtgatcataccactgcactccagcatgggtgacagagtgagaccctgcctcaaaca-----aaaccaaacaaaac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781177 330 -   2157725 CTTAGACTATTCCTGTAATTAggcctggtgtggtggctccagcctgtaatcccagcatggtgggaggcagaggtggg--------------ccaggatttcgagaagagccagggcgaaagagccagggcaacaagttgaaacccagtctccactaaaa-aa-----ttcc-----------------------aaaaaaaaaaaaaaaaaagccaggcttgttgttgcatttccctagtctcagctactcaggaggctgacgtgggaggatcgcttgagtccagggaggctgaggctgcagtgagctgtgatcataccactgcactccagcatgggtgacagagtgagaccctgcctcaaaca----------aaacaaaac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28235417 356 -  71996105 CTTAGACTATTCCTGTAATTAggcctggtgtggtggctccagcctgtaatcccagcacagtgggaggcagaggtggg--------------ccacgatttcgagaagagccagggcgaaagagccagggcaacacggtgaaacccagtttccaccaaaa-aa-----ttcaaaaaaaaaaa--aaaaaaaaaaaaaaaaaaaaaaaaaaaaagccaggcttgttgttgcatttctgtagtctcagctactcaggaggctgacatgggaggatcacttgagtccagggaggctgaggctgcagtgagctgtgatcataccactgcactccagcatgggtgacagagtgagaccctgcctcaaaca-----aaacaaaacaaaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1903618 333 +   2316924 CTTAGACTATTCCTGTAATTAggcctggtgtggtggctccagcctgtaatcccagcatggtgggaggcagaggtggg--------------ccaggatttcgagaagagccagggcgaaagagccagggcaacaagttgaaacccagtctccactaaaa-aa-----ttc--------------------caaaaaaaaaaaaaaaaaaaaagccaggcttgttgttgcatttccctagtctcagctactcaggaggctgatgtgggaggatcgcttgagtccagggaggctgaggctgcagtgagctgtgatcataccactgcactccagcatgggtgacagagtgagaccctgcctc----------aaacaaaacaaaac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1777446 336 -   3067355 CTTAGACTATTCCTGTAATTAggcctggtgtggtggctccagcctgtaatcccagcatggtgggaggcagaggctgg--------------ccaggattttgagaagagccagggcgaaagagccagggcaacatggtgaaacccagtctccaccaaaa-aa-----ttcc---------------------------aaaaaaaaaaaaaagccaggcttgttgttgcatttctgtagtctcagctactcaggaggctgacgtgggaggatcacttgagtccagggaggctgaggctgcagtgagctgtgatcatatcactgcactacagcatgggtgacagagtgagaccctgcctcaaacaaaacaaaacaaaacaaaac
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            140788 340 -    375362 I
e otoGar3.GL873742           1481605  26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      144150 543 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=18018.000000
s hg38.chr6_GL000254v2_alt     72826 3 +   4827813 aaa
s panTro5.chr6              29043385 3 + 175400573 AAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287462 3 + 173848474 aaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087480 3 +   6154872 aaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74042868 3 + 122973662 AAA
i nomLeu3.chr1a            T 65439 C 0
s rheMac8.chr4              29269075 3 + 172585720 aaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28917996 3 - 170955103 aaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895784 3 -   2996164 aaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781507 3 -   2157725 aaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28235773 3 -  71996105 aaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1903951 3 +   2316924 aaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1777782 3 -   3067355 aaa
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            140788 340 -    375362 I
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      144150 543 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=319253.000000
s hg38.chr6_GL000254v2_alt     72829 51 +   4827813 aGTTATTTTTCCAGCAGTTTAACTGCGGAGCTATGGAGTTGACTCAAGGTA
s panTro5.chr6              29043388 51 + 175400573 AGTTATTTTTCCAGCAGTTTAACTGCAGAGCTATGGAGTTGACTCAAGGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287465 51 + 173848474 aGTTATTTTTCCAGCAGTTTAACTGCAGAGCTATGGAGTTGACTCAAGGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087483 51 +   6154872 aGTTATTTTTCCAGCAGTTTAACTGCGGAGCTATGGAGTTGACTCAAGGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74042871 43 + 122973662 AGTTCTTCTTACAGCAGTTTAA--------TGATGGAGCTGACTCAAGATA
i nomLeu3.chr1a            C 0 I 66092
s rheMac8.chr4              29269078 51 + 172585720 aGTTATTTTTCCAGCAGTTTAACTGCAGAGCTATGGAGTTGACTCAAGGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28917999 51 - 170955103 aGTTATTTTTCCAGCAGTTTAACTGCAGAGCTATGGAGTTGACTCAAGGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895787 51 -   2996164 aGTTATTTTTCCAGCAGTTTAACTGCAGAGCTATGGAGTTGACTCAAGGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781510 51 -   2157725 aGTTATTTTTCCAGCAGTTTAACTGCAGAGCTATGGAGTTGACTCAAGGTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28235776 51 -  71996105 aGTTATTTTTCCAGCAGTTTAACTGCAGAGCTATGGAGTTGACTCAAGGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1903954 51 +   2316924 aGTTATTTTTCCAGCAGTTTAACTGCAGAGCTATGGAGTTGACTCAAGGTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1777785 51 -   3067355 aGTTATTTTTCCAGCAGTTTAACTGCAGAGCTATGGAGTTGACTCAAGGTA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            141128 43 -    375362 AGTTATTCTTCCAGCAGTTTAA--------CGATGAAATTGACTCAGGATA
i saiBol1.JH378348         I 340 C 0
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      144150 543 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=611323.000000
s hg38.chr6_GL000254v2_alt     72880 97 +   4827813 CAAACCCGGTTTTTTCTAATTGCAAAATGTTTCTTGAATATACCACCACCACATATATACACTCATACAGTATAATAGTTCTTCTTCTACAGGTTTC
s panTro5.chr6              29043439 97 + 175400573 CAAACCCGGTTTTTTCTAATTGCAAAATGTTTCTTGAATATACCACCACCACATATATACACTCATACAGTATAATAGTTCTTCTTCTACAGGTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287516 97 + 173848474 CAAACCTGGTTTTTTCTAATTGCAAAATGTTTCTTGAATATACCACCACCACATATATACACTCATACAGTATAATAGTTCTTCTTCTACAGGTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087534 91 +   6154872 CAAACT---GTTTTTTTAATTGCAAACTGTTTCTTGAATATACCACCACCACATATATACACTCATACAGTATAATAG---TTCTTCTACAGGTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109006 97 + 122973662 cAAACCGAGGTTTTTCTAATTGCAAAATGTTTCTTGAATATACCACCACCACATATATACACTCATACAATATAATAGTTCTTCTTCTACAGGTTTC
i nomLeu3.chr1a            I 66092 C 0
s rheMac8.chr4              29269129 97 + 172585720 CAAACCCACGTTTTTCTAATTGCAAAATGTTTCTTGAATATACCACCACCACATATATGCACTCATACAGTATAATAGTTCTTCTTCTACAGGTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918050 97 - 170955103 CAAACCCACGTTTTTCTAATTGCAAAATGTTTCTTGAATATACCACCACCACATATATGCACTCATACAGTATAATAGTTCTTCTTCTACAGGTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895838 97 -   2996164 CAAACCCACGTTTTTCTAATTGCAAAATGTTTCTTGAATATACCACCACCACATATATGCACTCATAGAGTATAATAGTTCTTCTTCTACAGGTTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781561 97 -   2157725 CAAACCCAGGTTTTTCTAATTGCAAAATGTTTCTTAAATATACCACCACCACATATATGCACTCATACAGTATAATAGTTCTTCTTCTACAGGTTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28235827 97 -  71996105 CAAACCCAGGTTTTTCTAATTGCAAAATGTTTCTTGAATATACCACCACCACATATATGCACTCATACAGTATAATAGTTCTTCTTCTACAGGTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1904005 97 +   2316924 CAAACCCAGGTTTTTCTAATTGCAAAATGTTTCTTAAATATACCACCACCACATATATGCACTCATACAGTATAATAGTTCTTCTTCTACAGGTTTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1777836 97 -   3067355 CAAACCCAGGTTTTTCTAATTACAAAATGTTTCTTGAATATACCACCACCACATATATACACTCATACAGTATAATAGTTCTTCTTCTACAGGTTTC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            141171 97 -    375362 CAAACCCCGGTTTTTCTAATATCAAAATATTTCTTGCGTATACCACACCCCTATATCGATGCTCATACAGCATAATAGTTCTTTCACTGTATGTTTC
i saiBol1.JH378348         C 0 I 32
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      144150 543 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=107162.000000
s hg38.chr6_GL000254v2_alt     72977 18 +   4827813 TTCACATTTCTTGTGATT
s panTro5.chr6              29043536 18 + 175400573 TTCACATTTCTTGTGATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287613 18 + 173848474 TTCACATTTCTTGTGATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087625 18 +   6154872 TTGACATTTCTTGTGATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109103 18 + 122973662 TTCATATTTCTTGTGATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269226 18 + 172585720 TTCACATTTCTTGTGATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918147 18 - 170955103 TTCACATTTCTTGTGATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895935 18 -   2996164 TTCACATTTCTTGTGATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781658 18 -   2157725 TTCACATTTCTTGTGATT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28235924 18 -  71996105 TTCACATTTCTTGTGATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1904102 18 +   2316924 TTCACATTTCTTGTGATT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1777933 18 -   3067355 TTCACATTTCTTGTGATT
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            141268 32 -    375362 I
e otoGar3.GL873742           1481605 26 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      144150 543 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=26270.000000
s hg38.chr6_GL000254v2_alt     72995 9 +   4827813 TAAAAACAC---
s panTro5.chr6              29043554 9 + 175400573 TAAAAACAC---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287631 9 + 173848474 TAAAAACAC---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087643 9 +   6154872 TAAAAACAC---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109121 8 + 122973662 T-AAAACAC---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269244 8 + 172585720 T-AAAACAC---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918165 8 - 170955103 T-AAAACAC---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895953 8 -   2996164 T-AAAACAC---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781676 8 -   2157725 T-AAAACAC---
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28235942 8 -  71996105 T-AAAACAC---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1904120 8 +   2316924 T-AAAACAC---
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1777951 8 -   3067355 T-AAAACAC---
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1481631 9 -   2232465 ---TAGCAATCC
i otoGar3.GL873742         I 26 C 0
e saiBol1.JH378348            141268 32 -    375362 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      144150 543 -    373274 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=784330.000000
s hg38.chr6_GL000254v2_alt     73004 96 +   4827813 CCCCGCCCAACACACATAAATAACATCAGATCAGAAATGAATTGTAAGTGCCACAGCATATAGCATATTGGAATTTCTTAGGTTTTAAAAGTAATA
s panTro5.chr6              29043563 96 + 175400573 CCCCGCCCAACACACATAAATAACATCAAATCAGAAATGAATTGTAAGTGCCGCAGCATATAGCATATTGGAATTTCTTAGGTTTTAAAAGTAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287640 96 + 173848474 CCCCGCCCAACACACATAAATAACATCAAATCAGAAATGAATTGTAAGTGCCGCAGCATATAGCATATTGGAATTTCTTAGGTTTTAAAAGTAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087652 96 +   6154872 CCCCGCCCAACACACATAAATAACATCAAATCAGAAATGAATTGTAAGTGCCGCAGCATATAGCATATTGGAATTTCTTAGGTTTTAAAAGTAATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109129 96 + 122973662 CCCTGCCCAACACACATAAATAACATCAAATCAGAAATGAATTGTAATTGACACAGTCTATAGCATATTGGAATTTCTTAGGTTTTAAAATTAGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269252 96 + 172585720 CTCCATCCAACACACATAAATAACATCAAGTGAGAAATGAATTGTAAGTGCCACAGCATACAGCATATTGGAATTTCTTAGGTTTTAAAAGTAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918173 96 - 170955103 CTCCATCCAACACACATAAATAACATCAAGTGAGAAATGAATTGTAAGTGCCACAGCATACAGCATATTGGAATTTCTTAGGTTTTAAAAGTAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895961 96 -   2996164 CTCCGTCCAACACACATAAATAACATCAAGTGAGAAATGAATTGTAAGTGCCACAGCATACAGCATATTGGAATTTCTTAGGTTTTAAAAGTAATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781684 96 -   2157725 CTCCGTCCAACACACATAAATAACATCAAGTCGGAAAGGAATTGTAAGTGCCACAGCATATAGCATATTGGAATTTCTTAGGTTTTAAAAGTAATA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28235950 96 -  71996105 CTCCGTCCAACACACATAAATAACATCAAGTCAGAAATGAATTGTAAGTGCCACAGCATATAGCATATTGGAATTTCTTAGGTTTTAAAAGTAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1904128 96 +   2316924 CTCCGTCCAACACACATAAATAACATCAAGTCGGAAAGGAATTGTAAGTGCCACAGCATATAGCATATTGGAATTTCTTAGGTTTTAAAAGTAATA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1777959 96 -   3067355 CTCCATCCAACACACATAAATAACATCAAGTCAGAAATGAATTGTAAGTGCCACACCATATAGCATACTGGAATTTCTTAGGTTTCAAAAGTAATA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            141300 96 -    375362 CCCCACCTAATACATATAAGTAACATCAAATAAAAAATGACTTGTAAATGCCACGGTATAAAGCACATTGGAATTTCTTAGGTTTTAAAAGTAATA
i saiBol1.JH378348         I 32 C 0
s cebCap1.NW_016108108v1      144693 96 -    373274 CCCCACCTAATATAAAGAAATAACATCAAATCAAAAATGACTGGTAAATGCCACAGTATATAGCACATTGGAATTTCTTAGGTTTTAAAACTATTA
i cebCap1.NW_016108108v1   I 543 C 0
s otoGar3.GL873742           1481640 96 -   2232465 CCTCTCCCTACACACATTCATAATATTAAATCGGAAATGAATTGTAAGTGCAACAGCATACAGAATATTGGAATTTCTTTGTTTTTAAAACTAATA
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e calJac3.chr4             171318833 9438 - 171630274 I

a score=236489.000000
s hg38.chr6_GL000254v2_alt     73100 27 +   4827813 ACTTGCTAGG-TTTAAGACTTTAAATAA
s panTro5.chr6              29043659 27 + 175400573 ACTTGCTAGG-TTTAAGACTTTAAATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287736 27 + 173848474 ACTTGCTAGG-TTTAAGACTTTAAATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087748 27 +   6154872 ACTTGCTAGG-TTTAAGACTTTAAATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109225 27 + 122973662 ACTTTCTAGA-TTTAAGATTTTAAATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269348 27 + 172585720 ACTTCCTAGG-TTTAAGGCTTTAAATAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918269 27 - 170955103 ACTTCCTAGG-TTTAAGGCTTTAAATAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896057 27 -   2996164 ACTTCCTAGG-TTTAAGGCTTTAAATAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781780 27 -   2157725 ACTTCTTAGG-TTTAAGGCTTTAAATAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28236046 27 -  71996105 ACTTCCTAGG-TTTAAGGCTTTAAATAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1904224 27 +   2316924 ACTTCGTAGG-TTTAAGGCTTTAAATAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1778055 27 -   3067355 ACTTCCTAGG-TTTAAGGCTTTAAATAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328271 27 - 171630274 ACTTCCCAGG-TTGAAGACTTTAAGCAA
i calJac3.chr4             I 9438 C 0
s saiBol1.JH378348            141396 26 -    375362 ACTTGCTA-G-TTTAAGGCTTTAAATAA
i saiBol1.JH378348         C 0 I 15133
s cebCap1.NW_016108108v1      144789 26 -    373274 ACTTCCTA-G-TTTAAGACTTTAAATAA
i cebCap1.NW_016108108v1   C 0 I 18778
s otoGar3.GL873742           1481736 28 -   2232465 ATTTCCTAGGttttaaaattttaaataa
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      106678 1048 -    285216 I

a score=268521.000000
s hg38.chr6_GL000254v2_alt     73127 44 +   4827813 TTTACGTCCTGTCAGTTAACACTTCATGGAAGTCTTCAGTGGAG
s panTro5.chr6              29043686 44 + 175400573 TTTACGTCCTATCAGTTAACACTTCATGGAAGTCTTCAGTGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287763 44 + 173848474 TTTACGTCCTATCAGTTAACACTTCATGGAAGTCTTCAGGGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087775 44 +   6154872 TTTACGTCCTATGAGTTAACACTTCATGGAAGTCTTCAGTGAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109252 44 + 122973662 TTTACATACCGTCAGTTAACACTTCATGGAAGACTTCAGTGGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269375 41 + 172585720 CTTACGTCCTGTCAGTTAACACCTCATGGAAGTCTTCAGTG---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918296 41 - 170955103 TTTACGTCCTGTCAGTTAACACCTCATGGAAGTCTTCAGTG---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896084 41 -   2996164 TTTACGTCCTGTCAGTTAACACCTCATGGAAGTCTTCAGTG---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781807 41 -   2157725 TTTACGTCCTGTCAGTTAACACCTCATGGAAGTCTTCAGTG---
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28236073 41 -  71996105 TTTACATCCTGTCAGTTAACACCTCATGGAAGTCTTCAGTG---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1904251 41 +   2316924 TTTACGTCCTGTCAGTTAACACCTCATGGAAGTCTTCAGTG---
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1778082 44 -   3067355 TTTACATCCTGTCAGTTAACACCTCTTGGAAGTCTTCAGTGGAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328298 40 - 171630274 TTTATGTAATGTC----ACCGCCTCATGGAAGACTTCAGCGGGG
i calJac3.chr4             C 0 I 28
s saiBol1.JH378348            156555 40 -    375362 TTTACGTAATGTC----AACACCTCATGGAAGACCTCAGTGGAC
i saiBol1.JH378348         I 15133 I 16
s otoGar3.GL873742           1481764 43 -   2232465 aataGGCACTATCAGTTAGAACTTCATTGATGCCCCTCGTGGA-
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      144815 18778 -    373274 I

a score=117849.000000
s hg38.chr6_GL000254v2_alt     73171 21 +   4827813 AGAGTGTTACAA--atatatata
s panTro5.chr6              29043730 21 + 175400573 AGAGTGTTACAA--atatatata
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287807 21 + 173848474 AGAGTGTTACAA--atatatata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087819 21 +   6154872 AGAGTGGTACAA--atatatata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109296 21 + 122973662 AGAGTGatacaa--atatacata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269416 20 + 172585720 -GAGTGTTACAA--ATATATATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918337 20 - 170955103 -GAGTGTTACAA--ATATATATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896125 20 -   2996164 -GAGTGTTACAA--ATATATATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781848 20 -   2157725 -GAGTGTTACAA--ATATATATA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28236114 22 -  71996105 -GAGTGTTACAAATATATATATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1904292 20 +   2316924 -GAGTGTTACAA--ATATATATA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1778126 21 -   3067355 AGAGTGTTACAA--ATATATGTA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            156611 21 -    375362 AGAGTGATACAC--ATATATGCA
i saiBol1.JH378348         I 16 C 0
s otoGar3.GL873742           1481807  7 -   2232465 ----------------ATACACA
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e calJac3.chr4             171328338 28 - 171630274 I

a score=-87497.000000
s hg38.chr6_GL000254v2_alt     73192 70 +   4827813 tatatatgtgtttgtgtgt-aaatatatatatatagat------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
s panTro5.chr6              29043751 74 + 175400573 tatat--gtgtttgtgtgt-atatatatagatatagatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287828 64 + 173848474 t------gtgtttgtgtgt-atatatatagatatagat------atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087840 70 +   6154872 tatatatatgtgtttgtgt-gtgtatatatatatagat------agatagatatgtgtgtgtgtgtgtgtgtgtgtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109317  9 + 122973662 c-----------------------------atatatat---------------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269436  5 + 172585720 TCTAT------------------------------------------------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918357  5 - 170955103 TCTAT------------------------------------------------------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896145  5 -   2996164 TCTAT------------------------------------------------------------------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781868  5 -   2157725 TCTAT------------------------------------------------------------------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28236136  5 -  71996105 TCTAT------------------------------------------------------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1904312  5 +   2316924 TCTAT------------------------------------------------------------------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1778147  5 -   3067355 TCTAT------------------------------------------------------------------------
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1481814 29 -   2232465 ------AACAAAAGAGAGTGATAAAAATATACATA------------------------------------------
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            156632  0 -    375362 C
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e calJac3.chr4             171328338 28 - 171630274 I

a score=13779.000000
s hg38.chr6_GL000254v2_alt     73262 4 +   4827813 tATA
s panTro5.chr6              29043825 4 + 175400573 tATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287892 4 + 173848474 tATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087910 4 +   6154872 tATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109326 3 + 122973662 -ata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269441 3 + 172585720 -GTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918362 3 - 170955103 -GTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896150 3 -   2996164 -GTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781873 3 -   2157725 -GTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28236141 3 -  71996105 -GTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1904317 3 +   2316924 -GTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1778152 3 -   3067355 -GTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328366 4 - 171630274 TGCA
i calJac3.chr4             I 28 C 0
s otoGar3.GL873742           1481843 4 -   2232465 TGTG
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            156632 0 -    375362 C
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      144815 18778 -    373274 I

a score=200122.000000
s hg38.chr6_GL000254v2_alt     73266 26 +   4827813 C-ATTACCTTTATGGAATTTTCAGAAA
s panTro5.chr6              29043829 26 + 175400573 C-ATTACCTTTATGGAATTTTCAGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287896 25 + 173848474 CTATTACC-TTATGGAA-TTTCAGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087914 26 +   6154872 C-ATTACCTTTATGGAATTTTCAGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109329 26 + 122973662 c-atTACCTTTATGGAATTTTTTAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269444 26 + 172585720 C-ATTTCCTTTATGGAATTTTCAGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918365 26 - 170955103 C-ATTACCTTTATGGAATTTTCAGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896153 26 -   2996164 C-ATTACCTTTATGGAATTTTCAGAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781876 26 -   2157725 C-ATTACCTTTATGGAATTTTCAGAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28236144 26 -  71996105 C-ATTACCTTTATGGAATTTTCAGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1904320 26 +   2316924 C-ATTACCTTTATGGAATTTTCAGAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1778155 26 -   3067355 C-ATTACCTTTATGGAATTTTCAGAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328370 26 - 171630274 C-ATTACCTTTATCGGATTTTCAAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156632 26 -    375362 C-ATTACCTTTATCGGATTTTCAAAAA
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1481847 26 -   2232465 C-ATTACTTTGATCAAATTTGCAAAAA
i otoGar3.GL873742         C 0 I 19
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      144815 18778 -    373274 I

a score=21317.000000
s hg38.chr6_GL000254v2_alt     73292 23 +   4827813 ACAGCCaaaaaaaa-------gaaaaaaga
s panTro5.chr6              29043855 30 + 175400573 ACAGCCaaaaaaaaaaaaaaagaaaaaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287921 19 + 173848474 CAGaccaacaaaaa-----------aaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087940 21 +   6154872 ACAGCcaaaaaaca---------aaaaaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109355 11 + 122973662 ---GCCAAAAAAAT----------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269470 14 + 172585720 ACATCAAAAAGAAG----------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918391 14 - 170955103 ACATCAAAAAGAAG----------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896179 14 -   2996164 ACATCAAAAAGAAG----------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781902 14 -   2157725 ACAGCAAAAAGAAG----------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28236170 14 -  71996105 ACAGCAAAAAGAAG----------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1904346 14 +   2316924 ACAGCAAAAAGAAG----------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1778181 14 -   3067355 ACAGCAAAAAGAAG----------------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328396 12 - 171630274 CCAGC-AAAAAAT-----------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156658 13 -    375362 ACAGCAAAAAAAT-----------------
i saiBol1.JH378348         C 0 C 0
e otoGar3.GL873742           1481873 19 -   2232465 I
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      144815 18778 -    373274 I

a score=13231.000000
s hg38.chr6_GL000254v2_alt     73315 28 +   4827813 aaaaagaaacaaaaaaaC--CACAAACACC
s panTro5.chr6              29043885 28 + 175400573 aaaaagaaacaaaaaaaa--cacaaaCACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287940 28 + 173848474 gaaaaagaacaaaaaaaa--cacaaacacC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087961 28 +   6154872 aaaaagaaacaaaggaaa--cacaaaGACC
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742           1481892 30 -   2232465 ATAAAGTAGCACACAAACTTTATGGCCACC
i otoGar3.GL873742         I 19 C 0
e saiBol1.JH378348            156671  0 -    375362 C
e aotNan1.NW_018494050v1      106678 1048 -    285216 I
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e calJac3.chr4             171328408  0 - 171630274 C
e colAng1.NW_012115566v1     1778195  0 -   3067355 C
e manLeu1.NW_012104165v1     1904360  0 +   2316924 C
e chlSab2.chr17             28236184  0 -  71996105 C
e cerAty1.NW_012001495v1     1781916  0 -   2157725 C
e macNem1.NW_012011356v1     1896193  0 -   2996164 C
e macFas5.chr4              28918405  0 - 170955103 C
e rheMac8.chr4              29269484  0 + 172585720 C
e nomLeu3.chr1a             74109366  0 + 122973662 C

a score=343158.000000
s hg38.chr6_GL000254v2_alt     73343 45 +   4827813 TGGAGTTATAT----ATAGACCTCTGGGA-TTGGTGCGCAAGCGCTGTGT
s panTro5.chr6              29043913 45 + 175400573 TGGAGTTATAT----ATAGACCTCTGGGA-TTGGTGCGCAAGCGCTGTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29287968 45 + 173848474 TGGAGTTATAT----ATAGACCTCTGGGA-TTGGTGCGCAAGCGCTGTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5087989 45 +   6154872 TGGAGTTACAT----ATAGACCTATGGGA-TTGGTGCGCAAGTGCTGTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109366 44 + 122973662 TGGAGTTCTAT----ATAGACCTCTGGGG-TTGGTGTGCAAGTGTTGTA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269484 46 + 172585720 TGGAGTTATAT----ATAGACCTCTGGGATTTGGTGAGCAAGTGCTGTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918405 46 - 170955103 TGGAGTTATAT----ATAGACCTCTGGGATTTGGTGAGCAAGTGCTGTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896193 50 -   2996164 TGGAGTTATATATAGATAGACCTCCGGGATTTGGTGAGCAAGTGCTGTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781916 45 -   2157725 TGGAGTTATAT----ATAGACCTCTGGGA-TTGGTGAGCAAGTACTGTGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28236184 45 -  71996105 TGGAGTTATAT----ATAGACCTCTGGGA-TTGGTGAGCAAGTGCTGTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1904360 45 +   2316924 TGGAGTTATAT----ATAGACCTCTGGGA-TTGGTGAGCAAGTACTGTGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1778195 45 -   3067355 TGGAGTTATAT----ATAGACCTCTGGGA-TTGGTGAGCAAGTGCTGTGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328408 45 - 171630274 TGGAGATCTAT----ACACCCTTCTAGGA-TTGGCATGCAAGTGCTCTGT
i calJac3.chr4             C 0 I 38
s saiBol1.JH378348            156671 45 -    375362 TGGAGATCTAT----ACACCCTTCTAGGG-TTGGCATGCAAGTGTTGTGT
i saiBol1.JH378348         C 0 I 24
s aotNan1.NW_018494050v1      107726 45 -    285216 TGGAGTTATAT----ATACCCCTCTGGGA-TTGGTGTGCAGGTGTTGTAT
i aotNan1.NW_018494050v1   I 1048 C 0
s otoGar3.GL873742           1481922 40 -   2232465 -----GTGTAA----ACACACTTATGAGA-TCCGTGTACAAGTTTTGCAT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      144815 18778 -    373274 I

a score=75372.000000
s hg38.chr6_GL000254v2_alt     73388 27 +   4827813 TGAAGGAGTGACAA--------------------TTATGCTAAAACC--
s panTro5.chr6              29043958 27 + 175400573 TGAAGGAGTGACAA--------------------TTATGCTAAAACC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29288013 27 + 173848474 TGAAGGAGTGACAA--------------------TTATGCTAAAACC--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5088034 27 +   6154872 TGAAGGAGTGATAA--------------------CTATGCTAAAACC--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109410 27 + 122973662 TAAAGGAAAGACAA--------------------TTATGCAACAACC--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269530 23 + 172585720 TAAGGGAATGAC------------------------ATGCTAACACC--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918451 23 - 170955103 TAAGGGAATGAC------------------------ATGCTAACACC--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896243 23 -   2996164 TAAGGGAATGAC------------------------ATGCTAATACC--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781961 23 -   2157725 TAAGGGAATGAC------------------------ATGCTAAAGCC--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28236229 23 -  71996105 TAAGGGAATGAC------------------------ATGCTAAAGCC--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1904405 23 +   2316924 TAAGGGAATGAC------------------------ATGCTAAAGCC--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1778240 27 -   3067355 TAATGGAAAGACAA--------------------TTATGCTAAAACC--
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018494050v1      107771 26 -    285216 -AAGGGAGTGACAA--------------------TTACGCAAAAGCC--
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1481962 49 -   2232465 TAGGAAGGTTGCGAAGCACTGCATTGGTGACTGGTCATTACAGGACATT
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            156716 24 -    375362 I
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e calJac3.chr4             171328453 38 - 171630274 I

a score=54463.000000
s hg38.chr6_GL000254v2_alt     73415 10 +   4827813 AAAATGCAAC
s panTro5.chr6              29043985 10 + 175400573 AAAGTGCAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29288040 10 + 173848474 AAAGTGCAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5088061 10 +   6154872 AACGTGCATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109437 10 + 122973662 AAAAGGCATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269553 10 + 172585720 AAAAGGCATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918474 10 - 170955103 AAAAGGAATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896266 10 -   2996164 AAAAGGTATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781984 10 -   2157725 AAAAGGCATC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28236252 10 -  71996105 AAAAGGCATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1904428 10 +   2316924 AAAAGGCATC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1778267 10 -   3067355 AAAAGGCATC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            156740 10 -    375362 AAAAAAAACC
i saiBol1.JH378348         I 24 C 0
s aotNan1.NW_018494050v1      107797 10 -    285216 AAAGGACATC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482011 10 -   2232465 AAAATAAGTC
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e calJac3.chr4             171328453 38 - 171630274 I

a score=789410.000000
s hg38.chr6_GL000254v2_alt     73425 73 +   4827813 tgccgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatctcggc
s panTro5.chr6              29043995 73 + 175400573 tgctgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29288050 73 + 173848474 tgccgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5088071 73 +   6154872 tgccgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccatctgagctatttcggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109447 73 + 122973662 tgctgaaacccgggattgaaccaaggacttttaaaatttcagtctaacgctctcccaactgagctatttcagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269563 73 + 172585720 tgccgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918484 73 - 170955103 tgccgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896276 73 -   2996164 tgccgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1781994 73 -   2157725 tgctgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28236262 73 -  71996105 tgccgaaacccgggattgaatcagggacctttagatcttcagtctaacgctctcccaactgagctatttcggc
i chlSab2.chr17            C 0 I 14
s manLeu1.NW_012104165v1     1904438 73 +   2316924 tgccgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1778277 73 -   3067355 tgccgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328491 73 - 171630274 tgccgaaacccgggatcgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggc
i calJac3.chr4             I 38 C 0
s saiBol1.JH378348            156750 73 -    375362 tgccgaaacccgggattgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggc
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      107807 73 -    285216 tgctgaaacccaggattgaaccagggacctctaaaccttcagtctaacactctgccacctaagctatttcagc
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482021 73 -   2232465 tgccgaaacccgggatcgaaccagggacctttagatcttcagtctaacgctctcccaactgagctatttcggc
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      144815 18778 -    373274 I

a score=14792.000000
s hg38.chr6_GL000254v2_alt     73498 14 +   4827813 CACCGTGATCCTAC
s panTro5.chr6              29044068 14 + 175400573 CACTGTGATCCTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29288123 14 + 173848474 CACTGTGATCCTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5088144 14 +   6154872 CACTGTGATCTTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109520 14 + 122973662 TGCTCTAGATGTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269636 14 + 172585720 CGCTCCGGACAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918557 14 - 170955103 CGCTCCGGACAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896349 14 -   2996164 CGCTCCGGACAAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1782067 14 -   2157725 CGCTCTGCACAACT
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     1904511 14 +   2316924 CGCTCTGCACCACT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1778350 14 -   3067355 CACACCGCGTATGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328564 14 - 171630274 TACTCTGAAATGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            156823 14 -    375362 TCCCCTGGAATCGC
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      107880 14 -    285216 TGCCCTGAAGATAC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482094 14 -   2232465 TGACATGAAGAGGT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e chlSab2.chr17             28236335 14 -  71996105 I

a score=1383625.000000
s hg38.chr6_GL000254v2_alt     73512 167 +   4827813 TGCTTTTGTCATTTCTTCAAAATACAGAAACTGCCATTTGTAGGGTCAGTGTATCTTCCAA-CGCCTAATTCTGTTGTCTTCAATATCACCCGTCATTCACTCACCTCCCCTCCAC---CCAAGAAATATAAGTTCTGCTGCAATTTATGTGTG-AAATAGGATCCAATTTT
s panTro5.chr6              29044082 167 + 175400573 TCCTTTTGTCATTTCTTCAAAATACAGAAACTGCCATTTGTAGGATCAGTGTATCTTCCAA-CGCCTAATTCTGTTGTCTTCAATATCACCCGTCATTCACTCACCTCCCCTCCAC---CCAAGAAATATAAGTTCTGCTGCAATTTATGTGTG-AAATAGGATCCAATTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29288137 167 + 173848474 TCCTTTTGTCATTTCTTCAAAATACAGAAACTGCCATTTGCAGGATCAGTGTATCTTCCAA-CGCCTAATTCTGTCGTCTTCAATATCACCCGTCATTCACTCACCTCCCCTCCAC---CCAAGAAATATAAGTTCTGCTGCAATTTATGTGTG-AAATAGGATCCAATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5088158 167 +   6154872 TTCTTTTGTCATTCCTTCAAAATACAGAAACTGCCATTTGTGGGGTCAGTGTATCTTCCAA-TGCCTAATTCTGTTGTCTTCAATATCACCCGTCATTCACTCACCTCCCCTCCAC---CCAAGAAATATAAGTTCTGCTGCAATTTATGTGTG-AAATAGGATCCAATTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109534 168 + 122973662 TCTGTTAGTCATTTCTTCAAAATATAAAAACTGCCATTTGTAAGGTCAGTGTATCTTCCAA-TGCCTAATTCTGTTGTCTTCAATATCACCCGTCATTCACTCACCTCCCCCCTAA---TCCAAAAATATAAGTTCTGCTGCAATTTATGTGTGAAAATAGGATCCAATTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269650 167 + 172585720 TCGTTTTGTCATTTCTTCAAAATACAGAAACTGCCATTTGTAAGGTCAGTGTATCTTCCAG-TGCCTAATTCTGTTGTCTTCAATATCACCGGTCATTCACTCACCTTCCCTACAC---CCCAAAAATATAAGTTCTGCTGCAATTTATGTGTG-AAATAGGATCCAATTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918571 167 - 170955103 TCGTTTTGTCATTTCTTCAAAATACAGAAACTGCCATTTGTAAGGTCAGTGTATCTTCCAG-TGCCTAATTCTGTTGTCTTCAATATCACCGGTCATTCACTCACCTTCCCTACAC---CCCAAAAATATAAGTTCTGCTGCAATTTATGTGTG-AAATAGGATCCAATTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896363 167 -   2996164 TCGTTTTGTCATTTCTTCAAAATACAGAAACTGCCATTTGTAAGGTCAGTGTATGTTCCAG-TGCCTAATTCTGTTGTCTTCAATATCACCGGTCATTCACTCACCTTCCCTACAC---CCCAAAAATATGAGTTCTGCTGCAATTTATGTGTG-AAATAGGATCCAATTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1782081 156 -   2157725 TCCTTTTGTC-----------ATACAGAAACTGCCATTTGTAAGGTCAGTGTATCTTCCAG-TGCCTAATTCTGTTGTCTTCAATATCACTGGTCATTCACTCACCTTCCCTACAC---CCCAAAAATATAAGTTCTGCTGCAATTTATGTGTG-AAATAGGATCCAATTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28236349 167 -  71996105 TCCTTTTGTCATTTCTTCAAAATACAGAAACTGCCATTTGTAAGGTCAGTGTATCTTCCAA-TGCTTAATTCTGTTGTCTTCAATATCACCGGTCATTCACTCACCTTCCCTACAT---CCCAAAAATACAAGTTCTGCTGCAATTTATGTGTG-AAATAGGATCCAATTTT
i chlSab2.chr17            I 14 C 0
s manLeu1.NW_012104165v1     1904525 156 +   2316924 TCCTTTTGTC-----------ATACAGAAACTGCCATTTGTAAGGTCAGTGTATCTTCCAG-TGCCTAATTCTGTTGTCTTCAATATCACTGGTCATTCACTCACCTTCCCTACAC---CCCAAAAATATAAGTTCTGCTGCAATTTATGTGTG-AAATAGGATCCAATTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1778364 167 -   3067355 TCCTTTTGTCATTTCTTCAAAATACAGAAACTGCCATTTGTAAGGTCAGTGTATCTTCCAA-TGCCTAATTCTGTTGTCTTCAATATCACCGGTCATTCACTTACCTTCCCTACAC---CCCAAAAATATAAGTTCTGCTGCAATTTATGTGTG-AAATAGGATCCAATTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328578 165 - 171630274 TCTTTTAGCCATTGCTTCAAAACATAAAACCTGTCATTTGTAGGGTCAGTGTATCTTCCAA-TGCCTCATTCTGTTGTCTTCAATATTACCCGTCATATACTCC---TCCATTCAC---CCCAAAAATACAGATTCTGCTCCGATTTATGTCTGAAAATAGGACCCACTTTT
i calJac3.chr4             C 0 I 11
s saiBol1.JH378348            156837 168 -    375362 CCTTTCAGCTATTTCTTCAAAATGTAAAAACTGTCATTTGTAGGGTCAATCTATCTTTCAA-TACCTAATTCTGTTGTCTTTAATATTACCCATCATTTACTCA---TCCATTCACTCATCCAAAAATATAGATTCTGCTCCGATTTATGTCTGAAAATAGGACCCAATTTT
i saiBol1.JH378348         C 0 I 16
s aotNan1.NW_018494050v1      107894 168 -    285216 ACTTTTTGTCATTTCTTCAAAATACAGAAACTGTCATTTGTAGGGTCGGTGTATCTTCCAG-TGCGTAGTTCTGTTGTCTTCAATACCATCTGTCATTCACGCACTTCCCCTCCAC---CCCACAAATACAAGTTCTGCTGCAATTTATGTCTAAAAATAGGATCCAATTTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482108 143 -   2232465 TCTTTAAGGCATTCTTTCAAAATATTAAAACTTTCATTTGTAGGGTCAGCCCATATTTCAAGTGTC---TTTTACTTTTTTCAGTATCACTTG--------------------------CCAAAAAATATGAATTCAACTACTATGTGTATCCGAAAATAGGATCCAATTTT
i otoGar3.GL873742         C 0 I 12
e cebCap1.NW_016108108v1      144815 18778 -    373274 I

a score=9217.000000
s hg38.chr6_GL000254v2_alt     73679 2 +   4827813 --CC
s panTro5.chr6              29044249 2 + 175400573 --CC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29288304 2 + 173848474 --CC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5088325 2 +   6154872 --CC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109702 2 + 122973662 --CC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269817 2 + 172585720 --CC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918738 2 - 170955103 --CC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896530 2 -   2996164 --CC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1782237 2 -   2157725 --CC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28236516 2 -  71996105 --CC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1904681 2 +   2316924 --CC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1778531 2 -   3067355 --CC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328754 2 - 171630274 --CT
i calJac3.chr4             I 11 I 3
s aotNan1.NW_018494050v1      108062 2 -    285216 --CC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482263 2 -   2232465 AG--
i otoGar3.GL873742         I 12 C 0
e saiBol1.JH378348            157005 16 -    375362 I
e cebCap1.NW_016108108v1      144815 18778 -    373274 I

a score=170452.000000
s hg38.chr6_GL000254v2_alt     73681 21 +   4827813 CCAGCAAAAGATGGGAAAGAA
s panTro5.chr6              29044251 21 + 175400573 CCAGCAAAAGATGGGAAAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29288306 21 + 173848474 CCAGCAAAAGATGGGAAAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5088327 21 +   6154872 CCAGCAAAAGATGGGAAAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109704 21 + 122973662 CCAGCAAAAGACGGGAAAGAA
i nomLeu3.chr1a            C 0 I 316
s rheMac8.chr4              29269819 21 + 172585720 CCAGCAAAAGCCGGGAAAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918740 21 - 170955103 CCAGCAAAAGACGGGAAAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896532 21 -   2996164 CCAGCAAAAGACGGGAAAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1782239 21 -   2157725 CCATCAAAAGACGGGAAAGAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28236518 21 -  71996105 CCAGCAAAAGACGGGAAAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1904683 21 +   2316924 CCAGCAAAAGACGGGAAAGAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1778533 21 -   3067355 TCAGCAAAAGACGGGAAAGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328759 21 - 171630274 TTAGCAAAAGTCGAGGGAAAA
i calJac3.chr4             I 3 I 1
s saiBol1.JH378348            157021 21 -    375362 TTAGCAAAAGTCGAGAAAAAA
i saiBol1.JH378348         I 16 I 5
s aotNan1.NW_018494050v1      108064 20 -    285216 ATGGCAAAAGATGGGAAAGA-
i aotNan1.NW_018494050v1   C 0 I 1
s otoGar3.GL873742           1482265 21 -   2232465 CCGGTTGAGAACGGGTAAAAA
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      144815 18778 -    373274 I

a score=70048.000000
s hg38.chr6_GL000254v2_alt     73702 7 +   4827813 AAGGCGA
s panTro5.chr6              29044272 7 + 175400573 AAGGCGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29288327 7 + 173848474 AAGGCGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5088348 7 +   6154872 AAGGCGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110041 7 + 122973662 AAGGCGA
i nomLeu3.chr1a            I 316 C 0
s rheMac8.chr4              29269840 7 + 172585720 AAGGCGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918761 7 - 170955103 AAGGCGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896553 7 -   2996164 AAGGCGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1782260 7 -   2157725 AAGGCGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28236539 7 -  71996105 AAGGCGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1904704 7 +   2316924 AAGGCGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1778554 7 -   3067355 AAGGCGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328781 7 - 171630274 AAGGCAA
i calJac3.chr4             I 1 I 114
s saiBol1.JH378348            157047 7 -    375362 AAGGCAA
i saiBol1.JH378348         I 5 C 0
s aotNan1.NW_018494050v1      108085 7 -    285216 AAGGCGA
i aotNan1.NW_018494050v1   I 1 C 0
s otoGar3.GL873742           1482286 7 -   2232465 AGGGGGG
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      144815 18778 -    373274 I

a score=83151.000000
s hg38.chr6_GL000254v2_alt     73709 14 +   4827813 --GGAATAGGTCAAAT
s panTro5.chr6              29044279 14 + 175400573 --GGAATAGGTCAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29288334 14 + 173848474 --GGAATAGGTCAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5088355 14 +   6154872 --GGAATAGGTCAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110048 14 + 122973662 --GGAATAGGTCAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269847 12 + 172585720 --GGAACTGGTC--AT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918768 12 - 170955103 --GGAATTGGTC--AT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896560 12 -   2996164 --GGAATTGGTC--AT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1782267 14 -   2157725 --GGAATTGGTCAAAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28236546 14 -  71996105 --GGAATTGGTCAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1904711 14 +   2316924 --GGAATTGGTCAAAT
i manLeu1.NW_012104165v1   C 0 M 1700
s colAng1.NW_012115566v1     1778561 14 -   3067355 --GGAATTGGTCAAAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            157054 14 -    375362 --AGAATAAGTCGAAG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      108092 14 -    285216 --GGAACAGGTCAAAT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482293 16 -   2232465 GCAGAATGGGTAAAAG
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e calJac3.chr4             171328788 114 - 171630274 I

a score=415462.000000
s hg38.chr6_GL000254v2_alt     73723 72 +   4827813 ---------GAGGAAGATACTCCCATGCTTGGTCACCG-----TAT---------AAAACACTGCTCAGAAAACTAA-GG-----------AATTCAAAATGAAATT
s panTro5.chr6              29044293 72 + 175400573 ---------CAGGAAGATACTCCCATGCTTGGTCACCG-----TAT---------AAAACACTGCTCAGAAAACTAA-GG-----------AATTCAAAATGAAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29288348 72 + 173848474 ---------CAGGAAGATACTCCCATGCTTGGTCACCG-----TAT---------AGAACACTGCTCAGAAAACTAA-GA-----------AATTCAAAATGAAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5088369 72 +   6154872 ---------CAGGAAGATACTCCCATGCTTGGTCACCG-----TAT---------AAAACACTGCTCAGAAAACTAA-GG-----------AATTCAAAATGAAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110062 82 + 122973662 ---------CAGGAAGATGCTCCCATGCTTGTTCACCA-----TG----------GAAACACCACTCGGAAAACTAA-AGGAAATTATCTAAAACTAAAATGAAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269859 72 + 172585720 ---------CAGGAAGATATTCCCATGCTTGGTCACCG-----TGT---------AAAACACTCCTCAGAAAACTAA-GG-----------AATTCAAAATGAAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28918780 72 - 170955103 ---------CAGGAAGATATTCCCATGCTTGGTCACCG-----TGT---------AAAACACTCCTCAGAAAACTAA-GG-----------AATTCAAAATGAAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896572 72 -   2996164 ---------CAGGAAGATATTCCCATGCTTGGTCACCG-----TGT---------AAAACACTCCTCAGAAAACTAA-GG-----------AATTCAAAATGAAATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1782281 72 -   2157725 ---------CAGGAAGATATTCCCATGCTTGGTCACCG-----TGT---------AAAACACTCCTCAGAAAACTAA-GG-----------AATTCAAAATGAAATT
i cerAty1.NW_012001495v1   C 0 I 322
s chlSab2.chr17             28236560 72 -  71996105 ---------CAGGAAGATATTCCCATGCTTGGTCACCG-----TGT---------AAAACACTCCTCAGAAAACTAA-GG-----------AATTCAAAATGAAATT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1778575 72 -   3067355 ---------CAGGAAGATATTCCCATGCTTAGTCACCT-----TGT---------AAAACACTCCTCAGAAAACTAA-GG-----------AATTCAAAATGAAATT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            157068 61 -    375362 ---------CAGTAAGGTGCCCCCCTACAAGGT--------------------------CACTGCTCAGAAAACTAACGG-----------AATTCAAAAGAATATT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      108106 71 -    285216 ---------CAGGAAGATGCTTCCATGCTTGGTCACCC-----TGC----------AAACACCGCTCAGAAAACTAA-GG-----------AATTCAGAATGAAATT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482309 93 -   2232465 CAAAATATTCTTGAATATGTTTTCATGTTTGGTCATCTCCGGCTGTTTTACGACCCAAATACT--TCAGAAAACTAA-GG-----------ACATTCAAGTGAAATT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e calJac3.chr4             171328788 114 - 171630274 I
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M

a score=4034.000000
s hg38.chr6_GL000254v2_alt     73795 2 +   4827813 AT
s panTro5.chr6              29044365 2 + 175400573 AT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29288420 2 + 173848474 AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5088441 2 +   6154872 AT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110144 2 + 122973662 AT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29269931 2 + 172585720 AT
i rheMac8.chr4             C 0 I 332
s macFas5.chr4              28918852 2 - 170955103 AT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896644 2 -   2996164 AT
i macNem1.NW_012011356v1   C 0 I 306
s chlSab2.chr17             28236632 2 -  71996105 AT
i chlSab2.chr17            C 0 I 316
s colAng1.NW_012115566v1     1778647 2 -   3067355 AT
i colAng1.NW_012115566v1   C 0 I 321
s saiBol1.JH378348            157129 2 -    375362 TT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      108177 2 -    285216 AC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482402 1 -   2232465 A-
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e calJac3.chr4             171328788 114 - 171630274 I
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M
e cerAty1.NW_012001495v1     1782353 322 -   2157725 I

a score=14395.000000
s hg38.chr6_GL000254v2_alt     73797 11 +   4827813 GTAGGCAtttc
s panTro5.chr6              29044367 11 + 175400573 CTAGGCAtttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29288422 11 + 173848474 CTAGGCAtttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5088443 11 +   6154872 CTAGGCCTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110146 11 + 122973662 CTAGActtttc
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28918854 11 - 170955103 CTCGGCtttta
i macFas5.chr4             C 0 I 321
s saiBol1.JH378348            157131 11 -    375362 CTAGGCTTTTC
i saiBol1.JH378348         C 0 I 27
s aotNan1.NW_018494050v1      108179 10 -    285216 CTAGGTTTTC-
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482403  3 -   2232465 --------TTC
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e calJac3.chr4             171328788 114 - 171630274 I
e colAng1.NW_012115566v1     1778649 321 -   3067355 I
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M
e chlSab2.chr17             28236634 316 -  71996105 I
e cerAty1.NW_012001495v1     1782353 322 -   2157725 I
e macNem1.NW_012011356v1     1896646 306 -   2996164 I
e rheMac8.chr4              29269933 332 + 172585720 I

a score=113017.000000
s hg38.chr6_GL000254v2_alt     73808 17 +   4827813 cttttc----tcttttttcgg
s panTro5.chr6              29044378 17 + 175400573 cttttc----tcttttttcgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29288433 17 + 173848474 cttttc----tcttttttcgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5088454 17 +   6154872 CTTTTC----TCTTTTTTCGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110157 17 + 122973662 cttttc----tcttcttttgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29270265 17 + 172585720 CTTTTC----TCTTTTTTCGG
i rheMac8.chr4             I 332 C 0
s macFas5.chr4              28919186 17 - 170955103 CTTTTC----TCTTTTTTCGG
i macFas5.chr4             I 321 C 0
s macNem1.NW_012011356v1     1896952 17 -   2996164 CTTTTC----TCTTTTTTCGG
i macNem1.NW_012011356v1   I 306 C 0
s cerAty1.NW_012001495v1     1782675 17 -   2157725 CTTTTC----TCTTTTTTCAG
i cerAty1.NW_012001495v1   I 322 C 0
s chlSab2.chr17             28236950 17 -  71996105 CTTTTC----TCTTTTTTGGG
i chlSab2.chr17            I 316 C 0
s colAng1.NW_012115566v1     1778970 17 -   3067355 CTTTTC----TCTTTTTTAGG
i colAng1.NW_012115566v1   I 321 C 0
s saiBol1.JH378348            157169 17 -    375362 cttttc----ttttttttttt
i saiBol1.JH378348         I 27 C 0
s aotNan1.NW_018494050v1      108189 17 -    285216 CTTTTC----TCTTCTTTTGG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482406 21 -   2232465 CTATTCCGTTTCTTCTTTCAG
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e calJac3.chr4             171328788 114 - 171630274 I
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M

a score=823482.000000
s hg38.chr6_GL000254v2_alt     73825 131 +   4827813 attttct--------ttttctGGCTTGCTCTTCAATGGCATGTCATAAAGGAAC-AGAAGATTAGTGGACACTTTAACACGGTAGTGGGCTTATAGCTTCCGAAAAAA-GACATCCTGAGCGAGGTAGTTCTTTTTTTCTA
s panTro5.chr6              29044395 132 + 175400573 attttct--------ttttctGGCTTGCTCTTCAATGGCATGTCATAAAGGAAC-AGAAGATTAGTGGACACTTTAACACGGTAGTGGGCTTATAGCTTCCGAAAAAAAGACATCCTGAGCGAGGTAGTTCTTTTTTTCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29288450 132 + 173848474 attttct--------ttttctGGCTTGCTCTTCAATGGCATGTCATAAAGGAAC-AGAAGATTAGTGGACACTTTAACACGGTAGTGGGCTTATAGCTTCCGAAAAAAAGACATCCTGAGCGAGGTAGTTCTTTTTTTCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5088471 131 +   6154872 ATTTTCT--------TTTTCTGGCTTGCTCTTCAATGGCATGTCATAAAGGAAC-AGAAGATTAGTGGACACTTTAACACGGTAGTGGGCTTATAGCTTCCGAAAAAA-GACATCCTGAGCGAGTTAGTTCTTTTTTTCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110174 139 + 122973662 ctcttttttgttttgttttctGTCTTGCTCTTCAATGACACAGCAAAAAGGAGC-AGAAGATTATTGAACACGTTAACCTGGTAGTAGGTTTATAGCTTCCGACTGAA-GAAATCCTGAGCGAGCCAATTCTTTTTCTCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29270282 124 + 172585720 CTTTTCT--------TTTTCTGACTTGCTCTTCAGTGACAAGGCATAAAGGA--------ATTATTGGACACGTTAACATGGTAGTGGGCTTATAGCTTCCGAAAAAA-GACATCCTGAGCGAGGCAGTTCTTTTTTTCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28919203 124 - 170955103 CTTTTCT--------TTTTCTGACTTGCTCTTCAGTGACAAGGCATAAAGGA--------ATTATTGGACACGTTAACATGGTAGTGGGCTTATAGCTTCCGAAAAAA-GACATCCTGAGCGAGGCAGTTCTTTTTTTCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1896969 124 -   2996164 CTTTTCT--------TTTTCTGACTTGCTCTTTAGTGACAAGGCATAAAGGA--------ATTATTGGACACGTTAACATGGTAGTGGGCTTATAGCTTCCGAAAAAA-AACATCCTGAGCGAGGCAGTTCTTTTTTTCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1782692 124 -   2157725 CTTTTCT--------TTTTCTGACTTGCTCTTCAATGACAAGGCATAAAGGA--------ATTATTGGACGCGTTAACATGGTAGTGGGCTTATAGCTTCCGAAAAAA-GACATCCTGAGCGAGGCAGTTCTTTTTTTCTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28236967 124 -  71996105 CTTTTCT--------TTTTCTGACTTGCTCTTCAATGACAAGGCATAAAGGA--------ATTATTGGACACGTTAACATGGTAGTGGGCTTATAGCTTCCGAAAAAA-GACATCCTGAGCGAAGCAGttctttttttcta
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1778987 131 -   3067355 CTTTTCT--------TTTTCTGACTTGCTCTTCAGTGACAAGGCATAAAGGAAC-AGAAGATTATTGGACACGTTAACGTGGTAGTGGGCTTATAGCTTCCGAAAAAA-GATATCCTGAGCGAGGCAGTTCTTTTTTTCTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328902 131 - 171630274 TTCTTTT--------TTTAATGTCTTGCTTTTCAACGACACAGCAGAAAGGAAC-AGAGGATTGCTGGTCACGGTAATTTGGTGGCGGGTTTATAGCTTCCGATTAAA-GAAATCCTGAGTGAGACGATTCTTCTTCGCTG
i calJac3.chr4             I 114 C 0
s saiBol1.JH378348            157186 131 -    375362 ttttttt--------tttCCTGTCTTGCTGTTCGACAACACAGCAGAAAGGAAC-AGAGGATTACTGGGCACGGTAATGTGGTGGCGGGTTTATAGCTTCCGATTAAG-GAAATCCTGAGTGAGACAATTCTTTTTGGCTA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      108206 131 -    285216 CTCTTCT--------TTTTCTGTCTTGCTCTTCAATGACATGGCAAAAAGGAAC-AGAGGATTAGTGGTTGCGTTAATGTGATAATGGGTTTATAGCTTCTGACTGAA-GAAATCCTGAGTGAGCCAATTCTTTTTCTCTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482427 127 -   2232465 ----TTC--------TGCTTTAACTTTCTCGTCAATAACAGAGCAAACAGGAACTAGAGGATTATTGGTCACTTGCGAGTGACGGCGGGCTTCTGTCTTCGGCATAAA-GAAATCCTGAGCAAGCCAGTTATGTTCGCCA-
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M

a score=30589.000000
s hg38.chr6_GL000254v2_alt     73956 5 +   4827813 TTTTC
s panTro5.chr6              29044527 5 + 175400573 TTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29288582 5 + 173848474 TTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5088602 5 +   6154872 TTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110313 5 + 122973662 TTTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29270406 5 + 172585720 TTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28919327 5 - 170955103 TTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1897093 5 -   2996164 TTTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1782816 5 -   2157725 TTTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28237091 5 -  71996105 tcttc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1779118 5 -   3067355 TTTTC
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018494050v1      108337 5 -    285216 TTTTC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482554 5 -   2232465 TTCCC
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            157317 0 -    375362 C
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e calJac3.chr4             171329033 0 - 171630274 C
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M

a score=452709.000000
s hg38.chr6_GL000254v2_alt     73961 61 +   4827813 TTCCTTTTACCAGTCT-TGTGCTCACACATCCACCTTGGGTGGTACGGAGACCCAGGGAGTG
s panTro5.chr6              29044532 61 + 175400573 TTTCTTTTACCAGTCT-TTTGCTCACACATCCACCTTGGGTGGTACGGAGACCCAGGGAGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29288587 61 + 173848474 TTCCTTTTACCAGTCT-TGTGCTCACACATCCACCTTGGGTGGTACGGAGACCCAGGGAGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5088607 61 +   6154872 TTCCTTTTACCAATCT-TGTGCTCACACATCCACCTTGGGTGGTACGGAGACCCAGGGAGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110318 58 + 122973662 TTCCTTTTACCAGTCT---AGCTAACACATCCACCTTAGGTGGTATAGAGACCCAGGG-GTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29270411 61 + 172585720 TTGCTTTTACCGGTCT-TGTGCTCACACATCCACCTTGGTTGGCACGGAGACCTAGGGAGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28919332 61 - 170955103 TTGCTTTTACCGGTCT-TGTGCCCACACATCCACCTTGGTTGGCACGGAGACCCAGGGAGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1897098 61 -   2996164 TTGCTTTTACCAGTCT-TGTGCTCACACATCCACCTTGGTTGGCACGGAGACCCAGGGAGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1782821 61 -   2157725 TTGCTTTTACCAGTCT-TGTGCTCACACACCCACCTTGGTTGGCACGGAGATCCAGGGAGTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28237096 61 -  71996105 tttctttTACCAGTCT-TCTGCTCACACATCCACCTTGGTTGGCACGGAGACCCAGGGAGTG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1779123 61 -   3067355 TTGCTTTTACCAGTCT-TGTGCTCACACATCCACCTTGGTTGGTACGGAAACCCAGGGAGTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171329033 61 - 171630274 TTCCTTTCACTCATCT-GGTGCTGACACATCCCCCTTGGCTGGTACAGAGACCCAGGGAGTG
i calJac3.chr4             C 0 I 9749
s saiBol1.JH378348            157317 61 -    375362 TTCCTTTCACTTGTCT-GGTGCTGACACATCCACCCTGGGTAGTACAGAGACCCAGGGAGTG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      108342 61 -    285216 TTCGTTTTACCCGTCT-TGTGCTCACACATGCACCTCGGGTGGTATGGAGACCCAGGAAGTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482559 62 -   2232465 ATTCTTTTACTTGTCTTTGTCCTGATACGTTCACATTGGGTGATGCGGTGACTCAGAGAGTG
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M

a score=177202.000000
s hg38.chr6_GL000254v2_alt     74022 27 +   4827813 AAAATGGAAAGTATAATATGtttgttt
s panTro5.chr6              29044593 27 + 175400573 AAAATGGAAAGTATAATATGTTTGttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29288648 27 + 173848474 AAAATGGAAAGTATAATATGtttgttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5088668 27 +   6154872 AAAATGGAAAGTATAATATGtttgttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110376 24 + 122973662 GAAATGGCAAGC---ATATGTTTATTT
i nomLeu3.chr1a            C 0 I 202
s rheMac8.chr4              29270472 27 + 172585720 AAAATGGAAAGTATAATATGtttgttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28919393 27 - 170955103 AAAATGGAAAGTATAATATGtttgttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1897159 27 -   2996164 AAAATGGAAAGTATAATATGTTTGTTT
i macNem1.NW_012011356v1   C 0 I 1128
s cerAty1.NW_012001495v1     1782882 27 -   2157725 AAAATGGAAAGTATAATATGtttgttt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28237157 27 -  71996105 AAAATGGAAAGTATAATATGtttgttt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1779184 27 -   3067355 AAAATGGAAAGTATAATATGtttgttt
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            157378 27 -    375362 GAAATGGAAGCTACAACATGTTTATTT
i saiBol1.JH378348         C 0 I 4307
s aotNan1.NW_018494050v1      108403 27 -    285216 AAAATGGAAAGTATAAtttgtttgttt
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482621 26 -   2232465 GAAATGGGAAGTATCA-ATTTTAGTGT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e calJac3.chr4             171329094 9749 - 171630274 I
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M

a score=-7433.000000
s hg38.chr6_GL000254v2_alt     74049  8 +   4827813 gtttg--------ttt-------
s panTro5.chr6              29044620  8 + 175400573 gtttg--------ttt-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29288675 16 + 173848474 gtttgtttctttcttt-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5088695  4 +   6154872 g------------ttt-------
i gorGor5.CYUI01015250v1   C 0 C 0
s aotNan1.NW_018494050v1      108430  1 -    285216 g----------------------
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482647 15 -   2232465 --------GATCATTTATAACGT
i otoGar3.GL873742         C 0 C 0
e saiBol1.JH378348            157405 4307 -    375362 I
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e calJac3.chr4             171329094 9749 - 171630274 I
e colAng1.NW_012115566v1     1779211  0 -   3067355 C
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M
e chlSab2.chr17             28237184  0 -  71996105 C
e cerAty1.NW_012001495v1     1782909  0 -   2157725 C
e macNem1.NW_012011356v1     1897186 1128 -   2996164 I
e macFas5.chr4              28919420  0 - 170955103 C
e rheMac8.chr4              29270499  0 + 172585720 C
e nomLeu3.chr1a             74110400 202 + 122973662 I

a score=614530.000000
s hg38.chr6_GL000254v2_alt     74057 167 +   4827813 ctttgtttctttgttttgagatggagt----cccgctctgtctcccaggctggagtgcagtggcacgatctggacttagtgcaacctccgtctttcaggttcaagcgattctcctgactcagtctcttccagtaggtgggattacaggcgcgccccaccacgcccagctaa
s panTro5.chr6              29044628 167 + 175400573 ctttctttctttgttttgagatggagt----cccgctctgtctcccaggctggagtgcagtggcacgatctggacttagtgcaacctccgtctttcaggttcaagcgattctcctgactcagtctcttccagtaggtgggattacaggcgcgcgccaccaagcccagctaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29288691 167 + 173848474 ctttctttctttgttttgagatggagt----cccgctctgtctcccaggctggagtgcagtggcacgatctggacttagtgcaacctccgtctttcaggttcaagcgattctcctgactcagtctcttccagtaggtgggattacaggcgcgcgccaccaagcccagctaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5088699 167 +   6154872 ctttctttctttgttttgagatggagt----cccgctctgtctccgaggctggagtgcagtggcacgatctggactcagtgcaacctccgtctttcaggttcaagcgattctcctgactcagtctcttccagtaggtgggattacaggcgcgcgccaccacgcccagctaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29270499 167 + 172585720 ctttgtttctttgttttgagacggagt----ctcgctctgtcgcccgggctagagtgcagtggcgcgatctgaactcactgcaacctccatcttccaggttcaagcgattctcccgactcagtctcttccagtaggcgggattacaggcgcgcgccaccacgcccagctaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28919420 167 - 170955103 ctttgtttctttgttttgagacggagt----ctcgctctgtcgcccgggctagagtgcagtggcgcgatctgaactcactgcaacctccatcttccaggttcaagcgattctcccgactcagtctcttccagtaggcgggattacaggcgcgcgccaccacgcccagctaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1782909 167 -   2157725 ctttgtttctttgttttgagatggagt----ctagctctgtagcccgggctagagtgcagtggcgcgatctgaactcactgcaacctccatcttccaggttcaagcgattctcccgactcaatctcttccagtaggcgggattacaggcgcgcgcaaccacgcccagctaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28237184 171 -  71996105 ctttgtttctttgttttgagacggagtctcgctcgctctgtcgcccgggctagagtgcagtggcgcgatctgaactcactgcaacctccatcttccaggttcaagccgttctcccgactcagtctcttccagtaggcgggattacaggcgcgcgccaccatgcccagctac
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1779211 165 -   3067355 ctttgtttctttgttttgagacggagt----ctcgctctgtcacccgggctagagtgcagtggcacgatctgaactcactgcaacctccatcttccaggttcaagcgattctcccgactcagtctcttccagtaggcgggattacag--gcgtgccaccacgcccagctaa
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018494050v1      108431 152 -    285216 --------------tttgacacagaat----cttgctctgtcgcccaggctggagtgcagt-ctgctgtctggactcactgcaacctccatctcccgggttcaagtgattctcctgactcagccttccccagttgctgggattaaaggcgtgcaccaccacgaccagctaa
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482662 135 -   2232465 Cttttttttttttttttaagacggcgg-------------------------------ggtggggagttccctacatagca----cttaaactcttggactcacgggatcctctcgcctcgg-cttcgggaatagctgggactacaggcgtgctccaccgcatccagcCAA
i otoGar3.GL873742         C 0 I 2574
e saiBol1.JH378348            157405 4307 -    375362 I
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e calJac3.chr4             171329094 9749 - 171630274 I
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M
e macNem1.NW_012011356v1     1897186 1128 -   2996164 I
e nomLeu3.chr1a             74110400 202 + 122973662 I

a score=1600192.000000
s hg38.chr6_GL000254v2_alt     74224 459 +   4827813 tttttttgtattattagtagagacgaagtttcaccatgttgatcagtctggtctcgcctcggcctcccaaagtgctaggattacaggcttgagccaccgttcccggccTATTCCTTGGAGTTCAGAGAATTGTGGTCTGCACATTGATGCATAAGAATTGTTTTTTTTTTT------CCAgctgggtgcagtggctcacgcctgtaatcccagcac-tttgggaggccaaggcgagcagatcgcctgaggtcaggagttggagaccagcctgtccaacatagtgaaaccccatgttgtctctactgaaaacacaaaaattagccccgcgtcgaggcgcgcccctgtagtcccagcta------------------cagaatctcttgaacccaggaggcagaggttgcagtgagccgagatcacaccactacactccagcctgggtgacagagcaagactccatctca-----------------aaaaaaaaaaaaaaaa-----------------
s panTro5.chr6              29044795 465 + 175400573 tttttttgtattattagtagagacgaagtttcaccatgttgatcagtctggtctcgcctcggcttcccaaagtgctaggattacaggcttgagccaccgttcccggccTATTCCTTGGGGTTCAGAGAATTGTGGTCTGCACATTGATGCATAAGAAttgtttttttttttttttttCCAgctgggtgcagtggctcacgcctgtaatcccagcac-tttgggaggccaaggagagcagatcgcctgaggtcaggagttggagaccagcctgtccaacatagtgaaaccccatgttgtctctactgaaaacacaaaaattagccccgcgtcgaggcgcgcccctgtagtcccagcta------------------cagaatctcttgaacccaggaggcagaggttgcagtgagccgagatcacaccactacactccagcctgggtgacagagcaagactccatctca-----------------aaaaaaaaaaaaaaaa-----------------
i panTro5.chr6             C 0 I 4
s panPan2.chr6              29288858 461 + 173848474 tttttttgtattattagtagagacgaagtttcaccatgttgatcagtctggtctcgcctcggcctcccaaagtgctaggattacaggcttgagccaccgttcccggccTATTCCTTGGGGTTCAGAGAATTGTGGTCTGCACATTGATGCATAAGAATTGTTTTTTTTTTT----TTCCAgctgggtgcagtggctcacgcctgtaatcccagcac-tttgggaggccaaggagagcagatcgcctgaggtcaggagttggagaccagcctgtccaacatagtgaaaccccatgttgtctctactgaaaacacaaaaattagccccgcgtcgaggcgcgcccctgtagtcccagcta------------------cagaatctcttgaacccaggaggcagaggttgcagtgagccgagatcacaccactacactccagcctgggtgacagagcaagactccatctca-----------------aaaaaaaaaaaaaaaa-----------------
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01015250v1     5088866 481 +   6154872 tttttttgtattattagtagagacgaagtttcatcatgttgatcagtctggtctcgcctcggcctcccaaagtgctaggattacaggcttgagccaccgttcccggccTATTCCTTGGGATTCAGAGAATTGTGGTCTGCACATTGATGCATAAGAAttgttttttttttt-tttttCCAgctgggtgcagtggctcacgcctgtaatcccagcac-tttgggaggacaaggcgagcagatcgcctgaggtcaggagttcgagaccagcctgtccaacatagtgaaaccccatgttgtctctactgaaaacacaaaaattagccccgcgtcgaggcgcgcccctgtagtcccagcta------------------cagaatcgcttgaacccaggaggcagaggttgcagtgagccgagatcacaccactacactccagcctgggtgacagagcaagactccatcacacaccacacacacacaccaccacacacacaAAAA-----------------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29270666 453 + 172585720 gttttttgtattattagtagagacgaggtttcaccttgttggtcagtctggtctcgcctcggcctcgcaaagcgctaggattacaggtgtgagccaccgttcctggccTATGCCTTAGGGTTCAAAGAATTGTGGTCTGCACATTGATGCGTAAGTATTGTTTTTT-----------CCGCctgggtgctgtggctcacgcctgtaatcccagcac-tttgggaggccaaggcgggcagatcacctgaggtcaggagttcgagactagcctatccaacatggtgaaaccccatgttgtctctactgaaaacacaaaaactagaccggtgtcgaggcgcgcccctgtagtccc-gcta------------------aggaattgcttgaatccaggagacggaggttgcagtgagccgagatcacaccactacactccagcctgggcaacaaagcaagactccgtctcg-----------------aaaaaaaaaaaaaaaa-----------------
i rheMac8.chr4             C 0 I 6
s macFas5.chr4              28919587 453 - 170955103 gttttttgtattattagtagagacgaggtttcaccttgttggtcagtctggtctcgcctcggcctcgcaaagcgctaggattacaggtgtgagccaccgttcctggccTATGCCTTAGGGTTCAAAGAATTGTGGTCTGCACATTGATGCGTAAGTATTGTTTTTT-----------CCGCctgggtgctgtggctcacgcctgtaatcccagcac-tttgggaggccaaggcgggcagatcacctgaggtcaggagttcgagactagcctatccaacatggtgaaaccccatgttgtctctactgaaaacacaaaaactagaccggtgtcgaggcgcgcccctgtagtccc-gcta------------------aggaatcgcttgaatccaggagacggaggttgcagtgagccgagatcacaccactacactccagcctgggcaacaaagcaagactccgtctca-----------------aaaaaaaaaaaaaaaa-----------------
i macFas5.chr4             C 0 I 579
s cerAty1.NW_012001495v1     1783076 447 -   2157725 gttttttgtatttttagtagagacgaggtttcatcttgttggtcagtctggtctcgcctcggcctcgcaaagcgctaggattacaggcgtgagccaccgttcccggccTACGCCTTAGGGTTCAAAGAATTGTGGTCTGCACATTGAGGCATAAGTATTGTTTTTT-----------CCGCctgggtgcggtggctcacgcctgtaatcccagcac-tttgggaggccaaggcgggcagatcacctgaggtcaggagttcgagactagcctatccaacatggtgaaaccccatgttgtctctactgaaaacacaaaaattagcccggcgtcgaggcgcgcccctgtagtctc-gcta------------------cggaattgcttgaatccaggagacggaggttgcagtgagccgagatcacaccactacactgcagcctggtcgacaaagcaaggctccgtctca-----------------aaaaaaaaaa-----------------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28237355 453 -  71996105 attttttgtattattagtagagacgaggtttcaccttgttgatcagtctggtctcgcctcggcctcgcaaagcgctaggattacaggcgtgagccaccgttcccggccTATGCCTTAGGGTTCAAAGAATTGTGGTCTGCACATTGATGCATAAGTATTGTTTTTT-----------CCggctgggtgcggtggctcacgcctgtaatcccagcac-tttgggaggccaaggcgggcagatcacctgaggtcagaagttcgagactagcctatccaacatggtgaaaccccatgttgtctctactgaaaacacaaaaattagcccggcatcgaggcgcgctcctgaagtccc-gcta------------------cggaatcgcttgaatccaggagatggaggttgcagtgagccgagatcacaccactacactccagcctggtcgacaaagcaagacttcgtctca-----------------aaataaataaataaat-----------------
i chlSab2.chr17            C 0 I 19
s colAng1.NW_012115566v1     1779376 453 -   3067355 gttttttgtattattagtagagacgaggtttcacctttttggtcagtctggtctcgcctcggcctcgcaaagcgctaggattacaggagtgagccaccgtttccggccTATGCCTTAGGGTTCAAAGAATTGTGGTCTGCACATTGATGCATAAGTATTGTTTTTT-----------CCGCctgggtgcagtggctcacgcctgtaatgccagcac-tttgggaggccaaggcgggcagatcacctgaggtcagaagttcgagactagcctatccaacatggtgaaactccgtgttgtctctactgaaaacacaaaaattagcccggcgtcgagacgcgcccctgtagtccc-gcta------------------cggaatcacttgaacccaggagacggaggttgcagtgagccgagatcacaccactacactccagcctgggcgacaaagcaagactccgtctca-----------------aaaaaaaaaaaaaaaa-----------------
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018494050v1      108583 485 -    285216 tttttttgtattattagtagagatg-ggtttcaccatgttggccaggctggtctcgctctggcctcccaaagtgctaggattacagatgtaagccactgcgcccagccTATTCCTTAGGGTTCAAAGAATTGTGGTCTGCTTATTGGTGCATAAGAATTTTTTTTTTT---------CTggctgggcgtggtggctctcgcctgtaatcccagcacttttggaaggccaaggcg-gcagatcacctgaggtcaggagctcaagaccaacctaatcaacatggtgaaaccccat-ttgtctctactaaaagtacaaaaattagcctggggtcgaggtgcccacctgtagtcccagctattcggaaggccgaggcaccagaatcgcttgaacccgggaggccgatgttgcagtgagcccagattacatcactgcactccagcctgggtgacag----agactccatatca-----------------aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
i aotNan1.NW_018494050v1   C 0 C 0
e saiBol1.JH378348            157405 4307 -    375362 I
e otoGar3.GL873742           1482797 2574 -   2232465 I
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e calJac3.chr4             171329094 9749 - 171630274 I
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M
e macNem1.NW_012011356v1     1897186 1128 -   2996164 I
e nomLeu3.chr1a             74110400 202 + 122973662 I

a score=-4362.000000
s hg38.chr6_GL000254v2_alt     74683 2 +   4827813 -TT
s panTro5.chr6              29045264 2 + 175400573 -TT
i panTro5.chr6             I 4 C 0
s panPan2.chr6              29289320 2 + 173848474 -TT
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01015250v1     5089347 2 +   6154872 -TC
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012001495v1     1783523 1 -   2157725 -T-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28237827 1 -  71996105 -T-
i chlSab2.chr17            I 19 C 0
s colAng1.NW_012115566v1     1779829 1 -   3067355 -T-
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018494050v1      109068 2 -    285216 TT-
i aotNan1.NW_018494050v1   C 0 C 0
e saiBol1.JH378348            157405 4307 -    375362 I
e otoGar3.GL873742           1482797 2574 -   2232465 I
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e calJac3.chr4             171329094 9749 - 171630274 I
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M
e macNem1.NW_012011356v1     1897186 1128 -   2996164 I
e macFas5.chr4              28920040 579 - 170955103 I
e rheMac8.chr4              29271119 6 + 172585720 I
e nomLeu3.chr1a             74110400 202 + 122973662 I

a score=86015.000000
s hg38.chr6_GL000254v2_alt     74685 25 +   4827813 GCTTTTTACATACACATCTGTAATC
s panTro5.chr6              29045266 25 + 175400573 GCTTTTTACATACACATCTGTAATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29289322 25 + 173848474 GCTTTTTACATACACATCTGTAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5089349 24 +   6154872 GC-TTTTACGTACACATCTGTAATC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29271125 25 + 172585720 GCTTTTTACATACACATCTGTGATC
i rheMac8.chr4             I 6 C 0
s macNem1.NW_012011356v1     1898314 25 -   2996164 GCTTTTTACATACACATCTGTGATC
i macNem1.NW_012011356v1   I 1128 C 0
s cerAty1.NW_012001495v1     1783524 25 -   2157725 GCTTTTTACATACACATCTGTGATC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28237828 25 -  71996105 GCTTTTTACATACACATCTGTGATC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1779830 25 -   3067355 GCCTTTTACATACACATCTGTGATC
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018494050v1      109070 21 -    285216 GCTTTTTACAT----ATCTTTGATC
i aotNan1.NW_018494050v1   C 0 C 0
e saiBol1.JH378348            157405 4307 -    375362 I
e otoGar3.GL873742           1482797 2574 -   2232465 I
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e calJac3.chr4             171329094 9749 - 171630274 I
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M
e macFas5.chr4              28920040 579 - 170955103 I
e nomLeu3.chr1a             74110400 202 + 122973662 I

a score=85634.000000
s hg38.chr6_GL000254v2_alt     74710 29 +   4827813 ATGAGAT--------TGTAtttatttatttttatttt
s panTro5.chr6              29045291 29 + 175400573 ATGAGAT--------TGTAtttatttatttttatttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29289347 29 + 173848474 ATGAGAT--------TGTAtttatttatttttatttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5089373 28 +   6154872 ATGAGAT--------TGTAtttattta-ttttatttt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29271150 25 + 172585720 ATGAGAt------------tttatttatttttgtttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28920619 25 - 170955103 ATGAGAt------------tttatttatttttgtttt
i macFas5.chr4             I 579 C 0
s macNem1.NW_012011356v1     1898339 25 -   2996164 ATGAGAt------------tttatttatttttgtttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1783549 25 -   2157725 ATGAGAt------------tttatttatttttatttt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28237853 25 -  71996105 ATGAGAt------------tttatttatttttatttt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1779855 37 -   3067355 ATGAGATtttatttatttatttatttatttttatttt
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018494050v1      109091 32 -    285216 AAGAATT-----TTTTCttttcttttctttttttttt
i aotNan1.NW_018494050v1   C 0 C 0
e saiBol1.JH378348            157405 4307 -    375362 I
e otoGar3.GL873742           1482797 2574 -   2232465 I
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e calJac3.chr4             171329094 9749 - 171630274 I
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M
e nomLeu3.chr1a             74110400 202 + 122973662 I

a score=6600.000000
s hg38.chr6_GL000254v2_alt     74739 1 +   4827813 g
s panTro5.chr6              29045320 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29289376 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5089401 1 +   6154872 g
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110602 1 + 122973662 g
i nomLeu3.chr1a            I 202 C 0
s rheMac8.chr4              29271175 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28920644 1 - 170955103 g
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1898364 1 -   2996164 g
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1783574 1 -   2157725 g
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28237878 1 -  71996105 g
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1779892 1 -   3067355 g
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018494050v1      109123 1 -    285216 g
i aotNan1.NW_018494050v1   C 0 C 0
e saiBol1.JH378348            157405 4307 -    375362 I
e otoGar3.GL873742           1482797 2574 -   2232465 I
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e calJac3.chr4             171329094 9749 - 171630274 I
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M

a score=504682.000000
s hg38.chr6_GL000254v2_alt     74740 82 +   4827813 acagtgtccca-------ctctgccagactggagtgcagtg--gcaatctcctctcactgcaactttcacct-cctggctcaatcagttc-tt
s panTro5.chr6              29045321 82 + 175400573 acagtgtccca-------ctctgccagactggagtgcagtg--gcaatctcctctcactgcaactttcatct-cctggctcaatcagttc-tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29289377 82 + 173848474 acagtgtccca-------ctctgccagactggagtgcagtg--gcaatctcctctcactgcaactttcatct-cctggctcaatcagttc-tt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5089402 82 +   6154872 acagtgtccca-------ctctgctagactggagtgcagtg--gcaacctcctctcactgcaactttcacct-cctggctcaatcagttc-tt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110603 82 + 122973662 acagggtccca-------ctctgccaggctggagtgcagtg--gcaatctcctctcgttgcaactttcgcct-cccagctcaatcagttc-tc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29271176 82 + 172585720 acagtgtccca-------ctctaccagactggagtgcagtg--gcaatctcctctcactgcaactttcacct-gctgcctcaatcagttc-cc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28920645 82 - 170955103 acagtgtccca-------ctctaccagactggagtgcagtg--gcaatctcctctcactgcaactttcacct-gctgcctcaatcagttc-cc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1898365 82 -   2996164 acagtgtccca-------ctctaccagactggagtgcagtg--gcaatctcctctcactgcaactttcacct-gctgcctcaatcagttc-cc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1783575 82 -   2157725 acaatgtccca-------ctctaccagactggagtgcagtg--gcaatctcctctcactgcaactttcacct-gttgcctcaatcagttc-cc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28237879 82 -  71996105 acagtgtccca-------ctctaccagactggagtgcagtg--gtaatctcctctcactgcaactttcacct-gctgcctcaatcagttc-cc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1779893 82 -   3067355 acagtgtccca-------ctctaccagactggagtgcagtg--gcaatctcctctcactgcaactttcacct-gctgcctcaatcagttc-cc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171338843 92 - 171630274 ACAGGGTTCCACTTctctgttacccaggcaggagtgcggtggtgcaatgtcggctcactgcgacctctgcctacccggctcaatccatcc-tc
i calJac3.chr4             I 9749 C 0
s saiBol1.JH378348            161712 93 -    375362 acagggttccactactctgttacccaggcaggagtgcagtggtgcaatggcggctcacggcaacctctgcctacccagctcaatccaaccttc
i saiBol1.JH378348         I 4307 C 0
s aotNan1.NW_018494050v1      109124 82 -    285216 acagggtccca-------gtctggcagcctggagcacagcg--gcaatctcctctcacggcaactttcacct-cctagctcaaccagccc-tc
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1482797 2574 -   2232465 I
e cebCap1.NW_016108108v1      144815 18778 -    373274 I
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M

a score=109515.000000
s hg38.chr6_GL000254v2_alt     74822 11 +   4827813 ccacctcagcc
s panTro5.chr6              29045403 11 + 175400573 ccacctcagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29289459 11 + 173848474 ccacctcagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5089484 11 +   6154872 ccacctcagcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110685 11 + 122973662 ccacctcagcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29271258 11 + 172585720 ccacctcagcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28920727 11 - 170955103 ccacctcagcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1898447 11 -   2996164 ccacctcagcc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1783657 11 -   2157725 ccacctcagcc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28237961 11 -  71996105 ccacctcagcc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1779975 11 -   3067355 ccacctcagcc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171338935 11 - 171630274 ccacctcagcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            161805 11 -    375362 ccacctcagcG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      163593 11 -    373274 ccacctcagcc
i cebCap1.NW_016108108v1   I 18778 C 0
s aotNan1.NW_018494050v1      109206 11 -    285216 ccacctcagcc
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1482797 2574 -   2232465 I
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M

a score=955386.000000
s hg38.chr6_GL000254v2_alt     74833 118 +   4827813 tAGAAGTT-TTATATCAATTCAAAAGTGTCAAGACATTGGACTCCTCTTGAT--AAATAACTTAAGAACAATTTAAGACGTTTACAGAATTTCAGAAACAGTTCTCTCTGGAATGAGGGAA
s panTro5.chr6              29045414 118 + 175400573 tAGAAGTT-TTATATCAATTCAAAAGTGTCAAGACATTGTACTCCTCTTGAT--AAATAACTTAAAAACAATTTAAGAAGTTTACAGAATTTCAGAAACAGTTCTCTCTGGAATGAGGGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29289470 118 + 173848474 tAGAAGTT-TTATATCAATTCAAAAGTGTCAAGACATTGTACTCCTCTTGAT--AAATAACTTAAAAACAATTTAAGAAGTTTACAGAATTTCAGAAACAGTTCTCTCTGGAATGAGGGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5089495 117 +   6154872 tAGAAGTT-TTATATCAATTCAAAAGTGTCAAGACATTGGACTCCTCTTGAT--AAATAACTTAAAAACAATTTAAGAC-TTTACAGAATTTCAGAAACAGTTCTCTCTGGAATGAGGGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110696 118 + 122973662 tAGAAATTCTTATATCACTTCAAAAGTGTGAAAACATTGGACTCCTCTCGTT--AAATAACTTAGAAACAATTTCAGAG-TTTACCGAATTTCAGAAACAATCCTCTCTGGAATGAGGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29271269 118 + 172585720 tAGAAATT-TTATATCAATTCGAAAGTGTCAAGATATTGGAATCCTCTTGCT--AAATAACTTAAAAACAATTTAAGACGTTTACAGAATTTCAGAAACAATTCTCTCTGGAATGAAAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28920738 118 - 170955103 tAGAAATT-TTATATCAATTCGAAAGTGTCAAGATATTGGAATCCTCTTGCT--AAATAACTTAAAAACAATTTAAGACGTTTACAGAATTTCAGAAACAATTCTCTCTGGAATGAAAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1898458 118 -   2996164 tAGAAATT-TTATATCAATTCGAAAGTGTCAAGATATTGGAATCCTCTTGCT--AAATAACTTAAAAACAATTTAAGACGTTTACAGAATTTCAGAAACAATTCTCTCTGGAATGAAAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1783668 118 -   2157725 tAGAAATT-TTATATCAATTCAAAAGTGTCAAGACATTGGAATCCTCTTGCT--AAATAACTTAGAAACAATTTAAGACGTTTACAGAATTTCAGAAACAATTCTCTCTGGAATGAGAGAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28237972 113 -  71996105 tAAAAATT-TTATATCAATTCAAAAGTGTCAAGACATTGGAATCCTCTTGCC--AAATAA-----AAACAATTTAAGACGTTTACAGAATTTCAGAAACACTTCTCTCTGGAATGAGAGAA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1779986 120 -   3067355 tAGAAATT-TTATATCAATTCAAAAGTGTCAAGACATTGGACTCCTCTTGCTAAAAATAACTTAAAAACAATTTAAGACGTTTACAGAATTTCAGAAACAATTGTCTCTGGAATGAGAGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171338946 114 - 171630274 tAGAAATTCTTAGATGAATTCAAAAGTGCCAAGGCATTGGA-----CTTGTT--AAATAATGAGGAAACAATTTCGGACGTTTACAGAGTTTCAGAAACAACTCTCTGTGGAATGAGGAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            161816 114 -    375362 TAGAAATTCTTATATGCATTCAAAAGTGCCAAAGCATTGGA-----CTTGTT--AAACAATGAAGAAACAATTTCAGACATTTACAGAATTTCAGAAACAACTCTCTCTGGAAGGAAGAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      163604 114 -    373274 tAGAAATTCTTATATGAATTCAAAAATGCCAAGGCATTGGA-----CTTGTT--AAATAATGAAGAAACAATTTTAGACATTTACAGAATTTCAGAAACAACTCTCTCTGGAATGAGGAAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      109217 118 -    285216 tAGAAATT-TTATATCAATTGAAAAGTGTCAAGACATTGGACTCCTCTTGCT--AAATAACTTGGAAACAATTAAAGACGTTTACAGAATTTCAGAAACAATCCTCTCCGGAATGAGGAAA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1485371 106 -   2232465 TAGAAATTCTTATATCAATTAGAAAGTGCCAAGAT-----------TTTATT--AAGTAATATAGAAACAGTTTCAGAGGTTTTCAGAATTTCAGAAACAGTCCTCTATGAAATGAGAA--
i otoGar3.GL873742         I 2574 C 0
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M

a score=5190.000000
s hg38.chr6_GL000254v2_alt     74951 1 +   4827813 T
s panTro5.chr6              29045532 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29289588 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5089612 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110814 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29271387 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28920856 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1898576 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1783786 1 -   2157725 T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28238085 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1780106 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339060 1 - 171630274 C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            161930 1 -    375362 C
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      163718 1 -    373274 C
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1485477 1 -   2232465 T
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      109335 0 -    285216 C
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M

a score=420473.000000
s hg38.chr6_GL000254v2_alt     74952 49 +   4827813 TGCTATGGCCAATAATTACTTGCAAACTGAATTTTAATAAAACCCTCTC
s panTro5.chr6              29045533 49 + 175400573 TGCTATGGCCAATAATTACTTGCAAACTGAATTTTAATAAAACCCTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29289589 49 + 173848474 TGCTATGGCCAATAATTACTTGCAAACTGAATTTTAATAAAACCCTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5089613 49 +   6154872 TGCTATGGCCAATAATTACTTGCAAACTGAATTTTAATAAAACCCTCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110815 49 + 122973662 AGCTACAGCCAACAACGACTTGCAAATTGAATTTTAATAAAACCGTCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29271388 49 + 172585720 TGCTGTGGCCAATAATTACTTGCAAACTGAATTTTAATAAAACCCTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28920857 49 - 170955103 TGCTGTGGCCAATAATTACTTGCAAACTGAATTTTAATAAAACCCTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1898577 49 -   2996164 TGCTGTGGCCAATAATTACTTGCAAACTGAATTTTAATAAAACCCTCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1783787 49 -   2157725 TGCTGTGGCCAATAATTACTTGCAAACTGAATTTTAATAAAATGCTCTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28238086 49 -  71996105 TGCTGTGGCCAATAATTACTTGCAAACTGAATTTTAATAAAACACTCTC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1780107 49 -   3067355 TGCTGTAGCCAATAATTATTTGCAAACTGAATTTTAATAAAACCCTCTC
i colAng1.NW_012115566v1   C 0 I 11
s calJac3.chr4             171339061 49 - 171630274 TGCTGCAGCTGGCGACGACTTGCAAACTGAATTTTAATAAAACCGTCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            161931 49 -    375362 TGTTGCAGCTGACGATGAGTTGCAAACTGAATTTGAATAAAACCGTCCG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      163719 49 -    373274 TGCTGTAGCTGACGATGACTTGCAAACTGAATTTTAATAAAACCGTCCC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      109335 49 -    285216 AGCTGCGGCCAACGACGACTTGCAAACTGAATTTTAATAAAACCGTCCC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1485478 48 -   2232465 AGCTGTGGCCAACTATGACTTACAAAGTGAATTTTGACAAAACCCTCC-
i otoGar3.GL873742         C 0 C 0
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M

a score=199096.000000
s hg38.chr6_GL000254v2_alt     75001 23 +   4827813 TATGTCTGGACAGTTTTCAAACT
s panTro5.chr6              29045582 23 + 175400573 TATGTCTGGACAGTTTTCAAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29289638 23 + 173848474 TATGTCTGGACAGTTTTCAAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5089662 23 +   6154872 TATGTCTGGACAGTTTTCAAACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110864 23 + 122973662 TATGTCTGGACAGTTTTCAAACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29271437 23 + 172585720 TATGTCTGAACAGTTTTCAAACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28920906 23 - 170955103 TATGTCTGGACAGTTTTCAAACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1898626 23 -   2996164 TATGTCTGGACAGTTTTCAAACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1783836 23 -   2157725 TGTGTCTGGACAGTTTTCAAACT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28238135 23 -  71996105 TATGTCTGGACAGTTTTCAAACT
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             171339110 23 - 171630274 TATGTTCGGATACTTTACAAACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            161980 23 -    375362 TATGTTTGGATAGTTTTCAAACT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      163768 23 -    373274 TATGTTTGGATAGTTTTCAAACT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      109384 23 -    285216 TATGTCTGGATAGTTTTCCAACT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1485526 22 -   2232465 -ATGCCTGGACAGTTTTCAAACT
i otoGar3.GL873742         C 0 C 0
e colAng1.NW_012115566v1     1780156 11 -   3067355 I
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M

a score=280473.000000
s hg38.chr6_GL000254v2_alt     75024 31 +   4827813 GAGTCTCCTATTCTGAAAGAGTCAAGGCTTT
s panTro5.chr6              29045605 31 + 175400573 GAGTCTCCTATTCTGAAAGAGTCAAGGCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29289661 31 + 173848474 GAGTCTCCTATTCTGAAAGAGTCAAGGCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5089685 31 +   6154872 GAGTCTCCTATTCTGAAAGAGTCAAGGCTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110887 31 + 122973662 CGGTCTCCTATTCCGAGAGAGTCCAGGCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29271460 31 + 172585720 GAGTCTCCTGTTCTGAAAGAGTCGAGGCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28920929 31 - 170955103 GAGTCTCCTGTTCTGAAAGAGTCGAGGCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1898649 31 -   2996164 GAGTCTCCTATTCTGAAAGAGTCGAGGCTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1783859 31 -   2157725 GAGTCTCCTATTCTGAAAGAGTCGAGGCTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28238158 31 -  71996105 GAGTCTCCTATTCTGAAAGAGTCGAGGCCTT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1780167 31 -   3067355 GAGTCTCCTATTCTGAAAGAGTCAAGGCTTT
i colAng1.NW_012115566v1   I 11 I 303
s calJac3.chr4             171339133 31 - 171630274 CAGTCTCCTATTCTGAGAGAGTCCAGGCTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            162003 31 -    375362 CAGTCTCCTATTCTGAGAGAGTCCAGCTTTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      163791 31 -    373274 CAGTCTCCTATTCTGAGAGAGTCCAGGCTTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      109407 31 -    285216 CGGTCTCCTATTCCGAGAAAGCCCAGGCTTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1485548 28 -   2232465 --GTCTCTTATT-GGAAAGAGTCAAGGTTTT
i otoGar3.GL873742         C 0 C 0
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M

a score=12000.000000
s hg38.chr6_GL000254v2_alt     75055 1 +   4827813 C
s panTro5.chr6              29045636 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29289692 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5089716 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110918 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29271491 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28920960 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1898680 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1783890 1 -   2157725 C
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28238189 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1780501 1 -   3067355 c
i colAng1.NW_012115566v1   I 303 C 0
s calJac3.chr4             171339164 1 - 171630274 C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            162034 1 -    375362 C
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      163822 1 -    373274 C
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      109438 1 -    285216 C
i aotNan1.NW_018494050v1   C 0 I 854
s otoGar3.GL873742           1485576 1 -   2232465 C
i otoGar3.GL873742         C 0 C 0
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M

a score=43080.000000
s hg38.chr6_GL000254v2_alt     75056 6 +   4827813 AG-TTTT
s panTro5.chr6              29045637 6 + 175400573 AG-TTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29289693 6 + 173848474 AG-TTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5089717 6 +   6154872 AG-TTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110919 7 + 122973662 TGTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29271492 6 + 172585720 AG-TTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28920961 6 - 170955103 AG-TTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1898681 6 -   2996164 AG-TTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1783891 6 -   2157725 GG-TTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28238190 6 -  71996105 AG-TTTT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1780502 6 -   3067355 AG-TTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339165 6 - 171630274 CG-TTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            162035 6 -    375362 AG-TTTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      163823 6 -    373274 AG-TTTT
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1485577 6 -   2232465 TG-TTTT
i otoGar3.GL873742         C 0 I 33
e aotNan1.NW_018494050v1      109439 854 -    285216 I
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M

a score=197271.000000
s hg38.chr6_GL000254v2_alt     75062 32 +   4827813 AGCCAAAATTTGATGGAAGGGTCGATAAGAAA
s panTro5.chr6              29045643 32 + 175400573 AGCCAAAATTTGATGGAAGGGTCGATAAGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29289699 32 + 173848474 AGCCAAAATTTGATGGAAGGGTCGATAAGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5089723 32 +   6154872 AGCCAAAATTTGATGGAAGGATCGATAAGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110926 31 + 122973662 AGCCAAAATTTGTTGGGAGGGTCAATTAG-AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29271498 27 + 172585720 AGCCAAAATTTGATGGAAGGGTCGATA-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28920967 27 - 170955103 AGCCAAAATTTGATGGAAGGGTCGATA-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1898687 27 -   2996164 AGCCAAAATTTGATGGAAGGGTCGATA-----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1783897 32 -   2157725 AGCCAAAATTTGATGGAAGGGTCGATAAGAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28238196 32 -  71996105 AGCCAAAATTTGATGGAAGGGTCAATAAGAAA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1780508 32 -   3067355 AGCCAAAATTTGATGGAAGGGTCGATAAGAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339171 32 - 171630274 AGCGAAAATGTGATGGGAGCGTCAATAAGAAA
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            162041 32 -    375362 AGCCAAAATTAGGTGGGAGAGTCAATAAGAAA
i saiBol1.JH378348         C 0 I 1
s cebCap1.NW_016108108v1      163829 32 -    373274 AGCCAAAATTTGGTGGGAGGGTAAATAAGAAA
i cebCap1.NW_016108108v1   C 0 T 17558
e otoGar3.GL873742           1485583 33 -   2232465 I
e aotNan1.NW_018494050v1      109439 854 -    285216 I
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M

a score=26531.000000
s hg38.chr6_GL000254v2_alt     75094 9 +   4827813 TTGTTCTTG
s panTro5.chr6              29045675 9 + 175400573 TTGTTCTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29289731 9 + 173848474 TTGTTCTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5089755 9 +   6154872 TTGTTCTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110957 9 + 122973662 TATTTTTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29271525 3 + 172585720 ------TTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28920994 3 - 170955103 ------TTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1898714 3 -   2996164 ------TTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1783929 9 -   2157725 TTGTTTTTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28238228 9 -  71996105 TTGTTTTTA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1780540 9 -   3067355 TTGTTTTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339204 9 - 171630274 TGGTTTTTG
i calJac3.chr4             I 1 T 27479
s saiBol1.JH378348            162074 9 -    375362 TGGTTTTTG
i saiBol1.JH378348         I 1 C 0
e otoGar3.GL873742           1485583 33 -   2232465 I
e aotNan1.NW_018494050v1      109439 854 -    285216 I
e cebCap1.NW_016108108v1      163861 17558 -    373274 T
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M

a score=5005.000000
s hg38.chr6_GL000254v2_alt     75103 1 +   4827813 A
s panTro5.chr6              29045684 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29289740 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5089764 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110966 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29271528 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28920997 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1898717 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1783938 1 -   2157725 A
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28238237 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1780549 1 -   3067355 A
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            162083 0 -    375362 C
e otoGar3.GL873742           1485583 33 -   2232465 I
e aotNan1.NW_018494050v1      109439 854 -    285216 I
e cebCap1.NW_016108108v1      163861 17558 -    373274 T
e calJac3.chr4             171339213 27479 - 171630274 T
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M

a score=1032.000000
s hg38.chr6_GL000254v2_alt     75104 2 +   4827813 Ag
s panTro5.chr6              29045685 2 + 175400573 Ag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29289741 2 + 173848474 Ag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5089765 2 +   6154872 Ag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29271529 2 + 172585720 gg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28920998 2 - 170955103 gg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1898718 2 -   2996164 gg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1783939 2 -   2157725 gg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28238238 2 -  71996105 gg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1780550 1 -   3067355 G-
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            162083 0 -    375362 C
e otoGar3.GL873742           1485583 33 -   2232465 I
e aotNan1.NW_018494050v1      109439 854 -    285216 I
e cebCap1.NW_016108108v1      163861 17558 -    373274 T
e calJac3.chr4             171339213 27479 - 171630274 T
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M
e nomLeu3.chr1a             74110967 0 + 122973662 C

a score=173006.000000
s hg38.chr6_GL000254v2_alt     75106 44 +   4827813 ccaggagtggtggctcacgcctgtaatcccagcactttgggagg
s panTro5.chr6              29045687 44 + 175400573 ccaggagtggtggctcacgcctgtgatcccagcactttgggagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29289743 44 + 173848474 ccaggagtggtggctcacgcctgtgatcccagcactttgggagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5089767 44 +   6154872 ccaggagtggtggctcacgcctgtaatcccagcactttgggagg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29271531 44 + 172585720 ccgggcgtggtggctcacgcctgtaatcccagcactttgggagg
i rheMac8.chr4             C 0 I 692
s macFas5.chr4              28921000 41 - 170955103 ccgggcgtggtggctcacgcctgtaatcccagcacttgaga---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1898720 41 -   2996164 ccgggcgtggtggctcacgcctgtaatcccagcacttgaga---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1783941 44 -   2157725 ccgggcgtggtggctcactcctgtaatcccagcactttgggagg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28238240 44 -  71996105 ccgggcgtggtggctcatgcctgtaatcccagcactttgggagg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1780551 43 -   3067355 -Tgggcgtggtggctcacgcctgtaatacccgcactttgtgagg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171311734 44 - 171630274 cccggcgcgatggctcacacctgtattcccagcactttcacagc
i calJac3.chr4             T 27479 C 0
e saiBol1.JH378348            162083  0 -    375362 C
e otoGar3.GL873742           1485583 33 -   2232465 I
e aotNan1.NW_018494050v1      109439 854 -    285216 I
e cebCap1.NW_016108108v1      163861 17558 -    373274 T
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M
e nomLeu3.chr1a             74110967  0 + 122973662 C

a score=246098.000000
s hg38.chr6_GL000254v2_alt     75150 53 +   4827813 cagaggcgggtggatcacctgaggtcagaagttcgagaccagcctagtcaaca
s panTro5.chr6              29045731 53 + 175400573 ccgaggcaggtgaatcacctgaggtcagaagttcaagaccagcctagtcaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29289787 53 + 173848474 ccgaggcgggtgaatcacctgaggtcagaagttcaagaccagcctagtcaaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5089811 53 +   6154872 ccgaggcgggtggatcacctgaggtcagaagttcaagaccagcctagtcaaca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29272267 53 + 172585720 ccgaggcgggtagatcacctgaggtcagaagttcaagaccggcctggtcaaca
i rheMac8.chr4             I 692 C 0
s macFas5.chr4              28921041 53 - 170955103 ccgaggcgggtagatcacctgaggtcagaagttcaagaccggcctggtcaaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1898761 53 -   2996164 ccgaggcgggtagatcacctgaggtcagaagttcaagaccggcctggtcaaca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1783985 53 -   2157725 cagaggcgggtagatcacctgaggtcagcagttcaagactggcctggtcaaca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28238284 53 -  71996105 ccgaggcgggtagatcacctgaggtcagaagttcaagaccggcctggtcaaca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1780594 53 -   3067355 ccgaggcgggtagatcacctgaggtcagaagttcaagaccggcctggtcaaca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171311778 53 - 171630274 ctgaggagggtggatcgcctgaggtcgggagttcgagaccagcctggccatca
i calJac3.chr4             C 0 C 0
e saiBol1.JH378348            162083  0 -    375362 C
e otoGar3.GL873742           1485583 33 -   2232465 I
e aotNan1.NW_018494050v1      109439 854 -    285216 I
e cebCap1.NW_016108108v1      163861 17558 -    373274 T
e manLeu1.NW_012104165v1     1904725 1700 +   2316924 M
e nomLeu3.chr1a             74110967  0 + 122973662 C

a score=952177.000000
s hg38.chr6_GL000254v2_alt     75203 198 +   4827813 tggtgaaa-ccccgtctctactaaatgcac-ataaattagccaggcatggtggcgggcgcctataatcccagctactcaggaggctgaggcaggagaatcgcttgaacccgggaagcagaggttgcagtgacccgagatcgcaccactgcgctccagcctgggc-------aacaagagcgaaacttcgtttcCCCCCC-------AAAAAA---------TT
s panTro5.chr6              29045784 199 + 175400573 tggtgaaa-ccccgtctctactaaatgcac-ataaattagccaggcatggtggcgggcgcctataatcccagttactcaggaggctgaggcacgagaatcgcttgaacccgggaggcagaggttgcagtgacccgagatcgcaccactgcgctccagccttggc-------aacaagagcgaaacttcgttcccccccc-------aaaaaaa--------TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29289840 197 + 173848474 tggtgaaa-ccccgtctctactaaatgcac-ataaattagccaggcatggtggcgggcgcctataatcccagttactcaggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcagtgacccgagatcgcaccactgcgctccagcctgggc-------aacaagagcgaaacttcgtt--cccccc-------aaaaaaa--------TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5089864 207 +   6154872 tggtgaaacccccgtctctactaaatgcac-ataaattagccaggcatggtggcgggcgcctataatcccagctactcaggaggctgaggcaggagaatcacttgaacccgggaggctgaggttgcagtgacccgagatcgcaccactgcgctccagcctgggc-------aacaagagcgaaacttcgtTCCCCCCCCCCCCCCAAAAAAAA--------TT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29272320 200 + 172585720 tggtgaaa-ccctgtctctactaaatattc-aaaaattagccgggcgtggtggcaggcgcctataatcccagctactcagaaggctgaggcaggagaatcgcttgaacccgggaggcagagtttgcagtgacccgagattgtgccactgcgctccaacct-ggc-------aacaagagcgaagcttcgtt---ccaaa-------aaaaaaaaaaaa---aT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28921094 200 - 170955103 tggtgaaa-ccctgtctctactaaatattc-aaaaattagccgggcgtggtggcaggcgcctataatcccagctactcagaaggctgaggcaggagaatcccttgaacccgggaggcagagtttgcagtgacccgagattgtgccactgcgctccaacct-ggc-------aacaagagcgaagcttcgtt---ccaaa-------aaaaaaaaaaaa---TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1898814 203 -   2996164 tggtgaaa-ccctgtctctactaaatattc-aaaaattagccgggcgtggtggcaggcgcctataatcccagctactcagaaggctgaggcaggagaatcgcttgaacccgggaggcagagtttgcagtgacccgagatcgtgccactgcgctccaacct-ggc-------aacaagagggaagcttcgtt---ccaaa-------aaaaaaaaaaaaaaTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1784038 195 -   2157725 tggtgaaa-ccctgtctctactaaatattc-aaaaattagccggacgtggtggcaggcgcctgtaatcccagctactcagaaggctgaggcagtagaatcgcttgaacccgggaggcagagtttgcagtgacccgagatcgtgccactgcgctccaacct-ggc-------aacaagagcgaagcttcgtt---ccaaa-------aaaaaaa--------TT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28238337 194 -  71996105 tggtgaaa-ccctgtctctactaaatattc-aaaaattagccgggcgtggtggtaggtgcctgtaatcccagctactcagaaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcagtgacccgagatcgtgccactgcgctccaacct-ggc-------aacaagagagaaacttcgtt---cc-ca-------aaaaaaa--------TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1906428 195 +   2316924 tggtgaaa-ccctgtctctactaaatattc-aaaaattagccgggcgtggtggcaggcgcctgtaatcccagctactcagaaggctgaggcagtagaatcgcttgaacccgggaggcagagtttgcagtgacccgagatcgtgccactgcgctccaacct-ggc-------aacaagagcgaagcttcgtt---ccaaa-------aaaaaaa--------TT
i manLeu1.NW_012104165v1   M 1700 C 0
s colAng1.NW_012115566v1     1780647 196 -   3067355 cggtgaaa-ccctgtctctactaaatattc-aaaaattagccgggcgtggtggcaggcgcctgtaatcccagctactcagaaggctgaggcaggagaatcgtttgaacccgggaggcagaggttgcagtgacccaagatggtgccactgcgctccaacct-ggc-------aacaagagcgaaacttcgtt---ccaaa-------aataaaGA-------TT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171311831 200 - 171630274 tagtaaaa-tcacatctctactaaaattacaaaaaattagccgggcgtggtggcgggtgccctcaatcccagctacctgggagactgaggcaggagaatcgcttaaacctgggaggcggaggttgcagtgagcggagatcacggtatttcattccagcctgggcaacaagaaacaagagtgaaattctgtc---tcaaa-------aaaaG------------
i calJac3.chr4             C 0 I 27182
e saiBol1.JH378348            162083   0 -    375362 C
e otoGar3.GL873742           1485583  33 -   2232465 I
e aotNan1.NW_018494050v1      109439 854 -    285216 I
e cebCap1.NW_016108108v1      163861 17558 -    373274 T
e nomLeu3.chr1a             74110967   0 + 122973662 C

a score=71654.000000
s hg38.chr6_GL000254v2_alt     75401 16 +   4827813 GTTTCTGGATGATTAG
s panTro5.chr6              29045983 16 + 175400573 GTTTCTGGATGATTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29290037 16 + 173848474 GTTTCTGGATGATTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5090071 16 +   6154872 GTTTCTGGATAATTAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29272520 16 + 172585720 TTTTTTAGATGATTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28921294 16 - 170955103 TTTTTTAGATGATTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1899017 16 -   2996164 TTTTTTAGATGATTGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1784233 16 -   2157725 TTTTTTGGATGATTGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28238531 16 -  71996105 TTTTTTGGATGATTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1906623 16 +   2316924 TTTTTTGGATGATTGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1780843 16 -   3067355 GTTTCTGGATGATTGG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1485616 14 -   2232465 GTTTTTGGATGATT--
i otoGar3.GL873742         I 33 C 0
e saiBol1.JH378348            162083  0 -    375362 C
e aotNan1.NW_018494050v1      109439 854 -    285216 I
e cebCap1.NW_016108108v1      163861 17558 -    373274 T
e calJac3.chr4             171312031 27182 - 171630274 I
e nomLeu3.chr1a             74110967  0 + 122973662 C

a score=776820.000000
s hg38.chr6_GL000254v2_alt     75417 145 +   4827813 ATGATTTCCTAAAAATTAAATAAATAAAA-TT--TATAAAATTATGTTCGCTTTCAGTCTTTGTCTTGTCCTCCCGC---TTGTAAGGTCCGAGCCTTCTCAGACAGGAAACAACAT-----TCC-----TCTGGGTTTATCCCCTCCGCCTCACGTCTCT
s panTro5.chr6              29045999 145 + 175400573 ATGATTTCCtaaaaaataaataaataaaa-tt--tataaaATTATGTTCGCTTGCAGTCTTTGTTTTGTCCTCCCGC---TTGTAAGGTCCGAGCCTTCTCAGACAGGAAACAACAT-----TCC-----TCTGGGTTTATCCCCTCCGCCTCACGTCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29290053 145 + 173848474 ATGATTTCCtaaaaaataaataaataaaa-tt--tataaaATTATGTTCGCTTGCAGTCTTTGTTTTGTCCTCCCGC---TTGTAAGGTCCGAGCCTTCTCAGACAGGAAACAACAT-----TCC-----TCTGGGTTTATCCCCTCCGCCTCACGTCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5090087 145 +   6154872 ATGATTTCCtaaaaaataaataaataaaa-tt--tataaaATTAAGTTCGCTTGCAGTCTTTGTTTTGTCCTCCCGC---TTGTAAGGTCCGAGCCTTCTCAGACAGGAAACAACAT-----TCC-----TCTGGGTTTATCCCCTCCGCCTCACGTCTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110967 125 + 122973662 ATAATTTCCTCAAAA----------------------AAATTTAGATTCTCTTACAGGCTTTTTTTTCT-CTACCTC---TTGTAAGGCCCAAGCCTCCCCAGACAGGAAACAACAT-----TCC-----TCTAGGTTTATCCCCGCCTTCTGACGTCTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29272536 147 + 172585720 ATGATTTCCTAAAAAATAAATAAATAAAA-TTTTTAAAAAAGTATGTTCTCTTACACGCTTTGTTTTTTCCTCCCGC---GTGTAAGGTCCGAGTCTTCTCAGACAGGAAACAACAT-----TCC-----GCTAGGTTTATCCCTGCCGCCTCAGGTCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28921310 147 - 170955103 ATGATTTCCTAAAAAATAAATAAATAAAA-TTTTTAAAAAAGTATGTTCTCTTACACGCTTTGTTTTTTCCTCCCGC---GTGTAAGGTCCGAGTCTTCTCAGACAGGAAACAACAT-----TCC-----GCTAGGTTTATCCCTGCCGCCTCAGGTCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1899033 148 -   2996164 ATGATTTCCTAAAAAATAAATAAATAAAATTTTTTAAAAAAGTATGTTCTCTTACACGCTTTGTTTTTTCCTCCCGC---GTGTAAGGTCCGAGTCTTCTCAGACAGGAAACAACAT-----TCC-----GCTAGGTTTATCCCTGCCGCCTCAGGTCTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1784249 147 -   2157725 ATGATTTCCtaaaaaataaataaataaaa-tttaaaaatatataTGTTCTCTTACACGCTTTGTTTTTTCCTCCCGC---GTGTAAGGTCCGAGTCTTCTCAGACAGGAAACAACAT-----TCC-----GCTAGGTTTATCCCCGCCGCCTCAGGTCTCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28238547 147 -  71996105 ATTATTTCCtaaaacataaataaataaaa-tttaaaaaaaaataTGTTCTCTTACAGGCTTTGTTTTTTCCTCCCGC---GTGTAAGGTCCGAGTCTTCTCAGACAGGAAACAACGT-----TCC-----ACTAGGTTTATCCCTGCCGCCTCAGGTCTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1906639 147 +   2316924 ATGATTTCCTAAAAAATAAATAAATAAAA-TTTTAAAATATATATGTTCTCTTACACGCTTTGTTTTTTCCTCCCGC---GTGTAAGGTCCGAGTCTTCTCAGACAGGAAACAACAT-----TCC-----GCTAGGTTTATCCCCGCCGCCTCAGGTCTCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1780859 145 -   3067355 ATGATTTCCTaaaaaataaataaataaaa-tt--aaaaaaaaaaTGTTCTCTTACAGGCTTTGTTTTTTCCTCCCGC---GTGTAAGGTCCGAGTCTTCTCAGACAGGAAACAACAT-----TCC-----GCTATGTTTATCCCCGCCGCCTCAGGTCTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339213 120 - 171630274 ATAATTTCCT--------------------TT--AAAAAA------TTATCTCACAGACTTTTACTTTTTCTCCCCT---TTGTACGGTCCGAGCCTTCCCAGACAGGAAACAGAATCCGC-TGC-----TCTAGGATGATC----GCGCCTCGCGTGTCT
i calJac3.chr4             I 27182 C 0
s saiBol1.JH378348            162083 124 -    375362 ATAATTTCCT--------------------TT--TAAAAA------TTATATTACAGACCTTAATTTTTTTTTCTCCTGATTGTACCGTCCGATCATTCCCGGACAGGAAACAGCATCCCTGTAC-----TCTAGGTTTACC----GCGCTTCGCTTCTTT
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1485630 113 -   2232465 ------TCCT----------CCAGGAAAA-TTTTTAGA--------TTTTCTTACAATC-------------CCCAG---TTGCAATATCTGCACTTTCAGAGACAGGAAACAATAA-----TCCTCTATTCTAGGTTTTCCGCTA--GCCGCGCATCTCT
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      109439 854 -    285216 I
e cebCap1.NW_016108108v1      163861 17558 -    373274 T

a score=1461711.000000
s hg38.chr6_GL000254v2_alt     75562 188 +   4827813 -CCCCAGCTGGGCGCAGCCTCAGCCTATGCTGCAG-AAATGTTAAAAGTTG-AACATACA-GAGA--GG----AAAAAAAT---GGAACGTGATGCGGAAATTAAAACAGCAGCTACATATAAATCT-CA-ACACAGTGCTTAAAATGTGTGTAAATGGTTCTAGGACTGCGCTGCACTATTGTGAAAAGTTCATTCAGAAGT
s panTro5.chr6              29046144 188 + 175400573 -CCCCAGCTGGGCGCAACCTCAGCCTATGCTGCAG-AAATGTTAAAAGTTG-AACATACA-GAGA--GG----AAAAAAAT---GGAACGTGATGCGGAAATTAAAACAGCAGCTACATATAAATCT-CA-ACACAGTGCTTAAAATGTGTGTAAATGGTTCTAGGACTGCGCTGCACTATTGTGAAAAGTTCATTCAGAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29290198 188 + 173848474 -CCCCAGCTGGGCGCAGCCTCAGCCTATGCTGCAG-AAATGTTAAAAGTTG-AACATACA-GAGA--GG----AAAAAAAT---GGAACGTGATGCGGAAATTAAAACAGCAGCTACATATAAATCT-CA-ACACAGTGCTTAAAATGTGTGTAAATGGTTCTAGGACTGCGCTGCACTATTGTGAAAAGTTCATTCAGAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5090232 190 +   6154872 -CCCCAGCTGGGCGCAGCCTCAGCCTATGCTGCAG-AAATGTTAAAAGTTGAAACATACA-GAGA--GG---AAAAAAAAT---GGAACGTGATGCGGAAATTAAAACAGCAGCTACATATAAATCT-CA-ACACAGTGCTTAAAATGTGTGTAAATGGTTCTAGGACTGCGCTGCACTATTGTGAAAAGTTCATTCAGAAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111092 193 + 122973662 -CCCCAGATGGGCTCAGCCTCAGCCTATGTTGCAGAAAACGTTTGAAGTTG-AGCATACA-GAGA--AGGGAAAAAAAAAA---GGAAAGTGATGTGGAAATTAAAACAGTGGCTACATGTAAATCT-CA-GCACAGTGCTTAAAATGTATGTAAATGGTTCTAGGAGTGCACTGCACTATTGTGAAAAGTTCATTCAGAAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29272683 186 + 172585720 -TCCCAGCTAGGTTCAGCCTTAGCCCATGCTGCAG-AAATGTTTAAAGTTG-AACATATA-GAGA--GG----AAAATAGT---GGAAAGTGATGCGGAAATATAAACAGCAGCTACATATAAATCT-CA-AAAC--TGCTTAAAATATGTGTAAATGGTTCTAGGACTGCTCTGCACTATTGTGAAAAGTTCGTTCAGAAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28921457 186 - 170955103 -TCCCAGCTAGGTTCAGCCTTAGCCCATGCTGCAG-AAATGTTTAAAGTTG-AACATATA-GAGA--GG----AAAATAGT---GGAAAGTGATGCGGAAATATAAACAGCAGCTACATATAAATCT-CA-AAAC--TGCTTAAAATATGTGTAAATGGTTCTAGGACTGCTCTGCACTATTGTGAAAAGTTCGTTCAGAAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1899181 186 -   2996164 -TCCCAGCTAGGTTCAGCCTTAGCCCATGCTGCAG-AAATGTTTAAAGTTG-AACATATA-GAGA--GG----AAAATAGT---GGAAAGTGATGCGGAAATATAAACAGCAGCTACATATAAATCT-CA-AAAC--TGCTTAAAATATGTCTAAATGGTTCTAGGACTGCTCTGCACTATTGTGAAAACTTCGTTCAGAAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1784396 186 -   2157725 -TCTCAGCTGGGTTCAGCCTTAGCCCATGCTGCAG-AAATGTTTAAAGTTG-AACATATA-GAGA--GG----AAAATAAT---GGAAAGTGATGCGGAAATATAAACAGCAGCTACATATAAATCT-CA-ACGC--TGCTTAAAATATGTGTAAATGGTTCTAGGACTGCTCTGCACTATTGTGAAAAGTTCGTTCAGAAGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28238694 186 -  71996105 -TCCCAGCTGGGTTCAGCCTTAGCCTATGCTGCAG-AAATGTTTAAAGTTG-AACATATA-GAGA--GG----GAAATAAT---GGAAAGTGATGTGGAAATTTAAACAGCAACTACATATAAATCT-CA-ACAC--TGCTTAAAATATGTGTAAACGGTTCTAGGACTGCTCTGCACTGTTGTGAAAAGTTCATTCAGAAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1906786 186 +   2316924 -TCTCAGCTGGGTTCAGCCTTAGCCCATGCTGCAG-AAATGTTTAAAGTTG-AACATATA-GAGA--GG----AAAATAAT---GGAAAGTGATGCGGAAATATAAACAGCAGCTACATATAAATCT-CA-ACGC--TGCTTAAAATATGTGTAAATGGTTCTAGGACTGCTCTGCACTATTGTGAAAAGTTCGTTCAGAAGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1781004 186 -   3067355 -TCCCAGCTGGGTTCAGCCTTAGCCTATGCTGCAG-AAATGTTTAAAGTTG-AACATATA-GAGA--GG----AAAATAAT---GGAAAGTGATGCGGAAATTTAAACAGCAGCTACATATAAATCT-CA-ACAC--TGCTTAAAATGTGTGTAAATGGTTCTAGGACTGCTCTGCACTGTTGTGAAAAGTTCATTCAGAAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339333 185 - 171630274 -CCCCCGCTGCGCGCAGCCTCAGCCTCAGCTGCAG-AAAGGCTTGAAGCTG-AGCTCATA-GAGAAAGG----AGAGAAAC---GGAAAGCGATGTGGGGATTAAAAGAGCAGCTGCATGTGAACCT-CACACGG--TGCTTACAGTGCGTGCGAACGGCCCTGGGAG---GCTGCGCTCTAGTGAAAAGTTCA-TCAGGAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            162207 189 -    375362 -TTCTAGTTGGGCGCAGCCTCAGCCTCTGCTG-AG-AAATGCTTGAAGTTG-AGCACGTA-GAGAAAGA----AAAGAAAC-AAGGAAAGTGATGTGGAAATTAAAACAGCAGCTGCATGTGAATGTCCACACAG--CGCTTGCAATGCGTGTGAATGGTTCTGGGAG--CGCCGCGCTCTTGTGAAAAGTTCATTCAGAAGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      146303 191 -    373274 -CCCCAGCTGGGCGCAGCCTCAGCCTCTGCTGCAG-AAATGCTTAAAGCTG-AACCCACG-GAGAACAG----AGAGAGAGAAAAGAAAGTGATGTGGAAATTAAAATAGCAGCTACATACAAATCT-CA-ACAG--TGTTTAAAATGTGCGTAAATGGGTCTAGGAGCGCGCTGCAATCCTGTGAAAAGTTCATTCAGAAGT
i cebCap1.NW_016108108v1   T 17558 I 434
s otoGar3.GL873742           1485743 191 -   2232465 TCCTCAACTGGACCCAGCCTCAGCTTATGCTGCGA-CAATGCT--GAGTTG-AGTACACAGGAGA--GG-GAAAAAAAATT---AGAAACCGATGCGGAAATTAAAATAGTCAATACAAATGAATCT-CA-AAATAGTGCTTAAAGTATGCGTAAACGGGACTAGTAGTGCGCGGAACTACCGCTGAAACTTCATTCAGGAGT
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      109439 854 -    285216 I

a score=1529337.000000
s hg38.chr6_GL000254v2_alt     75750 218 +   4827813 AAATGGGAGGGAAGGTGGAGAGGAGCTGAG---CGCCAGCTGGCGGAGAGAGGGAAAAGGAGGGGTGCCGTGAAGTGGAGGAAGAAAAACAC-AAATGGGAGAGAGATAGAGGGCA--AGGAAAAGCATCCTTAAGATGATTCGGACTTGGATGGACGGGACCGTAGAGTGAATCTAAGCGCCACATCTCTCCGTCGCTTCCTCTGGCCGTGAGGGAAGAGAGG
s panTro5.chr6              29046332 218 + 175400573 AAATGGGAGGGAAGGTGGAGAGGAGCTGAG---CGCCAGCTGGCGGAGAGAGGGAAAAGGAGGGGTGCCGTGAAGTGGAGGAAGAAAAACAC-AAATGGGAGAGAGATAGAGGGCA--AGGAAAAGCATCCTTAAGATGATTCGGACTTGGATGGACGGGACCGTAGAGTGAATCTAAGCGCCACATCTCTCCGTCGCTTCCTCTGGCCGTGAGGGAAGAGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29290386 218 + 173848474 AAATGGGAGGGAAGGTGGAGAGGAGCTGAG---CGCCAGCTGGCGGAGAGAGGGAAAAGGAGGGGTGCCGTGAAGTGGAGGAAGAAAAACAC-AAATGGGAGAGAGATAGAGGGCA--AGGAAAAGCATCCTTAAGATGATTCGGACTTGGATGGACGGGACCGTAGAGTGAATCTAAGCGCCACATCTCTCCGTCGCTTCCTCTGGCCGTGAGGGAAGAGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5090422 218 +   6154872 AAATGGGAGGGAAGGTGGAGAGGAGCTGAG---CGCCAGCTGGCGGAGAGAGGGAAAAGGAGGGGTGCCGTGAAGTGGAGGAAGAAAAACAC-AAATGGGAGAGAAATAGAGGGCA--AGGAAAAGCATCCTTAAGATGATTCGGACTTGGATGGACGGGACCGTAGAGTGAATCTAAGAGCCACATCTCTCCGTCGCTTCCTCTGGCCGTGAGGGAAGAGAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111285 212 + 122973662 AAACGGGAGGGAAGGTggagaggagccgag---cgccagctggcggagagagggaagaggcgcggtgcggTGAAGTGGAG------AAACACAAAAAGGGAGAGGGGTAGAGGGCA--AGGAAAAGCATCCTCAAGATTATTAGGACTTGGATGGACGGGATGGTAGAGTGAGTCTAAGCA-CGCATCTCTCCGTCGCTTCGTCTGGATATGAGGGAAGAGAGG
i nomLeu3.chr1a            C 0 I 8
s rheMac8.chr4              29272869 218 + 172585720 AAAGGGTAGGGAAGGTGAAGAGGAGCCGAG---CGCCAAATGGCGGAGAGAGGGAAAAGGTGGGGTGCCGTGAAGTGGAGGAAGAAAAACAC-AAAAGGGAGAGAGATAGAAGGCA--AGGAAAAACATCCTTAAGATGGTTCGGATTTGGATGGACGGGATCGTAGAGTGAATCTAAGCGCCACATTTCTCCGTCGCTTCCTCTGGCCGTGAGGGAAGGGAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28921643 218 - 170955103 AAAGGGTAGGGAAGGTGAAGAGGAGCCGAG---CGCCAAATGGCGGAGAGAGGGAAAAGGTGGGGTGCCGTGAAGTGGAGGAAGAAAAACAC-AAAAGGGAGAGAGATAGAAGGCA--AGGAAAAACATCCTTAAGATGGTTCGGATTTGGATGGACGGGATCGTAGAGTGAATCTAAGCGCCACATTTCTCCGTCGCTTCCTCTGGCCGTGAGGGAAGGGAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1899367 218 -   2996164 AAAGGGTAGGGAAGGTGAAGAGGAGCCGAG---CGCCAAATGGCGGAGAGAGGGAAAAGGTGGGGTGCCGTGAAGTGGAGGAAGAAAAACAC-AAAAGGGAGAGAGATAGAAGGCA--AGGAAAAACATCCTTAAGATGGTTCGGATTCGGATGGACGGGATCGTAGAGTGAATCTAAGCGCCACATTTCTCCGTCGCTTCCTCTGGCCGTGAGGGAAGGGAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1784582 218 -   2157725 AAAGGGTAGGGAGGGTGAAGAGGAGCCGAG---CGCCAAACGGCGGAGAGAGGGAAAAGGTGGGGTGCTGTGAAGTGGAGGAAGAAAAACAC-GAAAGGGAGAGAGAGAGAAGGCA--AGGAAAAACATCCTTAAGATGGTTCGGATTTGGATGGACGGGATCGTAGAGTGAATCTAAGCGCCACATTTCTCCGTCGCTTCCTCTGGCCGTGAGGGAAGGGAGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28238880 218 -  71996105 AAACGGTAGGGAAGGTGAAGAGGAGCCGAG---CGCCAACTGGCGGAGAGAGGGAAAAGGCGGGGTGCCGTGAAGTGGAGGAAGAAAAACAC-AAAAGGGAGAGAGATTGAAGGCA--AGGAAAAACATCCTTAAGATGGTTCGGATTTGGATGGACGGGATCGTAGAGTGAATCTAAGCGCCACATCTTTCCGTCGCTTCCTCTGGCCATGAGGGAAGAGAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1906972 218 +   2316924 AAAGGGTAGGGAGGGTGAAGAGGAGCCGAG---CGCCAAACGGCGGAGAGAGGGAAAAGGTGGGGTGCTGTGAAGTGGAGGAAGAAAAACAC-GAAAGGGAGAGAGAGAGAAGGCA--AGGAAAAACATCTTTAAGATGGTTCGGATTTGGATGGACGGGATCGTAGAGTGAATCTAAGCGCCACATTTCTCCGTCGCTTCCTCTGGCCGTGAGGGAAGGGAGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1781190 218 -   3067355 AAACGGTAGGGAAGGTGAAGAGGAGCCGAG---CGCCAACTGGCGGAGAGAGGGAAAAGGCGGGGTGCCGTGTAGTGGAGGAAGAAAAACAC-AAAAGGGAGAGAGATAGAAGACA--AGGAAAAACATCCTTAAGATGGTTCGGATTTGGGTGGACGGGATTGTAGAGTTAATCTAAGCGCCACATCTCTCCGTCCCTTCCTCTGGCCATGAGGGAAGAGAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339518 208 - 171630274 AAACGGGGCGGACGGTGGAGACCAGCCCGG---AGCCCGCT-GCGGGGAGA--GAAGGGGCG-GGTGCGGGGAAGTGGAGGAAGAAAAAC---AAAAGGGAGGGGTGG--AGGGC---AGGAAAAGCGTCCTCAAGGTGGTTCGGACTCGGCCGGACGGGATGGCAGCGCGAGTGTGAGCGCCGCGTGTCGCCGTCGCTTC-TCTGGACGGGAGGGAAGAGACG
i calJac3.chr4             C 0 I 8
s saiBol1.JH378348            162396 208 -    375362 AAACGGGAGGGAAGGCGGAGACCAGCCGAG---CGCCTGCC-GCGGGGAGA-GGAAGAGGCG-GGCGCGGGGAAGCGGAGGAAGAAAAAC---AAAAGGGAGAGGGGGCCCGGGC----GGGAAAGCGTCCTCACGGTGATTCGGCCTCGGCTGCACCGGACCGCGGAGCGAGTCTAAGCGC--CCTGTTTCCGCCGCTTC-TCTGGACAGGAGGGAAGAGAGG
i saiBol1.JH378348         C 0 I 8
s otoGar3.GL873742           1485934 211 -   2232465 -----------AAGACGCAGAGAAGAGGAGGGTCACCAGCTGGTGAGGAGAGACAAAAGGCGGCATGGGGTGAAGAAGAAAAAGAAGAGGAG-AAAAGGAAGTGAGG-AGAAGGCGGCAAGGGAAGCATCCTCATAATCATTAGGATTTGGATGGATCAGGGAGTGGAGTGAGTCTAAGTGCCACGTCTCTCCGTGGTTTCCTCCGGATAGATGGGAGGAGATA
i otoGar3.GL873742         C 0 I 8
e aotNan1.NW_018494050v1      109439 854 -    285216 I
e cebCap1.NW_016108108v1      146494 434 -    373274 I

a score=1731710.000000
s hg38.chr6_GL000254v2_alt     75968 231 +   4827813 TGTCCCTAGGGAGGTAGGCTGGACCAGGAAGGAGACCTGGTTCGTTTCGCCCA-GGCTGTCACGGCTTCAAGAGCGCCTCTCCGCTATTTCCGTCGCTCGA-CAGACGGGCTGAGCTCTTTGG-------A--------GTGATGTTGGGTTTTGGTTTGCGCCTC-AGGAACCGCTGATACC-GTAGCTTCTGAGGGAGCTTCAGGGATTGCCTGGCTTCCTA------AGTGC-CCGTGTTGAGAGTTAGAAGCG
s panTro5.chr6              29046550 231 + 175400573 TGTCCCTAGGGAGGTAGGCTGGACCAGGAAGGAGACCTGGTTCGTTTCGCCCA-GGCTGTCACGGCTTCAAGAGCGCCTCTCCGCTATTTCCGTCGCTCGA-CAGACGGACTGAGCTCTTTGG-------A--------GTGATGTTGGGTTTTGGTTTGCGCCTC-AGGAACCGCTGATACC-GTAGCTTCTTAGGGAGTTTCAGGGATTTCCTGGCTTCCTA------AGTGC-CTGTGTTGAGAGTTAGAAGCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29290604 231 + 173848474 TGTCCCTAGGGAGGTAGGCTGGACCAGGAAGGAGACCTGGTTCGTTTCGCCCA-GGCTGTCACGGCTTCAAGAGCGCCTCTCCGCTATTTCCGTCGCTCGA-CAGACGGACTGAGCTCTTTGG-------A--------GTGATGTTGGGTTTTGGTTTGCGCCTC-AGGAACCGCTGATACC-GTAGCTTCTGAGGGAGTTTCAGGGATTTCCTGGCTTCCTA------AGTGC-CTGTGTTGAGAGTTAGAAGCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5090640 232 +   6154872 TGTCCCTAGGGAGGTAGGCTGGACCAGGAAGGAGACCTGGTTCGTTTCGCCCAGGGCTGTCACGGCTTCAAGAGGGCCTCTCCGCTGTTTCCGTCGCTCGA-CAGACGGGCTGAGCTCTTTGG-------A--------GTGATGTTGGGTTTTGGTTTGCGCCTC-AGGAACCGCTGATACC-GTAGCTTCTGAGGGAGCTTCAGGGATTTCCTGGCTTCCTA------AGTGC-CTGTGTTGAGAGTTAGAAGCG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111505 230 + 122973662 TGTCCCCAGGGAGGTAGGCTCGACCAGGAAGGAGACCTGGTTCGGTTCGTTCA-GACTGCCACGGCTTCGAGAGCGCCTCGCCGCTCTTTCCGTCGCTCGA-TAGATAAGCTGGGCTCTGTGG-------GGGGAGCACGTGATGTTGCGATTTTGTTTGCGGGTCTGGGAACCAATGATAAT-GTAGCTTCTGAGGCAGCTGAAGGGATTTCCTG--------------CGTGC-CTGTGTT--GAGTTAGAAGCG
i nomLeu3.chr1a            I 8 C 0
s rheMac8.chr4              29273087 231 + 172585720 TGTCCCTAGGGAGGTAGGCTCGACCAGGAAGGAAACCTGGTTCGTTTTGCCCA-GGCTGTCACGGCTTCACGAGCGCCTCTCCGCTATTTCCGTCGCTCAA-CAGACCGGCTGAGCTCTTTGG-------A--------GTGATGTTGGGTTTTGGTTTGCGCTTC-AGGAACCGCTGATACT-GTAGCTTCTGAGGGAGTTGCAGGGATTTCCCGACTTCCTG------AGTGC-CTGTGTTGAGAGTTAGAAGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28921861 231 - 170955103 TGTCCCTAGGGAGGTAGGCTCGACCAGGAAGGAAACCTGGTTCGTTTTGCCCA-GGCTGTCACGGCTTCACGAGCGCCTCTCCGCTATTTCCGTCGCTCAA-CAGACCGGCTGAGCTCTTTGG-------A--------GTGATGTTGGGTTTTGGTTTGCGCTTC-AGGAACCGCTGATACT-GTAGCTTCTGAGGGAGTTGCAGGGATTTCCCGACTTCCTG------AGTGC-CTGTGTTGAGAGTTAGAAGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1899585 231 -   2996164 TGTCCCTAGGGAGGTAGGCTTGACCAGGAAGGAAACCTGGTTCGTTTTGCCCA-GGCTGTCACGGCTTCACGAGCGCCTCTCCGCTATTTCCGTCGCTCAA-CAGATCGGCTGAGCTCTTTGG-------A--------GTGATGTTGGGTTTTGGTTTGCGCTTC-AGGAACCGCTGATACT-GTAGCTTCTGAGGGAGTTGCAGGGATTTCCCGACTTCCTG------AGTGC-CTGTGTTGAGAGTTAGAAGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1784800 238 -   2157725 TGTCCCTAGGGAGGTTGGCTCGACCAGGAAGGAAACCTGGTTAGTTTTGCCCA-GGCTGTCACGGCTTCACGAGCGCCTCTCCGCTATTTCCGTCGCTCAA-CAGACCGGCTGAGCTCTTTGGAGGAGCAA--------GGGATGTTGGATTTTGGTTTGCGCTTC-AGGAACCGCTGATACT-GTAGCTTCTGAGGGAGTTGCAGGGATTTCCCGACTTCCTG------AGTGC-CTGTGTTGAGAGTTAGAAGTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28239098 230 -  71996105 TGTCCCTAGGGAGGTAGGCTCGACCAGGAAGGAAACCTGGTTCGTTTTGCCCA-GGCCGT-ACCCCTTCACGAGCGCCTCTCCGTTATTTCCGTCGTTCAA-CAGACCGGCTGAGCTCTTTGG-------A--------GTGATGCTGGGTTTTGGTTTGCGCTTC-AAGAACCGCTGATACC-GTAGCTTCTGAGGGAGTTGCAGGGATTTCCCGACTTCCTG------AGTGC-CTGTGTTGAGAATTAGAAGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1907190 231 +   2316924 TGTCCCTAGGGAGGTTGGCTCGACCAGGAAGGAAACCTGGTTAGTTTTGCCCA-GGCTGTCACGGCTTCACGAGCGCCTCTCCGCTATTTCCGTCGCTCAA-CAGACCGGCTGAGCTCTTTGG-------A--------GTGATGTTGGCTTTTGGTTTGCGCTTC-AGGAACCGCTGGTACT-GTAGCTTCTGAGGGAGTTGCAGGGATTTCCCGACTTCCTG------AGTGC-CTGTGTTGAGAGTTAGAAGTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1781408 231 -   3067355 TGTCCCTAGGGAGGTAGGCTCTACCAGGAAGGAAACCTGGTTCGTTTTGCCCA-GGCTGTCACGGCTTCACGAGCGCCTCTCCGCTATTTCCGTCGCTCAA-CAGACCGGCTGAGCTCTTTGG-------A--------GTGATGTTGGGTTTTGGTTTGCGCTTC-AGGAACCGCTGATACT-GTAGCTTCTGAGAGAGTTGCAGGGATTTCCTGACTTCCTG------AGTGC-CTGTGTTGAGAGTTAGAAGTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339734 224 - 171630274 TGTCCCTAGGGAGGCG-GCTCGGCCCGGAAGG-GGCCTGGTTCGCTTGGCGCC-GGCTGTCAGGGCTTCGGGACCGCCT---CGCGCTTTCCGCGGCT----------------GCACTTTGG-------G-GACGCCCGTGATGTGGGGTTTTTATTTTCGGTCC-GGGAACCGGCGATCCT-GGAGCTTCTGAGGGAGCCGCTGGgatttcccgatttcccgatttcccgCGTGCCGCGTGGAGCGTTAGCCGC-
i calJac3.chr4             I 8 C 0
s saiBol1.JH378348            162612 234 -    375362 CGTCCCTAGGGAGGTA-GCGCGGCCGGGAAGG-GGCCTGGTTGGTTTCGCGCG-GGCTGTCAGGGCTTCGAGGCCGCCTGG-CGCTCTTTCCGTGGCTCCA-CACACCGGCTGGGCTCTTTGG-------G-GACGCGCGTGATGTTGGGTTTTTATTTTCGGTCC-AGGAAGCGCTGATACG-GGAGCTTCTGGGGGAGCCGCAGGGATTTCCCGATTTCCCG------CGTGT-CCGCGTGGAGAGTTAGCCGC-
i saiBol1.JH378348         I 8 C 0
s cebCap1.NW_016108108v1      146928 234 -    373274 TGTCCCTAGGGAGGTA-GCTCGGCCGGGAAGG-GGCCTGGTTCGTTTCGCGCA-GGCTGTCACGCCTTCGAGGCCGCCTCG-CGCTCTTGCCGTGGCTCCA-CACACCGGCTGGGCTCTTTGG-------G-GACTCACGTGATGTTGCGTTTTTGTTTGCGGCTC-AGGAACCGCTGATACT-GGAGCTTCTGAGGGAGCCGCAGGGATTTCCCGATTTCCCG------AGTGC-CCATGTGGAGAGTTAGCCGC-
i cebCap1.NW_016108108v1   I 434 C 0
s otoGar3.GL873742           1486153 220 -   2232465 TGCCCCTGGCGAGGTGAGATTGACCAGGAAAAGGGTCGGATTACTTTCTCCCCTGGCTGTAGCAGATTCAAGAGCTCCTCGCCGCTCTTTCTGTCTCTGGATTAGACAGGCTGAGTACGTTGA-------T------------------GTTTTTGTTTGTGGTTC-AGGAAGCGCTGGTATTGGTAGCTCCGGAGCTAGCCACAGCCCGTTCCGGGT---CCG------CGTGC-GGGTGATGAAAGTGGAAGCC-
i otoGar3.GL873742         I 8 C 0
e aotNan1.NW_018494050v1      109439 854 -    285216 I

a score=133664.000000
s hg38.chr6_GL000254v2_alt     76199 12 +   4827813 GGATCTGCCGGC
s panTro5.chr6              29046781 12 + 175400573 GGATCTGCCGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29290835 12 + 173848474 GGATCTGCCGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5090872 12 +   6154872 GGATCTGCCGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111735 12 + 122973662 GAATCTGTCGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29273318 12 + 172585720 GGATCTGCCGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28922092 12 - 170955103 GGATCTGCCGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1899816 12 -   2996164 GGATCTGCCGGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1785038 12 -   2157725 GGATCTGCCAGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28239328 12 -  71996105 GGATCTACCGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1907421 12 +   2316924 GGAGCTGCCGGC
i manLeu1.NW_012104165v1   C 0 I 8
s colAng1.NW_012115566v1     1781639 12 -   3067355 GGATCTGCCGAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339958 12 - 171630274 GGATCTGCCCGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            162846 12 -    375362 GGATCCGCCGGC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      147162 12 -    373274 GGATCTGCCGGC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      110293 12 -    285216 GGATCTGCCGGC
i aotNan1.NW_018494050v1   I 854 C 0
s otoGar3.GL873742           1486373 12 -   2232465 GGATCTACCCGC
i otoGar3.GL873742         C 0 C 0

a score=9090.000000
s hg38.chr6_GL000254v2_alt     76211 1 +   4827813 A
s panTro5.chr6              29046793 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29290847 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5090884 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111747 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29273330 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28922104 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1899828 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1785050 1 -   2157725 A
i cerAty1.NW_012001495v1   C 0 I 8
s chlSab2.chr17             28239340 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1781651 1 -   3067355 A
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339970 1 - 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            162858 1 -    375362 A
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      147174 1 -    373274 A
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      110305 1 -    285216 G
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486385 1 -   2232465 A
i otoGar3.GL873742         C 0 C 0
e manLeu1.NW_012104165v1     1907433 8 +   2316924 I

a score=25892.000000
s hg38.chr6_GL000254v2_alt     76212 13 +   4827813 GCTAAGAGACTGA
s panTro5.chr6              29046794 13 + 175400573 GCTAAGAGACTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29290848 13 + 173848474 GCTAAGAGACTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5090885 13 +   6154872 GCTAAGAGACTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111748 13 + 122973662 GCTTCGAGACTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29273331  4 + 172585720 GCTT---------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28922105  4 - 170955103 GCTT---------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1899829  4 -   2996164 GCTT---------
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28239341  4 -  71996105 GCTT---------
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1781652  4 -   3067355 GCTT---------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339971 13 - 171630274 GCTTCGAGACTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            162859 13 -    375362 GCTTCGAGACTGA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      147175 13 -    373274 GCTTCGAGGCTGA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      110306 13 -    285216 GCTTCGAGACTGA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486386 13 -   2232465 GCTTTAAGGTTGA
i otoGar3.GL873742         C 0 C 0
e manLeu1.NW_012104165v1     1907433  8 +   2316924 I
e cerAty1.NW_012001495v1     1785051  8 -   2157725 I

a score=12000.000000
s hg38.chr6_GL000254v2_alt     76225 1 +   4827813 G
s panTro5.chr6              29046807 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29290861 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5090898 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111761 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29273335 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28922109 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1899833 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28239345 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1907441 1 +   2316924 G
i manLeu1.NW_012104165v1   I 8 C 0
s colAng1.NW_012115566v1     1781656 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339984 1 - 171630274 G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            162872 1 -    375362 G
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      147188 1 -    373274 G
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      110319 1 -    285216 G
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486399 1 -   2232465 G
i otoGar3.GL873742         C 0 C 0
e cerAty1.NW_012001495v1     1785051 8 -   2157725 I

a score=568370.000000
s hg38.chr6_GL000254v2_alt     76226 58 +   4827813 CATGACGGCGGAAACATCTAATTT---TATTAGTTTTTGCTTAAAATGCA----AAAGATGAGAA
s panTro5.chr6              29046808 58 + 175400573 CATGACGGTGGAAACATCTAATTT---TATTAGTTTTTGCTTAAAATGCA----AAAGATGAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29290862 58 + 173848474 CATGACGGTGGAAACATCTAATTT---TATTAGTTTTTGCTTAAAATGCA----AAAGATGAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5090899 58 +   6154872 CATGACGGTGGAAACATCTAATTT---TATTAGTTTTTGCTTAAAATGCA----AAAGATGAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111762 58 + 122973662 CACGACAGTGGAAACGTCTAATTT---TATTAGGCTGTGCTTGAAATGCA----AAAGATGAGAA
i nomLeu3.chr1a            C 0 I 2
s rheMac8.chr4              29273336 58 + 172585720 CATGACAGTGGAAACACCTAATTT---TACTAGTTTTTGCTTGAAATGCA----AAAGATGAGAA
i rheMac8.chr4             C 0 I 2
s macFas5.chr4              28922110 58 - 170955103 CATGACAGTGGAAACACCTAATTT---TACTAGTTTTTGCTTGAAATGCA----AAAGATGAGAA
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1     1899834 58 -   2996164 CATGACAGTGGAAACACCTAATTT---TACTAGTTTTTGCTTGAAATGCA----AAAGATGAGAA
i macNem1.NW_012011356v1   C 0 I 2
s cerAty1.NW_012001495v1     1785059 58 -   2157725 CATGACAGTGGAAACACCTAATTT---TACTAGTTTTTGCTTGAAATGCA----AAAGATGAGAA
i cerAty1.NW_012001495v1   I 8 I 2
s chlSab2.chr17             28239346 58 -  71996105 CATGACAGTGGAAACATCTAATTT---TATTAGTTTTTGCTTGAAATGCA----AAAGATGAGAA
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012104165v1     1907442 58 +   2316924 CATGACAGTGGAAACACCTAATTT---TACTAGTTTTTGCTTGAAATGCA----AAAGATGAGAA
i manLeu1.NW_012104165v1   C 0 I 2
s colAng1.NW_012115566v1     1781657 58 -   3067355 CATGACAGTGGAAACATCTAATTT---TATTAGTTTTTGCTTGAAATGCA----AAAGATGAGAA
i colAng1.NW_012115566v1   C 0 I 2
s calJac3.chr4             171339985 58 - 171630274 CGTGGCCGTGGAAACGCTTCATTG---TATTAGCTTTAGCTCCAAATGCA----AACGGTGGGAA
i calJac3.chr4             C 0 I 2
s saiBol1.JH378348            162873 58 -    375362 CGCGACCGTGGAAACGTCTAATTG---TATTAGCTTTTGCTTGAAATGCA----AACGGTGAGAA
i saiBol1.JH378348         C 0 I 2
s cebCap1.NW_016108108v1      147189 61 -    373274 CGTGACCGTGGAAACGTCTATTTGTAATATTAGCTTTTGCTTGAAATGCA----AACGATGAGAA
i cebCap1.NW_016108108v1   C 0 I 1271
s aotNan1.NW_018494050v1      110320 58 -    285216 CGTGACCGTGGAAACGTCTAATCG---TATTAGCTTTTGCTCGAGATGCA----CACGATGAGAA
i aotNan1.NW_018494050v1   C 0 I 2
s otoGar3.GL873742           1486400 61 -   2232465 AACTACGATGGAAA-ATCTAATTT---TACCAGGTTTTGCTTGAAATACAAAACAAAAATGAGAA
i otoGar3.GL873742         C 0 C 0

a score=127518.000000
s hg38.chr6_GL000254v2_alt     76284 15 +   4827813 --AAAGTTACCGTTTCT
s panTro5.chr6              29046866 15 + 175400573 --AAAGTTCCCGTTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29290920 15 + 173848474 --AAAGTTCCCGTTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5090957 15 +   6154872 --AAAGTTCCCGTTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111822 15 + 122973662 --AAAGTTCTTGTTTGT
i nomLeu3.chr1a            I 2 C 0
s rheMac8.chr4              29273396 15 + 172585720 --AAAGTTTCCGTTTGT
i rheMac8.chr4             I 2 C 0
s macFas5.chr4              28922170 15 - 170955103 --AAAGTTTCCGTTTGT
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1     1899894 15 -   2996164 --AAAGTTTCCGTTTGT
i macNem1.NW_012011356v1   I 2 C 0
s cerAty1.NW_012001495v1     1785119 15 -   2157725 --AAAGTTTCCGTTTGT
i cerAty1.NW_012001495v1   I 2 C 0
s chlSab2.chr17             28239406 15 -  71996105 --AAAGTTTCCGTTTGT
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012104165v1     1907502 15 +   2316924 --AAAGTTTCCGTTTGT
i manLeu1.NW_012104165v1   I 2 C 0
s colAng1.NW_012115566v1     1781717 15 -   3067355 --AAAGTTTCCGTTTGT
i colAng1.NW_012115566v1   I 2 C 0
s calJac3.chr4             171340045 15 - 171630274 --AAAGTTCCCGTTTGT
i calJac3.chr4             I 2 C 0
s saiBol1.JH378348            162933 14 -    375362 --AACGTTCCCG-TCGC
i saiBol1.JH378348         I 2 C 0
s aotNan1.NW_018494050v1      110380 15 -    285216 --AAAGTTCCCGTTTGT
i aotNan1.NW_018494050v1   I 2 C 0
s otoGar3.GL873742           1486461 17 -   2232465 AGAAAGTTTCTGTTTGT
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      147250 1271 -    373274 I

a score=877699.000000
s hg38.chr6_GL000254v2_alt     76299 95 +   4827813 TTGCTCCATATATATC----TCCTAGAATA---AAGCCAATCGAAAGCCAACTTCACCCTAAAGAAACTCTTCCTGGCGTTTGCAACGAGCTCCTTTACTCC
s panTro5.chr6              29046881 95 + 175400573 TTGCTCCATATATATC----TCCTAGAATA---AAGCCAATCGAAAGCTAACTTCACCCTAAAGAAACTCTTCCTGGCGTTTGCAACGAGCTCCTTTACTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29290935 95 + 173848474 TTGCTCCATATATATC----TCCTAGAATA---AAGCCAATCGAAAGCCAACTTCACCCTAAAGAAACTCTTCCTGGCGTTTGCAACGAGCTCCTTTACTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5090972 95 +   6154872 TTGCTCCATATATATC----TCCTAGAATA---AAGCCAATCGAAAGCCAACTTCACCCTAAAGAAACTCTTCCTGGCGTTTGCAACGAGCTCCTTTACTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111837 95 + 122973662 TTGCTCCACATATTTC----CTTTAGAATG---AAGCCGATTGAAAGTCAGCTTCACCCTGAAGAAACTCCTCCTGGTGTTTGCAATGAGCTTCTTTACTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29273411 95 + 172585720 TTGTTCCACATATATC----TCCTAGAATA---AAGCCAATAGAAAGCCAACTTCACCCTAAAGAAACTCTTCCTGGCGTTTGCAACGAGCTCCTTTACTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28922185 92 - 170955103 TTGTTCCACATATATC----TCCTAGAATA---AAGCCAATAGAAAGCCAACTTCACCCTAAAGAAACTCTTCCTGGCGTTTG---CGAGCTCCTTTACTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1899909 95 -   2996164 TTGTTCCACATATATC----TCCTAGAATA---AAGCCAATAGAAAGCCAACTTCACCCTAAAGAAACTCTTCCTGGCGTTTGCAACGAGCTCCTTTACTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1785134 95 -   2157725 TTATTCCACATGTATC----TCCTAGAATA---AAGCCAATCGAAAGCCAATTTCACCCTAAAGAAACTCTTCTTGGCGTTTGCAACGAGCTCCTTTACTCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28239421 95 -  71996105 TTGCTCCACATATATC----TCCTAGAATA---AAGCCAATCGAAAGCCAACTTCACCCTAAAGAAACTCTTCCTGGAGTTTGCAACGAGCTCCTTTACTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1907517 95 +   2316924 TTGTTCCACATGTATC----TCCTAAAATA---AAGCCAATCGAAAGCCAACTTCACCCTAAAGAAACTCTTCCTGGCGTTTGCAACGAGCTCCTTTACTCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1781732 95 -   3067355 TTGCTCCACATATATC----TCCTAGAATA---AAGCCAATCGGAAGCCAACCTCACCCTAAAGAAATTCTTCCTGGCGTTTGCAACGAGCTCCTTTACTCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340060 93 - 171630274 TTGCTCCACGTATTTC----TCCCAGAATGTGTGAG-AGATTAAAAGCCGGCGCCG-CGCGAAGAAA---CTCCTGCCGTTTGCAACGAGCTCCTTTGCTGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            162947 94 -    375362 TTGCTCCACGTATGTG----TCCTAGAATGTGTGAG-AGATTAAAAGTCAGCGTCACCGTGAAGAAA---CTCCTGGCGTTTGCAACGAGCTCCTTTACTGC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      148521 95 -    373274 TTGCTCCGCATATTTC----TCCTAGAATG---AAGCCGACTGAAAGCCAGCGTCACCTTGAAGAAACTCCTCCTGGCGTTTGCCACGAGCTCTTTTACTCC
i cebCap1.NW_016108108v1   I 1271 I 50
s aotNan1.NW_018494050v1      110395 97 -    285216 TTGCTCCACATATTTC----TCCTCGAATGTGTGAG-AGATTAAAAGGCAGCGTCGCCCTGAAGAAACTCCTCCTGGCGTTTGCAACGAGCCCCTTTACTGC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486478 95 -   2232465 TTGCTCCACATATGTCTAATTCTTAG-------AAGCTTACTGGAACCCAACTTTTTCCTGAAGAAACTCTTCCTGGCATTTGCAACCACCTTCTTTACTCC
i otoGar3.GL873742         C 0 C 0

a score=300016.000000
s hg38.chr6_GL000254v2_alt     76394 49 +   4827813 TAACGTCCAGCTCTTGGCTC---A----GGAC-CTGCAGAGCGTCACAGCTGTTGCA
s panTro5.chr6              29046976 49 + 175400573 TAACGTCCAGCTCTTGGCTC---A----GGAC-CTGCAGAGCGGCACAGCTGTTGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29291030 49 + 173848474 TAACGTCCAGCTCTTGGCTC---A----GGAC-CTGCAGAGCGGCACAGCTGTTGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5091067 49 +   6154872 TAAAGTCCAGCTCTTGGCTC---A----GGAC-CTGCAGAGCGGCACAGCTGTTGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111932 53 + 122973662 TCACGTCCAGCTCTTGGCTC---AAAAGGGCT-CTGCAGATTGGCACAGCGGCTGCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29273506 50 + 172585720 TCACGTCCAGCTCTTGGCTC---A----GGACTCTGCAGAGCTGCACAGCGGTTGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28922277 50 - 170955103 TCACGTCCAGCTCTTGGCTC---A----GGACTCTGCAGAGCTGCACAGCGGTTGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1900004 50 -   2996164 TCACGTCCAGCTCTTGGCTC---A----GGACTCTGCAGAGCTGCACAGCGGTTGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1785229 50 -   2157725 TCACGTCCAGCTCTTGGCTC---A----GGACTCTGCAGAGCTGCACAGCGGCTGCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28239516 50 -  71996105 TCACGTCCAGCTCTTGGCTC---A----GGACTCTGCAGAGCTGCACAGCGGCTGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1907612 50 +   2316924 TCACGTCCAGCTCTTGGCTC---A----GGACTCTGCAGAGCTGCACAGCGGCTGCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1781827 50 -   3067355 TCACGTCCAGCTCTTGGCTC---A----GGACTCTGCAGAGCTGCACAGCGGCTGCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340153 35 - 171630274 TCGCGTCCAGCGCTCGGCTCCAGA----GGCCTCTGCAG------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            163041 49 -    375362 TCACGTCGCGCGCTCGGCTC--GA----GGCCTCTGCAGA--CTGACGGCGGCTGCG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      110492 43 -    285216 TCACGTGCAGCGCTCGACTC--------------TGCAGAGGTGGATGGCGGCTGCG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486573 47 -   2232465 TCCCATCCTGTTCTTAACTC---A----AAAATTTG--AAGCCACACTGTGGCTGG-
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      148616 50 -    373274 I

a score=578750.000000
s hg38.chr6_GL000254v2_alt     76443 68 +   4827813 GAAAGGCGAAGT---CGAGGTACAATCGGTGTTAACTACGTGTGCAGCCACCGTCTTCTTAGTCCTGTTAC
s panTro5.chr6              29047025 68 + 175400573 GAAAGGCGAAGT---CGAGGTACAATCGGTGTTAACTACGTGTGCAGCCACCGTCTTCTTAGTCCTGTTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29291079 68 + 173848474 GAAAGGCGAAGT---CGAGGTACAATCGGTGTTAACTACGTGTGCAGCCACCGTCTTCTTAGTCCTGTTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5091116 68 +   6154872 GAAAGGCGAAGT---CGAGGTACAATCGGTGTTAACTACGTGTGCAGCCACCGTCTTCTTAGTCCTGTTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111985 65 + 122973662 GAAAGGCGAAGT---CGCGGTACAATCGGTGTTAACTACATGTGCAGCCACCG---TCTTAGTCCTATCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29273556 68 + 172585720 ACAGGACGAAGT---CGCGGTACAACCAGTGTTAACTAAGTGTGCAGCCACCGTCTTCTTAGTCCTATTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28922327 68 - 170955103 ACAGGACGAAGT---CGCGGTACAACCAGTGTTAACTAAGTGTGCAGCCACCGTCTTCTTAGTCCTATTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1900054 68 -   2996164 ACAGGGCGAAGT---CGCGGTACAACCGGTGTTAACTAAGTGTGCAGCCACCGTCTTCTTAGTCCTATTAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1785279 68 -   2157725 GCAGGGGGAAGT---CGCGGTACAACCGGTGTTAACTAAGTGTGCAGCCACCGTCTTCTTAGTCCTATTAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28239566 68 -  71996105 GCAAGGCGAAGT---TGCGGTACACCCGGTGTTAACTAAGTGTGCAGCCACCGTCTTCTTAGTCCTATTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1907662 68 +   2316924 GCAGGGGGAAGT---CGCGGTACAACCGGTGTTAACTAAGTGTGCAGCCACCGTCTTCTTAGTCCTATTAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1781877 68 -   3067355 GCAAGGCGAAGT---CGCGGTACAACCGGTGTTAACTAAGTGTGCAGCCACCGTCTTCTTAGTCCTATTAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340188 63 - 171630274 ---GGGCGGAGT-----CGGGGCAGTCGGTGTCAAGTGCGTGTGCAGCCAGCGTCTCCGCGGTCCTAGGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            163090 68 -    375362 GAAAGGCGGCGT---CGCGGGGCAGTCCGTGTAAACTGCGTGTGCAGCCGGCGTCTCCTCAGGCCTGGGAC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      148666 68 -    373274 GAAAGGCGGGGT---CGCGGCGCAATCGGGGTTAACTACGAGTGCAGCCAGGGTCTCCTTAGCCCTATTAC
i cebCap1.NW_016108108v1   I 50 I 961
s aotNan1.NW_018494050v1      110535 68 -    285216 GAAAGGCGGAGG---CGTGGGGCAATCCGTGCAAACTGCGTGTGCGGCCAGCGGCTCCTCAGTCCTAGGAC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486620 69 -   2232465 GAAAGGCAGAGTCACCGCAGCACATTCTGTGTTA--CACCTGTGTGGCCCTCTTATTCTAAGTCCTATTAC
i otoGar3.GL873742         C 0 C 0

a score=320563.000000
s hg38.chr6_GL000254v2_alt     76511 39 +   4827813 AGGTGCAGAGGCAATATAAGTGAACCACTCACAAGTCGT
s panTro5.chr6              29047093 39 + 175400573 AGGTGCAGAGGCAATATAAGTGAACCACTCACAAGTCGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29291147 39 + 173848474 AGGTGCAGAGGCAATATAAGTGAACCACTCACAAGTCGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5091184 39 +   6154872 AGGTGCAGAGGCAATATAAGTGAACCACTCACAAGTCGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74112050 39 + 122973662 AGGTGCAGAGGTAATACAGGTGAATCCCTCACAAGTCGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29273624 39 + 172585720 AGGTGCTGAGGCAATATAAGTGAACCCTTCACAAGTCGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28922395 39 - 170955103 AGGTGCTGAGGCAATATAAGTGAACCCTTCACAAGTCGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1900122 39 -   2996164 AGGTGCTGAGGCAATATAAGTGAACCCTTCACAAGTCGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1785347 39 -   2157725 AGGTGCAGAGGCAATATAAGTGAACCCTTCACAAGTCGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28239634 39 -  71996105 AGGTGCAGAGGCAATAAAAGTGAACCCCTCACAAGTCGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1907730 39 +   2316924 AGGTGCAGAGGCAATATAAGTGAACCCTTCACAAGTCGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1781945 39 -   3067355 AGGTGCAGAGGCAATATAAGTGAACCCCTCACAAGTCGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340251 38 - 171630274 AGGTGCAGAGGCAA-ATAGGGGACCCCGTCCCTAGTCGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            163158 38 -    375362 AGGTGCAGAGGCAA-ACAGGGGAACCCCTCAGCAGTCGG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      110603 37 -    285216 AGGTGCAGAGGGAA-ATAGGGGAACCCCTCCCTAGTCG-
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1486689 39 -   2232465 AGGCTCAGAGGCAAGATAGTTGAGTCCCTCACAAGTCGA
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      148734 961 -    373274 I

a score=3169965.000000
s hg38.chr6_GL000254v2_alt     76550 352 +   4827813 GTGGGCTGACCTC-AG-ATTGAGTTTAGCGATGACTTGTGA-CCACCTGGTAGATGGTGGACCGTTACAGCATTTAGAAAGTGAGTAAAAGAAAGGATGCA-TACGGAAG-CCCACACGCTTGCTTGGCTCCTGCAGAT--G--GA--TAGAGGTCACTTTTCTGCCTTCTGGGTGTTTAGTAACTTATTTTTT------TTTTT---GC---------------------TTTGTTGGCATGAAATAAAGATGAAAATAAAAGCAGAT---TTTCTTTTAACA--AGTTAGTATTAACATGC-TTGCAGAGTATTTCCCTGTGGATTTCTGCTTAGTACTGTAATACCAGAATCAGAAACTCTACAAAGAGCTCTCTAATCTGGAGGTATGGGTTGTT
s panTro5.chr6              29047132 353 + 175400573 GTGGGCTGACCTC-AG-ATTGAGTTTAGCGATGACTAGCGA-CCACCTGGTAGATGGTGGACCGTTACAGCATTTAGAAAGTGAGTAAAAGAAAGGATGCA-TACGGAAG-CCCACACGCTTGCTTGGCTCCTGCAGAT--G--GA--GAGAGGTCACTTTTCTGCCTTCTGGGTGTTTAGTAACTTATTTTTT------TTTTTTTTGC---------------------TTTGTTGGCATGAAATAAAGATGAAAATAAAAGCAGAT---TTTCTTTTAACA--AATTAGTATTAACATGC-TTGCAGAGTATTTCCCTGTGGATTTCTGCTTAGTACTGTAATACCAGAATCAGAAACTCTACAAAGAGCTCT--AATCTGGAGGTGTGGGTTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29291186 349 + 173848474 GTGGGCTGACCTC-AG-ATTGAGTTTAGCGATGACTTGCGA-CCACCTGGTAGATGGTGGACCGTTACAGCATTTAGAAAGTGAGTAAAAGAAAGGATGCA-TACGGAAG-CCCACACGCTTGCTTGGCTCCTGCAGAT--G--GA--GAGAGGTCACTTTTCTGCCTTCTGGGTGTTTAGTAACTTATTTTTT------TTTT----GC---------------------TTTGTTGGCATGAAATAAAGATGAAAATAAAAGCAGAT---TTTCTTTTAACA--AGTTAGTATTAACATGC-TTGCAGAGTATTTCCCTGTGGATTTCTGCTTAGTACTGTAATACCAGAATCAGAAACTCTACAAAGAGCTCT--AATCTGGAGGTATGGGTTGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5091223 350 +   6154872 GTGGGCTGACCTC-AG-ATTGAGTTTAGCGATGACTTGTGA-CCACCTGGTAGATGGTGGACCGTTACAGCATTTAGAAAGTGAGTAAAAGAAAGGATGCA-TACCTAAG-CCCACACGCTTGCTTGGCTCCTGCAGAT--G--GA--GAGAGGTCACTTTTCTGCCTTCTGGGTGTTTAGTAACTTATTTTTT------TTTTT---TG---------------------TTTGTTGGCATGAAGTAAAGATGAAAATAAAAGCAGAT---TTTCTTTTAACA--AGTTAGTATTAACATGC-TTGCAGAGTATTTCCCTGTGGATTTCTGCTTAGTACTGTAATACCAGAATCAGAAACTCTACAAAGAGCTCT--AATCTGGAGGTATGGGTTGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74112089 351 + 122973662 GTGGGTTGACCTCAAA-ATTGACTTTAGCGATGGCTTGTGA-CCACCTGATAGGTGGTGGACCGTTACAGCGTTTAGAAAGTGAGTAAAAGAAAGGACGCA-TACGGAAGCCCCACTCGCTCGCTTGGCTTCTGCAGATGCG--GA--GAGAGGTCGCTTTTCTGCCTTCTGGGTGTTCAGTAACTTAATTTTT------TATCT--------------------------TTTGTTTAAATGAAATAGAGCTGAAAATAGAAGGAGAA---TTCCTTTTAACG--AGATAGTATTGAGATGC-TTGCAGAGTATCCCCGCGTGGA-TTCTGCTTAGCCCTGTGATACCAGCATCAGAAACTGTGCAAAGAGCTCT--AATCTGGAGGTGTGGGTTGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29273663 349 + 172585720 GTGGGCTGACCTC-AG-ATTGAGTTTAGCGATGACTTGTGA-CCCCCTGGTAGATGGTGGACCGTTACAGCGTTTAGAAAGTGAGTAAAAGAAAGGATGCA-TACAGAAG-CAGACACGCTTGCTTGGCTCCCGCAGAT--G--GA--GAGAGGTCGCTTTTCTGCCTTCTGGGTGTTTAGTGACTTATTTTTT------TTCC----CC---------------------TTTGTTGGCATGAAATAAAGCTGAAAATAAAAGCAGAT---TTTCTTTTAACA--AGTTAGTATTAACATAC-TTGCAGAGTATTTCCCTGTGGATTTCTGCTTAGTACTGTAATGCCAGAATCCGAAACTCTAAAAAGAGCTCT--AATCTGGAGATATGGGTTGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28922434 349 - 170955103 GTGGGCTGACCTC-AG-ATTGAGTTTAGCGATGACTTGTGA-CCCCCTGGTAGATGGTGGACCGTTACAGCGTTTAGAAAGTGAGTAAAAGAAAGGATGCA-TACAGAAG-CAGACACGCTTGCTTGGCTCCCGCAGAT--G--GA--GAGAGGTCGCTTTTCTGCCTTCTGGGTGTTTAGTGACTTATTTTTT------TTCC----CC---------------------TTTGTTGGCATGAAATAAAGCTGAAAATAAAAGCAGAT---TTTCTTTTAACA--AGTTAGTATTAACATAC-TTGCAGAGTATTTCCCTGTGGATTTCTGCTTAGTACTGTAATGCCAGAATCCGAAACTCTAAAAAGAGCTCT--AATCTGGAGATATGGGTTGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1900161 350 -   2996164 GTGGGCTGACCTC-AG-ATTGAGTTTAGCGATGACTTGTGACCCCCCTGGTAGATGGTGGACCGTTACAGCGTTTAGAAAGTGAGTAAAAGAAAGGATGCA-TACAGAAG-CAGACACGCTTGCTTGGCTCCCGCAGAT--G--GA--GAGAGGTCGCTTTTCTGCCTTCTGGGTGTTTAGTGACTTATTTTTT------TTCC----CC---------------------TTTGTTGGCATGAAATAAAGCTGAAAATAAAAGCAGAT---TTTCTTTTAACA--AGTTAGTATTAACATAC-TTGCAGAGTATTTCCCTGTGGATTTCTGCTTAGTACTGTAATGCCAGAATCCGAAACTCTAAAAAGAGCTCT--AATCTGGAGATATGGGTTGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1785386 349 -   2157725 GTGGGCTGAGCTC-AG-ATTGAGTTTAGCGATGACTTGTGA-CCCCCTGGTAGATGGTGGACCGTTACAGCGTTTAGAAAGTGAGTAAAAGAAAGGATGCA-TACAGAAG-CCGACACGCTTGCTTGGCTCCTGCAGAT--G--GA--GAGAGGTCGCTTTTCTGCCTTCTGGGTGTTTAGTGACTTATTTTTT------TTCC----CC---------------------TTTATTGGCATGAAATAAAGCTGAAAATAAAAGCAGAT---TTTCTTTTAACA--AGTTAGTATTAACATAC-TTGCAGAGTATTTCCCTGTGGATTTCTGCCTAGTACTGTAATGCCAGAATCCGAAACTCTAAAAAGAGCTCT--AATCTGGAGATATGGGTTGTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28239673 349 -  71996105 GTGGGCTGACCTC-AG-AATGAGTTTAGCGATGACTTGTGA-CCCCCTGGTAGATGGTGGACCGTTACAGCGTTTAGAAAGTGAGTAAAAGAAAGGATGCA-TACAGAAG-CCGACACGCTTGCTTGGCTCCTGCAGAT--G--GA--GAGAGGTCGCTTTTCTGCCTTCTGGGTGTTTAGTAACTTATTTTTT------TCCC----CC---------------------TTTGTTGGCATGAAATAAAGCTGAAAATAAAAGCAGAT---TTTCTTTTAACA--AGTTAGTATTAACATGC-TTGCAGAGTATTTCCCTGTGGATTTCTGCTTAGTACTGTAACGCCAGAATCCGAAACTCTAAAAAGAGCTCT--AATCTGGAGATATGGGTTGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1907769 349 +   2316924 GTGGGCTGAGCTC-AG-ATTGAGTTTAGCGATGACTTGTGA-CCCCCTGGCAGATGGTGGACCGTTACAGCGTTTAGAAAGTGAGTAAAAGAAAGGATGCA-TACAGAAG-CCGACACGCTTGCTTGGCTCCTGCAGAT--G--GA--GAGAGGTCGCTTTTCTGCCTTCTGGGTGTTTAGTGACTTATTTTTT------TTCC----CC---------------------TTTGTTGGCATGAAATAAAGCTGAAAATAAAAGCAGAT---TTTCTTTTAACA--AGTTAGTATTAACATAC-TTGCAGAGTATTTCCCTGTGGATTTCTGCCTAGTACTGTAATGCCAGAATCCGAAACTCTAAAAAGAGCTCT--AATCTGGAGATATGGGTTGTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1781984 347 -   3067355 GTGGGCTGACCTC-AC-ATTGAGTTTAGCGATGACTTGTGA-CCCCCTGGTAGATGGTGGACCGTTACAGCATTTAGAAAGTGAGTAAAAGAAAGGATGCA-TACAGAAG-CCAACAGGCTTGCTTGGCTCCTGCAGAT--G--GA--GAGAGGTCGCTTTTCTGCCTTCTGGGTGTTTAGTAACTTA-TTTTT------TCCC----CC---------------------TTTGTTGGCATGAAATAAAGCTGAAAATAAAA-CAGAT---TTTCTTTTAACA--AGTTAGTATTAACATGC-TTGCAGAGTATTTCCCTGTGGACTTCTGCTTAGTACTGTAATGCCAGAATCCGAAACTCTAAAAAGAGCTCT--AATCTGGAGATATGGGTTGTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340289 373 - 171630274 GTGGGTTGAGCTC-AG-ATTGAGTTTAGCGACGCC--GTTA-CCCCCTGGCAGGCGGTGGAA-GTTACAGCGTTTAGAACGTGAGTGAAAGAGAGGATGC--TACGGAAG-CCCACCCGCTTGCTTGGCTTCTGCAGAT--G--GA--GAGAGGTCGCTTTTCTGCCTTCTGGGCGTTTACTAACTTATTTTTTAAAATCTTTTG---TTTTAATGAAATAGCTCTGAAAATTTGTTTAAATAAAATAGCTCTGAAAATAGAAGGAGAT---TTTATTTTAACA--AGATAGTATTAGGATGCGTTGCAGAGTATCCCCGGGAGGATTTCTGCTTAGCGCTGTGATACCAGGATGA-AAACTGTGCAAAGAGCTCT--AATCTGGGGGTGCAGGTTGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            163196 335 -    375362 GTGGGTTGACCTC-AG-ATTGGGTTCAGCGACGCCCTGGTA-GCGCCTGGCAGGCGGTGGAC-GTTTCCGCGTTTAGAAAGTGAGT--AAAAGAGGATGCG-TACGGAAG-CCCACCCGCGTGCTTGGCTTCTGCAGAT--G--GA--GAGAGGTCGCTTTTCTGCCTTCTGGGTGTTTACTAACGTATTTTTT------TTTTC---CC---------------------TTTGTTGGCATGAAATAGAGCTGAAAATAAAAGCAGATTCATTTCTTTTAACA--AGATGGTACTGAGATGC-TTGCAGAGTATTTCCCTGTGGATTTCTGCTTAGCGCTGTGATACCA---------------CAAACAGCTCT--AATCTGGAGGTGTGGGTTATC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      149695 348 -    373274 GTGGGTTAACCTC-AA-ATTGACTTTAGGGAAGGCTTGTGA-TCACCTGGTAGGTGGTGGAAGGTTACAGCGTTTAGAAAGTGAGTAAAACAGCAGATGCA-TGCGGCAG-CCCACTGGGTTGCTTGGCTTCTGCACAT--G--GACGAAGAGGCTGCTTTTCTGCCTTCTGGGTGTTTAGTAACTTAATTTTTAA----TCC----------------------------TTCGTTGGAATGAAATAGAGCTGAAAATAAAAGGAGAT---TTTCTTTTAGCA--AAATAGGATTAAGATGC-TTCCCAAATATCCGCCTGTGAATTTCTGCTTAGGACTGTGATAACCGAATTAGAAATTGTGC--AGAGTTCT--AATCTGGAGATATGGGTTGTT
i cebCap1.NW_016108108v1   I 961 C 0
s aotNan1.NW_018494050v1      110640 349 -    285216 GTGGGTTGACCCC-AG-ACTGAGTTTAGCGACGCCCTGTGA-CCACCTGGCAGGCGGTGGAC-GTTACAGCGTTTAGAAAGTGAGCAAAAGAGAGGACGCC-TTCGGAAG-CCCACCCTCTTGCTTGGCTTCTGCAGAT--G--GA--GAGAGGTCGCTTTTCTGCCTTCTGGGTGTTTACTAACTTATTTTTTTAAA--TCT----------------------------TTTGTTTAAATGAAATAGCTCTGAAAATAGAAGGAGAT---TTTATTTTAACA--AGATAGTAGTAAGATGCGTTGCAGGGTATCCCCGGGAGGATTTCTGCTTAGCGCTGTGATACCAGAATGA-AAACTGTGCAAAGAGCTCT--AATCTGGAGGTGTAGGTTGTT
i aotNan1.NW_018494050v1   C 0 T 8968
s otoGar3.GL873742           1486728 331 -   2232465 CTGAGTTGACCTC-AACATTGACTTTAAGCGTCCCTTGTGA-CCACCTGGTGGACAGTGGACAGTTACAACTTTT------TAAGAAAAAGAGAGGATACATTATGGAAG-CCCTTTGGGTTGCTTAGCTTCTACAAAT--GAAGA--AAAAGATGGCTTTTCTGTTTTCTG--------------TCCTCCAC------CCCC----GC---------------------TTTGGTGGAAGGAAATAGGACTGGAAATAAAAAGGGGG---GTTGTTTAAAAAACAAAAGATATTAAGATGC-TTGCGGAGTATCCTATTGTGGAGTTCTCCTTA-CACTGTGATAGCAGAATCTCAAAC--TGCAAGCAGTTCT--GATCTGGAGACA-GGGGCGTT
i otoGar3.GL873742         C 0 C 0

a score=955904.000000
s hg38.chr6_GL000254v2_alt     76902  99 +   4827813 CCCTAGCTTAGAAGGAGGTTATTTCTGGAGAGTAAGTACAATCAGGTAGAAAAGGATCCGTTGGGCTTGGGAGAATAAACGTTC----ATTACT----TTTATTTAT
s panTro5.chr6              29047485  99 + 175400573 CCCTAGCTTACAAGGAGGTTATTTCTGGAGAGTAAGTACAATGAGGTAGAAAAGGGTCCGTTGGGCTTGGGAGAATAAATGTTC----ATTACT----TTTATTTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29291535  99 + 173848474 CCCTAGCTTACAAGGAGGTTATTTCTGGAGAGTAAGTACAATGAGGTAGAAAAGGGTCCGTTGGGCTTGGGAGAATAAATGTTC----ATTACT----TTTATTTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5091573  99 +   6154872 CCCTAGCTTAGAAGGAGGTTATTTCTGGAGAGTAAGTACAATGAGGTAGAAAAGGATCCGTTGGGCTTGGGAGAATAAACGTTC----ATTACT----TTTATTTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74112440 102 + 122973662 CAGTAGCTTAGAAAGAGGTTATTCCTGGAGAATAAGTAC-ATCATGTAGAAAAGGATCCATTGGGATTGGGAGAATAAAAGTTCATTTATTATT----TTTATTTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29274012  99 + 172585720 CCCTAGCTTAGAAGGAGATTATTTCCGGAGAGTAAGTACAATGAGGTAGAAAAGGATCCGTTGGGCTTGGGAGAATAAACGTTC----ATTACT----TTTATGTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28922783  99 - 170955103 CCCTAGCTTAGAAGGAGATTATTTCCGGAGAGTAAGTACAATGAGGTAGAAAAGGATCCGTTGGGCTTGGGAGAATAAACGTTC----ATTACT----TTTATGTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1900511  99 -   2996164 CCCTAGCTTAGAAGGAGATTATTTCCGGAGAGTAAGTACAATGAGGTAGAAAAGGATCCGTTGGGCTTGGGAGAATAAACGTTC----ATTACT----TTTATGTAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1785735  99 -   2157725 CCCTAGCTTAGAAGGAGATTATTTCCGGAGAGTAAGTACAATGAGGTAGAAAAGGATCCGTTGGGCTTGGGAGAATAAACGTTC----ATTACT----TTTATGTAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28240022  99 -  71996105 TCCTAGCTTAGAAGGAGATTATTTCCGGAGAGTAAGTACAATGAGGTAGAAAAGGATCCGTTGGGCTTGGGAGAATAAACGTTC----ATTACT----TTTATGTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1908118  99 +   2316924 CCCTAGCTTAGAAGGAGATTATTTCCGGAGAGTAAGTACAATGAGGTAGAAAAGGATCCGTTGGGCTTGGGAGAATAAACGTTC----ATTACT----TTTATGTAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782331  99 -   3067355 CCCTAGCTTAGAAGGAGATTATTTCCGGAGAGTAAGTACAATGAAGTAGAAAAGGATCCGTTGGGCTTGGAAGAATAAACGTTC----ATTACT----TTTATGTAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340662 102 - 171630274 CACTAGCCTAGAAGCAGGTTATTCCTGGAGAATAAGTGCGGC-AGGTAGAAAAGGGTCCATCGGGATTGGGAGAATAAAAGTTC----ATTCGTTGTATTTATTTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            163531  98 -    375362 CG-TAGCTTTAAAGGAGGATATTCCTGGAGAGTAAGTACAGTGAGGTAGAAATGGATCCATTGGGATTGGGAGAATATAGGTTC----ATTACT----TTTATTTAT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      150043  99 -    373274 CAGTAGCTAAGAAGGAAGTTATTCCTAGAGAGTAACTTCAGTGAGGTTGAAAATGGTCCTCTGGGATTGGAAGAATAAAAGTTC----ATTATT----TTTATTTAT
i cebCap1.NW_016108108v1   C 0 I 179
s aotNan1.NW_018494050v1      102021  99 -    285216 CCGTAGCTTTAAAGGAGGTTATTCCTGGAGAGTAAGTACAGTGAGGTAGAAAAGGATCCATTGGGATTGGGAGAATAAAGGTTC----ATTACT----TTTATTTAT
i aotNan1.NW_018494050v1   T 8968 C 0
s otoGar3.GL873742           1487059  99 -   2232465 CAATAGTTCAGAAGAAAGATATTTCTGGAAAGTAAGTAAAGTGAGCTTTAAAAAACTTCTCTGGGATTGAGAGAATAAGAGTTC----ATTGTT----TATTTTTAA
i otoGar3.GL873742         C 0 C 0

a score=1331107.000000
s hg38.chr6_GL000254v2_alt     77001 158 +   4827813 GAAAAAC--AACAAAATGAGCTTTCTCCTATACTGATCTTGTTTCCTGGAGTTCAGAGTATTTGCATCTCAGACCAGAAACTTCCTT-GAGGACCCAGAGAAGTACTTTTTACTTCCACCAAATTTCAGCTGAGGTGACTG-CTATCTTTTCATCATTTGCC
s panTro5.chr6              29047584 158 + 175400573 GAAAAAC--AACAAAATGAGCTTTCTCCTATACTGATCTTGTTTCCTGGAGTTCAGAGTATTTGCATCTCAGACCAGAAACTTCCTT-GAGGACCCAGAGAAGTACTTTTTACTTCCACCAAATTTCAGCTGAGGTGACTG-CTATCTTTTCATCATTTGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29291634 158 + 173848474 GAAAAAC--AACAAAATGAGCTTTCTCCTATACTGATCTTGTTTCCTGGAGTTCAGAGTATTTGCATCTCAGACCAGAAACTTCCTT-GAGGACCCAGAGAAGTACTTTATACTTCCACCAAATTTCAGCTGAGGTGACTG-CTATCTTTTCATCATTTGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5091672 158 +   6154872 GAAAAAC--AACAAAATGAGCTTTCTCCTATACTGATCTTGTTTCCTGGAGTTCAGAGTATTTGCATCTCAGACCAGAAACTTCCTT-GAGGACCCAGAGAAGTACTTTTTACTTCCACCAAATTTCAGCTGAGGTGACTG-CTATCTTTTCATCATTTGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74112542 153 + 122973662 GGAAAAC--AAAGAAATGAGCTTTACCCTATACTGATCTTGGTTCCTGGAGTTCAGAGTGCTTGCATCTCAGGGCGGAAACTTCCTTAGAGGACCTAGAGATGT------TCCCCCTACCAAATGTCAGCTGAAGTGACTG-TGATCTTTTTCTCATTTGTC
i nomLeu3.chr1a            C 0 I 19
s rheMac8.chr4              29274111 160 + 172585720 GAAAAAC--AACAAAATGAGCTTTCTCCTATACTGATCTTGGTTCCTGGAGTTCAGAGTGTTTGCATCTCAGACCAGAAACTTCCTCAGAGGACCCAGAGAAGTACTTTTTACTTCCACCAAATTTCAGCTGAGGTGACTGACTATCTTTTCATCATTTGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28922882 160 - 170955103 GAAAAAC--AACAAAATGAGCTTTCTCCTATACTGATCTTGGTTCCTGGAGTTCAGAGTGTTTGCATCTCAGACCAGAAACTTCCTCAGAGGACCCAGAGAAGTACTTTTTACTTCCACCAAATTTCAGCTGAGGTGACTGACTATCTTTTCATCATTTGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1900610 160 -   2996164 GAAAAAC--AACAAAATGAGCTTTCTCCTATACTGATCTTGGTTCCTGGAGTTCAGAGTGTTTGCATCTCAGACCAGAAACTTCCTCAGAGGACCCAGAGAAGTACTTTTTACTTCCACCAAATTTCAGCTGAGGTGACTGACTATCTTTTCATCATTTGCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1785834 156 -   2157725 GAAAAAC--AACAAAATGAGCTTTCTCCTATAGTGATCTTGGTTCCTGGGGTTCAGAGTGTTTGCATCTCAGACCAGAAACTTCCTCAGAGGACCCAGAGAAGTACTTTTTACTTCCACCAAATTTCAGCTGAGG----TGACTATCTTTTCATCATTTGCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28240121 156 -  71996105 GAAAAAC--AACAAAATGAGCTTTCTCCTATACTGATCTTGGTTCCTGGAGTTCAGAATGTTAGCATCTCAGACCAGAAACTTCCTCAGAGGACCCAGAGAAGTACTTTTTACTTCCACCAAATTTCAGCTGAGG----TGACTATCTTTTCATCATTTGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1908217 156 +   2316924 GAAAAAC--AACAAAATGAGCTTTCTCCTATAGTGATCTTGGTTCCTGGAGTTCAGAGTGTTTGCATCTCAGACCAGAAACTTCCTCAGAGGACCCAGAGAAGTACTTTTTACTTCCACCAAATTTTAGCTGAGG----TGACTATCTTTTCATCATTTGCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782430 159 -   3067355 GAAAAAC--AACAAAATGAGCTTTCTCCTATACTGATCTTGGTTCCTGGAGTTCAGAGTGTTTGCATCTCAGACCAGAAACTTCCTCAGAGGACCCAGAGAAGTGCTTTTTACTTCCACCAAATTTCAGCTGAGATGACTG-CTATCTTTTCATCATTTGCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340764 148 - 171630274 GGAAAAC--AAAGAAATGAGCTTTCCCCTATGCTGATCTTGGTCCCGGGAGTCCA-AGTGCTAGCACCTCGGGACAGAAAGTTCCTTAGAGAACTCAGAGAAGTGCTTTCCCC----------TTTCAGCGGAAGCAACTG-TGGTCTTTTCCTCATTTGTC
i calJac3.chr4             C 0 I 19
s saiBol1.JH378348            163629 157 -    375362 GAGAAAC--AACAAAATGAGCTTTCTCCTATACTGACCTTGGTCCCTGGAGTTCAGAGTGT--GCTTCTCAGACCAGAAGATTCCTCAGAGGACCCAGAGAAATACTTTTTACTCCCACTAAATTTCAGCTTAGGTAACCG-CTATCTTTTCATCACTTGTC
i saiBol1.JH378348         C 0 I 1
s aotNan1.NW_018494050v1      102120 157 -    285216 GAGAAAC--AACAAAATGAGCTTTCTCCTATACTGATCTTGGTCCCTGGAGTTCAGAGTAT--GCTTCACAGACCAGAAAGTTCCTCAGAGGACCCAGAGAAATACTTTTTACTTCCAGCAAATTTCAGCTGAGGTAACCG-CTATCTTTTCATCATTTGCC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1487158 133 -   2232465 GAAAAACAAAAAAAAATGAGCTTTGCTGTAGACTGAACTTG----------------------CCATTTCAGATCAGACACTTCCTTAGAAGACCCAGAGAAGTACTATTTCCCTTTACCAAATTTCAGCGGAAGTGACTG-CCGTC------TCATTTGTC
i otoGar3.GL873742         C 0 C 0
e cebCap1.NW_016108108v1      150142 179 -    373274 I

a score=489118.000000
s hg38.chr6_GL000254v2_alt     77159 57 +   4827813 TTGTGTTTGTAGTTAAATAGT-----TTAAG-----TTTCAAACTATGTGGGTCTCTAATGGAAAAA
s panTro5.chr6              29047742 57 + 175400573 GTGTGTTTGTAGTTAAATAGT-----TTAAG-----TTTCAAACTATGTGGGTCTCTAATGGAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29291792 57 + 173848474 GTGTGTTTGTAGTTAAATAGT-----TTAAG-----TTTCAAACTATGTGGGTCTCTAATGGAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5091830 57 +   6154872 GTGTGTTTGTAGTTAAATAGT-----TTAAG-----TTTCAAACTATGTGGGTCTCTAATGGAAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74112714 62 + 122973662 GTATGCTTGTAGTTAAATAGTTTACATTAAG-----TTTTAGAGTTTGTGGGTTTCCAATGGAAAAA
i nomLeu3.chr1a            I 19 C 0
s rheMac8.chr4              29274271 55 + 172585720 CTGTGTTTGTAGTTAAATAGT-----CTAAG-----TTTCAAACTATGGGAGTCTCTAATGG--AAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28923042 55 - 170955103 CTGTGTTTGTAGTTAAATAGT-----CTAAG-----TTTCAAACTATGGGAGTCTCTAATGG--AAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1900770 55 -   2996164 CTGTGTTTGTAGTTAAATAGT-----CTAAG-----TTTCAAACTATGTGAGTCTCTAATGG--AAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1785990 57 -   2157725 CTGTGTTTGTAGTTAAATAGT-----CTAAG-----TTTCAAACTATGTGAGTCTCTAATGGAAAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28240277 55 -  71996105 CTGTGTTTGTAGTTAAATAG-------TAAG-----TTTCAAACTATGTGAGTCTCTAATGGAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1908373 57 +   2316924 CTGTGTTTGTAGTTAAATAGT-----CTAAG-----TTTCAAACTATGTGAGTCTCTAATGGAAAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782589 57 -   3067355 CTGTGTTTGTAGTTAAATAGT-----TTAAG-----TTTCAAACTATGTGGGTCTCTAATGGAAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340931 54 - 171630274 GTATGCTTGTAGTTAAATAGT-----TTACA--------CTAAGTTTTAGAGTTTTTAGTGAAAAGA
i calJac3.chr4             I 19 T 21049
s saiBol1.JH378348            163787 56 -    375362 -TGTGTTTGTAGTTAAATAGT-----TTAAG-----TTTCCGAGTTTGTGATTCTCTAATGGAAAAA
i saiBol1.JH378348         I 1 C 0
s cebCap1.NW_016108108v1      150321 62 -    373274 TTATGTTTGTAGTTAAATAGT-----TTGGACTGAATTTCAGAGTTTGTTGGTCTCTAGTGGAAAAT
i cebCap1.NW_016108108v1   I 179 C 0
s aotNan1.NW_018494050v1      102277 57 -    285216 ATGTGTTTGTAGTTAAATAGC-----TTAAG-----GTTCCGAGTTTGTGGGTCTCTAATGGAAAAA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1487291 62 -   2232465 CTATGTTTGTAGTTAAATTGTTTATGTTAAG-----CTTCAGAGTTTGTGGGTCTCTGACAGAAAAA
i otoGar3.GL873742         C 0 C 0

a score=401269.000000
s hg38.chr6_GL000254v2_alt     77216 49 +   4827813 GTGACCACCAGCACATCA-----AATCATCAACCACCGGCAGTGTAATCT---------TTTA
s panTro5.chr6              29047799 49 + 175400573 GTGACCACCAGCACATCA-----AATCGTCAACCACCGGCAGTGTAATCT---------TTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29291849 49 + 173848474 GTGACCACCAGCACATCA-----AATCGTCAACCACCGGCAGTGTAATCT---------TTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5091887 49 +   6154872 GTGACCACCAGCACATCA-----AATCGTCAACCACCGGCAGTGTAATCT---------TTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74112776 48 + 122973662 GTGACCACCAGCACATC------AGTCCTCAGCCACTGGCAGTGAAATCT---------TTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29274326 44 + 172585720 GTGACCACCTG-----CT-----GGTGGTCAAACACCGGCCGTGTAATCG---------TTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28923097 44 - 170955103 GTGACCACCTG-----CT-----GGTGGTCAAACACCGGCCGTGTAATCG---------TTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1900825 44 -   2996164 GTGACCACCTG-----CT-----GGTGGTCAAACACCGGCCGTGTAATCG---------TTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1786047 49 -   2157725 GTGACCACCAGCACATCA-----AATCGTCAACCACCGGCCGTGTAATCG---------TTTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28240332 49 -  71996105 GTGACCACCAGCACATCA-----AATCGTCAACCACTGGCCGTGTAATCG---------TTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1908430 49 +   2316924 GTGACCACCAGCACATCA-----AATCGTCAACCACCGGCCGTGTAATCG---------TTTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782646 49 -   3067355 GTGACCACCAGCACATCA-----AACTGTCAACCACCGGCCGTGTAATCG---------TTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171319936 54 - 171630274 GTGACCACCAGTGCATCGCCAGCAATCATTAACCACTGGCAGTGGAATCC---------TTTA
i calJac3.chr4             T 21049 I 54
s saiBol1.JH378348            163843 49 -    375362 GTGACCGCCAGCACATCA-----AATCATCAAGCACTGGCAGTGAAATCT---------TTTA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      150383 54 -    373274 GTGACCACCAGCGCATCGCCAGCAATCATCAACCACTGGCAGTGGAATCT---------TTTA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      102334 49 -    285216 GTGACCACCGACACATCA-----AACCTTCAACCACTGGCAGTGAAATCT---------TTTA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1487353 58 -   2232465 GTAACCATCACCACATCA-----AACTGTCAACCACTGGCAGCGAAATGGAATGAAAGATTTA
i otoGar3.GL873742         C 0 C 0

a score=103440.000000
s hg38.chr6_GL000254v2_alt     77265 10 +   4827813 GTGAAAGCTT
s panTro5.chr6              29047848 10 + 175400573 GTGAAAGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29291898 10 + 173848474 GTGAAAGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5091936 10 +   6154872 GTGAAAGCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74112824 10 + 122973662 GTGAAAGCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29274370 10 + 172585720 GTGAAAGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28923141 10 - 170955103 GTGAAAGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1900869 10 -   2996164 GTGAAAGCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1786096 10 -   2157725 GTGAAAGCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28240381 10 -  71996105 GTGAAAGCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1908479 10 +   2316924 GTGAAAGCTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782695 10 -   3067355 GTGAAAGCTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            163892 10 -    375362 GTGAAATCTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      150437 10 -    373274 GTGAAAGCTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      102383 10 -    285216 GTGAAAGCTC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1487411 10 -   2232465 GTGACAGTTT
i otoGar3.GL873742         C 0 I 446
e calJac3.chr4             171319990 54 - 171630274 I

a score=84313.000000
s hg38.chr6_GL000254v2_alt     77275 9 +   4827813 GTAGGGCTT
s panTro5.chr6              29047858 9 + 175400573 GTAGGGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29291908 9 + 173848474 GTAGGGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5091946 9 +   6154872 GTAGGGCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74112834 9 + 122973662 GTAGGGCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29274380 9 + 172585720 GTAGGGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28923151 9 - 170955103 GTAGGGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1900879 9 -   2996164 GTAGGGCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1786106 9 -   2157725 GTAGGGCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28240391 9 -  71996105 GTAGGGCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1908489 9 +   2316924 GTAGGGCTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782705 9 -   3067355 GTAGGGCTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            163902 9 -    375362 GAAGGGCTT
i saiBol1.JH378348         C 0 I 1
s cebCap1.NW_016108108v1      150447 9 -    373274 ATAGGGCTT
i cebCap1.NW_016108108v1   C 0 I 6599
s aotNan1.NW_018494050v1      102393 9 -    285216 GCAGGGCTT
i aotNan1.NW_018494050v1   C 0 I 1
e otoGar3.GL873742           1487421 446 -   2232465 I
e calJac3.chr4             171319990 54 - 171630274 I

a score=216084.000000
s hg38.chr6_GL000254v2_alt     77284 34 +   4827813 CT-CAACCTGGTTAGAGGGAGTTAGAAGAAGAAAC
s panTro5.chr6              29047867 34 + 175400573 CT-CAACCTGGTTAGAGGGAGTTAGAAGAAGAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29291917 34 + 173848474 CT-CAACCTGGTTAGAGGGAGTTAGAAGAAGAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5091955 34 +   6154872 CT-CAACCTGCTTAGAGGGAGTTAGAAGAAGAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74112843 26 + 122973662 CTGCAACCTGG---------GTGAGAAGAAGAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29274389 35 + 172585720 CTGCAACCTAGTTAGAGGGAGTTAGAAGAAGAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28923160 35 - 170955103 CTGCAACCTAGTTAGAGGGAGTTAGAAGAAGAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1900888 35 -   2996164 CTGCAACCTGGTTAGAGGGAGTTAGAAGAAGAAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1786115 35 -   2157725 CTGCAACCTAGTTAGAGGGAGTTAGAAGAAGAAAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28240400 35 -  71996105 CTGCAACCTAGTTAGAGGGAGTTAGAAAAAGAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1908498 35 +   2316924 CTGCAACCTAGTTAGAGGGAGTTAGAAGAAGAAAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782714 35 -   3067355 CTGCAACCTGGTTTGAGGGAGTTAAAAGAAGAAAC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            163912 34 -    375362 -TGCAGCCTGGTTAGGAAGAGTTAGAAGAAGAAAC
i saiBol1.JH378348         I 1 C 0
s aotNan1.NW_018494050v1      102403 31 -    285216 -TGCAGCCTGGTTAGGAGGAGTTAGAAGAAAC---
i aotNan1.NW_018494050v1   I 1 C 0
e otoGar3.GL873742           1487421 446 -   2232465 I
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171319990 54 - 171630274 I

a score=33315.000000
s hg38.chr6_GL000254v2_alt     77318 4 +   4827813 AGAA
s panTro5.chr6              29047901 4 + 175400573 AGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29291951 4 + 173848474 AGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5091989 4 +   6154872 AGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74112869 4 + 122973662 ACAA
i nomLeu3.chr1a            C 0 T 15240
s rheMac8.chr4              29274424 4 + 172585720 AGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28923195 4 - 170955103 AGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1900923 4 -   2996164 AGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1786150 4 -   2157725 AGAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28240435 4 -  71996105 AGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1908533 4 +   2316924 AGAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782749 4 -   3067355 AGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171320044 4 - 171630274 ACAA
i calJac3.chr4             I 54 C 0
s saiBol1.JH378348            163946 4 -    375362 AGAA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      102434 4 -    285216 AGAA
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1487421 446 -   2232465 I
e cebCap1.NW_016108108v1      150456 6599 -    373274 I

a score=280582.000000
s hg38.chr6_GL000254v2_alt     77322 37 +   4827813 AAGGACGTGAGCCTTTTTAGCTTCTGATCTGAAATCA
s panTro5.chr6              29047905 37 + 175400573 AAGGACGTGAGCCTTTTTAGCTTCCGATCTGAAATCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29291955 37 + 173848474 AAGGACGTGAGCCTTTTTAGCTTCCGATCTGAAATCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5091993 36 +   6154872 AAGGACGTGAGCCTTTTTAGCTTCCGATCTG-AATCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74097633 36 + 122973662 AAGGACTTGAGCC-TTTTAGCTTCCGATCTGAAATCA
i nomLeu3.chr1a            T 15240 I 15524
s rheMac8.chr4              29274428 36 + 172585720 AAGGACTTGAGGC-TTTTAGCTTCCGATCTGAAATCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28923199 36 - 170955103 AAGGACTTGAGGC-TTTTAGCTTCCGATCTGAAATCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1900927 36 -   2996164 AAGGACTTGAGGC-TTTTAGCTTCCGATCTGAAATCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1786154 36 -   2157725 AAGGACTTGAGGC-TTTTAGCTTCTGATCTGAAATCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28240439 36 -  71996105 AAGGACTTGAGGC-TTTTAGCTTCCGATCTGAAATCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1908537 36 +   2316924 AAGGACTTGAGGC-TTTTAGCTTCTGATCTGAAATCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782753 36 -   3067355 AAGGACTTGAGGC-TTTTAGCTTCCGATCTGAAATCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171320048 35 - 171630274 AAGAACTTGAGCC--TTAACCTTCTGATCTAAAATCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            163950 36 -    375362 AAGGACTTGAGCC-TTTTAGCTTCCCACCTGAAATCA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      102438 36 -    285216 AAGGACTTGAGCC-TTTTAGCTTCCCACCTGAAATCA
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1487421 446 -   2232465 I
e cebCap1.NW_016108108v1      150456 6599 -    373274 I

a score=58331.000000
s hg38.chr6_GL000254v2_alt     77359 6 +   4827813 GACTTG
s panTro5.chr6              29047942 6 + 175400573 GACTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29291992 6 + 173848474 GACTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5092029 6 +   6154872 GACTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74113193 6 + 122973662 GACTTG
i nomLeu3.chr1a            I 15524 C 0
s rheMac8.chr4              29274464 6 + 172585720 GACTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28923235 6 - 170955103 GACTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1900963 6 -   2996164 GACTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1786190 6 -   2157725 GACTTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28240475 6 -  71996105 GACTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1908573 6 +   2316924 GACTTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782789 6 -   3067355 GACTTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171320083 6 - 171630274 GACTTA
i calJac3.chr4             C 0 I 20947
s saiBol1.JH378348            163986 6 -    375362 GACTTG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      102474 6 -    285216 GACTTG
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1487421 446 -   2232465 I
e cebCap1.NW_016108108v1      150456 6599 -    373274 I

a score=1498922.000000
s hg38.chr6_GL000254v2_alt     77365 190 +   4827813 GGCCACACAGTTCTATGGTTTCTGATGATTTCATTTACAACTAGAAATTGGTTGCATGGCCAGGAATACTGCTTGCTTCCCTCGTGCGTGGTTCATGTTAGTGATTGGT-GGACTGCTTAGAAAATATAAGTGGATAATCCTAAGCAGCAAATAGATTCAAAGGAATAAACACGAGTCACCTCTGTGTATG
s panTro5.chr6              29047948 190 + 175400573 GGCCTCACAGTTCTATGGTTTCTGATGATTTCATTTACAACTAGAAATTGGTTGCATGGCCAGGAATACTGCTTGCTTCCCTCGTGCGTGGTTCATGTTAGTGATTGGT-GGACTGCTTAGAAAATATAAGTGGATAATCCTAAGCAGCAAATAGATTCAAAGGAATAAACACGAGTCACCTCTGTGTATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29291998 190 + 173848474 GGCCACACAGTTCTATGGTTTCTGATGATTTCATTTACAACTAGAAATTGGTTGCATGGCCAGGAATACTGCTTGCTTCCCTCGTGCGTGGTTCATGTTAGTGATTGGT-GGACTGCTTAGAAAATATAAGTGGATAATCCTAAGCAGCAAATAGATTCAAAGGAATAAACACGAGTCACCTCTGTGTATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5092035 190 +   6154872 GGCCACACAGTTCTATGGTTTCTGATGATTTCATTTACAACTAGAAATTGGTTGCATGGCCAGGAATACTACTTGCTTCCCTCGTGCGTGGTTCATGTTAGTGATTGGT-GGACTGCTTAGAAAATATAAGTGGATAATCCTAAGCAGCAAATAGATTCAAAGGAATAAACACGAGTCACCTCTGTGTATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74113199 191 + 122973662 GGCCACATGGTTCTATGGTTTCTGATTATTTCATTTACAACTAGAAATAGGCTGGATGGCCAGGAATAGTACTTGCTTCCATAGTGCGTGGTTCATCTTAGTGACTGCTGGGACTGCTTAGAAAGAATAGGTGGATAATCGTAAGCAGCAAATAACCTTAAGTGAATGAACACGAATTACCTCTCTGTATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29274470 190 + 172585720 GGCCGCACAGTTCTATGGTTCCTGATTATTTCATTTACAACTAGAAATCGGCTGCATGGCCAGGAATACTACTTGCTTCCCTCGTGCGTGGTCCATGTTAGTAACTGGT-GGACTGCTTAGAAAATATAAGTGGATAACCCTAAGCAGCAAATAGATTCAAAGGAATAAACATGAGTCACCTCTGTGTATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28923241 190 - 170955103 GGCCGCACAGTTCTATGGTTCCTGATTATTTCATTTACAACTAGAAATCGGCTGCATGGCCAGGAATACTACTTGCTTCCCTCGTGCGTGGTCCATGTTAGTAACTGGT-GGACTGCTTAGAAAATATAAGTGGATAACCCTAAGCAGCAAATAGATTCAAAGGAATAAACATGAGTCACCTCTGTGTATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1900969 190 -   2996164 GGCCGCACAGTTCTATGGTTCCTGATGATTTCATTTACAACTAGAAATCGGCTGCATGGCCAGGAATACTACTTGCTTCCCTTGTGCGTGGTCCATGTTAGTAACTGGT-GGACTGCTTAGAAAATATAAGTGGATAACCCTAAGCAGCAAATAGATTCAAAGGAATAAACATGAGTCACCTCTGTGTATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1786196 190 -   2157725 GGCCGCACAGTTCTATGGTTCCTGATGATTTCATTTACAACTAGAAATCGGCTGCATGGCCAGGAATACTACTTGCTTCCCTCGTGCGTGGTCCATGTTAGTAACTGGT-GGACTGCTTAGAAAATATGAGTGGATAATCCTAAGCAGCAAATAGATTCAAAGGAATAAACACGAGTCACCTCTGTGTATG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28240481 190 -  71996105 GGCCGCACAGTTCTATGGTTCCTGATGATTTCATTTACAACTAGAAATCGGCTTTGTGGCCAGGAATACTACTTGCTTCCCTCGTGCGTGGTCCATGTTAGTAACTGGT-GGACTGCTTAGAAAATATAAGTGGATAACCCTAAGCAGCAAATAGATTCAAAGGAATAAACACGAGTCACCTCTATGTATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1908579 190 +   2316924 GGCCGCACAGTTCTCTGGTTCCTGATGATTTCATTTACAACTAGAAATCGGCTGCATGGCCAGGAATACTACTTGCTTCCCTCGTGCGTGGTCCATGTTAGTAACTGGT-GGACTGCTTAGAAAATATAAGTGGATAATCCTAAGCAGCAAATAGATTCAAAGGAATAAACACGAGTCACCTCTGTGTATG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782795 190 -   3067355 GGCCGCACAGTTCCATGGTTCCTGACGATTTCATTTACAACTAGAAATCGGCTGCATGGCCAGGAATACTACTTGCTTCCCTCGTGCATGGTCCATGTTAGTAATTGGT-GGACAGCTTAGAAAATATAAGTGGATAACCCTAAGCAGCAAATAGATTTAAAAGAATAAACACGAGTCACCTCTGTGTATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171341036 191 - 171630274 GGCCACACAGTTCTATGGTTTCTGATTATTTTATTTACAACTAGAAAGTGGCTGCATAGCCAGGAATAATACTCTCTTCCATAGTGTGTGGTTCACCTTAGTGGCTCCTGGGACTCCTTAGCAAGAGTAGATGGCTAATCCTAAACAACAAATAACCTTACGTGAATGAACAGGAAGTATCTCTCTGTATG
i calJac3.chr4             I 20947 C 0
s saiBol1.JH378348            163992 188 -    375362 GGCCACCGAGTTCTATGGTTTCCGATTATTGCATTTACAACGAGGGATTGGCTGGA-GGCCAAGAATACTATTTGCTTCCCTTGTGC-TGGTCCATGTTAACGATTGCTGGGACTGCTTAGAAAGGATAGGTGAATAATCCTAAGCAGCAAGTAACCTCAAATGAATGAACACGAATCA-CTCTCCGGATG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      102480 188 -    285216 GGCCACCCAGTTCTACGGTTTCTGATGATTTCATTTACAACTAGAAATTGGCTGGA-GGCCAAGAATACTATTTGCTTCCCTTGTGC-TGGTCCACGTTAACGATTGCTGGGACTTCTCAGAAAGTATAGGTGGATAATCCTAAGCAGCAAATAACCTCAAGTGGATGAACACGAATCA-CCCTCTGGATG
i aotNan1.NW_018494050v1   C 0 C 0
e otoGar3.GL873742           1487421 446 -   2232465 I
e cebCap1.NW_016108108v1      150456 6599 -    373274 I

a score=65100.000000
s hg38.chr6_GL000254v2_alt     77555 11 +   4827813 AGAGAGAAATG---------------------------------
s panTro5.chr6              29048138 11 + 175400573 AGAGAGAAATG---------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29292188 11 + 173848474 AGAGAGAAATG---------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5092225 11 +   6154872 AGAGAGAAATG---------------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74113390 11 + 122973662 AGAGAGAGTTG---------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29274660 11 + 172585720 AGAGATAAATG---------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28923431 11 - 170955103 AGAGATAAATG---------------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1901159 11 -   2996164 AGAGATAAATG---------------------------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1786386 11 -   2157725 AGAGAGAAATG---------------------------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28240671 11 -  71996105 ACAGAAAAATG---------------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1908769 11 +   2316924 AGAGAGAAATG---------------------------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782985 11 -   3067355 ACAGAGAAATG---------------------------------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171341227 11 - 171630274 AGAAAGAGAGG---------------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            164180 11 -    375362 AGGAAGAAATG---------------------------------
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      102668 11 -    285216 AGAGAGAAATG---------------------------------
i aotNan1.NW_018494050v1   C 0 T 10007
s otoGar3.GL873742           1487867 44 -   2232465 AGAGAGAGTAGGAGGGAATTTGAATTTGGATTGAGAAACTAATA
i otoGar3.GL873742         I 446 C 0
e cebCap1.NW_016108108v1      150456 6599 -    373274 I

a score=381714.000000
s hg38.chr6_GL000254v2_alt     77566 77 +   4827813 --CAGAGGCCAACACAATTCACCTTG--AC-AGAC-AGAAA--------AATTT--AAAGTT---GGGGAATA----TCATGGACCGCT--TCTCACTAGTG
s panTro5.chr6              29048149 77 + 175400573 --CAGAGGCCAACACAATTCACCTTG--GC-AGAC-AGAAA--------AATTT--AAAGTT---GGGGAATA----TCATGGACCGCT--TCTTACTAGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29292199 77 + 173848474 --CAGAGGCCAACACAATTCACCTTG--GC-AGAC-AGAAA--------AATTT--AAAGTT---GGGGAATA----TCATGGACCGCT--TCTTACTAGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5092236 77 +   6154872 --CAGAGGCCAACACAATTCACCTTG--AC-ACAC-AGAAA--------AATTT--AAAGTT---GAGGAATG----TCATGGACTGCT--TCTTACTTGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74113401 81 + 122973662 --TAGAGATCAACCCAAAT-ATCTTG--ACAAGGC-AGGAC--------ATTTTGGACAGCTTGGGGGGAAGG----CCATGGAGCTCT--TCTTAC-AGTG
i nomLeu3.chr1a            C 0 T 15528
s rheMac8.chr4              29274671 69 + 172585720 --------TCAACACAATTCACCTTG--AC-AG---AGAAA--------ATTTT--GAAGTT---GGGGAATA----TCATGGACCGCT--TCTTACTGGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28923442 69 - 170955103 --------TCAACACAATTCACCTTG--AC-AG---AGAAA--------ATTTT--GAAGTT---GGGGAATA----TCATGGACCGCT--TCTTACTGGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1901170 69 -   2996164 --------TCAACACAATTCACCTTG--AC-AG---AGAAA--------ATTTT--AAAGTT---GGGGAATA----TCATGGACCGCT--TCTCACTGGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1786397 69 -   2157725 --------TCAACACAATTCACCTTG--AC-AG---AGAAA--------ATTTT--AAAGTT---GGGGAATA----TCATGGACCGCT--TCTTACTGGTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28240682 71 -  71996105 --------CCAACACAATTCACCTTGACAG-AC---AGAAA--------ATTTT--AAAGTT---GGGGAATA----TCGTGGACCGCT--TCTTACTGGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1908780 69 +   2316924 --------TCAACACAATTCACCTTG--AG-AG---AGAAA--------ATTTT--AAAGTT---GGGGAATA----TCATGGACCGCT--TCTTACTGGTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1782996 71 -   3067355 --------CCAACACAATTCACCTTG--AC-AGAC-AGAAA--------ATTTT--AAAGTT---GGGGATTA----TCACGGGCCGCT--TCTTACTAGTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171341238 78 - 171630274 --CAGAGGTCAACACAA-ACATCTTG--AC-AAGGCAGGAA--------ATTTTGGACAGCT---CGGGAAGG----TCATGGAGTGCT--TCTTAC-AGTG
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            164191 75 -    375362 ----GAGGCCAACACAATTCACCTTG--AC-ACAA-AGAAA--------ATTTT--AAAGTT---GGGGAATA----TTATGGACCTCT--TCTTACTGGTG
i saiBol1.JH378348         C 0 I 1
s otoGar3.GL873742           1487911 93 -   2232465 CAGAAAGGCTAACAGAACTCTGCTTG--TC-AA---GGTAGTGTATTGTATTTTGGAGAGCT---GGAGAAAGGAATTTAAAGAGTGCTTCTCTTACAGGCC
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      102679 10007 -    285216 T
e cebCap1.NW_016108108v1      150456 6599 -    373274 I

a score=1887333.000000
s hg38.chr6_GL000254v2_alt     77643 291 +   4827813 CCCGGGGAAG-AAAACAAA-----------ACCtggaggtattggggattgaacccaggacctcgtgcatgctaagcacgcgctctaccgctgagctata-cccccTCTGGAAGACTTGCCTTTTAGAGAATATT----TTGATGACTATTATTGTCTGAGTCTGGGCTCTG---T-GTCATGATAAT--CTTTATGTTTTCAATTCCACTCTC----AATTTCCTACAGGAAGTGTTTCCTCTCTTAGGCCCTGCTACACCAAAAGAAAGGTAGCTTAATAGTACAAATAAAGGCACTGTTCCTGATTTGTGGTCAG
s panTro5.chr6              29048226 291 + 175400573 CCCGGGGAAG-AAAACAAA-----------ACCAggaggtgctgaggattgaacccaggaccttgtgcatgctaagcacgagctctaccgctgagctata-cccccTCTGGGAAACTTGTCTTTCAGAGAATATT----TTGATGACTATTATTGTCTGAGTCTGGGCTCTG---T-GTCATGACAAT--CTTTATGTTTTCAATTCCACTCTC----AATTTCCTACAGGAAGTGTTTCCTCTCTTAGGCCCTGCTACACCAAAAGAAAGGTAGCTTAATAGTACAAATAAAGGCACTGTTCCTGATTTGTGGTCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29292276 291 + 173848474 CCCGGGGAAG-AAAACAAA-----------ACCAggaggtgctgaggattgaacccaggaccttgtgcatgctaagcacgagctctaccgctgagctata-cccccTCTGGAAAACTTGTCTTTCAGAGAATATT----TTGATGACTATTATTGTCTGAGTCTGGGCTCTG---T-GTCATGACAAT--CTTTATGTTTTCAATTCCACTCTC----AATTTCCTACAGGAAGTGTTTCCTCTCTTAGGCCCTGCTACACCAAAAGAAAGGTAGCTTAATAGTACAAATAAAGGCACTGTTCCTGATTTGTGGTCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5092313 291 +   6154872 CCCGGGGAAG-AAAACAAA-----------ACCtggaggtactggggattgaacccaggacctcgtgcatgctaagcacgcgctctaccgctgagctata-cccccTCTGGAGAACTTGTCTTTCAGAGAATATT----TTGATGACTATTATTGTCTGAGTCTGGGCTCTG---T-GTCATGACAAT--CTTTATGTTTTCAATTCCACTCTC----AATTTCCTACAGGAAGTGTTTCCTCTCTTAGACCCTGCTACACCAAAAGAAAGGTAGCTTAATAGTACAAATAAAGGCACTGTTCCTGATTTGTGGTCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74097954 292 + 122973662 CCCGCGGAAG-AAAACAAA-----------ACCtggaggtactggggatcgaacccaggacctcgtgcatgctaagcacgcgctctaccactgagctacacccccCTATGGAAAACTGTGCTTTCAGAGAATACT----TTGATGACTATTATTATCTGAGTCTAGGGTCTG---G-GTCATGACAAT--CTTTATGTTTTCATTTCCACTCTT----AATTTCCTACAGGAAGCGTTTCTTCTCTTAGGCCCCTCCACACCAAAAGAAAGGTAGCTTAACAGTACAAATAAAGGCACTGTTCCTGATTTGTGGTCAG
i nomLeu3.chr1a            T 15528 C 0
s rheMac8.chr4              29274740 289 + 172585720 CCCGGGGGAGAAAAAAAAG-----------ACgtggaggtactgggggttgaacccaggacctcgtgcatgctaagcacgcgctctaccactgagctatg-cccccTCCGCCACGTTTTCTTGTCAGAGAATACT----TTCATGACTATTACTGTCTGAGTCTGGGCTCT------GTCTTGACAAT---TTTATGTTTCCAATTCCACTCTT----AATTTCTTACAAGAAGCGTTTCCTGTCTTAGGGCCCGCTACACCAAAAGAAAGGCAGCTTAACAGTACAAATAAAGGCACTGTTCCTGATTTGTGGTCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28923511 289 - 170955103 CCCGGGGGAGAAAAAAAAG-----------ACgtggaggtactgggggttgaacccaggacctcgtgcatgctaagcacgcgctctaccactgagctata-cccccTCCGCCACGTTTTTTTGTCAGAGAATACT----TTCATGACTATTACTGTCTGAGTCTGGGCTCT------GTCTTGACAAT---TTTATGTTTCCAATTCCACTCTT----AATTTCTTACAAGAAGCGTTTCCTGTCTTAGGGCCCGCTACACCAAAAGAAAGGCAGCTTAACAGTACAAATAAAGGCACTGTTCCTGATTTGTGGTCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1901239 288 -   2996164 CCCGGGGAAG-AAAAGAAG-----------ACgtggaggtactgggggttgaacccaggacctcgtgcatgctaagcacgcgctctaccactgagctata-cccccTCCGCCACGTTTTCTTATCAGAGAATACT----TTCCGGACTATTACTGTCTGAGTCTGGGCTCT------GTCTTGACAAT---TTTATGTTTCCAATTCCACTCTT----AATTTCTTACAAGAAGCGTTTCCTGTCTTAGGGCCCGCTACACCAAAAGAAAGGCAGCTTAACAGTACAAATAAAGGCACTGTTCCTGATTTGTGGTCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1786466 289 -   2157725 TTCGAGGAAG-AAAAGAAA-----------GCgtggaggtactggggattgaacccaggacctcgtgcatgctaagcacgcgctctaccactgagctata-cccccTCCGCAAGTCTTTTTTTTCAGAGAATATT----TTCATGGCTATTACTGTCTGAGTCTGGGCTCT------GTCTTGACAAT--CTTTATGTTTCCAATTCCACTCTT----AATTTCCTACAAGAAGCGTTTCCTGTCTTAGGGCCCGCTACACCAAAAGAAAGGCAGCTTAATAGCACAAATAAAGGCACTGTTCCTGATTTGTGGTCAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28240753 289 -  71996105 CCCGGGGAAG-AAAAGAAA-----------ACCtggaggtactggggattgaacccaggacctcgtgcatgccaagcacgcgctctaccactgagctata-cccccTCCGCGAAATTCCCTTTTCAGGGAATACT----TTCATGACTATTACTGTCTGAGTCTGGGCTCT------GTCTTGACAAT--CTTTATGTTTCCAATTCCACTCTT----AATTTCCTACAGGAAGCGTTTCCTGTCTTAGGACCCGCTACACCAAAAGAAAGGCAGCTTAGTAGTACAAATAAAGGCACTGTTCCTGATTTGTGGTCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1908849 289 +   2316924 TTCGGGGAAG-AAAAGAAA-----------GCgtggaggtactggggattgaacccaggacctcgtgcatgctaagcacgcgctctaccactgagctata-cccccTCCGTAAGTCTTTTTTTTCAGAGAATATT----TTCATGGCTATTACTGTCTGAGTCTGGGCTCT------GTCTTGGCAAT--CTTTATGTTTCCAATTCTACTCTT----AATTTCCTACAAGAAGCGTTTCCTGTCTTAGGGCCCGCTACACCAAAAGAAAGGCAGCTTAATAGTACAAATAAAGGCACTGTTCCTGATTTGTGGTCAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1783067 289 -   3067355 CCCCGGGAAG-AAAAGAAA-----------ACCtggaggtactggggattgaacccaggacctcgtgcatgctaagcacgcgctctaccactgagctaca-cccccTCCACGAAGCTATTGTTTCAGAGAATACT----TTCATGACTATTACAGTCTGAGTCTGGGCTCT------GTCTTGACAAT--CTTCATGTTTCTAATTCCACTCTT----AATTTCCTACAGGAAGCGTTTCCTGTCTTAGGACCCGCTACACCAAAAGAAAGGCAGCTTAATAGTACAAATAAAGGCACTGTTCCTGATTTGTGGTCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171341317 297 - 171630274 CTTGGGGAAG-AAAATGGACC-------TCtggaggaggtactgggaattgaacccaagacttcatgcatgctaagtacatgctctatcactgggctata-tccccTCACAACTCCTGTGTATTTGGAAAGCT--------GGTGACTGCCATTATCTGAGTATGCTCTATG---TCGTAAAGACAATTATCATGTGTGTTCATTTCTACTGTTTATGATTTCCCTATATCTAAGTGCTCCTGTCTTAGGCACAGTTACATCACAA-AAAGATACCCCAATGGTAAAAAGAAAAGCGCTGTTACTGATTTGGGATCAG
i calJac3.chr4             I 1 T 17771
s saiBol1.JH378348            164267 286 -    375362 CCCGGGGAAG-AAAACAA------------CAAtggaggtactggggattgaacccaggacctcatacatgctaagcatgcgctctaccactgagctaca-cccccTTGGGAAATGCGTGCCTTCTGAAAACC---------TTGTCCACTATTGTCTGAGTCTGTGCTTTG---T-GTCAGGACAATCACTGTGTGTTCCCAGTTCCACTGTT----AATTCCCTACATGCAGCTGC-CCTCTTGTAGACACTCCGACATCAAAAGAAAAGTGGCTTCGTGGTAAAAAGAAAGGCACTGATCCTGATTTGTGGTCAG
i saiBol1.JH378348         I 1 C 0
s otoGar3.GL873742           1488004 283 -   2232465 TTTGTGAAGG-AAGATGAAGAAAATAGGTCAATtggaggtactggggattgaacccaggacctcgtgcatgctaagcacgcgctctaccactgagctata-cccccTCTTTGAGAAGTATCTTTCAAGAAACCCTTTGATTGATGACCACCATTATCTAAGCCTAAATTCAGAGTT-CTCCGGACAGT---TTCCTGTTTTGAATTCAATTGTTTATAAATTCCCTACACTA--TGCTCTCTGTCTTATGCACAACTACACGAGAA---------------------------GGCACTGTTCTTGATTTGAGGTCAT
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      102679 10007 -    285216 T
e cebCap1.NW_016108108v1      150456 6599 -    373274 I

a score=814406.000000
s hg38.chr6_GL000254v2_alt     77934 118 +   4827813 TCCAAGATCAACTCACCCCACGGTGGGCTCCCCATC-GCGTTAGATTTCCTGGAGCATACTTGCA-TTCAATCATTTGAGTGTGTCCTGGCATACAACATTCTCTTGCAAAttttctgat---------------
s panTro5.chr6              29048517 118 + 175400573 TCCAAGATCAACTCACCCCAAGGTGGGCTTCCCATC-GCGTTAGATTTCCTGGAGCATACTTGCA-TTCAATCATTTGAGTGTGTCCTGGCATACAACATTCTCTTGCAAAttttctgat---------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29292567 118 + 173848474 TCCAAGATCAACTCACCCCAAGGTGGGCTTCCCATC-GCGTTAGATTTCCTGGAGCATACTTGCA-TTCAATCATTTGAGTGTGTCCTGGCATACAACATTCTCTTGCAAAttttctgat---------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5092604 118 +   6154872 TCCAAGATCAACTCACCCCAAGGTGGGCTCCCCATT-GCGTTAGATTTCCTGGAGCATACTTGCA-TTCAATCATTTGAGTGTGTCCTGGCATACAACATTCTCTTGCAAAttttctgat---------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74098246 118 + 122973662 TCCAAGATCAACTCACCCCAAGGTGGGCTCCCCATC-GCGTTAGATTTCCTGGAGCATACTTCCA-TTCAATCATTTGAGTGTGTCCTGGCATACAACATTCTCTTGCAAAttttctgat---------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29275029 118 + 172585720 CCCAAGATCAACTCACCCCAAGGTGGTCTCCCCATC-GCGTTAGATTTCCTGGAGCATACTTCCA-TTCAGTTATTTGAGTGTGTCCTGGCATACAACATTCTCTTGCAAAttttctgat---------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28923800 118 - 170955103 CCCAAGATCAACTCACCCCAAGGTGGTCTCCCCATC-GCGTTAGATTTCCTGGAGCATACTTCCA-TTCAGTTATTTGAGTGTGTCCTGGCATACAACATTCTCTTGCAAAttttctgat---------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1901527 118 -   2996164 CCCAAGATCAACTCACCCCAAGGTGGTCTCCCCATC-GCGTTAGATTTCCTGGAGCATACTTCCA-TTCAGTTATTTGAGTGTGTCCTGGCATACAACATTCTCTTGCAAAttttctgat---------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1786755 118 -   2157725 CCCAAGATCAACTCACCCCAAGGTGGTCTCCCCATC-GAGTTAGATTTCCTGGAGCATACCTCCA-TTCAGTTATTTGAGTGTGTCCTGGCATACAACATTCTCTTGCAAATTTTCTGAT---------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28241042 118 -  71996105 CCCAAGATCAACTCACCCTAAGGTGGGCTCCTCATC-GCGTCAGATTTCCTGGAGCATACTTCCA-TTCAGTCATTTGAGTGTGTCCTGGCATACAATATTCTCTTGCAAATTTTCTGAT---------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1909138 118 +   2316924 CCCAAGATCAACTCACCCCAAGGTGGTCTCCCCATC-GCGTTAGATTTCCTGGAGCACACTTCCA-TTCAGTTATTTGAGTGTGTCCTGGCATACAACATTCTCTTGCAAATTTTCTGAT---------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1783356 118 -   3067355 CCCAAGATCAACTCACCCCAAGGTGGGCTCCCCATT-GCCTTAGATTTCCTGGAGC-TACTTCCATTTCAGTCATTTGAGTGTGTCCTGGCATACAACATTCTCTTGCAAAttttctgat---------------
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            164553 115 -    375362 CCCAAGATCAATTCACTGCAACCTCGGCTCCCCATCAATGTTAGACTTCCTG----ATACTTCCA-TTCTATCATTCGAGTGTGTCCCAGCAAACAACATTCTCTTGCCAATTTTCTGAT---------------
i saiBol1.JH378348         C 0 T 10722
s otoGar3.GL873742           1488287 120 -   2232465 CTCACTATCAATCCGCC-------------TCCGTT-GTATTAGATCGCCTGGAGCATGCTTCCA-TTCTCTCACTTGAGTGCGTCCTGTCATACAACATTCTCTTTTAACTTTTCTTTTTGCAactttgcttag
i otoGar3.GL873742         C 0 C 0
e aotNan1.NW_018494050v1      102679 10007 -    285216 T
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171341614 17771 - 171630274 T

a score=947285.000000
s hg38.chr6_GL000254v2_alt     78052 176 +   4827813 tataatgttctgtattcttttgactcttggaagcgtgttagtctcacatggtcaaaaaataaaactgactcaagtgtgtgtgaaaataccctaaaattcaacacaaatagaggcaaattaaaactgcattgtgaaagaataacataaccccatt-------gaaataactgatttaagaaaat
s panTro5.chr6              29048635 176 + 175400573 tataatgttctgtattcttttgactcttggaagcgtgttaatctcacatggtcaaaaaataaaactgactcaagtgtgtgtgaaaataccctaaaattcaacacaaatagaggcaaattaaaactgcattgtgaaagaataacataaccccatt-------gaaataactgatttaagaaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29292685 176 + 173848474 tataatgttctgtattcttttgactcttggaagcgtgttagtctcacatggtcaaaaaataaaactgactcaagtgtgtgtgaaaataccctaaaattcaacacaaatagaggcaaattaaaactgcattgtgaaagaataacataaccccatt-------gaaataactgatttaagaaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5092722 174 +   6154872 tataatgttctgtattcttttgactcttggaagcgtgttagtctcacgtggtcaaaaaataaaactgactc--gtgtgtgtgaaaataccctaaaattcaacacaaatagaggcaaattaaacctgcattgtgaaagaataacataaccccatt-------gaaataactgatttaagaaaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74098364 176 + 122973662 tataatgttctgtattcttttgactcttggaagcatgttagtctcacatagtcaaaaaataaaactgactcaagtgtgtgtgaaaatatcctaaaattcagtacaaatagaggcaacttaaaactgcattgtgaaagaataacataatcccatt-------gaaATAACTGATTTAAGAAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29275147 175 + 172585720 tataatattctgtattcttttgactcttggaagcatgttagtctcacatagtcataaaataaaactgactcaagtgcgtgtgaaaacaccctaaaattcaatacaaatagacgcaaattaaaactgcattgtgaaacaat-acattatcccatt-------gaaataactgatttaagaaaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28923918 175 - 170955103 tataatattctgtattcttttgactcttggaagcatgttagtctcacatagtcataaaataaaactgactcaagtgcgtgtgaaaacaccctaaaattcaatacaaatagacgcaaattaaaactgcattgtgaaacaat-acattaccccatt-------gaaataactgatttaagaaaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1901645 175 -   2996164 tataatattctgtattcttttgactcttggaagcatgttagtttcacatagtcataaaataaaactgactcaagtgtgtgtgaaaacaccctaaaattcaatacaaatagacgcaaattaaaactgcattgtgaaacaat-acattaccccatt-------gaaataactgatttaagaaaac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1786873 129 -   2157725 TATAATATTCTGTATTCTTTTGACTCTTGGAAGCATGTTAGTCTCACATAGTC-----------------------------------------------atacaaatagacgcaaattaaaactgcattgtgaaacaataacattaccccatt-------gaaataactgatttaagaagac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28241160 176 -  71996105 TACAATATTCCGTGTTCttttgactcttggaagcatgttagtctcacatagtcaaaaaataaaactgactcaagtgtgtgtgaaaataccctaaaattcaatacaaatagacgcaaattaaaactgcattgtgaaacaataatgtaaccccatt-------gaaataactgatttaagaaaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1909256 129 +   2316924 TATAATATTCTGTATTCTTTTGACTCTTGGAAGCATGTTAGTCTCACATAGTC-----------------------------------------------ATACAAATAGACGCAAATTAAAACTGCATTGTGAAACAATAACATTACCCCATT-------GAAATAACTGATTTAAGAAGAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1783474 176 -   3067355 tataatattccgtattcttttgactcttggaagcatgttagtctcacatagtcaaaaaataaaactgactcaagtgtgtgtgaaaataccctaaaattcaatacaaatagacgcaaattaaaactgcattgcgaaacaataacataaccccatt-------gaaATAACTGATTTAAGAAAAT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1488407 174 -   2232465 tataactttctgcattcttttaactcttggaaac-------ttttacatggtcaaaaaataaaactgacacaagtttgtgtgaaaataacctatacttcaatacaaatataaacaagtcta--ctgcgtttcaaaagaatgatataatgacaataaagaacaaaagaactgatctaagaaaat
i otoGar3.GL873742         C 0 I 183
e saiBol1.JH378348            164668 10722 -    375362 T
e aotNan1.NW_018494050v1      102679 10007 -    285216 T
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171341614 17771 - 171630274 T

a score=1235293.000000
s hg38.chr6_GL000254v2_alt     78228 209 +   4827813 gcttgacaaagttcg-----------------------------------------------------------------------ttgttctaattgtaagtacaaaaagaagaggaaacaaatcttaaactctatgtatgaggg------ttttttttttagagctaaggctgcaggaattctgagattttgtgtgaattttaggattgggaaaatg-------------------agtgtgtgtgagcgcgtgtgttgttggaaacaggctgtcactgta---agagaaagcaggtaaagaatag
s panTro5.chr6              29048811 212 + 175400573 gcttgacaaagttcg-----------------------------------------------------------------------ttgttctaattgtaagtacaaaaagaagaggaaataaatcttaaactctatgtatgagggg---ttttttttttttagagctaaggctgcaggaattctgagattttgtgtgaattttaggattgggaaaatg-------------------agtgtgtgtgagcgcgtgtgttgttggaaacaggctgtcactgta---agagaaagaaggtaaagaatag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29292861 215 + 173848474 gcttgacaaagttcg-----------------------------------------------------------------------ttgttctaattgtaagtacaaaaagaagaggaaataaatcttaaactctatgtatgaggggtttttttttttttttagagctaaggctgcaggaattctgagattttgtgtgaattttaggattgggaaaatg-------------------agtgtgtgtgagcgcgtgtgttgttggaaacaggctgtcactgta---agagaaagaaggtaaagaatag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5092896 210 +   6154872 gcttgacaaagttcg-----------------------------------------------------------------------ttgttctaattgtaagtacaaaaagaagaggaaacaaatcttaaactctatgtatgaggg-----tttttttttttagagctaaggctgcaggaattctgagattttgtgtgaattttaggattgggaaaatg-------------------agtgtgtgtgagcgcgtgtgttgttggaaacaggttgtcactgta---agagaaagaaggtaaagaatag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74098540 210 + 122973662 GCTTTACACAGTTCG-----------------------------------------------------------------------TTGTTCTAATTGTAAGTACAGAAAGAAGAGAAAACAAATCTTAAACGCTATGTATGAGGG-----TTATTTTTTGTAGAGCTAAGGCTGTAGGAATTCTGAGATTTTGTGTGAATTTTAGGATTGGGAAAATG-------------------AGTGTGTGTGAGCGGGTGTGTTGTTGGAACCAGGCTGTCACTGTA---AGAGAAAGAAGGTAAAGAATAG
i nomLeu3.chr1a            C 0 M 4089
s rheMac8.chr4              29275322 207 + 172585720 gctttacacagttcg-----------------------------------------------------------------------ttatt-taattgtaagcacaaaaagaagaggaaagaaatcttaaactctatgtatgaggg-----ttattttttgtagagctaaagctgtaggaattctgagattttgtgtgaattttaggattgggaaaatg-------------------agtgtgtgaga--gtgtgtgttgttggaaacaggctgtcactgta---agaaaaagaaggtaaagaacag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28924093 207 - 170955103 gctttacacagttcg-----------------------------------------------------------------------ttatt-taattgtaagcacaaaaagaagaggaaagaaatcttaaactctatgtatgaggg-----ttattttttgtagagctaaagctgtaggaattctgagattttgtgtgaattttaggattgggaaaatg-------------------agtgtgtgaga--gtgtgtgttgttggaaacaggctgtcactgta---agaaaaagaaggtaaagaacag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1901820 207 -   2996164 gctttacacagttcg-----------------------------------------------------------------------ttatt-taattgtaagcacaaaaagaagaggaaagaaatcttaaactctatgtatgaggg-----ttattttttgtagagctaaagctgtaggaattctgagattttgtgtgaattttaggattgggaaaatg-------------------agtgtgtgaga--gtgtgtgttgttggaaacaggctgtcactgta---agaaaaagaaggtaaagaatag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1787002 209 -   2157725 actttacacagttcg-----------------------------------------------------------------------ttgtt-taattgtaagcacaaaaagaagaggaaagaaatcttaaactctatgtatgaggg-----ttattttttgtagagctaaagctgtaggaattctgagattttatgtgaattttaggattgggaaaatg-------------------agtgtgtgagagtgtgtgtgttgttggaaacagactgtcactgta---agaaaaagaaggtaatgaatag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28241336 209 -  71996105 gctttacacagttcg-----------------------------------------------------------------------ttgtt-taattgtaagcacaaaaagaagaggaaagaaatcttaaactctatgtatgaggg-----ttattttttgtagagctaaagctgtaggaattctgagattttgtgtgaattttaggattgggaaaatg-------------------agtgtgtgagagtgtgtgtgttgttggaaccaggctgtcactgta---agaaaaagaaggtaaagaatag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1909385 209 +   2316924 ACTTTACACAGTTCG-----------------------------------------------------------------------TTGTT-TAATTGtaagcacaaaaagaagaggaaagaaatcttaaactctgtgtatgaggg-----ttattttttgcagagctaaagctgtaggaattctgagattttgtgtgaattttaggattgggaaaatg-------------------agtgtgtgagagtgtgtgtgttgttggaaacaggctgtcactgta---agaaaaagaaggtaaagaatag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1783650 209 -   3067355 GTTTTACACAGTTCG-----------------------------------------------------------------------TTGTT-TAATTGtaagcacaaaaagaagaggaaagaaatcttaaattctatgtatgaggg-----ttattttttgtagagctaaagctgtaggaattctgagattttgtgtgaattttaggactgggaaaatg-------------------agtgtgtgagagtgtgtgtgttgttggaaccaggttgtcactgta---agaaaaagaaggtaaagaatag
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1488764 302 -   2232465 gtttggccagggtcgggtttgaaccactagccttggcatatggggccggcgcccagtactcactgagccacaggcactgtcctactttgttctaattttaaagacaaaaagaatagttaacaaatcttaaactctaggtagcagga-----ttattttttgtaatgctaaggttgtaacaa-tctgatactttgtgtgaattttaagaatgggaaaatgtgcatttgtgtagtgtgaaaatgagtatgtgtgtatgtgttgttggaaccaggctgtcactgtggacaaagagggaaggtaaagaatag
i otoGar3.GL873742         I 183 C 0
e saiBol1.JH378348            164668 10722 -    375362 T
e aotNan1.NW_018494050v1      102679 10007 -    285216 T
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171341614 17771 - 171630274 T

a score=259345.000000
s hg38.chr6_GL000254v2_alt     78437 60 +   4827813 tcctgttggtgttg-atgggaa-ttggaggcatcagtatgaaattatacatatgtaattgta
s panTro5.chr6              29049023 60 + 175400573 tcctgttggtgttg-acgggaa-ttggaggcatcagtatgaaattatacatatgtaattgta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29293076 60 + 173848474 tcctgttggtgttg-atgggaa-ttggaggcatcagtatgaaattatacatatgtaattgta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5093106 60 +   6154872 tcctgttggtgtta-atgggaa-ttggaggcatcagtatgaaattatacgtatgtaattgta
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29275529 50 + 172585720 tcctgttggtgttg-atgggaa-ttggaggcatcagtatgaaattatacata----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28924300 50 - 170955103 tcctgttggtgttg-atgggaa-ttggaggcatcagtatgaaattatacata----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1902027 50 -   2996164 tcctgttggtgttg-atgggaa-ttggaggcatcagtatgaaattatacata----------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1787211 50 -   2157725 tcctgttggtgttg-atgggaa-ttggaggcattagtatgaaattatacata----------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28241545 50 -  71996105 tcctgttggtgtta-atgggaa-ttggaggcatcagtatgaaattatacata----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1909594 50 +   2316924 tcctgttggtgttg-atgggaa-ttggaggcattagtatgaaattatacata----------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1783859 50 -   3067355 tcctgttggagttg-atgggaa-ttggaggcatcagtatgaaattatacata----------
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1489066 60 -   2232465 tcctgttagtgctgcacgggaatttagatgctttggtatgaaattatatatg--taattgta
i otoGar3.GL873742         C 0 T 11973
e saiBol1.JH378348            164668 10722 -    375362 T
e aotNan1.NW_018494050v1      102679 10007 -    285216 T
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171341614 17771 - 171630274 T
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=5324811.000000
s hg38.chr6_GL000254v2_alt     78497 1150 +   4827813 taggccgggcgcggtggctcacgcttgtagtctcagcactttgggaggttgagacgtgtggatcgc----ttcaggtcagaaatcgagaacagcctggccaacatggcaaaacgccgtttctcctaaaaatacaaaaatttgacgggtgtggtggccgcccctgtagtcccagctattcgggaggctgaggcaggataatcgcttgaattcgggaggcggacgttgcagcg-agccaagatcgcaccaccgcactccagcctgggcgac----taagactctgtctcaaaaa---------a--------taaaaatagtacattttccctacagatctgtctgctaactgagcctggaagaaataccttagaaacaatgagcaagatgactctatattttgattttcaaataccattctctactaaaaggaaccagagatactaatagaaagtagctactagtgtcaactacactgactccaggactgtgccagggaaactacaagatgaacctaaaatatcttgctgtgccagaatgatggggatgatttaaaagaacacagaagcTCcggggtggctcacgcctgtaaacccagcactttgggagaccgaggcgggcggatcaccagaggttaggagttccagacccgcctggccaacatggtgaagtcccgtctctactaaaaatacaaaaaatggcctggcatggtggctcatgcctctaatcccaactacttgggaagcagaggtaggagaatcgcatgaacccgggaggcggaggttgcagtgagccgagatcgcaccactgcac----tccagcctggacgacagggcaagacctgtctcaataaataaataaataataaaGTACATGAGAAAAATAATA--GTGTGTGTGTGTGTTTAGCCGTAAAGAGAGAGGAGAATCATtgtggcaaaatatcgggaattggtaaatatgagtaacttgtgtgtggcagttctttgtatcatttttgcaacttttctgtaggtttgaaataatttcaaactaaaaaggtttttctaaaTTCTCCCTTCTCAAATTTCTTTTCCCTCTTCCTTCAAGGGCTGTACTCTTCTATCAAGAG-TAACGTAGATGGATACTAAAACAGAAGGGTCAGTACCGTCTCGGGGGATTTAGGTGCAGGTGAGGAGGTGAG
s panTro5.chr6              29049083 1150 + 175400573 taggccgggcgcggtggctcacgcttgtagtctcagcactttgggaggttgagacgtatggatcgc----ttcaggtcagaaatcgagaacagcctggccaacatggcaaaacgccgtttctcctaaaaatacaaaaatttgacgggtgtggtggccgcccctgtagtcccagctattcgggaggctgaggcaggataatcgcttgaattcaggaggcggacgttgcagcg-agccaagatcgcaccaccgcactccagcctgggcgac----taagactctgtctcaaaaa---------a--------taaaaatagtacatttcccctacagatctgtctgctaactgagcctggaagaaataccttagaaacaatgagcaagatgactctatattttgattttcaaataccattctctactaaaaggaaccagagatactaatagaaagtagctactagtgtcaactacactgactccaggactgtgccagggaaactacaagatgaacctaaaatatcttgctgtgccagaatgatggggatgatttaaaagaacacagaagcTCcggggtgcctcacgcctgtaaacccagcactttgggagaccgaggcgggcggatcaccagaggttaggagttccagacccgcctggccaacatggtgaagtcccgtctctactaaaaatacaaaaactggcctggcatggtggctcatgcctctaatcccaactacttgggaagcagaggtaggagaatcgcttgaacgcgggaggcggaggttgcagtgagccgagatcgcaccactgcac----tccagcctggacgacagggcaagacctgtctcaataaataaataaataataaaGTACATGAGAAAAATAATA--GTGTGTGTGTGTGTTTAGCCGTAAAGAGAGAGGAGAATCATtgtggcaaaatatcgggaattggtaaatatgagtaacttgtgtgtggcagttctttgtatcatttttgcaacttttctgtaggtttgaaataatttcaaactaaaaaggtttttctaaaTTCTCCCTTCTCAAATTTCTTTTCCCTCTTCCTTCAAGGGCTGTACTCTTCTATCAAGAG-TAACGTAGATGGATACTAAAACAGAAGGGTCAGTACCGTCTCGGGGGATTTAGGTGCAGGTGAGGAGGTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29293136 1150 + 173848474 taggccgggcgcggtggctcacgcttgtagtctcagcactttgggaggttgagacgtatggatcgc----ttcaggtcagaaatcgagaacagcctggccaacatggcaaaacgccgtttctcctaaaaatacaaaaatttgacgggtgtggtggccgcccctgtagtcccagctattcgggaggctgaggcaggataatcgcttgaattcaggaggcggacgttgcagcg-agccaagatcgcaccaccgcactccagcctgggcgac----taagactctgtctcaaaaa---------a--------taaaaatagtacatttcccctacagatctgtctgctaactgagcctggaagaaataccttagaaacaatgagcaagatgactctatattttgattttcaaataccattctctaataaaaggaaccagagatactaatagaaagtagctactagtgtcaactacactgactccaggactgtgccagggaaactacaagatgaacctaaaatatcttgctgtgccagaatgatggggatgatttaaaagaacacagaagcTCcggggtggctcacgcctgtaaacccagcactttgggagaccgaggcgggcggatcaccagaggttaggagttccagacccgcctggccaacatagtgaagtcccgtctctactaaaaatacaaaaactggcctggcatggtggctcatgcctctaatcccaactacttgggaagcagaggtaggagaatcgcttgaacgcgggaggcggaggttgcagtgagccgagatcgcaccactgcac----tccagcctggacgacagggcaagacctgtctcaataaataaataaataataaaGTACATGAGAAAAATAATA--GTGTGTGTGTGTGTTTAGCCGTAAAGAGAGAGGAGAATCATtgtggcaaaatatcgggaattggtaaatatgagtaacttgtgtgtggcagttctttgtatcatttttgcaacttttctgtaggtttgaaataatttcaaactaaaaaggtttttctaaaTTCTCCCTTCTCAAATTTCTTTTCCCTCTTCCTTCAAGGGCTGTACTCTTCTATCAAGAG-TAACGTAGATGGATACTAAAACAGAAGGGTCAGTACCGTCTCGGGGGATTTAGGTGCAGGTGAGGAGGTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5093166 1152 +   6154872 taggccgggcgcggtggctcacgcttgtagtctcagtactttgggaggttgagacgtgtgggtcgc----ttcaggtcagaaatcgagaacagcccggccaacatggcaaaacgccgtttctgctaaaaatacaaaaatttgacgggtgtggtggccgcgcctgtagtcccagctattcgggtggctgaggcaggataatcgcttgaattcgggaggcggacgttgcagcg-agccaagatcgtaccaccgcactccagcctgggcgac----taagactctgtctcaaaaa---------a--------taaaaatagtacattttccctacagatctgtctgctaactgagcctggaagaaataccttagaaacaatgagcaagatgagtctatattttgattttcaaataccattctctactaaaaggaaccagagatattaatagaaagcagctactagtgtcaactacactgactccaggactgtgccagggaaactacaagatgaacctaaaatatcttgctgtgccagaatgatggggatgatttaaaagaacacagaagcTCcggggtggctcacgcctgtaaacccagcactttgggagaccgaggcggacggatcaccagagtttaggagttccagacccgcctggccaacatggtgaagtcccgtctctactaaaaatacaaaaactggcctggcatggtggctcatgcctctaatcccaactactcgggaagcagaggtaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcaccactgcac----tccagcctggacgacagggcaagacctgtctcaataaataaataaataacaaaGTACATGAGAAAAATAATAGTGTGTGTGTGTGTGTTTAGCCGTAAAGAGAGAGGAGAATCATtgtggcaaaatatcgggaattgctaaatatgagtaacttgtgtgtggcagttctttgtatcatttttgcaacttttctgtaggtttgaaataatttcaaactaaaaaggtttttctaaaTTCTCCCTTCTCAAATTTCTTTTCCCTCTTCCTTCAAGGGCTGTACTCTTCTATCGAGAG-TAACGTAGATGGATGCTAAAACAGAAGGGTCAGTACCGTCTCGGGGGATTTAGGTGCAGGTGAGGAGGTGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29275579 1153 + 172585720 ---gccgggcgcagtggctcgcgctagtaatctcaacacttcgggaggctgagacgtgtggatcacttctttcaggtcagaaatcgagaacagcctggccaacatggcaaaaccccgtatctactaaaaatacaaaactttgccgggtgtgggggccgcacctgtagtcccagctattcgggaggctgaggcaggataatcgcttgaatttgggaggaggacgttgcagcgtagccaagatcgcgccactgcact-cagcctgggcgactgagtgagactctgtctcaagaaaaaaaag--a--------aaaaaaaagcacattttccctacagatctgtctgctaactgggcctggaagaaatacctgagaaacaatgagcaagataactctatattttgattttcaaataccattctctactaaaaggaaccagagatactaatagaaagtagctactattgtcaactacactgattccaggactgtgccaggaaaactacaagatgaacc-----tatcttgctgtgccagaatgatggggatgatttaaaagaatacagaagcGCAGGggtagctcgcgcctgtaaccccagcacttcgggagaccgaggcgggcagatcaccagaggttaggagttccagaaccacctggccaacatggtgaagctccgtctctattaaaaatacaaaaactggcctggagtggtggtgcatgcctctaatcccagctacttgggaagcagagataggagaatcgcttgaaccc-ggaggcagaggttgcagtgagccgagatcgcaccactgcgc----tccagcctggacaagagggcaagacctgtctcaataaataaataaa-aataaaGTCCATGAGAAAAATAATA--GTGTGTGTATGTATTTAGGCGTAA--AGAGAGGAGAATCATtgtggcaaaatatcgggaattgctaaatccgagtaacgtgtgtatggtagttctttgtattagttttgcaacttttctgtaggtttgaaataatttcaca-caaaaagcttttttttaaTTATCCCTTCTCAAATTTCTTTTCCCTCTTCCTTCAAGGGCTGCACTCTTCTATCAAGAGTTAACGTAGGTGGATACTAAAACAGAAGGGTCAGTACCGCCTCCGGGGATTTAGGTGAAGGCGAGGAGGTGAG
i rheMac8.chr4             C 0 I 321
s macFas5.chr4              28924350 1152 - 170955103 ---gccgggcgcagtggctcgcgctagtaatctcaacacttcgggaggctgagacgtgtggatcacttctttcaggtcagaaatcgagaacatcctggccaacatggcaaaaccccgtatctactaaaaatacaaaactttgccgggtgtgggggccgcacctgtagtcccagctattcgggaggctgaggcaggataatcgcttgaatttgggaggaggacgttgcagcg-agccaagatcgcgccactgcact-cagcctgggcgactgagtgagactctgtctcaagaaaaaaaag--a--------aaaaaaaagcacattttccctacagatctgtctgctaactgggcctggaagaaatacctgagaaacaatgagcaagataactctatattttgattttcaaataccattctctactaaaaggaaccagagatactaatagaaagtagctactattgtcaactacactgattccaggactgtgccaggaaaactacaagatgaacc-----tatcttgctgtgccagaatgatggggatgatttaaaagaatacagaagcGCAGGggtagctcgcgcctgtaaccccagcacttcgggagaccgaggcgggcagatcaccagaggttaggagttccagaaccacctggccaacatggtgaagctccgtctctattaaaaatacaaaaactggcctggagtggtggtgcatgcctctaatcccagctacttgggaagcagagataggagaatcgcttgaaccc-ggaggcagaggttgcagtgagccgagatcgcaccactgcgc----tccagcctggacaagagggcaagacctgtctcaataaataaataaa-aataaaGTCCATGAGAAAAATAATA--GTGTGTGTATGTATTTAGGCGTAA--AGAGAGGAGAATCATtgtggcaaaatatcgggaattgctaaatccgagtaacgtgtgtatggtagttctttgtattagttttgcaacttttctgtaggtttgaaataatttcaca-caaaaagcttttttttaaTTATCCCTTCTCAAATTTCTTTTCCCTCTTCCTTCAAGGGCTGCACTCTTCTATCAAGAGTTAACGTAGGTGGATACTAAAACAGAAGGGTCAGTACCGCCTCCGGGGATTTAGGTGAAGGCGAGGAGGTGAG
i macFas5.chr4             C 0 I 321
s macNem1.NW_012011356v1     1902077 1157 -   2996164 ---gccgggcgcagtggctcgcgctagtaatctcaacacttcgggaggctgagacgtgtggatcacttctttcaggtcagaaatcgagaacagcctggccaacatggcaaaaccccgtatctactaaaaatacaaaactttgccgggtgtgggggccgcgcctgtagtcccagctattcgggaggctgaggcaggataatcgcttgaatttgggaggaggacgttgcagcg-agccaagatcgcgccactgcact-cagcctgggcgactgagtgagactctgtctcaagaaaaaaaag--a--------aaaaaaaagcacattttccctacagatctgtctgctaactgggcctggaagaaatacctgagaaacaatgagcaagataactctatattttgattttcaaataccattctctactaaaaggaaccagagatactaatagaaagtagctactatagtcaactacactgattccaggactgtgccaggaaaactacaagatgaacctaagatatcttgctgtgccagaatgatggggatgatttaaaagaatacagaagcGCAGGggtagctcgcgcctgtaaccccagcacttcgggagaccgaggcgggcagatcaccagaggttaggagttccagaaccacctggccaacatggtgaagctccgtctctattaaaaatacaaaaactggcctggagtggtggtgcatgcctctaatcccagctacttgggaagcagagataggagaatcgcttgaacct-ggaggcagaggttgcagtgagccgagatcgcaccactgcgc----tccagcctggacaagagggcaagacctgtctcaataaataaataaa-aataaaGTCCATGAGAAAAATAATA--GTGTGTGTATGCATTTAGGCGTAA--AGAGAGGAGAATCATtgtggcaaaatattgggaattgctaaatctgagtaacgtgtgtatggtagttctttgtattagttttgcaacttttctgtaggtttgaaataatttcaca-caaaaagctttttttaaaTTATCCCTTCTCAAATTTCTTTTCCCTCTTCCTTCAAGGGCTGCACTCTTCTATCAAGAGTTAACGTAGGTGGATACTAAAACAGAAGGGTCAGTACCGCCTCCGGGGATTTAGGTGCAGGCGAGGAGGTGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1787261 1158 -   2157725 ---gctgggctcagtggctcgcgctagtaatctcaacacttcaggaggctgagacgtgtggatcacttctttcaggtcagaaatcgagaacagcctggccagcatggcaaaaccccgtatctactaaaaatacaaaactttgccgggtgtgggggccgcgcctgtagttccagctattcgggaggctgaggcaggataatcgcttgaattcgggaggaggacgttgcagcg-agccaagatcgcgccactgcact-cagcctgggcgactgagtgaga--ctgtctcaagaaaaaaaagaaa--------aaaaaaaagtacattttccctacagatctgtctgctaactgggcctggaagaaatacctgagaaacaatgagcaagataactctatattttgattttcaaataccattctctactaaaaggaaccagagatactaatcgaaaatagctactattgtcaactacactgattccaggactgtgccaggaaaactacaagatgaacctaagatatcttgctgtgccagaatgatggggatgatttaaaagaatacagaagcGCAGGggtagctcgcgcctgtaatcccagcactttgggagaccgaggcgggcagatcaccagaggttaggagttccagaaccacctggccaacatggtgaagctccgtctctattaaaaatgcaaaaactggcctggcgtggtggtgcatgtctctaatcccagctacttgggaagcagagataggagaatcgcttgaaccc-agaggcagaggttgcagtgagccgagatcgcaccactgcgc----tccagcctggacaagagggcaagacctgtctcaataaataaataaa-aataaaaTCCATGAGAAAAATAATA--GTGTGTGTATGTATTTAGGCGTAA--AGAGAGGAGAATCATtgtggcaaaatatcgggaattgctaaatctgagtaacgtgtgtatggtagttctttgtattagttttgcaacttttctgtaggtttgaaataatttcaaaccaaaaagcttttttttaaTTATCTCTTCTCAAATTTCTTTTCCCTCTTCCTTCAAGGGCTGCACTCTTCTATCAAGAGTTAACGTAGGTGGGTACTAAAACAGAAGGGTCAGTACCGCCTCCGGGGATTTAGGTGCAGGCGAGGAGGTGAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28241595 1160 -  71996105 ---gccgggtgcagtgactcgcgctagtaatctcaacacttcgggaggctgagacgtgtggatcacttctttcaggtcagaaatcgagaacagcctggccaacatggcaaaaccccgtatctactaaaaagacaaaactttgccgggtgtgggggccgcgcctgtagtcccagctattcgggaggctgaggcaggataatcgcttgaattcgggagaaggacgttgcagcg-agccaagatcgcgcccctgcacc-cagcctgggcgactgagtgagactctgtctcaagagaaaaaag--aaaaaagggaaaaaaaagtacattttccctacagatctgtctgctaactgggcctggaagaaatacctgagaaacaatgagcaagataactctatattttgattttcaaataccgttctctactaaaaggaaccagagatactaatagaaagtagctaccattgtcaactacactgattccaggactgtgccaggaaaactacaagatgaacctaagatatcttgctgtgccagaatgatggggatgatttaaaagaacacagaagcGCAGGgatagctcgcacctgtaatcccagcacttcgggagaccgaggcggg--------cagaggttaggagttccagaaccacctggccaacatggtgaagctccgtctttattaaaaatacaaaaactggcctggcgtggtggtgcatgcctctaatcccggctacttgggaagcagagataggagaatcgcttgaaccc-ggaggcagagattgcagtgagccgagatcgcaccactgcac----tccagcctggacaagagggcaagacctgtctcaataaataaataaa-aataaaGTCCATGAGAAAAATAATA--GTGTGTGTGTGTATTTAGGCGTAAAGAGAGAGGAGAATCATtgtggcaaaatatcgggaattgctaaatctgagtaacgtgtgtatagtagttctttgtattatttttgcaacttttctgtaggtttgaaataatttcaaaccaaaaagctttttttaaaTTATCCCTTCGCAAGTTTCTTTTCCCTCTTCCTTCAAGGGCTGCACTCTTCTATCAAGTGTTAACGTAGGTGGATACTAAAACAGAAGGGTCAGTACCGCCTCGGGGGATTTAGGTGCAGGTGAGGAGGTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1909644 1159 +   2316924 ---gctgggcgcagtggctcgcgctagtaatctcaacacttcaggaggctgagacgtgtggatcacttctttcaggtcagaaatcgagaacagcctggccaacatggcaaaaccccgtatctactaaaaatacaaaactttgccgggtgtgggggccgcgcctgtagttccagctattcgggaggctgaggcaggataatcgcttgaattcgggaggaggacgttgcagcg-agccaagatcgcgccactgcact-cagcctgggcgactgagtgaga--ctgtctcaagaaaaaaaag--aaaa-----aaaaaaaagtacattttccctacagatctgtctgctaactgggcctggaagaaatacctgagaaacaatgagcaagataactctatattttgattttcaaataccattctctactaaaaggaaccagagatactaatcgaaaatagctactattgtcaactacactgattccaggactgtgccagaaaaactacaagatgaacctaagatatcttgctgtgccagaatgatggggatgatttaaaagaatacagaagcGCAGGggtagctcgcgcctgtaatcccagcactttgggagaccgaggcgggcagatcaccagaggttaggagttccagaaccacctggccaacatggtgaagctccgtctctattaaaaatgcaaaaactggcctggcgtggtggtgcatgcctctaatcccagctacttgggaagcagagataggagaatcgcttgaaccc-agaggcagaggttgcagtgagccgagatcgcaccactgcgc----tccagcctggacaagagggcaagacctgtctcaataaataaataaa-aataaaGTCCATGAGAAAAATAATA--GTGTGTGTATGTATTTAGGCGTAA--AGAGAGGAGAATCATtgtggcaaaatatcgggaattgctaaatctgagtaacgtgtgtatggtagttctttgtattagttttgcaacttttctgtaggtttgaaataatttcaaaccaaaaagcttttttttaaTTATCCCTTCTCAAATTTCTTTTCCCTCTTCCTTCAAGGACTGCACTCTTCTATCAAGAGTTAACGTAGGTGGGTACTAAAACAGAAGGGTCAGTACCGCCTCCGGGGATTTAGGTGCAGGCGAGGAGGTGAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1783909 1167 -   3067355 ---gccgggcgcagtggctcgcgctggtaatctcaacacttcgggaggctgagacgtgtggatcacttctttcaggtcagaaatcgagaacagcctggccaacatggcaaaatcccgtatctactaaaaatacaaaactttgccgggtgtaggtgccgcgcctgtagtcccagctattcgggaggctgaggcaggataatcgcttgaattcgggaggaggacgttgcagcg-agccaagatcgcgccactgcact-cagtctgggcgac----tgagactctgtctcaagaaagagaaa--aaaaagaa-aacaaaaagtacattttccctacagatctgtctgctaactgggcctcgaagaaatacctgagaaacaatgagcaagataactctatattttgattttcaaataccattctctactaaaaggaaccagagatactaatagaaagtagctactattatcaactacactgattccaggactgtgccaggaaaactacaagatgaacctaagatatcttgctgtgccagaatgatggggatgatttaaaagaacacagaagcGCAGGggtagctcgcgcctgtaatcccagcacttcgggagaccgaggcgggcagatcaccagaggttaggagttccagaaccacctggccaacatggtgaagctctgtctctattaaaaatacaaaaactggcctggcgtagcggtgcatgcctctaatcccagctacttgggaaggagagataggagaatcgcttgaaccc-tgaggcagaggttgcagtgagccgagatcgcaccactgcactccatccagcctggacaagagggcaagacctgtctcaataaataaataaa-aataaaGTCCATGAGAAAAATAATA--GTGTGTGTGTGTATTTAGAAGTAAAGGGAGAGGAGAATCATtgtggcaaaataccgggaattgctaaatctgagtaacgtgtgtatggtagttctttgtattatttttgcaacttttctgtaggtttgaaataatttcaaaccaaaaagcttgttttaaaTTATCCCTTCTCAAATTTCTTTTCCCTCTTCCTTCAAGGGCTGTACTCTTTTATCAAGAGTTAACGTAGGTGGATACTAAAACAGAAGGGTCAGTACCGCCTCGGGGGATTTAGGTGCAGGTGAGGAGGTGAG
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            164668 10722 -    375362 T
e otoGar3.GL873742           1489126 11973 -   2232465 T
e aotNan1.NW_018494050v1      102679 10007 -    285216 T
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171341614 17771 - 171630274 T
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=910306.000000
s hg38.chr6_GL000254v2_alt     79647 199 +   4827813 AAAGTGGAATTCCCAGCTCTTAGAAACGAAGACCCAGGAGCGTGGGTCGCTGCCCGTCCTTACCCT-GCCAGCGCCTGGGCCAGCACCATGGTCGCGAAACCCAGCATGGATTTCGTCTTGGGGACGCTATGGCTCCAGTTCTGACACTCAAGAAACGATGGATGGAGAGGAGAACGAGGACCACCTTCGAAAAGAGTTC
s panTro5.chr6              29050233 199 + 175400573 AAAGTGGAATTCCCAGCTCTTAGAAACGAAGACCCAGGAGCGTGGGTCGCTGCCCGTCCTTACCCA-GCCAGCGCCTGGGCCAGCACCATGGTCGCGAAACCCAGCATGGATTTCGTCTTGGGGACGCTATGGCTCCAGTTCTGACACTCAAGAAAAGATGGATGGAGAGGAGAACGAGGACCACCTGCGAAAAGAGTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29294286 199 + 173848474 AAAGTGGAATTCCCAGCTCTTAGAAACGAAGACCCAGGAGCGTGGGTCGCTGCCCGTCCTTACCCT-GCCAGCGCCTGGGCCAGCACCATGGTCGCGAAACCCAGCATGGATTTCGTCTTGGGGACGCTATGGCTCCAGTTCTGACACTCAAGAAAAGATGGATGGAGAGGAGAACGAGGACCACCTGCGAAAAGAGTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5094318 199 +   6154872 AAAGTGGAATTCCCAGCTCTTAGAAACGAAGACCCAGGAGCGTGGGTCGCTGCCCGTCCTTACCCT-ACCAGCGCCTGGGCCAGCACCATGGTCGCGAAACCTAGCATGGATTTCGTCTTGGGGACGCTATGGCTCCAGTTCTGACACTCAAGAAACGACGGATGGAGAGGAGAACGAGGACCAACTGCGAAAAGAGTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29277053 197 + 172585720 aaaGTGGAATTCCCAGCTATTAGAAATGAAGACCCAGGAGCGTGGGTCGCTGCCAGTCCTTACCCTCGCCAGAGCCTGGGCCAGCACCGTGGTCTCGAAACCCAGCATGGATTTCGTTTTGCGGACGCTATTGCTCCAGTTCTGACAGTCAAGAAACGACGGATGGA---GAGAACGAGTACCGCCTGCGAAACGAGCTC
i rheMac8.chr4             I 321 C 0
s macFas5.chr4              28925823 197 - 170955103 aaaGTGGAATTCCCAGCTATTAGAAATGAAGACCGAGGAGCGTGGGTCGCTGCCAGTCCTTACCCTCGCCAGAGCCTGGGCCAGCACCGTGGTCTCGAAACCCAGCATGGATTTCGTTTTGCGGACGCTATTGCTCCAGTTCTGACAGTCAAGAAACGACGGATGGA---GAGAACGAGTACCGCCTGCGAAACGAGCTC
i macFas5.chr4             I 321 C 0
s macNem1.NW_012011356v1     1903234 197 -   2996164 AAAGTGGAATTCCCAGCTATTAGAAATGAAGACCCAGGAGCGTGGGTCGCTGCCAGTCCTTACCCTCGCCAGAGCCTGGGCCAGCACCGTGGTCTCGAAACCCAGCATGGATTTCGTTTTGCGGACGCTATTGCTCCAGTTCTGACAGTCAAGAAACGACGGATGGA---GAGAACGAGTACCGCCTGCGAAACGAGCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1788419 197 -   2157725 AAAGTGGAATTCCCAGCTATTAGAAATGAAGAACCAGGAGCGTGGGTCGCTGCCAGTCCTTACCCTCGCCAGCGCCTGGGCCAGCACCGTGGTCTCGAAACCTAGCATGGATTTCGTTTTGCGGACGCTATTGCTCCAGTTCTGACAGTCAAGAAACGACGGATGGA---GAGAACGAGGACCGCCTGCGAAAAGAGCTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28242755 197 -  71996105 AAAGTGGAATTCCCAGCTATTAGAAATGAAGACCCAGGAGCGTGGGTCGCTGCCCGTCCTTACCCTCGCCAGCGCCTGGGCCAGCACCGTGGTCTCGAAACTCAGCATGGATTTCGTCTTTGGGACTCTATTGCTCCAGTTCTGACAGTCAAGAAATGACGGATGGA---GAGAACGAGGACCGCCTGCGAAAAGAGCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1910803 197 +   2316924 AAAGTGGAATTCCCAGCTATTAGAAATGAAGACCCAGGAGCGTGGGTCGCTGCCAGTCCTTACCCTCGCCAGCGCCTGGGCCAGCACCGTGGTCTCGAAACCTAGCATGGATTTCGTTTTGCGGACGCTATTGCTCCAGTTCTGACAGTCAAGAAACGACGGATGGA---GAAAACGAGGACCGCCTGCGAAAAGAGCTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1785076 197 -   3067355 AAAGTGGAATTCCCAGCTATTAGAAATGAAGACCCAGGAGCGTGGGTCGCTGCCCGTCCTTACCCTCGCCAGCGCCTGGGCCAGCACCGTGGTCTCGAAACCCAGCATGGATTTCGTCTTGGGGACGCTATTGCTCCAGTTCTGACATTCAAGAAATGACGGATGGA---GAGAACGAGGACCGCCTGCGAAAAGAGCTC
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378348            164668 10722 -    375362 T
e otoGar3.GL873742           1489126 11973 -   2232465 T
e aotNan1.NW_018494050v1      102679 10007 -    285216 T
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171341614 17771 - 171630274 T
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=2261374.000000
s hg38.chr6_GL000254v2_alt     79846 492 +   4827813 GAGAGGGAAGCAGGGACGCGGTGGGGTGCGC-ACCTGCGGCGGCGGCGGCAAAGGCGGAGGAGAAGCGAAGTGGGCGAGCGCCCGAGGCTGCCAGAGGATCTGGGTGGGCCGGAAGGCGGAGTGCAGCCCGGAAGCCCATCTCCGCTGCTTTTCCTCGCTGTCCGCGATAAGCGAGAGGGCTCATTCCCTGTTGGAGAAGTGAGCTGAAAAC-ACTTTCCTCGCAAGATCTCCCTCGTTTTGCTCAAGGCAGTCGCGGCGTTGAGAACGCCTCGCAGCTCCTTTACTGGCTGGGGCACTGGGGAGAACGGGTACCCTTGAGTTTTGGTACAGGCGGGTGGTATTAGTGGCTTCCAAGGAAACGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTAGCGAGGGGGAGAGTGTTTAACCGGGAAGAGAGACCCTCCCG---CTGAAGCATAGGG--------TCCTTTGTTATAGAT-AGGAAGAGTGTTCTTTGCTTTTGTTTT
s panTro5.chr6              29050432 492 + 175400573 GAGAGGGAAGCAGGGACGCGGTGGGGTGCGC-ACCTGCGGCGGCGGCGGCAAAGGCGGAGGAGAAGCGAAGTGGGCGAGCGCCCGAGGCTGCCAGAGGATCTGGGTGGGCCGGAAGGCGGAGTGCAGCCCGGAAGCCCATCTCCGCTGCTTTTCCTCGCTGTCCGCGATAAGCGAGAGGGCTCATTCCCTGTTGGAGAAGTGAGCTGAAAAC-ACTTTCCCCGCAAGATCTCCCTCGTTTTGCTCAAGGCAGTCGCGGCGTTGAGAACGCCTCGCAGCTCCTTTACTGGCTGGGGCACTGGAGAGCACGGGTACCCTTGAGTTCTGTTACAGGCGGGTGGTATTAGTGGCTTCCAAGGAAACGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTAGCGAGGGGGAGAGTGTTTAACCGGGAAGAGAGACCCTCCCG---CTGAAGCATAGGG--------TCCTTTGTTATAGAT-AGGAAGAGTGTTCTTTGCTTTTGTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29294485 492 + 173848474 GAGAGGGAAGCAGGGACGCGGTGGGGTGCGC-ACCTGCGGCGGCGGCGGCAAAGGCGGAGGAGAAGCGAAGTGGGCGAGCGCCCGAGGCTGCCAGAGGATCTGGGTGGGCCGGAAGGCGGAGTGCAGCCCGGAAGCCCATCTCCGCTGCTTTTCCTCGCTGTCCGCGATAAGCGAGAGGGCTCATTCCCTGTTGGAGAAGTGAGCTGAAAAC-ACTTTCCCCGCAAGATCTCCCTCGTTTTGCTCAAGGCAGTCGCGGCGTTGAGAACGCCTCGCAGCTCCTTTACTGGCTGGGGCACTGGAGAGCACGGGTACCCTTGAGTTCTGTTACAGGCGGGTGGTATTAGTGGCTTCCAAGGAAACGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTAGCGAGGGGGAGAGTGTTTAACCGGGAAGAGAGACCCTCCCG---CTGAAGCATAGGG--------TCCTTTGTTATAGAT-AGGAAGAGTGTTCTTTGCTTTTGTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5094517 487 +   6154872 GAGAGGGAAGCAGGGACGCGGTGGGGTGCAC-ACCTGCGGCGGCGGCGGCAAAGGCGGAGAAGA---GAAGTGGGCGAGCGCCCGAGGCTGCCAGAGGATCTGGGTGGGCCGGAAGGCGGAGTGCAGCCCGGAAGCCCATCTCCGCTGCTTTTCCTCGCTGTCAGCGATAAGCGAGAGGGCTCATTCCCTGTTGGAGAA--GAGCTGAAAAC-ACTTTCCCCGCAAGATCTCCCTCGTTTTGCTCAAGGCAGTCGCGGCGTTGAGAACGCCTCGCAGCTCCTTTACTGGCTGGGGCACTGGGGAGCACGGGTACCCTTGAGTTTTGGTACAGGCGGGTGGCATTAGTGGCTTCCAAGGAAACGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTAGCGAGGGGGAGAGTGTTTAACCGGGAAGAGAGACCCTCCTG---CTGAAGCATAGGG--------TCCTTTGTCATAGAT-AGGAAGAGTGTTCTTTGCTTTTGTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29277250 472 + 172585720 GAGAGGGAAGCAGGGACGCGGTGGGATGCGCAACCTACGGCGGCGGCGGCAAAGGCGGAGGAGAAGCGAAGTGGGCGAGCGCCCGAGGCTGCCAGAGGATCTGGATGGGCCGGTAGGCGGAGTGCAGCCCGGAAGCCCATCTCCGCTGCATTTCCTCGGTGTCGGCGATAAGCGAGAGGGCTCATTCCCTGT---AGAAGTGAACTGAAAAC-ACTTTCC-CGCAAGATCTCTCTCGTTTTGCTTAAGGCAGTCGCGGCATTGAGAATGCCTCGCAGCTCCTTTACTGACTCGGACACTGGGGATCACGGGTACTCTTGAGTTTTGGT------GGGTGGTATTGGTGGCTTCCGAGGAAACGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTCGCGAG-----GAGTGTTGAACCAGGAAGAGAAACCCTCCTG---CTTAAGC--------------CCCTTTGTTATAGGT-AGGAAGAGTGTTCTTTGCTTTTGTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28926020 476 - 170955103 GAGAGGGAAGCAGGGACGCGGTGGGATGCGCAACCTACGGCGGCGGCGGCAAAGGCGGAGGAGAAGCGAAGTGGGCGAGCGCCCGAGGCTGCCAGAGGATCTGGATGGGCCGGTAGGCGGAGTGCAGCCCGGAAGCCCATCTCCGCTGCATTTCCTCGGTGTCGGCGATAAGCGAGAGGGCTCATTCCCTGT---AGAAGTGAACTGAAAAC-ACTTTCC-CGCAAGATCTCTCTCGTTTTGCTTAAGGCAGTCGCGGCATTGAGAATGCCTCGCAGCTCCTTTACTGACTCGGACACTGGGGATCACGGGTACTCTTGAGTTTTGGT------GGGTGGTATTGGTGGCTTCCGAGGAAACGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTCGCGAG-GGAAGAGTGTTGAACCAGGAAGAGAAACCCTCCTG---CTTAAGC--------------CCCTTTGTTATAGGT-AGGAAGAGTGTTCTTTGCTTTTGTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1903431 482 -   2996164 GAGAGGGAAGCAGGGACGCGGTGGGATGCGCAACCTACGGCGGCGGCGGCAAAGGCGGAGGAGAAGCGAAGTGGGCGAGCGCCCGAGGCTGCCAGAGGATCTGGGTGGGCCGGGAGGCGGAGTGCAGCCCGGAAGCCCATCTCCGCTGCGTTTCCTCGGTGTCGGCGATTAGCGAGAGGGCTCATTCCCTGT---AGAAGTGAACTGAAAAC-ACTTTCC-CGCAAGATCTCTCTCGTTTTGCTTAAGGCAGTCGCGGCATTGAGAATGCCTCGCAGCTCCTTTACTGACTCGGACACTGGGGATCACGGGTACTCTTGAGTTTTGGTACAGGCGGGTGGTACTGGTGGCTTCCGAGGAAACGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTCGCGAG-GGAAGAGTGTTGAACCAGGAAGAGAAACCCTCCTG---CTTAAGC--------------CCCTTTGTTATAGGT-AGGAAGAGTGTTCTTTGCTTTTGTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1788616 481 -   2157725 GAGAGGGAAGCAGGGACGCGGTGGGATGCGCAACCTACGGCGGCGGCAGCAAAGGCGGAGGAGAAGCGAAGTGGGCGAGCGCCCGAGGCTGCCAGAGGATCTGGGTGGGCCGGGAGGCGGAGTGCAGCCCGGAAGCCCATCTCCGCTGCGTTTCCTCGGTGTCGGCGATAAGCGAGAGGGCTCATTCCCTGT---AGAAGTGAACTGACAAC-ACTTTCC-CGCAAGATCTCTC-CGTTTTGCTTAAGGCAGTCGCGGCATTGAGAATGCCTCGCAGCTCCTTTACTGACTCGGACACTGGGGATCACGGGTACTCTTGAGTTTTGGTACAGTTGGGTGGTATTGGTGGCTTCCGAGGAAACGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTCGCGAG-GGAAGAGTGTTGAACCAGGAAGAGAGACCCTCCTG---CATAAGC--------------CCCTTTGTTATAGGT-AGGAAGAGTGTTCTTTGCTTTTGTTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28242952 479 -  71996105 CAGAGGGAAGCAGGGACGCGGTGGGATGCGCAACCTACGGCGGCGGCGGCAAAGGCGGAGAAGAAGCGAAGTGGGCGAGCGCCCGAGGCTGCCAGAGGATCTGGGTGGGCCGGGAGGCGGAGTGCAGCCCGGAAGCCCATCTCCGCTGCGTTTCCTCGGTGTCCGCGATAAGCGAGAGGGCTCATTCCCTGT---AGAAGTGAACTGAAAAC-ACTTTCC-CGCAAAATCTCTCTCGTTTTGCTTAAGGCAGTCGCGGCGTTGAGAATGTCTCGCAGCTCCTTTACTGACTCGGACACTGGGGATCACGGGTAC---AGGTTTTTGGTACAGGTGGGTGGTATTGGTGGCTTCCGAGGAAAGGACAGAGAAGTCGCCTATTTCCAA-TCCCTACTGTTCGCGAA-GGAAGAGTGTTGAACCAGAAAGAGAGACCCTCCTG---CTTAAGC--------------CCCTTTGTTATAGGT-AGGAAGAGTGTTCTTTGCTTTTGTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1911000 481 +   2316924 GAGAGGGAAGCAGGGACGCGGTGGGATGCGCAACCTACGGCGGCGGCGGCAAAGGCGGAGGAGAAGCGAAGTGGGCGAGCGCCCGAGGCTGTCAGAGGATCTGGGTGGGCCGGGAGGCGGAGTGCAGCCCGGAAGCCCATCTCCGCTGCGTTTCCTCGGTGTCGGCGATAAGCGAGAGGGCTCATTCCCTGT---AGAAGTGAACTGATAAC-ACTTTCC-CGCAAGATCTCTC-CGTTTTGCTTAAGGCAGTCGCGGCATTGAGAATGCCTCGCAGCTCCTTTACTGACTGGGACACTGGGGATCACGGGTACTCTTGAGTTTTGGTACAAGTGGGTGGTATTGGTGGCTTCCGAGGAAACGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTCGCGAG-GGAAGAGTGTTGAACCAGGAAGAGAGACCCTCCTG---CTTAAGC--------------CCCTTTGTTGTAGGT-AGGAAGAGTGTTCTTTGCTTTTGTTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1785273 482 -   3067355 GAGAGGGAAGCAGGGACGCGGTGGGACGCGCAACCTACGGCTGCGGCGGCAAAGGCGGAGGAGAAGCGAAGTGGGCGAGCGCCCGACGCTGCCAGAGGATCTGGGTGGGCCGGGAGGCGGAGTGCAGCCTGGAAGCCCATCTCCGCTGCGTTTTCTCGGTGTCCGCGATAAGCGAGAGGGCTCATTCCCTGT---AGAAGTGAACTGAAAAC-ACTTTCC-CTCAAGATCTCTCTCGTTTTGCTTAAGGCAGTCGCGGCATTGAAAATGCCTCGCAGCTCCTTTACTGACTCGGACAGTGGGGATCACGGGTGCTCTTGAGTTTTGGTACAGGTGGGTGGTATTGGTGGCTTCCGAGGAAAGGACAGAGAAGCCGCCTATTTCCAA-TCCCTACTGTTCGCGAG-GGAAGAGTGTTGAACCAGGAAGAGAGACCCTCCTG---CTTAAGC--------------CCCTTTGTTATAGAC-AGGAAGAGTGTTCTTTGCTTTTGTCTT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1477153 379 -   2232465 GAGAGGGCAGCTGAGGCGCTCCGGGGCGCgc-------ggcggaggcggcggaggcggcggaggcggcaggcg---gAGGGCGCGAGG------------TTTGGCTGGCGGGAAGGCCGCGCGCCG----------------CGCTGCTTCT-----------------GGACACGGGGCGCGCGCGTAGA---GGAAGCCGGCGGAAAGCGATTTTCCCCAGAAGGTAACCCTCCATGTGACTGAGACTGGGCAGGCAGTGAGAGCTCCTCGCGTCTCTTTTGGTGGCTAGGACACCCGAGAGCACGCGTG----------------------------------------------------AGAGA---CACGGATTTCCAATTTCCTTGCGTTTGTGAGGCGGAAAGTGTGGAACGCAGAAGCAGGATTTGCCCGAGTCTTAAACCCAGAGACTTTAGCGCCTCAACTGTAAGTGAGAGAGGGTGGT---------------
i otoGar3.GL873742         T 11973 C 0
e saiBol1.JH378348            164668 10722 -    375362 T
e aotNan1.NW_018494050v1      102679 10007 -    285216 T
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171341614 17771 - 171630274 T
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=3165129.000000
s hg38.chr6_GL000254v2_alt     80338 585 +   4827813 TGTTATAGCTTGTCAAGCTTGGAATACAAGGCATGAAAAACAAGAAAGGTAAGGCAGTCCCAGTATATTTTAAACTTACGAGGGTTTTCAGAAGGAGTACTACCTTGTTTTTATGGA-----ATTCAG-------GGTGTCCAGATTTCAACCTA----CCTAGCAGAGTGAAGCTCTA--TGAGTC-TAATATCTT-GGCTTTCTTCCACATCAGCAAGCCTCTGAAA----TTCGGGTTTCTTTCTGGACAATATCACCTACA-TTTTGCAGTCGGCTCCTATATTGCCTGCATCCAACTCGTGGAAGCAAGAACAG-TGGGAAAAGCCAAGGTTACCACATAAAAGAAGATCCTTACATGAGACAAGTGTAAATAAAGCAGCAGCTGAG--GTGTGTGTAGAGGAAGAGACAAACGTG-AAAATGTAGAAAG-TGGATAC----AGAA----TTTTTTCCAAGGAGGAAGAGGAATGGTCTGCTCACAACGAGGAACTCTCT------------------ACTTACTGCTGCAAAGATACTTTTATTACATTTCATGCATATGCTGGATTTTAACA------------ACCAGAACATTGGTAGACTTGGTGGGGGCTGGAGAGACAGCAGTCACTCCCAACCCTGAGGA
s panTro5.chr6              29050924 586 + 175400573 TGTTATAGCTTGTCAAGCTTGGAATACAAGGCATGAAAAACAAGAAAGGTAAGGCAGTCCCAGTATATTTTAAACTTAAGAGGGTTTTCAGAAGGAGTACTACCTTGTTTTTATGGA-----ATTCAG-------GGTGTCCAGATTTCAACCTA----CCTAGCAGAGTGAAGCTCTA--TGAGTC-TAATATCTT-GGCTTTCTTCCACATCAGCAAGCCTCTGAAA----TTCGGGTTTCTTTCTGGACAATATCACCTACACTTTTGCAGTCGGCTCCTATATTGCCTGCATCCAACTCGTGGAAGCAAGAACAG-TAGGAAAAGCCAAGGTTACCACATAAAAGAAGATCCTTACATGAGACAAGTGTAAATAAAGCAGCAGCTGAG--GTGTGTGTAGAGGAAGAGACAAACGTG-AAAATGTAGAAAG-TGGATAC----AGAA----TTTTTTCCAAGGAGGAAGAGGAATGGTCTGCTCACAACAAGGAACTCTCT------------------ACTTACTGCTGCAAAGATACTTTTATTACATTTCATGCATATGCTGGATTTTAACA------------ACCAGAACATTGGTAGAATTGGTGGGGGCTGGAGAGACAGCAGTCACTCCCAACCCTGAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29294977 586 + 173848474 TGTTATAGCTTGTCAAGCTTGGAATACAAGGCATGAAAAACAAGAAAGGTAAGGCAGTCCCAGTATATTTTAAACTTAAGAGGGTTTTCAGAAGGAGTACTACCTTGTTTTTATGGA-----ATTCAG-------GGTGTCCAGATTTCAACCTA----CCTAGCAGAGTGAAGCTCTA--TGAGTC-TAATATCTT-GGCTTTCTTCCACATCAGCAAGCCTCTGAAA----TTCGGGTTTCTTTCTGGACAATATCACCTACACTTTTGCAGTCGGCTCCTATATTGCCTGCATCCAACTCGTGGAAGCAAGAACAG-TAGGAAAAGCCAAGGTTACCACATAAAAGAAGATCCTTACATGAGACAAGTGTAAATAAAGCAGCAGCTGAG--GTGTGTGTAGAGGAAGAGACAAATGTG-AAAATGTAGAAAG-TGGATAC----AGAA----TTTTTTCCAAGGAGGAAGAGGAATGGTCTGCTCACAACAAGGAACTCTCT------------------ACTTACTGCTGCAAAGATATTTTTACTACATTTCATGCATATGCTGGATTTTAACA------------ACCAGAACATTGGTAGAATTGGTGGAGGCTGGAGAGACAGCAGTCACTCCCAACCCTGAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5095004 586 +   6154872 TGTTTTAGCTTGTCAAGCTTGGAATATAAGGCATGAAAAACAAGAAAGGTAAGGCAGTCCCAGTATATTTTAAACTTAAGAGGGTTTTCAGAAGGAGTACTACGTTGTTTTTATGGA-----ATTCAG-------GGTGTCCAGATTTCAACCTA----CCTAGCAGAGTGAAGCTCTA--TGAGTC-TAATATCTT-GGCTTTCTTCCACATCAGCAAGCCTCTGAAA----TTCGGGTTTCTTTCTGGACAATATCACCTACACTTTTGCAGTCGGCTCCTATATTGCCTGCATCCAACTCGTGGAAGCAAGAACAG-TGGGAAAAGCCAAGGTTACCACATAAAAGAAGATCCTTACATGAGACAAGTGTAAATAAAGCAGCAGCTGAG--GTGTGTGTAGAGGAAGAGACAAACGTG-AAAATGTAGAAAG-TGGATAC----AGAA----TTTTTTCCAAGGAGGAAGAGGAATGGTCTGCTCACAACAAGGAACTCTCT------------------ACTTACTGCTGCAAAGATACTTTTATTACATTTCATGCATATGCTGGATTTTAACA------------ACCAGAACATTGGTAGAATTGGTGGGGGCTGGAGAGTCAGCAGTCACTCCCAACCATGAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29277722 587 + 172585720 TGTTTTAGCTTGTCAAGCTTGGAATACAAGTCATGGAAAACAAGAAAGGTAGGGCAGTCCCAGTATATTTTAAACTTAAGAGGGTTTTCAGAAGAAGTACTACCTTGTTTTTATGGA-----ATTCAG-------GGTGTCCAGATTTCAACCTA----CCCAGCAGAGGGAAGCTCTA--TGAGTC-TAATATCTT-GGCTTTCTTCTACATCAGCAAGCCTCTGAAA----TTCGGGTTCCTTTCTGGACAATATCACCTACACTTTTGCAGTGTGCTCCTATATTACTTACATCCAACTCGTGGAAGCATGAACAG-TGGGAAAAGCCAAGGTTACCACATAAAAGAGGATCCTTACATGAGACAAGTGGAAATAAAGCAGCAGCTGAGGTGTGTGTGTAGAGGAAGAGACAAACGTG-AAAATGTAGAAAG-TGGATAG----AGAA----TTTTTTCCAAGGAGGAAGAGGAATGGTCTACTCACAACAAGGAACTCTCT------------------ACTTACTGTTGTGAAGATACTTTTATTACATTTCATGCATACACTGGATTTTAACA------------ACCAGAACACTGGTAGAATTGGTGGGGGCTGCAGAGACAGCAGT-ACTCCCAACCCTGAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28926496 587 - 170955103 TGTTTTAGCTTGTCAAGCTTGGAATACAAGTCATGGAAAACAAGAAAGGTAGGGCAGTCCCAGTATATTTTAAACTTAAGAGGGTTTTCAGAAGAAGTACTACCTTGTTTTTATGGA-----ATTCAG-------GGTGTTCAGATTTCAACCTA----CCCAGCAGAGGGAAGCTCTA--TGAGTC-TAATATCTT-GGCTTTCTTCTACATCAGCAAGCCTCTGAAA----TTCGGGTTCCTTTCTGGACAATATCACCTACACTTTTGCAGTGTGCTCCTATATTACTTACATCCAACTCGTGGAAGCATGAACAG-TGGGAAAAGCCAAGGTTACCACATAAAAGAGGATCCTTACATGAGACAAGTGGAAATAAAGCAGCAGCTGAGGTGTGTGTGTAGAGGAAGAGACAAACGTG-AAAATGTAGAAAG-TGGATAG----AGAA----TTTTTTCCAAGGAGGAAGAGGAATGGTCTACTCACAACAAGGAACTCTCT------------------ACTTACTGTTGCGAAGATACTTTTATTACATTTCATGCATACACTGGATTTTAACA------------ACCAGAACACTGGTAGAATTGGTGGGGGCTGCAGAGACAGCAGT-ACTCCCAACCCTGAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1903913 586 -   2996164 TGTTTTAGCTTGTCAAGCTTGGAATACAAGTCATGGAAAACAAGAAAGGTAGGGCAGTCCCAGTATATTTTAAACTTAAGAGGGTTTTCAGAAGGAGTACTACCTTGTTTTTATGGA-----ATTCAG-------GGTGTCCAGATTTCAACCTA----CCCAGCAGAGGGAAGCTCTA--TGAGTC-TAATATCTT-GGCTTTCTTCTACATCAGCAAGCCTCTGAAA----TTCGGGTTCCTTTCTGGACAATATCACCTACACTTTTGCAGTGTGCTCCTATATTACTTACATCCAACTCGTGGAAGCATGAACAG-TGGGAAAAGCCAAGGTTACCACATAAAAGAGGATCCTTACATGAGACAAGTGGAAATAAAGCAGCAGCTGAGGTGTGTGTGTAGAGGAAGAGACAAACGTG--AAATGTAGAAAG-TGGATAG----AGAA----TTTTTTCCAAGGAGGAAGAGGAATGGTCTACTCACAACAAGGAACTCTCT------------------ACTTACTGTTGCGAAGATACTTTTATTACATTTCATGCATACACTGGATTTTAACA------------ACCAGAACACTGGTAGAATTTGTGGGGGCTGCAGAGACAGCAGT-ACTCCCAACCCTGAGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1789097 587 -   2157725 TGTTTTAGCTTGTCAAGCTTGGAATACAAGTCATGGAAAACAAGAAAGGTAGGGCAGTCCCAGTATATTTTAAACTTAAGAGGGTTTTCAGAAGGAGTACTACCTTGTTTTTATGGA-----ATTCAG-------GGTGTCCAGATTTCAACCTA----CCCAGCAGAGGGAAGCTCTA--TGAGTC-TAATATCTT-GGCTTTCTTCTACATCAGCAAGCCTCTGAAA----TTCGGGTTCCTTTCTGGACAATATCACCTACACTTTTGCAGTGTGCTCCTATATTACTTACATCCAACTCGTGGAAGCATGAACAG-TGGGAAAAGCCAAGGTTACCACATAAAAGAAGATCCTTACATGAGACAAGTGGAAATAAAGCAGCAGCTGAGGTGTGTGTGTAGAGGAAGAGACAAACGTG-AAAATGTAGAAAG-TGGATAG----AGAA----TTTTTTCCAAGGAGGAAGAGGAATGGTCTACTCACAACAAGGAACTCTCT------------------ACTTACTGTTGCGAAGATACTTTTATTACATTTCATGCATACACTGGATTTCAACA------------ACCAGAACATTGGTAGAATTGGTGGGGGCTGAAGAGACAGCAGT-ACTCCCAACCCTGAGGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28243431 587 -  71996105 TGTTTTAGCTTGTCAAGCTTGGAATACAAGTCATGGAAAACAAGAAAGGTAGGGCAGTCCCAGTATATTTTAAACTTAAGAGGGTTTTCAGAAGGAGTATTACCTTGTTTTTACGGA-----ATTCAG-------GGTGTCCAGATTTCAACCTA----CCTAGCAGAGGGAAGCTCTA--TGAGTC-TAATATCTT-GGCTTTCTTCTACATCAGCAAGCCTCTGAAA----TTCGGGTTCCTTTCTGGACAATACCACCTACACTTTTGCAGTGTGCTCCTATATTACTTACATCCAACTCGTGGAAGCATGAACAG-TGGGAAAAGCCAAGGTTACCACATAAAAGAAGATCCCTACATGAGACAAGTGGAAATAAAGCAGCAGCTGAGGTGTGTGTGTAGAGGAAGAGACAAACGAG-AAAACGTAGAAAG-TGGATAG----AGAA----TTTTTTCCAAGGAGGAAGAGGAATGGTCTACTCACAACAAGGAACTCTCT------------------ACTTACTGTTGCGAAGATACTTTTATTACATTTCATGCATACACTGGATTTTAACA------------ACCAGAACATTGGTAGAATTGGTGGGGGCTGAAGAGACAGCAGT-ACTCCCAACCCTGAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1911481 587 +   2316924 TGTTTTAGCTTGTCAAGCTTGGAATACAAGTCATGGAAAACAAGAAAGGTAGGGCAGTCCCAGTATATTTTAAACTTAAGAGGGTTTTCAGAAGGAGTACTACCTTGTTTTTATGGA-----ATTCAG-------GGTGTCCAGATTTCAACCTA----CCCAGCAGAGGGAAGCTCTA--TGAGTC-TAATATCTT-GGCTTTCTTCTACATCAGCAAGCCTCTGAAA----TTCGGGTTCCTTTCTGGACAATATCACCTACACTTTTGCAGTGTGCTCCTATATTACTTACATCCAACTCGTGGAAGCATGAACAG-TGGGAAAAGCCAAGGTTACCACATAAAAGAAGATCCTTACATGAGACAAGTGGAAATAAAGCAGCAGCTGAGGTGTGTGTGTAGAGGAAGAGACAAACGTG-AAAATGTAGAAAG-TGGATAG----AGAA----TTTTTTCCAAGGAGGAAGAGGAATGGTCTACTCACAACAAGGAACTCTCT------------------ACTTACTGTTGCGAAGATACTTTTATTACATTTCATGCATACACTGGATTTTAACA------------ACCAGAATATTGGTAGAATTGGTGGGGGCTGAAGAGACAGCAGT-ACTCCCAACCCTGAGGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1785755 587 -   3067355 TGTTTTAGCTTGTCAAGCTTGGAATACAAGTCATGGGAAACAAGAAAGGTAGGGCAGTCCCAGTATATTTTAAACTTAAGAGGGTTTTCAGAAGGAGTACTACCTTGTTTTTATGGA-----ATTCAG-------GGTGTCCAGATTTCAACCTA----CCTAGCAAAGGGAAGCTCTA--TGAGTC-TAATATCTT-GGCTTCCTTCTACATCAGCAAGCCTCTGAAA----TTCGGGTTCCTTTCTGGACAGTATCACCTACACTTTTGCAGTGTGCTCCTATATTACTTACATCCAACTCGTGGAAGCACGAACAC-TGGGAAAAGCCAAGGTTACTACATAAAAGAAGATCCTCACATGAGACAGGTGGAAATAAAGCAGCAGCTGAGGTGTGTGTGTAGAGGAAGAGACAAACGTG-GAAATGTGGAAAG-TGGATAG----AGAA----TTTTTTCCAAGGAGGAAGAGGAATGGTCTACTCACAACAAGGAACTCTCT------------------ACTTACTGCTGCGAAGATACTTTTATTACATTTCATGCATACACTGGATTTTAACA------------ACCAGAGCATTGGTAGAATTGGTGGGGGCTGAAGAGACAGCAGT-ACTCCCAACCCTGAGGG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1477532 608 -   2232465 --TTTTAGCTTGTTAAGCTTGAATTATAAGACGTGGA----AAGTAAGGTAAGGTAGTAACGGAATATTTTAAACTTGAAATGATTTTTAGAAAGGCTGCTCTGTTGTTTCTAAGTA-----GTTTAGTTGGTAAAGTATCAAGATTTCAACCTAGAGGGCTGGGAGCACGAAACTCTATGTGAGTC-TAATACCTTAGGCTTTCTTC--CATAAGTCAGCCCCTGGAAATTTTTTAGGTTTCTTTCTAGAGAATCTCGCCCGAGCTTTTACAGTGGGTTCCTATATTGCTCGCATCCAACTCTTGGAAGAGTGAAGAACCGGGAAACGCCGAAGTTACCATAC-AAAGAAGACCCTTACAAGATTTGACTGTAAATATATTAATGGCTTAG----ACGTGGAAAGGAAGATAAAAATGTGAAAAAGGTAGAAGG-TAGTTAG----ACAGGATTTTTCTTCCAAGGAAGGAGAGCAATGGTCAGCC----ACAAAGAAGTTTCTTTCAGTAGCATGAGCCTGACTCAACGCTGGGAAGATACTGTAATTTCACGTCATACATAGAGTACGTTTTAACAATTTAATGTGAGACCAGAAAACTGG-AGACAGAGCTAAGATCAGAGTTCCAGTAGTCA----------------
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25849283 568 +  26524999 TGCTGTTGTTTG---AGCTTGGGCTACAAGACATGAAAAATAAGAAA-GCGAGGCAGTAACTGGATATTTT-AATTTGGAATGGTTTTCAGAAAGGCAGTTACCTCGTCTACACAGCTCAATGTGTAG-------GGTGTGGGGACTCCA---------CC--------------------TGAGCCGTAGCATCTCAGGCCTCCTTTCCCAAGAGCCAGCCTCTGAAA----TCCAGCTTTGTCTCCC-AGAATTTTGCCCTCGCTTTTGCAATGGGCTCCTGCATTGA-TGGGTCGGATTCCTGGAAGCTTGGAGGG-CGGGAAAGGGCAAAGCTACCTTG-AACAGAAGGCCCTT-TAAGAGATAAG----AGACAAGCAGCATGGTAG----GCTTAGGGCGGAGAGTACAGGTGTG---AGGGTAGAAAGCTGGGGAGGAGCAGGA----TTTCTGCCAAGGACAGGAAGGATGGGCCTGTGAGCGACCAACAAGTCTCT--CCGCAGCACATGCCTGACTTAAC-CTAAGGAGATATTTTAATTACCATTCATTCATATTATAGTTTTTAGCATTTTGATCCTAGACGAGAGAACTGGCCAAATTAGTGG-GGCTGGGGAGGTAGC---------------TGGGG-
i canFam3.chr35            N 0 C 0
e saiBol1.JH378348            164668 10722 -    375362 T
e aotNan1.NW_018494050v1      102679 10007 -    285216 T
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171341614 17771 - 171630274 T
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=1417280.000000
s hg38.chr6_GL000254v2_alt     80923 178 +   4827813 TGAGTCCTC-ACCCTGAGGGTGGAGAGAAAATGATTAC--TCTCTGCCACA-GGGCTTAGAATCGTCCAAGCCTGGGTTTCAAATTGCAAGGCCCAAATAGCTTGAGAGAGCTCCAGGTATTTCAGC------------------TCAAAAGAGTCTCCTGGTTCAAGAGAATTCCTGTGAGTTCC-----TCCACAGGAAAATC
s panTro5.chr6              29051510 178 + 175400573 TGAGTCCTC-ACCCTGAGGGTGGAGAGAAAATGATTAC--TCTCTGCCACA-GGGCTTAGAATCGTCCAAGCCTGGGTTTCAAATTGCAAGGCCCAAATAGCTTGAGAGAGCTCCAGGTATTTCAGC------------------TCAAAAGAGTCTCCTGGTTCAAGAGAATTCCTGTGAGTTCC-----TCCACAGGAAAATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29295563 178 + 173848474 TGAGTCCTC-ACCCTGAGGGTGGAGAGAAAATGATTAC--TCTCTGCCACA-GGGCTTAGAATCGTCCAAGCCTGGGTTTCAAATTGCAAGGCCCAAATAGCTTGAGAGAGCTCCAGGTATTTTAGC------------------TCAAAAGAGTCTCCTGGTTCAAGAGAATTCCTGTGAGTTCC-----TCCACAGGAAAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5095590 178 +   6154872 TGAGTCCTC-ACCCTGAGGGTGGAGAGAAAATGATTGC--TCTCTGCCACA-GGGCTTAGAATCGTCCAAGCCTGGGTTTCAAATTGCAAGGCCCAAATAGCTTGAGAAAGCTCCAGGTATTTCAGC------------------TCAAAAGAGTTTCCTGGTTCAAGAGAATTCCTGTGAGTTCC-----TCCACAGGAAAATC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29278309 178 + 172585720 TTAGTCCCC-ACCCTGAAGGTGGAGAGAAAATGATTAC--TCTCTGTCATA-GGGCTTAGAATCGTCCAAGCTTGGGTTTCAAATTGAAGGGCCCAAATAGCTTGAGAAAGCACCAGGTATTTCAGC------------------TCAAAAGAGTCTCTTGGTTCAAGAGAATTCCTGTGAGTTCT-----TTCAGAGGAAAATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28927083 178 - 170955103 TTAGTCCCC-ACCCTGAAGGTGGAGAGAAAATGATTAC--TCTCTGTCATA-GGGCTTAGAATCGTCCAAGCTTGGGTTTCAAATTGAAGGGCCCAAATAGCTTGAGAAAGCACCAGGTATTTCAGC------------------TCAAAAGAGTCTCTTGGTTCAAGAGAATTCCTGTGAGTTCT-----TCCAGAGGAAAATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1904499 178 -   2996164 TTAGTCCCC-ACCCTGAAGGTGGAGAGAAAATGATTAC--TCTCTGTCATA-GGGCTTAGAATCGTCCAAGCTTGGGTTTCAAATTGAAGGGCCCAAATAGCTTGAGAAAGCACCAGGTATTTCAGC------------------TCAAAAGAGTCTCTTGGTTCAAGAGAATTCCTGTGAGTTCT-----TCCAGAGGAAAATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1789684 196 -   2157725 TTAGTCCCC-ACCCTGAAGGTGGAGAGAAAATGATTAC--TCTCTGTCATA-GGGCTTAGAATCGTCCAAGCCTGGGTTTCAAATTGAAGGATCCAAAGAGCTTGAGAAAGCTCCAGGTATTTCAGCTCAAAAGAGTCTCCTGGTTCAAAAGAGTCTCCTGGTTCAAAAGAATTCCTGTGAGTTCT-----TCCAGAGGAAAATC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28244018 178 -  71996105 TTAGTCCCC-ACCCTGAAGGTGGAGAGAAAATGATTAC--TCTCTGTCATA-GGGCTTAGGATCGTCCAAGCCTGGGTTTCAAATTGAAGGGCCCAAATAGCTTGAGAAAGCTCCAGGTATTTCAGC------------------TCAAAAGAGTCTCTTGGTTCAAGAGAATTCCTGTGAGTTCT-----TCCAGAGGAAAATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912068 196 +   2316924 TTAGTCCCC-ACCCTGAAGGTGGAGAGAAAATGATTAC--TCTCTGTCATA-GGGCTTAGAATCGTCCAAGCTTGGGTTTCAAATTGAAGGATCCAAAGAGCTTGAGAAAGCTCCAGGTATTTCAGCTCAAAAGAGTCTCCTGGTTCAAAAGAGTCTCCTGGTTCAAAAGAATTCCTGTGAGTTCT-----TCCAGAGGAAAATC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1786342 178 -   3067355 TTAGTCCCC-ACCCTGAAGGTGGAGAGAAAATGATTAC--TCTCTGTCATA-GGGCTTAGAATCGTCCAAGCCTGGGTTTCAAATTGAAGGGCCCAAATAGCTTGAGAAAGCTCCAGGTATTTCAGC------------------TCAGAAGAGTCTCCTGATTCATGAGAATTCCTGTCAGTTCT-----TCCAGAGGAAAATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171323843 180 - 171630274 TGAGTCCCA-ACCCTGAGGGTGGAGAGAGAATGATTATAGTGTCTTCCTTA-GGGCTTAGAAACTTCCAAGCCTGGGTTTCAAATGGAAAGGCCAAAATAGCTTGAGAGGGCTCCAGGTATTTTGGT------------------GCGAAAGAGTCTCCTGGCTCAAAAGAACTCCTGTGAGTTCT-----TCCACAGGAAAATC
i calJac3.chr4             T 17771 I 2
s saiBol1.JH378348            153946 180 -    375362 TGAGTCCCA-ACCCTGAGGGTGGAGAGAGAAGGATTATAGTGTCTTCCTTA-GGGCTTAGAAACTTCCAAGCCTGGGTTTCAAATGGAAAGGCCAAAATAGCTTGAGAGGGCTCCAGGCATTTTGGC------------------TTGAAAGCGTCTCCTGGCTCAAAACAACTCCTGTGAGTTCT-----TCTACAGGAAAATC
i saiBol1.JH378348         T 10722 I 2
s aotNan1.NW_018494050v1       92672 180 -    285216 TGAGTCCCA-ACCCTGAGGGTGGAGAGAGAATGATTATAGTGTCTTCCTTA-GGGCTTAGAAACTTCCAAGCCTGGGTTTCAAATGGAAAGGCCAAAATAGCTTGAGAGGGCTCCAGGTATTTTGGC------------------TCAAAAGAGTCTCCTGGCTCAAAAGAACTCCTGTGAGTTCT-----TCTACAGGAAAATC
i aotNan1.NW_018494050v1   T 10007 I 116
s otoGar3.GL873742           1478140 161 -   2232465 ------------------GATGAAAAAAGAATGATTCTAGCGTCTGGAATA-GAGCTTGAAAACTTCTGAGTCTGGATTTCAAGTTGAGAGAGCCAAATAACTTGACATAATCCCAGGTATTTTGGT------------------TGGAAAGCATTTCCTGGTGT-------CTATTGTGATTTCCTGGTGTCCACAGACAAATC
i otoGar3.GL873742         C 0 I 2
s canFam3.chr35             25849851 171 +  26524999 TCAGTCCTCAACCCCAAGAGTGGAGAGAACAGTTACAC--TTTTTGCCATAGGGGCTTGGAGTGGTCCAAGTTTGGATTTCTAACTGAGAGACCTAAATAGCTTGATCAGACCCCAGGCATCTTGA-------------------TAGAGTAAGTCTCCAGGTGC--------CCATTTGAGTTCA-----TTTATAGAAAAAGC
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=136190.000000
s hg38.chr6_GL000254v2_alt     81101 19 +   4827813 --AGTCTGTTGTGTGTGACCT
s panTro5.chr6              29051688 19 + 175400573 --AGTCTGTTGTGTGTGACCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29295741 19 + 173848474 --AGTCTGTTGTGTGTGACCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5095768 19 +   6154872 --AGTCTGTTGTGTGTGACCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29278487 19 + 172585720 --AGTCTGTTGTGTGTGACCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28927261 19 - 170955103 --AGTCTGTTGTGTGTGACCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1904677 19 -   2996164 --AGTCTGTTGTGTGTGACCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1789880 19 -   2157725 --AGTCTGTTGTGTGTGACCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28244196 19 -  71996105 --AGTCTGTTGTGGGTGACAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912264 19 +   2316924 --AGTCTGTTGTGTGTGACCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1786520 19 -   3067355 --AGTCTGTTGTGCGTGACCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171324025 19 - 171630274 --AGGCACTTGTGTGTGACCT
i calJac3.chr4             I 2 I 11
s saiBol1.JH378348            154128 19 -    375362 --AGGCACTTGTGTGTGAGCT
i saiBol1.JH378348         I 2 I 11
s otoGar3.GL873742           1478303 19 -   2232465 --GGGCTCTTTTGTGTGACCT
i otoGar3.GL873742         I 2 C 0
s canFam3.chr35             25850022 21 +  26524999 AGAAGATCTATGGTGTGACCT
i canFam3.chr35            C 0 C 0
e aotNan1.NW_018494050v1       92852 116 -    285216 I
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=63735.000000
s hg38.chr6_GL000254v2_alt     81120 12 +   4827813 GAAAAGTTGCAT
s panTro5.chr6              29051707 12 + 175400573 GAAAGGTTGCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29295760 12 + 173848474 GAAAAGTTGCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5095787 12 +   6154872 GAAAAGTTGCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29278506 12 + 172585720 GAAAAGTTACCT
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              28927280 12 - 170955103 GAAAAGTTACCT
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     1904696 12 -   2996164 GAAAAGTTACCT
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012001495v1     1789899 12 -   2157725 GAAAAGTTACCT
i cerAty1.NW_012001495v1   C 0 I 1
s chlSab2.chr17             28244215 12 -  71996105 GAAAAGTTACCT
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012104165v1     1912283 12 +   2316924 GAAAAGTTACCT
i manLeu1.NW_012104165v1   C 0 I 1
s colAng1.NW_012115566v1     1786539 12 -   3067355 GAAAAGTTACCT
i colAng1.NW_012115566v1   C 0 I 1
s otoGar3.GL873742           1478322 12 -   2232465 CCAAAGTTGTCT
i otoGar3.GL873742         C 0 I 1
s canFam3.chr35             25850043 12 +  26524999 GCAAAGTCACCT
i canFam3.chr35            C 0 C 0
e saiBol1.JH378348            154147 11 -    375362 I
e aotNan1.NW_018494050v1       92852 116 -    285216 I
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171324044 11 - 171630274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=28665.000000
s hg38.chr6_GL000254v2_alt     81132 3 +   4827813 AAA
s panTro5.chr6              29051719 3 + 175400573 AAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29295772 3 + 173848474 AAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5095799 3 +   6154872 AAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29278519 3 + 172585720 AAA
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              28927293 3 - 170955103 AAA
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     1904709 3 -   2996164 AAA
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012001495v1     1789912 3 -   2157725 AAA
i cerAty1.NW_012001495v1   I 1 C 0
s chlSab2.chr17             28244228 3 -  71996105 AAA
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012104165v1     1912296 3 +   2316924 AAA
i manLeu1.NW_012104165v1   I 1 C 0
s colAng1.NW_012115566v1     1786552 3 -   3067355 AAA
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chr4             171324055 3 - 171630274 AAA
i calJac3.chr4             I 11 C 0
s saiBol1.JH378348            154158 3 -    375362 AAA
i saiBol1.JH378348         I 11 C 0
s otoGar3.GL873742           1478335 3 -   2232465 AAA
i otoGar3.GL873742         I 1 C 0
s canFam3.chr35             25850055 3 +  26524999 AAA
i canFam3.chr35            C 0 I 114
e aotNan1.NW_018494050v1       92852 116 -    285216 I
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=431199.000000
s hg38.chr6_GL000254v2_alt     81135 78 +   4827813 TATTCAAAGGGTCAAAGAAATGGTAAATTCAACCCCATCCCTGACA-TAAGACGAATACAAACCTCACTGGCTTTCCTA----
s panTro5.chr6              29051722 78 + 175400573 TATTCAAAGGGTCAAAGAAATGGTAAATTCAACCCCATCCCTGACA-TAAGACGAATACAAACCTCACTGGCTTTCCTA----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29295775 78 + 173848474 TATTCAAAGGGTCAAAGAAATGGTAAATTCAACCCCATCCCTGACA-TAAGACGAATACAAACCTCACTGGCTTTCCTA----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5095802 78 +   6154872 TATTCAAAGGGTCAAAGAAATGGTAAATTCAAACCCATCCCTGACA-TAAGATGAATACAAACCTCACTGGCTTTCCTA----
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29278522 78 + 172585720 TATTCAAAAGGTCAAAGAAATGGTAAATGAAACCCCAGCCCTGACA-TAAGATGAATACAATACTCACTGGCTTTCCTA----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28927296 78 - 170955103 TATTCAAAAGGTCAAAGAAATGGTAAATGAAACCCCAGCCCTGACA-TAAGATGAATACAATACTCACTGGCTTTCCTA----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1904712 78 -   2996164 TATTCAAAAGGTCAAAGAAATGGTAAATGAAACCCTAGCCCTGACA-TAAGATGAATACAATACTCACTGGCTTTCCTA----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1789915 78 -   2157725 TATTCAAAAGGTCAAAGAAATGGTAAATGAAACCCCAGCCCTGACA-TAAGATGAATACAATACTCACTGGCTTTCCTA----
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28244231 78 -  71996105 TATTCAAAAGGACAAAGAAATGGTAAATGAAACCCCAGCCCTGACA-TAAGATGAATACAATACTCACTGGCTTTCCTA----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912299 78 +   2316924 TATTCAAAAGGTCAAAGAAATGGTAAATGAAACCCCAGCCCTGACA-TAAGATGAATACAATACTCACTGGCTTTCCTA----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1786555 74 -   3067355 TATTCAAAGGGTCAAAGAAACGGTA----AAACCCCAGCCCTGACA-TAAGATGAATACAATACTCACTGACTTTCCTA----
i colAng1.NW_012115566v1   C 0 I 306
s calJac3.chr4             171324058 78 - 171630274 CACTGAAGGTCTCAAAGAGATAAGAAAACAATCCTCTCCCCTGATG-TAAGGCAAATATAAATCTTCCTGGCTTTCCTA----
i calJac3.chr4             C 0 I 3
s saiBol1.JH378348            154161 78 -    375362 CACTAAAAGTCTCAAAGAGATAATAAAACAACCCTCTCCCCTGATG-TAAGGCAAATACAAATCTTCCTGGCTTTCCTG----
i saiBol1.JH378348         C 0 I 3
s otoGar3.GL873742           1478338 72 -   2232465 TATTGATGATATCAAAACCACTG-----------CCATTCCTGATAGTAAGGCAAATACAGACCCTGGTCACTTCCTTTTGGC
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25850058 114 +  26524999 I
e aotNan1.NW_018494050v1       92852 116 -    285216 I
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=168569.000000
s hg38.chr6_GL000254v2_alt     81213 21 +   4827813 GGTTTGTGTTTTTGATTGAGA
s panTro5.chr6              29051800 21 + 175400573 GGTTTGTGTTTTTGATTGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29295853 21 + 173848474 GGTTTGTGTTTTTGATTGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5095880 21 +   6154872 GGTTTGTGTTTTTGATTGAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29278600 21 + 172585720 GGTTTGAGTTTTTGATTGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28927374 21 - 170955103 GGTTTGAGTTTTTGATTGAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1904790 21 -   2996164 GGTTTGAGTTTTTGATTGAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1789993 21 -   2157725 GGTTTGAGTTTTTGATTGAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28244309 21 -  71996105 GGTTTGAGTTTTTGATTGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912377 21 +   2316924 GGTTTGAGTTTTTGATTGAGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1786935 21 -   3067355 GGTTTGAGTTTTTGATTGAGA
i colAng1.NW_012115566v1   I 306 C 0
s calJac3.chr4             171324139 21 - 171630274 GGTTCGAGCTTTTTATTGAGA
i calJac3.chr4             I 3 C 0
s saiBol1.JH378348            154242 21 -    375362 GGTTTGAGCTTTTTATTGAGA
i saiBol1.JH378348         I 3 C 0
s aotNan1.NW_018494050v1       92968 21 -    285216 GGTTTGAGCTTTTCACTGAGA
i aotNan1.NW_018494050v1   I 116 C 0
s otoGar3.GL873742           1478410 21 -   2232465 ACTTTGAGTCCTTGGCTAAGA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25850058 114 +  26524999 I
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=143204.000000
s hg38.chr6_GL000254v2_alt     81234 16 +   4827813 ATAGGCAGGGAACCCC
s panTro5.chr6              29051821 16 + 175400573 ATAGGCAGGGAACCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29295874 16 + 173848474 ATAGGCAGGGAACCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5095901 16 +   6154872 ATAGGCAGGGAACCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29278621 16 + 172585720 ATAGGTAGGGAACCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28927395 16 - 170955103 ATAGGTAGGGAACCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1904811 16 -   2996164 ATAGGTAGGGAACCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790014 16 -   2157725 ATAGATAGGGAACCCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28244330 16 -  71996105 ATAGGTAGGGAACTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912398 16 +   2316924 ATAGATAGGGAACCCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1786956 16 -   3067355 ATAGGTAGGGAACCCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171324160 16 - 171630274 ATAGTCAGGGAACCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            154263 16 -    375362 ATAGTCAGAGAACCCC
i saiBol1.JH378348         C 0 T 19994
s aotNan1.NW_018494050v1       92989 16 -    285216 ATAGTCAGGGAACCCC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1478431 16 -   2232465 ATGGGCAAGGAAGCCC
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25850172 16 +  26524999 CTAGGGAgggcagccc
i canFam3.chr35            I 114 C 0
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=478640.000000
s hg38.chr6_GL000254v2_alt     81250 67 +   4827813 AGGACCAACTCTTCCTCCTCAGCAGGTGCCTGACCCTGGG-AC---TTCCTGAAACTTCTAGAGcagtgct
s panTro5.chr6              29051837 67 + 175400573 AGGACCAACTCTTCCTCCTCAGCAGGTGCCTGACCCTGGG-AC---TTCCTGAAACTTCTAGAGcagtgct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29295890 67 + 173848474 AGGACCAACTCTTCCTCCTCAGCAGGTGCCTGACCCTGGG-AC---TTCCTGAAACTTCTAGAGcagtgct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5095917 67 +   6154872 AGGACCAACTCTTCCTCCTCAGCAGGTGCCTGACCCTGGG-AC---TTCCTGAAACTTCTAGAGAagtgct
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29278637 67 + 172585720 AGGACCAACTCTTCCTCCTCAGCAGGTACCTGACCCTGGG-AC---CTTCCGAAACTTCTAGAGcattgct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28927411 67 - 170955103 AGGACCAACTCTTCCTCCTCAGCAGGTACCTGACCCTGGG-AC---CTTCCGAAACTTCTAGAGcattgct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1904827 67 -   2996164 AGGACCAACTCTTCCTCCTCAGCAGGTACCTGACCCTGGG-AC---CTTCTGAAACTTCTAGAGcagtgct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790030 67 -   2157725 AGGACCAACTCTTCCTCCTCAGCAGGTACCTGACCCTGGG-AC---CTTCTGAAACTTCTAGAGcagtgct
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28244346 67 -  71996105 AGTACCAACTCTTCCTCCTCAGCAGGTACCTGACCCTGGG-AC---CTTCTGAAACTTCTAGAGcagtgct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912414 67 +   2316924 AGGACCAACTCTTCCTCCTCAGCAGGTACCTGACCCTGGG-AC---CTTCTGAAACTTCTAGAGcagtgct
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1786972 67 -   3067355 AGGACCAATTCTTCCTCCTCAGCAGGTGCCTGACCCTGGG-AC---CTCCTGAAACTTCTAGAGcagtgct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171324176 70 - 171630274 AGGAGCAGCTCTTCCTCCTCAGCAGGTGCCTGGCTCTGGG-ACCTATTTCTGAACCCTCTAGATcagtgct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134285 68 -    375362 AGAAGCAACTCTTCCTCTTCAGCAGGTGCCTGCCCTT--C-ACATGCTTCTAAAACCTCTAAATCACTgct
i saiBol1.JH378348         T 19994 C 0
s aotNan1.NW_018494050v1       93005 70 -    285216 AGGAGCAGCTCTTCCTCCTCAGCAGGTGCCTGGCCCTGGG-ACCTCCTTCTGAAACCTCTAGATcagtgct
i aotNan1.NW_018494050v1   C 0 I 1
s otoGar3.GL873742           1478447 66 -   2232465 TGGAGCAACTCTTCCTTCTCAACACACACCTGGAGCTGAGCAT---ATCCTGAAACT--TAGACcagtgct
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25850188 14 +  26524999 agg-----------tggctcagcgg----------------------------------------------
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=6695.000000
s hg38.chr6_GL000254v2_alt     81317 1 +   4827813 t
s panTro5.chr6              29051904 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29295957 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5095984 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29278704 1 + 172585720 t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28927478 1 - 170955103 t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1904894 1 -   2996164 t
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790097 1 -   2157725 t
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28244413 1 -  71996105 t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912481 1 +   2316924 t
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1787039 1 -   3067355 t
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171324246 1 - 171630274 c
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1       93076 1 -    285216 t
i aotNan1.NW_018494050v1   I 1 C 0
s otoGar3.GL873742           1478513 1 -   2232465 t
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25850202 0 +  26524999 C
e saiBol1.JH378348            134353 0 -    375362 C
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=1115483.000000
s hg38.chr6_GL000254v2_alt     81318 152 +   4827813 cacaaactttagcatcagagtcacttgaaggcttattcaaacacaggaggctgagccccatccatactcagcagttctgattcaatagacctaaggttgggcctgaaatttATTATTCTGATTGCAGCACCCTAATC-CTCCACCCCTTGCTC
s panTro5.chr6              29051905 152 + 175400573 cacaaactttagcatcagagtcacttgaaggcttattcaaacacaggaggctgagccccatccatactcagcagttctgattcaatagacctaaggttgggcctgaaatttATTATTCTGATTGCAGCACCCTAATC-CTCCACCCCTTGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29295958 152 + 173848474 cacaaactttagcatcagagtcacttgaaggcttattcaaacacaggaggctgagccccatccatactcagcagttctgattcaatagacctaaggttgggcctgaaatttATTATTCTGATTGCAGCACCCTAATC-CTCCACCCCTTGCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5095985 152 +   6154872 cacaaactttagcatcagagtcacttgaaggcttattcaaacacaggaggctgagccccatccatactcagcagttctgattcaatagacctaaggttgggcctgaaatttATTATTCTGATTGCAGCACCCTAATC-CTCCACCCCTTGCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29278705 147 + 172585720 cgcaaactttagcatcagagtcgcttgagggcttattcaaacacaggaggctgagcc----ccatactcagcagttctgattcaacagacctaaggtt-ggcctgaaatttATTATTCTGCTTGCAGCACTCAAATC-CCCCACCCCTTGCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28927479 147 - 170955103 cgcaaactttagcatcagagtcgcttgagggcttattcaaacacaggaggctgagcc----ccatactcagcagttctgattcaacagacctaaggtt-ggcctgaaatttATTATTCTGCTTGCAGCACTCAAATC-CCCCACCCCTTGCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1904895 147 -   2996164 cgcaaactttagcatcagagtcgcttgagggcttattcaaacacaggaggctgagcc----ccatactcagcagttctgattcaacagacctaaggtt-ggcctgaaatttATTATTCTGCTTGCAGCACCCAAATC-CCCCACCCCTTGCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790098 147 -   2157725 cgcaaactttagcatcagagtcgcttgagggcttattcaaacacaggaggctgagcc----ccatactcagcagttctgattcaacagacctaaggtt-ggcctgaaatttATTATTCTGCTTGCAGCACCCAAATC-CCCCACCCCTTGCTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28244414 147 -  71996105 cgcaaactttagcatcagagtcacttgagggcttattcaaacacaggaggctgagcc----ccatactcagcagttctgattcaacagacctaaggtt-ggcctgaaatttATTATTCTGCTTGCAGCACCCAAATC-CCCCACCCTTTGCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912482 148 +   2316924 cgcaaactttagcatcagagtcgcttgagggcttattcaaacacaggaggctgagcc----ccatactcagcagttctgattcaacagacctaaggttgggcctgaaatttATTATTCTGCTTGCAGCACCCAAATC-CCCCACCCCTTGCTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1787040 147 -   3067355 cacaaactttagcatcagagtcactt-acggcttattcaaacacaggaggctgagcc----ccatactcagcagttctgattcaatagacctaaagttgggcctgaaatttgTTATTCTGCTTGCAGCACCCAAATC-CCCCACCCCTTGCTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171324247 146 - 171630274 --tcaactttagcatcagagtcacttgagggcttattcaaacacaggtggctgggcc----ccaccctcagcaattctgactccatagatctgcggtggggcctggaatttggcattcccaTGGTAGCACCCTAATC-CCTCACCCCTTGCTC
i calJac3.chr4             C 0 I 63
s saiBol1.JH378348            134353 148 -    375362 ctcaaacttcagcgtcagagtcacttgagggcttattcaaacacaggtggctgggcc----ccattctcagcaattctgattcgatacatctgctgtggggcctggaatttggcattccGCTGGTAACACCCTCATC-CCTCGCCCCTTACTC
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1       93077 145 -    285216 ---cagtttcagcatcacagtcacttgagggtttattcaaacacaggtggctgggcc----ccaccctcagcaattctgactccatagatctgaggtggggcctggaatttggcattcccaTGGTAGCACCCTAATC-CATCACCCCTTGCTC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1478514 148 -   2232465 ctcaaaccttagcataagcatcacttgagggtgtattaaaatacaggtctctgggct----ctaccctcataggttctgattcagtagat-taaagttgggtctggaatttggcatttTGCTCACAGTACCCTAATCTCTCCATTCCTTACTT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25850202 129 +  26524999 -------tttagcgccaccttcagcctagggcct----gatcccgggagg----gcc----tgatcct-ggagacccaggatcg--agacccaggattgagtcccaagtcgggctccctgcatggagcctgcttctc-cctctgcctgtgtc-
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=201466.000000
s hg38.chr6_GL000254v2_alt     81470 27 +   4827813 TCCTATGCAGTGTCCACTGTGGCTAAC
s panTro5.chr6              29052057 27 + 175400573 TCCTATGTAGTGTCCACTGTGGCTAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29296110 27 + 173848474 TCCTATGTAGTGTCCACTGTGGCTAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5096137 27 +   6154872 TCCTGTGCAGTGTCCACTGTGGCTAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29278852 27 + 172585720 TCCTGTGCAGTGTCCACTGTGGCTAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28927626 27 - 170955103 TCCTGTGCAGTGTCCACTGTGGCTAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1905042 27 -   2996164 TCCTGTGCAGTGTCCACTGTGGCTAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790245 27 -   2157725 TCCTGTGCAGTGTCCGCTGTGGCTAAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28244561 27 -  71996105 TCCTGTGCAGTGTCCACTGTGGCTAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912630 27 +   2316924 TCCTGTGCAGTGTCCACTGTGGCTAAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1787187 27 -   3067355 TCCTGTGCAGTGTCCACTGTGGCTAAC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            134501 27 -    375362 TCCTGTGCAGTATCCACTGTGACTAAC
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1       93222 27 -    285216 TCCTGTGCAGCATCCATGGTGGCTAAC
i aotNan1.NW_018494050v1   C 0 T 8953
s otoGar3.GL873742           1478662 27 -   2232465 TCCTGTGCAGTGTCCACTCTGGCTAAC
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25850331 19 +  26524999 tctgcttctctctcccccc--------
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171324393 63 - 171630274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=204059.000000
s hg38.chr6_GL000254v2_alt     81497 34 +   4827813 ATGCCACTGTTTGC---------CTGGAGAGAACCAATGGATA----
s panTro5.chr6              29052084 34 + 175400573 ATGCCACTGTTTGC---------CTGGAGAGAACCAATGGATA----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29296137 34 + 173848474 ATGCCACTGTTTGC---------CTGGAGAGAACCAATGGATA----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5096164 34 +   6154872 ATGCCACTGTTTGC---------CTGGAGAGAACCAATGGATA----
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29278879 34 + 172585720 ATGCCACCGTTTGC---------CTGCAGAAAACCAATGGATA----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28927653 34 - 170955103 ATGCCACCGTTTGC---------CTGCAGAAAACCAATGGATA----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1905069 34 -   2996164 ATGCCACCGTTTGC---------CTGGAGAAAACCAATGGATA----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790272 34 -   2157725 ATGCCACCGTTTGC---------CTGGAGAAAACCAATGGATA----
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28244588 34 -  71996105 ATGCCACCGTTTGC---------CTGGAGAAAACCAATGGATA----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912657 34 +   2316924 ATGCCACTGTTTGC---------CTGGAGAAAACCAATGGATA----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1787214 34 -   3067355 ATGCCACCGTTTGC---------CTGGAGAAAACCAATGGATA----
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            134528 43 -    375362 ATGCCACTATTTGCTTAAAGTGTCTGGAGAGGACCAGTGCATA----
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1478689 43 -   2232465 ATGCCACTGTTTGTTTAAAGTGCCTGAAGAGAACAAGTGGata----
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25850350 34 +  26524999 --acccccgtgtct---------ctcatgaata--aataaataaaat
i canFam3.chr35            C 0 C 0
e aotNan1.NW_018494050v1       93249 8953 -    285216 T
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171324393 63 - 171630274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=12441.000000
s hg38.chr6_GL000254v2_alt     81531 4 +   4827813 -CCAG
s panTro5.chr6              29052118 4 + 175400573 -CCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29296171 4 + 173848474 -CCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5096198 4 +   6154872 -CCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29278913 4 + 172585720 -TCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28927687 4 - 170955103 -TCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1905103 4 -   2996164 -TCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790306 4 -   2157725 -TCAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28244622 4 -  71996105 -TCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912691 4 +   2316924 -TCAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1787248 4 -   3067355 -TCAG
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25850384 2 +  26524999 ct---
i canFam3.chr35            C 0 C 0
e saiBol1.JH378348            134571 0 -    375362 C
e otoGar3.GL873742           1478732 0 -   2232465 C
e aotNan1.NW_018494050v1       93249 8953 -    285216 T
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171324393 63 - 171630274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=36746.000000
s hg38.chr6_GL000254v2_alt     81535 7 +   4827813 GAAATTA
s panTro5.chr6              29052122 7 + 175400573 GAAATTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29296175 7 + 173848474 GAAATTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5096202 7 +   6154872 GAAATTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29278917 7 + 172585720 GAAATTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28927691 7 - 170955103 GAAATTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1905107 7 -   2996164 GAAATTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790310 7 -   2157725 GAAATTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28244626 7 -  71996105 GAAATTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912695 7 +   2316924 GAAATTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1787252 7 -   3067355 GAAATTA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            134571 7 -    375362 GAAGGGG
i saiBol1.JH378348         C 0 C 0
s canFam3.chr35             25850386 3 +  26524999 ----tta
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1478732 0 -   2232465 C
e aotNan1.NW_018494050v1       93249 8953 -    285216 T
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171324393 63 - 171630274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=732502.000000
s hg38.chr6_GL000254v2_alt     81542 115 +   4827813 --AAGA-----AGAAAAAGTATGAAACAAAAAGAAAATACATGGCATGTGTGTATTACCTTCCTCCAAAA--AATGTGTCTCAAAACAAACATATGATTGGTC-------------TGGAGGCACACACACAGCCAG
s panTro5.chr6              29052129 115 + 175400573 --AAGA-----AGAAAAAGTATGAAACAAAAAGAAAATACATGGCATGTGTGTATTACCTTCCTCCAAAA--AATGTGTCTCAAAACAAACATATGATTGGTC-------------TGGAGGCACACACACAGCCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29296182 115 + 173848474 --AAGA-----AGAAAAAGTATGAAACAAAAAGAAAATACATGGCATGTGTGTATTACCTTCCTCCAAAA--AATGTGTCTCAAAACAAACATATGATTGGTC-------------TGGAGGCACACACACAGCCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5096209 112 +   6154872 --AAGA-----AGAAAAAGTATGAAACAAAAAGAAAATACATGGCATGTGTGTATTACCTTCCTTCAAAA--AATGTGTCTCAAAACA---ATATGATTGGTC-------------TGGAGGCACACACACAGCCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29278924 115 + 172585720 --AAGA-----AGAAAAAGTATGAAACAAAAAGAAAATACATGGCATGTGTGTATTACCTTCCTCCAAAA--AATGTATCTCAAAACAAACATATGATTGGTC-------------TGGAGGCACACACATGGCCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28927698 115 - 170955103 --AAGA-----AGAAAAAGTATGAAACAAAAAGAAAATACATGGCATGTGTGTATTACCTTCCTCCAAAA--AATGTATCTCAAAACAAACATATGATTGGTC-------------TGGAGGCACACACATGGCCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1905114 115 -   2996164 --AAGA-----AGAAAAAGTATGAAACAAAAAGAAAATACGTGGCATGTGTGTATTACCTTCCTCCAAAA--AATGTATCTCAAAACAAACATATGATTGGTC-------------TGGAGGCACACACACGGCCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790317 115 -   2157725 --AAGA-----AGAAAAAGTATGAAACAAAAAGAAAATACATGGCATGTGTGTATTACCTTCCTCCAAAA--ACTGTATCTCAAAACAAACATATGATTGGTC-------------TGGAGGCACACACACGGCCAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28244633 115 -  71996105 --AAGA-----AGAAAAAGTATGAAACAGAAAGAAAATACATGGCATGTGTGTATTACCTTCCTCCAAAA--AATGTATCTCAAAACAAACATATGATTGGTC-------------TGGAGGCACACACATGGCCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912702 115 +   2316924 --AAGA-----AGAAAAAGTATGAAACAAAAAGAAAATACATGGCATGTGTGTATTACCTTCCTCCAAAA--ACTGTATCTCAAAACAAACATATGATTGGTC-------------TGGAGGCACACACACGGCCAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1787259 115 -   3067355 --AAGA-----AGGAAATGTATGAAACAAAAAGAAAATACATGGCATGTGTGTATTACCTTCCTCCAAAA--AATATATCTCAAAACAAACATATGATTGGTC-------------TGGAGGCACATACACGGCCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171324456 127 - 171630274 --GGGA-----GAAATAAGTACGAAACGACAAGAAAATACGTGGCATGTCTGCCTTACCTTCCAGCAAAAACAATATATTTTATAACAAACATGTGATTGGCCGGCGGCGGGGGGAGGGGGA---GCGCACAGGAAA
i calJac3.chr4             I 63 C 0
s saiBol1.JH378348            134578 113 -    375362 --GGGG-----GGGGGAGGTATGAAACAACAAGAAAATACTTGGCACATCTG-CTTACCTTCCAGCAAAAACAATGTATTTTGTAACAAACATATGCTTGGCC-------------TGGGGG---GCGCACAGGCAA
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1478732  96 -   2232465 ------------------------atttaaaaatatatatatGGAATGCTTGCATTACTTTCCTCCAAAAAAAATGCATCCTGAAACAAATTTATAATTGCCC-------------TCAAGG----CACACAGCCAA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25850389 114 +  26524999 aaaaaaTGCCTAGAGAAAACAAGCAGATAACAGAACATACATGAAATGACAACATTATCTCCCTCCAAAA--AATGCATCCTATCACaaaga----attggcc-------------tcaggg----cacatggccag
i canFam3.chr35            C 0 C 0
e aotNan1.NW_018494050v1       93249 8953 -    285216 T
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=259680.000000
s hg38.chr6_GL000254v2_alt     81657 29 +   4827813 TCCTCAGCTAAGCAGGTTTC----ATCAGACAG
s panTro5.chr6              29052244 29 + 175400573 TCCTCAGCTAAGCAGGTTTC----ATCAGACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29296297 29 + 173848474 TCCTCAGCTAAGCAGGTTTC----ATCAGACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5096321 29 +   6154872 TCCTCAGCTAAGCAGGTTTC----ATCAGACAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29279039 29 + 172585720 TCCTCAGCTAAGCAGGTTTC----ACCAGACGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28927813 29 - 170955103 TCCTCAGCTAAGCAGGTTTC----ACCAGACGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1905229 29 -   2996164 TCCTCAGCTAAGCAGGTTTC----ACCAGACGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790432 29 -   2157725 ACCTCAGCTAAGCAGGTTTC----ACCAGACGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28244748 29 -  71996105 TCCTCAGCTAAGCAGATTTC----ACCAGACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912817 29 +   2316924 ACCTCAGCTAAGCAGGTTTC----ACCAGACGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1787374 29 -   3067355 TCCTCAGCTAAGCAGGTTTC----ACCAGATGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171324583 29 - 171630274 TCCTCAGCTAAGCAGGTTTC----ACCAGACAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            134691 29 -    375362 TCCTCAGCTAAGCAGGTTTC----ACCAGATAG
i saiBol1.JH378348         C 0 I 29948
s aotNan1.NW_018494050v1       84296 29 -    285216 TCCTCAGCTAAGCTGGTTTC----ACCCGACAA
i aotNan1.NW_018494050v1   T 8953 C 0
s otoGar3.GL873742           1478828 29 -   2232465 TCCTCAGCTAATTGGATTTC----ATCAGTTAT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25850503 33 +  26524999 tcagcagccaagcagatttctgaagccaggcag
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=464360.000000
s hg38.chr6_GL000254v2_alt     81686 52 +   4827813 TATCCCTCCTGGATGCTGGTTATAGAT-ATTCTCACTGGACAAAAGAATCAAG---
s panTro5.chr6              29052273 52 + 175400573 TATCCCTCCTGGATGCTGGTTATAGAT-ATTCTCACCGGACAAAAGAATCAAG---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29296326 52 + 173848474 TATCCCTCCTGGATGCTGGTTATAGAT-ATTCTCACCGGACAAAAGAATCAAG---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5096350 52 +   6154872 TATCCGTCCTGGATGCTGGTTATAGAT-ATTCTCACTGGACAAAAGAATCAAG---
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29279068 52 + 172585720 TATCCCTCCTGGATGCCGGTTATAGAT-ATTTTCATTGGACAAAAGAAGCAAG---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28927842 52 - 170955103 TATCCCTCCTGGATGCCGGTTATAGAT-ATTTTCATTGGACAAAAGAAGCAAG---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1905258 52 -   2996164 TATCCCTCCTGGATGCCGGTTATAGAT-ATTTTCATTGGACAAAAGAAGCAAG---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790461 52 -   2157725 TATCCCTCCTGGATGCCGGTTATAGAT-ATTTTCACCGGACAAAAGAAGCAAG---
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28244777 52 -  71996105 TACCCCTCCTGGATGCTGGTTATAGAT-ATTTTCACTGGACAAAAGAAGCAAG---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912846 52 +   2316924 TATCCCTCCTGGATGCCGGTTATAGAT-ATTTTCACTGGACAAAAGAAGCAAG---
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1787403 52 -   3067355 TATCCCTCCTGGATGCTGGTTATAGAC-ATTTTCACTGCACAAAAGAAGCAAG---
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171324612 52 - 171630274 TACCCCTCCTGGACGCTGGTTATGGAT-ATTTTCACTGGACAAAAGAATCAAG---
i calJac3.chr4             C 0 I 3
s saiBol1.JH378348            164668 52 -    375362 TATCCCTCCTGGATGCTGGTTATAGAC-ATTTTCACTGGATAAAAGCATCAAG---
i saiBol1.JH378348         I 29948 I 3
s aotNan1.NW_018494050v1       84325 52 -    285216 TATCCCTCTTGGATGCTGGTTATAGAT-ATCTTCACTGGACAAAAGAATCAAG---
i aotNan1.NW_018494050v1   C 0 I 18870
s otoGar3.GL873742           1478857 52 -   2232465 GATCTCTCCTGAATGCCTTTTGTGGAT-ATTTTCACTAGACAAGGGAATCAAG---
i otoGar3.GL873742         C 0 I 3
s canFam3.chr35             25850536 56 +  26524999 tccccctcccgagtgcctgctGTAGATAATTTTCACTGGAGAAAGGAACCTGGAAA
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=182947.000000
s hg38.chr6_GL000254v2_alt     81738 27 +   4827813 TAAGGTCATGT----TAGCCTCATAGAGTGT
s panTro5.chr6              29052325 27 + 175400573 TAAGGTCATGT----CAGCCTCATAGAGTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29296378 27 + 173848474 TAAGGTCATGT----CAGCCTCATAGAGTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5096402 27 +   6154872 TAAGGTCATGT----CAGCCTCATAGAGTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29279120 31 + 172585720 TAAGGTCATGTCAGCCAGCCTCATAGAGTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28927894 31 - 170955103 TAAGGTCATGTCAGCCAGCCTCATAGAGTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1905310 31 -   2996164 TAAGGTCATGTCAGCCAGCCTCATAGAGTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790513 27 -   2157725 TAAGGTCATAT----CAGCCTCATAGAGTGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28244829 27 -  71996105 TAAGGTCATGT----CAGCCTCATAGAGTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912898 27 +   2316924 TAAGGTCATAT----CAGCCTCATAGAGTGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1787455 27 -   3067355 TAAGGTCATGT----CAGCCTCATAGAGTGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171324667 27 - 171630274 TAAGGACATCC----CAGCCTGATACAGTGT
i calJac3.chr4             I 3 T 8359
s saiBol1.JH378348            164723 27 -    375362 TAAAGACATGC----TAGCCTGGTAGAGTGT
i saiBol1.JH378348         I 3 C 0
s otoGar3.GL873742           1478912 27 -   2232465 TAAGGACAATC----CAGCCTGATAAAGAGT
i otoGar3.GL873742         I 3 C 0
s canFam3.chr35             25850592 23 +  26524999 TAAGGACGTCC----CAGCCTGGTAGA----
i canFam3.chr35            C 0 C 0
e aotNan1.NW_018494050v1       84377 18870 -    285216 I
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=85742.000000
s hg38.chr6_GL000254v2_alt     81765 23 +   4827813 ATCTATCATGCCAGCCTGATAGG
s panTro5.chr6              29052352 23 + 175400573 ATCTATCATGCCAGCCTGATAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29296405 23 + 173848474 ATCTATCATGCCAGCCTGATAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5096429 22 +   6154872 ATCTACCATG-CAGCCTGATagg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29279151 23 + 172585720 ATCTATCATGCCAGCCTGATAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28927925 23 - 170955103 ATCTATCATGCCAGCCTGATAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1905341 23 -   2996164 ATCTATCATGCCAGCCTGATAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790540 23 -   2157725 ATCTATCATGCCAGCCTGATAGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28244856 22 -  71996105 ATCTATCATGCCA-CCTGATAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912925 23 +   2316924 ATCTATCATGCCAGCCTGATAGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1787482 23 -   3067355 ATCTATCATGCCAGCCTGAGAGG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            164750  4 -    375362 -----------TAGC--------
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1478939  6 -   2232465 -----------------GTTAGG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25850615  9 +  26524999 -----------CAG--TGAAAG-
i canFam3.chr35            C 0 C 0
e aotNan1.NW_018494050v1       84377 18870 -    285216 I
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171324694 8359 - 171630274 T
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=1102813.000000
s hg38.chr6_GL000254v2_alt     81788 155 +   4827813 Ctggtggactaggaacaaacatcatactctcttgcctctcaaagacactttaattcaataggaaa------tatgtacagagagaacagcagttttgaaaccatacaccgttggaaa--ccataaaaggtttcatg-agtgcat-aggatttcttgggagttccc
s panTro5.chr6              29052375 155 + 175400573 Ctggtggactaggaacaaacatcatactctcttgcctctcaaagacactttaattcaacaggaaa------tatgtacagagagaacagcagttttgaaaccatacaccattggaaa--ccataaaaggtttcatg-agtgcat-aggatttcttgggagttccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29296428 155 + 173848474 Ctggtggactaggaacaaacatcatactctcttgcctctcaaagacactttaattcaacaggaaa------tatgtacagagagaacagcagttttgaaaccatacaccgttggaaa--ccataaaaggtttcatg-agtgcat-aggatttcttgggagttccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5096451 154 +   6154872 -tggtggactaggaacaaacatcatactctcttgcctctcaaagacactttaattcaacaggaaa------tatgtacagagagaacagcagttttgaaaccatacaccgttggaaa--ccataaaaggtttcatg-agtgcat-aggatttcttgggagttccc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29279174 155 + 172585720 CTGGTGGACTAGGAACAAACGTCATACTCTCTTGCCTCTCAAAGACACGTTAATTCAACAGGAAA------TACGTGCAGAGAGAACAGCAGTTTTGAAATCATACATCACCGGAAA--CCCTAAAAGTTATCATG-AGTGTAT-AGGATTTCTTGGGAGTTCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28927948 155 - 170955103 CTGGTGGACTAGGAACAAACGTCATACTCTCTTGCCTCTCAAAGACACGTTAATTCAACAGGAAA------TACGTGCAGAGAGAACAGCAGTTTTGAAATCATACATCACCGGAAA--CCCTAAAAGTTATCATG-AGTGTAT-AGGATTTCTTGGGAGTTCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1905364 155 -   2996164 CTGGTGGACTAGGAACAAACGTCATACTCTCTTGCCTCTCAAAGACACCTTAATTCAACAGGAAA------TACGTGCAGAGAGAACAGCAGTTTTGAAATCATACATCACCGGAAA--CCCTAAAAGTTATCATG-AGTGTAT-AGGATTTCTTGGGAGTTCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790563 155 -   2157725 CTGGTGGACTAGGAACAAACGTCATACTCTCTTGCCTCTCAAAGACACTTTAATTCAACAGGAAA------TACGTGCAGAGAGAACAGCAGTTTTGAAATCATACATCACTGGAAA--CCCTAAAAGTTATCATG-GGTGTAT-AGGATTTCTTGAGAGTTCCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28244878 155 -  71996105 Ctggtgggctaggaacaaacgtcatactctcttgcctctcaaagacactttaatttaacaggaaa------tacgtacagagagaacagtagttttgaaatcatacatcactggaaa--ccctaaaaggtatcatg-agtgcat-aggatttcttgggagttccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1912948 155 +   2316924 CTGGTGGACTAGGAACAAAGGTCATACTCTCTTGCCTCTCAAAGACACTTTAATTCAACAGGAAA------TACGTGCAGAGAGAACAGCAGTTTTGAAATCATACATCACTGGAAA--CCCTAAAAGTTATCATG-GGTGTAT-AGGATTTCTTGGGAGTTCCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1787505 155 -   3067355 Ctggtggactaggaacaaacgtcatactctcttgcctctcaaagacactttaattcaacaggaaa------tacgtacagagagaacagcagtttggaaatcatacatcactggaaa--ccctaaaagatatcatg-agtgcat-aggatttcttgggagttccc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            164754 157 -    375362 CTGGTGGACTGGGAACAAACTTCCCACCCTCTTGCCTCTCAGAAACGCTTTAATTCAACAGCAAA------TATATGCAGAGAGAACAGCACTTTGCAATCCATACACCATTGGAAACCCCTCCAAAGGTACCATG-AGTGCAT-AGGATTTCTTGGGAGTTTCA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      103247 155 -    285216 CTGGTGGACTCGGAACAAACTTCCTCCCCTCTTGCCTCTCAGAGACACTTTAATTCAACAGCAAA------TATGTTCAGAGGGAACAGCACTTTGGAAACCACACACCATTGGAAA--CCTTCAAAGGTACCATG-AGTGCGT-AGGATTTCTTGGGAGTTCCA
i aotNan1.NW_018494050v1   I 18870 C 0
s otoGar3.GL873742           1478945 161 -   2232465 CTGGAGGATTGCGAATAACCACTGTTTTGTGTTACCTCCGGAAGACA--TCAGTTTAATGGCAAAAGCACGTATGTACATAGATAACAACAGTTTtgaaaccataaagcaatggaaa--tccttagaaatgctattcagtggatcagaaattcttagcactttcc
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25850624 142 +  26524999 -TGACAAGCTGGAAACAAATTTCATT--------CCTCTTAGAGACACTTTGATCCAACAGGAAA------TAAGGACATAGATAATAGCAGTTTTGAAACCACAAAGCACTGGAAT-TTCTTAAAAGATGCTGTA------AT-Aggggtgcctgggtggctcc
i canFam3.chr35            C 0 I 639
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171324694 8359 - 171630274 T
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=332558.000000
s hg38.chr6_GL000254v2_alt     81943 57 +   4827813 tctccaa--aaaaagc-gatgtaatcaggtggatcgagaaaGAAC--ATGAAATGTTTGTTT
s panTro5.chr6              29052530 57 + 175400573 tctctaa--aaaaagc-gatgtaatcaggtggatcgagaaaGAAC--ATGAAATGTTTGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29296583 57 + 173848474 tctctaa--aaaaagc-gatgtaatcaggtggatcgagaaaGAAC--ATGAAATGTTTGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5096605 57 +   6154872 tctccaa--aaaaagc-gatgtaatcaggtggatcgagaaaGAAC--ATGAAATGTTTGTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29279329 58 + 172585720 TCTCCAA--ACAAAGCAGATGTAATCTGATGGATCGAGAAAGAAC--ATGAAATGTTTGTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28928103 58 - 170955103 TCTCCAA--ACAAAGCAGATGTAATCTGATGGATCGAGAAAGAAC--ATGAAATGTTTGTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1905519 58 -   2996164 TCTCCAA--ACAAAGCAGATGTAATCTGATGGATCGAGAAAGAAC--ATGAAATGTTTGTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790718 58 -   2157725 TCTCCAA--AAAAAGCAGATGTAATCAGATGGATCAAGAAAGAAC--ATGAAATGTTTACCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28245033 58 -  71996105 tctccaa--aaaaagcagatgtaatcagatggatcgagaaaGAAC--ATGAAATGTTTGTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913103 58 +   2316924 TCTCCAA--AAAAAGCAGATGTAATCAGATGGATTGAGAAAGAAC--ATGAAATGTTTATCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1787660 58 -   3067355 tctccaa--aaaaagcagatgtaatcagatggatcgagaaaGAAC--ATGAAAAGTTTGTCT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            164911 32 -    375362 TATTCAA----------------------------GAAAAAAAAA--ATGAAATGTTTGTTT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      103402 60 -    285216 TCTTCAAAAAAAAAGCAGATGTAATCAGATGAATCGAAAAAAACC--ATGAAATGTTTGCTT
i aotNan1.NW_018494050v1   C 0 I 10
s otoGar3.GL873742           1479106 59 -   2232465 tgt-cat--acgaagcagatgtaatcagattgaatgagaaagaacagaggaaaTGTATGTTT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25850766 639 +  26524999 I
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171324694 8359 - 171630274 T
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=75049.000000
s hg38.chr6_GL000254v2_alt     82000 15 +   4827813 GTTTTTTCCCAAGGC
s panTro5.chr6              29052587 15 + 175400573 GTTTTTTCCCAAGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29296640 15 + 173848474 GTTTTTTCCCAAGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5096662 15 +   6154872 GTTTTTTCCCAAGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29279387 15 + 172585720 GGTTTTTCCCACGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28928161 15 - 170955103 GGTTTTTCCCACGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1905577 15 -   2996164 GGTTTTTCCCACGGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790776 15 -   2157725 GGTTTTTCCCACGGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28245091 15 -  71996105 GGTTTTTCCCACGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913161 15 +   2316924 GGTTTTTCCCACGGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1787718 15 -   3067355 GGTTTTTCCCAGGGC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            164943 15 -    375362 GCTTTTTTCCACCAG
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1479165 14 -   2232465 -GTTTGTTTTACGGA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25850766 639 +  26524999 I
e aotNan1.NW_018494050v1      103462 10 -    285216 I
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171324694 8359 - 171630274 T
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=15795.000000
s hg38.chr6_GL000254v2_alt     82015 2 +   4827813 AG
s panTro5.chr6              29052602 2 + 175400573 AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29296655 2 + 173848474 AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5096677 2 +   6154872 AG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29279402 2 + 172585720 AG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28928176 2 - 170955103 AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1905592 2 -   2996164 AG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790791 2 -   2157725 AG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28245106 2 -  71996105 AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913176 2 +   2316924 AG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1787733 2 -   3067355 AG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            164958 2 -    375362 AG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      103472 2 -    285216 AG
i aotNan1.NW_018494050v1   I 10 C 0
s otoGar3.GL873742           1479179 2 -   2232465 GG
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25850766 639 +  26524999 I
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171324694 8359 - 171630274 T
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=49329.000000
s hg38.chr6_GL000254v2_alt     82017 7 +   4827813 GAAGTGC
s panTro5.chr6              29052604 7 + 175400573 GAAGTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29296657 7 + 173848474 GAAGTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5096679 7 +   6154872 GAAGTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29279404 7 + 172585720 CAAGTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28928178 7 - 170955103 CAAGTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1905594 7 -   2996164 CAAGTGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790793 7 -   2157725 GAAGTGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28245108 7 -  71996105 GAAGTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913178 7 +   2316924 GAAGTGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1787735 7 -   3067355 GAAGTGC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            164960 7 -    375362 GAAGTGC
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      103474 7 -    285216 GAGGCGC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479181 7 -   2232465 AAAGTGC
i otoGar3.GL873742         C 0 I 1
s canFam3.chr35             25851405 7 +  26524999 GAGACAT
i canFam3.chr35            I 639 C 0
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171324694 8359 - 171630274 T
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=1064350.000000
s hg38.chr6_GL000254v2_alt     82024 129 +   4827813 CCAACACACCTGCGATCTACTTATCTTTTAGTCTGCATGTATTTTGCATTGTGACAG-AAAACCTTTTCCTAGTTTTTCATATGG--GGCCTCCGTTTGCTCTTACCAGAAGTTCCCAGGCAATATTTTATT
s panTro5.chr6              29052611 129 + 175400573 CCAACACACCTGCGATCTACTTATCTTTTAGTCTGCATGTATTTTGCATTGTGACAG-AAAACCTTTTCCTAGTTTTTCATATGG--GGCCTCTGTTTGCTCTTACCAGAAGTTCCCAGGCAATATTTTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29296664 129 + 173848474 CCAACACACCTGCGATCTACTTATCTTTTAGTCTGCATGTATTTTGCATTGTGACAG-AAAACCTTTTCCTAGTTTTTCATATGG--GGCCTCTGTTTGCTCTTACCAGAAGTTCCCAGGCAATATTTTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5096686 129 +   6154872 CCAACACACCTGCGATCTACTTATCTTTTAGTCTGCATGTATTTTGCATTATGACGG-AAAACCTTTTCCTAGTTTTTCATATGG--GGCCTCCGTTTGCTCTTACCAGAAGTTCCCAGGCAATATTTTATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29279411 129 + 172585720 CGAACACACCTGCGATCTACTTACCTTTTAGTCTGCATGTATTTTCCATTGTGACAG-AAAATCTTTTCCTAGTTTTTTATATGG--GGCCTCCGTTTGCTGTTACCAGAAGTTCCCGGGCAATATTTTACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28928185 129 - 170955103 CGAACACACCTGCGATCTACTTACCTTTTAGTCTGCATGTATTTTCCATTGTGACAG-AAAATCTTTTCCTAGTTTTTTATATGG--GGCCTCCGTTTGCTGTTACCAGAAGTTCCCGGGCAATATTTTACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1905601 129 -   2996164 CGAACACACCTGCGATCTACTTACCTTTTAGTCTGCATGTATTTTCCATTGTGACAG-AAAATCTTTTCCTAGTTTTTTATATGG--GGCCTCCGTTTGCTGTTACCAGAAGTTCCCGGGCAATATTTTACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790800 129 -   2157725 TGAACACACCTGCGATCTACTTACCTTTTAGTCTACATGTATTTTCCACTGTGACAG-AAAATCTTTTCCTAGTTTTTTATATGG--GGCCTCCGTTTGCTGTTACCAGAAGTTCCCAGGCAATATTTTATT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28245115 129 -  71996105 CGAACACACCTGTGATCTACTTACCTTTTAGTCTGCATGTATTTTCCACTGTGACAG-AAAATCTTTTCCTAGTTTTTTATATGG--GGCCTCCGTTTGCTGTTACCAGAAGTTCCCAGGCAATATTTTATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913185 129 +   2316924 TGAACACACCTGCGATCTACTTACCTTTTAGTCTACATGTATTTTCCACTGTGACAG-AAAATCTTTTCCTAGTTTTTTATATGG--GGCCTCCGTTTGCTGTTACCAGAAGTTCCCAGGCAATATTTTATT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1787742 129 -   3067355 CGAATACACTTGTGATCTACTTACCTTTTAGTCTGCATGTATTTTCCATCGTGACAG-AAAATCTTTTCCTAGTTTTTTATATGG--GGCCCCCGTTTGCTGTTACCAGAAGTTCCCAGGCAATATTTTATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171316335 129 - 171630274 CCAATACACCTGTAATTTACTCACCTTTTACTCTGCATCTGTTTTCCATCATGACAG-AAAAGTTTGCTCTACTTTTTCATATGG--GGCCTCTGTTTGCTCTTAACAGAGGTTTCCAGGAAATGttttatt
i calJac3.chr4             T 8359 I 8583
s saiBol1.JH378348            164967 129 -    375362 CCAGCCCACCTGTGATCTACTCACATGTTACTCTACATGTATTTTCCATCGTCACAG-AAAACCTTTTCCTACTTTTTCGTGTGG--GGCCTCTATTTGCTGTTACCAGAAGTACCCAGGCAATGTTTTATT
i saiBol1.JH378348         C 0 I 1
s aotNan1.NW_018494050v1      103481 129 -    285216 CCAGCCCACCTGCGATCCACTCACCTGTTACTCTGCATGTATGTTCTATTGTGACAG-AAAATCTTTTCCTACTTTTTCGTGTGG--GGCCTCCGTTTGCTGTTACCAGAAGTACCCAGGCAATGTTTTATT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479189 124 -   2232465 CTAA--CACCTGCTATTTACTCACCTTTTACTTTGCGGCCGTTTTCTACTGTGACAG-AAAACTTTTTCTTGCTTCTTCATTTGGGAGGCCTAGGTTCGC-ATTAAAAGAGGTTTCC----AATATTTTTAT
i otoGar3.GL873742         I 1 I 1
s canFam3.chr35             25851412 124 +  26524999 CCAACACACCTGTAATGT-------CTTTGCTTTGCGTCTCTTTCCCATTGTGACAGAAAAACCTCTTCCTACCTCTTCGTGTGGG-GGCCTTCATTTGATGGTAACTGAGATTTGCAGGCAGTGTTTTATT
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=109296.000000
s hg38.chr6_GL000254v2_alt     82153 18 +   4827813 ------------GTAAAGAGGAAAATGGAG
s panTro5.chr6              29052740 18 + 175400573 ------------GTAAAGAGGAAAATGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29296793 18 + 173848474 ------------GTAAAGAGGAAAATGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5096815 18 +   6154872 ------------GTAAAGAGGAAAATGGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29279540 18 + 172585720 ------------GTAACGAGAAAAACGGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28928314 18 - 170955103 ------------GTAACGAGAAAAACGGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1905730 18 -   2996164 ------------GTAACGAGAAAAACGGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790929 18 -   2157725 ------------GTAACGAGAAAAACGGAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28245244 18 -  71996105 ------------GTAACGAGGAAAACGGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913314 18 +   2316924 ------------GTAACGAGAAAAACGGAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1787871 18 -   3067355 ------------GTAACGAGGAAAACGGAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            165097 17 -    375362 ------------TTATC-AGGAAAATGGAG
i saiBol1.JH378348         I 1 C 0
s aotNan1.NW_018494050v1      103610 18 -    285216 ------------TTATCGAGGAAAATGGAG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479314 18 -   2232465 ------------TTAATGATGAAAATGAAG
i otoGar3.GL873742         I 1 C 0
s canFam3.chr35             25851536 30 +  26524999 GAAAGATTTGAAATGATAGTGAAAACAGGA
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171316464 8583 - 171630274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=909559.000000
s hg38.chr6_GL000254v2_alt     82171 125 +   4827813 TGACTGAGGAAATACAGGAATACAAATCAGTCTTATGGAACATCAGTAGGGAAT--GT--TGATCCGTATTGGTTTCTGCTTCTCGCACGTT-------GAAGGCCTCTAATTCCCCGACAGTCTTCGTGTGGTTA
s panTro5.chr6              29052758 125 + 175400573 TGACTGAGGAAATACAGGAATACAAATCAGTCTTATGGAATATCAGTAGGGAAT--GT--TGATCCGTATTGGTTTCTGCTTCTCGCACGTT-------GAAGGCCTCTAATTCCCCGACAGTCTTCGTGTGGTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29296811 125 + 173848474 TGACTGAGGAAATACAGGAATACAAATCAGTCTTATGGAATATCAGTAGGGAAT--GT--TGATCCGTATTGGTTTCTGCTTCTCGCACGTT-------GAAGGCCTCTAATTCCCCGACAGTCTTCGTGTGGTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5096833 125 +   6154872 TGACTGAGGAAATACAGGAATACAAATCAGTCTTATGGAATATCAGTAGGGAAA--GT--TGATCCGTATTGGTTTCTGCTTCTCGCACGTT-------GAAGGCCTCTAATTCTCCGACAGTCTTCGTGTGGTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29279558 125 + 172585720 CTACTGAGGAAATACAGGAATACAAATTAGTCTTATGGAATATCAGTACGGAAT--GT--TGATCCGTATTGGTTTCTGCTCCTCGCACGTT-------GAAGGCCTCTAATTCCCCTACAGTCTTCGTTCGGTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28928332 125 - 170955103 CTACTGAGGAAATACAGGAATACAAATTAGTCTTATGGAATATCAGTACGGAAT--GT--TGATCCGTATTGGTTTCTGCTCCTCGCACGTT-------GAAGGCCTCTAATTCCCCTACAGTCTTCGTTCGGTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1905748 125 -   2996164 CTACTGAGGAAATACAGGAATACAAATTAGTCTTATGGAATATCAGTACGGAAT--GT--TGATCCGTATTGGTTTCTGCTCCTCGCACGTT-------GAAGGCCTCTAATTCCCCTACAGTCTTCGTTCGGTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1790947 125 -   2157725 TGACTGAGGAAATACAGGAATACAAATTAGTCTTATGGAATATCAGTACGGAAT--GT--TGATCCGTATTGGTTTCTGCTCTTCGCACGTT-------GAAGGCCTCTAATTCCCCTACAGTCTTCGTTCGATTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28245262 125 -  71996105 TGGCTGAGGAAATACAGGAATACAAATCAATCTTATGGAATATCAGTACGGAAT--GT--TGATCCGTATTGGTTTCTGCTCCTCGCACGTT-------GAAGGCCTCTAATTCCCCTATAGTCTTCGTTCCGTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913332 125 +   2316924 TGACTGAGGAAATACAGGAATACAAATTAGTCTTATGGAATATCAGTACGGAAT--GT--TGATCCGTATTGGTTTCTGCTCTTCGCACGTT-------GAAGGCCTCTAATTCCCCTACAGTCTTCGTTCGATTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1787889 125 -   3067355 TGGCTGAGGAAATACAGGAATACAAATCAGTCTTATGGAATATTAGTACGGAAT--GC--TGATCCGTATTGGTTTCTGCTTCTCGCACGTT-------GAAGGCCTCTAATTCCCCTATGGTCTTCGTTCGGTTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171325047 124 - 171630274 TGGCTGAGGAAATACAGGAAAGTGAATCAACTGTATGGAATATCAGCAGGGAGC--GT--TACTCCGTGTCGGTTTCTGCCTCTCGCATGTC-------GAAGG-CTCTGATTTCCCCGCAGTCTTCGGTCGGCTG
i calJac3.chr4             I 8583 C 0
s saiBol1.JH378348            165114 118 -    375362 TGGCTGAAGAAATACGGTAATATGAGTCAGTCTTATGGAACATCAGTAGGGAAT--GT--TGATCCGTGTTGGTTTCTGCCCCTGCCATGTT-------GCAGG-CTCTAATTCCCCGGCAGTC------CGGTTG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      103628 124 -    285216 TGGCTGAGGAAATATGGTAATATGAGTCAGTCTTACGGAATATCAGTAGGGAAT--GT--TGGTCCGTGTTGGTTTCTGCCCCTCGCATGTC-------GCAGC-CTCTGATTCCCCGGCAGTCTTCGTTCGGTTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479332 118 -   2232465 TGATTGAGGAAATA--------------AATCCTATAGAATATCAATTGATAAT--GTGCTGATCTGTATTTATCTCCTCTTTTAATACTTTCGTATTGGAAGTCCTCCAGTTTCCCGAAAGATTTCGTTC--TTG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25851566  86 +  26524999 TGAGTGAAGTAATATAGGGA----AATGGACGTTATGGAATATCAATTGAGAATGGGT--TGATAAGTATTTCTTTCTTTCCCAGGTGGGGT--------------------------------------------
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e nomLeu3.chr1a             74098750 4089 + 122973662 M

a score=730267.000000
s hg38.chr6_GL000254v2_alt     82296 92 +   4827813 TCCAGCGCCCTGCCACTCCCATCTCAAGCGACTGGAGAGCCACAGC---CCTTGTCTCAGTACTGGATCACACTGGTAGCTGTGTTCTCCGCGCA
s panTro5.chr6              29052883 92 + 175400573 TCCAGCGCCCTGCCACTCCCATCTCAAGCGACTGGAGAGCCACAGC---CCTTGTCTCAGTACTGGATCACACTGGTAGCTGTGTTCTCCGCGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29296936 92 + 173848474 TCCAGCGCCCTGCCACTCCCATCTCAAGCGACTGGAGAGCCACAGC---CCTTGTCTCAGTACTGGATCACACTGGTAGCTGTGTTCTCCGCGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5096958 92 +   6154872 TCCAGCGCCCTGCCACTCCCATCTCAAGCGACTGGAGAGCCACAGC---CCTTGTCTCAGTACTGGATCACACTGGTAGCTGTGTTCTCTGCGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74102839 84 + 122973662 TCGAGCGTCCTGCCACTCCCATCTCAAGCGACTGGAGAGCCACAGCAGTCCTTATC-----------TCACACTGGTGGCTGTGCTGTCTGCGCA
i nomLeu3.chr1a            M 4089 C 0
s rheMac8.chr4              29279683 95 + 172585720 TCCAGCGTCCTGCCACTCCAATCTCAAGCGGCTGGAGAGCCACAGCAGTCCTTGTCTCAGTACCGGATCACACTGGTGGCTGCGCTCTCTGCTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28928457 95 - 170955103 TCCAGCGTCCTGCCACTCCAATCTCAAGCGGCTGGAGAGCCACAGCAGTCCTTGTCTCAGTACCGGATCACACTGGTGGCTGCGCTCTCTGCTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1905873 95 -   2996164 TCCAGCGTCCTGCCACTCCAATCTCAAGCGGCTGGAGAGCCACAGCAGTCCTTGTCTCAGTACCGGATCACACTGGTGGCTGCGCTCTCTGCTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1791072 95 -   2157725 TCCAGCGTCCTGCCACTCCAATCTCAAGCGGCTGGAGAGCCACAGCAGACCTTGTCTCAGTACCGGATCACACTGGTGGCTGCGCTCTCTGCTCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28245387 95 -  71996105 TCCAGCGTCCTGCCACTCCCATCTCAAGCGGCTGGAGAGCCACAGCAGTCCTTGTCTCAGTACCGGATCACACTGGTGGCTGCGCTCTCTGCTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913457 95 +   2316924 TCCAGCGTCCTGCCACTCCAATCTCAAGCGGCTGGAGAGCCACAGCAGACCTTGTCTCAGTACCGGATCACACTGGTGGCTGCGCTCTCTGCTCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1788014 93 -   3067355 TCCAGTGTCCTGCCATTCCCATCTCAAGCGGCTGGAGAGCCACAGCAG--CTTGTCTCAGTACCGGATCACACTGGTGGCTGCGCTCTCTGCTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171325171 92 - 171630274 CGCGGCGTCCT--CCCCTCCATCTCCAGCGGCTGGAGAGCCGG-GCAGTCCCTGGCTTAGGACCGGATCGCACCTGCGGCTGCGCTGTCTGCGCA
i calJac3.chr4             C 0 T 8253
s saiBol1.JH378348            165232 93 -    375362 TCCAGCGTCCTTCCCCTCCCATCTCCAGCGGCTGGAGAGCCAC-GCAGTCCCTGTCTCAGCACTGGATCACACTTGTGTCTG-GCTCTCTGCGCA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      103752 91 -    285216 TGCGGCGTCCT-CCCCTCCCATTTCCAGCGGCTGGAGAGCCAC-GCAGTCCCTGTCTCAGCACT-GATCGCACTTGTGTCTG-GCTCTCTGCGCA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479450 93 -   2232465 TCCGGCCTCCTGCCACTC--ATCTAAAACGACTCGCGATCCACAGCAGTCCTCCTCTCAGTATTGGATCAAACTTTGGGCTGCGCTCTCTGTTCA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25851652 46 +  26524999 ---------------------------------------CCAC--CACTCACTGTCCCA--------CTGAGCTGTTGATGGCCCTCTCCATTCA
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      150456 6599 -    373274 I

a score=640657.000000
s hg38.chr6_GL000254v2_alt     82388 79 +   4827813 GGTAGACAG-GG-----AGAGACTGGTGGAGAAATCAGTGAA---CAGAGGCTTTCGCTCTGTTCTTTGGCCCAGAAAACAAAAATAA
s panTro5.chr6              29052975 79 + 175400573 GGTAGACAG-GG-----AGAGACTGGTGGAGAAATCAGTGAA---CAGAGGCTTTCGCTCTGTTCTTTGGCCCAGAAAACAAAAATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29297028 79 + 173848474 GGTAGACAG-GG-----AGAGACTGGTGGAGAAATCAGTGAA---CAGAGGCTTTCGCTCTGTTCTTTGGCCCAGAAAACAAAAATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5097050 79 +   6154872 GGTAGACAG-GG-----AGAGACTGGTGGAGAAATCAGTGAA---CAGAGGCTTTCGCTCTGTTCTTTGGCCCAGAAAACAAAAATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74102923 79 + 122973662 GGTAGACAG-GG-----AGAGACTGCTGGAAAAATCAGTGGA---CAGAGGTTTTCGGTCTGTTCTTTGGACCAGAAAACAAAAATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29279778 79 + 172585720 GGTCGACAA-GG-----AGAGACTGGTGGAGAAATCAGTGGA---CAGAGGCTTTCGCTCTGTTCTTTAACCCAGAAAACAAAAATAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28928552 79 - 170955103 GGTCGACAA-GG-----AGAGACTGGTGGAGAAATCAGTGGA---CAGAGGCTTTCGCTCTGTTCTTTAACCCAGAAAACAAAAATAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1905968 79 -   2996164 GGTCGACAA-GG-----AGAGACTGGTGGAGAAATCAGTGGA---CAGAGGCTTTCGCTCTGTTCTTTAACCCAGAAAACAAAAATAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1791167 79 -   2157725 GGTCAACAA-GG-----AGAGACCGGTGGAGAAATCAGTGGA---CAGAGGCGTTCGCTCTGTTCTTTAACCCAGaaaacaaaaataa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28245482 79 -  71996105 GGTTGACAA-GG-----CGACACTGGTGGAGAAACCAGTGGA---CAGAGGCTTTCGCTCTCTTCTTTAACCCAGAAAACAAAAATAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913552 79 +   2316924 TGTCAACAA-GG-----AGAGACCGGTGGAGAAATCAGTGGA---CAGAGGCTTTCGCTCTGTTCTTTAACCCAGaaaacaaaaataa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1788107 79 -   3067355 GGTCAACAA-GG-----AGAGACTGGTGGAGAAATCAGTGGA---CAGAGGCTTTCGCTCTGTTCTTTAACCCAGAAAACAAAAATAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171317010 67 - 171630274 -----------------GGTGGCCGGGAGATAAATCCGGGCA---CAGATGCTTTGCCTCTG-GATTTGGTTCAGAAAACAAAAATAA
i calJac3.chr4             T 8253 I 8450
s saiBol1.JH378348            165325 58 -    375362 ------------------------GGTGGAGAAATCAGTGGA---CGGATGCTTTCGCTCTG---TTTCGCCCAGAAAACACAAATAA
i saiBol1.JH378348         C 0 I 4
s aotNan1.NW_018494050v1      103843 61 -    285216 ------------------------GATGGAGAAATCAGTGGA---CAGATGCTTTCACTCCGTTCTTCGGCCCAGaaaacaaaaataa
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479543 80 -   2232465 GGTCGACAAGGG-----AGAGACTGCTGGAGAAATCAGTGGA---CAAATGCTTTCGCTTTGTTCTTTGGCCCAGAAAACAAAAAGAA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25851698 77 +  26524999 ----------GGTCCTTGGGTCCTGAAAGGGCAGCCAGTGAGGTTCTGCTGCTTTCATTTTG-TCTTTGGCCCAGAAAACAAGAAGAA
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      150456 6599 -    373274 I

a score=82472.000000
s hg38.chr6_GL000254v2_alt     82467 24 +   4827813 CTT------AAAAAAAA-ATAGATGCCTTCA
s panTro5.chr6              29053054 23 + 175400573 CTT------AAAAAAAA--TAGATGCCTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29297107 24 + 173848474 CTT------AAAAAAAA-ATAGATGCCTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5097129 24 +   6154872 CTT------AAAAAAAA-ATAGATGCCTTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74103002 24 + 122973662 CTT------AAAAAAAA-ATAGATGCCTTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29279857 27 + 172585720 CTT---TAAAAAAAAAA-ATTGATGCCTGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28928631 27 - 170955103 CTT---AAAAAAAAAAA-ATTGATGCCTGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1906047 27 -   2996164 CTT---TAAAAAAAAAA-ATTGATGCCTGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1791246 30 -   2157725 cttaaaaaaaaaaaaaa-aTAGATGCCTGCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28245561 23 -  71996105 CTT---TAAAAAACAAA-----ATGCCTGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913631 28 +   2316924 ctt---aaaaaaaaaaaaaTAGATGCCTGCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1788186 26 -   3067355 CTT----AAAAAAAAAA-ATAGATGCCTGCA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            165387 14 -    375362 TTT---AA--------------ATGCCCGCG
i saiBol1.JH378348         I 4 C 0
s aotNan1.NW_018494050v1      103904 27 -    285216 ctt---aaaaaaaaaaa-aaaGATGGCCGCG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479623 19 -   2232465 -------CGAAAGGAAC-----GTGTTAGCG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25851775 18 +  26524999 --------CTAAAGAAA-----ATGCAGGTA
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      150456 6599 -    373274 I
e calJac3.chr4             171317077 8450 - 171630274 I

a score=1301088.000000
s hg38.chr6_GL000254v2_alt     82491 133 +   4827813 GGGCGCTTTTCTCC---CTTCTCCTTTGTCTTTGCGTCTCATTAATCATAGTACAAAATGGGAG---------TGAAAGCGAGCCGCCTGTGAATGTGCACGCTTTTGTTTGGGTTCAAGAGACCGTGTTGC--GATCCCGTTCTTC
s panTro5.chr6              29053077 133 + 175400573 GGGCGCTTTTCTCC---CTTCTCCTTTGTCTTTGCGTCTCATTAATCATAGTACAAAATGGGAG---------TGAACGCGAGCCGCCTGTGAATGTGCACGCTTTTGTTTGGGTTCAAGAGACCGTGTTGC--GATCCCGTTCTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29297131 133 + 173848474 GGGCGCTTTTCTCC---CTTCTCCTTTGTCTTTGCGTCTCATTAATCATAGTACAAAATGGGAG---------TGAACGCGAGCCGCCTGTGAATGTGCACGCTTTTGTTTGGGTTCAAGAGACCGTGTTGC--GATCCCGTTCTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5097153 133 +   6154872 GGGGGCTTTTCTCC---CTTCCCCTTCGTCTTTGCGTCTCATTAATCATAGTACAAAATAGGAG---------TGAATGCGAGCCGCCTGTGAATGTGCACGCTTTTGTTTGGGTTCAAGAGACCGTGTTGC--GATCCCGTTCTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74103026 136 + 122973662 GGGCGCTTTTCTCCCTTCTTCTCCTTTGTCTTCGCGTCTCTTTAATCATAGTACAAAATGGGAG---------CGAACGCGAGCCGCCTGTGAAAGTGCACGCTTTTGTTTGGGTTCAAGAGACCCTGTTGC--CATCCCGTTCTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29279884 136 + 172585720 GAGCGCTTTTCTTCCTTCTTCTCCTTTGTCTTGGCGTCTCTTTAATCATAGTACAAAATGGGAG---------CGAACGCGAGCCGCCTGTGAATGTGCACGCTTTTGTTTGGTTTCCAGAGACCCTGTTGC--GATTCTGTTCTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28928658 136 - 170955103 GAGCGCTTTTCTTCCTTCTTCTCCTTTGTCTTGGCGTCTCTTTAATCATAGTACAAAATGGGAG---------CGAACGCGAGCCGCCTGTGAATGTGCACGCTTTTGTTTGGTTTCCAGAGACCCTGTTGC--GATTCTGTTCTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1906074 136 -   2996164 GAGCGCTTTTCTTCCTTCTTCTCCTTTGTCTTGGCGTCTCTTTAATCATAGTACATAATGGGAG---------CGAACGCGAGCCGCCTGTAAATGTGCACGCTTTTGTTTGGTTTCCAGAGACCCTGTTGC--GATTCTGTTCTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1791276 136 -   2157725 GAGCGCTTTTCTTCCTTCTTCTCCTTTGTCTTGGCGTCTCTTTAATCATAGTACAAAATGGGAG---------GGAACGCGAGCCGCCTGTGAATGTGCACGCTTTTGTTTGGTTTCCAGAGACCCTGTTGC--GATTCCGTTCTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28245584 136 -  71996105 GAGCGCTTTTCTTCCTTCTTCTCCTTTGTCTTGGCGTCTCTTTAATCATAGTACAAAATGGGAG---------CGAACGCGAGCCGCCTGTGAATGTGCACGCTTTTGTTTGGTTTCCAGAGACCCTGTTGC--AAttccgttcttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913659 136 +   2316924 GAGCGCTTTTCTTCCTTCTTCTCCTTTGTCTTGGCGTCTCTTTAATCATAGTACAAAATGGGAG---------GGAACGCGAGCCGCCTGTGAATGTGCACGCTTTTGTTTGGTTTCCAGAGACCCTGTTGC--GATTCCGTTCTTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1788212 136 -   3067355 GAGCGCTTTTCTTCCTTCTTCTCCTTTGTCTTGGCGTCTCCTTAATCATAGTACAAAATGGGAG---------CGAATGCGAGCCGCCTGTGAATGTGCACGCTTTTGTTTGGTTTCCAGAGACCCTGTTGC--GATTCCGTTCTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171325527 133 - 171630274 GGGCTCTTTTCTCC---CTCCTTCTTCGTCTTTTCATCTCTTTAATCATAGCACAAAATGAGAG---------CGAATGTGAACCGCCTGTTGATGCTCGCGCTTTTATTTGGGTTCCGGAGACCCCGCTGA--GATTCCATTCTTC
i calJac3.chr4             I 8450 T 8424
s saiBol1.JH378348            165401 136 -    375362 GGGCATTTTTCTCCCTTCTTCTTCTTCGTCTTTCCATCTCTTTCATCATAGAACAAAATGGGAG---------CGAACATGAGCCGCCGGTGTGTGTACAGGCTCTTGTTTGGGTCCAAGAGACCCCATTGG--GCTCCCGTTCTTC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      157055 133 -    373274 GGGCGCTTTTCTCC---CTCCTTCTTCGTCTTTTCATCTCTTTAATCATAGTACAAAATGAGAG---------CGAATGTGAACCGCCTGTTGATGTGTACGCTTTTATTTGGGTTCCAGAGACCCCGTTGA--GATCCCATTCTTC
i cebCap1.NW_016108108v1   I 6599 C 0
s aotNan1.NW_018494050v1      103931 133 -    285216 GGGCAGTTTTCTCC---CTTCTTCTTCGTCTTTCCGTCTCTTTTATCATAGTACAGAACAGGAG---------CGAACGGGAGCCGCCTGTGGATGTGCAGGCTCTTGTCTGGGTCCAAGAGACCCCGTTGG--GCTCCCGTTCTTC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479642 113 -   2232465 GAGCGCTTTTAACCC--CTTCTTCTTTGTCTTTCAGTCTCGTTAAT---------AAATGGGAG--------------------CCCAAGTGAACATGCACGCTTTGGTTCCCACTCAGGAGACCCGGTCTC---CTCCCCCTCTCC
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25851793 144 +  26524999 AGGAGATGCTGTGT---CATCTTCTTTGTCTTTCCCTCTCATCAGTAAAAGTATACGATGGGGACCACGGGGACCAAGGTGTGCCACTGGTTCCTGTGCAAGCCTCTGCTCGGCTTCAAGGGATGCTGTTGTAGGATTCTGTTCTCC
i canFam3.chr35            C 0 C 0

a score=10424.000000
s hg38.chr6_GL000254v2_alt     82624 1 +   4827813 T
s panTro5.chr6              29053210 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29297264 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5097286 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74103162 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280020 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28928794 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1906210 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1791412 1 -   2157725 T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28245720 1 -  71996105 t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913795 1 +   2316924 T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1788348 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            165537 1 -    375362 T
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      157188 1 -    373274 T
i cebCap1.NW_016108108v1   C 0 T 14842
s aotNan1.NW_018494050v1      104064 1 -    285216 T
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479755 1 -   2232465 T
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25851937 1 +  26524999 C
i canFam3.chr35            C 0 C 0
e calJac3.chr4             171325660 8424 - 171630274 T

a score=27279.000000
s hg38.chr6_GL000254v2_alt     82625 3 +   4827813 TTC
s panTro5.chr6              29053211 3 + 175400573 TTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29297265 3 + 173848474 TTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5097287 3 +   6154872 TTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74103163 3 + 122973662 TCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280021 3 + 172585720 TTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28928795 3 - 170955103 TTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1906211 3 -   2996164 TTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1791413 3 -   2157725 TTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28245721 3 -  71996105 ttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913796 3 +   2316924 TTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1788349 3 -   3067355 TTC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            165538 3 -    375362 TTC
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104065 3 -    285216 TTC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479756 3 -   2232465 TCC
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25851938 3 +  26524999 CCC
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      157189 14842 -    373274 T
e calJac3.chr4             171325660 8424 - 171630274 T

a score=794753.000000
s hg38.chr6_GL000254v2_alt     82628 101 +   4827813 CCCCT--------------CATTTCTTGTTTGTCTCCCTTCTGCTGTGGCAATCGCC-TTTGGTGATGTCGAGGTTCACA--GCATAACCAGTGGAGATAGTTCAAGGCTGAACA----TTG
s panTro5.chr6              29053214 101 + 175400573 CCCCT--------------CATTTCTTGTTTGTCTCCCTTCTGCTGTGGCAATCGCC-TTTGGTGATATCGAGGTTCACA--GCATAACCAGTGGAGATAGTTCAAGGCTGAACA----TTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29297268 101 + 173848474 CCCCT--------------CATTTCTTGTTTGTCTCCCTTCTGCTGTGGCAATCGCC-TTTGGTGATGTCGAGGTTCACA--GCATAACCAGTGGAGATAGTTCAAGGCTGAACA----TTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5097290 101 +   6154872 CCCCT--------------CATTTCTTGTTTGTCTCCCTTCTGCTGTGGCAATCGCC-TTTGGTGATGTCGAGGTTCATA--GCATAACCAGTGGAGATAGTTCAAGGCTGAACA----TTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74103166 115 + 122973662 CCCCCACCCCGCCCCCCGGCATTTCTTGTTTGTCTTCCTCCTGCTGTCGCAATCGCC-TTAGGTGATGTCGAGGCTCACA--GCATAGCCAGTGGAGATAGTTCAAGGCTGCGCA----TTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280024 102 + 172585720 CCCCT--------------CATTTCTTGTTTGTCTTCCTTCTGCTGTCGCAATCGCCTTTAGGTGATGTCGAGGCTCACG--GCATAGCCAGTGGAGATAGTTCGAGGCTGCGCA----TTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28928798 101 - 170955103 CCCCT--------------CATTTCTTGTTTGTCTTCCTTCTGCTGTCGCAATCGCC-TTAGGTGATGTCGAGGCTCACG--GCATAGCCAGTGGAGATAGTTCGAGGCTGCGCA----TTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1906214 101 -   2996164 CCCCT--------------CATTTCTTGTTTGTCTTCCTTCTGCTGTCGCAATCGCC-TTAGGTGATGTCGAGGCTCACG--GCATAGCCAGTGGAGATAGTTCGAGGCTGCGCA----TTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1791416 101 -   2157725 CCCCT--------------CATTTCTTGTTTGTCTTCCTTCTGCTGTCGCAATCGCC-TTAGGTGATGTCGAGGCTCACG--GCATAGCCAGTGGAGATAGTTCGAAGCTGCGTA----TTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28245724 101 -  71996105 cgcct--------------tatttcttgttcgtcttccttctGCTGTCGCAATCGCC-TTAGGTAATGTCGAGGCTCACG--GCATAGCCAGTGGAGATAGTTCGAGGCTGCGCT----TTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913799 101 +   2316924 CCCCT--------------CATTTCTTGTTTGTCTTCCTTCTGCTGTCGCAATCGCC-TTAGGTGATGTCGAGGCTCACG--GCATAGCCAGTGGAGATAGTTCGAAGCTGCGTA----TTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1788352 101 -   3067355 CCCCT--------------GATTTCTTGTTTGTCTTCCTTCTGATGTCGCAATAGCC-TTAGGTGATGTTGAGGCTCACA--GCATAGCCAGTGGAGATAGTTCGAGGCTGAGCA----TTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171317236 100 - 171630274 CTCGT--------------CATTTC-TTTTCCTCTTCCTTCTGCCCTTGCAATCGCC-TTAGGTGATGTGGAGGCTCACA--GCATAGAGATGGGAGATAAGTGAAGGCAACGCA----TTG
i calJac3.chr4             T 8424 C 0
s saiBol1.JH378348            165541 102 -    375362 CTCCT--------------CATTTC-TTTTTGTCTTCCTTCTGCCC--ACAATCGCC-TTAGGTGATGTCCAGGCGCACA--ACATAGAGATTGGAGACAGTTCAAGGCAATGCCACATTTG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104068 101 -    285216 CTCCT--------------CATTTCTTTTTTGTCTTCCTTCTGCCGTCACAATTGCC-TTAGGTGACGTCGAGGCGCACA--ACATAGAGATTGGAGACAGTTCGAGGCAACGCA----TTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479759  87 -   2232465 CCCGC--------------TTTTCCTTACATCTCT--------------CGGTCACA-TTAGGTGATGTCAAGGGTCAAA--ACATAGAGATGAAAGAGAATTCAAGGCAATCCT----TTG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25851941  87 +  26524999 -------------------------TCCCTTTCCCTTCCTCTGCTGTCCCAGCCACC-TTAGGTAATATGGAGGCTCACATCTCACAGAGAAGAGGAGGAATTCAAGACAATC---------
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      157189 14842 -    373274 T

a score=53234.000000
s hg38.chr6_GL000254v2_alt     82729 7 +   4827813 GGCTACA
s panTro5.chr6              29053315 7 + 175400573 GGCTACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29297369 7 + 173848474 GGCTACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5097391 7 +   6154872 GGCTACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74103281 7 + 122973662 GGCTACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280126 7 + 172585720 AGCTACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28928899 7 - 170955103 AGCTACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1906315 7 -   2996164 AGCTACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1791517 7 -   2157725 AGCTACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28245825 7 -  71996105 GGCTACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913900 7 +   2316924 AGCTACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1788453 7 -   3067355 GGCTACA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            165643 7 -    375362 GGCCACA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104169 7 -    285216 GGCCACA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479846 7 -   2232465 GTTTGTA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25852028 7 +  26524999 TGTTATG
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      157189 14842 -    373274 T
e calJac3.chr4             171317336 0 - 171630274 C

a score=680339.000000
s hg38.chr6_GL000254v2_alt     82736  88 +   4827813 CTTTTACTGTCTATATGTGCAG-AAATAGGATAG-AAAAA--CGTGAGGAGGC-AGAAGTC--TGTCGCTTGAAA-------------ACTACC----------------------------AGAGCAAAACCATC---
s panTro5.chr6              29053322  88 + 175400573 CTTTTACTGTCTATATGTGCAG-AAATAGGATAG-AAAAA--CGTGAGGAGGC-AGAAGTC--TGTCGCTTGAAA-------------ACTACC----------------------------AGAGCAAAACCGTC---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29297376  88 + 173848474 CTTTTACTATCTATGTGTGCAG-AAATAGGATAG-AAAAA--CGTGAGGAGGC-AGAAGTC--TGTCGCTTGAAA-------------ACTACC----------------------------AGAGCAAAACCGTC---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5097398  88 +   6154872 CTTTTACTGTCTATATGTGCAG-AAATAGGATAG-AAAAA--CGTGAGGAGGC-AGAAGTC--TGTTGCTTGAAA-------------ACTACC----------------------------AGAGCAAAACCATC---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74103288  88 + 122973662 TTTTTACTGTCTATATGTGCAG-AAATAGGATAG-AAAAA--TGTGAGAAGGC-AGAAGTC--TGTTGCTTGAGA-------------ACTGCC----------------------------AGAGCAAAACCATC---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280133  88 + 172585720 TTTTTACTGTCTATTTGTGCAG-AAATAGGATAG-AAAAA--TGTGAGAAGGC-AGAAATT--TGCTGCTTGAGA-------------ACTGCC----------------------------AGAGCAAAACCATC---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28928906  88 - 170955103 TTTTTACTGTCTATTTGTGCAG-AAATAGGATAG-AAAAA--TGTGAGAAGGC-AGAAATT--TGCTGCTTGAGA-------------ACTGCC----------------------------AGAGCAAAACCATC---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1906322  88 -   2996164 TTTTTACTGTCTATTTGTGCAG-AAATAGGATAG-AAAAA--TGTGAGAAGGC-AGAAATT--TGCTGCTTGAGA-------------ACTGCC----------------------------AGAGCAAAACCATC---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1791524  89 -   2157725 TTTTTACTGTCTATTTGTGCAG-AAATAGGATAGAAAAAA--TGTGAGAAGGC-AGAAATT--TGCTGCTTGAGA-------------ACTGCC----------------------------AGAGCAAAACCATC---
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28245832  88 -  71996105 TTTTTACTGTCTATTTGTGCAG-AAATAGGATAG-AAAAA--TGTGAGAAGGC-AGAAATC--TGCTGCTTGAGA-------------ACTGCC----------------------------AGAACAGAACCATC---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913907  88 +   2316924 TTTTTACTGTCTATTTGTGCAG-AAATAGGATAG-AAAAA--TGTGAGAAGGC-AGAAATT--TGCTGCTTGAGA-------------ACTGCC----------------------------AGAGCAAAACCATC---
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1788460  87 -   3067355 TTTTTACTGTCTATTTGTGCAG-AAATAGGATAG-AAAAA--TGTGAGAAGGC-AGAAATC--GGCTGCTTGAGA-------------ACTG-C----------------------------AGAGCAAAACCATC---
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171317336 103 - 171630274 TTTTTACTCCCCATGTGTGCAG-AAGTGGGATAG-AAAAAGTTG--AGGAAAC-AGAAGTCTATGTCGCTTGAGAATTAGGTTTGAGCACTGTC----------------------------AGAGCAAAAACACC---
i calJac3.chr4             C 0 I 88
s saiBol1.JH378348            165650 104 -    375362 TTTGTACTCTCTACATGAGCAGAAAATAGGATAG-AAAAAAATGTTAGGACGC-AGACGTC--CGTTGCTTGAGAATTAGGACTGAACACTGCC----------------------------AGAGCAAAATCACC---
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104176 102 -    285216 TTTGTACTCTCTATATGAGCAGAAAATAGGGTAG-AAAAA--TGTTAGGAGGC-AGAAGTC--CGTTGCTTGAGAATTAGGATTGAATAGTGCC----------------------------AGAGCAAAATCACC---
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479853  96 -   2232465 TTTTTTCTTTCTATGTATGTAG-AAATTGAATAG-AAAAA--ATTCAGGGAACTAAAAATG--GATTTCTTGAGAAATAGACTCA---AACACA----------------------------AAAGTAAAACC------
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25852035 122 +  26524999 TTTTTTCATTCCATATGTGCAG-GAATAGAACAA-AAAAAA-AGTTAAGAGTG-CTAAATCAGTATTTTTTGAAG-------------ACTGGCTTTGAATGATGTTAGGTCAGAAAGGGAAAGAAAAAAGAAGTTAAA
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      157189 14842 -    373274 T

a score=845102.000000
s hg38.chr6_GL000254v2_alt     82824 87 +   4827813 GCTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctacacccccTCACTATAAGGT
s panTro5.chr6              29053410 87 + 175400573 GCTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctacacccccTTACTATAAGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29297464 87 + 173848474 GCTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctacacccccTTACTATAAGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5097486 87 +   6154872 ACTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccgctgagctacagccccTTAGTGTAAGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74103376 87 + 122973662 AGTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctacacccccTTACTAAAAGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280221 87 + 172585720 ACTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctacacccccTTGCTTAAAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28928994 87 - 170955103 ACTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctacacccccTTGCTTAAAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1906410 87 -   2996164 ACTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctacacccccTTGCTTAAAGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1791613 87 -   2157725 ACTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctacacccccTTGCTTAGAGGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28245920 87 -  71996105 ACTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctacacccccTTGCTTAAAGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1913995 87 +   2316924 ACTtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctacacccccTTGCTTAGAGGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1788547 87 -   3067355 ACAtggaggtgtcggggatcgaacccgaggcctcatacatgcaaagcatgcgctctaccactgagctacacccccTTGCTTAAAGGG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            165754 87 -    375362 AGCtggaggtgctggggattgaacccaggacctcatacatgcaaagcatgcgctctaccactgagctacacccccTTCCCCAAAGGC
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104278 87 -    285216 AGCtggaggtgccggggatcgaacccggggcctcatacatgcaaagcatgcgctctacggctgagctacacccccTTCCTGAAAGGC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1479949 85 -   2232465 --TtggaggtgccggggatcgaacccggggcctcatacatgcaaagcatgcgctctaccactgagctacacccccTTCTTTCAGAGG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25852157 85 +  26524999 GCCtagaggtgccagggttcaaacccagggcctcatacatgcaaagcatgcactctaccactgagctataccccTT--CTGGAAGAG
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      157189 14842 -    373274 T
e calJac3.chr4             171317439 88 - 171630274 I

a score=566052.000000
s hg38.chr6_GL000254v2_alt     82911 68 +   4827813 -CTCTTTG-TAATAATTTTCAGGAGGTAACTTTCATTTCCTGAG--A------C----TCCGTGAGCATGCTGGTAGTAGTG
s panTro5.chr6              29053497 68 + 175400573 -CTCTTTG-TAATAATTTTCAGGAGGTAACTTTCATTTCCTGAG--A------C----TCCGTGAGCATGCTGGTAGTAGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29297551 68 + 173848474 -CCATTTG-TAATAATTTTCAGGAGGTAACTTTCATTTCCTGAG--A------C----TCCGTGAGCATGCTGGTAGTAGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5097573 68 +   6154872 -CTCCTTG-TAATAATTTTCAGGAGGTAGCTTTCATTTCCTGAG--A------C----TCCGTGAGCATGCTGGTAGTAGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74103463 70 + 122973662 -CTCTTTG-TAATAATTTTCAGGAGGTAACCTTCATTTCCTGAG--ACT----C----TCCCTGAGCATGCTGGCAGTAGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280308 70 + 172585720 -CTGTTTG-TAATAATTTCCAGGAGGTAACTTTCATTTCCTGAG--ACT----C----TCCGTGAGCATGCTGGTAGTAGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28929081 70 - 170955103 -CTGTTTG-TAATAATTTCCAGGAGGTAACTTTCATTTCCTGAG--ACT----C----TCCGTGAGCATGCTGGTAGTAGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1906497 70 -   2996164 -CTGTTTG-TAATAATTTCCAGGAGGTAACTTTCATTTCCTGAG--ACT----C----TCCGTGAGCATGCTGGTAGTAGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1791700 70 -   2157725 -CTGTTTG-TAATAATTTCCAGGAGGTAACTTTCATTTCCTGAG--ACT----C----TCCGTGAGCATGCTAATAGTAGTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28246007 70 -  71996105 -CTGTTCA-TAATAATTTCCAGGGGGTAATTTTCATTTCCTGAG--ACT----C----TCCGTGAGCATGCTGGTAGTAGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1914082 70 +   2316924 -CTGTTTG-TAATAATTTCCAGGAGGTAACTTTCATTTCCTGAG--ACT----C----TCCGTGAGCATGCTAATAGTAGTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1788634 70 -   3067355 -CTGTTTG-TAATAATTTCCAGGAGGTAACTTTCATTTCCTGAG--ACT----C----TCCTTGAGCATGCTGGTAGTAGTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171317527 72 - 171630274 -CCCTTTG-TAGTAATTTTCGGGGAGTAACTTTGGTTTTCTGAGACTGG----C----TCCGTGAGTTCGCTGGTAGCAGTG
i calJac3.chr4             I 88 I 923
s saiBol1.JH378348            165841 70 -    375362 -CTTTTGG-TAGTAACTTTCAGGAGGCAACTTTCATTTGCTGAG--CTG----C----TCCAGGGACATGCTGGTGCTAGTG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104365 70 -    285216 -CTTTTTG-TAGTAATTTTCAGGAGGCAGCTTTCATTTTCTGAG--CCG----C----TCCATGAACATGCTGGTAGTAGTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480034 71 -   2232465 -TTGTTTGTTAGCATTTGTCTGGAAG--ACTT--ACCTTCTTAG--ACTTTGGT----TCTGTGAACTTTTTGGTGGTAGTG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25852242 71 +  26524999 TCCTTTGC-TACCACTTATGTAGAGATAAGGTTTGTTTTCTGAG--GCC----CTGGATCCCTGAGCATCATGGTAGT----
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      157189 14842 -    373274 T

a score=428716.000000
s hg38.chr6_GL000254v2_alt     82979 57 +   4827813 GTCAGTATTATGGAGTGCGGAGAGCTGTTCTGAGCAGGAGATACTT-G-GT---ACTAATGG
s panTro5.chr6              29053565 57 + 175400573 GTCAGTATTATGGAGTGCGGAGAGCTGTTCTGAGCGGGAGATACTT-G-GT---ACTAATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29297619 57 + 173848474 GTCAGTATTATGGAGTGCGGAGAGCTGTTCTGAGCAGGAGATACTT-G-GT---ACTAATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5097641 56 +   6154872 GTCAGTATTATGGAGTGTGGAGAGCTGTTCTGAGCAGGAGATACTT-G-GT---ACTAA-GG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74103533 57 + 122973662 GTCAGTATTATGGAGTGTGGAGAGCTGTTCTGAGCAGGAGATACTT-G-GT---ACTAATGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280378 57 + 172585720 GTCAGTATTATGGAGTGTGGAGAGCCGTTCTGAGCAGGAGATACTT-G-GT---ACTAATGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28929151 57 - 170955103 GTCAGTATTATGGAGTGTGGAGAGCCGTTCTGAGCAGGAGATACTT-G-GT---ACTAATGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1906567 57 -   2996164 GTCAGTATTATGGAGTGTGGAGAGCCGTTCTGAGCAGGAGATACTT-G-GT---ACTAATGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1791770 57 -   2157725 GTCAGTATTATGGAGTGTGGAGAGCCGTTCTGAGCAGGAGATACTT-G-GT---ACTAATGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28246077 57 -  71996105 GTCAGTATTATGGAGTGTGGAGAGCCGTTCTGAGCAGGAGATACTT-G-GT---ACTAATGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1914152 52 +   2316924 GTCAGTATTATGGAGTGTGGAGAGCC-----GAGCAGGAGATACTT-G-GT---ACTAATGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1788704 57 -   3067355 GTCAGCATTATGGAGTGTGGAGAGCCGTTCTGAGCAGGAGATACTT-G-GT---ACTAACGG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            165911 54 -    375362 ATCAGTATTTTGGAGCATGGTAA------CTGAGCAGGAGATACTT-G-CTCACATTCGTGG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104435 56 -    285216 GTCAGTATTTTGGAGCATGGAGG-CTGCTCTGAGCAGGAGATACTT-G-GT---ATTAATGT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480105 58 -   2232465 GTCAGCACCAAGGAGCATTGGCAGCCACGATGGGTAGACGATGATC-ACGT---ACCAGTAG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25852313 57 +  26524999 -TCAGTGTTAAGGGATATAAGCAGCTGCTCTGGGCAGAACACCTTCAG-GA---ACTTGAGA
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      157189 14842 -    373274 T
e calJac3.chr4             171317599 923 - 171630274 I

a score=1065364.000000
s hg38.chr6_GL000254v2_alt     83036 115 +   4827813 GGGATACAGATTCT----------------TTAGAATACTGTGTAGGACTTGAAACGAAAAACGAAAGATTAGAAAAGTGTCAGATAATAACCACAAGAAGTTTCCATTGTGGC-----------------------------------------CTCAAGACGTTGAGTTC
s panTro5.chr6              29053622 115 + 175400573 GGGATACAGATTCT----------------ATAGAATACTGTGTAGGACTTGAAACGAAAAACGAAAGATTAGAAAAGTGTCAGATAATAACCACAAGAAGTTTCCATTGTGGC-----------------------------------------CTCAAGACGTTGAGTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29297676 115 + 173848474 GGGCTACAGATTCT----------------TTAGAATACTGTGTAGGACTTGAAACGAAAAACGAAAGATTAGAAAAGTGTCAGATAATAACCACAAGAAGTTTCCATTGTGGC-----------------------------------------CTCAAGACGTTGAGTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5097697 115 +   6154872 GGGATACAGATTCT----------------TTAGAATACTGTGTAGGACTTGAAATGAAAAACGAAAGATTAGAAAAGTGTCAGATAATAACCGCAAGAAGTTTCCATTGTGGC-----------------------------------------CTCAAGACGTTGAGTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74103590 110 + 122973662 GGGATACAGATTCT----------------TTAGAATACTGTGTAGGACTTGAAACGAAAAACAAAAGATTAGAAAAGTGTCAGATAATAACCACAAGAAGTTTCCATTGTGGC-----------------------------------------TTCAA-----TGATTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280435 115 + 172585720 GGGATACAGATTCT----------------TTAGAATACTATGTAGGACTTGAAATGAAAAACAAAAGATTAGAAAAGTGTCAGGTAATAACTACAGGAAGTTTCCATTGTGGC-----------------------------------------TTCAAGACATTGAGTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28929208 115 - 170955103 GGGATACAGATTCT----------------TTAGAATACTATGTAGGACTTGAAATGAAAAACAAAAGATTAGAAAAGTGTCAGGTAATAACTACAGGAAGTTTCCATTGTGGC-----------------------------------------TTCAAGACATTGAGTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1906624 115 -   2996164 GGGATACAGATTCT----------------TTAGAATACTATGTAGGACTTGAAATGAAAAACAAAAGATTAGAAAAGTGTCAGGTAATAACTACAGGAAGTTTCCATTGTGGC-----------------------------------------TTCAAGACATTGAGTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1791827 115 -   2157725 GGGATACAGATTCT----------------TTAGAATACTATGTAGGACTTGAAATGAAAAACAAAAGATTAGAAAAGTGTCAGGTAATAACTACAAGAAGTTTCCATTGTGGC-----------------------------------------TTCAAGACATTGAGTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28246134 115 -  71996105 GGGATACAGATTCT----------------TTAGAATACTATGTAGGACTTGAAAAGAAAAACAAAAGATTAGAAAAGTGTCAGGTAATAACTACAAAAAGTTTCCATTGTGGT-----------------------------------------TTCAAGACATTGAGTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1914204 115 +   2316924 GGGATACAGATTCT----------------TTAGAATACTATGTAGGACTTGAAATGAAAAACAAAAGATTAGAAAAGTGTCAGGTAATAACTACAAGAAGTTTCCATTGTGGC-----------------------------------------TTCAAGACATTGAGTTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1788761 115 -   3067355 GGGATACAGATTCT----------------TTAGAATACTATGTAGGACTTGAAATGAAAAACAAAAGATTAGAAAAGTGTCAGGTAATAACTACAAGAAGTTTCCATTGTGGC-----------------------------------------TTCAAGTCATTGAGTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171318522 114 - 171630274 GGGATGCAGAGTCT----------------TTAGAATACTGCATAGTACTTGAAATGGAACTCAAAATATTAGAAAAGTGTCAGATAACTGCCACAAGATGTTTCCAT-GTGGC-----------------------------------------TGTAAAACGTTGAGCTG
i calJac3.chr4             I 923 C 0
s saiBol1.JH378348            165965 111 -    375362 ----GACACATTCT----------------TCAGAATACTGCGTAGGACTTGAAACAAAAAGCAGAAGACTGGAAAACTGTCAGATAATAACCATAAGAAGTTTCCATCGTGGC-----------------------------------------TTCAAGACATTGAGTTC
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104491 110 -    285216 GAGATACACATTCT----------------TCAGAATACTGCGTAGGACTTGA-----AAAGCAAAAGACTGGAAAAGTGTCAGATAATAACCACCAGAAGTTTCCATCGTGGC-----------------------------------------TTCAAGACGTTCAGTTC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480163 131 -   2232465 GAAACACAAAACTTGAAATGGAAGGTAAAACTTGAATACTACATAAAACTTGAAATGGAAGGTAAAAGATTGAAAACGTGTCAAATAACAACCAAAAGAAGTTCCCTTTGTGGC-----------------------------------------TTTGAAATGTTAAGTTG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25852370 150 +  26524999 GGGCTACTGATTTT----------------TCAGA-----GTGTAGAGCTTCAAATGGAAGGCAAAAGATTGGACATATGTCAGATAATAACC-CAAGGAGTTTCCACTGTGACTTTCtttttaatttaaattcaattagccaacataccagtagtttcagaggtagagttc
i canFam3.chr35            C 0 I 126
e cebCap1.NW_016108108v1      157189 14842 -    373274 T

a score=426667.000000
s hg38.chr6_GL000254v2_alt     83151 47 +   4827813 ----------------------------TTAGGGTCTC---CTTCTATTATGCTTGGCAAG-AATCA----AGTTCAGGTTTT
s panTro5.chr6              29053737 47 + 175400573 ----------------------------TTAGGGTCTC---CTTCTATTTTGCTTGGCAAG-AATCA----AGTTCTGGTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29297791 47 + 173848474 ----------------------------TTAGGGTCTC---CTTCTATTATGCTTGGCAAG-AATCA----AGTTCTGGTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5097812 47 +   6154872 ----------------------------TTAGGGTCTC---CTTCTATTATGCTTGGCAAG-AATCA----AGTTCTGGTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74103700 47 + 122973662 ----------------------------TTAGGGTCTC---CTTCTGTTATGCTTGGCAAG-AATCA----AGTTCTGGTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280550 47 + 172585720 ----------------------------TTCAGGTCTC---CTACTATTATGGTTGGAAAG-AATCA----AGTTCTGGTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28929323 47 - 170955103 ----------------------------TTCAGGTCTC---CTACTATTATGGTTGGAAAG-AATCA----AGTTCTGGTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1906739 47 -   2996164 ----------------------------TTCAGGTCTC---CTACTATTATGGTTGGAAAG-AATCA----AGTTCTGGTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1791942 47 -   2157725 ----------------------------TTCCGGTCTC---CTACTATTATGCTTGGCAAG-AATCA----AGTTCTGGTTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28246249 47 -  71996105 ----------------------------TTCGGGTCTC---CTTCTATTATGCTTGGCAAG-AATCA----AGTTCTGGTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1914319 47 +   2316924 ----------------------------TTCGGGTCTC---CTACTATTATGCTTGGCAAG-AATCA----AGTTCTGGTTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1788876 47 -   3067355 ----------------------------TTCGGGTCTC---CTTCTATTATGCTTGGCAAG-AATCA----AGTTCTGGTTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171318636 51 - 171630274 ----------------------------TTAGGATCTCCTTCTTCTATTATGCTTGACAAGAAATCA----ACTTCTGGTTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            166076 47 -    375362 ----------------------------CTAGGGTCTC---CTTCTATTATGCTTGGAAAG-AATCA----ACTTCTGGTTTT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104601 47 -    285216 ----------------------------TTAGGGTCTC---CTTCTATTATGCTTGGAAAG-AATCA----ACTTCTGGTTTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480294 47 -   2232465 ----------------------------TTAGATTCTA---CTTCTGTT-TGCTTAGCAAGGAATCA----GGTTCTGGTTTT
i otoGar3.GL873742         C 0 I 1
s canFam3.chr35             25852646 79 +  26524999 ttagagtctctcaggtttgAAAATGTGGTTCTGGTTTC---CTTCTCCCATTCTGGGAAAG-AGTCAATCTAGTCCCGGTTTT
i canFam3.chr35            I 126 C 0
e cebCap1.NW_016108108v1      157189 14842 -    373274 T

a score=20135.000000
s hg38.chr6_GL000254v2_alt     83198 4 +   4827813 ---CGTT
s panTro5.chr6              29053784 4 + 175400573 ---CGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29297838 4 + 173848474 ---CGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5097859 4 +   6154872 ---CGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74103747 4 + 122973662 ---CGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280597 4 + 172585720 ---CGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28929370 4 - 170955103 ---CGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1906786 4 -   2996164 ---CGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1791989 4 -   2157725 ---CGTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28246296 4 -  71996105 ---TGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1914366 4 +   2316924 ---CGTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1788923 4 -   3067355 ---CGTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            166123 4 -    375362 ---CGTT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104648 4 -    285216 ---CGTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480342 3 -   2232465 ---TAT-
i otoGar3.GL873742         I 1 C 0
s canFam3.chr35             25852725 4 +  26524999 CAGC---
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      157189 14842 -    373274 T
e calJac3.chr4             171318687 0 - 171630274 C

a score=1331888.000000
s hg38.chr6_GL000254v2_alt     83202 142 +   4827813 TCTTTTAATTTCTCCCAGATAC------------GACACAAAGCCATTGAAATTCAGCCTTTTCCTGCCTAAAACGCTTCATAA---TTGTTGTTTGCTCAATCGGAATATTAAAGATAAGATTTGATGGAGGAAAGCCACAATCAGAAGAAAACCT
s panTro5.chr6              29053788 142 + 175400573 TCTTTTAATTTCTCCCAGATAC------------GACACAAAGCCATTGAAATTCAGCCTTTTCCTGCCTAAAACGCTTCATAA---TTGTTGTTTGCTCAATCGGAATATTAAAAATAAGATTTGATGGAGGAAAGCCACAATCAGAAGAAAACCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29297842 142 + 173848474 TCTTTTAATTTCTCCCAGATAC------------GACACAAAGCCATTGAAATTCAGCCTTTTCCTGCCTAAAACGCTTCATAA---TTGTTGTTTGCTCAATCGGAATATTAAAAATAAGATTTGATGGAGGAAAGCCACAATCAGAAGAAAACCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5097863 142 +   6154872 TCCTTTAATTTCTCCCAGATAC------------GACACAAAGCCATTGAAATTCAGCCTTTTCCTGCCTAAAACGCTTCATAA---TTGTTGTTTGCTCAATCGGAATATTAAAGATAAGATTTGATGGAGGAAAGCCACAATCAGAAGAAAACCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74103751 131 + 122973662 TCTTTTGATTTCTTCCAGATAC------------GACACAAAGCCATTGAAATTCAGCCTTTTCCTGTCTAAAACGCTTCATAA---TTGTTGTTTGCTCAATCGGAATATTAAAGGTAAGATTTGATGGAGGAAAGCCAC-----------AACCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280601 142 + 172585720 TCTTTTGATTTCTTCCAGATAC------------CACACGAAGCCATTGAAATTCAGCCTTTTCCTGCCTAAAACGGTTCATAA---TTGTTGTTTGCTCAATAGGAATATTAAAGGTAAGATTTGGTGGAGGAAAGCCACAATCAGAAGAAAACCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28929374 142 - 170955103 TCTTTTGATTTCTTCCAGATAC------------CACACGAAGCCATTGAAATTCAGCCTTTTCCTGCCTAAAACGGTTCATAA---TTGTTGTTTGCTCAATAGGAATATTAAAGGTAAGATTTGGTGGAGGAAAGCCACAATCAGAAGAAAACCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1906790 142 -   2996164 TCTTTTGATTTCTTCCAGATAC------------CACACGAAGCCATTGAAATTCAGCCTTTTCCTGCCTAAAACGGTTCATAA---TTGTTGTTTGCTCAATAGGAATATTAAAGGTAAGATTTGGTGGAGGAAAGCCACAATCAGAAGAAAACCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1791993 142 -   2157725 TCTTTTGATTTCTTCCAGATAC------------CGTACGAAGCCACTGAAATTCAGCCTTTTCCTGCCTAAAACGGTTCATAA---TTGTTGTTTGCTCAATAGGAATATTAAAGGTAAAATTTGGTGGAGGAAAGCCACAATCAGAAGAAAACCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28246300 141 -  71996105 TCTTTTGATTTCTTCCAGATAC------------CACACGAAGCCATTGAAATTCAGCCTTTTCCTGCCTAAAACGCTTCATAA---TTGTTGTTTGCTCAATAGGAATATTAAAGGTAAGA-TTGGTGGAGGAAAGCCACAATCAGAAGAAAACCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1914370 142 +   2316924 TCTTTTGATTTCTTCCAGATAC------------CATACGAAGCCACTGAAATTCAGCCTTTTCCTGCCTAAAACGGTTCATAA---TTGTTGTTTGCTCAATAGGAATATTAAAGGTAAAATTTGGTGGAGGAAAGCCACAATCAGAAGAAAACCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1788927 142 -   3067355 TCTTTTGATTTCTTCCAGATAC------------CACACGAAGACATTGAAATTCAGCCTTTCCCTGCCTAAAACGCTTCATAA---TTGTTGTTTGCTCAATAGGAATATTAAAGGTAAGATTTGGTGGAGGAAAGCCACAATCAGAAGAAAACCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171318687 142 - 171630274 TCATTCAATTTCTCCCAGAGAT------------GACACAAAGCTATTGAAATTCAGCTGTTTCCTACTTAAAATGCTTCATAT---TTGTTGTTAACTCAGTCAGAAGACTAAAGGTTAGATTTGATTGAGGAAAGTCACAGTCAGAAGAAAACTT
i calJac3.chr4             C 0 I 9442
s saiBol1.JH378348            166127 142 -    375362 TCTTTTTATTTCTTCCAGATAT------------GACAGAAAGCCATTGAAATTTGGACTTTCCCTGCCTAAAATGCTTCATAT---TTGTTGTTTACTCAATCTGAATATTAAAGGTAAGATTTGATGGAGGAAAGCCACAATCAGAAGAAAACCT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104652 142 -    285216 TCTTTTGATTTCTTCCAGATAT------------GACACAAAGCCATTGAAATTCGGCCTTTCTCTGCCTAAAACACTTCATAT---TTGTTGTTTACTCAATCTGAATATTAAGGGTAAGATTTGATGGAGGAAAGCCACAATCAGAAGAACATCT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480345 111 -   2232465 TCTTTTGATTTCTCCCAG----------------GACAGATGGCTATTAAAATTTA-----------------------CATAT---TTGTTTT---CTCAATCAGAATATTAATGGACAGATTTGATGCCAGACAGCCATCATCA-AAGAAAACCT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25852729 141 +  26524999 --TCTTGATTTTCTGCAGATACGTCTTAACTTGAGACACAAGACCGTTGAAATTCAGCTTTTTCCTACCTAGAATGTTTCATAATATTTGTAGTTTGCTCCATCGGAGTATTAAGGACCAGACTTGATGGAGAAAAGCCATGG--------------
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      157189 14842 -    373274 T

a score=265785.000000
s hg38.chr6_GL000254v2_alt     83344 34 +   4827813 GACAGCGATGCACTTAGCATTTTTTCATAAGGGT
s panTro5.chr6              29053930 34 + 175400573 GACAGCGATGCACTTAGCATTTTTTCATAAGGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29297984 34 + 173848474 GACAGCGATGCACTTAGCATTTTTTCATAAGGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5098005 34 +   6154872 GACAGCGATGCACTCAGCATTTTTTCATAAGGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74103882 34 + 122973662 GTCAGTGATGCACTTAGCATTTTTTCCTAAGGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280743 34 + 172585720 GAGAGCGATGCACTTAGCATGTTTTCATAAGGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28929516 34 - 170955103 GAGAGCGATGCACTTAGCATGTTTTCATAAGGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1906932 33 -   2996164 GAGAGCGATGCACTTAGCATGTTTTCATAA-GGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1792135 34 -   2157725 GAGAGCGAGGCACTCAGCATGTTTTCATAAGGGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28246441 34 -  71996105 GAGAGTGATGCACTCAGCATGTTTTCATAAGGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1914512 34 +   2316924 GAGAGCGAGGCACTCAGCATGTTTTCATAAGGGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1789069 34 -   3067355 GAGAGCGAGGCACTCAGCATGTTTTCATAAGTGT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            166269 34 -    375362 GAGAGGGATGCACTCAGTATTTTTTCATAAGGGT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104794 34 -    285216 GAGAGGGATGCACTCAGTATTTTTCCATAAGGGT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480456 34 -   2232465 GAGAAATATGCATTCAATATTTCATTATAAGACT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25852870 31 +  26524999 ---AGCGATGCACTCAGAGTTTCACTTGAAGGGT
i canFam3.chr35            C 0 I 45
e cebCap1.NW_016108108v1      157189 14842 -    373274 T
e calJac3.chr4             171318829 9442 - 171630274 I

a score=32581.000000
s hg38.chr6_GL000254v2_alt     83378 4 +   4827813 CCtt
s panTro5.chr6              29053964 4 + 175400573 CCtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29298018 4 + 173848474 CCtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5098039 4 +   6154872 CCtt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74103916 4 + 122973662 CCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280777 4 + 172585720 CCCt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28929550 4 - 170955103 CCCt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1906965 4 -   2996164 CCCt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1792169 4 -   2157725 CCCt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28246475 4 -  71996105 CCCt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1914546 4 +   2316924 CCCt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1789103 4 -   3067355 CCCt
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            166303 4 -    375362 CCCT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104828 4 -    285216 CCCT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480490 4 -   2232465 CTTT
i otoGar3.GL873742         C 0 I 26
e canFam3.chr35             25852901 45 +  26524999 I
e cebCap1.NW_016108108v1      157189 14842 -    373274 T
e calJac3.chr4             171318829 9442 - 171630274 I

a score=530533.000000
s hg38.chr6_GL000254v2_alt     83382 74 +   4827813 agctggcgtggtgtcttacgcctgtactcccagctactctagaggctgaggcacgaggatcgcttgagctcggg
s panTro5.chr6              29053968 74 + 175400573 agctggcgtggtgtcttacgcctgtactcccagctactctagaggctgaggcacgaggatcgcttgagctcggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29298022 74 + 173848474 agctggcgtggtgtcttacgcctgtactcccagctactctagaggctgaggcacgaggatcgcttgagctcggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5098043 74 +   6154872 agctggcgtggtgtcttacgcctgtactcccagctactctagaggctgaggcacgaggatcgcttgacttcggg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74103920 74 + 122973662 AGCTggcgtggtgtcttacgcctgtactcacagctactccagaggctgaggcgggaggatcgcttgagctcggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280781 74 + 172585720 agctggtgtggcgtcttatgcctgtactcacaggtactccagaggctgaggcgggaggatggcttgagctcagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28929554 74 - 170955103 agctggtgtggcgtcttatgcctgtactcacaggtactccagaggctgaggcgggaggatggcttgagctcagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1906969 74 -   2996164 agctggtgtggcgtcttatgcctgtactcacaggtactccagaggctgaggcgggaggatggcttgagctcagg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1792173 74 -   2157725 agctggtgtggcgtcttacgcctgtatttacaggtactccagaggctgaggcgggaggatggcttgagctcagg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28246479 74 -  71996105 agctggtgtggcgtcttacgcctgtactcacaagtactccagagggtgaggcgggaggatggcttgagctcagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1914550 74 +   2316924 agctggtgtggcgtcttacgcctgtactcacaggtactccagaggctgaggcgggaggatggcttgagctcagg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1789107 74 -   3067355 agctggtgtggcgtcttacgcctgtactcacaggtactccagaggctgcggagggaggatggcttgagctcagg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            166307 74 -    375362 AGCTggcgtggcatctcactcctgaactcacagctactccagaggctgaggcacaaggatctcttaagctcggg
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      104832 74 -    285216 GGTTggcgtggcctctcacacctgaactcacagctactccagaggctgaggcacgaggatcgcttgagctcggg
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25852901 45 +  26524999 I
e otoGar3.GL873742           1480494 26 -   2232465 I
e cebCap1.NW_016108108v1      157189 14842 -    373274 T
e calJac3.chr4             171318829 9442 - 171630274 I

a score=447681.000000
s hg38.chr6_GL000254v2_alt     83456  66 +   4827813 agttagttgttgtagggagctatgactgtgccactgtcctccagcctgggcaacagagagaga---------------------------------------agg
s panTro5.chr6              29054042  66 + 175400573 agttagttgttgtagggagctatgactgtgccactgtcctccagcctgggcaacagagagaga---------------------------------------agg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29298096  66 + 173848474 agttagttgttgtagggagctatgactgtgccactgtcctccagcctgggcaacagagagaga---------------------------------------agg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5098117 105 +   6154872 agttagttgttgtagggagctatgactgtgccactgtcctccagcctgggcaacagagagagaagagaagtgaagggaagggaagggaggggaggggaggggagg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74103994  66 + 122973662 agttggtggttgtagggagctatgattgcgccactgccctccagcctggaaaacagagagaga---------------------------------------agc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280855  66 + 172585720 agttggtggttgtagcgagctatgattgcgccactgccctccagccttggcaacagagaggga---------------------------------------agg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28929628  66 - 170955103 agttggtggttgtagcgagctatgattgcgccactgccctccagcctgggcaacagagagaga---------------------------------------AGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1907043  65 -   2996164 agttggtggttgtagcgagctatgattgcgccactg-cctccagcctgggcaacagagagaga---------------------------------------AGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1792247  66 -   2157725 agttggtggttttagggagctatgattgcgccactgccctccagcctgggcaacagagagaga---------------------------------------agg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28246553  66 -  71996105 agttggtggttgtagggagctatgattgcgccactgccctccagcctgggcaaaagagaggga---------------------------------------agg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1914624  66 +   2316924 agttggtggttttagggagctatgattgcgccactgccctccagcctgggcaacagagagaga---------------------------------------agg
i manLeu1.NW_012104165v1   C 0 I 752
s colAng1.NW_012115566v1     1789181  66 -   3067355 agttggtggttgtagggagctatgattgcgccactgccctccagcctgggcaacagagagggg---------------------------------------agg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            166381  66 -    375362 ggttggtggttgcagggagctatgactgtgccactgccctccagcctgggcaatggagtgaga---------------------------------------AAA
i saiBol1.JH378348         C 0 I 22
s aotNan1.NW_018494050v1      104906  66 -    285216 ggttggtgattgtacggagctacgactgtgccactgccctccagcctgggcaacggagtgaga---------------------------------------AAA
i aotNan1.NW_018494050v1   C 0 I 20
s otoGar3.GL873742           1480520  35 -   2232465 AGTTATCTAATTTAGGAGGCTCTGCTT-----ATTGTCCT-----------------------------------------------------------------
i otoGar3.GL873742         I 26 C 0
e canFam3.chr35             25852901  45 +  26524999 I
e cebCap1.NW_016108108v1      157189 14842 -    373274 T
e calJac3.chr4             171318829 9442 - 171630274 I

a score=52665.000000
s hg38.chr6_GL000254v2_alt     83522 15 +   4827813 gaaggggaggggagg
s panTro5.chr6              29054108 15 + 175400573 gaaggggaggggagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29298162 15 + 173848474 gaaggggaggggagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5098222 15 +   6154872 gaagtggaggggagg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74104060 15 + 122973662 gaagagaagcgaaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280921 15 + 172585720 cgaggcggggcgagg
i rheMac8.chr4             C 0 I 28
s macFas5.chr4              28929694 15 - 170955103 CGAGGCGGGGCGAGG
i macFas5.chr4             C 0 T 15340
s macNem1.NW_012011356v1     1907108 15 -   2996164 CGAggcggggagagc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1792313 15 -   2157725 cgaggccaggcaagg
i cerAty1.NW_012001495v1   C 0 I 62
s chlSab2.chr17             28246619 15 -  71996105 ggaggggaggggagg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1789247 15 -   3067355 ggaggggagggaagg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            166469 15 -    375362 gaaggagggaggaag
i saiBol1.JH378348         I 22 C 0
s aotNan1.NW_018494050v1      104992 15 -    285216 gaaggagggagggag
i aotNan1.NW_018494050v1   I 20 C 0
e canFam3.chr35             25852901 45 +  26524999 I
e otoGar3.GL873742           1480555  0 -   2232465 C
e cebCap1.NW_016108108v1      157189 14842 -    373274 T
e calJac3.chr4             171318829 9442 - 171630274 I
e manLeu1.NW_012104165v1     1914690 752 +   2316924 I

a score=16370.000000
s hg38.chr6_GL000254v2_alt     83537 6 +   4827813 gaaagg
s panTro5.chr6              29054123 6 + 175400573 gaaagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29298177 6 + 173848474 gaaagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5098237 6 +   6154872 gaaagg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74104075 6 + 122973662 gaagcg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280964 6 + 172585720 ggcagg
i rheMac8.chr4             I 28 I 4
s macNem1.NW_012011356v1     1907123 6 -   2996164 gagggg
i macNem1.NW_012011356v1   C 0 I 29
s chlSab2.chr17             28246634 1 -  71996105 -----g
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1789262 6 -   3067355 gaaggg
i colAng1.NW_012115566v1   C 0 I 2
s saiBol1.JH378348            166484 6 -    375362 gaaggg
i saiBol1.JH378348         C 0 I 6
s aotNan1.NW_018494050v1      105007 6 -    285216 gaaggg
i aotNan1.NW_018494050v1   C 0 I 6
e canFam3.chr35             25852901 45 +  26524999 I
e otoGar3.GL873742           1480555 0 -   2232465 C
e cebCap1.NW_016108108v1      157189 14842 -    373274 T
e calJac3.chr4             171318829 9442 - 171630274 I
e manLeu1.NW_012104165v1     1914690 752 +   2316924 I
e cerAty1.NW_012001495v1     1792328 62 -   2157725 I
e macFas5.chr4              28929709 15340 - 170955103 T

a score=5104.000000
s hg38.chr6_GL000254v2_alt     83543 2 +   4827813 gg
s panTro5.chr6              29054129 2 + 175400573 gg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29298183 2 + 173848474 gg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5098243 2 +   6154872 gg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74104081 2 + 122973662 aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280974 2 + 172585720 gg
i rheMac8.chr4             I 4 I 3
s colAng1.NW_012115566v1     1789270 2 -   3067355 gg
i colAng1.NW_012115566v1   I 2 C 0
s saiBol1.JH378348            166496 2 -    375362 gg
i saiBol1.JH378348         I 6 C 0
s aotNan1.NW_018494050v1      105019 2 -    285216 gg
i aotNan1.NW_018494050v1   I 6 C 0
e canFam3.chr35             25852901 45 +  26524999 I
e otoGar3.GL873742           1480555 0 -   2232465 C
e cebCap1.NW_016108108v1      157189 14842 -    373274 T
e calJac3.chr4             171318829 9442 - 171630274 I
e manLeu1.NW_012104165v1     1914690 752 +   2316924 I
e chlSab2.chr17             28246635 0 -  71996105 C
e cerAty1.NW_012001495v1     1792328 62 -   2157725 I
e macNem1.NW_012011356v1     1907129 29 -   2996164 I
e macFas5.chr4              28929709 15340 - 170955103 T

a score=28143.000000
s hg38.chr6_GL000254v2_alt     83545 9 +   4827813 gagaagagg
s panTro5.chr6              29054131 9 + 175400573 gagaagagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29298185 9 + 173848474 aggaagagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5098245 9 +   6154872 gagaagagg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74104083 9 + 122973662 gagaagaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280979 9 + 172585720 gagaagaga
i rheMac8.chr4             I 3 C 0
s chlSab2.chr17             28246635 4 -  71996105 -----gagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1915442 9 +   2316924 gagaagaga
i manLeu1.NW_012104165v1   I 752 C 0
s colAng1.NW_012115566v1     1789272 7 -   3067355 --ggagaga
i colAng1.NW_012115566v1   C 0 I 2
s saiBol1.JH378348            166498 9 -    375362 aagAAAAGG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      105021 9 -    285216 aagaaaagg
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25852901 45 +  26524999 I
e otoGar3.GL873742           1480555 0 -   2232465 C
e cebCap1.NW_016108108v1      157189 14842 -    373274 T
e calJac3.chr4             171318829 9442 - 171630274 I
e cerAty1.NW_012001495v1     1792328 62 -   2157725 I
e macNem1.NW_012011356v1     1907129 29 -   2996164 I
e macFas5.chr4              28929709 15340 - 170955103 T

a score=3971.000000
s hg38.chr6_GL000254v2_alt     83554 1 +   4827813 g
s panTro5.chr6              29054140 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29298194 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5098254 1 +   6154872 g
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74104092 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280988 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1792390 1 -   2157725 g
i cerAty1.NW_012001495v1   I 62 C 0
s chlSab2.chr17             28246639 1 -  71996105 g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1915451 1 +   2316924 g
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1789281 1 -   3067355 a
i colAng1.NW_012115566v1   I 2 C 0
s saiBol1.JH378348            166507 1 -    375362 G
i saiBol1.JH378348         C 0 I 6
s aotNan1.NW_018494050v1      105030 1 -    285216 g
i aotNan1.NW_018494050v1   C 0 I 10
e canFam3.chr35             25852901 45 +  26524999 I
e otoGar3.GL873742           1480555 0 -   2232465 C
e cebCap1.NW_016108108v1      157189 14842 -    373274 T
e calJac3.chr4             171318829 9442 - 171630274 I
e macNem1.NW_012011356v1     1907129 29 -   2996164 I
e macFas5.chr4              28929709 15340 - 170955103 T

a score=22698.000000
s hg38.chr6_GL000254v2_alt     83555 3 +   4827813 gag
s panTro5.chr6              29054141 3 + 175400573 gag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29298195 3 + 173848474 gag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5098255 3 +   6154872 gag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74104093 3 + 122973662 gag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280989 3 + 172585720 gag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28914369 3 - 170955103 gag
i macFas5.chr4             T 15340 C 0
s cerAty1.NW_012001495v1     1792391 3 -   2157725 gag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28246640 3 -  71996105 gag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1915452 3 +   2316924 gag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1789282 3 -   3067355 gag
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            166514 3 -    375362 GAG
i saiBol1.JH378348         I 6 C 0
s aotNan1.NW_018494050v1      105041 3 -    285216 gag
i aotNan1.NW_018494050v1   I 10 C 0
e canFam3.chr35             25852901 45 +  26524999 I
e otoGar3.GL873742           1480555 0 -   2232465 C
e cebCap1.NW_016108108v1      157189 14842 -    373274 T
e calJac3.chr4             171318829 9442 - 171630274 I
e macNem1.NW_012011356v1     1907129 29 -   2996164 I

a score=121422.000000
s hg38.chr6_GL000254v2_alt     83558 28 +   4827813 acgaggggagaagaggggaggggagggg
s panTro5.chr6              29054144 28 + 175400573 acgaggggagaagaggggaggtgatggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29298198 28 + 173848474 acgaggggagaagaggggaggtgagggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5098258 28 +   6154872 acgaggggagaagaggggaggggagggg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74104096 24 + 122973662 aagagGAG----GGGGGGAGGGGATGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29280992 27 + 172585720 gggagggaaggggagg-gaggggagggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28914372 28 - 170955103 aaaaggagacgggaggtgaggggaaggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1907158 28 -   2996164 aggagaagagaggaggggaggggagggg
i macNem1.NW_012011356v1   I 29 C 0
s cerAty1.NW_012001495v1     1792394 28 -   2157725 aAGAGAggaggggaggggaggggagggg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28246643 21 -  71996105 gggag-------gggaAGAGAGGAGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1915455 28 +   2316924 gggagaagagaagaggggaggggagggg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1789285 28 -   3067355 aagagaggaggggagggaaggggagggg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            166517 28 -    375362 AAAAGGGGTTGAGAAGTGAGAGGAGGGG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      105044 28 -    285216 aaaaggggatgggaggtgagaggagggg
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480555  3 -   2232465 -------------------------GAA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25852901 45 +  26524999 I
e cebCap1.NW_016108108v1      157189 14842 -    373274 T
e calJac3.chr4             171318829 9442 - 171630274 I

a score=753243.000000
s hg38.chr6_GL000254v2_alt     83586 87 +   4827813 aagggaTTCATAAGGCGT--GAATGAAAAACAGCTATGGGGATGGAGAGAAGGGTTGAATTATGAGAATAAGACCGAAGATAAATACAA
s panTro5.chr6              29054172 87 + 175400573 aagggaTTCATAAGGCGT--GAATGAAAAACAGCTATGGGGATGGAGAGAAGGGTTGAATTATGAGAATAAGACCGAAGATAAATACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29298226 87 + 173848474 aagggaTTCATAAGGCGT--GAATGAAAAACAGCTATGGGGATGGAGAGAAGGGTTGAATTATGAGAATAAGACCGAAGATAAATACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5098286 87 +   6154872 aagggaTTCATAAGGCGT--GAATGAAAAACAGCTATGGGGATGGAGAGAAGGGTTGAATTATGAGAATAAGACCGAAGATAAATACAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74104120 87 + 122973662 AAGGGATTCATAAGGCGT--GAATGAAAAACAGCTATGGGGATGGAGAGAAGGGTTTAATTATGAGAATAAGACCGAAAATAAATACAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29281019 86 + 172585720 aggggaTTCATAAGGCGT--GAATG-AAAACAGCTATGGGGATGGAGAGAAGGGTTGAATTATGAGAATAAGACCGAAGATAAATACAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28914400 87 - 170955103 agggaATTCATAAGGCAT--AAATGAAAAACAGCTTTGGGGGTGAAGAGGAGGGTTGAATTATGAGAGTAAGATGAAAGATAAATAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1907186 87 -   2996164 aggggaTTCATAAGGCGT--GAATGAAAAACAGCTATGGGGATGGAGAGAAGGGTTGAATTATGAGAATAAGACCGAAGATAAATACAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1792422 87 -   2157725 aggggaTTCATAAGGCGT--GAATGAAAAACAGCTATGGGGATGGAGAGAAGGGTTGAATTATGAGAATAAGACCGAAGATAAATACAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28246664 87 -  71996105 AGGGGATTCATAAGGCGT--GAATGAAAAACAGCTATAGGGTTGGAGAGAAGGGTTGAGTTATGAGAATAAGACCGAAGATAAATACCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1915483 87 +   2316924 aggggaTTCATAAGGCGT--GAATGAAAAACAGCTATGGGGATGGAGAGAAGGGTTGAATTATGAGAATAAGACCGAAGATAAATACAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1789313 87 -   3067355 aagggaTTCATAAGGCGT--AAATGAAAAACGGCTATGGGGATGGAGAGAAGGGTTGAATTATGAGAATAAGATCGAAGATAAATACAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            166545 86 -    375362 ACGGAATTCATAAGGCAT--AAGTGAAAACCAGCTTTGGGGGTGCAGAGAACGATTGA-CTATGAGAGTAAGATGAAAGATAAATAGAA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      105072 86 -    285216 agggaATTCATTAGGCAT--GAATGAAAACCAGCTTTGGGGGTGCAGAGAAGGGATGA-CTATGAGAGTAAGAGGTAAGATAAATAGAA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480558 89 -   2232465 GAGAGATTCATAAGGTGTGGGAGTAAAGGACAGTTTCAGGGAAGGAGAGAAGAGTTGAATTATGAGAGTGAGACTTAAGATAAACAGGA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25852946 84 +  26524999 AAGACATTCATAAGGCAT--GAATT---AACAGCTTCAGGGATGGACAGAAGTGTTGAATTGTGAGAGTAAGACCAaagataaacctaa
i canFam3.chr35            I 45 I 244
e cebCap1.NW_016108108v1      157189 14842 -    373274 T
e calJac3.chr4             171318829 9442 - 171630274 I

a score=90069.000000
s hg38.chr6_GL000254v2_alt     83673 13 +   4827813 AC--AGGGTTGAAGA------------------
s panTro5.chr6              29054259 13 + 175400573 AC--AGGGTTGAAGA------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29298313 13 + 173848474 AC--AGGGTTGAAGA------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5098373 13 +   6154872 AC--AGGGTTGAAGA------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74104207 13 + 122973662 AC--AGGGTTGAAGA------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29281105 13 + 172585720 AC--AGGATTGAAGA------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28914487 13 - 170955103 GT--AGGATTGAAGA------------------
i macFas5.chr4             C 0 I 16300
s macNem1.NW_012011356v1     1907273 13 -   2996164 AC--AGGATTGAAGA------------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1792509 13 -   2157725 AC--AGGATTGAAGA------------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28246751 13 -  71996105 AC--AGGATTGAAGA------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1915570 13 +   2316924 AC--AGGATTGAAGA------------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1789400 13 -   3067355 AC--AGGATTGAAGA------------------
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            166631 13 -    375362 AC--AGGATTGAAGA------------------
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      105158 13 -    285216 AC--AGGATTGAAGA------------------
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480647 33 -   2232465 TTTAAGGGATAAAGACAAAAAAGCGGGTGAAGC
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e cebCap1.NW_016108108v1      157189 14842 -    373274 T
e calJac3.chr4             171318829 9442 - 171630274 I

a score=5125022.000000
s hg38.chr6_GL000254v2_alt     83686 673 +   4827813 ATG-CTTTAG--AAAAACAAAC------------------------------ACA-GCAGGTGCAG--AAAAGGGGAGAGGTTTTAA-CAGCTCTTTTAGGAATGAGAGATAGACTGGAAGATGGAGAAG--ATGAGTTAGTTTGGCTCATACTCAATTTAAAGTATCTGTGGGGCACACTTGTGAGGATGTTTCTCAGAGAATTCAGGCAATTAACTCTGTCTCTAGCCTGGGATTTGTAAGC-ATTAATAGTAGTAGACACATTACATGGAGGATGGATAAAGACTAAAAAAGTGTACTTTGAGATATGGAAATTACAAACCTATTCGTGATATTTGTAGT-------GAACAAACAAGTTTGTTTGTTCTTGAATTCAAAAGTTCTTGAATCTTGGGACTTATCG----------TGTGTCCTTTGAATTACATAAGAAGATGAGAAGAAAACCTATTTCTCAGCACCAAATTTCTAGTGACTATTAACTCTTTCTCATTCTGGTTTGCCTATATAAGAGCCTTTGCCAATGTTAATAAAGTAACATTGATGGCTTTCAAAATTGCCAAATTGCAAGTTGTATGTCAGAC--TTGGCTTTTCAGTTGGCTGATGGGATTTCTAGAATAAAAATAGGAAACACTGAGTGATAGACTTCACTGAAGGAGAAA-CTAGAGAATTGTTATAGACAAAATTGATGTGTATTCATGTGTGTTTGCCTGCCTGACTG
s panTro5.chr6              29054272 664 + 175400573 ATG-CTTTAG--AAAAACAAAC------------------------------ACAAGCAGGTGCAG--AAAAGGGGAGAGGTTTTAA-CAGCTCTTTTAGGAATGAGAGATAGATTGGAAGATGGAGAAG--ATGAGTTAGTTTGGCTCATACTCAATTTAAAGTATCTGTGGGGCACACTTGTGAGGATGTTACTCAGAGAATTCAGGCAATTAACTCTGTCTCTAGCCTGGGATTTGTAAGC-ATTAATAGTAGTAGACACATTACATGGAGGATGGATAAAGACTAAAAA-GTGTACTTTGAGATATGGAAATTACAAACCTATTCGTGATATTTGTAGT-------GAACAAACAAGTTTGTTC---------CTAAAAAGTTCTTGAATCTTGGGACTTATCG----------TGTGTCCTTTGAATTACATAAGAAGATGAGAAGAAAACCTATTTCTCAGCACCAAATTTCTAGTGACTATTAACTCTTTCTCATTCTGGTTTGCCTATATAAGAGCCTTTGCCAATGTTAATAAAGTAACATTGATGCCTTTCAAAATTGCCAAATTGCAAGTTGTATGTCAGAC--TTGGCTTTTCAGTTGGCTGATGGGATTTCTAGAATAAAAATAGGAAACACTGAGTGATAGATTTCACTGAAGGAGAAA-CTAGAGAATTGTTATAGACAAAATTGATGTGTATTCATGTGTGTTTGCCTGCCTGACTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29298326 664 + 173848474 ATG-CTTTAG--AAAAACAAAC------------------------------ACAAGCAGGTGCAG--AAAAGGGGAGAGGTTTTAA-CAGCTCTTTTAGGAATGAGAGATAGATTGGAAGATGGAGAAG--ATGAGTTAGTTTGGCTCATACTCAATTTAAAGTATCTGTGGGGCACACTTGTGAGGATGTTACTCAGAGAATTCAGGCAATTAACTCTGTCTCTAGCCTGGGATTTGTAAGC-ATTAATAGTAGTAGACACATTACATGGAGGATGGATAAAGACTAAAAA-GTGTACTTTGAGATATGGAAATTACAAACCTATTCGTGATATTTGTAGT-------GAACAAACAAGTTCGTTC---------CTAAAAAGTTCTTGAATCTTGGGACTTATCG----------TGTGTCCTTTGAATTACATAAGAAGATGAGAAGAAAACCTATTTCTCAGCACCAAATTTCTAGTGACTATTAACTCTTTCTCATTCTGGTTTGCCTATATAAGAGCCTTTGCCAATGTTAATAAAGTAACATTGATGCCTTTCAAAATTGCCAAATTGCAAGTTGTATGTCAGAC--TTGGCTTTTCAGTTGGCTGATGGGATTTCTAGAATAAAAATAGGAAACACTGAGTGATAGATTTCACTGAAGGAGAAA-CTAGAGAATTGTTATAGACAAAATTGATGTGTATTCATGTGTGTTTGCCTGCCTGACTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5098386 664 +   6154872 ATG-CTTTAG--AAAAACAAAC------------------------------ACAAGCAGGTGCAG--AAAAGGGGAGAGGTTTTAA-CAGCTCTTTTAGGAATGAGAGATAGATTGGAAGATGGAGAAG--ATGAGTTAGTTTGGCTCACACTCAATTTAAAGTATCTGTGGGGCACACTTGTGAGGATGTTACTCAGAGAATTCAGACAATTAACTCTGTCTCTAGCCTGGGATTTGTAAGC-ATTAATAGTAGTAGACTCATTACATGGAGGATGGATAAAGACTAAAAG-GTGTACTTTGAGATATGGAAATTACAAACATATTCGTGATATTTGTAGT-------CAACAAACAAGTTTGTTC---------CTAAAAAGTTCTTGAATCTTGGGACTTATCG----------TGTGTCCTTTGAATTATATAAGAAGATGAGAAGAAAATCTATTTCTCAGCGCCAAATTTCTAGTGACTATTAACTCTTTCTCATTCTGGTTTGCCTATATAAGAGCCTTTGCCAATGTTAATAAAGTAACATTGATGCCTTTCAAAATTGCCAAATTGCAAGTTGTATGTCAGAC--TTGGCTTTTCAGTTGGCTGATGGGATTTCTAGAATAAAAATAGGAAACACTGAGTGATAGATTTCACTGAAGGAGAAA-CTAGAGAATTGTTATATACAAAATTGAtgtgtattcgtgtgtgtttgcctgcctgactg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74104220 663 + 122973662 ATG-GTTTAG--AAAAACAAAC------------------------------ACAAGCAGGTGCAG--AAAAGGGGAGAGGTTTTAA-CAGCTCTTTTAGGAATGAGAGATAGATTGGAAGATTGAGAAG--ACGAGTTAGTTTGGCTCATACTAAATTTAAAGTATCTGTGGGGCACGCTTGTGAGGATGTTACACAGAGAACTCAGGCAATTAACTCCATCTCCAGCCTGGGATTTGTAAGC-ATTAGTAGTAGTAGACACATTACATGGAGGATGGATAAAGACTAAAAA-GTGTACTTTGAGATATGGAAATTACAAACCTATTCGTGATATTTGTAGT-------CAACAAACAAGTTTGTTC---------CTAAAAGG-TCTTGAATCTTGGTACTTATCA----------TGTGTCCTTTGAACTATGTAAGAAGATGAGAAGAAAACCCATTTCTCAGCACCAAATTTCTGGTGACTATTAACTCTTTCTCATTCTGGTTTGCCCATATGAGAGACTTCGCCAATGTTAATAAAATAACATTGATGCCTTTCAAAATTGGCAGATTGCAAGTTGTATGGCAGAC--TTGGCTTTTCAGTTGGCTGATGGGATTTCTAGAATAAAAATAGGAAACACTGAGTGATAGATTTCACTGAAGGAGAAA-CTAGAGAATTGCTATACACAAAATTGATGTGTATTCATGTGTGTTTGCCTGCCTGAATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29281118 674 + 172585720 ATG-GTTTAA--AAAAACAAAG-------------------TATTGCCAAACACAAGCA-GTGCAGGAAAGGGGGGAGAGGTTTTAA-CAG--CTTTTAGGAATGGGAGAAAGATTGGAAGATGGAGATG---------AGTTTGGCTCATACTAAATTTAAAGTATCTGTGGGGCACGTTTGTGAGGATGTTACATAGAGAATTCAGGCAATTAACTCCTTCTCCAGCCTGGGATTTGTAAGC-GTTAGTAGTAGTAGACACATTACATGGAGGATGGATAAAGACTAAAAA-GTGTACTTTGAGATATGGAAATTAGAAACCTATTCGTGATATTTGTAACATATTTGTAACAAACAAGTTTGTTC---------CTAAGAAGTTCTTGAATCTTGGGACTTATTG----------TGTGTCCTTTGAACTATATAAGAAGATGAGAAGAAAACCCATTTCTCAGCACCAAATTTCTAGTGACTATTAACTCTTTCTCATTCTGGTTTGCCCACATACGAGCCTTTGCCAATGTTAATAAAATAACATTGATGCCTTTAACAACTGGCAGATTGCAAGTTGTGTGGCAGAC--TTGGCTTTTCAGTTGGCTGATGGGATTTCTAGAACAAAAATAGGAAACACCGAGTGATAGATTTCACTGAAGGAGAAA-CTAGAAAATTGTTATATACAAAATTGATGTGTATTCATGTGTGTTTGCCTGCCTAACTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28930800 673 - 170955103 ATG-GTTTAA--AAAAACAAAG-------------------TATTGCCAAACACAAGCAGGTGCAG--AAAGGGGGAGAGGTTTTAA-CAG--CTTTTAGGAATGGGAGAAAGATTGGAAGATGGAGATG---------AGTTTGGCTCATACTAAATTTAAAGTATCTGTGGGGCACGTTTGTGAGGATGTTACATAGAGAATTCAGGCAATTAACTCCTTCTCCAGCCTGGGATTTGTAAGC-GTTAGTAGTAGTAGACACATTACATGGAGGATGGATAAAGACTAAAAA-GTGTACTTTGAGATATGGAAATTAGAAACCTATTCGTGATATTTGTAACATATTTGTAACAAACAAGTTTGTTC---------CTAAGAAGTTCTTGAATCTTGGGACTTATTG----------TGTGTCCTTTGAACTATATAAGAAGATGAGAAGAAAACCCATTTCTCAGCACCAAATTTCTAGTGACTATTAACTCTTTCTCATTCTGGTTTGCCCACATACGAGCCTTTGCCAATGTTAATAAAATAACATTGATGCCTTTAACAACTGGCAGATTGCAAGTTGTGTGGCAGAC--TTGGCTTTTCAGTTGGCTGATGGGATTTCTAGAACAAAAATAGGAAACACCGAGTGATAGATTTCACTGAAGGAGAAA-CTAGAAAATTGTTATATACAAAATTGATGTGTATTCATGTGTGTTTGCCTGCCTAACTC
i macFas5.chr4             I 16300 C 0
s macNem1.NW_012011356v1     1907286 666 -   2996164 ATG-GTTTAA--AAAAACAAAG-------------------TATTGCCAAACACAAGCAGGTGCAG--AAAGGGGGAGAGGTTTTAA-CAG--CTTTTAGGAATGGGAGATAGATTGGAAGATGGAGATG---------AGTTTGGCTCATACTAAATTTAAAGTATCTGTGGGGCACGTTTGTGAGGATGTTACATAGAGAATTCAGGCAATTAACTCCGTCTCCAGCCTGGGATTTGTAAGC-GTTAGTAGTAGTAGACACATTACATGGAGGATGGATAAAGACTAAAAA-GTGTACTTTGAGATATGGAAATTAGAAACCTATTCGTGATATTTGTAGT-------CAACAAACAAGTTTGTTC---------CTAAGAAGTTCTTGAATCTTGGGACTTATTG----------TGTGTCCTTTGAACTATATAAGAAGATGAGAAGAAAACCCATTTCTCAGCACCAAATTTCTAGTGACTATTAACTCTTTCTCATTCTGGTTTGCCCACATACGAGCCTTTGCCAATGTTAATAAAATAACATTGATGCCTTTAACAACTGGCAGATTGCAAGTTGTGTGGCAGAC--TTGGCTTTTCAGTTGGCTGATGGGATTTCTAGAACAAAAATAGGAAACACTGAGTGATAGATTTCACTGAAGGAGAAA-CTAGAAAATTGTTATATACAAAATTGATGTGTATTCATGTGTGTTTGCCTGCCTAACTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1792522 666 -   2157725 ATG-GTTTAA--AAAAACAAAG-------------------TATTGCCAAACACAAGCAGGTGCAG--AAAAGGGGAGAGGTTTTAA-CAG--CTTTTAGGAATGGGAGATAGATTGGAAGATGGAGACG---------ACTTTGGCTCATACTAAATTTAAAGTATCTGTGGGGCACGTTTGTGAGGATGTTACATAGAGAATTCAGGCAATTAACTCCGTCTCCAGCCTGGGATTTGTAAGA-GTTAGTAGTAGTAGACACATTACATGGAGGATGGATAAAGACTAAAAA-GTGTACTTTGAGATATGGAAATTAGAAACCTATTCGTGATATTTGTAGT-------CAACAAACAAGTTTGTTC---------CTAAGAAGTTCTTGAATCTTGGGACTTATTG----------TGTGTCCTTTGAACTATATAAGAAGATGAGAAGAAAACCCATTTCTCAGCACCAAATTTCTAGTGACTATTAACTCTTTCTCATTCTGGTTTGCCCACATACGAGCCTTTGCCAATGTTAATAAAATAACATTGATGCCTTTAACAACTGGCAGATTGCAAGTTGTGTGGCAGAC--TTGGCTTTTCAGTTGGCTGATGGGATTTCTAGAACAAAAATAGGAAACACTGAGTGATAGATTTCACTGAAGGAGAAA-CTGGAAAATTGTTATATACAAAATTGACGTGTATTCACGTGTGTTTGCCTGCCTAACTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28246764 672 -  71996105 ATG-GTTTAA--AAAAACAAAG--TC---------------TATTGCCAAGCACAAGCAGGTGCAG--AAAAGGGGAGAGGTTTTAA-CAG--CTTTTAGGAATGGGAGATAGATTGGAAGATGGAGATG-----AGTTAGTTTGGCTCATACTAAATTTAAAGTATCTGTGGGGCACGTTTGTGAGGATGTTACATAGAGAACTCAGGCAATTAACTCCATCTCCAGCCTGGGATTTGTAAGC-GTTAGTAGTAGTAGACACATTACATGGAGGATGGATAAAGACTAAAAA-GTGTACTTTGAGATATGGAAATCAGAAACGTATTCGTGATATTTGTAGT-------CAACAAACAAGTTTGTTC---------CTAAGAAGTTATTGAATCTTGGGACTTATTG----------TGTGTCCTTTGAACTATATAAGAAGATGAGAAGAAAACCCATTTCTCAGCACCAAATTTCTAGTGACTATTAACTCTTTCTCATTCTGGTTTGCCCACATACGAGCCTTTGCCAATGTTAATAAAATAACATTGATGCCTTTAACAACTGGCAGATTGCAAGTTGTGTGGCAGAC--TTGGCTTTTCAGTTGGCTAATGGGATTTCGAGAACAAAAATAGGAAACACTGAGTGATAGATTTCACTGAAGGAGAAA-CTAGAAAATTGTTATATACAAAATTGATGTGTATTCATGTGTGTTTGCCTGCCTAACTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1915583 666 +   2316924 ATG-GTTTAA--AAAAACAAAG-------------------TATTGCCAAACACAAGCAGGTGCAG--AAAAGGGGAGAGGTTTTAA-CAG--CTTTTAGGAATGGGAGATAGATTGGAAGATGGAGACG---------AGTTTGGCTCATACTAAATTTAAAGTATCTGTGGGGCACGTTTGTGAGGATGTTACATAGAGAATTCAGGCAATTAACTCCGTCTCCAGCCTGGGATTTGTAAGA-GTTAGTAGTAGTAGACACATTACATGGAGGATGGATAAAGACTAAAAA-GTGTACTTTGAGATATGGAAATTAGAAACCTATTCGTGATATTTGTAGT-------CAACAAACAAGTTTGTTC---------CTAAGAAGTTCTTGAATCTTGGGACTTATTG----------TGTGTCCTTTGAACTATATAAGAAGATGAGAAGAAAACCCATTTCTCAGCACCAAATTTCTAGTGACTATTAACTCTTTCTCATTCTGGTTTGCCCACATACGAGCCTTTGCCAATGTTAATAAAATAACATTGATGCCTTTAACAACTGGCAGATTGCAAGTTGTGTGGCAGAC--TTGGCTTTTCAGTTGGCTGATGGGGTTTCTAGAACAAAAATAGGAAACACTGAGTGATAGATTTCACTGAAGGAGAAA-CTGGAAAGTTGTTATATACAAAATTGACGTGTATTCACGTGTGTTTGCCTGCCTAACTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1789413 672 -   3067355 ATG-GTTTAA--AAAAACAAAG--TC---------------TATTGCCAAACACAGGCAGGTGCAG--AAAAGGGGAGAGGTTTTAA-CAG--CTTTTAGGAATGGGAGATAGATTGGAAGATGGAAATG-----AGTTAGTTTGGCTCATACTAAATTTAAAGTATCTGTGGGGCACGTTTGTGAGGATGTTACATAGAGAACTCAGGCAATTAACTCCGTCTCCAGCCTGGGATTTGTAAGC-ATTAGCAGTAGTAGACACATTACATGGAGGATGAATAAAGACTTTTAA-GTGTACTTTGAGATATAGAAATTAGAAACCTATTCGTGATATTTGTAGT-------CAACAAACAAGTTTGTTC---------CTAAGAAGTTCTTGAATCTTGGAACTTATTG----------TGTGTCCTTTGAACTACATAAGAATATGAGAAGAAAACCCATTTCTCAGCACCAAATTTCTAGTGACTATTAACTCTTGCTCATTCTGGTTTGCCCATATACGAGCCTTTGCCAATGTTAACAAAACAACATTGATGCCTTTAAAAACTGGCAGATTGCAAGTTGTGTGGCAGAC--TTGGCTTTTCAGTTGGCTGATGGGATCTCTAGAATAAAAATAGGAAACACTGAATGATAGATTTCACTGAAGGAGAAA-CTAGAAAATTGTTATATACAAAACTGATGTGTATTCATGTGTGTTTGCCTGCCTAACTC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            166644 676 -    375362 ATG-GTTCAGAAAAAAACAAACATGC---------------TATTGCCAAACACAAGCAGGTGCAG--AAAAGGG--AAGGTTTTAC-CGACACTTTCAGGAGTGGGAGAAAGATTGGAAGATGGAGAAG--ATGAGTTAGTTAGGGTCATGTGAAATTTAGAGTATCTGTGGGGCACA-TTGCAAGGATGCTACACAGAGATCTCAGGCAATGGACTCTGTCTCCAGCCTGGGACTTGTGAGT-ATTATTAGTAGCAGACACATTGCATGGAGG-TGGATAAAGACTAAAAA-GTACCCTTTTAGATTTGGGAATTACAAACGTTTTCATG---TTTGTAGG-------AAACAAACAAGTTTGCTC---------CTAAATAGTTCTTGAATCTTGGGACTTATGT----TAAGACTGTGTTCTTTAAACTATATGAAAAGATGAGAAGAGAACCCATTTCCTGGCACAAAATTTCTAGGGGATATTAACTCTTTCTCTTTCTAGTTTGCCCATATAAGAGCCTTTGCTAATGTTAATAAAATAACATTGATGCCTTTCAAAGTTGGCAGATTGCAAGTTGTATGGCAGAC--TTGTC----CAGTTGGCTGATGGGATTTCTAGATTAAAAGTAGGAAACACTGATTGACAGGTTTCCCTGAGGGAGGCA-CTAGAGAAGTGTTACACACAAAACTGACgtgtatccatgtgtgtttgtctgcttgtctg
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      105171 677 -    285216 ATG-GTTCAG--AAAAACAAACATGC---------------TATTGCCAAACACAAGGAGGTGCAG--AAAACGG--AAGGTTTTAT-CAACTCTTTTAGGAGTGGGAGAAAGACTGGAAGATAGAGAAG--ATGAGTTAGTTGGGGTCATGTGAAATTTAGAATATCTGTGGGGCACACTTGTGAAGACGCTACACAGAGATCTCAGGCAACTGACTCTGTCTCCAGCCTGGGACTTGTGAGT-ATTAGTAATAGTGGACACATTGCATGGAGG-TGGATAAAGACTAAAAA-GTGTCCTTTTAGATTTGGGAATTACAAACTTGTTCATGATATTTGTAGG-------AAACAAACAAGTTTGCTC---------CTAAATAGTTCTTGAATCTTGGGACTTATAT----TAAGACTGTGTTCTCTGAACTATATAAAAAGATGAGAAGAAAATCCACTTCCCAGCACAACACTTCTAGTGGCTATTAACTCTTTCTCATTCTGTTTTGCCCATATATGAGCCTTTGCTAATGTTAATAAAATAACATTGATGCCTTTCAAAACTGGCAGATTGCAAGTTGTATGGCAGAC--TTGTC-CTTCAGCGGGTTGATGAGATTTCTAGAATAAAAATAGGAAACACTGAGTGACAGGCTTCCCTGAAGGAGGGA-CTAGAGAAGTGTTACACACAAAATTGACGTGTATCCAtgtgtgtttatttgcctg----
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1480680 700 -   2232465 ATGTATTTAG--GAAAGCAAACAAACATACATACAAACAAACATTACCAAACAGAATGAGGTGTAA--AAATGGGGAAGTTTTTTGATCAGCTCTTTTAGGAATAGAAGGAAGATTGGAAAATAGAAAACAAATGAGCTAGCTCAGCTCATCTTAAATTCAGTGTATCTGTGGGACAGAGTTGTGAAGATGTTACACAGCCAACTCAGGCAATTAA-------TTGATCTAGGGATTTGTGGGTAATCATTAGGCATACATGTGGAAAGTGGAAAGTGGACAAAGGCCAAAAA-GTATGCTTTGAGATTTGGGGATTACAAACCTATTTGTTTTATTTGTAGG-------GAACAAATAAATTTGCTC---------CTAGGCAAAT-TTGAACCCTGGCAATTATCATAATTAAGACTGGGTTCTTTGAACTACATAAGAAGATTAAAAGAAAATACATTTCTTGGCACCAGATTCCTGGTGGCTACTGACTTTTTCTCATTCTGGTTTGCTCATACGTGAACTTTTACCACCATTCATAAAATAACATTGATTCCTTTTGAAATTGGCAGAATATGAGTTGTGTGACAGACTTTTATCCTTTTAGTTAGCTCATGGGATTTTTAGAATAAAAATGGGAAAAAGAAAGTGA----TTTCACTGAAGAAAAGATTTAGAGAATCATCACATACAAAACTGATGGGTGTGTATGTGTGTTTGCTTGTCTATCCA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e cebCap1.NW_016108108v1      157189 14842 -    373274 T
e calJac3.chr4             171318829 9442 - 171630274 I

a score=787699.000000
s hg38.chr6_GL000254v2_alt     84359 91 +   4827813 TGTC--TGTGTG--------TGTGCATGTAAATGATGGGAAGGATTATCTTGGCTCTTTGATGCTGTAAAAGCAATATTAGGACAGTTTGCAGAAACTCTC
s panTro5.chr6              29054936 91 + 175400573 TGTC--TGCGTG--------TGTGCATGTAAATGATGGGAAGGATTATCTTGGCTCTTCGATGCTGTAAAAGCAATATTAGGACAGTTTGCAGAAACTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29298990 91 + 173848474 TGTC--TGCGTG--------TGTGCATGTAAATGATGGGAAGGATTATCTTGGCTCTTTGATGCTGTAAAAGCAATATTAGGACAGTTTGCAGAAACTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5099050 91 +   6154872 tgtc--tgtgtg--------tgtgCATGTAAATGATGGGAAGGATTATCTTGGCTCTTTGATGCTGTAAAAGCAATATTAGGACAGTTTGCAGAAACTCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74104883 91 + 122973662 TGTC--TGTGTG--------TGTGCATGTAAATGATGGGAAGGATTATCTAGGATCATTGATGCTGTAAAAGCTATATTAGGACGGTTTGCAGAAAGTCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29281792 87 + 172585720 TGTC--T--GTG--------TGTGCATGTAAATGATGGGAAGGATTATCTTGGCTCTTTGATGCTGTAAAAGCAATATTAGCACAGTTTGCAGAAA--CTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28931473 87 - 170955103 TGTC--T--GTG--------TGTGCATGTAAATGATGGGAAGGATTATCTTGGCTCTTTGATGCTGTAAAAGCAATATTAGCACAGTTTGCAGAAA--CTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1907952 87 -   2996164 TGTC--T--GTG--------TGTGCATGTAAATGATGGGAAGGATTATCTTGGCTCTTTGATGCTGTAAAAGCAATATTAGCACAGTTTGCAGAAA--CTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1793188 87 -   2157725 TGTC--T--GTG--------TGTGCATGTAAATGATGGGAAGGATTATCTTGGCTCTTTGATGCTGTAAAAGCAATATTAGCACAGTTTGCAGAAA--CTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28247436 87 -  71996105 TGTC--T--GTG--------TGTGCATGTAAATGATGGGAAGAATTATCTTGGCTCTTTGATGCTGTAAAAGCAATATTAGCACAGTTTGCAGAAA--CTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1916249 87 +   2316924 TGTC--T--GTG--------TGTGCATGTAAATGATGGGAAGGATTATCTTGGCTCTTTGATGCTGTAAGAGCAATATTAGCACAGTTTGCAGAAA--CTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1790085 87 -   3067355 TGTC--T--GTG--------TGTGCATGTAAATGATGGGAAGGATTATCTTGGCTCTTTGATGCTGTAAAAGCAATATTAGCACAGTTTGCAGAAA--CTC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            167320 91 -    375362 tgtctgtgtgtg--------tgtgcctgtAAATGCTTGGGAGGATTATTTTGACTCTTTGATGCTGTAAAAGCAATATTAG--CAGTTTGCAGAAACATTC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      142347 90 -    373274 TGTC--TCTGTG--------TGTGCCTGTAAATGCTAGGGA-GATTATCTTGGCTCTTTGATGCTGTAAAAGCAACATTAGGACAGTTTGCAGAAACACTC
i cebCap1.NW_016108108v1   T 14842 I 831
s aotNan1.NW_018494050v1      105848 90 -    285216 tgtc--tgtgtg--------tgtgcatgtAAATGCTGGGGAGGATTATTTGGACTCTTCGATGCTGTAAAA-CAATATTAGGACAGTTTGCAGAAACAGTC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1481380 99 -   2232465 TGTG--CATGTGCTCTCACATGCACACGTAAATGCTGGGGAGGATTATCTTGACCATCTGATGCTGTAAAAGCAGTATTAGGACAGTTTGCAGAAACACAC
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=618668.000000
s hg38.chr6_GL000254v2_alt     84450 75 +   4827813 CTTCATCTTTATGTTGTGTTACACCCAGAGAAACTTGGCTGTCTATTGGATTCTTGGGAATTCATAATAAGAAGG---------
s panTro5.chr6              29055027 75 + 175400573 CTTCATCTTTATGTTGTGTTACACCCAGAGAAATTTGGCTGTCTACTGGATTCTTGGGAATTCATAATAAGAAGG---------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29299081 75 + 173848474 CTTCATCTTTATGTTGTGTTACACCCAGAGAAGTTTGGCTGTCTACTGGATTCTTGGGAATTCATAATAAGAAGG---------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5099141 72 +   6154872 CTTCATCTTTATGTTGTGTTACACCCAGAGAAACTTGGCTGTCTATTGGATTCTTGGGAATTC---ATAAGAAGG---------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74104974 75 + 122973662 CTTCATCTTTATGTTGTGTTACACCCGGAGAAACTTGGCTGTCTATTGGATTCTTGGGAATTCATAATAAGAAGA---------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29281879 75 + 172585720 CTTCATCTTTATGTTGTGTTACACCAAGAGAAACTTGGCCGTCTATTGGATTCTTGGGAATTCATAATAAGAAGG---------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28931560 75 - 170955103 CTTCATCTTTATGTTGTGTTACACCAAGAGAAACTTGGCCGTCTATTGGATTCTTGGGAATTCATAATAAGAAGG---------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1908039 75 -   2996164 CTTCATCTTTATGTTGTGTGACACCAAGAGAAACTTGGCCGTCTATTGGATTCTTGGGAATTCATAATAAGAAGG---------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1793275 75 -   2157725 CTTCATCTTTATGTTGTGTTACACCAAGAGAAACTTGGCTATCTATTGGATTCTTGGGAATTCATAATAAGAAGG---------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28247523 75 -  71996105 CTTCATCTTTACGTTATGTTACACCAAGAGAAACTTGGCCGTCTATTGGATTCTTGGGAATTCATAATAAGAAGG---------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1916336 75 +   2316924 CTTCATCTTTATGTTGTGTTACACCAAGAGAAACTTGGCTATCTATTGGATTCTTGGGAATTCATAATAAGAAGG---------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1790172 75 -   3067355 CTTCATCTTTATGTTGTGTTACACCAAGAGAAACTTGGCCGTCTATTGGATTCTTGGGAATTCATAATAAGAAGG---------
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            167411 75 -    375362 CTTCATCTTTATGTTGTGTCACACCCAGAGAAACCCGGCTGTCTATCAGATTCTTGGGAATTCATAATAAAAGGT---------
i saiBol1.JH378348         C 0 I 359
s aotNan1.NW_018494050v1      105938 75 -    285216 CTTCATCTTCATGTCGTGTCACACTCAGAGAAACCTGGCTGTCTATCAGATTCTTGGGAATTCGTAATAAGAAGG---------
i aotNan1.NW_018494050v1   C 0 I 13
s otoGar3.GL873742           1481479 81 -   2232465 ---CATCATTATGTTGTATTGCACTCAGAGAAACCTGGATATCTATTGGATACTTGGGAATTCATGGCAAGGTTTTTTTATTTT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e cebCap1.NW_016108108v1      142437 831 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=350299.000000
s hg38.chr6_GL000254v2_alt     84525 45 +   4827813 TTGCCTCATAAAAATGGGAGAATTTTAAATAATTAAATATCTGTA
s panTro5.chr6              29055102 45 + 175400573 TTGCATCATAAAAATGGGAGAATTTTAAATAATTAAATATCTGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29299156 45 + 173848474 TTGCCTCATAAAAATGGGAGAATTTTAAATAATTAAATATCTGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5099213 45 +   6154872 TTGCCTCATAAAAATGGGAGAATTTTAAATAATTAAATATCTGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74105049 45 + 122973662 TTGCCTCATAAAAATGGGAGAATTTTAAATAATTAAATATCTGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29281954 45 + 172585720 TTGCCTGATAAAAATGCGAGAATTTTAAATAATTAAGTATCTGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28931635 45 - 170955103 TTGCCTGATAAAAATGCGAGAATTTTAAATAATTAAGTATCTGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1908114 45 -   2996164 TTGCCTGATAAAAATGCGAGAATTTTAAATAATTAAGTATCTGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1793350 45 -   2157725 TTGCCTGATAAAAATGCGAGAATTTTAAATAATTAAGTATCTGTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28247598 45 -  71996105 TTGCCTGATAAAAATAGGAGAATTTTAAATAATTAAGTATCTGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1916411 45 +   2316924 TTGCCTGATAAAAATGCGAGAATTTTAAATAATTAAGTATCTGTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1790247 45 -   3067355 TTGCCTGATAAAAATGGGAGAATGTTAAATAATTAAGTATCTGTA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            167845 44 -    375362 TTGCCACACAGAAGGGGGa-aattttaaataattaaatatCTGTA
i saiBol1.JH378348         I 359 C 0
s aotNan1.NW_018494050v1      106026 44 -    285216 TTGCCACACAAAAGGGGGA-AATTTTAAATAATTGAATATCTGTA
i aotNan1.NW_018494050v1   I 13 C 0
s otoGar3.GL873742           1481560 45 -   2232465 TTGCCTCATAAAAATGGGAATTTTTAAAAAAATGAAATATCTGTA
i otoGar3.GL873742         C 0 I 30
e canFam3.chr35             25853030 244 +  26524999 I
e cebCap1.NW_016108108v1      142437 831 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=2101711.000000
s hg38.chr6_GL000254v2_alt     84570 301 +   4827813 GCTATCTTCAGACTATCTACCAGCAACACGATTGAAACATGTTTTTTGTGTGAAATCTGTAGGATGAGCTCATTTAACATAGCATTCTTCTGAGAAATTAAACATTTAATTTTGAAGACAGA-ACACCC---TGTCATACACACTCAATTTCGAAAACCTAAAAATATATAAAGTATatgtttaaatctgcactgtccaatatggttaccattagccacattgggtattgagtactgaaaattgcctagtctaagttaagatgtgttgaaagtgagaaatatataccagatttcaaagatgtaat
s panTro5.chr6              29055147 301 + 175400573 GCTATCTTCAGACTATCTACCAGCAACACGATTGAAACATGTTTTTTGTGTGAAATCTGTAGGATGAGCTCATTTAACATAGCATTCTTCTGAGAAATTAAACATTTAATTTTGAAGACAGA-ACACCC---TGTCATACACACTCAATTTCGAAAACCTAAAAATATGTAAAGTATatgtttaaatctgcactgtccaatatggttaccattagccacactgggtattgagtactgaaaattgcctagtctaagttaagatgtgttgaaagtgagaaatatataccagatttcaaagatgtaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29299201 301 + 173848474 GCTATCTTCAGACTATCTACCAGCAACACGATTGAAACATGTTTTTTGTGTGAAATCTGTAGGATGAGCTCATTTAACATAGCATTCTTCTGAGAAATTAAACATTTAATTTTGAAGACAGA-ACACCC---TGTCATACACACTCAATTTCGAAAACCTAAAAATATGTAAAGTATatgtttaaatctgcactgtccaatatggttaccattagccacactgggtattgagtactgaaaattgcctagtctaagttaagatgtgttgaaagtgagaaatatataccagatttcaaagatgtaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5099258 301 +   6154872 GCTATCTTCAGACTATCTACCAGCAACACGATTGAAACATGTTTTTTGTGTGAAATCTGTAGGATGAGCTCATTTAACATAGCATTCTTCTGAGAAATTAAACATTTAATTTTGAAGACAGA-ACACCC---TGTCATACACACTCAATTTCGAAAACCTAAAAATATGTAAAGTATatgtttaaatctgcaccgtccaatatggttaccattagccacattgggtattgagtactgaaaattgcctagtctaagttaagatgtgttgaaagtgagaaatatataccagatttcaaagatgtaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74105094 301 + 122973662 GCTATCTTCAGACTATCTACCAACAACACGATTGAAACATGTTTTTTGTGTGAAATCTGTAGGATGAGCTCATTTAACACAGCATTCTTCTGAGAAATTAAACATTTAATTTTGAAGACAGA-ACACCC---TGTCATACATACTCAATTTCAAAAACCTAAAAATATGTAAAGTATATCtttaaatctgcactgtccaacatggttaccattagccacattgggtattgagtagtgcaaattgcttagtctaagttcagatgtgttgaaagtgagaaatatgtactagatttcaaagacataat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29281999 291 + 172585720 GCTATTTTCAGGCTATCTACCAAC-----------AACATGTTTTTTGCATATAATCTGTAGGATGAGCTCATTTAACACAGCATTCTTCTGAGAAATTAAACATTTAATTTTGAAGACATACATACTC---TGTCATACATACTCAATTTTGAAAACCTAAAAATATGTAAAGTATATGTTTAAATctgcacagtccaatatggttatcgttagccacaatgggtattgagtactgaaaactgcccagtccaacttaagatgtgttgaaagtgagaaatatgtaccagatttcaaagatgtaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28931680 291 - 170955103 GCTATTTTCAGGCTATCTACCAAC-----------AACATGTTTTTTGCATATAATCTGTAGGATGAGCTCATTTAACACAGCATTCTTCTGAGAAATTAAACATTTAATTTTGAAGACATACATACTC---TGTCATACATACTCAATTTTGAAAACCTAAAAATATGTAAAGTATatgtttaaatctgcacagtccaatatggttatcgttagccacaatgggtattgagtactgaaaactgcccagtccaacttaagatgtgttgaaagtgagaaatatgtaccagatttcaaagatgtaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1908159 291 -   2996164 GCTATTTTCAGGCTATCTACCAAC-----------AACATGTTTTTTGCATATAATCTGTAGGATGAGCTCATTTAACACAGCATTCTTCTGAGAAATTAAACATTTAATTTTGAAGACATACATACTC---TGTCATACATACTCAATTTTGAAAACCTAAAAATATGTAAAGTATATGTTTAAATctgcacagtccaatatggttatcgttagccacaatgggtattgagtactgaaaattgcccagtccaacttaagatgtgttgaaagtgagaaatatgtaccagatttcaaagatgtaat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1793395 291 -   2157725 GCTATTTTCAGGCTATCTACCAAC-----------AACATGTTTTTTGCATATAATCTGTAGGATGAGCTCATTTAATACAGCATTCTTCTGAGAAATTAAACATTTAATTTTGAAGACATACATACTC---TGTCATACATACTCAATTTTGAAAACCTAAAAATATGTAAAGTATATGTTTAAATctgcacagtccaatatggttatcgttagccacaatgggtattgagtactgaaaattgcccagtccaagttaagatgtgttgaaagtgagaaatacgtaccagatttcaaaTATGTAAt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28247643 291 -  71996105 GCTATTTTCAGGCTATCTACCAAC-----------AACATGTTTTTTGCATATAATCTGTAGGATGAGGTCATTTAACACAGCATTCTTCTGAGAAATTAAACATTTAATTTTGAAGACATACATACTC---TGTTATACATACTCAATTTTGAAAACCTAAAAGTATGTAAAGTATatgtttaaatctgcagtgtccaatatggttatcgttagccacaatgggtattgagtactgaaaattgtccagtccaagttaagatgtgttgaaagtgagaaatatgtaccagatttcaaagaTGTAAt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1916456 291 +   2316924 GCTATTTTCAGGCTATCTACCAAC-----------AACATGTTTTTTGCATATAATCTGTAGGATGAGCTCATTTAATACAGCATTCTTCTGAGAAATTAAACATTTAATTTTGAAGACATACATACTC---TGTCATACATACTCAATTTTGAAAACCTAAAAATATGTAAAGTATATGTTTAAATctgcacagtccaatatggttatcgttagccacaatgggtattgagtactgaaaattgcccagtccaagttaagatgtgttgaaagtgagaaatatgtaccagatttcaaaTATGTAAt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1790292 291 -   3067355 GCTATTTTCAGGCTATCTACCAAC-----------AACATGTTTTTTGCATATAATCTGTAGGATGAGCTCATTTAACACAGCATTCTTCTGAGAAATTAAACTTTTAATTTTGAAGACATACATACTC---TGTCATACATACTCAATTTTGAAAACCTAAAAATATGTAAAGTATatgtttaaatctgcactgtccaatatggttatcgttagccacaatgggtattgagtactgaaaattgcccagtccaagttcagatgtgttgaaagtgagaaatatgtaccagatttcaaagacgtaat
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            167889 303 -    375362 TCTACCTTGACACTGTCTACCAACAACATGATTGAAACACAATTTTTCTGTTTAATCTGTAGGATGAGCTCATTTAACACAGCATTCTTCTGAGGAATTAAAGATTTAATTTTGAAGACGGG-GCACCCTCATGTCATACTTACTCAATTTCAAAAACCCAAAAATATATAAAGTATCtgtttaaacctgcactgtccaatatggttaccattag-cacattggctattgaatgcttgaaatttcccagtccaagttaagatgtgttgtaagtgtgaaatatatagcagatttcaatgatgtaat
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      106070 303 -    285216 TCTATCTTGACACTATCTACCAACAACATGATTGAAACACATTTTTTCTGTATAATTTGTAGGATGAGCTCATTTAACACAGCATTCTTCTGAGGAATTAAAGATTTAATTTTGAAGACAGA-GCACCCTCATGTCATACATACTCAATTTCAAAAGCCTAAAAATATATAACGTATCtgtttaaacctgcactgtccagtatggttaccattag-cacattggctattgaatgcttgaaatttcccagtccaagttaagatgtgttgtaagtgtgaaatatatacgagatttcaatgatgtaat
i aotNan1.NW_018494050v1   C 0 I 1811
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1481605  30 -   2232465 I
e cebCap1.NW_016108108v1      142437 831 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=46244.000000
s hg38.chr6_GL000254v2_alt     84871 8 +   4827813 tttttttt
s panTro5.chr6              29055448 8 + 175400573 tttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29299502 8 + 173848474 tttttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5099559 8 +   6154872 tttttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74105395 8 + 122973662 tttgtttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29282290 8 + 172585720 tttctttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28931971 8 - 170955103 tttctttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1908450 8 -   2996164 tttctttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1793686 8 -   2157725 tttctttt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28247934 8 -  71996105 tttctttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1916747 8 +   2316924 tttctttt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1790583 8 -   3067355 tttctttt
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            168192 8 -    375362 attatttt
i saiBol1.JH378348         C 0 T 28360
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      142437 831 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=349385.000000
s hg38.chr6_GL000254v2_alt     84879 65 +   4827813 ----catggagtctcgctctgccacctaacctggagtgcagtggtgcaatcttggctcacagcaacctc
s panTro5.chr6              29055456 66 + 175400573 ---tcatggagtctcgctctgtcacctaacctggagtgcagtggtgcaatcttggctcacagcaacctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29299510 65 + 173848474 ----catggagtctcgctctgtcacctaacctggagtgcagtggtgcaatcttggctcacagcaacctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5099567 65 +   6154872 ---tcatggagtctcgctctgtcacctaacctggagtgcagtggtgcaa-cttggctcacagcaacctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74105403 65 + 122973662 ----catggagtctctctctgtcacctaggctggagtgcagtggtgcaatcttggctcactgcaacctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29282298 69 + 172585720 ttttcgtggagtctcgctttgtcacccagactggagcgcagtgggacaatcttggctcactgcaacctc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28931979 69 - 170955103 ttttcgtggagtctcgctttgtcacccagactggagcgcagtgggacaatcttggctcactgcaacctc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1908458 69 -   2996164 ttttcgtggagtctcgctttgtcacccagactggagcgcagtgggacaatcttggctcactgcaacctc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1793694 69 -   2157725 ttttcttggagtctcactttgtcacccagactggagcgcagtgggacaatcttggctcactgcaacctc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28247942 69 -  71996105 ttttcgtggagtctcgctttgtcacccagactggagcgcagtgggacaatcttggctcactgcaacctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1916755 69 +   2316924 ttttcttggagtctcactttgtcacccagactggagcgcagtgggacaatcttggctcactgcaacctc
i manLeu1.NW_012104165v1   C 0 M 205
s colAng1.NW_012115566v1     1790591 69 -   3067355 ttttcgtggagtctcgctttgtcacccagactggagcgcagtgggacaatcttggcttactgtaacctc
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            168200 28360 -    375362 T
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      142437 831 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=410572.000000
s hg38.chr6_GL000254v2_alt     84944 103 +   4827813 cacctgttgggttcaatccattctcctgcctcagcctcctgagtaactgggactacaggcgcgcaccaccatgcctggcaatttttctttttcttt-ttttttt-
s panTro5.chr6              29055522 104 + 175400573 cacctgtcaggttcaatccattctcctgcctcagcctcctgagtaactgggactacaggcgcgcgccaccatgcccggcagtttttctttttctttcttttttt-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29299575 102 + 173848474 cacctgtcgggttcaatccattctcctgcctcagcctcctgagtaactgggactacaggcgcgcgccaccatgcccggcaatttttctttttctt--tcttttt-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5099632  98 +   6154872 cacctgtcgggttccatccattctcctgcttcagcctcctgagtaactgggactacaggcgcgcgccaccatgcccggcaatttttttttt------ttttttt-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74105468 104 + 122973662 tgcctgctgggttcaagccattttcctgcctcagcctcctgagtagctgggactacaggcacgtgccaccatgcccggcaaatttttttttttttttttttttt-
i nomLeu3.chr1a            C 0 I 5
s rheMac8.chr4              29282367 103 + 172585720 tgcctgccgggttcgagccattctcctgcctcagcctcctgagtagctgggactacaggcatgtgccaccatgcccagctaattttttttttttt--ttttttta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28932048 103 - 170955103 tgcctgccgggttcgagccattctcctgcctcagcctcctgagtagctgggactacaggcatgtgccaccatgcccagctaattttttttttttt--ttttttta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1908527 100 -   2996164 tgcctgccgggttcgagccattctcctgcctcagcctcctgagtagctgggactacaggcatgtgccaccatgcccagctaa---tttttttttt--ttttttta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1793763 103 -   2157725 tgcctgccgggttcgagctgttctcctgcctcagcctcctgagtagctgggactacaggcgtgtgccaccatgcccggctaattttttttttttt--tttttgta
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28248011 103 -  71996105 tgcctgccgggttcaagccgttctcctgcctcagcctcctgagtagctgggactccaggcgggtgccaccatgcccagctaattttttttttttt--TTTTTTTT
i chlSab2.chr17            C 0 I 3373
s colAng1.NW_012115566v1     1790660 102 -   3067355 tgcctgccgggtccaagccgttctcctgcctcagcctcctgagtagctgggattacaggcgtgtgccaccatgcccggctaattttttttttttt--ttttgta-
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            168200 28360 -    375362 T
e otoGar3.GL873742           1481605  30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      142437 831 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e manLeu1.NW_012104165v1     1916824 205 +   2316924 M

a score=463505.000000
s hg38.chr6_GL000254v2_alt     85047 126 +   4827813 tttttagtagagacagggtttcaccatgctggccaggctggtcccaaactcctgaccttgtcatctgccctcctcggcctcccaaagtgctgggattacaggcatgggccgccgcacctggccaga
s panTro5.chr6              29055626 126 + 175400573 tttttagtagagacagggtttcaccatgctggccaggctggtcccaaactcctgaccttgtcatctgccctcctcggcctcccaaagtgctgggattacaggcatgggccgccgcccctggccaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29299677 126 + 173848474 tttttggtagagacagggtttcaccatgctggccaggctggtcccaaactcctgaccttgtcatctgccctcctcggcctcccaaagtgctgggattacaggcatgggccgccgcacctggccaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5099730 126 +   6154872 tttttagtagagacagggtttcaccatgctggccaggctggtcccaaactcctgaccttgtcatctgccctcctcggcctcccaaagtgctgggattacaggcatgggccgccgcacctggtcaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74105577 126 + 122973662 tttttagtagagatgaggtttcaccatgctggccaggctggtctcaaactcctgaccttgtcatctgcccttctcagcctcccaaagtgctgggattacaggcatgagccgccacacctggccaga
i nomLeu3.chr1a            I 5 C 0
s rheMac8.chr4              29282470 126 + 172585720 gtttaattagagatagggtttcaccgtgctggccaggctcgtctcaaactcctgaccacgtcatctgcccttctcggcctcccaaagtgctgggattacaggcaggagctgccgcgcctggccaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28932151 126 - 170955103 gtttaattagagatagggtttcaccgtgctggccaggctcgtctcaaactcctgaccacgtcatctgcccttctcggcctcccaaagtgctgggattacaggcaggagctgccgcgcctggccaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1908627 126 -   2996164 gtttaattagagatagggtttcaccgtgctggccaggctcgtctcaaactcctgaccacgtcatctgcccttgtcggcctcccaaagtgctgggattacaggcaggagctgccgcgcctggccaga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1793866 126 -   2157725 gttttagtagagatggggtttcaccgtgttggccaggctggtctcgatctcctgacctcgtgatccgcccgtctcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggccAGA
i cerAty1.NW_012001495v1   C 0 T 13678
s colAng1.NW_012115566v1     1790762 126 -   3067355 gttttagtagagatggggtttcaccgtgttggccaggctggtttcaaacttctgacctcatcatctgcccttctcggcctcccaaagtgctgggattacaggcaggagccgccgcacctggccaga
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            168200 28360 -    375362 T
e otoGar3.GL873742           1481605  30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      142437 831 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e manLeu1.NW_012104165v1     1916824 205 +   2316924 M
e chlSab2.chr17             28248114 3373 -  71996105 I

a score=318599.000000
s hg38.chr6_GL000254v2_alt     85173 98 +   4827813 tgtaatatcattttttaaacataaaatgtctcactgataattttaagattgattacttgttaaaataatattttggacatgcaaggtgatttacatat
s panTro5.chr6              29055752 98 + 175400573 tgtaatatcattttttaaacataaaatgtctcactgataattttaagattgattacttgttaaaataatattttggacatgcaaggtgatttacatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29299803 98 + 173848474 tgtaatatcattttttaaacataaaatgtctcactgataattttaagattgattacttgttaaaataatattttggacatgcaaggtgatttacatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5099856 98 +   6154872 tgtaatatcattttttaaacataaaatatctcactgataattttaagattgattacttgttaaaataatattttggacatgcaaggtgatttacatat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74105703 98 + 122973662 tgtaatatcattttttaaatataaaatatctcactgataattttaagattgattacttgttaaaacagtattttggacatgcaaggtgatttacatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29282596 98 + 172585720 tgtagtatcattttttaaacataaaatatctcactgataattttaagattgattacttgttaaaacaatattttggacatgcaaggtgatttacatat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28932277 98 - 170955103 tgtagtatcattttttaaacataaaatatctcactgataattttaagattgattacttgttaaaacaatattttggacatgcaaggtgatttacatat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1908753 98 -   2996164 tgtagtatcattttttaaacataaaatatctcactgataattttaagattgattacttgttaaaacaatattttggacatgcaaggtgatttacatat
i macNem1.NW_012011356v1   C 0 C 0
s colAng1.NW_012115566v1     1790888 98 -   3067355 tgtagtatcattttttaaacataaaatatctcactgataattttaagattgattacttgttaaaacaatattttggacatgcaaggtgatttacatat
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            168200 28360 -    375362 T
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      142437 831 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e manLeu1.NW_012104165v1     1916824 205 +   2316924 M
e chlSab2.chr17             28248114 3373 -  71996105 I
e cerAty1.NW_012001495v1     1793992 13678 -   2157725 T

a score=2110960.000000
s hg38.chr6_GL000254v2_alt     85271 552 +   4827813 attagtaaaactggacataaaagatggaaacaatagacactggggactactagagggggaggcgagaaggggaaaggcttgaaaagctaactattggatactatgttcaccacccaggtgatgggattaatctcaccccaaccccagcatcatgcactatacccatgtaacaaacctggacatgtaccccctgaatctaaaataaaagttgaaattattattat---tagtattattattttgagacagagtcttgctctgtctctcaggctagagtacagtggcgctatctgggctcactgcaaactcctcctccaggtttcaagtgattctcctatctcagactcccaagtagctgaaattacaggcatgcaccaccacacccagctaatttttgtatttttattagagacagggtttcaccatattggtcaggttggtcttgaacccctgacctcaggtgttccgcgcacctcggcctcccaaagggctgggattacaggtatgacccaccttgcctatctaaaagttgaaattgtt-aaaaaattatataaa
s panTro5.chr6              29055850 552 + 175400573 attagtaaaactggacataaaagatggaaacaatagacactggggactactagagggggaggcgagaaggggaaaggcttgaaaagctaactattggatactatgttcaccacccaggtgatgggattaatctcaccccaaccccagcatcatgcactatacccatgtaacaaacctggacatgtaccccctgaatctaaaataaaagttgaaattattattag---tagtattattattttgagacagagtcttgctctgtctctcaggctagagtgcagtggcactatctgggctcactgcaaactcctcctccaggtttcaagtgattctcctatctcagactcccaagtagctgaaattacaggcatgcaccaccacacccagctaatttttgtatttttattagagacagggtttcaccatattggtcaggttggtcttgaacccctgacctcaggtgatccgcccacctcggcctcccaaagggctgggattacaggtatgacccaccttgcctgTCTAAAAGTTGAAATTgtt-aaaaaattatataaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29299901 552 + 173848474 attagtaaaactggacataaaagatggaaacaatagacactggggactactagagggggaggcgagaaggggaaaggcttgaaaagctaactattggatactatgttcaccacccaggtgatgggattaatctcaccccaaccccagcatcatgcactatacccatgtaacaaacctggacatgtaccccctgaatctaaaataaaagttgaaattattattag---tagtattattattttgagacagagtcttgctctgtctctcaggctagagtgcagtggcgctatctgggctcactgcaaactcctcctccaggtttcaagtgattctcctatctcagactcccaagtagctgaaattacaggcatgcaccaccacacccagctaatttttgtatttttattagagacagggtttcaccatattggtcaggttggtcttgaacccctgacctcaggtgatccgcccacctcggcctcccaaagggctgggattacaggtatgacccaccttgcctgtctaaaagttgaaattgtt-aaaaaattatataaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5099954 550 +   6154872 attagtaaaactggacataaaagatggaaacaatagacactggggactactagagggggaggcgagaaggggaaaggcttgaaaagctaactattggatactatgctcaccacccaggtgatgggattaatctcaccccaaccccagcatcatgcactatacccatgtaacaaacctggacatgcaccccctgaatctaaaatgaaagttgaaattattattat---tattattat--ttttgagacggagtcttgctctgtctctcaggctagagtgcagtggcgctatctgggctcactgcaaactcctcctccaggtttcaagtgattctcctatctcagactcccaagtagctgaaattacaggcatgcaccaccacacccagctaatttttgtatttttattagaggcagggtttcaccatgttggtcaggttggtcttgaacccctgacctcaggtgatccgcccacctcggcctcccaaagggctgggattacaggtatgacccaccttgcctgtctaaaagttgaaattgtt-aaaaaattatataaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74105801 551 + 122973662 attagtaaaaCtggacataaaagatggaaacaatagacactgggcactactagagggggaggcgagaaggggaaaggcttgaaaagctagctgttggatactatgctcactacccgggtgatgggattaatcccaccccaaccccagcatcatgcaatatactcatgtaacaaacctggacatgta-cccctgaatctaaaataaaagttcaaattattattattactagtattattattttgagacagag----actctgtctctcaggctagagtgcagtggtgctgtctgggctcactacaaactcctcctccaggtttcaagtgattctcctatctcagactcccaagtagctgaaattacaggcgggcaccacaacacccagctaatttttgtatttttagtagagacaaggtttcaccatattggtcaggctggtctcgaacccctgacctcaggtgattcacccacctcggcctcccaaagcgccgggattacaggcatcacccacggtgcctggcTAAAAGTGGAAATTATCAAAAAAATGATATAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29282694 553 + 172585720 attagtaaaaCtggacataaaagatggaaacaatagacactggggactactagaggaggaggcaagaaggggaaagacttgaaaagctaactattggatactatgctgactacctgggtgatgggattaatcccaccccaaccccagcatcatgcaataaacccatgtaaaaaacctggacatgtaccccctgaatctaaaataaaacttgaaattattattattaatgttattattattttgagacagagtcttgctctg--tctcaggctagagtgcagtggcactatctgggctcactgcaaactcctcctccaggtttcaagtgattctcctatctcagactcccaagtagctaaaattacaagcgcgcgccaccacacccagctaatttttgtatttttagtagagacagggtttcaccatgttggtcaggctggtctcgaacccctgacctcaggtgatctgcccacctcggcctcccaaagcgctggaattacaggtatgacccattttgcctggcTAAAAGTTGAAATTATt-aaaaaatcatataaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28932375 553 - 170955103 attagtaaaactggacataaaagatggaaacaatagacactggggactactagaggaggaggcaagaaggggaaagacttgaaaagctaactattggatactatgctgactacctgggtgatgggattaatcccaccccaaccccagcatcatgcaatatacccatgtaaaaaacctggacatgtaccccctgaatctaaaataaaacttgaaattattattattaatgttattattattttgagacagagtcttgctctg--tctcaggctagagtgcagtggcactatctgggctcactgcaaactcctcctccaggtttcaagtgattctcctatctcagactcccaagtagctaaaattacaagcgcgcgccaccacacccagctaatttttgtatttttagtagagacagggtttcaccatgttggtcaggctggtctcgaacccctgacctcaggtgatctgcccacctcggcctcccaaagcgctggaattacaggtatgacccattttgcctggctaaaagttgaaattaTt-aaaaaatcatataaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1908851 553 -   2996164 attagtaaaaCtggacataaaagatggaaacaatagacactggggactactagaggaggaggcaagaaggggaaagacttgaaaagctaactattggatactatgctgactacctgggtgatgggattaatcccaccccaaccccagcatcatgcaatatacccatgtaaaaaacctggacatgtaccccctgaatctaaaataaaacttgaaattattattattaatgttattattattttgagacagagtcttgctctg--tctcaggctagagtgcagtggcgctatctgggctcactgcaaactcctcctccaggtttcaagtgattctcctatctcagactcccaagtagctaaaattacaagcgcgcgccaccacacccagctaatttttgtagttttagtagagacagggtttcaccatgttggtcaggctggtcttgaacccctgacctcaggtgatctgcccacctcggcctcccaaagcgctggaattacaggtatgacccatttcgcctggcTAAAAGTTGAAATTATt-aaaaaatcatataaa
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1917036 553 +   2316924 ATTAGTAAAACtggacataaaagatggaaacaatagacactggggactactagaggaggaggcaagaaggggaaagacttgaaaagctaactattggatactatgctgactatccgggtgatgggattaatcccaccccaaccccagcatcatgcaatatacccatgtaacaaacctggacatgtaccccctgagtctaaaataaaagttgaaattattattattaatgttattattattttgagacagagtcttgctctg--tctcaggctagagtgcagtggtgctatctgggctcactgtaaactcctcctccaggtttcaagtgattctcctatctcagactcccaagtagctgaaattacaagcgcgcgccaccacacccagctaatttttgtatttttagtagagacggggtttcaccatgttggtcaggctggtctcgaacccctgacctcagctgatctgcccacctcggcctcccaaagcgctggaattacaggtatgacccaTTTTCCATAGCTAAAAGTTGAAGTTAtt-aaaaaaagatataaa
i manLeu1.NW_012104165v1   M 205 C 0
s colAng1.NW_012115566v1     1790986 553 -   3067355 attagtaaaaCtggacataaaagatggaaacaatagacactggggactactagaggcagaggcgagaaggggaaagacttgaaaagctaactattggatactatgctgactacccaggtgatgggattaatcccaccccaaccacagcatcatgcaatatacccatgtaacaaacctggacatgtaccccctgaatctaaaataaaagttgaaattattattattagtgttattattattttgagacagagtcttgctctg--tctcaggctagagtgcagtggcgctatctgggctcactgcaaactgctcctccaggtttcaagtgattctcctatctcagactcccaagtagctgaaattacaagcgcgcgccaccacacccagctaatttttgtatttttagtggagacggggtttcaccatattggtcaggctggtctcgaacccctgatctcaggggttcggtccacctaggcctcccaaagcgctggaattacaggtatgacccactttgcctggcTAAAAGTTGAAATTATt-aaaaaatgatataaa
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            168200 28360 -    375362 T
e otoGar3.GL873742           1481605  30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      142437 831 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e chlSab2.chr17             28248114 3373 -  71996105 I
e cerAty1.NW_012001495v1     1793992 13678 -   2157725 T

a score=452793.000000
s hg38.chr6_GL000254v2_alt     85823 124 +   4827813 ataagtattgcctgtttattttttaaatgtgactactagaaaatttaaaactacagaagtggctctcatttaagatttgtattAACTTTTTTAAAAATTCTTTTTATCCCAGAAGCTAAAGCAG
s panTro5.chr6              29056402 124 + 175400573 ataagtattgcctgtttattttttaaatgtgactactagaaaatttaaaactacagaagtggctctcatttaagatttgtattAACTTTTTTAAAAATTCTTTTTATCCCAGAAGCTAAAGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29300453 124 + 173848474 ataagtattgcctgtttattttttaaatgtgactactagaaaatttaaaactacagaagtggctctcatttaagatttgtattAACTTTTTTAAAAATTCTTTTTATCCCAGAAGCTAAAGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5100504 124 +   6154872 ataagtattgcctgtttattttttaaatgtgactactagaaaatttaaaactacagaagtggctctcatttaagatttgtattACCTTTTTTAAAAATTCTTTTTATCCCAGAAGCTAAAGCCG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106352 124 + 122973662 ATAAACATTGtctgtttattttttaaatgtgactactagaaaatttaaaactacggaagtggctcttgtttaagatttgtattATCTTTTTAAAAAATTCTTTTTATCCCAGAAGGTAAAGTAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29283247 124 + 172585720 ataagtattgcctgtttattttttaaatgtgactactagaaaatttaaaactacagaagtggttctcatttaagatttgtattATGTTTTTAAAAAATTCTGTTTATCCAAGAAGCTAAAGTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28932928 124 - 170955103 ataagtattgcctgtttattttttaaatgtgactactagaaaatttaaaactacagaagtggttctcatttaagatttgtattATGTTTTTAAAAAATTCTGTTTATCCAAGAAGCTAAAGTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1909404 122 -   2996164 ataagtattgcctgtttattttttaaatgtgactactagaaaatttaaaactacagaagtggttctcatttaagatttgtattATGTTTTTAAAAAATTCTGTTTATCCGAGAAGCTAAAGT--
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1917589 102 +   2316924 ataagtattgcctgtttattttttaaatgtgactactagaaaatttaaaactacagaagtggctctcgtttaagatttgta----------------------ttATCCCAGAAGCTAAAGTAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1791539 124 -   3067355 ataagtattgcctgcttattttttaaatgtgactactagaaaatttaaaactactgaagtggctctcgtttatgatttgtattATGTTTTTAAAAAATTCTTTTTATCCCAGAAGCTAAAGTAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            139840  78 -    375362 ACAGATATTGACTG-----TTTTTTAATGTGTTTGCTGCCAAAGGTAACACTACA-AAATGGCTGTCATTTGTAACTTGTATTC----------------------------------------
i saiBol1.JH378348         T 28360 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1481605  30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      142437 831 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e chlSab2.chr17             28248114 3373 -  71996105 I
e cerAty1.NW_012001495v1     1793992 13678 -   2157725 T

a score=24805.000000
s hg38.chr6_GL000254v2_alt     85947 5 +   4827813 AAGAC
s panTro5.chr6              29056526 5 + 175400573 AAGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29300577 5 + 173848474 AAGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5100628 5 +   6154872 AAGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106476 5 + 122973662 AAGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29283371 5 + 172585720 AAGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28933052 5 - 170955103 AAGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1909526 4 -   2996164 -AGAC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28251487 5 -  71996105 AAGAC
i chlSab2.chr17            I 3373 C 0
s manLeu1.NW_012104165v1     1917691 5 +   2316924 AAGAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1791663 5 -   3067355 AAGAC
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            139918 0 -    375362 C
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      142437 831 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e cerAty1.NW_012001495v1     1793992 13678 -   2157725 T

a score=85830.000000
s hg38.chr6_GL000254v2_alt     85952 16 +   4827813 TTGTAGTATCTTTTGA
s panTro5.chr6              29056531 16 + 175400573 TTGTAGTATCTTTTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29300582 16 + 173848474 TTGTAGTATCTTTTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5100633 16 +   6154872 TTGTAGTATCTTTTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106481 16 + 122973662 TTGTGTTATCTTTTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29283376 16 + 172585720 TTGTATAATCTTTTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28933057 16 - 170955103 TTGTATAATCTTTTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1909530 16 -   2996164 TTGTATAATCTTTTGA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28251492 16 -  71996105 TTGTATAATCTTTTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1917696 16 +   2316924 TTGTATAATCTTTTGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1791668 16 -   3067355 TTGTATAATCTTTTGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            139918  8 -    375362 --------TCTTTTGA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      143268 16 -    373274 TTGTATTATATTTTGA
i cebCap1.NW_016108108v1   I 831 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e calJac3.chr4             171318829 9442 - 171630274 I
e cerAty1.NW_012001495v1     1793992 13678 -   2157725 T

a score=978034.000000
s hg38.chr6_GL000254v2_alt     85968 134 +   4827813 TTGGACAGCATTGTCTAGAGACGATGTTATCTATTTAGGTGCTGTTCTGGGAGAATCCCAGAGCCAAAGGACATGGAGCATGGTCTGCCAGTAATTAGGTTTCATGCCGCGAGTGGACTTGACT----------------AAATGCATTT
s panTro5.chr6              29056547 134 + 175400573 TTGGACAGCATTGTCTAGAGACGATGTTATCTATTTAGTTGCTGTTCTGGGAGAATCCCAGAGCCAAAGGACATGGAGCATGGTCTGCCAGTAATTAGGTTTCATGCCGCGAGTGGACTTGACT----------------AAATGCATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29300598 134 + 173848474 TTGGACAGCATTGTCTAGAGACGATGTTATCTATTTAGTTGCTGTTCTGGGAGAATCCCAGAGCCAAAGGACATGGAGCATGGTCTGCCAGTAATTAGGTTTCATGCCGCGAGTGGACTTGACT----------------AAATGCATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5100649 134 +   6154872 TTCGACAGCATTGTCTAGAGACGATGTTATCTATTTAGGTGCTGTTCTGGGAGAATCCCAGAGCCAAAGGACATGGAGCATGGTCTGCCAGTAATTAGGTTTCATGCCGCGAGTGGACTTGGCT----------------AAATGCATTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106497 134 + 122973662 TTGGACAGCATTGTCTAGAGACGATGTTATCTATTTAGATGCTGTTCTGGGAGAATCCCAGAGCCAAAGGACATGGAGCATGGTCTGCTAGTAATTAGGTTTCATGCCACGAGTGGACTTGACT----------------AAATGCATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29283392 134 + 172585720 TTGGACAGCATTGTCTAGAGACAATGTTATCTATTTAGGTGCTGTTCTGGGAGAATCCCAGAGCCAAAGGACATGGAACATGGCCTGCCAGTAATTAGGTTTCACACCACGAGTGGACTTGACT----------------AAATGCATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28933073 134 - 170955103 TTGGACAGCATTGTCTAGAGACAATGTTATCTATTTAGGTGCTGTTCTGGGAGAATCCCAGAGCCAAAGGACATGGAACATGGCCTGCCAGTAATTAGGTTTCACACCACGAGTGGACTTGACT----------------AAATGCATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1909546 134 -   2996164 TTGGACAGCATTGTCTAGAGACAATGTTATCTATTTAGGTGCTGTTCTGGGAGAATCCCAGAGCCAAAGGACATGGAACATGGCCTGCCAGTAATTAGGTTTCACACCACGAGTGGACTTGACT----------------AAATGCATTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1780314 134 -   2157725 TTGGACAGCATTGTCTAGAGATGATGTTATCTCTTTAAATGTGGTTCTGGGAGATTCCCAGAGCCAGAAAGCATGGAGCATGGTCTCTGAGTAATTAAGTTTCATGCTTCGAGTGTTCTCGACA----------------GAATGCATTT
i cerAty1.NW_012001495v1   T 13678 C 0
s chlSab2.chr17             28251508 134 -  71996105 TTGGACAGCATTGTCTAGAGACAATGTTATCTATTTAGGTGCTGTTCTGGGAGAATCCCAGAGCCAAAGGACATGGAACATGGCCTGCCAGTAATTAGGTTTCACACCATGAGTGGACTTGACT----------------AAATGCATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1917712 134 +   2316924 TTGGACAGCATTGTCTAGAGACAATGTTATCTATTTAGGTGCTGTTCTGGGAGAATCCCAGAGGCAGAGAACATGGAGCATGATCTGCCAGTAATTAAGTTTCATGCCGTGAGTGGACTTGACA----------------GAATGCATTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1791684 150 -   3067355 TTGGACAGCATTGTCTAGAGACAATGTTATCTATTTAGGTGCTGTTCTGGGAGAATCCCAGAGCCAAAGGACATGGAACATGGCCTGCCAGTAATTAGGTTTCACACCACGAGTGGACCTGACTCGTGGTGTGAGTCAAGAAATGCATTC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            139926 134 -    375362 TGGGACAGCTTTGTCTACAGAGGATGTTACCTATTCAGGTGCTGTTCTGGGAGAATCCCAGAGCCAGAGGACATGGAGCACGGTCTGCCAGTGATTAAGTTTCATGCCAGGAATGGACTTGACA----------------GAATGCGTTT
i saiBol1.JH378348         C 0 I 10
s cebCap1.NW_016108108v1      143284 134 -    373274 TGGGACAGCTTTGTCTACAGAGAATGTTATCTATTCAGGTGCTGTTCTGGGACAATCCCAGAGCCAGAGAACATGGAGTACAGTCTGCCAGTAATTAAGTTTCATGCCAGGAATGGACTTGACA----------------GAATGCGTTT
i cebCap1.NW_016108108v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1481605  30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=7800.000000
s hg38.chr6_GL000254v2_alt     86102 1 +   4827813 C
s panTro5.chr6              29056681 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29300732 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5100783 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106631 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29283526 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28933207 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1909680 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1780448 1 -   2157725 C
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28251642 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1917846 1 +   2316924 C
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1791834 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      143418 1 -    373274 C
i cebCap1.NW_016108108v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140060 10 -    375362 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=4664.000000
s hg38.chr6_GL000254v2_alt     86103 1 +   4827813 C
s panTro5.chr6              29056682 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29300733 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5100784 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106632 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29283527 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28933208 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1909681 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1780449 1 -   2157725 T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28251643 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1917847 1 +   2316924 T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1791835 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140060 10 -    375362 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143419 0 -    373274 C
e calJac3.chr4             171318829 9442 - 171630274 I

a score=53286.000000
s hg38.chr6_GL000254v2_alt     86104 8 +   4827813 ATGCATGA
s panTro5.chr6              29056683 8 + 175400573 ATGCATGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29300734 8 + 173848474 ATGCATGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5100785 8 +   6154872 ATGCATGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106633 8 + 122973662 ATGCATGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29283528 8 + 172585720 ATGCATGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28933209 8 - 170955103 ATGCATGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1909682 8 -   2996164 ATGCATGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1780450 8 -   2157725 ATGCATAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28251644 8 -  71996105 ATGCATGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1917848 8 +   2316924 ATTCATGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1791836 8 -   3067355 ATGCATGA
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      143419 8 -    373274 GTGCATGA
i cebCap1.NW_016108108v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140060 10 -    375362 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=982440.000000
s hg38.chr6_GL000254v2_alt     86112 135 +   4827813 TCTCCTTAGACCTTTGCAACATCCCATTTTACATAATCATTATTAGCCTCATTTTTAAGGTATTGAATGAGAGACGAATCATGCTTAGAATTA-CCCTAGGCGTTTCATTTCAACAAAATGTAAAGGAAT--------------CACTAC
s panTro5.chr6              29056691 135 + 175400573 TCTCCTTAGACGTTTGCAACATCCCATTTTACATAATCATTATTAGCCTCATTTTTAAGGTATTGAATGAGAGACGAATCATGCTTAGAATTA-CCCTAGGCGTTTCATTTCAACAAAATGTAAAGGAAT--------------CACTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29300742 135 + 173848474 TCTCCTTAGACGTTTGCAACATCCCATTTTACATAATCATTATTAGCCTCATTTTTAAGGTATTGAATGAGAGACGAATCATGCTTAGAATTA-CCCTAGGCGTTTCATTTCAACAAAATGTAAAGGAAT--------------CACTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5100793 135 +   6154872 TCTCCTTAGACCTTTGCAACATCCCATTTTACATAATCATTATTAGCCTCATTTTTAAGGTATTGAATGAGAGACGAATCATGCTTAGAATTA-CCCTAGGCGTTTCATTTCAACAAAATGTAAAGGAAT--------------CACTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106641 150 + 122973662 TCTCCTTAGACCTTTACAACATCCCAGTTTACATAATCATTATTAGCCTCATTTTTAAGGTTTTGAATAAGAGACAAATCATGCTTAGAATTACCCCTAGGCCTTTCATTTCAGCAAAATGTAAAGAAATCATTACTGTGCTAGCATTAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29283536 135 + 172585720 TCTCCTTAGACCTTTACAACATCCCATTTTACATAATCATTATTAGCCTCATTTTTAAGGTATTGAATGAGAGACAAATCATGCTTAGAATTA-CCCTAGGCCTTCGATTTCAACAAAATGTAAAGGAAT--------------CATTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28933217 135 - 170955103 TCTCCTTAGACCTTTACAACATCCCATTTTACATAATCATTATTAGCCTCATTTTTAAGGTATTGAATGAGAGACAAATCATGCTTAGAATTA-CCCTAGGCCTTCGATTTCAACAAAATGTAAAGGAAT--------------CATTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1909690 135 -   2996164 TCTCCTTAGACCTTTACAACATCCCATTTTACATAATCATTATTAGCCTCATTTTTAAGGTATTGAATGAGAGACAAATCATGCTTAGAATTA-CCCTAGGCCTTCGATTTCAACAAAATGTAAAGGAAT--------------CATTAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1780458 135 -   2157725 TCTCCTTAGACCTTTACAACATCCCATTTTATGTAATTATTATTAGCCGCATTTTTAAGCGATTGAATAGGAGAAAAATCGTGCTGGGAATTA-CCCTAGAACTTCCATTTCAACAGAATGTAAAGGAAT--------------CATTAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28251652 135 -  71996105 TCTCCTTAGACCTTTACAACATCCCATTTTACATAATCATTATTAGCCTCATTTTTAAGTTATTGAATGAGAGACAAATCATGCTTAGAATTA-CCCTAGGCCTTCGATTTCAACAAAATGTAAAGGAAT--------------CATTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1917856 135 +   2316924 TATCCTTTGATCTTTACAACATCCCATTTTACATAATCATTATTAGCCTCATTTTTAAGGTATTGAATGAGAGACAAATCATGCTTAGAATTA-CCCTAGGCCTTCAATTTCAACAAAATGTAAAGGAAT--------------CATTAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1791844 135 -   3067355 TCTCCTTAGACCTTTACAACATCCCATTTTACATAATCATTATTAGCCTTATTTTTAAGGTATTGAATGAGAGACAAATCATGCTTAGAATTA-CCCTAGGCCTTCGATTTCAACAAAATGTAAAGGAAT--------------CATTAC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            140070 135 -    375362 TCTCCTTTGATCTTAACAACATCCCATTTTACAAAATCATTATTAATCTCACTTTGAAGCCATTGAATGGGAGACAAATCATGCTTGGAATTA-CCCTGGGCCTTCCATTTCAACAGAAGGGAAAGAAAT--------------CATTAC
i saiBol1.JH378348         I 10 I 39
s cebCap1.NW_016108108v1      143427 135 -    373274 TCTCCTTTGATCTTTACAATATCCCATTTTACAAAATCATTATTAGCCTCACTTTGAAGCCATTGAATGGGAGACAAATCATGCTTGGAATTA-CCCTAGGCCTTCCATTTCAACAGAAGGTAAAGAAAT--------------CATTAC
i cebCap1.NW_016108108v1   C 0 I 39
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1481605  30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=185434.000000
s hg38.chr6_GL000254v2_alt     86247 40 +   4827813 TGTGCTAGGCAAGAAAACATTCAATCCTGCCATTTGTCTA
s panTro5.chr6              29056826 40 + 175400573 TGTGCTAGGCAAGAAAACATTCAATGCTGCCATTTGTCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29300877 40 + 173848474 TGTGCTAGGCAAGAAAACATTCAATGCTGCCATTTGTCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5100928 40 +   6154872 TGTGCTAGGCAAGAAAACATTCAATGCTGCCATTTGTCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106791 30 + 122973662 TGTGCTAGGCAAGAAAACATTCAATGCTGC----------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29283671 40 + 172585720 TGTGCTAGGCAAGAAAACATTTAATGCTGTCATTTTTGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28933352 40 - 170955103 TGTGCTAGGCAAGAAAACATTTAATGCTGTCATTTTTGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1909825 33 -   2996164 TGTGCTAGGCAAGAAAACATTTAATGCTGTCAT-------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1780593 40 -   2157725 TGTGTTAGGCAAGAAAACATTCAGTGCTACCATTTGTCTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28251787 40 -  71996105 TGTGCTAGGAGGGAAAACATTTAATGCTATCATTTGTGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1917991 40 +   2316924 TGTGCTAGTCAAGAAAACATTTAATGCTGTCATTTGTGTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1791979 40 -   3067355 TGTGCTAGGCAAGAAAACATTTAATGCTGCCATTTGTGTA
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140205 39 -    375362 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143562 39 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=77917.000000
s hg38.chr6_GL000254v2_alt     86287 31 +   4827813 ATCAAATGtttccttttttttttctttt-----ttt
s panTro5.chr6              29056866 36 + 175400573 ATCAAATGtttcctttttttttttttttctttgttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29300917 35 + 173848474 ATCAAATGtttccttttatttttttttc-tttgttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5100968 32 +   6154872 ATCAAATAtttccttttttttttttctt-t---ttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106821 14 + 122973662 -----------------Gtttttttttt-----ttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29283711 31 + 172585720 ATCAAATAtttccttttttttttttttt-----ttt
i rheMac8.chr4             C 0 I 2
s macFas5.chr4              28933392 31 - 170955103 ATCAAATAtttcctttttcttttttttt-----ttt
i macFas5.chr4             C 0 I 4
s macNem1.NW_012011356v1     1909858 30 -   2996164 -TCAAATATTTCCttttttttttttttt-----ttt
i macNem1.NW_012011356v1   C 0 T 14976
s chlSab2.chr17             28251827 24 -  71996105 ATCAAATAtttcc-------tttttttt-----taa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1918031 31 +   2316924 ATCAAATAtttccttttttttttttttt-----taa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1792019 27 -   3067355 ATCAAATAtttccttttttttttttta---------
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140205 39 -    375362 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143562 39 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e cerAty1.NW_012001495v1     1780633  0 -   2157725 C

a score=1111220.000000
s hg38.chr6_GL000254v2_alt     86318 320 +   4827813 aagacagagtcttgctcttgttgcctagggtggagtgcaatgttgcgatcttggctcactgcaacctccgcttcccgggttcaagggattctcctgcctcagcctctcgagtagctgggattacaggcatccaccaccacacccagctaat---ttattattattattattattatt------gttattattattattttgtatttttagtagtgacagggtatcaccatgttggccaggcaggtcttaaacttctgatctcaggtgatctacccgcctcagcctcccaaagtgctgagattacaggcgtga-gccaccacgcccagccT
s panTro5.chr6              29056902 317 + 175400573 aagacagagtcttgctcttgttgcctagggtggagtgcaatgttgcgatctcggctcactgcaacctccgcttcccgggttcaagggattctcctgcctcagcctctcgagtagctgggatcacaggcatccaccaccacacccagctaat---ttattattattattattattatt---------attattattattttgtatttttagtagtgacagggtatcaccatgttggccaggcaggtcttaaacttctgatctcaggtgatctacccgcctcggcctcccaaagtgctgagattacagacgtga-gccaccacgcccagccT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29300952 326 + 173848474 aagacagagtcttgctcttgttgcctagggtggagtgcaatgttgcgatctcggctcactgcaacctccgcttcccgggttcaagggattctcctgcctcagcctctcgagtagctgggattacaggcatccaccaccacacccagctaat---ttattattattattattattattattattattattattattattttgtattttcagtagtgacagggtatcaccatgttggccaggcaggtcttaaacttctgatctcaggtgatctacccgcctcggcctcccaaagtgctgagattacagacgtga-gccaccacgcccagccT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5101000 305 +   6154872 aagacagaatcttgctcttgttgcctagggtggagtgcaatgttgcgatctcggctcactgcaacctccgcttccagggttcaagggattctcctgcctcagcctctcgagtagctgggattacaggcatccaccaccacacccagctaat---ttattattattattattattatt---------------------ttgtatttttagtagtgacagtgtatcaccatgttggccaggcaggtcttaaacttctgatctcaggtgatctacccgcctcggcctcccaaagtgctgagattacaggcgtga-gccaccacgcccagccT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74106835 302 + 122973662 tagacagagtcttgctcttattgcctagggtggagtgcaatggtgcgatctcagctcactgcaacctctgcttcccgggttcaagggattttcctgcctcagcctccctagtagctgggtttacaggcatccaccaccactcccggctaat---ttattattattattattatt------------------------ttgtatttttagtagcgacagggtatcaccttgctggccaggctggtcttaaacttctgatctcaggtgatctacccgcctcatcctccc-aagtgctgatattactggcCGGAGGGGGGCGGGCACAGCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29283744 302 + 172585720 atgacagagtcttgctcttgttgcttagggtggagtgcaatggtgtgatctaggctcactgcaacctctgcctcccgggttcaagggattctcctgcttcagcctcctgagtagttgggattacaggcatccaccaccacgcccggctaat------ttgttattattattattatt---------------------ttgtatttttagtaatgacagggtatcactatgttggctaggctggtcttaaacttctgatctcaggtgatctacctgccttggcctcccaaagtgctgggattgcaggagtga-gccaccacgcccagccT
i rheMac8.chr4             I 2 C 0
s macFas5.chr4              28933427 302 - 170955103 atgacagagtcttgctcttgttgcctagggtggagtgcaatggtgtgatctaggctcactgcaacctctgcctcccgggttcaagggattctcctgcttcagcctcctgagtagttgggattacaggcatccaccaccacgcccggctaat------ttgttattattattattatt---------------------ttgtatttttagtaatgacagggtatcactatgttggctaggctggtcttaaacttctgatctcaggtgatctacctgccttggcctcccaaagtgctgggattgcaggagtga-gccaccacgcccagccT
i macFas5.chr4             I 4 C 0
s chlSab2.chr17             28251851 308 -  71996105 attacagagtcttgctcttgttgcctagggtggggtgcaatggtgcgatctaggctcactgcaacctctgcctcccgggttcaagggactctcctgcttcagcctcctgagtagctgggattacaggcatccaccaccacacccagctaatttattattattattattattattatt---------------------ttgtatttttagtaatgacagggtatcaccatgttggctaggctggtcttaaacttctgatctcaggtgatctacctgccttggcctcccaaagtgctgggattgcaggagtga-gccaccacgcccggccT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1918062 305 +   2316924 atgacagagtcttgctcttgttgcctagggtggagtgcaatggtgcgatctaggctcactgtaacctctgcctcccgggttcaagggattctcctgcttcagcctcctgagtagctgggattacaggcatccactaccacgcccggctaat---ttattattattattattattatt---------------------ttgtacttttagtaatgacagggtatcaccatgttggctaggctggtcttaaacttctgatctcaggtgatctacctgccttggcctcccaaagtgctgggattgcaggagtga-gccaccacgcccagccT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1792046 302 -   3067355 atgacagagtcttgctcttgttgcctagggtggagtgcaatggtgcgatctaggctcactgcaacctctgcctcccgggttcaagggattcttctgcttcagcctcctgagtaggtgggattacaggcatccaccaccaagtctggctaat------ttattatcattattattatt---------------------ttgtatttttagtaacgacagggtatcaccatgttggccagcctggtcttaaacttctgatctcaggtaatctacctgccttggcctcccaaagtgctgggattgcagaagtga-gccaccatgcccagccT
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140205  39 -    375362 I
e otoGar3.GL873742           1481605  30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143562  39 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e cerAty1.NW_012001495v1     1780633   0 -   2157725 C
e macNem1.NW_012011356v1     1909888 14976 -   2996164 T

a score=5005.000000
s hg38.chr6_GL000254v2_alt     86638 1 +   4827813 A
s panTro5.chr6              29057219 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29301278 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5101305 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107137 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29284046 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28933729 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1780633 1 -   2157725 A
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28252159 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1918367 1 +   2316924 A
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1792348 1 -   3067355 A
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140205 39 -    375362 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143562 39 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e macNem1.NW_012011356v1     1909888 14976 -   2996164 T

a score=7098.000000
s hg38.chr6_GL000254v2_alt     86639 1 +   4827813 T
s panTro5.chr6              29057220 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29301279 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5101306 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107138 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29284047 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28933730 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1780634 1 -   2157725 T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28252160 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1918368 1 +   2316924 T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1792349 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            140244 1 -    375362 T
i saiBol1.JH378348         I 39 C 0
s cebCap1.NW_016108108v1      143601 1 -    373274 T
i cebCap1.NW_016108108v1   I 39 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e calJac3.chr4             171318829 9442 - 171630274 I
e macNem1.NW_012011356v1     1909888 14976 -   2996164 T

a score=686512.000000
s hg38.chr6_GL000254v2_alt     86640 93 +   4827813 CAAATATTTCTTAA-TGAAAT-AAAACACAGGCTTCTGAGTTGAGAAAGCCTCAGTGACTTAAAGGGTAAAGTATCTGATTCCTAGTTCCTGTAC
s panTro5.chr6              29057221 93 + 175400573 CAAATATTTCTTAA-TGAAAT-AAAACACAGGCTTCTGAGTTGAGAAAGCCTCAGTGACTTAAAGGGTAAAGTATCTGATTCCTAGTTCCTGTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29301280 93 + 173848474 CAAATATTTCTTAA-TGAAAT-AAAACACAGGCTTCTGAGTTGAGAAAGCCTCAGTGACTTAAAGGGTAAAGTATCTGATTCCTAGTTCCTGTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5101307 93 +   6154872 CAAATATTTCTTAA-TGAAAT-AAAACACAGGCTTCTGAGTTGAGAAAGCCTCAGTGACTTAAAGGGTAATGTGTCTGATTCCTAGTTCTTGTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107139 95 + 122973662 CAAATATTTCTTAATTGAAATAAAAACACAAGCTTCTGAGTTGAGAAAGCCTCAGTGACTTAGAGGATAAAGTATCTGATTCCTAGTTCCTGTAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29284048 93 + 172585720 CAAACATTTCTTAC-TGAAAT-AAAACACAAGCTTCTGAGTTGAGAAAGCGTCAGTGACTTAAAGGATAAAGTATCTGATTCCTAGTTCCTGTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28933731 93 - 170955103 CAAATATTTCTTAC-TGAAAT-AAAACACAAGCTTCTGAGTTGAGAAAGCGTCAGTGACTTAAAGGATAAAGTATCTGATTCCTAGTTCCTGTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1894912 93 -   2996164 CAAATATTTCGTAA-CGAAAT-AAAACACAAGCTTCTGAGTTGAGAAGGCCTCAGTTACCTAAAGGATAAAGTATCTGATTCCCAGTTTCTGTGC
i macNem1.NW_012011356v1   T 14976 C 0
s cerAty1.NW_012001495v1     1780635 93 -   2157725 CAAATATTTCTTAA-CGGAAT-AAAACACAAGCTTCTGAGTTGAGAAAGCCTCAGTTACCTAAAGGATAAAGTATCTGATTCCCAGTTTCTGTAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28252161 93 -  71996105 CAAATATTTCTTAC-TGAAAT-AAAACACAAGCTTCTGAGTTGAGAAAGCATCAGTGACTTAAAGGATAAAGTATCTGATTCCTAGTTCCTGTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1918369 93 +   2316924 CAAATATTTCTTAA-TGAAAT-AAAACACAAGCTTCTGAGTTGAGAAAGCGTCAGTGACTTAAAGGATAAAGTATCTGATTCCTAGTTCCTGTAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1792350 93 -   3067355 CAAATATTTCTTAC-TGAAAT-AAAACACAAGCTTCTGAGTTGAGAAAGCGTCAATGACTTAAAGGATAAAGTATGTGATTCCTAGTTCCTGTAC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            140245 93 -    375362 CAAATATTCCTTAA-TAAAAT-ACAACACAAGCTTCTGAGTTGAGAAAGCCTCGGTGACCTAAAGGCTAAGGTATCGGATTCCCAGTTTCCGTAC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      143602 93 -    373274 CAAATATTCCTTAA-TGAAAT-AAAGCACAAGCTTCTGAGTTGAGAAAGCCTCGGTGACCTAAAGGATAAGGTATCCTATTCCCAGTTTCTGTAC
i cebCap1.NW_016108108v1   C 0 I 19878
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=165120.000000
s hg38.chr6_GL000254v2_alt     86733 25 +   4827813 AGTCAATGTCCCCACCCTGAGGTTG
s panTro5.chr6              29057314 25 + 175400573 AGTCAATGTCCCCACCCTGAGGTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29301373 25 + 173848474 AGTCAATGTCCCCACCCTGAGGTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5101400 25 +   6154872 AGTCAATGTCCCCACCCTGAGGTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107234 25 + 122973662 AGTCAATGTCCCCACCCTGAGGTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29284141 25 + 172585720 AGTCAGTGTCCCCACCCTGAGGTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28933824 25 - 170955103 AGTCAGTGTCCCCACCCTGAGGTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895005 25 -   2996164 AGTCAATGTTCCCACCTTGAGGTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1780728 25 -   2157725 AGTCAATGTTCCCACCTTGAGGTTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28252254 25 -  71996105 AGTCAGTGTCCCCACCCTGAGGTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1918462 25 +   2316924 AGTCAGTGTCCCCACCCTGAGGTTG
i manLeu1.NW_012104165v1   C 0 T 62593
s colAng1.NW_012115566v1     1792443 25 -   3067355 AGTCAGTGTCCCCACCTTGAGGTTG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            140338 25 -    375362 GGTCCATGTACCTACGCTGAGGTTG
i saiBol1.JH378348         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=-800.000000
s hg38.chr6_GL000254v2_alt     86758 1 +   4827813 G
s panTro5.chr6              29057339 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29301398 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5101425 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107259 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29284166 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28933849 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895030 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1780753 1 -   2157725 C
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28252279 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1792468 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140363 0 -    375362 C
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e manLeu1.NW_012104165v1     1918487 62593 +   2316924 T

a score=4664.000000
s hg38.chr6_GL000254v2_alt     86759 1 +   4827813 T
s panTro5.chr6              29057340 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29301399 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5101426 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107260 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29284167 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28933850 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895031 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1780754 1 -   2157725 T
i cerAty1.NW_012001495v1   C 0 T 39664
s chlSab2.chr17             28252280 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1792469 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            140363 1 -    375362 C
i saiBol1.JH378348         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e manLeu1.NW_012104165v1     1918487 62593 +   2316924 T

a score=476.000000
s hg38.chr6_GL000254v2_alt     86760 1 +   4827813 C
s panTro5.chr6              29057341 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29301400 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5101427 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s saiBol1.JH378348            140364 1 -    375362 T
i saiBol1.JH378348         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e colAng1.NW_012115566v1     1792470 0 -   3067355 C
e manLeu1.NW_012104165v1     1918487 62593 +   2316924 T
e chlSab2.chr17             28252281 0 -  71996105 C
e cerAty1.NW_012001495v1     1780755 39664 -   2157725 T
e macNem1.NW_012011356v1     1895032 0 -   2996164 C
e macFas5.chr4              28933851 0 - 170955103 C
e rheMac8.chr4              29284168 0 + 172585720 C
e nomLeu3.chr1a             74107261 0 + 122973662 C

a score=323413.000000
s hg38.chr6_GL000254v2_alt     86761 51 +   4827813 TCTCATTTGGTACCAATTTTCCTTTCACAATTTGATGCAGTTCTGATGTTG
s panTro5.chr6              29057342 51 + 175400573 TCTCATTTGGTATCAATTTTCCTTTCACAATTTGATGCAGTTCTGATGTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29301401 51 + 173848474 TCTCATTTGGTATCAATTTTCCTTTCACAATTTGATGCAGTTCTGATGTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5101428 51 +   6154872 TCTCATTTGGTACCAATTTTCCTTTCACAATTTGATGCAGTTCTGATGTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107261 51 + 122973662 TCTCATTTGGTACCAATTTTCCTTTCACAGTTGGATGCAGTTCTGATGTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29284168 51 + 172585720 TCTTATTTGGTACCAATTTTCCTTTCACAATTTGCTGCAGTTCTGATGTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28933851 51 - 170955103 TCTTATTTGGTACCAATTTTCCTTTCACAATTTGCTGCAGTTCTGATGTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895032 51 -   2996164 TCTCATTTGGTACTAATTTTCCTTTTTCAACTTGCTGCAGTTCTGATGTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1741091 51 -   2157725 TCTCATTTGGTACTAATTTTCCTTTTGCAACTTGCTGCAGTTGTAATGGTG
i cerAty1.NW_012001495v1   T 39664 C 0
s chlSab2.chr17             28252281 51 -  71996105 TCTTATTTGGTACCAATTTTCCTTTCACAATTTGCTGCAGTTCTGATGTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1855894 51 +   2316924 TCTCATTTGGTACTAATTTTCCTTTTGCAACTTGCTGCAGTTGTAATGGTG
i manLeu1.NW_012104165v1   T 62593 C 0
s colAng1.NW_012115566v1     1792470 51 -   3067355 TCTTATTTGGTACCAATTTTCCTTTCACAATTTGCTGCAGTTCTGATGTTG
i colAng1.NW_012115566v1   C 0 I 129
s saiBol1.JH378348            140365 51 -    375362 TCTCATTTGGTACCAATTTTCCTTTTGCAACTTGATGCAGTTCTGATGTTG
i saiBol1.JH378348         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=1925.000000
s hg38.chr6_GL000254v2_alt     86812 1 +   4827813 G
s panTro5.chr6              29057393 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29301452 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5101479 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107312 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29284219 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28933902 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895083 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1741142 1 -   2157725 G
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28252332 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1855945 1 +   2316924 G
i manLeu1.NW_012104165v1   C 0 C 0
s saiBol1.JH378348            140416 1 -    375362 G
i saiBol1.JH378348         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e colAng1.NW_012115566v1     1792521 129 -   3067355 I

a score=521881.000000
s hg38.chr6_GL000254v2_alt     86813 89 +   4827813 AGTACTGTAGTTT-ATTGTCTCCTCACACAGTATGCAGGTGTTAGGGGAAAATAACACTGAAAATGAAACACCAATTTGAAAGAAGAAAA
s panTro5.chr6              29057394 89 + 175400573 AGTACTGTAGTTT-ATTGTCTCCTCACACAGTATGCAGGTGTTAGGGGAAAATAACACTGAAAATGAAACACCAATTTGAAAGAAGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29301453 89 + 173848474 AGTACTGTAGTTT-ATTGTCTCCTCATACAGTATGCAGGTGTTAGGGGAAAATAACACTGAAAATGAAACACCAATTTGAAAGAAGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5101480 89 +   6154872 AGTACTGTAGTTT-ATTGTCTCCTCACACAGTATGCAGGTGTTAGGGGAAAATAACACTGAAAATGAAACACCAATTTGAAAGAAGAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107313 89 + 122973662 AGTACTGTACATT-ATTGTCTCCTCACAAAGTATGCATGAGTTAGGTGAAAATAATACTGAAAATGATACCCCAATTTGAAAGACGAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29284220 90 + 172585720 AGTACTGTAGATTAATTGTCTCCTCACACAGTATGCAGGAGTAAGAGGAAAATAACACTGAAAATGAAACACCAATTTGaaagaaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28933903 89 - 170955103 AGTACTGTAGATT-ATTGTCTCCTCACACAGTATGCAGGAGTAAGAGGAAAATAACACTGAAAATGAAACACCAATTTGaaagaaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895084 89 -   2996164 AGTACTGTAGATT-ATTGTCTCCTCACACAGTATGCAGGAGTAAGGGGGAAATAGCTCTGAAATTGAAACAGCAATTTGAAAGAAAAAAA
i macNem1.NW_012011356v1   C 0 I 18306
s cerAty1.NW_012001495v1     1741143 89 -   2157725 AGAACTGTAGATT-ATTGTATCCTCACAGGGTATGCAGAAGTTAGGGAAAAATAACACTGAAACTGAAGCAGTAATTTGaaagaaaaaaa
i cerAty1.NW_012001495v1   C 0 I 53278
s chlSab2.chr17             28252333 89 -  71996105 AGTACTATAGATT-ATTGTCTCCTCACACAGCATGCAGGAGTAAGAGGAAAATAACACTGAAAATGAAACACCAATTTGAAAGAAGAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1855946 89 +   2316924 AGAACTATAGATT-ATTGTATCCTCACAGGGTATGCAGAAGTTAGGGAAAAATAACACTGAAACTGAAGCAGTAATTTGaaagaaaaaaa
i manLeu1.NW_012104165v1   C 0 I 64708
s colAng1.NW_012115566v1     1792650 89 -   3067355 AGTACTGTAGATT-ATTGTCTCCTCACACAGTATGCAGGAGTAAGAGGAAAATAACACTGAAAATGAAACACAAATTTGAAAGAAGAAAA
i colAng1.NW_012115566v1   I 129 C 0
s saiBol1.JH378348            140417 89 -    375362 AGTCCTGTAGATT-ATCGTCTCCTCACAGGGTGTGCAGAAGTTAGGGAAAAACAATACTGAAACTGAAGCAGCAATTTGAAAGGAAAAAA
i saiBol1.JH378348         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=5612.000000
s hg38.chr6_GL000254v2_alt     86902 2 +   4827813 GA
s panTro5.chr6              29057483 2 + 175400573 GA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29301542 2 + 173848474 GA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5101569 2 +   6154872 GA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107402 2 + 122973662 TA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29284310 2 + 172585720 ga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28933992 2 - 170955103 ga
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28252422 2 -  71996105 GA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1792739 2 -   3067355 GA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            140506 2 -    375362 AA
i saiBol1.JH378348         C 0 I 217
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e manLeu1.NW_012104165v1     1856035 64708 +   2316924 I
e cerAty1.NW_012001495v1     1741232 53278 -   2157725 I
e macNem1.NW_012011356v1     1895173 18306 -   2996164 I

a score=13104.000000
s hg38.chr6_GL000254v2_alt     86904 4 +   4827813 TATT
s panTro5.chr6              29057485 4 + 175400573 TATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29301544 4 + 173848474 TATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5101571 4 +   6154872 TATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107404 4 + 122973662 TATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29284312 4 + 172585720 tatt
i rheMac8.chr4             C 0 T 97934
s macFas5.chr4              28933994 4 - 170955103 tatt
i macFas5.chr4             C 0 I 1
s chlSab2.chr17             28252424 4 -  71996105 TATT
i chlSab2.chr17            C 0 I 1
s colAng1.NW_012115566v1     1792741 4 -   3067355 TATT
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140508 217 -    375362 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e manLeu1.NW_012104165v1     1856035 64708 +   2316924 I
e cerAty1.NW_012001495v1     1741232 53278 -   2157725 I
e macNem1.NW_012011356v1     1895173 18306 -   2996164 I

a score=-432.000000
s hg38.chr6_GL000254v2_alt     86908 4 +   4827813 AAAA-
s panTro5.chr6              29057489 4 + 175400573 AAAA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29301548 4 + 173848474 TAAA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5101575 4 +   6154872 AAAA-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107408 4 + 122973662 CAAA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29186382 3 + 172585720 --aaa
i rheMac8.chr4             T 97934 I 1
s macFas5.chr4              28933999 3 - 170955103 --aaa
i macFas5.chr4             I 1 I 486
s chlSab2.chr17             28252429 2 -  71996105 --AA-
i chlSab2.chr17            I 1 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140508 217 -    375362 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e colAng1.NW_012115566v1     1792745 0 -   3067355 C
e manLeu1.NW_012104165v1     1856035 64708 +   2316924 I
e cerAty1.NW_012001495v1     1741232 53278 -   2157725 I
e macNem1.NW_012011356v1     1895173 18306 -   2996164 I

a score=1726.000000
s hg38.chr6_GL000254v2_alt     86912 6 +   4827813 ATGACC
s panTro5.chr6              29057493 6 + 175400573 ATGACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29301552 6 + 173848474 ATGACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5101579 6 +   6154872 ATGACC
i gorGor5.CYUI01015250v1   C 0 I 5
s nomLeu3.chr1a             74107412 6 + 122973662 ATGACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29186386 3 + 172585720 atc---
i rheMac8.chr4             I 1 C 0
s chlSab2.chr17             28252431 3 -  71996105 ATG---
i chlSab2.chr17            C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140508 217 -    375362 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e colAng1.NW_012115566v1     1792745 0 -   3067355 C
e manLeu1.NW_012104165v1     1856035 64708 +   2316924 I
e cerAty1.NW_012001495v1     1741232 53278 -   2157725 I
e macNem1.NW_012011356v1     1895173 18306 -   2996164 I
e macFas5.chr4              28934002 486 - 170955103 I

a score=261868.000000
s hg38.chr6_GL000254v2_alt     86918 119 +   4827813 -----AAAAAAAATCAGACAAAAAAAAAA-AAAAACAGGACAAAAAAGGCCCATTATCCCAACACAAAATTTCAAGAGAGGAGTTGAAGT-AAAAAAAAGGAAAATGGGGCACATCCACCTGAGTC
s panTro5.chr6              29057499 114 + 175400573 -----AAAAAAAATCAGACAAAAAAAAAA------CAGGACAAAAAAGGCCCATTATCCCAACACAAAATTTCAAGAGAGGAGTTGAAGT-AAAAAAAAGGAAAATGGGGCACATCCACCTGAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29301558 111 + 173848474 -----AAAAAAAATCAGACAAAAAAAA--------CAGGAC-AAAAAGGCCCATTATCCCAACACAAAATTTCAAGAGAGGAGTTGAAGT-AAAAAAAAGGAAAATGGGGCACATCCACCTGAGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5101590 121 +   6154872 -----AAAAAAAAACAGACAAAAAAAAAAAAAAAACAGGACAAAAAAGGCCCATTATCCAAACACAAAATTTCAAGAGAGGAGTTGAAGTAAAAAAAAAGGAAAATGGGGCACATCCACCTGAGTC
i gorGor5.CYUI01015250v1   I 5 C 0
s nomLeu3.chr1a             74107418 103 + 122973662 -----AAAAAAAAATAAAC----------------CAGGATAAAAAATGCCCATTATCCCAACACAGAATTTCAAGAGAGGAGTTGAAGT--GAAAAAAGGAAAATGGAGCACATGCACCTGAGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29186389 105 + 172585720 -------aaaatgacaaaaaaaaaaaaaa------------aaaaaaGACCTATTATCTCAACACAGAATTTCAAGAGAGGAGTTGAAGT--GAAAAAGGGAAAATGGGGCAAATGCACCTAAGTC
i rheMac8.chr4             C 0 I 98327
s macFas5.chr4              28934488 112 - 170955103 aaaaaaaaaaaaaaaaaaaaaaaaaaaaa------------aaaaaaGGCCCATTATCCCAACACAGAATTTCAAGAGAGGAGTTGAAGT--GAGAAAAGGAAAATGGGGCACATGCACCTGAGTC
i macFas5.chr4             I 486 I 57
s chlSab2.chr17             28252434 115 -  71996105 -----AAAAAAAAACAAAAAACAAAAAACCC----CAGGATAAAAAAGGCCCATTATCTCAACACAGAATTTCAAGAGAGGAGTTGAAGT--AAGAAAAGGAAAATGGGGCACATGCACCTGAGTC
i chlSab2.chr17            C 0 I 57
s colAng1.NW_012115566v1     1792745 104 -   3067355 ----------------AAAAAAAAAAAAACC----CAGGATGAAAAAGGCCCATTATCCCAACGCAGAATTTCAAGAGAGGAGTTGAAGT--GAAAAGAGGAAAATGGGGCACATGCACCTGAGTC
i colAng1.NW_012115566v1   C 0 I 57
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140508 217 -    375362 I
e otoGar3.GL873742           1481605  30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e manLeu1.NW_012104165v1     1856035 64708 +   2316924 I
e cerAty1.NW_012001495v1     1741232 53278 -   2157725 I
e macNem1.NW_012011356v1     1895173 18306 -   2996164 I

a score=976230.000000
s hg38.chr6_GL000254v2_alt     87037 322 +   4827813 TTGACAGAATAATTAATTTAGAAATACTTATTTTTgactggacgcagtggctcacatctataatcccagcactttgggaggccgaggcaggtagatcacgaggtcaggagttggagaccaggctggccaacatggtgaaatcccgtctttactaaaaatacaaaaattagtcaggcatggtggtggacgcctgtaatcccagctgcttgggaggctgcagcaggagaattgcttgtgccggggaggcggaggttgcagtgagctgagatcgttccactgcactctagcatgggtaacatagcaagattctgtct-caaaaaaa
s panTro5.chr6              29057613 322 + 175400573 TTGACAGAATAATTAATTTAGAAATACTTATTTTTgaccggacgcagtggctcacatctataatcccagcactttgggaggccgaggcaggtggatcatgaggtcaggagttggagaccaggctggccaacatggtgaaatcccgtctttactaaaaatacaaaaattagtcaggcatggtggtggacacctgtaatcccagctgcttgggaggctgcagcaggagaattgcttgtgccggggaggcggaggttgcagtgagctgagatcgttccactgcactctagcatgggtaacatagcaagattctgtct-caaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29301669 323 + 173848474 TTGACAGAATAATTAATTTAGAAATACTTATTTTTgaccggacgcagtggatcacatctataatcccagcactttgggaggccgaggcaggtggatcatgaggtcaggagttggagaccaggctggccaacatggtgaaatcccgtctttactaaaaatacaaaaattagtcaggcatggtggtggacacctgtaatcccagctgcttgggaggctgcagcaggagaattgcttgtgccggggaggcggaggttgcagtgagctgagatcgttccactgcactctagcatgggtaacatagcaagattctgtctacaaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5101711 322 +   6154872 TTGACAGAATAATTAATTTAGAAATACTTATTTTTgaccggacgcagtggctcacatctataatcccagcactttgggaggccgaggcaggtgaatcacgaggtcaggagttggagaccaggctggccaacatggtgaaaccccgtctttactaaaaatacaaaaattagtcaggcatggtggtggacgcctgtgatcccagctgcttgggaggctgcagcaggagaattgctagtgccggggaggcggaggttgcagtgagctgagatcgttccactgcactctagcatgggaaacatagcaagattctgtct-caaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107521 322 + 122973662 TTGACAGAATAATTAACTTAGAAATCCTTATTTTTgaccggacgcagtggctcacacctataatcccagcactttgggaggccgaggtaggcgaaacacgaggtcaggagttggagaccagcctggccaaaatggtgaaatctcgtctctactaaaaatacaaaaattagtctggcatggtggtggacgcctgtaatcccagctgcttgggaggctgaggcaggagagttgcttgtgctggggaggcagacgttgcagtgagctgagatcattccactgcactgtagcctggctaacatagcaagactccatct-caaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29284821 322 + 172585720 TTGACAGAATAATTAATTTAGAAATACTTATTTTTgaccagacacagtggctcacacctataattccagcactttgggaggccgaggcaggcggatcacgaggtcaggagttggagaccagcctggccaacgtggtgaaatcccgtctctactaaaaatacaaaaattagtcgggcatggtggtggatgcctgtaatcccagctgcttgggaggctgaggcaggagaattgcttgtgcgggggaggtggacgttgcagtgagctgagatcgttccactgcactctagcctgagtgacatagtaagactccgtct-ccaaaaaa
i rheMac8.chr4             I 98327 C 0
s macFas5.chr4              28934657 322 - 170955103 TTGACAGAATAATTAATTTAGAAATACTTATTTTTgaccagacacagtggctcacacctataattccagcactttgggaggccgaggcaggcggatcacgaggtcaggagttggagaccagcctggccaacgtggtgaaatcccgtctctactaaaaatacaaaaattagtcgggcatggtggtggatgcctgtaatcccagctgcttgggaggctgaggcaggagaattgcttgtgcgggggaggtggacgttgcagtgagctgagatcgttccactgcactctagcctgagtgacatagtaagactccgtct-ccaaaaaa
i macFas5.chr4             I 57 C 0
s chlSab2.chr17             28252606 317 -  71996105 TTGACAGAATAATTAATTTAGAAATACTTATTTTTgaccagacacagtggctcacacctataattccagcactttgggaggctgaggcaggcagatcacgaggtcaggagttggagaccagcctggccaacgtagtgaaatcccgtctctactaaaaatacaaaaattagtcgggcatggtggtggatgcctgtaatcccagctgcttgggaggctgaggcaggagaattgcttgtgc-ggggaggtggacgttgcagtgagctgagatcgttccactgcactctagcctgagtgacatagtaagactccgtct-ccaa----
i chlSab2.chr17            I 57 C 0
s colAng1.NW_012115566v1     1792906 319 -   3067355 TAGACAGAATAATTAATTTAGAAATACTTATTTTTgaccggacacagtggctcacacctataattccagcactttgggaggccgaggcaggtggatcaggaggtcaggagttggagaccagcctggccaacgtggcgaaattccgtctctactaaaaatacaaaaattagtcgggcatggtggtggatgcctgtaatcccagctgcttgggaggctgaggcaggagaattgcttgtgcaggggaggcggacattgcagtgagctgagatcgttccactgcactctagcctcagtgacatagcaaggctccatct-ccaaa---
i colAng1.NW_012115566v1   I 57 I 1
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140508 217 -    375362 I
e otoGar3.GL873742           1481605  30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e manLeu1.NW_012104165v1     1856035 64708 +   2316924 I
e cerAty1.NW_012001495v1     1741232 53278 -   2157725 I
e macNem1.NW_012011356v1     1895173 18306 -   2996164 I

a score=157818.000000
s hg38.chr6_GL000254v2_alt     87359 61 +   4827813 aaaaaaaa----------------------aagaaaaaagaaaGAAAGACTTATTTTTGTTCTTTCCTGGATACCAATGAGGA
s panTro5.chr6              29057935 82 + 175400573 aaaaaaaagaaagaaag-aaaagaaaagaaaagaaaaaagaaagaaagaCTTGTTTTTGTTCTTTCCTGGATACCAATGAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29301992 83 + 173848474 aaaaaaaaaaaaaaaagaaaaagaaaagaaaagaaaaaagaaagaaagaCTTGTTTTTGTTCTTTCCTGGATACCAATGAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5102033 77 +   6154872 aaaaaaaaaaaa------aagaaaagaaaagaaaaaaaagaaaGAAAGACTTATTTTTGTTCTTTCCTGGATACCAATGAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107843 56 + 122973662 agaaaaaa---------------------------aaaagaaagaaaTACTTATTTTTGTTCTTTCCTGGATACCAGTAAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29285143 55 + 172585720 ----------------------------aaaaaaaaaagaaaagaaaTACTTATTTTTATTCTTTCCTGCATACCAACAAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28934979 55 - 170955103 ----------------------------aaaaaaaaaagaaaagaaaTACTTATTTTTATTCTTTCCTGCATACCAACAAAGA
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28252923 50 -  71996105 ---------------------------------aaaaaagaaaaaaaTACTTATTTTTATTCTTTCCTGGATACCAACAAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1920743 61 +   2316924 ----------------------aaaaaaaaaaaaaaaaaaaaagaaaTACTTATTTTTATTCTTTCCTGGATACCAACAAAGA
i manLeu1.NW_012104165v1   I 64708 C 0
s colAng1.NW_012115566v1     1793226 61 -   3067355 ----------------------gaaaagaaagaaaaaagaaaagaaaTACTTATTTTTATTCTTTCCTGGATACCAATACAGA
i colAng1.NW_012115566v1   I 1 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140508 217 -    375362 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e cerAty1.NW_012001495v1     1741232 53278 -   2157725 I
e macNem1.NW_012011356v1     1895173 18306 -   2996164 I

a score=25025.000000
s hg38.chr6_GL000254v2_alt     87420 5 +   4827813 AATAA
s panTro5.chr6              29058017 5 + 175400573 AATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29302075 5 + 173848474 AATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5102110 5 +   6154872 AATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107899 5 + 122973662 AATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29285198 5 + 172585720 AATAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28935034 5 - 170955103 AATAA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1794510 5 -   2157725 AATAA
i cerAty1.NW_012001495v1   I 53278 C 0
s chlSab2.chr17             28252973 5 -  71996105 AATAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1920804 5 +   2316924 AATAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1793287 5 -   3067355 AATAA
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140508 217 -    375362 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e macNem1.NW_012011356v1     1895173 18306 -   2996164 I

a score=355950.000000
s hg38.chr6_GL000254v2_alt     87425 65 +   4827813 CTTAAGATTTGGAAATTCTAGGCAAGGTTTCCAGGCTAAAGAAATGTCCTGTCAGTAAGAAACTT
s panTro5.chr6              29058022 65 + 175400573 CTTAAGATTTGGAAATTCTAGACAAGGTTTCCAGGCTAAAGAAATGTCCTGTCAGTAAGAAACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29302080 65 + 173848474 CTTAAGATTTGGAAATTCTAGACAAGGTTTCCAGGCTAAAGAAATGTCCTGTCAGTAAGAAACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5102115 65 +   6154872 CTTAAGATTTGGAAATTCTAGACAAGGTTTCCAGGCTAAAGAAAAGTCCTGTCAGTAAGAAACTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107904 65 + 122973662 CTTAAGATTTGGAAATTCTAGACAAGGGCTCCAGGCTAAAGAAATGTCCTGTCAGTAAGAAACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29285203 63 + 172585720 C--AAGATTTGGAAATTCTAGACAAGGGTTCCAGGCTGAAGAAATGTCCTGTCAGTAAGAAACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28935039 63 - 170955103 C--AAGATTTGGAAATTCTAGACAAGGGTTCCAGGCTGAAGAAATGTCCTGTCAGTAAGAAACTT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1794515 65 -   2157725 CTTAAGATTTGGAAATTCTAGACAAGGGTTCCAGGCTGAAGAAATGTCCTGTCAGTAAGAAACTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28252978 65 -  71996105 CTTAAGATTTGGAAATTCTAGACAAGGGTTCCAGGCTGAAGAAATGTCCTGTCAGTAAGAAACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1920809 65 +   2316924 CTTAAGATTTGGAAATTCTAGACAGGGGTTCCAGGCTGAAGAAATGTCCTGTCAGTAAGAAACTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1793292 65 -   3067355 CTTAAGATTTGGATATTCTAGACAAGGGTTCCAGGCTGAAGAAATGTCCTGTCAATAAGAAACTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            140725 65 -    375362 CTTAAGATTTGGAAATTCTAGACAAGGATGCAAGGCTGAAGAAATGTCTTCTCAGCAAGAAAATC
i saiBol1.JH378348         I 217 I 381
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e macNem1.NW_012011356v1     1895173 18306 -   2996164 I

a score=1517151.000000
s hg38.chr6_GL000254v2_alt     87490 330 +   4827813 AAAAATATTCCTGTAATTAGGACTggtgcggtggttcccacctgtaatcccagcacgtagggaggcagaagcgggcaggttgcttgagcccaggatttcaagaacagctgggggaacatggtgaaacccagtttctacaaaaaaaaagtacaaa------agagagagagagaaagccaggcttgttgttgcatttctgtagtctcagctacccaggaggctgacatgggaggatcgcttgagtccagggaggctgaggctgcagtgagctgtgatcataccactgcactccagcatgggtgacagagtgagaccctgcctcaaaaaaacaaaaCA
s panTro5.chr6              29058087 329 + 175400573 AAAAATATTCCTGTAATTAggcctggtgcggtggttcccacctgtaatcccagcacgctgggaggcagaagcgggcaggttgcttgagcccaggatttcaagaacagctgggggaacatggtgaaacccagtttctacaaaaaaaa-gtacaaa------agagagagagagaaagccaggcttgttgttgcatttctgtagtctcagctacccaggaggctgacatgggaggatcgcttgagtccagggaggctgaggctgcagtgagctgtgatcataccactgcactccagcatgggtgacagagtgagaccctgcctcaaaaaaacaaaaCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29302145 327 + 173848474 AAAAATATTCCTGTAATTAggcctggtgcggtggttcccacctgtaatcccagcacgttgggaggcagaagcgggcaggttgcttgagcccaggatttcaagaacagctgggggaacatggtgaaacccagtttctacaaaaaaaa---tcaaa------agagagagagagaaagccaggcttgttgttgcatttctgtagtctcagctacccaggaggctgacatgggaggatcgcttgagtccagggaggctgaggctgcagtgagctgtgatcataccactgcactccagcatgggtgacagagtgagaccctgcctcaaaaaaacaaaaCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5102180 330 +   6154872 AAAAAT-TTCCTGTAATTACgcctggtgcagtggttcccacctgtaatcccagcacgttgggaggcagaagcgggcaggttgcttgagcccaggatttcaagaacagctgggggaacatggtgaaacccagtttctaccaaaaaca-gtacaaa----agagagagagagagaaagccaggcttgttgttgcatttctgtagtctcagctacccaggaggctgacatgggaggatcgcttgagtccagggaggctgaggctgcagtgagctgtgatcataccactgcactccagcatgggtgacagagtgagaccctgcctcaaaaaaacaaaaCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74107969 334 + 122973662 -AAAATATTCCTGTAATTAggcctggtgccgtagttcccacctgtaatcccagcactttgggaggcagaagcgggcaggttgcttgagcctaggatttcaagaacagctgggggaacatggtgaaacccagtttctacaaaaaaaa-gtacaaaagagagagagagaaagagaaagccaggcttgttgttgcatttctgtagtctcagctactcaggaggctgacatgggaggatcgcttgagtccagggaggctgaggctgcagtgagctgtgatcataccattgcactccagcatgggtgacagagtgagacccagcctcaaaaaaacaaaaCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29285266 323 + 172585720 -AAAATATTCCTGTAATTAggtctggtgcggtggttcccacctgtaatcccagcatgttgggaggcagaaacgggcaggttgcttgagcccaggatttcaacaacagccgggggaacatagtgaagcccagtttctacaaaaaaaa-gtacaaa------agagagacagagaaagccaggcttgttgttgaatttctgtagtctcagatcct-----gcctgacatgggaggatcgcttgagtccagggaggctgaggctgcagtgagctgtgatcataccactgcactccagtgtgggtgacagagtgagaccctgcctcaaaaaaacaaaaca
i rheMac8.chr4             C 0 I 10
s macFas5.chr4              28935102 323 - 170955103 -AAAATATTCCTGTAATTAggtctggtgcggtggttcccacctgtaatcccagcatgttgggaggcagaaacgggcaggttgcttgagcccaggatttcaacaacagccgggggaacatagtgaagcccagtttctacaaaaaaaa-gtacaaa------agagagacagagaaagccaggcttgttgttgaatttctgtagtctcagatcct-----gcctgacatgggaggatcgcttgagtccagggaggctgaggctgcagtgagctgtgatcataccactgcactccagtatgggtgacagagtgagaccctgcctcaaaaaaacaaaaca
i macFas5.chr4             C 0 I 13
s cerAty1.NW_012001495v1     1794580 322 -   2157725 -AAAATATTCCTGTAATTAggtctggtgcggtggttcccacctgtaatcccagcatgttgggaggcagaagcgggcaggttgcttgagcccaggatttcaacaacagccgggggaacatagtgaagcccagtttctac-aaaaaaa-gaacaaa------agagagacagagaaagccaggcttgttgttgcatttctgtagtctcagatcct-----gcctgacatgggaggatcgcttgagtccagggaggctgaggctgcagtgagctgtgatcataccactgcactccagtgtgggtgacagagtgagaccctgcctcaaaaaaacaaaaca
i cerAty1.NW_012001495v1   C 0 T 13471
s chlSab2.chr17             28253043 323 -  71996105 -AAACTATTCCTGTAATTAggtctggtgtggtggttcccacctataatcccagcacgttgggaggcagaagccggcaggctgcttgagcccaggatttcaacaacagccgggggaacatagtgaagcccagtttccacaaaaaaaa-gtacaaa------agagagacagagaaagccaggcttgttgttgcatttctgtagtctcagatcct-----gcctgacatgggaggatcgcttgggtccagggaggctgaggctgcagtgagctgtgatcataccactgcactccagtatgggtgacagagtgagaccctgcctcagaaaaacaaaaca
i chlSab2.chr17            C 0 T 17592
s manLeu1.NW_012104165v1     1920874 324 +   2316924 -AAAATATTCCTGTAATTAggtctggtgcggtggttcccacctgtaatcccagcatgttgggaggcagaagcgggcaggttgcttgagcccaggatttcaacaacagccgggggaacatagtgaagcccagtttctac-aaaaaaa-gtacaaa----agagagagacagagaaagccaggcttgttgttgcatttctgtagtctcagatcct-----gcctgacatgggaggatcgcttgagtccagggaggctgaggctgcagtgagctgtgatcataccactgcactccagtgtgggtgacagagtgagatcctgcctcaaaaaaacaaaaca
i manLeu1.NW_012104165v1   C 0 T 17323
s colAng1.NW_012115566v1     1793357 322 -   3067355 -AAAATATTCCTGTAATTAggtctggtgcgctggttcccatctgtaatcccagcatgttgggaggcagaagtgggcaggttgcttgaccccaggatttcaacaacagctgggggaacatagtgaagtccagtttctac-aaaaaaa-gtacaaa------agagagacagagaaagccaggcttgttgttgcatttctgtagtctcagatcct-----ccctgacatgtgaggatcgcttgagtgcagggagtctgaggctgcagtgggctgtgatcataccactgcactccagtatgggtgacagagtgagaccctgcctcaaaaaaacaaaaca
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140790 381 -    375362 I
e otoGar3.GL873742           1481605  30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e macNem1.NW_012011356v1     1895173 18306 -   2996164 I

a score=111262.000000
s hg38.chr6_GL000254v2_alt     87820 131 +   4827813 Gggccgggcgcggtggttcacactgtaatcccagcactttgggaggccgaggtgggtggatcacgaggtcagtagatcgagaccatcccagctaacatggtgaaaccccgtctctactaaaaatacaaaaa
s panTro5.chr6              29058416 131 + 175400573 Gggccgggcgcggtggttcacactgtaatcccagcactttgggaggccgaggtgggtggatcacgaggtcagtagatcgagaccatcccggttaacatggtgaaaccccgtctctactaaaaatacaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29302472 115 + 173848474 Gggccgggcgcggtggttcacactgtaatcccagcactttgggaggccgaggtgggtg----------------gatcgagaccatcccggttaacatggtgaaaccccgtctctactaaaaatacaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5102510 131 +   6154872 Gggccgggcgcggtggttcacactgtaatcccagcactttgggaggccgaggtgggtggatcacgaggtcagtagatcgagaccatcccggctaacatggtgaaaccccgtctctactaaaaatacaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74108303 131 + 122973662 Gggccgggtgcggtggttcccgctgtaatcccagcactttgggaggccgaggtgggtggatcacgaggtcaggagatcgagaccatcctggttaacatggtgaaaccccgtctctactaaaaatacaagaa
i nomLeu3.chr1a            C 0 I 440
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140790 381 -    375362 I
e otoGar3.GL873742           1481605  30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e colAng1.NW_012115566v1     1793679   0 -   3067355 C
e manLeu1.NW_012104165v1     1921198 17323 +   2316924 T
e chlSab2.chr17             28253366 17592 -  71996105 T
e cerAty1.NW_012001495v1     1794902 13471 -   2157725 T
e macNem1.NW_012011356v1     1895173 18306 -   2996164 I
e macFas5.chr4              28935425  13 - 170955103 I
e rheMac8.chr4              29285589  10 + 172585720 I

a score=48597.000000
s hg38.chr6_GL000254v2_alt     87951 88 +   4827813 attagctgggcgtggtggtgggcgcctgtagtcccagctactcgggagcctgaggcaggagaatggcgtggacccgggaggcggcgct
s panTro5.chr6              29058547 88 + 175400573 attagctgggcgtggtggcgggcgcctgtagtcccagctactcgggagcctgaggcaggagaatggcgtggacccgggaggcggcgct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29302587 88 + 173848474 attagctgggcgtggtggcgggcgcctgtagtcccagctactcgggagcctgaggcaggagaatggcgtggacccgggaggcggccct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5102641 88 +   6154872 attagctgggcgtggtggcggacgcctgtagtcccagctactcgggatcctgaggcaggagaatggcgtggacccgggaggcggagct
i gorGor5.CYUI01015250v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140790 381 -    375362 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e colAng1.NW_012115566v1     1793679  0 -   3067355 C
e manLeu1.NW_012104165v1     1921198 17323 +   2316924 T
e chlSab2.chr17             28253366 17592 -  71996105 T
e cerAty1.NW_012001495v1     1794902 13471 -   2157725 T
e macNem1.NW_012011356v1     1895173 18306 -   2996164 I
e macFas5.chr4              28935425 13 - 170955103 I
e rheMac8.chr4              29285589 10 + 172585720 I
e nomLeu3.chr1a             74108434 440 + 122973662 I

a score=74882.000000
s hg38.chr6_GL000254v2_alt     88039 71 +   4827813 tgcagtaagccgagatcgtgccactgcactacagcctgggcgacagagcgagactccgtctcaaaaaaaa-g
s panTro5.chr6              29058635 72 + 175400573 tgcagtgagccgagatcgtgccactgcactacagcctgggcgacagaacgagactccgtctcaaaaaaaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29302675 72 + 173848474 tgcagtgagccgagatcgtgccactgcactacagcctgggcgacagaacgagactccgtctacaaaaaaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5102729 71 +   6154872 tgcagtgagccgagatcgcgccactgcactacagcctgggcgacagagcgagactccgtctcaaaaaaaa-g
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012001495v1     1781431 71 -   2157725 tgcagtgagctgtgatcataccactgcactccagcatgggtgacagagtgagaccctgcctcaaacaaaac-
i cerAty1.NW_012001495v1   T 13471 I 13405
s manLeu1.NW_012104165v1     1903875 71 +   2316924 tgcagtgagctgtgatcataccactgcactccagcatgggtgacagagtgagaccctgcctcaaacaaaac-
i manLeu1.NW_012104165v1   T 17323 I 6
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140790 381 -    375362 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e colAng1.NW_012115566v1     1793679  0 -   3067355 C
e chlSab2.chr17             28253366 17592 -  71996105 T
e macNem1.NW_012011356v1     1895173 18306 -   2996164 I
e macFas5.chr4              28935425 13 - 170955103 I
e rheMac8.chr4              29285589 10 + 172585720 I
e nomLeu3.chr1a             74108434 440 + 122973662 I

a score=12285.000000
s hg38.chr6_GL000254v2_alt     88110 3 +   4827813 aaa
s panTro5.chr6              29058707 3 + 175400573 aaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29302747 3 + 173848474 aaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5102800 3 +   6154872 aaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29285599 3 + 172585720 aaa
i rheMac8.chr4             I 10 C 0
s macNem1.NW_012011356v1     1913479 3 -   2996164 aaa
i macNem1.NW_012011356v1   I 18306 C 0
s cerAty1.NW_012001495v1     1794907 3 -   2157725 aaa
i cerAty1.NW_012001495v1   I 13405 C 0
s chlSab2.chr17             28235774 3 -  71996105 aaa
i chlSab2.chr17            T 17592 C 0
s manLeu1.NW_012104165v1     1903952 3 +   2316924 aaa
i manLeu1.NW_012104165v1   I 6 C 0
s colAng1.NW_012115566v1     1793679 3 -   3067355 aaa
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140790 381 -    375362 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e macFas5.chr4              28935425 13 - 170955103 I
e nomLeu3.chr1a             74108434 440 + 122973662 I

a score=311404.000000
s hg38.chr6_GL000254v2_alt     88113 67 +   4827813 GTTATTTTCC-CAGCAGTTTAACTGCAGAGCTATGGAGTTGACTCAAGATACAAAC-CGAGGTGtttct
s panTro5.chr6              29058710 69 + 175400573 GTTATTTTCCACAGCAGTTTAACTGCAGAGCTATGGAGTTGACTCAAGATACAAACACGAGGTGtttct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29302750 67 + 173848474 GTTATTTTCC-CAGCAGTTTAACTGCAGAGCTATGGAGTTGACTCAAGATACAAAC-CGAGGTAtttct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5102803 67 +   6154872 GTTATTTTCC-CAGCAGTTGAACTGCAGAGCTATGGAGTTGACTCAAGATACAAAC-CGAGGTGTTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29285602 67 + 172585720 GTTATTTTTC-CAGCAGTTTAACTGCAGAGCTATGGAGGTGACTCAAGATACAAAC-CGAGGGGTTTCT
i rheMac8.chr4             C 0 T 16523
s macFas5.chr4              28935438 67 - 170955103 GTTATTTTTC-CAGCAGTTTAACTGCAGAGCTATGGAGGTGACTCAAGATACAAAC-CGAGGGGTTTCT
i macFas5.chr4             I 13 C 0
s macNem1.NW_012011356v1     1913482 67 -   2996164 GTTATTTTTC-CAGCAGTTTAACTGCAGAGCTATGGAGGTGACTCAAGATACAAAC-CGAGGGGTTTCT
i macNem1.NW_012011356v1   C 0 T 17694
s cerAty1.NW_012001495v1     1794910 67 -   2157725 GTTATTTTTC-CAGCAGTTTAACTGCAGAGCTATGGAGGTGACTCAAGATACAAAC-CGAGGGGTTTCT
i cerAty1.NW_012001495v1   C 0 T 13399
s chlSab2.chr17             28235777 67 -  71996105 GTTATTTTTC-CAGCAGTTTAACTGCAGAGCTATGGAGTTGACTCAAGGTACAAAC-CCAGGTTTTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1903955 67 +   2316924 GTTATTTTTC-CAGCAGTTTAACTGCAGAGCTATGGAGTTGACTCAAGGTACAAAC-CCAGGTTTTTCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1793682 67 -   3067355 GTTATTTTTC-CAGCAGTTTAACTGCAGAGCTATGGAGGTGACTCAAGATACAAAC-CGAGGGGTTTCT
i colAng1.NW_012115566v1   C 0 T 15896
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140790 381 -    375362 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e nomLeu3.chr1a             74108434 440 + 122973662 I

a score=82059.000000
s hg38.chr6_GL000254v2_alt     88180 153 +   4827813 ttctttttt------------------tttttttgagacggagtctcgctctgtcacccaggctggattgcagtggtgcgatctcagctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgagactacaggcgcccgccacc
s panTro5.chr6              29058779 162 + 175400573 ttttttttt---------ctttctttttttttttgagacggagtctcgctctgtcacccaggctggattgcagtggtgcgatctcagctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgagactacaggcgcccgccacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29302817 155 + 173848474 tcttttttt----------------ttttttttgtagacggagtctcgctctgtcacccaggctggattgcagtggtgcgatctcagctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgagactacaggcgcccgccacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5102870 171 +   6154872 TTGtttttttttttttttttttttttttttttttgagacggagtctcgctctgtcacccaggctgaattgcagtggtgcgatctcagctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgagactacaggcgcccgccacc
i gorGor5.CYUI01015250v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140790 381 -    375362 I
e otoGar3.GL873742           1481605  30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e colAng1.NW_012115566v1     1793749 15896 -   3067355 T
e manLeu1.NW_012104165v1     1904022   0 +   2316924 C
e chlSab2.chr17             28235844   0 -  71996105 C
e cerAty1.NW_012001495v1     1794977 13399 -   2157725 T
e macNem1.NW_012011356v1     1913549 17694 -   2996164 T
e macFas5.chr4              28935505   0 - 170955103 C
e rheMac8.chr4              29285669 16523 + 172585720 T
e nomLeu3.chr1a             74108434 440 + 122973662 I

a score=117157.000000
s hg38.chr6_GL000254v2_alt     88333 133 +   4827813 gcgccccactaatttttttgtacttttagtagagacgggggtttcaccgtggtctcgatctcctgacctcgtgatccacccgcttcggcctcccaaagtgctgggattacaggcctgagccactgcgcccggc
s panTro5.chr6              29058941 133 + 175400573 gcgcccgactaatttttttgtatttttagtagagacgggggtttcaccgtggtctcgatctcctgacctcgtgatccacccgcttcggcctcccaaagtgctgggattacaggcctgagccactgcgcccggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29302972 133 + 173848474 gcgcccgactaatttttttgtattttttgtagagacgggggtttcaccgtggtctcgatctcctgacctcgtgatccacccgcttcggcctcccaaagtgctgggattacaggcctgagccactgcgcccggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5103041 133 +   6154872 gcgcccgactaatttttttgtatttttagtagagacgggggtttcaccgtggtctcgatctcctgacctcgtggtccacccgcctcggcctcccaaagtgctgggattacaggcctgagccactgcgcccggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74108874 132 + 122973662 Gcgcccagctaatttttttgtatttttagtagagac-ggggtttcaccgtggtctcgatctcttgacctcgtgatccgcctgcctcggcctcccaaaatgcggggattacaggcgtgagccaccgcgcccggc
i nomLeu3.chr1a            I 440 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            140790 381 -    375362 I
e otoGar3.GL873742           1481605  30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e colAng1.NW_012115566v1     1793749 15896 -   3067355 T
e manLeu1.NW_012104165v1     1904022   0 +   2316924 C
e chlSab2.chr17             28235844   0 -  71996105 C
e cerAty1.NW_012001495v1     1794977 13399 -   2157725 T
e macNem1.NW_012011356v1     1913549 17694 -   2996164 T
e macFas5.chr4              28935505   0 - 170955103 C
e rheMac8.chr4              29285669 16523 + 172585720 T

a score=17319.000000
s hg38.chr6_GL000254v2_alt     88466 17 +   4827813 cAAACCGAGGTTTTTGG
s panTro5.chr6              29059074 17 + 175400573 cAAACCGAGGTTTTTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29303105 17 + 173848474 cAAAACGAGGTTTTTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5103174 17 +   6154872 cAAACCGAGGTTTTTCG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109006 17 + 122973662 cAAACCGAGGTTTTTCT
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378348            141171 17 -    375362 CAAACCCCGGTTTTTCT
i saiBol1.JH378348         I 381 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I
e colAng1.NW_012115566v1     1793749 15896 -   3067355 T
e manLeu1.NW_012104165v1     1904022  0 +   2316924 C
e chlSab2.chr17             28235844  0 -  71996105 C
e cerAty1.NW_012001495v1     1794977 13399 -   2157725 T
e macNem1.NW_012011356v1     1913549 17694 -   2996164 T
e macFas5.chr4              28935505  0 - 170955103 C
e rheMac8.chr4              29285669 16523 + 172585720 T

a score=355363.000000
s hg38.chr6_GL000254v2_alt     88483 61 +   4827813 AATTGCAAAATGTTTCTTGAATATACCACTACCACATATATACACTCATACAGCATAATAG
s panTro5.chr6              29059091 61 + 175400573 AATTGCAAAATGTTTCTTGAATATACCACTACCACATATATACACTCATACAGCATAATAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29303122 61 + 173848474 AATTGCAAAATGTTTCTTGAATATACCACTACCACATATATACACTCATACAGCATAATAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5103191 61 +   6154872 AATTGCAAAATATTTCTTGAATATACCACTACCACATATATACACTCATACAGCATAATAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109023 61 + 122973662 AATTGCAAAATGTTTCTTGAATATACCACCACCACATATATACACTCATACAATATAATAG
i nomLeu3.chr1a            C 0 I 3
s rheMac8.chr4              29269146 61 + 172585720 AATTGCAAAATGTTTCTTGAATATACCACCACCACATATATGCACTCATACAGTATAATAG
i rheMac8.chr4             T 16523 I 16507
s macFas5.chr4              28935505 45 - 170955103 AATTGCAAAATGTTTCTTGAATATACCACCACCAC-----------CACATAGTTC-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1895855 61 -   2996164 AATTGCAAAATGTTTCTTGAATATACCACCACCACATATATGCACTCATAGAGTATAATAG
i macNem1.NW_012011356v1   T 17694 I 17678
s cerAty1.NW_012001495v1     1781578 61 -   2157725 AATTGCAAAATGTTTCTTAAATATACCACCACCACATATATGCACTCATACAGTATAATAG
i cerAty1.NW_012001495v1   T 13399 I 13383
s chlSab2.chr17             28235844 61 -  71996105 AATTGCAAAATGTTTCTTGAATATACCACCACCACATATATGCACTCATACAGTATAATAG
i chlSab2.chr17            C 0 I 17586
s manLeu1.NW_012104165v1     1904022 61 +   2316924 AATTGCAAAATGTTTCTTAAATATACCACCACCACATATATGCACTCATACAGTATAATAG
i manLeu1.NW_012104165v1   C 0 I 17244
s colAng1.NW_012115566v1     1777853 61 -   3067355 AATTACAAAATGTTTCTTGAATATACCACCACCACATATATACACTCATACAGTATAATAG
i colAng1.NW_012115566v1   T 15896 I 15880
s saiBol1.JH378348            141188 61 -    375362 AATATCAAAATATTTCTTGCGTATACCACACCCCTATATCGATGCTCATACAGCATAATAG
i saiBol1.JH378348         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=116572.000000
s hg38.chr6_GL000254v2_alt     88544 18 +   4827813 TTCTTCTAC---AGGTTTCTT
s panTro5.chr6              29059152 18 + 175400573 TTCTTCTAC---AGGTTTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29303183 18 + 173848474 TTCTTCTAC---AGGTTTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5103252 18 +   6154872 TTCTTCTAC---AGGTTTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109087 18 + 122973662 TTCTTCTAC---AGGTTTCTT
i nomLeu3.chr1a            I 3 C 0
s rheMac8.chr4              29285714 18 + 172585720 TTCTTTTAC---AGGTTTCTT
i rheMac8.chr4             I 16507 C 0
s macFas5.chr4              28935550 18 - 170955103 TTCTTTTAC---AGGTTTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1913594 18 -   2996164 TTCTTTTAC---AGGTTTCTT
i macNem1.NW_012011356v1   I 17678 C 0
s cerAty1.NW_012001495v1     1795022 18 -   2157725 TTCTTTTAC---AGGTTTCTT
i cerAty1.NW_012001495v1   I 13383 C 0
s chlSab2.chr17             28253491 18 -  71996105 TTCTTTTAC---AGGTTTCTT
i chlSab2.chr17            I 17586 C 0
s manLeu1.NW_012104165v1     1921327 18 +   2316924 TTCTTTTAC---AGGTTTCTT
i manLeu1.NW_012104165v1   I 17244 C 0
s colAng1.NW_012115566v1     1793794 18 -   3067355 TTCTTTTAC---AGGTTTCTT
i colAng1.NW_012115566v1   I 15880 C 0
s saiBol1.JH378348            141249 21 -    375362 TTCTTTCACTGTATGTTTCTT
i saiBol1.JH378348         C 0 I 30
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=105903.000000
s hg38.chr6_GL000254v2_alt     88562 19 +   4827813 CATAGTTCTTGTGATTTAA
s panTro5.chr6              29059170 19 + 175400573 CATAGTTCTTGTGATTTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29303201 19 + 173848474 CATAGTTCTTGTGATTTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5103270 19 +   6154872 CATAGTTCTTGTGATTTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109105 19 + 122973662 CATATTTCTTGTGATTTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29285732 19 + 172585720 CACATTTCTTGTGATTTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28935568 19 - 170955103 CACATTTCTTGTGATTTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1913612 19 -   2996164 CACATTTCTTGTGATTTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1795040 19 -   2157725 CACATTTCTTGTGATTTAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28253509 19 -  71996105 CACATTTCTTGTGATTTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1921345 19 +   2316924 CACATTTCTTGTGATTTAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1793812 19 -   3067355 CACATTTCTTGTGATTTAA
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            141270 30 -    375362 I
e otoGar3.GL873742           1481605 30 -   2232465 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=31543.000000
s hg38.chr6_GL000254v2_alt     88581 5 +   4827813 AACAC
s panTro5.chr6              29059189 5 + 175400573 AACAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29303220 5 + 173848474 AACAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5103289 5 +   6154872 AACAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109124 5 + 122973662 AACAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29285751 5 + 172585720 AACAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28935587 5 - 170955103 AACAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1913631 5 -   2996164 AACAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1795059 5 -   2157725 AACAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28253528 5 -  71996105 AACAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1921364 5 +   2316924 AACAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1793831 5 -   3067355 AATAC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1481635 5 -   2232465 AATCC
i otoGar3.GL873742         I 30 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            141270 30 -    375362 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=720387.000000
s hg38.chr6_GL000254v2_alt     88586 96 +   4827813 CCCTGCCCAACACACATAAATAACATCAAATCAGAAATGAATTGTAATTGCCACAGTCTATAGCATATTGGAATTTCTTAGGTTTTAAAATTAGTA
s panTro5.chr6              29059194 96 + 175400573 CCCTGCCCAACACACATAAATAACATCAAATCAGAAATGAATTGTAATTGCCACAGTCTATAGCATATTGGAATTTCTTAGGTTTTAAAATTAGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29303225 96 + 173848474 CCCTGCCCAACACACATAAATAACATCAAATCAGAAATGAATTGTAATTGCCACAGTCTATAGCATATTGGAATTTCTTAGGTTTTAAAATTAGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5103294 96 +   6154872 CCCTGCCCAACACACATAAATAACATCAAATCAGAAATGAATTGTAATTGCCACAGTCTATAGCATATTGGAATTTCTTAGGTTTTAAAATTAGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109129 96 + 122973662 CCCTGCCCAACACACATAAATAACATCAAATCAGAAATGAATTGTAATTGACACAGTCTATAGCATATTGGAATTTCTTAGGTTTTAAAATTAGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29285756 96 + 172585720 CCCCACCCAACACATATAAATAACATCAAATCAGAAATGAATTGTAATTGCCACAGTCTATAGCATATTGGAATTTCTTAGATTTTAAAATTAGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28935592 96 - 170955103 CCCCACCCAACACATATAAATAACATCAAATCAGAAATGAATTGTAATTGCCACAGTCTATAGCATATTGGAATTTCTTAGATTTTAAAATTAGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1913636 96 -   2996164 CCCCACCCAACACATATAAATAACATCAAATCAGAAATGAATTGTAATTGCCACAGTCTATAGCATATTGGAATTTCTTAGATTTTAAAATTAGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1795064 96 -   2157725 CCCCACCCAACACACATAAATAACATCAAATCAGAAATGAATTGTAATTGCCACAGTCTATAGCATATCGGAATTTCTTAGATTTTAAAATTGGTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28253533 96 -  71996105 CCCCACCCAACACACATAAATAACATCAAATCAGAAATGAATTGTAATTGCCACAGTCTACAGCATATTGGAATTTCTTAGATTTTAAAATTAGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1921369 96 +   2316924 CCCCACCCAACACACATAAATAACATCAAATCAGAAATGAATTGTAATTGCCACAGTCTATAGCATATCGGAATTTCTTAGATTTTAAAATTGGTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1793836 96 -   3067355 CCCCACCCAACACACATAAATAACATCAAATCAGAAATGAATTGTAATTGCCACAGTCTATAGCATATTGGAATTTCTTAGATTTTAAAATTAGTA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            141300 96 -    375362 CCCCACCTAATACATATAAGTAACATCAAATAAAAAATGACTTGTAAATGCCACGGTATAAAGCACATTGGAATTTCTTAGGTTTTAAAAGTAATA
i saiBol1.JH378348         I 30 C 0
s otoGar3.GL873742           1481640 96 -   2232465 CCTCTCCCTACACACATTCATAATATTAAATCGGAAATGAATTGTAAGTGCAACAGCATACAGAATATTGGAATTTCTTTGTTTTTAAAACTAATA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171318829 9442 - 171630274 I

a score=208934.000000
s hg38.chr6_GL000254v2_alt     88682 27 +   4827813 ACTTTCTAGA-TTTAAGATTTTAAATAA
s panTro5.chr6              29059290 27 + 175400573 ACTTTCTAGA-TTTAAGATTTTAAATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29303321 27 + 173848474 ACTTTCTAGA-TTTAAGATTTTAAATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5103390 27 +   6154872 ACTTTCTAGA-TTTAAGATTTTTAATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109225 27 + 122973662 ACTTTCTAGA-TTTAAGATTTTAAATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29285852 27 + 172585720 ACTTTCTAGA-TTTAAGATTTTAAATGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28935688 27 - 170955103 ACTTTCTAGA-TTTAAGATTTTAAATGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1913732 27 -   2996164 ACTTTCTAGA-TTTAAGATTTTAAATGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1795160 27 -   2157725 ACTTTCTAGA-TTTCAGATTTTAAATAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28253629 27 -  71996105 ACTTTCTAGA-TTTAAGATTTTAAATAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1921465 27 +   2316924 ACTTTCTAGA-TTTCAGATTTTAAATAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1793932 27 -   3067355 ACTTTCTAGA-TTTAAGATTTTAAATAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328271 27 - 171630274 ACTTCCCAGG-TTGAAGACTTTAAGCAA
i calJac3.chr4             I 9442 C 0
s saiBol1.JH378348            141396 26 -    375362 ACTTGCTA-G-TTTAAGGCTTTAAATAA
i saiBol1.JH378348         C 0 I 15133
s otoGar3.GL873742           1481736 28 -   2232465 ATTTCCTAGGttttaaaattttaaataa
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I

a score=304353.000000
s hg38.chr6_GL000254v2_alt     88709 42 +   4827813 TTTACATACCATCAGTTAACACTTCATGGAAGACTTCAGTGG
s panTro5.chr6              29059317 42 + 175400573 TTTACATACCGTCAGTTAACACTTCATGGAAGACTTCAGTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29303348 42 + 173848474 TTTATATACCGTCAGTTAACACTTCATGGAAGACTTTAGTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5103417 42 +   6154872 TTTACATACCGTCAGTTAACACTTCATGGAAGACTTCAGTGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109252 42 + 122973662 TTTACATACCGTCAGTTAACACTTCATGGAAGACTTCAGTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29285879 42 + 172585720 TTTACATGCCATCAGTTAACACTTCATGGAAGATTTCAGTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28935715 42 - 170955103 TTTACATGCCATCAGTTAACACTTCATGGAAGATTTCAGTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1913759 42 -   2996164 TTTACATGCCATCAGTTAACACTTCATGGAAGGTTTCAGTGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1795187 42 -   2157725 TTTACATGCCATCAGTTAACACTTCATGGAAGATTTCAGTGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28253656 42 -  71996105 TTTACATGCCATCAGTTAACACTTCATGGAAGATTTCAGTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1921492 42 +   2316924 TTTACATGCCATCAGTTAACACTTCATGGAAGATTTCAGTGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1793959 42 -   3067355 TTTACATGCCATCAGTTAATACTTCATGGAAGATTTCAGTAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328298 38 - 171630274 TTTATGTAATGTC----ACCGCCTCATGGAAGACTTCAGCGG
i calJac3.chr4             C 0 I 188
s saiBol1.JH378348            156555 38 -    375362 TTTACGTAATGTC----AACACCTCATGGAAGACCTCAGTGG
i saiBol1.JH378348         I 15133 I 16
s otoGar3.GL873742           1481764 42 -   2232465 aataGGCACTATCAGTTAGAACTTCATTGATGCCCCTCGTGG
i otoGar3.GL873742         C 0 I 14
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I

a score=108966.000000
s hg38.chr6_GL000254v2_alt     88751 13 +   4827813 AGAGAGTGataca
s panTro5.chr6              29059359 13 + 175400573 AGAGAGTGataca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29303390 13 + 173848474 AGAGAGTGataca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5103459 13 +   6154872 AGAGAGTGataca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109294 13 + 122973662 AGAGAGTGataca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29285921 13 + 172585720 AGAGAGTGataca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28935757 13 - 170955103 AGAGAGTGataca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1913801 13 -   2996164 AGAGAGTGataca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1795229 13 -   2157725 AGAGAGTGataca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28253698 13 -  71996105 AGAGAGTGataca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1921534 13 +   2316924 AGAGAGTGataca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1794001 13 -   3067355 AGAGAGTGataca
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            156609 13 -    375362 AGAGAGTGATACA
i saiBol1.JH378348         I 16 I 161
s otoGar3.GL873742           1481820 13 -   2232465 AGAGAGTGATAAA
i otoGar3.GL873742         I 14 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171328336 188 - 171630274 I

a score=983271.000000
s hg38.chr6_GL000254v2_alt     88764 172 +   4827813 aatatacatac--atatatatatacatTACCTTTATGGAATTTTCAAAAAGC----AAAAAATGGGACTTA-TATATAG------------------------------------ACCTCTGGGATTGGTGTGCAAGTGTTGTATAAAGGAAA------------------------GACAATTATGCAAC-AACCAAAAGGTATCtgccgaaacccgggattgaaccagggaccttt-aa
s panTro5.chr6              29059372 171 + 175400573 aatagacatac--atatatatatacattacCTTTATGCAATTTTCAAAAAGC----AAAAAATGGGAGTTA-TATATAG------------------------------------ACCTCTGGGATTGGTGTGCAAGTGTTGTATAAAGGAAA------------------------GACAATTATGCAAC-AACCAAAAGGTATCtgccaaaacccgggattgaaccagggaccttt-a-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29303403 171 + 173848474 aatagacatac--atatatatatacattacCTTTATGCAATTTTCAAAAAGC----AAAAAATGGGAGTTA-TATATAG------------------------------------ACCTCTGGGATTGGTGTGCAAGTGTTGTATAAAGGAAA------------------------GACAATTATGCAAC-AACCAAAAGGTATCtgccgaaacccgggattgaaccagggaccttt-a-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5103472 173 +   6154872 aatatacatacatatatatatatacattacCTTTATGGAATTTTTAAAAAGC----AAAAAATGGGAGTTA-TATATAG------------------------------------ACCTCTGGGATTGGTGTGCAAGTGTTGTATAAAGGAAA------------------------GACAATTATGCAAC-AACCAAAAGGTGTCtgccgaaacccgggattgaaccagggaccttt-a-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109307 173 + 122973662 aatatacatac--atatatatatacatTACCTTTATGGAATTTTTTAAAAGC--CAAAAAAATTGGAGTTC-TATATAG------------------------------------ACCTCTGGGGTTGGTGTGCAAGTGTTGTATAAAGGAAA------------------------GACAATTATGCAAC-AACCAAAAGGCATCtgctgaaacccgggattgaaccaaggactttt-a-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29285934 176 + 172585720 aatatacatac--atatatatgtacatTACCTTTATGGAATTTTCAAAAAACAGCAAAAAAATTGGAGTTA-TATATAG------------------------------------ACCTCTGGAATTGGTGTGCAAGTGTTGTATAAGGGAAA------------------------GACAACTATGCAAA-AACCAAAAGACATCtgccgaaacccgggattgaaccagggacctttaa-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28935770 175 - 170955103 aatatacatac--atatatatgtacatTACCTTTATGGAATTTTCAAAAAACAGCAAAAAAATTGGAGTTA-TATATAG------------------------------------ACCTCTGGAATTGGTGTGCAAGTGTTGTATAAGGGAAA------------------------GACAACTATGCAAA-AACCAAAAGACATCtgccgaaacccgggattgaaccagggaccttt-a-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1913814 175 -   2996164 aatatacatac--atatatatgtacatTACCTTTATGGAATTTTCAAAAAACAGCAAAAAAATTGGAGTTA-TATATAG------------------------------------ACCTCTGGAATTGGTGTGCAAGTGTTGTATAAGGGAAA------------------------GACAACTATGCAAA-AACCAAAAGACATCtgccgaaacccgggattgaaccagggaccttt-a-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1795242 175 -   2157725 aatatacatac--atatatatgtacatTACCTTTATGGAATTTTCAAAAACCAGCAAAAAAATTGGAGTTA-TATATAG------------------------------------ACCTCTGGAATTGGTGTGCAAGTGTTGTATAAGGGAAA------------------------GACAACTATGCAAA-AACCAAAAGACATCtgccgaaacccgggattgaaccagggaccttt-a-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28253711 176 -  71996105 aatatacatac--atatatatgtacatTACCTTTATGGAATTTTCAAAAAACAGCCAAAAAATTGGAGTTA-TATATAG------------------------------------ACCTCTGGAATTGGTGTGCAAGTGTTGTATAAGGGAAA------------------------GACAACTATGCAAA-AACCAAAAGACATCtgccgaaacccgggattgagccagggacctttga-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1921547 175 +   2316924 aatatacatac--atatatatgtacatTACCTTTATGGAATTTTCAAAAACCAGCAAAAAAATTGGAGTTA-TATATAG------------------------------------ACCTCTGGAATTGGTGTGCAAGTGTTGTATAAGGGAAA------------------------GACTACTATGCAAA-AACCAAAAGACATCtgccgaaacccgggattgaaccagggaccttt-a-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1794014 177 -   3067355 aacatacatac--atatataagtacatCACCTTTATGGAATTTTCAAAAAACAGCCAAAAAATTGGAGTTA-TATATAG------------------------------------ACCTCTGGAATTGGTGTGCAAGTGTTGTATAACGGAAA------------------------GACAATTATGCAAATAACCAAAAGACACCtgccgaaacccgggattgaaccagggacctttaa-
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1481833 221 -   2232465 --------AAT--ATACATATGTGCATTACTTTGATCAAATTTGCAAAAA------TAAAAGTTGTAGTTATTATATAAAGTAGCACACAAACTTTATGGCCACCGTGTAAACACACTTATGAGATCCGTGTACAAGTTTTGCATTAGGAAGGTTGCGAAGCACTGCATTGGTGACTGGTCATTACAGGAC--ATTAAAATAAGTCtgccgaaacccgggatcgaaccagggaccttt-a-
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            156622 161 -    375362 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171328336 188 - 171630274 I

a score=1672677.000000
s hg38.chr6_GL000254v2_alt     88936 221 +   4827813 gatcttcagtctaacgctctccccactgagctatttcggcTACTCTGGAGCTGTCCCGTTGGTCATTTCTTCAAATTATAAAAACTGCAATTTGTAAGGTCAGTGTATCTTCCAA-CGCCTAATTCGGTTGTCTTCAATATCACCCGTCATTCACTCACCTCCCC-CC-AATCCAAAAATATAAATTCTGCTGTAATTTATGTATGAAAATAGGATCCAATTTT
s panTro5.chr6              29059543 221 + 175400573 gatcttcagtctaacgctctcccaactgagctatttcggcTACTCTGGAGCTGTCCTGTTGGTCATTTCTTCAAAATATAAAAACTGCAATTTGTAAGGTCAGTGTATCTTCCAA-CGCCTAATTCGGTTGTCTTCAATATCACCCGTCATTCACTTACCTCCCC-CC-AATCCAAAAATATAAATTCTGCTGTAATTTATGTGTGAAAATAGGATCCAATTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29303574 221 + 173848474 gatcttcagtctaacgctctcccaactgagctatttcggcTACTCTGGAGCTGTCTTGTTGGTCATTTCTTCAAAATATAAAAACTGCAATTTGTAAGGTCAGTGTATCTTCCAA-CGCCTAATTCGGTTGTCTTCAATATCACCCGTCATTCACTTACCTCCCC-CC-AATCCAAAAATATAAATTCTGCTGTAATTTATGTGTGAAAATAGGATCCAATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5103645 221 +   6154872 gatcttcagtctaacgctctcccaactgagctatttcggcTACTCTGGAGCTGTCCCCTTGGTCATTTCTTCAAAATATAAAAACTGCAATTTGTAAGGTCAGTGTATCTTCCAA-CGTCAAATTCGGTTGTCTTCAATATCACCCGTCATTCACTCACCTCCCC-CC-AATCCAAAAATATAAATTCTGCTGTAATTTATGTGTGAAAATAGGATCCAATTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109480 222 + 122973662 aaatttcagtctaacgctctcccaactgagctatttcagcTGCTCTAGATGTATTCTGTTAGTCATTTCTTCAAAATATAAAAACTGCCATTTGTAAGGTCAGTGTATCTTCCAA-TGCCTAATTCTGTTGTCTTCAATATCACCCGTCATTCACTCACCTCCCC-CCTAATCCAAAAATATAAGTTCTGCTGCAATTTATGTGTGAAAATAGGATCCAATTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29286110 222 + 172585720 gatcttcagtctaatgctctcccaactgagctatttcggcTACCCTAGGTTTGTTTCATTAGCCATTTCTTCAAAATATAAAAACTGCCATTTGTAAGGTCAGTGTATCTTCCAA-TGCCTAATTCTGTTGTCTTCAGTATCACCCGTCATTCACTCACCTTCCCAAC-AATCCAAAAATACAAGTTCTGCTGCAATTTATGTCCGAAAATAGGATCCAATTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28935945 222 - 170955103 gatcttcagtctaatgctctcccaactgagctattccagcTACCCTAGGTTTGTTTCATTAGCCATTTCTTCAAAATATAAAAACTGCCATTTGTAAGGTCAGTGTATCTTCCAA-TGCCTAATTCTGTTGTCTTCAGTATCACCCGTCATTCACTCACCTTCCCAAC-AATCCAAAAATACAAGTTCTGCTGCAATTTATGTCCGAAAATAGGATCCAATTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1913989 222 -   2996164 gatcttcagtctaatgctctcccaactgagctatttcggcTACCCTAGGTTTGTTTCATTAGCCATTTCTTCAAAATATAAAAACTGCCATTTGTAAGGTCAGTGTATCTTCCAA-TGGCTAATTCTGTTGTCTTCAGTATCACCCGTCATTCACTCACCTTCCCAAC-AATCCAAAAATACAAGTTCTGCTGCAATTTATGTCCGAAAATAGGATCCAATTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1795417 222 -   2157725 gatcttcagtctaacgctctcccaactgagctatttcggcTGCTTTAGGTTTCTTTTTTTAGTTATTTCTTCAAAATATAAAAATTGCCATTTGTAAGGTCAGTGTATCTTCCAA-TGCCTAATTCTGTTGTCTTCAGTATCACCCGTCATTCACTCACCTTCCCGAC-AACTCAAAAATACAAGTTCTGCTGCAATTTATGTCCGAAAATAGGATCCAATTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28253887 222 -  71996105 gatcttcagtctaacgctctcccaactgagctatttcggcTACCCTAGGTTTGTTTCATTAGTCTTTTCTTCAAAATATAAAAACTGCCATTTGTAAGGTCAGTGTATCTTCCAA-TGCCTAATTCTGTTGTCTTCAGTATCACCCGTCATTCACTCACCTTCCCGAC-AATCCAAAAATACAAGTTCTGCTGCAATTTATGTCCGAAAATAGGATCCAATTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1921722 222 +   2316924 gatcttcagtctaacgctctcccaactgagctatttcggcTACCATAGGTTTGTTTCATTAGTCATTTCTTCAAAATATAAAAACTGCCATTTGTAAGGTCAGTGTATCTTCCAA-TGCCTAATTCTGTTGTCTTCAGTATCACCCGTCATTCACTCACCTTCCCGAC-AATCCAAAAATACAAGTTCTGCTGCAATTTATGTCCGAAAATAGGATCCAATTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1794191 222 -   3067355 gatcttcagtctaacgctctcccaactgagctatttcggcTGCCCAAGGATTGTTTCATTAGTCATTTCTTCAAAATGTAAAACCTGCCATTTGTAAGGTCAGTGTATTTTCCAG-TGCCTAATTCTGTTGTCTTCAGTATCACCCGTCATTCACTCACCTTCCCGCC-AATCCAAAAATACAAGTTCTGCTGCAATTTATGTCCGAAAATAGGATCCAATTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328524 219 - 171630274 gatcttcagtctaacgctctcccaactgagctatttcggcTACTCTGAAATGATTCTTTTAGCCATTGCTTCAAAACATAAAACCTGTCATTTGTAGGGTCAGTGTATCTTCCAA-TGCCTCATTCTGTTGTCTTCAATATTACCCGTCATATACTCCTCCATTC-AC---CCCAAAAATACAGATTCTGCTCCGATTTATGTCTGAAAATAGGACCCACTTTT
i calJac3.chr4             I 188 I 113
s saiBol1.JH378348            156783 222 -    375362 gatcttcagtctaacgctctcccaactgagctatttcggcTCCCCTGGAATCGCCCTTTCAGCTATTTCTTCAAAATGTAAAAACTGTCATTTGTAGGGTCAATCTATCTTTCAA-TACCTAATTCTGTTGTCTTTAATATTACCCATCATTTACTCATCCATTC-ACTCATCCAAAAATATAGATTCTGCTCCGATTTATGTCTGAAAATAGGACCCAATTTT
i saiBol1.JH378348         I 161 I 29
s otoGar3.GL873742           1482054 197 -   2232465 gatcttcagtctaacgctctcccaactgagctatttcggcTGACATGAAGAGGTTCTTTAAGGCATTCTTTCAAAATATTAAAACTTTCATTTGTAGGGTCAGCCCATATTTCAAGTGTC---TTTTACTTTTTTCAGTATCACTTG-------------------CC-A----AAAAATATGAATTCAACTACTATGTGTATCCGAAAATAGGATCCAATTTT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I

a score=794842.000000
s hg38.chr6_GL000254v2_alt     89157 139 +   4827813 CCCCGGCAAAAGACGGGAAAGAAAAGACGAGACggccgggcacggtggctcacgcctgtaatctcagcattttgcgaagccgtggagggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaa
s panTro5.chr6              29059764 139 + 175400573 CCCCGGCAAAAGACGGGAAAGAAAAGACGAGACggccgggcacggtggctcacgcctgtaatctcagcattttgcgaggccgtggagggtggatcacttgaggtcaggagttcaagaccagcccggccaacatggtgaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29303795 139 + 173848474 CCCCGGCAAAAGACGGGAAAGAAAAGACGAGACggccgggcacggtggctcacgcctgtaatctcagcattttgcgaggccgtggagggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5103866 139 +   6154872 CCCCGGCAAAAGACGGGAAAGAAAAGACGAGACggccgggcacggtggctcacgcctgtaatctcagcattttgcgagaccgtggagcgtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109702 139 + 122973662 CCCCAGCAAAAGACGGGAAAGAAAAGGCGAGACggccgggcacggtggctcacgcctgtaatctcagcattttgcgaggccgtagagggtggatcacttgaggtcaggagttcaagatcagcctggccaacatggtgaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29286332 139 + 172585720 CCCCCGCAAAAGACGGGAAAGAAAAGGCGAGACgaccaggcacggtgactcacgcctgtaatctctccactttgggaggctgtggtgggtggatcacttgaggtcaggagttcaagaccagcctggccaacgtggtgaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28936167 139 - 170955103 CCCCCGCAAAAGACGGGAAAGAAAAGGCGAGACgaccaggcacggtgactcacgcctgtaatctctccactttgggaggctgtggtgggtggatcacttgaggtcaggagttcaagaccagcctggccaacgtggtgaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1914211 139 -   2996164 CCCCCGCAAAAGACGGGAAAGAAAAGGCGAGACgaccaggcacggtgactcacgcctgtaatctctccactttgggaggctgtggtgggtggatcacttgaggtcaggagttcaagaccagcctggccaacgtggtgaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1795639 139 -   2157725 CCCCCGCAAAAGACGGGAAAGAAAAGGCGAGACgaccgggcacggtgactcacgcctgtaatctcagcactttgggaggctgcggtgggtggatcacttgaggtcaggagttcaagatcagcctggccaacgtggtgaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28254109 139 -  71996105 CCCCCGCAAAAGACGGGAAAGAAAAGGCGAGACAAccgggcacggtgactcacgcctgtaatctctgcactttgggaggctgtggtgggtggatcacttgaggtcaggagttcaagaccagcctggccaacgtggtgaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1921944 139 +   2316924 CCCCCGCAAAAGACGGGAAAGAAAAGGCGAGACgaccgggcacggtgactcacacctgtaatctcagcactttgagaggctgcagtgggtggatcacttgaggtcaggagttcaagaccagcctggccaacgtggtgaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1794413 139 -   3067355 CCCCCGCAAAAGACGGGAAAGAAAAGGCGAGACGACAgggcacggtgactcacgcctgtaatctcagcactttgggaggctgtggtggatggatcacttgaggtcaggagttcaagaccagcctggccaacgtggtgaa
i colAng1.NW_012115566v1   C 0 I 13
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            157005  29 -    375362 I
e otoGar3.GL873742           1482251   0 -   2232465 C
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171328743 113 - 171630274 I

a score=5005.000000
s hg38.chr6_GL000254v2_alt     89296 1 +   4827813 a
s panTro5.chr6              29059903 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29303934 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104005 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109841 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29286471 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28936306 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1914350 1 -   2996164 a
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1795778 1 -   2157725 a
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28254248 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1922083 1 +   2316924 a
i manLeu1.NW_012104165v1   C 0 M 760
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            157005 29 -    375362 I
e otoGar3.GL873742           1482251 0 -   2232465 C
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171328743 113 - 171630274 I
e colAng1.NW_012115566v1     1794552 13 -   3067355 I

a score=3321.000000
s hg38.chr6_GL000254v2_alt     89297 1 +   4827813 t
s panTro5.chr6              29059904 1 + 175400573 c
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29303935 1 + 173848474 c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104006 1 +   6154872 c
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109842 1 + 122973662 c
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29286472 1 + 172585720 c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28936307 1 - 170955103 c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1914351 1 -   2996164 c
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1795779 1 -   2157725 c
i cerAty1.NW_012001495v1   C 0 I 11
s chlSab2.chr17             28254249 1 -  71996105 c
i chlSab2.chr17            C 0 I 11
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            157005 29 -    375362 I
e otoGar3.GL873742           1482251 0 -   2232465 C
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171328743 113 - 171630274 I
e colAng1.NW_012115566v1     1794552 13 -   3067355 I
e manLeu1.NW_012104165v1     1922084 760 +   2316924 M

a score=3743.000000
s hg38.chr6_GL000254v2_alt     89298  9 +   4827813 ----cccttcttt
s panTro5.chr6              29059905  9 + 175400573 ----cccttcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29303936  9 + 173848474 ----cccttcttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104007  9 +   6154872 ----cccttcttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109843  9 + 122973662 ----tccttctct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29286473 11 + 172585720 acacgccacct--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28936308 11 - 170955103 acacgccacct--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1914352 11 -   2996164 acacgccacct--
i macNem1.NW_012011356v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            157005 29 -    375362 I
e otoGar3.GL873742           1482251  0 -   2232465 C
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171328743 113 - 171630274 I
e colAng1.NW_012115566v1     1794552 13 -   3067355 I
e manLeu1.NW_012104165v1     1922084 760 +   2316924 M
e chlSab2.chr17             28254250 11 -  71996105 I
e cerAty1.NW_012001495v1     1795780 11 -   2157725 I

a score=274285.000000
s hg38.chr6_GL000254v2_alt     89307 59 +   4827813 acaagaaatataaaaattagccaggagaggtggcgcacgcctgtagtttcagctacttc
s panTro5.chr6              29059914 59 + 175400573 acaagaaatataaaaattagccaggagaggtggcgcacgcctgtagttccagctacttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29303945 59 + 173848474 acaagaaatataaaaattcgccaggagaggtggcgcacgcctgtagttccagctacttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104016 59 +   6154872 acaagaaatataaaaattagctaggagtggtggcgcacgcctgtagttccagctacttc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109852 59 + 122973662 acaagaaatataaaaattagccaggagtggtggcgcacgcctgtagtcccagctacttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29286484 59 + 172585720 acaaaaaatataaaaattagccagaagtggtggcgcacgcctatagtaccagcgacttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28936319 59 - 170955103 acaaaaaatataaaaattagccagaagtggtggcgcacgcctatagtaccagctacttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1914363 59 -   2996164 acaaaaaatatgaaaattagccagaagtggtggcgcacgcctatagtaccagctacttc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1795791 59 -   2157725 acaaaaaatataaaaattagccagaagtggtggcgcacgcctatagtaccagctacttc
i cerAty1.NW_012001495v1   I 11 C 0
s chlSab2.chr17             28254261 59 -  71996105 acaaaaaatataaaaattagccagaagtggtggcgcaggcctatagtaccagctacttc
i chlSab2.chr17            I 11 C 0
s colAng1.NW_012115566v1     1794565 59 -   3067355 acaaaaaatataaaaattagccagaagtggtggcgcacgcctatagtaccagctacttc
i colAng1.NW_012115566v1   I 13 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            157005 29 -    375362 I
e otoGar3.GL873742           1482251  0 -   2232465 C
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171328743 113 - 171630274 I
e manLeu1.NW_012104165v1     1922084 760 +   2316924 M

a score=416419.000000
s hg38.chr6_GL000254v2_alt     89366 113 +   4827813 ggaggctgaggcaggagaatcgcttgaaccagggagttcgaggctgcagtgagccgagatcgcgccactgcact---ccag-cctgggcgaca-gcgagactctgt-ctct----------------------------------aaaaaaaa
s panTro5.chr6              29059973 104 + 175400573 ggaggctgaggcaggagaatcgcttgaaccagggaattcgaggttgcagtgagccgagatcgcgccactgcact---ccag-cctgggcgaca-gcgagactctgt-ctc-------------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304004 104 + 173848474 ggaggctgaggcaggagaatcgcttgaaccagggaattcgaggttgcagtgagccgagatcgctccactgcact---ccag-cctgggcgaca-gcgagactctgt-ctc-------------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104075 117 +   6154872 ggaggctgaggcaggagaatcgcttgaaccacggagttcgaggctgcagtgagccgagatcgcgccactgcact---ccag-cctgggcgaca-gcgagactctgt-ctctaaaa------------------------------aaaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74109911 117 + 122973662 agaggctgaggcaggaaaatcgcttgaaccagggagttcgaagctgcagtgagccgagatcgcgcaactgcact---ccag-cctgggcaaca-gcgagactctgt-ctctaaaa------------------------------aaagaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29286543 134 + 172585720 ggaggctgaggcaggagaatcacttgaaccagggagttcgaggttgcagtgagctgagatcgcaccactgcact---ccag-cctgggcgaca-gtgagactccgt-ctctaaac-------------aaaaaaaagaaaaagaaaaagaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28936378 134 - 170955103 ggaggctgaggcaggagaatcacttgaaccagggagttcgaggttgcagtgagctgagatcgcaccactgcact---ccag-cctgggcgaca-gtgagactccgt-ctctaaac-------------aaaaaaaagaaaaagaaaaagaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1914422 147 -   2996164 ggaggctgaggcaggagaatcacttgaaccagggagttcgaggttgcagtgagctgagatcgcaccactgcact---ccag-cctgggcaaca-gtgagactccgt-ctctaaacaaaaagaaaaaaaaaaaagaaaaaaaagaaaaagaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1795850 129 -   2157725 ggaggctgaggcaggagaatcacttgaaccagggagttcgaggttgccgtgagctgagatcgcaacactgcacttgcccagccctgggcgacaggtgaactgccgtcctctaaac-------------agaaaaaaaaaaaa-----------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28254320 131 -  71996105 ggaggctgaggcaggagaatcacttgaaccagggagttcgaggttgcagtgagctgagatcgcaccactgcact---ccag-cctgggcgaca-gtgagactccgt-ctctaaac----------------aaaaaaaaaaagaaaaaagaaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1794624 113 -   3067355 ggaggctgaggcaggagaatcacttgaaccagggagttcgaggttgcagtgagctgagatcgcaccactgcact---ccag-cctgggcgaca-gtgagactgcgt-ctctaaaa----------------------------------aaaa
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1482251  29 -   2232465 GAAGGCTGAA--------------TGAGCC---------------------GGTTGAGAACGGG-----------------------------------------------------------------------------------------
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            157005  29 -    375362 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171328743 113 - 171630274 I
e manLeu1.NW_012104165v1     1922084 760 +   2316924 M

a score=476933.000000
s hg38.chr6_GL000254v2_alt     89479 100 +   4827813 aaaaaaaaaaaaaaaGGCGAGGAATAGGTCAAATCAG---------CAAGATAGATGCTCCCATGCTTGGTCACCTTGG---------------AAACACCGCTCAGAAAACTAAAGGAAACTA
s panTro5.chr6              29060077  94 + 175400573 --aaaaaaaaaaaaaTGCGAGGAATAGGTCAAATCAG---------GAAGAT----GCTCCCATGCTTGGTCACCTTGG---------------AAACACCGCTCAGAAAACTAAAGGAAACTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304108  94 + 173848474 --taaaaaaaaaaaaGGCGAGGAATAGGTCAAATCAG---------GAAGAT----GCTCCCATGCTTGGTCACCTTGG---------------AAACACCGCTCAGAAAACTAAAGGAAACTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104192  96 +   6154872 aaagaaaaaagaaaaGGCGAGGAATAGGTCAAATCAG---------GAAGAT----GCTCTCATGCTTGGTCACCTTGG---------------AAACACCGCTCAGAAAACTAAAGGAAATTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110028  96 + 122973662 aagaaaaaaaGACAAGGCGAGGAATAGGTCAAATCAG---------GAAGAT----GCTCCCATGCTTGTTCACCATGG---------------AAACACCACTCGGAAAACTAAAGGAAATTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29286677  96 + 172585720 AAGAAGAAAAGGAAAAGCGAGGAATAGGTCAGATCAG---------GAAGAT----GCTCCCATGCTTGGTCACCATGG---------------AAACACTGCTCAGAAAACTAAGGGAAATTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28936512  96 - 170955103 AAGAAGAAAAGGAAAAGCGAGGAATAGGTCAGATCAG---------GAAGAT----GCTCCCATGCTTGGTCACCATGG---------------AAACACTGCTCAGAAAACTAAGGGAAATTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1914569  96 -   2996164 aagaaaaaaaggaaaaGCGAGGAATAGGTCAGATCAG---------GAAGAT----GCTCCCATGCTTGGTCACCATGG---------------AAACACTGCTCAGAAAACTAAGGGAAATTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1795979  90 -   2157725 ------aaaagaaaaaGCGAGGAATAGGTCAGATCAG---------GAAGAT----GCTCCCATGCTTGGTCACCATGG---------------AAACGCTGCTCAGAAAACTAAGGGAAATTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28254451  96 -  71996105 aagaaaaaaagaaaaaGCGAGGAATAGGTCAGATCAG---------GAAGAA----GCTCCCATGCTTGGTCACCATGG---------------AAACACTGCTCAGAAAACTAAGGGAAATTA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1794737  96 -   3067355 aagaaagaaagaaaaaGCGAGGAATAGGTCAGATCAG---------GAAGAT----GCTCCCATGCTTGGTCACCATGG---------------AAACACTGCTCAGAAAACTAAGGGAAATTA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            157034  85 -    375362 AGAAAAAAAGGCAAAGGCAAAGAATAAGTCGAAGCAG---------TAAGGT----GCCCCCCTACAAGGTCA--------------------------CTGCTCAGAAAACTAACGGAATTCA
i saiBol1.JH378348         I 29 I 62
s otoGar3.GL873742           1482280 106 -   2232465 ---TAAAAAAGGGGGGGC--AGAATGGGTAAAAGCAAAATATTCTTGAATAT----GTTTTCATGTTTGGTCATCTCCGGCTGTTTTACGACCCAAATACT--TCAGAAAACTAAGG-------
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171328743 113 - 171630274 I
e manLeu1.NW_012104165v1     1922084 760 +   2316924 M

a score=49874.000000
s hg38.chr6_GL000254v2_alt     89579 10 +   4827813 TCTAAAACTA
s panTro5.chr6              29060171 10 + 175400573 TCTAAAACTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304202 10 + 173848474 TCTAAAACTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104288 10 +   6154872 TCTAAAACTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110124 10 + 122973662 TCTAAAACTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29286773 10 + 172585720 TCTAAAACTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28936608 10 - 170955103 TCTAAAACTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1914665 10 -   2996164 TCTAAAACTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1796069 10 -   2157725 TCTAAAACTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28254547 10 -  71996105 TCTAAAACTA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1794833 10 -   3067355 TCTAAAACTA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1482386  6 -   2232465 ----ACATTC
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            157119 62 -    375362 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171328743 113 - 171630274 I
e manLeu1.NW_012104165v1     1922084 760 +   2316924 M

a score=98018.000000
s hg38.chr6_GL000254v2_alt     89589 18 +   4827813 AAATGAAATTATCTAGAC
s panTro5.chr6              29060181 18 + 175400573 AAATGAAATTATCTAGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304212 18 + 173848474 AAATGAAATTATCTAGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104298 18 +   6154872 AAATGAAATTATCTAGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110134 18 + 122973662 AAATGAAATTATCTAGAc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29286783 18 + 172585720 AAATGAAATTATCTAGAc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28936618 18 - 170955103 AAATGAAATTATCTAGAc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1914675 18 -   2996164 AAATGAAATTATCTAGAc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1796079 18 -   2157725 AAATGAAAGTATCTAGAc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28254557 18 -  71996105 AAATGAAATTATCTAGAc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1794843 18 -   3067355 AAATGAAATTATCCAGAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328856 18 - 171630274 AAAGAATAGTTTCTAGGC
i calJac3.chr4             I 113 C 0
s otoGar3.GL873742           1482392 15 -   2232465 AAGTGAAATTATTCC---
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            157119 62 -    375362 I
e aotNan1.NW_018494050v1      106373 1811 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e manLeu1.NW_012104165v1     1922084 760 +   2316924 M

a score=181764.000000
s hg38.chr6_GL000254v2_alt     89607 25 +   4827813 TTTTCCTTTTCTCTCCTTTTGGCTC
s panTro5.chr6              29060199 25 + 175400573 TTTTCCTTTTCTCTCCTTTTGGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304230 25 + 173848474 TTTTCCCTTTCTCTCCTTTTGGCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104316 25 +   6154872 TTTTCCTTTTCTCTCCTTTTGGCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110152 25 + 122973662 ttttccttttctcttcttttggctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29286801 25 + 172585720 ttttccttttctcttcttttggctc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28936636 25 - 170955103 ttttccttttctcttcttttggctc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1914693 25 -   2996164 ttttccttttctcttcttttggctc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1796097 25 -   2157725 ttttccttttctcttcttttggctc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28254575 25 -  71996105 ttttccttttctcttcttttggctc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1794861 25 -   3067355 Tttttcttttctcttcttttggctc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328874 25 - 171630274 TTTTCCTTTTCTCTTCCCTGGGCTC
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1      108184 25 -    285216 TTTTCCTTTTCTCTTCTTTTGGCTC
i aotNan1.NW_018494050v1   I 1811 C 0
s otoGar3.GL873742           1482407 23 -   2232465 TATTCCGTT--TCTTCTTTCAGTTC
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            157119 62 -    375362 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e manLeu1.NW_012104165v1     1922084 760 +   2316924 M

a score=1012007.000000
s hg38.chr6_GL000254v2_alt     89632 136 +   4827813 TTTTTTGTTTTGTTTTCTGTCTTGCTCTTCAATGACATGGCAAAAAGGAAC-AGAAGATTATTGAACACGTTAACCTGGTAGTAGGTTTATAGCTTCCGACTGAAGAAATCCTGAGCGAGCCAATTCTTTTTCTCTG
s panTro5.chr6              29060224 136 + 175400573 TTTTTTGTTTTGTTTTCTGTCTTGCTCTTCAATGACATGGCAAAAAGGAAC-AGAAGATTATTGAACACGTTAACCTGGTAGTAGGTTTATAGCTTCCGACTGAAGAAATCCTGAGCGAGCCAATTCTTTTTCTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304255 136 + 173848474 TTTTTTGTTTTGTTTTCTGTCTTGCTCTTCAATGACATGGCAAAAAGGAAC-AGAAGATTATTGAACACGTTAACCTGGTAGTAGGTTTATAGCTTCCGACTGAAGAAATCCTGAGCGAGCCAATTCTTTTTCTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104341 136 +   6154872 TTTTTTGTTTTGTTTTCTGTCTTGCTCTTCAATGACATGGCAAAAAGGAAC-AGAAGATTATTGAACACGTTAACCTGGTAGTAGGTTTATAGCTTCCGACTGAAGAAATCCTGAGCGAGCCAATTCTTTTTCTCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110177 136 + 122973662 ttttttgttttgttttctGTCTTGCTCTTCAATGACACAGCAAAAAGGAGC-AGAAGATTATTGAACACGTTAACCTGGTAGTAGGTTTATAGCTTCCGACTGAAGAAATCCTGAGCGAGCCAATTCTTTTTCTCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29286826 136 + 172585720 ttttttgttttgttttctgtcttgttcttCAATGACACGCCAAAAAGGAAC-AGAAGATTATTGGACACGTTAACGTGGTAGTAGGTTTATAGCTTGCAACTGAAGAAATCCTGAGCCAGCCAATTCTTTTTCTCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28936661 136 - 170955103 ttttttgttttgttttctgtcttgttcttCAATGACACGCCAAAAAGGAAC-AGAAGATTATTGGACACGTTAACGTGGTAGTAGGTTTATAGCTTGCAACTGAAGAAATCCTGAGCCAGCCAATTCTTTTTCTCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1914718 136 -   2996164 ttttttgttttgttttctgtcttgttcttCAATGACACGCCAAAAAGGAAC-AGAAGATTATTGGACACGTTAACGTGGTAGTAGGTTTATAGCTTGCAACTGAAGAAATCCTGAGCCAGCCAATTCTTTTTCTCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1796122 136 -   2157725 ttttttgttttgttttctgtcttgttcttCAATGACACGCCAAAAAGGAAC-AGAAGATTATTGGACACGTTAACGTGGTAGTAGGTTTATAGCCTGCAACTGAAGAAATCCTGAGCGAGCCAATTCTTTTTCTCTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28254600 136 -  71996105 ttttttgttttgttttctgtcttgttcttCAATGACACGCCAAAAAGGAAC-AGAAGATTATTGGACACGTTAACGTGGTAGTAGGTTTATAGCTTGCAACTGAAGAAATCCTGAGCAAGCCAATTCTTTTTCTCTG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1794886 136 -   3067355 ttttttgttttgttttctgtcttgttCTTCTATGACACGGCAAAAAGGAAC-AGAAGATTATTGGACACGTTAACGTGGTAGTAGGTTTATAGCTTGCAACTGAAGAAATCCTGAGCGAGCCAATTCTTTTTCTCTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171328899 134 - 171630274 --TTTTTCTTTTTTTAATGTCTTGCTTTTCAACGACACAGCAGAAAGGAAC-AGAGGATTGCTGGTCACGGTAATTTGGTGGCGGGTTTATAGCTTCCGATTAAAGAAATCCTGAGTGAGACGATTCTTCTTCGCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            157181 136 -    375362 tttttttttttttttCCTGTCTTGCTGTTCGACAACACAGCAGAAAGGAAC-AGAGGATTACTGGGCACGGTAATGTGGTGGCGGGTTTATAGCTTCCGATTAAGGAAATCCTGAGTGAGACAATTCTTTTTGGCTA
i saiBol1.JH378348         I 62 C 0
s aotNan1.NW_018494050v1      108209 128 -    285216 --------TTCTTTTTCTGTCTTGCTCTTCAATGACATGGCAAAAAGGAAC-AGAGGATTAGTGGTTGCGTTAATGTGATAATGGGTTTATAGCTTCTGACTGAAGAAATCCTGAGTGAGCCAATTCTTTTTCTCTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482430 124 -   2232465 ------------TGCTTTAACTTTCTCGTCAATAACAGAGCAAACAGGAACTAGAGGATTATTGGTCACTTGCGAGTGACGGCGGGCTTCTGTCTTCGGCATAAAGAAATCCTGAGCAAGCCAGTTATGTTCGCCA-
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e manLeu1.NW_012104165v1     1922084 760 +   2316924 M

a score=29739.000000
s hg38.chr6_GL000254v2_alt     89768 5 +   4827813 TTTCC
s panTro5.chr6              29060360 5 + 175400573 TTTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304391 5 + 173848474 TTTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104477 5 +   6154872 TTTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110313 5 + 122973662 TTTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29286962 5 + 172585720 TTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28936797 5 - 170955103 TTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1914854 5 -   2996164 TTTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1796258 5 -   2157725 TTTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28254736 5 -  71996105 TTTTC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1795022 5 -   3067355 TTTTC
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018494050v1      108337 5 -    285216 TTTTC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1482554 5 -   2232465 TTCCC
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            157317 0 -    375362 C
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171329033 0 - 171630274 C
e manLeu1.NW_012104165v1     1922084 760 +   2316924 M

a score=411234.000000
s hg38.chr6_GL000254v2_alt     89773 56 +   4827813 TTCCTTTTACTGATCTA-GTGCTAACACATCCACCTTAGGTGGTACAGAGAGCCAGG-
s panTro5.chr6              29060365 56 + 175400573 TTCCTTTTACTGATCTA-GTGCTAACACATCCACCTTAGGTGGTACAGAGAGCCAGG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304396 56 + 173848474 TTCCTTTTACTGATCTA-GTGCTAACACATCCACCTTAGGTGGTACAGAGAGCCAGG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104482 56 +   6154872 TTCCTTTTACTGGTCTA-GTGCTAACACATCCACCTTAGGTGTTACAGAGAGCCAGG-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110318 54 + 122973662 TTCCTTTTACCAGTCTA---GCTAACACATCCACCTTAGGTGGTATAGAGACCCAGG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29286967 56 + 172585720 GTCCTTTTACCAGTCTA-GTGCTAACACATCCACCTTAGGTGGTACGGAGACCCAGG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28936802 56 - 170955103 GTCCTTTTACCAGTCTA-GTGCTAACACATCCACCTTAGGTGGTACGGAGACCCAGG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1914859 56 -   2996164 GTCCTTTTACCAGTCTA-GTGCTAACACATCCACCTTAGGTGGTACGGAGACCCAGG-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1796263 56 -   2157725 GTCCTTTTACCAGTCTA-GTGCTAACACATCCTCCTTAGGTGGTACGGAGACCCAGG-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28254741 56 -  71996105 GTCCTTTTACCAGTCTA-GTGCTAACACATCCACCTTAGGTGGTACGGAGACCCAGG-
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1795027 56 -   3067355 GTCCTTTTACCAGTCTA-GTGCTAACACATCCACCTTAGGTGGTACGGAGACCCAGG-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171329033 56 - 171630274 TTCCTTTCACTCATCTG-GTGCTGACACATCCCCCTTGGCTGGTACAGAGACCCAGG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            157317 56 -    375362 TTCCTTTCACTTGTCTG-GTGCTGACACATCCACCCTGGGTAGTACAGAGACCCAGG-
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      108342 56 -    285216 TTCGTTTTACCCGTCTT-GTGCTCACACATGCACCTCGGGTGGTATGGAGACCCAGG-
i aotNan1.NW_018494050v1   C 0 I 725
s otoGar3.GL873742           1482559 58 -   2232465 ATTCTTTTACTTGTCTTTGTCCTGATACGTTCACATTGGGTGATGCGGTGACTCAGAG
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e manLeu1.NW_012104165v1     1922084 760 +   2316924 M

a score=43479.000000
s hg38.chr6_GL000254v2_alt     89829 7 +   4827813 G-GTGGAA
s panTro5.chr6              29060421 7 + 175400573 G-GTGGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304452 7 + 173848474 G-GTGGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104538 7 +   6154872 G-GTGGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110372 7 + 122973662 G-GTGGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29287023 8 + 172585720 GAGTGGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28936858 8 - 170955103 GAGTGGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1914915 8 -   2996164 GAGTGGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1796319 8 -   2157725 GAGTGGAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28254797 8 -  71996105 GAGTGGAA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1795083 8 -   3067355 GAGTGGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171329089 8 - 171630274 GAGTGGAA
i calJac3.chr4             C 0 I 9742
s saiBol1.JH378348            157373 8 -    375362 GAGTGGAA
i saiBol1.JH378348         C 0 I 3
s otoGar3.GL873742           1482617 7 -   2232465 -AGTGGAA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      108398 725 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e manLeu1.NW_012104165v1     1922084 760 +   2316924 M

a score=161704.000000
s hg38.chr6_GL000254v2_alt     89836 28 +   4827813 AAGGCAAGCATATGTTTATTTTAGTGTG
s panTro5.chr6              29060428 28 + 175400573 AAGGCAAGCATATGTTTATTTTAGTGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304459 28 + 173848474 AAGGCAAGCATATGTTTATTTTAGTGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104545 28 +   6154872 AAGGCAAGCATATGTTTATTTTAGTGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110379 28 + 122973662 ATGGCAAGCATATGTTTATTTTAGTGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29287031 28 + 172585720 ACGGCAAGCATATGTTTATTTTAGTGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28936866 28 - 170955103 ACGGCAAGCATATGTTTATTTTAGTGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1914923 28 -   2996164 ACGGCAAGCATATGTTTATTTTAGTGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1796327 28 -   2157725 ACGGCAAGCATATGTTTATTTTAGTGTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28254805 28 -  71996105 ACGGCAAGCATATGTTTATTTTAGTGTG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1795091 28 -   3067355 ACGGCAAATATATGTTTATTTTAGTGTG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            157384 28 -    375362 GAAGCTACAACATGTTTATTTTAGTGTG
i saiBol1.JH378348         I 3 I 4296
s otoGar3.GL873742           1482624 24 -   2232465 ATGGGAAGTA----TCAATTTTAGTGTG
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      108398 725 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171329097 9742 - 171630274 I
e manLeu1.NW_012104165v1     1922084 760 +   2316924 M

a score=16624.000000
s hg38.chr6_GL000254v2_alt     89864 4 +   4827813 ACCA
s panTro5.chr6              29060456 4 + 175400573 ACCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304487 4 + 173848474 ACCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104573 4 +   6154872 ACCG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110407 4 + 122973662 ACCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29287059 4 + 172585720 ACAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28936894 4 - 170955103 ACAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1914951 4 -   2996164 ACAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1796355 4 -   2157725 ACCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28254833 4 -  71996105 ACCA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1795119 4 -   3067355 ACCA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1482648 4 -   2232465 ATCA
i otoGar3.GL873742         C 0 I 2719
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            157412 4296 -    375362 I
e aotNan1.NW_018494050v1      108398 725 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171329097 9742 - 171630274 I
e manLeu1.NW_012104165v1     1922084 760 +   2316924 M

a score=353088.000000
s hg38.chr6_GL000254v2_alt     89868 201 +   4827813 CGTtatatatatatatatatatatatatatatatatatatatatatatatatataCACACACACatataaatatgaaat-----atatataaattaaaaatgtaaatatatt--gttgatatagatattatatataatataaaatatac--------------atgtatctctctc------------------tatatatatatag----------agagagagagagagagagaagattccagcgagt
s panTro5.chr6              29060460 189 + 175400573 CGCAatatatatatatatatatatatatatatatatatatatata--------------cacacacataaatatgaaat-----atatataaattaaaaatgtaaatatattatgttgatgtagatattatatataatataaaatatac--------------atgtatctctctc------------------tatatatatatat----------agagagagagagagagagaagattccagcgagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304491 162 + 173848474 CGCAatatatatatatatatat----------------------------------------acatataaatatgaaat-----atatataaattaaaaatgtaaatatattatgttgatatagatattatatataatataaaatatac--------------atgtatctctctc------------------tatatatatatat----------agagagagagagagagagaaga-tccggcgagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104577 204 +   6154872 CGCAatgtatatatatatacacacaca--------------------------------tacacatatacatatgaaatataaaatatataaattaaaaatgtaaatatattatgttgatatagatattatatataatataaaatatac--------------atgtatctctctctctctctctctctatatatatatatatatatagagagagagagagagagagagagagagaaaattccagcgaat
i gorGor5.CYUI01015250v1   C 0 I 6
s nomLeu3.chr1a             74110411 173 + 122973662 CGCAatatatatata--------------------------------------------tacacatataaatatgaaatataaaatatataaattaaaaatacaaatatattatggtgacataaa---tatatataACATAAAAAACACACACACACACACatatatatatatata------------------tatatatatatag----------agagagagagagagagagaagattccagcga--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29287063 120 + 172585720 CGCAATATatat-----------------------------------------------aatacatataaatatataa------attta-aaattaaaaataaaaatatatta---tgatataaatat--tatataatacaaaa-------------------a------------------------------tacatatataTAT----------------------agagagaagattccagcgaga
i rheMac8.chr4             C 0 I 24
s macFas5.chr4              28936898 120 - 170955103 CGCAatatatat-----------------------------------------------aatacatataaatatataa------attta-aaattaaaaataaaaatatatta---tgatataaatat--tatataatacaaaa-------------------a------------------------------tacatatatataG----------------------AGAGAGAAGATTCCAGCgaga
i macFas5.chr4             C 0 I 24
s macNem1.NW_012011356v1     1914955 120 -   2996164 CGCAatatatat-----------------------------------------------aatacatataaatatataa------attta-aaattaaaaataaaaatatatta---tgatataaatat--tatataatacaaaa-------------------a------------------------------tacatatatataG----------------------AGAGAGAAGATTCCAGCgaga
i macNem1.NW_012011356v1   C 0 I 26
s cerAty1.NW_012001495v1     1796359 120 -   2157725 CGCAatatatac-----------------------------------------------aatacatataaatatataa------attta-aaattaaaaataaaaatatatta---tgatataaatat--tatataatatgaaa-------------------a------------------------------tacatctacatat----------------------aGAGAGAAGATTCCAGCgaga
i cerAty1.NW_012001495v1   C 0 I 11
s chlSab2.chr17             28254837 120 -  71996105 CGCAatatatat-----------------------------------------------aatacatataaatatataa------attta-aaattaaaaataaaaatatatta---tgatataaatat--tatataatataaaa-------------------a------------------------------tacatatatatat----------------------aGAGAGAAGATTCCAGCgaga
i chlSab2.chr17            C 0 I 22
s colAng1.NW_012115566v1     1795123 120 -   3067355 TGCAatatatat-----------------------------------------------aatacatataaatatataa------attta-aaattaaaaatataaatatatta---tgatataaatat--tatataatataaaa-------------------a------------------------------tacatatatataG----------------------AGAGAGAAGATTCCAGCgaga
i colAng1.NW_012115566v1   C 0 I 6
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            157412 4296 -    375362 I
e otoGar3.GL873742           1482652 2719 -   2232465 I
e aotNan1.NW_018494050v1      108398 725 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171329097 9742 - 171630274 I
e manLeu1.NW_012104165v1     1922084 760 +   2316924 M

a score=72476.000000
s hg38.chr6_GL000254v2_alt     90069 15 +   4827813 gagagagagagagag
s panTro5.chr6              29060649 15 + 175400573 gagagagagagagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304653 15 + 173848474 gagagagagagagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104787 15 +   6154872 gagagagagagagag
i gorGor5.CYUI01015250v1   I 6 C 0
s nomLeu3.chr1a             74110584 15 + 122973662 gagagagagagagag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29287207 15 + 172585720 gagagaaagaaagag
i rheMac8.chr4             I 24 C 0
s macFas5.chr4              28937042 15 - 170955103 gagagaaagaaagag
i macFas5.chr4             I 24 C 0
s macNem1.NW_012011356v1     1915101 15 -   2996164 gagagaaagaaagag
i macNem1.NW_012011356v1   I 26 C 0
s cerAty1.NW_012001495v1     1796490  6 -   2157725 ---------agagag
i cerAty1.NW_012001495v1   I 11 C 0
s chlSab2.chr17             28254979 15 -  71996105 gagagagagagagag
i chlSab2.chr17            I 22 C 0
s manLeu1.NW_012104165v1     1922865 15 +   2316924 gagagagagagacag
i manLeu1.NW_012104165v1   M 760 C 0
s colAng1.NW_012115566v1     1795249 15 -   3067355 gagagagagaaagag
i colAng1.NW_012115566v1   I 6 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            157412 4296 -    375362 I
e otoGar3.GL873742           1482652 2719 -   2232465 I
e aotNan1.NW_018494050v1      108398 725 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I
e calJac3.chr4             171329097 9742 - 171630274 I

a score=25662.000000
s hg38.chr6_GL000254v2_alt     90084 3 +   4827813 aga
s panTro5.chr6              29060664 3 + 175400573 aga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304668 3 + 173848474 aga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104802 3 +   6154872 aga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110599 3 + 122973662 aga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29287222 3 + 172585720 aga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28937057 3 - 170955103 aga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1915116 3 -   2996164 aga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1796496 3 -   2157725 aga
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28254994 3 -  71996105 aga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1922880 3 +   2316924 aga
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1795264 3 -   3067355 aga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171338839 3 - 171630274 AGA
i calJac3.chr4             I 9742 C 0
s saiBol1.JH378348            161708 3 -    375362 Aga
i saiBol1.JH378348         I 4296 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1482652 2719 -   2232465 I
e aotNan1.NW_018494050v1      108398 725 -    285216 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I

a score=457718.000000
s hg38.chr6_GL000254v2_alt     90087 64 +   4827813 gacagggtccca-------ctctgccagcctggagtgcagtg--gcaatctcctctcattgcaactttcgcct
s panTro5.chr6              29060667 64 + 175400573 gacagggtccca-------ctctgccagcctggagtgcagtg--gcaatctcctctcattgcaactttcgcct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304671 64 + 173848474 gacagggtccca-------ctctgccagcctggagtgcagtg--gcaatctcctctcattgcaactttcgcct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104805 64 +   6154872 gacagggtccca-------ctctgccaggctggagtgcagtg--gcaatctcctctcattgcaactttcgcct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110602 64 + 122973662 gacagggtccca-------ctctgccaggctggagtgcagtg--gcaatctcctctcgttgcaactttcgcct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29287225 62 + 172585720 gaca--atctca-------ctctgccaggctggagtgcagtg--gcaatctcctctcattgcaactttggcct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28937060 62 - 170955103 gaCa--atctca-------ctctgccaggctggagtgcagtg--gcaatctcctctcattgcaactttggcct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1915119 62 -   2996164 gaCa--gtctca-------ctctgccaggctggagtgcagtg--gcaatctcctctcattgcaactttggcct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1796499 62 -   2157725 gaCa--gtccca-------ctctgccaggctggagtgcagtg--gcaatctcctctcattgcaactttcgcct
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28254997 62 -  71996105 gaCa--gtccca-------ctctgccaggctggagtgcagtg--gcaatctcccctcattgcaacttccgcct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1922883 62 +   2316924 gaCa--gtccca-------ctctgccaggctggagtgcagtg--gcaatctcctctcattgcaactttcgcct
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1795267 62 -   3067355 gaCa--gtccca-------ctctgccaggctggagtgcagtg--gcaatctcctctcattgcaactttcgcct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171338842 73 - 171630274 CACAGGGTTCCACTTctctgttacccaggcaggagtgcggtggtgcaatgtcggctcactgcgacctctgcct
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            161711 73 -    375362 cacagggttccactactctgttacccaggcaggagtgcagtggtgcaatggcggctcacggcaacctctgcct
i saiBol1.JH378348         C 0 I 1
s aotNan1.NW_018494050v1      109123 64 -    285216 gacagggtccca-------gtctggcagcctggagcacagcg--gcaatctcctctcacggcaactttcacct
i aotNan1.NW_018494050v1   I 725 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1482652 2719 -   2232465 I
e cebCap1.NW_016108108v1      143695 19878 -    373274 I

a score=157293.000000
s hg38.chr6_GL000254v2_alt     90151 18 +   4827813 cccggctcaatccgttct
s panTro5.chr6              29060731 18 + 175400573 cccggctcaatccgttct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304735 18 + 173848474 cccggctcaatccgttct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104869 18 +   6154872 cccggctcaatccgttct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110666 18 + 122973662 cccagctcaatcagttct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29287287 18 + 172585720 cccggctcaatcagttct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28937122 18 - 170955103 cccggctcaatcagttct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1915181 18 -   2996164 cccggctcaatcagttct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1796561 18 -   2157725 cccggctcaatcagttct
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28255059 18 -  71996105 cccggctcaatcagttct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1922945 18 +   2316924 cccggctcaatcagttct
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1795329 18 -   3067355 cccggctcaactaattct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171338916 17 - 171630274 cccggctcaatccatcc-
i calJac3.chr4             I 1 I 1
s saiBol1.JH378348            161785 18 -    375362 cccagctcaatccaacct
i saiBol1.JH378348         I 1 I 1
s cebCap1.NW_016108108v1      163573 18 -    373274 cccggctcaatccatcct
i cebCap1.NW_016108108v1   I 19878 I 1
s aotNan1.NW_018494050v1      109187 18 -    285216 cctagctcaaccagccct
i aotNan1.NW_018494050v1   C 0 T 8893
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1482652 2719 -   2232465 I

a score=133455.000000
s hg38.chr6_GL000254v2_alt     90169 12 +   4827813 cccacctcagcc
s panTro5.chr6              29060749 12 + 175400573 cccacctcagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304753 12 + 173848474 cccacctcagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104887 12 +   6154872 cccacctcagcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110684 12 + 122973662 cccacctcagcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29287305 12 + 172585720 cccacctcagcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28937140 12 - 170955103 cccacctcagcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1915199 12 -   2996164 cccacctcagcc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1796579 12 -   2157725 cccacctcagcc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28255077 12 -  71996105 cccatctcagcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1922963 12 +   2316924 cccacctcagcc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1795347 12 -   3067355 tccacctcagcc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171338934 12 - 171630274 cccacctcagcc
i calJac3.chr4             I 1 C 0
s saiBol1.JH378348            161804 12 -    375362 cccacctcagcG
i saiBol1.JH378348         I 1 C 0
s cebCap1.NW_016108108v1      163592 12 -    373274 cccacctcagcc
i cebCap1.NW_016108108v1   I 1 C 0
s aotNan1.NW_018494050v1      100312 12 -    285216 cccacctcagcc
i aotNan1.NW_018494050v1   T 8893 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1482652 2719 -   2232465 I

a score=1149189.000000
s hg38.chr6_GL000254v2_alt     90181 119 +   4827813 tAGAAATTCTTATATCACTTCAAAAGTGTGAAAACATTGGACTCCTCTTGTTAAATAACTTAGAAACAATTTCAGA-GTTTACCGAATTTCAGAAACAATCCTCTCTGGAATGAGGAAAT
s panTro5.chr6              29060761 119 + 175400573 tAGAAATTCTTATATCACTTCAAAAGTGTGAAAACATTGGACTCCTCTTGTTAAATAACTTAGAAACAATTTCAGA-GTTTACCAAATTTCAGAAACAATCCTCTCTGGAATGAGGAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304765 119 + 173848474 tAGAAATTCTTATATCACTTCAAAAGTGTGAAAACATTGGACTCCTCTTGTTAAATAACTTAGAAACAATTTCAGA-GTTTACCAAATTTCAGAAACAATCCTCTCTGGAATGAGGAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5104899 119 +   6154872 tAGAAATTCTTATATCACTTCAAAAGTGTGAAAACACTGGACTCCTCTTGATAAATAACTTAGAAACAATTTCAGA-GTTTACCGAATTTCAGCAACAATCCTCTCTGGAATGAGGAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110696 119 + 122973662 tAGAAATTCTTATATCACTTCAAAAGTGTGAAAACATTGGACTCCTCTCGTTAAATAACTTAGAAACAATTTCAGA-GTTTACCGAATTTCAGAAACAATCCTCTCTGGAATGAGGAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29287317 119 + 172585720 tAGAAATTCTTATATAACTTCAAAAGTGTGAGAACATTGGACTCCTCTTGTTAAATAATTTAGAAACAATTTCAGA-GTTTACCGAATTTCTGAAACAATCCTCTCTGGAATGAGGAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28937152 119 - 170955103 tAGAAATTCTTATATAACTTCAAAAGTGTGAGAACATTGGACTCCTCTTGTTAAATAATTTAGAAACAATTTCAGA-GTTTACCGAATTTCTGAAACAATCCTCTCTGGAATGAGGAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1915211 119 -   2996164 tAGAAATTCTTATATAACTTCAAAAGTGTGAGAACATTGGACTCCTCTTGTTAAATAACCTAGAAACAATTTCAGA-GTTTACCGAATTTCTGAAACAATCCTCTCTGGAATGAGGAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1796591 119 -   2157725 tAGAAATTCTTATATAACTTCAAAAGTGTGAGAACATTGGACTCCTCTTGTTAAATAACTTAGAAACAATTTCAGC-GTTTACCGAATGTCTGAAACAATCCTCTCTGGAATGAGGAAAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28255089 119 -  71996105 tAGAAATTCTTATATAACTTCAAAAGTGTGAGAACATTGGACTCCTCTTGTTAAATAACTTAGAAACAATTTCAGA-GTTTACCGAATTTCTGAAACAATCCTCTCTGGAATGAGGAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1922975 119 +   2316924 tAGAAATTCTTATATAACTTCAAAAGTGTGAGAACATTGGACTCCTCTTGTTAAATAACTTAGAAACAATTTCAGC-GTTTACCGAATGTCTGAAACAATCCTCTCTGGAATGAGGAAAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1795359 119 -   3067355 tAGAAATTCTTATATAACATCAAAAGTGTGAGAACATTGGACTCCTCTTGTTAAATAACTTAGAAACAATTTCAGA-GTTTACCGAATTTCTGAAACAATCCTCTCTGGAATGAGGAAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171338946 115 - 171630274 tAGAAATTCTTAGATGAATTCAAAAGTGCCAAGGCATTGGA-----CTTGTTAAATAATGAGGAAACAATTTCGGACGTTTACAGAGTTTCAGAAACAACTCTCTGTGGAATGAGGAAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            161816 115 -    375362 TAGAAATTCTTATATGCATTCAAAAGTGCCAAAGCATTGGA-----CTTGTTAAACAATGAAGAAACAATTTCAGACATTTACAGAATTTCAGAAACAACTCTCTCTGGAAGGAAGAAAC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      163604 115 -    373274 tAGAAATTCTTATATGAATTCAAAAATGCCAAGGCATTGGA-----CTTGTTAAATAATGAAGAAACAATTTTAGACATTTACAGAATTTCAGAAACAACTCTCTCTGGAATGAGGAAAC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      100324 115 -    285216 tAGAAATTCTTATGTGAATTCAAAAGTGCCAAGGCATTGGA-----CTTGTTAAATAATGAAGAAACAATTTCAGACGTTTACAGAATTTCAGAAACAACTCTCTCTGGAATGAGGACAC
i aotNan1.NW_018494050v1   C 0 I 8896
s otoGar3.GL873742           1485371 107 -   2232465 TAGAAATTCTTATATCAATTAGAAAGTGCCAAGAT-----------TTTATTAAGTAATATAGAAACAGTTTCAGAGGTTTTCAGAATTTCAGAAACAGTCCTCTATGAAATGAGAAT--
i otoGar3.GL873742         I 2719 C 0
e canFam3.chr35             25853030 244 +  26524999 I

a score=1180397.000000
s hg38.chr6_GL000254v2_alt     90300 108 +   4827813 AGCTACAGCCAACAACGACTTGCAAATTGAATTTTAATAAAACCGTCCCTATGTCTGGACAGTTTTCAAACTCAGTCTCCTATTCCGAGAGAGTCCAGGCTTTCTGTT
s panTro5.chr6              29060880 108 + 175400573 AGCTACAGCCAACAACGACTTGCAAATTGAATTTTAATAAAACCGTCCCTATGTCTGGACAGTTTTCAAACTCAGTCTCCTATTCCGAGAGAGTCCAGGCTTTCTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304884 108 + 173848474 AGCTACAGCCAACAACGACTTGCAAATTGAATTTTAATAAAACCGTCCCTATGTCTGGACAGTTTTCAGACTCAGTCTCCTATTCCGAGAGAGTCCAGGCTTTCTGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5105018 108 +   6154872 AGCTACAGCGAACAACGACTTGCAAATTGAATTTTAATAAAACCGTCCCTATGTGTGGACAGTTTTCAAATTCAGTCTCCTATTCCGAGAGAGTCCAGGCTTTCTGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110815 108 + 122973662 AGCTACAGCCAACAACGACTTGCAAATTGAATTTTAATAAAACCGTCCCTATGTCTGGACAGTTTTCAAACTCGGTCTCCTATTCCGAGAGAGTCCAGGCTTTCTGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29287436 108 + 172585720 AACTACAGCCAACAACGACTTGCAAATTGAATTTTAATAAAACCGTCCCTATGTCTGGACAGTTTTCAAACTCGGTCTCCTATTCCGAGAGAGTCCAGGCTTTCTGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28937271 108 - 170955103 AACTACAGCCAACAACGACTTGCAAATTGAATTTTAATAAAACCGTCCCTATGTCTGGACAGTTTTCAAACTCGGTCTCCTATTCCGAGAGAGTCCAGGCTTTCTGTT
i macFas5.chr4             C 0 T 16415
s macNem1.NW_012011356v1     1915330 108 -   2996164 AACTACAGCCAACAACGACTTGCAAATTGAATTTTAATAAAACCGTCCCTATGTCTGGACAGTTTTCAAACTCGGTCTCCTATTCCGAGAGAGTCCAGGCTTTCTGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1796710 108 -   2157725 AACTACAGCCAACAACGACTTGCAAATTGAATTTTAATAAAACCGTCCCTATGTCTGGACAGTTTTCAAACTCGGTCTCCTATTCCGAGAGAGTCCAGGCTTTCTGTT
i cerAty1.NW_012001495v1   C 0 T 52929
s chlSab2.chr17             28255208 108 -  71996105 AACTACAGCCAACAACGACTTGCAAATTGAATTTTAATAAAACCGTCCCTATGTCTGGACAGTTTTCAAACTCGGTCTCCTATTCCGAGAGAGTCCAGGCTTTCTGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1923094 108 +   2316924 AACTACAGCCAACAACGACTTGCAAACTGAATTTTAATAAAACCGTCCCTATGTCTGGACAGTTTTCAAACTCGGTCTCCTATTCCGAGAGAGTCCAGGCTTTCTGTT
i manLeu1.NW_012104165v1   C 0 T 69704
s colAng1.NW_012115566v1     1795478 108 -   3067355 AACTGCAGCCAACAACGACTTGCAAATTGAATTTTAATAAAACCGTCCCTATGTCTGGACAGTTTTCAAACTCGGTCACCTATTCCGAGAGAGTCCAGGCTTTCTGTT
i colAng1.NW_012115566v1   C 0 I 325
s calJac3.chr4             171339061 108 - 171630274 TGCTGCAGCTGGCGACGACTTGCAAACTGAATTTTAATAAAACCGTCCCTATGTTCGGATACTTTACAAACTCAGTCTCCTATTCTGAGAGAGTCCAGGCTTTCCGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            161931 108 -    375362 TGTTGCAGCTGACGATGAGTTGCAAACTGAATTTGAATAAAACCGTCCGTATGTTTGGATAGTTTTCAAACTCAGTCTCCTATTCTGAGAGAGTCCAGCTTTTCAGTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      163719 108 -    373274 TGCTGTAGCTGACGATGACTTGCAAACTGAATTTTAATAAAACCGTCCCTATGTTTGGATAGTTTTCAAACTCAGTCTCCTATTCTGAGAGAGTCCAGGCTTTCAGTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      109335 108 -    285216 AGCTGCGGCCAACGACGACTTGCAAACTGAATTTTAATAAAACCGTCCCTATGTCTGGATAGTTTTCCAACTCGGTCTCCTATTCCGAGAAAGCCCAGGCTTTCTGGT
i aotNan1.NW_018494050v1   I 8896 C 0
s otoGar3.GL873742           1485478 103 -   2232465 AGCTGTGGCCAACTATGACTTACAAAGTGAATTTTGACAAAACCCTCC--ATGCCTGGACAGTTTTCAAACT--GTCTCTTATT-GGAAAGAGTCAAGGTTTTCTGTT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I

a score=16392.000000
s hg38.chr6_GL000254v2_alt     90408 3 +   4827813 TTT
s panTro5.chr6              29060988 3 + 175400573 TTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304992 3 + 173848474 TTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5105126 3 +   6154872 TTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110923 3 + 122973662 TTT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28920964 3 - 170955103 TTT
i macFas5.chr4             T 16415 C 0
s cerAty1.NW_012001495v1     1743889 3 -   2157725 TTT
i cerAty1.NW_012001495v1   T 52929 C 0
s manLeu1.NW_012104165v1     1853498 3 +   2316924 TTT
i manLeu1.NW_012104165v1   T 69704 C 0
s calJac3.chr4             171339169 2 - 171630274 -TT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            162039 2 -    375362 -TT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      163827 2 -    373274 -TT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      109443 2 -    285216 -TT
i aotNan1.NW_018494050v1   C 0 I 794
s otoGar3.GL873742           1485581 3 -   2232465 TTT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e colAng1.NW_012115566v1     1795586 325 -   3067355 I
e chlSab2.chr17             28255316 0 -  71996105 C
e macNem1.NW_012011356v1     1915438 0 -   2996164 C
e rheMac8.chr4              29287544 0 + 172585720 C

a score=110854.000000
s hg38.chr6_GL000254v2_alt     90411 26 +   4827813 AGCCAAAATTTGTTGGGAGGGTCAAT-
s panTro5.chr6              29060991 26 + 175400573 AGCCAAAATTTGTTGGGAGGGTCAAT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29304995 26 + 173848474 AGCCAAAATTTGTTGGGAGGGTCAAT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5105129 26 +   6154872 AGCCAAAATTTGTTGGGAGGGTCAAT-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110926 26 + 122973662 AGCCAAAATTTGTTGGGAGGGTCAAT-
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28920967 26 - 170955103 AGCCAAAATTTGATGGAAGGGTCGAT-
i macFas5.chr4             C 0 I 16386
s cerAty1.NW_012001495v1     1743892 26 -   2157725 AGCCAATATATGGTGGGAGGGTCAAT-
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     1853501 26 +   2316924 AGCCAATATATGGTGGGAGGGTCAAT-
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171339171 26 - 171630274 AGCGAAAATGTGATGGGAGCGTCAAT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            162041 26 -    375362 AGCCAAAATTAGGTGGGAGAGTCAAT-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      163829 26 -    373274 AGCCAAAATTTGGTGGGAGGGTAAAT-
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1485584 27 -   2232465 AGTCAAAATTTGGTGCAAGGCGTAGGC
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      109445 794 -    285216 I
e colAng1.NW_012115566v1     1795586 325 -   3067355 I
e chlSab2.chr17             28255316  0 -  71996105 C
e macNem1.NW_012011356v1     1915438  0 -   2996164 C
e rheMac8.chr4              29287544  0 + 172585720 C

a score=72560.000000
s hg38.chr6_GL000254v2_alt     90437 26 +   4827813 TAAAATAT-TTTTTGAATAATTTCCTC
s panTro5.chr6              29061017 26 + 175400573 TAAAATAT-TTTTTGAATAATTTCCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29305021 26 + 173848474 TAAAATAT-TTTTTGAATAATTTCCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5105155 26 +   6154872 TAAAATAT-TTTTTGAATTATTTCCTC
i gorGor5.CYUI01015250v1   C 0 I 1
s nomLeu3.chr1a             74110952 26 + 122973662 TAGAATAT-TTTTTGAATAATTTCCTC
i nomLeu3.chr1a            C 0 I 1
s cerAty1.NW_012001495v1     1743918 27 -   2157725 TAGGATATGTTTTTCGATGATTTCCTC
i cerAty1.NW_012001495v1   C 0 I 52873
s manLeu1.NW_012104165v1     1853527 27 +   2316924 TAGGATATGTTTTTCGATGATTTCCTC
i manLeu1.NW_012104165v1   C 0 I 69648
s calJac3.chr4             171339197 27 - 171630274 AAGAAAATGGTTTTTGATAATTTCCTT
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            162067 27 -    375362 AAGAAAATGGTTTTTGATAATTTCCTT
i saiBol1.JH378348         C 0 I 1
s cebCap1.NW_016108108v1      163855 27 -    373274 AAGAAAATTGTTTTTGATAATTTCCTT
i cebCap1.NW_016108108v1   C 0 I 1
s otoGar3.GL873742           1485611 24 -   2232465 ---TGTAAGTTTTTGGATGATTTCCTC
i otoGar3.GL873742         C 0 I 4
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      109445 794 -    285216 I
e colAng1.NW_012115566v1     1795586 325 -   3067355 I
e chlSab2.chr17             28255316  0 -  71996105 C
e macNem1.NW_012011356v1     1915438  0 -   2996164 C
e macFas5.chr4              28920993 16386 - 170955103 I
e rheMac8.chr4              29287544  0 + 172585720 C

a score=22751.000000
s hg38.chr6_GL000254v2_alt     90463 8 +   4827813 AAAAATTT-
s panTro5.chr6              29061043 8 + 175400573 AAAAATTT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29305047 8 + 173848474 AAAAATTT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5105182 8 +   6154872 AAAAAATT-
i gorGor5.CYUI01015250v1   I 1 C 0
s nomLeu3.chr1a             74110979 8 + 122973662 AAAAAATT-
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4              29287544 8 + 172585720 AAAAAATT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28937379 8 - 170955103 AAAAAATT-
i macFas5.chr4             I 16386 C 0
s macNem1.NW_012011356v1     1915438 8 -   2996164 AAAAAATT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1796818 8 -   2157725 AAAAAATT-
i cerAty1.NW_012001495v1   I 52873 C 0
s chlSab2.chr17             28255316 8 -  71996105 AAAAAATT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1923202 8 +   2316924 AAAAAATT-
i manLeu1.NW_012104165v1   I 69648 C 0
s calJac3.chr4             171339225 3 - 171630274 AAA------
i calJac3.chr4             I 1 C 0
s saiBol1.JH378348            162095 3 -    375362 TAA------
i saiBol1.JH378348         I 1 C 0
s cebCap1.NW_016108108v1      163883 3 -    373274 AAA------
i cebCap1.NW_016108108v1   I 1 C 0
s otoGar3.GL873742           1485639 8 -   2232465 -AAAATTTT
i otoGar3.GL873742         I 4 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      109445 794 -    285216 I
e colAng1.NW_012115566v1     1795586 325 -   3067355 I

a score=128541.000000
s hg38.chr6_GL000254v2_alt     90471 20 +   4827813 TAGATTCTCTTACAGGC--TTT
s panTro5.chr6              29061051 20 + 175400573 TAGATTCTCTTACAGGC--TTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29305055 20 + 173848474 TAGATTCTGTTACAGGC--TTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5105190 20 +   6154872 TAGATTCTCTTACAGGC--TTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74110987 18 + 122973662 TAGATTCTCTTACAGGC--T--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29287552 20 + 172585720 TAGATTCTCTTACAGGC--TTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28937387 19 - 170955103 TAGATTCTCTTACAGGC---TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1915446 19 -   2996164 TAGATTCTCTTACAGGC---TT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1796826 18 -   2157725 TAGATTCTCTTACAGGC----T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28255324 18 -  71996105 TAGATTCTCTTACAGGC----T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1923210 18 +   2316924 TAGATTCTCTTACAGGC----T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1795911 22 -   3067355 TAGATTCTCTTACAGGCTTTTT
i colAng1.NW_012115566v1   I 325 C 0
s calJac3.chr4             171339228 19 - 171630274 -AAATTATCTCACAGAC--TTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            162098 19 -    375362 -AAATTATATTACAGAC--CTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      163886 19 -    373274 -AAATTATCTTACAGAC--TTT
i cebCap1.NW_016108108v1   C 0 I 65
s otoGar3.GL873742           1485647 17 -   2232465 TAGATTTTCTTACAATC-----
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      109445 794 -    285216 I

a score=412453.000000
s hg38.chr6_GL000254v2_alt     90491 64 +   4827813 TTTCTTTTTTT-----CTCTCCCTCTTGTAAGGCCCGAACCTCCCCAGACAGGAAACAACAT-----TCCTCCA
s panTro5.chr6              29061071 64 + 175400573 TTTCTTTTTTT-----CTCTCCCTCTTGTAAGGCCCGAACCTCCCCAGACAGGAAACAACAT-----TCCTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29305075 64 + 173848474 TTTCTTTTTTT-----CTCTCCCTCTTGTAAGGCCCGAACCTCCCCAGACAGGAAACAACAT-----TCCTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5105210 64 +   6154872 TTTCTTTTTTT-----CTCTCCCTCTTGTAAGGCCCGAACCTCCCCAGACAGGAAACAACAT-----TCCTCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111005 60 + 122973662 ----TTTTTTT-----CTCTACCTCTTGTAAGGCCCAAGCCTCCCCAGACAGGAAACAACAT-----TCCTCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29287572 64 + 172585720 TTTTTTTTCCC-----CTCTCCCTCTTGTAAGGCCTGAGTCTCCCCAGACAGGAGACAACAT-----TCCTCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28937406 64 - 170955103 TTTTTTTTCCC-----CTCTCCCTCTTGTAAGGCCTGAGTCTCCCCAGACAGGAGACAACAT-----TCCTCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1915465 64 -   2996164 TTTTTTTTCCC-----CTCTCCCTCTTGTAAGGCCTGAGTCTCCCCAGACAGGAGACAACAT-----TCCTCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1796844 64 -   2157725 TTTTTTTTTCT-----CGCTCTCTCTTGTAAGGCCTGAGCCTCCCCAGACAGGAAACAACAT-----TCCTCTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28255342 69 -  71996105 TTTTTTTTTTTTTTTCCTCTTCCTCTTGTAAGGCCTGAGCCTCCCCAGGCAGGAGACAACAT-----TCCTCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1923228 64 +   2316924 TTTTTTTTTCT-----CTCTCCCTCTTGTAAGGCCTGAGCCTCCCCAGACAGGAAACAACAT-----TCCTCTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1795933 64 -   3067355 TTTTTTTCTTC-----CTCTCCCTCTTGTAAGGCCTGAGCCTCCCCAGACAGGAAACAACAT-----TCCTCTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339247 63 - 171630274 --TACTTTTTC-----TCCCCT---TTGTACGGTCCGAGCCTTCCCAGACAGGAAACAGAATCCGC-TGCTCTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            162117 67 -    375362 --AATTTTTTT-----TTCTCCTGATTGTACCGTCCGATCATTCCCGGACAGGAAACAGCATCCCTGTACTCTA
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1485664 49 -   2232465 --------------------CCCAGTTGCAATATCTGCACTTTCAGAGACAGGAAACAATAA-----TCCTCTA
i otoGar3.GL873742         C 0 I 5
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      109445 794 -    285216 I
e cebCap1.NW_016108108v1      163905 65 -    373274 I

a score=755737.000000
s hg38.chr6_GL000254v2_alt     90555 102 +   4827813 GGTTTATCCCCGCCGCCTGACGTCTCTCCCC-ATCTGGACGCAGCCTCAGCCTATGCTGCAGAAAACGTTTGAAGTTGAGCATATAGAGAAGGAAAAAAA---AAA---
s panTro5.chr6              29061135 102 + 175400573 GGTTTATCCCCGCCGCCTGACGTCTCTCCCC-ATCTGGACGCAGCCTCAGCCTATGCTGCAGAAAACGTTTGAAGTTGAGCATATAGAGAAGGaaaaaaa---aaa---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29305139 102 + 173848474 GGTTTATCCCCGCCGCCTGACGTCTCTCCCC-ATCTGGACGCAGCCTCAGCCTATGCTGCAGAAAACGTTTGAAGTTGAGCATATAGAGAAGGAAAAAAA---AAA---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5105274 102 +   6154872 GGTTTATCCCCGCCGCCTGACGTCTCTCCCC-ATCTGGACGCAGCCTCAGCCTATGCTGCAGAAAACGTTTGAAGTTGAGCATATAGAGAAGGAAAAAAA---AAA---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111065 102 + 122973662 GGTTTATCCCCGCCTTCTGACGTCTCTCCCC-AGATGGGCTCAGCCTCAGCCTATGTTGCAGAAAACGTTTGAAGTTGAGCATACAGAGAAGGGAAAAAA---AAA---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29287636  98 + 172585720 GGTTTATCCCCGCCGCCTGACTTCTCTCCCT-AGCTGGGCGCAGCCTCAGCCTATGCTGCAG-AAATGTTTGAAGTTGAGCATATGGAGAAGGGGAAAAA---------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28937470  98 - 170955103 GGTTTATCCCCGCGGCCTGACGTCTCTCCCT-AGCTGGGCGCAGCCTCAGCCTATGCTGCAG-AAATGTTTGAAGTTGAGCATATGGAGAAGGGGAAAAA---------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1915529  98 -   2996164 GGTTTATCCCCGCCGCCTGACGTCTCTCCCT-AGCTGGGCGCAGCCTCAGCCTATGCTGCAG-AAATGTTTGAAGTTGAGCATATGGAGAAGGGGAAAAA---------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1796908  98 -   2157725 GGTTTATCCCCGCCGCCTGACGTCTCTCCCT-AGCTGAGCGCAGCCTCAGCCTATGCTGCAG-AAATGTTTGAAGTTGAGCATATAGAGAAGGGAAAAAA---------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28255411  98 -  71996105 GGTTTATCCTCGCCGCCTGACGTCTCTCCCT-AGCTGGGCGCAGCCTCAGCCTATGCTGCAG-AAATGTTTGAAGTTGAGCATATAGAGAAGTGAAAAAA---------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1923292  98 +   2316924 GGTTTATCCCCGCCGCCTGACGTCTCTCCCT-AGCTGAGCGCAGCCTCAGCCTATGCTGCAG-AAATGTTTGAAGTTGAGCATATAGAGAAGGGAAAAAA---------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1795997 100 -   3067355 GGTTTATCC-CGCCGCCTGACGTCTCTCCCT-AGCTGAGCGCAGCCTCAGCCTATGCTGCAG-AAATGTTTGAAGTTGAGCATATAGAGAAGGGAAAAAAAAA------
i colAng1.NW_012115566v1   C 0 T 14973
s calJac3.chr4             171339310  94 - 171630274 GGATGATCG----CGCCTCGCGTGTCTCCCC-CGCTGCGCGCAGCCTCAGCCTCAGCTGCAG-AAAGGCTTGAAGCTGAGCTCATAGAGAAAGGAGAGAA---------
i calJac3.chr4             C 0 I 2
s saiBol1.JH378348            162184  93 -    375362 GGTTTACCG----CGCTTCGCTTCTTTTTCT-AGTTGGGCGCAGCCTCAGCCTCTGCTG-AG-AAATGCTTGAAGTTGAGCACGTAGAGAAAGAAAAGAA---------
i saiBol1.JH378348         C 0 I 2
s cebCap1.NW_016108108v1      163970  94 -    373274 GGTTTATCG----CGCCTCCCGTCTCTTTCT-AGCTGGGCGCAGCCTCAGCCTCTGCTTCAG-AAGTGCTTGAAGTTGAGCATACagagaagaaaaagaa---------
i cebCap1.NW_016108108v1   I 65 I 6
s otoGar3.GL873742           1485718  98 -   2232465 GGTTTTCCGCT--AGCCGCGCATCTCTTCCTCAACTGGACCCAGCCTCAGCTTATGCTGCGA-CAATGCT--GAGTTGAGTACACAGGAGAGGGAAAAAA------AAT
i otoGar3.GL873742         I 5 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      109445 794 -    285216 I

a score=350218.000000
s hg38.chr6_GL000254v2_alt     90657 54 +   4827813 AAA-------GGAAAGTGATGTGGAAATTAAAACAGTGGCTAC--ATATAAATCTCAGCACAG
s panTro5.chr6              29061237 61 + 175400573 aaaaaaaaaaGGAAAGTGATGTGGAAATTAAAACAGTGGCTAC--ATATAAATCTCAGCACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29305241 54 + 173848474 AAA-------GGAAAGTGATGTGGAAATTAAAACAGTGGCTAC--ATATAAATCTCAGCACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5105376 57 +   6154872 AAA----AAAGGAAAGTGATGTGGAAATTAAAACAGTGGCTAC--ATATAAATCTCAGCACAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111167 52 + 122973662 A---------GGAAAGTGATGTGGAAATTAAAACAGTGGCTAC--ATGTAAATCTCAGCACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29287734 56 + 172585720 -------AGTGGAAAGTGATGTGGAAATTAAAACAGTGGTTACATATATAAATCTCAACACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28937568 56 - 170955103 -------AGTGGAAAGTGATGTGGAAATTAAAACAGTGGCTACATATATAAATCTCAACACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1915627 56 -   2996164 -------AGTGGAAAGTGATGTGGAAATTAAAACAGTGGTTACATATATAAATCTCAACACAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1797006 56 -   2157725 -------AGCGGAAAGTGATGTGGAAATTAAAACAGTGGCTATATATATAAATCTCAACACTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28255509 56 -  71996105 -------AGTGGAAAGTGATGTGGAAATTAAAACAGTGGCTACATATATAAATCTCAACACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1923390 56 +   2316924 -------AGCGGAAAGTGATGTGGAAATTAAAACAGTGGCTACATATATAAATCTCAACACAG
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171339406 50 - 171630274 ----------GGAAAGCGATGTGGGGATTAAAAGAGCAGCTGC--ATGTGAACCT-CACACGG
i calJac3.chr4             I 2 C 0
s saiBol1.JH378348            162279 53 -    375362 --------AAGGAAAGTGATGTGGAAATTAAAACAGCAGCTGC--ATGTGAATGTCCACACAG
i saiBol1.JH378348         I 2 C 0
s cebCap1.NW_016108108v1      164070 54 -    373274 -------aaagaaaagTGATGTGGAAATTAAAAGAGCAGCTAC--ATGCGAATCTCCACCCAG
i cebCap1.NW_016108108v1   I 6 C 0
s otoGar3.GL873742           1485816 52 -   2232465 ---------TAGAAACCGATGCGGAAATTAAAATAGTCAATAC--AAATGAATCTCAAAATAG
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      109445 794 -    285216 I
e colAng1.NW_012115566v1     1796097 14973 -   3067355 T

a score=111052.000000
s hg38.chr6_GL000254v2_alt     90711 12 +   4827813 TGCTTAGAATGT
s panTro5.chr6              29061298 12 + 175400573 TGCTTAAAATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29305295 12 + 173848474 TGCTTAAAATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5105433 12 +   6154872 TGCTTAAAATGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111219 12 + 122973662 TGCTTAAAATGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29287790 12 + 172585720 TGCTTAAAATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28937624 12 - 170955103 TGCTTAAAATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1915683 12 -   2996164 TGCTTAAAATGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1797062 12 -   2157725 TGCTTAAAATGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28255565 12 -  71996105 TGCTTAAAATGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1923446 12 +   2316924 TGCTTAAAATGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1781124 12 -   3067355 TGCTTAAAATGT
i colAng1.NW_012115566v1   T 14973 C 0
s calJac3.chr4             171339456 12 - 171630274 TGCTTACAGTGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            162332 12 -    375362 CGCTTGCAATGC
i saiBol1.JH378348         C 0 I 10152
s cebCap1.NW_016108108v1      164124 12 -    373274 TGCTTACAATGC
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1485868 12 -   2232465 TGCTTAAAGTAT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      109445 794 -    285216 I

a score=615949.000000
s hg38.chr6_GL000254v2_alt     90723 71 +   4827813 GTGTAAATGGTTCTAGGAGTGCACTGCACTATTGTGAAAAGTTCATTCAGAAGTAAACGGGAGGGAAGGTG
s panTro5.chr6              29061310 71 + 175400573 GTGTAAATGGTTCTAGGAGTGCACTGCACTATTGTGAAAAGTTCATTCAGAAGTAAACGGGAGGGAAGGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29305307 71 + 173848474 GTGTAAATGGTTCTAGGAGTGCACTGCACTATTGTGAAAAGTTCATTCAGAAGTAAACGGGAGGGAAGGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5105445 71 +   6154872 GTGTAAATGGTTCTAGGAGTGCACTGCACTATTGTGAAAAGTTCATTCAGAAGTAAACGGGAGGGAAGGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111231 71 + 122973662 ATGTAAATGGTTCTAGGAGTGCACTGCACTATTGTGAAAAGTTCATTCAGAAGTAAACGGGAGGGAAGGTg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29287802 71 + 172585720 GTGTAAATGGTTCTAGGAGTGCACTATACTATTGTGAAAAGTTCATTCAGAAGTAAACGGGAGGGAAGGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28937636 71 - 170955103 GTGTAAATGGTTCTAGGAGTGCACTATACTATTGTGAAAAGTTCATTCAGAAGTAAACGGGAGGGAAGGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1915695 71 -   2996164 GTGTAAATGGTTCTAGGAGTGCACTATACTATTGTGAAAAGTTCATTCAGAAGTAAACGGGAGGGAAGGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1797074 71 -   2157725 GTGTAAATGGTTCTAGGAGTGCACTGTACTATTGTGAAAAGTTCATTCGGAAGTAAACGGGAGGGAAGGTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28255577 71 -  71996105 GTGTAAATGGTTCTAGGAGTGCACTGTACTATTGTGAAAAGTTCATTCAGAAGTAAACGGGAGGGAAGGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1923458 71 +   2316924 GTGTAAATGGTTCTAGGAGTGCACTGTACTATTGTGAAAAGTTCATTCAGGAGTAAACGGGAGGGAAGGTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1781136 71 -   3067355 GTGTAAATGGTTCTAGGACTGCTCTGCACTGTTGTGAAAAGTTCATTCAGAAGTAAACGGTAGGGAAGGTG
i colAng1.NW_012115566v1   C 0 I 15130
s calJac3.chr4             171339468 67 - 171630274 GTGCGAACGGCCCTGGGAG---GCTGCGCTCTAGTGAAAAGTTCA-TCAGGAGTAAACGGGGCGGACGGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            172496 69 -    375362 GTGTGAATGGTTCTGGGAG--CGCCGCGCTCTTGTGAAAAGTTCATTCAGAAGTAAACGGGAGGGAAGGCG
i saiBol1.JH378348         I 10152 C 0
s cebCap1.NW_016108108v1      164136 69 -    373274 GTGTGAATGGTTCTGGGAG--CGCTGCGCTCCAGTGAAAAGTTCATTCAGAAGTAAACCGGAGGGAAGGTG
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1485880 60 -   2232465 GCGTAAACGGGACTAGTAGTGCGCGGAACTACCGCTGAAACTTCATTCAGGAGTAAGACG-----------
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      109445 794 -    285216 I

a score=699132.000000
s hg38.chr6_GL000254v2_alt     90794 91 +   4827813 --GAGAGGAGCCGAG-GGCCAGCTGGCGGAGAGAGGGAAGAGGCGGGGTGCGGTGAAGTGGAGAAAGAAACATAAAAAGG--GAGAGGGGTAG--AGG---
s panTro5.chr6              29061381 91 + 175400573 --GAGAGGAGCCGAG-GGCCAGCTGGCGGAGTGAGGGAAGAGGCGGGGTGCGGTGAAGTGGAGAAAGAAACATAAAAAGG--GAGAGGGGTAG--AGG---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29305378 91 + 173848474 --GAGAGGAGCCGAG-GGCCAGCTGGCGGAGTGAGGGAAGAGGCGGGGTGCGGTGAAGTGGAGAAAGAAACATAAAAAGG--GAGAGGGGTAG--AGG---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5105516 91 +   6154872 --GAGAGGAGCCGAG-GGCCAGCTGGCGGAGAGAGGGAAGAGGCGGGGTGCGGTGAAGTGGAGAAAGAAACATAAAAAGG--GAGAGGGGTAG--AGG---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111302 87 + 122973662 --gagaggagccgag-cgccagctggcggagagagggaagaggcgcggtgcggTGAAGTGG----AGAAACACAAAAAGG--GAGAGGGGTAG--AGG---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29287873 91 + 172585720 --GAGAGGAGCCGAG-TGCCAGCTGGTGGAGAGAGGGAAGAGACGGGGTGAGGTGAAGTGGAGAAAGAAACACAAAAAGG--GAGAGGGGCAG--AGG---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28937707 91 - 170955103 --GAGAGGAGCCGAG-TGCCAGCTGGTGGAGAGAGGGAAGAGACGGGGTGAGGTGAAGTGGAGAAAGAAACACAAAAAGG--GAGAGGGGCAG--AGG---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1915766 91 -   2996164 --GAGAGGAGCCGAG-TGCCAGCTGGTGGAGAGAGGGAAGAGACGGGGTGAGGTGAAGTGGAGAAAGAAACACAAAAAGG--GAGAGGGGCAG--AGG---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1797145 91 -   2157725 --GAGAGGAGCCGAG-CGCCCGCTGGTGGAGAGAGGGAAGAGACGGGGTGCGGTGAAGTGGAGAAAGAAACACAAAAAGG--GAGAGAGGTAG--AGG---
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28255648 91 -  71996105 --GAGAGGAGCCGAG-TGCCAGCTGGTGGAGAGAGGGAAGAGACGGGGTGCGGTGAAGTGGAGAAAGAAACACAAAAAGG--GAGAGGGGTAG--AGG---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1923529 91 +   2316924 --GAGAGGAGCCGAG-CGCCCGCTGGTGGAGAGAGGGAAGAGACGGGGTGCGGTGAAGTGGAGAAAGAAACACAAAAAGG--GAGAGGGGTAG--AGG---
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1796337 93 -   3067355 --GAGAGGAGACGAG-CGCCAGCTGGTGGAGAGAGGGAAGAGACGGGGTGCGGTGAAGTGGAGAAAGAAGCACAAAAAGGCAGAGAGGGGTAG--AGG---
i colAng1.NW_012115566v1   I 15130 C 0
s calJac3.chr4             171339535 84 - 171630274 --GAGACCAGCCCGG-AGCCCGCT-GCGGGGAGA--GAAGGGGCG-GGTGCGGGGAAGTGGAGGAAGAAAAACAAAA-----GGGAGGGGTGG--AGG---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            172565 87 -    375362 --GAGACCAGCCGAG-CGCCTGCC-GCGGGGAGA-GGAAGAGGCG-GGCGCGGGGAAGCGGAGGAAGAAAAACAAAA-----GGGAGAGGGGGCCCGG---
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      164205 87 -    373274 --GGGACCAGCCGAG-CGCCTGCC-GCGGGGAGA-GGAAGAGGCG-GGCGCGGGGAAGTGGAGGAAGAAAAACAAAA-GG--GGGAGGGGTGG--AGG---
i cebCap1.NW_016108108v1   C 0 I 609
s otoGar3.GL873742           1485940 97 -   2232465 CAGAGAAGAGGAGGGTCACCAGCTGGTGAGGAGAGACAAAAGGCGGCATGGGGTGAAGAAGAAAAAGAAGAGGAGAAAAG--GAAGTGAGGAG--AAGGCG
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      109445 794 -    285216 I

a score=1944474.000000
s hg38.chr6_GL000254v2_alt     90885 288 +   4827813 ACAAGGAAAAGCATCCTCAAGATTATTAGGATTTGGATGGACGGGATGTTAGAGTGAGTCTAAGCAC-TCACCTCTCCGTCGCTTCTTCTGGATATGAGGGAAGAGAGGT--------------AGGGAGGTAGGCTAGACCAGGAAAGGGACCTGGTT-CTTTTCGTCCAGACTGCCA------CGGCTGCGAGAGCGCCTCGCCGCTCTTTCCATCGCTCGA-TAGACAGGCTAGGCTCT-TTGGAGGAGCAC-GTGATGTTGCGTTTT-TTGTTTGCGGGTTCGGGAACCGCTGATACTGATAGCTTCTGA
s panTro5.chr6              29061472 288 + 175400573 ACAAGGAAAAGCATCCTCAAGATTATTAGGATTTGGATGGACGGGATGTTAGAGTGAGTCTAAGCAC-TCACCTCTCCGTCGCTTCTTCTGGATATGAGGGAAGAGAGGT--------------AGGGAGGTAGGCTAGACCAGGAAAGGGACCTGGTT-CGTTTCGTCCAGACTGCCA------CGGCTGCGAGAGCGCCTCGCCGCTCTTTCCATCGCTCGA-CAGACAGGCTAGGCTCT-TTGGAGGAGCAC-GTGATGTTGCGTTTT-ATGTTTGCGGGTTCGGGAACCGCTGATACTGATAGCTTCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29305469 288 + 173848474 ACAAGGAAAAGCATCCTCAAGATTATTAGGATTTGGATGGACGGGATGTTAGAGTGAGTCTAAGCAC-TCACCTCTCCGTCGCTTCTTCTGGATATGAGGGAAGAGAGGT--------------AGGGAGGTAGGCTAGACCAGGAAAGGGACCTGGTT-CGTTTCGTCCAGACTGCCA------CGGCTGCGAGAGCGCCTCGCCGCTCTTTCCATCGCTCGA-CAGACAGGCTAGGCTCT-TTGGAGGAGCAC-GTGATGTTGCGTTTT-ATGTTTGCGGGTTCGGGAACCGCTGATACTGATAGCTTCTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5105607 293 +   6154872 ACAAGGAAAA-CATCCTCAAGATTATTAGGATTTGGATGGACAGGATGGTAGAGTGAGTCTAAGCAC-TCACCTCTCCGTCGCTTCTTCTGGATATGAGGGAAGAGAGGT--------------AGGGAGGTAGGCTAGACCAGGAAAGGGACCTGGTT-CGTTTCGTCCAGACTGCCACGGCTGCGGCTGCGAGAGCGCCTCGCCACTCTTTCCATCGCTCGA-TAGACAGGCTAGGCTCT-TTGGGGGAGCAC-GTGATGTTGCGTTTT-TTGTTTGCGGGTTCGGGAACCGCTGATACTGATAGCTTCTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111389 301 + 122973662 GCAAGGAAAAGCATCCTCAAGATTATTAGGACTTGGATGGACGGGATGGTAGAGTGAGTCTAAGCAC-GCATCTCTCCGTCGCTTCGTCTGGATATGAGGGAAGAGAGGTTTCTTTTTGTCCCCAGGGAGGTAGGCTCGACCAGGAAGGAGACCTGGTT-CGGTTCGTTCAGACTGCCA------CGGCTTCGAGAGCGCCTCGCCGCTCTTTCCGTCGCTCGA-TAGATAAGCTGGGCTCTGTGGGGGGAGCAC-GTGATGTTGCGATTT--TGTTTGCGGGTCTGGGAACCAATGATAATG-TAGCTTCTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29287964 301 + 172585720 GCAAGGAAAAGCATCCTCAAGATTATTAGGACTTGGATGGACGGGATGGTAGAGTGAGCCTAAGCGT-GCATCTCTCGGTCGCTTCCTCTGGATATGAGGGAAGAGAGGTTCCTTTTTGTCCCTAGGGAAGTAGGCTTGACCAGGAAGGAGACCTAGTT-CGTTTTGTCCAGACTGCCA------CGGCTTCGCGAGCGCCTCGCCGCTCTTTCCGTCGCTCGA-CAGATAGTCTGGGCTTT-TTGGGGGAGTAC-GTGATGTTGCGTTTTTTTGTTTGT-GGTTCTGGAACCGCTGGTACTG-TAGCTTCTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28937798 301 - 170955103 GCAAGGAAAAGCATCCTCAAGATTATTAGGACTTGGATGGACGGGATGGTAGAGTGAGCCTAAGCAT-GCATCTCTCGGTCGCTTCCTCTGGATATGAGGGAAGAGAGGTTCCTTTTTGTCCCTAGGGAAGTAGGCTTGACCAGGAAGGAGACCTAGTT-CGTTTTGTCCAGGCTGCCA------CGGCTTCGCGAGCGCCTCGCCGCTCTTTCCGTCGCTCGA-TAGATAGTCTGGGCTTT-TTGGGGGAGTAC-GTGATGTTGCGTTTTTTTGTTTGT-GGTTCTGGAACCGCTGGTACTG-TAGCTTCTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1915857 302 -   2996164 GCAAGGAAAAGCATCCTCAAGATTATTAGGACTTGGATGGACGGGATGGTAGAGTGAGCCTAAGCAT-GCATCTCTCGGTCGCTTCCTCTGGATATGAGGGAAGAGAGGTTCCTTTTTGTCCCTAGGGAAGTAGGCTTGACCAGGAAGGAGACCTAGTT-CGTTTTGTCCAGACTGCCA------CGGCTTCGCGAGCGCCTCGCCGCTCTTTCCGTCGCTCGA-TAGATAGTCTGGGCTTT-TCGGGGGAGTACGGTGATGTTGCGTTTTTTTGTTTGT-GGTTCTGAAACCGCTGGTACTG-TAGCTTCTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1797236 299 -   2157725 GCAAGGAAAAGCATCCTCAAGATTATTAGGACTTGGATGGACGGGATGGT--AGTGAGCCTAAGCAT-GCATCTCTCCATCGCTTCCTCTTGTTATGAGGGAAGAGAGGTTCCTTTTTGTCCCTAGGGAAGTAGGGTCGACCAGGAAGGAGACCTAGTT-CGTTTTGTCCAGACTGCCA------CGGCTTCGAGAGCGCCTCGCCGCTCTTTCCGTCGCTCGA-TAGATAGTCTGGGCTCT-TTGGGGGAGCAC-GTGATGTTGCGTTTTTTGGTTTGT-GGTTCCGGAACCGCTGATACTG-TAGCTTCTGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28255739 301 -  71996105 GCAAGGAAAAGCATCCTCAAGATTATTAGGACTTGGATGGACGGGATGGTAGAGTGAGCCTAAGCAT-GCTTCTCTCCGTCGCTTCCTCTGGATATGAGGGAAGAGAGGTTCCTTTTTGTCCCTAGGGAAGTAGGCTTGACTAGGAAGGAGACCTAGTT-CGTTTTGTCCAGACTGCCA------CGGCTTCGCGAGCGCCTCGCCGCTCTTGCCGTCGCTCGA-TAGATAGTCTGGGCTCT-TTGGGGGAGCAC-GTGATGTTGCGTTTTTTTGTTTGT-GGTTACGGAACGGCTGATACTG-TAGCTTCTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1923620 299 +   2316924 GCAAGGAAAAGCATCCTCAAGATTATTAGGACTTGGATGGACGGAATGGT--AGTGAGCCTAAGCAT-GCATCTCTCCATCGCTTCCTCTGGATATGAGGGAAGAGAGGTTCCTTTTTGTCCCTAGGGAAGTAGGGTCGACCAGGAAGGAGACCTAGTT-CGTTTTGTCCAGACTGCCA------CGGCTTCGAGAGCGCCTCGCCGCTCTTTCTGTCGCTCGA-TAGATAGTCTGGGCTCT-TTGGGGGAGCAC-GTGATGTTGCGTTTTTTTGTTTGT-GGTTCCGGAACCGCTGATACTG-TAGCTTCTGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1796430 300 -   3067355 GCAAGGAAAGGCATCCTCAAGATTATTAGGACTTGGATGGACGGGAT-GTAGAGTGAGCCTAAGCAT-GCATCTCTCCGTCGCTTCCTCTGGATATGAGGGAAGAGAGGTTCCTTTTTGTCCCTAGGGAAGTAGGCTCGACCAGGAAGGAGACCCAGTT-CGTTTTGTCCAGACTGCCA------CGGCTTCGAGAGCGCCTCGCCGCTATTTCCGTCGCTCGA-TAGATAGGCTGGGCTCT-TTGGGGGAGCAC-GTGTTGTTGCGTTTTTTTGTTTGT-GGTTCCGGAACCACTGATACTG-TAGTTTCTGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339619 278 - 171630274 GC-AGGAAAAGCGTCCTCAAGGTGGTTCGGACTCGGCCGGACGGGATGGCAGCGCGAGTGTGAGCGCCGCGTGTCGCCGTCGCTTC-TCTGGACGGGAGGGAAGAGACGCTCCTTTCTGTCCCTAGGGAGGC-GGCTCGGCCCGGAAGGGG-CCTGGTT-CGCTTGGCGCCGGCTGTCA------GGGCTTCGGGACCGCCT---CGCGCTTTCCGCGGCT----------------GCACT-TTGGGGACGCCC-GTGATGTGGGGTTTT--TATTTTC-GGTCCGGGAACCGGCGATCCTG-GAGCTTCTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            172652 292 -    375362 GC--GGGAAAGCGTCCTCACGGTGATTCGGCCTCGGCTGCACCGGACCGCGGAGCGAGTCTAAGCGC--CCTGTTTCCGCCGCTTC-TCTGGACAGGAGGGAAGAGAGGCTCCTTTTCGTCCCTAGGGAGGT-AGCGCGGCCGGGAAGGGG-CCTGGTT-GGTTTCGCGCGGGCTGTCA------GGGCTTCGAGGCCGCCT-GGCGCTCTTTCCGTGGCTCCA-CACACCGGCTGGGCTCT-TTGGGGACGCGC-GTGATGTTGGGTTTT--TATTTTC-GGTCCAGGAAGCGCTGATACGG-GAGCTTCTGG
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1486037 285 -   2232465 GCAAGGGAA-GCATCCTCATAATCATTAGGATTTGGATGGATCAGGGAGTGGAGTGAGTCTAAGTGCCACGTCTCTCCGTGGTTTCCTCCGGATAGATGGGAGGAGATAATTCTTTTTGCCCCTGGCGAGGTGAGATTGACCAGGAAAAGGGTCGGATTACTTTCTCCCCTGGCTGTAG------CAGATTCAAGAGCTCCTCGCCGCTCTTTCTGTCTCTGGATTAGACAGGCTGAGTACG-TTG----------AT--------GTTTT--TGTTTGT-GGTTCAGGAAGCGCTGGTATTGGTAGCTCCGGA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      109445 794 -    285216 I
e cebCap1.NW_016108108v1      164292 609 -    373274 I

a score=1552007.000000
s hg38.chr6_GL000254v2_alt     91173 178 +   4827813 GGGAGCTGCAGGGATTTCCCGATTTCCTG------AGTGT-CTGTGTTGAGAGTTAAAAGCGGAATCTGCCGACAGCTTCGAGACTGAGCAGGACAGTGGAAACGTCTAATTTTATTAG-----GCTTGAAATGCA----GAAGATGAGAAAGAAAGTTCCCGTTTGTTTGCTCCACATGTTTC----CTTTAGAATG
s panTro5.chr6              29061760 178 + 175400573 GGGAGCTGCAGGGATTTCCCGATTTCCTG------AGTGT-CTGTGTTGAGAGTTAAAAGCGGAATCTGCCGACAGCTTCGAGACTGAGCAGGACAGTGGAAACGTCTAATTTTATTAG-----GCTTGAAATGCA----AAAGATGAGAAAGAAAGTTCCCGTTTGTTTGCTCCACATGTTTC----CTTTAGAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29305757 178 + 173848474 GGGAGCTGCAGGGATTTCCCGATTTCCTG------AGTGT-CTGTGTTGAGAGTTAAAAGCGGAATCTGCCGACAGCTTCGAGACTGAGCAGGACAGTGGAAACGTCTAATTTTATTAG-----GCTTGAAATGCA----AAAGATGAGAAAGAAAGTTTCCGTTTGTTTGCTCCACATGTTTC----CTTTAGAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5105900 178 +   6154872 GGGAGCTGCAGGGATTTCCCGATTTCCTG------AGTGT-CTGTGTTGAGAGTTAAAAGCGGAATCTGCCGACAGCTTCGAGACTGAGCAGGACAGTGGAAACGTCTAATTTTATTAG-----GCTTGAAATGCA----AAAGATGAGAAAGAAAGTTCCCGTTTGTTTGCTCCACATGTTTC----CTTTAGAATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111690 173 + 122973662 GGCAGCTGAAGG--------GATTTCCTG------CGTGC-CTGTGTT--GAGTTAGAAGCGGAATCTGTCGACAGCTTCGAGACTGAGCACGACAGTGGAAACGTCTAATTTTATTAGGCTGTGCTTGAAATGCA----AAAGATGAGAAAGAAAGTTCTTGTTTGTTTGCTCCACATATTTC----CTTTAGAATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29288265 183 + 172585720 GGGAGCTGCAGGGATTTCCCGATTTCCTG------CGTGC-CTGTGTTGAGAGTTAGAAGCGGGATCCGCCGACAGCTTCGAGACTGAGCACGACAGTGGAAACGTCTAATTTTATTAGGCTTTGCTTGAAATGCA----AAAGATGAGAAAGAAAGTTCCCGTTTGCTTGCTCCACATATTTC----CTTTAGAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28938099 183 - 170955103 GGGAGCTGCAGGGATTTCCCGATTTCCTG------CGTGC-CTGTGTTGAGAGTTAGAAGCGGGATCCGCCGACAGCTTCGAGACTGAGCACGACAGTGGAAACGTCTAATTTTATTAGGCTTTGCTTGAAATGCA----AAAGATGAGAAAGAAAGTTCCCGTTTGCTTGCTCCACATATTTC----CTTTAGAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1916159 183 -   2996164 GGGAGCTGCAGGGATTTCCCGATTTCCTG------CGTGC-CTGTGTTGAGAGTTAGAAGCGGGATCCGCCGACAGCTTCGAGACTGAGCACGACAGTGGAAACGTCTAATTTTATTAGGCTTTGCTTGAAATGCA----AAAGATGAGAAAGAAAGTTCCCGTTTGCTTGCTCCACATATTTC----CTTTAGAATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1797535 183 -   2157725 GGGAGCTGCAGGGATTTCCCGATTTCCTG------CGTGC-CTGTGTTGAGAGTTAGAAGCGGGATCCGCCGACAGCTTCGAGACTGAGCACGACAGTGGAAACGTCTAATTTTATTAGGCTTTGCTTGAAATGCA----AAAGATGAGAAAGAAAGTTCCCGTTTGTTTCCTCCACATATTTC----CTTTAGAATG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28256040 183 -  71996105 GGGAGCTGCAGGGATTTCCCGATTTCCTG------CGTGC-CTGTGTTGAGAGTTAGAAGCGGGATCCGCCGACAGCTTCGAGACTGAGCACGACAGTGGAAACGTCTAATTTTATTAGGCTTTGCTTGAAATGCA----AAAGATGAGAAAGAAAGTTCCCGTTCGTTTGCTCCACATATTTC----CTTTAGAATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1923919 183 +   2316924 GGGAGCTGCAGGGATTTCCCGATTTCCTG------CGTGC-CTGTGTTGAGAGTTAGAAGCGGGATCCGCCGACAGCTTCGAGACTGAGCACGACAGTGGAAACGTCTAATTTTATTAGGCTTTGCTTGAAATGCA----AAAGATGAGAAAGAAAGTTCCCGTTTGTTTGCTCCACATATTTC----CTTTAGAATG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1796730 183 -   3067355 GGGAGCTGCAGGGATTTCCCGATTTCCTG------CGTGT-CTGTGTTAAGAGTTAGAAGCGGGATCCGCCGACAGCTTCGAGACTGAGCATGACAGTGGAAACGTCTAATTTTATTACGCTTTGCTTGAAATGCA----AAAGATGAGAAAGAAAGTTCCCGTTTGTTTGCTCCACATATTTC----CTTTAGAATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171339897 189 - 171630274 GGGAGCCGCTGGgatttcccgatttcccgatttcccgCGTGCCGCGTGGAGCGTTAGCCGCGG-ATCTGCCCGCAGCTTCGAGACTGAGCGTGGCCGTGGAAACGCTTCATTGTATTAGCTTTAGCTCCAAATGCA----AACGGTGGGAATGAAAGTTCCCGTTTGTTTGCTCCACGTATTTC----TCCCAGAATG
i calJac3.chr4             C 0 I 3
s saiBol1.JH378348            172944 181 -    375362 GGGAGCCGCAGGGATTTCCCGATTTCCCG------CGTGT-CCGCGTGGAGAGTTAGCCGCGG-ATCCGCCGGCAGCTTCGAGACTGAGCGCGACCGTGGAAACGTCTAATTGTATTAGCTTTTGCTTGAAATGCA----AACGGTGAGAATGAACGTTCCCG-TCGCTTGCTCCACGTATGTG----TCCTAGAATG
i saiBol1.JH378348         C 0 I 3
s aotNan1.NW_018494050v1      110239 182 -    285216 GGGAGCCGCAGGGATTTCCCGATTTCCCG------CGTGC-CCGTGTGGAGACTCAGCCGCGG-ATCTGCCGGCGGCTTCGAGACTGAGCGTGACCGTGGAAACGTCTAATCGTATTAGCTTTTGCTCGAGATGCA----CACGATGAGAATGAAAGTTCCCGTTTGTTTGCTCCACATATTTC----TCCTCGAATG
i aotNan1.NW_018494050v1   I 794 I 7
s otoGar3.GL873742           1486322 182 -   2232465 GCTAGCCACAGCCCGTTCCGGGT---CCG------CGTGC-GGGTGATGAAAGT-GGAAGCCGGATCTACCCGCAGCTTTAAGGTTGAGAACTACGATGGAAA-ATCTAATTTTACCAGGTTTTGCTTGAAATACAAAACAAAAATGAGAAAGAAAGTTTCTGTTTGTTTGCTCCACATATGTCTAATTCTTAG----
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e cebCap1.NW_016108108v1      164292 609 -    373274 I

a score=26422.000000
s hg38.chr6_GL000254v2_alt     91351 5 +   4827813 AAGCC
s panTro5.chr6              29061938 5 + 175400573 AAGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29305935 5 + 173848474 AAGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5106078 5 +   6154872 AAGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111863 5 + 122973662 AAGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29288448 5 + 172585720 AAGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28938282 5 - 170955103 AAGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1916342 5 -   2996164 AAGCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1797718 5 -   2157725 AAGCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28256223 5 -  71996105 AAGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1924102 5 +   2316924 AAGCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1796913 5 -   3067355 AAGCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340089 4 - 171630274 GAGA-
i calJac3.chr4             I 3 C 0
s saiBol1.JH378348            173128 4 -    375362 GAGA-
i saiBol1.JH378348         I 3 C 0
s otoGar3.GL873742           1486504 5 -   2232465 AAGCT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      110421 7 -    285216 I
e cebCap1.NW_016108108v1      164292 609 -    373274 I

a score=2016162.000000
s hg38.chr6_GL000254v2_alt     91356 265 +   4827813 GATTGGAAGTCAACTTCACCCTGAAGAAATTCCTCCTGGCGTTTACAATGAGCTTCTTTACTCCTCAAGTCCAGCTCTTGGCTCAAAAGGGCTCTGCAGGTTGGTACAAAGGCTGCGGAAAGGCGAAGT---CGCGGTACAATCGGTGTTAACTACATGTGCAGCCACCGTCTTCTTAGTCTTATTACAGGTGCAGAGGTAATATAGGTGAATCCCTCACAAGTTGAGTGGGTTGACCTCAAAATTGACTTTAGCGATGGCTTGTGAC
s panTro5.chr6              29061943 265 + 175400573 GATTGAAAGTCAACTTCACCCTGAAGAAATTCCTCCTGGCATTTGCAATGAGCTTCTTTACTCCTCAAGTCCAGCTCTTGGCTCAAAAGGGCTCTGCAGGTTGGTACAAAGGCTGCGGAAAGGCGAAGT---CGCGGTACAATCGGTGTTAACTACATGTGCAGCCACCGTCTTCTTAGTCTTATTACAGGTGCAGAGGTAATATAGGTGAATCCCTCACAAGTTGAGTGGGTTGACCTCAAAATTGACTTTAGCGATGGCTTGTGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29305940 265 + 173848474 GATTGAAAGTCAACTTCACCCTGAAGAAATTCCTCCTGGCGTTTGCAATGAGCTTCTTTACTCCTCAAGTCCAGCTCTTGGCTCAAAAGGGCTCTGCAGGTTGGTACAAAGGCTGCGGAAAGGCGAAGT---CGCGGTACAATCGGTGTTAACTACATGTGCAGCCACCGTCTTCTTAGTCTTATTACAGGTGCAGAGGTAATATAGGTGAATCCCTCACAAGTTGAGTGGGTTGACCTCAAAATTGACTTTAGCGATGGCTTGTGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5106083 265 +   6154872 GATTGAAAGTCAACTTCACCCTGAAGAAATTCCTCCTGGCGTTTGCAATGAGCTTCTTTACTCCTCAAGTCCAGCTCTTGGCTCAAAAGGGCTCTGCAGGTTGGTACAAAGGCTGCGGAAAGGCGAAGT---CGCGGTACAATCGGTGTTAACCACATGTGCAGCCACTGTCTTCTTAGTCTTATTACAGGTGCAGAGGTAATATAGGTGAATCCCTCACAAGTTGAGTGGGTTGACCTCAAAATTGACTTTAGCGATGGCTTGTGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74111868 262 + 122973662 GATTGAAAGTCAGCTTCACCCTGAAGAAACTCCTCCTGGTGTTTGCAATGAGCTTCTTTACTCCTCACGTCCAGCTCTTGGCTCAAAAGGGCTCTGCAGATTGGCACAGCGGCTGCGGAAAGGCGAAGT---CGCGGTACAATCGGTGTTAACTACATGTGCAGCCACCG---TCTTAGTCCTATCATAGGTGCAGAGGTAATACAGGTGAATCCCTCACAAGTCGAGTGGGTTGACCTCAAAATTGACTTTAGCGATGGCTTGTGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29288453 265 + 172585720 AATAGAAAGTCAATTTCACCCTGAAGAAACTCCTCCTGGCGTTTGAAATGAGCTTCTTTACTCCTCACGTCCACCTCTTGGCTCAAAAGGACTCTGCAGATTCGCACAGCGGCTACGGAAAGGCAAAGT---CGCGGTACAACAGGTGTTAACTACGTGTGCAGCCACCGTCTTCTTAGTCCTATTATAGGTGCAGAGGTAATATAGGTGAATCCCTCACAAGTCGAGTGAGTTGACCTCAAAATTGACTTTAGCGATGGCTTGTGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28938287 265 - 170955103 AATAGAAAGTCAATTTCACCCTGAAGAAACTCCTCCTGGCGTTTGAAATGAGCTTCTTTACTCCTCACGTCCACCTCTTGGCTCAAAAGGACTCTGCAGATTCGCACAGCGGCTACGGAAAGGCAAAGT---CGCGGTACAACAGGTGTTAACTACGTGTGCAGCCACCGTCTTCTTAGTCCTATTATAGGTGCAGAGGTAATATAGGTGAATCCCTCACAAGTCGAGTGGGTTGACCTCAAAATTGACTTTAGCGATGGCTTGTGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1916347 265 -   2996164 AATAGAAAGTCAATTTCACCCTGAAGAAACTCCTCCTGGCGTTTGAAATGAGCTTCTTTACTCCTCACGTCCACCTCTTGGCTCAAAAGGACTCTGCAGATTCGCACAGCGGCTACGGAAAGGCAAAGT---CGCGGTACAACAGGTGTTAACTACGTGTGCAGCCACCGCCTTCTTAGTCCTATTATAGGTGCAGAGGTAATATAGGTGAATCCCTCACAAGTCGAGTGGGTTGACCTCAAAATTGACTTTAGCGATGGCTTGTGAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1797723 252 -   2157725 GATAGAAAGTCAATTTCACCCTGAAGAAACTCCTCCTGGCGTTTGAAATGAGCTTCTTTTCTCCTCACGTCCACCTCTTGGCTCAAAATGACTCTGCAGATTCGCACAGCGGCTACGGAAAGGCAAAGT---CGCGGTACAACAG--GTTAACTACGTGTGCAGCCACCGTCTTCTTAGTCCTATTATAGGTGCAGAGGTA--ACAGGTGAATCCCTCACAA---------GTGGACCTCAAAATTGACTTTAGCGATGGCTTGTGAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28256228 265 -  71996105 GATAGAAAGTCAACTTCACCCTGAAGAAACTCCTCCTGGCGTTTGAAATGAGCTTCATTACTCCTCACGTCCACCTCTTGGCTCAAAAGGACTCTGCAGATTCGCACAGCGGCTACGGAAAGGCAAAGT---CGCTGTACACCCGGTGTTAACTACGTGTGCAGCCACCATTTTCTTAGTCCTTTTACAGTTGCAGAGGTAATATAGGTGAATCCCTCACAAGTCGAGTGGGTTGACCTCAAAATTGACTTTAGCTATGGCTTGTGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1924107 252 +   2316924 GATAGAAAGTCAATTTCACCCTGAAGAAACTCCTCCTGGCGTTTGAAATGAGCTTCTTTACTCCTCACGTCCACCTCTTGGCTCAAAAGGACTCTGCAGATTCGCACAGCGGCTACGGAAAGGCAAAGT---TGCCGTACAACAG--GTTAACTACGTGTGCTGCCACCGTCTTCTTAGTCCTATTATAGGTGCAGAGGTA--ACAGGTGAATCCCTCACAA---------GTGGACCTCAAAATTGACTTTAGCGATGGCTTGTGAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1796918 265 -   3067355 GATAGAAAGTCAATTTCACCCTGAAGAAACTCCTCCTGGAGTTTGAAATGAGCTTCTTTACTCCTCACGTCCACCTCTTGGCTCAAAAGAACTCTGCAGATTCGCACAGCGACTACGGAAAGGCAAAGT---CGCAGTACAATAGGTGTTAACTACGTGTGCAGCCACCGTCTTCTTAGTCCTATTATAGGTGCAGAGGTAATATAGGTGAATCCCTCACAAGTCGAGTGGGTTAACCTCAAAATTGACTTTAGCGATGGCTTGTGAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340093 234 - 171630274 GATTAAAAGCCGGCGCCG-CGCGAAGAAA---CTCCTGCCGTTTGCAACGAGCTCCTTTGCTGCTCGCGTCCAGCGCTCGGCTCCAGAGGCCTCTGCAG---------------------GGGCGGAGT-----CGGGGCAGTCGGTGTCAAGTGCGTGTGCAGCCAGCGTCTCCGCGGTCCTAGGACAGGTGCAGAGGCAA-ATAGGGGACCCCGTCCCTAGTCGGGTGGGTTGAGCTC-AGATTGAGTTTAGCGACGCC--GTTAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            173132 256 -    375362 GATTAAAAGTCAGCGTCACCGTGAAGAAA---CTCCTGGCGTTTGCAACGAGCTCCTTTACTGCTCACGTCGCGCGCTCGGCTC--GAGGCCTCTGCAGA--CTGACGGCGGCTGCGGAAAGGCGGCGT---CGCGGGGCAGTCCGTGTAAACTGCGTGTGCAGCCGGCGTCTCCTCAGGCCTGGGACAGGTGCAGAGGCAA-ACAGGGGAACCCCTCAGCAGTCGGGTGGGTTGACCTC-AGATTGGGTTCAGCGACGCCCTGGTAG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      110428 252 -    285216 GATTAAAAGGCAGCGTCGCCCTGAAGAAACTCCTCCTGGCGTTTGCAACGAGCCCCTTTACTGCTCACGTGCAGCGCTCGACTC----------TGCAGAGGTGGATGGCGGCTGCGGAAAGGCGGAGG---CGTGGGGCAATCCGTGCAAACTGCGTGTGCGGCCAGCGGCTCCTCAGTCCTAGGACAGGTGCAGAGGGAA-ATAGGGGAACCCCTCCCTAGTC-GGTGGGTTGACCCC-AGACTGAGTTTAGCGACGCCCTGTGAC
i aotNan1.NW_018494050v1   I 7 C 0
s otoGar3.GL873742           1486509 260 -   2232465 TACTGGAACCCAACTTTTTCCTGAAGAAACTCTTCCTGGCATTTGCAACCACCTTCTTTACTCCTCCCATCCTGTTCTTAACTCAAAAA---TTTGAAG--CCACACTGTGGCTG-GGAAAGGCAGAGTCACCGCAGCACATTCTGTGTTA--CACCTGTGTGGCCCTCTTATTCTAAGTCCTATTACAGGCTCAGAGGCAAGATAGTTGAGTCCCTCACAAGTCGACTGAGTTGACCTCAACATTGACTTTAAGCGTCCCTTGTGAC
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e cebCap1.NW_016108108v1      164292 609 -    373274 I

a score=6122046.000000
s hg38.chr6_GL000254v2_alt     91621 630 +   4827813 CACCTGGTAGGTGGTGGACCATTACAGCGTTTGGAAAATGAGTAAAAGAAAGGATGCA-TACGGAAGCCCCACTAGCTTGCTTGGCTTCTGCAGATGC----AGAGAGAGGTCGTTTTTCTGCCTTCTGGGTGTTGAGTAACTTAATTTTTT--ATC----TTTTGTTTAAATGAAATAGAGCTGAAAAT---------------------------AGAAGGCGATTTCCTTTTAACGAGATA--GTATTGAGATGC-TTGCAGAGTATCCCCGCGTGGA-TTCTGCTTAGCTCTGTGATACCAGCATCAGAAACTGTGCAAAGAGCTCTAATCTGGAGGTGTGGGTTGTTCAGTAGCTTAGAAAGAGGTTATTCCTGGAGAATAAGTGCAGCAGG-TAGAAAAGGATCCATTGGGATTGGGAGAATAAAAGTTCATTCATTATTTTTATTGATGGAAAAC--AAAGAAATGAGCTTTACCCTATACTGATCTTGGTTCCTGGAGTTCCGAGTGCTTGCATCTCAGGGCAGAAACTTCCTTAGAGGACCCAGAGAAATAT--GTTCCCCCTACCAAATGTCAGCTGAAGTGACTGTGATCTTTTTCTCATTTGTCATTATATTTGCCATTTATTGTATTCTTGTAGTTAAATAGTTTACATTAAGTTTTAGAGTTT
s panTro5.chr6              29062208 630 + 175400573 CACCTGGTAGGTGGTGGACCATTACAGCGTTTGGAAAATGAGTAAAAGAAAGGATGCA-TACGGAAGCCCCACTCGCTTGCTTGGCTTCTGCAGATGC----AGAGAGAGGTCGCTTTTCTGCCTTCTGGGTGTTGAGTAACTTAATTTTTT--GTC----TTTTGTTTAAATGAGATAGAGCTGAAAAT---------------------------AGAAGACGATTTCCTTTTAACGAGATA--GTATTGAGATGC-TTGCAGAGTATCCCCGCGTGGA-TTCTGCTTAGCTCTGTGATACCAGCATCAGAAACTGTGCAAAGAGCTCTAATCTGGAGGTGTGGGTTGTTCAGTAGCTTAGAAAGAGGTTATTCCTGGAGAATAAGTGCAGCAGG-TAGAAAAGGATCCATTGGGGTTGGGAGAATAAAAGTTCATTCATTATTTTTATTGATGGAAAAC--AAAGAAATGAGCTTTACCCTATACTGATCTTGGTTCCTGGAGTTCCGAGTGCTTGCATCTCAGGGCAGAAACTTCCTTAGAGGACCCAGAGAAGTAT--GTTCCCCCTACCAAATGTCAGCTGAAGTGACTGTGATCTTTTTCTCATTTGTCATTATATTTGCCATGTATTGTATTCTTGTAGTTAAATAGTTTACATTAAGTTTTAGAGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29306205 630 + 173848474 CACCTGGTAGGTGGTGGACCATTACAGCGTTTGGAAAATGAGTAAAAGAAAGGATGCA-TACGGAAGCCCCACTCGCTTGCTTGGCTTCTGCAGATGC----AGAGAGAGGTCGCTTTTCTGCCTTCTGGGTGTTGAGTAACTTAATTTTTT--ATG----TTTTGTTTAAATGAAATAGAGCTGAAAAT---------------------------AGAAGACGATTTCCTTTTAACGAGATA--GTATTGAGATGC-TTGCAGAGTATCCCCGCGTGGA-TTCTGCTTAGCTCTGTGATACCAGCATCAGAAACTGTGCAAAGAGCTCTAATCTGGAGGTGTGGGTTGTTCAGTAGCTTAGAAAGAGGTTATTCCTGGAGAATAAGTGCAGCAGG-TAGAAAAGGATCCATTGGGATTGGGAGAATAAAAGTTCATTCATTATTTTTATTGATGGAAAAC--AAAGAAATGAGCTTTACCCTATACTGATCTTGGTTCCTGGAGTTCCGAGTGCTTGCATCTCAGGGCAGAAACTTCCTTAGAGGACCCAGAGAAGTAT--GTTCCCCCTACCAAATGTCAGCTGAAGTGACTGTGATCTTTTTCTCATTTGTCATTATATTTGCCATGTATTGTATTCTTGTAGTTAAATAGTTTACATTAAGTTTTAGAGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5106348 629 +   6154872 CACCTGGTAGGTGGTGGACCATTACAGCGTTTGGAAAATGAGTAAAAGAAAGGATGCA-TACGGAAGCCCCACTCGCTTGCTTGGCTTCCGCAGATGT----AGAGAGAGGTCGCTTTTCTGCCTTCTGGGTGTTGAGTAACTTAATTTTTT--ATC----TTTTGTTTAAACGAAATAGAGCTGAAAAT---------------------------AGAAGGCGATTTCCTTTTAACGAGATA--GTATTGAGATGC-TTGCAGAGTATCCCCGCGTGGA-TTCTGCTTAGCTCTGTGATACCAGCATCAGAAACTGTGCAAAGAGCTCTAATCTGGAGGTGTGGGTTGTTCAGTAGTTTAGAAAGAGGTTATTCCTGGAGAATAAGTGCAGCAGG-TAGAAAAGGATCCATTGGGATTGGGAGAATAAAAGTTCATTCATTATTTTTATTGATGGAAAAC--AAAGAAATGAGCTTTACCCTATACTGATCTTGGTTCCTGGAGTTCCGAATGCTTGCATCTCAGGGCAGAAACTTCCTTAGAGGACCCAGAGAAGTAT--GTTCCCCCTACCAAATGTCAACTGAAGTGACTGTGATCTTTTTCTCATTTGTCATTATATTTGCCATTTATTGTATTCTTGTAGTTAAACAGTTTACATTAAGTTTTAGAG-TT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74112130 626 + 122973662 CACCTGATAGGTGGTGGACCGTTACAGCGTTTAGAAAGTGAGTAAAAGAAAGGACGCA-TACGGAAGCCCCACTCGCTCGCTTGGCTTCTGCAGATGC----GGAGAGAGGTCGCTTTTCTGCCTTCTGGGTGTTCAGTAACTTAATTTTTT--ATC----TTTTGTTTAAATGAAATAGAGCTGAAAAT---------------------------AGAAGGAGAATTCCTTTTAACGAGATA--GTATTGAGATGC-TTGCAGAGTATCCCCGCGTGGA-TTCTGCTTAGCCCTGTGATACCAGCATCAGAAACTGTGCAAAGAGCTCTAATCTGGAGGTGTGGGTTGTTCAGTAGCTTAGAAAGAGGTTATTCCTGGAGAATAAGTACATCATG-TAGAAAAGGATCCATTGGGATTGGGAGAATAAAAGTTCATTTATTATTTTTATTTATGGAAAAC--AAAGAAATGAGCTTTACCCTATACTGATCTTGGTTCCTGGAGTTCAGAGTGCTTGCATCTCAGGGCGGAAACTTCCTTAGAGGACCTAGAG----AT--GTTCCCCCTACCAAATGTCAGCTGAAGTGACTGTGATCTTTTTCTCATTTGTCATTATGTTTGCCATTTATTGTATGCTTGTAGTTAAATAGTTTACATTAAGTTTTAGAGTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29288718 632 + 172585720 CACCTGGTAGGTGGTGGACCATTACAGCGTTTAGAAAGTGAATAAAAGAAAGGATGCA-TACGGATG-CCCACTCGCTTACTTGGCTTCTACAGATGC--AGAGAGAGAGATCGCTTTTCTGCCTTCCGGGTGTTTAGTAACTTAATTTTTT--ATC----TTTTGTTCAAATGAAATAGAGCTGAAAAT---------------------------ATAAGGAGAATTCCTTTCAACGAGATA--GTATTGAGATGC-TTGCAGAGTATCCCCTCGTGGATTTCTGCTTAGCCCTGTGATACCAGCATCAGAAACTGTGCAAAGAGCTCTAATCTGGAGGTGTGGGTTGTTCAGTAGCTTAGAAAGAGGTTATTCCTGGAGAATAAGTGCAGCCAG-CAGAAAAGGATCCATTGGGATTGGGAGAATAAAAGTTCATTCATTATTTTTATTTATGGAAAAC--AAAGAAATGAGCTTTACCCTATACTGGTCTTGGTCCCTGGAGTTCAGAGTGCTTGCATCTCAGGGCAGAAACTTCCTTAGAGGACCCAGAGAAGTAT--GTTCCCCCTACCAAATGTCAGCTGAAGTGACTGTGGTCTTTTTGTCATTTGTCATTATGTTTGCCATTTATTGCATGCTTGTAGTTAAATAGTTTACATTAAGTTTTAGAGTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28938552 632 - 170955103 CACCTGGTAGGTGGTGGACCATTACAGCGTTTAGAAAGTGAATAAAAGAAAGGATGCA-TACGGATG-CCCACTCGCTTACTTGGCTTCTACAGATGC--AGAGAGAGAGATCGCTTTTCTGCCTTCCGGGTGTTTAGTAACTTAATTTTTT--ATC----TTTTGTTCAAATGAAATAGAGCTGAAAAT---------------------------ATAAGGAGAATTCCTTTCAACGAGATA--GTATTGAGATGC-TTGCAGAGTATCCCCTCGTGGATTTCTGCTTAGCCCTGTGATACCAGCATCAGAAACTGTGCAAAGAGCTCTAATCTGGAGGTGTGGGTTGTTCAGTAGCTTAGAAAGAGGTTATTCCTGGAGAATAAGTGCAGCCAG-CAGAAAAGGATCCATTGGGATTGGGAGAATAAAAGTTCATTCATTATTTTTATTTATGGAAAAC--AAAGAAATGAGCTTTACCCTATACTGGTCTTGGTCCCTGGAGTTCAGAGTGCTTGCATCTCAGGGCAGAAACTTCCTTAGAGGACCCAGAGAAGTAT--GTTCCCCCTACCAAATGTCAGCTGAAGTGACTGTGGTCTTTTTGTCATTTGTCATTATGTTTGCCATTTATTGTATGCTTGTAGTTAAATAGTTTACATTAAGTTTTAGAGTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1916612 632 -   2996164 CACCTGGTAGGTGGTGGACCACTACAGCGTTTAGAAAGTGAATAAAAGAAAGGATGCA-TACGGATG-CCCACTCGCTTACTTGGCTTCTACAGATGC--AGAGAGAGAGATCGCTTTTCGGCCTTCCGGGTGTTTAGTAACTTAATTTTTT--ATC----TTTTGTTTAAATGAAATAGAGCTGAAAAT---------------------------ATAAGGAGAATTCCTTTCAATGAGATA--GTATTGAGATGC-TTGCAGAGTATCCCCTCGTGGATTTCTGCTTAGCCCTGTGATACCAGCATCAGAAACTGTGCAAAGAGCTCTAATCTGGAGGTGTGGGTTGTTCAGTAGCTTAGAAAGAGGTTATTCCTGGAGAATAAGTGCAGCCAG-CAGAAAAGGATCCATTGGGATTGGGAGAATAAAAGTTCATTCATTATTTTTATTTATGGAAAAC--AAAGAAATGAGCTTTACCCTATACTGGTCTTGGTCCCTGGAGTTCAGAGTGCTTGCATCTCAGGGCAGAAACTTCCTTAGAGGACCCAGAGAAGTAT--GTTCCCCCTACCAAATGTCAGCTGAAGTGACTGTGGTCTTTTTGTCATTTGTCATTATGTTTGCCATTTATTGTATGCTTGTAGTTAAATAGTTTACATTAAGTTTTAGAGTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1797975 634 -   2157725 CACCTGGTAGGTGGTGGACCATCACAGCGTTTAGAAAGTGAATAAAAGAAAGGATGCA-TACGGATG-CCCACTCGCTTACTTGGCTTCTACAGATGCAGAGAGAGAGAGATCGCTTTTCTGCCTTCCGGGTGTTTAGTAACTTAATTTTTT--ATC----TTTTGTTTAAATGAAATAGAGCTGAAAAT---------------------------ATAAGAAGAATTCCTTTCAACGAGATA--GTATTGAGATGC-TTGCAGAGTATCCCCGCGTGGATTTCTGCTTAGCCCTGTGATACCAGCATCAGAAACTGTGCAAAGAACTCTAATCTGGAGGTGTGGGTTGTTCAGTAGCTTAGAAAGAGGTTATTCCTGGAGAATAAGTGCAGCCAG-TAGAAAAGGATCCATTGGGATTGGGAGAATAAAAGTTCATTCATTATTTTTATTTATGGAAAAC--AAAGAAATGAGCTTTACCCTATACTGGTCTTGGTCCCTGGAGTTCAGAGTGCTTGCATCTCAGGGCAGAAACTTCCTCAGAGGACCCAGAGAAGTAT--GTTCCCCCTACCAAATGTCAGCTGAAGGGACTGTGGTCTTTTTGTCATTTGTCATTATGTTTGCCATTTATTGTATGCTTGTAGTTAAATAGTTTACATTAAGTTTTAGAGTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28256493 631 -  71996105 CACCTGGCAGGTGGTGGACCATTACAGCGTTTAGAAAGTGAATAAAAGAAAGGATGCA-TA-GGATG-CCCACTCGCTTACTTGGCTTCTACAGATGC--AGAGAGAGAGATCGCTTTTCTGCCTTCCGGGTGTTTAGTAACTTAATTTTTT--ATC----TTTTGTTTAAATGAAATACAGCTGAAAAT---------------------------AAAAGGAAAATTCCTTTCAACGAGATA--GTATTGAGATGC-TTGCAGAGTATCCCCTCGTGGATTTCTGCTTAGCCCTGTGATACCAGCATCAGAAACTGTGCAAAGAGCTCTAATCTGGAGGTGTGGGTTGTTCAGTAGCTTAGAAAGAGGTTATTCCTGGAGAATAAGTGCAGCCAG-TAGAAAAGGATCCATTGGGATTGGGAGAATAAAAGTTCATTCATTATTTTTATTTATGGAAAAC--AAGGAAATGAGCCTTACCCTATACTGGTCTTGGTCCCTGGAGTTCAGAGTGCTTGCATCTCAGGGCAGAAACTTCCTTAGAGGACCCAGAGAAGTAT--GTTCCCCCTACCAAATGTCAGCTGAAGTGACTGTGGTCTTTTTGTCATTTGTCATTATGTTTGCCACTTATTGTATGCTTGTAGTTAAATAGTTTACATTAAGTTTTAGAGTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1924359 632 +   2316924 CATCTGGTAGGTGGTGGACCATTACAGTGTTTAGAAAGTGAATAAAAGAAAGGATGCA-TACGGATG-CCCACTCGCTTACTTGGCTTCTACAGATGC--AGAGAGAGAGATCGCTTTTCTGCCTTCTGGGTGTTTAGTAACTTAATTTTTT--ATC----TTTTGTTTAAATGAAATACAGCTGAAAAT---------------------------ATAAGGAGAATTCCTTTCAACGAGATA--GTATTGAGATGC-TTGCAGAGTATCCCCGCGTGGATTTCTGCTTAGCCCTGTGATACCAGCATCAGAAACTGTGCAAAGAGCTCTAATCTGGAGGTGTGGGTTGTTCAGTAGCTTAGAAAGAGGTTATTCCTGGAGAATAAGTGCAGCCAG-TAGAAAAGGATCCATTGGGATTGGGAGAATAAAAGTTCATTCATTATTTTTATTTATGGAAAAC--AAAGAAATGAGCTTTACCCTATACTGGTCTTGGTCCCTGGAGTTCAGAGTGCTTGCATCTCAGGGCAGAAACTTCCTCAGAGGACCCAGAGAAGTAT--GTTCCCCCTACCAAATGTCAGCTGGAGGGACTGTGGTCTTTTTGTCATTTGTCATTATGTTTGCCATTTATTGTATGCTTGTAGTTAAATAGTTTACATTAAGTTTTAGAGTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1797183 629 -   3067355 CACCTAGTAGGTGGTGGACCATTACAGCGTTTAGAAAGTGAGTAAAAGAAAGGATGCA-CACGGATG-CCCACTCGCTTACTTGGCTTCTACAGATGC--AGAGAGAGAGATCGCTTTTCTGCCTTCCGGGTGTTTAGTAACTTAATTTTTT--ATC----TTTTGTTTAAATGAAATAGAGCTGAAAAT---------------------------AC---GAGAATTCCTTTCAACGAGATA--GTATTGAGATGC-TTGCAGAGTATCCCCGCGTGGATTTCTGCTTAGCCCTGTGATACCAGCATCAGAAACTGTGCAAAGAGCTCTAATCTGGAGGTGTGGGTTGTTCAGTAGCTTAGAAAGAGGTTATTCCTGGAGAATAAGTATAGCCAG-TAGAAAAGGATCCATTGGGATTGGGAGAATAAAATTTCATTCATTATTTTTATTTATGGAAAAC--AAAGAAATGAGCTTTATCCTATACTGGTCTTGGTCCCTGGAGTTCAGAGTGCTTGCATCTCAGGGCAGAAACTTCCTTAGAGGACCCAGAGAAGTAT--GTTCCCCCTACCAAATGTCAGCTGAAGTGACTGTGGTCTTTTTGTCATTTGTCATTATGCTTGCCTTTTATTGTATGCTTGTAGTTAAATAGTTTACATTAAGTTTTAGAGTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171340327 646 - 171630274 CCCCTGGCAGGCGGTGGA-AGTTACAGCGTTTAGAACGTGAGTGAAAGAGAGGATGC--TACGGAAG-CCCACCCGCTTGCTTGGCTTCTGCAGATGG------AGAGAGGTCGCTTTTCTGCCTTCTGGGCGTTTACTAACTTATTTTTTAAAATC----TTTTGTTTTAATGAAATAGCTCTGAAAATTTGTTTAAATAAAATAGCTCTGAAAATAGAAGGAGATTTTATTTTAACAAGATA--GTATTAGGATGCGTTGCAGAGTATCCCCGGGAGGATTTCTGCTTAGCGCTGTGATACCAGGATGA-AAACTGTGCAAAGAGCTCTAATCTGGGGGTGCAGGTTGTTCACTAGCCTAGAAGCAGGTTATTCCTGGAGAATAAGTGCGGCAGG-TAGAAAAGGGTCCATCGGGATTGGGAGAATAAAAGTTCATTCGTTGTATTTATTTATGGAAAAC--AAAGAAATGAGCTTTCCCCTATGCTGATCTTGGTCCCGGGAGTCCA-AGTGCTAGCACCTCGGGACAGAAAGTTCCTTAGAGAACTCAGAGAAGTGC--TTTCCCC--------TTTCAGCGGAAGCAACTGTGGTCTTTTCCTCATTTGTCATTATGGTTGTCATTTATCGTATGCTTGTAGTTAAATAGTTTACACTAAGTTTTAGAGTTT
i calJac3.chr4             C 0 T 21057
s saiBol1.JH378348            173388 624 -    375362 CGCCTGGCAGGCGGTGGA-CGTTTCCGCGTTTAGAAAGTGAGT--AAAAGAGGATGCG-TACGGAAG-CCCACCCGCGTGCTTGGCTTCTGCAGATGG------AGAGAGGTCGCTTTTCTGCCTTCTGGGTGTTTACTAACTTATTTTAAAAAATA----TGTTGTTTAAATGAAATAGCGCTGAAAAT------------------------------AGGAGATTTTATTTTAACAAGATA--GTATTAAGATGGGTTGCAGAGTATCCCCGGGAGGATTTCTGCTAAGCACTGTGATACCAGAATGA-AAACTGTGCAAAGAGCTCTAATCTGGAGGTGTAGATTGTTCACTGGCCTAGAAGCAGGTTATTCCTGTAGAATAAGTGCAACAGG-TAGAAAAGCATCCTTTGGGATTGGGAGAATAAAAGTTCATTCATCATATTCATTTACGGAAAAC--AAAGAAATGAGCTTTCCCCTATGCTGATCTTGGTCCCGGGAGGCCAGAGTGCTAGCACCTCAGGACAGAACGTTCCTTAGAGAACTCAGAGAAGTAG--TTTCCCCCTATCATGTTTCAGCGGAAGCAACTGTGAGCTTTTCCTCATTTGTCATTATGGTTGTCATTTATCCTATGCTTGTAGTTAAATAGTTTACACTAAGTTTTAGAGTTT
i saiBol1.JH378348         C 0 T 25603
s cebCap1.NW_016108108v1      164901 618 -    373274 CACCTGGCAGGCGGTGGA-CGTTACCGCGTTTAGAAAGTGAGT--AAAAGGGGATGCG-GACGGAAG-CCCACCCGCTTGCTTGGCTTCTGCAGATGG------ACAGAGGTCGCTTTTCTGCCTTCTGGGTGCTTACTAACTTATTTTTAAAAATC----TTTTGTTTAAATGAAATAGCGCTGAAAAT------------------------------AGGAGATTTTATTTTAACAAGATA--GTATTAAGATGGGTTGCAGAGTATCCCCGGGAGGATATCTGCTTAGCACTGTGATCCCAGAATGA-AAACTGTGCAAAGAGCTCTAATCTGGAGGTGTAGGTTGTTCACTGGCCTAGAAGCAGGTTATTCCTGGAGAATACGTGCAGCAGG-TAGAAAAGGATCCTTTGGGATTGGGAGAATAAAAGTTTATTCATTGTATTTATTTACGGAAAAC--AAAGAAATGAGCTTTCCCCTATGCTGATCTTGGTCCTGGGAATCCAGAGTGCTAGCACCTCAGGACAGAAAGTTCCTTAGAGAACTC--AGAAGTAC--TTTCCCCCTATCATGTTTCAGGGGAAGCAACTGTGATCTTTTCCTCATTTGTCATTATGGTTGTCATTTATCGTATGCTTG----TAAATAGTTTACACTAAGTTTTAGAGTTT
i cebCap1.NW_016108108v1   I 609 T 15156
s aotNan1.NW_018494050v1      110680 616 -    285216 CACCTGGCAGGCGGTGGA-CGTTACAGCGTTTAGAAAGTGAGCAAAAGAGAGGACGCC-TTCGGAAG-CCCACCCTCTTGCTTGGCTTCTGCAGATGG------AGAGAGGTCGCTTTTCTGCCTTCTGGGTGTTTACTAACTTATTTTTTTAAATC----TTTTGTTTAAATGAAATAGCTCTGAAAAT---------------------------AGAAGGAGATTTTATTTTAACAAGATA--GTAGTAAGATGCGTTGCAGGGTATCCCCGGGAGGATTTCTGCTTAGCGCTGTGATACCAGAATGA-AAACTGTGCAAAGAGCTCTAATCTGGAGGTGTAGGTTGTTCACTAGCCTAGAAGCAGGTTATTGCTGGAGAACAAGTGCAGCAGG-TAGAAAAGGATCCATCGGGATTGGGGGAATAAAAGTTCATTCATTATATTCATTTATGGAAAAC--AAAGAAATTAGCTTTCCCCTATGCTGATCTTGGTCCCGGGAGGCCAGAGCGCTAGAACCTCAGTACAGAAAGTTCCTTCCAGAACTCAG---AGTAC--TTTCCCC--------TTTCAGCGGAAGCAACTGTGATCTTTTCCTCATTTATCA--ATGGTTGTCATTTATTGTATGCTTGTAGTTACATAGTTTACACTAAGTTTTAGAGTTT
i aotNan1.NW_018494050v1   C 0 T 23052
s otoGar3.GL873742           1486769 564 -   2232465 CACCTGGTGGACAGTGGACAGTTACAACTTTT------TAAGAAAAAGAGAGGATACATTATGGAAG-CCCTTTGGGTTGCTTAGCTTCTACAAATGA----AGAAAAAGATGGCTTTTCTGTTTTCTG-----------------TCCTCC--ACCCCCGCTTTGGTGGAAGGAAATAGGACTGGAAAT---------------------------AAAAAGGGGGGTTGTTTAAAAAACAAAAGATATTAAGATGC-TTGCGGAGTATCCTATTGTGGAGTTCTCCTTA-CACTGTGATAGCAGAATCTCAAAC--TGCAAGCAGTTCTGATCTGGAGACA-GGGGCGTTCAATAGTTCAGAAGAAAGATATTTCTGGAAAGTAAGTAAAGTGAGCTTTAAAAAACTTCTCTGGGATTGAGAGAATAAGAGTTCATTGTTTATTTTT----AAGAAAAACAAAAAAAAATGAGCTTTGCTGTAGACTGAACTTG----------------------CCATTTCAGATCAGACACTTCCTTAGAAGACCCAGAGAAGTACTATTTCCCTTTACCAAATTTCAGCGGAAGTGACTGCCGTCT-------------------------CATTTGTCCTATGTTTGTAGTTAAATTGTTTATGTTAAGCTTCAGAGTTT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I

a score=655158.000000
s hg38.chr6_GL000254v2_alt     92251 69 +   4827813 GTGGGTTTCTAATGGAAAAAGTGACCACCAGCA-CATCA-----GGTCCTCAGCCACTGGCAGTGAAATCTTTTA
s panTro5.chr6              29062838 69 + 175400573 GTGGGTTTCTAATGGAAAAAGTGACCACCAGCA-CATCA-----GGTCCTCAGCCACCGGCAGTGAAATCTTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29306835 69 + 173848474 GTGGGTTTCTAATGGAAAAAGTGACCACCAGCA-CATCA-----GGTCCTCAGCCACCGGCAGTGAAATCTTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5106977 69 +   6154872 GTGGGTTTCTAACGGAAAAAGTGACCACCAGCA-CATCA-----GGTCCTCAGCCACTGGCAGTGAAATCTTTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74112756 68 + 122973662 GTGGGTTTCCAATGGAAAAAGTGACCACCAGCA-CATCA------GTCCTCAGCCACTGGCAGTGAAATCTTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29289350 69 + 172585720 GTGGGTTTCTAATGGAAATAGTGACCACCAGCA-TATCA-----GGTCCTCAGCCACTGGCAGTGAAATTGTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28939184 69 - 170955103 GTGGGTTTCTAATGGAAATAGTGACCACCAGCA-TATCA-----GGTCCTCAGCCACTGGCAGTGAAATCGTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1917244 69 -   2996164 GTGGGTTTCTAATGGAAATAGTGACCACCAGCA-TATCA-----GGTCCTCAGCCACTGGCAGTGAAATCGTTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1798609 70 -   2157725 GTGGGTTTCTAATGGAAAGAGTGACCACCAGCATTATCA-----GGTCCTCAGCCACTGGCAGTGAAATCGTTTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28257124 69 -  71996105 GTGGGTTTCTAATGGAAATAGTGACCACCAGCA-TATCA-----GGTCCTCAGCCACTGGCAGTGAAATCGTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1924991 69 +   2316924 CTGGGTTTCTAATGGAAATAGTGACCACCAGCA-TATCA-----GGTCCTCAGCCACTGGCAGTGAAATCGTTTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1797812 69 -   3067355 GTGGGTTTCTAATGGAAATAGTGACCACCAGCG-TATCA-----GGTCCTCAGCCACTGGCAGTGAAATCGTTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171319916 74 - 171630274 GTGGGTCTCTAGTGGAAAACGTGACCACCAGTG-CATCGCCAGCAATCATTAACCACTGGCAGTGGAATCCTTTA
i calJac3.chr4             T 21057 I 21047
s saiBol1.JH378348            148409 74 -    375362 GTGAGTCTCTAGTGGAAAATGTGACCACCAGCG-CATCGCCAGCAATCATCAACCACTGGCAGTGGAATCTTTTT
i saiBol1.JH378348         T 25603 C 0
s cebCap1.NW_016108108v1      150363 74 -    373274 GTTGGTCTCTAGTGGAAAATGTGACCACCAGCG-CATCGCCAGCAATCATCAACCACTGGCAGTGGAATCTTTTA
i cebCap1.NW_016108108v1   T 15156 C 0
s aotNan1.NW_018494050v1       88244 74 -    285216 GTGGGTCTCTAGGGGGAAATGTGACAGCCAGCG-CATCGCCAGCAATCACCAGCCACTGGCAGTGGAATCCTTTA
i aotNan1.NW_018494050v1   T 23052 C 0
s otoGar3.GL873742           1487333 66 -   2232465 GTGGGTCTCTGACAGAAAAAGTAACCATCACCA-CATCA-----AACTGTCAACCACTGGCAGCGAAATGGA---
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I

a score=283988.000000
s hg38.chr6_GL000254v2_alt     92320 31 +   4827813 GTGAAAGCTTGTAG----GGCTTCTGCAACCTGGG
s panTro5.chr6              29062907 31 + 175400573 GTGAAAGCTTGTAG----GGCTTCTGCAACCTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29306904 31 + 173848474 GTGAAAGCTTGTAG----GGCTTCTGCAACCTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5107046 31 +   6154872 GTGAAAGCTTGTAG----GGCTTCTGCAACCTGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74112824 31 + 122973662 GTGAAAGCTTGTAG----GGCTTCTGCAACCTGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29289419 31 + 172585720 GTGAAAGCTTGTAG----GGCTTCTGCAACCTTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28939253 31 - 170955103 GTGAAAGCTTGTAG----GGCTTCTGCAACCTTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1917313 31 -   2996164 GTGAAAGCTTGTAG----GGCTTCTGCAACCTTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1798679 31 -   2157725 GTGAAAGCTTGTAG----GGCTTCTGCAACCTTGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28257193 31 -  71996105 GTGAAAGCTTGTAG----GGCTTCTGCAACCTTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1925060 31 +   2316924 GTGAAAGCTTGTAG----GGCTTCTGCAATCTTGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1797881 31 -   3067355 GTGAAAGCTTGTAG----GGCTTCTGAAACCTTGT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            148483 31 -    375362 GTGAAAGCTTGTAG----GGCTTTTGCGACCTGGG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      150437 31 -    373274 GTGAAAGCTTATAG----GGCTTTTGCAACCTGGG
i cebCap1.NW_016108108v1   C 0 I 15123
s aotNan1.NW_018494050v1       88318 31 -    285216 GTGAAAGCTTGTAG----GGCTTTTGCAACCTGGG
i aotNan1.NW_018494050v1   C 0 I 23019
s otoGar3.GL873742           1487399 34 -   2232465 ATGAAAGATT-TAGTGACAGTTTCTGCAAGCAGGT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e calJac3.chr4             171319990 21047 - 171630274 I

a score=52255.000000
s hg38.chr6_GL000254v2_alt     92351 10 +   4827813 TTAGAAGAAG
s panTro5.chr6              29062938 10 + 175400573 TTAGAAGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29306935 10 + 173848474 TTAGAAGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5107077 10 +   6154872 TTAGAAGAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74112855 10 + 122973662 TGAGAAGAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29289450 10 + 172585720 TTAGAAGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28939284 10 - 170955103 TTAGAAGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1917344 10 -   2996164 TTAGAAGAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1798710 10 -   2157725 TTAGAAGAAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28257224 10 -  71996105 TTAGAAGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1925091 10 +   2316924 TTAGAAGAAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1797912  7 -   3067355 TT---AGAAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            148514  8 -    375362 --TGAGGAAG
i saiBol1.JH378348         C 0 I 25554
s otoGar3.GL873742           1487433  8 -   2232465 TTAGGAAG--
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1       88349 23019 -    285216 I
e cebCap1.NW_016108108v1      150468 15123 -    373274 I
e calJac3.chr4             171319990 21047 - 171630274 I

a score=1658673.000000
s hg38.chr6_GL000254v2_alt     92361 277 +   4827813 AAATACAAggccaagcatggtagcacacgcctgtaatcccagcactttggaagt-ctgaggtgggcagatcacc---------tgaggtcgggagttctagactagcctgaccaacagggagaaac-ccccatctct---------------actaaaaatacaaaattagccaggcatggt----ggtgcatggttgtaatcccagctactcaggaggctgaggcaggagaatcacttgaatccgggaggcagaggttgtggtgagccaagattgtgctattgca-ctccagcct-gggcaacaagag
s panTro5.chr6              29062948 277 + 175400573 AAACACAAggccaagcatggtagcacacgcctgtaatcccagcactttggaagg-ctgaggtgggcagatcacc---------tgaggtcgggagttctagactagcctgaccaacagggagaaac-ccccatctct---------------actaaaaatacaaaattagcgaggcatggt----ggtgcatgcttgtaatcccagctactcaggagactgaggcaggagaatcacttgaatccgggaggcagaggttgtggtgagccaagattgtgctattgca-ctccagcct-gggcaacaagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29306945 277 + 173848474 AAACACAAggccaagcatggtagcacacgcctgtaatcccagcactttggaagg-ctgaggtgggcagatcacc---------tgaggtcgggagttctagactagcctgaccaacagggagaaac-ccccatctct---------------actaaaaatacaaaattagcgaggcatggt----ggtgcatgcttgtaatcccagctactcaggagactgaggcaggagaatcacttgaatccgggaggcagaggttgtggtgagccaagattgtgctattgca-ctccagcct-gggcaacaagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5107087 277 +   6154872 AAACACAAggccaagcatggtagcacacgcctgtaatcccagtactttggaagg-ctgaggtgggcagatcacc---------tgaggtagggagctctagactagcctgaccaacagggagaaac-ccccatctct---------------actaaaaatacaaaattagccaggcatggt----ggtgcatgcttgtaatcccagctactcaggaggctgaggcaggagaatcacttgaatccgggaggcagaggttgtggtgagccaagattgtgctattgca-ctccagcct-cggcaacaagag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74112865 286 + 122973662 AAACACAAggccaggcgtggtagcacatgcctgtaatcacagcactttgggagg-ctgaggtgggcagatcacctgaggtcggtgaggtcgggagttcgagactagcctgaccaacagggagaaac-ccccgtctct---------------actaaaaatacaaaattagctgagcatggt----ggtgcatgcttgtaatcccagctactcgggaggctgaggcaggagaatcacttgaatccaggaggcagaggttgtggtgagccaagattgtgctattgca-ctccagcct-gggcaacaagaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29289460 277 + 172585720 AAACGCAAggtcaggcatggtagcacacgcctgtaatcccagcacttggggagg-ctaaggtggatggatcacc---------tgaggttggaagttcgagactagcctgaccaagagggagaaac-ctccacctct---------------actaaaaatataaaattagccgggcatggt----ggtgcatgcttgtaatcccagctactcaggatgctgaggcaggagaatcacttgaatccaggaggcagaggttgtggtgagccaagattgcactattgta-ctccagcct-gggcaataagag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28939294 277 - 170955103 AAACGCAAggtcaggcatggtagcacacgcctgtaatcccagcacttggggagg-ctaaggtggatggatcacc---------tgaggttgggagttcgagactagcctgaccaagagggagaaac-ctccacctct---------------actaaaaatataaaattagccgggcatggt----ggtgcatgcttgtaatcccagctactcaggatgctgaggcaggagaatcacttgaatccaggaggcagaggttgtggtgagccaagattgcactattgta-ctccagcct-gggcaataagag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1917354 277 -   2996164 AAATGCAAggtcaggcatggtagcacacgcctgtaatcccagcacttggggagg-ctaaggtggatggatcacc---------tgaggttgggagttcgagactagcctgaccaagagggagaaac-ctccacctct---------------actaaaaatataaaattagccgggcatggt----ggtgcatgcttgtaatcccagctactcaggatgctgaggcaggagaatcacttgaatccaggaggcagaggttgtggtgagccaagattgcactattgta-ctccagcct-gggcaacaagag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1798720 279 -   2157725 AAACGCAAggtcaggcatggtagcacaagcctgtaatcccagcacttcgggagg-ctaaggtggatggatcacc---------tgaggttgggagttcgagactagcctgaccaagagggagaaac-ctccacctct---------------actaaaaatacaaaattagccgggcatggt----ggtgcatgcttgtaatcccagctactcaggaggctgaggcaggagaatcacttgaatccaggaggcagaggttgtggtgagccaagattgcctaattgtagctccagcctcgggcaacaagaa
i cerAty1.NW_012001495v1   C 0 I 78
s chlSab2.chr17             28257234 277 -  71996105 AAACACAAggtcaggcatggtagcacacgcctgtaatcccagcacttcgggagg-ctgaggtggatggatcacc---------tggggttgggagttcgagactagcctgaccaagagggagaaac-ctccatctct---------------actaaaaatacaaaattagccgggcatggt----ggtgcatgcttgtaatcccagctactcaggaggctgaggcaggagaatcacttgaatccaggaggtagaggttgtggtgagccaatattgcactattgca-ctccagcct-gggcaacaagag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1925101 277 +   2316924 AAACACAAggtcaggcatggtagcacacgcctgtaatcccagcacttcgggagg-ctgaggtgggtggatcacc---------tgaggttgggagttcgagactagcctgaccaagagggagaaac-ctccgtctct---------------actaaaaatacaaaattagccaggcatggt----ggtgcgtgcttataatcccagctactcaggaggctgaggcaggagaaccacttgaatccaggaggcagaggttgtggtgagccaatattgcactattgca-ctccagcct-gggcaacaagag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1797919 277 -   3067355 AAACGCAAggccaggcatggtagcacatgcctgtaatcccagcactttgggagg-ctgaggtggatggatcacc---------tgaggttgggagttcgagactagcctgaccaagagggagaaac-ctccatctct---------------actaaaaatacaaaattagccgggcatggt----ggtgcatgcttgtaatcccagctactcgggaggctgaggcaggagaatcacttgaatccaagaggcagaggttgtggtgagccaagattgcactattgca-ctccagcct-gggcaacaagag
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1487441 272 -   2232465 -----------------AAgcggctcacgcctgtaatcccagcaacttgggaggcccgaagcgggagaattgcc---------tgaactgacagattcgagacca----gaccaagccagagagacacctcgtctcttaaaaaaaaaaaaaaattaaaaaT-Taaaactagcaggtcgttgtggcgggcgcctacatgtagtcccagttacttgggaggctgaggcaagagaatcgcttaaacccaagagtttgaggttgctgtgagctgtga---cgccacagca-ctttaccaa-gggtgacatag-
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            148522 25554 -    375362 I
e aotNan1.NW_018494050v1       88349 23019 -    285216 I
e cebCap1.NW_016108108v1      150468 15123 -    373274 I
e calJac3.chr4             171319990 21047 - 171630274 I

a score=83040.000000
s hg38.chr6_GL000254v2_alt     92638 42 +   4827813 tgaaactctgtctcaaacaaataaacaaacaaa--------caaacaaac--------
s panTro5.chr6              29063225 26 + 175400573 tgaaactctgtct----------------caaa--------caaacaaac--------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29307222 26 + 173848474 tgaaactctgtct----------------caaa--------caaacaaac--------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5107364 28 +   6154872 tgaaa--ctgtct------------caaactaa--------caaacaaac--------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74113151 22 + 122973662 cgaaactctgtct----------------------------caaaaaaac--------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29289737 31 + 172585720 cgaaattctgtct----------------caaa---aaaaCCAACCAAAC--------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28939571 31 - 170955103 cgaaattctgtct----------------caaa---aaaaCCAACCAAAC--------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1917631 31 -   2996164 cgaaattctgtct----------------caaa---aaaaCCAACCAAAC--------
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28257511 31 -  71996105 cgaaattctgtct----------------caaa---aaaaccaaacaaac--------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1925378 31 +   2316924 cgaaattctgtct----------------caaa---aaaaccaaacaaac--------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1798196 31 -   3067355 tgaaattctgtct----------------caaa---aaaaccaaacaaac--------
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1487713 42 -   2232465 tgagactctgttt----------------caaagaggaaattaaaaaaaaaGAAAGAT
i otoGar3.GL873742         C 0 I 77
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            148522 25554 -    375362 I
e aotNan1.NW_018494050v1       88349 23019 -    285216 I
e cebCap1.NW_016108108v1      150468 15123 -    373274 I
e calJac3.chr4             171319990 21047 - 171630274 I
e cerAty1.NW_012001495v1     1798999 78 -   2157725 I

a score=120391.000000
s hg38.chr6_GL000254v2_alt     92680 27 +   4827813 aaacaCCACACACAGGAAAGGACTTGC
s panTro5.chr6              29063251 27 + 175400573 aaaCACCACACACAGGAAAGGACTTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29307248 27 + 173848474 aaaCACCACACACAGGAAAGGACTTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5107392 27 +   6154872 aaaCACCACACACAGGAAAGGACTTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74113173 27 + 122973662 aaaCACCACACACACAAAAGGACTTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29289768 27 + 172585720 AAACACCACACACACAAAAGGACTTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28939602 27 - 170955103 AAACACCACACACACAAAAGGACTTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1917662 27 -   2996164 AAACACCACACACACAAAAGGACTTAA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28257542 27 -  71996105 aaaCACCACACACACAAAAGGACTTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1925409 27 +   2316924 aaaCACCACACACACAAAAGGACTTAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1798227 27 -   3067355 aaaCACCACACACACAAAAGGACTTAA
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e saiBol1.JH378348            148522 25554 -    375362 I
e otoGar3.GL873742           1487755 77 -   2232465 I
e aotNan1.NW_018494050v1       88349 23019 -    285216 I
e cebCap1.NW_016108108v1      150468 15123 -    373274 I
e calJac3.chr4             171319990 21047 - 171630274 I
e cerAty1.NW_012001495v1     1798999 78 -   2157725 I

a score=46558.000000
s hg38.chr6_GL000254v2_alt     92707 8 +   4827813 GCCACGTG
s panTro5.chr6              29063278 8 + 175400573 GCCACGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29307275 8 + 173848474 GCCACGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5107419 8 +   6154872 GCCACGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74113200 8 + 122973662 GCCACATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29289795 8 + 172585720 GCCACACG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28939629 8 - 170955103 GCCACACG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1917689 8 -   2996164 GCCACACG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28257569 8 -  71996105 GCCACACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1925436 8 +   2316924 GCCACACG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1798254 8 -   3067355 GCCACACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171341037 8 - 171630274 GCCACACA
i calJac3.chr4             I 21047 C 0
s saiBol1.JH378348            174076 8 -    375362 GCCACACA
i saiBol1.JH378348         I 25554 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1487755 77 -   2232465 I
e aotNan1.NW_018494050v1       88349 23019 -    285216 I
e cebCap1.NW_016108108v1      150468 15123 -    373274 I
e cerAty1.NW_012001495v1     1798999 78 -   2157725 I

a score=72822.000000
s hg38.chr6_GL000254v2_alt     92715 8 +   4827813 GTTCTATG
s panTro5.chr6              29063286 8 + 175400573 GTTCTATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29307283 8 + 173848474 GTTCTATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5107427 8 +   6154872 GTTCTATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74113208 8 + 122973662 GTTCTATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29289803 8 + 172585720 GTTCTGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28939637 8 - 170955103 GTTCTGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1917697 8 -   2996164 GTTCTGTG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28257577 8 -  71996105 GTTCTGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1925444 8 +   2316924 GTTCTGTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1798262 8 -   3067355 GTTCTGTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171341045 8 - 171630274 GTTCTATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            174084 8 -    375362 GTTCTATG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      165591 8 -    373274 GTTCTATG
i cebCap1.NW_016108108v1   I 15123 C 0
s aotNan1.NW_018494050v1      111368 8 -    285216 GTTCTATG
i aotNan1.NW_018494050v1   I 23019 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1487755 77 -   2232465 I
e cerAty1.NW_012001495v1     1798999 78 -   2157725 I

a score=657507.000000
s hg38.chr6_GL000254v2_alt     92723 71 +   4827813 GTTTCTGATTATTTCATTTACAACTAGAAA-TAGGCTGG-AGG-GCCAGGAG-TAGTA-CTTG--CTTCCATAGTG-CG
s panTro5.chr6              29063294 71 + 175400573 GTTTCTGATTATTTCATTTACAACTAGAAA-TAGGCTGG-ATG-GCCAGGAG-TAGTA-CTTG--CTTCCATAGTG-CG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29307291 71 + 173848474 GTTTCTGATTATTTCATTTACAACTAGAAA-TAGGCTGG-ATG-GCCAGGAG-TAGTA-CTTG--CTTCCATAGTG-CG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5107435 71 +   6154872 GTTTCTGATTATTTCATTTACAACTAGAAA-TAGGCTGG-ATG-GCCAGGAG-TAGTA-CTTG--CTTCCATAGTG-CG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74113216 71 + 122973662 GTTTCTGATTATTTCATTTACAACTAGAAA-TAGGCTGG-ATG-GCCAGGAA-TAGTA-CTTG--CTTCCATAGTG-CG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29289811 71 + 172585720 GTTTCTGATTATTTCATTTACAGCTAGAAA-TTGGCTGG-ATG-GCCAGGAA-TAGTA-CTTG--CTTCCATAGTG-CG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28939645 71 - 170955103 GTTTCTGATTATTTCATTTACAGCTAGAAA-TTGGCTGG-ATG-GCCAGGAA-TAGTA-CTTG--CTTCCATAGTG-CG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1917705 71 -   2996164 GTTTCTGATTATTTCATTTACAGCTAGAAA-TTGGCTGG-ATG-GCCAGGAA-TAGTA-CTTG--CTTCCATAGTG-CG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1799077 78 -   2157725 GTTTCTGATTATTTCA-TTACAGCTAGAAATTTGGCTGGAATGTGCCAGGAATTAGTATCTTGCCCTTCCATAGTGCCG
i cerAty1.NW_012001495v1   I 78 C 0
s chlSab2.chr17             28257585 71 -  71996105 GTTTCTGATTATTTCATTTACAGCTAGAAA-TTGGCTGG-ATG-GCCAGGAA-TAGTA-CTTG--CTTCCATAGTG-CG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1925452 71 +   2316924 GTTTCTGATTATTTCATTTACAGCTAGAAA-TTGGCTGG-ATG-GCCAGGAA-TAGTA-CTTG--CTTCCAGAGTG-CG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1798270 71 -   3067355 GTTTCTGATTATTTCATTTACAGCTAGAAA-TTGGCTGG-ATG-GCCAGGAA-TAGTT-CTTG--CTTCCATATTG-TG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171341053 71 - 171630274 GTTTCTGATTATTTTATTTACAACTAGAAA-GTGGCTGC-ATA-GCCAGGAA-TAATA-CTCT--CTTCCATAGTG-TG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            174092 71 -    375362 GTTTCTGATTATTTTATTTACAACTAAAAA-TTGGCTGG-ATA-GCCAGGAA-CAATA-CTTG--CTTCCATAGTT-CG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      165599 71 -    373274 GTTTCTGATTATTTTATTTACAACTAGAAA-TTGACTGG-ATA-GCCAGGAA-CAATA-CTTG--CTTCCATAGTG-CA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      111376 71 -    285216 GTTTCTGATGATTTTATTTACAACTAAAAA-TTGGCTGG-ATA-GCCAGGAA-TAATA-TTTG--CTTCCATAGCG-CA
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1487755 77 -   2232465 I

a score=740513.000000
s hg38.chr6_GL000254v2_alt     92794 82 +   4827813 TGGTTCACCT--TAGTGACTGCTGGGACT-GCTT--AGAAAGAATAGGTGGATAAT-CGTAAGCAGCAAATAACCTTAAGTG-AATGAA
s panTro5.chr6              29063365 82 + 175400573 TGGTTCACCT--TAGTGACCGCTGGGACT-GCTT--AGAAAGAATAGGTGGATAAT-CTTAAGCAGCAAATAACCTTAAGTG-AATGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29307362 77 + 173848474 TGGTTCACCT--TAGTGACCGCTGGGACT-GCTT--AGAAAGA-----TGGATAAT-CTTAAGCAGCAAATAACCTTAAGTG-AATGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5107506 82 +   6154872 TGGTTCACCT--TAGTGACTGCTGGGACT-GCTT--AGAAAGAATAGGTGGATAAT-CGTAAGCAGCAAATAATCTTAAGTG-AATGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74113287 82 + 122973662 TGGTTCATCT--TAGTGACTGCTGGGACT-GCTT--AGAAAGAATAGGTGGATAAT-CGTAAGCAGCAAATAACCTTAAGTG-AATGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29289882 82 + 172585720 TGGTTCACCT--TAGTGACTGCTGGGACT-GCTT--AGAAAGAATAGGTGGATAAT-TATAAGCAGCAAATAACCTTAAGTG-AATGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28939716 82 - 170955103 TGGTTCACCT--TAGTGACTGCTGGGACT-GCTT--AGAAAGAATAGGTGGATAAT-TATAAGCAGCAAATAACCTTAAGTG-AATGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1917776 82 -   2996164 TGGTTCACCT--TAGTGACTGCTGGGACT-GCTT--AGAAAGAATAGGTGGATAAT-TATAAGCAGCAAATAACCTTAAGTG-AATGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1799155 85 -   2157725 TGGTTCACCT--TAGTGACTGCTGGGACTCGCTT--AGAAAGAACAGGTGGATAATCCATAAGCAGCAAATAACCTTAAGTGAAATGTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28257656 82 -  71996105 TGGTTCACCT--TTGTGACTGCTGGGACT-GCTT--AGAAAGAATAGGTGGATAAT-CATAAGCAGCAAATAACCTTAAGTG-AATGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1925523 82 +   2316924 TGGTTCACCT--TAGTGACTGCTGGGACT-GCTT--AGAAAGAATAGGTGGATAAT-CATAAGCAGCAAATAACCTTAAGTG-AATGAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1798341 81 -   3067355 TGGTTCACCT--TAGTGGCTGCTGGGACT-GCTT--AGAAAGAATAGGTGGATAAT-CATAAGCAGCAAATAATCTT-AGTG-AATGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171341124 82 - 171630274 TGGTTCACCT--TAGTGGCTCCTGGGACT-CCTT--AGCAAGAGTAGATGGCTAAT-CCTAAACAACAAATAACCTTACGTG-AATGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            174163 82 -    375362 TGGTTCACCT--TAGTGGCCCCTGGGACT-CCTC--AGCAAGAGTAGGTGCCTAAT-CCTAAACAACGAATAACCTTAAGTG-AATGAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      165670 82 -    373274 TGGTTCACCT--TAGTGGCTCCTGGGACT-CCTT--AGCAAGAGTAGGTGGCTAAT-CCAAAACAACAAATAGCCATAAGTG-AATGAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      111447 81 -    285216 TGGTTCACCT--TAGTGGCTCCCGGGACT-CCTT--AGCAAGAGTAGATGGCTAAT-CCTAAACAAC-AATAACCTTAAGTG-AATGAA
i aotNan1.NW_018494050v1   C 0 I 6
s otoGar3.GL873742           1487832 59 -   2232465 TGATCCACATGGTAGTGATTTTCGGGAGT-GTCTGCAGAGAGAGTAGGAGGGAATT-TGAA----------------------------
i otoGar3.GL873742         I 77 C 0
e canFam3.chr35             25853030 244 +  26524999 I

a score=491679.000000
s hg38.chr6_GL000254v2_alt     92876 60 +   4827813 CACGAATTACCTCTCTGTA--T--GAGAGAGAGATGTA-G--AGGTCAACCCAAATAT-CTTGACAA-G
s panTro5.chr6              29063447 60 + 175400573 CACGAATTACCTCTCTGTA--T--GAGAGAGAGATGTA-G--AGGTCAACCCAAATAT-CTTGACAA-G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29307439 60 + 173848474 CACGAATTACCTCTCTGTA--T--GAGAGAGAGATGTA-G--AGGTCAACCCAAATAT-CTTGACAA-G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5107588 60 +   6154872 CACGAATTACCTCTCTGTA--T--GAGAGAGAGATGTA-G--AGGTCAACCCAAATAT-CTTGACAA-G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74113369 60 + 122973662 CACGAATTACCTCTCTGTA--T--GAGAGAGAGTTGTA-G--AGATCAACCCAAATAT-CTTGACAA-G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29289964 60 + 172585720 CAAGAATTACCTCTCTGTA--T--GAGAGAGAGATGTA-G--AGGTCAACCCAGATAT-CTTGACAA-G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28939798 60 - 170955103 TAAGAATTACCTCTCTGTA--T--GAGAGAGAGATGTA-G--AGGTCAACCCAGATAT-CTTGACAA-G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1917858 60 -   2996164 CAAGAATTACCTCTCTGTA--T--GAGAGAGAGATGTA-G--AGGTCAACCCAGATAT-CTTGACAA-G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1799240 64 -   2157725 CAAGAATTACCGTCTCGTAACT--GAGAGAGAGATGTACG--AGGTCAACGCAGATAT-CTTGACAACG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28257738 62 -  71996105 CAAGAATTACCTCTCTGTA--TGAGAGAGAGAGATGTA-G--AGGTCAACTCAGATAT-CTTGACAA-G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1925605 60 +   2316924 CAAGAATTACCTCTCTGTA--T--GAGAGAGAGATGTA-G--AGGTCAACCCAGATAT-CTTGACAA-G
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1798422 60 -   3067355 CAAGAATTACCTCTCTGTA--T--GAGAGAGAGATGTA-G--AGGTCAACCCAGATAT-CTTGACAA-G
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171341206 60 - 171630274 CAGGAAGTATCTCTCTGTA--T--GAGAAAGAGAGGCA-G--AGGTCAACACAAACAT-CTTGACAA-G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            174245 60 -    375362 CAGGAAGTATCTCTCCGTA--T--GAGAGAGAGATGTC-G--AGGTCAACGCAAACAT-CTTGACAA-G
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      165752 60 -    373274 CAGGAAGTATCTCTCTGTA--T--GAGAGAGAGATGTA-G--GGGTCAACACAAACAT-CTTGATAA-G
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1487891 51 -   2232465 -------------TTTGGA-TT--GAGAAACTAATACA-GAAAGGCTAACAGAACTCTGCTTGTCAA-G
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e aotNan1.NW_018494050v1      111528  6 -    285216 I

a score=3374981.000000
s hg38.chr6_GL000254v2_alt     92936 347 +   4827813 -----GCAGGACATTCTGGACAGCT---GGGGAAGG----TCATGGAGCTCTTC--TTACAGTGCCACAGG---------GAA-GAAAATGGACCTCt---ggaggtactggggaatcagcccaagacctcgtgcatgataagtacactctctaccactgagctatacccccTC--------ATACCTCCTGTGTA----TTTGGAAAACTGGTGACCACCATTATCTGAGTATGTGCTCTATGTCATAAAGACAATTACCATGTGTTTCCAATTCCACTGTTTATGATTTCCCTATATCTAAGTGCCCCCTCTCTTAGGCAC-GGTTACATCAAGAAAAGGTACGTTAACAGTAAAAAGAAAAA----------------------------------------------------------------------------CACTGTTCCTGATTTGGGATCA
s panTro5.chr6              29063507 347 + 175400573 -----GCAGGACATTCTGGACAGCT---GGGGAAGG----TCATGGAGCTCTTC--TTACAGTGCCACGGG---------GAA-GAAAATGGACCTCt---ggaggtactgggaaatcagcccaagacctcgtgcatgataagtacacactctaccactgagctatacccccTC--------ATACCTCCTGTGTA----TTTGGAAAACTGGTGACCACCATTATCTGAGTATGTGCTCTATGTCATAAAGACAATTACCATGTGTTTCCAATTCCACTGTTTATGATTTCCCTATATCTAAGTGCCCCCTCTCTTAGGCAC-GGTTACATCACGAAAAGGTACGTTAACAGTAAAAAGAAAAA----------------------------------------------------------------------------CACTGTTCCTGATTTGGGATCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29307499 347 + 173848474 -----GCAGGACATTCTGGACAGCT---GGGGAAGG----TCATGGAGCTCTTC--TTACAGTGCCACGGG---------GAA-GAAAATGGACCTCt---ggaggtactgggaaatcagcccaagacctcgtgcatgataagtacacactctaccactgagctatacccccTC--------ATACCTCCTGTGTA----TTTGGAAAACTGGTGACCACCATTATCTGAGTATGTGCTCTATGTCATAAAGACAATTACCATGTGTTTCCAATTCCACTGTTTATGATTTCCCTATATCTAAGTGCCCCCTCTCTTAGGCAC-GGTTACATCACGAAAAGGTACGTTAACAGTAAAAAGAAAAA----------------------------------------------------------------------------CACTGTTCCTGATTTGGGATCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5107648 347 +   6154872 -----GCAGGACATTTTGGACAGCT---GGGGAAGG----TCATGGAGCTCTTC--TTACAGTGCCACGGG---------GAA-GAAAATGGACCTCt---ggaggtactggggaatcagcccaagacctcgtgcatgataagtacacgctctaccactgagctatacccccTC--------ATACCTCCTGTGTA----TTTGGAAAACTGGTGACCACCATTATCTGAGTATGTGCTCTATGTCATAAAGACAATTACCATGTGTTTCCAATTCCACTGTTTATGATTTCCCTATATCTAAGTGCCCCCTCTCTTAGGCAC-GGTTACATCACGAAAAGGTACCTTAACAGTAAAAAGAAAAA----------------------------------------------------------------------------CACTGTTCCTGATTTGGGATCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74113429 334 + 122973662 -----GCAGGACATTTTGGACAGCTTGGGGGGAAGG----CCATGGAGCTCTTC--TTACAGTGCCACCTG---------ATA-GAAAATGGACCTCt---ggaggtactggggaatcagcccaagacctcgtgcatgataagtacatgctctaccactgagttata-tcccTC--------ATACCTCCTGTGTA----TTTGGAAAACTGGTGACCACCATTATCTGAGTATGTGCTCTATGTCATAAAGACAATTACCATGTGCATCCAATTCCACTGTTTA---------------TAAGTGCCCCCTCTCTTAGGCAC-AGTTATACCATGTAAAGGTACCTTAACAGTAAAAAGAAAAG----------------------------------------------------------------------------CACTGTTCCTGATTTGGGATCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29290024 347 + 172585720 -----GCAGGAAATTTTGGACAGCT---AGGGAAGG----TCATGGAGCTCTTC--TTACAGTGCCACCAG---------GAA-GGAAATGGACCTCt---ggaggtactggggaatgagtccaagaccttgtgcatgataagtacacactctaccactgagctatacccccTC--------ATAACTCTTGTGTA----TTTGGAACACTGGTGACCACCATTATCTGAGTATGTGCTCTATGTCATAAAGACAATTACCATGTGTTTCCAATTCCACTGTTTTTGATTTCCCTATATCTGAGTGCCCCCTCTCTTAGGCAC-GGTTACACCATGAAAAGGTACCTTAACAGTAAAAAGAAAAG----------------------------------------------------------------------------CACTGTTTCTGACTTGGGATCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28939858 347 - 170955103 -----GCAGGAAATTTTGGACAGCT---AGGGAAGG----TCATGGAGCTCTTC--TTACAGTGCCACCAG---------GAA-GGAAATGGACCTCt---ggaggtactggggaatgagtccaagaccttgtgcatgataagtacacactctaccactgagctatacccccTC--------ATAACTCTTGTGTA----TTTGGAACACTGGTGACCACCATTATCTGAGTATGTGCTCTATGTCATAAAGACAATTACCATGTGTTTCCAATTCCACTGTTTTTGATTTCCCTATATCTGAGTGCCCCCTCTCTTAGGCAC-GGTTACACCATGAAAAGGTACCTTAACAGTAAAAAGAAAAG----------------------------------------------------------------------------CACTGTTCCTGATTTGGGATCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1917918 347 -   2996164 -----GCAGGAAATTTTGGACAGCT---AGGGAAGG----TCATGGAGCTCTTC--TTACAGTGCCACCAG---------GAA-GGAAATGGACCTCt---ggaggtactggggaatgagcccaagaccttgtgcatgataagtacacactctaccactgagctatacccccTC--------ATAACTCTTGTGTA----TTTGGAACACTGGTGACCACCATTATCTGAGTATGTGCTCTATGTCATAAAGACAATTACCATGTGTTTCCAATTCCACTGTTTTTGATTTCCCTATATCTGAGTGCCCCCTCTCTTAGGCAC-GGTTACACCATGAAAAGGTACCTTAACAGTAAAAAGAAAAG----------------------------------------------------------------------------CACTGTTCCTGATTTGGGATCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1799304 348 -   2157725 -----GCAGGAAATTTTGGACAGCT---AGGGAAGG---TTCATGGAGCTCTTC---TACAGTGCCACCAG---------GAAGGGAAAATGACCTCt---ggaggtactggggaatgagcccaagaccttgtgcatgataagtacacactctaccactgagctatacccccTC--------ATAACTCCTGTGTA----TTTGGAAAACTGGTGACCACCATTATCTGAGTATGTGCTCTATGTCATAAAGACAATTACCATGTGTTTCCAATTCCACTGTTTTTGACTTTCCTTTATCTGAGTGCCCCCTCTCTTAGGCAC-GGTTACACCACGAAAAGGTACCTTAACAGTAAAAAGAAAAG----------------------------------------------------------------------------CACTGTTCCTGATTTGGGATCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28257800 347 -  71996105 -----GCAGGAAATTTTGGACAGCT---GGGGAAGG----TCATGGAGCTCTTC--TTACAGTGCCACCAG---------GAA-GAAAACGGATCTCt---ggaggtactggggaatgagcccaagaccttgtgcatgataagtacacactctaccactgagctatatccccTC--------ATAACTCCTGTGTA----TTTGGAACACTGGTGACCACCATTATCTGAGTATGTGCTCTATGTCATAAAGACAATTACCATGTGTTTCCAATTCCACTGTTTTTGATTTCCCTTTATCTGAGTGCCCCCTCTCTTAGGCAC-GGTTACACCACGAAAAGGTACCTTAACAGTAAAAAGAAAAG----------------------------------------------------------------------------CACTGTTCCTGATTTGGGATCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1925665 347 +   2316924 -----GCAGGAAATTTTGGACAGCT---GGGGAAGG----TCATGGAGCTCTTC--TTACAGTGCCACCAG---------GAA-GAAAACGGATCTCt---ggaggtactggggaatgagcccaagaccttgtgcatgataagtacacactctaccactgagctatacccccTC--------ATAACTCCTGTGTA----TTTGGAAAACTGGTGACCACCATTATCTGAGTATGTGCTCTATGTCATAAAGACAATTACCATGTGTTTCCAATTCCACTGTTTTTGACTTTCCTTTATCTGAGTGACCCCTCTCTTAGGCAC-GGTTACACCACGAAAAGGTACCTTAACAGTAAAAAGAAAAG----------------------------------------------------------------------------CACTGTTCCTGATTTGGGATCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1798482 347 -   3067355 -----GCAGGAAATTTTGGACAGCT---GGGGAAGG----TCATGGAGCTCTTC--TTACAGTGCCACCAG---------GAA-GAAAATAGATCTCt---ggaggtactggggaatgagcccaggaccttgtgcatgataagtacacactctaccactgagctatacccccTC--------ATAACTCCTGTGTA----TTTGGAACACTGGTGACCACCATTATCTGAGTACGTGCTCTATGTCATAAAGACAATTACCATGTATTTCCAATTCCACTGTTTTTGATTTCCCTATATCTGAGTGCCCCCTCTCTTAGGCAC-GGTTACACCATGAAAAGGTACCTTAACAATAAAAAGAAAAG----------------------------------------------------------------------------CACTGTTCCTGATTTGGGATCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171341266 347 - 171630274 -----GCAGGAAATTTTGGACAGCT---CGGGAAGG----TCATGGAGTGCTTC--TTACAGTGCCTTGGG---------GAA-GAAAATGGACCTCtggaggaggtactgggaattgaacccaagacttcatgcatgctaagtacatgctctatcactgggctatatccccTC--------ACAACTCCTGTGTA----TTTGGAAAGCTGGTGACTGCCATTATCTGAGTATGCTCTA--TGTCGTAAAGACAATTATCATGTGTGTTCATTTCTACTGTTTATGATTTCCCTATATCTAAGTG-CTCCTGTCTTAGGCAC-AGTTACATCACAAAAAGATACCCCAATGGTAAAAAGAAAAG----------------------------------------------------------------------------CGCTGTTACTGATTTGGGATCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            174305 422 -    375362 -----GCAGGAACTTTTGGAAAGCT---GGGGAAGG----TCATGGAGTGCGTC--TTACAGTGCCTCGGG---------GAA-GAAAATGGACCTCTGCAggaggtactggggatcgaacccaagacctcatgcatgctaagtacgtgctctaccactgggctatatccccTC--------ATAACTCCTGTGTA----TTTGGAAAACTGGTGACTGCCATTATCTGAGTA-GTGCTC--TGTCCTAAAGACAATTATCATGTGTTTTCATTTCCACTGTTTATGATTTCCCTATATCTAAGTG-CTCCTCTCTTAGGCAC-AGTTATATCACAAAAAGATACCCTAATGGTaaaaaaaaaaaaaaaaaaaaCCACTGCACGCCAGCCTGGGCAACAATGGAACACaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaTCGCTGTTCCTGATTTGGGATCA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      165812 347 -    373274 -----GCAGGAAATTTTGGACAGCT---GGGGAAGG----TCATGGAGTGCTTC--TTACAGTGCCTCGGG---------GAA-GAAAATGGGCCTCtggaggaggtactggggattgaacccaagacctcatgcatgctaagtacatgctctaccactgggctatatccccTC--------ATAACTCCTGTGTA----TTTGGAAAACTGGTGACTGCCATTATCGGAGTACATGCTC--TGTCATAAAGACAATTATCATGTGTTTTCATTTCCACTGTTTATGACTTCCCTATATCTAAGTG-CTCCTCTCTTAGGCACAAGCGCTATCACAAAAAGATACCCTAATGGTAAAAAGAAAT-----------------------------------------------------------------------------CGCTGTTCCTGATTTGGGATCA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      111534 349 -    285216 -----GCAGGAAATTTTGGGCAGCT---GGGGAAGG----CCATGGAGTGCTTC--TTACAGTGCCTCGGG---------GAA-GATAATGGACCGCtggaggaggtactgggaattgaacccaagacctcacacatgctaagtacctgctctaccactgggccatatccccTC--------ATCACTCCTATGTA----GTCGGAAAGCTGGTGACTGCCATTATCTGAGTACGTGCTCTATGTCATAAAGACAATTATCATGCGTTTTCATTTCCACTGTTTATGATTTCCCTATATCTAAGTG-CTCCTCTCTTAGGCAT-AGTTACATCACAAAAAGATACCCTAATGGTAAAAAGAAAAG----------------------------------------------------------------------------TGCTGTTCCTGATTTGGGATCA
i aotNan1.NW_018494050v1   I 6 C 0
s otoGar3.GL873742           1487942 344 -   2232465 GTAGTGTATTGTATTTTGGAGAGCT---GGAGAAAGGAATTTAAAGAGTGCTTCTCTTACAGGCCTTTGTGAAGGAAGATGAA-GAAAATAGGTCAATt--ggaggtactggggattgaacccaggacctcgtgcatgctaagcacgcgctctaccactgagctatacccccTCTTTGAGAAGTATCTTTCAAGAAACCCTTTG----ATTGATGACCACCATTATCTAAGCCTAAATTCAGAGTTCTCCGGACAGTTTCC---TGTTTTGAATTCAATTGTTTATAAATTCCCTACACT---ATGCTCTCTGTCTTATGCAC-AACTA---CACGAGAAGG---------------------------------------------------------------------------------------------------CACTGTTCTTGATTTGAGGTCA
i otoGar3.GL873742         C 0 I 3828
e canFam3.chr35             25853030 244 +  26524999 I

a score=5960562.000000
s hg38.chr6_GL000254v2_alt     93283 606 +   4827813 GCAAATCTATTTCCAAATAGA-----------gcatttcaaaagtataacataaccacattgaaaattcaggaaagaattgacctaagaaaatggtttatacattgttctcattgtaaaaagaaaaagaacagcaagcatatcttaaactctatgtatcaggaatattttctgtaatgctaaggcaatagcaattctgatattttgtgtgaattttaggattggaaaaatgagcatgtgtgcgcctgtatgttgttggaaccaggctctcactgtgggaaaggaggaaggtaaagaatagtcctattggtgatgatgggaattagaggcatcagtatgaaattatac--acttaattgtaaaatttctccacagatctctctgctaattgggcctagaagaaatgatacctcagatgcaatgagcaaagataattctatatattgattttcaaataccactccctactaaaaggaaccagcgatactgatagaaagtagctactggtgtc------aactacactgactccgggactgtgccagggaaactacaagatgaacctaagatatcttgctgtgccagaatgtaggtgctcagaattgatgggtatgatttgaaagg----ac
s panTro5.chr6              29063854 606 + 175400573 GCAAATCTATTTCCAAATAGA-----------gcatttcaaaagtataacataaccacattgaaaattcaggaaagaatttacctaagaaaatggtttatacattgttctcattgtaaaaagaaaaagaacagcaagcatatcttaaactctatgtatcaggaatattttctgtaatgctaaggcaatagcaattctgatattttgtgtgaattttaggattggaaaaatgagcgtgtgtgcgcctgtatgttgttggaaccaggctctcactgtgggaaaggaggaaggtaaagaatagtcctattggtgatgatgggaattagaggcatcagtatgaaattatac--acttaattgtaaaatttctccacagatctctctgctaattgggcctagaagaaatgatacctcagatgcaatgagcaaagataattctatatattgattttcaaataccactccctactaaaaggaaccagcgatactgatagaaagtagctactggtgtc------agctacactgactccaggactgtgccagggaaactacaagatgaacctaagatatcttgctgtgccagaatgtaggtgctcagaattgatgggtatgatttaaaagg----ac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29307846 606 + 173848474 GCAAATCTATTTCCAAATAGA-----------gcatttcaaaagtataacataaccacattgaaaattcaggaaagaatttacctaagaaaatggtttatacattgttctcattgtaaaaagaaaaagaacagcaagcatatcttaaactctatgtatcaggaatattttctgtaatgctaaggcaatagcaattctgatattttgtgtgaattttaggattggaaaaatgagcgtgtgtgcgcctgtatgttgttggaaccaggctctcactgtgggaaaggaggaaggtaaagaatagtcctattggtgatgatgggaattagaggcatcagtatgaaattatac--acttaattgtaaaatttctccacagatctctctgctaattgggcctagaagaaatgatacctcagatgcaatgagcaaagataattctatatattgattttcaaataccactccctactaaaaggaaccagcgatactgatagaaagtagctactggtgtc------aactacactgactccaggactgtgccagggaaactacaagatgaacctaagatatcttgctgtgccagaatgtaggtgctcagaattgatgggtatgatttaaaagg----ac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5107995 605 +   6154872 GCAAATCTACTTCCAAATAGA-----------gcatttcaaaagtataacataaccacactgaaaattcaggaaagaattgacctaagaaaatggtttatacattgttctcattgtaaaaagaaaaagaacagcaagcatatcttaaactctatgtatcaggaatattttctgtaatgctaaggc-atagaaattctgatattttgtgtgaattttaggattggaaaaatgagcgtgtgtgcgcctgtatgttgttggaaccaggctctcactgtgggaaaggaggaaggtaaagaatagtcctattggtgatgatgggaattagaggcatcagtatgaaattatac--acttaattgtaaaatttctccacagatctctctgctaattgggcctagaagaaatgatacctcagatgcaatgagcaaagataattctatatattgattttcaaataccactccctactaaaaggaaccagcgatactgatagaaagtagctactggtgtc------aactacactgactccaggactgtgccagggaaactacaagatgaacctaagatatcttgctgtgccagaatgtaggtgctcagaattgatgggtatgatttaaaagg----ac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74113763 606 + 122973662 GCAAATCTATTTCCAAATAGA-----------gcatttcaaaagtataacataaccacattgaaaattcaggaaagaattgacctaagaaaatggtttacacactgttctcattgtaaaaagaaaaagaacagcaagcatatattacactctatgtatcaggaatattttctgtaatgctaaggcaatagcaattctgatattttgtgtgaattttaggattgggaaaatgagcatgtgtgagcctgtatgttgctggaaccaggctctcactgtgggaaaggaggaaggtaaagaatagtcctatgggtgatgatgggaattagaggcatcagtatgaaattatac--acttaattgtaaaatttctccacagatctctctgctaactgggcctagaagaaatgatacctcagatgcaatgagcaaagataattctatatattgattttcaaataccattccctactaaaaggaaccagcaatactaatagaaagtagctactggtgtc------aactacactgactccaggactgtgccagggaaactacaagatgaacctaagatatcttgctgtgccagaatgtaggtgctcaggagtgatgggtatgatttaaaagg----ac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29290371 616 + 172585720 GCAAATCTATTTCcaaatagagcaaattaactgcatttcaaaagtataacataaccacattgaaaattcaggaaagaattgacctaagaaaatggtttacacattgttctcattgtaaaaagaaaaagaacagcaagcaaatcttaaactctatgtatcaggaatattttctgtaatgctaaggcaacagtaattctgatattttgtgtgaattttaggattgggaaaatgagagtgtgtgcacctgtgtgttgttggaaccaggttctcactgtgggaaaggaggatggtaaagaatagtcctattggtgatgatgggaattagaggcatcagtatgaagttatac--acttaattgtaaaatgtctccacagatctctctgctaactgggactagaagaaatgatatctcagatgcaatgagcaaagataattctatatattgattttcaaataccattccctactaaaaggaaccagccatactaatagaaagtaactattagtgtc------aactacactgactccaggactgtgccagggaaactacaagatgaacctaagatatcttgctgtgccagaatgtaggtgctcagaattgatgggtatga-ttaaaagg----ac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28940205 616 - 170955103 GCAAATCTATTTCCAAATAGAGCAAATtaactgcatttcaaaagtataacataaccacattgaaaattcaggaaagaattgacctaagaaaatggtttacacattgttctcattgtaaaaagaaaaagaacagcaagcaaatcttaaactctatgtatcaggaatattttctgtaatgctaaggcaacagtaattctgatattttgtgtgaattttaggattgggaaaatgagagtgtgtgcacctgtgtgttgttggaaccaggttctcactgtgggaaaggaggatggtaaagaatagtcctattggtgatgatgggaattagaggcatcagtatgaagttatac--acttaattgtaaaatgtctccacagatctctctgctaactgggactagaagaaatgatatctcagatgcaatgagcaaagataattctatatattgattttcaaataccattccctactaaaaggaaccagccatactaatagaaagtagctattagtgtc------aactacactgactccaggactgtgccagggaaactacaagatgaacctaagatatcttgctgtgccagaatgtaggtgctcagaattgatgggtatga-ttaaaagg----ac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1918265 616 -   2996164 GCAAATCTATTTCcaaatagagcaaattaactgcatttcaaaagtataacataaccacattgaaaattcaggaaagaattgacctaagaaaatggtttacacattgttctcattgtaaaaagaaaaagaacagcaagcaaatcttaaactctatgtatcaggaatattttctgtaatgctaaggcaacagtaattctgatattttgtgtgaattttaggattgggaaaatgagagtgtgtgcacctgtgtgttgttggaaccaggttctcactgtgggaaaggaggatggtaaagaatagtcctattggtgatgatgggaattagaggcatcagtatgaagttatac--acttaattgtaaaatttctccacagatctctctgctaactgggactagaagaaatgatacctcagatgcaatgagcaaagataattctatatattgattttcaaataccattccctactaaaaggaaccagccatactaatagaaagtagctattagtgtc------aactacactgactccaggactgtgccagggaaactacaagatgaacctaagatatcttgctgtgccagaatgtaggtgctcagaattgatgggtatga-ttaaaagg----ac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1799652 616 -   2157725 GCAAATCTATTTCcaaatagagcaaattaactgcatttcaaaagtataacataaccacattgaaaattcaggaaagaattgacctaagaaaatggtttacacattgttctcattgtaaaaagaaaaagaacagcaagcaaatcttaaactctatgtatcaggaatattttctgtaatgctaaggcaacagcaattctgatattttgtgtgaattttaggattgggaaaatgagagtgtgtgcacctgtgtgttgttggaaccaggttctcactgtgggaaaggaggatggtaaagaatagtcctattggtgatgatgggaattagaggcatcagtatgaagttatac--acttaattgtaaaatttctccacagatctctctgctaactgggactagaagaaatgatacctcagatgcaatgagcaaagataattctatatattgattttcaaataccattccctactaaaaggaaccagccatactaatagaaagtagctactagtatc------aactacactgactccaggactgtgccagggaaactactagatgaacctaaggtatcttgctgtgccagaatgtaggtgctcagaattgatgggtatga-ttaaaagg----ac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28258147 616 -  71996105 GCAAATCTATTTCcaaatagagcaaattaactgcatttcaaaagtataacataaccacattgaaaattcaggaaaaaattgacctaagaaaatggtttacacattgttctcattgtaaaaagaaaaagaacagcaagcaaatcttaaactctatgtatcaggaatattttctgtaatgctaaggcgacagcaattctgatattttgtgtgaattttaggattgggaaaatgaaagtgtgtgcacctgtgtgttgttggaaccaggttctcattgtgggaaaggaggatggtaaagaatagtcctattggtgatgatgggaattagaggcatcagtatgaagttatac--acttaattgtaaaatttctccacagatctctctgctaactgggactagaacaaatgatacctcagatgcaatgagcaaagataattctatatattgattttcaaataccattccctactaaaaggaaccagccatactaatagaaagtagctactagtgtc------aactacactgactccaggactgtgccagggaaactacaagatgaacctaagatatcttgctgtgccagaatgtaggtgctcagaattgatgggtatga-ttaaaagg----ac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1926012 616 +   2316924 GCAAATCTATTTCcaaatagagcaaattaactgcatttcaaaagtataacataaccacattgaaaattcaggaaagaattgacctaagaaaatggtttacacattgttctcattgtaaaaagaaaaagaacagcaagcaaatcttaaactctatgtatcaggaatattttctgtaatgctaaggcaacagcaattctgatattttgtgtgaattttaggattgggaaaatgagagtgtgtgcacctgtgtgttgttggaaccaggttctcactgtgggaaaggaggatggtaaagaatagtactattggtgatgatgggaattagaggcatcagtatgaagttatac--acttaattgtaaaatttctccacagatctctctgctaactgggactagaagaaatgatacctcagatgcaatgagcaaagataattctatatattgattttcaaataccattccctactaaaaggaaccagccatactaatagaaagtagctactagtatc------aactacactgactccaggactgtgccagggaaactactagatgaacctaagatatcttgctgtgccagaatgtaggtgctcagaattgatgggtatga-ttaaaagg----ac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1798829 616 -   3067355 GCAAATCTATTTCCAaatagagaaaattaactgcatttcaaaagtataacataaccacattgaaaattcaggaaagaattgacctaagaaaatggtttacacattgttctcaatgtaaaaagaaaaagaacagcaagcaaatcttaaactctatgtatcaggaatattttctgtaatgctaaggcaacagcaactctgatattttgtgtgaattttaggattgggaaaatgagagtgtgtgcacctgtgtgttgttggaagcaggttctcactgtgggaaaggaggatggtaaagaatagtcctattggtgatgatgggaatcagaggcatcagtacgaagttacac--acttaattgtaaaatttctccacagatctctctgctaattgggactagaagaaatgatacctcagatgcaatgagcaaagataattctatgtattgattttcaaataccattccctactaaaaggaaacagccatactaatagaaagtagctactagtgtc------aactacactgactccaggactgtgccaaggaaactacaagatgaacctaagatatctcgctgtgccagaatataagtgctcagaattgatgggtatga-ttaaaagg----ac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171341613 599 - 171630274 GCAAATCTATTTGCAGATAGAGCAAACTAACCCCATTTCAAAAGAATAACGTAACCACATTGAAAATACAGGAAAGAATTGATCTAAGAAAAGGGTTTACACATGGTTCTCATTGTAAAAGGAAAAAGAACAGCAAGCACATCTCAAACTCTATGGATCAGGGTTATTTTCTGTAATGCTCA-GCTGCAGCAACTCTGACATTCTGCGTGAATTTTAGGACTGGGAAAATGAGTGTGTGTGTGCCTATGTGTTGTTGGAACAAGGCACTCACTGTGGGAA---AGGAAGATAAAGAACAGTCCTGTTGG---TGATGTGGATTAGAGGCACCGGTATGAAATTACACATACTGAATTGCAAAATTTCTCCACTGATCTCTCCgct-----------------atgagatctcagaagcaatgagcaaagatgacactatatcttgattttcaaataccattccctactaaaaggaaccagagatactaatagaaactagctacttgtgtc------agctacagtgactccaggactgtgccagagaaactacaagatgaacctaagataccttgctgtgccagaatgtaggtgctcagaattgatgggtatgatttaaaaggacacac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            174727 602 -    375362 GCAAATCTATTGGcaaatagagcaaactaaccgcatttcaaaagaataacatgaccacattgaaaacacaggaaagaattgatctaagaaaatggtttacacattgttctcattgtaaaaagaaaaagaacagcaagcaaatctcaaactctatgtatcaggattattttctgtaatgctaaggctgcagcaactctgataatttgtgtgaattttcgcattgggaaaatgagtgtgtgtgtgcctatgtgttgttggaacaaggctctcactgcgggaaaggaggaaggtaaagaacagtcctgttggtgctgatgcggattagacgcaccagtatgaaattatacatacttaattgcaaaatttctccactgatctctccgct-----------------atgatatctcagaagcaatgagcaaagatgacactgtatcttgattttcaaataccattccctactaaaaggaaccagagatactaatagaaactagctacttgtgtc------aactacaatgactccaggactgtgccagagaaactacaagatgagcctaacatatcttgctgtgccagaatgtaggcgctcaaaattgatgggtatgatttaaaagg----ac
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      166159 602 -    373274 GCAAATCTATTTGCaaatagagcaaactaactgcatttcaaaagaataacataaccacattgaaaatacaggaaagaattgatctaagaaaatggtttacacattgttctcattgtaaaaagaaaaagaacagcaagcaaatcttaaactctatgtatcaggattattttctgtaatgctaaggctgcaaaaactctgataatttgtgtgaattttagcattgggaaaatgagtgtgtgtgtgcctatgtgttgttggaacaaggctctcactgtgggaaaggaggaaggtaaagaacagtcctgttggtgatgatgcagattagaggcaccagtatgaaattatacatacttaattgcaaaatttctccattgatctctccgct-----------------acgatatctcagaagcaatgagcaaagatgatactatatcttgattttcaaataccattccctactaaaagtaacgagagatactaatagaaactagctacttgtgtc------agctacaatgattccaggactgtgccagagaaactacaagatgaacctaagatatcttaatgtgccagaatgtaggtgctcagaattgacgggtatgatttaaaagg----ac
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      111883 606 -    285216 GCAAATCTATTtgcaaatagagcaaactaaccgcatttcaaaagaataacataaccacattgaaaatacaggaaagaattgatctaagaaaatggtttacacattgttctcattgtaaaaagaaaaagaacagcaagcaaagcttaaactctatgtatcaggattattttctgtaatgctaaggctgcagcaactctgatattctgtgtgaattttaggattgggaaaatgagtgcgtgtgtgcctatgtgttgttggaacaaggctctcactgcaggaaaggaggaaggtaaagaacagtcctgttggtgccaatgcagattagaggcaccagtatgaaattatacatacttaattgcaaaatttc-ccactgatctctccgct-----------------atgagatctcagaagcaatgagcaaagatgacactatatcttgattttcaaataccattccc-aataaaaggaaccagagatactaatagaaactagctactgttgactacaatgactacaatgactccaggactgtgccagagaaactacaggatgaacctaagatatcttgctgtgccagaatgtaggtgctcagaattgatgggtatgatttaaaagg----ac
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25853030 244 +  26524999 I
e otoGar3.GL873742           1488286 3828 -   2232465 I

a score=2046522.000000
s hg38.chr6_GL000254v2_alt     93889 190 +   4827813 agagaagccagcttgaaagggatctcaatggccaaatctgacacattttgagcattaatgatgacaataagtgattatcaatcttgggaacttaaacacataaatatggaagatgggaagattttccttacagttgtgtgccaagtgataaatgtggaagtaaggataaaattagaaaatcctcatttgg
s panTro5.chr6              29064460 190 + 175400573 acagaagccagcttgaaatggatctcaatggccaaatctgacacattttgagcattaatgatgacaataagtgattatcaatcttgggaacttaaacacataaatatggaagatgggaagattttccttacagttgtgtgccaagtgataaatgtggaagtaaggataaaattagaaaatcctcatttgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29308452 190 + 173848474 acagaagccagcttgaaatggatctcaatggccaaatctgacacattttgagcattaatgatgacaataagtgattatcaatcttgggaacttaaacacataaatatggaagatgggaagattttccttacagttgtgtgtcaagtgataaatgtggaagtaaggataaaattagaaaatcctcatttgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5108600 190 +   6154872 acagaagccagcttgaaagggatctcaatggccaaatctgacacattttgagcattaatgatgacaataagtgattatcaatcttgggaacttaaacacataaatatggaagatgggaagattttccttacagttgtatgccaagtgataaatgtggaagtaaggataaaattagaaaatcctcatttgA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74114369 190 + 122973662 acagaagccagcttgaaagggatctcaatggccaaatctgacacattttgagcattaatgatgacaataagtgattatcaatcttgggaacttaaacaaataaatatggaagatgggaagattttccttacacttgtatgccaagtgatgaatgtggaagtaaggataaaattagaaaatcctcatttgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29290987 190 + 172585720 acagaagccagcttgaaagggatctcaatgaccaaatctgacacattttgagcattaatgatgacaataagtgattatcaatcttgggaacttaaacgaataaatatggaagatgggaagattttccttacagttgtatgccaagtggtaaatgtggaagtaaggataaaattagaaaatcctcatttgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28940821 190 - 170955103 acagaagccagcttgaaagggatctcaatggccaaatctgacacattttgagcattaatgacgacaataagtgattatcaatcttgggaacttaaacgaataaatatggaagatgggaagattttccttacagttgtatgccaagtggtaaatgtggaagtaaggataaaattagaaaatcctcatttgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1918881 190 -   2996164 acagaagccagcttgaaagggatctcaatgaccaaatctgacacattttgagcattaatgatgacaataagtgattatcaatcttgggaacttaaacgaataaatatggaagatgggaagattttccttacagttgtatgccaagtggtaaatgtggaagtaaggataaaattagaaaatcctcatttgg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1800268 190 -   2157725 acagaagccagcttgaaagggatctcaatggccaaatctgacacattttgagcattaatgatgacaataagtgattatcaatcttgggaacttaaacaaataaatatggaagatgggaagattttccttacagttgtatgccaaatgataaatgtggaagtaaggataaaattcaaaaatcctcatgtgg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28258763 190 -  71996105 acagaagccagtttgaaagggatctaaatggccaaatctgacacattttgagcattaatgatgacaataagtgattatcaatcttgggaacttaaacaaataaatatggaagatgggaagattttccttacagttgtatgccaagtggtaaatgtggaagtaaggataaaattagaaaatcctcatttgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1926628 190 +   2316924 acagaagccagcttgaaagggatctcaatggccaaatctgacacattttgagcattaatgatgacaataagtgattatcaatcttgggaacttaaacaaataaatatggaagatgggaagattttccttacagttgtatgccaagtgataaatgtggaagtaaggataaaattcaaaaatcctcatttgg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1799445 190 -   3067355 acagaagccagcttgaaagggatctaaatggccaaatctgacacattttgagcattaatgatgacaataagtgattatcaatcttgggaacttaaacaaataaatatggaagatggtgagattttccttacagttgtatgccaagtgataaatgtggaagtaaggataaaattagaaaatcctcatttgg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171342212 190 - 171630274 acagaagccagcttgaaagggatctcaatggccaaagctgacacatttggagcatcaatgatgacggtaaatgattatcagtcttggtaaactaaacaaataaatacagaagaggggaagattttcctgacagtggtatgccaagtgataaatgtggaagtaaggagaaactgagaaaatccccattcag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            175329 190 -    375362 aaagaagccagcttgaaacggatctcaatggccaaatctgacacattttgagcatcaatgatgacggtaaatgattatcaatcttggcaaactaaacaaataaatacggaagatgggaagagtttcctgacagtggtatgccaattgataaaggtggaagtaaggataaaattagaaaatccccatttgg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      166761 190 -    373274 acagaagccaggttgaaagggatctcaatggccaaatctgacacattttgagcatcaatgttgacggtaaatggttgtcaatcttggtaaactaaacaaataaatacggaagatgggaaaactttcctgacagtggtatgtcaagtgacaaaggtggaagtaaggataaaattagaaaatccccatttgg
i cebCap1.NW_016108108v1   C 0 I 210
s aotNan1.NW_018494050v1      112489 190 -    285216 acagaagccaccttgaaagggatctcaatggccaaagctgacacattctgagcatcagtgatgacggtaaatgattatcaatcttggtaaattaaacaaataaataccgaagatgggaagattttcccgacagtggtatgccaagtgataaatgtggaagtaaggataaaattagaaaatccccatttgg
i aotNan1.NW_018494050v1   C 0 I 210
s canFam3.chr35             25853274 182 +  26524999 aaagaagccaacttgaagggcctctcactcgtcaaattggacatactctgagcatgaataatgac---aagtgattataatccttggatacttaaataaataaatatggaagaagggaaaattttccttatggtggcgtgtgaactgtaaaa-----aagtaataataaggttagaaactcaccaccttg
i canFam3.chr35            I 244 I 139
e otoGar3.GL873742           1488286 3828 -   2232465 I

a score=13572.000000
s hg38.chr6_GL000254v2_alt     94079 2 +   4827813 gc
s panTro5.chr6              29064650 2 + 175400573 gc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29308642 2 + 173848474 gc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5108790 2 +   6154872 gc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74114559 2 + 122973662 gc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29291177 2 + 172585720 gc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28941011 2 - 170955103 gc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1919071 2 -   2996164 gc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1800458 2 -   2157725 gc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28258953 2 -  71996105 gc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1926818 2 +   2316924 gc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1799635 2 -   3067355 gc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171342402 2 - 171630274 gg
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            175519 2 -    375362 ac
i saiBol1.JH378348         C 0 I 940
e canFam3.chr35             25853456 139 +  26524999 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      112679 210 -    285216 I
e cebCap1.NW_016108108v1      166951 210 -    373274 I

a score=782403.000000
s hg38.chr6_GL000254v2_alt     94081 129 +   4827813 tgggcgtggtggctcacgtctgtaattccagcactttgggaggccgaggc-aggggg-atcacctgaggttgggagttcgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaa
s panTro5.chr6              29064652 129 + 175400573 tgggcgtggtggctcacgtctgtaattccagcactttgggaggccgaggc-aggggg-atcacctgaggttgggagtttgagaccagcctgaccaacatggagaaaccccgtctctattaaaaatacaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29308644 129 + 173848474 tgggcgtggtggctcacgtctgtaattccagcactttgggaggccgaggc-aggggg-atcacctgaggttgggagtttgagaccagcctgaccaacatggagaaaccccgtctctattaaaaatacaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5108792 116 +   6154872 tgggcatggtggctcacgtctgtaattccagcacttt--------------aggggg-atcacctgaggttgggagttcgagaccagcctgaccaacatggagaaaccccgtccctactaaaaatacaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74114561 130 + 122973662 cgggcatggtggctcacgcctgtaattccagcactttgggaggccgaggc-agggggaatcacctgaggttgggagttcaagaccagcctgaccaacatggagaaaacccgtctctactaaaaatacaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29291179 130 + 172585720 cgggcatggtggcttacacctgtaattccagcactttgggaggccaagtt-gcgggggatcacctgaggctgggagttcgagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaaa
i rheMac8.chr4             C 0 I 86
s macFas5.chr4              28941013 130 - 170955103 cgggcatggtggcttacacctgtaattccagcactttgggaggccaagtt-gcgggggatcacctgaggctgggagttcgagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaaa
i macFas5.chr4             C 0 I 86
s macNem1.NW_012011356v1     1919073 130 -   2996164 cgggcatggtggcttacacctgtaattccagcactttgggaggccaagtt-gcgggggatcacctgaggctgggagtttgagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaaa
i macNem1.NW_012011356v1   C 0 I 8052
s cerAty1.NW_012001495v1     1800460 131 -   2157725 cgggcgtggtgccttacacctgtaattccagcactttgggaggccaagttggggggggatcacctgaggttgggagttcgagaccagcctgaccaacatggagaatcctcatctctactaaaaatacaaaa
i cerAty1.NW_012001495v1   C 0 I 75
s chlSab2.chr17             28258955 130 -  71996105 cgggcatggtggcttacacctgtaattccagcactttgggaggccaagtt-gggggggatcacctgaggctgggagttcgagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaaa
i chlSab2.chr17            C 0 I 86
s manLeu1.NW_012104165v1     1926820 130 +   2316924 caggcgtggtgccttacacctgtaattccagcactttgggaggccaagtt-gggggggatcacctgaggttgggagttcgagaccagcctgaccagcatggagaatccccatctctactaaaaatacaaaa
i manLeu1.NW_012104165v1   C 0 I 75
s colAng1.NW_012115566v1     1799637 131 -   3067355 cgggcatggtggcttacacctgtaattccagcactttaggaggccaagttgggggggaatcacctgaggttgggagtttgagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaaa
i colAng1.NW_012115566v1   C 0 I 86
s calJac3.chr4             171342405 127 - 171630274 cgagcgtggtgattcaagcctgtaatcccagcactttgggaggccgaggc-tggtgg-atcac--gaggtcaagagatcgagaccatcctggtcaatatggtgaaaccccgtcactactaaaaatacaaaa
i calJac3.chr4             I 1 I 84
e canFam3.chr35             25853456 139 +  26524999 I
e saiBol1.JH378348            175521 940 -    375362 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      112679 210 -    285216 I
e cebCap1.NW_016108108v1      166951 210 -    373274 I

a score=215160.000000
s hg38.chr6_GL000254v2_alt     94210 39 +   4827813 Ctgtggtgagccgagatcacaccattgcactccagcctg
s panTro5.chr6              29064781 39 + 175400573 Ctgtggtgagccgagatcacaccattgcactccagcctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29308773 39 + 173848474 Ctgtggtgagccgagatcacaccattgcactccagcctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5108908 39 +   6154872 ttgtggtgagctgagatcacaccattgcactccagcctg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74114691 39 + 122973662 ttgtggtgagccgagatcgcaccattgcacgctagcctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29291395 39 + 172585720 ttgcggtgagccaagatcgcaccattgtactccagcctg
i rheMac8.chr4             I 86 C 0
s macFas5.chr4              28941229 39 - 170955103 ttgcggtgagccaagatcgcaccattgtactccagcctg
i macFas5.chr4             I 86 C 0
s cerAty1.NW_012001495v1     1800666 39 -   2157725 ttgcggtgagccaagatcgaaccattgcactccagcctg
i cerAty1.NW_012001495v1   I 75 C 0
s chlSab2.chr17             28259171 39 -  71996105 ttgtggtgagccaagatcgcaccattgcactccagcctg
i chlSab2.chr17            I 86 C 0
s manLeu1.NW_012104165v1     1927025 39 +   2316924 ttgcggtgagccaagatcgcaccattgcactccagcctg
i manLeu1.NW_012104165v1   I 75 C 0
s colAng1.NW_012115566v1     1799854 39 -   3067355 ttgcaatgggccaagatcacaccattgcactccagcctg
i colAng1.NW_012115566v1   I 86 C 0
s calJac3.chr4             171342616 39 - 171630274 ttgcggtgagccgagatcgcgccattgcactccagcctg
i calJac3.chr4             I 84 C 0
e canFam3.chr35             25853456 139 +  26524999 I
e saiBol1.JH378348            175521 940 -    375362 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      112679 210 -    285216 I
e cebCap1.NW_016108108v1      166951 210 -    373274 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=198193.000000
s hg38.chr6_GL000254v2_alt     94249 54 +   4827813 ggcaagaagagcgaaattct----------atctcaa--aaaa-aataataataat---------aa--------taataaata
s panTro5.chr6              29064820 52 + 175400573 ggcaagaagagcgaaattct----------atctc----aaaa-aataataataat---------aa--------taataaata
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29308812 55 + 173848474 ggcaagaagagcgaaattct----------atctcaa--aaaataataataataat---------aa--------taataaata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5108947 49 +   6154872 ggcaagaagagcgaaattct----------atctcaa--aaaa-a-----aataat---------aa--------taataaata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74114730 62 + 122973662 ggcaagaagagcgaaattcc----------gtctcaa--aaat-aataataataat---------aaaataaaaGTAAAAaata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29291434 54 + 172585720 ggcaagaagaatgaaattcc----------gtctcaa--taat-agtaataataat---------ag--------taaataata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28941268 54 - 170955103 ggcaagaagaatgaaattcc----------gtctcaa--taat-agtaataataat---------ag--------taaataata
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1800705 54 -   2157725 ggcaagaagagtgaaattcc----------atctcaa--taat-aataataataat---------aa--------taataaata
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28259210 48 -  71996105 ggcaagaagagtgaaattcc----------atctcaa--taat-aataataataat-----------------------aaata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1927064 63 +   2316924 ggcaagaagagtgaaattcc----------atctcaa--taat-aataataataataataataataa--------taaaaaata
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1799893 52 -   3067355 ggcaagaagagtgaaattcc----------atctcaa--taat-aataataata-----------aa--------taaataata
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171342655 54 - 171630274 ggtaaaaaaagtgaaactct----------gtctcaa--aaaa-aaaaagaaagaa---------ag--------aaagaaaga
i calJac3.chr4             C 0 C 0
s canFam3.chr35             25853595 65 +  26524999 gataaggggaa-gaaaccctggtgaacacaaccttaaccaagt-gattaaagcaaa---------ca--------tcactaata
i canFam3.chr35            I 139 C 0
e saiBol1.JH378348            175521 940 -    375362 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      112679 210 -    285216 I
e cebCap1.NW_016108108v1      166951 210 -    373274 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=81658.000000
s hg38.chr6_GL000254v2_alt     94303 10 +   4827813 atgagaaaaa
s panTro5.chr6              29064872 10 + 175400573 atgagaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29308867 10 + 173848474 atgagaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5108996 10 +   6154872 atgagaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74114792 10 + 122973662 gtgagaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29291488 10 + 172585720 atgagaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28941322 10 - 170955103 atgagaaaaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1800759 10 -   2157725 atGAGAAAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28259258 10 -  71996105 atgagaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1927127 10 +   2316924 atGAGAAAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1799945 10 -   3067355 atgagaaaaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171342709  8 - 171630274 --aagaaaga
i calJac3.chr4             C 0 I 276
s cebCap1.NW_016108108v1      167161 10 -    373274 atgagaaaga
i cebCap1.NW_016108108v1   I 210 C 0
s aotNan1.NW_018494050v1      112889 10 -    285216 atgggaaaca
i aotNan1.NW_018494050v1   I 210 C 0
s canFam3.chr35             25853660 10 +  26524999 atgggaaaaa
i canFam3.chr35            C 0 C 0
e saiBol1.JH378348            175521 940 -    375362 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=60424.000000
s hg38.chr6_GL000254v2_alt     94313 7 +   4827813 ctgacat
s panTro5.chr6              29064882 7 + 175400573 ctgacat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29308877 7 + 173848474 ctgacat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5109006 7 +   6154872 ctgacat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74114802 7 + 122973662 ctgacat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29291498 7 + 172585720 ctgacat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28941332 7 - 170955103 ctgacat
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1800769 7 -   2157725 CTgacat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28259268 7 -  71996105 ctgacat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1927137 7 +   2316924 CTgacat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1799955 7 -   3067355 ctgacat
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      167171 7 -    373274 ctgacat
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      112899 7 -    285216 ctgacat
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25853670 7 +  26524999 ctgacat
i canFam3.chr35            C 0 C 0
e saiBol1.JH378348            175521 940 -    375362 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e calJac3.chr4             171342717 276 - 171630274 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=1806910.000000
s hg38.chr6_GL000254v2_alt     94320 228 +   4827813 cacatgcctcttggtgtgatagagggtaacatgatttctgtgac-----------atttccatgacctgaatgtaacc--atgactacacaaattaagaaacattcaacaaaaccactggcatatgctcttcaaaaacatattca-----tgaaagacaagaagattaagaatctgttccaaagtgaaggagactgaaa--------------------agtcaagac--aactagattcatatgtgattctgaaatggcacctagtt
s panTro5.chr6              29064889 228 + 175400573 cacatgcctcttggtgtgatagagggtaacatgatttctgtgac-----------atttccatgacctgaatgtaacc--atgactacacaaatcaagaaacattccacaaaaccactggcatatgctcttcaaaaacatattca-----tgaaagacaagaagattaagaatctgttccaaagtgaaggagactgaaa--------------------agtcaagac--aactagattcatatgtgattctgaaatggcacctagtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29308884 228 + 173848474 cacatgcctcttggtgtgatagagggtaacatgatttctgtgac-----------atttccatgacctgaatgtaacc--atgactacacaaatcaagaaacattccacaaaaccactggcatatgctcttcaaaaacatattca-----tgaaagacaagaagattaagaatctgttccaaagtgaaggagactgaaa--------------------agtcaagac--aactagattcatatgtgattctgaaatggcacctagtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5109013 228 +   6154872 cacatgcctcttggtgtgatagagggtaacatgatttctgtgac-----------atttccatgacctgaatgtaacc--atgactacacaaattaagaaacattccacaaaaccactggcatatgctattcaaaaacatattca-----tgaaagacaagaagattaagaatctgttccaaagtgaaggagactgaaa--------------------agtcaagac--aactagattcatatgtgattctgaaatggcacctagtt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74114809 228 + 122973662 cacatgcctcttggtgtgatagagggtaacatgatttctgtgac-----------atttccataacctgaatgtaatc--atgactacataaattaagaaacattccacaaaaccactggcatatgctcttcaaaaacatattca-----tgaaagacaagaagattaagaatatgttccaaggtgaaggagactgaaa--------------------cgtcaagac--aactagattcatatgtgattctgaaatggcacctagtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29291505 233 + 172585720 cacatgcctcttggtgtgatagagggtaacatgatttctgtgac-----------atttccataacctgaatctaacc--atggctacacaaattaagaaacattccacaaaaccacaggcatacgctcttaaaaaacatattcatgtcgtgaaagacaagaagattaagaatctgttccaaagtgaaggagactgaaa--------------------agtcaagac--aactagattcatatgtgattctgaaatggcatctagtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28941339 233 - 170955103 cacatgcctcttggtgtgatagagggtaacatgatttctgtgac-----------atttccataacctgaatctaacc--atggctacacaaattaagaaacattccacaaaaccacaggcatacgctcttaaaaaacatattcatgtcgtgaaagacaagaagattaagaatctgttccaaagtgaaggagactgaaa--------------------agtcaagac--aactagattcatatgtgattctgaaatggcatctagtt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1800776 233 -   2157725 cacatgcctcttggtgtgatagagggtaacatgatttctgtaac-----------atttccataacctgaatctaacc--atggctacacaaattaagaaacattccacaaaaccacaggcatatgctcttcaaaaacatattcatgttgtgaaagacaagaagattaagaatctgttccaaagtcaaagagactgaaa--------------------agtcaagac--aactagattcatgtgtgattctgaaatggcacctagtt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28259275 233 -  71996105 cacatgcctcttggtgtgatagagggtaacatgatttctgtgac-----------atttccataacctgaatctaacc--atggctacacaaattaagaaacattccacaaaaccacaggcatatgctcttcaaaaacatattcatgtcgtgaaagacaagaagactaagaatctgttccaaagtgaaggagactgaaa--------------------agtcaaaac--aactagattcatgtgtgattctgaaatggcacctagtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1927144 233 +   2316924 cacatgcctcttggtgtgatagagggtaacatgatttctgtgac-----------atttccataacctgaatctaacc--atggctacacaaattaagaaacatttcacaaaaccacaggcatatgctcttcaaaaacatatttatgtcgtgaaagacaagaagattaagaatctgttccaaagtcaaggagactgaaa--------------------agtcaagac--aactagattcatgtgtgattctgaaatggcacctagtt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1799962 233 -   3067355 cacatgcctcttggtgtgatagaggataacatgatttctgtgac-----------ctttccataacctgaatctaacc--atggctacacaaattaagaaacattccacaaaaccacaagcatatgctcttcaaaaacatattcatgtcgtgaaagacaagaagattaagaatctgttccaaagtgaaggagactgaaa--------------------agtcaagac--aactagattcatgtgtgattctgaaatggcacctagtt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171342993 262 - 171630274 cacatgcccctcggtgtgacagagagtaacctgatttctgtgacatttctccc-aatttccacaacctgaatctaacc--aggactacacaagtcaagaaaaattccagaaaaccacaggcatatgctcttcaaaaacacagtaatgtcatgaacgacaagaag---aagaatctgctccgaagtgaaggagactgaaaactccgactgaatctatatgaatctagactgaactagattcatatgtgattctgagatggaacgtagtg
i calJac3.chr4             I 276 C 0
s cebCap1.NW_016108108v1      167178 240 -    373274 cacatgcctctcggtgtgatagagggtaacatgatttctgtgacatttctccc-aatttccacaaccagattctaacc--atgactacacaagtcaagaaaaattccacaaaaccacaggcatatgctcctcaaaaacatagtaatgtcatgaaagacaagacg---aaaaatctgttccaaagtgaaggagactgaaa--------------------agtcaagac--aactagattcatatgtgattctgaaatggaacctagtt
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      112906 242 -    285216 ca-acgcctctcggtgcgatagagggtaacatgatttctgtgacatttctccc-aatttccacaaccagaatctaacc--atgactacacaagtcaagaaacattccacaaaaccacaggcatatgctcttcaaaaacacagtaatgtcatgcaggacaagaagacaaagaatctgttccaaagtgaaggagactgaaa--------------------agtcaagac--agctagattcatatgtgattctgacatggaacctagtt
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25853677 229 +  26524999 cgcatgcctcctggtgtgttggagggaaataccagttctgtgatactcatcccaaatattcacaatctgagtctggtctaatcacaacataaattgaaaaacattttacaaaatcattggcatatgatgttcagaaaca-----------tgaaaaacaagaagcttgagaatctattccagattttaaaagactaaag--------------------aat--------aactaaattcataagtgatgctgaaattgaccctagTT
i canFam3.chr35            C 0 I 120
e saiBol1.JH378348            175521 940 -    375362 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=291427.000000
s hg38.chr6_GL000254v2_alt     94548 41 +   4827813 tgggagagaaattcctataaaagattttattgatacaatta
s panTro5.chr6              29065117 41 + 175400573 tgggagagaaattcctataaaagattttattgatacaatta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29309112 41 + 173848474 tgggagagaaattcctataaaagattttattgatacaatta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5109241 41 +   6154872 tgggagagaaatttctataaaagattttattgatacaatta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74115037 41 + 122973662 tgggagagacatttctataaaagattttattgacacaatta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29291738 41 + 172585720 tgggagaaaaatttctataaaagatttcattgatatgattt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28941572 41 - 170955103 tgggagaaaaatttctataaaagatttcattgatatgattt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1801009 41 -   2157725 tgggagaaaaatttctataaaagattttattgatatgattt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28259508 41 -  71996105 tgggagaaaaatttctataaaagattttattgatatgattt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1927377 41 +   2316924 tgggagaaaaatttctataaaagattttattgatatgattt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1800195 41 -   3067355 tgggagaaaaatttctataaaatattttattgatatgattt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171343255 40 - 171630274 tgggagataaatttctat-aaagactttatttgtatgatta
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      167418 40 -    373274 tgggagataaatttctat-aaagattttatttgtacaatta
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      113148 39 -    285216 cgggagataaa-ttctat-aaagattttatttctacaatta
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25854026 41 +  26524999 tgggatagaaatttctataaaatattttgTTAGTAAAATTA
i canFam3.chr35            I 120 I 203
e saiBol1.JH378348            175521 940 -    375362 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=703503.000000
s hg38.chr6_GL000254v2_alt     94589  88 +   4827813 aaatttttatagactgtatattaga---------------------gaatactattttatcaatgttaagttctctaaatttgataattgtgctgtggtaagaaattga
s panTro5.chr6              29065158  88 + 175400573 aaatttttatagactgtatattaga---------------------gaatactattttatcaatgttaagttctctaaatttgataattgtgctgtggtaagaaattga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29309153  88 + 173848474 aaatttttatagactgtatattaga---------------------gaatactattttatcaatgttaagttctctaaatttgataattgtgctgtggtaagaaattga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5109282  87 +   6154872 aaatttttatagactgtatattaga---------------------gaatactattttatcaacgttaagttctctaaatttgataatt-tgctgtggtaagaaattga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74115078  88 + 122973662 aaatttttatagactgtatattaga---------------------taatactgttttatcaatgttaagttcactaaatttgataattgtgctctggtaagaaattga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29291779  88 + 172585720 aaatttatatagactgtatattaga---------------------taatactattttatctatgttaagttcactaaatatgataattgtgctgtggtaagaaattga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28941613  88 - 170955103 aaatttatatagactgtatattaga---------------------taatactattttatctatgttaagttcactaaatttgataattgtgctgtggtaagaaattga
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1801050  88 -   2157725 aaatttgtatagactgtatattaga---------------------taatactattttatcaatcttaagttcactaaatttgataattgtgctgtggtaagaaattga
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28259549  88 -  71996105 aaatttgtatagactgtatattaga---------------------taatactattttatcaatgttaagttcactaaacttgataattgtgctgtggtaagaaattga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1927418  88 +   2316924 aaatttgtatagactgtatattaga---------------------taatactattttatcaatcttaagttcactaaatttgataattgtgctatggtaagaaattga
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1800236  88 -   3067355 aaatttgtatagactgtatattaga---------------------taatactattttatcaatgttaagttcactaaatttgataattgtgctgtggtAAGAAATTGA
i colAng1.NW_012115566v1   C 0 I 385
s calJac3.chr4             171343295  88 - 171630274 aactttttatagactgtatagtaga---------------------taatactatttcatcaatattgagtttacagaatttgatcattgtgctgtggttagaaactga
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      167458  88 -    373274 aattttttatagactgtatattaga---------------------taatactatttcatcaatattaagtttactgaatttgataattgtgctgtggtaagaaattga
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      113187  88 -    285216 aattttttatagactgtatattaga---------------------taatactatttcatcaatattaagtttactgaatttgataattgtgctgtgttaagaaattga
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25854270 109 +  26524999 AAATTAATATAGACTGTATATTAGATAGTAATAGTACTATTACTATtagtactattttgccagtgttaaatctcctgaattcaaagtttgtgctgtggtaaggaactgc
i canFam3.chr35            I 203 C 0
e saiBol1.JH378348            175521 940 -    375362 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=44478.000000
s hg38.chr6_GL000254v2_alt     94677 10 +   4827813 ccttgttctt
s panTro5.chr6              29065246 10 + 175400573 ccttgttctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29309241 10 + 173848474 ccttgttctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5109369 10 +   6154872 ccttgttctt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74115166 10 + 122973662 ccttgttctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29291867 10 + 172585720 cctcattctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28941701 10 - 170955103 cctcattctt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1801138 10 -   2157725 cctcattctt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28259637 10 -  71996105 cctcattctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1927506 10 +   2316924 cctcattctt
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171343383  8 - 171630274 cctt--tctt
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      167546  4 -    373274 cctt------
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      113275  8 -    285216 cctt--tctt
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25854379 10 +  26524999 tcttgctctt
i canFam3.chr35            C 0 C 0
e saiBol1.JH378348            175521 940 -    375362 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e colAng1.NW_012115566v1     1800324 385 -   3067355 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=192567.000000
s hg38.chr6_GL000254v2_alt     94687 29 +   4827813 aggaaatacacattgaagtatttagg-aat---------------------------------------
s panTro5.chr6              29065256 29 + 175400573 aggaaatacacattgaagtatttagg-aat---------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29309251 29 + 173848474 aggaaatacacattgaagtatttagg-aat---------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5109379 29 +   6154872 aggaaatacacattgaagtatttagg-aat---------------------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74115176 29 + 122973662 aagaaatacacattgaagtatttagg-aat---------------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29291877 29 + 172585720 aagaaatacacattgaagtatttagg-aat---------------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28941711 29 - 170955103 aagaaatacacattgaagtatttagg-aat---------------------------------------
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1801148 29 -   2157725 aagaaatacacattgaagtatttagg-aat---------------------------------------
i cerAty1.NW_012001495v1   C 0 I 282
s chlSab2.chr17             28259647 29 -  71996105 aagaaatacacattgaagtatttagg-aat---------------------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1927516 29 +   2316924 aagaaatacacattgaagtatttagg-aat---------------------------------------
i manLeu1.NW_012104165v1   C 0 I 313
s calJac3.chr4             171343391 28 - 171630274 aagaaataaacattgaagtatttagg-AA----------------------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            176461 29 -    375362 aagaaATAAACATTGAAGTATTTAGGAAA----------------------------------------
i saiBol1.JH378348         I 940 C 0
s cebCap1.NW_016108108v1      167550 29 -    373274 aagaaataaacattgaagtatttaggAAA----------------------------------------
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      113283 28 -    285216 aagaaataaacattgaagtatttagg-AA----------------------------------------
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25854389 68 +  26524999 aagaaatatatgctgacatatataAC-AAAAGGATTATGATGGAAGTTTACAATAAAAAGATTGTGGAT
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1488286 3828 -   2232465 I
e colAng1.NW_012115566v1     1800324 385 -   3067355 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=408867.000000
s hg38.chr6_GL000254v2_alt     94716 79 +   4827813 aaaaagatataatgtctgaaaatcattatcaaatagtttagagaaataatttttgtcatat--------gtacatatacataTATat
s panTro5.chr6              29065285 79 + 175400573 aaaaagatataatgtctgaaaatcattatcaaatagtttagagaaataatttttgtcatat--------gtacatatacataTATat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29309280 79 + 173848474 aaaaagatataatgtctgaaaatcattatcaaatagtttagagaaataatttttgtcatat--------gtacatatacataTATat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5109408 78 +   6154872 aaaaagatataatgtctgaaaatcattatcaaatagtttagagaaataa-ttttgtcatat--------gtacataTACATATATat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74115205 79 + 122973662 aaaaagatataatgtctgaaaatcattatcaaatagtttagagaaataatttttgtcatat--------gtatatatacataTATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29291906 87 + 172585720 aaaaagatataatgtctgaaaatcattatcaaatagtttagacaaataaCTTTTGTCatatatagataaatatatatacacacatat
i rheMac8.chr4             C 0 I 12
s macFas5.chr4              28941740 87 - 170955103 aaaaagatataatgtctgaaaatcattattaaatagtttagacaaataaCTTTTGTCatatatagataaatatatatacacacatat
i macFas5.chr4             C 0 I 12
s cerAty1.NW_012001495v1     1801459 83 -   2157725 aaaaagatataatgtctgaaaatcattatcaaatagtttagaggaataaTTTTTGTCATATATAG----ATATatacacacacacat
i cerAty1.NW_012001495v1   I 282 I 12
s chlSab2.chr17             28259676 83 -  71996105 aaaaagatataatgtctgaaaatcattatcaaatagtttagagaaaTATTTTTTGTCATATATAG----ATAAATATacatacacac
i chlSab2.chr17            C 0 I 6
s manLeu1.NW_012104165v1     1927858 83 +   2316924 aaaaagatataatgtctgaaaatcattatcaaatagtttagaggaataaTTTTTGTCATATATAG----ATATatacacacacacat
i manLeu1.NW_012104165v1   I 313 I 12
s calJac3.chr4             171343419 55 - 171630274 AAAAAGATTTAATTTCT------------------TTTTAGAGAAATAACTTTTGTCATAT--------CTATTTATACAT------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            176490 55 -    375362 AAAAAGATTTAATTTCT------------------TTTTAGAGAAATAATTTTTGTCATAT--------ATATTTATATAT------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      167579 55 -    373274 AAAAAGATTTAATTTCT------------------TTTTAGAGAAATAATTTTTGTCatat--------atatttatatat------
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      113311 55 -    285216 AAAAAGATTTAATTTCT------------------TTTTAGAGAAATAATTTTTGTCATAT--------GTATTTATATAT------
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25854457 79 +  26524999 AAAAAGACATACTGTCCAAAAATGGTTTTCAAATCGTTTAGAAAAATAATAATGTCTCtag--------gtagaaaggtagatagat
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1488286 3828 -   2232465 I
e colAng1.NW_012115566v1     1800324 385 -   3067355 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=1101255.000000
s hg38.chr6_GL000254v2_alt     94795 155 +   4827813 --acacaca--------cacatacacacacacacaTATATATTCCACTGTTGCTGATTG----GTTGTTGAGGTGAGGAAGAGGCAAGACCGTGTTCTGAAATAATGTCAAGATTTGGACGATATGTGTTTCTCAAATGGTTCCCATTCCATTTTAAATGTTGCTAGGC
s panTro5.chr6              29065364 155 + 175400573 --acacaca--------cacatacacacacacacaTATATATTCCACTGTTGCTGATTG----GTTGTTGAGGTGAGGAAGAGGCAAGACCGTGTTCTGAAATAATGTCAAGATTTGGACGATATGTGTTTCTCAAATGGTTCCCATTCCATTTTAAATGTTGCTAGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29309359 155 + 173848474 --acacaca--------cacatacacacacacacaTATATATTCCACTGTTGCTGATTG----GTTGTTGAGGTGAGGAAGAGGCAAGACCATGTTCTGAAATAATGTCAAGATTTGGACGATATGTGTTTCTCAAATGGTTCCCATTCCATTTTAAATGTTGCTAGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5109486 155 +   6154872 --acacaca--------cacatacacacacacacaTATATATTCCACTGTTGCGGATTG----GTTGTTGAGGTGAGGAAGAGGTAAGACCGTGTTCTGAAATAATGTCAAGATTTGGACGATATGTGTTTCTCAAATGGTTCCCATTCCATTTTAAATGTTGTTAGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74115284 167 + 122973662 --acacacacacatacgcacatacacacacacacaTATATATTCCACTGTTGCTGATTGTTTAGTTGTTGAGGTGAGGAAGAGGCAAGAAGGTGTTCTGAAATAATGTCAAGATTCGGACGGTATGTGTTTCTCAAATGATTCCCATTCCATTTTAAATGTTGCTAGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29292005 156 + 172585720 --acacaca--------ctcatacacacacacacatatacaTTCCACTGTTGCTGCTTGTTTGGTTGTTGAGGTAAGGAAGAGGCAAGATAGTGTTCTGAA---ATGTCAAGATTTGGACAACATGTGCTTCTCAGATGGCTCCCATTCCATTTTAAACGTTGCTAGGA
i rheMac8.chr4             I 12 C 0
s macFas5.chr4              28941839 156 - 170955103 --acacaca--------ctcatacacacacacacatatacaTTCCACTGTTGCTGCTTGTTTGGTTGTTGAGGTAAGGAAGAGGCAAGATAGTGTTCTGAA---ATGTCAAGATTTGGACAACATGTGCTTCTCAGATGGCTCCCATTCCATTTTAAACGTTGCTAGGA
i macFas5.chr4             I 12 C 0
s cerAty1.NW_012001495v1     1801554 157 -   2157725 --acacaca--------ctc--acacacacacacataTAGATTCCACTGTTGCTGGTTGTTTGGTTGTTGAGGTGAGGAAGAGGCAAGATAGTGTTCTGAAATGATGTCAAGATTTGGACAACATGTGTTTCTCAGATGGTTTCCATTCCATTTTAAATGTTGCTAGGC
i cerAty1.NW_012001495v1   I 12 C 0
s chlSab2.chr17             28259765 155 -  71996105 --acacact--------c----acacacacacacaTATAGATTCCACTGTTGCTGATTGTTTGGTTGTTGAGATGAGGAAGAGGCAAGATAGTGTTCTGAAATGATGTCAAGATTTGGACAATATGTGTTTCTCAGATGGTTCCCATTCCATTTTAAATGTTGCTAGGC
i chlSab2.chr17            I 6 C 0
s manLeu1.NW_012104165v1     1927953 155 +   2316924 --acacaca--------c----acacacacacacaTATAGATTCCACTGTTGCTGATTGTTTGGTTGTTGAGGTGAGGAAGAGGCAAGATAGTGTTCTGAAATGATGTCAAGATTTGGACAATATGTGTTTCTCAGATGGTTTCCATTCCATTTTAAATGTTGCTAGGC
i manLeu1.NW_012104165v1   I 12 C 0
s colAng1.NW_012115566v1     1800709 155 -   3067355 --acacaca--------ctcacacacacacatacaTATAGATTCCACTGTTGCTGATTGTTTGGTTGTTGAGGT----AAGAGGCAAGATAGTGTTCTGAAATGATGTCAAGATTTGGACAATATGTGTTTCTCAGATGGTTCCCATTCCATTTTAAACGTTGCTAGGC
i colAng1.NW_012115566v1   I 385 C 0
s calJac3.chr4             171343474 145 - 171630274 ------------------------CCACACACACGTATATATTTCACTGCTATTGATTGTTTGGCTGTTGAGGTGAGGAAGAGGCAACATGGCATTCTGAAATGATGTGGACATTTGGACAATATGTGCTTCTCAAGTGCTTCTCATTCCACTTTCCATGTTGCTGGGC
i calJac3.chr4             C 0 I 16
s saiBol1.JH378348            176545 145 -    375362 ------------------------CCACACACATGTATATATTTCACTGCTATTGATTGTTTGGTTGTTGAGGTGAGGAAGAGGCAAGATGGCATTCTAAAATGATGTGGAGACTTGGACAATATGTGCTTCTCAAGCTGTTCTCATTCCACTTTCCATGTTGCTGGGC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      167634 145 -    373274 ------------------------ccacatacacgtatatatTTCACTGCTATTGACTGTTTGGTTGTTGAGGAGAGGAAGAAGCAAGATGGCATTCTGAAATGATGTGGAGATTTGGACAATATGTGCTTCTCAAGTAGTTCTCATTCCACTTGCCATGTGGCTGGGC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      113366 121 -    285216 ------------------------CCACACACACGTATATATTTCACTGCTATTGATTGTTTGG------------------------GTGGCATTCTGAAATGATGTGGAGATTTGGACAATTTGTGCTTCTCAAGTGGTTCTCATTCCACTTTCCGTGTTGCTGGGC
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25854536 133 +  26524999 agatagatg---------------atagatagatagatagatT----TGTTGGTTATGG----------------AGGGAGAGGCAC-ACAGTGTTCTGAAATGATCCCAACCTCTGGACAGTTTGTGCTTCTCAGGTGGTTCCCATCCTATTTAAAATATTGCTAAGC
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1488286 3828 -   2232465 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=79496.000000
s hg38.chr6_GL000254v2_alt     94950 12 +   4827813 TGAGACAAAGAT
s panTro5.chr6              29065519 12 + 175400573 TGAGACAAAGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29309514 12 + 173848474 TGAGACAAAGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5109641 12 +   6154872 TGAGACAAAGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74115451 12 + 122973662 TGAGAAAAAGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29292161 12 + 172585720 TGAGACAAAGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28941995 12 - 170955103 TGAGACAAAGAC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1801711 12 -   2157725 TGAGACAAAGAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28259920 12 -  71996105 TGAGACAAAGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1928108 12 +   2316924 TGAGACAAAGAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1800864 12 -   3067355 TGAGACAAAGAC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            176690 12 -    375362 CATGACAAAGAT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      167779 12 -    373274 CATGACAAAGAT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      113487 12 -    285216 CATGACAAAGAT
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25854669 12 +  26524999 AGAAGCTAGAAT
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1488286 3828 -   2232465 I
e calJac3.chr4             171343619 16 - 171630274 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=389518.000000
s hg38.chr6_GL000254v2_alt     94962 45 +   4827813 ACAAATTCCCCAATTT---ATATTAGAATTTAGCAGGTAG-----ttta-----tttt
s panTro5.chr6              29065531 45 + 175400573 ACAAATTCCCCAATTT---ATATTAGAATTTAGCAGGTAG-----ttta-----ttct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29309526 45 + 173848474 ACAAATTCCCCAATTT---ATATTAGAATTTAGCAGGTAG-----ttta-----tttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5109653 45 +   6154872 ACAAATTCCCCAATTT---ATATTAGAATTTAGCAGGTAG-----ttta-----tttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74115463 45 + 122973662 ACAAATTCCCCAATTT---ATATTAGAATTTAGCAGGTGG-----tttg-----tttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29292173 50 + 172585720 ACAAATTCCCCAATTT---ATATTAGAATTTAGCAGGTGGtttgttttg-----tttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28942007 50 - 170955103 ACAAATTCCCCAATTT---ATATTAGAATTTAGCAGGTGGtttgttttg-----tttt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1801723 45 -   2157725 ACAAATTCCCCAATTT---ATATTAGAATTTAGCAGATGG-----ttta-----tttt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28259932 45 -  71996105 ACAAATTCCCCAATTT---TTATTAGAATTTAGCAGATGG-----tttg-----tttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1928120 45 +   2316924 ACAAATTCCCCAATTT---ATATTAGAATTTAGCAGATGG-----ttta-----tttt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1800876 49 -   3067355 ACAAATTCCCCAATTT---ATATTAGAATTTAGCAGATGGtttg-tttg-----ttct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171343635 47 - 171630274 GCAAATTCCCCAATTT---ATACTGGAATTTAGCAGGTGG---gttttg-----tttt
i calJac3.chr4             I 16 C 0
s saiBol1.JH378348            176702 47 -    375362 ACAAATTCCCCAATTT---ATATTGGAATTTAGCAGGTGG---gttttg-----tttt
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      167791 47 -    373274 ACAAATTCCCCGATCT---ATATTGGAATTTAGCAGGTGG---Gttttg-----tttt
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      113499 52 -    285216 ACAAATTCCCCAATTT---CTATTGGAATTTAGCAGGTGA---GTTTTGTTTGCTTTG
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25854681 48 +  26524999 GCAAATTTGCCAATTTATGATATTAAAATTTAGCAGATGT-----TTTC-----TTCT
i canFam3.chr35            C 0 I 1336
e otoGar3.GL873742           1488286 3828 -   2232465 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=3217447.000000
s hg38.chr6_GL000254v2_alt     95007 411 +   4827813 gttttgttttgagacagagttttgctcttgttgcccaggctggagtgcgatgggaggatcttggctcactgcaaactctgccacctgggttcaagcaattctcctgcctcagactcccaagtacctgggattacaggtgtgtgccaccactcccgactaattttgtatttttagtagagatgggggtttcaccatgttggtcaggatggtctcaaacccccaacctgaggtgatctgcccgcctcggcctcccaaagtgttgggattacaggcgtgagccactgtgcgc-------------------------------------------------agccaactcctttataatcttataagaccaccgtaggatatgtggtctgtggtttactaaaatgtcaacatgt---agcacattactgCactcatatcagatttttggcctccagaagtgtgaaa
s panTro5.chr6              29065576 411 + 175400573 gttctgttttgagacagagttttgctcttgttgcccaggctggagtgcgatgggaggatcttggctcactgcaaactctgccacctgggttcaagcaattctcctgcctcagactcccaagtacctgggattacaggtgtgtgccaccacgcccgactaattttgtatttttagtagagatgggggtttcaccatgttggtcaggatggtctcaaacccccaacctgaggtgatctgcccgcctcggcctcccaaagtgttgggattacaagcatgagccactgtgagc-------------------------------------------------agccaactcctttataatcttataagaccaccgtaggatatgtggtctgtggtttactaaaatgtcaacatgt---agcacattactgCACTCatatcagatttttggcctccagaagtgtgaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29309571 410 + 173848474 gttttgttttgagacagagttttgctcttgttgcccaggctggagtgcgatgggaggatcttggctcactgcaaactctgccacctgggttcaagcaattctcctgcctcagactcccaagtacctgggattacaggtgtgtgccaccacgcccgactaattttgtatttttagtagagatggggg-ttcaccatgttggtcaggatggtctcaaacccccaacctgaggtgatctgcccgcctcggcctcccaaagtgttgggattacaagcatgagccactgtgagc-------------------------------------------------agccaactcctttataatcttataagaccaccgtaggatatgtggtctgtggtttactaaaatgtcaacatgt---agcacattactgCACTCatatcagatttttggcctccagaagtgtgaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5109698 411 +   6154872 gttttgttttgagacagagttttgctcttgttgcccaggctggagtgcgatgggaggatcttggctcactgcaaactctgccacctgggttcaagcaattctcctgcctcagactcccaagtacctgggattacaggtgtgtgccaccacgcccgactaattttgtatttttagtagagatgggggtttcaccatgttggtcacgatggtctcaaacccccaacctgaggtgatctgcccgcctcggcctcccaaagtgttgggattgcaggcgtgagccactgtgcgc-------------------------------------------------agccaactcgtttataatcttataagaccaccgtaggatatgtggtctgtggtttactaaaatgtcaacatgt---agcacattactgCACTCatatcagatttttggcctccagaagtgtgaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74115508 411 + 122973662 gttttgttttgagacagagttttgctcttgttgcccaggctggagtgtgatggtaggatctcggctcactgcaaactctgcctcctgggttcaagcaattctcctgcctcagcctcccaagtagctgagattacaggtgtgtgccaccatgcacgactaattttgtatttttagcagagacgggggtttcaccatgttggtcaggctggtctcaaacccttaacctcaggtgatctgcccgccttggcctcccaaagtgttgggattacaggcgtgagccaatgtgcct-------------------------------------------------agccaactcctttataatcttataaggccacggtaggatatgtggtctgtggtttactaaaatgtcaagatgt---agcacattactgCactcatatcagacttttggccaccagaagtgtgaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29292223 411 + 172585720 gttttgttttgagacagagttttgctcttgttgcccaggctgaactccaatgatgggatctcgtctcactgcaaactcggcctacttggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggtgtgcgccaccatccccgactaattttttatttttagtagagatggggatttcaccatgttggtcaggctggtctcaaatccccaacctcaggtgatctgcccttctcagtgtctcaaagtgttgggattacaggtgtaagccactgtgcct-------------------------------------------------ggccagctcctttgtaatcttataagaccaccataggatatgcggtctgtggtttactaaaatgtcaacctgt---agcacattactgTAttcatatcagacttttggcttccagaagtgtgaaa
i rheMac8.chr4             C 0 I 314
s macFas5.chr4              28942057 411 - 170955103 gttttgttttgagacagagttttgctcttgttgcccaggctgaactccaatgatgggatctcgtctcactgcaaactcggcctacttggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggtgtgcgccaccatccccgactaattttttatttttagtagagatggggatttcaccatgttggtcaggctggtctcaaatccccaacctcaggtgatctgcccttctcagtgtctcaaagtgttgggattacaggtgtaagccactgtgcct-------------------------------------------------ggccagctcctttgtaatcttataagaccaccataggatatgcggtctgtggtttactaaaatgtcaacctgt---agcacattactgTAttcatatcagacttttggcttccagaagtgtgaaa
i macFas5.chr4             C 0 I 314
s cerAty1.NW_012001495v1     1801768 409 -   2157725 gttttgttttgagacagagttttgctgttgttgcccaggctgaactccaatggtggggtcttgtctcattgcaaactcggcctacctggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggtgtgcgccaccatccccgactaattttttatttttagtagagacgggaatttcaccatgttggtcaggctggtctcaaacccccaaactcaggtgatctgcctgtctcggcctctc--agtgttgggattacaggtgtaagccactgtgccc-------------------------------------------------ggccagctcctttgtaatcttataagaccactataggatatgcgatctgtggtttactaaaatgtcaacatgt---agcacattactgTactcatatcagacttttggcctccagaagtgtgaaa
i cerAty1.NW_012001495v1   C 0 I 1
s chlSab2.chr17             28259977 409 -  71996105 gttttgttttgagacagagttttgctcttgttgcccaggctgaactccaatggtgggatctcatctcactgcaaactcggcctacctggttcaagcggttctccggcctcagcctcccaagtagctgggattacaggtgtgcgccaccatccccgactaattttttatttttagtagagacgggaatttcaccatgttggtcaggctggtctcaaacccccaacctcaggtgatctgcccgtcttggcctctc--agtgttgggattacaggtgtaagccactgtgcct-------------------------------------------------ggccagctcctttgtaatcttataagaccaccgtaggatatgcggtctgtggtttactaaaatgtcaacatgt---agcacattactgTactcatatcagatttttggcctccagaagtgtgaaa
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012104165v1     1928165 412 +   2316924 gttttgttttgagacagagttttgctgttgttgcccaggctgaactccaatggtgggatcttgtctcattgcaaactcggcctacctggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggtgtgccccaccatccccgactaattttttatttttagtagagacgggaatttcaccatgttggtcaggctggtctcaaacacccaaactcaggtgatctgcctgtctcggcctctc--agtgttgggattacaggtgtaagccactgtgccc-------------------------------------------------ggccagctcctttgtaatcttataagaccactataggatatgcgatctgtggtttactgaaatgtcaacatgtagcagcacattactgTactcatatcagacttttggcctccagaagtgtgaaa
i manLeu1.NW_012104165v1   C 0 I 1
s colAng1.NW_012115566v1     1800925 457 -   3067355 gttttgttctgagacagagttttgctcttcttgcccaggctgaactccaatggcgggatctcatctcactgcaaactcggcctacctggttcaagtgattctcctgcctcagcctcccaagtagc-gggattacaggtgtgtgccaccatccccaactaattttttatttttagtagagaagggaatttcaccatgttggtcaggctggtctcaaatccccagcctcaggtgatctgcctgtctcagcctctc--agtgttgggattacaggtgtaagccactgtgcccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCcagctcctttgtaatcttataagaccaccgtaggatatgcggtctgtggtttactaaaatgtcaacatgt---agcatgttactgTactcatatcagatttttgtcctccagaagtgtgaaa
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chr4             171343682 390 - 171630274 gttttgttttcagacagagattcactcttgttgcccaggctggtgtgca---gtgtgatcttggctcactgcaacatttgcctcctgggttcaagcgattctcccacctcagcctcccaagtagctaggattacaagtgcgcaccaccacacccggctaattctgtatttgtagtagagatgggggtttcaccatgttggtcaggctggtctcgaacccctgacctccggtgatctgcccacttcggcctcccaaagtgttgggattacaggtgtgacccaccactccc-------------------------------------------------g------------------TTGGgagaccaacgtaggatatgtggtctgtggtttacaaaagtgtcattacgt---agcacatgactgTactcataccagacttttggcctccagaagtgtgaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            176749 411 -    375362 gttttgttttgagacagagtttcactcttgttgcccaggctggcgtgcaatggtgtgatcttggctcactgcaacctctgcctcctgggttcaagcgattctcccacctcagcctcccaagtagctaggattacaggtgtgcaccaccacacctggctaattctatatttttagtagagatgggggtttcaccatgttggtcaggctggtctcgaacccctgacctctggtaatctgcccaccttggcctcccaaagtattgggattacaggtgtgagccaccactccc-------------------------------------------------agtcagttcctttaaaattttatgagaccaacgtaggatatgtggtctgtggtttactaaaacgtcattatat---agcacatgactgTactcataccagacttttcgcctccagaagtgtgaaa
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      167838 411 -    373274 gttttgttttgagacagagtttcactctcgttgcccaggctggtgtgcaatggtgcgatcttggctcactgcaacctctgcctcctgggttcaatcgattctgccacctcagcctcccaagtagctaggattacaggtgtgcaccaccacacccggataattctgtatttttagtagagatggggatttcaccatgttggtcaggctggtctccaacccctgacctctggtgatctgcccacgtctgcctcccaaagtgttgggattacaggtgtgagccaccaccccc-------------------------------------------------agtcagttcctttcgaattttatgagaccaacataggatatgtggtctgtggtttactaaaatgtcattatgt---agcacatgactgTACTCATACcagacttttggtctccagaagtgtgaaa
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      113551 407 -    285216 GTTTGGttttgagacagagtttca--cttgttgcccaggctggagtgtggtggtgcaatcttggctcactgcaacctctgcctcctgggttcaaacgattctcccatctcagtctcccaagtagctaggattacaggtgtgtaccaccacacccggctaattctgtatttttagtagagatgggggtttcaccatgttggtcaggctggtctcaaacctgtgacctctggtgatctgcccaccttggcctcccaaagtgttgggattacaggtgtgacccaccactccc-------------------------------------------------agtcagttcctttaaaatttt--gagaccaacgtaggatatgtggtctgtggtttactgaaatgtcattatgt---agcacatgactgTAGTCATACcagacttttggcctccagaagtgtgaaa
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=3600.000000
s hg38.chr6_GL000254v2_alt     95418 1 +   4827813 g
s panTro5.chr6              29065987 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29309981 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5110109 1 +   6154872 g
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74115919 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171344072 1 - 171630274 g
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            177160 1 -    375362 g
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      168249 1 -    373274 g
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      113958 1 -    285216 g
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e colAng1.NW_012115566v1     1801382 1 -   3067355 I
e manLeu1.NW_012104165v1     1928577 1 +   2316924 I
e chlSab2.chr17             28260386 1 -  71996105 I
e cerAty1.NW_012001495v1     1802177 1 -   2157725 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I
e macFas5.chr4              28942468 314 - 170955103 I
e rheMac8.chr4              29292634 314 + 172585720 I

a score=1101085.000000
s hg38.chr6_GL000254v2_alt     95419 145 +   4827813 aataaatttctgttg-ttataagccatctaatttgagataatttgttacagcagccataggaaactaatCAATG--ACAAGCTTATTCTACTCTGCCAACTGCCTTGAGTGGTTTTGAGGCTCATGAAGTCTAAATAACG-TAATATTG
s panTro5.chr6              29065988 145 + 175400573 aataaatttctgttg-ttataagccatctaatttgagataatttgttacagcagccataggaaactaatCAATG--ACAAGCTTATTCTACTCTGCCAACTGCCTTGAGTGGTTTTGAGGCTCATGAAGTCTAAATAACG-TAACATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29309982 145 + 173848474 aataaatttctgttg-ttataagccatctaatttgagataatttgttacagcagccataggaaactaatCAATG--ACAAGCTTATTCTACTCTGCCAACTGCCTTGAGTGGTTCTGAGGCTCATGAAGTCTAAATAACG-TAACATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5110110 145 +   6154872 aataaatttctgttg-ttataagccatctaatttgagataatttgttacagcagccataggaaactaatCAATG--ACAAGCTTATTCTACTCTGCCAACTGCCTTGAGTGGTTTTGAGGCTCATGAAGTCTAAATAATG-TAACATTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74115920 145 + 122973662 aataaatttctgttg-ttataagccacctaatttgagataatttgttacagcagccataggaaactaatCAACG--ACAAGCTTATTCTACTCTGCCAACTGCCTTGAATGGTTTTGAGGCTAATGAAGTCTAAATAATG-TAACATTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29292948 145 + 172585720 aataaatttctgttg-ttataagccacctaatttgggataatttgttacagcagccataggaaactaatCAACG--ACAAGTTTATTCTACTCTGCCTACTGCCTTGAGTGGTTTTGAGGCTCATGAAGTCTAAATAACA-TAACATTG
i rheMac8.chr4             I 314 C 0
s macFas5.chr4              28942782 145 - 170955103 aataaatttctgttg-ttataagccacctaatttgggctaatttgttacagcagccataggaaactaatCAACG--ACAAGTTTATTCTACTCTGCCAACTGCCTTGAGTGGTTTTGAGGCTCATGAAGTCTAAATAACA-TAACATTG
i macFas5.chr4             I 314 C 0
s cerAty1.NW_012001495v1     1802178 146 -   2157725 aataaatttctgttg-ttataagccacctaatttgggatgatttgttacagcagccataggaaactaatCAATG--ACAAGCTTATTCTACTCTGCCAACTGCCTTGAGTGGTTTTGAGGCTCATGAAGTCTAAATAACGTTAACATTG
i cerAty1.NW_012001495v1   I 1 C 0
s chlSab2.chr17             28260387 145 -  71996105 aatgaatttctgttg-ttataagccacctaatttgggataattggttacagcagccataggaaactaatCAACG--ACAAGCTTATTCTACTCTGCCAACTGCCTTGAGTGGTTTTGAGGCTCATAAAGTCTAAATAACG-TAACATTG
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012104165v1     1928578 146 +   2316924 aataaatttctgttg-ttataagccacctaatttgggatgatttgttacagcagccataggaaactaatCAATG--ACAAGCTTATTCTACTCTGCCAACTGCCTTGAGTGGTTTTGAGGCTCATGAAGTCTAAATAACGTTAACATTG
i manLeu1.NW_012104165v1   I 1 C 0
s colAng1.NW_012115566v1     1801383  62 -   3067355 aataaatttctgttg-ttataagccacccaatttgggataatttgttacagtagccataggaa--------------------------------------------------------------------------------------
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chr4             171344073 147 - 171630274 aataaatttctgttg-ttataagccacctaatttgggatgatttgttacagcggccataggaaactaatCAATGACACAAGCTTACTCTACTCCGCCAGCTACCTGGAGTGGTTTTGAGGCTCATGAAGTCTAAATAATG-CAACATTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            177161 143 -    375362 aataaatttctgtgg-ttataagcca-ctaatttgggatgatttgttatagcagccataggaaactaatCAACGGCACAAGCTTATTCTACTCTGCCAGCTGCCTGGAGTGGTTTTGAGGCTCATGAAGTCTA---AATG-CAACATTA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      168250 148 -    373274 aatagatttctgtggtttataagccacctaatttgcgatggtttgttatagcagccataggaaactaatCAACGACACAAGCTTATTCTACTCTGCCAGCTGTCTGAAGTGGTTTTGAGGCTCATGACGTCTAAATAATG-TAACATTA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      113959 147 -    285216 aataaatttctgttg-ttataagccacctaattttggatgatttgttacagcagccatgggaaactaatCAACGACACAAGCTTATTCTACTCTGCCAGCTGCCTGGAGCGGTTGTGAGGCTCATGAAGTCTAAATAATG-CAACATTA
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=28392.000000
s hg38.chr6_GL000254v2_alt     95564 4 +   4827813 AAAT
s panTro5.chr6              29066133 4 + 175400573 AAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29310127 4 + 173848474 AAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5110255 4 +   6154872 AAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74116065 4 + 122973662 AAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29293093 4 + 172585720 AAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28942927 4 - 170955103 AAAT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1802324 4 -   2157725 AAAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28260532 4 -  71996105 AAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1928724 4 +   2316924 AAAT
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171344220 4 - 171630274 AAAT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      168398 4 -    373274 AAAT
i cebCap1.NW_016108108v1   C 0 I 9
s aotNan1.NW_018494050v1      114106 4 -    285216 AAAT
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e saiBol1.JH378348            177304 0 -    375362 C
e otoGar3.GL873742           1488286 3828 -   2232465 I
e colAng1.NW_012115566v1     1801445 0 -   3067355 C
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=24429.000000
s hg38.chr6_GL000254v2_alt     95568 5 +   4827813 TAACA
s panTro5.chr6              29066137 5 + 175400573 TAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29310131 5 + 173848474 TAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5110259 5 +   6154872 TAGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74116069 5 + 122973662 TAGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29293097 5 + 172585720 TACCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28942931 5 - 170955103 TACCA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1802328 5 -   2157725 TACCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28260536 5 -  71996105 TACCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1928728 5 +   2316924 TACCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1801445 4 -   3067355 -acca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171344224 5 - 171630274 TACCA
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1      114110 5 -    285216 TACCG
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e saiBol1.JH378348            177304 0 -    375362 C
e otoGar3.GL873742           1488286 3828 -   2232465 I
e cebCap1.NW_016108108v1      168402 9 -    373274 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=31218.000000
s hg38.chr6_GL000254v2_alt     95573 5 +   4827813 TCttg
s panTro5.chr6              29066142 5 + 175400573 TCttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29310136 5 + 173848474 TCttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5110264 5 +   6154872 TCttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74116074 5 + 122973662 TCttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29293102 5 + 172585720 TCttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28942936 5 - 170955103 TCttg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1802333 5 -   2157725 TCttg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28260541 5 -  71996105 TCttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1928733 5 +   2316924 TCttg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1801449 5 -   3067355 TCttg
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018494050v1      114115 5 -    285216 TCTTG
i aotNan1.NW_018494050v1   C 0 I 1
e canFam3.chr35             25854729 1336 +  26524999 I
e saiBol1.JH378348            177304 0 -    375362 C
e otoGar3.GL873742           1488286 3828 -   2232465 I
e cebCap1.NW_016108108v1      168402 9 -    373274 I
e calJac3.chr4             171344229 0 - 171630274 C
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=1106817.000000
s hg38.chr6_GL000254v2_alt     95578 242 +   4827813 gcaaaattcaacagcccttcatgctaaaaactctcaataaactaggtattgatgtgatgtatctcaaaataataagagctatttatgaaaaacccacagccaatatcatattgaatgggcaaaaactggaagcattccctttgaaaactggcacaagacagggatgccctctctcatcactcctattcaacatagtgttggaagttctggccagggcaatcaggcaagagaaacaaataaag
s panTro5.chr6              29066147 242 + 175400573 gcaaaattcaacagcccttcatgctaaaaactctcaataaactaggtattgatgtgatgtatctcaaaataaaaagagctatttatgaaaaacccacagccaatatcatattgaatgggcaaaaactggaagcattcccttcgaaaactggcacaagacagggatgccctctctcatcactcctattcaacatagtgttggaagttctggccagggcaatcaggcaagagaaacaaataaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29310141 242 + 173848474 gcaaaattcaacagcccttcatgctaaaaactctcaataaactaggtattgatgtgatgtatctcaaaataaaaagagctatttatgaaaaacccacagccaatatcatattgaatgggcaaaaactggaagcattccctttgaaaactggcacaagacagggatgccctctctcatcactcctattcaacatagtgttggaagttctggccagggcaatcaggcaagagaaacaaataaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5110269 242 +   6154872 gcaaaattcaacagtccttcatgctaaaaactctcaataaactaggtattgatgtgatgtatctcaaaataataagagctatttatgaaaaacccacagccaataaaatattgaatgggcaaaaactggaagcattccctttgaaaactggcacaagacagggatgccctctctcatcactcctattcaacatagtgttggaagttccggccagggcaatcaggcaagagaaacaaataaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74116079 242 + 122973662 gcaaaattcagcagcccttcatgctaaaaactctcaataaactaggtattgatgggacatatctcaaaataataagagctatttatgacaaacccacagccaatatcatattgaatgggcaaaaactggaagcattccctttgaaaactggcacaagacaggggtgccctctctcaccactcctattcaacatagtgttggaagttccggccagggcaatcaggcaagagaaagaaataaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29293107 242 + 172585720 gcaaaattcaacagcctttcatgctaaaaactctcaataaactaggtattgatggggcacatctcaaaataataagagttatttattacaaacccacagccaatatcatactgaatgggcaaaaactggaagcattccctttgaaaactggcacaaaacagggatgccctctctcaccactcctattcaacatagtgttggaagttctggtcagggcaatcaggcaggagaaagaaataaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28942941 242 - 170955103 gcaaaattcaacagcctttcatgctaaaaactctcaataaactaggtattgatggggcacatctcaaaataataagagttatttattacaaacccacagccaatatcatactgaatgggcaaaaactggaagcattccctttgaaaactggcacaaaacagggatgccctctctcaccactcctattcaacatagtgttggaagttctggtcagggcaatcaggcaggagaaagaaataaag
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1802338 242 -   2157725 gcaaaattcaacagcccttcacgctaaaaactctcaataaactaggtattgatgggacgtatctcaaaacaataagagctatttatgacaaacccacagccaatatcatattgaatgggcaaaaagttgaagcattccctttgaaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctggtcagggcaatcaggcaggagaaagaaataaag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28260546 242 -  71996105 gcaaaattcaacagccctttgtgctaaaaactctcaataaactaggtattgatgggacgtatctcaaaataataagagctatttatgacaaacccatagccaatatcatattgaatgggcaaaaactggaagcattctctttgaaaactggcacaaggcagggatgccctctctcaccactcctattcaacatagtgttggaagttctggccagggcaatcaggcaggagaaagaaataaag
i chlSab2.chr17            C 0 T 11629
s manLeu1.NW_012104165v1     1928738 199 +   2316924 gcaaaattcaacagcccttcacgctaaaaactctcaataaactaggtattgatgggacgtatctcaaaacaataagagctctttatgacaaacctacagccaatatcatattgaatgggcaaaaacttgaagcattccctttgaaaactggcacaa-------------------------------------------ggaagttctggccagggcaatcaggcaggagaaagaaataaag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1801454 242 -   3067355 gcaaaattcagcagcctttcacgctaaaaactctcaataaactaggtattgatgggatgtatctcaaaataataagagctatttatgacaaacccacagccaatatcatattgaatgggcaaaaactggaagcattccctttgaaaagtgccacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctggccagggcaatcaggcaggagaaagaaataaag
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e saiBol1.JH378348            177304   0 -    375362 C
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      114120   1 -    285216 I
e cebCap1.NW_016108108v1      168402   9 -    373274 I
e calJac3.chr4             171344229   0 - 171630274 C
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=14412.000000
s hg38.chr6_GL000254v2_alt     95820 4 +   4827813 ggta
s panTro5.chr6              29066389 4 + 175400573 ggta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29310383 4 + 173848474 ggta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5110511 4 +   6154872 ggta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74116321 4 + 122973662 ggta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29293349 4 + 172585720 ggta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28943183 4 - 170955103 ggta
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1802580 4 -   2157725 agta
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     1928937 4 +   2316924 agta
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1801696 4 -   3067355 agta
i colAng1.NW_012115566v1   C 0 I 2047
e canFam3.chr35             25854729 1336 +  26524999 I
e saiBol1.JH378348            177304 0 -    375362 C
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      114120 1 -    285216 I
e cebCap1.NW_016108108v1      168402 9 -    373274 I
e calJac3.chr4             171344229 0 - 171630274 C
e chlSab2.chr17             28260788 11629 -  71996105 T
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=474545.000000
s hg38.chr6_GL000254v2_alt     95824 150 +   4827813 ttcagttaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaacctcatcatctcagcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatac-aaaatcaatgtgcaaaaat
s panTro5.chr6              29066393 150 + 175400573 ttcagttaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaacctcatcatctcagcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatac-aaaatcaatgtgcaaaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29310387 150 + 173848474 ttcagttaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaacctcatcatctcagcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatac-aaaatcaatgtgcaaaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5110515 149 +   6154872 ttcagttaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaaccccatcatctcagcccaaaatctccttaagctgataagcaacttcaacaaagtctcaggatac-aaaatcaatgtgc-aaaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74116325 151 + 122973662 ttcagttaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaaccccatcgtctcagtccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaaatcaatgtgcaaaaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29293353 150 + 172585720 ttcatttaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatacttagaaaaccccatcgtctcagtccacaagctccttaagctgataagcaacttcagcaaagtctcaggatac-caaatcaatgtgcaaaaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28943187 150 - 170955103 ttcatttaggaaaagaggaagtcaaattgtccctgtttgcagataacatgattgtatacttagaaaaccccatcgtctcagtccacaagctccttaagctgataagcaacttcagcaaagtctcaggatac-caaatcaatgtgcaaaaat
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1802584 150 -   2157725 ttcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgactgtatatttagaaaaccccatcgtctcagtccacaatctccttaagctgataagcaacttcagcaaagtctcaggatac-aaaatcaatgtgcaaaaat
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     1928941 150 +   2316924 ttcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgactgtatatttagaaaaccccatcgtctcagtccacaatctccttaagctgataagcaacttcagcaaagtctcaggatac-aaaatcaatgtgcaaaaat
i manLeu1.NW_012104165v1   C 0 I 1887
e canFam3.chr35             25854729 1336 +  26524999 I
e saiBol1.JH378348            177304   0 -    375362 C
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      114120   1 -    285216 I
e cebCap1.NW_016108108v1      168402   9 -    373274 I
e calJac3.chr4             171344229   0 - 171630274 C
e colAng1.NW_012115566v1     1801700 2047 -   3067355 I
e chlSab2.chr17             28260788 11629 -  71996105 T
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=1172347.000000
s hg38.chr6_GL000254v2_alt     95974 521 +   4827813 cacaagcattcctatacaccagtaacag----acagagagccaaatcatgagggaactcccattcacaattgctacaaagagaataaaatacctgggaatccaacttacaagggatgtgaaggacctcctcaaggagaattacaaaccactgcttaacaaaataaatgaggacacaaacaaatggaagaacatttcatgctcatggataggaagaatcaatatcatgaaaatggccctactgcccaaggtaatttaaagattcggtgcgatccccatcaagctaccaatgactttcttcacagaattggagaaaaactattttaaagttcatatggaaccaaaaaagagcctgcattgccaagacaatcctaagccaaaagaacaaagctggaggcatcatgctacctgacttcaaactatacta-tatggctacagtaac-tgaaacagcatggtactggcaccaaaacagagatatagaccaatggaacagaatagagcactca-gaaataataccacacgtctac
s panTro5.chr6              29066543 521 + 175400573 cacaagcattcctatacaccagtaacag----acagagagccaaatcatgagggaactcacattcccaattgctacaaagagaataaaatacctgggaatccaacttacaagggatgtgaaggacctcctcaaggagaattacaaaccactgctcaacaaaataaatgaggacacaaacaaatggaagaccattccatgctcatggataggaagaatcaatatcatgaaaatggccatactgcccaaggtaatttatagattcagtgcgatccccatcaagctaccaatgactttcttcacagaattggagaaaaactattttaaagttcatatggaaccaaaaaagagcctgcattgccaagacaatcctaagccaaaagaacaaagctggagacatcatgctacctgacttcaaactatacta-tatggctacagtaac-cgaaacagcatggtactggtaccaaaacagagatatagaccaatggaacagaatagagccctca-gaaataatactacacgtctac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29310537 521 + 173848474 cacaagcattcctatacaccagtaacag----acagagagccaaatcatgagggaactcacattcccaattgctacaaagagaataaaatacctgggaatccaacttacaagggatgtgaaggacctcctcaaggagaattacaaaccactgctcaacaaaataaatgaggacacaaacaaatggaagaacattccatgctcatgtataggaagaatcaatatcatgaaaatggccatactgcccaaggtaatttatagattcagtgcgatccccatcaagctaccaatgactttcttcacagaattggagaaaaactattttaaagttcatatggaaccaaaaaagagcctgcattgccaagacaatcctaagccaaaagaacaaagctggagacatcatgctacctgacttcaaactatacta-tatggctacagtaac-cgaaacagcatggtactggtaccaaaacagagatatagaccaatggaacagaatagagccctca-gaaataataccacacgtctac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5110664 520 +   6154872 cacaagcattcctatacaccagtaacag----acagagagccaaatcatgagggaactcacattcacaattgctacaaagagaataaaatacctgggaatccaacttacaagggatgtgaaggacctcctcaaggagaattacaaaccactgctcaacaaaataaatgaggacacaaacaaatggaagaacattccatgctcatggataggaagaatcaatatcatgaaaatggccatactgcccaaggtaatttatagattcagcgcaatccccatcaag-taccaatgactttcttcacagaattggagaaaaactattttaaagttcatatggaaccaaaaaagagcctgcattgccaagacaatcctaagccaaaagaacaaagctggaggtatcatgctacctgacttcaaactatacta-tgtggctacagtaac-cgaaacagcatggtactgataccaaaacagagatctagaccaatggaatagaatagagccctca-gaaataataccacacgtctac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74116476 519 + 122973662 cacaagcattcttatacaccaataacag----atagagagccaaatcatgagtgaactcccattcacaactgctacgaagagaatcaaatacctaggaatccagcttacaatggatgtgaaggacctcttcaaggagaactacaaaccactgctcaacaaaataaaagaggacacaaacaaatggaagaacattccattctcatggataggaagaatcaatatcgtgaaaatggccacactgtccaaggtaatttatagactcagtgccatccccatcaagctaccaatgactttcttcacagaattggag-aaaactacttggaagttcatatggaa-caaaaaagaacgtgcattgccaagacaatcctaagccaaaagaacaaagctggaggcatcacgctacatgacttcaaactataata-caaggctacagtaac-caaaacagcatggtactggtaccaaaacagagatatagaccaatggaacacaatacagacctca-gaaataataccacacatcgac
i nomLeu3.chr1a            C 0 I 157
s rheMac8.chr4              29293503 523 + 172585720 cacaagtattcctatacatcaaaaacagacaaacagagagccaaatcatgaatgaactcccattcacaattgctacaaagagaacaaaatacctagcaatccaacttacaccgcatgtgaaggacctcttcaaggag--gtagaaaccactgctcaataaaataaaagaggacacaaacaaatggaagaacattccatgctcatagataggaagaatcaatattgtgaaaagggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctaccaatgactttcttcacagaattggagaaaaactactttaaagtttatatggaaccagaaaagagcctgcattgccaagacaatcctaagaaaaaagaacaaagctggaggcatcatgctacctgacttcaaactacacta-caaggctacagtaac-caaaacagcatggtactggtaccaaaatagatatatagaccaatggaacagaacagagccctca-gaaataataccacacatctac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28943337 523 - 170955103 cacaagtattcctatacatcaaaaatagacaaacagagagccaaatcatgaatgaactcccattcacaattgctacaaagagaacaaaatacctagcaatccaacttacacggcatgtgaaagacctcttcaaggag--gtagaaaccactgctcaataaaataaaagaggacacaaacaaatggaagaacattccatgctcatagataggaagaatcaatattgtgaaaagggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctaccaatgactttcttcacagaattggagaaaaactactttaaagttcatatggaaccagaaaagagcctgcattgccaagacaatcctaagaaaaaagaacaaagctggaggcatcatgctacctgacttcaaactacacta-caaggctacagtaac-caaaacagcatggtactggtaccaaaatagatatatagaccaatggaacagaacagagccctca-gaaataataccacacatctac
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1802734 522 -   2157725 cacaagcattcctatacatcaaaaacagacaaacagagagccaaatcatgaatgaactctcattcacaattgctaaaaagagaacaaaatacctaggaatccaacttacatggcatgtgaaggacctcttcaaggagaagtacaaaccactgctcaacaaaataaaagaggacacaaacaaatggaagaacattccatgctcatggataggaagaatcactatcgtgaaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctaccaataactttcttcacagaattggaaaaaaactacttaaaagttcatatggaacc--aaaaaggcctgcattgccaag-caatcctaag-aaaaagaagaaagctgga-gcatcatgctacctgacttcaaactacactatcaaggctacagtaacgcaaaacagcatggtactggta-caaaatagatatatagaccaaggacccagaacagagccctcagggaataataccacacatctac
i cerAty1.NW_012001495v1   C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e saiBol1.JH378348            177304   0 -    375362 C
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      114120   1 -    285216 I
e cebCap1.NW_016108108v1      168402   9 -    373274 I
e calJac3.chr4             171344229   0 - 171630274 C
e colAng1.NW_012115566v1     1801700 2047 -   3067355 I
e manLeu1.NW_012104165v1     1929091 1887 +   2316924 I
e chlSab2.chr17             28260788 11629 -  71996105 T
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=302440.000000
s hg38.chr6_GL000254v2_alt     96495 175 +   4827813 aaccatttgatctttgacaaacctgacaaaaacaagaaatggggaaaggattccctatttaataaatggtgctgagaaaactggctagccatatgtagaaagctgaaactggatccc-ttccttacaccttatacaaaa-attaattcaagatggatgaaagacttaaatgttagac
s panTro5.chr6              29067064 175 + 175400573 aaccatttgatctttgacaaacctgacaaaaacaagaaatggggaaaggattccctatttaataaatggtgctgagaaaactggctagccatatgtagaaagctgaaactggatccc-ttcattacaccttatacaaaa-attaattcaagatggattaaagacttaaatgttagac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29311058 175 + 173848474 aaccatttgatctttgacaaacctgacaaaaacaagaaatggggaaaggattccctatttaataaatggtgctgagaaaactggctagccatatgtagaaagctgaaactggatccc-ttcattacaccttatacaaaa-attaattcaagatggattaaagacttaaatgttagac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5111184 175 +   6154872 aaccatttgatctttgacaaacctgacaaaaacaagcaatggggaaaggattccctatttaataaatggtgctgagaaaactggctagccgtatgtagaaagctgaaactggatccc-ttccttacaccttatacaaaa-atcaattcaagatggattaaagacttcaatgttagac
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29294026 175 + 172585720 aaacatctgatctttgacaaacctgacaaaaacaagaaatggggagaagattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaagttgaaactggatcca-ttctttacactttatacaaaa-attaattcaagatggattaaagacttaaatattagac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28943860 175 - 170955103 aaacatctgatctttgacaaacctgacaaaaacaagaaatggggagaagattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaagttgaaactggatcca-ttctttacactttatacaaaa-attaattcaagatggattaaagacttaaatattagac
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1803256 171 -   2157725 aaccatctgatctttgac-aacctgacaaaaacaagaaatggggagaagatt-cctatttaataaatggtgctgggaaaactggctagccata---agtaagctgaaactggatccacttccttacac-ttatacaaaagattaattcaagatggattaaagacttaaatattagac
i cerAty1.NW_012001495v1   C 0 I 1263
e canFam3.chr35             25854729 1336 +  26524999 I
e saiBol1.JH378348            177304   0 -    375362 C
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      114120   1 -    285216 I
e cebCap1.NW_016108108v1      168402   9 -    373274 I
e calJac3.chr4             171344229   0 - 171630274 C
e colAng1.NW_012115566v1     1801700 2047 -   3067355 I
e manLeu1.NW_012104165v1     1929091 1887 +   2316924 I
e chlSab2.chr17             28260788 11629 -  71996105 T
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I
e nomLeu3.chr1a             74116995 157 + 122973662 I

a score=604746.000000
s hg38.chr6_GL000254v2_alt     96670 470 +   4827813 ctaaaaccataaaaaccctagaacaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaatagacaaatgggatctaattaaaccaaagagcttctgcacagcaaaagaaaccaccatcagagcgaacaggcaacctacagaatgggagaaaatttttgcaacctacccatctgacaaagggctaatatctagaatctacaaagaacttaaacaaatttacaag-aaaaaatcaaacaaccccatcaaaccccaacaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaatggacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagattccatctcacaccagttaggatggcaatcattaaaaa
s panTro5.chr6              29067239 464 + 175400573 ctaaaaccataaaaaccctagaacaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaagcaatgacaacaaaagccaaaatagacaaatgggatctaattaaaccaaagagcttctgcacagcaaaagaaaccaccaccagagcgaacaggcaacctacggaatgggagaaaatttttgcaacctacccatctgacaaagggctaatatctagaatctacaaagaacttaaacaaatttacaag-aaaaaatcaaacaaccccatcaaaccccatcaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaacggacacatgaaaaaacg------gacactggccatcagagaaatgcaaatcaaaaccacaatgagattccatctcacaccagttaggatggcaatcattaaaaa
i panTro5.chr6             C 0 I 10566
s panPan2.chr6              29311233 470 + 173848474 ctaaaaccataaaaaccctagaacaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaagcaagggcaacaaaagccaaaatagacaaatgggatctaattaaaccaaagagcttctgcacagcaaaagaaaccaccatcagagcgaacaggcaacctacagaatgggagaaaatttttgcaacctacccatctgacgaagggctaatatctagaatctacaaagaacttaaacaaatttacaag-aaaaaatcaaacaaccccatcaaaccccatcaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaacggacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagattccatctcacaccagttaggatggcaatcattaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5111359 471 +   6154872 ctaaaaccagaaaaaccctagaacaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaatagacaaatgggatctaattaaaccaaagagcttctgcacagcaaaagaaaccaccatcagagcgaacaggcaaactacagaatgggagaaaatttttgcaacctacctatctgacaaagggctaatatctagaatctacaaagaacttaaacaaatttacaagaaaaaaatcaaacaaccccatcaaaccccatcaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaacagacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttaggatggcaatcattaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29294201 461 + 172585720 ctaaaaccatgaaaaccctagaagaaaacctaggcaataccattcagggcataggcatgggcaaggacttcacgtataaaacaccaaaagcaatggcaacaaaaggcaaaatagacaaatgggatccaattaaactaaagagctcctgcacagcaaaagaaaccaccatcagagtgaacaggcaacctacagaatgggagaaaacttttgcaatatacccatctgacaaagggctaatatctagaatctacaaagaacttaaacaaatttacaagaaaaaaatcaaacaaccccat----------gaaaaagtgggcaaaggatatgaacaaactcttctcaaaagaagacatatatgcagccaacagacacatgaaaaaatggtcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28944035 461 - 170955103 ctaaaaccatgaaaaccctagaagaaaacctaggcaataccattcagggcataggcatgggcaaggacttcacgtataaaacaccaaaagcaatggcaacaaaaggcaaaatagacaaatgggatccaattaaactaaagagctcctgcacagcaaaagaaaccaccatcagagtgaacaggcaacctacagaatgggagaaaacttttgcaatatacccatctgacaaagggctaatatctagaatctacaaagaacttaaacaaatttacaagaaaaaaatcaaacaaccccat----------gaaaaagtgggcaaaggatatgaacaaactcttctcaaaagaagacatatatgcagccaacagacacatgaaaaaatggtcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaaaa
i macFas5.chr4             C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e saiBol1.JH378348            177304   0 -    375362 C
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      114120   1 -    285216 I
e cebCap1.NW_016108108v1      168402   9 -    373274 I
e calJac3.chr4             171344229   0 - 171630274 C
e colAng1.NW_012115566v1     1801700 2047 -   3067355 I
e manLeu1.NW_012104165v1     1929091 1887 +   2316924 I
e chlSab2.chr17             28260788 11629 -  71996105 T
e cerAty1.NW_012001495v1     1803427 1263 -   2157725 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I
e nomLeu3.chr1a             74116995 157 + 122973662 I

a score=241921.000000
s hg38.chr6_GL000254v2_alt     97140 207 +   4827813 gtcaggaaacaacagg-tgc-tggagaggatgtgg-agaaatagg-aacacttttacactgttggtgggactg-taaactagttc-aaccattgtggaagacagtgtggcgattcctcaagg-atctagaactagaaataccatttga-cccagccatcccattactgggtatatacccaaaggattat-aaatcatgctgctat-aaagacacatg
s panTro5.chr6             146331824 216 - 175400573 gtcaggaaacaacaggttgcttggaagaggtgtggaagaaataggaaacacttttacactgttggtgcgactgctaaactagttcaaaccatttgtgaagacag-gtggcgattcctcaaggcatctagaactagaaataccatttgagcccagccatcccattactgggtatatacacaaaggattataaaatcatgctgctataaaagacacatg
i panTro5.chr6             n 10566 I 19
s panPan2.chr6              29311703 207 + 173848474 gtcaggaaacaacagg-tgc-tggagaggatgtgg-agaaatagg-aacacttttacactgttggtgggactg-taaactagttc-aaccattgtggaagacagtgtggtgattcctcaagg-atctagaactagaaataccatttga-cccagccatcccattactgggtatatacccaaaggattat-aaatcatgctgctat-aaagacacatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5111830 207 +   6154872 gtcaggaaacaacagg-tgc-tggagaggatgtgg-agaaatagg-aacacttttacactgttggtgggactg-taaactagttc-aaccattgtggaagacagtgtggtgattcctcaagg-atctagaactagaaataccatttga-cccagtgatcccattgctgggtatatacccaaaggattat-aaatcatgctgctat-aaagacacatg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29294662 206 + 172585720 gtcaggaaacaacag--tgc-tggagaggatgtgg-agaaatagg-aacacttttacactgttggtgggactc-taaactagttc-aacctttgtggaagacagtgtgatgattcctcaatg-atctagaactagaaataccatttga-cccagccatcccgttactgggtgtatacccaaaggattat-aaatcatactactat-aaagacacaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28944496 206 - 170955103 gtcaggaaacaacag--tgc-tggagaggatgtgg-agaaatagg-aacacttttacactgttggtgggactc-taaactagttc-aacctttgtggaagacagtgtgatgattcctgaatg-atctagaactagaaataccatttga-cccagccatcccgttactgggtgtatacccaaaggattat-aaatcatactactat-aaagacacaca
i macFas5.chr4             C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e saiBol1.JH378348            177304   0 -    375362 C
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      114120   1 -    285216 I
e cebCap1.NW_016108108v1      168402   9 -    373274 I
e calJac3.chr4             171344229   0 - 171630274 C
e colAng1.NW_012115566v1     1801700 2047 -   3067355 I
e manLeu1.NW_012104165v1     1929091 1887 +   2316924 I
e chlSab2.chr17             28260788 11629 -  71996105 T
e cerAty1.NW_012001495v1     1803427 1263 -   2157725 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I
e nomLeu3.chr1a             74116995 157 + 122973662 I

a score=15173.000000
s hg38.chr6_GL000254v2_alt     97347 20 +   4827813 cacacgtatgtttattgtgg
s panPan2.chr6              29311910 20 + 173848474 cacatgtatgtttattgtgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5112037 20 +   6154872 cacatgtatgtttattgtgg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29294868 18 + 172585720 cac--gtatgtttatcgtgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28944702 20 - 170955103 cacatgtatgtttatcgtgg
i macFas5.chr4             C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e saiBol1.JH378348            177304  0 -    375362 C
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      114120  1 -    285216 I
e cebCap1.NW_016108108v1      168402  9 -    373274 I
e calJac3.chr4             171344229  0 - 171630274 C
e colAng1.NW_012115566v1     1801700 2047 -   3067355 I
e manLeu1.NW_012104165v1     1929091 1887 +   2316924 I
e chlSab2.chr17             28260788 11629 -  71996105 T
e cerAty1.NW_012001495v1     1803427 1263 -   2157725 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I
e nomLeu3.chr1a             74116995 157 + 122973662 I
e panTro5.chr6             146332040 19 - 175400573 I

a score=40354.000000
s hg38.chr6_GL000254v2_alt     97367 61 +   4827813 cact-attc-acaatagcaaa-gacttgg-aaccaacccaaa--tgtgccttctatatgtaagg-cac
s panTro5.chr6             146332059 68 - 175400573 cactcattcaacaatagcaaaggacttggcaaccaacccagaattgtgccttctatatgtaaggtcac
i panTro5.chr6             I 19 C 0
s panPan2.chr6              29311930 61 + 173848474 cact-attc-acaatagcaaa-gacttgg-aaccaacccaaa--tgtgccttctatatgtaagg-cac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5112057 61 +   6154872 cact-attc-acaatagcaaa-gacttgg-aaccaacccaaa--tgtgccttctatatgtaagg-cac
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29294886 37 + 172585720 cact-attc-acaatagcaaa-gacttgg-aaccaacccaa---------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28944722 37 - 170955103 cact-attc-acaatagcaaa-gacttgg-aaccaacccaa---------------------------
i macFas5.chr4             C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e saiBol1.JH378348            177304  0 -    375362 C
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      114120  1 -    285216 I
e cebCap1.NW_016108108v1      168402  9 -    373274 I
e calJac3.chr4             171344229  0 - 171630274 C
e colAng1.NW_012115566v1     1801700 2047 -   3067355 I
e manLeu1.NW_012104165v1     1929091 1887 +   2316924 I
e chlSab2.chr17             28260788 11629 -  71996105 T
e cerAty1.NW_012001495v1     1803427 1263 -   2157725 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I
e nomLeu3.chr1a             74116995 157 + 122973662 I

a score=625818.000000
s hg38.chr6_GL000254v2_alt     97428 396 +   4827813 atgtccatcaatgatagactgaatttaacaaacgtggcacatatacaccatggaa-tactatgcagccataaaaaaggatgagtt--catg-tcctttgta--gggacatgg-atgaagctgggaa-ccatcattctgaacaaactatcacaaggacagaaaaccaaac-act-gcac-gttc-tcactcataggtg-ggaattgaacaatgagaacat-ttggacacagggtggggaacatcacacaccggggcctg-tcgcggggtggggtg-ataggggagggatagca-ttaggagaaatacctaatgtaaatgagg-agttaatgggtgcagcacaccaacatgg--cacatgtatacatatgtaacaaacctgcacgtt-gtgcacaggtaccctagaacttaaagtataa
s panTro5.chr6             146332127 406 - 175400573 atgtccttcaatga-agactgaatttagcaaacgtggcacatataca-catggaactactatgcag-cat-aaaaaggatgagtttacatgttcctttgtatggcgacatagtatgaagctgggaa--catcatt-tg-acaaactatcacaaggacagaaaaccaaacaactggcacagttcttcactcataggtgcgcgattg-acaatgagaacacattgaacacagggtggggaacatcacacccggggacctgctcgcggggtggggat-agagggaagggatagcatttaggagaaatacctaatgtaaatgaggcagttaatgggtgcagcacaccaacatggtccacatgtatacatatgtaacaaacctgcacgttcgtgcacaggtacccta-aacttaaagtataa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29311991 396 + 173848474 atgtccatcaatgatagactgaatttagcaaacgtggcacatatacaccatggaa-tactatgcagccataaaaaaggatgagtt--catg-tcctttgta--gggacatag-atgaagctgggaa-ccatcattctgaacaaactatcacaaggacagaaaaccaaac-act-gcac-gttc-tcactcataggtg-ggaattgaacaatgagaacac-ttgaacacagggtggggaacatcacacaccggggcctg-tcgcggggtggggtg-ataggggagggatagca-ttaggagaaatacctaatgtaaatgagg-agttaatgggtgcagcacaccaacatgg--cacatgtatacatatgtaacaaacctgcacgtt-gtgcacaggtaccctagaacttaaagtataa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5112118 396 +   6154872 atgtccatcaatgatagactgaatttagaaaacgtgacacatatacaccatggaa-tactatgcagccataaaaaaggatgagtt--catg-tcctttgta--gggacatgg-atgaagctgggaa-ccatcattctgaacaaactatcacaaggacagaaaaccaaac-act-gcac-gttc-tcactcataggtg-ggaattgaacaatgagaacac-ttggacacagggtggggaacatcacacaccggggcctg-tcgtggggtggggtg-ataggggagggatagca-ttaggagaaatacctaatgtaaatgagg-agttaatgggtgcagcacaccaacatgg--cacatgtatacatatgtaacagacctgcacgtt-gtgcacaggtaccctagaacttaaagtataa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74117152 397 + 122973662 atgtccatcaatgatagactgaattaagaaaacgtggcacatatgcaccatggaa-tactatgcagccgtaaaagaggatgagtt--catg-tcctttgta--gggaaatgg-atgaagctggaaa-ccatcattctgaacaaactatcgcaaggacagaaaaccaaac-act-acat-gttc-tcactcataggtg-ggaattgaacaatgagaacac-ttggacacagggtggggaacatcacacaccggggcctg-tcgcggggtggggggtataggggagggatagca-ttaggggaaatacctaatgtaaatgagg-agttaatgggtgcagcacaccaacatgg--cacatgtatacatatgtaacaaacctgcatgtt-gtgcacatgtaccctagaacttaaagtataa
i nomLeu3.chr1a            I 157 C 0
s rheMac8.chr4              29294923 398 + 172585720 aagtccatcaatgatagactgaattaagaaaatgtagcacatatacgccatggaa-tactatgcagccataaaaaaggataagtt--catg-tcctttgta--gggacaagg-atgaaggtggaaacccatcattctgaacgaactataacaaggacagaaaaccaaac-acc-acat-gttc-tcactcataggtgggaaattgaacaatcagaacat-ttggacataggatggggagcgttacacatcggggcctg-ttgcagcgtgggagg-agggggataggatagta-ttaggagaaatacctaatgtaaatgagg-agttaatgggtgcagcacaccaacatgg--cacatgtatacatatgtaacaaacctgcacatt-atacacatgtaccctagaacttaaagtataa
i rheMac8.chr4             C 0 I 24
s macFas5.chr4              28944759 398 - 170955103 aagtccatcaatgatagactgaattaagaaaatgtagcacatatacgccatggaa-tactatgcagccataaaaaaggataagtt--catg-tcctttgta--gggacaagg-atgaaggtggaaacccatcattctgaacgaactataacaaggacagaaaaccaaac-acc-acat-gttc-tcactcataggtgggaaattgaacaatcagaacat-ttggacataggatggggagcgttacacatcggggcctg-ttgcagcgtgggagg-agggggataggatagta-ttaggagaaatacctaatgtaaatgagg-agttaatgggtgcagcacaccaacatgg--cacatgtatacatatgtaacaaacctgcacatt-atacacatgtaccctagaacttaaagtataa
i macFas5.chr4             C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e saiBol1.JH378348            177304   0 -    375362 C
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      114120   1 -    285216 I
e cebCap1.NW_016108108v1      168402   9 -    373274 I
e calJac3.chr4             171344229   0 - 171630274 C
e colAng1.NW_012115566v1     1801700 2047 -   3067355 I
e manLeu1.NW_012104165v1     1929091 1887 +   2316924 I
e chlSab2.chr17             28260788 11629 -  71996105 T
e cerAty1.NW_012001495v1     1803427 1263 -   2157725 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I

a score=19973.000000
s hg38.chr6_GL000254v2_alt     97824 31 +   4827813 tgattaaaaa---aaaaaaTCTTAAAAAAA--AAAG
s panTro5.chr6             146332533 28 - 175400573 tgatt---aa---aaaaaaTCTTATAAAAA--AAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29312387 30 + 173848474 tgatt--aaa---aaaaaaTCTTAAAAAAA-TAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5112514 30 +   6154872 taatt-aaaa---aaaaaaTCTTAAAAAAA--AAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74117549 32 + 122973662 taatt-aaaa---aaaaaaTCTTAAAAAAAAAAAAG
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28945157 31 - 170955103 --aat-aaaatttaaaaaTACTCAAGAAAA--AAAA
i macFas5.chr4             C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e saiBol1.JH378348            177304  0 -    375362 C
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      114120  1 -    285216 I
e cebCap1.NW_016108108v1      168402  9 -    373274 I
e calJac3.chr4             171344229  0 - 171630274 C
e colAng1.NW_012115566v1     1801700 2047 -   3067355 I
e manLeu1.NW_012104165v1     1929091 1887 +   2316924 I
e chlSab2.chr17             28260788 11629 -  71996105 T
e cerAty1.NW_012001495v1     1803427 1263 -   2157725 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I
e rheMac8.chr4              29295321 24 + 172585720 I

a score=334728.000000
s hg38.chr6_GL000254v2_alt     97855 294 +   4827813 Aggccgggcgcggtggctcaagcctgtaatcccagcactttgggaggtcaagacaggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaac-ccggtctctactaaaaatacaaaaaaaaaaaaaaaa---------------attagccaggcatagtggcaggcgcctgtagtcccagctactcaggaggctgaggctg-gagaatggtgtgaacccaggaggcggagcttgcag-tgagccgagatcacgccactgcactccagcctgggcgac-tgagtgagactccatctct
s panTro5.chr6             146332561 309 - 175400573 Aggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggtc-agacaggcggatcacgaggtcaggagatcgaggccatcctggctaatac-gtgaaacaccggtctctactaaaaatacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacattagcca-gcatagtggcaggcgcctgtagtcccagctactcaggaggctgaggccgcgagaatggtgcgaacccaggaggcggagcttgcagttgagccgagatcacgccactgcactccagcctgggcgac-tgagtggagctccatctcT
i panTro5.chr6             C 0 n 0
s panPan2.chr6              29312417 293 + 173848474 Aggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggtcaagacaggcggatcacgaggtcaggagatcgaggccatcctggctaatacggtgaaac-ccggtctctactaaaaatacaaaaaaaaaaaaaaa----------------ttaagccaggcatagtggcaggcgcctgtagtcccagctactcaggaggctgaggccg-gagaatggtgtgaacccaggaggcggagcttgcag-tgagccgagatcacgccactgcactccagcctgggcgac-tgagtgagactccatctct
i panPan2.chr6             C 0 I 6
s gorGor5.CYUI01015250v1     5112544 296 +   6154872 Aggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggtcaagacaggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaac-ccggtctctactaaaaatacaaaaaaaaaaaaaaaaaaaaaa---------attagccaggcgtagtggcgggtgcctgtagtcccagct----aggaggctgaggccg-gagaatggtgtgaacccaggaggcggagcttgcag-tgagccgagatcacgccactgcactccagcctgggcgac-tgagtgagactccatctcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74117581 296 + 122973662 Aggccgggcacagtggctcacgcctgtaatcccagcactttggggtgcggaggcgggcggatcacgaggtcaggagatcgagaccatccaggctaacacggtgaaac-cccgtctctactaaaaataccaaaaaaaaaaaaaaaaaaa-----------attagccgggcgtagtggcgggcgcctgtagtcccagctactcgggaggctgaggcag-gagaatggcgtgaacccaggaggcggagcttgcag-tgagc--agatcgcgccactgcactccagcctgggtgac-tgagtgagactccgtctct
i nomLeu3.chr1a            C 0 I 6
s cebCap1.NW_016108108v1      168411 284 -    373274 Aggccggacgcggtggctcaagcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaagagatcgagaccatcctggtcaacatggtgaaac-cccgtctctactaaaaatacaaaaa--------------------------attagctgggcatggtggcgcgtgcttgtaatcccagctactcaggaggctgaggcag-aagaattgcctgaacccaggaggcggaggctgcgg-tgagccgagattgcgccattgcactccagcctgggtaacaagagcgaaactctgtctca
i cebCap1.NW_016108108v1   I 9 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e saiBol1.JH378348            177304   0 -    375362 C
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      114120   1 -    285216 I
e calJac3.chr4             171344229   0 - 171630274 C
e colAng1.NW_012115566v1     1801700 2047 -   3067355 I
e manLeu1.NW_012104165v1     1929091 1887 +   2316924 I
e chlSab2.chr17             28260788 11629 -  71996105 T
e cerAty1.NW_012001495v1     1803427 1263 -   2157725 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I
e macFas5.chr4              28945188   0 - 170955103 C
e rheMac8.chr4              29295321  24 + 172585720 I

a score=10605.000000
s hg38.chr6_GL000254v2_alt     98149 12 +   4827813 aaaaaaaaaaaa--------------
s panTro5.chr6              29078269 12 + 175400573 aaaaaaaaaaaa--------------
i panTro5.chr6             I 10566 C 0
s panPan2.chr6              29312716 12 + 173848474 aaaaaaaaaaaa--------------
i panPan2.chr6             I 6 C 0
s gorGor5.CYUI01015250v1     5112840 12 +   6154872 aaaaaaaaaaaa--------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74117883 12 + 122973662 aaaaaaaaaaaa--------------
i nomLeu3.chr1a            I 6 C 0
s cebCap1.NW_016108108v1      168695 25 -    373274 -aaaaaaaataataaataaataaata
i cebCap1.NW_016108108v1   C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e saiBol1.JH378348            177304  0 -    375362 C
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      114120  1 -    285216 I
e calJac3.chr4             171344229  0 - 171630274 C
e colAng1.NW_012115566v1     1801700 2047 -   3067355 I
e manLeu1.NW_012104165v1     1929091 1887 +   2316924 I
e chlSab2.chr17             28260788 11629 -  71996105 T
e cerAty1.NW_012001495v1     1803427 1263 -   2157725 I
e macNem1.NW_012011356v1     1919203 8052 -   2996164 I
e macFas5.chr4              28945188  0 - 170955103 C
e rheMac8.chr4              29295321 24 + 172585720 I

a score=3520.000000
s hg38.chr6_GL000254v2_alt     98161  8 +   4827813 aaaaaaa-----------------c
s panTro5.chr6              29078281  8 + 175400573 aaaaaaa-----------------c
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29312728  8 + 173848474 aaaaaCA-----------------C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5112852 25 +   6154872 aaaaaaacaacaaaaaaAAACCCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74117895  8 + 122973662 aaaaaaT-----------------C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29295345  7 + 172585720 AAAAAAA------------------
i rheMac8.chr4             I 24 C 0
s macNem1.NW_012011356v1     1927255  7 -   2996164 AAAAAAA------------------
i macNem1.NW_012011356v1   I 8052 C 0
s cebCap1.NW_016108108v1      168720  8 -    373274 aaataaa-----------------t
i cebCap1.NW_016108108v1   C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e saiBol1.JH378348            177304  0 -    375362 C
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      114120  1 -    285216 I
e calJac3.chr4             171344229  0 - 171630274 C
e colAng1.NW_012115566v1     1801700 2047 -   3067355 I
e manLeu1.NW_012104165v1     1929091 1887 +   2316924 I
e chlSab2.chr17             28260788 11629 -  71996105 T
e cerAty1.NW_012001495v1     1803427 1263 -   2157725 I
e macFas5.chr4              28945188  0 - 170955103 C

a score=5828.000000
s hg38.chr6_GL000254v2_alt     98169 2 +   4827813 ag
s panTro5.chr6              29078289 2 + 175400573 ag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29312736 2 + 173848474 AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5112877 2 +   6154872 AG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74117903 2 + 122973662 AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29295352 2 + 172585720 AG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28945188 2 - 170955103 AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1927262 2 -   2996164 AG
i macNem1.NW_012011356v1   C 0 C 0
s cebCap1.NW_016108108v1      168728 2 -    373274 aa
i cebCap1.NW_016108108v1   C 0 I 5
e canFam3.chr35             25854729 1336 +  26524999 I
e saiBol1.JH378348            177304 0 -    375362 C
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      114120 1 -    285216 I
e calJac3.chr4             171344229 0 - 171630274 C
e colAng1.NW_012115566v1     1801700 2047 -   3067355 I
e manLeu1.NW_012104165v1     1929091 1887 +   2316924 I
e chlSab2.chr17             28260788 11629 -  71996105 T
e cerAty1.NW_012001495v1     1803427 1263 -   2157725 I

a score=42990.000000
s hg38.chr6_GL000254v2_alt     98171 9 +   4827813 aaaTTAACG
s panTro5.chr6              29078291 9 + 175400573 aaaTTAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29312738 9 + 173848474 AAATTAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5112879 9 +   6154872 AAATTAACG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74117905 9 + 122973662 AAATTAACG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29295354 9 + 172585720 AAATTAACG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28945190 9 - 170955103 AAATTAACG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1927264 9 -   2996164 AAATTAACG
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1930978 9 +   2316924 AAATTAACG
i manLeu1.NW_012104165v1   I 1887 C 0
s colAng1.NW_012115566v1     1803747 9 -   3067355 AAATTAACG
i colAng1.NW_012115566v1   I 2047 C 0
s saiBol1.JH378348            177304 9 -    375362 AAATGACCG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      168735 9 -    373274 aaATGACCA
i cebCap1.NW_016108108v1   I 5 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      114120 1 -    285216 I
e calJac3.chr4             171344229 0 - 171630274 C
e chlSab2.chr17             28260788 11629 -  71996105 T
e cerAty1.NW_012001495v1     1803427 1263 -   2157725 I

a score=-1580.000000
s hg38.chr6_GL000254v2_alt     98180  7 +   4827813 TCT-----TGG--G
s panTro5.chr6              29078300  7 + 175400573 TCT-----TGG--G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29312747  7 + 173848474 TCT-----TGG--G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5112888 12 +   6154872 TCTTGGGGTGG--G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74117914  6 + 122973662 TCT-----T-G--G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29295363  6 + 172585720 TCT-----TGA---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28945199  6 - 170955103 TCT-----TGA---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1927273  6 -   2996164 TCT-----TGA---
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1930987  7 +   2316924 TCT-----TGAG--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1803756  7 -   3067355 TCT-----TGA-G-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171344229  6 - 171630274 TCT-----TGG---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            177313  6 -    375362 CCT-----TGG---
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      168744  6 -    373274 TCT-----TGG---
i cebCap1.NW_016108108v1   C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      114120  1 -    285216 I
e chlSab2.chr17             28260788 11629 -  71996105 T
e cerAty1.NW_012001495v1     1803427 1263 -   2157725 I

a score=3377500.000000
s hg38.chr6_GL000254v2_alt     98187 363 +   4827813 GTCACGTGTTTACTTCTCATGTGACAGGCAACGAAAAGAGAGTAGGACACCTGAATGTGCTTTGTACTAAGGAGTGGTATTAAGAACTCGGAAACTGACCGTTGAAGGTTCTCGGGAGCTGAACCTGAGGCCTCCTATATGTAAGGCACACGTTCTATCACTGAACTACATCTCCTCATGCCAAGAGATATTTGTGTCGTCCTCCAAGTACTATTGCAGTatatgaaaacaataaaaatatggaaat-a-aaaaataacttaaaaattaaaaAGGTggccgggcacggtagctcacgcttgta-atcgcagcagtttggaagt-tggaggcggtcagatcatttaaggtcagaagttcgaggccagc
s panTro5.chr6              29078307 363 + 175400573 GTCACGTGTTTACTTCTCATGTGACAGGCAACGAAAAGAGAGTAGGACACCTGAATGTGCTTTGTACTAAGGAGTGGTATTAAGAACTCGGAAACTGACCGTtggaggtgctcgggagctgaacctgaggcctcctatatgtaaggcacacgttctatcactgaactacatctccTCATGCCAAGAGATATTTGTGTCGTCCTCCAAGTACTATTGCAGTatatgaaaacaataaaaatatggaaat-a-aaaaataacttaaaaattaaaaAGGTggccgggcacggtagctcacgcttgta-atcgcagcagtttggaagt-tggaggcggtcagatcatttaaggtcagaagttcgaggccagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29312754 363 + 173848474 GTCACGTGTTTACTTCTCATGTGACAGGCAACGAAAAGAGAGTAGGACACCTGAATGTGCTTTGTACTAAGGAGTGGTATTAAGAACTCGGAAACTGACCGTtggaggtgctcgggagctgaacctgaggcctcctatatgtaaggcacacgttttatcactgaactacatctccTCATGCCAAGAGATATTTGTGTCGTCCTCCAAGTACTATTGCAGTatatgaaaacaataaaaatatggaaat-a-aaaaataacttaaaaattaaaaAGGTggccgggcacggtagctcacgcttgta-atcgcagcagtttggaagt-tggaggcggtcagatcacttaaggtcagaagttcgaggccagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5112900 363 +   6154872 GTCACGTGTTTACTTCTCATGTGACAGGCAACGAAAAGAGAGTAGGACACCTGAATGTGCTTTGTACTAAGGAGTGGTATTAAGAACTCGGAAACTGACCGTtggaggtgctcgggagctgaacctgaggcctcctatatgtaaggcacacgttctatcactgaactacatctccTCATGCCAAGAGATATTTGTGTCGTCCTCCAAGTACTATTGCAGTatatgaaaacaataaaaatatggaaat-a-aaaaataacttaaaaattaaaaAGGTggccgggcacggtagctcacgcttgta-atcgcagcagtttggaagt-tggaggcggtcagatcatttaaggtcagaagctcgaggccagc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74117920 354 + 122973662 GTCACTTGTTTACTTCTTATGTGACAGGCAACAGAAAGAGAGTAAGACACCTGAGTGTGCTTTGTACTGAGGAGTGGTATTAAGAACTCGGAAACTGACCGTtggaggtgctcaggagctgaacttgaggcctcctatatgtaaggcacacgttctatcactga---acatctccT-----CAAGAGATATTTGTGTCGTCCTCCAACTACTATTGCAGTATATGAaaacaataaaaatatggaaat-a-aaaaataatttaaaaattaaaaaGGTggccgggcacggtagctcatgcttgta-atcgcag-agtttggaagg-tggaggctggcagatcatttaaggtcagaagttcgatgccacc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29295369 363 + 172585720 GTCACGTGTTTACTTCTCATGTGACAGGCAACAAAAAGAGAGTAAGACACCTGAGTGTGCATTGTACTGAGGAGTGGTATTAAGAACTTGGAAACTGACCATtggaggtgctcaggaactgaacctgaagcctcctatatgtaaggcacacgtactattgctgaactacatctccTCATGCCAAGAGATATGTGTGTGGTCCTCCAAGTACTATTGCAGTATATGAAAACAATAAAAATATGGAAAT-A-AAAAATAATTTTAAAATTTAAAAGGTAgccaggcacagtagctcatgcttgta-atcgcagcagtttggaagg-cggaggggggcagatcatttaagaacagaagttcgaggccagc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28945205 363 - 170955103 GTCACGTGTTTACTTCTCATGTGACAGGCAACAAAAAGAGAGTAAGACACCTGAGTGTGCATTGTACTGAGGAGTGGTATTAAGAACTTGGAAACTGACCGTTGGAGGTGCTCAGGAACTGAACCTGAAGCCTCCTATATGTAAGGCACACGTACTATTGCTGAACTACATCTCCTCATGCCAAGAGATATTTGTGTGGTCCTCCAAGTACTATTGCAGTATATGAAAACAATAAAAATATGGAAAT-A-AAAAATAATTTTAAAATTTAAAAGGTAgccaggcacagtagctcatgcttgta-atcgcagcagtttggaagg-cggaggggggcagatcatttaagaacagaagttcgaggccagc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1927279 363 -   2996164 GTCACGTGTTTACTTCTCATGTGACAGGCAACGAAAAGAGAGTAAGACACCTGAGTGTGCATTGTACTGAGGAGTGGTATTAAGAACTTGGAAACTGACCGTtggaggtgctcgggagctgaacttgaggcctcctatatgtaaggcacacgtactattgctgaactacatctccTCATGCCAAGAGATATTTGTGTGGTCCTCCAAGTACTATTGCAGTATATGAaaacaataaaaatatggaaat-a-aaaaataattttaaaatttaaaaggtagccaggcacagtagctcatgcttgta-atcgcagcagtttggaagg-cggaggggggcagatcatttaagaacggaagttcgaggccagc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1804690 361 -   2157725 GTCACGTGTTTACTTCTCATGTGGCAGGCAACGAAATGAGAGTAAGACACCTGAGTGTGCATTGTACTGAGGAGTGGTATTAAGAACTTGGAAACTGACtgttggaggtgctcgagagctgaacctgaggcctcctatatgtaagccacacatactatcgctgaactacatctccTCATGCCAAGAGATATTTGTGTGGTCCTCCAAGTACTATTGCAGTATATGAAAACAATAAAAATATGG-AAT-A-AAAAATAATTTAAAATTTACAAAGGTggctgggccacggtcctcatgcttgtacatcgcg--cgtttggaaggacggaggcgggcaggtca-ttaagacacgaagttgaggcgcagc
i cerAty1.NW_012001495v1   I 1263 C 0
s chlSab2.chr17             28249159 364 -  71996105 GTCACGTGTTTACTTCTCATGTGGCAGGCAACGAAAAGAGAGTAAGACACCTGAGTGTGCATTGTACTGAGGAGTGGTATTAATAACTTGGAAAATGACCATTGGAGATGCTCGGGAGCTGAACCTGAGGCCTCCTATATGTAAGACACACGTACTATCACTGAACTACATCTCCTCATGCCAAGAGATATTTGTGTGGTCCTCCAAGTACTATTGCAGTATCTGAAAACAATAAAAATATGGAAATAA-AAAAATAATTTTAAAATTTAAAAGGTggccgggcacggtagctcgtgcttgta-atcgcagcagtttggaagg-cggaggcgggcagatcatttaagaacagaagttcgaggccagc
i chlSab2.chr17            T 11629 C 0
s manLeu1.NW_012104165v1     1930994 362 +   2316924 -TCACGTGTTTACTTCTCATGTGGCAGGCAACGAAAAGAGAGTAAGACACCTGAATGTGCATTGTACTGAGGAGTGGTATTAAGAACTTGGAAACTGACCGTtggaggtgctcgagagctgaacctgaggcctcctatatgtaaggcacacgtactatcgctgaactacatctccTCATGCCAAGAGATATTTGTGTGGTCCTCCAAGTACTATTGCAGTATATGAAAACAATAAAAATATGGAAAT-A-AAAAATAATTTTAAAATTTAAAAGGTggctgggcacggtacctcatgcttgta-atcgcagcagtttggaagg-cggaggcgggcaggtcatttaagaacagaagttcgaggccagc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1803763 362 -   3067355 -TCACGTGTTTACTTCTCATGCGGCAGGCAATGAAAAGAGAGTAAGACACCTGAGTGTGCATTGTACTGAGGAGTGGTATTAAGAACTTGGAAACTGACtgttggaggtgcttgggagctgaacctgaggcctcctatatgtaaggcacatgtactatcgttgaactacatctccTCATGGCAAGAGATATTTGTGTGGTCCTCCAAGTACTATTGCAGTATATGAAAACAATAAAAATATGGAAAT-A-AAAAATAATTTTAAAATTTAAAAGGTggccgagcacggtagctcatgcttgta-atcgcagcagtttggaagg-cggaggcgggcagatcatttaagaacagaagttcgaggccagc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171344235 363 - 171630274 GTCACATGTTTACTTCACGTGGGACGGGCAATGAAAAGAGAGCAAGACACCCAAGGGTACGTTGTACTGAAGAGTGGTATTAAGAACTCAGAAACTGACAATCggaggtgctcaggagc-gaacctgaggcctcctgtatgtaaggcacacgttctatcactgaacaacattcccTTATGCCAAGAGGTATCTGTGTGGTCCTCCAAGTACTAATGCAGTATAGGAAAACAGTAAAAATAGGAAAAT-AGAAAAATAATTTAAACACGAAAAAGGTggccgggcacagtacctcatgcttgta-ataccaggagtttggaagg-tggaggcgggcagatcacttaaggtcagaagttccagaccagt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            177319 363 -    375362 GTCATGTGTTTACTTCTCACGGAACAGGCAATGAAAAGAGAGTAAGACCCCTGAGTGTGCGTTGTACTAAAGAGTGGTATTAAGAACTCGGAAACTGACCATtggaggtgctcaggagctgaacctgaggcctcctgcacgtaaggcacacattctgtcacggaactacattcccTTATGCCAAGAGACAT-GGTGTGGCCCTCCAAGTACTACTGCAGTATAGGAGAACGATAAAAATAGGAAAAT-AGGAAAATAATTTAAAAACTAAAAAGGTggccaggcacagtagctcatgattgtc-ataccagcagtttggaagg-cagaggcaggcagatcacctaaggtcagaagttcgagaccagc
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      168750 364 -    373274 GTCACGTGTTTATTTCTCATGGGACAGGCAATGAAAATAGAGTAAGACACCTGAGTGTGCGTTGTACTAAAGAGTGGTATTAAGAACTCAGAAGCTGACCACtggaggtgctcaggagctgaacctgaggcctcctgcatataaggcacacgttctatcactgaactacattcccTTATGCCAAGAGATATTTGTGCAGTCCTCCAAGTTCTACTGCAGTATAGGAAAACAATAAAAATATGAAAAT-AGAAAAATAATTTAAAAACTAAAAAGGTggccaggcacagtagctcatgcttgta-ataccagcagtttggaagg-tggaggcaggcagatcacctaaggtcagaagtttgagaccagc
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      114121 364 -    285216 GTCACGTGTTTACTTCTCACGGGACAGGCAATGAAAAGAGAGTAAGACACCCAAGAGTACGTTGTACTAAAGAGTGGTATTAAGAACTCAGAAACTGACCATtggaggtgctcaggagctgaacctgaggcctcctgtatgtcaggcacacgttctatcactgaactgcattcccTTATGCCAAGAGATACTTGTGTGGTCCTCCAAGTACTACTCCAGTATAGGAAAACAATAGAAATATGAACAT-AGAAAAATAATTTAAAAACTAAAAAGGTggccaggcacagtagctcatgcttgta-ataccagcagtttggaagg-cggaggtgggcagatcacttaaggtcagaagttcaagaccagc
i aotNan1.NW_018494050v1   I 1 I 314
e canFam3.chr35             25854729 1336 +  26524999 I
e otoGar3.GL873742           1488286 3828 -   2232465 I

a score=182003.000000
s hg38.chr6_GL000254v2_alt     98550 23 +   4827813 cgagccaacaaggtgaaac-cctg
s panTro5.chr6              29078670 23 + 175400573 cgagccaacaaggtgaaac-cctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29313117 23 + 173848474 cgagccaacaaggtgaaac-cctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5113263 23 +   6154872 cgagccaacatggtgaaac-cctg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74118274 23 + 122973662 tgagccaacatggtgaaac-cctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29295732 23 + 172585720 cgagccaacatggtgaaac-cctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28945568 23 - 170955103 cgagccaacatggtgaaac-cctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1927642 23 -   2996164 cgagccaacatggtgaaac-ccta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1805051 24 -   2157725 caaagcaacagagtgaaacgcctg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28249523 23 -  71996105 cgagccaacatggtgaaac-cctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1931356 23 +   2316924 caagccaacatggtgaaac-cctg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1804125 23 -   3067355 tgagccaacatggtgaaac-cctg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171344598 23 - 171630274 tgggccaacatggtaaaac-actg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            177682 23 -    375362 tgggccaacatggtaaaac-actg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      169114 23 -    373274 tgagccaacatggtaaaac-actg
i cebCap1.NW_016108108v1   C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      114485 314 -    285216 I

a score=1553193.000000
s hg38.chr6_GL000254v2_alt     98573 175 +   4827813 tctctactaaaa-at-acaaaaattagccgggc-gtgatggcacgtgcctgtaaccccagctgctca-g--aggttgag--gcaggagaatct-cttgaacctgggaggtggaggctgcagtgagcggagatggcgccactgcactccagccttggggac-agagtgagactc-tgtctcaaaaaa
s panTro5.chr6              29078693 175 + 175400573 tctctactaaaa-at-acaaaaattagccgggc-gtgatggcacgtgcctgtaaccccagctgctca-g--aggttgag--gcaggagaatct-cttgaacctgggaggtggaggctgcagtgagcggagatggcgccactgcactccagccttggagac-agagtgagactc-tgtctcaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29313140 172 + 173848474 tctctactaaaa-at-acaaaaattagccgggc-gtgatggcacgtgcctgtaaccccagctgctca-g--aggttgag--gcaggagaatct-cttgaacctgggaggtggaggctgcagtgagcggagatggcgccactgcactccagccttggggac-agagtgagactc-tgtctcaaa---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5113286 175 +   6154872 tctctactaaaa-at-acaaaaattagccggga-gtgatggcacgtgcctgtaaccccagctgctca-g--aggttgag--gcaggagaatct-cttgaacctgggaggtggaagctgcagtgagcggagatggcgccactgcactccagcctgggggat-agagtgagactc-tgtctcaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74118297 172 + 122973662 tctttactaaaa-at-acataaattagccgggc-atgatggcacgtgcctgtaatcctagctgctca-g--aggttgag--gcaggagaatct-cttgaacctggcaggtggaggctgcagtgagcggagatggcgccactgcactccagcctgggggac-agagtgagactc-tgtctcaaa---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29295755 175 + 172585720 tctctacttaaa-ac-acaaaaattagccaggc-atgatggcacacacctgtaatcccagctgctca-g--aggttgag--gcaggagaatct-cttgaacctgggaggtggaggctgcagtgagctgagatggtgccactgcactccagcccgggggac-agagtgagactc-tgtctcaaaaaa
i rheMac8.chr4             C 0 I 4
s macFas5.chr4              28945591 175 - 170955103 tctctacttaaa-ac-acaaaaattagccaggc-atgatggcacacacctgtaatcccagctgctca-g--aggttgag--gcaggagaatct-cttgaacctgggaggtggaggctgcagtgagctgagatggtgccactgcactccagcccgggggac-agagtgagactc-tgtctcaaaaaa
i macFas5.chr4             C 0 I 4
s macNem1.NW_012011356v1     1927665 175 -   2996164 tctctacttaaa-ac-acaaaaattagccaggc-atgatggcacacacctgtaatcccagctgctca-g--aggttgag--gcaggagaatct-cttgaacctgggaggtggaggctgcagtgacctgagatggtgccactgcactccagcccgggggac-agagtgagactc-tgtctcaaaaaa
i macNem1.NW_012011356v1   C 0 I 4
s cerAty1.NW_012001495v1     1805075 177 -   2157725 tctctacttaaacacaacaagaaattaccaggcgatgatgg-ac-cacctgt-atcccagctgctca-ggagggttgagcaggatgagaatctgcttgaacctggg-ggtggagactgcagggagtggagatg--gccactgcactccagccttgggga--agagtaggactcttgtctcaaaaaC
i cerAty1.NW_012001495v1   C 0 I 4
s chlSab2.chr17             28249546 175 -  71996105 tctctacttaaa-ac-acaaaaattagccgggc-atgatggcacacacctgtaatcccagctgctca-g--aggttgag--gcaggagaatct-cttgaacctgggaggtggaggctgcagtgagctgagatggcgccactgcactccagcctgggggac-agagtgagactc-tgtctcaaaaaa
i chlSab2.chr17            C 0 I 4
s manLeu1.NW_012104165v1     1931379 175 +   2316924 tctctacttaaa-ac-acaaaaattagccaggc-atgatggcacacacctgtaatcccagctgctca-g--aggttgag--gcaggagaatct-cttgaacctgggaggtggaggctgcagtgagctgagatggcgccactgcactccagcctgggggac-agagtgagactc-tgtctcaaaaaa
i manLeu1.NW_012104165v1   C 0 I 4
s colAng1.NW_012115566v1     1804148 175 -   3067355 tctctacttaaa-ac-acaaaaattcgccaggc-atgatggcacacacctgtaatcccagctgctca-g--aggttgac--gcaggagaatct-cttgaacctgggaggtggaggctgcagtgagctgagatggcgccactgcactccagcctgggggac-agagtgagactc-tgtctcaaaaaa
i colAng1.NW_012115566v1   C 0 I 4
s calJac3.chr4             171344621 176 - 171630274 tctctactgaaa-at-acaaaaattagtcgggc-atggtggcgtgcacctgtaatcccagctgctcagg--aggctgag--gcaggagaatct-cttgaacgtgggaggcagaggctgcagtgagctgagatcacacaactgcactccagcctggaagac-agagtgagactc-tgtctcaaaaaa
i calJac3.chr4             C 0 I 293
s saiBol1.JH378348            177705 176 -    375362 tctctactgaaa-at-acaaaaattagtcgggc-atgggggcatgcacctgtaatcctagctgctcaag--aggctgag--gcaggagaatct-cttgaacctgggaggcagaggctgcagtgagctgagatcacaccactgctttccagcctgggggac-agagtgacactc-tgtcttaaaaaa
i saiBol1.JH378348         C 0 I 294
s cebCap1.NW_016108108v1      169137 176 -    373274 tctctactgaaa-at-acaaaaattagttgggc-atggtggcgtgcacctgtaatcctagctgctcaag--aggctgag--gcagaagaatct-cttgagcctgggaggcagaggctgcagtgagctaagatcacactactgcattccagcctgggagac-agagtgagactc-tgcctcaaaaaa
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      114799 175 -    285216 tctctcctaaaa-at-ac-aaaattagctgggt-gtggtggtgcatgcctgtaatcccagctactcagg--aggctgag--gcaggagaatcg-cttgaacccaggaggcagaggttgcggtgagctgagatcatgccattgcactccagcctgggcaacaagagtgaaactc-catctgaaaaa-
i aotNan1.NW_018494050v1   I 314 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e otoGar3.GL873742           1488286 3828 -   2232465 I

a score=29588.000000
s hg38.chr6_GL000254v2_alt     98748 4 +   4827813 caaa
s panTro5.chr6              29078868 4 + 175400573 caaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29313312 3 + 173848474 -aaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5113461 4 +   6154872 caaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29295934 4 + 172585720 caaa
i rheMac8.chr4             I 4 C 0
s macFas5.chr4              28945770 4 - 170955103 caaa
i macFas5.chr4             I 4 C 0
s macNem1.NW_012011356v1     1927844 4 -   2996164 caaa
i macNem1.NW_012011356v1   I 4 C 0
s cerAty1.NW_012001495v1     1805256 4 -   2157725 CAAC
i cerAty1.NW_012001495v1   I 4 C 0
s chlSab2.chr17             28249725 4 -  71996105 caaa
i chlSab2.chr17            I 4 C 0
s manLeu1.NW_012104165v1     1931558 4 +   2316924 caaa
i manLeu1.NW_012104165v1   I 4 C 0
s colAng1.NW_012115566v1     1804327 4 -   3067355 caaa
i colAng1.NW_012115566v1   I 4 C 0
s saiBol1.JH378348            178175 4 -    375362 caaa
i saiBol1.JH378348         I 294 C 0
s cebCap1.NW_016108108v1      169313 4 -    373274 caaa
i cebCap1.NW_016108108v1   C 0 I 295
s aotNan1.NW_018494050v1      114974 4 -    285216 caaa
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e calJac3.chr4             171344797 293 - 171630274 I
e nomLeu3.chr1a             74118469 0 + 122973662 C

a score=30566.000000
s hg38.chr6_GL000254v2_alt     98752 14 +   4827813 caaacaaaa-aCC-CA
s panTro5.chr6              29078872 14 + 175400573 caaacaaaa-aCC-CA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29313315 14 + 173848474 caaacaaaa-aCC-CA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5113465 14 +   6154872 caaacaaaa-aCC-CA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74118469 13 + 122973662 -aaccaaaa-acc-aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29295938 15 + 172585720 caaacagaa-acaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28945774 15 - 170955103 caaacagaa-acaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1927848 15 -   2996164 caaacaaaa-acaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1805260 15 -   2157725 AACTAAAAA-CCAGAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28249729 15 -  71996105 caaacaaaa-accaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1931562 15 +   2316924 caaacaaaa-accaaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1804331 15 -   3067355 caaacaaaa-accaaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171345090  9 - 171630274 caaacaaaC-------
i calJac3.chr4             I 293 C 0
s saiBol1.JH378348            178179  9 -    375362 caaacaaac-------
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      114978 10 -    285216 caaacaaaca------
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e cebCap1.NW_016108108v1      169317 295 -    373274 I

a score=267567.000000
s hg38.chr6_GL000254v2_alt     98766 30 +   4827813 AAAACCCTA-AAAAGGTATTTCTCCAATCT--A
s panTro5.chr6              29078886 30 + 175400573 AAAACCCTA-AAAAGGTATTTCTCCAATCT--A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29313329 30 + 173848474 AAAACCCTA-AAAAGGTATTTCTCCAATCT--A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5113479 30 +   6154872 AAAACCCTA-AAAAGGTATTTCTCCAATCC--A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74118482 30 + 122973662 aaaaCCCTA-AAAAGGTATTTCTCCAATCT--A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29295953 30 + 172585720 aAAACCCTA-AAAAGGTATTTCTCCAATCT--A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28945789 30 - 170955103 aAAACCCTA-AAAAGGTATTTCTCCAATCT--A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1927863 30 -   2996164 aAAACCCTA-AAAAGGTATTTCTCCAATCT--A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1805275 31 -   2157725 AAAACCCTAGAAAAGGTATTTCTCCAATCT--G
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28249744 30 -  71996105 aaaACCCTA-AAAAGGTATTTCTCCAATCT--A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1931577 30 +   2316924 aaaACCCTA-AAAAGGTATTTCTCCAATCT--A
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1804346 30 -   3067355 aaaACCCTA-AAAAGGTATTTCTCCAATCT--A
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171345099 29 - 171630274 CAAACCCTG-AAAAGGCATTTCTCCAATCT---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            178188 29 -    375362 aaaaCCCGG-AAAAGGTATTTCTACACTCT---
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      169612 30 -    373274 aaaaCCCTG-AAAAGGTATTTCTCCAATCTA--
i cebCap1.NW_016108108v1   I 295 I 36
s aotNan1.NW_018494050v1      114988 29 -    285216 -aaaCCCTG-AAAAGGTATTTCTCCAATCT-A-
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e otoGar3.GL873742           1488286 3828 -   2232465 I

a score=255152.000000
s hg38.chr6_GL000254v2_alt     98796 41 +   4827813 AAGATGT-AAAAAATTAAATAAAATGAAAAAT-AAAGGAATAT
s panTro5.chr6              29078916 41 + 175400573 AAGATGC-AAAAAATTAAATAAAATGAAAAAT-AAAGGAATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29313359 41 + 173848474 AAGATGC-AAAAAATTAAATAAAATGAAAAAT-AAAGGAATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5113509 41 +   6154872 AAGATGT-AAAAAATTAAATAAAATGAAAAAT-AAAGGAATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74118512 42 + 122973662 AAGATGTAAAAAAATTAAATAAAATGTAAAAT-AAAGGAATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29295983 41 + 172585720 AAGATGT-AAAAAATTAAATAAAATGAAAAAT-AAAGGAATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28945819 41 - 170955103 AAGATGT-AAAAAATTAAATAAAATGAAAAAT-AAAGGAATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1927893 41 -   2996164 AAGATGT-AAAAAGTTAAATAAAATGAAAAAT-AAAGGAATAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1805306 41 -   2157725 AAGATGT-AAAAAATTAAAT-AAATGAAAAGTAAAAGGAATAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28249774 41 -  71996105 AAGATGT-AAAAAATAAAATAAAATGAAAAAT-AAAGGAATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1931607 41 +   2316924 AAGATGT-AAAAAATTAAATAAAATGAAAAGT-AAAGGAATAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1804376 41 -   3067355 AAGATGT-AAAAAATTAAATAAAATGAAAAAT-AAAGGAATAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171345128 31 - 171630274 -ATTTGT-AAAAAGTT-----AAATAAA-----AGTATAATAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            178217 36 -    375362 -ATTTGC-aaaaaattaaataaaataaa-----aGAATAGTAT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      115017 30 -    285216 --TTTGT-AAAAAATT-----AAATAAA-----AGAATAATAT
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25854729 1336 +  26524999 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e cebCap1.NW_016108108v1      169642 36 -    373274 I

a score=47793.000000
s hg38.chr6_GL000254v2_alt     98837 6 +   4827813 CTCGTT
s panTro5.chr6              29078957 6 + 175400573 CTCGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29313400 6 + 173848474 CTCGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5113550 6 +   6154872 CTCGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74118554 6 + 122973662 CTCATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29296024 6 + 172585720 CTCACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28945860 6 - 170955103 CTCACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1927934 6 -   2996164 CTCACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1805347 6 -   2157725 CTCACT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28249815 6 -  71996105 CTCACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1931648 6 +   2316924 CTTACT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1804417 6 -   3067355 GTCACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171345159 6 - 171630274 CTCACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            178253 6 -    375362 CTCACT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      115047 6 -    285216 CTCACT
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25856065 6 +  26524999 CTTGCT
i canFam3.chr35            I 1336 C 0
e otoGar3.GL873742           1488286 3828 -   2232465 I
e cebCap1.NW_016108108v1      169642 36 -    373274 I

a score=1194437.000000
s hg38.chr6_GL000254v2_alt     98843 127 +   4827813 ATATTCTGTGGG-------TCTCCATTCCTGTGTTCATTGTTTTAGCACTAAGTGTTGGGTTTAGAAGCAGGATTTGTGACCATTTTAAGTTGGA-AGACCCCC---A------------------------GCTGTGGGGGATATTGAAGTTTTGGCAAAT
s panTro5.chr6              29078963 127 + 175400573 ATATTCTGTGGG-------TCTCCATTCCTGTATTCATTGTTTTAGCACTAAGTGTTGGGTTTAGAAGCAGGATTTGTGACCATTTTAAGTTGGA-AGACCCCC---A------------------------GCTGTGGGGGATATTGAAGTTTTGGCAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29313406 127 + 173848474 ATATTCTGTGGG-------TCTCCATTCCTGTGTTCATTGTTTTAGCACTAAGTGTTGGGTTTAGAAGCAGGATTTGTGACCATTTTAAGTTGGA-AGACCCCC---A------------------------GCTGTGGGGGATATTGAAGTTTTGGCAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5113556 127 +   6154872 ATATTCTGTGGG-------TCTCCATTCCTGTGTTCATTGTTTTAGCACTAAGTGTTGGGTTTGGAAGCAGGATTTGTGACCATTTTAAGTTGGA-AGACCCCC---A------------------------GCTGTGGGGGATACTGAAGTTTTGGCAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74118560 126 + 122973662 ATATTCTGT-GG-------TCTCCATTCCTATGTTCATTGTTTTAGCACTAAGTGTTGGGTGTAGAAGCAGGATTTGTGACCATTTTAAGTTAGA-AGACCCCC---A------------------------GCTGTGGGGGATATTAAAATTTTGGCAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29296030 127 + 172585720 CTATTCTGTGGG-------TCACCATTCCTGGGTTCATTGTTTTAGCGCTAAGTGTTGGGTGTAGAAGCAGGATTTGTGACCATTTTAAGTTAGA-AGACCCCC---A------------------------GCTGTGGGGGATATTGAAATTTTGGCAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28945866 127 - 170955103 CTATTCTGTGGG-------TCACCATTCCTGGGTTCATTGTTTTAGCACTAAGTGTTGGGTGTAGAAGCAGGATTTGTGACCATTTTAAGTTAGA-AGACCCCC---A------------------------GCTGTGGGGGATATTGAAATTTTGGCAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1927940 127 -   2996164 CTATTCTGTGGG-------TCACCATTCCTGGGTTCATTGTTTTAGCACTAAGTGTTGGGTGTAGAAGCAGGATTTGTGACCATTTTAAGTTAGA-AGACCCCC---A------------------------GCTGTGGGGGATATTGAAATCTTGGCAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1805353 127 -   2157725 CTATTCTGTGGG-------TCACCATTCCTGGGTTCATTGTTTTAGCACTAAGTGTTGGGTGTAGAAGCAGGATTTGTGACCATTTTAAGTTAGA-AGACCCCC---A------------------------ACTGTGGGGGATATTGAAATTTTGGCAAAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28249821 127 -  71996105 CTGTTCTGTGGG-------TCACCATTCCTGGGTTCATTGTTTTAGCACTAAGTGTTGGGTGTAGAAGCGGGATTTGTGACCATTTTAAGTTAGA-AGACCCCC---A------------------------GCTGTGGGGGATATTGAAATTTTGGCAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1931654 127 +   2316924 CTATTCTGTGGG-------TAACCATTCCTGGGTTCATTGTTTTAGCACTAAGTGTTGGGTGTAGAAGCAGGATTTGTGACCATTTTAAGTTAGA-AGACCCCC---A------------------------ACTGTGGGGGATATTGAAATTTTGGCAAAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1804423 123 -   3067355 CTATTCTGTGGG-------TCACCATTTCTGGGTTCATTGTTTTAGCACTGAGTGTTGGGTGTAGAAGCAGGATTTGTGACCATTTTAAGTTAGA-AGACCCCC---A------------------------GCTGTAGGGGATATTGTAATTTTGGC----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171345165 130 - 171630274 ATATTCTATGTG-------TCCCCATTCCTGTGCTGATTGTTTTAGCACTAAGTGTTGGCTGTAGAAGTGGGATTTGTGACCATTTTAAGACAGA-AGACCACAGGGA------------------------GCTGTGGGGAATACTGAAATGTTGGCAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            178259 129 -    375362 GTATTCTGTGTG-------TCCCCATTCCTGTGTTCATTGTTTTAGCTCTAAGTGTTGGGTGTACAGG-AGGATTTGTGACCATTTTAAGATAGA-AGACCACAGGGA------------------------GCTGTGGGGAATACTAAAATTTTGGCAAAT
i saiBol1.JH378348         C 0 I 315
s cebCap1.NW_016108108v1      169678 130 -    373274 ATATTCTGTGTG-------TCCCCATTCCTGTGTTCACTGTTTTAGCTCTAAGTGTTGGGTGTAGAAGGGGGATTTGTGACCATTTTAAGATAGA-AGACCACAAGGA------------------------GCTGTGGGGAATACTAAAATCTTGGCAAAT
i cebCap1.NW_016108108v1   I 36 C 0
s aotNan1.NW_018494050v1      115053 130 -    285216 ATATTCTATGCA-------TCCCCATTCCTGTGTTGATTGTTTTAGCACTAAGTGTTGGGTGTAGAAGCGGGCTTTGTGACCATTTAAAGATAGA-AGACCACAGGGA------------------------GCTGTGGGGAATACTAAAATTTTGGCAAAT
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25856071 151 +  26524999 GCATTCCGGGCGCTCCTCCCCACAACTCTGGAGCCCGTCCCCTCAGCAGCAAGGGCTGG----AGGCGCAGGATGCGTGAC---TCCCGGTTAGACAGAGCCCC---AGGGAGTCCGCCCCAGGGAGTCCGCGGGGCGGGGGGTACTGATGT-TTAGCAAAC
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1488286 3828 -   2232465 I

a score=6390775.000000
s hg38.chr6_GL000254v2_alt     98970 648 +   4827813 AAAGCTTGAAATGGAACGCAGAATACTGGAAACTTGCGTTAGAAAACTGACCAGCTTTTTCCTGAATAAAGCACTTCTGCTATTGCTGTTTGCT------TCACAGGAATGG-TAAGAGCAAAACTTTGATGAGAAAACCCCAGGTGAG-AATGAAAACCACATGCAACCTGTTATTCATTGCCAA--GGGGTTCTTGATTGTACTACAGCATGAA-GGCAACTGAGGAGGTTCATGGAGTAGTCCAGAAT---AATGTTCAAGACATGAAATAAATAGCAGATTCAAGGATGGAGAAAAACTTTGAAATTTTGAAAGCACATTCATAGGTAGCTAGACACAGGATTCAAAGACTTATTGGATTTATAGAGCAAGCCAGAAAGTGGGGAATCCATAAAAGAGAGCC-------TCAACAAACAGGA-----GGAAAAAAAGCAGAATAGAGATGCTTATTGTTCTTTGAAGGAATGGACAAGATATTAGGAGGAGGAGGTGAGTTTGTTTGGGAACGTGTTGAACTTACCATATTCTTCCGTAGGAT--CCTGCCCATTGGTGAAACACAGTGAACTTAGCCCAGTGCTCTGATCTGAATACGTGGAGGTGGGAGTGAGTAGAAGGCACCAATACAGT-GTGAGTACAATGAGAACTCAAAGTGTCCTTTGAGATAT
s panTro5.chr6              29079090 648 + 175400573 AAAGCTTGAAATGGAACACAGAATACTGGAAACTTGCGTTAGAAAACTGACCAGCTTTTTCCTGAATAAAGCACTTCTGCTATTGCTGTTTGCT------TCACAGGAATGG-TAAGAGCAAAACTTTGATGAGAAAACCCCAGGTGAG-AATAAAAACCACATGCAACCTGTTATTCATTGCCAA--GGGGTTCTTGATTGTACTACAGCATGAA-GGCAACTGAGGAGGTTCATGGAGTAGTCCAGAAT---AATGTTCAAGACATGAAATAAATAGCAGATTCAAGGATGGAGAAAAACTTTGAAATTTTGAAAGCACATTCATAGGTAGCTAGACACAGGATTCAAAGACTTATTGGATTTATAGAGCAAGCCAGAAAGTGGGGAATCCATAAAAGAGAGCC-------TCAACAAACAGGA-----GGAAAAAAAGCAGAATAGAGAGGCTTATTGTTCTTTGAAGGAATGGACAAGATATTAGGAGGAGGAGGTGAGTTTGTTTGGGAACGTGTTGAACTTACCATATTCTTCCGTAGGAT--CCTGCCCATTGGTGAAACACAGTGAACTTAGCCCAGTGCTCTGATCTGAATACGTGGAGGTGGGAGTGAGTAGAAGGCACCAATAGAGT-GTGAGTACAATGAGAACTCAAAGTGTCCTTTGAGATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29313533 648 + 173848474 AAAGCTTGAAATGGAACACAGAATACTGGAAACTTGCGTTAGAAAACTGACCAGCTTTTTCCTGAATAAAGCACTTCTGCTATTGCTGTTTGCT------TCACAGGAATGG-TAAGAGCAAAACTTTGATGAGAAAACCCCAGGTGAG-AATAAAAACCACAGGCAACCTGTTATTCATTGCCAA--GGGGTTCTTGATTGTACTACAGCATGAA-GGCAACTGAGGAGGTTCATGGAGTAGTCCAGAAT---AATGTTCAAGACATGAAATAAATAGCAGATTCAAGGATGGAGAAAAACTTTGAAATTTTGAAAGCACATTCATAGGTAGCTAGACACAGGATTCAAAGACTTATTGGATTTATAGAGCAAGCCAGAAAGTGAGGAATCCATAAAAGAGAGCC-------TCAACAAACAGGA-----GGAAAAAAAGCAGAATAGAGAGGCTTATTGTTCTTTGAAGGAATGGACAAGATATTAGGAGGAGGAGGTGAGTTTGTTTGGGAACGTGTTGAACTTACCATATTCTTCCGTAGGAT--CCTGCCCATTGGTGAAACACAGTGAACTTAGCCCAGTGCTCTGATCTGAATACGTGGAGGTGGGAGTGAGTAGAAGGCACCAATAGAGT-GTGAGTACAATGAGAACTCAAAGTGTCCTTTGAGATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5113683 648 +   6154872 AAAGCTTGAAATGGAACACAGAATACTGGAAACTTGCGTTAGAAAACTGACCAGCTTTTTCCTGAATAAAGCACTTCTGCTATTGCTGTTTGCT------TCACAGGAATGG-TAAGAGCAAAACTTTGATGAGAAAACCCCAGGTGAG-AATAAAAACCACATGCAACCTGTTATTCATTGCCAA--GGGGTTCTTGATTGTACTACAGCATGAA-GGCAACTGAGGAGGTTCATGGAGTAGTCCAGAAT---AATGTTCAAGACATGAAATAAATAGCAGATTCAAGGATGGAGAAAAACTTTGAAATTTTGAAAGCACATTCATAGGTAGCTAGACACAGGATTCAAAGACTTATTGGATTTATAGAGCAAGCCAGAAAGTGGGAAATCCATAAAAGAGAGCC-------TCAACAAACAGGA-----GGAAAAAAAGCAGAATAGAGAGGCTTATTGTTCTTTGAAGGAATGGACAAGATATTAGGAGGAGGAGGTGAGTTTGTTTGGGAACGTGTTGAACTTACCATATTCTTCCGTAGGAT--CCTGCCCATTGGTGAAACACAGTGAACTTAGCCCAGTGCTCTGATCTGCATACGTGGAGGTGGGAGTGAGTAGAAGGCACCAATAGAGT-GTGAGTACAATGAGAACTCAAAGTGTCCTTTGGGATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74118686 647 + 122973662 AAAGCTTGAAATGGAACACAGAATACTGGAAACTTGCATTAGAAAACTGACCAGCTTTTTCCTGAATAAAACACTTCTGCTATTGCTGTTTGCT------CCACAGGAATGG-TAAGAGCAAAACTTTGATTAGAAAACCCCAGGTGAG-AGTAAAATCCACATGCAACTTGTTA-TCATTGCCAA--GGGGTTCTTGATTGTATTACAGCATGAA-GGCAACTGAGGAGGTTCATGGAGTAGTCCAGAAT---AATGTTCAAGACATGAAATAAATAGCAGATTCAAGGATGGAGAAAAACATTGAAATTTTGAAGGCACGTTCATAGGTAGCTAGACACAGGATTCGAAGACTTACTGGATTTATAGAGCAAGCCAGAAAGTGGGGAATCCATAAAAGAGAGCC-------TCAACAAACAGGA-----GGAAAAAAAGCAGAATAGAGAGGCTTATTGTTCTTTGAAGGAATGGACAAGATATTAGGAGGAGGAGGTGAGTTTGTTTGGGAACGTGTTGAACCTACCATATTCTTCCGTAGGAT--CCTGCCCATTGATGAAACACAGTGAACTCAGCCCAGTGTTCTGATCTGAATACGTGGAGGTGGGAGTGAGTAGAAGGCGCCAATAGAGT-GTGAGTACAATGAGAACTCAAAGTGTCCTTTGAGATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29296157 647 + 172585720 AAAGTTTGAAATGGAACACAACATACTGGAAACTTGCATTAGAAAACTGACCAGCTTTTTCCTGAATAAAACACTTCTGCAATTGCCGTTTGCT------CCTCAGGAATGG-TAAGAGCAAAACTTTGATGAGAAAACCCCAGGTGAG-AATAAAA-CCACATGCAACTTGTTATTCATTGCCAA--GGGGTTCTTGACTGTATTACAGCATGAA-GGCACCTGAGGAGGTTCATGGAGTAGTCCAGAAT---AATGTTCAAGACATGAAGTAAATAGTAGCTTCAAGGATGGAGAAAAACTTTGAAATTTTGAAAGCACGTTCATAGGTAGCTAGACACAGGATTCGAAGACTTATTGGATCTATAGAGCAAGCCAGAAAGTGGGGAATCCGTAAAAGAAAGCC-------TCAACAAACAGGA-----GGAAAAAAAGCAGAATAGAGAGGCTTATTGTTCTTTGAAGGAATGAATAAGATATTAGGAGGAGGAGGCGAGTTTGTTTGGGAACGTGTTGAACTTACCATATTCTTCCTTAGGAT--CCTGCCCATTGATGAAACACAGTGAACTCAGCCCAGTGCTCTGACCTGAATACGTGGAGGTGGGAGTGAGTAGAAGGCACCAATAAAGT-GTGAGTACAATGAGAACTCAAAGTGTCCTTTGAGATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28945993 647 - 170955103 AAAGTTTGAAATGGAACACAAAATACTGGAAACTTGCATTAGAAAACTGACCAGCTTTTTCCTGAATAAAACACTTCTGCTATTGCCGTTTGCT------CCTCAGGAATGG-TAAGAGCAAAACTTTGATGAGAAAACCCCAGGTGAG-AATAAAA-CCACATGCAACTTGTTATTCATTGCCAA--GGGGTTCTTGACTGTATTACAGCATGAA-GGCACCTGAGGAGGTTCATGGAGTAGTCCAGAAT---AATGTTCAAGACATGAAGTAAATAGTAGCTTCAAGGATGGAGAAAAACTTTGAAATTTTGAAAGCACGTTCATAGGTAGCTAGACACAGGATTCGAAGACTTATTGGATCTATAGAGCAAGCCAGAAAGTGGGGAATCCGTAAAAGAAAGCC-------TCAACAAACAGGA-----GGAAAAAAAGCAGAATAGAGAGGCTTATTGTTCTTTGAAGGAATGAATAAGATATTAGGAGGAGGAGGCGAGTTTGTTTGGGAACGTGTTGAACTTACCATATTCTTCCTTAGGAT--CCTGCCCATTGATGAAACACAGTGAACTCAGCCCAGTGCTCTGACCTGAATACGTGGAGGTGGGAGTGAGTAGAAGGCACCAATAAAGT-GTGAGTACAATGAGAACTCAAAGTGTCCTTTGAGATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1928067 647 -   2996164 AAAGTTTGAAATGGAACACAAAATACTGGAAACTTGCATTAGAAAACTGACCAGCTTTTTCCTGAATAAAACACTTCTGCTATTGCCGTTTGCT------CCTCAGGAATGG-TAAGAGCAAAACTTTGATGAGAAAACCCCAGGTGAG-AATAAAA-CCACATGCAACTTGTTATTCATTGCCAA--GGGGTTCTTGACTGTATTACAGCATGAA-GGCACCTGAGGAGGTTCATGGAGTAGTCCAGAAT---AATGTTCAAGACATGAAGTAAATAGTAGCTTCAAGGATGGAGAAAAACTTTGAAATTTTGAAAGCACGTTCATAGGTAGCTAGACACAGGATTCGAAGACTTATTGGATCTATAGAGCAAGCCAGAAAGTGGGGAATCCGTAAAAGAAAGCC-------TCAACAAACAGGA-----GGAAAAAAAGCAGAATAGAGAGGCTTATTGTTCTTTGAAGGAATGAATAAGATATTAGGAGGAGGAGGCGAGTTTGTTTGGGAACGTGTTGAACTTACCATATTCTTCCTTAGGAT--CCTGCCCATTGATGAAACACAGTGAACTCAGCCCAGTGCTCTGACCTGAATACGTGGAGGTGGGAGTGAGTAGAAGGCACCAATAAAGT-GTGAGTACAATGAGAACTCAAAGTGTCCTTTGAGATAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1805480 645 -   2157725 AAAGTTTGAAATGGAACACAAAATACTGGAAACTTGCATTTGAAAACTGACCAGCTTTTTCCTGAATAAAACACTTCTGCTATTGCCGTTTGCT------CCTCAGGAATGG-TAAGAGCAAAACTTTGATGAGAAAACCCCAGGTGAG-AATAAAA-CCACATGCAACTTGTTATTCATTGCCAA--GGGGTTCTTGACTGTATTACAGCATGAA-GGCACCTGAGGAGGTTCATGGAGTAGTCCAGAAT---AATGTTCAAGACATGAAGTAAATAGTAGCTTCAAGGATGGAGAAAAACTTTGAAATTTTGAAAGCACGTTCATAGGTAGCTAGACACAGGATTCGAAGACTTATTGGATCTATAGAGCAAGCCAGAAAGTGGGGAATCCATAAAAGAAAGCC-------TCAACAAACAGGA-----GGAAAAAAAGCAGAATAGAGAGGCTTATTGTTCTTTGAAGGAATGAATAAGATATTAGGAGGAGGAGGCGAGTTTGTTTGG--ACGTGTTGAACTTACCATATTCTTCCTTAGGAT--CCTGCCCATTGATGAAACACAGTGAACTCAGCCCAGTGCTCTGACCTGAATACGTGGAGGTGGGAGTGAGTAGAAGGCACCAATAAAGT-GTGAGTACAATGAGAACTCAAAGTGTCCTTTGAGATAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28249948 647 -  71996105 AAAGTTTGAAATGGAACACAAAATACTGGAAACTTGCATTAGAAAACTGACCAGCTTTTTCCTGAATAAAACACTTCTGCTACTGCCGTTTGCT------CCTCAGGAATGG-TAAGAGCAAAACTTTGATGAGAAAACCCCAGGTGAG-AATAAAA-GCACATGCAACTTGTTATTCATTGCCAA--GGGGTTCTTGACTGTATTACAGCATGAA-GGCAACTGAGGAGGTTCATGGAGTAGTCCAGAAT---AATGTTCACGACATGAAGTAAATAGTAGATTCAAGGATGGAGAAAAACTTTGAAATTTTGAAAGCACGTTCATAGGTAGCTAGACACAGGATTCGAAGACTTATTGGATCTATAGAGCAAGCCAGAAAGTGGGGAATCCGTAAAAGAAAGCC-------TCAACAAACAGGA-----GGAAAAAAAGCAGAATAGAGAGGCTTATTGTTCTTTGAAGGAATGAATAAGATATTAGGAGGAGGAGGCGAGTTTGTTTGGGAACGTGTTGAACTTACTATATTCTTCCTTAGGAT--CCTGCCCATTGATGAAACACAGTGAACTCAGCCCAGTGCCCTGACCTGAATACGTGGAGGTGGGAGTGAGTAGAAGGCACCAATAAAGT-GTGAGTACAATGAGAACTCAAAGTGTCCTTTGAGATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1931781 647 +   2316924 AAAGTTTGAAATGGAACACAAAATACTGGAAACTTGCATTAGAAAACTGACCAGCTTTTTCCTGAATAAAACACTTCTGCTACTGCCGTTTGCT------CCTCAGGAATGG-TAAGAGCAAAACTTTGATGAGAAAACCCCAGGTGAG-AATAAAA-CCACATGTAACTTGTTATTCATTGCCAA--GGGGTTCTTGACTGTATTACAGCATGAA-GGCAACTGAGGAGGTTCATGGAGTAGTCCAGAAT---AATGTTCAAGACATGAAGTAAATAGTAGCTTCAAGGATGGAGAAAAACTTTGAAATTTTGAAAGCACGTTCATAGGTAGCTAGACACAGGATTCGGAGACTTACTGGATCTATAGAGCAAGCCAGAAAGTGGGGAATCCGTAAAAGAAAGCC-------TCAACAACCAGGA-----GGAAAAAAAGCAGAATAGAGAGGCTTATTGTTCTTTGAAGGAATGAATAAGATATTAGGAGGAGGAGGCGAGTTTGTTTGGGAACGTGTTGAACTTACCATATTCTTCCTTAGGAT--CCTGCCCATTGATGAAACACAGTGAACTCAGCCCAGTGCTCTGACCTGAATACGTGGAGGTGGGAGTGAGTAGAAGGCACCAATAAAGT-GTGAGTACAATGAGAACTCAAAGTGTCCTTTGAGATAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1804546 647 -   3067355 AAAGTTTGAAATGGAACACAAAATACTGGAAACTTGCATTAGAAAAATGACCAGCTTTTTCCTGAATAATACACTTCTGCTATTGCCGTTTGCT------CCTCAGGAATGG-TAAGAGCAAAACTTTGATGAGAAAACCCCAGGTGAG-AATAAAA-CCACATGCAACTTGTTATTCATTGCCAA--GGGGTTCTTGACTGTATTACAGCATGAA-GGCAACTGAGGAGGTTCATGGAGTAGTCCAGAAT---AATGTTCAAGACATGAAATAAATAGTAGATTCAAGGATGGAGAAAAACTTTGAAATTTTGAAAGCACGTTCATAGGTAGCTAGACACAGGATTCGAAGACTTATTGGATCTACAGAGCAAGCCAGAAAGTGGGGAATCCGTAAAAGAAAGCC-------TCAACAAACAGGA-----GGAAAAAAAGCAGAATAGAGAGGCTTATTGTTCTTTGAAGGAATGAACAAGATATTAGAAGGAGAAGGTGAGTTTGTTTGGGAACGTGTTGAACTTACCATATTCTTCCTTAGGAT--CCTGCCCATTGATGAAACACAGTGAACTCAGCCCAGTGCTCTGATCTGAACACGTGGAGGTGGGAGTGAGTAGAAGGCACCAATAAAGT-GTGAGTACAATGAGAACTCAAAGTGTCCTTTGAGATAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171345295 643 - 171630274 AAAGCTTGAAATGGAACACAAAATACTGGAAATTTGCATTAGAAAACTGACCAGCTTTTCCCTGAATAAAACACTTTTGCTCCTGCTGTTTGCT------CCACAGGAATGG-TAAGAGCAAAACTTTGATGAGAGAATCCCAGGTGAA-AATAAAAACCACATGTGATTTGTTGGTCATCGCCAA---GGGTTCTTGATTGTATTACAGCATGAA-GGCAACTGAGGAGGTTCATGGAGTGGTCCAGAAT---AACGTGCAAGACATAAAATAAATAGCACACTCAAGGACGGAGAAAAGTTTCGAAATTTTGGAAGCACAT-------CAGCTAGACACAGGATTCAGAGACTTATTTGATTTATAGAGCAAGTCAGAAAGTGGGGAATACATAAAAGAGAGCCTGATGATTCAACAAACAGGA-----GG-AAAAAAGCAGAATAGAGAGGCTTATTGTTCTTTGAAGGAATGGACAAGATATTACGAGGAGGTGGTGAGTTTGTTTGGGAATGTGTTGAGCTGGCCGTATTCTTCCGTAGGAT--CCTACCCGGCGATGAA--ACAGTGAACTCAGCCCA-GGCTCTCAACTGAACATGTGGAGGTGGGAGGCGGTAGAAAGCAGCGAGAAAGA-GTGAGTACAATGAGAACTCAAATCGTCCTTTGACATAT
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            178703 633 -    375362 aaaGCTTGAAATGGAACACAAAATATTGGAAGCTTGCATTAGAAAACTGACCAGCTTTTCCCTGAACGAAACACTTTTGCTACTGCTGTTTGCT------CCACAAGAATGG-TAAGAGCAAACCTTTGATGAGAGAATCCCAGGTGAA-AATAAAAACCACATGTGATTTGTTATTCATTGCCAA---GGGTTCTTGATTGTATTACAGCATGAAGGGCAACTAAGGAGGTTCATGGAGTGGTCCAGAAT---AATGTGTAAGACATGAAATAAATAGCACATTCAAGGATGGAGAAAAGTTTTGAAATTTTGGAAGCACAT-------TAGCTAGACACAAGATTCAGAGACTTATTGGATTCGTAAAGCAAGCCAGAAAGTGGGGAATACATAAAAGAGAGCCTGATTATTCAACA-----GA-----GG-AAAAAAGCAGAATAGAGAGGCTTATTGTTCTTTGAAGGAATGGACAAGATATCATGAGGAGGAGGTGAGTTTGTTTGGGAATGTGTTGAACTTGCCATATTCTTCTGTAGGAT--CCTACCCGGTGATGAA--ACGGTGAGCTCAGCCCAGGGCTCTCAACTGGATATGTGGAGGTGGGAGTGAATGGAAAGCAGCAAGAGAGA-GTAAGTACAAGGGGAACTCAAATCGTCCTTT-------
i saiBol1.JH378348         I 315 C 0
s cebCap1.NW_016108108v1      169808 644 -    373274 AAAGCTTGAAATGGAACACAAAATACTGGAAACTTGCATTAGAAAACTGACCAGCTTTTCCCTGAACAAAACACTTTTGCTACTGCTGTTTGCT------CCACAGGAATGGTTAAGAACAAAACTTTGATGACAGAATCCCAGGTGAA-AATAAAAACCACACGTGATTTATTATTCATTGCCAA---GGGTTCTTGATTGTATTACAGCATGAA-GGCAACTAAGGAGGTTCATGGAGTGGTCCAGAAT---AATGTGCAAGACATGAAATAAATAGCACATTCAAGGATGGAGAAAAGTTTTGAAATTTTGGAAGCACGT-------TAGCTAGACACAGGATTCAGAGACTTATTGGATTTATAGAGCAAGTCAGAAAGTGGGGAATACATAAAAGAGAGCCTGATTATTCAACAAACAGGA-----GGAAAAAAAGCAGAAT--AGAGGCTTATTGTTCTTTGAAGGAATGGACAAGATATTATGAGGAGGAGGTGAATTTGTTTGGGAATGTGTTGAACTTGCCATATTCTTCCATAGGAT--CCTACCCAGTGATGAA--ACAGTGAACTCAGCCCAGGACTCTCAACTGTATATGTGGAGGTGGGAGTGAGCAGAAAGCAGCAAGAGAGA-GTGAGCACAAGGAGAACTCAAATCGTCCTTTGAGATAT
i cebCap1.NW_016108108v1   C 0 I 1
s aotNan1.NW_018494050v1      115183 623 -    285216 AAAGCTTGAAATGGAACACAAAATACTGGAAACTTGCATTAGAAAACTGACCAGCTTTTCCCTGAATAAAACGCTTTTGCTACTGCTGTTTGCT------CCACAGGAATGG-TAAGAGCAAAACTTTGATGAGAGAATCCCAGGTGAA-AATAAAAACCACATGTGATTTGTTATTCATCGCCAA---GGGTTCTTGATTGTATTACAGCACGAA-GGCGACTAAGGAGGTTCATGGAGCGGTCCAGAAT---AATGTGCAAGACACGAAATAAATAGCACATTCAAGGATGGAGAAAAGTTCTGAAATTTTGAAAGCACGT-------TAGCTAGACACAGGATTCAGAGACTTAATAGATTTATAGAGCAAGTCAGAAAGTGGGGAATACATAAAAGAGAACCTGATTATTCAACAAACAGGA-----GG-GAAAAAGCAGAATAGAGAGGCTTATTGTTCTTTGAAGGAATGGACAAGATATTATGAGGAGGAGGTGAGTCTGTTTGGGAATGTGTTGAACTTGCCACATTCTTCCGCAGGAT--CCTACCCGGTGATGAG--ACAGTGAACTCAGCCCAGGGCTCTCAGCTGAATATGTGGAGGTGGGAGTGAGT----------------------AGTACAATGAGAACTCAAATCGTCCTTTGAGATAT
i aotNan1.NW_018494050v1   C 0 I 713
s canFam3.chr35             25856222 599 +  26524999 GAAACCGTACGGGGAATACAAGGTACTGGAAGCATCTGTCGGGAAGCCGAGCAA-------TGGGATAAACCCTTGTTG--------GTTTACTGGGGCACCACGGGGAGGG-TCAGGGCAGGACTTTGG-GGGGAAACCCGCGGTGAGCCATCCAG-CCGCAGGCAA-TTGATGGGCGCGTCTAGCGGAGGCTCCTG-TGCTCCTGCAGCCCGAA-GG-GCGTGGGAAGGCTGGAGGGATCGCCCAGGTCCCGGAGGGTTACGGCGCGAATTGGA---CAGACTC-GGGATGGAAAGAA--CGTGGGGCTTTTTCAGCAAGTTCGTGGGTGTCCAGACACTGCATGGAAAGACCCACCCGCTTCACAGAGCGAGGCA--------------CGCGAGAGAGAACA--GCCGTTCGACAGACGGGGTCCGTGGGACAGATGTGTTGTCATGAG-----------TGCAGGGGGGCGCAGGGGGCATGGAGGGGAAGAGGTGGG-----TGGGGGGCAGGTCGGATTCAGCGGGC---------GGGTCGCCGGCGTGTGGACGTG--GCACCGGGCCCCGCCCTGTGCTCAGTCCTGAATACTTGGGGGTGGGTGTGTACAGAGGACACAAGTGTCCTAGTGAGTA------GAACTGAAAGTGTCCTAGAAGATT-
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1488286 3828 -   2232465 I

a score=-2634.000000
s hg38.chr6_GL000254v2_alt     99618 2 +   4827813 GA
s panTro5.chr6              29079738 2 + 175400573 GA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29314181 2 + 173848474 GA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5114331 2 +   6154872 GA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74119333 1 + 122973662 G-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29296804 2 + 172585720 GA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28946640 2 - 170955103 GA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1928714 2 -   2996164 GA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1806125 2 -   2157725 GA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28250595 2 -  71996105 GA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1932428 2 +   2316924 GA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1805193 2 -   3067355 GA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171345939 1 - 171630274 G-
i calJac3.chr4             I 1 C 0
s saiBol1.JH378348            179336 1 -    375362 G-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      170453 1 -    373274 G-
i cebCap1.NW_016108108v1   I 1 C 0
s canFam3.chr35             25856821 2 +  26524999 GA
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      115806 713 -    285216 I

a score=1157729.000000
s hg38.chr6_GL000254v2_alt     99620 112 +   4827813 AGATCAGAAACTTACTTACTGATAGTTGTGAAAAGC-A-AAAAAATGAA------CTTCTTCCTAGC-TGATCTTCAAC---CCTGGAATTC--ACACTGGTTGTCACCATGGCCTTGAAACTTTC
s panTro5.chr6              29079740 112 + 175400573 AGATCAGAAACTTACTTACTGATAGTTGTGAAAAGC-A-AAAAAATGAA------CTTCTTCCTAGC-TGATCTTCAAC---CCTGGAATTC--ACACTGGTTGTCACCATGGCCTTGAAACTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29314183 112 + 173848474 AGATCAGAAACTTACTTACTGATAGTTGTGAAAAGC-A-AAAAAATGAA------CTTCTTCCTAGC-TGATCTTCAAC---CCTGGAATTC--ACACTGGTTGTCACCATGGCCTTGAAACTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5114333 112 +   6154872 AGATCAGAAACTTACTTACTGATAGTTGTGAAAAGT-A-AAAAAATGAA------CTTCTTCCTAGC-TGATCTTCAAC---CCTGGAATTC--ACACTGGTTGTCACCATGGCCTTGAAACTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74119334 112 + 122973662 AGATCAGGAACTTATTTACTGACAGTTGTGCAAAGT-G-AAAAAATGAA------ATTCTTCCTAGA-TTATTTTCAAC---CCTGGAATTC--ACACTGGTTATCACCATGGCCTTGAAACtttc
i nomLeu3.chr1a            C 0 I 399
s rheMac8.chr4              29296806 113 + 172585720 AGATCAGGAACTTATTTACTGATAGTTGTGAAAAGC-ACAAAAAATGAA------CTTCTTCCTAGA-TAATCTTCAAC---CCTGGAATTC--ACACTGGTTATCGCCATGGACTTGAAACTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28946642 112 - 170955103 AGATCAGGAACTTATTTACTGATAGTTGTGAAAAGC-A-AAAAAATGAA------CTTCTTCCTAGA-TAATCTTCAAC---CCTGGAATTC--ACACTGGTTATCGCCATGGACTTGAAACTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1928716 112 -   2996164 AGATCAGGAACTTATTTACTGATAGTTGTGAAAAGC-A-AAAAAATGAA------CTTCTTCCTAGA-TAATCTTCAAC---CCTGGAATTC--ACACTGGTTATCGCCATGGACTTGAAACTTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1806127 112 -   2157725 AGATCAGGAACTTATTTACTGATAGTTGTGAAAAGC-A-AAAAAATGAA------CTTCTTCTTAGA-TAATCTTCAAC---CCTGGAATTC--ACACTGGTTATCGCCATGGACTTGAAACTTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28250597 112 -  71996105 AGATCAGGAACTTATTTACTGATAGTTGTGAAAAGC-A-AAAAAATGAA------CTTCTTCCTAGA-TAATCTTCAAC---CCTGGAATTC--ACACTGGTTATCGCCATGGACTTGAAACTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1932430 112 +   2316924 AGATCAGGAACTTATTTACTGATAGTTGTGAAAAGC-A-AAAAAATGAA------CTTCTTCCTAGA-TAATCTTCAAC---CCTGGAATTC--ACACTGGTTATCGCCATGGACTTGAAATTTTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1805195 112 -   3067355 AGATCAAGAACTTATTTACTGATAATTGTGAAAAGC-A-AAAAAATGAA------CTTCTTCCTAGA-TGATCTTCAAC---CCTGGAATTC--ACACTGGTTATCGCCATGGCCTTGAAACTTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171345940 112 - 171630274 AGATCGGGAACTTATTTACTGAGAGTTGTGAAAAGC-A-AAAAAATGAA------CTTCTTTTTAGACTGATCCTCAAC---CCTGGAATTC--ACACTGGTTATCGCCACGGCCTTGAAA-TTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            179337 114 -    375362 AGATCAGGAACTTATTTACTAAGAGTTGTGAAGAGCAA-AAAAAATGAA------CTTCTTTTTAGACTGATCTTCAAT---CCTGGAATTC--ACACTGGTTATCACCATGGCCTTGAAACTTCC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      170454 113 -    373274 AGATCAGGAACTTATTTACTGAGAGTTGTGAAAAGC-A-AAAAAATGAA------CTTCTTTTTAGACTGATCTTCAGT---CCTGGAATTC--ACACTTGTTATCACCATGGCCTTGAAACTTCC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      116519 113 -    285216 AGATCAGGAACTTATTTACTGAGAGTTGTGAAAAGC-A-AAAAAATGAA------CTTGTTTTTAGACTGATCTTCAAT---CCTGGAATTC--ACACTGGTTATCACCATGGCCTTGAAACTTCC
i aotNan1.NW_018494050v1   I 713 C 0
s canFam3.chr35             25856823 124 +  26524999 GAGTCAGGAACTCATTTGTTGATGGTTGTGAAAACT-T-AAAAAAAAAAAAAAGGCTTCTTTCCAaactgttcttgaactgttcttgaacGCTAACACTGGTTAGCACCACAGCCCAGAAACTTCC
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1488286 3828 -   2232465 I

a score=2264576.000000
s hg38.chr6_GL000254v2_alt     99732 283 +   4827813 ACAAAAGACCCA-----------GAAAGTCTCATTTCCTG--GCTAGTTTCCCAGTAGGTGTTATCT-TttctcattcatcttcattctcattctccttATGTATGACTTTACCTATATTGGTAAGCATATTGCTGAGCCCCTTTCGAGGTTGGG-AACACCTTAT-GGTTTGGCAGAATT--TCTCTCTGTTGGCTCATAGGGATAGCGGAATAGGTAAGAGGAAACAT-AATGGCAGGTTTCACTGAAATTGGGTATTTAA---GTGTCACCCACAAAACTCTACAAGCTCTGGTGTGTG----TGT
s panTro5.chr6              29079852 282 + 175400573 ACAAAAGACCCA-----------GAAAGTCTCATTTCCTG--GCTAGTTTCCCAGTAGGTGTTATCT-TTTCTCGTTCATCTTCATTCTCATTCTCCTTATGTATGACTTTACCTATATTGGTAAGCATATTGCTGAGCCCCTTTCGAGGTTGGG-AACACCTTAT-GGTTTGGCAGAATT--TCTCTCTGTTGGCTCATAGGGATAGCGGAATAGGTAAGAGGAAACAT-AATGGCAGGTTTCACTGAAATTGGGTATTTAA---GTGTCACCCGCAAAACTCTACAAGCTCTGGTGTGTG----TG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29314295 282 + 173848474 ACAAAAGACCCA-----------GAAAGTCTCATTTCCTG--GCTAGTTTCCCAGTAGGTGTTATCT-TTTCTCGTTCATCTTCATTCTCATTCTCCTTATGTATGACTTTACCTATATTGGTAAGCATATTGCTGAGCCCCTTTCGAGGTTGGG-AACACCTTAT-GGTTTGGCAGAATT--TCTCTCTGTTGGCTCATAGGGATAGCGGAATAGGTAAGAGGAAACAT-AATGGCAGGTTTCACTGAAATTGGGTATTTAA---GTGTCACCCGCAAAACTCTACAAGCTCTGGTGTGTG----TG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5114445 284 +   6154872 ACAAAAGACCCA-----------GAAAGTCTCATTTCCTG--GCTAGTTTCCCAGTAGGTGTTATCT-TttctcattcgtcttcattctcattctccttATGTATGACTTTACCTATACTGGTAAGCATATTGCTGAGCCCCTTTCCAGGTTGGGAAACACCTTAT-GGTTTGGCAGAATT--TCTCTCTGTTGGCTCATAGGGATAGTGGAATAGGTAAGAGAAAACAT-AATGGCAGGTTTCACTGAAATTGGGTATTTAA---GTGTCACCCACAAAACTCTACAAGCTCTGGTGTGTG----TGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29296919 270 + 172585720 ACAAAAGACCCA-----------GAAAGTCTCATTTCCT---GCCAGTTTCCCAGTAGGTATTATCT-TTTCTCATTCATCTTCATTGTCATCCTCCATGTATATGACTTTACCTATATTGGTAAGTATATCACTGAGCCCCTTTCGAAGTTGAG-ACCACCTTAT-GGTTTGGCAGAATT--TCTCTCAGT----------------TGGAATAGGTAAGAGGAAACATAAATGGCAGATTTCACTGAAATTGGGTATTAGAGATGTGTCACCCAAAAAACTCTACAAGCTTTGGGgtgtg----tgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28946754 270 - 170955103 ACAAAAGACCCA-----------GAAAGTCTCATTTCCT---GCCAGTTTCCCAGTAGGTATTATCT-TTTCTCATTCATCTTCATTGTCATCCTCCATGTATATGACTTTACCTATATTGGTAAGTATATCACTGAGCCCCTTTCGAAGTTGAG-ACCACCTTAT-GGTTTGGCAGAATT--TCTCTCAGT----------------TGGAATAGGTAAGAGGAAACATAAATGGCAGATTTCACTGAAATTGGGTATTAGAGATGTGTCACCCAAAAAACTCTACAAGCTTTGGGgtgtg----tgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1928828 270 -   2996164 ACAAAAGACCCA-----------GAAAGTCTCATTTCCT---GCCAGTTTCCCAGTAGGTATTATCT-TTTCTCATTCATCTTCATTGTCATCCTCCATGTATATGACTTTACCTATATTGGTAAGTATATCACTGAGCCCCTTTCGAAGTTGAG-ACCACCTTAT-GGTTTGGCAGAATT--TCTCTCAGT----------------TGGAATAGGTAAGAGGAAACATAAATGGCAGGTTTCACTGAAATTGGGTATTAGAGATGTGTCACCCAAAAAACTCTACAAGCTTTGGGgtgtg----tgt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1806239 286 -   2157725 ACAAAAGACCCA-----------GAAAGTCTGATTTCCT---GCCAGTTTCCCAGTAGGTATTATCT-TTTCTCATTTATCTTCATTGTCATCCTCCATGTATATGACTTTACCTATATTGGTAAGTATATCACTGAGCCCCTTTCGAAGTTGAG-ACCACCTTAT-GGTTTGGCAGAATT--TTTCTCAGTTGGCTCATGGGGATAGTGGAATAGGTAAGAGGAAACATAAATGGCAGGTTTCACTGAAATTGGGTATTAGAGATGTGTCACCCAAAAAACTCTACAAACTTTGGGgtgtg----tgt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28250709 286 -  71996105 ACAAAAGACCCA-----------GAAAGTCTCATTTCCT---GCCAGTTTCCCAGTAGGTATTATCT-TTTCTCATTCATCTTCATTCTCATCCTCCATGTGTATGACTTTACCTATATTGGTAAGTATATCACTGATCCCCTTTCGAAGTTGAG-ACCACCTTAT-GGTTTGGCAGAATT--TCTCTCAGTTGGCTCATGGGGATAGTGGAATAGGTAAGAGGAAACATAAATGGCAGGTTTCACTGAAATTGGGTATTAGAGATGTGTCACCCAAAAAACTCTACAAGCTCTGGGgtgtg----tgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1932542 286 +   2316924 ACAAAAGACCCA-----------GAAAGTCTCATTTCCT---GCCAGTTTCCCAGTAGGTATTATCT-TTTCTCATTCATCTTCATTGTCATCCTCCATGTGTATGACTTTACCTATATTGGTAAGTATATCACTGAGCCCCTTTCGAAGTTGAG-ACCACCTTAT-GGTTTGGCAGAATT--TTTCTCAGTTGGCTCATGGGGATAGTGGAATAGGTAAGAGGAAACATAAATGGCAGGTTTCACTGAAATTGGGTATTAGAGATGTGTCACCCAAAAAACTCTACAAGCTTTGGGgtgtg----tgt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1805307 286 -   3067355 ACAAAAGACCCA-----------GAAAGTCTCATTTCCT---GCCAATTTCCCAGTAGGTATTATAT-TTTCTCATTCATCTTCATTCTCATCCTCCATGTGTATGACTTTACCTATATTGGTAAGTATATCACTGAGCCCCTTTCGAAGTTGAG-AACACCTTAT-GGTTTGGCAGAATT--TCTCTCAGTTGGCTCATGGGGATAGTGGAATAGGTAAGAGGAAACATAAATGGCAGGTTTCACTGAAATTGGGTATTAGAGATGTGTCACTCAAAAAACTCTACAAGCTCtgtggtgtg----tgt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171346052 289 - 171630274 ACAGAAGACCCA-------------AAGTCTCATTTCCTG--GCTAGTTTCCCAGTGGGTGTCATCTCTTCCTCATTCATCTTCATTCTCATCCTCCGTGTGTGTGCCTTTGCCTACACTGGTAAGTATATCACCGAACTGCTTACGAAGTTG-G-AACACCTTGT-GGTTTGGCAGAATT--TCTCTCTGTTGGCTCATGCGGATAGTGGAATAGGTAAGAGGAAACACACATGACAAGTTTCACTAAAACTGGGCATTAGAGAAGTGTCACCCACAAAACTCTACAAGCTCTGGCgtgtgagcatgt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            179451 286 -    375362 AGAGAAGACCCA-----------GGAAGTCTCATTTCCTG--GCTAGTTTCTGAGTAGGTGTTATCTCTCCCTCCTTCGTCTTTATTCTCATCCT-CATGTGTGTGCCTTTGACCATATTGGTAAGTATATCACTGAACCCCTTACGAAGTTG-T-AACACCTTAT-GGTTTGGCAGAATT--TCTCTCTGTTGGCTCATGCGGATAGTGGAATAGGTAAGAGGAAACACACATTACAGGTTTCACTGAAATTGGGTATTAGAGAAGTGTCACTCACAAAACTCTACAAGCTCTGGCgtgtg----tgt
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      170567 287 -    373274 AGAGAAGACCCA-----------GAAAGTCTCATTTCCTG--GGTAGTTTCTGAGTAGGTGTTATCTCTTCCTCATTCGTCTTTATTCTCATCCTCCGTGTGTGTGCCTTTGCCTATATTGGTAACTATATCACTGAACTCCTTACGAAGTTG-C-AACACCTTAT-GGTTTGGCAGAATT--TCTCTCTGTTGGCTCATGCGGATAGTGGAATAGGTAAGAGGAAACACACATTACAAGTTTCACTGAAATTGGGTATTAGAGAAGTGTCACCCACAAAACTCTACAAGCTCTGGCgtgtg----tgc
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      116632 271 -    285216 AGAGAAGACCCA-----------GAAAGTCTCATTTCCTG--GCCAGTTTCCCAGTGGGTGTTGTCTCCTCCTCATTCATCTTCATTCTCATGCT--------------TTGCCTACATTGGTAAGTAGATCACTGAACCCCTTACGAAGTTG-G-AACACCTTAC-GGTTTGGCAGAAAT--TCTCTCTGTTGGCTCATGCGGCTAGTGGAATAGGTAAGAGGAAACACACG--ACAAGTTTCACTGAAATTGGGTATTAGAGAAGTGTCACCCACAAAACTCTACAGGCTCTGGCAtgtg----tgt
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25856947 267 +  26524999 ATGGAAGACCTCCACCCCTACTCCAAAGACTCATTTCCTGGTACCAGGCTCCTAGCAAGTGTCCTCT-CTTCT--TTCATCTT--------------------ATGTCTTTG-CTATATT----AGTATATCATTGAGTCTCTT--GAAATTGAA-AGGACCTGATGGGGTTGGTGGAATTGCTCTCTTGGTGTGCTCCTGGGGCTGGTAGAATAG----GAGGAAAGGGAACTGGCAGATTCCACTGGAATTAAGTGCTAGAGAAGTGGCACCTGCAGAA-TCTGCAAGC--TGGCGTAAG----TGT
i canFam3.chr35            C 0 I 13
e otoGar3.GL873742           1488286 3828 -   2232465 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=6867.000000
s hg38.chr6_GL000254v2_alt    100015  7 +   4827813 GTTT--------GTG
s panTro5.chr6              29080134  4 + 175400573 ---T--------gcg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29314577  4 + 173848474 ---T--------gcg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5114729  7 +   6154872 GTGT--------gcg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29297189  7 + 172585720 gtgt--------gtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28947024  7 - 170955103 gtgt--------gtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1929098 11 -   2996164 gtgt----gtgcgtg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1806525 15 -   2157725 gtgtgtgtgtgtgcg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28250995  7 -  71996105 gtgtgtg--------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1932828 15 +   2316924 gtgtgtgtgtgtgcg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1805593  4 -   3067355 gtgt-----------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171346341  7 - 171630274 gtgt--------atg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            179737  7 -    375362 gtgt--------gtg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      170854  7 -    373274 gtgt--------gtg
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      116903  7 -    285216 gtgt--------gtg
i aotNan1.NW_018494050v1   C 0 I 64
e canFam3.chr35             25857214 13 +  26524999 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=82594.000000
s hg38.chr6_GL000254v2_alt    100022 16 +   4827813 CGCGCGCGCGCGCGTG
s panTro5.chr6              29080138 16 + 175400573 cgcgcgcgcgcgcgTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29314581 16 + 173848474 cgcgcgcgcgcgcgTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5114736 16 +   6154872 cgcgcgcgcgcgcgTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29297196 16 + 172585720 cgtgtgtgtgtACGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28947031 16 - 170955103 cgtgtgtgtgtACGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1929109 16 -   2996164 cgtgtgtgtgtACGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1806540 16 -   2157725 cgtgtgtgtgtACGTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28251002 14 -  71996105 --tgtgGGGGTACGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1932843 16 +   2316924 catgtgtgtgtACGTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1805597 11 -   3067355 -----gtgtgtACGTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171346348 16 - 171630274 tgtgtgtgtgtatgtg
i calJac3.chr4             C 0 I 127
s saiBol1.JH378348            179744 16 -    375362 tgtgtgtgtgtgtgtg
i saiBol1.JH378348         C 0 I 5
s cebCap1.NW_016108108v1      170861 16 -    373274 tgtgtgtgtgtgtgtg
i cebCap1.NW_016108108v1   C 0 I 3
e canFam3.chr35             25857214 13 +  26524999 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      116910 64 -    285216 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=165380.000000
s hg38.chr6_GL000254v2_alt    100038 21 +   4827813 AAAGTGCTGGGAGGATGTGAG
s panTro5.chr6              29080154 21 + 175400573 AAAGTGCTGGGAGGATGTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29314597 21 + 173848474 AAAGTGCTGGGAGGATGTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5114752 21 +   6154872 AAAGTACTGGGAGGATGTGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29297212 21 + 172585720 AAAGTGCTGGGACGATGTGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28947047 21 - 170955103 AAAGTGCTGGGACGATGTGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1929125 21 -   2996164 AAAGTGCTGGGACGATGTGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1806556 21 -   2157725 AAAGTGCTGGGACGATGTGAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28251016 21 -  71996105 AAAGTGCTGGGAGGATGTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1932859 21 +   2316924 AAAGTGCTGGGACGATGTGAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1805608 21 -   3067355 AAAGTGCTAGGAGGATGTGAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171346491 21 - 171630274 gAAGTGCTGGGAGGATGTGAG
i calJac3.chr4             I 127 C 0
s saiBol1.JH378348            179765 21 -    375362 gAAGTGCTGGGAGGATGTGAG
i saiBol1.JH378348         I 5 C 0
s cebCap1.NW_016108108v1      170880 21 -    373274 gAAGTGCTGGGAGGATGTGAG
i cebCap1.NW_016108108v1   I 3 C 0
e canFam3.chr35             25857214 13 +  26524999 I
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      116910 64 -    285216 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=165243.000000
s hg38.chr6_GL000254v2_alt    100059 341 +   4827813 AAAAATTATCTAGGCTGTTTTggccgggcgcggtggctcatggctgtaatcccaacactttgggaggccgaggcgggcggatcacgaggtcaggagaccgagaccatcctggctaacacggtgaaaccccgtctctactt--aaaa-aaaaaaacaaa-aaacaaaaaattagccaggtgtagtggagggcgcctgtagtgccagctactcgggaggctgaggcaggagaatggcgtgaacccaggaggcggtgcttgcagtgagccgagatcgcgctactgcactccagcctgggcgacagagcaagactctgtctcaaaaaaaa------------------------------aaaaaaaaaaagaaagaaa
s panTro5.chr6              29080175 373 + 175400573 GAAAATTATCTAGGCTGTTTTggccgggcgcggtggctcatggctgtaatcccaacactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctacttaaaaaa-aaaaaaacaaa-aaacaaaaaattagccaggtgtagtggagggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggaggcggtgcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcaagactctgtctcaaaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29314618 324 + 173848474 GAAAATTATCTAGGCTGTTTTggccgggcgcggtggctcatggctgtaatcccaacactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactt--------aaaaaacaaa-aa--caaaaattagccaggtgtagtggagggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggaggcggtgcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcaagactctgtctacaaaaaaa----------------------------------------agaaagaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5114773 332 +   6154872 GAAAATTATCTAGGCTGTTTTggcccggcgcggtggctcatggctgtaatcccaacactttgggaggccgagtcgggcggatcacgaggtcaggagatcgagaccatcctggctaatacggtgaaaccccgtctctacttaaaaaacaaacaaacaaacaaacaaaaaattagccaggtgtagtggagggcgcctgtagtcccagctactcgggaggctgaggca-gagaatggcgtgaacccaggaggcggtgcttgcagtgagccgagat--cggcactgcactccagcctgggcgacagagcaagactctgtctcaaaaaaaa----------------------------------------aaaaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
e canFam3.chr35             25857214  13 +  26524999 I
e saiBol1.JH378348            179786   0 -    375362 C
e otoGar3.GL873742           1488286 3828 -   2232465 I
e aotNan1.NW_018494050v1      116910  64 -    285216 I
e cebCap1.NW_016108108v1      170901   0 -    373274 C
e calJac3.chr4             171346512   0 - 171630274 C
e colAng1.NW_012115566v1     1805629   0 -   3067355 C
e manLeu1.NW_012104165v1     1932880   0 +   2316924 C
e chlSab2.chr17             28251037   0 -  71996105 C
e cerAty1.NW_012001495v1     1806577   0 -   2157725 C
e macNem1.NW_012011356v1     1929146   0 -   2996164 C
e macFas5.chr4              28947068   0 - 170955103 C
e rheMac8.chr4              29297233   0 + 172585720 C
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=6427.000000
s hg38.chr6_GL000254v2_alt    100400 12 +   4827813 gaaagaaagaaa-
s panTro5.chr6              29080548 12 + 175400573 gaaagaaagaaa-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29314942 12 + 173848474 gaaagaaagaaa-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5115105 12 +   6154872 gaaagaaagaaG-
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742           1492114 13 -   2232465 GGGAGAATGAGGA
i otoGar3.GL873742         I 3828 C 0
e canFam3.chr35             25857214 13 +  26524999 I
e saiBol1.JH378348            179786  0 -    375362 C
e aotNan1.NW_018494050v1      116910 64 -    285216 I
e cebCap1.NW_016108108v1      170901  0 -    373274 C
e calJac3.chr4             171346512  0 - 171630274 C
e colAng1.NW_012115566v1     1805629  0 -   3067355 C
e manLeu1.NW_012104165v1     1932880  0 +   2316924 C
e chlSab2.chr17             28251037  0 -  71996105 C
e cerAty1.NW_012001495v1     1806577  0 -   2157725 C
e macNem1.NW_012011356v1     1929146  0 -   2996164 C
e macFas5.chr4              28947068  0 - 170955103 C
e rheMac8.chr4              29297233  0 + 172585720 C
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=123735.000000
s hg38.chr6_GL000254v2_alt    100412 12 +   4827813 gaaaATTATCTA
s panTro5.chr6              29080560 12 + 175400573 gaaaATTATCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29314954 12 + 173848474 gaaaATTATCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5115117 12 +   6154872 GAAAATTATCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29297233 12 + 172585720 GAAAATTATCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28947068 12 - 170955103 GAAAATTATCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1929146 12 -   2996164 GAAAATTATCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1806577 12 -   2157725 GAAAATTATCTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28251037 12 -  71996105 GAAAATTATCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1932880 12 +   2316924 GAAAATTATCTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1805629 12 -   3067355 GAAAATTATCTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171346512 12 - 171630274 GAAAACTATCTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            179786 12 -    375362 GAAAAGTATCTA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      170901 12 -    373274 GAAAAGTATCTA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      116974 12 -    285216 GAAAAGTATCTA
i aotNan1.NW_018494050v1   I 64 C 0
s otoGar3.GL873742           1492127 12 -   2232465 GAAAATTATCTA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25857214 13 +  26524999 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=1039523.000000
s hg38.chr6_GL000254v2_alt    100424 115 +   4827813 GACTGTTTGATGGTGTGAAAGT-----------TGTTTCCAGAGTCATCATGTAATTATTCTCTAA---------CTT-GCACCTGAAGAAACCAAGATACCAGTTAGATTACC-AGAAGTTCCCCACAAGGAGGTG----------
s panTro5.chr6              29080572 115 + 175400573 GACTGTTTGATGGTGTGAAAGT-----------TGTTTCCAGAGTCATCATGTAATTATTCTCTAA---------CTT-GCACCTGAAGAAACCAAGATACCAGTTAGATTACC-AGAAGTTCCCCACAAGGAGGTG----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29314966 115 + 173848474 GACTGTTTGATGGTGTGAAAGT-----------TGTTTCCAGAGTCATCATGTAATTATTCTCTAA---------CTT-GCACCTGAAGAAACCAAGATACCAGTTAGATTACC-AGAAGTTCCCCACAAGGAGGTG----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5115129 115 +   6154872 GACTGTTTGATGGTGTGAAAGT-----------TGTTTCCAGAGTCATCATGTAATTATTCTCTAA---------CTT-GCACCTGAAGAAACCAAGATACCAGTTAAATTACC-AGAAGTTCCCCACAAGGAGGTG----------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29297245 112 + 172585720 GGCTGTTTGATGATGTGAAA--------------GTTTCCAGAGTCATCATGTGATTTTTCTCTGA---------CTT-GCACCTGAAGAAACCAAGATACCAGTTAGATTACC-TGAAGTTCCTCACAAGGAGGTG----------
i rheMac8.chr4             C 0 I 27
s macFas5.chr4              28947080 112 - 170955103 GGCTGTTTGATGATGTGAAA--------------GTTTCCAGAGTCATCATGTGATTTTTCTCTGA---------CTT-GCACCTGAAGAAACCAAGATACCAGTTAGATTACC-TGAAGTTCCTCACAAGGAGGTG----------
i macFas5.chr4             C 0 I 27
s macNem1.NW_012011356v1     1929158 112 -   2996164 GGCTGTTTGATGATGTGAAA--------------GTTTCCAGAGTCATCATGTGATTTTTCTCTGA---------CTT-GCACCTGAAGAAACCAAGATACCAGTTAGATTACC-CGAAGTTCCTCACAAGGAGGTG----------
i macNem1.NW_012011356v1   C 0 I 55
s cerAty1.NW_012001495v1     1806589 112 -   2157725 GGCTGTTTGATGATGTGAAA--------------GTTTCCAGAGTCATCATGTGATTTTTCTCTGA---------CTT-GCACCTGAAGAAACCAAGATACCAGTTAGATTACC-CGAAGTTCCTCACAAGGAGGTG----------
i cerAty1.NW_012001495v1   C 0 I 27
s chlSab2.chr17             28251049 112 -  71996105 GGCTGTTTGATGATGTGAAA--------------GTTTCCAGGGTCATCATGTGATTATTCTCTGA---------CTT-GCACCTGAAGAAACCAAGATACCAGTTAGATTACC-CGAAGTTCCTCACAAGGAGGTG----------
i chlSab2.chr17            C 0 I 9651
s manLeu1.NW_012104165v1     1932892 112 +   2316924 GGCTGTTTGATGATGTGAAA--------------GTTTCCAGAGTCATCATGTGATTTTTCTCTGA---------CTT-GCACCTGAAGAAACCAAGATACCAGTTAGATTACC-CGAAGTTCCTCACAAGGAGGTG----------
i manLeu1.NW_012104165v1   C 0 I 26
s colAng1.NW_012115566v1     1805641 113 -   3067355 GGCTGTTTGATGATGTGAAA--------------GTTTCCAGAGTCATCATGTGATTATTCTCTGA---------CTTGGCACCTGAAGAAACCAAGATACTAATTAGATTACC-CGAAGTTCCTCACAAGGAGGTG----------
i colAng1.NW_012115566v1   C 0 I 5
s calJac3.chr4             171346524 112 - 171630274 GGCTGTTCGATGGTGTGAAA--------------GTTTCCAGAGTCATCATGTGATTATTCTCTAA---------CTT-GTACCTGAAGAAACCAAAATATCAGTTACGTTACC-AGAACTTCCTCACAAGGAGGCG----------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            179798 112 -    375362 GGCTGTTCGATTGTGTGAAA--------------GTTTCCAGAGTCATCATGTGGTTAATCTCTAA---------CTT-GTACCTGAAGAAACCAAAACACCAGTTACATTACC-AGAATTTCCTCACAAGGAGGCG----------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      170913 109 -    373274 GGCTGTTCGATTGTGTGAAA--------------GTTTCCAGAG---TCATGTGATTAATCTTTAA---------CTT-GTACCTGAGGAAACCAAAATACCAGTTACATTACC-AGAACTTCCTCACAAGGAGGCA----------
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      116986 112 -    285216 GGCTGTTTGATGGTGTGAAA--------------GTTTCCAGAGTCATCATGCGATTATTCTCTGA---------CTT-GTACCTGAAGAAACCAAAATACCAGTTACATTACC-AGAACTTTCTCACAAGGAGGCG----------
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1492139 115 -   2232465 GGCTGTTTGATGGTGTAAAAGTACAATTACAAAAGTTTCCAGA-----------ATTATCCTCTAA---------ATC-ACACCTGGAGAAACCTACATACCAGTTAGATTACCAAAAAGCTCCTTACAAAGAAGT-----------
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25857227 130 +  26524999 GGCTGTTGGATGGTGTGAGAAA------------GTTT---GAACAATTGGGAAAGTTCCCTTTCAAGCTTTTACATT-GCTCCTAGAGAAAACTAAATGCCAGTTAGATTGCT-AGAAGTTCCTCACAAACAGGTTTGGGGttttg
i canFam3.chr35            I 13 C 0
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=794466.000000
s hg38.chr6_GL000254v2_alt    100539 103 +   4827813 tttct-------------tttttttt-------ttttttctgtttGCCCCAAAGTACAGAGAACACTGTGAGAATTGT---TTAAGTTTCTGTA--AGCATTCAG-----------------------AAATATCTATGCATGGGGAGACA
s panTro5.chr6              29080687 101 + 175400573 TTTC---------------TTTTTTT-------TTTTTTCTGTTTGCCCCAAAGTACAGAGAACACTGTGAGAATTGT---TTAAGTTTCTGTA--AGCATTCAG-----------------------AAATATCTATGCATGGGGAGACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29315081 103 + 173848474 tttct-------------tttttttt-------ttttttctgtttGCCCCAAAGTACAGAGAACACTGTGAGAATTGT---TTAAGTTTCTGTA--AGCATTCAG-----------------------AAATATCTATGCATGGGGAGACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5115244 102 +   6154872 tttc--------------tttttttt-------ttttttctgtttGCCCCAAAGTACAGAGAACACTGTGAGAATTGT---TTAAGTTTCTGTA--AGCATTCAG-----------------------AAATATCTATGCATGGGGAGACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29297384 112 + 172585720 ttctttttttt-------tttttttt-------tttGCTCTGTTTGCCCCAAGGTACAGAGAACACTGTGAGAATTGTTTATTAGGTTTCTGTA--AGCATTCAG-----------------------AAATATCTATGCATGGGGAGACA
i rheMac8.chr4             I 27 C 0
s macFas5.chr4              28947219 112 - 170955103 ttctttctttc-------tttTTTTT-------TTTGCTCTGTTTGCCCCAAGGTACAGAGAACACTGTGAGAATTGTTTATTAAGTTTCTGTA--AGCATTCAG-----------------------AAATATCTATGCATGGGGAGACA
i macFas5.chr4             I 27 C 0
s macNem1.NW_012011356v1     1929325 114 -   2996164 ttctttctttc-----tttttttttt-------tttgctctgtttGCCCCAAGGTACAGAGAACACTGTGAGAATTGTTTATTAAGTTTCTGTA--AGCATTCAG-----------------------AAATATCTATGCATGGGGAGACA
i macNem1.NW_012011356v1   I 55 C 0
s cerAty1.NW_012001495v1     1806728 106 -   2157725 ttttt-------------tttttttt-------ttCGCTCTGTTTGTCCCAAGGTACAGAGAACACTGTGAGAATTGTTTATTAAGTTTCTGTA--AGCATTCAG-----------------------AAATATCTATGCATGGGGAGACA
i cerAty1.NW_012001495v1   I 27 C 0
s chlSab2.chr17             28260812 106 -  71996105 ttttt-------------tttttttt-------tttGCTCTGTTTGCCCCAAGGTACAGAGAACACTGTGAGAATTATTTATTAAGTTTCTGTA--AGCATTCAG-----------------------AAATATCTGTGCATGGGGAGACA
i chlSab2.chr17            I 9651 C 0
s manLeu1.NW_012104165v1     1933030 106 +   2316924 ttttt-------------tttttttt-------ttCGCTCTGTTTGTCCCAAGGTACAGAGAACACTGTGAGAATTGTTTATTAAGTTTCTGTA--AGCATTCAG-----------------------AAATATCTATGCATGGGGAGACA
i manLeu1.NW_012104165v1   I 26 C 0
s colAng1.NW_012115566v1     1805759 119 -   3067355 ttttttctttctgggttttttttttt-------ttttCTCTGATTGCCCCAAGGTACAAAGAACACTGTGAGAATTGTTTATTAAGTTTCTGTA--AGCATTCAG-----------------------AAATATCTATGCATGGGGAGACA
i colAng1.NW_012115566v1   I 5 C 0
s calJac3.chr4             171346636 108 - 171630274 -----------------CTTTTC-TTTCTTTCTTTTTTTCTGTTTGCTGCAAGGTACACAGAGCACTGTGACAATTGTTTGTTAAGTTTCTGTA--AGCATTGAG-----------------------AAATATCTATCTATGGGGAGACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            179910 107 -    375362 -----------------CTTTTCTTTTCTTTTATTTTTTCTGTTTGCTGCAAGGTACACAGAACAC--TGACAATTGTTTGTTAAGTTTCTGTA--AGCATTCAG-----------------------AAATATCTATCTATCGGGAGACA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      171022 103 -    373274 -----------------cttttcttttct----ttttttctgtttgctGCAAGGTACACAGAACACTGTGACAATTGTTTGTT--GTTTCTGTA--AGCATTCAG-----------------------AAATATCTATCTATGAGGAGACA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      117098  93 -    285216 -----------------CTTTTGCTT-------TTTTTTCTGTTTGCTGC------CCCGGAACACTGCGACAATTGT---TTAAGTTTCTGTA--ACCATTCAG-----------------------AAATATCTATCTATAGGGAGACA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1492254 117 -   2232465 -----------------------TTT-------GTTTTTCTGTTTTTCCAAAGATACACTAAACACTGT----ATTACTTATTAATTTTACATGACAACATTCAGACTCTCTGCTTACAACATTATTCAAATATCTCTCCATAGGAAAGTA
i otoGar3.GL873742         C 0 I 434
s canFam3.chr35             25857357 129 +  26524999 tttttgttt---------ttgttttt-------ttgtttctgtttACCCGAAGGTACAGCGAACACCGT---AATTGTTTATTAATTTTCTGTGACAACTTTCAGGCTCTCTGTCCATAGCATTATTGAAATACTT---CATAGGGAAATA
i canFam3.chr35            C 0 I 1
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=787210.000000
s hg38.chr6_GL000254v2_alt    100642  90 +   4827813 TAGGATGAGTTCCAAATATATGAGATTTTTCTGATGAACCAACCATTTATCTCAGGAGAT----------AGAACTCATTCATACTCAATTACTCTGCTC
s panTro5.chr6              29080788  90 + 175400573 TAGGATGAGTTCCAAATATATGAGATTTTTCTGATGAACCAACCATTTATCTCAGGAGAT----------AGAACTCATTCATACTCAATTACTCTGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29315184  90 + 173848474 TAGGATGAGTTCCAAATATATGAGATTTTTCTGATGAACCAACCATTTATCTCAGGAGAT----------AGAACTCATTCATACTCAATTACTCTGCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5115346  90 +   6154872 TAGGATGAGTTCCAAATATATGAGATTTTTCTGATGAACCAACCATTTATCTCAGGAGAT----------AGAACTCATTCATACTCAATTACTCTGCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29297496  90 + 172585720 TAGGATGAGTTCCAAATATATGAGATTTTTCTGATGAACCAACCACTTATCTCAGGAGAT----------AGAACTCATTCATACCTAATTACTCTGTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28947331  90 - 170955103 TAGGATGAGTTCCAAATATATGAGATTTTTCTGATGAACCAACCACTTATCTCAGGAGAT----------AGAACTCATTCATACCTAATTACTCTGTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1929439  90 -   2996164 TAGGATGAGTTCCAAATATATGAGATTTTTCTGATGAACCAACCACTTATCTCAGGAGAT----------AGAACTCATTCATACCTAATTACTCTGTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1806834  90 -   2157725 TAGGATGAGTTCCAAATATATGAGATTTTTCTGATGAACCAACCACTTATCTCAGGAGAT----------AGAACTCATTCATACCTAATTACTCTGTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28260918  90 -  71996105 TAGGATGAGTTCCAAATATATGAGATTTTTCTGATGAACCAACCACTTATCTCAGGAGAT----------AGAACTCATTCATACCTAATTACTCTGTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1933136  90 +   2316924 TAGGATGAGTTCCAAATATATGAGATTTTTCAGATGAACCAACCACTTATCTCAGGAGAT----------AGAACTCATTCATACCTAATTACTCTGTTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1805878  90 -   3067355 TAGGATGAGTTCTAAATGTATGAGATTTTTCTGATGAACCAACCATTTATCTCGGGAGAT----------AGAACTCATTCATACCGAATTACTCTGTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171346744 100 - 171630274 CCAGATGAGATCCAAATATATGAGATTCTTCTGATTAATCAGCCATTTATCTCAGGAGATGCTGAGGTGCATGGCTGGTTCATACCCAATTACTCTGTTC
i calJac3.chr4             C 0 M 293
s saiBol1.JH378348            180017 100 -    375362 TCAGATGAGATCCAAGTATCTGAGATTCTTCTGATGAATCAGCCATTTATCTCAGGAAATTCTGAAATAAATGACTGGTTCATACCCAATTACTCTGTTC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      171125  99 -    373274 TCAGATGAGATCCATATATATGAGCTTCTCCTGATGAAGAAG-AATTTATCTCAGGAGATTCTGAGATAAATGGCTGGTTCATACCCAATTACTCTGTTC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      117191 100 -    285216 TCAGATGAGATCCAAATATATGAGATTCTTCTGATTAATCAGCCATTTATCTCAGGAGATTCTGAGATAAATGGCTGGTTCATACCCAATTACTCTGTTC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1492805  81 -   2232465 TAGAATAAATTCCAAACATCTAAGATTCTTCTGAAAA---------CTAGATCAGGAGAG----------AGAACTTATTCATATCCAATTACTATATTT
i otoGar3.GL873742         I 434 C 0
s canFam3.chr35             25857487  56 +  26524999 TAGAAGGAGTTTCAAATA----GGATTCTTCTTATGAAATAACCATTTATCTCAGGAAAG----------------------------------------
i canFam3.chr35            I 1 C 0
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=277749.000000
s hg38.chr6_GL000254v2_alt    100732 32 +   4827813 AGGGAGCCTG-CAGACATGCGAATGACATCTCT
s panTro5.chr6              29080878 32 + 175400573 AGGGAGCCTG-CAGACATGCGAATGACATCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29315274 32 + 173848474 AGGGAGCCTG-CAGACATGCGAATGACATCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5115436 33 +   6154872 AGGGAGCCTGCCAGACATGCGAATGACAACTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29297586 32 + 172585720 GGGGAGCCTG-CAGACATGCGAAGGACATCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28947421 32 - 170955103 GGGGAGCCTG-CAGACATGCGAAGGACATCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1929529 32 -   2996164 GGGGAGCCTG-CAGACATGCGAAGGACATCTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1806924 32 -   2157725 AGGGAGCCTG-CAGACATGTGAAGGACATCTCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28261008 32 -  71996105 AGGGAGCCTG-CAGACATGCGAAAGACATCTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1933226 32 +   2316924 AGGGAGCCTG-CAGACATGCGAAGGACATCTCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1805968 32 -   3067355 GGGGAGCCTG-CAGACATGCGAAAGACATCTCT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            180117 32 -    375362 AGGGAGCTTG-CAGACATATGAATGGCATTTCT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      171224 32 -    373274 AGGGAGCTTG-CAGACATATGAATGGCATTTCT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      117291 32 -    285216 AGGGAGCTTG-CAGACATACGAATGGCATTTCT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1492886 32 -   2232465 AGGAAACCTG-CAGACATATGAATGGCAtttct
i otoGar3.GL873742         C 0 I 585
s canFam3.chr35             25857543 25 +  26524999 -------CTG-AAGACATATCAAGTGCATTTCT
i canFam3.chr35            C 0 C 0
e calJac3.chr4             171346844 293 - 171630274 M
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=570381.000000
s hg38.chr6_GL000254v2_alt    100764 79 +   4827813 AGACAATCTACAACCAGAGAGAAGATTGTAACTGGTTGAGTACTGTTTTCTTAAAGTTGA------CAAAA---AGGTGGAGTAATAG
s panTro5.chr6              29080910 79 + 175400573 AGACAATCTACAACCAGAGAGAAGATTGTAATTGGTTGAGTACTGTTTTCTTAAAGTTGA------CAAAA---AGGTGGAGTAATAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29315306 79 + 173848474 AGACAATCTACAACCAGAGAGAAGATTGTAATTGGTTGAGTACTGTTTTCTTAAAGTTGA------CAAAA---AGGTGGAGTAATAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5115469 79 +   6154872 AGACAATCTACAACCAGAGAGAAGATTGTAACTGGTTGAGTACTGTTTTCTTAAAGTTGA------CAAAA---AGGTGGAGTAATAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29297618 84 + 172585720 AGTGCATCTAGAACCACAGAGAAGATTATAACTGGTTGAGTATTGTTTTCCTAAAGATGACAGA-TCAAAA---GGGTGGAGTAATAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28947453 84 - 170955103 AGTGCATCTAGAACCACAGAGAAGATTATAACTGGTTGAGTATTGTTTTCCTAAAGATGACAGA-TCAAAA---GGGTGGAGTAATAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1929561 84 -   2996164 AGTGTATCTAGAACCACAGAGAAGATTATAACTGGTTGAGTATTGTTTTCCTAAAGTTGACAGA-TCAAAA---GGGTGGAGTAATAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1806956 84 -   2157725 AGTGCATCTAGAACCACAGAGAAGATTATAACTGGTTGAGTATTGTTTTCCTAAAGTTGACGGA-TCAAAA---GGGTGGAGTAATAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28261040 84 -  71996105 AGTGCATCTAGAACCAGAGAGAAGATTGTAACTGGTTGAGTATTGTTTTCCTAAAGTTGACAGA-TCAAAA---GGGTGGAGTAATAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1933258 84 +   2316924 AGTGCATCTAGAACCACAGAGAAGATTATAACTGGTTGAGTATTGTTTTCCTAAAGTTGACAGA-TCAAAA---GGGTGGAGTAATAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1806000 84 -   3067355 AGTGCATCTAGAACCAGAGAGAAGATTGTAACGGGTTGAGTATGGTTTTCCTAAAGTTGACAGA-TCAAAA---AGGTAGAGTAATAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            180149 87 -    375362 AGTGCATCTAGAACCAGAGAGAAGATTCTAACTGGTTGAATACTGTTTTCTCAGAGTTGACAGA-TCAAGAGGGGGGTGGAGTAATAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      171256 84 -    373274 AGTGCATCTAGAACCAGAGAGAAGATTCTAACTGGTAGAGTACTGTTTTCTTAGAGTTGACAGA-TCAAAA---GGGTGGAGCAATAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      117323 84 -    285216 AGTGCATCTAGAACCAGAGAGAAGATTCTAACTGGTTGAGTACTGTTTTCTTAGAGTTGACAGA-TCAAAA---CGGTGGAGTAATAG
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25857568 80 +  26524999 AATACATTAGGACCAGGGGAAAAAATTGTAACTGGTTAGGTGCCATTTCTAAGAAGCTGACAGACTAAAAA---AAGTGGATG-----
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1492918 585 -   2232465 I
e calJac3.chr4             171346844 293 - 171630274 M
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=629186.000000
s hg38.chr6_GL000254v2_alt    100843  78 +   4827813 TTTTCATGTAAGGAGCTCTTATATGATAATCTAGAAATTGAATT--CAC--------------------------TCTATATTCTTTGGGATTTACA---TCTTGATTT
s panTro5.chr6              29080989  80 + 175400573 TTTTCATGTAAGGAGCTCTTATATGATAACCTAGAAATTGAATTCACAC--------------------------TCTATATTCTTTGGGATTTACA---TCTTGATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29315385  80 + 173848474 TTTTCATGTAAGGAGCTCTTATATGATAACCTAGAAATTGAATTCACAC--------------------------TCTATATTCTTTGGGATTTACA---TCTTGATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5115548  80 +   6154872 TTTTCATGTAAGGAGCTCTTATATGATAATCTAGAAATTGAATTCACAC--------------------------TCTATATTCTTTGGGATTTACA---TCTTGATTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29297702  80 + 172585720 TTTTCACGTAAGGAACTTTTATATGATAATCTAGAAATTGAATTCACAC--------------------------TCTATATTCTTTGGTATTTACA---TCTTGATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28947537  80 - 170955103 TTTTCACGTAAGGAACTTTTATATGATAATCTAGAAATTGAATTCACAC--------------------------TCTATATTCTTTGGTATTTACA---TCTTGATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1929645  80 -   2996164 TTTTCACGTAAGGAACTTTTATATGATAATCTAGAAATTGAATTCACAC--------------------------TCTATATTCTTTGGTATTTACA---TCTTGATTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1807040  80 -   2157725 TTTTCACGTAAGGAACTTTTATATGATAATCTAGACATTGAATTCATAC--------------------------TCTATATTCTTTGGTATTTACA---TCTTGATTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28261124  80 -  71996105 TTTTCACGTAAGGAACTTTTATATGATAATCTAGAAATTGAATTCACAC--------------------------TCTATATTCTTTGGTATTTACA---TCTTGATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1933342  80 +   2316924 TTTTCACATAAGGAACTTTTATATGATAATCTAGAAATTGAATTCATAC--------------------------TCTATATTCTTTGGTATTTACA---TCTTGATTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1806084  80 -   3067355 TTTTTACGTAAGGAACTTTTATATGATAATCTAGAAATTGAATTCACAC--------------------------TCTGTATTCTTTGGTATTTACA---TATTGATTT
i colAng1.NW_012115566v1   C 0 I 475
s calJac3.chr4             171347137  75 - 171630274 TTTTCATGTAAGGAGATACATG---ATAATCTAGAATTTGAATTCA----------------------------TTCTATTTTCTTTGGTATTTACA---TCTTGATTT
i calJac3.chr4             M 293 C 0
s saiBol1.JH378348            180236  85 -    375362 TTTTCTTGTAAGGAGCTTTTAT---ATAATCTAGAATTTGAATTCACACTC------------------TTTTTTTTTTTTTTTTTTGGTATTTACA---TCTTGATTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      171340  81 -    373274 TTTTCATGTAAGGAGCTTTTATATAATAATCTAGAATTCGAATTCACAC-------------------------TCTATTTTTTTTTGGTATTTACA---TCTTGATTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      117407  78 -    285216 TTTTCATGTAAGGAGATTTTATATGATAATCTAGAATTTGAATTCACAC----------------------------TATTTTCTTTGGTATTTACA---TCTTGATTT
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25857648 108 +  26524999 -TTTCATGTAAAGAGCTTTTATGTTGTGCTCCAGAGTTTGAATCCACACTTAGGATTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCTTACAATGTCTCAACTT
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1492918 585 -   2232465 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=617024.000000
s hg38.chr6_GL000254v2_alt    100921 59 +   4827813 GTTAACAGGGAGAGGGAGGTTTGATTACACTGTTGTAAGTCTCCCACCTTGATTGAATA
s panTro5.chr6              29081069 59 + 175400573 GTTGACAGGGAGAGGGAGGTTTGATTACACTGTTGTAAGTCTCCCACCTTGATTGAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29315465 59 + 173848474 GTTGACAGGGAGAGGGAGGTTTGATTACACTGTTGTAAGTCTCCCACCTTGATTGAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5115628 59 +   6154872 GTTGACAGGGAGAGGGAGGTTTGATTACACTGTTGTAAGTCTCCCACCTTGATTGAATA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29297782 59 + 172585720 GTTGACAGGGAGAGGGAGGTTTGATTACACTGTTGTAAGTCTCCCACCTTGATTGAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28947617 59 - 170955103 GTTGACAGGGAGAGGGAGGTTTGATTACACTGTTGTAAGTCTCCCACCTTGATTGAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1929725 59 -   2996164 GTTGACAGGGAGAGGGAGGTTTGATTACACTGTTGTAAGTCTCCCACCTTGATTGAATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1807120 59 -   2157725 GTTGACAGGGAGAGGGAGGTTTGATTACACTGTTGTAAGTCTCCCACCTTGATTGAATA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28261204 59 -  71996105 GTTGACAGGGAGAGGGAGGTTTGATTACACTGTTGTAAGTCTCCCACCTTGATTGAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1933422 59 +   2316924 GTTGACAGGGAGAGGGAGGTTTGATTACACTGTTGTAAGTCTCCCACCTTGATTGAATA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1806639 59 -   3067355 GTTGACAGGGAGAAGGAGGTTTGATTACACTGTTGTAAGTCTCCCACCTTGATTGAATA
i colAng1.NW_012115566v1   I 475 C 0
s calJac3.chr4             171347212 59 - 171630274 GTTGACAGGGAGAGGGAGGTTTGATTACACTGTTGTAAGTCTCCCACCTTGATTGACTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            180321 59 -    375362 GTTGACAGGGAAAGGGAGGTTTGATTATACAGTTTTAAGTCTCCCACCTTGATTGAATA
i saiBol1.JH378348         C 0 I 328
s cebCap1.NW_016108108v1      171421 59 -    373274 GTTGACAGGGAAAGGGAGGTTTGATTACACTGTTGTAAGTCTCCCACCTTGACTGAATA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      117485 59 -    285216 GTTGACAGGGAGAGGGAAGTTTGATTACACTGTTGTAAGTCTCCCACCTTGATTGAATA
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25857756 59 +  26524999 GTTAACATGGACAGGGAAGATTAGTTATATTGCTCCAAGTTTCCCACCTTCATTGAATA
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1492918 585 -   2232465 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=13575.000000
s hg38.chr6_GL000254v2_alt    100980 2 +   4827813 TT-
s panTro5.chr6              29081128 2 + 175400573 TT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29315524 2 + 173848474 TT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5115687 2 +   6154872 TT-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29297841 2 + 172585720 TT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28947676 2 - 170955103 TT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1929784 2 -   2996164 TT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1807179 2 -   2157725 TT-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28261263 2 -  71996105 TT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1933481 2 +   2316924 TT-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1806698 2 -   3067355 TT-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171347271 2 - 171630274 TT-
i calJac3.chr4             C 0 I 323
s saiBol1.JH378348            180708 2 -    375362 tt-
i saiBol1.JH378348         I 328 C 0
s cebCap1.NW_016108108v1      171480 2 -    373274 TT-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      117544 2 -    285216 TT-
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25857815 2 +  26524999 -TG
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1492918 585 -   2232465 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=73860.000000
s hg38.chr6_GL000254v2_alt    100982 7 +   4827813 AAAAAAG
s panTro5.chr6              29081130 7 + 175400573 AAAAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29315526 7 + 173848474 AAAAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5115689 7 +   6154872 AAAAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29297843 7 + 172585720 AAAAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28947678 7 - 170955103 AAAAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1929786 7 -   2996164 AAAAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1807181 7 -   2157725 AAAAAAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28261265 7 -  71996105 AAAAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1933483 7 +   2316924 AAAAAAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1806700 7 -   3067355 AAAAAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171347596 7 - 171630274 AAAAAAG
i calJac3.chr4             I 323 C 0
s saiBol1.JH378348            180710 7 -    375362 aaaaaaG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      171482 7 -    373274 AAAAAAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      117546 7 -    285216 AAAAAAG
i aotNan1.NW_018494050v1   C 0 I 326
s canFam3.chr35             25857817 7 +  26524999 AAGGAAG
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1492918 585 -   2232465 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=62775.000000
s hg38.chr6_GL000254v2_alt    100989 7 +   4827813 AATTCCT
s panTro5.chr6              29081137 7 + 175400573 AATTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29315533 7 + 173848474 AATTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5115696 7 +   6154872 AATTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29297850 7 + 172585720 AATTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28947685 7 - 170955103 AATTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1929793 7 -   2996164 AATTCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1807188 7 -   2157725 AATTCCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28261272 7 -  71996105 AATTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1933490 7 +   2316924 AATTCCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1806707 7 -   3067355 AATTCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171347603 7 - 171630274 GATTCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            180717 7 -    375362 GATTCCT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      171489 7 -    373274 GATTTCT
i cebCap1.NW_016108108v1   C 0 I 322
s aotNan1.NW_018494050v1      117879 7 -    285216 GATTCCC
i aotNan1.NW_018494050v1   I 326 C 0
s canFam3.chr35             25857824 7 +  26524999 TGTTTCT
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1492918 585 -   2232465 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=1923663.000000
s hg38.chr6_GL000254v2_alt    100996 223 +   4827813 GAACTAGACAGTAAAGGGTTAAATAATC----TTTTTTCTTCAATTAAATATGTCTTTGAAAAGAATAAAACTCTACCTTTTGAGTCAGATTGACTACATGGCCTGATGGATTGTGTCTGCTTCCATATCACTGTGCAGCCAATGGTCCTGCCCACCTGCCGCTTCCCACACATTCACCCAGGGTCTCACG-CATGGCCACGTCCTCATTCCTCTCAGAAGTCCTTAA
s panTro5.chr6              29081144 223 + 175400573 GAACTAGGCAGTAAAGGGTTAAATAATC----TTTTTTCTTCGATTAAATATGTCTTTGAAAAGAATAAAACTCTACCTTTTGAGTCAGATTGACTACATGGCCTGATAGATTGTGTCTGTTTCCATATCACTGTGCAGCCAATGGTCCTGCCCACCTGCCGCTTCCCACACATTCACCCAGGGTCTCACA-CATGGCCACGTCCTCATTCCTCTCAGAAGTCCTTAA
i panTro5.chr6             C 0 I 2
s panPan2.chr6              29315540 223 + 173848474 GAACTAGGCAGTAAAGGGTTAAATAATC----TTTTTTCTTCGATTAAATATGTCTTTGAAAAGAATAAAACTCTACCTTTTGAGTCAGATTGACTACATGGCCTGATGGATTGTGTCTGCTTCCATATCACTGTGCAGCCAATGGTCCTGCCCACCTGCCGCTTCCCACACATTCACCCAGGGTCTCACA-CATGGCCACGTCCTCATTCCTCTCAGAAGTCCTTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5115703 223 +   6154872 GAACTGGACAGTAAAGGGTTAAATAATC----TTTTTTCTTCAATTAAATATGTCTTCGAAAAGAATAAAACTCTACCTTTTGAGTCAGATTGACTACATGGCCTGATGGATTGTGTCTGCTTCCATATCACTGTGCAGCCAATGGTCCTGCCCACCTGCCGCTTCCCACACATTCACCTAGGGTCTCACG-CATGGCCACGTCCTCATTCCTCTCAGAAGTCCTTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29297857 221 + 172585720 GAACTAGACAGTAAAGGGTTAAATAATA------TTTTCTTCAATTAAATATGTATTTGAAAAGAATAAAACTCAACCTTTTAAGTCAGATTGACTACATGGTCTAATGAATAGTGTCTGCTTCCATATCACTGTGCAACCAATGGTCCTGCCCACCTGCCGCTTCCCACACATTTACCCAGGGTCTCACA-CATGGCCACGTCCTCATTCCTCTCAGAAGTCCTTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28947692 221 - 170955103 GAACTAGACAGTAAAGGGTTAAATAATA------TTTTCTTCAATTAAATATGTATTTGAAAAGAATAAAACTCAACCTTTTAAGTCAGATTGACTACATGGTCTAATGAATAGTGTCTGCTTCCATATCACTGTGCAACCAATGGTCCTGCCCACCTGCCGCTTCCCACACATTTACCCAGGGTCTCACA-CATGGCCACGTCCTCATTCCTCTCAGAAGTCCTTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1929800 223 -   2996164 GAACTAGACAGTAAAGGGTTAAATAATA----TTTTTTCTTCAATTAAATATGTATTTGAAAAGAATAAAACTCAACCTTTTAAGTCAGATTGACTACATGGTCTAATGAATAGTGTCTGCTTCCATATCACTGTGCAACCAATGGTCCTGCCCACCTGCCGCTTCCCACACATTTACCCAGGGTCTCACA-CATGGCCACGTCCTCATTCCTCTCAGAAGTCCTTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1807195 223 -   2157725 GAACTAGACAGTAAAGGGTTAAATAATA----TTTTTTCTTCAATTAAATATGTATTTGAAAAGAATAAAACTCAACCTTTTAAGTCAGATTGACTACATGGTCTAATGAGTAGTGTCTGCTTCCATATCACTGTGCAACCAATGGTCCTGCCCACCTGCCGCTTCCCACACATTTACCCAGGGTCTCACA-CATGGCCATGTCCTCATTCCTCTCAGAAGTCCTTAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28261279 222 -  71996105 GAACTAGACAGTAAA-GGTTAAATAATA----TTTTTTCTTCAATTAAATATGTATTTGAAAAGAATAAAGCTCTACCTTTTGAGTCAGATTGACTACATGGTCTAATGAATAGTGTCTGCTTCCATGTCACTGTGCAACCAATGGTCCTGCCCACCTGCCACTTCCCACACATTCACCCAAGGTCTCACA-CATGGCCACGTCCTCATTCCTCTCAGAAGTACTTAA
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012104165v1     1933497 223 +   2316924 GAACTAGACAGTAAAGGGTTAAATAATA----TTTTTTCTTCAATTAAATATGTATTTGAAAAGAATAAAACTCAACCTTTTAAGTCAGATTGACTACATGGTCTAATGAATAGTGTCTGCTTCCATATCACTGTGCAACCAATGGTCCTGCCCACCTGCCGCTTCCCACACATTTACCCAGGGTCTCACA-CATGGCCACGTCCTCATTCCTCTCAGAAGTCCTTAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1806714 219 -   3067355 GAACTAGACAGTAAAGGGTTAAATAATA----TTTTTTCTTCAATTAAAAATGTCTTTGAAAAGAATAAAACTCTACCTTTTGAGTCAGATTGACTACATGGCCTAATGAATAGTGTCTGCTTCCATGTCACTGTGCAACCAATGGTCCTGCCCACCTGCCGCTTCCCACACTTTCACCCAGGGTCTCACA-CATGGCCACATCCTCATTCCTCTCAGAAGTCC----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171347610 227 - 171630274 GAACTAGACAGCAAAGAGTTAAATAATCTTTTTTTTTTTTTCAATTAAGTATGTCTTTGAAAAGAATAAAGCTCTACCTTTTGAGTCAGATTGACCACATGGCCTAATGGATAGTGTCTGCCTCCACCTCACTGTGCAGCCAGAGGTCCTGCCCACTTGCCGCCTCCTACACGTTCACCCGGGGTCTCACG-CATGGCCATGTCCTCATTCCTTTCAGAGGTCCTTAA
i calJac3.chr4             C 0 I 62
s saiBol1.JH378348            180724 208 -    375362 GAACTATACAACAAAGGGTTAAATAATC---TTTTTTTCTTCAATTAAGTATGTCTTTGG-------AAAGCTCTACCTTTTGAGTCAGATTGATCACATGGCCTAAGGGATAGTGTCCGCCTCCACCTCACCGTGCAGCCAGAGGTCCTGCCCA----------CCTGCACATTCTCCCAGGGTCTCACGTTGCGGCCACGTCCTCATTCCTCTTAGAGGTCCTTAA
i saiBol1.JH378348         C 0 I 87
s cebCap1.NW_016108108v1      171818 207 -    373274 GAACTAGACAGCAAAGGGTTAAATAATC---TTTTTTTCTTCAATTAAGTATGTCTTTGA-------AAAGCTCTACCTTTTCAGTCAGATTGACCACATGGCCTAACGTATAGTGTTTGCCTCCACCTCACTGTGGAGCCAGAGGTCCTGCCCA----------CCTACACATTCACCTGGGGTCTCACG-TGTGGCCACGTCCTCATTCCTCTCAGAGGTCCCTAA
i cebCap1.NW_016108108v1   I 322 I 425
s aotNan1.NW_018494050v1      117886 221 -    285216 GAACTAGACAGCAAAGGGTTAAATAATT------TTTTCTTCAATTAAGTATGTCTTTGAAAAGAATAAAGCTCTACCTTCTGAGTCAGATTGACCACACGGCCTAACGGATAGTGTCTGCCTCCACCTCACTGTGCAGCCAGACATCCTGCCCACCTGCCGCCTCCTACACATTCACCCAGGGTCTCACG-CATGGCCACATCCTCATTCCTCTCAGAGGTCCTTAA
i aotNan1.NW_018494050v1   C 0 I 38
s canFam3.chr35             25857831 195 +  26524999 ACACTAGGCAGTAAACGATTAAATAATC---TTTTTTTCACCAATTAAATGTGTCTTTGAAAAAAAGAAAGCACTGC------------GATGACTACTGGGCCTGAGGAATTGTGTCTGCTCCCACAT-----------------TCCCAGACAACTGCTCCCTCTAGCCCCTTCACAGAGGGTCCCACA-TGTAGCCACATCTTCTTTCCTCTAAGAGTTTCTTAA
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1492918 585 -   2232465 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=3276.000000
s hg38.chr6_GL000254v2_alt    101219 1 +   4827813 t
s panTro5.chr6              29081369 1 + 175400573 t
i panTro5.chr6             I 2 C 0
s gorGor5.CYUI01015250v1     5115926 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17             28261502 1 -  71996105 t
i chlSab2.chr17            I 1 C 0
s calJac3.chr4             171347899 1 - 171630274 t
i calJac3.chr4             I 62 C 0
s saiBol1.JH378348            181019 1 -    375362 t
i saiBol1.JH378348         I 87 C 0
s cebCap1.NW_016108108v1      172450 1 -    373274 t
i cebCap1.NW_016108108v1   I 425 C 0
s aotNan1.NW_018494050v1      118145 1 -    285216 t
i aotNan1.NW_018494050v1   I 38 C 0
s canFam3.chr35             25858026 1 +  26524999 T
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1492918 585 -   2232465 I
e colAng1.NW_012115566v1     1806933 0 -   3067355 C
e manLeu1.NW_012104165v1     1933720 0 +   2316924 C
e cerAty1.NW_012001495v1     1807418 0 -   2157725 C
e macNem1.NW_012011356v1     1930023 0 -   2996164 C
e macFas5.chr4              28947913 0 - 170955103 C
e rheMac8.chr4              29298078 0 + 172585720 C
e nomLeu3.chr1a             74119446 399 + 122973662 I
e panPan2.chr6              29315763 0 + 173848474 C

a score=1468084.000000
s hg38.chr6_GL000254v2_alt    101220 179 +   4827813 ttttttttttttttttgagatggagtctcattgtgtcacccaggctggagtgcagtggcatgatcttggctcactgcaacctccgcctccgaggttcaagcaattctcctgcctcagcctcccaagtagcagtgattacaggtggtcgccaccatgcccagctgatttttgAAAGAG-GT
s panTro5.chr6              29081370 179 + 175400573 ttttttttttttttttgagatggagtctcattgtgtcacccaggctggagtgcagtggcatgatcttggctcactgcaacctccgcctccgaggttcaagcaattctcctgcctcagcctcccaagtagcagtgattacaggtgctcgccaccatgcccagctgatttttgAAAGAG-GT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29315763 176 + 173848474 ---tttttttttttttgagatggagtctcattgtgtcacccaggctggagtgcagtggcatgatcttggctcactgcaacctccgcctccgaggttcaagcaattctcctgcctcagcctcccaagtagcagtgattacaggtgctcgccaccatgcccagctgatttttgAAAGAG-GT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5115927 164 +   6154872 ttttttttttttttt---------------ttgtgtcacccaggctggagtgcagtggcatgatcttggctcactgcaacctccgcctccgaggttcaagcaattctcctgcctcagcctcccaagtagcagtgattacaggtggtcaccaccatgcccaactgatttttgAAAGAG-GT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29298078 177 + 172585720 --ttttttttttttttgagatggagtctcattgtgtcacccaggctggagtgcagtggcacgatcttggctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagactcctaagtagcagcgattacaggtggccgccacgatgcccagctgatttttgAAAGAG-GT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28947913 178 - 170955103 -tttttttttttttttgagatggagtctcattgtgtcacccaggctggagtgcagtggcacgatcttggctcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagactcctaagtagcagcgattacaggtggccgccacgatgcccagctgatttttgAAAGAG-GT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1930023 177 -   2996164 --ttttttttttttttgagatggagtctcattgtgtcacccaggctggagtgcagtggcaccatcttggctcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagactcctaagtagcagcgattacaggtggccgccacgatgcccagctgatttttgAAAGAG-GT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1807418 176 -   2157725 ---tttttttttttttgagatggagtctcattgtgtcacccaggctggagtgcagtggcacgatcttggctcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagactcctaagtagcagcgattacaggtggccgccatgatgcccagctgatttttgAAAGAG-GT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28261503 179 -  71996105 ttttttttttttttttgagatggagtctcattgtgtcacccaggctggagtgcagtggcacgatcttggctcactgcaacctccgcctcccgggttcaagcaattctcctgcctcagcctcctaagtagcagcaattacaggtggccaccaccatgcccagctgatttttgAAAGAG-GT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1933720 178 +   2316924 -ttttttcttttttttgagatggagtctcattgtgtcacccaggctggagtgcagtggcatgatcttggctcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagactcctaagtagcagcgattacaggtggccgccacgatgcccagctgatttttgAAAGAG-GT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1806933 176 -   3067355 ---tttttttttttttgagatggagtctcattctgtcacccaggttggagtgtagtggcacaatcttggctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagcctcctaagtagcagcgattacaggtggccgccaccatgcccagctgatttttgAAAGAG-GT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171347900 176 - 171630274 ttttttttttttttttgagatggagtctcgctttgtcacccaggctgcagtgcagtggtgcgatcttggctgactgcaacctccgtctcctgggttcaagcctttctcctgcctcagcctccccagtagcagcgattacaggtccctaccac---gcccagctaatttttAAAAGAG-GT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            181020 169 -    375362 cttttcttttttttttgagatggagtctccctctgtcacccaggctgcagtgcagtggtgcaatcttggctcactgcaacctctgtctcctgggttcaagcctttctcctgcctcagcctccccagtagtagcgattacaggtgcctacca----------ctaATTTATGAAAGAG-GT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      172451 180 -    373274 ttttttgtttttttttgagacggagtctcactctgtcacccaggctgcagtgcagtggtgcgatcttggctcactgcaacctccatctcctgggttcaagcctttctcctgcctcggcctccccagtagcagcgactacaggtgcctaccactatgcccagctaatttttGAAAGAGTGT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      118146 179 -    285216 ttttttttttttttttgagatggagtctcgctctgtcacccaggctgcagtgcagtgctgcgatcttggctcactgcaacctccgtctcctgggttcaagcctttctcctgcctcagcctccccagtagcagcgattacaggtgactaccaccacgcccagctagtttttgAAAGAG-GT
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25858027   0 +  26524999 C
e otoGar3.GL873742           1492918 585 -   2232465 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=2109042.000000
s hg38.chr6_GL000254v2_alt    101399 241 +   4827813 CCT-------TAATTTCTCTGTGGAGAAAA-ATTTTTTTAAAATATGATCTCATTGAAGTATACAACCCCAAAATAAAATATAGTTGAATTTCCAAAATTCATCTACAATGTACCTTAAAATGATTCACTATTGTCCTAGGCCAAAGATAGGCACTGTTTGCTCTCAAAGAAGTACTTCTATCTGTCATATGTCATTTG-TTTTCATTGTCCCAAGATGTTTTTGAAATCTCCATCCTATATTTTCTATA
s panTro5.chr6              29081549 241 + 175400573 CCT-------TAATTTCTCTGTGGAGAAAA-ATTTTTTTAAAATATGATCTCATTGAAGTATACAACCCCAAAATAAAATATAGTTGAATTTCCAAAGTTCATCTACAATGTACCTTAAAATGATTCACTATTGTCCTAGGCCAAGGATAGGCACTGTTTGCTCTCAAAGAAGTACTTCTATCTGTCATATGTCATTTG-TTTTCATTGTCCCAAGATGTTTTTGAAATCTCCATCCTATATTTTCTATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29315939 241 + 173848474 CCT-------TAATTTCTCTGTGGAGAAAA-ATTTTTTAAAAATATGATCTCATTGAAGTATACAACCCCAAAATAAAATATAGTTGAATTTCCAAAGTTCATCTACAATGTACCTTAAAATGATTCACTATTGTCCTAGGCCAAAGATAGGCACTGTTTGCTCTCAAAGAAGTACTTCTATCTGTCATATGTCATTTG-TTTTCATTGTCCCAAGATGTTTTTGAAATCTCCATCCTATATTTTCTATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5116091 242 +   6154872 CCT-------TAATTTCTCTGTGGAGAAAATTTTTTTTTAAAATATGATCTCATTGAAGTATACAACCCCAAAATAAAATATAGTTGAATTTCCAAAATTCATCTACAATGTACCTTAAAATGATTCACTATTGTCCTAGGCCAAAGATAGGCACTGTTTGCTCTCAAAGAAGTACTTCTATCTGTCATATGTCATTTG-TTTTCATTGTCCCAAGATGCTTTTGAAATCTCCATCCTATATTTTCTATA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29298255 240 + 172585720 TCT-------TAATTTCTCCCTGTAGAAAA-ATTTTTTA-AAATATGATCTCATTGAAGTATACAACCCCAAAATAAAATATAGTTGAATTTCCAAAATTCATCTATAATGTACCTTAAAATGATTCACTATTGTCCCAGGCCGAAGATAGGCACTGTTTGCTCTCAAAGAAGTATTTCTGTCTGTCATATGTCATTTG-TTTTCGTTGTCCCAAGATGTTTTTGAAATCTCCATCCTATATTTCCTATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28948091 240 - 170955103 TCT-------TAATTTCTCCCTGTAGAAAA-ATTTTTTA-AAATATGATCTCATTGAAGTATACAACCCCAAAATAAAATATAGTTGAATTTCCAAAATTCATCTATAATGTACCTTAAAATGATTCACTATTGTCCCAGGCCAAAGATAGGCACTGTTTGCTCTCAAAGAAGTATTTCTGTCTGTCATATGTCATTTG-TTTTCGTTGTCCCAAGATGTTTTTGAAATCTCCATCCTATATTTCCTATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1930200 240 -   2996164 TCT-------TAATTTCTCCCTGTAGAAAA-ATTTTTTT-AAATATGATCTCATTGAAGTATACAACCCCAAAATAAAATATAGTTGAATTTCCAAAATTCATCTATAATGTACCTTAAAATGATTCACTATTGTCCCAGGCCAAAGATAGGCACTGTTTGCTCTCAAAGAAGTATTTCTGTCTGTCATATGTCATTTG-TTTTCGTTGTCCCAAGATGTTTTTGAAATCTCCATCCTATATTTCCTATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1807594 239 -   2157725 TCT-------TAATTTCTCCCTGTAGAAAA-ATTTTTT--AAATATGATCTCATTGAAGTATACAACCCCAAAATAAAATATAGTTGAATTTCCAAAATTCATCTATAATGTACCTTAAAATGATTCACTATTGTCCCAGGCCAAAGATAGGCACTGTTTGCTCTCAAAGAAGTATTTCTGTCTGTCATATGTCATTTG-TTTTCGTTGTCCCAAGATGTTTTTGAAATCTCCATCCTATATTTCCTATA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28261682 240 -  71996105 TCT-------TAATTTCTCCCTGTAGAAAA-AATTTTTT-AAATATGATCTCATTGAAATATATAACCCCAAAATAAAATATAGTTGAATTTCCAAAATTCATCTATAATGTACCTTAAAATGATTCACTATTGTCCCAGGCCAAAGATAGGCACTGTTTGCCCTCAAAGAAGTATTTCTGTCTTTCATATGTCATTTG-TTTTCGTTGTCCCAAGATGTTTTTGAAATCTCCATCCTATACTTCCTATA
i chlSab2.chr17            C 0 I 11
s manLeu1.NW_012104165v1     1933898 240 +   2316924 TCT-------TAATTTCTCCCTGTAGAAAA-AATTTTTT-AAATATGATCTCATTGAAGTATACAACCCCAAAATAAAATATAGTTGAATTTCCAAAATTCATCTATAATGTACCTTAAAATGATTCACTATTGTCCCAGGCCAAAGATAGGCACTGTTTGCTCTCAAAGAAGTATTTCTGTCTGTCATATGTCATTTG-TTTTCGTTGTCCCAAGATGTTTTTGAAATCTCCATCCTATATTTCCTATA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1807109 240 -   3067355 TCT-------TAATTTCTCCCTGGAGAAAA-AATTTTTT-AAATATGATCTCATTGAAGTATACAACCCCAAAATAAAATATAGTTGAATTTCCAAAATTCATCTATAACGTACCTTAAAATGATTCACTATTGTCCCAGGCCAAAGACAGGCACTGTTTGCTCTCAAAGAAGTATTTCTGTCTGTCATATGTCATTTG-TTTTTGTTGTCCCAAGATGTTTTTGAAATCTCCATCCTGTATTTCCTATA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171348076 245 - 171630274 TCTTAATTTCTAATTTCTCCCTGGAGAAAA-AAATTTT--AAATATGATCTTGTTGAAGTATACAACCCCAAAATAAAATACAGTTGAGTTTCCAAAATTCATCAATAATGTACCTTACAATGATTCACTGCTGTCCGGGGCCAAAGTTAGGCATTGCTTGCTTGCGAATAAGCGCTTCAGTCTGTCATATGCCATTTG-TTTTCATTGTCCCAAGAT-TTTTTGAAATCTCCATCCTATATTTCCTACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            181189 244 -    375362 TCTTAATTTCTAATTTCTCCCTGGAGAAAA-AAATTTA--AAAGATGATCTTGTTGAAGTATACAAACCCAAAATAAAATACAGTTGAGTTTCCAAAATACATCAATAATGTACCTTAAAATGATTCACTG-TGTCCTGGGCCAAAGTTAGGCACTGTTTGCTCGCAAAGAAGTACTTCAGTCTGTCATATGCCATTTG-TTTTCATTGTTCCAAGAT-TTTTTGAAATCTCCATCCTATATTTCCTATA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      172631 245 -    373274 TCTTAATTTCTAATTTCTCCCTGGAGAAAA-AAATTTA--AAATATGATCTTGTTGAAGTATACAAACCCAAAATAAAATACAGTTGAGTTTCCCAAGTTCATCAATAATGTACCTTAAAATGATTCACTGTTGTCCTGGGCCAAAGTTAGGCACTGTTTGCTCGCAAAGAAGTACTTCAGTCTGTCATATGCCATTTG-TTTTCATTCTCCCAAGAT-TTTTTGAAATCTCCATCCTATATTTCCTATA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      118325 243 -    285216 T-TTAATTTCTAATTTCTCCCTGGACAAAA-AAATTTA--AAATATGGTCTTGTTGAAGTATACAACCCCAAAATAAAATACAGATGAGTTTCCAAAATTCATCAGTAGTGTACCTTAAAATGATTCACTGTTGTCCTGGGCCAAAGTTAGGCACTGTTAGCTCGCACAGAAGTACTTCGGTCTGTCATATGCCCTTTG--TTTCATTGTCCCAAGAT-TTTTGGAAATCTCCATCCCACATTTCCTACA
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25858027 234 +  26524999 CTT-------TAATTTCTCCCTG-AGAAAG-CTAAACA--AGATATAAGCTTGTTGAAAGATAGAACACCCAAATAAAACATGATTGAATATCCAGAATTCATCTACAATGTACTTTAAAATGAGTCACTTTTATCCTGAGTCAAAGTTAGATCCAACTTGCTTACAAAGAAGTACCTCAGTC-ATC--ACGTTATTTGTTTTTTATTGGCTTACAAT--TTTAGAAATGTCTGTCTGATATTTCCCATA
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1492918 585 -   2232465 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=44436.000000
s hg38.chr6_GL000254v2_alt    101640 6 +   4827813 GCTTTC
s panTro5.chr6              29081790 6 + 175400573 GCTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29316180 6 + 173848474 GCTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5116333 6 +   6154872 GCTTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29298495 6 + 172585720 GCTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28948331 6 - 170955103 GCTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1930440 6 -   2996164 GCTTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1807833 6 -   2157725 GCTTTC
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     1934138 6 +   2316924 GCTTTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1807349 6 -   3067355 CCTTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171348321 6 - 171630274 GCATTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            181433 6 -    375362 GCATTC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      172876 6 -    373274 GCATTC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      118568 6 -    285216 GCATTC
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25858261 6 +  26524999 GCTTCC
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1492918 585 -   2232465 I
e chlSab2.chr17             28261922 11 -  71996105 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=415905.000000
s hg38.chr6_GL000254v2_alt    101646 43 +   4827813 TTATATTAAACTCTTGGTTTTTGCATCCTATCCATTTCTACCC
s panTro5.chr6              29081796 43 + 175400573 TTATATTAAACTCTTGATTTTTGCATCCTATCCATTTCTACCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29316186 43 + 173848474 TTATATTAAACTCTTGGTTTTTGCATCCTATCCATTTCTACCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5116339 43 +   6154872 TTATATTAAACTCTTGGTTTTTGCATCCTATCCATTTCTACCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29298501 43 + 172585720 TTATATTAAACTCTTGGTTTTTGCATCCTATCCATTTCTACCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28948337 43 - 170955103 TTATATTAAACTCTTGGTTTTTGCATCCTATCCATTTCTACCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1930446 43 -   2996164 TTATATTAAACTCTTGGTTTTTGCATCCTATCCATTTCTACCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1807839 43 -   2157725 TTATATTAAACTCTTGGTTTTTGCATCCTATCCATTTCTACCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28261933 43 -  71996105 TTATATTAAACTCTTGGTTTTTGCATCCTATCCATTTCTACCT
i chlSab2.chr17            I 11 C 0
s manLeu1.NW_012104165v1     1934144 43 +   2316924 TTATATTAAACTCTTGGTTTTTGCATCCTATCCATTTCTACCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1807355 43 -   3067355 TTATATTAAACTCTTGATTTTTGCATCCTGTCCATTTCTACCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171348327 43 - 171630274 TTATATTAAACTCTTGGTTTTTTCATCCTATCCCTTTCCACCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            181439 43 -    375362 TTATATTAAACTCCGAGTTTTTTCATCCTATCCATTTCTACCT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      172882 42 -    373274 TTATATTAAACTCTTGG-TTTTTCATCCTATCCATTTCTACCT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      118574 43 -    285216 TTCTATTAAACTCTTGGTTTTTTCATTCTATCCATTTCTACCT
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25858267 43 +  26524999 TCATACTAAGTTCTTGGCTTTTTCACCATATCCTTTTCCTCTT
i canFam3.chr35            C 0 I 180
e otoGar3.GL873742           1492918 585 -   2232465 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=2543019.000000
s hg38.chr6_GL000254v2_alt    101689 313 +   4827813 TAAATTACAGAGGTGGACTTCCTTAAAGAAGTCTATTGTGGGGAGCAG-AAAAAAATATTTCCA-----TTTGGGCCTGAGCCCTAGCAT--------AAAGCAATGGTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCATGATA-ATTTTCCTCATGCTTTTACTATATTCC--TTTGCAAATTG----ATTCCCATGATTGAAGCCTGTGAATAATTTTTTTCTGCCACAGTGAGTATAAGTGGCAAAGAGACATTGTGGAACTGTACTTTGAAAATGAGAGAAGAGAGAG-AAAAAATGTCAACAGAACAGAAAATTATCTATTTCCCACATC-AAGAAAGTCTGGGTCCTCAGT
s panTro5.chr6              29081839 313 + 175400573 TAAATTACAGAGGTGGACTTCCTTAAAGAAGTCTATTGTGGGGAGCAG-AAAAAAATATTTCCA-----TTTGGGCCTGAGCCCTAGCAT--------AAAGCAATGGTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCATGATA-TTTTTCCTCATGCTTTTACTATATTCC--TTTGCAAATTG----ATTCCCATGATTGAAGTCTGTGAATAATTTTTTTCTGCCACAGTGAGTATAAGTGGCAAAGAGACATTGTGGAACTGTACTTTGAAAATGAGAGAAGAGAGAG-AAAAAATGTCAACAGAACAGAAAATTATCTATTTCCCACATC-AAGAAAGTCTGGGTCCTCAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29316229 314 + 173848474 TAAATTACAGAGGTGGACTTCCTTAAAGAAGTCTATTGTGGGGAGCAG-AAAAAAATATTTCCA-----TTTGGGCCTGAGCCCTAGCAT--------AAAGCAATGGTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCATGATATTTTTTCCTCATGCTTTTACTATATTCC--TTTGCAAATTG----ATTCCCATGATTGAAGTCTGTGAATAATTTTTTTCTGCCACAGTGAGTATAAGTGGCAAAGAGACATTGTGGAACTGTACTTTGAAAATGAGAGAAGAGAGAG-AAAAAATGTCAACAGAACAGAAAATTATCTATTTCCCACATC-AAGAAAGTCTGGGTCCTCAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5116382 313 +   6154872 TAAATTACAGAGGTGGACTTCCTTAAAGAAGTCTATTGTGGGGAGCAG-AAAAAAATATTTCCA-----TTTGGGCCTGAGCCCTAGCAT--------AAAGCAATGGTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCATGATA-TTTTTCCTCATGCTTTTACTATATTCC--TTTGCAAATTG----ATTCCCATGATTGAAGCCTGTGAATATTTTTTTTCTGCCACAGTGAGTATAAGTGGCAAAGAGACATTGTGGAACTGTACTTTGAAAATGagagaagagagag-aaaaaatgacaacagaacagaaAATTATCTATTTCCCACATC-AAGAAAGTCTGGGTCCTCAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29298544 309 + 172585720 TAAATTACAGAGGTGGACTTCCTTA---AAGTCTATTGTGGGGAGCAT-AAAAAAA-ATTTCCA-----TTTGGGCCTGAGCCCTAGCAT--------AAAGCAATGATAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCATGATA-TTCTTCCTCACACTTTTACTATATTCC--TTTGCAAATTG----ATTCCCATGACTGAAGCCTGTGAATAATTTTCTCCTTCCACAGTGGGTATAAGTGGCAAAGAGACATTGTGGAGCTGTACTTTAAAAACAAGAGAAGAGAGAG-AAAAAATGTCAACAGAACAGAAAATGATCTATTTCCCACATC-AAGAAAGTGTGGCTCCTCAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28948380 310 - 170955103 TAAATTACAGAGGTGGACTTCCTTA---AAGTCTATTGTGGGGAGCAT-AAAAAAATATTTCCA-----TTTGGGCCTGAGCCCTAGCAT--------AAAGCAATGGTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCATTATA-TCCTTCCTCACACTTTTACTATATTCC--TTTGCAAATTG----ATTCCCATGACTGAAGCCTGTGAATAATTTTCTCCTTCCACAGTGGGTATAAGTGGCAAAGAGACATTGTGGAGCTGTACTTTGAAAACAAGAGAAGAGAGAG-AAAAAATGTCAACAGAACAGAAAATGATCTATTTCCCACATC-AAGAAAGTGTGGCTCCTCAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1930489 310 -   2996164 TAAATTACAGAGGTGGACTTCCTTA---AAGTCTATTGTGGGGAGCAT-AAAAAAATATTTCCA-----TTTGGGCCTGAGCCCTAGCAT--------AAAGCAATGGTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCATGATA-TTCCTCCTCACACTTTTACTATATTCC--TTTGCAAATTG----ATTCCCATGACTGAAGCCTGTGAATAATTTTCTCCTTCCACAGTGGGTATAAGTGGCAAAGAGACATTGTGGAGCTGTACTTTGAAAACAAGAGAAGAGAGAG-AAAAAATGTCAACAGAACAGAAAATGATCTATTTCCCACATC-AAGAAAGTGTGGCTCCTCAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1807882 310 -   2157725 TAAATTACAGAGGTGGACTTCCTTA---AAGTCTATTGTGGGGAGCAT-AAAAAAATATTTCCA-----TTTGGGCCTGAGCCCTAGCAT--------AAAGCAATGGTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCATGATA-TTCTTCCTCACACTTTTACTATATTCC--TTTGCAAATTG----ATTCCCATGACTGAAGCCTGTGAATAATTTTCTCCTTCCACAGTGGGTATAAGTGGCAAAGAGACATTGTGGAACTGTACTTTGAAAACAAGAGAAGAGAGAG-AAAAAATGTCAACAGAACAGAAAATGATCTATTTCCCACATC-AAGAAAGTGTGGCTCCTCAGT
i cerAty1.NW_012001495v1   C 0 I 1343
s chlSab2.chr17             28261976 306 -  71996105 TAAATT--AGAGGTGGATTTCCTTA---AACTCTATTGTGGGGGGCAG-AAAAAAATATTTCCA-----TTTGGGCCTGAGCCCTAGCAT--------AAAGCAATGGTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGATGATA-TTCTTCCTCACACTTTTACTATATTCC--TTTGCAAATTG----ATTCCCATGATTGAAGCCTGTGAATAATTTTCTCCTTCCACAGTGGGTATAAGTGGCAAAGAGACATTGTGGAACTGTACTTTGAAAACAAGAGA--AGAGAG-AAAAAATGTCAACAGAACAGAAAATTATCTATTTTCCACATC-AAGAAAGTGTGGTTCCTCAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1934187 309 +   2316924 TAAATTACAGAGGTGGACTTCCTTA---AAGTCTATTGTGGGGAGCAT-AAAAAAA-ATTTCCA-----TTTGGGCCTGAGCCCTAGCAT--------AAAGCAATGGTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCATGATA-TTCTTCCTCACACTTTTACTATATTCC--TTTGCAAATTG----ATTCCCATGACTGAAGCCTGTGAATAATTTTCTCCTTCCACAGTGGGTATAAGTGGCAAAGAGACATTGTGGAACTGTACTTTgaaaacaagagaagagagag-aaaaaatgtcaacagaacagaaAATGATCTATTTCCCACATC-AAGAAAGTGTGGCTCCTCAGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1807398 294 -   3067355 TAAATTACAGAGGTGGACTTCCTTA---AAGTCTATTGTGGTGAGCAG-AAAAAAATATTTCCA-----TGTGGGCCTGAGCGCTAGCAA--------AAAGCAATGGTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCATGATA-TTCTTCCTCACGCTTTTACTATATTCC--TTTGCAAATTG----ATTCCCGTGATTGAAGCCTGTGAATAATTTTCTCCTTCCACAGTGGGTATAAGTGGCAAAGAGACATTGTGGAACTGTACTTTCAAAACGAGAGAAGAGAGAG-CAAAAATGTT----------------ATCTATTTCCCACATC-AAGAAAGTGTGGCTCCTCAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171348370 284 - 171630274 T-AACTACAGA------CTTCCTTAGAGAAGGCTACTGT-GGGAGCAG-AAAAGAACATTTCCA-----TTTGG---------------------------ACAGTGGTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCATGATA-TTCTTTCTCACGCTTTTACTATATTCC--TTTGCAAATTT----ATTCCCAGGATTGAAGCCTGCGAATAATTTTCTCCTGCCACAGTGGGCATAAGTGGCAAACAGACACTGTGGAACTGTACTTTGAAAAGAAGAAAAGAGAGAG-AAAAAATGTCAACAGAACAGAAAAGTA--TGTTTCCCACATG-AACAAAATCTGGCTCCTTACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            181482 315 -    375362 T-AACTACAGA------CTTCCTTAGAGAAGTCTACTGTGGGGAGCAG-AAAAAAAAATTTCCA-----TTTGGGCCTGAGCCCTAGCATAATACAGAAAAGCAGTGGTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCATGATA-TTCTTTCTCATGCTTTTACTATATTCC--TTTGCAAATTT----ATTCCCATGATTGAAGCCTGCGAATAATTTTCTCCTGCCACAGTGGGCATAAGCGGCAAACAGACACTGTGGAACTGTACTTTGAAAACAAGAAAAGAGAGAGAAAAAAATGGCAATAGAACAGAAAAGTATCTGTTTCCCACACG-AACAAAGTCTGGCTCCTCGGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      172924 311 -    373274 T-TACTACAGA----------CTAAGAGAAGTCTACTGTGGGGAGCAG-AAAAAAAAACTTCCA-----TTTGGGCCTGAGCCCTAGCATAATACAGAAAAGCAGTGGTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCATGATA-TTCTTTCTCATGCTTTTACTATATTCC--TTTGCAAATTT----ATTCCCATGATTGAGGCCTGCGAATAATTTTCTCCTGCCACAGTGGGCATAAGCAGCAAACAGACACTATGGAACTGTACTTTGAAAACAAGAAAAGAGAGAGAAAAAAATGTCAACAGAACAGAAAAGTATCTGTTTCCCACATG-AACAAAGTCTGGCTCCTCGGT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      118617 316 -    285216 T-AACTACAGA------CTTCCTTAGAGAAGTCTACTGTGGGGAGCAGAAAAAAAAAATTTCCA-----TTTGGGCCTGAGCCCTGGCATAATACAGAAAAGCAGTGGTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCATGATA-TTCTTTCTCATGCTTTTACTATATTCC--TTTGCAAATTT----ATTCCCATGATTGAAGCCTGCAAATAATTTTCTCCTGCCACAGTGGGTATAAGTGGCCAACAGACACTGTGGAACTGTACTTTGAAAACAAGAAAAGAGAGAGAAAAAAATGTCAACACAAAAGAAAAGTATCTGTTTCCCACATG-AACAAAGTCTGGCTCCTCAGT
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25858490 474 +  26524999 TAAATCACAGAAGTGGATTTCCATGGAGAAGTTTATGGTTAGAA-----GGAAGGATATTTTTAAAATTTTTGGGCCTGAGTCCTAATATAATCCAGAAAAGCCATAGTGATGATTTATTACATTTTTTTTTTTAAGATATTATTCGATCTTGGGACTCGATCCTCGATCCTAGGACTCGATCCTCGATCTtaggactcgatccttgggactccaggatcacgccctgggccaaaggcaggcactaaaccactgagccacccagggatcccCAATTCATTATA-TTCTTTCTCAAATTTTGCCTTTTTTTCTTTTTGCAACTTGATGAATTCCCATAGTTGGAGCATGTGAATAATTTCCTCCTGACATGTTG----------GCAGGAAGATACTGTAAAATTGTACCTTGATAAAAAGAAAAGAG-----AAACTATGTCAGCAGAACAGAAAGTGA-CTGTTGCTCCCATTAAAGAAAGTCTGGCTCCTGAGC
i canFam3.chr35            I 180 C 0
e otoGar3.GL873742           1492918 585 -   2232465 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=3374817.000000
s hg38.chr6_GL000254v2_alt    102002 420 +   4827813 ACTAGCTCTGAATCTTTCTTTAAAGAAGTAAACT-GAAACCCAAGACATCTTAATCTGAGAAAGAATGACTTTTGGAACTTATTTTCTCCATTGAAAATTTCCTAATCACTTCACAGGGACAGAGGTGGCCTGATATTATATC------GGAAACCAAGGATTTCCCAATTCTTGAGATATCCTTCAGCTCACACTTTCATTAGGGTTAGCAAAGGGTTTTGGATCTTTAAAATCTATCACAGGGCTTAGAATACAAAGTGGTGTTAATACAAAAGTTCTTGAAGATTTGGTGGTAGCTGATGAGAAGAGGGCTGTGTATTCTGGAATGATTACAAGGTCTTATTCTATTTAAAATGTTTCAGAG------CAAGGATACAAACTTCCCAGTTTACATTAGAAGTTAGCACAGCCTTTATTGCAAAACTTGCG
s panTro5.chr6              29082152 420 + 175400573 ACTAGCTCTGAATCTTTCTTTAAAGAAGTAAACT-GAAACCCAAGACATCTTAATCTGAGAAAGAATGACTTTTGGAACTTATTTTCTCCATTGAAAATTTCCTAATCACTTCACAGGGACAGAGGTGGCCTGATATTATATC------AGAAACCAAGGATTTTCCAATTCTTGCGATGTCCTTCAGCTCACACTTTCATTAGGGTTAGCAAAGGGTTTTGGATCTTTAAAATCTATCACAGGGCTTAGAATACAAAGTGGTGTTAATACAAAAGTTCTTGAAGATTTGGTGGTAGCTGATGAGAAGAGGGCTGTGTATTCTGGAATGATTACAAGGTTTTATTCTATTTAAAATGTTTCAGAG------CAAGGATACAAACTTCCCAGTTTACATTAGAAGTTAGCACAGCCTTTATTGCAAAACTTGCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29316543 420 + 173848474 ACTAGCTCTGAATCTTTCTTTAAAGAAGTAAACT-GAAACCCAAGACATCTTAATCTGAGAAAGAATGACTTTTGGAACTTATTTTCTCCATTGAAAATTTCCTAATCACTTCACAGGGACAGAGGTGGCCTGATATTATATC------GGAAACCAAGGATTTTCCAATTCTTGCGATGTCCTTCAGCTCACACTTTCATTAGGGTTAGCAAAGGGTTTTGGATCTTTAAAATCTATCACAGAGCTTAGAATACAAAGTGGTGTTAATACAAAAGTTCTTGAAGATTTGGTGGTAGCTGATGAGAAGAGGGCTGTGTATTCTGGAATGATTACAAGGTTTTATTCTATTTAAAATGTTTCAGAG------CAAGGATACAAACTTCCCAGTTTACATTAGAAGTTAGCACAGCCTTTATTGCAAAACTTGCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5116695 420 +   6154872 ACTAGCTCTGAATCTTTCTTTAAAGAAGTAAACT-GAAACCCAAGACATCTTAATCTGAGAAAGAATGACTTTTGGAACTTATTTTCTCCATTGAAAATTTCCTAATCACTTCACAGGGACAGAGGTGGCCTGATATTATATC------GGAAACCAAGGATTTCCCAATTCTTGCGATATCCTTCAGCTCACACTTTCATTAGGGTTAGCAAAGGGTTTTGGATCTTTAAAATCTATCACAGGGCTTAGAATACAAAGTGGTGTTAATACAAAAGTTCTTGAAGATTTGGTGGTAGCTGATGAGAAGAGGGCTGTGTATTCTGGAATGATTACAAGGTCTTATTCTATTTAAAATTTTTCAGAG------CAAGGATACAAACTTCCCAGTTTACATTAGAAGTTAGCACAGCCTTTATTGCAAAACTTGCG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29298853 419 + 172585720 ACTAGCTCTGAATCTTTCTTTAAAGAAGTAAACT-GAAACCCAAGTCATCTTAATCTGAGAAAGAATGACTTTTGGAACTTATTTTCTCCACTGAAAATTTCCTAATCACTTAACAGGGAGAGAGGTGGCCTGACATTATATC------AGAAACCCAGGATTTCCCAATTCTTGCGATATCCTTCAGCTCACACGTTCATTAGGATTAGC-AAGGGTTTTGGATCTTTAAAATCTATCACAGGGCTTAGAATACAAAATGGAGTTAATACAAAAGCTCCTGAAGATTTGGTGGTAGTTGATCAGGAGAGGGCTGTGTATTCTGGAATGATTACAAAATCTTATCCTATTTAAAATGTTTCAGAG------CAAAGATACAAACTTCCCAGTTTACATTAAAAGTTACCACAGCCTTTATTGCAAAACTTGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28948690 404 - 170955103 ACTAGCTCTGAATCTTTCTTTAAAGAAGTAAACT-GAAAC---------------CTGAGAAAGAATGACTTTTGGAACTTATTTTCTCCACTGAAAATTTCCTAATCACTTAACAGGGAGAGAGGTGGCCTGACATTATATC------GGAAACCCAGGATTTCCCAATTCTTGCGATATCCTTCAGCTCACACGTTCATTAGGATTAGC-AAGGGTTTTGGATCTTTAAAATCTATCACAGGGCTTAGAATACAAAATGGAGTTAATACAAAAGCTCCTGAAGATTTGGTGGTAGTTGATCAGGATAGGGCTGTGTATTCTGGAATGATTACAAAATCTTATCCTATTTAAAATGTTTCAGAG------CAAAGATACAAACTTCCCAGTTTACATTAAAAGTTACCACAGCCTTTATTGCAAAACTTGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1930799 419 -   2996164 ACTAGCTCTGAATCTTTCTTTAAAGAAGTAAACT-GAAACCCAAGTCATCTTAATCTGAGAAAGAATGACTTTTGGAACTTATTTTCTCCACTGAAAATTTCCTAATCACTTAACAGGGAGAGAGGTGGCCTGACATTATATC------GGAAACCCAGGATTTCCCAATTCTTGTGATATCCTTCAGCTCACACGTTCATTAGGATTAGC-AAGGGTTTTGGATCTTTAAAATCTATCACAGGGCTTAGAATACAAAATGGAGTTAATACAAAAGCTCCTGAAGATTTGGTGGTAGTTGATCAGGAGAGGGCTGTGTATTCTGGAATGATTACAAGATCTTATCCTATTTAAAATGTTTCAGAG------CAAAGATACAAACTTCCCAGTTTACATTAAAAGTTACCACAGCCTTTATTGCAAAACTTGAG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28262282 419 -  71996105 ACTAGCTCTGAATCTTTCTTTAAAGAAGTAAACT-GAAACCCAAGACATCTTAATCTGAGAAAGAATGACTTTTGGAACTTATTTTCTCCACTGAAAATTTCCTAATCACTTAACAGGGAGAGAGGTGGCCTGACATTATATC------GGAAACCCAGGATTTCCCAATTCTTGCGATATCCTTCAGCTCACACGTTCATTAGGATTAGC-AAGGGTTTTGGATCTTTAAAATCTATCACAGGGCTTAGAATACAAAATGGAGTTAATACAAAAACTCCTGAAGATTTGGTAGTAGTTGATCAGGAGAGGGCTGTGTATTCTGGAATGATTACAAGATCTTATCCTATTTAAAATGTTTCAGAG------TAAAGATACAAACTTCCCAGTTTATATTAAAAGTTAGCACAGCCTTTATTGCAAAACTTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1934496 419 +   2316924 ACTAGCTCTGAATCTTTCTTTAAAGAAGTAAACT-GAAACCCAAGACATCTTAATCTGAGAAAGAACGACTTTTGGAACTTATTTTCTCCACTGAAAATTTCCTAATCACTTAACAGGGAGAGAGGCGGCCTGACATTATATG------GGAAACCCAGGATTTCCCAATTCTTGCGATATCCTTCAGCTCACACGTTCATTAGGATTAGC-AAGGGTTTTGGATCTTTAAAATCTATCACAGGGCTTAGAATACAAAATGGAGTTAATACAAAAGCTCCTGAAGATTTGGTGGTAGTTGATCAGGAGAGGGCTGTGTATTCTGGAATGATTACAAGATCTTATCCTATTTAAAATGTTTCAGAG------CAAAGATACAAACTTCCCAGTTTACATTAAAAGTTAGCACAGCCTTTATTGCAAAACTTGAG
i manLeu1.NW_012104165v1   C 0 I 323
s colAng1.NW_012115566v1     1807692 419 -   3067355 ACTAGCTCTGAATCTTTCTTTAAACAAGTAAACT-GAAACCCAAGACATCTTAATCTGAGAAAGAATGGCTTACGGAACTTATTTTCTCCACTGAAAATTTCGTAATCACTTCACAGGGAGAGAGGTGGCCTGACATTATATC------GGAAACCAAGGATTTCCCAATTCTTGCGATATCCTTCAGCTCACACGTTCATTAGGATTAGC-AAGGGTTTTGGATCTTTAAAATCTATCACGGAGCTTAGAATACAAAATGCAGTTAATACAAAAGTTCCTGAAGATTTGGTGGTAGTTGATGAGGAGAGGGCTGTATATTCTGGAATGATTACAAGGTCTTATCCTATTTAAAATGTTTCAGAG------CAAAGATACAAACTTCCCAGTTTACATTAAAAGTTAGCACAGCCTTTATTGCAAAACTTGAG
i colAng1.NW_012115566v1   C 0 I 11
s calJac3.chr4             171348654 424 - 171630274 ACTAGCTCTGAATCTTGCTTTTAAAAAGTAAACT-GAAAACCAAGACATCTTAATCTGAGGAAGAATATCTTTTGGAACTTACTTTCTCCTTTGAAAATTCCCTAATCACTTCACAGGAAGAGAGGTGGCCTGACATTATAAC------AGAAACCAAGGATTTCCCAATTCTTGCTCTATCCTGCAGCTCACACTTT-ATTAGGGTTACT-AAGGGTTTTGGATCTTTAAAATCTATCACAGGGCTTAGAACACAAAGTGGTGTTAACACAAAAGTTCCCGAGGATTTGGTGGTGGCTGATGAGGAGAGGGCTGTGTATTCTGGAATAATTACAAGGTCTTatcttatttatactgttgcagagcagagacaaagatacaaacttcccagtttacatcagaagttagcacagcctctattgcaaaacttgca
i calJac3.chr4             C 0 I 11
s saiBol1.JH378348            181797 425 -    375362 ACTACCTCTGAATCTTTCTTTAAAAAAGTAAACT-GAAAACCAAGACATCTTAATCTGGGAAAGAATATCTTTTGGAACTTACTTTCGCCTTTGAAAATTCCCTAATCACTTCACAGGGAGAGAGGTGGCCTGACATTATAAC------AGAAACCAAGGATTTCCCAATTCTTGCTATATCCTTCAGCTCACACTTTCATTAGAGTTACT-AAGGGTTTTGGATCTTTAAAATCTATCACAGGGCTTAGAACACAAAGTGGTGTTAACACGAAAGTTCCTGAAGATTTGGTGGTGGCTGATGAGGAGAGGGCTGTGTATTCTGGGATAATTACAAGGTCTTATCCTATTTAAACTGTTGCAGAGCAGAGACAAAGATACAAACTTCACAGTTTACATTAGAAGTTAGCACAGCTTCTATTGCAAAACTTGCA
i saiBol1.JH378348         C 0 I 11
s cebCap1.NW_016108108v1      173235 425 -    373274 ACTAGCTCTGAATCTGTCTTTAAAAAAGTAAACT-GAAAACCAAGACATCTTAATCTGAGAAAGAATATCTTTTGGAACTTACTTTCTCCTTTGAAAATTCCCTAATCACTTCACAGGGAGAGAGGTGGCCTGACATTATAAC------AGAAACCAAGGATTTCCCAATTCTTGCTATATCCTTCAGCTCACACTTTCATTAGGGTTACT-AAGGGTTTTGGATCTTTAAAATGTATCACAGGGCTTAGAACACAAAGTGGTGTTAACACAAAAGTTCCTGAAGATTTGGTGGTGGCGGATGAGGAGAGGGCTGTGTCTTCTGGAATAATTACAAGGTCTTATCCTATTTAAACTGTTGCAAAGCAGCGACAAAGATACAAACTTCCCAGTTTACACTAGAAGTTAGCACAGCCTCTATTGCAAAACTTGCA
i cebCap1.NW_016108108v1   C 0 I 11
s aotNan1.NW_018494050v1      118933 425 -    285216 ACTAGCTCTGAATCTTTCTTTAAAAAAGTAAACT-GAAAACGAAGACATCTTAATCTGAGAAAGAATATCTTTTGGAACTTACTTTCTCCTTTGAAAATTCCCTAATCACTTCACAGGGTGAGAGGTGGCCTGACATTATAAC------AGAAACCAAGGATTTCCCAATTCTTGCTATAACCTTCAGCTCACACTTTCATTAGGGTTACT-AAGGGTTTTGGATCTTTAAAATCTATCACAGGTCTTAGAACACAAAGTGGTGTTAACACAAAAGTTCCTGAAGATTTGGTGATGGCTGATGAGGAGAGGGCTGTGTATTCTGGAATAATTACAAGGTCTTatcctatttaaactgttgcagagcagagacaaagatacaaacttcccagtttacatcagaagttagcacagcctcgattgcaaaacttgca
i aotNan1.NW_018494050v1   C 0 I 301
s canFam3.chr35             25858964 419 +  26524999 ACTAGTTCTGACTCTTT-TATGGAGAAGTAAATTCCAAAGCCAGGACATCTTACTTTGAGAAAGAATTTCCCTTGGAAGTTATTTTCTCCTTTG-AAATTCCCTAATCGAATCACAGGGAAAGAGGTGTTGTGACATTGTCTTTGTTCAGGGAACCAGGGCTCCCCCAATCAATGCATAATCCTTCAGCCCACACTTCCATTGTGGTTGCT-AAGGGTTTTGTATCTTCAAAATTTATCACAAGGCCTAATACCCAAAAGCAGGCTAATACCAAAGTTCTTAAAGATTTGAT-------GAGGAAGAGCCAGCTCTGAGTATGGAAATGATTACAAGATACTATCCTACTTAAAATCTTGCTGAGCAGAGACAAAGATACAAAGTTCCCAGTT--CATTGGAAGTTAGCACAGTCTTGAGTGCAAAACTTG--
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1492918 585 -   2232465 I
e cerAty1.NW_012001495v1     1808192 1343 -   2157725 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=21294.000000
s hg38.chr6_GL000254v2_alt    102422 3 +   4827813 AAA
s panTro5.chr6              29082572 3 + 175400573 AAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29316963 3 + 173848474 AAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5117115 3 +   6154872 AAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29299272 3 + 172585720 AAA
i rheMac8.chr4             C 0 I 336
s macFas5.chr4              28949094 3 - 170955103 AAA
i macFas5.chr4             C 0 I 11265
s macNem1.NW_012011356v1     1931218 3 -   2996164 AAA
i macNem1.NW_012011356v1   C 0 I 328
s chlSab2.chr17             28262701 3 -  71996105 AAA
i chlSab2.chr17            C 0 I 428
s manLeu1.NW_012104165v1     1935238 3 +   2316924 AAA
i manLeu1.NW_012104165v1   I 323 C 0
s colAng1.NW_012115566v1     1808122 3 -   3067355 aaa
i colAng1.NW_012115566v1   I 11 C 0
s calJac3.chr4             171349089 3 - 171630274 aaa
i calJac3.chr4             I 11 C 0
s saiBol1.JH378348            182233 3 -    375362 AAA
i saiBol1.JH378348         I 11 C 0
s cebCap1.NW_016108108v1      173671 3 -    373274 AAA
i cebCap1.NW_016108108v1   I 11 C 0
e canFam3.chr35             25859383 0 +  26524999 C
e otoGar3.GL873742           1492918 585 -   2232465 I
e aotNan1.NW_018494050v1      119358 301 -    285216 I
e cerAty1.NW_012001495v1     1808192 1343 -   2157725 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=14992.000000
s hg38.chr6_GL000254v2_alt    102425 5 +   4827813 AAGAA
s panTro5.chr6              29082575 5 + 175400573 AAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29316966 5 + 173848474 AAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5117118 5 +   6154872 AAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s manLeu1.NW_012104165v1     1935241 5 +   2316924 AAGAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1808125 5 -   3067355 aagaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171349092 5 - 171630274 aagaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            182236 5 -    375362 AAGAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      173674 5 -    373274 AAGAA
i cebCap1.NW_016108108v1   C 0 C 0
e canFam3.chr35             25859383 0 +  26524999 C
e otoGar3.GL873742           1492918 585 -   2232465 I
e aotNan1.NW_018494050v1      119358 301 -    285216 I
e chlSab2.chr17             28262704 428 -  71996105 I
e cerAty1.NW_012001495v1     1808192 1343 -   2157725 I
e macNem1.NW_012011356v1     1931221 328 -   2996164 I
e macFas5.chr4              28949097 11265 - 170955103 I
e rheMac8.chr4              29299275 336 + 172585720 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=17682.000000
s hg38.chr6_GL000254v2_alt    102430 5 +   4827813 AATAA
s panTro5.chr6              29082580 5 + 175400573 AATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29316971 5 + 173848474 AATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5117123 5 +   6154872 AATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1     1931549 5 -   2996164 AATGA
i macNem1.NW_012011356v1   I 328 C 0
s manLeu1.NW_012104165v1     1935246 5 +   2316924 AATGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1808130 5 -   3067355 aatga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171349097 5 - 171630274 aatga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            182241 5 -    375362 AATGA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      173679 5 -    373274 AATGA
i cebCap1.NW_016108108v1   C 0 C 0
e canFam3.chr35             25859383 0 +  26524999 C
e otoGar3.GL873742           1492918 585 -   2232465 I
e aotNan1.NW_018494050v1      119358 301 -    285216 I
e chlSab2.chr17             28262704 428 -  71996105 I
e cerAty1.NW_012001495v1     1808192 1343 -   2157725 I
e macFas5.chr4              28949097 11265 - 170955103 I
e rheMac8.chr4              29299275 336 + 172585720 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=21505.000000
s hg38.chr6_GL000254v2_alt    102435 4 +   4827813 Aggc
s panTro5.chr6              29082585 4 + 175400573 Aggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29316976 4 + 173848474 Aggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5117128 4 +   6154872 Aggc
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1     1931554 4 -   2996164 Aggc
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1935251 4 +   2316924 Aggc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1808135 4 -   3067355 aggc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171349102 4 - 171630274 aggc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            182246 4 -    375362 Aggc
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      173684 4 -    373274 Aggc
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      119659 4 -    285216 Aggc
i aotNan1.NW_018494050v1   I 301 C 0
e canFam3.chr35             25859383 0 +  26524999 C
e otoGar3.GL873742           1492918 585 -   2232465 I
e chlSab2.chr17             28262704 428 -  71996105 I
e cerAty1.NW_012001495v1     1808192 1343 -   2157725 I
e macFas5.chr4              28949097 11265 - 170955103 I
e rheMac8.chr4              29299275 336 + 172585720 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=555117.000000
s hg38.chr6_GL000254v2_alt    102439 126 +   4827813 cgggagtggtggctcatgcctgtaatcccagcactttg------cga-ggcgggcggatcatgaggtcaggagttcgagaccagcctggccaatatggtgaaa-ccccgtccctaaaaaaaatat-aaaaaatta
s panTro5.chr6              29082589 126 + 175400573 cgggagtggtggctcatgcctgtaatcccagcactttg------cga-ggcgggcggatcatgaggtcaggagttcgagaccagcctggccaatatggtgaaa-ccccgtccctaaaaaaaatat-aaaaaatta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29316980 125 + 173848474 cgggagtggtggctcatgcctgtaatcccagcactttg------cga-ggcgggcggatcatgaggtcaggagttcgagaccagcctggccaatatggtgaaa-ccccgtccct-aaaaaaatat-aaaaaatta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5117132 125 +   6154872 cgggcgtggtggctcatgcctgtaat-ccagcactttg------cga-ggcgggcggatcatgaggtcaggagttcgagaccagcctggccaatatggtgaaa-ccccgtccctaaaaaaaatat-aaaaaatta
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29299611 123 + 172585720 cgggcgtggtggctcatg-ctgtaatcccagcactttg------tgaggacaagcagatcatgaggtcaggagttcgagaccaacctggcaaatatggtgaaa-ccccgtcct--ataaaaatat--aaaaatta
i rheMac8.chr4             I 336 C 0
s macNem1.NW_012011356v1     1931558 127 -   2996164 cgggcgtggtggctcatgcctgtaatcccagcactttg------tga-gacaagcaaatcatgaggtcaggagttcgagaccaacctggccaatatggtgaaacccccgtccctactaaaaatat-aaaaaatta
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1935255 126 +   2316924 cgggcgtggtggctcatgcctgtaatcccagcactttg------tga-gacaagcagatcatgaggtcaggagttcgagaccaacctggccaatatggcgaaa-ccccgtccctactaaaaatat-aaaaaatta
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1808139 126 -   3067355 cgggcgtggtggctcatgaatgtaatcccagcactttg------cga-gacaagcagatcatgaggtcaggagttcgagaccaacctggccaatatggtgaaa-ccccgtccctactaaaaatat-aaaaaatta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171349106 133 - 171630274 cgggcacagtggcccacgcctgcaatcacaacactttaggaggccaa-ggcgggtggatcatgaggtcaggagtttgagaccagcctggcaaatatggtgaaa-ccccgtctctactaaaactacaaaaaaatta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            182250 133 -    375362 caggcacggtggctcacgcctgtaatcccaacactttaggaggccaa-ggcggggggatcacaaggtcaggagtttgagaccggtctggcaaatatggtgaaa-ccccgtctctattaagaatacaaaaaaatta
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      173688 133 -    373274 cgggcatggtggctcacgcctgtaatcccagcactttaggaggccga-ggggggcggattatgaggtcaggagttcgagaccagcctggcaaatatggtgaaa-ctccgtctctactaaaaatacaaaaaaatta
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      119663 132 -    285216 cgggagcggtggctcacgcctgtaatcccagcactttgggaggccga-ggcaggtggatcacgaggtcaagagatcgagaccatcctggtcaacaaggtgaaa-ccccgtctctactaaaaatac-aaaaaatta
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25859383  20 +  26524999 --------------------------------------------------------------------------------------------------------CAACATTT----------TAT-TAAAAATTA
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1492918 585 -   2232465 I
e chlSab2.chr17             28262704 428 -  71996105 I
e cerAty1.NW_012001495v1     1808192 1343 -   2157725 I
e macFas5.chr4              28949097 11265 - 170955103 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=278277.000000
s hg38.chr6_GL000254v2_alt    102565 59 +   4827813 gccgg-gcgcggtggcgcgcgcttgttgtcccagttactc-gggatgctgaggc-aggagaa
s panTro5.chr6              29082715 59 + 175400573 gccgg-gcgcggtggcgcgcgcttgttgtcccagttactc-gggatgctgaggc-aggagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29317105 59 + 173848474 gccgg-gcgcggtggcgcgcgcttgttgtcccagttactc-gggatgctgaggc-aggagaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5117257 59 +   6154872 gccgg-gcgcggtggcgcgcgcttgttgtcccagttactc-gggatgctgaggc-aggagaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29299734 59 + 172585720 gccggcgcgctgtggcgcgcgcctgttgt--cagttactc-ggaatgctgaggcaaggagaa
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     1931685 60 -   2996164 gccgg-gctctgtggcgcgcgcctgttgtcccagttactcgggaatgctgaggc-aggagaa
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1935381 60 +   2316924 gccgg-gcgctgtggcgcgcgcctgttgtcccagttactcgggaatgctgaggc-aggagaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1808265 59 -   3067355 gccgg-gcgcggtggcgcgcgcctgttgtcccagttactt-gggatgctgaggc-aggagaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171349239 59 - 171630274 gttgg-gcgtggtggtgcacccctgttgtcccagttactc-gggagactgaggc-aggagaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            182383 59 -    375362 gtcgg-gcgcggtggtgcatccatgttgtcccagttactt-gggaaattgagat-aggagaa
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      173821 59 -    373274 gtggg-gtgctgtggtacacccctgttgtcccagttactt-gggaggctgaggc-aggagaa
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      119795 59 -    285216 gctgg-gcacggtggcgcgtgcttgtaatcccagctactg-aggaggctgaggc-aggagaa
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25859403  0 +  26524999 C
e otoGar3.GL873742           1492918 585 -   2232465 I
e chlSab2.chr17             28262704 428 -  71996105 I
e cerAty1.NW_012001495v1     1808192 1343 -   2157725 I
e macFas5.chr4              28949097 11265 - 170955103 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=156304.000000
s hg38.chr6_GL000254v2_alt    102624 27 +   4827813 tcgcttgaacccgggaggcggaggttg
s panTro5.chr6              29082774 27 + 175400573 tcgcttgaacccgggaggcggagattg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29317164 27 + 173848474 tcgcttgaacccgggaggcggaggttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5117316 27 +   6154872 tcgcttgaacccgggaggcggaggttg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29299793 25 + 172585720 tcgcttgaacc-gggaggc-gaggttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28960362 27 - 170955103 tcgcttgaaccggggaggcggaggttg
i macFas5.chr4             I 11265 C 0
s macNem1.NW_012011356v1     1931745 27 -   2996164 tcgcttgaaccggggaggcggaggttg
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1935441 27 +   2316924 tcgcttgaaccggggaggcggaggttg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1808324 27 -   3067355 tcgcttgaaccggggaggcggaggttg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171349298 27 - 171630274 tcgcttgaacccgggaggcgtaggttg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            182442 27 -    375362 tcgcttgaacccggaaaacgtaggctg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      173880 26 -    373274 tcacttgaa-ccgggagacgtaggttg
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      119854 27 -    285216 ttgcctgaacccaggaggcggaggttg
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25859403  0 +  26524999 C
e otoGar3.GL873742           1492918 585 -   2232465 I
e chlSab2.chr17             28262704 428 -  71996105 I
e cerAty1.NW_012001495v1     1808192 1343 -   2157725 I
e nomLeu3.chr1a             74119446 399 + 122973662 I

a score=352231.000000
s hg38.chr6_GL000254v2_alt    102651 75 +   4827813 cagtgagtcgagatcgcgc---cactgcactccaacctggacgac-agagtgagactccgtctc---------------aag-------aaaaaaaaaaaa--
s panTro5.chr6              29082801 76 + 175400573 cagtgagccgagatcgcgc---cactgcactccaacctggacgac-agagtgacactccatctc---------------aag------aaaaaaaaaaaaa--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29317191 73 + 173848474 cagtgagccgagatcgcgc---cactgcactccaacctggacgac-agagtgacactccatctc---------------aag---------aaaaaaaaaa--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5117343 75 +   6154872 cagtgagccgagatcgcgc---cactgcactccaacctggacgac-agagtgagactccgtctc---------------aag-------aaaaaaaaaaaa--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74119845 82 + 122973662 cagtgatccgagattgcgc---cactgcactccaacctggacgac-agagtgagactccgtctc---------------aaaaaaaaaaaaaaagaaaaaa--
i nomLeu3.chr1a            I 399 C 0
s rheMac8.chr4              29299818 93 + 172585720 cagtgagccgagagcgcgcccacggggcactccaacctggacgac-agagcgagactctgtctcaaaaaaaaaaaaaaaaaa-------gaaagaaagaaa--
i rheMac8.chr4             C 0 I 7
s macFas5.chr4              28960389 87 - 170955103 cagtgagccgagagcgcgc---cacggcactccaacctggacgac-agagcgagactctgtctc---aaaacaaaaaaaaaa-------aaaagaaagaaa--
i macFas5.chr4             C 0 I 7
s macNem1.NW_012011356v1     1931772 81 -   2996164 cagtgagccgagagcgcgc---cacggcactccaacctggacgac-agagcgagactctgtctc---------aaaaaaaaa-------aaaagaaagaaa--
i macNem1.NW_012011356v1   C 0 I 7
s manLeu1.NW_012104165v1     1935468 75 +   2316924 cagtgagccgagagcgcgc---cacggcactccaacctggacgac-agagcgagactctgtctc---------------aaa-------aacaaaaaaaaa--
i manLeu1.NW_012104165v1   C 0 I 7
s colAng1.NW_012115566v1     1808351 75 -   3067355 cagtgagccgagagcgcgc---cacggcactcgaacctggacgac-agagcgagactctgtctc---------------aaa-------aaaaaaaaaaaa--
i colAng1.NW_012115566v1   C 0 I 311
s calJac3.chr4             171349325 68 - 171630274 cagtgagccgagatcgg-------------------ctgggtgac-agagtgagactccgtc--------aaaaaaaaaaaa-------aaaaaaaaaaaagg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            182469 73 -    375362 tagtgagccgagatcgg-------------------ctgggtgac-agaatgagactctgtcta---aagaaaaaaaaaaaa-------aaaaaggaaaaaaG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      173906 73 -    373274 cagtgagccaagatcgg-------------------ctgggtgac-agagtgagactccgtcta---aaaaaaaaagaaaaa-------aaaaaaaagaaaaG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      119881 77 -    285216 cagtgagccgagatcgtgc---cattgcactccagcctgggtaacaagagcgaaactccgtctc---c-------------a-------aaaaaaaaaaaaag
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25859403  0 +  26524999 C
e otoGar3.GL873742           1492918 585 -   2232465 I
e chlSab2.chr17             28262704 428 -  71996105 I
e cerAty1.NW_012001495v1     1808192 1343 -   2157725 I

a score=43472.000000
s hg38.chr6_GL000254v2_alt    102726 6 +   4827813 gaaaat
s panTro5.chr6              29082877 6 + 175400573 gaaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29317264 6 + 173848474 gaaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5117418 6 +   6154872 gaaaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74119927 6 + 122973662 gaaaaT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29299918 6 + 172585720 GAAAAT
i rheMac8.chr4             I 7 C 0
s macFas5.chr4              28960483 6 - 170955103 GAAAAT
i macFas5.chr4             I 7 C 0
s macNem1.NW_012011356v1     1931860 6 -   2996164 GAAAAT
i macNem1.NW_012011356v1   I 7 C 0
s manLeu1.NW_012104165v1     1935550 6 +   2316924 gaaaaT
i manLeu1.NW_012104165v1   I 7 C 0
s colAng1.NW_012115566v1     1808737 6 -   3067355 gaaaat
i colAng1.NW_012115566v1   I 311 C 0
s calJac3.chr4             171349393 6 - 171630274 aaaaag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            182542 6 -    375362 GAACAT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      173979 6 -    373274 GAAAAT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      119958 6 -    285216 gaaaat
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25859403 0 +  26524999 C
e otoGar3.GL873742           1492918 585 -   2232465 I
e chlSab2.chr17             28262704 428 -  71996105 I
e cerAty1.NW_012001495v1     1808192 1343 -   2157725 I

a score=869891.000000
s hg38.chr6_GL000254v2_alt    102732 129 +   4827813 gaaaaCTTCACATCATATTCAATCATGAATAGTGATTC-AAAAAATATTACTAAGTACAATATTGCCAGAGAGGCAAGGAACAGAGTCAATGATTAGAACACAAAAATGATTCAGCAATAGAAATATAT-A
s panTro5.chr6              29082883 129 + 175400573 gaaaaCTTCACATCATATTCAATCATGAATAGTGATTC-AAAAAATATTAATAAGTACAATATTGCCAGAGAGGCAAGGAACAGAGTCAATGATTAGAACACAAAAATGATTCAGCAATATAAATATAT-A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29317270 129 + 173848474 gaaaaCTTCACATCATATTCAATCATGAATAGTAATTC-AAAAAATATTAATAAGTACAATATTGCCAGAGAGGCAAGGAACAGAGTCAATGATTAGAACACAAAAATGATTCAGCAATATAAATATAT-A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5117424 129 +   6154872 gaaaaCTTCACATCATATTCGATCATGAATAGTGATTC-AAAAAATATTAATAAGTACAATATTGCCAGAGAGGCAAGGAACAGAGTCAATGATTAGAACACAAAAATGATTCAGCAATAGAAATATAT-A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74119933 129 + 122973662 GAAAACTTCACATCATATTCAATCATGAATAGTGATTC-AAAAAATATTAATAAATACAATATTACCAGAGAGGGAAGGAACAGAGTCAACGAATAGAACACAAAAATGATTCAGCAATAGGAATATAT-A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29299924 129 + 172585720 GAAAACGTTACATAATATTCAATCATGAATAGTGATTCAAAAAAATATTAATAAATACAATATTACCAGAGAGAGAGGGAACAGAGTCAATGATAAGAACACAAAAATGATGCAGCAATAGAAACAGAT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28960489 129 - 170955103 GAAAACGTTACATAATATTCAATCATGAATAGTGATTCAAAAAAATATTAATAAATACAATATTACCAGAGAGAGAGGGAACAGAGTCAATGATAAGAACACAAAAATGATGCAGCAATAGAAACAGAT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1931866 128 -   2996164 GAAAACGTTACATAATATTCAATCATGAATAGTGATTC-AAAAAATATTAATAAATACAATATTACCAGAGAGAGAGGGAACAGAGTCAATGATAAGAACACAAAAATGATGCAGCAGTAGAAACAGAT--
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1935556 125 +   2316924 GAAAACGTTACATCatattgaatcatgaatagtgattc-aaaaattattaataaATACAATATTACCAGAGAGAGAGGGAACAGAGCCA---GCAAGAACACAAAAATGATGCAGCAATAGAAACAGAT--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1808743 129 -   3067355 gaaaaCGTCACATCATATTCAATCATGAATAGTGATTC-AAAAAATATTAATAAATACAATATTACCAGAGAGAGAAGGAACAGAGTCAATGATAAGAACACAAAAATGATTCAGCAATAGAAATAGATT-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171349399 121 - 171630274 gaaaattttatatcatattcaatcatgaatagtgattc-gaaaaatat---taaatactatattatcagaGAGGGAAGA---ATAGTCAATAATTAGAACACAAAACGTATTCAGCAATAGAAATAGA---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            182548 127 -    375362 GAAAACTATATATCATATTCAATCATGAATAGTGATTC-ACAAAATATTAATAAATACCATATCACCAGAGAAGGAAGAAACAGAGTCAATAATTAGAACACAAAAATGATTCAGCAATAGAAATAGG---
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      173985 127 -    373274 GAAAATTATATATTATATTCAATCAAAAACAGTGATTC-AAAAAATATTAATAAATACCATATTACCAGAGAGGGAAGAAACAGAGTCAATAATTAGAACACAAAAATTATTCAGCAATAGAAATAGG---
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      119964 124 -    285216 gaaaaCTTTATATCATATTCAATCATGAATAGTGATT--AAAAAGTATTAATAAATACTATATTATCAGAGAGGCAAGAA--ATAGTCAATAATTAGAACACAAAAATTATTCAGCAATAGAAATAGG---
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25859403 124 +  26524999 AGAAACTTCACACCAAATTCAACTATGTATGTTGATTGAAAAAAAAATTCATAAATACTATATTACCAT---GGCAGAGAACAAGGTCAATTATTAGAACACAAAA-TGGTTCAACAATAGAAGTACA---
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1492918 585 -   2232465 I
e chlSab2.chr17             28262704 428 -  71996105 I
e cerAty1.NW_012001495v1     1808192 1343 -   2157725 I

a score=110156.000000
s hg38.chr6_GL000254v2_alt    102861 15 +   4827813 TTTTTTGCAATTA-TG
s panTro5.chr6              29083012 15 + 175400573 TTTTTTGCAATTA-TG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29317399 15 + 173848474 TTTTTTGCAATTA-TG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5117553 15 +   6154872 TTTTTTGCAATTA-TG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74120062 15 + 122973662 TTTTTTGCAATTA-TG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29300053 15 + 172585720 TATTTTGCAATTA-TG
i rheMac8.chr4             C 0 I 2
s macFas5.chr4              28960618 15 - 170955103 TATTTTGCAATTA-TG
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1     1931994 15 -   2996164 TATTTTGCAATTA-TG
i macNem1.NW_012011356v1   C 0 I 2
s chlSab2.chr17             28263132 13 -  71996105 TTTTTTGCAAT---TG
i chlSab2.chr17            I 428 I 2
s manLeu1.NW_012104165v1     1935681 15 +   2316924 TATTTTGCAATTA-TG
i manLeu1.NW_012104165v1   C 0 I 2
s colAng1.NW_012115566v1     1808872 15 -   3067355 TTTTTTGCAATTA-TG
i colAng1.NW_012115566v1   C 0 I 2
s calJac3.chr4             171349520 15 - 171630274 -TTTTTGCAATTGTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            182675 14 -    375362 -TTTTTGCAATTA-TT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      174112 15 -    373274 -TTTTTGCAATTATTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      120088 14 -    285216 -TTTTTGCAATGA-TT
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25859527 14 +  26524999 -TCTTTGCAATTA-TT
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1492918 585 -   2232465 I
e cerAty1.NW_012001495v1     1808192 1343 -   2157725 I

a score=3486853.000000
s hg38.chr6_GL000254v2_alt    102876 396 +   4827813 TTTTC--TGTTAGAATAGAAAAT--T-GGGGGAAAAAACACAGCCGCGTATTTATACTATACACCCTTACTCCATCCA--CGTCAAAGCACGTCATATtgcttctta------aatg-tgcaaaagaatctcttgtggatcttgttaaattgctacttctggttcagtacgtctgaggtgaagctgagatttcgctcttc-taacaagctctccggtgCCACCAACTCTTGTGTG--------GACCAAGAGTCTG-AAAGATATCCTTACGATAGAGGGCGCACCTGTCTTAGGTAAAATTACTTCTGTAA-------CGTCATCTA----AGGGAAGTCAAATTATCCGGCAGGAGT----GAAGACAGAATAAAACTGGAAATCAGTCCGTGAACTTTGAGATCTTCAGCAGAGCATGCTTCCCAGTGGAGC
s panTro5.chr6              29083027 396 + 175400573 TTTTC--TGTTAGAATAGAAAAT--T-GGGGGAAAAAACACAGCCGCGTATTTATACTATACACCCTTACTCCATCCA--CGTCAAAGCACGTCATATtgcttctta------aatg-tgcgaaagaatctcttgtggatcttgttaaattgctacttctggttcagtacgtctgaggtgaagctgagatttcgctcttc-taacaagctctccggtgCCACCAACTCTTGTGTG--------GACCAAGAGTCTG-AAAAATATCCTTACGATAGAGGGCGCACCTGTCTTAGGTAAAATTACTTCTGTAA-------CGTCATCTA----AGGGAAGTCAAATTATCCGGCAGGAGT----GAAGACAGAATAAAACTGGAAATCAGTCCGTGAACTTTGAGATCTTCAGCAGAGCATGCTTCCCAATGGAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29317414 396 + 173848474 TTTTC--TGTTAGAATAGAAAAT--T-GGGGGAAAAAACACAGCCGCGTATTTATACTATACACCCTTACTCCATCCA--CGTCAAAGCACGTCATATtgcttctta------aatg-tgcgaaagaatctcttgtggatcttgttaaattgctacttctggttcagtacgtctgaggtgaagctgagatttcgctcttc-taacaagctctccggtgCCACCAACTCTTGTGTG--------GACCAAGAGTCTG-AAAAATATCCTTACGATAGAGGGCGCACCTGTCTTAGGTAAAATTACTTCTGTAA-------CGTCATCTA----AGGGAAGTCAAATTATCCGGCAGGAGT----GAAGACAGAATAAAACTGGAAATCAGTCCGTGAACTTTGAGATCTTCAGCAGAGCATGCTTCCCAATGGAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5117568 399 +   6154872 TTTTCTATGTTAGAATAGAAAAT--T-GGGGGGAAAAACACAGCCGTGTATTTATACTATACACCCTTACTCCATCCA--CGTCAAAGCACGTCATATtgcttctta------aatg-tgcaaaagaatctcttgtggatcttgttaaattgctacttctggttcagtacgtctgaggtgaagctgagatttcgctcttc-taacaagctctccagtgCCACCAACTCTTGTGTG--------GACCAAGAGTCTGAAAAAATATCCTTACGATAGAGGGCGCACCTGTCTTAGGTAAAATTACTTCTGTAA-------CGTCATCTA----AGGGAAGTCAAATTATCCGGCAGGAGT----GAAGACAGAATAAAACTGGAAATCAGTCCGTGAACTTTGAGATCTTCAGCAGAGCATGCTTCCCAATGGAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74120077 396 + 122973662 TTTTCTATATTAGAATATAAAAT--T-GGGGGAAAAAACACAGCCGTGTATTTATACTATACACCTTTAC----TCCA--CGTCAAAGCACGTCATaatgcttctta------aatgttgctaaagattcttttgtggttcctgttaaactgctgcttctggttcagtacatctgaggtgaagctgagatttcgctcttcttaacaagctctccggtACCACCAACTCTTGTGTG--------GACCAAGAGTCTG-AAAAATATCCTTACGATAGAGGGCGCACCTGTCTTAGGTAAAATTACTTCTGTAA-------CGTCATCTA----AGGGAAGTCAAATTATCCGGCAAGAGT----GAAGACAGAATAAAACTGGAAATCAATCCGTGAAGTTTGAGATCTTCAGCAGAGCATGCTTCCCAATGGAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29300070 375 + 172585720 --TTCTATGTTAGAGTAGAAAAT--T-GGGGAAAAAAATACAGCCGTGTATTTATACCATACACCCTTAC----TCCA--CGTCAAAGCACGTCATaatgcttctta------aata-tgcaaaagaatctcttgtgaatcctgttaaactgctgcttctggttcaatacgtctgaggtgaagctgagatttcgctcttt-caacaag-----------------ctcTTGTGTG--------GACCAAGAGTCTG-AAAAATATCTTTACGATAGAGGGCGCCCCTGTCTTAGGTAAAATTACTTCTGTAA-------CGTCATCTA----AGGGAAGTCAAATTATCCGGCAAGAGT----AAAGACAGAATAAAACTGGAAATCAATGCGTAAACTTTGAGATCTTCAACAGAGCATGCTTCCCAATGGAGC
i rheMac8.chr4             I 2 C 0
s macFas5.chr4              28960635 375 - 170955103 --TTCTATGTTAGAGTAGAAAAT--T-GGGGAAAAAAATACAGCCGTGTATTTATACCATACACCCTTAC----TCCA--CGTCAAAGCACGTCATAATGCTCctta------aata-tgcaaaagaatctcttgtgaatcctgttaaactgctgcttctggttcaatacgtctgaggtgaagctgagatttcgctcttc-caacaag-----------------ctcTTGTGTG--------GACCAAGAGTCTG-AAAAATATCTTTACGATAGAGGGCGCCCCTGTCTTAGGTAAAATTACTTCTGTAA-------CGTCATCTA----AGGGAAGTCAAATTATCCGGCAAGAGT----AAAGACAGAATAAAACTGGAAATCAATGCGTAAACTTTGAGATCTTCAACAGAGCATGCTTCCCAATGGAGC
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1     1932011 375 -   2996164 --TTCTATGTTAGAGTAGAAAAT--T-GGGGAAAAAAATACAGCCGTGTATTTATACCATACACCCTTAC----TCCA--CGTCAAAGCACGTCATaatgcttctta------aata-tgcaaaagaatctcttgtgaatcctgttaaactgctgcttctggttcaatacgtctgaggtgaagctgagatttcgctcttc-caacaag-----------------ctcTTGTGTG--------GACCAAGAGGCTG-AAAAATATCTTTACGATAGAGGGCGCCCCTGTCTTAGGTAAAATTACTTCTGTAA-------CGTCATCTA----AGGGAAGTCAAATTATCCGGCAAGAGT----AAAGACAGAATAAAACTGGAAATCAATGCGTAAACTTTGAGATCTTCAACAGAGCATGCTTCCCAATGGAGC
i macNem1.NW_012011356v1   I 2 C 0
s cerAty1.NW_012001495v1     1809535 375 -   2157725 --TTTTATGTTAGAGTAGAAAAT--T-GGGGAAAAAAATACAGCCGTGTATTTATACCATACACCCTTAC----TCCA--CGTCAAAGCACGTCATaatgcttctta------aata-tgcaaaagaatctcttgtggatcctgttaaactgctgcttctgattcaatacgtctgaggtgaagctgagatttcgctcttc-caacaag-----------------ctcTTGTGTG--------GACCAAGAGTCTG-AAAAATATCTTTACGATAGAGGGCGCCCCTGTCTTAGGTAAAATTACTCCTGTAA-------CGTCATCTA----AGGGAAGTCAAATTATCCGGCAAGGGT----AAAGACAGAATAAAACTGGAAATCAATGCGTAAACTTTGAGCTCTTCAGCAGAGCATGCTTCTCAATGGAGC
i cerAty1.NW_012001495v1   I 1343 C 0
s chlSab2.chr17             28263147 375 -  71996105 --TCCTATGTTAGAGTAGAAAAT--T-GGGGAAAAAAATACAGCTGTGTATTTATACCATACACCCTTAC----TCCA--CGTCAAAGCACGTCATAATGCTGctta------aata-tgcaaaagaatctcttgtggatcctgttaaactgctacttctggttcaatacgtctgaggtgaagctgagatttcgctcttc-taacaag-----------------ctcTTGTGTG--------GACCAAGAGTCTG-AAAAATATCTTTACGATAGAGGGCGCCCCTGTCTTAGGTAAAATTACTTCTGTAA-------CGTCATCTA----AGGGAAGTCAAATTATCCGGCAGGAGT----AAAGACAGAATAAAACTGGAAATCAATGCTTAAACTTTGAGATCTTCAGCAGAGCATGCTTCCCAATGGAGC
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012104165v1     1935698 375 +   2316924 --TTCTATGTTAGAGTAGAAAAT--T-GGGGAAAAAAATACAGCCGTGTATTTATACCATACACCCTTAC----TCCA--CGTCAAAGCACGTCATaatgcttctta------aata-tgcaaaagaatctcttgtggatcctgttaaactgctgcttctggttcaatacgtctgaggtgaagctgagatttcgctcttc-caacaag-----------------ctcTTGTGTG--------GACCAAGAGTCTG-AAAAATATCTTTACGATAGAGGGCGCCCCTGTCTTAGGTAAAATTACTTCTGTAA-------CGTCATCTA----AGGGAAGTCAAATTATCCGGCAAGAGT----AAAGACAGAATAAAACTGGAAATCAATGCGTAAACTTTGAGATCTTCAGCAGAGCATGCTTCCCAATGGAGC
i manLeu1.NW_012104165v1   I 2 C 0
s colAng1.NW_012115566v1     1808889 393 -   3067355 --TTCTGTGTTAGAATAGAAAAT--TGGGGGAAAAAAATACAGCCGTGTATTGATACCATACACCCTTAC----TCCA--CGTCAAAGCACGTCATaatgcttctta------aata-tgcaaaagaatctcttgtggatcctgttaaactgctgcttctggttcaatacgtctgaggtgaagctgagatttcgctcttc-taccaagctctccggtgCCACCAACTCTTGTGTG--------GACCAAGAGTCTG-AAAAATATCTTTACGATAGAGGGCGCCCCTGTCTTAGGTAAAATTACTTCTGTAA-------CGTCATCTA----AGGGAAGTCAAATTATCCGGCAAGAGT----AAAGACAGAATAAAACTGGAAATCAATGCGTGAACTTTGAGATCTTCAGCAGAGCATGCTTCCCAGTGGAGC
i colAng1.NW_012115566v1   I 2 C 0
s calJac3.chr4             171349535 385 - 171630274 TTTTCTATGTTAGAACAGAAAAT--T-GGGGGGAA--ATACAGCCATGCATTTATACAGTATACCCTTAA----CGCA--CGTCAAGTCACGTCATaatgcttctta------aatg-tgcaaaagaatctcttgt-gcccctgaaaaactgctgcttctggttca-taggt-----------ctgaggtttcgctcttc-taacaggctcgcaggtgCCGGCAACTCCGGGGTTTCAGGTCCAACCGAGAGCCTG-AAAAGCATCTCCA-GATAGAGGGCGCGCCTGTCTTAGGTAAAATT-CCTCTACAA-------CGTCATCTG----AGGGAAGTGAAATTCTCCGGCCAGAGG----GAAGACGGAACAAAGCTGGAAATCAATCCGTGAACGTCGACATCTTCAGCAGCGCCTGCTTCCCGGTGAAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            182689 403 -    375362 TTTTCTATGTTAGAATAGAAAATTGT-GGGGGAAA--ATACAG-CATGTATTTATACAGTATACCCTTAA----CGCA--CGTCAAGTCACGTCATaatgcttctta------aatg-tgcaaaagaatctctcgtggatcctgttaaactgctgcttctggttcc-taggtcggaggtgaggccgaggtttcgctcttc-taacaggctcgcagA-GCCGGCAACTCTGGGGTTTCAGGTCCAACCAAGAGCTTG-AAAAGCATCTCTACGATAGACGGCGCACCTGTCTTAGGTAAAATTACTTTTGCAG-------CGTCATCTA----AGGGAAGTGAAATTCTCCGGCCAGAGAGAGTGAAGACAGAACAAAGCTGGAAATCAATCCGAGGACGCTGACATCTTCAGCAGCGCCTGCTTCCCAGTGAAGC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      174127 390 -    373274 TTTTCTATGTTAGAACAGAAAAT--T-GGGGGAAAAGATACAGCCATGTATTTATACAGTATACCCTTAA----CGCA--CATCAAGTCACGGCATaatgcttctta------aatg-tgcaaaagaatctcttgtggatcctgttaaactgctgcttctggttca-taggtctgaggtgaagccgaggtttcgctcttt-caacgggctcgcaggtgCCGGCAACTCTGGGGTTTCAGGTCCAACCAAGAGCCTG-AAAAGCATCTCTACGATAGAGGGCGCACCTGTCTTAGGTAAAATTACTTCTGCAC-------CATCATCTC----AGGGAAGTGAAATTCCCCGGCCAGAGAAAGTGAAGACAGAACAAAGCTGGAAATCAATCCGTGAACGCTGACAT---------------CTTCCCAGTGAAGC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      120102 399 -    285216 TTTTCTATGTTAGAATAGAAAAT--T-GGGGGAAAA-ATACAGCCATGTATTTATACAGTATACCCTTAA----CGCA--CGTCAAGTCACGTCATaatgcttctta------aatg-tgcgaaagaacctcttgtggatcctgttaaactgctgcttctggttca-taggtctaaggtgaagctgaggtttcgctcttc-taacaggctcgcaggtgCCGGCAACTCTGGGGTTTCAGGTCCAACCAAGAGACTG-AAAAGTATCTCTA-GATAGAGGGCGCACCTGTCTTAGGTAAAATTAGTTCTGCAA-------CGTCATCTA----AGGGAAGTGAAATTCTCCGGCCAGAGT----GAAGACAGAACAAAGCTGGAAATCAATCCGTGAACGTTGACATCTTCAGCAGCGCCTGCTTCCCAATGAAGC
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25859541 355 +  26524999 TTCCCTACATTGAAATAGGAAAT--T-GGGGAAAAAA--------------TTAAAATACAGAGCCCTGC----CCCAGCCCCCAAACc-------agtgcttttcaaaggttaacg-tgcaaaggaatcacttggggatccagg-----------ttctagttcagaaggtccggagtggaggggaca-cccgcatttc-cacccagctctcagatgccacccactgttg------------gtccagggatcgc-g-----------ctGATGGAGGGCGCACCAGCCTTGGGTCGAATGACCTTTGCAAGTCACCGCAGCATCTAGTTCATGGCAGTC-----CTCGGTTAGGATC----TAGGACAGAACCAACCTGGACATCAGT--GTGACTGTTGGGATCCTGGGCAA---ACGCCTCCCGGCGGCGC
i canFam3.chr35            C 0 I 7017
e otoGar3.GL873742           1492918 585 -   2232465 I

a score=1269068.000000
s hg38.chr6_GL000254v2_alt    103272 134 +   4827813 TATTTCGGCAGAAGTGTGACGCCTCTACATTCATTGATGAAAATAACTTTCTCAATTTCCCAGTTTGGAA---GGCTTTGCGTTTGTCAGGGCTCAGCCTGCGATGGATCATGGCTAAACAAGGACCAGAAAAAAAA
s panTro5.chr6              29083423 134 + 175400573 TATTTCGGCAGAAGTGTGACGCCTCTACATTCATTGATGAAAATAACTTTCTCAATTTCCCAGTTTGGAA---GGCTTTGCGTTTCTCAGGGCTCAGCCTGCGATGGATCATGGCTAAACAAGGACCAGAAAAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29317810 134 + 173848474 TATTTCGGCAGAAGTGTGACGCCTCTACATTCATTGATGAAAATAACTTTCTCAATTTCCCAGTTTGGAA---GGCTTTGCGTTTCTCAGGGCTCAGCCTGCGATGGATCATGGCTAAACAAGGACCAGAAAAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5117967 134 +   6154872 TATTTCGGCAGAAGTGTGACGCCTCTACATTCATTGATGAAAATAACTTTCTCAATTTCCCAATTTGGAA---GGCTTTGCGTTTCTCAGGGCTCAGCCTGCGATGGATCATGGCTAAACAAGGACCAGAAAAAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74120473 134 + 122973662 TATTTCGGCGGAAGTGTGACGCCTCTACATTCATTGATGAAAATAACTTTCCCAATTTCCCAGTTTGGAA---GGCTCTGTGTTTCTCAGGGCTCAGCCTGCAATGGATCATGGCTAAACAAGGACCAGAAAagaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29300445 134 + 172585720 TATTTCGGCAGAAGTGTGACGCCTCTACATTCCCTGATGAAAATAACTTTCTCAATTTCCCAGTTTGGAA---GGCTCTGCGTTTCTCAGTGCTCAGCCTGCAATGGATCATGGCTATTTAAGGACCAGAAAAGAAA
i rheMac8.chr4             C 0 I 10
s macFas5.chr4              28961010 131 - 170955103 TATTTCGGCAGAAGTGTGACGCCTCTACATTCCCTGATGAAAATAACTTTCTCAATTTCCCAGTTGGGAA---GGCTCTGCGTTTCTCAGTGCTCAGCCTGCAATGGATCATGGCTATTTAAGGACCAGAAAAG---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1932386 134 -   2996164 TATTTCGGCAGAAGTGTGACGCCTCTACATTCCCTGATGAAAATAACTTTCTCAATTTCCCAGTTTGGAA---GGCTCTGCGTTTCTCAGTGCTCAGCCTGCAATGGATCATGGCTATTTAAGGACCAGAAAAGAAA
i macNem1.NW_012011356v1   C 0 I 10
s cerAty1.NW_012001495v1     1809910 134 -   2157725 TATTTCGTCAGAAGTGTGACGCCTCTACATTCCCTGATGAAAATAACTTTCTCAATTTCCCGGTTTGGAA---GGCTCTGCGTTTCTCAGTGCTCAGCCTGCAATGGATCATGGCTATTTAAGGACCAGAAAAGAAA
i cerAty1.NW_012001495v1   C 0 I 10
s chlSab2.chr17             28263522 132 -  71996105 TATTTCGGCAGAAGTGTGACGCCTCTACATTCCCTGATGAAAATAACTTTCTCAATTTCCCAGTTTGGAA---GGCTCTGCGTTTCTCAGTACTCAGCCTGCAATGGATCATGGCTA--CAGGGACCAGAAAAGAAA
i chlSab2.chr17            C 0 I 10
s manLeu1.NW_012104165v1     1936073 134 +   2316924 TATTGCGGCAGAAGTGTGACGCCTCTACATTCCCTGATGAAAATAACTTTCTCAATTTCCCAGTTTGGAA---GGCTCTGCGTTTCTCAGTGCTCAGCCTGCAATGGATCATGGCTATTTAAGGACCAGAAAAGAAA
i manLeu1.NW_012104165v1   C 0 I 10
s colAng1.NW_012115566v1     1809282 134 -   3067355 TATTTCGGCAGAAGTGTGACGCCTCTACATTCCCTGATGAAAATAACTTTCTCAATTTCCCAGTTTGGAA---GGCTCTGCGTTTCTCAGTGCTCAGCATGCAATGGATTATGGCTAAACAAGGACCAGAAAAGAAA
i colAng1.NW_012115566v1   C 0 I 10
s calJac3.chr4             171349920 137 - 171630274 CGTCTCGGAGGAAGTGCGACGCCTCTGCATTCACCGGTGAAAATAACTTTCTCCATTTCCCAGTTAGGAAGCCGGCTCTGAGTTTCTCAGCGCTCAGCCCGCAACGGATCGTGGCTATACAAGGACTGGAAAAGAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            183092 137 -    375362 TGTCTCGGCGGAGCTGTGACGCCTCTGCACTCACTGATGAAAATAACTTTCTCCATTTCCCCGTTTGGAAGCCGGCTCTGAGTTTCTCAGCGCTCAGCCCGCAATGGATCGTGGCTAACCAAGGACTAGAAGAGAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      174517 137 -    373274 TGTCTCGGCGGAGGTGTGACGCCTCTGCATTCACTGATGAAAATAACCCTCTCCATTTCCCAGTTTGGAAGCCGGCTCTGAGTTTCTCAGCGCTCAGCCCGCAATGGATCGTGGCTAAACAGGGACTAGAAAAGAAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      120501 137 -    285216 TGTCTCGGCGGAAGTGTGACGCCTCTGCATTCACTGATGAAAATAACTTTCTCCATTTCCCAGTTTGGAAGCCGGCTCTGAGTTTCTCAGCGCTCAGCCCGAAATGGATCGTGGCTAAACAAGGACTAGAAAAGAAA
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e otoGar3.GL873742           1492918 585 -   2232465 I

a score=13651.000000
s hg38.chr6_GL000254v2_alt    103406 4 +   4827813 TAAA
s panTro5.chr6              29083557 4 + 175400573 TAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29317944 4 + 173848474 TAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5118101 4 +   6154872 TAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74120607 4 + 122973662 taaa
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28961141 3 - 170955103 -AAA
i macFas5.chr4             C 0 C 0
s calJac3.chr4             171350057 4 - 171630274 GAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            183229 4 -    375362 TAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      174654 4 -    373274 TAAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      120638 4 -    285216 TAAA
i aotNan1.NW_018494050v1   C 0 I 6
e canFam3.chr35             25859896 7017 +  26524999 I
e otoGar3.GL873742           1492918 585 -   2232465 I
e colAng1.NW_012115566v1     1809416 10 -   3067355 I
e manLeu1.NW_012104165v1     1936207 10 +   2316924 I
e chlSab2.chr17             28263654 10 -  71996105 I
e cerAty1.NW_012001495v1     1810044 10 -   2157725 I
e macNem1.NW_012011356v1     1932520 10 -   2996164 I
e rheMac8.chr4              29300579 10 + 172585720 I

a score=15316.000000
s hg38.chr6_GL000254v2_alt    103410 5 +   4827813 GGAAA
s panTro5.chr6              29083561 5 + 175400573 GGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29317948 5 + 173848474 GGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5118105 5 +   6154872 GTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74120611 5 + 122973662 ggaaa
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28961144 5 - 170955103 GGAAA
i macFas5.chr4             C 0 C 0
s calJac3.chr4             171350061 5 - 171630274 GGAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            183233 5 -    375362 GGAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      174658 5 -    373274 GGAAA
i cebCap1.NW_016108108v1   C 0 I 135
e canFam3.chr35             25859896 7017 +  26524999 I
e otoGar3.GL873742           1492918 585 -   2232465 I
e aotNan1.NW_018494050v1      120642 6 -    285216 I
e colAng1.NW_012115566v1     1809416 10 -   3067355 I
e manLeu1.NW_012104165v1     1936207 10 +   2316924 I
e chlSab2.chr17             28263654 10 -  71996105 I
e cerAty1.NW_012001495v1     1810044 10 -   2157725 I
e macNem1.NW_012011356v1     1932520 10 -   2996164 I
e rheMac8.chr4              29300579 10 + 172585720 I

a score=4652.000000
s hg38.chr6_GL000254v2_alt    103415 7 +   4827813 ---TCggctg
s panTro5.chr6              29083566 7 + 175400573 ---TCggccg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29317953 7 + 173848474 ---TCggccg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5118110 7 +   6154872 ---TCggccg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74120616 7 + 122973662 ---tcggcca
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28961149 7 - 170955103 ---TTGTCTG
i macFas5.chr4             C 0 C 0
s calJac3.chr4             171350066 7 - 171630274 CTGTCGG---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            183238 7 -    375362 CTGTCGG---
i saiBol1.JH378348         C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e otoGar3.GL873742           1492918 585 -   2232465 I
e aotNan1.NW_018494050v1      120642 6 -    285216 I
e cebCap1.NW_016108108v1      174663 135 -    373274 I
e colAng1.NW_012115566v1     1809416 10 -   3067355 I
e manLeu1.NW_012104165v1     1936207 10 +   2316924 I
e chlSab2.chr17             28263654 10 -  71996105 I
e cerAty1.NW_012001495v1     1810044 10 -   2157725 I
e macNem1.NW_012011356v1     1932520 10 -   2996164 I
e rheMac8.chr4              29300579 10 + 172585720 I

a score=33863.000000
s hg38.chr6_GL000254v2_alt    103422 42 +   4827813 ggagcggtggtggcttactcctgtaatcccagcactttggga
s panTro5.chr6              29083573 42 + 175400573 ggagcggtggtggctcattcctgtaatcccagcactttggga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29317960 42 + 173848474 ggagcggtggtggctcattcctgtaatcccagcactttggga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5118117 42 +   6154872 ggagcggtggtggctcactcctgtaatcccagcactttggga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74120623 39 + 122973662 ggcgc---ggtggctcacgcttgtaatcccagcactttggga
i nomLeu3.chr1a            C 0 M 100
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            183245  0 -    375362 C
e otoGar3.GL873742           1492918 585 -   2232465 I
e aotNan1.NW_018494050v1      120642  6 -    285216 I
e cebCap1.NW_016108108v1      174663 135 -    373274 I
e calJac3.chr4             171350073  0 - 171630274 C
e colAng1.NW_012115566v1     1809416 10 -   3067355 I
e manLeu1.NW_012104165v1     1936207 10 +   2316924 I
e chlSab2.chr17             28263654 10 -  71996105 I
e cerAty1.NW_012001495v1     1810044 10 -   2157725 I
e macNem1.NW_012011356v1     1932520 10 -   2996164 I
e macFas5.chr4              28961156  0 - 170955103 C
e rheMac8.chr4              29300579 10 + 172585720 I

a score=128378.000000
s hg38.chr6_GL000254v2_alt    103464 255 +   4827813 ggccgaggcgggaggatcacgaggtcaggagatcgcgaccatcctggctaacacggtgaaaccctgtctctaccaaaaaaatagaaaaaattagccgggcgtggtgacgggcgcctgtagtcccggctactcgggaggctgaggcagaagaatggcgtaaacccgggaggcggagcttgcagtgagccaagatcgtgccactgggcgacagagcgagagactccgtctc-------aaaaaaaaaaaagtaataaagaaaaT----
s panTro5.chr6              29083615 261 + 175400573 ggccgaggcgggaggatcacgaggtcaggagatcgcgaccatcctggctaacacggtgaaaccctgtctctacc-aaaaaatagaaaaaattagccgggcgtggtgacgggcgcctgtagtcccagctactcgggaggctgaggcagaagaatggcgtaaacccgggaggcggagcttgcagtgagccaagatcgtgccactgggcgacagagcgagagactccgtctc----aaaaaaaaaaaaaaagtaataaagaaaaTTGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29318002 258 + 173848474 ggccgaggcgggaggatcacgaggtcaggagatcgcgaccatcctggctaacacggtgaaaccctgtctctacc-aaataatagaaaaaa-tagccgggcgtggtgacgggcgcctgtagtcccagctactcgggaggctgaggcagaagaatggcgtaaacccgggaggcggagcttgcagtgagccaagatcgtgccactgggcgacagagcgagagactccgtctc------aaaaaaaaaaaaagtaataaagaaaaTTGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5118159 257 +   6154872 ggccgaggcgggcggatcacgaggtcaggagatcgcgaccatcctggctaacacggtgaaaccccgtctctacc-aaaaaacagaaaaaattagccgggcgtggtgaccggcgcctgtagtcccagctactcgcgaggctgaggcagaaga--ggcgta---ccgggaggcggagcttgcagtgagccaagatcgtgccactgggcgacagagc--gagactccgtctcaaaaaaaaaaaaaaaaaaagtaataaa-aaaGTTGTC
i gorGor5.CYUI01015250v1   C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            183245   0 -    375362 C
e otoGar3.GL873742           1492918 585 -   2232465 I
e aotNan1.NW_018494050v1      120642   6 -    285216 I
e cebCap1.NW_016108108v1      174663 135 -    373274 I
e calJac3.chr4             171350073   0 - 171630274 C
e colAng1.NW_012115566v1     1809416  10 -   3067355 I
e manLeu1.NW_012104165v1     1936207  10 +   2316924 I
e chlSab2.chr17             28263654  10 -  71996105 I
e cerAty1.NW_012001495v1     1810044  10 -   2157725 I
e macNem1.NW_012011356v1     1932520  10 -   2996164 I
e macFas5.chr4              28961156   0 - 170955103 C
e rheMac8.chr4              29300579  10 + 172585720 I
e nomLeu3.chr1a             74120662 100 + 122973662 M

a score=4095.000000
s hg38.chr6_GL000254v2_alt    103719 1 +   4827813 T
s panTro5.chr6              29083876 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29318260 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5118416 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29300589 1 + 172585720 T
i rheMac8.chr4             I 10 C 0
s macNem1.NW_012011356v1     1932530 1 -   2996164 T
i macNem1.NW_012011356v1   I 10 C 0
s cerAty1.NW_012001495v1     1810054 1 -   2157725 T
i cerAty1.NW_012001495v1   I 10 C 0
s chlSab2.chr17             28263664 1 -  71996105 T
i chlSab2.chr17            I 10 C 0
s manLeu1.NW_012104165v1     1936217 1 +   2316924 T
i manLeu1.NW_012104165v1   I 10 C 0
s colAng1.NW_012115566v1     1809426 1 -   3067355 T
i colAng1.NW_012115566v1   I 10 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            183245 0 -    375362 C
e otoGar3.GL873742           1492918 585 -   2232465 I
e aotNan1.NW_018494050v1      120642 6 -    285216 I
e cebCap1.NW_016108108v1      174663 135 -    373274 I
e calJac3.chr4             171350073 0 - 171630274 C
e macFas5.chr4              28961156 0 - 170955103 C
e nomLeu3.chr1a             74120662 100 + 122973662 M

a score=5500.000000
s hg38.chr6_GL000254v2_alt    103720 1 +   4827813 G
s panTro5.chr6              29083877 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29318261 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5118417 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29300590 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     1932531 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1810055 1 -   2157725 G
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28263665 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1936218 1 +   2316924 G
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1809427 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018494050v1      120648 1 -    285216 G
i aotNan1.NW_018494050v1   I 6 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            183245 0 -    375362 C
e otoGar3.GL873742           1492918 585 -   2232465 I
e cebCap1.NW_016108108v1      174663 135 -    373274 I
e calJac3.chr4             171350073 0 - 171630274 C
e macFas5.chr4              28961156 0 - 170955103 C
e nomLeu3.chr1a             74120662 100 + 122973662 M

a score=812769.000000
s hg38.chr6_GL000254v2_alt    103721 112 +   4827813 AGAGCTTACGTTTTTCTTTTATTAAATATTTCCACA-TTTATCTTTTATTTCCTACTTTTTAAATAACAATACT----------------CCAAAGGTTAATGAGCTCGTCAATTTGGCGACGCCATTG
s panTro5.chr6              29083878 112 + 175400573 AGAGCTTACGTTTTTCTTTTATTAAATATTTCCACA-TTTATCTTTTATTTCCTACTTTTTAAATAACAATACT----------------CCAAAGGTTAATGAGCTCGTCAATTTGGCGACGCCATTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29318262 112 + 173848474 AGAGCTTACGTTTTTCTTTTATTAAATATTTCCACA-TTTATCTTTTATTTCCTACTTTTTAAATAACAATACT----------------CCAAAGGTTAATGAGCTCGTCAATTTGGCGACGCCATTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5118418 113 +   6154872 AGAGCTTACGTTTTTCTTTTATTAAATATTTCCACATTTTATCTTTTATTTCCTACTTTTTAAATAACAGTACT----------------CCAAAGGTTAATGAACTCGTCAATTTGGCGACGCCATTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29300591 128 + 172585720 AGAGCTTACGTTTTACTTTTATTAAATATTTCTACA-TTTATCTTTTATTTCCTGCTTTTTAAATAATAATACTGCAAAGTAATAATACCCCAAAGGTTAATGAGCTCGTCAATCTGGCGACGCCATTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28961156 128 - 170955103 AGAGCTTACGTTTTACTTTTATTAAATATTTCTACA-TTTATCTTTTATTTCCTGCTTTTTAAATAATAATACTGCAAAGTAATAATACCCCAAAGGTTAATGAGCTCGTCAATTTGGCGACGCCATTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1932532 128 -   2996164 AGAGCTTACGTTTTACTTTTATTAAATATTTCTACA-TTTATCTTTTATTTCCTGCTTTTTAAATAATAATACTGCAAAGTAATAATACCCCAAAGGTTAATGAGCTCGTCAATTTGGCGACGCCATTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1810056 128 -   2157725 AGAGCttacgttttacttttattaagtatttctaca-tttatcttttatttcctactttttaAATAATAATACTGCAAAGTAATAATACCCCAAAGGTTAATGAGCTCGTCAATTTGGCGACGCCATTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28263666 128 -  71996105 AGAGCttacgttttacttttattaaatatttctaca-tttatcttttatttcctactttttaAATAATAATACTGCAAAGTAATAATACCCCAAAGGTTAATGAGCTCGTCAATTTGGCGACGCCATTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1936219 128 +   2316924 AGAGCTTACGttttatttttattaaatatttctaca-tttatcttttatttcctactttttaAATAATAATACTGCAAAGTAATAATACCCCAAAGGTTAATGAGCTCGTCAATTTGGCGACGCCATTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1809428 127 -   3067355 AGAGCTTACGTTTTTCATTTAATAAATATTTCTACA-TTTATCTTTTATTTCCTACTTTTTAAGTAATAATACTGCAAAGTAATAATACCCCAAAGGTTAATGAGCTCGTC-TTTTGGCGACGCCATTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171350073 125 - 171630274 AGAGCTTCTGTTTTTCTTTTATTAAGCATTTCTATC-CTTCTCTTTTATTTCCTGCCTTTTACATGACACTGCGGCAAAACGGTAATACTCCAAAGGTGAGTGAGC---TCGATTCGGTGACGCCGTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            183245 128 -    375362 AGAGCTTTTGTTTTTCTTTTATTAAATATTTCTATC-CTTATCTTTTATTTGCTGCCTTTCAAAGAATACTACTGCAAAACAGTAATACTCCAAAGGTGAGTGAGCTCGTCGATTAGGTGACGCCGTGG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      120649 128 -    285216 AGAGCttatgtttttcttttattaaatatttctatc-cttatcttttatttCCTGCCTTTTAAATAACACTACTGCAAAACAATAATACTCCAAAGGTGACTGAGCGCGTCGATTCGGTGACGCCGTGG
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e otoGar3.GL873742           1492918 585 -   2232465 I
e cebCap1.NW_016108108v1      174663 135 -    373274 I
e nomLeu3.chr1a             74120662 100 + 122973662 M

a score=315278.000000
s hg38.chr6_GL000254v2_alt    103833 35 +   4827813 AAGTTTTGGAATCCGGA---GCCGTCTTTGTCTTCCAG
s panTro5.chr6              29083990 35 + 175400573 AAGTTTTGGAATCCGGA---GCCGTCTTTGTCTTCCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29318374 35 + 173848474 AAGTTTTGGAATCCGGA---GCCGTCTTTGTCTTCCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5118531 35 +   6154872 AAGTTTTGGAATCCGGA---GCCGTCTTTGTCTTCCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29300719 35 + 172585720 AAGTTTTGGAATCGGGA---GCCGTCTTTGTCTTCCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28961284 35 - 170955103 AAGTTTTGGAATCGGGA---GCCGTCTTTGTCTTCCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1932660 35 -   2996164 AAGTTTTGGAATCGGGA---GCCGTCTTTGTCTTCCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1810184 38 -   2157725 AAGTTTTCGAATCGGGAGCCGCCGTCTTTGTCTTCCAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28263794 35 -  71996105 AAGTTTTGGAATCGGGA---GCCGTCTTTGTCTTCCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1936347 38 +   2316924 AAGTTTTCGAATCGGGAGCCGCCGTCTTTGTCTTCCAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1809555 35 -   3067355 AAGTTTTGGAATCGGGA---GCCGTCTTTGTCTTCCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171350198 35 - 171630274 AAGTTTTGGAGTCGGGA---GCCGTCTTTGCCTTCCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            183373 35 -    375362 AAGTTTTGGAGTCGGGA---GCCGTCTTTGTCTTCCAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      174798 35 -    373274 AAGTTTTGGAGTCGGGA---GCCGTCTTTGTCTTCCAG
i cebCap1.NW_016108108v1   I 135 C 0
s aotNan1.NW_018494050v1      120777 35 -    285216 AAGTTTTGGAGTCGGGA---GCCGTCTTTGTCTTCCAG
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e otoGar3.GL873742           1492918 585 -   2232465 I
e nomLeu3.chr1a             74120662 100 + 122973662 M

a score=1344516.000000
s hg38.chr6_GL000254v2_alt    103868 162 +   4827813 CTCCATCTTTTCCACCTTTTGCTTAGGCAGTCCCCC-GAGTCGTGTCAAGGCTGAGGAGTAGAAATGGAACAGCACTAATATTAATGGCAAAACCGTTGTGAAATAGGGTTACTTTCTGTTTAAGCAAGGAAAATAAAGTAAAGCAATGGG-AAAA---------------------AAAT----TAAA
s panTro5.chr6              29084025 162 + 175400573 CTCCATCTTTTCCACCTTTTGCTTAGGCAGCCCCCC-GAGTCGTGTCAAGGCTGAGGAGTAGAAATGGAACAGCAGTAATATTAATGGCAAAACCGTTGTGAAATAGGGTTACTTTCTGTTTaagcaaggaaaataaagtaaagcaatggg-aaaa---------------------aaat----taaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29318409 162 + 173848474 CTCCATCTTTTCCACCTTTTGCTTAGGCAGCCCCCC-GAGTCGTGTCAAGGCTGAGGAGTAGAAATGGAACAGCAGTAATATTAATGGCAAAACCGTTGTGAAATAGGGTTACTTTCTGTTTaagcaaggaaaataaagtaaagcaatggg-aaaa---------------------aaat----taaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5118566 163 +   6154872 CTCCATCTTTTCCACCTTTTGCTTAGGCAGCCCCCC-GAGTCGTGTCAAGGCCGAGAAGTAGAAATGGAACAGCACTAATATAAATGGCAAAACCGTTGTGAAATAGGGTTACTTTCTGTTTAAGCAAGGAAAATAAAGTAAAGCAATGGGAAAAA---------------------AAAT----TAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74120766 157 + 122973662 CTCCATCTTTT-CACCTTTTGCTTAGGCAGCCCCCCTGAGTCGTGTCAAGGCTGAGGAGTAGAGATGGTACAGCACTAATATTAATGGCAAAACCGTTGTGAAATAGGGTTACTTTCTGTTTAAGCAAGGAAAA-----TAAAGCAATGGG-GAAA---------------------AAAA----CAAA
i nomLeu3.chr1a            M 100 I 2
s rheMac8.chr4              29300754 162 + 172585720 CTCCATCTTTTCCACCTTTTGCTTGGGCAGCCCCCGTGAGTCGTGTCAAGGCTGACGAGTAGAAATGGAACAGCACTAATATTAATGGCGAAACCTTTGTAAAATACGTTTGGTTTCTGTTTAA-Caaggaaaagaaagtaaagcaatgga-aaag---------------------aaTT----TAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28961319 162 - 170955103 CTCCATCTTTTCCACCTTTTGCTTGGGCAGCCCCCGTGAGTCGTGTCAAGGCTGACGAGTAGAAATGGAACAGCACTAATATTAATGGCGAAACCTTTGTAAAATACGTTTGGTTTCTGTTTAA-CAAGGAAAAGAAAGTAAAGCAATGGA-AAAG---------------------AATT----TAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1932695 162 -   2996164 CTCCATCTTTTCCACCTTTTGCTTGGGCAGCCCCCGTGAGTCGTGTCAAGGCTGACGAGTAGAAATGGAACAGCACTAATATTAATGGCGAAACCTTTGTATAATACGTTTGGTTTCTGTTTAA-CAAGGAAAAGAAAGTAAAGCAATGGA-AAAG---------------------AATG----TAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1810222 162 -   2157725 CTCCATCTTTTCTACCTTTTGCTTGGGCAGCCCCCGTGAGTCGTGTCAAGGCTGAGGAGTAGAAATGGAACAGCACTAATATTAATGGCGAAACCTTTGTGAAATAGGTTTGCTTTCTGTTTAA-CAAGGAAAAGAAAGTAAAGCAATGGA-AAAG---------------------AATT----TAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28263829 162 -  71996105 CTCCATCTTTTCCACCTTTTGCTTGGGCAGCCCCCGTGAGTCGTGTCAAGGCTGAGGAGTAGAAATGGAACAGCACTAATATTAATGGCGAAACCTTTGTGAAATAGGTTTGCTTTCTGTTTAA-CAAGGAAAAGAAAGTAAAGCAACGGA-AAAT---------------------AATT----TAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1936385 162 +   2316924 CTCCATCTTTTCTACCTTTTGCTTGGGCAGCCCCCGTGAGTCGTGTCAAGGCTGAGGAGTAGAAATGGAACAGCACTAATATTAATGGCGAAACCTTTGTGAAATAGATTTGCTTTCTGTTTAA-Caaggaaaagaaagtaaagcaatgga-aaag---------------------aaTT----TAAA
i manLeu1.NW_012104165v1   C 0 I 108
s colAng1.NW_012115566v1     1809590 162 -   3067355 CTCCATCTTTTCCGCCTTTTGCTTGGGCAGCCCACATGAGTCGTGTCAAGGCTGAGGAGTAGAAATGGAACAGCACTAATATTAATGGCGAAACCTTTGTGAAATAGGTTTGCTTTCTGTTTAA-Caaggaaaagaaaataaagcaataga-aaag---------------------aaTT----TAAA
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chr4             171350233 162 - 171630274 CTCCATCTTTTCCACCTTTTGCTTAGGCAAGGCT---GAGTCGTGTCAAGGCTGCCGAGTAGAAATGGAACGGCCCTAATATTCATGGCAAAACCGTTGTGAAATAGGTTTACTTTCTGTTTAAAC-AAGAAAAGAAAGTGAAACAGTCAA-AAAA------------------GGGGAGT----TAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            183408 181 -    375362 CTCCAACTTTTCCACCTTTTGCTTAGGCAAAGCT---GAGTCGTGCCAAGGCTGCGGAGTAGAAATGGAACGGTCCTAATATTAATGGCAAAACCGTTGTGAAATAGGTTTACTTTCTCTTTAAACGAGGAAAAGAAGGTaaaacaataaa-aaaaaaaaaaaaaaaaaaGGGGGGGGAGT----TATA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      174833 168 -    373274 CTCCATGTTTTCCACCTGTTGCTTAGGCAAGGCT---GAGTCGTGCCAAGGCTGCGGAGTAGAAATGGAACGGTCCTAATAGTAATGGCAAAACCGTTGTGAAATACGTTTACTTTCTGTTTAAACAAGGAAAAGAAAGTAAAACAGTCAG-TAAA-----------------GGGGGAGTTAAATAAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      120812 163 -    285216 CTCCATCTTTTCCACCTTTTGCTTAGGCAAGGCT---GAGTCGTGCCAAGGCTGCGGAGTAGAAATGGAATGGTCCTAATATTAATGGCAAAACCGTTGTGAAATAGGTTTACTTTCTGTTTAAAC-AAGAAAAGAAAGTAAAACAATCCA-AAAA-----------------GGAGGAGT----TAAG
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e otoGar3.GL873742           1492918 585 -   2232465 I

a score=-23770.000000
s hg38.chr6_GL000254v2_alt    104030  6 +   4827813 AG--------------------------------CAAA
s panTro5.chr6              29084187  6 + 175400573 ag--------------------------------caaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29318571  6 + 173848474 ag--------------------------------caaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5118729  6 +   6154872 AG--------------------------------CAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74120925  6 + 122973662 AA--------------------------------CAAA
i nomLeu3.chr1a            I 2 C 0
s rheMac8.chr4              29300916  6 + 172585720 CA--------------------------------CAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28961481  6 - 170955103 CA--------------------------------CAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1932857  6 -   2996164 CA--------------------------------CAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1810384 38 -   2157725 CACAAAAACAACTGGAGGAAAAGAATTTAAACACCAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28263991  6 -  71996105 CA--------------------------------CAAA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1809753  5 -   3067355 -A--------------------------------TGAA
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chr4             171350395  7 - 171630274 -------------------AAAG------------AAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            183589  8 -    375362 -------------------AAGG-----------AAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      175001  8 -    373274 -------------------AAGG-----------AAAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      120975  4 -    285216 -------------------G---------------AAA
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e otoGar3.GL873742           1492918 585 -   2232465 I
e manLeu1.NW_012104165v1     1936547 108 +   2316924 I

a score=24649.000000
s hg38.chr6_GL000254v2_alt    104036 5 +   4827813 AGAAA
s panTro5.chr6              29084193 5 + 175400573 agaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29318577 5 + 173848474 agaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5118735 5 +   6154872 AAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74120931 5 + 122973662 GGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29300922 5 + 172585720 AACAA
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              28961487 5 - 170955103 AACAA
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     1932863 5 -   2996164 AACAA
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012001495v1     1810422 5 -   2157725 AACAA
i cerAty1.NW_012001495v1   C 0 I 1
s chlSab2.chr17             28263997 5 -  71996105 AACAA
i chlSab2.chr17            C 0 I 1
s colAng1.NW_012115566v1     1809758 5 -   3067355 AACAA
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chr4             171350402 5 - 171630274 AACGA
i calJac3.chr4             C 0 I 2
s saiBol1.JH378348            183597 5 -    375362 AATAA
i saiBol1.JH378348         C 0 I 2
s cebCap1.NW_016108108v1      175009 5 -    373274 AAGGA
i cebCap1.NW_016108108v1   C 0 I 2
s aotNan1.NW_018494050v1      120979 5 -    285216 AACGA
i aotNan1.NW_018494050v1   C 0 I 2
s otoGar3.GL873742           1493503 5 -   2232465 AAAAA
i otoGar3.GL873742         I 585 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e manLeu1.NW_012104165v1     1936547 108 +   2316924 I

a score=1189758.000000
s hg38.chr6_GL000254v2_alt    104041 107 +   4827813 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccGTACTGAAACGGTTCTCTCGAGAGTATATTCAAGA
s panTro5.chr6              29084198 107 + 175400573 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccGTGCTGAAACAGTCGTCTCGAGAGTATATTCAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29318582 107 + 173848474 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccGTGCTGAAACGGTCGTCTCGAGAGTATATTCAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5118740 107 +   6154872 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccGTGCTCAAACAGTTATCTCGAGAGTGTATTCAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74120936 107 + 122973662 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccTTACTGAAACAGCTTTCTCGAGAGTCTATTCAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29300928 107 + 172585720 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccTTATCGAAACTACTCTCTCGAGAATATATTCAAGA
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              28961493 107 - 170955103 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccTTATCGAAACTACTCTCTCGAGAATATATTCAAGA
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     1932869 107 -   2996164 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccTTATCGAAACTAGTCTCTCGAGAATATATTCAAGA
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012001495v1     1810428 107 -   2157725 tggaggtgctggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccTTATTGAAATCGTTCTCTCGAGAATATATTCAAGA
i cerAty1.NW_012001495v1   I 1 C 0
s chlSab2.chr17             28264003 107 -  71996105 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccTTATTGAAACCACTGTCTCGAGAATATATTCAAGA
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012104165v1     1936655 107 +   2316924 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccTTATTGAAATTATCCTCTCGAGAATATATTCAAGA
i manLeu1.NW_012104165v1   I 108 C 0
s colAng1.NW_012115566v1     1809764 107 -   3067355 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccTTATCGAAACCTTTCACTCGAGAACTTATTCAAGA
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chr4             171350409 107 - 171630274 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccATGCAGGGGCCTTGCTCTCGGGAATCTACTCAAGA
i calJac3.chr4             I 2 C 0
s saiBol1.JH378348            183604 106 -    375362 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccTTGCCAGGGCTGCGCTCTCGGG-ATGTATTCAAGA
i saiBol1.JH378348         I 2 C 0
s cebCap1.NW_016108108v1      175016 107 -    373274 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccTTGCTGGGACCGTGCTCTCGGGAATGTATTCAAGA
i cebCap1.NW_016108108v1   I 2 I 70
s aotNan1.NW_018494050v1      120986 107 -    285216 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccTTGCAGAGGCCGTGCTCTCGGGAATATATTCAAGA
i aotNan1.NW_018494050v1   I 2 C 0
s otoGar3.GL873742           1493508 106 -   2232465 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccCCATAGCG-TCGTATTCTCGGGAATGTATTCAAGA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I

a score=487122.000000
s hg38.chr6_GL000254v2_alt    104148 86 +   4827813 TCAGAACCTGACCCTTTTGCTAGGTTTCAGAACCATTAGTTGTAATCAGCCAAGGTCTATTTTATTTAGT-----TATTTCTGATATCTCA
s panTro5.chr6              29084305 86 + 175400573 TCAGAACCTGACCCTTTTGCTAGGTTTCAGAACCATTAGTTGTAACCAGCCAAGGTCTATTTTATTTAGT-----TATTTCTGATATCTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29318689 86 + 173848474 TCAGAACCTGACCCTTTTGCTAGGTTTCAGAACCATTAGTTGTAACCAGCCAAGGTCTATTTTATTTAGT-----TATTTCTGATATCTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5118847 86 +   6154872 TCAGAACCTGACCCTTTTGCTAGGTTTCAGAACCATTAGTTGTAACCAGCCAAGGTCTATTTTATTTAGT-----TATTTCTGATATCTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74121043 51 + 122973662 -CAGAACCTGACCATTTTGCCAGGTTTCAGAACAGTTGGTTGTAACAAGCCA---------------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29301035 85 + 172585720 -CAGAATCTGACCATTTTGCTACGTTTCAGAACAATTAGTTGTAACAAGCCAAAGTCTACTTTATTTAGC-----TATTTCTTATATCTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28961600 85 - 170955103 -CAGAATCTGACCATTTTGCTACGTTTCAGAACAATTAGTTGTAACAAGCCAAAGTCTACTTTATTTAGC-----TATTTCTTATATCTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1932976 85 -   2996164 -CAGAATCTGACCATTTTGCTACGTTTCAGAACAATTAGTTGTAACAAGCCAAAGTCTACTTTATTTAGC-----TATTTCTTATATCTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1810535 85 -   2157725 -CAGAATCTGACCATTTTGCTACGTTTCAGAACAATTAGTTGTAACAAGCCAAAGTCTACTTTATTTAGC-----TATTTCTTATATCTTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28264110 85 -  71996105 -CAGAATCTGACCATTTTGCTACGTTTCAGAACAATTAGTTATAATAAGCCAAAGTCTACTTTATTTAGC-----TATTTCTTATATCTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1936762 85 +   2316924 -CAGAATCTGACCATTTTGCTACGTTTCAGAACAATTAGTTGTAACAAGCCAAAGTCTACTTTATTTAGC-----TATTTCTTATATCTTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1809871 85 -   3067355 -CAGAATCTGACCATTTTGCTACGTTTCAGAACAATTAGTTGTAACAAGCCAAAGTCTATTTTATTTAGC-----TATTTCTTATATCTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171350516 79 - 171630274 -CGGAGCCCGAGCACTTTGCTGCGCGTCGGAACCATCGGCTGTGATCAGTCA-AGTC-----TATTTCGC-----TGCTCGTGAAACGCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            183710 65 -    375362 -GGGAGCC-------------GCGCTGCAGACCCGCCAGCCGCGACC--TCAGAGTC-----TGTTCAGC-----TGCGTGTGAAACGCGG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      121093 80 -    285216 -CGGAGCCCGAGCACTTTGCTGCGCTTCAGAACCATCAGCTGTGGTCAATCAAAGTC-----TATTTAGC-----TGCTTGTGAAATGCTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1493614 85 -   2232465 -CAGAATAC-ACCATCTTGCTATGCTTCAGCATACCGAA----AGCATGCCAAAGTCCATTCTCCTAACCTGGCTTATTTCTACAATCTTA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e cebCap1.NW_016108108v1      175123 70 -    373274 I

a score=605423.000000
s hg38.chr6_GL000254v2_alt    104234 67 +   4827813 AATTTAGGTTTTGCGTCCCTCTTTGCTGACAGCTGAGCAAACCGCATTCTACACCGAAGGCCCTCTA
s panTro5.chr6              29084391 67 + 175400573 AATTTAGGTTTTGCGTCCCTCTTTGCTGACAGCTGAGCAAACCGCATTCTACACCGAAGGCCCTCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29318775 67 + 173848474 AATTTAGGTTTTGCGTCCCTCTTTGCTGACAGCTGAGCAAACCGCATTCTACACCGAAGGCCCTCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5118933 67 +   6154872 AATTTAGGTTTTGCGTCCCTCTTTGCTGACAGCTGAGCAAACCGCATTCTACACCGAAGGCCCTCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74121094 61 + 122973662 -----AGGTTTTGGGTCCCTCTTTGCTGACAGCTGAGCAAACCGCATTCTACACAGAAGG-CCTCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29301120 66 + 172585720 AATTTAGGTTTTGTGTCCCTGTTTGCTGATAGCTGAGCAAACCGCATTCTACACCGAAGG-CCTCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28961685 66 - 170955103 AATTTAGGTTTTGTGTCCCTGTTTGCTGATAGCTGAGCAAACCGCATTCTACACCGAAGG-CCTCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1933061 66 -   2996164 AATTTAGGTTTTGTGTCCCTGTTTGCTGATAGCTGAGCAAACCGCATTCTACACCGAAGG-CCTCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1810620 66 -   2157725 AATTTAGGTTTTGTGTCCCTGTTTGCTGATAGCTGAGCAAACCGCATTCTACACCGAAGG-CCTCTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28264195 66 -  71996105 AATTTAGGTTTTGTGTCCCTGTTTGCTGATAGCTGAGCAAATCGCATTCTACACCGAAGG-CCTCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1936847 66 +   2316924 AATTTAGGTTTTGTGTCCCTGTTTGCTGATAGCTGAGCAAACCGCATTCTACACCGAAGG-CCTCTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1809956 66 -   3067355 AATTTAGGTTTTGTGTCCCTGTTTGCTGACAGCTGAGCAAACCGCATTCTACACCAAAGA-CCTCTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171350595 66 - 171630274 AATTTAAGTTTCGGGTCCCGCTTTGCTGGCGGCTGGACGAACTGCGTTCTCCACCCGAGG-CGCCTC
i calJac3.chr4             C 0 I 656
s saiBol1.JH378348            183775 65 -    375362 AACTGAGGTTTCGCGTCCCGCTTTGCTGGCAGCTGCGCGAACTGCGTTCGACCCCCGAGG-CGCC-C
i saiBol1.JH378348         C 0 I 2
s cebCap1.NW_016108108v1      175193 65 -    373274 AATTTAGGTTTCGCGTCCCGCTTTGCTGGCAGCTGGGCGAACTGCGTTCTACCCCCGAGG-CGCC-C
i cebCap1.NW_016108108v1   I 70 C 0
s aotNan1.NW_018494050v1      121173 66 -    285216 AATTTAGGTTTCGTGTCCCGCTTTGCTGGCCGCTGGGCGAACTGCGTTCTACACCGGAGG-CGCCTC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1493699 66 -   2232465 AACTTAGGTTTTGTGTGCCGCTTCACTGACAGACGAGTAAACTCCATTCTAGACCAAAAG-CCTTTG
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I

a score=9555.000000
s hg38.chr6_GL000254v2_alt    104301 1 +   4827813 T
s panTro5.chr6              29084458 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29318842 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5119000 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74121155 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29301186 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28961751 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1933127 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1810686 1 -   2157725 T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28264261 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1936913 1 +   2316924 T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1810022 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      175258 1 -    373274 T
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      121239 1 -    285216 T
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1493765 1 -   2232465 T
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            183840 2 -    375362 I
e calJac3.chr4             171350661 656 - 171630274 I

a score=738853.000000
s hg38.chr6_GL000254v2_alt    104302 83 +   4827813 TGATGGCCCTGGGATTTTTCTGCTCGTCAGTCCGGAGTCACTTACCGGGCACCACTAGAAGAA-CCCGGGATGAAACATTTTCT
s panTro5.chr6              29084459 83 + 175400573 TGATGGCCCTGGGATTTTTCTGCTCGTCAGTCCGGAGTCACTTACCGGGCACCACTAGAAGAA-CCCGGGATGAAACATTTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29318843 83 + 173848474 TGATGGCCCTGGGATTTTTCTGCTCGTCAGTCCGGAGTCACTTACCGGGCACCACTAGAAGAA-CCCGGGATGAAACATTTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5119001 83 +   6154872 TGATGGCCCTGGGATTTTTCTGCTCGTCAGTCCGGAGTCACTTACCGGGCACCACTAGAAGAA-CCCGGGATGAAACATTTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74121156 83 + 122973662 TGATGGCCTTGGGATTTTTCTCCTCGTCAGTCCGGAGTCACTTTCCGGGCACCACTAGAAGAA-CCAGGAATGAAACATTTTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29301187 81 + 172585720 TGATGGTCCTGGGATTTTTCTGCTCGTCAGTCCGGAGTCACTTCCCGGCCACCACTAGAAGAA-CCAGGGATGAA--ATTTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28961752 81 - 170955103 TGATGGTCCTGGGATTTTTCTGCTCGTCAGTCCGGAGTCACTTCCCGGCCACCACTAGAAGAA-CCAGGGATGAA--ATTTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1933128 70 -   2996164 TGATGGTCCTGG-----------TCGTCAGTCCGGAGTCACTTCCCGGCCACCACTAGAAGAA-CCAGGGATGAA--ATTTTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1810687 83 -   2157725 TGATGGTCCTGGGATTTTTCTGCTCGTCAGTCCGGAGTCACTTCCCGGCCACCACTAGAAGAA-CCAGGGATGAAACATTTTCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28264262 83 -  71996105 TGATGGTCCTGGGATTTTTCTGCTCGTCAGTCCGGAGTCACTTCCCGGCCACCATTAGAAGAA-CCAGGGATGAAACATTTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1936914 83 +   2316924 TGATGGTCCTGGGATTTTTCTGCTCGTCAGTCCGGAGTCACTTCCCGGCCACCACTAGAAGAA-CCAGGGATGAAACATTTTCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1810023 83 -   3067355 TGATGGTCCTGGGATTTTTCTGCTCGTCAGTCCGGAGTCACTTCCCGGCCACCACTAGAAGAA-CCAGGGATGAAACATTTTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171351317 78 - 171630274 TGACGGTCCCGGGCTCT--CTGCTCGTCAGTCCGGAGTCACCTCCCGG-CGCCGCT-GAAGAG-CCCGGGACGAAACG-TTTCT
i calJac3.chr4             I 656 C 0
s saiBol1.JH378348            183842 81 -    375362 -GACGGTCCCGGGCTCTGCCTGCCCCTCAGTCCGGAGTCACTTCCCGG-CGCCGCTGGAAGAG-CCCGGGACGGAGCGTTTTCT
i saiBol1.JH378348         I 2 C 0
s cebCap1.NW_016108108v1      175259 82 -    373274 TGACGGTCCCGGGCTCCTCCTGCTCGTCAGTCCAGAGTCACTTCCCGG-GGCCGCTGGAAGAG-CCCGGGACGAATCGTTTTCT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      121240 82 -    285216 TGACGGTCCTGGGCTCTTCCTGCTCGTCAGTCCGGAGTCACTTCCCGG-CGCCGCTGGAAGAG-CCCGGGACGGAACGTTTTCT
i aotNan1.NW_018494050v1   C 0 I 19
s otoGar3.GL873742           1493766 72 -   2232465 TGGTGGTCCTAGAA-----AGGCTCGTCAGT-CGGAGTCACTTCTCTC-CAGTACTAGAAGAGCCCCGGGATGAA--GTTT---
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I

a score=22922.000000
s hg38.chr6_GL000254v2_alt    104385 4 +   4827813 CCCG-
s panTro5.chr6              29084542 4 + 175400573 CCCG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29318926 4 + 173848474 CCCG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5119084 4 +   6154872 CCCG-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74121239 4 + 122973662 CCCG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29301268 4 + 172585720 CCTG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28961833 4 - 170955103 CCTG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1933198 4 -   2996164 CCTG-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1810770 4 -   2157725 CCCG-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28264345 4 -  71996105 CCCG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1936997 4 +   2316924 CCAG-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1810106 4 -   3067355 CCCG-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171351395 4 - 171630274 GCGG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            183923 4 -    375362 CCCG-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      175341 4 -    373274 CCCG-
i cebCap1.NW_016108108v1   C 0 I 20111
s otoGar3.GL873742           1493838 4 -   2232465 -CTAA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e aotNan1.NW_018494050v1      121322 19 -    285216 I

a score=92470.000000
s hg38.chr6_GL000254v2_alt    104389 17 +   4827813 TGTCTTGACTCTCTCCT
s panTro5.chr6              29084546 17 + 175400573 TGTCTTGACTCTCTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29318930 17 + 173848474 TGTCTTGACTCTCTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5119088 17 +   6154872 TGTCTTGACTCTCTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74121243 17 + 122973662 TGTCTTGACTCTCTCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29301272 17 + 172585720 AGTTTTGACTGTCTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28961837 17 - 170955103 AGTTTTGACTGTCTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1933202 17 -   2996164 AGTTTTGACTGTCTCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1810774 17 -   2157725 AGTTTTGACTGTCTCCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28264349 17 -  71996105 AGTCTTGACTGTCTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1937001 17 +   2316924 AGTCTTGACTGTCTCCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1810110 17 -   3067355 AGTCTTGACTGTCTCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171351399 16 - 171630274 CGTGTGGACTCCG-TCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            183927 17 -    375362 CGTGTGGACTTCGCTCT
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1493842 16 -   2232465 TGTCTTCACTCTCCCT-
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e aotNan1.NW_018494050v1      121322 19 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I

a score=45884.000000
s hg38.chr6_GL000254v2_alt    104406 5 +   4827813 TTCTT
s panTro5.chr6              29084563 5 + 175400573 TTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29318947 5 + 173848474 TTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5119105 5 +   6154872 TTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74121260 5 + 122973662 TTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29301289 5 + 172585720 TTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28961854 5 - 170955103 TTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1933219 5 -   2996164 TTCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1810791 5 -   2157725 TTCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28264366 5 -  71996105 TTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1937018 5 +   2316924 TTCTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1810127 5 -   3067355 TTCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171351415 4 - 171630274 -TCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            183944 4 -    375362 -TCCT
i saiBol1.JH378348         C 0 I 222
s aotNan1.NW_018494050v1      121341 5 -    285216 TTCCT
i aotNan1.NW_018494050v1   I 19 C 0
s otoGar3.GL873742           1493858 5 -   2232465 CTCTT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I

a score=746911.000000
s hg38.chr6_GL000254v2_alt    104411 104 +   4827813 TCACCGCTGCTTTAAAGGGCTGCCAGAAAGCCACAAAGTACAAAGCGAGGCAT-------TTAGAGACCATAGTAGATGCAGGTGGCGAGGGAAGACAGGTGGAGAAACGC
s panTro5.chr6              29084568 104 + 175400573 TCACCGCTGCTTTAAAGGGCTGCCAGAAAGCCACAAAGTACAAAGCGAGGCAT-------TTAGAGACCATAGTAGATGCAGGTGGCGAGGGAAGACAGGTGGAGAAACGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29318952 104 + 173848474 TCACCGCTGCTTTAAAGGGCTGCCAGAAAGCCACAAAGTACAAAGCGAGGCAT-------TTAGAGACCATAGTAGATGCAGGTGGCGAGGGAAGACAGGTGGAGAAACGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5119110 104 +   6154872 TCACCGCTGCTTTAAAGGGCTGCCAGAAAGCCACAAAGTACAAAGCGAGGCAT-------TTAGAGACCATAGTAGATGCAGGTGGCGAGGGAAGACAGGTGGACAAACGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74121265 104 + 122973662 TCTCCGCTGCTTTAAAGGGCTGCCAGAAAGCCACAAAGTACAAAGCGAGGCGT-------TTAGAGACCATATTAGATGCAGGTGGCGAGGGAAGACAGGTGGACAAACGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29301294 104 + 172585720 TCTCCGCTGCTTTAAAGGGCTGCGAGAAAGTCACAAAGTACAAAGCGAAGCAT-------TTAGAGACCATATTAGATGCAGATGGCGAGGGAAGACAGGTGGACAAAAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28961859 104 - 170955103 TCTCCGCTGCTTTAAAGGGCTGCGAGAAAGTCACAAAGTACAAAGCGAAGCAT-------TTAGAGACCATATTAGATGCAGATGGCGAGGGAAGACAGGTGGACAAAAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1933224 104 -   2996164 TCTCCGCTGCTTTAAAGGGCTGCGAGAAAGTCACAAAGTACAAAGCGAAGCAT-------TTAGAGACCATATTAGATGCAGATGGCGAGGGAAGACAGGTGGACAAAAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1810796 104 -   2157725 TCTCCGCTGCTTTAAAGGGCTGCGAGAAAGTCACAAAGTACAAAGCGAAGCAT-------TTAGAGACCATATTAGATGCAGATGGCGAGGGAAGACAGGTGGACAAAAGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28264371 104 -  71996105 TCTCCGCTGCTTTAAAGGGCTGCGAGAAAGTCACAAAGTACAAAGCGAGGCAT-------TTAGAAACCATATTAGATGCAGATGGCGAGGGAAGACAGGTGGACAAAAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1937023 104 +   2316924 TCTCTGCTGCTTTAAAGGGCTGCGAGAAAGTCACAAAGTACAAAGCGAGGCAT-------TTAGAGATCATATTAGATGCAGATGGCGAGGCAAGACAGGTGGACAAAAGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1810132 104 -   3067355 TCTCCGCTGCTTTAAAGGGCTACGAGAAAGTCACAAAGTACAAAGCGAGGCAT-------TTAGAGACCATATTAGATGCAGGTGGCGAGGGAAGACAGGTGGACAAAAGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171351419  93 - 171630274 TCTCCGC-------AAGAGCCGCC-GAAAGCTCCAAAG---ACAGCGCGGCAC-------GTGGAGGCCCCGGTGGACGCGGGTGGCGCGAGACGGCAGGTGGACGAGCGC
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1      121346 100 -    285216 TCTCCGCCGCTTTAAAGAGCCGCC-GAAAGCCGCAAGG---ACAGAGCGGCAT-------GTGGAGACCACGGTGGACGCAGGTGGCGCGAGACGGCAGGTGGACGAGCGC
i aotNan1.NW_018494050v1   C 0 I 51
s otoGar3.GL873742           1493863 110 -   2232465 TTTTCATTGTTTGAAAGGGCTGCCAGAAGGCCACAGAATACAATGCGGGAGATACAAAAATAAGAGCCCGTATTAGATCCAAGCGCGGACAGAAAACTTA-GGACAAACGC
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            183948 222 -    375362 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I

a score=356147.000000
s hg38.chr6_GL000254v2_alt    104515 58 +   4827813 AGACGGGTTCGTGTCGGT-GCAGCCACTGCTTTGGACCCGAGCCTCCGTCCCGCCGGGG
s panTro5.chr6              29084672 58 + 175400573 AGACGGGTTCGTGTCGGT-GCAGCCACTGCTTTGGACCCGAGCCTCCGTCCCGCCGGCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29319056 58 + 173848474 AGACGGGTTCGTGTCGGT-GCAGCCACTGCTTTGGACCCGAGCCTCCGTCCCGCCGGCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5119214 58 +   6154872 AGACGGGTTCGTGTCGGT-GCAGCCACTGCTTTGGACCCGAGCCTCCGTCCCGCCGGCG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74121369 58 + 122973662 AGACCGGTTCGTGTCGGT-GCAGCCACTGCTTTGGACCCGAGCCTCCGTCGCGCCGGCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29301398 58 + 172585720 AGACAGGTTCGTGTCGGT-GCAGCCACTGCTTTGGACCCGAGCGTCCGTCCCGCCGGCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28961963 58 - 170955103 AGACAGGTTCGTGTCGGT-GCAGCCACTGCTTTGGACCCGAGCGTCCGTCCCGCCGGCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1933328 58 -   2996164 AGACAGGTTCGTGTCGGT-GCAGCCACTGCTTTGGACCCGAGCGTCCGTCCCGCCGGCG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1810900 58 -   2157725 AGACAGGTTCGTGTCGGT-GCAGCCACTGCTTTGGACCCGAGCGTCCGTCCCGCCGGCG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28264475 58 -  71996105 AGACAGGTTCGTGTCGGT-GCAGCCACTGCTTTGGACCGGAGCGTCAGTCCCGCCGGCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1937127 58 +   2316924 AGACAGGTTCGTGTCGGT-GCAGCCACTGCTTTGGACCGGAGCGTAAGTCCTGCCGGCG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1810236 58 -   3067355 AGACAGGTTCGTGTCGGT-GCAGCCACTGCTTTGGACCCGAGCGTCCGTCCCGCCGGCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171351512 52 - 171630274 AGGCCGGGGCGTGGCGGG-GCAGCGGC-GCGTTGCACCCGCGCGTCCGTCTCCT-----
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1493973 37 -   2232465 AGAGCAGTTCGCGTCAGTCGCAGCCACT-------------------CTCCCGCAG---
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            183948 222 -    375362 I
e aotNan1.NW_018494050v1      121446 51 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I

a score=631702.000000
s hg38.chr6_GL000254v2_alt    104573 87 +   4827813 GCCGGGGTGCTGAG-CCCAGCGAGGCGCGGACTGGGGAGCGAGGA-AGAGGAGCACCCGCCA-----GATCGCGCCCCCTTTCGGGCAGAATCC
s panTro5.chr6              29084730 87 + 175400573 GCCGGGGTGCTGAG-CCCAGCGAGGCGCGGACTGGGGAGCGAGGA-AGAGGAGCACGCGCCA-----GATCGCGCCCCCTTTCGGGCAGAATCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29319114 87 + 173848474 GCCGGGGTGCTGAG-CCCAGCGAGGCGCGGACTGGGGAGCGAGGA-AGAGGAGCACGCGCCA-----GATCGCGCCCCCTTTCGGGCAGAATCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5119272 87 +   6154872 GCCGGGGTGCTGAG-CCCAGCAAGGCGCGGACTGGGGAGCCAGGA-AGAGGAGCACGCGTCA-----GATCGCGCCCCCTTTCGGGCAGAATCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74121427 87 + 122973662 GCCGGGGTGCTGAG-CCCAGCGAGGCGCGGACTGGGGAGCGAGCA-AGAGGAGCACGCGCCA-----AATTGCGCCCCCTCTCGGGCAGAATCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29301456 87 + 172585720 GCCGGAGTGCTAAG-CCCAGCGAGGCGCGGACTTGGGCGCTAGGA-AGAGGAGCACGCGCCA-----GATCGCGCTCCCTTTCGGGCAGAATCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28962021 87 - 170955103 GCCGGAGTGCTAAG-CCCAGCGAGGCGCGGACTTGGGCGCTAGGA-AGAGGAGCGCGCGCCA-----GATCGCGCTCCCTTTCGGGCAGAATCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1933386 87 -   2996164 GCCGGAGTGCTAAG-CCCAGCGAGGCGCGGACTTGGGCGCTAGGA-AGAGGAGCACGCGCCA-----GATCGCGCTCCCTTTCGGGCAGAATCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1810958 87 -   2157725 GCCGGGGTGCTGAG-CTCAGCGAGGCGCGGACTTGGGCGCTAGGA-AGAGGAGCACGTGCCA-----GATTGCGCCCCCTTTCGGGAAGAATCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28264533 87 -  71996105 GCCGGAGTGCTAAG-CCCAGCAAGGCGCGGACTTGGGCGCTAGGA-AGAGGAGCACGCGCCA-----GATCGCGCCCCCTTTCGGGCAGAATCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1937185 87 +   2316924 GCCGGAGTGCTAAG-CCCAGCGAGGCGCGGACTTGGGCGCTAGGA-AGAGGAGCACGCGCCA-----GATCGCGCCCCCTTTCGGGCAGAATCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1810294 87 -   3067355 GCCGGGGTGCTGAG-CCCAGCGAGGCGCGGACTTGGTCGCTAGGA-AGAGGAGCACGCGCCA-----GATCGCGCCCCCTTTCGGGCAGAATCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171351564 83 - 171630274 GCCGGGGCGCGGAG-C-CAGCGAGGC-CGGACCGCGGAGCGAGGA-AACGGACCCCGCGCCC-----GGT-GCGC-CCCTGTCGGGCAGAATCG
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1      121497 84 -    285216 GCCGGGGCGCGGAG-C-CAGCGAGGC-CGGACGGCGGAGCGAGGA-AACGGACCGCGCGCCA-----GGTCGCGC-CCCTCTCGGGCAGAATCC
i aotNan1.NW_018494050v1   I 51 I 61
s otoGar3.GL873742           1494010 93 -   2232465 ACTCCAGCGCTGAGACCCACCCAGGTGAGGACCGGAACGCGAGGACCGAGGAAGGGGCGCCAGCTGTGATCGCGCCCCCTTTC-GGCAGAATGC
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            183948 222 -    375362 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I

a score=434524.000000
s hg38.chr6_GL000254v2_alt    104660 83 +   4827813 GCTCCCGGTCCGGTCCCGA-TTGGCAGAAAACGATACGAGGG-----C--GGTATA-CACTCAACACGCG-CATGAACGATTCATCAAGCCCT
s panTro5.chr6              29084817 83 + 175400573 GCTCCCGGTCCGGTCCCGA-TTGGCAGAAAACGATACGAGGG-----C--GGTATA-CACTCAACACGCG-CATGAACGATTCATCAAGCCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29319201 83 + 173848474 GCTCCCGGTCCGGTCCCGA-TTGGCAGAAAACGATACGAGGG-----C--GGTATA-CACTCAACACGCG-CATGAACGATTCATCAAGCCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5119359 85 +   6154872 GCTCCCGGTCCGGTCCCGA-TTGGCAGAAAACGATACGAGGG-----C--GGTATACCACTCAACACGCGCCATGAACGATTCATCAAGCCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74121514 84 + 122973662 GCTCCCGGTCCGGTCCCGATTTGGCAGAAAACGATACGAGAG-----C--GGTATA-CAATCAACACGCG-CATGAGCGATTCATCAAGCCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29301543 84 + 172585720 GCTCCTGGTCCGGTCCCGATTCGGCAGAAAAAGATACGAGGG-----C--GGTATA-CATTCAACACCAG-CATGAACGATTCATCATGCCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28962108 84 - 170955103 GCTCCTGGTCCGGTCCCGATTCGGCAGAAAAAGATACGAGGG-----C--GGTATA-CATTCAACACCAG-CATGAACGATTCATCATGCCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1933473 84 -   2996164 GCTCCTGGTCCGGTCCCGATTCGGCAGAAAAAGATACGAGGG-----C--GGTATA-CATTCAACACCAG-CATGAACGATTCATCATGCCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1811045 84 -   2157725 GCTCCTGGTCCGTTCCCGATTCGGCAGAAAAAGATACGAGGG-----C--GGTATA-CATTCAACACGAG-CATGAACGATTCATCGTGCCCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28264620 84 -  71996105 GCTCCTGGTCCGGTCCCGATTCGGCAGAAAAAGATAGGAGGG-----C--GGTATA-CATTCAACACGAA-CATGAACGATTCATCAAGCCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1937272 83 +   2316924 GCT-CTGGTCCGGTCCCGATTCGGCAGAAAAAGATACGAGGG-----C--GGTATA-CATTCAACACGAA-CATGAACGATTCATCAAGCCCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1810381 89 -   3067355 GCTCTTGGTCCGGTCCCGATTCGGCAGAAAAAGATACGAGGGAGGTAC--GGTATA-CATTCAACACGAG-CATGAACGATTCATCAAGCCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171351647 61 - 171630274 ------------GCCCCGGCCCCGCGGATGACGTTCCGAGGG-----C---GCGTG-CGCTCAA-----------AGCGGTGCCGCAGGCCCC
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1494103 82 -   2232465 ---TCTCGCCTACCGAAGAATTCGCTGAAGGCGACGTGGAGG-----CCGGGACTA-AACTC-GCAGAAG-ACTTAGGGGTTCAGGAATCCCT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            183948 222 -    375362 I
e aotNan1.NW_018494050v1      121581 61 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I

a score=559539.000000
s hg38.chr6_GL000254v2_alt    104743 77 +   4827813 CCGTGTGCCGGGTCTGGCTCACCAACCTCATCCTCTGA-GCTCCGGGCTTCTGCCTCCCAGCCCAAGGAACCCACAGG
s panTro5.chr6              29084900 77 + 175400573 CCGTGTGCCGGGTCTGGCTCACCAACCTCATCCTCTGA-GCTCTGGGCTTCTGCCTCCCAGCCCAAGGAACCCACAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29319284 77 + 173848474 CCGTGTGCCGGGTCTGGCTCACCAACCTCATCCTCTGA-GCTCTGGGCTTCTGCCTCCCAGCCCAAGGAACCCACAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5119444 77 +   6154872 CCGTGTGCCGGGTCTGGCTCACCAACCTCATCCTCTGA-GCTCTGGGCTTCTGCCTCCCAGCCCAAGGAACCCACAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74121598 77 + 122973662 CCGTGCGCGGGGTCTGGCTCACCAACCTCATCCTCTGA-GCTCTGGGCTTCTGCCTCCCAGCCCAAGGAACCCAGAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29301627 77 + 172585720 CCGTGTGCCGGGTCTGGCTCACTAACCTCATTCTCTGA-GCTCTGGATTTCTGCCTCCCAGCCCAACGAACCCACAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28962192 77 - 170955103 CCGTGTGCCGGGTCTGGCTCACTAACCTCATTCTCTGA-GCTCTGGATTTCTGCCTCCCAGCCCAACGAACCCACAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1933557 77 -   2996164 CCGTGTGCCGGGTCTGGCTCACTAACCTCATCGTCTGA-GCTCTGGATTTCTGCCTCCCAGCCCAACGAACCCACAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1811129 77 -   2157725 CCGTGTGCCGGGTCTGGCTCACTAACCTCATCCTCTGA-GCTCTGGATTTCTGCCTCCCAGCCCAACGAACCCACAGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28264704 77 -  71996105 CCGTGTGCCGGGTCTGGCTCACTAACCTCATCCTCTGA-GCTCTGGATTTCTGCCTCCCAGCCCAACGAAACCACAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1937355 77 +   2316924 CCGTGTGCCGGGTCTGGCTCACTAACCTCATCCTCTGA-GCTCTGGATTTCTGCCTCCCAGCCCAACGAAACCACAGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1810470 77 -   3067355 CCATGTGCCGGGTCTGGCTCACTAATCTCATCCTCTGA-GCTCTGGACTTCTGCCTCCCAGCCCAACGAACCCACAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171351708 74 - 171630274 CCGCGTGCCGGC-CGCGTTCAGCACCCGC-TCCTCGGA-GCTCCGGGCTTC-GCCTCCCGGCCCAGGGCACCCGCCGC
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1      121642 75 -    285216 CCGCCTGCCGGG-CGGGCTCAGCACCCGCGTCCTCGGA-GCTCCGGGCTTC-GCCGCCCGGCCCAGGTCACCCGCCGC
i aotNan1.NW_018494050v1   I 61 C 0
s otoGar3.GL873742           1494185 78 -   2232465 CGGCGCGCCCTGTCTGGTTCACCAATCTCTTTCTCAGAGGCTCTAGGCCTCTCCCTTTCAGTCCAACAACCTGACAGA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            183948 222 -    375362 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I

a score=436383.000000
s hg38.chr6_GL000254v2_alt    104820 60 +   4827813 GTCTCAGCCAACACTGGGAGAGTAGCTTAAATGGGCAGAAAGACAAGATAAGGG-GATGTG
s panTro5.chr6              29084977 60 + 175400573 GTCTCAGCCAACACTGGGAGAGTAGCTTAAATGGGCAGAAAGACAAGATAAGGG-GATGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29319361 60 + 173848474 GTCTCAGCCAACACTGGGAGAGTAGCTTAAATGGGCAGAAAGACAAGATAAGGG-GATGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5119521 60 +   6154872 GTCTCAGCCAACACTAGGAGAGTAGCTTAAATGGGCAGAAAGACAAGATAAGGG-GATGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74121675 60 + 122973662 GTCTCAGCTAACACTGGGAGAGTAGCTTAAATGGGCAGAAAGACAAGATAAGGG-CATGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29301704 60 + 172585720 GTCTCAGCCAATATTTGGAGAGTAACTTAAATGGGCAGACAGACAAGATAAGGG-GATGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28962269 60 - 170955103 GTCTCAGCCAATATTTGGAGAGTAACTTAAATGGGCAGACAGACAAGATAAGGG-GATGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1933634 60 -   2996164 GTCTCAGCCAATATTTGGAGAGTAACTTAAATGGGCAGACAGACAAGATAAGGG-GATGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1811206 60 -   2157725 GTCTCAGCCAATATTTGGAGAGTAACTTAAATGGGCAGAAAGACAAGATAAGGG-GATGTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28264781 60 -  71996105 GTCTCAGCCAATATTTGGAGAGTAGCTTAAATGGGCAGAAAGACAAGATAAGGG-GATGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1937432 60 +   2316924 GTCTCAGCCAATATTTGGAGAGTAGCTTAGCTGGGCAGAAAGACAAGATAAGGG-GATGAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1810547 60 -   3067355 ATCTCAGCCAATATTTGGAGAGTAGCTTACACCGGCAGAAAGACAAGATAAGGG-GATGTG
i colAng1.NW_012115566v1   C 0 I 889
s calJac3.chr4             171351782 58 - 171630274 GCCTCCGCCGACGCCGC--GAGCCGCCCCATCGGGCAGCGGGACGAGATGGGGG-GGTGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            184170 61 -    375362 GCCTCCGCCAACGCCGCGAGAGCCACTCTAACGGGCAGCGAGAAAGGACGGGGGCCGAGGG
i saiBol1.JH378348         I 222 C 0
s aotNan1.NW_018494050v1      121717 60 -    285216 GCCTCCGCCAACGCCGCGAGAGCCGCTCAAACGGGCGGCGAGACGAGATGACGG-GATGTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1494263 53 -   2232465 ACCTC-GCTAACATTGGGGAAGTTGTTTTTATGGGCAAACAGACGAGT-------GATGTG
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I

a score=657131.000000
s hg38.chr6_GL000254v2_alt    104880 106 +   4827813 GTGAATAACAG--AATTATCCAATCCTATTATCAGCCCATCTGAGATTAAAGGGACGTCAATCATACTTGAATACTTTATTTAAAAA---AAACAGTTTGCAGAGGGTCGC
s panTro5.chr6              29085037 106 + 175400573 GTGAATAACAG--AATTATCCAATCCTATTATCAGCCCATCTGAGATTAAAGGGACGTCCATCATACTTGAATACTTCATTTAAAAA---AAACAGTTTGCAGAGGGTCGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29319421 104 + 173848474 GTGAATAACAG--AATTATCCAATCCTATTATCAGCCAATCTGAGATTAAAGGGACGTCCATCATACTTGAATACTTCATTTAAAAA---AA--AGTTTGCAGAGGGTCGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5119581 106 +   6154872 GTGAATAACAG--AATTATCCAATCCAATTATCAGCCCATCTGAGATTAAAGGGACGTCAATCATACTTGAATACTTTATTTAAAAA---AAACAGTTGGCAGAGGGTCGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74121735 106 + 122973662 GTGAATAATAG--AATTATCCAATCGTATTATCAGCCCATCTGAGATTAAAGAGACGTCAATCATACTTGAATACTTTATTTAAAAA---AAAAAGTTTGCAGAGGGTCGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29301764 109 + 172585720 ATGAATAATAG--AATTATCTAATCCTATTATCAGCCCAACTGATATTAAAGGGACGTCCATCACACTTGAATACTTTATTTAAAAAATAAAAAAGTTTGCAAAGGGTCGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28962329 109 - 170955103 ATGAATAATAG--AATTATCTAATCCTATTATCAGCCCAACTGATATTAAAGGGACGTCAATCACACTTGAATACTTTATTAAAAAAATAAAAAAGTTTGCAATGGGTCGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1933694 109 -   2996164 ATGAATAATAG--AATTATCTAATCCTATTATCAGCCCAACTGAGATTAAAGGGACGTCAATCACACTTGAATACTTTATTAAAAAAATAAAAAAGTTTGCAATGGGTCGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1811266 108 -   2157725 ATGAATAATAG--AAATATCCAATCCTATTATCAGCCCAACTGAGATTAAAGGGACGTCAATCACACTTGAATACTTTA-TAAAAAAATAAAAAAGTTTGCAAAGGGTGGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28264841 108 -  71996105 ATGAATAATAG--AAATATCCAATCCTATTATCAGCCCAACTGAGATTAAAGGGACGTCAATCACACTTGAATACTTTA-TAAAAAAATAAAAAAGTTTGCAAAGGGTCGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1937492 108 +   2316924 ATGAATAATAG--AAATATCCAATCCTATTATCAGCCCAACTGAGATTAAAGGGACGTCAATCACACTTGAATACTTTA-TAAAAAAATTAAAAAGTTTGCAAAGGGTCGC
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171351840 110 - 171630274 GTGGATAAGGGTTAATTATCCGGTCCTGTCGTCAGCCAGTGTCAGATTAGACGGACGTCAGTCATACTGGAATACTTAA-AAAAAAAAAAAAAAAGTCTTCAGAGGGTCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            184231 103 -    375362 GTGAATAACAACTAATTATCCAGTCCTGTCATCGGCCAGTCTCGGATTAGACCTACGTCAATCAAACGTGAATACTT--------AAAAAAAAAAGTCTGCAGAGGGTCGC
i saiBol1.JH378348         C 0 I 11530
s aotNan1.NW_018494050v1      121777  98 -    285216 CTGGATAACAATTAATTATCCAATCCTGTCATCAG---------GATTAGACGGACGTCAATCATACTTGAATACTT----AAAAAAAAAAAAAAGTCTGCAGAGGGTCCC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1494316  97 -   2232465 GTAAATAAAAG--GATTCCTCAATCCTTT-----GCCAATCAGAGATTAAAAGAACGTCAGTTATACTTGAACTAATTTTTAA-------AACCAGTCTGCAGAAGGTCAC
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e colAng1.NW_012115566v1     1810607 889 -   3067355 I

a score=1733608.000000
s hg38.chr6_GL000254v2_alt    104986 280 +   4827813 ATACAAGAAGAATAAA-GTGG--TTTTTTTTTTTTCAT-AAAAATGTGGATTCA-GGAGCATTACCGGAAATAATCAAGGAACGAGGAAGAGTGTGGCGAGAGAGTTCGGGTCCGGTATACCTCTCTCTCCGCACcacattct-tttgtagtacctgtgaaacattcatgaaaacggaccaca-----------gaagaaaacctcagtaagttccaaagtatagaaataacacaaacatcattctctgaccatca--tgcaat--aaaactagaaattgat---aaaataaaaaataaaagtc
s panTro5.chr6              29085143 280 + 175400573 ATACAAGAAGAATGAA-GTGG--TTTTTTTTTTTTCAT-AAAAATGTGGATTCA-GGAGCATTACCGGAAATAATCAAGGAACGAGGAAGAGTGTGGTGAGAGAGTTCGGGTCCGGTATACCTCTCTCTCCGCACcacattct-tttgtagtacctgtgaaacattcatgaaaacggaccaca-----------gaagaaaacctcagtaagttccaaagtatagaaataacacaaacatcattctctgaccatca--tgcaat--aaaactagaaattgat---aaaataaaaaataaaagtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29319525 279 + 173848474 ATACAAGAAGAATAAA-GTGG---TTTTTTTTTTTCAT-AAAAATGTGGATTCA-GGAGCATTACCGGAAATAATCAAGGAACGAGGAAGAGTGTGGTGAGAGAGTTCGGGTCCGGTATACCTCTCTCTCCGCACcacattct-tttgtagtacctgtgaaacattcatgaaaacggaccaca-----------gaagaaaacctcagtaagttccaaagtatagaaataacacaaacatcattctctgaccatca--tgcaat--aaaactagaaattgat---aaaataaaaaataaaagtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5119687 278 +   6154872 ATACAAGAAGAATAAA-GTG----TTTTTTTTTTTCAT-AAAAATGTGGATTCA-GGAGCATTAACGGAAATAATCAAGGAACGAGGAAGAGTACGGTGAGAGAGTTCGGGTCCGGTATACCTCTCTCTCCGCACcacattct-tttgtagtacctgtgaaacattcatgaaaacggaccaca-----------gaagaaaacctcagtaagttccaaagtatagaaatcacacaaacatcattctctgaccatca--tgcaat--aaaactagaaattgat---aaaataaaaaataaaagtc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74121841 277 + 122973662 ATACAAGAAGAATAAA-GTGG------GTTTTTTTCATAAAAAATGTGGATTCA-GGAGCACTACCGGAAATAATCAAGGAACGGGGAAGAGTGTGGTGAGAGAGTTTGGGTCCGGTATACCTCTCTCTCCGCACCACTTTCT-TTTGTAGTACCTGTGAAACATTCATGAAAACGGAGcaca-----------gaagaaaacttcagtaagttccaaagtatagaaataacacaaatatcattctctgaccatca--tgcaat--aaaactaggaattgat---aaaataaaaaataaaagtc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29301873 274 + 172585720 ATACAAGAAGAATAAA-GTG-------TGTTTTTTCAT-AAAACTGTGGATTCA-GGGGCACTACCGGAAATAATCAAGGAACGGGGAAGAGTGTGGTGAGAGTGTTTGGGTCCAGTATACCTCTGTCTCCGCACcacattct-tttgtagtacctgtgaaacatacatgaaaatggaccaca-----------gaagaaaacctccgtaagttccaaagcatattagttaca-aaacatcattctctgaccatca--tgcaat--aaaactagaaattgat---aaaataaaaaataaaagtc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28962438 275 - 170955103 ATACAAGAAGAATAAA-GTG-------TGTTTTTTCAT-AAAACTGTGGATTCA-GGGGCACTACCGGAAATAATCAAGGAACGGGGAAGAGTGTGGTGAGAGTGTTTGGGTCCAGTATACCTCTATCTCCGCACcacattct-tttgtagtacctgtgaaacatacatgaaaatggaccaca-----------gaagaaaacctccgtaagttccaaagcatattagttacacaaacatcattctctgaccatca--tgcaat--aaaactagaaattgat---aaaataaaaaataaaagtc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1933803 275 -   2996164 ATACAAGAAGAATAAA-GTG-------TGTTTTTTCAT-AAAACTGTGGATTCA-GGGGCACTACCGGAAATAATCAAGGAACGGGGAAGAGTGTGGTGAGAGTGTTTCGGTCCAGTATACCTCTGTCTCCGCACcacattct-tttgtagtacctgtgaaacatacatgaaaatggaccaca-----------gaagaaaacctccgtaagttccaaagcatattagttacacaaacatcattctctgaccatca--tgcaat--aaaactagaaattgat---aaaataaaaaataaaagtc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1811374 277 -   2157725 GTACAAGAAGAATAAA-GTG-------GGTTTTTTCAT-AAAAATGTGGATTCA-GGGGCACTACCGGAAATAATCAAGGAACGGGGAAGAGTGTGGTGAGAGTGTTTGGGTCCAGTATACCTCTGTCTCCGCACcacattct-tttgtagtacctgtgaaacatacatgaaaatggaccaca-----------gaagaaaacctccgtaagttccaaagcatattagttacacaaacatcattctctgaccatca--tgcaataaaaaactagaaattgat---aaaataaaaaataaaagtc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28264949 273 -  71996105 ATACAAGAAGAATAAA-GTG-------GGTTTTTTCAT-AAAAATGTGGATTCA-GGGGCACTACCGGAAATAATCAAGGAACGGGGAGGAGTGTGGTGAGAGAGTTTGGGTCCAGTATACCTCTGTCTCCGCACcacattct-tttgtagtacctgtgaaacatacatgaaaatggaccaca-----------gaagaaaacctccgtaagttccaaagcaaattagttacacaaacatcattctctgaccatca--tgcaat--aaaactagaaattgat---aaaataaaaaat--aagtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1937600 277 +   2316924 GTACAAGAAGAATAAA-GTG-------GGTTTTTTCAT-AAAAATGTGGATTCA-GGGGCACTACCGGAAATAATCAAGGAACGGGGAAGAGTGTGGTGAGAGAGTTTGGGTCCAGTATACCTCTGTCTCCGCACcacattct-tttgtagtacctgtgaaacatacatgaaaatggaccaca-----------gaagaaaacctccgtaagttccaaagcatattaattacacaaacatcattatctgaccatca--tgcaataaaaaactagaaattgat---aaaataaaaaataaaagtc
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171351950 272 - 171630274 AGACAGGAAGAATAAC-GTG-------GGTTTTTTCAT-TAAAATGTGGATTCG-GGGGCACCACC-GAAATAATGAAGGATCGGGGAAGAGCGTGGTGAGGGCGTCTCCATCCCGAGTGCCTCCCTCt-----tcacgttct-tttctagcacgtgtgaaacatttatgaaaactgaccacatcttaagctacgaagaaaacctcagtaagttccaaagtcgagaaataacccaaataccattctctgaccatca--agcaat--aaaactagaagctg--------ataaaaaataaaa---
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1      121875 281 -    285216 AGACAAGAAGAAGAAC-GTG-------GGTTTTTTCAT-TAAAATGTGGATTCA-GGGGCACCACCGGAAAGAATGAAGGAACGGGGAAGAGCGTGGTGAGGGCGTCTCGGTCCCGCGTGCCTCCCTCTCCGCACcacgttct-tttctagcacatgtgaaacatttctgaaaacggaccacatcttaagctacgaagaaaagctcaataagttccaaagtcgagaaataacccaaataccattatctgaccatca--tgcaat--aaaactacaaactg--------ataaaaaataaaactc
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1494413 296 -   2232465 ATACGAAAAGAATAAACATGGTTTTTTTTTTTTTTAAC-AGAAATAGGGATCCCTAGACCGCTACCAGAAATAATCAAGGAG-ACGGATTAGGGTCCTGAGAATGTCTGGGCGCCGTATGCCTTT-TCTAC---Ccacactccgtttgtagcacctatgaaacattcatgaaaactgaccacaacttaagctacgaagaaaatctcaacaaattccaaagaatagaaagaatgcaaacaacattctttgactattatctgcaat--ggtactataaattaatgccaaaattaaaaacaaaaGTC
i otoGar3.GL873742         C 0 I 15037
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e colAng1.NW_012115566v1     1810607 889 -   3067355 I

a score=1150492.000000
s hg38.chr6_GL000254v2_alt    105266 183 +   4827813 acttccacctgaaaattttaaagcatgctataatacaactcgagtcaagaaggaaatacaaattttaattacataa-tttcttgaaagggacaaaagtgcaaatgtgacatagaatctgtgagatagagctaaagcatttatcagaaggaaatttatttcctcacatacctatatcgat---aacaa
s panTro5.chr6              29085423 186 + 175400573 acgtccacctgaaaattttaaagcatgctataatacaactcgagtcaagaaggaaatacaaattttaattacataa-tttcttgaaaaggacaaaagtgcaaatgtgacatagaatctgtgagatagagctaaagcatttatcagaaggaaatttatttcctgacatacctatatcgataacaacaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29319804 186 + 173848474 acgtccacctgaaaattttaaagcatgctataatacaactcgagtcaagaaggaaatacaaattttaattacataa-tttcttgaaaaggacaaaagtgcaaatgtgacatagaatctgtgagatagagctaaagcatttatcagaaggaaatttatttcctcacatacctatatcgataacaacaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5119965 186 +   6154872 acttccacctgaaaatgttaaagcatgctataatacaactcgagtcaagaaggaaaaacaaattttaattacataa-tttcttgaaaaggacaaaagtgcaaatgtgacatagaatctgtgagatagagctaaagcatttatcagaaggaaatttatttcctcatatacctatatcgataacaacaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74122118 186 + 122973662 acttccaccggaaaattttaaagcatgctataatacaactcgagtcaagaaggaaatacaaattttaattacatga-tttcttgaaaaggacaaaagtgcaaatgtgacatagaatctgtgagacagagctaaagaatttatcagaaggaaatttatttcctcacatacttacatcgataacaacaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29302147 187 + 172585720 ccttctatctgaaaatgttaaagcatgctataatacaactcgagtcaagaaggaaatacaaattttaattacacaatttttttgaaaaggacaaaagtgcaaatgtgacatagaatctgtgagatagagctgaagtatttatcagaaggaaatctattccctcacatacctatatcgataacaacga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28962713 187 - 170955103 ccttctatctgaaaatgttaaagcatgctataatacaactcgagtcaagaaggaaatacaaattttaattacacaatttttttgaaaaggacaaaagtgcaaatgtgacatagaatctgtgagatagagctgaagtatttatcagaaggaaatctattccctcacatacctatatcgataacaacga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1934078 180 -   2996164 ccttctatctgaaaatgttaaagc-------aatacaactcgagtcaagaaggaaatacaaattttaattacacagtttttttgaaaaggacaaaagtgcaaatgtgacatacaatctgtgagatagagctgaagtatttatcagaaggaaatctattccctcacatacctatatcgataacaacga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1811651 186 -   2157725 ccttctacctgaaaatgttaaagcatgctataatacaactcgagtcaagaaggaaatacaaattttaattacacaa-ttttttgaaaaggacaaaagtgcaaatgtgacatagaatctgtgagatagagctaaagcatttatcagaaggaaatttattccctcacatacctatatcgataacaacga
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28265222 186 -  71996105 tcttctacctgaaaatgttaaagcatgctgtaatacaacttgagtcaagaaggaaatacaaattttaattacacaa-ttttttgaaaaggacaaaagtgcaaatgtgacatagaatctgtgagatagagctaaagcatttaccagaaggaaatttagtccctcacatacctatatcgataacaacga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1937877 186 +   2316924 ccttctacctgaaaatgttaaagcatgctataatacaactcgagtcaagaaggaaatacaaattttaattacacaa-ttttttgaaaaggacaaaagtgcaaatgtgacatagaatctgtgagatagagctaaagcatttatcagaaggaaatttattccctcacatacctatatcgataacaacga
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171352222 181 - 171630274 -cttccacctgaaaaatgtaaagcgtggtataaaaccactcgggtcaagaaggaaatacaaattttaaatacataa-tttcttgaagaggacgaaagtgcaaatgtgacatagaatctgtgagatagagtt-aagcattcatcagaagaagattgatgccctcacatacctataccgttaacag---
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1      122156 183 -    285216 ccttccacctgaaaaatgtaaagcgtggtataaaacaactcgggtcaagaaggaaatacaaattttaattacataa-tttcttgaagaggacgaaagtgcgaatgtgacatagaatctgtgagatagagctgaagcattcatcagaagaaaatttattccctcacatacctatatcgttaacaa---
i aotNan1.NW_018494050v1   C 0 I 64
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e colAng1.NW_012115566v1     1810607 889 -   3067355 I

a score=211660.000000
s hg38.chr6_GL000254v2_alt    105449 47 +   4827813 aaaataacaaatgaatcaaacacagctcaagatgctactaaatgaac
s panTro5.chr6              29085609 47 + 175400573 aaaataacaaatgaatcaaacacagctcaagatgctactaaatgaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29319990 47 + 173848474 aaaataacaaatgaatcaaacacagctcaagatgctactaaatgaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5120151 47 +   6154872 aaaataacaaatgaatcaaacacagctcaagatgctactaaatgaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74122304 47 + 122973662 aaaataacaaaccaatcaaacacagctcaagatgctactaaatgaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29302334 41 + 172585720 aaaacaacaaatgaatcaaacac------agatgctattaaatgaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28962900 41 - 170955103 aaaacaacaaatgaatcaaacac------agatgctattaaatgaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1934258 47 -   2996164 aaaacaacaaatgaatcaaacacagctcaagatgctattaaatgaac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1811837 47 -   2157725 aaaacaacaaatgaatcaaacacagctcaagatgctattaaatgaac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28265408 47 -  71996105 aaaacaacaaatgaatcaaacacagctcaagatgctattaaatgaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1938063 47 +   2316924 aaaacaacaaatgaatcaaacacagctcaagatgctattaaatgaac
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171352403 27 - 171630274 aaaacgacaaat-----------------aaatgctagaaaatc---
i calJac3.chr4             C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      122339 64 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e colAng1.NW_012115566v1     1810607 889 -   3067355 I

a score=1118514.000000
s hg38.chr6_GL000254v2_alt    105496 174 +   4827813 aacaaaataaaccaaaagaatgaggaaggaagggtt-gtaaggacaaattcagagaatgagttagaaacaaagtataactaataaagatac--aaaaaaggtggatatttgaaagtcaacaaaatagacaaacctctagccaacaaagagaaaattagtgcaaatacacaaaattag
s panTro5.chr6              29085656 174 + 175400573 aacaaaataaaccaaaagaatgaggaaggaagggtt-gtaaggacaaattcagagaatgagttagaaacaaagtataactaataaagatac--aaaaaagctggatatttgaaagtcaacaaaatagacaaacctctagccaacaaagagaaaataagtacaaatacacaaaattag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29320037 174 + 173848474 aacaaaataaaccaaaagaatgaggaaggaagggtt-gtaaggacaaattcagagaatgagttagaaacaaagtataactaataaagatac--aaaaaagctggatatttgaaagtcaacaaaatagacaaacctctagccaacaaagagaaaataagtgcaaatacacaaaattag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5120198 174 +   6154872 aacaaaataaaccagaagaatgaggaaggaagggtt-gtaaggacaaattcagagaatgagttagaaacaaagtataactaataaagatac--aaaaaagctggatatttgaaagtcaacaaaatagacaaacctctagccaacaaagagaaaataagtgcaaatacacaaaattag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74122351 174 + 122973662 aacaaaataaaccaaaagaatgaggaaggaagggtt-atagggacaaattcagagaatgagttagaaacaaagtagaactaataaagatac--aaaaaagctggatatttgaaagtcagcaaaatagacaaacctctagccaacaaagagaaaataagtgcaaatacacaaaattag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29302375 174 + 172585720 aacaaaataaaacaaaagcatgaggaaggaagggtt-ataaggacaaattcagagaatgagttagaaacaaagtagaactaataaagatac--aaaaaagctggatatttgaaagtcaacaaaatagacaaacctctagccaacaaagagaaaataagtgcaaatacacaaaattag
i rheMac8.chr4             C 0 I 4
s macFas5.chr4              28962941 174 - 170955103 aacaaaataaaacaaaagcatgaggaaggaagggtt-ataaggacaaattcagagaatgagttagaaacaaagtagaactaataaagatac--aaaaaagctggatatttgaaagtcaacaaaatagacaaacctctagccaacaaagagaaaataagtgcaaatacacaaaattag
i macFas5.chr4             C 0 I 4
s macNem1.NW_012011356v1     1934305 174 -   2996164 aacaaaataaaacaaaagcatgaggaaggaagggtt-ataaggacaaattcagagaatgacttagaaacaaagtagaactaataaagatac--aaaacagctggatatttgaaagtcaacaaaatagacaaacctctagccaacaaagagaaaataagtgcaaatacacaaaattag
i macNem1.NW_012011356v1   C 0 I 4
s cerAty1.NW_012001495v1     1811884 173 -   2157725 aacaaaataaaacaaaagcatgaggaaggaagggtt-ataaggacaaattcagagaatgagttagaaacaaagtagaactaataaagatac--aaaa-agttggatatttgaaagtcaacaaaatagacaaacctctagccaacaaagagaaaataagtgcaaatatacaaaattag
i cerAty1.NW_012001495v1   C 0 I 4
s chlSab2.chr17             28265455 172 -  71996105 aacaaaataaaataaaagcatgaggaaggaagggtt-ataaggacaaactc--agaatgagttagaaacaaagtagaactaataaagatac--aaaaaagctggatatttgaaagtcaacaaaatagacaaacctctagccaacaaagagaaaataagtgcaaatacacaaaattag
i chlSab2.chr17            C 0 I 4
s manLeu1.NW_012104165v1     1938110 173 +   2316924 aacaaaataaaacaaaagcatgaggaaggaagggtt-ataaggacaaattcagagaatgagttagaaacaaagtagaactaataaagatac---aaaaagctggatatttgaaagtcaacaaaatagacaaacctctagccaacaaagagaaaataagtgcaaatatacaaaattag
i manLeu1.NW_012104165v1   C 0 I 4
s calJac3.chr4             171352430 177 - 171630274 aacaaaataaaccaaaagaatgcagaaggaaggattaataaggacaaattcagccaatgagttagaaacacagtaccactaataaagaaacaaaaaaaagctggagatctgaaagtcaataaaataagcaaacctctagccaacaaagagaaagtaagtgcaaatacacaaaatttg
i calJac3.chr4             C 0 I 4
s aotNan1.NW_018494050v1      122403 174 -    285216 aacaaaataaaccaaaagaatgcagaaggaagggttaataaggacaaattcagccaatgagttagaagcacagtagaactaataaagaaac--aaaaaagctggagatttgaaagtcaa-ataataagcaaacctctaggcaacaaagagaaagtaagtgcaaatacacaaaatttg
i aotNan1.NW_018494050v1   I 64 I 4
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e colAng1.NW_012115566v1     1810607 889 -   3067355 I

a score=1290574.000000
s hg38.chr6_GL000254v2_alt    105670 175 +   4827813 aactggaggaaataatcatcaacacagaagacctttttt-gaaatcatcagagataacataacacaactagcaaataactggcaaacttagtggattttttagacaaatgtagcatactcaaactaacccttgtagagacagaaagtctaaacagaccagtt----------------------aagaaaaatagttt
s panTro5.chr6              29085830 175 + 175400573 aactggaggaaataatcatcaacacagaagatctttttt-gaaatcatcagagataacataacacaactagcaaataactggcaaacttagtggattttttagacaaatgtagcatactcagactaacccttgtagagacagaaagtctaaacagaccagtt----------------------aagaaaaatagttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29320211 175 + 173848474 aactggaggaaataatcatcaacacagaagacctttttt-gaaatcatcagagataacataacacaactagcaaataactggcaaacttagtggattttttagacaaatgtagcatactcaaactaacccttgtagagacagaaagtctaaacagaccagtt----------------------aagaaaaatagttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5120372 175 +   6154872 aactggaggaaataatcatcaacacagaagacctttttt-gaaatcatcagagataacataacacaactagcaaataactggcaaacttagtggattttttagacaaatgtagcatactcaaactaacccttgtagagacagaaagtctaaacagaccagtt----------------------aagaaaaatagttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74122525 175 + 122973662 aactggaggaaataatcatcaacacagaagacctttttt-gaaatcatcagagataacataacacaactagcaaataactggcaaacttagtggattttgtagataaatgtagcatactcaaactaacccttgtagagacagaaagtctaaagagaccagtt----------------------gagaaaaatagttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29302553 172 + 172585720 aactgaaggaaata---atcaacacagaagacctttttt-gaaatcatcagagataatataacacaactagcaaataactggcaaacttgatggattttgtagataaatgtagcatactcaaattaacccttgtagagacagaaagtctaaacagaccagtt----------------------aagaaaaatagttt
i rheMac8.chr4             I 4 C 0
s macFas5.chr4              28963119 172 - 170955103 aactgaaggaaata---atcaacacagaagacctttttt-gaaatcatcagagataatataacacaactagcaaataactggcaaacttgatggattttgtagataaatgtagcatactcaaattaacccttgtagagacagaaagtctaaacagaccagtt----------------------aagaaaaatagttt
i macFas5.chr4             I 4 I 310
s macNem1.NW_012011356v1     1934483 172 -   2996164 aactgaaggaaata---atcaacacagaagacctttttt-gaaatcatcagagataatataacacaactagcaaataactggcaaacttgatggattttgtagataaatgtagcatactcaaattaacccttgtagagacagaaagtctaaacagaccagtt----------------------aagaaaaatagttt
i macNem1.NW_012011356v1   I 4 C 0
s cerAty1.NW_012001495v1     1812061 175 -   2157725 aactgaaggaaataatcatcaacacagaagaccgttttt-gaactcaccagagataatacaacacaactagcaaataactggcaaacttggtggattttgtagataaatgtagcatactcaaattaacccttgtagagacagaaagtctaaacagaccagtt----------------------aagaaaaatagttt
i cerAty1.NW_012001495v1   I 4 C 0
s chlSab2.chr17             28265631 175 -  71996105 aactgaaggaaataatcatcaacacagaagacttttttt-gaaatcatcagagataatataacacaaccagcaaataactggcaaacttggtggattttgtagataaatgtagcatactcaaattaacccttgtagagacagaaagtctaaacagaccagtt----------------------aagaaaaatagttt
i chlSab2.chr17            I 4 C 0
s manLeu1.NW_012104165v1     1938287 175 +   2316924 aactgaaggaaataatcatcaacacagaagaccgttttt-gaactcatcagagataatacaacacaactagcaaataactggcaaacttggtggattttgtagataaatgtagcatactcaaattaacccttgtagagacagaaagtctaaacagaccagtt----------------------aagaaaaatagttt
i manLeu1.NW_012104165v1   I 4 C 0
s colAng1.NW_012115566v1     1811496 175 -   3067355 AACTGAAGGAAATAATCATCAACACAGAAGACCTTTTTT-GAAATCATCAGAGATAATATAACACAACTAGCAAATAACTGGCAAACTTGGTGGATTTTGtagataaatgtagcatactcaaattaagccttgtagagacagaaagtctaaacagaccagtt----------------------aagaaaaatagttt
i colAng1.NW_012115566v1   I 889 C 0
s calJac3.chr4             171352611 193 - 171630274 aactggaggaaataatcatccacccagaagaccttttttcaaaatcattacagataacataacacaactagcaaatgactggcagatttagtcgattttgtagataaatgtagtatacccaaattaacccttgcagagacagagagtcta-----accagtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagctt
i calJac3.chr4             I 4 C 0
s aotNan1.NW_018494050v1      122581 173 -    285216 aactggaggaaataataatcaacccagaataccttttttcaaaatcattagagataacataacacaactagcaaatgactggcaaacttagtggattttgtagataaatgtagcttacccaaattaacccttgtagagacagagagtcta-----accagtt--------------------aaaaaaaaaagagctt
i aotNan1.NW_018494050v1   I 4 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I

a score=-4943.000000
s hg38.chr6_GL000254v2_alt    105845 1 +   4827813 -a
s panTro5.chr6              29086005 1 + 175400573 -a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29320386 1 + 173848474 -a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5120547 1 +   6154872 -a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74122700 1 + 122973662 -a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29302725 1 + 172585720 -a
i rheMac8.chr4             C 0 I 7098
s macFas5.chr4              28963601 1 - 170955103 -a
i macFas5.chr4             I 310 C 0
s macNem1.NW_012011356v1     1934655 1 -   2996164 -a
i macNem1.NW_012011356v1   C 0 I 7126
s cerAty1.NW_012001495v1     1812236 1 -   2157725 -a
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28265806 1 -  71996105 -a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1938462 1 +   2316924 -a
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1811671 1 -   3067355 -a
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171352804 1 - 171630274 t-
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1      122754 1 -    285216 t-
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I

a score=4506484.000000
s hg38.chr6_GL000254v2_alt    105846 859 +   4827813 acaggcatactcaataaaaagggcaccaagctcaaatacttt--cataaagaaatcctaccaaactgtcaaatatcaaaaaatcatgatgctacttaaattattcgaagca-tagacactagcactttataaagttagtat-------------aacatttcagtttgcactaaaaatgaaaactacaggtcaatttcacatatgaaatatatgaaatgtaatgcctaaatcttaaataaaatttatagcaaacagaatacaatagcacatttaaaacagtaatacaggatgtccaagtagggtttattccaggagtgtaaagatcactcattattaggaaagatattaatataatccattgtaATtggaactggaggtcattatgttaaataaagtaagcgagaaacagaaagacaaatttcacatcttttcagtcatatgtgggagtttaaaaagttgatctcatggaggtagagagtagaatcatagataccagggtcagggaagggtgtgtgcattggagctgcgtacaaaggcaggttggtcaatgtgtacaaacatataattagatagaaggtataggttctttttttttttttt---tttttgagttggagtctggctgtcttgcccaggctggagtgcagtggcaccatcccagctcactgcaacctccacctcccaggttcaagtgattctcctgcctcagtctcctgagcagctgggattacaggtgcct-gccaccacagccagcCtctaatgttgatagtagagtagggtgactatagttagcaacaatgtattgtatatttcaaagtagctagaagagataacctgaaa-ccaacacatagaaatgataaatactcaaagtgatgga
s panTro5.chr6              29086006 867 + 175400573 acaggcatactcaataaaaagggcaccaagctcaaatacttt--cataaagaaatcctaccaaactgtcaaatatcaaaaaatcatgatgctacttaaattattcgaagca-tagacactagcactttataaagttagtataacattgatcacaaacatttcagtttgcactaaaaatgaaaactacaggtcaatttcacatacgaaatatatgaaatgtaatgcctaaatcttaaataaaatttatagcaaacagaatccaatagcacatttaaaacagtaatacaggatgtccaagtagggtttattccaggagtgtaaagatcactcattattaggaaagatattaatataatccatTGTAATtggaactggaggtcattatgttaaataaagtaagcgagaaacagaaagacaaatttcacatcttttcagtcatatgtgggagtttaaaaagttgatctcatggaggtagagagtagaatcatagataccagggtcagggaagggtgtgtgcattggagctgcgtacaaaggcaggttggtcaatgtgtacaaacatataattagatagaaggtataggttc-----ttttttttt---tttttgagttggagtctggctgtcttgcccaggctggagtgcagtggtaccatcccagctcactgcaacctccacctcccaggttcaagtgattctcctgcctcagtctcctgagcagctgggattacaggtgcct-gccaccacagccagcCtctaatgttgatagtagagtagggcgactatagttagcaacaatgtattgtatatttcaaagtagctagaagagataacctgaaa-ccaacacatagaaatgataaatactcaaagtgatgga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29320387 867 + 173848474 acaggcatactcaataaaaagggcaccaagctcaaatacttt--cataaagaaatcctaccaaactgtcaaatatcaaaaaatcatgatgctacttaaattattcgaagca-tagacactagcactttataaagttagtataacattgatcacaaacatttcagtttgcactaaaaatgaaaactacaggtcaatttcacatacgaaatatatgaaatgtaatgcctaaatcttaaataaaatttatagcaaacagaatccaatagcacatttaaaacagtaatacaggatgtccaagtagggtttattccaggagtgtaaagatcactcattattaggaaagatattaatataatccatTGTAATtggaactggaggtcattatgttaaataaagtaagcgagaaacagaaagacaaatttcacatcttttcagtcatatgtgggagtttaaaaagttgatctcatggaggtagagagtagaatcatagataccagggtcagggaagggtgtgtgcattggagctgcgtacaaaggcaggttggtcaatgtgtacaaacatataattagatagaaggtataggttc-----ttttttttt---tttgtgagttggagtctggctgtcttgcccaggctggagtgcagtggtaccatcccagctcactgcaacctccacctcccaggttcaagtgattctcctgcctcagtctcctgagcagctgggattacaggtgcct-gccaccacagccagcCtctaatgttgatagtagagtagggggactatagttagcaacaatgtattgtatatttcaaagtagctagaagagataacctgaaa-ccaacacatagaaatgataaatactcaaagtgatgga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5120548 863 +   6154872 acaggcatactcaataaaaagggcaccaagctcaaatacttt--cataaagaaatcctaccaaactgtcaaatatcaaaaaatcatgatgctacttaaattattcgaagca-tagacactagcactttataaagttagtataacattgatcacaaacatttcagtttgcactaaaaatgaaaattacaggtcaatttcacatatgaaatatatgaaatgtaatgcctaaatcttaaataaaatttatagcaaacagaatacaatagcacatttaaaacagtaatacaggatgtccaagtagggtttattccaggagtgtaaagatcactcattattaggaaagatattaatataatccattgtaATtggaactggaggtcattatgttaaataaagtaagcgagaaacagaaagacaaatttcacatcttttcagtcatatgtgggagtttaaaaagttgatctcatggaggtagagagtagaatcatagataccagggtcagggaagggtgtgtgcattggagctgcgtacaaaggcaagttggtcaatgtgtacaaacatataattagatagaaggtataggttt---------ttttt---tttttgagttggagtctggctgtcttgcccaggctggagtgcagtggcaccatcccagctcactgcaacctccacctcccaggttcaagtgattctcctgcctcagtctcctgagcagctgggattacaggtgcct-gccaccacagccaggctctaatgttgatagtagagtagggtgactatagttagcaacaatgtgttgtatatttcaaagtagctagaagagataacctgaaa-ccaacacatagacatgataaatactcaaagtgatgga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74122701 867 + 122973662 acaggcatactcaataaaaagggcaccaagctcaaatacttt--cataaagaaattctaccaaactgtcaaatatcaaaaaatcatgatgctatttaaattattcaaagca-tagaaactagcattttataaagttagtataacatcaatcacaaacatttcagtttacactaaaaatgaaaactacaggtcaatttcacatatgaaatatatgaaatgtaatgcctaaatcttaaataaaattaatagcaaacagaatccaatagcacatttaaaacaataatacaggatgtccaagtggggtttattccaggaatgtaaagatcactcaTTATTAGTAAAGATATTAATATAATCCATTGTAATtggcactggaagtcattatgttaaataaagtaagtgagaaacagaaagacaaatttcgcatcttttcagtcatatgtgggagtttaaaaagttgatctcatggaggtagagagtagaatcatagataccagggtcagggaagggtgtgtgcattggagctgcatacaaagagaggttggtcaatgggtacaaacatagaattagatacaaggtataggttc-----ttttttttt---tttttgagttggagtctgactctcttgctcaggctggagtgcagtggtaccatcccagctcactgcaacctctgcctcccaggttcaagtgattctcctgcctcagcctccggagtagctgggattagaggtgcctagccaccatagccagcCtctaatgttgatagtagagtagggtgactatagttagcaacagtgtaatctatatttcaaagtagctagaagacagaacctg-aa-ccaacagaaagaaatgataaatactcaaagcgatgga
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28963602 871 - 170955103 acaggcatactcaataaaaagggcaccaagctcaaatacttt--cataaagaaattctaccaaactgtcaaatatcaaaaaatcacaatgctacttaaattatttgaagca-tagaaaccagtattttataaagttagtataacattgatcacaaacatttcagtttgcactaaaaatgcaaactacaggtcaatttcacatatgaaatatatgaaatgtaatgcctaaatcttaaataaaattaatagtaaacagaatccaacagcacatttaaaacaataataca-gatgtccaagtggggtttattccagacatgtaaagATCACTAATTATTAGGAAAGATGTTAATATAATCCATTGTAATtggaactggaggtcattatgttaagtaaagtaagtgagaaacagaaagacaaatttcacatcttttcagtcatatgtgggagttaaaaatgttgatctcacggaggtagagagtagaatcatagacaccagggtcagggaagggtgtgtgcgttggagctgcgtacaaagagaggttggtcaatgggtacaaacatataattagatagaaggcataggttctttttttttttttt---tttttgagttggagtctggctctcttgcccaggctggagtgcagtagcaccatcccagctcactgcaacctctacctcccaggttcaagtgattcttctgcctcagcctccggagtagctgggattagaggtgcct-gccaccacagccagcCtctaatgttgatagtagagtagggtgactgtagttagcaacaatgtattgtatatttcaaagtagctagaagagagaacctgaaa-ccaacacacagaaatgataaatactcaaagtgatgga
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1812237 839 -   2157725 acaggcatactcaataaaaagggcaccaagctcaaatacttt--cataaagaaattctaccaaactgtcaaatatcaaaaaatcacaatgttacttaaattatttgaagca-tagaaaccagcattttataaagttagtataacattgatcacaaacatttcagtttgcactaaaaatgcaaactacaggtcaatttcatatatgaaatatatgaaatgtaatgcctaaatcttaaataaaattaatagtaaacagaatccaacagcacatttaaaacaataataca-gatgtccaagtggggtttattccagacatgtaaagatcactaattattaggaaagatattaatataatccattgtaATtggaactggaggtcattatgttaagtaaagtaagtgagaaacagaaagacaaatttcacatcttttcagtcatatgtgggagttaaaaatgttgatctcatggaggtagagagtagaatcatagacaccagggtcagggaagggtgtgtgcgttggagctgcgtacaaagagaggttggtcaatgggtacaaacatataattagatagaaggcataggttc-------ttttttt---tttttgagttggagtctggctctcttgcccaggctggagtgcagtggcaccat-------------------------ccaggttcaagtgattcttctgcctcagcctcccgagtagctgagatcagaggtgcct-gccaccacagccagcCtctaatgttgatagtagagtagggtgactgtagttagcaacaatgtattgtatatttcaaagtagctagaagacagaacctgaaa-ccaacacacagaaatgataaatactcaaagtgatgga
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28265807 862 -  71996105 acaggcatactcaataaaaagggcaccaagctcaaatacttc--cataaagaaattcttccaaactgtcaaatatcaaaaaatcatgatgctacttaaattattcgaagca-tagaaaccagcattttataaagttagtataacattgatcacaaacatttcagtttgcactaaaaatgcaaactacaggtcaatttcacatatgaaatatatgaaatgtaatgcctaaatctgaaataaaattaatagtaaac--aatccaacagcacatttaaaacaataataca-gatgtccaagtggggtttattccaggcatgtaaagatcactaattattaggaaagatattaatataatccaTTGTAATtggaactggaggtcattatgttaagtaaagtaagtgagaaacagaaagacaaatttcacatcttttcagtcatatgtgggagttaaaaatgttgatctcatggaggtagagagtagaatcatagacaccagggtcagggaagggtgtgtgcgttggagctgcgtacaaagagaggttggtcaatgggtacaaacatataattagatagaaggcataggttc-------ttttttt---tttttgagttggagtctggctctcttgcccaggctggagtgcagtggcaccatcccagctcactgcaacctctacctcccaggttcaagtgattcttctgcctcagcctcccgagtagctgggattcgaggtgcct-gccaccacagccagcCtctaatgttgatagtagagtagggtgactgtagttagcaacagtgtattgtgtatttcaaagtagctagaagagagaacctgaaa-ccaacacacagaaatgataaatactcaaagtgatgga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1938463 838 +   2316924 acaggcatactcaataaaaagggcaccaagctcaaatacttt--cataaagaaattctcccaaactgtcaaatatcaaaaaatcatgatgctacttaaattattcgaagca-tagaaaccagtattttataaagttagtataacattgatcacaaacatttcagtttgcactaaaaatgcaaactacaggtcaatttcacatatgaaatatatgaaatgtaatgcctaaatcttaaataaaattaatagtaaac--aatccaacagcacatttaaaacaataataca-gatgtccaagtggggtttattccaggcatgtaaagatcactaattattaggaaagatattaatataatccattgtaATtggaactggaggtcattatgttaagtaaagtaagtgagaaacagaaagacaaatttcacatcttttcagtcatatgtgggagttaaaaatgttgatctcatggagatagagagtagaatcatagacaccagggtcagggaagggtgtgtgcgttggagctgcgtacaaagagaggttggtcaatgggtacaaacatataattagatagaaggcataggttc------tttttttt---tttttgagttggagtctggctctcctgcccaggctggagtgcagtggcaccat-------------------------ccaggttcaagtgattcttctgcctcagcctcccgagtagctgagatcagaggtgcct-gccaccacagccagcCtctaatgttgatagtagagtagggtgactgtagttagcaacaatgtattgtatatttcaaagtagctggaagagagaacctgaaa-ccaacacacagaaatgataaatactcaaagtgatgga
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1811672 865 -   3067355 acaggcatactcaataaaaagggcaccaagctc---tacttt--cataaagaaattctaccaaactgtcaaatatcaaaaaatcatcatgctacttaaattattcgaagcattaagaaacagcattttataaagttagtataacattgatcacaaacatttcagtttgcactaaaaatgcaaactacaggtcaatttcacatatgaaatatatgaaatgtaatgcctaaatcttaaataaaattaatagtaaacagaatctaacagcacatttaaaacaataatacaggatgtccaagtggggtttattccaggcatgtaaagatcactcattattaggaaa-acattaatataatccattgtaATtggaactggaggtcattatgttaagtaaagtaagtgagaaacagaaagacaaatttcacatcttttcagtcatatgtgggagttaaaaatgttgatctcatggaggtagagcgcagaatcatagacaccagggtcaggcaagggtgtgtgcgttggagctgcgtagaaggagaggttggtcaatgggtacaaac--ataattagatagaaggtataagttc--ttttttttcttt---tttttgagtgggagtctggctctcttgcccaggctggagtgcagtggcaccatcccagctcactgcaacctctacctcccaggttcaagtgattcttctgcctcagcctccggagtagctgggattagaggtgcct-gccaccacagccagcCtctaatgttgacagtagagtagggtgactgtagttagcaacaatgtattgtatatttcaaagtagctagaagagagaacttgaaa-ccaacacacagaaatgataaatactcaaagtgatgga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171352805 851 - 171630274 acaggcatacccaataaaaacggcaccaagctcaaatacttccacacaaggaaattctaccaaaccgtcaaatatcaaaaaaccacgatgctac-----ttattcaaagga-aaaaaacctgcattttataaagttagtataacattgatcacaaatatttcagtttgaa---aaagtgaaaaccacaggtcagtttgac---------atatgaaatataatgcctaaatcttaaataaaattaacagtaaacagaatccagtagcacatttaaaacaataaaataggatgtccaagtggggtttattccaggaatgtaaagatcacccattattaggaaagatattaatgtaatccatcatagttggaactggaggtcattatgttaagtaaaaagagccagatgcagaaagacaaatttcccatcttctcagtcgtatgtgggagctcaaaaaattgatctcatggaggtagacagtacaatgatagatatcaagatgagggaagaatgtgtatgttggagctgggtatgaagagagatttgtcaatgggtacaaacatgtaattagatagaaggtataggttc-------tttctttaaatttttgagttggactctggctctgttgcccaagct-cagtgccattgcatcaccccagctcactgcaacctccaccgcccaggttcaagtgattctcctgccttagtct-ctgactagctgggattgcgggc-cat-tccaccaaagccaggcactaatgttgatagtagaggagggtgactatagttagcaacagtgtatcgtatatttcaaagtagctagaagagagaacctgaaacccaacacgtagaaatgataaatactcacagtgatgga
i calJac3.chr4             C 0 I 14847
s aotNan1.NW_018494050v1      122755 858 -    285216 acaggtatacccaataaaaacggcaccaagctcaaataattc--cacaaggaaattctaccaaagtgtcaagtatc-agaaaccacgatgctac-----ttattcaaagta-aaaagccctgcattttataaagttagtataacattgatcacaaacatttcagtttaaactgaaaatgaaaactacaggtcagttcgacatattaaatatatgaaatgtaatgcctaaatcttaaataaaattaacagtaaacagaatccggtagcacatttaaaacaataatacaggatgtccaagtggggtttattccaggaatgtaaagatcactcattattaggaaagatattaatataatccatcatagtgggagctgcaggtcattatgttacgtaaaataagccagaggcagaaagacaaatttcccatcttctcagtcatacgtgggagctaaaaaaatcgatctcatggaggtagagagtacaatgatagataccaggatcagggaagaatgtgtatgttggagctgggtatgaagagagatttgtcaatgggtacaaacacataa--agatagaaggtataggttc-------tttttttaaattttcgagttggactctggctctgttgcccaagct-cagtgccattgcaccatcccagctcactgcaacctccacc-tccaggtttaagtgattctcctgccttagtct-ctgagtatctgggactgcgggcacct-gccaccacagccaggcActaatattgatagtagagtagggtgactatagttagcaacagtgtattgtatatttcaaagtagctagaagagagaacctgaaacccaacacatagaaatgataaatactcaaagtgatgga
i aotNan1.NW_018494050v1   C 0 I 12673
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e macNem1.NW_012011356v1     1934656 7126 -   2996164 I
e rheMac8.chr4              29302726 7098 + 172585720 I

a score=1139534.000000
s hg38.chr6_GL000254v2_alt    106705 295 +   4827813 taccccaaataccctgactttactcatAATAAGTGAAAGACATACTAAATTAGAttggatagcatactttgttgtcaaggttgccgagaaattagtcttttcatagagtactggtgggaatggaaaatggtataattccaagggcagaaaatttgcagtatctagaaaaaatgtataattatttaccctttaacccacaaattccacttctaaaaagctatccctaatatatactatcaaaaTAAAAAGggccaggcacagtggcttacgcctgtaatctcaacactttggaagg
s panTro5.chr6              29086873 295 + 175400573 taccccaaataccctgactttactcatAATAAGTGAAAGACATACTaaattagattggatagcatactttgttgtcaaggttgccgagaaattagtcttttcatagagtactggtgggaatggaaaatggtataattccaagggcagaaaatttgcagtatctagaaaaaatgtataattatttaccctttaacccacaaattccacttctaaaaagctatccctaatatatactatcaaaataaaaagggccaggcacagtggcttacgcctgtaatctcaacactttggaagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29321254 295 + 173848474 taccccaaataccctgactttactcatAATAAGTGAAAGACATACTAAATTAGAttggatagcatactttgttgtcaaggttgccgagaaattagtcttttcatagagtactggtgggaatggaaaatggtataattccaagggcagaaaatttgcagtatctagaaaaaatgtataattatttaccctttaacccacaaattccacttctaaaaagctatccctaatatatactatcaaaaTAAAAAGggccaggcacagtggcttacgcctgtaatctcaacactttggaagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5121411 295 +   6154872 taccccaaataccctgactttactcatAATAAGTGAAAGACATACTAAATTAGACTGgatagcatactttgttgtcaaggttgccgagaaattagtcttttcatagagtactggtgggaatggaaaatggtataattccaagggcagaaaatttgcagtatctagaaaaaatgtataattatttaccctttaacccacaaattccacttctaaaaagctatccctaatatatactatcaaaataaaaagggccaggcacagtggcttatgcctgtaatctcaacactttggaagg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74123568 284 + 122973662 taccccaaatatcctgacttTACTCGTAATAAGTGAAATACATACTAAATTAGAttggatagcatactttgttgtcaaggttgccgagaaattagtcttttcatagagtactggttggaatggaaaatggtataattccaagggcagaaaatttgcagtatctagaaaaaaggtataattatttaccctttaacccacaaattccacttctgcaaagctttccctaatatatactatcaaaaTAAAAATGGTC-----------ctcacccctgtaatcccagcactttgggagg
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28964473 294 - 170955103 taccccaaatacactgaccttactcatAATAAGTGAAATACATACTAAATTAGATTGAatagcatactttgttgtcaaggttgccaagaaattagtcttttcatagagtactggtgggaatggaaaatggtataattccaagggcagaaaatttgcagtatctagaaaaagggtataattatttaccatttaacccacaaatt-cacttctacaaagctatccctaatatatactatcaaaattaaaagggccaggcacagtggcttactcctgtaatctcaaccctttggaagg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1813076 293 -   2157725 taccccaaatacactgactttactcatAATAAGTGAAATACATACTAAATTAGATTGAatagcatactttgttgtcaaggttgccaagaaatt-gtcttttcatagagtactggtaggaatggaaaatggtataattccaagggcagaaaatttgcagtatctagaaaaagggtataattatttaccctttaacccacaaatt-cacttctacaaagctatccctaatatatactatcaaaattaAAAGggccaggcacagtggcttactcctgtaatctcaaccctttggaagg
i cerAty1.NW_012001495v1   C 0 I 11529
s chlSab2.chr17             28266669 294 -  71996105 taccccaaatacactgaccttactcatAGTAAGTGAAATACATACTAAATTAGATTGAatagcatactttgttgtcaaggttgccaagaaattagtcttttcatagagtactggtgggaatggaaaatggtataattccaagggcagaaaatttgcagtatctagaaaaagggtataattatttaccctttaacccacaaatt-cacttctacaaagctatccctaatatatactatcaaaattaaaagggccaggcacagtggcttactcctgtaatctcaaccctttggaagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1939301 293 +   2316924 taccccaaatacactgactttactcatAATAAGTGAAATACATACTAAATTagattgaatagcatactttgttgtcaaggttgccaagaaatt-gtcttttcatagagtactggtaggaatggaaaatggtataattccaagggcagaaaatttgcagtatctagaaaaagggtataattatttaccctttaacccacaaatt-cacttctacaaagctatccctaatatatactatcaaaattaaaagggccaggcacagtggcttactcctgtaatctcaaccctttggaagg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1812537 294 -   3067355 taccccaaatacactgactttactcatAATAAGTGAAATACATACTAAATTAGAttggatagcatactttgttgtcaaggttgccaagaaattagtcttttcatagagtactggtgggaagggaaaatggtataattccaagggcagaaaatttgcagtatctagaaaaagggtataattatttaccctttaacccacaaatt-cacttctacaaagctatccctaatatatactatcaaaattaaaagggccaggcacagtggcttactcctgtaatctcaaccctttggaagg
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e macNem1.NW_012011356v1     1934656 7126 -   2996164 I
e rheMac8.chr4              29302726 7098 + 172585720 I

a score=660186.000000
s hg38.chr6_GL000254v2_alt    107000 246 +   4827813 ccaaggccggcaaatcacttgaggccaaaagtttgagaccagcctggtcaacacagtgaaaccctgcctctactaaaaatacaaaaag-tagtcaggtgtagtggcgggcacttgtaattgcagctcctcaagaggctgaggcaggagaattgcttgaatcccaggaggcagaggttgcagtgagccaagatgtcaccacagcactccagcctgggtgagagagcaaaactccatctcaaat----aataa
s panTro5.chr6              29087168 246 + 175400573 ccaaggctggcaaatcacttgaggccaaaagtttgagaccagcctggtcaacacggtgaaaccctgcctctactaaaaatacaaaaag-tagtcaggtgtagtggcgggcacttgtaattgcagctcctcaagaggctgaggcaggagaattgcttgaatcccaggaggcagaggttgcagtgagccaagatgtcaccacagcactccagcctgggtgagagagcaaaactccatctcaaat----aataa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29321549 246 + 173848474 ccaaggctggcaaatcacttgaggccaaaagtttgagaccagcctggtcaacacggtgaaaccctgcctctactaaaaatacaaaaag-tagtcaggtgtagtggcaggcacttgtaattgcagctcctcaagaggctgaggcaggagaattgcttgaatcccaggaggcagaggttgcagtgagccaagatgtcaccacagcactccagcctgggtgagagagcaaaactccatctcaaat----aataa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5121706 247 +   6154872 ccaaggctggcaaatcacttgaggccaaaagtttgagaccagcctggacaacacggtgaaaccctgcctctactaaaaatacaaaaag-tagtcaggtgtggtggcgggcacttgtaattgcagctcctcaaggggctgaggcaggagaattgcttgaatcccaggaggcagaggttgcagtgagccaagatgtcaccacagcactccagcctgggtgagagagcaaaacaccatctcaaat---aaataa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74123852 225 + 122973662 ccgaggcgggtggatca--tgaggtcaggagatcgagaccatcctggctaacacgatgaaaccccgtctctactaaaaatagaaaaaattagccggacctggtg-------------------gctatttgggaggctgaagcaggagaatcgcttgaa-cctgggagctggaggttgcagtgagccaagatcactcctctgcactctagcttgggagacagagcgagactccatctcaaaa----aaaaa
i nomLeu3.chr1a            C 0 I 1485
s macFas5.chr4              28964767 245 - 170955103 ctgaggccggcaaatcacttgaggccaaaagtttgagaccagcctggccaacatggtgaaaccctgtctctgctaaaaatacaaaaag-tagtcaggtatgatggcgggcgcttgtaatttcagctcctcaagaggctgaggcaggagaattgcttgaa-tccaggaggcacagggtgcagtaagccagtatcacaccatagcactccagcctgggcgacagagcaagactccatctcaaat----aataa
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28266963 240 -  71996105 ctgaggctggcaaatcacttgaggccaaaagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaag-tagtcaggtgtgatggcgggcgcttgtaatttcagttcctcaagaggctgaggcaggagaattgcttgaa-tccaggaggcagagggtgcagtaagccagtatcacaccatagcactccagcctgggcgacagagcaagactccatctcaaat---------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1939594 240 +   2316924 ctgaggccagcaaatcacttgaggccaaaagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaag-tagtcaggtgtgatggcgggcgcttgtaatttcagctcctcaagaggctgaggcaggagaattgcttgaa-tccaggaggcagagggtgcagtaagccagtatcacaccacagcactccagcctgggcgacagagcaagactccatctcaaat---------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1812831 249 -   3067355 ctgaggctggcaaatcacttgaggccaaaagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaag-tagtcaggtgtgatggcgggcgcttgtaatttcagctcctcaagaggctgaggcaggagaattgcttgaa-tccaggaggcagaaggtgcagtaagccagtatcacaccacagcactccagcctgggcgacagagcaagactccatctcaaataataaataa
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e cerAty1.NW_012001495v1     1813369 11529 -   2157725 I
e macNem1.NW_012011356v1     1934656 7126 -   2996164 I
e rheMac8.chr4              29302726 7098 + 172585720 I

a score=125672.000000
s hg38.chr6_GL000254v2_alt    107246 64 +   4827813 taataat-aataaat-actaaATaaataaaaaggaaaacagatgcatgactattcatcacaactct
s panTro5.chr6              29087414 64 + 175400573 taataat-aataaat-actaaataaataaaaaggaaaacagatgcatgactattcatcacaactct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29321795 64 + 173848474 taataat-aataaat-actaaataaataaaaaGGAAAACAGATGCATGACTATTCATCACAACTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5121953 64 +   6154872 taataat-aataact-actaaataaataaaaaggaaaacagacgcatgactattcatcacaactct
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28965012 65 - 170955103 -ataaataaataaataaataaataaataaGAAGGAAAAtagatgcatgactattcatcacaactct
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28267203 58 -  71996105 --------aataactaaataaataaataagaaggaaaatagatgcatgactattcatcacaactct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1939834 62 +   2316924 ----aataaataaataaataaataaataagaaggaaaatagatgcatgactattcatcacaactct
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1813080 64 -   3067355 -ataaataaataaataaataaataaataaGAA-GAAAAtagatgcatgactattcatcacaactct
i colAng1.NW_012115566v1   C 0 I 6440
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e cerAty1.NW_012001495v1     1813369 11529 -   2157725 I
e macNem1.NW_012011356v1     1934656 7126 -   2996164 I
e rheMac8.chr4              29302726 7098 + 172585720 I
e nomLeu3.chr1a             74124077 1485 + 122973662 I

a score=381141.000000
s hg38.chr6_GL000254v2_alt    107310 216 +   4827813 atttgtaaagcaaaagaaggaaacaatccaggccgggtgcggtggctcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcaccaggtcaggagattgagaccatcctggctaacatgatg--aaaccccgtctctattaaaa-tacaaaaaattagctgggtgtggcggcacgtgcctgtagccccagctactagggaggctggggc
s panTro5.chr6              29087478 216 + 175400573 atttgtaaagcaaaagaaggaaacaatccaggccgggtgcggtggctcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcaccaggtcaggaaatcgagaccatcctggctatcatgatg--aaaccccgtctctattaaaa-tacaaaaaattagctgggtgtggcggcacgtgcctgtagccccagctactagggaggctggggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29321859 215 + 173848474 ATTTGTAAAGCAAAAGAAGG-AACAATCCAggccgggtgcggtggctcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcaccaggtcaggagatcgagaccatcctggctaacatgatg--aaaccccgtctctattaaaa-tacaaaaaattagctgggtgtggcggcacgtgcctgtagccccagctactagggaggctggggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5122017 216 +   6154872 atttgtaaagcaaaagaaggaaacaatccaggccgggtgcggtggctcatgcctgtaatcccagcactttgggaggctgaggcaggtggatcaccaggtcaggagatcgagaccatcctggctaacatgatg--aaaccccgtctctattaaaa-tacaaaaaattagctgggcgtggcagcacgtgcctgtagccccagctactagggaggctggggc
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28965077 219 - 170955103 gtttgtaaagcaaaagaaggaaacaatccaggccaggtgcggtggctcacgcctgtagtcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagatcgagaccatcctggctaacatgatgaaaaaccctgtctctactaaaaatacaaaaaatcagctgggcgtggtggtgggtgcctgtagtcccagctattcgggaggctgaggc
i macFas5.chr4             C 0 I 42
s chlSab2.chr17             28267261 219 -  71996105 gtttgtaaagcaaaagaaggaaacaatccaggccaggtgcggtggctcacgcctgtagtcccagcactttgggaggctgaggcagggggatcacaaggtcaggagatcgagaccaccctggctaacacgatgaaaaaccctgtctctactaaaagtacaaaaaattagccgggcgtggtggtgggtgcctgtagtcccagctattcgggaggctgaggc
i chlSab2.chr17            C 0 I 42
s manLeu1.NW_012104165v1     1939896 219 +   2316924 atttgtaaagcaaaagaaggaaacaatccaggccaggcgcggtggctcacgcctgtagtcccagcattttaggaggctgaggcgggtggatcacgaggtcaggaaatcgagaccatcctggctaacacgatgaaaaaccctgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggtgcctgtagtcccagctattcgggaggctgaggc
i manLeu1.NW_012104165v1   C 0 I 5585
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1813144 6440 -   3067355 I
e cerAty1.NW_012001495v1     1813369 11529 -   2157725 I
e macNem1.NW_012011356v1     1934656 7126 -   2996164 I
e rheMac8.chr4              29302726 7098 + 172585720 I
e nomLeu3.chr1a             74124077 1485 + 122973662 I

a score=1979538.000000
s hg38.chr6_GL000254v2_alt    107526 1574 +   4827813 caagatcatgccactgcactctagcctgggagacagagcgagactccatctcaaaaaaaaaaaaacaaaaaa-------aaggaaacaaT-------ccaaatgtctgacaaaagggtcaatttgagaaaactatggtacatcaatataatgtcactgtaaaaaggaatACTAAATGATCAGCTTCAatctctccttcccctatgaagaagggcatatatgtatttgaacttcactgggacactgggtaatcactctcctacaattaccccatgcttatgtatgttaaataaattttgtatgtctttttcttttattaatctgcctttgtcacttcattttcagcaaatttcagtgggcagagaggaagcttttccgccacccctacaTAGTTAATActctaccttgagcatggcacacagagaatactaaggtgctaatagctcttactgcggcttgtgaggcagtggcttcaaaacaggaaatacaagccaagaggatttcagactactgcacttcatccactgagtgttcagcatctagaacttttcttccacaaagagaaacatgcaattgttaccacctctagctccagagtcctagctcagagatttttcctatagaaagaaatgagccagccgggcatggtggctcatgtctgtaatcccagcactttgggaggccaaggcgggcagatcacctgaggtcaggagtttgagaccagcctggccaacatggcgaaaacccatctctactaaaaatac------aaaaaaaatagctgggcctggtggtgtgtgcctataattccagctactatggaggctgaggaaggagaatcgcttgaacccaggaggtggaggttgcagtgagctgagattgtaccactgcactccagcctgggcgacagagcaagactccatctcaaaaaaaaaaaaaaaaaa----aagaagaagaagaaataaatgagccaaaaagtagatagcttccaatcctttcccaaaataactgatttaatttgtaacatagaatagagaagt-ggaaagctaagggcattctcaagaatggtggagattttgatgaaaggtaattgggaggaaatttgtgaatctaagaaagatagatcttaaactgtagtctggctagtatgcaggagagaatcaggaaataagacaggtaggaggaacccttttggagtcaggacaaatatcaaatacttacatcagaaactattccatttaaggagctacattttgattggatttgttcatagaggaatttatacctcaaggcattgttgaaaacaatacaacaactggtcagcaataactgaaacacaacagtagggtgtggtcagaaaaagagtg-aaaagaacattgccagcaccactgtcatcccagggtgactgggggcataccaaaaactgcatcaccacgaagactaatgtcagaggattagcactcttgggagtgaaataTCCAGGGTTatataatactccatgttaataaaatgaatggcaataatcaaat-atcatctcaattgagatacagaaaggattcaacaaaattcaacacacttttatgaaaaaagcactcagc
s panTro5.chr6              29087694 1572 + 175400573 taagatcatgccactgcactctagcctgggagacagagcgagactccatctcaaaaaaaaaaaaaaaaaaaa-------aaggaaacaat-------ccaaatgtctgacaaaagggtcagtttgagaaaactatggtacatcaatataatgtcactgtaaaaaggaatatgaaatgatcAGCTTCAatctctccttcccctatgaagaagggcatatatgtatttgaacttcactgggacactgcgtaatcactctcctacaattaccccatgcttatgtatgttaaataaattttgtatgtctttttcttttattaatctgcctttgtcacttcatttttagcaaatttcagtgggcagagaggaagcttttccgccacccctacaTAGTTAATAccctaccttgagcatggcacacagagaatactaaggtgctaatagctcttactgcggcttgtgaggcagtggcttcaaaacaggaaatacaagccaagaggatttcagagtactgcactccatccactgattgttcagcatctagaacttttcttccacaaagagaaacatgcaattgttaccacctctagctccagagtcctagctcagagatttttcctatagaaagaagtgagccagccgagcatggtggctcatgtctgtaatcccagcactttgggaggccaaggcgggcagatcacctgaggtcaggagtttgagaccagcctggccaacatggcgaaaacccatctctactaaaaatac------aaaaaaaatagctgggcctggtggtgtgtgcctgtaattccagctactatggaggttgaggaaggagaatcgcttgaacccaggaggtggaggttgcagtgagctgagattgtaccactgcactccagcctgggcgacagagcaagactccatctcaaaaaaaaaaaaaaaaaa-------aagaagaagaaataaatgagccaaaaagtagatagcttccaatcctttcccaaaataactgatttaattggtaacacagaatagagaagt-ggaaagctaagggcattctcaagaatggtggagattttgatgaaaggtaattgggaggaaatttgtgaatctaagaaagatagatcttaaactgtagtctggctagtatgcaggagagaatcaggaaataagacagttaggaggaacccttttggagtcaggacaaatatcaaatacttacatcagaaactattccatttaaggagctacattttgattggatttgttcatagaggaatttatacctcaaggcattgttgaaaacaatacaacaactggtcagcaataactgaaacacaacagtagggtgtggtcagaaaaagagtgaaaaagaacattgccagcaccactgtcatcccagggtgactgggggcatacgaaaaactgcatcaccacgaagactaatgtcagaggattagcactcttgggagtgaaataTCCAGGGTTatataatactccatattaataaaatgaatggcaataatcaaat-atcatctcaattgagatacagaaaggattcaacaaaattcaacacacttttatgaaaaaagcactcagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29322074 1557 + 173848474 caagatcatgccactgcactctagcctgggagacagagcgagactccatct-----acaaaaaaaaaaaaaa-------aaggaaacaaT-------ccaaatgtctgacaaaagggtcaatttgagaaaactatggtacatcaatataatgtcactgtaaaaaggaatacgaaatGATCAGCTTCAatctctccttcccctatgaagaagggcatatatgtatttgaacttcactgggacactgcgtaatcactctcctacaattaccccatgcttatgtatgttaaataaattttgtatgtctttttcttttattaatctgcctttgtcacttcattttcagcaaatttcagtgggcagagaggaagcttttccgccacccctacaTAGTTAATActctaccttgagcatggcacacagagaatactaaggtgctaatagctcttactgcggcttgtgaggcagtggcttcaaaacaggaaatacaagccaagaggatttcagagtactgcactccatccactgagtgttcagcatctagaacttttcttccacaaagagaaacatgcaattgttaccacctctagctccagagtcctagctcagagatttttcctatagaaagaagtgagccagccgagcatggtggctcatgtctgtaatcccagcactttgggaggccaaggcgggcagatcacctgaggtcaggagtttgagaccagcctggccaacatggcgaaaacccatctctactaaaaatac------aaaaaaaatagctgggcctggtggtgtgtgcctgtaattccagctactatggaggctgaggaaggagaatcgcttgaacccaggaggtggaggttgcagtgagctgagattgtaccactgcactccagcctgggcgacagagcaagactccatctcaaaaaaaa-----------------aagaagaagaaataaatgagccaaaaagtagatagcttccaatcctttcccaaaataactgatttaattggtaacacagaatagagaagt-ggaaagctaagggcattctcaagaatggtggagattttgatgaaaggtaattgggaggaaatttgtgaatctaagaaagatagatcttaaactgtagtctggctagtatgcaggagagaatcaggaaataagacagttaggaggaacccttttggagtcaggacaaatatcaaatacttacatcagaaactattccatttaaggagctacattttgattggatttgttcacagaggaatttatacctcaaggcattgttgaaaacaatacaacaactggtcagcaataactgaaacacaacagtagggtgtggtcagaaaaagagtgaaaaagaacattgccagcaccactgtcatcccagggtgactgggggcataccaaaaactgcatcaccacgaagactaatgtcagaggattagcactcttgggagtgaaataTCCAGGGTTatataatactccatattaataaaatgaatggcaataatcaaat-atcatctcaattgagatacagaaaggattcaacaaaattcaacacacttttatgaaaaaagcactcagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5122233 1576 +   6154872 caagatcatgccactgcactctagcctgggagacagagcgagactccatctcaaa-aaaaaaaaaaaaaaaa-------aaggaaacaat-------ccaaatatctgacaaaagggtcaatttgagaaaactatggtacatcaatataatgtcactgtaaaaaggaatacgaaatgatcAGCTTCAatctctccttcccctatgaagaagggcatatatgtatttgaacttcactgggacactgggtaatcactctcctacaattaccccatgcttatgtatgttaaataaaatttgtatgtctttttcttttattaatctgcctttgttacttcattttcagcaaatttcagtgggcagagaggaagcttttccgccacccctacaTAGTTAATActctaccttgagcatggcacacagagaatactaaggtgctaatagctcttactgcggcttgtgaggcagtggcttcaagagaggaaatacaagccaagaggatttcagactactgcactccatccactgagtgttcagcatctagaacttttcttccacaaagagaaacatgcaattgttaccacctctagctccagagtcctagctcagagatttttcctatagaaagaagtgagcaagccgggcatggtggctcatgtctgtaatcccagcactttgggaggccaaggcgggcagatcacctga-gtcaggagtttgagaccagcctggccaacatggtgaaaacccatctctactaaaaatac------aaaaaaaatagctgggcctggtggtgtgtgcctgtaatt-cagctactatggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagctgagattgtaccactgcactccagcctgggcgacacagcaagactccatctcaaaaaaaaaaaaaaagaagcagaagaagaagaagaaataaatgagccaaaaagtagatagcttccaatcc-ttcccaaaataactgatttaatttgtaacacagaatagagaagtgggaaagctaagggcattctcaagaatggtggagattttgatgaaaggtaattgggaggaaatttgtgaatctaagaaagatagatcttaaactgtagtctggctagtatgcaggagagaatcaggaaataagacagttaggaggaacccttttggggtcaggacaaatatcaaatacttacatcagaaactattcaatttaaagagctacattttgattggatttgttcatagaggaatttatacctcagggcattgttgaaaacaatacaacaactggtcagcaataactgaaacacaacagtagggtgtggtcagaaaaagagtgaaaaagaacattgccagcaccactgtcatcctagggtgactgggggcataccaaaaactgcatcaccacgaagactaatgtcagaggattagcactcttgggagtgaaataTCCAGGGTTatacaatactccatattaataaaatgaatggcaataatcaaat-atcatctcaattgagatagagaaaggattcaacaaaattcaacacacttttacgaaaaaagcactcagc
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              28965338 1529 - 170955103 caagatcactccactgcactctagcctgggagacagagcgagactcgctctcaaa-aaaaaaaaaaaaaaaa-------aaggaaacaatccaaatgccaaatgtctgacaaaagggtcaatttgagaaaactatggtacatcaatataatgtcactgtaaaaaggaatAcaaaatgatcagcttcaatctccccttcccctatgaagaagggcgtatatgcatctgaacttcactgggacactgggcaatcactctcctgcaattaccccatgcttatgtgtgttaaataaatgtcgtgtgtctttttcttttattaatctgcctttgtcacttcattttcagcaaatttcagtgggcagagaagaaacttttcctccatccttaGATAGTTAATActctaccttgagcatggcacacagagaatactgaggtgctaatagctcttactgcagcatgtgaggcagtggcttcaaaacaggaaatacaagccaagaggatttcagactactgcactctgtccactgagtgttcagcatctagaacatttctttcacaaagagaagcatgcaattgttcccacctctagctccagagtcctagctcagagatttttcctatagaaataagtgagccagccaggcatggtggctcatgcctataatcccagcactttgggaggccaagatgggcggatcacctgaggtcacgagtttgagaccagcctggccaacatggcgaaaacccatctctactaaaaatac--------aaaaattagctgggcatggtggtgtgtacctgtaatcccagctactatggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagctgagattgcgtcactacaccccagcctgggcgacagagcaagactccatctcaaaaaaaacaaaaaag---------aagaag----------tgagccgaaaagtagatagcttccaatcc-ttcccaaaataattaatttaatttgtaacagagaatagagaagt-tgaaagctaagggcattctcaagaatggtggagattctgatgaaaggtaattgggaggaaatttgtgaatctaagaaagatggatcttaaactgcagtctggctattatgcaggagagcatcaggagataaggcagttaggaggaactcttttggggtcgggacaaatatcaaatacttacatcagaaactattccatttaaggagctacattttggttggatttgttcatagaggaatttattcctcagggcattgttgaaaacaatgcaacaactggtcagcaataactgaaacataacagtagggtgtggtCAGAAAAAGAGTGAAAAAGAACGTTGCCAGCACC-----------------------------------ACTGCATCACCACGAAGGGTAATATCAGAGGATTAGCGCTCCTGGGAGTGAAATATCCAGGGATACACAatactccatgttaacaaaatgaagggcaataatcacacgatcatctcaactgacatagagaaagcattcaacaaaattcaacacacttttatgaaaaaagcattcagc
i macFas5.chr4             I 42 I 3462
s chlSab2.chr17             28267522 1575 -  71996105 caagatcactccgctgcactctagcgtgggagacagagAAAAAATCaaaaaaaaa-aaaaaaaaaaaaaaaaaaaaaaGAAGGAAACAATCCAAATGCCAAATGTCTGACAAAAGGGTCAATTTGAGAAAACTATGGTACATCAATATAATGTCACTGT-AAAAGGAATAcaaaatgatcagcttcaatctccccttcccctatgaagaagggtgtatatgcatctgaacttcactgggacactgggcaatcactctcctgcaattaccccatgcttatgtatgttaaataaatgctgtgtgtctttttcttttattaatctgcctttgtcacttcattttcagcaaatttcagtgggcagagaagaaacttttcctccatccttaGATAGTTAATActctaccttgagcatggcacacagagaatactgaggtgccaatagctcttactgcagcatgtgaggcagtggcttcaaaacaggaaatacaagccaagaggatttcagactactgcactctgtccactgagtgttcagcatctagaacatttctttcacaaacagaagcatgcaattgttcccacctctagctccagagtcctagctcagagattgttcctatagaaataagtgagccagccaggcatggtggctcatgtctataataccagcactttgggagaccaagatgggcggatcacctgaggtcacgagtttgagaccagcctggccaacatggcgaaaacccatctctactaaaaatacaaaaaaaaaaaaaaaagctgggcatggtggtgtgtgcctgtaatcccagctactatggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagctgagattgcgccactacaccccagcctgagcgacagagcaagactccatctcaaaaaaaacaaaa------------aagaag----------tgagccgaaaattagatagcttccaatcc-ttcccaaaataattaatttaatttgtaacagagaatagagaagt-tgaaagctaagggcattctcaagaatggtggagattctgatgaaaggtaattgggaggaaatttgtgaatctaagaaagatggatcttaaactgcagtctggctattatgcaggagagcatcaggagataagacagttaggaggaactcttttggggtcgggacaaatatcaaatacttacatcagaaactattccatttaaggagctacattttggttggatttgttcatagaggaatttataactcagggcattgttgaaaacaatgcaaaaactggtcagcaataactgaaacataacagtagggtgtggtcagaaaaagagtgaaaaagaatgttgccagcaccactgtcatcccagggtgactgggggcataccgaaaactgcatcaccatgaagggtaatgtcagaggattagcactcctgggagtgaaataTCCAGGGATACACAatactgcatgttaacaaaatgaagggcaataatcacatgatcatctcaactgacatagagaaagcattcaacaaaattcaacacacttttatgaaaaaagcattcagc
i chlSab2.chr17            I 42 I 1352
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1813144 6440 -   3067355 I
e manLeu1.NW_012104165v1     1940115 5585 +   2316924 I
e cerAty1.NW_012001495v1     1813369 11529 -   2157725 I
e macNem1.NW_012011356v1     1934656 7126 -   2996164 I
e rheMac8.chr4              29302726 7098 + 172585720 I
e nomLeu3.chr1a             74124077 1485 + 122973662 I

a score=170611.000000
s hg38.chr6_GL000254v2_alt    109100 310 +   4827813 ggccaggcgcgatggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgagttcaggagatcgagaccatcgtggctaacacggtgaaaccccgtctctactaaaaaaaatgaaaaaaattagccgggcatggtggcagacgcctgtagtcccagctactcgggagactgaggcaggagaatggcgtgaacccgggaggcagactttgcagtgagcagagatggcgccactgcactgcagcctggtcaagggagcaaaactccgactcaaaaaaagaaaaaagaaaagaaaaaa
s panTro5.chr6              29089266 310 + 175400573 ggccaggcgcgatggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcgtggctaacacggtgaaaccccgtctctactaaaaaaaatgaaaaaaattagccgggcatggtggcagacgcctgtagtcccagctactcgggagactgaggcaggagaatggcgtgaacccgggaggcagactttgcagtgagccgagacggcgccactgcactgcagcctgggcaagggagcaaaactccgactcaaaaaaagaaaaaagaaaagaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29323631 310 + 173848474 ggccaggcgcgatggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcgtggctaacacggtgaaaccccgtctctactaaaaaaaatgaaaaaaattagccgggcatggtggcagacgcctgtagtcccagctactcgggagactgaggcaggagaatggcgtgaacccgggaggcagactttgcagtgagccgagacggcgccactgcactgcagcctgggcaagggagcaaaactccgactcaaaaaaagaaaaaagaaaagaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5123809 303 +   6154872 ggccaggcgcgatggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcgtggctaacacggtgaaaccccctctctactaaaaaaaatgaaaaaaattagccgggcatggtggcagacgcctgtagtcccagctactcaggagactgaggcaggagaatggcgtgaacccgggaggcagactttgcagtgagccgagatggcgccactgcactgcagcctgggcaagggagaaaaactccgactca-------aaaaaagaaaagaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1813144 6440 -   3067355 I
e manLeu1.NW_012104165v1     1940115 5585 +   2316924 I
e chlSab2.chr17             28269097 1352 -  71996105 I
e cerAty1.NW_012001495v1     1813369 11529 -   2157725 I
e macNem1.NW_012011356v1     1934656 7126 -   2996164 I
e macFas5.chr4              28966867 3462 - 170955103 I
e rheMac8.chr4              29302726 7098 + 172585720 I
e nomLeu3.chr1a             74124077 1485 + 122973662 I

a score=3814237.000000
s hg38.chr6_GL000254v2_alt    109410 4305 +   4827813 [encoded data, 4334 characters]
s panTro5.chr6              29089576 4308 + 175400573 [encoded data, 4334 characters]
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29323941 4307 + 173848474 [encoded data, 4334 characters]
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5124112 4302 +   6154872 [encoded data, 4334 characters]
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74125562 4304 + 122973662 [encoded data, 4334 characters]
i nomLeu3.chr1a            I 1485 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1813144 6440 -   3067355 I
e manLeu1.NW_012104165v1     1940115 5585 +   2316924 I
e chlSab2.chr17             28269097 1352 -  71996105 I
e cerAty1.NW_012001495v1     1813369 11529 -   2157725 I
e macNem1.NW_012011356v1     1934656 7126 -   2996164 I
e macFas5.chr4              28966867 3462 - 170955103 I
e rheMac8.chr4              29302726 7098 + 172585720 I

a score=9240.000000
s hg38.chr6_GL000254v2_alt    113715 9 +   4827813 acattactG
s panTro5.chr6              29093884 9 + 175400573 acattactG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29328248 9 + 173848474 acattactG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5128414 9 +   6154872 acattactG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74129866 9 + 122973662 acattactG
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28970329 9 - 170955103 acttaaTTA
i macFas5.chr4             I 3462 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1813144 6440 -   3067355 I
e manLeu1.NW_012104165v1     1940115 5585 +   2316924 I
e chlSab2.chr17             28269097 1352 -  71996105 I
e cerAty1.NW_012001495v1     1813369 11529 -   2157725 I
e macNem1.NW_012011356v1     1934656 7126 -   2996164 I
e rheMac8.chr4              29302726 7098 + 172585720 I

a score=24400.000000
s hg38.chr6_GL000254v2_alt    113724 12 +   4827813 TGgggcgcagtg
s panTro5.chr6              29093893 12 + 175400573 TGgggtgcagtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29328257 12 + 173848474 TGgggcgcagtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5128423 12 +   6154872 TGgggcgcggtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74129875 12 + 122973662 TGgggcatggtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29309824 12 + 172585720 TGgggcgcggca
i rheMac8.chr4             I 7098 C 0
s macFas5.chr4              28970338 12 - 170955103 TGgggcgcagca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1941782 12 -   2996164 TGgggcgcggca
i macNem1.NW_012011356v1   I 7126 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1813144 6440 -   3067355 I
e manLeu1.NW_012104165v1     1940115 5585 +   2316924 I
e chlSab2.chr17             28269097 1352 -  71996105 I
e cerAty1.NW_012001495v1     1813369 11529 -   2157725 I

a score=425363.000000
s hg38.chr6_GL000254v2_alt    113736 144 +   4827813 gctcacacctgaaatcccagcactttcggagaccaaggtgtgtgcatcacgaggtcaggagtttgggaccagcctggccaacatggtgaaaccccatttctactaaaaatacaaaaattaggtaggtatggtggtacccaccta
s panTro5.chr6              29093905 144 + 175400573 gctcacacctgaaatcccagcactttcggagaccgaggtgtgtgcatcacgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattaggtaggcatggtggtacccacctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29328269 144 + 173848474 gctcacacctgaaatcccagcactttcggagaccgaggtgtgtgcatcacgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattaggtaggcatggtggtacccacctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5128435 144 +   6154872 gctcacacctgaagtcccagcacttttggagaccgaggtgtgtgcatcacgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattaggtaggcatggtggtacccacctg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74129887 144 + 122973662 gctcacacctgtaatcccagcacttttggagaccgaggtatgtggatcatgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccatctctactagaaatacaaaaattggctgtgcgcggtggcacccacctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29309836 144 + 172585720 gctcacacatgtaatcccagcattttgggagaccgaggcgtatggatcacgaggtcaggagtttgagaccagcctggccaacatggtgaaactctgtctctactaaaaacacaaaaattagctgggcatgggggcacacgcctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28970350 144 - 170955103 gctcacacatgtaatcccagcattttgggagaccgaggtgtgtggatcacgaggtcaggagtttgagaccagcctggccaacatgatgaaactctgtctctactaaaaacacaaaaattagctgggcatgggggcacacgcctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1941794 144 -   2996164 gctcacacatgtaatcccagcattttgggagaccgaggtgtgtggatcacgaggtcaggagtttgagaccagcctggccaacatggtgaaactctgtctctactaaaaacacaaaaattagctgggcatgggggcacacgcctg
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1945700 144 +   2316924 gctcacacatgtaatcccagcattttgggagaccgaggtgtgtggaccacgaggtcaggagtttgagaccagcctggccaacatggtgaaactctgtctctactaaaaacacaaaaattagctgggcatgagggcacacgcctg
i manLeu1.NW_012104165v1   I 5585 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1813144 6440 -   3067355 I
e chlSab2.chr17             28269097 1352 -  71996105 I
e cerAty1.NW_012001495v1     1813369 11529 -   2157725 I

a score=5851624.000000
s hg38.chr6_GL000254v2_alt    113880 1575 +   4827813 tagtcccaactactcaggaagctgaggcagaagaatcacttgaacctgg-----------------gagccgagattgtgccactgcactccagcctgagggacagagtgagactgcatctcggaaaaaaaa---acaaa--aaacaaaaaagaaaTCCCCTGTTAGAAGAGAATAAAATAGAGTGAAAAcaagatggccaaataggaacagctctggtctgcagctcccagcgtgattgccacagaagataggtgatttctgcatttccaactaaggtaactggttcatctcactgggactggttggacagtgggtacagcccatggagggtgagctgaagcagggcggagcatcgcctcacctgggaagtgcaagg-ttcaggggatttccctttcccagccaagggaaactgtgacagagtgtacctggaaaatcgggacactcctgccctaatactgcacttttccaatggtcttagcaaatggcacaccaggagattatacccagagcctggctcagagggtcctacgcccacggagccttgctcactgctagagcagcagtccgagatcgaacagcgaggtggcagcctggctgggggagggggtcctccattgctgaggcttgagtaggcaaacaaagtggcccagaagctcttattgggtggagtccaccacagctcaaggaggcctgcctgcctttgtagactccacctctggggggcagggcatagctgaacaaaaggcagcagaaacttctgcagacttaaacgtccctgtctgacagctctgaagagagcagtggttctcccagcacggagtttgagtcctaagaagggacagactgcctcctcaagtgggtccctgacccctgtgtagcctaactgggagacacctcccagtaggggccgactaacacctcatacagccaggtgcccctctgagacgaagcttccagaagaaggatcaggcagtaatatttgctgttctgcaatatctgctgttctgcagcctctgctggtgatacccaggcaaacagggtctggagtggacctctagcaaactccaacagacctgcagctcagagacctg----ttaggaggaaaactaacaaacagaaagaaatagcatcaacatcaacaacaaggacatccacaccaaaagcccatctgtaggtcaccatcatcaaagaccaaaggcagataaaaccacaaagatggagagaaaccagagcagaaaagctgaaaatcctaaacaccagagcacctcttctcctccaaaggatcgcagctcctcaccagcaatggaacaaagctggatggagaatcactttgatgaattgacagaagtaggcttcagaaggtcagtaataacaaacttctccgagctaaaggaggcggtttgaacccatcataaggaagctaaaaaccttgaaaaaagattagacaaatggctaactagaataaacagtgtagagaagacctcaaaggacctgatggagctgaaaaccatggcacgagaactacgtgacacatgtaaaagcttcagtagccgattccatcaagtggaagaaagggtatcagtgattgaagatcaaat
s panTro5.chr6              29094049 1572 + 175400573 tagtcccaactactcaggaagctgaggcagaagaatcacttgaacctgg-----------------gagccgagattgttccactgcactccagcctgggggacagagtgagactgcatctcgaaaaaaaa------aaa--aaaaaaaaaagaaaTCCCCTGTTAGAAGAGAATAAAATAGAGTGAAAAcaagatggccgaataggaacagctctggtctgcagctcccagcgtgattgccacagaagataggtgatttctgcatttccaactgaggtaactggttcgtctcactgggactggttggacagtgggtacagcccatggagggtgagctgaagcagggcagagcatcgcctcacctgggaagtgcaagg-gtcaggggatttccctttcccagccaagggaaactgtgacagagtgtacctggaaaatcgggacactcctgccctaatactgcacttttccaatggtcttagcaaatggcacaccaggagattatacccagagcctggctcagagggtcctacgcccacggagccttgctcactgctagagcagcagtccgagatcgaacagcgaggtggcagcctggctgggggagggagtcctccattgctgaggcttgagtagacaaacaaagtggcccagaagctcttactgggtggagcccaccacagctcaaggaggcctgcctgcctttgtagactccacctctggggggcagggcatagctgaacaaaaggcagcagaaacttctgcagacttaaacgtccctgtctgacagctctgaagagagcagtggttctcccagcacggagtttgagtcctaagaagggacagactgcctcctcaagtgggtccctgacccctgtgtagcctaactgggagacacctcccagtaggggccgactgacacctcatacagccaggtgcccctctgagacgaagcttccagaagaaggatcaggcagtaatatttgctgttctgcaatatctgctgttctgcagcctctgctagtgatacccaggcaaacagggtctggagtggacctctagcaaactccaacagacctgcagctcagagacctg----ttaggaggaaaactaacaaacagaaagaaatagcatcaacatcaacaacaaggacatccacaccaaaagcccatctgtaggtcaccatcatcaaagaccaaaggcagataaaaccacaaagatggagagaaaccagagcagaaaagctgaaaattctaaacaccagagcacctcttctcctccaaaggatcgcagctcctcaccagcaatggaacaaagctggatggagaatgactttgatgaatggacagaagtaggcttcagaaggtcagtaataacaaacttctccgagctaaaggaggcggtttgaacccatcataaggaagctaaaaaccttgaaaaaagattagacaaatggctaactagaataaacagtgcagagaagacctcaaaggacctgatggagctgaaaaccatggcacaagaactacgtgacacatgtacaagcttcagtagccgattccatcaagtggaagaaagggtatcagtgattgaagatcaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29328413 1573 + 173848474 tagtcccaactactcaggaagctgaggcagaagaatcacttgaacctgg-----------------gagccgagattgttccactgcactccagcctgggggacagagtgagactgcatctcaaaaaaaaaa-----aaa--aaaaaaaaaagaaaTCCCCTGTTAGAAGAGAATAAAATAGAGTGAAAAcaagatggccgaataggaacagctctggtctgcagctcccagcgtgattgccacagaagataggtgatttctgcatttccaactgaggtaactggttcgtctcactgggactggttggacagtgggtacagcccatggagggtgagctgaagcagggcggagcatcgcctcacctgggaagtgcaagg-gtcaggggatttccctttcccagccaagggaaactgtgacagagtgtacctggaaaatcgggacactcctgccctaatactgcacttttccaatggtcttagcaaatggcacaccaggagattatacccagagcctggctcagagggtcctacgcccacggagccttgctcactgctagagcagcagtccgagatcgaacagcgaggtggcagcctggctgggggagggggtcctccattgctgaggcttgagtaggcaaacaaagtggcccagaagctcttaccgggtggagcccaccacagctcaaggaggcctgcctgcctttgtagactccacctctggggggcagggcatagctgaacaaaaggcagcagaaacttctgcagacttaaacgtccctgtctgacagctctgaagagagcagtggttctcccagcacggagtttgagtcctaagaagggacagactgcctcctcaagtgggtccctgacccctgtgtagcctaactgggagacacctcccagtaggggccgactgacacctcatacagccaggtgcccctctgagacgaagcttccagaagaaggatcaggcagtaatatttgctgttctgcaatatctgctgttctgcagcctctgctagtgatacccaggcaaacagggtctggagtggacctctagcaaactccaacagacctgcagctcagagacctg----ttaggaggaaaactaacaaacagaaagaaatagcatcaacatcaacaacaaggacatccacaccaaaagcccatctgtaggtcaccatcatcaaagaccaaaggcagataaaaccacaaagatggagagaaaccagagcagaaaagctgaaaattctaaacaccagagcacctcttctcctccaaaggatcgcagctcctcaccagcaatggaacaaagctggatggagaatgactttgatgaatggacagaagtaggcttcagaaggtcagtaataacaaacttctccgagctaaaggaggcggtttgaacccatcataaggaagctaaaaaccttgaaaaaagattagacaaatggctaactagaataaacagtgcagagaagacctcaaaggacctgatggagctgaaaaccgtggcacgagaactacgtgacacatgtacaagcttcagtagccgattccatcaagtggaagaaagggtatcagtgattgaagatcaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5128579 1576 +   6154872 tagtcccaactactcaggaagctgaggcagaagaatcacttgaacctgg-----------------gagccgagattgtgccactgcactccagcttgggggacagagtgagactgcatctcaaaaaaaaaaaaaaaaaa--aaaaaagaaaGAAATCCCCTGTTAGAAGAGAATAAAATAGAGTGAAAAcaagatggccgaataggaacagctctggtctgcagctcccagcgtgactgccacagaagataggtga-ttctgcatttccaactgaagtaactggttcgtctcactggg-ctggttggacagtgggtacagcccatggagggtgagcggaagcagggcggagcatcgcctcacctgggaagtgcaagg-gtcaggggatttccctttcctagccaagggaaactgtgacagagtgtacctggaaaatcgggacactcctgccctaatactgcacttttccaatggtcttagcaaatggcacaccaggagattatacccggagcctggctcagagggtcctatgcccacggagccttgctcactgctagagtagcagtccaagatcgaacagcgaggtggcagcctggctgggggagggggtccgccattgccgaggcttgagtagacaaacaaagtggcccagaagctcttactgggtggagcccaccacagctcaaggaggcctgcctgcctttgtagactccacctctggggggcagggcatagctgaacaaaaggcagcggaaacttctgcagacttaaacgtccctgtctgacagctctgaagagagcagtggttctcccagcacagagtttgagtcctaagaagggacagactgcctcctcaagtgggtccctgacccctgtgtagcctaactgggagacacctcccagtaggggccgactgacacctcatacagccaggtgcccctctgagacgaagcttccagaagaaggatcaggcagtaatatttgctgttctgcaatatctggtgttctgcagcctctgctggtgatacccaggcaaacagggtctggagtggacctctagcaaactccaacagacctgcagctcagagacctg----ttaggaggaaaactaacaaacagaaagaaatagcatcaacatcaacgaaaaggacatccacaccaaaagcccatctgtaggtcaccatcatcaaagaccaaaggcagataagaccacaaagatggagagaaaccagagcagaaaagctgaaaattctaaacaccagagcacctcttctcctccaaaggatcacagctcctcaccagcaatggaacaaagctggatggagaatgactttgatgaattgacagaagtaggcttcagaaggtcagtaataacaaacttctccgagctaaaggaggcggtttgaacccaacataaggaagctaaaaaccttgaaaaaagattagacaaatggctaactagaataaacagtgtagagaagacctcaaaggacctgatggagctgaaaaccatggcacgagaactacgtgacacatgtacaagcttcagtagccaattccatcaagtggaagaaagggtatcagtgattgaagatcaaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74130031 1581 + 122973662 tagtcccaactactcgggaagctgaggcagaagaatcacttgaacccgggagtcggaggttgcagtgagctgagattgtgccactgcactccagcctgggggacagagtgagactccatctcaaaaaaa--------aaa--aaaaaaaaaagaaaTTCCCTGTTAGAAGAGAATAAAATAGAGTGAAAAcaagatggccgaataggaacagctctgttctgcagttcccagcgtgatcgccgcagaagatgggtgatttctgcatttccaactgaggtaactggttcatctcactgggactggttggacagtgggtacagcccatggagggtgagctgaagcagggtagggcatcgcctcacctgggaaatgcaagg-gtcaggggatttccctttcctagccaaggtaagccgtgaaagactgtacctggaaaatcgggacactcctgccctaatactgcacttttccaacagtcttagcaaatggcacaccaggagattataccacgagcctggctcagagggtcctatgcccacggagccttgctcactgctagtgcagcagtctgatatcaaacagcatggtggcagcctggctgggggagggggtccgccattgctgaggcttgagtaggtaaacaaagtggccaggaagctcatactgggtggagcccaccacagctcaaggaggcctgcctgcctttgtagactccacttct-gggggcagggcatagctgaacaaaaggcagcagaaacttctgcagacttaaacgtccctgtctgacagctctgaagagagcagtggttctcccaacatggagtttgagctctgagaatggacaggctgcctcctcaagtaggtccctgagccctgtgtagcctaactgggagacacctcc--gtaggggccgactgacatctcatacaaccaggtgcgcctctgagacaaagcttccagaggaaggatcaggcagcaatatttgctgttctgcaatatctgctgttgtgcagcctccgctggtgatacccaggccaacagggtctggagtggacctctagcaaactccaacagacctgcagctgagggacctggctactagaaggaaaactaacaaacagaaaggaatagcatcaacatcaacaaaaaggacatccacactaaaacaccatctgtaggtcaccatcatcaaagaccaaaggtagataaagccacaaagatggagagaaactagagcagaaaagctgaaaattctaaaaaccagagcgcctcttctcctccaaaggatagcagctcct---cagcaacagaaaaaagctggacagagaatgactttgacgaattgatagaagtaggcttcagaaggtcagtaataacaaccttctccaagctaaaggaggctgtttgaacccatcataaggaagctaaaaaccttgaaaaaagattagacaaatggctaactagaataaacagtgtagagaagacctcaaaggacccgatggagctg-caaccatggcacaagaactaagtgatgcatgtacaagcttcagtagctgattcagtgaagtgga--gaagggtatcagtgattg-agatcaatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29309980 1583 + 172585720 tagtcccaactactggggaagctgaggcagaagaatcatttgaacccgggagtcagaggttgcagtgagctcagattgtgccactgcactccagcctgggggacagagtgagactccatctcaaaaaa---------aaaataaaataaaaagaaaTCCC--GTTAGAAGAGAATAAAATAGAGTGGAAAcaagacgaccgaataggaacagctctagtctgcagctcccaatgtaattgatgcagaagacaggtgatttttgcatttccaaccgaggtaactggttcctctcactgggactggttggatagtgcgtacagcccacggagggtgagctgaagcagggcagggcattgcctcacccaggaagtgcaaggagtcaggagattaccctttcctagccgagggaagctgtgacagactgtatctggaaaatcggaacactcctgctctaatactgcacttttccaatggtcttagcaaacggcacaccaggagattataccctgagcctggcttggagggtcccatgcccatggagtcttgctcactgctagtgcagcagtccaagatcaaacacc-aggtggcagcctgaccaggggagggag--caccattgctgagacttgagtaggtaaacaaagtggctgggaagctcaaactgggtggagcccaccacagctcaacaaggcttgcctgcctttgtagactccacctct-gggggcagggcatagctgaacaaaaggcagtagaaacttctgcagacttaaacatccctgtctgacagctctgaagagagcagtggttctctcagcacagagtttgagctctgcgaacggacagactgcctcctcaagtgggtccttgactcc-gtgtaacctacctgggagacacctcccagtaggggctgactgacacctcataaagccagatgcccatctaagacgaagcttccagaggaaggatcaggcagcaatatttgctgttctgc-atatttgctgttctgcagcctccactggtattacctaggcaaacaggatctggagtagacctccagcaaactccaacagacctgcagctgagggacctgactgttagaaggaaaactaacaaacagaaaggaatagcatcaacatcaataaaaagggcatccacaccaaaaccccatctgtaggtcaccatcattgaagaccaaaggtagataaaaccacaaagatgga-agaaaccagagcagaaaagctgaaaattctaaatacctgagcgcctcttctcgtccaaaggatcgcagctcctcaccaacaacgaaacaaagctggacggagaatgaatttgacgaattcacagaagtaggcttcagaaggtcagtaatagcaaactcatctgagctaaaggaggacgtttgaacccaccataaggaagctaaaaaccttgaaaaaagattagacaaatggctaactagaataaacagtgtagagaagacctcaaaggacctgaaggagctgaaaatcatggcatgagagctacgtgatgcatgcacaagcttcagtagccgattcaa-caagtggaagaaagggtatcagtgattgaagatcaaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28970494 1581 - 170955103 tagtcccaactactggggaagctgaggcagaagaatcatttgaacccgggagtcggaggttgcagtgagctcagattgtgccactgcactccagcctgggggacagagtgagactccatctcaaaaaa---------ata--aaaataaaaagaaaTCCC--GTTAGAAGAGAATAAAATAGAGTGGAAAcaagacgaccgaataggaacagctctagtctgcagctcccaatgtaattgatgcagaagacaggtgatttttgcatttccaaccgaggtaactggttcctctcactgggactggttggatagtgcgtacagcccacggagggtgagctgaagcagggcagggcattgcctcacccaggaagtgcaaggagtcaggagattaccctttcctagccgagggaagctgtgacagacagtacctggaaaatcggaacactcctgctctaatactgcacttttccaatggtcttagcaaacggcacaccaggagattataccctgagcctggcttggagggtcccatgcccatggagtcttgctcactgctagtgcagcagtccaagatcaaacacc-aggtggcagcctgaccaggggagggag--caccattgctgagacttgagtaggtaaacaaagtggctgggaagctcaaactgggtggagcccaccacagctcaacaaggcttgcctgcctttgtagactccacctct-gggggcagggcatagctgaacaaaaggcagcagaaacttctgcagacttaaacgtccctgtctgacagctctgaagagagcagtggttctctcagcacagagtttgagctctgcgaacggacagactgcctcctcaagtgggtccttgactcc-gtgtaacctacctgggagacacctcccagtaggggctgactgacacctcataaagccagatgcccatctaagacgaagcttccagaggaaggatcaggcagcaatatttgctgttctgc-atatttgctgttctgcagcctccactggtgatacctaggcaaacaggatctggagtagacctccagcaaactccaacagacctgcagctgagggacctgactgttagaaggaaaactaacaaacagaaaggaatagcatcaacatcaataaaaagggcatccacaccaaaaccccatctgtaggtcaccatcattgaagaccaaaggtagataaaaccacaaagatgga-agaaaccagagcagaaaagctgaaaattctaaatacctgagcgcctcttctcgtccaaaggatcgcagctcctcaccaacaacgaaacaaagctggacggagaatgaatttgacgaattcacagaagtaggcttcagaaggtcagtaatagcaaactcatctgagctaaaggaggacgtttgaacccaccataaggaagctaaaaaccttgaaaaaagattagacaaatggctaactagaataaacagtgtagagaagacctcaaaggacctgaaggagctgaaaatcatggcatgagagctacgtgatgcatgcacaagcttcagtagccgattcaa-caagtggaagaaagggtatcagtgattgaagatcaaat
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     1941938 1582 -   2996164 tagtcccaactactggggaagctgaggcagaagaatcatttgaacccgggagtcggaggttgcagtgagctcagattgtgccactgcactccagcctgggggacagagtgagactccatctcaaaaaat--------aaa--aaaataaaaagaaaTCCC--GTTAGAAGAGAATAAAATAGAGTGGAAAcaagacgaccgaataggaacagctctagtctgcagctcccaatgtaattgatgcagaagacaggtgatttttgcatttccaaccgaggtaactggttcctctcactgggactggttggatagtgcatacagcccatggagggtgagctgaagcagggcagggcattgcctcacccaggaagtgcaaggagtcaggagattaccctttcctagccgagggaagctgtgacagactgtacctggaaaatcggaacactcctgctctaatactgcacttttccaatggtcttagcaaacggcacaccaggagattataccctgagcctggcttggagggtcccatgcccatggagtcttgctcactgctagtgcagcagtccaagatcaaacacc-aggtggcagcctgaccaggggagggag--caccattgctgagacttgagtaggtaaacaaagtggctgggaagctcaaactgggtggagcccaccacagctcaacaagccttgcctgcctttgtagactccacctct-gggggcagggcatagctgaacaaaaggcagcagaaacttctgcagtcttaaacgtccctgtctgacagctctgaagagagcagtggttctctcagcacagagtttgagctctgtgaacggacagactgcctcctcaagtgggtccttgactcc-gtgtaacctacctgggagacacctcccagtaggggctgactgacacctcataaagccagatgcccatctaagacgaagcttccagaggaaggatcaggcagcaatatttgctgttctgc-atatttgctgttctgcagcctccactggtgatacctaggcaaacaggatctggagtagacctccagcaaactccaacagacctgcaactgagggacctgactgttagaaggaaaactaacaaacagaaaggaatagcatcaacatcaataaaaagggcatccacaccaaaaccccatctgtaggtcgccatcattgaagaccaaaggtagataaaaccacaaagatgga-agaaaccagagcagaaaagctgaaaattctaaatacctgagcgcctcttctcgtccaaaggatcgcagctcctcaccaacaacgaaacaaagctggacggagaatgaatttgacgaattcacagaagtaggcttcagaaggtcagtaatagcaaactcatctgagctaaaggaggacgtttgaacccaccataaggaagctaaaaaccttgaaaaaagattagacaaatggctaactagaataaacagtgtagagaagacctcaaaggacctgaaggagctgaaaatcatggcatgagagctacgtgatgcatgcacaagcttcagtagccgattcaa-caagtggaagaaagggtatcagtgattgaagatcaaat
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1945844 1583 +   2316924 tagtcccaactactggggaagctgaggcagaagaatcatttgaacccggaagttggaggttgctgtgagctcagattgtgccactgcactccagcctgggggacagagtgagactccatctcaaaaaa---------aaaaagaaagaaaaagaaaTCCC--GTTAGAAGAGAATAAAATAGAGTGGAAAcaagacgaccgaataggaacagctctagtctgcagctcccaatgtaattgatgcagaagacaggtgatttttgcatttccaaccgaggtaactggttcctctcactgggactggttggatagtgcgtacagcccacggagggtgagctgaagcagggcagggcattgcctcacccaggaagtgcaaggagtcaggagattacactttcctagccgagggaagctgtgacagactgtacctggaaaatcggaacactcctgctctaatactgcacttttccaatggtcttagcaaacggcacaccaggagattataccctgagcctggcttggagggtcccatgcccatggagtcttgctcactgctagtgcagcagtccaagatcaaacacc-aggtggcagcctgaccgggggaggggg--caccattgctgagacttgagtaggtaaacaaagtggttgggaagctcaaactgggtggagcccaccacagctcaacgaggcttgcctgcctttgtagactacacctct-gggggcagcgcatagctgaacaaaaggcagcagaaacttctgcagacttaaacgtgcctgtctgacagctctgaagagagcagtggttctctcagcacagagtttgagctctgcgaacggacagactgcctcctcaagtgggtccttgactcc-gtgtaacctacctgggagacacctcccagtgggggctgactgacacctcataaagccaggtgctcatctaagacgaagcttccagaggaaggatcaggcagcaatatttgctgttctgc-atatttgctgttctgcagcctccactggtgatacctaggcaaacaggatctggagtagacctccagcaaactccaacagacctgcagctgagggacctgactgttagaaggaaaactaacaaacagaaaggaatagcatcaacatcaataaaaagggcatccacaccaaaaccccatctgtaggtcaccatcattgaagaccaaaggtagataaaaccacaaagatgga-agaaaccagagcagaaaagctgaaaattctaaatacctgagcgcctcttctcgtccaaaggatcgcagctcctcaccaacaacgaaacaaagctggacggagaatgaatttgacgaattcacagaagtaggcttcagaaggtcagtaatagcaaactcatctgagctaaaggaggacgtttgaacccaccataaggaagctaaaaaccttgaaaaaagattagacaaatggctaactagaataaacagtgtagagaagacctcaaaggacctgaaggagctgaaaatcatggcacgagagctacgtgatgcatgcacaagcttcagtagccgattcaa-caagtggaagaaagggtatcagtgattgaagatcaaat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1819584 1571 -   3067355 tagtcccaactactggggaagctgaggcagaagaatcatttgaacccgggagtcagaggttgcagtgagctgagattgtgccactgcactccagtctgggggacagagtgagactccatctcaaaaaa---------aaa--aaaaT--------CCCCT--GTTAGAAGAGAATAAAATAGAGTGGAAAcaagacgaccgaataggaacagctctagtctgcagctcccaatgtaattgatgcaaaagacgggtgatttctgcatttccaaccgaggtaactggttcctctcattgggactggttggatagtgcgtatagcccatggagggtgagctgaagcagggcagggcattgcctcacccaggaagcgcaagaggtcagcagatttccctttcctagccgagggaagctgtgacagactgtacctggaaaattggaacactcctgctctaatactgcacttttccagtggtcttagcaaacggcacaccaggagattataccccgagcccggcttgaagggtcccatgcccatggagtcttgctcactgctagtgcagcagtccaagatcaaacagc-aggtggcagcctgactgggggaggggg--caccattgctgaggcttgagtaggtaaacaaagtggct-ggaagctcaaactgggtggagcccaccacagctcaatgaggtctgcctgcctttgtagactccacctct-gggggcagggcatagctgaacaaaaggcagcagaaacttctgcagacttaaacgtccctgtctgacagctctgaagagagcagtggttctctcagcacagagtttgagctctgagaacagacagactgcctcctcaagtgggtccctgactcc-atgtaacctacctgggagacacctcccagtaggggccgactgacacctcataaagccaggtgcccatctaagacgaagcttccagaggaaggatcaggcagcaatatttgctgttctgc-atatttgctgttctgcagcctccagtggtgatacctaggcaaacaggatctggagtagacttccagcaaactccaacagacctgcagctgagggacctgactgttggaaggaaaactaacaaacagaaaggaatagcatcaacatcaacaaaaaggacatccacaccaaaaccccatctgtaggtcaccatcattgaagaccaaaggtagataaaaccacaaagatgga-agaaaccagagcagaaaagctgaaaattctaaatacttgagcgtctcttctcctccaaaggatcgcagctcgtcaccaacaacgaagcaaagctggacggagaatgaatttgacgaattgacagaagtaggcttcagaaggtcagtaataacaaactcatccgagctaaaggaggacgtttgaacccatcataaggaagctaaaaaccttg-aaaaagattagacaaatggctaactagaataaacagtgtagagaagacctcaaaggacctgaaggagctgaaaatcatggcacaagaactacgtgatgcatgtacaagcttcagtagccgattcga-caagtggaagaaagggtgtcagtgattgaagatcaaat
i colAng1.NW_012115566v1   I 6440 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e chlSab2.chr17             28269097 1352 -  71996105 I
e cerAty1.NW_012001495v1     1813369 11529 -   2157725 I

a score=72590.000000
s hg38.chr6_GL000254v2_alt    115455 31 +   4827813 taatgaaacgaagcaagaagagaatttagag
s panTro5.chr6              29095621 31 + 175400573 taatgaaacgaagcaagaagagaatttagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29329986 31 + 173848474 taatgaaacgaagcaagaagagaatttagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5130155 14 +   6154872 taat-----------------gaatttagag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74131612 31 + 122973662 taatgaaatgaagtgagaagagaatttagag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29311563 31 + 172585720 gaatgaaataaagtgagaagagaatttagag
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     1943520 31 -   2996164 gaatgaaataaagtgagaagagaatttagag
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1947427 31 +   2316924 gaatgaaataaagtgagaagagaatttagag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1821155 31 -   3067355 gaatgaaataaagtgagaagagaatttagag
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e chlSab2.chr17             28269097 1352 -  71996105 I
e cerAty1.NW_012001495v1     1813369 11529 -   2157725 I
e macFas5.chr4              28972075  1 - 170955103 I

a score=14673.000000
s hg38.chr6_GL000254v2_alt    115486 7 +   4827813 aaaaaag
s panTro5.chr6              29095652 7 + 175400573 aaaaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29330017 6 + 173848474 -aaaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5130169 7 +   6154872 aaaaaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74131643 7 + 122973662 aaaaaag
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012011356v1     1943551 7 -   2996164 taaaaag
i macNem1.NW_012011356v1   C 0 I 3242
s manLeu1.NW_012104165v1     1947458 7 +   2316924 taaaaag
i manLeu1.NW_012104165v1   C 0 I 3410
s colAng1.NW_012115566v1     1821186 7 -   3067355 taaaaag
i colAng1.NW_012115566v1   C 0 I 7849
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e chlSab2.chr17             28269097 1352 -  71996105 I
e cerAty1.NW_012001495v1     1813369 11529 -   2157725 I
e macFas5.chr4              28972075 1 - 170955103 I
e rheMac8.chr4              29311594 0 + 172585720 C

a score=246692.000000
s hg38.chr6_GL000254v2_alt    115493 293 +   4827813 ggtaaaaagaagccgggcgcggtggctcacgcctgtaat--cccagcattttgggaggccgaggcgggcggatcacaacgtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaacattagctgggcatggtggcgggcgcctgtagtcccagccactcgggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtgagccaagatggcaccactgccctccagcctcagtgacacagtgagactctgtctcaa--------
s panTro5.chr6              29095659 301 + 175400573 ggtaaaaagaagccgggcgcagtggctcacgcctgtaat--cccagcactttgggaggccgaggcgggcggatcacaaggtcaggaggtcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaacattagctgggcatggtggcgggcgcctgtagtcccagccactagggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccaagatggcaccactgccctccagcctcagtgacacagtgagactctgtctcaaaaataaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29330023 293 + 173848474 ggtaaaaagaagccgggcgcggtggctcacgcctgtaat--cccagcactttgggaggccgaggcgggcggatcacaaggtcaggaggtcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaacattagctgggcatggtggcgggcgcctgtagtcccagccactagggaggctgaggcaggagaatggcgtgaacccgggaggaggagcttgcagtgagccaagatggcaccactgccctccagcctcagtgacacagtgagactctgtctcaa--------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5130176 297 +   6154872 ggtaaaaagaagccgggcgcggtggctcacgcctgtaat--cccagcactttgggaggccgaggcgggtggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaacattagctgggcatggtggcgggcgcctgtagtcccagccacttgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccaagatcgcaccactgccctccagcctcggtgacacagtgagactctgtctcaa----aaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74131650 287 + 122973662 ggtaaaaaaaggccaggcacggtggctcacacctgtaattatccagcactttgggaggccaaggtggggggatcatgaggtcaggagatcgagaccatcctggctagcacggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcatagtggcaggcgcctgtagtcccagctactcgggaggccgaggcaggagaatggcataaacctgggaggcggagtctgcagtgagccaagatcgca--------ctccagcctgggtgacacaacaagactccatctcaa--------
i nomLeu3.chr1a            C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1821193 7849 -   3067355 I
e manLeu1.NW_012104165v1     1947465 3410 +   2316924 I
e chlSab2.chr17             28269097 1352 -  71996105 I
e cerAty1.NW_012001495v1     1813369 11529 -   2157725 I
e macNem1.NW_012011356v1     1943558 3242 -   2996164 I
e macFas5.chr4              28972075   1 - 170955103 I
e rheMac8.chr4              29311594   0 + 172585720 C

a score=26671.000000
s hg38.chr6_GL000254v2_alt    115786 30 +   4827813 aaaaaaataaataaataaaagaaaaaaggc
s panTro5.chr6              29095960 30 + 175400573 aaataaataaataaataaaagaaaaaaggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29330316 30 + 173848474 aaataaataaataaataaaagaaaaaaggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5130473 30 +   6154872 aaataaataaataaataaaagaaaaaaggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74131937 27 + 122973662 ---aaaataaataaataaaagaaaaaaggg
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28972076 30 - 170955103 aatgaaataaagtgagaagagaatttagag
i macFas5.chr4             I 1 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1821193 7849 -   3067355 I
e manLeu1.NW_012104165v1     1947465 3410 +   2316924 I
e chlSab2.chr17             28269097 1352 -  71996105 I
e cerAty1.NW_012001495v1     1813369 11529 -   2157725 I
e macNem1.NW_012011356v1     1943558 3242 -   2996164 I
e rheMac8.chr4              29311594  0 + 172585720 C

a score=6517322.000000
s hg38.chr6_GL000254v2_alt    115816 3591 +   4827813 taaaaagaaacaaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacgtctgattggtgtacctgacactgacggggagaatggaaccaagttggaaaacactcttcaggatattatccaggagaacttccccaacctagtaaggcaggccaacattcaaattcaggaaatacagagaacaccacaaagatactcctcgagaaaaacaatcccaagacacataattgtcagattcaccaaggttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcgggttacccgcaaagggaatcccatcagactaacagcagatctcttggcagaaactctacaagccagaagagagtgggggccaatatttatcattcttaaagaaaagaattttcaacctagaatttcatatccagccaaactaagcttcataattgaaggagaaataaaatcctttgcagacaagcaaatgctgagagattttgtcaccaccaggcctgccttacaagagctcctgaaggaagcgctaaacatggaaaggaacaactggtaccagccactgcaaaatcatgccaaattgtaaagaccatcgatgctaggaagaaactgcatcaactaatgggcaaaataaccagctaacatcatgacaggatcaaattcacacataacaatattaaccttaaatgtaaatgggctaaatgccccaattaaattagacacagactggcaaattggataaagagtcaagacccatcaag-tgtgctgtattcaggagaccaatctcacatgcagagacgcacacaggctcaaaataaagggatggaggaagatctaccaagcaaatgtaaagc--------------aaaaaaaaaagcagcagttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaacaaagacaaagaaggccattacataatggtaaaggggtcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagtccttagagacctacaaagagacttagactcccacacaataataatgggagactttaacaccccactgtcaatattagacagatcaatgagacagaaggttaacaaggatatccaggacttgaactcagctctggaccaagcagacctaatagacatctacagaactctccaccccaaataaacagaatatacattcttctcagcaccacatcacacttattccaaaattgaccacaaagttggaagtaaagcactcctcagcaaatgtaaaagaacagaaatcacaacaaac-tgtctctcagaccacagtgcaatcaaattagaactcaggattaagaacctcattcaaaactgcacaactacatggaaactgaacaacttactcctgaatgactactgggtaaataacaaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacacaacataccagaatctctgggacgcattt-aaagcagtgtgtagagggaaatttatagcactaaatgcccacaagggaaagcaggaaagatctaaaatcgacatcctaacatcacaatgaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataactaagatcagagcagaactgaaggagacagaaacacaaaaaaccattcaaaaaatcaatgaatccaggcgctggcttttttgaaaagatcaacaaaattgatacatcaccagcaagactaataaagaagaaaatagagactaatcaaacagatgcaatgaaaaatgataaaggggatatcaccaccgatcccacagaaatgcaaactaccatcagagaatactataaacacctctatgcaaataaactagaaaatctagaagaaatggataaattcctggacacatacactctcctaagattaaactgggaagaagttgaatccctgaatagaccaataacaggctctgaaattgaggcaataattaatagcctaccaaccaaaaaaagtccaggaccagacggattcacagcagaattctaccacaggtacaaagaggagctagtccgatttcttctgaaactattccaaacaatagaaaaagagggactcatccgtaactcattttatgaggcaagcattatcctgataccaaagcctggcagagacatgacaaaaaaagagaattttagaccaatatccctgatgaacatcgatgcgaaaatcctcaataaaatacaggcaaaccaaatcgagcagcacatcaaaaagcttatccaccaagaacaagttggcttcatccctgggatacaaggcttgttcaacatatgaaaatcaataaatgtaatccatcacataaacagaaccaaagccaaaaaccatgtgattatctcaatagatgcagaaaaggccttcgacaaaattcaacagcccttcatgctaaaaactctcaataaactaggtattgacgggacgtatctcaaaataataagagctgtttatgccaaacccacagccaatatcatattgaatgggcaaaaactggaagcattcccttttaaagctggcacaagacagggatgccctctctcaccacttctattcaacatagtgttggaagttctggccagggcaatcaggcaagagaaacaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctgcttgcagatgacatgattgtatatttagaaaaccccatcgtctcagtccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaatcacaagcattcctatacatcagtaacagacag--agagccaaatcatgagggaactcccattcacaattgctacaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcctcaagaagaactacaaaccactgctcaacaaaataaaagaggacacaaacaaatggaagaacattccatgctcatggataggaagaatcaatgtcatgaaaatggccctactgcccaaggtaatttatagattcaatgccatctccctcaagctaccaatgactttcttcacagaattggaaaagactactttaaagttcatatggaaccaaaaaagagcctgcattgccaagacaatcctaagccaaaagaacaaagctggaggcatcacgctacctgacttcaaactatactacgtggttacagtaaccaaaacag-atggtactggtaccaaaatagatatatagaccaatggaacagaatagagccctcagaaataataccacacgtctacaaccatttgatctttgacaaacctgacaaaaacaagaaatggggaaaggattccctatttaataaatggtgctgagaaaactggctagccatatgtagaaagctgaaactggatccctcccttaaaccttatacaaaaattaattcaagatggatgaaagacttaaatgttagacctaaaaccataaaaacc
s panTro5.chr6              29095990 3589 + 175400573 taaaaagaaacaaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacatctgattggtgtacctgacactgacggggagaatggaaccaagttggaaaacactcttcaggatattatccaggagaacttccccaacctagtaaggcaggccaacattcagattcaggaaatacagagaacaccacaaagatactcctcgagaagaacaatcccaagacacataattgtcagattcaccaaggttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggttgggttacccgcaaagggaatcccatcagactaacagcagatctcttggcagaaactctacaagccagaagagagtgggggccaatatttatcattcttaaagaaaagaattttcaacctagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatcctttgcagacaagcaaatgctgagagattttgtcaccaccaggcctgccttacaagagctcctgaaggaagtgctaaacatggaaaggaacaactggtaccagccactgcaaaatcatgccaaattgtaaagaccatcgatgctaggaagaaactgcaccaactaatgggcaaaataaccagctaacatcatgacaggatcaaattcacacataacaatattaaccttaaatgtaaatgggctaaatgccccaattaaattagacacagactggcaaattggataaagagtcaagacccatcaag-tgtgctgtattcaggagaccaatctcacatgcagagacgcacacaggctcaaaataaagggatggaggaagatctaccaagcaaatgtaaagc-----------aaaaaaaaaaaaagcatcagttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaaaagacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacgggagcacccagattcataaagcaagtccttagagacctacaaagagacttagactcccacacaataataatgggagactttaacaccccactgtcaatattagacagatcaatgagacagaaggttaacaaggatatccaggacttgaactcagctctggaccaagcagacctaatagacatctacagaactctccaccccaaataaacagaatatacattcttctcagcaccacatcacacttattccaaaattgaccacaaagttggaagtaaagcactcctcagcaaatgtaaaagaacagaaatcacaacaaac-tgtctctcagaccacagtgcaatcaaattagaactcaggattaagaacctcattcaaaactgcacaactacatggaaactgaacaacttgctcctgaatgactactgggtaaataacaaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacacaacataccagaatctctgggacgcattt-aaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatataaaatcgacatcctaacatcacaatgaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataactaagatcagagcagaactgaaggagacagaaacacaaaaaaccattaaaaaaatcaatgaatccaggcgctggcttttttgaaaagatcaacaaaattgatacatcaccagcaagactaataaagaagaaaatagagactaatcaaacagatgcaatgaaaaatgataaaggggatatcaccaccgatcccacagtaatgcaaactaccatcagagaatactataaacacctctatgcaaataaactagaaaatctagaagaaatggataaattcctggacacatacactctcctaagattaaactgggaagaagttgaatccctgaatagaccaataacaggctctgaaattgaggcaataattaatagcctaccaacc-aaaaaagtccaggaccagacggattcacagcagaattctaccagaggtacaaagaggagctagtccgatttcttctgaaactattccaaacaatagaaaaagagggactcatccctaactcattttatgaggcaagcattatcctgataccaaagcctggcagagacatgacaaaaaaagagaattttagaccaatatccctgatgaacatcgatgcgaaaatcctcaataaaatacaggcaaaccaaatcgagcagcacatcaaaaagcttatccacgaagaacaagttggcttcatccctgggatacaaggcttgttcaacatacaaaaatcaataaatgtaatccatcacataaacagaaccaaagccaaaaaccatgtgattatctcaatagatgcagaaaaggccttcgacaaaattcaacagcccttcatgctaaaaactctcaataaactaggtattgatgggacgtatctcaaaataataagagctgtttatgccaaacccacagccaatatcatattgaatgggcaaaaactggaagcattcccttttaaaaccggcacaagacagggatgccctctctcaccacttctattcaacatagtgttggaagttcaggccagggcaatcaggcaagagaaacaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaaccccatcgtctcagtccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaatcacaagcattcctatacaccagta----acag--agagccaaatcatgagggaactcccattcacaattgctacaaagagaataaaatacctaggaatccaactgacaagggatgtgaaggacctcctcaagaagaactacaaaccactgctcaacaaaataaatgaggacacaaacaaatggaagaacattccatgctcatggataggaagaatcaatatcatgaaaatggccctactgcccaaggtaatttatagattcaatgccatctccctcaagctaccaatgactttcttcacagaattggaaaagactactttaaagttcatatggaaccaaaaaagagcctgcattgccaagacaatcctaagccaaaagaacaaagctggaggcatcacgctacctgacttcaaactatactacgtggctacagtaaccaaaacag-atggtactggtaccaaaatagatatatagaccaatggaacagaatagagccctcagaaataatactacacgtctacaaccatttgatctttgacaaacctgacaaaaacaagaaatggggaaaggattccctatttaataaatggtgctgagaaaactggctagccatatgtagaaagctgaaactggatccctcccttaaaccttatacaaaaattaattcaagatggattaaagacttaaatgttagacctaaaaccataaaaacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29330346 3586 + 173848474 taaaaagaaacaaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacgtctgattggtgtacctgacactgacggggagaatggaaccaagttggaaaacactcttcaggatattatccaggagaacttccccaacctagtaaggcaggccaacattcaaattcaggaaatacagagaacaccacaaagatactcctcgagaagaacaatcccaagacacataattgtcagattcaccaaggttgaaatgaaggaataaatgttaagggcagccagagagaaaggttgggttacccgcaaagggaatcccatcagactaacagcagatctcttggcagaaactctacaagccagaagagagtgggggccaatatttatcattcttaaagaaaagaattttcaacctagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatcctttgcagacaagcaaatgctgagagattttgtcaccaccaggcctgccttacaagagctcctgaaggaagtgctaaacatggaaaggaacaactggtaccagccactgcaaaatcatgccaaattgtaaagaccatcgatgctaggaagaaactgcaccaactaatgggcaaaataaccagctaacatcatgacaggatcaaattcacacataacaatattaaccttaaatgtaaatgggctaaatgccccaattaaattagacacagactggcaaattggataaagagtcaagacccatcaag-tgtgctgtattcaggagaccaatctcacatgcagagacgcacacaggctcaaaataaagggatggaggaagatctaccaagcaaatgtaaagc---------------aaaaaaaaagcatcagttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaaaagacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagtccttagagacctacaaagagacttagactcccacacaataataatgggagactttaacaccccactgtcaatattagacagatcaatgagacagaaggttaacaaggatatccaggacttgaactcagctctggaccaagcagacctaatagacatctacagaactctccaccccaaatcaacagaatatacattcttctcagcaccacatcacacttattccaaaattgaccacaaagttggaagtaaagcactcctcagcaaatgtaaaagaacagaaatcacaacaaac-tgtctctcagaccacagtgcaatcaaattagaactcaggattaagaacctcattcaaaactgcacaactacatggaaactgaacaacttgctcctgaatgactactgggtaaataacaaaatgaaggcagaaataaagatgttctttgaaaccaataagaacaaagacacaacataccagaatctctgggacgcatttaaaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaatcgacatcctaacatcacaatgaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataactaagatcagagcagaactgaaggagacagaaacacaaaaaaccattaaaaaaatcaatgaatccaggcactggcttttttgaaaagatcaacaaaattgatacatcaccagcaagactaataaagaagaaaatagagactaatcaaacagatgcaatgaaaaatgataaaggggatatcaccaccgatcccacagaaatgcaaactaccatcagagaatactataaacacctctatgcaaataaactagaaaatctagaagaaatggataaattcctggacacatacactctcctaagattaaactgggaagaagttgaatccctgaatagaccaataacaggctctgaaattgaggcaataattaatagcctaccaacc-aaaaaagtccaggaccagacggattcacagcagaattctaccagaggtacaaagaggagctagtccgatttcttctgaaactattccaaacaatagaaaaagagggactcatccctaactcattttatgaggcaagcattatcctgataccaaagcctggcagagacatgacaaaaaaagagaattttagaccaatatccctgatgaacatcgatgcgaaaatcctcaataaaatacaggcaaaccaaatcgagcagcacatcaaaaagcttatccaccaagaacaagttggcttcatccctgggatacaaggcttgttcaacatacgaaaatcaataaatgtaatccatcacataaacagaaccaaagccaaaaaccatgtgattatctcaatagatgcagaaaaggccttcgacaaaattcaacagcccttcatgctaaaaactctcaataaactaggtattgatgggacgtatctcaaaataataagagctgtttatgccaaacccacagccaatatcatattgaatgggcaaaaactggaagcattcccttttaaaaccggcacaagacagggatgccctctctcaccacttctattcaacatagtgttggaagttcaggccagggcaatcaggcaagagaaacaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatctagaaaaccccatcgtctcagtccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaatcacaagcattcctatacaccagta----acag--agagccaaatcatgagggaactcccattcacaattgctacaaagagaataaaatacctacgaatccaactgacaagggatgtgaaggacctcctcaagaagaactacaaaccactgctcaacaaaataaaagaggacacaaacaaatggaagaacattccatgctcatggataggaagaatcaatatcatgaaaatggccctactgcccaaggtaatttatagattcaatgccatctccctcaagctaccaatgactttcttcacagaattggaaaagactactttaaagttcatatggaaccaaaaaagagcctgcattgccaagacaatcctaagccaaaagaacaaagctggaggcatcacgctacctgacttcaaactatactacgtggctacagtaaccaaaacag-atggtactggtaccaaaatagatatatagaccaatggaacagaatagagccctcagaaataatactacacgtctacaaccatttgatctttgacaaacctgacaaaaacaagaaatggggaaaggattccctatttaataaatggtgctgagaaaactggctagccatatgtagaaagctgaaactggatccctcccttaaaccttatacaaaaattaattcaagatagattaaagacttaaatgttagacctaaaaccataaaaacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5130503 3605 +   6154872 taaaaagaaacaaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacgtctgattggtgtacctgacactgacggggagaatggaaccaagttggaaaacactcttcaggatattatccaggagaacttccccaacctagtaaggcaggccaacattcaaattcaggaaatacagagaacaccacaaagatactcctcgagaagaacaatcccaagacacataattgtcagattcaccaaggttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcgggttaactgcaaagggaatcccatcagactaacagcagatctcttggcagaaactctacaagccagaagagagtgggggccaatatttaacattcttaaagaaaagaattttcaacctagaatttcatatccagccaaactaagcttcataagtgaaggagaaataaaatcctttgcagacaagcaaatgctgagagattttgtcaccaccaggcctgccttacaagagctcctgaaggaagcactaaacatggaaaggaaaaactggtaccagccactgcaaaatcatgccaaattgtaaagaccatcgatgctaggaagaaactgcatcaactaatgggcaaaataaccagctaacatcatgacaggatcaaattcacacataacaatattaaccttaaatgtaaatgggctaaatgccccaattaaattagacacagattggcaaattggataaagagtcaagacccatcaagttgtgctgtattcaggagaccaatctcacatgcagagacgcacacaggctcaaaataaagggatggaggaagatctaccaagcaaatgtaaagcaaaaaaaaaaaaaaaaaaaaaaaagcagcagttgcaatcctagtctctgataaaacagaatttaaaccaacaaagatcaa-aaagacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagtccttagagacctacaaagagacttagactcccacacaataataatgggagactttaacaccccactgtcaatattagacagatcaatgagacagaaggttaacaaggatatccaggacttgaactcagctctggaccaagcagacctaatagacatctacagaactctccaccccaaataaaaagaatatacattcttctcagcaccacatcacacttataccaaaattgaccacaaagttggaagtaaagcactcctcagcaaatgtaaaagaacagaaatcacaacaaac-tgtctctcagaccacagtgcaatcaaattagaactcaggattaagaacctcattcaaaactgcacaactacatggaaactgaacaacttgctcctgaatgactactgggtaaataacaaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacacaacataccagaatctctgggacacattt-aaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaatcgacatcctaacatcacaatgaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaagtcaagaaataactaacatcagagcagaactgaaggagacagaaacacaaaaaaccgttcaaaaaatcaatgaatccaggcgctggcttttttgaaaagatcaacaaaattgatagatcaccagcaagactaataaagaagaaaatagagactaatcaaacagatgcaatgaaaaatgataaaggggatatcaccaccgatcccacagaaatgcaaactaccatcagagaatactataaacacctctatgcaaataaactagaaaatctagaagaaatggataaattcctggacacatacactctcctaagattaaactgggaagaagttgaatccctgaatagaccaataacaggctctgaaattgaggcaataattaatagcctaccaaccaaaaaaagtccaggaccagacggattcacagcagaattctaccagaggtacaaagaggagctagtccaatttcttctgaaacttttccaaacaatagaaaaagagggactcatccctaactcattttatgaggcaagcattatcctgataccaaagcctggcagagacatgacaaaaaaagagaattttagaccaatatccctgatgaacatcgatgcgaaaatcctcaataaaatacaggcaaaccaaatcgagcagcacatcaaaaagcttatccaccaagaacaagttggcttcatccctgggatgcaaggcttgttcaacatacgaaaatcaataaatgtaatccatcacataaacagaaccaaagccaaaaaccatgtgattatctcaatagatgcagaaaacgccttcaacaaaattcaacagcccttcatgctaaaaactctcaataaactaggtattgatgggatgtatctcaaaataataagagctatttatgccaaacccacagccaatatcatattgaatgggcaaaaactggaagcattcccctttaaaaccggcacaagacagggatgccctctctcaccacttctattcaacatagtgttggaagttcaggccagggcaatcaggcaagagaaacaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaaccccatcgtctcagtccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaatcacaagcattcctatacaccagtaacagacag--agagccaaatcatgagggaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcctcaagaagaactacaaaccactgctcaacaaaataaaagaggacacaaacaaatggaagaacgttccatgctcatggataggaagaatcaatatcatgaaaatggccctactgcccaaggtaatttatagattcaatgccatctccatcaagctaccaatgactttcctcacagaattggaaaagactactttaaagttcatatggaaccaaaaaagagcctgcattgccaagacaatcttaagcaaaaagaacaaagctggaggcatcacgcaacctgacttcaaactatactacgtggctacagtaaccaaaacag-atggtactggtaccaaaatagatatatagaccaatggaacggaatagagccctcagaaataataccacacgtctacaaccatttgatctttgacgaacctgacaaaaacaagaaatggggaaaggattccctatttaataaatggtgctgagaaaactggctagccatatgtagaaagctgaaactggatccctcccttaaaccttatacaaaaattaattcaagatagattaaagacttaaatgttagacgtaaaaccataaaaacc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74131964 3574 + 122973662 taaaaagaaacaaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacgtctgattggtgtacctaacactgacggagagaatggaaccaagttggaaaacactcttcaggatattatccaggagaacttccccaacctagtaaggcaggcgaacattcaaattcaggaaatacagagaacaccacaaagatactcctcgagaagaacaatcccaagacacataattgtcagattcaccaaggttgaaatgaaggaaaaaatgttaagggcagccagaaacaaaggtccggtgacccacaaagggaagcccatcagactaatggctgatctctcggcagaaactctacaaaccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaacctagaatttcatattcagccaaactaggcttcataagtgaaggagaaataaaatcctttacag-caagcaaatgctgagagattttgtcaccaccaggcctgccttacaagagctcctgaaggaaacactaaacatggaaaggaacaactggtaccagccactgcaaaaacatgccaaattgtaaagaccatcgatgctaggaagaaactgcatcaactaatgggcaaaataaccagctaacatcatgacaggatcaaattcacacataacaatgttaaccttaaatgtaaatgggctaaatgccccaattaaa--agacgcagactggcaaattggat--agagtcaagacccatcaag-tgtgctgtattcaggagacccatctcacatgcagagacgcacat-ggctcaaaataaagggatggaggaagatctaccaagcaaatgtaaagc----------------aaaaaaaagcaggtgttgcaatcctagtctctgataaaacagactttaaaccaacaaagatcaaaagagacaaagaaggccattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggaacacccagattcataaagcaagtccttagagacctacaaagagacttagactcccacacaataataatgggagactttaacaccccactgtcaatattagacagatcaacgagacagaaggttaacaaggatatgcaggacttgaactcagctctggaccaagcagacttaatagacatctacagaactctccatcccaaatcaacagaatatacgttcttctcagcaccacatcgcacttattccaaaattgaccacaaagttggaagtaaagcactcctcggcaaatacaaaagaacagaaatcacaacaaac-tgtctcacagaccacagtgcaatcaaattagaactcaggattaagaaactcattcaaaaccgcagaactacatggaaactgaacaacttgctcctgaatgactactgggtacataacaaaatgaaggcagaaataaagatgttctttgaaaccaacaagaacaaagacacaacataccagaatctctgggacacattt-aaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaattgacaccctaacatcacaactaaaagaactagagaagcaagagcaaacaaatgcaaaagctagcagaaggcaagaaataactaagatcagagcagaacggaaggagatagaaacacaaaaaacccttcagaaaatcaatgaatccaggagctgg-ttttttgaaaaga-aaacaaaattgatagactgctagcaagactaataaagaagaaaagagagaataatcaaacagatgcagtgaaaaatgataaaggggatatcaccactgatcccacagaaatacaaactaccatcagagaatactataaacacctctatgcaaataaactagaaaatctagaagaaatggataaattcctggacacatacaccctcctaagactaaactaggaagaagttgaatccctgaaaagaccaataacaggctctgaaattgaggcaataactaatagcctaccaaccaaaaaaagtccaggaccacacggattcacagcagaattctaacagaggtacaaagaggagctggtccgatttcttctgaaactattctaaacaatagaaaaagagggactcatccctaactcattttatgagaccagcatcatcctgataccaaagcctggcagagacatgacaaaaaaagagaattttagaccaatatccctgatgaacatcaatgtgaaaatcctcaataaaatacaggcaaaccaaatccagcagcacatcgaaaagcttatccacccagatcaagtgggcttcatccctgggatgcaaggctggttcaacatacgcaaatcaataaatgtaatccattacataaacagaaccaaagccaaaaaccacgtgattatctcaatagatgcagaaaaggcctttgacaaaatccaacagcccttcatgctaaaaactctcaataaactaggtactgatgggacgtatctcaaaataataagagctatttatgacaaacccacagccaatatcatattgaatgggcaaaaactggaagcattccctttgaaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttccggccagggcaatcaggcaagagaaagaaataaagggtattcagttaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaaccccattatctccatccaaaatctccttaagctgataagcaacttc-----agtctcaggatacaaaatcaatgtgcaaaaatcacaagcattcttatacaccaataacagatag--agagccaaatcatgagtgaactcccattcacaactgctacaaagagaatcaaatacctaggaatccagcttacaacggatgtgaaggacctcttcaaggagaactacaaaccactgctcaacaaaataaaagaggacacaaacaaatggaagaacattccatgttcatgaataggaagaatcaatatcatgaaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctaccaatgactttcttcacagaattggaaaagactactttaaagttcatatggaaccaaaaaagggcctgcattaccaagacaatcctaagcaaaaagaacaaagctggaggcatcacgctacctgacttcaaactatactacaaggctacagtaaccaaaacatcatggtactggtatcaaaacagagatatagaccaatggaacagaacagtgccctcagaaataataccacacatctacaaccatttgatgtttgacaaacctgacaaaaacaggaaatggggaaaggattccctatttaataaatggtgctgagaaaactggcta---atatgtagaaagctgaaactggatcccttccttacaccttatacaaaaaataattcaagatagattaaagacttaaatgttagacctaaaaccataaaaacc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29311594 3585 + 172585720 taaaaagaaatgaacatagcctccaagaaatatgggactatgtgaaaagaccaaatcttcatttgattggcgtacctgaaagtgatggggaatatggaaccaagttggaaaacactctgcaggatattatccaggagaacttccccaacctagtaaggcaggccaacattcaaattcaggaaatacagagaacaccacaaagatactcctcgagaagagcagtcccaagacacataattgtcagattcaccaaggttgaaatgaaggaaaaaatgttaagggcagccagagagaaaagtcgagttacccacaaagggaagtccatcagactaacagtgaatctcttggcagaaactctgcaaaccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaatccagaatttcatatccagccaaactaagtttcataagtgaaggtgaaataaaatcctttacagacaagcaaatgctgagagcttttgtcaccaccatgcctgccttacaagagctcctaaaggaagcactaaacatggaaaggaacaaccagtaccagccattgcaaaaacatgccaaattgtaaagaccatcgatgctaggaaaaaactgcatcaactaacaggcaaaataaccagctaacataatgacaggatcaaattcacacataacaatattaaccttaaatgtaaatgggctaaatgccccaattaaa----agacagactggcaaattggataaagagtcaagacccacc-ag-tgtgctgcattcaggagacccatctcacatgcagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatataaagc----------------aaaaagaggcaggggttgcaatcctagtctctgataaaacagactttaaacgaacaaagatcaaaagagacaaagaaggtcatcacataatggtaaagggatcaatacaacaagaagagctaactatcctaaatatatatgcacccaatacaggaacacccagattcataaagcaagtccttagagacctacaaagagaattagact-ccacacaataataacgggagactttaacaccccactgtcaatattagacagatcaacgagacagaacattaacaacgatatccaggacttgaactcagcactggaccaagcagacctaatagacatctacagaactctccacctcaaatcaacagaatatacattcttctcagcaccacattgcacttattccaaaattgaccacaaagttggaggtaaagcactcctcagcaaatgtacaagaatagaaatcaaaacaaacttgtctctcagaccacagagcaatcaaattagaactcaggattaagaaactcatttgaaactgcacaactacatggaaacagaacaacttgctcctgaatgactactgggtaaataacaaaatgaagacagaaataaagatgttctttgacaccaatgagaacaaagatacaacgtaccagaatatctgggacacattt-aaagcagtgtgtagagggaaatttatagcactaaatgcccataagagaaaggaggaaagatctaaaattgacaccctaacatcacaattaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataactaagatcagagcagaactgaaggagatagaaacacaaaaacctttcaaaaaaatcaatgaatccaggagctga-ttttttgaaaaga-aaacaaaattgatagaccactagcaagatgaataaaaaagaaaagagagaagaatcaaatagatgcaatgaaaaatgataaaggggatatcaccactgaccccacagaaatacaaactaccatcagagaatactataaacacctctatgcaaataaactagtaaatctagaagaaatggataaattcctggacacagacacactcctaagactaaatcaggaagaagttaaatccctgaatagaccagtaacaggctttgaaattggggcaataattaatagcctaccaaccaaaagaagtccaggaccagatgaattcacagccgaattctaccagagctacaaagaggagctggtcggattccttctgaaactattccaatcaatagaaaaagaggggcttatccctaacttattttatgaggccagcaccatcctgataccaaagcctggcagagacatgacaaaaaaagagaattttagaccaatatccctgatgaacatctgtgcaaaattcctcaataaaatactggcaaactgaatccagcagcatatcaaaaagcttatccaccaagatcaagttggcttcatccctgggatgcaaggcgtgttcaacatacataaatcaataaatgtaatccatcacataaacggaaccaaagacaaaaaccacatgattatctcaatagatgcagaaaaggccttcaacaaaattcagcatcacttcatgctaaaaactctcaataaactaggtattgatgggacgtatctcaaaataataagagctatttatgacaaacccacagccaatatcatactgaatgggcaaaacctggaagcattccctttgaaaagtggcacaagacaaggatgccctctctcattactcctgttcaacatagtgttggaagttctggccagggcaatcaggcaggagaaagaaataaagagtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaaccccatcgtctcagtccacaatctccttaagctgataagcaacttcagcaaagtctcaggataccaaatcaatgagcaaaaatcacaagcattcctatacaccaataacagataaacagagcctaatcataagtgaactcccattcacaatagctacaaagcgaataaaatacctaggaatccaactttcaagggatgtgaaggacctcttcaaggaggactacaaaccactgctcaacaaaataaaagaggacacaaacaaatggaagaacattccatgcttatggataggaagaatcaatatcgtgaaaatggccatactgcccaatgtaatttatagattcagtgccatctgcatcaagctaccaataactttcttcacagaattggaaaagactactttaaagttcatatggaaccaaaaaagagcctgcattgccaagacaatcctaagaaaaaagaacaaagctggaggcatcatgctacctgacttcaaactatactacatggctacagtaaccaaaacagcatggtactggtaccaaaatagatacatagaccaatggaacagaacagagccctcagaaataacaccacacatctacaaccatctgatctttgacaaacctgacaaaaacaagaaatggggaaaggattccctatttaataaatggtgctgggaaaactggctggccatatgtagaaagctgaaactggatccattccttacaccttatacaaaaattaattcaagatggattaaagacttaaatgttagacctaaaaccataaaaacc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28972106 3585 - 170955103 taaaaagaaatgaacatagcctccaagaaatatgggactatgtgaaaagaccaaatcttcatttgattggcgtacctgaaagtgacggggaatatggaaccaagttggaaaacactctgcaggatattatccaggagaacttccccaacctagtaaggcaggccaacattcaaattcaggaaatacagagaacaccacaaagatactcctcgagaagagcagtcccaagacacataattgtcagattcaccaaggttgaaatgaaggaaaaaatgttaagggcagccagagagaaaagtcgagttacccacaaagggaagtccatcagactaacagtgaatctcttggcagaaactctgcaaaccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaatccagaatttcatatccagccaaactaagtttcataagtgaaggtgaaataaaatcctttacagacaagcaaatgctgagagcttttgtcaccaccatgcctgccttacaagagctcctaaaggaagcactaaacatggaaaggaacaaccagtaccagccattgcaaaaacatgccaaattgtaaagaccatcgatgctaggaaaaaactgcatcaactaacaggcaaaataaccagctaacataatgacaggatcaaattcacacataacaatattaaccttaaatgtaaatgggctaaatgccccaattaaa----agacagactggcaaattggataaagagtcaagacccacc-ag-tgtgctgcattcaggagacccatctcacatgcagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatataaagc----------------aaaaagaggcaggggttgcaatcctagtctctgataaaacagactttaaacgaacaaagatcaaaagagacaaagaaggtcatcacataatggtaaagggatcaatacaacaagaagagctaactatcctaaatatatatgcacccaatacaggaacacccagattcataaagcaagtccttagagacctacaaagagaattagact-ccacacaataataacgggagactttaacaccccactgtcaatattagacagatcaacgagacagaacattaacaacgatatccaggacttgaactcagcactggaccaagcagacctaatagacatctacagaactctccacctcaaatcaacagaatatacattcttctcagcaccacattgcacttattccaaaattgaccacaaagttggaggtaaagcactcctcagcaaatgtacaagaatagaaatcaaaacaaacttgtctctcagaccacagagcaatcaaattagaactcaggattaagaaactcatttgaaactgcacaactacatggaaacagaacaacttgctcctgaatgactactgggtaaataacaaaatgaagacagaaataaagatgttctttgacaccaatgagaacaaagatacaacgtaccagaatatctgggacacattt-aaagcagtgtgtagagggaaatttatagcactaaatgcccataagagaaaggaggaaagatctaaaattgacaccctaacatcacaattaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataactaagatcagagcagaactgaaggagatagaaacacaaaaacctttcaaaaaaatcaatgaatccaggagctga-ttttttgaaaaga-aaacaaaattgatagaccactagcaagatgaataaaaaagaaaagagagaagaatcaaatagatgcaatgaaaaatgataaaggggatatcaccactgaccccacagaaatacaaactaccatcagagaatactataaacacctctatgcaaataaactagtaaatctagaagaaatggataaattcctggacacagacacgctcctaagactaaatcaggaagaagttaaatccctgaatagaccagtaacaggctttgaaattggggcaataattaatagcctaccaaccaaaagaagtccaggaccagatgaattcacagccgaattctaccagagctacaaagaggagctggtcggattccttctgaaactattccaatcaatagaaaaagaggggcttatccctaactcattttatgaggccagcaccatcctgataccaaagcctggcagagacatgacaaaaaaagagaattttagaccaatatccctgatgaacatctgtgcaaaattcctcaataaaatactggcaaactgaatccagcagcatatcaaaaagcttatccaccaagatcaagttggcttcatccctgggatgcaaggcgtgttcaacatacataaatcaataaatgtaatccatcacataaacggaaccaaagacaaaaaccacatgattatctcaatagatgcagaaaaggccttcaacaaaattcagcatcacttcatgctaaaaactctcaataaactaggtattgatgggacgtatctcaaaataataagagctatttatgacaaacccacagccaatatcatactgaatgggcaaaacctggaagcattccctttgaaaagtggcacaagacaaggatgccctctctcattactcctgttcaacatagtgttggaagttctggccagggcaatcaggcaggagaaagaaataaagagtattcaattaggaaaagaggaagtcaatttgtccctgtttgcagatgacatgattgtatatttagaaaaccccatcgtctcagtccacaatctccttaagctgataagcaacttcagcaaagtctcaggataccaaatcaatgagcaaaaatcacaagcattcctatacaccaataacagataaacagagcctaatcataagtgaactcccattcacaatagctacaaagcgaataaaatacctaggaatccaactttcaagggatgtgaaggacctcttcaaggaggactacaaaccactgctcaacaaaataaaagaggacacaaacaaatggaagaacattccatgcttatggataggaagaatcaatatcgtgaaaatggccatactgcccaatgtaatttatagattcagtgccatctgcatcaagctaccaataactttcttcacagaattggaaaagactactttaaagttcatatggaaccaaaaaagagcctgcattgccaagacaatcctaagaaaaaagaacaaagctggaggcatcatgctacctgacttcaaactatactacatggctacagtaaccaaaacagcatggtactggtaccaaaatagatacatagaccaatggaacagaacagagccctcagaaataacaccacacatctacaaccatctgatctttgacaaacctgacaaaaacaagaaatggggaaaggattccctatttaataaatggtgctgggaaaactggctggccatatgtagaaagctgaaactggatccattccttacaccttatacaaaaattaattcaagatggattaaagacttaaatgttagacctaaaaccataaaaacc
i macFas5.chr4             C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1821193 7849 -   3067355 I
e manLeu1.NW_012104165v1     1947465 3410 +   2316924 I
e chlSab2.chr17             28269097 1352 -  71996105 I
e cerAty1.NW_012001495v1     1813369 11529 -   2157725 I
e macNem1.NW_012011356v1     1943558 3242 -   2996164 I

a score=972267.000000
s hg38.chr6_GL000254v2_alt    119407 409 +   4827813 ctagaacaaaacctaggcaataccattcaggacataggtatggacaaggacttcatgactaaaacaccaaaagcaatgacaacaaaagccaaaataaacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgggagtaaatttttgcaatctacccatctgacaaagggctaatatccagaatctacaaagaactcaaacaaatttacaag-aaaaaatcaaacaaccccatcaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaaaagacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagatacc
s panTro5.chr6              29099579 409 + 175400573 ctagaacaaaacctaggcaataccattcaggacataggtatggacaaggacttcatgactaaaacaccaaaagcaatgacaacaaaagccaaaataaacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgggagtaaatttttgcaatctacccatctgacaaagggctaatatccagaatctacaaagaactcaaacaaatttacaag-aaaaaatcaaacaaccccatcaaaaagtgggcaaaggatatgaacaggcacttctcaaaagaagacatttatgcagccaaaagacacatgaaaaaatgctcatcatcactggtcatcagagaaatgcaaatcaaaaccacagtgagatacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29333932 409 + 173848474 ctagaacaaaacctaggcaataccattcaggacataggtatggacaaggacttcatgactaaaacaccaaaagcaatgacaacaaaagccaaaataaacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgggagtaaatttttgcaatctacccatctgacaaagggctaatatccagaatctacaaagaattcaaacaaatttacaag-aaaaaatcaaacaaccccatcaaaaagtgggcaaaggatatgaacaggcacttctcaaaagaagacatttatgcagccaaaagacacatgaaaaaatgctcatcatcactggtcatcagagaaatgcaaatcaaaaccacagtgagatacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5134108 408 +   6154872 ctagaacaaaacctaggcaataccattcaggacataggtatggacaaggacttcatgactaaaacaccaaaagcaatgacaacaaaagccaaaataaacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgggagaaaatttttgcaatctactcatctgacaaagggctaatatccagaatctacaaagaactcaaacaaatttacaag--aaaaatcaaacaaccccatcaaaaagtgggcaaaggatataaacaggcacttctcaaaagaagacatttatgcagccaaaagacacatgaaaaaatgcttatcatcactggtcatcagagaaatgcaaatcaaaaccacaatgagatact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74135538 409 + 122973662 ctagaagaaaacctaggcaataacattcagcacatacgcatggacaaggacttcatgactaaaacacaaaaagcaacagcaacaaaaaccaaaattgacaaatggaatctaattaaactaaagagcttctgcacagcaaaagaaaccaccatcagagtgaacaggcaacctacagaatgggagaaaatttttgcgatctacccatctgacaaagggctaatatccagaatctacaaagaacttaaataaatttacaag-aaaaaatcaaacaaccccatcaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccagcaaacacatgaaaaaatgctcatcatcactgatcatcagacaaaggcaaatcaaaaccacaatgagatacc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29315179 410 + 172585720 ctagaagaaaacctaggcaataccattcaggacatagtcatggacaaggacttcatgactaaaacacaaaaagcaatggcaacaaaaggcaaaatagacaaatgggatccaattaaactaaagagcttctgcacagcaaaagaaaccaccatcagagcagacaggcaacctatcaaatggaagaaaatttttgcaatctacccatctgacaaagggctaatatccagaatctacaaagaacttaaataaatttacaagaaaaaaatcaaacaaccccatcaaaaagtgggcaaagtatatgaacggacacatctcaaaagaagacatttatgtagccaacagacacacgaaaaaatgctcatcatcacgggtcatcagagaaatgcaaatcaaaaccacaatgagatacc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28975691 410 - 170955103 ctagaagaaaacctaggcaataccattcaggacatagtcatggacaaggacttcatgactaaaacacaaaaagcaatggcaacaaaaggcaaaatagacaaatgggatccaattaaactaaagagcttctgcacagcaaaagaaaccaccatcagagcagacaggcaacctatcaaatggaagaaaatttttgcaatctacccatctgacaaagggctaatatccagaatctacaaagaacttaaataaatttacaagaaaaaaatcaaacaaccccatcaaaaagtgggcaaagtatatgaacggacacatctcaaaagaagacatttatgtagccaacagacacacgaaaaaatgctcatcatcactggtcatcagagaaatgcaaatcaaaaccacaatgagatacc
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28270449 409 -  71996105 ctagaagaaaatctaggcaatagtattcaggacataggcatggac-aggacttcatgactaaaacaccaaaagcaatggcaacaaaaggcaaaatagacaaatgggatccaattaaactaaagagcttctgcacagcaaaagaaaccaccatcagagcaaacaggcaacctaccaaatggaagaaaatttttgcaatctacccatccaacaaacggttaatatccagattctacaaagaacttaaataaatttacaagaaaaaaatcaaacaaccccatcaaaaagtgggcaaaggatatgaacagacatatctcaaaagaagacatttatgcagccaacagacacacgaaaaaatgctcatcatcactagtcatcagagaaatgcaaatcgaaaccacaatgagatacc
i chlSab2.chr17            I 1352 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1821193 7849 -   3067355 I
e manLeu1.NW_012104165v1     1947465 3410 +   2316924 I
e cerAty1.NW_012001495v1     1813369 11529 -   2157725 I
e macNem1.NW_012011356v1     1943558 3242 -   2996164 I

a score=1139059.000000
s hg38.chr6_GL000254v2_alt    119816 363 +   4827813 atctcacaccagttagaatggtgatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaatgcttttacactgttggtgggactgtaaactagttcagccatcgtggaagacagtgtgataattcctcaaggatctagaactagaaatactatttgactcagcaatcccattactgggtatatacccaaaggattataaattatgctactataaagacacatgcacacatatgtttattgcggcactattcacaatagcaaagacttggaa-caacccaaatatccatcaatgatagactggattaggaaaatgtggcacatatacaccatggaatactatgcagc
s panTro5.chr6              29099988 363 + 175400573 atctcacaccagttagaatggcgatcattaaaaagtcaggaaacaacacgtgctggagaggatgtggagaaataggaatgcttttacactgttggtgggactgtaaactagttcagccatcgtggaagacagtgtgataattcctcaaggatctagaactagaaataccatttgactcagcaatcccattactgggtatatacccaaaggattataaattatgctactataaagacacatgcacacatatgtttattgcggcactattcacaatagcaaagacttggaa-caacccaaatattcatcaatgatagactggattaggaaaatgtggcacatatacaccatggaatactatgcagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29334341 363 + 173848474 atctcacaccagttagaatggcgatcattaaaaagtcaggaaacaacaggtgctggagaggatgtgcagaaataggaatgcttttacactgttggtgggactgtaaactagttcagccatcgtggaagacagtgtgataattcctcaaggatctagaactagaaataccatttgactcagcaatcccattactgggtatatacccaaaggattataaattatgctactataaagacacatgcacacatatgtttattgcggcactattcacaatagcaaagacttggaa-caacccaaatattcatcaatgatagactggattaggaaaatgtggcacatatacaccatggaatactatgcagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5134516 364 +   6154872 atgtcacaccagttagaatggcgatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcagctatcgtggaagacagtgtgataattcctcaaggatctagaactagaaataccatttgactcagcaatcccattactggatatatacccaaaggattataaattatgctactataaagacacatgcacacatatgtttattgcggcactattcacaatagcaaagacttggaaccaacccaaatatccatcaatgatagactggattaggaaaatgtggcacatatacaccatggaatactatgcagc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74135947 364 + 122973662 atctcacaccagttagaatggcaatcattaaaaagtcaggaaacgataggtgctggagaggatgtggagaaataggaatgcttttacactgttggtgggagtgtaaactagttcagccattgtggaagacagtgtgatgattccttaaggatctagaactagaaataccatttgactcagcaatccctttactgggtatatgcccaaaggattataaatcatgctactataaagacacatgcacacgtatgtttattgtggcactattcacaacagcaaagacttggaaccaacccaaatgtccatcaatgatagactggattaggaaaatgtggcacatatacaccatggaattctatgcagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29315589 364 + 172585720 atctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatatggagaaataggaatgcttttacaccattgttgggactgtaaactcgttcagccattgtggaagacagtgtgatgattcctcaaggatctagaactagaaataccatttgactcagcagtcccattactgggtatatacccaaaggattataaatcatgctactataaagacacattcacatgtatgtttattgcggcactattcacaatagtaaagacttggaaccaacccaaatgtccatcaatgatagactggattaggaaaatgtagcacatacacaccatggaatactatgcagt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28976101 364 - 170955103 atctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaatgcttttacaccattgttgggactgtaaactcgttcagccattgtggaagacagtgtgatgattcctcaaggatctagaactagaaataccatttgactcagcagtcccattactgggtatatacccaaaggattataaatcatgctactataaagacacattcacatgtatgtttatcgcggcactattcacaatagtaaagacttggaaccaacccaaatgtccatcaatgatagactggattaggaaaatgtagcacatacacaccatggaatactatgcagt
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28270858 364 -  71996105 atctcacaccagttagaatggcgatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggacaaataggaatgcttttacaccattgttgggactataaactagttcaaccattgtagaagacagtgtggcgattcctcaaggatctagaactagaaataccatttgactcagcagtcccattactggatatatacccaaaggattataaatcatgttgctataaagacacattcacacgtgtgtttattgtggcactattcacaatagtaaagacttggaaccaacccaaatgtccatcaataatagactggattaggcaaatgtagcacatacacaccatggaatactatgcagt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1950875 364 +   2316924 atctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaatgcttttacaccattgttgggactgtaaactcgttcagccattgtggaagacagtgtgatgattcctcaaggatctagaactagaaataccatttgactcagcagtcccattactgggtatatacccaaaggattataaatcatgctactataaagacacatttacatgtatgtttattgtggcactattcacaatagtaaagacttggaaccaacccaaatgtccatcaatgatagactggattaggaaaatgtagcacatacacaccatggaatactatgcagt
i manLeu1.NW_012104165v1   I 3410 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1821193 7849 -   3067355 I
e cerAty1.NW_012001495v1     1813369 11529 -   2157725 I
e macNem1.NW_012011356v1     1943558 3242 -   2996164 I

a score=1568402.000000
s hg38.chr6_GL000254v2_alt    120179 439 +   4827813 cataaaaaaggatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaaccataacaaggacagaaaacaaaacacctcatgttctcactcat-ggggggaattgaacaataagaacacttggacacaggaaggggaatgtcacacaccagggcctgtcgtggagtgggttagtggggagggatagcattaggagaaatacctaatgtaaataacaagttaatgggtgcaggataccaacatggcacgtgtatacatatgtaacaaacctgcacattgtgcacatgtaccctagaacttaaagtac-----aaaaaat--aagagaaTAAAATATTTCCCCCCTTAGACCTGAGCCCTGATAGTATTTATTTAT--------ATTTCTGACCCCCTACTACAGCTTCTTAC-TTTTGACAATTGTCC---------------ttttt------ttt
s panTro5.chr6              29100351 454 + 175400573 cataaaaaaggatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaaccataacaaggacagaaaacaaaacaccgcatgttctcactcat-ggggggaattgaacaataagaacacttggacacaggaaggggaatgtcacacaccagggcctgtcgtggagtgggttagcggggagggatagcattaggagaaatacctaatgtaaatgacaagttaatgggtgcaggataccaacatggcaagtgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtac-----aaaaaat--aagagaaTAAAATACTTCCCCCCTTAGACCTGAGCCCTGATAGTATTTATTTAT--------ATTTCTGACCTCCTACTACAGCTTCTTAC-TTTTGACAATTGTCCtttttttttttttttttttt------ttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29334704 453 + 173848474 cat-aaaaaggatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaaccataacaaggacagaaaacaaaacaccgcatgttctcactcat-ggggggaattgaacaataagaacacttggacacaggaaggggaatgtcacacaccagggcctgtcgtggagtgggttagcggggagggatagcattaggagaaatacctaatgtaaatgacaagttaatgggtgcaggataccaacatggcacgtgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtac-----aaaaaat--aagagaaTAAAATACTTCCCCCCTTAGACCTGAGCCCTGATAGTATTTATTTAT--------ATTTCTGACCCCCTACTACAGCTTCTTAC-TTTTGACAATTGtttccttttttttttttttttnt------ttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5134880 450 +   6154872 cataaaaaaggatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaaccataacaaggacagaaaacaaaacaccacatgttctcactcat-ggggagaattgaacaataagaacactcggacacaggaaggggaatgtcacacaccagggcctgtcgtggagtggtttagcggggagggatagcattaggagaaatacctaatgtaaatgacaagttaat-ggtgcaggacaccaacatggcacgtgtatacatatgtaacaaacctgcacattgtgcacatgtaccctagaacttaaagtac-----aaaaaat--aagagaaTAAAATATTTCTCCCCTTAGACCTGAGCCCTGATA-TATTTATTTAT--------ATTTCTGACCCCCTACTACAGCTTCTTAC-TTTTGACAATTGTCC--tttttttttttttttttt------ttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74136311 438 + 122973662 cattaaaaaggatgagttcatgtcctttgtagggacatgggtgaagctggaaaccatcatgctcagcaaaccataacaaggacagaaaagcaaacactgcatattctcactcataggggggaattgaacaatgagaacatttagacacagggcagggaacatcacaccccggggcctgtcgtggggtgggttagcagggagggatagcattaggagaaatacctaatgtaaatgacaagttaatgagtgcaggacaccaacatggcacgtgtatacatatgtaacaaacctgcacattgtgcacatgtaccctagaacttaaagtac-----aaaaaataaaagagaaTAAAATATTTCCCCCCTTAGACCTGAGCCCTGATAGTATTTATTTAT--------AGTTCTGATCCCCTACTAT-GCTTCTTACTTTTTGACAAtt-------------------ttttt------ttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29315953 452 + 172585720 cataaaaaaggatgagttcatgtcctttttggggacatggatgaagctggaaaccatcattctgaacgaactataacaaggacagaaaaccaaacaccacatgttctcactcatagaggggaattgaacaatgagaacacttggacacagggcggggaacatcacacaccacggcc-gtcatcaggtgggttagcggggagggatagcattaggagtaacacctaatgtaaatgacgagttaat-tatgcaggacaccaacatggcacatgtatacatatgtaacaaacctgcacattgtgcacatgtaccctagaacttaaagtataaaaaaaaaaag--aagaGAATAAAATATTTTCTCCCTTAGACCTGAGGCCTGATAGTATTTATTTATAGGTCTGAAGTTCTGACCCCCTACTATAGCTTCTTACTTTTTGACAATTATCC---------------ttttt------ttt
i rheMac8.chr4             C 0 I 11
s macFas5.chr4              28976465 451 - 170955103 cataaaaaaggatgagttcatgtcctttttggggacatggatgaagctggaaaccatcattctgaacgaactataacaaggacagaaaaccaaacaccacatgttctcactcatagaggggaattgaacaatgagaacacttggacacagggcggggaacatcacataccacggcc-gtcatcaggtgggttagcggggagggatagcattaggagtaacacctaatgtaaatgacgagttaat-tatgcaggacaccaacatggcacatgtatacatatgtaacaaacctgcacattgtgcacatgtaccctagaacttaaagtat-aaaaaaaaaag--aagaGAATAAAATATTTTCTCCCTTAGACCTGAGCCCTGATAGTATTTATTTATAGGTCTGAAGTTCTGACCCCCTACTATAGCTTCTTACTTTTTGACAATTATCC---------------ttttt------ttt
i macFas5.chr4             C 0 I 11
s cerAty1.NW_012001495v1     1824898 451 -   2157725 cataaaaaaggatgagttcatgtcctttttggggacatggatgaagctggaaaccatcattctgaacgaactataacaaggacagaaaaccaaacaccacatgttctcactcatagaggggaattgaacaatgagagcagttggacacagggcggggaacatcacacaccagggcc-gtcatcaggtgggttagcagggagggatagcattaggagtaacacctaatgtaaatgacaagttaat-tatgcaggacaccaacatggcacatgtatacatatgtaacaaacctgcacattgtgcacatgtaccctagaacttaaagtat-ataaaaaaaag--aagaGAATAAAATATTTTCTCCCTTAGACCTGAGCCCTGATAGTATTTATTTATAGGTCTGAAGTTCTGACCCCCTACTATAGCTTCTTACTTTTTGACAATTATCC---------------ttttt------tat
i cerAty1.NW_012001495v1   I 11529 I 13
s chlSab2.chr17             28271222 453 -  71996105 cttaaaaaaggatgagttcatgccctttttggggacatggatgaagctggaaaccatcattctgaacaaactacaacaaggacagaaaatcaaacactgtatgttctcactcataggggggaattgaacaatgagaacacttggacacagggcggggaacatcacacaccagggcctgtcgtcaggtgggttagcagggagggatagcattagaagtaacacctaatgtaaatgatgagttaat-tatgcaggacaccaacatggcacatgtatacatatgtaacgaacctgcacattgtgcacatgtaccctagaacttaaagtataaaaaaaaaaag--aagaGAATAAAATATTTTCCCCCTTAGACCTGAGCCCTGATAGTATTTATTTATAGTTCTGAAGTTCTGACCCCCTACTACAGCTTCTTACTTTTTGACAATTATCC---------------Ctttt------ttt
i chlSab2.chr17            C 0 I 9
s manLeu1.NW_012104165v1     1951239 457 +   2316924 cataaaaaaggatgagttcatgtcctttttggggacatggatgaagctggaaaccatcattctgaatgaactataacaaggacagaaaaccaaacaccacatgttctcactcatagaggggaattgaacaatgagagcagttggacacagggcggggaacatcacacaccagggcc-gtcatcaggtggtttagcggggagggatagcattaggagtaacacctaatgtaaatgacgagttaat-tatgcaggacaccaacgtggcacatgtatacatatgtaacaaacctgcacattgtgcacatgtaccctagaacttaaagtat-aaaaaaaaaag--aagaGAATAAAATATTTTCTCCCTTAGACCTGAGCCCTGATAGTATTTATTTATAGGTCTGAAGTTCTGACCCCCTACTATAACTTCTTACTTTTTGACAATTATCC---------------ttttttatttattt
i manLeu1.NW_012104165v1   C 0 I 9
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1821193 7849 -   3067355 I
e macNem1.NW_012011356v1     1943558 3242 -   2996164 I

a score=3725926.000000
s hg38.chr6_GL000254v2_alt    120618 802 +   4827813 tttttgagattgaggctcgctctgtcacccaggctggattgcaacagcgcaatctcagctcactgcaacctccacctcccaggttccagtgattatcctgtctcagactctcaagtagctgggattacaggcggctgtcactatgcctggctaa-ttttttgtatttttagtagagaaggggttttgccatattggccaggctggtctcaaactcctgacctcaagtgatcctcccacctcggcctcccaaagtgctgggattacaggcatgagccaccatgcccagccAATTGTCCTTTTTCTAACACAAAATACTTCCATGGTCTGAGCACCGTGAATGAGGCTGTCAAACTGGAAAAGTGAGttaagctgagatgcagacctgccaaagtctcaaccaacaccatagggagcactGGATTACATATGGCCTATACTCCTGTGGTGCCAAAACGACAAATCTTTTTACTCCACTGCAATCAATTGTTGAAGGTGCATCATCCCAGGAAGGGTGTGCTTTTGGGAGAATCAACTCTCTGCACCTGAGATAAACCCTAGAACATTggcagcactccaaacaactaagggaaatgagtccttctttgagagggaatgtaggtggcATTTCTCCATGTCTTATATAtctcagttattatttattcaaatattgcctctgctctattgtctttcatccattaaaaattctaattaaatatatattagatctccttatcctctcttctattaataccattattttgcatctccatactttgttctgaataattactttttgttttt---t
s panTro5.chr6              29100805 800 + 175400573 tttttgagattgaggctcactctgtcacccaggctggattgcaacagcgcaatctcagctcactgcaacctccacctcccaggttccagtgattatcctgtctcagactctcaagtagctgggattacaggcggctgtcactatgcctggctaa-ttttttgtatttttagtagagaaggggttttgccatattggccaggctggtctcaaactcctaacctcaagtgatcctcccacctcggcctcccaaagtgctgggattacaggcatgagccaccatgcccagccAATTGTCCTTTTTCTAACACAAAATACTTCCATGGTCTGAGCACTGTGAATGAGGCTGTCAAACTGGAAAAGTGAGttaagctgagatgcagacctgccaaagtctcaaccaacaccatagggagcactGGATTACATATGGCCTATACTCCTGTGGTGCCAAAACGACAAATCTTTTTACTCCACTGCAATCAATTGTTGAAGGTGCATCATCCCAGGAAGGGTGTGCTTTTGGGAGAATCAACTCTCTGCACCTGAGATAAACCCTAGAACATTggcagcactccaaacaactaagggaaatgagtccttctttgagagggaatgtaggtggcATTTCTCCATGTCTTATATAtctccgttattatttattcaaatattgcctctgctctattgtctttcatccattaaaaattctaattaaatatatattagatctccttatcctctcttctattaataccattattttgcatctccatactttgttctgaataatt--ttttttttttt---t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29335157 795 + 173848474 ttttgagtattgaggctcgctctgtcacccaggctggattgcaacagcgcaatctcagctcactgcaacctccacctcccaggttccagtgattatcctgtctcagactctcaagtagctgggattacaggcggctgtcactatgcctggctaa-ttttttgtatttttagtagagaaggggttttgccatattggccaggctggtctcaaactcctgacctcaagtgatcctcccacctcggcctcccaaagtgctgggattacaggcatgagccaccatgcccagccAATTGTCCTTTTTCTAACACAAAATACTTCCATGGTCTGAGCACTGTGAATGAGGCTGTCAAACTGGAAAAGTGAGttaagctgagatgcagacctgccaaagtctcaaccaacaccatagggagcactGGATTACATATGGCCTATACTCCTGTGGTGCCAAAATGACAAATCTTTTTACTCCACTGCAATCAATTGTTGAAGGTGCATCATCCCAGGAAGGGTGTGCTTTTGGGAGAATCAACTCTCTGCACCTGAGATAAACCCTAGAACATTggcagcactccaaacaactaagggaaatgaatctttctttgagagggaatgtaggtggcATTTCTCCATGTCTTATATAtctccgttattatttattcaaatattgcctctgctctattgtctttcatccattaaaaattctaattaaatatatattagatctccttatcctctcttctattaataccattattttgcatctccatactttgttctgaa-------ttttttttttt---t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5135330 799 +   6154872 tttttgagattgaggcttgctctgtcacccaggctggattgcaacagcgcaatctcagctcactgcaacctccacctcccaggttccagtgattatcctgtctcagactctcaagtagctgggattacaggcggctgtcactatccctggctaa-ttttttgtatttttagtagagaaggggttttgccatattggccaggctggtctcaaactcctgaccccaagtgatcctcccacctcggcctcccaaagtgctgggattacaggcatgagccaccatgcccagccAATTGTCCTTTTTCTAACACAAAATACTTCCATGGTCTGAGCACTGTGAATGAGGCTGTCAAACTGGAAAAGTGAGttaagctgagatgcagacctgccaaagtctcaaccaacaccatagggagcactGGATTACATATGGCCTATACTCCTGTGGTGCCAAAACGACAAATC-TTTTACTCCACTGCAATCAATTGTTGAAGGTGCATCATCCCAGGAAGGGTGTGCTTTTGGGAGAATCAACTCTCTGCACCTGAGATAAACCCTAGAACATTggcagcactccaaacaactaagggaaatgagtccttctttgagagggaatgtaggtggcATTTCTCCATGTCTTATATAtctcagttattatttattcaaatattgcctctgctctattgtctttcatccattaaaaattctaattaaatatatattagatctccttatcctctcttctattaataccattattttgcatctccatactttgttctgaataatt--acttttttttt---t
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74136749 797 + 122973662 tttttgagatggaggcttgctctgtcacccaggctggattgcaacagtgcaatctcagctcaccacaacctccacctcccaggttccagtgactatcctgcctcagcctcccaagtagctgggattacaggtgcctgtcactacccctggctaa-ttttttgtatttttagtagagaaggggtttagccatgttggccaggctggtctcaaactcctgacctcaagtgatcctcccacctcggcctcccaaagtgctgggattacaggcatgagccaccatgcccagtcAATTGTCCTTTTCCTAACACAAAATACTTCCATGGTCTGAGCACTGTGAATGAGGCTGTCAAACTGGAAAAGTGagttaagctgagatgcagacctgccaaagtctcaaccaacaccatagggagcactggattacatatggcctatactcctgtggtgccaaaacgacaaatctttctactccactgcaatcaattgttgaaggtgcatcatcccaggaagggtgtgcttttgggagaatcaactctctgcagctgagataaaccctagaacattggcagcactccaaacaactaaggcaaatgaatccttc---gagagggaatataggtggcATTTCTCCATGTCTTATATAtctcagttgttatttattcaaatattgcctctgctctattgtctttcatccattaaagattctaattaaatatatattagatctccttatcctctcttctattaataccattattttgtatctccatactttgttctgaataatt--ttttttttttt---t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29316416 785 + 172585720 tttttgagatagaggctcactgtgtcacccaggctggattgcaatagctcaatctcagctcgctgcagtcttcacctcccaggtcccagtgattctcctgcctccgcctcccaagtagctgggattacaggtgcctgtcactacacctggctaatttttttgtatttttagtagagacggggttttgccatgttggccaggctgctctcaaactcctgacctcaagtgatccacccaccttggcctcccaaagtgctgggattacaggcatgaaccaccgtgcccagccAATTGTCCTTTTTCTAACACAAAATACTTCCATGGTCTGAGCATTGTGAATGAGGCTGTCCAACTGGAAAAGTGagttaagctgagatgcagacctgccaaagtctcaaccaacaccatggggagcaccggattacatatagcctatactcttgtggtgccaacatgacaaacctttttactccactgcaatcaattgttgaaggtgtatcatcccaggaagggtgtgcttttgggagaatcaactttctgcagctgagataaaccttagaacattggcagcactccaaacaactaaggtaattgagtccttctttgagagggaaggtaggtggcATTTCTCCATGTCTTATA---------------TTAttcatatattgcctctgccctattgtctctcatccattaaagattctaattaaatatatattggatctccctatcctctcttctattaataccattattttgtatctccatactttgttctgaataatt--ctttttttttt----
i rheMac8.chr4             I 11 C 0
s macFas5.chr4              28976927 785 - 170955103 tttttgagatagaggctcactgtgtcacccaggctggattgcaatagctcaatctcagctcgctgcagtcttcacctcccaggtcccagtgattctcctgcctccgcctcccaagtagctgggattacaggtgcctgtcactacacctggctaatttttttgtatttttagtagagacggggttttgccatgttggccaggctgctctcaaactcctgacctcaagtgatccacccaccttggcctcccaaagtgctgggattacaggcatgaaccaccgtgcccagccAATTGTCCTTTTTCTAACACAAAATACTTCCATGGTCTGAGCATTGTGAATGAGGCTGTCCAACTGGAAAAGTGAGttaagctgagatgcagacctgccaaagtctcaaccaacaccatggggagcactGGATTACATATAGCCTATACTCTTGTGGTGCCAACATGACAAACCTTTTTACTCCACTGCAATCAATTGTTGAAGGTGTATCATCCCAGGAAGGGTGTGCTTTTGGGAGAATCAACTTTCTGCAGCTGAGATAAACCTTAGAACATTGGCAGCACTCCAAACAACTAAGGTAATTGAGTCCTTCTTTGAGAGGGAAGGTAGGTGGCATTTCTCCATGTCTTATA---------------TTAttcatatattgcctctgccctattgtctctcatccattaaagattctaattaaatatatattggatctccctatcctctcttctattaataccattattttgtatctccatactttgttctgaataatt--ctttttttttt----
i macFas5.chr4             I 11 C 0
s macNem1.NW_012011356v1     1946800 785 -   2996164 tttttgagatagaggctcactgtgtcacccaggctggattgcaatagctcaatctcagctcgctgcagtcttcacctcccaggtcccagtgattctcctgcctccgcctcccaagtagctgggattacaggtgcctgtcactacacctggctaatttttttgtatttttagtagagacggggttttgccatgttggccaggctgctctcaaactcctgacctcaagtgatccacccacctcggcctcccaaagtgctgggattacaggcatgaaccaccgtgcccagccAATTGTCCTTTTTCTAACACAAAATACTTCCATGGTCTGAGCATTGTGAATGAGGCTGTCCAACTGGAAAAGTGagttaagctgagatgcagacctgccaaagtctcaaccaacaccatggggagcactggattacatatagcctatactcttgtggtgccaaaatgacaaacctttttactccactgcaatcaattgttgaaggtgtatcatcccaggaagggtgtgcttttgggagaatcaactttcttcagctgagataaaccttagaacattggcagcactccaaacaactaaggtaattgagtccttctttgagagggaaggtaggtggcATTTCTCCATGTCTTATA---------------TTAttcatatattgcctctgccctattgtctctcatccattaaagattctaattaaatatatattggatctccctatcctctcttctattaataccattattttgtatctccatactttgttctgaataatt--ctttttttttt----
i macNem1.NW_012011356v1   I 3242 C 0
s cerAty1.NW_012001495v1     1825362 785 -   2157725 tttttgagatagaggctcactgtgtcacctaggctggattgcaatagctcaatctcagctcgctgcagtcttcacctcccaggtcccagtgattctcctgcctccacctcccaagtagctgggattacaggtgcctgtcactacacctggctaatttttttgtatttttagtagagacggggttttgtcatgttggccaggctgctctcaaactcctgacctcaagtgatccacccacctcggcctcccaaagtgctgggattacaggcatgaaccaccgtgcccagccAATTGTCCTTTTTCTAACACAAAATACTTCCATGGTCTGAGCATTGTGAATGAGGCTGTCCAACTGGAAAAGTGagttaagctgagatgcagacctgccaaagtctcaaccaacaccatggggagcactggattacatatagcctatactcttgtggtgccaaaatgacaaacctttttactccactgcaatcaattgttgaaggtgtatcatcccaggaagggtgtgcttttgggagaatcaactttctgcagctgagataaaccttagaacattggcagcactccaaacaactaaggtaattgagtccttctttgagagggaaggtaggtggcATTTCTCCATGTCTTATA---------------TTAttcatatattgcctctgccctattgtctctcatccattaaagattctaattaaatacatattggatctccctatcctctcttctattaataccattattttgtatctccatactttgttctgaataatt--ctttttttttt----
i cerAty1.NW_012001495v1   I 13 C 0
s chlSab2.chr17             28271684 787 -  71996105 tttttgagatagaggctcactgtgtcaccctggctggattgcaatagcgcaatctcagctcactgcaaccttcacctcccaggtcctggtgattctcctgcctcagtttcccaagtagctgggattacaggtgcccgtcactacgcctggctaa-ttttttatatttttagtagagacggggttttgccatgttggccaggctggtctcaaactcctgacctcaagtgatccacccaccttggcctcccaaagtgctgggattacaggcatgaaccaccatgcccagccAATTGTCCTTTTTCTAACACAAAATACTTCCATGGTCTGAGCACTGTGAATGAGGCTGTCCAACTGGAAAAGTGAGttaagctgagatgcagacctgccaaagtctcaaccaacaccatggggagcactGGATTACATATAGCCTATACTCTTGTGGTGCCAAAATGACAAACCATTTTACTCCACTGCAATCAATTGTTGAAGGTGTATCATCCCAGGAAGGGTGTGCTTTTGGGAGAATCAACTTTCTGCAGCTGAGATAAACCTTAGAACATTGGCAGCGCTCCAAACAACTAAGGCAATTGAGTCCTTCTTTGAGAGGGAATGTAGGTGGCATTTCTCCATGTCTTATA---------------TTATTCATATATTGCCTCTGCTCTATTGTCTCTCATCCATTAAAGATTCTAATTAAATACATATTAGATCTCCCTATCCTCTCTTCTATTAATACCATTATTTTGTATCTCCATACTTTGTTCTGAATAAtt--tctttttttttttt-
i chlSab2.chr17            I 9 C 0
s manLeu1.NW_012104165v1     1951705 787 +   2316924 tttttgagatagaggctcactgtgtcacccaggctggattgcaatagctcaatctcagctcgctgcagtcttcacctcccaggtcccagtgattctcctgcctccgcctcccaagtagctgggattacaggtgcctgtcactacacctggctaatttttttgtatttttagtagagacggggttttgtcatgttggccaggctgctctcaaactcctgacctcaagtgatccacccccctcggcctcccaaagtgctgggatttcaggcatgaaccaccgtgcccagccAATTGTCCTTTTTCTAACACAAAATACTTCCATGGTCTGAGCATTGTGAATGAGGCTGTCCAACTGGAAAAGTGagttaagctgagatgcagacctgccaaagtctcaaccaacaccatggggagcactggattacatatagcctatactcgtgtagtgccaaaatgacaaacctttttactccactgcaatcaattgttgaaggtgtatcatcccgggaagggtgtgcttttgggagaatcaactttctgcagctgagataaaccttagaacattggcagcactccaaacaactaaggtaattgagtccttctttgagagggaaggtaggtggcATTTCTCCATGTCTTATA---------------TTATTCATATATTGCCTCTGCCCTATTGTCTCTCATCCATTAAAGATTCTAATTAAATATATATTGGATCTCCCTATCCTCTCTTCTATTAATACCATTATTTTGTATCTCCATACTTTGTTCTGAATAATT--CTTTTTTTTTTTT--
i manLeu1.NW_012104165v1   I 9 I 1804
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1821193 7849 -   3067355 I

a score=995426.000000
s hg38.chr6_GL000254v2_alt    121420 275 +   4827813 tatgagacagagtatcgctctgttgcccaggctggagtaaagtggcacaatctcggctcactgcaagctccgctttctgggttcatgccattttcctgcctcagactcccaagtagctgggactacaggtgcctgccaccacacctggctaattttttgtatttttagtagagatggggtttcaccgagtta-tcatgatggtctcgatctcctgacctcgtgaaccacctgcctcagcctcccaaagtgctgggtttacagatgtgagccaccac
s panTro5.chr6              29101605 274 + 175400573 tttgcaacagagtattgctctgttgcccaggctggagtaaagtggcacaatctcggctcactgcaagctccgctttctgggttcatgccattttcctgcctcagcctcccaagtagctgggactacaggtgcctgccaccacacctggctaa-tttttgtatttttagtagagatggggtttcactgagtta-tcatgatggtctcgatctcctgacctcgtgaaccacctgcctcagcctcccaaagtgctgggtttacagatgtgagccaccac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29335952 275 + 173848474 tttgcgacagagtattgctctgttgcccaggctggagtaaagtggcacaatctcggctcactgcaagctctgctttctgggttcatgccattttcctgcctcagcctcccaagtagctgggactacaggtgcctgccaccacacctggctaattttttgtatttttagtagagatggggtttcactgagtta-tcatgatggtctcgatctcctgacctcgtgaaccacctgcctcagcctcccaaagtgctgggtttacagatgtgagccaccac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5136129 275 +   6154872 tttgagacagagtatcgctctgttgcccaggctggagtaaagtggcacaatctcggctcactgcaagctccgctttctgggttcatgccattttcctgcctcagcctcccaagtagctgggactacaggtgcctgccaccacacctggctaatattttgtatttttagtagagatggggtttcaccgagtta-tcaggatggtctcgatctcctgacctcgtgaaccacccgcctcagcctcccaaagtgctgggtttacagatgtgagccaccac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74137546 275 + 122973662 tttgagacggattctcgctctgtca-ccaggctggagtgcagtggggcgatctcggctcactgcaagctctgccttctgggttcacaccattttcctgcctcagcctcccaagtatctgggactacaggcgcctaccaccacacctggctaatttttggtatttttagtagaaacagggtttcaccgagttagtcaggatggtctcgatctcctgacctcgtgatccacccgcctcagcctcccaaagtgctgggtttacagacgtgagccaccac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29317201 271 + 172585720 ----agacagagtctcgctctgttgcccaggctggagtgcagtggggcgatcttggctcactgcaagctctgcctcctgggttcacgccgttctcctgcctcagcctcccgagtagctgagactacaggcgcctgcccccacgcccggctaaatgtttgtatttttagtagagatggggtttcactgagttagtcaggatggtctccatctcctgacctcatgatccacccgccctggcct-ccaaagtgctgggattacagacatgagccaccac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28977712 272 - 170955103 ----agacagagtctcgctctgttgcccaggctggagtgcagtggggcgatcttggctcactgcaagctctgcctcctgggttcacgccgttctcctgcctcagcctcccgagtagctgagactacaggcgcctgccaccacgcccggctaaatttttgtatttttagtagagatggggtttcactgagttagtcaggatggtctccatctcctgacctcatgatccacccgccctggcctcccaaagtgctgggattacagacatgagccaccac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1947585 272 -   2996164 ----agacagagtctcgctctgttgcccaggctggagtgcagtggggcgatctcggctcactgcaagctctgcctcctgggttcacgccgttctcctgcctcagcctcccgagtagctgagactacaggcgcctgccaccacgcccggctaaatttttgtatttttagtagagatggggtttcactgagttagtcaggatggtctcgatctcctgagctcatgatccacccgccctggcctcccaaagtgctgggattacagacatgagccaccac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1826147 272 -   2157725 ----agacagagtctcgctctgttgcccagactggagtgcagtggggcgatctcggctcactgcaagctctgcctcctgggttcacgccgttctcctgcctcagcctcctgagtagctgagactacaggcgcccgccaccacgcccggctaaatttttgtatttttagtagagatggggtttcactgagttagtcaggatggtctcgatctcctgacctcatgatccacctgcctcggcctcccaaagtgctgggaatacagacatgagccaccac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28272471 272 -  71996105 ----agacagagtcttgctctgttgcccaggctggagtacagtggggcgacctcagctcactgcaagctccgcctcccgggttcacgccgttctcctgcctcagcctcccgagtagctgagactataggcgcccgccaccacgcccggctaaatttttgtatttttagtagagatggggtttcaccgagttagtcaggatggtctcgatctcctgacctcatgatccaccagcctcggcctcccaaagtgctgggattacagacatgagccaccac
i chlSab2.chr17            C 0 I 378
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1821193 7849 -   3067355 I
e manLeu1.NW_012104165v1     1952492 1804 +   2316924 I

a score=1026988.000000
s hg38.chr6_GL000254v2_alt    121695 376 +   4827813 gcccagcgtgttctgaataatttcttctaaattattttccactttactaatactcttttcagttgtgtcaagtttgttgttaatttatccttcaagttcttaattttggttattatatatttcaattacaaataaattttggtttttatttttaaatctacttcgtcagtttttatatttttcaatttgctccttaaattttttagattagcttttgtttctttgaatatagtaagcagttttgttacacccttatctgataatttccaaatctgaagtttagtagattctatttctggtatctgtcatttctTtttctttctttcctttct----tttctctttttct---tttttctttctttctctctttctttc-------------------tctct--
s panTro5.chr6              29101879 376 + 175400573 gcccagcgtgttctgaataatttcttctaaattattttccactttactaatactcttttcagttgtgtcaagtttgttgttaatttatccttcaagttcttaattttggttattatatatttcaattacaaataaattttggtttttatttttaaatctacttcgtcagtttttatatttttcaatttgctccttaaattttttagattagcttttgtttctttgaatatagtaagcagttttgttacacccttatctgataatttccaaatctgaagtttagtagattctatttctggtatctgtcatttctTtttctttctttcctttct----tttctctttttct---tttttctttctttctctctttctttc-------------------tctct--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29336227 375 + 173848474 gcccagcgtgttctgaataatttcttctaaattattttccactttactaatactcttttcagttgtgtcaagtttgttgttaatttatccttcaagttcttaattttggttattatatatttcaattacaaataaattttggtttttatttttaaatctacttcgtcagtttttatatttttcaatttgctccttaaattttttagattagcttttgtttctttgaatatagtaagcagttttgttacacccttatctgataatttccaaatctgaagtttagtagattctatttctggtatctgtcatttctTtttctttctttcctttct----tttctctttttc----tttttctttctttctctctttctttc-------------------tctct--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5136404 377 +   6154872 gcccagcgtgttctgaataatttcttctaaattattttccactttactaatactcttttcagttgtgtcaagtttgttgttaatttatccttcaagttcttaattttggttattatatatttcaattacaaataaattttggtttttatttttaaatctacttcgtcagtttttatatttttcaatttgcaccttaaattttttagattagcttttgtttctttgaatatagtaagcagttttgttacacccttatctgataatttccaaatctgaagtttagtagattctatttctggtatctgtcatttctTtttctttctttcctttct----tttctcttttct----tttttctttctttctctctctctttc-----------------tttctct--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74137821 307 + 122973662 gcccagactgttctgaataatttcttctaaataattttccacttcactaatactcttttcagttgggtcaagtttgctgttaatttaaccttcaagtttttaattttggttactatatatttcagttacaaataaattttggtttttatttttaaatctactttgtcagtttttatatttttcaatttgctccttgaattttttagattagct----tttctttgaatatagtaagctgttttgttacacccttgtctgataatttccagatctgaagtctagtagattctatttctggtatctgtcattt---------------------------------------------------------------------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29317472 399 + 172585720 actgtgcctgttctgaatagtttcttctaaattattttctacttcactaatactttcttcag-tgtgtcaagtttgctgttaatttatccttcaagttcttaattttggttattatatatttcaattgcaaataaaatttggtttttatttttaaatttactttgtcagtttctatatttttcaatttgctccttaaattttttagattagcttctgtttctttgaatatagtaagcagttttgttacccccttgtctgacaatttccagatctaaagttcaatagattctatttctggtatctgtcatttctttctccttctttctttctt----tctccttctttctttctttctctttctttctttccttccttccttccttcttttactttcttctcttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28977984 399 - 170955103 actgtgcctgttctgaatagtttcttctaaattattttctacttcactaatactttcttcag-tgtgtcaagtttgctgttaatttatccttcaagttcttaattttggttattatatatttcaattgcaaataaaatttggtttttatttttaaatttactttgtcagtttctatatttttcaatttgctccttaaattttttagattagcttctgtttctttgaatatagtaagcagttttgttacccccttgtctgacaatttccagatctaaagttcaatagattctatttctggtatctgtcatttctttctccttctttctttctt----tctccttctttctttctttctctttctttctttccttccttccttccttcttttactttcttctcttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1947857 403 -   2996164 actgtgcctgttctgaataatttcttctaaattattttctacttcactaatactttcttcag-tgtgtcaagtttgctgttaatttatccttcaagttcttaattttggttattatatatttcaattacaaataaaatttggtttttatttttaaatttactttgtcagtttctatatttttcaatttgctccttaaattttttagattagcttctgtttctttgaatatagtaagcagttttgttacccccttgtctgacaatttccagatctgaagttcaataggttctatttctggtatctgtcatttctttctccttctttctttctttctctctccttctttctttctttctctttctttctttccttccttccttctttcttttactttcttctcttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1826419 403 -   2157725 actgtgcctgttctgaataatttcttctaaattattttctacttcactaatactttcttcag-tgtgtcaagtttgctgttaatttatccttcaagttcttaattttggttattatatatttcaattacaaataaaatttggtttttatttttaaatttactttgtcagtttctatatttttcaatttgctccttaaattttttagattagcttctgtttctttgaatatagtaagcagttttgttacccccttgtctgacaatttccagatctgaagttcaatagattctatttctggtatctgtcatttctttctccttctttctttctttctttctttctccttctttctttctttctctttctttccttccttccttctttcttttactttcttctcttt
i cerAty1.NW_012001495v1   C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1821193 7849 -   3067355 I
e manLeu1.NW_012104165v1     1952492 1804 +   2316924 I
e chlSab2.chr17             28272743 378 -  71996105 I

a score=1523464.000000
s hg38.chr6_GL000254v2_alt    122071 410 +   4827813 cttttctttcttttctttttttGAgtctgttgtttctgttgattttcacggagacttgtttgttcatgtgtatgcac--gtttgtatgctgggttttgtatttg-aaaaaaa-tatttctagaaataatgtgaagtctaggttaaagttttattccttcagagaggattttcttttgcttcttcagaaacctaga-tgtgctgaaatacagcccaccttaaaccagtgtcaaggtttggggtcttatgggcta-ccagatgatggtaagccaagctgcagtttatgggtgagcaggtttacttacagttcccctttactcctagaaagcagcctcagggggagtgcatgatcaccaatgtcgccactttgggcagccctaggtttctgtttttgttcctctaaccctatgaggcta
s panTro5.chr6              29102255 410 + 175400573 cttttctttcttttctttttttGAgtctgtcgtttctgttgattttcacggagacttgtttgttcatgtgtatgcac--gtttgtatgctgggttttgtatttg-aaaaaaa-tatttctagaaataatgtgaagtctaggttaaagttttattccttcagagaggattttcttttgcatcttcagaaacctaga-tgtgctgaaatacagcccaccttaaaccagtgtcaaggtttggggtcttatgggcta-ccagatgatggtaagccaagctgcagtttatgggtgagcaggtttacttacagttcccctttactcctagaaagcagcctcagggggagtgcatgatcaccaatgtcgccactttgggcagccctaggtttctgtttttgttcctctaaccctatgaggcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29336602 410 + 173848474 cttttctttcttttctttttttGAgtctgtcgtttctgttgattttcacagagacttgtttgttcatgtgtatgcac--gtttgtatgctgggttttgtatttg-aaaaaaa-tatttctagaaataatgtgaagtctaggttaaagttttattccttcagagaggattttcttttgcatcttcagaaacctaga-tgtgctgaaatacagcccaccttaaaccagtgtcaaggtttggggtcttatgggcta-ccagatgatggtaagccaagctgcagtttatgggtgagcaggtttacttacagttcccctttactcctagaaagcagcctcagggggagtgcatgatcaccaatgtcgccactttgggcagccctaggtttctgtttttgttcctctaaccctatgaggcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5136781 409 +   6154872 cttttctttcctttctttttttGAgtctgttgtttctgttgattttcacggagacttgtttgttaatgtgtatgcac--gtttgtatgctgggttttgtatttg-aaaaaaa-tatttctagaaataatgtgaagtctaggttaaagttttattccttcagagaggattttcttttgcatcttcagaaacctaga-tgtgctgaaatacagcccaccttaaaccagtgtcaaggtttggggtcttatgggcta-ccagatgatggtaagccaagctgcagtttatgggtgagcaggtttacttacagttcccctttactcctagaaagcagcctca-ggggagtgcatgatcaccgatgttgccactttgggcagccctaggtttctgtttttgttcctctaaccctatgaggcta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74138128 402 + 122973662 ----------ttttctttttttgtgtctattgtttctgtcgattttcatggagactcgtttgttcatgtgtatgcacatgtttgtatgctggtttttgtatttgaaaaaaaa-tatttctagaaataatgtgaagtctaggttaaagttttattccttcagagaggattttcctttgcatcttcagaaacctaga-tgggctgaaatacagcccaccttaaaccagtgtcaaggtttggggtcttatgggctacccagatgatagtaagccaagctgcagtttatgggtgagcaggtttacttacagtccccctttactcctagaaagcagcctaagtgggagtgcatgatcaccaatgtccccactttgggcagccctgggtttc--tttttgttcctctaaccctatgaggcta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29317871 411 + 172585720 cttttccttcttttctttttttgtgtctgttgtttctgttgattttcacggagacttgtttcttcatgtgtatgcacatgtttatatgctgggttttgtatttg-aaaaaaattatttctagaaataatgtgaagtctaggttaaagttttattccttcagagaggattttgctttgcgtcttcaggaacctacattgtgctgaaatacagcccaccttaaaccaatgtcaaagtttgggggcttatgagctacccagatgatggtaagccaagctgcagtttatgggtgagcaggtttacttacaggccccctttactcctagaaagcaaactaagggg----acataatcaccagtgtccccactttgagcagccctgggtttctgtttttgttcctctagccctatgaggcta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28978383 411 - 170955103 cttttccttcttttctttttttgtgtctgttgtttctgttgattttcatggagacttgtttcttcatgtgtatgcacatgtttatatgctgggttttgtatttg-aaaaaaattatttctagaaataatgtgaagtctaggttaaagttttattccttcagagaggattttgctttgcgtcttcaggaacctacattgtgctgaaatacagcccaccttaaaccaatgtcaaagtttgggggcttatgagctacccagatgatggtaagccaagctgcagtttatgggtgcgcaggtttacttacaggccccctttactcctagaaagcaaactaagggg----acataatcaccagtgtccccactttgagcagccctgggtttctgtttttgttcctctagccctatgaggcta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1948260 411 -   2996164 cttttccttcttttctttttttgtgtctgttgtttctgttgattttcatggagacttgtttcttcatgtgtatgcacatgtttatatgctgggttttgtatttg-aaaaaaattatttctagaaataatgtgaagtctaggttaaagttttattccttcagagaggattttcctttgcgtcttcaggaacctacattgtgctgaaatacagcccaccttaaaccaatgtcaaagtttgggggcttatgagctacccagatgatgataagccaagctgcagtttatgggtgagcaggtttacttacaggacccctttactcctagaaagcaaactaagggg----acataatcaccagtgtccccactttgagcagcccggggtttctgtttttgttcctctagccctatgaggcta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1826822 411 -   2157725 cttttccttctgttctttttttgtgtctgttgtttctgttgattttcatggagacttatttcttcatgtgtatgcacatgtttatatgctgggttttgtatttg-aaaaaaattatttctagaaataatgtgaagtctaggttaaagttttattccttcagagaggattttcctttgcatcttcaggaacctacattgtgctgaaatacagcccaccttaaaccaatgtcaaagtttgggggcttatgagctacccagatgatggtaagccaagctgcagtttatgggtgagcaggtgtacttacaggccccctttactcctagaaagcaaactaagggg----acataatcaccagtgtccccactttgagcagccctgggtttctgtttttgttcctctagccctatgaggctA
i cerAty1.NW_012001495v1   C 0 I 331
s colAng1.NW_012115566v1     1829042 410 -   3067355 cttttccttcttttctttttttgtgtctgttgttcctgttgattttcatggagacttgtttcttcatgtatatgtacatgtttgtatgctgggttttgtatttg-aaaaaaattatttctagaaataatgtgaagtctaggttaaagttttattccttcagagaggattttcctttgcatcttcaggaacctaca-tgtgctgaaatagagcccaccttaaaccaatgtcaaggtttgggggcttatgagctacccagatgatggtaagccaagctgcagtttatgggtgagcaggtttacttacaggccccctttactcctagaaagcagcctaagggg----acatgatcaccagtgtccccactttgggcagccctgggtttctgtttttgttcctctagccctatgaggcta
i colAng1.NW_012115566v1   I 7849 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e manLeu1.NW_012104165v1     1952492 1804 +   2316924 I
e chlSab2.chr17             28272743 378 -  71996105 I

a score=760824.000000
s hg38.chr6_GL000254v2_alt    122481 251 +   4827813 tcagaaacatagataagtctcttggcttctacatccagattacaaatgttgccagggcaaaaggggtcccaactgctagattcacttctctgggtttgtttcttttactgacactcagcaggt--aattgattactagtttattatatttttaatgctttaagaaagaattatttttatatatcacccggctttattgttgtctttaccagggggattatctgaattacctagacatccattatctggaacag
s panTro5.chr6              29102665 251 + 175400573 tcagaaacatagataagtctcttggcttctacatccagattacaaatgctgccagggcaaaaggggtcccaactgctggattcacttctctgggtttgtttcttttactgacactcagcaggt--aattgattactagtttattatatttttaatgctttaagaaagaattatttttatatatcacccggctttattgttgtctttaccagggggattatctgaattacctagacatccattatctggaacag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29337012 251 + 173848474 tcagaaacatagataagtcccttggcttctacatccagattacaaatgctgccagggcaaaaggggtcccaactgctggattcacttctctgggtttgtttcttttactgacactcagcaggt--aattgattactagtttattatatttttaatgctttaagaaagaattatttttatatatcacccggctttattgttgtctttaccagggggattatctgaattacctagacatccattatctggaacag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5137190 250 +   6154872 tcagaaacatagataagtctcttggcttctacatccagattacaaatgttgccagggcaaaagggg-accaactgctggattcacttctctgggtttgtttcttttactgacactcagcaggt--aattgattactagtttattatatttttaatgctttaagaaagaattatttttatatatcacccggctttattgttgtctttaccagggggattatctgaattacctagacatccattatctggaacag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74138530 241 + 122973662 tcagaaacatagataagtctcttggcgtctacgtccagattacaaatgttgccagggcaaaagtggtcccaactgctggattcacttctttgggtttgtttcttttactgaaactcagcaggtaaaattgattactagt---ttatatttttaatgcttt----aagaattatttttatgtatcatccagcttta---ttgtctttaccagggggattatctgaattacctagacatccattatctgga--ag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29318282 247 + 172585720 tcagaaacatagataagtctcttggcctctacatccagattacaaatgttgccaggacaaaagtggtcccaactgctggattcacttctctgggtttgtttcttttactaaaactcagcaggt--aattgattactagtttattatatttttaatgcttt----aagaattatatttatatatcatccagctttattgttgtcttcaccagggggattatctgaattacctagacatccattatctggaaTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28978794 247 - 170955103 tcagaaacatagataagtctcttggcctctacatccagattacaaatgttgccaggacaaaagtggtcccaactgctggattcacttctctgggtttgtttcttttactaaaactcagcaggt--aattgattactagtttattatatttttaatgcttt----aagaattatatttatatatcatccagctttattgttgtcttcaccagggggattatctgaattacctagacatccattatctggaaTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1948671 247 -   2996164 tcagaaacatagataagtctcttggcctctacatccagattacaaatgttgccaggacaaaagtggtcccaactgctggattcacttctctgggtttgtttcttttactaaaactcagcaggt--aattgattactagtttattatatttttaatgcttt----aagaattatatttatatatcatccagctttattgttgtcttcaccagggggattatctgaattacctagacatccattatctggaaTAA
i macNem1.NW_012011356v1   C 0 C 0
s colAng1.NW_012115566v1     1829452 247 -   3067355 tcagaaacatagataagtctcttggcctctacatccagattacaaatgttgccaggacaaaagtggtcccaactgctggattcacttctctgggtttgtttcttttactgaaactcagcaggt--aattgtttactagtttattatatttttaatgcttt----aagaattatttttatatatcatccagctttattgttgtcttcaccagggggattatctgaattacctagacatccattatctggaaTAA
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e manLeu1.NW_012104165v1     1952492 1804 +   2316924 I
e chlSab2.chr17             28272743 378 -  71996105 I
e cerAty1.NW_012001495v1     1827233 331 -   2157725 I

a score=51165.000000
s hg38.chr6_GL000254v2_alt    122732 12 +   4827813 aGTTCTGTCTCT
s panTro5.chr6              29102916 12 + 175400573 aGTTCTGTCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29337263 12 + 173848474 aGTTCTGTCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5137440 12 +   6154872 aGTTCTGTCTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74138771 12 + 122973662 AGTTCTGTCTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29318529 12 + 172585720 AGTTCTGTCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28979041 12 - 170955103 AGTTCTGTCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1948918 12 -   2996164 AGTTCTGTCTCT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28273121 12 -  71996105 AGTTCTGTCTCT
i chlSab2.chr17            I 378 C 0
s colAng1.NW_012115566v1     1829699 12 -   3067355 AGTTCTGTCTCT
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e manLeu1.NW_012104165v1     1952492 1804 +   2316924 I
e cerAty1.NW_012001495v1     1827233 331 -   2157725 I

a score=611981.000000
s hg38.chr6_GL000254v2_alt    122744 127 +   4827813 CTTCACTTGTCTTAATTGAAAACTAGAGTCAGCACCCCTGAATATCAGCGGAATCCACTGCACCATAATCTGTGGATTATGCtgttaaagcgaactaaatatggcctgagaaagattccatactttt
s panTro5.chr6              29102928 127 + 175400573 CTTCACTTGTCTTAATTGAAAACTAGAGTCAGCACCCCTGAATATCAGTGGAATCCACTGCACCATAATCTGTGGATTATGCtgttaaagcgaactaaatatggcctgagaaagattccatactttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29337275 127 + 173848474 CTTCACTTGTCTTAATTGAAAACTAGAGTCAGCACCCCTGAATATCAGTGGAATCCACTGCACCATAATCTGTGGATTATGCtgttaaagcgaactaaatatggcctgagaaagattccatactttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5137452 127 +   6154872 CTTCACTTGTCTTAATTGAAAACTAGAGTCAGCACCCCTGAATATCAGCGGAATCCACTGCACCATAATCTGTGGATTATGCtgttaaagcgaactaaatatggcctgagaaagattccatactttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74138783 127 + 122973662 CTTCACTTGTCTTAATTGAAAACTAGAGTCAGCACCCCTGAGTATCAGCTGAATCCATTGCACCATAATCTGTGGATTATGGtgttaaagcgaactaaatatggcctgagaaagactccatacttct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29318541 126 + 172585720 CTTCACTTGTCTTAATTG-AAACTAGAGTCAGCACCCCTGAATACCAGCTGAATCCATTGCACCATAATCTGTGGATTATGCtgttaaagcaaactaaatatggcctgagaaagattccatacttct
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              28979053 126 - 170955103 CTTCACTTGTCTTAATTG-AAACTAGAGTCAGCACCCCTGAATACCAGCTGAATCCATTGCACCATAATCTGTGGATTATGCtgttaaagcaaactaaatatggcctgagaaagattccatacttct
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     1948930 126 -   2996164 CTTCACTTGTCTTAATTG-AAACTAGAGTCAGCACCCCTGAATACCAGCTGAATCCATTGCACCATAATCTGTGGATTATGCtgttaaagcaaactaaatatggcctgagaaagattccatactttt
i macNem1.NW_012011356v1   C 0 I 320
s chlSab2.chr17             28273133 127 -  71996105 CTTCACTTGTCTTAATTGAAAACTAGAGTCAGTACCCCTGAATACCAGCTGAATCCATTGCACCATAGTCTGTGGATTATGCtgttaaagcaaactaaatatggcctgagaaagatttcatacttct
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012104165v1     1954296 126 +   2316924 cTTCACTTGTCTTAATTG-AAACTAGAGTCAGCACCCCTGAATACCAGCTGAATCCATTGCACCATAATCTGTGGATTATGCtgttaaagcaaactaaatatggcctgagaaagattccatacttct
i manLeu1.NW_012104165v1   I 1804 I 1
s colAng1.NW_012115566v1     1829711 127 -   3067355 CTTCACCTGTCTTAATTGAAAACTAGAGTCAGCACCCCTGAATACCAGCTGAATCCATTGCACCATAATCTGTGGATTATGCtgttaaagcaaactaaatatggcctgagaaagattccatacttct
i colAng1.NW_012115566v1   C 0 I 1
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e cerAty1.NW_012001495v1     1827233 331 -   2157725 I

a score=910.000000
s hg38.chr6_GL000254v2_alt    122871 1 +   4827813 a
s panTro5.chr6              29103055 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29337402 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5137579 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74138910 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1829838 1 -   3067355 I
e manLeu1.NW_012104165v1     1954422 1 +   2316924 I
e chlSab2.chr17             28273260 1 -  71996105 I
e cerAty1.NW_012001495v1     1827233 331 -   2157725 I
e macNem1.NW_012011356v1     1949056 320 -   2996164 I
e macFas5.chr4              28979179 1 - 170955103 I
e rheMac8.chr4              29318667 1 + 172585720 I

a score=1204809.000000
s hg38.chr6_GL000254v2_alt    122872 249 +   4827813 tatttgggtccttgtggaggaattgcaacctagtttaatgggtagacaagattgaaaacctaacttaggaatatgtgcctataacaatagctgagtcttggccaatcccagtggctgtaattcaaccattcatacactgctgagtgttcaaattgtgttcaaataaggcaaaaactgagctgtaacccatccagccattctgtacctcacttccaatttccatatgtcattcc------ttttttttt-ttttttt
s panTro5.chr6              29103056 248 + 175400573 tatttgggtccttgtggaggaattgcaacctagtttaatgggtagacaagattgaaaacctaacttaggaatatgtgcctataacaatagctgagtcttggccaatcccagtggctgtaattcaaccattcatacactgctgagtgttcaaattgtgttcaaataaggcaaaaactgagctgtaacccatccagccattctgtacctcacttccaatttccatatgtcattcc-------tttttttt-ttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29337403 248 + 173848474 tatttgggtccttgtggaggaattgcaacctagtttaatgggtagacaagattgaaaacctaacttaggaatatgtgcctataacaatagctgagtcttggccaatcccagtggctgtaattcaaccattcatacactgctgagtgttcaaattgtgttcaaataaggcaaaaactgagctgtaacccatccagccattctgtacctcacttccaatttccatatgtcattcc-------tttttttt-ttttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5137580 252 +   6154872 tatttgggtccttgtggaggaattgcaacctagtttaatgggtagacaagattgaaaacctaacttaggaatatgtgcctataacaatagctgagtcttggccaatcccagtggctgtaattcaaccattcatacactgctgagtgttcaaattgtgttcaaataaggcaaaaactgagctgtaacccatccagccattctgtacctcacttccaatttccatatgtcgttcc---tttttttttttt-ttttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74138911 255 + 122973662 tatttgggtccttgtggaggaattgcaacctagcttaatgggtagacaagattgaaaacctaatttatgaatatgtgcctacaacaatagctgagtcttggccaatcccaatggctgtaattcaaccattcatacactgctgagtgttcaaactgtattcaaataaggcaaaaaccgagctgtaaccaatccagccattctgtacctcacttccaatttccatatgtcattccttttttttttttttt-ttttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29318668 249 + 172585720 tatttgggtccttgtagaggaattgctacctagcttaatgggtagacaagattgaaaacctaacttaggaatatgtgcctataacaatagctgagtcttggccaatcccagcggctgtaattcaaccattcatacactgctgagtgttcaaactgtgttcaaataagacaaaaactgagctgtaaccaatccagccattctgtacctcacttccaatttccattcgtcattcc------ttttttttc-ttttttt
i rheMac8.chr4             I 1 I 2
s macFas5.chr4              28979180 249 - 170955103 tatttgggtccttgtagaggaattgctacctagcttaatgggtagacaagattgaaaacctaacttaggaatatgtgcctataacaatagctgagtcttggccaatcccagcggctgtaattcaaccattcatacactgctgagtgttcaaactgtgttcaaataagacaaaaactgagctgtaaccaatccagccattctgtacctcacttccaatttccattcgtcattcc------ttttttttc-ttttttt
i macFas5.chr4             I 1 I 2
s macNem1.NW_012011356v1     1949376 250 -   2996164 tatttgggtccttgtagaggaattgctacctagcttaatgggtagacaagattgaaaacctaacttaggaatatgtgcctataacaatagctgagtcttggccaatcccagcggctgtaattcaaccattcatacactgctgagtgttcaaactgtgttcaaataagacaaaaactgagctgtaaccaatccagccattctgtacctcacttccaatttccattcgtcattcc------ttttttttctttttttt
i macNem1.NW_012011356v1   I 320 I 2
s chlSab2.chr17             28273261 249 -  71996105 tatttgggtccttgtagaggaattgcaacctagcttaatgggtagacaagattgaaaacctaacttaggaatatgtgcctataacaatagctgagtcttgaccaatcccagtggctgtaattcaaccattcatacactgctgagtgttcaaactgtgttcaaataaggcaaaaaccgagctgtaaccaatccagccattctgtacctcacatccaatttccatccgtcattcc------ttttttttt-ttttttt
i chlSab2.chr17            I 1 I 4187
s manLeu1.NW_012104165v1     1954423 249 +   2316924 tatttgggtccttgtagaggaattgctacctaacttaatgggtagacaagattgaaaacctaacttaggaatatgtgcctataacaatagctgagtcttggccaatcccagcggctgtaattcaaccattcatacactgctgagtgttcaaactgtgttcaaataagacaaaaaccgagctgtaaccaatccagccattctgtacctcacttccaatttccattcgtcattcc------ttttttttc-ttttttt
i manLeu1.NW_012104165v1   I 1 I 3
s colAng1.NW_012115566v1     1829839 249 -   3067355 tatttggatccttgtagaggaattgcaacctagcttgatgggtagacaagattgaaaacctaacttaggaatatgtgcctataacaatagctgagtcttggccaatcccagcggctgtaattcaaccattcatacactgctgagtgttcaaactgtgttcaaataaggcaaaaaccaagctgtaaccaatccagccattctgtacctcacttccaatttccatccatcattcc------ttttttttt-ttttttt
i colAng1.NW_012115566v1   I 1 I 4
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e cerAty1.NW_012001495v1     1827233 331 -   2157725 I

a score=405837.000000
s hg38.chr6_GL000254v2_alt    123121 117 +   4827813 aagaaggagttttgctgttttgctctgttgcccaggctggagtgcagt-ggctcgatctcagctcactgaaacctctgcctcccgggttcaagcaattctcctggctcag-cctcctga
s panTro5.chr6              29103304 117 + 175400573 aagaaggagttttgctgttttgctctgttgcccaggctggagtgcagt-ggctcgatctcagctcactgaaacctctgcctcctgggttcaagcaattctcctggctcag-cctcctga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29337651 117 + 173848474 aagaaggagttttgctgttttgctctgttgcccaggctggagtgcagt-ggctcgatctcagctcactgaaacctctgcctcctgggttcaagcaattctcctggctcag-cctcctga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5137832 117 +   6154872 aagaaggagttttgctgttttgctctgttgcccaggctggagtgcagt-ggctcgatctcagctcactgaaacctctgcctcccgggttcaagcaattctcctggctcag-cctcctga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74139166 118 + 122973662 gagaaggagttttgctgttttgctctgttgcccatgctggaatgcagtgggctcgatctcagctcactgaaaactctgcctccggggttcaagtga-tctcctggatcatccctcctga
i nomLeu3.chr1a            C 0 I 315
s rheMac8.chr4              29318919 109 + 172585720 gagacgga--------gttttgctctcttgcccaggctggagtgcagt-ggctcgatctcagctcactgaaacctttgcctcccaggttcaagcaattctcctggctcag-cctcctga
i rheMac8.chr4             I 2 C 0
s macFas5.chr4              28979431 109 - 170955103 gagacgga--------gttttgctctcttgcccaggctggagtgcagt-ggctcgatctcagctcactgaaacctttgcctcccaggttcaagcaattctcctggctcag-cctcctga
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1     1949628 109 -   2996164 gagacgga--------gttttgctctcttggccaggctggagtgcagt-ggctcgatctcagttcactgaaacctttgcctcccaggttcaagcaattctcctggctcag-cctcctga
i macNem1.NW_012011356v1   I 2 C 0
s manLeu1.NW_012104165v1     1954675 109 +   2316924 gagacgga--------gttttgctctcttgcccaggctggagtgcagt-ggctcgatctcagctcactgaaacctttgcctcccaggttcaagcaattctcctggctcag-cctcctga
i manLeu1.NW_012104165v1   I 3 C 0
s colAng1.NW_012115566v1     1830092 109 -   3067355 aggatgaa--------gttttgctttcttgcccaggctggagtgcagt-ggctcgatctcagctcactgaaacctctgcctcccaggttcaagcaattatcctggctcag-cctcctga
i colAng1.NW_012115566v1   I 4 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e chlSab2.chr17             28273510 4187 -  71996105 I
e cerAty1.NW_012001495v1     1827233 331 -   2157725 I

a score=455217.000000
s hg38.chr6_GL000254v2_alt    123238 145 +   4827813 gtagctgggattacaggagcatgccaccacagccggctaa-tttttttgtatttttagtagagacggggtttcaccatgttggtcaggcttgtcttgaactcctgacctcgtgagccacacacctcggcctcccaaagtgctggga
s panTro5.chr6              29103421 145 + 175400573 gtagctgggattacaggagcatgccaccacagccggctaa-tttttttgtatttttagtagagacggggtttcaccatgttggtcaggcttgtcttgaactcctgacctcgtgagccacacgccccggcctcccaaagtgctggga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29337768 145 + 173848474 gtagctgggattacaggagcatgccaccacagccggctaa-tttttttgtatttttagtagagacagggtttcaccatgttggtcaggcttgtcttgaactcctgacctcgtgagccacacgccccggcctcccaaagtgctggga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5137949 146 +   6154872 gtagctgggattacaggagcatgccaccacagccggctaattttttttgtatttttagtagagacggggtttcaccatgttggtcaggcttgtcttgaactcctgaccttgtgagccacacgcctcggcctcccaaagtgctggga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29319028 145 + 172585720 gtagctgggattacaggagcatgccaccacagctgggtaa-tttttttgtatttttagtagagacgaggtttcaccatgttggtcgggcttgtcttgaactcctgacctcgtgatccacatgcctcggtctcccaaagtgctggga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28979540 145 - 170955103 gtagctgggattacaggagcatgccaccacagctgggtaa-tttttttgtatttttagtagagacggggtttcaccatgttggtcgggcttgtcttgaactcctgacctcgtgatccacacgcctcggtctcccaaagtgctggga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1949737 145 -   2996164 gtagctgggattacaggagcatgccaccacagctgggtaa-tttttttgtatttttagtagagacggggtttcaccatgttggtcgggcttgtcttgaactcctgacctcgtgatccacacgcctcggtctcccaaagtgctggga
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1954784 145 +   2316924 gtagctgggattacaggagcatgccaccacagctgggtaa-tttttttgtatttttagtagagacggggtttcaccatgttggtcgggcttgtcttgaactcctgacctcgtgatccacacgcctcggtctcccaaagtgctggga
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1830201 145 -   3067355 gtagctgggattacaggagcatgccactacagctgcgtaa-tttttttgtatttttagtagagatggggtttcaccgagttagtcaggatggtctcgatctcctgacctcatgatccacccgccttggcctcccaaagtgctggga
i colAng1.NW_012115566v1   C 0 I 7509
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e chlSab2.chr17             28273510 4187 -  71996105 I
e cerAty1.NW_012001495v1     1827233 331 -   2157725 I
e nomLeu3.chr1a             74139284 315 + 122973662 I

a score=65025.000000
s hg38.chr6_GL000254v2_alt    123383 37 +   4827813 ctataggcgtgggccactgcgctcggcc----ctccc------tttt
s panTro5.chr6              29103566 43 + 175400573 ttacaggcgtgggccactgcgctcggcc----CTCCCtttttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29337913 33 + 173848474 ttacaggcgtgggccactgcgctcagcc----ctccc----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5138095 33 +   6154872 ttacaggcgtgggccactgcgctcggcc----ctccc----------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29319173 37 + 172585720 ttacaggcgtgagccactgcgcctggcctcagccccc----------
i rheMac8.chr4             C 0 I 3
s macFas5.chr4              28979685 37 - 170955103 ttacaggcgtgagccactgcgcctggcctcagccccc----------
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1     1949882 37 -   2996164 ttacaggcgtgagccactgcgcctggcctcagccccc----------
i macNem1.NW_012011356v1   C 0 I 3
s manLeu1.NW_012104165v1     1954929 37 +   2316924 ttacaggcgtgagccactgcacccggcctcagccccc----------
i manLeu1.NW_012104165v1   C 0 I 3
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1830346 7509 -   3067355 I
e chlSab2.chr17             28273510 4187 -  71996105 I
e cerAty1.NW_012001495v1     1827233 331 -   2157725 I
e nomLeu3.chr1a             74139284 315 + 122973662 I

a score=176166.000000
s hg38.chr6_GL000254v2_alt    123420 63 +   4827813 ttttttttttttttttggtctataaatcttcttccaccatgtgactgcgctgagtctctgtga
s panTro5.chr6              29103609 63 + 175400573 ttttttttttttttttggtctataaatcttcttccaccatgtggctgcactgagtctctgtga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29337946 60 + 173848474 ---tttttttttttttggtctataaatcttcttccaccatgtggctgcgctgagtctctgtga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5138128 57 +   6154872 ---tttttttttttttggtctataaa---tcttccaccatgtggctgcgctgagtctctgtga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29319213 63 + 172585720 ctgcccttttttttttggtctattaatcttcttccactacgtggctgcgctgagtctctgtga
i rheMac8.chr4             I 3 C 0
s macFas5.chr4              28979725 63 - 170955103 ctgcccttttttttttggtctataaatcttcatccactacgtggctgcgctgagtctctgtga
i macFas5.chr4             I 3 C 0
s macNem1.NW_012011356v1     1949922 63 -   2996164 ctgcccttttttttttggtctataaatcttcttccactacgtggctgcgctgagtctctgtga
i macNem1.NW_012011356v1   I 3 C 0
s chlSab2.chr17             28277697 60 -  71996105 TTTTTtttttttttttggtctataaa---tcttccaccacgtggctgcgctgagtctctgtga
i chlSab2.chr17            I 4187 C 0
s manLeu1.NW_012104165v1     1954969 63 +   2316924 ctgcccttttttttttggtctataaatcttcttccaccacgtggctgcgctgagtctctgtga
i manLeu1.NW_012104165v1   I 3 I 2059
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1830346 7509 -   3067355 I
e cerAty1.NW_012001495v1     1827233 331 -   2157725 I
e nomLeu3.chr1a             74139284 315 + 122973662 I

a score=2548.000000
s hg38.chr6_GL000254v2_alt    123483 1 +   4827813 a
s panTro5.chr6              29103672 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29338006 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5138185 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29319276 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28979788 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1949985 1 -   2996164 a
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28277757 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1830346 7509 -   3067355 I
e manLeu1.NW_012104165v1     1955032 2059 +   2316924 I
e cerAty1.NW_012001495v1     1827233 331 -   2157725 I
e nomLeu3.chr1a             74139284 315 + 122973662 I

a score=319678.000000
s hg38.chr6_GL000254v2_alt    123484 105 +   4827813 tctgttgtgattctgggggctgcccgattcgcaaaccgttcattgctcaattaaactcctttaaatttaattcagctgaattttttctttcatcaATGCCCATAT
s panTro5.chr6              29103673 105 + 175400573 tctgttgtgattctgggggctgcccgattcgcaaaccgttcattgctcaattaaactcctttaaatttaattcagctgaattttttctttcatcaATGCCCATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29338007 105 + 173848474 tctgttgtgattctgggggctgcccgattcgcaaaccgttcattgctcaattaaactcctttaaatttaattcagctgaattttttctttcatcaATGCCCATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5138186 104 +   6154872 tctgttgtgattctgggggctggccgattcgcaaaccgttcattgctcaattaaactcctttaaatttaattcagctgaattttttctttcatc-aTGCCCATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29319277 105 + 172585720 tctgttgtgattctgggggttgcccaattcgcaaaccattcattgctcaattaaattcttttaaagctaattcagctgaagtttttcctttaccaATGCCCATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28979789 105 - 170955103 tctgttgtgattctgggggttgcccaattcgcaaaccattcattgctcaattaaattcttttaaagctaattcagctgaagtttttcctttaccaATGCCCATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1949986 105 -   2996164 tctgttgtgattctgggggttgcccaattcgcaaaccattcattgctcaattaaattcttttaaagctaattcagctgaagtttttcctttaccaATGCCCATAT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28277758 105 -  71996105 tctgttgtgattctgggggttgcccgattcgcaaaccgttcattgctcaattaaattcttttaaagttaattcagctgaagtttttcctttaccaATGCCCATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1957091 105 +   2316924 tctgttgtgattctgggggttgcccaattcgcaaaccattcattgctcaattaaattcttttaaagctaattcagctgaagtttttcctttaccaATGCCCATAT
i manLeu1.NW_012104165v1   I 2059 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1830346 7509 -   3067355 I
e cerAty1.NW_012001495v1     1827233 331 -   2157725 I
e nomLeu3.chr1a             74139284 315 + 122973662 I

a score=1533709.000000
s hg38.chr6_GL000254v2_alt    123589 415 +   4827813 TCTGAAGGTGTGAGTGAGC-CTATACCAACAAGGTCAGGCTCAAACCTAGCCATTTTCTTCC---AAAGTGTTAACCACAGTAT-TAAATAGCA--CCAAGG-TTTTTAAAATAACTGAGACATTTACACACAAATATATTTTTAAAAAATAGAGATggccgggcacggtggctcaggcctgtaatcccagcacttggtaggctgaggcaggcggatcacctgaggtcgggagtttgag-acaagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccatgcatggtg--gcgcatgcctgtaatcccaggtacttgggaggctgaggcaggagtattgcttgaacctgggaggcggaggttgcagtgagccgagatcgcgacattgcactccagcctgggcaacaaga
s panTro5.chr6              29103778 415 + 175400573 TCTGAAGGTGTGAGTGAGC-CTATACCAACAAGGTCAGGCTCAAACCTAGCCATTTTCTTCC---AAAGTGTTAACCACAGTAT-TAAATAGCA--CCAAGG-TTTTTAAAATAACTGAGACATTTACACACAAATATATTTTTAAAAAATAGAGATggccgggcacggtggctcaggcctgtaatcccagcacttggtaggctgaggcaggcagatcacctgaggtcgggagtttgag-acaagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccatgcatggtg--gcgcatgcctgtaatcccaggtacttgggaggctgaggcaggagtattgcttgaacctgggaggcggaggttgcagtgagccgagatcgcgaccttgcactccagcctgggcgacaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29338112 415 + 173848474 TCTGAAGGTGTGAGTGAGC-CTATACCAACAAGGTCAGGCTCAAACCTAGCCATTTTCTTCC---AAAGTGTTAACCACAGTAT-TAAATAGCA--CCAAGG-TTTTTAAAATAACTGAGACATTTACACACAAATATATTTTTAAAAAATAGAGATggccgggcacggtggctcaggcctgtaatcccagcacttggtaggctgaggcaggcagatcacctgaggtcgggagtttgag-acaagcctgagcaacatggagaaaccccgtctctactaaaaatacaaaattagccatgcatggtg--gcgcatgcctgtaatcccaggtacttgggaggctgaggcaggagtattgcttgaacctgggaggcggaggttgcagtgagccgagatcgcgaccttgcactccagcctgggcgacaaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5138290 416 +   6154872 TCTGAAGGTGTGAGTGAAC-CTATACCAACAAGGTCAGGCTCAAACCTAGCCATTTTCTTCC---AAAGTGTTAACCACAGTAT-TAAATAGCA--CCAAGGTTTTTTAAAATAACTGAGACATTTACACACAAATATATTTTTTAAAAATAGAGATggccgggcacggtggctcaggcctgtaatcccagcacttggtaggctgaggcaggcggatcacctgaggtcgggagtttgag-acaagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccatgcatggtg--gcgcatgcctgtaatcccagctacttgggaggctgaggcaggagtattgcttgaacctgggaggcggaggttgcagtgagccgagatcgcgaccttgcactccagcctgggcaacaaga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29319382 417 + 172585720 TCTGAAGGTGTGAGTGAGC-CTGTACCAATAAGGTCAGGCTCAAACCTAGCCATTTTCTTCC---AAAGTGTTAACCACAGTAT-TAAATAGCACCCCAAGG-TTTTTAAAATAACTGAGACATTTACACCCAAATCTGTGTTTAAAAAAGAGAGATggccaggggcggtggctcatgcctataatcccagcacctgggaggctgaggcaggagggtcacctgaggtcgggagttcaag-accagcctgaccaacatggagaaacgctgtttctacgaaaaatacaaaattagccaggcacggtg--gcgcatacctgtaatcccagctactcaggaggctgaggcaggagtattgcttgaacctgagaggcagaggttgccgtgagccaagatcgcacccttgcaccccagcctgggcaacaaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28979894 417 - 170955103 TCTGAAGGTGTGAGTGAGC-CTGTACCAATAAGGTCAGGCTCAAACCTAGCCATTTTCTTCC---AAAGTGTTAACCACAGTAT-TAAATAGCACCCCAAGG-TTTTTAAAATAACTGAGACATTTACACCCAAATCTGTGTTTAAAAAAGAGAGATggccaggggcggtggctcatgcctataatcccagcacctgggaggctgaggcaggagggtcacctgaggtcgggagttcaag-accagcctgaccaacatggagaaacgctgtttctacgaaaaatacaaaattagccaggcacggtg--gcgcatacctgtaatcccagctactcaggaggctgaggcaggagtattgcttgaacctgagaggcagaggttgccgtgagccaagatcgcacccttgcaccccagcctgggcaacaaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1950091 417 -   2996164 TCTGAAGTTGTGAGTGAGC-CTGTACCAATAAGGTCAGGCTCAAACCTAGCCATTTTCTTCC---AAAGTGTTAACCACAGTAT-TAAATAGCACCCCAAGG-TTTTTAAAATAACTGAGACATTTACACCCAAATCTGTGTTTAAAAAAGAGAGATggtcaggggcggtggctcatgcctataatcccagcacctgggaggctgaggcaggagggtcacttgaggtcgggagttcaag-accagcctgaccgacatggagaaacgctgtttctacgaaaaatacaaaattagccaggcacggtg--gcgcatacctgtaatcccagctactcaggaggctgaggcaggagtattgcttgaacctgagaggcagaggttgccgtgagccaagatcgcacccttgcaccccagcctgggcaacaaga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1827564 420 -   2157725 TCTGAAGGTGTGAGTGAGCGCTGTACCAATAAGGTCAGGCTC-AACCTAGCCCATTTCTTCCGCGAAGGTGTTAACCACAGTATGTAAATA-CACCCC-AGG-TTTTTAAATAAACTGAGACATTTACACCCAAATCGTTGTGTTAAAAAGAGAGATggccaggggcggtggctcatgcctataat-ccagcacctgggaggctgaggcaggagggtcacctgaggtcgggagttcaagaaccagcctgaccaacatggagaaatgctgtttctacg-aaaatacaaaattagccaggcatggtggcgcgcatacctataatcccagctactcaggaggcttgagcaggggtattgcttgaacctgagaggcagaggttgccgtgagccaagatcgcacccttgcaccccagcctgggcaacaaga
i cerAty1.NW_012001495v1   I 331 C 0
s chlSab2.chr17             28277863 417 -  71996105 TCTGAAGGTGTGAGTGAGC-CTGTACCAATAAGGTCAGGCTCAAACCTAGCCATTTTCTTCT---AAAGTGTTAACCACAGTAT-TAAATAGCACCCCAAGG-TTTTTAAAATAACTGAGACATTTACACCCAAATCTATGTTTAAAAAAGAGAGATggccaggggcggtggctcatgcctataatcccagcacctgggaggctgaggcaggagggtcatctgaggtcaggagttcaag-accagccagaccaacatggagaaaccctgtttctacgaaaaatacaaaattagccaggcatggtg--gcacatacctgtaatcccagctactcaggaggctgaggcaggagtattgcttgaacccaagaggccgaggttgccgtgagccgagatcgcacccttgtaccccagcctgggcaacaaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1957196 417 +   2316924 TCTGAAGGTGTGAGTGAGC-CTGTACCAATAAGGTCAGGCTCAAACCTAGCCATTTTCTTCC---AAAGTGTTAACCACAGTAT-TAAATAGCACCCCAAGG-TTTTTAAAATAACTGAGACATTTACACCCAAATCTGTGTTTAAAAAAGAGAGATggccaggggcagtggctcatgcctataatcccagcacctgggaggctgaggcaggagggtcacctgaggttgggagttcaag-accagcctgaccaacatggagaaacgctgtttctacgaaaaatacaaaattagccaggcatggtg--gcgcatacctgtaatcccagctactcaggaggctgaggcaggagtattgcttgaacctgagaggcagaggttgccgtgagccaagatcgcacccttgcaccccagcctgggcaacaaga
i manLeu1.NW_012104165v1   C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1830346 7509 -   3067355 I
e nomLeu3.chr1a             74139284 315 + 122973662 I

a score=505557.000000
s hg38.chr6_GL000254v2_alt    124004 130 +   4827813 gtgaaactccatctc--------aaaaaaaaaaaaaaaaaaaGAGATATAATCCAGTACCTT-ATATCTGTGCTACACCCTCATACCGTAGACTTTGTATGACTGTACGATGCTCTTCTTTGCATGACTATACAAGGCC
s panTro5.chr6              29104193 129 + 175400573 gtgaaactccatctc---------aaaaaaaaaaaaaaaaaaGAGATATAATCCAGTACCTT-ATATCTGTGCTACACCCTCATACTGTAGACTTTGTATGACTGTACGATGCTCTTCTTTGCATGACTATACAAGGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29338527 128 + 173848474 gtgaaactccatct----------acaaaaaaaaaaaaaaaaaaGATATAATCCAGTACCTT-ATATCTGTGCTACACCCTCATACTGTAGACTTTGTATGACTGTACGATGCTCTTCTTTGCATGACTATACAAGGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5138706 138 +   6154872 gtgaaactccatctcacaaaaaaaaaaaaaaaaaaaaaaaGAGAGATATAATCCAGTACCTT-ATATCTGTGCTACACCCTCATACTGTAGACTTTGTATGACTGTACGATGCTCTTCTTTGCATGACTATACAAGGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74139599 137 + 122973662 GTGAATCTCCATCTC-aaaaaaaaaaaaaaaaaaaaaaaaaaaaGATATAATCCAGTACCTT-ATATCTGTGCTACGCCCTCATACTGTAGACTTGGTATGACTGTACAATGCTCTTCTTTGCATGACTATACAAGGCC
i nomLeu3.chr1a            I 315 C 0
s rheMac8.chr4              29319799 116 + 172585720 gtgaaactccatctc---------aaaaaaaaaaagaaaGTAGAGATATAATCCAGTACCTT-ATATCTGTGCTACACCCTCATACTGTAGG-TTTGTATGACTGTACAATGCTCTTCTTTATATGA------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28980311 116 - 170955103 gtgaaactccatctc---------aaaaaaaaaaagaaaGTAGAGATATAATCCAGTACCTT-ATATCTGTGCTACACCCTCATACTGTAGG-TTTGTATGACTGTACAATGCTCTTCTTTATATGA------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1950508 116 -   2996164 gtgaaactccatctc---------aaaaaaaaaaagaaaGTAGAGATATAATCCAGTACCTT-ATATCTGTGCTACACCCTCATACTGTAGG-TTTGTATGACTGTACAATGCTCTTCTTTATATGA------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1827984 116 -   2157725 gtgaaactccatctc----------aaaaaaaaaagaaaaTAGAGATATAATCCAGTACCTTAATATCTGTGCTACACCCTCATACTGTAGG-TTTGTATGACTGTACAATGCTCTTCTTTATATGA------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28278280 117 -  71996105 gtgaaactccatctc---------aaaaaaaaaaagaaaaCAGAGATATAATCCAGTACCTT-ATATCTGTGCTACACCCTCATACTGTAGGCTTTGTATGACTGTACAATGCTCTTCTTTATATGA------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1957613 115 +   2316924 gtgaaactccatctc----------aaaaaaaaaagaaaaTAGAGATATAATCCAGTACCTT-ATATCTGTGCTACACCCTCATACTGTAGG-TTTGTATGACTGTACAATGCTCTTCTTTATATGA------------
i manLeu1.NW_012104165v1   C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1830346 7509 -   3067355 I

a score=368730.000000
s hg38.chr6_GL000254v2_alt    124134 67 +   4827813 CTTCAAAACCCGAGAAAAGTGTTCCTATTCTCATGTCAAAACTTCCTAGCACTATTAATGGAATGAA
s panTro5.chr6              29104322 67 + 175400573 CTTCAAAACCCGAGAAAAGTGTTCCTATTCTCATGTCAAAACTTCCTAGCACTATTAATGGAATGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29338655 67 + 173848474 CTTCAAAACCCGAGAAAAGTGTTCCTATTCTCATGTCAAAACTTCCTAGCACTATTAATGGAATGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5138844 67 +   6154872 CTTCAAAACCCGAGAAAAGTGTTCCTATTCTCATGTCAAAACTTCCTAGCACTATTAACGGAATGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74139736 67 + 122973662 CTTCAAAAACCGAGAAAAGTGTTCCTATTCTTATGTCAAAACTTCCTAGCACTATTAATGGAATGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29319915 67 + 172585720 CTTCAAAACCTGAGAAAAGTGTTCCTATTCTTATGTCAAAACGTCCTAGCACTACTTATGGAATGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28980427 67 - 170955103 CTTCAAAACCTGAGAAAAGTGTTCCTATTCTTATGTCAAAACGTCCTAGCACTACTTATGGAATGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1950624 67 -   2996164 CTTCAAAACCTGAGAAAAGTATTCCTATTCTTATGTCAAAACGTCCTAGCACTACTTATGGAATGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1828100 66 -   2157725 CTTC-AAACCTGAGAAAAGTGTTCCTATTCTTATGTCAAAACGTCCTACAACTACTTATGGAATGAA
i cerAty1.NW_012001495v1   C 0 I 1422
s chlSab2.chr17             28278397 67 -  71996105 CTTCAAAACCCGAGAAAAGTGTTCCTATTCTTATGTCAAAACGTCCTAGCACTACTTATGGAATGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1957728 67 +   2316924 CTTCAAAACCTGAGAAAAGTGTTCCTATTCTTATGTCAAAACGTCCTACCACTACTTATGGAATGAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1837855 67 -   3067355 CTTCAAAACCCAAGAAAAGTGTTCCTATTCTTATGTCAAAACGTCCTAGCACTACTTACGGAATGAA
i colAng1.NW_012115566v1   I 7509 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I

a score=43840.000000
s hg38.chr6_GL000254v2_alt    124201 10 +   4827813 CTGTT-GGGGG
s panTro5.chr6              29104389 10 + 175400573 CTGTT-GGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29338722 10 + 173848474 CTGTT-GGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5138911 10 +   6154872 CTGTT-GGGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74139803 11 + 122973662 CTATTAGGGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29319982 10 + 172585720 CTGTT-AGGGG
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              28980494 10 - 170955103 CTGTT-AGGGG
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     1950691 10 -   2996164 CTGTT-AGGGG
i macNem1.NW_012011356v1   C 0 I 1
s chlSab2.chr17             28278464 10 -  71996105 CTGTT-AGGGG
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012104165v1     1957795 10 +   2316924 CTGTT-AGGGG
i manLeu1.NW_012104165v1   C 0 I 1
s colAng1.NW_012115566v1     1837922 10 -   3067355 CTGTT-AGGGG
i colAng1.NW_012115566v1   C 0 I 1
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e cerAty1.NW_012001495v1     1828166 1422 -   2157725 I

a score=2031909.000000
s hg38.chr6_GL000254v2_alt    124211 357 +   4827813 AAAATGAAATAAAAAAGCAATGTTATTTCCCCTAAATCTTTAGCAAGCACTTGTTGGATTAGTGAATCTTTGCCCTTGCGTGCAAGTCAGAGGATGGCAGCTCAAACTCACTAGAATCCATCTGGTTGTCTCCTCTTTTCTTTTGTCTCACATGCTTTGTTATGTGTCAGTTTAACTATACATATTTTAAAATAAGGACTTTCAGGGCAAAACATCTTAC---CATATACTATCACCGTAACTTGATGTAAACTTGAACTTAGTATACAGTAAGGCTGAGCTTATAAAATGTTCATTCAGGCTTACGTCAAGTTATGGTGGTAGAATATGGTAAATGAACTT---ATGTGATCTTATAAACTT
s panTro5.chr6              29104399 357 + 175400573 AAAATGAAATAAAAAAGCAATGTTATTTCCCCTAAATCTTTAGCAAGCACTTGTTGGATTAGTAAATCTTTGCCCTTGCGTGCAAGTCAGAGGATGGCAGCTCAAACTCACTAGAATCCATCTGGTTGTCTCCTCTTTTCTTTTGTCTCACATGCTTTGTTATGTGTCAGTTTAACTATACATATTTTAAAATAAGGACTTTCAGGGCAAAACGTCTTAC---CATATACTATCACCGTAACTTGATGTAAACTTGAACTTAGTATACAGTAAGGCTGAGCTTATAAAATGTTCATTCAGGCTTACGTCAAGTTATGGTGGTAGAATATGGTAAATGAACTT---ATGTGATCTTATAAACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29338732 357 + 173848474 AAAATGAAATAAAAAAGCAATGTTATTTCCCCTAAATCTTTAGCAAGCACTTGTTGGATTAGTAAATCTTTGCCCTTGCGTGCAAGTCAGAGGATGGCAGCTCAAACTCACTAGAATCCATCTGGTTGTCTCCTCTTTTCTTTTGTCTCACATGCTTTGTTATGTGTCAGTTTAACTATACATATTTTAAAATAAGGACTTTCAGGGCAAAACGTCTTAC---CATATACTATCACCGTAACTTGATGTAAACTTGAACTTAGTATACAGTAAGGCTGAGCTTATAAAATGTTCATTCAGGCTTACGTCAAGTTATGGTGGTAGAATATGGTAAATGAACTT---ATGTGATCTTATAAACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5138921 357 +   6154872 AAAATGAAATAAAAAAGCAATGTTATTTCCCCTAAATCTTTAGCAAGCACTTGTTGGATTAGTAAATCTTTGCCCTTGCGTGCAAGTCAGAGGATGGCAGCTCAAACTCACTAGAATCCATCTGGTTGTCTCCTCTTTTCTTTTGTCTCACATGCTTTGTTATGTGTCAGTTTAACTATACATATTTTAAAATAAGGACTTTCAGGGCAAAACGTCTTAC---CATATACTATCACCGTAACTTGATGTAAGCTTGAACTTAGTATACAGTAAGGCTGAGCTTATAAAATGTTCATTCAGGCTTACATCAAGTTATGGTGGTAGAATATGGTAAATGAACTT---ATGTGATCTTATAAACTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74139814 346 + 122973662 GAAATGAAATAAAAAAGCAATGTTATTTCTCCTAAATCTGTAGCAAGCACTTGTTGGATTAGTAAATCTTTGGCCTTGCATGCAAGTCAGAGGATGGCAGCTGAAACTCACTAGAATCCATCTGGTTGTCTC--CTTTCCTTTTGTCTCACATGCTT-------TGTCAGTTTAACTATACATATTTTAAAATAAGGACTTTCAGGGCAAAACGTCTGAC---CGTATACTATCACCGTAACTTGATGTAAGCCTGAACTTAGTATATGGTAAGGCTGCACTT-----ATGTTCATTCAGGCTTACATCAAGTTATGGTGGTAGAATATGGTAAATGAACTTATAATGTGATCTTAAAAACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29319993 363 + 172585720 AAAATGAAATAAAAAAGCAATGTCATTTCCCCTAAATCTTTAGTAAGCACTTGTTGGATTAGTAAATCTTAGGCTTTGTGTGCAAGTCAGAGGATGGCAGCTCAAACTCACTAGAATCCATCTGGTTGTCTCCTCTTTCCTTTTGTCTCACATGCTTTGTTATGTATCAGTTTAACTATACATATTTTAAAATAAGGACTTTCAGGGCAAAACGTCTCACAAACATATACTATCACCATAACTTGATGGAAGCCTGAATTTAGTATATGGTAAGGCTGAACTTATAAAATGTTCATTCAGGCTTCCATCAAGTTATGGTGGTAGAATATGGTAAAAGAACTTATAATGTGATCTTataaactt
i rheMac8.chr4             I 1 I 1662
s macFas5.chr4              28980505 363 - 170955103 AAAATGAAATAAAAAAGCAATGTCATTTCCCCTAAATCTTTAGTAAGCACTTGTTGGATTAGTAAATCTTAGGCTTTGTGTGCAAGTCAGAGGATGGCAGCTCAAACTCACTAGAATCCATCTGGTTGTCTCCTCTTTCCTTTTGTCTCACATGCTTTGTTATGTATCAGTTTAACTATACATATTTTAAAATAAGGACTTTCAGGGCAAAACGTCTCACAAACATATACTATCACCATAACTTGATGGAAGCCTGAATTTAGTATATGGTAAGGCTGAACTTATAAAATGTTCATTCAGGCTTCCATCAAGTTATGGTGGTAGAATATGGTAAAAGAACTTATAATGTGATCTTataaactt
i macFas5.chr4             I 1 I 1654
s macNem1.NW_012011356v1     1950702 363 -   2996164 AAAATGAAATAAAAAAGCAATGTCATTTCCCCTAAATCTTTAGTAAGCACTTGTTGGATTAGTAAATCTTAGGCTTTGCGTGCAAGTCAGAGGATGGCAGCTCAAACTCACTAGAATCCATCTGGTTGTCTCCTCTTTCCTTTTGTCTCACATGCTTTGTTATGTATCAGTTTAACTATACATATTTTAAAATAAGGACTTTCAGGGCAAAACGTCTCACAAACATATACTATCACCATAACTTGATGGAAGCCTGAATTTAGTATATGGTAAGGCTGAACTTATAAAATGTTCATTCAGGCTTCCATCAAGTTATGGTGGTAGAATATGGTAAAAGAACTTATAATGTGATCTTataaactt
i macNem1.NW_012011356v1   I 1 I 2418
s cerAty1.NW_012001495v1     1829588 363 -   2157725 aaaATGAAATAAAAAAGCAATGTCATTTCCCCTAAATCTTTAGTAAGCACTTGTTGGATTAGTAAATCTTAGGCCTTGCGTGCAAGTCAGAGGATGGCAGCTCAAACTCACTAGAATCCATCTGGTTGTCTCCTCTTTCCTTTTGTCTCACATGCTTTGTTATGTATCAGTTTAACTATACATATTTTAAAATAAGGACTTTCAGGGCAAAACGTCTCACAAACATATACTATCACCATAACTTGATGGAAGCCTGAATTTAGTATATGGTAAGGCTGAACTTATAAAATGTTCATTCAGGCTTCCATCAAGTTATGGTGGTAGAATATGGTAAATGAACTTATAATGTGATCTTataaactt
i cerAty1.NW_012001495v1   I 1422 I 1325
s chlSab2.chr17             28278475 363 -  71996105 AAAATGAAATAAAAAAGCAATGTCATTTCCCCTAAATCTTTAGTAAGCACTTGTTGGATTAGTAAATCTTAGGCCTTGCGTGCAAGTCAGAGGATGGCAGCTCAAACTCACTAGAATCCATCTGGTTGTCTCCTCTTTCCTTTTGTCTCACATGCTTTGTTATGTATCAGTTTAACTATACATATTTTAAAATAAGGACTTTCAGGGCAAAACATCTTACAAACATATACTATCACCATAACTTGATGTAAGCCTGAATTTAGTATATGGTAAGGCTGAACTTATAAAATGTTCATTCAGGCTTCCATCAAGTTATGGTGGTAGAATACGGTAAATGAACTTATAATGTGATCGTataaactt
i chlSab2.chr17            I 1 I 1324
s manLeu1.NW_012104165v1     1957806 363 +   2316924 AAAATGAAATAAAAAAGCAATGTCATTTCCCCTAAATCTTTAGTAAGCACTTGTTGGATTAGTAAATCTTAGGCCTTGCGTGCAAGTCAGAGGATGGCAGCTCAAACTCACTAGAATCAATCTGGTTGTCTCCTCTTTCCTTTTGTCTCACATGCTTTGTTATGTATCAGTTTAACTATACATATTTTAAAATAAGGACTTTCAGGGCAAAACGTCTCACAAACATATACTATCACCATAACTTGATGGAAGCCTGAATTTAGTATATGGTAAGGCTGAACTTATAAAATGTTCATTCAGGCTTCCATCAAGTTATGGTGGTAGAATATGGTAAATGAACTTATAATGTGATCTTataaactt
i manLeu1.NW_012104165v1   I 1 I 1329
s colAng1.NW_012115566v1     1837933 363 -   3067355 AAAATGAAATAAAAAAGCAATGTCATTTCCCCTAAATCTTTAGTAAGCACTTGTTGGATTAGTAAATCTGAGGCCTTGCGTGCAAGTCAGAGGATGGCAGCTCAAACTCACTAGAATCCATCTGGTTGTCTCTTCTTTCCTTTTGTCTCACATGCTTTGTTATGTATCAGTTTAACTACACATATTTTAAAATAAGGACTTTCAGGGCAAAACGTCTTACAAACATATACTATCACCATAACTTCATGTAAGCCTGAATTTAGTATATGGTAAGTCTGAACTTATAAAACGTTCATTCAGGCTTCCATCAAGTTACGGTGGTAGAATATGGTAAATGAACTTATAATGTGATCTTataaactt
i colAng1.NW_012115566v1   I 1 I 1333
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I

a score=27810.000000
s hg38.chr6_GL000254v2_alt    124568 33 +   4827813 AAAAACTGCTTATAAACTGCTCTAAAACTTTTT
s panTro5.chr6              29104756 33 + 175400573 AAAAACTGCTTATAAACTGCTCTAAAACTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29339089 33 + 173848474 AAAAACTGCTTATAAACTGCTCTAAAACTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5139278 32 +   6154872 AAAAACTGCTTATAAACTGCTCTAAAACTTTT-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74140160 33 + 122973662 TAAAACTGCTTATAAACTGCTCTAAAACTTTTT
i nomLeu3.chr1a            C 0 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e calJac3.chr4             171353656 14847 - 171630274 I
e colAng1.NW_012115566v1     1838296 1333 -   3067355 I
e manLeu1.NW_012104165v1     1958169 1329 +   2316924 I
e chlSab2.chr17             28278838 1324 -  71996105 I
e cerAty1.NW_012001495v1     1829951 1325 -   2157725 I
e macNem1.NW_012011356v1     1951065 2418 -   2996164 I
e macFas5.chr4              28980868 1654 - 170955103 I
e rheMac8.chr4              29320356 1662 + 172585720 I

a score=6215.000000
s hg38.chr6_GL000254v2_alt    124601 10 +   4827813 TTAAAAATTA
s panTro5.chr6              29104789 10 + 175400573 TAAAAAATTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29339122  9 + 173848474 T-AAAAATTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5139310  8 +   6154872 --AAAAATTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74140193  9 + 122973662 T-AAAAATTA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28982522  8 - 170955103 TTAAAAAT--
i macFas5.chr4             I 1654 C 0
s calJac3.chr4             171368503  8 - 171630274 TTAAAAAT--
i calJac3.chr4             I 14847 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e saiBol1.JH378348            184334 11530 -    375362 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e aotNan1.NW_018494050v1      123613 12673 -    285216 I
e cebCap1.NW_016108108v1      175345 20111 -    373274 I
e colAng1.NW_012115566v1     1838296 1333 -   3067355 I
e manLeu1.NW_012104165v1     1958169 1329 +   2316924 I
e chlSab2.chr17             28278838 1324 -  71996105 I
e cerAty1.NW_012001495v1     1829951 1325 -   2157725 I
e macNem1.NW_012011356v1     1951065 2418 -   2996164 I
e rheMac8.chr4              29320356 1662 + 172585720 I

a score=93499.000000
s hg38.chr6_GL000254v2_alt    124611 10 +   4827813 AAAATAAAAC
s panTro5.chr6              29104799 10 + 175400573 AAAATAAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29339131 10 + 173848474 AAAATAAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5139318 10 +   6154872 AAAATAAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74140202 10 + 122973662 AAAATAAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29322018 10 + 172585720 AAAATAAAAC
i rheMac8.chr4             I 1662 C 0
s macFas5.chr4              28982530 10 - 170955103 AAAATAAAAC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1831276 10 -   2157725 AAAATAAAAC
i cerAty1.NW_012001495v1   I 1325 C 0
s chlSab2.chr17             28280162 10 -  71996105 AAAATAAAAC
i chlSab2.chr17            I 1324 C 0
s manLeu1.NW_012104165v1     1959498 10 +   2316924 AAAATAAAAC
i manLeu1.NW_012104165v1   I 1329 C 0
s colAng1.NW_012115566v1     1839629 10 -   3067355 AAAATAAATC
i colAng1.NW_012115566v1   I 1333 C 0
s calJac3.chr4             171368511 10 - 171630274 AAAATAAAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            195864 10 -    375362 aaaataaaaC
i saiBol1.JH378348         I 11530 C 0
s cebCap1.NW_016108108v1      195456 10 -    373274 aaaataaaAC
i cebCap1.NW_016108108v1   I 20111 C 0
s aotNan1.NW_018494050v1      136286 10 -    285216 AAAATAAAAC
i aotNan1.NW_018494050v1   I 12673 C 0
e canFam3.chr35             25859896 7017 +  26524999 I
e otoGar3.GL873742           1494709 15037 -   2232465 I
e macNem1.NW_012011356v1     1951065 2418 -   2996164 I

a score=954412.000000
s hg38.chr6_GL000254v2_alt    124621  95 +   4827813 AAATTCAAGGTATGCTCTTCTACTGGATATGCCA------T--CTTAATTTTCTGTAACGGAAA----CTATCCTTTTGCCAACATCTACTCAGATGACTGGACTAA
s panTro5.chr6              29104809  95 + 175400573 AAATTCAAGGTATGCTCTTCTACTGGATATGCCA------T--CTTAATTTTCTGTAACGGAAA----CTATCCTTTTGCCAACATCTACTCAGATGACTGGACTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29339141  95 + 173848474 AAATTCAAGGTATGCTCTTCTACTGGATATGCCA------T--CTTAATTTTCTGTAACGGAAA----CTATCCTTTTGCCAACATCTACTCAGATGACTGGACTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5139328 100 +   6154872 AAATTCAAGGTATGCTCTTCTACTGGATATGCCATAA-CTT--CTTAATTTTCTGTAACGGAAA----CTATCCTGTTGCCAACATCTACTCAGATGACTGGACTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74140212  97 + 122973662 AAATTCAAGATATGCTTTTCTACTGGATATGCCA------TAACTTAATTTTCTGTAATGAAAA----CTATCCTTTTGCCAACATCTACTCAGATGACTGGACTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29322028 100 + 172585720 AAATTCAAGCTATACTTTTCTACTGGATATGCCATAA-CTT--CTTAATTTTCTGTAATGGAAA----CTATCCTTTTGCCAACATCTACTCAGATGACTGGACTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28982540 100 - 170955103 AAATTCAAGCTATACTTTTCTACTGGATATGCCATAA-CTT--CTTAATTTTCTGTAATGGAAA----CTATCCTTTTGCCAACATCTACTCAGATGACTGGACTAA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1831286 100 -   2157725 AAATTCAAGCTATACTTTTCTACTGGATATGCCATAA-CTT--CTTAATTTTCTGTAATGGAAA----CTATCCTTTTGCCAACATCTACTCAGATGACTGGACTAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28280172 100 -  71996105 AAATTCAAGCTATACTTTTCTACTGGATATGCCATAA-CTT--CTTAATTTTCTGTAATGGAAA----CTATCCTTTTGCCAACATCTACTCAGATGACTGGACTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1959508 100 +   2316924 AAATTCAAGCTATACTTTTCTACTGGATATGCCATAA-CTT--CTTAATTTTCTGTAATGGAAA----CTATCCTTTTGCCAACATCTACTCAGATGACTGGACTAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1839639 100 -   3067355 AAATTCAAGCTACACTTTTCTACTGGATATGCTATAA-CTT--CTTAATTTTCTGTAATGGAAA----TTATCCTTTTGCCAACATCTACTCAGATGACTGGACTAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171368521 100 - 171630274 AAGTTCACGGTATACTTTTGTACTGGAGACGCCATAA-CTT--CTCAATTTTCTGTAGTGGGAA----CAATCCCTTTGCCAACATCTCCCCGGATGACTGGACTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            195874 100 -    375362 AAATTCAAGGTATACTTTTGTACTGGAGATACCATAA-CTT--CTTAATTTTCTGTAATGGCAA----CAATCCCTTTGCTAACACCTACCCAGACGACTGGACTAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      195466 100 -    373274 AAATTCACGGTATACTTTTGTACTGGAGATGCCATAA-CTT--CTTAATTTTCTGTAATGGCAA----CAATCCCTTTGCCAACATCTACCCAGATGACTGGACTAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      136296 100 -    285216 AAATTCAAGGAATACTTTTGTACTGGAGATGCCATAA-CTT--CTTAATTTTCTGTAATGGCAA----CAATCCCTTTGCCAACATCTACCCAGATGACTGGACTAA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1509746 100 -   2232465 AAATTCAAGGTATG-TTTTGTACTGGATACTCTATAATTTT--TTTAATACTTTGTAATGGGAA----GTACCCCTTTGCCAACGTCTACTCAACAGATTAGACTAA
i otoGar3.GL873742         I 15037 C 0
s canFam3.chr35             25866913 104 +  26524999 AAATTCAAGGTATACTTTTGTGTTGGAGGTGCTGTAA-CTT--CTTTACATTCAGTAAAGGAAGCTACCTATCCCTTTGCCAACATCTACTGAGATGACAGGACCCA
i canFam3.chr35            I 7017 C 0
e macNem1.NW_012011356v1     1951065 2418 -   2996164 I

a score=1028288.000000
s hg38.chr6_GL000254v2_alt    124716 120 +   4827813 TAcagtcatgcctagatcaacctcagggatatgatctgaaaaattagtcattagggcatttcatcact--gtgcaaacattttagagagtatttaacacaaacctagatggtatagcctact
s panTro5.chr6              29104904 120 + 175400573 TAcagtcatgcctagatcaacctcagggatatgatctgaaaaattagtcattagggcatttcatcact--gtgcaaacattttagagagtatttaacacaaacctagatggtatagcctact
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29339236 120 + 173848474 TAcagtcatgcctagatcaacctcagggatatgatctgaaaaattagtcattagggcatttcatcact--gtgcaaacattttagagagtatttaacacaaacctagatggtatagcctact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5139428 120 +   6154872 TAcagtcatgcctagatcaacctcagggatatgatctgaaaaattagtcattagggcatttcatcact--gtgcaaacactttagagagtatttaacacaaacctagatggtatagcctact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74140309 118 + 122973662 TAcagtcatgcctagaccaacctcagggatatgatctgaaaaattagtcattaggccatttcatcact--gtgcgaacatttt--agagtatttaacacaaacctagatggtatagcttact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29322128 119 + 172585720 TAcagtcatgcctagatcaaccccaggaatatgatctgaaaaattagtca-caggccatttcatcact--gtgcgaacattttagagagtatttaacacaaacctagatggtatagcctact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28982640 119 - 170955103 TAcagtcatgcctagatcaaccccagggatatgatctgaaaaattagtca-caggccatttcatcact--gtgcgaacattttagagagtatttaacacaaacctagatggtatagcctact
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1831386 119 -   2157725 TAcagtcatgcctagatcaaccccagggatatgatctgaaaaattagcca-taggccatttcatcact--gtgcaaacattttagagagtatttaacacaaacctagatggtatagcctact
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28280272 119 -  71996105 TAcagtcatgcctagatcaaccccagggatatgatctgagaaattagtca-taggccatttcatcact--gtgcgaacattttagaaagtatttaatacaaacctagatggtatagcctacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1959608 115 +   2316924 TAcagtcatgcctagatcaaccccagggatatgatctgaaaaattagcca-taggccatttcatcact--gtacgaacattttaga----atttaacacaaacctagatggtatagcctact
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1839739 119 -   3067355 TAcagtcatgcctagatcaacctcagggatatgatctgagaaattagtcg-taggctatttcatcact--gtgcgaacattttagagagtatttaacacaaacctagatggtatagcctact
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171368621 122 - 171630274 CAGAGTTACGCCTAGATCGACCTcaggggtctgatctgcggaatcagtcattaggccatttcatcaccaagaatgaacatcttagagagtattgaacacaaacctagatggtggagcctact
i calJac3.chr4             C 0 M 578
s saiBol1.JH378348            195974 120 -    375362 CAGagttatccctagatcaacctcagggatctgatatgagaaatcagtcgttaggccatttcatcact--gtgtgaacatcttagaaactatttaacacaaacctagatggtagagcctacc
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      195566 120 -    373274 CAcagttatccctagatcaacctcagggatctgatctgagaaatcagtcatgaggccatttcatcact--gggtgaacatcttagagagtatttaacacaaacctagatggtagagcctacc
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      136396 118 -    285216 CAcagttatgcctagatcaacctcagagatctgatctgagaaatcaggcattaggccatttcatcact--gtgtgaacatcttatag--tatttaacacaaacctagatggtagagcctact
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1509846 119 -   2232465 TTcagtcgtgcatcacttaagcacagggatatgttctaagaaatgcataattaggcaatttagtcctg--gtgtgaacaaaatagagtatactt-acacaaacctagatggcagaactaact
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25867017   0 +  26524999 C
e macNem1.NW_012011356v1     1951065 2418 -   2996164 I

a score=552493.000000
s hg38.chr6_GL000254v2_alt    124836 80 +   4827813 -ccacacctaggttatacggtgtagtccattgctgctgggctacaaaccactacagcatgttactgtattgaatactgtag
s panTro5.chr6              29105024 80 + 175400573 -ccacacctaggttatacggtgtagcccattgctgctgggctacaaaccactacagtatgttactgtattgaatactgtag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29339356 80 + 173848474 -ccacacctaggttatacggtgtagcccattgctgctgggctacaaaccactacagcatgttactgtattgaatactgtag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5139548 80 +   6154872 -ccacacctaggttatacggtgtagcccattgctgctgggttacaaaccactacagcatgttactgtattgaatactgtag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74140427 80 + 122973662 -ccacacctaggttatatggtgtagcccattgcttctaggctaaaaaccactacagcatgttgctctattgaatactgtag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29322247 80 + 172585720 -ccacacctaggttatatggtgtagcccattgcttctaggctacaaaccactacaacacgttactgtattgagtactgtag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28982759 80 - 170955103 -ccacacctaggttatatggtgtagcccattgcttctaggctacaaaccactacaacacgttactgtattgaatactgtag
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1831505 80 -   2157725 -ccacacctaggttatatggtgtagcccattgcttctaggctacaaatcactacaacacgttactgtattgaatactgtag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28280391 80 -  71996105 -ccacacctaggttatatggtgtagcccactgcttctaggctacaaaccactacaacacgttactgtattgaatactgtag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1959723 80 +   2316924 -ccacacctaggttatatggtgcagcccattgcttctaggctacaaatcactacaacacgttactgtattgaatactgtag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1839858 80 -   3067355 -ctacacctaggttatatggtgtagcccattgtttctaggctacaaaccactacaacatgttactgtattgaatactgtgg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            196094 60 -    375362 -ccatacct-------------------attgctcctaggctgcaaaccaccacagcatgttactgta-tgaatactgtag
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      195686 60 -    373274 -ccacacct-------------------attgctcctaggctgcaaatcaccacagcatattacttta-tgaatactgtag
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      136514 60 -    285216 -ccacacct-------------------attgctcctaggctgcaaaccaccacagcatgttacctta-tgaaaactgtag
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1509965 81 -   2232465 tacacaattaggctataaagcatagcctattgctcctaggttataaacctgcaaagcatgttactatactgagtactgtag
i otoGar3.GL873742         C 0 I 1229
e canFam3.chr35             25867017  0 +  26524999 C
e calJac3.chr4             171368743 578 - 171630274 M
e macNem1.NW_012011356v1     1951065 2418 -   2996164 I

a score=9100.000000
s hg38.chr6_GL000254v2_alt    124916 1 +   4827813 g
s panTro5.chr6              29105104 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29339436 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5139628 1 +   6154872 g
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74140507 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29322327 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28982839 1 - 170955103 g
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1831585 1 -   2157725 g
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28280471 1 -  71996105 g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1959803 1 +   2316924 g
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1839938 1 -   3067355 g
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            196154 1 -    375362 g
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      195746 1 -    373274 g
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      136574 1 -    285216 g
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25867017 0 +  26524999 C
e otoGar3.GL873742           1510046 1229 -   2232465 I
e calJac3.chr4             171368743 578 - 171630274 M
e macNem1.NW_012011356v1     1951065 2418 -   2996164 I

a score=857496.000000
s hg38.chr6_GL000254v2_alt    124917 114 +   4827813 gcaatggaacacacagatacgtatttgtgtacttaaacacaggaaagatacagtaaaaatatggtattatagtctt-ataaaaccatggtcgtacatgtagtcagtcattgacgg
s panTro5.chr6              29105105 114 + 175400573 gcaatggaacacacagatacgtatttgtgtacttaaacacaggaaagatacagtaaaaatatggtattatagtctt-acaaaaccatggtcgtacatgtagtcagtcattgacgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29339437 114 + 173848474 gcaatggaacacacagatacgtatttgtgtacttaaacacaggaaagatacagtaaaaatatggtattatagtctt-acaaaaccatggtcgtacatgtagtcagtcattgacgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5139629 114 +   6154872 gcaatggaacacacagatacgtatttgtgtacttaaacacaggaaagatacagtaaaaatatggtattatagtctt-acaaaaccatggtcgtacatgtagtcagtcattgacgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74140508 114 + 122973662 gtagtggaacacacagataagtatttgtgtccttaaacacagaaaaggtacagtaaaaatatggtattatagtctt-acaaaaccatggttgtatatgtagtcagtcattgacgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29322328 115 + 172585720 gcagtggaacacacagataagtatttgtgtacttaaacacagaaaaggtacagtaaaaaaatggtataatagtcttaacaaaaccacggtcgtatatgtggtcagtcgttgacgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28982840 115 - 170955103 gcagtggaacacacagataagtatttgtgtacttaaacacagaaaaggtacagtaaaaaaatggtataatagtcttaacaaaaccacggtcgtatatgtggtcagtcgttgacgg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1831586 115 -   2157725 gcagtggaacacacagataagtatttgtgtacttaaacacagaagaggtacagtaaaaatacggtataatagtcttaacaaaaccacggtcgtatatgtggtcagtcgttgacgg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28280472 115 -  71996105 gcagtggaacacacagataagtatttgtgtacttaaacacagaaaaggtacagtaaaaatacggtataatagtcttaacaaaaccacggtcgtatatgtggtcagtcgttgacgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1959804 115 +   2316924 gcagtggaacacacagataagtatttgtgtacttaaacacagaagaggtacagtaaaaatacggtataatagtcttaacaaaaccacggtcgtatatgtggtcagtcgttgacgg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1839939 114 -   3067355 gcagtggaacacacagataagtatttgtgtacttaaacacagaaaaggtacagtaaaaatacggtataatagtctt-acaaaaccacggtcgtatatgtggtcagtcgttgacgg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            196155 114 -    375362 acagtggaacagacaggtaagtatttgtgtatttaaacacagaaaacgtacagtaaaactacggtattacagtctt-acaaaaccacagtcgtgtatgtggtcagctgttgatgg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      195747 114 -    373274 acagtggaacacacagataagtatttgtgtatttaaacacagaaaaggaacagtaaaactacagtattacagtctt-acaaaaccacagtcatatatgtggttagctgttgatgg
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      136575 114 -    285216 gcagtggaacacacagataagtacttgtgtatttaaacacagaaaagttacagtaacactacaatattacagtctt-acaaaaccacggtcatatatgtggtcagctgttgacgg
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1511275 108 -   2232465 GCATTAATGTACACAGCTATG-ATTTA---ATTAaaaaaaagaaaaaatatgatataa-tatgatat-ataatctt-atggaaccactttcacatatgtagtccattgttgacca
i otoGar3.GL873742         I 1229 C 0
e canFam3.chr35             25867017   0 +  26524999 C
e calJac3.chr4             171368743 578 - 171630274 M
e macNem1.NW_012011356v1     1951065 2418 -   2996164 I

a score=231276.000000
s hg38.chr6_GL000254v2_alt    125031 26 +   4827813 -aaaggtctttgtgtg-aagca-caaatg
s panTro5.chr6              29105219 26 + 175400573 -aaaggtctttgtgtg-aagca-caaatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29339551 26 + 173848474 -aaaggtctttgtgtg-aagca-caaatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5139743 26 +   6154872 -aaaggtctttgtgtg-aagca-caaatg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74140622 26 + 122973662 -aaaggtctttgtgtg-aagca-caaatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29322443 26 + 172585720 -aaaggtctttgtgtg-aagca-caactg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28982955 26 - 170955103 -aaaggtctttgtgtg-aagca-caactg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1831701 26 -   2157725 -aaaggtctttgtgtg-aagca-caactg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28280587 26 -  71996105 -aaaggtctttgtgtg-aagca-caactg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1959919 26 +   2316924 -aaaggtctttgtgtg-aagca-caactg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1840053 26 -   3067355 -aaaggtccttgtgtg-aagca-caactg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171369322 28 - 171630274 -AAAGGCCTTTGTGTGAAAGCACCAACTG
i calJac3.chr4             M 578 C 0
s saiBol1.JH378348            196269 27 -    375362 -aaaggcctttgtgtgaaagcg-caactg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      195861 26 -    373274 -aaaggccttcgtgtg-aagca-caactg
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      136689 26 -    285216 -aaaggcctttgtgtg-aagca-caactg
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1511383 27 -   2232465 aaatgtcctgtatgtg-gccca-taactg
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25867017  0 +  26524999 C
e macNem1.NW_012011356v1     1951065 2418 -   2996164 I

a score=303829.000000
s hg38.chr6_GL000254v2_alt    125057 37 +   4827813 TA-GTTCCAATTTGAGCATGAC--ATCTTGTTGAAGGTTT
s panTro5.chr6              29105245 37 + 175400573 TA-GTTCCAATTTGAGCATGAC--ATCTTGTTGAACGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29339577 37 + 173848474 TA-GTTCCAATCTGAGCATGAC--ATCTTGTTGAACGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5139769 37 +   6154872 TA-GTTCCAATTTGAGCATGAC--ATCTTGTTGAAGGTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74140648 37 + 122973662 TA-GTTCCAGTTTGAGCATGAC--ACCTTGTTGAAGGTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29322469 37 + 172585720 TA-GTTCCAGTTTGAGCGTGAC--ACCTTGTTGAAGTTTT
i rheMac8.chr4             C 0 I 313
s macFas5.chr4              28982981 37 - 170955103 TA-GTTCCAGTTTGAGCGTGAC--ACCTTGTTGAAGTTTT
i macFas5.chr4             C 0 I 410
s cerAty1.NW_012001495v1     1831727 37 -   2157725 TA-GTTCCAGTTTGAGCGTGAC--ACCTTGTTGAAGTTTT
i cerAty1.NW_012001495v1   C 0 I 308
s chlSab2.chr17             28280613 37 -  71996105 TA-GTTGCAGTTTGAGCGTGAC--GCCTTGTTGAAGTTTT
i chlSab2.chr17            C 0 I 1863
s manLeu1.NW_012104165v1     1959945 37 +   2316924 TA-GTTCCAGTTTGAGCGTGAC--ACCTTGTTGAAGTTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1840079 37 -   3067355 TA-GTTCCAGTTTGAGCGTGAC--ACCGTGTTGAAATTTT
i colAng1.NW_012115566v1   C 0 I 305
s calJac3.chr4             171369350 39 - 171630274 TAGGTTCCAATTTGAGCATGCTGAATGTGGGTGAAGATT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            196296 39 -    375362 TA-GTTCCAATTTGAGCATGATGAATCTTGGTGAAGATTT
i saiBol1.JH378348         C 0 I 307
s cebCap1.NW_016108108v1      195887 39 -    373274 TA-GTTCCAATTTGAGCATTATGAATCTTGGTGAAGATTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      136715 39 -    285216 TA-GTTGCAATTTGAGCATGATGAATCTTGGTGAAGATTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1511410 37 -   2232465 TA-CTTCTAATTTGATCATGAC--ACCTTGCTAAAGGTTT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25867017 37 +  26524999 TA-GTTCTAACGTGAGTGGGAT--AACCTGCTAAAAGTTT
i canFam3.chr35            C 0 C 0
e macNem1.NW_012011356v1     1951065 2418 -   2996164 I

a score=129968.000000
s hg38.chr6_GL000254v2_alt    125094 13 +   4827813 AAGAATTAACCTG
s panTro5.chr6              29105282 13 + 175400573 AAGAATTAACCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29339614 13 + 173848474 AAGAATTAACCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5139806 13 +   6154872 AAGAATTAACCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74140685 13 + 122973662 AAGGATTAACCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29322819 13 + 172585720 aaGAGTTAACCTG
i rheMac8.chr4             I 313 C 0
s macFas5.chr4              28983428 13 - 170955103 aaGAGTTAACCTG
i macFas5.chr4             I 410 C 0
s macNem1.NW_012011356v1     1953483 13 -   2996164 aaGAGTTAACCTG
i macNem1.NW_012011356v1   I 2418 C 0
s cerAty1.NW_012001495v1     1832072 13 -   2157725 aaGAGTTAACCTG
i cerAty1.NW_012001495v1   I 308 C 0
s chlSab2.chr17             28282513 13 -  71996105 aaGAGTTAACCTG
i chlSab2.chr17            I 1863 C 0
s manLeu1.NW_012104165v1     1959982 13 +   2316924 AAGAGTTAACCTg
i manLeu1.NW_012104165v1   C 0 I 576
s colAng1.NW_012115566v1     1840421 13 -   3067355 aaGAGTTAACCTG
i colAng1.NW_012115566v1   I 305 C 0
s calJac3.chr4             171369389 13 - 171630274 AACAGTTAATCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            196642 13 -    375362 aaGAGTTAACCTG
i saiBol1.JH378348         I 307 C 0
s cebCap1.NW_016108108v1      195926 13 -    373274 AAGAGCTAACCTG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      136754 13 -    285216 AAGAGTTAACCTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1511447  6 -   2232465 ATGAGC-------
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25867054 13 +  26524999 AAGGGTGAACATC
i canFam3.chr35            C 0 C 0

a score=11846.000000
s hg38.chr6_GL000254v2_alt    125107 7 +   4827813 TATACTG
s panTro5.chr6              29105295 7 + 175400573 TATACTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29339627 7 + 173848474 TATACTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5139819 7 +   6154872 TATACTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74140698 7 + 122973662 TATACTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29322832 7 + 172585720 TATGGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28983441 7 - 170955103 TATGGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1953496 7 -   2996164 TATGGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1832085 7 -   2157725 TATGGTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28282526 7 -  71996105 TATGGTG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1840434 7 -   3067355 TATGGTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171369402 6 - 171630274 TATACA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            196655 6 -    375362 TGTACA-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      195939 6 -    373274 TATACA-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      136767 6 -    285216 TGTACA-
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1511453 4 -   2232465 ---ACTG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25867067 6 +  26524999 TGTACT-
i canFam3.chr35            C 0 C 0
e manLeu1.NW_012104165v1     1959995 576 +   2316924 I

a score=210853.000000
s hg38.chr6_GL000254v2_alt    125114 24 +   4827813 AGAGTAC-ATGTGGCTTCAGGTTGT
s panTro5.chr6              29105302 24 + 175400573 AGAGTAC-ATGTGGCTTCAGGTTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29339634 14 + 173848474 AGAGTAC-ATGTGGC----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5139826 24 +   6154872 AGAGTAC-ATGTGGCTTCAGGTTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74140705 24 + 122973662 AGAGTAC-ATGTGGCTTCAGGTTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29322839 24 + 172585720 AGAGTAC-ATGTGGCTTCAGGTTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28983448 24 - 170955103 AGAGTAC-ATGTGGCTTCAGGTTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1953503 24 -   2996164 AGAGTAC-ATGTGGCTTCAGTTTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1832092 24 -   2157725 AGAGTAC-ATGTGGCTTCAGGTTGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28282533 24 -  71996105 AGAGTAC-ATGTGGCTTCAGGTTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1960571 24 +   2316924 AGAGTAC-ATGTGGCTTCAGGTTGT
i manLeu1.NW_012104165v1   I 576 C 0
s colAng1.NW_012115566v1     1840441 23 -   3067355 AGAGTAC-ATGTGG-TTCAGGTTGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171369408 25 - 171630274 AGTGTACAATGTGACTTCAGGTTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            196661 24 -    375362 AGCATAC-ATGTGACTTTAGCTTGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      195945 24 -    373274 AGCGTAC-ATGTGACTTTAGGTTGT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      136773 24 -    285216 AGCATAC-ACGTGACTTCAGATTGT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1511457  7 -   2232465 ------------------ACATTGT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25867073 23 +  26524999 -GAGTAC-AGGTGACTTTAGACTGT
i canFam3.chr35            C 0 I 280

a score=578121.000000
s hg38.chr6_GL000254v2_alt    125138 79 +   4827813 TCACATACATATATTTTCAGGTTGTTCATACA---TATTATATGCTATTATAAGGTATTTTAAACTACCATGAACACCACAA
s panTro5.chr6              29105326 79 + 175400573 TCACATACATATATTTTCAGGTTGTTCATACA---TATTATATGCTATTATAAGGTATTTTAAACTACCGTGAACACCACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29339648 64 + 173848474 ---------------TTCAGGTTGTTCATACA---TATTATATGCTATTATAAGGTATTTTAAACTACCGTGAACACCACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5139850 79 +   6154872 TCACATACATATATTTTCAGGTTGTTCATACA---TACTATATGCTATTATAAGGTATTTTAAACTACCATGAACACCACAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74140729 67 + 122973662 TCATATACATATGTTTTCAGGTTGTTCATACATATTATTATATGCTATTATAA---------------CATGAGCACTACAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29322863 82 + 172585720 TCATATACATGTGGCATCACGTTGTTCATACATATTATTATACGCTATTATAAGATATTTTAAACTTCCATGAGCACTGCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28983472 82 - 170955103 TCATATACATGTGGCATCACGTTGTTCATACATATTATTATACGCTATTATAAGATATTTTAAACTTCCATGAGCACTGCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1953527 82 -   2996164 TCATATACATGTGTCATCACGTTGTTCATACATATTATTATACGCTATTATAAGGTATTTTAAACTTCCATGAGCACTGCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1832116 82 -   2157725 TCATATACATGTGGCATCACGTTGTTCATACATATTATTATACGCTATTATAAGGTATTTTAAACTTCCATGAGCACTGCAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28282557 82 -  71996105 TCATATACATGTGGCATCACGTTGTTCATACATATTATTATACGCTATTATAATGTATTTTAAACTTCCATGAGCACTGCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1960595 82 +   2316924 TCATATACATGTGGCATCACGTTGTTCATACATATTATTATACGCTATTATAAGGTATTTTAAACTTCCATGAGCACTGCAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1840464 82 -   3067355 TCATATACATATGGCATCACGTTGTTCATACATATTATTATACACTATTATAAAGTATTTTAAACTTCCATGAGCACTGCAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171369433 61 - 171630274 TCATATAC---------------------ACACACTATTATACGCTATTATAAGGTATTTTAAACTGCCATGAGCACTACAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            196685 82 -    375362 TCATATACATATGGCTTCAGGTTGTTCATATATATTATTATATGCTATTATAAGGTATTTTAAACTGCCATGAGCACTACAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      195969 81 -    373274 TCAT-TACATGTGGCTTCAGGTTGTTCATACATGTTATTATACACTATTATAAGGTATTTTAAACTGCCATGAGCACTACAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      136797 57 -    285216 TCAT-------------------------ACACATCATTAAACGCTATTATAAGGTATGTTAAACTGTCATGAGCACTACAA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1511464 48 -   2232465 TCA---------------AGATTTTCC--------TATTATGTGAACACAT-AGGCATTTTGAGGCACC----------TAA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25867096 280 +  26524999 I

a score=1437805.000000
s hg38.chr6_GL000254v2_alt    125217 138 +   4827813 TAAAACATGGGAAAATGTTAATGATTTATTAGAGG---------------AAAAT--------------AACTCAGTTATGAATATTGAAGCCCATTCTA---AAGATAGAATTTTTGAAGCTAAAGAATATGCCCTAGATAACTACTATAGGTATTGTAAAAACAATT------T
s panTro5.chr6              29105405 138 + 175400573 TAAAACATGGGATAATGTTAATGATTTATTAGAGG---------------AAAAT--------------AACTCAGTTATGAATATTGAAGCCCATTCTA---AAGATAGAATTTTTGAAGCTAAAGAATATGCCCTAGATAACTACTATAGGTATTGTAAAAACAATT------T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29339712 138 + 173848474 TAAAACATGGGATAATGTTAATGATTTATTAGAGG---------------AAAAT--------------AACTCAGTTATGAATATTGAAGCCCATTCTA---AAGATAGAATTTTTGAAGCTAAAGAATATGCCCTAGATAACTACTATAGGTATTGTAAACACAATT------T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5139929 138 +   6154872 TAAAACATGGGAAAATGTTAATGATTTATTAGAGG---------------AAAAT--------------AACTCAGTTATGAATATTGAAGCCCATTCTA---AAGATAGAATTTTTGAAGCTAAAGAATATGCCCTAGATAACTACTATAGGTATTGTAAAAACAATT------T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74140796 139 + 122973662 TAAAACATGAGAAAATGTTAATGATT-----ACAG---------------GAAAT--------------AACTCAGTTATGAATATTGAAGTCCATTCTA---ACGATAGAACCTTTGAGGCTAAAGAAAATGCCCTAGATAACTACTATAGGTATTGTAAAAACAGTTTCTCTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29322945 142 + 172585720 TAAAACATGGGAAAATGTTAATGATTTATTACAGT---------------AAAAT--------------AACT--GTTATGAATATTGAAGCCCATTCTA---AAGATAGAACTATTGAAGCTAAAGAAAATGCCCTAGATAACTACTATAGGTATTGTAAAAACAGTTTCTCTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28983554 142 - 170955103 TAAAACATGGGAAAATGTTAATGATTTATTACAGT---------------AAAAT--------------AACT--GTTATGAATATTGAAGCCCATTCTA---AAGATAGAACTATTGAAGCTAAAGAAAATGCCCTAGATAACTACTATAGGTATTGTAAAAACAGTTTCTCTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1953609 142 -   2996164 TAAAACATGGGAAAATGTTAATGATTTATTAGAGT---------------AAAAT--------------AACT--GTTATGAATATTGAAGCCCATTCTA---AAGATAGAACTATTGAAGCTAAAGAAAATGCCCTAGATAACTACTATAGGTATTGTAAAAACAGTTTCTCTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1832198 142 -   2157725 TAAAACATGGGAAAATGTTAATGATTTATTAGAGT---------------AAAAT--------------AACT--GTTATGAATATTGAAGCCCATTCTA---AAGATAGAACTATTGAAGCTAAAGTAAATGCCCTAGATAACTACTATAGGTATTGTAAAAACAGTTTCTCTGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28282639 142 -  71996105 TAAAACATGGGAAAATGTTAATGATTTATTAGAGT---------------AAAAT--------------AACT--GTTATGAATATTGAAGCCCATTCTA---AAGATAGAACTATTGAAGGTAAAGAAAATGCCCTAGATAACTACTATAGGTATTGTAAAAACAGTTTCTCTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1960677 142 +   2316924 TAAAACATGGGAAAATGTTAATGATTTATTAGAGT---------------AAAAT--------------AACT--GTTATGAATATTGAAGCCCATTCTA---AAGATAGAACTATTGAAGCTAAAGTAAATGCCCTAGATAACTACTATAGGTATTGTAAAAACAGTTTCTCTGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1840546 142 -   3067355 TAAAACATGGGAAAATGTTAATGATTTATTAGAGG---------------AAAAT--------------AACT--GTTACGAATATTGAAGCCCATTCTA---AAGATAGAACTATTGAAGCTAAAGAAAATGCCCTAGATAACTACTATAGGTATTGTAAAAACAGTTTCTCTGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171369494 135 - 171630274 TAAAACACGCGAACAGAT---TGATTTATCAGAGG---------------AAAAT--------------AACTCAGTTGTGAATATTAAAGCCCATTCCA---AAGTTAGAACTTTTGAAGCTAGAGCAAACGCCCTAGACAACTACTATAGGTATCGTAAAAACCGTTT------
i calJac3.chr4             C 0 I 6
s saiBol1.JH378348            196767 138 -    375362 TAAAACATGGGAAAATGTTAATGATTTATCAGAGG---------------AAAAT--------------AACTCAGTTGTGTATATTCAAGCCCATTCTA---AAGTTAGAACTTTCGAGGCTAGAGCAACTGCCCTAGACAACTACTATAGGTATTGTAAAAACAGTTT------
i saiBol1.JH378348         C 0 I 6
s cebCap1.NW_016108108v1      196050 138 -    373274 TAAAACACGGGAAAATGTTAATGATTTATCAGAGG---------------AAAAT--------------AACTCAGTTGTGAATATTAAAGCCCATTCTA---AAGTTAGAACTTTTGAGGCTAGAGCAACTGCCCTAGACAACTACTATACGTATTGTAAAAACAGTTT------
i cebCap1.NW_016108108v1   C 0 I 6
s aotNan1.NW_018494050v1      136854 140 -    285216 TACAACACGGGAAAATATTAATGA-TTATTAGAGG---------------AAAAT--------------AACTCAGTTGTGAATATTAAAGCCCATTCTAAAGAAGTTAGAACTTTTGAAGCTAGAGCAACTGTCCTAGACAACTACTATAGGTATCGTAAAAACAGTTT------
i aotNan1.NW_018494050v1   C 0 I 369
s otoGar3.GL873742           1511512 153 -   2232465 AGAAACATGGAAAATCATTAATGATACATTAGAGGAAAAGTGAGATTGGAAAAAT--------------AACTCAATTATGAATATTGAAGCCCATTATA---AAGTTAGAACTTTTGAAGGTAAAGAAAATGCTCTAAACAACTACTATTGGCATTATAGAAACAGTCT------
i otoGar3.GL873742         C 0 I 9
s canFam3.chr35             25867376 148 +  26524999 TAAAAACTGGAAAAAA---AATGAATGATTAGAGG---------------AAACTCAACATCTGAGAAAAGCTCAATTCTGAATGTTGAAACCTATTCTA---AAGCTAGACCTTTTCAAGCTAAAGAAAATGCCCTGGACAATTACTCCCGGGATTGTAAAAACAGTT-------
i canFam3.chr35            I 280 C 0

a score=2693009.000000
s hg38.chr6_GL000254v2_alt    125355 305 +   4827813 GTTTTGAAAACCCAG-AGGGCATATTCAAAAACAAGAATCTACCATAC-------------------------AGAAAGGTAGTCGCCATCTCAAAACTCTCATATATAGCAAAGGACTTTGGTCTTCCCAAGATAGCCATTTGGTTGTGCCTAAGTCATTCCCCA--------GAACTTTGATGTGCCTCGCACATGAAAGCACCCATAAATAATGGCA-AGAACAAATTCACTACAAATTTTCAAAATTATTGTTA-GAAAATTTTTCTCAAGAAGCTCTATGGGTAGATGAATCTTTTCTTCTCTGTGTTGATCATAA---CCCTCCAAAAAACTAAAACT
s panTro5.chr6              29105543 305 + 175400573 GTTTTGAAAACCCAG-AGGGCATATTCAAAAACAAGAATCTACCATAC-------------------------AGAAAGGTAGTCGCCATCTCAAAACTCTCATATATAGCAAAGGACTTTGGTCTTCCCAAGATAGCCATTTGGTTGTGCCTAAGTCATTCCCCA--------GAACTTTGATGTGCCTCGCACATGAAAGCACCCATAAATAATGACA-AGAACAAATTCACTACAAATTTTCAAAATTATTGTTA-GAAAATTTTTCTCAAGAAGCTCTATGGGTAGCTGAATCTTTTCTTCTCTGTGTTGATCATAA---CCCTCCAAAAAACTAAAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29339850 305 + 173848474 GTTTTGAAAACCCAG-AGGGCATATTCAAAAACAAGAATCTACCATAC-------------------------AGAAAGGTAGTCGCCATCTCAAAACTCTCATATATAGCAAAGGACTTTGGTCTTCCCAAGATAGCCATTTGGTTGTGCCTAAGTCATTCCCCA--------GAACTTTGATGTGCCTCGCACATGAAAGCACCCATAAATAATGGCA-AGAACAAATTCACTACAAATTTTCAAAATTATTGTTA-GAAAATTTTTCTCAAGAAGCTCTATGGGTAGCTGAATCTTTTCTTCTCTGTGTTGATCATAA---CCCTCCAAAAAACTAAAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5140067 305 +   6154872 GTTTTGAAAACCCAG-AGGGCATATTCAAAAACAAGAATCTACCATAC-------------------------AGAAATGTAGTCGCCATCTCAAAACTCTCATATATAGCAAAGGACTTTGGTCTTCCCAAGATAGCCATTTGGTTGTGCCTAAGTCATTCTCCA--------GAACTTTGATGTGCCTCGCACATGAAAGCACCCATAAATAATGGCA-AGAACAAATTCACTACAAATTTTCAAAATTATTGTTA-GAAAATTTTTCTTAAGAAGCTCTATGGGTAGCTGAATCTTTTCTTCTCTGTGTTGATCATAA---CCCTCCAAAAAACTAAAACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74140935 308 + 122973662 GTTTTGAAAACCCAG-AGGGCAAATTCAAAAACAAGAATCTACCATAC-------------------------AGAAAGATATTGGCCATCTCAAAACTCTCATATATGGCAAAGGACTTTGGTCTTCCCAAGATAGCCATTTGGTTGTGCCT--GTCATTCTCCAGAACTTTGGAACTTTGATGTGCCTAGCACATAAAAGCACCCATAAATAATGGCA-AGAACAAATTCACTCCAAATTTTCAAAATTATTGTTA-GAAAATTTTCCTCAAGAAGCTCTACGGGTGGCTGAATCTT---TTCTCTGTGTTGATCATAA---CCCTCCAAAAACCTAAAACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29323087 302 + 172585720 GTTTTGAAAACCCAGAAGAGCATATTCAAAAACAAGAATCTACCATAC-------------------------GGAAAGGTATTGGCCATCTCAAAACTCTCATATACGGCAAAGGACTTTGGTCTTCCCAAGATAGCCATCTGGTGGCACCTAAGTCATTCTCCA--------GAACCTTGATGTGCCTAGCACATGAAAGCACCCATAAATAACGGCA-GAAACAAATTCACTCCAAATTTTCAAGATTATTGTTA-GAAAATTTTCCTCAAGAAGCTCTATGGGTGGCTGAATCTTTTCTTCTCTGTGTTGATCGTAA---CCCTCCAAAAAACTGA----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28983696 302 - 170955103 GTTTTGAAAACCCAGAAGAGCATATTCAAAAATAAGAATCTACCATAC-------------------------GGAAAGGTATTGGCCATCTCAAAACTCTCATATACGGCAAAGGACTTTGGTCTTCCCAAGATAGCCATCTGGTGACGCCTAAGTCATTCTCCA--------GAACCTTGATGTGCCTAGCACATGAAAGCACCCATAAATAACGGCA-GAAACAAATTCACTCCAAATTTTCAAGATTATTGTTA-GAAAATTTTCCTCAAGAAGCTCTATGGGTGGCTGAATCTTTTCTTCTCTGTGTTGATCGTAA---CCCTCCAAAAAACTGA----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1953751 302 -   2996164 GTTTTGAAAACCCAGAAGAGCATATTCAAAAACAAGAATCTACCATAC-------------------------GGAAAGGTATTGGCCATCTCAAAACTCTCATATACGGCAAAGGACTTTGGTCTTCCCAAGATAGCCATCTGGTGGCGCCTAAGTCATTCTCCA--------GAACCTTGATGTGCCTAGCACATGAAAGCACCCATAAATAACGGCA-GAAACAAATTCACTCCAAATTTTCAAGATTATTGTTA-GAAAATTTTCCTCAAGAAGCTCTATGGGTGGCTGAATCTTTTCTTCTCTGTGTTGATCGTAA---CCCTTCAAAAAACTGA----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1832340 302 -   2157725 GTTTTGAAAACCCAGAAGAGCATATTCAAAAACAAGAATCTACCATAC-------------------------GGAAAGGTATTGGCCATCTCAAAACTCTCATATACGGCAAAGGACTTTGGTCTTCCCAAGATAGCCATCTGGTGGCGCCTAAGTCATTCTCCA--------GAACCTTGATGTGCCTAGCACATGAAAGCACCCATAAATAACGGCA-GAAACAAATTCACTCCAAATTTTCAAGATTATTGTTA-GAAAATTTTCCTCAAGAAGCTCTATGGGTGGCTGAATCTTTTCTTCTCTGTGTTGATCGTAA---CCCTCCAAAAAACTGA----
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28282781 302 -  71996105 GTTTTGAAAACCCAGAAGAGCATATTCAAAAACAAGAATCTACCATAC-------------------------GGAAAGGTATTGGCCATCTCAAAACTCTCATATACGGCAAAGGACTTTGGTCTTCCCAAGATAGCCATCTGGTGGCGCCTAAGTCATTCTCCA--------GAACCTTGATGTGCCTAGCACATGAAAGCACCCATAAATAATGGCA-GGAACAAATTCACTCCAAATTTTCAAGATTATTGTTA-GAAAATTTTCCTCAAGAAGCTCTATGGGTGGCTGAATCTTTTCTTCTCTGTGTTGATCGTAA---CCCTCCAAAAAACTGA----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1960819 302 +   2316924 GTTTTGAAAACCCAGAAGAGCATATTCAAAAACAAGAATCTACCATAC-------------------------GGAAAGGTATTGGCCATCTCAAAACTCTCATATACGGCAAAGGACTTTGGTCTTCCCAAGATAGCCATCTGGTGGCGCCTAAGTCATTCTCCA--------GAACCTTGATGTGCTTAGCACATGAAAGCACCCATAAATAACGGCA-GAAACAAATTCACTCCAAATTTTCAAGATTATTGTTA-GAAAATTTTCCTCAAGAAGCTCTATGGGTGGCTGAATCTTTTCTTCTCTGTGTTGATCGTAA---CCCTCCAAAAAACTGA----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1840688 302 -   3067355 GTTTTGAAAACCCAGAAGAGCATATTCAAAAACAAGAATGTACCATAC-------------------------GGAAAGGTATTGGCCATCTCAAAACTCTCACATACGGCAAAGGACTTTGGTCTTCCCAAGATAGCCATCTGGTGGCGCCTAAGTCATTCTCCA--------GAACTTTGATGTGCCTAGCACATGAAAGCACCCACAAATAATGGCAGGAAAAAAATTCACTCCACATTTTCAAGATTATTGTTA-GAAAATTTTCCTCAGGAAGCTCTATGGGTGGCTGAATCTTTTCTTCTCTGTGTTGATCATAA---CTCTCCAAAAAACTG-----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171369635 294 - 171630274 GTTTAAAAAACCCAGATGGGTATATTCAAAAACAAGAATCTACCATAC-------------------------AGAAAGATATTGACCATCTCAAAACTCTC--AGAAGGCAAAGGACCTTGGTCTTCCCAAAACAGCCATTGGGTGGCGCCTCGGTCGTTCTCCA--------GAACTTGGATGTGCTGAGCACGTGAAAGCACCCATAAAT-----GA-CGAACAAATTCACTCCAAATTTTCAAAATTATTGTTA-GAAAATTTTCCTCAAGAAGCTCTATGGGTGCCTGAATC-----TTCTTTGTGTTGAGCAAAA---CCCTACAAAAAACGACAGCA
i calJac3.chr4             I 6 C 0
s saiBol1.JH378348            196911 299 -    375362 GTTTAAAAAACCCAGACGGGCATATTCAAAAACAAGAATCTACCATAC-------------------------GGAAAGATAGTGACCATCTCAAAACTCTC--AGAAGGCAAAGGACCTTGGTCTTCCCAAAACAGCCATTGGGTGGCGCCTCAGTCATTCTCCA--------GAACTCGGATGTGCTGAACACTTGAAAGCACCCATAAATAAGGGAA-AGAACAAATTCACTCCAAATTTTCAAAATTATTCTTA-GAAAATTTTCCTCAAGAAGCTCTATGGGTGCCTGAATC-----TTCTTTATGTTTAGTCAAA---CCCTACAAAAAACTACAGCT
i saiBol1.JH378348         I 6 C 0
s cebCap1.NW_016108108v1      196194 301 -    373274 GTTTAAAAAACCCAGACGGGCATATTAAAAAACAAGAATCTACCATAC-------------------------AGAAAGATACTGACCTTGTCAAAACTCTC--AGAAGGCAAAGGACCTTGGTCTTCCCAAAACAGCCATTGGGTGGCGTCTCAGTCATTCTCCA--------GAACTTGGATGTGCTGAGCCCTTGAAAGCACCCATAAATAATGGCA-AGAACAAATTCACTCCAGATTTTCAAAATTATTGTTA-GAAAATTTTCCTCAAGAAGCTCTATGGGTGCCTGAATCTT---TTCTTTGTGTTGAGCAAAA---CCCTACAAAAACCTACAGCT
i cebCap1.NW_016108108v1   I 6 C 0
s otoGar3.GL873742           1511674 322 -   2232465 GTTTTAAA---CTAGAAGAGTATATTCAAAAACAAAAATCTACCATACTGAAAGATATTGGAAAAAAAAAAGAAAAAAGATATTGGCCGTATC-AAACTCTCATACCCAGCAAAGGACTTTGGTGTTCCCTGGACAGCCATTTGGTGGCACCTAAGTCATTCTCCA--------GAACCATGATGCTTATATTATAGGAAAGCAGCC--AAAGTGTGGCA-AAAGCAAATTTTGCCATATTTTTCAAAATTATCATTA-AAAAATGTTGCTTAGAAAACTCTATGGGTGTTTGAATTTT---TTATCTGTGTTTATCATAA---CCCTGCAAAAAACTAAAGCT
i otoGar3.GL873742         I 9 I 194
s canFam3.chr35             25867524 208 +  26524999 --------------------------------------------------------------------------------------------------TCTC--------CATGTGACTTTGGCCATCTT---ATGCCCTTGCGGGGGCGCCTGCGTCATTCTCCA--------GAACTCTAATGAGTCT--TACACGAAATTGCTCAAAA----TGGCA-AGGACAAATTC-CTCCAAACTTTCCAG-TTATTGTTAGGAAAAGTTTACCCAAGAAGCTCT--GGATGACTGAATCTTTTC-------TATTTATCATAAACCCCCTATCAAAAACAAAACA-
i canFam3.chr35            C 0 C 0
e aotNan1.NW_018494050v1      136994 369 -    285216 I

a score=91837.000000
s hg38.chr6_GL000254v2_alt    125660 12 +   4827813 ATAGCAAGGCTT
s panTro5.chr6              29105848 12 + 175400573 ATAGCAAGGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29340155 12 + 173848474 ATAGCAAGGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5140372 12 +   6154872 ATAGCAAGGCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74141243 12 + 122973662 ATAGCAAGGCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29323389 10 + 172585720 --AGCAAGGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28983998 10 - 170955103 --AGCAAGGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1954053 10 -   2996164 --AGCAAGGCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1832642 10 -   2157725 --AGCAAGGCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28283083 10 -  71996105 --AGCAAGGCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1961121 10 +   2316924 --AGCAAGGCTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1840990  6 -   3067355 ------AGGCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171369929 12 - 171630274 ATAGCAAGCCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            197210 12 -    375362 ATAGCAAGCTTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      196495 12 -    373274 ATGGCAAGCCTT
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1512190 12 -   2232465 atagtgagactc
i otoGar3.GL873742         I 194 C 0
s canFam3.chr35             25867732 12 +  26524999 AAACTAAAGCTC
i canFam3.chr35            C 0 C 0
e aotNan1.NW_018494050v1      136994 369 -    285216 I

a score=750126.000000
s hg38.chr6_GL000254v2_alt    125672 86 +   4827813 CAGTTTTCCACCTCCAGTACCATTTGCGCATTTACAAATGGATTTCATTCAGTTTTCCAA---AATTTTAAAAAATTGAACGTTGTTTC
s panTro5.chr6              29105860 86 + 175400573 CAGTTTTTCACCTCCAGTACCATTTGCGCATTTACAAATGGATTTTATTCAGTTTTCCAA---AATTTTAAAAAATTGAACGTTGTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29340167 86 + 173848474 CAGTTTTTCACCTCCAGTACCATTTGCGCATTTACAAATGGATTTTATTCAGTTTTCCAA---AATTTTAAAAAATTGAACGTTGTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5140384 86 +   6154872 CAGTTTTTCACCTCCAGTACCATTTGCGCATTTACAAATGGATTTTATTCAGTTTTCCAA---AATTTTAAAAAATTGAACGTTGTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74141255 85 + 122973662 CAGTTTTTCACCTCCAGTACCATTTGGGCATTTACAAATGGATTTTATTCAGTTTTCCAA---AATTTTAAAAAATTGAACG-TGTTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29323399 85 + 172585720 CAGTTTTTCATCTCCAGTACCGTTTGGGCATTTACAAATGGATTTTATTCAGTTATCCAA---AATTTTTAAAAACTGAATG-TGTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28984008 85 - 170955103 CAGTTTTTCATCTCCAGTACCGTTTGGGCATTTACAAATGGATTTTATTCAGTTATCCAA---AATTTTTAAAAACTGAATG-TGTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1954063 85 -   2996164 CAGTTTTTCATCTCCAGTACCGTTTGGGCATTTACAAATGGATTTTATTCAGTTATCCAA---AATTTTAAAAAACTGAATG-TGTTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1832652 85 -   2157725 CAGTTTTTCATCTCCAGTACCGTTTGGGCATTTACAAATGGATTTTATTCAGTTATCCAA---AATTTTTAAAAACTGAATG-TGTTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28283093 85 -  71996105 CAGTTTTTCATCTCCAGTACCGTTTGGGCATTTACAAATGGATTTTATTCAGTTATCCAA---AATTTTTAAAAACTGAATG-TGTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1961131 85 +   2316924 CAGTTTTTCATCTCCAGTACCGTTTGGGCATTTACAAATGGATTTTATTCAGTTATCCAA---AATTTTTAAAAACTGAATG-TGTTTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1840996 85 -   3067355 CAGTTTTTTATCTCCAGTACCGTTGGGGCATTTACAAATGGATTTTATTCAGTTGTCCAA---AATTTTTAAAAATTGAACG-TGTTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171369941 85 - 171630274 CCGTTTTCCTCCTCAAGTACCATTTGGGCATTTACAAATGGATTTTATTCCTTTGTCCGA---AATTTTTAAAAATTGCACA-TGTTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            197222 85 -    375362 CCGGTTTTCACCTCAAGTACCATTTGGGCATTTACAAATAGATTTTATTCCGTTGTCCAA---AATTTTTAAAAATGGAACA-TGTTTC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      196507 85 -    373274 CCATTTTTCACCTCAAGTACCATTTGGGCATTTACAAATGGATTTTATTCCGTTGTCCAA---AATTTTTAAAAATTGAACA-TGTTTC
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1512202 87 -   2232465 CA-TTTTTCTCCTTAAGTACAATTTACATATTTACAAATAGATTTCATTCAGTTGTCCAATTTTTTTTTTTAATTTTGAACA-TGTTTT
i otoGar3.GL873742         C 0 I 412
e canFam3.chr35             25867744  0 +  26524999 C
e aotNan1.NW_018494050v1      136994 369 -    285216 I

a score=115456.000000
s hg38.chr6_GL000254v2_alt    125758 12 +   4827813 AACAATATTTTC
s panTro5.chr6              29105946 12 + 175400573 AACAATATTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29340253 12 + 173848474 AACAATATTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5140470 12 +   6154872 AACAATATTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74141340 12 + 122973662 AACAATATTTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29323484 12 + 172585720 AAGAATATTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28984093 12 - 170955103 AACAATATTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1954148 12 -   2996164 AACAATATTTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1832737 12 -   2157725 AACAATATTTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28283178 12 -  71996105 AACAATATTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1961216 12 +   2316924 AACAATATTTTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1841081 11 -   3067355 AAC-ATATTTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171370026 12 - 171630274 AACAATATCTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            197307 12 -    375362 AACAATATCTTC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      196592 12 -    373274 AACAATATCTTC
i cebCap1.NW_016108108v1   C 0 I 360
s otoGar3.GL873742           1512701 12 -   2232465 aataatattttc
i otoGar3.GL873742         I 412 C 0
e canFam3.chr35             25867744  0 +  26524999 C
e aotNan1.NW_018494050v1      136994 369 -    285216 I

a score=2751017.000000
s hg38.chr6_GL000254v2_alt    125770 297 +   4827813 AAAAGTAAAATTGTGTAA-TTTGGGTTGGACTGAAGCTTT-CTCTTCTAAAAGATTAATACTTTAAGTTagtgttgtcaaatagggctttttacaatgatgaaaatgttctatatctgtgctgtccacctggtaggtatgacatgccacgtgtggctattgagca-ttgaaatgggaatagtacaacAGC--TGTTACCAAAACCTAATAACAAGTAT-----CATTCAAAGCTTGCAGATTTTGTTTTTCCAACTGGGAAATACAAAACATTTAGCACTGTTAATGGACAGAGAAATCCACTTCAG
s panTro5.chr6              29105958 297 + 175400573 AAAAGTAAAATTGTGTAA-TTTGGGTTGGACTGAAGCTTT-CTCTTCTAAAAGATTAATACTTTAAGTTagtgttgtcaaatagggctttttacaatgatgaaaatgttctgtatctgtgctgtccacctggtaggtatgacatgccacgtgtggctattgagca-ttgaaatgggaatagtacaacAGC--TGTTACCAAAACCTAATAACAAGTAT-----CATTCAAAGCTTGCAGATTTTGTTTTTCCACCTGGGAAATACAAAACATTTAGCACTGTTAATGGACAGAGAAATCCACTTCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29340265 297 + 173848474 AAAAGTAAAATTGTGTAA-TTTGGGTTGGACTGAAGCTTT-CTCTTCTAAAAGATTAATACTTTAAGTTagtgttgtcaaatagggctttttacaatgatgaaaatgttctgtatctgtgctgtccacctggtaggtatgacatgccacgtgtggctattgagca-ttgaaatgggaatagtacaacAGC--TGTTACCAAAACCTAATAACAAGTAT-----CATTCAAAGCTTGCAGATTTTGTTTTTCCACCTGGGAAATACAAAACATTTAGCACTGTTAATGGACAGAGAAATCCACTTCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5140482 296 +   6154872 -AAAGTAAAGTTGTGTAA-TTTGGGTTGGACTGAAGCTTT-CTCTTCTAAAAGATTAATATTTTAAGTTagtgttgtcaaatagggctttttacaatgatgaaaatgttctatatctgtgctgtccaactggtaggtatgacatgccacgtgtggctattgagca-ttgaaatgggaatagtacaacAGC--TGTTACCAAAACCTAATAACAAGTAT-----CATTCAAAGCTTGCAGATTTTGTTTTTCCACCTGGGAAATACAAAACATTTAGCACTGTTAATGGACAGAGAAATCCACTTCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74141352 299 + 122973662 AAAAGTAAAATTGTATAATTTTGGGTTGGACTGAAGCTTT-CTCTTCTGAAAGATTAATACCTTAAGTTagtgttgtcaaatagggctttttacaatgatgaaaatgttctatatctgtgctgtccaactggtaggtatgacatgccacgtgtggctattgagca-ttgaaatgggaatagtacaacAGCTTTGTTACCAAAG-CTAATAACAAGTAT-----CATTCAAAGCTTGCAGATTTTGTTTTTCCACCTGGGAAATACAAAACATTTAACACTGTTAATGGACAGAGAAATCCACTTCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29323496 300 + 172585720 AAAAGTAAAATTGTGTAATTTTGGGTTGGACTGAAGCTTT-CTCTTCTAAAAGATTAATACTTTAAATTATTgttgtcaaatagggctttctacaatgatgaaaatgttctatatctgtgttgtccgattggtaggtatgacatgccacgtgtgactattgagcg-ttgaaataggaatagtacaaTAGCTCTGTTACCAAAACATAGTAACAAGTAT-----TATTCAAAGCTTGCAGATTTTGTTTTTCCACCTGGGAAATACAAAACATTTAGCACTGTTAATGGACAGAGAAATCCACTTCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28984105 300 - 170955103 AAAAGTAAAATTGTGTAATTTTGGGTTGGACTGAAGCTTT-CTCTTCTAAAAGATTAATACTTTAAATTATTgttgtcaaatagggctttctacaatgatgaaaatgttctatatctgtgctgtccgattggtaggtatgacatgccacgtgtgactattgagcg-ttgaaataggaatagtacaaTAGCTCTGTTACCAAAACATAGTAACAAGTAT-----TATTCAAAGCTTGCAGATTTTGTTTTTCCACCTGGGAAATACAAAACATTTAGCACTGTTAATGGACAGAGAAATCCACTTCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1954160 300 -   2996164 AAAAGTAAAATTGTGTAATTTTTGGTTGGACTGAAGCTTT-CTCTTCTAAAAGATTAATACTTTAAATTATTgttgtcaaatagggctttctacaatgatgaaaatgttctatatctgtgctgtccaattggtaggtatgacatgccacgtgtgactattgagcg-ttgaaataggaatagtacaaTAGCTCTGTTACCAAAACATAGTAACAAGTAT-----TATTCAAAGCTTGCAGATTTTGTTTTTCCACCTGGGAAATACAGAACATTTAGCACTGTTAATGGACAGAGAAATCCACTTCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1832749 300 -   2157725 AAAAGTAAAATTGTGTAATTTTGGGTTGGACTGAAGCTTT-CTCTTCTAAAAGATTAATACTTTAAATTATTgttgtccaatagggctttctacaatgatgaaaatgttctatatctgtgctgtccaattggtaggtatgacatgccacgtgtgactattgagcg-ttgaaataggaatagtacaaTAGCTCTGTTACCAACACATAGTAACAAGTAT-----CATTCAAAGCTTGCAGATTTTGTTTTTCCACCTGGGAAATACAAAACATTTAGCACTGTTAATGGACAGAGAAATCCACTTCAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28283190 296 -  71996105 AAAAGTAAAATTGTGTAATTGTGGGTTGGACTGAAGCTTT-CTCTTCTAAAAGATTAATACTTTAAATTATTgttgtcaaatagggctttctacaatgatgaaaaagt----tatctgtgctgtccaattggtaggtatgacatgccacgtgtgactactgagcg-ttgaaataggaatagtacaaTAGCTCTGTTACCAAAACATAGTAACAAGTAT-----CATTCAAAGCTTGCAGATTTTGTTATTCCACCTGGGAAATACAAAACATTTAGCACTGTTAATGGACAGAGAAATCCACTTCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1961228 300 +   2316924 AAAAGTAAAATTGTGTAATTTTGGGTTGGACTGAAGCTTT-CTCTTCTAAAAGATTAATACTTTAAATTATTgttgtcaaatagggctttctacaatgatgaaaatgttttatatctgtgctgtccaattggtaggtatgacatgccacgtgtgactattgagcg-ttgaaataggaatagtacaacAGCTCTGTTACCAAATCATAGTAACAAGTAT-----CATTCAAAGCTTGCAGATTTTGTTTTTCCACCTGGGAAATACAAAACATTTAGCACTGTTAATGGACAGAGAAATCCACTTCAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1841092 300 -   3067355 AAAAGTAAAATTGTGTAATTTTGGGTTGGACTGAAGCTTT-CTCTTCTAAAAGATTAATACTTTAAATTATTgttgtcagatagggcttcctacaatgatgaaaaagttctatatctgtgctgtccaattggtaggtatgacatgccacgtgtgactattgagcg-ttgaaataggaatagtacaacAGCTGTGTTACCAAAACATAATAACAAGTAT-----TATTCAAAGCTTGCAGATTTTGTTTTTCCACCTGGGAAATACAAAACATTTAGCACTGTTAATGGACAGAGAAATCCACTTCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171370038 299 - 171630274 AAAAGTAAAAC--TGTAATTTTTGGCCAGACTGCAGCTTT-CTCTTGTAAAAGATTAATACTTTAAGTTagtgctgtcaaatagggcgttttacaatgatgaaaatgttctgtatctgtgccatccagttggtgggtatgacatgccacgtgtggctactgagcatttgaaGGAGGAACAGTACAGCAGCTCTGTTATCAAAACATAATCACAAGTAT-----CATTCGAAGCTTGCAGATTTTGTTTTCCTACCTGGGAAATACATAATGTTCAGCACTGTCAATGGACACAGAAATCCAATTCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            197319 301 -    375362 AAAAGTAAAATTGTGTAATTTTTGGTCAGACTGCAGCTTT-CCCTTCTAAAAGATTAATACTTTAAGTTagtgttgtcaaacagggctttttacaatgatgaaaatgttctatatctgtgccatccacttggtaggtatgacatgccacatgtggctactgagcatttgaaaGAGGAACAGTACAGCAGCTCTGTTATCAAAACATAATCGCAAGTAT-----CATTCAAAGCTTGCAGATTTTGTTTTCCTACCTGGGAAATACAAAATGTCTGGCAATGTTAATGGACACAGAAATCCACTTCAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      196964 297 -    373274 AAAAGTAAAATTGTGTAATTTTTGGTCGGACTGCAGCTTT-CCCTTCTAAAAGATTAATACTTTAAGTTagtgttgtcaaatagggctttttacagtgatgaaaatgttctatatctgtgccacccagttggtaggtatgacacgccacatgtggctactgagcatttgaaaGAGGAACAGTACAGCAGCTCTGTTATCAAAACATAATCACAAGTAT-----CATTCAAAGCTTGCAGACTTTGTTTTCCTACCTGGGAAATACAAAATGTTTGGCACTGTT----GACACAGAAATCCACTTCAG
i cebCap1.NW_016108108v1   I 360 C 0
s otoGar3.GL873742           1512713 293 -   2232465 aaaagtaaaattatataatttttGGTTGGATTGAAGTTTTAATCTTCCAAAACATTAATACTTTAATTTagcattgtcaaataaaacttt-tacaatgatggtaatattctatatctgtgctgttgaagtgataggtataa-atgttacatatggctactgagcatttgcaatgtgactaaggtaacATC-CTGTTATT-----TTAAAAAAAAGTATATATACATT-AAACTTTACAGATTCTATTTTTCCAAATGGGAAAT-----GTCTTTAATACTTTTAATGGACAGAGAAATCCACTTTAG
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25867744   0 +  26524999 C
e aotNan1.NW_018494050v1      136994 369 -    285216 I

a score=1105035.000000
s hg38.chr6_GL000254v2_alt    126067 105 +   4827813 TAGTGAAATTCTTAAGATTCTCCCATTAAAACATACAC--TTT-TTGTCCTTATTCTCAAAA-TCTGAGAAAGCAACAC-----AAATTTATGGTCTTCTTTAAATCAACATTt
s panTro5.chr6              29106255 105 + 175400573 TAGTGAAATTCTTAAGATTCTCCCATTAAAACATACAC--TTT-TTGTCCTTATTCTCAAAA-TCTGAGAAAGCAACAC-----AAATTTATGGTCTTCTTTAAATCAACATTt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29340562 105 + 173848474 TAGTGAAATTCTTAAGATTCTCCCATTAAAACATACAC--TTT-TTGTCCTTATTCTCAAAA-TCTGAGAAAGCAACAC-----AAATTTATGGTCTTCTTTAAATCAACATTt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5140778 105 +   6154872 TAGTGAAATTCTTAAGATTCTCCCATTAAAACATACAC--TTT-TTGTCCTTATTCTCAAAA-TCTGAGAAAGCAACAC-----AAATTTATGGTCTTCTTTAAATCAACATTt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74141651 105 + 122973662 TAGCGAAATTCTTAAGAATCTCCCATTAAAACATATAC--TTT-TTGTTCTTATTCTCAAAA-TCTGAGAAAGCAACAC-----AAATTTATGGTCTTCTTTAAATCAACATTt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29323796 105 + 172585720 TAGGGAAATTCTTAAGATTCTCCCATTAAAACACACAT--TTT-TTGTTCTTATTCTCAAAA-TCTGAGAAAGCAGCAC-----AAATTTATGGTCTTCTTTAAATCAACATTt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28984405 105 - 170955103 TAGGGAAATTCTTAAGATTCTCCCATTAAAACACACAT--TTT-TTGTTCTTATTCTCAAAA-TCTGAGAAAGCAGCAC-----AAATTTATGGTCTTCTTTAAATCAACATTt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1954460 105 -   2996164 TAGGGAAATTCTTAAGATTCTCCCATTAAAACACACAT--TTT-TTGTTCTTATTCTCAAAA-TCTGAGAAAGCAGCAC-----AAATTTATGGTCTTCTTTAAATCAACATTt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1833049 105 -   2157725 TAGGGAAATTCTTAAGATTCTCCAATTTAAACACACAT--TTT-TTGTTCTTATTCTCAAAA-TCTGAGAAAGCAGCAC-----AAATTTATGGTCTTCTTTAAATCAACATTt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28283486 105 -  71996105 TAGGGAAATTCTTAAGATTCTCCCATTAAAACACACAT--TTT-TTGTTCTTATTCTCAAAA-TCTGAGAAAGCAGCAC-----AAATTTATGGGCTTCTTTAAATCAACATTt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1961528 105 +   2316924 TAGGGAAATTCTCAAGATTCTCCCATTAAAACACATAT--TTT-TTGTTCTTATTCTCAAAA-TCTGAGAAAGCAGCAC-----AAATTTATGGTCTTCTTTAAATCAACATTt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1841392 105 -   3067355 TAGTGAAATTCTTAAGATTCTCCCATTAAAACACACAC--TTT-TTGTTCTTATTCTCAAAA-TCTGAGAAAGCAGCAC-----AAATTTATGGTCTTCTTTAAATCAACATTt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171370337 105 - 171630274 TAGTGAAATTCTTAAGATTCTCCCATTAAGACATACAC--TTT-TTGTTCTTATTCTCAAAA-TCTGAGAAAGCAGCAC-----AAATTTATGGTCTTCTTTAAAGCAATCTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            197620 105 -    375362 TAGTGAAATTCTTAAGGTTCTCCCATTAAAACATATAC--TTT-TGGTTCTTATTCTCAAAA-TCTGAGAAAGCAGCAC-----AAATTTATGGTCTTCTTTAAAGCAGCATTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      197261 105 -    373274 CAGTGAAATTCTTAAGATTCTCCCATTAAAACATACAC--TTT-TTGTTCTTATTCTCAAAA-TCTGAGAAAGCAGCAC-----AAATTTATGGTCTTCTTTAAAGCAATATTT
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1513006 103 -   2232465 TGGCAAAATTATTAAAATTC----ATGAAAACATACTTCATTG-TTCTTATTATTCTCAAAATTCTGAAAAACTAGTAC-----AAATTTAT-GTTTTTTGAAAATCAACATTT
i otoGar3.GL873742         C 0 I 481
s canFam3.chr35             25867744 108 +  26524999 TAATGAAATTCTTAAGATCCTCCCATTAAAACATACAT--TTCATTGTCCTCATTCTCAAAA--CTGAGAAAGTAGCTCAAATTAAATTTATGG--TTTTTTAAATCAACATTT
i canFam3.chr35            C 0 I 12
e aotNan1.NW_018494050v1      136994 369 -    285216 I

a score=158219.000000
s hg38.chr6_GL000254v2_alt    126172 26 +   4827813 gaaaacaccatcgcaaaattacaact
s panTro5.chr6              29106360 26 + 175400573 gaaaacagcatcgcaaaattacaact
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29340667 26 + 173848474 gaaaacagcatcgcaaaattacaact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5140883 26 +   6154872 gaaaacaccatcgcaaaattacaact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74141756 25 + 122973662 gaaaacaccatcgcaaaattataac-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29323901 26 + 172585720 gaaaacaccattgtaaaattacaact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28984510 26 - 170955103 gaaaacaccattgtaaaattacaact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1954565 26 -   2996164 gaaaacaccattgtaaaattacaact
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1833154 26 -   2157725 gaaaacaccgttgtaaaatcacaact
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28283591 26 -  71996105 gaaaacaccgttgtaaaattacaact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1961633 26 +   2316924 gaaaacaccgttgtaaaattacaact
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1841497 26 -   3067355 gaaaacaccgttgtaaaattacaact
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171370442 16 - 171630274 GAAAACACCATTACCa----------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            197725 16 -    375362 GAAAACACCATTGGAa----------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      197366 16 -    373274 GAAAACACTATTGCAG----------
i cebCap1.NW_016108108v1   C 0 C 0
s canFam3.chr35             25867864 26 +  26524999 AAGAACTTTATCCTAAAATTCTACCT
i canFam3.chr35            I 12 I 565
e otoGar3.GL873742           1513109 481 -   2232465 I
e aotNan1.NW_018494050v1      136994 369 -    285216 I

a score=5606566.000000
s hg38.chr6_GL000254v2_alt    126198 682 +   4827813 gagacagt--g--agagatctaacctaaccaattccatcttgcttctaacctccaagctgtccttgttcattcctg-----gtcgtaggctgacctaactttgggaggaacttagttta---tagtttagctttgaaacaaagacaatagcagccctttccaaaacaaacccgcttcctgcctg-gggactagactgctttcgcaggactaacaaattagccacaagattataaattatggtttaggagtcatgcagctggaggctgcaagattctaaacctcccccaattgctcctcaggataacatcactattgtaaaaccgaagatcagttcttgagatattttgcagcccctgtactctatggatcagctagcaccacccataacgataaactggctcatctggtcttgtggcccccatccagaaattaagccaacacaagaggacagcttcgactccctctgatttcatctccgacccgactaatcaactttcccaactcactggtcccctacccaccaaattatcctt-aaaaactgcaatccacttggggagactgatttgaataataataaaacgggtct--cccacacagccggctttgcatgccc--gtcttgataaatggttctgtctaggcagtgggcaagctgaactcattgggtggttacaCATTTTCAAATTTTCAGAGCTTTCC
s panTro5.chr6              29106386 682 + 175400573 gagacagt--g--agagatctaacctaaccaattccatcttgcttctaacctccaagctgtccttgttcattcctg-----gtcgtaggctgacctaactttgggaggaacttagttta---tagtttagctttgaaacaaagacagtagcagccctttccaaaacaaacccgcttcctgcctg-gggactagactgctttcgcaggactaacaaattagccacaagattataaattatggtttaggagtcatgcagctggaagctgcaagattctaaacctcccccaattgctcctcaggataacatcactattgtaaaaccgaagatcagttctcgagatattttgcagcccctgtactctatggatcagctagcaccacccataacgataaactggctcatctggtcttgtggcccccatccagaaattgagccaacacaagaggacagcttcgactccctctgatttcatctccgacccgactaatcaacttcccaaactcactggtcccctacccaccaaattatcctt-aaaaactgcaatccacttggggagactgatttgaataataataaaacgggtct--cccacacagccggctttgcatgccc--gtcttgataaatggttctgtctaggcagtgggcaagctgaactcattgggtggttacaCATTTTCAAATTTTCAGAGCTTTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29340693 682 + 173848474 gagacagt--g--agagatctaacctaaccaattccatcttgcttctaacctccaagctgtccttgttcattcctg-----gtcgtaggctgacctaactttgggaggaacttagttta---tagtttagctttgaaacaaagacagtagcagccctttccaaaacaaacccgcttcctgcctg-gggactagactgctttcgcaggactaacaaattagccacaagattataaattatggtttaggagtcatgcagctggaagctgcaagattctaaacctcccccaattgctcctcaggataacatcactattgtaaaaccgaagatcagttctcgagatattttgcagcccctgtactctatggatcagctagcaccacccataacgataaactggctcatctggtcttgtggcccccatccagaaattgagccaacacaagaggacagcttcgactccctctgatttcatctccgacccgactaatcaacttcccaaactcactggtcccctacccaccaaattatcctt-aaaaactgcaatccacttggggagactgatttgaataataataaaacgggtct--cccacacagccggctttgcatgccc--gtcttgataaatggttctgtctaggcagtgggcaagctgaactcattgggtggttacaCATTTTCAAATTTTCAGAGCTTTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5140909 683 +   6154872 gagacagt--g--agagatctaacctaaccaattccatcttgcttctaacctccaagctgtccttgttcattcctg-----gtcgtaggctgacctaactttgggaggaacttagttta---tagtttagctttgaaacaaagacaatagcagccctttccaaaacaaacccgcttcctgcctg-gggactagactgctttcgcaggactaacaaattagccacaagattataaattatggtttaggagtcatgcagctggaggctgcaagattctaaacctcccccaattgctcctcgggataacatcactattgtaaaaccgaagatcagttcttgagatattttgcagcccctgtactctatggatcagctagcaccacccataacgataaactggctcatctggtcttgtggcccccatccagaaattgagccaacacaagaggacagcttcgactccctctgattttaactccgacccgactaatcaactttcccaactcactggtcccctacccaccaaattatccttaaaaaacggcaatccacttggggagactgatttgaataataataaaacgggtct--cccacacagccggctccgcatgccc--gtcttgataaatggttctgtctaggcagtgggcaagctgaactcattgggtggttacaCATTTTCAAATTTTCAGAGCTTTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74141781 685 + 122973662 -agacagt--gaaagagatctaacctaaccaattccatcttgcttctaacctccaagctgtccttgttcattcctg-----gtcgtaggctgacctaactttgagaggaacttagttta---tagtttagctttggaacaaagacaaaagcagccctttccaaaacgaacccacttcctgcctg-gggactagactgcttttgcaggactaacaaattagccacaagattagaaattatggtttaggagtcatgcagctggaggctgcaagattctaaacctccccaaattgctcctcgggataacatcagtattgtaaaaccgaagatcagtgcttgagatattttgcagaccccgcactctatggatcagctggcaccacccataacgataaactggctcatctggtcttgtggcccccatccaggaattgagccaaagcaagaggacagcttcgactccatctgatttcatctcccacccaaccaatcaactttcccaactcactggtcccctacccaccaaattatcctt-aaaaactccaatccacttggggagactgatttgagtaataataaaacgggtct--cccacacagccggctctgcaagcccctgtcttgataaatggttctgtctaggcagtgggcaagctgaactcattgggtggttacaCATTTTCAAATTTTCAGAGCTTTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29323927 683 + 172585720 gagacagt--a--agagatctcacctaaccaattccatctcttttctaacctccaagctgtccttgttcattcctg-----gtcatagactggcctaac--tgcgaggaacttagtttaacttagttcagctttgaaacaaagacaatagcagccgtttccaaaacacacccgcttcctgcctg-gggactagactgcttttgcaggactaacaaattagccacaagattagaaagtatggtttaggagttatgcagctggaggctgcaagattctaaacctccccaaattgctcctggggataacgtcactattgtaaaatctaagatcagtgcttgagatattttgcagaccctgcactctatggatcagcaggcaccacccataatgataaactgcctcatctggtcttgtggcccccatccaggaattgagtcaacacaagaggacaacttcgactccctctga-ttcatctccaacccaaccaatcaactttcccaa-tcactggtcccctacccaccaaattatcttt-aaaaactccagtccactcggggagactgatttgaataataataaaacgagtct--cccgcgcagccagctctgcatgcccctgtcttgataaatggttctgtctaggcagtgggcaagctgaacccattgggtggttacaCATTTTCAAATTTTCAGAGCTTTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28984536 683 - 170955103 gagacagt--a--agagatctcacctaaccaattccatctcttttctaacctccaagctgtccttgttcattcctg-----gtcatagactggcctaac--tgcgaggaacttagtttaacttagttcagctttgaaacaaagacaatagcagccgtttccaaaacacacccgcttcctgcctg-gggactagactgcttttgcaggactaacaaattagccacaagattagaaagtatggtttaggagttatgcagctggaggctgcaagattctaaacctccccaaattgctcctggggataacgtcactattgtaaaatctaagatcagtgcttgagatattttgcagaccctgcactctatggatcagcaggcaccacccataatgataaactgcctcatctggtcttgtggcccccatccaggaattgagtcaacacaagaggacaacttcgactccctctga-ttcatctccaacccaaccaatcaactttcccaa-tcactggtcccctacccaccaaattatcttt-aaaaactccaatctactcggggagactgatttgaataataataaaacgagtct--cccgcgcagccagctctgcatgcccctgtcttgataaatggttctgtctaggcagtgggcaagctgaacccattgggtggttacaCATTTTCAAATTTTCAGAGCTTTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1954591 683 -   2996164 gagacagt--a--agagatctcacctaaccaattccatctcttttctaacctccaagctgtccttgttcattcctg-----gtcatagactggcctaac--tgcgaggaacttagtttaacttagttcagctttgaaacaaagacaatagcagccgtttccaaaacacacccgcttcctgcctg-gggactagactgcttttgcaggactaacaaattagccacaagattagaaagtatggtttaggagttatgcagctggaggctgcaagattctaaacctccccaaattgctcctggggataacgtcactattgtaaaatctaagatcagtgcttgagatattttgcagaccctgcactctatggatcagcaggcaccacccataatgataaactgcctcatctggtcttgtggcccccatccaggaattgagtcaacacaagaggacaacttcgactccctctga-ttcatctccaacccaaccaatcaactttcccaa-tcactggtcccctacccaccaaattatcttt-aaaaactccaatccactcggggagactgatttgaataataataaaacgagtct--cccgcgcagccagctctgcatgcccctgtcttgataaatggttctgtctaggcagtgggcaagctgaacctattgggtggttacaCATTTTCAAATTTTCAGAGCTTTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1833180 685 -   2157725 gagacagtgaa--agagatctgacctaaccaattccatctcttttctaacctccaagctgtccttgttcattcctg-----gtcatagactggcctaac--tgcgaggaacttagtttaacttagttcagctttgaaacaaagacaatagcagccgtttccaaaacacacccgcttcctgcctg-gggactagactgcttttgcaggagtaacaaattagccacaagattagaaagtatggtttaggagttatgcagctggaggctgcaagattctaaacctccccaaattgctcctggggataaagtcactattgtaaaatctaagatcagtgcttgagatattttgcagaccctgcactctatggatcagcaggcaccacccatactgataaactgcctcatctggtcttgtggcccccatccaggaattgagtcaacacaagaggacaacttcgactccctctga-ttcatctccaacccgaccaatcaactttcccaa-tcactggtcccctacccaccaaattatcttt-aaaaactccaatccactcggggagactgatttgaataataataaaacgagtct--cccgcgcagccagctctgcatgcccctgtcttgataaatggttctgtctaggcagtgggcaagctgaacccattgggtggttacaCATTTTCAAATTTTCAGAGCTTTCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28283617 684 -  71996105 gagacagtgaa--agagatctgacctaaccaattccatctcttttctaacctccaagctgtccttgttcattccta-----gtcatagactggcctaac--tgcgaggaacttagtttaacttagttcagctttgaaacaaagacaatagcagccgtttccaaaacacacccgcttcctgcctg-gggactagacggcttttgcaggactaacaaattagccacaagattagaaagtatggtttaggagttatgcagctggaggcggcaagattctaaacctccccaaattgctcct-gggataacgtcactattgtaaaatctaagatcagtgcttgagatattttgcagaccctgtactctatggatcagcaggcaccacccataatgataaactgcctcatctggtcttgtggcccccatccaggaattgagtcaacacaagaggacaacttcgactccctctga-ttcatctccaacccgaccaatcaactttcccaa-tcactggtcccctacccaccaaattatcttt-aaaaactccgatccatttggggagactgatttgaataataataaaacgagtct--cccgcgcagccagctctgcatgcccctgtcttggtaaatggttctgtctaggcagtgggcaagctgaacccattgggtggttacaCATTTTCAAATTTTCAGAGCTTTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1961659 685 +   2316924 gagacagtgaa--agagatctgacctaaccaattccatctcttttctaacctccaagctgtccttgttcattcctg-----gtcatagactggcctaac--tgcgaggaacttagtttaacttagttcagctttgaaacaaagacaatagcagccgtttccaaaacacacccgcttcctgcctg-gggactagactgcttttgcaggagtaacaaattagccacaagattagaaagtatggtttaggagttatgcagctggaggctgcaagattctaaacctccccaaattgctcctggggataacgtcactattgtaaaatctaagatcagtgcttgagatattttgcagaccctgcactctatggatcagcaggcaccacccataatgataaactgcctcatctggtcttgtggcccccatccaggaattgagtcaacacaagaggacaacttcgactccctctga-ttcatctccaacccgaccaatcaactttcccaa-tcactggtcccctagccaccaaattatcttt-aaaaactccaatccactcggggagactgatttgaatactaataaaacgagtct--ccagcgcagccagctctgcatgcccctgtcttgataaatggttctgtctaggcagtgggcaagctgaacccattgggtggttacaCATTTTCAAATTTTCAGAGCTTTCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1841523 682 -   3067355 gagacagtgaa--agagatctgacctaaccagttccatctttcttctaacttccaggctgtccttgttcattcctg-----gtcatagactgacctaactttgtgaggaacttattttaacttagttcagctttgaaacaaagacaatagcagccgtttccaaaacacacccgcttcctgcctg-gagactagactg---ttgcaggactaacaaattagccacaagatt--taagtatggtttaggagttatgcagctggaggctgcaagattctaaacctccccaaattgctcctagggataacgtcactattgtaaaatctaagatcagtgcttgagatattttgcagaccctgtactctatggatcagcaggcaccacccataatgataaactgcctcatctggtcttgtggcccccatccaggaattgagtcaacacaagaggacaacttcgactccctctga-ttcatctcaaacccgaccaatcaactttcccaa-tcactggtctcctacccaccaaattatcctt-aaaaactccaatccacttggggagactgagttgaataataataaaatgagtct--cccgcacagccagctctgcatgcccctgtcttgataaatggttctgtctaggcagtgggcaagctgaacccattgggtggttacaCATTTTCAAATTTTCAGAGCTTTCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171370458 681 - 171630274 ----------a--agagatctgacctaaccaattccatctctcttctaacctccaagctgtccttgctcattccttcattccttgcaggctgacctaactttgggaggaacttagctga---tagtttagctttgaaacaaagacaatagcagccctttccaaaagaaacctccttcctgcctgcaggactagactgcttctgcaggactaacaaatcagccacaagattagaaaactcggcttaggagtcctgcagctggaggcggcaagactctaaacctccccagatcgctcctggggatagcatcactattgtaaaacctaagatcagtacttgagata-tttgcagacccctcactctgcggaccgactggcaccacccatcgcgataaaccggctcatctggccttgtggcctct-tccaggaactgagtcaaggcaggagtacagcttccacttcctgtgatttcatctctgacccaagcaatcaacattcccaactcactggtcccctgcctgccaaattatcctt-aaaaacgccagtccacttgcggaggctgatttcagtaacagtaaaacggcttttccccgcacagccggc-ctgcctgccgctgtcttgataaacgctcctgtctcggcagcgggcaagctaaacccattaggtggttacaCATTTTCACATTTTTAGATCTTTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            197741 673 -    375362 ----------a--agagatctgacctaaccaattccatctcgcttctaactcccaagctgtcgttgttcattcctg-----gttgtaggctgacctaactttggcaggaacttagctga---tagtttagctttgaaacaaagacaatagcagccctttcctaaagaaacctgcttcctgcctgcaggactagactgcttttgta-gactaacaaatcagccacaagattagaaaacttggcttaggagtcttgcagctggaggcggcaagactctaaacctccccagattgctcctggggattgcgtcactattgtaaaacctaagatcagtgcttgaggta-tttgcagaccccgcactctgtggactggctggcaccaccaatcacgataaaccggctcagctggtcttgtggcccct-tccaggaactcagtcaaggcaggaggacagcttccacttcctgtgatttcatctcctacccaaccaatcaacattcccaactcactggtcccctacccgccaaattatcctt-aaaaacgccagtccacttggggagagtgatttgagtaa---taaaacgggttttccccgcacggccggctctgcctgccgctgtcttgataaattgtcctgtcttggcagcaggcaagctaaacccattaggcggttacaCGTTTACAAATTTTCAGAGCTTTCC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      197382 676 -    373274 ----------a--agagatctgacctaaccaattccatgttgcttctaacctccaagctgtccttgttcatacctg-----gttgtaggctgacctaactttgggaggagcttaggtga---tagtttagctttgaaacaaagacaatagcagccctttcctaaagaaacctgcttcctccctgcaggactaggctgcttttgcaggactaacaaatcagccacaagattagaaaacatggcttaggagtcttgcagctggaggcggcaagactctaaacctccccagattgctcctggggatagcatcactattgtaaaacctaagatcggtgcttgagata-tttgcagaccccgcactccgtggactggccggcaccacccatcaagataaacctgctcagcaggtcttgtggcccct-tccaggatctgagtcaaggcaggaggacagcttccagttcctatgatttcatctccgatccaaccaatcaacattcccaactcactggtcccctacccgccaaattatcctt-aaaaacgccagtccacttggggagagtgatttgagtaacaataaaatgggttct-cccgcacagccggcactgcctgccgctgtcttgataaatggtcctgtcttagcagcgggcaagctaaacccattaggtggttacaTATTTTCAAATTTTCAGAGCTTTCC
i cebCap1.NW_016108108v1   C 0 C 0
e canFam3.chr35             25867890 565 +  26524999 I
e otoGar3.GL873742           1513109 481 -   2232465 I
e aotNan1.NW_018494050v1      136994 369 -    285216 I

a score=197226.000000
s hg38.chr6_GL000254v2_alt    126880 21 +   4827813 TTAGACTAAAACTTTACCATC
s panTro5.chr6              29107068 21 + 175400573 TTAGACTAAAACTTTACCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29341375 21 + 173848474 TTAGACTAAAACTTTACCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5141592 21 +   6154872 TTAGACTAAAACTTTACCATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74142466 21 + 122973662 TTAGACTAAAACTTTACCATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29324610 21 + 172585720 TTAGACTAAAATTTTACCATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28985219 21 - 170955103 TTAGACTAAAATTTTACCATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1955274 21 -   2996164 TTAGACTAAAATTTTACCATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1833865 21 -   2157725 TTAGACTAAAATTTTACCATC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28284301 21 -  71996105 TTAGACTAAAATTTTACCATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1962344 21 +   2316924 TTAGACTAAAATTTTACCATC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1842205 21 -   3067355 TTAGACTAAAATTTTACCATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171371139 21 - 171630274 TTAAACTAAAACTTTACCGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            198414 21 -    375362 TTAAACTAAAACTTTACCGTC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      198058 21 -    373274 GTAAACTGAAATTTTACCATC
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1513590 17 -   2232465 TTAGACTAAAAT----CTGTC
i otoGar3.GL873742         I 481 C 0
e canFam3.chr35             25867890 565 +  26524999 I
e aotNan1.NW_018494050v1      136994 369 -    285216 I

a score=572281.000000
s hg38.chr6_GL000254v2_alt    126901 66 +   4827813 AGTCCTAAGGTAGTATGATCCATGCTACAAAACTCGCCATAAAACC-TTACTAT-GTAACACTGCTAT
s panTro5.chr6              29107089 66 + 175400573 AGTCCTAAGGCAGTATGATCTATGCTACAAAACTCGCCATAAAACC-TTACTAT-GTAACACTGCTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29341396 67 + 173848474 AGTCCTAAGGTAGTATGATCTATGCTACAAAACTCGCCATAAAACC-TTACTATGGTAACACTGCTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5141613 66 +   6154872 AGTCCTAAGGTAGTATGATCTATGCTACAAAACTCGCCATAAAACC-TTACTAT-GTAACACTGCTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74142487 66 + 122973662 AGTCCTAAGGTAATATGATCTATGCTACAAAACTCGCCATAAAACC-TTACTAT-ATAACACTGCTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29324631 67 + 172585720 AGTCCTAAGATAATATGATCTATGCTACAAAACTCGCCGTAAAAAAGTAACTAT-ATAGCACTGCTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28985240 67 - 170955103 AGTCCTAAGATAATATGATCTATGCTACAAAACTCGCCGTAAAAAAGTAACTAT-ATAGCACTGCTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1955295 67 -   2996164 AGTCCTAAGATAATATGATCTATGCTACAAAACTCGCCGTAAAAAAGTAACTAT-ATAGCACTGCTAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1833886 67 -   2157725 AGTCCTAAGATAATATGATCTATGCTACAAAACTCGCCGTAAAAAAGTTACTAT-ATAGCACTGCTAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28284322 67 -  71996105 AGTCCTAAGATAATATGATCTATGCTACAAAACTCGCCGTAAAAAAGTTACTAT-ATAGCACTGCTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1962365 67 +   2316924 AGTCCTAAGATAATATGATCTATGCTACAAAACTCGCCGTAAAAAAGTTACTAT-ATAGCACTGCTAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1842226 67 -   3067355 AGTCCTAAGATAATATGATCTATGATACAAAACTCGCCGTAAAAAAGTTACTAT-ATAGCACTGCTAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171371160 53 - 171630274 AGTCCTAAGGTAATATGAT-TAT------------GCCATAAAACC-TTCCTAC-ATAACGCTGCTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            198435 66 -    375362 AGCCCTACAGTAATATGATCTATGCTACAAAACTCGCCATAAAACC-TTGCTAC-ATAACACTGCTGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      198079 66 -    373274 AGTCCTACAGTAATATGATCTATGCTACAAAACTCGCCATAAAACC-TTCCTAC-ATAACACTGCTGT
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1513607 62 -   2232465 AATCCTAAGATAATATGATCTATGCCAC----CCTCCCATGAATCC-TTTGTAT-ATAACACTGCTAC
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25868455 64 +  26524999 AGTCCTAAGATAATATGATCTATGCCACAGAATC--CTACAAACCC-TTACCAC-AGAACATCATTAG
i canFam3.chr35            I 565 C 0
e aotNan1.NW_018494050v1      136994 369 -    285216 I

a score=119135.000000
s hg38.chr6_GL000254v2_alt    126967 15 +   4827813 AGAAATCTATAAAGT
s panTro5.chr6              29107155 15 + 175400573 AGAAATCTATAAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29341463 15 + 173848474 AGAAATCTATAAAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5141679 15 +   6154872 AGAAATCTATAAAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74142553 13 + 122973662 GGAAATCTAT--AGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29324698 15 + 172585720 AGAAATCTATAAAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28985307 15 - 170955103 AGAAATCTATAAAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1955362 15 -   2996164 AGAAATCTATAAAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1833953 15 -   2157725 AGAAATCTATAAAGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28284389 15 -  71996105 AGAAATCTATAAAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1962432 15 +   2316924 AGAAATCTATAAAGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1842293 15 -   3067355 AGAAATCTATAAAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171371213 15 - 171630274 GGAGATGTGTAAGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            198501 15 -    375362 GGAGATGTATAAAGC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      198145 15 -    373274 GGAGATGTATAAAGT
i cebCap1.NW_016108108v1   C 0 C 0
s canFam3.chr35             25868519 15 +  26524999 AAAACTGTGTACAAT
i canFam3.chr35            C 0 I 1034
e otoGar3.GL873742           1513669  0 -   2232465 C
e aotNan1.NW_018494050v1      136994 369 -    285216 I

a score=375686.000000
s hg38.chr6_GL000254v2_alt    126982 56 +   4827813 GTTTCCTTCGTAGGAGGGCCGTAGGCAGCCATGGCGCCCAGCAGGAATGGCATGAT
s panTro5.chr6              29107170 56 + 175400573 GTTTCCTTCGTAGGAGGGCCGTAGGCAGCCATGGCGCCCAGCAAGAATGGCATGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29341478 56 + 173848474 GTTTCCTTCGTAGGAGGGCCGTAGGCAGCCATGGCGCCCAGCAAGAATGGCATGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5141694 56 +   6154872 GTTTCCTTCGTAGGAGGGCCGTAGGCAGCCATGGCGCCCAGCAGGAATGGCATGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74142566 56 + 122973662 GTTTCCTGCGTAGGAGGGCTGTGGGCAGCCATGGCGTTAAGCAAGAATGGCATGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29324713 56 + 172585720 GTTTCCTGCGCAGGAGGGCCCATTACAGCCAAGGCGCCCAGCTGGAATGGCATGAT
i rheMac8.chr4             C 0 I 315
s macFas5.chr4              28985322 56 - 170955103 GTTTCCTGCGCAGGAGGGCCCATTACAGCCAAGGCGCCCAGCTGGAATGGCATGAt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1955377 56 -   2996164 GTTTCCTGCGCAGGAGGGCCCATTACAGCCAAGGCGCCCAGCTGGAATGGCATGAT
i macNem1.NW_012011356v1   C 0 I 6921
s cerAty1.NW_012001495v1     1833968 56 -   2157725 GTTTCCTGCGCAGGAGGGCCGATTACAGCCAAGGCGCCCAGCTGGAATGGCATGAT
i cerAty1.NW_012001495v1   C 0 I 307
s chlSab2.chr17             28284404 56 -  71996105 GTTTCCTGCGCAGGAGGGCCGATTACAGCCAAGGCGCCCAGCTGGAATGGCATGAT
i chlSab2.chr17            C 0 I 303
s manLeu1.NW_012104165v1     1962447 56 +   2316924 GTTTCCTGCGCAGGAGGGCCGATTACAGCCAAGGCGCCCAGCTGGAATGGCATGAT
i manLeu1.NW_012104165v1   C 0 I 862
s colAng1.NW_012115566v1     1842308 56 -   3067355 GTTTCCAGCGTAGGAGGGCCGATTACAGTCAAGGCACCCAGCTGGAATGGCATGAt
i colAng1.NW_012115566v1   C 0 I 301
s calJac3.chr4             171371228 54 - 171630274 GTCTCCTGCGCAGGA-GGCGGTGGGCAGCCGTGG-GCCCAGCCGGAATGGCGTGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            198516 51 -    375362 AT---CCGCGCAGGA-GGCAGTAGGCAGCCGTGG-GCCCAGCCGGAACGGCGTGAT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      198160 54 -    373274 GTCTCCTGCGCAGGA-GGCGGTAGGCAGCCGTGG-GCCCAGCCAGGATGGCGTGAT
i cebCap1.NW_016108108v1   C 0 C 0
e canFam3.chr35             25868534 1034 +  26524999 I
e otoGar3.GL873742           1513669  0 -   2232465 C
e aotNan1.NW_018494050v1      136994 369 -    285216 I

a score=2994.000000
s hg38.chr6_GL000254v2_alt    127038 3 +   4827813 GTT
s panTro5.chr6              29107226 3 + 175400573 GTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29341534 3 + 173848474 GTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5141750 3 +   6154872 GTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74142622 3 + 122973662 TTT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28985378 2 - 170955103 -tt
i macFas5.chr4             C 0 I 308
s calJac3.chr4             171371282 3 - 171630274 CCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            198567 3 -    375362 CCT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      198214 3 -    373274 CCT
i cebCap1.NW_016108108v1   C 0 C 0
e canFam3.chr35             25868534 1034 +  26524999 I
e otoGar3.GL873742           1513669 0 -   2232465 C
e aotNan1.NW_018494050v1      136994 369 -    285216 I
e colAng1.NW_012115566v1     1842364 301 -   3067355 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I
e chlSab2.chr17             28284460 303 -  71996105 I
e cerAty1.NW_012001495v1     1834024 307 -   2157725 I
e macNem1.NW_012011356v1     1955433 6921 -   2996164 I
e rheMac8.chr4              29324769 315 + 172585720 I

a score=905596.000000
s hg38.chr6_GL000254v2_alt    127041 432 +   4827813 GAAG-CCCCACTTCCACAAGGACTGGCAGCAGCGTGTGGCCACGTGGTTCAA---------CCAGAAGATCCGCAGAATCAAGGCCCG-GCAAGCCAAAGG-GC-GCTGCATCGCCC-CGC-GCCCGGAGAGTCGGGACCCATCTGGCCCATTGTGCTGTGCCCTGCTGTGCGTTATCACATCAAGGTGCGCGCCGGCAGAGGCTTCAGCCT---GGAGCTCAGGGTGGCGGGCATTCACAAGAAGGTGACCCGGACCACTGGCATCTC-------TGTGGATCCGAGGCGGCAGAACAAGTCCACCGATTCCCTGCAGGCCAATGTGCAGCGTCTGAATGAGTATTGCTCCAAACTCATCCTCTTCCCCAGAAAGCCCTCGGCCCCCAAGAAGGGAGACAGTTCTGCTGAAGAACAGAAATTGGCCACCCAGCTGACAGGACCGGTCATGCCCATC
s panTro5.chr6              29107229 432 + 175400573 GAAG-CCCCACTTCCACAAGGACTGGCAGCAGCGTGTGGCCACGTGGTTCAA---------CCAGAAGATCCGCAGAATCAAGGCCCG-GCAAGCCAAAGG-GC-GCTGCATCGCCC-CGC-GCCCGGAGAGTGGGGACCCATCTGGCCCATTGTGCTGTGCCCTGCTGTGCGTTATCACATCAAGGTGCGTGCCGGCAGAGGCTTCAGCCT---GGAGCTCAGGGTGGCGGGCATTCACAAGAAGGTGGCCCGGACCACTGGCATCTC-------TGTGGATCCGAGGAGGCAGAACAAGTCCACCGATTCCCTGCAGGCCAATGTGCAGCGTCTGAATGAGTATTGCTCCAAACTCATCCTCTTCCCCAGAAAGCCCTCGGCTCCCAAGAAGGGAGACAGTTCTGCTGAAGAACAGAAATTGGCCACCCAGCTGACAGGACCGGTCATGCCCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29341537 432 + 173848474 GAAG-CCCCACTTCCACAAGGACTGGCAGCAGCGTGTGGCCACGTGGTTCAA---------CCAGAAGATCCGCAGAATCAAGGCCCG-GCAAGCCAAAGG-GC-GCTGCATCGCCC-CGC-GCCCGGAGAGTGGGGACCCATCTGGCCCATTGTGCTGTGCCCTGCTGTGCGTTATCACATCAAGGTGCGTGCCCGCAGAGGCTTCAGCCT---GGAGCTCAGGGTGGCGGGCATTCACAAGAAGGTGGCCCGGACCACTGGCATCTC-------TGTGGATCCGAGGAGGCAGAACAAGTCCACCGATTCCCTGCAGGCCAATGTGCAGCGTCTGAATGAGTATTGCTCCAAACTCATCCTCTTCCCCAGAAAGCCCTCGGCCCCCAAGAAGGGAGACAGTTCTGCTGAAGAACAGAAATTAGCCACCCAGCTGACAGGACCGGTCATGCCCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5141753 432 +   6154872 GAAG-CCCCACTTCCACAAGGACTGGCAGCAGCGTGTGGCCACGTGGTTCAA---------CCAGAAGATCCGCAGAATCAAGGCCCG-GCAAGCCAAAGG-GC-GCTGCATCGCCC-CGC-GCCCGGAGAGTCGGGACCCATCTGGCCCATTGTGCTGTGCCCTGCTGTGCGTTATCACATCAAGGTGCGCGCCGGCAGAGGCTTCAGCCT---GGAGCTCAGGGTGGCGGGCATTCACAAGAAGGTGGCCCGGACCACTGGCATCTC-------TGTGGATCCGAGGAGGCAGAACAAGTCCACCGATTCCCTGCAGGCCAATGTGCAGCGTCTGAATGAGTATTGCTCCAAACTCATCCTCTTCCCCAGAAAGCCCTCGGCCCCCAAGAAGGGAGACAGTTCTGCTGAAGAACAGAAATTGGCCACCCAGCTGACAGGACCGGTCATGCCCATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74142625 429 + 122973662 GAAGCCCCCACTTCCACAAGGACTGGCAGCGAAGCGTGGCCACGTCGTTCAGCCAACCCGCCCAGAAGATCCGCAGAATCAACGCCCG-GCAAGCCTAAGG-GC-GCCGCATCGCCC-CGC-GCCC--AGAGTCGGGACCCATCCGGCCCATCGTGCTGTGCCCCGCTGTGCGGTATCA-----------GGGTCGGAAGAGGCTTCAGCCT---GGAGCTCAGGGTGGCGGGCATTCACAAGAAGGTGGCCCGGACCAGTGGCATCTC-------TGTGGATCCGAGGAGACAGAACAAGTCCACCGAGTCCCTGCAGGCCAATGTGCAGCGTCTGAAGGAATACTGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTTGGCTCCCAAGAAGGGAGACAGTTCTGCTGAAGAACAGAAATTAGCCACCCAGCTGACAGGACCAGTCATGCCCATC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171371285 449 - 171630274 GAAG-CCCCACTTCTCCCAGGACTGGCAGCGGCGCGTGGCCACGTGGTCCACCCAGCCGGCGCGGAAGATCCGCAGACTCAAGGCCCCCGCGAGCCAAAGGCGCGGCTGCATCGCCC-CGT-GCCC---GCGTCGAGACCCCTCCGGCCGCTCACGTGGTGCCCCCCTGTGAAGTATCAAACCAAGGTGTGTGCCCCCCGCGGCTGCAGCCTGGAGGAGCCCAGGGTGACGGACATTCACAAGAACTTGGCCGGGACCACTGGCATCTC--TAGATTGTGGCCCCGAGAAGGCAGAACAAATCCACCGAGGCCCTGCAGGCCAGTGTGCCGCGGCTGAAGGAGTACTTCTCCAAACGCACCCTCTTCCCCAGGAAGCCCTCGGCCCCCAAGAAGGGAGACAGTTCTGCTGAAGAACTGAAACTGGTCACCCAGCTGACAGGACCGGCCGTGCCCATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            198570 452 -    375362 TAAG-CCCCACTTCCCCCAGGACTGGCAGCGGCGCGTGGCCACGTGGTTCACCCAGCCTGCGCTGAAGATCCGCAGACTCAAGGCCCGCGCAAGCCAAAGGCGC-GCTGCATCGCCCGCGCGGCCC---GCGTTGAGACCCCTCTGGCTCCTCACGCGGTGCCCCCCTGTGCGGTATCAAACCAAGGTGTGCGCCCGCCGCGGCTTCAGCCCGGAGGAGCTCAGGGTGACGGACATTCACAAGAAGGTGGCTGGGATCACTGACATCTCTGTAGATTGTGGACTCGAGAGGGCAGCACAAGTCCACCGAGCCCCTGCAGGCCAATGTGCGGCGGCTCAAGGAGCACTTCTCCAAACGCACCCTCTTTCCCAGGAAGCCCTCGGCCCCCAAGAAGGGAGACAGTTCTGCTGAAGAACTGAAACTGGTCACCCAGCTGACAGGACCGGTCATGCCCATC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      198217 451 -    373274 GAAG-CCCCACTTCCCCCAGGACTGGCAGTGGCGCGTGCCCACGTGGTTCACCCAGCCGGCGCGGAAAATCCGCAGACTCAAGGCCCGCGCAAGCCAAAGGCGC-GCTGCATCGCCC-CGCGGCCT---GCGTAGAGACCCCTCTGGCCCCTCACGCGGTGCCCCCCTGTGCGGTATCAAACCAAGGTGTGCGCCCGCCGCGGCTTCAGCCTGGAGGAGCTCAGGGTGACGGACATTCACAAGAAGGTGGCCGGGACCACTGACATCTCTGTAGATTGTGGACCCGAGAAGGCAGCACAAGTCCACCGAGCCCCTGCAGGCCCATGTGCGGCGGCTGAAGGAGTACTTCTCCAAACGCACCCTCTTCCCCAGGAAGCCCTCGGCCCCCAAGAAGGGAGACAGTTCTGCTGAAGAACTGAAACTGATCACCCAGCTGACAGGACCAGTCATTCCCATC
i cebCap1.NW_016108108v1   C 0 I 366
e canFam3.chr35             25868534 1034 +  26524999 I
e otoGar3.GL873742           1513669   0 -   2232465 C
e aotNan1.NW_018494050v1      136994 369 -    285216 I
e colAng1.NW_012115566v1     1842364 301 -   3067355 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I
e chlSab2.chr17             28284460 303 -  71996105 I
e cerAty1.NW_012001495v1     1834024 307 -   2157725 I
e macNem1.NW_012011356v1     1955433 6921 -   2996164 I
e macFas5.chr4              28985380 308 - 170955103 I
e rheMac8.chr4              29324769 315 + 172585720 I

a score=6377.000000
s hg38.chr6_GL000254v2_alt    127473  8 +   4827813 AAGAA----TGT
s panTro5.chr6              29107661  8 + 175400573 AAGAA----TGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29341969  8 + 173848474 AAGAA----TGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5142185  8 +   6154872 AAGAA----TGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74143054 12 + 122973662 AGGAATATCTAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171371734  8 - 171630274 CGGAA----TTT
i calJac3.chr4             C 0 I 1070
s saiBol1.JH378348            199022  8 -    375362 CGGAA----TTT
i saiBol1.JH378348         C 0 I 7
e canFam3.chr35             25868534 1034 +  26524999 I
e otoGar3.GL873742           1513669  0 -   2232465 C
e aotNan1.NW_018494050v1      136994 369 -    285216 I
e cebCap1.NW_016108108v1      198668 366 -    373274 I
e colAng1.NW_012115566v1     1842364 301 -   3067355 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I
e chlSab2.chr17             28284460 303 -  71996105 I
e cerAty1.NW_012001495v1     1834024 307 -   2157725 I
e macNem1.NW_012011356v1     1955433 6921 -   2996164 I
e macFas5.chr4              28985380 308 - 170955103 I
e rheMac8.chr4              29324769 315 + 172585720 I

a score=1365.000000
s hg38.chr6_GL000254v2_alt    127481 1 +   4827813 A
s panTro5.chr6              29107669 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29341977 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5142193 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74143066 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378348            199037 1 -    375362 A
i saiBol1.JH378348         I 7 C 0
e canFam3.chr35             25868534 1034 +  26524999 I
e otoGar3.GL873742           1513669 0 -   2232465 C
e aotNan1.NW_018494050v1      136994 369 -    285216 I
e cebCap1.NW_016108108v1      198668 366 -    373274 I
e calJac3.chr4             171371742 1070 - 171630274 I
e colAng1.NW_012115566v1     1842364 301 -   3067355 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I
e chlSab2.chr17             28284460 303 -  71996105 I
e cerAty1.NW_012001495v1     1834024 307 -   2157725 I
e macNem1.NW_012011356v1     1955433 6921 -   2996164 I
e macFas5.chr4              28985380 308 - 170955103 I
e rheMac8.chr4              29324769 315 + 172585720 I

a score=18592.000000
s hg38.chr6_GL000254v2_alt    127482 7 +   4827813 AGGAGAA
s panTro5.chr6              29107670 7 + 175400573 AGGAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29341978 7 + 173848474 AGGAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5142194 7 +   6154872 AGGAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74143067 7 + 122973662 AGGAGAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171372812 7 - 171630274 AGGAGAA
i calJac3.chr4             I 1070 C 0
s saiBol1.JH378348            199038 7 -    375362 AGGAGAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      199034 7 -    373274 aggagAA
i cebCap1.NW_016108108v1   I 366 C 0
e canFam3.chr35             25868534 1034 +  26524999 I
e otoGar3.GL873742           1513669 0 -   2232465 C
e aotNan1.NW_018494050v1      136994 369 -    285216 I
e colAng1.NW_012115566v1     1842364 301 -   3067355 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I
e chlSab2.chr17             28284460 303 -  71996105 I
e cerAty1.NW_012001495v1     1834024 307 -   2157725 I
e macNem1.NW_012011356v1     1955433 6921 -   2996164 I
e macFas5.chr4              28985380 308 - 170955103 I
e rheMac8.chr4              29324769 315 + 172585720 I

a score=17676.000000
s hg38.chr6_GL000254v2_alt    127489 5 +   4827813 AGCCC
s panTro5.chr6              29107677 5 + 175400573 AGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29341985 5 + 173848474 AGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5142201 5 +   6154872 AGCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74143074 5 + 122973662 AGCCC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171372819 5 - 171630274 AGCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            199045 5 -    375362 AGCCC
i saiBol1.JH378348         C 0 I 375
s cebCap1.NW_016108108v1      199041 5 -    373274 AGCCC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      137363 5 -    285216 AGCCC
i aotNan1.NW_018494050v1   I 369 C 0
e canFam3.chr35             25868534 1034 +  26524999 I
e otoGar3.GL873742           1513669 0 -   2232465 C
e colAng1.NW_012115566v1     1842364 301 -   3067355 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I
e chlSab2.chr17             28284460 303 -  71996105 I
e cerAty1.NW_012001495v1     1834024 307 -   2157725 I
e macNem1.NW_012011356v1     1955433 6921 -   2996164 I
e macFas5.chr4              28985380 308 - 170955103 I
e rheMac8.chr4              29324769 315 + 172585720 I

a score=478014.000000
s hg38.chr6_GL000254v2_alt    127494 186 +   4827813 GAGTCATCACTGAGAAGTAGAGGAATTGCAAAGCTTTCGCTAGTCTCCGCATGGCCGGTGCCAATGCTTGGCGGCAATGCTCGGCTCTTCGGCATATGGGCAAAAAGAGCCAAGGAAGCTGAAAAACAGGATGTGTGAAAGCAAA-AATAAAGCCCTCTTGGGGACTTGTAATAAATACGTTTTAAA-
s panTro5.chr6              29107682 187 + 175400573 GAGTCATCACTGAGAAGTAGAGGAATTTCAAAGCTTTCGCTAGTCTCCGCATGGCCGGTGCCAATGCTTGGCGGCAATGCTCGGCTCTTCGGCATATGGGCAAAAAGAGCCAAGGAAGCTGAAAAACAGGATGTGTGAAAGAAAA-AATAAAGCCCTCTTGGGGACTTGTAATAAATACGTTTTAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29341990 187 + 173848474 GAGTCATCACTGAGAAGTAGAGGAATTTCAAAGCTTTCGCTAGTCTCCGCATGGCCGGTGCCAATGCTTGGCGGCAATGCTCGGCTCTTCGGCATATGGGCAAAAAGAGCCAAGGAAGCTGAAAAACAGGATGTGTGAAAGAAAA-AATAAAGCCCTCTTGGGGACTTGTAATAAATACGTTTTAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5142206 187 +   6154872 GAGTCATCACTGAGAAGTAGAGGAATTTCAAAGCTTTCGCTAGTCTCCGCATGGCCGGTGCCAATGATTGGCGGCAATGCTCGGCTCTTCGGCATATGGGCAAAAAGAGCCAAGGAAGCTGAAAAACAGGATGTTTGAAAGAAAA-AATAAAGCCCTCTCGGGGACTTGTAATAAATACGTTTTAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74143079 174 + 122973662 GAGTCATCACTGAGAAGTAGAGGAATTTCAAAGCTTTCGCTAGTCTCCGCATGGCCGGTGCCAATGCTT-------------GGCTCTTTGGCATATGGGCAAAAAGAGCCAAGGAAGCTGAAAAACAGGATGTTGAAAAGAAAA-AATAAAGCCCTCTTGGAGACTTGTAATAAATACGTTTTAAAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171372824 172 - 171630274 GAGTCAGCACTGAGAAGTAGAGGCCTTTCGAAGCTCTCCC--GTCTCCGCAGGGCCAGTGCCAACACCT-------------GGCTCTTTGGCATATGGGCAAAAAGAGCCAAGGAAGCTGCAAAACAGGATGTTGAAAGAAAAATGATAAAGCCCGCTTGGGGTCTTGTAACAGATAAA-TTTAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            199425 174 -    375362 GAGCTACCACTGAGAAGTAGAGGACTTTCAAAGCTTTCCCTAGTCTCAGCAGGGCCGGTGCCAACACCT-------------GGCTCTTTGACATACGGGCAAAAAGAGCCAAGGAAGCTGCAAAACAGGATGTTGAAAAGAAAA-AATAAAGCCCGCTTAGGGTCTTGTAATAGATAAATTTTAAAA
i saiBol1.JH378348         I 375 C 0
s cebCap1.NW_016108108v1      199046 174 -    373274 GAGTCACCACTGAGAAGTAGAGGACTTTCAAAGCTTTCCCTAGTCTCCGCAGGGCCGGTGCCAACACCT-------------GGCTCTTCGGCATATGGACAAAAAGAGCCAAGGAAGCTGCAAAACAGGATGTTGAAAAGAAAA-AATAAAGCCCGCTTGGGGTCTTGTAATAGATACATTTTAAAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      137368 172 -    285216 GAGTCACCACTGAGAAGTAGAGGACTTTCAAAGCTTTCCCTAGTCTCCG--GGGCCGGTGCCAACACCT-------------GGCTCTTTGGCATATGGGCAAAAAGAGACAAGGAAGCTGCAAAACAGGATGTTGAAAAGAAAA-AATAAAGCCCGCTTGGGGTCTTGTAATAGATAAATTTTAAAA
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25868534 1034 +  26524999 I
e otoGar3.GL873742           1513669   0 -   2232465 C
e colAng1.NW_012115566v1     1842364 301 -   3067355 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I
e chlSab2.chr17             28284460 303 -  71996105 I
e cerAty1.NW_012001495v1     1834024 307 -   2157725 I
e macNem1.NW_012011356v1     1955433 6921 -   2996164 I
e macFas5.chr4              28985380 308 - 170955103 I
e rheMac8.chr4              29324769 315 + 172585720 I

a score=136445.000000
s hg38.chr6_GL000254v2_alt    127680 36 +   4827813 AGAAATCTATAAAGTTTAAACTGATTCTTCCTCTGA
s panTro5.chr6              29107869 36 + 175400573 AGAAATCTATAAAGTTTAAACTGATTCTTCCTCTGA
i panTro5.chr6             C 0 I 937
s panPan2.chr6              29342177 36 + 173848474 AGAAATCTATAAAGTTTAAACTGATTCTTCCTCTGA
i panPan2.chr6             C 0 I 934
s gorGor5.CYUI01015250v1     5142393 36 +   6154872 AGAAATCTATAAAGTTTAAACTGATTCTTCCTCTGA
i gorGor5.CYUI01015250v1   C 0 I 939
s nomLeu3.chr1a             74143253 36 + 122973662 AGAAATCTATAAAGTTTAGACTGATTCTTCCTCTGA
i nomLeu3.chr1a            C 0 I 942
s calJac3.chr4             171372996 36 - 171630274 AGAAATCTATAAAGTTTAGACTGATTCTTCCTCTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            199599 36 -    375362 AGAAATCTATGAAGTTTAGACTGATTCTTTCTCTGA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      199220 36 -    373274 AGAAATCTATAAAGTTTAGATTGATTCTTCCTCTGA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      137540 36 -    285216 AGAAATCTGGAAAGTTTAGACTGATTCTTCCTCTGA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1513669 36 -   2232465 AGAAAACTATAAAGTTTAGATTGGTTCTTGCTCTGA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25868534 1034 +  26524999 I
e colAng1.NW_012115566v1     1842364 301 -   3067355 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I
e chlSab2.chr17             28284460 303 -  71996105 I
e cerAty1.NW_012001495v1     1834024 307 -   2157725 I
e macNem1.NW_012011356v1     1955433 6921 -   2996164 I
e macFas5.chr4              28985380 308 - 170955103 I
e rheMac8.chr4              29324769 315 + 172585720 I

a score=8595.000000
s hg38.chr6_GL000254v2_alt    127716 2 +   4827813 ca
s panTro5.chr6              29108842 2 + 175400573 ca
i panTro5.chr6             I 937 C 0
s panPan2.chr6              29343147 2 + 173848474 ca
i panPan2.chr6             I 934 C 0
s gorGor5.CYUI01015250v1     5143368 2 +   6154872 ca
i gorGor5.CYUI01015250v1   I 939 C 0
s nomLeu3.chr1a             74144231 2 + 122973662 ca
i nomLeu3.chr1a            I 942 C 0
s calJac3.chr4             171373032 2 - 171630274 CA
i calJac3.chr4             C 0 I 1216
s saiBol1.JH378348            199635 2 -    375362 CA
i saiBol1.JH378348         C 0 I 1251
s cebCap1.NW_016108108v1      199256 2 -    373274 CA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      137576 2 -    285216 CA
i aotNan1.NW_018494050v1   C 0 I 1314
s otoGar3.GL873742           1513705 2 -   2232465 CA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25868534 1034 +  26524999 I
e colAng1.NW_012115566v1     1842364 301 -   3067355 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I
e chlSab2.chr17             28284460 303 -  71996105 I
e cerAty1.NW_012001495v1     1834024 307 -   2157725 I
e macNem1.NW_012011356v1     1955433 6921 -   2996164 I
e macFas5.chr4              28985380 308 - 170955103 I
e rheMac8.chr4              29324769 315 + 172585720 I

a score=2100.000000
s hg38.chr6_GL000254v2_alt    127718 1 +   4827813 g
s panTro5.chr6              29108844 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29343149 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5143370 1 +   6154872 g
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74144233 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s cebCap1.NW_016108108v1      199258 1 -    373274 G
i cebCap1.NW_016108108v1   C 0 I 1324
s otoGar3.GL873742           1513707 1 -   2232465 G
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25868534 1034 +  26524999 I
e saiBol1.JH378348            199637 1251 -    375362 I
e aotNan1.NW_018494050v1      137578 1314 -    285216 I
e calJac3.chr4             171373034 1216 - 171630274 I
e colAng1.NW_012115566v1     1842364 301 -   3067355 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I
e chlSab2.chr17             28284460 303 -  71996105 I
e cerAty1.NW_012001495v1     1834024 307 -   2157725 I
e macNem1.NW_012011356v1     1955433 6921 -   2996164 I
e macFas5.chr4              28985380 308 - 170955103 I
e rheMac8.chr4              29324769 315 + 172585720 I

a score=1365.000000
s hg38.chr6_GL000254v2_alt    127719 1 +   4827813 a
s panTro5.chr6              29108845 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29343150 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5143371 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74144234 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873742           1513708 1 -   2232465 A
i otoGar3.GL873742         C 0 I 1517
e canFam3.chr35             25868534 1034 +  26524999 I
e saiBol1.JH378348            199637 1251 -    375362 I
e aotNan1.NW_018494050v1      137578 1314 -    285216 I
e cebCap1.NW_016108108v1      199259 1324 -    373274 I
e calJac3.chr4             171373034 1216 - 171630274 I
e colAng1.NW_012115566v1     1842364 301 -   3067355 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I
e chlSab2.chr17             28284460 303 -  71996105 I
e cerAty1.NW_012001495v1     1834024 307 -   2157725 I
e macNem1.NW_012011356v1     1955433 6921 -   2996164 I
e macFas5.chr4              28985380 308 - 170955103 I
e rheMac8.chr4              29324769 315 + 172585720 I

a score=181653.000000
s hg38.chr6_GL000254v2_alt    127720 204 +   4827813 gaaaggcagtttcttaacagatagaaaacacgtgaaactggtggtcggtcacttcccaataagatctcaggagtggggagaaataacacaagatttaggaactatgccaacgtttacgaccccaggtctagaggtcaagccgtgcacttggtctctcaagtcgcctgcttggccctcttccaagtgtactttcc-----ttcattagtg
s panTro5.chr6              29108846 204 + 175400573 gaaaggcagtttcttaacagatagaaaacacgtgaaactggtggtcggtcacttcccaataagatctcaggagtggggagaaataacacaagatttaggaagtatgccaacgtttacgaccccaggtctagaggtcaagccgtgcacttggtctctcaagtcgcctgcttggccctcttccaaatgtactttcc-----ttcattagtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29343151 204 + 173848474 gaaaggcagtttcttaacagatagaaaacacgtgaaactggtggtcggtcacttcccaataagatctcaggagtggggagaaataacacaagatttaggaagtatgccaacgtttacgaccccaggtctagaggtcaagccgtgcacttggtctctcaagtcgcctgcttggccctcttccaaatgtactttcc-----ttcattagtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5143372 204 +   6154872 gaaaggcagtttcttaacagatagaaaacacgtgaaactggtggtcggtcacttcccaataagatctcaggagtggggagaaataacacaagatttaggaagtatgccaacgtttacgaccccaggtctagaggtcaagccgtgcacttggtctctcaagtcgcctgcttggccctcttccaagtgtactttcc-----ttcattagtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74144235 205 + 122973662 gaacggcagtttcttaac----agaaaacacgtgaaactggtggtcggtcacttcccaataagatctcaggagtggggagaaataacacaaggtttaggaagtataccaacgtttacgaccccaggtcaagaggtcaagccatgtacttggtctttcaagtcgcctgcttggccctcttccaagtgtactttccttcctttcattactg
i nomLeu3.chr1a            C 0 C 0
e canFam3.chr35             25868534 1034 +  26524999 I
e saiBol1.JH378348            199637 1251 -    375362 I
e otoGar3.GL873742           1513709 1517 -   2232465 I
e aotNan1.NW_018494050v1      137578 1314 -    285216 I
e cebCap1.NW_016108108v1      199259 1324 -    373274 I
e calJac3.chr4             171373034 1216 - 171630274 I
e colAng1.NW_012115566v1     1842364 301 -   3067355 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I
e chlSab2.chr17             28284460 303 -  71996105 I
e cerAty1.NW_012001495v1     1834024 307 -   2157725 I
e macNem1.NW_012011356v1     1955433 6921 -   2996164 I
e macFas5.chr4              28985380 308 - 170955103 I
e rheMac8.chr4              29324769 315 + 172585720 I

a score=705120.000000
s hg38.chr6_GL000254v2_alt    127924 152 +   4827813 ctctaaatattttcaataatttttcacccctgctctaagacttgcctcggtctctccttcggcattatgctcctcaatcgaattctttccttctcctgaggaggcaagaattaatgttgctgcagactccttacagataactgccaccgcta
s panTro5.chr6              29109050 152 + 175400573 ctctaaatattttcaataatttttcacccctggtctaagacttgcctcggtctctccttcggccttatgctcctcaatcgaattctttccttctcctgaggaggcaagaattaatgttgctgcagactccttacagataactgccaccgcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29343355 152 + 173848474 ctctaaatattttcaataatttttcacccctgctctaagacttgcctcggtctctccttcggccttatgctcctcaatcgaattatttccttctcctgaggaggcaagaattaatgttgctgcagactccttacagataactgccaccgcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5143576 152 +   6154872 ctctaaatattttcaataatttttcacccctgctctaagacttgcctcggtctctccttcggccttatgctcctcaatcgaattctttccttctcctgaggaggcaagaattaatgttgctgcagactccttacagataactgccaccgcta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74144440 152 + 122973662 ctctaaatcttttcaataatatttcacccctgctctaagacttgcctcggtctctccttcggccttatgaccctcaatcgaattctttccttctcctaaggaggcaagaattaaggttactgcagactccttacagataactgccaccgcta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29325084 151 + 172585720 ctctaaatctttttaataaactttcacccctgctctaagacttgccttggtctttccttcggccttatgcccctcaatcgaattctttcctcctcctgagaaggcaagaattaaagttgctgcagactccttacagatAA-TGCCACAGCTA
i rheMac8.chr4             I 315 C 0
s macFas5.chr4              28985688 151 - 170955103 ctctaaatctttttaataaactttcacccctgctctaagacttgccttggtctttccttcggccttatgcccctcaatcgaattctttcctcctcctgagaaggcaagaattaaagttgctgcagactccttacagatAA-TGCCACAGCTA
i macFas5.chr4             I 308 C 0
s macNem1.NW_012011356v1     1962354 151 -   2996164 ctctaaatctttttaataaactttcacccctgctctaagacttgccttggtctttccttcggccttatgcccctcaatcgaattctttcctcctcctgagaaggcaagaattaaagttgctgcagactccttacagatAA-TGCCACAGCTA
i macNem1.NW_012011356v1   I 6921 C 0
s cerAty1.NW_012001495v1     1834331 151 -   2157725 ctctaaatctttttaataaactttcacccctgctctaagacttgccttggtctttccttcggccttatgcccctcaatcgaattctttcctcctcctgagaaggcaagaattaaagttgctgcagactccttacagatAA-TGCCACAGCTA
i cerAty1.NW_012001495v1   I 307 C 0
s chlSab2.chr17             28284763 151 -  71996105 ctctaaatctttttaataaactttcacccctgctctaagacttgccttggtctttccttcggccttatgcccctcaatcgaattctttcctcctcctgagaaggcaagaattaaagttgctgcagactcctaacagataa-tgccacagcta
i chlSab2.chr17            I 303 C 0
s colAng1.NW_012115566v1     1842665 151 -   3067355 ctctaaatctttttaataaactttcacccctgctctaagacttgccttggtctttccttcggccttatgcccctcaatcgaattctttcttcctcctgagaaggcaagaattaaagttgctgcagactccttacagatAA-TGGCACAACTA
i colAng1.NW_012115566v1   I 301 C 0
e canFam3.chr35             25868534 1034 +  26524999 I
e saiBol1.JH378348            199637 1251 -    375362 I
e otoGar3.GL873742           1513709 1517 -   2232465 I
e aotNan1.NW_018494050v1      137578 1314 -    285216 I
e cebCap1.NW_016108108v1      199259 1324 -    373274 I
e calJac3.chr4             171373034 1216 - 171630274 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I

a score=853857.000000
s hg38.chr6_GL000254v2_alt    128076 175 +   4827813 ataTgttgagatgttcacacatgcatgtgtgaggcccttcaaaatgtgagctgcggttagaattgggaagagaagggagTGGGGATATGTATC------------------------------------TTTGTTTTCTGATTGCCTTCCATAT-----CTTTTAAAACTAGCTAA----GTGCTGCTTCAAGTCAGCCAGATACGAAGGCTTCAATTTA
s panTro5.chr6              29109202 175 + 175400573 ataTgttgagatgttcacacatgcatgtctgaggcccttcaaaatgtgagctgcggttagaattgggaagagaagggagTGGGGATATGTATC------------------------------------TTTGTTTTCTGATTCCCTTCCATAT-----CTTTTAAAACTAGCTAA----GTGCTGCTTCAAGTCAGCCAGATACGAAGGCTTCAATTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29343507 175 + 173848474 ataTgttgagatgttcacacatgcatgtctgaggcccttcaaaatgtgagctgcggttagaattgggaagagaagggagTGGGGATATGTATC------------------------------------TTTGTTTTCTGATTCCCTTCCATAT-----GTTTTAAAACTAGCTAA----GTGCTGCTTCAAGTCAGCCAGATACGAAGGCTTCAATTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5143728 175 +   6154872 ataTgttgagatgttcacacatgcatgtgtgaggcccttcaaaatatgagctgcggttagaattgggaagagaagggagTGGGGATATGTATC------------------------------------TTTGTTTTCTGATTCCCTTCCATAT-----CTTTTAAAACTAGCTAA----GTGCTGCTTCAAGTCAGCCAGATACGAAGGCTTCAATTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74144592 175 + 122973662 ataTgttgagatgttcacacatgcatgtgtgaggcccttcaaaatgtgagctgcggttagaattgggaagagaagggagTGGGGATGTGTATC------------------------------------TTTATTTTCTGATTCCCTTCCTTAT-----CTTTTAAAACTAGCTAA----GTGCTGCTTCAAGTTAGCCAAATATGAAGGCTTCAATTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29325235 176 + 172585720 ATATGTTGAGATGGTCACACATGCATGTGTGAGGCCCTTCAAAACGTGAGCTGCAGTTAGAATCGGGAAGAGAAGGGAGTGGGGATGTGTA----------------------------------------TATTTTCTGATTCCCTTCCTCATCTCATCTTTTAAAGCTAGCTAA----GTGCTGCTTCAAGTCAGCCAGACACGAAGGCTTCAATTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28985839 176 - 170955103 ATATGTTGAGATGGTCACACATGCATGTGTGAGGCCCTTCAAAACGTGAGCTGCAGTTAGAATCGGGAAGAGAAGGGAGTGGGGATGTGTA----------------------------------------TATTTTCTGATTCCCTTCCTCATCTCATCTTTTAAAGCTAGCTAA----GTGCTGCTTCAAGTCAGCCAGACACGAAGGCTTCAATTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1962505 176 -   2996164 ATATGTTGAGATGGTCACACATGCATGTGTGAGGCCCTTCAAAACGTGAGCTGCAGTTAGAATCGGGAAGAGAAGGGAGTGGGGATGTGTA----------------------------------------TATTTTCTGATTCCCTTCCTCATCTCATCTTTTAAAGCTAGCTAA----GTGCTGCTTCAAGTCAGCCAGACACGAAGGCTTCAATTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1834482 176 -   2157725 ATATGTTGAGATGGTCACACATGCATGTGTGAGGCCCTTCAAAACGTGAGCTGCAGTTAGAATCGGGAAGAGAAGGGAGTGGGGATGTGTA----------------------------------------TATTTTCTGATTCCCTTCCTCATCTCATCTTTTAAAGCTAGCTAA----GTGCTGCTTCAAGTCAGCCAGACACGAAGGCTTCAATTTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28284914 176 -  71996105 aTATGTTGAGATGGTCACACATGCATGTGTGAGGCCCTTCAAAATGTGAGCTGTAGTTAGAATCGGGAAGAGAAGGGAGTGGGGATGTGTA----------------------------------------TATTTTCTGATTCCCTTCCTCATCTCATCTTTTAAAGCTAGCTAA----GTGCTGCTTCAAGTCAGCCGGACACGAAGGCTTCAATTTA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1842816 176 -   3067355 ATATgttgagatggtcacacatgcatgtgtgaggcccttcaaaatgtgagctgcagttagaattgggaagagaagggagTGGGGATGTGTA----------------------------------------TATTTTCTGATTCCCTTCCTCATCTCAGCTTTTAAAACTAGCTAA----GTGCTGCTTCAAGTCAGCCAGACACGAAGGCTTCAGTTTA
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25869568 209 +  26524999 atatcttgagatattcatacacgcaggtacaaagcccttcaaaatgtgggatggag-------cagtaagaaaggagaatgggggT-TGTATCATTATCATAATGAAATATGAATAATGAAATATCATTATTATTTTCAGATTTCTCTCCTCGATGTATCTTTCAAAATTAGCCAAGCAGGTGCTCCTTCAAGTCACTCAGATAATGAGA---GAATTTA
i canFam3.chr35            I 1034 C 0
e saiBol1.JH378348            199637 1251 -    375362 I
e otoGar3.GL873742           1513709 1517 -   2232465 I
e aotNan1.NW_018494050v1      137578 1314 -    285216 I
e cebCap1.NW_016108108v1      199259 1324 -    373274 I
e calJac3.chr4             171373034 1216 - 171630274 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I

a score=630549.000000
s hg38.chr6_GL000254v2_alt    128251 115 +   4827813 TTTAACACAATAAAGAA-CTTCTATTTGGATCCAAAGCTTACATTATGCTTTAATAAAAGTTACCCT-AATAAA-GTCAGAA--------ACAATAACAATGAGTCAAAGAAATGCATACAAAGTA
s panTro5.chr6              29109377 115 + 175400573 TTTAACACAATAAAGAA-CTTCTATTTGGATCGAAAGCTTACATTATGCTTTAATAAAAGTTACCCT-AATAAA-GTCAGAA--------ACAATAACAATGAGTCAAAGAAATGCATACAAAGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29343682 115 + 173848474 TTTAACACAATAAAGAA-CTTCTATTTGGATCCAAAGCTTACATTATGCTTTAATAAAAGTTACCGT-AATAAA-GTCAGAA--------ACAATAACAATGAGTCAAAGAAATGCATACAAAGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5143903 115 +   6154872 TTTAACACAATAAAGAA-CTTCTATTTGGATCCAAAGCTTACATTATGCTTTAATAAAAGTTACCCT-AATAAA-GTCAGAA--------ACAATAACAATGAGTCAAAGAAATGCATACAAAGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74144767 116 + 122973662 TTTAACACAATAAAGAA-TTTATATTTGAATCCAAAGCTTATATTTTGCTTTAATAAAAGTTAACCTAAATAAA-GTCAGAA--------ACAATAACAACGAGTCAAAGAAATGCATACAAAGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29325411 115 + 172585720 TTTAACACAATAAATAA-TATCTATTTGGATCCAAAGCTTACATTATGCTCTAATAAATGTTACCCT-AAAAAA-GTCAGAA--------ACAATAACAATGAGTCAATGAAATGCATACAAAGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28986015 115 - 170955103 TTTAACACAATAAATAA-TTTCTATTTGGATCCAAAGCTTACATTATGCTCTAATAAATGTTACCCT-AAAAAA-GTCAGAA--------ACAATAACAATGAGTCAATGAAATGCATACAAAGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1962681 115 -   2996164 TTTAACACAATAAATAA-TTTCTATTTGGATCCAAAGCTTACATTATGCTCTAATAAATGTTACCCT-AAAAAA-GTCAGAA--------ACAATAACAATGAGTCAATGAAATGCATACAAAGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1834658 115 -   2157725 TTTAACACAATAAATAA-TTTCTATTTGGATCCAAAGCTTACATTATGCTCTAATAGATGTTACCCT-AAAAAA-GTCAGAA--------ACAATAACAATGAGTCAATGAAATGCATACAAAGTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28285090 115 -  71996105 TTTAACACAATAAATAA-TTTCTATTTGGATCCAAAGCTTACATTATGCTCTAATAAATGTTACCCT-AAAAAA-GTCAGAA--------ACAATAACAATGAGTCAATGAAATGCATACAAAGTA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1842992 115 -   3067355 TTTAACACAATAAATAA-TTTCTATTTGGATCCAAAGCTTACATTATGCTTTAATAAATGTTACCCT-TAAAAA-GTCAGAA--------ACAGTAACAATGAGTCAATGAAATGCATACAAAGTA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1515226 108 -   2232465 TTTAACACAATAAAGAA-CTTTTGCCTAAATCCAAAGCTTACAGTATA----AAAAAAAATTACCCT----AAA-GTCAGGA--------ACAATAATAATGAGTCAAAGAAATGCATATAAAGTA
i otoGar3.GL873742         I 1517 C 0
s canFam3.chr35             25869777 111 +  26524999 TGTAACACAACAAAGAACTTTTTATCTAGATCCGAAGCTTACTTTACGTTTTAA---AAGTTCCTgt-aagaaatatcagaaagggagacagaacatgaaagactctgggaaacg-----------
i canFam3.chr35            C 0 C 0
e saiBol1.JH378348            199637 1251 -    375362 I
e aotNan1.NW_018494050v1      137578 1314 -    285216 I
e cebCap1.NW_016108108v1      199259 1324 -    373274 I
e calJac3.chr4             171373034 1216 - 171630274 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I

a score=75077.000000
s hg38.chr6_GL000254v2_alt    128366 15 +   4827813 ggccaggcgtggtgg
s panTro5.chr6              29109492 15 + 175400573 ggccaggcgtggtgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29343797 15 + 173848474 ggccaggcgtggtgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5144018 15 +   6154872 ggccaggcgtggtgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74144883 15 + 122973662 ggcagggcgtggttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29325526 15 + 172585720 TGTCAGGCGTGGTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28986130 15 - 170955103 GGTCAGGCGTGGTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1962796 15 -   2996164 ggtcaggcgtggtgg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1834773 15 -   2157725 GATcgggcgtggtgg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28285205 15 -  71996105 ggtcgggcgtggtgg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1843107 15 -   3067355 ggccgggcgtggtgg
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25869888 15 +  26524999 agctaggggtggtgg
i canFam3.chr35            C 0 I 13
e saiBol1.JH378348            199637 1251 -    375362 I
e otoGar3.GL873742           1515334  0 -   2232465 C
e aotNan1.NW_018494050v1      137578 1314 -    285216 I
e cebCap1.NW_016108108v1      199259 1324 -    373274 I
e calJac3.chr4             171373034 1216 - 171630274 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I

a score=10505.000000
s hg38.chr6_GL000254v2_alt    128381 2 +   4827813 ct
s panTro5.chr6              29109507 2 + 175400573 ct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29343812 2 + 173848474 ct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5144033 2 +   6154872 ct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74144898 2 + 122973662 ct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29325541 2 + 172585720 CT
i rheMac8.chr4             C 0 I 15
s macFas5.chr4              28986145 2 - 170955103 CT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1962811 2 -   2996164 ct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1834788 2 -   2157725 ct
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28285220 2 -  71996105 ct
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1843122 2 -   3067355 ct
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25869903 13 +  26524999 I
e saiBol1.JH378348            199637 1251 -    375362 I
e otoGar3.GL873742           1515334 0 -   2232465 C
e aotNan1.NW_018494050v1      137578 1314 -    285216 I
e cebCap1.NW_016108108v1      199259 1324 -    373274 I
e calJac3.chr4             171373034 1216 - 171630274 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I

a score=6570.000000
s hg38.chr6_GL000254v2_alt    128383 2 +   4827813 ca
s panTro5.chr6              29109509 2 + 175400573 ca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29343814 2 + 173848474 ca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5144035 2 +   6154872 ca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74144900 2 + 122973662 ca
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28986147 2 - 170955103 GA
i macFas5.chr4             C 0 I 10
s macNem1.NW_012011356v1     1962813 2 -   2996164 ca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1834790 2 -   2157725 ca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28285222 2 -  71996105 ca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1843124 2 -   3067355 ca
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25869903 13 +  26524999 I
e saiBol1.JH378348            199637 1251 -    375362 I
e otoGar3.GL873742           1515334 0 -   2232465 C
e aotNan1.NW_018494050v1      137578 1314 -    285216 I
e cebCap1.NW_016108108v1      199259 1324 -    373274 I
e calJac3.chr4             171373034 1216 - 171630274 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I
e rheMac8.chr4              29325543 15 + 172585720 I

a score=63224.000000
s hg38.chr6_GL000254v2_alt    128385 21 +   4827813 cgcctggaatcccggcacttt
s panTro5.chr6              29109511 21 + 175400573 cgcctggaatcccggcacttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29343816 21 + 173848474 cgcctggaatcccggcacttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5144037 21 +   6154872 cgcctggaatcccggcacttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74144902 21 + 122973662 cgcctggaatcccggcgcttt
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012011356v1     1962815 21 -   2996164 cgcctgtaatcccagcacttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1834792 21 -   2157725 cgcctgtaatcccagcacttt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28285224 21 -  71996105 cgcctgtaatcccagcacttt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1843126 21 -   3067355 cgcctgtaatcccaccacttt
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25869903 13 +  26524999 I
e saiBol1.JH378348            199637 1251 -    375362 I
e otoGar3.GL873742           1515334  0 -   2232465 C
e aotNan1.NW_018494050v1      137578 1314 -    285216 I
e cebCap1.NW_016108108v1      199259 1324 -    373274 I
e calJac3.chr4             171373034 1216 - 171630274 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I
e macFas5.chr4              28986149 10 - 170955103 I
e rheMac8.chr4              29325543 15 + 172585720 I

a score=229652.000000
s hg38.chr6_GL000254v2_alt    128406 105 +   4827813 aggaggcagaggc--gggtggatc-----------gtggatcacttgagttcaggagttc--gagaccagcctg---gccaacatggtg-aaacccccgtttccacta----------aaaaaaaaaaaa------------ttag
s panTro5.chr6              29109532 106 + 175400573 aggaggcagaggc--gggtggatc-----------gtggatcacttgagttcaggagttc--gagaccagcctg---gccaacatggtg-aaacccccgtttccacta----------aaaaaaaaaaaa-----------attag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29343837 105 + 173848474 aggaggcagaggc--gggtggatc-----------gtggatcacttgagttcaggagttc--gagaccagcctg---gccaacatggtg-aaacccccgtttccacta----------aaaaaaaaaaaa------------ttag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5144058 118 +   6154872 aggaggcagaggc--gggtggatc-----------gtggatcacttgagttcaggagttc--gagaccagcctg---gccaacatggtgaaaacccccgtttccacta----------aaaaaaaaaaaaaaaaaaaaaaaattag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74144923 103 + 122973662 agaaggcgggggaggggggggggg-----------gtggttcacttgaggtcaggggttc--gagaccagcctg---gccaacgtggtg-aaacccccgtctccacta----------aagaaaaa----------------ttag
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012011356v1     1962836 109 -   2996164 gggaggccga-gc--gggtgga-------------------cacttgaagtcaggagttc--gagaccagcctg---gccaatatggt--gaagccccgtctccactgaaaaaaaaaaaaaaaaaaaaaa--------aaaattag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1834813 104 -   2157725 gggaggccgaggt--gggtgga------------------tcacttgaagtcaggagttc--gagaccagcctg---gccaatatggtg-gaagccccgtctccactg--------aaaaaaaaaaaaaa--------aaaattag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28285245 102 -  71996105 gggaggccgaggc--gggtgga------------------tcacttgaagtcaggagttc--gagaccagcctg---gccaatatggtg-gaagccccgtctccactg----------aaaaaaaaaaaa--------aaaattag
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1843147 102 -   3067355 gggaggccgaggt--gggtgga------------------tcacttgaagtcaggagtcc--gagaccagcctg---accaatatggtg-gaaaccccgcctccactg----------aaaaaaaaaaaa--------aaaattag
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25869916 110 +  26524999 agggggtgggggt--gaatgggtgacgggcactgaggggggcacttgaggggatgagcactgggtgttattctgtatgttggcaaattg-aa-----------cacca----------acaaaaaataaa------------ttca
i canFam3.chr35            I 13 I 364
e saiBol1.JH378348            199637 1251 -    375362 I
e otoGar3.GL873742           1515334   0 -   2232465 C
e aotNan1.NW_018494050v1      137578 1314 -    285216 I
e cebCap1.NW_016108108v1      199259 1324 -    373274 I
e calJac3.chr4             171373034 1216 - 171630274 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I
e macFas5.chr4              28986149  10 - 170955103 I
e rheMac8.chr4              29325543  15 + 172585720 I

a score=181580.000000
s hg38.chr6_GL000254v2_alt    128511 68 +   4827813 ccgggcatggtggtgcatcatgcctgtaattccagctactcgggaggctaaggcaggagaatcacttg
s panTro5.chr6              29109638 68 + 175400573 ccgggcatggtggtgcatcatgcctgtaattccagctactcgggaggctaaggcaggagaatcacttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29343942 68 + 173848474 ccgggcatggtggtgcatcatgcctgtaattccagctactcgggaggctaaggcaggagaatcacttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5144176 68 +   6154872 ccgggcatggtggtgcatcatgcctgtaattccagctactcgggaggctaaggcaggaaaatcacttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74145026 65 + 122973662 ccgggcatggtggtg---catgcctgtaattccagctactcgggaggctaaggcaggagaatcacttg
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012011356v1     1962945 63 -   2996164 ccggacagggtggcg---cacacctgtaatccc-gctactcgggaggctaaggaagga-aatcgcttg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1834917 65 -   2157725 ccggacggggtggcg---cacacctgtaatcccagctactcgggaggctaaggcaggagaatcgcttg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28285347 65 -  71996105 ccagacagggtggcg---cacacctgtaatcccagctactcgggaggctaaggcaggagaatcgcttg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1843249 65 -   3067355 cccgacagggtggtg---cacacctgtaatcccagctactggggaggctaaggcaggagaatcgcttg
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25870026 364 +  26524999 I
e saiBol1.JH378348            199637 1251 -    375362 I
e otoGar3.GL873742           1515334  0 -   2232465 C
e aotNan1.NW_018494050v1      137578 1314 -    285216 I
e cebCap1.NW_016108108v1      199259 1324 -    373274 I
e calJac3.chr4             171373034 1216 - 171630274 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I
e macFas5.chr4              28986149 10 - 170955103 I
e rheMac8.chr4              29325543 15 + 172585720 I

a score=8935.000000
s hg38.chr6_GL000254v2_alt    128579 3 +   4827813 cat
s panTro5.chr6              29109706 3 + 175400573 cac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29344010 3 + 173848474 cac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5144244 3 +   6154872 cac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74145091 3 + 122973662 cgg
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28986159 3 - 170955103 Cac
i macFas5.chr4             I 10 C 0
s macNem1.NW_012011356v1     1963008 3 -   2996164 cac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1834982 3 -   2157725 cac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28285412 3 -  71996105 cac
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1843314 3 -   3067355 cac
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25870026 364 +  26524999 I
e saiBol1.JH378348            199637 1251 -    375362 I
e otoGar3.GL873742           1515334 0 -   2232465 C
e aotNan1.NW_018494050v1      137578 1314 -    285216 I
e cebCap1.NW_016108108v1      199259 1324 -    373274 I
e calJac3.chr4             171373034 1216 - 171630274 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I
e rheMac8.chr4              29325543 15 + 172585720 I

a score=157082.000000
s hg38.chr6_GL000254v2_alt    128582 35 +   4827813 ctgggaggcacagcttgcacgtgaaccgagatggt
s panTro5.chr6              29109709 35 + 175400573 ctgggaggcacagcttgcacgtgaaccgagatggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29344013 35 + 173848474 ctgggaggcacagcttgcacgtgaaccgagatggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5144247 35 +   6154872 ctgggaggcacagcttgcacgtgaaccgagatggt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74145094 35 + 122973662 gtgggaggcagagattgcacgtgaaccgagatggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29325558 35 + 172585720 ctggaaggcagagattgcacgtgaaccgagattgc
i rheMac8.chr4             I 15 C 0
s macFas5.chr4              28986162 35 - 170955103 ctggaaggcagagattgcacgtgaaccgagattgc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1963011 35 -   2996164 ctgggaggcagagattgcacgtgaaccgagattgc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1834985 35 -   2157725 ctgagaggcagagattgcacgtgaaccgagattgc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28285415 35 -  71996105 ctgggaggcagagattgcacgtgaaccgagattgc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1843317 35 -   3067355 ctgggaggcagagattgcacgtgaaccgagattgt
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25870026 364 +  26524999 I
e saiBol1.JH378348            199637 1251 -    375362 I
e otoGar3.GL873742           1515334  0 -   2232465 C
e aotNan1.NW_018494050v1      137578 1314 -    285216 I
e cebCap1.NW_016108108v1      199259 1324 -    373274 I
e calJac3.chr4             171373034 1216 - 171630274 I
e manLeu1.NW_012104165v1     1962503 862 +   2316924 I

a score=397711.000000
s hg38.chr6_GL000254v2_alt    128617  91 +   4827813 gccattgcactctgcactccagcctgggagacagagtgagactcttgtctccaaaaaaaaaaaaaaaa------------GCCTACAAAAAGCTTACAAAGTC
s panTro5.chr6              29109744  84 + 175400573 gccattgcactctgcactccagcctgggaagcagagtgagactct-gtctccaaaaaaaaaaaaaaaa------------------aaaaaGCCTACAAAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29344048  82 + 173848474 gccattgcactctgcactccagcctgggaggcagagtgagactcc-gtctccaaaaaaaaaaaaaa--------------------aaaaGACCTACAAAGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5144282  86 +   6154872 gccattgcactctgcactcctgcctgggagacagagtgagactct-gtctccaaaaaaaaaaaaaaaa------------aa----aaaaCGCCTACAAAGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74145129  80 + 122973662 gccattgcactctgcactccagcctgggagac--agtgagactct-gtctccaaaaaaaaaaaaaa--------------------aGGGGGCCTACAAAGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29325593 102 + 172585720 gccattgcactctgcactccagcctgggcgacagggtgagacact-gtttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGCATAAAAGGCATACAAAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28986197 102 - 170955103 gccattgcactctgcactccagcctgggcgacagggtgagaccct-gtttccaaaaaaaaaaaaaaaaaaaaaaaaaaaTAGGCATAAAAGGCATACAAAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1963046  91 -   2996164 gccattgcactctgcact-cagcctgggcgaca-ggtgagaccct-gtttccaaaaaaaaaaaaaaaaaaa---------aGGCATAAAAGGCATACAAAGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1835020  94 -   2157725 gccattgcactctgcactccagcctgggcgacagggtgagaccct-gtttcaaaaaaaaaaaaaaaaaaaaa--------aGGCATAAAAGGCATACAAAGTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28285450  88 -  71996105 gccattgcactctgcactccagcctgggcgacagggtgagaccct-gtttccaaaaaaaaaaaaaa--------------aGGCATAAAAGGCATACAAAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1963365  87 +   2316924 GCCattgcactctgcactccagcctgggcgacagggtgagaccct-gtttcc-aaaaaaaaaaaaa--------------aGGCATAAAAGGCATACAAAGTC
i manLeu1.NW_012104165v1   I 862 C 0
s colAng1.NW_012115566v1     1843352  87 -   3067355 gccattgcactctgcactccagcctgggtgacagggtgagaccct-gtttccaaaaaaaaaaaaa---------------aGGCATAAAAGGCATACAAAGTC
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25870026 364 +  26524999 I
e saiBol1.JH378348            199637 1251 -    375362 I
e otoGar3.GL873742           1515334   0 -   2232465 C
e aotNan1.NW_018494050v1      137578 1314 -    285216 I
e cebCap1.NW_016108108v1      199259 1324 -    373274 I
e calJac3.chr4             171373034 1216 - 171630274 I

a score=327358.000000
s hg38.chr6_GL000254v2_alt    128708 73 +   4827813 TAAAATCGGACGAACAAG-AGGACA-CCTGATGGG--GGAAAAGAAAA-------GAGATTGCGATGGGAAGAGAGTGGTGGGG
s panTro5.chr6              29109828 73 + 175400573 TAAAATCGGAAGAACAAG-AGGACA-CCTGATGGG--GGAAAAGAAAA-------GAGATTGCGATGGGAAGAGAGTGGTGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29344130 73 + 173848474 TAAAATCGGAAGAACAAG-AGGACA-CCTGATGGG--GGAAAAGAAAA-------GAGATTGCGATGGGAAGAGAGTGGTGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5144368 72 +   6154872 TAAAATCGGAGGAACAAG-AGGACA-CCTGATGGG--GGAAAAGAAAA-------GAGATTGCGATGGGAAGAGAGTGGT-GGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74145209 76 + 122973662 TAAAATCG---GAACAAG-A-GACA-CCTGATGGG--GGAAAAAGAAAAAAGGAGGAAACTACGATGGGAAGAGAGTGGTGGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29325695 75 + 172585720 TAAAATCGGAGGAACAAG-A-GACA-ACTGATGG---GGGGGAAAAAA-ACGGAGGAGACTGCGATGGGA--AGAGTGGTGGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28986299 75 - 170955103 TAAAATCGGAGGAACAAG-A-GACA-ACTGATGG---GGGAAAAAAAA-ACGGAGGAGACTGCGATGGGA--AGAGTGGTGGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1963137 80 -   2996164 TAAAATCGGAGGAACAAGAA-GACACACTGATGGGCCGCAACAAAGAA-ACAGAGGAGACTGCGATGGGA--AGAGTGGTGGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1835114 76 -   2157725 TAAAATCGGAGGAACAAG-A-GACA-ACTGATGGG--GGAAAAGAAAA-ACGGAGGAGATTGCGATGGGA--AGAGTGGTGGGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28285538 73 -  71996105 TAAAATCGGAGGAACAAG-A-G----ACTGATGGG--GGAAAAGAAAA-ACAGAAGAGATTGCAATAGGA--AGAGTGGTGGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1963452 76 +   2316924 TAAAATCGGAGGAACAAG-A-GACA-ACTGATGGG--GGAAAAGAAAA-ACGGAGGAGATTGCGATGGGA--AGAGTGGTGGGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1843439 78 -   3067355 TAAAATCGGAGGAACAAG-A-GACA-ACTGATGGG--GGAAAAGAAAA-AAGGAGGAGATTGCGATGGGAAGAGAGTGGTGGGG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1515334 69 -   2232465 TTAAAATGGAGGGAGGAG-ACGGAA-ACAGAATAG--ACAAAGAAAGA------GGCG-----GATGGAAAGAGAGTGCTGGGG
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870026 364 +  26524999 I
e saiBol1.JH378348            199637 1251 -    375362 I
e aotNan1.NW_018494050v1      137578 1314 -    285216 I
e cebCap1.NW_016108108v1      199259 1324 -    373274 I
e calJac3.chr4             171373034 1216 - 171630274 I

a score=54006.000000
s hg38.chr6_GL000254v2_alt    128781 7 +   4827813 AAATCCG
s panTro5.chr6              29109901 7 + 175400573 AAATCCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29344203 7 + 173848474 AAATCCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5144440 7 +   6154872 AAATCCG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74145285 7 + 122973662 AAATCCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29325770 7 + 172585720 AAATCCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28986374 7 - 170955103 AAATCCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1963217 7 -   2996164 AAATCCG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1835190 7 -   2157725 AAATCCG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28285611 7 -  71996105 AAATCCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1963528 7 +   2316924 AAATCCG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1843517 7 -   3067355 AAATCCG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171374250 6 - 171630274 AAATCC-
i calJac3.chr4             I 1216 C 0
s saiBol1.JH378348            200888 6 -    375362 AAATCC-
i saiBol1.JH378348         I 1251 C 0
s otoGar3.GL873742           1515403 7 -   2232465 AAATCTG
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870026 364 +  26524999 I
e aotNan1.NW_018494050v1      137578 1314 -    285216 I
e cebCap1.NW_016108108v1      199259 1324 -    373274 I

a score=8281.000000
s hg38.chr6_GL000254v2_alt    128788 1 +   4827813 T
s panTro5.chr6              29109908 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29344210 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5144447 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74145292 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29325777 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28986381 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1963224 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1835197 1 -   2157725 T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28285618 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1963535 1 +   2316924 T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1843524 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      200583 1 -    373274 T
i cebCap1.NW_016108108v1   I 1324 C 0
s otoGar3.GL873742           1515410 1 -   2232465 T
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870026 364 +  26524999 I
e saiBol1.JH378348            200894 0 -    375362 C
e aotNan1.NW_018494050v1      137578 1314 -    285216 I
e calJac3.chr4             171374256 0 - 171630274 C

a score=406941.000000
s hg38.chr6_GL000254v2_alt    128789 40 +   4827813 -GGGACAGTTTTCCTATTTTCTGGGTCTGTCCCTTGACCAA
s panTro5.chr6              29109909 40 + 175400573 -GGGACAGTTTTCCTATTTTCTGGGTCTGTCCCTTGACCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29344211 40 + 173848474 -GGGACAGTTTTCCTATTTTCTGGGTCTGTCCCTTGACCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5144448 40 +   6154872 -GGGAGAGTTTTCCTATTTTCTGGGTCTGTCCCTTGACCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74145293 40 + 122973662 -GGCACAGTTTTCCTATTCTCTGGGTCTGTCCCTTGACCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29325778 40 + 172585720 -GGGACAGTTTTCTTATTCTCTGGGTCTGTCCCTTGACCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28986382 40 - 170955103 -GGGACAGTTTTCTTATTCTCTGGGTCTGTCCCTTGACCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1963225 40 -   2996164 -GGGACAGTTTTCTTATTCTCTGGGTCTGTCCCTTGACCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1835198 40 -   2157725 -GGGACAGTTTTCTTATTCTCTGGGTCTGTCCCTTGACCAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28285619 40 -  71996105 -GGGACAGTTTTCTTATTCTCTGGGTCTGTCCCTTGACCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1963536 40 +   2316924 -GGGACAGTTTTCTTATTCTCTGGGTCTGTCCCTTGACCAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1843525 40 -   3067355 -GGGACAGTTTTCAAACTCTCTGGGTCTGTCCCTTGACCAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171374256 40 - 171630274 -GGGTCAGTTTTTCTGTCCTCTGGGTCTGTCCCTTGATCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            200894 40 -    375362 -GGGACATTTTTTCCATCCTCTGGGTCTGTCCTTTGATCAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      200584 40 -    373274 -GGGACAGTTTTTCTGTCCTCTGGGTCTGTCCCTTGGTCAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      138892 40 -    285216 -GGGACAGTTTTTCTATCCTCTGGGTCTGTCCCTTGATCAA
i aotNan1.NW_018494050v1   I 1314 C 0
s otoGar3.GL873742           1515411 30 -   2232465 GGGGACAATTTTCCTCTCTT----GTCTGTCCCA-------
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870026 364 +  26524999 I

a score=1539035.000000
s hg38.chr6_GL000254v2_alt    128829 177 +   4827813 GGAACAGCTC-AAAAAAGAAAGGATCTAAAATAAATTGTAAAAAATTACCTGTG-GTTTCGCATTTGTTTT-----CTGTCTTTTTCTTTCT---TGCTTGATCTTCGATAATACTGGGAAATGT----AACCAATGTGATTGGGCTTGTTAATTTGGTGCCTTGCTTGTTTTTCGGGTTTTGGAATTCTG------
s panTro5.chr6              29109949 173 + 175400573 GGAACAGCTC-AAAAAAGAAAGGATCTAAAAT----CGTAAAAAATTACCTGTG-GTTTCGCATTTGTTTT-----CTGTCTTTTTCTTTCT---TGCTTGATCTTCGATAATACTGGGAAATGT----AACCAATGTGATTGGGCTTGTTAATTTGGTGCCTTGCTTGTTTTTCGGGTTTTGGAATTCTG------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29344251 177 + 173848474 GGAACAGCTC-AAAAAAGAAAGGATCTAAAATAAATCGTAAAAAATTACCTGTG-GTTTCGCATTTGTTTT-----CTGTCTTTTTCTTTCT---TGCTTGATCTTCGATAATACTGGGAAATGT----AACCAATGTGATTGGGCTTGTTAATTTGGTGCCTTGCTTGTTTTTCGGGTTTTGGAATTCTG------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5144488 177 +   6154872 GGAACAGCTC-AAAAAAGAAAGGATCTAAAATAAATTGTAAAAAATTACCTGTG-GTTTCGCATTTGTTTT-----CTGTCTTTTTCTTTCT---TGCTTGATCTTCGATAATACTGGGAAATGT----AACCAATGTGATTGGGCTTGTTAATTTGGTGCCTTGCTTGTTTTTCGGGTTTTGGAATTCTG------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74145333 169 + 122973662 GGAACAGCTC-AAAAAAGAAGGGATCTAAAAT----TTTAAAAAATTACCTATG-GTTTCGCATTTGCTT---------TCTTTTTCTTTCT---TGCTTGATCTTCGATAATACTGGGAAATGT----AACCAATGTGATTGGGCTTGTTAATTTGATGCCTTGCTTGTTTTTCGGGATTTGGAATTCTG------
i nomLeu3.chr1a            C 0 I 2
s rheMac8.chr4              29325818 161 + 172585720 GGAACAGCTCAAAAAAAGAAGAGATCTGA----------AGAAAATTATCTGTG-GTTTC-------TTTT-----CTGTCTTTTTGTTTCT---TGCTTGCTCTTCCAGAATACTGGGAATTGT----AAGCAATGTGATTGGGCTTGTTAATTTGGTGCCTTGTTTGTTTTTCGGGTTTTGGAATTCTG------
i rheMac8.chr4             C 0 I 2
s macFas5.chr4              28986422 161 - 170955103 GGAACAGCTCAAAAAAAGAAGAGATCTGA----------AGAAAATTATCTGTG-GTTTC-------TTTT-----CTGTCTTTTTGTTTCT---TGCTTGCTCTTCCAGAATACTGGGAATTGT----AAGCAATGTGATTGGGCTTGTTAATTTGGTGCCTTGTTTGTTTTTCGGGTTTTGGAATTCTG------
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1     1963265 161 -   2996164 GGAACAGCTCAAAAAAAGAAGAGATCTGA----------AGAAAATTATCTGTG-GTTTC-------TTTT-----CTGTCTTTTTGTTTCT---TGCTTGCTCTTCCAGAATACTGGGAATTGT----AACCAATGTGATTGGGCTTGTTAATTTGGTGCCTTGTTTGTTTTTCGGGTTTTGGAATTCTG------
i macNem1.NW_012011356v1   C 0 I 2
s cerAty1.NW_012001495v1     1835238 160 -   2157725 GGAACAGCTC-AAAAAAGAAGAGATCTGA----------AGAAAATTATCTGTG-Gtttc-------tttt-----ctgtctttttctttct---tgcttgctcttcCAGAATACTGGGAATTGT----AACCAATGTGATTGGGCTTGTTAATTTGGTGCCTTGTTTGTTTTTCGGGTTTTGGAATTCTG------
i cerAty1.NW_012001495v1   C 0 I 2
s chlSab2.chr17             28285659 160 -  71996105 GGAACAGCTC-AAAAAAGAAGAGATCTGA----------AGAAAATTATCTGTG-Gtttc-------tttt-----ctgtctttttctttct---tgcttgctcttcCAGAATTCTGGGAATTGT----AACCAATGTGATTGGGCTTGTTAATTTGGTGCCTTGTTTGTTTTTCGGGTTTTGGAATTCTG------
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012104165v1     1963576 160 +   2316924 GGAACAGCTC-AAAAAAGAAGAGATCTGA----------AGAAAATTATCTGTG-Gtttc-------tttt-----ctgtctttttctttct---tgcttgctcttcCAGAATACTGGGAATTGT----AACCAATGTGATTGGGCTTGTTAATTTGGTGCCTTGTTTGTTTTTCGGGTTTTGGAATTCTG------
i manLeu1.NW_012104165v1   C 0 I 2
s colAng1.NW_012115566v1     1843565 167 -   3067355 GGAACAGCTC-AAAAAAGAAGGGATCTGA----------AGAAAATGATCTGTG-GTTTCGCATTTGTTTT-----CTGTCTTTTTCTTTCT---TGCTTACTCTTCCAAAATACTGGGAATTGT----AACCAATGTGATTGGGCTTGTTGATTTGGTGCCTTGTTTGTTTTTCGGGTTTTGGAATTCTG------
i colAng1.NW_012115566v1   C 0 I 2
s calJac3.chr4             171374296 166 - 171630274 GGAAGAGCTC-AGGAAAGCAGGGGTCTAA----------AGAAAAT-ACCTGTG-GTTTCGCGTTGGTTTT-----CGGTCTTTTTCTTTCT---TGCTTGCTCTTAGATAATACTGGGAAATGT----AACCAATGTGATTGGGCTTGTTAACTTGGTGACTTGCTTGTTTTTCCGCTTTTGGAATTCTG------
i calJac3.chr4             C 0 I 2
s saiBol1.JH378348            200934 166 -    375362 GGAAGAGCTC-AAGAAAGAAGGGATCTAA----------AGAAAAT-ACCTGTA-GTTTCGCATTTGTTTT-----TGGTCTTTTTCTTTCT---TGCTTGCTCTTCGATAATACTGGGAAATGT----AACCAATGTGATTAGGCTTGTTAGCTTGGTGACTTGCTTGTTTTTCGGCTTTTGGAATTCTG------
i saiBol1.JH378348         C 0 I 2
s cebCap1.NW_016108108v1      200624 166 -    373274 GGAAGAGCTC-AAGAAAGAAGGAATCTAA----------AGAAAAT-ACCTATG-GTTTCGCGTTTGATTT-----CGGTCTTTTTCTTTCT---TGCTTGCTCTTTGATAATACTGGGAAATGT----AGCCAATGTGATTAGGCTTGTTAGCTTGGTGACTTGCTTGTTTTTCGGCTTTTGGAATTCTG------
i cebCap1.NW_016108108v1   C 0 I 2
s aotNan1.NW_018494050v1      138932 165 -    285216 GGAAGAGCT--AAGAAAGAAGGGATCTAA----------AGAAAAT-ACCTGTG-GTTTCGCGTTTGTTTT-----CGGTCTTTTTCTTTCT---TGCTTGCTCTTCGATAGTACTGGGAAATGT----AACCAATGTGATTGGGCTTATTAACTTGGTGACTTGCTTGTTTTTCGGCTTTTGGAATTCTG------
i aotNan1.NW_018494050v1   C 0 I 2
s otoGar3.GL873742           1515441 141 -   2232465 -----------GAAAAAGAA----TGTAA----------AGAAAATTTATTGTG-GATT--------TTGC-----ACTTTTTTTTCTGTGT---TTCTTACTTTTCAGTAATACTGAGAAATGT----AACCAGTGTGATTAGGCTTGTTAATTTGGTGCCTTATTTA----TCCAACTCTGGAATCCTG------
i otoGar3.GL873742         C 0 I 92
s canFam3.chr35             25870390 166 +  26524999 GGGACAGCTC-----------CGACCGGA------------------GCCTGTGCGCTGCGCCCCTGCTTTTCTTGCCGACTCTTACCCTCTGTGCGTCTTCTCTTCGGTGATAGCGCGGAATGTTTGAAACCGCTG-GGGTGCGCTGGGCACCTCCGTG-CGTGCTGATCCTCGGGGTCGGGGAATCCTCCAGGAG
i canFam3.chr35            I 364 C 0

a score=548981.000000
s hg38.chr6_GL000254v2_alt    129006 61 +   4827813 CCAGTCTGTGCTTCCGCGGCCTCTTTCATTTTGTCTTTCA--TCTCTTGACACAGCCACCCAG
s panTro5.chr6              29110122 61 + 175400573 CCAGTGTGTGCTTCCGCGGCCTCTTTCATTTTGTCTTTCG--TCTCTTGACACAGCCACCCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29344428 61 + 173848474 CCAGTCTGTGCTTCCGCGGCCTCTTTCATTTTGTCTTTCG--TCTCTTGACACAGCCACCCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5144665 62 +   6154872 CCAGTCTGTGCTTCCCCGGCCTCTTTCA-TTTGTCTTTCGTCTCTCTTGACACAGCCACCCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74145504 61 + 122973662 CCAGTCTGTGCTTCCCTGGCCTCTTTCGTTTTGTCTTTCG--TCTCTTGACACAGCCACCCAG
i nomLeu3.chr1a            I 2 C 0
s rheMac8.chr4              29325981 61 + 172585720 CCAGTCTGTGCTTCCCCAGCCTCTTTCATTTTGTCTTTCG--TCTCCTGACACAGCCACCCAG
i rheMac8.chr4             I 2 C 0
s macFas5.chr4              28986585 61 - 170955103 CCAGTCTGTGCTTCCCCAGCCTCTTTCATTTTGTCTTTCG--TCTCCTGACACAGCCACCCAG
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1     1963428 61 -   2996164 CCAGTCTGTGCTTCCCCAGCCTCTTTCATTTTGTCTTTCG--TCTCCTGACACAGCCACCCAG
i macNem1.NW_012011356v1   I 2 C 0
s cerAty1.NW_012001495v1     1835400 61 -   2157725 CCAGTCTGTGCTTCCCCAGCCTCTTTCATTTTGTCTTTCG--TCTCCTGACACAGCCACCGAG
i cerAty1.NW_012001495v1   I 2 C 0
s chlSab2.chr17             28285821 61 -  71996105 CCAGTCTGTGCTTCCCCAGCCTCTTTCATTTTGTCTTTCG--TCTCCTGACACAGCCACCCAG
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012104165v1     1963738 61 +   2316924 CCAGTCTGTGCTTCCCCAGCCTCTTTCATTTTGTCTTTCG--TCTCCTGACACAGCCACCGAG
i manLeu1.NW_012104165v1   I 2 C 0
s colAng1.NW_012115566v1     1843734 61 -   3067355 CCAGTCTGTGCTTCCCCAGCCTCTTTCATTTTGTCTTTCG--TCTCCTGACACAACCACCCAG
i colAng1.NW_012115566v1   I 2 C 0
s calJac3.chr4             171374464 61 - 171630274 GCAGTCTGTGCTTCCCTGGCCTGTTTCATCTGGTCATTTG--TCTCTTGACCCAGCCACCCAG
i calJac3.chr4             I 2 C 0
s saiBol1.JH378348            201102 61 -    375362 CCAGTCTGTGCTTCCCGGGCGTCTTTCGTCTGGTCTTTTA--TCTCTTAACCCAGACACCCAG
i saiBol1.JH378348         I 2 C 0
s cebCap1.NW_016108108v1      200792 61 -    373274 CCAGTCTGTGCTTTCCTGGCCTCTTTCATCTGGTCTTTTG--TCTCTTGACCCAGCCACCCAG
i cebCap1.NW_016108108v1   I 2 C 0
s aotNan1.NW_018494050v1      139099 60 -    285216 CCAGTCTGTGCTTCCCTAGCCTCTTTCTTCTGGT-TTTTG--TCTCTTGACCCAGCCACCCAG
i aotNan1.NW_018494050v1   I 2 C 0
s canFam3.chr35             25870556 32 +  26524999 CCGGTGAAGGCGCCTGCAACC--------CGGGCCTGCCG-----------------------
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1515582 92 -   2232465 I

a score=1609579.000000
s hg38.chr6_GL000254v2_alt    129067 174 +   4827813 GGTGGTGTCAAAGCCTTAGAGCAGAAATGCATCAATATT-GAAAGCAAAACGG--AGCTTGTTTTCCTTGGTTTCCATGTGAATTTGAAGAATTGAGAG--AGAATGAAAGTGCCACAAAAAC--AAAAG--AAAAAAAATTGAGGCGAGTCGTGGACAT--------GATAGACATGATTTTGCAAACAA
s panTro5.chr6              29110183 174 + 175400573 GGTGGTGTCAAAGCCTTAGAGCAGAAATGCATCAATATT-GAAAGCAAAACGG--AACTTGTTTTCCTTGGTTTCCATGTGAATTTGAAGAATTGAGAG--AGAATGAAAGTGCCACAAAAAC--AAAAG--AAAAAAAATTGAGGCGAGTCGTGGACAT--------GATAGGCATGATTTTGCAAACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29344489 173 + 173848474 GGTGGTGTCAAAGCCTTAGAGCAGAAATGCATCAATATT-GAAAGCAAAACGG--AGCTTGTTTTCCTTGGTTTCCATGTGAATTTGAAGAATTGAGAG--AGAATGAAAGTGCCACAAAAAC--AAAAG---AAAAAAATTGAGGCGAGTCGTGGACAT--------GATAGGCATGATTTTGCAAACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5144727 169 +   6154872 GGTGGTGTCAAAGCCTTAGAGCAGACATGCATCAATATT-GAAAGCAAAACGG--AGCTTGTTTTCCTTGGTTTCCATGTGAATTTGAAGAATTGAGAG--AGAATGAAAGTGCCACGAAAAC--A-------AAAAAAATTGAGGCGAGTCGTGGACAT--------GATAGACATGATTTTGCAAACAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74145565 176 + 122973662 GGTGGTGTCAAAGCCTTAGAGCAGAAATGCATCAATATT-GAATGCAAAATGG--AGCTTGATTTCCTTGATTTCCATATGAATTTGAAGAATTGAGAGAAAGAATGAAAGTGCCACAAAAAA--CAAAA--AAACAAAATTGAGGCGAGTCGTCGACAT--------GATAGACATGATTTTGCAAACAA
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4              29326042 176 + 172585720 GATGGTGTCAAAGCCTTAGAGCAGAAATGAATCAATATT-AAAAGCAAAATAG--AGCTTGTTTTCCTTCGTTTCCATGTGAATTCGAAGAATTGATAG--AGAATGGAAGTGCCACAAAACA--AAATACAAAACAAAATTGAGGCGAGTCATAGACAT--------GACAGACTTGGTTTTGCAAACAA
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              28986646 176 - 170955103 GATGGTGTCAAAGCCTTAGAGCAGAAATGAATCAATATT-AAAAGCAAAATAG--AGCTTGTTTTCCTTCGTTTCCATGTGAATTCGAAGAATTGATAG--AGAATGGAAGTGCCACAAAACA--AAATACAAAACAAAATTGAGGCGAGTCATAGACAT--------GACAGACTTGGTTTTGCAAACAA
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     1963489 176 -   2996164 GATGGTGTCAAAGCCTTAGAGCAGAAATGAATCAATATT-AAAAGCAAAATAG--AGCTTGTTTTCCTTCGTTTCCATGTGAATTCGAAGAATTGATAG--AGAATGGAAGTGCCACAAAACA--AAATACAAAACAAAATTGAGGCGAGTCATAGACAT--------GACAGACTTGGTTTTGCAAACAA
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012001495v1     1835461 176 -   2157725 GATGGTGTCAAAGCCTTAGAGCAGAAATGAATCAATATT-AAAAGCAAAACAG--AACTTGTTTTCCTTCGTTTCCATGTGAATTCGAAGAATTGATAG--AGAATGGAAGTGCCACAAAACA--AAATACAAAACAAAATTGAGGCGAGTCATAGACAT--------GACAGACTTGGTTTCGCAAACAA
i cerAty1.NW_012001495v1   C 0 I 1
s chlSab2.chr17             28285882 176 -  71996105 GATGGTGTCAAAGCCTTAGAGCAGAAATGAATCAATATT-AAAAGCAAAATAG--AGTTTGTTTTCCTTCCTTTCCATGTGAATTCGAAGAATTGAGAG--AGAATGGAAGTGCCACAAAACA--AAAAACGAAACAAAATTGAGGCGAGTCATAGACAT--------GACAGACTTGGTTTTGCAAACAA
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012104165v1     1963799 176 +   2316924 GATGGTGTCAAAGCCTTAGAGCAGAAATGAATCAATATT-AAAAGCAAAACAG--AGCTTGTTTTCCTTCGTTTCCATGTGAATTCGAAGAATTGATAC--AGAATGGAAGTGCCACAAAACA--AAATACAAAACAAAATTGAGGCGAGTCATAGACAT--------GACAGACTTGGTTTTGCGAACAA
i manLeu1.NW_012104165v1   C 0 I 36
s colAng1.NW_012115566v1     1843795 176 -   3067355 GATGGTGTCAAAGCCTTAGAGCAGAAATGAATCAATATT-AAAAGCAAAATAG--AGCTTGTTTTCCTTCGTTTCCATGTGAATTCGAAGAATTGATAG--AGAATGGAAGTGCCACAAAACA--AAAAACAAAACAAAATTGAGGTGAGTCATAGACAT--------GACAGACATGGTTTTGCAAACAA
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chr4             171374525 186 - 171630274 GGTGGTGTCAAAGCCTTAGGGCATAAATGCATCAATATT-AAAAGCAAAAGAG--AGTTTGTTTTCCTAGGTTTCCATGTGAATTAGAAGAACTGATAG--AGAATGGAAGTGCCACAAAAACAAAAAAACGAAACAAAACTGAGGCGCGTCCTAGATATGGTGAAAGGGTGGACGTAGTCTTGCAAACAA
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            201163 177 -    375362 AGTGATGTCAAAGCCTTAGGGCAGAAATGAATCCATATT-AAAAGCAAAACAG--AGTTTGTTTTCCTAGTTTTCCATGTGAATTAGAAGAACTGATAG--AGAATGGAAGTGCCACAAAAAC-AAAAAACGAAACAAAACCGAGGCGAGTCGTGGACAC--------GGCGGACGTAGTCTTGCAAACAA
i saiBol1.JH378348         C 0 I 1
s cebCap1.NW_016108108v1      200853 178 -    373274 GCTGGTGTCAAAGCCTTAGGGCAGAAATGCATCTATATT-AAAAGCAAAAGAG--AGTTTGTTTTCCTAGGTTTCCATGTGAATTGGAAGAACTGATAG--AGAGTGGAAGTGCCACAAAAAC--------AAAACAAAACTGAGGCGAGTCGTGGACATGGTGACATGGTGGACGTAGTCTTGCAAACAA
i cebCap1.NW_016108108v1   C 0 I 28
s aotNan1.NW_018494050v1      139159 185 -    285216 GGTGGGGTCAAAGCTGTAGGGCAGAAATGCATCAATATT-AAAAGCAAAAGAG--AGTTTGTTTTCCTAGGTTTCCATGTGACTTAGAAGAACTGATAA--AGAATGGAAGTGCCACAAAAAC-AAAAAACTAAACAAAACTGAGGTGAGTCGTGGACATGGTGACATGGTGTACGTAGTCTTGCAAACAA
i aotNan1.NW_018494050v1   C 0 I 1
s otoGar3.GL873742           1515674 151 -   2232465 GGTGATGTCAAGACCCTATAGCAAAAATGGGTTGATATTAAAAAGCCGAAAAGTCGGTTTGTTTTCCTTGGTTTTCTAATGAATTAGAAAAACTAATGG--AGAATGGAAGTGCCAAAAAGGG---------------------GGCGAGCCGAGGATAC-----------------TGTTTAACAAATGA
i otoGar3.GL873742         I 92 C 0
s canFam3.chr35             25870588 124 +  26524999 GGTGCTGCCCGGGGCCTGCTGCGGAGACG--------------------------CGCTCGTCCTCCTTGTTCTTCGTGTGAGTTCAAAGACCTGCAAG--AGGAGGAAAGGACAAGAAAAGG--AA-------------------CAAGCAGCAAACAA------------------GCTTAAGAAACGA
i canFam3.chr35            C 0 C 0

a score=71354.000000
s hg38.chr6_GL000254v2_alt    129241 33 +   4827813 GGCACATCTAGGAGAAAAGGCGGGAGAAAAAT--G
s panTro5.chr6              29110357 33 + 175400573 GGCACAACCAGGAGAGAAGGCGGGAAAAAAAG--G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29344662 33 + 173848474 GGCACAACCAGGAGAGAAGGCGGGAAAAAAAG--G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5144896 35 +   6154872 GGCACAACCAGGAGAGAAGGCGGGAAAAAAGGGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74145742 33 + 122973662 GACACAACCAGGAGAGAGGAGGAAAAAAAAAA--A
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4              29326219 33 + 172585720 GACACAACCAGGAGAGGAAAAAAGAAAAAGGA--A
i rheMac8.chr4             I 1 I 4
s macFas5.chr4              28986823 33 - 170955103 GACACAACCAGGAGAGGAAAAAAGAAAAAGAA--A
i macFas5.chr4             I 1 I 4
s macNem1.NW_012011356v1     1963666 33 -   2996164 GATACAACCAGGAGAGGAAAAAGGGAAAAGAA--A
i macNem1.NW_012011356v1   I 1 I 4
s cerAty1.NW_012001495v1     1835638 32 -   2157725 GACACAACTAGGAGAGGAAAAAAGAAAAAG-A--A
i cerAty1.NW_012001495v1   I 1 I 4
s chlSab2.chr17             28286059 33 -  71996105 GACACAACCAGGAGAGGGaaaaagaaaaagaa--a
i chlSab2.chr17            I 1 I 10
s colAng1.NW_012115566v1     1843972 33 -   3067355 GCCACAACCAGGAGAGGAAAAAAGAAAAAAAA--A
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chr4             171374712 26 - 171630274 CCAGGAAGAGGGAGG--GGAAAAAAGAg-------
i calJac3.chr4             I 1 C 0
s saiBol1.JH378348            201341 28 -    375362 GCCACAACCAGGAGGGCGGTGGAAAAAg-------
i saiBol1.JH378348         I 1 C 0
s aotNan1.NW_018494050v1      139345 28 -    285216 GCCACAACCAGGAGGGGGTGAAAAAAAg-------
i aotNan1.NW_018494050v1   I 1 C 0
s otoGar3.GL873742           1515825 18 -   2232465 ----CGACCCCGACCGCAAAAA-------------
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25870712 30 +  26524999 CGAGCGGCCTGGAAGTGGCTTAAGTAAAAg-----
i canFam3.chr35            C 0 C 0
e cebCap1.NW_016108108v1      201031 28 -    373274 I
e manLeu1.NW_012104165v1     1963975 36 +   2316924 I

a score=4239.000000
s hg38.chr6_GL000254v2_alt    129274 4 +   4827813 AA-GC
s panTro5.chr6              29110390 4 + 175400573 AG-GC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29344695 4 + 173848474 AA-GC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5144931 4 +   6154872 AA-GC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74145775 5 + 122973662 AATAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29326256 4 + 172585720 AC-CC
i rheMac8.chr4             I 4 C 0
s macFas5.chr4              28986860 4 - 170955103 AC-CC
i macFas5.chr4             I 4 C 0
s macNem1.NW_012011356v1     1963703 4 -   2996164 AC-CC
i macNem1.NW_012011356v1   I 4 C 0
s cerAty1.NW_012001495v1     1835674 4 -   2157725 AC-CC
i cerAty1.NW_012001495v1   I 4 C 0
s chlSab2.chr17             28286102 4 -  71996105 aC-CC
i chlSab2.chr17            I 10 C 0
s manLeu1.NW_012104165v1     1964011 4 +   2316924 AC-CC
i manLeu1.NW_012104165v1   I 36 C 0
s colAng1.NW_012115566v1     1844005 4 -   3067355 AA-CC
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25870742 0 +  26524999 C
e saiBol1.JH378348            201369 0 -    375362 C
e otoGar3.GL873742           1515843 0 -   2232465 C
e aotNan1.NW_018494050v1      139373 0 -    285216 C
e cebCap1.NW_016108108v1      201031 28 -    373274 I
e calJac3.chr4             171374738 0 - 171630274 C

a score=1239281.000000
s hg38.chr6_GL000254v2_alt    129278 106 +   4827813 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccC-AACGCTCAACGTGGGCC--AAAATATTTCTATGAC
s panTro5.chr6              29110394 106 + 175400573 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccC-AACGTTTAACGTGGGCC--AAAATAAGTCTATGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29344699 106 + 173848474 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccC-GACGTTTAACGTGGGCC--AAAATATATCTATGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5144935 104 +   6154872 tgga-gtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccC-AACACCCAGCGTGCGCC---AAATATTTCTATGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74145780 106 + 122973662 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccT-CGCACTCGCGGTTAGCC--AAAATATCTCTATAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29326260 107 + 172585720 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccCTCGCGCTTGTTTTGTGCC--AAAATATTTCTATGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28986864 107 - 170955103 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccCTCGCGCTTGTTTTGTGCC--AAAATATTTCTATGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1963707 107 -   2996164 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccCTCGCGCTTGTTTTGTGCC--AAAATATTTTTATGAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1835678 107 -   2157725 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccCTCGCACTTGTCTTGTGCC--AAAATATTTCTATGAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28286106 107 -  71996105 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccCTGACGTTTGTCCTCTGCC--AAAATATTTCTATGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1964015 107 +   2316924 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccCTCGCGCTTGCCTTGTGCC--AAAATATTTCTATGAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1844009 106 -   3067355 TTgaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccC-CGTATGCGCCTTGTGCC--AAAATATTTCTATGGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171374738 106 - 171630274 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccT-CGTACTGTGACTTGGCC--AAAATATTTCTATGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            201369 106 -    375362 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccT-TACGACTTCCCTTGGCC--AAAATATTTCTATGGC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      201059 106 -    373274 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccT-CGTACTTTATTTTGGCC--AAAATATTTCTATGAC
i cebCap1.NW_016108108v1   I 28 C 0
s aotNan1.NW_018494050v1      139373 106 -    285216 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccT-CGCACTCTGACTTGGCC--AAAATATTTCTATGAC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1515843 106 -   2232465 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccT-CGCAGTAAAATCTACTA--GAAACACTTCTATGAC
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25870742 108 +  26524999 tggaggtgccggggattgaacccggggcctcgtgcatgctaagcacgcgctctaccactgagctacacccccT-AGCGCTGGGAAGGCGCTCGGAAATTCTCCTATGGC
i canFam3.chr35            C 0 I 854

a score=636216.000000
s hg38.chr6_GL000254v2_alt    129384 102 +   4827813 CTGT---TACTA---TTATCGGTCGTGCCAAGAAGCA---TATTTTGTCGAA-CTTAATTTTGAATTCGCTATACTGGATATTGTTTCCTGACTGCGCTGAGAGAAGGAAAA
s panTro5.chr6              29110500 105 + 175400573 CTGTTACTACTA---TTATCGGTCGTGCCAAGAAGCA---TATTTTGTCGAA-CTTAATTTTGAATTCGCTATACTGGATATTGTTTCCTGACTGCGCTGAGAGAAGGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29344805 102 + 173848474 CTGT---TACTA---TTATCGGTCGTGCCAAGAAGCA---TATTTTGTCGAA-CTTAATTTTGAATTCGCTATACTGGATATTGTTTCCTGACTGCGCTGAGAGAAGGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5145039 101 +   6154872 CTGT---TACTA---TTATCGGTCGTG-CAAGAAGCA---TATTTTCTCGAA-CTTAATTTTGAATTCGCTATACTGGATATTGTTTCCTGACTGCGCTGAGAGAAGGAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74145886 102 + 122973662 CTGT---TACTA---TTGTCGGTCATGCCATGATGCA---TATTTTGTCGAA-CTTAATTTTGAATTCGCTACACTGGATATTGTTTCCTGGCTACGCTGAGAGAAGGAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29326367  87 + 172585720 CTGT---TCCTA---TTTTCGGGCGGGCTAAGAAG------------------CTTTACTTCTTATTCGCTTTACTGCGTATTGTTTCCTGGCTAC-CTGAGAGAAGGAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28986971  87 - 170955103 CTGT---TCCTA---TTTTCGGGCGGGCTAAGAAG------------------CTTTACTTCTTATTCGCTTTACTGCGTATTGTTTCCTGGCTAC-CTGAGAGAAGGAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1963814  87 -   2996164 CTGT---TCCTA---TTTTCGGGCGGGCTAAGAAG------------------CTTTACTTCTTATTCGCTTTACTGCGTATTGTTTCCTGGCTAC-CTGAGAGAAGTAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1835785  87 -   2157725 CTGT---TCCTA---TTTTCGGGCGGGCTAAGAAG------------------CTTTACTTCTTACTCGCTTTACTGCGTATTGTTTCCTGGCTAC-CTGAGAGAAGGAAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28286213  87 -  71996105 CTGT---TCCTA---TTTTCGGGCGGGCTAAGAAG------------------CTTTACTTCTTATTCGCTTTACTACGTATTGTTTCCTGGCTAC-CTGAGAGAAGGAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1964122  87 +   2316924 CTGT---TCCTA---TTTTCGGGCGGGCTAAGAAG------------------CTTTACTTCTTATTCGCTTTACTGCGTATTGTTTCCTGGCTAC-CTGAGAGAAGGAAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1844115  87 -   3067355 CTGT---TCCTA---TTTTCGGGATGGCTAAGAAG------------------CTTTACTTCTTATTCGCTTTACTGCGTATTGTTTCCTGGCTAC-CTGAGAGAAGGAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171374844 102 - 171630274 CTGT---CAGGA---TTTCCGGTCGTACCAAGAAGCA---TATGCGGTGAAA-CTGCATTTTGAATTCCCTATCCTGGATATTGTCTCCTGGCAACGCTGAGACAAGGACAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            201475 102 -    375362 CTGT---CAGGA---TTTCCGGTTGTGCCAAGCAGCA---CATTAAGTCGAA-CTGCGTTTTGAATTCGCTGTACTGGATATTGTCTCCTGGCAACGCTGAGACAAGGAAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      201165 102 -    373274 CTGT---CAGGA---TTTCCGGTCGTGCCAAGAAGCA---CATTCCGTCAAA-CTGCGTTTTGACTTCGCTGCACTGGATATTGTCTCCTGGCAACGCTGAGAAAAGGAAAA
i cebCap1.NW_016108108v1   C 0 I 2084
s aotNan1.NW_018494050v1      139479 102 -    285216 CTGT---CAGGA---TTTCCGGTCGTGCCAAGAAGCA---TCTTCTGTGAAA-CTGCATTTTGAATTCGCTATACTGGATATTGTGTTCTGACAACGCTGAGACAGGGAAAA
i aotNan1.NW_018494050v1   C 0 I 2059
s otoGar3.GL873742           1515949 109 -   2232465 CGAT---TACTACTGTTTTCACTAGTGACACGAGGTATTTTATTTGATCAAATTTATCCTTTAAACCCTCTACATTGCATACTGTCTCGCGGCTATACTGGGAAAAAGAAAA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I

a score=399801.000000
s hg38.chr6_GL000254v2_alt    129486 55 +   4827813 --CTGAATGTTATATCGAAAGTCCC-GTGCTGGGCCTGGGATCTCCCGCTGCAGGTCA
s panTro5.chr6              29110605 55 + 175400573 --CTGAATGTTATATCGAAAGTCCC-GTGCTGGGCCTGGGATCTCCCGCTGCAGGTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29344907 55 + 173848474 --CTGAATGTTATATCGAAAGTCCC-GTGCTGGGCCTGGGATCTCCCGCTGCAGGTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5145140 55 +   6154872 --CTGAATGTTATATCGAAAGTCCC-GTGCTGGGCCTGGGATCTCCCGCTGCAGATCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74145988 55 + 122973662 --CTGAATGTCATATCGAAAGTCCC-GTGCTGGGCCTGGGATCTCCCACTGCAGGTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29326454 55 + 172585720 --CTGAATATTATATCGAAAGTCCC-GTGCTGGGCCTGGGATCTCCCACTGCAGGTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28987058 55 - 170955103 --CTGAATATTATATCGAAAGTCCC-GTGCTGGGCCTGGGATCTCCCACTGCAGGTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1963901 55 -   2996164 --CTGAATATTATATCGAAAGTCCC-GTGCTGGGCCTGGGATCTCCCACTGCAGGTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1835872 55 -   2157725 --CTGAATATTATATCGAAAGTCCC-GTGCTGGGCCTGGGATCTCCCACTGCAGGTCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28286300 55 -  71996105 --CTGAATATTATATCGAAAGTCCC-GTGCTGGGCCTGGGATCTCTCACTGCAGATCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1964209 55 +   2316924 --CTGAATATTATATCGAAAGTCCC-GTGCTGGGCCTGGGATCTCCCACTGCAGGTCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1844202 55 -   3067355 --CTGAATGTTATATCGAAAGTCCT-GTGCTGGGCCTGGGATCTCCCACTGCAGGTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171374946 48 - 171630274 ---TGAATG-----TCGGAAGTTCC-C-GCTGGGCCCGGGCTCTCCCACCGCAGCTCA
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            201577 48 -    375362 ---AGGATG-----TTGAAAGTTCC-G-GCTGGGCCCGGGATCTCCCGTCGCAGCTCA
i saiBol1.JH378348         C 0 I 2005
s otoGar3.GL873742           1516058 54 -   2232465 AAGTGAACGCTATTTCTTATGTCCCTGTTCTGGTCCTGGGATCTTTTGCTG----TCA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e aotNan1.NW_018494050v1      139581 2059 -    285216 I
e cebCap1.NW_016108108v1      201267 2084 -    373274 I

a score=33423.000000
s hg38.chr6_GL000254v2_alt    129541 5 +   4827813 CCCTC
s panTro5.chr6              29110660 5 + 175400573 CCCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29344962 5 + 173848474 CCCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5145195 5 +   6154872 CCCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74146043 5 + 122973662 CCCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29326509 5 + 172585720 CCCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28987113 5 - 170955103 CCCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1963956 5 -   2996164 CCCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1835927 5 -   2157725 CCCTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28286355 5 -  71996105 CCCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1964264 5 +   2316924 CCCTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1844257 5 -   3067355 CCCTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171374995 4 - 171630274 CCCC-
i calJac3.chr4             I 1 I 2257
s otoGar3.GL873742           1516112 5 -   2232465 CCATC
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e saiBol1.JH378348            201625 2005 -    375362 I
e aotNan1.NW_018494050v1      139581 2059 -    285216 I
e cebCap1.NW_016108108v1      201267 2084 -    373274 I

a score=51732.000000
s hg38.chr6_GL000254v2_alt    129546 7 +   4827813 TCGGACG
s panTro5.chr6              29110665 7 + 175400573 TCGGACG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29344967 7 + 173848474 TCGGACG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5145200 7 +   6154872 TCGGACG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74146048 7 + 122973662 TCGGACG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29326514 7 + 172585720 TCGGACG
i rheMac8.chr4             C 0 I 1764
s macFas5.chr4              28987118 7 - 170955103 TCGGACG
i macFas5.chr4             C 0 I 1764
s macNem1.NW_012011356v1     1963961 7 -   2996164 TCGGACG
i macNem1.NW_012011356v1   C 0 I 1761
s cerAty1.NW_012001495v1     1835932 7 -   2157725 TCGGACG
i cerAty1.NW_012001495v1   C 0 I 1764
s chlSab2.chr17             28286360 7 -  71996105 TCGGACG
i chlSab2.chr17            C 0 I 1692
s manLeu1.NW_012104165v1     1964269 7 +   2316924 TCGGACG
i manLeu1.NW_012104165v1   C 0 I 1764
s colAng1.NW_012115566v1     1844262 7 -   3067355 TCGGACG
i colAng1.NW_012115566v1   C 0 I 1558
s otoGar3.GL873742           1516117 7 -   2232465 CCGGACG
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e saiBol1.JH378348            201625 2005 -    375362 I
e aotNan1.NW_018494050v1      139581 2059 -    285216 I
e cebCap1.NW_016108108v1      201267 2084 -    373274 I
e calJac3.chr4             171374999 2257 - 171630274 I

a score=800.000000
s hg38.chr6_GL000254v2_alt    129553 3 +   4827813 GCC-
s panTro5.chr6              29110672 3 + 175400573 GCC-
i panTro5.chr6             C 0 I 2896
s panPan2.chr6              29344974 3 + 173848474 GCC-
i panPan2.chr6             C 0 I 2928
s gorGor5.CYUI01015250v1     5145207 3 +   6154872 GCC-
i gorGor5.CYUI01015250v1   C 0 I 2881
s nomLeu3.chr1a             74146055 3 + 122973662 CCC-
i nomLeu3.chr1a            C 0 I 3853
s otoGar3.GL873742           1516124 3 -   2232465 -CCC
i otoGar3.GL873742         C 0 I 1871
e canFam3.chr35             25870850 854 +  26524999 I
e saiBol1.JH378348            201625 2005 -    375362 I
e aotNan1.NW_018494050v1      139581 2059 -    285216 I
e cebCap1.NW_016108108v1      201267 2084 -    373274 I
e calJac3.chr4             171374999 2257 - 171630274 I
e colAng1.NW_012115566v1     1844269 1558 -   3067355 I
e manLeu1.NW_012104165v1     1964276 1764 +   2316924 I
e chlSab2.chr17             28286367 1692 -  71996105 I
e cerAty1.NW_012001495v1     1835939 1764 -   2157725 I
e macNem1.NW_012011356v1     1963968 1761 -   2996164 I
e macFas5.chr4              28987125 1764 - 170955103 I
e rheMac8.chr4              29326521 1764 + 172585720 I

a score=0.000000
s hg38.chr6_GL000254v2_alt    129556 2902 +   4827813 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
e canFam3.chr35             25870850  854 +  26524999 I
e saiBol1.JH378348            201625 2005 -    375362 I
e otoGar3.GL873742           1516127 1871 -   2232465 I
e aotNan1.NW_018494050v1      139581 2059 -    285216 I
e cebCap1.NW_016108108v1      201267 2084 -    373274 I
e calJac3.chr4             171374999 2257 - 171630274 I
e colAng1.NW_012115566v1     1844269 1558 -   3067355 I
e manLeu1.NW_012104165v1     1964276 1764 +   2316924 I
e chlSab2.chr17             28286367 1692 -  71996105 I
e cerAty1.NW_012001495v1     1835939 1764 -   2157725 I
e macNem1.NW_012011356v1     1963968 1761 -   2996164 I
e macFas5.chr4              28987125 1764 - 170955103 I
e rheMac8.chr4              29326521 1764 + 172585720 I
e nomLeu3.chr1a             74146058 3853 + 122973662 I
e gorGor5.CYUI01015250v1     5145210 2881 +   6154872 I
e panPan2.chr6              29344977 2928 + 173848474 I
e panTro5.chr6              29110675 2896 + 175400573 I

a score=86193.000000
s hg38.chr6_GL000254v2_alt    132458 157 +   4827813 ggccagcccagcaaggggctcccacagtgcagcggcgggctgaagttctcctcaagcgcggccagagtgggcgccaaggccgaggaggcgcctagagcaagcgaaggctgtgagggctgccagcaagctgtcacctctcagtatggcggctggc----tgt
s panTro5.chr6              29113571 157 + 175400573 ggccagcccagcaaggggctcccacagtgcagcggcgggctgaagttctcctcaagcgcggccagagtgggcgccaaggccgaggaggcgcctagagcaagcgaaggctgtgagggctgccagcaagctgtcacctctcagtatggcggctggc----tgt
i panTro5.chr6             I 2896 C 0
s panPan2.chr6              29347905 157 + 173848474 ggccagcccagcaaggggctcccacagtgcagcggcgggctgaagttctcctcaagcgcggccagagtgggcgccaaggccgaggaggcgcctagagcaagcgaaggctctgagggctgccagcaagctgtcacctctcagtatggcggctggc----tgt
i panPan2.chr6             I 2928 C 0
s gorGor5.CYUI01015250v1     5148091 158 +   6154872 ggccagcccagcaaggggctcccacagtgcaccggcgggctgaagtt---ctcaagcgcggccagagtgggcgccaaggccgaggaggcgcctagagcaagcgaaggctgtgagggctgccagcaagctgtcacctctcagtatggcggctggctgagtgt
i gorGor5.CYUI01015250v1   I 2881 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e saiBol1.JH378348            201625 2005 -    375362 I
e otoGar3.GL873742           1516127 1871 -   2232465 I
e aotNan1.NW_018494050v1      139581 2059 -    285216 I
e cebCap1.NW_016108108v1      201267 2084 -    373274 I
e calJac3.chr4             171374999 2257 - 171630274 I
e colAng1.NW_012115566v1     1844269 1558 -   3067355 I
e manLeu1.NW_012104165v1     1964276 1764 +   2316924 I
e chlSab2.chr17             28286367 1692 -  71996105 I
e cerAty1.NW_012001495v1     1835939 1764 -   2157725 I
e macNem1.NW_012011356v1     1963968 1761 -   2996164 I
e macFas5.chr4              28987125 1764 - 170955103 I
e rheMac8.chr4              29326521 1764 + 172585720 I
e nomLeu3.chr1a             74146058 3853 + 122973662 I

a score=411701.000000
s hg38.chr6_GL000254v2_alt    132615 539 +   4827813 tttagcaccatgtcgtttattgtcatgcatttgtaggattatgaaatgcttcctgaattttgc-ttttacagtaacttgtattcattcatgcatttttcaacctgctcactccagttcaaggtctttggtggctgaagcctaattcaactcctcatagtgtcaggagggaacccaccgtggacaggtggccattccatcacagggcgggctcat--acacacacacaca--cactcacacatatgctcgcgtg------ctctttcactcagactgatgacgctagactcagactagatatgctaatgaacctaatgtgcacatttttgggatgtgggaggaaact----cagacagtggcttccaggagaaatagacttttttctcatcaacattataacaaaatgatgttgaatgaaacaacgttattcaagggtctgctgTACGCagattttcctatttctttaggtcttcatttttgaaggctcttgtgtcaataaaattt--gttt----gatttgtatg-----------------------cttttccttttttttttttttttttttttgttgtt
s panTro5.chr6              29113728 536 + 175400573 tttagcaccatgtcgtttattgtcattcatttgtaggattatgaaatgcttcctgaattttgc-ttttacagtaacttgtattcattcatgcatttttcaacctgctcactccagttcaaggtctttggtggctgaagcctaattcaactcctcatagtgtcaggagggaacccaccgtggacaggtggccattccatcacagggcgggctcat--acacacacacata--cactcacacatatgctcgcgtg------ctctttcactcagactgatgacgctagactcagactagatatgctaatgaacctaatgtgcacatttttgggatgtcgaaggaaact----cagacagtggcttccaggagaaatagacttttttctcatcaacattataacaaaatgatgttgaatgaaacaacgttattcaagggtctgctgTACGCagattttcctatttctttaggtcttcatttttgaaggctcttgtgtcaataaaatttatgttt----gatttgtatg-----------------------cttttccctttttttttttcttttttt-----gtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29348062 535 + 173848474 tttagcaccatgtcgtttattgtcattcatttgtaggattatgaaatgcttcctgaattttgc-ttttacagtaacttgtattcattcatgcatttttcaacctgctcactccagttcaaggtctttggtggctgaagcctaattcaactcctcatagtgtcaggagggaacccaccgtggacaggtggccattccatcacagggcgggctcatacacacacacacaca--cactcacacatatgctcgcgtg------ctctttcactcagactgatgacgctagactcagactagatatgctaatgaacctaatgtgcacatttttgggatgtcgaaggaaact----cagacagtggcttccaggagaaatagacttttttctcatcaacattataacaaaatgatgttgagtgaaacaacgttattcaagggtctgctgTACGCagattttcctatttctttaggtcttcatttttgaaggctcttgtgtcaataaaatttatgttt----gatttgtatg-----------------------cttttccctttttttttttttttgttt--------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5148249 569 +   6154872 tttagcaccttatcgtttattgtcatgcatttgtaggattatgaaatgcttcctgaattttgctttttacagtaacttgtattcattcatgcatttttcaacctgctcactccagttcaaggtctttggtggctgaagcctaattcaactcctcatagtgtcaggagggaacccaccgtggacaggtggccattccatcacagggcgggctcatacacacacacacaca--cactcacacatatgctcgcgtg----ctctctttcactcagactgatgacgctagactcagactagatacgctaatgaacctaatgtgcacatttttgggatgtgggaggaaact----cagacagtggcttccaggaaaaatagacttttttctcatcaacattataacaaaatgatgttgaatgaaacaacgttattcaagggtctgctgTACGCagattttcctatttctttaggtcttcatttttgaaggctcttctgtcaataaaatttatgttt----gatttgtatgcttttccctttttTTTTTAAATACTTTTCCCtttttttttttttttttttttgttgtt
i gorGor5.CYUI01015250v1   C 0 C 0
s colAng1.NW_012115566v1     1845827 489 -   3067355 tttagcaccatatcgtttactataatgcatttgtaggattatagtatgcttcctgaattttga-ttttacagtaacttgtattcattcatgtatttttcaacctgcttacaccaattcaagatcctgggtggctgaagcctaataccactcc--------tcaggaggga-----------acaggtggccattccatcatagggctggctcatacacacacacacacactcactcacacgtatgctcgcgtgctctctctctctcactcagactgattacg------------tagatatgctaatgaacctaatgtgcatatttttgggatgtgggaggaaactcacacagacagcggcttccaggagaaatagatatttttctcatcaatgttataacaaaatgatgttgaatgaaacaatattattcaagagtctgctgtacacagattttcctatttct-----tcttcatttctgaaggctcctgtgtcaataaaatttatgtttaatagattcatatg-----------------------c----------------------------------
i colAng1.NW_012115566v1   I 1558 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e saiBol1.JH378348            201625 2005 -    375362 I
e otoGar3.GL873742           1516127 1871 -   2232465 I
e aotNan1.NW_018494050v1      139581 2059 -    285216 I
e cebCap1.NW_016108108v1      201267 2084 -    373274 I
e calJac3.chr4             171374999 2257 - 171630274 I
e manLeu1.NW_012104165v1     1964276 1764 +   2316924 I
e chlSab2.chr17             28286367 1692 -  71996105 I
e cerAty1.NW_012001495v1     1835939 1764 -   2157725 I
e macNem1.NW_012011356v1     1963968 1761 -   2996164 I
e macFas5.chr4              28987125 1764 - 170955103 I
e rheMac8.chr4              29326521 1764 + 172585720 I
e nomLeu3.chr1a             74146058 3853 + 122973662 I

a score=216175.000000
s hg38.chr6_GL000254v2_alt    133154 182 +   4827813 gagacagaatttcacttttgttgcccaggctagagtgtaatggcgcgatcttggctcaccacaacctccgcctcccgggttcaagcgattcttctgc-------------ttcagcctcccgagtagctgggattacaggcgtgtgccactatgcccagctaatttcgtatttttagtggaaatgggggtttctc
s panTro5.chr6              29114264 195 + 175400573 gagacagaatttcacttttgttgcccaggctagagtgtaatggcgcgatcttggctcatcacaacctccgcctcccgggttcaagcgattcttctgcctcagcctcctgcttcagcctcccgagtagctgggattacaggcgtgtgccactatgcccagctaattttgtatttttagtggaaatgggggtttctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29348597 195 + 173848474 gagacagaatttcacttttgttgcccaggctagagtgtaatggcgcgatcttggctcatcacaacctccgcctcccgggttcaagcgattcttctgcctcagcctcctgcttcagcctcccgagtagctgggattacaggcgtgtgccactatgcccagctaattttgtatttttagtggaaatgggggtttctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5148818 193 +   6154872 gaggcagaatttcacttttgttgcccaggctagagtgtaatggcgcgatcttggctcaccacaacctccgcctcccgggttcaagtgattcttctgcctcagcctcccgcttcagcctcccgagtagctgggatcacaggcgtgtgccactatgcccagctaattttgta-ttttagtggaaat-ggggtttctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74149911 182 + 122973662 gagacagaatttcactcttgttgcccaggccagagtgcaatggcgcgatctcggctcaccacaacctccgcctcccgggttcaagcgattcttctgc-------------ctcagcctcccgagtagctgggattacaggggtgtgccacagtgcccagctaattttgtatttttagtagagacgggggtttctc
i nomLeu3.chr1a            I 3853 C 0
s colAng1.NW_012115566v1     1846316 182 -   3067355 -------------actcttgttgcccaggctggagtgcaatggtgcgatctcagctcactgcagcctccacgtcccgggttcaagcgattcttctgcctcagcctcccacttcagcctcccgagtagctgggattacaggcacatgccaccatgtcccgctaattttggaattttagtagagacagctgtttagt
i colAng1.NW_012115566v1   C 0 I 13
e canFam3.chr35             25870850 854 +  26524999 I
e saiBol1.JH378348            201625 2005 -    375362 I
e otoGar3.GL873742           1516127 1871 -   2232465 I
e aotNan1.NW_018494050v1      139581 2059 -    285216 I
e cebCap1.NW_016108108v1      201267 2084 -    373274 I
e calJac3.chr4             171374999 2257 - 171630274 I
e manLeu1.NW_012104165v1     1964276 1764 +   2316924 I
e chlSab2.chr17             28286367 1692 -  71996105 I
e cerAty1.NW_012001495v1     1835939 1764 -   2157725 I
e macNem1.NW_012011356v1     1963968 1761 -   2996164 I
e macFas5.chr4              28987125 1764 - 170955103 I
e rheMac8.chr4              29326521 1764 + 172585720 I

a score=6640.000000
s hg38.chr6_GL000254v2_alt    133336 7 +   4827813 catgttg
s panTro5.chr6              29114459 7 + 175400573 catgttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29348792 7 + 173848474 catgttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5149011 7 +   6154872 catgttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74150093 7 + 122973662 catgttg
i nomLeu3.chr1a            C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e saiBol1.JH378348            201625 2005 -    375362 I
e otoGar3.GL873742           1516127 1871 -   2232465 I
e aotNan1.NW_018494050v1      139581 2059 -    285216 I
e cebCap1.NW_016108108v1      201267 2084 -    373274 I
e calJac3.chr4             171374999 2257 - 171630274 I
e colAng1.NW_012115566v1     1846498 13 -   3067355 I
e manLeu1.NW_012104165v1     1964276 1764 +   2316924 I
e chlSab2.chr17             28286367 1692 -  71996105 I
e cerAty1.NW_012001495v1     1835939 1764 -   2157725 I
e macNem1.NW_012011356v1     1963968 1761 -   2996164 I
e macFas5.chr4              28987125 1764 - 170955103 I
e rheMac8.chr4              29326521 1764 + 172585720 I

a score=124019.000000
s hg38.chr6_GL000254v2_alt    133343 94 +   4827813 gccaggctggtctcaaactcctgacctcaggtgatccaccagcttcagccccccaaagtgctgggattacaggcatgagccaccccacccggcc
s panTro5.chr6              29114466 94 + 175400573 gccaggctggtctcaaactcctgacctcaggtgatccaccagcttcagccccccaaagtgctgggattacaggcatgagccaccccacccggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29348799 94 + 173848474 gccaggctggtctcaaactcctgacctcaggtgatccaccagcttcagccccccaaagtgctgggattacaggcatgagccaccccacccggcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5149018 94 +   6154872 gccaggctggtctcaaactcctgacctcaggtgatccaccagcttcagccccccaaagtgctgggattacaggcatgagccaccccacctggcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74150100 94 + 122973662 gccaggctggtctcaaactcctgatctcaggtgatccaccagcctcagcctcccaaagtgctgggattacaggtgtgagccactgcacccggcc
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1     1846511 94 -   3067355 gccaggttggtctcgaactcctgacctcaggtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccctgtccagcc
i colAng1.NW_012115566v1   I 13 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e saiBol1.JH378348            201625 2005 -    375362 I
e otoGar3.GL873742           1516127 1871 -   2232465 I
e aotNan1.NW_018494050v1      139581 2059 -    285216 I
e cebCap1.NW_016108108v1      201267 2084 -    373274 I
e calJac3.chr4             171374999 2257 - 171630274 I
e manLeu1.NW_012104165v1     1964276 1764 +   2316924 I
e chlSab2.chr17             28286367 1692 -  71996105 I
e cerAty1.NW_012001495v1     1835939 1764 -   2157725 I
e macNem1.NW_012011356v1     1963968 1761 -   2996164 I
e macFas5.chr4              28987125 1764 - 170955103 I
e rheMac8.chr4              29326521 1764 + 172585720 I

a score=4095.000000
s hg38.chr6_GL000254v2_alt    133437 1 +   4827813 t
s panTro5.chr6              29114560 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29348893 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5149112 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74150194 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1     1846605 1 -   3067355 t
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171377256 1 - 171630274 t
i calJac3.chr4             I 2257 C 0
s saiBol1.JH378348            203630 1 -    375362 t
i saiBol1.JH378348         I 2005 C 0
s cebCap1.NW_016108108v1      203351 1 -    373274 t
i cebCap1.NW_016108108v1   I 2084 C 0
s otoGar3.GL873742           1517998 1 -   2232465 t
i otoGar3.GL873742         I 1871 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e aotNan1.NW_018494050v1      139581 2059 -    285216 I
e manLeu1.NW_012104165v1     1964276 1764 +   2316924 I
e chlSab2.chr17             28286367 1692 -  71996105 I
e cerAty1.NW_012001495v1     1835939 1764 -   2157725 I
e macNem1.NW_012011356v1     1963968 1761 -   2996164 I
e macFas5.chr4              28987125 1764 - 170955103 I
e rheMac8.chr4              29326521 1764 + 172585720 I

a score=296987.000000
s hg38.chr6_GL000254v2_alt    133438 69 +   4827813 gcttttcccttgttaatctatcttttattatgaagtgtcagccatgaacctggcactgggtgggaaaag
s panTro5.chr6              29114561 69 + 175400573 gcttttcccttgttaatctatcttttattatgaagtgtcagccatgaacctggcactgggtgggaaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29348894 69 + 173848474 gcttttcccttgttaatctatcttttattatgaagtgtcagccatgaacctggcactgggtgggaaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5149113 69 +   6154872 gcttttcccttgttaatctatcttttattatgaagtgtcagccatgaacctggcactgggtgggaaaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74150195 69 + 122973662 gcttttcccttgttaatctatcttttattatgaagtgtcagccatgaacctggcactgggtgggaaaag
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1     1846606 69 -   3067355 gctttttccttgttaatctatcttttgttatgaagtgtcagccatgaacctggcactgggtgggaaaag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171377257 69 - 171630274 gcttttctcctgttaatctgtcttctgttatgaggactcagccaagaacctagcactgggtgggaaaac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            203631 68 -    375362 gcttttctcttgttaatctatcttctgttaggaggactcagccatgaacctagcactgggtgggaaag-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      203352 69 -    373274 gcttttctcttgttaatctatcttctgttatgaggactcagccatgaacctagcactgggtgggaaaag
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      141640 69 -    285216 gcttttctcctgttaatctgtcttctgttatgaggactcagccatgaacctagcactgggtgggaaaag
i aotNan1.NW_018494050v1   I 2059 C 0
s otoGar3.GL873742           1517999 69 -   2232465 gcttttctcttgttaatctatctttgattatgaggtctcacccatgaacttagtactggctaaggaaag
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e manLeu1.NW_012104165v1     1964276 1764 +   2316924 I
e chlSab2.chr17             28286367 1692 -  71996105 I
e cerAty1.NW_012001495v1     1835939 1764 -   2157725 I
e macNem1.NW_012011356v1     1963968 1761 -   2996164 I
e macFas5.chr4              28987125 1764 - 170955103 I
e rheMac8.chr4              29326521 1764 + 172585720 I

a score=1046073.000000
s hg38.chr6_GL000254v2_alt    133507 108 +   4827813 atgtttttctgcccTAGACCTTCCTATAAGTGCTTTTGGGACAACACTGCAGGAGTCCCCAAAGGTGAAAATTTACCTGCGGGAGTT-AATAAAAACAGGAATCCCCAG
s panTro5.chr6              29114630 108 + 175400573 atgtttttctgcccTAGACCTTCCTATAAGTGCTTTTGGGACAACACTGCAGGAGTCCCCAAAGGTGAAAATTTACCTGCGGGAGTT-AATAAAAACAGGAATCCCCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29348963 108 + 173848474 atgtttttctgcccTAGACCTTCCTATAAGTGCTTTTGGGACAACACTGCAAGAGTCCCCAAAGGTGAAAATTTACCTGCGGGAGTT-AATAAAAACAGGAATCCCCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5149182 108 +   6154872 atgtttttctgccctaGACCTTCCTATAAGTGCTTTTGGGACAACACTGCAGGAGTCCCCAAAGGTGAAAATTTACCTGCGGGAGTT-AATAAAAACAGGAATCCCCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74150264  95 + 122973662 atgtttttctgcccTAGACCTTCCTATAAGTGCTTTTGG-------------GAGTCCCCAAAGGTGAAAATTTACCTGGGGGAGTT-AATTAAAACAAGAATCCCCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29328285 108 + 172585720 ATGTTTTTCTGCCCTAGACCTTCCTATGAGTGCTTTTGGGACAACACTGCAGGAGTCCCCAAAGGTGAAAATTTACCCGGGAGAGTT-AATAAAAACAAGTATCCCCAG
i rheMac8.chr4             I 1764 C 0
s macFas5.chr4              28988889 108 - 170955103 ATGTTTTTCTGCCCTAGACCTTCCTATGAGTGCTTTTGGGACAACACTGCAGGAGTCCCCAAAGGTGAAAATTTACCCGGGAGAGTT-AATAAAAACAAGTATCCCCAG
i macFas5.chr4             I 1764 C 0
s macNem1.NW_012011356v1     1965729 108 -   2996164 ATGTTTTTCTGCCCTAGACCTTCCTATGAGTGCTTTTGGGACAACACTGCAGGAGTCCCCAAAGGTGAAAATTTACCAGGGAGAGTT-AATAAAAACAAGTATCCCCAG
i macNem1.NW_012011356v1   I 1761 C 0
s cerAty1.NW_012001495v1     1837703 108 -   2157725 ATGTTTTTCTGCCCTAGACCTTCCTATGAGTGCTTTTGGGACAACACTGCAGGAGTCCCCAGAGGTGAAAATTTACCCGGGAGAGTT-AATAAAAACAAGTATCCCCAG
i cerAty1.NW_012001495v1   I 1764 C 0
s chlSab2.chr17             28288059 108 -  71996105 ATGTTTTTCTGCCCTAGACCTTCCTATGAGTGCTTTTGGGACAACACTGCAGGAGTCCCCAAAGGTGAAAATTTACCCAGGAGAGTT-AATAAAAACAAGTATCCCCAG
i chlSab2.chr17            I 1692 C 0
s manLeu1.NW_012104165v1     1966040 108 +   2316924 ATGTTTTTCTGCCCTAGACCTTCCTATGAGTGCTTTTGGGACAACACTGCAGGAGTCCCCAGAGGTGAAAATTTACACGGGAGAGTT-AATAAAAACAAGTATCCCCAG
i manLeu1.NW_012104165v1   I 1764 C 0
s colAng1.NW_012115566v1     1846675 108 -   3067355 atgtttttctgcccTAGACCTTCCTATGAGTGCTTTTGGGACAACACTGCAGGAGTCCCCAAAGGTGAAAATTTACCCGGAAGAGTT-AATAAAAACAAGTATCCCCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171377326 109 - 171630274 aggtttttctcccctaGACCTTCCTGTATGTGCTTTGGGGACAACACTGCAGGAGTCCCCAAAGGTGAACTTTTACCTGGGGGAATTGAATAAATACACACATTCCCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            203699 109 -    375362 aggtttttctcccctaGACCTTCCTCTATGTGCTTTTGGGACAACGCTGCAGGAGTCCCCAAAGGTGAACTTGTCCCTGGGGGTGTTGAATAAAAACACATATTCCCgg
i saiBol1.JH378348         C 0 I 2744
s cebCap1.NW_016108108v1      203421 109 -    373274 aggtttttctcccctaGACCTTCCTGTATGTGCTTTTGGGACAACACTGTAGGAGTCCCCAAGGGTGAACTTTTACCTGGGGGAGTTGAATAAAAACATGTATTCCCAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      141709 109 -    285216 aggtttttctcccctaGACCTTCCTGTATGTGCTTTTGGGACAACACTGCAGGAGTCCCCAAAGGTGAACTTTTACCTGGGGGAGTTGAATAAAAACACGTATTCCCAG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1518068  91 -   2232465 atTTTTTTCTA---TAAGTTTTTTTTT------TTTTTTTATGACACTGCAGGAGTCTCCGAAGGTGGAAaattacctagaagagcttaataaaaacatg---------
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I

a score=2316099.000000
s hg38.chr6_GL000254v2_alt    133615 244 +   4827813 GCCTTACCCCAGAGACTGA--------GATGCTGAGTGCTTTCAGAGTCTCCAGAAAAGGGCCCAGGAATTATTatggggtgacagatgtcacagctagatcgtcctcacatcTATGGAATATTgtgttattt-aatatttcccagttgaatttgatattcaggcaagtttgaaaaccactgGGCCTGAAAATCTAGCC---ACAACAGAAACTGAAACTAGGAT-CTGGGGAAAGTT--AACAAGGGGAGGAGAAAGA
s panTro5.chr6              29114738 244 + 175400573 GCCTTACCCCAGAGACTGA--------GATGCTGAGTGCTTTCAGAGTCTCCAGAAAAGGGCCCAGGAATTATTatggggtgacagatgtcacagctagatcgtcctcacatcTATGGAATATTgtgttattt-aatatttcccagttgaatttgatattcgggcaagtttgaaaaccactgGGCCTGAAAATCTAGCC---ACAACAGAAACTGAAACTAGGAT-CTGGGGAAAGTT--AACAAGGGGAGGAGAAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29349071 244 + 173848474 GCCTTACCCCAGAGACTGA--------GATGCTGAGTGCTTTCAGAGTCTCCAGAAAAGGGcctaggaattattatggggtgacagatgtcacagctagatcgtcctcacatcTATGGAATATTgtgttattt-aatatttcccagttgaatttgatattcgggcaagtttgaaaaccactgGGCCTGAAAATCTAGCC---ACAACAGAAACTGAAACTAGGAT-CTGGGGAAAGTT--AACAAGGGGAGGAGAAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5149290 244 +   6154872 GCCTTACCCCAGAGACTGA--------GATGCTGAGTGCTTTCAGAGTCTCCAGAAAAGGGCCCAGGAATTATTatggggtgacagatgtcacagctagatcgtcctcacatcTATGGAATATTgtgttattt-aatatttcccagttgaatttgatattcgggcaagtttgaaaaccactgGGCCTGAAAATCTAGCC---ACAACAGAAACTGAAACTAGGAT-CTGGGGAAAGTT--AACAAGGGGAGGAGAAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74150359 247 + 122973662 GCCTTACCCCAGAGACTGA--------GATGCTGAGTGCTTTCAGAGTCTCCAGAAAAGGGCCCAGGAATTATTGtggggtgacagatgtcacagccagatcgtcttcacatcTGTGGAATATTgtgttattt-aatatttcccagttgaatttgatattcaggcaaatttgaaaaccactgGGCCTGAAAATCTAGCCACAACAACAGAAACTGAAACTAGGAT-CTGGGGAAAGTT--AACAAGGGGAGGAGAAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29328393 247 + 172585720 GCCTTACCCCAGAGACTGA--------GATGCTGAGTGCTTTCAGAGTCTCCAGAAAAGGGCCCAGGAatcattatggggtcacagatgtcacagccagatcatcttcacatcTGTGGACTCTagtgttattt-aatatttcccagctgaatttgatactcaggcaagtttgaaaaccactgGGCCTGAAAATCTAGCCACAACAACAGAAACTGAAACTAGGAT-CTGGGGAAAGTT--AGCAAGGGGAGGAGAAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28988997 247 - 170955103 GCCTTACCCCAGAGACTGA--------GATGCTGAGTGCTTTCAGAGTCTCCAGAAAAGGGCCCAGGAatcattatggggtcacagatgtcacagccagatcatcttcacatcTGTGGACTCTagtgttattt-aatatttcccagctgaatttgatactcaggcaagtttgaaaaccactgGGCCTGAAAATCTAGCCACAACAACAGAAACTGAAACTAGGAT-CTGGGGAAAGTT--AGCAAGGGGAGGAGAAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1965837 247 -   2996164 GCCTTACCCCAGAGACTGA--------GATGCTGAGTGCTTTCAGAGTCTCCAGAAAAGGGCCCAGGAatcattatggggtcacagatgtcacagccagatcatcttcacatcTGtggactcgagtgttattt-aatatttcccagctgaatttgatactcaggcaagtttgaaaaccactgGGCCTGAAAATCTAGCCACAACAACAGAAACTGAAACTAGGAT-CTGGGGAAAGTT--AGCAAGGGGAGGAGAAAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1837811 247 -   2157725 GCCTTACCCCAGAGACTGA--------GATGCTGAGTGCTTTCAGAGTCTCCAGAAAAGGGCCCAGGAatcattatggggtcacagatgtcgcagccagatcatcttcacatcTGTGGACTCTagtgttattt-aatatttcccagttgaatttgatactcaggcaagtttgaaaaccactgGGCCTGAAAATCTAGCCACAACAACAGAAACTGAAACTAGGAT-CTGGGGAAAGTT--AGCAAGGGGAGGAGAAAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28288167 247 -  71996105 GCCTTACCCCAGAGACTGA--------GATGCTGAGTGCTTTCAGAGTCTCCAGAAAAGGGCCCAGGAatcattatggggtcacagatgtcgcagccagatcgtcttcacatcTGTGGACTCTAGTGTTATTT-CATATTTCCCAGTTGAATTTGATACTCAGGCAAGTTTGAAAACCACTGGGCCTGAAAATCTAGCCACAACAACAGAAACTGAAACTAGGAT-CTGGGGAAAGTT--AGCAAGGGGAGGAGAAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1966148 247 +   2316924 GCCTTACCCCAGAGACTGA--------GATGCTGAGTGCTTTCAGAGTCTCCAGAAAAGGGCCCAGGAatcattatggggtcacagatgtcgcagccagatcatcttcacatcTGTGGACTCTagtgttattt-aatatttcccagttgaatttgatactcaggcaagtttgaaaaccactgGGCCTGAAAATCTAGCCACAACAACAGAAACTGAAACTAGGAT-CTGGGGAAAGTT--AGCAAGGGGAGGAGAAAGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1846783 247 -   3067355 GCCTTACCCCAGAGACTGA--------GATGCTGTGTGCTTTCAGAGTCTCCAGAAAAGGGCCCAGGAatcattatggggtcacagatgtcgcagccagatcatcttcacatcTGTGGAATCTTgtgttattt-aatatttcccagttgaatttgatactcaggcaagtttgaaaaccactgGGCCTGAAAATCTAGCCACAACAACAGAAACTGAAACTAGGAT-CTGGGGAAAGTT--AGCAAGGGGAGGAGAAAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171377435 247 - 171630274 GCCTTACCCAAGAGACTGA--------GATGCTGAGTGCTTTCAGAGTCTCCAGAAAAGGGTGCAGGAATCTTCatggggtaacagatgtcacagccagatcgtcctcacatccATGCAATCTTgtgttattt-aatctttcccagttgaattttataatcaggcaagggtgagaaccactgGGCCTGAAAATCGAGCCACAGCAACAGAAACTGAAACTAGGAT-TTAGGGAAAGTT--AACAAGGGGAGGAGAAAGA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      203530 246 -    373274 GCCTTACCCAAGAGACTGA--------GATGCTGAGTGCTTTCAGAGTCTCCAGAAAAGGGCCTGGGAATCTTCAT-gggtgacagatgtcgcagccagatcgtcctcacatcTGTGCAATCTTGTGTTATTT-AATCTTTCCCAGTTGAATTTGATAATCAGGCAAGTGTAAAAACCACTGGGCCTGAAAATCTAGCCACAGCAACAGAAACTGAAACTGGGAT-CTGGGGAAAGTT--AACAAGGGGAGGAGAAAGA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      141818 247 -    285216 GCCTTACCCAAGAGACTGA--------GATGCTGAGTGCTCTCAGAGTCTCCAGAAAAGGGCCCAGGAATCTTCatggggtgacagatgtcgcagcaagatggtcctcacatccGTGCAATCTTGTGTTATTT-AATCTTTCCCAGTTGAATTTGATAATCAGGCAAGTGTGAGAACCACTGGGCCTGAAAATCTAGCCACAGCAACAGAAACTGAAACTAGGAT-CTGGGGAAAGTT--AACTAGGAGAGGAGAAAGA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1518159 204 -   2232465 -tttttccccagaaactgagaccaaatgattctgaatgctctcagaatctttggaaggtggcctgggaatc---------------------------------------------------tcgtgttacttaaatttttcccagttgaactttataatcaagtaagtttggaaactactgGGCCTGGAAATCTAGTG---ACAATAAAAATCAAAACTAGGATCCCAGACAAAGTTAAAACAGGGAGAGGGAAAAGA
i otoGar3.GL873742         C 0 I 2
e canFam3.chr35             25870850 854 +  26524999 I
e saiBol1.JH378348            203808 2744 -    375362 I

a score=3137648.000000
s hg38.chr6_GL000254v2_alt    133859 364 +   4827813 TTGGAAAGtattacaagaaaaacttgggattgtaacgttccccccaaactgggaaggtcccggaagaccaaagacagtccagc-ttaataagcaggtgagtttagtaggacttagatacagggtactcctgggtgcagcaggatagctctagagatccatgccgcctcctgtctttaaactgtttctaagttaattttctggctttttgcctactgtgtttgagcaatgagactgtttttcttggtagg-ttctcagatactctctgggatgtttgtgttctcaaggacacctgctcctctgctgggcatcgtggccttggctcaccactgggccttcagggttcaggcagtagacatacactctt
s panTro5.chr6              29114982 364 + 175400573 TTGGAAAGtattacaagaaaaacttgggactgtaacgttccccccaaactgggaaggtcccggaagaccaaagacagtccagc-ttaataagcaggtgagtttagtaggacttagatacagggtactcctgggtgcagcaggatagctctagagatccatgccgcctcctgtctttaaactgtttctaagttaattttctggctttttgcctactgtgtttgagcaatgagactgtttttcttggtagg-ttctcagatactctctgggatgtttgtgttctcaaggacacctgctcctctgctgggcatcgtggccttggctcaccactgggccttcagggttcaggcagtagacatacactctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29349315 364 + 173848474 TTGGAAAGtattacaagaaaaacttgggactgtaacgttccccccaaactgggaaggtcccggaagaccaaagacagtccagc-ttaataagcaggtgagtttagtaggacttagatacagggtactcctgggtgcagcaggatagctctagagatccatgccgcctcctgtctttaaactgtttctaagttaattttctggctttttgcctactgtgtttgagcaatgagactgtttttcttggtagg-ttctcagatactctctgggatgtttgtgttctcaaggacacctgctcctctgctgggcatcgtggccttggctcaccactgggccttcagggttcaggcagtagacatacactctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5149534 363 +   6154872 TTGGAAAGtattacaagaaaaacttgggactgtaacgttccccctaaactgggaaggtcccggaagaccaaagacagtccagc-ttgataagcaggtgagtttagtaggacttagataca-ggtactcctgggtgcagcaggatagctctagagatccatgccgcctcctgtctttaaactgtttctaagttaattttctggctttttgcctactgtgtttgagcaatgagactgtttttcttggtagg-ttctcagatactctctgggatgtttgtgttctcaaggacacctgctcctctgctgggcatcgtggccttggctcaccactgggccttcagggttcaggcagtagacatacactctt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74150606 362 + 122973662 TTGGAAAGTATGacaagaaaaacttgggactgtaacgttcccctcaaactgggaaggtcccggaagaccaaagacaatccagc-ttaataagcaggtgagtttagtaggacttagatacagggtactcctgggtgcagcaggatagctccagagatccatcccgcctcctgtctttaaactgtttttaagttaattttctggctttttgcctac--tgtttgagcaatgagactgtttttcttggtagg-ttctcagatactctctgggatgtttgtgttctcaaggacacctgctcctctgctgggcatcgtggccttggctcaccactgggccttcagggttcaggcagtagacatacactctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29328640 362 + 172585720 TTGGAAAGtattacaagaaaaacttgggactgtaacgtttcccccaaactaggaaggtcccggaagaccaaagacagtccagc-ttaataagcaggtgagtttagtaggacttagatacagggtactcctgggtgcagcaggacagctgtagagatccatgctgcctcctgtctttaaactctttttcagttaattttctggctttttgcctactgtgtttgagcaatgagactgtttttcttgggagg-ttctcagatactgtctgggatgtt--tgttctcaaggacacctactcctctgctgggcatcgtagccttggctcaccaccgggccttcagggttcagggagtagacatacactctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28989244 362 - 170955103 TTGGAAAGtattacaagaaaaacttgggactgtaacgtttcccccaaactaggaaggtcccggaagaccaaagacagtccagc-ttaataagcaggtgagtttagtaggacttagatacagggtactcctgggtgcagcaggacagctgtagagatccatgctgcctcctgtctttaaactctttttcagttaattttctggctttttgcctactgtgtttgagcaatgagactgtttttcttgggagg-ttctcagatactgtctgggatgtt--tgttctcaaggacacctgctcctctgctgggcatcgtagccttggctcaccaccgggccttcagggttcagggagtagacatacactctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1966084 362 -   2996164 TTGGAAAGtattacaagaaaaacttgggactgtaacgtttcctccaaactaggaaggtcccggaagaccaaagacagtccagc-ttaataagcaggtgagtttagtaggacttagatacagggtactcctgggtgcagcaggacagctgtagagatccatgctgcctcctgtctttaaactctttttcagttaattttctggctttttgcctactgtgtttgagcaatgagactgtttttcttgggagg-ttctcagatactgtctgggatgtt--tgttctcaaggacacctgctcctctgctgggcatcgtagccttggctcaccaccgggccttcagggttcagggagtagacatacactctt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1838058 362 -   2157725 CTGGAAAGtattacaagaaaaacttgggactgtaacgtttcccccaaactgggaaggtcccggaagaccaaagacagtccagc-ttaataagcaggtgagtttagtaggacttagatacagggtactcctgggtgcagcaggacagctgtagagatccatgctgcctcctgtctttaaactgtttttcagttaattttctggctttttgcctactgtgtttgagcaatgagactgtttttcttgggagg-ttctcagatactgtctgggatgtt--tgttctcaaggacacctgctcctctgctgggcatcgtggccttggctcaccaccgggccttcagggttcagggagtagacatacactctt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28288414 355 -  71996105 CTGGAAAGtattacaagaaaaacttgggactgtaacgtttccccc---ct----aggtcccggaagaccaaagacagtccagc-ttaataagcaggtgagtttagtaggacttagatacagggtactcctgggggcagcaggacagctgtagagatccatgctgcctcctgtctttaacctgtttttcagttaattttctggctttttgcctactgtggttgagcaatgagacttttttccttgggagg-ttctcagatactctctgggatgtt--tgttctcaaggacacctgctcctctgctgggcatcgtggccttggctcatcaccgggccttcagggttcagggagtagacatacactctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1966395 363 +   2316924 CTGGAAAGtattacaagaaaaacttgagactgtaacgtttcccccaaactgggaaggtcccggaagaccaaagacagtccagc-ttaataagcaggtgagtttagtaggacttagatacagggtactcctgggtgcagcaggacagctgtagagatccatgctgcctcctgtctttaaactgtttttcagttaattttctggctttttgcctacggtgtttgagcaatgagactgtttttcttgggagatttctcagatactgtctgggatgtt--tgttctcaaggacacctgctcctctgctgggcatcgtggccttggctcaccaccgggccttcagggttcagggagtagacatacactctt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1847030 360 -   3067355 TTGGAAAGtattacaagaaaaacttgggactgtaacgtttcccccaaactgggaaggtcccggaagagcaaatacagtccagc-ttaataagcaggtgagtttagtaggacttagatacagggtactcctgggtgcggcaggacagctctagagatccatgctgcctcctgtctt--acctgtttttcagttaattttctggctttttgcctattgtgtttgagcaatgagactgtttttcttgggagg-ttctcagatactctctgggatgtt--tgttctcaaggacacctgctcctctgctgggcatcgtggccttggctcaccaccaggccttcagggttcagggagtagacatacactctt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171377682 364 - 171630274 TTAGAAAG-ACTGAaagaaaaacttgggactataacattccctgcaaactgggatggtcctggaagagcaaagacagtccagctttaataagcaggtgagcttagcagcacttaaatacagtgtgctcctgggcgcagcaagacagctctagagagccatgccacctcctctctttaaactgtttttaagttaattttctggatttttgccttctgtgttcaagcaatgagactgtttttcttggtagg-ttctcagatgctctctgagatgtttgcattcttaaggacacctgctcctctgctggacatcctggccttggttgaccactgggccttcaggatttaggtactagacgtacactctt
i calJac3.chr4             C 0 I 2337
s cebCap1.NW_016108108v1      203776 364 -    373274 TTAAAAAGTACtagaagaaaaacttgggattgtaacattccccacaaactgggaaggtcctggaagaccaaagacagtccagctttaataagcaggtgagcttagtagcatttagatacagggtgctcctgggtgcagcaggacagctctagagatccatgccacctcctctctttaaactgtttttaagttaattttctggatttttgccttctgtgttcaatcaatgagactgtttttcttggta-g-ttctcagatgctgtctgagatctttgcattcttaaggacacctgctcctctgctgggcatcctggccttggctgagcactgggccttcaggatttaggcactagacatacactctt
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      142065 365 -    285216 TTAGAAAGTACtaaaagaaaaacttgggactgtaacattccctgcaaactgggatggtcctggaagaccaaaggcggtccagctttaataagcaggtgagcttagtagcacttagagacagggtgctcctgggtacagcaggacagctctagagatccatgccacctcctctctttaaactgtttttaagttaattttctggatttttgccttctgtgttcgagcaatgagactgtttttcttcgtagg-ttctcagatgctctctgagatgtgtgcgttcttaaggacacctgctcctctgctgggcatcctggccttggctgaccactgggccttgagggtttaggcactagacatacactctt
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e saiBol1.JH378348            203808 2744 -    375362 I
e otoGar3.GL873742           1518363   2 -   2232465 I

a score=4804788.000000
s hg38.chr6_GL000254v2_alt    134223 633 +   4827813 aagtgacatggtgggtgatctgtcatgctgcaatccaccctgcctcccatctcttacattctttctgccaatcttgtgtgagactccttgagtagggtggaaggaaagaactatacaggtctata----acgtctagccatggcttgcgcatacaggtcacatctacagtatacgtaggagcacaaaaagcagaagttaactacaattataatgtctattagcaaaacctaattcccatgactagagaagctgtgtaaccaatttgagaatgagtaaaagaaacctaattaggttatatcatggatctgagttgacaaatggtttaaagtacctctgacattactctcttcatcagggaaataggtgcaacagttagcacctagaaaggcacattttgggtctttgtcacgttggcgattgagcctctaggtggaggcaatccttagtgagcccgggttgcattatcagtgctattgtacaagtcactccagttctgtcaggagaaaggcagagtattttaaggcatatcattattattttatagggagaggtatctgactggttgttgactgcttctggagttgcagctcagtctagaaagacattaccagctgccatgagtagcaggaacaacct
s panTro5.chr6              29115346 632 + 175400573 aagtgacatggtgggtgatctgtcatgctgca-tccaccctgcctcccatctcttacattctttctgccaatcttgtgcgagactccttgagtagggtggaaggaaagaactatacaggtctata----acgtctagccatggcttgcgcatacaggtcacatctacagtatacgtaggagcacaaaaagcagaagttaactacaattataatgtctattagcaaaacataattcccatgactagagaagctgtgtaaccaatttgagaatgagtaaaagaaacctaattaggttatatcatggatctgagttgacaaatggtttaaagtacctctgacattactctcttcatcagggaaataggtgcaacagttagcacctagaaaggcacattttgggtctttgtcacgttggcgattgagcctctaggtggaggcaattcttagtgagcccggattgcattatcagtgctattgtacaagtcactccagttctgtcaggagaaaggcagagtattttaaggcatatcattattatttcatagggagaggtatctgactggttgttgactgcttctggagttgcagctcagtctagaaagacattaccagctgccatgagtagcaggaacaacct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29349679 633 + 173848474 aagtgacatggtgggtgatctgtcatgctgcaatccaccctgcctcccatctcttacattctttctgccaatcttgtgcgagactccttgagtagggtggaaggaaagaactatacaggtctata----acgtctagccatggcttgcgcatacaggtcacatctacagtatacgtaggagcacaaaaagcagaagttaactacaattataatgtctattagcaaaacataattcccatgactagagaagctgtgtaaccaatttgagaatgagtaaaagaaacctaattaggttatatcatggatctgagttgacaaatggtttaaagtacctctgacattactctcttcatcagggaaataggtgcaacagttagcacctagaaaggcacattttgggtctttgtcacgttggcgattgagcctctaggtggaggcaatccttagtgagcccggattgcattatcagtgctattgtacaagtcactccagttctgtcaggagaaaggcagagtattttaaggcatatcattattatttcatagggagaggtatctgactggttgttgactgcttctggagttgcagctcagtctagaaagacattaccagctgccatgagtagcaggaacaacct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5149897 633 +   6154872 aagtgacatggtgggtgatctgtcatgctacaatccaccctgcctcccatcttttacattctttctgccaatcttgtgcgagactccctgagtagggtggaaggaaagaactatacaggtctata----acgtctagccatggcttgcgcatacaggtcacatctacagtatacgtaggagcacaaaaagcagaagttaactacaattataatgtctattagcaaaacataattcccatgactagagaagctgtgtaaccaatttgagaatgagtaaaagaaacctaattaggttatatcatggatctgagttgacaaatggtttaaagtacctctgacattactctcttcatcagggaaataggtgcaacagttagcacctagaaaggcacattttgggtctttgtcacgttggcgattgagcctctaggtggaggcaatccttagtgagcccgggttgcattatcactgctattgtacaagtcactccagttctgtcaggagaaaggcagagtattttaaggcatatcattattatttcatagggagaggtatctgactggttgttgactgcttctggagttgcagctcagtctagaaagacattaccagctgccatgagtagcaggaagaacct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74150968 633 + 122973662 aagtaacatggtgggtgatctgtcatgctacaatccaccctgccccccatctcttacattctttctgccagtcttgtgcgagactccctgagtagggtgcaaggaaagaactatacaggtctata----atgtatagccatggcttgcacatacaggccacatctacagtatacgtaggagcacaaaaagcagaagttaactacaattataatgtctattagcaaaacataattcccatgactagagaagctatgtaaccaatttgagaatgagtaaaagaaacctaattaggttgtatcatggatctgagttgacaaatggtttaaagtacctgtgacattactctcttcatcagggaaataggtgcaacaggtagcacctagaaaggcacattttcggtctttgtcacgttggcgattgagcctctaggtggaggcaacccctagtgagcccgggttgcattatcagtgctattgtacaagtcactccagttctgtcaggagaaaggcagagtattttaaggcatatcattattatttcatagggagaggtatctgactggttgttgactgcttctggagttgcagctcagtctagaaagacattaccagctgccatgagtagcaggaacaacct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29329002 633 + 172585720 aagtaacatggtaggtgatctgtcacactacaGtccaccctgccccctagctcttacattctttctgccaatcttgtgcgagactccctgtgtagggtgcaaggaaagaaccatacaggtctata----acgtatagccgtggcttgtgcatacaggccacatctacagtatacgtagcagcacaaaaagcagaagctaactacaattataatgtctattagcaaaacataattcccataactagggaaactgtgtaaccaatttgaaaatcattaaaagaaacctaattaggttatatcatagatctgagttgacaaatggtttaaagtatctgtgacattattctctaaatcagggaaataggtgcaacaggtagcacctaaaaaggcacattttgggtctttgtcacgttggcgattgagcctctaagtggaggcaatccctagtgagcccaggttgcattatcagtgctattgtacacgtcactccagttctgtcaggagaaaggcagagtattttaaggcatatcactattatttgatagggagaggtatctgactggttgttgactgcttcggaagttgcagctcagtctagaaagacattaccagctgccatgagtagcagaaacaacct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28989606 633 - 170955103 aagtaacatggtaggtgatctgtcacactacaGtccaccctgccccctagctcttacattctttctgccaatcttgtgcgagactccctgtgtagggtgcaaggaaagaaccatacaggtctata----acgtatagccgtggcttgtgcatacaggccacatctacagtatacgtagcagcacaaaaagcagaagctaactacaattataatgtctattagcaaaacataattcccataactagggaaactgtgtaaccaatttgaaaatcattaaaagaaacctaattaggttatatcatagatctgagttgacaaatggtttaaagtatctgtgacattattctctaaatcagggaaataggtgcaacaggtagcacctaaaaaggcacattttgggtctttgtcacgttggcgattgagcctctaagtggaggcaatccctagtgagcccaggttgcattatcagtgctattgtacacgtcactccagttctgtcaggagaaaggcagagtattttaaggcatatcactattatttgatagggagaggtatctgactggttgttgactgcttcggaagttgcagctcagtctagaaagacattaccagctgccatgagtagcagaaacaacct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1966446 633 -   2996164 aagtaacatggtaggtgatctgtcacactacaGtccaccctgccccccagctcttacattctttctgccaatcttgtgcgagactccctgtgtagggtgcaaggaaagaaccatacaggtctata----acatatagccgtggcttgtgcatacaggccacatctacagtatacgtagcagcacaaaaagcagaagctaactacaattataatgtctattagcaaaacataattcccataactagggaaactgtgtaaccaatttgaaaatcattaaaagaaacctaattaggttatatcatagatctgagttgacaaatggtttaaagtatctgtgacattattctctaaatcagggaaataggtgcaacaggtagcacctaaaaaggcacattttgggtctttgtcacgttggcgattgagcctctaagtggaggcaatccctagtgagcccaggttgcattatcagtgctattgtacacgtcactccagttctgtcaggagaaaggcagagtattttaaggcatatcactattatttgatagggagaggtatctgactggttgttgactgcttcggaagttgcagctcagtctagaaagacattaccagctgccatgagtagcagaaacaacct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1838420 633 -   2157725 aagtaacgtggtaggtggtctgtcacactacaGtccaccctgccccccagctcttacattctttctgccaatcttgtgcgagattccctgtgtagggtgcaaggaaagaaccatacaggtctata----acgtatagccgtggcttgtgcatacgggccacatctacagtatacgtagcagcacaaaaagcagaagctaactacaattataatgtctattagcaaaacataattcccataactagggaaactgtgtaaccaatttgaaaatcattaaaagaaacctaattaggttatatcatagatctgagttgacaaatggtttaaagtatctgtgacattattctctaaatcagggaaataggtgcaacaggtagcacctagaaaggcacattttgggtctttgtcacgttggcgattgagcctctaagtggaggcaatccctagtgagcccaggttgcattatcagtgctattgtacacgtcactccagttctgtcaggagaaaggcagagtattttaaggcatatcactattatttgatagggagaggtatctgactggttgttgactgctttggaagttgcagctcagtctagaaagacattaccagctgctatgagtagcagaaacaacct
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28288769 636 -  71996105 aagtaacatggtaggtgatctgtcacactacaatccaccctg-cccccagctcttacattctttctgccaatcttgtgcgagactccctgtgcagggtgcaaggaaagaaccatacaggtctataacgtacgtatagccgtggcttgtgcatacaggccacatctacagtatacgtagcagcacaaaaagcagaagctaactacaattataatgtctattagcaaaacataattcccataactagggaaactgtgtaaccaatttgagaatcattaaaagaaacctaattaggatatatcatggatctgagttgacaaatggtttaaagtatctgtgacattattctctaaattagggaaataggtggaacaggtagcacctagaaaggcacattttgggtctttgtcacgttggcgattgagcctctaagtggaggcaatccctagtgagcccacgttgcattatcagtgctattgtacaagtcactccagttctgtcgggagaaaggcagactattttaaggcatatcactattatttgatagggagaggtatctgactggttgttgactgcttcggaagttgcagctcagtctagaaagacattaccagctgccatgagtagcagaaacaacct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1966758 633 +   2316924 aagtaacatggtaggtggtctgtcacactacaGtccaccctgccccccagctcttacattctttctgccaatcttgtgcgagactccctgtgtagggtgcaaggaaagaaccatacaggtctata----acgtatagccgtggcttgtgcatacgggccacatctacagtatacgtagcagcacaaaaagcagaagctaactacaattataatgtctattagcaaaacataattcccataactagggaaactgtgtaaccaatttgaaaatcattaaaagaaacctaattaggttatatcatagatctgagttgacaaatggtttaaagtatctgtgacattattctctaaatcagggaaataggtgcaacaggtagcacctagaaaggcacattttgggtctttgtcacgttggcgattgagcctctaagtggaggcaatccctagtgagcccaggttgcattatcagtgctattgtacacgtcactccagttctgtcaggagaaaggcagagtattttaaggcatatcactattatttgatagggagaggtatctgactggttgttgactgcttcagaagttgcagctcagtctagaaagacattaccagctgccatgagtagcagaaacaacct
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1847390 629 -   3067355 aagtaacatggtaggtgatctgttgcactacaatccaccctgccccccagctcttacattctttctgccaatcttgtgtgagactccctgtgtaggatgcaaggaaagaaccattcaggtctata----atgtatagccgtggcttgtgcatacgggccacatctacagtatacgtagcagcacaaaaagcagaagctaactacaattataatgtctattagcaaaacataattctcataactagggaaattgtgtaaccaatttgagaatgattaaaggaaacctaattacgttatatcatggatctgagttgacaaatggtttaaagtatctgtgacattattctctaaatcagggaaataggtgcaacaggtagcacctagaaaggcacattttgggtctttgtcatgttggcgattgagcctctaggtggaggcaatccctagtgagcctgggttgcattatcagtgctattgtacaag----tccagttctgtcaggagaaaggccgagtattttaaggcatatcactattatttgatagggagaggtatctgactggttgttgactgcttcggaagttgcagctcagtctagaaagacattaccagctgccatgagtagcagaaacaacct
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      204140 632 -    373274 aagtaacctagtggaggatgtgtcacactgcaAGccaccctgctccccagctctcacattctttctgccagtcttgtatgggagtccctgagtaggctgcaaggaaagaacgatacacgcctata----acgtatagccgtggcttgtgcatacagaccacatctactgtatacgtagcagtgcagaaagcaggagctaactacaattacaatgtccatcagcagaacataattgccatgactagggaagctgtgtaaccaatttgagaatgagtaaaagaaacctagttaggttgtatcatggatatgagttgacaaatggtttaacatatctgtgacatgactctcttcatcagggaaataggtgcaacaggtggcaccttaaaaggcacattttgggtctttgacacgttggcgattgagccccgaggtggaggctgtgcctagtgagcccgggttgcatcatctgtactgttgcagcagtcgctccagttccatcaggagaaaggcagaggatttcaaggcatatcattattatccgacagggagaggcgtctgg-tggttgttgactgcttctggagttgcagctcagtctagaaagacatgactagctgccgtgagtggcaggaacaacct
i cebCap1.NW_016108108v1   C 0 I 819
s aotNan1.NW_018494050v1      142430 632 -    285216 aagtaagctggtggaggatgtatcacactgcaatccaccctgttctccagctctcacattctttctgccgatcctgtacaggagtccctgagtagggtgccgggaaagaacgacatgcgcctgta----acgtacagccgtggcttgtgcgtacagaccacatctactgtatacgtagcagcgcagaaagcagaagctaactacagttataatgtctataagcaaaacataattgccatgactagggaagctgtgtaaccaatttgagaatgagtaaaagaaacctaattaggttgtatcatggatctgagttgacaaatggtttaaagtatctgtgacatgactctcatcatcagggaaataggcgcaacaggtggcaccttgaaaggcacattttgggtctttgacacgttggtgattgagcctcgaggtggaggctatgcctagtgagcccgggttgcatcatctgtgctgttgtaggagtcactccagttctgtcaggagaaaggcagaggatttcaaggcatatcattattatccgatagggagaggcatctga-tggttgttgactgcttctggagttgcggctcagtctagaaagacattaccagctaccatgagtggcaggaacaacct
i aotNan1.NW_018494050v1   C 0 I 1923
e canFam3.chr35             25870850 854 +  26524999 I
e saiBol1.JH378348            203808 2744 -    375362 I
e otoGar3.GL873742           1518363   2 -   2232465 I
e calJac3.chr4             171378046 2337 - 171630274 I

a score=346246.000000
s hg38.chr6_GL000254v2_alt    134856 60 +   4827813 atgggtataaacacaggtggttagtaggaactctcacaggcgtattcactccttgcaaca
s panTro5.chr6              29115978 60 + 175400573 atgggtataaacacaggtggttagtaggacctctcacaggcgtattcactccttgcaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29350312 60 + 173848474 atgggtataaacacaggtggttagtaggaactctcacaggcgtattcactccttgcaaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5150530 59 +   6154872 at-ggtataaacacaggtggttagcaggaactctcacaggcgtattcactccttgcaaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74151601 60 + 122973662 atgggtataaacacaggtggttagtaggaaccctcaagggcgtattcactccttgcaaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29329635 60 + 172585720 atgggcataaacacaggtggttagtaggaaccctcacgggcgtattcactcctggcaaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28990239 60 - 170955103 atgggcataaacacaggtggttagtaggaaccctcacgggcgtattcactcctggcaaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1967079 60 -   2996164 atgggcataaacacaggtggttagtaggaaccctcacgggcgtattcactcctggcaaca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1839053 60 -   2157725 atgggcataaacacaggtggttagtaggaaccctcacgggcgtattcactcctggcaaca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28289405 60 -  71996105 atgggcataaacacaggtggttagtaggaaccctcacgggcgtattcactcctggcaaca
i chlSab2.chr17            C 0 I 5232
s manLeu1.NW_012104165v1     1967391 60 +   2316924 atgggcataaacacaggtggttagtaggaaccctcacgggcgtattcactcctggcaaca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1848019 60 -   3067355 atgggcataaacacaggtggttagtaggaaccctcacgggcgtattcactcctggcaaca
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e saiBol1.JH378348            203808 2744 -    375362 I
e otoGar3.GL873742           1518363  2 -   2232465 I
e aotNan1.NW_018494050v1      143062 1923 -    285216 I
e cebCap1.NW_016108108v1      204772 819 -    373274 I
e calJac3.chr4             171378046 2337 - 171630274 I

a score=10010.000000
s hg38.chr6_GL000254v2_alt    134916 2 +   4827813 tt
s panTro5.chr6              29116038 2 + 175400573 tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29350372 2 + 173848474 tt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5150589 2 +   6154872 tt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74151661 2 + 122973662 tt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29329695 2 + 172585720 tt
i rheMac8.chr4             C 0 I 2237
s macFas5.chr4              28990299 2 - 170955103 tt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1967139 2 -   2996164 tt
i macNem1.NW_012011356v1   C 0 I 2237
s cerAty1.NW_012001495v1     1839113 2 -   2157725 tt
i cerAty1.NW_012001495v1   C 0 I 5493
s manLeu1.NW_012104165v1     1967451 2 +   2316924 tt
i manLeu1.NW_012104165v1   C 0 I 3752
s colAng1.NW_012115566v1     1848079 2 -   3067355 tt
i colAng1.NW_012115566v1   C 0 I 2241
e canFam3.chr35             25870850 854 +  26524999 I
e saiBol1.JH378348            203808 2744 -    375362 I
e otoGar3.GL873742           1518363 2 -   2232465 I
e aotNan1.NW_018494050v1      143062 1923 -    285216 I
e cebCap1.NW_016108108v1      204772 819 -    373274 I
e calJac3.chr4             171378046 2337 - 171630274 I
e chlSab2.chr17             28289465 5232 -  71996105 I

a score=6707.000000
s hg38.chr6_GL000254v2_alt    134918 18 +   4827813 ttttttttt---aattttttt
s panTro5.chr6              29116040 21 + 175400573 ttttttttttttaattttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29350374 19 + 173848474 ttttttttt--taattttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5150591 20 +   6154872 atttttttt-tagattttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74151663 14 + 122973662 ttttttttt-------ttttt
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              28990301 18 - 170955103 attatcatt--gtattttct-
i macFas5.chr4             C 0 I 2221
e canFam3.chr35             25870850 854 +  26524999 I
e saiBol1.JH378348            203808 2744 -    375362 I
e otoGar3.GL873742           1518363  2 -   2232465 I
e aotNan1.NW_018494050v1      143062 1923 -    285216 I
e cebCap1.NW_016108108v1      204772 819 -    373274 I
e calJac3.chr4             171378046 2337 - 171630274 I
e colAng1.NW_012115566v1     1848081 2241 -   3067355 I
e manLeu1.NW_012104165v1     1967453 3752 +   2316924 I
e chlSab2.chr17             28289465 5232 -  71996105 I
e cerAty1.NW_012001495v1     1839115 5493 -   2157725 I
e macNem1.NW_012011356v1     1967141 2237 -   2996164 I
e rheMac8.chr4              29329697 2237 + 172585720 I

a score=246234.000000
s hg38.chr6_GL000254v2_alt    134936 281 +   4827813 gagacagagtcttgctctgttgcccaggctggagtgcagtggcacgatctcggctcactgcaagttccgcctcctgggttcacgccattctcctgcctcagcttcctg-agtagctgggactacaggcgcccgccaccacatctggctaattttttgtatttttagtggagacggggtttcaccgtgttagccaggatggtctcgatctcctggcctcatactccacccgccttggcctcccaaagtgttgggattacaggcgtgagccaccgcgcctggcc
s panTro5.chr6              29116061 281 + 175400573 gagacagagtcttgctctgttgcccaggctggagtgcagtggcacgatcttggctcactgcaagttccgcctcctgggttcacgccattctcctgcctcagcttcctg-agtagctgggactacaggcgcccgccaccacatctggctaactttttgtatttttagtggagacggggtttcaccgtgttagccaggatggtctcgatctcctggcctcatactccacccgccttggcctcccaaagtgttgggattacaggcgtgagccaccgcgcccggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29350393 281 + 173848474 gagacagagtcttgctctgttgcccaggctggagtgcagtggcacgatcttggctcactgcaagttccgcctcctgggttcacaccattctcctgcctcagcttcctg-agtagctgggactacaggcgcccgccaccacatctggctaactttttgtatttttagtggagacggggtttcaccgtgttagccaggatggtctcgatctcctggcctcatactccacccgccttggcctcccaaagtgttgggattacaggcgtgagccaccgcgcccggcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5150611 281 +   6154872 gagacagagtcttgctctgtcgcccaggctggagtgcagtggcacgatctcggctcactgcaagttccgcctcctgggttcatgccattctcctgcctcagcttcctg-agtagctgggactacaggcgcccgccaccacatctggctaattttttgtatttttagtggagacagggtttcaccgtgttagccaggatggtctcgatctcctggcctcatactccacctgccttggcctcccaaagtgttgggattacaggcgtgagccaccgcgcccggcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74151677 282 + 122973662 gagacggggtctcgctcttttgcccagcccggggtgcagtggcgcaatctcggctcactgcaagctctgccttctgggttcacgccattctcctgcctcagccccccgaagtagctgggactacaggcgcccgccactgcgcccggctaattttttgtatttttagtagagacggggtttcaccgtgttaaccaggatggtctcgatatcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgagattacaggcgtgagccaccgcgcccaacc
i nomLeu3.chr1a            C 0 I 3931
e canFam3.chr35             25870850 854 +  26524999 I
e saiBol1.JH378348            203808 2744 -    375362 I
e otoGar3.GL873742           1518363   2 -   2232465 I
e aotNan1.NW_018494050v1      143062 1923 -    285216 I
e cebCap1.NW_016108108v1      204772 819 -    373274 I
e calJac3.chr4             171378046 2337 - 171630274 I
e colAng1.NW_012115566v1     1848081 2241 -   3067355 I
e manLeu1.NW_012104165v1     1967453 3752 +   2316924 I
e chlSab2.chr17             28289465 5232 -  71996105 I
e cerAty1.NW_012001495v1     1839115 5493 -   2157725 I
e macNem1.NW_012011356v1     1967141 2237 -   2996164 I
e macFas5.chr4              28990319 2221 - 170955103 I
e rheMac8.chr4              29329697 2237 + 172585720 I

a score=1993578.000000
s hg38.chr6_GL000254v2_alt    135217 3685 +   4827813 acaccttgcaacattattatcattgtgttttctcccactggcactattagggatgccactgtgggcttcaggcctggattacaaaaccacccatgtcttcttttcctagaagcagccacaatagccaattgataagtttccagccttgcccatgctatccatactataattattccagcaggtatgggtgctgccatctgttgataaagtaagtctctcggaactctatcaaggagcacagctgggaccactgcccctatggcagttatcatggcaccaccctccagtactataaaactaatccagtatggaggcatattccagctcagcttcaggtccctgtagccatcactgcttggcagatccactggtgttctcaggagcatgtctcaccatctgcctcaggagcatggctcagtgtctttgaggtaaccccgagagtttgtgggacatgtcttacaggccttgccaaccatttataaggagtgatgccatgtgtgctagtgggtgactcatttaaagtttgtatggctttatggagattcttagtccaggaacttaaagagccaacctgaaacagtgcacacatctgggtctttaacaggccattatttctttctgtaagtcctgcctctgttggattgtggtggtaagtggaacctccagtctatattttcttcttttttattttgagacagagtctcgctctgttgcccaggctggaatgcaatggtgcgatctcggctcactgcaacctccgcctcccggattaaagcaattctcccacctcagtctcccaagtagctgggactacacgcatgcgccaccacgcctggctaatttttgtatttttagtagagatggggtttcaccatgttggccagactgctctcaaactcctgacctcaagtgatctgcctgtctcagcctcccaaagtgctgggattacaggcatgacccaccgcacctggtccagtctatattttcttctgatgcccagtgttggatatctttgctatgcccatcaatgtaccagggcctagcagatattggcggggtacccttatatatggtggttggcctgatgggtggctccactgccatgttggctccctcccataactgagaccaaaaccctataggtaccattcccattagttgcttttgccccaaacctaaattcatccctgtgacatctctggtgattactaatacagcagtaga----gtctgtatgcttgggcttgtttcaccaatatttttgttttgtcaaatgcctcttgttctatttatgtcatctcattttttacctgtctttattagggtgtataatgggtggagtatttgtgccagatgaggaatgaatatcctccagtagcccagtaaacctaggaaaacctggagttgctctactgtctggagagcagactactatgctatcttatcaatgacggctttgggtatgtttcacatcttacccaaccaggtaactctcaggaatttgacaggcatgccaagcctctgtatatttttggggttgattttctatccctccttcaggctgtccaaaacagtttgtaggatagtctccaaatctgtaagagactct-agggtagcatgttatcattaatatagtgaaacagggagaccaaggcaggcaaagagattatagacagctcctgtgtaaccatactgtgagagatggcggggctttgcagatgcccctgtggtgacacctggaaagtccattcttggtcctcctaagtgtagaccaactg------tgaatcttcagctgaaagaatactggaaaaggtattaatgcagtcagtcacagaatggatacttcccagcttcggtactgcttgctctagcagttgagcaatattggataca-gctgcatgtacagggcgtaccactttgttcagctagcggtaatccaccatcatcttccaggcatcacctggcttcttcacaggccaaacaaggctgctgtaggggctctgggccagtctgacta-tttgtaccttatgtactttctggattgtttgggtgatttcagagtgcccccccaatagcagaaagtattgtttcatgttcattacctgcaaggatacaggtgcatatttggcctatcccctttttgctttctctgtggacctgatcgttatttttatccagctcactgaggtctgccaatg---cttccccccatcacagatttcatttcccactaagaggctcagaagtgttgt--ctgaaattggtgggttctatggtctcactgacttcaacaatgaaaccgcaaaccctcacagagagtgtcacagctctaaagttcgcgggcgtgga----gtctgtcccttctgatgttcagatgtgtccgcagtttcttttttctggtggggtcgtggtcttgctagctcaggagtgaagctgcaaacctttgcagtgagtgttatacctcataaaaacagcgtggacccaaagagtgaccagttggaaaatttattgcgcatagtgaaaaaaacaacgctttcacagtgcagaaaagacaacccagcgggttgctaatgctggttcgggcagcctgcttttattcttttatctggccccacccacatcctgctgattggtagagccgagtggcctgttttgtcagggcgctgactggtgcgtttacaatccctgggctagatacaaaggttctcctcgtccccattagattagttagatacagagtttccacatacaggttctccaaggccccaccagagcagctagatacagagtgtcgattggtgcactcacaaaccttgagctaaacacagggtgctgattggtgtgtttacaaaccttgagctagatacagagtgccgattggtgtatttacaatccgtgagctagacataaaggttctccacgtcctcaccagagcagctagatacagagtgtcgattggtgcactcacaaaccttgagctaaacacagggtgctgattggtgtgtttacaatccctgagctagataaaaagactctccacgtccccaccagactcaggagcccagctggcttcacgtagtggattccgcactggggctgcaggtggagctgcctgccagtcctgcgccctgcactcgcattcctcagcccttaggtggtcgatgggactgggtgccgtggagcagggggtggcgctcgtccgggaggctcgggccgcacaggagcccacggaggggggtgggaggctcaggcatggcgggctgcaggtcccgagccctgccccgtgggaaggcagccaaggcccggcgagaaatcgagcacagcgccggtgggccggcactgctgggggacccagtacacccttcgcagccactggcccgggtgctaagtcccccattgcccggggccagcagggctggctggctgctccgagtgcggggcccaccaagcccacgcccacccggaactccagctggcccgcaagtgcggcacacagccctggttcccgctcgtgtctctccctccacacctccctgcaagctgaaggagtgggctccggccttggccagcccagaaaggggctcccacagtgcagtgggggactgaagggctcctcaaatgccaccaaagtgggagcccaggcagcggaggtgccgagagcaagcgagggctctgaggactgccagcacgctgtcacctc--
s panTro5.chr6              29116342 3684 + 175400573 acaccttgcaacattattatcattgtgttttctcccattggcactattagggatgccactgtgggcttcaggcctggattacaaaaccacccatgtcttcttttcctagaagcagccataatagccaattgataagtttccagccttgcccatgctatccatactataattattccagcaggtatgggtgctgccatctgttgataaagtaagtctctcggaactctatcaaggagcacacctgggaccactgcccctatggcagttatcatggcaccaccctccagtactataaaactaatccagtatggaagcatattccagctcagctttaggtccctgtagccatcactgcttggcagatccactggtgttctcaggagcatgtctcaccatctgcctcaggagcatggctcagtgtctttgaggtaaccccgagagtttgtgggacatgtcttacaggccttgccaaccatttataaggagtgatgccatgtgtgctagtgggtgactcatttaaagtttgtatggctttatggagattcttagtccaggaacttaaagagccaacctgaaacagtgcacacatctgggtctttaacaggccattatttctttctgtaagtcctgcctctgttggattgtggtggtaagtggaacctccagtctatattttcttcttttttattttgagacagagtctcgctctgttgcccaggctggaatgcaatggtgcgatctcggctcactgcaacctccgcctcccggattaaagcaattctcccacctcagtctcccaagtagctgggactacacgcatgcgccaccacgcctggctaatttttgtatttttagtagagatggggtttcaccatgttggccagactgctctcaaactcctgacctcaagtgatctgcctgtctcagcctcccaaagtgctgggattacaggcatgacccaccgcacctagtccagtctatattttcttctgatgcccagtgttggatatctttgctatgcccatcaatgtaccagggcctagcagatattggcggggtacccttatatatggtgg----cctgatgggtggctccactgccatgttggctccctcccataactgagaccaaaaccctataggtaccattcccattagttgcttttgccccaaacctaaattcatccctgtgacatctctggtgattactaatacagcagtaga----gtctgtatgcttgggcttgtttcaccaatatttttgttttgtcaaatgcctcttgttctatttatgtcatctcattttttacctgtctttattagagtgtataatgggtggagtatttgtgccagatgaggaatgaatatcctccagtagcccagtaaacctaggaaaacctggagttgctctactgtctggagagcagactactatgctatcttatcaatgacggctttgggtatgtttcacatcttacccaaccaggtaactctcaggaatttgacaggcatgccaagcccctgtgtatttttggggttgattttctatccctccttcaggctgtccaaaacagtttgtagaatagtctccaaatctgtaagagactctgagggtagcatgttatcattaatatagtgaaacagggagaccaaggcaggcaaagagattatagacagctcctgtgtaaccatactgtgagagatggcggggatttgcagatgcccttgtggtgacacctggaaagtccattcttggccctcctaagtgtagaccaactggtcttgtgaatcttcagctgaaa---tactggaaaaagtattaatgcagtcagtcacagaatggatacttcccagcttcggtactgcttgctctagcagttgagcaatattggataca-ggtgcatgtacagggagtaccactttgttcagctagcggtaatccactatcatcttccaggcatcacctggcttcttcacaggccaaacaaggctgctgtaggggctctgggccagtct----a-tttgtaccttatatactttctggaatgtttgggtgatttcagagtgcccccccaatagcaggaagtattgtttcatgttcattacctgcaagtatacaggtgcatatttggcccatcccctttttgctttctctgtggacctgatagttgtttttatccagctcactgaggtctgccaatg---cttccacccgtcacagatttcatttcccactaagaggctcagaagtgttgtgtctgaaattggtgggttctatggtcttactgacttcaagaatgaaaccgcagaccctcacagggagtgtcgcagctctaaagttggcgggtctgga----gtctgtcccttctgatgttcagatgtgtccgcagtttctttcttctggtggggtcgtggtcttgctggctcaggagtgaagctgcaaacctttgcagtgagtgttacagctcataaaagcagcgtggacccaaagagtgaccaattgcaagatttattgcacagagtgaaaaaa-caaagcttccacagtgcagaagagacaatagagcaggttgctaatgctggttcgggcagcctgcttttattcttttatctggccccacccacatcctgctgattggtagagccgagtggcctgttttgtcagggcgctgactggtgcgtttacaatccctgggctagatacaaaggttctcctcgtccccattacattagttagatacagagtttccacacacaggttctccaaggccccaccagagcagctagatacagagtgtcgattggtgcactcacaaaccttgagctaaacacagggtgctgattggtgtgtttacgaaccttgagctagatacagagtgccgattggtgtatttacaatccgtgagctagacataaaggttctccacgtcctcaccagagcagctagatacagagtgtcgattggtgcactcacaaaccttgagctaaacacagggtgctgattggtgtgtttacaatccctgagctagatataaagactctccacgtccccaccagactcaggagcccagctggcttcacctagtggatcccgcactggggctgcaggtggagctgcctgccagtcctgcgccctgcactcgcattcctcagcccttaggtggtcgatgggactgggtgccgtggagcagggggtggcgctcgtccgggaggctcgggcctcacaggagcccacggaggtgggtgggaggctcaggcatggcgggctgcaggtcccaagccctgccccgtgggaaggcagccaaggcccggcgagaaatcgagcgcagcgccggtgggccggcactgctgggggacccagtacaccctccgcagccactggcccgggtgctaagtcccccattgtccggggccagcagagctggctggctgctccgagtgcggggcccaccaagcccacgcccacccggaactccagctggcccgcaagtgcggcacacagccccggttcccgctcgagtctctctctccacacctccctgcaagctgaaggagtgggctccggtcttggccagcccagaaaggggctcccacagtgcagtgggggactgaagggctcctcaaatgccaccaaagtgggagcccaggcagcggaggtgcggagagcaagcgagggctctgaggactgccagcacactgtcacctctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29350674 3681 + 173848474 acaccttgcaacattattatcattgtgttttctcccattggcactattagggatgccactgtgggcttcaggcctggattacaaaaccacccatgtcttattttcctagaagcagccataatagccaattgataagtttccagccttgcccatgctatccatactataattattccagcaggtatgggtgctgccatctgttgataaagtaagtctctcggaactctatcaaggagcacacctgggaccactgcccctatggcagttatcatggcaccaccctccagtactataaaactaatccagtatggaagcatattccagctcagcttcaggtccctgtagccatcactgcttggcagatccactggtgttctcaggagcatgtctcaccatctgcctcaggagcatggctcagtgtctttgaggtaaccccgagagtttgtgggacatgtcttacaggccttgccaaccatttataagaagtgatgccatgtgtgctagtgggtgactcatttaaagtttgtatggctttatggagattcttagtccaggaacttaaagagccaacctgaaacagtgcacacatctgggtctttaacaggccattatttctttctgtaagtcctgcctctgttggattgtggtggtaagtggaacctccagtctatattttcttcttttttattttgagacagagtctcgctctgttgcccaggctggaatgcaatggtgcgatctcggctcactgcaacctccgcctcccggattaaagcaattctcccacctcagtctcccaagtagctgggactacacgcatgcgccaccacgcctggctaatttttgtatttttagtagagatggggtttcaccatgttggccagactgctctcaaactcctgacctcaagtgatctgcctgtctcagcctcccaaagtgctgggattacaggcatgacccaccgcacctagtccagtctatattttcttctgatgcccagtgttggatatctttgctatgcccatcaatgtaccagggcctagcagatattggcggggtacccttatatatggtgg----cctgatgggtggctccactgccatgttggctccctcccataactgagaccaaaaccctataggtaccattcccattagttgcttttgccccaaacctaaattcatccctgtgacatctctggtgattactaatacagcagtaga----gtctgtatgcttgggcttgtttcaccaatatttttgttttgtcaaatgcctcttgttctatttatgtcatctcattttttacctgtctttattagagtgtataatgggtggagtatttgtgccagatgaggaatgaatatcctccagtagcccagtaaacctaggaaaacctggagttgctctactgtctggagagcagactactatgc-----tatcaatgacggctttgggtatgtttcacatcttacccaaccaggtaactctcaggaatttgacaggcatgccaagcccctgtgtatttttggggttgattttctatccctccttcaggctgtccaaaacagtttgtaggatagtctccaaatctgtaagagactctgagggtagcatgttatcattaatatagtgaaacagggagaccaaggcaggcaaagagattatagacagttcctgtgtaaccatactgtgagagatggcggggatttgcagatgcccttgtggtgacacctggaaagtccattcttggccctcctaagtgtagaccaactggtcttgtgaatcttcagctgaaa---tactggaaaaagtattaatgcagtcagtcacagaatggatacttcccagcttcggtactgcttgctctagcagttgagcaatgttggataca-ggtgcatgtacagggagtaccactttgttcagctagcggtaatccactatcatcttccaggcatcacctggcttcttcacaggccaaacaaggctgctgtaggggctctgggccagtct----a-tttgtaccttatatactttctggaatgtttgggtgatttcagagtgcccccccaatagcaggaagtattgtttcatgttcattacctgcaagtatacaggtgcatatttggcccatcccctttttgctttctctgtggacctgatagttgtttttatccagctcactgaggtctgccaatgcttcttccccctgtcacagatttcatttcccattaagaggctcagaagtgttgtgtctgaaattggtgggttctatggtcttactgacttcaagaatgaaaccgcaaaccctcacagggagtgtcgcagctctaaagttggcggatctgga----gtctatcccttctgatgttcagacgtgtccgcagttt-tttcttctggtggggtcgtggtcttgctggctcaggagtgaagctgcaaacctttgcagtgagtgttacagctcataaaagcagcgtggacccaaagagtgaccagttgcaagatttattgcacagagtgaaaaaa-caaagcttccacagtgcagaagaaacaatagagcaggttgctaatgctggttcgggcagcctgcttttattcttttatctggccccacccacatcctgctgattggtagagccgagtggcctgttttgtcagggcgctgactggtgcgtttacaatccctgggctagatacaaaggttctcctcgtccccattacattagttagatacagagtttccacacacaggttctccaaggccccaccagagcagctagatacagagtgtcgattggtgcactcacaaaccttgagctaaacacagggtgctgattggtgtgtttacgaaccttgagctagatacagagtgccgattggtgtatttacaatccgtgagctagacataaaggttctccacgtcctcaccagagcagctagatacagagtgtcgattggtgcactcacaaaccttgagctaaacacagggtgctgattggtgtgtttacaatccctgagctagatataaagactctccacgtccccaccagactcaggagcccagctggcttcacctagtggatcccgcactggggctgcaggtggagctgcctgccagtcctgcgccctgcactcgcattcctcagcccttaggtggtcgatgggactgggtgccgtggagcagggggtggcgctcgtccgggaggctcgggcctcacaggagcccacggaggtgggtgggaggctcaggcatggcgggctgcaggtcccaagccctgccccgtgggaaggcagccaaggcccggcgagaaatcaagcgcagcgccggtgggccggcactgctgggggacccagtacaccctccacagccactggcccgggtgctaagtcccccattgtctggggccagcagggctggctggctgctccgagtgcggggcccaccaagcccacgcccacccggaactccagctggcccgcaagtgcggcacacagccccggttcccgctcgagtctctccctccacacctccctgcaagctgaaggagtgggctccggtcttggccagcccagaaaggggctcccacaatgcagtgggggactgaagggctcctcaaatgccaccaaagtgggagcccaggcagcggaggtgcggagagcaagcgagggctctgaggactgccagcacgctgtcacctctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5150892 3687 +   6154872 acaccttgcaacattattatcattgtgttttctcccattggcactattagggatgacactgtgggcttcaggcttggattacaaaaccacccatgtcttcttttcctagaagcagccataatagccaattgataagtttccagccttgcccatgctatccatactataattattccagcaggtatgggtgctgccatctgttgataaagtaagtctctcggaactctatcaaggagcacagctgggaccactgcccctatggcagttatcatggcaccaccctccagtactataaaactaatccagtatggaggcatattccagctcagcttcaggtccctgtagccatcactgcttggcagatccactggtgttctcaggagcatgtctcaccatctgcctcaggagcatggcttagtgtctttgaggtaaccccgagagtttgtgggacatgtcttacaggccttgccaaccatttataaggagtgatgccatgtgtgctagtgggtgactcatttaaagtttgtatggctttatggagattcttagtccaggaacttaaagagccaacctgaaacagtgcacacatctgggtctttaacaggccattatttctttctgtaagtcctgcctctgttggattgtggtggtaagtggaaactccagtctatattttcttcttttttattttgagacagagtctcgctctgttgcccaggctggaatgcaatggcgcgatctcggctcactgcaacctccgcctcccggattaaagcaattctcccacctcagtctcccaagtagctgggactacacgcatgcgccaccacgcctagctagtttttgtatttttagtagagatggggtttcaccatgttggccagactgctctcaaactcctgacctcaagtgatctgcctgtctcagcctcccaaagtgctgggattacaggcatgacccaccgcacctggtccagtctatattttcttctgacgcccagtgttggatatctttgctatgcccatcagtgtaccagggcctagcagatattggcagggtacccttatatatggtggttggcctgatgggtggctccactgccatgttggctccctcccataactgagaccaaaaccctataggtaccattcccattagttgcttttgccccaaacctaaattcatccctgtgacatctctggtgattactaatacagcagtagagtctgtctgtatgcttgggcttgtttcaccaatatttttgttttgtcaaatgcctcttgttctatttatgtcatctcattttttacctgtctttattagggtgtataatgggtggagcatttgtgccagatgaggaatgaatatcctccagtagcccagtaaacctaggaaaacctggagttgctctactgtctggagagcagactactatgctatcttatcaatgacagctttgggtatgtttcacatcttacccaaccaggtaactctcaggaatttgacaggcatgccaagcccctgtatatttttggggttgattttctatcccttcttcaggctgtccaaaacagtttgtaggatagtctccaaatccgtaacagactctgagggtagcatgttatc---aatatagtgaaacagggagaccaaggcaggcaaagagattatagacagctcctgtgtaaccatactgtgagagatggcggggctttgcagatgcccttgtggtgacacctggaaagtccattcttggtcctcctaagtgtagaccaactggtcttgtgaatcttcagctgaaagaatactggaaaaggtattaatgcagtcagtcacagaatggatacttcccagctt-ggtactgcttgctctagcagttgagcaatattggatacagggggcatatacagggagtaccacgttgttcagctagcggtaatccaccatcatcttccaggcatcacctggcttcttcacaggccaaacaacgttgctgtaggggctctgggccagtct----attttgtaccttatgtactttatggattgtttggatgatttcagagtgcccccccaatagcaggaagtattgtttcacgttcattacctagaagtatacaggtgcatatttggcccatcccctttttcctttctctgtggacctgatcgttgtttttatccagctcactgaggtctgccaatg---cttccccccatcacagatttcatctcccactaagaagctcagaagtgttctgtctgaaattggcgggttctatggtctcactgacttcaagaatgaaaccgcggaccctcacagtgagtgtcacagctctaaagttggcgggtctggagtctgtctgtcccttctgatgttcagatgtgtctgcagtttgttttttccggtggggtcgtgatctcactggctcagaaatgaagctgcaaactttcccagcgagtgttacagctcataaaagcag-atggacccaaa-agtgaccaattggaa-acttattgcacagagtgaaaaaa-caaagcttccaccgtgtagaagaga-accggagcgggttgctaatactagctcgggcagcctgcttttattcttttatctggccccacccacatcctgctgattggtagagccgagtggcctgttttgtcagggcgctgattggtgcgtttacaatccctgggctagatacaaaggttctcctcgtccccatcagattagttagatac--agtttccacacacaggttctccaaggccccaccagagcagctagatacagagtgtcgattggtgcactcacaaaccttgagctaaacacagggtgctgattggtgtgtttacaaaccttgagctagatacagagtgccgattggtgtatttacaatccgtgagctagacataaaggttctccacgtcctcaccagagcagctagatacagagtgtcaattggtgtactcacaaaccttgagctaaacacagggtgctgattggtgtgtttacaatcc--gagctagatataaagactctccacgtccccaccagactcaggagcccagctggcttcacctagtggatcccgcactggggctgcaggtggagctgcctgccagtcctgcgcggtgcgctcgcattcctcagcccttaggtggtcgatgggactgggtgccgtggagca-ggggtggcgctcgtctgggaggctcgggccgcacaggagcccacggagg-gggtgggaggctcaggcatggcgggatgcaggtcctgatccctgccccgtgggaaggcagccaaggcccggcgagaaatcgagcgcagcgccggtgggccggcactgctgggggacccagtacaccctccgcagccactggcccgggtgctaagtcccccattgcctggggccagcagggctggccggctgctctgagtgcggggcccaccaagcccacgcccacccggaactccagctggcccgcaagtgcggcacacagcccgggttcccgctcgtgtctctccctccacacctccctgcaagctgaaggagtgggctccggccttgaccagcccagaaaggggttcccacagtgcagtgggggactgaagggctcctcaaatgccaccaaagtgggagcccaggcagcggaggtgccgagaacaagcgagggctctgaggactgccagcacgctgtcacctctc
i gorGor5.CYUI01015250v1   C 0 C 0
e canFam3.chr35             25870850  854 +  26524999 I
e saiBol1.JH378348            203808 2744 -    375362 I
e otoGar3.GL873742           1518363    2 -   2232465 I
e aotNan1.NW_018494050v1      143062 1923 -    285216 I
e cebCap1.NW_016108108v1      204772  819 -    373274 I
e calJac3.chr4             171378046 2337 - 171630274 I
e colAng1.NW_012115566v1     1848081 2241 -   3067355 I
e manLeu1.NW_012104165v1     1967453 3752 +   2316924 I
e chlSab2.chr17             28289465 5232 -  71996105 I
e cerAty1.NW_012001495v1     1839115 5493 -   2157725 I
e macNem1.NW_012011356v1     1967141 2237 -   2996164 I
e macFas5.chr4              28990319 2221 - 170955103 I
e rheMac8.chr4              29329697 2237 + 172585720 I
e nomLeu3.chr1a             74151959 3931 + 122973662 I

a score=2548.000000
s hg38.chr6_GL000254v2_alt    138902 1 +   4827813 a
s panTro5.chr6              29120026 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29354355 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5154579 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29331934 1 + 172585720 a
i rheMac8.chr4             I 2237 C 0
s macFas5.chr4              28992540 1 - 170955103 a
i macFas5.chr4             I 2221 C 0
s macNem1.NW_012011356v1     1969378 1 -   2996164 a
i macNem1.NW_012011356v1   I 2237 C 0
s colAng1.NW_012115566v1     1850322 1 -   3067355 a
i colAng1.NW_012115566v1   I 2241 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e saiBol1.JH378348            203808 2744 -    375362 I
e otoGar3.GL873742           1518363 2 -   2232465 I
e aotNan1.NW_018494050v1      143062 1923 -    285216 I
e cebCap1.NW_016108108v1      204772 819 -    373274 I
e calJac3.chr4             171378046 2337 - 171630274 I
e manLeu1.NW_012104165v1     1967453 3752 +   2316924 I
e chlSab2.chr17             28289465 5232 -  71996105 I
e cerAty1.NW_012001495v1     1839115 5493 -   2157725 I
e nomLeu3.chr1a             74151959 3931 + 122973662 I

a score=3638146.000000
s hg38.chr6_GL000254v2_alt    138903 1231 +   4827813 gtgtgaccaatgcccta---tattataaatgccatttttt-gaattggaaatgatccagacattcaacaagtacttaaaacaattttaaggttttaaactacacaaaaagttcacccgtaagcatttatctcttacatttactcaatttattcatttttagcagtttacctagattactcattggaacgaagacattagacaaagttactcatcattctgaattattttttctgttaaactgtgaatgtcaggtgttcacctaggcaagaactttaaagttaaacacatgggcatttttgccaataactcaggaattttagctgttttcactgacctaacaatattaaattagtcatacttaccaaaaaatcacacaaataaagatcattctgtttttggctgggtttacagacttatgatctttaggtcaaaccctgacaccttaaaatatctagcagaggcaaatgtaaaactaattggtaaactgagacaaaaacgtatgctgacaattc-aaggacatttctatttttattttaccaataattttaaagccagattatttattaaagattactaaattcatatgaacttgaaaagcatttggactt----tatgagtactcatttatgtataagccatttggtagtatgctaggcataacacataatatatatacataca----cataaacacatttaagcatgtatctatacacacaaaccaatatccaacagcttttacttggaactctagccatgagacaacatc-ataaatttactattttacaaaagatagttggatcaggccgggtgcagtggctcaaacctgtaatcccagcactttgggaggccgaggcaggaggatcacctgagttcaggagttggagaccaggctggctaacatggtgaaaccccgtttctactaaaaatacaaaaaagtagctgggagtggtggcgcacccctgtaatcccagcttctcaagaggctcaggcaggagaatcacttgaacttgggagatggaggttgcactgagccgagatctcaccgttgcactccagcttgggcaacaag-agtg-aaactcc---atctc-aaaaaaaaaaaaa-aggaaaaaaaaaaaagaaaagctagatccaaattatttttcacaaaattgagacctgtccacaagactagactttgtttgcactgataggtaatccaataaagactgtggaacacaattttgggtaaagcagtttctata
s panTro5.chr6              29120027 1240 + 175400573 gtgtgaccaatgcccta---tattataaatgccatttttt-gaattggaaatgatccagacattcaacaagtacttaaaacaattttaaggttttaaactacacaaaaagttcacccgtaagcatttatctcttacatttactcaatttattcatttttagcagtttacctagattactcatgggaacgaagacattagacaaagttactcatcattctgaattattttttctgttaaactgtgaatgtcaggtgttcacctaggcaagaactttaaagttagacacatgggcatttttgccaataactcaggaattttagctgttttcactgacgtaacaatattaaattagtcatacttaccaaaaaatcacacaaacaaagatcattctgttttcggctgggtttacagacttatgacctttatgtcaaaccctgacaccttaaaatatctagcagaggcaaatgtaaaactaattggtaaactgagacaaaaacgtatgctgacaattc-aaggacatttctatttttattttaccaataattttaaagccagattatttattaaagattactaaattcatatgaacttgaaaagcatttggacttaatttatgagtactcatttatgtataagccatttggtagtatgctaggcataacacataatatacatacatacatacacataaacacatttaagcatgtatctatacacacaaaccaatatccaacagcttttacttggaactctagccatgagacaacatc-ataaatttattattttacaaaagatagttggatcaggccgggtgcagtggctcaaacctgtaatcccagccctttgggaggccgaggcgggaggatcacctgaggtcaggagttggagaccaggctggctaagatggtgaaaccccgtttctactaaaaatacaaaaaagtagctgagagtggtggcgcacccctgtaatcccagcttctcaagaggttcaggcaggagaatcacttgaacttgggagatggaggttgcactgagccgagatctcaccgttgcactccagcttgggcaacaag-agtg-aaactcc---atctc-aaaaaaaaaaaaagaaaaaaaaaaaaaaaggaaagctagatccaaattatttttcacaaaattgagacctgtccacaagactagactttgtttgcactgataggtaatccaataaagactgtggaacacaattttgggtaaagcagtttctata
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29354356 1241 + 173848474 gtgtgaccaatgcccta---tattataaatgccatttttt-gaattggaaatgatccagacattcaacaagtacttaaaacaattttaaggttttaaactacacaaaaagttcacccgtaagcatttatctcttacatttactcaatttattcatttttagcagtttacctagattactcatgggaacgaagacattagacaaagttactcatcattctgaattattttttctgttaaactgtgaatgtcaggtgttcacctaggcaagaactttaaagttagacacatgggcatttttgccaataactcaggaattttagctgttttcactgacctaacaatattaaattagtcatacttaccaaaaaatcacacaaacaaagatcattctgtttttggctgggtttacagacttatgacctttatgtcaaaccctgacaccttaaaatatctagcagaggcaaatgtaaaactaattggtaaactgagacaaaaacgaatgctgacaattc-aaggacatttctatttttattttaccaataattttaaagccagattatttattaaagattactaaattcatatgaacttgaaaagcatttggacttaatttatgagtactcatttatgtataagccatttggtagtatgctaggcataacacataatatacatacataca----cataaacacatttaagcatgtatctatacacacaaaccaatatccaacagcttttacttggaactctagccatgagacaacatc-ataaatttattattttacaaaagatagttggatcaggccaggtgcagtggctcaaacctgtaatcccagccctttgggaggccgaggcgggaggatcacctgaggtcaggagttggagaccaggctggctaagatggtgaaaccccgtttctactaaaaatacaaaaaagtagctgagagtggtggcgcacccctgtaatcccagcttctcaagaggttcaggcaggagaatcacttgaacttgggagatggaggttgcactgagccgagatctcaccgttgcactccagcttgggcaacaagaagtgaaaactccaatactac-aaaaaaaaaaaaaagaaaaaaaaaaaaagaaaaagctagatccaaattatttttcacaaaattgagacctgtccacaagactagactttgtttgcactgataggtaatccaataaagactgtggaacacaattttgggtaaagcagtttctata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5154580 1225 +   6154872 gtgtgaccaatgccgta---tattataaatgccatttttt-gaattggaaatgatccagacattcaacaagtacttaaaacaa-tttaaggttttaaactacacaaaaagttcacccgtaagcatttatctcttacatttactc----tattcatttttagcagtttacctagattactcatgagaacgaagacattagac-aagttactcatcattctgaattattttttctgttaaactgtgaatgtcaggtgttcacctaggcaagaactttaa------acacatgggcatttttgccaataactcaggaagtttagctgttttcactgacctaacaatattaaattagtcatacttaccaaaaaatcacacaaacaaagatcattctgtttttggctgggtttacagacttatgacctttatgtcaaaccctgacaccttaaaatatctagcagaggcaaatgtaaaactaattggtaaactgagacaaaaacgtatgctgacaattc-aaggacatttctatttttattttaccaataattttaaagccagattatttattaaagattactaaattcatatgaacttgaaaagcatttggacttaatttatgagtactcatttatgtataagccatttggtagtatgctaggcataacacataatatacatacataca----cacaaacacatttaatcatgtatctatacacacaaaccaatatccaacagcttttacttggaaccctagccatgagacaacatc-atcaatttattattttacaaaagatagttggatcaggccaggtgcagtggctcaaacctgtaatcccggcactttgggaggccgaggcaggaggatcacctgaggtcaggagttggagaccaggctggctaacatggtgaaaccccgtttctactaaaaatacaaaaaagtagctgggagtggtggcgcacccctgtaatcccagcttctcaagaggctcaggcaggagaatcacttgaacttgggagatggaggttgcgttgagccgagatctcaccgttgcactccagcttgggcaacaag-agtgaaaactcc---atctc-aaaaaaaaaaaaaagaaaaaaaaaaaaaagaaaagctagatccaaattatttttcacaaaattgagacctgtccacaagactagactttgtttgcactgataggtaatccaataaagactgtggaacacaattttgggtaaagcagtttctata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74155890 1188 + 122973662 gtgtgaccaatgcccta---tatt----ttgccatttttt-gaattggaaatgatccagccattcaataagtacttaaaacaattttgaggttttaaactacacaaaaacttcacctgtaagcatttatctcttacatttactcatttt----atttttagcag--tacgtagattactc--gggaatgaaggcagtagacaaagttac---tcattctgaattattttt---------ctgttaatgtcaggtgttcacctacgcaagaacttgaaagttaaacacatgggtatttttgccaataactcaggaagtttagctgttttcactgacctaacaatattaaattagtcatgcttaccaaaaaatcacac----aaagatcattctgtttttggctgggtttacagacttacgacctttatgtcaaaccctgacaccttaaaatatctagcagaggcaaatgtaaaactaatcagtaaactgaaacaaaaacgtatgctgacaattc-gaagaca-ttctatttttaatttagcaataattttaaagctaga----ttattaaagattactaaattcatatgaacttgaaaagcatttggacttaatttatgagtactcatttatgtataagccatttggtagtatgctaggcgtaacac--aatgtacatacataca----cataaacacatttaagcatgtatctatacacacaaaccaatatccaacagcttttacttggaactctagccatgagacaacatcaaaaaatttattattttacaaaagatagttggatcaggccgggtgcagtggctcaaacctgaaatcccagcactttaggaggccgaggcgggaggatcatctgaggtcgggagttggagaccaggctggctaacatggtgaaaccccatttctactaaaaatacaaaaaaatagctgggagtggtggtgcacccctgtaatcccagcttctcaggaggctcaggcaggagtattacttgaacttgggagatggaggttgcaatgagccgagttctcaccattgcacttcagcttgggcaacaag-agtg-aaactcc---gtctc-aaaaaaagaaaga--------------aaaaaaagctagatccaaattatttttcacaaaattgagacctgtccacatgactagagtttgtttgcactgataggtaatccaataaaggctgtggaacaaaattttgggtaaagcagtttctata
i nomLeu3.chr1a            I 3931 C 0
s rheMac8.chr4              29331935 1211 + 172585720 gtgtgaccaatgcccta---tattataaatgccatttttttaaattggaaatgacccagacattcaacaagtacttaaaacaattttaagcttttaaactacacaaaaagttcacctgtaagcatttatctcttacatttactcaatttattcatttttggcagtttacctagattactcatgggaacgaagacattaaacaaagttactcatcattctgaattattttt-ctgttaaactgtgaatgtcaggtgttcacctaggcaagaactttaa------acacatgggcatttttgccaataactcaggaagtttagctgttttcactgagctaacaatattaaattagtcatacttaccaaaaaatcacac----aaagatcattctgtttttggctgggtttacagacttatggcctttatgtcaaaccctgacaccttaaaatatctagcagaggcaaatgtaaaactaattggtaaactgagacaaaaacgtatgctgacaattctgaagacatttctatttttattttaccaataattttaaagccagattatttattaaatattactaaattcatatgaacttgaaaagcatttggacttaatttatgagtactcatttatgtataagccatttggtagtatgctaggcataacacataatatacatacataca----cataaacacatttaagcatgtatatatacacacaaaccaatatccaacagcttttacttggaaccctagccatgagacaacatc-ataaatttattattttacaaaagatagctggatcaggccgggtacagtggctcaaacctgtaatcctagcactttgggaggctgaggcgggaggatcacctgaggtgaggagttggagaccagcctggctaacgtggtgaaaccccatttctactaaaaatacaaaaaattagctgggagtggtgacacactcctgtaatcccagcttctca-gaggctcaggtaggagaatcgcttgaacttgggagacggaggttgcagtgagctgagatcttacaattgcactccagattgggcaacaag-agca-aaactcc---gtctcaaaaaaaaacaaaa----------------aaaaagctggatccaaattatttttcacaaaattgagacctgttcacatgactaaactttgtttgcactgataggtaatccaataaagactgtggaacaaaattttgggtaaaccagcttctata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28992541 1210 - 170955103 gtgtgaccaatgcccta---tattataaatgccatttttttaaattggaaatgacccagacattcaacaagtacttaaaacaattttaagcttttaaactacacaaaaagttcacctgtaagcatttatctcttacatttactcaatttattcatttttggcagtttacctagattactcatgggaacgaagacattaaacaaagttactcatcattctgaattattttt-ctgttaaactgtgaatgtcaggtgttcacctaggcaagaactttaa------acacatgggcatttttgccaataactcaggaagtttagctgttttcactgagctaacaatattaaattagtcatacttaccaaaaaatcacac----aaagatcattctgtttttggctgggtttacagacttatggcctttatgtcaaaccctgacaccttaaaatatctagcagaggcaaatgtaaaactaattggtaaactgagacaaaaacgtatgctgacaattctgaagacatttctatttttattttaccaataattttaaagccagattatttattaaatattactaaattcatatgaacttgaaaagcatttggacttaatttatgagtactcatttatgtataagccatttggtagtatgctaggcataacacataatatacatacataca----cataaacacatttaagcatgtatatatacacacaaaccaatatccaacagcttttacttggaaccctagccatgagacaacatc-ataaatttattattttacaaaagatagctggatcaggccgggtacagtggctcaaacctgtaatcctagcactttgggaggctgaggcgggaggatcacctgaggtgaggagttggagaccagcctggctaacgtggtgaaaccccatttctactaaaaatacaaaaaattagctgggagtggtgacacactcctgtaatcccagcttctca-gaggctcaggtaggagaatcgcttgaacttgggagacggaggttgcagtgagctgagatcttacaattgcactccagattgggcaacaag-agca-aaactcc---gtctc-aaaaaaaacaaaa----------------aaaaagctggatccaaattatttttcacaaaattgagacctgttcacatgactaaactttgtttgcactgataggtaatccaataaagactgtggaacaaaattttgggtaaaccagcttctata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1969379 1210 -   2996164 gtgtgaccaatgcccta---tattataaatgccattttttaaaattggaaatgacccagacattcaacaagtacttaaaacaattttaagcttttaaactacacaaaaagttcacctgtaagcatttatctcttatatttactcaatttattcatttttggcagtttacctagattactcatgggaacgaagacattaaacaaagttactcatcattctgaattattttt-ctgttaaactgtgaatgtcaggtgttcacctaggcaagaactttaa------acacatgggcatttttgccaataactcaggaagtttagctgttttcactgagctaacaatattaaattagtcatacttaccaaaaaatcacac----aaagatcattctgtttttggctgggtttacagacttatggcctttatgtcaaaccctgacaccttaaaatatctagcagaggcaaatgtaaaactaattggtaaactgagacaaaaacgtatgctgacaattctgaagacacttctatttttattttaccaataattttaaagccagattatttattaaatattactaaattcatatgaacttgaaaagcatttggacttaatttatgagtactcatttatgtataagccatttggtagtatgctaggcataacacataatatacatacataca----cataaacacatttaagcatgtatatatacacacaaaccaatatccaacagcttttacttggaaccctagccatgagacaacatc-ataaatttattattttacaaaagatagctggatcaggcagggtacagtggctcaaacctgtaatcctagcactttgggaggctgaggcgggaggatcacctgaggtgaggagttggagaccagcctggctaacgtggtgaaaccccatttctactaaaaatacaaaaaattagctgggagtggtgacacactcctgtaatcccagcttctca-gaggctcaggtaggagaatcgcttgaacttgggagacggaggttgcagtgagctgagatcttacaattgcactccagattgggcaacaag-agca-aaactcc---gtctc-aaaaaaaacaaaa----------------aaaaagctggatccaaattatttttcacaaaattgagacctgttcacatgactaaactttgtttgcactgataggtaatccaataaagactgtggaacaaaattttgggtaaaccagcttctata
i macNem1.NW_012011356v1   C 0 C 0
s colAng1.NW_012115566v1     1850323 1201 -   3067355 gtgtgaccaatgccctatattattataaatgccgtttttttaaattggaaatgacccagacattcaacaagtacttaaaacaattttaagcttttaaactacacaaaaagttcacctgcaagcatttatctcttacacttactcaatttattaatttttagcagtttacctagattactcatgggaacgaagacattaaacaaagttactcatcattctgaattattttt-ctgttaaactgtgaatgtcaggtgttcacctaggcaagaactttaa------acacatgggcatttttgccaataactcaggaagtttagctgttttcactgagctaacaatattaaattagtcatacttatcaaaaaatcacac----aaagatcattctgtttttggctgggtttacagacttatggcctttatgtcaaaccctgacaccttaaaatatctagcagaggcaaatgtaaaactaattggtaaactgagacaaaaacgtatgctgacaattctgaagacatttctattttcattttaccaataattttaaagccagattatttattaaatattactaaattcatatgaacttgaaaagcatttggacttaatttatgagaactcatttatgtataagccatttggtagtatgctaggcaaaacacgtaatatacatacat------------acacatttaagcatgtatatatacacacaaatcaatatccaacagcttttacttggaaccatagccaggagacaacatc-ataaatttattattttacaaaagatagctggatcaggccgggtacagtggctcagacctgtaatcctagcactttgggaggccgaggcgggaggatcagctgaggtgaggagttggagaccagcctggctaacatggtgaaaccccgtttctactaaaaacacaaaaaattagctgggagtggtgacgcactcctgtaatcccagcttctca-gaggctcaggtaggagaatcgcttgaacttgggagacggaggttgtagtgacctgatatcttacaattgcactccagattggtcaacaag-agcg-aaactcc---gtctc-aaaaaaa--caaa----------------aaaaagctggatccaaattatttttcacaaaattgagacctgttcacatgactaaac--tgtttgcactgataggtaatccaataaagactgtgcaacaaaattttgggtaaaccagtttctata
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             25870850  854 +  26524999 I
e saiBol1.JH378348            203808 2744 -    375362 I
e otoGar3.GL873742           1518363    2 -   2232465 I
e aotNan1.NW_018494050v1      143062 1923 -    285216 I
e cebCap1.NW_016108108v1      204772  819 -    373274 I
e calJac3.chr4             171378046 2337 - 171630274 I
e manLeu1.NW_012104165v1     1967453 3752 +   2316924 I
e chlSab2.chr17             28289465 5232 -  71996105 I
e cerAty1.NW_012001495v1     1839115 5493 -   2157725 I

a score=967477.000000
s hg38.chr6_GL000254v2_alt    140134 275 +   4827813 gcagtttgatttttaaaatcctcatttatccacatccccttttttctgtgcttcaaatgagtttcattgtttacattttagtaagaactggctgtactgtagagaaaagtaaaatctccgagtggctttgaattagtgagttttatttcaacaccaatagcttaataatggcatatttgagtgttggggtgatcagacccaacaccaggtcgtgggggcgacaaagtcctgcagagtcacagaaatgagaaaaagacagtttgagagagaaagtg
s panTro5.chr6              29121267 275 + 175400573 gcagtttgatttttaaaatcctcatttatccacatccccttttttctgtgcttcaaatgagtttcattgtttactttttagtaagaactggctgtactgtagagaaaagtaaaatctccgagtggctttgaattagtgagttttatttcaacaccaatagcttaataatggcatatttgagtgttggggtgatcagacccaacaccaggtcgtgggggcgacaaagtcctgcggagtcacagaaatgagaaaaagacagtttgagagagaaagtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29355597 275 + 173848474 gcagtttgatttttaaaatcctcatttatccacatccccttttttctgtgcttcaaatgagtttcattgtttactttttagtaagaactggctgtactgtagagaaaagtaaaatctccgagtggctttgaattagtgagttttatttcaacaccaatagcttaataatggcatatttgagtgttggggtgatcagacccaacaccaggtcgtgggggcgacaaagtcctgcggagtcacagaaatgagaaaaagacagtttgagagagaaagtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5155805 274 +   6154872 gcagtttgatgtttaaaatcctcatttatccacatccccttttttctgtgcttcaaatgagtttcattgtttacattttagtaagaactggctgtactgtagagaaaagtaaaatctccgagtggttttgaattagtgaattttatttcaacaccaatagcttaataatggcatatttgagtgttggggtgatcagacccaacaccaggtcgt-ggggcgacaaagtcctgtggagtcacagaaatgagaaaaagacagtttgagagagaaactg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74157078 275 + 122973662 gcagtttgatgtttaaaatcctcatttatccccatccccttttttctctgcttcaagtgagtttcattgtttacattttagtaacaactggctgtactgtagagaaaagtaaaatctccaagtgggtttgaattagtgagttttatttcaacaccaatagcttaataatggcatatttgagtgttgggctgatcagacccaacaccaggtcgtgggcgcgacgaagtcctgcggagccaaagaaatgagaaaaagacagtttgagagagaaagtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29333146 266 + 172585720 gcagtttgatttttcaaatcctcatttatcc-catcccc--ttttctctgcttcaaatgagtttcattgtttacattttagtaagaactggctatactgt-----gaagtaaaatctccaagtggctttgaattagtgagttttatttcaataccagtagcttaataatggcatattctaatgttggggtgatcacacccaacaccaggtcgtgggtgcaacaaagtccggcagagccaaaagaatgagaaaaa-acagtttgagagagaaagtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28993751 266 - 170955103 gcagtttgatttttcaaatcctcatttatcc-catcccc--ttttctctgcttcaaatgagtttcattgtttacattttagtaagaactggctatactgt-----gaagtaaaatctccaagtggctttgaattagtgagttttatttcaacaccagtagcttaataatggcatattctaatgttggggtgatcacacccaacaccaggtcgtgggggcaacaaagtccggcagagccaaaggaatgagaaaaa-acagtttgagagagaaagtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1970589 266 -   2996164 gcagtttgatttttcaaatcctcatttatcc-catcccc--ttttctctgcttcaaatgagtttcattgtttacattttagtaagaactggctatactgt-----gaagtaaaatctccaagtggctttgaattagtgagttttatttcaacaccagtagcttaataatggcatattctaatgttggggtgatcacacccaacaccaggtcgtgggggcaacaaagtccggcagagccaaaggaatgagaaaaa-acagtttgagagagaaagtg
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1971205 266 +   2316924 gcagtttgatttttcaaatcctaatttatcc-catcccc--ttttctctgcttcaaatgagtttcattgtttacattttagtaagaactggctatactgt-----gaagtaaaatctccaagtggctttgaattagtgagttttatttcaacaccagtagcttaataatggcatattctaatgttggggttatcacacccaacaccaggtcgtgggggcaacaaagtccggcagagccaaaggaatgagaaaaa-acagtttgagagagaaagtg
i manLeu1.NW_012104165v1   I 3752 C 0
s colAng1.NW_012115566v1     1851524 251 -   3067355 gcagtttggtttttaaaatcctcatttatcc-catctccttttttctctgcttcaaatgagtttcattgtttacattttagtaagaactggctatactgtagagaaaagtaaaatctccaagtggctttgaattagtgagttttatttcaacaccagtagcttaataaTGGcatatt----------------------caacaccaggtcatgggggcagcaaagtcaggcagagtcaaaggaatgagaaaaa-acagtttgagagagaaagtg
i colAng1.NW_012115566v1   C 0 I 45
e canFam3.chr35             25870850 854 +  26524999 I
e saiBol1.JH378348            203808 2744 -    375362 I
e otoGar3.GL873742           1518363   2 -   2232465 I
e aotNan1.NW_018494050v1      143062 1923 -    285216 I
e cebCap1.NW_016108108v1      204772 819 -    373274 I
e calJac3.chr4             171378046 2337 - 171630274 I
e chlSab2.chr17             28289465 5232 -  71996105 I
e cerAty1.NW_012001495v1     1839115 5493 -   2157725 I

a score=34777.000000
s hg38.chr6_GL000254v2_alt    140409 21 +   4827813 ggactaagtggccatcacgag----------------
s panTro5.chr6              29121542 21 + 175400573 ggactaagtggccatcacgag----------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29355872 21 + 173848474 ggactaagtggccatcacgag----------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5156079 21 +   6154872 ggactaagtggccatcacgag----------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74157353 21 + 122973662 ggactaagtagccatcacgag----------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29333412 36 + 172585720 agact-ggaggccatcgcaagggtggatgctgtggag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28994017 36 - 170955103 agact-ggaggccatggtaagggtggatgctgtggag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1970855 36 -   2996164 agact-ggaggccatcgcaagggtggatgctgtggag
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1971471 36 +   2316924 agact-gggggccatcgcaagggtggatgctgtggag
i manLeu1.NW_012104165v1   C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e saiBol1.JH378348            203808 2744 -    375362 I
e otoGar3.GL873742           1518363  2 -   2232465 I
e aotNan1.NW_018494050v1      143062 1923 -    285216 I
e cebCap1.NW_016108108v1      204772 819 -    373274 I
e calJac3.chr4             171378046 2337 - 171630274 I
e colAng1.NW_012115566v1     1851775 45 -   3067355 I
e chlSab2.chr17             28289465 5232 -  71996105 I
e cerAty1.NW_012001495v1     1839115 5493 -   2157725 I

a score=852207.000000
s hg38.chr6_GL000254v2_alt    140430 226 +   4827813 tgtggaggctgcgaaggccctgagctctgggagcccacgctatttattggtgctcaaac----aaacaggtagtgaagatgtgggggttgaaaggaaatggtgtatcaagtgaaagagaaacatatggctactttagataatgggagtgctaaaagcaaggagccagcaagtctagcagacatacaagtcctg-------ttgtctcccaacactcagcttctctcccaACATTCGA
s panTro5.chr6              29121563 226 + 175400573 tgtggaggctgcgaaggccctgagctctgggagcccacgctatttattggtgctcaaac----aaacaggtagtgaagatgtgggagttgaaaggaaacggtgtatcaagtgaaagagaaacatatggctactttagataatgggagtgctaaaagcaaggagccagcaagtctagcagacatacaagtcctg-------ttgtctcccaacactcagcttctctcccaACATTCGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29355893 226 + 173848474 tgtggaggctgcgaaggccctgagctctgggagcccacgctatttattggtgctcaaac----aaacaggtagtgaagatgtgggagttgaaaggaaacggtgtatcaagtgaaagagaaacatatggctactttagataatgggagtgctaaaagcaaggagccagcaagtctagcagacatacaagtcctg-------ttgtctcccaacactcagcttctctcccaACATTCGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5156100 226 +   6154872 tgtggaggctgcgaaggccctgagctctgggagcccacgctatttattggtgctcaaac----aaacaggtagtgaagatgtgggggttgaaaggaaacggtgtatcaagtgaaagagaaacatatggctactttagataatgggagtgctaaaagcaaggagccagcaagtctagcagacatacaagtcctg-------ttgtctcccaacactcagcttctctcccaACATTCGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74157374 230 + 122973662 tgtggaggctgccaaggccctgagctctgggagcccacactatttattggtgctcaaacaaagaaataggtagtgaggatgtgggggttgaaaggaaacggtgtatcaagtgaatgagaaacatatggctactttagataatgggagtgctagaagcaaggagcccgcaagtctagcagacatagaagtcctg-------ttgtctcccaacactcagcttctctcccaACATTCGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29333448 237 + 172585720 tgtggaggctccaaaggacctgagctatgggagcccactctatttattggtgctcaaacaaagaaacaggtggtgaggatgtgggggttgaaaggaaatggtgtatcatgtgaatgagaaacatatggctacttgagacaatgggagtgctagaagcaaggagccagcaagtctagcagacatgcaagccctgcctcagcttctcccccaacactcagcttttctcccaACATTTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28994053 237 - 170955103 tgtggaggctccaaaggacctgagctatgggagcccactctatttattggtgctcaaacaaagaaacaggtggtgaggatgtgggggttgaaaggaaatggtgtatcatgtgaatgagaaacatatggctacttgagacaatgggagtgctagaagcaaggagccagcaagtctagcagacatgcaagccctgcctcagcttctcccccaacactcagcttttctcccaACATTTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1970891 237 -   2996164 tgtggaggctccaaaggacctgagctatgggagcccactctatttattggtgctcaaacaaagaaacaggtggtgaggatgtgggggttgaaaggaaatggtgtatcatgtgaatgagaaacatatggctacttgagacaatgggagtgctagaagcaaggagccagcaagtctagcagacatgcaagccctgcctcagcttctcccccaacactcagcttttctcccaACATTTGA
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1971507 237 +   2316924 tgttgaggctccaaaggacctgggctatgggagcccactctatttattggtgctcaaacaaagaaacaggtggtgaggatgtgggggttgaaaagaaatggtgtatcatgtgaatgagaaacatatggctacttgagacaatgggagtgctagaagcaaggagccagcaagtctagcagacatgcaagccctgcctcagcttctcccccaacactcagcttttctcccaACATTTGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1851820 237 -   3067355 tatggaggctgtgaaagacctgacctatgggggcccactctatttattggcgctcaaacaaagaaacaggcggtgaggatctgggggttgaaaggaaatggtgtatcaagtaaatgagaaacatatggctacttgagacaatgggagtgctagaagcaaggagccagcaagtctagcagacatgcaagccctgcctcagcttctcccccaacactcagcttttctcccaACATTTGA
i colAng1.NW_012115566v1   I 45 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e saiBol1.JH378348            203808 2744 -    375362 I
e otoGar3.GL873742           1518363   2 -   2232465 I
e aotNan1.NW_018494050v1      143062 1923 -    285216 I
e cebCap1.NW_016108108v1      204772 819 -    373274 I
e calJac3.chr4             171378046 2337 - 171630274 I
e chlSab2.chr17             28289465 5232 -  71996105 I
e cerAty1.NW_012001495v1     1839115 5493 -   2157725 I

a score=1194879.000000
s hg38.chr6_GL000254v2_alt    140656 267 +   4827813 ggctgggcgcagtggctcacacctgtaatctcagcactttgggaggccgaggtgggtggatcacaaggtcaggagttcgagaccagcctggccaatatggtgaaa-ccccatctctactaaaaatac----------ctgggcgtggtggtgggttcctgtaatcccagctactcgggaggctgaggcaggaaaagagcttgaacccgggaggcggaggctgtagtgag--------------ctgcactccagcctgggtgac-agagtgagaatctgtctctaaataaata
s panTro5.chr6              29121789 267 + 175400573 ggctgggcgcagtggctcacacctgtaatctcagcactttgggaggccgaggtgggtggatcacaaggtcaggagttcgagaccagcctggccaatatggtgaaa-ccccatctctactaaaaatac----------ctgggagtggtggtgggttcctgtaatcccagctactcgggaggctgaggcaggaaaagagcttgaacccgggaggcggaggctgtagtgag--------------ctgcactccagcctgggtgac-agagtgagaatctgtctctaaataaata
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29356119 267 + 173848474 ggctgggcgcagtggctcacacctgtaatctcagcactttgggaggccgaggtgggtggatcacaaggtcaggagttcgagaccagcctggccaatatggtgaaa-ccccatctctactaaaaatac----------ctgggcgtggtggtggattcctgtaatcccagctactcgggaggctgaggcaggaaaagagcttgaacctgggaggcggaggctgtagtgag--------------ctgcactccagcctgggtgac-agagtgagaatctgtctctaaataaata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5156326 276 +   6154872 ggctgggcgcagtggctcacacctgtaatctcagcactttgggaggccgaggtgggtggatcacaaggtcaggagttcgagaccagcctggccaatatggtgaaa-ccccatctctactaaaaatac----------ctgggcgtggtggcaggttcctgtaatcccagctactcgagaggctgaggcaggaaaagagcttgaacccgggacgcggaggctgtagtgagctgagat-----cactgcactccagcctgggtgac-agagtgagaatctgtctctaaataaata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74157604 276 + 122973662 ggctgggcgcagtggctcacacctgtaatctcagcactttgggaggccgaggtgggcggattacaaggccaggagtttgagaccagcctggccaatatggtgaaa-ccccatctctactaaaaatac----------ctgggcatggtggcgggtgcctgtaatcccagctactcgggaggctaaggcaggagaatagcttgaacccgggagtcagaggctgtagtgagctgagat-----cactgcactccagcctgggtgac-agagtgagaatctgtctctaaataaata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29333685 285 + 172585720 ggcagggcgcagtgtctcatacctgtaatcgcggcactttgggaggccgaggtgggcggatcacaaggtcaggagtttgagaccagcctggccaatatggtgaaa-ccccatctctactaaaaatacaaaac-ttagctgggcatggtggcgagtgcctgtaatcccagctacttgggaggttgaggcaggagaatagcttgaactcaggaggcagaggctgcagtgagctgagat-----cactgcactccagcctgggtgaa-agagcaagaatctgtctctaaataaata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28994290 285 - 170955103 ggcagggcgcagtgtctcatacctgtaatcgcggcactttgggaggccgaggtgggcggatcacaaggtcaggagtttcagaccagcctggccaatatggtgaaa-ccccatctctactaaaaatacaaaac-ttagctgggcatggtggcgagtgcctgtaatcccagctacttgggaggttgaggcaggagaatagcttgaactcaggaggcagaggctgcagtgagctgagat-----cactgcactccagcctgggtgaa-agagcaagaatctgtctctaaataaata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1971128 286 -   2996164 ggcagggcgcagtgtctcatacctgtaatcgccgcactttgggaggccgaggtgggcggatcacaaggtcaggagtttgagaccagcctggccaatacggtgaaacccccatctctactaaaaatacaaaat-ttagctgggcatggtggcgagtgcctgtaatcccagctacttgggaggttgtgccaggagaatagcttgaactcaggaggcagaggctgcagtgagctgagat-----cactgcactccagcctaggtgaa-agagcaagaatctgtctctaaataaata
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1971744 285 +   2316924 ggcagggctcagtgtctcatacctgtaatcgcagcactttgggaggccgaggtgggcggatcacaaagtcgggagtttgagaccagcctggccaatatggtgaaa-ccccatctctactaaaaatacaaaac-ttagctgggcatggtggcgagtgcctgtaatcccagctacttgggaggttgaggcaggagaatagcttgaactcaggaggcagaggctgcagtgagctgagat-----cactgcactccagcctgggtgaa-agagcaagaatctgtctctaaataaata
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1852057 285 -   3067355 GTCAgggcgcagtgtctcatacctgtaatcccagcactttgggaggccgaggtgggcggatcacaaggtcaggagtttgagaccagcctggccaatatggtgaaa-ccccatctctactaaaaatacaaaac-ttagctgggcatggtggcgggtgcctgtaatcccagctacttgggaggctgaggcaggagaatagcttgaactgaggaggcagaggccgcagtaaactgagat-----cactgcactccagcctgggtgaa-agagcaataatctgtctctaaataaata
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            206552 292 -    375362 ggccgggcacggtggctcaagcctgtaatcccagcactttgggaggccgaggcgggtggatcacaaggtcgagagatcaagaccatcctggtcaacatggtgaaa-ccccgtctctactaaagatacaaaacattagctgggcatggtggcgcgtgcctgtaatcccagctactcaggaggctgaggcaggagaattgcctgaacccaggaggcggaggttgcggtgagccgagatcgcgccattgcactccagcctgggtaacaagagcgaaactccgtctcaaaaaaaaaa
i saiBol1.JH378348         I 2744 I 85
e canFam3.chr35             25870850 854 +  26524999 I
e otoGar3.GL873742           1518363   2 -   2232465 I
e aotNan1.NW_018494050v1      143062 1923 -    285216 I
e cebCap1.NW_016108108v1      204772 819 -    373274 I
e calJac3.chr4             171378046 2337 - 171630274 I
e chlSab2.chr17             28289465 5232 -  71996105 I
e cerAty1.NW_012001495v1     1839115 5493 -   2157725 I

a score=1562050.000000
s hg38.chr6_GL000254v2_alt    140923 313 +   4827813 aatagcatattcaaaataagcagaaac--aaaaat---aaagagagaaatagctttaggagactctacttaactctatagttgcagcttaaccatttaaaatccgc-atttttttt-gttgtaatttccccatcagttaaaaaatgtgcacaagaaagggccatacataataggtaaccagctggagtcctaaaaaagctggcatg-ctttgaacttctgcaggtgtttctatcctttctctgtttcctgctctaatgatttctcaggggccagccttattgcaacaatagcacatttgctatccttatcctactttgata
s panTro5.chr6              29122056 314 + 175400573 aatagcatattgaaaataggcagaaac--aaaaat---aaagagagaaatagctttaggagagtctatttaactctatagttgcagcttaaccatttaaaatccgc-atttttttttgttgtaattttcccatcagttaaaaaatgtgcacaagaaagggccatacataataggtaaccagctggagtcctaaaaaagctggcatg-ctttgaacttctgcaggtgtttctatcctttctctgtttcctgctctaatgatttctcaggcgccagccttattgcaacaatagcacatttgctatccttatcctactttgata
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29356386 313 + 173848474 aatagcatattgaaaataggcagaaac--aaaaat---aaagagagaaatagctttaggagagtctatttaactctatagttgcagcttaaccatttaaaatccgc-atttttttt-gttgtaattttcccatcagttaaaaaatgtgcacaagaaagggccatacataataggtaaccagctggagtcctaaaaaagctggcatg-ctttgaacttctgcaggtgtttctatcctttctctgtttcctgctctaatgatttctcaggggccagccttattgcaacaatagcacatttgctatccttatcctactttgata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5156602 311 +   6154872 aatagcatattcaaaataggcagaaac--aaaaat---aaagagagaaatagctttaggagactctacttaactctatagttgcagcttaaccatttaaaatccgc-attttttt--gttgtaattttcccatcagtcaaaaaatgtgcacaagaaagggccatacataataggtaaccagctggagtcctaaaaaagctggcatg-ctttgaacttctgcaggtgtttctatcctttctctgtttcctgctctaatgatttctcagg-gccagccttattgcaacaacagcacatttgctatccttatcctactttgata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74157880 307 + 122973662 aatagcatattcaaaataggtggaaac--aaaaat-------agagaaatagctttaggagactctacttaactctatagttgcagcttaacaatttaagatctga-attttttt--gttgtaattttcccatcagttaaaaaatgtgcacaagaaagggccatacataataggtaaccagctggaatcctaaaaaagctggcatg-ctttgaacttctgcaggtgtttctatcctttctccgtttccggctctaatgatttatcggg-gccagccttattgcaacaatagcacatttgctatccttatcctactttgata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29333970 314 + 172585720 aatagcatattcaaaataggcagaaac-aaaaaat---agagaaatagagagttttaggagactcttcttaactctatagttgcagcttaaccatttgagatctga-attttttt--gttgtaattttcccatcagtttaaaaaggtgcacaagaaaggaccacacataataggtaaccagctggagtcctaaaaaagctggcattcctttgaatttctgcaggcgtttctaccctttctcccgttcctgctctaatgctttctcaggggccagccttattgcaacaatagcacatttgctatccttatcctactttaata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28994575 314 - 170955103 aatagcatattcaaaataggcagaaac-aaaaaat---agagaaatagagagttttaggagactcttcttaactctatggttgcagcttaaccatttgagatctga-attttttt--gttgtaattttcccatcagtttaaaaaggtgcacaagaaaggaccacacataataggtaaccagctggagtcctaaaaaagctggcattcctttgaatttctgcaggcgtttctaccctttctcccgttcctgctctaatgctttctcagggtccagccttattgcaacaatagcacatttgctatccttatcctactttaata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1971414 314 -   2996164 aatagcatattcaaaataggcagaaac-aaaaaat---agagaaatagagagttttaggagactcttcttaactctatagttgcagcttaaccatttgagatctga-attttttt--gttgtaattttcccatgagtttaaaaaggtgcacaagaaaggaccacacataataggtaaccagctggagtcctaaaaaagctggcattcctttgaatttctgcaggcgtttctaccctttctcccgttcctgctctaatgctttctcagggtccagccttattgcaacaatagcacatttgctatccttatcctactttaata
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1972029 314 +   2316924 aatagcatattcaaaataggcagaaac-aaaaaat---agagaaatagagagttttaggagactcttcttaactctatagttgcagcttaaccatttgagatctga-attttttt--gttgtaattttcccatcagtttaaaaaggtgcacaagaaaggaccacacataataggtaaccagctggagtcctaaaaaagctggcattcctttgaatttctgcgggcgtttctaccctttctcccgttcctgctctaatgctttctcaggggccagccttattgcaacaatagcacatttgctatccttatcctactttaata
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1852342 311 -   3067355 aaTagcatattcaaaataagcagcaac-aaaaaat---agagaaat--agagttttaggtaactcttcttaactctatagttgcagcttaaccatttgagatctga-attttttt--gttgtaattttcccatcagtttaaaaatgtgcacaagaaaggaccacacataataggtaaccagctggagtcct-aaaaagctggcattcctttgaatttctgcaggcgtatctaccctttctccctttcctgctctaatgctttctcaggggccagccttattgcaacaatagcacatttgctatccttatcctactttaata
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            206929 313 -    375362 aatggcatattcaaaataagcagaaacgaaaaaataagagagaaatagacagctttaggagagtctatttaactctatagttgcagtttaaccattagagatctgaggttttttt--gttgtaatttgcccatcagtttaaaaatgtgcacaaggaaga-----ccataatcgataaccagctggagtcctagaaaagctggcacgcctttgaacttctgca-gcatttcttccttttctccctttcctgctctaatgatttctcaggggccagccttattgcaacaaaggcacatttgctatcctgatcctactttcatg
i saiBol1.JH378348         I 85 C 0
s cebCap1.NW_016108108v1      205591 312 -    373274 aatggcatattcaaaataagcagaaacaaaaaaataagagagaaacagagagctttaggagagtctacttaactctatagttgcagttcaaccatgagagatctga-attttttt--gttgtaatttgcccatcagtttaaaaatgtgcacaaggaaga-----ccatgatcgataaccagctggagtcctagaaaagctggcacgcctctgaacctctgca-gcgtttctcccttttctccctttcctgctctaatgatttttcaggggccagccttatcgcaacaaaggcacatttgctatcctgatcctactttcgtg
i cebCap1.NW_016108108v1   I 819 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e otoGar3.GL873742           1518363   2 -   2232465 I
e aotNan1.NW_018494050v1      143062 1923 -    285216 I
e calJac3.chr4             171378046 2337 - 171630274 I
e chlSab2.chr17             28289465 5232 -  71996105 I
e cerAty1.NW_012001495v1     1839115 5493 -   2157725 I

a score=1775908.000000
s hg38.chr6_GL000254v2_alt    141236 300 +   4827813 tcttagcctcttgcaatatgcgcttagtccccgccacattttctgagtatccctatacttcctcagcagtccacaaaggttgagcgatggagcaattccaccccacctgcatgttgccgaccaccccaggattccccctgcagatgccctttcctgactcattgtttggtctctcagatcctgtttgtgatgccaattgttatgagcaaaacttgggactgtaacgtccccctaaattgggaagcagccaacagaccaaagaatgacttggacacgtacagcttgacaagtaagatgaat
s panTro5.chr6              29122370 300 + 175400573 tcttagcctcttgcaatatgcgcttagtccccgccacattttctgagtatccctatacttccgcagcagtccacaaaggttgagcgatggagcaattccaccccacctgcatgttgccgaccaccccaggattccccctgcagatgccctttcctgactcattgtttggtctctcagatcctgtttgtgatgccaattgttatgagcaaaacttgggactgtaacgtccccctaaattgggaaggagccaacagaccaaagaatgacttggacaagtacagcttgacaagtaagatgaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29356699 300 + 173848474 tcttagcctcttgcaatatgcgcttagtccccgccacattttctgagtatccctatacttccgcagcagtccacaaaggttgagcgatggagcaattccaccccacctgcatgttgccgaccaccccaggattccccctgcagatgccctttcctgactcattgtttggtctctcagatcctgtttgtgatgccaattgttatgagcaaaacttgggactgtaacgtccccctaaattgggaaggagccaacagaccaaagaatgacttggacaagtacagcttgacaagtaagatgaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5156913 300 +   6154872 tcttagcctcttgcaatatgcgcttagtccccgccacattttctgagtatccctatacttccgcagcagtccacaaaggttgagcgatggagcaattccaccccacctgcatgttgccgaccaccccaggattacccctgcagatgccctttcctgactcattgtttggtctctcagatcctgtttgtgatgcctattgttatgagcaaaacttgggactgtaacgtccccctaaattgggaaggagccaacagaccaaagaatgacttggacaagtacagcttgacaagtaagatgaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74158187 293 + 122973662 -cttagcctcttgcaatatgtgctcagtccccgccacattttttgagtatccctatacttgcacagca-tccacaaaggttgagcagtggagaaattccaccccacctgcatgttgccgaccaccccaggattcctcctgtagatgccctttccttactcatcatttggtctctcggatcctgtttgtgatgccaattgttatgagcaaaacttgggactgtaacatccccc-aaattgggaaggagccaacagaccaaagaatgactcggacaagtacagcttgac----aagacgagt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29334284 298 + 172585720 tcttagcctcttgcaatatgcacttagtccctgccacattttctgagtatccctatacttgtgcagcagtccacaaaggttgagcggtggagcaattccaccccacctgcatgttgctgaccaccccaggattccccctgcagatgctgtttcctgactcatcctttggtctctcagctcctgtttgtgaggccaattgttatgag-aaaacttgggactataacgtccccctaaattgggaaggagccgagagaccaaagaatgactcagacgagtacagcttgacaagt-agatgagt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28994889 298 - 170955103 tcttagcctcttgcaatatgcacttagtccctgccacattttctgagtatccctatacttgtgcagaagtccacaaaggttgagcggtggagcaattccaccccacctgcatgttgctgaccaccccaggattccccctgcagatgctgtttcctgactcatcctttggtctctcagctcctgtttgtgaggccaattgttatgag-aaaacttgggactataacgtccccctaaattgggaaggagccgagagaccaaagaatgactcagacgagtacagcttgacaagt-agatgagt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1971728 298 -   2996164 tcttagcctcttgcaatatgcacttagtccctgccacattttctgagtatccctatacttgtgcagcagtccacaaaggttgagcggtggagcaattccaccccacctgcatgttgctgaccaccccaggattccccctgcagatgctgtttcctgactcatcctttggtctctcagctcctgtttgtgaggccaattgttatgag-aaaacttgggactataacgtccccctaaattgggaaggagccgagagaccaaagaatgactcagacgagtacagcttgacaagt-agatgagt
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1972343 298 +   2316924 tcttagcctcttgcaatatgcacttagtccctgccacattttctgagtatccctatacttgtgcagcagtccacaaaggttgagcggtggagcaattccaccccacctgcatgttgctgaccaccccaggattccccctgcagatgccgtttcctgactcatcctttggtctctcagctcctgtttgtgaggccaattgttatgag-aaaacttgggactataacgtccccctaaattgggaaggagccgagagaccaaagaatgactcagacgagtacagcttgacaagt-agatgagt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1852653 298 -   3067355 tcttagcctcttgcaatatgcacttagtccctgccacattttctgagtatccctatacttgcgcagcagtccacaaaggttgagcggtggagcaattccaacccacctgcatgttgctgaccaccccaggattccccctgcagatgccgtttcctgactcatcctttggtctctcagctcctgtttgtgaggccaattgttatgag-aaaacttgggactgtaacatccccctaaattgggaaggagccgagagaccaaagaatgactcagacaagtacagcttgacaagt-agatgagt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171380383 278 - 171630274 tcttagcttcttgcaatatgcgcttagtcctcaccacgtcttctgagcatgc---------------agtccgcaaaggttgaggggtccggcaattccctcccacccgcgtgttgcccgccg--ccgggattccccctgcagatgccctttcctgactcaccgtttgctccctcggactctgttcacgatgccaCCtgctacgagccaaacttgggactgtagcatccctctaaattggaaaggagccaagagaccaaagcgcaactc---gaagtctagcttgaca-gt-agatgagg
i calJac3.chr4             I 2337 C 0
s saiBol1.JH378348            207242 299 -    375362 tcttagtttcttgcaatatgtgcttagtcctcaccacgttttctgagtatgcttatagttgcacagtagtccacaaaggttgagcggtctggcaattccatcccacctgcgtgtagctgactgccccaggattcctcctgcagatgcccattcctgactcattgttcggtccctcggattctgtttgtgatgccagttgttatgagccaaacttggaactgtagcatccctctaaattgggaaggagccaagagaccaaagaacgactcagagaagtccagcttgacaggt-agatgagg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      205903 299 -    373274 tcttagcttcctgcaatatgtgcttagtcctcaccacgttttctgaacatgcttatagttgcgcagcagtccacaaaggttgactggtccggcaattccatcccacctgcgtgttgctgaccaccccaggattccccctgcagatgccctttcctgactcatcgtttggtccctcggattctgtttgtgatgccaattgttatgagccaaacttagaactgtagcatccctctaaattgggaaggaaccgagaaaccaaagaacgacttggagaagtccagcttgacaggt-agatgagg
i cebCap1.NW_016108108v1   C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e otoGar3.GL873742           1518363   2 -   2232465 I
e aotNan1.NW_018494050v1      143062 1923 -    285216 I
e chlSab2.chr17             28289465 5232 -  71996105 I
e cerAty1.NW_012001495v1     1839115 5493 -   2157725 I

a score=493623.000000
s hg38.chr6_GL000254v2_alt    141536  85 +   4827813 ttattaggacttacacacagggtactcctggat-gtagcaggacagctccagagatccatgcagcctcctgtctctaaatgg---------------c------ttt
s panTro5.chr6              29122670  85 + 175400573 ttattaggacttacacacagggtactcctggat-gtagcaggacagctccagagatccatgcagcctcctgtctctaaatgg---------------t------ttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29356999 100 + 173848474 ttattaggacttacacacagggtactcctggat-gtagcaggacagctccagagatccatgcagcctcctgtctctaaatggtttttttttgtttttt------ttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5157213  89 +   6154872 ttattaggacttacacacagggtactcctggat-gtagcaggacagctccagagatccatgcagcctcctgtctctaaatgg-----------ctttt------ttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74158480  87 + 122973662 ttattaggacttacacacagggtactcctggat-gtagcaggacagctgcagaggtccatgcagcctcctgtctctaaatgg-------------ctt------ttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29334582  82 + 172585720 ttattaggacttacacacagggcactcctggat-gtagcaggacagctctagagatccatgcagcctcctgtctctaaacga---------------c---------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28995187  82 - 170955103 ttattaggacttacacacagggcactcctggat-gtagcaggacagctctagagatccatgcagcctcctgtctctaaacga---------------c---------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1972026  82 -   2996164 ttattaggacttacacacagggcactcctggat-gtagcaggacagctctagagatccatgcagcctcctgtctctaaacga---------------c---------
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     1972641  85 +   2316924 ttattaggacttacacacagggcactcctggat-gtagcaggacagctctagagatccatgcagcctcctgtctctaaacga---------------cttt------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1852951  85 -   3067355 ttattaggacttacacacagggtactcctggat-gtagcaggacagctctagagattcatgcagcctcctgtctctaaacga---------------c---ttt---
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171380661  83 - 171630274 ttattaggacttgcacacagggtgctcctggatagcagcaggacagctctagagggtcatgctgcctcctgtctttaaactg---------------c---------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            207541  67 -    375362 tta-------------------tactcctggatagcagcaggatagctctagaggttcacactgcctcctgtctttaaacgg---------------c------tta
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      206202  67 -    373274 tta-------------------tactcctggatagcagcaggacagctctggaggttcacactgcctcctgtctttaaatgg---------------c------tta
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      144985  86 -    285216 ttattaggacttacacacagggtactcctgggtagcagcaggacagctctagaggttcatgctgcctcctgtctttaaacgg---------------c------ttA
i aotNan1.NW_018494050v1   I 1923 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e otoGar3.GL873742           1518363   2 -   2232465 I
e chlSab2.chr17             28289465 5232 -  71996105 I
e cerAty1.NW_012001495v1     1839115 5493 -   2157725 I

a score=1567391.000000
s hg38.chr6_GL000254v2_alt    141621 205 +   4827813 ttttttttttttttttttttaccaagtctcgctctgtctcctaggct-cgagtatagtgctgccatctcggctcactgcagcctccgcctcctgggttcaagtgattctcctgcctcagcctcccgggtagctgggattacaggcacccgccaccccatcctgctaa-tatttgtatttttagaagagactgggtttcactatgttg
s panTro5.chr6              29122755 205 + 175400573 ttttttttttttttttttttaccaagtctcgctctgtctcctaggct-cgagtatagtgctgccatctcggctcactgcagcctccgccttctgggttcaagtgattctcctgcctcagcctcccgggtagctgggattacaggcacccgccgccccatcctgctaa-tatttgtatttttagaagagactgggtttcactatgttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29357099 205 + 173848474 ttttttttttttttttttttACCAagtctcgctctgtctcctaggct-cgagtatagtgctgccatctcggctcactgcagcctccgcctcctgggttcaagtgattctcctgcctcagcctcccgggtagctgggattacaggcacccgccgccccatcctgctaa-tatttgtatttttagaagagactgggtttcactatgttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5157302 205 +   6154872 tttttttttttttttttttAACCAagtctcgctctgtctcctaggct-cgagtatagtgctgccatctcgactcactgcagcctccgcctcctgggttcaagtgattctcctccctcagcctcccgagtagctgggattacaggcacccgccaccccatcctgctaa-tatttgtatttttagaagagactgggtttcactatgttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74158567 205 + 122973662 ttttttttttttttttttttACCAagtctcgctccgtctcccaggct-cgagtatagtgctgccatctcggctcactgcagcctccacctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcacccgccaccccgtcctgctaa-tatttgtatttttagtagagactgggtttcactatgttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29334664 203 + 172585720 ---tttttttttttttttaaaccaagtctcactctgtctcccaggctcccagtatagtgctgtcatctcggctcactgcagcctccgcttccttggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcacccaccaccccgccctggtaa-tatttgtatttttagtagagactgggtttcactatgttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28995269 203 - 170955103 ---tttttttttttttttaaaccaagtctcactctgtctcccaggctcccagtatagtgctgtcatctcggctcactgcagcctccacttccttggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcacccaccaccccgccctggtaa-tatttgtatttttagtagagactgggtttcactatgttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1972108 203 -   2996164 ---tttttttttttttttaaaccaagtctcactctgtctcccaggctcccagtatagtgctgtcatctcggctcactgcagcctccgcttccttggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcacccaccaccccgccctggtaa-tatttgtatttttagtagagactgggtttcactatgttg
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28294697 206 -  71996105 ttttttttttttttttttaaatgaagtctcactccttctcccaggctcccagtatagtgctgtcatctcggctcactgcagcctccgcctcctgggttcaagtgattcttctgcctcagcctcctgagtagctgggattactggcacccaccaccctgccctggtaa-tatttgtatttttagtagagactgggtttcactatgttg
i chlSab2.chr17            I 5232 C 0
s manLeu1.NW_012104165v1     1972726 201 +   2316924 -----tttttttttttttaaaccaagtctcactctgtctcccaggctcccagtatagtgctgtcatctcggctcactgcagcctccgcttccttggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcacccaccaccccgccctggtaa-tatttgtatttttagtagagactgggtttcactatgttg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1853036 198 -   3067355 --------tgtttttttaaaaccaagtctcactctgtctcccaggctccgagtatagtgctgtcatctcggctcactgcagcctccgcctcctgggttcaagtgattctcctgcctcagcctcctgagtaactgggattactggcacccaccaccctgccctggtaa-tatttgtatttttagtagagacttggtttcactatgttg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171380744 203 - 171630274 -ttatttatttatttttttgaccaagtctcactctgtctccgaggct-ggagtatagtgctgccatcttggctcactgcaacctccacctcct-agttcaggtgattctcgtgcctcagccccccaaatacctgggattacaggcacgtgccaccccgtcctgctaa-tttttgtatttttagtagagatgggatttcgccatgttg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            207608 197 -    375362 tttatttatttatttatttgaccaagtcttactctgtctcccaggct-ggagtatagtgctgccatcttggctcactgcaacctccgcccccc-agtccaagtgatt-------ctcagcccccgaagtacctgggattacaggcgcgtgccaccccatcctgctaa-tttttgtatttttagtagagatgggatttcaccatgttg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      206269 191 -    373274 tttatttatttatttatttgacaaagtctcactctgtctcccaggct-ggagtatagtgctgccatcttggctcactgcaatctccacctccc-agttcaagtgatt-------ctcagctcccaaagtacctgggattataggcacatgccaccccgtcctgctaa-tttttgtatttttagtagagatggggtt------tgttg
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      145071 205 -    285216 TTTATTTATTTATTTATTTGGCCAagtctcactctgtgtcccaggtt-ggagtatagtgctgccatcttggctcactgcaacctctgcctccc-agttcaagtgattctcgtgcctcagccccccaagtacgtgggattacaggcacgtgccaccccgtcctgctaattttttgtatttttagtagagatgggatttcaccatgttg
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e otoGar3.GL873742           1518363   2 -   2232465 I
e cerAty1.NW_012001495v1     1839115 5493 -   2157725 I

a score=3065542.000000
s hg38.chr6_GL000254v2_alt    141826 316 +   4827813 gccaggctggtctcgaactcctgggctcaagcaatccacccacctcggcctccca---------gagtg-tgggattacaggcatgtgccaccgcacccagcctctaaactgcttttaag-------cttattttctggctatttgtctactgtgtttgagtgatgagactgtttttcttagtaggttcctagatactctcccggatgtttgggttcttagggacacctactctttggctgggcaccatggccttggctcaccacctggctttcaggattcaggcagtggacatacatccttacctaatctggtgggggattcatcacactac
s panTro5.chr6              29122960 316 + 175400573 gccaggctggtctcgaactcctgggctcaagcaatccacccacctcggcctccca---------gagtg-tgggattacaggcatgtgccaccgcacccagcctctaaactgcttttaag-------cttattttctggctatttgtctactgtgtttgagtgatgagactgtttttcttagtaggttcctagatactctcccggatgtttgggttattagggacacctactctttggctgggcaccatggccttggctcaccacctggctttcaggattcaggcagtggacatacatccttacctaatctggtgggggattcatcacactac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29357304 316 + 173848474 gccaggctggtctcgaactcctgggctcaagcaatccacccacctcggcctccca---------gagtg-tgggattacaggcatgtgccaccgcacccagcctctaaactgcttttaag-------cttattttctgcctatttgtctactgtgtttgagtgatgagactgtttttcttagtaggttcctagatactctcccggatgtttgggttattagggacacctactctttggctgggcaccatggccttggctcaccacctggctttcaggattcaggcagtggacatacatccttacctaatctggtgggggattcatcacactac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5157507 315 +   6154872 gccaggctggtctcgaactcctgggctcaagcaatccacccacctcggcctccca---------gagtg-tgggattacaggcatgtgccaccgcacccagcctctaaactgcttttaag-------cttattttctggctatttgtctactgtgtttgagtgatgagactgtttttcttagtaggttcctagatactctcccggatgttt-ggttcttagggacacctactctttggctgggcaccatggccttggctcaccacctggctttcaggattcaggcagtggacatacatccttacgtaatctggtgggggattcatcacactac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74158772 314 + 122973662 gccaggctggtctcgaactcctggactcaagcaatccacccacctcggcctccca---------gagtgctgggattacaggcatgtgccaccgcacccagcctctaaactgcttttaag-------cttattttctggctatttgtctac-gtgtttgagtgatgagac--tttttcttagtgggttcctagatactctcctggatgtttgggttctcagggacacctactctttggctgggcaccgtggccttggctcaccacctggctttcaggattcaggcagtggacatacatccttatgtaatctggtgggggattcatcacactac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29334867 317 + 172585720 gccaggctggtctcaaactcctggcctcaagcaatccacccacctcagcctccca---------gagtgctgggattacaggtgcgtgacaccacacccagcctctaaactgctttcaaa-------cttattttcaggctatttgtctactgtgtttgagtgatgagactgtttttcttagtaggttcctagatactctcctggatgtttgggttctcagggacacctactccttggctgcgcaccatggccttggctcaccacctggctctcaggattcaggcagtggacatacatccttacataatctggtggtggactcatcacactac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28995472 317 - 170955103 gccaggctggtctcaaactcctggcctcaagcaatccacccacctcggcctccca---------gagtgctgggattacaggcgcgtgacaccacacccagcctctaaactgctttcaaa-------cttattttcaggctatttgtctactgtgtttgagtgatgagactgtttttcttagtaggttcctagatactctcctggatgtttgggttctcagggacacctactccttggctgcgcaccatggccttggctcaccacctggctctcaggattcaggcagtggacatacatccttacataatctggtgggggactcatcacactac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1972311 316 -   2996164 gccaggctggtctcaaactcctggcctcaagcaatccacccacctcggcctccca---------gagtgctgggattacaggcgcgtgacaccacacccagcctctaaactgctttcaaa-------cttattttcaggctatttgtctactgtgtttgagtgatgagactgtttttcttagta-gttcctagatactctcctggatgtttgggttctcagggacacctactccttggctgcgcaccatggccttggctcaccacctggctctcaggattcaggcagtggacatacatccttacataatttggtgggggactcatcacactac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1844608 317 -   2157725 Gccaggctggtctcaaactcctggcctcaagcaatccacccacctcggcctccca---------gagtgctgggattacaggcgcgtgacaccgcacccagcctctaaactgctttcaaa-------cttattttcaggctatttgtctactgtgtttgagtgatgagactgtttttcttagtaggttcctagatactctcctggatgtttgggttctcagggacacctactccttggctgcgcaccatggccttggctcaccacctggctctcaggattcaggcagtggacatacgtccttacataatctggtgggggactcatcacactac
i cerAty1.NW_012001495v1   I 5493 C 0
s chlSab2.chr17             28294903 317 -  71996105 gccaggctggtctcgaactcctgggctcaagcaatccacccacctcggcctccca---------gagtgctgggattacaggcgcatgacaccgcacccagcctctaaactgctttcaaa-------cttattttcaggctatttgtctactgtgtttgagtgatgagactgtttttcttagtaggttcctagatactctcctggatgtttgggttctcagggacacctactccttggctgggcaccatggccttggctcaccacctggctctcaggattcaggcagtggacatacgtccttacataatctggtgggggactcatcacactac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1972927 317 +   2316924 gccaggctggtctcaaactcctggcctcaagcaatccacccacctcggcctccca---------gagtgctgggattacaggcgcgtgacaccgcacccagcctctaaactgctttcaaa-------cttattttcaggctatttgtctactgtgtttgagtgatgagattgtttttcttagtaggttcctagatactctcctggatgtttgggttctcagggacacctactccttggctgcgcaccatggccttggctcaccacctggctctcaggattcaggcagtggacatatatccttacataatctggtgggggactcatcacactac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1853234 326 -   3067355 gccaggctggtctcgaactcctgggctcaagcaatccacccacctcggcctcccagagtgctgggagtgctgggattataggcgtgtgccaccgcacccagcctctaaactgctttcaaa-------cttattttcaggctatttgtctactgtgtttgagtgatgagactgtttttcttagtaggttcctagatacactgctggatgtttgggttctcagggacacctactccttggctgggcaccatggccttggctcaccacctggctctcaggattcaggcagtggacatacatccttatataatctggtgggggactcttcacactac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171380947 322 - 171630274 gccaggctgg--tcaaactcctgggctcaagtgatccacccaccttggcctctca---------gagtgctgggattacaagcgtgtgtcaccgcacccaggctctaaactgctgttaagtgttaaatttattttctggctgtttatctacagtgtttgagtgatgagactgtttttcttagtagatttgcagatactctcccagatgtttgggttctcaggtacacgtgctccttatctgggcaccatggccgtggctcaccacctggctttcaggattcaggcagtggctatacatccttaagtaatctggtgggagacccatcacacttc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            207805 322 -    375362 gccaggctgg--tcgaactcctgggctcaaacgatccatccaccttggcctctca---------gagtgctgggattacaagcatctgtcaccacacccaggctctaaactgctattaagtgttaagtttgtttcctggctgtttgtctacagtgtttgagtgatgagactgtttttcttggtaggtttgtagacactctcccagatgtttgggttctcagggacatgtgctccttatctgggcaccatggccttggctcaccacctggctttcaggattcaggtagtggatatacatccttaaataatctggtgggagatccatcacactac
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      206460 315 -    373274 gccaggctgg--tcgaactcctgggctcaagcgatccacccaccttggcctctca---------gagtgctgggattacaagcgcatgttgccacacccaggctctgaactgctattaag-------tttattttctggctgtttgtctacagtgtttgagtgatgacactgtttttcttggtaggtttgtagatactctcccagatgtttgggttctcagggacacgtgctccttatctgggcaccatggccttggctcaccacctagctttcaggattcaagcagtgggtatacatccttaagtaacctggtgggagatccatcacactac
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      145276 313 -    285216 gccaggctgg--tcgaactcctgggctcaagcgatccacccaccttggcctctca---------gagtgctgggattacaagcgtgtgtcaccgcacccagGctctaaactgc---taagtgttaagtttattttctggctgtttgtctacagtgtttgagtga------tgtttttcttggtatgtttgcagatactctcccagatgtttgggttctcagggacacgtgctccttatctgggcaccatgcctttggctcaccacctggctttcaggattcaggcagtggatatacttccttaagtaatctggtgggagatccatcacactac
i aotNan1.NW_018494050v1   C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e otoGar3.GL873742           1518363   2 -   2232465 I

a score=771245.000000
s hg38.chr6_GL000254v2_alt    142142 77 +   4827813 GGAAGGGAAAAGAGGAAACCCAT------------------GAGGTGAGAGGCAGCGTGCTGGGTAGTGGAGCCTCAAGGATGCTCAGGATTTGG
s panTro5.chr6              29123276 77 + 175400573 GGAAGGGAAAAGAGGAAACCCAT------------------GAGGTGAGAGGCAGTGTGCTGGGTAGTGGAGCCTCAAGGATGCTCAGGATTTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29357620 77 + 173848474 GGAAGGGAAAAGAGGAAACCCAT------------------GAGGTGAGAGGCAGTGTGCTGGGTAGTGGAGCCTCAAGGATGCTCAGGATTTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5157822 77 +   6154872 GGAAGGGAAAAGAGGAAACCCAT------------------GAGGTGAGAGGCAGTGTGCTGGGTAGTGGAGCCTCAAGGATGCTCAGGATTTAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74159086 77 + 122973662 aGAAGGGAAAAGAGCAAACCAAT------------------GAGGTGAGAGGCAGTGTGCTGGGTGGTGGAGCCTCAAGGATGCTCAGGATTTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29335184 95 + 172585720 aGAAAAGAAAAGAGGAAACCCATGAGCAGCAGACAGAAGAAGAGGTGAGAGGCAGTGTGCTGGGGAGTGGAGACTCAAGGATGCTCAGGATTTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28995789 95 - 170955103 aGAAAAGAAAAGAGGAAACCCATGAGCAGCAGACAGAAGAAGAGGTGAGAGGCAGTGTGCTGGGGAGTGGAGACTCAAGGATGCTCAGGATTTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1972627 95 -   2996164 aGAAAAGAAAAGAGGAAACCCATGAGCAGCAGACAGAAGAAGAGGTGAGAGGCAGTGTGCTGGGTAGTGGAGACTCAAGGATGCTCAGGATTTGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1844925 95 -   2157725 aGAAAAGAAAAGAGGAAACCCATGAGCAGCAGACAGAAGAAGAGGTGAGAGGCAGTGTGCTGGGGAGTGGAGACTCAAGGATGCTCAGGATTTGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28295220 95 -  71996105 aGAAAGGAAAAGAGGAAACCCATGAGCAGCAGACGGAAGAAGAGGTGAGAGGCAGTGTGCTGGGGAGTGGAGACTCAAGGATGCTCAGGATTTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1973244 95 +   2316924 aGAAAAGAAAAGAGGAAACCCATGAGCAGCAGACAGAAGAAGAGGTGAGAGGCAGTGTGCTGGGGAGTGGAGACTCAAGGATGCTCAGGATTTGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1853560 94 -   3067355 aGAAAGGAAAAGAGGAAACCCATGAGCAGCAGACAGAAGAAGAGGTGAGAGGCAGTGTGCTGGG-AGTAGAGACTCAAGGATGCTCAGGATTTGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171381269 79 - 171630274 aGA---AAGAAGAGGAAACCAGTGAGCAGCAGACAGAA---GAAGTGAGAGGCAGTGTGCTGGGGAGT----------GGATGCTTAGAATTTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            208127 91 -    375362 aGAA-GAAAAAGAGGAAACCAGTGAGCAGCAGACAGAA---GAAGTGAGAGGCAGTATGCTGGGGAGTGGAGCCTCAAGGATGTTTAGGATTTGG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      206775 91 -    373274 aGAA-GAAAAAGAGGCAACCAGTGAGCAGCAGACAGAA---GAAGTGAGAGGAAGTGTGCTGGGGAGTGGAGCCTCAAGGATGCTTAGGATTTGT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      145589 91 -    285216 aGAA-GAAAAAGAGGAAACTAGTGAGCAGCAGACAGAA---GAAGTGAGAGGCAGTGTGCTGGGGAGTGGAGCCTCAAGGATGCTTAGGATTTGG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1518365 92 -   2232465 GGAAGGGAAGAGAGGGGATCTGACAATGGGAGACAGAA---GAGGTGGAAGGAAATGAACTGGAAGATGAGCCTTTAAAGATGCTTGGGAGGAGA
i otoGar3.GL873742         I 2 C 0
e canFam3.chr35             25870850 854 +  26524999 I

a score=659642.000000
s hg38.chr6_GL000254v2_alt    142219 55 +   4827813 ATGCTCAGATCTGGATGTGTCCCAGGTCCCCAATGCATCTGTGCTTCCTCCAGGT
s panTro5.chr6              29123353 55 + 175400573 ATGCTCAGATCTGGATGTGTCCCAGGTCCCCAATGCATCTGTGCTTCCTCCAGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29357697 55 + 173848474 ATGCTCAGATCTGGATGTGTCCCAGGTCCCCAATGCATCTGTGCTTCCTCCAGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5157899 55 +   6154872 ATGCTCAGATCTGGATGTGTCCCAGGTCCCCAATGCATCTGTGCTTCCTCCAGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74159163 55 + 122973662 ATGCTCAGATCTGGATGTGTCCCAGGTCCCCAATGCATCTGTGCTTCCTCCAGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29335279 55 + 172585720 ATGCTCAGATCTGAATGTGTCCCAGGCCCCCAGTGCATCTGTGCTTCCTCCAGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28995884 55 - 170955103 ATGCTCAGATCTGAATGTGTCCCAGGCCCCCAGTGCATCTGTGCTTCCTCCAGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1972722 55 -   2996164 ATGCTCAGATCTGAATGTGTCCCAGGCCCCCAGTGCATCTGTGCTTCCTCCAGGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1845020 55 -   2157725 ATGCTCAGATCTGAATGTGTCCCAGGCCCCCAGTGCATCTGTGCTTCCTCCAGGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28295315 55 -  71996105 ATGCTCAGATCTGGATGTGTCCCAGGCCCCCAGTGCATCTGTGCTTCCTCCAGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1973339 55 +   2316924 ATGCTCAGATCTGAATGTGTCCCAGGCCCCCAGTGCATCTGTGCGTCCTCCAGGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1853654 55 -   3067355 GTGCTCAGATCTGGATGTGTCCCAGGCCCCCAGTGCATCTGTGCTTCCTCCAGGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171381348 55 - 171630274 ATGGTCAGATATGGATGTGTCCCAGATCCCTGCTGCATCTGTGCTTCCTCCAGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            208218 55 -    375362 ATGCTCAGATATGGATGTGTCCCAGATCCCTGCTGCATCTGTGCTTCCTCCAGGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      206866 55 -    373274 ATGCTCAGATATGGATGTGTCCCAGATCCCGGCTGCATCTGTGCTCCCTCCAGGT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      145680 55 -    285216 ATGCTCTGATATGGGTGCATCCCAGATCCCTGCTGCATCTGTGCCTCCTCCAGGT
i aotNan1.NW_018494050v1   C 0 I 357
s proCoq1.NW_012147953v1      935117 55 -   3516910 ATGCTCAGATCTGGACATGTTTAAGATCCCCAACACTCCTATGCTTCCCCCAGGT
i proCoq1.NW_012147953v1   N 0 C 0
s otoGar3.GL873742           1518457 55 -   2232465 ATGCTCAAGTCTGGACCTGTTTCAGATCCCCAGTGCTCCTATTCTTCCTCCAGGT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I

a score=34752.000000
s hg38.chr6_GL000254v2_alt    142274 3 +   4827813 ACT
s panTro5.chr6              29123408 3 + 175400573 ACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29357752 3 + 173848474 ACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5157954 3 +   6154872 ACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74159218 3 + 122973662 ACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29335334 3 + 172585720 ACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28995939 3 - 170955103 ACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1972777 3 -   2996164 ACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1845075 3 -   2157725 ACT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28295370 3 -  71996105 ACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1973394 3 +   2316924 ACT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1853709 3 -   3067355 AGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171381403 3 - 171630274 ACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            208273 3 -    375362 ACT
i saiBol1.JH378348         C 0 I 323
s cebCap1.NW_016108108v1      206921 3 -    373274 ACT
i cebCap1.NW_016108108v1   C 0 C 0
s proCoq1.NW_012147953v1      935172 3 -   3516910 ACT
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1518512 3 -   2232465 ACT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e aotNan1.NW_018494050v1      145735 357 -    285216 I

a score=53448.000000
s hg38.chr6_GL000254v2_alt    142277 6 +   4827813 AGAGAA
s panTro5.chr6              29123411 6 + 175400573 AGAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29357755 6 + 173848474 AGAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5157957 6 +   6154872 ACAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74159221 6 + 122973662 ACAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29335337 6 + 172585720 ACAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28995942 6 - 170955103 ACAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1972780 6 -   2996164 ACAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1845078 6 -   2157725 GCAGAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28295373 6 -  71996105 AGAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1973397 6 +   2316924 ACAGAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1853712 6 -   3067355 ACAGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171381406 6 - 171630274 ACAGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            208599 6 -    375362 agaaaA
i saiBol1.JH378348         I 323 C 0
s cebCap1.NW_016108108v1      206924 6 -    373274 ACAGAA
i cebCap1.NW_016108108v1   C 0 I 345
s proCoq1.NW_012147953v1      935175 6 -   3516910 AGAGAA
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1518515 6 -   2232465 AGACAA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e aotNan1.NW_018494050v1      145735 357 -    285216 I

a score=32225.000000
s hg38.chr6_GL000254v2_alt    142283 5 +   4827813 GAATG-
s panTro5.chr6              29123417 5 + 175400573 GAATG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29357761 5 + 173848474 GAATG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5157963 5 +   6154872 GAATG-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74159227 5 + 122973662 GAATG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29335343 5 + 172585720 GAATG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28995948 5 - 170955103 GAATG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1972786 5 -   2996164 GAATG-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1845084 5 -   2157725 GAATG-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28295379 5 -  71996105 GAATG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1973403 5 +   2316924 GAATG-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1853718 5 -   3067355 GAATG-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171381412 5 - 171630274 GAACG-
i calJac3.chr4             C 0 I 603
s saiBol1.JH378348            208605 5 -    375362 GAACA-
i saiBol1.JH378348         C 0 C 0
s proCoq1.NW_012147953v1      935181 5 -   3516910 -GACAG
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1518521 4 -   2232465 -GACA-
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e aotNan1.NW_018494050v1      145735 357 -    285216 I
e cebCap1.NW_016108108v1      206930 345 -    373274 I

a score=137347.000000
s hg38.chr6_GL000254v2_alt    142288 16 +   4827813 AATGCCCCTTACTCTA
s panTro5.chr6              29123422 16 + 175400573 AATGCCCCTTACTCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29357766 16 + 173848474 AATGCCCCTTACTCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5157968 16 +   6154872 AATGCCCCTTACTCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74159232 16 + 122973662 AATGCCCCTTACTCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29335348 16 + 172585720 AATGCCCCTTATTCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28995953 15 - 170955103 AATG-CCTTTATTCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1972791 16 -   2996164 AATGCCCCTTACTCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1845089 16 -   2157725 AATGCCCCTTATTCTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28295384 16 -  71996105 AATGCCCCTTATTCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1973408 16 +   2316924 AATGCCCCTTATTCTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1853723 16 -   3067355 AATGCCCCTTATTCTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171382020 16 - 171630274 aaGGCCCCTTCCTCTA
i calJac3.chr4             I 603 I 3
s saiBol1.JH378348            208610 16 -    375362 AAGGCCCCTTCCTCTA
i saiBol1.JH378348         C 0 I 3
s proCoq1.NW_012147953v1      935186 16 -   3516910 GAGGCCCTTTGCTCTA
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1518525 16 -   2232465 GAGACCCTTTGCTCTA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e aotNan1.NW_018494050v1      145735 357 -    285216 I
e cebCap1.NW_016108108v1      206930 345 -    373274 I

a score=2566506.000000
s hg38.chr6_GL000254v2_alt    142304 213 +   4827813 AAGTGAGGCAACAGAAGGTGTCAATCCTTCGAGTTcagttgttcacaaagcataggtccatcagaatcatctggatgacttgttgaaacata---ttggaacat-cctttgggaatttctgatttagtggacctggggtagggcccaagaatttgcagttctaacaggtttccagattatactgatggtgatccatggaccaaattccagaacctct
s panTro5.chr6              29123438 213 + 175400573 AAGTGAGGCAACAGAAGGTGTCAGTCCTTCGAGTTcagttgttcacaaagcataggtccatcagaatcatctggatgacttgttgaaacata---ttggaacat-cctttgggaatttctgatttagtggacctggggtagggcccaagaatttgcagttctaacaggtttccagattatactgatggtgatccatggaccaaattccagaacTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29357782 213 + 173848474 AAGTGAGGCAACAGAAGGTGTCAATCCTTCGAGTTcagttgttcacaaagcataggtccatcagaatcatctggatgacttgttgaaacata---ttggaacat-cctttgggaatttctgatttagtggacctggggtagggcccaagaatttgcagttctaacaggtttccagattatactgatggtgatccatggaccaaattccagaacctct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5157984 213 +   6154872 AAGTGAGGCAACAGAAGGTGTCAATCCTTCGAGTTcagttgttcacaaagcataggtccatcagaatcatctggatgacttgttgaaacata---ttggaacat-cctttcggaatttctgatttagtggacctggggtagggcccaagaatttgcagttctaacaggtttccagattatactgatggtgatccatggaccaaattccagaacctct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74159248 216 + 122973662 AAGTGAGGCAACAGAAGGTGTCAATCCTTCGAGTTcagttgttcacaaagcataggtgcatcagaatcatctggatgacttgttgaaacatatattgggaacat-ccattgggaatttctgatttagtgggcctggggtagaacccaagaatttgcagttctaacaggtttccagattatactgatggtgatccatggaccaaattccagaacctct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29335364 215 + 172585720 AAGTGAGGCAACAGAAGGTGTCAATCCTTCGAGTTcagttgttcacaaagcgtaggtgcatcagaatcatctggatggcttgttgaaacatatattgggaacat-ccatt-ggaatttctgatttagtgggcctggggtagggcccaagaatttgcagttctaacaggtttccagattatactgatggtgatccgtggaccaaattccagaacctct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28995968 215 - 170955103 AAGTGAGGCAACAGAAGGTGTCAATCCTTCGAGTTcagttgttcacaaagcgtaggtgcatcagaatcatctggatggcttgttgaaacatatattgggaacat-ccatt-ggaatttctgatttagtgggcctggggtagggcccaagaatttgcagttctaacaggtttccagattatactgatggtgatccgtggaccaaattccagaacctct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1972807 215 -   2996164 AAGTGAGGCAACAGAAGGTGTCAATCCTTCGAGTTcagttgttcacaaagcgtaggtgcatcagaatcatctggatggcttgttgaaacatatattgggaacat-ccatt-ggaatttctgatttagtgggcctggggtagggcccaagaatttgcagttctaacaggtttccagattatactgatggtgatccgtggaccaaattccagaacctct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1845105 215 -   2157725 AAGTGAGGCAACAGAAGGTGTCAATCCTTCGAGTTcagttgttcacaaagcgtaggtgcatcagaatcatctggatggcttgttgaaacatatattgggaacat-ccatt-ggaatttctgatttagtgggcctggggtagggcccaagaatttgcagttctaacaggtttccagattatactgatggtgatccgtggaccaaattccagaacctct
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28295400 215 -  71996105 AAGTGAGGCAACAGAAGGTGTCAATCCTTCGAGTTcagttgttcacaaagcataggtgcatcagaatcatctggatggcttgttgaaacgtatattgggaacat-ccatt-ggaatttctgatttagtgggcttggggtagggcccaagaatttgcagttctaacaggtttccagattatactgatggtgatccgtggaccaaattccagaacctct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1973424 215 +   2316924 AAGTGAGGCAACAGAAGGTGTCAATCCTTCGAGTTcagttgttcacaaagcgtaggtgcatcagaatcatctggatggcttgttgaaacatatattgggaacat-ccatt-ggattttctgatttagtgggcctggggtagggcccaagaatttgcagttctaacaggtttccagattatactgatggtgatccatggaccaaattccagaacctct
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1853739 215 -   3067355 AAGTGAGGCAACAGAAGGTGTCAATCCTTCGAGTTcagttgttcacaaagcgtaggtgcatcagaatcatctggatggcttgttgaaacatatattgggaacat-ccatt-ggaatttctgatttagtgggcctggggtagggcccaagaatttgcagttctaacaggtttccagattatactgatggtgatcagtggaccaaattccagaacctct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171382039 216 - 171630274 AAGTGAGGAGACAGAAGGTGCCAATCATTCAAGTTcagttgctcacaaagcttaggtaactcagaaccatttggatggcctgttgaaacatattttgggaacat-ccattgggaatttccgatttagtgggcctggggtagggcccatgaatttgcagttctaacaggtttccagattatactgacggtgatccatggaccaaatttcagaacctct
i calJac3.chr4             I 3 C 0
s saiBol1.JH378348            208629 216 -    375362 ACGTGAGGAGACAGAAGGTGCCAATCCTTCGAGTTcagttgttcacaaagcttaggtccatcagaatcatctggatggcctgttgaaacatattttgggaacat-ccattgggaatttccgatttagtgggcctggggtggggcccatgaatttgcagttctaacaggtttccagattatactgacggtgatccgtagaccaaattccagaacctct
i saiBol1.JH378348         I 3 C 0
s cebCap1.NW_016108108v1      207275 216 -    373274 AAGTGAGGAGACAGAAGGCACCAATCCTTCGAGTTcagttgttcacaaagcttaggtgcatcagaatcatctggatggcctgttgaaacatattttgggaacat-ccattgggaatttctgatttagtgggcctggggtagggtccatgaatctgcagttctaacaggtttctagattatactgatggtgatctgtggaccaaattccagaacctct
i cebCap1.NW_016108108v1   I 345 C 0
s aotNan1.NW_018494050v1      146092 216 -    285216 AAGTGAGGAGACAGAAGGTGCCAGTCCTTCGAGTTcagttgttcacaaagcttaggtgcatcagaatcatctggatggcctgttgaaacatattttgggaacat-ccattgggaatttccgattcagtgggactgaggtagggcccatgaatttgcagttctaacaggtttccagatcatactgatggtgatccatgggccaaattccagaacctct
i aotNan1.NW_018494050v1   I 357 C 0
s proCoq1.NW_012147953v1      935202 217 -   3516910 AGATGAGGGAGCAGAAGATGTCCATCCTTCTAGTTcagtcatttacaaagtttaggtgcatcagaatcacctgaagggcctgttgcaacatatattggaaacatcctcctccaaatttctaatttagtagttctgaggtggggcctgagaattttcagttctaacaggtttccaaattatgctgacggagatcctaggaccaaatttcagaacctct
i proCoq1.NW_012147953v1   C 0 I 75
s otoGar3.GL873742           1518541 201 -   2232465 AGATGAAGGAGC---AGATTTCCGTCCTTCTAGTTTGTtagttcacaaaatttaggtgcatctgaatcatctgaagggcctattgaactatatattggacacat-ctgctccaaatttctaatttagtagttcttaggtaggaccagagaatttacagttctaacaggtttccagattatgctaatggagatcctaggaccaaat------------
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I

a score=811149.000000
s hg38.chr6_GL000254v2_alt    142517 73 +   4827813 TACAAGAGACCCAGCTTGTCTTGTCTGAGACTTTTGTGA------------CTCACTGAGTCTCTGAATGGGCTCAGCATTTTCT
s panTro5.chr6              29123651 73 + 175400573 TACAAGAGACCCAGCTTGTCTTGTCTGAGACTTTTGTGA------------CTCACTGAGTCTCTGAATGGGCTCAGCATTTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29357995 73 + 173848474 TACAAGAGACCCAGCTTGTCTTGTCTGAGACTTTTGTGA------------CTCACTGAGTCTCTGAATGGGCTCAGCATTTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5158197 73 +   6154872 TACAAGAGACCCAGCTTGTCTTGTCTGAGACTTTTGTGA------------CTCACTGAGTCTCTGAACGGTCTCAGCATTTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74159464 73 + 122973662 TACAAGAGACCCGGCTTGTCTTGCCTGAGACTTTTGTGA------------CTCACTGAGTCTCTGGATGGGCTCAGCATTTTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29335579 73 + 172585720 TACAAGAGACCCGGCTTGTCTTGCCTGAGACTTTTGTGA------------CTCACTGAGTCTCTGGATGGGCTCAGCATTTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28996183 73 - 170955103 TACAAGAGACCCGGCTTGTCTTGCCTGAGACTTTTGTGA------------CTCACTGAGTCTCTGGATGGGCTCAGCATTTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1973022 73 -   2996164 TACAAGAGACCCGGCTTGTCTTGCCTGAGACTTTTGTGA------------CTCACTGAGTCTCTGGATGGGCTCAGCATTTTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1845320 73 -   2157725 TACAAGAGACCCGGCTTGTCTTGCCTGAGACTTTTGTGA------------CTCACTGAGTCTCTGGATGGGCTCAGCATTTTCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28295615 73 -  71996105 TACAAGAGACCTGGCTTGTCTTGCCTGAGACTTTTGTGA------------CTCACTGAGTCTCTGGATGGGCTCAGCATTTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1973639 73 +   2316924 TACAAGAGACCCGGCTTGTCTTGCCTGAGACTTTTGTGA------------CTCACTGAGTCTCTGGATGGGCTCAGCATTTTCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1853954 73 -   3067355 TACAAGAGACCCGGCTTGTCTTGCCTGAGACTTTTGTGA------------CTCACTGAGTCTCTGGATGGGCTCAGCATTTTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171382255 73 - 171630274 CGTAAGAGACCTGGCTTGTCTTGCCTGAGACTTTTGTGA------------CCCACTGAGTCTCTGGATGGGCTCAGCATGTGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            208845 73 -    375362 CACAAGAGACCTGGCTTGTCTTGCCTGAGACTTTTGTGA------------CCCACTGAGTCTCTGGATGGGCTCAGCATGTGCT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      207491 73 -    373274 CACAAGAGACCTGGCTTGTCTTGCCTGAGACTTTTGTGA------------CCCACTGAGTCTCTGGATGGCCTCAGCATGTGCT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      146308 73 -    285216 CACAAGAGACCCGGCTTGTCTTGCCTGAGACTTTTGTGA------------CCCACTGAGTCTCTGGATGGGCTCAGCATGTGCT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1518742 66 -   2232465 -------------------cttgCCTAAGACTCTTGTGACATTAAGAGAGTCTCACTGAGTTCCTGGATAGGCTCAACATCTTCT
i otoGar3.GL873742         C 0 C 0
e proCoq1.NW_012147953v1      935419 75 -   3516910 I
e canFam3.chr35             25870850 854 +  26524999 I

a score=636398.000000
s hg38.chr6_GL000254v2_alt    142590 53 +   4827813 CAGGTGCATCTCTTAAACTGTATGTTTGAAGTTCGTTAGTCACATACAGCTGC
s panTro5.chr6              29123724 53 + 175400573 CAGGTGCATCTCTTAAACTGTATGTTTGAAGTTCGTTAGTCACATACAGCTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29358068 53 + 173848474 CAGGTGCATCTCTTAAACTGTATGTTTGAAGTTCGTTAGTCACATACAGCTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5158270 53 +   6154872 CAGGTGCATCTCTTAAACTGTATGTTTGAAGTTCGTTAGTCACATACAGCTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74159537 53 + 122973662 CAGGTGCATCTCCTAAACTGTATGTTTGAAGTTCGTTAGTCACATACAGCTGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29335652 53 + 172585720 CAGGTGCATCTCCTAAATTGTATGTTTGAAGTTCGTTAGTCACATACACCTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28996256 53 - 170955103 CAGGTGCATCTCCTAAATTGTATGTTTGAAGTTCGTTAGTCACATACACCTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1973095 53 -   2996164 CAGGTGCATCTCCTAAATTGTATGTTTGAAGTTCGTTAGTCACATACACCTGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1845393 53 -   2157725 CAGGTGCATCTCCTAAATTGTATGTTTGAAGTTCGTTAGTCACATACACCTGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28295688 53 -  71996105 CAGGTGCATCTCCTAAACTGTATGTTTGAAGTTTGTTAGTCACATACACCTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1973712 53 +   2316924 CAGGTGCATCTCCTAAATTGTATGTTTGAAGTTCGTTACTCACATACACCTGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1854027 53 -   3067355 CAGGTGCAGCTCCTAAACTGTATGTTTGAAGTTCGTTAGTCACATACACCTGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171382328 53 - 171630274 CAGGTGTATCTCCTAAATGGTGTGTTAGAAGTTGGTTAGTCACATGCAGCTGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            208918 53 -    375362 CAGGTGTGTCTCCTAAACAGTATGTTTGAAGTTCATTAGTCACATGCAGCTAC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      207564 53 -    373274 CAGGTGTATCTCCTAAACAGTATGTTTCAAGTTCGTTAGTCACATGCAGCTAC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      146381 53 -    285216 CAGAAGTATCTCCTAAACGGTATGTTTGAAGTTCGTTAGTCACATGCAGCTGC
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      935494 53 -   3516910 TGGGTGCATCTCCTAAAGTGTATGTTTGAAGTTCTTTGGTCACATACAGCTGC
i proCoq1.NW_012147953v1   I 75 I 141
s otoGar3.GL873742           1518808 53 -   2232465 TGGGCACATCTCCTAAACTGTATATTTGAAGTTCTTTGGTCACTTACAGCCAC
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I

a score=1330387.000000
s hg38.chr6_GL000254v2_alt    142643 146 +   4827813 TCTTTGAAACTGTCATAAGGAAGCCAACCCATCTGGTTGTCAGAGAGCAGTGTTAAATGCTCACACAAGAGGCAAGGCTGCATAGGGTTGGGCAGCTCCAGTTGCAGAAGGAAACACCAATTTAGCATGT----TTGCTTTCTTGC-TTTT
s panTro5.chr6              29123777 146 + 175400573 TCTTTGAAACTGTCTTAAGGAAGCCAACCCATCTGGTTGTCAGAGAGCAGTGTTAAATGCTCACACAAGAGGCAAGGCTGCATAGGGTTGGGCAGCTCTAGTTGCAGAAGGAAACACCAATTTAGCATGT----TTGCTTTCTTGC-TTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29358121 146 + 173848474 TCTTTGAAACTGTCATAAGGAAGCCAACCCATCTGGTTGTCAGAGAGCAGTGTTAAATGCTCACACAAGAGGCAAGGCTGCATAGGGTTGGGCAGCTCCAGTTGCAGAAGGAAACACCAATTTAGCATGT----TTGCTTTCTTGC-TTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5158323 146 +   6154872 TCTTTGAAACTGTCATAAGAAAGCCAACCCATCTGGTTGTCAGAGAGCAGTGTTAAATGCTCACACAAGAGGCAAGGCTGCATAGGGTTGGGCAGCTCCAGTTGCAGAAGGAAACACCAATTTAGCATGT----TTGCTTTCTTGC-TTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74159590 146 + 122973662 TCTTTGAAACTGTCGCAAGGAAGCCAACCCATCCGATTGTCAGAGAGCAGTGTTAAATGCTCACAGAAGAGGCAAGCGTGCTTAGGGTTGGGCAGCTCCAGTTGCAGAAGGAAACACCAATTTAGCATGT----TTGCTTTCTTGC-TTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29335705 146 + 172585720 TCTTTGAAACTGTCACAGGGAAGCCAACCCATCTGGTTGTCAGGGAGCAGTGGTAAATGCTCTCACAAGAGGCAAGCCTGCCTAGGGCTGGGCAGCTCCGGTTGCAGAAGGAAACACCAATTTAGCATGT----TTGATTGCTTGC-TTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28996309 146 - 170955103 TCTTTGAAACTGTCACAGGGAAGCCAACCCATCTGGTTGTCAGGGAGCAGTGGTAAATGCTCTCACAAGAGGCAAGCCTGCCTAGGGCTGGGCAGCTCCGGTTGCAGAAGGAAACACCAATTTAACATGT----TTGATTGCTTGC-TTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1973148 147 -   2996164 TCTTTGAAACTGTCACAGGGAAGCCAACCCATCTGGTTGTCAGGGAGCAGTGGTAAATGCTCTCACAAGAGGCAAGCCTGCCTAGGGCTGGGCAGCTCCGGTTGCAGAAGGAAACACCAATTTAGCATGT----TTGATTGCTTGCTTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1845446 146 -   2157725 TCTTTGAAACTGTCACAGGGAAGCCAACCCATCTGGTTGTCAGGGAGCAGTGGTAAATGCTCTCACAAGAGGCAAGCCTGCCTAGGGCTGGGCAGCTCCGGTTGCAGAAGGAAACACCAATTTAGCATGT----TTGATTGCTTGC-TTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28295741 150 -  71996105 TCTTTGAAACTGTCACAGGGAAGCCAACCCATCTGGTTGTCAGGGAGCAGTGGTAAATGCTCTCACAAGAGGCAAGCCTGCTTAGGGCTGGGCAGCTCCGGTTGCAGAAGGAAACACCAATGTAgcatgtttgcttgcttgcttgc-tttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1973765 146 +   2316924 TCTTTGAAACTGTCACAGGGAAGCCAACCCATCTGGTTGTCAGGGAGCAGTGGTAAATGCTCTCACAAGAGGCAAGCCTGCCTAGGGCTGGGCAGCTCCGGTTGCAGAAGGAAACACCCATTTAGCATGT----TTGATTGCTTGC-TTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1854080 146 -   3067355 TCTTTGAAACTGTCACAGGGAAGCCAACCCATCTGGTTGTCAGGGAGCAGTGGTAAATGCTCTCACAAGAGGCAAGCCTGCTTAGGGCTGGGCAGCTCCGGTTGCAGAAGGAAACACCAATTTAgcatgt----ttgcttgcttgc-tttt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171382381 137 - 171630274 TCTTGGAAACTGTCACAAGCCAGCCGTCTCATGTGGTCGTCAGGGTGCCGTGTT-AGTGCTCACAGAAGAGGCAACGCTGCTCAGGCCTGGGCAGCTCCAGTTGTAATAGGAAACACCAGCTTAGCTTGC------------TGGC-CTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            208971 136 -    375362 TCTTTGAAACTGTCACAAGGAAGCCATC-CATCTGGTTGTCAGGGAGCCATGTT-AGTGCTCACAGAAGAGGCAACCCTGCTTAGGCCTCAGCAGCTCCAGCTGCAATAGGAAACACAAACTTAGCTTGC------------TGGC-TTGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      207617 136 -    373274 TCTTTGAAACTGTCACAAGGAAGCCATC-CATCTGGTTGTCAGGGAGCCGTGTT-AGTGCTCACACAAGAGGCAACCCTGCTTAGGCCTCGGCAGCTCCAGTTGCAATAGGAAACACCAGCTTAGCTTGC------------TGGC-TTGT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      146434 137 -    285216 TCTTTGAAACTGTCACAAGGAAGCCATCCCATCTGGTTGTCAGGGAGCCGTGTT-AGTGCTCACAGAAGAGGCAGCCCTGCTTAGGCCTGGGCAGCTCCAGTTGCAATAGGAAACACCAACTTAGCTTGC------------TGGC-TTGT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1518861 145 -   2232465 CGTTCAAAACTAGTACAGGGAAGGCAACTTGTGTGGTTGGCAGGGAGCAGTGCTGGGTGTCTAAGCAAGAGGTGTTCCTACTTAGGCTTTGTCAGCTCTAGCTGCAGGGGCAAATACTGACTTAGTTTGC----TTGCTTGTTTGA-CTA-
i otoGar3.GL873742         C 0 C 0
e proCoq1.NW_012147953v1      935547 141 -   3516910 I
e canFam3.chr35             25870850 854 +  26524999 I

a score=581923.000000
s hg38.chr6_GL000254v2_alt    142789 56 +   4827813 TTTGCCTGCTTATTTTTAGCATATCTAGTTGAGAATCCAAAACAACAACAA---------------------AAAAA
s panTro5.chr6              29123923 56 + 175400573 TTTGCCTGCTTATTTTTAGCATATCTAGTTGAGAATCCAAAACAACAACAA---------------------AAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29358267 56 + 173848474 TTTGCCTGCTTATTTTTAGCATATCTAGTTGAGAATCCAAAACAACAACAA---------------------AAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5158469 56 +   6154872 TTTGCCTGCTTATTTTTAGCATATCTAGTTGAGAATCcaaaacaacaacaa---------------------aaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74159736 56 + 122973662 TTTGCCTGCTTATTTTTAGCACATCTAGTTGAGAATCCAAAACAACAACAG---------------------AAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29335851 51 + 172585720 TTTGCCTGCTTATTTTTAGCACATCTAGTTGAGAATCTAAAACAAC--------------------------AAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28996455 51 - 170955103 TTTGCCTGCTTATTTTTAGCACATCTAGTTGAGAATCTAAAACAAC--------------------------AAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1973295 51 -   2996164 TTTGCCTGCTTATTTTTAGCACATCTAGTTGAGAATCTAAAACAAC--------------------------AAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1845592 51 -   2157725 TTTGCCTGCTTATTTTTAGCACATCTAGTTGAGAATCCAAAACAAC--------------------------AAAAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28295891 51 -  71996105 tttgcctgcttATTTTTAGCATATCTAGTTGAGAATCCAAAACAAC--------------------------AAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1973911 51 +   2316924 TTTGCCTGCTTATTTTTAGCACATCTAGTTGAGAATCCAAAACAAC--------------------------AAAAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1854226 51 -   3067355 tttgcctgcttATTTTTAGCACATCTAGTTGAGAATCCAAAACAAC--------------------------AAAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171382518 54 - 171630274 TTTGCCTGCTCATTTTTAGCATGCCTAGTTGAGAATTCAAAACAACAGC-----------------------AAAAA
i calJac3.chr4             C 0 I 6
s saiBol1.JH378348            209107 56 -    375362 TTTGCCTGCTCATTTTTAGCATGTCTAGTTCAGAATTCAAAACAACAACAA---------------------AAAAA
i saiBol1.JH378348         C 0 I 6
s cebCap1.NW_016108108v1      207753 54 -    373274 TTTGCCTGCTCATTTTTAGCATGTCTAGTTGAGAATTCAAAACGACAAC-----------------------AAAAA
i cebCap1.NW_016108108v1   C 0 I 6
s aotNan1.NW_018494050v1      146571 54 -    285216 TTTGCCTGCTCACTTTTAGCATGTCTAGTTGAGAATTCAAAACAACAAC-----------------------AAAAA
i aotNan1.NW_018494050v1   C 0 I 21
s proCoq1.NW_012147953v1      935688 52 -   3516910 tttgcctgcttATTTTTAGCACATCTAGTTGGGAATCCAAGGCAAAA-------------------------AATAA
i proCoq1.NW_012147953v1   I 141 C 0
s otoGar3.GL873742           1519006 77 -   2232465 TTTGACTGCTTATTTTTAGCATACCTATTTGGGAACCCAAAGCaaaaaaaaaaaaaaaaaaaagaaagaaagaaaaa
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I

a score=19109.000000
s hg38.chr6_GL000254v2_alt    142845 4 +   4827813 GACA
s panTro5.chr6              29123979 4 + 175400573 GACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29358323 4 + 173848474 GACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5158525 4 +   6154872 gaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74159792 4 + 122973662 GAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29335902 4 + 172585720 AATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28996506 4 - 170955103 AATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1973346 4 -   2996164 AATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1845643 4 -   2157725 AAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28295942 4 -  71996105 AATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1973962 4 +   2316924 AATA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1854277 4 -   3067355 AATA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171382578 4 - 171630274 AAAG
i calJac3.chr4             I 6 I 11
s saiBol1.JH378348            209169 4 -    375362 AAAG
i saiBol1.JH378348         I 6 I 11
s cebCap1.NW_016108108v1      207813 4 -    373274 AACA
i cebCap1.NW_016108108v1   I 6 I 11
s proCoq1.NW_012147953v1      935740 4 -   3516910 GAAA
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1519083 4 -   2232465 gaaa
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I
e aotNan1.NW_018494050v1      146625 21 -    285216 I

a score=124475.000000
s hg38.chr6_GL000254v2_alt    142849 12 +   4827813 AGACAGACCACA
s panTro5.chr6              29123983 12 + 175400573 AGACAGACCACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29358327 12 + 173848474 AGACAGACCACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5158529 12 +   6154872 agacaGACCACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74159796  5 + 122973662 AGACA-------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29335906 12 + 172585720 AGACAGACCACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28996510 12 - 170955103 AGACAGACCACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1973350 12 -   2996164 AGACAGACCACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1845647 12 -   2157725 AGACAGACCACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28295946 12 -  71996105 AGACAGACCACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1973966 12 +   2316924 AGACAGACCACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1854281 10 -   3067355 AGACAGAC--CA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171382593 11 - 171630274 AGACAGA-CACA
i calJac3.chr4             I 11 C 0
s saiBol1.JH378348            209184 12 -    375362 AGACAGACCACA
i saiBol1.JH378348         I 11 C 0
s cebCap1.NW_016108108v1      207828 12 -    373274 AGACAGACCACA
i cebCap1.NW_016108108v1   I 11 C 0
s aotNan1.NW_018494050v1      146646 12 -    285216 AGACAGACCACA
i aotNan1.NW_018494050v1   I 21 C 0
s proCoq1.NW_012147953v1      935744 12 -   3516910 AGACAGACTGTA
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1519087 12 -   2232465 aGACAGACTATA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25870850 854 +  26524999 I

a score=1292590.000000
s hg38.chr6_GL000254v2_alt    142861 126 +   4827813 GACAAATGTGTACACTTTACAAGATTCTCAA------GACAACAACAGCAACAAAGTTTCTGAGTTTATGAATCTAAGTAGCATTTTACTCCCAGGATCTGAAGTTCAAGTTCTGATCCCTGTGCACCCAAA
s panTro5.chr6              29123995 126 + 175400573 GACAAATGTGTACACTTTACAAGATTCTCAA------GACAACAACAGCAACAAAGTTTCTGAGTTTATGAATCTAAGTAGCATTTTACTCCCAGGATCTGAAGTTCAAGTTCTGATCGCTGTGCACCCAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29358339 126 + 173848474 GACAAATGTGTACACTTTACAAGATTCTCAA------GACAACAACAGCAACAAAGTTTCTGAGTTTATGAATCTAAGTAGCATTTTACTCCCAGGATCTGAAGTTCAAGTTCTGATCGCTGTGCACCCAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5158541 126 +   6154872 GATGAATGTGTACACTTTACAAGATTCTCAA------GACAACAACAGCAACAAAGTTTCTGAGTTTATGAATCTAAGTAGCATTTTACTCCCAGGATCTGAAGTTCAAGTTCTGATCCCTGTGCACCCAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74159801 122 + 122973662 ----AATGTGTACACTTTACAAGATTCTCAA------GACAACAACAACAACAAAGTTTCTGAATTTAGGAATCTAAGTAGCCTTTTACTCCCAGGATCTGAAGTTCAAGTTCTGATCCTTGTGCACCCAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29335918 122 + 172585720 GTCAAATGTGTACACTTTACAAGATTCTcaa------aacaacaacaacaacaaAGTTTCTGAGTTTAGGAATCTAAGTGGCCT----CTACCAAGATCTGAAGTTCAAGTTCTGATCCCTGTGCACCCAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28996522 122 - 170955103 GTCAAATGTGTACACTTTACAAGATTCTcaa------aacaacaacaacaacaaAGTTTCTGAGTTTAGGAATCTAAGTGGCCT----CTACCAAGATCTGAAGTTCAAGTTCTGATCCCTGTGCACCCAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1973362 122 -   2996164 GTCAAATGTGTACACTTTACAAGATTCTcaa------aacaacaacaacaacaaAGTTTCTGAGTTTAGGAATCTAAGTGGCCT----CTACCAAGATCTGAAGTTCAAGTTCTGATCCCTGTGCACCCAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1845659 122 -   2157725 GTCAAATGTGTACACTTTACAAGATTCTcaa------aacaacaacaacaacaaAGTTTCTGAGTTTAGGAATCTAAGTGGCCT----CTACCAAGATCTGAAGTTCAAGTTCTGATCCCTGTGCACCCAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28295958 122 -  71996105 GTCAAATGTGTACACTTTACAAGATTCTCAA------AAAAACAACAACAACAAAGTTTCTGAGTTTAGGAATCTACGTGGCCT----CTACCAAGATCTGAAGTTCAAGTTCTGATCCCTGTGCACCCAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1973978 122 +   2316924 GTCAAATGTGTACACTTTACAAGATTCTcaa------aacaacaacaacaacaaAGGTTCTGAGTTTAGGAATCTAAGTGGCCT----CTACAAAGATCTGAAGTTCAAGTTCTGATCCCTGTGCACCCAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1854291 122 -   3067355 GTCAAATGTGTACACTTTACGAGATTCTcaa------aacaacaacaacaacaaAGTTTCTGAGTTTGGGAATCTAAGTGGCCT----CTACCAAGATCTGAAGTTCAAGTTCTGATCCCTGTGCACCCAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171382604 118 - 171630274 GCCAAATGTGTATACTTCACAACATTCT--------------CAACACCAGCGAAGTTTCTGAGTTTAGGCATCTGAGGAGACTTTTGCTCCCAAGATCTGAAGTTCATGTTCTGATCCTTGTGCCCCCAAA
i calJac3.chr4             C 0 I 897
s saiBol1.JH378348            209196 130 -    375362 GACAAATGTGCATACTTCACAACATTCTCAAAGCAGCAACAACAACAGCAGCAAAG--TCTGTGTTTAGGCATCTAAGCAACCTTTTGCTCCCAAGATCTGAAGTTCAAGTTCTGATCCCTGTGCACTGAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      207840 132 -    373274 GACAAATGTGCATACTTCACAACATTCTCAAAGCAGCAGCAACAACAACAGCGAAGTTTCTGAGTTTAGGCATCTAAGTAGCCTTTTGCTCCCAAGATCCGAAGTTCAAGTTCTGATCCCTGTGCACCCAAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      146658 132 -    285216 GACAGATGTGTATACTTCACAACGTTCTCAAAGCAGCAGCAAAAACAACAGCGAAGTTTCTGAGTTTAGGCATCGAAGGAGCCTTTTGCTCCCAAGAGCTGAAGTTCAAGTTCTGATCCCTGTGCACCCAAA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      935756 119 -   3516910 GACAAATGCATACATTTTACAAGATTATCA-------GAAAAAAAAA----TGAATTTTCTGAGTTTGGGCATCCAAGCAGCTTTTTACTCCCAGGATCCGAGGTTCAA--TCTGATTCATGTACACCCAAA
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1519099 107 -   2232465 AACAAATGCATATATTTTTCAAGATTCTCA-------GAGAAAAACA---------TTTCTGAATTTAGGCAACTCAACAGCCTTTTACTCTCAGGATC-------CAA--TCTGATCCATGTACAACCAAA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25871704 113 +  26524999 GACAAATACGTATGCTTCACAAGATTCCCAG------AAAAAC--------CGAAGTTTCTAAATGTAGGCATCAAGGTA-TATTGTACTTAGAGGGTCCAAGGTTCGAGTTCT-CTCCGTGGGCATCA---
i canFam3.chr35            I 854 C 0

a score=731418.000000
s hg38.chr6_GL000254v2_alt    142987 66 +   4827813 TTACGTCTTTCTCCTCCAGGTAGAAAGCTATCAAAATCCAGCTTTTTCCTGGGCACGCTCTTTATA
s panTro5.chr6              29124121 66 + 175400573 TTACGTCTTTCTCCTCCAGGTAGAAAGCTATCAAAATCCAGCTTTTTCCTGGGCACGCTCTTTATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29358465 66 + 173848474 TTACGTCTTTCTCCTCCAGGTAGAAAGCTATCAAAATCCAGCTTTTTCCTGGGCACGCTCTTTATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5158667 66 +   6154872 TTACGTCTTTCTCCTCCAGGTAGAAAGCTACCAAAATCCAGCTTTTTCCTGGGCATGCTCTTTATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74159923 66 + 122973662 TTACTTCTTCTTCCTCCAGGTAGAAAGCTATCAAAATCCAGCTTTTTCATGGGCACACTCTTTATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29336040 66 + 172585720 TTACATCTTTCTCCTCCAGGTAGAAAGCTATCAAAATCCAGCTTTTTCCTGGGCACGCTCTTTATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28996644 66 - 170955103 TTACATCTTTCTCCTCCAAGTAGAAAGCTATCAAAATCCAGCTTTTTCCTGGGCACGCTCTTTATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1973484 66 -   2996164 TTACATCTTTCTCCTCCAGGTAGAAAGCTATCAAAATCCAGCTTTTTCCTGGGCACGCTCTTTATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1845781 66 -   2157725 TTACATCTTTCTCCTCCAGGTAGAAAGCTATCAAAATCCAGCTTTTTCCTGGGCACGCTCTTTATA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28296080 66 -  71996105 TTGCATCTTTCTCCTCCAGGTAGAAAGCTATCAAAATCCAGCTTTTTCCTGGGCATGCTCTTTATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1974100 66 +   2316924 TTACATCTTTCTCCTCCAGGTAGAAAGCTATCAAAATCCAGCTTTTTCCTGGGCACGCTCTTTATA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1854413 66 -   3067355 TTACATCTTTCTCCTCCAGGTAGAAAGCTATCAAAATCCAGCTTTTTCCTGGGCACGCTCTTTATA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            209326 65 -    375362 -CTCATCTTTTCCCTCCAAGTAGAAAGCTATCAAAACCCAACCTTTTCCTGGGCACGCTCTTTACA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      207972 65 -    373274 -CTCGTCTTTTTCCTCCGAGTAGAAAGCTATCAAAACCCAACTTTTTCCTGGGCACGCTCTGTATA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      146790 65 -    285216 -CTCATCTTTTTCCTCCGAGTAGAAAGCTATCAAAACCCAGCTTTTTCCTGAGCACACTCTTTATA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      935875 66 -   3516910 TTATGTCTTTCTTCTCCAGGTAGAAAGCTATCAAAACCTGGCTTGCTCCTGGGGATGCTCTATACA
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1519206 66 -   2232465 TTATGCCTTTCTCCTCCAGGTAGAAAGCTATCAAAACCTGCCTTGCTCCTGGAGACACTCTCTACA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25871817 66 +  26524999 CGAGATGTCTCTCTCCCGAGCCTACAGCCATCAAGCCCGGACCCAGCTCTGGAGGCTCCCCTTACA
i canFam3.chr35            C 0 I 27
e calJac3.chr4             171382722 897 - 171630274 I

a score=423803.000000
s hg38.chr6_GL000254v2_alt    143053 53 +   4827813 GCATATGCAGCTGACTCTTCTGCTACTGGCACACTGCTATTGGATAAAAAGA---------A
s panTro5.chr6              29124187 53 + 175400573 GCATATGCAGCTGACTCTTCTGCTACTGGCACACTGCTATTGGATAAAAAGA---------A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29358531 53 + 173848474 GCATATGCAGCTGACTCTTCTGCTACTGGCACACTGCTATTGGATAAAAAGA---------A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5158733 53 +   6154872 GCATATGCAGCTGACTCTTTTGCTACTGGCACACTGCTATTGGATAAAAAGA---------A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74159989 53 + 122973662 GCATATGCAGCTGGCTCTTCTGCTACTTGCACACTGCTATTGGATAAAAAGA---------A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29336106 53 + 172585720 GCATATGCAGCTGGCTCTTCTGCTACTGTCACACTGCTATTGCATAAAAAGG---------A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28996710 53 - 170955103 GCATATGCAGCTGGCTCTTCTGCTACTGTCACACTGCTATTGCATAAAAAGG---------A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1973550 53 -   2996164 GCATATGCAGCTGGCTCTTCTGCTACTGTCACACTGCTATTGCATAAAAAGG---------A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1845847 53 -   2157725 GCATATGCAGCTGGCTCTTCTGCTACTGTCACACTGCTATTGCATAAAAAGG---------A
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28296146 52 -  71996105 GCATATGCAGCTGGCTCTTCTGCTACTGTCATACTGCTATTGCAT-AAAAGA---------A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1974166 53 +   2316924 GCATATGCAGCTGGCTCTTCTGCTACTGTCACACTGCTATTGCATAAAAAGG---------A
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1854479 62 -   3067355 GCATATGCAGCTGGCTCTTCTGCTACTGTCACACTGCTATTGCATAAAAAGGAGTCTTGGCA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            209391 53 -    375362 GCAACTGCAATTGGCTCTTCCGTTACACACACAGTGCTATTGGATAAAAAGA---------A
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      208037 52 -    373274 GCATCTGCAATTGGCTCTT-CGTTACTCGCACACTGCTACTGGATAAAAAGA---------A
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      146855 51 -    285216 GCATCTGCAACTGGCTCTT-C-TTACTCACACACTGCTACTGGATAAAAAGG---------A
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      935941 53 -   3516910 GCGTTTGCTGCTGGCTCTTCTGCTGCCCACACACTGTTATTGGCTAGAAAGAT---------
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1519272 28 -   2232465 -TTTGTGTGGCTGGCTGTTCTGCTGCTCA---------------------------------
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25871883 27 +  26524999 I
e calJac3.chr4             171382722 897 - 171630274 I

a score=205894.000000
s hg38.chr6_GL000254v2_alt    143106 23 +   4827813 GTCTTggctgggcacagtggctc
s panTro5.chr6              29124240 23 + 175400573 GTCTTggccgggcacagtggctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29358584 23 + 173848474 GTCTTggccgggcacagtggctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5158786 23 +   6154872 GTCTTggccgggcacagtggctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74160042 23 + 122973662 GTCTTAgccggatgcagtggctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29336159 23 + 172585720 GTCTTggccgggcgcggtggctc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28996763 23 - 170955103 GTCTTggccgggcgcggtggctc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1973603 23 -   2996164 GTCTTggccgggcgcggtggctc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1845900 23 -   2157725 GTCTTggccgggcgcggtggctc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28296198 23 -  71996105 GTCTTggccgggcgcggtggctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1974219 23 +   2316924 GTCTTggccgggcgcggtggctc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1854541 23 -   3067355 GTCTTggccgggggcagtggctc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            209444 23 -    375362 GTCCCggccgggcgcagtggctc
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      208089 23 -    373274 CTCCTggccgggcatggtggctc
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      146906 23 -    285216 GTCCTggctgggcgcggtggctc
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1519300 21 -   2232465 GTCTC--CTTAACATagtggttc
i otoGar3.GL873742         C 0 I 75
e proCoq1.NW_012147953v1      935994  0 -   3516910 C
e canFam3.chr35             25871883 27 +  26524999 I
e calJac3.chr4             171382722 897 - 171630274 I

a score=2254393.000000
s hg38.chr6_GL000254v2_alt    143129 261 +   4827813 acacctgtaatcccagcattttgggagaccaaggcaggtggatctcctgaggtcaggagttggagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagcctcgtgtggtgtggcaggcgcctgtaatcccagctgctagggaggctgaggcaggagaatcgcttgaacctggga-gatgga-ggttgctgtgagccgagattgc-accattg-cactccagcctcagcgataagag-ctagactc
s panTro5.chr6              29124263 261 + 175400573 acacctgtaatcccagcattttgggagaccaaggcaggtggatctcctgaggtcaggagttggagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaacaattagcctcgtgtggtgtggcaggcgcctgtaatcccagctactagggaggctgaggcaggagaatcgcttgaacctggga-ggtgga-ggttgctgtgagccgagattgc-accattg-cactccagcctcagcgacaagag-ctagactc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29358607 261 + 173848474 acacctgtaatcccagcattttgggagaccaaggcaggtggatctcctgaggtcaggagttggagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaacaattagcctcgtgtggtgtggcaggcgcctgtaatcccagctactagggaggctgaggcaggagaatcgcttgaacctggga-ggtgga-ggttgctgtgagccgagattgc-accattg-cactccagcctcagcgacaagag-ctagactc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5158809 261 +   6154872 acacctctaatcccagcattttgggagaccaaggcaggtggatctcctgaggtcaggagttggagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagcctcgtgtggtgtggcaggcgcctgtaatcccagctactagggaggctgaggcaggagaatcgcttgaacctggga-ggtgga-ggttgctgtgagccgagattgc-accattg-cactccagcctcagcgacaagag-ctagactc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74160065 261 + 122973662 acacctgtaatcccagcactttgggagacccaggtgggcagatctcctgaggtcaggagttggagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagcctggtgtggtatggcaggcgcctgtaatcccagctactagagaggctgaggcagaagaatcgcttgaacctggga-ggtgga-ggttgcagtgaaccgagaccgc-accattg-cactccagcctcagcaacaagag-ctagactc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29336182 261 + 172585720 acacctgtaatcccagcactttgggagactgaggcggatggatctcctgaggtcaggagttggagaccagcctagccaacatggtgaaaccctgtctctactaaaaatacaaaaattagcctggtgtggtatggcaggcacctgtaatcccagctactagggaggccaaggcaggagagtcgcttgaacctggga-ggtgga-ggttgcagtgagccgagattgc-accattg-cactccagccttagcgacaagag-ctagactc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28996786 261 - 170955103 acacctgtaatcccagcactttgggagactgaggcgggtggatctcctgaggtcaggagttggagaccagcctagccaacatggtgaaaccctgtctctactaaaaatacaaaaattagcctggtgtggtgtggcaggcacctgtaatcccagctactagggaggccaaggcaggagagtcgcttgaacctggga-ggtgga-ggttgcagtgagccgagattgc-accattg-cactccagccttagcgacaagag-ctagactc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1973626 266 -   2996164 acacctgtaatcccagcactttgggagactgaggcgggtggatctcctgaggtcaggagttggagaccagcctagccaacatggtgaaaccctgtctctactaaaaatacaaaaattagcctggtgtggtgtggcaggcacctgtaatcccagctactagggaggccaaggcaggagagtcgcttgaacctgggagggtggatggttgcagtgagccgagattgcgaccattgccactccagccttagcgacaagagcctagactc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1845923 261 -   2157725 acacctgtaatcccagcactttgggagactgaggcgggtggatctcctgaggtcaggagttggagaccagcctagccaacatggtgaaaccctatctctactaaaaatacaaaaattagcctggtgtggtgtggcaggcacttgtaatcccagctactagggaggccaaggcaggagagtcgcttgaacctggga-ggtgga-ggttgcagtgagccgagattgc-accattg-cactccagccttagcgacaagag-ctagactc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28296221 261 -  71996105 acacctgtaatcccagcactttgggagaccgaggcgggtggatctcttgaggtcaggagttggagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagcctggtgtggtgtggcaggcgcctgtaatcccagctactagggaggccaaggcaggagagtcacttgaacctggga-agcgga-ggtcgcagtgagccgagattgc-accattg-cactccagccttagcgacaagag-ctagactc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1974242 261 +   2316924 acacctgtaatcccagcactttgggagactgaggctggtggatctcctgaggtcaggagttggagaccagcctagccaacatggtgaaaccctgtctctattaaaaatacaaaaattagcctggtgtggtgtggcaggcacctgtaatcccagctactagggaggccaaggcaggagagtcgcttgaacctggga-ggtgga-ggttgcagtgagccgagattgc-accattg-cactccagccttagcgacaagag-ctaggctc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1854564 261 -   3067355 acacctgtaatcccagcactttgagagaccgaggtgggtggatctcctgaggtcaggagttggagaccagcctagctaacatggtgaaaccccgtctctactaaaaatacaaaaattagcctggtgtggtgtggcaggcacctgtaatcccagctactagggaggccaaggcaggagagtcgcttgaacctggga-ggcgga-ggttgcagtgagccgagattgc-accattg-cacgccagccttagcgacaagag-ctagactc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            209467 248 -    375362 acacctgtaatcccagcactttgggaggctgaggcaggtggatctcctgaggtcaggagttggagaccagcctggccaacatggtgaaatcccatctctactaaaattacgaaaattagctgagcgtgatgtggcaggtgcctgtaatcccaactactaggaaggctgaggcaggagaattgcttgaacctggga-ggcgga-ggttgcagtgagaggagattgc-accactg-cactccagcctcagagac--------------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      208112 248 -    373274 acacctgtaatcccagcactttgggaggctgaggcaggtggatctcctgaggtcaggagttggagaccagcctggccaacatggtgaaaccccatctctactaaaattacgaacattagctgggcgtgatgtggcaggtgcctgtaatcccaactaacagggaggctgaggcaggagaattgcttgaatctggga-ggcgga-ggttgcagtgagctgagattgc-accactg-cactccagcctcagagac--------------
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      146929 259 -    285216 acacctgtaatcccagctctttgggaggctgaggcaggtggatcac--gaggtcaggagttggagaccagcctggccaacatggtgaaaccccatctccactaaaattacgaaaattagctgggcatggtgtggcaggtgcctgtaatcacaactactagggaggctgaggcaggagaattgcttgaacctggga-ggcgga-ggttgcagtgagctgagattgc-accactg-cactccaacctcagagacaagag-ggaaactc
i aotNan1.NW_018494050v1   C 0 I 7
e proCoq1.NW_012147953v1      935994   0 -   3516910 C
e canFam3.chr35             25871883  27 +  26524999 I
e otoGar3.GL873742           1519321  75 -   2232465 I
e calJac3.chr4             171382722 897 - 171630274 I

a score=54209.000000
s hg38.chr6_GL000254v2_alt    143390 7 +   4827813 caaagag
s panTro5.chr6              29124524 7 + 175400573 caaagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29358868 7 + 173848474 caaagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5159070 7 +   6154872 caaagag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74160326 7 + 122973662 caaagag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29336443 7 + 172585720 cAAAGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28997047 7 - 170955103 cAAAGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1973892 7 -   2996164 cAAAGAG
i macNem1.NW_012011356v1   C 0 I 401
s cerAty1.NW_012001495v1     1846184 7 -   2157725 cAAAGAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28296482 7 -  71996105 caaagag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1974503 7 +   2316924 caaagag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1854825 7 -   3067355 cAAAGAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            209715 5 -    375362 --aagag
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      208360 5 -    373274 --aagag
i cebCap1.NW_016108108v1   C 0 C 0
e proCoq1.NW_012147953v1      935994 0 -   3516910 C
e canFam3.chr35             25871883 27 +  26524999 I
e otoGar3.GL873742           1519321 75 -   2232465 I
e aotNan1.NW_018494050v1      147188 7 -    285216 I
e calJac3.chr4             171382722 897 - 171630274 I

a score=93388.000000
s hg38.chr6_GL000254v2_alt    143397 32 +   4827813 cgaaactccgtctttaaaaaaaaaaaaaaaaa
s panTro5.chr6              29124531 32 + 175400573 cgaaactccgtctttaaaaaaaaaaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29358875 28 + 173848474 cgaaactccgtctttaaaaaaaaaaaaa----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5159077 32 +   6154872 cgaaactccgtctttaaaaaaaaaaaaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74160333 32 + 122973662 cgaaactccgtctttaaaaaaaaaaaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29336450 27 + 172585720 CGATATTCCATCTT-AAAAAAAAAATAA----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28997054 27 - 170955103 CGATATTCCATCTT-AAAAAAAAAATAA----
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1846191 26 -   2157725 CGATATTCCGTCTT--AAAAAAAAATAA----
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28296489 28 -  71996105 cgaaattccgtcttaaaaaaaaaaaTAA----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1974510 28 +   2316924 cgatattccatcttaaaaaaaaaaaTAA----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1854832 27 -   3067355 CGAAATTCCGTCTT-AAGAAAAAAATAA----
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            209720 21 -    375362 ggaaactccatctc-aaaaaaa----------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      208365 16 -    373274 agaaactccatctc------aa----------
i cebCap1.NW_016108108v1   C 0 C 0
e proCoq1.NW_012147953v1      935994  0 -   3516910 C
e canFam3.chr35             25871883 27 +  26524999 I
e otoGar3.GL873742           1519321 75 -   2232465 I
e aotNan1.NW_018494050v1      147188  7 -    285216 I
e calJac3.chr4             171382722 897 - 171630274 I
e macNem1.NW_012011356v1     1973899 401 -   2996164 I

a score=546.000000
s hg38.chr6_GL000254v2_alt    143429 1 +   4827813 a
s panTro5.chr6              29124563 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5159109 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74160365 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
e proCoq1.NW_012147953v1      935994 0 -   3516910 C
e canFam3.chr35             25871883 27 +  26524999 I
e saiBol1.JH378348            209741 0 -    375362 C
e otoGar3.GL873742           1519321 75 -   2232465 I
e aotNan1.NW_018494050v1      147188 7 -    285216 I
e cebCap1.NW_016108108v1      208381 0 -    373274 C
e calJac3.chr4             171382722 897 - 171630274 I
e colAng1.NW_012115566v1     1854859 0 -   3067355 C
e manLeu1.NW_012104165v1     1974538 0 +   2316924 C
e chlSab2.chr17             28296517 0 -  71996105 C
e cerAty1.NW_012001495v1     1846217 0 -   2157725 C
e macNem1.NW_012011356v1     1973899 401 -   2996164 I
e macFas5.chr4              28997081 0 - 170955103 C
e rheMac8.chr4              29336477 0 + 172585720 C
e panPan2.chr6              29358903 0 + 173848474 C

a score=3916.000000
s hg38.chr6_GL000254v2_alt    143430 8 +   4827813 aaaaa-aaa
s panTro5.chr6              29124564 5 + 175400573 aaaaa----
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5159110 9 +   6154872 aaaaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74160366 6 + 122973662 aaaaa---a
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378348            209741 9 -    375362 aaaaaaaaa
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      208381 9 -    373274 aaaaaaaaa
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      147195 9 -    285216 aaaaaaaaa
i aotNan1.NW_018494050v1   I 7 C 0
s canFam3.chr35             25871910 8 +  26524999 AGAAACAC-
i canFam3.chr35            I 27 C 0
e proCoq1.NW_012147953v1      935994 0 -   3516910 C
e otoGar3.GL873742           1519321 75 -   2232465 I
e calJac3.chr4             171382722 897 - 171630274 I
e colAng1.NW_012115566v1     1854859 0 -   3067355 C
e manLeu1.NW_012104165v1     1974538 0 +   2316924 C
e chlSab2.chr17             28296517 0 -  71996105 C
e cerAty1.NW_012001495v1     1846217 0 -   2157725 C
e macNem1.NW_012011356v1     1973899 401 -   2996164 I
e macFas5.chr4              28997081 0 - 170955103 C
e rheMac8.chr4              29336477 0 + 172585720 C
e panPan2.chr6              29358903 0 + 173848474 C

a score=535655.000000
s hg38.chr6_GL000254v2_alt    143438 60 +   4827813 GTCTCAAGCGCAGAACCGT--------GAAAAAGCTAAAGTTGTTATACAATTGGAGAGCGAATGATT
s panTro5.chr6              29124569 60 + 175400573 GTCTCAAGCGCAGAACCGT--------GAAAAAGCTAAAGTTGTTATACAATTGGAGAGCGAATGATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29358903 60 + 173848474 GTCTCAAGCGCAGAACCGT--------GAAAAAGCTAAAGTTGTTATACAATTGGAGAGAGAATGATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5159119 60 +   6154872 GTCTCAAGCGCAGAACCGT--------GAAAAAGCTAAAGTTGTTATACAACTGGAGAGTGAATGATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74160372 60 + 122973662 GTCTCAAGCGCAGAACCGT--------GAAAAAGCTAGAGTTGTTATACAATTGGAGAGCTAATGATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29336477 60 + 172585720 GTCTCAAGGGCAGAACCAT--------GAAAGAGCTAGAGTTGTCGTACAATTGGAGAGCTAATGATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28997081 60 - 170955103 GTCTCAAGGGCAGAACCAT--------GAAAGAGCTAGAGTTGTCGTACAATTGGAGAGCTAATGATT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1846217 60 -   2157725 GTCTCAAGGGCAGAACCAT--------GAAAGAGCTAGAGTTGTCGTACAATTGGAGAGCTAATGATT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28296517 60 -  71996105 GTCTCAAGGGCAGAACCAT--------AAAAGAGCTAGAGTTGTCGTATAATTGGAGAGCTAATGATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1974538 60 +   2316924 GTCTCAAGGGCAGAACCAT--------GAAAGAGCTAGAGTTGTCGTACAATTGGAGAGCTAATGATT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1854859 60 -   3067355 GTCTCAAGGGCAGAACCAT--------GAAAGAGCTAGAGTTGTCATACAATTGGAGAGCTAATGATT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            209750 60 -    375362 GTCTCAAGAGCAGAACCGT--------GAAGAAGCTAAAGTTGTCATACAATTGGAGAGCTAATGATT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      208390 60 -    373274 GTCTCAAGAACAGAACCGT--------GAAAAAGCTAAAGTTGTCATACAATTGGAGAGCTAATGATT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      147204 60 -    285216 GGCTCAAGAGCAGACCTGT--------GAAAAAGCTAAAGTTTTCATACAATTGGAGAGCTAATGATT
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      935994 59 -   3516910 GTCTCGAGAGCAGAACTGT--------GAGTAAGCTAGGGTTGCTACACAATTGGAGAGC-AATGGTT
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1519396 59 -   2232465 gttgctCTAGTAGAACTAC--------AAGTGAGCTAGGGATGCTGCACAATTGGAGGGT-AATAGTT
i otoGar3.GL873742         I 75 C 0
s canFam3.chr35             25871918 64 +  26524999 TTCTGAAGAGCAGAATTGGGGGTTAAAGGGAGAGCCAGGGTGGCCTTAGGATTGCAG----AACGGTT
i canFam3.chr35            C 0 C 0
e calJac3.chr4             171382722 897 - 171630274 I
e macNem1.NW_012011356v1     1973899 401 -   2996164 I

a score=2330780.000000
s hg38.chr6_GL000254v2_alt    143498 252 +   4827813 CAACATTTTGTTAATCATTGAC------CTTATTCTCTGTCCTACTCTAAGGAGGGCATAATGTGTGTCTCCTGCAATCGGTCATAGGAATAATGCTTAAGGTCTAAACTAGCAGAGACTTGAGTGAC--------AAAAAAC--------A-----------AAGAAGG-----AACCTATTTGAACTGGAGAAAGAAGGTGGATGCTGCAGGATTGAGAGACTTTATGGATTTTAAAAGAAACAAAGATGGAGAGTGTCCTCAGGAA--aca------------cacacaca-cac--------------------------acaca----------ca
s panTro5.chr6              29124629 250 + 175400573 CAACATTTTGTTAATCATTGAC------CTTATTCTCTGTCCTACTCTAAGGAGGGCATAATGTGTGTCTCCTGCAATCGGTCATAGGAATAATGCTTAAGGTCTAAACTAGCAGAGACTTGAGTGAC--------AAAAAAC--------A-----------AAGAAGG-----AATCTATTTGAACTGGAGAAAGAAGGTGGATGCTGCAGGATTGAGAGACTTTATGGATTTTAAAAGCAACAAAGATGGAGAGTGTCCTCAGGAA--aca------------cacacaca-cac--------------------------acaca------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29358963 262 + 173848474 CAACATTTTGTTAATCATTGAC------CTTATTCTCTGTCCTACTCTAAGGAGGGCATAATGTGTGTCTCCTGCAATCGGTCATAGGAATAATGCTTAAGGTCTAAACTAGCAGAGACTTGAGTGAC--------AAAAAAC--------A-----------AAGAAGG-----AATCTATTTGAACTGGAGAAAGAAGGTGGATGCTGCAGGATTGAGAGACTTTATGGATTTTAAAAGCAACAAAGATGGAGAGTGTCCTCAGGAA--aca------------cacacaca-cac--------------------------acacacacacacacaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5159179 251 +   6154872 CAACATTTTGTTAATCATTGAC------CTTATTCTCTGTCCTACTCTAAGGAGGGCATAATGTGTGTCCCCTGCAATCGGTCATAGGAATAATGCTTAATGTCTAAACTAGCAGAGACTTGAGTGAC-------AAAAAAAC--------A-----------AAGAAGG-----AACCTATTTGAACTGGAGATAGAAGGTGGATGCTGCAGGACTGAGAGACTTTATGGATTTTAAAAGCAACAAAGATGGAGAGTGTCCTCAGGAA--aca------------cacacaca-cac--------------------------acaca------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74160432 248 + 122973662 CCACATTTTGTTAATCATTGAC------CTTATTCTCTGTCCTACTCTAAGGAGGGCATAATGTGTGTCTCCTGCAATCGGTCATAGGAATAATGCTTAAGGTCTAAACTAGCAGAGACTTTAGTGAT--------AAAAAAC--------A-----------AAGAAGG-----AACCTATTTGAACTGGAGAAAGAAGGTGGATGCTGCAGGATTGAGAGACTTTATGGATTTTAAAAGCAACAAAGATGGAGAGTGCCCTCAGGAA--aca------------cacacaca-cac--------------------------aca--------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29336537 246 + 172585720 CAACATTTTGTTAATCATTGAC------CTTGTTCTGTGTCCTACTCTAAGGAGGGCATAATGTGTGTCTCCTGCAATCGGTGGTAGGAACAATGCTTAAGGTCTAAACTAGCAGATACTTTAGTGAT--------AAAAAAC--------A-----------AAGAAGG-----AACCTATTTGAACTGGAAAAAGAAGGTGGATACTGCAGGATTCAGAGACTTTATGGATTTTAAAAGCAACAAAGATGGAACATGTCCTCAGGAA--ACA------------CACACACA-CAC--------------------------A----------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28997141 246 - 170955103 CAACATTTTGTTAATCATTGAC------CTTGTTCTCTGTCCTACTCTAAGGAGGGCATAATGTGTGTCTCCTGCAATCGGTGGTAGGAACAATGCTTAAGGTCTAAACTAGCAGATACTTTAGTGAT--------AAAAAAC--------A-----------AAGAAGG-----AACCTATTTGAACTGGAAAAAGAAGGTGGATACTGCAGGATTCAGAGACTTTATGGATTTTAAAAGCAACAAAGATGGAACATGTCCTCAGGAA--ACA------------CACACACA-CAC--------------------------A----------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1974300 246 -   2996164 cAACATTTTGTTAATCATTGAC------CTTGTTCTCTGTCCTACTCTAAGGAGGGCATAATGTGTGTCTCCTGCAATCGGTGGTAGGAACAATGCTTAAGGTCTAAACTAGCAGATACTTTAGTGAT--------AAAAAAC--------A-----------AAGAAGG-----AATCTATTTGAACTGGAAAAAGAAGGTGGATACTGCAGGATTCAGAGACTTTATGGATTTTAAAAGCAACAAAGATGGAGCATGTCCTCAGGAA--ACA------------CACACACA-CAC--------------------------A----------------
i macNem1.NW_012011356v1   I 401 C 0
s cerAty1.NW_012001495v1     1846277 246 -   2157725 CAACGTTTTGTTAATCATTGAC------CTTGTTCTCTGTCCTACTCTAAGGAGAGCATAATGTATGTCTCCTGCAATCGGTGGTAGGAACAATGCTTCAGGTCTAAACTAGCAGAGACTTTAGTGAT--------AAAAAAG--------A-----------AAGAAGG-----AACCTATTTGAACTGGAAAAAGAAGGTGGATACTGCAGAATTCAGAGACTTTATGGATTTTAAAAGCAACAAAGATGGAACATGTCCTCAGGAA--ACA------------CACACACA-CAC--------------------------A----------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28296577 249 -  71996105 CAATATTTTGTTAATCATTGAC------CTTGTTCTCTGTCCTACTCTAAGGAGGGCATAATGTGTGTCTCCTACAATCGGTCGTGGGAACAATGCTTAAGGTCTAAACTAGCAGAGACTTAAGTGAT-------AAAAAAAC--------A-----------AAGAAGG-----AACCTATTTGAACTGGAAAAAGAAGGTGGATGCTGCAGGATTCAGAGACTTTATGGATTTTAAAAGCGACAAAGATGGAACATGTCGTCAGGAAacaca------------cacacaca-cac--------------------------a----------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1974598 246 +   2316924 CAACATTTTGTTAATCATTGAC------CTTGTTCTCTGTCCTACTCTAAGGAGGGCATAATGTGTGTCTCCTGCAATCGGTGGTAGGAACAATGCTTAAGGTCTAAACTAGCAGAGACTTTAGTGAT--------AAAAAAC--------A-----------AAGAAGG-----AACCTATTTGAACTGGAAAAAGAAGGTGGATACTGCAGGATTCAGAGACTTTATGGATTTTAAAAGCAACAAAGATGGAACATGTCCTCAGGAA--ACA------------CACACACA-CAC--------------------------A----------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1854919 248 -   3067355 CAACATTTTGTTAATCATTGAC------CTTGTTCTCTGTCCTACTCTAAGGAGGGCATAATGTGTGTCTCCTGCAATTGGTCCTGGGAACAATGCTTAAGGTCTAAACTAGCAGAGACTTTAGTGAT--------AAAAAAC--------A-----------AAGAAGG-----AACCTATTTGAACTGGAAAAAGAAGGTGGATGCTGCAGGATTCAGAGACTTTATGGATTTTAAAAGCAACAAAGATGGAATATGTCCTCAGGAAacaca------------cacacaca-cac--------------------------a----------------
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            209810 238 -    375362 CAACATTTTGTTAAACATTGAC------CTTGTTCTGTGTTCTATTCTAACGAAGGCATAATAAATGTCTCCTGCAATCGGTCATAGGAACAATGCTCAAGGTCTAAACTAGCAGAGACTTCAGTGATTACaaaaaaaaaaaa--------aaaaaaaaaaacaagaaag-----aaCCCATTTGAACTGGAGAA-----------------------------------------AGAAGCAAGAAAGGTGGAGAGTGTCCTCAGGAA--aca------------cacacaca-cac--------------------------ccacacacacacacG--
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      208450 264 -    373274 CAACATTTTGTTAAACATTGAC------CTTGTTCTCTGTTCTAGTCTAACGAAGGCAAAATAAATGTCTCCTGCAATCAGTCATAGGAACAATGCTTAAGGTCTAAACTAGCAGAGACTTCAGTGATTACaaaaaaaaaaaa--------ga----------aagaaag-----aaaCTATTTGAACTGGAGAATGAAGGTGGATGCCACAGGATTCAGA-------------TTAAAAGCAAGAAAGGTGGAGAGTGTCCTCAGGAA--acacacaca----ctcacacaca-cac--------------------------acacacacacacacG--
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      147264 293 -    285216 CAACATTTTGTTAATCATTGAC------CTTGTTCTCTGTTCTATTCTAACGAAGGCATAACAAATGTCTCCTGCAATTGGTCATAGGAACAATGCTTAAGGTCTAAACTAGCAGAGACTTCAGTGATTACaaaaaaaaaaag--------a-----------aagaaag-----aaCCTATTTGAACTGGAGAAAGAAGGTGGATGCCACAGGATTCTGA-------------TTAAAAGCAAGAAAGGTGGAGAGTGTCCTCAGGAG--acacacacacactctcacacaca-ctcgtgcacacacatacacactcacacttacacacacacacaca--
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      936053 245 -   3516910 CAACATTTTGTCAGTCATCGAC------CCTATTCTCTGTCCTACTGTAAGGAAGGCATAATGGGTGGCTCCTGCAATCAGT----GGAACAATGCTTGAGGTCTATACTAGCAAAGACTTTAGAGAT--------AAAA-----------A-----------AAGAAAG-----AACCTGTATGCACTGGAAAAGGAAGGTGGGTGCTGCAGGATTTAGAGACTCCATGGATTTGCAGACCAAGAAAGATGGAGAGTGTCTTCAGGAA--ata------------aacacaca-cac--------------------------acataca----------
i proCoq1.NW_012147953v1   C 0 I 65
s otoGar3.GL873742           1519455 267 -   2232465 CAACATTTTGTTAATAATCAACCCTATTCCTATTCTCTGTCCTACTCTAAGACAGGCATAATGGGTGGCTCCTGTAGTCAGT----GGAACAGTGCTTAAGGTCTACACTATCATAGGCTTTAGggaa--------ggaaggaagggaggga-----------gggaaagaggCAAACCTGTATGAGCTGGAGAAGGAAGGTGGGTGCCACAGGATTTAGAGACTCTATGGATTTGCAGAACTAGAAAAATGAAGAATGTCCTCAGAAA--ATA------------CACACACA-GAG--------------------------AGAAGTA----------
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25871982 203 +  26524999 CAGGGTTTTGTGGATCCGGAAC------CCTGTTC--TGCCCTCTAGGGAAGGAGGCCTGGTGCGTGGTACC---------------------AGCTCAAGGTCTCCACTAGCAGAGGCTTTAGAGAC------------GGG--------A-----------AGAATAG-----GATCT-TCTGAACAGGAGACGGAAAGTGGA----ACAGGATTTAGTGTGTTGATGGATTTGACAA------------GAGCATGCACTCAAGGA--ATA------------CACACAGAGCTT--------------------------G----------------
i canFam3.chr35            C 0 C 0
e calJac3.chr4             171382722 897 - 171630274 I

a score=150470.000000
s hg38.chr6_GL000254v2_alt    143750 18 +   4827813 GGTAGTGTAAGAGA--TGGA
s panTro5.chr6              29124879 18 + 175400573 GGTAGTGTAAGAGA--TGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29359225 18 + 173848474 cGTAGTGTAAGAGA--TGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5159430 18 +   6154872 GGTAGTGTAAGAGA--TGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74160680 20 + 122973662 GGTAGTGTAAGAGAGGTGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29336783 20 + 172585720 GGTAGTGTAAGAGATGTGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28997387 20 - 170955103 GGTAGTGTAAGAGATGTGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1974546 20 -   2996164 GGTAGTGTAAGAGATGTGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1846523 20 -   2157725 GGTAGTGTAAGAGATGTGGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28296826 20 -  71996105 GGTAGTGGAAGAGATGTGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1974844 20 +   2316924 GGTAGTGTAAGAGATGTGGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1855167 20 -   3067355 GGTAGTGTAAGAGATGTGAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            210048 20 -    375362 GGTAGTGTGAGTGATGTGGA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      208714 20 -    373274 GGTAGTGTGAGTGATGTGGA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      147557 20 -    285216 GGTAGTGTGAGTGATGTGGA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1519722 16 -   2232465 ----GCTTGAATTATGTGGA
i otoGar3.GL873742         C 0 I 3
s canFam3.chr35             25872185 11 +  26524999 ---------ACTAATGTGGA
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012147953v1      936298 65 -   3516910 I
e calJac3.chr4             171382722 897 - 171630274 I

a score=1444220.000000
s hg38.chr6_GL000254v2_alt    143768 137 +   4827813 ---TGTTGCCTTTCACCAAACTATTAAGTAGAGAAGGAGAAGCAGGAATTATGCTTGTTTGTTTGTTTTTATTTGTGGGAAGTAGGATGGTATCCAGAAGGGGATGAAGCT--GTTTGGTTTTGGACAAGAA-TTTAAAATAC
s panTro5.chr6              29124897 137 + 175400573 ---TGTTGCCTTTCACCAAACTATTAAGTAGAGAAGGAGAAGCAGGAATTATGCTTGTTTGTTTGTTTTTATTTGTGGGAAGTAGGATGGTATCCAGAAGGGGATGAAGCT--GTTTGGTTTTGGACAAGAA-TTTAAAATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29359243 136 + 173848474 ---TGTTGCCTTTCACCAAACTATTAAGTAGAGAAGGAGAAGCAGGAATTATGCTTGTTTGTTTG-TTTTATTTGTGGGAAGTAGGATGGTATCCAGAAGGGGATGAAGCT--GTTTGGTTTTGGACAAGAA-TTTAAAATAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5159448 137 +   6154872 ---TGTTGCCTTTCACCAAACTATTAAGTAGAGAAGGAGAAGCAGGAATTATGCTTGTTTGTTTGTTTTTATTTGTGGGAAGTAGGATGGTATCCAGAAGGGGATGAAGCT--GTTTGGTTTTGGACAAGAA-TTTAAAATAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74160700 137 + 122973662 ---TGTTGCCTTTCACCAAACTATTAAGTAGAGGAGGAGAAGCAGGAATTATGCTTGTTTGTTTGTTTTTATTTGTGGGAAGTAGGATGGTATCCAGAAGGGGATGAAGCT--GTTTGGTTTTGGACAAGAA-TTTAAAATAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29336803 133 + 172585720 ---TGTTGCCTTTGACCAAACTATTAGATAG---AGGAGAAGCAGGAATTATGCTTGTTTGTTTGTTTTTATTTGT-GGAAGTAGGATGGTATCCAGAAGGGGATGAAGCT--GTTTGGTTTTGGACAAGAA-TTTAAAATAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28997407 133 - 170955103 ---TGTTGCCTTTGACCAAACTATTAGATAG---AGGAGAAGCAGGAATTATGCTTGTTTGTTTGTTTTTATTTGT-GGAAGTAGGATGGTATCCAGAAGGGGATGAAGCT--GTTTGGTTTTGGACAAGAA-TTTAAAATAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1974566 133 -   2996164 ---TGTTACCTTTGACCAAACTATTAGATAG---AGGAGAAGCAGGAATTATACTTGTTTGTTTGTTTTTATTTGT-GGAAGTAGGATGGTATCCAGAAGGGGATGAAGCT--GTTTGGTTTTGGACAAGAA-TTTAAAATAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1846543 133 -   2157725 ---TGTTGCCTTTCACCAAACTATTAGATAG---AGGAGAAGCAGGAATTATGCTTGTTTGTTTGTTTTTATTTGT-GGAAGTAGGATGGTATCCAGAAGGGGATGAAGCT--GTTTGGTTTTGGACAAGAA-TTTAAAATTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28296846 133 -  71996105 ---TGTTGCCTTTCACCAAACTATTAGATAG---AGGAGAAGCAGGAATTATGCTTGTTTGTTTGTTTTTATTTGT-GGAAGTAGGATGGTATCCAGAAGGGGATGAAGCT--GTTTGGTTTTGGACAAGAA-TTTAAAATAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1974864 129 +   2316924 ---TGTTGCCTTTCACCAAACTATTAGATAG---AGGAGAAGCAGGAATTATGC----TTGTTTGTTTTTATTTGT-GGAAGTAGGATGGTATCCAGAAGGGGATGAAGCT--GTTTGGTTTTGGACAAGAA-TTTAAAATTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1855187 133 -   3067355 ---TGTTGCCTTTCACCAAACTATTAGATAG---AGGAGAAGCAGGAATTATGCTTGTTTGTTTGTTTTTATTTGT-GGAAGTAGGATGGTATCCAGAAGGGGACGAAGCT--GTTTGGTTTTGGACAATAA-TTTAAAATAC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            210068 137 -    375362 ---TGTTGCCTTTCACCAAACTATTAAGTATAGGAGGAGAAGCAGGAATTATGCTTATTTGTTTGTTTTTATTTGTGGAAAGCAGGAGGATATCCAGAAGAGGATGAAGCT--GTATGGTTTTGGACAAGAA-TTTAAAATAC
i saiBol1.JH378348         C 0 I 313
s cebCap1.NW_016108108v1      208734 137 -    373274 ---TGTTGTCTTTCACCAAACTATTAAGTATAGGAGGAGAAGCAAGAATTATGCTTATTTGTTTGTTTTTATTTGTGGGAAGTAGGATGGTATCCAGAAGAGGATGAAGCT--GTATGGTTTTGGGCAAGAA-TTTAAAATAC
i cebCap1.NW_016108108v1   C 0 I 314
s aotNan1.NW_018494050v1      147577 137 -    285216 ---TGTTGCCTTTCACCAAACTATTAAGTACAGGAGAAGAAGCAGGAATTATGCTTATTTGTTTGTTTTTATTTGTGGGAAGTAGGATGGTATCCAGAAGAGGATGAAGCT--GTATGGTTTTGGACAAGAA-TTTAAAATAC
i aotNan1.NW_018494050v1   C 0 I 319
s proCoq1.NW_012147953v1      936363 139 -   3516910 ---TGTTGCCTTTCACCAAGCTAGTAAGTAGAGGAGGAGGAGAGGAATTTATGCTTTTTTGGTTGTTTTTATTTGCAGGAAGTGGGATGGTATGCAgaaggggatgaaggtaagtttggttttggacaagaa-tttaaaatac
i proCoq1.NW_012147953v1   I 65 C 0
s otoGar3.GL873742           1519741 137 -   2232465 ---TATTGCTTTTCACTAAACTATTAAGAAGAGGAGTAAGAACAGGATTTTTGC-TTTGGGGAGGTATTTATCAGTAGCAAGTTGGATGGTATGCAGAA-GGGATGAAGATAAGTTTGATTTGGGATAAGAA-TTTAAAATAT
i otoGar3.GL873742         I 3 C 0
s canFam3.chr35             25872196 121 +  26524999 TGTCCTCATCTTTCCCCAAGCTAGTAAGCTG----GGAGCAGTAGCATTTCTGCTTATTTGTTTAT--------------GGTCAGGGGGGATCCAgaa---gatgaaaca-agtttggttttgaacaaggatttttagacac
i canFam3.chr35            C 0 C 0
e calJac3.chr4             171382722 897 - 171630274 I

a score=257587.000000
s hg38.chr6_GL000254v2_alt    143905 33 +   4827813 -TTA-AAGGCAACTTCATGGAAATGTCTGATAAAC
s panTro5.chr6              29125034 33 + 175400573 -TTA-AAGGCAACTTCATGGAAATGTCTGATAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29359379 33 + 173848474 -TTA-AAGGCAACTTCATGGAAATGTCTGATAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5159585 33 +   6154872 -TTA-AAGGCAACTTCATGGAAATGTCTGATAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74160837 33 + 122973662 -TTA-AAGGCAACTTCATGGTAATGTCTGATAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29336936 33 + 172585720 -TTA-AGGGCAACTTCATGGAAATGTCTGATAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28997540 33 - 170955103 -TTA-AGGGCAACTTCATGGAAATGTCTGATAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1974699 33 -   2996164 -TTA-AGGGCAACTTCATGGAAATGTCTGATAAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1846676 33 -   2157725 -TTA-AGGGCAACTTCATGGAAATGTCTGATAAAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28296979 33 -  71996105 -TTA-AGGGCAACTTCATGGAAATGTCTGATAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1974993 33 +   2316924 -TTA-AGGGCAACTTCATGGAAATGTCTGATAAAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1855320 33 -   3067355 -TTA-AGGGCAACTTCATGGAAATGTCTGATAAAC
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012147953v1      936502 34 -   3516910 -ttatgaaacagtctcatggaaatgtctgataaac
i proCoq1.NW_012147953v1   C 0 I 1268
s otoGar3.GL873742           1519878 34 -   2232465 -TCATGAGGCAGCCTGATGGAAATATCTGATAggg
i otoGar3.GL873742         C 0 I 1
s canFam3.chr35             25872317 34 +  26524999 gtat-gggacggcctcctggagatgtctgataagc
i canFam3.chr35            C 0 C 0
e saiBol1.JH378348            210205 313 -    375362 I
e aotNan1.NW_018494050v1      147714 319 -    285216 I
e cebCap1.NW_016108108v1      208871 314 -    373274 I
e calJac3.chr4             171382722 897 - 171630274 I

a score=28434.000000
s hg38.chr6_GL000254v2_alt    143938 5 +   4827813 ATGAT
s panTro5.chr6              29125067 5 + 175400573 ATGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29359412 5 + 173848474 ATGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5159618 5 +   6154872 ATGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74160870 5 + 122973662 Atgat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29336969 5 + 172585720 Atgat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28997573 5 - 170955103 Atgat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1974732 5 -   2996164 Atgat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1846709 5 -   2157725 Atgat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28297012 5 -  71996105 Atgat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1975026 5 +   2316924 Atgat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1855353 5 -   3067355 Atgac
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1519913 5 -   2232465 ggtac
i otoGar3.GL873742         I 1 C 0
s canFam3.chr35             25872351 5 +  26524999 actat
i canFam3.chr35            C 0 I 6664
e proCoq1.NW_012147953v1      936536 1268 -   3516910 I
e saiBol1.JH378348            210205 313 -    375362 I
e aotNan1.NW_018494050v1      147714 319 -    285216 I
e cebCap1.NW_016108108v1      208871 314 -    373274 I
e calJac3.chr4             171382722 897 - 171630274 I

a score=550615.000000
s hg38.chr6_GL000254v2_alt    143943 104 +   4827813 CTGTGgatcggcc--attgcactccagcc-------ttggtga---cagagcgagactccgtctcaaaaaaacaaacaaaaaaaTAAGTTGGTAAGGATATA-TTTTTTTGTCCATG
s panTro5.chr6              29125072 104 + 175400573 CTGTGgatcggcc--attgcactccagcc-------ttggtga---cagagcaagactccgtctcaaaaaaacaaacaaaaaaaTAAGTTGGTAAGGATATA-TTTTTTTGTCTATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29359417 104 + 173848474 CTGTGgatcggcc--attgcactccagcc-------ttggtga---cagagcaagactccgtctcaaaaaaacaaacaaaaaaaTAAGTTGGTAAGGATATA-TTTTTTTGTCTATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5159623 100 +   6154872 CTGTGgatcggcc--attgcactccagcc-------ttggtga---cagagcgagactccgtctcaaaaaaacaaacaaaaaa--aaGTTGGTAAGG--ATT-TTTTTTTGTCTATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74160875 104 + 122973662 ctgtggatcggcc--attgcactccagcc-------tgggtga---cagagcgagactctgtctcaaaaaaacaaacaaaaaaaTAAGTTGGTAAGGATATA-CTTTTTTCTCTATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29336974 102 + 172585720 ctgtggatcagcc--attgcactccagcc-------tgg--ga---cagagcgagactccatctgaaaaaaacaaacaaaaaaaTAAGTTGGTAAGGATGTA-TTTTTTTGTCTATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28997578 104 - 170955103 ctgtggatcagcc--attgcactccagcc-------tgggcga---cagagcgagactccatctgaaaaaaacaaacaaaaaaaTAAGTTGGTAAGGATGTA-TTTTTTTGTCTATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1974737 104 -   2996164 ctgtggatcagcc--attgcactccagcc-------tgggcga---cagagcgagactccgtctgaaaaaaacaaacaaaaaaaTAAGTTGGTAAGGATGTA-TTTTTTTGTCTATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1846714 104 -   2157725 ctgtggatcagcc--attgcactccagcc-------tgggcga---cagagcgagactccgtctgaaaaaaacaaacaaaaaaaTAAGTTGGTAAGGATGTA-TTTTTTTGTCTATG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28297017 100 -  71996105 ctgtggatcagcc--attgcactccagcc-------tgggcga---cagagcgagactctgtctgaaaa----aaacaaaaaaaTAAGTTGGTAAGGATGTA-TTTTTTTGTCTATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1975031  92 +   2316924 ctgtggatcagcc--attgcactccagcc-------tgggcga---cagagcgagactccgtctg------------aaaaaaaTAAGTTGGTAAGGATGTA-TTTTTTTGTCTATG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1855358 105 -   3067355 ctgtggatcagcc--attgcactccagcc-------tgggcga---cagagcgagactccgtttgaaaaaatcaaacaaaaaaaTAAGTTGGTAAGGATGTATTTTTTTTGTCTATG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1519918 109 -   2232465 ctgtggctcaaaagggtagggcaccagccccatatgctggtgggttcaaacccag-ccctggccaaaaaaaaaaaaGAAACGAAATGTCTGATAA------A-CATTATTATCCATG
i otoGar3.GL873742         C 0 I 2113
e proCoq1.NW_012147953v1      936536 1268 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I
e saiBol1.JH378348            210205 313 -    375362 I
e aotNan1.NW_018494050v1      147714 319 -    285216 I
e cebCap1.NW_016108108v1      208871 314 -    373274 I
e calJac3.chr4             171382722 897 - 171630274 I

a score=554561.000000
s hg38.chr6_GL000254v2_alt    144047 109 +   4827813 TTCTGTTTCAACTTATGTAGATTATTATAAATTGATGTAACCCACGTGAGAGGAAAATGTGAATATAAAAATGCAAAGCCCTAACATTTact--cacacacatacacacac
s panTro5.chr6              29125176 109 + 175400573 TTCTGTTTCAACTTATGTAGATTATTATAAATTGATGTAACCCACGTGAGAGGAAAATGTGAATATAAAAATGCAAAGCCCTAACATTTGCT--cacacacacacacatac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29359521 109 + 173848474 TTCTGTTTCAACTTATGTAGATTATTATAAATTGATGTAACCCACGTGAGAGGAAAATGTGAATTTAAAAATGCAAAGCCCTAACATTTGCT--cacacacacacacacac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5159723 111 +   6154872 TTCTGTTTCAACTTATGTAGATTATTATAAATTGATGTAACCCACGTGAGAGGAAAATGTGAATATAAAAATGCAAAGCCCTAACATTTGCTcacacacacacacacacac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74160979 105 + 122973662 TTCTGTTTCAACTTATGTAGATTATTATAAATTGATGTAAACCATGTGAGAGGAAAATGTGAATATAAAAATGCAAAGCCCTAACATTTGCT--cacacacacacac----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29337076  99 + 172585720 TTCTGTTTCAACTTATGTAGATTATTGTAAATTGATGTAAACCACGTGAGAGGAAAATGTGAATATAAAAATGCAAAGCCCTAACATTTGCT--CACACAC----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28997682  99 - 170955103 TTCTGTTTCAACTTATGTAGATTATTGTAAATTGATGTAAACCACGTGAGAGGAAAATGTGAATATAAAAATGCAAAGCCCTAACATTTGCT--CACACAC----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1974841 101 -   2996164 TTCTGTTTCAACTTATGTAGATTATTGTAAATTGATGTAAACCACGTGAGAGGAAAATGTGAATATAAAAATGCAAAGCCCTAACATTTGCTCACACACAC----------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1846818  99 -   2157725 TTCTGTTTCAACTTATGTAGATTATTGTAAATTGATGTAAACCACGTGAGAGGAAAATGTGAATATAAAAATGCAAAGCCCTAACATTTGCT--CACACAC----------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28297117  99 -  71996105 TTCTGTTTCAACTTATGTAGATTATTGTAAATTGATGTAAACCACGTGAGAGGAAAATGTGAATATAAAAATGCAAAACCCTAACATTTGCT--CTCACAC----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1975123  99 +   2316924 TTCTGTTTCAACTTATGTAGATTATTGTAAATGGATGTAAACCACGTGAGAGGAAAATGTGAATATAAAAATGCAAAGCCCTAACATTTGCT--CACACAC----------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1855463  97 -   3067355 TTCTGTTTCAACTTATGTAGATTATTGTAAATTGATGTAAACCACATGAGAGGAAAATGTGAATATAAAAATGCAAAGCCCTAGCATTTGCT----CACAC----------
i colAng1.NW_012115566v1   C 0 C 0
e proCoq1.NW_012147953v1      936536 1268 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I
e saiBol1.JH378348            210205 313 -    375362 I
e otoGar3.GL873742           1520027 2113 -   2232465 I
e aotNan1.NW_018494050v1      147714 319 -    285216 I
e cebCap1.NW_016108108v1      208871 314 -    373274 I
e calJac3.chr4             171382722 897 - 171630274 I

a score=40572.000000
s hg38.chr6_GL000254v2_alt    144156 6 +   4827813 atacac
s panTro5.chr6              29125285 6 + 175400573 atacac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29359630 6 + 173848474 atacac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5159834 6 +   6154872 atacac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74161084 4 + 122973662 --acac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29337175 4 + 172585720 --ACAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28997781 4 - 170955103 --ACAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1974942 4 -   2996164 --ACAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1846917 4 -   2157725 --ACAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28297216 4 -  71996105 --ACAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1975222 4 +   2316924 --ACAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1855560 4 -   3067355 --ACAC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            210518 6 -    375362 ATACAC
i saiBol1.JH378348         I 313 C 0
s cebCap1.NW_016108108v1      209185 6 -    373274 ATACAC
i cebCap1.NW_016108108v1   I 314 C 0
s aotNan1.NW_018494050v1      148033 6 -    285216 ATACAC
i aotNan1.NW_018494050v1   I 319 C 0
e proCoq1.NW_012147953v1      936536 1268 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I
e otoGar3.GL873742           1520027 2113 -   2232465 I
e calJac3.chr4             171382722 897 - 171630274 I

a score=385689.000000
s hg38.chr6_GL000254v2_alt    144162 43 +   4827813 aAATCTTCTGAAATTTCATTATTTTCCCCTTTTCTCCCATTAA
s panTro5.chr6              29125291 43 + 175400573 aAATCTTCTGAAATTTCATTATTTTCCCCTTTTCTCCCATTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29359636 43 + 173848474 aAATCTTCTGAAATTTCATTATTTTCCCCTTTTCTCCCATTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5159840 43 +   6154872 aAATCTTCTGAAATTTCATTATTTTCCCCTTTTCTCCTTTTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74161088 43 + 122973662 aAATCTTCTGAAATTTCATTATTTTCCCCTTTTCTCCCTTTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29337179 43 + 172585720 AAATCTTCTGAAATTTCATTATTTTCCCCTTTTCTCCCTTTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28997785 43 - 170955103 AAATCTTCTGAAATTTCATTATTTTCCCCTTTTCTCCCTTTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1974946 43 -   2996164 AAATCTTCTGAAATTTCATTATTTTCCCCTTTTCTCCCTTTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1846921 43 -   2157725 AAATCTTCTGAAATTTCATTATTTTCCCCTTTTCTCCCTTTAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28297220 43 -  71996105 AAATCTTCTGAAATTTCATTATTTTCCCCTTTTCTCCCTTTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1975226 43 +   2316924 AAATCTTCTGAAATTTCATTATTTTCCCCTTTTCTCCCTTTAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1855564 43 -   3067355 AAATCTTCTGAAATTTCATTATTTTTCCCTTTTCTCCCTTTAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            210524 43 -    375362 CAATCTTCTGAAATTTCATTATTTTCATTTTTTTCCCCTTTAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      209191 40 -    373274 CAATCTTCTGAAATTTCATTATTTTCATTTTTT---CCTTTAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      148039 42 -    285216 CAATCTTCTGAAATTTCATTATTTTCATTTTTTTC-CCTTTAA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1522140 34 -   2232465 AAGTCTTCTGGAATTCCATTCTCTTCC---------CTTTTAA
i otoGar3.GL873742         I 2113 C 0
e proCoq1.NW_012147953v1      936536 1268 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I
e calJac3.chr4             171382722 897 - 171630274 I

a score=111984.000000
s hg38.chr6_GL000254v2_alt    144205 9 +   4827813 AGACAGACC
s panTro5.chr6              29125334 9 + 175400573 AGACAGACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29359679 9 + 173848474 AGACAGACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5159883 9 +   6154872 AGACAGACC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74161131 9 + 122973662 AGACAAACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29337222 9 + 172585720 AGACAGACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28997828 9 - 170955103 AGACAGACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1974989 9 -   2996164 AGACAGACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1846964 9 -   2157725 AGACAGACC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28297263 9 -  71996105 AGACAGACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1975269 9 +   2316924 AGACAGACC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1855607 9 -   3067355 AGACAGACC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            210567 9 -    375362 AGACAGACC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      209231 9 -    373274 AGACAGACC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      148081 9 -    285216 AGACAGACC
i aotNan1.NW_018494050v1   C 0 I 2
s proCoq1.NW_012147953v1      937804 9 -   3516910 AGACAGACC
i proCoq1.NW_012147953v1   I 1268 C 0
s otoGar3.GL873742           1522174 9 -   2232465 AGACTGACC
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25872356 6664 +  26524999 I
e calJac3.chr4             171382722 897 - 171630274 I

a score=692216.000000
s hg38.chr6_GL000254v2_alt    144214 70 +   4827813 TA--TTATTATCTAGGGACAGTGAAAATGAGAAAAGGAGAATAAAAGGGAACAAAATGGAAGAGAGGAAGCT
s panTro5.chr6              29125343 70 + 175400573 TA--TTATTATCTAGGGACAGTGAAAATGAGAAAAGGAGAATAAAAGGGAACAAAATGGAAGAGAGGAAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29359688 70 + 173848474 TA--TTATTATCTAGGGACAGTGAAAATGAGAAAAGGAGAATAAAAGGGAACAAAATGGAAGAGAGGAAGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5159892 70 +   6154872 TA--TTATTATCTAGGGACAGTGAAAATGAGAAAAGGAGAATAAAAGGGAAGAAAATGGAAGAGAGGAAGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74161140 70 + 122973662 TA--TTATTATCTAGGGACAGTGAAAATGAGAAAGGGAGAATAAAAGGGAACAAAATGCAAGAGAGGAAGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29337231 70 + 172585720 TA--TTATTATCTAGGGACAGTGAAAATGAGAAAAGGAGAATAAAAGGGAACAAAATGCAAGAAAGGAAGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28997837 70 - 170955103 TA--TTATTATCTAGGGACAGTGAAAATGAGAAAAGGAGAATAAAAGGGAACAAAATGCAAGAAAGGAAGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1974998 70 -   2996164 TA--TTATTATCTAGGGACAGTGAAAATGAGAAAAGGAGAATAAAAGGGAACAAAATGCAAGAAAGGAAGCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1846973 70 -   2157725 TA--TTATTATCTAGGGACAGTGAAAATGAGAAAAGGAGAATAAAAGGGAACAAAATGCAAGAAAGGAAGCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28297272 70 -  71996105 TA--TTATTATCTAGGGACAGTGAAAATGAGAAAAGGAGAATAAAAGGGAACAAAATGCAAGAAAGGAAGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1975278 70 +   2316924 TA--TTATTATCTAGGGACAGTGAAAATGAGAAAAGGAGAATAAAAGGGAACAAAATGCAAGAAAGGAAGCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1855616 70 -   3067355 TA--TTATTATCTAGGGACAGTGAAAATGAAAAAAGGAGAATAAAAGGGAACAAAATGCAAGAAAGGAAGCT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            210576 72 -    375362 TATTTTATTATCTAGGGATGGTGAAAGTGAGAAAAGAAGAATAAAAGAAAAAAAAGTGCAAGAGAGGAAACT
i saiBol1.JH378348         C 0 I 293
s cebCap1.NW_016108108v1      209240 70 -    373274 TA--TTGTTATCTAGGGACGGTGAAAATGAGAAAAGGAGAATAAAAGAGAACAAAATGCAAGAGAGGAAACT
i cebCap1.NW_016108108v1   C 0 C 0
s proCoq1.NW_012147953v1      937813 70 -   3516910 TG--TTATTATCTAGGGACAGTAAAAATGAGAAAAGTGAAATAAAAGAGAACAGAATGCAAGAGAGGAAACT
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1522183 70 -   2232465 TA--ATATTATATAGGGACAGTAAAAATGAGAAAAAGGGAGTAAAAGAGAACAAAATGTAAAGGAGGAAACT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25872356 6664 +  26524999 I
e aotNan1.NW_018494050v1      148090  2 -    285216 I
e calJac3.chr4             171382722 897 - 171630274 I

a score=167342.000000
s hg38.chr6_GL000254v2_alt    144284 20 +   4827813 AAGCACATATTTCTGGGTAT
s panTro5.chr6              29125413 20 + 175400573 AAGCACATATTTCTGGGAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29359758 20 + 173848474 AAGCACATATTTCTGGGTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5159962 20 +   6154872 AAGCACATATTTCTGGGTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74161210 20 + 122973662 AAGCACATATTTCTGGGTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29337301 20 + 172585720 AAGCACATATTTCTGGATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28997907 20 - 170955103 AAGCACATATTTCTGGATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1975068 20 -   2996164 AAGCACATATTTCTGGATAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1847043 20 -   2157725 AAGCACATATTTCTGGATAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28297342 20 -  71996105 AAGCACATAATTCTGGATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1975348 20 +   2316924 AAGCACATATTTCTGGATAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1855686 20 -   3067355 AAGCACATATTTCTGGGTAT
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      209310 20 -    373274 AAGCGCCTATTTCTGAGTAT
i cebCap1.NW_016108108v1   C 0 C 0
s proCoq1.NW_012147953v1      937883 20 -   3516910 AAGCACATATTTCTGGATCT
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1522253 20 -   2232465 AAGCACATATTGTGGGGTAT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25872356 6664 +  26524999 I
e saiBol1.JH378348            210648 293 -    375362 I
e aotNan1.NW_018494050v1      148090  2 -    285216 I
e calJac3.chr4             171382722 897 - 171630274 I

a score=1615143.000000
s hg38.chr6_GL000254v2_alt    144304 172 +   4827813 ATTTTGCAGAAGACACAGGATGCAAAGTACAAGTGGAAGAGAAAGTGGGGATGGAGCCAAAGTTGAGACAAAAAAGGGGGCAGAAATAAAAGAAGG-AAAATGGAGCCAGTCAGAAATTGCCCTTCTCTGAGCAGAAGAAACTGTAGAGAATAGTTCTGAATGATAACCAGGT
s panTro5.chr6              29125433 172 + 175400573 ATTTTGCAGAAGACACAGGATGCAAAGTACAAGTGGAAGAGAAAGTGGGGATGGAGCCAAAGTTGAGACAAAAAAGGGGGCAGAAATAAAAGAAGG-AAAATGGAGCCAGTCAGAAATTGCCCTTCTCTGAGCAGAAGAAACTGTAGAGAATAGTTCTGAATGATAACCAGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29359778 172 + 173848474 ATTTTGCAGAAGACACAGGATGCAAAGTACAAGTGGAAGAGAAAGTGGGGATGGAGCCAAAGTTGAGACAAAAAAGGGGGCAGAAATAAAAGAAGG-AAAATGGAGCCAGTCAGAAATTGCCCTTCTCTGAGCAGAAGAAACTGTAGAGAATAGTTCTGAATGATAACCAGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5159982 172 +   6154872 ATTTTGCAGAAGACACAGGATGCAAAGTACAAGTGGAAGAGAAAGTGGGGATGGAGCCAAAGTTGAGACAAAAAAGGGGGCAGAAATAAAAGAAGG-AAAATGGAGCCAGTCAGAAATTGCCCTTCTCTGAGCAGAAGAAACTGTAGAGAATAGTTCTGAATGATAACCAGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74161230 172 + 122973662 ATTTTGCAGAAGACACAGGATGCAAAGTACAAGTGGAAGAGAAAGTGGGGATGGAGCCAAAGTTGAGACAAAAAAGGGGGCAGAAATAAAAGAAGG-AAAATGGAGCCAGTCAGAAATTGCCCTTCTCTGAGCAGAAGAAACTGTAGAGAATAGTTCTGAATGATAACCAGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29337321 171 + 172585720 ATTTT-CAGAAGACACAGGATGCAAAGTACAAATGGAAAAGAAAGTGGGGATGGAGCCAAAGTTGAGACAATAAAGGGGGCAGAAATAAAAGAAGG-AAAATGGAGCCAGTCAGAAATTGCCCTTCTCTGAGCAGAAGAAACTGTAGAGAGTAGTTCTGAATGATAACCAGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28997927 171 - 170955103 ATTTT-CAGAAGACACAGGATGCAAAGTACAAATGGAAAAGAAAGTGGGGATGGAGCCAAAGTTGAGACAATAAAGGGGGCAGAAATAAAAGAAGG-AAAATGGAGCCAGTCAGAAATTGCCCTTCTCTGAGCAGAAGAAACTGTAGAGAGTAGTTCTGAATGATAACCAGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1975088 171 -   2996164 ATTTT-CAGAAGACACAGGATGCAAAGTACAAATGGAAAAGAAAGTGGGGATGGAGCCAAAGTTGAGACAATAAAGGGGGCAGAAATAAAAGAAGG-AAAATGGAGCCAGTCAGAAATTGCCCTTCTCTGAGCAGAAGAAACTGTAGAGAGTAGTTCTGAATGATAACCAGGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1847063 171 -   2157725 ATTTT-CAGAAGACACAGGATGCAAAGTTCAAATGGAAAAGAAAGTGGGGATGGAGCCAAAGTTGAGACAATAAAGGGGGCAGAAATAAAAGAAGG-AAAATGGAGCCAGTCAGAAATTGCCCTTCTCTGAGCAGAAGAAACTGTAGAGAGTAGTTCTGAATGATAACCAGGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28297362 171 -  71996105 ATTTT-CAGAAGACACAGGATGCAAAGTACAAGTGGAAAAGAAAGTGGGGATGGAGCCAAAGTTGAGACAATAAAGGGGGCAGAAATAAAAGAAGG-AAAATGGAGCCAGTCAGAAATTGCCCTTCTCTGAGCAGAAGAAACTGTAGAGAGTAGTTCTGAATGATAACTAGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1975368 171 +   2316924 ATTTT-CAGAAGACACAGGATGCAAAGTACAAATGGAAAAGAAAGTGGGGATGGAGCCAAAGTTGAGACAATAAAGGGGGCAGAAATAAAAGAAGG-AAAATGGAGCCAGTCAGAAATTGCCCTTCTCTGAGCAGAAGAAACTGTAGAGAGTAGTTCTGAATGATAACCAGGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1855706 172 -   3067355 ATTTT-CCGAAGACACAGGATGCAAAGTACAAGTGGAAAAGAAAGTGGGGATGGAGCCAAAGTTGAGACAATAAAGGGGGCAGAAATAAAAGAAGGAAAAATGGAGCCAGTCAGAAATTGCCCTTCTCTGAGCAGAAGAAACTGTAGAGAGTAGTTCTGAATGATAACCAGGT
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      209330 171 -    373274 ATTTTGCAGAAGACACAGGATCAAAAGTACACGTGGAAAAGAGAGTGGGGATGGAGCCAAAGTTGAGATAAAAAAGGGGACAGAAATAAC-GAAGG-AAAATGGAGCCAGTCAGAAATTGCCCTTCTCGATGCAGAAGAAACTGTAGAGAATAGTTCTGAATGATAGCCCAGT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      148092 170 -    285216 ATTCTGCAGAAGACACAGGGTCCAAAGCACAAGTGGAAA--AGAGTGGGGATGGAGCCAAAGTTGGGACAAAAAAGGGGGCAGAAATAACAGAAGG-AAAATGGAGCCAGTCAGAAATTGCCCTTCTCGAAGCAGAGGAAACTGTAGAGAATAGTTCTGAATGACAGCCCGGT
i aotNan1.NW_018494050v1   I 2 C 0
s proCoq1.NW_012147953v1      937903 172 -   3516910 ATTTTGCAGTGAACACAGGGTGTAAAGTATATGTGGAAAAGACAATGGGACTGAAGCCAAAGTCAACACAGAAAAGGGGGCAGAAATAAGGGGAGG-AAAATTGACCGAATTAGGAATTGCCCTTCTCTGAGCAGAAGAAAGTGTAGAAGATAGTTTTGGATGATAACCAGGT
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1522273 160 -   2232465 GTTTTGCAGAGGTCACAGGATGTAATGTTTAAGTGGAAAAGAGAATGGGTACGAACCCAAAGT------AAAAAATGGGGTAGCAGTAAGGGAAGG-AAAATGAGTCCCGTTAGGACTTGCCCTTCTCTGAGCAGAAGAAAGT---GAGGATAGTTTTA---GACAACTAGGT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25872356 6664 +  26524999 I
e saiBol1.JH378348            210648 293 -    375362 I
e calJac3.chr4             171382722 897 - 171630274 I

a score=1308217.000000
s hg38.chr6_GL000254v2_alt    144476 129 +   4827813 AAAGGAGATCAGAAATAGAGTGGGAAGCAGGTTAGGAGGCTTAACATTTTCAGGTTAGCAAGGTGAGATTTAAAAGGAGAGG--------AAAAAACATCTCCATGAACTCTCAGTACTTATTTTTATTTTAGAATT
s panTro5.chr6              29125605 129 + 175400573 AAAGGAGATCAGAAATAGAGTGGGAAGCAGGTTAGGAGGCTTAACATTTTCAGGTTAGCAAGGTGAGATTTAAAAGGAGAGG--------AAAAAACATCTCCATGAACTCTCAGTACTTATTTTTATTTTAGAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29359950 129 + 173848474 AAAGGAGATCAGAAATAGAGTGGGAAGCAGGTTAGGAGGCTTAACATTTTCAGGTTAGCAAGGTGAGATTTAAAAGGAGAGG--------AAAAAACATCTCCATGAACTCTCAGTACTTATTTTTATTTTAGAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5160154 129 +   6154872 AAAGGAGATCAGAAATAGAGTGGGAAGCAGGTTAGGAGGCTTAACATTTTCAGGTTAGCAAGGTGAGATTTAAAAGGAGAGG--------AAAAAACATCTCCATGAACTCTCAGTTCTTATTTTTATTTTAGAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74161402 129 + 122973662 AAAGGAGATCAGAAATAGAGTGGGAAGCAGGTTAGGAGGCTTAGCATTTTCAGGTTAGCAAGGTGAGATTTAAAAGGAGAGG--------AAAAAACATCTCCATGAACTCTCAGTTCTTATTTTTATTTTAGAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29337492 129 + 172585720 AAAGGAGAGCAGAAATAGAGTGGGATGCAGGTGAGGAGGCTTAACATTTTCAGGTTAGCAAGGTAAGATTTAAAAGGAGAGG--------AAAAAAAATCTCCATGAACTCTCAGTTCTTATTTTTATTTTAGAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28998098 129 - 170955103 AAAGGAGAGCAGAAATAGAGTGGGATGCAGGTTAGGAGGCTTAACATTTTCAGGTTAGCAAGGTAAGATTTAAAAGGAGAGG--------AAAAAAAATCTCCATGAACTCTCAGTTCTTATTTTTATTTTAGAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1975259 129 -   2996164 AAAGGAGAGCAGAAATAGAGTGGGATGCAGGTTAGGAGGCTTAACATTTTCAGGTTAGCAAGGTAAGATTTAAAAGGAGAGG--------AAAAAAAATCTCCATGAACTCTCAGTTCTTATTTTTATTTTAGAATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1847234 129 -   2157725 AAAGGAGAGCAGAAATAGAGTGGGATGCAGGTTAGGAGGCTTAACATTTTCAGGTTAGCAAGGTAAGATTTAAAAGGAGAGG--------AAAAAAAATCTCCATGAACTCTCAGTTCTTATTTTTATTTTAGAATT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28297533 129 -  71996105 AAAGAAGAGCAGAAATAGAGTGGGATGCAGGTTAGGAGGCTTAACATTTTCAGGTTAGCAAGGTGAGATTTAAAAGGAGAGG--------AAAAAAAATCTCCATGAACTCTCAGTTCTTATTTTTATTTTAGAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1975539 130 +   2316924 AAAGGAGAGCAGAAATAGAGTGGGATGCAGATTAGGAGGCTTAACATTTTCAGGTTAGCAAGGTAAGATTTAAAAGGAGAGGA-------AAAAAAAATCTCCATGAACTCTCAGTTCTTATTTTTATTTTAGAATT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1855878 129 -   3067355 AAAGGAGATCAGAAATAGAGTGGGATGCAGGTTAGGAGGCTTAACATTTTCAGGTTAGCAAGGTGAGATTTAAAAGGAGAGG--------AAAAAAAATCTCCATGAACTCTCAGTTCTTATTTTTATTTTAGAATT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            210941 136 -    375362 aaaaaaaaaaagaaaCAGAGTGGGAAGCAGGTTAGGAGGCTTAGCATTTTCAGCTTAGCAAGGTGAGATTTAAAAGGAGAGAGAGAGAA-AAAAAAAATCTCCACAAACTCTCAGTCCTTATTTTTATTTTAGAATT
i saiBol1.JH378348         I 293 C 0
s cebCap1.NW_016108108v1      209501 137 -    373274 GAAGGAGATCAGAAACAGAGTGGGAAGCAGGCTAGGAGGCTTACCATTTTCAGTTTAGCAAAGAGAGATTTAAAAGGAGAGAGAGAAAATAAAAACAAATCCCACGAACTCTCAGTCCTTATTTTTATTTTAGAATT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      148262 133 -    285216 -AAAAGAGACAGAAATAGAGTGAGAAGCAGGTTAGGAGGCTTAGCATTTTCAGCTTAGCAAGGTGAGATTTAAAAGGAGAGAGAGAAAA-AAAACAAATCTCCACAAA--CTAAGTCCTTATTTTTATTTTAGAATT
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      938075 122 -   3516910 AAAGGAAGTCAGAAATAGAGTGGCA-GCAAGTTAGGAGGCTTAACATTCTCAGGTTAATAAGATGGCATAAAAAAGGAGAGA--------AAAAA--ATTTCAATGAACTC----TCATTCTTTTTGTTTCAAAATT
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1522433 127 -   2232465 AAAGGAAGTCAGAAACTGAGTGGGAGGCAAATTAGGAGGCTTAGCATTCTCAGGTTAACAAGAAGACATAAATGAGGAAAGA--------AAAAA--ATCTCAATGAACTCTTAGTCATTCTTTTTGTTTTGAAATT
i otoGar3.GL873742         C 0 I 155
e canFam3.chr35             25872356 6664 +  26524999 I
e calJac3.chr4             171382722 897 - 171630274 I

a score=230127.000000
s hg38.chr6_GL000254v2_alt    144605 23 +   4827813 AGAACCCTGTGAGAAAGCTGACA
s panTro5.chr6              29125734 23 + 175400573 AGAACCCTGTGAGAAAGCTGACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29360079 23 + 173848474 AGAACCCTGTGAGAAAGCTGACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5160283 23 +   6154872 AGAACCCTGTGAGAAAGCTGACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74161531 23 + 122973662 AGAGCCCTGTGAGAAAGCTGACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29337621 23 + 172585720 TAAGCCCTATGAGAAAGATGACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28998227 23 - 170955103 TAAGCCCTATGAGAAAGATGACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1975388 23 -   2996164 TAAGCCCTATGAGAAAGATGACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1847363 23 -   2157725 TAAGCCCTATGAGAAAGATGACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28297662 23 -  71996105 AAAGCCCTATGAGAAAGATGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1975669 23 +   2316924 TAAGCCCTATGAGAAAGATGACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1856007 23 -   3067355 AAAGCCCTATGAGAAAGATGACA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            211077 23 -    375362 AGAGCCCTATAAGAAAGCTGACA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      209638 23 -    373274 AGAGCCCTATGAGAAAGCTGACA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      148395 23 -    285216 AGAGCCCCATGAGAAAGCTGACA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      938197 23 -   3516910 AGAGCCCCATGAGAAAGCTGACA
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1522715 23 -   2232465 aGAGCCCTATGAGCAAGCTAATA
i otoGar3.GL873742         I 155 C 0
e canFam3.chr35             25872356 6664 +  26524999 I
e calJac3.chr4             171382722 897 - 171630274 I

a score=243933.000000
s hg38.chr6_GL000254v2_alt    144628 21 +   4827813 ATTGTATTTTAGCTCACAAAG
s panTro5.chr6              29125757 21 + 175400573 ATTGTATTTTAGCTCACAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29360102 21 + 173848474 ATTGTATTTTAGCTCACAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5160306 21 +   6154872 ATTGTATTTTAGCTCACAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74161554 21 + 122973662 ATTGTATTTTAGCTCACAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29337644 21 + 172585720 ATTGTAGTTTAGCTCACAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28998250 21 - 170955103 ATTGTAGTTTAGCTCACAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1975411 21 -   2996164 ATTGTAGTTTAGCTCACAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1847386 21 -   2157725 ATTGTAGTTTAGCTCACAAAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28297685 21 -  71996105 ATTGTATTTTAGCTCACAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1975692 21 +   2316924 ATTGTAGTTTAGCTCACAAAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1856030 21 -   3067355 ATTGTATTTTAGGTCACAAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171383619 21 - 171630274 ATTTTATTTTAAGTCACAGAG
i calJac3.chr4             I 897 C 0
s saiBol1.JH378348            211100 21 -    375362 ATTGTGTTTTAACTCACAAAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      209661 21 -    373274 ATTCTATTTTAACTCACAAAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      148418 21 -    285216 ATTGTATTTTAACTCACAAAG
i aotNan1.NW_018494050v1   C 0 I 314
s proCoq1.NW_012147953v1      938220 21 -   3516910 ATTGAATTTTAACTTACAAAA
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1522738 21 -   2232465 ATTGGAATTTAACTTACAAAG
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             25872356 6664 +  26524999 I

a score=2001224.000000
s hg38.chr6_GL000254v2_alt    144649 180 +   4827813 ATCTCAAACCCTAATATTGTCACTATCCAGGATCTAAACCTTTTAGCTCTCTTGTGGCCTCTCTGGAGGAAGGATTAGGACCATGAATCATGGTATCATCCACATCTGTCCTTGGGCAGTTCTAGAAGATGTCCTAAGCCCCAGGTGACCTGATTCCAATTCATTAAAAAGGTGAGCCAC
s panTro5.chr6              29125778 180 + 175400573 ATCTCAAACCCTAATATTGTCACTATCCAGGATCTAAACCTTTTAGCTCTGTTGTGGCCTCTCTGGAGGAAGGATTAGGACCATGAATCATGGTATCATCCACATCTGTCCTTGGGCAGTTCTAGAAGATGTCCTAAGCCCCAGGTGACCTGATTCCAATTCATTAAAAGGGTGAGCCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29360123 180 + 173848474 ATCTCAAACCCTAATATTGTCACTATCCAGGATCTAAACCTTTTAGCTCTGTTGTGGCCTCTCTGGAGGAAGGATTAGGACCATGAATCATGGTATCATCCACATCTGTCCTTGGGCAGTTCTAGAAGATGTCCTAAGCCCCAGGTGACCTGATTCCAATTCATTAAAAAGGTGAGCCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5160327 180 +   6154872 ATCTCAAACCCTAATATTGTCACTATCCAGGATCTAAACCTTTTAGCTCTTTTGTGGCCTCTCTGGAGGAAGGATTAGGACCATGAATCATGGTATCATCCACATCTGTCCTTGGGCAGTTCTGGAAGATGTCCTAAGCCCCAGGTGACCTGATTCCAATTCATTAAAAAGGTGAGCCAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74161575 180 + 122973662 ATCTCAAACCCTAATATTGTCACTATCCAGGATCTAAACTTTTTAGCTCTGTTGTGGCCTCTGTGGAGGAAGGATTAGGACCATGAATCATGGTATCATTCACATCTGTCCTTGGGCAGTTCCGGAAGATGTCCTAAGCCCCAGGTGACCTGATTCCAATTCATTAAAAAGGTGAGCCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29337665 161 + 172585720 ATCTCAAACCCTAGTATTGTCACTATCCAGGATCTAAATCTTTTAGCTCTGTTGTGGCCTCT-------------------GATGAATCATGGTATCAGCCATAGCTGTTCTTGGGCAGTTCCAGAAGATGTCCTAAGCCCCAGGTGACCTGATTCCAATTCATTAAAAAGGTGAGTCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28998271 161 - 170955103 ATCTCAAACCCTAATATTGTCACTATCCAGGATCTAAATCTTTTAGCTCTGTTGTGGCCTCT-------------------CGTGAATCATGGTATCAGCCATAGCTGTTCTTGGGCAGTTCCAGAAGATGTCCTAAGCCCCAGGTGACCTGATTCCAATTCATTAAAAAGGTGAGTCAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1975432 161 -   2996164 ATCTCAAACCCTAATATTGTCACTATCCAGGATCTAAATCTTTTAGCTCTGTTGTGGCCTCT-------------------CGTGAATCATGGTATCAGCCATAGCTGTCCTTGGGCAGTTCCAGAAGATGTCCTAAGCCCCAGGTGACCTGATTCCAATTCATTAAAAAGGTGAGTCAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1847407 180 -   2157725 ATCTCAAACCCTAATATTGTCACTATCCAGGATCTAAATCTTTTAGCTCTGTTGTGGCCTCTCTGGAGGAAGGATTAGGACCGTGAATCATGGTATCAGCCATAGCTGTCCTTGGGCAGTTCCAGAAGATGTCCTAAGCCCCAGGTGACCTGATTCCAATTCATTAAAAAGGTGAGTCAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28297706 180 -  71996105 ATCTCAAACCCTAATATTGTGACTATCCAGGATCTAAATCTTTTAGCTCTGTTGTGGCCTCTCTGGAGGAAGGATTAGGACCGTGAATCATGGTATCAGCCACAGCTGTCCTTGGGCAGCTCCAGAGGATGTCCTAAGCCCCAAGTGACCTGATTCCAATTCATTAAAAAGGTGAGTCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1975713 180 +   2316924 ATCTCAAACCCTAATATTGTCACTATCCAGGATCTAAATCTTTTAGCTCTGTTGTGGCCTCTCTGGAGGAAGGATTAGGACCGTGAATCATGGTATCAGCCATAGCTGTCCTTGGGCAGTTCCAGAAGATGTCCTAAGCCCCAGGTGACCTGATTCCAATTCATTAAAAAGGTGAGTCAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1856051 180 -   3067355 ATCTCAAACCCTAATATTGTCACTATCCAGGATCTAAATCTTTTAGCTCTGTTGTGGCCTCTCTGGAGGAAGGATTAGGACCGTGAATCATGGTATCAGCCATAGCTGTCCTTGGGCAGTTCCAGAAGATGTCCTAAGCCCTAGGAGACCTGATTCCAATTCAATAAAAACGTGAGCCAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171383640 179 - 171630274 ATCTCAAACCGTAATGTCGTCACTATCCAGGATCTAAACCTTTGAGCTCT-CTGCGGCCTCTCTGGAGGCAGGATTAGGACCATGAGTCATGGTATCGGCCACATCTGTCCTTGTGCAGTTTCAGAAGAGGTCCCAAGTCCCAGGTGACCTTATTCCCATTCATTAAAAAGGTGAGCCGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            211121 179 -    375362 ATCTCAAACCCTAATGTTGTCACTATCCAGGATCTAAACCTTTGAGCTCT-TTGTGGCCTCTCTGGAGGAAGGATTAGGACCATGAGTCATGGTATTGGCCACATCTGTCCTTGTGCAGTTTCAGAAGAGGTCCCAAGTCCCAGGTGACCTTATTCCCATTCATTAAAAAGGTGAGCCAC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      209682 179 -    373274 ATCTCAAACCCTAATGTTGTCACTATCCAGCATCTAAACCTTTGAGCTCT-CTGTGGCCTCTCTGGAGGAAGGATTAGGGCCATGAGTCATGGTATCGGCCACATCTGTCCTTGTGCAGTTTCAGAAGAGGTCCCAAGTCCCAGGTGACCTTATTCCCATTCATTAAAAAGGTGAGCCGC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      148753 179 -    285216 ATCTCAAACCCTAATGTTGTCACTATGCAGGATCTAAACCTTTGAGCTCT-CTGTGGCCTCTCTGGAGGAAGGATTAGGACCATGAGGCACGGTGTCGGCCACATCTGTCCTTGTGCAGTTTCAGAAGAGGTCCCAAGTCCCAGGTGACCTTATTCCCATTCATTAAAAAGCTGAGCTGC
i aotNan1.NW_018494050v1   I 314 C 0
s proCoq1.NW_012147953v1      938241 173 -   3516910 ATCTCAGATCCTAATATTATCACTGTTCAGGATCTAAACCTCTTAGCTCTGCTCTGGCCCCTTTGGAGGAAGGATTAGGACTATGAATCATAGTATCAGTCACAACTGTCCTTCCGCAGTCCAAGAGGGTGACCCAAACCCCAGGTGA-------CCAATTCATTAAAAAGATGAGCTAC
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1522759 166 -   2232465 ATCTCAAATCCTAATATTATCACTATTCAGGATCTAAACCTTTTAGTTTTTCTCTGGCCTCTCTGGAAGAATGATTA--------------AGTATTAGTCACAACTGTCTTTCTGCAATCTAAAAGGGTTCCCCAAACCCCAGGTGACCTGATTCCAATTAATTAAAAAGATGAGCttt
i otoGar3.GL873742         C 0 I 295
e canFam3.chr35             25872356 6664 +  26524999 I

a score=2118445.000000
s hg38.chr6_GL000254v2_alt    144829 180 +   4827813 ATATATTCTTTCAACAGTAAGTG--TCCCAATGCTGATGATGAAGATGAGAAAATATCTTCCAGTAGCTTAA-CTTTTTTTCAGTTTCAATACTTTCAATATATCCAGTTTCAATAGTTGCATATAACTTCAAATATTTGGCTTTAATTGAAAATGTTCACCAAACTTTGAAAATGGGGAGAG
s panTro5.chr6              29125958 180 + 175400573 ATATATTCTTTCAACAGTAAGTG--TCCCAATGCTGATGATGAAGATGAGAAAATATCTTCCAGTAGCTTAA-TTTTTTTTCAGTTTAAATACTTTCAATATATCCAGTTTCAATAGTTGCATATAACTTCAAATATTTGGCTTTAATTGAAAATGTTCACCAAACTTTGAAAATGGGGAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29360303 180 + 173848474 ATATATTCTTTCAACAGTAAGTG--TCCCAATGCTGATGATGAAGATGAGAAAATATCTTCCAGTAGCTTAA-TTTTTTTTCAGTTTAAATACTTTCAGTATATCCAGTTTCAATAGTTGCATATAACTTCAAATATTTGGCTTTAATTGAAAATGTTCACCAAACTTTGAAAATGGGGAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5160507 180 +   6154872 ATATATTCTTTCAACAGTAAGTG--TCCCAATGCTGATGATGAAGATGAGAAAATATCTTCCAGTAGCTTAA-TTTTGTTTCAGTTTCAATACTTTCAATATATCCAGTTTCAATAGTTGCATATAACTTCAAATATTTGGCTTTAATTGAAAATGTTCACCAAACTTTGAAAATGGGGAGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74161755 180 + 122973662 ATATATTATTTCAACAGTAAGTG--TCCCAATGCTGAAGATGAAGATGAGAAAATATCTTCCAGTAGCTTAA-TTTTTTTTCAGTTTCAATACTTTCAATATATCCAGCTTCAATAGTTGCATATAACTTAAAATATTTGGCTTTAATTGAAAATGTTCACCAAACTTTGAAAATGGGGAGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29337826 180 + 172585720 ATATATTCTTTCAGCAGTAAGTG--TCCCAATGCTGATGATTAAGATGAGAAAATACCTTCCAGTAGCTTAA-TTTTTTTTCAGTTTCAATACTTTCAATATATCCAGTTTCAATAATTGCATATAACTTCAAATGTTTGGCTTTAATTGAAAATGTTCACCAAACTTTGAAAATGGGGAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28998432 180 - 170955103 ATATATTCTTTCAGCAGTAAGTG--TCCCAATGCTGATGATTAAGATGAGAAAATACCTTCCAGTAGCTTAA-TTTTTTTTCAGTTTCAATACTTTCAATATATCCAGTTTCAATAATTGCATATAACTTCAAATGTTTGGCTTTAATTGAAAATGTTCACCAAACTTTGAAAATGGGGAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1975593 180 -   2996164 ATATATTCTTTCAGCAGTAAGTG--TCCCAATGCTGATGATTAAGATGAGAAAATACCTTCCAGTAGCTTAA-TTTTTTTTCAGTTTCAATACTTTCAATATATCCAGTTTCAATAATTGCATATAACTTCAAATGTTTGGCTTTAATTGAAAATGTTCACCAAACTTTGAAAATGGGGAGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1847587 181 -   2157725 ATATATTCTTTCAGCAATAAGTG--TCCCAATGCTGATGATTAAGATGAGAAAATACCTTCCAGTAGCTTAATTTTTTTTTCAGTTTCTATACTTTCAATATATGCAGTTTCAATAATTGCATATAACTTCAAATGTTTGGCTTTAATTGAAAATGTTCACCAAACTTTGAAAATGGGGAGGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28297886 180 -  71996105 ATATATTCTTTCAGCAGTAAGTG--TCCCAATGCTGATGATGAAGATGAGAAAATACCTTCCAGTAGCTTAA-TTTTTTTTCAGTTTCAATACTTTCAATATATCCAGTTTCAATAATTGCATATAACTTCAAATGTTTGGCTTTAATTGAAAATGTTCACTAAACTTTGAAAATGGGGAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1975893 180 +   2316924 ATATATTCTTTCAGCAGTAAGTG--TCCCAATGCTGATGATTAAGATGAGAAAATACCTTCCAGTAGCTTAA-TTTTTTTTCAGTTTCAATACTTTCAATATATGCAGTTTCAATAATTGCATATAACTTCAAATGTTTGGCTTTAATTGAAAATGTTCACCAAACTTTGAAAATGGGGAGGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1856231 180 -   3067355 ATATATTCTTTCAGCAGTAAGTG--TCCCAATGCTGATGATGAAGATGAAAAAATACCTTCCAGTAGCTTAA-TTTTTTTTCGGTTTCAATACTTTCAATATATCCAGTTTCAATAATTGCATATAACTTCAAATGTTTGGCTTTAATTGAAAATGTTCACCAAACTTTGAAAATGGGGAGGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171383819 176 - 171630274 ATATTTTCTTTCAACA---ACTG--TCCCAAGTCTGAAGATGAAGATGAGAAAATATCTTCCAGTAGCTCAA-TTTTTTTCCA-TTTCAATACTTTCAATATATCCAGTTTCAATAATTGCATATAACTTCAGATACTGTGCTTTGATTGAAAGTGTTCACCAAACTCTTAAAGTGGGGAGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            211300 180 -    375362 ATATATTCTTTCAACAGCCACTG--TTCCAAGTCTGATGATGAAGATGAGAAAACATCTTCCAGTAGCTGAA-TTTTTTTTCAGTTTCAATACTTTCAATATATCCAGTTTCAGTAATTGTATGTAACTTCAGATATTGTGCTTTAATTGAAAATGTTCACTAAACTTTGAAAATGGGGAGGG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      209861 180 -    373274 ATACATTCTTTCAACAGCCACTG--TTCCAAGTCTGATGATGAAGATGAGAAAACATCTTCCAGTAGCTCAA-TTTTTTTTCAGTTTCAATACTTTCAACATATCCAGTTTCAATAATTGTGTATAACTTCAGATATTGTGCTTTAATTGAAAATGTTCACTAAACTTTGAAAATGGGGAGAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      148932 180 -    285216 ATATATTCTTTCAACAGCAACTG--TTCCAAGACTGATGATGAAGATGAGAAAATATCTTCCAGTAGCTCAA-TTCTTTTTCAGTTTCAATACTTTCAATATATCTAGTTTCGATAATTGTATATAACCTCAGATACTGTGCTTTAATTGAAAATGTTCACCAAACTTTGAAAATGGGGACGG
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      938414 175 -   3516910 --ATATTCTTTCCACAGTAAGAGAATCCCAATGCTGATGATAAAGATGAGAAAATATCTTCCAGGGGat----ttttttttcattttcagtaattttaa--tattcagtttcaGTAGTTGCATGTAACTTCAAATATTGCGCTTTACTTGAAAATGCTCACCAAACTTTGAAAAAGGGGAGAG
i proCoq1.NW_012147953v1   C 0 I 266
s otoGar3.GL873742           1523220 183 -   2232465 ATATATTCTTTCCACAATAAGAGACTCCCAATGCCGGTGATAAAGATGAGAAAATACCTTCCAGGGGATTAACTTATTTTTCAGTTTTAGTAGTTTCAATGTATTCAGTCTCGATGGTTGCATAGAACTTCAAATATTTTGCTTTAATTGAAAATGCTCACCAAACTTCAGAACAAAAGATAA
i otoGar3.GL873742         I 295 C 0
e canFam3.chr35             25872356 6664 +  26524999 I

a score=1188712.000000
s hg38.chr6_GL000254v2_alt    145009 130 +   4827813 AGAGTTGCACATATTATACACAATATGTATGTGTAttgcatcaaaca--c--ttataatgtgtcttgtacaggttccagtttccagttatttaaagggattaagaacttc----------aagac-tg-aatctgagtggagactc
s panTro5.chr6              29126138 129 + 175400573 AGAGTTGcacttattaga-gttttatgtatgtgtattgcatcaaaca--c--ttataatgtgtcttgtacaggttccagtttccagttatttaaagggattgagaacttc----------aagac-tg-aatctgagtggagactc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29360483 129 + 173848474 AGAGTTGcacttattaga-gttttatgtatgtgtattgcatcaaaca--c--ttataatgtgtcttgtacaggttccagtttccagttatttaaagggattgagaacttc----------aagac-tg-aatctgagtggagactc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5160687 129 +   6154872 AGAGTTGCACTTATTACA-GTTTTTTGTATGTGTAttgcatcaaaca--c--ttataatgtgtcttgtacaggttccagtttccagttatttaaagggattgagaacttc----------aagac-tg-aatctgagtggagactc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74161935 129 + 122973662 AGAGTTGcacttattggg-gttttatgtatgtttattgcatcaaaca--c--ttagaatgtgtcttgtacaggttccagtttccagttatttaaagggattgagaacttc----------aagac-tg-aatctgagtggagactc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29338006 125 + 172585720 GGAGTTGcacttattgga-gttctatgtatgtttattgcatcacaca--c--ttagaatgtgtattgtacagtttc--gtttccagttatttaaagggattgagaacttc----------aagac----aatctgagtggagactc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28998612 125 - 170955103 GGAGTTGcacttattgga-gttctatgtatgtttattgcatcacaca--c--ttagaatgtgtattgtacagtttc--gtttccagttatttaaagggattgagaacttc----------aagac----aatctgagtggagactc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1975773 125 -   2996164 GGAGTTGcacttattgga-gttctatgtatgtttattgcatcacaca--c--ttagaatgtgtattgtacagtttc--gtttccagttatttaaagggattgagaacttc----------aagac----aatttgagtggagactc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1847768 125 -   2157725 GGAGTTGcacttattgga-gttctatgtatgtttattgcatcacaca--c--ttagaatgtgtattgtacagtttc--gtttccagttatttaaagggattgagaacttc----------aagac----aatctgagtggagactc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28298066 127 -  71996105 AGAGTTGCACTTATTGGA-GTTCTATGTATGTTTACTGCATCACACA--C--TTAGAATATGTATTGTACAGGTTC--CTTTCCAGTTATTTAAAGGGATTGAGAACTTC----------AAGAC-TG-AATCTGAGTGGAGACTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1976073 125 +   2316924 GGAGTTGcacttattgga-gttctatgtatgtttattgcatcacaca--c--ttagaatgtgtattgtacagtttc--gtttccagtgatttaaagggattgagaacttc----------aagac----aatctgagtggagactc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1856411 127 -   3067355 GGAGTTGcacttattgga-gttctatgtatatttattgcatcacaca--c--ttagaatgtgtattgtacaggttc--gtttccagttatttaaagggattgagaacttc----------aagct-tg-aatctgagtggagactc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171383995 132 - 171630274 GGAGTTCAATTTACAGGA-GTTCCCTGTATGTTTATTGCATTAAACA--CATTTAGAATGTGTCTTGTACAGGTTCCAATTTCCAATTATTTGAAAGCATTGAGAACCTC----------ACGAC-TGAAATCTGAGCAGAGAATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            211480 130 -    375362 GGAGTTCAATTTattgga-gttccatgtatgtttattacattaaaca--ca-ttagaatgtgtcttgtacaggttccaatttccagttatttgaaaggattgagaacttc----------aagac-tg-aatctgagtggagaatc
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      210041 120 -    373274 GGAGTTCAATTTattgga-gttccatgtatgtttattgcattaaaca--catttagaatgtgtcttgtacaggttccaatttcc-----------aggattgagaacttc----------aagac-tg-aatctgagtggagaatc
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      149112 129 -    285216 GGAGTTCAATTTattgga-gttccatgtatgtttattgcattaaaca--catttagaatgtgtcttgtacaggttccaatttccagttatttgaaaggattgagaacttt----------aggac----aatctgagtggagaatc
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1523403 140 -   2232465 --AAATCTATTAATTAAA-GTTCCTTGTGTGTTTATTGCATTAAATAACC--TTAGAATGTGTCTTGTACAGATTCCAGTTTCCATTTATTTAAAGGGAGTGAGGATTTCCTTTAATAATAAGATGTG-AATCTGAGTAAAGAATT
i otoGar3.GL873742         C 0 C 0
e proCoq1.NW_012147953v1      938589 266 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I

a score=1197346.000000
s hg38.chr6_GL000254v2_alt    145139 128 +   4827813 TGACATATAAATACAGACT--TATCCaattgggatcatactgcatatgtttttattatttgctttattctcaacattgtattcagaacatcttcccatgttatcaaaaattattttagaacaGAGAATCC
s panTro5.chr6              29126267 128 + 175400573 TGACATATAAATACAGACT--TATCCaattgggatcatactgcatatgtttttattatttgctttattctcaacattgtattcagaacatcttcccatgttatcaaaaattattttagaacaGAGAATCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29360612 128 + 173848474 TGACATATAAATACAGACT--TATCCaattgggatcatactgcatatgtttttattatttgctttattctcaacattgtattcagaacatcttcccatgttatcaaaaattattttagaacaGAGAATCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5160816 128 +   6154872 TGACATATAAATACAGACT--TATCCaattgggatcatactgcatatgtttttattatttgctttattctcaacattgtattcagaacatcttcccatgttatcaaaaattattttagaacaGAGAATCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74162064 126 + 122973662 TGACATATAAATAC--ACG--TATACaattgggatcatactgcatatgtttttattatttgctttattctcaacattgtattcagaacatcttcccatgttattaaaaattattttagaaaaGAGAATCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29338131 128 + 172585720 TGACATATAAATACAGACT--TacagaattgggatcatactgtatatgtttttgttgtttgctttattctcaacattgttttcagaacatcttcccatgttattaaaaattattTTAGAAAGGAGAATCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28998737 128 - 170955103 TGACATATAAATACAGACT--TacagaattgggatcatactgtatatgtttttgttgtttgctttattctcaacattgttttcagaacatcttcccatgttattaaaaattattTTAGAAAGGAGAATCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1975898 128 -   2996164 TGACATATAAATACAGACT--TacagaattgggatcatactgtatatgtttttgttgtttgctttattctcaacattgttttcagaacatcttcccatgttattaaaaattattTTAGAAAGGAGAATCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1847893 128 -   2157725 TGACATATAAATACAGACT--TacagaattgggatcatactgtatatgtttttgttgtttgctttattctcaacattgttttcagaacatcttcccatgttattaaaaattattTTAGAAAGGAGAATCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28298193 128 -  71996105 TGACATATAAATACAGACT--TacagaattgggatcatactgtatatgtttttgttgtttgctttattctcaacattgttttcagaacatcttcccatgttattaaaaattattTTAGAAAGGAGAATCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1976198 128 +   2316924 TGACATATAAATACAGACT--TacagaattgggatcatactgtatatgtttttgttgtttgctttattctcaacattgttttcagaacatcttcccatgttattaaaaattattTTAGAAAGGAGAATCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1856538 130 -   3067355 TGACATATAAATACAGACTTATacagaattgggatcatactgcatatgtttttgttgtttgctttattctcaacattgtattcagaacatcttcccatgttattaaaaattattTTAGAAAGGGGAATCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171384127 126 - 171630274 TGCCGTGTAAATACAGACT--T--ACAGCtgggatcatattgctcatctttttgttgtttgctttattctcaacactgtaatctgaacatcttcccaggtcattaaaaattattTTAGCAAAGAGAATCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            211610 128 -    375362 TGCcatgtaaatatagact--tacacagttgggatcataatgcgtgtctttttgttgtttgttttattctcaacattgtattctgaacatttccccatgttattaaaaattcttTTAGCAAAGAGAATCC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      210161 128 -    373274 TGCcatgtaaatatagact--tacacagttgggatcataatgtgtgtctttttgttgtttgctttattctcaacattgtattctgaacattttcccatgttattaaaaattctttgaGCAAAGAGAATCC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      149241 128 -    285216 TGCCATGAAAATATAGACT--TacacagttgggatcatattgcatatcgttttgttgtttgctttattctcaacattgtattctgagcatcttcccatgttattaaaaattcttTTAGCAAAGAGAATCC
i aotNan1.NW_018494050v1   C 0 C 0
e proCoq1.NW_012147953v1      938589 266 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I
e otoGar3.GL873742           1523543   0 -   2232465 C

a score=194788.000000
s hg38.chr6_GL000254v2_alt    145267 17 +   4827813 TCTTCAGTTTTTACATT
s panTro5.chr6              29126395 17 + 175400573 TCTTCAGTTTTTACATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29360740 17 + 173848474 TCTTCAGTTTTTACATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5160944 17 +   6154872 TCTTCAGTTTTTACATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74162190 17 + 122973662 TCTTCAGTTTTTACATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29338259 17 + 172585720 TCTTCAGTTTTTACATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28998865 17 - 170955103 TCTTCAGTTTTTACATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1976026 17 -   2996164 TCTTCAGTTTTTACATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1848021 17 -   2157725 TCTTCAGTTTTTACATT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28298321 17 -  71996105 TCTTCAGTTTTTACATT
i chlSab2.chr17            C 0 I 9
s manLeu1.NW_012104165v1     1976326 17 +   2316924 TCTTCAGTTTTTACATT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1856668 17 -   3067355 TCTTCAGTTTTTACATT
i colAng1.NW_012115566v1   C 0 I 9
s calJac3.chr4             171384253 17 - 171630274 TCTTCAGTTTCGACATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            211738 17 -    375362 TCTTCAGTTTCTACATT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      210289 17 -    373274 TCTTCACTTTCTACATT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      149369 17 -    285216 TCTTCAGTTTCTACATT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1523543 17 -   2232465 TTTTCAATTTTTACATT
i otoGar3.GL873742         C 0 C 0
e proCoq1.NW_012147953v1      938589 266 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I

a score=33336.000000
s hg38.chr6_GL000254v2_alt    145284 8 +   4827813 TGTCCTTG
s panTro5.chr6              29126412 8 + 175400573 TGTCCTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29360757 8 + 173848474 TGTCCTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5160961 8 +   6154872 TGTCCTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74162207 8 + 122973662 CGTCCTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29338276 5 + 172585720 ---TCATG
i rheMac8.chr4             C 0 I 4
s macFas5.chr4              28998882 5 - 170955103 ---TCATG
i macFas5.chr4             C 0 I 4
s macNem1.NW_012011356v1     1976043 5 -   2996164 ---TCATG
i macNem1.NW_012011356v1   C 0 I 4
s cerAty1.NW_012001495v1     1848038 5 -   2157725 ---TCATG
i cerAty1.NW_012001495v1   C 0 I 4
s manLeu1.NW_012104165v1     1976343 5 +   2316924 ---TCATG
i manLeu1.NW_012104165v1   C 0 I 4
s calJac3.chr4             171384270 8 - 171630274 TGCCCTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            211755 8 -    375362 TGCCCTTG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      210306 8 -    373274 TGCCCTTG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      149386 8 -    285216 TGCCCTTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1523560 8 -   2232465 TACCTCTG
i otoGar3.GL873742         C 0 C 0
e proCoq1.NW_012147953v1      938589 266 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I
e colAng1.NW_012115566v1     1856685 9 -   3067355 I
e chlSab2.chr17             28298338 9 -  71996105 I

a score=308132.000000
s hg38.chr6_GL000254v2_alt    145292 29 +   4827813 TACTTGTTCATCATGGCGATATTATGTTT
s panTro5.chr6              29126420 29 + 175400573 TACTTGTTCATCATGGCGATATTATGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29360765 29 + 173848474 TACTTGTTCATCATGGCGATATTATGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5160969 29 +   6154872 TACTTGTTCATCATGGCGATATTATGTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74162215 29 + 122973662 TACTTGTTCATCATGGTGATATTATGTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29338285 29 + 172585720 TATTTGTTCATCATGGCGATATTATGTTT
i rheMac8.chr4             I 4 C 0
s macFas5.chr4              28998891 29 - 170955103 TATTTGTTCATCATGGCGATATTATGTTT
i macFas5.chr4             I 4 C 0
s macNem1.NW_012011356v1     1976052 29 -   2996164 TATTTGTTCATCATGGCGATATTATGTTT
i macNem1.NW_012011356v1   I 4 C 0
s cerAty1.NW_012001495v1     1848047 29 -   2157725 TATTTGTTCATCATGGCGATATTATGTTT
i cerAty1.NW_012001495v1   I 4 C 0
s chlSab2.chr17             28298347 29 -  71996105 TATTTGTTCATCATGGCGATATTATATTT
i chlSab2.chr17            I 9 C 0
s manLeu1.NW_012104165v1     1976352 29 +   2316924 TATTTGTTCATCATGGCGATATTATGTTT
i manLeu1.NW_012104165v1   I 4 C 0
s colAng1.NW_012115566v1     1856694 29 -   3067355 TATTTGTTCATCATGGCGATATTATGTTT
i colAng1.NW_012115566v1   I 9 C 0
s calJac3.chr4             171384278 29 - 171630274 TACATGTTCATCACGGTGATGTTATGTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            211763 29 -    375362 TACTTGTTCGTCATGGTGATGTTATGTTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      210314 29 -    373274 TACTTGTTCATCATGGTGATGTTATGTTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      149394 29 -    285216 TACTTGTTCATCATGGTGATGTTACGTTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1523568 26 -   2232465 TATGTGTTTATAAT---AACATTGTGTTT
i otoGar3.GL873742         C 0 I 4
e proCoq1.NW_012147953v1      938589 266 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I

a score=2923081.000000
s hg38.chr6_GL000254v2_alt    145321 299 +   4827813 TGTTAATGGTTGCTGCATAGATAg-ggcgcagtggctggctcttgtaatcccagcactttggaagaga----cgggtgggtctcttgagtccaggagttccagagcagcttgggcagcatggcgagacc-ccagctatacaaatac------aaaaaaattagctgggcgtggtggcgcgcgcctgtagtcccagctactcaggaggctgaggtgggaggatccctttagcccaggaggtcgaggctgcagtgagccgttatagcgtcactgcactccagcctgggtgacagagtgagaccc-tgtctc---aaa
s panTro5.chr6              29126449 303 + 175400573 TGTTAATGGTTGCTGCATAGATAg-ggcgcagtggctggctcttgtaatcccagcactttggaagtgagagtcgggtgggtctcttgagtccaggagttccagagcagcttgggcagcatggcgagacc-ccagctatacaaatac------aaaaaaattagctgggcgtggtggcacgcgcctgtagtcccagctactcaggaggctgaggtgggaggatccctttagcccaggaggtcgaggctgcagtgagccgttatagcgtcactgcactccaacctgggtgacagagtgagaccc-tgtctc---aaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29360794 303 + 173848474 TGTTAATGGTTGCTGCATAGATAg-ggcgcagtggctggctcttgtaatcccagcactttggaagtgagagacgggtgggtctcttgagtccaggagttccagagcagcttgggcagcatggcgagacc-ccagctatacaaatac------aaaaaaattagctgggcgtggtggcgcgcgcctgtagtcccagctactcaggaggctgaggtgggaggatccctttagcccaggaggtcgaggctgcagtgagccgttatagcgtcactgcactccaacctgggtgacagagtgagaccc-tgtctc---aaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5160998 303 +   6154872 TGTTAATGGTTGCTGCATAGACAg-ggcgcagtggctggctcttgtaatcccagcactttggaagtaagagacggctgggtctcttgagtccaggagttccagagcagcttgggcagcatggcgagacc-ccagctatacaaatac------aaaaaaattagctgggcgtggtggcgcgcgcctgtagtcccagctactcaggaggctgaggtgggaggatccctttagcccgggaggtcgaggctgcagtgagccgttatagcgtcactgcactccagcctgggtgacagagtgagaccc-tgtctc---aaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74162244 304 + 122973662 TGTTAATGGTTGCTGCATAGACAGTTgcatggtggctggctcttataatcccagcactttggaagtaagagacgggtgggtctcttgagtccaggagttccagagcagcttgggcagcatggcgagacc-ctggctatacaaatac------aaaaaaattagctgggtgtggtggcgcgtgcctgtagtcccagctactcaggaggctgaggtgggaggatcccttgagcctgggaagtcgaggctgcagtgagctgttatagcgtcactgcactccagcctgggtgatagagtgagaccc-tgtctc---aaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29338314 303 + 172585720 TGTTAATGGTTGCTGCATAGACAg-ggcgcggtggctggcccttgtaatcctagcactttggaaggcagagacgagtgggtctcttgagtccaggagttctagaccagcttgggcaatatggcgagacc-ccggctctacaaatac------aaaaaaattagctgggcgtggtggcgcgcgcctgtagtcccagctacttaggcggctgagatgggaggatcccttgagcccgggaggtggaggctgcagtgagccgttataatgtcactgcactccagcctgggtgacggagtgacaccc-tgtttc---aaa
i rheMac8.chr4             C 0 I 34
s macFas5.chr4              28998920 303 - 170955103 TGTTAATGGTTGCTGCATAGACAg-ggcgcggtggctggcccttgtaatcctagcactttggaaggcagagacgagtgggtctcttgagtccaggagttctagaccagcttgggcaatatggcgagacc-ccggctctacaaatac------aaaaaaattagctgggcgtggtggcgcgcgcctgtagtcccagctactcaggcggctgagatgggaggatcccttgagcccgggaggtggaggctgcagtgagccgttataatgtcactgcactccagcctgggtgacggagtgagaccc-tgtttc---aaa
i macFas5.chr4             C 0 I 32
s macNem1.NW_012011356v1     1976081 303 -   2996164 TGTTAATGGTTGCTGCATAGACAg-ggcgcggtggctggcccttgtaatcctagcactttggaaggcagagacgagtgggtctcttgagtccaggagttctagaccagcttgggcaatatggcgagacc-ccggctctacaaatac------aaaaaaattagctgggcgtggtggcgcgcgcctgtagtcccagctactcaggcggctgagatgggaggatcccttgagcccgggaggtggaggctgcagtgagccgttataatgtcactgcactccagcctgggtgacggagtgagaccc-tgtttc---aaa
i macNem1.NW_012011356v1   C 0 I 342
s cerAty1.NW_012001495v1     1848076 303 -   2157725 TGTTAATGGTTGCTGCATAGACAg-ggcacggtggctggcccttgtaatcctagcactttggaaggcagagacgagtgggtctcttgagtccaggagttctagaccaggttgggcaatatggcgagacc-ccggctctacaaatac------aaaaaaattagctgggcgtggtggcgcacgcctgtagtcccagctactcaggaggctgagatgggaggatcccttgagcccgggaggtgaaggctgcagtgagccgttataatgtcactgcactccagcctgggtgacggagtgagaccc-tgtttc---aaa
i cerAty1.NW_012001495v1   C 0 I 27
s chlSab2.chr17             28298376 306 -  71996105 TGTTAATGGTTGCTGCATAGACAg-ggcgcggtggctggcccttgtaatcctagcactttggaaggcagagacgagtgggtctcttgagtccaggagttctagaccagcttgggcaatatggcgagacc-ccggttctacaaatac------aaaaaaattagctgggcgtggtggcgcgcacctgtagtcccagctactcaggaggctgagatgggaggatcccttgagcccgggaggtcgaggctacagtgagccgttataatgtcactgcactccagcctgagtgacggagtgagaccc-tgtctcaaaaaa
i chlSab2.chr17            C 0 I 22
s manLeu1.NW_012104165v1     1976381 303 +   2316924 TGTTAATGGTTGCTGCATAGACAg-ggcgtggtggctggcccttgtaatcctagcactttggaaggcagagacgagtgggtctcttgagtccaggagttctagaccagcttgggcaatatggcgagacc-ccggctctacaaatac------aaaaaaattagctgggcgtggtggcgcgcgcctgtagtcccagctactcaggaggctgagatgggaggatcccttgagcccggggggtggaggctgcagtgagccgttataatgtcactgcactccagcctgggtgacggagtgagaccc-tgtttc---aaa
i manLeu1.NW_012104165v1   C 0 I 22
s colAng1.NW_012115566v1     1856723 303 -   3067355 TGTTAATGGTTGCTGCATAGACAg-ggcgcggtggctggctcttgtaatcctagcactttggaaggcagagacgagtgggtctcttgagtccaggagttctagaccagcttgggcaatatggcgagacc-ccggctctacaaatac------aaaaaaattagctgggcgtggtggcacccgcctgtagtcccagctactcaggaggctgagatgggaggatcccttgagcccgggaggtcgaggctgcagtgagccgttataatgtcactgcactccagcctgggtgacggagtgagacca-tgtctc---aat
i colAng1.NW_012115566v1   C 0 I 12
s calJac3.chr4             171384307 310 - 171630274 TGTTAATCGTTGCTGCATAGACAg-ggcatggtggctcagtcctgtaatcccagcactttgaaaggccgagacagatgggtcgcttgagtccaggagtttgagaccagcctgggcaaaatggctagacctctggctctacaaatacaaaaaaaaaaaaattagctgggcgtggtggtgagcgcctgtagtcccagctactctggaggctgaggtgggaggatcccttaagcctgggaggtcgaggctgcactgagctgttacagtgtcactgcactccagcctggttgacagagtgaaactc-tgtctc---aaa
i calJac3.chr4             C 0 I 9
s saiBol1.JH378348            211792 306 -    375362 TGTTAATCATTGCTGCATAGACAg-ggcgtggtggctcactcttgtaatcccagcactttgaaaggccgagacagatgggtcgcttgagtccaggagtttgagaccagcctgggcaaaatggctagacttctggctctacaaatac-----aaaaaaaattagctgggcatggtggcaagcgcctgtagtcccagctacgctggaggctgaggtgggaggatcccttaagcccgggaggttgaggctgcactgagctgttatagggtcactgcactccagcctgggtgacagagtgagactcttgtctc---aaa
i saiBol1.JH378348         C 0 I 6
s cebCap1.NW_016108108v1      210343 307 -    373274 TGTTAATCGTTGCTGCATAGACAg-ggcatggtggctcactcttgtaatcccagaactttgaaaggccgagacagatgagtcgcttgagtccaggagtttgagaccagcctaggcaaaatggctagacttctggctctacaaatac---aaaaaaaaaattagctgtgcgtggtggtgagcacctgtagtcccagctactctggaggctgacgtgggaggatcccttaagcctgggaggtcgaggctgcactgagctgttatagtgtcactgtactccagcctgggtaacagagtgagactc-tgtctc---aaa
i cebCap1.NW_016108108v1   C 0 I 3
s aotNan1.NW_018494050v1      149423 306 -    285216 TGTTAATCGTTGCTGCATAGACAg-ggcatggtggctcactcttgtaatcccagcactttgaagggccaagacagatgggtcgcttgagtccaagagtttgagaccagcctgggcaaaatggctagacctctggctctacaaatac----aaaaaaaaattaactgggcgtggtggcgagtgcctgtagtcccagctactctagagcctgaggtgggagaatcccttaaacctgggaggtcgaggctgcagtgagctgttatagtgtcactgcactccagcctgggtgacagagtgagactc-tgtctc---aaa
i aotNan1.NW_018494050v1   C 0 I 9
e proCoq1.NW_012147953v1      938589 266 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I
e otoGar3.GL873742           1523594   4 -   2232465 I

a score=2781591.000000
s hg38.chr6_GL000254v2_alt    145620 317 +   4827813 aaTAATA---ggctgggcgcagtggctcacg-cggtaatcccagcactttgggaagccgaggagggcggatcacttgcagtcaggagttccagaccagccatggcccaacatggtgaaatcccgtctttactaaaaatgc-aaaaattagccgggtgtggtggcgcatgcctgtagtctcagccattcgtgaggttgaggcaagagaattgctt----cctggaggcggaggttgcagtgagcccagatcgtgccactgtgcactccagcttgggtgacagagcaagactctgtctc--aaaaacaaaacaacaacaacaacaaaata
s panTro5.chr6              29126752 317 + 175400573 aaTAATAATAggctgggcgcagtggctcacg-cggtaatcccagcactttgggaagccgaggagggcgaatcacttgcggtcaggagttccagaccagccatggcccaacatggtgaaatcccgtctttactaaaaatgc-aaaaattagccgggtgtggtggcgcatgcctgtagtctcagccattcgtgaggttgaggcaagagaattgctt----cctggaggcggaggttgcagtgagcccagatcgtgccactgtgcactccagctttggtgacagagcaagactctgtctc--aaaaacaaaacaacaacaacaa---aata
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29361097 316 + 173848474 aaT-ATAATAggctgggcgcagtggctcacg-cggtaatcccagcactttgggaagccgaggagggcgaatcacttgcggtcaggagttccagaccagccatggcccaacatggtgaaatcccgtctttactaaaaatgc-aaaaattagccgggtgtggtggcgcatgcctgtagtctcagccattcgtgaagttgaggcaagagaattgctt----cctggaggcggaggttgcagtgagcccagatcgtgccactgtgcactccagctttggtgacagagcaagactctgtctc--aaaaacaaaacaacaacaacaa---aata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5161301 315 +   6154872 aaTAATAATAggctgggcgcagtggctcacg-cggtaatcccagcactttgggaagccgaggagggcggatcacttgcggtcaggagttccagaccagccatggcccaacatggtgaaatcccgtctttactaaaaatgc-aaaaattagccgggtgtggtggcgcatgcctgtagtctcagccattcgtgaggttgaggcaagagaattgctt----ccgggaggcggaggttgcagtgagcccagatcgtgccactgtgcactccagcttgggtgacagagcaagactc--tctc--aaaaacaaaacaacaacaacaa---aata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74162548 312 + 122973662 aataaaaaTAggctgggcgcagtggctcacaccagtaatcccagcactttgggagactgaggagggcggatcacttggggtcaggagttccagaccagccatggcccaacatggtgaaatcccgtctttactaaaaatac-aaaaattagccaggtgtggtagtgcatgcctgtagtctcagccactcgtgaggttgaggcaagagaattgctt----ccgggaggcggaggttgcagtgagcccagatcgcgccactgtgcactccagcttgggtgacagagcaagactctgtctc--aaaaacaaaacaacaacaa---------a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29338651 319 + 172585720 ---aataataggccggacgcagtggctcacaccggtaatcccagcactttgggaggccgaggcgggcggatcacttgaggtcaggagatcgataccatcc-tggcccaacatagtgaaaccccgtctttactaaaaatacaaaaaactagccgggcgaggtggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtaaacccgggaggcggagcttgcagtgagctgagatccggccac--tgcactccagcctgggcgacagagcgagactccgtcgcggaaaaaaaaaacaaaaaaaacaa---aaTA
i rheMac8.chr4             I 34 C 0
s macFas5.chr4              28999255 315 - 170955103 ---aataataggccggacgcagtggctcacaccggtaatcccagcactttgggaggccgaggcgggcggatcacttgaggtcaggagttccataccagcc-tggcccaacatagtgaaatcccgtctttactaaaaatac-aaaaattagccgggtgtggtggcgcacgcctgtagtctcagccgctcgtgaggttgaggcaggagaatcgctt----ccgagaggcggaggttgcagtgagccgagatcgcaccac--tgcactccagcttgggtgacagagcgagactctgtctc--aaaaacaaaacaacaacaacaaaataata
i macFas5.chr4             I 32 C 0
s macNem1.NW_012011356v1     1976726 312 -   2996164 ---aaTGATAggccggacgcagtggctcacaccggtaatcccagcactttgggaggccgaggtgggcggatcacttgaggtcaggagttccataccagcc-tggcccaacatagtgaaatcccgtctttactaaaaatac-aaaaattagccgggtgtggtggcgcacgcctgtagtctcagccgctcgtgaggttgaggcaggagaatcgctt----ccgagaggcggaggttgcagtgagccgagatcgcaccac--tgcactccagcttgggtgacagagcgagactctgtctc--aaaaacaaaacaacaacaacaa---aaTA
i macNem1.NW_012011356v1   I 342 C 0
s cerAty1.NW_012001495v1     1848406 311 -   2157725 ---aataataggccggacgcagtggctcacaccggtaatcccagcactttgggaggccgaggcgggcagatcacttgaggtcaggagttccataccagcc-tggcccaacatggtgaaatcccgtctttactaaaaatac-aaaaattagccgggtgtggtggcgcacgcctgtagtctcagccgctcgtgaggttgaggcaggagaatggctt----ccgagaggcggaggttgcagtgagccgagatcgcaccac--tgcactccagcttgggtgacagagcgagactctgtctc---aaaacaaaacaacaacaacaa---aaTA
i cerAty1.NW_012001495v1   I 27 C 0
s chlSab2.chr17             28298704 307 -  71996105 ---aataataggctggacgcagtggctgacaccggtaatcccagcactttgggaggccgaggcgggcggatcacttgaggtcaggagttccataccagcc-tggcccaacatagtgaaatcccgtctttactaaaaatac-aaaaattagccgggtgtggtggcgcacgcctgtagtctcagccgctcgtgaggttgaggcaggagaatcgctt----ccgagaggaggaggttgcagtgagccgagatcgcgccac--tgcactccggcttgggtgacagagcgagactctgtctc--a-----aaaacaacaacaacaa---aata
i chlSab2.chr17            I 22 C 0
s manLeu1.NW_012104165v1     1976706 312 +   2316924 ---aataataggccggacgcagtggctcacaccggtaatcccagcactttgggaggccgaggcgggcggatcacttgaggtcaggagttccataccagcc-tggcccaacatagtgaaatcccgtctttactaaaaatac-aaaaattagccgggtgtggtggcgcacgcctgtagtctcagccgctcgtgaggttgaggcaggagaatcgctt----ccgagaggcggaggttgcagtgagccgagatcgcaccac--tgcactccagcttgggtgacagagcgagactctgtctc--aaaaacaaaacaacaacaacaa---aaTA
i manLeu1.NW_012104165v1   I 22 C 0
s colAng1.NW_012115566v1     1857038 312 -   3067355 ---aataataggccggacgcagtggctcacaccggtaatcccagcactttgggaggtcgaggtgggcggatcacttgaggtcaggagttccataccagcc-tggcccaacatagtgaaatcccgtctttactaaaaatac-aaaaattagccgggtgtggtggcgcacgcctgtagtctcagccgctcgtgaggttgagacaggagaatcgctt----ccgagaggcggaggttgcagtgagccgagatcgcgccac--tgcactccagcttgggtgacagagcgagactctgtctc--aaaaacaaaacaacaacaacaa---aata
i colAng1.NW_012115566v1   I 12 C 0
s calJac3.chr4             171384626 308 - 171630274 ---aataataggttgggcgtggtggcgcacaccagtaatcccagcactttgggaggccaaggcaggcggatcacttgaggtcaggagtttgagaccagcc-tgg-ccaacagagtgaaaccccgtctttactaaaaacac-aaaaattagctggacgtggtgccgcacgcttgtaatcccagctactcaggcggttaaggcagaagaatctcttgaactctggaagtggaagggctagtgagccaagaacgtgccac--tgcactccagcctgggtagcagagggaga----ctctc--aaaaacaaaacaacaacaacaa------a
i calJac3.chr4             I 9 C 0
s saiBol1.JH378348            212104 309 -    375362 ---AATAATAggttgggcgtggtggctcacaccggtaatcccagcactttgggaggccaaggcaggtggatcacttgaggtcaggagtttgagaccagcc-tgg-ccaacatggtgaaaccctgtctttactaaaaatac-aaaaattagccgggtatggtggcgcatgcctgtaatcccagctactcgggaggttgaggcagaagaatctcttgaacccgggaggcggaggttctagtgagccgagatcgtgccac--cgcactccagcctgggtagcagagggagactctctctc--aaaaacaa---aacaacaacaa------a
i saiBol1.JH378348         I 6 C 0
s cebCap1.NW_016108108v1      210653 312 -    373274 ---AATAATAggttgggcgtggtggctcacaccggtaatcccagcactttgggaggccaaggcaggcggatcacttgagggcagaagtttgagaccagcc-tgg-ccaacatggtgaaaccccgtgtttactaaaaatac-aaaaattagccgggcgtggtggcacacgcctgtaatcccagctactcaggaggttgaggcagaagaatctcttgaacccgggaggcggaggttctagtgagccgagatcgtgctac--tgcactccagtctgggtagcagagggagactctctctc--aaaaacaaaacaacaacaacaa------a
i cebCap1.NW_016108108v1   I 3 C 0
s aotNan1.NW_018494050v1      149738 312 -    285216 ---aataataggttgggcatggtggctcacaccggtaagcccagcactttgggaggccaaggcaggtggatcacttgaggtcaggagtttgagaccagcc-tgg-ccaacatggtgaaactccgtctttactaaaaatac-aaaaattagctgggcatggtggcgcacgcctgtaattccagctacttgggaggttgaggcagaagaatctcttgaacccgggaggcggaggttctagtgagccgagatcgcgccac--tgcattccaccctgggtagcagagggagactctctctc--acaaacaaaacaacaacaacaa------a
i aotNan1.NW_018494050v1   I 9 C 0
e proCoq1.NW_012147953v1      938589 266 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I
e otoGar3.GL873742           1523594   4 -   2232465 I

a score=46080.000000
s hg38.chr6_GL000254v2_alt    145937 4 +   4827813 ataa
s panTro5.chr6              29127069 4 + 175400573 ataa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29361413 4 + 173848474 ataa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5161616 4 +   6154872 ataa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74162860 4 + 122973662 aTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29338970 4 + 172585720 ATAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28999570 4 - 170955103 ataa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1977038 4 -   2996164 ATAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1848717 4 -   2157725 ATAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28299011 4 -  71996105 ataa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1977018 4 +   2316924 ATAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1857350 4 -   3067355 ataa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171384934 4 - 171630274 ataa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            212413 4 -    375362 aTAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      210965 4 -    373274 ataa
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      150050 4 -    285216 ataa
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1523598 4 -   2232465 ATAT
i otoGar3.GL873742         I 4 C 0
e proCoq1.NW_012147953v1      938589 266 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I

a score=935335.000000
s hg38.chr6_GL000254v2_alt    145941 88 +   4827813 taataatTGCTGTATCTTTAGGCAATCTTTGCAGTTTTTGCAGTAGATGTTAAGCTACCTTTCTAAAATGCAGTGGGACA-TTTTGTTG
s panTro5.chr6              29127073 88 + 175400573 taataatTGCTGTATCTTTAGGCAATCTTTGCAGTTTTTGCAGTAGATGTTAAGCTACCTTTCTAAAATGCAGTGGGACA-TTTTGTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29361417 88 + 173848474 taataatTGCTGTATCTTTAGGCAATCTTTGCAGTTTTTGCAGTAGATGTTAAGCTACCTTTCTAAAATGCAGTGGGACA-TTTTGTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5161620 88 +   6154872 taataatTGCTGTATCTTTAGGCAATCTTTGCAGTTTTTACAGTAGATGTTAAGCTACCTTTCTAAAATGCAGTGGGACA-TTTTGTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74162864 88 + 122973662 TAATAATTGCTGTATCTTTAGGCAATCTTTGCAGTTTTTACAGTAGAGATTAAGCTACCTTTCTAAAATGCAGTGGGACA-TTTTGTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29338974 89 + 172585720 TAATAATTGCCGTATCGTTAGGCAATCTTTGCAGTTTTTACAGTAGAGATTAAGCTACCTTTCGAAAATGCAGTGGGACATTTTTGTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28999574 89 - 170955103 taataatTGCCGTATCGTTAGGCAATCTTTGCAGTTTTTACAGTAGAGATTAAGCTACCTTTCGAAAATGCAGTGGGACATTTTTGTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1977042 89 -   2996164 TAATAATTGCCGTATCGTTAGGCAATCTTTGCAGTTTTTACAGTAGAGATTAAGCTACCTTTCGAAAATGCAGTGGGACATTTTTGTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1848721 89 -   2157725 TAATAATTGTCGTATCGTTAGGCAATCTTTGCAGTTTTTACAGTAGAGATTAAGCTACCTTTCGAAAATGCAGTGGGAAATTTTTGTTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28299015 89 -  71996105 taataatTGCCGTATCTTTAGGCAATCTTTGCAGTTTTTACAGTAGAGATTAAGCTACCTTTCTAAAATGCAGTGGAACATTTTTGTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1977022 89 +   2316924 TAATAATTGCCGTATCGTTAGGCAATCTTTGCAGTTTTTACAGTAGATATTAAGCTACCTTTCGAAAATGCAGTGGGACATTTTTGTTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1857354 89 -   3067355 taataatTGCCGTCTCTTTGGGCAATCGTGGCAGTTTTTACAGTAGAGATTAAGCTACCTTTCTAAAATGCAGTGGGGCATTTTTGTTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171384938 85 - 171630274 taataatTGCTGCATCTTTAGGCAATCTTTGCAGCTTTTACAGTAAAGCTTGAGCTAC---TGTAAAATCCAGTGGGCTA-TTCTGTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            212417 88 -    375362 TAACAATTGCTGCATCTTTAGGCAATCTTTGCAGCTTTTACAGTAAAGCTTAAGCCACCTTTCTAAAATGCAGTGGGCTA-TTCTGTTG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      210969 88 -    373274 taataatTGCTGCATCTTTAGGCAATCTTTGCAGCTTTTACAGTAAAGCTTAAGCTACCTTTCTAAAATGCAGTGGGATA-TTCTGTTG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      150054 88 -    285216 taataataGCTGCATCTTTAGGCAATGTTCGCAGCTTTTACAGTAAACCTTAAGCTACCTTTCTAAAATGCAGTGGGACA-TTCTGTTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1523602 87 -   2232465 TAACAATTGCTGCATCTTTAGATAATATTTGcagcttttagagttaaggttgtgctacctttgtaaaatgaattgggatgtttgagc--
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             16817 85 -    302817 tattaatatctgcatct----aaactccttgcagctcttagaatcaaggttaagctaccttcctaaagtgaaatgggacatttttgtcc
i dasNov3.JH561790         N 0 C 0
e proCoq1.NW_012147953v1      938589 266 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I

a score=922653.000000
s hg38.chr6_GL000254v2_alt    146029 80 +   4827813 TTTTTG--TGTTCTGCAACAGTTTATGTAAACCTGTATTGGAATGACA-AGAAG--TACGATATTATTCCAAATCTTGTACTCAT
s panTro5.chr6              29127161 80 + 175400573 TTTTTG--TGTTCTGCAACAGTTTATGTAAACCTGTATTGGAATGACA-AGAAG--CACGATATTATTCCAAATCTTGTACTCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29361505 80 + 173848474 TTTTTG--TGTTCTGCAACAGTTTATGTAAACCTGTATTGGAATGACA-AGAAG--CACGATATTATTCCAAATCTTGTACTCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5161708 80 +   6154872 TTTTTG--GGTTCTGCAACAGTTTATGTAAACCTGTATTGGAATGACA-AGAAG--CACGATATTATTCCAAATCTTGTACTCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74162952 80 + 122973662 TTTTTG--TGCTCTGCAACAGTTTATGTAAACCTGTATTGGAATGACA-AGAAG--CACGATATTATTCCAAATCTTGTACTCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29339063 82 + 172585720 CTTTTG--TGCTCTGCAACAGTTTATGTAATCCTATATTGAAATAACA-AGAAGCACACGATATTATTCCAAATCTTGTACTCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28999663 82 - 170955103 CTTTTG--TGCTCTGCAACAGTTTATGTAATCCTATATTGAAATAACA-AGAAGCACACGATATTATTCCAAATCTTGTACTCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1977131 82 -   2996164 CTTTTG--TGCTCTGCAACAGTTTATGTAATCCTATATTGAAATAACA-AGAAGCACACGATATTATTCCAAATCTTGTACTCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1848810 82 -   2157725 CTTTTG--TGCTCTGCAACAGTTTATGTAACCCTATATTGAAATAACA-AGAAGCACACGATATTATTCCAAATCTTGTACTCAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28299104 82 -  71996105 CTTTTG--TGCTCTGCAACAGTTTATGTAACCCTATATTGGAATAACA-AGAAGCACACGATATTATTCCAAATCTTGTACTCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1977111 82 +   2316924 CTTTTG--TGCTCTGCAACAGTTTATGTAACCCTATATTGAAATAACA-AGAAGCACACGATATTATTCCAAATCTTGTACTCAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1857443 82 -   3067355 CTTTCG--TGCTCTGCAACAGTTTATGTAATCCTATATTGGAATAACA-AGAAGCACACGATATTATTCCAAATCTTGTACTCAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171385023 84 - 171630274 CTTTTTTATGCTCTACAACACTTTATGTAATCCTGTATTGGAATGACA-AGAAGCACGCAATATGATTCCAAAACTTGTCCTCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            212505 82 -    375362 CTTTTC--TGCTCTACCACAGTTGATGTAATCCTGTATTGGAATGACA-AGAAGCACGCAGTGTGATTCCAAATCTTGTCCTAGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      211057 82 -    373274 CTTTTA--TGCTCTTCAACAGTTTATGTAATCCTGTATTGGAATGACA-AGAAGCACGCAGTATGATTCCAAATCTTGTCTTCGT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      150142 82 -    285216 CTTTTA--TGCTCTACAACAGTTTATGTAATCCTGTATTGGAATGACA-AGAAGCACGCAATATGATTCCAAATCTTGTCCTTGT
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      938855 81 -   3516910 TTTTTG--TGCGCTGTAGCAGTTTATGTAATCCTGTATTGGAATGACA-GGAAGCACTC-ATATTATTCCAAATCTTGTGCTCAT
i proCoq1.NW_012147953v1   I 266 I 25
s otoGar3.GL873742           1523689 81 -   2232465 tttttg--ggctctgcaagagtttatataaTCCTGTATTGGAATGCCA-GAACTCACTC-ATATTCTTCCAAAACTTGTGGTCAT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             16902 73 -    302817 tttttg--ttctctgcaaaattttttataGTTCTCTGTTGGAAGAAAAGGGAAGCACACTAGTTATTTCCAAATT----------
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25872356 6664 +  26524999 I

a score=203613.000000
s hg38.chr6_GL000254v2_alt    146109 26 +   4827813 GCTAGTTCATATCCTATGCCACTCTG
s panTro5.chr6              29127241 26 + 175400573 GCTAGTTCATATCCTATGCCACTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29361585 26 + 173848474 GCTAGTTCATATCCTATGCCACTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5161788 26 +   6154872 GCTAGTTCATATCCTATGCCACTCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74163032 26 + 122973662 GCTAGTTCGTATCCTATGCCACTCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29339145 26 + 172585720 GCTAGTTTATTTTCCATGCCACTCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28999745 26 - 170955103 GCTAGTTTATTTTCCATGCCACTCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1977213 26 -   2996164 GCTAGTTTATTTTCCATGCCACTCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1848892 26 -   2157725 GCTAGTTCATTTTCCATGCCACTCTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28299186 26 -  71996105 GCTAGTTCATTTTCCATGCCACTCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1977193 26 +   2316924 GCTAGTTCATTTTCCATGCCACTCTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1857525 24 -   3067355 GCTAGTTCATTTTCCATGCCACTC--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171385107 25 - 171630274 GCTGGCTCATTTCCC-TGCCACTCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            212587 25 -    375362 GCTAGCTCATTTCCC-TGCCGCTTTG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      211139 25 -    373274 GCCAGCTCATTTCCC-TGCCACTCTG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      150224 25 -    285216 GCTAGCTCATTTCCC-TGCCTCTCTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1523770 25 -   2232465 TCTGGGACATCCCCCACTCCCTTCA-
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             16975 25 -    302817 GTTGGTTCATTCTGAGAATCCCTTG-
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      938936 25 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I

a score=144580.000000
s hg38.chr6_GL000254v2_alt    146135 23 +   4827813 TGGTCTCTTCCTCA-TCAATGTCC-
s panTro5.chr6              29127267 23 + 175400573 TGGTCTCTTCCTCA-TCAATGTCC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29361611 23 + 173848474 TGGTCTCTTCCTCA-TCAATGTCC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5161814 23 +   6154872 TGGTCTCTTCCTCA-TCAATGTCC-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74163058 23 + 122973662 TGGTCTCTTCCTCA-TCAATGTCC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29339171 17 + 172585720 TGGCGTCTTCCTCC-TCA-------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28999771 17 - 170955103 TGGCGTCTTCCTCC-TCA-------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1977239 17 -   2996164 TGGCGTCTTCCTCC-TCA-------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1848918 17 -   2157725 TGGCGTCTTCCTCC-TCA-------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28299212 17 -  71996105 TGGCGTCTTCCTCC-TCA-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1977219 17 +   2316924 TGGCGTCTTCCTCC-TCA-------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1857549 17 -   3067355 TGGCGTCTTCCTCC-TCA-------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171385132 18 - 171630274 TGGTCTCTTCCTCACCCC-------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            212612 17 -    375362 TGGCCTCTTTCTCA-TCA-------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      211164 17 -    373274 TGGTCTCTTTCTCA-TCA-------
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      150249 17 -    285216 TGGTCTCTTCCTCA-TCA-------
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      938961 23 -   3516910 TGGTCTCTTCCTCA-TCAATGTCC-
i proCoq1.NW_012147953v1   I 25 I 74
s otoGar3.GL873742           1523795 22 -   2232465 TGATCTCTTCC-CA-TCAATGTCC-
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             17000 18 -    302817 TAGTCTCTCCCTTG-TCC------A
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25872356 6664 +  26524999 I

a score=483807.000000
s hg38.chr6_GL000254v2_alt    146158 78 +   4827813 CTTCCTCATCGATGTCCCTGGGTTCCTGAG-------CAAAGCCTAAAGTAAGACACTCT-AAAAATTTTGACTGAAT-ATTCGGCA
s panTro5.chr6              29127290 78 + 175400573 CTTCCTCATCGATGTCCCTGGGTTCCTGAG-------CAAAGCCTAAAGTAAGACACTCT-AAAAATTTTGACTGAAT-ATTCGGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29361634 78 + 173848474 CTTCCTCATCGATGTCCCTGGGTTCCTGAG-------CAAAGCCTAAAGTAAGACACTCT-AAAAATTTTGACTGAAT-ATTCGGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5161837 78 +   6154872 CTTCCTCATCAATGTCCCTGGGTTCCTGAG-------CAAAGCCTAAAGTAAGACACTCT-AAAAATTTTGACTGAAT-ATTCGGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74163081 78 + 122973662 CTTCCTCATCAATGTCCCTGGGTTCCTGAG-------CAAAGCCTAAAGTAAGACACTCT-AAAAATTTTTACTGAAT-ATTCAGCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29339188 66 + 172585720 -----------GTGTCTCTGGGTTCCTGAG-------CAAAGCCCAAAGT-AGGCACTCT-AAAAATTTTGACTGAAT-ATTCGGCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28999788 66 - 170955103 -----------GTGTCTCCAGGTTCCTGAG-------CAAAGCCCAAAGT-AGGCACTCT-AAAAATTTTGACTGAAT-ATTCGGCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1977256 66 -   2996164 -----------GTGTCTCCGGGTTCCTGAG-------CAAAGCCCAAAGT-AGGCACTCT-AAAAATTTTGACTGAAT-ATTCGGCG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1848935 66 -   2157725 -----------GTGTCTCCGGGTTCCTGAG-------CAAAGCCCAAAGT-AGGCACTCT-AAAAATTTTGACTGAAT-ATTCGGCG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28299229 64 -  71996105 -----------GTGTCTCCGGGTTCCTGAG-------TAAAGCCCAAAGT-AGACA--CT-AAAAATTTTGACTGGAT-ATTCGGCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1977236 66 +   2316924 -----------GTGTCTCCGGATTCCTGAG-------CAAAGCCCAAAGT-AGGCACTCT-AAAAATTTTGACTGAAT-ATTCGGCG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1857566 66 -   3067355 -----------GTGTGTCCGGGTCCCTGAG-------CAAAGCCCAAAGT-AGGCACTCT-AAAAATTTTGACTGAAT-ATTCGGCG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171385150 52 - 171630274 -----------AAGTCCCTGGGCTCCTGAG-------CAAAGCCTAAAGT-AGACACTC---------------GAAT-ATTCAGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            212629 52 -    375362 -----------ACGTCCCTCGGCTCCTGAG-------CAAAGCTTAAAGC-AGACACTG---------------GAAT-ATTCAGAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      211181 52 -    373274 -----------ACGTCCCTGGGCTCCTGAG-------CAAAGCTTAAAGT-AGACACTC---------------GAAT-ATTCAGAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      150266 52 -    285216 -----------ACGTCCCTGGGCTCCTGAG-------CAAAGCCTAAAGT-AGACACTC---------------GAAT-ATTCAGAG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1523817 73 -   2232465 ----------ACAGTTCC---ATCCCTGAGTAGATGTCAAAGCCGAAAGT-ATTCACTCTAAAAAATGTCAACTGGACAATTTGGAG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             17018 55 -    302817 -------------GCCTCTGGGTTCC--AG-------------CCACAGC-AGGCACTCC-CAAAATGCTGACTGTGA-TTTCATG-
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      938984 74 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I

a score=726453.000000
s hg38.chr6_GL000254v2_alt    146236 63 +   4827813 ATAATTTGAGCTTGGTCTTAACCCC-AAAGAAAATACTATAGAAGAAAACACTAGGAAA--AAT---AG
s panTro5.chr6              29127368 63 + 175400573 ATAATTTGAGCTTGGTCTTAACCCC-AAAGAAAATACTGTAGAAGAAAACACTAGGAAA--AAT---AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29361712 63 + 173848474 ATAATTTGAGCTTGGCCTTAACCCC-AAAGAAAATACTGTAGAAGAAAACACTAGGAAA--AAT---AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5161915 63 +   6154872 ATAATTTGAGCTTGGTCTTAACCCC-AAAGAAAATACTATAGAAGAAAACACTAGGAAA--AAT---AG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74163159 63 + 122973662 ATAATTTAAGCTTGGTCTTAACCCC-AAAGAAAATACTATAGAAGAAAACACTAGGAAA--AAT---AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29339254 66 + 172585720 ATAATTTGAGCTTTGTTTTCACCCC-AAAGAAAATATTATAGAAGAAAACACTAGGAAA--AATAGGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28999854 66 - 170955103 ATAATTTGAGCTTTGTTTTCACCCC-AAAGAAAATATTATAGAAGAAAACACTAGGAAA--AATAGGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1977322 66 -   2996164 ATAATTTGAGCTTTGTTTTCACCCC-AAAGAAAATATTATAGAAGAAAACACTAGGAAA--AATAGGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1849001 66 -   2157725 ATAATTTGAGCTTTGTTTTCACCCC-AAAGAAAATATTATAGAAGAAAACACTAGGAAA--AATAGGAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28299293 63 -  71996105 ATAATTTGAGCTTTGTTTTCACCCC-AAAGAAAATACTATAGAAGAAAACACTAGGAAA--AAT---AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1977302 66 +   2316924 ATAATTTGAGCTTTGTTTTCACCCC-AAAGAAAATATTATAGAAGAAAACACTAGGAAA--AATAGGAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1857632 66 -   3067355 ATAATTTGAGCTTTGTTTTCACCCC-AAAGAAAATACTATAGAAGAAAACACTAGGAAA--AATAGGAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171385202 63 - 171630274 GTAACTCGAGCTTGGTCTTAACCCG-AAAGAAAAGACTATAGAAGAAAACAATATGAAA--AAC---AG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            212681 63 -    375362 ATAATTTTAACTTGGTCTTAACCCG-AAAGAAAATACTGTAGAAGAAAACAATGGGAAA--AAC---AG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      211233 63 -    373274 ATAATTTGAGCTTGGTCTTAACCCG-AAAGAAAATACTATAGAAGAAAACAATAGGAAA--AAC---AG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      150318 65 -    285216 ATAATTTGAGCTTGGTCTTAACCCG-AAAGAAAATACTACAGAAGAAAACAATAGGAAATCAAC---AG
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      939058 64 -   3516910 ATAATTTGAGCTTGGTCTTAACTCCAAAAGAAGAGACTACAGAAGAAAACACTGGGGAG--AAT---AG
i proCoq1.NW_012147953v1   I 74 I 160
s otoGar3.GL873742           1523890 64 -   2232465 ATAATTTGAACTTGGTCTTAACTCCAAAAGAAGAGATTTTTGAAGAAAACATTGGGGGA--AAT---AG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             17073 63 -    302817 AT-ATTGGAGTGTTGTCCTAATACAGAGTGAAAATATCACTGAAGAGAACACTGGGAGA--AGT---GG
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25872356 6664 +  26524999 I

a score=1508927.000000
s hg38.chr6_GL000254v2_alt    146299 149 +   4827813 ---AAGT-TGATGG----GATTCT--TTGTTG--ACGAGTGTAGTGTTCAGGAAGGGAGAG-----ATTTTGCTCGGATTTCATTGTGT----TAGAATAACATGTCATTTTCAAGGAACCAAAATCATACTGTGTAATGGACAGACCGGTGTTATAGTTCTACTTAAGG
s panTro5.chr6              29127431 151 + 175400573 ---AAGT-TGATGG----GATTCTCTTTGTTG--ACGAGTGTAGGGTTCAGGAAGGGAGAG-----ATTTTGCTCGGATTTCATTGTGT----TAGAATAACGTGTCATTTTCAAGGAACCAAAATCATACTGTGTAATGGACAGACCGGTGTTATAGTTCTACTTAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29361775 149 + 173848474 ---AAGT-TGATGG----GATTCT--CTGTTG--ACGAGTGTAGGGTTCAGGAAGGGAGAG-----ATTTTGCTCGGATTTCATTGTGT----TAGAATAACGTGTCATTTTCAAGGAACCAAAATCATACTGTGTAATGGACAGACCGGTGTTATAGTTCTACTTAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5161978 151 +   6154872 ---AAGT-TGATGG----GATTCTCTTTGTTG--AAGAGTGTAGGGTTCAGGAAGGGAGAG-----ATTTTGCTCGGATTTCATTGTGT----TAGAATAACATGTCATTTTCAAGGAACCAAAATCATACTGTGTAATGGACAGACCGGTGTTACAGTACTACTTAAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74163222 155 + 122973662 ---AAGT-TGATGGGAAAGATTCTCTTTGTTG--AAGAGTGTAGGGTTCAGGAAGGGAGAG-----ATTTTGCTTGGATTTCATTGTGT----TAGAATAACATGTCATTTTCAAGGAACCAAAATCATACTGTGTAATGGACAGACCGGTGTTATAGTTCTACTTAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29339320 161 + 172585720 ---AAGT-TGATGGGAAAGATTCTCTTTGTTGAAACGAGTGTAGGGTTCAGGAAGGGAGAA-----ATTTTGCTTTAATTTCATTGTGTTAGATAGAATAACATGTCATTTTGAAGGAACCAAAATTATACTGTGTATTGGACAGATTGGTGTTATAGTTCTACTTCAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              28999920 161 - 170955103 ---AAGT-TGATGGGAAAGATTCTCTTTGTTGAAACGAGTGTAGGGTTCAGGAAGGGAGAA-----ATTTTGCTTTAATTTCATTGTGTTAGATAGAATAACATGTCATTTTGAAGGAACCAAAATTATACTGTGTATTGGACAGATTGGTGTTATAGTTCTACTTCAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1977388 161 -   2996164 ---AAGT-TGATGGGAAAGATTCTCTTTGTTGAAACGAGTGTAGGGTTCAGGAAGGGAGAA-----ATTTTGCTTTAATTTCATTGTGTTAGATAGAATAACATGTCATTTTGAAGGAACCAAAATTATACTGTGTATTGGACAGATTGGTGTTATAGTTCTACTTCAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1849067 161 -   2157725 ---AAGT-TGATGGGAAAGATCCTCTTTGTTGAAACGAGTGTAGGGTTCAGGAAGGGAGAA-----ATTTTGCTTTGATTTCATTGTGTTAGATAGAATAACATGTCATTTTGAAGGAACCAAAATTATACTGTGTATTGGACAGATTGGTGTTATAGTTCTACTTCAGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28299356 157 -  71996105 ---AAGT-TGATAGGAAAGATTCTCTTTGTTGAAACGAGTGTAGGGTTCAGGAAGGGAGAA-----ATTTTGCTTTGATTTCATTGTCT----TAGAATAACATGTCATTCTGAAGGAACCAAAATTATACTGTGTATTGGACAGATTGGTGTTATAGTTCTACTTCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1977368 161 +   2316924 ---AAGT-TGATGGGAAAGATTCTCTTTGTTGAAACGAGTGTAGGGTTCAGGAAGGGAGAA-----ATTTTGCTTTGATTTCATTGTGTTAGATAGAATAACATGTCATTTTGAAGGAACCAAAATTATACTGTGTATTGGACAGATTGGTGTTATAGTTCTACTTCAGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1857698 157 -   3067355 ---AAGT-TGATGGGAAAGATTCTCTTTGTTGAAACGAGTGTAGGGTTCAGGAAGGGAGAA-----ATTTTGCTTTGATTTCATTGTGT----TAGAATAACATGTCATTTTGAAGGAACCAAAATTATACTGTGTATTGGACAGACTGGTGTTATAGTTCTACTTCAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171385265 152 - 171630274 ---AAGT-CGATGGGAAAGACTCTCTTTGTTG--AGGAGTGTAGGGTTCAGGAAGGGAGAA-----ATTTTGCTTTGATTTCACTGTGT----CAGAAAAG---GTCATTTTCAAGGAACCAGAATCATGCCGTGTAATGGACAGGCGAGTCTCACTGCTCTACTTCAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            212744 157 -    375362 ---AAGT-TGATGGGAAAGACTCTCTTTATCGAAAAGAGTGTAGGGTTCAGGAAGGGAGAG-----ATTTTGCTTTGATTTCATTGTGT----TAGAATAACACGTCATTTCCAAGGAACCAAAATCATGCCGTGTAATGGGCAGATCGGTCTCACTGCTCTACTTCAGG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      211296 153 -    373274 ---AAGT-TGATGG----GACTCTCTTTGTTGAAAAGAGTGTAGGGTTCAGGAAGGGAGAG-----ATTTTGCTTTGATTTCATTGTGT----CAGAATAACACGTCATTCTCAAGGAACCAAAATCATGCTGTGTAATGGACAGATCGGTCTTACCGCTCTACCTCAGG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      150383 154 -    285216 ---AAGT-TGATGGGAAAGATTCTCTTTGTTGAAAAGAGTGTAGGGTTCAGGAGGGGAGAA-----ATTTTGCTTTGATTTCCTTGTGT----TAGAATAA--GGTCATTTTCAAGGAACCAGAATCATGCCGTGTAATGGACAGATCGGTCTTTCTGCTCT-TTTCAGG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1523954 144 -   2232465 ----------------GAGTTGCTGTTTGTGAAAAAGAGTGTAGGGTTCCAGCGAGGAGA------ATTTTGCTTTGATTTCATTGTGTT---TAGAATAACTTGTCATTTTGAAGAAGCCAAAGCCATGGTGTA-AATGGATAGAAGGGTGTTGTCGCTTTACTTCTAG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             17136 164 -    302817 GAGAGGTCTGAGGGAAACACTTATCCTTG--AAAGCAGGTATGGGGTGCAAAAAAAAAAAAAAGATATATTGCTGTGTTTTTTTGTTGTT---TCAAATAACGTGCCATTTTCAAGCATCCAAAGCCATCGCATG-AGCTGACAGACGGTTGTTATTGCTTTACTTCTAG
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      939122 160 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I

a score=900794.000000
s hg38.chr6_GL000254v2_alt    146448  94 +   4827813 GTTGGACGTTTCACATCTTTCCTATCCC-----ATCCACA-------------------------------------------CTTTTGGTGACTGT-GG----GGTTCCCCCCA-------------AA----CACCCTATTGTTCTGTGC-----ATTAAT--------------------------------CCACAG-
s panTro5.chr6              29127582  94 + 175400573 GTTGGACGTTTCACATCTTTCCTATCCC-----ATCCACA-------------------------------------------CTTTTGGTGACTGT-GG----GGTTCCCCCCA-------------AA----CACCCTATTGTTCTGTGG-----ATTAAT--------------------------------CCACAG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29361924  93 + 173848474 GTTGGACGTTTCACATCTTTCCTATCCC-----ATCCACA-------------------------------------------CTTTTGGTGACTGT-GG----GGTTCCCCCCA-------------AA----CACCCTATTGTTCT-TGG-----ATTAAT--------------------------------CCACAG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5162129  94 +   6154872 GTCGGACGTTTCACATCTTTCCTATCCC-----ATCCACA-------------------------------------------CTTTTGGTGACTGT-GG----GGTTCCCCCCA-------------AA----CACCCTATTGTTCTGTGG-----ATTAAT--------------------------------CCACAG-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74163377  93 + 122973662 GTTGGACGTTTCACATCTTTCCTATCCC-----ATTCACA-------------------------------------------CTTTTGGTGACTGT-GG----GGTT-CCCCCA-------------AA----CACCCTATTGCTCTGTGG-----ATTAAT--------------------------------CCACAG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29339481  93 + 172585720 GTTGGACATTTCATATCTTTCCTATCCC-----ATCCACA-------------------------------------------CTTCTGGTGACTGT-GG----GGTT-CCCCCA-------------AA----CACGCTATTGCTCTGTGG-----ATTAAT--------------------------------CCACAG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29000081  93 - 170955103 GTTGGACGTTTCATATCTTTCCTATCCC-----ATCCACA-------------------------------------------CTTCTGGTGACTGT-GG----GGTT-CCCCCA-------------AA----CACGCTATTGCTCTGTGG-----ATTAAT--------------------------------CCACAG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1977549  93 -   2996164 GTTGGACGTTTCATATCTTTCCTATCCC-----ATCCACA-------------------------------------------CTTCTGGTGACTGT-GG----GGTT-CCCCCA-------------AA----CACGCTATTGCTCTGTGG-----ATTAAT--------------------------------CCACAG-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1849228  93 -   2157725 GTTGGACGTTTCATATCTTTCCTATCCC-----ATCCACA-------------------------------------------CTTCTGGTGACTGT-GG----GGTT-CCCCCA-------------AA----CACGCTATTGCTCTGTGG-----ATTAAT--------------------------------CCACAG-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28299513  93 -  71996105 GTTGGACGTTTCATATCTTTCCTATCCC-----ATCCACA-------------------------------------------CTTCTGGTGACTGT-GG----GGTT-CCCCCA-------------AA----CACGCTATTGCTCTGTGG-----ATTAAT--------------------------------CCACAG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1977529  93 +   2316924 GTTGGACGTTTCATATCTTTCCTATCCC-----ATCCACA-------------------------------------------CTTCTGGTGACTGT-GG----GGTT-CCCCCA-------------AA----CACGCTATTGCTCTGTGG-----ATTAAT--------------------------------CCACAG-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1857855  93 -   3067355 GTTGGAGGTCTCATATCTTTCCTATCCC-----ATCCACA-------------------------------------------CTTTTGGTGACTGT-GG----GGTT-CCCCCA-------------AA----CACGCTATTGCTCTGTGG-----ATTAAT--------------------------------CCACAG-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171385417  88 - 171630274 GCTGGACGTTTTACATCTTTCCTG-CCC-----ATCCACA-------------------------------------------CTTTTGGTGACTGT-GG----GTTT-CCCC---------------AA----CACCCCATTTCTC--TGG-----ATTAGC--------------------------------CCACAG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            212901  94 -    375362 GCTGGACG-TTTACATCTTTCCTACCCC-----ATCCACT-------------------------------------------CGTTTGGTGACTGT-GGGTTTGTTT-CCCC---------------AA----CCCCCTACCGCTCTGTGG-----ATTAGC--------------------------------CCACAG-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      211449  89 -    373274 GCTGGACCTTTCACATCTTTCCTACCCC-----ATCCACT-------------------------------------------CGTTTGGTGAC--T-GG----GTTT-CCCC---------------AA----CACCCTATCGCTCTGTGG-----ATTAGC--------------------------------CCACAG-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      150537  91 -    285216 GCTGGACGTTTCACATCTTTCCTACCCC-----ATCCACA-------------------------------------------CTTTTGGTGACTGC-GG----GTTT-CCCC---------------AA----CACCCTATTGCTCTGTGG-----ATTAGC--------------------------------CCACAG-
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      939282  94 -   3516910 GTTGGACATTTTACATCTTTATTATCCC-----ACCCACA-------------------------------------------CTTTTGGTGACTGTTGG----GTTC-TCCCCA-------------AA----AACCCTATTGCTCTATGG-----ACTAAC--------------------------------CCACAG-
i proCoq1.NW_012147953v1   I 160 I 26
s otoGar3.GL873742           1524098 188 -   2232465 AGTGGATGTTTCACCCTGTTGTTCTGCTGAGTAATACACAGTGACCTAGTAGGGATGTGTTCtttttttttttttttttttttttttttgagac----gg----agtc-tcactatgtcgcccctggtag----agtgctgtggcgttatagctcacagtaacttcaaactcttgggcttaagcgattctccttgcctcag-
i otoGar3.GL873742         C 0 I 21
s dasNov3.JH561790             17300  86 -    302817 ------TGT------TCTCTCCTGTCCC-----ACCTAGA-------------------------------------------CTTCTGATGACCTC-AG----AGTT-CTAGCA-------------AAGGACCCTTCTATGGCTTTGTGA-----ATTAAC--------------------------------TTACAAG
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25872356 6664 +  26524999 I

a score=151669.000000
s hg38.chr6_GL000254v2_alt    146542 18 +   4827813 CGAGC---------------------TGGTGACGCGTTT---
s panTro5.chr6              29127676 18 + 175400573 CGAGC---------------------TGGTGACGCGTTC---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29362017 18 + 173848474 CGAGC---------------------TGGTGACGCGTTC---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5162223 18 +   6154872 CGAGC---------------------TGGTGACGCGTTC---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74163470 18 + 122973662 CGAGC---------------------TGGTGACACAATC---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29339574 18 + 172585720 CGAGC---------------------TGGTGACGCGTTC---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29000174 18 - 170955103 CGAGC---------------------TGGTGACGCGTTC---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1977642 18 -   2996164 CGAGC---------------------TGGTGACGCGTTC---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1849321 18 -   2157725 CGAGC---------------------TGGTGACGCGTTC---
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28299606 18 -  71996105 CGAGT---------------------TGGTGACGCGTTC---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1977622 18 +   2316924 CGAGC---------------------TGGTGACGCGTTC---
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1857948 18 -   3067355 CGAGC---------------------TGGTGACGCGTTC---
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171385505 18 - 171630274 TCAGC---------------------TAGTGACGTGTTC---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            212995 18 -    375362 TCAGC---------------------TAGTGACATGTTT---
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      211538 18 -    373274 TCAGC---------------------TAGTGACATGTTC---
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      150628 18 -    285216 TCAGC---------------------TAGTGACATGTTC---
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1524307 39 -   2232465 caggcgcccgccacaacacccggctatAGGGATATATTC---
i otoGar3.GL873742         I 21 C 0
s dasNov3.JH561790             17386 21 -    302817 CAAGC---------------------TAGGGGGAAAATCTTC
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      939376 26 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I

a score=142122.000000
s hg38.chr6_GL000254v2_alt    146560 10 +   4827813 TTGTCAAGAC
s panTro5.chr6              29127694 10 + 175400573 TTGTCAAGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29362035 10 + 173848474 TTGTCAAGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5162241 10 +   6154872 TTGTCAAGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74163488 10 + 122973662 TTGTCAAGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29339592 10 + 172585720 TTGTCAAGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29000192 10 - 170955103 TTGTCAAGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1977660 10 -   2996164 TTGTCAAGAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1849339 10 -   2157725 TTGTCAAGAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28299624 10 -  71996105 TTGTCAAGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1977640 10 +   2316924 TTGTCAAGAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1857966 10 -   3067355 TTGTCAAGAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171385523 10 - 171630274 TTTTCAAGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            213013 10 -    375362 TTTTCAAGAC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      211556 10 -    373274 TTTTCAAGAC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      150646 10 -    285216 TTTTCAAGAC
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      939402 10 -   3516910 TTGTCAAGAC
i proCoq1.NW_012147953v1   I 26 C 0
s otoGar3.GL873742           1524346 10 -   2232465 TTGTCAAGAC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             17407 10 -    302817 CTGCCAAAAC
i dasNov3.JH561790         C 0 I 587
e canFam3.chr35             25872356 6664 +  26524999 I

a score=517649.000000
s hg38.chr6_GL000254v2_alt    146570 43 +   4827813 CA-AATCAAACTTGGGAAGTCTTCAAGTCAGGAATGG-AAGTCAC
s panTro5.chr6              29127704 43 + 175400573 CA-AATCAAACTTGGGAAGTCTTCAAGTCAGGAATGG-AAGTCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29362045 43 + 173848474 CA-AATCAAACTTGGGAAGTCTTCAAGTCAGGAATGG-AAGTCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5162251 43 +   6154872 CA-AGTCAAACTTGGGAAGTCTTCAAGTCAGGAATGG-AAGTCAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74163498 43 + 122973662 CA-AATCAAACTTGGGAATTCTTCAAGTCAAGAATGG-AAGTCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29339602 43 + 172585720 CA-AATCAAACTTGGGAAGTCTTCAAGTCAAGAATGG-AAGTCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29000202 43 - 170955103 CA-AATCAAACTTGGGAAGTCTTCAAGTCAAGAATGG-AAGTCAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1977670 43 -   2996164 CA-AATCAAACTTGGGAAGTCTTCAAGTCAAGAATGG-AAGTCAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1849349 43 -   2157725 CA-AATCAAACTTGGGAAGTTTTCAAGTCAAGAATGG-AAGTCAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28299634 43 -  71996105 CA-AATCAAACTTGGGAAGTCTTCAAGTCAAGAATGG-AAGTCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1977650 43 +   2316924 CA-AATCAAACTTGGGAAGTCTTCAAGTCAAGAATGG-AAGTCAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1857976 43 -   3067355 CA-AATCAAACTTGGGAAGTCTTCAAGTCAAGAATGG-AAATCAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171385533 42 - 171630274 CA-AATCAAAC-TGAGAAGTCTCCAAGTCAAGCATGG-ACGTCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            213023 43 -    375362 CA-AATCAAACTTGAGAAGTCTCCAAGTCAAGCATGG-ACGTCAC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      211566 43 -    373274 CA-AATCAAACTTGAGAAGTCTCCAAGTCAAGCATGG-ACGTCAC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      150656 43 -    285216 CA-AATCAAACTTGAGAAGTCTCCAAGTCAAGCATGG-ACGTCAC
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      939412 43 -   3516910 CA-GGTTAAACTTGGGAAGTCTCCAAGTCAAGCACGG-AAGTCAC
i proCoq1.NW_012147953v1   C 0 I 54
s otoGar3.GL873742           1524356 45 -   2232465 CAGGGTTAAACTTGGAAAGTCTTCGAGTGAGGCATGGAAAGTCAC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             17417 587 -    302817 I
e canFam3.chr35             25872356 6664 +  26524999 I

a score=114425.000000
s hg38.chr6_GL000254v2_alt    146613 12 +   4827813 TAAGCTCCATGT
s panTro5.chr6              29127747 12 + 175400573 TAAGCTCCATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29362088 12 + 173848474 TAAGCTCCATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5162294 12 +   6154872 TAAGCTCCATGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74163541 12 + 122973662 TAAGCTCCATGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29339645 12 + 172585720 CAAGCTCCATTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29000245 12 - 170955103 CAAGCTCCATTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1977713 12 -   2996164 CAAGCTCCATTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1849392 12 -   2157725 CAAGCTCCATTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28299677 12 -  71996105 CAAGCTCCATTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1977693 12 +   2316924 CAAGCTCCATTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1858019 12 -   3067355 CAAGCTCCATTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171385575 12 - 171630274 CAAGCTCCATGA
i calJac3.chr4             C 0 I 304
s saiBol1.JH378348            213066 12 -    375362 CAGGCTCCATGA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      211609 12 -    373274 CAAGCTCCACGA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      150699 12 -    285216 CAAGCGCCATGA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1524401 12 -   2232465 CAAGCTCCATGA
i otoGar3.GL873742         C 0 I 42
e dasNov3.JH561790             17417 587 -    302817 I
e proCoq1.NW_012147953v1      939455 54 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I

a score=99106.000000
s hg38.chr6_GL000254v2_alt    146625 8 +   4827813 AAATAAAC
s panTro5.chr6              29127759 8 + 175400573 AAATAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29362100 8 + 173848474 AAATAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5162306 8 +   6154872 AAATAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74163553 8 + 122973662 AAATAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29339657 8 + 172585720 AAATAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29000257 8 - 170955103 AAATAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1977725 8 -   2996164 AAATAAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1849404 8 -   2157725 AAATAAAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28299689 8 -  71996105 AAATAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1977705 8 +   2316924 AAATAAAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1858031 8 -   3067355 AAATAAAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171385891 8 - 171630274 aaataaaC
i calJac3.chr4             I 304 C 0
s saiBol1.JH378348            213078 8 -    375362 AAATAAGC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      211621 8 -    373274 AAATCAAC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      150711 8 -    285216 AAATAAAC
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      939509 8 -   3516910 AAATAAAT
i proCoq1.NW_012147953v1   I 54 C 0
s otoGar3.GL873742           1524455 8 -   2232465 AAGTAAGT
i otoGar3.GL873742         I 42 C 0
e dasNov3.JH561790             17417 587 -    302817 I
e canFam3.chr35             25872356 6664 +  26524999 I

a score=362997.000000
s hg38.chr6_GL000254v2_alt    146633 37 +   4827813 AGTATATGTGAACTGAATAACCTACTTTG-TTC--------------CG---GCC
s panTro5.chr6              29127767 37 + 175400573 AGTATATGTGAACTGAATAACCTACTTTG-TTC--------------CG---GCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29362108 37 + 173848474 AGTATATGTGAACTGAATAACCTACTTTG-TTC--------------CG---GCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5162314 37 +   6154872 AGTATATGTGAACTGAATAACCTACTTTG-TTC--------------CG---GCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74163561 37 + 122973662 AGTATATGTGAACTGAATAACCTACTTTG-TTC--------------CG---GCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29339665 37 + 172585720 AGTGTATGTGAACTGAATAACCTACTTTG-TTC--------------CG---GCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29000265 37 - 170955103 AGTGTATGTGAACTGAATAACCTACTTTG-TTC--------------CG---GCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1977733 37 -   2996164 AGTGTATGTGAACTGAATAACCTACTTTG-TTC--------------CG---GCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1849412 37 -   2157725 AGTGTATGTGAACTGAATAACCTACTTTG-TTC--------------CG---GCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28299697 37 -  71996105 AGTGTATGTGAACTGAATAACCTAGTTTG-TTC--------------CG---GCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1977713 37 +   2316924 AGTGTATGTGAACTGAATAACCTACTTTG-TTC--------------CG---GCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1858039 37 -   3067355 AGTATATGTGAACTGAATAACCTACTTTG-TTC--------------CG---GCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171385899 34 - 171630274 AGTCTCTGTGAACTGCGTACCCGGCTTTG-TTC--------------TG------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            213086 34 -    375362 AGTATCTGTGAACTGCACAACCCGCTTTG-TTC--------------TG------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      211629 37 -    373274 AGTGTATGTGAACTGCATAACCCGCTTGG-TTC--------------TGGCC---
i cebCap1.NW_016108108v1   C 0 I 210
s aotNan1.NW_018494050v1      150719 34 -    285216 AGCATATGTGAACTGCATAACCCGCTTTG-TTC--------------TG------
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      939517 37 -   3516910 AGTAAATGTAAAGTGAATAACCCACTTTT-TAG--------------TG---GCC
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1524463 50 -   2232465 AGTATGTGTAAC-TGAATAATCCACTTAT-GGGATTGATGTAAGGAATA---GCC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             18004 38 -    302817 AGTATAAATGAATTGAATAACCTACCTTATTTC--------------CG---GTC
i dasNov3.JH561790         I 587 C 0
e canFam3.chr35             25872356 6664 +  26524999 I

a score=795492.000000
s hg38.chr6_GL000254v2_alt    146670  89 +   4827813 TT-ACGCCA------------------ACCCTGCACTTCCAACAGAACCATCTTTGAAGTTTCCTGGCCATCACTGC------CCCGCTTCCAGCGTC----------GCCATCATTCCTTTCA
s panTro5.chr6              29127804  89 + 175400573 TT-ACGCCA------------------ACCCTGCACTTCCAACAGAACCATCTTTGAAGTTTCCTGGCCATCACTGC------CCCGCTTCCAGCGTC----------GCCATCATTCCTTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29362145  89 + 173848474 TT-ACGCCA------------------ACCCTGCACTTCCAACAGAACCATCTTTGAAGTTTCCTGGCCATCACTGC------CCCGCTTCCAGCGTC----------GCCATCATTCCTTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5162351  89 +   6154872 TT-ACGCCA------------------ACCCTGCACTTCCAACAGAACCATCTTTGAAGTTTCCTGGCCATCACTGA------CCCGCCTCCAGCGTC----------GCCATCATTCCTTTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74163598  89 + 122973662 TT-ACGCCA------------------ACCCTGCACTTCCAACAGAACCATCTTCGAAGCTTCCTGGCCATCACTGC------CTCGCCTCCAGCGTC----------GCCATCATTCCTTTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29339702  89 + 172585720 TT-ACGCCA------------------ACCCTGCACTTCCAACAGAACCATCTTCGAAGCTTCCTGGCCATCACTGC------CCCGCCTCCAACGTC----------GCCATCATTCCTTTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29000302  89 - 170955103 TT-ACGCCA------------------ACCCTGCACTTCCAACAGAACCATCTTCGAAGCTTCCTGGCCATCACTGC------CCCGCCTCCAACGTC----------GCCATCATTCCTTTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1977770  89 -   2996164 TT-ACGCCA------------------ACCCTGCACTTCCAACAGAACCATCTTGGAAGCTTCCTGGCCATCACTGC------CCCGCCTCCAACGTC----------GCCATCATTCCTTTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1849449  89 -   2157725 TT-ACGCCA------------------ACCCTGCACTTCCAACAGAACCATCTTCGAAGCTTCCTGGCCATCACTGC------CCCGCCTCCAACGTC----------GCCATCATTCCTTTCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28299734  89 -  71996105 TT-ACGCCA------------------ACCCTGCACTTCCAACAGAACCATCTTCGAAGCTTCCTGGCCATCACTGC------CCCGCCTCCAACGTC----------GCCATCATTCCTTTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1977750  89 +   2316924 TT-ACGCCA------------------ACCCTGCACTTCCAGCAGAACCATCTTCGAAGCTTCCTGGCCATCACTGC------CCCGCCTCCAACGTC----------GCCATCATTCCTTTCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1858076  90 -   3067355 TTAACGCCA------------------ACCCTGCACTTCCAACAGAACCATCTTCGAAGCTTCCTGGCCATCACTGC------CCCGCCTCCAACGTC----------GCCATCATTCCTTTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171385933  84 - 171630274 -----GGCA------------------ACCCTGCACTTCCAGCAGAACCTTCTTCCTCGCTTCTAGGCGCTCGCTG-------CCCTCCTCCAGCGTC----------GCCATCACCCCTTTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            213120  76 -    375362 -----GTCA------------------ACCGCGCGCTTCCAGCAGAACCTTCTTCCCCGCGTTCAGGCGCTCCCTG-------CCCGCGTCCCGCGTC----------GCCA--------CTCT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      150753  83 -    285216 -----GCCA------------------ACCCTGCACTCCCAGCAGAACCTTCTTCCACGCTTCCAGG-GCTCACTG-------CCCGCCTCCAGCGTC----------GCCATCACCCCTTTCA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      939554  89 -   3516910 TT-ACATCA------------------GCCTTACACTTCCAAAAGAACCCTCTTTGAAGCTTTCTGGTCACTATTGC------CCAGCCTCCAGCAGC----------GCCCTTATTCCTTTCA
i proCoq1.NW_012147953v1   C 0 I 194
s otoGar3.GL873742           1524513  81 -   2232465 TT-ACATCAATCTTGCACTTCCTGCATATCTTGCACTTCCTGCATAACCTTCTTTGAAGCTTCCTGGCAA------------------------------------------TCATTCCTTTCA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             18042 104 -    302817 TT-AAGGCA------------------ACCTTGCCCTTTCTGCAGCGCGTTCTTTGATGCTTCCAAACCTTTACTGCCTCCCTCCTGCATCCActgtccagcctcctgtccagcctcctTTTC-
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25872356 6664 +  26524999 I
e cebCap1.NW_016108108v1      211666 210 -    373274 I

a score=1088366.000000
s hg38.chr6_GL000254v2_alt    146759 151 +   4827813 CACACCCCACTTGCCGAAAGTACGTTCTGTGCGCTCTCTCACCCTCCTCTTGATTGTTTTCCCTAAGGGGTGCAGCATCAGTTCAGAACTGAAAA----TCTCCCTATCCCACTTCTCGAAGCCATTAATCAGAGATTTCAACAGGGTTCACCGC
s panTro5.chr6              29127893 151 + 175400573 CACACCCCACTTGCCGAAAGTACGTTCTGTGCGCTCTCTCACCCTCCTCTTGATTGTTTTCCCTAAGGGGTGCAGCATCAGTTCAGAACTGAAAA----TCTCCCTATCCCACTTCTCGAAGCCATTGATCAGAGATTTCAACAGGGTTCACCGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29362234 151 + 173848474 CACACCCCACTTGCCGAAAGTACGTTCTGTGCGCTCTCTCACCCTCCTCTTGATTGTTTTCCCTAAGGGGTGCAGCATCAGTTCAGAACTGAAAA----TCTCCCTATCCCACTTCTCGAAGCCATTGATCAGAGATTTCAACAGGGTTCACCGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5162440 151 +   6154872 CACACCCCACTTGCCGAAAGTACGTTCTGTGCGCTCTCTCACCCTCCTCTTGATTGTTTTCCCTAAGGGGTGCAGCATCAGTTCAGAACTGACAA----TCTCCCTATCCCACTTCTCGAAGCCATTTATCAGAGATTTCAACAGGGTTCACCGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74163687 150 + 122973662 CGCCCCCTACTTCCCAAAAGTACGTTCTGTGCGCTATCTCACCCTCCTCTTGATTGTTTTCCTTAAGGGGTGCAGCATCAGTTCAGAACTGAAAA----TCTCCCTATCCCACTTCTCAAAGCCATTAATCAGAGATTTCAGCAGGGTTCA-CGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29339791 146 + 172585720 CACCCCCCACTTCCCGAAAGTGCCTTCTGTGCGCTCTCTCAACCTCCTCTTGATTGTTTCCCCTATGGGTTGCAGCATCAATTCAGAACTGAAAA----TCTCCCTATCCCACATCTCGAAGTCATTAA----AGATTTCAACAGGTTTCA-CAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29000391 146 - 170955103 CACCCCCCACTTCCCGAAAGTGCCTTCTGTGCGCTCTCTCAACCTCCTCTTGATTGTTTCCCCTATGGGTTGCAGCATCAATTCAGAACTGAAAA----TCTCCCTATCCCACATCTCGAAGTCATTAA----AGATTTCAACAGGTTTCA-CAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1977859 146 -   2996164 CACCCCCCACTTCCCGAAAGTGCCTTCTGTGCGCTCTCTCAACCTCCTCTTGATTGTTTCCCCTATGGGTTGCAGCATCAATTCAGAACTGAAAA----TCTCCCTATCCCACATCTCGAAGTCATTAA----AGATTTCAACAGGGTTCA-CAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1849538 146 -   2157725 CACCCCCCACTTCCCGAAAGTGCCTTCTGTGCGCTCTCTCAACCTCCTCTTGATTGTTTCCCCTATGGGTTGCAGCATCAATTCAGAACTGAAAA----TCTCCCTATCCCACATCTCGAAGTCATTAA----AGATTTCAACAGGGTTCA-CAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28299823 146 -  71996105 CACCCCCCACTTCCCGAAAGTGCCTTCTGTGCGCTCTCTCAACCTCCTCTTGATTGTTTCCCCTATGGGTTGCAGCATCAGTTCAGAACTGAAAA----TCTCCCTATCCCACATCTCGGAGTCATTAA----AGATTTCAACAGGGTTCA-CAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1977839 146 +   2316924 CACCCCCCACTTCCCGAAAGTGCCTTCTGTGCGCTCTCTCAACCTCCTCTTGATTGTTTCCCCTGTGGGTTGCAGCATCAATTCAGAACTGAAAA----TCTCCCTATCCCACATCTCGAAGTCATTAA----AGATTTCAACAGGGTTCA-CAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1858166 146 -   3067355 CACCCCCCACTTCCCGAAAGTGCCTTCCGTGCGCTCTCTCAACCTCCTCTTGATTGTTTCCCCTATGGGTTGCAGCATCAGTTCAGAACTGAAAA----TCTCCCTATCCCACATCTCGAAGTCATTAA----AGATTTCAACAGGATTCA-CAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171386017 136 - 171630274 CAGCCCCCGCTCCCCGAAAGCAGCTTCTGTGCGC--TCTCAGCCTCCTC----TTGTTTTCATTATGGGCTGCAGTATCAGTTCAGGGCTGAAAA----TCTCCGCGTCCCACTTCTCCAAGTCATTAATCGTCCATTTC--------TCA-CAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            213196 134 -    375362 CAGCCCCGACTCCCC-AGAGCAGCTTCTGTGCGC--TCTCTGCCTCCTC----TTGTTTCC-CCATGGGCTGCACTGTCAGTTCAGGGCTGAAAA----TCTCCGCGCCCCACTTCTCCAAGTCATTCATCGTCCGCTTG--------TCA-CTT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      150836 136 -    285216 CAGCCCCCACTCCCCGAAAGCAGCTTCTGTGCGC--TCTCAGCCCCCTC----TTGTTTTCCCTGTGGGCTGCAGTATCCGTTCAGGGCTGAAAA----TCTCCGCATCCCACTTCTCCGAGTCAGTCATCGTCCATTTC--------TCA-CAT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1524594 104 -   2232465 -GACATCCACCCTCCAAAAGTACCATCTGTGTGCACTATCTTCTTCCTCTTGGTTGCTTTCGCTACAAGTTGGAGCATCTGCTCTGGGCTGAAAA----TCTTCCTACT----------------------------------------------
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             18146 138 -    302817 --TGAGCCCCTCTCGGAATGCACCATCTGCACATGCTCTC----TCCACCTTGCTGTTATCCATATGGGATGCGGCATCAGCTTCCAGCTTAAAGCCTTCCTCCCCATCACATTCCTCAAAGTCATTGATGAAAGACTTCA-----------CAT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      939643 194 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I
e cebCap1.NW_016108108v1      211666 210 -    373274 I

a score=531614.000000
s hg38.chr6_GL000254v2_alt    146910 50 +   4827813 TGATGACCCATCTAACTGCTCGTCCTCTCACAGTTTCTGACAACTGTGTA
s panTro5.chr6              29128044 50 + 175400573 TGATGACCAATCTAACTGCTCGTCCTCTCACAGTTTCTGACAACTGTGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29362385 50 + 173848474 TGATGACCAATCTAACTGCTCGTCCTCTCACAGTTTCTGACAACTGTGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5162591 48 +   6154872 TGATGACCCATCTAACTGCTCGTCCTCT--CAGTTTCTGACAACTGCGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74163837 50 + 122973662 TGATGACCCATCTAACTGCTCGTCCTCTCACAGTTTCTGACAACTGTGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29339937 50 + 172585720 TGATGACCCATCTAACTGCTCGTCCTCTCACAGTTTTTGACAATTGTGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29000537 48 - 170955103 TGATGACCCATCTAACTGCTCGTCCTCT--CAGTTTTTGACAACTGTGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1978005 50 -   2996164 TGATGACCCATCTAACTGCTCGTCCTCTCACAGTTTTTGACAACTGTGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1849684 50 -   2157725 TGATGACCCTTCTAACTGCTCGTCCTTTCACAGTTTCTGACAACTGTGTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28299969 50 -  71996105 TGATGACCCATCTAACTGCTCGTCCTCTCACAGTTTCTGACAACTGTGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1977985 50 +   2316924 TGATGACCCACCTAACTGCTCGTCCTCTCACAGTTTCTGACAACTGTGTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1858312 50 -   3067355 TGATGACCCATCTAACTGCTAGTCCTCTCACAGTTTCTGACAACTGTGTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171386153 48 - 171630274 TGATGACCCATCTAACTGCTCGTCCTCTCT--GTTTCTGACAACTGTGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            213330 50 -    375362 TGATGCCCGATCTAACTGCTCGTCCTCTCTCAGTTTCTGACAACTGCGCA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      211876 48 -    373274 TGATGACCCATCTAACTGCTCGTCCTCTCA--GTTTCTGACAACTGTGTA
i cebCap1.NW_016108108v1   I 210 C 0
s aotNan1.NW_018494050v1      150972 50 -    285216 TGATGACCCATCTAACTGTTCGTCCTCTCTCAGTTTCTGACAACTGTGTA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1524698 32 -   2232465 ----------------TACCCGACGTCTTACCGTTTCCGACAAGTGTA--
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             18284 50 -    302817 GAATGAGCCATCTAACTGCCCATCCTCTAACTCTTCCTGACACCCAGGTA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      939643 194 -   3516910 I
e canFam3.chr35             25872356 6664 +  26524999 I

a score=730144.000000
s hg38.chr6_GL000254v2_alt    146960 58 +   4827813 TT-AGTATTTGCAAGTTTT----GGAAGGTGTTGTAAATAGTTTTTA--ACTGTTAGTGAATTTT
s panTro5.chr6              29128094 58 + 175400573 TT-AGTATTTGCAAGTTTT----GGAAGGTGTTGTAAATAGTTTTTA--ACTGTTAGTGAATTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29362435 58 + 173848474 TT-AGTATTTGCAAGTTTT----GGAAGGTATTGTAAATAGTTTTTA--ACTGTTAGTGAATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5162639 58 +   6154872 TT-AGTATTTGCAAGTTTT----AGAAGGTGTTGTAAATAGTTTTTA--ACTGTTAGTGAATTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74163887 58 + 122973662 TT-AGTTTTTTCAAGTTTT----AGAGGGTGTTGTAAATAGTTTTTA--ACTGTTAGTGAATTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29339987 58 + 172585720 TT-CGTTTTTGCAAGTTTT----AGAGGGTGTTGTAAATAGTTTTTA--GCTGTTAGTGAATTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29000585 58 - 170955103 TT-CGTTTTTGCAAGTTTT----AGAGGGTGTTGTAAATAGTTTTTA--GCTGTTAGTGAATTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1978055 58 -   2996164 TT-CGTTTTTGCAAGTTTT----AGAGGGTGTTGTAAATAGTTTTTA--GCTGTTAGTGAATTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1849734 58 -   2157725 TT-CGTTTTTGCAAGTTTT----AGAGGGTGTTGTAAATAGTTTTTA--GCTGTTAGTGAATTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28300019 58 -  71996105 TT-CGTTTTTGCAAGTTTT----AGAGGGTGTTGTAAATAGTTTTTA--GCTGTTAGTGAATTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1978035 58 +   2316924 TT-CGTTTTTGCAAGTTTT----AGAGGGTGTTGTAAATAGTTTTTA--GCTGTTACTGAATTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1858362 58 -   3067355 TT-AGTTTTTGCAAGTTTT----AGAGGGTGTTGTAAATAGTTTTTA--GCTGTTAGTGAATTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171386201 59 - 171630274 TTCCGTCTTTGCAAGTTTT----CGAGGGTACTGTAAATAGTTTTTA--GTTGTTAGTGATTTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            213380 62 -    375362 TT-CGTTTTTGCAAGTTTTCTTGCAAGGGTTCTGTAAATGGTTTTTA--GCTGTTAGTGATTTTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      211924 58 -    373274 TT-CGTTTTTGCAAGTTTT----CGAGGGTACTGTAAATAGTTTTTA--GCTGTTAGTGATTTTT
i cebCap1.NW_016108108v1   C 0 I 322
s aotNan1.NW_018494050v1      151022 58 -    285216 TT-CGTTTTTGCAAGTTTT----CGAGGGTACTGTAAATAGTTTTTA--GCTGTTAGTGATTTTT
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      939837 58 -   3516910 TT-AGTTTTTGCAAATTTT----AGAGGACGCTGTAAACAGTTTTTA--ACTGTTAGTGAATTTT
i proCoq1.NW_012147953v1   I 194 C 0
s otoGar3.GL873742           1524730 60 -   2232465 TT-AGTTTGTGCAAATTTT----AGAGGGTGCTGTAAATAGTTTTTATTAATAATAGCGAATTTC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             18334 58 -    302817 TT-AGTTTTTGCAATTTTC----AGAGAGTGCTGTAAATAATTGTCA--AGTGTTAATGAATCTT
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25872356 6664 +  26524999 I

a score=55221.000000
s hg38.chr6_GL000254v2_alt    147018 5 +   4827813 AATTT
s panTro5.chr6              29128152 5 + 175400573 AATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29362493 5 + 173848474 AATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5162697 5 +   6154872 AATTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74163945 5 + 122973662 AATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29340045 5 + 172585720 AATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29000643 5 - 170955103 AATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1978113 5 -   2996164 AATTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1849792 5 -   2157725 AATTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28300077 5 -  71996105 AATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1978093 5 +   2316924 AATTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1858420 5 -   3067355 AATTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171386260 5 - 171630274 AACTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            213442 5 -    375362 AACTT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      151080 5 -    285216 AACTT
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      939895 5 -   3516910 AACTT
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1524790 4 -   2232465 -CTTT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             18392 5 -    302817 AATCT
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25872356 6664 +  26524999 I
e cebCap1.NW_016108108v1      211982 322 -    373274 I

a score=1114273.000000
s hg38.chr6_GL000254v2_alt    147023 106 +   4827813 CAAACGAGGAAC-TTTTTATTAAGCTGGATCTTTGAAGTCAGCACTTAAAAAGCCCCCT-TCCCCACCATGTTACATTCCCTTTGTGTGCTATATAAGCATCT----GTCTT
s panTro5.chr6              29128157 106 + 175400573 CAAACGAGGAAG-TTTTTATTAAGCTGGATCTTTGAAGTCAGCGCTTAAAAAGCCCCCT-TCCCCACGATGTTACATTCCCTTTCTGTGCTATGTAAGCAACA----CTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29362498 106 + 173848474 CAAACGAGGAAG-TTTTTATTAAGCTGGATCTTTGAAGTCAGCGCTTAAAAAGCCCCCT-TCCCCACCATGTTACATTCCCTTTGTGTGCTATGTAAGCAACG----TTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5162702 106 +   6154872 CAAACGAGGAAC-TTTTTATTAAACCGGATCTTTGAAGTCAGCACTTAAAAAGCCCCCT-TCCCCACCATGTTACATTCCCTTTGTGTGCTATGTAAGCATTT----CCTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74163950 106 + 122973662 CAAACGAGGAAC-TTTTTATTAAGCTGGATCTTTGAAGTCAGCGCTTAAAAAGCTCCCT-TCCCCACCATGTTACATTCCCTTTGTGCCCTATGTAAGAACCC----CTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29340050 106 + 172585720 CAAACGAGGAAC-TTTTTATTAAGCTGGATCTTTGAAGTCAGCGCTTGAAAAGCCCCCT-TCCCCACCATGTTACATTCTCTTTGTGTCTTATGTAAGTAACT----GTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29000648 106 - 170955103 CAAACGAGGAAC-TTTTTATTAAGCTGGATCTTTGAAGTCAGCGCTTGAAAAGCCCCCT-TCCCCACCATGTTACATTCTCTTTGTGTCTTATGTAAGTAACT----GTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1978118 106 -   2996164 CAAACGAGGAAC-TTTTTATTAAGCTGGATCTTTGAAGTCAGCACTTGAAAAGCCCCCT-TCCCCACCATGTTACATTCTCTTTCTGTCTTATGTAAGTGGCC----GTCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1849797 102 -   2157725 CAAAC---GAAC-TTTTTATTAAGCTGGATCTTTGAAGTCAGCGCTTGAAAC-CCCCCT-TCCCCACCATGTTACATTCTCTTTGTGTCTTATGTAAGTAACT----GTGTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28300082 106 -  71996105 CAAACGAGGAAC-TTTTTATTAAGCTGGATCTTTGAAGTCAGCGCTTGAAAAGCCCGCT-TCCCCACCATGTTACATTCTCTTTGTGCCTTATGTAAGTAAGT----GTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1978098 106 +   2316924 CAAACGAGGAAC-TTTTTATTAAGCTGGATCTTTGAAGTCAGCGCTTGAAAAGCCCCGT-TCCCCACCATGTTACATTCTCTTTGGGTCTTATGTAAGTAACT----GTCTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1858425 106 -   3067355 CAAACGAGGAAC-TTTTTATTAAGCTGGATCTCTGAAGTCAGCGCTTAAAAAGCCCCCT-GCCCCACTACGTTACATTCTCTTTGTGTCTTATGTAAGCAACC----GTCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171386265 107 - 171630274 CAAACGAGGAACTTTTTTATTAAGCTGGACCTTTGAAGTCAGTGCTTAAAAAGCCCCCT-TCCCCACCTTGTTACATTCCCTTTGGGTCTTATGTAAGAAACC----CTCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            213447 105 -    375362 CAAACGAGGAAC-TTTTTATGAAGCTGGCCCTTTGAAGTCAGCGCTTCAAAAG-CCCCT-TCCCCACCAGGTGACATTCCCTGTGTGCCTTATGGAAGAAGCC----CGCCA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      212304 105 -    373274 CAAACGAGGAAC-TTTTTATGAAGCTGGCCCTTTGAAGTCAGCGCTTCGCAAG-CCCCT-TCCCCACCATGTTACATTCCCTTTGTGTCTTATGTAACAAGGC----CGCTT
i cebCap1.NW_016108108v1   I 322 C 0
s aotNan1.NW_018494050v1      151085 106 -    285216 CAAACGAGGAAC-TTTTTACTAAGCTGCACCTTTGAAGTCAGCGCTTAAAAAGCCCCCT-TCCCCACCATGTTACATTCTCTTTGTGTATTATGTAATAAGCC----CTCTC
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      939900  94 -   3516910 TAAACGAGGAAC-TTTTTATT-------------AAAATCAACGTTAAAAAAGCTTCCTGTCCCCACCTCGCTACATTCCCTTTGTGCCTTACGTGATAAAAC----GCTTT
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1524794 106 -   2232465 CAAACGAAGAAC-TGTTAATTAAGCTGGATTTTGAAAATCAGCTTTAGAAAATACCCCT-CCCCCACCTCGCCACATTTCCTTTGTGTCTTACGTGATAAAAT----CTCTT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             18397 109 -    302817 CAAACGAAGAAC-TCTTCGTTTAACTGGATCTTTGGGACTAGTGATAGAAGA-CCCACG-AACCCTCCTTGTTAGATTGCTTTTGTATTTCATGTGGCTACCCACAGGCCCT
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25872356 6664 +  26524999 I

a score=1400119.000000
s hg38.chr6_GL000254v2_alt    147129 83 +   4827813 CGGCGGTTggccgcgtggcctaatggataaggcgtctgattccggatcagaagattgagggttcgagtcccttcgtggtcgtc
s panTro5.chr6              29128263 83 + 175400573 CGGCGGTTggccgcgtggcctaatggataaggcgtctgattccggatcagaagattgagggttcgagtcccttcgtggtcgtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29362604 83 + 173848474 CGGCGGTTggccgcgtggcctaatggataaggcgtctgattccggatcagaagattgagggttcgagtcccttcgtggtcgtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5162808 83 +   6154872 CGGCGGTTggccgcgtggcctaatggataaggcgtctgattccggatcagaagattgagggttcgagtcccttcgtggtcgtc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74164056 83 + 122973662 CGGCGGTTggccgcgtggcctaatggataaggcgtctgattccggatcagaagattgagggttcgagtcccttcgtggtcgtc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29340156 83 + 172585720 CGGCGGTTggccgcgtggcctaatggataaggcgtctgattccggatcagaagattgagggttcgagtcccttcgtggtcgtc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29000754 83 - 170955103 CGGCGGTTggccgcgtggcctaatggataaggcgtctgattccggatcagaagattgagggttcgagtcccttcgtggtcgtc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1978224 83 -   2996164 CGGCGGTTggccgcgtggcctaatggataaggcgtctgattccggatcagaagattgagggttcgagtcccttcgtggtcgtc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1849899 83 -   2157725 CGGCGGTTggccgcgtggcctaatggataaggcgtctgattccggatcagaagattgagggttcgagtcccttcgtggtcgtc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28300188 83 -  71996105 CGGCGGTTggccgcgtggcctaatggataaggcgtctgattccggatcagaagattgagggttcgagtcccttcgtggtcgtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1978204 83 +   2316924 CTGCGGTTggccgcgtggcctaatggataaggcgtctgattccggatcagaagattgagggttcgagtcccttcgtggtcgtc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1858531 83 -   3067355 CGGCGGTTggccgcgtggcctaatggataaggcgtctgattccggatcagaagattgagggttcgagtcccttcgtggtcgtc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171386372 83 - 171630274 TAGCAGTTggccgcgtggcctaatggataaggcgtctgattccggatcagaagattgagggttcgagtcccttcgtggtcgtc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            213552 83 -    375362 TAGCAGTTggccgcgtggcctaatggataaggcgtctgattccggatcagaagattgagggttcgagtcccttcgtggtcgtc
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      212409 83 -    373274 CGGCAGTTggccgcgtggcctaatggataaggcgtctgattccggatcagaagattgagggttcgagtcccttcgtggtcgtc
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      151191 83 -    285216 TCGCAGTCggccgcgtggcctaatggataaggcgtctgattccggatcagaagattgagggttcgagtcccttcgtggtcgtc
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      939994 83 -   3516910 CATCGGTTggccgcgtggcctaatggataaggcgtctgattccggatcagaagattgagggttcgagtcccttcgtggtcgtc
i proCoq1.NW_012147953v1   C 0 I 510
s otoGar3.GL873742           1524900 83 -   2232465 TGCCGGTTggccgcgtggcctaatggataaggcgtctgattccggatcagaagattgagggttcgagtcccttcgtggtcgtc
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25879020 83 +  26524999 CGCTAGCCggccgcgtggcctaatggataaggcgtctgattccggatcagaagattgagggttcgagtcccttcgtggtcgcT
i canFam3.chr35            I 6664 C 0
s dasNov3.JH561790             18506 80 -    302817 ---CAGCCAgtcacgtggcctcctggataaagtatctgacgctgggccaggagattgagggtttgggtccctttgtggtcATT
i dasNov3.JH561790         C 0 C 0

a score=2983551.000000
s hg38.chr6_GL000254v2_alt    147212 305 +   4827813 GTTTTGCGTTCTCTGGTTC-----------------------GAAAGATATTTGT--TGATTCAGAGCA--TTTTCCCTT---TTCTTGCTCCGGTCTGGCTGCCAATTAACAACTAAAGGTAGAAGTCttatttaacgagtat-------------atacggtgtgcctgccctgtgacaactgcttt-ataaaagaacaaagcagaaata-gcacttggcctcaaagagcttactttctactggaTCTAACAGTTGAAATCAAGCAAACGCT--GGGAAG------AAAAAAAAAA------------------------TTGTTTCCACTCCTGTGAAAAAAAGAAGTACGAGGATAAAATAAAAAAATAAGGGATGGG
s panTro5.chr6              29128346 307 + 175400573 aTTTTGCGTTCTCTGGTTC-----------------------GAAAGATATTTGT--TGATTCAGAGCA--TTTTCCCTT---TTCTTGCTCCGGTCTGGCTGCCAATTAACAACTAAAGGTAGAAGTCttatttaacgagtat-------------atacggtgtgcctgccctgtgacagctgcttt-ataaaagaacaaagcagaaata-gcacttggcctcaaagagcttactttctactggaCCTAACAGTTGAAATCAAGCAAACGCT--GGGAAG------AAAAAAAAAA-------------------AA---TTGTTTCCACTCCTGTGAAAAAAATAAGTACGAGGATAAAATAAAAAAATAAGGGATGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29362687 305 + 173848474 GTTTTGCGTTCTCTGGTTC-----------------------GAAAGATATTTGT--TGATTCAGAGCA--TTTTCCCTT---TTCTTGCTCCGGTCTGGCTGCCAATTAACAACTAAAGGTAGAAGTCttatttaacgagtat-------------atacggtgtgcctgccctgtgacagctgcttt-ataaaagaacaaagcagaaata-gcacttggcctcaaagagcttactttctactggaCCTAACAGTTGAAATCAAGCAAACGCT--GGGAAG------AAAAAAAAAA------------------------TTGTTTCCACTCCTGTGAAAAAAATAAGTACGAGGATAAAATAAAAAAATAAGGGATGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5162891 305 +   6154872 GTTTTGCGTTCTCTGCTTC-----------------------GAAAGATATTTGT--TGATTCAGAGCA--TTTTCCCTT---TTCTTGCACCGGTCTGGCTGCCAATTAACAACTAAAGGTAGAAGTCttatttaacgagtat-------------atacggtgtgcctgccctgtgacaactgcttt-ataaaagaacaaagcagaaata-gcacttggcctcaaagagcttactttctactggaCCTAACAGTTGAAATCAAGCAAACGCT--GGGAAG------AAAAAAAAAA------------------------TTGTTTCCACTCCTGTGAAAAAAATAAGTACGAGGATAAAATAAAAAAATAAGGGATGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74164139 309 + 122973662 GTTTTTCATTCTCTGGTTT-----------------------GAATGATATTTAT--TGATTCAGAGCA--TTTTCCCTT---TTCTTGCTCCGGTCTGGCTGCCAATTAACAACTAAAGGTAGAAGTCttatttaacgagtat-------------atatggcatgcctgccctgtgacaactgcttt-ataaaagaacaaagcagaaata-gcacttggcctcaaagagcttactttctactggaCCTAACAGTTGAAATCAAGCAAACGCT--GGGAAG------AAAAAAAAAA-------------------AAAACTTGTTTCCACTCCTGTGAAAGAAATAAGTAAGAGGATAAAAT-AAAAAATAAGGGATGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29340239 319 + 172585720 GTTTTTCGTTCGCTGGTCT-----------------------GAAAGATGTTTAT--TGATTCAGAGCG--TTTTCCCTC---TTCTTGCTCCGGTCTGGCTGCCAATTAACAACTAAAGGTAGAAGTCttatttaaagagtat-------------atacggcgtgcctgccctgcaacaagtgctttaataaaagaacaaagcagaaata-gcacttggcctcaaagagcttactttctactggCCCTAACAGTTGAAATCAAGCAAACGCT--GGGAAG------AAAACAAAAAC----------AAAAACAAAAAACTGGTTTCCACTCCTGTGAAAGAAGTAAGTAGGAGGATAAAAT-AAAAAATAAGGGATGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29000837 319 - 170955103 GTTTTTCGTTCGCTGGTCT-----------------------GAAAGATGTTTAT--TGATTCAGAGCG--TTTTCCCTC---TTCTTGCTCCGGTCTGGCTGCCAATTAACAACTAAAGGTAGAAGTCttatttaaagagtat-------------atacggcgtgcctgccctgcaacaagtgctttaataaaagaacaaagcagaaata-gcacttggcctcaaagagcttactttctactggaCCTAACAGTTGAAATCAAGCAAACGCT--GGGAAG------AAAACAAAAAC----------AAAAACAAAAAACTGGTTTCCACTCCTGTGAAAGAAGTAAGTAGGAGGATAAAAT-AAAAAATAAGGGATGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1978307 323 -   2996164 GTTTTTCGTTCGCTGGTCT-----------------------GAAAGATGTTTAT--TGATTCAGAGCG--TTTTCCCTC---TTCTTGCTCCGGTCTGGCTGCCAATTAACAACTAAAGGTAGAAGTCttatttaaagagtat-------------atacggcgtgcctgccctgcaacaagtgctttaataaaagaacaaagcagaaata-gcacttggcctcaaagagcttactttcta--gGACCTAACAGTTGAAGTCAAGCAAACGCT--GGGAAGaaaacaaaaacaaaaac----------aaaaacaaaaaACTGGTTTCCACTCCTGTGAAAGAAGTAAGTAGGAGGATAAAAT-AAAAAATAAGGGATGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1849982 325 -   2157725 GTTTTTCGTTCGCTGGTCT-----------------------GAAAGATACTTAT--TGATTCAGAGCG--TTTTCCCTC---TTCTTGCTCCGGTCTGGCTGCCAATTAACAACTAAAGGTAGAAGTCttatttaaagagtat-------------atacggtgtgcctgccctgcaacaagtgctttaataaaagaacaaagcagaaata-gcacttggcctcaaagagcttactttctactggaCCTAACAGTTGAAATCAAGCAAACGCT--GGGaagaaaacaaaaacaaaaac----------aaaagcaaaaaaCTGGTTTCCACTCCTGTGAAAGAAGTAAGTAGGAGGATAAAAT-AAAAAATAAGGGATGGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28300271 319 -  71996105 GTTTTTCTTTCGCTGGTCT-----------------------GAAAGATGTTTAT--TGATTCAGAGCG--TTTTCCCTC---TTCTTGCTCCGGTCTGGCTGCCAATTAACAACTAAAGGTAGAAGTCttatttaaagagtat-------------gtacagcgtgcctgccctgcgacaagtgcttttataaaagaacaaagcagaagta-gcacttggcctcaaagagcttactttctactggaCCTAACAGTTGAAATCAAGCAAACGCT--GGGAAG------AAAACAAAAAC----------AAAAACAAAAAACTGGTTTCCACTCCTGTGAAAGAAGTAAGTAGGAGGATAAAAT-AAAAAATAAGGGATGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1978287 319 +   2316924 GTTTTTCGTTCGCTGTTCT-----------------------GAAAGATGTTTAT--TGATTCAGAGCG--TTTTCCCTC---TTCTTGCTCCGGTCTGGCTGCCAATTAACAACTAAAGGTAGAAGTCttatttaaagagtat-------------atacggcgtgcctgccctgcaacaagtgctctaataaaagaacaaagcagaaata-gcacttggcctcaaagagcttactttctactggaCCTAACAGTTGAAATCAAGCAAACGCT--GGGAAG------AAAACAAAAAC----------AAAAACAAAAAACTGGTTTCCACTCCTGTGAAAGAAGTAAGTAGGAGGATAAAAT-AAAAAATAAGGGATGGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1858614 318 -   3067355 GTTTTTCATTCGCTGGTCT-----------------------GAAAGATGTTTAT--TGATTCAGAGCG--TTTTCCCTC---TTCTTGTTCCGGTCTCGCTGCCAATTAACAACTAAAGGTATAAGTCttatttaaagagtat-------------atactgcgtgcctgccctgggacaagtgcttt-ataaaagaacaaagctgaaata-gcacttggcctcaaagagcttactttctactggaCCTAACAGTTGAAATCAAGCAAACGCT--GGGAAG------AAAACAAAAAC----------AAAAACAAAAAACTGGTTTCCACTCCTGTGGAAGAAGTAAGTAGGCGGATAAAAT-CAAAAATAAGGGATGGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171386455 332 - 171630274 GGTTTTCGTTCGCTGGTGT-----------------------GAAAGATGTTTAT--TGACGCGAAGCG--TTTTCCCTC---TTCTTGCTGCAGTCTGGCTGCCAATTAACTACTAAAGGTAGAGGTCTTAGTTAACGAGTATAATTTACTCGTTAAtatggcgtgcctgccatgtgacaagcacttt-ataaaataacaaagcagaaata-gcacttggcctcaaggagcttactttctactggACCTGACAGTTGAAATCAAGCAAACGCTGGGGGAAC------AAAACAAAATT-------AAAAAGACCCCAAAACTTGTTTCAACTCCTGTGAAAG----AAGTAGGAGGCTAAAAT-AGAAAATAAGGATTGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            213635 318 -    375362 GATTTTCGTTTGCTGTTGT-----------------------GAAAGATGTTTAT--TGATTCGAAGCG--TTTTCCCTC---TTCTTGCTGCAGTCTGGCTGCCAATAAACTACTAAAGGTAGAAGTCTTGGTTAACGTat---------------atatggcgtgcccgccatgtgacaagcgcttt-ataaaataacaaagcagaaata-gcacttggcctcaaggagcttactttctactggaCCTGACCGTTGAAATCAAGCAAACCCT-GGGGAAC------AAAACAAGATT-----TAAAAAAAAACCCAAAACTTGTTTCAACTCCTGTGAAAG----AAGTAGGAGGTTAAAAT-AAAAAATAAGGATTGGG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      212492 325 -    373274 GATTTTCGTTCGCTGGTGT-----------------------GAAAAATGTTTGT--TGATTTGAAGCG--TTTTCCCTC---TTCTTGCTGCAGTCTGGCTTCCAATTAACTACTAAAGATAGAAGTCTTCCttaacgagtat-------------atatggcatgcccgccatgtgacaagcgcttt-ataaaataacaaagcagaaata-gcacttggcctcaaggagcttactttctactggacctgacagTTGAAATCAAGCAAACCCT-GGGGaac------aaaacaagattaaaaaaaaaaaaaaaCCCAAAACTTGTTTCAACTCCTGTGAAAG----AAGTAGGAGGCTAAAAT-AAAAAATAAGGATTGGG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      151274 317 -    285216 GATTTTCATT--CTGCTGT-----------------------GAAAGATGTTTAT--TGATCCGAAGCG--TTTTCCCTC---TTCTTGCTGCAGTCCGGCTGCCAATTAACTACTAAAGGTAGAAGTCttagttaacgagtat-------------atatggcgtgcctgccatgtgacaagcgcttt-ataaaataacaaagcagaaaca-gcacttggcctcaaggagcttattttctgttggACCTGACAGTTGAAATCAAGCAAACGCT-GGGGAAG------AAAACAAAATA------AAAAAAAACCTCAAAACTTGTTTCAACCCCTGTGAAAG----AAGTAGGAGGCTAAAAT-AAAAAATAAGGATTGGG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1524983 289 -   2232465 GTTTTTCACT------------------------------------GATGCTTCA--TAAAACTCAGCA--TTTTCC------TTCTTGCTGCAGT----CTGCCGGTTCACACCTAAAGGTAGAACTCTTTTTTAATGTGTGT-------------Atatggagtgcctgctatatgacaagtgcttt-acaaatgaacaaggcagaaaca-acacgtgtactcaaggaccttactttctataggaccagagagCTGAAATCAAGTGGGGGAG--AGGGAG------GGGCGGAGACT------------------AAAACTTACTTCAAGTCCTGTGTAAAAAATAAGCAAGCGGCTGAAAT--CAGAATAAGGGATGGA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25879103 207 +  26524999 GTTTTCCTCCCAT-----------------------------------------------CCCAGGGCAGCCTTTTCCTT---TTC---------------------------------------------ATCGGACGAGC---------------GCGCGGAGTGTGCGTCCCGTGCCAGG-GCTTC-AC------ACGGGGCGGAGCTGCGGGTGTGTACGCGAGGACCTTGCTTTCTAGTAGACCTAGCAGGTGACCTCAAGT------C--AGGAGA------AATACACTGGC-----------------TGAAATTTGTTTCAGGTCCT-------------------------AGC-ACGAGGTAAGGAACTGG
i canFam3.chr35            C 0 I 42
s dasNov3.JH561790             18586 328 -    302817 -GTTTTCCTGTTCTGGTCCTCTGCCTGTCTATCTTAGTTTGGAAAAGGTGTTAAGTATGATAGCTGGCA--TTTTCCTTCTTGTTCTTATCAGTGTCTGGTTGCCCTTTTATACATAAAGATA-AATTTGTCTTTAAAAGATAC-------------ACCTAGGGTGCATGCTGCATGACAAGAACT---ATACAAATACATTGCAGAACGC-GCACCTGTACTCAAGGAGCTTACCTTCTGCTGGATGAGGCAGTTAAAATCAATTAAACACA--------------GACACAAAATG---------------GCTAAAATTTGTTTCAACTCCTAGGAAAG-AATAAGAAGCAGGCAGAGAT-AAAGAATAAGGAATG--
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940077 510 -   3516910 I

a score=695992.000000
s hg38.chr6_GL000254v2_alt    147517 71 +   4827813 GA------CTTCTTTAGGAAGCATCCACCCTCCTGGAGGTCCTGAAGAAATGCTATTT-AGCTGAAAAATGA-GTATTT
s panTro5.chr6              29128653 71 + 175400573 GA------CTTCTTTAGGAAGCATCCACCCTCCTGGAGGTCCTGAAGAAATGCTATTT-AGCTGAAAAATGA-GTATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29362992 71 + 173848474 GA------CTTCTTTAGGAAGCATCCACCCTCCTGGAGGTCCTGAAGAAATGCTATTT-AGCTGAAAAATGA-GTATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5163196 71 +   6154872 GA------CTTCTTTAGGAAGCATCCACCCTCCTGGAGGTCCTGAAGAAATGCTATTT-AGCTGAAAAATGA-GTATTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74164448 71 + 122973662 GG------CTTCTTTAGGAAGCATCCATCCTCCTGAAGATCCTGAAGAAATGCTATTT-AGCTGAAAAATGA-GTGTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29340558 71 + 172585720 GG------CTTCTTTAGGAAGCATCTATCCTCCTGGAGGTACTGAAGAAATGCTATTT-AGCTGGAAAATGA-GTATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29001156 71 - 170955103 GG------CTTCTTTAGGAAGCATCCATCCTCCTGGAGGTACTGAAGAAATGCTATTT-AGCTGGAAAATGA-GTATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1978630 71 -   2996164 GG------CTTCTTTAGGAAGCATCCATCCTCCTGGAGGTACTGAAGAAATGCTATTT-AGCTGGAAAATGA-GTATTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1850307 71 -   2157725 GG------CTTCTTTAGGAAGCATCCATCCTCCTGGAGGTACTGAAGAAATGCTATTT-AGCTGGAAAATGA-GTATTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28300590 71 -  71996105 GG------CTTCTTTAGGAAGCATCCATCCTCCTGGAGGTACTGAAGAAATGCTATTT-AGCTGGAAAATGA-GTATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1978606 71 +   2316924 GG------CTTCTTTAGGAAGCATCCATCCTCCTGGAGGTACTGAAAAAATGCTACTT-AGCTGGAAAATGA-GTGTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1858932 71 -   3067355 GG------CTTCTTTAGGAAGCATCCATCCTCCTGGAGGTACTGAAGAAATGCTGTTT-AGCTGGAAAATGA-GTATTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171386787 70 - 171630274 GA-------TTCTTTGGGAAGCATTCATCTCCCTGGAGGTTCTGAAGAAATGCTATTT-AGCAGAAGAATGG-GTGTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            213953 70 -    375362 GA-------TTCTTTAGGAAGCATTCATCTTCCTGGAGGTTCTGAAGAAATGCTATTT-AGCAGAAGAATGG-TTATTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      212817 70 -    373274 GA-------TTCTTTAGGAAGCATTCATCTTCCTGGAAGTTCTGAAGAAATGCTATTT-AGCAGAAGAATGG-TTATTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      151591 70 -    285216 GA-------TTCTTTAGGAAGCATTCATCTTCCTGGAGGTTCTGAAGAAATGCTATTT-AGCAGAAGAATGG-GTATTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1525272 75 -   2232465 GGCTGCGTCTTCCCTAGGTGGCGT----CTTCCTAGAGGTCTAGAAGAGATGCCATTTAAGCTGAAGATTGAGGTATAT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             18914 45 -    302817 ------GCCCTTTTGAAGGGATATTCAA--------------------------ACTG-AAGTGAAGGATGA-GCTTAT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940077 510 -   3516910 I
e canFam3.chr35             25879310 42 +  26524999 I

a score=1534402.000000
s hg38.chr6_GL000254v2_alt    147588 148 +   4827813 TTCAGGCAGAAGGAATAGCATTTG-TTAATTCACTGAGAATCTGAAATCACTAAGTATTT-TCAAAGT-TCAGGTTGCTGAACTCTTGTGTGTATGTGTATGGAGCTGGGGGTGGGTGG-GGGCGGGGGAAGGAGTGGAAATCACTACAGAG
s panTro5.chr6              29128724 148 + 175400573 TTCAGGCAGAAGGAATAGCATTTG-TTAATTCACTGAGAATCTGAAATCACTAAGTATTT-TCAAAGT-TCAGGTTGCTGAACTCTTGTGTGTATGTGTTTGGAGCTGGGGGTGGGTGG-GGGCGGGGGAAGGAGTGGAAATCACTACAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29363063 148 + 173848474 TTCAGGCAGAAGGAATAGCATTTG-TTAATTCACTGAGAATCTGAAATCACTAAGTATTT-TCAAAGT-TCAGGTTGCTGAACTCTTGTGTGTATGTGTTTGGAGCTGGGGGTGGGTGG-GGGCGGGGGAAGGAGTGGAAATCACTACAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5163267 147 +   6154872 TTCAGGCAGAAGGAATAGCATTTG-TTAATTCACTGAGAATCTGAAATCACTAAGTATTT-TCAAAGT-TCAGGTTGCTGAACTCTTGTGTGTATGTGTTTGGAGCTGGGGGTGGGT-G-GGGCGGGGGAAGGAGTGGAAATCACTACAGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74164519 148 + 122973662 TTCAGGAAGAAGGAATAGCATTTG-TTAATTCACTGAGAATCTGAAATCACTAAGTATTT-TCAAAGT-TTAGGTTGCTGAATTCTTGTGTGTATGTGTTTGTAGCTGGGAGTGGGTGG-GTGCGGGGGAAGGAGTGGAAATCACTACAGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29340629 149 + 172585720 TTCAGGCAGAAGGAATAGCATTTG-TTAATTCGCTGAGAATCTGAAATCACTAAGTATTT-GCCAAAT-TCAGGTTGCTGAACGCTTGTGTGTTTGTGTTTGGAGCTGGGGGTGGGTGGCGGGCTGGGGAAGGAGTGTAAATCACTACAGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29001227 149 - 170955103 TTCAGGCAGAAGGAATAGCATTTG-TTAATTCGCTGAGAATGTGAAATCACTAAGTATTT-GCCAAAT-TCAGGTTGCTGAACGCTTGTGTGTTTGTGTTTGGAGCTGGGGGTGGGTGGCGGGCTGGGGAAGGAGTGTTAATCACTACAGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1978701 149 -   2996164 TTCAGGCAGAAGGAATAGCATTTG-TTAATTCGCTGAGAATCTGAAATCACTAAGTATTT-GCCAAAT-TCAGGTTGCTGAACGCTTGTGTGTTTGTGTTTGGAGCTGGGGGTGGGTGGCGGGCTGGGGAAGGAGTGTAAATCACTACAGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1850378 149 -   2157725 TTCAGGCAGAAGGAATAGCATTTG-TTAATTCGCTGAGAATCTGAAATCACTAAGTATTT-GCCAAAT-TCAGGTTGCTGAACGCTTGTGTGTTTGTGTTTGGAGCTGGGGGTGGGTGGCGGGTGGGGGAAGGAGTGTAAATCACTACAGAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28300661 145 -  71996105 TTCAGGCAGAAGGAATAGCATTTG-TTAATTCGCTGAGAATCTGAAATCAC----TATTT-GCCAAAT-TCAGGTTGCTGAACGCTTGTGTGTATGTGTTTGGAGCTGGGGGTCGGTGGCGGGCGGGGGAAGGAGTGTAAATCACTACAGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1978677 149 +   2316924 TTCAGGCAGAAGGAATAGCATTTG-TTAATTCGCTGAGAATCTGAAATCACTAAGTATTT-GCCAAAT-TCAGGTTGCTGAACGCTTGTGTGTTTGTGTTTGGAGCTGGGGGTGGGTGGCGGGCGGGGGAAGGAGTGTAAATCACTACAGAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1859003 150 -   3067355 TTCAGGCAGAAGGAATAGCATTTG-TTAATTCACTGAGAATCTGAAATCACTAAGTATTT-GCAAAGTATCAGGTTGCTGAACGCTTGTGTGTATGTGTTTGGAGCTGGGAGTGGGTGGGGGGCGGGAGAAGGAGTGGAAATCACTACAGAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171386857 150 - 171630274 TTCAGGCAGAAGGAATAGCATTTG-TTAATTCACTGAGAATCTGAAATCACTAAGTATTTGTCAAAGT-TCAGCTTGCTGAACTCGTGTGTGTATGTGTTTGGAGCTGGGAATGGGCGGGGGGTGGGGGAATGAGTGGAAATCACTACAGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            214023 149 -    375362 TTCAGGTAGAAGGAATAGCATTTG-TTAATTCACTGAGAATCTGAAATCACTAAGTATTT-TCAAAGT-TCAGGTTGCTGAACTCTTGTGTGTATGTGTTTGGAGCTGGGGATGGGCAGGGTGTGGGGGAAGGAGCAGAAATCACTACAGAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      212887 150 -    373274 TTCAGGCAGAAGGAATAGCATTTG-TTAATTCACTGAGAATCTGAAATCAGTAAGTATTTTTCAAAGT-TCAGGTTGCTGAATTCTTGTGTGTATGTGTTTGGAGCTGGGGATGGGCGGGGGGTGGGGAAAGGAGCGGAAATCactacagaa
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      151661 147 -    285216 TTCAGGCAGAAGGAATAGCATTTG-TTAATTCACTGAGAATCTGAAATCACTTAGTATTTTTCAAAGT-TCAGGTTGCTGAACTCTTGTGTGTATGTGTTTGGAGCTGGGGATGGGTGGGG---GGGGGAAGGAGCGGAAATCACTACAGGA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1525347 119 -   2232465 TTTAGGCAGAAGGAATAGCATTTGCTTATCTCCCTAAGAATCTGAAAGTACCAAGCATTC-TCAAAAT-TCAGGTTGCTGAACATTT-----------------------------TGA-GGAGTGGGGAACCACTA-AAACCAAAAAAAAA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25879352 109 +  26524999 TCCCAGCAGAAGGAAAAAC---TG-CCAACTCGTTGAGAACCTAGAGGCACCTGGTCTTC--CCGAAC-TCAGATTACTGAACTTCT--------------------------GGGGGGAGGGAGGAGGAAGGGTT-----CCCTTA-----
i canFam3.chr35            I 42 C 0
s dasNov3.JH561790             18959  94 -    302817 TCCAGGCAG----------------CTAACTTGCTGAGAACCTGAAAGCACCTGGATTTC-TCAAAGT-TCAGATC-CTGAAC---------------------GTTGGGGGTAGGTAGGGCG------------------TCACTACAACT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940077 510 -   3516910 I

a score=1276035.000000
s hg38.chr6_GL000254v2_alt    147736 109 +   4827813 AAAA--------ATCAACAAAAAGGGAT-AAAG-GGAATTAAATTTCTGGGAACAAGATCTCTCACAGAGATTCTCTATGGCTGAGACTCTGAACATGGTTTAAAATTAGTGTTCTCCA
s panTro5.chr6              29128872 109 + 175400573 AAAA--------ATCAACAAAAAGGGAT-AAAG-GGAGTTAAATTTCTGGGAACAAGATCTCTCACAGAGATTCTCTATGGCTGAGACTCTGAACATGGTTTAAAATTAGTGTTCTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29363211 109 + 173848474 AAAA--------ATCAACAAAAAGGGAT-AAAG-GGAGTTAAATTTCTGGGAACAAGATCTCTCACAGAGATTCTCTATGGCTGAGACTCTGAACATGGTTTAAAATTAGTGTTCTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5163414 109 +   6154872 AAAA--------ATCAACAAAAAGGGAT-AAAG-GGAGTTAAATTTCTGGGAACAAGATCTCTCACAGAGATTCTCTATGGCTGAGACTCTGAACATGGTTTAAAATTAGTGTTCTCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74164667 109 + 122973662 AAAA--------ATCAACAAAAAGGGAT-AAAG-GGAGTTAAATTTCTGGCAACAAGATCTCTCACAGAGATTCTCTATGGCTGAGACTCTGAACATGGTTTAAAATTAATGTTCTCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29340778 100 + 172585720 -AAA--------ATCAACAAAAAGAGAT-AAAG-TGAGTTAAATATCTGGGAACAAGCTCTCTCATAGAAATTC--------TGAGACTCTGAACATGATTTAAAATTAGTGTTCTCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29001376 100 - 170955103 -AAA--------ATCAACAAAAAGAGAT-AAAG-TGAGTTAAATATCTGGGAACAAGCTCTCTCATAGAAATTC--------TGAGACTCTGAACATGATTTAAAATTAGTGTTCTCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1978850 100 -   2996164 -AAA--------ATCAACAAAAAGAGAT-AAAG-TGAGTTAAATATCTGAGAACAAGCTCTCTCATAGAAATTC--------TGAGACTCTGAACATGATTTAAAATTAGTGTTCTCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1850527 100 -   2157725 -AAA--------ATCAACAAAAAGAGAT-AAAG-TGAGTTAAATTTCTGGGAACAAGCTCTCTCATAGAAATTC--------TGAGACTCTGAACATGATTTAAAATTAGTGTTCTCCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28300806 100 -  71996105 -AAA--------ATCAACAAAAAGAGAT-AAAG-TGAGTTAAATTTCTGGGAACAAGCTCTCTCATAGAAATTC--------TGAGACTCTGAACATGATTTAAAATTAGTGTTCTCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1978826 100 +   2316924 -AAA--------ATCAACAAAAAGAGAT-AAAG-TGAGTTAAATTTCTGGGAACAAGCTCTCTCATAGAAATTC--------TGAGACTCTGAACATGATTTAAAATTAGTGTTCTCCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1859153 108 -   3067355 -AAA--------ATCAACAGAAAGAGAC-GAAG-TGAGTTAAATTTCTGGGAACAAGCTCTCTCACAGAAATTCTCTATGGGTGAGACTCTGAACATGATTTAAAATTAGTGTTCTCCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171387007 109 - 171630274 AAAA--------AGCAACGAAAAGGGAT-AAAG-TGAGTTAAATTTCTGGGAACAAGATCTCTCACAGATATTCTCTACGGCTGAGACTCTGCACATGGCTTAAAATCAGTGTTCTCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            214172 109 -    375362 AAAA--------AACAACGAAAAGGGAT-AAAG-TGAGTTAAATTTCTGGGAGCAAGATCTCTCACAGATATTGTCTATGGCTGAGACTCTGAACATGGTTTAAAATCAGTGTTCTCCA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      213037 117 -    373274 aaaaacaacaacaacaacaaaaaGGGAT-AAAG-TGAGTTAAATTTCTGGGGACTAGATCTCTCACAGATATCCTCTATGGCTGAGACTCTGAACATGGTTTAAAATCAGTGTTCTCCA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      151808 109 -    285216 AAAA--------AACAACGAAAAGGGAT-AAAG-TGAGTTAAATTTCTGGGAACAAGATCTCTCACAGATATTCTCTATGGCTGAGACTCTGAACACGGTTTAAAATCAGTGTTCTCCA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      940587 110 -   3516910 AAAA--------ATCAACTGAAAGGGAT-AAAGATGAGCTAAATTTCTGAGAATGAGATCTCTGACAAGGACTCTCTATGACTGAGGCTCTGAAGATGATTTGGAATTGGTGTCCTCCA
i proCoq1.NW_012147953v1   I 510 I 75
s otoGar3.GL873742           1525466 111 -   2232465 AAAA--------CCAAAGTAAGAGGGATAAAAGTTGAGTTAAATTTCCGCTAACAAGATCTCTGACAAGGATTCTCTATGACTGACGCTGTGCAGATGATTTAAAATTGGTGTTCTCCA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25879461 110 +  26524999 AAAA--------ATCAGCAGAAAGGGGT-AAAGGTGAGTTGAATTTCTAGGAACAAGATCTCTGACTAGGATTCCTTATGACTGTGGCTTTGCACATGGTTTGAAATCAGTGTTCCCCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             19053  71 -    302817 ----------------------------------------AAA------AGAACAAGGTGTCTGCCTAGGATTCTCCATGACTAAGAC--TGAACATGGTTGGAAATTGGTGTCCTATG
i dasNov3.JH561790         C 0 C 0

a score=236812.000000
s hg38.chr6_GL000254v2_alt    147845 18 +   4827813 GATTTTCACTAACTACCA
s panTro5.chr6              29128981 18 + 175400573 GATTTTCACTAACTACCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29363320 18 + 173848474 GATTTTCACTAACTACCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5163523 18 +   6154872 GATTTTCACTAACTACCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74164776 18 + 122973662 GATTTTCACTAGCTACCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29340878 18 + 172585720 GATTTTCACTAGCTACCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29001476 18 - 170955103 GATTTTCACTAGCTACCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1978950 18 -   2996164 GATTTTCACTAGCTACCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1850627 18 -   2157725 GATTTTCACTAGCTACCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28300906 18 -  71996105 GATTTTCACTAGCTACCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1978926 18 +   2316924 GATTTTCACTAGCTACCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1859261 18 -   3067355 AATTTTCACTAGCTACCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171387116 18 - 171630274 GATTTCCACTAGCTACCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            214281 18 -    375362 GATTTCCACTAGCTACCA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      213154 18 -    373274 GATTTCCACTAGCTACCA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      151917 18 -    285216 GATTTCCACTAGTTACCA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1525577 18 -   2232465 GATTTTCACTAGCTAGTA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25879571 17 +  26524999 GATTTCCA-TAGCTCCCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             19124 18 -    302817 GGCTTTCACTGCCTCCCA
i dasNov3.JH561790         C 0 I 14
e proCoq1.NW_012147953v1      940697 75 -   3516910 I

a score=366375.000000
s hg38.chr6_GL000254v2_alt    147863 40 +   4827813 AAAAAGGTAACTGTCATCACCTGGCAAATCGTCATCACTT----
s panTro5.chr6              29128999 40 + 175400573 AAAAAGGTAACTGTCATCACCTGGCAAATCGTCATCACTT----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29363338 40 + 173848474 AAAAAGGTAACTGTCATCACCTGGCAAATCGTCATCACTT----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5163541 40 +   6154872 AAAAAGGTAACTGTCATCACCTGGCAAATCATCATCACTT----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74164794 40 + 122973662 AAAAAGGTAACTGTCATCACCTGGCAAATAGTCATCACTT----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29340896 40 + 172585720 AAAAAGGTAACTGTCATCACCAGGCAAATCGTCATCACTT----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29001494 40 - 170955103 AAAAAGGTAACTGTCATCACCAGGCAAATCGTCATCACTT----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1978968 40 -   2996164 AAAAAGGTAACTGTCATCACCAGGCAAATCGTCATCACTT----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1850645 40 -   2157725 AAAAAGGTAACTGTCATCACCAGGCAAATCGTCATCACTT----
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28300924 40 -  71996105 AAAAAGGTAACTGTCATCACCAGGCAAATCATCATCACTT----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1978944 40 +   2316924 AAAAAGGTAACTGTCATCACCAGGCAAATCGTCATCACTT----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1859279 40 -   3067355 AAAAAGGTAACTGTCATCACCAGGCAAATTGTCATCACTT----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171387134 44 - 171630274 TAAAAGGTAACTGTCATCACCTCACAAACAGTCATCACGTAAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            214299 44 -    375362 AAAAAGGTAACTGTCATCACCTCACAAATCATCATCACTTAAAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      213172 44 -    373274 AAAAAGGTGACTGTCATCACCTCACAAATCGTCATCACTTAAAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      151935 44 -    285216 AAAAAGGTAACTGTCATCACCTCACAACTCGTCATCACTTAAAG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1525595 43 -   2232465 C-AAATATAATGATCAGCGTCTCCCAAATACTGATCTTATAAAG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25879588 39 +  26524999 TAAACACAA-----CACGACCTCCCAAATAATCATCTCAGAGAG
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             19142 14 -    302817 I
e proCoq1.NW_012147953v1      940697 75 -   3516910 I

a score=136351.000000
s hg38.chr6_GL000254v2_alt    147903 9 +   4827813 AAGCCTAAA
s panTro5.chr6              29129039 9 + 175400573 AAGCCTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29363378 9 + 173848474 AAGCCTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5163581 9 +   6154872 AAGCCTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74164834 9 + 122973662 AAGCCTAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29340936 9 + 172585720 AAGCCTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29001534 9 - 170955103 AAGCCTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1979008 9 -   2996164 AAGCCTAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1850685 9 -   2157725 AAGCCTAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28300964 9 -  71996105 AAGCCTAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1978984 9 +   2316924 AAGCCTAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1859319 9 -   3067355 AAGCCTAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171387178 9 - 171630274 AAACCTAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            214343 9 -    375362 AAGCCTAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      213216 9 -    373274 AAGCCTAAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      151979 9 -    285216 AAGCCTAAA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1525638 9 -   2232465 AAACCTAAA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25879627 9 +  26524999 AAGCCTTAA
i canFam3.chr35            C 0 I 1
s dasNov3.JH561790             19156 9 -    302817 AAGCCTAAA
i dasNov3.JH561790         I 14 C 0
e proCoq1.NW_012147953v1      940697 75 -   3516910 I

a score=1428697.000000
s hg38.chr6_GL000254v2_alt    147912 120 +   4827813 GGCAGAAACCACCAAAAGCTTTAATCC-AAACTGAGCTGTCCTCTAGTGCAAC-CTGTATTAGAGTAGTCATGATAGGTTGAATTTTTGCAAGTGGGCCAATGCCATAAATTGATCTGAACA
s panTro5.chr6              29129048 120 + 175400573 GGCAGAAACCACCAAAAGCTTTAATCC-AAACTGAGCTGTCCTCTAGTGCAAC-CTGTATTAGAGTAGTCATGATAGGTTGAATTTTTGCAAGTGGGCCAATGCCATAAATTGATCTGAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29363387 120 + 173848474 GGCAGAAACCACCAAAAGCTTTAATCC-AAACTGAGCTGTCCTCTAGTGCAAC-CTGTATTAGAGTAGTCATGATAGGTTGAATTTTTGCAAGTGGGCCAATGCCATAAATTGATCTGAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5163590 120 +   6154872 GGCAGTAACCACCAAAAGCTTTAATCC-AAACTGAGCTGTCCTCTAGTGCAAC-CTGTATTAGAGTAGTCATGATAGGTTGAATTTTTGCAAGTGGGCCAATGCCATAAATTGATCTGAACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74164843 120 + 122973662 GGCAGAAACCACCAAAAGTTTTAATCC-AAACTGAGCTGTCCTCTAACGCAAC-CTGTATTAGGGTAGTCATGATAGGTTGAATTTTTGCAAGTCGGCCAATGCCATAAATTGATCTGAACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29340945 120 + 172585720 GGCAGAAACCACCAAAAGCTTTAATCC-AAACTGAGCCGTCCTCTAGTGCAAC-CTGTATTAGGGTAGTCATGATAGGTTCAATTTTTGCAAGCGGGCCAGTGCCATAAATTGACCTGAACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29001543 120 - 170955103 GGCAGAAACCACCAAAAGCTTTAATCC-AAACTGAGCCGTCCTCTAGTGCAAC-CTGTATTAGGGTAGTCATGATAGGTTCAATTTTTGCAAGCGGGCCAGTGCCATAAATTGACCTGAACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1979017 120 -   2996164 GGCAGAAACCACCAAAAGCTTTAATCC-AAACTGAGCCGTCCTCTAGTGCAAC-CTGTATTAGGGTAGTCATGATAGGTTCAGTTTTTGCAAGCGGGCCAGTGCCATAAATTGACCTGAACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1850694 120 -   2157725 GGCAGAAACCACCAAAAGCTTTAATCC-AAACTGAGCCGTCCTCTAGTGCAAC-CTGTATTAGGGTAGTCATGATAGGTTCAATTTTTGCAAGCGGGCCAGTGCCATAAATTGACCTGAACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28300973 120 -  71996105 GGCAGAAACCACCAAAAGCTTTAATCC-AAACTGAGCCGTCCTCTAGTGCAAC-CTGTATTAGGGTAGTCATGATAGGTTCAATTTTTGCAACCGGGCCAGTGCCATAAATTGACCTGAACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1978993 120 +   2316924 GGCAGAAACCACCAAAAGCTTTAATCC-AAACTGAGCCGTCCTCTAGTGCAAC-CTGTATTAGGGTAGTCATGATAGGTTCAACTTTTGCAAGCGGGCCAGTGCCATAAATTGACCTGAACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1859328 120 -   3067355 GGCAGAAACCACCAAAAGCTTTAATCC-AAACTGAGCCGTCCTCTAGTGCAAC-CTGTATTAGGGTAGTCATGATAGGTTCAATTTTTGCAAGCGGGCCAGTGCCATAAATTGACCTGAACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171387187  62 - 171630274 GGCAGAAACCACCAAAAGCTTTAATTC-CAACTGAGCCACCCTCCAGTGCTGC-CTCTCTTAGG----------------------------------------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            214352 115 -    375362 GGCAGAAACCACCAAAAGCTTTAATCC-CAACTGAGCTGCCCTCTGGTGCAGC-CTCTATTAGGGCAGTCATGATAGGTTCAGTTTTTGCAGGAGGGTCA-----ATAAATGGATCTGAACA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      213225 115 -    373274 GGCAGAAACCACCTAAAGCTTTAATCC-CAAGTGAGCCGCCCTCTAGTGCAGC-CTCTATTAGGGCAGTCATGATAGGTTCAGTTTTTGCAAGAGGGTCA-----ATAAAGGGATCTGAACA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      151988 115 -    285216 GGCAGAAAACACCAAAAGCTTTAATCC-CAACGGAGCCGCCCTCTAGTGCAGC-CTCTATTAGGGCAGTCATGATAGGTTCAGTTTTTGCAAGAGGGTCA-----ATAAATGGATCTGAACG
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      940772 120 -   3516910 GGCAGAAACCACCAAAGGTTTTATTTC-AAACTGAACTATCCTCCGTTGCAAC-TTCTATTAGGGTAGTCGTGATAGGTTGAGTTTAAGCAAGAGGGCAAATGTCATAAATGGGTGTGAACA
i proCoq1.NW_012147953v1   I 75 C 0
s otoGar3.GL873742           1525647 121 -   2232465 GGCAAAAACCACCAAAGGTTTTATTTC-AAACGGAACTATCCTCTGGTGCAACTTTTTACTAAGGTAGTCATGATAGGTCGAGTTTAACCAAGAGGTCAAATGTCACAAATGGATATGGAAA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25879637 121 +  26524999 GACAGAAGCTGCAAAAGGCTTTTACCCTAAACTGAACTGTCCTCCTGAAACAT-CGCTAGTAGTTCAGTCATGATAGGTTCATTTTTAGCAAGAGTGCGAATCCCATAAATGGATCTGagca
i canFam3.chr35            I 1 I 7018
s dasNov3.JH561790             19165 118 -    302817 GGCTGAAACCACCAAGGGCTTTTATCCCAAATGGAACAGTCCT---GAGTTAA-TTTTATAAGTATCTTCATGGTAGGTTCAGTTTTAGCAAAAGGGCAAATACCACAAATGAATCTGAAGA
i dasNov3.JH561790         C 0 C 0

a score=1189860.000000
s hg38.chr6_GL000254v2_alt    148032 103 +   4827813 TTACTGCAAAGAAAGCACAGTGAGAGCAGGATCAAG-CAAGTTTTCATCATTTTTAATTGAGCTCCAGTCGCTTCTTGAGGAAAAGAAAGCTAAAATTGATTCT
s panTro5.chr6              29129168 103 + 175400573 TTACTGCAAAGAAAGCACAGTGAGAGCAGGATCAAG-CAAGTTTTCATCATTTTTAATTGAGCTCCAGTCGCTTCTTGAGGAAAAGAAAGCTAAAATGGATTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29363507 103 + 173848474 TTACTGCAAAGAAAGCGCAGTGAGAGCAGGATCAAG-CAAGTTTTCATCATTTCTAATTGAGCTCCAGTCGCTTCTTGAGGAAAAGAAAGCTAAAATGGATTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5163710 103 +   6154872 TTACTGCAAAGAAAGCACAGTGAGAGCAGGATCAAG-CAAGTTTTCATCATTTTTAATTGAGCTCCAGTCGCTTCTTGAGGAAAAGAAAGCTAAAATTGATTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74164963 103 + 122973662 TTACTGCAAACAAAGCACAGCGAGAGCAGGATCAAG-CAAGTTTTCATCATTTTTAATTGAGCTCCAGTCGCTTCTTGAGGAAAAGGAAGCTAAAATTGATTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29341065 103 + 172585720 TTACTACAAAGAAAGCACAGTAAGCGCAGGATCAAG-CAAGTTTTCATCATTTTTAACTGAGCTCCAGTCGCTTCTTGAGGAAAAGGAAGCTAAAATTGATTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29001663 103 - 170955103 TTACTACAAAGAAAGCACAGTAAGCGCAGGATCAAG-CAAGTTTTCATCATTTTTAACTGAGCTCCAGTCGCTTCTTGAGGAAAAGGAAGCTAAAATTGATTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1979137 103 -   2996164 TTACTACAAAGAAAGCACAGTAAGCGCAGGATCAAG-CAAGTTTTCATCATTTTTAACTGAGCTCCAGTCGCTTCTTGAGGAAAAGGAAGCTAAAATTGATTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1850814 103 -   2157725 TTACTACAAAGAAAGCACAGTGAGCGCAGGATCAAG-CAAGTTTTCATCATTTTTAACTGAGCTCCAGTCGCTTCTTGAGGAAAAGGAAGCTAAAATTGATTCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28301093 103 -  71996105 TTACTACAAAGAAAGCACAGTGAGCGCAGGATCAAG-CAAGTTTTCATCATTTTTAACTGAGCTCCAGTCGCTTCTTGAGGAAAAGGAAGCTAAAATTGATTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1979113 103 +   2316924 TTACTACAAAGAAAGCACAGTGAGCGCAGGATCAAG-CAAGTTTTCATCATTTTTAACTGAGCTCCAGTCGCTTCTTGAGGAAAAGGAAGCTAAAATTGATTCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1859448 103 -   3067355 TTACTACAAAGAAAGCACAGTGAGCGCACGATCAAG-CAAGTTTTCATCATTTTTAATTGAGCTCCAGTCGCTTCTTGAGGAACAGGAAGCTAAAATTGATTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171387249  96 - 171630274 ------CAGAGAAAGCACAGGGAGAGCAGGATAAAG-CAAA-TTTCCTCATTTTTAATTGAGCTCCAGTCCCCTCTTGAGGAAAAAGAAGCTAAAACTGATTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            214467 102 -    375362 TTACTACAGAGAAAGCACAGTGAGAGCAAGATAAAG-CAAA-TTTCATCATTTTTAATTGAGCTCAAATCCCCTCTTGAGGAAAAATAAGCTAAAACTGATTCT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      213340 102 -    373274 TTACCACAGAGAAAGCATAGTGAGAGCAGGATAAAG-CAAA-TTTCATCATTTTTAATTGAGCTCCAGTTCCCTCTTGAGGAAAAAGAAGCTAAAACTGATTCT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      152103 102 -    285216 TTACTACAGAGAAAGCACAGTGAGAGCAGGATAAAG-CAAA-TTACATCATTGTTAAGTGCGCTCCAGTCCCCTCTTGAGGAAAAAGAAGCTAAAACCGATTCT
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      940892 104 -   3516910 TAACTACAGAGAAAGAGCAGTGAGAGATGGGTAAGCAAAAGTCCTGATCATTTTTTATTGAGCTCTAGTCGCTTTTTGCAGAAAAAGGAGCTAAAATTGAttct
i proCoq1.NW_012147953v1   C 0 I 3320
s otoGar3.GL873742           1525768  93 -   2232465 TTACTGCAGAGAA--AGCAGTGAGAGAT---------AAAGTCCTGGTCATTTTTAATTGAGCTCAAATCACTTTTTGCAGAAAAAGGAGTTAAACTTAATTCT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             19283  94 -    302817 TTGCTGTAGAGAA---ATAGTGAAAGCTGGAT-----GAAGTCCTGATCCTTTAAAATTAAGCTCCAG--ATTTCTCAAGGAAAAAGAAGCTCAAATTAACTCT
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25879758 7018 +  26524999 I

a score=436632.000000
s hg38.chr6_GL000254v2_alt    148135 36 +   4827813 CAAGAACATTTGTTTCTGTGAGAATATGTGGTAACT
s panTro5.chr6              29129271 36 + 175400573 CAAGAACATTTGTTTCTGTGAGAATATGTGGTAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29363610 36 + 173848474 CAAGAACATTTGTTTCTGTGAGAATATGTGGTAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5163813 36 +   6154872 CAAGAACATTTGTTTCTGTGAGAATATGTGGTAACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74165066 36 + 122973662 CAAGAACATTTGTTTCTGTGAGAATATGTGGTAACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29341168 36 + 172585720 CAAGAACATTTGTTTCTGTGAGAATACGTGGTAACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29001766 36 - 170955103 CAAGAACATTTGTTTCTGTGAGAATACGTGGTAACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1979240 36 -   2996164 CAAGAACATTTGTTTCTGTGAGAATACGTGGTAACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1850917 36 -   2157725 CAAGAACATTTGTTTCTGTGAGAATACGTGGTAACT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28301196 36 -  71996105 CAAGAACATTTGTTTCTGTGAGAATACGTGGTAACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1979216 36 +   2316924 CAAGAACATTTGTTTCTGTGAGAATACGTGGTAACT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1859551 36 -   3067355 CAAGAACATTTGTTTCTGTGAGAATACGTGGTAACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171387345 36 - 171630274 CAAGAACATTTGTTTCTGTGAGAATATGTGGTAACT
i calJac3.chr4             C 0 I 331
s saiBol1.JH378348            214569 36 -    375362 CAAGAACATTTGTTTCTGTGAGAATATGTGGTAACT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      213442 36 -    373274 CAAGAACATTTGTTTCTGTGAGAATATGTGGTAGCT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      152205 36 -    285216 CAAGAACATTTGTTTCTGTGAGAATATGTGGTAACT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1525861 36 -   2232465 TGAGAATGTTTGGTACTGTGACAATATGTGGTAAAT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             19377 28 -    302817 TGAGAATGAT--------TGAAATTATATGGTGATT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I

a score=3103422.000000
s hg38.chr6_GL000254v2_alt    148171 287 +   4827813 GAATAAGAATTCTTTAAAAAGAAACAACGCAATTCCCAGATTTAACACCAACGCCAGTTAACATTTACCGAATGCATACACTGTAGCTGCACTATTCCAActatgagaaatatattaatagtcttcttttacagatgtagaaactgacacctaa--aagggtataac----acattgccca-----acacaacta----------gtaaagggtaaag-ctggaa-----------------------acttaa--ccaaaatattAAGTTATTTCTGGAGCACAAGTCTCAATGTTTAGAACAAATTT-----------TTATTGTTTAATGGCACGATGCA--------------------------GT
s panTro5.chr6              29129307 287 + 175400573 GAATAAGAATTCTTTAAAAAGAAACAACGCAATTCCCAGATTTAACACCAACGCCAGTTAACATTTACCGAATGCATACACTGTAGCTGCACTATTCCAActatgagaaatatattaatagtcttcttttacagatgtagaaactgacacctaa--aagggtataat----acattgccca-----acacaacta----------ataaagggtaaag-ctggaa-----------------------acttaa--ccaaaatattAAGTTATTTCTGGAGCACAAGTCTCAATGTTTAGAACAAATTT-----------TTATTGTTTAATGGCACGATGCA--------------------------GT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29363646 287 + 173848474 GAATAAGAATTCTTTAAAAAGAAACAACGCAATTCCCAGATTTAACACCAACGCCAGTTAACATTTACCGAATGCATACACTGTAGCTGCACTATTCCAActatgagaaatatattaatagtcttcttttacagatgtagaaaccgacacctaa--aagggtataat----acattgccca-----acacaacta----------ataaagggtaaag-ctggaa-----------------------acttaa--ccaaaatattAAGTTATTTCTGGAGCACAAGTCTCAATGTTTAGAACAAATTT-----------TTATTGTTTAATGGCACGATGCA--------------------------GT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5163849 284 +   6154872 GAATAAGAATTCTTTAAAAAGAAACAACGCAATTCCCAGATTTAACACCAACGCCAGTTAACATTTACCGAATGCATACCCTGTAGCTGCACTATTCcaaccatgagaaatatattaatagtcttcttttacagatgtagaaactgacacctaa--aagggtataat----acattgccca-----acacaacta----------ataaagggtaaag-ctggaa-----------------------acttaa--ccaaaatatt---ttatttctggagCACAAGTCTCAATGTTTAGAACAAATTT-----------TTATTGTTTAATGGCACGATGta--------------------------gt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74165102 284 + 122973662 GAATAAGAATTCTTTAAAAAGAAACAACGCAATTCCCAGATTTAACACCAACGCCAGTTAACATTTACCAAATGCATACACTGTGGCTGCACTATTCCAActatgagaaatatatgaatagtcttattttacagatgtagaaactgacacctaa--aagggtataat----agattgccca-----acacaacta----------ataaagggtaaag-ctggaa-----------------------ACTTAA--CGAAAATACG---TTATTTCTGGAGCACAAGTCTCAATGTTTAAAACAAATTT-----------TTGTTGTTTAATGGCATGATGCA--------------------------GT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29341204 284 + 172585720 GAAAAAGAATTCTTTAAAAAGAAACAATGCAATTCCCAGATTTAACACCAACGCCAGTTAACATTTACCGAATGCATACACTGTGGCTGCACTATTCCAActatgagaaatgcattaatagtcttattttacagatgtagaaactgacacctag--aagggtataat----acattgccca-----acacaacta----------ataaagagtaaag-ctggaa-----------------------acttaa--ccaaaatatg---TTATTTCTGGAGCACAAGTCTTAATGTTTAAAACAACTTT-----------TTGTTGTTTAATGGCATGATGCA--------------------------GT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29001802 284 - 170955103 GCAAAAGAATTCTTTAAAAAGAAACAATGCAATTCCCAGATTTAACACCAACGCCAGTTAACATTTACCGAATGCATACACTGTGGCTGCACTATTCCAActatgagaaatgcattaatagtcttattttacagatgtagaaactgacacctag--aagggtataat----acattgccca-----acacaacta----------ataaagagtaaag-ctggaa-----------------------acttaa--ccaaaatatg---TTATTTCTGGAGCACAAGTCTTAATGTTTAAAACAACTTT-----------TTGTTGTTTAATGGCATGATGCA--------------------------Gt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1979276 284 -   2996164 GAAAAAGAATTCTTTAAAAAGAAACAATGCAATTCCCAGATTTAACACCAACGCCAGTTAACATTTACCGAATGCATACACTGTGGCTGCACTATTCCAActatgagaaatgcattaatagtcttattttacagatgtagaaactgacacctag--aaaggtataat----acattgccca-----acacaacta----------ataaagagtaaag-ctggaa-----------------------acttaa--ccaaaatatg---TTATTTCTGGAGCACAAGTCTTAATGTTTAAAACAACTTT-----------TTGTTGTTTAATGGCATGATGCA--------------------------GT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1850953 284 -   2157725 GAAAAAGAATTCTTTAAAAAGAAACAATGCAATTCCCAGATTTAACACCAACGCCAGTTAACATTTACCGAATGCATACACTGTGGCTGCACTATTCCAActatgagaaatgtattaatagtcttattttacagatgtagaaactgacacctag--aagggtataat----acattgccca-----acacaacta----------ataaagagtaaag-ctggaa-----------------------ACTTAA--CCAAAATATA---TTATTTCTGGAGCACAAGTCTTAATGTTTAAAACAACTTT-----------TTGTTGTTTAATGGCATGATGCA--------------------------GT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28301232 284 -  71996105 GAAAAAGAATTCTTTAAAAAGAAACAATGCAATTCCCAGATTTAACACCAACGCCAGTTAACATTTACCGAATGCATACACTGTGGCTGCACTATTCCAActatgagaaatgtattaatagtcttattttacagatgtagaaactgacacctag--aagggtataat----acattgccca-----acacaacta----------ataaagagtaaag-ctggaa-----------------------acttaa--ccaaaatatg---ttatttctagagcacaagtcttaacGTTTAAAACAACTTT-----------TTGTTGTTTAATGGCATGATGCA--------------------------Gt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1979252 284 +   2316924 GAAAAAGAATTCTTTAAAAAGAAACAATGCAATTCCCAGATTTAACACCAAGGCCAGTTAACATTTACCGAATGCATACACTGTGGCTGCACTATTCCAActatgagaaatgtattaatagtcttattttacagatgtagaaactgacacctag--aagggtataat----gcattgccca-----acacaacta----------ataaagagtaaag-ctggaa-----------------------acttaa--ccaaaatatg---TTATTTCTGGAGCACAAGTCTTAATGTTTAAAACAACTTT-----------TTGTTGTTTAATGGCATGATGCA--------------------------GT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1859587 284 -   3067355 GAATAAGAATTCTTTAAAAAGAAACAATGCAATTCCCAGATTTAACACCAACGCCAGTTAACATTTACCGAATGCATACACTGTGGCTGCGCTATTCCAActatgagaaatgtattgatagtcttattttacagatgtagaaactgacacctag--aagggtataat----acattgccca-----acacaacta----------acaaagagtaaag-ctggaa-----------------------acttaa--ccaaaatatg---TTATTTCTGGAGCACAAGTCTTAATGTTTAAAACAACATT-----------TTGTTGTTTAATGGCATGATGCA--------------------------GT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171387712 272 - 171630274 GAATAAGAATTCTTT------AAACAATGCAATTCCCAGCTTTAACACCAATGCCAGTTAACA--CACTGAACGCATACACTGTGGGTGCACTATTCCAACTACCAGAAATATATTAATAGTCTTGTTTT----AGATGAAACACCGACCCTCA--AAGGGTGTAAT----GCATTGCACC-----ACACAACCA----------ATAAAGAGCAAAG-CTGGAA-----------------------ACTTAA--CCGAAATATC---TTATTTCTGGAGCACAAGTCTTAATGTTTAAAACAAATTT-----------TTATCGTTTGTTGGCTTGATACC--------------------------GT
i calJac3.chr4             I 331 C 0
s saiBol1.JH378348            214605 284 -    375362 GAGTAAGAATTCTTCAAAAAGAAACAATGCAATTCCCAGCTTTAACACCAATGCCAGTTAACATTTACTGAACGCATACACTGTGGGTGCACTATTCCAActacgagaaatatattaatagtgttgttttacagatataaaaaccgaaccctga--aagggtgtaat----gcattgcacc-----acacaacta----------acaaagagtaaag-ctagaa-----------------------acttaa--ccaaaatatg---TTATTTCTGGAGCACAAGTCTTAATGTTTAAAACCAATTT-----------TTGTTGTTTAATGGCTTGATACC--------------------------GT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      213478 284 -    373274 GAGTAAGAATTCTTTAAAAAGAAACAATGCAATTCCCAGCTTTAACACCAACACCAGTTAACATTTACTGAACGCATACACTGTGGGTGCACTATTCCAActacgagaaatatattaatagttttgttttacagatgtaaaaaccgacccctga--aagggtgtaat----gcattgcatc-----acacaacta----------ataaagagtaaag-ctggaa-----------------------acttaa--ccaaaatatg---ttatttctggagcacaagtcttaaTGTTTAAAACAAATTT-----------TTGTTGTTTAATGGCTTGATATC--------------------------AT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      152241 283 -    285216 GAATAAGGATTCTTTAAAAAGAAACAATGCAATTCCCAGCTTTAACATCAATGCCAGTTAACATTTACTGAACGCATACACTGTGGGTGCACTATTCCAActataagaaatgtattaacagtcttgttttacagatg-aaaaaccgacccctca--aagggtgtaat----gcattgcacc-----acacaacta----------ataaggagtaaag-ctggaa-----------------------acttaa--ccaaaatatg---TTATTTCTGGAGCACAAGTCTTAATGTTTAAAACAAATTT-----------TTGTTGTTTAATGGCTTGATACC--------------------------Gt
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1525897 346 -   2232465 GAATAACATTTCTTTAAAAAGAAACAATGTAATTCTTAGATTTAACAACAGCAGC--Tcaacacttactgaatgcataccctatgcctgcattatttcaactgt-agagatttatttatattcctattttacagatgtagaaactgatgcccaa--gaaggtataatttagagatttattt-----atatacctattttacagatgtagaaactgatgcctagaaggtataatttcttgccccaaactactcaaagtcaacaaatg---TTATTTTTGGAGCAC-AGTCTCAGTGTTTAAAACAAATTT-----------TAGTTGTTTATTGTCATGATACAGAGTTGTTTTTTTTTTTTTTGCTTTTGT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             19405 290 -    302817 GAATAACATTACTTAAGAAA-----AATGCAACACCTAGATTTAACA-CAGCAGCAGCAAACATTTACTGAATGCATGCACTATGCCTGCACTATTCCAACTATGAG----Ttattatcattcctattttatggatataaaaactgaggtccaaagaagggggtgat----ttcttgcccagaagtgtacaactc----------ataaggggtaaag-ttggaa-----------------------actgtg--tcaaaacatg---ctaattctggaactcagg-ctcAATG-TTAAAACAACTTTTTTCATTTTTGTTGCTGTTTATTGGCATGATGCA--------------------------GT
i dasNov3.JH561790         C 0 I 7082
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I

a score=209911.000000
s hg38.chr6_GL000254v2_alt    148458 20 +   4827813 GTGGTAAAATATATATAACA
s panTro5.chr6              29129594 20 + 175400573 GTGGTAAAATATATATAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29363933 20 + 173848474 GTGGTAAAATATATATAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5164133 20 +   6154872 gtggtaaaatatatataaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74165386 20 + 122973662 GTGGTAAAATATATATAACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29341488 20 + 172585720 GTGGTAAAATATATATAACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29002086 20 - 170955103 gtggtaaaatatatataaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1979560 20 -   2996164 GTGGTAAAATATATATAACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1851237 19 -   2157725 GTGGT-AAATATATATAACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28301516 20 -  71996105 gtggtaaaatatatataaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1979536 20 +   2316924 GTGGTAAAATATATATAACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1859871 20 -   3067355 GTGGTAAAATATATATAATA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171387984 20 - 171630274 GTGGTAAAATATATGTAACA
i calJac3.chr4             C 0 I 529
s saiBol1.JH378348            214889 20 -    375362 Ctggtaaaacatatgtaaca
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      213762 20 -    373274 Ctggtaaaatatatgtaaca
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      152524 20 -    285216 gtggtaaaacatatgtaaca
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1526243 20 -   2232465 GTGGTAAATTACATAACAAA
i otoGar3.GL873742         C 0 I 3
e dasNov3.JH561790             19695 7082 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I

a score=114975.000000
s hg38.chr6_GL000254v2_alt    148478 11 +   4827813 TAAAATGTCAC
s panTro5.chr6              29129614 11 + 175400573 TAAAATGTCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29363953 11 + 173848474 TAAAATGTCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5164153 11 +   6154872 taaaatgtcac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74165406 11 + 122973662 TAAAATGTCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29341508 11 + 172585720 TAAAATGTCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29002106 11 - 170955103 taaaatgtcac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1979580 11 -   2996164 TAAAATGTCAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1851256 11 -   2157725 TAAAATGTCAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28301536 11 -  71996105 taaaatgtcac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1979556 11 +   2316924 TAAAATGTCAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1859891 11 -   3067355 TAAAATGTCAC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            214909 11 -    375362 taaaatgtcac
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      213782 11 -    373274 taaaatgtcac
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      152544 11 -    285216 taaaatgtcac
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1526266 11 -   2232465 TAATTTGTCAT
i otoGar3.GL873742         I 3 C 0
e dasNov3.JH561790             19695 7082 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e calJac3.chr4             171388004 529 - 171630274 I

a score=66072.000000
s hg38.chr6_GL000254v2_alt    148489 6 +   4827813 TTTAAC
s panTro5.chr6              29129625 6 + 175400573 TTTAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29363964 6 + 173848474 TTTAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5164164 6 +   6154872 tttaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74165417 6 + 122973662 TTTAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29341519 6 + 172585720 TTTAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29002117 6 - 170955103 tttaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1979591 6 -   2996164 TTTAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1851267 6 -   2157725 TTTAAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28301547 6 -  71996105 tttaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1979567 6 +   2316924 TTTAAC
i manLeu1.NW_012104165v1   C 0 I 18
s colAng1.NW_012115566v1     1859902 6 -   3067355 TTTAAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171388533 5 - 171630274 -tttgt
i calJac3.chr4             I 529 C 0
s saiBol1.JH378348            214920 6 -    375362 tttaac
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      213793 6 -    373274 tttaac
i cebCap1.NW_016108108v1   C 0 I 3165
s aotNan1.NW_018494050v1      152555 6 -    285216 tttaac
i aotNan1.NW_018494050v1   C 0 I 2017
s otoGar3.GL873742           1526277 6 -   2232465 TTTAAC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             19695 7082 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I

a score=40864.000000
s hg38.chr6_GL000254v2_alt    148495 6 +   4827813 tttttt----
s panTro5.chr6              29129631 6 + 175400573 tttttt----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29363970 6 + 173848474 tttttt----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5164170 6 +   6154872 tttttt----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74165423 6 + 122973662 tttttt----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29341525 6 + 172585720 Tttttt----
i rheMac8.chr4             C 0 I 18
s macFas5.chr4              29002123 6 - 170955103 tttttt----
i macFas5.chr4             C 0 I 21
s macNem1.NW_012011356v1     1979597 6 -   2996164 tttttt----
i macNem1.NW_012011356v1   C 0 I 18
s cerAty1.NW_012001495v1     1851273 6 -   2157725 tttttt----
i cerAty1.NW_012001495v1   C 0 I 2365
s chlSab2.chr17             28301553 6 -  71996105 cttttt----
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012104165v1     1979591 6 +   2316924 tttttt----
i manLeu1.NW_012104165v1   I 18 I 1
s colAng1.NW_012115566v1     1859908 6 -   3067355 tttttt----
i colAng1.NW_012115566v1   C 0 I 2
s calJac3.chr4             171388538 6 - 171630274 tttttt----
i calJac3.chr4             C 0 I 4
s saiBol1.JH378348            214926 6 -    375362 catttt----
i saiBol1.JH378348         C 0 I 210
s otoGar3.GL873742           1526283 9 -   2232465 -CTTTTGGtt
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             19695 7082 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e aotNan1.NW_018494050v1      152561 2017 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I

a score=1041761.000000
s hg38.chr6_GL000254v2_alt    148501 166 +   4827813 tttttttttgagacagagttt--------------tgctttgtcg-ccag-gctggagtgcagtggcgcgatctgggctatctcggctcattgcaacctctgcctcccgggttcaagcgattctcctgcctcagtctcccgagtagctgcgagtacaggcgcatgccaccacgcccagctaa
s panTro5.chr6              29129637 163 + 175400573 tttttt---aagacagagttt--------------tgctttgtcg-ccag-gctggagtgcagtggcgcgatctgggctatctcggctcattgcaacctctgcctcccgggttcaagcgattctcctgcctcagtctcccgagtagctgccagtacaggcgcatgccaccacgcccagctaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29363976 162 + 173848474 ttttt----aagacagagttt--------------tgctttgtcg-ccag-gctggagtgcagtggcgcgatctgggctatctcggctcattgcaacctctgcctcccgggttcaagcgattctcctgcctcagtctcccgagtagctgccagtacaggcgcatgccaccacgcccagctaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5164176 164 +   6154872 ttttttt--gagacggagttt--------------tgctttgtcg-ccag-gctggagtgcagtggcgcgatctgggctatctcggctcattgcaacctctgcctcccgggttcaagtgattctcctgcctcagtctcccgagtagctgcgagtacaggcgcatgccaccatgcccagctaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74165429 165 + 122973662 tttttttt-gagacagagttt--------------tgctttgtcg-ccag-gctggagtgcagtggcgtgatctgggctatctcggctcattgcaacctccacctcccgggttcaaccgattatcctgcctcagtctcccgagtagctgggagtacaggcgcatgccaccacgcccagttaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29341549 166 + 172585720 tttttttttgggacagagtct--------------tgctctgtgg-ccag-gctggagtgcagtggcgcgatctcggctatctcggctcattgcaacctccgcctcctgggttcaagcgattctcctgcctcagtcttccgagtagctgggagtacaggcgcgtgccaccacgcccagctaa
i rheMac8.chr4             I 18 C 0
s macFas5.chr4              29002150 166 - 170955103 tttttttttgagacagagtct--------------tgctctgtgg-ccag-gctggagtgcagtggcgcgatctcggctatctcggctcattgcaacctccgcctcctgggttcaagcgattctcctgcctcagtcttccgagtagctgggagtacaggcgcgtgccaccacgcccagctaa
i macFas5.chr4             I 21 C 0
s macNem1.NW_012011356v1     1979621 166 -   2996164 tttttttttgagacagagtct--------------tgctctgtgg-ccag-gctggagtgcagtggcgcgatctcggctatctcggctcattgcaacctccgcctcctgggttcaagcgattctcctgcctcagtcttccgagtagctgggagtacaggcgcgtgccaccacgcccagctaa
i macNem1.NW_012011356v1   I 18 C 0
s chlSab2.chr17             28301560 166 -  71996105 tttttttttgagacagagtct--------------tgctctgtgg-ccag-gctggagtgcggtggcgcgatctcggctatctcggctcattgcaacctccgcctcctgggttcaagcgattctcctgcctcagtctcccgagtagctgggagtacaggcgcgcgccaccacgcccagctaa
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012104165v1     1979598 166 +   2316924 tttttttttgagacagagtct--------------tgctctgtgg-ccag-gctggagtgcagtggcgcgatctcggctatctcggctcattgcaacctccgcctcctgggttcaagcgattctcctgcctcagtctcccgagtagctgggagtacaggagcgtgccaccacgcccagctaa
i manLeu1.NW_012104165v1   I 1 I 2258
s colAng1.NW_012115566v1     1859916 180 -   3067355 tttttttttgagacagagtctgagacagagtcttgctctctgtgg-ccag-gctggagtgcagcggcgggatctcggctatctcggctcattgcaacctccgcctcctgggttcaagcgattctcctgcctcagtctcccaagtagctgggagtacaggcgcgtgccaccacgcccacccaa
i colAng1.NW_012115566v1   I 2 C 0
s calJac3.chr4             171388548 158 - 171630274 tttattttacagatggagttt--------------ccttctgtcgcccag-cccagagtgcaggggc---------actatcttgacccattgcaacctccacctcccagattcaagcgattctcctccctcagcctcgcaagtagctgggattacaagcacatgtcaccattcacagctaa
i calJac3.chr4             I 4 I 2
s saiBol1.JH378348            215142 158 -    375362 tttattttacagatggagtct--------------ccttctgttgcccag-cctggagtgcagtggc---------actatcttgactcattgcaacctccacctcccaggttccagcgatgctcctgcctcagcctcccgagtagctgggattacaggcacatgtcaccatgcacagctaa
i saiBol1.JH378348         I 210 C 0
s otoGar3.GL873742           1526292 158 -   2232465 ttttttttcaggataggatct--------------cactgtgttg-cttgaactacagggcagtggt---------gtcctcatagctcaatgcaacctcaaacttctgggtttaagggatcttcctgcctcagcctgaagaatagctaggaccataggcttgaacaattatgcctggctaa
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             19695 7082 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e aotNan1.NW_018494050v1      152561 2017 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e cerAty1.NW_012001495v1     1851279 2365 -   2157725 I

a score=805877.000000
s hg38.chr6_GL000254v2_alt    148667 152 +   4827813 ttttttctactttta---------gtagagacggggtttcactgtgttagccaggatggtctccatctcctgacctcgtgatcc-acccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcacccagccCTTGTTTTGGCATTTTAAAG
s panTro5.chr6              29129800 152 + 175400573 ttttttctactttta---------gtagagacggggtttcactgtgttaaccaggatggtctccatctcctgacctcgtgatcc-acccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcacccagccCTTGTTTTGGCATTTTAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29364138 152 + 173848474 ttttttctactttta---------gtagagacggggtttcactgtgttaaccaggatggtctccatctcctgacctcgtgatcc-acccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcacccagccCTTGTTTTGGCATTTTAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5164340 151 +   6154872 ttttttctactttta---------gtagagac-gggtttcactgggttagccaggatggtctccatctcctgacctcgtgatcc-acccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcacccagccCTTGTTTTGGCATTTTAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74165594 152 + 122973662 ttttttgtaatttta---------gtagagacggggtttcactatgttagccaggatggtctccatctcctgacctcgtgatcc-acccaccttggcctcccaaagtgctgggattacaggcgtgagccaccgcacctggccCTTGTTTTGGTATTTTAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29341715 152 + 172585720 ttttttgtattttta---------gtagagacggggtttcactgtgttagccaggaaggtccccatctcctgacctcgtgatcc-actcgcctcggccccctaaagtgctgggattacaggcgtgagccactgcgcccggcGCTTGTTTTGGTATTTTAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29002316 136 - 170955103 ttttttgtattttta---------gtagagacggggtttcactgtgttagccaggaaggtccccatctcctgacctcgtgatcc-acccgcctcggccccctaaagtgctgggat----------------tgcGCCCGGCGCTTGTTTTGGTATTTTAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1979787 152 -   2996164 ttttttgtattttta---------gtagagacggggtttcactgtgttagccaggaaggtccccatctcctgacctcgtgatcc-acccgcctcggccccctaaagtgctgggattacaggcgtgagccactgcgcccggcGCTTGTTTTGGTATTTTAAAG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28301726 152 -  71996105 ttttttgtattttta---------gtagagacggggtttcactgtgttagccaggaaggtccccatctcctgacctcgtgatcc-acccgcctcggccccccaaagtgctgggattgcaggcgtgagccactgcgcccggcGCTTGTTTTGGTATTTTAAAG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1860096 152 -   3067355 gtttttgtattttta---------gtagagacggggtttcactgtgttagccaggaaggtctccatctcctgacctcttgatcc-acccgcctcagcctcccaaagtgctggggttacaggcgtgagccaccgcgccaggccCTTGTTTTGGTATTTTAAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171388708 147 - 171630274 ttttttgtactttta---------gtagagatggagtttccccatgttagctaggatggtctcgatctcctgaccttgtgatctgggccccctcagcctcccaaagtgctggcattacaggggtgagcca------ccAGCCTCTGCTTTTGTATTTTAAAG
i calJac3.chr4             I 2 C 0
s saiBol1.JH378348            215300 147 -    375362 ttttttgtagtttta---------gtagagatggggtttcaccatgttagccaggatggtcttgatctcctgaccttgtgatctgggccccctcagcctcccaaattgctggtattacagtggtgagcca------ccAGCCCCTGTTTTTGTATTTTAAAG
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1526450 149 -   2232465 ttttttaaagttttatttgttttggtaaagaccaaatcttgctatactgcccaggttggcctcaagct------------atct-gctagccattgcctctcaaagtgctaggattacaggagtgaggcaccatgtccagcTCTcatttcaaccattttaag
i otoGar3.GL873742         C 0 I 124
e dasNov3.JH561790             19695 7082 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e aotNan1.NW_018494050v1      152561 2017 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e manLeu1.NW_012104165v1     1979764 2258 +   2316924 I
e cerAty1.NW_012001495v1     1851279 2365 -   2157725 I

a score=1239383.000000
s hg38.chr6_GL000254v2_alt    148819 234 +   4827813 AGACAGGGTCTCATTctcactgcagtcttgaactcctgggctcaaagaatcctcctgcctcagcctcccgtgtaacttaaactacagtcatgtgtcacaacacctggctaatttttaa-ttttttgtagagatgtggggggcagcatggactcaccatgttactcaagctggttttgaactcctggtctcaagcaatcctcctgccttgacttcccaaagtccttggattacagg
s panTro5.chr6              29129952 234 + 175400573 AGACAGGGTCTCATTctcaccgcagtcttgaactcctgggctcaaagaatcctcctgcctcagccttccgtgtaactaaaactacagtcatgtgtcacaacacctggctaatttttaa-ttttttgtagagatgtggggggcagcatggtctcaccatgttacccaagctggttttgaactcctggtctcaagcaatcctcccgccttgacctcccaaagtcctcggattacagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29364290 234 + 173848474 AGACAGGGTCTCATTctcaccgcagtcttgaactcctgggctcaaagaatcctcctgcctcagccttccgtgtaactaaaactacagtcatgtgtcacaacacctggctaatttttaa-ttttttgtagagatgtggggggcagcatggtctcaccatgttacccaagctggttttgaactcctggtctcaagcaatcctcccgccttgacctcccaaagtcctcggattacagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5164491 234 +   6154872 AGACAGGGTCTCATTctcaccgcagtcttgaactcctgggctcaaagaatcctcctgcctcagcctcccgcgtaactaaaactacagtcatgtgtcacaacacctggctaatttttaa-ttttttgtagagatgtggggggcagcatggtctcaccatgttacccaagctggttttgaactcctggtctcaagcaatcctcccgccttgacctcccaaagtccttggattacagg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74165746 234 + 122973662 AGACAGGGTCTCATTctcaccgcagtcttgaagtcctgggctcaaagaatcctcctgcctcagcctctcgtgtaactaaaactacagtcatgtgtcacaacacatggctaatttttaa-ttttttgtagagatgtggcaggcagcatggtctcaccatgttacccaagctggttttgaactcctgatctcaagcaatcctcctgccttgacgtcccgaagtccttggattacagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29341867 232 + 172585720 AAACAGGGTCTCATTctcatcgcagtctcaaacccctgggctcaaaggatcctcctgcctcagcctcccgtgtaactaagact--agtcatgtgtcacaacacatggctaatttttaa-ttttttgtagagatgtagggggcagcgtggtctcaccatgttacccaagctggttttgaactcctggtctcaagcaatcctcccgccttgacctcccaaagtgcttggattacagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29002452 232 - 170955103 AAACAGGGTCTCATTctcatcgcagtctcaaacccctgggctcaaaggatcctcctgcctcagcctcccgtgtaactaagact--agtcatgtgtcacaacacatggctaatttttaa-ttttttgtagagatgtagggggcagcgtggtctcaccatgttacccaagctggttttgaactcctggtctcaagcaatcctcccgccttgacctcccaaagtgcttggattacagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1979939 232 -   2996164 AAACAGGGTCTCATTctcatcgcagtctcaaacccctgggctcaaaggatcctcctgcctcagcctcccgtgtaactaagact--agtcatgtgtcacaacacatggctaatttttaa-ttttttgtagagatgtagggggcagcgtggtctcaccatgttacccaagctggttttgaactcctggtctcaagccatcctccggccttgatctcccaaagtgcttggattacagg
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28301878 233 -  71996105 AAACAGGGTCTCATTctcatcgcagtctcaaacccctgggctcaaaggatcctcctgcctcagcctcccgtgtaactaagact--agtcatgtgtcacaacacatggctaatttttaatttttttgtagagatgtagggggcagcgtggtctcaccatgtcacccaagctggttttgaactcctggtctcaagcaatcctcctgccttgacctcccaaagtgcttggattacagg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1860248 232 -   3067355 AGACAGGGTCTCATTctcatcgcagtctcaaacccctgggctcaaaggctcctcctgcctcagcctcccgtggaactaagact--agtcatgtgtcacaacacatggctaatttttaa-ttttttgtagagatgtggggggcagcgtggtctcaccatgttacccaagctggttttgaactcctggtctcaagcagtcctccctccttgacctcccaaagtgcttggattacagg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171388855 231 - 171630274 AGACAGGATATCATTctcactgcagtctagaactcct-ggcgcaaaggatcctcctaccccagcctgccaagtatgtaacattatagtcatgtgtgatgacacatggctaatttttaa-ttttttgtcgagatttgggggtcaatgtggtctcatcatgttacccaagctggttttgaactcctggtctcaggcaatcctcctgccttgacctcccaaagcgcttgcattata--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            215447 232 -    375362 AGACAGGATATCATTctcactgcagtctagaactcctgggctcaaaggatcctcctgccccagcctgccgagtatctaagattatagtcatatgtgacgacacatggctgatttttaa-ttttttgttgagatttgggtgtcagcgtggtctcaccatgttacccaagctggttttgaactcctagtctcaagcaatcctcctgccttgacctctcaaa--gcttgcattatagg
i saiBol1.JH378348         C 0 C 0
e dasNov3.JH561790             19695 7082 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e otoGar3.GL873742           1526599 124 -   2232465 I
e aotNan1.NW_018494050v1      152561 2017 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e manLeu1.NW_012104165v1     1979764 2258 +   2316924 I
e cerAty1.NW_012001495v1     1851279 2365 -   2157725 I

a score=897410.000000
s hg38.chr6_GL000254v2_alt    149053 164 +   4827813 catgagccTCAGCCCC---TCaccttt-----------tgtcttttt---gaaatcgcctattctagatatttcatataagtggagttatacagtacttgtgtcctttcatacctagcctatttcatcactaagcaaaatgttttcaagtttcatccatctcacagcatataccagcatat
s panTro5.chr6              29130186 164 + 175400573 catgagccTCAGCCCC---TCaccttt-----------tgtcttttt---gaaatcgcctattctagatatttcatataagtggagttatacagtacttgtgtcctttcatacctagcctatttcatcactaagcaaaatgttttcaagattcatccatctcacagcatataccagcatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29364524 164 + 173848474 catgagccTCAGCCCC---TCaccttt-----------tgtcttttt---gaaatcgcctattctagatatttcatataagtggagttatacagtacttgtgtcctttcatacctagcctatttcatcactaagcaaaatgttttcaagattcatccatctcacagcatataccagcatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5164725 163 +   6154872 catgagccTCAGCCTC---TCACC-tt-----------tgtcttttt---gaaatcgcctattctagatatttcatataagtggagttatacagtacttgtgtcctttcatacctagcctatttcatcactaaacaaaatgttttcaagattcatccatctcacagcatataccagcatat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74165980 162 + 122973662 catgagccTCAGCCCC---TCaccttt-----------tgtcttttt---gaaatcgcctattctagatatttcatataagtgaagttatacattacttgtgtcctttcgtatctagcctatttcatcactaagcaaaatgttttcaagattcatccatct--cagcatataccaacatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29342099 164 + 172585720 catgagccacagcccc---TCACTTtt---------tctgtcttttt---gaaatcgcctattctagatatttcatataagtagagttatacagtact--tgtctttttgtatctggctcatttcatcactaaacaaaatgttttcaagattcatccatctcacagcatgtaccagcatat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29002684 164 - 170955103 catgagccacagcccc---TCACTTtt---------tctgtcttttt---gaaatcgcctattctagatatttcatataagtgaagttatacagtact--tgtctttttgtatctggcccatttcatcactaaacaaaatgttttcaagattcatccatctcacagcatgtaccagcatat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1980171 164 -   2996164 catgagccacagcccc---TCACTTtt---------tctgtcttttt---gaaatcgcctattctagatatttcatataagtggagttatacagtact--tgtctttttgtatctggcccatttcatcactaaacaaaatgttttcaagattcatccatctcacagcatgtaccagcatat
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28302111 164 -  71996105 catgagccacagcccc---TCACCTtt---------tctgtcttttt---gaaatcgcctattctagatatttcatataagtggagttatacagtact--tgtctttttgtatctggcccatttcatcactaaacaaaatgttttcaagattcatccatctcacagcatataccagcatat
i chlSab2.chr17            C 0 I 367
s colAng1.NW_012115566v1     1860480 163 -   3067355 catgagccacagcccc---TCACCTtt---------tctgta-tttt---gaattcgcctattctagatatttcacataagtggaattatacagtact--tgcctttttgtatctggcctatttcatcactaaacaaaatgttttcaagattcatccatctcacagcatataccagcatat
i colAng1.NW_012115566v1   C 0 I 1626
s calJac3.chr4             171389086 137 - 171630274 ---------------------------------------gtcttttt---gaaatcacctattctagattcttcacataagtggagttaaacagtact--tgtccctttgtatctggcctatttcatcaccaagcaaaatgttttcaagattcatccacctcacagcatatatcagcataa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            215679 167 -    375362 cacgagccacagcacc---TCACTTtt---------tctgtcttttcagaaaaatcacctattctggatatttcacataagtggagttaaacagtact--tgtccctttgtatctggcctatttcatcaccaagcaaaacgttttcaagattcacccacctcacagcatatatcagcgtgt
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1526723 172 -   2232465 cctttacctcaacccctagttacctctaatctactttctgtc-ttca---gaaattgcctattctagagatttcacacaagtggaattatacaatatt--tgtccttttgtatctagcctatt---tcacttagcaaaatgttttcaaaattcatctatgctgccccatgtatcagaattt
i otoGar3.GL873742         I 124 I 1
e dasNov3.JH561790             19695 7082 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e aotNan1.NW_018494050v1      152561 2017 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e manLeu1.NW_012104165v1     1979764 2258 +   2316924 I
e cerAty1.NW_012001495v1     1851279 2365 -   2157725 I

a score=26210.000000
s hg38.chr6_GL000254v2_alt    149217 9 +   4827813 atcccatat
s panTro5.chr6              29130350 9 + 175400573 atcctatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29364688 9 + 173848474 atcctatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5164888 9 +   6154872 atcctatag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74166142 9 + 122973662 atcctatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29342263 9 + 172585720 ctctcatat
i rheMac8.chr4             C 0 I 1668
s macFas5.chr4              29002848 9 - 170955103 ctctcatat
i macFas5.chr4             C 0 I 5
s macNem1.NW_012011356v1     1980335 9 -   2996164 ctctcatat
i macNem1.NW_012011356v1   C 0 I 2216
s calJac3.chr4             171389223 9 - 171630274 atcctatat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            215846 9 -    375362 atcctatat
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1526896 9 -   2232465 atttctttt
i otoGar3.GL873742         I 1 C 0
e dasNov3.JH561790             19695 7082 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e aotNan1.NW_018494050v1      152561 2017 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e colAng1.NW_012115566v1     1860643 1626 -   3067355 I
e manLeu1.NW_012104165v1     1979764 2258 +   2316924 I
e chlSab2.chr17             28302275 367 -  71996105 I
e cerAty1.NW_012001495v1     1851279 2365 -   2157725 I

a score=52418.000000
s hg38.chr6_GL000254v2_alt    149226 39 +   4827813 --tgtatgtata---ttcattt--------------tttaaaatttcttatattttga
s panTro5.chr6              29130359 39 + 175400573 --tgtatgtata---ttcattt--------------tttaaaatttcttatattttga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29364697 39 + 173848474 --tgtatgtata---ttcattt--------------tttaaaatttcttatattttga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5164897 38 +   6154872 --tgtatgtata---ttca-tt--------------tttaaaatttcttatattttga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74166151 42 + 122973662 --tgtatgtatattcttcattt--------------taaaaatttttttatattttga
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29002862 39 - 170955103 --tatatatata---tatattt--------------ttttttttttttttttttttga
i macFas5.chr4             I 5 I 1538
s calJac3.chr4             171389232 56 - 171630274 --tgtatgtatagccttcattttgtttatTTTTGTATTTTGTATTTTTTCTGTTTTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            215855 56 -    375362 --tgtatgtatagtcttcattttgtttatttttgtatttttcattttttctgttttga
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1526905 44 -   2232465 tatgatcaaatactattctatt--------------gtatgtatttactacattttgt
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             19695 7082 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e aotNan1.NW_018494050v1      152561 2017 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e colAng1.NW_012115566v1     1860643 1626 -   3067355 I
e manLeu1.NW_012104165v1     1979764 2258 +   2316924 I
e chlSab2.chr17             28302275 367 -  71996105 I
e cerAty1.NW_012001495v1     1851279 2365 -   2157725 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I
e rheMac8.chr4              29342272 1668 + 172585720 I

a score=42966.000000
s hg38.chr6_GL000254v2_alt    149265 28 +   4827813 tgcctattctgcttacgcagttttattt
s panTro5.chr6              29130398 28 + 175400573 tgcctattctgcttatgcagttttattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29364736 28 + 173848474 tgcctattctgcttacgcagttttattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5164935 28 +   6154872 tgcctattctgcttacgcagttttattt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74166193 28 + 122973662 tgcctattctgcttatgcatctttattt
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171389288 28 - 171630274 TACCTATTCTGCTTATGCATTTTTGTTT
i calJac3.chr4             C 0 I 2277
s saiBol1.JH378348            215911 28 -    375362 aacctattctgcttatgtatttttgttt
i saiBol1.JH378348         C 0 I 8
s otoGar3.GL873742           1526949 17 -   2232465 ---ttatttttatt------ttttac--
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             19695 7082 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e aotNan1.NW_018494050v1      152561 2017 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e colAng1.NW_012115566v1     1860643 1626 -   3067355 I
e manLeu1.NW_012104165v1     1979764 2258 +   2316924 I
e chlSab2.chr17             28302275 367 -  71996105 I
e cerAty1.NW_012001495v1     1851279 2365 -   2157725 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I
e macFas5.chr4              29002901 1538 - 170955103 I
e rheMac8.chr4              29342272 1668 + 172585720 I

a score=840333.000000
s hg38.chr6_GL000254v2_alt    149293 641 +   4827813 ttgttattttgcttatctgctcatctgttgatggctggattctccttctagctattatgaatgatgctgcaaagaacattggattacaaggatctgtttgagtctctgctttcaattcttttgggtatacacct------agaattgctaagtcatatgctacacccatgtttagctttttaagggaaccaccaaaccggtttccacagtggctttatcattttacattctcaccaacaatgcatg-aaagttccagtttatccacatcttcaccaacactttttcattggccattttcctgattatagccatccaagaaagttggaaatggtaccctactttggttttgatttgcatttcccctagtgaataaa--cacagagta-ctttccaagtgcttattgcctatttacatattttgtttggagaggtgtctatttgagttctttgtgca----tttaaactgagttgccttgttgattttcagtt---ctaaggtttg--------------------------gttttt--gtttttttggatatatctggatgttagacccttatcaaacatgtaatttccaagacattttcaccaattctatgtgctcttttaacactgcc----taacgtcctttgatgcacaaaagtttc---ttttgattaaattccatttatcATCTA--------------------tt
s panTro5.chr6              29130426 633 + 175400573 ttgttattttgcttatctgctcatctgctgatggctggattctccttttagctattatgaataatgctgcaaagaacattggattacaaggatctgtttgagtctctgctttcaattcttttgggtatacacct------agaattgctaagtcatatgctacacccatgtttagctttttaagggaaccaccaaaccggtttccacagtggctttatcattttacattctcaccaacaa----------gttccggtttatccacatcttcaccaacactttttcattggccattttcctgattatagccatccaagaaagtttgaaatggtaccctactttggttttgatttgcatttccc-tagtgaataaagacacagagta-ctttccaagtgcttattgcctatttacatactttgtttggagaggtgtctatttgaattctttgtgca----tttaaactgatttgccttgttgattttcagtt---ctaaggtttg--------------------------gttttt--gtttttttggatatatctggatgttagacccttaccaaacatgtgatttccaagacattttcaccaattctatgtgctcttttaacactgtc----taatgtcctttgatgcacaaaagtttc---ttttgattaaattccatttatcATCTA--------------------tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29364764 642 + 173848474 ttgttattttgcttatctgctcatctgctgatggctggattctccttttagctattatgaataatgctgcaaagaacattggattacaaggatctgtttgagtctctgctttcaattcttttgggtatacacct------agaattgctaagtcatatgctacacccatgtttagctttttaagggaaccaccaaaccggtttccacagtggctttatcattttacattctcaccaacaatgcatg-aaagttccggtttatccacatcttcaccaacactttttcattggccattttcctgattatagccatccaagaaagtttgaaatggtaccctactttggttttgatttgcatttccc-tagtgaataaagacacagagta-ctttccaagtgcttattgcctatttacatactttgtttggagaggtgtctattcgaattctttgtgca----tttaaactgatttgccttgttgattttcagtt---ctaaggtttg--------------------------gttttt--gtttttttggatatatctggatgttagacccttaccaaacatgtgatttccaagacattttcaccaattctatgtgctcttttaacactgtc----taatgtcctttgatgcacaaaagtttc---ttttgattaaattccatttatcATCTA--------------------tt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5164963 641 +   6154872 ttgttattttgcttatctgctcatctgttgatggctggattctccttttagctattatgaataatgctgcaatgaacattggattacaaggatctgtttgagtctctgctttcaattcttttgggtatacacct---aggagaattgctaagtcatatgctaaacccatgtttagctttttaagggaaccaccaaaccggtttccacagtggctttatcattttacattctcaccaacaatgcatg-aaagttccggtttatccacatcttcaccaacactttttcattggccattttcctgattatagccatccaagaaagtttgaaatggtaccctactttggttttgatttgcatttccc-tagtgaataaagacacagagta-ctttccaagtgcttattgcctatttacatattttgtttggagaggtgtctatttgaattctttgtgca---ttttaaactgagttgccttgttgattttgtgtt---ctaaggtttg--------------------------gttttt--gtttttttggatatatctggatgttaga-ccttatcaaacatgtgatttccaagacattttcaccaattctatgtgctc--ttaacact--c----taatgtcctttgatgcacaaaagtttc---ttttgatgaaattccatttatcATCTA--------------------tt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74166221 638 + 122973662 ttgttattttgctcatctgctcatctgttgatggctggattctccttttagctattatgaataacgctgcaatgaacattggattacaagtatctgtttgagtctctgctttcaattcttttcggtatacacct------agaattgctaagtcatatggtaaacccatgtttagcttttta--ggaaccaccaaactggtttccacagtgactttatcattttacattctcaccaacaatgcatg-aaagttccagtttatccacatcttcaccaacactttttcatttgccattttcctaattatagccatccaagaaagtttgaaatggtaccccactttggttttgatttgcatttccc-tagtg-ataaa--gacagagta-ctttccatatgcttattagctatttatatattttctttggagaggtgtctatttgaattctttgcacatttttttagactgggttgctttttcagtt----gta---ttaaggtttg--------------------------tgttttgcgttttttggggtatatctggatgttacacccttatcaagtgtctgatttgtaaaac--tgtcaccaattctatatgctcttttaacactgtc----taatgtcctttgatgcac--aagtttccaattttgatgaaattccatttatcATCTA--------------------tt
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378348            215947 694 -    375362 ttgttattttgcttatctgttcatctgttgatggctggat--tccctttagctattatcgataatgctgcaatgaacattggattacaagta--tgtttgagtctctgctttcaattctt-----tatacacctatgagtagaattgctgagtcatatgctaaatccgtgtttagctttttga-ggaaccactaaactggtttccatagtggctttatcattttacattctcaccaacaatacaggaaaagttccaattcatccacatcctcaccagcac-tttgcatatgccattttcctaatt-ttgccatccaagaaagtaagaaatggtaccccatgctggttttaacttgcatttccc-tagtcagtgaagatactgagta-cttcctgtgtgcttcttgggtatttacaaattttctttggagaggtgtccattggagttctttgtgca-tttgttaaattgggttatctttttgtttgtgagttgtattaaggtttggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgt--gtgttttggcatat-tctggatgttagaccctcatcaaatatgtgatttgtaa-atattttcaccaattctctatgctctcttttcactgtctggataatgtcctttgatgaacaaaagtttttaattttgatgaaatatcatttatcatctatttctttgtGGGGttttttttt
i saiBol1.JH378348         I 8 C 0
s otoGar3.GL873742           1526966 611 -   2232465 ttgttattttgtttatccattcttgtgttgatggctggattccacatttggctattgcaaatactactgcaatgaacattagggtacaagtatctgtctatgtcgctgctttccatttttttagacatatgtctaggaggagaattgctgggttatgtggttaatttattcatagctttttg--ggaaccattaaactggtttctataatggctttcccattttagattctcaccaacaatgtaca-aatatttcaatttctccacatcctcagcaatac-ttcttattttcccttttcttacttatatctatcctagaaagtatgaaatggtacc----------------------------tcatgaataatgatgttgagcatttttccatgtgtatattggctatttgtatatcttcttttgagagatgtctatttgag-tctttgttca--tttttaaattgggttttctttttgtttttgagtt---------------------------------------gtatga--gtttttt--aatat-cctggatgttaaaaccttatcagttatgtgatttgtaa---atttttttgaattctataggttgtcttttcaccttttggataatgtcctcttatgtgcaaaaacttttaattttgactaagtacaatttttcacttt--------------------tt
i otoGar3.GL873742         C 0 I 3716
e dasNov3.JH561790             19695 7082 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e aotNan1.NW_018494050v1      152561 2017 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e calJac3.chr4             171389316 2277 - 171630274 I
e colAng1.NW_012115566v1     1860643 1626 -   3067355 I
e manLeu1.NW_012104165v1     1979764 2258 +   2316924 I
e chlSab2.chr17             28302275 367 -  71996105 I
e cerAty1.NW_012001495v1     1851279 2365 -   2157725 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I
e macFas5.chr4              29002901 1538 - 170955103 I
e rheMac8.chr4              29342272 1668 + 172585720 I

a score=127118.000000
s hg38.chr6_GL000254v2_alt    149934 106 +   4827813 tgttgtctttcagatggagct----gtcacccaggctggaatgcagtggcatgatctaagctcactgcagcctctacctccaggttcaaataatttttctgcctcagcct
s panTro5.chr6              29131059 110 + 175400573 tgttgtctttcagatggagctcattgtcgcccaggctggaatgcagtggcatgatctaagctcactgcagcctctacctccaggttcaaataatttttctacctcagcct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29365406 110 + 173848474 tgttgtctttcagatggagctcattgtcgcccaggctggaatgcagtggcatgatctaagctcactgcagcctctacctccaggttcaaataatttttctgcctcagcct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5165604 110 +   6154872 tgttgtctttcagatggagctcattgtcgcccaggctggaatgcagtagcatgatctgagctcactgcagcctctacctccaggttcaaataatttttctgcctcagcct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74166859 110 + 122973662 tgttgtcttcgagatggagctcactgttgcccaggctggaatgcagtggcatgatctaagctcactgcaacctctgcctcaagattcaagtaattttcctgcctcagcct
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378348            216641 110 -    375362 ttttttttttgagatgaaactcactctcaccccagctggactgcagtggcaggatcttggctcactgcaacctctgcctccaggttcaagcaattctccggccttagcct
i saiBol1.JH378348         C 0 I 187
e dasNov3.JH561790             19695 7082 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      152561 2017 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e calJac3.chr4             171389316 2277 - 171630274 I
e colAng1.NW_012115566v1     1860643 1626 -   3067355 I
e manLeu1.NW_012104165v1     1979764 2258 +   2316924 I
e chlSab2.chr17             28302275 367 -  71996105 I
e cerAty1.NW_012001495v1     1851279 2365 -   2157725 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I
e macFas5.chr4              29002901 1538 - 170955103 I
e rheMac8.chr4              29342272 1668 + 172585720 I

a score=283897.000000
s hg38.chr6_GL000254v2_alt    150040 370 +   4827813 Ggtgtccagaattggtgggttcttggtttcactgacttcaaacatgaagctgcagaccctcgtg-----atgttattttttaaagacagtgtggctggagtttgttctttctgatgttcacccatgttctgagtttcttcccgctggtgggttcctggtctggctggcttacaaggagcgaaacatgcagaccttcagcataagtgtt-gcaactcttaagatgatatgtctgaagttgttcatttctcctgatgcgctcatggttcttgccggtctcaggagtgaaaccgcaaatcttcacggtaagtgtt-acagctcacacaggaaatacaaacctcaaaaagcaagcagcagcaaaatttattacaaagaaca
s panTro5.chr6              29131169 370 + 175400573 Ggtgtccagaattggtgggttcttggtttcactgacttcaaacatgaagctgcagaccctcgtg-----atgttattttttaaagacagtgtggctggagtttgttctttctgatgttcacccatgttctgagtttcttcccgctggtgggttcctagtctggctggcttacaaggagcgaaacatgcagaccttcagcataagtgtt-gcaactcttaagatggtatgtctgaagttgttcatttctcttgatgcactcatggttcttgccggtctcaggagtgaaaccgcaaatcttcacagtaagtgtt-acagctcacacaggaagtgcaaacctcaaaaagcaagcagaagcaaaatttattacaaagaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29365516 370 + 173848474 Ggtgtccagaattggtgggttcttggtttcactgacttcaaacatgaagctgcagaccctcgtg-----atgttattttttaaagacagtgtggctggagtttgttctttctgatgttcacccatgttctgagtttcttcccgctggtgggttcctagtctggctggcttacaaggagcgaaacatgcagaccttcagcataagtgtt-gcaactcttaagatggtatgtctgaagttgttcatttctcctgatgcactcatggttcttgccggtctcaggagtgaaaccgcaaatgtttacagtaagtgtt-acagctcacacaggaagtgcaaacctcaaaaagcaagcagaagcaaaatttattacaaagaaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5165714 370 +   6154872 cgtgtccagaattggtgggttcttggtttcactgacttcaagcatgaagctgcagaccctcgtg-----atgttattttttaaagacagtgtggctggagtttgttgtttctgatgttcacccatgttctgagtttcttcccgctggtgggttcctggtctggctggcttacaaggagcgaaacatgcagaccttcagcataagtgtt-gcaactcttaagatggtatgtctgaagttgttcatttctcctgatgcgctcatggttcttgccggtttcaggagtgaagctacaaatcttcacagtaagtgtt-acagctcacataagaagtgcaaacctcaaaaagcaagcaacagcaaaatttattacaaagaaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74166969 373 + 122973662 Agtgtccagaactagtgggttcttggtttcactgacttaaagaatgaagctacagatcctcatggttgaatcttaatttttaaag--agtgtgtctggagttggttccttctgatgttcatctgtgttttgagtttccccctactggtcggttcctagtctcactggcct-cacaaagtgaaacatgtagaccttcgtggtgagggtcaatgactcttaagacagtatgtctagaatggttcatttttctggatatgttcacagttcttgctagtctcaggagtaaagctgcagacctccactgtgagtgttaacagcttacacagaaagcacacacc-caaagcataagcagcagcaagatttattacaaagaaca
i nomLeu3.chr1a            C 0 I 609
e dasNov3.JH561790             19695 7082 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e saiBol1.JH378348            216751 187 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      152561 2017 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e calJac3.chr4             171389316 2277 - 171630274 I
e colAng1.NW_012115566v1     1860643 1626 -   3067355 I
e manLeu1.NW_012104165v1     1979764 2258 +   2316924 I
e chlSab2.chr17             28302275 367 -  71996105 I
e cerAty1.NW_012001495v1     1851279 2365 -   2157725 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I
e macFas5.chr4              29002901 1538 - 170955103 I
e rheMac8.chr4              29342272 1668 + 172585720 I

a score=363098.000000
s hg38.chr6_GL000254v2_alt    150410 671 +   4827813 taaagaacaaggtttccacaacagagagatcgactccgagtaggttatcgtggctgctccgcgcagcctgcttttattgccttatctggccccacccacattctgctgattggtccattttacagagagctgattggtctgttttacaaagaactgattagtctgttttgacagggtgctgattggtgtgtttacagtccctgagctagacacagagtgctgattggtgcatttacaatcctttagctagacataaaggttctccaggtccccactagagttgctagattcagagtgctgattggtgtatccacaaacccagagctagacacagagtgctgactggcacatatacaatcctctagctagccataaaagttgtccaagtccgcacccgcctcaagagcccagctggctttgcctagtggatcccgcactggggccacgggcggagctgcccgccagtcccgtgccacgcacctgcactcctcagcccttgggcggtcgatgggaccgggcgccgcggagcagggggcggcgcccatcagggagacttggaccgcaagggagcccacgggtgggagggtcgggggcgggctggggcatggcgaactgcaggtcccgtgccctgccccatgaggaggcggctgaggcccggcgagaattcgacc
s panTro5.chr6              29131539 671 + 175400573 taaagaacaaagtatccacaacacagagatcgattccgagtaagttaccgtggctgctccgggcagcctgcttttattgccttatctggccccacccacattctgctgattggtccattttacagagagctgattggtctgttttacaaagaaccgattagtctgttttgacagggtgctgattggtgtgtttacagtccctgagctagacacagagtgctgattggtgcatttacaatcctttagctagacataaaggttctccaggtccccactagatttgctagattcagagtgctgattggtgtatccacaaacccagagctagacacagagtgctgactggcacatatacaatcctctagctagccataaaagtagtccaagtccgcacccgccgcaagagcccagctggctttgcctagtggatcccgcactggggcgacgggcggagctgcccgccagtcccgtgccacgcacctgcactcctcagcccttgggcggtcgatgggaccgggcgctgcggagcagggggcagcgcccatcagggagacttggaccgtaaaggagcccacgggtgggagggtcgggggcgggctgcggcatggcgagctgcaggtcccgtgccctgccccatgaggaggcggctgaggcccggcgagaattcgacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29365886 671 + 173848474 taaagaacaaagtatccacaacagagagatcgattccgagtaagttaccgtggttgctccgggcagcctgcttttattgccttatctggccccacccacattctgctgattggtccattttacagagagctgattggtctgttttacaaagaaccgattagtctgttttgacagggtgctgattggtgtgtttacagtccctgagctagacacagagtgctgattggtgcatttacaatcctttagctagacataaaggttctccaggtccccactagatttgctagattcagagtgctgattggtgtatccacaaacccagagctagacacagagtgctgactggcacatatacaatcctctagctagccataaaagtagtcccagtccgcacccgcctcaagagcccagctggctttgcctagtggatcccgcactggggccacgggcggagctgcccgccagtcccgtgccacgcgcctgcactcctcagcccttgggtggtcgatgggaccgggcgctgcggagcagggggcagcgcccatcagggagacttggaccgtaaaggagcccacgggtgggagggtcgggggcgggctgcggcatggcgagctgcaggtcccgtgccctgccccatgaggaggcggctgaggcccggagagaattcgacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5166084 667 +   6154872 taaacaacaaaatatccataacagagagatcgattccgagcaggttaccggggctgctccgggcagcctgcttttattgccttatctggccccacccacattctgctgattggtccattttacagagagctgattggtctgttttacaaagaactgattagtctgttttgacagggtgctgattggtgtgtttacaatccctgagctagacacagagtgctgattggtgcatttacaatcctttagctagacataaaggttctccaggtccccactagatttgctagattcagagtgctgattggtgtatccacaaacccagagctagacacagagtgctgactggcacatatacaatcctctagctagccataaaa---gtccaagtccgcacccgcctcaagagcccaactggctttgcctagtggatcccgcactggggccacgggcggagctgtccgccagtcctgtgccacgcgcctgcactcctcagcccttgggtggtcgatgggacccggcaccgcggagcagggggcggcgcccatcagggagacttggaccgtaagggagcccacgggtgggagggtc-ggggcgggcaggggcatggcgagctgcaggtcccctgcgctgacccatgaggaggcggctgaggcccggcgagaattcgacc
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH561790             19695 7082 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e saiBol1.JH378348            216751 187 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      152561 2017 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e calJac3.chr4             171389316 2277 - 171630274 I
e colAng1.NW_012115566v1     1860643 1626 -   3067355 I
e manLeu1.NW_012104165v1     1979764 2258 +   2316924 I
e chlSab2.chr17             28302275 367 -  71996105 I
e cerAty1.NW_012001495v1     1851279 2365 -   2157725 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I
e macFas5.chr4              29002901 1538 - 170955103 I
e rheMac8.chr4              29342272 1668 + 172585720 I
e nomLeu3.chr1a             74167342 609 + 122973662 I

a score=835692.000000
s hg38.chr6_GL000254v2_alt    151081 1118 +   4827813 gcagcgcgggcggacgggcagtgctgggggacctggcgccccctccgcagctgctggctcagatgataagctcctcactacccgCGCTCaagacaccaatccgcactagctcatggtttgtggatgcaccaatcagcactctatctagctaacctggtggggacttggagaatctttaggtaagga-gtgtgaatacaccaatcggcactctgtatctagctaacctggtggggacttggagaatctttatgtcttgtagctaagg----------------------------------------------------------------------------------gtttgtgaatgcacctaatcagcactctgtatctagctcaaggtttgtaaacacaccaatcagcaccttgtgtctagttcagggtttatgaatgcaccagtcagcactctgtaactagttaacctggtggggacttggagaatgtttatgtctagctaagggattgtaaatacaccagtcagtaccctgtatttagctcaaggtttgtaaata----------cactttgcgtctagctcagggtttgtaaatacaccaatcacactctgtatctagctaatctagtggggacttggagaacttctgcgtctcgctcagggattgtaaacgcaccaatcagtaccctgccaaaacggaccaatcagctctctgtaaaatggaccaatcagcaggatgtgggtggggccagataagagtataaaagcaggctgcctgaac-ggtggtggctgtttggttaatgctttctccacgttgtggaaggtttgtttttttt--gctgtttgcaatgattcctgctgctgctcggtttttgcatgcgcattgcctttgtgggctgtgataattgctgtgaaagtct-gcagtttcattcctgaagcca--aggagaccataaactcactgagaggaaccaatgactccagacacaccgtcttaagagctg-taacagttactgccaagatt-ggtagctt---tcccgagtcag-cgaaaccacaaacccacctgaatggaatgaaactctgaacatatgcaaacatcagaatgaacaaattccccacacactgctcttcagaactgccacactcacggccagggtccatggcttcattcttgaagtcagtgagatcaa-gaacccaccaattccTTGGCACA
s panTro5.chr6              29132210 1115 + 175400573 gcagcgcgggcggatgggcagtgctgggggacctggcaccccctccgcagctcctggcccagatgataacctcctcactacccgTGCTCAAGAcaccaatccgcactagctcatggtttgtggatgcaccaatcagcactcta----gctaacctggtggggacttggagaatctttaggtaagga-gtgtgaatacaccaatcggcactctgtatctagctaacctggtggggacttggagaatctttatgtctagtagctaagg----------------------------------------------------------------------------------gtttgtgaatgcacctaatcggcactctgtatctagctcaaggtttgtaaacacaccaatcagcacctcatgtctagttcagggtttatgaatgcaccagtcagcactctgtaactagttaacctggtggggacttggagaatctttatgtctagctaagggattgtaaatacaccagtcagcaccctgtatttagctcaaggtttgtaaata----------cactttgcgtctagctcagggtttgtaaatacaccaatcacactctgtatctagctaatctagtggggacttgcagaacttttgcgtctcgctcagggattgtaaacgcaccaatcagtaccctgccaaaacggaccaatcagctctctgtaaaatggaccaatcagcaggatgtgggtggggccagataagagtataaaagcaggctgcctgagctggtggtggctgtttggttaatgctttctccacattgtggaaggtttgtttttttt--gctgtttgcaatgattcctgctgctgctcagtctttgcatgcgcattgcctttgtgggctgtgataattgctgtgaaagtct-gcagtttcattcctgaagcca--aggagaccacaaactcactgagaggaaccaatgactccagacacaccgtcttaagagctg-taacagttattgccacgatc-ggtagctt---tcccgagtcag-tgaaaccacgaacccacctgaatggaatgaaactctgaacatattcaaacatcagaatgaacaaattccccacacactgctcttcagaactgcaacactcatggccagggtccgtggcttcattcttgaagtcagtgagatcaa-gaacccaccaattccgtggcaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29366557 1201 + 173848474 gcagcacaggcggatgggcagtgctgggggacctagcaccccctccgcagctcctggcccagatgataacctcctcactacccgCGCTCaagacaccaatccacactagctcatggtttgtggatgcaccaatcagcactctatctagctaacctggtggggacttggagaatctttaggtaagga-gtgtgaatacaccaatcggcactctgtatctagctaacctggtggggacttggagaatctttatgtctagtagctaagggtttgtgaatgcacctaatcggcactctgaatctagctcacctggtggggacttggagaatctttatgtctagtagctaagggtttgtgaatgcacctaatcggcactctgtatctagctcaaggtttgtaaacacaccaatcagcacctcgtgtctagttcagggtttatgaatgcaccagtcagcactctgtaactagttaacctggtggggacttggagaatctttatgtctagctaagggattgtaaatacaccagtcagcaccctgtatttagctcaaggtttgtaaata----------cactttgcgtctagctcagggtttgtaaatacaccaatcacactctgtatctagctaatctagtggggacttgcagaacttttgcgtctcgctcagggattgtaaacgcaccaatcagtaccctgccaaaacggaccaatcagctctctgtaaaatggaccaatcagcaggatgtgggtggggccagataagagtataaaagcaggctgcctgagctggtggtggctgtttggttaatgctttctccacattgtggaaggtttgtttttttt--gctgtttgcaatgattcctgctgctgctcagtctttgcatgcgcattgcctttgtgggctgtgataattgctgtgaaagtct-gcagtttcattcctgaagcca--aggagaccacaaactcactgagaggaaccaatgactccagacacaccgtcttaagagctg-taacagttattgccacgatc-ggtagctt---tcccgagtcag-tgaaaccacgaacccacctgaatggaatgaaactctgaacatattcaaacatcagaatgaacaaattccccacacactgctcttcagaactgcaacactcatggccagggtccgtggcttcattcttgaagtcagtgagatcaa-gaacccaccaattccgtggcaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5166751 1129 +   6154872 gcagtgcgggcggacgggcagtgctgggggacctggcgccccctccgcagctgctggcccagatgataagctcctcactacctgCGCTCaagacaccaatccgcactagctcatggtttgtggatgcaccaatcagcactctctctagctaacctggtggggacttggagaatctttaggtaagga-gtgtgaatacaccaatcggcactctgtatctagctAACctggtggggacttggagaatctttatgtc---tagctaagg----------------------------------------------------------------------------------gtttgtgaatgcacctaatcggcactctgtatctagctcaaggtttgcaaacacaccaatcagcaccttgtgtctagttcagggtttatgaatgcaccagtcagcactctgtaactagttaacctggtggggacttggagaatctttatgtctagctaagggattgtaaatacaccagtcagcaccctgtatctagctcaaggtttgtaaatacaccaatcagcactctgcgtctagctcagggtttgtaaatacaccaatcacactctgtatctagctaatctagtggggacttggagaacttttgcgtctcgctcacggattgtaaacgcaccaatcagtaccctgccaaaacggaccaatcagctctctgtaaaatggaccaatcagcaggatgtgggtggggccagataagagtataaaggcaggctgcctgagcgggtggtggctgtttggttagtgctttctccacattgtggaaggtttgtttttttttagctgtttgaaatgattcctgctgctgctcagtgtttggatgcgcattgcctttgtgggctgtgataattgccgtgaaagtgt-gcagtttcattcctgaagcca--aggagaccataaactcactgagagaaaccaatgactccagacacatcctgtttagagctgttaacagttattgccaagatc-ggtagttt---tcccgagtcag-cgaaaacacaaacctacctgaatggaatgaaactctgaacatatccaaacgtcagaatgaacgaattccccacacactgctcttaagaactgcaacactcaccgccagggtccatggcttcattcttgaagtcagtgaggtcaa-gaacccaccaattccgtggcaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74167951 1054 + 122973662 gcggcgcaggcggacgggcagttc-gggggatctgg---------cgcagctgctggcccaggtgctaagcccctcactgcccgCgttcaa-----------------------agtctgtaaatacaccaatccgcaccgtg-----------------------------tgtctagctcaggatttgtggatgcaccagtcggcactctgtatctagctaacctggtggggacttggagaatctctatgtc---tagctaagg----------------------------------------------------------------------------------gattgtgaatgcacc-aattggcactctgtatctagctcaaggtttgtaaacacaccagtcagcaccctgtgtctagttcagggtttgtgaatgcaccaatcagcactctgtatctagttaatctggtggggactcggagaatctttatgtctagctaagggattgtaaatacaccagtcagcaccctgtatctagctcaaggtttgtaaatgcaccaatcagcactctgtgtctagctcagggtttgtaaatacaccaatc-tacactgtatctagctaatctagtggggacgtggagagcttttgcatctagctcaaggattgtaaacacaccaatcagtaccctgccaaaacagaccaatcagctctctgtaaaatggaccaatcagcaggatgtgggtggggccagataagagaataaaagtaggctgcccgagtctgcagcagtgatttgcttgggtctgttgccatgttgttgaagctttgttgtttt---gttctttgcaacaaatcctgctgatatttacagttggggtgaacagtacttttatgagct------------gtgaaggtctagcaatttcacttttgaagccggcattagattataaactcactgggaggaaaaaacaactctagatgcaccgctttaagagctg-taacagttaccacgaaaatctagtagcttgactcctgaattagcctaaactacgaacccacctgaaggaa--gaaa--ctaaacacatcctaacatcagaagggacaaattcccaacacgccacctttaagaactgcaacactcatggagagggtctgcatcttcattcttgaagtcagtgaggtcaatgaaccccccaattccg-gacacG
i nomLeu3.chr1a            I 609 C 0
e dasNov3.JH561790             19695 7082 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e saiBol1.JH378348            216751  187 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      152561 2017 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e calJac3.chr4             171389316 2277 - 171630274 I
e colAng1.NW_012115566v1     1860643 1626 -   3067355 I
e manLeu1.NW_012104165v1     1979764 2258 +   2316924 I
e chlSab2.chr17             28302275  367 -  71996105 I
e cerAty1.NW_012001495v1     1851279 2365 -   2157725 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I
e macFas5.chr4              29002901 1538 - 170955103 I
e rheMac8.chr4              29342272 1668 + 172585720 I

a score=40880.000000
s hg38.chr6_GL000254v2_alt    152199 45 +   4827813 TTAGGATCACAGGTGTTGAGCCACGGTTCCTGGATGCGTG-----------------GAGA-----T
s panTro5.chr6              29133325 57 + 175400573 TTAGGATCACAGGTGTTGAGCCACAGTTCCTGGATGCGTGAAGATTTCTCTC-----GAGA-----T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29367758 57 + 173848474 TTAGGATCACAGGTGTTGAGCCACAGTTCCTGGATGCGTGAAGATTTCTCTC-----GAGA-----T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5167880 59 +   6154872 TTAGGATCACAGGTGTTGAGCCACAGTTCCTGGATGCGTGAAGATTTCTCTC---AAGAGA-----T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74169005 67 + 122973662 TAGGGATCACAGGTGTTGAGCCACTGATCCCAGCTGTGTGAAGATTTATCTCTCCTAAAGAGTTTTT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29004439 44 - 170955103 ttgggatcacaggtg-tgagccaccgttcccggctgcacgaagat----------------------
i macFas5.chr4             I 1538 I 27
e dasNov3.JH561790             19695 7082 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e saiBol1.JH378348            216751 187 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      152561 2017 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e calJac3.chr4             171389316 2277 - 171630274 I
e colAng1.NW_012115566v1     1860643 1626 -   3067355 I
e manLeu1.NW_012104165v1     1979764 2258 +   2316924 I
e chlSab2.chr17             28302275 367 -  71996105 I
e cerAty1.NW_012001495v1     1851279 2365 -   2157725 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I
e rheMac8.chr4              29342272 1668 + 172585720 I

a score=84241.000000
s hg38.chr6_GL000254v2_alt    152244 18 +   4827813 TTCTAATGGTTGTACCTG
s panTro5.chr6              29133382 18 + 175400573 TTCTAATGGTTGTACCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29367815 18 + 173848474 TTCTAATGGTTGTACCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5167939 18 +   6154872 TTCTAATGCTTATATCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74169072 18 + 122973662 TTCTAATGGCTGTAGCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29343940 18 + 172585720 ttctaatggttgtagctc
i rheMac8.chr4             I 1668 C 0
s macFas5.chr4              29004510 18 - 170955103 ttctaatggttgtagctc
i macFas5.chr4             I 27 C 0
s cerAty1.NW_012001495v1     1853644 18 -   2157725 ttctaatggttgtagctc
i cerAty1.NW_012001495v1   I 2365 C 0
s chlSab2.chr17             28302642 18 -  71996105 ttctaatggttgtagctc
i chlSab2.chr17            I 367 C 0
s colAng1.NW_012115566v1     1862269 18 -   3067355 ttctaatggttgtagctc
i colAng1.NW_012115566v1   I 1626 C 0
s calJac3.chr4             171391593 18 - 171630274 ttctaacagtggtagctc
i calJac3.chr4             I 2277 C 0
s saiBol1.JH378348            216938 18 -    375362 ttctaatggtgatagctc
i saiBol1.JH378348         I 187 C 0
e dasNov3.JH561790             19695 7082 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      152561 2017 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e manLeu1.NW_012104165v1     1979764 2258 +   2316924 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=82831.000000
s hg38.chr6_GL000254v2_alt    152262 30 +   4827813 TTGTATTTATGCTACATACTACAACA--------TATA
s panTro5.chr6              29133400 30 + 175400573 TTGTATTTATGCTACATACTACAACA--------TAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29367833 30 + 173848474 TTGTATTTATGCTACATACTACAACA--------TAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5167957 30 +   6154872 TTATATTTATGCTACATACTACAACA--------TATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74169090 21 + 122973662 TTATATTTATGCTATATACAA-----------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29343958 26 + 172585720 ttatatttaTACTATATACTACAATA------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29004528 26 - 170955103 ttatatttaTACTATATACTACAATA------------
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1853662 26 -   2157725 ttatatttaTACTATATACTACAATA------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28302660 30 -  71996105 ttatatttaTACTATATACTACAATATATA--------
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1862287 30 -   3067355 ttacatttaTACTATATACTACAATA----TATA----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171391611 24 - 171630274 ttatatttaTACTGTATACTATAT--------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            216956 24 -    375362 ttatatttaAACTGTATTATATAG--------------
i saiBol1.JH378348         C 0 C 0
s dasNov3.JH561790             26777 26 -    302817 TTCTGTCCACAGTATATACTATTATA------------
i dasNov3.JH561790         I 7082 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      152561 2017 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e manLeu1.NW_012104165v1     1979764 2258 +   2316924 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=3356.000000
s hg38.chr6_GL000254v2_alt    152292 2 +   4827813 TG
s panTro5.chr6              29133430 2 + 175400573 TG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29367863 2 + 173848474 TG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5167987 2 +   6154872 TG
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chr4             171391635 2 - 171630274 TA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            216980 2 -    375362 TA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      154578 2 -    285216 TG
i aotNan1.NW_018494050v1   I 2017 C 0
s dasNov3.JH561790             26803 2 -    302817 TA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e colAng1.NW_012115566v1     1862317 0 -   3067355 C
e manLeu1.NW_012104165v1     1979764 2258 +   2316924 I
e chlSab2.chr17             28302690 0 -  71996105 C
e cerAty1.NW_012001495v1     1853688 0 -   2157725 C
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I
e macFas5.chr4              29004554 0 - 170955103 C
e rheMac8.chr4              29343984 0 + 172585720 C
e nomLeu3.chr1a             74169111 0 + 122973662 C

a score=1153508.000000
s hg38.chr6_GL000254v2_alt    152294 154 +   4827813 TATACTATAATGTTTATAATGCCTGAACCCCACCCATAAAAATGAACATGCCATAACCTGGTCATTGTGAGAACCATAAGTGTAC-----------------CCAAA-TACATCGTAGTAGGTAGCAATGCCCTGGCTAAAGA---------CTACTGCGTGTTAGTACAGGTAAAGAATT
s panTro5.chr6              29133432 154 + 175400573 TATACTATAATGTTTATAATGCCTGAACCCCACCCATAAAAATGAACATGCCATAACCTGGTCATTGTGAGAACCATAAGTGTAC-----------------CCAAG-TACATCGTAGTAGGTAGCAATGCCCTGGCTAAAGA---------CTACTGCGTGTTAGTACAGATAAAGAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29367865 154 + 173848474 TATACTATAATGTTTATAATGCCTGAACCCCACCCATAAAAATGAACATGCCATAACCTGGTCATTGTGAGAACCATAAGTGTAC-----------------CCAAG-TACATCGTAGTAGGTAGCAATGCCCTGGCTAAAGA---------CTACTGCGTGTTAGTACAGATAAAGAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5167989 154 +   6154872 TATACTATAATGTTTGTAATGCCTGAACCCCACCCATAAAAATGAACATGCCATAACCTGGTCATTGTGAGAACCATAAGTGTAC-----------------CCAAA-TACATCGTAGTAGGTAGCAATGCCCTGGCAAAAGA---------CTACTGCTTGTTAGTACAGATAAAGAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74169111 163 + 122973662 TATACTATAATGTTTACAATGTCTGAACCCCACCCGTAAAAACGAAAGTGCCATAACCTGGTCATCGTGAGAACCATAAGTGTCC-----------------CCAAA-TATATAGTATTAGGTAGCAATGCCCTGGCTAAAGACTAGTGTATCTAGTGTATATTAGTACAGATAAAGAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29343984 154 + 172585720 TATACTATAATGTTTATAATGTCTGAACCCCTCCCATAAAAATGAAAGTGCCATACCCCAGTCATTGTGAGAACCGTAAATGTCC-----------------CCAAA-TATATACTAGTAGGTAGCAATGCCTTGGCTAAAGA---------CTACTGCATATTTGTACAGATAAAGAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29004554 154 - 170955103 TATACTATAATGTTTATAATGTCTGAACCCCTCCCATAAAAATGAAAGTGCCATACCCCAGTCATTGTGAGAACCGTAAATGTCC-----------------CCAAA-TATATACTAGTAGGTAGCAATGCCTTGGCTAAAGA---------CTACTGCATATTTGTACAGATAAAGAATT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1853688 154 -   2157725 TATACTATAATGTTTATAATGTCTGAACCCCTCCCATAAAAATGAAAGTGCCATACCCCAGTCATTGTGAGAACCGTAAATGTCC-----------------CCAAA-TATATACTAGTAGGTAGCAATGCCTTGGCTAAAGA---------CTACTGCATATTAGTACAGATAAAGAATT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28302690 150 -  71996105 ----CTATAATGTTTATAATGTCTGAACCCCTCCCATAAAAATGAAAGTGCTATACCCCAGTCATTGTGAGAACCGTAAATGTCC-----------------CCAAA-TATATACTAGTAGGTAGCAATGCCTTGGCTAAAGA---------CTACTGCATATTAGTACAGATAAAGAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1982022 154 +   2316924 TATACTATAATGTTTATAATGTCTGAACCCCTCCCATAAAAATGAAAGTGCCATACCCCAGTCATTGTGAGAACCGTAAATGTCC-----------------CCAAA-TATATACTAGTAGGTAGCAATGCCTTGGCTAAAGA---------CTACTGCATATTAGTACAGATAAAGAATT
i manLeu1.NW_012104165v1   I 2258 C 0
s colAng1.NW_012115566v1     1862317 150 -   3067355 ----CTATAATGTTTATAGTGTCTGAACCCCTCCCATAAAAATGAAAGTGCCATACCCCAGTCATTGTGAGAACCGTAAATGTCC-----------------CCAAA-TATATACTAGTAGGTAGCAATGCCTTGGCTAAAGA---------CTACTGCATATTAGTACAAATAAAGAATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171391637 155 - 171630274 TCTACTACAATGTTTATACTGTCTGAACCCCACCCATAATAATAAAAGTGCCATACACTGCTCATCGTGAGAACCATAAATTTCC-----------------CCAAATTAGATACCAGTAGGTAGCAATGCACTGGCTAAAGA---------CCACTGCATATTAGTACAGATAAAGAATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            216982 155 -    375362 TCTACTATAATGTTTATAATGTCTGAACCCCACCCATAATAATAAAAGTGCCATACACTGCTCATTGTGAGAACCATAAATGTCC-----------------ACAAATTAGATACCAGTAGGTAGCAATGCGCTGGCTAAAGA---------CTACTGCATATTAGTATAGATAAAGAATT
i saiBol1.JH378348         C 0 I 312
s aotNan1.NW_018494050v1      154580 155 -    285216 TATACTATACTGTTTATAATGTCTGAACCCCACCCATAATAATAAAAGTGCCATACACTGCTCATTGTGAGAACCATAAATGTCC-----------------CCAAATTAGATACCAGTAGGCAGCAATGCGCTGGCTAAAGG---------CTACTGCATATCAGTACGGATAAAGAATT
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             26805 170 -    302817 TATACAATAatgtttataatttctggattccaaacacaa-aattaaagtggcacaccccagtcattgtaataacca-aaatgccctcaaacataatacatttccaaa-tgcataatagaaggtcgcaatggcctggcttgtgac--------ccactgCGTATTAGCAAGGGTGAAGAATT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=303425.000000
s hg38.chr6_GL000254v2_alt    152448 45 +   4827813 AGCACAGATAAATTTT--ATTCAGTGCCCAAATAAAGTATTTTAAGG
s panTro5.chr6              29133586 45 + 175400573 AGCACAGATAAATTTT--ATTCAGTGCCCAAATAAAGTATTTTAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29368019 45 + 173848474 AGCACAGATAAATTTT--ATTCAGTGCCCAAATAAAGTATTTTAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5168143 45 +   6154872 AGCACAGATAAATTTT--ATTCAGTGCCCAAATAAGGTATTTTAAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74169274 47 + 122973662 AGCACAGATAAATTTTAAATTCACTGCCCAAATAAAGTATTTTAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29344138 45 + 172585720 AGCAGAGATACATTTT--ATTCAGTGCCCAAATAAAGTATTTTGGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29004708 45 - 170955103 AGCACAGATACATTTT--ATTCAGTGCCCAAATAAAGTATTTTGGGG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1853842 45 -   2157725 AGCACAGATACATTTT--ATTCAGTGCCCAAATAAAGTATTTTGGGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28302840 45 -  71996105 AGCACAGATACATTTT--ATTCAGTGCCCAAATAAAGTATTTTGGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1982176 45 +   2316924 AGCACAGATACATTTT--ATTCAGTGCCCAAATAAAGTATTTTGGGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1862467 45 -   3067355 AGCACAGATACATTTT--ATTCAGTGCCCAAATAAAGTATTTTAGGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171391792 44 - 171630274 AGCACAGA-AAATTTT--ATTCAGTGCCCAAATAAAGTCTTTTAAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            217449 45 -    375362 AGCACAGATAAATTTT--ATTCAGTGCCCAAATAAAGTCTTTTTAAG
i saiBol1.JH378348         I 312 I 1
s aotNan1.NW_018494050v1      154735 45 -    285216 AGCACAGATAAAGTTT--ATTCAGTGCCCAAATAAAGTCTCTTAAGG
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             26975 18 -    302817 -----------------------ATACC--Aggaaattgatgt----
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=598967.000000
s hg38.chr6_GL000254v2_alt    152493 117 +   4827813 CTCAAGTG---------------------------------------Gggccaggcacggtagctaacacctgtaatcccagcactttaggaggccgaggcgggtggatcacggggccaggagatcatgactatcctggctaacacggtgaaaccc
s panTro5.chr6              29133631 117 + 175400573 CTCAAGTG---------------------------------------Gggccaggcacggtggctaacacctgtaatcccagcactttaggaggccgaggtgggtggatcacgcggccaggagatcgtgactatcctggctaacacggtgaaaccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29368064 117 + 173848474 CTCAAGTG---------------------------------------Gggccaggcacggtggctaacacctgtaatcccagcgctttaggaggccgaggcgggtggatcacgcggccaggagatcgtgactatcctggctaacacggtgaaaccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5168188 117 +   6154872 CTCAAGTG---------------------------------------Gggccaggcacggtggctaacacctgtaatcccagcactttaggaggccgaggcgggtggatcacggggccaggagatcgtgactatcctggctaacacggtgcaaccc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74169321 117 + 122973662 CTCAAGTG---------------------------------------Gggccaggcacggtggctcacgcgtgtaatcccagcactttggggggccagggtgggtggatcacggggtcaggagatcgtgaccatcctggctaacacggtgaaaccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29344183 117 + 172585720 CTTAAGTT---------------------------------------Gggccaggcatggtggctcacgcctgtaatcccagcaccctgggaggccgaggtggatggatcacgaggtcaggagatcatgaccatcctggctaacacggtgaaaccc
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              29004753 117 - 170955103 CTCAAGTT---------------------------------------Gggccaggcatggtggctcacgcctgtaatcccagcaccctgggaggccgaggtggatggatcacgaggtcaggagatcatgaccatcctggctaacacggtgaaaccc
i macFas5.chr4             C 0 I 1
s cerAty1.NW_012001495v1     1853887 117 -   2157725 CTCAAGTT---------------------------------------Gggccaggcatggtggctcacgcctgtaatcccagcaccctgggaggccgaggtggatggatcacgaggtcaggagatcatgaccatcctggctaacacggtgaaaccc
i cerAty1.NW_012001495v1   C 0 I 1
s chlSab2.chr17             28302885 117 -  71996105 CTCAAGTT---------------------------------------Gggccaggcatagtggctcacgcctgtaatcccagcaccctgggaggccgaggtggatggatcaggaggtcaggagatcatgaccatcctggctaacacggtgaaaccc
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012104165v1     1982221 117 +   2316924 CTCAAGTT---------------------------------------Gggccaggcatggtggctcacgcctgtaatcccagcaccctgggaggccgaggtggatggatcacgaggtcaggagatcatgaccatcctggctaacacggtgaaaccc
i manLeu1.NW_012104165v1   C 0 I 1
s colAng1.NW_012115566v1     1862512 117 -   3067355 CTCAAGTT---------------------------------------Gggccaggcatggtggctcacgcctgtaatcccagcaccctgggaggccaaggcgggtggatcatgaggtcaggagatcatgaccatcctggctaacacagtgaaaccc
i colAng1.NW_012115566v1   C 0 I 631
s calJac3.chr4             171391836 156 - 171630274 CTCAAGTGTTTTACTCCATAGTTTCCTTTTAATTAAAAGCTGATTCCTggctgggcacggtggctcatgcctataatcccagcactttgggaggccgaggcgggtggatcatgaggtcaagagatcaagaccctcctggccaacatggtgaaaccc
i calJac3.chr4             C 0 C 0
s dasNov3.JH561790             26993  52 -    302817 -----------------------------------------------------ggctcagtggt---------taatgccagcttctcaca------------------tacaaggtcctgggctca-----atccc-------------------
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e saiBol1.JH378348            217494   1 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      154780   0 -    285216 C
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=719689.000000
s hg38.chr6_GL000254v2_alt    152610 164 +   4827813 catctctact-aaaaataa---aaaaattaactgggtgtagtggtgggcgcctgtagtcccagtcccagctgcttgggagactgaggcag------------------ggaggggaaggttgcaatgagctgaaatctcgccattgcactccag--cct--gggcaacag---cgagactccatctc-----aaa--aaa
s panTro5.chr6              29133748 164 + 175400573 catctctact-aaaaatac---aaaaattagctgggtgtagtggcgggcgcctgtagtcccagtcccagctgcttgggagactgaggcag------------------ggaggggaaggttgcaatgagctgaaatctcgccgttgcactccag--cct--gggcaacag---caagactccatctc-----aaa--aaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29368181 164 + 173848474 catctctact-aaaaatac---aaaaattagctgggtgtagtggcgggcgcctgtagtcccagtcccagctgcttgggagactgaggcag------------------ggaggggaaggttgcaatgagctgaaatctcgccgttgcactccag--cct--gggcaacag---caagactccatctc-----aaa--aaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5168305 164 +   6154872 catctctact-aaaaatac---aaaaattagctgggtgtagtggcgggcgcctgtagtcccagtcccagctgcttgggagactgaggcag------------------ggaggggaaggttgcaatgagctgaaatctcgccattgcactccag--cct--gggcaacag---cgagactccatctc-----aaa--aaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74169438 164 + 122973662 cgtctgtact-aaaaataa---aaaaattagcagggtgtagtggcgggcgcctgtagtcccagtcccagctactcgggagactgaggcag------------------ggaggggaaggttgcagtgagctgaaatctcgccattgcacgccag--cct--gggcaacag---cgagactctatctc-----aaa--aaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29344301 162 + 172585720 cgtctccact-aaaaatac---aaaaattagccaggcgtagtggcgggcgcctgt------agtcccagctacttgggagactgaggcag------------------ggagggggaggttgcagtgagctgagatgttgccattgcactccag--cct--gggcgacag-aatgagactccatctc-----aggaaaaa
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              29004871 159 - 170955103 cgtctccact-aaaaatac---aaaaattagccaggcgtagtggcgggcgcctgt------agtcccagctacttgggagactgaggcag------------------ggagggggaggttgcagtgagctgagatgttgccattgcactccag--cct--gggcgacag-aatgagactccatctc-----agg---aa
i macFas5.chr4             I 1 C 0
s cerAty1.NW_012001495v1     1854005 163 -   2157725 cgtctccact-aaaaatac---aaaaattagccaggcgtagtggcgggcgcctgt------agtcccagctacctgggagactgaggcag------------------ggagggggaggttgcagtgagctgagatcttgccattgcactccag--cctgcgggcg-cag-aatgagactccatctc-----aggaaaaa
i cerAty1.NW_012001495v1   I 1 C 0
s chlSab2.chr17             28303003 166 -  71996105 cgtctccactaaaaaatac---aaaaattagccaggcgtagtggcgggcgcctgt------agtcccagctacttgggagactgaggcag------------------ggagggggaggttgcagtgagctgagatcttgccattgcactccag--cct--gggtgacag-aatgagactccatctcaggggagg--aaa
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012104165v1     1982339 160 +   2316924 cgtctccact-aaaaatac---aaaaattagccaggcgtagtggcgggtgcctgt------agtcccagctacttgggagactgaggcag------------------ggagggggaggttgcagtgagctgagatcttgccattgcactccag--cct--gggcgacag-aatgagactccatctc-----ggg--aaa
i manLeu1.NW_012104165v1   I 1 C 0
s colAng1.NW_012115566v1     1863260 160 -   3067355 cgtctctact-aaaaatac---aaaaattagccaggcatagtggcgggcgcctgt------agtcccagctacttgggagactgaggcaa------------------ggatggggaggttgcagtgagctgagatcttgccattgcactccag--cct--gggcgacag-aataagactccatctc-----agg--gga
i colAng1.NW_012115566v1   I 631 C 0
s calJac3.chr4             171391992 182 - 171630274 cgtctctact-aaaaatacaaaaaaaattagctgggcgtggtggcgcatgcctgt------aatcccagctactcaggaggctgaggcaggagaattgcctgaacccaggaggcggaggttgcagtgagccgagatcgtgccattgcactccag--tct--gggtaacaacagcgaaactccatctc-----aaa--aaa
i calJac3.chr4             C 0 T 341
s dasNov3.JH561790             27045  50 -    302817 ------------------------------------------------------------tggtccta-ttacct------------cat------------------agaaaaaaa-------------------------aTTACAACACAGTCCCT--GAATAAA--------------------------------
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e saiBol1.JH378348            217494   1 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      154780   0 -    285216 C
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=31742.000000
s hg38.chr6_GL000254v2_alt    152774 11 +   4827813 a-------aaaaaaaaaa
s panTro5.chr6              29133912 11 + 175400573 a-------aaaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29368345  6 + 173848474 a-------aaaaa-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5168469 11 +   6154872 a-------aaaaaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74169602 11 + 122973662 a-------aaaaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29344463 11 + 172585720 a-------aaaaaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29005030 11 - 170955103 a-------aaaaaaaaaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1854168 18 -   2157725 aaaaaaacaaaaaaaaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28303169 11 -  71996105 a-------aaaaaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1982499 11 +   2316924 a-------aaaaaaaaaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1863420 11 -   3067355 a-------aaaaaaaaaa
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH561790             27095 11 -    302817 -------CGAAGTATTTA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e saiBol1.JH378348            217494  1 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      154780  0 -    285216 C
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e calJac3.chr4             171392174 341 - 171630274 T
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=-2860.000000
s hg38.chr6_GL000254v2_alt    152785 4 +   4827813 -aaaa
s panTro5.chr6              29133923 4 + 175400573 -aaaa
i panTro5.chr6             C 0 I 21
s gorGor5.CYUI01015250v1     5168480 4 +   6154872 -aaaa
i gorGor5.CYUI01015250v1   C 0 I 7
s nomLeu3.chr1a             74169613 3 + 122973662 -aGC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29344474 3 + 172585720 -aGG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29005041 3 - 170955103 -aGG-
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1854186 3 -   2157725 -aGG-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28303180 3 -  71996105 -aaa-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1982510 3 +   2316924 -aGG-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1863431 3 -   3067355 -aGG-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171391833 3 - 171630274 -AGG-
i calJac3.chr4             T 341 C 0
s dasNov3.JH561790             27106 4 -    302817 AAGG-
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e saiBol1.JH378348            217494 1 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      154780 0 -    285216 C
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I
e panPan2.chr6              29368351 0 + 173848474 C

a score=252802.000000
s hg38.chr6_GL000254v2_alt    152789 34 +   4827813 CTCAAGTGTTGTACTCCATAGTTTCCCTTTAATG
s panTro5.chr6              29133948 34 + 175400573 CTCAAGTGTTGTACTCCATAGTTTCACTTTAATG
i panTro5.chr6             I 21 C 0
s panPan2.chr6              29368351 34 + 173848474 CTCAAGTGTTGTACTCCATAGTTTCACTTTAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5168491 34 +   6154872 CTCAAGTGTTGTACTCCATAGTTTCCCTTTAATG
i gorGor5.CYUI01015250v1   I 7 C 0
s nomLeu3.chr1a             74169616 34 + 122973662 CTCAAGTGTTGTACTCCATAGTTTCCCTTTAATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29344477 34 + 172585720 CTCAAGTGTTTTACTCCACAGTTTTCCTTTAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29005044 34 - 170955103 CTCAAGCGTTTTACTCCACAGTTTTCCTTTAATG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1854189 32 -   2157725 CTC-AGCG-TTTACTCCACAGTTTTCCTTTAATG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28303183 34 -  71996105 CTCAAGCGTTTTACTCCATAGTTTTCCTTTAATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1982513 34 +   2316924 CTCAAGCGTTTTACTCCACAGTTTTCCTTTAATG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1863434 34 -   3067355 CTCAAGTGTTTTACTCCACAGTTTTCCTTTAATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171391836 34 - 171630274 CTCAAGTGTTTTACTCCATAGTTTCCTTTTAATT
i calJac3.chr4             C 0 I 304
s saiBol1.JH378348            217495 34 -    375362 CTCAAGTGTTTTACTCCATAGTTTCCTTTTAATT
i saiBol1.JH378348         I 1 C 0
s aotNan1.NW_018494050v1      154780 34 -    285216 CTCAAGTGTTTTACTCCACAGTTTCCGTTTAATT
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             27110 34 -    302817 CTCAAGTAAATTGCGTCATACTTTCCTTTTAATT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=211280.000000
s hg38.chr6_GL000254v2_alt    152823 27 +   4827813 AAAAGCTGATTGCTTTTTTGAAGAGAA
s panTro5.chr6              29133982 27 + 175400573 AAAAGCTGATTGCTTTTTTGAAGAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29368385 27 + 173848474 AAAAGCTGATTGCTTTTTTGAAGAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5168525 27 +   6154872 AAAAGCTGATTGCTTTTTTGAAGAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74169650 27 + 122973662 AAAAGCTGATTCCTTTTTTGAAAAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29344511 27 + 172585720 AAAAGCTGATTCCTTTTTTGAAGAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29005078 27 - 170955103 AAAAGCTGATTCCTTTTTTTAAGAGAA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1854221 27 -   2157725 AAAAGCTGATTCCTTTTTTGAAGAGAA
i cerAty1.NW_012001495v1   C 0 I 107
s chlSab2.chr17             28303217 27 -  71996105 AAAAGCTGATTCCTTTTTTGAAGAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1982547 27 +   2316924 AAAAGCTGATTCCTTTTTTGAAGAGAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1863468 27 -   3067355 AAAAGCGGATTCCTTTTTTGAAGAGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171392174 27 - 171630274 aaaaGCTGATTCCTTTTGTGAAGACAA
i calJac3.chr4             I 304 C 0
s saiBol1.JH378348            217529 27 -    375362 AAAAGCTGATTCCTTTTGTGAAGACAG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      154814 27 -    285216 AAAAGCTGATTCCTTTTGTGAAGACAG
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             27144 25 -    302817 AAAAGCTGATTCC--TTgggaagcgga
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=12690.000000
s hg38.chr6_GL000254v2_alt    152850 3 +   4827813 CTT
s panTro5.chr6              29134009 3 + 175400573 CTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29368412 3 + 173848474 CTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5168552 3 +   6154872 CTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74169677 3 + 122973662 CTT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1     1863495 3 -   3067355 CTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171392201 3 - 171630274 CTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            217556 3 -    375362 CTT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      154841 3 -    285216 CTT
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             27169 3 -    302817 ctt
i dasNov3.JH561790         C 0 I 468
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e manLeu1.NW_012104165v1     1982574 0 +   2316924 C
e chlSab2.chr17             28303244 0 -  71996105 C
e cerAty1.NW_012001495v1     1854248 107 -   2157725 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I
e macFas5.chr4              29005105 0 - 170955103 C
e rheMac8.chr4              29344538 0 + 172585720 C

a score=203601.000000
s hg38.chr6_GL000254v2_alt    152853 33 +   4827813 CGTATTTTTTATCTCAGAGTTTCCTTTTAA---AAG
s panTro5.chr6              29134012 33 + 175400573 CGTATTTTTTATCTCAGAGTTTCCTTTTAA---AAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29368415 33 + 173848474 CGTATTTTTTATGTCAGAGTTTCCTTTTAA---AAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5168555 33 +   6154872 CGTATTTTTTGTCTCAGAGTTTCCTTTTAA---AAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74169680 36 + 122973662 CATCTTTTTTATCTCAGAGTTTCCTTTTAAAAGAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29344538 33 + 172585720 CGTATTTTTTATCTCAGAGTTTCCTTTTAA---AAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29005105 33 - 170955103 CGTATTTTTTATCTCAGAGTTTCCTTTTAA---AAG
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28303244 33 -  71996105 CATATGTTTTATCTCAGAGTTTCCTTTTAA---AAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1982574 33 +   2316924 CATATTTTTTATCTCAGAGTTTCCTTTTAA---AAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1863498 33 -   3067355 CATATTTTTTATCTCAGAGTTTCCTTTTAA---AAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171392204 33 - 171630274 TATATTTTATATCTGAGAGTTTCCTTTTAA---AAG
i calJac3.chr4             C 0 T 353
s saiBol1.JH378348            217559 33 -    375362 CATATTTTATAACTCAGAGTTTTCTTTTAA---AAG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      154844 33 -    285216 CATATTTTATATCTCAGAGTTCCCTTTTAA---AAG
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             27172 468 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e cerAty1.NW_012001495v1     1854248 107 -   2157725 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=10152.000000
s hg38.chr6_GL000254v2_alt    152886 3 +   4827813 AAG
s panTro5.chr6              29134045 3 + 175400573 AAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29368448 3 + 173848474 AAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5168588 3 +   6154872 AAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74169716 3 + 122973662 AAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29344571 3 + 172585720 AAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29005138 3 - 170955103 AAG
i macFas5.chr4             C 0 C 0
s manLeu1.NW_012104165v1     1982607 3 +   2316924 AAG
i manLeu1.NW_012104165v1   C 0 C 0
s aotNan1.NW_018494050v1      154877 3 -    285216 AAG
i aotNan1.NW_018494050v1   C 0 I 12
e dasNov3.JH561790             27172 468 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e saiBol1.JH378348            217592 0 -    375362 C
e otoGar3.GL873742           1527577 3716 -   2232465 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e calJac3.chr4             171392237 353 - 171630274 T
e colAng1.NW_012115566v1     1863531 0 -   3067355 C
e chlSab2.chr17             28303277 0 -  71996105 C
e cerAty1.NW_012001495v1     1854248 107 -   2157725 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=2800.000000
s hg38.chr6_GL000254v2_alt    152889 1 +   4827813 C
s panTro5.chr6              29134048 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29368451 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5168591 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74169719 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29344574 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29005141 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s manLeu1.NW_012104165v1     1982610 1 +   2316924 C
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH561790             27172 468 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e saiBol1.JH378348            217592 0 -    375362 C
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      154880 12 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e calJac3.chr4             171392237 353 - 171630274 T
e colAng1.NW_012115566v1     1863531 0 -   3067355 C
e chlSab2.chr17             28303277 0 -  71996105 C
e cerAty1.NW_012001495v1     1854248 107 -   2157725 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=910.000000
s hg38.chr6_GL000254v2_alt    152890 1 +   4827813 A
s panTro5.chr6              29134049 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29368452 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5168592 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74169720 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
e dasNov3.JH561790             27172 468 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e saiBol1.JH378348            217592 0 -    375362 C
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      154880 12 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e calJac3.chr4             171392237 353 - 171630274 T
e colAng1.NW_012115566v1     1863531 0 -   3067355 C
e manLeu1.NW_012104165v1     1982611 0 +   2316924 C
e chlSab2.chr17             28303277 0 -  71996105 C
e cerAty1.NW_012001495v1     1854248 107 -   2157725 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I
e macFas5.chr4              29005142 0 - 170955103 C
e rheMac8.chr4              29344575 0 + 172585720 C

a score=350961.000000
s hg38.chr6_GL000254v2_alt    152891 290 +   4827813 ggccaggcgcggtggctcacgcctgtaatcccagcactt--agaggctgaggcaggtggatcacgaggtcaggagttcaagaccagcctggccaagatggtgaaa-ccccgtctctactaaaaatac--aaaaaattagcctggcatggtggcacgcgcctgtaatcccagctactc------cggaggc-------ggagaattgcttaaacctggaggggcggagcttgcagtgagccgagatcgcaccactgcactccagcctgggtgacag-agcgaaactccgtcgcaaaataaataaataaat
s panTro5.chr6              29134050 290 + 175400573 ggccaggcgcggtggttcacgcctgtaatcccagcactt--agaggctgaggcaggtggatcacgaggtcaggagttcaagaccagcctggccaagatggtgaaa-ccccgtctctactaaaaatac--aaaaaattagcctggcatggtggtacgcgcctgtaatcccagctactc------cggaggc-------ggagaattgcttaaacctggaggggcggagcttgcagtgagccgagatcgcaccactgcactccagcctgggtgacag-agcgaaactccgtcgcaaaataaataaataaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29368453 290 + 173848474 ggccaggcgcggtggttcacgcctgtaatcccagcactt--agaggctgaggcaggtggatcacgaggtcaggagttcaagaccagcctggccaagatggtgaaa-ccccgtctctactaaaaatac--aaaaaattagcctggcatggtggcacgagcctgtaatcccagctactc------cggaggc-------ggagaattgcttaaacctggaggggcggagcttgcagtgagccgagatcgcaccactgcactccagcctgggtgacag-agcgaaactccgtcgcaaaataaataaataaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5168593 290 +   6154872 ggtcaggcgcggtggctgacgcctgtaatcccagcactt--agaggctgaggcaggtggatcacgaggtcaggagttcaagaccagcctggccaagatggtgaaa-ccccgtctctactaaaaatac--aaaaaattagcttggcatggtggcacgctcctgtaatcccagctactc------cggaggt-------ggagaattgcttaaacctggaggggcggagcttgcagtgagccgagatcgcaccactgcactccagcctgggtgacag-agcgaaactccgccgcaaaataaataaataaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74169721 298 + 122973662 ggccaggcgcggtgggtcacgcctgtaatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagttcaagactagcctggcgaagatggtgaaacccccgtctctactaaaaatac--aaaaaattagcctggcatggtggcacgcgcctgtaatcccagctactctggaggcggaggc-------agagaattgcttaaacctggaggggcggagtttgcagtgagccgagatcacgccactgcactccagcctgggcgacag-agcgaaactccgtcacaaaataaataaataaa-
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171391884 301 - 171630274 ggctgggcacggtggctcatgcctataatcccagcactttgggaggccgaggcgggtggatcatgaggtcaagagatcaagaccctcctggccaacatggtgaaa-ccccgtctctactaaaaatacaaaaaaaattagctgggcgtggtggcgcatgcctgtaatcccagctactc------aggaggctgaggcaggagaattgcctgaacccag-gaggcggaggttgcagtgagccgagatcgtgccattgcactccagtctgggtaacaacagcgaaactccatctcaaaaaaaaaaGCTGATT
i calJac3.chr4             T 353 I 52
e dasNov3.JH561790             27172 468 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25879758 7018 +  26524999 I
e saiBol1.JH378348            217592   0 -    375362 C
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      154880  12 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e colAng1.NW_012115566v1     1863531   0 -   3067355 C
e manLeu1.NW_012104165v1     1982611   0 +   2316924 C
e chlSab2.chr17             28303277   0 -  71996105 C
e cerAty1.NW_012001495v1     1854248 107 -   2157725 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I
e macFas5.chr4              29005142   0 - 170955103 C
e rheMac8.chr4              29344575   0 + 172585720 C

a score=3685.000000
s hg38.chr6_GL000254v2_alt    153181 4 +   4827813 aaaa
s panTro5.chr6              29134340 4 + 175400573 aaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29368743 4 + 173848474 aaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5168883 4 +   6154872 aaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74170019 4 + 122973662 aaag
i nomLeu3.chr1a            C 0 C 0
s canFam3.chr35             25886776 4 +  26524999 AAAG
i canFam3.chr35            I 7018 C 0
e dasNov3.JH561790             27172 468 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e saiBol1.JH378348            217592 0 -    375362 C
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      154880 12 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e calJac3.chr4             171392185 52 - 171630274 I
e colAng1.NW_012115566v1     1863531 0 -   3067355 C
e manLeu1.NW_012104165v1     1982611 0 +   2316924 C
e chlSab2.chr17             28303277 0 -  71996105 C
e cerAty1.NW_012001495v1     1854248 107 -   2157725 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I
e macFas5.chr4              29005142 0 - 170955103 C
e rheMac8.chr4              29344575 0 + 172585720 C

a score=15606.000000
s hg38.chr6_GL000254v2_alt    153185 4 +   4827813 aaga
s panTro5.chr6              29134344 4 + 175400573 aaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29368747 4 + 173848474 aaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5168887 4 +   6154872 aaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74170023 4 + 122973662 aaga
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28303277 4 -  71996105 AAGA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1863531 4 -   3067355 AAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171392237 4 - 171630274 AAGA
i calJac3.chr4             I 52 C 0
s saiBol1.JH378348            217592 4 -    375362 AAGA
i saiBol1.JH378348         C 0 C 0
s canFam3.chr35             25886780 4 +  26524999 AAAA
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             27172 468 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      154880 12 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e manLeu1.NW_012104165v1     1982611 0 +   2316924 C
e cerAty1.NW_012001495v1     1854248 107 -   2157725 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I
e macFas5.chr4              29005142 0 - 170955103 C
e rheMac8.chr4              29344575 0 + 172585720 C

a score=75658.000000
s hg38.chr6_GL000254v2_alt    153189 15 +   4827813 aGCATATGTTAGTTT
s panTro5.chr6              29134348 15 + 175400573 aGCATATGTTAGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29368751 15 + 173848474 aGCATATGTTAGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5168891 15 +   6154872 aGCATATGTTAGTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74170027 11 + 122973662 aGCATGTGTTA----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29344575 15 + 172585720 AGCATATGTTAGTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29005142 15 - 170955103 AGCATATGTTAGTTT
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28303281 15 -  71996105 AGCATATGTTAGTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1982611 15 +   2316924 AGCATATGTTAGTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1863535 15 -   3067355 AGCATATGTTAGTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171392241 11 - 171630274 AGCATGTGTTA----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            217596 11 -    375362 AGCACATGTTA----
i saiBol1.JH378348         C 0 C 0
s canFam3.chr35             25886784 15 +  26524999 AGCATATATTAGTTT
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             27172 468 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      154880 12 -    285216 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e cerAty1.NW_012001495v1     1854248 107 -   2157725 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=341475.000000
s hg38.chr6_GL000254v2_alt    153204 49 +   4827813 GTTTCCACAG-TA---AGTGAAGACAGGCCATGTCACAAAAAGACGGGGAACA-
s panTro5.chr6              29134363 49 + 175400573 GTTTCCACAG-TA---AGTGAAGACAGGCCATGTCACAAAAAGACGGGGAACA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29368766 49 + 173848474 GTTTCCACAG-TA---AGTGAAGACAGGCCATGTCACAAAAAGACGGGGAACA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5168906 49 +   6154872 GTTTCCACAG-TA---AGTGAAGACAGGCCATGTCACAAAAAGACGGGGAACA-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74170038 49 + 122973662 GTTTCCACAG-TA---AGTGAAGATAGGCCATGTCACAAATAAACAGGGAACA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29344590 49 + 172585720 GTTTTCACAG-TA---AGTGAAGATAGGCCATGTCACAAATAAACAGGGAACA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29005157 49 - 170955103 GTTTTCACAG-TA---AGTGAAGATAGGCCATGTCACAAATAAACAGGGAACA-
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28303296 49 -  71996105 GTTTTCACAG-TA---AGTGAAGATAGGCCATGTCACAAATAAACAGGGAACA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1982626 49 +   2316924 GTTTTCACAG-TA---AGTGAAGATAGGCCATGTCACAAATAAACAGGGAACA-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1863550 49 -   3067355 GTTTTCACAG-TA---AGTGAAGATAGGCCATGTCACAAATAAACAGGGAACA-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171392252 49 - 171630274 GTTTCCACAG-TA---AGTGAAGATAGGCCACGTCACAAATAAACTGGGAACA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            217607 50 -    375362 GTTTCCAAAGTTA---AGTGAAGATAGGCCACATCACAAATAAACTGGGAACA-
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      154892 49 -    285216 GTTTCCACAG-TA---AGTGAAGCTAGGCCACGTCACAAATAAACTGGGAACA-
i aotNan1.NW_018494050v1   I 12 C 0
s canFam3.chr35             25886799 53 +  26524999 GTTTCCACAG-TAGTGAGTGAAGAAAAGCCATTTCACAAGTAAGTTGAGAGTAC
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             27172 468 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e cerAty1.NW_012001495v1     1854248 107 -   2157725 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=42629.000000
s hg38.chr6_GL000254v2_alt    153253 7 +   4827813 ACACTGG
s panTro5.chr6              29134412 7 + 175400573 ACACTCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29368815 7 + 173848474 ACACTCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5168955 7 +   6154872 ACACTCG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74170087 7 + 122973662 ACACTCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29344639 7 + 172585720 ACACTCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29005206 7 - 170955103 ACACTCG
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28303345 7 -  71996105 ACACTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1982675 7 +   2316924 ACACTCG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1863599 7 -   3067355 ACACTCG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171392301 7 - 171630274 ACACTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            217657 7 -    375362 ATACTTG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      154941 7 -    285216 ATACTTG
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25886852 4 +  26524999 ATAA---
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             27640 7 -    302817 ACATTCG
i dasNov3.JH561790         I 468 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e cerAty1.NW_012001495v1     1854248 107 -   2157725 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=849502.000000
s hg38.chr6_GL000254v2_alt    153260 114 +   4827813 ACTGTAGCTCGTAGACAAAGGAAACCTTGAGAAGTTTAA-CACTGTATCATAGTTTTAGACAGAACACAA----TAATTACATT-GTTAGAACAAAGTACTTAAAGAACTGATGTTAC--TT
s panTro5.chr6              29134419 114 + 175400573 ACTGTAGCTCGTAGACAAAGGAAACCTTGAGAAGTTTAA-CACTGTATCATAGTTTTAGACAGAACACAA----TAATTACATT-GTTAGAACAAAGTACTTAAAGAACTGATGTTAC--TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29368822 113 + 173848474 ACTGTAGCTCGTAGACAAAGGAAACCTTGAGAAGTTTAA-CACTGTATCATAGTTTTAGACAGAACACAA----TAATTACATT-GTTAGAACAAAGTACTTAAAGAACTGATGTTAC---T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5168962 114 +   6154872 ACTGTAGCTCGTAGACAAAGGAAACCTTGAGAAGTTTAA-CACTGTATCATAGTTTTAGACAGAACACAA----TAATTACATT-GTTAGAACAAAGTACTTAAAGAACTGATGTTAC--TT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74170094 111 + 122973662 ACTGTATCTCATAGACAAAGGAAACCTTGAGAAGTTTAA-CACTGTATC--AGTTTTAGATAGAACACAA----TAGTTACATT-GTTAGAACAAAGTACTTAAAGAACTGGTGTTAC---T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29344646 113 + 172585720 ACTGTATCTCGTAGACAAAGGAAACCTTGAGAAGTTTAA-CACTGTATCATAGTTTTAGACAGAACACAA----TAATTACATT-GTTAGAACAAAGTACTAAAAGAACTGATGTTAC---T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29005213 113 - 170955103 ACTGTATCTCGTAGACAAAGGAAACCTTGAGAAGTTTAA-CACTGTATCATAGTTTTAGACAGAACACAA----TAATTACATT-GTTAGAACAAAGTACTAAAAGAACTGATGTTAC---T
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1854355 114 -   2157725 ACTGTATCTCATAGACAAAGGAAACCTTGAGAAGTTTAAGCACTGCATCATGAGTTTAGACAGAACACAA----TATTAACATTGGTTAGAACAAAGTACT-AAAGAACTGATGTTAC---T
i cerAty1.NW_012001495v1   I 107 C 0
s chlSab2.chr17             28303352 113 -  71996105 ACTGTATCTCATAGACAAAGGAAACCTTGAGAAGTTTAA-CACTGTATCACAGTTTTAGACAGAACACAA----TAATTACATT-GTTAGAACAAAGTACTAAAAGAACTGATGTTAC---T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1982682 113 +   2316924 ACTGTATCTCATAGACAAAGGAAACCTTGAGAAGTTTAA-CACTGTATCATAGTTTTAGACAGAACACAA----TAATTACATT-GTTAGAACAAAGTACTAAAAGAACTGATGTTAC---T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1863606 113 -   3067355 ACTGTATCTCATAGACAAAGGAAACCTTGAGAAGTTTAA-CACTGTATCATAGTTTTAGACAGAACACAA----TAATTACATT-GTTAGAACAAAGTACTAAAAAAACTGATGTTAC---T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171392308 112 - 171630274 ACTGTACCTCGTAGACAAAGGAAACCTTGAGAAGTTTCA-CACTGCATCATAGTTTTCGACAGAACACGA----TAATTACACT-GTCAGTACACTGTACTTAAATAACTGATGGTAC----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            217664 112 -    375362 ACTGTATCTCATAGAAAAAGGAAACCTTGACAAGTTTCA-CACTGCGTCACAGTTTTAGACAGAACACAA----TAATTACATT-GTTAGTACACCGTACTTAAATAATTGGTGTTAT----
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      154948 114 -    285216 ACTGTATCTCACAGGCAAAGGAAACCTTGAGAAGTTTCA-CAATGCATCATAGTTTTAGACAGAACACAA----TAATTACATT-GTTAGTACACTGTACTTAAATAATTGACGTTACTT--
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25886856 112 +  26524999 ACTATATCTCCTGGAGAGATATAG--TTGAAAAATGTAA-CAC--CATCATCGTTTTAGATAGAAGGGAATAACTAATTATATTAACAAGTATATGGTACTTAATAAATC--TATTAC---C
i canFam3.chr35            C 0 I 2
s dasNov3.JH561790             27647 103 -    302817 ACTATATCACAAACACAAAAAAACCCTGGAGAAGATTAA-CATGG--TTATGGTTTTATATAGAATAGAA----TAACTACATTAGCAAGTTCATTGTATGTAAGGAAAT------------
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e cebCap1.NW_016108108v1      213799 3165 -    373274 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=93806.000000
s hg38.chr6_GL000254v2_alt    153374 11 +   4827813 TTTTTTTCTTT--
s panTro5.chr6              29134533 11 + 175400573 TTTTTTTCTTT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29368935 11 + 173848474 TTTTTTTCTTT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5169076 11 +   6154872 TTTTTTTCTTT--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74170205 11 + 122973662 TTTTATTCTTT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29344759 11 + 172585720 TTTTTTTCTTT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29005326 11 - 170955103 TTTTTTTCTTT--
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1854469  8 -   2157725 TTTTTCTC-----
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28303465 11 -  71996105 TTTTTTTCTTT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1982795 11 +   2316924 TTTTTTTCTTT--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1863719 11 -   3067355 TTTTTTTCTTT--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171392420 11 - 171630274 TTTTCTTCTTC--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            217776 11 -    375362 TTTTCTTCTTC--
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      216964 11 -    373274 TTTTCTTCTTC--
i cebCap1.NW_016108108v1   I 3165 C 0
s aotNan1.NW_018494050v1      155062  9 -    285216 --TTCTTCTTC--
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25886970 11 +  26524999 TTTTTTTCTTT--
i canFam3.chr35            I 2 I 184
s dasNov3.JH561790             27750 11 -    302817 --TTTTTCTTTTC
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=1209985.000000
s hg38.chr6_GL000254v2_alt    153385 132 +   4827813 ATTT----------------AAGAGCATAACTTAAC---------------------AA--TAGTCCCACTTGGTCAGGCCTATGAT---------CCCCCCAGTCTATTACTGTAT-GATTCTGAAGCTGTGGGAGGAAGCAATGCCCTCCTACATATCA---ACTCATGAATTACATATACA
s panTro5.chr6              29134544 132 + 175400573 ATTT----------------AAGAGCATAACTTAAC---------------------AA--TAGTCCCACTTGGTCAGGCCTATGAT---------CCCCCCAGTCTATTACTGTAT-GATTCTGAAGCTGTGGGAGGAAGCAATGCCCTCCTACATATCA---ACTCATGAATTACATATACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29368946 132 + 173848474 ATTT----------------AAGAGCATAACTTAAC---------------------AA--TAGTCCCACTTGGTCAGGCCTATGAT---------CCCCCCAGTCTATTACTGTAT-GATTCTGAAGCTGTGGGAGGAAGCAATGCCCTCCTACATATCA---ACTCATGAATTACATATACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5169087 132 +   6154872 ATTT----------------AAGAGCATAACTTAAC---------------------AA--TAGTCCCACTTGGTCAGGCCTATGAT---------CCCCCCAGTCTATTACTGTAT-GATTCTGAAGCTGTGGGAGGAAGCAATGCCCTCCTACATATCA---ACTCATGAATTACATATACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74170216 132 + 122973662 ATTT----------------AAGAGCATAACTTAAC---------------------AA--TAGTCCCACTTGGTCAGGCCTATGAT---------CCCCCCAGTCTATTACTGTAT-GATTCTAAAGCTGTGGGAGGAAGCAATGCCCTCCTACATATCA---ACTCATGAATTACATATACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29344770 141 + 172585720 ATTT----------------AAGAGCATAACTTAAC---------------------AA--TAGTCCCACTTGGTCAGGCCTATGTTCCCCGCCCCCCCCCCAGTCGATTACTGTCT-GATTCTAAAGCAGTGGGAAGAAGCAATGCCCTCCTACATATCA---ACTCACGAATTACACATACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29005337 135 - 170955103 ATTT----------------AAGAGCATAACTTAAC---------------------AA--TAGTCCCACTTGGTCAGGCCTATGTT------CCCCCCCCCAGTCGATTACTGTAT-GATTCTAAAGCAGTGGGAAGAAGCAATGCCCTCCTACATATCA---ACTCACGAATTACACATACA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1854477 131 -   2157725 --TT----------------AAGAGCATAACATAAC---------------------AA--TAGTCCCACTTGGTCAGG-CTATGTT----------CCCCCAGTCTATTACTGTAT-GATTCTAAAGCAGTGGGAGGAAGCAATGCCCTCCTACATATCACACCTCCACGAATTACACATACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28303476 132 -  71996105 ATTT----------------AAGAGCATAACTTAAC---------------------AA--TAGTCCCACTTGGTCAGGCCTATATT---------CCCCCCAGTCTATTACTGTAT-GATTCTAAAGCAGTGGGAGGAAGCAATGCCCTCCTACATATCA---ACTCAGGAATTACACATACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1982806 133 +   2316924 ATTT----------------AAGAGCATAACTTAAC---------------------AA--TAGTCCCACTTGGTCAGGCCTATGTT--------CCCCCCCAGTCTATTACTGTAT-GATTCTAAAGCAGTGGGAGGAAGCAATGCCCTCCTACATATCA---ACTCATGAATTACACATACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1863730 136 -   3067355 ATTT----------------AAGAGCATAACTTAAC---------------------AA--TAGTCCCACTTGGTCAGGCCTATGTC-----CCCCACCCCCCGTCTATTACTGTAT-GATTCTAAAGCAGTGGGAGGAAGCAATGCCCTCCTACATATCA---GCTCACAAATTACACATACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171392431 154 - 171630274 ATTT----------------AAGAGCATAACTTAGCTCCCTTGGTCCCCCTTAACATAACTTAGTCCCCCTTGGTCAGGCCTATGTT---------CCCCGCAGTCTATTACTGTAT-GACTCTAAAACTGTCGGGGGAAGCGATGCC-TCCTACATATCA---ACTCATGAACTACATATACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            217787 132 -    375362 ATTT----------------AAGAGCATAACTTAGC---------------------AA--TAGTCCCACTTGGTCAGGTCTATGTT---------CCCCCCAGTCTATTACTGTAT-GATTCTAAAACTGTCGGAGGAAGCGATGCCTTCCTCCATATCA---ACTCATGAATTACATATGCA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      216975  98 -    373274 ATTT----------------AAGAGCATAACTTAGC---------------------AA--TAGTCCCACTTGGTCAGGTCTATGTT---------CCCCCCAGTCTATTACTGTAC-GATTCTAA----------------------------------A---ACTCATGAATTACATATACA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      155071 132 -    285216 ATTT----------------AAGAGCCTAACTTAGC---------------------AA--TAGTCCCACTTGGTCAGGCCTGTGTT---------CCCCCCAGTCTATTACTGTAT-GATTCTAAAACTGTCGGAGGAAGCGATGCCTTCCTACATATCA---ACTCATGAATTACATATACA
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25887165 146 +  26524999 atctttaaaaaaaaAAAAAAAAGAGCATAACTTAAA---------------------TA--TAGTCCCACTTGGTCAAGGTGATGGT---------CCTCCCAGCCCA-TACTGCAT-GATCCTGAAATTGTGGAACACAATGATGCTCTTCTAGAC-TCA---ACTCATGAGTTACATATATA
i canFam3.chr35            I 184 I 329
s dasNov3.JH561790             27761 132 -    302817 CTTT----------------ACGAGCATAACCTAAA---------------------AA--CAGTCACATTTGTTCAAGTCCACGTT---------CCTTCCAGCCTAGTTCTATATAAATCCTAAAACTGTGGGAAGAAAGACTGCCCTCCCAGCCATCA----CTCATGAGTTACACACATA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=631299.000000
s hg38.chr6_GL000254v2_alt    153517 70 +   4827813 TCTTCAAAAGATCAGAGATTTCC-ATTTTAGCCATCTCGT-CAATATTTCTACATAAGTTTAAAATACTTTT
s panTro5.chr6              29134676 70 + 175400573 TCTTCAAAAGATCAGAGATTTCC-ATTTTAACCATCTCGT-CAATATTTCTACATAAGTTTAAAATACTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29369078 70 + 173848474 TCTTCAAAAGATCAGAGATTTCC-ATTTTAACCATCTCGT-CAATATTTCTACATAAGTTTAAAATACTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5169219 70 +   6154872 TCTTCAAAAGATCAGAGATTTCC-GTTTTAACCATCTCGT-CAATATTTCTACATAAGTTTAAAATACTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74170348 70 + 122973662 TCTTCAAAAGATCAGAGATTTCC-ATTTTAACCATCTCGT-CAATATTTCTACATAACTTTAAAATATTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29344911 70 + 172585720 TCTTCAAAAGTTCAGAGATTTCC-ATTTTAACCATCTCAT-CAATGTTTCTACGTAAGTTTAAAATATTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29005472 70 - 170955103 TCTTCAAAAGTTCAGAGATTTCC-ATTTTAACCATCTCAT-CAATGTTTCTACGTAAGTTTAAAAtattttt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1854608 69 -   2157725 -CTTCAAAAGTTCAGAGA-TTCC-ATTTTAACCATCTCATCCAATGTTTCCACGTAAGTTTAAAATATTTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28303608 70 -  71996105 TCTTCAAAAGTTCAGAGATTTCC-ATTTTAACCATCTCAT-CAATGTTTCTACATAAGTTTAAAATATTTTT
i chlSab2.chr17            C 0 I 1630
s manLeu1.NW_012104165v1     1982939 70 +   2316924 TCTTCAAAAGTTCAGAGATTTCC-ATTTTAACCATCTCAT-CAATGTTTCTACGTAAGTTTAAAATATTTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1863866 70 -   3067355 TCTTCAAAAGATCAGAGATTTCC-ATTTTAACCATCTCAT-CAATATTTCTACATAAGTTTAAAATATTTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171392585 70 - 171630274 CCTTCAAAGGATCAGAGATTGCT-ATTTTAACCATCTCAT-CATTATTTCTACGTAAGTTTAAAATAGTTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            217919 70 -    375362 TCTTCAAAAGCTCAGAGATTGCC-ATTTTAACCATCTCAT-CATTATTTCTACATAAGTTTAAAATAGTTCT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      217073 70 -    373274 TCTTCAAAAGATCAGAGATTGCC-ATTTTAACCATCTCAT-CATTATTTCTACATAAGTTTAAAATAGTTCT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      155203 70 -    285216 CCTTCAAAACATCAGAGACTGCC-ATTTTAACCATCTCAT-CATTATTTCTACATAAGTTTAAAATAGCTCT
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             27893 71 -    302817 CCTTCAAAAGATTGAAGATTTCCTACTTTAATTATCCCAC-CAGTATATCTAAATATGTGCAAAATATTTTT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=84073.000000
s hg38.chr6_GL000254v2_alt    153587 10 +   4827813 GTTTTCACTT
s panTro5.chr6              29134746 10 + 175400573 GTTTTCACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29369148 10 + 173848474 GTTTTCACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5169289 10 +   6154872 ATTTTCACTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74170418 10 + 122973662 ATTTTCACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29344981 10 + 172585720 ATTTTCACTT
i rheMac8.chr4             C 0 I 626
s macFas5.chr4              29005542 10 - 170955103 attttcactt
i macFas5.chr4             C 0 I 1131
s cerAty1.NW_012001495v1     1854677 10 -   2157725 ATTTTCACTT
i cerAty1.NW_012001495v1   C 0 I 306
s manLeu1.NW_012104165v1     1983009 10 +   2316924 ATTTTCACTT
i manLeu1.NW_012104165v1   C 0 I 292
s colAng1.NW_012115566v1     1863936 10 -   3067355 ATTTTCACTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171392655 10 - 171630274 ATTTTCACTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            217989  9 -    375362 ATTTTCAC-C
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      217143 10 -    373274 ATTTTCACTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      155273 10 -    285216 ATTTTCACTT
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             27964 10 -    302817 ATTTTCACTT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e chlSab2.chr17             28303678 1630 -  71996105 I
e macNem1.NW_012011356v1     1980344 2216 -   2996164 I

a score=2032702.000000
s hg38.chr6_GL000254v2_alt    153597 231 +   4827813 TATGCCACTTCTTAAA---------ACTGAATTTCAGCAAGTACACTATATAAGTCCAGGATT--TAATTCTATTTATTTTAATTTAACTCATTTCAATAAACATTTATGGAATGCAAATGCCAATCACTATGCCAGCTACATGCATACAAAGATGAGGAAGAACCATCTGGTTCCCTTTCTCTCAATTTGTACCAACATCACTAGATCTGTGTGACAGTCTGGGAATAGGACTACACATAG
s panTro5.chr6              29134756 231 + 175400573 TATGCCACTTCTTAAA---------ACTGAATTTCAGCAAGTACACTATATAAGTCCAGGATT--TAATTCTATTTATTTTAATTTAACTCATTTCAATAAACATTTATGGAATGCAAATGCCAATCACTATGCCAGCTACATGCATACAAAGATGAGGAAAAACCATCTGGTTCCCTTTCTCTCAATTTGTACCAACATCACTAGATCTGTGTGACAGTCTGGGAATAGGACTACACATAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29369158 231 + 173848474 TATGCCACTTCTTAAA---------ACTGAATTTCAGCAAGTACACTATATAAGTCCAGGATT--TAATTCTATTTATTTTAATTTAACTCATTTCAATAAACATTTATGGAATGCAAATGCCAATCACTATGCCAGCTACATGCATACAAAGATGAGGAAAAACCATCTGGTTCCCTTTCTCTCAATTTGTACCAACATCACTAGATCTGTGTGACAGTCTGGGAATAGGACTACACATAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5169299 231 +   6154872 TATGCCACTTCTTAAA---------ACTGAATTTCAGCAAGTACACTATGTAAGTCCAGGATT--TAATTCTATTTATTTTAATTTAACTCATTTCAATAAACATTTATGGAATGCAAATGCCAATCACTATGCCAGCTACATGCATACAAAGATGAGGAAGAACCATCTGGTTCCCTTTCTCTCAATTTGTACCAACATCACTAGATCTGTGTGACAGTCTGGGAATAGGACTACACATAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74170428 231 + 122973662 TATGCCACTTCTTAAA---------ACTGAATTTCAGCGAGTACACTATATAAGTCCAGGATT--TAATTCTATTTATTTTAATTTAACTCATTTCAATAAACATTTATGGAATGCAAATGCCAATCACTATGCCAGCTACATGCATACAAAGATGAGGAAGAACCGTCTGGTTCCCTTTCTCTCCATTTGTACCAACATCACTAGATCTGTGTGACAGTCTGGGAATAGGACTACACATAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29345617 233 + 172585720 TATGCCACTTCTTAAA---------ACTGAATTTCAGCAAGTACACTATGTAAGTCCAGGATTTCTAATTCTATTTATTTTAATTTAATTCATTTCAATAAGCATTTATGGAATGCAAATGCCAATCATTATGCCAGCTACATGCATGCAAATATGAGGAAGAACTGTCCGGTTCCCTTTCTCTCAATTTGTACCAGCATCACTAGATCTTTGTGACAGTCTGGGAATAGGACTACACATAG
i rheMac8.chr4             I 626 C 0
s macFas5.chr4              29006683 233 - 170955103 TATGCCACTTCTTAAA---------ACTGAATTTCAGCAAGTACACTATGTAAGTCCAGGATTTCTAATTCTATTTATTTTAATTTAATTCATTTCAATAAGCATTTATGGAATGCAAATGCCAATCATTATGCCAGCTACATGCATGCAAATATGAGGAAGAACTGTCCGGTTCCCTTTCTCTCAATTTGTACCAGCATCACTAGATCTTTGTGACAGTCTGGGAATAGGACTACACATAG
i macFas5.chr4             I 1131 C 0
s macNem1.NW_012011356v1     1982560 233 -   2996164 TATGCCACTTCTTAAA---------ACTGAATTTCAGCAAGTACACTATGTAAGTCCAGGATTTCTAATTCTATTTATTTTAATTTAATTCATTTCAATAAGCATTTATGGAATGCAAATGCCAATCATTATGCCAGCTACATGCATGCAAATATGAGGAAGAACTGTCCGGTTCCCTTTCTCTCAATTTGTACCAGCATCACTAGATCTTTGTGACAGTCTGGGAATAGGACTACACATAG
i macNem1.NW_012011356v1   I 2216 C 0
s cerAty1.NW_012001495v1     1854993 233 -   2157725 TATGCCACTTCTTAAA---------ACTGAATTTCAGCAAGTACACTATGTAAGTCCAGGATTTCTAATTCTATTTATTTTAATTTAATTCATTTCAATAAACATTTATGGAATGCAAATGCCAATCATTATGCCAGCTACATGCATGCAAATATGAGGAAGAACTGTCTGGTTCCCTTTCTCTCAATTTGTACCAGCAGCACTAGATCTTTGTGACAGTCTGGGAATAGGACTATACATAG
i cerAty1.NW_012001495v1   I 306 C 0
s manLeu1.NW_012104165v1     1983311 233 +   2316924 TATGCCACTTCTTAAA---------ACTGAATTTCAGCAAGTACACTATGTAAGTCCAGGATTTCTAATTCTATTTATTTTAATTTAATTCATTTCAATAAACATTTATGGAATGCAAATGCCAATCATTATGCCAGCTACATGCATGCAAATATGAGGAAGAACTGTCCGGTTCCCTTTCTCTCAATTTGTACCAGCATCACTAGATCTTTGTGACAGTCTGGGAATAGGACTACACATAG
i manLeu1.NW_012104165v1   I 292 C 0
s colAng1.NW_012115566v1     1863946 233 -   3067355 TATGCCACTTCTTAAA---------ACTGAATTTCAGCAAGTACACTATGTAAGTCCAGGATTTCTAATTCTATTTATTTTAATTTAATTCATTTCAATAAACATTTATGGAATGCAAATGCCAATCATTATGCCAGCTACATGCATGCAAATATGAGGAAGAACTGTCTGGTTCCCTTTCTCTCAATTTGTACCAGCATCACTAGATCTTTGTGACAGTCTGGGAATAGGACTGCACATAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171392665 221 - 171630274 TATGCCATTTCTTACA---------ACTGAATTTCAGTAAATACACTGTATAAGTCCAGGATTTCTAATCCTATTTAT-----TTTAACTCATTTCAACAGACA-CTATGGAATGCAAGTGCTGACCAC-ATGCCAGCTGCAT-CCTACAGAGATGAGGAAGAACCATCTGGTTGCCTT----TCAATTCACGCTAACTTCACTAGATCTTCGTGACTGTCTGGGAACACAACTACACATAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            217998 227 -    375362 TATGCCACTTCTTACA---------ACTGAATTTCAGTAACTATACTATATAAGCCCAGGATTTCTAATCCTATTTAT-----TTTAACTCATTTCAATAGACA-TTATGGAATGCAAGTGCTGACCACAATGCCAGCTGCATGCATACAGAGATGAGGAAGAACCATCTGGTTGCCTTTATCTCAATTCATGCTAATTTCACTACATCTTCGTGACAGTCTGGGAATACAACTACACATAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      217153 227 -    373274 TATGCCACTACTTACA---------ACTGAATTTCAGTAAATATACTATATAAGTCCAGGATTTCTAATCCCATTTAT-----TTTAACTCATTTCAATAGACA-TTATGGAATGCAAGTGCTGACCACAACGCCAGCTGCATGCACACAGAGATGAGGAAGAACCATCTGGTTGCCTTTCTCTCAATTCACGCTAACTTCACTAGATTTTCGTGACAGTCTGGGAATACAACTATACATAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      155283 227 -    285216 TATGCCACTTCTTATA---------ACTGAATTTCAGTAAATATACTATATAAGTCCAGGATTTCTAATCCTATTTAT-----TTTAACTCATTTCAATACACA-TTATGGAATACAAGTGCTGACCACAATGCCAGCTGCATGCATACAGAGACGAGGAAGAACCATCTGGTTGCCTTTCTCTCAATTCACGCTAACTTCACTAGATCTTCATGACAGTCTGGGAATACAACTACACATAG
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             27974 210 -    302817 TATGCCATTTCAATAAGTACACTATATTGAATTTCAGTAAGTACACTATAT--------------------------------TTTAACTCATTTCAATAAACATTTACAGAACTCAAGTGCCAGACACTACACCAGGTACAAACTTACAAAGATGAGGAAGAACAGTGGAGTTGTCTTTCTGTGGATCTGCTCCAACATCACTAGATCTTTGTGGCAGTCTGGGAAGAGAACTAAACATAG
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e chlSab2.chr17             28303678 1630 -  71996105 I

a score=258353.000000
s hg38.chr6_GL000254v2_alt    153828 25 +   4827813 TGGTCCAGGTTTTGAACAGAGACAA
s panTro5.chr6              29134987 25 + 175400573 TGGTCCAGGTTTTGAACAGAGACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29369389 25 + 173848474 TGGTCCAGGTTTTGAACAGAGACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5169530 25 +   6154872 TGGTCCAGGTTTTGAACAGAGACAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74170659 25 + 122973662 TGGTCCAGGTTTTGAACAAAGACAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29345850 25 + 172585720 TGGTCCAGGTTTTGAACAAAGACAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29006916 25 - 170955103 TGGTCCAGGTTTTGAACAAAGACAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1982793 25 -   2996164 TGGTCCAGGTTTTGAACAAAGACAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1855226 25 -   2157725 TGGTCCAGGTTTTGAACAAAGACAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28305308 25 -  71996105 TGGTCCAGGTTTTGAACAAAGACAA
i chlSab2.chr17            I 1630 C 0
s manLeu1.NW_012104165v1     1983544 25 +   2316924 TGGTCCAGGTTTTGAACAAAGACAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1864179 25 -   3067355 TGGTCCAGGTTTTGAACAAAGACAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171392886 25 - 171630274 TGGTCCTGGCTTTAAACAAGGACAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            218225 25 -    375362 TGGTCCAGGCTTTAAAAAAGGGCAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      217380 25 -    373274 TGGTCCAGGCTTTAAAAAAGGACAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      155510 25 -    285216 TGGTACAGGCTTTAAACAAGAACAA
i aotNan1.NW_018494050v1   C 0 I 318
s dasNov3.JH561790             28184 24 -    302817 TGGTTGAGGTTTTGAACAAGGAAG-
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I

a score=200903.000000
s hg38.chr6_GL000254v2_alt    153853 18 +   4827813 GAAAACAATTTATTTCtt
s panTro5.chr6              29135012 18 + 175400573 GAAAACAATTTATTTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29369414 18 + 173848474 GAAAACAATTTATTTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5169555 18 +   6154872 GAAAACAATTTATTTCtt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74170684 18 + 122973662 GAAAACAATTTAtttctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29345875 18 + 172585720 GAAACCAATTTATTTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29006941 18 - 170955103 GAAACCAATTTATTTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1982818 18 -   2996164 GAAACCAATTTATTTCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1855251 18 -   2157725 GAAACCAATTTATTTCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28305333 18 -  71996105 GAAACCAATTTATTTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1983569 18 +   2316924 GAAACCAATTTATTTCTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1864204 18 -   3067355 GAAACCAATTTATTTCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171392911 18 - 171630274 GAAAACAATTTATTTCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            218250 18 -    375362 GAAAACAATTTATTTCTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      217405 18 -    373274 GAAAACAAtttatttctt
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      155853 18 -    285216 GAAAACAATTTATTTCTT
i aotNan1.NW_018494050v1   I 318 C 0
s dasNov3.JH561790             28208 18 -    302817 GAAAATATTTCACTTCTC
i dasNov3.JH561790         C 0 I 155
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I

a score=419166.000000
s hg38.chr6_GL000254v2_alt    153871 51 +   4827813 ttttaatttttattttagttttagttttagt--------------tttttgaggaggggtctcac
s panTro5.chr6              29135030 51 + 175400573 TTTTAAtttttatttttgttttagttttagt--------------tttttgaggaggggtctcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29369432 51 + 173848474 TTTTAAtttttatttttgttttagttttagt--------------tttttgaggaggggtctcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5169573 51 +   6154872 ttttaatttttattttagttttagttttagt--------------tttttgaggaggggtctcac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74170702 45 + 122973662 ttttcattttta------ttttagttttagt--------------tttttgaggaggggtctcac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29345893 51 + 172585720 TTTTCGtttttattttatttttagttttagt--------------tttttgaggaggggtctcac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29006959 51 - 170955103 TTTTCAtttttattttatttttagttttagt--------------tttttgaggaggggtctcac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1982836 51 -   2996164 TTTTCAtttttattttatttttagttttagt--------------tttttgaggaggggtctcac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1855269 51 -   2157725 TTTTCAtttttattttatttttagttttagt--------------tttttgaggaggggtctcac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28305351 51 -  71996105 TTTTCAtttttattttatttttagttttagt--------------tttttgaggagggttctcac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1983587 51 +   2316924 TTTTCttttttattttatttttatttttagt--------------tttttgaggaggggtctcac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1864222 51 -   3067355 TTTTCAtttttattttatttttagttttagt--------------tttttgaggagtggtcttac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171392929 48 - 171630274 TATTCATTTTTATTTTAGttttagtttt-----------------tttttgaggcggggtctcac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            218268 65 -    375362 TATTCATTTTTATTTTAGTTTAGTTTTTTGttttttgttttttgatttttgaggtgggttctcat
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      217423 46 -    373274 t-ttcattattattttagttttaggtt------------------tttttgaggtggggtctcac
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      155871 55 -    285216 TATTCATTTTTATTTTAGTTTTAGttttagttttt----------tttttgaggcagggtctcac
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             28226 155 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I

a score=479742.000000
s hg38.chr6_GL000254v2_alt    153922 48 +   4827813 tctgttgcc-caggctggagtgcagtgg-----------------------------------------catgaacacagctcactgcaa
s panTro5.chr6              29135081 48 + 175400573 tctgttgcc-caggctggagtgcagtgg-----------------------------------------catgaacacagctcactgcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29369483 48 + 173848474 tctgttgcc-caggctggagtgcagtgg-----------------------------------------catgaacacagctcactgcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5169624 48 +   6154872 tctgttgcc-caggctggagtgcagtgg-----------------------------------------catgaacacagctcactgcaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74170747 48 + 122973662 tctgttgcc-caggctggagtgcagtgg-----------------------------------------catgaacacagctcactgcaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29345944 48 + 172585720 tctgtcgcc-caggctagagtgcagtgg-----------------------------------------catgaacatagctaactgcaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29007010 48 - 170955103 tctgttgcc-caggctagagtgcagtgg-----------------------------------------catgaacatagctaactgcaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1982887 48 -   2996164 tctgttgcc-caggctagagtgcagtgg-----------------------------------------catgaacatagctaactgcaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1855320 48 -   2157725 tctgttgcc-caggctagagtgcagtgg-----------------------------------------catgaacatagctcactgcaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28305402 48 -  71996105 tctgttgcc-caggctagagtgcagtgg-----------------------------------------catgaacacagctcactgcaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1983638 48 +   2316924 tctgttgcc-caggctagagtgcagtgg-----------------------------------------catgaacatagctcactgcaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1864273 48 -   3067355 tctgttgcc-caggctggagtgcagtgg-----------------------------------------catgaacacagctcactgcaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171392977 48 - 171630274 tgtcttgcc-caggctggagtgcaacag-----------------------------------------tatgaacatggctcactgcaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            218333 48 -    375362 tctcttccc-caggctggagtgaaatgg-----------------------------------------tatgaacatggctcactgcaa
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      217469 48 -    373274 tctcttacc-caggctggagtgcaatgg-----------------------------------------tatgaacatggctcactgcaa
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      155926 48 -    285216 tgtcttacc-caggctggagtgcaatgg-----------------------------------------tatgaacatggctcactgcaa
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             28381 90 -    302817 tctgttgccacatgttggagcaagatggctgcccaagtctgcaagggttcagacttcctcttaaggctccatggtcccagcttattccaa
i dasNov3.JH561790         I 155 I 231
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I

a score=1310980.000000
s hg38.chr6_GL000254v2_alt    153970 155 +   4827813 cctattcctcctgggctcaagtgattctcccacctcagcctcccaagtagccaggattacaggcctgcaccaccacgcctagctaattta-ttttttgtagagacaagggtctcactatgttgcccaggctggtctcgaactcttcgactcaagtg
s panTro5.chr6              29135129 155 + 175400573 cctattcctcctgggctcaagtgattctcccacctcagcctcccaagtagccaggattacaggcctgcgccaccacgcctagctaattta-ttttttgtagagacaagggtctcactatgttgcccaggctggtctcgaactcttcgactcaagtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29369531 155 + 173848474 cctattcctcctgggctcaagtgattctcccacctcagcctcccaagtagccaggattacaggcctgcgccaccacgcctagctaattta-ttttttgtagagacaagggtctcactatgttgcccaggctggtctcgaactcttcgactcaagtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5169672 155 +   6154872 cctattcctcctgggctcaagtgattctcccacctcagcctcccaagtagccaggattacaggcctgcgccaccacgcctagctaattta-ttttttgtagagacaagggtctcactatgttgcccaggctggtctcgaactcttcgactcaagtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74170795 155 + 122973662 cctattcctcctgggctcaagtgattttcccacctcagcctcccaagtagccaggatgacaggcctgcgccaccacacctagctaattta-ctttctgtagagacaagggtctcactatgttgcccaggctggtatcgaactcttcgactcaagtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29345992 148 + 172585720 cctgttcctcttgggctcaagtgattctcccacctcagcctcccaagtagcaaggattacaggcctgcgccaccacgcctagctaattta-tttttcgtagagataagggt-------tgttgcccagactggtctcgaactcttggactcaagtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29007058 148 - 170955103 cctgttcctcctgggctcaagtgattctcccacctcagcctcccaagtagcaaggattacaggcctgcgccaccacgcctagctaattta-tttttcgtagagacaagggt-------tgttgcccagactggtctcgaactcttggactcaagtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1982935 148 -   2996164 cctgttcctcctgggctcaagtgattctcccacctcagcctcccaagtagcaaggattacaggcctgcgccaccacgcctagctaattta-tttttcgtagagacaagggt-------tgttgcccagactggtctcgaactcttggactcaagtg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1855368 148 -   2157725 cctgttcctcctgggctcaagtgattctcccacctcagcctcccaagtagcaaggattacaggcctgcgccaccacgcctagctaattta-tttttcatagagacaagggt-------tgttgcccagactggtctcgaactcttggactcaagtg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28305450 155 -  71996105 cctgttcctcctgggctcaagtgattctcccacctcagcctcccaagtagcaaggattacaggcctgcgccaccacgcctagcttattta-tttttcgtagaggcaagggtctccctatgttgcccagactggtctcgaactcttggactcaagtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1983686 148 +   2316924 cctgttcctcctgggctcaagtgattctctcacctcagcctcccaagtagcaaggattacaggcctgcgccaccacgcctagctaattta-tttttcgtagagacaagggt-------tgttgcccagactggtctcgaactcttggactcaagtg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1864321 155 -   3067355 gctattcctcctgggctcaagtgattctcccatctcagcctcccaagtagccaggattacaggcctgtgccaccatgcctagctaattta-tttttcgtagagacaagggtctcactatgttgcccagactggtctcgaattcttggactcaagtg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171393025 125 - 171630274 cttcta-------------------cctcccacctcagccttccaatcagccagaactacaggcctgcaccaccacacctgggtaattta-ttttttgtagagaaaa-----------tgttgcccaggctggtctcaaactcttgcactcaagtg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            218381 141 -    375362 cctctacctcctgggttcaggtgatcctcccacctcagccttccaatcagccagaactacaggcctgtgccaccacacctgggtaattaatttttttgtagagaaaa-----------tgttgcccaggctg----caaactcttgcactcaagtg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      217517 145 -    373274 cctctacctcctgggttcaggtgatccccccacctcagccttccagtcagccagaactacaggcctgcgccaccatgcctgggtaatttatttttttatagagaaaa-----------tgttgcccaggctggactcaaactcctgcactcaagtg
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      155974 128 -    285216 cctctaccttctgggttcaagtgatcctcccacctcagccttccaatcag----------------gcgccaccacgcctgggtaattta-ttttttgcagagaaaa-----------cgttgcccaggctggtctcaaactcttgcactcaaggg
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             28471 231 -    302817 I
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I

a score=3066952.000000
s hg38.chr6_GL000254v2_alt    154125 319 +   4827813 atcctcctgcctcagcc---------tctcaa--aatgctgtgatt-------acaggtgtgaa--------------------ccactgcacccag---------------------------ccGACAATT-------GATGTCTTAATACCTTTCAACTGATACCCAGTATTTTATAAGCTTTATTGGATATAGTGAGCATC---TTTTCCTGAAAGAGAGAGCAGGGAATCACAAATATTACAAAGCTCTGTTT-TCACAAAGGAAGTCTCAGGAGTGAGTG--------ACCATTTCGCCTACCCTCTGAATATCAAAGTTTTCAAACATCTACAGGCTCACACAAAATACTCTTCATTTCCCATCTAAGAGTCG----GGAACTTAGAAGTGGTCACTGGG
s panTro5.chr6              29135284 318 + 175400573 atccttctgcctcagcc---------tcccaa--aatgctgtgatt-------acaggtgtgaa--------------------ccactgcacccag---------------------------ccGACAATT-------GATGTCTTAATATCTTTCAACTGATACCCAGTATTTTATAAGCCTTATTGGATATAGTGAGCATC---TTTTCCTGAAAGAGAGAGCAGGGAATCACAAATATTACAAAGCTCTGTTT--CACAAAGGAAGTCTCAGGAGTGAGTG--------ACCATTTCGCCTACCCTCTGAATATCAAAGTTTTCAAACGTCTACAGGCTCACACAAAATACTCTTCATTTCCCATCTAAGAGTCG----GGAACTTAGAACTGGTCACTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29369686 318 + 173848474 atccttctgcctcagcc---------tcccaa--aatgctgtgatt-------acaggtgtgaa--------------------ccactgcacccag---------------------------cTGACAATT-------GATGTCTTAATATCTTTCAACTGATACCCAGTATTTTATAAGCCTTATTGGATATAGTGAGCATC---TTTTCCTGAAAGAGAGAGCAGGGAATCACAAATATTACAAAGCTCTGTTT--CACAAAGGAAGTCTCAGGAGTGAGTG--------ACCATTTCGCCTACCCTCTGAATATCAAAGTTTTCAAACGTCTACAGGCTCACACAAAATACTCTTCATTTCCCATCTAAGAGTCG----GGAACTTAGAACTGGTCACTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5169827 320 +   6154872 atcctcctgcctcagcc---------tcccaa--aatgctgggatt-------acaggtgtgaa--------------------ccactgcacccag---------------------------ccGACAATT-------GATTTCTTAATACCTTTCAACTGATACCCAGTATTTTATAAGCCTTATTGGATATAGTGAGCATC---TTTTCCTGAAAGAGAGAGCAGGGAATCACAAATATTACAAAGCTCTGTTTTTCACAAAGGAAGTCTCAGGAGTGAGTG--------ACCATTTCGCCTACCCTCTGAATATCAAAGTTTTCAAACATCTACAGGCTCACACAAAATACTCTTCATTTCCCATCTAAGAGTGG----GGAACTTAGAACTGGTCACTGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74170950 319 + 122973662 attctcctgcctcagcc---------tcccaa--aatgctgggatt-------acaggtgtgaa--------------------ccactgcacccag---------------------------ccGACAATT-------GATTTCTTAATACCTTTCAACTGATACCCAGTATTTTATAAGCTTTTTTGGATATAGTGAGCATC---TTTTCCTGAGAGAGACAGCAGGGAATCATAAATATTACAAAGCTCTGTTT-TCACAAAGGAAGTCTCAGGAGTGAGTG--------ACAATTTCGCCTACCCTCTGAATATCAAAGTTTTCAAACATCTACAGGCTCAGACAAAATACTCTTCATTTCCCATCTAAGAGTCG----GGAACTTAGAACTGGTCACTGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29346140 317 + 172585720 atcctcctgcctcagcc---------tcccaa--aacgctgggatt-------acaagtgtgaa--------------------ccactgcacccag---------------------------ccAACAATT-------GATTTCTTAATACCTTTCAAGTAATACCCAGTATTTTATAAGCCTTTCTGGATATAGTGAGCATC---TTTTCCTGAAAGAGAGAGCAGGGAATCACAAATATTACAAAGCTCTGTTT---ACAAAGGAAGTCTCAGAAGTAAGTG--------ACCATTTTGCCTACCCTCTGAATATCAAAGTTTACAAATATCTGCAGGCTTAGACAAAATACTCTTCGTTTCCCACCTAAGAGTTA----GGAATTTAGAACTGGTCACTGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29007206 317 - 170955103 atcctcctgcctcagcc---------tcccaa--aatgctgggatt-------acaagtgtgaa--------------------ccactgcacccag---------------------------ccAACAATT-------GATTTCTTAATACCTTTCAAGTAATACCCAGTATTTTATAAGCCTTTCTGGATATAGTGAGCATC---TTTTCCTGAAAGAGAGAGCAGGGAATCACAAATATTACAAAGCTCTGTTT---ACAAAGGAAGTCTCAGAAGTAAGTG--------ACCATTTTGCCTACCCTCTGAATATCAAAGTTTACAAATATCTGCAGGCTTAGACAAAATACTCTTCGTTTCCCACCTAAGAGTCA----GGAATTTAGAACTGGTCACTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1983083 317 -   2996164 atcctcctgcctcagcc---------tcccaa--aatgttgggatt-------acaagtgtgaa--------------------ccactgcacccag---------------------------ccAACAATT-------GATTTCTTAATACCTTTCAAGTAATACCCAGTATTTTATAAGCCTTTCTGGATATAGTGAGCATC---TTTTCCTGAAAGAGAGAGCAGGGAATCACAAATATTACAAAGCTCTGTTT---ACAAAGGAAGTCTCAGAAGTAAGTG--------ACCATTTTGCCTACCCTCTGAATATCAAAGTTTACAAATATCTGCAGGCTTAGACAAAATACTCTTCATTTCCCACCTAAGAGTCA----GGAATTTAGAACTGGTCACTGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1855516 317 -   2157725 atcctcctgcctcagcc---------tcccaa--aatgctgggatt-------acaagtgtgaa--------------------ccactgcacccag---------------------------ccAACAATT-------GATTTCTTAATACCTTTCAAGTAATACCCAGTATTTTATAAGCCTTTCCGGATATAGTGAGCATC---TTTTCCTGAAAGAGAGAGCAGGGAATCACAAATATTACAAAGCTCTGTTT---ACAAAGGAAGTCTCAGAAGTAAGTG--------ACCATTTTGCCTACCCTCTGAATATCAAAGTTTACAGATATCTGCAGGCTTAGACAAAATACTCTTCGTTTCCCACCTAAGAGTCA----GGAATTTAGAACTGGTCACTGGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28305605 317 -  71996105 atcctcctgcctcagcc---------tcccaa--aatgctgggatt-------acaggtgtgaa--------------------ccactgcacccag---------------------------ccAACAATT-------GATTTCTTAATACCTTTCAAGTAATACCCAGTATTTTATAAGCCTTTCTGGATATAGTGAGCATC---TTTTCCTGAAAGAGAGAGTAGGGAATCACAAATATTACAAAGCTCTGTTT---ACAAAGGAAGTCTCAGAAGTAAGTG--------ACCATTTTGCCTACCCTCTGAATATCAAAGTTTACAAATATCTGCAGGCTTAGACAAAATACTCTTCGTTTCCCACCTAAGAGTCA----GGAATTTAGAACTGGTCACTGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1983834 317 +   2316924 atcctcctgcctcagcc---------tcccaa--aatgctgggatt-------acaagtgtaaa--------------------ccactgcacccag---------------------------ccAACAATT-------GATTTCTTAATACCTTTCAAGTAATACCCAGTATTTTATAAACCTTTCTGGATATAGTGAGCATC---TTTTCCTGAAAGAGAGAGCAGGGAATCACAAATATTACCAAGCTCTGTTT---ACAAAGGAAGTCTCAGAAGTAAGTG--------ACCATTTTGCCTACCCTCTGAATATCAAAGTTTACAAATATCTGCAGGGTTAGACAAAATACTCTTCGTTTCCCACCTAAGAGTCA----GGAATTTAGAACTGGTCACTGGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1864476 317 -   3067355 atcttcctgcctcagcc---------tcccaa--aatgctgggatt-------acaggtgtgaa--------------------ccactgcacccag---------------------------ccAACAATT-------GATTTCTTAATACCTTTCAACTGATACCCAGTATTTTATAAGCCTTTTTGGATATAGTGAGCATC---TTTTCCTGAAAGAGAGAGCAGGGAATCACAAATATTACAAAGCTCTGTTT---ACAAAGGAAGTCTCAGGAGTATGTG--------ACCATTTTGCCTACCCTCTGAATACCAAAGTTTACAAATACCTGCAGGCTTAGACAAAATACTCTTCGCTTCCCACCTAAGAGTCA----GGAAGTTAGAACTGGTCACTGGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171393150 284 - 171630274 atcctcttacctcaacc---------tccc----------------------------tgtgag--------------------ccactgcacccag---------------------------ccGACAATT-------GATTTCATAATACCTTTCAACTGATACCCAGTAGTTTATAAGTCTTTTTGGATATAGTGAGCATC---TTTTCTTG-AACAGAGAACAGGGAATCACAAATATTA-AAAGCTCTATTT---TCACA--AAGTCTCAGGAGTGAGTG--------ACTATTTTGCCTGCCTTCTGAATATCCAAGTTTTCAAATATCTACAGGCTCAGACAAAATA----------CCCACCTAAGAGTCG----GGAACTTAGAACTGGTCACTGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            218522 296 -    375362 atcctcttgcctcagcc---------tccc----------------------------tgtgag--------------------ccactgcacccag---------------------------ccAACAATT-------GATTTCTTAATACCTTTCAACTGATACCCAGTATTTTATAAGTCTTTTTGGATATAGTGAGCATC---TTTTCTTGAAACAGAGAACAGGGAATCACAAATATTACAAAGCTCTATTT---TCACA--AAGTCTCAGGAGTGAGTG--------ACCATTTTGCCTGCCTTCTGAACATCCAAGTTTTCAAATATCTACAGGCTTAGACAAAATACTCTTCACTTCCCACCTAAGAGTTG----GTAACTTAGAACTGGTCACTGGG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      217662 296 -    373274 atcctcttgcctcagcc---------tccc----------------------------tgtgaa--------------------ctactgcacccgg---------------------------ccGTCAATT-------GATTTCTTAATACCTTTCAACTGATACCCAGTATTTTATAAGTGTTTTTGGATATAGTGAGCATC---TTTTCTTGAAACAGAGAACAGCGAATCACAAATATTACAAAGCTCTATTT---TCACA--AAGTCTCAGGAGTGAGTG--------ACCATTTTGCCTGCCTTCTGAATATCCAAGTTTTCAAATATCTACAGACTCAGACAAAATACTCTTCATTTCCCACCCAAGAGTTG----GGAACTTAGAACTGGTCACTGGg
i cebCap1.NW_016108108v1   C 0 I 1222
s aotNan1.NW_018494050v1      156102 296 -    285216 atcctcttgcctcagcc---------tccc----------------------------tatgag--------------------ccactgcacccgg---------------------------ccGACAACT-------GATTTCTTAATACCTTTCAACTGATACCCAGTATTTTATAAGTCTTTTTGGATATAGTGAGCATC---TTTTCTTGAAACAGAGAACAGGGAATCACAAATATTACAAAGCTCTATTT---TCAGA--AAGTCTCAGGAGTGAGTG--------ACCATTTTGCCTGCCTTCTGAATATCAAAGTTTTCAAATATCTACAGGCTCAGACAAAACACTCTTCATTTCCCACCTAAGAGTCG----GGAACTTAGAACTGGTCACTGGG
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             28702 395 -    302817 atcctactgttatggcccaatcaaagtcttaatcaatatcataatttaatcaagcaaaagtgaaacctctgaatccaatacaatctaatacacccagaggaacaaatcagtttacaaacataatccaatatctatttttggaattcataaaatataccaa---acACCCAG-----TATAAGCCTCTTTGGATGTAACAAATGTCTTTTTTTCCTGTAACAGAGAGCAGGGGATCATGAATATCACAAAGCATAGTCT-TTACAAGGGAACTTTCAAGAGTGGATGAAACTTTTAATATTTCACCTGTCTTCAAAATACTGAAGTTTTCAAATATCTACAAACTCAAATGAAATACTCTTCATTT-CTACCTAAGAGTCAGGTTGGAGCTTGGAACTGATCACTA--
i dasNov3.JH561790         I 231 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I

a score=551051.000000
s hg38.chr6_GL000254v2_alt    154444 59 +   4827813 TGAGACTGACCCTTTCCTTAAGGAGGATAATGACTGAAAAC--ACATTTATTTCTGCTAAA
s panTro5.chr6              29135602 59 + 175400573 TGAGACTAACCCTTTCCTTAAGGAGGATAATGACTGAAAAC--ACATTTATTTCTGCTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29370004 59 + 173848474 TGAGACTAACCCTTTCCTTAAGGAGGATAATGACTGAAAAC--ACATTTATTTCTGCTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5170147 59 +   6154872 TGAGACTGACCCTTTCCTTAAGGAGGATAATGACTGAAAAC--ACATTTATTTCTGCTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74171269 59 + 122973662 TGAGACTGACCCTTTCCTTAAGGAGGATAATGACTGAAAAC--ACATTTATTTCTGCTAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29346457 57 + 172585720 TGAGACTGACCCTTTCCTTAAGGAGGATAATGACTGAAA----ACATTTATTTCTGCTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29007523 57 - 170955103 TGAGACTGACCCTTTCCTTAAGGAGGATAATGACTGAAA----ACATTTATTTCTGCTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1983400 57 -   2996164 TGAGACTGACCCTTTCCTTAAGGAGGATAATGACTGAAA----ACATTTATTTCTGCTAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1855833 57 -   2157725 TGAGACTGACCCTTTCCTTAAGGAGGATAATGACTGAAA----ACATTTATTTCTGCTAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28305922 57 -  71996105 TGAGACTGACCCTTTCCTTAAGGAGGATAATGACTGAAA----ACATTTATTTCTGCTAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1984151 57 +   2316924 TGAGACTGACCCTTTCCTTAAGGAGGATAATGACTGAAA----ACATTTATTTCTGCTAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1864793 57 -   3067355 TGAGACTGACCCTTTCCTTAAGGAGGATAATGACTGAAA----ACATTTATTTCTGCTAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171393434 59 - 171630274 TGAGACTGACTCCTTCCTTAGGGAGTATGATGACTGCAAAC--ATATTTATTTCTGCTAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            218818 59 -    375362 TGAGACTGACTCCTTCCTTAAGGAGGATGTTGACTGAAAAC--ACATTTATTTCTGCTAAA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      156398 59 -    285216 TGAGACTGACTCCTTCCTTAAGGAGGATGATGACTGAAAAC--ACATTTATTTCTGCCAAA
i aotNan1.NW_018494050v1   C 0 I 5
s dasNov3.JH561790             29097 59 -    302817 --AGAATGACACCTTCCTGAGGGACAATAATGACTGAAAACTTACGTATATCTCTATTAAG
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e cebCap1.NW_016108108v1      217958 1222 -    373274 I

a score=22780.000000
s hg38.chr6_GL000254v2_alt    154503 3 +   4827813 ACA
s panTro5.chr6              29135661 3 + 175400573 ACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29370063 3 + 173848474 ACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5170206 3 +   6154872 ACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74171328 3 + 122973662 ACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29346514 3 + 172585720 ACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29007580 3 - 170955103 ACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1983457 3 -   2996164 ACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1855890 3 -   2157725 ACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28305979 3 -  71996105 ACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1984208 3 +   2316924 ACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1864850 3 -   3067355 ACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171393493 3 - 171630274 TCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            218877 3 -    375362 TCA
i saiBol1.JH378348         C 0 C 0
s dasNov3.JH561790             29156 2 -    302817 -CA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      156457 5 -    285216 I
e cebCap1.NW_016108108v1      217958 1222 -    373274 I

a score=2206170.000000
s hg38.chr6_GL000254v2_alt    154506 354 +   4827813 AGTTCTAGCCAACCCATTTCCTGGGCATGCTCTTGACAAATTTACTAA-TGTTAAGTGAGGCAAGAAGCTGCCATTCAAACATTTCAAAATTGTTATATTCAAAATATTTCCCTTCTATATCTACTCTCTAAAGGTCAATTACTAGAGAAACACAAAGTTTTACACACATTCATCAGAGGTATATATCTTTTTTCTCTG---ATATGGGTTTTCTTTTTAATGTCTAAAAAGG-------------------------------------------------------------------TTCTGATGGGAAATAAGACCTTCATTTTGAGTAAAGCATTTTCCATATTCAGGGCAATGAGGAAGTCTTTCCCCTGTATGAATGTTGGGATAGTTAATGAAGTGTGAGCTCTCAATGCAGACTTC
s panTro5.chr6              29135664 354 + 175400573 AGTTCTAGCCAACCCATTTCCTAGGCATGCTCTTGACAAATTTACTAA-CGTTAAGTGAGGCAAGAAGCTGCCATTCAAACATTTCAAAATTGTTATATTCAAAATATTTCCCTTCTATATCTACTCTCTAAAGGTCAATTACTAGAGAAACACAAAGTTTTACACACATTCATCAGAGGTATATATCTTTTTTCTCTG---GTATGGGTTTCCTTTTTAATGTCTAAAAAGG-------------------------------------------------------------------TTCTGATGGGAAATAAGACCTTCATTTTGAGTAAAGCATTTTCCATATTCAGGGCAATGAGGAAGTCTTTCCCCTGTATGAATGTTGGGATAGTTAATGAAGTGTGAGCTCTCAATGCAGACTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29370066 354 + 173848474 AGTTCTAGCCAACCCATTTCCTAGGCATGCTCTTGACAAATTTACTAA-CGTTAAGTGAGGCAAGAAGCTGCCATTCAAACATTTCAAAATTGTTATATTCAAAATATTTCCCTTCTATATCTACTCTCTAAAGGTCAATTACTAGAGAAACACAAAGTTTTACACACATTCATCAGAGGTATATATCTTTTTTCTCTG---GTATGGGTTTCCTTTTTAATGTCTAAAAAGG-------------------------------------------------------------------TTCTGATGGGAAATAAGACCTTCATTTTGAGTAAAGCATTTTCCATATTCAGGGCAATGAGGAAGTCTTTCCCCTGTATGAATGTTGGGATAGTTAATGAAGTGTGAGCTCTCAATGCAGACTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5170209 354 +   6154872 AGTTCTAGCCAACCCATTTCCTGGGCATGCTCTTGACAAATTTACTAA-TGTTAAGTGAGGCAAGAAGCTGCCATTCAAACATTTCAAAATTGTTATATTCAAAATATTTCCCTTCTATATCTACTCTCTAAAGGTCAATTACTAGAGAAACACAAAGTTTTACACACATTCATCAGAGGTATATATCTTTTTTCTCTG---GTATGGGTTTTCTTTTTAATGTCTAAAAAGG-------------------------------------------------------------------TTCTGATGGGAAATAAGACCTTCATTTTGAGTAAAGCATTTTCCATATTCAGGGCAATGAGGAAGTCTTTCCCCTGTATGAATGTTGGGATAGTTAATGAAGTGTGAGCTCTCAATGCAGACTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74171331 354 + 122973662 AGTTCTAGGCAACCCATTTCCTGGGCATGTTCTTGACAAATTTGCTAA-TGTTAAGTGAGGCAAGAAGCTGCCATTCAAACATTTCAATATTGTTATATTCAAGATATTTCCCTTCTATATCTACTCTCTAAAGGTCAATTACTAGAGAAACCCAAAGTTTTACACACATTCATCAGAGGTATAAATCTTTTTTCTCTG---ATACGGGTTTTCTTTTTAATGTCTAAAAAGG-------------------------------------------------------------------TTCTGATGGGAAATAAGACCTTCATTTTGAGTAAAGCATTTTCCATATTCAGGGCAACGAGGAAGTCTTTCCCCTGTATGAATGTTGGGATAGTTAATGAAGTGTGAGCTCTCAATGCAGACTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29346517 354 + 172585720 AGTTCTAGCCAACTCATTTCCTGGGCATGCTCTTGACAAATTTGCTAA-TATTAAGTGAGGCAAAAAGCTGCCATTCAAACATTTCAAAATTGTTATATTCAAGATATTTCCCTTCCATATCTACTCTCTAAAGGTCAATAACTAGAGAAACCCAAAGTTTTACACACATTCATCAGAGCTATAAATCTTTTTTCTCTG---ATATGGGTTTTCTTTTTAATGTCTAAAAAGG-------------------------------------------------------------------TTCTAATGGGAAATAAGACCTTCATTTTGAGTAAAGCATTTTCCATGTTCAGGGCAATGATGAAGTCTTTTCCCTGTATGAATTTTGGGATAGTTAATGAAGTGCGAGCTCTCAATGCAGGCTTT
i rheMac8.chr4             C 0 I 327
s macFas5.chr4              29007583 354 - 170955103 AGTTCTAGCCAACTCATTTCCTGGGCATGCTCTTGACAAATTTGCTAA-TATTAAGTGAGGCAAAAAGCTGCCATTCAAACATTTCAAAATTGTTATATTCAAGATATTTCCCTTCCATATCTACTCTCTAAAGGTCAATTACTAGAGAAACCCAAAGTTTTACACACATTCATCAGAGCTATAAATCTTTTTTCTCTG---ATATGGGTTTTCTTTTTAATGTCTAAAAAGG-------------------------------------------------------------------TTCTAATGGGAAATAAGACCTTCATTTTGAGTAAAGCATTTTCCATGTTCAGGGCAATGATGAAGTCTTTTCCCTGTATGAATTTTGGGATAGTTAATGAAGTGCGAGCTCTCAATGCAGGCTTT
i macFas5.chr4             C 0 I 316
s macNem1.NW_012011356v1     1983460 354 -   2996164 AGTTCTAGCCAACTCATTTCCTGGGCATGCTCTTGACAAATTTGCTAA-TATTAAGTGAGGCAAAAAGCTGCCATTCAAACATTTCAAAATTGTTATATTCAAGATATTTCCCTTCCATATCTACTCTCTAAAGGTCAATTACTAGAGAAACCCAAAGTTTTACACACATTCATCAGAGCTATAAATCTTTTTTCTCTG---ATATGGGTTTTCTTTTTAATGTCTAAAAAGG-------------------------------------------------------------------TTCTAATGGGAAATAAGACCTTCATTTTGAGTAAAGCATTTTCCATGTTCAGGGCAATGATGAAGTCTTTTCCCTGTATGAATTTTGGGATAGTTAATGAAGTGCGAGCTCTCAATGCAGGCTTT
i macNem1.NW_012011356v1   C 0 I 326
s cerAty1.NW_012001495v1     1855893 354 -   2157725 AGTTCTAGCCAACTCATTTCCTGGGCATGCTCTTGACAAATTTGCTAA-TATTAAGTGAGGCAAAAAGCTGCCATTCAAACATTTCAAAATTGTTATATTCAAGATATTTCCCTTCCATATCTACTCTCTAAAGGTCAATTACTAGAGAAACCCAAAGTTTTATACACATTCATCAGAGCTATAAATCTTTTTTCTCTG---ATATGGGTTTTCTTTTTAATGTCTAAAAAGG-------------------------------------------------------------------TTCTAATGGGAAATAAGACCTTCATTTTGAGTAAAGCATTTTCCATGTTCAGGGCAATGATGAAGTCTTTCCCCTGTATGAATTTTGGGATAGTTAATGAAGTGCGAGCTCTCAATGCAGGCTTT
i cerAty1.NW_012001495v1   C 0 I 319
s chlSab2.chr17             28305982 354 -  71996105 AGTTCTAGCCAACTCATTTCCTGGGCATGCTCTTGACAAATTTGCTAA-TATTAAGTGAGGCAAAAAGCTGCCATTCAAACATTTCAAAATTGTTATATTCAAGATATTTCCCTTCCATATCTACTCTCTAAAGGTCAATTACTAGAGAAACCCAAAGTTTTACACACATTCATCAGAGCTATAAATCTTTTTTCTCTG---ATACGGGTTTTCTTTTTAATGTCTAAAAAGG-------------------------------------------------------------------TTCTAATGGGAAATAAAACCTTCATTTTGAGTAAAGCATTTTCCATGTTCAGGGCAATGATGAAGTCTTTCCCCTGTATGAATTTTGGGATAGTTAATGAAGTGGGAGCTCTCAATGTACGCCTT
i chlSab2.chr17            C 0 I 322
s manLeu1.NW_012104165v1     1984211 354 +   2316924 AGTTCTAGCCAACTCATTTCCTGGGCATGCTCTTGACAAATTTGCTAA-TATTAAGTGAGGCAAAAAGCTGCCATTCAAACATTTCAAAATTGTTATATTCAAGATATTTCCCTTCCATATCTACTCTCTAAAGGTCAATTACTAGAGAAACCCAAAGTTTTACACACATTCATCAGAGCTATAAATCTTTTTTCTCTA---ATATGGGTTTTCTTTTTAATGTCTAAAAAGG-------------------------------------------------------------------TTCTAATGGGAAATAAGACCTTCATTTTGAGTAAAGCATTTTCCATGTTCAGGGCAATGATGAAGTCTTTCCCCTGTATGAATTTTGGGATAGTTAATGAAGTGCGAGCTCTCAATGCAGGCTTT
i manLeu1.NW_012104165v1   C 0 I 326
s colAng1.NW_012115566v1     1864853 336 -   3067355 AGTTCTAGCCAACTCATTTCCTGGGCATGCTCTTGACAAATTTGCTAATTATTAAGTGAGGCAAAAAGCTGCCATTCAAACATTTCAAAATTGTTATATTCAAGATATTTCCCTTCCATATCTACTCTCTAAAGGTCAATTACTAGAGAAACCCAAAATTTTACACACATTCATCAGAGCTATAAATCTTTTTTCTCTG---ATATGGGTTTTCTTTTTAATGTCTAAATAAG--------------------------------------------------------------------------------------CTTCATTTTGAGTAAAGCATTTTCCATGTTCAGGGCAATGATGAAGTCTTTCCCCTGTATGAATTTTGGGATAGTTAATGAAGTGTGAGCTCTCAATGCAGGTTTT
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH561790             29158 413 -    302817 AGTTCTAGCCAATCCA-CTCCTGGGCATACCCTTGATGGATATTCTAA-TG-TAAGTAAGGCAAGAAGCTACCATTGAAACACTTTACAATTAT--TATTCAAGGTATTTTCCTCCAATATTTACTTTATAAAGGTCAATTATGAGTGAAACGTAGACTTTTACACACATTCATCAGAGTTGTCTTTTCCTGTTTAATGTCTGTGTGTGTTTGTTTTTTAATGTTTAGAAAGATTTGAATTATTATAGAAGGCTTTCCCACATTCATGATATTTACACATTCTTCATCCATTGCAGGATATTCTGATGTAAATTAAGACCTTCATTTTGAGTAAAGCTCTTCCCACCTTCAGCACACTGATA-------TATCCTATGTGAATTCTGTAATTATTACTGAGATGTGAGATTTCATTGAAGGCTTT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e saiBol1.JH378348            218880   0 -    375362 C
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      156457   5 -    285216 I
e cebCap1.NW_016108108v1      217958 1222 -    373274 I
e calJac3.chr4             171393496   0 - 171630274 C

a score=113574.000000
s hg38.chr6_GL000254v2_alt    154860 18 +   4827813 CCCAAATACTTTACTTTT
s panTro5.chr6              29136018 18 + 175400573 CCCAAATACTTTACTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29370420 18 + 173848474 CCCAAATACTTTACTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5170563 18 +   6154872 CCCAAATACTTTACTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74171685 18 + 122973662 CCCAAATACTTTACTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29347198 18 + 172585720 ccCAAATACTTTACTTTT
i rheMac8.chr4             I 327 C 0
s macFas5.chr4              29008253 18 - 170955103 ccCAAATACTTTACTTTT
i macFas5.chr4             I 316 C 0
s macNem1.NW_012011356v1     1984140 18 -   2996164 ccCAAATACTTTACTTTT
i macNem1.NW_012011356v1   I 326 C 0
s cerAty1.NW_012001495v1     1856566 18 -   2157725 ccCAAATACTTTACTTTT
i cerAty1.NW_012001495v1   I 319 C 0
s chlSab2.chr17             28306658 18 -  71996105 ccCAAATACTTTACTTTT
i chlSab2.chr17            I 322 C 0
s manLeu1.NW_012104165v1     1984891 18 +   2316924 ccCAAATACTTTACTTTT
i manLeu1.NW_012104165v1   I 326 C 0
s colAng1.NW_012115566v1     1865189 18 -   3067355 CCCAAATACTTAACTTTT
i colAng1.NW_012115566v1   C 0 I 6545
s dasNov3.JH561790             29571 18 -    302817 CCTGAACTCTATACATCC
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e saiBol1.JH378348            218880  0 -    375362 C
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      156457  5 -    285216 I
e cebCap1.NW_016108108v1      217958 1222 -    373274 I
e calJac3.chr4             171393496  0 - 171630274 C

a score=81862.000000
s hg38.chr6_GL000254v2_alt    154878 17 +   4827813 ATAAGACTTCTCTCTTG----
s panTro5.chr6              29136036 17 + 175400573 ATAAGGCTTCTCTCTTG----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29370438 17 + 173848474 ATAAGGCTTCTCTCTTG----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5170581 17 +   6154872 ATAAGGCTTCTCTCTTG----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74171703 17 + 122973662 ATAAGGTTTCTCTCTTG----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29347216 17 + 172585720 ATAAGGTTTCTCTCTTG----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29008271 17 - 170955103 ATAAGGTTTCTCTCTTG----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1984158 17 -   2996164 ATAAGGTTTCTCTCTTG----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1856584 17 -   2157725 ATAAGGTTTCTCTCTTG----
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28306676 17 -  71996105 ATAAGGTTTCTCTCTTG----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1984909 17 +   2316924 ATAAGGTTTCTCTCTTG----
i manLeu1.NW_012104165v1   C 0 C 0
s dasNov3.JH561790             29589 16 -    302817 ATAAGGTTT-----TTAAAAA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      940996 3320 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e saiBol1.JH378348            218880  0 -    375362 C
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      156457  5 -    285216 I
e cebCap1.NW_016108108v1      217958 1222 -    373274 I
e calJac3.chr4             171393496  0 - 171630274 C
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I

a score=835761.000000
s hg38.chr6_GL000254v2_alt    154895 133 +   4827813 TGTGCAGTCTCTCATACGATGTCAGGCCTCCATTGTGACTAAAGCTTTCTCCACATTCCTTAAAGTGATAAGGTTTCT------CTCAGTGTGTACTCTATGATGCTTAAGAAAGAGTGGGCTCTGATTAAAAGCTTTC
s panTro5.chr6              29136053 133 + 175400573 TGTGCAGTCTCTCATACGATGTCAGACCTCCATTGTGACTAAAGCTTTCTCCACATTCCTTAAAGTGATAAGGTTTCT------CTCAGTGTGTACTCTATGATGCTTAAGAAAGAGTGGGCTCTGATTAAAAGCTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29370455 133 + 173848474 TGTGCAGTCTCTCATACGATGTCAGACCTCCATTGTGACTAAAGCTTTCTCCACATTCCTTAAAGTGATAAGGTTTCT------CTCAGTGTGTACTCTATGATGCTTAAGAAAGAGTGGGCTCTGATTAAAAGCTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5170598 133 +   6154872 TGTGCAGTCTCTCATAAGATGACAGACCTCCATTGTGACTAAAGCTTTCTCCACATTCTTTAAAGTGATAAGGTTTCT------CTCAGTGTGTACTCTATGATGCTTAAGAAAGAGTGGGCTCTGATTAAAAGCTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74171720 133 + 122973662 TGTGCAGTCTCTCATATGATGTCAGACCTGCATTGTGACTAAAGCTTTCTCCACATTCCTTAAAGTGATAAGGTTTCT------CTCAGTGTGTACTCTATGATGCTTAAGAAAGAGTGGGCTCTGATTAAAAGCTTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29347233 133 + 172585720 TGTGCAGTCTCTCATATGATGTCAGACCTGCATTGTGACTAAAGCTTTCTCCACATTCCTTAACGTGATAAGGTTTCT------CTCCGTGTGTACTCTATGATGCTTAAGAAAGAGTGGGCTCTGATTAAAAGCTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29008288 133 - 170955103 TGTGCAGTCTCTCATATGATGTCAGACCTGCATTGTGACTAAAGCTTTCTCCACATTCCTTAACGTGATAAGGTTTCT------CTCCGTGTGTACTCTATGATGCTTAAGAAAGAGTGGGCTCTGATTAAAAGCTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1984175 133 -   2996164 TGTGCAGTCTCTCATATGATGTCAGACCTGCATTGTGACTAAAGCTTTCTCCACATTCCTTAACATGATAAGGTTTCT------CTCCGTGTGTACTCTATGATACTTAAGAAAGAGTGGGCTCTGATTAAAAGCTTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1856601 133 -   2157725 TGTGCAGTCTCTCATATGATGTCAGACCTGCATTGTGACTAAAGCTTTCTCCACGTTCCTTAAAGTGATAAGGTTTCT------CTCCGTGTGTCCTCTATGATGCTTAAGAAAGAGTGGGCTCTGATTAAAAGCTTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28306693 133 -  71996105 TGTGCAGTCTCTCATATGATGTCAGACCTGCATTGTGACTAAAGCTTTCTCCACATTCCTTAAGGTGATGAGGTTTCT------CTCCGTGTGTACTCTATGATGCTTAAGAAAGAGTGGGCTCTGATTAAAAGCTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1984926 133 +   2316924 TGTGCAGTCTCTCATATGATGTCAGACCTGCATTGTGACTAAAGCTTTCTCCACATTCCTTAAAGTGATAAGGTTTCT------CTCCGTGTGTACTCTATGATGCTTAAGAAAGAGTGGGCTCTGATTAAAAGCTTTC
i manLeu1.NW_012104165v1   C 0 C 0
s proCoq1.NW_012147953v1      944316 133 -   3516910 TGTGCATTCTCTTACATGATATCAGACCTGCATTCTGACCAAAGTTGTTTCCACCTTCTTTGCAGTGATAGGGTTTCT------CTCAGTGTGTACTCCACAATGCTCAAAAAGGAGGGAGCTCTGATTAAAAGCTTTC
i proCoq1.NW_012147953v1   I 3320 I 10
s dasNov3.JH561790             29605 139 -    302817 TGTGCCATCTCTGATGGGATATGAAACCTGCATTCTGACTTAAGCTTTTTCCTCATTCTTCACAGTGAAAGGGTTTCTCACCTCCCCCATGTATACTCTCTGATGCTTAATTAGGAGTGAACTCCAATTATAAGTTTTC
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25887311 329 +  26524999 I
e saiBol1.JH378348            218880   0 -    375362 C
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      156457   5 -    285216 I
e cebCap1.NW_016108108v1      217958 1222 -    373274 I
e calJac3.chr4             171393496   0 - 171630274 C
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I

a score=192130.000000
s hg38.chr6_GL000254v2_alt    155028 36 +   4827813 CCATGCATAAGATATTTGTAGGGTTTCTCTCCAGTA
s panTro5.chr6              29136186 36 + 175400573 CCATGCATAAGATATTTGTAGGGTTTCTCTCCAGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29370588 36 + 173848474 CCATGCATAAGATATTTGTAGGGTTTCTCTCCAGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5170731 36 +   6154872 CCATGCATAAGATATTTGTAGGGTTTCTCTCCAGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74171853 36 + 122973662 CCACGCATAAGATATTTGTAGGGTTTTTCTCCAGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29347366 36 + 172585720 CTACGAATAAGATATTTGTAGGGTTTTTCTCCAGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29008421 36 - 170955103 CTACGAATAAGATATTTGTAGGGTTTTTCTCCAGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1984308 36 -   2996164 CTACGAATAAGATATTTGTAGGGTTTTTCTCCAGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1856734 36 -   2157725 CTACGAATAAGATATTTGTAGGGTTTTTCTCCAGTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28306826 36 -  71996105 CTACGAATAAGATATTTGTAGGGTTTTTCTCCAGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1985059 36 +   2316924 CTACGAATAAGATATTTGTAGGGTTTTTCTCCAGTA
i manLeu1.NW_012104165v1   C 0 C 0
s dasNov3.JH561790             29744 36 -    302817 CCACACACATGACATTTGTAAGGTTTTTCTCCTGTA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      944449 10 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e saiBol1.JH378348            218880  0 -    375362 C
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      156457  5 -    285216 I
e cebCap1.NW_016108108v1      217958 1222 -    373274 I
e calJac3.chr4             171393496  0 - 171630274 C
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I

a score=960440.000000
s hg38.chr6_GL000254v2_alt    155064 156 +   4827813 TGTATTCTCTGATGTTTGAGATGGTCAGAATT----CTGAAGGTCTTATTGCATACATTACGCTTGTGGA-TTTCCCTCCAGTATGAAGCCTCTGATGTTTACTAAGATCTGAGCTCCAA--ATGAAAGTCTTGCCACACTGATCACATTCATAGTGTCTGTG
s panTro5.chr6              29136222 156 + 175400573 TGTATTCTCTGATGTTTGAGATGGTCAGAATT----CTGAAGGTCTTATTGCATACATTACGCTTGTGGA-TTTCCCTCCAGTATGAAGCCTCTGATGTTTACTAAGATCTGAGCTCCAA--ATGAAAGTCTTGCCACACTGATCACATTCATAGTGTCTGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29370624 156 + 173848474 TGTATTCTCTGATGTTTGAGATGGTCAGAATT----CTGAAGGTCTTATTGCATACATTACGCTTGTGGA-TTTCCCTCCAGTATGAAGCCTCTGATGTTTACTAAGATCTGAGCTCCAA--ATGAAAGTCTTGCCACACTGATCACATTCATAGTGTCTGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5170767 156 +   6154872 TGTATTCTCTGATGTTTGAGATGGTCAGAATT----CTGAAGGTCTTATTGCATATATTACACTTGTGGA-TTTCCCTCCAGTATGAAGCCTCTGATGTTTACTAAGATCTGAGCTCCAA--ATGAAAGTCTTGCCACACTGATCACATTCATAGGGTCTGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74171889 157 + 122973662 TGTATTCTCTGATGTTTGAGATGGCCAGAATT----CTGAAGGTCTTATTGCACACATTACGCTTGTGGATTTTCCCTCCAGTATGAAGCCTCTGATGTTTACTAAGATCTGAGCTCCAA--ATGAAAGTCTTGCCACACTGATCACATTCACAAGGTCTGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29347402 157 + 172585720 TGTATTCTCTGATGTTTGAGATGGTCAGAATT----CTGAAGGTCTTATTCCACTCATTATGCTTGTGGATTTTCCCTCCAGTATGAAGCCTCTGATGTTCACTAAGATCTGAGCTTCAA--ATGAAAGTCTTGCCACACTGATCACATTCGTAGGGTCTGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29008457 157 - 170955103 TGTATTCTCTGATGTTTGAGATGGTCAGAATT----CTGAAGGTCTTATTCCACTCATTATGCTTGTGGATTTTCCCTCTAGTATGAAGCCTCTGATGTTCACTAAGATCTGAGCTTCAA--ATGAAAGTCTTGCCACACTGATCACATTCGTAGGGTCTGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1984344 157 -   2996164 TGTATTCTCTGATGTTTGAGATGGTCAGAATT----CTGAAGGTCTTATTCCACTCATTATGCTTGTGGATTTTCCCTCCAGTATGAAGCCTCTGATGTTCACTAAGATCTGAGCTTCAA--ATGAAAGTCTTGCCACACTGATCACATTCGTAGGGTCTGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1856770 157 -   2157725 TGTATTCTCTGATGTTTGAGATGGTCAGAATT----CTGAAGGTCTTATTCCACTCATTATGCTTGTGGATTTTCCCTCCAGTATGAAGCCTCTGATGTTCACTAAGATCTGAGCTTCAA--ATGAAAGTCTTGCCACACTGATCACATTCGTAGGGTCTGTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28306862 157 -  71996105 TGTATTCTCTGATGTTTGAGATGGTCAGAATT----CTGAAAGTCTTATTCCACTCATTATGCTTGTGGATTTTCCCTCCAGTATGAAGCCTCTGATGTTCCCTAAGATCTGAGCTCCAA--ATGAAAGTCTTGCCACACTGATCACATTCGTAGGGTCTGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1985095 157 +   2316924 TGTATTCTCTGATGTTTGAGATGGTCAGAATT----CTGAAGGTCTTATTCCACTCATTATGCTTGTGGATTTTCCCTCCAGTATGAAGCCTCTGATGTTCACTAAGATCTGAGCTTCAA--ATGAAAGTCTTGCCACACTGATCACATTCGTAGGGTCTGTG
i manLeu1.NW_012104165v1   C 0 C 0
s proCoq1.NW_012147953v1      944459 162 -   3516910 TGTATTCTCTGGTGTTTGAGAAGGTCAGAACTTTGACTGAAGGTCTTATTGTATATATTATCTTCGGGGG-TTTCTCTCCAGTATGAAGCCTCTGATGCTTACTAAGATCAGAGCTCCAATTTTGAAAGTCTTACCACATTGATCACATTCATGGGGTCTGTG
i proCoq1.NW_012147953v1   I 10 I 37
s dasNov3.JH561790             29780 160 -    302817 CGTATTCTC-GGTGTTGGATAAGGTCAGATGTCTGACTGAAGGCCCTGTTGCACACATTGCTTTCATTGAGTTTTTCTCCAGTATGAATCCTCTGATGCTTACTAAGACCTGAACTCCAG--TTCAAGGTTTTTCCATATTGATCACATTCATAGCGTCTGTC
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25887311 329 +  26524999 I
e saiBol1.JH378348            218880   0 -    375362 C
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      156457   5 -    285216 I
e cebCap1.NW_016108108v1      217958 1222 -    373274 I
e calJac3.chr4             171393496   0 - 171630274 C
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I

a score=126420.000000
s hg38.chr6_GL000254v2_alt    155220 27 +   4827813 AAAA-TACAGCTTCTATAATGCAGGCTT----------
s panTro5.chr6              29136378 27 + 175400573 AAAA-TACAGCTTCTATAATGCAGGCTT----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29370780 27 + 173848474 AAAA-TACAGCTTCTATAATGCAGGCTT----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5170923 28 +   6154872 AAAAGTACAGCTTCTATAATGCAGGCTT----------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74172046 28 + 122973662 AAAAGTACAGCTTCTATAATGTAGGCTT----------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29347559 28 + 172585720 AAAAGTACAGCTTTTATAATGCAGGCTT----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29008614 28 - 170955103 AAAAGTACAGCTTTTATAATGCAGGCTT----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1984501 28 -   2996164 AAAAGTACAGCTTTTATAATGCAGGCTT----------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1856927 28 -   2157725 AAAAGTACAGCTTTTATAATGCAGGCTT----------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28307019 28 -  71996105 AAAAGTACAGCTTTTATAATGCAGGCTT----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1985252 28 +   2316924 AAAAGTACAGCTTTTATAATGCAGCCTT----------
i manLeu1.NW_012104165v1   C 0 C 0
s dasNov3.JH561790             29940 38 -    302817 AAAGGTATGTTCTCAATAATGCAGAATCAGACTGGACT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      944621 37 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e saiBol1.JH378348            218880  0 -    375362 C
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      156457  5 -    285216 I
e cebCap1.NW_016108108v1      217958 1222 -    373274 I
e calJac3.chr4             171393496  0 - 171630274 C
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I

a score=2452432.000000
s hg38.chr6_GL000254v2_alt    155247 406 +   4827813 TCACGGTGAAGGCCCTTCTATGCTCATCACA-CTTATAAGGGTTCTCCCCAGTGTGGATCTTC---TGGAGATAGAGGCTAGTGTTCCCACTGAAGG-CTTGCCACAAACTTTGTATTTACAGGGTCTCTCTTCAGTGTGGATCCTTTGCTGTTGAATAAGATTTGATTTCTTAGTGAAGAACTGTCTACATTCATCACTTTTACAACCCCTCTTTCCCATAAGTATTTTGTTCAGTACAGTTTTCATGACTTCTCTATGATCTCTTTTTCCTGGGGTGAAAATGTTCTCTGTC--TCACCAACAAAGGATTTTCTTAGTGCCTCTCATACCTGCCCTCAGGGTCACAAATGTTTTCAATTGCAGGATTTAAGGGATCATCACTTTTCCATCTTCCCAGGAACAGTGAGTGAG
s panTro5.chr6              29136405 406 + 175400573 TCACGGTGAAGGCCCTTCTATGCTCATCACA-CTTATAAGGGTTCTCCCCAGTGTGGATCTTC---TGGAGATAGAGGCTAGTGTTCCCACTGAAGG-CTTGCCACAAACTTTGTATTTACAGGGTCTCTCTTCAGTGTGGATCCTTTGCTGTTGAGTAAGATTTGATTTCTTAGTGAAGAACTGTCTACATTCATCACTTTTACAACCCCTCTTTCCCATAAGTATTTTGTTCAGTACAGTTTTCATGACTTCTCTATGATCTCTTTTTCCTGGGGTGAAAATGTTCTCTGTC--TCACCAACAAAGGATTTTCTTAGTGCCTCTCATACCTGCCCTCAGGGTCACAAATGTTTTCAATTGCAGGATTTAAGGGATCATCACTTTTCCATCTTCCCAGGAACAGTGAGTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29370807 406 + 173848474 TCACGGTGAAGGCCCTTCTATGCTCATCACA-CTTATAAGGGTTCTCCCCAGTGTGGATCTTC---TGGAGATAGAGGCTAGTGTTCCCACTGAAGG-CTTGCCACAAACTTTGTATTTACAGGGTCTCTCTTCAGTGTGGATCCTTTGCTGTTGAATAAGATTTGATTTCTTAGTGAAGAACTGTCTACATTCATCACTTTTACAACCCCTCTTTCCCATAAGTATTTTGTTCAGTACAGTTTTCATGACTTCTCTATGATCTCTTTTTCCTGGGGTGAAAATGTTCTCTGTC--TCACCAACAAAGGATTTTCTTAGTGCCTCTCATACCTGCCCTCAGGGTCACAAATGTTTTCAATTGCAGGATTTAAGGGATCATCACTTTTCCATCTTCCCAGGAACAGTGAGTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5170951 406 +   6154872 TCATGGTGAAGGCCCTTCTATGCTCATCACA-CTTATAAGGGTTCTCCCCAGTGTGGATCTTT---TGGAGATAGAGGCTAGTGTTCCCACTGAAGG-CTTGCCACAAACTTTGTATTTACAGGGTCTCTCTTCAGTGTGGATCCTTTGCTGTTGAATAAGATTTGATTTCTTAGTGAAGAACTGTCTACATTCATCACTTTTACAACCCCTCTTTCCCATAAGTATTTTGTTCAGTACAGTTTTCATGACTTCTCTATGATCTCTTTTTCGTGGGGTGAAAATGTTCTCTGTC--TCACCAACAAAGGATTTTCTTAGTGCCTCTCATACCTGCCCTCAGGGTCACAAATGTTTTCAATTGCAGGATTTAAGGGATCATCACTTTTCCATCTTCCCAGGAACAGTGAGTGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74172074 406 + 122973662 TCACGGTGAAGGCCCTTCTATGCTCATCACA-CTTATAAGGGTTCTCCCCAGTGTGGATCTTC---TGGAGATAGAGGCTGGTGTTCCCACTGAAGG-CTTGCCACAAACTTTATATTTACAGGGTCTCTCTCCAGTGTGGATCCTTTGCTGTGGAATAAGATTTGATTTCTTAGTGAAGAACTGTCTACATTCATCACATTTATAACCCCGCTTTCCCATAAGTATTTTGTTCAGTACAGTTTCCATGACTTCTCTATGATCTCTTTTTCCTGGGCTGAAAATGTTCTCTGTC--TCACCAACAAAGGATTTTCTTAGTGCCTCTCATACCTGCCCTCAGGGTCACAAATGTTTTCAATTGTAGGATTTAAGGGATCATCACTTTTCCATCTGCCCAGGAACAGTGAGTGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29347587 406 + 172585720 TCACAGTGAAGTCCCTTCTATGCTCATCACA-CTTACAAAGGTTCTCCCCAGTGTGGATCTTC---TGGAGATAGAGGCTGGTGTTCCCACTGAAGG-CTTGCCACCAACTTTGTTTTTACAGGGTCTTTCTCCAGTGTGGATCCTTTGCTGTTGAATAAGATTTGATTTCTTAGTGAAGAACTTTTTACATTCATCACATTTATAACCCCTCTTTCCCATAAGTATTTTGTTCAGTACAGTTTTCATGACTTCTCTATGATCTCTTTTTCCTGGAGTGAAAATGTTCTCTGTC--TCACCAACAAAGAATTTTCTTAGTGCCTCTCATACCTGCCCTCAGGGTCACAAATGTTTTCAATTGTAGAATTTAAGGGATCATCACTTTTCCATCTTCCCAGGAACAGTGAGTGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29008642 406 - 170955103 TCACAGTGAAGTCCCTTCTATGCTCATCACA-CTTACAAGGGTTCTCCCCAGTGTGGATCTTC---TGGAGATAGAGGCTGGTGTTCCCACTGAAGG-CTTGCCACCAACTTTGTATTTACAGGGTCTTTCTCCAGTGTGGATCCTTTGCTGTTGAATAAGATTTGATTTCTTAGTGAAGAACTTTTTACATTCATCACATTTATAACCCCTCTTTCCCATAAGTATTTTGTTCAGTACAGTTTTCATGACTTCTCTATGATCTCTTTTTCCTGGAGTGAAAATGTTCTCTGTC--TCACCAACAAAGAATTTTCTTAGTGCCTCTCATACCTGCCCTCAGGGTCACAAATGTTTTCAATTGTAGAATTTAAGGGATCATCACTTTTCCATCTTCCCAGGAACAGTGAGTGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1984529 406 -   2996164 TCACAGTGAAGTCCCTTCTATGCTCATCACA-CTTACAAGGGTTCTCCCCAGTGTGGATCTTC---TGGAGATAGAGGCTGGTGTTCCCACTGAAGG-CTTGCCACCAACTTTGTATTTACAGGGTCTTTCTCCAGTGTGGATCCTTTGCTGTTGAATAAGATTTGATTTCTTAGTGAAGAACTTTTTACATTCATCACATTTATAACCCCTCTTTCCCATAAGTATTTTGTTCAGTACAGTTTTCATGACTTCTCTATGATCTCTTTTTCCTGGAGTGAAAATGTTCTCTGTC--TCACCAACAAAGAATTTTCTTAGTGCCTCTCATACCTGCCCTCAGGGTCACAAATGTTTTCAATTGTAGAATTTAAGGGATCATCACTTTTCCATCTTCCCAGGAACAGTGAGTGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1856955 406 -   2157725 TCACAGTGAAGTCCCTTCTATGCTCATCACA-CTTACAAGGGTTCTCCCCAGTGTGGATCTTC---TGGAGATAGAGGCTGGTGTTCCCACTGAAGG-CTTGCCACAAACTTTGTATTTACAGGGTCTTTCTCCAGTGTGGATCCTTTGCTGTTGAATAAGATTTGATTTCTTAGTGAAGAACTTTTTACATTCATCACATTTATAACCCCTCTTTCCCATAAGTATTTTGTTCAGTACAGTTTTCATGACTTCTCTATGATCTCTTTTTCCTGGAGTGAAAATGTTCTCTGTC--TCACCAACAAAGAATTTTCGTAGTGCCTCTCATACCTGCCCTTAGGGTCACAAATGTTTTCAATTGTAGAATTTAAGGGATCATCACTTTTCCATCTTCCCAGGAACAGTGAGTGAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28307047 406 -  71996105 TCACAGTGAAGTCCCTTCTATGCTCATCACA-CTTACAAGGGTTCTCCCCAGTGTGGATCTTC---TGGAGATAGAGGCTGGTGTTCCCACTGAAGG-CTTGCCACAAACTTTGTATTTATAGGGTCTCTCTCCAGTGTGAATCCTTTGCTGTTGAATAAGATTTGATTTCTTAGTGAAGAACTTTTTACATTCATCACATTTATAACCCCTCTTTCCCATAAGTATTTTGTTCAGTACAGTTTTCATGACTTCTCTATGATCTCTTTTTCCTGGAGTGAAAATGTTCTCTGTC--TCACCAACAAAGGATTTTCTTAGTGCCTCTCATACTTGCCCTCAGGGTCACAAATGTTTTCAATTGTAGAATTTAAGGGATCATCACTTTTCCATCTTCCCAGGAACAGTGAGTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1985280 406 +   2316924 TCACAGTGAAGTCCCTTCTATGCTCATCACA-CTTACAAGGGTTCTCCCCAGTGTGGATCTTC---TGGAGATAGAGGCTGGTGTTCCCACTGAAGG-CTTGCCACAAACTTTGTATTTACAGGGTCTTTCTCCAGTGTGGATCCCTTGCTGTGGAATAAGATTTGATTTCTTAGTGAAGAACTTTTTACATTCATCACATTTATAACCCCTCTTTCCCATAAGTATTTTGTTCAGTACAGTTTTCATGACTTCTCTATGATCTCTTTTTCCTGGAGTGAAAATGTTCTCTGTC--TCACCAACAAAGAATTTTCTTAGTGCCTCTCATACCTGCCCTCAGGGTCACAAATGTTTTCAATTGTAGAATTTAAAGGATCATCACTTTTCCATCTTCCTAGGAACAGTGAGTGAG
i manLeu1.NW_012104165v1   C 0 C 0
s proCoq1.NW_012147953v1      944658 405 -   3516910 TCACAATGAAGGCTGTCCTACACTCACAACA-TTTACAAGGGTTCTCCCCAGTGTGGATCCTCTGATGGAGACAGAGGTTGGTGCTCTCACTGAAGGTTTTACCACAAACTTTACATTTATATGGGCTCTCTCTGGTGTGAATTCTTTGCTATTCAATAAGGTTTAATTTCTTAGTGAAGAACTTTTCATATTTGTCACATTTCTAACTTCTTTTTCCCATAAGTATTCC-TTTGGTATAACTTTCATCACTTCTCTACGA--TCTTTTTCCTGGGGTTAAAATTTTCTCTGTC--TCACCAATAAATGATTTTCTTAGTGCCTTTCATATCTGCCCTCAGAGTCAC-AGTGTGTTCAA-TGTAAGCTTCTGGGGCTCATGAGCTTTCCATCTTCCCAGGAATAGTGAGTGAG
i proCoq1.NW_012147953v1   I 37 C 0
s dasNov3.JH561790             29978 327 -    302817 TCACGATGAAGGCTTTCTCACACTTCTCACATTTTATAAGGTTTCTCCCCAGAGCGGATCCTC------------------------------------------------------------------------------------TGATGTCGAATGAGATTTGATTTCTTAGTAAAGAACATCCCACATTCATCACATTTATAATCTCTCTCTCCCCTATGCATTTTCTTTGATACAAATTTTGTGACTTCTCTGTGATCTC--TTTCCTTGGGTGAAGCTTTTCTCTCTCTTTCACCATATGAAGGTTTTCTTGATACCTTTTATTCCTGCTTTCAAGGTCACAAGCATGTTCAACTATAGGCTTCTGGGGATCATCACCTTTTAATCTTCCCAGTAACAGTGAGTGAG
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25887311 329 +  26524999 I
e saiBol1.JH378348            218880   0 -    375362 C
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      156457   5 -    285216 I
e cebCap1.NW_016108108v1      217958 1222 -    373274 I
e calJac3.chr4             171393496   0 - 171630274 C
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I

a score=19110.000000
s hg38.chr6_GL000254v2_alt    155653 2 +   4827813 AT
s panTro5.chr6              29136811 2 + 175400573 AT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29371213 2 + 173848474 AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5171357 2 +   6154872 AT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74172480 2 + 122973662 AT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29347993 2 + 172585720 AT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29009048 2 - 170955103 AT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1984935 2 -   2996164 AT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1857361 2 -   2157725 AT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28307453 2 -  71996105 AT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1985686 2 +   2316924 AT
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171393496 2 - 171630274 AT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            218880 2 -    375362 AT
i saiBol1.JH378348         C 0 C 0
s proCoq1.NW_012147953v1      945063 2 -   3516910 AT
i proCoq1.NW_012147953v1   C 0 C 0
s dasNov3.JH561790             30305 2 -    302817 AT
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25887311 329 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      156457 5 -    285216 I
e cebCap1.NW_016108108v1      217958 1222 -    373274 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I

a score=96982.000000
s hg38.chr6_GL000254v2_alt    155655 10 +   4827813 GCTACTTCTT
s panTro5.chr6              29136813 10 + 175400573 GCTACTTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29371215 10 + 173848474 GCTACTTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5171359 10 +   6154872 GCTACTTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74172482 10 + 122973662 GCTACTTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29347995 10 + 172585720 GTTACTTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29009050 10 - 170955103 GTTACTTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1984937 10 -   2996164 GTTACTTCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1857363 10 -   2157725 GTTACTTCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28307455 10 -  71996105 GTTGCTTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1985688 10 +   2316924 GTTACTTCTT
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171393498 10 - 171630274 GCTACTTTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            218882 10 -    375362 GCTGCTTTTT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      156462 10 -    285216 GCTACTTTTT
i aotNan1.NW_018494050v1   I 5 C 0
s proCoq1.NW_012147953v1      945065 10 -   3516910 GCTACTTCTT
i proCoq1.NW_012147953v1   C 0 I 76
s dasNov3.JH561790             30307 10 -    302817 GCTACTTCTT
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25887311 329 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e cebCap1.NW_016108108v1      217958 1222 -    373274 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I

a score=428975.000000
s hg38.chr6_GL000254v2_alt    155665 52 +   4827813 CAGTACTTTTTGGAACCCTGAAGTCATGCTTAGCTTTCTAAACCTATACTCA
s panTro5.chr6              29136823 52 + 175400573 CAGTACTTTTTGGAACCCTGAAGTCATGCTTACCTTTCTAAACCTATACTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29371225 52 + 173848474 CAGTACTTTTTGGAACCCTGAAGTCATGCTTACCTTTCTAAACCTATACTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5171369 52 +   6154872 CAGTACTTTTTGGAACCCTGAAGTCATGCTTACATTTCTAAACCTATACTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74172492 52 + 122973662 CGGTACTTTTTGGACCCCTAAAATCATGCTTACATTTCTAAACCTATACTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29348005 51 + 172585720 CAGTACTTTTTGGAA-TCTGAAGTCATGCTTACATTTCCAAACCTATACTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29009060 52 - 170955103 CAGTACTTTTTGGAACTCTGAAGTCATGCTTACATTTCCAAACCTATACTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1984947 52 -   2996164 CAGTACTTTTTGGAACTCTGAAGTCATGCTTACATTTCCAAACCTATACTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1857373 52 -   2157725 CAGTACTTTTTGGAACTCTGAAGTCATGCTTACATTTCCAAACCTATACTCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28307465 52 -  71996105 CAGTACTTTTTGGAACTCTGAAGTCATGCTTACATTTCCAAACCTATACTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1985698 52 +   2316924 CAGTACTTTTTGGGACTCTGAAGTCATGCTTACATTTCCAAACCTATACTCA
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171393508 52 - 171630274 CAGTACCTTTTGGAACTCTGAAGTCATGCTTACATTTCTAAACCCATACTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            218892 52 -    375362 CAGTACTTTTTGGAACTCTGAAGTCATGCTTACATTTCCAAACCCATACTCA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      156472 52 -    285216 CAGTACGTTTTGGAACTCTGAAGTCATGCTTACATTTCCAAACCCATACTCA
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             30317 50 -    302817 CAGAGCTTTTTTT--CTCTAAAGCCACTTTCACATTTCTAAACCTACACACA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      945075 76 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e cebCap1.NW_016108108v1      217958 1222 -    373274 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I

a score=798545.000000
s hg38.chr6_GL000254v2_alt    155717 114 +   4827813 GTccaggcatggtggctcatacctgtaatcccagcattttgggaggctgaggtaggaggatcacttgaacccaggag-----tttgagaccaagctaggcaacatcatgagaccccatc
s panTro5.chr6              29136875 114 + 175400573 GTccaggcatggtggctcatacctgtaatcccagcattttgggaggctgaggtaggaggatcacttgaacccaggag-----tttgagaccaagctaggcaacatcatgagaccccatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29371277 114 + 173848474 GTccaggcatggtggctcatacctgtaatcccagcattttgggaggctgaggtaggaggatcacttgaacccaggag-----tttgagaccaagctaggcaacatcatgagaccccatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5171421 114 +   6154872 GTccaggcatggtggctcatacctgtaatcccagcattttgggaggctgaggtaggaggatcacttgaacccaggag-----tttgagaccaagctaggcaacatcatgagaccccatc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74172544 114 + 122973662 ggccaggcatggtggctcatacctgtaatcccagcattttgggaggctgaggtaggaggatcacttgagcccaggag-----tttgagaccaagctaggcaacatcatgagaccccacc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29348056 119 + 172585720 ggccaggcatggtggctcatacctgcaatcccagcattttgggaggctgagatgagagtatcacttgagcccaggaggatcacttgagaccaagctaggcaacatcttgagaccccatc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29009112 119 - 170955103 ggccaggcatggtggctcatacctgcaatcccagcattttgggaggctgagatgagagtatcacttgagcccaggaggatcacttgagaccaagctaggcaacatcttgagaccccatc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1984999 119 -   2996164 ggccaggcatggtggctcatacctgcaatcccagcattttgggaggctgagatgagagtatcacttgaacccaggaggatcacttgagaccaagctaggcaacatcttgagaccccatc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1857425 119 -   2157725 ggccaggcatggtggctcatacctgcaatcccagcattttgggaggctgagatgagagtatcacttgagcccaggaggatcacttgagaccaagctaggcaacatcttgagaccccatc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28307517 119 -  71996105 ggccaggcatgatggctcatacctgcaatcccagcattttgggaggctgagatgagagtatcacttgagcccaggaggatcacttgagaccaagccaggcaacatcttgagaccccatc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1985750 119 +   2316924 ggccaggcatggtggctcatacctgcaatcccagcattttgggaggctgagatgagagtatcacttgagcccaggaggatcacttgagaccaagctaggcaacatcttgagaccccatc
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171393560 101 - 171630274 ggccaggaatggtggctcatacctgtaatcccagcattttgggagg-------------atgacgtgagcccaggag-----tttgagaccaagctagacaacatcaggaaaccccatt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            218944 101 -    375362 ggccaggaatagtggctcacacctgtaatcccagcattttgggagg-------------gttactcgagcccaggag-----tttgagaccaagctaggcaacatcatgaaaccccatt
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      156524 101 -    285216 ggccaggaatggtggctcatacctgtaatcgcagcattttgggagc-------------attatctgagcccaggag-----tttgagatcaagctaggcaacatcatgagatcccatt
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             30367   0 -    302817 C
e proCoq1.NW_012147953v1      945075  76 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e cebCap1.NW_016108108v1      217958 1222 -    373274 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I

a score=29610.000000
s hg38.chr6_GL000254v2_alt    155831 3 +   4827813 tct
s panTro5.chr6              29136989 3 + 175400573 tct
i panTro5.chr6             C 0 I 1
s panPan2.chr6              29371391 3 + 173848474 tct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5171535 3 +   6154872 tct
i gorGor5.CYUI01015250v1   C 0 I 2
s nomLeu3.chr1a             74172658 3 + 122973662 tct
i nomLeu3.chr1a            C 0 I 2
s rheMac8.chr4              29348175 3 + 172585720 tct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29009231 3 - 170955103 tct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1985118 3 -   2996164 tct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1857544 3 -   2157725 tct
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28307636 3 -  71996105 tct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1985869 3 +   2316924 tct
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171393661 3 - 171630274 tct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            219045 3 -    375362 tct
i saiBol1.JH378348         C 0 I 1472
s aotNan1.NW_018494050v1      156625 3 -    285216 tct
i aotNan1.NW_018494050v1   C 0 I 1
s dasNov3.JH561790             30367 3 -    302817 TCT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      945075 76 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e cebCap1.NW_016108108v1      217958 1222 -    373274 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I

a score=5172.000000
s hg38.chr6_GL000254v2_alt    155834 14 +   4827813 --aaaaaaaaaaaaaa
s panTro5.chr6              29136993 14 + 175400573 --aaaaaaaaaaaaaa
i panTro5.chr6             I 1 C 0
s panPan2.chr6              29371394  6 + 173848474 ----------aaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5171540 14 +   6154872 --aaaaaaaaacaaaa
i gorGor5.CYUI01015250v1   I 2 C 0
s nomLeu3.chr1a             74172663 14 + 122973662 --aaaaaaaaaaaaaa
i nomLeu3.chr1a            I 2 C 0
s rheMac8.chr4              29348178  8 + 172585720 ---a-----taaaaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29009234  8 - 170955103 ---a-----taaaaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1985121 13 -   2996164 ---ataaagtaaaaat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1857547 13 -   2157725 ---ataaagtaaaaat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28307639 13 -  71996105 ---ataaagtaaaaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1985872 13 +   2316924 ---ataaagtaaaaat
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171393664 12 - 171630274 ----taaaaaaaaata
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1      156629 14 -    285216 --aaaaaagaaaaata
i aotNan1.NW_018494050v1   I 1 C 0
s dasNov3.JH561790             30370 14 -    302817 GAAACAAAAGAAAA--
i dasNov3.JH561790         C 0 I 27
e proCoq1.NW_012147953v1      945075 76 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e cebCap1.NW_016108108v1      217958 1222 -    373274 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I

a score=50950.000000
s hg38.chr6_GL000254v2_alt    155848 16 +   4827813 aaaaaaaaa-----agctgct
s panTro5.chr6              29137007 16 + 175400573 aaaaaaaaa-----agctgct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29371400 16 + 173848474 aaaaaaaaa-----gactgct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5171554 16 +   6154872 caaaaaaac-----agctgct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74172677 21 + 122973662 aaaaaaaaaaaattagctggt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29348186 16 + 172585720 aaaaaaatt-----agctggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29009242 16 - 170955103 aaaaaaatt-----agctggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1985134 16 -   2996164 aaaaaaatt-----agctggg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1857560 16 -   2157725 aaaaaaatt-----agctggg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28307652 16 -  71996105 aaaaaaatt-----agctggg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1985885 16 +   2316924 aaaaaaatt-----agctggg
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171393676 13 - 171630274 caaaaaatt-----agcc---
i calJac3.chr4             C 0 I 3
s aotNan1.NW_018494050v1      156643 13 -    285216 caaaaaatt-----agcc---
i aotNan1.NW_018494050v1   C 0 I 3
e dasNov3.JH561790             30384 27 -    302817 I
e proCoq1.NW_012147953v1      945075 76 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e cebCap1.NW_016108108v1      217958 1222 -    373274 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I

a score=1170684.000000
s hg38.chr6_GL000254v2_alt    155864 159 +   4827813 catggtggtgtgtacctg----tagtcccagctactcaggaggctgagatgggaggattgcttgaa-ccaagaggtcaaggctgcagtgattgtgctattgcactccagcctgtgcaacagagcaagactctgtctcaaaaataataaataaaCCTACACTCAC
s panTro5.chr6              29137023 159 + 175400573 catggtggtgtgtacctg----tagtcccagctactcaggaggctgagatgagaggattgcttgaa-ccaagaggtcaaggctgcagtgattgtgctattgcactccagcctgtgcaacagagcaagactctgtctcaaaaataataaataaaCCTACACTCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29371416 159 + 173848474 catggtggtgtgtacctg----tagtcccagctactcaggaggctgagatgagaggattgcttgaa-ccaagaggtcaaggctgcagtgattgtgctattgcactccagcctgtgcaacagagcaagactctgtctcaaaaataataaataaaCCTACACTCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5171570 159 +   6154872 catggtggtgtgtacctg----tactcccagctactcaggaggctgagatgggaggattgcttgaa-ccaagaggtcaaggctgcagtgattgtgctattgcactccagcctgtgcaacagagcaagactttgtctcaaaaataataaataaaCCTACACTCAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74172698 159 + 122973662 catggtggtgtgtacctg----tagtcccagctactcaggaggctgagatgggaggattgcttgaa-ccaagaggtcaaggctgcagtgattgtgctattgcactccagcctgtgcaacagagcaagactctgtctcaaaaataataaataaaCCTACACTCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29348202 158 + 172585720 catgatggtgtgtgtctg----tagtcccagctactcaggaggctgagatgggaggattgcttgaacccaagaggtcaaggctgcagtgattgtgctattgcactccagcttgtgcaacagagcaagac--tgtctcaaaaataataaataaaCCTACACTCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29009258 158 - 170955103 catgatggtgtgtgtctg----tagtcccagctactcaggaggctgagatgggaggattgcttgaacccaagaggtcaaggctgcagtgattgtgctattgcactccagcctgtgcaacagagcaagac--tgtctcaaaaataataaataaaCCTACACTCAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1985150 158 -   2996164 catggtggtgtgtgtctg----tagtcccagctactcaggaggctgagatgggaggattgcttgaacccaagaggtcaaggctgcagtgattgtgctattgcactccagcctgtgcaacagagcaagac--tgtctcaaaaataataaataaaCCTACACTCAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1857576 158 -   2157725 catggtggtgtgtgtctg----tagtcccagctactcaggaggctgagatgggaggattgcttgaacccaagaggtcaaggctgcagtgattgtgctattgcactccagcctgtgcaacagagcaagac--tgtctcaaaaataataaataaaCCTACACTCAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28307668 158 -  71996105 catggtggtgtgtgtctg----tagtcccagctactcaggaggctgagatgggaggattgcttgaacccaagaggtcaaggctgcagtgattgtgctattgcactccagcctgtgcaacagagcaagac--tgtctcaaaaataataaataaaCCTACACTCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1985901 158 +   2316924 catggtggtgtgtgtctg----tagtcccagctactcaggaggctgagatgggaggattgcttgaacccaagaggtcaaggctgcagtgattgtgctattgcactccagcctgtgcaacagagcaagac--tgtctcaaaaataataaataaaCCTACACTCAC
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171393692 163 - 171630274 catggtggtgtgtgactgtaattaatcataacccctcgggaggctgagatgggaggattgcttgagcccgagatgttaactctgcagtgacggtgccattgcactccagcctgggtaacagagcaagactctg-ctcaGCAATAATAAATAAACCTACACTCAG
i calJac3.chr4             I 3 C 0
s cebCap1.NW_016108108v1      219180 158 -    373274 catggtggtgtctgactg----tagtcataactactcagaaggctgagatgggaggattgcttgagcccaagacgttaaggctgcagtgactgtgcaactgcactccagcctgggtaacagagcaagactgt--ctcaaaaataataaataaaCCTACACTCAG
i cebCap1.NW_016108108v1   I 1222 C 0
s aotNan1.NW_018494050v1      156659 157 -    285216 ---catggtgtgtgactg----tagtcatagctactcaggaggctgaggtgggaggactgcttgagcccaagactttaaggctgcagtgactgtgctactgcactccagcctgggtaacagagcaagattccgtctcacaaataataaataaaCCTACACTCAG
i aotNan1.NW_018494050v1   I 3 C 0
e dasNov3.JH561790             30384  27 -    302817 I
e proCoq1.NW_012147953v1      945075  76 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I

a score=6876.000000
s hg38.chr6_GL000254v2_alt    156023 2 +   4827813 CT
s panTro5.chr6              29137182 2 + 175400573 CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29371575 2 + 173848474 CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5171729 2 +   6154872 CT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74172857 2 + 122973662 CT
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012011356v1     1985308 2 -   2996164 CT
i macNem1.NW_012011356v1   C 0 I 206
s calJac3.chr4             171393855 2 - 171630274 CT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      219338 2 -    373274 CT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      156816 2 -    285216 CT
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             30384 27 -    302817 I
e proCoq1.NW_012147953v1      945075 76 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I
e manLeu1.NW_012104165v1     1986059 0 +   2316924 C
e chlSab2.chr17             28307826 0 -  71996105 C
e cerAty1.NW_012001495v1     1857734 0 -   2157725 C
e macFas5.chr4              29009416 0 - 170955103 C
e rheMac8.chr4              29348360 0 + 172585720 C

a score=66184.000000
s hg38.chr6_GL000254v2_alt    156025 28 +   4827813 TCTGAAATAAAACAACAAAAAATTATTT
s panTro5.chr6              29137184 28 + 175400573 TCTGAAATAAAACAACAAAAAATTATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29371577 28 + 173848474 TCTGAAATAAAACAACAAAAAATTATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5171731 28 +   6154872 TCTGAAATAAAACAACAAAAAATTATTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74172859 28 + 122973662 TCTGAAATAAAACAACAAAAAATTATTT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171393857 28 - 171630274 TCTGAAACAAAACAACAAAAAATCATTC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      219340 28 -    373274 TCTGAAACAAAACAACAAAAAATTATTC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      156818 28 -    285216 TCCGAAACGAAACAACAAAAAATTATTC
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             30384 27 -    302817 I
e proCoq1.NW_012147953v1      945075 76 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I
e manLeu1.NW_012104165v1     1986059  0 +   2316924 C
e chlSab2.chr17             28307826  0 -  71996105 C
e cerAty1.NW_012001495v1     1857734  0 -   2157725 C
e macNem1.NW_012011356v1     1985310 206 -   2996164 I
e macFas5.chr4              29009416  0 - 170955103 C
e rheMac8.chr4              29348360  0 + 172585720 C

a score=16155.000000
s hg38.chr6_GL000254v2_alt    156053 13 +   4827813 AAATTTCACTG---------------------CT
s panTro5.chr6              29137212 13 + 175400573 AAATTTCACTG---------------------CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29371605 13 + 173848474 AAATTTCACTG---------------------CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5171759 13 +   6154872 AAATTTCACTG---------------------CT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74172887 13 + 122973662 AAATTTCACTG---------------------CT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171393885 34 - 171630274 AAATTTCACTGCTGAAGGAGAAACATAATTATCT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      219368 34 -    373274 AGATTTCACTGCTGAAGGAGAAACATAATTATCT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      156846 34 -    285216 AAATTTCACTGCTGAAGGAGCAACATAATTATCT
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             30411 13 -    302817 --------------------AAACATGATTATC-
i dasNov3.JH561790         I 27 C 0
e proCoq1.NW_012147953v1      945075 76 -   3516910 I
e canFam3.chr35             25887311 329 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I
e manLeu1.NW_012104165v1     1986059  0 +   2316924 C
e chlSab2.chr17             28307826  0 -  71996105 C
e cerAty1.NW_012001495v1     1857734  0 -   2157725 C
e macNem1.NW_012011356v1     1985310 206 -   2996164 I
e macFas5.chr4              29009416  0 - 170955103 C
e rheMac8.chr4              29348360  0 + 172585720 C

a score=993775.000000
s hg38.chr6_GL000254v2_alt    156066 323 +   4827813 AAATAAGAGCAGTAAGTTCTATTTCCCTTTCCTTCAACAGATTTGCAAATTTAGCTGTAAATGAAGGATTTGAACACACACAAA-TTCACActaaactc--tagtttcagtgtttcctatcttgttggctatatgaccttaggcaagtcacataa---ctttgtgcatctgtatctttgcctacaaaacatggaca---acagttgcaacctcaaagggttatgaaagcacacaaaactgtgtctgacacactgtaagcattat---------taagtgtgag-------ttgctattGTTACCATTG---TTGTCACATCTCAGTATCCCAACA-TGTTGCTTATCTTAAA
s panTro5.chr6              29137225 323 + 175400573 AAATAAGAGCAGTAAGTTCTATTTCCCTTTCCTTCAACAGATTTGCAAATTTAGCTGTAAATGAAGGATTTGAACACACACAAA-TTCACActaaactc--tagtttcagtgtttcctatcttgttggctatatgaccttaggcaagtcacataa---ctttgtgcatctgtatctttgcctacaaaacatggaca---acaattgcaacctcaaagggttatgaaagcacacaaaactgtgtctgacacactgtaagcattat---------taagtgtgag-------ttgctattGTTACCATTG---TTGTCACATCTCAGTATCCCAACA-TGTTGCTTATCTTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29371618 323 + 173848474 AAATAAGAGCAGTAAGTTCTATTTCCCTTTCCTTCAACAGATTTGCAAATTTAGCTGTAAATGAAGGATTTGAACACACACAAA-TTCACActaaactc--tagtttcagtgtttcctatcttgttggctatatgaccttaggcaagtcacataa---ctttgtgcatctgtatctttgcctacaaaacatggaca---acaattgcaacctcaaagggttatgaaagcacacaaaactgtgtctgacacactgtaagcattat---------taagtgtgag-------ttgctattGTTACCATTG---TTGTCACATCTCAGTATCCCAACA-TGTTGCTTATCTTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5171772 323 +   6154872 AAATAAGAGCAGTAAGTTCTATTTCCCTTTCCTTCAACAGATTTGCAAATCTAGCTGTAAATGAAGGATTTGAACACACACAAA-TTCACActaaactc--tagtttcagtgtttcctatcttgttggctatatgaccttaggcaagtcacataa---ctttgtgcatctgtatctttgcctacaaaacatggaca---acagttgcaacttcaaagggttatgaaagcacacaaaactgtgtctgacacactgtaagcattat---------taagggtgag-------ttgctgttGTTACCATTG---TTGTCACATCTCAGTATCCCAACA-TGTTGCTTATCTTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74172900 321 + 122973662 AAATAAGAGCAGTAAGTTCTATTTC-----CCTTCAACAGATTTGTAAATTTAGCTGTAAATGAAGGATTTGAATACACACAAA-TTCACActaaactc--tagtttcagtgtttcctatcttgttggctatatgaccttaggcaagtcacataa---ctttgtgcatctgtgtctttgcctacaaaacatggaca---acacttgcaacctcaaagggttatgaaagcacacaaaactgtgcctgacacactgtaagcattat---------taagtgttag-------ttgctattGTTACCATTGTTATTGTCATATCTCAGTATCCCAACA-TGTTACTTATCTTAAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171393919 309 - 171630274 AAATAAGAGCAGTAAGTTCTATTTCCCTTTCCTTCAACAGATTTGTAAATTT------------AGGACCTGAACACATACAAATTTCACActaaactc--tagtttcagttcttcctatcttattggctgtgtgaccttaggcaagtcacataa---ctttgtgcttttctagctttgcttacaaaacatggaca---acagttgcaacctcaaagggttatgaaagcacacaaaactgtgcctgacacactgtgagtattat---------ttagtgttag-------ctgctattGTTACCA------TTCTCACATGTCAGTTTCCCAACT-TGTTGCTTATCTTAAA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      219402 320 -    373274 AAATAAGAGCAGTAAGTTCTATTTCCCTTTCCTTCAACAGATTTGTAAATTTAGCTGTAAATGAAGGATTTGAACACATACAAA-TTCACActaaactc--tagtttcagttcttcctatcttgttggctgtgtgatcttaggcaagtcacataa---ctttgtgcttttgtatctttacctacaaaacatggaca---acagttgcaacctcaaagtgttatgaaagcacacaaaactgtgcctgacagactgtgtacattat---------ttagtgttaG-------CTGCTATTGTTACCA------TTCTCACATGTCAGTATCCCAACA-TGTTGCTTATCTTAAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      156880 322 -    285216 AAATAAGAGCAGTAAGTTCTATTTCCCTTTCCTTCAACAGATTTGTAAATTTAGCTGTAAATGAAAGATTTGAACACATACAAA-TTCACActaaactctatagtttcagttcttcctatcttgttggctgtgtgaccttaggcaagtcacataa---ctttgtgcttttgtgtctttgcctacaaaacatggaca---acagttgcaagctcaaagggttatgaaagcacacaaaactgtgcctgacacactgcaagcattat---------ttagtgttag-------ctgctattGTTACCA------TTCTCACATGTCAGTAGCCCAACA-TGTTGCTTATCTTAAA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      945151 325 -   3516910 AAATAAGAACAATAAGTTCTGTTTTCCTTTCCTTCAACAGATTCATAAAATCAGCTGTAGATGAAGGATATGAACACCTACAAA-TCCACACTAACTTG--Taatttcagttctttctcttttattggctgtgtgaccttagataaattatataacttctttgtgcttgtgtttctttgtctacaaaatgtgtacaactacagttcctatctcacagggttatagaagcacacaaaactgtgcctgacgcactataagcattacg--------taagcattag-------ctgctattGATATCATTACAATTGTTATATTT--------CAACA-TTTTGCTTATCTTATG
i proCoq1.NW_012147953v1   I 76 C 0
s dasNov3.JH561790             30424 329 -    302817 AAATGAGAGTAATAAA--CTATTTT------ATTCTATAGATTTGTAAGACCATCTGTAAATGAAGGATGAGAAATCATACAAA-TTCACACTAAATTC--TTATTTCCTTTCTTTCTGTcttattagctctgtaaccttgggcaagtcatataatttctctgtacttctgtttcttcatctacaaaatgtgggca---agagttcatgcttcatcagattTT--AAGCACATAAAACTGTGCCTGACATACTGT----ATTATGTAATAGTTTTAAAGCCAGAGACATTCTGCTACTGTTATCATTG---TTGTTATATCTTAGTATCCCAGCACTATTGCTTATCTTACA
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25887311 329 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I
e manLeu1.NW_012104165v1     1986059   0 +   2316924 C
e chlSab2.chr17             28307826   0 -  71996105 C
e cerAty1.NW_012001495v1     1857734   0 -   2157725 C
e macNem1.NW_012011356v1     1985310 206 -   2996164 I
e macFas5.chr4              29009416   0 - 170955103 C
e rheMac8.chr4              29348360   0 + 172585720 C

a score=234506.000000
s hg38.chr6_GL000254v2_alt    156389 69 +   4827813 TTGAAAAGGA-TTAAGAAATGTTACTTG----CTATTTCTACAAATTCTTTCTTGGTTATTAAAATGTCATGTA-
s panTro5.chr6              29137548 69 + 175400573 TTGAAAAGGA-TTAAGAAATGTTACTTG----CTATTTCTACAAATTCTTTCTTGGTTATTAAAATGTCATGTA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29371941 69 + 173848474 TTGAAAAGGA-TTAAGAAATGTTACTTG----CTATTTCTACAAATTCTTTCTTGGTTATTAAAATGTCATGTA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5172095 69 +   6154872 TTGAAAAGGA-TTAAGAAATGTTACTTG----CTATTTCTACAAATTCTTTCTTGGTTATTAAAATGTCATGTA-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74173221 69 + 122973662 TTGAAAAAGA-TTAAGAAACGTTACTTG----CTATTTCTACAAATTCTTTCTTGGTTATTAAAATGTCATGTA-
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171394228 69 - 171630274 TTGAAAAAGA-TTAAGAAATATGACTTG----CTATTTCTACAAATTCTCTCTTGGTTATCAGAACGTCATGTA-
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      219722 69 -    373274 CTGAAAAATA-ATAAGAAATATGACTTG----CTATTTCTACAAATTCTCTCTTGGTTATCAGAATGTCATGTA-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      157202 69 -    285216 CTGAAAAAGA-TTAAGAAATATGACTTG----CTATTTCTACAAATTCTCTCTTGGTTATCAGAATGTCATGTA-
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      945476 66 -   3516910 TTGGAAAAGATTTTAAAAATGTTA--------CTATTTCTAGAAATTCTCTCATGGTTTTTAGAATGCCATGAA-
i proCoq1.NW_012147953v1   C 0 I 26
s canFam3.chr35             25887640 64 +  26524999 TTAGAAATCA-TTAAGAACTGTTACTTG-------TTTCTAGAAA--CTCCCTTGGTTTTTAGGATGCCATGCT-
i canFam3.chr35            I 329 I 27
s dasNov3.JH561790             30753 74 -    302817 TTGGAAAAGA-TAGAGAAATGTTACTCGTTTTCTGTTTCTAGAAATTCCTCCTTGGTTTTTCAAATGCCACTCTC
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I
e manLeu1.NW_012104165v1     1986059  0 +   2316924 C
e chlSab2.chr17             28307826  0 -  71996105 C
e cerAty1.NW_012001495v1     1857734  0 -   2157725 C
e macNem1.NW_012011356v1     1985310 206 -   2996164 I
e macFas5.chr4              29009416  0 - 170955103 C
e rheMac8.chr4              29348360  0 + 172585720 C

a score=42903.000000
s hg38.chr6_GL000254v2_alt    156458 17 +   4827813 AGTAGCTTTGTAGCAAG
s panTro5.chr6              29137617 17 + 175400573 AGTAGCTTTGTAGCAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29372010 17 + 173848474 AGTAGCTTTGTAGCAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5172164 17 +   6154872 AGTAGCTTTGTAGCAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74173290 17 + 122973662 AGTAGCTTTGTAGCAAG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171394297 17 - 171630274 AGTGGCTTTGGAGCAAG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      219791 17 -    373274 AGTGGCTTTGTCACAAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      157271 17 -    285216 AGTGGCTTTGTAGCAGG
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25887731 16 +  26524999 AGTAGC-TTGGGTCAAG
i canFam3.chr35            I 27 C 0
s dasNov3.JH561790             30827 17 -    302817 AGATAATTCATGTCAAA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      945542 26 -   3516910 I
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I
e manLeu1.NW_012104165v1     1986059  0 +   2316924 C
e chlSab2.chr17             28307826  0 -  71996105 C
e cerAty1.NW_012001495v1     1857734  0 -   2157725 C
e macNem1.NW_012011356v1     1985310 206 -   2996164 I
e macFas5.chr4              29009416  0 - 170955103 C
e rheMac8.chr4              29348360  0 + 172585720 C

a score=582620.000000
s hg38.chr6_GL000254v2_alt    156475 193 +   4827813 TCTTGTGTAT--------AGT--AGTTCCTTGCTATATACCTggta------taaagacgaataagatgccctcttgaaggcca-caacctagagatgt--------------ccttcagtt-----------acaaggcagtgtggtaaatactata---agagtgaagcataagagctttgggagtgcaaagaaggaaa-catctaact--gcctgagagaatcaaacagaaagttttg
s panTro5.chr6              29137634 191 + 175400573 TCTTGTGTAT--------AGT--AGTTCCTTGCTATATACCTggta------taaagatgaataagatgccctcttgaaggcca-caacctagagatgt--------------ccttcggtt-----------acaaggcagtgtggtaaatagtata---agagtgaagcataagagctttgggagtgcaaagaaggaaa-catctaact--gcctgagagaatcaaac--aaagttttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29372027 193 + 173848474 TCTTGTGTAT--------AGT--AGTTCcttgctatatacctggta------ttaagatgaataagatgccctcttgaaggcca-caacctagagatgt--------------ccttcggtt-----------acaaggcagtgtggtaaatactata---agagtgaagcataagagctttgggagtgcaaagaaggaaa-catctaact--gcctgagagaatcaaacagaaagttttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5172181 193 +   6154872 TCTTGTGTAT--------AGT--AGTTCCTTGCTATATACCTggta------tgaagacgaataagatgccctcttgaaggcca-caacctagagatgt--------------ccttcagtt-----------acaaggcagtgtggtaaatactata---agagtgaagcataagagctttgggagtgcaaagaaggaaa-catctaact--gcctgagagaatcaaacagaaagttttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74173307 193 + 122973662 TCTTGTGTAT--------AGT--AGTTCCTTGCTATATACCTGGTA------TAAAGATGAATAAGATGCCCTCTTGAAGGCCA-CAACCTAGAGATGT--------------CCTTCAGTT-----------ACAAGGCAGTGTGGTAAATACCGTA---AGAGTGAAGCATAAGAGCTTTGGGAGTGCAAAGAAGGAAA-CATCTAACT--GCCTGAGAGAATCAAACAGAAAGTTTTG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171394314 192 - 171630274 TCTTGCATAT--------GGT--AGTTCCTTGCTATATACCTAGTA------TAAAAATGACTAAGCTG-CCTCTTGAAAGTTA-CAACCTAGAGATAT--------------CCTTCAGTT-----------ACAAGGCAGTGCGGT-AATACTATA---AGCACGAAGTATAAGAGCTGTGGGAGTGCAAAGAAGGAAATTACTTAACT--GCCTGAGAGAATCAAACAGAAAGCTTTG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      219808 191 -    373274 TCTTGTGTAT--------AGT--AGTTCGTTGCTACATACCTGGTA------TAAAGATGACTAAGCTG--CTCTTGAAAGTTA-CAACCTAGAGATAT--------------CCTTCAGTT-----------ACAAGGCAGCGTGGT-AATACTATA---AGCATGAAGCATAAGAGCTGTGGGAGTGCAAAGAAGGAAATTATCTAACT--GCCTGAGAGAATCAAACAGAAAGCTTTG
i cebCap1.NW_016108108v1   C 0 I 11
s aotNan1.NW_018494050v1      157288 192 -    285216 TCTTGTGTAT--------AGT--AGTTTCTTGCTATATACCTGGTA------TAAAGATGACTAAGCTG-CCTCTTGAAAGTTA-CAACCTAGAGATAT--------------CCTTCAGTT-----------ACAAGGCAGTGTGGT-AATACTATA---AGCATGAAGCATAAGAGCTGTGGGAGTGCAAAGAAGGAAATTATCTAACT--GCCTAAGAGAATCAAACAGAAAGCTTTG
i aotNan1.NW_018494050v1   C 0 I 14
s proCoq1.NW_012147953v1      945568 196 -   3516910 CCTTGTATAT--------AGT--AGTTCCTtgctatatactcggtg------tgaagatgaataagatcccctcctgaaggtcaccagcatagagataa--------------ccttcagtt-----------gcaagacaacgtggtgaatactacaa-cacagggaagcataagagctgtggaagcacagaagaggaaa-catctgact--gccggaaaacatccaacagaaagcttcc
i proCoq1.NW_012147953v1   I 26 C 0
s canFam3.chr35             25887747 185 +  26524999 CTCTGTCTA-----------T--AGTTCCTTGCCATTTACCTGGCATCTATCTACAGATGAGGAAGATGCTCCTT---AGGGCA-CAACCTGGAGGTGAGACACACAGATAAGTGTACAGCT-----------ACAACACAGTGTGGCAAATGCTCCAACCAAAGGGAAGTGTCAGAGCTACTGGGG---------------CATTGAACT---CTGAAGACAGTCAAACA----------
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             30844 220 -    302817 TGCTGAATGCCAGCTGTGGGTCAAGTTCCTTGCTATATACTTGATA------TTAACATAAATAccttgccctcttggaggctg-cactctagagatgaga------------catataagtaagtataccacacaatccaaggtgttaaatgctataac-aaaggggaatatacaagctgtgggagctcagagaaggata-catctaactctgccagaaaggatcacacagaaaggttag
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I
e manLeu1.NW_012104165v1     1986059   0 +   2316924 C
e chlSab2.chr17             28307826   0 -  71996105 C
e cerAty1.NW_012001495v1     1857734   0 -   2157725 C
e macNem1.NW_012011356v1     1985310 206 -   2996164 I
e macFas5.chr4              29009416   0 - 170955103 C
e rheMac8.chr4              29348360   0 + 172585720 C

a score=13713.000000
s hg38.chr6_GL000254v2_alt    156668 7 +   4827813 cagcgga
s panTro5.chr6              29137825 7 + 175400573 cagcgga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29372220 7 + 173848474 cagcgga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5172374 7 +   6154872 cagctga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74173500 7 + 122973662 CAGCGGA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171394506 7 - 171630274 TGGAGGA
i calJac3.chr4             C 0 I 4
s proCoq1.NW_012147953v1      945764 7 -   3516910 tagaaga
i proCoq1.NW_012147953v1   C 0 C 0
s canFam3.chr35             25887932 7 +  26524999 CAGAGGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             31064 7 -    302817 cagagaa
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      157480 14 -    285216 I
e cebCap1.NW_016108108v1      219999 11 -    373274 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I
e manLeu1.NW_012104165v1     1986059 0 +   2316924 C
e chlSab2.chr17             28307826 0 -  71996105 C
e cerAty1.NW_012001495v1     1857734 0 -   2157725 C
e macNem1.NW_012011356v1     1985310 206 -   2996164 I
e macFas5.chr4              29009416 0 - 170955103 C
e rheMac8.chr4              29348360 0 + 172585720 C

a score=416368.000000
s hg38.chr6_GL000254v2_alt    156675 257 +   4827813 atggttgattggcgtatcttaaaacataaatacaaatagtcag---------------aaaaagggaaggc------agtaaaagctttctagatggaaagtatatacatacaaagttattaaggcactttt---aaaa-tggtactttcagacagttgagaacagtttggtctagctagaacacagattgaatatgaaggcgaaaggagataaagctgaaaatgtaagcTACATCATGAACAGTCTTGTTGCCAGGATAATGAATTGAACCATTAACAGAT
s panTro5.chr6              29137832 257 + 175400573 caggttgattggcctatcttaaaacataaatacaaatagtcag---------------aaaaagggaaggc------agtaaaagctttctagatggaaagtatatacatacaaagttattaaggcactttt---aaaa-tggtacttttagacaattgagaacagtttggtctagctggaacacagattgaatatgaaggcgaaaggagataaagctgaaaatgtaagGTACATCATGAACAGTCTTGTTGCCAGGATAATGAATTGAACCATTAACAGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29372227 257 + 173848474 caggttgattggcctatcttaaaacataaatacaaatagtcag---------------aaaaagggaaggc------agtaaaagctttctagatggaaagtatatacatacaaagttattaaggcactttt---aaaa-tggtacttttagacaattgagaacagtttggtctagctggaacacagattgaatatgaaggcgaaaggagataaagctgaaaatgtaagcTACATCATGAACAGTCTTGTTGCCAGGATAATGAATTGAACCATTAACAGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5172381 257 +   6154872 caggttgattggcctatcttaaaacataaatacaaatagtcag---------------aaaaagggaaggc------agtaaaacctttctagatggaaagtatatacatacaaagttattaaggcactttt---aaaa-tggtacttttagacagttgagaacagtttggtctagctggaacacagattgaatatgaaggcgaaaggagataaagctgaaaatgtaagcTACATCATGAACAGTCTTGTTGCCAGGATAATGAATTGAACCATTAACAGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74173507 257 + 122973662 CAGGTTGATTGGGCTATCTTAAAACATAAATACAAATAGTCAG---------------AAAAAGGGAAGGC------AGTAAAAGCTTTCTAGATGGAAAGTAAATACATACAAAGTTATTAAGGCACTTTT---AAAA-TGGTACTTTTAGACAGTTGAGAACAGTTTGGTTTAGCTGGAACACagattgaatatgaaggtgaaagcagataaagctgaaaatgtagGCTACATCATGAACAGTCTTGTTGCCAGGATAATGAATTGAACCATTAACAGAT
i nomLeu3.chr1a            C 0 C 0
s proCoq1.NW_012147953v1      945771 253 -   3516910 caggtcgattgggctatattaaaacgtgagtacagat----ag---------------aaaaagagaaggt-----aagtacaaactttctgtatgaaaagtatttatgtacaaagttattgaggcattttt---aaaagtggtacttttagacaatggagaacagtttggtctagctggagcacagactgaatgtgaaagtgaatggaggtgaggctggaaagataggctagctcat--agagtcttgttgccaggctaatgaattgaaccattagcagat
i proCoq1.NW_012147953v1   C 0 C 0
s canFam3.chr35             25887939 241 +  26524999 CAGGCTGA-TGGGCCATCTTAAAACATGAGTACAGATGGTTAGACCAACTGTTAGACAAGGGAGGGAGGGA------GACAAGAGGTTTTCAGCTGGA--------ACGTACGAAGTTACAGAGGCATTCTT---TAGA-TGGTACTGTTGGCCAATGGA--------------------AGCACAGATTGAGTAGGAAGG-GGAAGGATGTGGGGCTGGAGAAGCAGGCTGGAT-ATGAAGAGTCTTGTTGCCAGGCTCATGAGCTGGCCCATCACCAGGT
i canFam3.chr35            C 0 I 13
s dasNov3.JH561790             31071 246 -    302817 gaggttaat----ctatcat-aaatatgagtactaatggtcag---------------gagaggggaaggggagataggtgagaacttcccagatggaaagaatatatgtacaaaatcactgaagcaTTTTCTTAAAAA-TG----TTTTGGACAATTGAAAATAATTTGGTCTGACTGGAA---AGTCTGAATATGAAGGGGGAAAGA-------CAGGAAAGGTGGGCTAAATCAT-AAGAATCTTGTTGCCATCCTAAAGATTTGAACCATTAGCAGAT
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      157480  14 -    285216 I
e cebCap1.NW_016108108v1      219999  11 -    373274 I
e calJac3.chr4             171394513   4 - 171630274 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I
e manLeu1.NW_012104165v1     1986059   0 +   2316924 C
e chlSab2.chr17             28307826   0 -  71996105 C
e cerAty1.NW_012001495v1     1857734   0 -   2157725 C
e macNem1.NW_012011356v1     1985310 206 -   2996164 I
e macFas5.chr4              29009416   0 - 170955103 C
e rheMac8.chr4              29348360   0 + 172585720 C

a score=11247.000000
s hg38.chr6_GL000254v2_alt    156932 6 +   4827813 GCTAAG
s panTro5.chr6              29138089 6 + 175400573 GTTAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29372484 6 + 173848474 GCTAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5172638 6 +   6154872 GCTAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74173764 6 + 122973662 GCTAAG
i nomLeu3.chr1a            C 0 C 0
s proCoq1.NW_012147953v1      946024 6 -   3516910 gctaag
i proCoq1.NW_012147953v1   C 0 I 21142
s dasNov3.JH561790             31317 6 -    302817 GCTAAG
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25888180 13 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      157480 14 -    285216 I
e cebCap1.NW_016108108v1      219999 11 -    373274 I
e calJac3.chr4             171394513 4 - 171630274 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I
e manLeu1.NW_012104165v1     1986059 0 +   2316924 C
e chlSab2.chr17             28307826 0 -  71996105 C
e cerAty1.NW_012001495v1     1857734 0 -   2157725 C
e macNem1.NW_012011356v1     1985310 206 -   2996164 I
e macFas5.chr4              29009416 0 - 170955103 C
e rheMac8.chr4              29348360 0 + 172585720 C

a score=-90.000000
s hg38.chr6_GL000254v2_alt    156938 3 +   4827813 -AAT
s panTro5.chr6              29138095 3 + 175400573 -AAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29372490 3 + 173848474 -AAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5172644 3 +   6154872 -AAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74173770 3 + 122973662 -AAG
i nomLeu3.chr1a            C 0 C 0
s dasNov3.JH561790             31323 3 -    302817 CAG-
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888180 13 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      157480 14 -    285216 I
e cebCap1.NW_016108108v1      219999 11 -    373274 I
e calJac3.chr4             171394513 4 - 171630274 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I
e manLeu1.NW_012104165v1     1986059 0 +   2316924 C
e chlSab2.chr17             28307826 0 -  71996105 C
e cerAty1.NW_012001495v1     1857734 0 -   2157725 C
e macNem1.NW_012011356v1     1985310 206 -   2996164 I
e macFas5.chr4              29009416 0 - 170955103 C
e rheMac8.chr4              29348360 0 + 172585720 C

a score=4820.000000
s hg38.chr6_GL000254v2_alt    156941 5 +   4827813 GTGTG
s panTro5.chr6              29138098 5 + 175400573 GTGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29372493 5 + 173848474 GTGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5172647 5 +   6154872 GTGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74173773 5 + 122973662 GTGTG
i nomLeu3.chr1a            C 0 C 0
e dasNov3.JH561790             31326 0 -    302817 C
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888180 13 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1527577 3716 -   2232465 I
e aotNan1.NW_018494050v1      157480 14 -    285216 I
e cebCap1.NW_016108108v1      219999 11 -    373274 I
e calJac3.chr4             171394513 4 - 171630274 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I
e manLeu1.NW_012104165v1     1986059 0 +   2316924 C
e chlSab2.chr17             28307826 0 -  71996105 C
e cerAty1.NW_012001495v1     1857734 0 -   2157725 C
e macNem1.NW_012011356v1     1985310 206 -   2996164 I
e macFas5.chr4              29009416 0 - 170955103 C
e rheMac8.chr4              29348360 0 + 172585720 C

a score=99419.000000
s hg38.chr6_GL000254v2_alt    156946 93 +   4827813 TAggccaggcacggtggctcacgcctgtaatcccaccactttgggaggctgacgctggtggatcac--gaggtcaggagatctagaccatcctgg
s panTro5.chr6              29138103 93 + 175400573 TAggccaggcacggtggctcacgcctgtaatcccaccactttgggaggccgaggctggtggatcac--gaggtcaggagatctagaccatcctgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29372498 93 + 173848474 TAggccaggcacggtggctcacgcctgtaatcccaccactttgggaggccaaggctggtggatcac--gaggtcaggagatctagaccatcctgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5172652 93 +   6154872 TAggccaggcacggtggctcacgcctgtaatcccaccactctgggaggccgaggccggtggatcac--gaggtcaggagatctagaccatcctgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74173778 93 + 122973662 TAggccgggcacggtggctcacgcctgtaatcccaccactttgggaggccgaggccagtggatcat--gaggtcaggagatctagaccatcctgg
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873742           1531293 89 -   2232465 TGGGGCAGTAgcagtagttcacatgtgtaatcctagccctctaggaggttaaggcaggaaaatcacttgagctcaggagttcgagaccg------
i otoGar3.GL873742         I 3716 C 0
e dasNov3.JH561790             31326  0 -    302817 C
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888180 13 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e aotNan1.NW_018494050v1      157480 14 -    285216 I
e cebCap1.NW_016108108v1      219999 11 -    373274 I
e calJac3.chr4             171394513  4 - 171630274 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I
e manLeu1.NW_012104165v1     1986059  0 +   2316924 C
e chlSab2.chr17             28307826  0 -  71996105 C
e cerAty1.NW_012001495v1     1857734  0 -   2157725 C
e macNem1.NW_012011356v1     1985310 206 -   2996164 I
e macFas5.chr4              29009416  0 - 170955103 C
e rheMac8.chr4              29348360  0 + 172585720 C

a score=845559.000000
s hg38.chr6_GL000254v2_alt    157039 173 +   4827813 ctaacacagtgaaaccctgtctctactaaaaatacaaaaaattagcccggcgtggtggcaggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagccgagatcgcctcactgcactccagcctgg--tgacag
s panTro5.chr6              29138196 173 + 175400573 ctaacacagtgaaaccctgtctctactaaaaatacaaaaaattagccgggcgtggtggcaggcacctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagccgagatcgcctcactgcactccagcctgg--tgacag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29372591 173 + 173848474 ctaacacagtgaaaccctgtctctactaaaaatacaaaaaattagccgggcgtggtggcaggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagccgagatcgcctcactgcactccagcctgg--tgacag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5172745 173 +   6154872 ctaacacagtgaaaccctgtctctactaaaaatacaaaaaattagccgtgcgtagtggcaggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagccgagatcgcctcactgcactccagcctgg--tgacag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74173871 173 + 122973662 ctaacacagtgaaatcccctctctactaaaaatacaaaaaattagccgggcatggtggcaggcgcctgtggtcccaactacttgggaggctgaggcaggagaatggcgtgaacccaggaggcagagcttgcagtgagccaagatcgccccacggcactccagcctgg--tgacag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29348360 173 + 172585720 ctaacatggtgaaacctcatctctactaagaatacaaaaaataagccgggtgtggtggcccaagcctgtagtcccagctactcggaagtctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccgagatcaccccactgcactccaatctgg--tgacag
i rheMac8.chr4             C 0 I 24
s macFas5.chr4              29009416 173 - 170955103 ctaacatggtgaaacctcatctctactaagaatacaaaaaataagccgggtgtggtggcccaagcctgtagtcccagctactcggaagtctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccgagatcaccccactgcactccaatctgg--tgacag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1985516 173 -   2996164 ctaacatggtgaaacctcatctctactaagaatacaaaaaataagccgggtgtggtggcccaagcctgtagtcccagctactcggaagtctgaggcaagagaattgcttgaacctgggaggtggaggttgcagtgagccgagatcaccccactgcactccaatctgg--tgacag
i macNem1.NW_012011356v1   I 206 I 24
s cerAty1.NW_012001495v1     1857734 173 -   2157725 ctaacatggtgaaacctcatctctactaagaatacaaaaaataagccgggtgtggtggcacacgcctgtagtcccagctactcggaagtctgaggcaggagaattgcttgaacctgggaggtggaggttgtagtgagccaagatcaccccactgcactccaacctgg--tgacag
i cerAty1.NW_012001495v1   C 0 I 24
s chlSab2.chr17             28307826 173 -  71996105 ctaacatggtgaaacctcatctctactaagaatacaaaaaataagccgggtgtggtcgcacacgcctgtagtcccagctactcggaagtctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccgagatcaccccactgcactccaacctgg--tgacag
i chlSab2.chr17            C 0 I 26
s manLeu1.NW_012104165v1     1986059 173 +   2316924 ctaacatggtgaaacctcatctctactaagaatacaaaaaataagccgggtgtggtggcacacgcctgtagtcccagctactcggaagtctgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccaagatcaccccactgcactccaacctgg--tgacag
i manLeu1.NW_012104165v1   C 0 I 24
s otoGar3.GL873742           1531382 162 -   2232465 -----acactgagactccatctctactaaaaa-aaggaaaattagtcaggcattgtggc-ggtgcctgtagtcccagctagtgagaaggctgagacaggagtattccttgaacccag------gagtttgctgtgagctagactgatgccagggcactctagcctgggacaacag
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             31326   0 -    302817 C
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888180  13 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e aotNan1.NW_018494050v1      157480  14 -    285216 I
e cebCap1.NW_016108108v1      219999  11 -    373274 I
e calJac3.chr4             171394513   4 - 171630274 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I

a score=26972.000000
s hg38.chr6_GL000254v2_alt    157212 29 +   4827813 agcgagaatccgtct-c----aaaaaaaaaaaaa
s panTro5.chr6              29138369 33 + 175400573 agcgagaatccgtct-caaaaaaaaaaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29372764 30 + 173848474 agcgagaatccgtctac----aaaaaaaaaaaaa
i panPan2.chr6             C 0 I 32
s gorGor5.CYUI01015250v1     5172918 33 +   6154872 agcgagaatccgtct-caaaaaaaaaaaaaaaaa
i gorGor5.CYUI01015250v1   C 0 I 1
s nomLeu3.chr1a             74174044 33 + 122973662 agcgagaatccgtct-caaaaaaaaaaaaaaaaa
i nomLeu3.chr1a            C 0 I 3
s macFas5.chr4              29009589 13 - 170955103 ---------------------GAAGAAAGAAGAA
i macFas5.chr4             C 0 C 0
s otoGar3.GL873742           1531544 29 -   2232465 agtgagattgtggct-c----aaaacaaaacaaa
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             31326  0 -    302817 C
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888180 13 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e aotNan1.NW_018494050v1      157480 14 -    285216 I
e cebCap1.NW_016108108v1      219999 11 -    373274 I
e calJac3.chr4             171394513  4 - 171630274 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I
e manLeu1.NW_012104165v1     1986232 24 +   2316924 I
e chlSab2.chr17             28307999 26 -  71996105 I
e cerAty1.NW_012001495v1     1857907 24 -   2157725 I
e macNem1.NW_012011356v1     1985689 24 -   2996164 I
e rheMac8.chr4              29348533 24 + 172585720 I

a score=1068.000000
s hg38.chr6_GL000254v2_alt    157241 6 +   4827813 -gaaGGT
s panTro5.chr6              29138402 6 + 175400573 -gaaGGT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5172952 6 +   6154872 -aaaGGT
i gorGor5.CYUI01015250v1   I 1 C 0
s nomLeu3.chr1a             74174080 6 + 122973662 -aaaGAT
i nomLeu3.chr1a            I 3 C 0
s macFas5.chr4              29009602 6 - 170955103 -GGAGAA
i macFas5.chr4             C 0 C 0
s otoGar3.GL873742           1531573 5 -   2232465 caaaa--
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             31326 0 -    302817 C
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888180 13 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e aotNan1.NW_018494050v1      157480 14 -    285216 I
e cebCap1.NW_016108108v1      219999 11 -    373274 I
e calJac3.chr4             171394513 4 - 171630274 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I
e manLeu1.NW_012104165v1     1986232 24 +   2316924 I
e chlSab2.chr17             28307999 26 -  71996105 I
e cerAty1.NW_012001495v1     1857907 24 -   2157725 I
e macNem1.NW_012011356v1     1985689 24 -   2996164 I
e rheMac8.chr4              29348533 24 + 172585720 I
e panPan2.chr6              29372794 32 + 173848474 I

a score=1500.000000
s hg38.chr6_GL000254v2_alt    157247 1 +   4827813 G
s panTro5.chr6              29138408 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5172958 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74174086 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29009608 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s dasNov3.JH561790             31326 1 -    302817 G
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888180 13 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1531578 0 -   2232465 C
e aotNan1.NW_018494050v1      157480 14 -    285216 I
e cebCap1.NW_016108108v1      219999 11 -    373274 I
e calJac3.chr4             171394513 4 - 171630274 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I
e manLeu1.NW_012104165v1     1986232 24 +   2316924 I
e chlSab2.chr17             28307999 26 -  71996105 I
e cerAty1.NW_012001495v1     1857907 24 -   2157725 I
e macNem1.NW_012011356v1     1985689 24 -   2996164 I
e rheMac8.chr4              29348533 24 + 172585720 I
e panPan2.chr6              29372794 32 + 173848474 I

a score=90.000000
s hg38.chr6_GL000254v2_alt    157248 1 +   4827813 T
s panTro5.chr6              29138409 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5172959 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74174087 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s dasNov3.JH561790             31327 1 -    302817 T
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888180 13 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1531578 0 -   2232465 C
e aotNan1.NW_018494050v1      157480 14 -    285216 I
e cebCap1.NW_016108108v1      219999 11 -    373274 I
e calJac3.chr4             171394513 4 - 171630274 I
e colAng1.NW_012115566v1     1865207 6545 -   3067355 I
e manLeu1.NW_012104165v1     1986232 24 +   2316924 I
e chlSab2.chr17             28307999 26 -  71996105 I
e cerAty1.NW_012001495v1     1857907 24 -   2157725 I
e macNem1.NW_012011356v1     1985689 24 -   2996164 I
e macFas5.chr4              29009609 0 - 170955103 C
e rheMac8.chr4              29348533 24 + 172585720 I
e panPan2.chr6              29372794 32 + 173848474 I

a score=4938.000000
s hg38.chr6_GL000254v2_alt    157249 3 +   4827813 GTG
s panTro5.chr6              29138410 3 + 175400573 GTG
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5172960 3 +   6154872 GTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74174088 3 + 122973662 GTG
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29009609 3 - 170955103 GAG
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28308025 3 -  71996105 gag
i chlSab2.chr17            I 26 C 0
s colAng1.NW_012115566v1     1871752 3 -   3067355 gTG
i colAng1.NW_012115566v1   I 6545 C 0
s dasNov3.JH561790             31328 3 -    302817 GAG
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888180 13 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1531578 0 -   2232465 C
e aotNan1.NW_018494050v1      157480 14 -    285216 I
e cebCap1.NW_016108108v1      219999 11 -    373274 I
e calJac3.chr4             171394513 4 - 171630274 I
e manLeu1.NW_012104165v1     1986232 24 +   2316924 I
e cerAty1.NW_012001495v1     1857907 24 -   2157725 I
e macNem1.NW_012011356v1     1985689 24 -   2996164 I
e rheMac8.chr4              29348533 24 + 172585720 I
e panPan2.chr6              29372794 32 + 173848474 I

a score=-1132.000000
s hg38.chr6_GL000254v2_alt    157252 1 +   4827813 -T
s panTro5.chr6              29138413 1 + 175400573 -T
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5172963 1 +   6154872 -T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74174091 1 + 122973662 -T
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29009612 1 - 170955103 -T
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28308028 1 -  71996105 -T
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1871755 1 -   3067355 -T
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25888193 1 +  26524999 -T
i canFam3.chr35            I 13 C 0
s dasNov3.JH561790             31331 1 -    302817 A-
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1531578 0 -   2232465 C
e aotNan1.NW_018494050v1      157480 14 -    285216 I
e cebCap1.NW_016108108v1      219999 11 -    373274 I
e calJac3.chr4             171394513 4 - 171630274 I
e manLeu1.NW_012104165v1     1986232 24 +   2316924 I
e cerAty1.NW_012001495v1     1857907 24 -   2157725 I
e macNem1.NW_012011356v1     1985689 24 -   2996164 I
e rheMac8.chr4              29348533 24 + 172585720 I
e panPan2.chr6              29372794 32 + 173848474 I

a score=360597.000000
s hg38.chr6_GL000254v2_alt    157253 59 +   4827813 AATATTAGCTTTCAGTTTTATGCAAGTCACTATAGTGACAGTGTGAAAGATGGTCTTCA
s panTro5.chr6              29138414 59 + 175400573 AATATTAGCTTTCAGTTTTATGCAAGTCACTATAGTGACAGTGTGAAAGATGGTCTTCA
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5172964 59 +   6154872 AATATCAGCTTTCAGTTTTATGCAAGTCACTATAGTGACAGAGTGAAAGATGGTCTTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74174092 59 + 122973662 AATATTAGCTTTGAGTTTTATGCAAGTCACTATAGTGACAGTGTGAAAGATGGTCTTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29348557 59 + 172585720 AATATTAGCTTTGAGTTTTATGCAAGTCACTATAGTGACAGTGTGGAAGATGGTCTTCA
i rheMac8.chr4             I 24 C 0
s macFas5.chr4              29009613 59 - 170955103 AATATTAGCTTTGAGTTTTATGCAAGTCACTATAGTGACAGTGTGGAAGATGGTCTTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1985713 59 -   2996164 AATATTAGCTTTGAGTTTTATGCAAGTCACTATAGTGACAGTGTGGAAGATGGTCTTCA
i macNem1.NW_012011356v1   I 24 C 0
s cerAty1.NW_012001495v1     1857931 59 -   2157725 AATATTAGCTTTGAGTTTTATGCAAGTCACTATAGTGACAGTGTGGAAGATGGTCTTCA
i cerAty1.NW_012001495v1   I 24 C 0
s chlSab2.chr17             28308029 59 -  71996105 AATATTAGCTTTGAGTTTTATGCAAGTCACTATAGTGACAGTGTGGAAGATGGTCTTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1986256 59 +   2316924 AATATTAGCTTTGAGTTTTATGCAAGTCACTATAGTGACAGTGTGGAAGATGGTCTTCA
i manLeu1.NW_012104165v1   I 24 C 0
s colAng1.NW_012115566v1     1871756 59 -   3067355 AATATTAGCTTTGAGTTTTATGCAAGTCGCTATAGTGACAGTGTGGAAGATGGTCTTCA
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25888194 59 +  26524999 GAGAGTAGCTTTGGGCTTTATGGCAGTCACTGTGGTGATGGCATGGATGATAGACCCCA
i canFam3.chr35            C 0 I 5065
s dasNov3.JH561790             31332 59 -    302817 AATACTAGGTTTGGGTTTTATGAAAGTCACTGTAGTGATAGTGTAGAATGTGGACTTAT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1531578  0 -   2232465 C
e aotNan1.NW_018494050v1      157480 14 -    285216 I
e cebCap1.NW_016108108v1      219999 11 -    373274 I
e calJac3.chr4             171394513  4 - 171630274 I
e panPan2.chr6              29372794 32 + 173848474 I

a score=62073.000000
s hg38.chr6_GL000254v2_alt    157312 15 +   4827813 AGGAGAAAATGGACA
s panTro5.chr6              29138473 15 + 175400573 AGGAGAAAATGGACA
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5173023 15 +   6154872 AGGAGAAAATGGACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74174151 15 + 122973662 AGCAGAAAATGGACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29348616 14 + 172585720 GGGAG-AAATGGACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29009672 14 - 170955103 GGGAG-AAATGGACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1985772 14 -   2996164 GGGAG-AAATGGACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1857990 14 -   2157725 GGGAG-AAATGGACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28308088 14 -  71996105 GGGAG-AAATGGACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1986315 14 +   2316924 GGGAG-AAATGGACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1871815 15 -   3067355 AGGAGAAAATGGACA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1531578  3 -   2232465 ------------ata
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             31391 15 -    302817 AGGAGAAAATGGACA
i dasNov3.JH561790         C 0 I 17264
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888253 5065 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e aotNan1.NW_018494050v1      157480 14 -    285216 I
e cebCap1.NW_016108108v1      219999 11 -    373274 I
e calJac3.chr4             171394513  4 - 171630274 I
e panPan2.chr6              29372794 32 + 173848474 I

a score=879322.000000
s hg38.chr6_GL000254v2_alt    157327 181 +   4827813 AGACTggccgggcacggtggctcacgcctgtaatcccagccctttggaggccaaggcagacaaatctcttgcggtcaggagctcaagacaggcctggccaacattgtgaa-aacccgtctctactaaaaatacaaaaattagccgggcgtggtggcacgggcc-----tcccagctactcggaagac
s panTro5.chr6              29138488 181 + 175400573 AGACTggccgggcacggtggctcacgcccgtaatcccagccctttggaggccaaggcaggcaaatctcttgaggtcaggagctcaagacaggcctggccaacattgtgaa-aacccgtctctactaaaaatacaaaaattagccgggcgtggtggcacgggcc-----tcccagctactcggaagac
i panTro5.chr6             C 0 I 2
s gorGor5.CYUI01015250v1     5173038 181 +   6154872 AGACTggccgggcacggtggctcacgcctgtaatcccagccctttggaggccaaggcaggcaaatctcttgcggtcaggagctcaagacaggcctggccaacattgtgaa-aacccgtctctactaaaaatacaaaaattagccgggcgtggtggcacgggcc-----tcccagctactcagaagac
i gorGor5.CYUI01015250v1   C 0 I 2
s nomLeu3.chr1a             74174166 179 + 122973662 AGACTggccgggcacggtggcttacgcctgtaattgcagccctttggaggccgaggcagacaaa--tcttgcggtcaggagctcaagacaagcctggccaacattgtgaa-aacccgtctctactaaaaatacaaaaattagacgggcgtggtggcacgggcc-----tcccagctactcggaagac
i nomLeu3.chr1a            C 0 I 2
s rheMac8.chr4              29348630 178 + 172585720 AGACTggccgtgcacagtggctcacgcctgtaatcccagccctttggaggccgaggcaggcaaatctcttgctgtcaggagctcaagacatgcctggccaacattgtgaa-aacccgtctctactaaaaatac---aattatccgggcatggtggcatgggcc-----ttccaggtacttggaagac
i rheMac8.chr4             C 0 I 2
s macFas5.chr4              29009686 178 - 170955103 AGACTggccgtgcacagtggctcacgcctgtaatcccagccctttggaggccgaggcaggcaaatctcttgctgtcaggagctcaagacatgcctggccaacattgtgaa-aacccgtctctactaaaaatac---aattatccgggcatggtggcacgggcc-----ttccaggtacttggaagac
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1     1985786 178 -   2996164 AGACTggccgtgcacagtggctcacgcctgtaatcccagccctttggaggccgaggcaggcaaatctcttgctgtcaggagctcaagacatgcctggccaacattgtgaa-aacccgtctctactaaaaatac---aattatccgggcatggtggcacgggcc-----ttccaggtacttggaagac
i macNem1.NW_012011356v1   C 0 I 2
s cerAty1.NW_012001495v1     1858004 178 -   2157725 AGACTggccgtgcacagtggctcacgcctgtaatcccagccctttggaggccgaggcaggtaaatctcttgctgtcaggagctcaagacatgcctggccaacattgtgaa-aacccgtctctactaaaaatac---aattatccgggcatggtggcacgggcc-----ttccaggtacttggaagac
i cerAty1.NW_012001495v1   C 0 I 2
s chlSab2.chr17             28308102 178 -  71996105 AGACTggccgtgcacagtggctcacgcctgtaatcccagccctttggaggccgaggcaggcaaatctcttgctgtcaggagctcaagacatgcctggccaacattgtgaa-aacccgtctctactaaaaatac---aattatccgggcatggtggcatgggcc-----ttccaggtacttggaagac
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012104165v1     1986329 178 +   2316924 AGACTggccgtgcacagtggctcacgcctgtaatcccagccctttggaggccgaggcaggtaaatctcttgctgtcaggagctcaagacatgcctggccaacattgtgaa-aacccgtctctactaaaaatac---aattatccgggcatagtggcacgggcc-----ttccaggtacttggaagac
i manLeu1.NW_012104165v1   C 0 I 2
s colAng1.NW_012115566v1     1871830 178 -   3067355 AGACTggccgtgcacagtggctcacgcctgtaatcccagccctttggaggccgaggcaggcaaatctcttgctgtcaggagctcaagacatgcctggccaacattgtgaa-aacccgtctctactaaaaatac---aattatccgggcatggtggcacgggcc-----ttccaggtacttggaagac
i colAng1.NW_012115566v1   C 0 I 2
s otoGar3.GL873742           1531581 139 -   2232465 aaaCT------------------------------------------AAGTTAaggtaggatgatagcttaaagtcaggagttcaagaccagccagagcaagattgaggataacatatctataacagaaa------aattaggctggcatagtggcaggtgcttgtagtcccagggatttaggaggc
i otoGar3.GL873742         C 0 I 2
e dasNov3.JH561790             31406 17264 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888253 5065 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e aotNan1.NW_018494050v1      157480  14 -    285216 I
e cebCap1.NW_016108108v1      219999  11 -    373274 I
e calJac3.chr4             171394513   4 - 171630274 I
e panPan2.chr6              29372794  32 + 173848474 I

a score=424053.000000
s hg38.chr6_GL000254v2_alt    157508 66 +   4827813 aggcaggagaatcgtttgaaccggggaggcagaggttgcagaaagccgagatcgcgccactgcact
s panTro5.chr6              29138671 66 + 175400573 aggcaggagaatcgtttgaaccggggaggcagaggttgcagaaagccgagatcgcgccactgcact
i panTro5.chr6             I 2 C 0
s panPan2.chr6              29372826 66 + 173848474 aggcaggagaatcgtttgaaccggggaggcagaggttgcagaaagccgagatcgcgccactgcact
i panPan2.chr6             I 32 C 0
s gorGor5.CYUI01015250v1     5173221 66 +   6154872 aggcaggagaatcgtttgaaccggggaggcagaggttgcagaaagccgagatcgcgccactgcact
i gorGor5.CYUI01015250v1   I 2 C 0
s nomLeu3.chr1a             74174347 66 + 122973662 aagcaggagaatcgtttgaaccagggaggcagaggttgcagaaagccgagatcgcgccactgcact
i nomLeu3.chr1a            I 2 C 0
s rheMac8.chr4              29348810 66 + 172585720 aggcgggagaatcatttgaaccggggaggcagaggttgcagagagctgagatcgtgccactgcact
i rheMac8.chr4             I 2 C 0
s macFas5.chr4              29009866 66 - 170955103 aggcgggagaatcatttgaaccggggaggcagaggttgcagagagctgagatcgtgccactgcact
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1     1985966 66 -   2996164 aggcgggagaatcatttgaaccggggaggcagaggttgcagagagctgagatcgtgccactgcact
i macNem1.NW_012011356v1   I 2 C 0
s cerAty1.NW_012001495v1     1858184 66 -   2157725 aggcgggagaatcatttgaaccggggaggcagaggttgcagagagctgagatcgtgccactgcact
i cerAty1.NW_012001495v1   I 2 C 0
s chlSab2.chr17             28308282 66 -  71996105 aggcgggagaatcatttgaaccggggaggcagaggttgcagagagctgagatcgtgccactgcact
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012104165v1     1986509 66 +   2316924 aggcgggagaatcatttgaaccggggaggcagaggttgcagagagctgagatcgtgccactgcact
i manLeu1.NW_012104165v1   I 2 C 0
s colAng1.NW_012115566v1     1872010 66 -   3067355 aggcaggagaatcgtttgaaccggggaggcagaggttgcagagagctgagatcgtgccactgcact
i colAng1.NW_012115566v1   I 2 C 0
s otoGar3.GL873742           1531722 66 -   2232465 aggcaggaggtacacttaagcccaggagttggaggttgcaatgggctacaattacagcactgcagt
i otoGar3.GL873742         I 2 I 427
e dasNov3.JH561790             31406 17264 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888253 5065 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e aotNan1.NW_018494050v1      157480 14 -    285216 I
e cebCap1.NW_016108108v1      219999 11 -    373274 I
e calJac3.chr4             171394513  4 - 171630274 I

a score=71396.000000
s hg38.chr6_GL000254v2_alt    157574 29 +   4827813 ccTGG----------------gattgattgattgattgattgatt--------
s panTro5.chr6              29138737 25 + 175400573 ccTGG--------------------gattgattgattgattgatt--------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29372892 25 + 173848474 ccTGG--------------------gattgattgattgattgatt--------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5173287 45 +   6154872 ccTGGgattgattgattgattgattgattgattgattgattgact--------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74174413 22 + 122973662 ccTGG--------------------GATTGATTGATTGATTG-----------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29348876 25 + 172585720 ccTGg--------------------gatggatggatggatggatg--------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29009932 25 - 170955103 ccTGg--------------------gatggatggatggatggatg--------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1986032 21 -   2996164 ccTG------------------------GGATGGATGGATGGATG--------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1858250 29 -   2157725 ccTGg--------------------gatggatggatggattgattgatT----
i cerAty1.NW_012001495v1   C 0 I 2544
s chlSab2.chr17             28308348 25 -  71996105 ccTGg--------------------gatggatggatggattgatt--------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1986575 25 +   2316924 ccTGg--------------------gatggatggatggatggatt--------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1872076 28 -   3067355 -cTGG--------------------gatggatggatagattgatt----gatt
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             31406 17264 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888253 5065 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1531788 427 -   2232465 I
e aotNan1.NW_018494050v1      157480 14 -    285216 I
e cebCap1.NW_016108108v1      219999 11 -    373274 I
e calJac3.chr4             171394513  4 - 171630274 I

a score=64267.000000
s hg38.chr6_GL000254v2_alt    157603 16 +   4827813 gattTAGAC-AAAAGGT
s panTro5.chr6              29138762 16 + 175400573 gattTAGAC-AAAAGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29372917 17 + 173848474 gattTAGACAAAAAGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5173332 16 +   6154872 gattTAGAC-AAAAGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74174435 11 + 122973662 -----AGAC-AAAAGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29348901 16 + 172585720 gatTTAGAG-AAAAGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29009957 16 - 170955103 gatTTAGAG-AAAAGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1986053 16 -   2996164 GATTTAGAG-AAAAGGT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28308373 16 -  71996105 gaCTTAGAG-AAAAGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1986600 16 +   2316924 gatTTAGAG-AAAAGGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1872104 16 -   3067355 gattTAGAG-AAAAGGT
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             31406 17264 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888253 5065 +  26524999 I
e saiBol1.JH378348            219048 1472 -    375362 I
e otoGar3.GL873742           1531788 427 -   2232465 I
e aotNan1.NW_018494050v1      157480 14 -    285216 I
e cebCap1.NW_016108108v1      219999 11 -    373274 I
e calJac3.chr4             171394513  4 - 171630274 I
e cerAty1.NW_012001495v1     1858279 2544 -   2157725 I

a score=489985.000000
s hg38.chr6_GL000254v2_alt    157619 93 +   4827813 ctctgttgcctaggctggagtgcactggtgtgatctcggctcacagcaacttacacctcccgggtttaagtgattctcccaccttcgccccct
s panTro5.chr6              29138778 93 + 175400573 ctctgttgcccaggctggagtgcactggtgtgatctcggctcacagcaacttacacctcccgggtttaagtgattctcccacctccgccccct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29372934 93 + 173848474 ctctgttgcccaggctggagtgcactggtgtgatctcggctcacagcaacttacacctcccgggtttaagtgattctcccacctccgccccct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5173348 92 +   6154872 ctctgttgcccaggctggagtgcactggtgtgatctcggctcacagcaacttacacctcccgggtttaagtgattctcccacctccg-cccct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74174446 93 + 122973662 ctctgttgcccaggctggagcgcactggtgtgatctcggctcacagcaacttacacctcccgggtttaagtgattctcccacctccgccccct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29348917 92 + 172585720 ctctgttgcccaggctggagtgcagtggtgtgatcttggctcacaacaacttccacctcctgggtttaagtgattctcccacctcca-ccccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29009973 92 - 170955103 ctctgttgcccaggctggagtgcagtggtgtgatcttggctcacaacaacttccacctcctgggtttaagtgattctcccacctcca-ccccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1986069 92 -   2996164 ctctgttgcccaggctggagtgcagtggtgtgatcttggctcacaacaacttccacctcctgggtttaagtgattctcccacctcca-ccccc
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28308389 92 -  71996105 ctctgttgcccaggctggagtgcagtggtgtgatcttggctcacagcaacttccacctcctgggtttaagtgattctcccacctcca-ctccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1986616 92 +   2316924 ctctgttgcccaggctggagtgcagtggtgtgatcttggctcacagcaacttccacctcctgggtttaagtgattctcccacatcca-ccccc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1872120 92 -   3067355 ctctgttgcccaggctgcagtgcagtggtgtgatctcggctcacagcaacttccacctcccgagtttaagtgattctcccacctcca-tcccc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            154455 92 +    375362 ctctattgcccaggctggagtgcagtggtgcaatcttggctcactgcaactgctgcctcaaagattcaagagattctcatgcctcag-cctcc
i saiBol1.JH378348         T 61183 C 0
e dasNov3.JH561790             31406 17264 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888253 5065 +  26524999 I
e otoGar3.GL873742           1531788 427 -   2232465 I
e aotNan1.NW_018494050v1      157480 14 -    285216 I
e cebCap1.NW_016108108v1      219999 11 -    373274 I
e calJac3.chr4             171394513  4 - 171630274 I
e cerAty1.NW_012001495v1     1858279 2544 -   2157725 I

a score=903606.000000
s hg38.chr6_GL000254v2_alt   157712 143 +   4827813 cgagtagctgggactacaggcacgcaccgctacacccagctaatttttgtattttctggtagggacagggtttcaccatgttggccaggctggtctcgaactcctgagctcaagtgattcgcccacctcagcctcccaaagtg
s panTro5.chr6             29138871 143 + 175400573 cgagtagctgggactacaggcgcgcaccgccacacccggctaatttttgtattttttggtagagacagggtttcaccatgttggccaggctggtctcgaactcctgagctcaagtgattcgcccacctcagcctcccaaagtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29373027 143 + 173848474 cgagtagctgggactacaggcgcgcaccgccacacccggctaatttttgtattttttggtagagacagggtttcaccatgttcgccaggctggtctcgaactcctgagctcaagtgattcgcccacctcagcctcccaaagtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5173440 143 +   6154872 ggagtagctgggactacaggcgcgcaccgccacacccggctaatgtttgtattttttggtagagtcagggtttcaccatgttggccaggctggtctcgaactcctgagctcaagtgattcgcccacctcagcctcccaaagtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74174539 143 + 122973662 cgagtagctgggactacaggcacgcaccgccatacctggctaatttttgtattttttggtagagacagggtttcaccatgttgaccaggctggtctcgaactcctgagctcaagtgattcgcccacctcagcctcccaaagtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29349009 143 + 172585720 cgagtagctggtactgcaggcacacaccatcacacctggctaatttttgtattttttggtagagacggggtttcaccatgttgaccaggctggtctcaaactcctgaccttgagtgatttgcccacctcagcctcccaaagtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29010065 143 - 170955103 cgagtagctggtactgcaggcacacaccatcacacctggctaatttttgtattttttggtagagacggggtttcaccatgttgaccaggctggtctcaaactcctgacctcgagtgatttgcccacctcagcctcccaaagtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    1986161 143 -   2996164 cgagtagctggtactgcaggcacacaccatcacatctggctaatttttgtattttttggtagagacggggtttcaccatgttgaccaggctggtctcaaactcctgacctcgagtgatttgcccacctcagcctcccaaagtg
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28308481 143 -  71996105 cgagtagctggtactggaggcacacaccatcacacctggctaatttttgtattttttggtagagacggggtttcaccatgttgaccaggctggtctcaaactcctgacctcgagtgatttgcccacctcagcctctcaaagtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1    1986708 143 +   2316924 cgagtagctggtactgcaggcacacaccatcacacctggctaatttttgtattttttggtagagacggggtttcaccatgttgaccaggctggtctcaaactcctgacctcgagtgatttgcccacctcagcctcccaaagtg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1    1872212 143 -   3067355 cgagtagctggtactgcaggcgcacaccatcacacctagataatttttgtattttttggtagagacggggtttcaccatgttgaccaggctggtctcaaactcctgacctcaagtgatttgcccccctcagcctcccaaagtg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4               235469 143 + 171630274 caagtacctgggacaataggtgtgcaccaccatacccagctaatttttgtattttttggtagagacaggctttcaccatgttgacaaggctggtctcgaactcctgacctcgagtaattggcccaactgagcctcccaaagtg
i calJac3.chr4             T 62542 C 0
s saiBol1.JH378348           154547 143 +    375362 caagcacctgggactacaggtgtgcaccaccatacccagctgatttttgtattttttggtagagatggtgtttgaccatgttgacaaggctgatctcgaactcctgacctcgagtgagtggcccaactgagcctcccaaagtg
i saiBol1.JH378348         C 0 C 0
e dasNov3.JH561790            31406 17264 -    302817 I
e proCoq1.NW_012147953v1     946030 21142 -   3516910 I
e canFam3.chr35            25888253 5065 +  26524999 I
e otoGar3.GL873742          1531788 427 -   2232465 I
e aotNan1.NW_018494050v1     157480  14 -    285216 I
e cebCap1.NW_016108108v1     219999  11 -    373274 I
e cerAty1.NW_012001495v1    1858279 2544 -   2157725 I

a score=758031.000000
s hg38.chr6_GL000254v2_alt   157855 107 +   4827813 gtgATCCTGGGTTTTAACCAGAATAGAGGACATACCACTACCCACTTATTGAACATATTCTAAATAAGTTTTCTTATCCTAA--AATATTTTATATTCCAATATTGgaa
s panTro5.chr6             29139014 107 + 175400573 gtgATCCTGGGTTTTAACCAGAATAGGGGACATACCACTACCCACTTATTGAACATATTCTAAATAAGTTTTCTTATCCTAA--AATATTTTATATTCCAATATTGgaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29373170 107 + 173848474 gtgATCCTGGGTTTTAACCAGAATAGGGGACATACCACTACCCACTTATTGAACATATTCTAAATAAGTTTTCTTATCCTAA--AATATTTTATATTCCAATATTGgaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5173583 107 +   6154872 gtgATCCTGGGTTTTAACCAGAATAGGGGACATAACACTACCCACTTATTGAACATATTCTAAATAAGTTTTCTTATCCTAA--AATATTTTATATTCCAATATTGgaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74174682 107 + 122973662 gtgATCCTGGGTTTTAAGCAGAATAGGGGACATACCACTACCCACTTATTGAACGTATTCTAAATAAGTTTTCTTATCCTAA--AGTATTTTATATTCCAATATTGgaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29349152 107 + 172585720 gtgATCCTGGGTTTTAAGCAGAATAGGGGACATACCACTACCCACTTATTGAACGTATTCTAAATAAGTTTTCTTATCCTAA--ATTATTTTATATTCTAATATTGgaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29010208 107 - 170955103 gtgATCCTGGGTTTTAAGCAGAATAGGGGACATACCACTACCCACTTATTGAACGTATTCTAAATAAGTTTTCTTATCCTAA--ATTATTTTATATTCTAATATTGgaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    1986304 107 -   2996164 gtgATCCTGGGTTTTAAGCAGAATAGGGGACATACCACTACCCACTTATTGAACGTATTCTAAATAAGTTTTCTTATCCTAA--ATTATTTTATATTCTAATATTGgaa
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28308624 107 -  71996105 gtgATCCTGGGTTTTAAGCAGAATAGGGGACATACCACTACCCACTTATTGAACGTATTCTAAATAAGTTTTCTTATCCTAA--ATTATTTTATATTCCAATATTGgaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1    1986851 107 +   2316924 gtgATCCCGGGTTTTAAGCAGAATAGGGGACATACCACTACCCACTTATTGAACGTATTCTAAATAAGTTTTCTTATCCTAA--ATTATTTTATATTCCAATATTGgaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1    1872355 107 -   3067355 gtgATCCTGGCTTTTAAGCAGAATAGGGGACATACCACTACCCACTTATTGAACATATTTTAAATAAGCTTTCTTATCCTAA--ATTATTTTATATTCCAATATTGgaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4               235612 107 + 171630274 gtgATCCTGGGTTTTAAGGAGCATAGGGGACATACCACTACCCACTTACTGAATGTATTCTAAATAAGTTTTCTTAACCACA--TTTTTTTTATATTCCAGTATTGGAA
i calJac3.chr4             C 0 n 0
s saiBol1.JH378348           154690 109 +    375362 gtgATCCTGGGTTTTAAGGAGCATAGGGTACATACCACTACCCACTTACTGAATCTATTCTAAATAAGTTTTCTTAATCAAAATTTTTTTTAATATTCCAGCATTGGAA
i saiBol1.JH378348         C 0 n 0
s otoGar3.GL873742          1532215 103 -   2232465 ATAACCCTGGGTTTTAAACTGAAAAGGAGACATACCACTACTCACTTACTTAACATATTCTAAGTTATGTTTTTT--CCTAA--AATGTTTA--ATTCCAATACTGAAA
i otoGar3.GL873742         I 427 I 4381
e dasNov3.JH561790            31406 17264 -    302817 I
e proCoq1.NW_012147953v1     946030 21142 -   3516910 I
e canFam3.chr35            25888253 5065 +  26524999 I
e aotNan1.NW_018494050v1     157480  14 -    285216 I
e cebCap1.NW_016108108v1     219999  11 -    373274 I
e cerAty1.NW_012001495v1    1858279 2544 -   2157725 I

a score=413520.000000
s hg38.chr6_GL000254v2_alt   157962  90 +   4827813 tcgcctgagtccagggtggtcaaggctgcagtgagctatgattgtgctactgcactccagcctgagtgacagagtgagacc--------------------------------------------------------------ctgtataaa
s panTro5.chr6             29139121  90 + 175400573 tcgcctgagtccagggtggtcaaggctgcagtgagctatgattgtgctactgcactccagcctgagtgacagagtgagacc--------------------------------------------------------------ctgtataaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29373277 152 + 173848474 tcgcctgagtccagggtggtcaaggctgcagtgagctatgattgtgctactgcactccagcctgagtgacagagtgagaccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5173690  90 +   6154872 tcgcctgagtccagggtggtcaaggctgcagtgagctatgattgtgctactgcactccagcctgaatgacagaatgagacc--------------------------------------------------------------ctgtataaa
i gorGor5.CYUI01015250v1   C 0 I 27
s nomLeu3.chr1a            74174789  90 + 122973662 tcgcctgagtccagggtggtcaaggctgcagtgagctatgattgtgctactgcactccagcctgagtgacagagtgagacc--------------------------------------------------------------ctgtataaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29349259  90 + 172585720 tcgtctgagtccagggtggtcaaggctgcagtgagctatgattgtgccactgcattccagcctgagtgacagagtgagacc--------------------------------------------------------------ctgtattaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29010315  90 - 170955103 tcgtctgagtccagggtggtcaaggctgcagtgagctatgattgtgccactgcattccagcctgagtgacagagtgagacc--------------------------------------------------------------ctgtattaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    1986411  90 -   2996164 tcgtctgagtccagggtggtcaaggctgcagtgagctatgattgtgccactgcattccagcctgagtgacagagtgagacc--------------------------------------------------------------ctgtattaa
i macNem1.NW_012011356v1   C 0 I 172
s chlSab2.chr17            28308731  90 -  71996105 tcgtctgagtccagggtggtcaaggctgcagtgagctatgattgtgccactgcattccagcttgagtgacagagtgagacc--------------------------------------------------------------ctgtattaa
i chlSab2.chr17            C 0 I 117
s manLeu1.NW_012104165v1    1986958  90 +   2316924 tcgtctgagtccagggtggtcaaggctgcagtgagctatgattgtgccactgcgttccagcctgagtgacagagtgagacc--------------------------------------------------------------ctgtattaa
i manLeu1.NW_012104165v1   C 0 I 4
s colAng1.NW_012115566v1    1872462  90 -   3067355 tcgtctgagtccagggtggtcaaggctgcagtgagctctgattgtgccactgcactccagcctgagtgacagagtgagacc--------------------------------------------------------------ctgtattaa
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            31406 17264 -    302817 I
e proCoq1.NW_012147953v1     946030 21142 -   3516910 I
e canFam3.chr35            25888253 5065 +  26524999 I
e saiBol1.JH378348           154799   0 +    375362 I
e otoGar3.GL873742          1532318 4381 -   2232465 I
e aotNan1.NW_018494050v1     157480  14 -    285216 I
e cebCap1.NW_016108108v1     219999  11 -    373274 I
e calJac3.chr4               235719   0 + 171630274 I
e cerAty1.NW_012001495v1    1858279 2544 -   2157725 I

a score=35017.000000
s hg38.chr6_GL000254v2_alt   158052 16 +   4827813 aaggaaggaaggaagg
s panTro5.chr6             29139211  4 + 175400573 ------------aagg
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5173807 16 +   6154872 aaggaaggaaggaagg
i gorGor5.CYUI01015250v1   I 27 C 0
s nomLeu3.chr1a            74174879  4 + 122973662 ------------aaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29349349 16 + 172585720 aaaaaagaaaggaagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29010405 16 - 170955103 aaaaaagaaaggaagg
i macFas5.chr4             C 0 I 123
s macNem1.NW_012011356v1    1986673 16 -   2996164 aaggaaggaaggaagg
i macNem1.NW_012011356v1   I 172 C 0
s chlSab2.chr17            28308938 16 -  71996105 aaggaaggaaggaagg
i chlSab2.chr17            I 117 C 0
s manLeu1.NW_012104165v1    1987052 16 +   2316924 aagaaaggaaggaaga
i manLeu1.NW_012104165v1   I 4 C 0
s colAng1.NW_012115566v1    1872552 16 -   3067355 aagaaagaaaggaaga
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            31406 17264 -    302817 I
e proCoq1.NW_012147953v1     946030 21142 -   3516910 I
e canFam3.chr35            25888253 5065 +  26524999 I
e saiBol1.JH378348           154799  0 +    375362 I
e otoGar3.GL873742          1532318 4381 -   2232465 I
e aotNan1.NW_018494050v1     157480 14 -    285216 I
e cebCap1.NW_016108108v1     219999 11 -    373274 I
e calJac3.chr4               235719  0 + 171630274 I
e cerAty1.NW_012001495v1    1858279 2544 -   2157725 I
e panPan2.chr6             29373429  0 + 173848474 C

a score=27858.000000
s hg38.chr6_GL000254v2_alt   158068 7 +   4827813 aaggaag
s panTro5.chr6             29139215 7 + 175400573 aaggaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29373429 4 + 173848474 ---GAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5173823 7 +   6154872 aaggaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74174883 7 + 122973662 aaggaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29349365 7 + 172585720 aagaaag
i rheMac8.chr4             C 0 I 160
s macFas5.chr4             29010544 7 - 170955103 aagaaag
i macFas5.chr4             I 123 C 0
s macNem1.NW_012011356v1    1986689 7 -   2996164 aaggaag
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28308954 7 -  71996105 aaggaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1    1987068 7 +   2316924 aagagag
i manLeu1.NW_012104165v1   C 0 I 14
s colAng1.NW_012115566v1    1872568 7 -   3067355 aagaaag
i colAng1.NW_012115566v1   C 0 I 131
e dasNov3.JH561790            31406 17264 -    302817 I
e proCoq1.NW_012147953v1     946030 21142 -   3516910 I
e canFam3.chr35            25888253 5065 +  26524999 I
e saiBol1.JH378348           154799 0 +    375362 I
e otoGar3.GL873742          1532318 4381 -   2232465 I
e aotNan1.NW_018494050v1     157480 14 -    285216 I
e cebCap1.NW_016108108v1     219999 11 -    373274 I
e calJac3.chr4               235719 0 + 171630274 I
e cerAty1.NW_012001495v1    1858279 2544 -   2157725 I

a score=39947.000000
s hg38.chr6_GL000254v2_alt   158075 17 +   4827813 gaag---gaaggaaggaa---aa
s panTro5.chr6             29139222 17 + 175400573 gaag---gaaggaaggaa---aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29373433 17 + 173848474 GAAG---GAAGGAAGGAA---AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5173830 20 +   6154872 gaaggaagaaggaaggaa---aa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74174890 20 + 122973662 ggag---ggaggcagggagggag
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29010551 16 - 170955103 -aaa---gaaagaaagag---aa
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    1986696 16 -   2996164 -gaa---gaaagaaagag---aa
i macNem1.NW_012011356v1   C 0 I 1
s chlSab2.chr17            28308961 17 -  71996105 gaag---gaaggaaggaa---gg
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012104165v1    1987089 17 +   2316924 gaaa---gagggaaagaa---ag
i manLeu1.NW_012104165v1   I 14 I 92
s colAng1.NW_012115566v1    1872706 17 -   3067355 gaag---gaaggaaggaa---gg
i colAng1.NW_012115566v1   I 131 C 0
e dasNov3.JH561790            31406 17264 -    302817 I
e proCoq1.NW_012147953v1     946030 21142 -   3516910 I
e canFam3.chr35            25888253 5065 +  26524999 I
e saiBol1.JH378348           154799  0 +    375362 I
e otoGar3.GL873742          1532318 4381 -   2232465 I
e aotNan1.NW_018494050v1     157480 14 -    285216 I
e cebCap1.NW_016108108v1     219999 11 -    373274 I
e calJac3.chr4               235719  0 + 171630274 I
e cerAty1.NW_012001495v1    1858279 2544 -   2157725 I
e rheMac8.chr4             29349372 160 + 172585720 I

a score=47283.000000
s hg38.chr6_GL000254v2_alt   158092 28 +   4827813 gaaaaaaaaTTatagaaaatagattgtc
s panTro5.chr6             29139239 28 + 175400573 gaaaaaaaaTTatagaaaatagattgtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29373450 28 + 173848474 GAAAAAAAATTatagaaaatagattgtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5173850 28 +   6154872 gaaaaaaaatgatagaaaatagattgtc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74174910 28 + 122973662 ggaAAAAAATgatagaaaatagattgtc
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29010568 20 - 170955103 gaaaaaaaacgatagaaaat--------
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    1986713 20 -   2996164 gaaaaaaaacgatagaaaat--------
i macNem1.NW_012011356v1   I 1 C 0
s chlSab2.chr17            28308980 15 -  71996105 -----ggaaggaaagaaaAt--------
i chlSab2.chr17            I 2 C 0
s colAng1.NW_012115566v1    1872723 28 -   3067355 aGAAAAAAATgatagaaaatagatagtc
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            31406 17264 -    302817 I
e proCoq1.NW_012147953v1     946030 21142 -   3516910 I
e canFam3.chr35            25888253 5065 +  26524999 I
e saiBol1.JH378348           154799  0 +    375362 I
e otoGar3.GL873742          1532318 4381 -   2232465 I
e aotNan1.NW_018494050v1     157480 14 -    285216 I
e cebCap1.NW_016108108v1     219999 11 -    373274 I
e calJac3.chr4               235719  0 + 171630274 I
e manLeu1.NW_012104165v1    1987106 92 +   2316924 I
e cerAty1.NW_012001495v1    1858279 2544 -   2157725 I
e rheMac8.chr4             29349372 160 + 172585720 I

a score=442984.000000
s hg38.chr6_GL000254v2_alt   158120  97 +   4827813 ggttgcctgcaggtt-gggggaggctgagagatggggagtgactgctaaggag-------tatttttttttaccttgaggtgataaaaatgttctaacactgatg
s panTro5.chr6             29139267  97 + 175400573 ggttgcctgcaggtt-gggggaggctgagagatggggagtgactgctaaggag-------tatttttttttaccttgaggtgataaaaatgttctaacactgatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29373478  97 + 173848474 ggttgcctgcaggtt-gggggaggctgagagatggggagtgactgctaaggag-------tatttttttttaccttgaggtgataaaaatgttctaacactgatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5173878  98 +   6154872 ggttgcctgcaggttggggggaggctgaaagatggggagtgactgctaaggag-------tatttttttttaccttgaggtgataaaaatgttctaacactgatg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74174938  97 + 122973662 agttgcctgcaggtt-gggggaggttgggaggtggggagtgactgccaaggag-------tacttttttttaccttgaggtgataaaaatgttctaacactgatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29349532 100 + 172585720 ggttgcctgcaggtt-gggggaggttgggagatagggagtgactgctaaggag----ttttttttttttttactttgaggtgataaaaatgttctaactctgatg
i rheMac8.chr4             I 160 C 0
s macFas5.chr4             29010588 100 - 170955103 ggttgcctgcaggtt-gggggaggttgggagatagggagtgactgctaaggag----ttttttttttttttactttgaggtgataaaaatgttctaactctgatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    1986733 100 -   2996164 ggttgcctgcaggtt-gggggaggttgggagatagggagtgactgctaaggag----ttttttttttttttactttgaggtgataaaaatgttctaactctgatg
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28308995 104 -  71996105 ggttgcctgcaggtt-gggggaggttgggagatacagagtgactgctaaggagtattttttttttttttttactttgaggtgataaaaatgttctaactctgatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1    1987198 100 +   2316924 ggttgcctgcaggtt-gggggaggttgggagatagggagtgactgctaagaag----ttttttttttttttactttgaggtgataaaaatgttctaactctgatg
i manLeu1.NW_012104165v1   I 92 C 0
s colAng1.NW_012115566v1    1872751  98 -   3067355 ggttgcctgcaggtt-gggggaggttgggagatggagagtgactgctaaggag------tattttttttttactttgagatgataaaaatgttctaactctgatg
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            31406 17264 -    302817 I
e proCoq1.NW_012147953v1     946030 21142 -   3516910 I
e canFam3.chr35            25888253 5065 +  26524999 I
e saiBol1.JH378348           154799   0 +    375362 I
e otoGar3.GL873742          1532318 4381 -   2232465 I
e aotNan1.NW_018494050v1     157480  14 -    285216 I
e cebCap1.NW_016108108v1     219999  11 -    373274 I
e calJac3.chr4               235719   0 + 171630274 I
e cerAty1.NW_012001495v1    1858279 2544 -   2157725 I

a score=269345.000000
s hg38.chr6_GL000254v2_alt   158217 53 +   4827813 gtgataatgtttgcacaactctgaatattctaaaagtgattgaattgaattga
s panTro5.chr6             29139364 53 + 175400573 gtgataatgtttgcacaactctgaatattctaaaagtgattgaattgaattga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29373575 53 + 173848474 gtgataatgtttgcacaactctgaatattctaaaagtgattgaattgaattga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5173976 53 +   6154872 gtgataatgtttgcacaactctgaatattctaaaagtgattgaattgaattga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74175035 53 + 122973662 gtgataatgtttgcacaactctgaatattctaaaagtgattgaattgaattga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29349632 48 + 172585720 gtgataatgtttgtacaactctgaatattgtaaaagtg-----attgaattga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29010688 48 - 170955103 gtgataatgtttgtacaactctgaatattgtaaaagtg-----attgaattga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    1986833 48 -   2996164 gtgataatgtttgtacaactctgaatattgtaaaagtg-----attgaattga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1    1860823 48 -   2157725 gtgataatgtttgtacaactctgaatattgtaaaagtg-----attgaattga
i cerAty1.NW_012001495v1   I 2544 C 0
s chlSab2.chr17            28309099 48 -  71996105 gtgataatgtttgtacaactctgaatattgtaaaagtg-----attgaattga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1    1987298 48 +   2316924 gtgataatgtttgtacaactctgaatattgtaaaagtg-----attgaattga
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1    1872849 48 -   3067355 gtgataatgtttgtacaactctgaatattgtaaaagtg-----attgaattga
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            31406 17264 -    302817 I
e proCoq1.NW_012147953v1     946030 21142 -   3516910 I
e canFam3.chr35            25888253 5065 +  26524999 I
e saiBol1.JH378348           154799  0 +    375362 I
e otoGar3.GL873742          1532318 4381 -   2232465 I
e aotNan1.NW_018494050v1     157480 14 -    285216 I
e cebCap1.NW_016108108v1     219999 11 -    373274 I
e calJac3.chr4               235719  0 + 171630274 I

a score=1802821.000000
s hg38.chr6_GL000254v2_alt   158270 291 +   4827813 atggtgtgtaaattatatctcaataaagctggtaaaaaTTTAGTGATTCAATAAAATCCTTTATTTGGTCAATGTACGG-TATTCTGT---CAGTTGAGACAAAAGTTAACATTCGAATTTAGATTTAGATT----TTATATCTTCAGCTTCTTCTATCT----AGAAAAGGCATTCACTAGTAATTATTAGGATGATTGTGCATTGTTATGTACAGATAACCGCAGTGAC--TTATCTGATAGTCCTTTAACA--GACAGGAGTACTAGTGTAGTTACTTTGTTTTTATGTAACTAGGTAGGTCTT
s panTro5.chr6             29139417 295 + 175400573 atggtgtgtaaattatatctcaataaagctggtaaaaaTTTAGTGATTCAATAAAATCCTTTATTTGGGCAATGTACGG-TATTCTGT---CAGTTGAGACAAAAGTTAACATTCGAATTTAGATTTAGATT----TTATATCTTCAGCTTCTTCTATCTAGAAAGAAAAGGCATTCACTAGTAATTATTAGGATGATTGTTCATTGTTATGTACAGATAACCGCAGTGAC--TTATCTGATAGTCTTTTAACA--GACAGGAGTACTAGTGTAGTTACTTTGTTTTTATGTAACTAGGTAGGTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29373628 295 + 173848474 atggtgtgtaaattatatctcaataaagctggtaaaaaTTTAGTGATTCAATAAAATCCTTTATTTGGGCAATGTACGG-TATTCTGT---CAGTTGAGACAAAAGTTAACATTTGAATTTAGATTTAGATT----TTATATCTTCAGCTTCTTCTATCTAGAAAGAAAAGGCATTCACTAGTAATTATTAGGATGATTGTTCATTGTTATGTACAGATAACCGCAGTGAC--TTATCTGATAGTCCTTTAACA--GACAGGAGTACTAGTGTAGTTACTTTGTTTTTATGTAACTAGGTAGGTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5174029 295 +   6154872 atggtgtgtaaattatatctcaataaagctggtaaaaaTTTAGTGATTCAATAAAATCCTTTATTTGGTCAATGTACGG-TATTCTGT---CAGTTGAGACAAAAGTTAACATTCGAATTTAGATTTAGATT----TTATATCTTCAGCTTCTTCTATCTAGAAAGAAAAGGCATTCACTAGTAATTATTAGGATGATTGCTCATTGTTATGTACAGATAACCGCAGTGAC--TTATCTGATAGTCCTTTAACA--GACAGGAGTACTAGTGTAGTTACTTTGTTTTTATGTAACTAGGTAGGTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74175088 290 + 122973662 atggtgtgtaaattatatctcaataaagctggtaaaaaTTTAGTGATTCAATAAAATCCTTTATTTGGTCAATGTACAG-TATTCTGT---CAGTTGAGACAAAAGTT-ACATTCTAATTTAGCTTTAGATT----TTGTATCTTCCG---CTTCTATCTAGAAAGAAAAGGCAATCACTACTAATTATAAGGATGATTGTTCATTGTTATGTACAGATAACCTCAGTGAC--TTATCTGATAGTCCTTTAACA---ACAGGAGTACTAGTGTAGTTACTTTGTTTTTATGTAACTAGGTAGGTCTT
i nomLeu3.chr1a            C 0 I 1669
s rheMac8.chr4             29349680 291 + 172585720 atggtgtgtaaattatatctcaataaagctggtaaaaaTTTAGTGATTCAATAAAATCCCTTATTTGTTCAATGTACAG-TATTCTGT---CAGTTGAGACAAAAGTT-ACATTCGAATTTAGATTTAGATT----TTATATCTTCAG---CTTCAATCTAGAAAGAAAAGGCATTCACTAGTAATTATTAGGATGATTGTTCATTGTTATGTACACATAACTTCAGTGAC--TCATCTGATAGTCCTTTAACA--GACAGGAGTACTAGTGTAGTTACTATGTTTTTATGTAACCAGGTAGGTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29010736 291 - 170955103 atggtgtgtaaattatatctcaataaagctggtaaaaaTTTAGTGATTCAATAAAATCCCTTATTTGTTCAATGTACAG-TATTCTGT---CAGTTGAGACAAAAGTT-ACATTCGAATTTAGATTTAGATT----TTATATCTTCAG---CTTCTATCTAGAAAGAAAAGGCATTCACTAGTAATTATTAGGATGATTGTTCATTGTTATGTACACATAACTTCAGTGAC--TCATCTGATAGTCCTTTAACA--GACAGGAGTACTAGTGTAGTTACTATGTTTTTATGTAACCAGGTAGGTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    1986881 291 -   2996164 atggtgtgtaaattatatctcaataaagctggtaaaaaTTTAGTGATTCAATAAAATCCCTTATTTGTTCAATGTACAG-TATTCTGT---CAGTTGAGACAAAAGTT-ACATTCGAATTTAGATTTAGATT----TTATATCTTCAG---CTTCTATCTAGAAAGAAAAGGCATTCACTAGTAATTATTAGGATGATTGTTCATTGTTATGTACACATAACTTCAGTGAC--TCATCTGATAGTCCTTTAACG--GACAGGAGTACTAGTGTAGTTACTTTGTTTTTATGTAACCAGGTAGGTCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1    1860871 291 -   2157725 atggtgtgtaaattatatctcaataaagctggtaaaaaTTTAGTGATTCAATAAAATCCCTTATTTGTTCAATGTACAG-TATTCTGT---CAGTTGAGACAAAAGTT-ACATTCGAATTTAGATTTAGATT----TTATATCTTCAG---CTTCTATCTAGAAAGAAAAGGCATTCACTAGTAATTATTAGGATGATTGTTCATTGTTATGTACACATAACTTCAGTGAC--TCATCTGATAGTCCTTTAACA--GACAGGAGTACTAGTGTAGTTACTTTGTTTTTATGTAACCAGGTAGGTCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17            28309147 291 -  71996105 atggtgagtaaattatatctcaataaagctggtaaaaTTTTAGTGATTCAATAAAATCCCTTATTTGATCAATGTACAG-TATTCTGT---CAGTTGAGACAAAAGTT-ACATTCGAATTTAGATTTAGATT----TTATATCTTCAG---CTTCTATCTAGAAAGAAAAGGCATTCACTAGTAATTATTAGGATGATTGTTCATTGTTATGTACACATAACTTCAGTGAC--TCATCTGATAGTCCTTTAACT--GACAGGAGTACTAGTGTAGTTACTTTGTTTTTATGTAACCAGGTAGGTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1    1987346 291 +   2316924 atggtgtgtaaattatatctcaataaagctggtaaaaaTTTAGTGATTCAATAAAATCCTTTATTTGTTCAATATACAG-TATTCTGT---CAGTTGAGACAAAAGTT-ACATTCGAATTTAGATTTAGATT----TTATATCTTCAG---CTTCTATCTAGAAAGAAAAGGCATTCACTAGTAATTATTAGGATGATTGTTCATTGTTATGTACACATAACTTCAGTGAC--TCATCTGATAGTCCTTTAACA--GACAGGAGTACTAGTGTAGTTACTTTGTTTTTATGTAACCAGGTAGGTCTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1    1872897 291 -   3067355 atggtgtgtaaattgtatctcaataaagctggtaaaaaTTTAGTGATTCAATAAAATCCTTTATTTGATCAATGTACAG-TATTCTGT---CAGTTGAGACAAAAGTT-ACATTCGAATTTAGATTTAGATT----TTATATCTTCAG---CTTCTATCTAGAAAGAAAAGGCATTCACTAGTAATTATTAGGATGATTGTTCATTGTTGTGTACACATAACCTCAGTGAC--TTATCTGATAGTCCTTTGACA--GACAGGAGTACTAGTGTAGTTACTTTGTTTTTATGTAACCAGGTAGGTCTT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           699700 281 +   2232465 ATAGTATGTAAATTATATCTCAATAAAGCTGACAAAACATTAATGATAGAATAAGAGTCATTA-TTGGTCAATGTACAGTTATTCTATGTACAGTTGTGACAGAAGTT-CTCTTAGAATTTAGACTTCTGCCTGGGTTATATCTTTGGCTTGTTCTATCTAGGAATAAAAAGCATTTACTAGTAATTATTAAGGTG-------ATTCTTATGTACAGATAACCTCGGTGGCTTTTATTTGGTAGTACTTTCACATAGATAGGGTTACTAGCCTAGTTACCTTATTTTCAT-----------------
i otoGar3.GL873742         n 4381 C 0
e dasNov3.JH561790            31406 17264 -    302817 I
e proCoq1.NW_012147953v1     946030 21142 -   3516910 I
e canFam3.chr35            25888253 5065 +  26524999 I
e saiBol1.JH378348           154799   0 +    375362 I
e aotNan1.NW_018494050v1     157480  14 -    285216 I
e cebCap1.NW_016108108v1     219999  11 -    373274 I
e calJac3.chr4               235719   0 + 171630274 I

a score=882212.000000
s hg38.chr6_GL000254v2_alt   158561 158 +   4827813 ATGTAATGTCTTATTTGTCTGAATGAAAGATTATTGTGTCTTTAGCAGAGGAAAAGAGATAATCTCTCCGCAC-TGAAGATTATTTTAATGAG-TAGTAT-AA---GTAATGATATACACAAAATGGG-AAATTAT-------CTTGGCC--TTAATGAACCATGTATTCTACA
s panTro5.chr6             29139712 158 + 175400573 ATGTAATGTCTTATTTGTCTGAATGAAAGATTATTGTGTCTTTAGCAGAGGAAAAGAGATAATCTCTCCGCAC-TGAAGATTATTTTAATGAG-TAGTAT-AA---GTAATGATATACACAAAATGGG-AAATTAT-------CTTGGCC--TTAATGAACCATGTATTCTACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29373923 158 + 173848474 ATGTAATGTCTTATTTGTCTGAATGAAAGATTATTGTGTCTTTAGCAGAGGAAAAGAGATAATCTCTCCGCAT-TGAAGATTATTTTAATGAG-TAGTAT-AA---GTAATGATATACACAAAATGGG-AAATTAT-------CTTGGCC--TTAATGAACCATGTATTCTACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5174324 158 +   6154872 ATGTAATGTCTTATTTGTCTGAATGAAAGATTATTGTGTCTTTAGCAGAGGAAAAGAGATAATCTCTCCGCAC-TGAAGATTATTTTAATGAG-TAGTAT-AA---GTAATGATATACACAAAATGGG-AAATTAT-------CTTGGCC--TTAATGAACCATGTATTCTACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74177047 156 + 122973662 ACATAATGTCTTATTTGTCTGAATGAAAGATTATTGAGTCTTTAGCAGAGG--AAGAGATAATCTCTCTGCAC-TGAAGATTATTTTAATGAG-TAGTGT-AA---GTAATGATATACACAATATGGG-ATATTAT-------CTTGGCC--TTAATGAACCTTGTATTCTATA
i nomLeu3.chr1a            I 1669 C 0
s rheMac8.chr4             29349971 157 + 172585720 ATGTTATATCTTATTTGTCTGAATGAAAGATTATTGAGTCTTTAGCAGGGGAAAAGAGATAA--TCTCTGCAC-TGAAGATTATTTTAATGAG-TGGTATCAA---GTAATGATATACACAAAATGGG-AAATAAT-------CTTGGCC--TTAATGAACCATGTATTCTATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29011027 157 - 170955103 ATGTTATATCTTATTTGTCTGAATGAAAGATTATTGAGTCTTTAGCAGGGGAAAAGAGATAA--TCTCTGCAC-TGAAGATTATTTTAATGAG-TGGTATCAA---GTAATGATATACACAAAATGGG-AAATAAT-------CTTGGCC--TTAATGAACCATGTATTCTATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    1987172 157 -   2996164 ATGTTATATCTTATTTGTCTGAATGAAAGATTATTGAGTCTTTAGCAGGGGAAAAGAGATAA--TCTCTGCAC-TGAAGATTATTTTAATGAG-TGGTATCAA---GTAATGATATACACAAAATGGG-AAATAAT-------CTTGGCC--TTAATGAACCATGTATTCTATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1    1861162 165 -   2157725 ATGTTATATCTTATTTGTCTGAATGAAAGATTATTGAGTCTTTAGCAGGGGACAGGAGATAA-CTCTTCGCACATGAAGATTATTTTAATGAG-TGGTATCAAAGCATAATGACATACACAAAATGGGAAAATCAT-------CTTGGCCCGTGAATGAACCATCGTATCTATA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17            28309438 157 -  71996105 ATGTTATGTCTTATTTGTCTGAATGAAAGATTATTGAGTCTTTGGCAGGGGAAAAGAGATAA--TCTCTGCAC-TGAAGATTATTTTAATGAG-TAGTATCAA---GTAATGATATACACAAAATGGG-AAATAAT-------CTTGGCC--TTAATGAACCATGTATTCTATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1    1987637 157 +   2316924 ATGTTATATCTTATTTGTCTGAATGAAAGATTATTGAGTCTTTAGCAGGGGAAAAGAGATAA--TCTCTGCAC-TGAAGATTATTTTAATGAG-TGGTATCAA---GTAATGATATACACAAAATGGG-AAATAAT-------CTTGGCC--TTAATGAACCATGTATTCTATA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1    1873188 157 -   3067355 ATGTTATGTCTTATTTGTCTGAATGAAAGATTATTGAGTCTTTAGCAGGGAAAAAGAGATAA--TCTCTGCAC-TGAAGATTATTTTAATGAG-TAGTATCAA---GTAATGATATACACAAAATGGG-AAATAAT-------CTTGGCC--TCAATGAACCATGTATTCTATG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           699981 158 +   2232465 AAGTGCTGCGTGGCTTATTTGAAGGAAAGATGTTAAGTCCTTTAGCAGAGGATAAGAGATAATCTCTCTACCT-TCAGGGTTATTTTAATGAATTAGTACTGG---GTAATGACATGACCAAAATGAG-AAATAGTTAATTTATTTGGTC--TTATTAAACTATG---------
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            31406 17264 -    302817 I
e proCoq1.NW_012147953v1     946030 21142 -   3516910 I
e canFam3.chr35            25888253 5065 +  26524999 I
e saiBol1.JH378348           154799   0 +    375362 I
e aotNan1.NW_018494050v1     157480  14 -    285216 I
e cebCap1.NW_016108108v1     219999  11 -    373274 I
e calJac3.chr4               235719   0 + 171630274 I

a score=20314.000000
s hg38.chr6_GL000254v2_alt    158719 3 +   4827813 TAT
s panTro5.chr6              29139870 3 + 175400573 TAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29374081 3 + 173848474 TAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5174482 3 +   6154872 TAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74177203 3 + 122973662 TAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29350128 3 + 172585720 TGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29011184 3 - 170955103 TGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1987329 3 -   2996164 TGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1861327 3 -   2157725 TGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28309595 3 -  71996105 TGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1987794 3 +   2316924 TGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1873345 3 -   3067355 TGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171394517 3 - 171630274 TAT
i calJac3.chr4             I 4 C 0
s saiBol1.JH378348            220520 3 -    375362 TAT
i saiBol1.JH378348         I 1472 C 0
s cebCap1.NW_016108108v1      220010 3 -    373274 TAT
i cebCap1.NW_016108108v1   I 11 C 0
e dasNov3.JH561790             31406 17264 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888253 5065 +  26524999 I
e otoGar3.GL873742            700139 0 +   2232465 C
e aotNan1.NW_018494050v1      157480 14 -    285216 I

a score=338529.000000
s hg38.chr6_GL000254v2_alt    158722 41 +   4827813 A----GAGTATA-GAATACA-----TGGCTT-CTGTAAATAAAAGTTTCCAG
s panTro5.chr6              29139873 41 + 175400573 A----GAATATA-GAATACA-----TGGCTT-CTGTAAATAAAAGTTTCCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29374084 41 + 173848474 A----GAATATA-GAATACA-----TGGCTT-CTGTAAATAAAAGTTTCCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5174485 41 +   6154872 A----TAATATA-TAATACA-----TGGCTT-CTGTGAATAAAAGTTTCCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74177206 41 + 122973662 A----GAATATA-GAATACG-----TGGCTT-CTGTAAATAAAAGTTTCCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29350131 41 + 172585720 A----GAATATA-GAATACA-----TGGCTT-CTGTAAACAAAAGTTTCCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29011187 41 - 170955103 A----GAATATA-GAATACA-----TGGCTT-CTGTAAACAAAAGTTTCCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1987332 41 -   2996164 A----GAATATA-GAATACA-----TGGCTT-CTGTAAACAAAAGTTTCCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1861330 48 -   2157725 AGGCGGAATATACGAATACAC----TGGCTTCCTGTAAACAAAAGTTTCCAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28309598 41 -  71996105 A----GAATATA-GAATACA-----TGGCTT-CTGTAAACAAAAGTTTCCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1987797 41 +   2316924 A----GAATACA-GAATACA-----TGGCTT-CTGTAAACAAAAGTTTCCAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1873348 41 -   3067355 A----GAATATA-GAATACA-----TGACTT-CTGTAAACAAAAGTTTCCAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171394520 41 - 171630274 A----GAATATA-GAATACA-----TGACTT-CTGTAGATAAAACTTTCCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            220523 46 -    375362 A----GAATATA-GAATACACGACTTGACTT-CTGTAGAAAATACTTTCCAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      220013 41 -    373274 A----GAATATA-GAATACA-----TGACTT-CTGTAGATAAAACTTTCCAg
i cebCap1.NW_016108108v1   C 0 I 336
s aotNan1.NW_018494050v1      157494 41 -    285216 A----GAATATA-GAATACA-----TGACTT-CTGTAGATAAAACTTTCCAG
i aotNan1.NW_018494050v1   I 14 C 0
s otoGar3.GL873742            700139 14 +   2232465 --------------------------------------ATAAAGGCTTTCAG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             31406 17264 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888253 5065 +  26524999 I

a score=192586.000000
s hg38.chr6_GL000254v2_alt    158763 28 +   4827813 TATTGGAATAT--AAAAAAATTTAG-GATAA
s panTro5.chr6              29139914 28 + 175400573 TATTGGAATAT--AAAAAAATTTAG-GATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29374125 27 + 173848474 TATTGGAATAT---AAAAAATTTAG-GATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5174526 28 +   6154872 TTTTGGAATAT--AAAAAAATTTAG-GATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74177247 28 + 122973662 TATTGGAATAT--AAAAATATTTAG-GATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29350172 28 + 172585720 TATTGGAATAT--AAAAAAATTTAG-GAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29011228 28 - 170955103 TATTGGAATAT--AAAAAAATTTAG-GAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1987373 28 -   2996164 CATTGGAATAT--AAAAAAATTTAG-GAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1861378 29 -   2157725 ATTTGGAATAT--AAAAAAATTTAGCGAAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28309639 28 -  71996105 TATTGGAATAT--AAAAAAATTTAG-GAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1987838 28 +   2316924 TATTGGAATAT--AAAAAAATTTAG-GAAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1873389 28 -   3067355 TATTGGAATAT--AAAAAAAATTAG-GAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171394561 28 - 171630274 TACTGGAATAT--AAAAAAAATGTG-GTTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            220569 30 -    375362 TGCTGGAATATTAAAAAAAATTTTG-ATTAA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      157535 30 -    285216 TATTGGAATATAAAAAAAAATTTTG-GTTCA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742            700153 24 +   2232465 TATTGGAAT----TAAACATTTTAG-GAA--
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             31406 17264 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888253 5065 +  26524999 I
e cebCap1.NW_016108108v1      220054 336 -    373274 I

a score=744733.000000
s hg38.chr6_GL000254v2_alt    158791 72 +   4827813 GA-AAACTTATTTA---GAATACATTCGATAAGTG-GGTAGT-GGTATGTCCCCTATTCTGCTTAAAACCCA-GGATca
s panTro5.chr6              29139942 72 + 175400573 GA-AAACTTATTTA---GAATACATTCGATAAGTG-GGTAGT-GGTATGTCCCCTATTCTGCTTAAAACCCA-GGATca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29374152 72 + 173848474 GA-AAACTTATTTA---GAATACATTCGATAAGTG-GGTAGT-GGTATGTCCCCTATTCTGCTTAAAACCCA-GGATca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5174554 72 +   6154872 GA-AAACTTATTTA---GAATACATTCGATAAGTG-GGTAGT-GGTATGTCCCCTATTCTGCTTAAAACCCA-GGATca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74177275 72 + 122973662 GA-AAACTTATTTA---GAATACATTCGATAAGTG-GGTAGT-GGTATGTCTCCTCTTCTGCTTAAAACCCA-GGATca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29350200 72 + 172585720 GA-AAGCTTATTTA---GAATACATTCGATGAGAG-AGTAGT-GGTATGTCCCCTATTCTGCTTAAAACCCA-GGATca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29011256 72 - 170955103 GA-AAGCTTATTTA---GAATACATTCGATGAGAG-AGTAGT-GGTATGTCCCCTATTCTGCTTAAAACCCA-GGATca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1987401 72 -   2996164 GA-AAGCTTATTTA---GAATACATTCGATGAGAG-AGTAGT-GGTATGTCCCCTATTCTGCTTAAAACCCA-GGATca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1861407 79 -   2157725 GAGAAACTTATTTACCGCAATACATTCGATGAGCGCAGTAGTGGGTATGTCCCCTATTCTGCTTAAAACCCACGGATca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28309667 72 -  71996105 GA-AAACTTATTTA---GAATACATTCGATGAGAG-AGTAGT-GGTATGTCCCCTATTCTGCTTAAAACCCA-GGATca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1987866 72 +   2316924 GA-AAACTTATTTA---GAATACATTCGATGAGAG-AGTAGT-GGTATGTCCCCTATTCTGCTTAAAACCCA-GGGTca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1873417 72 -   3067355 GA-AAACTTATTTA---GAATACATTCGATGAGAG-GGTAGT-GGTATGTCCCCTATTCTGCTTAAAACCCA-GGATca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171394589 72 - 171630274 GA-AAACTTATTTA---GAATACATTCAGTAAGTG-GGTAGT-GGTATGTCCCCTATGCTCCTTAAAACCCA-GGATca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            220599 72 -    375362 GA-AAACTTATTTA---GAATAGATTCAGTAAGTG-GGTAGT-GGTATGTACCCTATGCTCCTTAAAACCCA-GGATca
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      220390 72 -    373274 GA-AAACTTATTTA---GAATAGATTCAGTAAGTG-GGTAGT-GGTATGTCCCCAGTGCTCCTTAAAACCCA-GGATca
i cebCap1.NW_016108108v1   I 336 C 0
s aotNan1.NW_018494050v1      157565 72 -    285216 GA-AAACTTATTTA---GAATACATTGAGTAAGTG-GGTAGT-GCTATGTCCCCTATGCTCCTTAAAACCCA-GGATCA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742            700177 72 +   2232465 AA-AACATAACTTA---GAATATGTTAAGTAAGTG-AGTAGT-GGTATGTCTCCTTTTCAGTTTAAAACCCA-GGGTTA
i otoGar3.GL873742         C 0 n 0
e dasNov3.JH561790             31406 17264 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888253 5065 +  26524999 I

a score=575761.000000
s hg38.chr6_GL000254v2_alt    158863 65 +   4827813 ccactttggg-aggctgaggtgggcgaatcactcaaggtcagg-agttcgagaccagcctcgtcaac
s panTro5.chr6              29140014 65 + 175400573 ccaatttggg-aggctgaggtgggcgaatcactcgaggtcagg-agttcgagaccagcctcgtcaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29374224 65 + 173848474 ccactttggg-aggctgaggtgggcgaatcactcgaggtcagg-agttcaagaccagcctcgtcaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5174626 65 +   6154872 ccattttggg-aggctgaggtgggcgaatcactcgaggtcagg-agttcgagaccagcctcatcaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74177347 65 + 122973662 ccacgttggg-aggctgaggtgagcaaatcactcgaggtcagg-agttcgagaccagcatggccaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29350272 64 + 172585720 ccactttggg-aggctga-gtgggcgaatcactcaaggttagg-agttcgagaccagcctggtcaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29011328 64 - 170955103 ccactttggg-aggctga-gtgggcgaatcactcaaggttagg-agttcgagaccagcctggtcaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1987473 64 -   2996164 ccactttggg-aggctga-gtgggcgaatcactcaaggttagg-agttcgagaccagcctggtcaac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1861486 65 -   2157725 accctttgggcaggctga-gt-ggcgaatccctcaaggttaggaagttcgagaccagcctggtcaac
i cerAty1.NW_012001495v1   C 0 I 570
s chlSab2.chr17             28309739 64 -  71996105 ccactttggg-aggctga-gtgggcgaatcactcaaggttagg-agttcgagaccagcctggtcaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1987938 64 +   2316924 ccactttggg-aggctga-gtgggcgaatcactcaaggttagg-agttcgagaccagcctggtcaac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1873489 64 -   3067355 tcactctggg-aggctca-gtgggtgaatcactcgaggtcagg-agttcgagaccagcctggtcaac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171394661 65 - 171630274 ccactttggg-aggctcagttgggccaattactcgaggtcagg-agttcgagaccagccttgtcaac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            220671 65 -    375362 ccactttggg-aggctcagttgggccactcactcgaggtcagg-agttcgagatcagccttgtcaac
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      220462 65 -    373274 ccactttggg-agactcagttgggccaatcactcgaggtcagg-agttcgagaccagccttgtcaac
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      157637 63 -    285216 CTactttggg-aggct--gttgggccaatcactcgaggtcagg-agttcgagaccagccttgtcaac
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             31406 17264 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888253 5065 +  26524999 I
e otoGar3.GL873742            700249  0 +   2232465 I

a score=622406.000000
s hg38.chr6_GL000254v2_alt    158928 74 +   4827813 atggtgaaa-ccctgtctctactaaaaaatataaaaattagccaggtgtggtggtgcacgcttgtagtcccagct
s panTro5.chr6              29140079 74 + 175400573 atggtgaaa-ccctgtctctactaaaaaatataaaaattagccaggtgtggtggtgcacgcttgtagtcccagct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29374289 74 + 173848474 atggtgaaa-ccctgtctctactaaaaaatataaaaattagccaggtgtggtggtgcacgcttgtagtcccagct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5174691 74 +   6154872 atggtgaaa-ccctgtctctactaaaatatataaaaattagccaggtgtggtggtgcacgcttgtagtcccagct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74177412 74 + 122973662 atggtgaaa-ccctgtctctactaaaaaatataaaaattagccaggtgtggtggtgcatgcctgtagtcccagct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29350336 74 + 172585720 atgatgaaa-ccccatctctaccaaaaaatacaaaaattagccaggtgtggtggtgcgcgcctgtagtcccagct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29011392 74 - 170955103 atgatgaaa-ccccatctctaccaaaaaatacaaaaattagccaggtgtggtggtgcgcgcctgtagtcccagct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1987537 75 -   2996164 atgatgaaacccccatctctaccaaaaaatacaaaaattagccaggtgtggtggtgcgtgcctgtagtcccagct
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28309803 74 -  71996105 atgatgaaa-ccccatgtctaccaaaaaatacaaaaattagccaggtgtggtggtgcgcgcctgtagtcccagct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1988002 74 +   2316924 atgatgaaa-ccccatctctaccaaaaaatacaaaaattagccaggtgtggtggtgcgcgcctgtagtcccagct
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1873553 74 -   3067355 atgatgaaa-ccccgtctctacccaaaaatacaaaaattagccaggtgtggtggtgcgtgcctgtagtcccagct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171394726 74 - 171630274 atggtgaaa-gcctgtctctaccaaaaaatacaaaaattagctgggtatggtggtgcacacctattgtcccaggt
i calJac3.chr4             C 0 I 651
s saiBol1.JH378348            220736 74 -    375362 atggtcaaa-caccatctctaccaaaaaatacaaaaatcagctgggtatggtggtgcacacctgtagtcccaggt
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      220527 74 -    373274 atggtgaaa-ccccgtctctaccaaaaaatacaaaaattagctgggtatggtggtgcacacctatagtcccaggt
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      157700 74 -    285216 atggtgaaa-ccctgtctctaccaaaaaatacaaaaattagctgggtatggtggtgcacacctatagtcccaggt
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             31406 17264 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888253 5065 +  26524999 I
e otoGar3.GL873742            700249  0 +   2232465 I
e cerAty1.NW_012001495v1     1861551 570 -   2157725 I

a score=55041.000000
s hg38.chr6_GL000254v2_alt    159002 7 +   4827813 actcggg
s panTro5.chr6              29140153 7 + 175400573 actcggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29374363 7 + 173848474 actcggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5174765 7 +   6154872 actcggg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74177486 7 + 122973662 actcggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29350410 7 + 172585720 attcggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29011466 7 - 170955103 attcggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1987612 7 -   2996164 attcggg
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28309877 7 -  71996105 attcggg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1988076 7 +   2316924 attcggg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1873627 7 -   3067355 attcggg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171395451 7 - 171630274 acttgga
i calJac3.chr4             I 651 C 0
s saiBol1.JH378348            220810 7 -    375362 gcttggg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      220601 7 -    373274 acttggg
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      157774 7 -    285216 acttggg
i aotNan1.NW_018494050v1   C 0 I 1287
e dasNov3.JH561790             31406 17264 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888253 5065 +  26524999 I
e otoGar3.GL873742            700249 0 +   2232465 I
e cerAty1.NW_012001495v1     1861551 570 -   2157725 I

a score=898246.000000
s hg38.chr6_GL000254v2_alt    159009 151 +   4827813 agtctgaggcaggagaatcctttgaacctgcgaggcagtggttgcagtgagccaagacagcgccattgaac-tttagcctgggtgatacagcaagactc---------------------------tgtctcaagaaag-aaagagagagagagag----agagaaagagagacagaaggaaga
s panTro5.chr6              29140160 151 + 175400573 agtctgaggcaggagaatcctttgaacctgcgaggcagtggttgcagtgagccaagacagcaccattgcac-tttagcctgggtgatacagcgtgactc---------------------------tgtctcaagaaag-aaagagagagagaaag----agagaaagagagacagaaggaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29374370 151 + 173848474 agtctgaggcaggagaatcctttgaacctgcgaggcagtggttgcagtgagccaagacagcaccattgcac-tttagcctgggtgatacagcatgactc---------------------------tgtctcaagaaag-aaagagagagagaaag----agagaaagagagacagaaggaaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5174772 156 +   6154872 agtctgaggcaggagaatcctttgaacctgcgaggcagtggttgcagtgagccaagaccgtgccattgcacttttagcctgggtgatacagcgagactc---------------------------tgtctcaagaaag-aaagagagagagagagagaaagagaaagagagaaagatggaaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74177493 149 + 122973662 agtctgaggcaggagaatcctttgaacctgcgaggcagtggttgcagtgagccaagaccgcaccattgcac-tttagcctgggtgatagagcaagactc---------------------------tgtctcaagaaag-aaagagagaaagagaa----agag--agagagacagaaggaaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29350417 149 + 172585720 agtctgaggcaggagaatcccttgaacctgcaaggcagtggttgcagtgagccaagactgtgccattgcac-tttagcctgggtgacagagcaaga--c---------------------------tgtctcaagaaag-aaagagagaaagagag----agagagagagagaaagaaagagag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29011473 149 - 170955103 agtctgaggcaggagaatcccttgaacctgcaaggcagtggttgcagtgagccaagactgtgccattgcac-tttagcctgggtgacagagcaaga--c---------------------------tgtctcaagaaag-aaagagagaaagagag----agagagagagagaaagaaagagag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1987619 145 -   2996164 agtctcaggcaggagaatcccttgaacctgcaaggcagtggttgcagtgagccaagactgtgccattgcac-tttagcctgggtgacagagcaaga--c---------------------------tgtctcaagaaag-aaagagagaaagagag----agagagagagagagagta----ag
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28309884 149 -  71996105 agtctgagggaggagaatcccttgaacctgcaaggcaggggttgcagtgagccaagaccgcgccattgcac-tttagcctgggtgacagagcaaga--c---------------------------tgtctcaagaaag-aaagagagaaagagag----agagagagagaaagaaagagagag
i chlSab2.chr17            C 0 I 10
s manLeu1.NW_012104165v1     1988083 149 +   2316924 agtctgaggcaggagaatcccttgaacctgcaaggcagtggttgcagtgagccaagaccacgccattgcac-tttagcctgggtgacagagcaaga--c---------------------------tgtctcaagaaag-aaagaaagagagagag----agagagagagaaagaaagagagag
i manLeu1.NW_012104165v1   C 0 I 10
s colAng1.NW_012115566v1     1873634 149 -   3067355 agtctgaggcaggagaatcccttgaacttgcaaggcagtggttgcagtgagccaagaccgcaccattgcac-tttagcctgggtgacagagcaaga--c---------------------------tgtctcaagaaag-aaagagagaaagagag----agagagagagaaagagagagagaa
i colAng1.NW_012115566v1   C 0 I 6
s calJac3.chr4             171395458 150 - 171630274 aggctgaggcaggagaatctcttgaatctttgaggcagtggttgcagtgacccaagatcgcaccactgcac-tccagcctgggctatagagtgagattc---------------------------tgtcaaaaaaaaagaaagaaggaaggaagg----aagaaaagagagagaagaaaga--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            220817 142 -    375362 aggctgaggcatgagaatctcttgaatctttgaggcagcagttgcagtgagccaagattgcaccactgcac-tccagcctgggcaatagagtgagattc---------------------------tgtcaaaaaaaaa-aaaaaaaaaaGGACGG----AAGgaaagagagaga---------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      220608 169 -    373274 aggctgaggcaggagaatctcttgaatctttgaggcagtggttgcagtgagccaagattgcaccactgcac-tccagcctgggcgatagagtgagattcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagaaagaaagaaaaagagaaag----aaagaaagaaagag----------
i cebCap1.NW_016108108v1   C 0 C 0
e dasNov3.JH561790             31406 17264 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888253 5065 +  26524999 I
e otoGar3.GL873742            700249   0 +   2232465 I
e aotNan1.NW_018494050v1      157781 1287 -    285216 I
e cerAty1.NW_012001495v1     1861551 570 -   2157725 I

a score=664294.000000
s hg38.chr6_GL000254v2_alt    159160 141 +   4827813 aaggagagaaggaagggagggaaag--------------------------------------------------------------------------agag-----------------agag---aaagaaggaagaaaggaag--------------------------------------------gaaa-------------------------------------------------------------ga--agg-aaggaaggaaggaaagaaaCGCAATTTAATTCAGTTCAACTGCAGTTGAGCATTTgtgggggtgggg-gcggg------gttggggt
s panTro5.chr6              29140311 141 + 175400573 aaggagagaaggaagggagggaaag--------------------------------------------------------------------------agag-----------------agag---aaagaaggaagaaaggaag--------------------------------------------gaaa-------------------------------------------------------------ga--agg-aaggaaggaaggaaagaaACGCAATTTAATTCAGTTCAACTGCAGTTGAGCATTTgtgggggtgggg-gcggg------gttggggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29374521 141 + 173848474 aaggagagaaggaagggagggaaag--------------------------------------------------------------------------agag-----------------agag---aaagaaggaagaaaggaag--------------------------------------------gaaa-------------------------------------------------------------ga--agg-aaggaaggaaggaaagaaACGCAATTTAATTCAGTTCAACTGCAGTTGAGCATTTgtgggggtgggg-gcggg------gttggggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5174928 141 +   6154872 aaggagagaaggaagggagggaaag--------------------------------------------------------------------------agag-----------------agag---aaagaaggaagaaaggaag--------------------------------------------gaaa-------------------------------------------------------------ga--agg-aaggaaggaaggaaagaaaCGCAATTTAATTGAGTTCAACTGCAGTTGAGCATTTgtgggggtgggg-gcggg------gttggggt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74177642 209 + 122973662 aaggagagaaggaagggagggaaag--------------------------------------------------------------------------agag-----------------aagg---aagaaaggaaggaaggaaa--------------------------------------------gaaaCACAATTTAATTCAGTTCAACTGCAGTTGAGCGTTTGTTGGGGGCGGGGCAGGGTTGAGATGA--GGGTAAGGAAGGAAGGAAAGAAACGCAGTTTAATTCAGTTCAACTGCAGTTGAGCATTTgtgggggcgggg-gcgggggtgcagttggggt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29350566 141 + 172585720 agagaaggaaggaaggagggaaga---------------------------------------------------------------------------aagg-----------------gagggaaagagagggaaggaaggaag--------------------------------------------gaag-------------------------------------------------------------ga--aag-aagaaaggaaggaaggaaACGCAATTTAATTCAGTTCAACTGTAGTTGAGCATtt---ggggtggggtgcggg------gttggggt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29011622 141 - 170955103 agagaaggaaggaaggagggaaga---------------------------------------------------------------------------aagg-----------------gagggaaagagagggaaggaaggaag--------------------------------------------gaag-------------------------------------------------------------ga--aag-aaggaaggaaggaaggaaACGCAATTTAATTCAGTTCAACTGTAgttgagcattt---ggggtggggtgcggg------gttggggt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1987764 133 -   2996164 agagaaggaaggaaggagggaaga---------------------------------------------------------------------------aagg-----------------gagggaaagagaaggaaggaaggaag-------------------------------------------------------------------------------------------------------------------g-aaagaaggaaggaaggaaACGCAATTTAATTCAGTTCAACTGTAgttgagcattt---ggggtggggtgcggg------gttggggt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1862121 138 -   2157725 aaggaaagaaggaaggaaggaagg---------------------------------------------------------------------------aaag-----------------aagg---aaggaaggaaggaaggaag--------------------------------------------gaag-------------------------------------------------------------ga--agg-aaggaaggaaggaaggaaACGCAATTTAATTCAGTTCAACTGTAgttgagcattt---ggggtggggtgcggg------gttggggt
i cerAty1.NW_012001495v1   I 570 C 0
s chlSab2.chr17             28310043 213 -  71996105 aaggagggaagaaagggagggaaagagaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagg-----------------aagg---aaggaaggaaggaaggaag--------------------------------------------gaag-------------------------------------------------------------ga--agg-aaggaaggaaggaaggaaACGCAATTTAATTCAGTTCAACTGTAGTTGAGCATCT---GGGGTGGGGTGCGGG------GTTGGGGT
i chlSab2.chr17            I 10 C 0
s manLeu1.NW_012104165v1     1988242 137 +   2316924 aaggagggaagaaagggagggaa----------------------------------------------------------------------------aaag-----------------aggg---aaggaaggaaggaaggaaa--------------------------------------------gaag-------------------------------------------------------------ga--agg-aaggaaggaaggaaggaaACGCAATTTAATTCAGTTCAACTGTAGTTGAGCATTT---GGGGTGGGGTGCGGG------GTTGGGGT
i manLeu1.NW_012104165v1   I 10 C 0
s colAng1.NW_012115566v1     1873789 201 -   3067355 aaggagggaagaaagggagggaaagagagggaaggaaggaagg--------------------------------------------------------aagg-----------------aagg---aaggaaggaaggaaggaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa-------------------------------------------------------------ga--aag-aaagaaagaaagaaagaaagGCAATTTAATTCAGTTCAACTGTAGTTGAGCATTT---GGGGTGGGGTGCAGG------GTTGGGTT
i colAng1.NW_012115566v1   I 6 C 0
s calJac3.chr4             171395608 138 - 171630274 aagaaggaaagaaagggagagagag--------------------------------------------------------------------------agaggaaggaaggaaggaaggaagg---aaggaaggaaggaaggaag--------------------------------------------gaga-------------------------------------------------------------aaagaga-agaggaagaaagAA-GAAACGCAAGTGAATTCA-TTCAACTTCAGTTGAGCATTG---CTGGT------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            220959 108 -    375362 ------gagagacagagagagagag--------------------------------------------------------------------------agag-------------------------agagagaaagaaagaaaa--------------------------------------------gaga-------------------------------------------------------------AA--AGA-AAAGGAAGAAAGAA-GAAACACAACTGAATTCA-TTCAACTGCAGTTGAGCATTG---CTGCT------------------------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      220777 105 -    373274 ------gaaagaaagaaagagaaag--------------------------------------------------------------------------aaag----------------------------aaagaaaaaagaaaa--------------------------------------------gaaa-------------------------------------------------------------ag--aga-aaagaaagaaagaa-gaaaCGCAAGTGAATTCA-TTCAAGTGCAGTTGAGCATTG---CTGGT------------------------
i cebCap1.NW_016108108v1   C 0 C 0
e dasNov3.JH561790             31406 17264 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888253 5065 +  26524999 I
e otoGar3.GL873742            700249   0 +   2232465 I
e aotNan1.NW_018494050v1      157781 1287 -    285216 I

a score=1105829.000000
s hg38.chr6_GL000254v2_alt    159301 113 +   4827813 gaggggttggAGACAAgcccaggctggtcttgaactcctcgcctcatgtgatcctccctcctcagcctcacccaagtgctgggattataggtgtaaaccaccgtgcccagcAG
s panTro5.chr6              29140452 113 + 175400573 gaggggttggAGACAAgcccaggctggtcttgaactcctcgcctcatgtgatcctccctcctcagcctcacccaagtgctgggattataggtgtaaaccaccgtgcccagcAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29374662 113 + 173848474 gaggggttggAGACAAgcccaggctggtcttgaactcctcgcctcatgtgatcctccctcctcagcctcacccaagtgctgggattataggtgtaaaccaccgtgcccagcAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5175069 113 +   6154872 gaggggttggAGACAAgcccaggctggtcttgaactcctcgcctcatgtgatcctccctcctcagcctcacccaagtgctgggattataggtgtaaaccaccgtgcccagcAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74177851 113 + 122973662 gaggggttggAGACAAgcccaggctggtcttgaactcctggcctcatgtgatcctccctcctcagcctcacccaaatgctgggattataggtgtaaaccaccgtacccagcAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29350707 113 + 172585720 gaggggttggAGACAAgcccaggctggtcttgaactctcggcctcatgtgatcctctctcctcagcctcacccaagtgctaggatgataggtgtaaaccaccgtgcccagcAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29011763 113 - 170955103 gaggggttggAGACAAgcccaggctggtcttgaactctcggcctcatgtgatcctctctcctcagcctcacccaagtgctaggatgataggtgtaaaccaccgtgcccagcAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1987897 113 -   2996164 gaggggttggAGACAAgcccaggctggtcttgaactctcggcctcatgtgatcctctctcctcagcctcacccaagtgctaggatgataggtgtaaaccaccgtgcccagcAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1862259 113 -   2157725 gaggggttggAGACAAgcccaggctggtcttgaactctcggcctcatgtgatcctctctcctcagcctcacccaagtgctaggatgataggtataaaccaccgtgcccagcAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28310256 113 -  71996105 GAGGGGTTGGAGACAAgcccaggctggtcttggactctcggcctcatgtgatcctctctcctcagcctcacccaagtgctaggatgataggtgtaaaccaccatgcccagcAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1988379 113 +   2316924 GAGGGATTGGAGACAAgcccaggctggtcttgaactctcggcctcatgtgatcctctctcctcagcttcacccaagtgctaggatgataggtgtaaactaccgtgcccagcAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1873990 113 -   3067355 GAGGGGTTGGAGACAAgcccaggctggtcttgaactcttggcctcatgtgatcctctctcctcagcctcacccaagtactaggattataggtgtaaaccaccgtgcccagcAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171395746 113 - 171630274 GAGGGGCTGGAAACCAgcccgagctggtcttgaactcctggcctcatgtaatcctccctcctcagcctcacccacgtgctcagattatagttgtaaaccaccatgcctagcAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            221067 107 -    375362 GA------GGACATCAgccggagctggtcttgaactcctggcctcatgtaatcctccctcctcagcctcacccacatgcttggattatagttgtaaaccaccatgcctagcAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      220882 113 -    373274 GAGGGGCTGGAGACCAGCCTGAGCTGTTcttgaactcatggcctcatgtaatcctctctcctcagcctcacccacatgcatggattgtagttgtaagccaccatgcctagcAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      159068 113 -    285216 gaggggctggAGACCAGCccgagctggtcttgaacttctgaccgcatgtaatcctccctcctcagcctcacccaaatgcttggattatggttgtaaaccaccgtgcctagcAG
i aotNan1.NW_018494050v1   I 1287 C 0
e dasNov3.JH561790             31406 17264 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25888253 5065 +  26524999 I
e otoGar3.GL873742            700249   0 +   2232465 I

a score=1225840.000000
s hg38.chr6_GL000254v2_alt    159414 111 +   4827813 GACAGTCAAGAAAATTGAAACTGGAAAGTACCTTGGCC----TTTTACCCCAAATCTACACAATTTTACACAGTGGCAGTGCTTTT--TCCTCTAACGCTATAAT---AGAATTCTGCAG
s panTro5.chr6              29140565 111 + 175400573 GACAGTCAAGAAAATTGAAACTGGAAAGTACCTTGGCC----TTTTACCCCAAATCTACACAATTTTACACAGTGGCAGTGCTTTT--TCCTCTAACGCTATAAT---AGAATTCTGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29374775 111 + 173848474 GACAGTCAAGAAAATTGAAACTGGAAAGTACCTTGGCC----TTTTACCCCAAATCTACACAATTTTACACAGTGGCAGTGCTTTT--TCCTCTAACGCTATAAT---AGAATTCTGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5175182 111 +   6154872 GACAGTCAAGAAAATTGAAACTGGAAAGTACCTTGGCC----TTTTACCCCAAATCTACACAATTTTACACAGTGGCAGTGCTTTT--TCCTCTAACGCTATAAT---AGAATTCTGCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74177964 111 + 122973662 GACAGTCAAGAAAATTGAAACTGGAAAGTATCTTGGCC----TTTTACCCCAAATCTACACAATTTTACACAGTGGCAGTGCTTTT--TCCTCTAACGCTATAAT---AGAATTCTGCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29350820 111 + 172585720 GACGGTCAAGAAAATTGAAACTGGAAAGTACCTTGGCC----TTTTACCCCAAATCTACACAATTTTACACAGTGTCAGTGCTTTT--TCCTCTAACCCTATAAT---AGAATTCTGCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29011876 111 - 170955103 GACGGTCAAGAAAATTGAAACTGGAAAGTACCTTGGCC----TTTTACCCCAAATCTACACAATTTTACACAGTGGCAGTGCTTTT--TCCTCTAACCCTATAAT---AGAATTCTGCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1988010 111 -   2996164 GACGGTCAAGAAAATTGAAACTGGAAAGTACCTTGGCC----TTTTACCCCAAATCTACACAATTTTACACAGTGGCAGTGCTTTT--TCCTCTAACCCTATAAT---AGAATTCTGCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1862372 111 -   2157725 GACGGTCAAGAAAATTGAAACTGGAAAGTACCTTGGCC----TTTTACCCCAAATCTACACAATTTTATACAGTGGCAGTGCTTTT--TCCTCTAACCCTGTAAT---AGAATTCTGCAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28310369 111 -  71996105 GACGGTCAAGAAAATTGAAACTGGAAAGTACCTTGGCC----TTTTACCCCAAATCTACACAATTTTACACAGTGGCAGTGCTTTT--TCCTCTAACCCTATAAT---AGAATTCTGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1988492 111 +   2316924 GACGGTCAAGAAAATTGAAACTGGAAAGTACCTTGGCC----TTTTACCCCAAATCTACACAATTTTACACAGTGGCAGTGCTTTT--TCCTCTAACCCTGTAAT---AGAATTCTGCAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1874103 111 -   3067355 GACAGTCAAGAAAATTGAAACTGGAAAGTACCTTGGCC----TTTTACCCCAAATCTACACAATTTTACACAGTGGCAGTGCTTTT--TCCTCTAACCCTGTAAT---AGAATTCTGCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171395859 111 - 171630274 GACAGTCAAGAAAATTGAAGCTGGAAAGTACCATGGTC----TTTTACCCCAAATCTACCCAATTTTACACAGTAGCTGTGCTGTT--TCCTCTAGCCCTATAAT---AGAAATCTGCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            221174 111 -    375362 GACAGTCAAGAAAATTGAAACTGGAAAGCACCTTGGTC----TTTTACCCCAAATCTACCCAATTTTACACAGTGGCAGTGCTGTT--TCCTCTAGCCGTATAAT---AGAATTCTGCAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      220995 115 -    373274 GACAATCAAGAAAATTGAAACTGGAAAACACCTTGGTCTTTTTTTTACCCCAAATCTACCCAATTTTATACAGTGGCAGTGCTGTT--TCCTCTAGCCCTATAAT---AGAATTCTGCAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      159181 113 -    285216 GACAGTCAAGAAAATTGAAACTGGAAAGCACCTTGGTC----TTTTACCCCAAATCTACCCAATTTTATACAGCGGCAGTGCTGTTTCTCCTCTAGCCCTATAAT---AGAATTCTGCAG
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25893318 114 +  26524999 GATAGTCAAAGAACTTCAAACTGGGAGCTATTTTAGAC----TTTTGCCACAAATCTTCAGGACTTCCTTCATCTGCAGTGCTTTC--CCCCCTACCCCTGTGATAGGAGAATTCTGCAG
i canFam3.chr35            I 5065 I 3813
e dasNov3.JH561790             31406 17264 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e otoGar3.GL873742            700249   0 +   2232465 I

a score=72450.000000
s hg38.chr6_GL000254v2_alt    159525 7 +   4827813 GAGAATT
s panTro5.chr6              29140676 7 + 175400573 GAGAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29374886 7 + 173848474 GAGAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5175293 7 +   6154872 GAGAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74178075 7 + 122973662 GAGAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29350931 7 + 172585720 GAGAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29011987 7 - 170955103 GAGAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1988121 7 -   2996164 GAGAATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1862483 7 -   2157725 GAGAATT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28310480 7 -  71996105 GAGAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1988603 7 +   2316924 GAGAATT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1874214 7 -   3067355 GAGAATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171395970 7 - 171630274 GAGAATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            221285 7 -    375362 GAGAAGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      221110 7 -    373274 GAGAATT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      159294 7 -    285216 GAGAATT
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             31406 17264 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25893432 3813 +  26524999 I
e otoGar3.GL873742            700249 0 +   2232465 I

a score=3864231.000000
s hg38.chr6_GL000254v2_alt    159532 390 +   4827813 CTTTCAGGGAGTTCACCTTTTGTTTT-ATTAGAGAGCTAAGTAACCTTGGGAGGTTGGGCTGACTTTGGAAGCTTCTGGAAATAAATGGGGGTTTAACAGATATTAA-----------CTTCATCCCGCCTTACAGATAAATGCCATTTTACTTTGAAAAGCAGTAGGTGGGGGT---------AGGGGG-CGAGAAAT-AGAAAATTCCATCAGTTTGGTGAAAGCTTTT-AGAGGATAACGTACTCTGTTCCATGAAAGAATCAGAAATGTGAGCAATGCAGGGAGAAGTAAGGTAAATCCAGACAAGCAGGATGGATTCCAGATGAGAAACCA-TATCTTCCATAGTGAATTTTGAAATGAATTTAAAATCTCCTAT---------TATATAATCTGCAGTTTACTTTGTT-TTCTTGTTGG
s panTro5.chr6              29140683 390 + 175400573 CTTTCAGGGAGTTCACCTTTTGTTTT-ATTAGAGAGCTAAGTAACCTTGGGAGGTTGGGCTGACTTTGGAAGCTTCTGGAAATAAATGGGGGTTTAACAGATATTAA-----------CTTCATCCCGCCTTACAGATAAATGCCATTTTACTTTGAAAAGCAGTAGGTGGGGGT---------AGGGGG-CGAGAAAT-AGGAAATTCCATCAGTTTGGTGAAAGCTTTT-AGAGGATAATGTACTCTGTTCCATGAAAGAATCAGAAATGTGAGCAATGCAGGGAGAAGTAAGGTAAATCCAGACAAGCAGGATGGATTCCAGATGAGAAACCA-TATCTTCCATAGTGAATTTTGAAATGAATTTAAAATCTCCTAT---------TATATAATCTGCAGTTTACTTTGTT-TTCTTGTTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29374893 390 + 173848474 CTTTCAGGGAGTTCACCTTTTGTTTT-ATTAGAGAGCTAAGTAACCTTGGGAGGTTGGGCTGACTTTGGAAGCTTCTGGAAATAAATGGGGGTTTAACAGATATTAA-----------CTTCATCCCGCCTTACAGATAAATGCCATTTTACTTTGAAAAGCAGTAGGTGGGGGT---------AGGGGG-CGAGAAAT-AGGAAATTCCATCAGTTTGGTGAAAGCTTTT-AGAGGATAATGTACTCTGTTCCATGAAAGAATCAGAAATGTGAGCAATGCAGGGAGAAGTAAGGTAAATCCAGACAAGCAGGATGGATTCCAGATGAGAAACCA-TATCTTCCATAGTGAATTTTGAAATGAATTTAAAATCTCCTAT---------TATATAATCTGCAGTTTACTTTGTT-TTCTTGTTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5175300 391 +   6154872 CTTTCAGGGAGTTCACCTTTTGTTTT-ATTAGAGAGCTAAGTAACCTTGGGAGGTGGGGCTGACTTTGGAAGCTTCTGGAAATAAAT-GGGGTTTAACAGATATTAA-----------CTTCATCCCGCCTTACAGATAAATGCCATTTTACTTTGAAAAGCAGTAAGTGGGGGT---------AGGGGG-CGAGAAAT-AGGAAATTCCATCAGTTTTGTGAAAGCTTTT-AGAGGATAATGTACTCTGTTCCGTGAAAGAATCAGAAATGTGAGCAATGCAGGGAGAAGTAAGGTAAATCCAGACAAGCAGGATGGATTCCAGATGAGAAACCA-TATCTTCCATAGTGAATTTTGAAATGAATTTAAAATCTCCTATTA-------TATATAATTTGCAGTTTACTTTGTT-TTCTTGTTGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74178082 390 + 122973662 CTTTCAGGGAGTTCACCTTTTGTTTT-ATTAGAGAGCTAAGTAACCTTGGGAGGTTGGGCTGACTTTGGAAGCCTCTGGAAATAAACAGGGGTTTAACAGATATTAA-----------CTTCATCCCGCCTTACAGATAAATGCCATTTTACTTTGAAAAGCAGTAGGTGGGGGT---------GGGGGG-CGAGAAAT-AGGAAATTCCATCAGTTTTGTGAAAGCTTTT-AGAGGATAATGTACTCTGTTCCATGAAAGAATCAGAAATGTGAGCAATGCAGGGAGAAGTAAGGTAAATCCAGACAAGCAGGATGGATTCCAGATGAGAAACCG-TATCTTCCATGGTGAATTTTGAAATGAATTTAAAATCTCCTAT---------TACATAATCTGCAGTTTACTTTGTT-TCCTTGTTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29350938 390 + 172585720 ATTTCAGGGAGTTCACCTTTTGTTTT-ATTAGAGAGTTAAGTAACATTGGGAGGTTGGGGTGATTTTGGAAGCTTCTGGAAATAAAGGGGGGTTTAACAGACATTAA-----------CTTCATCCCGCCTTGCAGATAAATGCCATTTTACTTTGAAAAGCAGTAGGTGGGGGT---------GGGGGG-CGAGAAAT-AGAAAATTCCATCAGTTTTGTAAAAACTTTT-AGAGGATAATGTACTCTGTTCCATGAAAGAATCAGAAATGTGAGCAATGCAGGGAGAAGCAGGGTAAATCCAGACACACATGATGGGTTCCAGATGAGAAACCATTATCTTCCATAGCAAATTCTGAAATGAATTTAAAATCTCC-AT---------TACATAGTCTGCAGTTTACCTTGTT-TTCTTGTTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29011994 391 - 170955103 ATTTCAGGGAGTTCACCTTTTGTTTT-ATTAGAGAGTTAAGTAACATTGGGAGGTTGGCGTGATTTTGGAAGCTTCTGGAAATAAAGGGGGGTTTAACAGACATTAA-----------CTTCATCCCGCCTTGCAGATAAATGCCATTTTACTTTGAAAAGCAGTAGGTGGGGGT---------GGGGGG-CGAGAAAT-AGAAAATTCCATCAGTTTTGTAAAAACTTTT-AGAGGATAATGTACTCTGTTCCATGAAAGAATCAGAAATGTGAGCAATGCAGGGAGAAGCAGGGTAAATCCAGACACACATGATGGGTTCCAGATGAGAAACCATTATCTTCCATAGCAAATTCTGAAATGAATTTAAAATCTCCTAT---------TACATAGTCTGCAGTTTACCTTGTT-TTCTTGTTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1988128 392 -   2996164 ATTTCAGGGAGTTCACCTTTTGTTTT-ATTAGAGAGTTAAGTAACATTGGGAAGTTGGGGTGATTTTGGAAGCTTCTGGAAATAAAGGGGGGTTTAACAGACATTAA-----------CTTCATCCCGCCTTGCAGATAAATGCCATTTTACTTTGAAAAGCAGTAGGTGGGGGTG--------GGGGGG-CGAGAAAT-AGAAAATTCCATCAGTTTTGTAAAAACTTTT-AGAGGATAATGTACTCTGTTCCATGAAAGAATCAGAAATGTGAGCAATGCAGGGAGAAGCAGGGTAAATCCAGACACACATGATGGGTTCCAGATGAGAAACCATTATCTTCCATAGCAAATTCTGAAATGAATTTAAAATCTCCTAT---------TACATAGTCTGCAGTTTACCTTGTT-GTCTTGTTGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1862490 391 -   2157725 ATTTCAGGGAGTTCACCTTTTGTTTT-ATTAGAGAGTTAAGTAACATTGGGAGGTTGGGGTGATTTTGGAAGCTTCTGGAAATAAAGGGGGGTTTAACAGACATTAA-----------CTTCATCCCGCCTTGCAGATAAATGCCATTTTACTTTGAAAAGCAGTAGGTGGGGGT---------GGGGGG-CGAGAAAT-AGGAAATTCCATCAGTTTTGTAAAAACTTTT-AGAGGATAATGTACTCTGTTCCATGAAAGAATCAGAAATGTGAGCAATGCAGGGAGAAGCAGGGTAAATCCAGACACACATGATGGATTCCAGATGAGAAACCATTATCTTCCATAGCAAATTCTGAAATGAATTTAAAATCTCCTAT---------TACATAGTCTGCAGTTTACCTTGTT-TTCTTGTTGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28310487 391 -  71996105 ATTTCAGGGAGTTCACCTTTTGTTTT-ATTAGAGAGTTAAGTAACATTGGGAGGTTGGGGTGATTTTGGAAGCTTCTGAAAATAAAGGGGGGTTTAACAGACATTAA-----------CTTCATCCCGCCTTGCAGATAAATGCCATTTTACTTTGAAAAGCAGTAGGTGGGGGT---------GGGGGG-CGAGAAAT-AGGAAATTCCATCAGTTTTGTAAAAACTTTT-AGAGGATAATGTACTCTGTTCCATGAAAGAATCAGAAATGTGAGCAATGCAGGGAGAAGCAGGGTAAATCCAGACACACATGATGGGTTCCAGATGAGAAACCATTATCTTCCATAGCAAATTCTGAAATGAATTTAAAATCTCCTAT---------TACATAGTCTGCAGTTTACCTTGTT-TTCTTGTTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1988610 391 +   2316924 ATTTCAGGGAGTTCACCTTTTGTTTT-ATTAGAGAGTTAAGTAACATTGGGAGGTTGGGGTGATTTTGGAAGCTTCTGGAAATAAAGGGGGGTTTAACAGACATTAA-----------CTTTATCCCGCCTTGCAGATAAATGCCATTTTACTTTGAAAAGCAGTAGGTGGGGGT---------GGGGGG-CGAGAAAT-AGGAAATTCCATCAGTTTTGTAAAAACTTTT-AGAGGATAATGTACTCTGTTCCATGAAAGAATCAGAAATGTGAGCAATGCAGGGAGAAGCAGGGTAAATCCAGACACACATGATGGGTTCCAGATGAGAAACCATTATCTTCCATAGCAAATTCTGAAATGAATTTAAAATCTCCTGT---------TACATAGTCTGCAGTTTACCTTGTT-TTCTTGTTGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1874221 399 -   3067355 ATTTCAGGGAGTTCACCTTTTGTTTT-ATTAGAGAGTTAAGTAACATTGGGAGGTTGGGGCGATTTTGGAAGCTTCTGGAAATAAAGGGGGGTTTAACAGACATTAActtcatcccgccttcatcccgccttGCAGATAAATGCCATTTTACTTTGAAAAGCAGTAGGTGGGGGT---------GGAGGG-CGAGAAAC-AGGAAATTCCATCAGTTTTGTAAAAACTTTT-AGAGGATAATGTACTCTGTTCCATGAAAGAATCAGAAATGTGAGCAATGCAGGG---AGTAGGGTAAATCCAGACACGCATGATGGGTTCCAGATGAGAAACTATTATCTTCCATAGTGAATTCTGAAATGAATTTAAAATCTCCTAT---------TACATAGTCTGCAGTTTACCTTGTT-TTCTTGTTGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171395977 391 - 171630274 ATTTCAGGGAGTTTGCCTTTTGTTTT-ATTAGAGAGCTGAGTAATACTGGGAGGTTGGGGTGGCTTTGGAAGCTTCTGGACATAACGGCG-GTTTAAC--ACATCAA-----------CTCCATCTCACCTCACAGATAAATGCCATTTCACTTTGAAAAGCAGCAAGTGGTGGCGGCGGGGGTGGCGGGTCAAAAAATAAAAAAATTCCATCAGTTTTGTGAAAGCTTTT-AGAGAATAATGAACTCTGTTGCATGAAAGAATCAGAAATGTGAGAAATGCAGGGAGAAG---GGTAAATCCAGACAGGCAGGATGGATTCCAGATGAGAAAC---TATCTTCCATAGTGGATTTTGAAAGGAATTTATAATCTCCTAT---------TACATCATTTGCAGTTTACTTTG-T-TTCTTGTTG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            221292 350 -    375362 ATTTCAGGGAGTTTGCCTTTTGTTTT-ATTAGAGAGCTAAGTAACACTGGGAGGTTGGGGTGGCTTTGGAAGCCTCTGGAAATAAAGGGGTGTTTAACAGACATTAA-----------CTCCATGTCACCTCACAGATAAATGCCATTTTACTTTGAAAAGCAGCAAGTGGCGGC---------GGGGGGTCGAAAAAT-AAGAAATTCCATCAGTTTTGTGAAAGCTGTT-AGAGAATAATGAACTCTGTTCCATGAAAGAATTAGAAATGTGAGCGATGCAGGGAGAAG---GGTAAATCCAGACATGCAGGATGGATTCCAGATGAGAAACCG-TATCTTCCTTAGTGAATTTTGAAAGGAATTTATAATCTCC------------------------------------------------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      221117 387 -    373274 ATTTCAGGGAGTTTGCCTTTTGTTTT-ATTAGAGAGCTAAGTAACATTGGGAGGTTGGGGTGGCTTTGTAAGCTTCTGGAAATAAAGGGGGGTTTAACAGACATTAA-----------CTCCATCTCACCTCACAGATAAATGCCATTTTACTTTGAAAAGCAGCAAGTGGCAGT---------GGGGGGTCGAAAAAT-AAGAAATTCCATCAGTTTTGTGAAAGATTTT-AGAGAATAATGAACTCTGTTCCATGAAAGAATTAGAAATGTGAGCAACGCAGGGAGAAG---GGTAAATCCAGACACGCAGAATGGATTCCAGATGAGAAACCG-TATCTTCCATAGTGAATTTTGAAAGG-ATTTATAATCTCCTAT---------TACATAATTTGCAGTTTACTTTGTT-TTCTTGTTGA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      159301 388 -    285216 ATTTCAGGAAGTTTGCCTTTTGTTGT-ATTAGAGAGCTAAGTAACATTGGGAGGTTGGGATGGCTTTGGAAGCTTCTGGAAATACAGAGGGGCTTAACAGACATTAA-----------CTCCATCTCACCTCACAGATAAATGCCATTTTACTTTGAAAAGCAGCAAGTGGCGGC---------GGGGGGTCAAAAAAT-AAGAAATTCCATCAGTTTTGTGAAAGCTTTT-AGAGAATAATAAACTCTGTTCCATGAAAGAATTAGAAATGTGAGCAATGCAGGGAGAAG---GGTAAATCCAGACACGCAGGATGGATTCCAGATGAGAAACCG-TATCTTCCATAGTGAATTTTGAAAGGAATTTATAATCTCCTGT---------TACATAATTTGCAGTTTACTTTGTT-TTCTTGTTAG
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             48670 383 -    302817 CCCTTGAGAAATTCACCATTTATTTTCCTCAGGAAGCCAAGCTATATTGGGAGGATGGGATGCCCTTGGATATTTCTGAAGAAAAGTGCTTGAAAAACAGGTATTTC-----------CTCTATGCCACCTTACAGATAATTGGCATTTTACTTCATA----------------T---------GGGGAA-GTGAGAAT-GGGAAACTCCTTACGTTTTGTGAAAGCTCTTCAGAGGAGAAT---TCTTATTCCAAAAAAGAATCAGAAATGCAAACACTGCAGAGAGCAATAGGGTAAATCCAGGTATATAGAGTGGATTTTGGGTAAGAGCATA-CATCTTCCATTGTAAATTTTGAAAGAGTTTTTAAATCTCCTTTTCGTTCTTTTAAATAATCAGCAGTCCattttattctccttgttgg
i dasNov3.JH561790         I 17264 I 1991
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25893432 3813 +  26524999 I
e otoGar3.GL873742            700249   0 +   2232465 I

a score=455803.000000
s hg38.chr6_GL000254v2_alt    159922 54 +   4827813 AGAAAGTGGTT-TTTGGAGTCCAAGTATGCAGAGGGCACCTAGGATTCCAGAGTT
s panTro5.chr6              29141073 54 + 175400573 AGAAAGTGGTT-TTTGGAGTCCAAGTATGCAGAGGGCACCTAGGATTCCAGAGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29375283 54 + 173848474 AGAAAGTGGTT-TTTGGAGTCCAAGTATGCAGAGGGCACCTAGGATTCCAGAGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5175691 54 +   6154872 AGAAAGTGGTT-TTTGGAGTCCAAGTGTGCAGAGGGCACCTAGGATTCCAGAGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74178472 55 + 122973662 AGAAAGTGGTTGTGTGGAGTCCAAGTGTGCAGAGGGCACCTAGGATTCCAGAGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29351328 55 + 172585720 AGAAAGTGGTTTTGTGGAGTCCAAGTGTGCAGAGGGCACCTAGGATTCCAGAGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29012385 55 - 170955103 AGAAAGTGGTTTTGTGGAGTCCAAGTGTGCAGAGGGCACCTAGGATTCCAGAGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1988520 55 -   2996164 AGAAAGTGGTTTTTTGGAGTCCAAGTGTGCAGAGGGCACCTAGGATTCCAGAGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1862881 55 -   2157725 AGAAAGTGGTTTTGTGGAGTCCAAGTGTGCAGAGGGCACCTAGAATTCCAGAGTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28310878 55 -  71996105 AGAAAGTGGTTTTGTGGAGTCCAAGTGTGCAGAGGGCACCTAGGATTCCAGAGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1989001 55 +   2316924 AGAAAGTGGTTTTGTGGAGTCCAAGTGTGCAGAGGGCACCTAGGATTCCAGAGTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1874620 55 -   3067355 AGAAAGTGGTTTTGTGGAGTCCAAGTGTGCAGAGGGCACCTAGGATTCCAGAGTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171396368 39 - 171630274 AGAAAGTGGTTT-------------TGTGCAGAGAGCACATAAGATTccaga---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            221642 33 -    375362 GCAAAG-------------------TGCGCAGAGAGCACGTAGGATTccaga---
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      221504 55 -    373274 AGAAAGTGGTTTTGTGGAGGCAAAGTGTGCAGAGAGCATGTAGGATTCCAGAGTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      159689 55 -    285216 AGAAAGTGGTTTTGTGGAGGCAAAGTGTGCAGAGAGCACGTAGGATTccagagtt
i aotNan1.NW_018494050v1   C 0 I 5168
e dasNov3.JH561790             49053 1991 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25893432 3813 +  26524999 I
e otoGar3.GL873742            700249  0 +   2232465 I

a score=1267769.000000
s hg38.chr6_GL000254v2_alt    159976 162 +   4827813 AATGGGACTGAAGAGAAAAAAGCgtaacctgacccagattctgctgctcaccgctccaaagcc-aaatgctagaggggaggtttggtgggaggaaaagctgcttttaatccgaaagccagcaaactgagaagatggaacactagtgttctaaagtaccacctt
s panTro5.chr6              29141127 162 + 175400573 AATGGGACTGAAGAGAAAAAAGCgtaacctgacccagattctgctgctcaccgctccaaagcc-aaatactagaggggaggtttggtgggaggaaaagctgcttttaaaccgaaagccagcaaactgagaagatggaacactagtgttctaaagtaccacctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29375337 162 + 173848474 AATGGGACTGAAGAGAAAAAAGCgtaacttgacccagattctgctgctcaccgctccaaagcc-aaatactagaggggaggtttggtgggaggaaaagctgcttttaatccgaaagccagcaaactgagaagatggaacactagtgttctaaagtaccacctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5175745 162 +   6154872 AATGGGACTGAAGAGAAAAAAGCAtaacctgacccagattctgctgctcaccgctccaaagcc-aaatactagaggggaggtttggtgggaggaaaagctgcttttaatccgaaagccagcaaactgagaaggtggaacactagtgttctaaagtaccacctt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74178527 162 + 122973662 AATGGAACTGAAGGGAAAAAAGCgtaacctgacccagattctgctgctcaccgctccaaagcc-aaatactagaggggaggtttggtgggaggagaagctgcttttaatccgaaagccagcaaactgagaagatggaacactagtgttctaaagtaccacctt
i nomLeu3.chr1a            C 0 I 1218
s rheMac8.chr4              29351383 162 + 172585720 AATGGGACTGGAAGGAAAAAAGCAtaacctgacccagattctgctgctcaccgctccaaagcc-aaatattagaggggaggtttggtgggaggaaaagcagcttttaatctgaaatccagcaaattgagaagatggaacactagtgttctacagtaccacctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29012440 162 - 170955103 AATGGGACTGGAAGGAAAAAAGCAtaacctgacccagattctgctgctcaccgctccaaagcc-aaatattagaggggaggtttggtgggaggaaaagcagcttttaatctgaaatccagcaaattgagaagatggaacactagtgttctacagtaccacctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1988575 162 -   2996164 AATGGGACTGGAGGGAAAAAAGCAtaacctgacccagattctgctgctcaccgctccaaagcc-aaatattagaggggaggtttggtgggaggaaaagcagcttttaatctgaaatccagcaaattgagaagatggaacaccagtgttctacagtaccacctt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1862936 162 -   2157725 AATGGGACTGGAGGGAAAAAAGCAtaacctgacccagattctgctgctcactgctccaaagcc-aaatattagaggggaggtttggtgggaggaaaagcagcttttaatctgaaatccagcaaactgagaagatggaacactagtgttctacagtaccacctt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28310933 162 -  71996105 AATGGGACTGGAGGGAAAAAAGCAtaacctgacctagattctgctgctcaccgctccaaagcc-aaatattagaggggaggtttggtgggaggaaaagcagcttttaatctgaaatccagcaaattgagaagatggaacactagtgttctacagtaccacctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1989056 163 +   2316924 AATGGGACTGGAGGGAAAAAAGCAtaacctgacccagattctgctgctcaccgctccaaagccaaaatattagaggggaggtttggtgggaggaaaagcagcttttaatctgaaatccagcaaactgagaagatggaacactagtgttctacagtaccacctt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1874675 162 -   3067355 AATGGGACTGGAGGGAAAAAAGCAtaacctgacccagattctgctgctcaccgctccaaagcc-aaatattagaggggaggtttggtgggaggaaaagcggcttttaatctgagatccagcaaactgagaagatggaacactagtgttctaaagtaccacctt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171396407 124 - 171630274 -------------------------------------gttctgctga-cacccctccaaagcc-acatactccagggcagctttggtgggaggaaaagcggccattaatccaaaagccagccaactgaaaagacggcaaactagcgttgtcaagtaccacctt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            221675 124 -    375362 -------------------------------------gttctgctga-caccactccaaagcc-acatcctcgagggcaggtttggtgggaggaaaagcagctattaatctgaaagccagcaaactgagaaggtggcgaaccagcgttctaaagtaccacctt
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      221559 161 -    373274 AATGGACCTGGAGGGAAAAGAGtgtaaactgacccaggttctgctga-cactgctccaaagcc-atatactcgagggcaggtttggtgggaggaaaagctgctattaatccgaaagccagcaaactgagaagatggcaaactagcattctaaagtaccacctt
i cebCap1.NW_016108108v1   C 0 C 0
e dasNov3.JH561790             49053 1991 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25893432 3813 +  26524999 I
e otoGar3.GL873742            700249   0 +   2232465 I
e aotNan1.NW_018494050v1      159744 5168 -    285216 I

a score=124875.000000
s hg38.chr6_GL000254v2_alt    160138 20 +   4827813 aaaatttaaaatttaccata
s panTro5.chr6              29141289 20 + 175400573 aaaatttaaaatttaccata
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29375499 20 + 173848474 aaaatttaaaatttaccata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5175907 20 +   6154872 aaaatttaaaatttacgata
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29351545 20 + 172585720 aaattttaaaatttaccata
i rheMac8.chr4             C 0 I 7183
s macFas5.chr4              29012602 20 - 170955103 aaattttaaaatttaccata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1988737 20 -   2996164 aaatttttaaatttaccata
i macNem1.NW_012011356v1   C 0 I 11051
s cerAty1.NW_012001495v1     1863098 20 -   2157725 aaattttaaaatttaccata
i cerAty1.NW_012001495v1   C 0 I 8238
s chlSab2.chr17             28311095 20 -  71996105 aaattttaaattttaccata
i chlSab2.chr17            C 0 I 2887
s manLeu1.NW_012104165v1     1989219 20 +   2316924 aaattttaaaatttaccata
i manLeu1.NW_012104165v1   C 0 I 7158
s colAng1.NW_012115566v1     1874837 20 -   3067355 aaattttaaaatttaccata
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171396531 20 - 171630274 acattttaaaatgtaccata
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            221799 18 -    375362 aca--ttaaaaagtaccata
i saiBol1.JH378348         C 0 I 7212
s cebCap1.NW_016108108v1      221720 20 -    373274 acatttcaaaatgtaccata
i cebCap1.NW_016108108v1   C 0 I 6283
e dasNov3.JH561790             49053 1991 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25893432 3813 +  26524999 I
e otoGar3.GL873742            700249  0 +   2232465 I
e aotNan1.NW_018494050v1      159744 5168 -    285216 I
e nomLeu3.chr1a             74178689 1218 + 122973662 I

a score=6506.000000
s hg38.chr6_GL000254v2_alt    160158 6 +   4827813 cggttt
s panTro5.chr6              29141309 6 + 175400573 cggttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29375519 6 + 173848474 cggttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5175927 6 +   6154872 gggttt
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29012622 6 - 170955103 gggtgt
i macFas5.chr4             C 0 C 0
s colAng1.NW_012115566v1     1874857 6 -   3067355 gggtgt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171396551 6 - 171630274 ggattt
i calJac3.chr4             C 0 I 5400
e dasNov3.JH561790             49053 1991 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25893432 3813 +  26524999 I
e saiBol1.JH378348            221817 7212 -    375362 I
e otoGar3.GL873742            700249 0 +   2232465 I
e aotNan1.NW_018494050v1      159744 5168 -    285216 I
e cebCap1.NW_016108108v1      221740 6283 -    373274 I
e manLeu1.NW_012104165v1     1989239 7158 +   2316924 I
e chlSab2.chr17             28311115 2887 -  71996105 I
e cerAty1.NW_012001495v1     1863118 8238 -   2157725 I
e macNem1.NW_012011356v1     1988757 11051 -   2996164 I
e rheMac8.chr4              29351565 7183 + 172585720 I
e nomLeu3.chr1a             74178689 1218 + 122973662 I

a score=1365.000000
s hg38.chr6_GL000254v2_alt    160164 1 +   4827813 t
s panTro5.chr6              29141315 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29375525 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5175933 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29012628 1 - 170955103 t
i macFas5.chr4             C 0 I 6989
s colAng1.NW_012115566v1     1874863 1 -   3067355 t
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             49053 1991 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25893432 3813 +  26524999 I
e saiBol1.JH378348            221817 7212 -    375362 I
e otoGar3.GL873742            700249 0 +   2232465 I
e aotNan1.NW_018494050v1      159744 5168 -    285216 I
e cebCap1.NW_016108108v1      221740 6283 -    373274 I
e calJac3.chr4             171396557 5400 - 171630274 I
e manLeu1.NW_012104165v1     1989239 7158 +   2316924 I
e chlSab2.chr17             28311115 2887 -  71996105 I
e cerAty1.NW_012001495v1     1863118 8238 -   2157725 I
e macNem1.NW_012011356v1     1988757 11051 -   2996164 I
e rheMac8.chr4              29351565 7183 + 172585720 I
e nomLeu3.chr1a             74178689 1218 + 122973662 I

a score=272864.000000
s hg38.chr6_GL000254v2_alt    160165 330 +   4827813 tgtgtttttgtttttttgttttttgttttttcctgtgacagagtctcactctgttgcccaggctggagtgcagtggtgcaatcttggctcactgcaacctccacctcccgggttcaagtgattttcctgcctcagcctcctgagtagctgggattacaggcatctgccaccacactcagctaatttttgtgtttttagtagagacagggtttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccactccgggccTACCATAGGGTTTT
s panTro5.chr6              29141316 330 + 175400573 tgtgtttttgtttttttgttttttgttttttcctgtgacagagtctcactctgttgcccaggctggagtgcagtggtgcaatcttggctcactgcaacctccacctcccgggttcaagtgattttcctgcctcagcctcctgagtagctgggattacaggcatctgccaccacactcagctaatttttgtgtttttagtagagacagggtttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccactccggacctaccatagggtttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29375526 329 + 173848474 tgtgtttttg-ttttttgttttttgttttttCCTGTgacagagtctcactctgttgcccaggctggagtgcagtggtgcaatcttggctcactgcaacctccacctcccgggttcaagtgattttcctgcctcagcctcctgagtagctgggattacaggcatctgccaccacactcagctaatttttgtgtttttagtagagacagggtttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccactccggaccTACCATAGGGattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5175934 322 +   6154872 tgt--------ttttttgttttttgttttttcctgtgacagagtctcactctgttgcccaggctggagtgcagtggtgcaatcttggctcactgcaacctccacctcccgggttcaagtgattttcctgcctcagcctcctgagtagctgggattacaggcatctgccaccacacccagctaatttttgtgtttttagtagagacagggtttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatccacctgcctcggcctcccaaagtggtgggattacaggcgtgagccaccactccgggcctaccgtagggtttt
i gorGor5.CYUI01015250v1   C 0 C 0
s colAng1.NW_012115566v1     1874864 301 -   3067355 -----------------------tgtt------tgtgacagagtctcactctgttgcccaggctggaggctagtggcacaatcttggctcactgcaacgtctgcctcccgggttcaactgattctcctgcctcaggctcctgagtagctgggattacaggcatctgctaccacacccagctaatttttgtatttttagtagagacagggtttcaccatgttggccaggatggtcttgaactcctcacctcaagtgattcacccgcctcagcctcccaaaatgctgcggttacaggcgagagcccccactcccagcctaccatagggtttt
i colAng1.NW_012115566v1   C 0 I 5692
e dasNov3.JH561790             49053 1991 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25893432 3813 +  26524999 I
e saiBol1.JH378348            221817 7212 -    375362 I
e otoGar3.GL873742            700249   0 +   2232465 I
e aotNan1.NW_018494050v1      159744 5168 -    285216 I
e cebCap1.NW_016108108v1      221740 6283 -    373274 I
e calJac3.chr4             171396557 5400 - 171630274 I
e manLeu1.NW_012104165v1     1989239 7158 +   2316924 I
e chlSab2.chr17             28311115 2887 -  71996105 I
e cerAty1.NW_012001495v1     1863118 8238 -   2157725 I
e macNem1.NW_012011356v1     1988757 11051 -   2996164 I
e macFas5.chr4              29012629 6989 - 170955103 I
e rheMac8.chr4              29351565 7183 + 172585720 I
e nomLeu3.chr1a             74178689 1218 + 122973662 I

a score=10248.000000
s hg38.chr6_GL000254v2_alt    160495 27 +   4827813 Ttttatttatttatttatttatttatt
s panTro5.chr6              29141646 27 + 175400573 atttatttatttatttatttatttatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29375855 27 + 173848474 atttatttatttatttatttatttatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5176256 27 +   6154872 attaattaattaatttatttattatta
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH561790             49053 1991 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25893432 3813 +  26524999 I
e saiBol1.JH378348            221817 7212 -    375362 I
e otoGar3.GL873742            700249  0 +   2232465 I
e aotNan1.NW_018494050v1      159744 5168 -    285216 I
e cebCap1.NW_016108108v1      221740 6283 -    373274 I
e calJac3.chr4             171396557 5400 - 171630274 I
e colAng1.NW_012115566v1     1875165 5692 -   3067355 I
e manLeu1.NW_012104165v1     1989239 7158 +   2316924 I
e chlSab2.chr17             28311115 2887 -  71996105 I
e cerAty1.NW_012001495v1     1863118 8238 -   2157725 I
e macNem1.NW_012011356v1     1988757 11051 -   2996164 I
e macFas5.chr4              29012629 6989 - 170955103 I
e rheMac8.chr4              29351565 7183 + 172585720 I
e nomLeu3.chr1a             74178689 1218 + 122973662 I

a score=1928.000000
s hg38.chr6_GL000254v2_alt    160522 4 +   4827813 tatt
s panTro5.chr6              29141673 4 + 175400573 tatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29375882 4 + 173848474 tatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5176283 4 +   6154872 ttat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74179907 4 + 122973662 TAtt
i nomLeu3.chr1a            I 1218 C 0
e dasNov3.JH561790             49053 1991 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25893432 3813 +  26524999 I
e saiBol1.JH378348            221817 7212 -    375362 I
e otoGar3.GL873742            700249 0 +   2232465 I
e aotNan1.NW_018494050v1      159744 5168 -    285216 I
e cebCap1.NW_016108108v1      221740 6283 -    373274 I
e calJac3.chr4             171396557 5400 - 171630274 I
e colAng1.NW_012115566v1     1875165 5692 -   3067355 I
e manLeu1.NW_012104165v1     1989239 7158 +   2316924 I
e chlSab2.chr17             28311115 2887 -  71996105 I
e cerAty1.NW_012001495v1     1863118 8238 -   2157725 I
e macNem1.NW_012011356v1     1988757 11051 -   2996164 I
e macFas5.chr4              29012629 6989 - 170955103 I
e rheMac8.chr4              29351565 7183 + 172585720 I

a score=-2857.000000
s hg38.chr6_GL000254v2_alt    160526 13 +   4827813 tatttatttatta
s panTro5.chr6              29141677  2 + 175400573 ta-----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29375886 10 + 173848474 tatttattta---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5176287  2 +   6154872 ta-----------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74179911 13 + 122973662 tctttttcttttt
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29019618 13 - 170955103 tatttttcttttt
i macFas5.chr4             I 6989 C 0
e dasNov3.JH561790             49053 1991 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25893432 3813 +  26524999 I
e saiBol1.JH378348            221817 7212 -    375362 I
e otoGar3.GL873742            700249  0 +   2232465 I
e aotNan1.NW_018494050v1      159744 5168 -    285216 I
e cebCap1.NW_016108108v1      221740 6283 -    373274 I
e calJac3.chr4             171396557 5400 - 171630274 I
e colAng1.NW_012115566v1     1875165 5692 -   3067355 I
e manLeu1.NW_012104165v1     1989239 7158 +   2316924 I
e chlSab2.chr17             28311115 2887 -  71996105 I
e cerAty1.NW_012001495v1     1863118 8238 -   2157725 I
e macNem1.NW_012011356v1     1988757 11051 -   2996164 I
e rheMac8.chr4              29351565 7183 + 172585720 I

a score=-1997.000000
s hg38.chr6_GL000254v2_alt    160539 2 +   4827813 tt-
s nomLeu3.chr1a             74179924 2 + 122973662 ct-
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29019631 1 - 170955103 --t
i macFas5.chr4             C 0 I 1
s colAng1.NW_012115566v1     1880857 2 -   3067355 -tt
i colAng1.NW_012115566v1   I 5692 C 0
e dasNov3.JH561790             49053 1991 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25893432 3813 +  26524999 I
e saiBol1.JH378348            221817 7212 -    375362 I
e otoGar3.GL873742            700249 0 +   2232465 I
e aotNan1.NW_018494050v1      159744 5168 -    285216 I
e cebCap1.NW_016108108v1      221740 6283 -    373274 I
e calJac3.chr4             171396557 5400 - 171630274 I
e manLeu1.NW_012104165v1     1989239 7158 +   2316924 I
e chlSab2.chr17             28311115 2887 -  71996105 I
e cerAty1.NW_012001495v1     1863118 8238 -   2157725 I
e macNem1.NW_012011356v1     1988757 11051 -   2996164 I
e rheMac8.chr4              29351565 7183 + 172585720 I
e gorGor5.CYUI01015250v1     5176289 0 +   6154872 C
e panPan2.chr6              29375896 0 + 173848474 C
e panTro5.chr6              29141679 0 + 175400573 C

a score=632806.000000
s hg38.chr6_GL000254v2_alt    160541 172 +   4827813 ttttttgagacggagtctcactctgttgcccaggctggagtgcagcgg-gcaatgtcggctcactgcaagctccgcctcccgggtttaggcgattcttctacctcagcctcccgagtagctgggactacaagcacccaccaccacacccggctaattttttgtattttttaat
s panTro5.chr6              29141679 172 + 175400573 ttttttgagacggagtctcactctgttgcccaggctggagtgcagcgg-gcaatgtcggctcactgcaagctccgcctcccaggtttaggcgattcttctacctcagcctcccgagtagctgggactacaagcgcccaccaccacacccggctaattttttgtattttttaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29375896 172 + 173848474 ttttttgagacggagtctcactctgttgcccaggctggagtgcagcgg-gcaatgtcggctcactgcaagctccgcctcccgggtttaggcgattcttctacctcagcctccccagtagctgggactacaagcgcccaccaccacacccggctaattttttgtatttttaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5176289 170 +   6154872 ttttttgagacagagtctcactc--ttgcccaggctggagtgcagcag-gcaatgtcggctcactgcaagctccacctcccgggtttaggcgattcttctacctcagcctcccgagtagctgggactacaagcgcccaccaccacacccggctaattttttgtattttttaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74179926 154 + 122973662 ttttttgagacagagtctcgctcagtcgcccaagttggagtgcagtggcgcgatctcggttcactgcaaccttcgcctcccgggttcaagcgattcctctgcctcagcctccagagtagctgggattataggcgtgcgccaccacacccgacta-------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29358748 154 + 172585720 tttttggagaccgagtctcgctctgttgcccaagttggagtgcagtggtgccatctcggctcactgcaacgttcgcctccggggttcaagcgatctccctgcctcagcctcccgagtagctgggattataggcgtgcgccaccacatccgacta-------------------
i rheMac8.chr4             I 7183 C 0
s macFas5.chr4              29019633 154 - 170955103 tttttggagaccgagtctcgctctgttgcccaagttggagtgcagtggtgcgatctcggctcactgcaacgttcacctccggggttcaagcgatctccctgcctcagcctcccgagtagctgggattataggcgtgcaccaccacatccgacta-------------------
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     1999808 154 -   2996164 tttttggagaccgagtctcgctctgttgcccaagttggagtgcagtggtgccatctcggctcactgcaacgttcgcctccggggttcaagcgatctccctgcctcagcctcccgagtagctgggattataggcgtgcgccaccacatccgacta-------------------
i macNem1.NW_012011356v1   I 11051 C 0
s cerAty1.NW_012001495v1     1871356 154 -   2157725 tttttggagaccgagtctcgctctgttgcccaagttggagtgcagtggtgcgatctcggctcactgcaacgttcgcctccggggttcaagcgatctccctgcctcagcctcccgagtagctaggattataggcgtgcgccaccacatccgacta-------------------
i cerAty1.NW_012001495v1   I 8238 C 0
s manLeu1.NW_012104165v1     1996397 160 +   2316924 tttttggagaccgagtctcgctctgttgcccaagttggagtgcagtggtgcgatctcggctcactgcaacgttcgcctccggggttcaagcgatctccctgcctcagcctcccgagtagctgggattataggcgtgcgccaccacatccgactaattttt-------------
i manLeu1.NW_012104165v1   I 7158 C 0
s colAng1.NW_012115566v1     1880859 160 -   3067355 tttttggagacagagtctccctctgtcgcccaagttggagtgcagtggtgcgatctcggctcactgcaacgttcgcctccggggttcaagcgatctccctgcctcagcctcccgagtagctgggattataggcgtgcaccaccacacccgacta---------attttt----
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             49053 1991 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25893432 3813 +  26524999 I
e saiBol1.JH378348            221817 7212 -    375362 I
e otoGar3.GL873742            700249   0 +   2232465 I
e aotNan1.NW_018494050v1      159744 5168 -    285216 I
e cebCap1.NW_016108108v1      221740 6283 -    373274 I
e calJac3.chr4             171396557 5400 - 171630274 I
e chlSab2.chr17             28311115 2887 -  71996105 I

a score=351930.000000
s hg38.chr6_GL000254v2_alt    160713 71 +   4827813 atttttagtaga-gacggggtttcactgtgttagccaagatggtctcaatctcctgacctc--gtgatccgccc
s panTro5.chr6              29141851 71 + 175400573 atttttagtaga-gacggggtttcactgtgttagccaagatggtctcaatctcctgacctc--gtgatccgccc
i panTro5.chr6             C 0 I 6342
s panPan2.chr6              29376068 71 + 173848474 atttttagtaga-gacggggtttcactgtgttagccaagatggtctcaatctcctgacctc--gtgatccgccc
i panPan2.chr6             C 0 I 6334
s gorGor5.CYUI01015250v1     5176459 71 +   6154872 atttttagtaga-gacggggtttcactgtgttagccaagatggtcttagtctcctgacctc--gtgatccgccc
i gorGor5.CYUI01015250v1   C 0 I 6388
s nomLeu3.chr1a             74180080 74 + 122973662 atttttagtagaggacagggtttcaccatgttggccaggctggtctcgaactcctgagctcaggtgatccacca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29358902 74 + 172585720 atttttagtagaggacagggtttaaccatgttggccaggctggtctcgaactcctgatctcaggtgatccgccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29019787 74 - 170955103 atttttagtagaggacagggtttaaccatgttggccaggctggtctcgaactcctgatctcaggtgatccgccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     1999962 74 -   2996164 atttttagtagaggacagggtttaaccatgttggccaggctggtctcgaactcctgatctcaggtgatccgccc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1871510 74 -   2157725 atctttagtagaggacagggtttaaccatgttggccaggctggtctcgaactcctgatctcaggtgatccgccc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28314002 74 -  71996105 atttttagtagaggacagggtttaaccatgttggccaggctggtctcgaactcctgacctcaggtgatccgccc
i chlSab2.chr17            I 2887 C 0
s manLeu1.NW_012104165v1     1996557 68 +   2316924 ------agtagaggacagggtttaaccatgttggccaggctggtctcgaactcctgatctcaggtgatccgccc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1881019 68 -   3067355 ------agtagaggacagggtttaaccatgttggccaggctggtctcgaactcttgacctcaggtgatccgccc
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             49053 1991 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25893432 3813 +  26524999 I
e saiBol1.JH378348            221817 7212 -    375362 I
e otoGar3.GL873742            700249  0 +   2232465 I
e aotNan1.NW_018494050v1      159744 5168 -    285216 I
e cebCap1.NW_016108108v1      221740 6283 -    373274 I
e calJac3.chr4             171396557 5400 - 171630274 I

a score=311858.000000
s hg38.chr6_GL000254v2_alt    160784 54 +   4827813 gcctcggcctcccaaagtgctgggatt-acaggcctgagccactgcacccggccA
s panTro5.chr6              29148264 54 + 175400573 gcctcggcctcccaaagtgctgggatt-acaggcctgagccactgcacccggccA
i panTro5.chr6             I 6342 C 0
s panPan2.chr6              29382473 54 + 173848474 gcctcggcctcccaaagtgctgggatt-acaggcctgagccactgcacccggccA
i panPan2.chr6             I 6334 C 0
s gorGor5.CYUI01015250v1     5182918 54 +   6154872 gcctcggcctcccaaagtgctgggatt-acaggcgtgagccactgcacccggccA
i gorGor5.CYUI01015250v1   I 6388 C 0
s nomLeu3.chr1a             74180154 54 + 122973662 gcctcggcctcccaaagtgctgggatt-acaggcgtgacccactgcacgcggccA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29358976 54 + 172585720 gcctcagcctcccaaagtgctgggatt-acaggtgtgagccactgtacccggcca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29019861 54 - 170955103 gcctcagcctcccaaagtgctgggatt-acaggtgtgagccactgtacccggcca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2000036 54 -   2996164 gcctcagcctcccaaagtgctgggatt-acaggtgtgagccactgtacccggcca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1871584 54 -   2157725 gcctcagcctcccaaagtgctgggatt-acaggtgtgagccactgtacccggcca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28314076 54 -  71996105 gcctcagcctcccaaagtgctgggatt-acaggtgtgagccactgtacccggcca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1996625 54 +   2316924 gcctcagcctcccaaagtgctgggatt-acaggtgtgagccactgtacctggcca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1881087 55 -   3067355 gcctcagcctcccaaagtgctgggattaacaggtgtgagccactgcccccggcca
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             49053 1991 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25893432 3813 +  26524999 I
e saiBol1.JH378348            221817 7212 -    375362 I
e otoGar3.GL873742            700249  0 +   2232465 I
e aotNan1.NW_018494050v1      159744 5168 -    285216 I
e cebCap1.NW_016108108v1      221740 6283 -    373274 I
e calJac3.chr4             171396557 5400 - 171630274 I

a score=7800.000000
s hg38.chr6_GL000254v2_alt    160838 1 +   4827813 G
s panTro5.chr6              29148318 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29382527 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5182972 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74180208 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29359030 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29019915 1 - 170955103 g
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2000090 1 -   2996164 g
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1871638 1 -   2157725 g
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28314130 1 -  71996105 g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1996679 1 +   2316924 g
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1881142 1 -   3067355 g
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1536699 1 -   2232465 g
i otoGar3.GL873742         I 4381 C 0
e dasNov3.JH561790             49053 1991 -    302817 I
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25893432 3813 +  26524999 I
e saiBol1.JH378348            221817 7212 -    375362 I
e aotNan1.NW_018494050v1      159744 5168 -    285216 I
e cebCap1.NW_016108108v1      221740 6283 -    373274 I
e calJac3.chr4             171396557 5400 - 171630274 I

a score=711022.000000
s hg38.chr6_GL000254v2_alt    160839 124 +   4827813 CAATATTTCTTCTGTAAAAGAAAAGAATAAGTGTTCCacatggaaagaacccaagatatattaagtgaaaa-atgtcata-----------------gcatgactacatttctgttaaaaaaaa------aaaaacaaaatgtt-----atat----
s panTro5.chr6              29148319 123 + 175400573 CAATATTTCTTCTGTAAAAGAAAAGAATAAGTGTTCCACATGGAAAGAACCCAAGATATATTAAGTGAAAA-ATGTCATA-----------------GCATGACTATATTTCTGTTAAAAAAAA------AAAA-CAAAATGTT-----ATAT----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29382528 123 + 173848474 CAATATTTCTTCTGTAAAAGAAAAGAATAAGTGTTCCACATGGAAAGAACCCAAGATATATTAAGTGAAAA-ATGTCATA-----------------GCATGACTATATTTCTGTTAAAAAAAA------AAAA-CAAAATGTT-----ATAT----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5182973 129 +   6154872 CAATATTTCTTCTGTAAAAGAAAAGAATAAGTGTTCCACATGGAAAGAACCCAAGATATATTAAGTGAAAA-ATGTCAGA-----------------GCATGACTACATTTCTGTTAAAAAAAACAAAACAAAA-CAAAATGTT-----ATAT----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74180209 126 + 122973662 CAATATTTCTTCTGTAAGAGAAAAGAATAAGTGTTCCATATGGAAAGAACCCAAGATATACTAAGTGAAAA-ATGTCAGA-----------------GCATGACTACATTTCTGTTaaaaaaaa---aaaaaaa-caaaaTGTT-----ATAT----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29359031 138 + 172585720 caatatttcttttgtaagagaaaagaatgagtgttccacatggaaagaacccaagatacattaagtgaaaa-atgtcatagaaccctatgtatagtggtatgactacatttctgt--aaaaaaa------accc-caaaatgtt-----atac----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29019916 138 - 170955103 caatatttcttttgtaagagaaaagaatgagtgttccacatggaaagaacccaagatacattaagtgaaaa-atgtcatagaaccctatgtatagtggtatgactacatttctgt--aaaaaaa------aacc-caaaatgtt-----atac----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2000091 138 -   2996164 caatagttcttttgtaagggaaaagaatgagtgttccacatggaaagaacccaagatacattaagtgaaaa-atgtcatagaaccctatgtatagtggtatgactacatttctgt--aaaaaaa------aacc-caaaatgtt-----atac----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1871639 137 -   2157725 caatatttcttttgtaagagaaaagaatgagtgttccacatggaaagaacccaagatacattaagtgaaaa-atgtcatagaaccctatgtatagtagtatgactacatttctgt--aaaaaaa------a-cc-caaaatgtt-----atac----
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28314131 137 -  71996105 caatatttcttttgtaagagaaaagaatgagtgttgcacatggaaagaacccaagatacattaagtgaaaa-atgtcatagaaccctatgtatagtagtatgactacatttctgt---aaaaaa------aacc-caaaatgtt-----atac----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1996680 138 +   2316924 caatatttcttttgtaagagaaaagaatgagtgttccacatggaaagaacccaagatacattaagtgaaaa-atgtcatagaaccctatgtatagtagtatcactacatttctgt--aaaaaaa------aacc-caaaatgtt-----atac----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1881143 136 -   3067355 caatatttcttttgtaagagaaaagaatgagtgttctacatggaaagaacccaagatatattaagtgaaaa-atgtcatagaaccctatgtatagtagtatgactacatttctgt--aaaaaaa--------cc-caaaatgtt-----atac----
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1536700 129 -   2232465 cagtatttcctttataaggaaaaagaatgagggtttcacat-caaagagcccatgaaatg--aagggaaaataggtcagagaactgtttt-------ttatgattctatttctgt-------aa------aaca-caaaatactaacgaatac----
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             51044 134 -    302817 caatattttctttgtaaataaagaaaatgagtgttcacagggaaaagattccaagaaatgataagtgaaaaaaaattagaaaata----gtattatcgtatgac-----atttgt---aaaaaa------aaca-aaaaacgtt----tataattgc
i dasNov3.JH561790         I 1991 C 0
e proCoq1.NW_012147953v1      946030 21142 -   3516910 I
e canFam3.chr35             25893432 3813 +  26524999 I
e saiBol1.JH378348            221817 7212 -    375362 I
e aotNan1.NW_018494050v1      159744 5168 -    285216 I
e cebCap1.NW_016108108v1      221740 6283 -    373274 I
e calJac3.chr4             171396557 5400 - 171630274 I

a score=327640.000000
s hg38.chr6_GL000254v2_alt    160963 39 +   4827813 atatatgcgaatgcagagaaaaaagaaatgt-aaaaaata
s panTro5.chr6              29148442 39 + 175400573 ATATATGGGAATGCAGAGAAAAAAGAAATGT-AAAAAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29382651 39 + 173848474 ATATATGCGAATGCAGAGAAAAAAGAAATGT-AAAAAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5183102 39 +   6154872 ATATATGCGAATGCAGAGAAAAAAGAAATGT-AAAAAATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74180335 39 + 122973662 ATATATGCGAATGCAGAGAAAAAAGAACTGT-AAAAAATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29359169 39 + 172585720 atatatgcgaatgcagagaaaaaagaactgt-aagaaata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29020054 39 - 170955103 atatatgcgaatgcagagaaaaaagaactgt-aagaaata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2000229 39 -   2996164 atatatgcgaatgcagagaaaaaagaactgt-aagaaata
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1871776 39 -   2157725 atatatgcgaatgcagagaaaaaagaactgt-aagaaata
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28314268 39 -  71996105 atatatgcgaatgcagagaaaaaagaactgt-aagaaata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1996818 39 +   2316924 atatatgcgaatgcagagaaaaaagaactgt-aagaaata
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1881279 39 -   3067355 atatatgcgaatgcagagaaaaaagaactgt-aagaaata
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012147953v1      967172 39 -   3516910 atatatgtgaatgcagagaaaaaagaactgt-aagaaata
i proCoq1.NW_012147953v1   I 21142 C 0
s otoGar3.GL873742           1536829 38 -   2232465 atatatgcaaatg-agagatgaaagaatggg-aaaaaata
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             51178 40 -    302817 atatatatgaacgcaaagaaaaaagaactgtaaagaaata
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25893432 3813 +  26524999 I
e saiBol1.JH378348            221817 7212 -    375362 I
e aotNan1.NW_018494050v1      159744 5168 -    285216 I
e cebCap1.NW_016108108v1      221740 6283 -    373274 I
e calJac3.chr4             171396557 5400 - 171630274 I

a score=3241135.000000
s hg38.chr6_GL000254v2_alt    161002 305 +   4827813 caataaatttttcacggtgattacatttgCGAGAGGAACGTACAGCTTTCATATTTCAT-------------TCAATGGTTAAAA----TGGTACTCAATTTTGACT--G-----ACAAAACGGTAATG--------------ATC-------AGATGCCAAAACGAGTGTGAATGTGCATAATTTACGAAAGACATTTTTGAGAACTGGTTACATGAGTTTT--GAAAATAGGAGAGC--AGAGGACCTGTGTAAGA-TTTTTAAAGAGACTGCACTGTCACGAGCCACAGGGTTGTG-AGATTGGTAGGAAAGTGCTCCAGGAAATATCT-AGGGGAGGGCTTGGATCTGAGACA
s panTro5.chr6              29148481 305 + 175400573 CAATAAATTTTTCACGGTGATTACATTTGCGAGAGGAACGTACAGCTTTCATATTTCAT-------------TCAATGGTTAAAA----TGGTACTCAATTTTGACT--G-----ACAAAACGGTAATG--------------ATC-------AGATGCCAAAACGAGTGTGAATGTGCATAATTTACGAAAGACATTTTTGAGAACTGGTTACATGAGTTTT--GAAAATAGGAGAGC--AGAGGACCTGTGTAAGA-CTTTTAAAGAGACTGCACTGTCACGAGCCACAGGGTTGTG-AGATTGGTAGGAAAGTGCTACAGGAAGTATCT-AGGGGAGGGCTTGGATCTGAGACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29382690 305 + 173848474 CAATAAATTTTTCACGGTGATTACATTTGCGAGAGGAACGTACAGCTTTCATATTTCAT-------------TCAATGGTTAAAA----TGGTACTCAATTTTGACT--G-----ACAAAACGGTAATG--------------ATC-------AGATGCCAAAACGAGTGTGAATGTGCATAATTTACGAAAGACATTTTTGAGAACTGGTTACATGAGTTTT--GAAAATAGGAGAGC--AGAGGACCTGTGTAAGA-CTTTTAAAGAGACTGCACTGTCACGAGCCACAGGGTTGTG-AGATTGGTAGGAAAGTGCTACAGGAAATATCT-AGGGGAGGGCTTGGATCTGAGACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5183141 305 +   6154872 CAATAAATTTTTCACGGTGATTACATTTGCGAGAGGAACGTACAGCTTTCATATTTCAT-------------TCAATGGTTAAAA----TGGTACTCGATTTTGACT--G-----ACAAAACGGTAATG--------------ATC-------AGATGCCAAAACGAGTGTGAATGTGCATAATTTACGAAAGACATTTTTGAGAACTGGTTACATGAGTTTT--GAAAATAGGAGAGC--AGAGGACCTGTGTAAGA-TTTTTAAAGAGACTGCACTGTCACGAGCCACAGGGTTGTG-AGATTGGTAGGAAAGTGCTACAGGAAATATCT-AGGGGAGGGCTTGGATCTGAGACG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74180374 307 + 122973662 CAATAAATTTTTCACGGTGATTACATTTGCGAGAGGAAGGTACAGCTTTCGTATTTCAT-------------TCAATGGTTAAAA----TGGTACTCAATTTTGACTGAG-----ACAAAACGGTAATG--------------ATC-------AGATGCCAAAACGAGTGTGAATGTGCGTAATTTACGAAAGACATTTTTGAGAACTGGTTACATGAGTTTT--GAAAATAGGAGAGC--AGAGGACCTGTGTAAGA-TTTTTAAAGAGACTGCACTGTCACAAGCCACACGGTTGTG-AGATTGGTAGGAAAGTGCTACAGGAAATATCT-AGGGTAGCGCTTGTATCTGAGACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29359208 301 + 172585720 caataaatttttcacggtgattacatttgggAGAGGAAGGTACAGCTTTCATATTTCAT-------------TCAGTGGTTAAAA----TGGTACTCAATTTTGACT--G---------AACGGTAATG--------------ATC-------AGATGCCGAAACGAGTGTGAATGTGCATAGTTTACGAAAGACATTTTTGAGAACGGGCTACATGAGTTTT--GAAAATAGGAGAGC--AGAGGACCTGTGTAAGA-TTTTTAAAGACACTGCACTGTCACGAGCCACAGGGCTGTG-AGATTGGTAAGAAAGTGCTACAGCAAGTATCC-AGGGGAGGGCTTGGATCTGAGACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29020093 301 - 170955103 caataaatttttcacggtgattacatttgggagaggaaggTACAGCTTTCATATTTCAT-------------TCAGTGGTTAAAA----TGGTACTCAATTTTGACT--G---------AACGGTAATG--------------ATC-------AGATGCCGAAACGAGTGTGAATGTGCATAGTTTACGAAAGACATTTTTGAGAACGGGCTACATGAGTTTT--GAAAATAGGAGAGC--AGAGGACCTGTGTAAGA-TTTTTAAAGACACTGCACTGTCACGAGCCACAGGGCTGTG-AGATTGGTAAGAAAGTGCTACAGCAAGTATCC-AGGGGAGGGCTTGGATCTGAGACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2000268 292 -   2996164 caataaatttttcacggtgattacatttgggAGAGGAAGGTACAGCTTTCATATTTCAT-------------TCAGTGGTTAAAA----TGGTACTCAATTTTGACT--G---------AACGGTAATC--------------ATC-------AGATGCCGAAACGAGTATGAATGTGCATAGTTTACGAAAGACATTTTTGAGAACGGGCTACATGAGTTTT--GA---------AGC--AGAGGACCTGTGTAAGA-TTTTTAAAGACACTGCACTGTCACGAGCCACAGGGCTGTG-AGATTGGTAAGAAAGTGCTACAGCAAGTATCC-AGGGGAGGGCTTGGATCTGAGACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1871815 301 -   2157725 caataaatttttcacggtgattacatttgggagaggaaGGTACAGCTTTCATATTTCAT-------------TCATTGGTTAAAA----TGGTACTCAATTTTGACT--G---------AACGGTAATA--------------ATC-------AGATGCCGAAACGAGTGTGAATGTGCATAGTTTACGAAAGACATTTTTGAGAACGGGCTACATGAGTTTT--GAAAATAGGAGAGC--AGAGGACCTGTGTAAGA-TTTTTAAAGAGACTGCACTGTCACGAGCCACAGGGCTGTG-AGATTGGTAAGAAAGTGCTACAGCAAGTATCC-AGGGGAGGGCTTGGATCTGAGACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28314307 302 -  71996105 caataaatttttcacggtgattacatttgggagaggaaggTACAGCTTTCATATTTCAT-------------TCAGTGGTTAAAA----TGGTACTCAATTTTGACT--G---------AACGGTAATG--------------ATC-------AGATGCCGAAACGAGTGTGAATGTGCATAGTTTACGAAAGACATTTTTGAGAACGGGCTACATGAGTTTT--GAAAATAGGAGAGC--AGAGGACCTGTGTAAGATTTTTTAAAGAGACTGCACTGTCACGAGCCACAGGGCTGTG-AGATTGGTAAGAAAGTGCTACAGCAAGTATCC-AGGGGAGGGCTTGGATCTGAGACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1996857 301 +   2316924 caataaatttttcacggtgattacatttgggAGAGGAAGGTACAGCTTTCATATTTCAT-------------TCAGTGGTTAAAA----TGGTACTCAATTTTGACT--G---------AACGGTAATG--------------ATC-------AGATGCCGAAACGAGTGTGAATGTGCATAGTTTACGAAAGACATTTTTGAGAACGGGCTACATGAGTTTT--GAAAATAGGAGAGC--AGAGGACCTGTGTAAGA-TTTTTAAAGGGACTGCACTGTCCGGAGCCACAGGGCTGTG-AGATTGGTAAGAAAGTGCTACAGCAAGTATCC-AGGGGAGGGCTTGGATCTGAGACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1881318 301 -   3067355 caataaatttttcacggtgattacatttgggagaggaaGGTACAGCTTTCATATTTCAT-------------TCAGTGGTTAAAA----TGGTACTCAATTTTGACT--G---------AACAGTAATG--------------ATC-------AGATGCCGAAACGAGTGTGAATGTGCATAGTTTACGAAAGACATTTTTGAGAACTGGCTACATGAGTTTT--GAAAATAGGAGAGC--AGAGGACCTGTGTAAGA-TTTTTAAAGAGACTGCACTGTCACGAGCCACAGGGCTGTG-AGATTGGTAAGAAAGTGCTACAGGAAGTATCC-AGGGGAGGGCTTGGATCTGAGACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171401957 303 - 171630274 CAATGAATTTT------TGATTACGTTTGGGA---GAAGGTACAGTTTTCCTATTTCAT-------------TCAGTGGTT-TAA----TGGTACTCAATGTTGACT--GAAGAGACAACACGGTAATG--------------ATG-------AGATGTCAAAACGAGTGTGAATGTGCGTAATTTATGAAAGGCATTTTTGAGGACTAGTTACATGAATTTTGAGAAAATAGGAGAGC--AGAGAACCTGTGTAAGA-TTTTTAAGCAGACTGCACTGTCATGAGCCATAGGGTTGTG-AGGCTGGGAGGAAAGCGCTTCCGGAAGTATCCAAGGGGAGGGCGTGGATCTGGCACA
i calJac3.chr4             I 5400 C 0
s saiBol1.JH378348            229029 310 -    375362 CAGTAAATTTCTGACGGTGATGATGTTTGGGAGAGGAAGGCACAGCTTTCCTATTTCAT-------------TCAGGGGTT-CCA----TGGTACTCGATTTTGACT--GAACAGACAACACGGTGATG--------------ATG-------AGATGTCAAAACGAGTGTGAATGCGCGAAAGTGACGAGAGGCATTTCTGAGAACTAGTTACAGGAGTTCT--TAAAACAGGAGAGC--GGAGAACCTGCGTAGGA-GTTCGGAGCGGACCGCACTGTCACGAGCCACAGGGTTGTG-AGGCTGAGAGGCAAGCGCTTCCGGAAGTGTCCAAGGGAAGGGCCTGGAGCCGGCACA
i saiBol1.JH378348         I 7212 C 0
s cebCap1.NW_016108108v1      228023 310 -    373274 CAATAAACTTTTGACGGTGATTACGTTTGGGAGAGGAAGGTACAGCTTTCCTATTTCAT-------------TCAGTGGTT-AAA----TGGTACTCAATTTTGACT--GAAGAGACAACACGGTAATG--------------ATG-------AGATGTCAAAACGAGTGTGAAAGTGCTTAATTTACGAAAGGCATTTTTGAGAACTAGGTACATGAGTTTT--GAAAACAGGAGAAC--AGAGAACCTGTGTAAGA-CTTCTACGCAGACTGCACTGTCGGGAGCCACAGGGTCGTG-AGGCTGGGAGGAAAGTGCTTCCGGAAGCATCCGAGGGGACGGCGCGGATCCGGCACA
i cebCap1.NW_016108108v1   I 6283 C 0
s aotNan1.NW_018494050v1      164912 312 -    285216 CAATAAATTTTTGACGGTGATTATGTTTGGGAGAGGAAGGTACAGCTTTCCTATTTCAT-------------TCAGTGGTT-AAA----TGGTACTCAATTTTGACT--GAAAAGACAACACGGTAATG--------------ATG-------AGATGTCAAAACGAGTGTGAATGTGCATAATTTACGAAAGGCATTTTTGAGAACTAGTTACATGAGTTTT--GAAAATAGGAGAGCAGAGAGAACCTGTGTAAGA-TTTTTAAGCAGACTGCACTGTCATGAGCCACAGGGTTGTG-AGGCTGGGAGGAAAGTGCTTCCGGAAGTATCCAAGGGGAGGGCGTGGATTTGGCCCA
i aotNan1.NW_018494050v1   I 5168 C 0
s proCoq1.NW_012147953v1      967211 299 -   3516910 ---caaattgttgatggcgactacttttgggAGAAGAAGGCGTAGCTTTAATATTTTAT-------------TCAGGAGTGAAAT----TGGTACTCAATTTTGACT--GAGTAAACAAAGCTATAATT--------------ATC-------AGATGCCAAAGCGAGTGTGAATATGTATAATTTACAAAGGAAACGTTTGCGAGCTAGTTCTGTGA--CTT--T----TGGGAGAGC--AA---ATCTGTGTAAGA-TTTTTTTAGACATCGCACTGTCGTGAGCCAGAGGACTGTAGACATTGGTAGGAAAGTGATACAGGAAGTATCC-AGGAGAGGGCTTGGATCTGAAACA
i proCoq1.NW_012147953v1   C 0 I 167
s otoGar3.GL873742           1536867 328 -   2232465 ---caaattgttgatggtaactacatttagAAGAGGAAGGCGGATCTTTGACATTTTAT-------------TCAGGAGTGAAAGAAAATGGTACTCAGTTTTCAGT--GAGTAGACAAAGCTGTAATTAAGACAGAGATGCCATCTTGACAAATACGCCAACGCGAGTGTGAATATGCATAATCTGCAAAGGAAACGCTTGAGAACTTATTCTGTGA--CTT--GAAAATAGGAGAGC--CAAGGATCTGTGTACGA---TTAAAAGAGATCGCACAGTTGCGAATCAGAGAGGAGTA-AGACTGGTAATAAAGTACTACAGAAAGCGTCC-AGAAGAGGGCTTGGATTTAAAGCA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             51218 226 -    302817 caataaac---------------cgttTGGG-GAAGAAGGTAACGTTGTTTTATTCTATACATTTGTGTGTAACAGGCGTTAAAA----TGGTACTCAGTTGTGACA--GAAGAGATAAAACAATAATA--------------ATC-------AGATGCCAACGTAAGCAGGGATGTGCATAAAGTGCGAAGGAAACGCCAG-----TACTCCCTCGACTTTT--GAG-------------AGTGGATCTGT---------------------GCGCTGCCCC-----------------A-----------------------------CC-AGGCGAGGGCCCGGGTCTGGGACA
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25893432 3813 +  26524999 I

a score=1353467.000000
s hg38.chr6_GL000254v2_alt    161307 171 +   4827813 -------CAGAGTGTGAGCCTGGTCGAGAAGCGGGAAAAGAACCCGC---CCGGAGCCCCTTCTCTCCATTCCC--TCGGCGAGGCAGGAAGCTATCTGCGTTCCGAATCCCGCGACATCAGGATTATCTCGCACTGCAGCACAGAGACCAATCACTAGTAACCTCTGCCTTTAATTAGGCGT
s panTro5.chr6              29148786 171 + 175400573 -------CAGAGTGTGAGCCTGGTCGAGAAGCGGGAAAAGAACCCGC---CCAGAGCCCCTTCTCTCCATTCCC--TCAGCGAGGCAGGAAGCTATCTGGGTTCCGAATCCCGCGACATCAGGATTATCTCGCATTGCAGCACAGAGACCAATCGCTAGTAATCTCTGCCTTTAATTAGGCGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29382995 171 + 173848474 -------CAGAGTGTGAGCCTGGTCGAGAAGCGGGAAAAGAACCCGC---CCAGAGCCCCTTCTCTCCATTCCC--TCAGCGAGGCAGGAAGCTATCTGGGTTCCGAATCCCGCGACATCAGGATTATCTCGCATTGCAGCACAGAGACCAATCGCTAGTAATCTCTGCCTTTAATTAGGCGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5183446 171 +   6154872 -------CAGAGTGTGAGCCTGGTCGAGAAGCGGGAAAAGAACCCGC---CCAGAGCCCCTTCTCTCCATTCCC--TCGGCGAGGCAGGAAGCTACCTGGGTTCCGAATCCCGCGACATCAGGATTATCTCGCATTGCAGCACAGAGACCAATCGCTAGTAATCTCTGCCTTTAATTAGGCGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74180681 169 + 122973662 -------CATAGTATGAGCCTGGTCGAGAAGCGGGAAAAGAACCCGC---CCAGCGCCCCTTCTATCCATTACC--TCCGCGAGGCAGGAAGCTACCTGAGTTCCGAATCCCGCGACATCCGGATTATCTCGCATTGTAGCACAGAGACCAATCGCTAGTAATCTCT--CTTTTATTGGGCGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29359509 168 + 172585720 -------CAGCGTGTG---CTGGTAGAGAAGCGGGAAAAGAATCCGC---CCAGAGCCCCTTCTCTCCATTCCC--TCGGCGAGGCAGGAAGCTACCTGGGTTCCGAATTCCACGACTTCCGGATTATCTCGCATTGCAGCACAGACACCAACCTCTAGTAATCTTTGCCATTTATTAGGCGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29020394 168 - 170955103 -------CAGCGTGTG---CTGGTCGAGAAGCGGGAAAAGAATCCGC---CCAGAGCCCCTTCTCTCCATTCCC--TCGGCGAGGCAGGAAGCTACCTGGGTTCCGAATTCCACGACTTCCGGATTATCTCGCATTGCAGCACAGACACCAACCTCTAGTAATCTTTGCCATTTATTAGGCGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2000560 168 -   2996164 -------CAGCGTGTG---CTGGTCGAGAAGCGGGAAAAGAATCCGC---CCAGAGCCCCTTCTCTCCATTCCC--TCGGCGAGGCAGGAAGCTACCTGGGTTCCGAATTCCACGACTTCCGGATTATCTCGCATTGCAGCACAGACACCAACCTCTAGTAATCTTTGCCATTTATTAGGCGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872116 171 -   2157725 -------CAGCGTGTGCCCCTGGTCGAGAAGCGGGAAAAGAATCCGC---CCAGAGCCCCTTCTCTCCATTCCC--TCGGCGAGGCAGGAAGCTACCTGGGTTCCGAATTCCACGACTTCCGGATTATCTCGCATTGCAGCACAGACACCAACCTCTAGTAATCTTTGCCATTTATTAGGCGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28314609 171 -  71996105 -------CAGCGTGTGCCCCTGGTCGAGAAGCGGGAAAAGAATGCGC---CCAGAGCCCCTTCTCTCCATTCCC--TCGGCGAGGCAGGAAGCTACCTGGGTTCCGAATCCCACGACTTCCGGATTATCTCGCATTGCAGCACAGACACCAACCTCTAGTAATCTCTGACATTTATTAGGCGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997158 171 +   2316924 -------CAGCGTGTGCCCCTGGTCGAGAAGCGGGAAAAGAATCCGC---CCAGAGCCCCTTCTCTCCATTCCC--TCGGCGAGGCAGGAAGCTACCTGGGTTCCGAATTCCACGACTTCTGGATTATCTCGCATTGCAGCACAGACACCAACCTCTAGTAATCTTTGCCATTTATTAGGCGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1881619 171 -   3067355 -------CAGCGTGTGAGCCTGGTGGAGAAGTGGGAAAAGAACTCGC---CCAGAGCCCCTTCTCTCCATTCCC--TGGGCGAGGCAGGAAGCTACCTGGGTTCCGAATCCCACGACTTCCGGATTATCTCGCATTGCAGCACAGACACCAACCTCTAGTAATATCTGCCATTTATTAGGCGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171402260 151 - 171630274 -------CTGCGTGTCAGCCTGGTCGAGGA-----------------------TAGCCCCTCCTCTCCATTCCC--TCGGCCAGGCCGGAAGCTACCTGGGTCCCGAATCTCGCTACTTCCGGATTATCTCGCCTTGCAGCACAGAGACCAACCGCTACTCATCTCTGCCTTTTATTGACTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            229339 150 -    375362 -------CAGCGTGTCAGCCTGGTGGAGAA-----------------------CAACCCCTTCCCGAC-CTCCC--TCGGCCAGGCCGGAAGCTCCCTGGGTCCCGAATCCCGCTACTTCCGGATTATCTCGCCTTGCCACACAGAGACCGACCGCTACTCATCTCTGCCTTTTATTGACTGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      228333 151 -    373274 -------CAGCGTGCCAGCCTGGTCGAGAA-----------------------CAGCCCCTTCTCTCCCTTCCC--TCAGCCAGGCCGGAAGCTACCTGGGTCCCGAATCTCGCTACTTCCGGATTATCTCGCCTTGCAGCACAGAGACCAACCGCTACTCATCTCTGCCTTTTATTGACTGT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      165224 150 -    285216 -------CAGCGTGTCAGCCTGGTCGAGAA-----------------------TAGCCCCTTCTCTCCATTCCC--TCGGTCAGGCCGGAAGCTACCTGGGTCCCGAATCTCGCTACTTCCGGATCATCTCGCCTTACAGCGCAGAGACCAACCGCTACTCATCTCTGCCTTTTATTG-CTGT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1537195  76 -   2232465 -------AAGTGGGTGGACCTTATGGAGAA---AGCAGGGAACATAG---TCATAGCCCCCTCTCCCCA-----------------------------------------------------------CCTGCACTGTGAGACAGAGA-----------------------------------
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             51444 166 -    302817 AAACGAGCAGAGT------CCGGCGGTGAAGCAG---------CCGCGAGCCGACGACCCTCCTCCGCCCTGCTCGCCCGCCGAGCACCAA--CACCCGCACTCCGCAGCTCGAGACTTCACGCTCCTCTCGCGATACAACCGGCAGGACAACCTGCGGCAACCCCCGCTCTTTAGTAGGCTT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      967510 167 -   3516910 I
e canFam3.chr35             25893432 3813 +  26524999 I

a score=2497.000000
s hg38.chr6_GL000254v2_alt    161478 1 +   4827813 T
s panTro5.chr6              29148957 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383166 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5183617 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74180850 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29359677 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29020562 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2000728 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872287 1 -   2157725 T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28314780 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997329 1 +   2316924 T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1881790 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171402411 1 - 171630274 G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            229489 1 -    375362 G
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      228484 1 -    373274 G
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      165374 1 -    285216 G
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      967677 1 -   3516910 T
i proCoq1.NW_012147953v1   I 167 C 0
s dasNov3.JH561790             51610 1 -    302817 T
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25893432 3813 +  26524999 I
e otoGar3.GL873742           1537271 0 -   2232465 C

a score=518575.000000
s hg38.chr6_GL000254v2_alt    161479 41 +   4827813 TTTTGGCCCA-----AATCTCGCGGCTTCGTAAAAATATCGCGATG
s panTro5.chr6              29148958 41 + 175400573 TTTTGGCCCA-----AATCTCGCGGCTTCGTAAAAATATCGCGATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383167 41 + 173848474 TTTTGGCCCA-----AATCTCGCGGCTTCGTAAAAATATCGCGATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5183618 41 +   6154872 TTTTGCCCCA-----AATCTCGCGGCTTCGTAAAAATATCGTGATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74180851 41 + 122973662 TTTTGCCCCA-----AATCTCGCGGCTTCGTAAAAATATCGCGATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29359678 41 + 172585720 TTTTACCCCA-----AATCTCGCGGCTTCGTAAAAATATCGCGATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29020563 41 - 170955103 TTTTACCCCA-----AATCTCGCGGCTTCGTAAAAATATCGCGATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2000729 41 -   2996164 TTTTACCCCA-----AATCTCGCGGCTTCGTAAAAATATCGCGATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872288 41 -   2157725 TTTTACCCCA-----AATCTCGCGGCTTTGTAAAAATATCGCGATG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28314781 41 -  71996105 TTTTACCCCA-----AGTCTCGCGGCTTCGTAAAAATATCGCGATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997330 41 +   2316924 TTTTACCCCA-----AATCTCGCGGCTTCGTAAAAATATCGCGATG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1881791 40 -   3067355 TTTT-CCCCA-----AATCTCGTGGCTTCGTAAAAATATCGCGATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171402412 41 - 171630274 TTTTGCCTCA-----AATCTCGCGGCTTCGTAAAAATATCGCGATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            229490 41 -    375362 TTTTGCCCCA-----AATCTCGCGGCTTCGTAAAAATATCGCGATA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      228485 41 -    373274 TTTTGCCCCA-----AATCTCGCGGCTGTGTAAAAATATCGCGATA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      165375 41 -    285216 TTTTGCCCCA-----AATCTCGCGACTTCGTAAAAATATCGCGATA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      967678 41 -   3516910 TTTTGCCTCA-----AATATCGCGGCTTCTTGAAAACAACGCGATA
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1537271 38 -   2232465 -TATGTACAG-----TACCTCACGACTGCC--AAACTGTCGCGAGG
i otoGar3.GL873742         C 0 I 110
s canFam3.chr35             25897245 41 +  26524999 TCTTGCACCA-----GAGATCTCGGCTTTCGAGACGTATCGCGATA
i canFam3.chr35            I 3813 C 0
s dasNov3.JH561790             51611 46 -    302817 TTTTTTCCCACCACGAATCTCGCGACTCCCATACGCTCTCGCGATG
i dasNov3.JH561790         C 0 C 0

a score=150541.000000
s hg38.chr6_GL000254v2_alt    161520 12 +   4827813 CTTCCGCTTTT-A
s panTro5.chr6              29148999 12 + 175400573 CTTCCGCTTTT-A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383208 12 + 173848474 CTTCCGCTTTT-A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5183659 12 +   6154872 CTTCCGCTTTT-A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74180892 12 + 122973662 CTTCCGCTTTT-A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29359719 12 + 172585720 CTTCCACTTTT-A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29020604 12 - 170955103 CTTCCACTTTT-A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2000770 12 -   2996164 CTTCCACTTTT-A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872329 12 -   2157725 CTTCCACTTTT-A
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28314822 12 -  71996105 CTTCCACTTTT-A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997371 12 +   2316924 CTTCCACTTTT-A
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1881831 12 -   3067355 CTTCCACTTTT-A
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171402453 12 - 171630274 CTTCCGCTTTT-A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            229531 13 -    375362 CTTCCGCTTTTCC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      228526 12 -    373274 CTTCCGCTTTT-A
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      165416 12 -    285216 CTTCCGCTTTT-A
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      967719 12 -   3516910 CTTCCGCTTTT-A
i proCoq1.NW_012147953v1   C 0 I 134
s canFam3.chr35             25897286 12 +  26524999 TTCTCGCTCTT-C
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             51657 12 -    302817 CTTCCTCGTTC-A
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1537309 110 -   2232465 I

a score=362880.000000
s hg38.chr6_GL000254v2_alt    161532 36 +   4827813 -ATGTTTTTAG---TTTGGACAAGCCCTTTGAGATAAATT
s panTro5.chr6              29149011 36 + 175400573 -ATGTTTTTAG---TTTGGACAAGACCTTTGAGATAAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383220 36 + 173848474 -ATGTTTTTAG---TTTGGACAAGACCTTTGAGATAAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5183671 36 +   6154872 -ATGTTTTTAG---TTTGGACAAGCCCTTTGAGATAAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74180904 36 + 122973662 -ATGTTTTTAG---TTTGGACAATCTCTTTGAGAAAAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29359731 36 + 172585720 -ATGTTTTTAG---TTTGGACAATCCCTTTGAGAAAAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29020616 36 - 170955103 -ATGTTTTTAG---TTTGGACAATCCCTTTGAGAAAAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2000782 36 -   2996164 -ATGTTTTTAG---TTTGGACAATCCCTTTGAGAAAAATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872341 36 -   2157725 -ATGTTTTTAG---TTTGGACAATCCCTTTGAGAAAAATT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28314834 36 -  71996105 -ATGTTTTTAG---TTTGGACAATCCCTTTGGGAAAAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997383 36 +   2316924 -ATGTTTTTAG---TTTGGACAATCCCTTTGAGAAAAATT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1881843 36 -   3067355 -ATGTTTTTAG---TTTGAACAATCCCTTTGAGAAAAATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171402465 36 - 171630274 -ATGTTTTCAG---TTTGGACAATCACTTTGAGAAAAATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            229544 36 -    375362 -AGGCTTTCAG---TTTGGACCATCACTTTGAGAAAAATT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      228538 36 -    373274 -ATGTTTTCAG---TGTGGACAATCACTTTGAGAAAAATT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      165428 36 -    285216 -ATGTCTTCAG---TTTGGACAATCACTTTGAGAAAAATT
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25897298 39 +  26524999 -ACGTTTTCGGTGTTTTTAACAGTCCCTGTAAGAAATCTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             51669 33 -    302817 CTGATTTTTAG---GGTTGGCG----CTATGGCAAAATTT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      967731 134 -   3516910 I
e otoGar3.GL873742           1537309 110 -   2232465 I

a score=2955.000000
s hg38.chr6_GL000254v2_alt    161568 1 +   4827813 T
s panTro5.chr6              29149047 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383256 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5183707 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74180940 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171402501 1 - 171630274 T
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            229580 1 -    375362 G
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      228574 1 -    373274 T
i cebCap1.NW_016108108v1   C 0 I 1
s aotNan1.NW_018494050v1      165464 1 -    285216 T
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25897337 1 +  26524999 T
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             51702 1 -    302817 T
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      967731 134 -   3516910 I
e otoGar3.GL873742           1537309 110 -   2232465 I
e colAng1.NW_012115566v1     1881879 0 -   3067355 C
e manLeu1.NW_012104165v1     1997419 0 +   2316924 C
e chlSab2.chr17             28314870 0 -  71996105 C
e cerAty1.NW_012001495v1     1872377 0 -   2157725 C
e macNem1.NW_012011356v1     2000818 0 -   2996164 C
e macFas5.chr4              29020652 0 - 170955103 C
e rheMac8.chr4              29359767 0 + 172585720 C

a score=1911.000000
s hg38.chr6_GL000254v2_alt    161569 1 +   4827813 A
s panTro5.chr6              29149048 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383257 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74180941 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s aotNan1.NW_018494050v1      165465 1 -    285216 A
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25897338 1 +  26524999 A
i canFam3.chr35            C 0 I 2468
s dasNov3.JH561790             51703 1 -    302817 A
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      967731 134 -   3516910 I
e saiBol1.JH378348            229581 0 -    375362 C
e otoGar3.GL873742           1537309 110 -   2232465 I
e cebCap1.NW_016108108v1      228575 1 -    373274 I
e calJac3.chr4             171402502 1 - 171630274 I
e colAng1.NW_012115566v1     1881879 0 -   3067355 C
e manLeu1.NW_012104165v1     1997419 0 +   2316924 C
e chlSab2.chr17             28314870 0 -  71996105 C
e cerAty1.NW_012001495v1     1872377 0 -   2157725 C
e macNem1.NW_012011356v1     2000818 0 -   2996164 C
e macFas5.chr4              29020652 0 - 170955103 C
e rheMac8.chr4              29359767 0 + 172585720 C
e gorGor5.CYUI01015250v1     5183708 0 +   6154872 C

a score=14449.000000
s hg38.chr6_GL000254v2_alt    161570 7 +   4827813 AAAGCCA
s panTro5.chr6              29149049 7 + 175400573 AAAGCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383258 7 + 173848474 AAAGCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5183708 7 +   6154872 AAAGCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74180942 7 + 122973662 AAAGCCG
i nomLeu3.chr1a            C 0 C 0
s cebCap1.NW_016108108v1      228576 7 -    373274 AAAGCCA
i cebCap1.NW_016108108v1   I 1 C 0
s aotNan1.NW_018494050v1      165466 7 -    285216 AAAGCCG
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             51704 7 -    302817 AAGATCA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      967731 134 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I
e saiBol1.JH378348            229581 0 -    375362 C
e otoGar3.GL873742           1537309 110 -   2232465 I
e calJac3.chr4             171402502 1 - 171630274 I
e colAng1.NW_012115566v1     1881879 0 -   3067355 C
e manLeu1.NW_012104165v1     1997419 0 +   2316924 C
e chlSab2.chr17             28314870 0 -  71996105 C
e cerAty1.NW_012001495v1     1872377 0 -   2157725 C
e macNem1.NW_012011356v1     2000818 0 -   2996164 C
e macFas5.chr4              29020652 0 - 170955103 C
e rheMac8.chr4              29359767 0 + 172585720 C

a score=5733.000000
s hg38.chr6_GL000254v2_alt    161577 3 +   4827813 ATT
s panTro5.chr6              29149056 3 + 175400573 Att
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383265 3 + 173848474 Att
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5183715 3 +   6154872 Att
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74180949 3 + 122973662 Att
i nomLeu3.chr1a            C 0 C 0
s cebCap1.NW_016108108v1      228583 3 -    373274 ATT
i cebCap1.NW_016108108v1   C 0 I 2
s aotNan1.NW_018494050v1      165473 3 -    285216 ATT
i aotNan1.NW_018494050v1   C 0 I 2
e dasNov3.JH561790             51711 0 -    302817 C
e proCoq1.NW_012147953v1      967731 134 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I
e saiBol1.JH378348            229581 0 -    375362 C
e otoGar3.GL873742           1537309 110 -   2232465 I
e calJac3.chr4             171402502 1 - 171630274 I
e colAng1.NW_012115566v1     1881879 0 -   3067355 C
e manLeu1.NW_012104165v1     1997419 0 +   2316924 C
e chlSab2.chr17             28314870 0 -  71996105 C
e cerAty1.NW_012001495v1     1872377 0 -   2157725 C
e macNem1.NW_012011356v1     2000818 0 -   2996164 C
e macFas5.chr4              29020652 0 - 170955103 C
e rheMac8.chr4              29359767 0 + 172585720 C

a score=144322.000000
s hg38.chr6_GL000254v2_alt    161580 175 +   4827813 Attttttttttttttttttt----gagacggagtgtcgctctgt-ccccaggctggagtgcagtggcgcgatcttggctcactgcacgctccgcctcccgggttcacgccattctcctgcctca--ttcccgagtagctgggactacaggcgcccgccaccacgcccagcta-ttttttttgt
s panTro5.chr6              29149059 177 + 175400573 cttttttttttttttttttt--ttgagacggagtgtcgctctgt-ccccaggctggagtgcagtggcgcgatcttggctcactgcaccctccgcctcccgggttcacgccattctcctgcctca--ttcccgagtagctgggactacaggcgcccgccaccacgcccagcta-ttttttttgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383268 176 + 173848474 tttttttttttttttttttt---tgagacggagtgtcgctctgt-ccccaggctggagtgcagtggcgcgatcttggctcactgcaccctccgcctcccgggttcacgccattctcctgcctca--ttcccgagtagctgggactacaggcgcccgccaccacgcccagcta-ttttttttgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5183718 170 +   6154872 cttttttttttttttt---------agacggagtgtcgctctgt-ccccaggctggagtgcagtggcgcgatcttggctcactgcacgctccgcctcccgggttcacgccattctcctgcctca--ttcccgagtagctgggactacaggcgcccgccaccacg-ccggctatttttttttgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74180952 181 + 122973662 ttttttttttttttttttttttttgagacggagtctcgctctgtcccccaggctggagtgcagtggcgcgatcttggctcactgcaagctctgcctcccgggttcacgccattctcctgcttcagcctcccgagtagctgggactacaggcgcccgccaccacgcccggcta--tttttttgt
i nomLeu3.chr1a            C 0 C 0
e dasNov3.JH561790             51711   0 -    302817 C
e proCoq1.NW_012147953v1      967731 134 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I
e saiBol1.JH378348            229581   0 -    375362 C
e otoGar3.GL873742           1537309 110 -   2232465 I
e aotNan1.NW_018494050v1      165476   2 -    285216 I
e cebCap1.NW_016108108v1      228586   2 -    373274 I
e calJac3.chr4             171402502   1 - 171630274 I
e colAng1.NW_012115566v1     1881879   0 -   3067355 C
e manLeu1.NW_012104165v1     1997419   0 +   2316924 C
e chlSab2.chr17             28314870   0 -  71996105 C
e cerAty1.NW_012001495v1     1872377   0 -   2157725 C
e macNem1.NW_012011356v1     2000818   0 -   2996164 C
e macFas5.chr4              29020652   0 - 170955103 C
e rheMac8.chr4              29359767   0 + 172585720 C

a score=49837.000000
s hg38.chr6_GL000254v2_alt    161755 54 +   4827813 atttttagtagagacgaggtttcaccgtgttagccagaatggtctcgat-ctcct
s panTro5.chr6              29149236 54 + 175400573 atttttagtagagacgaggtttcaccgtgttagccagaatggtctcgat-ctcct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383444 54 + 173848474 atttttagtagagacgaggtttcaccgtgttagccagaatggtctcgat-ctcct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5183888 54 +   6154872 atttttagtagagacgaggtttcaccgtgttagccagaatggtctcgat-ctcct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74181133 55 + 122973662 atttttagtagagacgaggtttcaccgtgttggccagaatggtctcgatactcct
i nomLeu3.chr1a            C 0 C 0
s dasNov3.JH561790             51711 29 -    302817 ACTTTTAAAAGAGATTAG-------------------------TTCGTT-CGCCT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      967731 134 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I
e saiBol1.JH378348            229581  0 -    375362 C
e otoGar3.GL873742           1537309 110 -   2232465 I
e aotNan1.NW_018494050v1      165476  2 -    285216 I
e cebCap1.NW_016108108v1      228586  2 -    373274 I
e calJac3.chr4             171402502  1 - 171630274 I
e colAng1.NW_012115566v1     1881879  0 -   3067355 C
e manLeu1.NW_012104165v1     1997419  0 +   2316924 C
e chlSab2.chr17             28314870  0 -  71996105 C
e cerAty1.NW_012001495v1     1872377  0 -   2157725 C
e macNem1.NW_012011356v1     2000818  0 -   2996164 C
e macFas5.chr4              29020652  0 - 170955103 C
e rheMac8.chr4              29359767  0 + 172585720 C

a score=65599.000000
s hg38.chr6_GL000254v2_alt    161809 71 +   4827813 gacctcgtgatccacccgtctcggcctcccaaagtgctaggattacaggcgtgagccaccgcgcccggTAC
s panTro5.chr6              29149290 71 + 175400573 gaccttgtgatccacccgtctcggcctcccaaagtgctaggattacaggcgtgagccaccgcgcccggTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383498 71 + 173848474 gaccttgtgatccacccgtctcggcctcccaaagtgctaggattacaggcgtgagccaccgcgcccggTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5183942 71 +   6154872 gacctcgtgatccacccgtctcggcctcccaaagtgttaggattacaggcgtgagccaccgcgcccggTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74181188 71 + 122973662 gacctcgtgatccacccgtctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagtcC
i nomLeu3.chr1a            C 0 C 0
e dasNov3.JH561790             51740  0 -    302817 C
e proCoq1.NW_012147953v1      967731 134 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I
e saiBol1.JH378348            229581  0 -    375362 C
e otoGar3.GL873742           1537309 110 -   2232465 I
e aotNan1.NW_018494050v1      165476  2 -    285216 I
e cebCap1.NW_016108108v1      228586  2 -    373274 I
e calJac3.chr4             171402502  1 - 171630274 I
e colAng1.NW_012115566v1     1881879  0 -   3067355 C
e manLeu1.NW_012104165v1     1997419  0 +   2316924 C
e chlSab2.chr17             28314870  0 -  71996105 C
e cerAty1.NW_012001495v1     1872377  0 -   2157725 C
e macNem1.NW_012011356v1     2000818  0 -   2996164 C
e macFas5.chr4              29020652  0 - 170955103 C
e rheMac8.chr4              29359767  0 + 172585720 C

a score=845.000000
s hg38.chr6_GL000254v2_alt    161880 1 +   4827813 C
s panTro5.chr6              29149361 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383569 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184013 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74181259 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873742           1537419 1 -   2232465 T
i otoGar3.GL873742         I 110 C 0
e dasNov3.JH561790             51740 0 -    302817 C
e proCoq1.NW_012147953v1      967731 134 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I
e saiBol1.JH378348            229581 0 -    375362 C
e aotNan1.NW_018494050v1      165476 2 -    285216 I
e cebCap1.NW_016108108v1      228586 2 -    373274 I
e calJac3.chr4             171402502 1 - 171630274 I
e colAng1.NW_012115566v1     1881879 0 -   3067355 C
e manLeu1.NW_012104165v1     1997419 0 +   2316924 C
e chlSab2.chr17             28314870 0 -  71996105 C
e cerAty1.NW_012001495v1     1872377 0 -   2157725 C
e macNem1.NW_012011356v1     2000818 0 -   2996164 C
e macFas5.chr4              29020652 0 - 170955103 C
e rheMac8.chr4              29359767 0 + 172585720 C

a score=7098.000000
s hg38.chr6_GL000254v2_alt    161881 1 +   4827813 T
s panTro5.chr6              29149362 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383570 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184014 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74181260 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29359767 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29020652 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2000818 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872377 1 -   2157725 T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28314870 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997419 1 +   2316924 T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1881879 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1537420 1 -   2232465 T
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51740 0 -    302817 C
e proCoq1.NW_012147953v1      967731 134 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I
e saiBol1.JH378348            229581 0 -    375362 C
e aotNan1.NW_018494050v1      165476 2 -    285216 I
e cebCap1.NW_016108108v1      228586 2 -    373274 I
e calJac3.chr4             171402502 1 - 171630274 I

a score=8281.000000
s hg38.chr6_GL000254v2_alt    161882 1 +   4827813 A
s panTro5.chr6              29149363 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383571 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184015 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74181261 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29359768 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29020653 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2000819 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872378 1 -   2157725 A
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28314871 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997420 1 +   2316924 A
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1881880 1 -   3067355 A
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            229581 1 -    375362 A
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1537421 1 -   2232465 A
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51740 0 -    302817 C
e proCoq1.NW_012147953v1      967731 134 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I
e aotNan1.NW_018494050v1      165476 2 -    285216 I
e cebCap1.NW_016108108v1      228586 2 -    373274 I
e calJac3.chr4             171402502 1 - 171630274 I

a score=112554.000000
s hg38.chr6_GL000254v2_alt    161883 12 +   4827813 AAAGCCGATTCT
s panTro5.chr6              29149364 12 + 175400573 AAAGCCGATTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383572 12 + 173848474 AAAGCCGATTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184016 12 +   6154872 AAAGCCGATTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74181262 12 + 122973662 AAAGCCGATTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29359769 12 + 172585720 AAAGCCGATTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29020654 12 - 170955103 AAAGCCGATTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2000820 12 -   2996164 AAAGCCGATTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872379 12 -   2157725 AAAGCCGATTCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28314872 12 -  71996105 AAAGCCGATTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997421 12 +   2316924 AAAGCCGATTCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1881881 12 -   3067355 AAAGCCGATTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171402503 12 - 171630274 AAAGCCGATTCC
i calJac3.chr4             I 1 C 0
s saiBol1.JH378348            229582 12 -    375362 AAAGCCGATTCC
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1537422 12 -   2232465 AAAGTCGATTTT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51740  0 -    302817 C
e proCoq1.NW_012147953v1      967731 134 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I
e aotNan1.NW_018494050v1      165476  2 -    285216 I
e cebCap1.NW_016108108v1      228586  2 -    373274 I

a score=193500.000000
s hg38.chr6_GL000254v2_alt    161895 19 +   4827813 TAAAAATATACGTTGGTAA
s panTro5.chr6              29149376 19 + 175400573 TAAAAATATACGTTGGTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383584 19 + 173848474 TAAAAATATACGTTGGTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184028 19 +   6154872 TAAAAATATACGTTGGTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74181274 19 + 122973662 TAAAAATATACGTTGGTAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29359781 19 + 172585720 TAAAAATATACGTTGGTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29020666 19 - 170955103 TAAAAATATACGTTGGTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2000832 19 -   2996164 TAAAAATATACGTTGGTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872391 19 -   2157725 TAAAAATATACGTTGGTAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28314884 19 -  71996105 TAAAAATAAAGGTTGGTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997433 19 +   2316924 TAAAAATATACATTGGTAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1881893 19 -   3067355 TAAAAATATACGTTGGTAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171402515 19 - 171630274 TAAAAATACACGTTAGTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            229594 19 -    375362 TAAAAATATACGTTGGTGG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      228588 19 -    373274 TAAAAATATACGTTGGTGG
i cebCap1.NW_016108108v1   I 2 C 0
s aotNan1.NW_018494050v1      165478 19 -    285216 TAAAAATATACCTTGGTGG
i aotNan1.NW_018494050v1   I 2 C 0
s otoGar3.GL873742           1537434 18 -   2232465 -TTAAGTGTAGGTTGGTAG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51740  0 -    302817 C
e proCoq1.NW_012147953v1      967731 134 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I

a score=388810.000000
s hg38.chr6_GL000254v2_alt    161914  61 +   4827813 TTGTTTATGCCTACTGCTGAGATCAGG----------ATA------TCTCTAAAGTAAGGAGA------GGAAAAAG------------------------------------------AAAAGT
s panTro5.chr6              29149395  61 + 175400573 TTGTTTATGCCTACTGCTGAGATCAGG----------ATA------TCTCTAAAGTAAGGAGA------GGAAAAAG------------------------------------------AAAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383603  61 + 173848474 TTGTTTATGCCTACTGCTGAGATCAGG----------ATA------TCTCTAAAGTAAGGAGA------GGAAAAAG------------------------------------------AAAAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184047  60 +   6154872 TTGTTTATGCCTACTCCTGAGATCAGG----------ATA------TCTCAAAAGTAAGGAGA------GGAAAAA-------------------------------------------AAAAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74181293  67 + 122973662 TTGTTTATGCCTACTGCTGAAATCAGG----------GTA------TCTCAAAAGTAAGGAGATGGGGGGAAGAAAA------------------------------------------AAAAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29359800 102 + 172585720 TTGTTTATGCCTACTGCTGAGATCAAG----------ATA------CCTCAAAAGTAATGAGA------GGAAAAAAA-AATCATGTGTCAGAAGTGGGATTCGAAATGAGAGAAAAAGAAAATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29020685 102 - 170955103 TTGTTTATGCCTACTGCTGAGATCAAG----------ATA------CCTCAAAAGTAATGAGA------GGAAAAAAA-AATCATGTGTCAGAAGTGGGATTCGAAATGAGAGAAAAAGAAAATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2000851  60 -   2996164 TTGTTTATGCCTACTGCTGAGATCAAG----------ATA------CCTCAAAAGTAATGAGA------GGGAAAA-------------------------------------------AAAATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872410  63 -   2157725 TTGTTTATGCCTACTGCTGAGATCAGG----------ATA------CCTCAAAAGTAATGAGA------GGAAAAAAA-A---------------------------------------AAACTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28314903  59 -  71996105 TTGTTTATACCTACTGCTGAGATCAAG----------ATA------TCTCAATAGTAATGAGA------GG---GGAA-----------------------------------------AAAACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997452  62 +   2316924 TTGTTTATGCCTACTGCTGAGATCAAG----------ATA------CCTCAAAAGTAATGAGA------GGAAAAAAA-----------------------------------------AAAATC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1881912  62 -   3067355 TTGTTTATGCCTACTGCTGAGATCAAG----------ATA------TCTCAAAAGTAATTAGA------GGAAAAATA-----------------------------------------AAAACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171402534  60 - 171630274 TTGTTGATGCCTACTGCTGAGATCAAG----------ATA------TCTTAAAGA----GGGA------GGAAAAGAACA---------------------------------------AAACGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            229613  59 -    375362 TTGTTGATGCCTACTGCTGAGATCAAG----------ATA------CGTTAAAGG----GGGA------GGAAAAGAA-A---------------------------------------AAGCGA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      228607  59 -    373274 TTGTTGATGCCTACTGCTGAGATCAAG----------ATA------TCTTAAAGC----GGGA------CGAAAAGAA-A---------------------------------------AAGCAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      165497  59 -    285216 TTGTTGATGCCTACTGCTGAGATCAAG----------ATA------TCTTAAAGG----GGGA------GGAAGAGGA-A---------------------------------------AAAAGG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1537452  71 -   2232465 TTGCTTACGTATACTTCTGAGACGAAGTTCAATGCATTTA------TTCCGAAATGAAAAGGA------AAAAAAAAA-----------------------------------------AAGCG-
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             51740  63 -    302817 ----TTATTTATAGCGTTAAGACCAGT----------ATAGATTTGTTCCAGAATTGGAGAGA------GGAAAAAAA-----------------------------------------AACAC-
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      967731 134 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I

a score=1651467.000000
s hg38.chr6_GL000254v2_alt    161975 111 +   4827813 ATgtgtcagaagtgggattcgaacccacgcctcca-ttggagaccagaatccccaccgcggaggaagcttagcttgagtctggcgccttagaccactcggccatcctgacAC
s panTro5.chr6              29149456 111 + 175400573 ATgtgtcagaagtgggattcgaacccacgcctcca-ttggagaccagaatccccaccgcggaggaagcttagcttgagtctggcgccttagaccactcggccatcctgacAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383664 111 + 173848474 ATgtgtcagaagtgggattcgaacccacgcctcca-ttggagaccagaatccccaccgcggaggaagcttagcttgagtctggcgccttagaccactcggccatcctgacAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184107 111 +   6154872 ATgtgtcagaagtgggattcgaacccacgcctcca-ttggagaccagaatccccaccgcggaggaagcttagcttgagtctggcgccttagaccactcggccatcctgacAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74181360 110 + 122973662 ATgtgtcagaagtgggattcgaacccacgcctcca-ttggagaccagaaaccccagcgcgg-ggaagtgtagcttgagtctggcgccttagaccactcggccatcctgacAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29359902 110 + 172585720 ATgtgtcagaagtgggattcgaacccacgcctcca-ttggagaccagaatccccagcgcgg-ggaagcgtagcttgagtctggcgccttagaccactcggccatcctgacAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29020787 110 - 170955103 ATgtgtcagaagtgggattcgaacccacgcctcca-ttggagaccagaatccccagcgcgg-ggaagcgtagcttgagtctggcgccttagaccactcggccatcctgacAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2000911 110 -   2996164 ATgtgtcagaagtgggattcgaacccacgcctcca-ttggagaccagaatccccagcgcgg-ggaagcgtagcttgagtctggcgccttagaccactcggccatcctgacAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872473 110 -   2157725 ATgtgtcagaagtgggattcgaacccacgcctcca-ttggagaccagaatccccagcgcgg-ggaagcgtagcttgagtctggcgccttagaccactcggccatcctgacAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28314962 110 -  71996105 ATgtgtcagaagtgggattcgaacccacgcctcca-ttggagaccagaatccccagcgcgg-ggaagcgtagcttgagtctggcgccttagaccactcggccatcctgacAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997514 110 +   2316924 ATgtgtcagaagtgggattcgaacccacgcctcca-ttggagaccagaatccccagcgcgg-ggaagcgtagcttgagtctggcgccttagaccactcggccatcctgacAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1881974 110 -   3067355 ATgtgtcagaagtgggattcgaacccacgcctcca-ttggagaccagaacccccagcgcgg-ggaagcgaagcttgagtctggcgccttagaccactcggccatcctgacAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171402594 110 - 171630274 ATgtgtcagaagtgggattcgaacccacgcctcca-ttggagaccagaatccccagcaccg-ggaagctcagcttgagtctggcgccttagaccactcggccatcctgacAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            229672 110 -    375362 ATgtgtcagaagtgggattcgaacccacgcctcca-ttggagaccagaatccccagcacaa-ggaagctaagcttgagtctggcgccttagaccactcggccatcctgacAC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      228666 110 -    373274 ATgtgtcagaagtgggattcgaacccacgcctcca-tcggagaccagaatccccagcacag-ggaagtcaagcttgagtctggcgccttagaccactcggccatcctgacAC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      165556 110 -    285216 ATgtgtcagaagtgggattcgaacccacgcctcca-tcggagaccagaatccccagcaccg-ggaagctaagcttgagtctggcgccttagaccactcggccatcctgacAC
i aotNan1.NW_018494050v1   C 0 I 64
s proCoq1.NW_012147953v1      967865 111 -   3516910 ATgtgtcagaagtgggattcgaacccacgcctccatttggagaccagaatccccagcgcgg-ggaagcagagcttgagtctggcgccttagaccactcggccatcctgacAC
i proCoq1.NW_012147953v1   I 134 C 0
s otoGar3.GL873742           1537523 111 -   2232465 ATgtgtcagaagtgggattcgaacccacgcctccatttggagaccagaatccccagcgtag-ggaagcagagcttgagtctggcgccttagaccactcggccatcctgacAC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             51803 110 -    302817 -Tgtgtcagaagtgggattcgaacccacgcctccattcggagaccagaatcctcagaacga-ggaagcaacgcttgagtctggcgccttagaccactcggccatcctgacAC
i dasNov3.JH561790         C 0 I 2668
e canFam3.chr35             25897339 2468 +  26524999 I

a score=430982.000000
s hg38.chr6_GL000254v2_alt    162086 68 +   4827813 AC-TGCATAACAGCCCTGATTTTTGCACTAAAATAGAGATCAACAAGCAATGA-TTCTGTGTCGTGCACG
s panTro5.chr6              29149567 68 + 175400573 GC-TGCATAACAACCCTGATTTTTGCACTAAAATAGAGATCAACGAGCAATGA-TTCTGTGTCGTGCACG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383775 68 + 173848474 GC-TGCATAACAGCTCTGATTTTTGCACTAAAATAGAGATCAACGAGCAATGA-TTCTGTGTCGTGCACG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184218 68 +   6154872 AC-TGCCTAGCAAGCCTGATTTTTGCACTAAAATAGAGATCAACAAGCAATGA-TTCTGTGTCGTGCACG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74181470 68 + 122973662 AC-TGCGTAACGCCTCTGATTTTTGCCCTGAAATAGAGATCAACAAGCAATGA-TTCTGTGACGTGCACG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29360012 69 + 172585720 CC-TGCGTGAGAGAGACGATTTTTCCACTAAAATAGAGATCAACAAGCAATGATTTTTGTGACGTGCATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29020897 69 - 170955103 CC-TGTGTGAGAGAGACGATTTTTCCACTAAAATAGAGATCAACAAGCAATGATTTTTGTGACGTGCATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2001021 69 -   2996164 TC-TGCGTGAGAGAGACGATTTTTCCACTAAAATAGAGATCAACAAGCAATGATTTTTGTGACGTGCATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872583 68 -   2157725 CC-TACATGATAGAGACGATTTTTCCACTAAAATAGACATCAACAAGCAATGA-TTTTGTGACGTGCATG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28315072 69 -  71996105 CC-TGTGGGAGACAGGCGATTTTTCCACTAAAATAGAGATCAACAAGGAATGATTTTTGTGACGTGCATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997624 68 +   2316924 CC-TGCGTGACAGAGACGATTTTTCCACTAAAATAGAGATCAACAAGCAATAA-TTTTGTGACGTGCATG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1882084 69 -   3067355 CC-TGCATAACGGACGCGATTTTTTCGCTAAAATAGAGATCAGCAAGCAATGATTTTTGTGACGTGCACG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171402704 64 - 171630274 GC-TGTAAAACAAGCGCGATTTTTTTGATAATATAGAGATCAACGAGCACTGT-GTCTGTGACGCG----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            229782 64 -    375362 TC-GGAAAAGCCGTTGCGATTTTTTCACTAATATAGAGATCAACGTGCACTGC-GTCTGTGACGCG----
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      228776 64 -    373274 AC-TGTAAAGCTCTGGCGATTTTTTCGCTAATATAGAGACCAACGAGCACTGC-GTCTGTGACGCG----
i cebCap1.NW_016108108v1   C 0 C 0
s proCoq1.NW_012147953v1      967976 63 -   3516910 CCGGGAGGAATGTGCACATTTTT--CACTAAAATAGAGATCAGGGAGCAACGT-TTCTGTGACGTA----
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1537634 62 -   2232465 CC-TGCGGAAGGACAGCGATTTT--CACTAAAATGGAGATCGACGCGCAACGA-TTCTCTGACGTG----
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e canFam3.chr35             25897339 2468 +  26524999 I
e aotNan1.NW_018494050v1      165666 64 -    285216 I

a score=472065.000000
s hg38.chr6_GL000254v2_alt    162154 43 +   4827813 CACGCAGAAACGCGATGACGTCAGGGTTGCTTGGTAACAG----AAG-
s panTro5.chr6              29149635 43 + 175400573 CACGCAGAAACGCGATGGCGTCAGGGTTGCTTGGTAACAG----AAG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383843 43 + 173848474 CACGCAGAAACGCGATGGCGTCAGTGTTGCTTGGTAACAG----AAG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184286 43 +   6154872 CACGCAGAAACGCGATGACGTCAGGGTTGCTTGGTAACAG----AAG-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74181538 43 + 122973662 CACGCAGAAACGCGATGACGTCAGAGTTGCTTGGTAACAT----AAG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29360081 43 + 172585720 CACGCAGAAACGCGATGACGTCAGGGTTGCTTGGTAACAG----AAG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29020966 43 - 170955103 CACGCAGAAACGCGATGACGTCAGGGTTGCTTGGTAACAG----AAG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2001090 43 -   2996164 CACGCAGAAACGCGATGACGTCAGGGTTGCTTGGTAACAG----AAG-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872651 43 -   2157725 CACGCAGAAACGCGATGACGTCAGGGTTGCTCGGTAACAG----AAG-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28315141 42 -  71996105 CACGCAG-AACGCGATGACGTCAGGGTTGCTTGGTAACAG----AAG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997692 43 +   2316924 CACGCAGAAACGCGATGACGTCAGGGTTGCTTGGTAACAG----AAG-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1882153 43 -   3067355 CACGCAGAAACGCGATGACGTCAGGGTTGCTTGGTAACAG----AAG-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171402768 42 - 171630274 CACGCAGAAACGCGATGACGTCAT-GTTGCTTGGTAACGG----AAG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            229846 46 -    375362 CACGGAGAAACGCGATGACGTCAG-GTTGCTTGGTAACGGATAAAAA-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      228840 42 -    373274 CATTCAGAAACGCGATGACGTCAG-GTTGCTTGGTAACGG----AAG-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      165730 42 -    285216 CACGCAGAAACGCGATGACGTCAG-GTTGCTTGGTAACGG----AAG-
i aotNan1.NW_018494050v1   I 64 I 49
s proCoq1.NW_012147953v1      968039 44 -   3516910 TACGCAAAGAAGTGATGATGTCGGAGTTGCCTGGTAACGG----TAAG
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1537696 44 -   2232465 TATTCAAGGAAGTGTTGACGTCGGGGTTGCTTAGCAACGG----CAAG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e canFam3.chr35             25897339 2468 +  26524999 I

a score=386943.000000
s hg38.chr6_GL000254v2_alt    162197 48 +   4827813 GGCAGAAAGCCACTTGTGGATTGAAAAAGCAAAAGGGTTCGCAGGACT
s panTro5.chr6              29149678 48 + 175400573 GGCAGAAAGCCACTTGTGGATTGAAAAAGCAAAAGGGTTCGCAGGACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383886 48 + 173848474 GGCAGAAAGCCACTTGTGGATTGAAAAAGCAAAAGGGTTCGCAGGACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184329 47 +   6154872 GGCAG-AAGCCACTTGTGGATTGAAAAAGGAAAAGAGTTCGCAGGACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74181581 48 + 122973662 GGAAGAAAGCCACTTGTGGATTGAAAAAGGAAAAGACTTCGCAGGACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29360124 48 + 172585720 GGAAGGAAGCCACTTGTGGATTAAAAAAGGAAAAGACTTCGCAGGACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29021009 48 - 170955103 GGAAGGAAGCCACTTGTGGATTAAAAAAGGAAAAGACTTCGCAGGACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2001133 48 -   2996164 GGAAGGAAGCCACTTGTGGATTAAAAAAGGAAAAGACTTCGCAGGACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872694 48 -   2157725 GGAAGGAAGCCACTTGTGGATTAAAAAAGGAAAAGACTTCGCAGGACT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28315183 48 -  71996105 GGAAGGAAGCCACTTGTGGATTAAAAAAGGAAAAGACTTCTCAGGACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997735 48 +   2316924 GGAAGGAAGCCACTTGTGGATTAAAAAAGGAAAAGACTTCGCAGGACT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1882196 48 -   3067355 GGAAGAAAGCCACTTGTGGATTAAAAAAGGAAAAGACTTCGCAGAACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171402810 45 - 171630274 ---AAAAAGCCACCTGTGGATTGAAACCGGAAGAGGCTATGGAGCTGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            229892 45 -    375362 ---ACAAAGCCACCTGTGGGTTGAAAGCGGAAGAGACTATGCAGCAGC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      228882 45 -    373274 ---AAAAAGCCACCGGTGGATTGAAACCGGAAGAGACTATGCAGCAGC
i cebCap1.NW_016108108v1   C 0 C 0
s proCoq1.NW_012147953v1      968083 48 -   3516910 AAAAGAAAGCCACCTGTGGATTGAAAAAGGAAAAGATTTTGCAGGAGC
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1537740 39 -   2232465 AACCCAAAGCTCCCTAAGGATTGAGA---------ATTTAGCGGGAGC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e canFam3.chr35             25897339 2468 +  26524999 I
e aotNan1.NW_018494050v1      165772 49 -    285216 I

a score=456773.000000
s hg38.chr6_GL000254v2_alt    162245 38 +   4827813 --AGAAAATGTTTCTGCATAAAACTGGAT-CAAGTCTCTTA
s panTro5.chr6              29149726 38 + 175400573 --AGAAAATGTTTCTGCATAAAACTGGAT-CAAGTCTCTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383934 38 + 173848474 --AGAAAATGTTTCTGCATAAAACTGGAT-CAAGTCTCTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184376 38 +   6154872 --AGAAAATGTTTCTGCATAAAACTGGAT-CAAGTCTCTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74181629 38 + 122973662 --AGAAAATGTTTATGCATAAAACCGGAT-CAAGTCTCTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29360172 38 + 172585720 --AGAAAATGTTTATGCATAAAACTGGAT-CAAGTCTCTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29021057 38 - 170955103 --AGAAAATGTTTATGCATAAAACTGGAT-CAAGTCTCTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2001181 38 -   2996164 --AGAAAATGTTTATGCATAAAACTGGAT-CAAGTCTCTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872742 38 -   2157725 --AGAAAATGTTTATGCATAAAACTGGAT-CAAGTCTCTTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28315231 38 -  71996105 --AGAAAATGTTTATGCATAAAACTGGAT-CAAGTCTCTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997783 38 +   2316924 --AGAAAATGTTTATGCATAAAACTGGAT-CAAGTCTCTTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1882244 38 -   3067355 --AGAAAATGTTTATGCATAAAACTGGAT-CAAGTCTCTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171402855 38 - 171630274 --AGAAAATGTTTATGCGTAAAACTGGGT-CAAGTCTCTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            229937 38 -    375362 --AGAAAACGTTTATGTGTAAAACTGGGT-CAAGTCTCTTA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      228927 38 -    373274 --GGAAAATGTTTATGCGTAAAACTGGGT-CAAGTCTCCTA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      165821 38 -    285216 --AGAAAATGTTTATGAGTAAAACTGGGT-CAAGTCTCTTA
i aotNan1.NW_018494050v1   I 49 I 58
s proCoq1.NW_012147953v1      968131 41 -   3516910 AGAAAAAATGTTTATGCGTAAAACTGGATACAATTCTCTTA
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1537779 41 -   2232465 AGAAAAAATTTTCATACAGGAAACAGGATACTAGTCTCTTA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e canFam3.chr35             25897339 2468 +  26524999 I

a score=102529.000000
s hg38.chr6_GL000254v2_alt    162283 9 +   4827813 CGGGCCTTA
s panTro5.chr6              29149764 9 + 175400573 CGGGCCTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383972 9 + 173848474 CGGGCTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184414 9 +   6154872 CGGGCCTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74181667 9 + 122973662 CGGGCCTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29360210 9 + 172585720 CGGGCCTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29021095 9 - 170955103 CGGGCCTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2001219 9 -   2996164 CGGGCCTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872780 9 -   2157725 CGGGCCTTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28315269 9 -  71996105 CGGGCCTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997821 9 +   2316924 CGGGCCTTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1882282 9 -   3067355 CGTGCCTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171402893 9 - 171630274 CGGGCCTTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            229975 9 -    375362 GGGGCCTTA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      228965 9 -    373274 CTGGCCTTA
i cebCap1.NW_016108108v1   C 0 C 0
s proCoq1.NW_012147953v1      968172 9 -   3516910 TGGGCCTTA
i proCoq1.NW_012147953v1   C 0 I 618
s otoGar3.GL873742           1537820 9 -   2232465 TGGGCCTTA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e canFam3.chr35             25897339 2468 +  26524999 I
e aotNan1.NW_018494050v1      165859 58 -    285216 I

a score=290953.000000
s hg38.chr6_GL000254v2_alt    162292 32 +   4827813 TAACTGTTATCGCCATCTCGAAAAACGTGTGC
s panTro5.chr6              29149773 32 + 175400573 TAACTGTTATCGCCATCTCGAAAAACGTCTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29383981 32 + 173848474 TAACTGTTATCGCCATCTCGAAAAACGTCTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184423 32 +   6154872 TAACTGTTATCGCCATCTCGAAAAACGTGTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74181676 32 + 122973662 CAACTGTTACCGCTATCTCGAAAAACGCGTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29360219 32 + 172585720 CAACTGTCATCCCCATCTCGAAAAACGCGTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29021104 32 - 170955103 CAACTGTCATCCCCATCTCGAAAAACGCGTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2001228 32 -   2996164 CAACTGTCATCCCCATCTCGAAAAACGCGTGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872789 32 -   2157725 CAACTGTCATCCCCATCTCGAAAAACGCGTGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28315278 32 -  71996105 CAACTGTCATCCCCATCTCGAAAACCGCGTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997830 32 +   2316924 CAACTGTCATCCCCATCTCGAAAAACGCGTGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1882291 32 -   3067355 CAACTGTCATCCCCATCTCGAAAAACGCGTGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171402902 32 - 171630274 CGACTGTCATCCCCATCTCGAAAAACGCGTGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            229984 32 -    375362 CAGCTGTCATCCCTATCTCGAAAAACGCGTGC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      228974 32 -    373274 CAACTGTCATCCCCATCTCGAAAGACGCGTGC
i cebCap1.NW_016108108v1   C 0 I 60
s otoGar3.GL873742           1537829 32 -   2232465 CAGCTGTCACCCCCATTTGAAATTAAGTGTGC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      968181 618 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I
e aotNan1.NW_018494050v1      165859 58 -    285216 I

a score=341281.000000
s hg38.chr6_GL000254v2_alt    162324 72 +   4827813 GGGtttt-----------------ttttttttttttttGCTCCCAGCCTGCCCAGATTTCAGGAAGGA---------AAGAAGATC-TTTTGCTTCTTC
s panTro5.chr6              29149805 89 + 175400573 GGtttttgttttttttttttttttttttttttttttttGCTCCCAGCCTGCCCACATTTCAGGAAGGA---------AAGAAGATC-TTTTGCTTCTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29384013 72 + 173848474 GGTTTTT-----------------GTGTTTTTTTTTTTGCTCCCAGCCTGCCCACATTTCAGGAAGGA---------AAGAAGATC-TTTTGCTTCTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184455 70 +   6154872 GGGtttt-------------ttttttttttttttttttGCTCCCAGCCTGCCCAGATTTCAGGAAGGA------------AAGATC-TTTTG---CTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74181708 82 + 122973662 AGttttt----tttttttgttgttgttgttgtttttttGCTCCCAGCCTGCCCAGGTTTCAGGAAGGA---------AAGAACATC-TTTTG---CTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29360251 73 + 172585720 AAttttt-------------tttttttttttttttttttCCCCCAGCCTGCCCAGGTTTCAGGAAGGA---------AAGAACATC-TTTTG---CTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29021136 73 - 170955103 AAttttt-------------ttttttttttttttttttGCCCCCAGCCTGCCCAGGTTTCAGGAAGGA---------AAGAACATC-TTTTG---CTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2001260 67 -   2996164 AA-------------------tttttttttttttttttGCCCCCAGCCTGCCCAGGTTTCAGGAAGGA---------AAGAACATC-TTTTG---CTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872821 66 -   2157725 AA--------------------TTTTTTTTTTTTTTTTGTCCCCAGCCTGCCCAGGTTTCAGGAAGGA---------AAGAACATC-TTTTG---CTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28315310 67 -  71996105 AA-------------------tttttttttttttttttGCCCCCAGCCTGCCCAGGTTTCAGGAAGGA---------AAGAACATC-TTTTG---CTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997862 71 +   2316924 AA--ttt-------------ttttttttttttttttttGCCCCCAGCCTGCCCAGGTTTCAGGAAGGA---------AAGAACATC-TTTTG---CTTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1882323 66 -   3067355 AA--------------------TTTTTTTTTTTTTTTTGCCTGCAGCCTGCCCAGGTTTCAGGAAGGA---------AAGAACATC-TTTTG---CTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171402934 60 - 171630274 ------------------------AAATGTGTTTTATTGCGCGCAGCCTG-CCAGGTTTCGGGAAGGA---------AAGGCCCTC-TTGTG---TCT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            230016 58 -    375362 ------------------------AAATGTTTTT--TTGCACCCAGCCTG-CCAGGTTTCGGAAAGGA---------AAGGCCCTC-TTGTG---CCT-
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1537861 71 -   2232465 -------------------------AAACATTTCTTGTGTGCTCAGCCTACACAGATTTCAGGAAGGAAGGGAAAGGAAGAACGTCTTTTTG---CCTT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      968181 618 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I
e aotNan1.NW_018494050v1      165859 58 -    285216 I
e cebCap1.NW_016108108v1      229006 60 -    373274 I

a score=480040.000000
s hg38.chr6_GL000254v2_alt    162396 47 +   4827813 GGTCGCTGGGTCGGCTCTCCAGTGTC-TGATGTTTACTGAAATCTTGA
s panTro5.chr6              29149894 47 + 175400573 GGTCGCTGGGTCGGCTCTCCAGTGTC-TGATGTTTACTGAAATCTTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29384085 47 + 173848474 GGTCGCTGGGTCGGCTCTCCAGTGTC-TGATGTTTACTGAAATCTTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184525 47 +   6154872 GGTCGCTGGGTCGGCTCTCCAGTGTC-TGATGTTTACTGAAATCTTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74181790 47 + 122973662 GGTCGCTGGGTCGGCTCTCCAGCGTC-TGATGTTTACTGAAATCTTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29360324 47 + 172585720 GGTCGCTGGATCGGCTCTCCAGCGTC-TGATGTTTACTGAAATCTTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29021209 47 - 170955103 GGTCGCTGGATCGGCTCTCCAGCGTC-TGATGTTTACTGAAATCTTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2001327 47 -   2996164 GGTCGCTGGATCGGCTCTCCAGCGTC-TGATGTTTACTGAAATCTTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872887 47 -   2157725 GGTCGCTGGATCGGCTCTCCAGCGTC-TGATGTTTACTGAAATCTTGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28315377 47 -  71996105 AGTGGCTGGATCGGCTCTCCAGCGTC-TGATGTTTACTGAAATCTTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997933 48 +   2316924 GGTCGCTGGATCGGCTCTCCAGCGTCTTGATGTTTACTGAAATCTTGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1882389 47 -   3067355 GGTCGCTGGATCGGCTCTCCAGCGTC-TGATGTTTACTGAAATCTTGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171402994 47 - 171630274 GGTCGCTGTGTCGGCTCTCCAGCGCC-TGCTGTTGTCTCAAATCCTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            230074 47 -    375362 GGTCGCTGGGTAGGCTCTCGAGCGTC-TGCTGTTGACTCAAATCTTGA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      229066 47 -    373274 GGTCGCTAGGTCGGCTCTCCAGCGCC-TGCTGTTGACTCAAATCTTGA
i cebCap1.NW_016108108v1   I 60 I 185
s aotNan1.NW_018494050v1      165917 47 -    285216 GGTCGCTGGGTCGGCTCTCCAGCGCC-TGCTGTTGACTCAAATCTTAA
i aotNan1.NW_018494050v1   I 58 C 0
s otoGar3.GL873742           1537932 38 -   2232465 GTTCTCTGGGTCGGCTTTCCAGACTT-TACTG---------GTCTTGA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      968181 618 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I

a score=519594.000000
s hg38.chr6_GL000254v2_alt    162443 63 +   4827813 TCGTGGTTAGCC-TCCCCC-------AGGACTTCATTGTTTGGAAGATGGTGAGGAACAAAA---CAAAACCCT
s panTro5.chr6              29149941 63 + 175400573 TCGTGGTTAGCC-TCCCCC-------AGGACTTCATTGTTTGGAAGATGGTGAGGAACAAAA---CAAAACCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29384132 63 + 173848474 TCGTGGTTAGCC-TCCCCC-------AGGACTTCATTGTTTGGAAGATGGTGAGGAACAAAA---CAAAACCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184572 63 +   6154872 TTGTGGTTAGCC-TCCCCC-------AGGACTTCATTGTTTGGAAGATGGTGAGGAACAAAA---CAAAACCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74181837 64 + 122973662 TCGTGGTTAGCCTTCCCCT-------AGGACTTCATTGTTTGGAAGATGGTGAGGAACAAAA---CAAAACCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29360371 64 + 172585720 TTATGGTTAGCC-TCCCCC------TAGGACTTCATTGTTTGGAAGACGGTGAGGAACAAAA---CAAAACCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29021256 64 - 170955103 TTATGGTTAGCC-TCCCCC------TAGGACTTCATTGTTTGGAAGACGGTGAGGAACAAAA---CAAAACCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2001374 64 -   2996164 TTATGGTTAGCC-TCCCCC------TAGGACTTCATTGTTTGGAAGACGGTGAGGAACAAAA---CAAAACCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872934 64 -   2157725 TTATGGTTAGCC-TCCCCC------TAGGACTTCATTGTTTGGAAGACGGTGAGGAACAAAA---CAAAACCCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28315424 64 -  71996105 TTATGGTTAGCC-TCCCCC------TAGGACTTCATTGTTTGGAAGACGGTGAGGAACAAAA---CAAAACCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1997981 64 +   2316924 TTATGGTTAGCC-TCCCCC------TAGGACTTCATTGTTTGGAAGACGGTGAGGAACAAAA---CAAAACCCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1882436 64 -   3067355 TTATGGTTACCC-TCCCCC------TAGGACTTCATTGTTTGGAAGACGGTGAGGAACAAAA---CAAAACCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171403041 63 - 171630274 CGGTACTCAGCG-ACCCCC-------AGGACTTAATTCTTGGGAAGACGGTGAGGAGCAAAA---CAAAACCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            230121 54 -    375362 CGGTATTCAGCG-TCCCCA-------AGGACTTAATTCTTGGGAAGACCGTGAG-----------CGAAA-CCT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      165964 63 -    285216 CGGTACTCAGCG-TCCCCC-------AGGACTTAATTCTTGGGAAGACCGTGAGGAACAAAA---CAAAACCCT
i aotNan1.NW_018494050v1   C 0 I 151
s otoGar3.GL873742           1537970 73 -   2232465 TCGTGGTTAGCC-TTCCCCTGGTACTAGGATTTTGTTCTTTTGAAGATGGTAAGAAACAGAACACCAAAATCCT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      968181 618 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I
e cebCap1.NW_016108108v1      229113 185 -    373274 I

a score=870285.000000
s hg38.chr6_GL000254v2_alt    162506 127 +   4827813 -----AACAAAAGACCCCGGTTCTATAGGAAGGTCCCCTTTTAG----CCCCTCTATTTTGGTTCCATTTGTCACTGCCTTGCCACTCGTCGAAGTTTGTCTTGGGCTCTAAAAGTGGTAGCCGGGAACGGCTGGG
s panTro5.chr6              29150004 127 + 175400573 -----AACAAAACACCCCGGTTCTATAGGAAGGTCCCCTTTTAG----CCCCTCTATTTTGGTTCCATTTGTCACTGCCTTGCCACTCGTCGAAGTTTGTCTTGGGCTCTAAAAGTGGTAGCCGGGAACGGCTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29384195 127 + 173848474 -----AACAAAAGACCCCGGTTCTATAGGAAGGTCCCCTTTTAG----CCCCTCTATTTTGGTTCCATTTGTCACTGCCTTGCCACTCGTCGAAGTTTGTCTTGGGCTCTAAAAGTGGTAGCCGGGAACGGCTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184635 127 +   6154872 -----AACAAAAGACCCCGGTTCTATAGGAAGGTCCCCTTTTAG----CCCCTCTATTTTGGTTCCATTTGTCACTGCCTTGCCACTCGTCGAAGTTTGTCTTGGGCTCTGAAAGTGGTAGCCGGGAACGGCTGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74181901 127 + 122973662 -----AACAGAAGACCCCGGTTGTATGGGAAGGTCCCCTTTTAG----CCCCTCTATTTTGGTTTCATTTGTCACTGCCTTGCCATTCGTCGAAGTTTGTCTTGGGCTCTGAAATTGGTAGCCGGGAACGGCTGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29360435 127 + 172585720 -----AACAAAAGACCCCGGTTCTATGGCAAAGTCCCCTTTTAG----CCCTTCTATTTTGGTTCCATTTGTCACTGCCTTGCCACTCGTCGAAGTTTGTCTTGGGCTCTGAAAGTCGCAGCCGGAAACGGCTGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29021320 127 - 170955103 -----AACAAAAGACCCCGGTTCTATGGCAAAGTCCCCTTTTAG----CCCTTCTATTTTGGTTCCATTTGTCACTGCCTTGCCACTCTTCGAAGTTTGTCTTGGGCTCTGAAAGTCGCAGCCGGGAACGGCTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2001438 127 -   2996164 -----AACAAAAGACCCCGGTTCTATGGCAAAGTCCCCTTTTAG----CCCTTCTATTTTGGTTCCATTTGTCACTGCCTTGCCACTCGTCGAAGTTTGTCTTGGGCTCTGAAAGTCGCAGCCGGGAACGGCTGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1872998 127 -   2157725 -----AACAAAAGACCCCGGTTCTATGGCAAAGTCCCCTTTTAG----CCCTTCTATTTTGGTTCCATTTGTCACTGCCTTGCCACTTGTCGAAGTTTGTCTTGGGCTCTGAAAGTCGCAGCCGGGAACGGCTGGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28315488 127 -  71996105 -----AACAAAAGACCCCGGTTCTATGGCAAAGTCCCCTTTTAG----CCCTTCTATTTTGGTTCCATTTGTCACTGCCTTGCCACTCGTCGAAGTTTGTCTTGGGCTCTGAAAGTCGCAGCCAGTAACGGCTGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1998045 127 +   2316924 -----AACAAAAGACCCCGGTTCTATGGCAAAGTCCCCTTTTAG----CCCTTCTATTTTGGTTCCATTTGTCACTGCCTTGCCACTCGTCGAAGTTTGTCTTGGGCTCTGAAAGTCGCAGCCGGGAACGGCTGGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1882500 127 -   3067355 -----AACAAAAGACCCCGGTTCTATGGCAAGGTCCCCTTTTAG----CCCTTCTATTTTGGTTCCATTTGTCACTGCCTTGCTACTCGTCGAAGTTTGTCTTCGGCTCTGAAAGTGGCAGCCGGGAACGGCTGGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171403104 113 - 171630274 -----GACCACAGACCCC-TCGCTAT-GCAGGGTCCACTTTTATCTAGCTCCTGCATTCTGG--CCCCGTGTCACCGCCTTGCCGTTGGTC----TGTGTCTTGGGCTCTGAAAATGGCGGCCGGG----------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            230175 111 -    375362 -----AAGGACAGACACC-GCTCTAT-GCAGGGTACCCTTTTAT----CTCCTGGATTCTGG--CCACGTGTCACCGCCTTGCCATTGGTCT--GTGTGTCTTGGGCTCTGAAAATGGCGGCCGGG----------
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1538043 129 -   2232465 AACAAAATAGAAAACCTT-GTTCTATAGGGTAA--CACATTTGC----CACCTCTATTTAGTTTCCTTCTGTCCTCACAAAGCCTTGCTTTAAAGTTTCTACTGGGTTCCGTAAGTGCCAGCCGGGAACTGCTAGG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      968181 618 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I
e aotNan1.NW_018494050v1      166027 151 -    285216 I
e cebCap1.NW_016108108v1      229113 185 -    373274 I

a score=93285.000000
s hg38.chr6_GL000254v2_alt    162633 25 +   4827813 -AA--GGTCTCCACAGGGACC--ACCACAT------
s panTro5.chr6              29150131 25 + 175400573 -AA--GGTCTCCACAGGGACC--ACCACAT------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29384322 25 + 173848474 -AA--GGTCTCCACAGGGACC--ACCACAT------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184762 25 +   6154872 -AA--GGTCTGCACAGGGACC--ACCACAT------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29360562 22 + 172585720 -AA--GGTCCGTACAGGG-----ACCACAT------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29021447 22 - 170955103 -AA--GGTCCGTACAGGG-----ACCACAT------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2001565 22 -   2996164 -AA--GGTCCGTACAGGG-----ACCACAT------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1873125 22 -   2157725 -AA--GGTCCGTACGGGG-----ACCACAT------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28315615 22 -  71996105 -AA--GGTCCGTACAGAG-----ACCACAT------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1998172 22 +   2316924 -AA--GGTCCGTACGGGG-----ACCACAT------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1882627 22 -   3067355 -AA--CGTCCGTACAGGG-----ACCACAT------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171403217 22 - 171630274 -AA--GGTCCGTGCAGGG-----GCCGTCG------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            230286 22 -    375362 -AA--GGTCCCCGCAGGG-----GCCGCCG------
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1538172 36 -   2232465 GAACTGCTCAGTGTAGGGCGCGGAACGCTTCTGCAG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      968181 618 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I
e aotNan1.NW_018494050v1      166027 151 -    285216 I
e cebCap1.NW_016108108v1      229113 185 -    373274 I
e nomLeu3.chr1a             74182028  0 + 122973662 C

a score=983368.000000
s hg38.chr6_GL000254v2_alt    162658 120 +   4827813 GGGCAAGGCTGGTGTCCGCGCCGAGGGATCGGCG-ATCCCAGGTCCGGGGAAACTCCGGGAGCGACGCGCTC-GCCCGCGGCCTTCCTTGTCGCTCTCGGATGTTCCCGATTAATGGGCTCC
s panTro5.chr6              29150156 120 + 175400573 GGGCAAGGCTGGTGTCCGCGCCGAGGGATCGGCC-ATCCCAGGTCCGGGGAAACTCCGGGAGCGACGCGCTC-GCCCGCGGCCTTCCTTGTCGCTCTCGGATGTTCCCGATTAATGGGCTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29384347 120 + 173848474 GGGCAAGGCTGGTGTCCGCGCCGAGGGATCGGCG-ATCCCAGGTCCGGGGAAACTCCGGCAGCGACGCGCTC-GCCCGCGGCCTTCCTTGTCGCTCTCGGATGTTCCCGATTAATGGGCTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184787 120 +   6154872 GGGCAAGGCTGGTGGCCGCGCCGAGGGATCGGCG-ATCCCAGGTCCAGGGAAACTCCGGGAGCGACGCGCTC-GCCCGCGGCCTTCCTTGTCGCTCTCGGATGTTCCCGATTAATGGGCTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29360584 119 + 172585720 GGGCGAGGCTGGTGTCCGCGCCGAGGGATCGGCC-ATCCCAGGT-CGGGGAAACTCCGGGAGCGACGCGCTC-GCCCGCGGCCTTCCTTATCGCTCTCAGATATTGCCGATTAATGGGCCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29021469 119 - 170955103 GGGCGAGGCTGGTGTCCGCGCCGAGGGATCGGCC-ATCCCAGGT-CGGGGAAACTCCTGGAGCGACGCGCTC-GCCCGCAGCCTTCCTTATCGCTCTCAGATATTGCCGATTAATGGGCCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2001587 119 -   2996164 GGGCGAGGCTGGTGTCCGCGCCGAGGGATCGGCC-ATCCCAGGT-CGGGGAAACTCCGGGAGCGACGCGCTC-GCCCGCGGCCTTCCTTATCGCTCTCAGATATTGCCGATTAATGGGCCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1873147 119 -   2157725 GGGCGAGGCTGGTGTCCGCGCCGAGGGATCGGCC-ATCCCAGGT-CGGGGAAACTCCGGGAGCGACGCGCTC-GCCCGCGGCCTTCCTTATCGCTCTCAGATATTGCCGATTAATGGGCTCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28315637 119 -  71996105 GGGCGAGGCTGGTGTCCGCGCCGAGGGATCGGCC-ATCCCAGGT-CGGGGAAACTCCGGGAGCGACGCGCTC-GCCCGCGGCCTTCCTTATCGCTCTCAGATATTGCCGATTAATGGGCTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1998194 119 +   2316924 GGGCGAGGCTGGTGTCCGCGCCGAGGGATCGGCC-ATCCCAGGT-CGGGGAAACTCCGGGAGCGACGCGCTC-GCCCGCAGCCTTCCTTATCGCTCTCAGATATTGCGGATTAATGGGCTCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1882649 120 -   3067355 GGGCAAGGCTGGTGTCCGCGCCGAGGGATCGGCC-ATCCCAGGTCCGGGGAAACTCCGGGAGCGACGCGCTC-GCCCGCGGCCTTCCTTATCGCTCTCAGATACTGCCGATTAATGGACTCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171403239 117 - 171630274 GTGCAAGGCCGGTGTCAGGGCCGA-GGATCTGC--GTCCCAGGT-TCGGGAAGCTCCGGGAGCCACGCGCTC-TCCCGCGGCCTTCCTGCTCGCTCTCGGAAGTTCCCGATTCACGGGCTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            230308 117 -    375362 GGGCAAGGCTGGTGTCTGCGCCGA-GGATCTGC--ATCCCAGGT-TCGGGAGGCTCCGGGAGCCACGCGGTC-TCCCGCGGCCTTCCTGCTCGCTTTCGGAAGTTCCTGATTCACGGGCTCC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      229298 117 -    373274 GGGCAAGGCCGGTGTCGGCGCCGA-GGATCTGC--GTCCCAGGT-TCGGGAAGCTCCGGGAGCAACACGCTC-TCCCGCGGCCTTCCTGCTCGCTCTCGGAAGTTCCCGATTCACGGGCTCC
i cebCap1.NW_016108108v1   I 185 I 558
s aotNan1.NW_018494050v1      166178 117 -    285216 GGGTAAGGCCGGTGTCCGCGCCGA-GGATCTGC--ATCCCAGGT-TCGGGAAGCTCCGGGAGCCACGCGCTC-TCCCGCGGCCCTCCTGCTCGCTCTCGGAAGTTCCCGATTCACGGGCTCC
i aotNan1.NW_018494050v1   I 151 C 0
s otoGar3.GL873742           1538208 115 -   2232465 CCGCAAGGCGGTTTTGCGC----AAGAACTGACCTGTCCCAGGGTCAGAGAAACTCAG---GTGAGACGCTCGGCCTCCGACCTTCCTGGTCACTCTCAGGTGATCCCGATTGGAAATATCC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      968181 618 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I
e nomLeu3.chr1a             74182028   0 + 122973662 C

a score=3742.000000
s hg38.chr6_GL000254v2_alt    162778 2 +   4827813 AA-
s panTro5.chr6              29150276 2 + 175400573 AA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29384467 2 + 173848474 AA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184907 2 +   6154872 AA-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29360703 2 + 172585720 GA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29021588 2 - 170955103 GA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2001706 2 -   2996164 GA-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1873266 2 -   2157725 GA-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28315756 2 -  71996105 GA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1998313 2 +   2316924 GA-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1882769 2 -   3067355 GA-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171403356 2 - 171630274 AA-
i calJac3.chr4             C 0 I 894
s saiBol1.JH378348            230425 2 -    375362 TA-
i saiBol1.JH378348         C 0 I 1
s aotNan1.NW_018494050v1      166295 2 -    285216 AA-
i aotNan1.NW_018494050v1   C 0 I 875
s otoGar3.GL873742           1538323 2 -   2232465 -AG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      968181 618 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I
e cebCap1.NW_016108108v1      229415 558 -    373274 I
e nomLeu3.chr1a             74182028 0 + 122973662 C

a score=7397.000000
s hg38.chr6_GL000254v2_alt    162780 1 +   4827813 G
s panTro5.chr6              29150278 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29384469 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184909 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29360705 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29021590 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2001708 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1873268 1 -   2157725 G
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28315758 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1998315 1 +   2316924 G
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1882771 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171404252 1 - 171630274 A
i calJac3.chr4             I 894 C 0
s saiBol1.JH378348            230428 1 -    375362 G
i saiBol1.JH378348         I 1 I 777
s otoGar3.GL873742           1538325 1 -   2232465 G
i otoGar3.GL873742         C 0 I 1
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      968181 618 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I
e aotNan1.NW_018494050v1      166297 875 -    285216 I
e cebCap1.NW_016108108v1      229415 558 -    373274 I
e nomLeu3.chr1a             74182028 0 + 122973662 C

a score=447243.000000
s hg38.chr6_GL000254v2_alt    162781 72 +   4827813 TGACCACTGCCAGGTCGGGGAACACAGCGGTAGTTTTTAAGGGGAGT---------GCACCACATCGCC-TGATCCACTTTT
s panTro5.chr6              29150279 72 + 175400573 TGACCACTGCCAGGTCGGGGAACACAGCGGCAGTTTTTAAGGGGAGT---------GCACCACATCGCC-TGACCCACTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29384470 72 + 173848474 TGACCACTGCCAGGTCGGGGAACACAGCGGCAGTTTTTAAGGGGAGT---------GCACCACATCGCC-TGACCCACTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184910 72 +   6154872 TGACCACTGCCAGGTCGGGGAACACAGCGGCAGTTTTTAAGGGGAGT---------GCACCACATCGCC-TGACCCACTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29360706 72 + 172585720 CGTCCACTGCCAGGTTGGGGAACACGGCGGCAGTTTTTAAGGGGAGT---------GCACCACATCGCC-TAACCCACTTTT
i rheMac8.chr4             C 0 I 4
s macFas5.chr4              29021591 72 - 170955103 CGTCCACTGCCAGGTCGGGGAACACGGCGGCAGTTTTTAAGGGGAGT---------GCACCACATCGCC-TAACCCACTTTT
i macFas5.chr4             C 0 I 4
s macNem1.NW_012011356v1     2001709 72 -   2996164 CGTCCACTGCCAGGTCGGGGAACACGGCGGCAGTTTTTAAGGGGAGT---------GCACCACATCGCC-TAACCCACTTTT
i macNem1.NW_012011356v1   C 0 I 4
s cerAty1.NW_012001495v1     1873269 72 -   2157725 TGTCCACTGCCAGGTCGGGGAACACGGCGGCAGTTTTTAAGGGGAGT---------GCACCACATCGCC-TAACCCACTTTT
i cerAty1.NW_012001495v1   C 0 I 4
s chlSab2.chr17             28315759 70 -  71996105 CGTCCACTGCCAGGTCGGGGAACACGGCGGCAGTTTTTAAGGGGAGT---------GCACCACATCGCC-TAACCCACTT--
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012104165v1     1998316 72 +   2316924 CGTCCACTGCCAGGTCGGGGAACACGGCGGCAGTTTTTAAGGGGAGT---------GCACCACATCGCC-TAACCCACTTTT
i manLeu1.NW_012104165v1   C 0 I 4
s colAng1.NW_012115566v1     1882772 71 -   3067355 TGTCCACTGCCAGGTCGGGGAACACGGCGGCAGTTTTTAA-GGGAGT---------GCACCACATCGCC-TGACCCACTTTT
i colAng1.NW_012115566v1   C 0 I 4
s calJac3.chr4             171404253 56 - 171630274 TGTCCACTGCCAGGTCGGGG-ACACGGCGGTAGTTTCTAAG------------------------CGCC-TACCCACTTTTT
i calJac3.chr4             C 0 I 4
s saiBol1.JH378348            231206 56 -    375362 TGTCCACTGCCAGGTCAGGG-ACACAGCAGCAGTTTTTAAG------------------------CATC-TGACCCACTTTT
i saiBol1.JH378348         I 777 I 4
s otoGar3.GL873742           1538327 80 -   2232465 TGTCCATTGCCAGGTCAGAGAACA--GTGGCAATTTTTAAGGGGGATGGTGGGTGAGAGCCACATCCCCTTAACCCACTTTT
i otoGar3.GL873742         I 1 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      968181 618 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I
e aotNan1.NW_018494050v1      166297 875 -    285216 I
e cebCap1.NW_016108108v1      229415 558 -    373274 I
e nomLeu3.chr1a             74182028  0 + 122973662 C

a score=178980.000000
s hg38.chr6_GL000254v2_alt    162853 19 +   4827813 ----CTGTTTCTCAGCCTTCGCC
s panTro5.chr6              29150351 19 + 175400573 ----CTGTTTCTCAGCCTTCGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29384542 19 + 173848474 ----CTGTTTCTCAGCCTTCGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5184982 19 +   6154872 ----CTGTTTCTCAGCCTTCGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29360782 19 + 172585720 ----CTGTTCCTCAGGCTTCGCC
i rheMac8.chr4             I 4 C 0
s macFas5.chr4              29021667 19 - 170955103 ----CTGTTCCTCAGGCTTCGCC
i macFas5.chr4             I 4 C 0
s macNem1.NW_012011356v1     2001785 19 -   2996164 ----CTGTTCCTCAGGCTTCGCC
i macNem1.NW_012011356v1   I 4 C 0
s cerAty1.NW_012001495v1     1873345 19 -   2157725 ----CTATTCCTCAGGCTTCGCC
i cerAty1.NW_012001495v1   I 4 C 0
s chlSab2.chr17             28315832 19 -  71996105 ----CTGCTCCTCAGCCTTCGCC
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012104165v1     1998392 19 +   2316924 ----CTGTTCCTCAGGCTTCGCC
i manLeu1.NW_012104165v1   I 4 C 0
s colAng1.NW_012115566v1     1882847 19 -   3067355 ----CTGTTCCTCAGCCTTCGCC
i colAng1.NW_012115566v1   I 4 C 0
s calJac3.chr4             171404313 19 - 171630274 ----CTGTTCCTTAGCCTTTGCC
i calJac3.chr4             I 4 C 0
s saiBol1.JH378348            231266 19 -    375362 ----CTGTTCCTCAGCCTTTGCC
i saiBol1.JH378348         I 4 C 0
s cebCap1.NW_016108108v1      229973 19 -    373274 ----CTGTTCCTCAGCCTTCGCC
i cebCap1.NW_016108108v1   I 558 C 0
s aotNan1.NW_018494050v1      167172 19 -    285216 ----CTGTTCCTCAGCCTTCGCC
i aotNan1.NW_018494050v1   I 875 C 0
s otoGar3.GL873742           1538407 23 -   2232465 CCAGCCGTTCCTCAGCCTTGTGC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      968181 618 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I
e nomLeu3.chr1a             74182028  0 + 122973662 C

a score=39849.000000
s hg38.chr6_GL000254v2_alt    162872 4 +   4827813 AAGC
s panTro5.chr6              29150370 4 + 175400573 AAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29384561 4 + 173848474 AAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5185001 4 +   6154872 AAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74182028 4 + 122973662 AAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29360801 4 + 172585720 AAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29021686 4 - 170955103 AAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2001804 4 -   2996164 AAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1873364 4 -   2157725 AAGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28315851 4 -  71996105 AAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1998411 4 +   2316924 AAGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1882866 4 -   3067355 AAGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171404332 4 - 171630274 AAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            231285 4 -    375362 AAGC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      229992 4 -    373274 CACC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      167191 4 -    285216 AAGC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1538430 4 -   2232465 TAGT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      968181 618 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I

a score=774698.000000
s hg38.chr6_GL000254v2_alt    162876 65 +   4827813 AATCTGAGCTCCAGGCCGGGAAGCCCCAAGGTCACAAATTTTAATGGAGCCCTGAAACTAAAC----AG
s panTro5.chr6              29150374 65 + 175400573 AATCTGAGCTCCAGGCCGGGAAGCCCCAAGGTCACAAATTTTAATGGAGCCCTGAAACTAAAC----AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29384565 65 + 173848474 AATCTGAGCTCCAGGCCGGGAAGCCCCAAGGTCACAAATTTTAATGGAGCCCTGAAACTAAAC----AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5185005 65 +   6154872 AATCTGAGCTCCAGGCCGGGAAGCCCCAAGGTCACAAATTTTAATGGAGCCCTGAAACTAAAC----AG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74182032 65 + 122973662 AATCTGAGCTCCAGGCCGGGAAGCCCCGAGGTCACAAATTTTAATGGAGCCCTGAAACTAAAC----AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29360805 65 + 172585720 AATCTGAGCACCAGGCCGGGAAACCCCGAGGTCACAAATTTTAATGGAGCCCTGAAACTAAAC----AG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29021690 65 - 170955103 AATCTGAGCACCAGGCCGGGAAACCCCGAGGTCACAAATTTTAATGGAGCCCTGAAACTAAAC----AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2001808 65 -   2996164 AATCTGAGCACCAGGCCGGGAAACCCCGAGGTCACAAATTTTAATGGAGCCCTGAAACTAAAC----AG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1873368 65 -   2157725 AATCTGAGCACCAGGCCGGGAAACCCCGAGGTCACAAATTTTAATGGAGCCCTGAAACTAAAC----AG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28315855 65 -  71996105 AATCTGAGCACCAGGCCGGGAAACCCCGAGGTCACAAATTTTAATGGAGCCCTGAAACTAAAC----AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1998415 65 +   2316924 AATCTGAGCACCAGGCCGGGAAACCCCGAGGTCACAAATTTTAATGGAGCCCTGAAACTAAAC----AG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1882870 69 -   3067355 AATCTGAGCACCAGTACGGGAAACCCCGAGGTCACAAATTTTAATGGAGCCCTGAAACTAAACGTTTAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171404336 65 - 171630274 AATCCAAGCTCCAAGCCAGGAAGTCCCGAGGTCGCAAACTTCAGTGGAGGCCTGAAACTAAAC----AG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            231289 65 -    375362 AATCCGATCTCCAAGCCAGGAAGCCCTGAGGTTGCAAACTTTAGTGGAGGCCTGAAACTAAAC----AG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      229996 65 -    373274 AATCCGAGCTCCAAGCCAGGAAGCCCCGAGGTCGCAAACTTTAGTGGAGGCCTGAAACTAAAC----AG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      167195 65 -    285216 AATCCGAGCTCCAAGCCAGGAAGCCCCGAGGTCGCAAACTTTAGTGGAGGCCTGAAACTAAAC----AG
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      968799 65 -   3516910 AATCTGAGCTCTGGGCCTGGAAGGCCAGAGGTCACATATTTTAATGGGACCCTAAAACTAAAC----AG
i proCoq1.NW_012147953v1   I 618 I 302
s otoGar3.GL873742           1538434 65 -   2232465 AATTTGAGTTCTGGGCCGGAAAGGCCCTTGGTTACATATTTTAATGGGGCCCTAAAACTAAGC----AG
i otoGar3.GL873742         C 0 I 4
e dasNov3.JH561790             51913 2668 -    302817 I
e canFam3.chr35             25897339 2468 +  26524999 I

a score=3003564.000000
s hg38.chr6_GL000254v2_alt    162941 304 +   4827813 AAATCATCCCTCCCACTAGAACAAGAGCCCCTAGAGGCCAGCGACAC--CGCTAAAATAACATGT--GTAGACCAATGCcgtccaggtaacagtg-----cctggcaaacacggtagaggttcaataaataCATTTTAACTCAACCGTCTTAACTCTTGTATTTGGGGCTGTGAGGTTCAGATAGAGGAAATATAAAGTTGGATATTTTAATTAGATTTT-GTCCTAATAGCTTAC-TTTTTGTATTTGT---TAATATAAAAAAAATTTCCTTTT------TGTAAGGCAAAG-TTAGGTCTCTTTTCTGCATGGAGAAATAAC-
s panTro5.chr6              29150439 310 + 175400573 AAATCATCCCTCCCACTAGAACAAGAGCCCCTAGAGGCCAGCGACAC--CGCTAAAATAACATAT--GTGGACCAATGCcgtccaggtaacagtg-----cctggcaaacacggtagaggttcaataaatatattttaaCTCAACCGTCTTAACTCTTGTATTTGGGGCTGTGAGGTTCAGATAGAGGAAATATAAAGTTGGATATTTTAATTAGATTTT-GTCCTAATAGCTTAC-TTTTTGTATTTGT---TAATATAAAGAAAATTTTCTTTTCTTTTTTGTAAGGCAAAG-TTAGGTCTCTTTTCTGCATGGAGAAATAAC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29384630 308 + 173848474 AAATCATCCCTCCCACTAGAACAAGAGCCCCTAGAGGCCAGCGACAC--CGCTAAAATAACATAT--GTGGACCAATGCcgtccaggtaacagtg-----cctggcaaacacggtagaggttcaataaatatattttaaCTCAACCGTCTTAACTCTTGTATTTGGGGCTGTGAGGTTCAGATAGAGGAAATATAAAGTTGGATATTTTAATTAGATTTT-GTCCTAATAGCTTAC-TTTTTGTATTTGT---TAATATAAAAAAA--TTTATTTTCCTTTTTGTAAGGCAAAG-TTAGGTCTCTTTTCTGCATGGAGAAATAAC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5185070 309 +   6154872 AAATCATCcctcccactagaacaagagcccctagaggccagggacac--cgctaaaataacatgt--gtagaccactgccgtccaggtaacagtg-----cctggcaaacacggtagaggttcaataaatatattttaaCTCAACCGTCTTAACTCTTGTATTTGGGGCTGTGAGGTTCAGATAGAGGAAATATAAAGTTGGATATTTTAATTAGATTTT-GTCCTAAGAGCTTAC-TTTTTGTATTTGT---TAATATAAAAAGA-TTTTCTTTTCCTTTTTGTAAGGCAAAG-TTAGGTCTCTTTTCTGCATGGAGAAATAAC-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74182097 313 + 122973662 AAATCATCCCTCCCACTAGAACAGGAGCCCCTAGAGGCCGGGGACAC--TGCTAAAATAACATGT--GTAGACAAATGCCGTCCAAGTAACAGTGCCTGCCCTGGCAAACACGGTAGAGGTTCAATAAATATATTTTAACTCGACTGTCTTAACTCTTGTATTTGGGGCTGTGAAGTTCAGATAGAGGAAATATAAAGTTGGATATTTTAATTAGATTTT-GTCCTAATAGGTTAC-TTTTTGTATTTGT---TAACGTAAAAAAA--TTTCTCTTCCTTTTTGTAAGGCAAAG-TTAGGTCTCTTTTCTGCATGGAGAAATAAC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29360870 310 + 172585720 AAATCATGcctcccactagaacaagagcccctagaggccggggacac--tgctaaaataacatgt--gtagaccaatgcagtccaggtaacagtg-----cctggcaaacacggtagaggttcaataaatgtattttaaCTCAACCGTCTTAACTCTTGTATTTGGGGCTGTGAAGTTCAGATAGAGGAAATATAAAGTTGGATATTTTAATTAGATTTT-GTCCTAACACGTTACTTTTTTGTATTTAT---TAACATAAAAAAA-TTTTATTTTCCGTTTTGTAAGGCAAAG-TTAGGTCTCTTTTCTGCATGGAAAAATAAC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29021755 310 - 170955103 AAATCATGcctcccactagaacaagagcccctagaggccggggacac--tgctaaaataacatgt--gtagaccaatgcagtccaggtaacagtg-----cctggcaaacacggtagaggttcaataaatgtattttaaCTCAACCGTCTTAACTCTTGTATTTGGGGCTGTGAAGTTCAGATAGAGGAAATATAAAGTTGGATATTTTAATTAGATTTT-GTCCTAACACGTTACTTTTTTGTATTTAT---TAACATAAAAAAA-TTTTATTTTCCGTTTTGTAAGGCAAAG-TTAGGTCTCTTTTCTGCATGGAAAAATAAC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2001873 309 -   2996164 AAATCATGcctcccactagaacaagagcccctagaggccggggacac--tgctaaaataacatgt--gtagaccaatgcagtccaggtaatagtg-----cctggcaaacacggtagaggttcaataaatgtattttaaCTCAACCGTCTTAACTCTTGTATTTGGGGCTGTGAAGTTCAGATAGAGGAAATATAAAGTTGGATATTTTAATTAGATTTT-GTCCTAACACGTTAC-TTTTTGTATTTAT---TAACATAAAAAAA-TTTTATTTTCCGTTTTGTAAGGCAAAG-TTAGGTCTCTTTTCTGCATGGAAAAATAAC-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1873433 309 -   2157725 AAATCATGCCTCCCACTAGAACAAGAGCCCCTAGAGGCCGGTGGCAC--TGCTAAAATAACATGT--GTAGACCAATGCAGTCCAGGTaacagtg-----cctggcaaacacggtagaggttcaataaatatattttaaCTCAACCGTCTTAACTCTTGTATTTGGGGCTGTGAAGTTCAGATAGAGGAAATATAAAGTTGGATATTTTAATTAGATTTT-GTCCTAATACGTTAC-TTTTTGTATTTAT---TAACATAAAAAAA-TTTTATTTTCCGTTTTGTAAGGCAAAG-TTAGGTCTCTTTTCTGCATGGAAAAATAAC-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28315920 308 -  71996105 AAATCATGcctcccactagaacaagagcccctagaggccagggacac--tgctaaaataacatgt--gtagaccaatgcagtccaggtaacagtg-----cctggcaaacacggtagaggttcaataaatatattttaaCTCAACCGTCTTAACTCTTGTATTTGGGGCTGTGAAGTTCAGATAGAGGAAACATAAAGTTGGATATTTTAATTAGATTTT-GTCCTAATACGTTAC-TTTTTGTATTTAT---TAACATAAAAAAT-TTTTATTTTCCGTTTTGTAAGGCAAAG-TTAGGTCTC-TTTCTGCATGGAAAAATAAC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1998480 309 +   2316924 AAATCATGCCTCCCACTAGAACAAGAGCCCCTAGAGGCCGGGGGCAC--TGCTAAAATAACATGT--GTAGACCAATGCAGTCCGGGTaacagtg-----cctggcaaacacggtagaggttcaataaatatattttaaCTCAACCGTCTTAACTCTTGTATTTGGGGCTGTGAAGTTCAGATAGAGGAAATATAAAGTTGGATATTTTAATTAGATTTT-GTCCTAATACGTTAC-TTTTTGTATTTAT---TAACATAAAAAAA-TTTTATTTTCCGTTTTGTAAGGCAAAG-TTAGGTCTCTTTTCTGCATGGAAAAATAAC-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1882939 311 -   3067355 AAATCATGCCTCCCACTAGAACAAGAGCCCCTAGAGGCCAGGGACAC--TGCTAAAATAACATGTCCGTAGACCAATGCCGTCCAGGTAACAGTG-----CCTGGCAAACACGGTATAGGTTCAATAAATACATTTTAACTCAACCGTCTTAACTCTTGTATTTGGGGCTGTGAAGTTCAGAGAGAGGAAATATAAAGTTGGATATTTTAATTAGATTTT-GTCCTAATACGTTAC-TTTTTGTATTTAT---TAACATTAAAAAA-TTTTATTTTCCTTTTTGTAAGGCAAAG-TTAGGTCTCTTTTCTGCATGGAAAAATAAC-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171404401 308 - 171630274 AAATGACTCCTTCAGGTAGAACA-GAGTCCG-AGAGGCCCGGGACAC--TGCTAAAATAACGTGT--GCAGACCAACACCGCCCAGGTGGCAGTG-----CCTGGCAAACACGGTACAGGTGCAATACATGTATTTTAACTCAACCGTCATAACTCTTGTATTTGGGGCTGTGAAATTCAGATAGAGGAAATATAAAGTTGGATGTTTTAATTAGATTTT-GTCCCAATAGGTTAC-TTTCTGTGTTTATTAATAACATAAAACAT-TTTCCTTTTCCTTTTTGTAAGGCAAAGCTTAGGTC---TTTCTGCATGGAAAATAGCC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            231354 299 -    375362 AAATGACTCCTTCAAGTAGAACA-GAGTCCT-AGAGGCTGGGGACAC--TGCTAAAATGACGTGT--GCAGACCAACGCCGCCCAGGTGGCAGTG-----CCTGGCGAACATAGTACAGGTGCAATACATGTATTTTAACTCAACCGTCATAACTCTTGTATTTGGGGCTGTGAAATTCAGATAGAGGAAATATAAAGTTGGATATTTTAATTAGATTTT-GTCCCAATAAGTTAC-TTTCTGTATT------TAACATAAAACAT-TTTCCTTTTC------GTAAGGCAAAGCTTAGGCCTCTTTTCTGCATGGAAAATAGCC-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      230061 305 -    373274 AAATGACTCCTTCAGGTAGAACA-GAGTCCC-AGAGGCCGGGGACAC--TGCTAAAATGACGTGT--GCAGACCAACACAGCCCAGGTGGCAGTG-----CCTGGCAAACACGGTACAGGTGCAATACATGTATTTTAACTCAACCGTCATAACTCTTGTATTTGGGGCTGTGATATTCAGATAGAGGAAATAGAAAGTTGGATGTTGTAATTAGATTTT-GTCCCAATAAGTTAC-TTTCTGTATT------TAACATAAAACAT-TTTCCTTTTCCTTTTAGTAAGGCAAAGCTTAGGTCTCTTTTCTGCATGGAAACTAGCC-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      167260 308 -    285216 AAATGACTCCTTCAAGTAGAACA-GAGTCCC-AGAGGCCGGGGACAC--TGCTAAAATAACGTGT--GCAGACCAACGCCGCCCAGGTGGCAGAG-----CCTGGCAAACACGGTACAGGTGCAATACACGTATTTTAACTCGACCGTCATAACTCTTGTATTTGGGGCTGTGAAATTCAGATAGAGGAGATACAAAGTTGGATGTTTTAATTAGATTTT-GTCCCAATAGGTTAC-GTTCTGTATTTAT---TAACATACAACAT-TTTCCTTTTCCTTTTTGTAAGGCAAAGCTTAGGTCTCTTTTCTGCATGGAAAACAGCC-
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1538503 295 -   2232465 AAATTATtcctccaactagaatgagagcccttcggcgtcaggaacattgtgctaaaataaccttt--gttggccaaatgctgccagg--acagtg-----tctgggaaacgtggtagaggctaaataaatgtatttgaaCTCAACCATTGTAACTACTGTA---------------ATCAGAAAGCAGAAATATAGTCTTGGGAATTTTAATTAGATTTTAGTCTTAATAGGCTAT-TTTTTGTACTTAT---TAACTTGCAAACG-TTTCCTTT--CTTTTCGTAATACAAAAGTTAGGTCTCTTTTCTTCATGGAGACATAATT
i otoGar3.GL873742         I 4 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      968864 302 -   3516910 I
e canFam3.chr35             25897339 2468 +  26524999 I

a score=1238798.000000
s hg38.chr6_GL000254v2_alt    163245 112 +   4827813 TGAGTTTCAGTAGGCTCTATCTTA-ATTTCCACAGACTTCCTTGGTTTCATATCCTATTTTTGAT----AGAGAGAAA-------ATTAGTAGTGAGAAGTACAGTGAACACTGGTTCCCC-AGT
s panTro5.chr6              29150749 112 + 175400573 TGAGTTTCAGTAGGCTCTATCTTA-ATTTCCACAGACTTCCTTGGTTTCATATCCTATTTTTGAT----AGAGAGAAA-------ATTAGTAGTGAGAACTACAGTGAACACTGGTTCCCC-AGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29384938 112 + 173848474 TGAGTTTCAGTAGGCTCTATCTTA-ATTTCCACAGACTTCCTTGGTTTCATATCCTATTTTTGAT----AGAGAGAAA-------ATTAGTAGTGAGAAGTACAGTGAACACTGGTTCCCC-AGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5185379 112 +   6154872 TGAGTTTCAGTAGGCTCTATCTTA-ATTTCCATAGACTTCCTTGGTTTCATATCCTATTTTTGAT----AGAGAGAAA-------ATTAGTAGTGAGAAGTACAGTGAACACTGGTTCCCC-AGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74182410 112 + 122973662 TGAGTTTCAGTAGGCTCTATCTTA-ATTTCCATAGACTTCCTTGGTTTCATATCCTATTTTTGAT----AGAGAGAAA-------ATTAGTAGTGAGAAGTACAGTGAACACTGGTTCCCC-ACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29361180 111 + 172585720 TGAGTTTCAGTAGGCTCTATCTTA-ATTTCCATTGACTTGCTTGGTTTCATATCCTATTTTTGAT----AGAGAGAAA-------ATTAGT-TCGAGAAGTACAGTGAACACTGGTTCCCC-AGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29022065 111 - 170955103 TGAGTTTCAGTAGGCTCTATCTTA-ATTTCCATTGACTTGCTTGGTTTCATATCCTATTTTTGAT----AGAGAGAAA-------ATTAGT-TCGAGAAGTACAGTGAACACTGGTTCCCC-AGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2002182 111 -   2996164 TGAGTTTCAGTAGGCTCTATCTTA-ATTTCCATTGACTTGCTTGGTTTCATATCCTATTTTTGAT----AGAGAGAAA-------ATTAGT-TCGAGAAGTACAGTGAACACTGGTTCCCC-AGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1873742 111 -   2157725 TGAGTTTCAGTAGGCTCTATCTTA-ATTTCCATTGACTTCCTTGGTTTCACATCCTATTTTTGAT----AGAGAGAAA-------ATTAGT-TCGAGAAGTACAGTGAACACTGGTTCCCC-AGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28316228 108 -  71996105 TGAGTTTCAGTAGGCTCCATCTTA-ATTTCCATTGACTTCCTTGGTTTCATATCCTATTTTTGAT----AGAGAGAAA-------ATTAGT-TCG---AGTACAGTGAACACTGGTTCCCC-AGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1998789 111 +   2316924 TGAGTTTCAGTAGGCTCTATCTTT-ATTTCCATTGACTTCCTTGGTTTCATATCCTATTTTTGAT----AGAGAGAAA-------ATTAGT-TCGAGAAGTACAGTGAACATTGGTTCCCC-AGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1883250 108 -   3067355 TGAGTTTCAGTAGGC----TCTTA-ATTTCCATTGACTTCCTTGGTTTCATATCCTATTTTTGAT----AGAGAGAAA-------ATTAGTAGTGAGAAGTACAGTGAACACTGGTTCCCC-AGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171404709 112 - 171630274 TGAGTTTCAGTAGGCTCTATCTTA-ATTTCCACAGACTTTCTTTGTTTCATATCTTATTTTTGAT----AAAGACAAA-------GTTAGTCGTGAGAATAACAGTGAAGACTGGTTCCCC-AGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            231653 113 -    375362 TGAGTTTCAGTAGGCTGTATCTTA-ATTTCCACAGACTTCCTTGGTTTCATATCTTATTTTTGAT----AAAGACAAA-------GTTAGCCGTGAGAAGTACAGTGAAGACTGGTTCCCCTAGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      230366 112 -    373274 TGAGTTTCAGTAGGCTCTATCTTA-ATTTCCACAGACTTCCTTGGTTTCATATCTTATTTTTGAT----AAAGACAAA-------GTTAGTTGTAAGAAGTACAGCGAAGACCGGTTTCCC-AGT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      167568 112 -    285216 TGAGTTTCAGTAGGCTCTACCTTA-ATTTCCACAGACTTCCTTGGTTTCGTATCTTATTTTTGAT----AAAGACAAA-------GTTAGTCGTGAGAAGTACAGTGAAGACTGTTTCCCC-AGT
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      969166 123 -   3516910 TGAGTTTCAGTAGGCCCTATCTTAGATTTCCATAGACTTCCTTGGTTTTATATCCTATTTTTGATAATTAAAGAGAAATGGGTAGATGGGTAGTGAGAA-TACAACGAACACTGGTTTCCT-AGT
i proCoq1.NW_012147953v1   I 302 C 0
s otoGar3.GL873742           1538798 116 -   2232465 TGCGTTCCAGTATGCCCTGTCTTTGATTTCCATAGACTTCCTTAGTTTCATGATTT-TTTTTTTTTTTGACAGAGAAA-------ATGGGTAGTGAGAAGTACAATAAACACTAATTTTCC-AAT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e canFam3.chr35             25897339 2468 +  26524999 I

a score=1369957.000000
s hg38.chr6_GL000254v2_alt    163357 126 +   4827813 C----TCCCTCCAAT-ACATGAGATTTG-T-ATATTTTCTTTCG--------------ATTGGAAGGAAATTGTCCAGGAAGTGATTCCCAACATGGCAACTGTAATCTTACCCTAA----CTAT---AA-TTA-tt----ttttt-ctaattgcaaagta
s panTro5.chr6              29150861 126 + 175400573 C----TCCCTCCAAT-ACATGAGATTTG-T-ATATTTTCTTTCG--------------ATTGGAAGGAAATTGTCCAGGAAGTGATTCCCAACATGGCAACTGTAATCTTACCCTAA----CTAT---AA-TTA-tt----ttttt-ctaattgcaaagta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29385050 126 + 173848474 C----TCCCTCCAAT-ACATGAGATTTG-T-ATATTTTCTTTCG--------------ATTGGAAGGAAATTGTCCAGGAAGTGATTCCCAACATGGCAACTGTAATCTTACCCTAA----CTAT---AA-TTA-tt----ttttt-ctaattgcaaagta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5185491 122 +   6154872 C----TCCCTCCAAT-ACATGAGATTTG-T-ATATTTTCTTTCG--------------ATTGGAAGGAAATTGTCCAGGAAGTGATTCCCAACATGGCAACTGTAATCTTACCCTAA----CTAT---AA------T----TTTTT-TTAATTGCAAAGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74182522 126 + 122973662 C----TCCCTCCAAT-ACATGAGATTTG-T-ATATTTTCTTTCG--------------ATTGGAAGGAAATTGTCCAGGAAGTGATTCCCAACTTGGCAACTGTAATCTTACCCTAA----CTAT---AA-TTA-tt----ttttt-ctaattgcaaagta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29361291 126 + 172585720 C----TCCCTCCAAT-ACATGAGATTTG-T-ATATTTTCTTTCG--------------ATTGGAAGGAAATTGTCCAGGAAGTGATTCCCAACATGGCAACTGTAATCTTACCCTAC----TTAT---AA-TTA-tt----ttttt-ctaattgcaaagta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29022176 126 - 170955103 C----TCCCTCCAAT-ACATGAGATTTG-T-ATATTTTCTTTCG--------------ATTGGAAGGAAATTGTCCAGGAAGTGATTCCCAACATGGCAACTGTAATCTTACCCTAC----TTAT---AA-TTA-TT----TTTTT-CTAATTGCAAAGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2002293 127 -   2996164 C----TCCCTCCAAT-ACATGAGATTTG-T-ATATTTTCTTTCG--------------ATTGGAAGGAAATTGTCCAGGAAGTGATTCCCAACATGGCAACTGTAATCTTACCCTAC----TTAT---AA-TTAttt----ttttt-ctaattgcaaagta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1873853 126 -   2157725 C----TCCCTCCAAT-ACATGAGATTTG-T-ATATTTTCTTTCG--------------ATTGGAAGGAAATTGTCCAGGAAGTGATTCCCAACATGGCAACTGTAATCTTACCCTAC----TTAT---AA-TTA-tt----ttttt-ctaattgcaaagta
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28316336 126 -  71996105 T----TCCCTCCAAT-ACATGAGATTTG-T-ATATTTTCTTTCG--------------ATTGGAAGGAAATTGTCCAGGAAGTGATTCCCAACATGGCAACTGTAATCTTACCGTAC----TTAT---AA-TTA-TT----TTTTT-CTAATTGCAAAGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1998900 126 +   2316924 C----TCCCTCCAAT-ACATGAGATTTG-T-ATATTTTCTTTCG--------------ATTGGAAGGAAATTGTCCAGGAAGTGATTCCCAACATGGCAACTGTAATCTTACCCTAC----TTAT---AA-TTA-tt----ttttt-ctaattgcaaagta
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1883358 126 -   3067355 C----TCCCTCCAAT-ACATGAGATTTG-T-ATATTTTCTTTCG--------------ATTGAAAGGAAATTGTCCAGGAAGTGATTCCCAACATGGCAACTGTAATCTTACCCTAT----TTAT---AA-TTA-TT----TTTTT-CTAATTGCAAAGTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171404821 126 - 171630274 C----TCCCTCCAAC-ACATGAAATTTC-T-ATATTTTCTTTCG--------------ATTGGAAGGAAGTTGTCCAGGAAGTGATTCCCAACTTGACAACTGTAATC---CCCTAA----CTATTCATA-CTA-CT----TTTTT-CTAATTGCATAGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            231766 121 -    375362 C----TCCCTCCAAC-ACATGAAATTTC-T-GTATTTTCTTTCG--------------ATTGGAAGT-TGTCGTCCAGGAAGTGATTCCCAACATGGCAACTGTAATC---CC--------CTATTTATA-CCA-CT----TTTTC-CTAATTGCAAAGTA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      230478 127 -    373274 C----TCCCTCCAAC-ACATGAAATTTC-T-GTATTTTCTTTTG--------------ATTGGAAGGAAGTTGTCCAGGAAGTGATTCCCAACATGGCAACTGTAATC---CCCTAA----CTATTTATA-TCA-CT----TTTTCTCTAATTGCAAAGTA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      167680 127 -    285216 C----TCCCTCCAACAACATGAAATTTC-T-ATATTTTCTTTCG--------------ATTGGAAGGAAGTTGTCCAGGAAGTGATTCCCAACATGGCAACTGTAATC---CCCTAA----CTATTTATA-CTA-CT----TTTTT-CTAATTGCAAAGTG
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      969289 143 -   3516910 CAATCTCCCTCCAAG-ATATGAGATATG-GTATATTTCCTTTCATAAGCTATAGTTCTATTAGAAGGAAGTTATCCCAGAAGTGATTCCCAACATGGCAACAGTAACC---CCTTAA----TTATTTATA---A-tt----ttttt-ctaattgcaaagta
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1538914 135 -   2232465 TAAT-------CAAG-TTACGAAATATG-TATAATTTTCTCCCATAAGCTATAGTTATGTT---GGGAAGTTAT-CAGGAAGTGATTTCCAACACGGCAACAGTAACC---CCTTAA----TTATTTGTATATA-TA----TTTTT-CTAATTGCAAAGTA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25899807 142 +  26524999 C----TCCTTCAAAG-GTGTGAGATTTGCT-GTACTTTCATAAG----CTGTAGTCCTGTGGGAAGGAAGTTGTCCCAGAAATGATTCTAGATGTGGCAATTTCAAGT---TCCTAAAAATTTGT---AA-TTA-TTACTGTTTTT-CTGATTGCAAGCTA
i canFam3.chr35            I 2468 C 0
e dasNov3.JH561790             51913 2668 -    302817 I

a score=960703.000000
s hg38.chr6_GL000254v2_alt    163483 89 +   4827813 cacacaaattgtagaacatacaaacatgtcaaaaattaaaatcatccataatctcactagtcagaggt----aactattaacatttttata--ta
s panTro5.chr6              29150987 89 + 175400573 cacacaaattgtagaacatacaaacatgtcaaaaattaaaatcatccataatctcactagtcagaggt----aactattaacatttttata--ta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29385176 89 + 173848474 cacacaaattgtagaacatacaaacatgtcaaaaattaaaatcatccataatctcactagtcagaggt----aactattaacatttttata--ta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5185613 89 +   6154872 CACACaaattgtagaacatacaaacatgtcaaaaattaaaatcatccataatctcactagtcagaggt----aactattaacatttttata--ta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74182648 89 + 122973662 cacacaaattgtagaacatacaaacatgtcaaaaattaaaattatccataatctcactaatcagaggt----aactattaacatttttata--ta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29361417 89 + 172585720 cacacaaattgtagaacacacaaacatgtcaaaaattaaaattacccataatctcactagtcagaagt----aactattaacatttttata--ta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29022302 89 - 170955103 CACACAAATTGTAGAACACACAAACATGTCAaaaattaaaattacccataatctcactagtcagaagt----aactattaacatttttata--ta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2002420 89 -   2996164 cacacaaattgtagaacacacaaacatgtcaaaaattaaaattacccataatctcactagtcagaagt----aactattaacatttttata--ta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1873979 89 -   2157725 cacacaaattgtagaacatacaaacatgtcaaaaattaaaattacccataatctcactagtcagaagt----aactattaacatttttata--ta
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28316462 85 -  71996105 CACACAAATTGTAGAACATACAAACATGTCAAAAATTAA----ACCCATAATCTCACTAGTCAGAAGT----AACTATTAACATTTTTATA--TA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1999026 89 +   2316924 cacacaaattgtagaacatacaaacatgtcaaaaattaaaattacccataatctcactagtcagaagt----aactattaacatttttata--ta
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1883484 87 -   3067355 CACACaaattgtagaacatacaa--aggtcaaaaattaaagttactcataatctcactagtcagaagt----aactattaacatttttatg--ta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171404947 85 - 171630274 CACACAAATTGTAGAACAAACAGACATGCC-AAGATTAAAATTATCCACTGTCTCACTAGTCAGAGGT----AACTATT-ACATTTTTATA----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            231887 86 -    375362 CACACAAATTGTAGAACATACAAACGTGCC-AAGATTGAAATTATCCACTATCTCACTAGTCCGAGGT----AACTATTAACATTTTTATA----
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      230605 88 -    373274 CACACAAATTGTAGAACATACAAACATGCC-AAAATTAAAATTATCCACTATCTCACTAGTCAGAGGT----AACTATTAACATTTTTATATA--
i cebCap1.NW_016108108v1   C 0 I 1592
s aotNan1.NW_018494050v1      167807 86 -    285216 TACACAAACTGTAGAACATACAAACATGCC-AAGATTAAAATTATCCACTATCTCACTAGTCAGAGGT----AACTATTAACATTTTTATA----
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      969432 93 -   3516910 cacataaattgttgaaaatacaaatatgtcaaaaataaaacttatccatactctcactagtcagaggttaactactattaacattttgata--ta
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1539049 84 -   2232465 CACACAAATTGTTGAAAGTACAAATTAAGTCAAAATAAAAATTATCTATACT----CTAGTCAGAGGT----AATTACTAACATTTC-ATG--TA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e canFam3.chr35             25899949  0 +  26524999 C

a score=234628.000000
s hg38.chr6_GL000254v2_alt    163572 23 +   4827813 tt------tagtctttcatatggtataca
s panTro5.chr6              29151076 23 + 175400573 tt------tagtctttCATATGGCATACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29385265 23 + 173848474 tt------tagtctttCATATGGCATACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5185702 23 +   6154872 tt------tagtctttCATATGGCATACA
i gorGor5.CYUI01015250v1   C 0 I 1
s nomLeu3.chr1a             74182737 23 + 122973662 tt------tagtctttCATATGGCATACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29361506 23 + 172585720 tt------tagtctttcatatggcataca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29022391 23 - 170955103 tt------tagtctttcatatggcataca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2002509 23 -   2996164 tt------tagtctttcatatggcataca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1874068 23 -   2157725 tt------tagtctttcatatggcataca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28316547 23 -  71996105 TT------TAGTCTTTCATATGGCATACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1999115 23 +   2316924 tt------tagtctttaatatggcataca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1883571 23 -   3067355 tt------tagtctttcatatggcatata
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171405032 21 - 171630274 --------TAGTCTTTCATATGGCATACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            231973 21 -    375362 --------TAGCCTTTCACATGGCATGTA
i saiBol1.JH378348         C 0 I 1776
s aotNan1.NW_018494050v1      167893 21 -    285216 --------TAGTCTTTCATATGGCATACA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      969525 29 -   3516910 ttttactctagtttttcatatggcacaca
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1539133 21 -   2232465 TT------TAGTTTTTCAAATG--CTATA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e canFam3.chr35             25899949  0 +  26524999 C
e cebCap1.NW_016108108v1      230693 1592 -    373274 I

a score=502042.000000
s hg38.chr6_GL000254v2_alt    163595 61 +   4827813 ttttttcc--aaaaatggtcatgtgtagtaaataatttgctaacttgctttctaaatgaatat
s panTro5.chr6              29151099 61 + 175400573 TTTTTTCC--AAAAATGGTCATGTGTAGTAAATAATTTGCTAACTTGCTTTCTAAATGAATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29385288 61 + 173848474 TTTTTTCC--AAAAATGGTCATGTGTAGTAAATAATTTGCTAACTTGCTTTCTAAATGAATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5185726 61 +   6154872 TTTTTTCC--AAAAATGGTCATGTGTAGTAAATAATTTGCTAACTTGCTTTCTAAATGAATAT
i gorGor5.CYUI01015250v1   I 1 C 0
s nomLeu3.chr1a             74182760 53 + 122973662 TTTTTTCCA-AAAAATGGTCATGTGTAG----TAATTTGCTAACTTGCTTTCTAAATG-----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29361529 62 + 172585720 ttttttcca-aaaaatggtcatgtgtggtaaataatttgctaacttgctttctaaatgagtat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29022414 62 - 170955103 ttttttcca-aaaaatggtcatgtgtggtaaataatttgctaacttgctttctaaatgagtat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2002532 62 -   2996164 ttttttcca-aaaaatggtcatgtgtggtaaataatttgctaacttgctttctaaatgagtat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1874091 62 -   2157725 ttttttcca-aaaaatggtcatgtgtggtaaataatttgctaacttgctttctaaatgagtat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28316570 62 -  71996105 TTTTTTCCA-AAAAATGGTCATGTGTGGTAAATAATTTGCTAACTTGCTTTCTAAATGAGTAT
i chlSab2.chr17            C 0 I 3621
s manLeu1.NW_012104165v1     1999138 62 +   2316924 ttttttcca-aaaaatggtcatgcgtggtaaataatttgctaacttgctttctaaatgagtat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1883594 62 -   3067355 ttttttcca-aaaaatggccatgtgcggtaaataatttgctaacttgctttctaaatgagtat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171405053 63 - 171630274 TTTTTTCCAGAAAAATGGTCATGCGTAGTACATAATTTGCTAACTTGCTTTTTAAACGAATAT
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1      167914 63 -    285216 TTTTTTCCAAAAAAATGGTCATGTGTAGTACATAATTTGCTAACTTGCTTTTTAAACGAATAT
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      969554 58 -   3516910 tttTTTCCC-AA----GGTCATGTGTAGTACATACTTTGCTAACTTGCTTTTTAAATGAAAAT
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1539154 47 -   2232465 TTTTTTCCC-CA----AGTCAGGTGTACTACATACT--------TTGTTTATTAAAT---AAT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e canFam3.chr35             25899949  0 +  26524999 C
e saiBol1.JH378348            231994 1776 -    375362 I
e cebCap1.NW_016108108v1      230693 1592 -    373274 I

a score=63903.000000
s hg38.chr6_GL000254v2_alt    163656 8 +   4827813 attatgaa
s panTro5.chr6              29151160 8 + 175400573 ATTATGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29385349 8 + 173848474 ATTATGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5185787 8 +   6154872 ATTATGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74182813 8 + 122973662 ATTATGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29361591 8 + 172585720 attacgaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29022476 8 - 170955103 attacgaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2002594 8 -   2996164 attacgaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1874153 8 -   2157725 attacgaa
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     1999200 8 +   2316924 attacgaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1883656 8 -   3067355 attacgaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171405116 8 - 171630274 ATGATGAA
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1      167977 8 -    285216 ATGATGAA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      969612 8 -   3516910 ATTATGAA
i proCoq1.NW_012147953v1   C 0 I 1311
s otoGar3.GL873742           1539201 8 -   2232465 ATTATGAG
i otoGar3.GL873742         C 0 I 2
e dasNov3.JH561790             51913 2668 -    302817 I
e canFam3.chr35             25899949 0 +  26524999 C
e saiBol1.JH378348            231994 1776 -    375362 I
e cebCap1.NW_016108108v1      230693 1592 -    373274 I
e chlSab2.chr17             28316632 3621 -  71996105 I

a score=102986.000000
s hg38.chr6_GL000254v2_alt    163664 17 +   4827813 ta--tatacttgctaagta
s panTro5.chr6              29151168 17 + 175400573 TA--TATACTTGCTAAGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29385357 17 + 173848474 TA--TATACTTGCTAAGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5185795 17 +   6154872 TA--TATACTTGCTAAGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74182821 18 + 122973662 CAT-TATACTTGCTAAGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29361599 19 + 172585720 catatatacctgctaagta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29022484 19 - 170955103 catatatacctgctaagta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2002602 19 -   2996164 catATATACCTGCTAAGTA
i macNem1.NW_012011356v1   C 0 I 1159
s cerAty1.NW_012001495v1     1874161 19 -   2157725 catatatacctgctaagta
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     1999208 19 +   2316924 catatatacctgctaagta
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1883664 19 -   3067355 catatatacctgctaagta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171405124 19 - 171630274 CGTATATATTTGCTAAGTA
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1      167985 19 -    285216 CATATATATTTGCTAAGTA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1539211 17 -   2232465 --TATGTACTTTACAAGTA
i otoGar3.GL873742         I 2 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e canFam3.chr35             25899949  0 +  26524999 C
e saiBol1.JH378348            231994 1776 -    375362 I
e cebCap1.NW_016108108v1      230693 1592 -    373274 I
e chlSab2.chr17             28316632 3621 -  71996105 I

a score=23400.000000
s hg38.chr6_GL000254v2_alt    163681  5 +   4827813 ctata-----------
s panTro5.chr6              29151185  5 + 175400573 CTATA-----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29385374  5 + 173848474 CTATA-----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5185812  5 +   6154872 CTATA-----------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74182839  5 + 122973662 CTATA-----------
i nomLeu3.chr1a            C 0 I 4
s rheMac8.chr4              29361618  5 + 172585720 ctata-----------
i rheMac8.chr4             C 0 I 475
s macFas5.chr4              29022503  5 - 170955103 ctata-----------
i macFas5.chr4             C 0 I 4
s cerAty1.NW_012001495v1     1874180  5 -   2157725 ctata-----------
i cerAty1.NW_012001495v1   C 0 I 1953
s manLeu1.NW_012104165v1     1999227  5 +   2316924 ctata-----------
i manLeu1.NW_012104165v1   C 0 I 4
s colAng1.NW_012115566v1     1883683  5 -   3067355 ctata-----------
i colAng1.NW_012115566v1   C 0 I 4
s calJac3.chr4             171405143  5 - 171630274 CTATA-----------
i calJac3.chr4             C 0 I 4
s aotNan1.NW_018494050v1      168004  5 -    285216 CTATA-----------
i aotNan1.NW_018494050v1   C 0 I 4
s otoGar3.GL873742           1539228 16 -   2232465 CTGAAGTCAAATATTA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e canFam3.chr35             25899949  0 +  26524999 C
e saiBol1.JH378348            231994 1776 -    375362 I
e cebCap1.NW_016108108v1      230693 1592 -    373274 I
e chlSab2.chr17             28316632 3621 -  71996105 I
e macNem1.NW_012011356v1     2002621 1159 -   2996164 I

a score=63908.000000
s hg38.chr6_GL000254v2_alt    163686 15 +   4827813 ttttgtataaatctt
s panTro5.chr6              29151190 15 + 175400573 TTTTGTATAAATCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29385379 15 + 173848474 TTTTGTATAAATCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5185817 15 +   6154872 TTTTGTATAAATCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74182848 15 + 122973662 TTTTGTATAAATCTT
i nomLeu3.chr1a            I 4 C 0
s macFas5.chr4              29022512 15 - 170955103 ttttgtataaatttt
i macFas5.chr4             I 4 I 453
s manLeu1.NW_012104165v1     1999236 15 +   2316924 ttttgtataaatctt
i manLeu1.NW_012104165v1   I 4 I 449
s colAng1.NW_012115566v1     1883692 15 -   3067355 ttttgtataaatctt
i colAng1.NW_012115566v1   I 4 I 1320
s calJac3.chr4             171405152 14 - 171630274 TCTTGTATAAA-CTT
i calJac3.chr4             I 4 C 0
s aotNan1.NW_018494050v1      168013 15 -    285216 TTTTGTATAAATCTA
i aotNan1.NW_018494050v1   I 4 C 0
s otoGar3.GL873742           1539244 15 -   2232465 TTTTGCATAAATTTT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e canFam3.chr35             25899949  0 +  26524999 C
e saiBol1.JH378348            231994 1776 -    375362 I
e cebCap1.NW_016108108v1      230693 1592 -    373274 I
e chlSab2.chr17             28316632 3621 -  71996105 I
e cerAty1.NW_012001495v1     1874185 1953 -   2157725 I
e macNem1.NW_012011356v1     2002621 1159 -   2996164 I
e rheMac8.chr4              29361623 475 + 172585720 I

a score=404.000000
s hg38.chr6_GL000254v2_alt    163701 5 +   4827813 aattc
s panTro5.chr6              29151205 5 + 175400573 AATTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29385394 5 + 173848474 AATTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5185832 5 +   6154872 AATTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74182863 5 + 122973662 AATTC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171405166 2 - 171630274 AA---
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1      168028 2 -    285216 AA---
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1539259 4 -   2232465 -AATG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e canFam3.chr35             25899949 0 +  26524999 C
e saiBol1.JH378348            231994 1776 -    375362 I
e cebCap1.NW_016108108v1      230693 1592 -    373274 I
e colAng1.NW_012115566v1     1883707 1320 -   3067355 I
e manLeu1.NW_012104165v1     1999251 449 +   2316924 I
e chlSab2.chr17             28316632 3621 -  71996105 I
e cerAty1.NW_012001495v1     1874185 1953 -   2157725 I
e macNem1.NW_012011356v1     2002621 1159 -   2996164 I
e macFas5.chr4              29022527 453 - 170955103 I
e rheMac8.chr4              29361623 475 + 172585720 I

a score=138882.000000
s hg38.chr6_GL000254v2_alt    163706 62 +   4827813 ctgcacat-attccatatcaaagtggtattcttgaaaactggattatttctaattttttattt
s panTro5.chr6              29151210 62 + 175400573 CTGCACAT-ATTCCATATCAAAGTGGtattcttgaaaactggattatttctaattttttattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29385399 61 + 173848474 CTGCACAT-ATTCCATATCAAAGTGGTATTCCTGAAAACtggattatttctaa-tttttattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5185837 62 +   6154872 CTGCACAT-ATTCCATATCAAAGTGGTATTCTTGAACACTGGATTATTTCTGATTTTTTATTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74182868 62 + 122973662 TTGCAAAT-ATTCCATATCAAAGTGGtattcttgaacactggattatttctaattttttattt
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171405168 58 - 171630274 CAGCAGAT-ATTCCATATCAAACTGGTGTTCTTGAATACTGGA----ttctaattttttattt
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1      168030 62 -    285216 CTGCAGAT-ATTCCATATCAAACTGGTGTTCTTAAACATTGGATTCCTTCTAATTTCTTATTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1539263 63 -   2232465 ATGCAGATAAACCCATTTCAAAcccatattgttcaatactggattatttctaatcctttgttg
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25899949 62 +  26524999 CTGCAGAC-ACCTCACATCAAACCGGtactgttgaacattggattatttctaatttcttactc
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e saiBol1.JH378348            231994 1776 -    375362 I
e cebCap1.NW_016108108v1      230693 1592 -    373274 I
e colAng1.NW_012115566v1     1883707 1320 -   3067355 I
e manLeu1.NW_012104165v1     1999251 449 +   2316924 I
e chlSab2.chr17             28316632 3621 -  71996105 I
e cerAty1.NW_012001495v1     1874185 1953 -   2157725 I
e macNem1.NW_012011356v1     2002621 1159 -   2996164 I
e macFas5.chr4              29022527 453 - 170955103 I
e rheMac8.chr4              29361623 475 + 172585720 I

a score=168571.000000
s hg38.chr6_GL000254v2_alt    163768 89 +   4827813 tcatcagcaatgc-tgtaaaaactatccttac----ataaatattttcaaacatccacgattatttccttaaatttctaaaagtgaaaccatta
s panTro5.chr6              29151272 89 + 175400573 tcatcagcaatgc-tgtaaaaactatccttac----ataaatattttcaaacatccatgattatttccataaatttctaaaagtgaaaccatta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29385460 89 + 173848474 tcatcagcaatgc-tgtaaaaactatccttac----ataaatattttcaaacatccatgattatttccataaatttctaaaagtgaaaccatta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5185899 89 +   6154872 TCATCAGCAATGC-TGTAAAAACTATCCTTAC----ATAAATATATTCAAACATCCATGATTATTTCCTTAAATTTCTAAAAGTGAAACCATTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74182930 89 + 122973662 tcatgagcaatgc-tgtaaaaactatccttac----ataaatattttcaaacatccataattatttccttaaatttctagaagtgaaaccatta
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171405226 89 - 171630274 tcatgagcaatgc-tgtaaaaactatccttgc----ataagtatttccaaacatccgtaattatttccttaactttctagaagtgaaaACAGTA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1539326 93 -   2232465 tcatgagcagtgcttataaagaccccttttgtgtagacaagtattttcagacat-cgtaattatttccttaaatttctagaagtgaaatcatta
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25900011 88 +  26524999 ttgtcagcaatgc-tgtaaagaacattcttct----gtagatattttca-atatccataattatttccttacctttcttgaagtggaatcccta
i canFam3.chr35            C 0 I 425
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e saiBol1.JH378348            231994 1776 -    375362 I
e aotNan1.NW_018494050v1      168092  0 -    285216 C
e cebCap1.NW_016108108v1      230693 1592 -    373274 I
e colAng1.NW_012115566v1     1883707 1320 -   3067355 I
e manLeu1.NW_012104165v1     1999251 449 +   2316924 I
e chlSab2.chr17             28316632 3621 -  71996105 I
e cerAty1.NW_012001495v1     1874185 1953 -   2157725 I
e macNem1.NW_012011356v1     2002621 1159 -   2996164 I
e macFas5.chr4              29022527 453 - 170955103 I
e rheMac8.chr4              29361623 475 + 172585720 I

a score=4346.000000
s hg38.chr6_GL000254v2_alt    163857 21 +   4827813 catcaa---attt------ttttttttttt
s panTro5.chr6              29151361 19 + 175400573 catcaa-----tt------ttttttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29385549 13 + 173848474 catcaa-----------------ttttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5185988 17 +   6154872 TATCAA-------------AAAtttttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74183019 24 + 122973662 catcaattttttt------ttttttttttt
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171405315 28 - 171630274 TATCAA--TGTTTATCCAGTTTTTTGCTGT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1539419 21 -   2232465 gatcaa---agtt------tatccagtttt
i otoGar3.GL873742         C 0 I 540
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e canFam3.chr35             25900099 425 +  26524999 I
e saiBol1.JH378348            231994 1776 -    375362 I
e aotNan1.NW_018494050v1      168092  0 -    285216 C
e cebCap1.NW_016108108v1      230693 1592 -    373274 I
e colAng1.NW_012115566v1     1883707 1320 -   3067355 I
e manLeu1.NW_012104165v1     1999251 449 +   2316924 I
e chlSab2.chr17             28316632 3621 -  71996105 I
e cerAty1.NW_012001495v1     1874185 1953 -   2157725 I
e macNem1.NW_012011356v1     2002621 1159 -   2996164 I
e macFas5.chr4              29022527 453 - 170955103 I
e rheMac8.chr4              29361623 475 + 172585720 I

a score=46691.000000
s hg38.chr6_GL000254v2_alt    163878 41 +   4827813 tttttttttgagacggagtctcgct-ctgtcacccagggtgg
s panTro5.chr6              29151380 41 + 175400573 tttttttttgagacggagtctcgct-ctgtcactcagggtgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29385562 41 + 173848474 tttttttttgagacggagtctcgct-ctgtcactcagggtgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5186005 41 +   6154872 tttttttttgagacggagtctcgct-ctgtcacccagggtgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74183043 41 + 122973662 tttttttttgagacggagtctccct-ctgtcacccagggtgg
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171405343 42 - 171630274 CGTTGttttgagatggagtttctctcctgttgcccagactgg
i calJac3.chr4             C 0 I 1335
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e canFam3.chr35             25900099 425 +  26524999 I
e saiBol1.JH378348            231994 1776 -    375362 I
e otoGar3.GL873742           1539440 540 -   2232465 I
e aotNan1.NW_018494050v1      168092  0 -    285216 C
e cebCap1.NW_016108108v1      230693 1592 -    373274 I
e colAng1.NW_012115566v1     1883707 1320 -   3067355 I
e manLeu1.NW_012104165v1     1999251 449 +   2316924 I
e chlSab2.chr17             28316632 3621 -  71996105 I
e cerAty1.NW_012001495v1     1874185 1953 -   2157725 I
e macNem1.NW_012011356v1     2002621 1159 -   2996164 I
e macFas5.chr4              29022527 453 - 170955103 I
e rheMac8.chr4              29361623 475 + 172585720 I

a score=208388.000000
s hg38.chr6_GL000254v2_alt    163919 247 +   4827813 agtgcagtagcacgacttg--gctcactgcaacttccacctctcgggttcacaccattctcttgcctcagcctcccgagtagctgggactataggcgcccgtcacgacgcccggctaatttttgtatttttagtagagacggggtttcactatgttggtcaggctggtctcgaactcctgacctcttgatccgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc
s panTro5.chr6              29151421 247 + 175400573 agtgcagtagcacgacttg--gctcactgcaacttccacctcccgggttcacaccattctcttgcctcagcctcccgagtagctgggactgtaggcgcccgtcacgacgcccggctaatttttgtatttttagtagagacggggtttcattatgttggtcaggctggtctcgaactcctgacctcttaatccgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29385603 245 + 173848474 agtgcagtagcacgacttg--gctcactgcaacttccacctcccgggttcacaccattctcttgcctcagcctcccgagtagctgggactgtaggcgcccgtcacgacgcccggcta--ttttgtatttttagtagagacggggtttcattatgttggtcaggctggtctcgaactcctgacctcttgatccgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5186046 249 +   6154872 agtgcagtggcacgacttggtgctcactgcaacttccacctcccgggttcacaccattctcttgcctcagcctcccgagcagctgggactataggcgcccgtcacgacgcccggctaatttttgtatttttagtagagacggggtttcactatgttggtcaggctggtctcgaactcctgaactcttgatccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74183084 230 + 122973662 agtgcagtggcgcgacttg--gctcactgcaacttccacctcccgggttcacaccattctcctgcctcagcctcccgagtagctgggaatataggcgccagccaccacgcccggctaatttttgtatttttagtagagatacggtttcactatgttggtcaggctggtctcgaa-----------------cgcctgccttggcctcccaaagttctgggattacaggtgtgagccaccgcacctggcc
i nomLeu3.chr1a            C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e canFam3.chr35             25900099 425 +  26524999 I
e saiBol1.JH378348            231994 1776 -    375362 I
e otoGar3.GL873742           1539440 540 -   2232465 I
e aotNan1.NW_018494050v1      168092   0 -    285216 C
e cebCap1.NW_016108108v1      230693 1592 -    373274 I
e calJac3.chr4             171405385 1335 - 171630274 I
e colAng1.NW_012115566v1     1883707 1320 -   3067355 I
e manLeu1.NW_012104165v1     1999251 449 +   2316924 I
e chlSab2.chr17             28316632 3621 -  71996105 I
e cerAty1.NW_012001495v1     1874185 1953 -   2157725 I
e macNem1.NW_012011356v1     2002621 1159 -   2996164 I
e macFas5.chr4              29022527 453 - 170955103 I
e rheMac8.chr4              29361623 475 + 172585720 I

a score=6125.000000
s hg38.chr6_GL000254v2_alt    164166 3 +   4827813 TAC
s panTro5.chr6              29151668 3 + 175400573 TAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29385848 3 + 173848474 TAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5186295 3 +   6154872 TAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74183314 3 + 122973662 CAC
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29022980 3 - 170955103 tat
i macFas5.chr4             I 453 C 0
s chlSab2.chr17             28320253 3 -  71996105 tac
i chlSab2.chr17            I 3621 C 0
s manLeu1.NW_012104165v1     1999700 3 +   2316924 tac
i manLeu1.NW_012104165v1   I 449 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e canFam3.chr35             25900099 425 +  26524999 I
e saiBol1.JH378348            231994 1776 -    375362 I
e otoGar3.GL873742           1539440 540 -   2232465 I
e aotNan1.NW_018494050v1      168092 0 -    285216 C
e cebCap1.NW_016108108v1      230693 1592 -    373274 I
e calJac3.chr4             171405385 1335 - 171630274 I
e colAng1.NW_012115566v1     1883707 1320 -   3067355 I
e cerAty1.NW_012001495v1     1874185 1953 -   2157725 I
e macNem1.NW_012011356v1     2002621 1159 -   2996164 I
e rheMac8.chr4              29361623 475 + 172585720 I

a score=1019650.000000
s hg38.chr6_GL000254v2_alt    164169 390 +   4827813 ATCAATGTTTATCC-AGt-ttttgtttgtttgttt-tgacggagttttgctctgttgcccaggctggagtgcagtggcatgatcttagctcacagcaac--ctatctcccaggttcaagtgat--tctcgtctcagcctcccgagtagctggaactacacgcatgagccatcacactcagctaatttttttt-tgtatttttagtagaaacagggtttcaccatgttggtcaggctggtctcaaactcctgacctcaaatgatgtgcccgcctcggcctcccaaagtgctgggattacaggcgtgacccaccgctcctggcAcattttaataggtaacaaatgatatag--cgcccccc---cttttttttct---------gatttgattattagtgaggtccaatattca
s panTro5.chr6              29151671 389 + 175400573 ATCAATGTTTATCC-AGt-ttttgtttgtttgtttgttttggagttttgctctgttgcccaggctggagtgcagtggcgtgatcttagctcacagcaac--ctatctcccaggttcaagtgat--tctcgtctcagcctcccgagtagctggaactacacgcatgagccatcacactcagctaatttttttt--gtatttttagtagaaacagggtttcaccatgttggtcaggctggtctcaaactcctgacctcaaacgatgtgcccgcctcggcctcccaaagtgctgggattacaggcgtgacccaccgctcctggcACATTTTAATAGGTAACAAATGATATAG--CCCCCCCC---CCTTTTTTT-T---------GATTTGATTATTAGTGAGGTCCAATATTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29385851 390 + 173848474 atcaatgtttatcctagt-ttttgtttgtttgtttgttttggagttttgctctgttgcccaggctggagtgcagtggcgtgatcttagctcacagcaac--ctatctcccaggttcaactgat--tctcgtctcagcctcccgagtagctggaactacacgcatgagccatcacactcagctaattttttt---gtatttctagtagaaacagggtttcaccatgttggtcaggctggtctcaaactcctgacctcaaatgatgtgcccgcctcggcctcccaaagtgctgggattacaggcgtgacccaccgctcctggcacattttaataggtaacaaatgatatag--ccccccac---ctttttttttt---------gatttgattattagtgaggtccaatattca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5186298 392 +   6154872 ATCAATGTTTATCC--At-ttttttttgtttgttt-tgacggagttttgctctgttgcccaggctggagtgcagtggcatgatcttagctcacagcaac--ctatgtcccagcttcaagtgat--tctcgtctcagcctcccgagtagctggaactacatgcatgagccatcacattcagctaattttttttttggatttttagtagaaacagggtttcaccatgttggtcaggctggtctcaaactcctgacctcaaatgatgcgcccgcctcggcctcccaaagtgctgggattacaggcgtgacccaccactcctggcAcattttaataggtaacaaatgatatagcccccccccc---cttttttttct---------gatttgattattagtgaggtccaatattca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74183317 388 + 122973662 ATCAATGTTTATCC-AGt-tt---tttgttttttt-tgacggag-tttgctctgttgcccaggctggagtgcaatggcatgatctcggctcactgcaac--ctatctcccaggttcaaatgattctctcgtctcagcctcccgagtagctggaactacaagcatgagccatcacgcctggctaatttttttt--gtatttttagtagaaac--tgtttcaccacgttggtcaggctggtctcaaactcctgacctcaaatgatgcgcccgtctcggcctcccaaagtgctgggattacaggcgtgacccaccgcgcctggcAcattttaataggtaaaaaatgttatag--ccccccccactttttttttttt---------tacatatttattagtgaggttcaatattca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29362098 395 + 172585720 atcaaTATTTATCC-AGC-tttttttttttttttt-tgactgagttttgctctgttgcccaggctggagtgcagtggcacgatctcagctcactgcaacctctgtctcctgggttcaagtaattctcttgcctcagcctcccgagtagctggaactacatgcatgcgccaccacgcccggctaattttttt---gtatttt---tagagacagggtttcaccaagttggtcaggctggtctcaaactcgtgacctcaaatgatgcgcccgcctcggcctccc--agtgctgggattacaggcgtgacccaccgtgcccagTAcattttaataggtaaaaaatgatatgg--cttttttt---tttttttttttttttttacagatttg-ttattagtgaggttcaatattca
i rheMac8.chr4             I 475 C 0
s macFas5.chr4              29022983 395 - 170955103 atcaaTATTTATCC-AGC-tttttttttttttttt-tgactgagttttgctctgttgcccaggctggagtgcagtggcatgatctcagctcactgcaacctctgtctcctgggttcaagtaattctcttgcctcagcctcccgagtagctggaactacatgcatgcgccaccacgcccggctaattttttt---gtatttt---tagagacagggtttcaccaagttggtcaggctggtctcaaactcgtgacctcaaatgatgcgcccgcctcggcctccc--agtgctgggattacaggcgtgacccaccgtgcccagTACGTtttaataggtaaaaaatgatatgg--cttttttt---tttttttttttttttttacagatttg-ttattagtgaggttcaatattca
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28320256 387 -  71996105 atcaaTGTTTATCC-AGC------ttttttttttg-tgactgagttttgctctgttgcccaggctggagtgcagtggcatgatctcagctcactgcaacctctgtctcctgggttcaagtaattctcttgcctcagcctcctgagtagctggaactacatgcatgcgccaccacgcccggctaattttttt---gtatttt---tagagacagggtttcaccaagtaggtcaggctggtctcaaactcgtgacctcaaatgatgcgcccgcctctgcctccc--agtgctgggattacaggcgtgacccaccgtgcccagTACGTtttaataggtaaaaaatgatatgg--c---tttt---tttttttttttttttttacagatttg-ttattagtgaggttcaatattca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     1999703 394 +   2316924 atcaaTGTTTATCC-AGCttttttttttttttttt-tgactgagttttgctctgttgcccaggctggagtgcagtggcatgatctcagctcactgcaacctctgtctcctgggttcaagtaattctcttgcctcagcctcccgagtagctggaactacatgcatgcgccaccacgcccggctaattttttt---gtatttt---tagagacagggtttcaccaagttggtcaggctggtctcaaactcgtgacctcaaatgatgcgcctgcctcggcctccc--agtgctgggattacaggcgtgaCCCACCGTGACCAGTACGTtttaataggtaaaaaatgacatgg--c--ttttt---tttttttttttttttttacagatttg-ttattagtgaggttcaatattca
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e canFam3.chr35             25900099 425 +  26524999 I
e saiBol1.JH378348            231994 1776 -    375362 I
e otoGar3.GL873742           1539440 540 -   2232465 I
e aotNan1.NW_018494050v1      168092   0 -    285216 C
e cebCap1.NW_016108108v1      230693 1592 -    373274 I
e calJac3.chr4             171405385 1335 - 171630274 I
e colAng1.NW_012115566v1     1883707 1320 -   3067355 I
e cerAty1.NW_012001495v1     1874185 1953 -   2157725 I
e macNem1.NW_012011356v1     2002621 1159 -   2996164 I

a score=2441779.000000
s hg38.chr6_GL000254v2_alt    164559 660 +   4827813 tgtttaaaggatttttatactccttcctcagtaaattgcttaccaaatttttatgaggtgtccatctttccttattgatttgtaagacttatttTATGAAAAGTAAACTCTTGGGatacagtttctatttaccaagaacccaagcagaaattcctatctcttattaacaagaatcccattatgtcccttaaacatttagttacttccatcttacagaaactagaagctatacaattaacaatgttcccatgtcaatttttaaaacccaactgtggcccacatttagtgtcctcgta--gttttcatactatagattcacttctaatcctggtcattttttgtgccatc---------------------tt--tttttttaatgagacggagtctcgcactgtcacccgggttggtgtgcagtggcgcaatctcggcttgcttcaagctctgcctcccaggttcaagcaattttcctgcctcagcctcccaagtagctgggactacaggctcgtgccaccatgcccagctaatttttgtatttttagtagaaatggggtttttcactatgttggccaggctggtcttgaactcctgacctcgtaatctgcgtgccggggcctcccaaggtgctgggattacaggcgtgagccaccgcgcccggctgtgccgtatttttt--ctttct
s panTro5.chr6              29152060 643 + 175400573 TGTTTAAAGGATTTTTATGCTCCTTCCTCAGTAAATTGCTTACCAAATTTTTATGAGGTGTCCATCTTTCCTTATTGATTTGTAAGACTTATTTTATGAAAAGTAAACTCTTGGGATACAGTTTCTATTTACCAAGAACCCAAGCAGAAATTCCTCTCTCTTATTAACAAGAATCCCATTATGTCCCTTAAACATTTAGTTACTTCCATCTTACAGAAACTAGAAGCTATACAATTAACAATGTTCCCATGTCAATTTTTAAAACCCAACTGTGGCCCACATTTAGTGTCCTCGTA--GTTTTCATACTATAGATTCACTTCTAATCCTGGTCATTTTTTGTGCCATC---------------------TT--TTTTTTTAATGAGAc------------------ccgggttggtgtgcagtggcgcgatctcggcttgcttcaacctctgcctcccaggttcaagcaattttcctgcctcagcctcccaagtagctgggactacaggctcgtgccaccatgcccagctaatttttgtatttttagtagaaatggggtttttcactatgttggccaggctggtcttgaactcctgacctcgtaatctgcgtgcctgggcctcccaaggtgctgggattacaggcgtgagccaccgcgcccggcTGTGCCATAtttttt-tctttct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29386241 643 + 173848474 tgtttaaaggatttttatgctccttcctcagtaaattgcttaccaaatttttatgaggtgtccatctttccttattgatttgtaagacttatttTATGAAAAGTAAACTCTTGGGATACAGTTTCTATTTACCAAGAACCCAAGCAGAAATTCCTCTCTCTTATTAACAAGAATCCCATTATGTCCCTTAAACATTTAGTTACTTCCATCTTACAGAAACTAGAAGCTATACAATTAACAATGTTCCCATGTCAATTTTTAAAACCCAACTGTGGCCCACATTTAGTGTCCTCGTA--GTTTTCATACTATAGATTCACTTCTAATCCTGGTCATTTTTTGTGCCATC---------------------TT--TTTTTTTAATGAGAc------------------ccgggttggtgtgcagtggcgcgatctcggcttgcttcaacctctgcctcccaggttcaagcaattttcctgcctcagcctcccaagtagctgggactacaggctcgtgccaccatgcccagctaatttttgtatttttagtagaaatggggtttttcactatgttggccaggctggtcttgaactcctgacctcgtaatctgcgtgcctgggcctcccaaggtgctgggattacaggcgtgagccaccgcgcccggcTGTGCCATATTTTTT-TCTTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5186690 659 +   6154872 tgtttaaaggatttttatactcctttctcagtaaattgcttaccaaatttttatgaggtgtccatctttccttattgatttgtaagacttatttTATGAAAAGTAAACTCTTGGGatacagtttctatttaccaagaacccaagcagaaattcctatctcttattaacaagaatcccattatgtcccttaaacatttagttacttccatcttatagaaactagaagctatacaattaacaatgttcccatgtcaatttttaaaacccaactgtggcccacatttagtgtcctcgta--gttttcatactatagattcacttctaatcctggtcattttttgtgccatc----------------------t--tttttttaatgagacggagtctcgcactgtcacccgggttggtgtgcagtggcgcgatctcggcttgcttcaacctctgactcccaggttcaagcaattttcctgcctcagcctcccaagtagctgggactacagactcgtgccaccatgcccagctgatttttgtatttttagtagaaatggggtttttcactatgttggccaggctggtcttgaactcctgacctcgtgatctgcgtgcctgggcctcccaaggtgctgggattacaggcatgagccaccgcgcccggctgtgccatatttttt--ctttct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74183705 659 + 122973662 tgtttgaaggattttcatactccttcctcagtaaattgcttgccaaatttttatgaggtgtccatctttctttattgatttgtaagacttatttTATGAAAAGTAAACTCTTGGGATACAGTTTCTATTTACCAACAACCCAAGCAGAAATTCCTATCTCTTATTAACAAGAATCCCATTATGTCCCTTAAATATTTAGTTATTTCCATCTTATGGAAACTAGAAGCTATACAATTAACAAGGTTCCCATGTCAATTTTTAAAACCCAACTGTGGCCCACATTTAGTGAT--------GTTTTCATACTATAGATTCACTTCTAATCCTGGTCATTTTTTGTGCCATCttt----------------tttt--ttttttttatgagacagagtctggcactgtcacccgggttggtgtgcagtggcgcgatcttggcttgcttcaacctctgcctcccgggttcaagcaattctcctgcctcagcctcccaagtagctgggactacaggtgcgtgccaccatgcctggctaatttttgtatttttagtagaaatggggtttttcactatgttggccaggctggcctcgaacccctgacctcataatccgtgtgcctgggcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggcTGTGCCATATTTTTT--CTTTCT
i nomLeu3.chr1a            C 0 I 312
s rheMac8.chr4              29362493 684 + 172585720 tgtttaaaggatttttatacttcttcctcagtaaactgcttaccaaatttttatgaggtgtccatctttccttattgatttgtaagacttatttTATGAAAAGTAAACTCTTGGGatacagtttctatttaccgagaacccaagcagaaattcctctctcttactaacaagaatcccattatgtcccttaaacatttaattatttccatcttatggaaactaggagtcatacaattaacaaggttcccatgtcaatttttaaaacccaactgtggcccacatttagtgtcctcgtaatgttttcatactatagatttacctctaatcatggtcattttttgtgccatcttttttctttttgtttttctttc--ttttttttttgagatggagtctcacactgtcagccgggtaggtgtgcagcagcgcaatcttggcttgctgcaacctctgcctccctcgtccaagcaattctcctacctcagcctcccaagtagctgggactacaggcgcctgccaccatgcc-agctaatttttgtatttttagtagagacagggtttttcactatgttggccaggctggtctcgaactcctgacctcgtgatctgcaagcctcggcctcccgaagtgcggggattacaggtgtaagccaccacgcccggctgaaccatattttttttctttct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29023378 684 - 170955103 tgtttaaaggatttttatacttcttcctcagtaaactgcttaccaaatttttatgaggtgtccatctttccttattgatttgtaagacttatttTATGAAAAGTAAACTCTTGGGatacagtttctatttaccgagaacccaagcagaaattcctctctcttactaacaagaatcccattatgtcccttaaacatttaattatttccatcttatggaaactaggagtcatacaattaacaaggttcccatgtcaatttttaaaacccaactgtggcccacatttagtgtcctcgtaatgttttcatactatagatttacctctaatcatggtcattttttgtgccatcttttttctttttgtttttctttc--ttttttttttgagatggagtctcacactgtcagccgggtaggtgtgcagcagcgcaatcttggcttgctgcaacctctgcctccctcgtccaagcaattctcctacctcagcctcccaagtagctgggactacaggcgcctgccaccatgcc-agctaatttttgtatttttagtagagacagggtttttcactatgttggccaggctggtctcgaactcctgacctcgtgatctgcaagcctcggcctcccgaagtgcagggattacaggtgtaagccaccacgcccggctgaaccatattttttttctttct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2003780 684 -   2996164 TGTTTAAAGGATTTTTACACTTCTTCCTCAGTAAACTGCTTACCAAATTTTTATGAGGTGTCCATCTTTCCTTATTGATTTGTAAGACTTATTTTATGAAAAGTAAACTCTTGGGatacagtttctatttaccgagaacccaagcagaaattcctctctcttactaacaagaatcccattatgtcccttaaacatttaattatttccatcttatggaaactaggagtcatacaattaacaaggttcccatgtcaatttttaaaacccaactgtggcccacatttagtgtcctcgtaatgttttcgtactatagatttacctctaatcatggtcattttttgtgccatcttttttctttttgtttttctttc--ttttttttttgagatggagtctcacactgtcagccgggtaggtgtgcagcagcgcaatcttggcttgctgcaacctctgcctccctcgtccaagcaattctcctacctcagcctcccaagtagctgggactacaggcgcctgccaccttgcc-agctaatttttgtatttttagtagagacagggtttttcactatgttggccaggctggtctcgaactcctgacctcgtgatctgcaagcctcggcctcccgaagtgcggggattacaggtgtaagccaccacgcccggctgaaccatattttttttctttct
i macNem1.NW_012011356v1   I 1159 C 0
s chlSab2.chr17             28320643 671 -  71996105 tgtttaaaggatttttatacttcttcctcagtaaattgcttaccaaatttttatgaggtgtccatctttccttattgatttgtaagacttatttTATGAAAAGTAAACTCTTGGGatacagtttctatttaccgagaacccaagcagaaattcctatctcttactaacaagaatcccattatgtcccttaaacatttaattatttccatcttatggaaactaggagtcatacaattaacaaggttcccatgtcaatttttaaaacccaactgtggc-------------ccttgtaatgttttcatactacagatttacctctaatcatggtcattttttgtgccatcttttttctttttgtttttctttcttttttttttttgggacggagtctcacactgtcagccgggtaggtgtgcagcagcgcaatcttggcttgctgcaacctctgcctccctggtccaagcaattctcctgcctcagcctcccaagtagctaggactacaggcgcctgccaccatgcc-agctaatttttgtatttttagtagagacagggtttttcac--tgttggccaggctggtctcgaactcctgacctcgtgatctgaaagcctcggcctcccaaagtgtggggattacaggtgtaaaccaccacgcccggctgaaccatattttttttctttct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2000097 685 +   2316924 tgtttaaaggatttttatacttcttcctcagtaaactgcttaccaaatttttatgaggtgtccatctttccttattgatttgtaagacttatttTATGAAAAGTAAACTCTTGGGATACAGTTTCTATTTACCGAGAACCCAAGCAGAAATTCCTCTCTCTTACTAACAAGAATCCCATTATGTCCCTTAAACATTTAATTATTTCCATCTTATGGAAACTAGGAGTCTTACAATTAACAAGGTTCCCATGTCAATTTTTAAAACCCAACTGTAGCCCACATTTAGTGTCCTCGTAATGTTTTCATACTATAGACTTACCTCTAATCATGGTCATTTTTTGTGCCATCTTTTttctttttgtttttctttc-tttttttttttgagatggagtctcacactgtcagccgggtaggtgtgcaacagcgcaatcttggcttgctgcaacctctgcctccctggtccaagcaattctcctacctcagcctcccaagtagctgggactacaggcgcctgccaccatgcc-agctaatttttgtatttttagtagagacagggtttttcactatgttggccaggctggtctcgaactcctgacctcgtgatctgcaagcctcggcctcccaaagtgcggggattacaggtgtaagccaccacgcccggcTGAACCATATTTTTTTTCTTTCT
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e canFam3.chr35             25900099 425 +  26524999 I
e saiBol1.JH378348            231994 1776 -    375362 I
e otoGar3.GL873742           1539440 540 -   2232465 I
e aotNan1.NW_018494050v1      168092   0 -    285216 C
e cebCap1.NW_016108108v1      230693 1592 -    373274 I
e calJac3.chr4             171405385 1335 - 171630274 I
e colAng1.NW_012115566v1     1883707 1320 -   3067355 I
e cerAty1.NW_012001495v1     1874185 1953 -   2157725 I

a score=166390.000000
s hg38.chr6_GL000254v2_alt    165219 56 +   4827813 tcctttatggcatgttaaactcctgatgtcttgattttatgggtttgttttgg-ttt
s panTro5.chr6              29152703 56 + 175400573 tcctttacggcatgttaaactcctgatgtcttgattttatgggtttgttttgt-ttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29386884 39 + 173848474 TCCTTTACGGCATGTTAAACTCCTGATGTCTTGATTTTA------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5187349 57 +   6154872 tcctttatggcatgttaaactcctgatgtcttgattttatgggtttgttttggtttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74184676 55 + 122973662 TCCTTTATGGCATGTTAAACTCCTGATATCTTGATTTTATGGGtttgttttgg--tt
i nomLeu3.chr1a            I 312 C 0
s rheMac8.chr4              29363177 56 + 172585720 tcctttatggcatgttaaactcctgatatctcaattttatggttttttgttgt-tgc
i rheMac8.chr4             C 0 I 8
s macFas5.chr4              29024062 56 - 170955103 tcctttatggcatgttaaactcctgatatctcaattttatggttttttgttgt-tgc
i macFas5.chr4             C 0 I 8
s macNem1.NW_012011356v1     2004464 56 -   2996164 tcctttatggcatgttaaactcctgatatctcaattttatggttttttgttgt-tgc
i macNem1.NW_012011356v1   C 0 I 8
s chlSab2.chr17             28321314 56 -  71996105 tcctttatggcatgttaaactcctgatatctcaattttatggttttttgttgt-tgc
i chlSab2.chr17            C 0 I 8
s manLeu1.NW_012104165v1     2000782 56 +   2316924 TCCTTTATGGCATGTTAAACTCCTGATAACTCAATTTTATAGttttttgttgt-tgc
i manLeu1.NW_012104165v1   C 0 I 8
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e canFam3.chr35             25900099 425 +  26524999 I
e saiBol1.JH378348            231994 1776 -    375362 I
e otoGar3.GL873742           1539440 540 -   2232465 I
e aotNan1.NW_018494050v1      168092  0 -    285216 C
e cebCap1.NW_016108108v1      230693 1592 -    373274 I
e calJac3.chr4             171405385 1335 - 171630274 I
e colAng1.NW_012115566v1     1883707 1320 -   3067355 I
e cerAty1.NW_012001495v1     1874185 1953 -   2157725 I

a score=649170.000000
s hg38.chr6_GL000254v2_alt    165275 143 +   4827813 tttttgagatggagtcttg--------------------ctctgctgcccaggctggagtgcagtggtgcaatcttggctcactgcaacctccgcctcctgggttccagcaattctcccgtctcagcctcccgagtcg---ggattacagaaatgc--accaccacac
s panTro5.chr6              29152759 146 + 175400573 tttttgagatggagtcttg--------------------ctctgctgcccaggctggagtgcagtggtgcaatcttggctcactgcaacctccgcctcctgggttccagcaattctcccgtctcagccttccgagtagctaggattacagaaatgc--accaccacac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29386923 149 + 173848474 -----------------TGNNNNNNNNNNNNNNNNNNNNctctgctgcccaggctggagtgcagtggtgcaatcttggctcactgcaacctccgcctcctgggttccagcaattctcccgtctcagcctcccgagtagctaggattacagaaatgc--accaccacac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5187406 146 +   6154872 tttttgagatggagtcttg--------------------ctctatcgcccaggctggagtgcagtggtgcaatcttggctcactgcaacctccgcctcctgggttccagcaattctcccgtctcagcctcccgagtagctaggattacagaaatgc--accaccacac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74184731 146 + 122973662 tttttgagatggagtcttg--------------------ctctgtggcccaggctggagtacagtggtgcgatcttggctcactgcaacctccacctcctgggttcaagcaattctcccacctcagcctcctgagtagctaggattaccgacacgc--accaccacac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29363241 148 + 172585720 tttttgagatggagtcttg--------------------ctctgttgcccaggctggagtgcagtggtgcaatcttggctcactgcaacttccgcctcctgggttcaagcgattctcctgtctcagcctccggagtagctaggattacagacaggctgaccaccatac
i rheMac8.chr4             I 8 C 0
s macFas5.chr4              29024126 148 - 170955103 tttttgagatggagtcttg--------------------ctctgtcgcccaggctggagtgcagtggtgcaatcttggctcactgcaacttccgcctcctgggttcaagcgattctcccgtctcagcctccggagtagctaggattacagacaggctgaccaccatac
i macFas5.chr4             I 8 C 0
s macNem1.NW_012011356v1     2004528 148 -   2996164 tttttgagatggagtcttg--------------------ctctgtcgcccaggctggagtgcagtggtgcaatcttggctcactgcaacttccgcctcctgggttcaagcgattctcccgtctcagcctccggagtagctaggattacagacaggctgaccaccatac
i macNem1.NW_012011356v1   I 8 C 0
s cerAty1.NW_012001495v1     1876138 148 -   2157725 tttttgagatggagttttg--------------------ctctgtcgcccaggctggagtgcagtggtgcaatcttggctcactgcaacttccgcctcccgggttcaagcgattctcccgtctcagcctccggagtagctaggattacggacatgctgaacaccatac
i cerAty1.NW_012001495v1   I 1953 C 0
s chlSab2.chr17             28321378 146 -  71996105 tttttgagatggagtcttg--------------------ctctgtcgcccaggctggagtgcagtggtgcaatcttggctcactgcaacttccgcctcctgggttcaagcgattctcccatctcagcctctggagtagctaggattacagacatgt--accaccatgc
i chlSab2.chr17            I 8 C 0
s manLeu1.NW_012104165v1     2000846 148 +   2316924 tttttgagatggagtcttg--------------------ctctgtcgcccaggctggagtgcagtggtgcaatcttggctcactgcaacttccgcctcctgggttcaagcgattctctcgtctcagcctccggagtagctaggattacagacatgctgaccaccatac
i manLeu1.NW_012104165v1   I 8 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e canFam3.chr35             25900099 425 +  26524999 I
e saiBol1.JH378348            231994 1776 -    375362 I
e otoGar3.GL873742           1539440 540 -   2232465 I
e aotNan1.NW_018494050v1      168092   0 -    285216 C
e cebCap1.NW_016108108v1      230693 1592 -    373274 I
e calJac3.chr4             171405385 1335 - 171630274 I
e colAng1.NW_012115566v1     1883707 1320 -   3067355 I

a score=121286.000000
s hg38.chr6_GL000254v2_alt    165418 22 +   4827813 ctggctaatttttgtattttta
s panTro5.chr6              29152905 22 + 175400573 ctggctaatttttgtattttta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29387072 21 + 173848474 ctggctaa-ttttgtattttta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5187552 22 +   6154872 ctggctaatttttgtattttta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74184877 22 + 122973662 atggctaatttttgtattttta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29363389 22 + 172585720 ctggctaatttttgtattttta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29024274 22 - 170955103 ctggctaatttttgtattttta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2004676 22 -   2996164 ctggctaatttttgtattttta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1876286 22 -   2157725 ctggctaatttttgtattttta
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28321524 22 -  71996105 ctggctaatttttgtattttta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2000994 21 +   2316924 ctggctaatttttgta-tttta
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1885027 22 -   3067355 ctggctaatttttgtattttta
i colAng1.NW_012115566v1   I 1320 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e canFam3.chr35             25900099 425 +  26524999 I
e saiBol1.JH378348            231994 1776 -    375362 I
e otoGar3.GL873742           1539440 540 -   2232465 I
e aotNan1.NW_018494050v1      168092  0 -    285216 C
e cebCap1.NW_016108108v1      230693 1592 -    373274 I
e calJac3.chr4             171405385 1335 - 171630274 I

a score=733548.000000
s hg38.chr6_GL000254v2_alt    165440 111 +   4827813 gtagagatgggg--tttcaccgtgttggccaggctggtcttgaactcctgacctcaggtgatccgcccgcctcagccttccaaagtgct--------ggtgtgagccaccgagcccagaca
s panTro5.chr6              29152927 111 + 175400573 gtagagatgggg--tttcaccgtgttggccaggctggtcttgaactcctgacctcaggtgatccgcccgcctcagccttccaaagtgct--------ggtgtgagccaccgagcccagaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29387093 111 + 173848474 gtagagatgggg--tttcaccgtgttggccaggctgatcttgaactcctgacctcaggtgatccgcccgcctcagccttccaaagtgct--------ggtgtgagccaccgagcccagACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5187574 111 +   6154872 gtacagatgggg--tttcaccgtgctggccaggctggtcttgaactcctgacctcaggtgatccgcccgcctcagccttccaaagtgct--------ggtgtgagccaccgagcccagaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74184899 111 + 122973662 gtagagatgggg--ttttaccgtgttggccaggctggtcttgaactcctgacctcaggtgatccgccggccccagccttccaaagtgct--------ggcatgagccactgaacccagACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29363411 111 + 172585720 gtagagatgggg--tttcaccatgttggtcaggctggtcttgaactcctgacctcagacgatccatccgcctcggcctcccaaagtgct--------ggtgtgagccaccgagcccagaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29024296 111 - 170955103 gtagagatgggg--tttcaccatgttggccaggctggtcttgaactcctgacctcagacgatccatccgcctcggcctcccaaagtgct--------ggtgtgagccaccgagcccagaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2004698 111 -   2996164 gtagagatgggg--tttcaccatgttggccaggctggtcttgaactcctgacctcagacgatccatccaccttggcctcccaaagtgct--------ggtgtgagccaccgagcccagaca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1876308 111 -   2157725 gtagagatgggg--tttcaccatgttggccaggctggtcttgaactcctgacctcagacgatccatccacctcagcctcccaaagtgct--------ggtgtgagccaccgagcccagACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28321546 111 -  71996105 gtagagatgggg--tttcaccatgatggccaggctggtcttgaactcctgacctcagacgatccatccgcctcggcctcccaaagtgct--------ggtgtgagccaccgagcccagaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2001015 111 +   2316924 gtagagatgggg--tttcaccatgttggccaggctggtcttgaactcctgacctcagacgatccatccgcctcggcctcccaaagtgct--------ggtgtgagccaccgagcccagACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1885049 113 -   3067355 gtagagacagggtttttcactatgttggccaggctggtcttgaactcctgacctcagacgatccatccgcctcggcctcccaaggtgct--------ggtgtgagccaccgagcccagACA
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      232285 119 -    373274 gtagagatggga--tttcaccatgttggtcaggctgatctcgaactcctgacctcaggtaatctgccctcctctgcctcccaaagtgctggattataggcgtgagctaccaagctcagACA
i cebCap1.NW_016108108v1   I 1592 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e canFam3.chr35             25900099 425 +  26524999 I
e saiBol1.JH378348            231994 1776 -    375362 I
e otoGar3.GL873742           1539440 540 -   2232465 I
e aotNan1.NW_018494050v1      168092   0 -    285216 C
e calJac3.chr4             171405385 1335 - 171630274 I

a score=66945.000000
s hg38.chr6_GL000254v2_alt    165551 8 +   4827813 tgatttta
s panTro5.chr6              29153038 8 + 175400573 tgatttta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29387204 8 + 173848474 TGATTTta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5187685 8 +   6154872 tgatttta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185010 8 + 122973662 TGATTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29363522 8 + 172585720 tgatttta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29024407 8 - 170955103 tgatttta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2004809 8 -   2996164 tgatttta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1876419 8 -   2157725 TGATTTta
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28321657 8 -  71996105 tgatatta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2001126 8 +   2316924 TGATTTTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1885162 8 -   3067355 TGATTTTA
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      232404 8 -    373274 CGATGTTA
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1539980 8 -   2232465 TGACTTTA
i otoGar3.GL873742         I 540 C 0
s canFam3.chr35             25900524 8 +  26524999 TGACTTTA
i canFam3.chr35            I 425 C 0
e dasNov3.JH561790             51913 2668 -    302817 I
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e saiBol1.JH378348            231994 1776 -    375362 I
e aotNan1.NW_018494050v1      168092 0 -    285216 C
e calJac3.chr4             171405385 1335 - 171630274 I

a score=956549.000000
s hg38.chr6_GL000254v2_alt    165559 110 +   4827813 tgttttaaatggctttaagtcctttttggaataaggtaaaatataattaaataTGTCAATATTTTAACTATTTACTAATAATATTTATTGCACAATAAGACTCC-------CCACAG
s panTro5.chr6              29153046 110 + 175400573 tgttttaaatggctttaagtcctttttggaataaggtaaaatataattaaataTGTCAATATTTTAACTATTTACTAATAATATTTATTGCACAATAAGACTCC-------CCACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29387212 110 + 173848474 tgttttaaatggctttaagtcctttttggaataaggtaaaatataattaaataTGTCAATATTTTAACTATTTACTAATAATATTTATTGCACAATAAGACTCC-------CCACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5187693 110 +   6154872 tgttttaaatggctttaagtcctttttggaataaggtaaaatataattaaataTGTCAATATTTTAACTATTTACTAATAATATTTATTGCACAATAAGACTCC-------CCACAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185018 107 + 122973662 TGTTTTAAATGGCTTTAAGTCCTTTTGGGAATAAGGTAAAATATAATTAAATATGTCAATATTTTAACTATTTAC---TAATATTTATTGTGCAATAAGACTCC-------CCACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29363530 110 + 172585720 tgttttaaatggctttaagtcctttttggaataaggtaaaatataattaaataTGTAAATATTTTAACTATTTACTAATAATATTTATTGCACAATAAGACTCC-------CCACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29024415 110 - 170955103 tgttttaaatggctttaagtcctttttggaataaggtaaaatataattaaataTGTAAATATTTTAACTATTTACTAATAATATTTATTGCACAATAAGACTCC-------CCACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2004817 110 -   2996164 tgttttaaatggctttaagtcctttttggaataaggtaaaatataattaaataTGTAAATATTTTAACTATTTACTAATAATATTTATTGCACAATAAGACTCC-------CCACAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1876427 110 -   2157725 tgttttaaatggctttaagtcctttttggaataaggtaaaatataattaaataTGTAAATATTTTAACTATTTACTAATAATATTTATTGCACAATAAGACTCC-------CCAGAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28321665 109 -  71996105 tgttttaaatggctttaagtcctttttggaataaggtaaaatataattaaataTGTAAATA-TTTAACTATTTACTAATAATATTTATTGCACAATAAGACTCC-------CCACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2001134 110 +   2316924 TGTTTTAAATGGCTTTAAGTCCTTTTTGGAATAAGGTAAAATATAATTAAATATGTAAATATTTTAACTATTTACTAATAATATTTATTGCACAATAAGACTCC-------CCACAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1885170 110 -   3067355 TGTTTTAAATGACTTTAAGTCCTTTTTGGAATAAGGTAAAATATAATTAAATATGTAAATATTTTAACTATTTACTAATAATATTTATTGCACAATAAGACTCC-------CCACAG
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      232412  95 -    373274 TGTTTTAAATGGTTTTAAGTCCTTTTTGGAATAAGGTAAAATATAATTAAA-----------TTTAAC----TACTAATAATATTTATTACACAATAAAACTCC-------CCACAG
i cebCap1.NW_016108108v1   C 0 I 785
s otoGar3.GL873742           1539988 106 -   2232465 CCTGTTAAATAGCTTTAAGTCCATTTTAGAACAAGATGAAGTATAATTAAACAT----ATATTTTTACTATTTACTAACAATATTTATTGTGCACAAAGGCTCC-------TTGGAG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25900532  99 +  26524999 TGTTTTAAATGGCTTGAAGTCCTTTCTGGAATAAAGTGAGGTATAATTA----TATGAATATTGTTACTATTTAC---TAACATTTACTGTGCAATAGGACTCC-------CC----
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             54581 115 -    302817 TGTTTTAAAAAGCTTGAAATCCTTTCTTGAATAAGGTAAGCTATAATTAAATATGTAAATGTTT--ATTATTTACTAACAGTATTTATTGTGTAATAGGAACTCAGGAATTCCAGAG
i dasNov3.JH561790         I 2668 C 0
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e saiBol1.JH378348            231994 1776 -    375362 I
e aotNan1.NW_018494050v1      168092   0 -    285216 C
e calJac3.chr4             171405385 1335 - 171630274 I

a score=37415.000000
s hg38.chr6_GL000254v2_alt    165669 4 +   4827813 GCCA
s panTro5.chr6              29153156 4 + 175400573 GCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29387322 4 + 173848474 GCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5187803 4 +   6154872 GCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185125 4 + 122973662 GCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29363640 4 + 172585720 GCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29024525 4 - 170955103 GCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2004927 4 -   2996164 GCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1876537 4 -   2157725 GCCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28321774 4 -  71996105 GCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2001244 4 +   2316924 GCCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1885280 4 -   3067355 GCCA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1540094 4 -   2232465 GCCA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25900631 2 +  26524999 --CA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             54696 4 -    302817 GCCA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e saiBol1.JH378348            231994 1776 -    375362 I
e aotNan1.NW_018494050v1      168092 0 -    285216 C
e cebCap1.NW_016108108v1      232507 785 -    373274 I
e calJac3.chr4             171405385 1335 - 171630274 I

a score=271863.000000
s hg38.chr6_GL000254v2_alt    165673 28 +   4827813 TTCTACATTTTTATGAAAACATCTGTAA
s panTro5.chr6              29153160 28 + 175400573 TTCTACATTTTTATGAAAACATCTGTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29387326 28 + 173848474 TTCTACATTTTTATGAAAACATCTGTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5187807 28 +   6154872 TTCTACGTTTTTATGAAAACATCTGTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185129 28 + 122973662 TTCTGCATTTTTATGAAAACATCTGTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29363644 28 + 172585720 TTCTACATTTTTATGAAAACATCTGTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29024529 28 - 170955103 TTCTACATTTTTATGAAAACATCTGTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2004931 28 -   2996164 TTCTACATTTTTATGAAAACATCTGTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1876541 28 -   2157725 TTCTACATTTTTATGAAAACATCTGTAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28321778 28 -  71996105 TTCTACATTTTTATGAAAACATCTGTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2001248 28 +   2316924 GTCTACATTTTTATGAAAACATCTGTAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1885284 28 -   3067355 TTCTACATTTTTATGAAAACATCTGTAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171406720 28 - 171630274 TTCTCCATTTTAATGGGGGCATCAGCAA
i calJac3.chr4             I 1335 C 0
s saiBol1.JH378348            233770 28 -    375362 TTCTACATTTTAATGAAAACATCAGCAA
i saiBol1.JH378348         I 1776 C 0
s otoGar3.GL873742           1540098 28 -   2232465 TTCTACATTTTTTTGAAAAAATTTCCGA
i otoGar3.GL873742         C 0 I 3
s canFam3.chr35             25900633 28 +  26524999 TCTTACATTTTTATGGAAACATCTTCCA
i canFam3.chr35            C 0 I 3
s dasNov3.JH561790             54700 22 -    302817 TTCTACATTTTTATGAGAACAT------
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      969620 1311 -   3516910 I
e aotNan1.NW_018494050v1      168092  0 -    285216 C
e cebCap1.NW_016108108v1      232507 785 -    373274 I

a score=120268.000000
s hg38.chr6_GL000254v2_alt    165701 15 +   4827813 GAGGAATTTTAAAAG
s panTro5.chr6              29153188 15 + 175400573 GAGGAATTTTAAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29387354 15 + 173848474 GAAGAATTTTAAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5187835 15 +   6154872 GAGGAATTTTAAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185157 15 + 122973662 GAGAAATTTTAAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29363672 12 + 172585720 G---AATTTTAAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29024557 12 - 170955103 G---AATTTTAAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2004959 12 -   2996164 G---AATTTTAAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1876569 12 -   2157725 G---AATTTTAAAAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28321806 12 -  71996105 G---AATTTTAAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2001276 12 +   2316924 G---AATTTTAAAAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1885312 12 -   3067355 G---AATTTTAAAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171406748 15 - 171630274 GAGGAATTCTAAAAG
i calJac3.chr4             C 0 I 1059
s saiBol1.JH378348            233798 15 -    375362 GAGGAATTTTTAAAG
i saiBol1.JH378348         C 0 C 0
s proCoq1.NW_012147953v1      970931 15 -   3516910 GAGGAATTTTGAAAG
i proCoq1.NW_012147953v1   I 1311 C 0
s otoGar3.GL873742           1540129 15 -   2232465 GGGTAATTTTGAAAG
i otoGar3.GL873742         I 3 C 0
s canFam3.chr35             25900664 15 +  26524999 GAGGGATTTTGAAAG
i canFam3.chr35            I 3 C 0
s dasNov3.JH561790             54722 15 -    302817 AAGGATTTTTGGAAG
i dasNov3.JH561790         C 0 C 0
e aotNan1.NW_018494050v1      168092  0 -    285216 C
e cebCap1.NW_016108108v1      232507 785 -    373274 I

a score=189484.000000
s hg38.chr6_GL000254v2_alt    165716 21 +   4827813 GCCTGACAAATTATTTGAAGA
s panTro5.chr6              29153203 21 + 175400573 GCCTGACAAATTATTTAAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29387369 21 + 173848474 GCCTGACAAATTATTTAAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5187850 21 +   6154872 GCCTGACAAATTATTTAAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185172 21 + 122973662 GCCTGACAAATTATTTAAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29363684 21 + 172585720 GCCTGACAAATTATTTAAAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29024569 21 - 170955103 GCCTGACAAATTATTTAAAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2004971 21 -   2996164 GCCTGACAAATTATTTAAAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1876581 21 -   2157725 GCCTGACAAATTATTTAAAGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28321818 21 -  71996105 GCCTGACAAATTATTTAAAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2001288 21 +   2316924 GCCTGACAAATTATTTAAAGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1885324 21 -   3067355 GCCTGACAAATTATTTACAGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            233813 21 -    375362 GCCTGACAAATTATTTAAAGA
i saiBol1.JH378348         C 0 C 0
s proCoq1.NW_012147953v1      970946 21 -   3516910 GCCTGACAAATTATTTAAAGA
i proCoq1.NW_012147953v1   C 0 I 61
s otoGar3.GL873742           1540144 21 -   2232465 GTCTGGCCAATTATTTAAAGA
i otoGar3.GL873742         C 0 I 1
s canFam3.chr35             25900679 16 +  26524999 ACCTGA--AAATATTAAA---
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             54737 15 -    302817 GCTGGACAAATTATT------
i dasNov3.JH561790         C 0 C 0
e aotNan1.NW_018494050v1      168092  0 -    285216 C
e cebCap1.NW_016108108v1      232507 785 -    373274 I
e calJac3.chr4             171406763 1059 - 171630274 I

a score=373105.000000
s hg38.chr6_GL000254v2_alt    165737  71 +   4827813 GGGAAGCAGAGGGACTAAAAAGGAAAGAAGCTAACAATGGTGGTCTATGAAAATGAAATAA-------------------ACAA-AACAAA-------------------------
s panTro5.chr6              29153224  71 + 175400573 GGGAAGCAGGGGGACTAAAAAGGAAAGAAGCTAACAATGGTGGTCTATGAAAATGAAACAA-------------------ACAA-AACAAA-------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29387390  71 + 173848474 GGGAAGCAGGGGGACTAAAAAGGAAAGAAGCTAACAATGGTGGTCTATGAAAATGAAACAA-------------------ACAA-AACAAA-------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5187871  71 +   6154872 GGGAAGCAGGGGGACTAAAAAGGAAAGAAGCTAACAATGGTGGTCTATGAAAATGAAATAA-------------------ACAA-AACAAA-------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185193  71 + 122973662 GGGAAGCAGGGGGACTATAAAGGAAAGAAGCTGACAATGGTGGTCTCTGAAAATGAAAAAA-------------------ACAA-AACAAA-------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29363705  66 + 172585720 GGGAAGCAGGGCGACTAAAAGAGAAAGAAGCTGACAATGGTGGTCTATGAAAATGGAA------------------------AA-GAAAAC-------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29024590  66 - 170955103 GGGAAGCAGGGCGACTAAAAGAGAAAGAAGCTGACAATGGTGGTCTATGAAAATGGAA------------------------AA-GAAAAC-------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2004992  66 -   2996164 GGGAAGCAGGGCGACTAAAAGAGAAAGAAGCTGACAATGGTGGTCTATGAAAATGGAA------------------------AA-GAAAAC-------------------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1876602  66 -   2157725 GGGAAGCAGGGCGACTAAAAGAGAAAGAAGCTGACAATGGTGGTCTATGAAAATGGAA------------------------AA-GAAAAC-------------------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28321839  67 -  71996105 GGGAAGCAGGGCGACTAAAAGAGAAAGAAGCTGACAATGGTGGTCTATGAAAATGGAA------------------------AAGGAAAAC-------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2001309  66 +   2316924 GGGAAGCAGGGCGACTAAAAGAGAAAGAAGCTGACAATGGTGGTCTATGAAAATGGAA------------------------AA-GAAAAC-------------------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1885345  61 -   3067355 GGGAAGCAGGGCGACTAAAAGAGAAAGAAGCTGACAATGGTGGTCTATGAAAATG------------------------------GAAAAC-------------------------
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            233834  70 -    375362 GGGAAGCAGGG-GACTAAAAAGGAAAGAAGCTGACAATGGTGGTCTATGACAATGAAAAAA-------------------AACA-AAAAAC-------------------------
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1540166  38 -   2232465 AGTAAGCAGAGGGAC-AAAAAGGAAAAAAGCTGATAGTG-----------------------------------------------------------------------------
i otoGar3.GL873742         I 1 C 0
s canFam3.chr35             25900695  56 +  26524999 GGGTAG--AGAGGACTCAAATGAAAACAAGCTGACAGGAGTGGTCCATACCAGTTTAA----------------------------------------------------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             54752 115 -    302817 GTAAAAAAGGGGGACTAAAAAGAAAATAAGTTGACAATGGGGACCTATACCAACTCAAAAACAATTTCATTCTCAACCTTGCAA-ATGAATTTAACTGTTTTATGTGAGGATCATA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      970967  61 -   3516910 I
e aotNan1.NW_018494050v1      168092   0 -    285216 C
e cebCap1.NW_016108108v1      232507 785 -    373274 I
e calJac3.chr4             171406763 1059 - 171630274 I

a score=108786.000000
s hg38.chr6_GL000254v2_alt    165808 14 +   4827813 A----------AAA-----------------------CAGGATTTAA
s panTro5.chr6              29153295 14 + 175400573 A----------AAA-----------------------CAGGATTTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29387461 14 + 173848474 A----------AAA-----------------------CAGGATTTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5187942 14 +   6154872 A----------AAA-----------------------CAGGATTTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185264 14 + 122973662 A----------AAA-----------------------CAGGATTTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29363771 14 + 172585720 A----------AAA-----------------------CAGGATTTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29024656 14 - 170955103 A----------AAA-----------------------CAGGATTTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2005058 14 -   2996164 A----------AAA-----------------------CAGGATTTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1876668 14 -   2157725 A----------AAA-----------------------CAGGATTTCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28321906 14 -  71996105 A----------AAA-----------------------CAGGATTTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2001375 14 +   2316924 A----------AAA-----------------------CAGGATTTCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1885406 14 -   3067355 A----------AAA-----------------------CAGGATTTCA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            233904 24 -    375362 AACCAAAAAATAAC-----------------------CAGAATTCTC
i saiBol1.JH378348         C 0 C 0
s proCoq1.NW_012147953v1      971028 14 -   3516910 A----------AAA-----------------------CAGGATTTAA
i proCoq1.NW_012147953v1   I 61 C 0
s otoGar3.GL873742           1540204 14 -   2232465 A----------AAA-----------------------CAGGATTTAA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25900751 14 +  26524999 A----------AGA-----------------------AAGAATTTAA
i canFam3.chr35            C 0 I 5
s dasNov3.JH561790             54867 37 -    302817 A----------AAATATCTGTTTCTTTCCTATCtgttcagcatttac
i dasNov3.JH561790         C 0 C 0
e aotNan1.NW_018494050v1      168092  0 -    285216 C
e cebCap1.NW_016108108v1      232507 785 -    373274 I
e calJac3.chr4             171406763 1059 - 171630274 I

a score=316710.000000
s hg38.chr6_GL000254v2_alt    165822 34 +   4827813 --------------------------------------TTTCCAACCTTGAAATGAGTCCCTTGACTGTTTT-
s panTro5.chr6              29153309 34 + 175400573 --------------------------------------TTTCCAACCTTGAAATGAGTCCCTTGACTGTTTT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29387475 34 + 173848474 --------------------------------------TTTCCAACCTTGAAATGAGTCCCTTGACTGTTTT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5187956 34 +   6154872 --------------------------------------TTTCCAACCTTGAAATGAGTCCCTTGACTGTTTT-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185278 31 + 122973662 --------------------------------------TTTCCAACCTTGAAATGAGTCCCTTGAC---TTT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29363785 34 + 172585720 --------------------------------------TTTCCAACCTTGAAATGAGTCCCTTGACCGTTTT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29024670 34 - 170955103 --------------------------------------TTTCCAACCTTGAAATGAGTCCCTTGACCGTTTT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2005072 34 -   2996164 --------------------------------------TTTCCAACCTTGAAATGAGTCCCTTGACCGTTTT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1876682 34 -   2157725 --------------------------------------TTTCCAACCTTGAAATGAGTCCCTTGACCGTTTT-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28321920 34 -  71996105 --------------------------------------TTTCCAACCTTGAAATGAGTCCCTTGACCGTTTT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2001389 34 +   2316924 --------------------------------------TTTCCAACCTTGAAATGAGTCCCTTGACCGTTTT-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1885420 34 -   3067355 --------------------------------------TTTCCAACCTTGAAATGAGTTCCTTGACCGTTTT-
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            233928 34 -    375362 --------------------------------------TTTCCAACCTTGAAATGAGTCCTTTGACTGTTTT-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      233292 34 -    373274 --------------------------------------TTTCCAACCTTGAAATGAGTCCCTTGACTGTTTT-
i cebCap1.NW_016108108v1   I 785 C 0
s proCoq1.NW_012147953v1      971042 34 -   3516910 --------------------------------------TTTTCAACCTTGAAATCAATCTCTTGACTGTTTT-
i proCoq1.NW_012147953v1   C 0 I 518
s otoGar3.GL873742           1540218 30 -   2232465 --------------------------------------TTTCCAACCTTGAAATCAATC---TGAC-GTTTT-
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25900770 25 +  26524999 --------------------------------------CTCCCAACCTTGAAATGAGTATTTT----------
i canFam3.chr35            I 5 C 0
s dasNov3.JH561790             54904 71 -    302817 tttagaataacaggggtatgttggaaagggagatgatatatccaaaatgggattga--ccataaattggtact
i dasNov3.JH561790         C 0 C 0
e aotNan1.NW_018494050v1      168092  0 -    285216 C
e calJac3.chr4             171406763 1059 - 171630274 I

a score=59003.000000
s hg38.chr6_GL000254v2_alt    165856 7 +   4827813 GTTTGAG
s panTro5.chr6              29153343 7 + 175400573 GTGTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29387509 7 + 173848474 GTGTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5187990 7 +   6154872 GTGTGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185309 7 + 122973662 TTGTGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29363819 7 + 172585720 GTGTGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29024704 7 - 170955103 GTGTGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2005106 7 -   2996164 GTGTGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1876716 7 -   2157725 GTGTGAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28321954 7 -  71996105 GTGTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2001423 7 +   2316924 GTGTGAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1885454 7 -   3067355 GTGTGAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            233962 7 -    375362 GTGTGAG
i saiBol1.JH378348         C 0 I 720
s cebCap1.NW_016108108v1      233326 7 -    373274 GTGTGAG
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1540248 7 -   2232465 ACCAGAG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25900795 7 +  26524999 ATGCAAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             54975 7 -    302817 ttttgaa
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      971076 518 -   3516910 I
e aotNan1.NW_018494050v1      168092 0 -    285216 C
e calJac3.chr4             171406763 1059 - 171630274 I

a score=1101501.000000
s hg38.chr6_GL000254v2_alt    165863 161 +   4827813 -----------------GTTC-----ATAT-------A---ACTTGGTTTTC----TGGT----atgt------------ccagg----------------------------a-ttacg-tgagagtaacagagattgg-----ggtggaa------------------------------------------------attgagatgatgctgtattc-aaa-----------tgagactgaccataaattggta---gttgaagttgggagatgatataggagggttcgctg-tgtattttcttc----------attt
s panTro5.chr6              29153350 161 + 175400573 -----------------GTTC-----ATAT-------A---ACTTGGTTTTC----TGGT----atgt------------ccagg----------------------------a-ttacg-tgagagtaacagagattgg-----ggtggaa------------------------------------------------attgagatgatgctgtattc-aaa-----------tgagactgaccataaattggta---gttgaagttgggagatgatataggagggttcgctg-tgtattttcttc----------attt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29387516 162 + 173848474 -----------------GTTC-----ATAT-------A---ACTTGGTTTTC----TGGT----atgt------------ccagg----------------------------a-ttacgttaagagtaacagagattgg-----ggtggaa------------------------------------------------attgagatgatgctgtattc-aaa-----------tgagactgaccataaattggta---gttgaagttgggagatgatataggagggttcactg-tgtattttcttc----------attt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5187997 161 +   6154872 -----------------GTTC-----ATAT-------A---ACTTGGTTTTC----TGGT----atgt------------ccagg----------------------------a-ttacg-tgagagtaacagagattgg-----ggtggaa------------------------------------------------attgagatgatgctgtattc-aaa-----------tgagactgaccatagattggta---gttgaagttgggagatgatataggagggttcgctg-tgtattttcttc----------attt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185316 164 + 122973662 -----------------GTTC-----ATAT-------A---ATTTGATTTTC----TGGT----atgt------------ccagg----------------------------a-ttacg-tgagagtaacagggattgg-----ggtggaa------------------------------------------------attgagatgacgctgtattc-aaa-----------tgagactgaccataaattggtagttgttgaagttgggagatgatataggagggttcgctg-tgtattttcttc----------attt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29363826 163 + 172585720 -----------------GTT------ATAT-------A---ATTTGATTTTC----CGAT----atgt------------ccagg----------------------------a-ttacg-tgagattaacagggattgg-----ggtggaa------------------------------------------------attgagatgaggctgtattc-aaa-----------tgagattgaccataaattggtagttgttgaagttgggagatgatataggagggttcgctg-tgtattttcttc----------attt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29024711 163 - 170955103 -----------------GTT------ATAT-------A---ATTTGATTTTC----CGAT----atgt------------ccagg----------------------------a-ttacg-tgagattaacagggattgg-----ggtggaa------------------------------------------------attgagatgaggctgtattc-aaa-----------tgagattgaccataaattggtagttgttgaagttgggagatgatataggagggttcgctg-tgtattttcttc----------attt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2005113 163 -   2996164 -----------------GTT------ATAT-------A---ATTTGATTTTC----CCAT----atgt------------ccagg----------------------------a-ttacg-tgagattaacagggattgg-----ggtggaa------------------------------------------------attgagatgaggctgtattc-aaa-----------tgagattgaccataaattggtagttgttgaagttgggagatgatataggagggttcgctg-tgtattttcttc----------attt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1876723 163 -   2157725 -----------------GTT------ATAT-------A---ATTTGATTTTC----CGAT----atgt------------ccagg----------------------------a-ttacg-tgagattaacagggattgg-----ggtggaa------------------------------------------------attgagatgaggctgtattc-aaa-----------tgagattgaccataaattggtagttgttgaagttgggagatgatataggagggttcgctg-tgtattttcttc----------attt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28321961 163 -  71996105 -----------------GTT------ATAT-------A---ATTTGATTTTC----TGAT----atgt------------ccagg----------------------------a-ttacg-tgagattaacagggattga-----ggtggaa------------------------------------------------attgagatgaggctgtattc-aaa-----------tgagattgaccataaattggtagttgttgaagttgggagatgatataggagggttcgctg-tgtattttcttc----------attt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2001430 163 +   2316924 -----------------GTT------ATAT-------A---ATTTGATTTTC----CGAT----atgt------------ccagg----------------------------a-ttacg-tgagattaacagggattgg-----ggtgaaa------------------------------------------------attgagatgaggctgtattc-aaa-----------tgagattgaccataaattggtagttgttgaagttgggagatgatataggagggttcgctg-tgtattttcttc----------attt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1885461 163 -   3067355 -----------------GTT------ATAT-------A---ATTTGATTTTC----TGAT----atgt------------ccagg----------------------------a-ttatg-tgagattaacagggattgg-----ggtggaa------------------------------------------------attgagatgaggctgtattc-aaa-----------tgagattgaccataaattggtagttgttgaagttgggagatgatataggagggttcgctg-tgtattttcttc----------attt
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      233333 164 -    373274 -----------------GCTT-----ATCC-------A---ACTAGATTTCC----TGTT----atgt------------ccagg----------------------------a-ttact-tgagattaacaggtactgg-----ggtggaa------------------------------------------------attgaaatgaggctatattt-aaa-----------tgagattgactgtaaattggtagttgttgaagctgggagatgatacaggagggtttgctg-tatattttcttc----------cttt
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1540255 151 -   2232465 -----------------GTTTCATA-AAAT-------C---ATCTAATTTTTGtgacatc----atgt------------ccagg----------------------------atttact-ttagactaa----------------------------------------------------------------------------atgagagtgcatttgaaa-----------tcagattgaccacaaatttccagctgttgaagttgggacacaatattgg-gagttcattgttatattttcttt----------actt
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25900802 166 +  26524999 -----------------GCTC-----ATAA-------ACACATCTGATTCTC----TAATtatcatgt------------ccagg----------------------------atttact-ttggagtaacagcaat--------agtggaa------------------------------------------------attcagatgaggctatattggaaa-----------tgaagttggcaataaattgatt---gttgaagccaggagatgctatagg-gagttcactc-aatatttccctc----------attt
i canFam3.chr35            C 0 I 4
s dasNov3.JH561790             54982 303 -    302817 gtcaggagctaggatgggttccctgtatattctctcca---attttgtatTC----TTAA----AGGTTTCTTTAgggaaccagatgtggttcaagtgatagagcttctgccta-ccaca-tgggaggacccgggttcgattcctggtgaaaaaaagaaagggtgcccgcccggtgagccagtgcccatgacagtcatgcagcaagataatgacacatta-aaagagagacaaagggagagtcaaggtgaagtg-ca---gcagaaaccaggaactgaggtggcacaattgacag-ggaacctccctccacatcaggggtct
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      971076 518 -   3516910 I
e saiBol1.JH378348            233969 720 -    375362 I
e aotNan1.NW_018494050v1      168092   0 -    285216 C
e calJac3.chr4             171406763 1059 - 171630274 I

a score=436586.000000
s hg38.chr6_GL000254v2_alt    166024  53 +   4827813 ----------------------------------------------------------------------------------------ttgtatatggttac---------aggtttccatagtgaagagttCATTCAATACAGAAAAAA
s panTro5.chr6              29153511  53 + 175400573 ----------------------------------------------------------------------------------------ttgtatatggttac---------aggtttccatagtgaagagttCATTCAATACAGAAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29387678  53 + 173848474 ----------------------------------------------------------------------------------------ttgtatatggttac---------aggtttccatagtgaagagttCATTCAATACAAGAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5188158  53 +   6154872 ----------------------------------------------------------------------------------------ttgtatatggttaa---------aggtttccatagtgaagagttCATTCAATACAGAAAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185480  53 + 122973662 ----------------------------------------------------------------------------------------ttgtgtatggttaa---------aggtttccatactgaagagGTCATCCAATACagaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29363989  53 + 172585720 ----------------------------------------------------------------------------------------ttatgtatggttaa---------aggtttccatagtgaagagttCATTCAATACAGAAAAAA
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              29024874  53 - 170955103 ----------------------------------------------------------------------------------------ttatgtatggttaa---------aggtttccatagtgaagagttCATTCAATACAGAAAAAA
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     2005276  53 -   2996164 ----------------------------------------------------------------------------------------ttatgtatggttaa---------aggtttccatagtgaagagttCATTCAATACAGAAAAAA
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012001495v1     1876886  53 -   2157725 ----------------------------------------------------------------------------------------ttatgtatggttaa---------aggtttccatagtgaagagttCATTCAATACAGAAAAAA
i cerAty1.NW_012001495v1   C 0 I 1
s chlSab2.chr17             28322124  53 -  71996105 ----------------------------------------------------------------------------------------ttatgtatggttaa---------aggtttccatagtgaagagttCATTCAATACAGAAAAAA
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012104165v1     2001593  53 +   2316924 ----------------------------------------------------------------------------------------ttatgtatggttaa---------aggtttccataatgaagagttCATTCAATACAGAAAAAA
i manLeu1.NW_012104165v1   C 0 I 1
s colAng1.NW_012115566v1     1885624  53 -   3067355 ----------------------------------------------------------------------------------------ttgtgtatggttaa---------aggtttccatagtgaagagttCATTCAATACAGAAAAAA
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chr4             171407822  53 - 171630274 ----------------------------------------------------------------------------------------TCGTGTATGCTTAA---------AGATTTACATAGTGAAGAGTTCATTCAACACAGAAAAAA
i calJac3.chr4             I 1059 C 0
s cebCap1.NW_016108108v1      233497  53 -    373274 ----------------------------------------------------------------------------------------tggtgtatgcttaa---------agatttccatagtgaagagttCATTCAACACAGAAAAAA
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1540406  58 -   2232465 ----------------------------------------------------------------------------------------ttgtgtatgcttaaTACTTACTTAGGTTTCTATGGTGAAGGG----TGCAATATAGAAAAAA
i otoGar3.GL873742         C 0 I 196
s canFam3.chr35             25900972  49 +  26524999 ----------------------------------------------------------------------------------------gtgtgtgtacttca---------aggtctccattgtgaaga----attCAGTGCAGCTGGAA
i canFam3.chr35            I 4 C 0
s dasNov3.JH561790             55285 139 -    302817 ctggaatcaAATACTAGAGGAGAGAAAATGAGAAGACTGCAAAAACAGCAGGGCAGGAGGAGGAGAAGGGGGGAAAATAAATAAATAAATCTAAAAAGAAAA---------AGGTTTCTATAGTAAAGTGTTCA--CAACAGGGAAACAA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      971076 518 -   3516910 I
e saiBol1.JH378348            233969 720 -    375362 I
e aotNan1.NW_018494050v1      168092   0 -    285216 C

a score=297618.000000
s hg38.chr6_GL000254v2_alt    166077 33 +   4827813 AAAAA--ATCACCA--------A--GTCTCATCAAAAG-CATCTAT
s panTro5.chr6              29153564 32 + 175400573 AAAAA---TCACCA--------A--GTCTCATCAAAAG-CATCTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29387731 33 + 173848474 AAAAA--ATCACCA--------A--GTCTCATCAAAAG-CATCTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5188211 35 +   6154872 AAAAAAAATCACCA--------A--GTCTCATCAAAAG-CATCTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185533 31 + 122973662 aaa----atcacca--------a--atctcatcaaaag-catctat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29364043 33 + 172585720 AAAAA--ATCACCA--------A--GTCTCATCAAAAG-CATCTAT
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              29024928 33 - 170955103 AAAAA--ATCACCA--------A--GTCTCATCAAAAG-CATCTAT
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     2005330 33 -   2996164 AAAAA--ATCACCA--------A--GTCTCATCAAAAG-CATCTAT
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012001495v1     1876940 33 -   2157725 AAAAA--ATCACCA--------A--GTCTCATCAAAAG-CATCTAT
i cerAty1.NW_012001495v1   I 1 C 0
s chlSab2.chr17             28322178 33 -  71996105 AAAAA--ATCACCA--------A--GTCTCATCAAAAG-CATCTAT
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012104165v1     2001647 33 +   2316924 AAAAA--ATCACCA--------A--GTCTCATCAAAAG-CATCTAT
i manLeu1.NW_012104165v1   I 1 C 0
s colAng1.NW_012115566v1     1885678 33 -   3067355 AAAAA--ATCACCA--------A--GTCTCATCAAAAG-CATCTAT
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chr4             171407875 33 - 171630274 AGAAA--ATCACCA--------A--GTCTCATTGAAAG-CGCCTAT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      233550 33 -    373274 AGAAA--ATCACCA--------A--GTCTCATTGAAAG-CATCTAT
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1540660 35 -   2232465 AAAAA--ATCACCC--------AGGGTCTCATCAAAAG-CATCTAT
i otoGar3.GL873742         I 196 C 0
s canFam3.chr35             25901021 30 +  26524999 --AAA--TCCTCCA-------TA--ATCTCATCAAAAG-CATCT--
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             55424 42 -    302817 AACAA--AACCCCAAAACCCATA--GCCTCATCAAAAACCAGGTAC
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      971076 518 -   3516910 I
e saiBol1.JH378348            233969 720 -    375362 I
e aotNan1.NW_018494050v1      168092  0 -    285216 C

a score=909786.000000
s hg38.chr6_GL000254v2_alt    166110  99 +   4827813 GCTAATATTTTGGCATATTTCTTCCCAGTTTTTAAAGAAAT--A---TGTAGGTTCAAA---------TCTTT-------------C------TAA-------------------------------------------------------TT-CT----------CAC-TTT--TTTCTATTA--TTCTTTTTGTGCATCAG
s panTro5.chr6              29153596 109 + 175400573 GCTAATATTTTGGCATATTTCTTCCCAGTTTTTAAAGAAAT--A---TGTAGGTTCAAA---------TCTTT-------------C------TAA--------------------------------------------ATTAGTAT---TT-CT----------CAC-TTT--TTTCTATTACATTCTTTTTGTGCATCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29387764 109 + 173848474 GCTAATATTTTGGCATATTTCTTCCCAGTTTTTAAAGAAAT--A---TGTAGGTTCAAA---------TCTTT-------------C------TAA--------------------------------------------ATTAGTAT---TT-CT----------CAC-TTT--TTTCTATTACATTCTTTTTGTGCATCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5188246 108 +   6154872 GCTAGTATTTTGGCATATTTCTTCCCAGTTTTTAAAG-AAT--A---TGTAGGTTCAAA---------TCTTT-------------C------TAA--------------------------------------------ATTAGTAT---TT-CT----------CAC-TTT--TTTCTATTACATTCTTTTTGTGCATCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185564 109 + 122973662 gctaatattttggcatatttcttcccagtttttAAAGAAAT--A---TGTAGGTTCAAA---------TATTT-------------C------TAA--------------------------------------------ATTAGTAT---TT-CT----------CAC-TTT--TTTCTATTACATTCTTTTTGTGCATCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29364076 114 + 172585720 GCTAATATTTTGGCATATTTCTTCCCAGTTTTTAAAGAAAT--A---TGTAGGTTGAAA---------TCTTT-------------C------TAATCT---------------------------------------AAATTAGTAT---TT-CT----------CAC-TTT--TTTCTATTATATTCTTTTTGAGCATCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29024961 114 - 170955103 GCTAATATTTTGGCATATTTCTTCCCAGTTTTTAAAGAAAT--A---TGTAGGTTGAAA---------TCTTT-------------C------TAATCT---------------------------------------AAATTAGTAT---TT-CT----------CAC-TTT--TTTCTATTATATTCTTTTTGAGCATCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2005363 114 -   2996164 GCTAATATTTTGGCATATTTCTTCCCCGTTTTTAAAGAAAT--A---TGTAGGTTGAAA---------TCTTT-------------C------TAATCT---------------------------------------AAATTAGTAT---TT-CT----------CAC-TTT--TTTCTATTATATTCTTTTTGAGCATCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1876973 114 -   2157725 GCTAATATTTTGGCATATTTCTTCCCAGTTTTTAAAGAAAT--A---TGTAGGTTGAAA---------TCTTT-------------C------TAATCT---------------------------------------AAATTAATAT---TT-CT----------CAC-TTT--TTTCTATTATATTCTTTTTGAGCATCAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28322211 114 -  71996105 GCTAATATTTTGGCATATTTCTCCCCAGTTTTTAAAGAAAT--A---TGTAGGTTGAAA---------TCTTT-------------C------TAATCT---------------------------------------AAATTAGTAT---TT-CT----------CGC-TTT--TTTCTATTATATTCTTTTTGAGCATCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2001680 114 +   2316924 GCTAATATTTTGGCATATTTCTTCCCAGTTTTTAAAGAAAT--A---TGTAGGTTGAAA---------TCTTT-------------C------TAATCT---------------------------------------AAATTAGTAT---TT-CT----------CAC-TTT--TTTCTATTATATTCTTTTTGAGCATCAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1885711 114 -   3067355 GCTAATATTTTGGCATATTTCTTCCCAGTTTTTAAAGAAAT--A---TGTAGGTTGAAA---------TCTTT-------------C------TAATCT---------------------------------------AAATTAGTAT---TT-CT----------CAC-TTT--TTTCTGTTATATTCTTTTTCAGCATCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171407908 109 - 171630274 GTTAATATTTTGGCATATTTCTTCCCAGTTTTTAAGGAAAT--A---TGTAAGTTGAAA---------TCTTT-------------C------TAA--------------------------------------------ATTAGTAT---TT-CT----------CAC-TTT--TTTCTCTTACATTCCTTTTGTGCCTCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            234689 111 -    375362 gctaatttttttg--tatttctTCCCAGTTTTTAAGGAAAT--A---TGTAAGTTGAAA---------TCGTT-------------CTAATCTTAA--------------------------------------------ATTAGTAT---TT-CT------------C-TTT--TTTCTCTTACATTCTTTTTGCCCCTCAG
i saiBol1.JH378348         I 720 C 0
s cebCap1.NW_016108108v1      233583 109 -    373274 GCTAATATTTTGGCATATTTCTTCCCAGCTTTTAAGGAAAT--A---TGTAAGTTGAAA---------TCTTT-------------C------TAA--------------------------------------------ATTAGTAT---TT-CT----------CAC-TTT--TTTCTCTTACGTTCTTTTTGTGCCTCAG
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1540695 119 -   2232465 GATAATATTTT------------TTTAGTCATTTAAAAACTAAA---TGTAGGTTGAAA-ATGTGAAGTTTTT-------------C------TACACTA----------------------------------AAGGAAACTAATAT---CTGCT----------CGCTTTT--TTTCTGTTACATTCTTCTTGTAGAATGT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25901051 122 +  26524999 GTTAATTCTTTGGCATATTTCTTTCCAGTTAAAAAAAAAAA--G---TGTAAGTTGAGA---------AATGT-------------G------AAATCTC---------------------------------TACATACACTAAAATAAGTT-AT----------CAC-CTCTATTTCTATTCTATTC---TTGTGTATCAC
i canFam3.chr35            C 0 I 1
s dasNov3.JH561790             55466 176 -    302817 GGTAATATTCTGGCATATTTG----CAGTTTTTAAAAAAAT--AATGGGTAGACTGAAAAAAGTGAACTCTTTACACTAAAGGaaat------taattttatgtattatattgaaaatatattaaGTATATGACATATACTTTAGTAT---AT-ATGAAGTATAAATAT-TTT--TTTC-------TTATTCTTGTGTATCC-
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      971076 518 -   3516910 I
e aotNan1.NW_018494050v1      168092   0 -    285216 C

a score=1447489.000000
s hg38.chr6_GL000254v2_alt    166209 128 +   4827813 AACCCTAAAATGGG-TTTGGCAATCACATCCCA------TAC--AAATCCAAGTTCTTCACATCCTCTAAACAAAG-AATCTGG---T--AGAG----ATGTGTGTATCTCTAAAGGTTACCTTCAAATGT----CCTGCTTACATTTCAA
s panTro5.chr6              29153705 128 + 175400573 AACCCTAAAATGGG-TTTGGCAATCACATCCCA------TAC--AAATCCAAGTTCTTCACATCCTCTAAACAAAG-AATCTGG---T--AGAG----ATGTGTGTATCTCTAAAGGTTACCTTCAAATGT----CCTGCTTACATTTCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29387873 128 + 173848474 AACCCTAAAATGGG-TTTGGCGATCACATCCCA------TAC--AAATCCAAGTTCTTCACATCCTCTAAACAAAG-AATCTGG---T--AGAG----ATGTGTGTATCTGTAAAGGTTACCTTCAAATGT----CCTGCTTACATTTCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5188354 129 +   6154872 AACCCTAAAATGGGTTTTGGCAATCACATCCCA------TAC--AAATCCAAGTTCTTCACATCCTCTAAACAAAG-AATCTGG---T--AGAG----ATGTGTGTATCTCTAAAGGTTACCTTCAAATGT----CCTGCTTACATTTCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185673 129 + 122973662 AACCCTAAACTGGG-TTTGGCAATCACATCCCA------TAC--AAATCCAAGTTCTTCACATCCTCTGAACGAAGAAATCTGG---T--AGAG----ATGTGTGTATCTGTAAAGGTTACCTTCAAATGT----CCTGCTTACATTTCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29364190 128 + 172585720 AACCCTAAACTGGG-TTTGGCAATCACATCCCA------TAC--AAATCCAAGTTCTTCACATCCTCTGAACGAAG-AATCTGG---T--AGAG----ACGTGTGTATCTGTAAAGGTTACCTTCAAATGT----CCTGCTTACATTTCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29025075 128 - 170955103 AACCCTAAACTGGG-TTTGGCAATCACATCCCA------TAC--AAATCCAAGTTCTTCACATCCTCTGAACGAAG-AATCTGG---T--AGAG----ACGTGTGTATCTGTAAAGGTTACCTTCAAATGT----CCTGCTTACATTTCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2005477 128 -   2996164 AACCCTAAACTGGG-TTTGGCAATCACATCCCA------TAC--AAATCCAAGTTCTTCACATCCTCTGAACGAAG-AATCTGG---T--AGAG----ACGTGTGTATCTGTAAAGGTTACCTTCAAATGT----CCTGCTTACATTTCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1877087 128 -   2157725 AACCCCAAACTGGG-TTTGGCAATCACATCCCG------TAC--AAATCCAAGTTCTTCACATCCTCTGAACGAAG-AATCTGG---T--AGAG----ACGTGTGTATCTGTAAAGGTTACCTTCAAATGT----CCTGCTTACATTTCAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28322325 128 -  71996105 AACCCTAAACTGGG-TTTGGCAATCACATCCCA------TTC--AAATCCAAGTTCTTCACATCCTCTGAACGAAG-AATCTGG---T--AGAG----ACGTGTGTATCTGTAAAGGTTACCTTCAAATGT----CCTGCTTACATTTCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2001794 128 +   2316924 AACCCTAAACTGGG-TTTGGCAATCACATCCCA------TAA--AAATCCAAGTTCTTCACATCCTCTGAACGAAG-AATCTGG---T--AGAG----ACGTGTGTATCTGTAAAGGTTACCTTCAAATGT----CCTGCTTACATTTCAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1885825 127 -   3067355 AACCCTAAACTGGG-TTTGGCAATCACATCCCA------TAC--AAAT-CAAGTTCTTCACACCCTCTGAACGAAG-AATCTGG---T--AGAG----ACGTGTGTATCTGTAAACGTTACCTTCAAATGT----CCTGCTTACATTTTAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171408017 128 - 171630274 AACCCTGACTTGGG-TTTGGCAATCACGTCCCA------TAC--AAATCCAAGTCCTGCACATCCTCTGAACAAAG-AATCTGG---C--AGAG----ATGCATTTATCTGAAAAGGATACCTTCAAATGT----CCTGCTTACATTTCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            234800 128 -    375362 AACACTGACTTGGG-TTTGGCAATCACGTCCCA------TAC--AAATCCAAGTCCTTTACATGCTCTGAACAAAG-AATCTGG---C--AGAG----ATGTGTGTATCTGAAAAGGATACCTTCGAATGT----CCTGCTTACATTTCAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      233692 128 -    373274 AACCCTGACTTGGG-TTTGGCAATCACGTCCTA------TAC--AAATCCAAGTCGTTTACATCCTCTGAACAAAG-AATCTGG---C--AGAG----ATGTGTGTATCTCAAAAGGATACCTTCAAATGT----CCTGCTTACATTTCAA
i cebCap1.NW_016108108v1   C 0 C 0
s proCoq1.NW_012147953v1      971594 130 -   3516910 AACCCTGAAGTGGA-TTTCGAAATCACATCGCA------TAC--AAATCCAAATTCTGTATGTGCTCTGAATGAAG-AATCTAG---TAAAAAG----ACGTGTGTATCTGAAAAGGTTACGTTCAAAGGC----CTTGCTTACATTTCAA
i proCoq1.NW_012147953v1   I 518 I 445
s otoGar3.GL873742           1540814 111 -   2232465 AACA--GAATAGGA-TTTGGCAATCACACCCCA------TAC--AAATCCCAATTCTGTATGTGCTGTGAATGAAG-AATCTGG---T----------ACATGTGTGCCAGA-----------TCAAACAT----CTTGGTTACATATCAA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25901174 126 +  26524999 AACCCCAAACTGGA-CGTGGCAATTGTATGCAA------CACTATAATCCAGA-----CAAATCTTCTGAATGAGG-AATCAGGGGAT--AGAG----AGGAATGTACCTC--AAAGTTACCTTCAAATGC----CCTGGTTACACTTCAA
i canFam3.chr35            I 1 C 0
s dasNov3.JH561790             55642 140 -    302817 AACCCTAAACTGGG-TTTGGCAGTCACATGCCACTGTATTAT--CACAGCAAATCCTGTATTTGTTCTGAAT-AGG-GATGTGG---A--AAAGAGGCATGAATGTACCTGAAAAGGCTACCTTCAAATGCCATACCTGTTAACATCCTA-
i dasNov3.JH561790         C 0 C 0
e aotNan1.NW_018494050v1      168092   0 -    285216 C

a score=408553.000000
s hg38.chr6_GL000254v2_alt    166337 45 +   4827813 ACTTCAA-ATGCAAAATTAATTCAACAGATAAGCCAGATCTAAGA-A
s panTro5.chr6              29153833 45 + 175400573 ACTTCAA-ATGCAAAATTAATTCAACAGATAAGCCAGATCTAAGA-A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29388001 45 + 173848474 ACTTCAA-ATGCAAAATTAATTCAACAGATAAGCCAGATCTAAGA-A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5188483 45 +   6154872 ACTTCAA-ATGCAAAATTAATTCAACAGATAAGCCAGATCTAAGA-A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185802 45 + 122973662 ACTTCAA-ATGCAAAATTAATTCAACAGATAAGCCAGATGTAAGA-A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29364318 45 + 172585720 ACTTCAA-ATGCAAAATTAATTCAACAGATAAGCCAGATCTAAGA-A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29025203 45 - 170955103 ACTTCAA-ATGCAAAATTAATTCAACAGATAAGCCAGATCTAAGA-A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2005605 45 -   2996164 ACTTCAA-ATGCAAAATTAATTCAACAGATAAGCCAGATCTAAGA-A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1877215 45 -   2157725 ACTTCAA-ATGCAAAATTAATTCAACAGATAAGCCAGATCTAAGA-A
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28322453 45 -  71996105 ACTTCAA-ATGCAAAATTAATTCAACAGGTAAGCCAGATCTAAGA-A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2001922 45 +   2316924 ACTTCAA-ATGCAAAATTAATTCAACAGATAAGCCAGATCTAAGA-A
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1885952 45 -   3067355 ACTTCAA-ATGCAAAATTAATTCAACAGATAAGCCAGATCTAAGA-A
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171408145 45 - 171630274 ACATCAAAATGCAAAATTAATTCAGCAGATAAGCCAGTCCTAAAA--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            234928 45 -    375362 ATGTCAACATGCAAAATTAATTCAGCAGATAAGCCAGTCCTAAAA--
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      233820 46 -    373274 ACGTCAAAATGCAAAATTAATTCAGCAGATAAGCCAGTCCTAAAAA-
i cebCap1.NW_016108108v1   C 0 I 15
s otoGar3.GL873742           1540925 41 -   2232465 ACTTCAG-ATGCAAAAGTA----AACAAATAAATCAGACTTGAGA-A
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25901300 45 +  26524999 ACTCCAA-ATGTAAAATTAAGCCCACAAATAAGCCACATCTGAGA-T
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             55782 13 -    302817 ----------GCAAAGCTACTTC------------------------
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      971724 445 -   3516910 I
e aotNan1.NW_018494050v1      168092  0 -    285216 C

a score=42713.000000
s hg38.chr6_GL000254v2_alt    166382 7 +   4827813 ATGTATC
s panTro5.chr6              29153878 7 + 175400573 ATGTATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29388046 7 + 173848474 ATGTACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5188528 7 +   6154872 ATGTATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185847 7 + 122973662 ATGTATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29364363 7 + 172585720 ATCTATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29025248 7 - 170955103 ATCTATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2005650 7 -   2996164 ATCTATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1877260 7 -   2157725 ATCTATC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28322498 7 -  71996105 ATCTATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2001967 7 +   2316924 ATCTATC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1885997 7 -   3067355 ATCTATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171408190 7 - 171630274 ACAGATC
i calJac3.chr4             C 0 I 9
s saiBol1.JH378348            234973 7 -    375362 ACAGATC
i saiBol1.JH378348         C 0 I 10
s otoGar3.GL873742           1540966 7 -   2232465 ATTTACA
i otoGar3.GL873742         C 0 I 2
s canFam3.chr35             25901345 7 +  26524999 ATTTATG
i canFam3.chr35            C 0 I 1
e dasNov3.JH561790             55795 0 -    302817 C
e proCoq1.NW_012147953v1      971724 445 -   3516910 I
e aotNan1.NW_018494050v1      168092 0 -    285216 C
e cebCap1.NW_016108108v1      233866 15 -    373274 I

a score=11157.000000
s hg38.chr6_GL000254v2_alt    166389 9 +   4827813 TTTTCTCCA
s panTro5.chr6              29153885 9 + 175400573 TTTTCTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29388053 9 + 173848474 TTTTCTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5188535 9 +   6154872 TTTTCTCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185854 9 + 122973662 TTTTCTCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29364370 4 + 172585720 TT-----CC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29025255 4 - 170955103 TT-----CC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2005657 4 -   2996164 TT-----CC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1877267 4 -   2157725 TT-----CC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28322505 4 -  71996105 TT-----CA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2001974 4 +   2316924 TT-----CC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1886004 4 -   3067355 TT-----CA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171408206 9 - 171630274 TTTTCTCCA
i calJac3.chr4             I 9 C 0
s saiBol1.JH378348            234990 9 -    375362 TTTTCTCCA
i saiBol1.JH378348         I 10 C 0
s cebCap1.NW_016108108v1      233881 9 -    373274 TTTTCTCCA
i cebCap1.NW_016108108v1   I 15 C 0
s otoGar3.GL873742           1540975 9 -   2232465 TTCACTCCA
i otoGar3.GL873742         I 2 C 0
s canFam3.chr35             25901353 9 +  26524999 TTTCTTTCC
i canFam3.chr35            I 1 C 0
s dasNov3.JH561790             55795 5 -    302817 ----CTCTA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      971724 445 -   3516910 I
e aotNan1.NW_018494050v1      168092 0 -    285216 C

a score=870956.000000
s hg38.chr6_GL000254v2_alt    166398 93 +   4827813 AC-GGGAAAAAGGAAATGTAA-TGGGGCAATACTGTCAAATGGAAGTACTATttggcctggcatggtggcccatgcctgtaatcccaa-cactttg
s panTro5.chr6              29153894 94 + 175400573 ACAGGGAAAAAGGAAATGTAA-TGGGGCAATATTGTCAAATGGAAGTACTGTttggcctggcatggtggcccatgcctgtaatcccaa-cactttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29388062 94 + 173848474 ACAGGGAAAAAGGAAATGTAA-TGGGGCAATATTGTCAAATGGAAGTACTGTttggcctggcatggtggcccatgcctgtaatcccaa-cactttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5188544 94 +   6154872 ACAGGGAAAAAGGAAATGTAA-TGGGGCAATACTGTCAAATGGAAGTACTGTttggcctggcatggtggcccatgcctgtaatcccaa-cactttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185863 94 + 122973662 ACAGGGAAAAAGGAAATGTAA-TGGGGCAATACTGTCAAATGGAAGTACTGTTTGgcctggcatggtggcccatgcctgtaatcccaa-cactttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29364374 94 + 172585720 ACAGGGAAAAAGGAAATGTAA-TGGGGCAATACTGTCAAATGGAAGTACTGTttggcctggcatggtggcccatgcctgtaatcccaa-cgccctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29025259 94 - 170955103 ACAGGGAAAAAGGAAATGTAA-TGGGGCAATACTGTCAAATGGAAGTACTGTttggcctggcatggtggcccatgcctgtaatcccaa-cgccctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2005661 94 -   2996164 ACAGGGAAAAAGGAAATGTAA-TGGGGCAATACTGTCAAATGGAAGTACTGTttggcctggcatggtggcccatgcctgtaatcccaa-caccctg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1877271 94 -   2157725 ACAGGGAAAAAGGAAATGTAA-TGGGGCAATACTGTCAAATGGAAGTACTGTttggcctggcatggtggcccatgcctgtaatcccaa-cgctttg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28322509 94 -  71996105 ACAGGGAAAAAGGAAATGTAA-TGGGGCAATACTGTCAAATGGAAGTACTGTttggcctggcatggtggcccatgcctgtaatcccaa-cgctttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2001978 94 +   2316924 ACAGGGAAAAAGGAAATGTAA-TGGGGCAATACTGTCAAATGGAAGTACTGTttggcctggcatggtggcccatgcctgtaatcccaa-cgctttg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1886008 94 -   3067355 ACAGGGAAAAAGGAAATGTTA-TGGGGCAATACTATCAAATGGAAGTACTGTttggcctggcatggtggcccatgcctgtaatcccaa-cgctttg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171408215 93 - 171630274 ACAGGGAAAGAGGAAACATAA-T-GGGCAATACTGCCAAGTCCAAGTCCTGTTTGgcctggcatggtggcccatgcctgcaatcccaa-aacgtgg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            234999 93 -    375362 ACAGGGAAAGAGGAAATATAA-C-AGGCAATACTGCCAAATGCAAGTCCTGTTTTgccgggcatggtggcccatgcctgtaaccccaa-cactttg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      233890 93 -    373274 ACAGGGAAAGAGGAAATGTAA-C-GGGCAATACTGCCAAATGCAAGTCCTGTttggcctggcatggcagcctacgcctgtaatcccaa-cactttg
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1540984 64 -   2232465 ACAAGGAAAAAGGAAATGTAACTGGAGCAATGTTCTCAAATACAA-------------------------------CTGTTATTCACA-CATTTTG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25901362 79 +  26524999 AGTTGGGACAAGGAAATGTAACTGAGCCACTGCGGTCATATCCAAGTACTGT-----------------CCAGAGTTTGAAATCCAGACCACTTTG
i canFam3.chr35            C 0 I 32
e dasNov3.JH561790             55800  0 -    302817 C
e proCoq1.NW_012147953v1      971724 445 -   3516910 I
e aotNan1.NW_018494050v1      168092  0 -    285216 C

a score=456788.000000
s hg38.chr6_GL000254v2_alt    166491 53 +   4827813 ggaggttgaggaggaagaatcccttgagcccaggagttcgagcctgcagtg-ag
s panTro5.chr6              29153988 53 + 175400573 ggaggttgaggaggaagaatcccttgagcccaggagttcgagcctgcagtg-ag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29388156 53 + 173848474 ggaggttgaggaggaagaatcccttgagcccaggagttcgagcctgcagtg-ag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5188638 53 +   6154872 ggaggttgaggaggaagaatcccttgagcccaggagttcgagcctgcagtg-ag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74185957 53 + 122973662 ggaggttgaggagggagaatcccttgagcccaggagctccaggctgcagtg-aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29364468 53 + 172585720 ggaggttgaggagggagaatcccttgagcccaggagttcaaggctgcagtg-ag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29025353 53 - 170955103 ggaggttgaggagggagaatcccttgagcccaggagttcaaggctgcagtg-ag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2005755 53 -   2996164 ggaggttgaggagggagaatcccttgagcccaggagttcaaggctgcagtg-ag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1877365 53 -   2157725 ggaggttgaggagggagaatcccttgagcccaggagttcaaggctgcagtg-ag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28322603 53 -  71996105 ggaggttgaggagggagaatcccttgagccccggagttcaaggctgcagtg-ag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2002072 53 +   2316924 ggaggttgaggagggagaatcccttgagcccaggagttcaaggctgcagtg-ag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1886102 53 -   3067355 ggaggttgaggagggagaatcccttgagcccaggagttcaaggctgtagtg-ag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171408308 53 - 171630274 ggaggctgaggagggagaatcccttgagcccaggagtcttaggctgcagtg-ag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            235092 54 -    375362 ggaggctgaggagggagaatcccttgagcccaggagtcttaggctgcagtgcag
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      233983 53 -    373274 ggaggctgaggagagagaatcccttgagcccaggaatcttaggctgcagtg-ag
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1541048 18 -   2232465 ------------------ATACCT----------------AAGCTACTTTA-A-
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             55800  0 -    302817 C
e proCoq1.NW_012147953v1      971724 445 -   3516910 I
e canFam3.chr35             25901441 32 +  26524999 I
e aotNan1.NW_018494050v1      168092  0 -    285216 C

a score=416672.000000
s hg38.chr6_GL000254v2_alt    166544 53 +   4827813 taataatcttgccactgcattccagccttggtgacaaagtgagaccctttctc
s panTro5.chr6              29154041 53 + 175400573 taataatcttgccactgcattccagccttggtgacaaagtgagaccctttctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29388209 53 + 173848474 taataatcttgccactgcattccagccttggtgacaaagtgagaccctttctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5188691 53 +   6154872 taataatcttgccactgcattccagccttggtgacaaagtgagaccctttctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74186010 53 + 122973662 tgatgatcttgccactgcactccagccttggtgacaaagtgagatcccttctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29364521 53 + 172585720 tgatgatcttgccactgcactccagccttggtgacaaagacagaccctttctc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29025406 53 - 170955103 tgatgatcttgccactgcactccagccttggtgacaaagacagaccctttctc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2005808 53 -   2996164 tgatgatcttgccactgcactccagccttggtgacaaagacagacccttcctc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1877418 53 -   2157725 tgatgatcttgccactgcactccagccttggtgacaaagacagaccctttctc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28322656 53 -  71996105 tgatgatcttgccactgcactccagccttggtgacaaagtaagaccctttctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2002125 53 +   2316924 tgatgatcttgccactgcactccagccttggtgacaaagacagaccctttctc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1886155 53 -   3067355 tgatgatcttgccactgcactccagccttggtgacaaagtaagaccctttctc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171408361 53 - 171630274 tgatgatctcaccactgcactccagcctgggtgacaaagtgagaccGTTTTGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            235146 53 -    375362 tgatgatctcaccaatgcactgcagcctgggtgacaaagtgagaTATTTTTGC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      234036 53 -    373274 tgatgacctcaccactgcactgcagcctgggtgacaaagtgagaccctTTTGC
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1541066 26 -   2232465 --------------------------CTTCTTAGCAAAGCCA-ATTCTCCTTC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             55800 14 -    302817 CAATAATCTCACCA---------------------------------------
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      971724 445 -   3516910 I
e canFam3.chr35             25901441 32 +  26524999 I
e aotNan1.NW_018494050v1      168092  0 -    285216 C

a score=922484.000000
s hg38.chr6_GL000254v2_alt    166597 110 +   4827813 TAACGCTGGTTTGGTTGGGATTTATTATTACTCT---C-ACAGACTTCATATAGGAGGAATTTCTGGTTTCAACAAAGTGC-A-GGATTTAGTAATGTGCTTATATCATTAAGTCA---------
s panTro5.chr6              29154094 110 + 175400573 TAACGCTGGTTTGGTTGGGATTTATTATTACTCT---C-ACAGACTTCATATAGGAGGAATTTCTGGGTTCAACAAAGTGC-A-GGATTTAGTAATGTGCTTATATCATTAAGTCA---------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29388262 110 + 173848474 TAACGCTGGTTTGGTTGGGATTTATTATTACTCT---C-ACAGACTTCATACAGGAGGAATTTCTGGGTTCAACAAAGTGC-A-GGATTTAGTAATGTGCTTATATCATTAAGTCA---------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5188744 110 +   6154872 TAATGCTGGTTTGGTTGGGATTTATTATTACTCT---C-ACAGACTTCATATAGGAGGAATTTCTGGGTTCAACAAAGTGC-A-GGATTTAGTAATGTGCTTATATCATTAAGTCA---------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74186063 106 + 122973662 TAACGCTGGTTTGGTTGGG----ATTATTATTCT---C-AGAGACTTCATATAGGAGGAATTTCTGGCTTCAACAAAGTGC-A-GGATTTAGTAATGTGCTTACATCATTAAGTCA---------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29364574 106 + 172585720 TAACGCTCATTTGGTT-GGAC---TTATTATTCT---C-AGAGACTTCATATAGGAGGAATTTCTGGGTTCAACAAAGTAC-A-GGATTTAGTAAGGTGCTTACATCATTAAGTCA---------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29025459 106 - 170955103 TAACGCTCATTTGGTT-GGAC---TTATTATTCT---C-AGAGACTTCATATAGGAGGAATTTCTGGGTTCAACAAAGTAC-A-GGATTTAGTAAGGTGCTTACATCATTAAGTCA---------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2005861 106 -   2996164 TAATGCTCGTTTGGTT-GGAC---TTATTATTCT---C-AGAGACTTCATATAGGAGGAATTTCTGGGTTCAACAAAGTAC-A-GGATTTAGTAAGGTGCTTACATCATTAAGTCA---------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1877471 106 -   2157725 TAACGCTTGTTTGGTT-GGACTTATTATTATTCT---C-AGAGACTTCATATAGGAGGAATTTCTGGGTTCAACAAAGTAC-A-GGATTTAGTAAGGTGCTTACATC---AAGTCA---------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28322709 109 -  71996105 TAACGCTGGTTTGGTT-GGACTTATTATTATTCT---C-AGAGACTTCATATAGGAGGAATTTCTGGGTTCAACAAAGTAC-A-GGATTTAGTAATGTGCTTACATCATTAAGTCA---------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2002178 109 +   2316924 TAACGCTCGTTTGGTT-GGACTTATTATTATTCT---C-AGAGACTTCATATAGGAGGAATTTCTGGGTTCAACAAAGTAC-A-GGATTTAGTAAGGTGCTTACATCATTAAGTCA---------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1886208 110 -   3067355 TAACGCTGCTTTGGTTGGGACTTATTATTATTCT---C-AGAGACTTCATATAGGAGGAATTTCTGGGTTCAACAAAGTAC-A-GGATTTAGTAATGTGCTTACATCATTAAGTCA---------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171408414 103 - 171630274 TAATGCTGATTTGGATGGGAT---TTATTATCCC---T-ATAGGCTTCATATAGGAGGAACTTCTG----CAACATAGTGC-A-GGATCTAGTAAGTTACTTACATAATTAAGTCA---------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            235199 103 -    375362 TAATGCTGATTTGGATGGGGT---TTATTATTCC---C-ACAGACTTCATATAGGAGGAACTTCTG----CAACATAGTGC-A-GGATTTAGTAAGTTACTTACATAATTAAGTCA---------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      234089 101 -    373274 TAATGCTGATTTGGATGGGGT---TTATTATTCC---C-ACAGACTTCATATAGGAGGAACTTCTG----CAACATAGTGC----GATTTAGTAAGTTACTTACATAATTAAGTCA---------
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1541092 104 -   2232465 AA--------TTGCTTGGGTTTTCTTATTATTCTTTGC-AGAGACCTTACACAGGAGGAATTTCTG-GTTAAACAAACCGC-A-GGAATTAGTCATTTAATTACATAATTAAGTTA---------
i otoGar3.GL873742         C 0 I 626
s canFam3.chr35             25901473 108 +  26524999 TTACACTGGTTTGGCAGAGCT---TTCCCATTCC---T-GAGACCTCAACGCAGGCGGAATTCCTGCATTCGAGGAGGTGCCC-GGGTGTTGTGATTTAATTACACAATCAAGTAA---------
i canFam3.chr35            I 32 I 1
s dasNov3.JH561790             55814 110 -    302817 --AGGCTGGTTCTCTTGGGCT---------TTCT---CAAGAGACCTGACACAGGAGGAACTCCTGGGTTAAACGAGGTGC-AGGGGTTTAGTCATTTAATTTCATAATTACATTAACTAAGTTA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      971724 445 -   3516910 I
e aotNan1.NW_018494050v1      168092   0 -    285216 C

a score=395417.000000
s hg38.chr6_GL000254v2_alt    166707 44 +   4827813 AAATTTAGTGCAGGACGGAGCTAGTGG--GCAAGTCTCTTAGTCTC
s panTro5.chr6              29154204 44 + 175400573 AAATTTAGTGCAGGACGGAGCTAGTGG--GCAAGTCTCTTAGTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29388372 44 + 173848474 AAATTTAGTGCAGGACGGAGCTAGTGG--GCAAGTCTCTTAGTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5188854 44 +   6154872 AAATTTACTGCAGGACGGAGCTAGTGG--GCAAGTCTCTTAGTCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74186169 44 + 122973662 AAATTTCTTGCAGGACAGAGCTAGTGG--GCAAGCCTCTTAGTCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29364680 44 + 172585720 AAATTTATTGCAGGACGGAGCTAGTGG--GCAAGTCTCTTAGTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29025565 44 - 170955103 AAATTTATTGCAGGATGGAGCTAGTGG--GCAAGTCTCTTAGTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2005967 44 -   2996164 AAATTTATTGCAGGACGGAGCTAGTGG--GCAAGTCTCTTAGTCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1877577 44 -   2157725 AAATTTATTGCAGGACGGAGCTAGTGG--GCAAGTCTCTTAGTCTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28322818 44 -  71996105 AAATTTATTGCAGGACGGAGCTAGTGG--GCAAGTCTCTTAGTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2002287 44 +   2316924 AAATTTATTGCAGGACGGAGCTAGTGG--GCAAGTCTCTTAGTCTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1886318 44 -   3067355 AAATTTATTGCAGGAGGGAGCTAGTGG--GCAAGTCTCTTAGTCTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171408517 44 - 171630274 AAATTTATTGCAGGACCGAGCTGGTGG--GCAAGTCTCTTAGTGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            235302 44 -    375362 AAATTTATTGCCGGACCGAACTACTAG--GCAAGTCCCATAGTGTC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      234190 44 -    373274 AAATTTATTGCAGGACGGAGCTAGTGG--GCAAGTCTGTTAGTGTC
i cebCap1.NW_016108108v1   C 0 C 0
s canFam3.chr35             25901582 43 +  26524999 ACTTTTCTTGCAGGCCTGAACCCATGAATGCTGGTGTGTCAGC---
i canFam3.chr35            I 1 C 0
s dasNov3.JH561790             55924 30 -    302817 ACATTTATTGCAGGGCCCAGGCAGTGA--GCA--------------
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      971724 445 -   3516910 I
e otoGar3.GL873742           1541196 626 -   2232465 I
e aotNan1.NW_018494050v1      168092  0 -    285216 C

a score=149815.000000
s hg38.chr6_GL000254v2_alt    166751 14 +   4827813 AAGAAAAAGGGCAC
s panTro5.chr6              29154248 14 + 175400573 AAGAAAAAGGGCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29388416 14 + 173848474 AAGAAAAAGGGCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5188898 14 +   6154872 AAGAAAAAGGGCAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74186213 14 + 122973662 AAGAAAAAGGGCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29364724 14 + 172585720 AAGAAAAAGGGCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29025609 14 - 170955103 AAGAAAAAGGGCAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2006011 14 -   2996164 AAGAAAAAGGGCAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1877621 14 -   2157725 AAGAAAAAGGGCAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28322862 14 -  71996105 AAGAAAAAGGGCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2002331 14 +   2316924 AAGAAAAAGGGCAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1886362 14 -   3067355 AAGAAAAAGGGCAC
i colAng1.NW_012115566v1   C 0 I 352
s calJac3.chr4             171408561 14 - 171630274 AAGAAAAAGGGCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            235346 14 -    375362 AAGAAAAAGGGCAC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      234234 14 -    373274 AAGAAAAAGGGCAC
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1541822 14 -   2232465 aggaaaaCGGGCAC
i otoGar3.GL873742         I 626 I 2
s canFam3.chr35             25901625  1 +  26524999 -------------C
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             55954  0 -    302817 C
e proCoq1.NW_012147953v1      971724 445 -   3516910 I
e aotNan1.NW_018494050v1      168092  0 -    285216 C

a score=806249.000000
s hg38.chr6_GL000254v2_alt    166765 95 +   4827813 TAAGAAACATAGCCCAGGCATTTAGGCTTCCTCTT-ACATTACTGTGGTCTGCAATGAGGTCTCCTGGAGCACAAGTTTCACTTCTCCCCAGATCA
s panTro5.chr6              29154262 95 + 175400573 TAAGAAACATAGCCCAGGCATTTAGGCTTCCTCTT-ACATTACTGTGGTCTGCAATGAGGTCTCCTGGAGCACAAGTTTCACTTCTCCCCAGATCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29388430 95 + 173848474 TAAGAAACATAGCCCAGGCATTTAGGCTTCCTCTT-ACATTACTGTGGTCTGCAATGAGGTCTCCTGGAGCACAAGTTTCACTTCTCCCCAGATCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5188912 95 +   6154872 CAAGAAACATAGCCCAGGCATTTAGGCTTCCTCTT-ACATTACTGTGGTCTGCAATGAGGTCTCCTGGAGCACAAGTTTCACTTCTCCCCAAATCG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74186227 95 + 122973662 TAAGAAACACAGCCCAGACATTTAGGCTTCCTCTT-ACATTACTGTGGTCTGCAATGAGGTCTCCTCGAGCACAAGTTTCACTTCTCCCCAAATCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29364738 95 + 172585720 TAAGAAACACAGCCCAGGCGTTTGGGCTTCCTCTT-ACATTACTGTGGTCTGCAATGAGGTCTCCTGGAGCACAGGTTTCACTTCTCCCCAGATTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29025623 95 - 170955103 TAAGAAACACAGCCCAGGCGTTTAGGCTTCCTTTT-ACATTACTGTGGTCTGCAATGAGGTCTCCTGGAGCACAGGTTTCACTTCTCCCCAGATTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2006025 95 -   2996164 TAAGAAACACAGCCCAGGCATTTAGGCTTCCTCTT-ACATTACTGTGGTCTGCAATGAGGTCTCCTGGAGCACAGGTTTCACTTCTCCCCAGATTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1877635 95 -   2157725 TAAGAAACACAGCCCAGGCATTTAGGCTTCCTCTT-ACATTACTGTGGTCTGCAATGAGGTCTCCTGGAGCACAGGTTTCACTTCTCCCCAGATTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28322876 95 -  71996105 TAAGAAACACAGCCCAGGCATTTAGGCTTCCTCTT-ACATTACTGTGGTCTGCAATGAGGTCTCCTGGAGCACAGGTTTCACTTCTCCCCAGATTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2002345 95 +   2316924 TAAGAAACACAGCCCAGGCATTTAGGCTTCCTCTT-ACATTACTGTGGTCTGCAATGAGGTCTCCTGGTGCACAGGTTTCACTTCTCCCCAGACTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1886728 95 -   3067355 TAAGAAACACAGCCCAGGAATTTAGGCTTCCTCTT-ACATTACTGTGGTCTGCAATGAGGTCTCCTGGAGCACAGGTTTCACTTCTCCCCAGATTG
i colAng1.NW_012115566v1   I 352 C 0
s calJac3.chr4             171408575 93 - 171630274 TAAGAAAC--AGCCCCAGCATTCTGGCTTCCTCTT-AAATTACTGTGGTCTGCATTGAGGGCCCCTGGACCCCAAGTTTCGCTTCTCCCCAAATCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            235360 93 -    375362 TGAGAAAC--AGCCCCAGCATTCTGTCTTCCTCTT-AGATTTCTGTGGTCTGCAGTGAGGGCTCCTGGACCGCAAGTTTCACTTCTCCCCAAATTA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      234248 94 -    373274 TAAGAAAC--AGCCCCAGCATTCTGGCTTCCTCTTAAGATTACTGTGGTCTGCAATGAGGGTCCCTGGACCCCAAGTTTCACTTCTCCCCAAATCA
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1541838 79 -   2232465 AAAAAAATGCAGTC----------AGCTCTCTCTC-AGAATATTGTGCTCTA----GCAGTCTCCTGCAGCAT--GTTTTACTTATCCTTCACTCG
i otoGar3.GL873742         I 2 C 0
s canFam3.chr35             25901626 89 +  26524999 TAAGAAGTGATGCCCCAGGATCCAGCCTC---CTC-AGACCAAGGCTGTTCACAGGGAGGT---CTGCAGCGCACATTTCCCTTGCCCACACATCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             55954 46 -    302817 --------------CAGGCA---------CAGCTT-CGA-----------------GAGGGCCCGTGA---GCTAGTTACACATTGTCCC------
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      971724 445 -   3516910 I
e aotNan1.NW_018494050v1      168092  0 -    285216 C

a score=2317949.000000
s hg38.chr6_GL000254v2_alt    166860 214 +   4827813 TCTTTAGTTGTACTCTACAT-TTTTTCACGTTATTTTCCCCCTCTCCTAAT---------TAACTTTTCAAAGGATAGAAGCCATGCTCTCTTGTATTCTCTTCAGGAG-CAAGTTCAGCTGGGGCACCCAACACTGGTTGAATTGTCT-ATTTGAATAAAAGAA----TGTTTTTCATTTGTGAAG---AAGCAACT----CAACCACCATTGGTATGCTAAGAAC----CTTTTGAGTT
s panTro5.chr6              29154357 214 + 175400573 TCTTTAGTTGTACTCTACAT-TTTTTCACGTTATTTTCCCCCTCTCCTAAT---------TAACTTTTCAAAGGATAGAAGCCATGCTCTCTTGTATTCTCTTCAGGAG-CAAGTTCAGCTGGGGCACCCAACACTGGTTGAATTGTCT-ATTTGAATAAAAGAA----TGTCTTTCATTTGTGAAG---AAGCAACT----CAACCACCATTGGTATGCTAAGAAC----CTTTTGAGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29388525 214 + 173848474 TCTTTAGTTGTACTCTACAT-TTTTTCACGTTATTTTCCCCCTCTCCTAAT---------TAACTTTTCAAAGGATAGAAGCCATGCTCTCTTGTATTCTCTTCAGGAG-CAAGTTCAGCTGGGGCACCCAACACTGGTTGAATTGTCT-ATTTGAATAAAAGAA----TGTCTTTCATTTGTGAAG---AAGCAACT----CAACCACCATTGGTATGCTAAGAAC----CTTTTGAGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5189007 214 +   6154872 TCTTTAGTTGTACTCTACAT-TTTTTCACGTTATTTTCCCCCTCTCTTAAT---------TAACTTTTCAAAGGATAGAAGCCATGCTCTCTTGTATTCTCTTCAGGAG-CAAGTTCAGCTGGGGCACCCAACACTGGTTGAATTGTCT-ATTTGAATAAAAGAA----TGTCTTTCATTTGTGAAG---AAGCAACT----CAACCACCATTGGTATGCTAAGAAC----CTTTTGAGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74186322 218 + 122973662 TCTTTAGTCGTACTCTGTTT-TTTTTCACGTTATTTTCCCCCTCTCCTAATTAA-----CTAACTTTTCCAAGGATAGAAGCCATGTTCTCTTACATTCTCCTCAGAAG-CAAGTTCAGCTGGGGCACCCAACACTGGTTGAATTGTCT-ATTTGAATAAAAAAA----TGTCTTTCATTTGTGAAT---AAGCAACT----CAACCACCATTGGTATGCTAAGAAC----CTTTTGAGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29364833 210 + 172585720 TCTTTAGTTGTACTCTACTT-TTTTTCACGTTATTTTCCCCCTCTCCTAATTAA-----CTAACTTTTCAAAGGATAGAAGCTATGTTCTCCTGTATTCTCTTCAGGAG-CAAGTTCAGCTGGGGCACCCAACACTGGCTGAATTGTCT-GTTTGAATAAAATAA----TGTCTTTCATTTGTGAAG---AAACAACT----CAACCACCACTGGTATGCTAAGAAC----CT--------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29025718 210 - 170955103 TCTTTAGTTGTACTCTACTT-TTTTTCACGTTATTTTCCCCCTCTCCTAATTAA-----CTAACTTTTCAAAGGATAGAAGCCATGTTCTCCTGTATTCTCTTCAGGAG-CAAGTTCAGCTGGGGCACCCAACACTGGCTGAATTGTCT-GTTTGAATAAAATAA----TGTCTTTCATTTGTGAAG---AAACAACT----CAACCACCACTGGTATGCTAAGAAC----CT--------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2006120 210 -   2996164 TCTTTAGTTGTACTCTACTT-TTTTTCACGTTATTTTCCCCCTCTCCTAATTAA-----CTAACTTTTCAAAGGATAGAAGCCATGTTCTCCTGTATTCTCTTCAGGAG-CAAGTTCAGCTGGGGCACCCAACACTGGCTGAATTGTCT-GTTTGAATAAAATAA----TGTCTTTCATTTGTGAAG---AAACAACT----CAACCACCACTGGTATGCTAAGAAC----CT--------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1877730 210 -   2157725 TCTTTAGTTGTACTCTACTT-TTTTTCACGTTATTTTCCCCCTCTCCTAATTAA-----CTAACTTTTCAAAGGATAGAAGCCATGTTCTCCTGTATTCTCTTCAGGAG-CAAGTTCAGCTGGGGCACCCAACACTGGTTGAATTGTCT-GTTTGAATAAAATAA----TGTCTTTCATTTGTGAAG---AAACAACT----CAACCACCACTGGTATGCTAAGAAC----CT--------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28322971 210 -  71996105 TCTTTAGTTGTACTCTACTT-TTTTTCACGTTATTTTCCCCCTCTCCTAATTAA-----CTAACTTTTCAAAGGATAGAAGCCATGTTCTCCTGTATTCTCTTCAGGAG-CAAGTTCAGCTGGGGCACCCAACACTGGCTGAATTGTCT-GTTTGAATAAAATAA----TGTCTTTCATTTGTGAAG---AAGCAACT----CAACCACCACTGGTATGCTAAGAAC----CT--------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2002440 210 +   2316924 TCTTTAGTTGTACTCTACTT-TTTTTCACGTTATTTTCCCCCTCTCCTAATTAA-----CTAACTTTTCAAAGGATAGAAGCCATGTTCTCCTGTATTCTCTTCAGGAG-CAAGTTCAGCTGGGGCACCCAACACTGGCTGAATTGTCT-GTTTGAATAAAATAA----TGTCTTTCATTTGTGAAG---AAACAACT----CAACCACCACTGGTATGCTAAGAAC----CT--------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1886823 209 -   3067355 TCTTTAGTTGTACTCTACTT-TTTTTCACGTTA-TTTCCCCCTCTCCTAATTAA-----CTAACTTTTCAAAGAATAGAAGCCATGTTCTCCTGTATTCTCTTCAAGAG-CAAGTTCAGCCGGGACACCCAACACTGGTTAAATTGTCT-GTTTGAATAAAATAA----TGTCTTTCATTTGTGAAG---AAGCAACT----CAACCACCATTGGTATGCTAAGAAC----CT--------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171408668 218 - 171630274 TCTTTAGTTGTCCTCTACCT-TTTTTCACGTTAGCCTCCCCCTCTCCTAATTGG-----CTAACTTTTCAAAGGACAGAAGCCATGTTCTCTTGTATTCTCTTCAGGAG-CAAGTTCAGCTGGGGCACCCAACACTGGCT-AATTGTCT-ATTTGAATAAAAGAA----AGTCTTTCATTTGTGGAAA--AAGCAGTT----CACTCACCACTGGTATACTAAGAAC----ATTTTGAGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            235453 214 -    375362 TCTTTAGTTGCACTCTCCTT-TTTTTCATGTTATCCTCCCCCTCTCCTAAT---------TAACTTTTTGAAGGACAGAAGCCATGTTCTCTTATATTCTCTTCAGGAG-CAAGTTCAGCT--GGCACCCAACACTGGTT-AATTTTCT-ATTTGAATAAAAGAA----AGTCTTTCATTTGTGAAAAAGAAGCAGTT----CACTCACCACTGGTATACTAAGAAC----CTTTTGAGTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      234342 219 -    373274 TCTTTAGTTGTACTCTACTT-TTTTTCATGTTATTCTCCCCCTCTCCTAATTGA-----CTAACTTTTCAAAGGACAGAAGCCATGTTCTCGTGTATTCTCTTCAGCAG-CAAGTTCAGCT-GGGCACCCAACACTGGTT-AATTGTCT-ATCTGAATAAAAGAA----AGTCTTTCATTGGTGAAAAAGAAGCAATT----CACTCACCACTGGTATACTAAGAAC----CTTTAGAGTT
i cebCap1.NW_016108108v1   C 0 C 0
s proCoq1.NW_012147953v1      972169 220 -   3516910 TCTTTAGTTGTGCTCTACTTCTTTTTCATGTTATTTTTCCCCT-TCCTAATTGACT---TTAACTTTTTCAAGGAGAGAAGCCAAGTTCTCTTGTATTCTCCTCAGGAGTCAAGTTCAGCTGAGGCACCTAACACTGGTT-AGTTGTGT-ATTTGAATCAAAGAA----tgtctctcacctgtgaag---acgcaact----cacccaccattggtacgccaagaac----cttttgagtt
i proCoq1.NW_012147953v1   I 445 C 0
s otoGar3.GL873742           1541917 210 -   2232465 CCATTGATTGTGCTCCACTTCTTTTTCATA----TTTTCCCCT-TTTAA----------TTAACTTTTCCAGGGACAGAAGCTGTGCTCTCTTGTATT---CTCAGGAATCATATTCAGCTGGAGCACCCAACTGTTGTT-AGTTGTAT-ATTTGAATCAAAGAA----TGTCCTTCATATGTAAAG---AGGCAACTCACCCACCCACCACTGAAACATTAAAAAT----GCTTTGAGTT
i otoGar3.GL873742         C 0 I 152
s canFam3.chr35             25901715 228 +  26524999 GCTTTGGTTGCTGTCTGCTCCTTTCTCATGTTATTTTTTCC---TCTTAACTGACTTTACTAACTTTTCCAAGAACGGAAGCCATGCTCCCTTGTATCCTCCTGGGGAGTCAAGTTCAGCTGGGGGACCCAACACTGGGT-AATTGTGTCATTTGAATCAAAGAATCATTGTCCTTCATTAGTGAAG---AGGCAACA----TACCCACCATTAGTACACTAAGAATGAAACTTTTCAG--
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             56000 202 -    302817 -------GTGTTCTCCACTG-CTTT----GCCATTTTTCTCCC-TCTTAATGGACTTTGTTAACTTTTCCAAGGACAGAAGCCATGTTTTCTTGCATTCTTTTCAGAAATCAAGTTCAGCTGGGGCACACAACTCTAGTT----------ATTTGAATCAAAGAACCATTGTCTTGTATCTGCAAAG---AACGA-------AAGCCTACAGTGATCCACTGGGAAA----CTTTGGAG--
i dasNov3.JH561790         C 0 C 0
e aotNan1.NW_018494050v1      168092   0 -    285216 C

a score=873470.000000
s hg38.chr6_GL000254v2_alt    167074  92 +   4827813 TT--GTTTTTTATTT-------------------------------------------------------------------------------------TGCTGGGA---------------------------------------------------GGAGATACGTGATTTCCACGTATACTCTTTGGTCTGCATCTCAGGTAACTAAAGGCATTAGCAAATGGCTC
s panTro5.chr6              29154571  92 + 175400573 TT--GTTTTTTATTT-------------------------------------------------------------------------------------TGCTGGGA---------------------------------------------------GGAGATATGTGATTTCCACATATACTCTTTGGTCTGCATCTCAGGTAACTAAAGGCATTAACAAATGGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29388739  92 + 173848474 TT--GTTTTTTATTT-------------------------------------------------------------------------------------TGCTGGGA---------------------------------------------------GGAGATATGTGATTTCCACATATACTCTTTGGTCTGCATCTCAGGTAACTAAAGGCATTAACAAATGGCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5189221  92 +   6154872 TT--GTTTTTTATTT-------------------------------------------------------------------------------------TGCTGGGA---------------------------------------------------GGAGATACGTGATTTCCACGTGTACTCTTTGGTCTGCATCTCAGGTAACTAAAGGCATTAACAAACGGCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74186540  92 + 122973662 TT--GTTTTTTATTT-------------------------------------------------------------------------------------TGCTGGGA---------------------------------------------------GGAGATATGTGATTTCCATCTATACTCTTTGGTCTGCATCTCAGATAACTAAAGGCATTAACAAATGGCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29365043  89 + 172585720 -----TTTTTGATTT-------------------------------------------------------------------------------------TGCTGGAA---------------------------------------------------GGAAATACGTGATTTCCATCTATACTCTTTGGTCTGGATCTCCGATAACTAAAGGCATTAACAAATGGCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29025928  89 - 170955103 -----TTTTTGATTT-------------------------------------------------------------------------------------TGCTGGAA---------------------------------------------------GGAGATATGTGATTTCCATCTATACTCTTTGGTCTGGATCTCCGATAACTAAAGGCATTAACAAATGGCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2006330  89 -   2996164 -----TTTTTGATTT-------------------------------------------------------------------------------------TGCTGGAA---------------------------------------------------GGAGATACGTGATTTCCATCTATACTCTTTGGTCTGGATCTCCGATAACTAAAGGCATTAACAAATGGCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1877940  89 -   2157725 -----TTTTTGATTT-------------------------------------------------------------------------------------TGCTGGAA---------------------------------------------------GGAGATACGTGATTTCCATCTATACTCTTTGGTCTGGATCTCCGATAACTAAAGGCATTAACAAATGGCTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28323181  89 -  71996105 -----CTTTTGATTT-------------------------------------------------------------------------------------TGCTGGAA---------------------------------------------------GGAGATACATGATTTCCATCTATACTCTTTGGTCTGGATCACCAATAACTAAAGGCATTAACAAATGGCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2002650  89 +   2316924 -----TTTTCGATTT-------------------------------------------------------------------------------------TGCTGGAA---------------------------------------------------GGAGATACGTGATTTCCATCTATAATCTTTGGTCTGGATCTCCGATAACTAAAGGCATTAACAAATGGCTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1887032  89 -   3067355 -----TTTTTTATTT-------------------------------------------------------------------------------------TGCTGGAA---------------------------------------------------GAAGATACGTGATTTCCATCTATACTCTTTGGTCTGGATCTCAAATAACTAAAGGTATTAACAAATGGTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171408886  93 - 171630274 TTG-GGTTTGTATTT-------------------------------------------------------------------------------------TGCTGGGA---------------------------------------------------GGAGACAGGCGATTTCCATCTATACTCTTTGGTCTGGATCTCCGATAACTAAAGGCATTAGCACATGGCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            235667  92 -    375362 TT--GGTTTTTATTT-------------------------------------------------------------------------------------TGCTGGGA---------------------------------------------------GGAGACAGGTGATTTCCATCTATACTCTTTGGTCTGGATCTCTGACAACTAAAGGCATTAGCACATGGCTC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      234561  92 -    373274 TT--GGTTTTTATTT-------------------------------------------------------------------------------------TGCTGGGA---------------------------------------------------GGAGACAGGCGATTTCCATCTATACTCTTTGGTCTGGATCTCTGATAACTAAAGGCATTAGCACATGGCTC
i cebCap1.NW_016108108v1   C 0 C 0
s proCoq1.NW_012147953v1      972389  92 -   3516910 --ttgttttttattt-------------------------------------------------------------------------------------tgctggga---------------------------------------------------ggagatgtgtgattgccctctatactctttgGTCTGGATCTCAGATATCGGAAGGCATTAATTAATGGCTC
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1542279 222 -   2232465 --ttattttctattttttagtaaagacagggtctcactcttgctcaggctggtctcaaactcctgaccttaagcaatccacttactcctactgcccagagtgctaggattacaagcatgagccactgtattaggccTGAGTTTTGCTTTTAATTTACTGAGTGATGTGCAATTTCCCTCTATATTGTTTGGTCTGGATCTCAGATAAC------TCTTTGGTCTTGGCTC
i otoGar3.GL873742         I 152 C 0
s canFam3.chr35             25901943  75 +  26524999 ----------------------------------------------------------------------------------------------------TGCTGGGA---------------------------------------------------AGAGAT--GCAATTCCTGTTCACAGTCTTTGGCTGGGATCGCAGATAACTAAGGGCATTGACAAGTGGC--
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             56202  76 -    302817 -----TTGTTTTTTT-------------------------------------------------------------------------------------TGCTGGGA---------------------------------------------------GGAGATGTGTGATTTCCATCTACTCTCTTAGATC-------------ACCACAGGCATTAACACATGGCTT
i dasNov3.JH561790         C 0 C 0
e aotNan1.NW_018494050v1      168092   0 -    285216 C

a score=3152746.000000
s hg38.chr6_GL000254v2_alt    167166 309 +   4827813 TCATTTACCAT-CTGACAGTTATTTGCTCTTAATTTCATAGTGC-CT-TTAAGTGTTAGGCTG-----TT---ACATGCATTCTCTCATCTTCTC-ACTTAATTGTACATGGTGGAGGGTATGGGCCATGTTCAGTTTCCCTTTATTCTTTGAACCTATCTCTT-CTAGGCCTTGTCTGCTCTTGGGGAAGATGGTCTTCTTTGCATGTT--GGCCTTTATCAG------AAAAAACAAGAGC----ACCTGAAGACACACAGGCATGTGCACATACGTGCATGC---------------------------ACAAACACACA---CTTCCTGGAACAGCAAAAGAATTAAGGA---AGAAGTTATT
s panTro5.chr6              29154663 309 + 175400573 TCATTTACCAT-CTGACAGTTATTTGCTCTTAATTTCATAGTGC-CT-TTAAGTGTTAGGCTG-----TT---ACATGCATTCTCTCATCTTCTC-ACTTAATTGTACATGGTGGAGGGTAGGGGCCATGTTCAGTTTCCCTTTCTTCTTTGAACCTATCTCTT-CTAGGCCTTGTCTGCTCTTGGGGAAGATGGTCTTCTTTGCATGTT--GGCCTTTATCAG------AAAAAACAAGAGC----ACCTGAAGACACACAGGCATGTGCACATACGTGCATGC---------------------------ACAAACACACA---CTTCCTGGAACAGCAAAAGAATTAAGGA---AGAAGTTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29388831 309 + 173848474 TCATTTACCAT-CTGACAGTTATTTGCTCTTAATTTCATAGTGC-CT-TTAAGTGTTAGGCTG-----TT---ACATGCATTCTCTCATCTTCTC-ACTTAATTGTACATGGTGGAGGGTAGGGGCCATGTTCAGTTTCCCTTTCTTCTTTGAACCTATCTCTT-CTAGGCCTTGTCTGCTCTTGGGGAAGATGGTCTTCTTTGCATGTT--GGCCTTTATCAG------AAAAAACAAGAGC----ACCTGAAGACACACAGGCATGTGCACATACGTGCATGC---------------------------ACAAACACACA---CTTCCTGGAACAGCAAAAGAATTAAGGA---AGAAGTTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5189313 312 +   6154872 TCATTTACCAT-CTGATAGTTATTTGCTCTTAATTTCATAGTGC-CT-TTAAGTGTTAGGCTG-----TT---ACATGCATTCTCTCATCTTCTC-ACTTAATTGTACATGGTGGAGGGTAGGGGCCATGTTCAGTTTCCCTTTATTCTTTGAACCTATCTCTT-CTAGGCCTTGTCTGCTCTTGGGGAAGATGGTCTTCTTTGCATGTT--GGCCTTCATCAG------AAAAAACAAGAGC----ACCTGAAGACTCACAGGCATGTGCACATACGTGCATGC---------------------------ACAAACACACA---CTTCCTGGAACAGCAAAAGAATTAAGGAAGGAGAAGTTATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74186632 300 + 122973662 TCATTTACCAT-CTGATAGCTATTTGCTCTTAATGGCA-----------CAAGTGTTAGGCTG-----TT---ACATGCATT-TCTCATCTTCTC-ACTTAATTGTACATGGTGGAGGGTAGGGGCCATGTTCAGTTTCCCTTTATTCTTTGAACCTATCTTTTATTAGGCCTTGTCTGCTCTTGGGGAAGATG---TTCTTTGTGTGTT--GGCCTTTATCAG------AAAAAAGAAGAGC----ACCTGAAGACACACAGGCATGTGCGCAGGCGTGCATGC---------------------------ACAAACACACA---CTTCCTGGAACAGCAAAAGAACTAAGGAAGGAGAAGTTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29365132 292 + 172585720 TCATTTACCAT-CTGATAGCTATTTGCTTTTAATTTCATAGTGC-CT-TTAAGTGTTAGGCAG-----TT---ACATGCATTCTCTCATCTTCTC-ACTTAATTGTACATGGTGGAGGGTGGGGACCATGTTCAGTTTCCCTTTATTCTTTGAACCTA-------------------TGCTCTTGAGGAAGATGGTCTTCTTTGCATGTT--GGCCTTTATCAG------AAAAAACAACAGC----ACCTGAAGACACACAGGCATGTGCACGTGCGTGCATGC---------------------------ACAA--ACATA---CTTCCTGGAACAGCAAAAGAATTAAGGAAGGAGAAGTTATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29026017 292 - 170955103 TCATTTACCAT-CTGATAGCTATTTGCTTTTAATTTCATAGTGC-CT-TTAAGTGTTAGGCAG-----TT---ACATGCATTCTCTCATCTTCTC-ACTTAATTGTACATGGTGGAGGGTGGGGGCCATGTTCAGTTTCCCTTTATTCTTTGAACCTA-------------------TGCTCTTGAGGAAGATGGTCTTCTTTGCATGTT--GGCCTTTATCAG------AAAAAACAACAGC----ACCTGAAGACACACAGGCATGTGCACGTGCGTGCATGC---------------------------ACAA--ACATA---CTTCCTGGAACAGCAAAAGAATTAAGGAAGGAGAAGTTATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2006419 292 -   2996164 TCATTTACCAT-CTGATAGCTATTTGCTTTTAATTTCATAGTGC-CT-TTAAGTGTTAGGCAG-----TT---ACATGCATTCTCTCATCTTCTC-ACTTAATTGTACATGGTGGAGGGTGGGGGCCATGTTCAGTTTCCCTTTATTCTTTGAACCTA-------------------TGCTCTTGAGGAAGATGGTCTTCTTTGCATGTT--GGCCTTTATCAG------AAAAAACAACAGC----ACCTGAAGACACACAGGCATGTGCACGTGCGTGCATGC---------------------------ACAA--ACATA---CTTCCTGGAACAGCAAAAGAATTAAGGAAGGAGAAGTTATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1878029 292 -   2157725 TCATTTACCAT-CTGATAGCTATTTGCTTTTAATTTCATAGTGC-CT-TTAAGTGTTAGGCAG-----TT---ACATGCATTCTCTCATCTTCTC-ACTTAATTGTACATGGTGGAGGGTGGGGGCCATGCTCAGTTTCCCTTTATTCTTTGAACCTA-------------------TGCTCTTGAGGAAGATGGTCTTCTTTGCATGTT--GGCCTTTATCAG------AAAAAACAACAGC----ACCTGAAGACACACAGGCATGTGCACGTGCGTGCATGC---------------------------ACAA--ACATA---CTTCCTGGAACAGCAAAAGAATTAAGGAAGGAGAAGTTATT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28323270 292 -  71996105 TCATTTACCAT-CTGATAGCTATTTGCTTTTAATTTCATAGTGC-CT-TTAAGTGTTAGGCAG-----TT---ACATGCATTCTCTCATCTTCTC-ACTTAATTGTACCTGGTGGAGGGTGGGGGCCATGTTCAGTTTCCCTTTATTCTTTGAACCTA-------------------TGCTCTTGAGGAAGATGGTCTTCTTTGCATGTT--GGCCTTTATCAG------AAAAAACAACAGC----ACCTGAAGACACACAGGCATGTGCACGTGCATGCATGC---------------------------ACAA--ACATA---CTTCCTGGAACAGCAAAATAATCAAGGAAGGAGAAGTTATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2002739 292 +   2316924 TCGTTTACCAT-CTGATAGCTATTTGCTTTTAATTTCATAGTGC-CT-TTAAGTGTTAGGCAG-----TT---ACATGCATTCTCTCATCTTCTC-ACTTAATTGTACATGGTGAAGGGTGGGGGCCATGCTCAGTTTCCCTTTATTCTTTGAACCTA-------------------TGCTCTTGAGGAAGATGGTCTTCTTTGCATGTT--GGCCTTTATCAG------AAAAAACAACAGC----ACCTGAAGACACACAGGCATGTGCACGTGCGTGCATGC---------------------------ACAA--ACATA---CCTCCTGGAACAGCAAAAGAATTAAGGAAGGAGAAGTTATT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1887121 310 -   3067355 TCATTTACCAT-CTGATAGCAATTTGCTCGTAATTTCATAGTGA-CT-TTAAGTGTTAGGCAG-----TT---ACATGCATTCTCTCATCTTCTC-ACTTAATTGTACATGGTGGAGGGTAGGGGCCATGTTCAGTTTCCCTTTATTCTTTGAACCTATCTCTT-CTAGGCCTTGTCTGCTCTTGAGGAAGATGGTCTTCTTTGCATGTT--GGCCTTTATCAG------ACAAAACAACAGC----ACCTGAAGACACACAGGCATGTGCACGTCCGTGCATGC---------------------------ACAA--ACATA---CTTCCTGGAACAGCAAAATAATTAAAGAAGGAGAAGTTATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171408979 305 - 171630274 TCATTTACCAT-CTGATAGCTATTTGCTCTTAATTTCACAGTGC-CT--TAAGTGTGAGGCAC-----TT---ACATGCATTCTCTCATCTTCTC-ACTTAATTATACATGGTGGAGGGTAGAGGCCATGCTCAGTTTCCCTTTGTTCTTTGGACCTATCTCTT-CTAGGCCTTGTCTGCTCTTCGGGAAGATGGTCTTCTTTGCATGTT--GGCCTGTATCGG------AAAAAACAAGAGC----ACCTAAAGGCACACAGGCATGTGCACATGCATGCACGC---------------------------AGAT--ACACA---CTTCCTGGAACAGCAAAACAATTAAGG----AGGAGTCATT
i calJac3.chr4             C 0 I 308
s saiBol1.JH378348            235759 288 -    375362 TCATTTACCAT-CTGATAGCTATTTGCTCTTAATTTCATAGTGC-CT--TAAGTGTGAGGCAC-----TT---ACATGCATTCTCT-----------CTTAATTATACATGGTGGACGGTAGAGGCCATGCTCAG--TCCCTTTGTTCTTTGAACCTATCTCTT-CTAAGCCTTGTCTGCTCTTGGGGAAGATGGTCTTTT---CATGTT--GGCCTGTATCAG------AAAAAACAAGAGC----ACCTAAAGACACACAGGCATGTACACATGCATGCACGC-----------------------------AC--ACACA---CTTCCTGGAACAGCAAAAGAATTGAGG----AGGAGTTATT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      234653 303 -    373274 TCATTTACCAT-CTGATAGCTATTTGCTCTTAA-TTCATAGTGC-CT--TAAGTGTGAGGCAC-----TT---ACATGCATTCTCTCATCTTCTC-ACTTAATTATACATGGTGGAGGGTAGAGGCCATGCTCAGTTTCCCTTTGTTATTTGAACCTATCTCTT-CTAGGCCTTGTCTGCTCTTGGGGAAGATGGTCTTTG---CATGTT--GGCCCGTATCAG------AAAAAACAAGAGC----ACCTAAAGACACACTGGCATGTGCACATGCATGCACGT-------------------------ACACAC--ACACA---CTTCCTGGAACAGCAAAAGAATTAAGG----AGGAGTTATT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      168092 309 -    285216 TCATTTACCAT-CTGATAGCTATTTGCTCTTAATTTCATAGTGC-CT--TAAGTGTGAGGCACTTACATT---ACATGCATTCTCTCATCTT-----CTCAATTATACATGGTGGAGGGTAGAGGCCATGCTCAGTTTCCCTTTGTTCTTTGAACCTATCTCTT-CTAGGCCTTGTCTGCTCTTGGGGAAGATGGTCTTCTTTGCATGTT--GGCCTGTATC-G------AAAAAACAAGAGCACCTACCTAAAAACACACAGGCATGTGCACATGCATGCACAC---------------------------ACAC--ACACA---CTTCCTGGAACAGCAAAAGAATTAAGG----AGAAGTTATT
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      972481 304 -   3516910 TCCTTTACCAT-CTGACAGCTATTTGCT--TACTTTCATAGTGT--------------------------------TGAATTCTCTCA---TCTC-ACTTAACTGTACATGGTGGAGAGGAGGGATCATGTTCAGTTTCCCTTTATTCTCTGAAAC--TCTCTT-CTAGGCCTTGTCTGCTCTTGGGGAAGATGCTCTTCTCTGCATGTC--TGCCCGTATGAGA-----AAAAAACAAGAGT----AGCTGAAGACACATA--TGTGTGCACATGCGTGC-TGACTcacacacacatacacacacacacacacac--acacaT--TTTCCTGGGGCAACAAAACAATTAAGGA---AGGAGTTGTT
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1542501 280 -   2232465 TCATTTG-CAT-CTG-----------------CTTTCATAGTGTCTT-TTAAGTGTTAATCAGTTA--TC---ACCTGAATTCTCTCATCTTCTC-ACTTATTTGTACATGATGGAGAGGCAGGGCCACGTTCAGTTTCTCTTTATTCTCTGACCT-GTCTCTT-CTGAACCTTATCTATTCTTAGGGAAGATGCTCTTCTCTGCATAT------GCATATGAGAATGAGAAAATACAAGAGC----AGTTGAAAATACACC--TTTGTGCA----GGCAC-TGA---------------------------------ACACGT--TTTCCTGGGGGAACAGAACAATT----A---GGGATTTGTT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25902018 242 +  26524999 TTATTTCCTGTAATGACAGCGATTGGCTTTCAGTGTCATGGCAC-TTGTTACTTGTTAGTCAC-----TTCTCCCAAGTATT-TCTCATCTTCCC-----AATTGTGCACATCCTAGGAGCAGGGCCATGTTCAGTTTCCTTTTATTCTCTG-------------------------TCTGGTTGGGGAAGATGCTCCTATCTTCCCGCCA-GGCCACTATCAG------------------C----AGCTGAAAACACACA--------------------------------------------------GTAA----------TATCCTAGGGCAGTAAAGT--CTGAAGA---ATGAGTTGTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             56278 289 -    302817 TTGTTTACCGT--TGACACCTAT-------TAATTTCACCGTCC-GT-TTGAGTGTGAGGCAA-----TTATCACGTGTACTGTCTCATCTGCTCAACTGTACTGGACATTGTGGAGGGCATAG-TCACGTTTAGCTTCTCC---TCTTCTGATTTTGTCTCTT-CTAGGCTTCGAATGCCCTTAGAGAAGATGCTCTTCTCTGCATGGTAGGGTCCGCATCAG------AAAAAACAAGAGC----TGCTGCAGAGAGACA------------------CCCTC---------------------------ACTC--ACACAGGATTCCCCTGAGCAGCGAATGACTTGAGGAACAAGGGAATGCT
i dasNov3.JH561790         C 0 C 0

a score=369430.000000
s hg38.chr6_GL000254v2_alt    167475 29 +   4827813 GAAACCGTAATGTATAATTAACAATTG-CA
s panTro5.chr6              29154972 29 + 175400573 GAAACCGTAATGTATAATTAACAATTG-CA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389140 29 + 173848474 GAAACCGTAATGTATAATTAACAATTG-CA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5189625 29 +   6154872 GAAACCATAATGTATAATTAACAATTG-CA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74186932 29 + 122973662 GAAACCCTAATGTATAATTAACAATTG-CA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29365424 29 + 172585720 GAAACCCTAATGTATAATTAAGAATTG-CA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29026309 29 - 170955103 GAAACCCTAATGTATAATTAAGAATTG-CA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2006711 29 -   2996164 GAAACCCTAATGTATAATTAAGAATTG-CA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1878321 29 -   2157725 GAAACCCTAATGTATAATTAAGAATTG-CA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28323562 29 -  71996105 GAAACCCTAATGTATAATTAAGAATTG-CA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2003031 29 +   2316924 GAAACCCTAATGTATAATTAAGAATTG-CA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1887431 29 -   3067355 GAAACCGTAATGTATAATTAAGAATTG-CA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171409592 29 - 171630274 gAAACCCTAATGTATAATTAACAATTG-CA
i calJac3.chr4             I 308 C 0
s saiBol1.JH378348            236047 29 -    375362 GAAACCTTAATGTATAATTAACAATTG-CA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      234956 29 -    373274 GAAATCCTAATGTATAATTAACAATTG-CA
i cebCap1.NW_016108108v1   C 0 I 1665
s aotNan1.NW_018494050v1      168401 29 -    285216 GAAACCGTAATGTATAATTAACAATTG-CA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      972785 30 -   3516910 GAAGCCCTAATATGTAATTAACAACTTGCG
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1542781 29 -   2232465 AAAGTCCTGATGTATAATTAACCACTT-CT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25902260 29 +  26524999 GAAGTCTTAGTGTGTAATTAACAGCTT-CA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             56567 25 -    302817 GAAGGCCTGATG-AAAATTAAC---TT-CA
i dasNov3.JH561790         C 0 C 0

a score=1624508.000000
s hg38.chr6_GL000254v2_alt    167504 164 +   4827813 GATGTTCTGAGGAAAG----AG------AGGGGAGTCAAAGGAATCGGAGT--GGGCCCCATAT--GTC--TTTAGTGACTCAATTCC-TGACTCGG----TGAACTCAAAAGTTGCTTACCTTTCTGCAGATGAGT-AAACTT--AGAATCAC----------------AAG-----------TT-CATTTAATCC---CATTCAAAATGGCAGGCTT
s panTro5.chr6              29155001 166 + 175400573 GATGTTCTGAGGAAAG----AG------AGGGGAGTCAAAGGAATCGGAGT--GGGCCCCATATCTGTC--TTTAGTGACTCAATTCC-TGACTCGG----TGAACTCAAAAGTTGCTTACCTTTCTGCAGATGAGT-AAACTT--AGAATCAC----------------AAG-----------TT-CATTTAATCC---CATTCAAAATGGCAGGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389169 166 + 173848474 GATGTTCTGAGGAAAG----AG------AGGGGAGTCAAAGGAATCGGAGT--GGGCCCCATATCTGTC--TTTAGTGACTCAATTCC-TGACTCGG----TGAACTCAAAAGTTGCTTACCTTTCTGCAGATGAGT-AAACTT--AGAATCAC----------------AAG-----------TT-CATTTAATCC---CATTCAAAATGGCAGGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5189654 166 +   6154872 GATGTTCTGAGGAAAG----AG------AGGAGAGTCAAAGGAATCGGAGT--GGGCCCCATATCTGTC--TTTAGTGACTCAATTCC-TGACTCGG----TGAACTCAAAAGTTGCTTACCTTTCTGCAGACGAGT-AAACTT--AGAATCAC----------------AAG-----------TT-CATTTAATCC---CATTCAAAATGGCAGGCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74186961 165 + 122973662 GATGTTCTGAGGAATG----AG------AGGGGAGTCAAAGGAATCGGAGA--GGGCCCCATATCTGCC--TTTAGTGACTCAATTCC-TGACTCGG----TGAACTCAAAACTTAA--ACCTTTCTGCAGATGAGTAAAACTT--AGAATCAG----------------AAG-----------TT-CATTTAATCC---CATTCAAACTGGCAGGCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29365453 170 + 172585720 GATGTTCTGAGGAA------AG------AGGGGAGACAAAAGAATCACAGTG-GGGCCCCATATCTGCC--TTTAGTGACTCAGTTTAGTGACTCAGTTCTTGAACTCAAAAGCTGCTTACCTTTCTGCAGATGAGT-AAACTT--AGAATCAC----------------AAG-----------TT-CATTTAATTC---CATTCAAAATGGCAGGCTt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29026338 170 - 170955103 GATGTTCTGAGGAA------AG------AGGGGAGACAAAAGAATCACAGTG-GGGCCCCATGTCTGCC--TTTAGTGACTCAGTTTAGTGACTCAGTTCTTGAACTCAAAAGCTGCTTACCTTTCTGCAGATGAGT-AAACTT--AGAATCAC----------------AAG-----------TT-CATTTAATTC---CATTCAAAATGGCAGGCTt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2006740 170 -   2996164 GATGTTCTGAGGAA------AG------AGGAGAGACAAAAGAATCACAGTG-GGGCCCCATATCTGCC--TTTAGTGACTCAGTTTAGTGACTCAGTTCTTGAACTCAAAAGCTGCTTACCTTTCTGCAGATGAGT-AAACTT--AGAATCAC----------------AAG-----------TT-CATTTAATTC---CATTCAAAATGGCAGGCTt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1878350 170 -   2157725 GATGTTCTGAGGAA------AG------AGGGGAGACAAAAGAATCACAGTG-GGGCTCCATATCTGCC--CTTAGTGACTCAGTTTAGTGACTCAGTTCTTGAACTCAAAAGCTGCTTACCTTTCTGCAGATGAGT-AAACTT--AGAATCAC----------------AAG-----------TT-CATTTAATTC---CATTCAAAATGGCAGGCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28323591 170 -  71996105 GATGTTCTGAGGAA------AG------AGGGGAGACAAAAGAATCACAGTG-GGGCCCCATATCTGCC--TTTAGTGACTCAGTTTAGTGACTCAGTTCTTGAACTCAAAAGCTGCTTACCTTTCTGCAGATGAGT-AAACTT--AGAATCAC----------------AAG-----------TT-CATTTAATTC---CATTCAAAATGGCAGGCTt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2003060 170 +   2316924 GATGTTCTGAGGAA------AG------AGGGGAGACAAAAGAATCACAGTG-GGGCCCCATATCTGCC--TTTAGTGACTCAGTTTAGTGACTCAGTGCTTGAACTCAAAAGCTGCTTACCTTTCTGCATATGAGT-AAACTT--AGAATCAC----------------AAG-----------TT-TATTTAATTC---CATTCAAAATGGCAGGCTt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1887460 169 -   3067355 GATGTTCTGAGGAA------AG------AGGGGAGACAAAAGAATCACAGT--GGGCCCCATATCTGCC--TTTAGTGACTCAGTTTAGTGACTCAGTTCTTGAACTCAAAAGCTGCTTACCTTTCTGCAGATGAGT-AAACTT--AGAATCAC----------------AAG-----------TT-CATTTAATTC---CATTCAAAATGGCAGGCTt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171409621 164 - 171630274 GATGTTTTGAGGAA------AG------AGAGGAACTAGAAGAATCAGGGT--GCGCCCCGTATCTTCC--TTTAGTGATTCAATTCATGGACTTA-----TGAACTCAAAAGTGGCTTACCTTTCTGCAGACGAGT-AGACTT--AAAATCAC----------------AAG-----------TT-CATTTAACCC---GATTCAAAATGGCAGGCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            236076 164 -    375362 GATGTTCTGAGGAA------AG------AGAGGAACTACAAGAATCAGGGT--GGGCCCTGTATCTGCC--TGTAGTGATTCAATTTGTTGACTTA-----TGAACTCAAAAGTGGCTTACCTTTCTGCAGATGAGT-AAACTT--AAAATCAC----------------AAG-----------TT-CATTTAACCC---CATTCAAAATAGCAGGCTT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      168430 163 -    285216 GATGTTCTGAGGAA------AG------AGAGGAACTAGAAGAATGGGGGT--GGGCCTC-CATCTGCC--TTTAGTGATTCAATTCATTGACTTA-----TGAACTCAAAAGTGGCTTACCCTTCTGCAGATGAGT-AAACTT--AAAATCAC----------------AAG-----------TT-CATTTAACCC---CATTCAAAATGGCAGGCTT
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      972815 175 -   3516910 GATGTTCTGAGGAA------AGAAACAGAGAGGAACCAAAAGAATC---CTACTGGGCCCATATCTGCTTATTTAGTGACCCAACTAC-TGATTCAA----TGAACCCAAAGGTTGCTTACCTTTCTGCAGATGAGT-AAATTT--AGAATCATTTAC------------AAA-----------TT-CATTTAACTT---CATTCAAAATGGCAGGCGC
i proCoq1.NW_012147953v1   C 0 I 3
s otoGar3.GL873742           1542810 198 -   2232465 CATATTCTGAAAAA------AGGAAC--AGAGGAGCCAAAAGAGCCAAACTGCTGGGTCCAT---TATCTATTTAGTGACCCAATTGC-TGACTCAA----TGAATGCAAAGACTGATTATCTTTCTGCAGATGAGC-AAACTTTAAGAATCATTTACCTTCTTGAAGTTAAACGACCTACCTGTT-CGTTTAACTT---CATTAAAAATGGAAGGCTT
i otoGar3.GL873742         C 0 I 1004
s canFam3.chr35             25902289 175 +  26524999 GATGTTCTGAGGAAAGAACCAG------ACAGGAGCCAGAAGGATGGTACC--AGGCCCCATGTTTGCC--TTAAGCGGCCCAAATCC-TCATTCTA----CGAATTCAGATGTTGCTTATCTTTCTGCAG--GAGT-AAATTT--AGAATCATTTAC------------AAC-----------TT-CATTTGGGATGAGGATCCCAAATGGTAGGGTT
i canFam3.chr35            C 0 I 5
s dasNov3.JH561790             56592 162 -    302817 AATATTCCGAAGGAAAAACCAG------AGAGAGGCCAAAAAGACTCCCAC--CAAGCCCAT---------GTTAGGGGCCCAAACCC-TGTTTCAG----TTAATTTGAAGACTGCTTCCCTTTCTGCAGATGAGA-AATTTT--AAAATGATTTAC------------AAG-----------TTGTGTTTAATTC---TATTCAAAA------ACTT
i dasNov3.JH561790         C 0 C 0
e cebCap1.NW_016108108v1      234985 1665 -    373274 I

a score=128896.000000
s hg38.chr6_GL000254v2_alt    167668 14 +   4827813 TTAAAACTAAAAAT
s panTro5.chr6              29155167 14 + 175400573 TTAAAACTAAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389335 14 + 173848474 TTAAAACTAAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5189820 14 +   6154872 TTAAAACTAAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74187126 14 + 122973662 TTAAAACTAAAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29365623 14 + 172585720 ttaaaactaaaaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29026508 14 - 170955103 ttaaaactaaaaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2006910 14 -   2996164 ttaaaactaaaaat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1878520 14 -   2157725 TTAAAACTAAAAAT
i cerAty1.NW_012001495v1   C 0 I 341
s chlSab2.chr17             28323761 14 -  71996105 ttaaaactaaaaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2003230 14 +   2316924 ttaaaactaaaaat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1887629 14 -   3067355 ttaaaactaaaaat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171409785 10 - 171630274 TTAAAACTAa----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            236240 10 -    375362 TTAAAACTAa----
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      168593 10 -    285216 TTAAAACTAa----
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      972993 14 -   3516910 TTTAAATTAAAAAT
i proCoq1.NW_012147953v1   I 3 C 0
s canFam3.chr35             25902469 14 +  26524999 TTTTAGttaaaaat
i canFam3.chr35            I 5 C 0
s dasNov3.JH561790             56754 13 -    302817 -TTTAATTAAAAAT
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1543008 1004 -   2232465 I
e cebCap1.NW_016108108v1      234985 1665 -    373274 I

a score=63686.000000
s hg38.chr6_GL000254v2_alt    167682 10 +   4827813 ATAAATAAAT
s panTro5.chr6              29155181 10 + 175400573 ATAAATAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389349 10 + 173848474 ATAAATAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5189834 10 +   6154872 ATAAATAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74187140 10 + 122973662 ATAAATAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29365637 10 + 172585720 tgaaataaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29026522 10 - 170955103 tgaaataaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2006924 10 -   2996164 tgaaataaga
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28323775 10 -  71996105 ttaaataaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2003244 10 +   2316924 ttaaataaga
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1887643 10 -   3067355 ttaaataaga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171409795  8 - 171630274 --aaataaat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            236250  8 -    375362 --aaataaat
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      168603  8 -    285216 --aaataaat
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      973007 10 -   3516910 TTAAATAAAT
i proCoq1.NW_012147953v1   C 0 C 0
s canFam3.chr35             25902483 10 +  26524999 ttaaataatt
i canFam3.chr35            C 0 I 209
s dasNov3.JH561790             56767  9 -    302817 -TTAATCAAT
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1543008 1004 -   2232465 I
e cebCap1.NW_016108108v1      234985 1665 -    373274 I
e cerAty1.NW_012001495v1     1878534 341 -   2157725 I

a score=80391.000000
s hg38.chr6_GL000254v2_alt    167692 10 +   4827813 ACCTATAAAC
s panTro5.chr6              29155191 10 + 175400573 ACCTATAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389359 10 + 173848474 ACCTATAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5189844 10 +   6154872 ACCTATAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74187150 10 + 122973662 ACCTATAAAC
i nomLeu3.chr1a            C 0 I 1376
s rheMac8.chr4              29365647 10 + 172585720 aactataaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29026532 10 - 170955103 aactataaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2006934 10 -   2996164 aactataaac
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28323785 10 -  71996105 aactataaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2003254 10 +   2316924 aactataaac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1887653 10 -   3067355 aactataaac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171409803 10 - 171630274 accgattaac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            236258 10 -    375362 acctattaac
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      168611 10 -    285216 acctattaac
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      973017 10 -   3516910 ACCTACAAAC
i proCoq1.NW_012147953v1   C 0 C 0
s canFam3.chr35             25902702 10 +  26524999 aCCTATGAAC
i canFam3.chr35            I 209 C 0
s dasNov3.JH561790             56776  9 -    302817 GCCCATGTA-
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1543008 1004 -   2232465 I
e cebCap1.NW_016108108v1      234985 1665 -    373274 I
e cerAty1.NW_012001495v1     1878534 341 -   2157725 I

a score=160900.000000
s hg38.chr6_GL000254v2_alt    167702 18 +   4827813 ACACCACCCACAAGAACT
s panTro5.chr6              29155201 18 + 175400573 ACACCACCCACAAGAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389369 18 + 173848474 ACACCACCCACAAGAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5189854 18 +   6154872 ACACCACCCACAAGAACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74188536 18 + 122973662 ACACCACCCACAAGAACT
i nomLeu3.chr1a            I 1376 C 0
s rheMac8.chr4              29365657 18 + 172585720 acaccacccacaagaact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29026542 18 - 170955103 acaccacccacaagaact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2006944 18 -   2996164 acaccacccacaagaact
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28323795 18 -  71996105 acatcacccacaagaact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2003264 18 +   2316924 acaccacccacaagaact
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1887663 18 -   3067355 acaccacctacaagaact
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171409813 18 - 171630274 acaccaggcacatgaact
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            236268 18 -    375362 acaccacccacatgaact
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      168621 18 -    285216 acaccacccacatgaact
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      973027 14 -   3516910 CCACCACCCATACC----
i proCoq1.NW_012147953v1   C 0 C 0
s canFam3.chr35             25902712 11 +  26524999 -------CCACAAGAACC
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             56785 16 -    302817 --ACCCACCACAAGAACC
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1543008 1004 -   2232465 I
e cebCap1.NW_016108108v1      234985 1665 -    373274 I
e cerAty1.NW_012001495v1     1878534 341 -   2157725 I

a score=13923.000000
s hg38.chr6_GL000254v2_alt    167720 1 +   4827813 A
s panTro5.chr6              29155219 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389387 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5189872 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74188554 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29365675 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29026560 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2006962 1 -   2996164 a
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28323813 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2003282 1 +   2316924 a
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1887681 1 -   3067355 a
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171409831 1 - 171630274 a
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            236286 1 -    375362 a
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      168639 1 -    285216 a
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      973041 1 -   3516910 A
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1544012 1 -   2232465 A
i otoGar3.GL873742         I 1004 C 0
s canFam3.chr35             25902723 1 +  26524999 A
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             56801 1 -    302817 A
i dasNov3.JH561790         C 0 C 0
e cebCap1.NW_016108108v1      234985 1665 -    373274 I
e cerAty1.NW_012001495v1     1878534 341 -   2157725 I

a score=153765.000000
s hg38.chr6_GL000254v2_alt    167721 11 +   4827813 GAAGATAACCA
s panTro5.chr6              29155220 11 + 175400573 GAAGATAACCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389388 11 + 173848474 GAAGATAACCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5189873 11 +   6154872 GAAGATAACCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74188555 11 + 122973662 GAAGATAACCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29365676 11 + 172585720 gaagataacca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29026561 11 - 170955103 gaagataacca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2006963 11 -   2996164 gaagataacca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1878875 11 -   2157725 GAAGATAACCA
i cerAty1.NW_012001495v1   I 341 C 0
s chlSab2.chr17             28323814 11 -  71996105 gaagataacca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2003283 11 +   2316924 gaagataacca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1887682 11 -   3067355 gaagataacca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171409832 11 - 171630274 gaagataacca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            236287 11 -    375362 gaagacaacca
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      168640 11 -    285216 gaagataacca
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      973042 11 -   3516910 GAAGATAACCA
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1544013 11 -   2232465 AAGAATAATCT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25902724 11 +  26524999 GAAGATAACCA
i canFam3.chr35            C 0 I 755
s dasNov3.JH561790             56802 11 -    302817 GGAGGTAACAA
i dasNov3.JH561790         C 0 C 0
e cebCap1.NW_016108108v1      234985 1665 -    373274 I

a score=79334.000000
s hg38.chr6_GL000254v2_alt    167732 7 +   4827813 ATA-ACAC
s panTro5.chr6              29155231 7 + 175400573 ATA-ACAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389399 7 + 173848474 ATA-ACAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5189884 7 +   6154872 ATA-ACAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74188566 7 + 122973662 ATA-ACAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29365687 7 + 172585720 ata-acac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29026572 7 - 170955103 ata-acac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2006974 7 -   2996164 ata-acac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1878886 7 -   2157725 ATA-ACAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28323825 7 -  71996105 ata-acac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2003294 7 +   2316924 ata-acac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1887693 7 -   3067355 ata-acac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171409843 7 - 171630274 gta-acac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            236298 7 -    375362 gta-acac
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      168651 7 -    285216 gta-acac
i aotNan1.NW_018494050v1   C 0 I 639
s proCoq1.NW_012147953v1      973053 7 -   3516910 GTA-ACAC
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1544024 8 -   2232465 ATATATAT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25903490 7 +  26524999 ATA-ATAG
i canFam3.chr35            I 755 C 0
s dasNov3.JH561790             56813 7 -    302817 CTC-ACAC
i dasNov3.JH561790         C 0 I 571
e cebCap1.NW_016108108v1      234985 1665 -    373274 I

a score=19443.000000
s hg38.chr6_GL000254v2_alt    167739 2 +   4827813 AT
s panTro5.chr6              29155238 2 + 175400573 AT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389406 2 + 173848474 AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5189891 2 +   6154872 AT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74188573 2 + 122973662 AT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29365694 2 + 172585720 at
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29026579 2 - 170955103 at
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2006981 2 -   2996164 at
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1878893 2 -   2157725 AT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28323832 2 -  71996105 at
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2003301 2 +   2316924 at
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1887700 2 -   3067355 at
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171409850 2 - 171630274 ct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            236305 2 -    375362 ct
i saiBol1.JH378348         C 0 C 0
s proCoq1.NW_012147953v1      973060 2 -   3516910 AT
i proCoq1.NW_012147953v1   C 0 I 737
s otoGar3.GL873742           1544032 2 -   2232465 AT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25903497 2 +  26524999 AT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             57391 2 -    302817 gt
i dasNov3.JH561790         I 571 C 0
e aotNan1.NW_018494050v1      168658 639 -    285216 I
e cebCap1.NW_016108108v1      234985 1665 -    373274 I

a score=8323.000000
s hg38.chr6_GL000254v2_alt    167741 1 +   4827813 G
s panTro5.chr6              29155240 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389408 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5189893 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74188575 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29365696 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29026581 1 - 170955103 g
i macFas5.chr4             C 0 I 615
s macNem1.NW_012011356v1     2006983 1 -   2996164 g
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1878895 1 -   2157725 G
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28323834 1 -  71996105 g
i chlSab2.chr17            C 0 I 616
s manLeu1.NW_012104165v1     2003303 1 +   2316924 g
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1887702 1 -   3067355 g
i colAng1.NW_012115566v1   C 0 I 614
s calJac3.chr4             171409852 1 - 171630274 g
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            236307 1 -    375362 g
i saiBol1.JH378348         C 0 C 0
s canFam3.chr35             25903499 1 +  26524999 A
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             57393 1 -    302817 a
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      973062 737 -   3516910 I
e otoGar3.GL873742           1544034 0 -   2232465 C
e aotNan1.NW_018494050v1      168658 639 -    285216 I
e cebCap1.NW_016108108v1      234985 1665 -    373274 I

a score=10424.000000
s hg38.chr6_GL000254v2_alt    167742 1 +   4827813 T
s panTro5.chr6              29155241 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389409 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5189894 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74188576 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29365697 1 + 172585720 t
i rheMac8.chr4             C 0 I 635
s macFas5.chr4              29027197 1 - 170955103 T
i macFas5.chr4             I 615 C 0
s macNem1.NW_012011356v1     2006984 1 -   2996164 t
i macNem1.NW_012011356v1   C 0 I 635
s cerAty1.NW_012001495v1     1878896 1 -   2157725 T
i cerAty1.NW_012001495v1   C 0 I 632
s chlSab2.chr17             28324451 1 -  71996105 T
i chlSab2.chr17            I 616 C 0
s manLeu1.NW_012104165v1     2003304 1 +   2316924 t
i manLeu1.NW_012104165v1   C 0 I 627
s colAng1.NW_012115566v1     1888317 1 -   3067355 T
i colAng1.NW_012115566v1   I 614 C 0
s calJac3.chr4             171409853 1 - 171630274 t
i calJac3.chr4             C 0 I 579
s saiBol1.JH378348            236308 1 -    375362 t
i saiBol1.JH378348         C 0 I 1145
s otoGar3.GL873742           1544034 1 -   2232465 T
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25903500 1 +  26524999 C
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             57394 1 -    302817 t
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      973062 737 -   3516910 I
e aotNan1.NW_018494050v1      168658 639 -    285216 I
e cebCap1.NW_016108108v1      234985 1665 -    373274 I

a score=46676.000000
s hg38.chr6_GL000254v2_alt    167743 16 +   4827813 TGT-GGGGCAGGACCTG---
s panTro5.chr6              29155242 16 + 175400573 TGT-GGGGCAGGACCTG---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389410 16 + 173848474 TGT-GGGGCAGGACCTG---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5189895 16 +   6154872 TGT-GGGGCAGGACCTG---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74188577 17 + 122973662 TGTGGGGGCAGGACCTG---
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29027198 16 - 170955103 TGT-GGGGCAGGATCTA---
i macFas5.chr4             C 0 I 4
s chlSab2.chr17             28324452 16 -  71996105 TGT-GGGGCAGGATCTG---
i chlSab2.chr17            C 0 I 4
s colAng1.NW_012115566v1     1888318 16 -   3067355 TGT-GGGGCAGGATCTG---
i colAng1.NW_012115566v1   C 0 I 4
s otoGar3.GL873742           1544035 16 -   2232465 TCA-GGGGCAGGATTTG---
i otoGar3.GL873742         C 0 I 4
s canFam3.chr35             25903501 16 +  26524999 TGA-GGGGAAGGATAAG---
i canFam3.chr35            C 0 I 4
s dasNov3.JH561790             57395 19 -    302817 cgt-gggacaggtaagaagt
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      973062 737 -   3516910 I
e saiBol1.JH378348            236309 1145 -    375362 I
e aotNan1.NW_018494050v1      168658 639 -    285216 I
e cebCap1.NW_016108108v1      234985 1665 -    373274 I
e calJac3.chr4             171409854 579 - 171630274 I
e manLeu1.NW_012104165v1     2003305 627 +   2316924 I
e cerAty1.NW_012001495v1     1878897 632 -   2157725 I
e macNem1.NW_012011356v1     2006985 635 -   2996164 I
e rheMac8.chr4              29365698 635 + 172585720 I

a score=7710.000000
s hg38.chr6_GL000254v2_alt    167759 1 +   4827813 A
s panTro5.chr6              29155258 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389426 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5189911 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74188594 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29366333 1 + 172585720 A
i rheMac8.chr4             I 635 C 0
s macFas5.chr4              29027218 1 - 170955103 A
i macFas5.chr4             I 4 C 0
s macNem1.NW_012011356v1     2007620 1 -   2996164 A
i macNem1.NW_012011356v1   I 635 C 0
s cerAty1.NW_012001495v1     1879529 1 -   2157725 A
i cerAty1.NW_012001495v1   I 632 C 0
s chlSab2.chr17             28324472 1 -  71996105 A
i chlSab2.chr17            I 4 C 0
s manLeu1.NW_012104165v1     2003932 1 +   2316924 A
i manLeu1.NW_012104165v1   I 627 C 0
s colAng1.NW_012115566v1     1888338 1 -   3067355 A
i colAng1.NW_012115566v1   I 4 C 0
s proCoq1.NW_012147953v1      973799 1 -   3516910 A
i proCoq1.NW_012147953v1   I 737 C 0
s otoGar3.GL873742           1544055 1 -   2232465 T
i otoGar3.GL873742         I 4 C 0
s canFam3.chr35             25903521 1 +  26524999 A
i canFam3.chr35            I 4 C 0
s dasNov3.JH561790             57414 1 -    302817 a
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            236309 1145 -    375362 I
e aotNan1.NW_018494050v1      168658 639 -    285216 I
e cebCap1.NW_016108108v1      234985 1665 -    373274 I
e calJac3.chr4             171409854 579 - 171630274 I

a score=630950.000000
s hg38.chr6_GL000254v2_alt    167760 59 +   4827813 TGTGGTCATGTGTTCCatctcagtttgaatcctggctctgctgcttcctagctgtgtac
s panTro5.chr6              29155259 59 + 175400573 TGTGGTCATGTGTTCCatctcagtttgaatcctggctctgctgcttcctagctgtgtac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389427 59 + 173848474 TGTGGTCATGTGTTCCatctcagtttgaatcctggctctgctgcttcctagctgtgtac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5189912 59 +   6154872 TGTGGTCACGTGTTCCatctcagtttgaatcctggctctgctgcttcctagctgtgtac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74188595 59 + 122973662 TGTGGTCATGTGTTCCatctcagtttgaatcctgcctctgctgcttcctagctgtgtac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29366334 59 + 172585720 TGTGATCATGTGTTCCATCCCAgtttgaatcctggctctgctgcttcctagctgtatac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29027219 59 - 170955103 TGTGATCATGTGTTCCATCCCAgtttgaatcctggctctgctgcttcctagctgtatac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2007621 59 -   2996164 TGTGATCATGTGTTCCATCCCAgtttgaatcctggctctgctgcttcctagctgtatac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1879530 59 -   2157725 TGTGATCATGTGTTCCATCCCAgtttgaatcctggctctgctgcttcctagctgtatac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28324473 59 -  71996105 TGTGATCATGTGTTCCATCCCAgtttgaatcctggctctgctgcttcctagctgtatac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2003933 59 +   2316924 TGTGATCATGTGTTCCATCCCAgtttgaatcctggctctgctgcttcctagctgtatac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1888339 59 -   3067355 TGTGGTCATGTGTTCCatctcagtttcaatcctggctctgctgcttcctacctgtatac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171410433 52 - 171630274 tgcggtcacg-------tctcagtttgaatcctggctctgctgcttcctagctgtgtat
i calJac3.chr4             I 579 C 0
s proCoq1.NW_012147953v1      973800 59 -   3516910 TGTGGTCATGTGTTCCATctcagtttgaatcctggctttgctgcttcctagctgtgcac
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1544056 59 -   2232465 TGTGGTCATGTGTTCCATctcagtttgaatcctggctctgctgcttcctagctgtgcac
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25903522 59 +  26524999 TGTGGTCAAGTGTTCCatcttagtttgaatcctggttctgctgctccctagctgtgcac
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             57415 45 -    302817 cgtggccgtg-------------tctgaaccctggctctgctgct-ccgagctgtgtgc
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            236309 1145 -    375362 I
e aotNan1.NW_018494050v1      168658 639 -    285216 I
e cebCap1.NW_016108108v1      234985 1665 -    373274 I

a score=1109058.000000
s hg38.chr6_GL000254v2_alt    167819 139 +   4827813 cttggataagtcatttacc--ctctctg--ctgcag----ttt----atctgtaaagt-aagacaacagtacacacttgataaaattatcatgagcattaaggaagctactgtgcataaaactcttcatatgatgtgccaagcacTGCTCTA--
s panTro5.chr6              29155318 138 + 175400573 cttggataagtcatttacc--ctctctg--ctgcag----ttt----atctgtaaagt-aagacaacagtacacacttgataaaattatcatgagcattaaagaagctactgtgcataaaactcttCATATGATGTGA-GAGCACTGCTCTA--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389486 138 + 173848474 cttggataagtcatttacc--ctctctg--ctgcag----ttt----atctgtaaagt-aagacaacagtacacacttgataaaattatcatgagcattaaagaagctactgtgcataaaactcttCATATGATGTGA-GAGCACTGCTCTA--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5189971 139 +   6154872 cttggataagtcatttacc--ctctctg--ctgcag----ttt----atctgtaaagt-aagacaacagtacacacttgataaaattatcatgagcattaaagaagctactgtgcataaaactcttcatatgatgtgccaagcacTGCTCTA--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74188654 141 + 122973662 cttggataactcatttacc--cactctg--ccgcagtttcttt----atctgtaaaga-cagacaagagtacatacttgataaagttatcatgagcactaaagttgttactgtgcataaagctcttcatatgatgtgccaagcacTGCTC----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29366393 135 + 172585720 cctgggtaagtcatttacc--ccctctg--ctgcag----ttt----atctgtaa-----aggcaatagtacatacttgataaagttatcatgagcattaagtaagttattgtgcataaagttcttcatatgatgttccaagcacTGCTCta--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29027278 135 - 170955103 cctgggtaagtcatttacc--ccctctg--ctgcag----ttt----atctgtaa-----aggcaatagtacatacttgataaagttatcatgagcattaagtaagttattgtgcataaagttcttcatatgatgttccaagcacTGCTCTA--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2007680 135 -   2996164 cctgggtaagtcatttacc--ccctctg--ctgcaa----ttt----atctgtaa-----aggcaatagtacatacttgataaagttatcatgagcattaagtaagttattgtgcataaagttcttcatatgatgttccaagcacTGCTCTA--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1879589 135 -   2157725 cctgggtaagtcatttacc--ccctctg--ctgcag----ttt----atctgtaa-----aggcaatagtacatacttgataaagttatcatgagcattaagtaagttattgtacataaagctcttcatatgatgttccaagcacTGCTCTA--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28324532 135 -  71996105 cctggataagtcatttacc--ccctctg--ctgcag----ttt----atctgtaa-----aggcaatagtacatacttgataaagttatcatgagcattaagtaagttattgtgcataaagctcttcatatgatgttccaagcacTGCTCta--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2003992 135 +   2316924 cctgggtaagtcatttacc--ccctctg--ctgcag----ttt----atctgtaa-----aggcaatagtacatacttgataaagttatcatgagcattaagtaagttattgtacataaagctcttcatatgatgttccaagcacTGCTCta--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1888398 139 -   3067355 cttggataagtcatttacc--ccctctg--ctgcagtttcttt----atctgtaa-----aggcaacagtatatacttgataaagttatcatgagcattaagtaagttactgtgcataaagctcttCATATGATATTCCAAGCACTGCTCTA--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171410485 133 - 171630274 cttgcataagccatttacc----ctctg--ctgcat----tttcttcatctgtaa-----aggcaacagtacacacctgat--agttatcatgagcattaaatcag-tgctgtgcataaagctcttcatatgctgtgccaagcactgctct---
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1      169297 127 -    285216 cttggataagtcagttacc--ctctctg--ctgcat----ttt----atctgtga-----aggcaatagtacacacttga-----ttatcatgagcattaaataagttgctgtgcataaagctcttcacatggtgtgccaagcacTGCT-----
i aotNan1.NW_018494050v1   I 639 C 0
s proCoq1.NW_012147953v1      973859 145 -   3516910 cttggataagtcatttaccctctctctg--cttcag----tttccttatctgtaaaataagggcaatagtacatacttgataaggttgttacgagcattaaataagttactgtgcataaagctcttcataatatgtgccaagcacTGCT-TA--
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1544115 141 -   2232465 cttggataagtgatttacc--ctctctg--cttcag----tttccttgtctgtaaaataagggcaatagtacatacttgataag---gttatgagcactgaataaattattataaataaagctcttcataatatgtgcGAAGCATTGCTCTA--
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25903581 115 +  26524999 cttgaataagccacttacc--tcctctgtacctctg----tttctgcaactgtaaaat-agtgcaatagtacccactttgtaggcttgt---GAACATTCA-CAAACTACTGTGT--------------------------GCCTTGGTCCA--
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             57460  82 -    302817 -cttggtagttcattt--t--ctctggg--cttcag----tttcctcatctataa----aagaagA---------------------------------------------------------CTCCACACCACGTGGCAAACACTGCTCTCCA
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            236309 1145 -    375362 I
e cebCap1.NW_016108108v1      234985 1665 -    373274 I

a score=75486.000000
s hg38.chr6_GL000254v2_alt    167958 8 +   4827813 TGTTTGTT
s panTro5.chr6              29155456 8 + 175400573 TGTTTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389624 8 + 173848474 TGTTTGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5190110 8 +   6154872 TGTTTGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74188795 8 + 122973662 TGTTTGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29366528 8 + 172585720 tgtttgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29027413 8 - 170955103 tgtttgtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2007815 8 -   2996164 tgtttgtt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1879724 8 -   2157725 TGTTTGTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28324667 8 -  71996105 tgcttgtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2004127 8 +   2316924 tgtttgtt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1888537 8 -   3067355 TGTTTGTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171410618 3 - 171630274 -----gtt
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      236650 8 -    373274 TGTTTGTT
i cebCap1.NW_016108108v1   I 1665 C 0
s aotNan1.NW_018494050v1      169424 7 -    285216 -GTTTGTT
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      974004 8 -   3516910 TGTCTTTT
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1544256 8 -   2232465 TGTCTTTT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25903696 5 +  26524999 CGTCT---
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             57542 8 -    302817 AGCATGTT
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            236309 1145 -    375362 I

a score=719533.000000
s hg38.chr6_GL000254v2_alt    167966  81 +   4827813 AGTAGTATTTA----------------------TGTG--------------------------------CCTGTATATATATTACCGTATACATTTAGATCTCAGAATATTCAGCAAAAGCTAATCTAGCCTCAT
s panTro5.chr6              29155464  81 + 175400573 AGTAGTATTTA----------------------TGTA--------------------------------CCTGTATATATATTACCGTATACATTTAGATCTCAGAATATTCAGCAAAAGCTAATCTAGCCTCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389632  81 + 173848474 AGTAGTATTTA----------------------TGTA--------------------------------CCTGTATATATATTACCGTATACATTTAGATCTCAGAATATTCAGCAAAAGCTAATCTAGCCTCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5190118  81 +   6154872 AGTAGTATTTA----------------------TGTA--------------------------------CCTGTATATATATTACCGTATACATTTAGATCTCAGAATATTCAGCAAAAGCTAATCTAGCCTCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74188803  81 + 122973662 AGTAGCATTTA----------------------CATA--------------------------------CCTGTATATATATTACCGTATACATTTAGATCTCAGAATATTCGGCAAAAGCTAATCTAGCCTCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29366536 135 + 172585720 agtagtatttatgtacgtgtgtgtgtgtgtgtatgtgtatatatatatatatatatatatatatatatatatatatatatataACTGCATACATTTAGATCTCAGAATATTCAGCAAAAGCTAACCTAGCCTCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29027421 135 - 170955103 agtagtatttatgtacgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatataACTGCATACATTTAGATCTCAGAATATTCAGCAAAAGCTAACCTAGCCTCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2007823 121 -   2996164 agtagtatttatgtacgtgtgtgtgtgtgtgtgtgtg--------------tgtatatatatatacacacacatatatatataACTGCATACATTTAGATCTCAGAATATTCAGCAAAAGCTAACCTAGCCTCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1879732 103 -   2157725 AGTAGTATGTACCtgtgtgtgtgtgtgtgtgtgtgtg--------------------------------tATATATATATATAACTGCATATATTTAGATCTCAGAATATTCAGCAAAAGCTAACCTAGCCTCAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28324675  93 -  71996105 agtagtattta----------tgtacctgtgtgtgta--------------------------------tatatatatatataactgtatacatttagatCTCAGAATATTCTGCAAAAGCTAACCTAGCCTCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2004135  95 +   2316924 agtagtatgtacc--------tgtgtgtgtgtgtgtg--------------------------------tgtatatatatatAACTGCATACATTTAGATCTCAGAATATTCAGCAAAAGCTAACCTAGCCTCAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1888545  95 -   3067355 AGTAGtattta----------tgtacctgtatatata------------------------------tatatatatatatataaccatatacatttagatCTCAGAATATTCAGCAAAAGCTAACCTAGACTCAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171410621  81 - 171630274 aatagtattta----------------------tGTA--------------------------------CCTGTATTTATATTACCATATACATGTAGATCTCAGAGTATTCAACAAAAGCTAACCTAGCCTCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            237454  81 -    375362 aaTAGTATTTA----------------------TGTA--------------------------------CCTGTATATATATTACCATATACATGTAGATCTCACAGTATTCAGCAAAAGCTAACCTAGCCTCAT
i saiBol1.JH378348         I 1145 C 0
s cebCap1.NW_016108108v1      236658  81 -    373274 AACAGTATTTA----------------------TGTA--------------------------------CCTGTATATATATTACCATATACATGTCGATCTCAGAGTATTCAGCAAAAGCTAACCTAGCCTCAT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      169431  81 -    285216 AATAGTATTTA----------------------TGTA--------------------------------CCTGTATATATATTACCATATTCATGTAGATCTCAGAGTAGTCAGCAAAAGCTAACCTAGCCTCAT
i aotNan1.NW_018494050v1   C 0 I 312
s proCoq1.NW_012147953v1      974012  81 -   3516910 AAAAGTATTTA----------------------TATA--------------------------------CATGTATATAAGTTATCATATGCATTTATATCTCAGAGTATTCAGCAAAAGCTAACCTAGCCTCAT
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1544264  76 -   2232465 AGAAGTATTTA----------------------TATA--------------------------------CATG-----ATGTCATCATATGTACTTATTTCTCAGAGTATTCAGCAAAAGCTAACCTAACCTTAT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25903701  32 +  26524999 --------------------------------------------------------------------------ATATATTTCAC---ATACATACA-----------------------CTA---TATCCTCAT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             57550  23 -    302817 -------------------------------GGTGAA-----------------------------------GTGTACGTATT----------------------------------------------CCCCAC
i dasNov3.JH561790         C 0 C 0

a score=267765.000000
s hg38.chr6_GL000254v2_alt    168047 19 +   4827813 GGAAGCTACTTTCTATAGC-
s panTro5.chr6              29155545 19 + 175400573 GGAAGCTACTTTCTATAGC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389713 19 + 173848474 GGAAGCTACTTTCTATAGC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5190199 19 +   6154872 GGAAGCTACTTTCTATAGC-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74188884 19 + 122973662 GGAAGCTACTTTCTATAGC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29366671 19 + 172585720 GGAAGCTACTTTCTATAGC-
i rheMac8.chr4             C 0 I 325
s macFas5.chr4              29027556 19 - 170955103 GGAAGCTACTTTCTATAGC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2007944 19 -   2996164 GGAAGCTACTTTCTATAGC-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1879835 19 -   2157725 GGAAGCTACTTTCTATAGC-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28324768 19 -  71996105 GGAAGCTACTTTCTATAGC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2004230 19 +   2316924 GGAAGCTACTTTCTATAGC-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1888640 19 -   3067355 GGAAGCTACTTTCTATAGC-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171410702 19 - 171630274 GGAGGCTGCTTTCCATAGC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            237535 19 -    375362 GGCAGCTGCTTTCTATAGC-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      236739 19 -    373274 GGAAGCTGCTTTCTATAGC-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      169824 19 -    285216 GGAAGCTGCTTTCTATAGC-
i aotNan1.NW_018494050v1   I 312 C 0
s proCoq1.NW_012147953v1      974093 19 -   3516910 GGAAGCCCCTTTCTATAGC-
i proCoq1.NW_012147953v1   C 0 I 1
s otoGar3.GL873742           1544340 19 -   2232465 GGAAGCCCTTTTCTATAGC-
i otoGar3.GL873742         C 0 I 1
s canFam3.chr35             25903733 19 +  26524999 GGAAGCCCCTCTTTATAGG-
i canFam3.chr35            C 0 I 1
s dasNov3.JH561790             57573 20 -    302817 GGAAGGCCTCCCCTACAGGA
i dasNov3.JH561790         C 0 C 0

a score=124486.000000
s hg38.chr6_GL000254v2_alt    168066 21 +   4827813 CCTGGTTCTATTATTTCCCTT
s panTro5.chr6              29155564 21 + 175400573 CCTGGTTCTATTATTTCCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389732 21 + 173848474 CCTGGTTCTATTATTTCCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5190218 21 +   6154872 CCTGGTTCTATTATTTCCCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74188903 21 + 122973662 CCTGGTTCTAGTATTTCCCTT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29027575  6 - 170955103 ---------------TTCCTT
i macFas5.chr4             C 0 I 319
s macNem1.NW_012011356v1     2007963  6 -   2996164 ---------------TCCCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1879854  6 -   2157725 ---------------TCCCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28324787  6 -  71996105 ---------------TCCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2004249  6 +   2316924 ---------------TCCCTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1888659  6 -   3067355 ---------------TCCTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171410721 21 - 171630274 CCTGGTTCTATTATTTCCCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            237554 21 -    375362 CCTGGTTCTATTGTTTCCCTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      236758 21 -    373274 CCTGGTTCCATTATTTCCCTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      169843 21 -    285216 CCTGGTTCTATTATTTCCCTT
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      974113 21 -   3516910 CCTGGTTATATTATTTCCCTT
i proCoq1.NW_012147953v1   I 1 C 0
s otoGar3.GL873742           1544360 21 -   2232465 CCTGACTATCTTATTTCCCTT
i otoGar3.GL873742         I 1 C 0
s canFam3.chr35             25903753 21 +  26524999 CCTTCTTACATGATTTCACTT
i canFam3.chr35            I 1 C 0
s dasNov3.JH561790             57593 19 -    302817 CCTGG--CTGCCATTTCCCTT
i dasNov3.JH561790         C 0 C 0
e rheMac8.chr4              29366690 325 + 172585720 I

a score=1169252.000000
s hg38.chr6_GL000254v2_alt    168087 83 +   4827813 AAAACCTGATGAATAAATGAA-GAATTAGGACATGATATCACCAACTCATGAACCTCAGCCATGGAACCCCAATGCCTGGCACA
s panTro5.chr6              29155585 83 + 175400573 AAAACCTGATGAATAAATGAA-GAATTAGGACATGATATCACCAACTCATGAACCTCAGCCATGGAACCCCAATGCCTGGCACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389753 83 + 173848474 AAAACCTGATGAATAAATGAA-GAATTAGGACATGATATCACCAACTCATGAACCTCAGCCATGGAACCCCAATGCCTGGCACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5190239 83 +   6154872 AAAACCTGATGAATAAATGAA-GAATTAGGACATGATATCACCAACTCATGAACCTCAGCCATGGAACCCCAATGCCTGGCACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74188924 83 + 122973662 AAAACCTGATGAATAAATGAA-GAATTAGGACATGGTATCACCAACTCATGAACCTCAGCCATGGAACCCCAATGCCTGGCACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29367015 83 + 172585720 aaaaCCTGATGAGTAAATGAA-GAATTAGGACATGATATCACCAACTCATGAACCTCAGCCATGGAACCCCAATGCCTGGCACA
i rheMac8.chr4             I 325 C 0
s macFas5.chr4              29027900 83 - 170955103 aaaaCCTGATGAGTAAATGAA-GAATTAGGACATGATATCACCAACTCATGAACCTCAGCCATGGAACCCCAATGCCTGGCACA
i macFas5.chr4             I 319 C 0
s macNem1.NW_012011356v1     2007969 83 -   2996164 AAAACCTGATGAGTAAATGAA-GAATTAGGACATGATATCACCAACTCATGAACCTCAGCCATGGAACCCCAATGCCTGGCACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1879860 83 -   2157725 AAAACCTGATGAGTAAATGAA-GAATTAGGACATGATATCACCAACTCATGAACCTCAGCCATGTAACCCCAATGCCTGGCACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28324793 83 -  71996105 AAAGCCTGATGAGTAAATGAA-GAATGAGGACATGATATCACCAACTCATGAACCTCAGCCATGGAACCCCAGTGCCTGGCACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2004255 83 +   2316924 AAAACCTGATGAGTAAATGAA-GAATTAGGACATGATATCACCAACTCATGAACCTCAGCCATGGAACCCCAATGCCTGGCACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1888665 83 -   3067355 AAAACCTGACGAGTGAATGAA-GAATTAGGACATGATATCACCAACTCATGAATCTCAGCCATGGAACCCCAATGCCTGGCACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171410742 83 - 171630274 AAAACCTGATGAATAAATGAA-GAATTAGGATACGCTATCATCAATTCATGAACCTCAGCCATGGAAATCCAATGTCTGGCACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            237575 83 -    375362 AAAACCTGATGAATAAATGAA-GAATTAGGATACACTATCATCAATACATGAACCTCAGCCGTGGAAATCCAATGCCTGGCACA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      236779 83 -    373274 AAAACCTGATGAATAAATGAA-GAATTAGGATACGCTATCATCAACTCATGAACCTCAGCCATGGAAATCCAATGCCTGGCACA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      169864 83 -    285216 AAAACCTGACGAATAAATGAA-GAAATAGGATACGCTATCATCAATTCATGAACCTCGGCCATGGAAATCCAATGCCTGGCACA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      974134 76 -   3516910 AAAACCTGATGAATA----AA-GAATTAGGACATAATATCACCAAC---TGATCTTCAGCCATGGAACCCCAATGCCTGGTACA
i proCoq1.NW_012147953v1   C 0 I 224
s otoGar3.GL873742           1544381 79 -   2232465 AAAACTTGATGAATA----AA-GAATTAGGACATGGTACCACCAACTCATGATCTTTAGCCATGGAACCCCAATGCCTGGTACA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25903774 81 +  26524999 --TACAT-ATGAATGGAAGAATGAATTAGGACATGATCTCACCAATTCATGATTTTCAGCCATGGAACCTCCATGGTCTGTATA
i canFam3.chr35            C 0 I 2
s dasNov3.JH561790             57612 84 -    302817 GAAACCTGATGAATAAGTGAATGAAACAGGACATGACAGCGCCAACCCGTGAACCTCAGCCATGGCACTGCAATGCCCGAGTAA
i dasNov3.JH561790         C 0 C 0

a score=8433.000000
s hg38.chr6_GL000254v2_alt    168170 5 +   4827813 --ATA-CT
s panTro5.chr6              29155668 5 + 175400573 --ATA-CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389836 5 + 173848474 --ATA-CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5190322 5 +   6154872 --ATA-CT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74189007 5 + 122973662 --CTA-CT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29367098 5 + 172585720 --ATA-CT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29027983 5 - 170955103 --ATA-CT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2008052 5 -   2996164 --ATA-CT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1879943 5 -   2157725 --ATA-CT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28324876 5 -  71996105 --ATA-CT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2004338 5 +   2316924 --ATA-CT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1888748 5 -   3067355 --ATA-CT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171410825 6 - 171630274 --GTATTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            237658 6 -    375362 --GTATTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      236862 6 -    373274 --GTATTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      169947 6 -    285216 --GTATTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1544460 5 -   2232465 --GAA-TT
i otoGar3.GL873742         C 0 I 242
s canFam3.chr35             25903857 3 +  26524999 --ACA---
i canFam3.chr35            I 2 I 1
s dasNov3.JH561790             57696 5 -    302817 GCATA---
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      974210 224 -   3516910 I

a score=12345.000000
s hg38.chr6_GL000254v2_alt    168175 2 +   4827813 AC
s panTro5.chr6              29155673 2 + 175400573 AC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389841 2 + 173848474 AC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5190327 2 +   6154872 AC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74189012 2 + 122973662 AC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29367103 2 + 172585720 AC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29027988 2 - 170955103 AC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2008057 2 -   2996164 AC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1879948 2 -   2157725 AC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28324881 2 -  71996105 AC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2004343 2 +   2316924 GC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1888753 2 -   3067355 AC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171410831 2 - 171630274 AC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            237664 2 -    375362 AC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      236868 2 -    373274 AC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      169953 2 -    285216 AC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1544707 1 -   2232465 A-
i otoGar3.GL873742         I 242 C 0
s canFam3.chr35             25903861 1 +  26524999 A-
i canFam3.chr35            I 1 C 0
s dasNov3.JH561790             57701 2 -    302817 AC
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      974210 224 -   3516910 I

a score=133108.000000
s hg38.chr6_GL000254v2_alt    168177 11 +   4827813 AAAAAGGACTT
s panTro5.chr6              29155675 11 + 175400573 AAAAAGGACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389843 11 + 173848474 AAAAAGGACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5190329 11 +   6154872 AAAAAGGACTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74189014 11 + 122973662 AAAAAGGGCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29367105 11 + 172585720 AAAAAGGACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29027990 11 - 170955103 AAAAAGGACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2008059 11 -   2996164 AAAAAGGACTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1879950 11 -   2157725 AAAAAGGACTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28324883 11 -  71996105 AAAAAGGACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2004345 11 +   2316924 AAAAAGGACTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1888755 11 -   3067355 AAAAAGGACTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171410833 11 - 171630274 AAAAAGGACTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            237666 11 -    375362 AAAAAGGAATT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      236870 11 -    373274 AAAAAGGACTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      169955 11 -    285216 AAAAAGGGCTT
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      974434 11 -   3516910 AAAAAGGACTT
i proCoq1.NW_012147953v1   I 224 C 0
s otoGar3.GL873742           1544708  9 -   2232465 AAAAAGAA--T
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25903862 11 +  26524999 CTATAGACCAT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             57703 11 -    302817 CCGTAGGATCT
i dasNov3.JH561790         C 0 I 241

a score=505960.000000
s hg38.chr6_GL000254v2_alt    168188 42 +   4827813 GAG-AAAATACTTTCCTAGTAAAATTACAGGATTAACCAAT---AT
s panTro5.chr6              29155686 42 + 175400573 GAG-AAAATACTTTCCTAGTAAAATTACAGGATTAACCAAT---AT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389854 42 + 173848474 GAG-AAAATACTTTCCTAGTAAAATTACAGGATTAACCAAT---AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5190340 42 +   6154872 GAG-AAAATACTTTCCTAGTAAAATTACAGGATTAACCAGT---AT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74189025 45 + 122973662 GAG-AAAATACCTTCCTAGTAAAATTACAGGATTAACCAATATAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29367116 42 + 172585720 GAG-AAAATACTTTCGTAGTAAAATTACAGGGTTAATCAAT---AT
i rheMac8.chr4             C 0 I 2
s macFas5.chr4              29028001 42 - 170955103 GAG-AAAATACTTTCCTAGTAAAATTACAGGGTTAATCAAT---AT
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1     2008070 42 -   2996164 GAG-AAAATACTTTCCTAGTAAAATTACAGGGTTAATCAAT---AT
i macNem1.NW_012011356v1   C 0 I 2
s cerAty1.NW_012001495v1     1879961 42 -   2157725 GAG-AAAATACTTTCCTAGTAAAATTACAGGGTTAATCAAT---AT
i cerAty1.NW_012001495v1   C 0 I 2
s chlSab2.chr17             28324894 42 -  71996105 GAG-AAAATACTTTCCTAGTAAAATTACAGGGTTAATCAAT---AT
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012104165v1     2004356 42 +   2316924 GAG-AAAATACTTTCCTAGTAAAATTACAGGGTTAATCAAT---AT
i manLeu1.NW_012104165v1   C 0 I 2
s colAng1.NW_012115566v1     1888766 42 -   3067355 GAG-AAAATACTTTCCTAGTAAAATTATAGGATTAACCAAT---AT
i colAng1.NW_012115566v1   C 0 I 2
s calJac3.chr4             171410844 42 - 171630274 GAG-AAAATACTTTCCTAGTAAAACTACAGGATTAACCAGT---GT
i calJac3.chr4             C 0 I 2
s saiBol1.JH378348            237677 43 -    375362 GAGAAAAATACTCTCCTAGTAAAACTACAGGATTAACCAGT---AT
i saiBol1.JH378348         C 0 I 2
s cebCap1.NW_016108108v1      236881 42 -    373274 GAG-AAAATACTTTCCTAGTAGAACTACAGGATTAACCAGT---GT
i cebCap1.NW_016108108v1   C 0 I 2
s aotNan1.NW_018494050v1      169966 42 -    285216 GAG-AAAATACTTTCCTAGTGAAACTACAGGATTAACCAGT---GT
i aotNan1.NW_018494050v1   C 0 I 2
s proCoq1.NW_012147953v1      974445 42 -   3516910 GAG-AAAACACTTTCCTAACAAAATTACAGGATTAACCAAT---AC
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1544717 42 -   2232465 GAG-AAAACACTTTCATAGTAAAATTACAGGACTAGCCAAT---AC
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25903873 42 +  26524999 AAA-ATCTTGTCTTCTGAGGCCATGTCCAGAAGCAGGAAAG---AT
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             57714 241 -    302817 I

a score=-1000.000000
s hg38.chr6_GL000254v2_alt    168230 2 +   4827813 --AA
s panTro5.chr6              29155728 2 + 175400573 --AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389896 2 + 173848474 --AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5190382 2 +   6154872 --AA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74189070 2 + 122973662 --AA
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873742           1544759 2 -   2232465 --AG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25903915 2 +  26524999 CC--
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             57714 241 -    302817 I
e proCoq1.NW_012147953v1      974487 0 -   3516910 C
e saiBol1.JH378348            237720 2 -    375362 I
e aotNan1.NW_018494050v1      170008 2 -    285216 I
e cebCap1.NW_016108108v1      236923 2 -    373274 I
e calJac3.chr4             171410886 2 - 171630274 I
e colAng1.NW_012115566v1     1888808 2 -   3067355 I
e manLeu1.NW_012104165v1     2004398 2 +   2316924 I
e chlSab2.chr17             28324936 2 -  71996105 I
e cerAty1.NW_012001495v1     1880003 2 -   2157725 I
e macNem1.NW_012011356v1     2008112 2 -   2996164 I
e macFas5.chr4              29028043 2 - 170955103 I
e rheMac8.chr4              29367158 2 + 172585720 I

a score=95641.000000
s hg38.chr6_GL000254v2_alt    168232 110 +   4827813 GAA---CTGTAGGCAggccgggcgcggttgctcacgcctgtaatcccagcactttagga----------------ggccaaggcaggtggatcacaagggtcagg----agttcaagaccaccctggccaaga
s panTro5.chr6              29155730 110 + 175400573 GAA---CTGTAGGCAggccgggcgcggttgctcacgcctgtaatcccagcactttagga----------------ggccgaggcaggtggatcacaagggtcagg----agttcaagaccaccctggccaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29389898 110 + 173848474 GAA---CTGTAGGCAggccgggcgcggttgctcacgcctgtaatcccagcactttagga----------------ggccgaggcaggtggatcacaagggtcagg----agttcaagaccaccctggccaaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5190384 110 +   6154872 GAA---CTGTAGGCAggccgggcgcggtggctcatgcctgtaatcccagcactttagga----------------ggccgaggcaggtggatcacaagggtcagg----agttcaagaccagcctggccaaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74189072 110 + 122973662 GAA---CTGTAGGGAggccaggcgcggtggctcacgcctttaatcccagcactttagga----------------ggccaagacaggtggatcacaagggtcagg----agctcaagaccagcctggccaaga
i nomLeu3.chr1a            C 0 C 0
s canFam3.chr35             25903917 128 +  26524999 AAATCCCTGGAACAAAGCTGTTCTC-TCAGCCCAATCTTGCCTCCTCAGCACATGGTGACCCTTGTGTCCCCAGGGGCTTAGCTTGGTGGTTC---TGGGCTAGAAGCCAGTTCTGGACC-TTCTGACCTACA
i canFam3.chr35            C 0 I 70
e dasNov3.JH561790             57714 241 -    302817 I
e proCoq1.NW_012147953v1      974487   0 -   3516910 C
e saiBol1.JH378348            237720   2 -    375362 I
e otoGar3.GL873742           1544761   0 -   2232465 C
e aotNan1.NW_018494050v1      170008   2 -    285216 I
e cebCap1.NW_016108108v1      236923   2 -    373274 I
e calJac3.chr4             171410886   2 - 171630274 I
e colAng1.NW_012115566v1     1888808   2 -   3067355 I
e manLeu1.NW_012104165v1     2004398   2 +   2316924 I
e chlSab2.chr17             28324936   2 -  71996105 I
e cerAty1.NW_012001495v1     1880003   2 -   2157725 I
e macNem1.NW_012011356v1     2008112   2 -   2996164 I
e macFas5.chr4              29028043   2 - 170955103 I
e rheMac8.chr4              29367158   2 + 172585720 I

a score=153018.000000
s hg38.chr6_GL000254v2_alt    168342 167 +   4827813 tggtgaaaccccgtctctactaaaaacaaaaaattagccgggcgcggtggtaggcgcctgtagtcccagctactcaggaggctgaggcaggaaaatcgcttgaacctgggaggcagaggttgcagtgagccgagatcgtgccactgcactctagactgggcgacaga
s panTro5.chr6              29155840 167 + 175400573 tggtgaaaccccgtctctaccaaaaataaaaaattagccgggtgcagtggtaggcgcctgtagtcccagctactcaggaggctgaggcaggaaaatcgcttgaacctgggaggcagaggttgcagtgagccgagatcgtgccactgcactctagactgggcgacaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29390008 167 + 173848474 tggtgaaaccccgtctctactaaaaataaaaaattagccgggtgcggtggtaggcgcctgtagtcccagctactcaggaggctgaggcaggaaaatcgcttgaacctgggaggcagaggttgcagtgagccgagatcgtgccactgcgctctagactgggcgacaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5190494 167 +   6154872 tggtgaaaccccgtctctactaaaaataaaaaattagccgggcgcggtggtaggcgcctgtagtcccacctactcaggaggctgaggcaggaaaatcgcttgaacctgggaggcagaggttgcagtgagccgagatcgtgccactgcactctagactgggcaacaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74189182 167 + 122973662 tggtgaaaccccatctctactaaaaataaaaaattagccaggcgcagtggtaggcgcctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagccgagatcgtgccactgcactctagcctgggcgacaga
i nomLeu3.chr1a            C 0 C 0
e dasNov3.JH561790             57714 241 -    302817 I
e proCoq1.NW_012147953v1      974487   0 -   3516910 C
e canFam3.chr35             25904045  70 +  26524999 I
e saiBol1.JH378348            237720   2 -    375362 I
e otoGar3.GL873742           1544761   0 -   2232465 C
e aotNan1.NW_018494050v1      170008   2 -    285216 I
e cebCap1.NW_016108108v1      236923   2 -    373274 I
e calJac3.chr4             171410886   2 - 171630274 I
e colAng1.NW_012115566v1     1888808   2 -   3067355 I
e manLeu1.NW_012104165v1     2004398   2 +   2316924 I
e chlSab2.chr17             28324936   2 -  71996105 I
e cerAty1.NW_012001495v1     1880003   2 -   2157725 I
e macNem1.NW_012011356v1     2008112   2 -   2996164 I
e macFas5.chr4              29028043   2 - 170955103 I
e rheMac8.chr4              29367158   2 + 172585720 I

a score=19994.000000
s hg38.chr6_GL000254v2_alt    168509 23 +   4827813 gcaagactccacctcaaaaaaaa
s panTro5.chr6              29156007 23 + 175400573 gcaagaccccacctcaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29390175 23 + 173848474 gcaagaccctacctcaaaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5190661 23 +   6154872 gcaagactccacctcaaaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74189349 23 + 122973662 gcaagactccatctcaaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s canFam3.chr35             25904115 16 +  26524999 ACAAGA-------TTAACCAACA
i canFam3.chr35            I 70 C 0
e dasNov3.JH561790             57714 241 -    302817 I
e proCoq1.NW_012147953v1      974487  0 -   3516910 C
e saiBol1.JH378348            237720  2 -    375362 I
e otoGar3.GL873742           1544761  0 -   2232465 C
e aotNan1.NW_018494050v1      170008  2 -    285216 I
e cebCap1.NW_016108108v1      236923  2 -    373274 I
e calJac3.chr4             171410886  2 - 171630274 I
e colAng1.NW_012115566v1     1888808  2 -   3067355 I
e manLeu1.NW_012104165v1     2004398  2 +   2316924 I
e chlSab2.chr17             28324936  2 -  71996105 I
e cerAty1.NW_012001495v1     1880003  2 -   2157725 I
e macNem1.NW_012011356v1     2008112  2 -   2996164 I
e macFas5.chr4              29028043  2 - 170955103 I
e rheMac8.chr4              29367158  2 + 172585720 I

a score=1731.000000
s hg38.chr6_GL000254v2_alt    168532 1 +   4827813 -a
s panTro5.chr6              29156030 1 + 175400573 -a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29390198 1 + 173848474 -a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5190684 1 +   6154872 -a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74189372 1 + 122973662 -a
i nomLeu3.chr1a            C 0 C 0
s proCoq1.NW_012147953v1      974487 1 -   3516910 -A
i proCoq1.NW_012147953v1   C 0 C 0
s canFam3.chr35             25904131 2 +  26524999 CA
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             57714 241 -    302817 I
e saiBol1.JH378348            237720 2 -    375362 I
e otoGar3.GL873742           1544761 0 -   2232465 C
e aotNan1.NW_018494050v1      170008 2 -    285216 I
e cebCap1.NW_016108108v1      236923 2 -    373274 I
e calJac3.chr4             171410886 2 - 171630274 I
e colAng1.NW_012115566v1     1888808 2 -   3067355 I
e manLeu1.NW_012104165v1     2004398 2 +   2316924 I
e chlSab2.chr17             28324936 2 -  71996105 I
e cerAty1.NW_012001495v1     1880003 2 -   2157725 I
e macNem1.NW_012011356v1     2008112 2 -   2996164 I
e macFas5.chr4              29028043 2 - 170955103 I
e rheMac8.chr4              29367158 2 + 172585720 I

a score=1911.000000
s hg38.chr6_GL000254v2_alt    168533 1 +   4827813 a
s panTro5.chr6              29156031 1 + 175400573 a
i panTro5.chr6             C 0 I 1
s panPan2.chr6              29390199 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5190685 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 I 1
s nomLeu3.chr1a             74189373 1 + 122973662 a
i nomLeu3.chr1a            C 0 I 6
s proCoq1.NW_012147953v1      974488 1 -   3516910 A
i proCoq1.NW_012147953v1   C 0 C 0
s dasNov3.JH561790             57955 1 -    302817 A
i dasNov3.JH561790         I 241 C 0
e canFam3.chr35             25904133 0 +  26524999 C
e saiBol1.JH378348            237720 2 -    375362 I
e otoGar3.GL873742           1544761 0 -   2232465 C
e aotNan1.NW_018494050v1      170008 2 -    285216 I
e cebCap1.NW_016108108v1      236923 2 -    373274 I
e calJac3.chr4             171410886 2 - 171630274 I
e colAng1.NW_012115566v1     1888808 2 -   3067355 I
e manLeu1.NW_012104165v1     2004398 2 +   2316924 I
e chlSab2.chr17             28324936 2 -  71996105 I
e cerAty1.NW_012001495v1     1880003 2 -   2157725 I
e macNem1.NW_012011356v1     2008112 2 -   2996164 I
e macFas5.chr4              29028043 2 - 170955103 I
e rheMac8.chr4              29367158 2 + 172585720 I

a score=892569.000000
s hg38.chr6_GL000254v2_alt    168534 79 +   4827813 gaaCTGTAGGCTATGAATGTCCAACACTACTTTCTTAGCACCACTAGAAAGTAG-TGACATGGCACTGAGAAAGTGGTTT
s panTro5.chr6              29156033 79 + 175400573 gaaCTGTAGGCTATGAATGTCCAACACTACTTTCTTAGCACCACTAGAAAGTAG-TGACATGGCACTGAGAAAGTGGTTT
i panTro5.chr6             I 1 C 0
s panPan2.chr6              29390200 79 + 173848474 gaaCTGTAGGCTATGAATGTCCAACACTACTTTCTTAGCACCACTAGAAAGTAG-TGACATGGCACTGAGAAAGTGGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5190687 79 +   6154872 gaaCTGTAGGCTATGAATGTCCAACACTACTTTCTTAGCACCACTAGAAAGTAG-TGACATGGCACTGAGAAAGTGGTTT
i gorGor5.CYUI01015250v1   I 1 C 0
s nomLeu3.chr1a             74189380 79 + 122973662 TAACTGTCGGCTATGAATGTCCAACACTACTTTCTTAGCACCACTAGAAAGCAG-TGACATGGTACTGATAAAGTGGTAT
i nomLeu3.chr1a            I 6 C 0
s rheMac8.chr4              29367160 79 + 172585720 GAACTGTAGTCTATGAATGTCCAACACTACTTTCTTAGCACCTCTAGAAAGTAG-TGATATCATACGGAGAAAGTAGTTT
i rheMac8.chr4             I 2 C 0
s macFas5.chr4              29028045 79 - 170955103 GAACTGTAGTCTATGAATGTCCAACACTACTTTCTTAGCACCTCTAGAAAGTAG-TGATATCATACGGAGAAAGTAGTTT
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1     2008114 79 -   2996164 GAACTGTAGGCTATGAATGTCCAACACTACTTTCTTAGCACCTCTAGAAAGTAG-TGATATCATACGGAGAAAGTAGTTT
i macNem1.NW_012011356v1   I 2 C 0
s cerAty1.NW_012001495v1     1880005 79 -   2157725 GAACTGTAGGCTATGAATGTCCAACACTACTTTCTTAGCACCTCTAGAAAGTAG-TGATATCATACGGAGAAAGTAGTTT
i cerAty1.NW_012001495v1   I 2 C 0
s chlSab2.chr17             28324938 79 -  71996105 GAACTGTAGGCTATGAATGTCCAACACTACTTTCTTAGTACCTCTAGAAAGTAG-TGATATCATACAGAGGAAGTAGTTT
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012104165v1     2004400 79 +   2316924 GAACTGTAGGCTATGAATGTCCAACACTACTTTCTTAGCACCTCTAGAAAGTAG-TGATATCATACGGAGAAAGTAGTTT
i manLeu1.NW_012104165v1   I 2 C 0
s colAng1.NW_012115566v1     1888810 79 -   3067355 GAACTGTAGGCTATGAATGTCCAACACTACTTTCTTAGCACCTCTAGATAGTAG-TGACATCATACCGAGAAAGTAGTTT
i colAng1.NW_012115566v1   I 2 C 0
s calJac3.chr4             171410888 65 - 171630274 GAACCGTGGCCTATGGATGTCCAA--------------CACCACTAGAACATAG-TGCCGTGGTACCGAGAAGGTAGTTT
i calJac3.chr4             I 2 C 0
s saiBol1.JH378348            237722 79 -    375362 GAACTGTGGCCGATAGCTGTCCAACACTACTTTCTTAGCACCATTAGAACATAG-TGACAAGGTCCCTAGAAAGTGGTTT
i saiBol1.JH378348         I 2 C 0
s cebCap1.NW_016108108v1      236925 79 -    373274 GAACTGTGGCCTATGGATGTCCAACACTACTTTCGTAGCACCACTAGAACGTGG-TGACATGGTATCTAGAAAGTAGTTT
i cebCap1.NW_016108108v1   I 2 C 0
s aotNan1.NW_018494050v1      170010 79 -    285216 GAACTGTGGCCTATGGATGTCCAACACTACTTTCTTAGCACCACTAGAACGCAG-TGACACAGTACCGAGAAAGTAGTTT
i aotNan1.NW_018494050v1   I 2 C 0
s proCoq1.NW_012147953v1      974489 79 -   3516910 GAGCTGTAGGCTAT-GATGTCCAACACTACTTTTTCAGCACCGTTAGAAAGCAGTGAATATGGTACTGAGAAAGTAGTTT
i proCoq1.NW_012147953v1   C 0 I 72
s otoGar3.GL873742           1544761 72 -   2232465 AAGCTGTAGGTTATGGATGTCCAGCATTACTTTTTCAGCACCATTAG--------TGATATGGTACTGAGAAAGTTTTGT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25904133 76 +  26524999 GAGCTATAGGCTGTGGATGGCCAA-ACTGCTTTCTTAGCACCATTAGGAAGTGG-T-AGATAGTACTGC-AAAGTAGTAT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             57956 59 -    302817 GAGCTGCAGGCTCTGG-TGTCCACCTCCACTTTCCCAGGACCAGGAGAAGGTCG-TGTCAT-------------------
i dasNov3.JH561790         C 0 C 0

a score=1178875.000000
s hg38.chr6_GL000254v2_alt    168613 103 +   4827813 TATTTTCCAGTTTGAAGTAAACTATTGGCCAGAGTGGGATTTTTGCACCCATATGGGAAAGCAACACCATTAACCATTTCCTCCCCACACGCA--TTCCAACATC-----------
s panTro5.chr6              29156112 103 + 175400573 TATTTTCCAGTTTGAAGTAAACTATTGGCCAGAGTGGGATTTTTGCACCCATATGGGAAAGCAACACCATTAACCATTTCCTCCCCACACGCA--TTCCAACATC-----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29390279 103 + 173848474 TATTTTCCAGTTTGAAGTAAACTATTGGCCAGAGTGGGATTTTTGCACCCATATGGGAAAGCAACACCATTAACCATTTCCTCCCCCCACGCA--TTCCAACATC-----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5190766 103 +   6154872 TATTTTCCAGTTTGAAGTAAACTATTGGCCAGAGTGGGATTTTTGCACCCATATGGGAAAGCAACACCATTAACCATTTCCTCCCCACACGCA--TTCCAACATC-----------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74189459 103 + 122973662 TATTTTCCAGTTTGAAGTAAACTATTGGCCACAGTGGGATTTTTGGACCCATATAGGAAAGCAACACCATTAAGCATTTTCTCCCCACACCCA--TTCCAACATG-----------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29367239 103 + 172585720 TATTTTCCAGTTTTAAGTAAACTATTGGCCAGAGTGGGATTTTGGGACCCATATGGGAAAGCAACACCATTAACCATTTCCTCCCCACACCCA--TTCCAACATC-----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29028124 103 - 170955103 TATTTTCCAGTTTTAAGTAAACTATTGGCCAGAGTGGGATTTTGGGACCCATATGGGAAAGCAACACCATTAACCATTTCCTCCCCACACCCA--TTCCAACATC-----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2008193 103 -   2996164 TATTTTCCAGTTTGAAGTAAACTATTGGCCAGAGTGGGATTTTGGGACCCATATGGGAAAGCAACACCATTAACCATTTCCTCCCCACACCCA--TTCCAACATC-----------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1880084 103 -   2157725 CATTTTCCAGTTTGAAGTAAACTATTGGCCAGAGTGGGATTTTGGGACCCATATGGGAAAGCAACACCATTAACCATTTCCTCCCCACACCCA--TTCCAACATC-----------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28325017 103 -  71996105 TATTTTCCAGTTTGAAGTAAACTATTGGCCAGCGTGGGATTTTGGGACCCATAGGGGAAAGCAACACCATTAACCATTTCTTCCCCACACCCA--TTCCAACATG-----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2004479 103 +   2316924 TATTTTCCAGTTTGAAGTAAACTATTGGCCAGAGTGGGATTTTGGGACCCATATGGGAAAGCAACACCATTAACCATTTCCTCCCCACACCCA--TTCCAACATC-----------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1888889 103 -   3067355 TATTTTCCAGTTTGAAGTAAACCATTGGCCAGAGTGGGATTTTGGGACCCATATGGGAAAGCAACACCATTAACCATTTCCTCCCCACACCCA--TTCCAACATC-----------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171410953 102 - 171630274 TATTTTCCAGTTTGAAGTAAACTGTTGGCCAGAATGGAATTTTTGGACCCATCTGGGAAAGTGACAGCATTAACCGTTTCCT-CCCATACCCA--TTCCAACATC-----------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            237801 103 -    375362 TATTTTCCAGTTTGAAGTAAACTGTTGGCCAGAATGGAATTTTTGGACCCATCTGGGAAAGCAACAGCATTAACCATTTCCTCCCCACACGCA--TTCCAACATC-----------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      237004 103 -    373274 TATTTTCCAGTTTGAAGTAAACTGTTGGCCAGAATGGAATTTTTGGACCCATCTGGGAAAGCGACAGCATTAACCATTTCCTCCCCACACCCA--TTCCAACATC-----------
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      170089 103 -    285216 TATTTTGCAGTTTGAAGTAAACTGTTGGCCAGAATGGAGTTTTTGGACCCATCTGGGAAAGCGACAGCATTAACCATTTCCTCCCCACACCCA--TTCCAACATC-----------
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1544833  93 -   2232465 -----CACGAGTAGAAGTAAAATATTGGCCAGAATGGGATTCT-GGACTCAT--GGGAAATCAAAACCATTAACCACTTCCTCCCCCT--CCC--TTCCAACTTG-----------
i otoGar3.GL873742         C 0 I 2
s canFam3.chr35             25904209  99 +  26524999 TTTCATCCAGTTTGAAGTCTAATGTTGGCCA-AACAGGATTCT-GGACCCATAGGGGAAATCAACACCCTTAACTA---CCCCTCCAGTCCCA-CCCCCAACCTC-----------
i canFam3.chr35            C 0 I 2
s dasNov3.JH561790             58015 104 -    302817 ------CCAGCTGGAAGTA-----TCACTCAGAACGTGATTCT-GGACCCACGAGGGAAATCAACACCACTGACTTTTCCTCCCCTGCGTCCCTCTTTCAACTCGCTCCACATGCA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      974568  72 -   3516910 I

a score=25233439.000000
s hg38.chr6_GL000254v2_alt    168716 1718 +   4827813 TGAACCCAATCCTACCAACACCCAGAAAGCAACAACAATGTA---------------------------------A---ACATCCATATTCAGTTTATTTTTAAACAGAGGGGCACGTACCCACAGAGAAGCAGGACTGAGAACCATCATGGGGGCTTGCTTGAAGTGATCTGCCCCAGCCTTCTGACTTCAGAGTGTCTCATGATCCAATGGCCATGGGGACGGAGCTGCCCCTTGATAGGATGCACTTAAGCATGGTCAATTCCCCCTTCCCCCAAAGGAAATGGAGAAAAGGAGCC-AAGAAGTCAATGAATCCCTGGAATATTGTCCCAGAATCCTTCCAGGGATG---GTATACGACTGGCCACCAGTCCACAAATGTGACTGGTAAGGGATCTAGTAACAGAGGATGGAGTTGGGCAGAATATTATCCTGGATGATATGCACCCAGCAC-----TAGAATACACCTTTCATTAGAATGAAGAGAACAGACAAAGCCCTCAGAAAAGATAC-AAAGGC--AGAG---ACATTGATTAGAACATTATCTCATAACAGA-----GGT-G-GGGCCATTACCCACCATTATTGTAAAATAACTG-TAAC-TAACCAAAACACATACAGGCTTCTTTAATGGAGTTAATAAAACTATGGCACATTGGGAATCAGGGGCAGAGGTACTGTTCCCAGACGG-AAAACTGGGATAAAGGGAGCCATGCT---GACAGGGCC---TTA-----TTCCAGTCTAGGTTGTTAGAAAGG------AGCCCTAGCCCAGAAATGACAGCAAATAGCCATAATCATTATGTGGGGCTGAACCAGAGGAAGCCAGGCTGAGCCAAGAAGCTGGAAGTATCTTGAACGGCTCTCCAAATCCAAAGATTATCCATA--CTCTTTATCC-CTCCAGCGATGTGTAAAACCAGAAAGTAT--GAAACACTGGAGGTGGACATC-------TGGTTTTTATTTCTAGGATATCTTGA-TACATCTCATTACATTTCACAATCTGCATGGGAAGGAAAAGGATGGTAGAGAACATGGACATCCTGTCTCCCACTGCAAGGGCGTGGAACATGGTAAGGATACCCAGCTGTG----ACAGGACGTGGCAAGGCAACAAGATGCCTTGTGCCTGGCGTAGGATTACAGCCAACAGCCCTTTTGGCCTGAATTCACCTCCTCAAGGGGAGGTCTCCATGGAATGACCATGATTCCCAACATGGCCAGAAAACCCATCTATCCCACTCATGGGGCAGATGATCAGAGGAGCTGCACTTTTCCCTCCCGAGTAACTCAGACTGAAGTAGGGCCGGACAGGCCCACAAAAGGTAGCATGAGAGAAAGTGAAGGTGTGACACCTCTCTGTCACGTTGTAGAAGGAGACCTCACCAGCATCATAGTCCAAGAAAATCCCCACCCGCTGGAGCGGGGTCCGCAGGGGTAGGGCAGTCATTGGGGAGGTAAGAGCCCAATATTCTTTCCCATACCACAAAGACACTGCCCAGAATCCATTCTGGGGGGCTGAGGTTACTCCACCTTTTCTGCACACTGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACCTCTACCTCCCAATAATGTCTCCCGGCGATGAAGCATGGAGAGCCCAAGACACAGGGAAACAGATTGAACCTCTCGGGGTTGTCAGGCAGGTCCTGTTGGAGGTAACTGTACCGCACTTGCCGCAGATTATCAGAGAGGATCAGGCTGGGGTAGGCCGTGTCTGGGTCCAGAGTCACGTCCACTGCAGAGACACAA-
s panTro5.chr6              29156215 1718 + 175400573 TGAACCCAATCCTACCAACACCCAGAAAGCAACAACAATGTA---------------------------------A---ACATCCATATTCAGTTTATTTTTAAACAGAGGGGCATGTACCCACAGAGAAGCAGGACTGAGAACCATCATGGGGGCTTGCTTGAAGTGATCTGCCCTAGCCTTCTGACTTCAGAGTGTCTCATGATCCAATGGCCATGGGGATGGAGCTGCCCCTTGATAGTATGCACTTAAGAATGGTCAATTCCCCCTTCCCCCAAAGGAAATGGAGAAAAGGAGCC-AAGAAGTCAATGAATCCCTGGAATATTGTCCCAGAATCCTTCCAGGGATG---GTATACGACTGGCCACCAGTCCACAAATGTGACTGGTAAGGGATCTAGTAACAGAGGATGGAGTTGGGCAGAATATTATCCTGGATGATATGCACCCAGCAC-----TAGAATACACCTTTCGTTAGAATGAAGAGAACAGACAAAGCCCTCGGAAAAGATAC-AAAGGC--AGAG---ACATTGATTAGAACGTTATCTCATAACAGA-----GGT-G-GGGCCATTACCCACCATTATTGTAAAATAACTG-TAAC-TAACCAAAACACATACAGGCTTCTTTAATGGAGTTAATAAAACTATGACACATTGGGAATCAGGGGCAGAGGTACTGTTCCCAGACAG-AAAACTGGGATAAAGGGAGCCATGCT---GACAGGGCC---TTA-----TTCCAGTCTAGGTTGTTAGAAAGG------AGCCCTAGCCCAGAAATGACAGCAAATAGCCATAATCATTATGTGGGGCTGAACCAGAGGAAGCCAGGCTGAGCCAAGAAGCTGGAAGTATCTTGAATGGCTCTCCAAATCCAAAGATTATCCATA--CTCTTTATCC-CTCCAGCGATGTGTAAAACCAGAAAGTAT--GAAACACTGGAGGTGGACATC-------TGGTTTTTATTTCTAGGATATCTTGA-TACATCTCATTACATTTCACAATCTGCACGGGAAGGAAAAGGATGGTAGAGAACATGGACATCCTGTCTCCCACTGCAAGGGCGTGGAACATGGTAAGGATACCCAGCTGTG----ACAGGACGTGGCAAGGCAACAAGATGCCTTGTGCCTGGCGTAGGATTACAGCCAACAGCCCTTTTGGCCTGAATTCACCTCCTCAAGGGGAGGTCTCCATGGAATGACCATGATTCCCAACATGGCCAGAAAACCCATCTATCCCACTCATGGGACAGATGATCAGAGGAGCTGCACTTTTCCCTCCCGAGTAACTCAGACTGAAGTAGGGCCGGACAGGCCCACAAAAGGTAGCATGAGAGAAAGTGAAGGTGTGACACCTCTCTGTCACGTTGTAGAAGGAGACCTCACCAGCATCATAGTCCAAGAAAATCCCCACCCGCTGGAGCGGGGTCCGCAGGGGTAGGGCAGTCATTGGGGAGGTAAGAGCCCAATATTCTTTCCCATACCACAAAGACACTGCCCAGAATCCATTCTGGGGGGCTGAGGTTACTCCACCTTTTCTGCACACTGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACCTCTACCTCCCAATAATGTCTCCCGGCGATGAAGCACGGAGAGCCCAAGACACAGGGAAACAGATTGAACCTCTCGGGGTTGTCAGGCAGGTCCTGTTGGAGGTAACTGTACCGCACTTGCCGCAGATTATCAGAGAGGATCAGGCTGGGGTAGGCCGTGTCTGGGTCCAGAGTCACGTCCACTGCAGAGACACAA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29390382 1720 + 173848474 TGAACCCAATCCTACCAACACCCAGAAAGCAACAACAATGTA---------------------------------A---ACATCCATATTCAGTTTATTTTTAAACAGAGGGGCATGTACCCACAGAGAAGCAGGACTGAGAACCATCATGGAGGCTTGCTTGAAGTGATCTGCCCTAGCCTTCTGACTTCAGAGTGTCTCATGATCCAATGGCCATGGGGATGGAGCTGCCCCTTGATAGTATGCACTTAAGAATGGTCAATTCCCCCTTCCCCCAAAGGAAATGGAGAAAAGGAGCC-AAGAAGTCAATGAATCCCTGGAATATTGTCCCAGAATCCTTCCAGGGATG---GTATACGACTGGCCACCAGTCCACAAATGTGACTGGTAAGGGATCTAGTAACAGAGGATGGAGTTGGGCAGAATATTATCCTGGATGATATGCACCCAGCAC-----TAGAATACACCTTTCGTTAGAATGAAGAGAACAGACAAAGCCCTCGGAAAAGATAC-AAAGGC--AGAG---ACATTGATTAGAACGTTATCTCATAACAGA-----GGT-G-GGGCCATTACCCACCATTATTGTAAAATAACTG-TAAC-TAACCAAAACACATACAGGCTTCTTTAATGGAGTTAATAAAACTATGACACATTGGGAATCAGGGGCAGAGGTACTGTTCCCAGACGG-AAAACTGGGATAAAGGGAGCCATGCT---GACAGGGCC---TTA-----TTCCAGTCTAGGTTGTTAGAAAGG------AGCCCTAGCCCAGAAATGACAGCAAATAGCCATAATCATTATGTGGGGCTGAACCAGAGGAAGCCAGGCTGAGCCAAGAAGCTGGAAGTATCTTGAATGGCTCTCCAAATCCAAAGATTATCCATACTCTCTTTATCC-CTCCAGCGATGTGTAAAACCAGAAAGTAT--GAAACACTGGAGGTGGACATC-------TGGTTTTTATTTCTAGGATATCTTGA-TACATCTCATTACATTTCACAATCTGCACGGGAAGGAAAAGGATGGTAGAGAACATGGACATCCTGTCTCCCACTGCAAGGGCGTGGAACATGGTAAGGATACCCAGCTGTG----ACAGGACGTGGCAAGGCAACAAGATGCCTTGTGCCTGGCGTAGGATTACAGCCAACAGCCCTTTTGGCCTGAATTCACCTCCTCAAGGGGAGGTCTCCATGGAATGACCATGATTCCCAACATGGCCAGAAAACCCATCTATCCCACTCATGGGACAGATGATCAGAGGAGCTGCACTTTTCCCTCCCGAGTAACTCAGACTGAAGTAGGGCCGGACAGGCCCACAAAAGGTAGCATGAGAGAAAGTGAAGGTGTGACACCTCTCTGTCACGTTGTAGAAGGAGACCTCACCAGCATCATAGTCCAAGAAAATCCCCACCCGCTGGAGCGGGGTCCGCAGGGGTAGGGCAGTCATTGGGGAGGTAAGAGCCCAATATTCTTTCCCATACCACAAAGACACTGCCCAGAATCCATTCTGGGGGGCTGAGGTTACTCCACCTTTTCTGCACACTGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACCTCTACCTCCCAATAATGTCTCCCGGCGATGAAGCACGGAGAGCCCAAGACACAGGGAAACAGATTGAACCTCTCGGGGTTGTCAGGCAGGTCCTGTTGGAGGTAACTGTACCGCACTTGCCGCAGATTATCAGAGAGGATCAGGCTGGGGTAGGCCGTGTCTGGGTCCAGAGTCACGTCCACTGCAGAGACACAA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5190869 1723 +   6154872 TGAACCCAATCCTACCAACACCCAGAAAGCAACAACAATGTA---------------------------------A---ACATCCATATTCAGTTTATTTTTAAACAGAGGGGCATGTACCCACAGAGAAGCAGGACTGAGAACCATCATGGGGGCTTGCTTGAAGTGATCTGCCCCAGCCTTCTGACTTCAGAGTGTCTCATGATCCAATGGCCATGGGGATGGAGCTGCCCCTTGATAGTATGCACTTAAGAATGGTCAATTCCCCCTTCCCCCAAAGGAAATGGAGAAAAGGAGCC-AAGAAGTCAATGAATCCCTGGAATATTGTCCCAGAATCCTTCCAGGGATG---GTATACGACTGGCCACCAGTCCACAAATGTGACTGGTAAGGGATCTAGTAACAGAGGATGCAGTTGGGCAGAATATTATCCTGGATGATATGCACCCAGCAC-----TAGAATACACCTTTCATTAGAATGAAGAGAACAGACAAAGCCCTCAGAAAAGATAC-AAAGGC--AGAG---ACATTGATTAGAACATTATCTCATAACAGA-----GGT-G-GGGCCATTACCCACCATTATTGTAAAATAACTG-CAAC-TAACCAAAACACATACAGGCTTCTTTAATGGAGTTAATAAAACTATGACACATTGGGAAAAAGGGGCAGAGGTACTGTTCCCAGATGGAAAAACTGGGATAAAGGGAGCCATGCT---GACAGGACC---TTA-----TTCCAGTCTAGGTTGTTAGAAAGGAGCCCTAGCCCTAGCCCAGAAATGACAGCAAATAGCCATAATCATTATGCGGGGCTGAACCAGAGGAAGCCAGGCTGAGCCAAGAAGCTGGAAGTATCTTGAATGGCTCTCCAAATCCAAAGATTATCCATA--CTCTTTATCC-CTCCAGCGATGTGTAAAACCAGAAAGTAT--GAAACACTGGAGGTGGACATC-------TGGTTTTTATTTCTAGGATATCTTGA-TACATCTCATTACATTTCACAATCTGCACGGGAAGGAAAAGGATGGTAGAGAACACGGACATCCTGTCTCCCACTGCAAGGGCGTGGAACATGGTAAGGATACCCAGCTGTG----ACAGGACGTGGCAAGGCAACAAGATGCCTTGTGCCTGGCGTAGGATTATAGCCAACAGCCCTTTTGGCCTGAATTCACCTCCTCAAGGGGAGGTCTCCATGGAATGACCATGATTCCCAACATGGCCAGAAAACCCATCTATCCCACTCATGGGGCAGATGATCAGAGGAGCTGCACTTTTCCCTCCCGAGTAACTCAGACTGAAGTAGGGCCGGACAGGCCCACAAAAGGTAGCATGAGAGAAAGTGAAGGTGTGACACCTCTCTGTCACGTTGTAGAAGGAGACCTCACCAGCATCATAGT-CAAGAAAATCCCCACCCGCTGGAGCGGGGTCCGCAGGGGTAGGGCAGTCATTGGGGAGGTAAGAGCCCAATATTCCTTCCCATACCATAAAGACACTGCCCAGAATCCATTCTGGGGGGCTGAGGTTACTCCACCTTTTCTGCACACTGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACCTCTACCTCCCAATAATGTCTCCCAGCGATGAAGCACGGAGAGCCCAAGACACAGGGAAACAGATTGAACCTCTCGGGGTTGTCAGGCAGGTCCTGTTGGAGGTAACTGTACCGCACTTGCCGCAGATT-TCAGACAGGATCAGGCTGGGGTAGGCCGTGTCTGGGTCCAGAGTCACGTCCACTGAAGAGACACAA-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74189562 1719 + 122973662 TGAACCCAATCCTACCAACACCCAGAAAGCAACAACAATGTA---------------------------------A---ACATCCATGTTCACTTTATTTTTAAACAGAGGGGCATGTACCCAAAGAGAAGCAGGAGTGAGAACCATCATGGGGGCTTGCTCGAAATCATCTGCCCCAGCCTTCTGACTTCAGAGTGTCTCATGATCCAATGGCCATGGGGATGGAGCTGTCCCTTGATAGTATGCACTTAAGAATGGTCAATTCCCCCATCCCCCAAAGGAAATGGAGAAAAGGACCC-AAGAAGTCAATAAATCCCTGGAATATTGTCCCAGAATCCTTCCAGGGATG---GTATATGACTGGCCACCAGTCCACAAATGTGACTGGTAAGGGATCTAGTAACAGAGGATGGAGATGGGCAGAATATTATCCTGGATGATATGCACCCAGCAC-----TAGAATACACCTTTCATTAGAATGAAGGGAGCAGACAAAGCCCTCAGAAAAGATAC-AAAGGC--AGAG---ACATTGATTAGAACATTATCTCATAACAGA-----GGT-G-GGGCCATTACCCACTATTATTGTAAAATAACTG-TAACTTAACCAAAACACATACAGGCTTCTTTAATGGAGTTAATAAAACTATGGCAGATTGGGAATCAGGGGCAGAGGTACTGTTCCCAGAGGA-AAAACTGGGATAAAGGGAGCCATGCT---GACAGGGCC---TTG-----TTCCAGTCTAGGTTGTTAGAAAGG------AGCCCTAGCCCAGAAATGACAGCGAATCGCCATAATCATTATGTGGGGCTGAACCAGAGGAAGCCAGGCTGAGCCAAGAAGCTGGAAGTATCTTGAATGTCTCTCCAAATCCAAAGATTATCCATA--CTCTTTATCC-TTCCAGCAATGTGTAAAACCAGAAAGTGT--GAAACACTGGAGGTGGACATC-------TGGTTTTTATTTCTAGGATATCTTGA-TACATCTCATTACATTTCACAATCTGCATGGGAAGGAAAAGGATGGTAGAGAACATGGACATCCTGTCTCCCACTGCAAGGGCGTGGAACATGGTAAGGATACCCAGCTGTG----ACAGGACGTGGCAAGGCAACAAGATGCCTTGTGCCTGGCGTAGGATTACAGCCAACAGCCCTTTTGGCCTGAATTCACCTCCTCAAGGGGAGGTCTCCATGGAATGACCATGATTCCCAACATGGCCAGAAAACCCATCTATCCCACTCATGGGGCAGATGATCAGAGGAGCTGCGCTTTTCCCTCCCGAGTAACTCAGACTGAAGTAGGGCCGGACAGGCCCACAAAAGGTAGCATGAGAGAAAGTGAAGGTGTGACACCTCTCTGTCACGTTGTAGAAGGAGACCTCACCAGCATCATAGTCCAAGAAAATCCCCACCCGCTGGAGCGGGGTCCGCAGGGGGAGGGCAGTCATTGGGGAGGTAAGAGCCCAATATTCTTTCCCATACCACAAAGACACTGCCCAGAATCCATTCTGGGGGGCTGAGGTTACTCCACCTTTTCTGCACACTGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACCTCTACCTCCCAATAATGTCTCCCAGCGATGAAGCACGGAGAGCCCAAGACACAGGGAAACAGATTGAACCTCTCGGGGTTGTCAGGCAGGTCCTGTTGGAGGTAACTGTACCGCACTTGCCGCAGATTATCAGAGAGGATCAGGCTGGGGTAGGCCGTGTCTGGGTCCAGAGTCACGTCCACTGCAGAGACAAAA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29367342 1718 + 172585720 TGAACCCAATCCTACCAACACCCAGAAAGCAACAACAATGTA---------------------------------A---ACATCCATATTCACTTTATTTTTAAACAGAGGGACATGTACCCAAAGAGAAGCAGGACTGAGAACCATCATGGGGGCTTGCTTGAAGTGATCTGCCCCAGCCTTCTGACTTCAGAGTGTCTCATGATCCAATGGCCATGGGGGTGGAGCTGCCCCTTGACAGTATGCACTTAAGAATGGTCAATTCCCCTATCCCCCAAAGGAAATGGAGAAAAGGAGCC-AAGAAGTCAATGAATCCCTGGAATATTGTCCCAGAATCCTTCCAGGGATG---GTATACCACTGACCACCAGTCCACAAATGTGACTGGTAAGGGATCTAGTAACAGAGGATGGAGTTGGGCAGAATATTATCCTGGATGATATGCGCCCAGCAC-----TAGAATACACCTTTCATTAGAATGAAGGGAGCAGACAAAACCCTCAGAAAAGATAC-AAAGGC--AGAG---ACATTGATTAGAACATTATCTCATAACAGA-----GGT-G-GGGCCATTACCCACCATTATTGTAAAATAACTG-TAAC-TAACCAAAACACATACAGGCCTCTTTAATGGAGTTAATAAAACTATGGCAGATTGGGAATCAGGGGCAGAGGTACTGTTCCCAGATGGAAAAACTGGGATAAC-GGAGCCATGCT---GACAGGGCC---TTG-----TTCCAGTCTAGGTTGTTAGAAAGG------AGCCCTAACCCAGAAATGACAGCAAACAGCCATAATCATTATGTGGGGCTGAACCAGAGGAAGCCAGGCTGAGCCAAGAAGGTGGAAGTATCTGGAATGGCTCTCCAAATCCAAAGATTATCCATA--CTCTTTATCC-CTCCAGCAATGTGTAAAACCAGAAAGTGT--GAAACACTGGAGGTGGACATC-------TGGTTTTTATTTCTAGGATATCTTGA-TACATCTCATTACATTTCACAATCTGCACGGGAAGGAAAAGGATGGTAGAGAACATGGACATCCTGTCTCCCACTGCAAGGGCATGGAACATGGTAAGTATACCCAGCTGTG----ACAGGACGTGGCAAGGCAACAAGATGCCTTGTGCCTGGCATAGGATTACAGCCAACAGCCCTTTTGGCCTGAATCCACCTCCTCAAGGGGAGGTCTCCATGGAATGACCATGATTCCCAACATGGCCAGAAAACCCATCTATCCCACTCATGGGGCAGATGATCAGAGGAGCTGCGCTTTTCCCTCCCGAGTAACTCAGACTGAAGTAGGGCCGGACAGGCCCACAAAAGGTAGCATGAGAGAAAGTGAAAGTGTGACACCTCTCTGTCACGTTGTAGAAGGAGACCTCGCCAGCATCATAGTCCAAGAAAATCCCCACCCGCTGAAGCGGGGTCCGCAGGGGGAGGGCAGTCATCGGGGAGGTAAGAGCCCAATATTCTTTCCCATACCACAAAGACACTGCCCAGAATCCATTCTGGGGGGCTGAGGTTACTCCACCTTTTCTGCACACTGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACCTCTACCTCCCAATAATGTCTCCCAGCGATGAAGCATGGAGAGCCCAAGACACAGGGAAACAGATTGAACCGCTCGGGGTTGTCAGGCAGGTCCTGTTGGAGGTAACTGTACCGCACTTGCCGCAGATTGTCAGAGAGGATCAGGCTGGGGTAGGCCGTGTCTGGGTCCAGAGTCACGTCCACTGCAGAGACACAA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29028227 1718 - 170955103 TGAACCCAATCCTACCAACACCCAGAAAGCAACAACAATGTA---------------------------------A---ACATCCATATTCACTTTATTTTTAAACAGAGGGGCATGTACCCAAAGAGAAGCAGGACTGAGAACCATCATGGGGGCTTGCTTGAAGTGATCTGCCCCAGCCTTCTGACTTCAGAGTGTCTCATGATCCAATGGCCATGGGGGTGGAGCTGCCCCTTGACAGTATGCACTTAAGAATGGTCAATTCCCCTATCCCCCAAAGGAAATGGAGAAAAGGAGCC-AAGAAGTCAATGAATCCCTGGAATATTGTCCCAGAATCCTTCCAGGGATG---GTATACCACTGACCACCAGTCCACAAATGTGACTGGTAAGGGATCTAGTAACAGAGGATGGAGTTGGGCAGAATATTATCCTGGATGATATGCGCCCAGCAC-----TAGAATACACCTTTCATTAGAATGAAGGGAGCAGACAAAACCCTCAGAAAAGATAC-AAAGGC--AGAG---ACATTGATTAGAACATTATCTCATAACAGA-----GGT-G-GGGCCATTACCCACCATTATTGTAAAATAACTG-TAAC-TAACCAAAACACATACAGGCCTCTTTAATGGAGTTAATAAAACTATGGCAGATTGGGAATCAGGGGCAGAGGTACTGTTCCCAGATGGAAAAACTGGGATAAC-GGAGCCATGCT---GACAGGGCC---TTG-----TTCCAGTCTAGGTTGTTAGAAAGG------AGCCCTAACCCAGAAATGACAGCAAACAGCCATAATCATTATGTGGGGCTGAACCAGAGGAAGCCAGGCTGAGCCAAGAAGGTGGAAGTATCTGGAATGGCTCTCCAAATCCAAAGATTATCCATA--CTCTTTATCC-CTCCAGCAATGTGTAAAACCAGAAAGTGT--GAAACACTGGAGGTGGACATC-------TGGTTTTTATTTCTAGGATATCTTGA-TACATCTCATTACATTTCACAATCTGCACGGGAAGGAAAAGGATGGTAGAGAACATGGACATCCTGTCTCCCACTGCAAGGGCGTGGAACATGGTAAGTATACCCAGCTGTG----ACAGGACGTGGCAAGGCAACAAGATGCCTTGTGCCTGGCATAGGATTACAGCCAACAGCCCTTTTGGCCTGAATCCACCTCCTCAAGGGGAGGTCTCCATGGAATGACCATGATTCCCAACATGGCCAGAAAACCCATCTATCCCACTCATGGGGCAGATGATCAGAGGAGCTGCGCTTTTCCCTCCCGAGTAACTCAGACTGAAGTAGGGCCGGACAGGCCCACAAAAGGTAGCATGAGAGAAAGTGAAAGTGTGACACCTCTCTGTCACGTTGTAGAAGGAGACCTCGCCAGCATCATAGTCCAAGAAAATCCCCACCCGCTGAAGCGGGGTCCGCAGGGGGAGGGCAGTCATTGGGGAGGTAAGAGCCCAATATTCTTTCCCATACCACAAAGACACTGCCCAGAATCCATTCTGGGGGGCTGAGGTTACTCCACCTTTTCTGCACACTGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACCTCTACCTCCCAATAATGTCTCCCAGCGATGAAGCATGGAGAGCCCAAGACACAGGGAAACAGATTGAACCGCTCGGGGTTGTCAGGCAGGTCCTGTTGGAGGTAACTGTACCGCACTTGCCGCAGATTGTCAGAGAGGATCAGGCTGGGGTAGGCCGTGTCTGGGTCCAGAGTCACGTCCACTGCAGAGACACAA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2008296 1718 -   2996164 TGAACCCAATCCTACCAACACCCAGAAAGCAACAACAATGTA---------------------------------A---ACATCCATATTCACTTTATTTTTAAACAGAGGGGCATGTACCCAAAGAGAAGCAGGACTGAGAACCATCATGGGGGCTTGCTTGAAGTGATCTGCCCCAGCCTTCTGACTTCAGAGTGTCTCATGACCCAATGGCCATGGGGGTGGAGCTGCCCCTTGACAGTATGCACTTAAGAATGGTCAATTCCCCTATCCCCCAAAGGAAATGGAGAAAAGGAGCC-AAGAAGTCAATGAATCCCTGGAATGTTGTCCCAGAATCCTTCCAGGGATG---GTATACCACTGACCACCAGTCCACAAATGTGACTGGTAAGGGATCTAGTAACAGAGGATGGAGTTGGGCAGAATATTATCCTGGATGATATGCGCCCAGCAC-----TAGAATACACCTTTCATTAGAATGAAGGGAGCAGACAAAACCCTCAGAAAAGATAC-AAAGGC--AGAG---ACATTGATTAGAACATTATCTCATAACAGA-----GGT-G-GGGCCATTACCCACCATTATTGTAAAATAACTG-TAAC-TAACCAAAACACATACAGGCCTCTTTAATGGAGTTAATAGAACTATGGCAGATTGGGAATCAGGGGCAGAGGTACTGTTCCCAGATGGAAAAACTGGGATAAC-GGAGCCATGCT---GACAGGGCC---TTG-----TTCCAGTCTAGGTTGTTAGAAAGG------AGCCCTAACCCAGAAATGACAGCAAACAGCCATAATCATTATGTGGGGCTGAACCAGAGGAAGCCAGGCTGAGCCAAGAAGGTGGAAGTATCTGGAATGGCTCTCCAAATCCAAAGATTATCCATA--CTCTTTATCC-CTCCAGCAATGTGTAAAACCAGAAAGTGT--GAAACACTGGAGGTGGACATC-------TGGTTTTTATTTCTAGGATATCTTGA-TACATCTCATTACATTTCACAATCTGCACGGGAAGGAAAAGGATGGTAGAGAGCATGGACATCCTGTCTCCCACTGCAAGGGCGTGGAACATGGTAAGTATACCCAGCTGTG----ACAGGACGTGGCAAGGCAACAAGATGCCTTGTGCCTGGCATAGGATTACAGCCAACAGCCCTTTTGGCCTGAATCCACCTCCTCAAGGGGAGGTCTCCATGGAATGACCATGATTCCCAACATGGCCAGAAAACCCATCTATCCCACTCATGGGGCAGATGATCAGAGGAGCTGCGCTTTTCCCTCCCGAGTAACTCAGACTGAAGTAGGGCCGGACAGGCCCACAAAAGGTAGCATGAGAGAAAGTGAAAGTGTGACACCTCTCTGTCACGTTGTAGAAGGAGACCTCGCCAGCATCATAGTCCAAGAAAATCCCCACCCGCTGAAGCGGGGTCCGCAGGGGGAGGGCAGTCATTGGGGAGGTAAGAGCCCAATATTCTTTCCCATACCACAAAGACACTGCCCAGAATCCATTCTGGGGGGCTGAGGTTACTCCACCTTTTCTGCACACTGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACCTCTACCTCCCAATAATGTCTCCCAGCGATGAAGCATGGAGAGCCCAAGACACAGGGAAACAGATTGAACCGCTCGGGGTTGTCAGGCAGGTCCTGTTGGAGGTAACTGTACCGCACTTGCCGCAGATTGTCAGAGAGGATCAGGCTGGGGTAGGCCGTGTCTGGGTCCAGAGTCACGTCCACTGCAGAGACACAA-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1880187 1718 -   2157725 TGAACCCAATCCTACCAACACCCAGAAAGCAACAACAATGTA---------------------------------A---ACATCCATATTCACTTTATTTTTAAACAGAGGGGCATGTACCCAAAGAGAAGCAGGACTGAGAACCATCATGGGGGCTTGCTTGAAGTGATCTGCCCCAGCCTTCTGACTTCAGAGTGTCTCATGATCCAATGGCCATGGGGGTGGAGCTGCCCCTTGACAGTATGCACTTAAGAATGGTCAATTCCCCTATCCCCCAAAGGAAATGGAGAAAAGGAGCC-AAGAAGTCAATGAATCCCTGGAATACTGTCCCAGAATCCTTCCAGGGATG---GTATACCACTGACCACCAGTCCACAAATGTGACTGGTAAGGGATCTAGTAACAGAGGATGGAGTTGGGCAGAATATTATCCTGGATGATATGCGCCCAGCAC-----TAGAATACACCTTTCATTAGAATGAAGGGAGCAGACAAAACCCTCAGAAAAGATAC-AAAGGC--AGAG---ACATTGATTAGAACATTATCTCATAACAGA-----GGT-G-GGGCCATTACCCACCATTATTGTAAAATAACTG-TAAC-TAACCAAAACACATACAGGCCTCTTTAATGGAGTTAATAAAACTATGGCAGATTGGGAATCAGGGGCAGAGGTACTGTTCCCAGACGGAAAAACTGGGATAAC-GGAGCCATGCT---GACAGGGCC---TTG-----TTCCAGTCTAGGTTGTTAGAAAGG------AGCCCTAACCCAGAAATGACAGCAAACAGCCATAATCATTATGTCAGGCTGAACCAGAGGAAGCCAGGCTGAGCCAAGAAGGTGGAAGTATCTGGAATGGCTCTCCAAATCCAAAGATTATCCATA--CTCTTTATCC-CTCCAGCAATGTGTAAAACCAGAAAGTGT--GAAACACTGGAGGTGGACATC-------TGGTTTTTATTTCTAGGATATCTTGA-TACATCTCATTACATTTCACAATCTGCACGGGAAGGAAAAGGATGGTAGAGAACATGGACATCCTGTCTCCCACTGCAAGGGCGTGGAACATGGTAAGGATACCCAGCTGTG----ACAGGACGTGGCAAGGCAACAAGATGTCTTGTGCCTGGCATAGGATTACAGCCAACAGCCCTTTTGGCCTGAATCCACCTCCTCAAGGGGAGGTCTCCATGGAATGACCATGATTCCCAACATGGCCAGAAAACCCATCTATCCCACTCATGGGGCAGATGATCAGAGGAGCTGCGCTTTTCCCTCCCGAGTAACTCAGACTGAAGTAGGGCCGGACAGGCCCACAAAAGGTAGCATGAGAGAAAGTGAAAGTGTGACACCTCTCTGTCACGTTGTAGAAGGAGACCTCGCCAGCATCATAGTCCAAGAAAATCCCCACCCGCTGAAGCGGGGTCCGCAGGGGGAGGGCAGTCATTGGGGAGGTAAGAGCCCAGTATTCTTTCCCATACCACAAAGACACTGCCCAGAATCCATTCTGGGGGGCTGAGGTTACTCCACCTTTTCTGCACACTGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACCTCTACCTCCCAATAATGTCTCCCAGCGATGAAGCATGGAGAGCCCAAGACACAGGGAAACAGATTGAACCGCTCGGGGTTGTCAGGCAGGTCCTGTTGGAGGTAACTGTACCGCACTTGCCGCAGATTGTCAGAGAGGATCAGGCTGGGGTAGGCCGTGTCTGGGTCCAGAGTCACGTCCACTGCAGAGACACAA-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28325120 1718 -  71996105 TGAACCCAATCCTACCAACACCCAGAAAGCAACAACAATGTA---------------------------------A---ACATCCATATTCACTTTATTTTTAAACAGAGGGGCATGTACCCAAAGAGAAGCAGGACTGAGAACCATCATGGGGGCTTGCTTGAAGTGATCTGCCCCAGCCTTCTGACTTCAGAGTGTCTCATGATCCAATGGCCATGGGGGTGGAGCTGCCCCTTGACAGTATGCACTTAAGAATGGTCAATTCCCCTATCCCCCAAAGGAAATGGAGAAAAGGAGCC-AAGAAGTCAATGAATCCCTGGAGTATTGTCCCAGAATCCTTCCAGGGATG---GTATACCACTGACCACCAGTCCACAAATGTGACTGGTAAGGGATCTAGTAACAGAGGATGGAGTTGGGCAGAATATTATCCTGGATGATATGCGCCCAGCAC-----TAGAATACACCTTTCATTAGAATGAAGGGAGCAGACAAAACCCTCAGAAAAGATAC-AAAGGC--AGAG---ACATTGATTAGAACATTATCTCATAACAGA-----GGT-G-GGGTCATTACCCACCATTATTGTAAAATAACTG-TAAC-TAACCAAAACACATACAGGCCTCTTTAATGGAGTTAATAAAACTATGGCAGATTGGGAATCAGGGGCAGAGGTACTGTTCCCAGATGGAAAAACTGGGATAAC-GGAGCCATGCT---GACAGGGCC---TTG-----TTCCAGTCTAGGTTGTTAGAAAGG------AGCCCTAACCCAGAAATGACAGCAAACAGCCATAATCATTATGTGGGGCTGAACCAGAGGAAGCCAGGCTGAGCCAAGAAGGTGGAAGTATCTGGAATGGCTCTCCAAATCCAAAGATTATCCATA--CTCTTTATCC-CTCCAGCAATGTGTAAAACCAGAAAGTGT--GAAACACTGGAGGTGGACATC-------TGGTTTTTATTTCTAGGATATCTTGA-TACATCTCATTACATTTCACAATCTGCACGGGAAGGAAAAGGATGGTAGAGAACATGGACATCCTGTCTCCCACCGTAAGGGCGTGGAACATGGTAAGGATACCCAGCTGTG----ACAGGACGTGGCAAGGCAACAAGATGCCTTGTGCCTGGCATAGGATTACAGCCAACAGCCCTTTTGGCCTGAATCCACCTCCTCAAGGGGAGGTCTCCATGGAATGACCATGATTCCCAACATGGCCAGAAAACCCATCTATCCCACTCATGGGGCAGATGATCAGAGGAGCTGCGCTTTTCCCTCCCGAGTAACTCAGACTGAAGTACGGCCGGACAGGCCCACAAAAGGTAGCATGAGAGAAAGTGAAAGTGTGACACCTCTCTGTCACGTTGTAGAAGGAGACCTCGCCAGCATCATAGTCCAAGAAAATCCCCACCCGCTGAAGCGGGGTCCGCAGGGGGAGGGCAGTCATTGGGGAGGTAAGAGCCCAATATTCTTTCCCATACCACAAAGACACTGCCCAGAATCCATTCTGGGGGGCTGAGGTTACTCCACCTTTTCTGCACACTGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACCTCTACCTCCCAATAATGTCTCCCAGCGATGAAGCATGGAGAGCCCAAGACACAGGGAAACAGATTGAACCGCTCGGGGTTGTCAGGCAGGTCCTGTTGGAGGTAACTGTACCGCACTTGCCGCAGATTGTCAGAGAGGATCAGGCTGGGGTAGGCCGTGTCTGGGTCCAGAGTCACGTCCACTGCAGAGACACAA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2004582 1719 +   2316924 TGAACCCAATCCTACCAACACCCAGAAAGCAACAACAATGTA---------------------------------A---ACATCCATATTCACTTTATTTTTAAACAGAGGGGCATGTACCCAAAAAGAAGCAGGACTGAGAACCATCATGGGGGCTTGCTTGAAGTGATCTGCCCCGGCCTTCTGACTTCAGAGTGTCTCATGATCCAATGGCCATGGGGGTGGAGCTGCCCCTTGACAGTATGCACTTAAGAATGGTCAATTCCCCTATCCCCCAAAGGAAATGGAGAAAAGGAGCC-AAGAAGTCAATGAATCCCTGGAATACTGTCCCAGAATCCTTCCAGGGATG---GTATACCACTGACCACCAGTCCACAAATGTGACTGGTAAGGGATCTAGTAACAGAGGATGGAGTTGGGCAGAATATTATCCTGGATGATATGCGCCCAGTAC-----TAGAATACACCTTTCATTAGAATGAAGGGAGCAGACAAAACCCTCAGAAAAGATAC-AAAGGC--AGAG---ACATTGATTAGAACATTATCTCATAACAGA-----GGT-GAGGGCCATTACCCACCATTATTGTAAAATAACTG-TAAC-TAACCAAAACACATACAGGCCTCTTTAATGGAGTTAATAAAACTATGGCAGATTGGGAATCAGGGGCAGAGGTACTGTTCCCAGACGGAAAAACTGGGATAAC-GGAGCCATGCT---GACAGGGCC---TTG-----TTCCAGTCTAGGTTGTTAGAAAGG------AGCCCTAACCCAGAAATGACAGCAAACAGCCATAATCATTATGTCGGGCTGAACCAGAGGAAGCCAGGCTGAGCCAAGAAGGTGGAAGTATCTGGAATGGCTCTCCAAATCCAAAGATTATCCATA--CTCTTTATCC-CTCCAGCAATGTGTAAAACCAGAAAGTGT--GAAACACTGGAGGTGGACATC-------TGGTTTTTATTTCTAGGATATCTTGA-TACATCTCATTACATTTCACAATCTGCACGGGAAGGAAAAGGATGGTAGAGAACATGGACATCCTGTCTCCCACTGCAAGGGCGTGGAACATGGTAAGGATACCCAGCTGTG----ACAGGACGTGGCAAGGCAACAAGATGCCTTGTGCCTGGCATAGGATTACAGCCAACAGCCCTTTTGGCCTGAATCCACCTCCTCAAGGGGAGGTCTCCATGGAATGACCATGATTCCCAACATGGCCAGAAAACCCATCTATCCCACTCATGGGGCAGATGATCAGAGGAGCTGCGCTTTTCCCTCCCGAGTAACTCAGACTGAAGTAGGGCCGGACAGGCCCACAAAAGGTAGCATGAGAGAAAGTGAAAGTGTGACACCTCTCTGTCACGTTGTAGAAGGAGACCTCGCCAGCATCATAGTCCAAGAAAATCCCCACCCGCTGAAGCGGGGTCCGCAGGGGGAGGGCAGTCATTGGGGAGGTAAGAGCCCAATATTCTTTCCCATACCACAAAGACACTGCCCAGAATCCATTCTGGGGGGCTGAGGTTACTCCACCTTTTCTGCACACTGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACCTCTACCTCCCAATAATGTCTCCCAGCGATGAAGCATGGAGAGCCCAAGACACAGGGAAACAGATTGAACCGCTCGGGGTTGTCAGGCAGGTCCTGTTGGAGGTAACTGTACCGCACTTGCCGCAGATTGTCAGAGAGGATCAGGCTGGGGTAGGCCGTGTCTGGGTCCAGAGTCACGTCCACTGCAGAGACACAA-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1888992 1716 -   3067355 CGAACCCAATCCTACCAACACCCAGAAAGCAACAACAATGTA---------------------------------A---ACATCCATATTCACTTTATTTTTAAACAGAGGGTCATGTACCC--AGAGAAGCAGGACTGAGAACCATCATGGGGGCTTGCTTGAAGTGATCTGCCCCAGCCTTCTCACTTCAGAGTGTCTCATGATCCAATGGCCATGGGGGTGGAGCTGCCCCTTGACAGTATGCACTTAAGAATGGTCAATTCCCCCATTCCCCAAAGGAAATGGAGAAAAGGAGCC-AAGAAGTCAATGAATCCCTGGAATATTGTCCCAGAATCCTTCCAGGGATG---GTATACTACTGACCACCAGTCCACAAATGTGACTGGTAAGGGATCTAGTAACAGAGGATGGAGTTGGGCAGAATATTATCCTGGATGATATGCACCCAGCAC-----TAGAATACACCTTTCATTAGAATGAAGGGAGCAGACAAAACCCTCAGAAAAGATAC-AAAGGC--AGAG---ACATTGATTAGAACATTATCTCATAACAGA-----GGT-G-GGGCCATTACCCACCATTATTGTAAAATAACTG-TAAC-TAACCAAACCACATACAGGCTTCTTTAATGGAGTTAGTAAAACTATGGCAGATTGGGAATCAGGGGCAGAGGTACTGTTCCCAGATGGAAAAACTGGGATAAA-GGAGCCATGCT---GACAGGGCC---TTG-----TTCCAGTCTAGGTTGTTAGAAAGG------AGCCCTAACCCAGAAATGACAGCAAATAGCCATAATCATTATGTGGGGCTGAACCAGAGGAAGCCAGGCTGAGCCAAGAAGGTGGAAGTATCTTGAATGGCCCTCCAAATCCAAAGATTGTCCATA--CTCTTTATCC-CTCCAGCAATGTGTAAAACCAGAAAGTGT--GAAACACTGGAGGTGGACATC-------TGGTTTTTATTTCTAGGATATCTTGA-TACATCTCATTACATTGCACAATCTGCACAGGAAGGAAAAGGATGGTAGAGAACATGGACATCCTGTCTCCCACTGCAAGGGCGTGGAACATGGTCAGGATACCCAGCTGTG----ACAGGACGTGGCAAGGCAACAAGATGCCTTGTGCCTGGCATAGGATTATACCCAACAGCCCTTTTGGCCTGAATCCACCTCCTCAAGGGGAGGTCTCCATGGAATGACCATGATTCCCAACATGCCCAGAAAACCCATCTATCCCACTCATGGGGCAGATGATCAGAGGAGCTGCGCTTTTCCCTCCCGAGTAACTCAGACTGAAGTAGGGCCGCACAGGCCCACAAAAGGTAGCATGAGAGAAAGTGAAAGTGTGACACCTCTCTGTCACGTTGTAGAAGGAGACCTCGCCAGCATCATAGTCCAAGAAAATCCCCACCCGCTGAAGCGGGGTCCGCAGGGGGAGGGCAGTCATTGGGGAGGTAAGAGCCCAATATTCTTTCCCATACCACAAAGACACTGCCCAGAATCCATTCTGGGGGGCTGAGGTTACTCCACCTTTTCTGCACACTGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACCTCTACCTCCCAATAGTGTCTCCCAGCGATGAAGCATGGAGAGCCCAAGACACAGGGAAACAGATTGAACCGCTCGGGGTTGTCAGGCAGGTCCTGTTGGAGGTAACTGTACCGCACTTGCCGCAGATTGTCAGAGAGGATCAGGCTGGGGTAGGCCGTGTCTGGGTCCAGAGTCACGTCCACTGCAGAGACACAA-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171411055 1678 - 171630274 TGAACGCCATCCTACCAACATCCAGAAAGCAACAACA---TA---------------------------------A---ACATCCATATTCACTTTATTTTTAAACAGAAGAGCATGTACCCAAAGAGAAGCAGGACTGAGAACCAACACGGGGGCTTGCTGGAAGGGATCCGCCCCAGCCTTCTGACTTCAGAGTGTCTCAAGCTCCAGTGGCCATGGGGATGGAGCTGCCCCTTGA---TATGCACTTTAGAAAGGTCAATTTCCCCATCCCCCAAAAGAAACGGAGAAAAAGAGGT-AAGAGGTCAATGAATCCCTGGAAGACTGTCCCAGCATCCTTTCAGGGATG---GTGTATGACCGACCGCCAGTCCACAAATCTGACTGGTAAGGGATTTAGTAACACCAAATGGAGCTGGGCAGAGTATCAGCCTGGATGACATACACCCAGCAC-----TAGAATACACCTTTCATTAGAACGAAGGGAG----CAAAGCCCTCAGAAAAGATAC-AAAGGC--AGAG---ACATTGATTAGAACATTATCTCATAACACA-----GGTGG-GGGCCATTACCCACTGTTATTGTAAAAGAACTG-TAAC-TAACCAAAACACATATAGGCTTCTTTAATGGAGTTAGTAAAACTATGGCAGGTTGGGAATC-GGGGCAAAGGTACTGTTCCCAGGTGGAAAAACTGGGAGAAAGGGAGCCGTGCG---GATAGGGCC---TTG-----TTCCAGTCTAGGCTGTCAGAGAGG------AGCCCTAGCCCAG-AATGACAGCAAATAGCCATGATCATTATGTGGGGCTGAACCAGAGGAAACCAGGCTGAGCCAAGAAGGTGTGAGTATCTTGAATGGCTCTCCAAATGCAAAGATTATCCATA--CTCTTTATCC-CCTCCATCAAGTGTAAAACCGGAAAGTGT--GACACACTGGAGGT-----------------------------GGACATCTGGA-TACGTCTCACGGCATCTCACAATCTGCAT-GGAGGGAAGAGGGTG--GGAGAACATGGACATCCTCTCTCCCACTGCAAGGGTGTTGA--TGGGTAAGGAGACCCATCTGTA----ATAGGACGTGGCAAGGCAACAGGATGCCTCGTGCCTGGCGTAGGATTTCAGCCAACAGCCCTTTTGGCCTGAATTCA---CCTCAAGGGGAGGTCTCCATGGAATGACCGTGATTCCCAACATGGCCAGAAAACCCATCTATCCCACTCATGGGGCAGATGATGAGAGGAGCTGCGCTTTTCCCTCCCGAGTAACTGAGGCTGAAGTAGGGCCGCACAGGCCCACAGAAGGTAGCGTGAGAGAAAGTGAAGGTGTGACACCTTTCTGTCACGTTGTAGAAGGAGACCTCACCAGCATCATAGTCCAAGAAGACCCCCACCCGCTGGAGAGGGGTCCGCAGGGGGAGGGCAGTCATTGGGGAGGTAAGAGCCCAGTATTCCTTCCCATACCACAAGGACACTGCCCAGAATCCGTTCTGGGGGGCCGAGGTTACGCCGCCTTTTCTGCACACTGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACCTCTACCTCCCAATAATGTCTCCCAGCGATGAAGCATGGCGAGCCCAAGACACAGGGAAACAGATTGAACCGCTCGGGGTTGTCAGGCAGGTCCTGCTGGAGGTAGCTGTACCGGACTTGCCGCAGATTGTCAGAGAGGATCAGGCTGGGGTAGGCCGTGTCTGGGTCCAGAGTCACGTCCACTGTGGAGACACAA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            237904 1685 -    375362 TGAACCCCATCCGACCAACACCCAGAAAGCAACAACA---TA---------------------------------A---ACATCCATATTCACTTTATTTTTAAACAGAGGAGCATGTACCCAAAGAGAAGCACAACTGAGAACCACCACTGGGGCTTGCTGGAAGTGATCCGCCCCAGCCTTCTGACTTCAGAGTGTCTCAAGTTCCAGTGGCTGTGGGGATGGAGCTGCCCCTTGA---TACGCACTTTAGAAAGGTCAATTTCCCCATCCCCCAAAAGAAATGGAGAAAAAGAGGT-AAGAGGTCAATGAATCCCTGGAAGACTGTCCCGGCATCCTTTCAGGGATG---GTGTATGACCGACCATCAGTCCACAAATGTGACTGCTAAGGG-TCTAGTAACAGCAAATGGAGCTGGGCAGAGTATTAGCCTGGATGACATGCACCCAGCACTAGATTAGAATACACCTCTCATTAGAACGAATGGAG----CAAAGCCCTCAGAAAAGATAC-AAAGGC--AGAG---ACATTGATTAGAACATTATCTCCTAACAGA-----GGT-G-GGGCCATTACCCACCATTATTGTAAAAGAACTG-TAAC-TAACCAAAACACATATAGGCTTCTTTAATGGAGTTAGTAAAACTATGGCAGGTTGGGAATC-GGGGCAAAGGTACTGTTCCCAGGTGGAAAAACCAGGAGAAAGGGAGCCGTGCG---GATAGGGCC---TTG-----TTCCAGTCTAGGCTGTCAGAAAGG------AGCCCTAGCCCAG-AATGACAGCCAATAGCCGTGATCATTATGTAGGGCTGAACCAGAGGAAACCAGGCTGAGCCAAGAAGGTGTGAGTATCTTGAATGGCTCTCCAAATCCAAAGATTATTCATA--CTCTTCATCC-CCTCCATCAAGTGTAAAACCACAAAGTGT--GACACACTGGAGGC-----------------------------GGACTTCTGGA-TACGCCTCATGGCATCTCACAATCTGCAT-GGAGGGAAGAGGGAGGTGGAGAACATGGACATCCTGTCTCCCACTGCAAGGGTGTGGAACGTGGTAAGGAGACCCACCCGTG----ACGGGGTGTGGCAAGGCAACAAGATGTCTCGTGCCTGGCGTGGGATTTCAGCCAACAGGCCTTTTGGCCTGAATTCA---CCTCAAGGGGACGTCTCCATGGAATGACCGTGATTCCCAACATGGCCAGAAAACCCATCTATCCCACTCATGGGGCAGATGATCAGAGGAGCTGCGCTTTTCCCTCCTGAGTAACTCAGGCTGAAGTAGGGCCGCACAGGACCACAAAAGGTAGCATGAGAGAAAGTGAAGGTGTGACACCTCTCTGTCACGTTGTAGAAGGAGACCTCACCAGCATCATAGTCCAAGAAAATCCCCACCCGCTGGAGAGGGGTCCGCAGGGGGAGGGCAGTCATTGGGGAGGTAAGAGCCCAGTATTCTTTCCCATACCACAAGGACACTGCCCAGAATCCGTTCTGGGGGGCTGAGGTTACTCCGCCTTTTCTGCACACTGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACCTCTACCTCCCAATAATGTCTCCCAGCGATGAAGCATGGAGAGCCCAAGACACAGGGAAACAGATTGAACCGCTCGGGGTTGTCAGGCAGGTCCTGCTGGAGGTAGCTGTACCGGACTTGCCGCAGATTGTCAGAGAGGATCAGGCTGGGGTAGGCTGTGTCTGGGTCCAGAGTCACGTCCACTGTGGAGACACAA-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      237107 1661 -    373274 TGAACCCCATCCTACCAACACCCGGAAAGCAACAACA---TA---------------------------------A---ACATCCATATTCACTTTATTTTTAAACAAAGGAGCATGTACTCAAAGAGAAGCAGGACTGAGAACCATCACCGGGGCTTGCTGGAAGTGATCCACCCCAGCCTTCTGACTTCAGAGTGTCTCAAGCTCCAATGGCCATGGGGATGGAGCTGCCCCTTGA---TACACACTTTAGAAAGGTCAATTTCCCCATCCCCCAAAAGAAACGGAGAAAAAGAGGT-AAGAGGTCAATGAATCCCTGGAAGACTGTCCCAGCATCCTTTCAGGGATG---GTGTGTGACCGACCACCAGTCCACAAATGTGACTGGTAAGGGATCTACTAACAGCAAATGGAGCTGGATAGAGTACTAGCCTGGATGACATGCACCCAGCAC-----TGGAATACACCTTTCCCTAGAACGAAGGGAG----CAAAGCCCTCAGAAAAGATAC-AAAAGC--AGAG---ACATTGATTAGAACATTATCTCATAACAGA-----GGT-G-GGACCATTACCCACCGTTATTGTAAAAGAACTG-TAAC-TAACCAAAACACATATAGGCTTCTTTAATGGAGTTAGTAAAACTATGGCAGGTCGGGAATT-GGGGCAAAAGCACTGTTCCCAGGTGGAAACACCGGGAGAAAGGGAGCCGTGTG---GATAGGGCC---TTG-----TTCCAGTCTAGGCTGTCAGAGAGG------AGCCCTAGCCCAG-AATGACAGCAAATAGCCATGATCATTATGTGGGGCTGAA--------------------CCAAGAAGGTGTGAGTATCTTGAATGGCTCTCCAAATCCAAAGATTATCCATA--CTCTTTATCC-CCTCCATCAAGTGTAAAACCAGAAAGTGT--GACACACTGGAGGC-----------------------------GGACATCTGGA-TACGTCTCATGGCGTCTCACAATGTGCAT-GGAGGGAAGAGGGTGGTAGAGAACATGGACATCCTGTCTCCCACTGCAAGGGTGTGGAACATGGTAAGGAGACCCATCTGTG----ACGGGATGTGGCAAGGCAACAAGATGCCTTGTGCCTGGCGTAGGATTTCAGCCAACAGCCCTTTTGGCCTGAATTTA---CCTCAAGGGGAGGTCTCCATGGAATGACCGTGATTCCCAACATGGCCAGAAAACCCATCTATCCCACTCATGGGGCAGATGATCAGAGGAGCTGCGCTTTTCCCTCCCGAGTAACTCAGGCTGAAGTAGGGCCGCACAGGCCCACAAAAGGTAGCATGAGAGAAAGTGAAGGTGTGACACCTCTCTGTCACGTTGTAGAAGGAGACCTCACCAGCATCATAGTCCAAGAAAATCCCCACCCGCTGGAGAGGGGTCCGCAGGGGGAGGGCAGTCATTGGGGAGGTAAGAGCCCAGTATTCTTTCCCATACCACAAGGACACTGCCCAGAATCCGTTCTGGGGGGCTGAGGTTACTCCGCCTTTTCTGCACACTGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACCTCTACCTCCCAATAATGTCTCCCAGCGATGAAGCATGGAGAGCCCAAGACACAGGGAAACAGATTGAACCGCTCGGGGTTGTCAGGCAGGTCCTGCTGGAGGTAGCTGTACCGGACTTGACGCAGATTGTCAGAGAGGATCAGGCTGGGGTAGGCCGTGTCTGGGTCCAGAGTCACGTCCACTGTGGAGACACAA-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      170192 1703 -    285216 TGAACCCCATCCTACCAATACCCAGAAATCAACAACA---TA---------------------------------A---ACATCCATATTCATTTTATTTTTAAACAGAGGAGCATGTACCCAAAGAGAAGCAGGACTGAGAACCATCACGCGGGCTTGCTGGAAGTGATCCGCCCCAGCCTTCTGACTTAAGAGTGTCTCAAGCTCCAATGGCCATGGGGATGGAGCTGCCCCTTGA---TACGCACTTTAGAAAGGTCAATTTCCCCATCCCCCAAAAGAAATGGAGAAAAAGAGGT-AAGAGGTCAATGAATCCCTGGAAGACTGTCCCAGCATCCTTTCAGGGACA---GTGTATGACCGACCACCAGTCCACACATGTGACTGGTAAGGGATCTAGTCACAGCAAATGGAGCTGGGCAGAGTATCAGCCTGGATGACATGCACCCAGCAC-----TAGAATACACCTTTCATTAGAACAAAGGGAG----CAAAGCCCTCAGAAAAGATAC-AAAGGC--AGAG---ACATTGATTAGAACATTATCTTATAACAGA-----GGT-G-GGGCCATTACCCACCGTTATTGTAAAAGAACTG-TAAC-TAACCAAAACACATATAGGCTTCTTTAATGGAGTTAGTAAAACTATGGCGAGTTGGGAATA-GGGGCAAAAGTACTGTTCCCAGGTGGAAAAACTGGGAGAAAGGGAGCCGTGCG---GATAGGGTC---TTG-----TTCCAGTCTAGGCTGTCAGAGAGG------AGCCCTAGCCCAG-AATGACAGTGAATAGCCATGATCATTATATGGGGCTGAACCACAGAAAACCAGGCTGAGCCAAGAAGGTGTGAGTATCTTGAACGGCTCTCCAAATCCAAAGATTATCCATA--TGCTTTATCC-CGTCCATCAAGTGTAAAACCAGAAAGTGT--GACACACTGGAGGCAGACATC-------TGGTTTTTATTTCTAGGACATCTGGA-TACGTCTCATGGCATCTCACAATCTGCAT-GGAGGGAAGAGGGTGGTGGAGAACATGGACATCCTGCCTCCCACTGCAAGGGTGGGGAACATGGTAAGGAGACCCATCTGTG----ACGGGATGTGGCAAGGCAACAGGATGCCTCGTGCCTGGCGTAGGATTTCAGCCAACAGCCCTTTTGGCCTGAATTCA---CCTCAAGGGGAGGTCTCCATGGAATGACTGTGATTCCCAACATGGCCAGAAAACCCATCTATCCCACTCATGGGGCAGATGATCAGAGGAGCTGCGCTTTTCCCTCCCGAGTAACTCAGGCTGAAGTAGGGCCGCACAGGCCCACAAAAGGTAGCATGAGAGAAAGTGAAGGTGTGACATCTCTCTGTCACGTTGTAGAAGGAGACCTCACCAGCATCATAGTCCAAGAAAATCCCCACCCGCTGGAGAGGAGTCCGCAGGGGCAGGGCAGTCATTGGGGAGGTAAGAGCCCAGTATTCTTTCCCATACCACAAGGACACTGCCCAGAATCCGTTCTGGGGGGCTGAGGTTACTCCGCCTTTTCTGCACACTGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACCTCTACCTCCCAATAATGTCTCCCAGCGATGAAGCATGGAGAGCCCAAGACACAGGGAAACAGATTGAACCGCTCAGGGTTGTCAGGCAGGTCCTGCTGGAGGTAACTGTACCGGACTTGCCGCAGATTGTCAGAGAGGATCAGGCTGGGGTAGGCCGTGTCTGGGTCCAGAGTCACGTCCACTGTGGAGACACAC-
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      974640 1717 -   3516910 TGAACCCAATCCTACCAAGACCCGGAAAACAACAACAATGTA---------------------------------A---ACATCCATATTCACTTTATTTTTAAACAGAGGGGCATGTACCCACAGAGAAGCAGGACTAAGAACCATCATGGGGGCTTGCTCAAAGTGATCTGTCCTAGCCTTCTGACTCCAGAATGCCTTATGTTTCAATGGCCATGGGGATGGAGCTGCCCCTTAATGATATACACATTAGAAAAGTCAATTCCCCCATTCTCCAAAGGAGATGGAGAAAAGGAGGC-AAGAAGTCAATGAATCCCTGGAATACTGCACCAGAATTCTTCCACGGATG---GCATATGACTGACCACCAGTCCACAAATGTGACTGGGAA-----------ACTGTGGACGGAGTTGGGTGGAATATTATCCTGGATGATGTGCACCCAGCAT-----TGGGATACACCTTTCATTAGAATAAAGGGAGCAGAGAAAGCCCTCAGAAAAGATAC-AAAGGCAAAGAG---ACATTGATTAGAACATTATCTCATAACAGA-----AGT-G-GGGCCATTTCCCACCATTATTGTAAAATAACTG-TAAC-TAACCAAAACACATACAGGCCTCTTTAATGGAGTTAATAAAATTACAGCAGATGGGGAATT-GGGGTAGAGGTACTGTTCCCAGAAGGAAAAACTGGGATAAAGGGAGCCTTGCT---CCCAGGGCC---TTGTATAATTCCATTCTAGGTTAGCAAAAAGG------AGCCCTAGTCCAGAAATGACAGCAATTACCCATTATCACTACGTGGGGCTGAACCAGGGGAATCCAGGCTGACCCAAGAAACTGTAAGTATCTTGTGTGGCTCTCCAAATCCAAAGATTATCCATA--CTCTTTATCCACTCCAGGAACATGTAAAATCACAAAGTGT--GAAATACTGGAGGTGGACATT-------TGGTTTTTATTTCTGGGTAATCCTGA-TACTTCTCATTACATCTCACAATGTGTGTGGGAAGGAAAAAAATGGTAGAGAACACAGATGTCCTGTCTCTCACTGCAAGGGCATGGAACATGGTAAGGATATCCAGCAGTGATAGACAGGAAGTAACAAGACAACAAGATGCCTTGTGCCTGACATAGGATTATAGCCAATAGCTC--GTGGCCTTAGTTCACCTCCTTAAGGAGAGGTCTCCATGGGATGACCATGATTCCCAACATGGCCAGAAAATCCATCAATCCCACTCATGGGACAGATGATCAGCGGAGCTGCACTCTTCCCTCCCGAGTAACTCAGACTGAAGTAGGGCCGGACAGGCCCACAGAAGGTAGCGTGAGAGAAAGTAAAGGTGTGACACCTCTCTGTCACATTGTAGAAGGAGACCTCACCAGCATCATAGTCCAAGAAAATCCCCACCCTCTGGAGAGGGGTCCGCAGGGGAAGGGCAGTCATTGGGGAGGTAAGAGCCCAATATTCTTTCCCATACCACAATGACACTGCCCAGAATCCATTCTGGGGAGCCGAGGTTACTCCACCTTTTCTGCACACTGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACCTCTACCTCCCAATAATGTCTCCCAGCGATGAAGCATGGAGAGCCCAAGACACAGGGAAAGAGATTGAACCGCTCAGGGTTGTCAGGCAGGTCCTGTTGGAGGTAACTGTACCGAACTTGCCGCAGATTATCAGAGAGGATCAGGCTGGGGTAGGCCGTGTCTGGGTCCAGCGTCACGTCCACTGCAGAGACACAA-
i proCoq1.NW_012147953v1   I 72 I 123
s otoGar3.GL873742           1544928 1694 -   2232465 TGAACCCAATCCCAACAAGACCCAGAA---AACAACAATATA---------------------------------A---ACATCCATATTCACTTTATTTTTAAACAGAGGATCATGTACCCACTGAGAAGCAGGACTAAGAACCATCATGAGGGCTTGTTCAAAGTGATCTGCCCTTGTCTTCTGACTAC--AATGCCTCACATTCCAATGGCCTTGGGGA------TACCCCTTGAGG----ACACATTGGAAAGGCCAATTCCCCCATTTCTCAAAGGACATAGAGAAAAGGAGGC-AAGAAGTCAATGAATGCCTAGAATACTACCCCAGAATTCTTCCAGGGATA---GCATATGACTGACCGCCAGTCCAC-AATGTGACTGGGAA-----------AC--TGGACGGAGTTGGGTAGAACATTATCTTTGATGATGTGCACCCAGCAC-----CAGGATACATCTTCCATTAGAACAAAGGGAGCAGATAAAGCCCTCAGAAAAGATACAAAAGGCAAAAAG---ACACTGATTAGAA------ATTATAACAGAGATATGAT-G-GGGCCATTTCCCACCATTCCTGTAAAATAATTG-TAAT-TAAC--AAAAACATACAGGCCTCTTTAATGGAATTAATAAAACTACAGCAGATGGGGAATT-AGGGTAGAGGTACTGTTCCCAGAAGGAAAATCTGGGATAAAGGGAACCATGCTGACAACAGGGCC---TTGTATAGTTCCACTCTAGATTTTCAGAAAGG------AGGCCTATTCCAGAAATGACAGCAAATACCCACAATCACTATGTGGAGCTGAACCAAAGGAAGCCAGGATGACCCAAGAAGGTGTCAGTGTCTTAAGTGGCTCTCTAAATCCAAAGATTATCCATA--TTGTTTATCCCCTCCAGAAATGTGTAAAATCACAAA--GT--GAAACACTGGAGG----CGTT-------TTGTTTTTATTTCTGGGAAAACCTGATTATTTCTCCTTACATCTCACAATTTGTATAGGAAGGAAAAAAATGGCAGAGAACATGGACATCCTGTCTTTCACTGCAAGGGCATGGAACGTGGTAAGGATATCCAGTGGTGATGAACAGGAAGTGGCAAG---ACAAGATGCCTTGTGCCTGGTGTAGGATTATAGCCAACAGCTCTTGTGGCCTGAGTTCACCTCCTCAAGGAGAAGTCTCCATGGAATGACCATGATTCCCAACATGGCCAGAAAAGCCATCAATCCCACTCATGGGGCAGATGATCAGTGGAGCTGCACTCTTCCCCCCTGAGTAACTTAGACTGAAGTAGGGCCGGACAGGCCCACAGAAGGTAGCATGAGAGAAAGTAAAGGTGTGACACCTCTCTGTCACATTGTAGAAGGAGACCTCGCCAGCATCATAGTCCAAGAAAATCCCCACCCGCTGGAGGGGGGTCCGCAGGGGGAGGGCAGTCATTGGGGATGTAAGAGCCCAATATTCCTTCCCATACCACAATGACACTGCCCAGAATCCATTCTGGGGAGCTGAGGTTACTCCACCTTTTCTGCACACTGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACCTCTACCTCCCAATAATGTCTCCCAGCGATGAAGCATGGAGAGCCCAAGACACAGGGAAACAGATTGAACCGTTCAGGGTTGTCAGGCAGGTCCTGTTGGAGGTAACTGTACCGCACTTGCCGCAGATTATCAGACAGGATGAGGCTGGGGTAGGCCGTGTCTGGATCCAGAGTCACATCCACTGCAGAGACAAGA-
i otoGar3.GL873742         I 2 C 0
s canFam3.chr35             25904310 1695 +  26524999 TGAACCCAATCCTACCAAGACCCAGAAaacaacaacaatgtaaaaaaaaagaaaaacaacaacaacaatgtaaaca---acatccacaaTCACTTTATTTTCAAACAGAGGGTCATGTACCGGAAGGGAAGCAGGACTAAG--CCATTGTGGGGGCTTGCTTGAAGTGATCTGCCCTTGCCTTCTGGCCCCAGAACACCCCATGACCCAATGGCTATGGGGA------TGCCCCTTGATGGTGCACGTATTAGAAAGGTCAGTTCCCCCACTCCCCAAA-GAAGTGGAGAAAAGAAGGCAAAAAAGTCAATGAGTCCCTGGAATAGTGCCTCAGAATCACTGCAGGGACA---AACTGTCA---------GGTCCACATATGTGAGTGGGAGGGGATCTAGGAACAATGGACGGTGTTGG-CAGGAAACTATCCTGGATGACGTGCACCTGACAC-----CAGGATACACCTTTCATTAGAATGAAGGGAGCA-ACAGAGCCCTCAGAAAAAATAC-AGAGGC--AAAGAGTACATTGATTAGAACATTATCTCATAACAGA-----GGT-A-AGGCCATTTCCCACCATTATTGTAAAATAACTGTTAAC-TAATCAAAACACATACAGGCCTCTTTAATGGAGTTAATAAAACTACAGTGAATGGG-----------------------------------AATTGGGATAGAGGGAGACATGCT---GACAGGGCCAGGTAG-----TTCCACTCTAGGTTCTTAGAAAGG------AGCCCTGGTCCAGAGA--ACAGCACACATCCACGACCACTATGTGGGGCTGGACCAGAGGAAGCCAGGCTGAGCCACGGTG----AAGGGTCCTGAATGGCTCTC------CAGGGATTATCCATA--CTCTGTATCCCCTCCAGTAATGGGTAAAACCA-AAAGTGTTGGAAACACTGAAGGTGGACATC-------TGGTTTGTAATTCTGGGCCATCTTGA-----TCTCCTTACATCTGACCATCTGCATGGGGAGGGAAAGGACAGTACAGAGTGTGGACACCCTGTCTCCCACTGCAGGGGCAGAGAAAGTGGGAAGGACATCCAGCTGTGATAAGCAGGAAAAGGCAAGGCAACAAGACACCTTATGCCTGGGGTAGGATCATGGCCAACAGCCCTCTAGGCCTGAGTTCACCTCCTCAAGGGGAGGTCTCCATGGAATGAGCGTGATTACCAACATGGCCAGAAAACCCATCGATCCCACTCATGGGGCAGATGATGAGAGGGGCTGCGCTCTTCCCTCCCGAGTAACTCAGGCTGAAGTAAGGCCGGACAGGCCCACAGAAGGTGGCATGAGAGAAAGTAAATGTGTGACACCTCTCTGTCACGTTGTAGAAGGAGACCTCACCAGCATCATAGTCCAAGAAAACCCCCACCCGCTGGAGAGGGGTGCGCAGGGGTAGGGCAGTCATCGGGGAGGTAAGAGCCCAGTACTCCTTCCCATACCACAAGGACACTGCCCAGAATCCATTCTGGGGGGCCGAGGTTACTCCACCTTTTCTGCATACGGAGTCTTCACAGACACCTATGGTCCACTTGGCTTTATCTCCCACTTCTACCTCCCAGTAATGTCGCCCAGCGATGAAACATGGAGAGCCCAAGACACAGGGAAACAGATTGAACCGCTCAGGGTTGTCAGGCAGGTCTTGCTGGAGGTAACTGTACCGCACCTGCCGCAGGTTGTCAGAAAGGATCAAGCTAGGGTAGGCTGTGTCCGGGTCTAGAGTCACGTCCACTGTGGAGACACAC-
i canFam3.chr35            I 2 I 10
s dasNov3.JH561790             58119 1596 -    302817 CGATCCCAACCCCACTAAGACTGGGGAGACGACGACAGTGTA---------------------------------AACGACATCCACACTCACTTTATTTTTACACAGAGGGGCATCTGCCCCAGGAAGAGCAGGGCTGAGAAACA---CGGGGGCTTGCCCGAAAT-----GCCCC--------------------------GAGCCGACGGCTGT-GGGCTGGAGCTGCCCCTAGGCGGCACACACCCAAG---GGCTTATGCCCCCCCTCCACCAAGGAGATGGA-AAAAGGAGGC-AGCACGTCACTGCA-CCCCGGAACAGCACCCCAGAAGGCTCCCAGGGATGGGCGTGACCGACTGACCGCCAGTCCACAGACGAGAC-GGCAGGG--CCTAGCAACAGTGGACGGTGCCCGACAGAAAAT----------------------GCAC----------------TTTCATTGGAACG----GAGCAGACAAAGCGCCCGGAACAGATAC-AGAGGC--AAATAGCACGCTGATTAGAACATTATCTCCAAACAGA-----GGT-G-CGGTTCTCTCCCACCAGGATTGTAAAATAACCG---AC-TAACCAAAACACATACACACCTCCTTCACGGCGTGAGGAAAGCCACGGCAGGT-GGGGGCCAGGGGTAGAGGTGCTATCCCCAGAAGGGAAACCCGGGCCGAAGGGGGTCACAC----GACAGGGCC---TCG--------CAGTTCTG-------------------CTCCCCGGCCCAGAAACGACAGCAAATACCCACGGTCACCACGTCGGGCTGAACCAGAGGA------GCTGGGCCAGGAAGGT----GTTGCTCGAACGGCTTTCCAAATCCAAACACT-TCCGTC--CTCTCTAGCCACTCCAGGAATGTGTAAAACCA-AAGGGGT--GAAACACTGGAGGTGGACATCTCTCGTGTTTTTTTTATTTCGGGGCAATCT-GA-TACTGCTCGTTACATCTCACGATTTGCCTGGGAAGAGAGAGGACAGTAGAGAACACGGGCAC------------------------AGAAATGGGAAGGCTATCCAGCTGCGGTGGACAGGAGGTGGCAAGG----AATTTGCCCTGGGCTTGGGGTAGGACTGTGGCTGGCAGCCGATTTAGTTCGTCTCC----TCTCAAGGGGAGGTCTCCATGGAGTGGCCGTGACCCGCAACGTGGCCAGAAAACCCATCGATCCCGCTCATGGGGCAGATGACCAGAGGAGCTGCGCTCTTCCCTCCCGAGTAGCTCAGGCTGAAGTAGGGCCGCACCGGCCCGCAGAAGGTAGCGTGGGAGAAGGTGAAGGTGTGACACCTCTCCGTCACGTTGTAGAAGGAGACCTCTCCAGCGTCGTAGTCCAGGAAAATCCCCACCCGCTGGAGAGGGGTCCGCAGTGGGAGGGCAGTCATCGGGGAGGTCAGAGCCCAGTACTCTTTCCCATACCACAGCGACACAGCCCAGAATCCGTTCTGGGGGGCCGAGGTCACGCCACCTTTTCTGCACACGGAGTCTTCACAGACACCTATGGTCCACTTGGCCTTATCGCCCACCTCCACCTCCCAGTAATGTCTCCCAGCGATGAAGCACGGAGAGCCCAAGACACAGGGGAAAAGATTGAACCGCTCGGGGTTGTCAGGCAGGTCCTGCTGGAGGTAACTGTACCGCACTTGCCGCAGGTTATCGGAGAGGATCAGGCTGGGGTAGGCCGTGTCTGGGTCCAGAGTTACGTCCACTGCAAAGACACAGA
i dasNov3.JH561790         C 0 C 0

a score=559776.000000
s hg38.chr6_GL000254v2_alt    170434 61 +   4827813 -GGAAGACAGTCAGCC-GTGGGCCAGGAGAGCCTATTT---TAGAACACCCAGCGCCTTTCTACTA
s panTro5.chr6              29157933 61 + 175400573 -AGAAGACAGTCAGCC-GTGGGCCAGGAGAGCCTATTT---GAGAACACCCAGCGCCTTTCTACTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29392102 61 + 173848474 -AGAAGACAGTCAGCC-ATGGGCCAGGAGAGCCTATTT---GAGAACACCCAGCGCCTTTCTACTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5192592 61 +   6154872 -AGAAGACAGTCAGCC-GTGGGCCAGGAGAGCCTATTT---TAGAACACCCAACGCCTTTCTACTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74191281 61 + 122973662 -AGAAGACAGTCAGCC-GCGGGCCAGGAGAGCCTATTC---TAGAACACCCAGCGCCTTTCTACTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29369060 61 + 172585720 -AGAAGAGAGTCAGCC-ACGGGCCAGGAGAGCCTATTC---TAGAACACTCAGTGCCTTTCTACTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29029945 61 - 170955103 -AGAAGAGAGTCAGCC-ACGGGCCAGGAGAGCCTATTC---TAGAACACTCAGTGCCTTTCTACTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2010014 61 -   2996164 -AGAAGAGAGTCAGCC-ACGGGCCAGGAGAGCCTATTC---TAGAACACTCAGTGCCTTTCTACTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1881905 61 -   2157725 -AGAAGAGAGTCAGCC-ACGGGCCAGGAGAGCCTATTC---TAGAACACTCAGTGCCTTTCTACTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28326838 61 -  71996105 -AGAAGAGAGTCAGCC-ACGGGCCAGGAGAGCCTATTC---TAGAACACTCAGTGCCTTTCTACTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2006301 61 +   2316924 -AGAAGAGAGTCAGCC-ACGGGCCAGGAGAGCCTATTC---TAGAACACTCAGTGCCTTTCTACTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1890708 61 -   3067355 -AGAAGAGAGTCAGCC-ACGGGCCAGGAGAGCCTATTC---TAGAACACTCAGTGCCTTTCTATTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171412733 56 - 171630274 -AGAGG--GGTCAGCT-GCAGGCCAGGAGAGCCTACGC---TAGAACATCCAG---CCTTCTTCTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            239589 51 -    375362 -AGAGG--AGTGAGCT-GCGGGCCAGGAAAGCCTACTC--------CACCCAG---CCTTCTTCCA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      238768 54 -    373274 ---AGG--AGTCAGCT-GCGGGCCAGCAGAGCCTACTC---TAGAACACCCAG---CCTTCTTCCA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      171895 59 -    285216 -AGAGG--AGTCAGCT-GCAGGCCAGGAGAGCCTACTCTACTACAACACCCAG---CCTTCTTCTA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1546622 53 -   2232465 --------GGTCAGCCTGAGAATCAGGAAACCCCACTC---TAAAACATCTAG--CCTTTCCCCTA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25906015 58 +  26524999 -GGAGGACAGTCAGCC-AGGGGCCAGGAAAGCACACTA---GAGGACACCCAG---CTCTTCTCTG
i canFam3.chr35            I 10 C 0
s dasNov3.JH561790             59715 60 -    302817 GGGAGATAAGT--GCT-GAGCGCCACGGGATCCTAGTT---TAGAGCAGCCAGCCTTTCTCCACCA
i dasNov3.JH561790         C 0 I 1038
e proCoq1.NW_012147953v1      976357 123 -   3516910 I

a score=75302.000000
s hg38.chr6_GL000254v2_alt    170495  7 +   4827813 CCTCCC------C
s panTro5.chr6              29157994  7 + 175400573 CCTCCC------C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29392163  7 + 173848474 CCTCCC------C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5192653  7 +   6154872 CTTCCC------C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74191342  7 + 122973662 CCTTCC------C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29369121  7 + 172585720 CCTCCC------C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29030006  7 - 170955103 CCTCCC------C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2010075  7 -   2996164 CCTCCC------C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1881966  7 -   2157725 CCTCCC------C
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28326899  7 -  71996105 CCTCCC------C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2006362  7 +   2316924 CCTCCC------C
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1890769  7 -   3067355 CCTCCC------C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171412789  7 - 171630274 CCTCCA------C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            239640  7 -    375362 CCTCCC------C
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      238822  7 -    373274 CCTCCC------C
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      171954  7 -    285216 CCTCCC------C
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1546675  7 -   2232465 TCTCTC------T
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25906073 13 +  26524999 CCTCCTGTAAGAG
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             59775 1038 -    302817 I
e proCoq1.NW_012147953v1      976357 123 -   3516910 I

a score=697193.000000
s hg38.chr6_GL000254v2_alt    170502 65 +   4827813 AATAA-----TAAGAGGTTCCCACTGGAGGTTGCACGTATTTTATT-TAGAATATATTCTAAACTTCACAT-
s panTro5.chr6              29158001 65 + 175400573 AAGAA-----TAAGAGGTTCCCACTGGAGGTTGCACGTATTTTATT-TAGAATATATTCTAAACTTCACAT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29392170 65 + 173848474 AAGAA-----TAAGAGGTTCCCACTGGAGGTTGCACGTATTTTATT-TAGAATATATTCTAAACTTCACAT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5192660 65 +   6154872 AAGAA-----TAAGAGGTTCCCACTGGAGGTTGCAGGTATTTTATT-TAGAATATATTCTAAACTTCACAT-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74191349 65 + 122973662 AAGAA-----TAAGAGGTTCCCACTAGAGGTTGCATGTATTTTATT-TAAAATATATTCTAAACTTCACAT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29369128 65 + 172585720 ACGAA-----TGAGAGGTTCCCACTAGAGGTTGCACGTATTTTATT-TAGAATATATTCTAAACTTCACAT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29030013 65 - 170955103 ACGAA-----TGAGAGGTTCCCACTAGAGGTTGCACGTATTTTATT-TAGAATATATTCTAAACTTCACAT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2010082 65 -   2996164 ACGAA-----TGAGAGGTTCCCACTAGAGGTTGCACGTATTTTATT-TAGAATATATTCTAAACTTCACAT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1881973 65 -   2157725 AAGAA-----TGAGAGGTTCCCACTAGAGGTTGCACGTATTTTATT-TAAAATATATTCTAAACTTCACAT-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28326906 65 -  71996105 AAGAA-----TGAGAGGTTCCCACTAGAGGTTGCATGTATTTTATT-TAAAATATATTCTAAACTTCACAT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2006369 65 +   2316924 AAGAA-----TGAGAGGTTCCCACTAGAGGTTGCACGTATTTTATT-TAAAATATATTCTAAACTTCACAT-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1890776 65 -   3067355 AAGAA-----TGAGAGGTTCCCACTAGAAGTCGCACGTATTTTATT-TAAAATATATTCTAAACTTCACAT-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171412796 65 - 171630274 AAGAA-----CAAGAGCTTCCCACGAGAGGCTGCGCTCATTTTATT-TAAAACATATTCTAAACTTCACAT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            239647 65 -    375362 AAGAA-----CATGAGCTTCCCACGAGAGGCTGCGCTCATTTTATT-TAAAATATATTCTAAATTTCACAT-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      238829 65 -    373274 AAGAA-----CAAGAGCTTCCCACGAGAGGTTGTGCTCATTTTATT-TAAAGTATATTCTAAACTTCACAT-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      171961 65 -    285216 AAGAA-----CAAGAGCTTCCCACAAGAGGTTGCGCTCATTTTATT-TAAAATATATTCTAAACTTCACAT-
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1546682 71 -   2232465 GAGAAGAGGGTAAGAGCTCCCTGCTAGAGGTTGTAGTCATTTTATGATGAAATATATCATAAAAGTCACTA-
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25906086 63 +  26524999 GAGAA-----CATGAATGCCCCACAATAGACCGCATTCATCTTG---TGAAATTCATCCTGGAGTTGACAT-
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             60813 60 -    302817 AAGAC-----TAAGAGTTCCCCACTGTAGGCTTCATTTGTCTTATG-------ACATCCTGAAGTTGCCCAA
i dasNov3.JH561790         I 1038 C 0
e proCoq1.NW_012147953v1      976357 123 -   3516910 I

a score=488576.000000
s hg38.chr6_GL000254v2_alt    170567 33 +   4827813 TTCAAAAATTACTGCTTGGATTAGCTGGTTACC--------
s panTro5.chr6              29158066 33 + 175400573 TTCAAAAATTACTGCTTGGATTAGCTGGTTACC--------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29392235 33 + 173848474 TTCAAAAATTACTGCTTGGATTAGCTGGTTACC--------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5192725 32 +   6154872 TTC-AAAATTACTGCTTGGATTAGCTGGTTACC--------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74191414 33 + 122973662 TTCAAAAATTACTGCTTGGATTAGCTGGTTACC--------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29369193 33 + 172585720 TTCAAAAATTACTGCTTGGATTAGCTGGTTACC--------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29030078 33 - 170955103 TTCAAAAATTACTGCTTGGATTAGCTGGTTACC--------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2010147 33 -   2996164 TTCAAAAATTACTGCTTGGATTAGCTGGTTACC--------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1882038 33 -   2157725 TTCAAAAATTACTGCTTGGATTAGCTGGTTACC--------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28326971 33 -  71996105 TTCAAAAATTACTGCTTGGATTAGCTGGTTACC--------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2006434 33 +   2316924 TTCAAAAATTACTGCTTGGATTAGCTGGTTACC--------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1890841 33 -   3067355 TTCAAAAATTACTGCTTGGATTAGCTGGTTACC--------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171412861 33 - 171630274 TTTAAAAACGACTGCTTGGATCAGCTGGTTCCC--------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            239712 33 -    375362 TTCAAAAACGACAGCTTGGATTAGCTGGTTACC--------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      238894 33 -    373274 TTCAAAAACGACTGCTTGGATTAGCTGGTTACC--------
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      172026 33 -    285216 TTCAAAAACGACTGCTTGGATTAGCTGGTTACC--------
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      976480 33 -   3516910 TTCAAAAATTACTGCTTCGATCAGCTGGTTACC--------
i proCoq1.NW_012147953v1   I 123 I 47
s otoGar3.GL873742           1546753 33 -   2232465 TTCAAAAATTAGTGCTTGGATTAGCTGGTTACC--------
i otoGar3.GL873742         C 0 I 12
s canFam3.chr35             25906149 33 +  26524999 TCCAAAAAGTATTGTTTGGATTAGCTGACTACC--------
i canFam3.chr35            C 0 I 10
s dasNov3.JH561790             60873 41 -    302817 TTCAAAGATTATTGTTTGGATGAGCTGGCTCTTTTTTAGTC
i dasNov3.JH561790         C 0 C 0

a score=383068.000000
s hg38.chr6_GL000254v2_alt    170600 38 +   4827813 AGAATACACTGAAAATACAGA-ATTTTAGCCCCGTATCT
s panTro5.chr6              29158099 38 + 175400573 AGAATACACTGAAAATACAGA-ATTTTAGCTCCGTATCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29392268 38 + 173848474 AGAATACACTGAAAATACAGA-ATTTTAGCTCCGTATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5192757 38 +   6154872 AGAATACACTGAAAATACAGA-ATTTTAGCCCCGTATCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74191447 38 + 122973662 AGAATACACTGAAAATACAGA-ATTTTAGCCCTGTATCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29369226 38 + 172585720 AGAATACACTGAAAATACTGA-ATTTTAGCCCCATATCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29030111 38 - 170955103 AGAATACACTGAAAATACTGA-ATTTTAGCCCCATATCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2010180 38 -   2996164 AGAATACACTGAAAATACTGA-ATTTTAGCCCCATATCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1882071 38 -   2157725 AGAATACACTGAAAATACTGA-ATTTTAGCCCCATATCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28327004 38 -  71996105 AGAATACACTGAAAATACCGA-ATTTTAGCCCCGTATCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2006467 38 +   2316924 AGAATACACTGAAAATACTGA-ATTTTAGCCCCATATCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1890874 38 -   3067355 AGAATACACTGAAAATACTGA-ATTTTAGCCCCATATCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171412894 36 - 171630274 AGGATACGCTGAAAGTACTGA-GTTTTAGCCCCACAG--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            239745 37 -    375362 AGGATACACTTAAAGTACTGA-ATTTTAGCCCCACAGC-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      238927 37 -    373274 AGGATACACTGAAAATACTGA-ATTTTAGCCCCGCAGC-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      172059 37 -    285216 AGGATACACTGAAAGTACTGA-ATTTTAGCCCCACAGC-
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1546798 37 -   2232465 AGAGAATATTGAAAGTACTAA-GATTTCACCAGTTCCC-
i otoGar3.GL873742         I 12 C 0
s canFam3.chr35             25906192 39 +  26524999 AGGACATATTGAAAGTACTGAGATTTTACCTCCATTCCC
i canFam3.chr35            I 10 I 1
s dasNov3.JH561790             60914 38 -    302817 ACGGTATTTTGAAAGTACTGACATTTTATCCCCCTTCT-
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      976513 47 -   3516910 I

a score=440173.000000
s hg38.chr6_GL000254v2_alt    170638 31 +   4827813 TTTCTTTCACATCTGAAGCCACAATATCCAT
s panTro5.chr6              29158137 31 + 175400573 TTTCTTTCACATCTGAAGCCACAATATCCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29392306 31 + 173848474 TTTCTTTCACATCTGAAGCCACAATATCCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5192795 31 +   6154872 TTTCTTTCACATCTGAAGCCACAATATCCGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74191485 31 + 122973662 TTTCTTTCACATCTGAAGCCACAATATCCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29369264 31 + 172585720 TTTCTTTCACATCTGAAGCCACAATATCCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29030149 31 - 170955103 TTTCTTTCACATCTGAAGCCACAATATCCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2010218 31 -   2996164 TTTCTTTCACATCTGAAGCCACAATATCCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1882109 31 -   2157725 TTTCTTTCACATCTGAAGCCACAATATCCAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28327042 31 -  71996105 TTTCTTTCACATCTGAAGCCACAATATCCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2006505 31 +   2316924 TTTCTTTCACATCTGAAGCCACAATATCCAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1890912 31 -   3067355 TTTCTTTCGCATCTGAAACCACAATATCCAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171412930 19 - 171630274 ------------CTGAAGCCACAACATCCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            239782 31 -    375362 TTGCTTTCACATCTGAAGCCACAACATCCAT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      238964 31 -    373274 TTTCTTTCACATCTGAAGCCACAACATCCAT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      172096 31 -    285216 TTTCTGTCACATCTGAAGCCACGACATCCAT
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      976560 31 -   3516910 TTTCTTTCACATCTTAAACCACAATATCCAT
i proCoq1.NW_012147953v1   I 47 I 563
s otoGar3.GL873742           1546835 31 -   2232465 TTTCTTTCACATCATATGCCACATTATCCAT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25906232 31 +  26524999 TCCTTTTAACATCTTAACTCACATTATCCAT
i canFam3.chr35            I 1 C 0
s dasNov3.JH561790             60952 30 -    302817 TTTTTTTCATGTCT-AAGCCACAATATCCAT
i dasNov3.JH561790         C 0 C 0

a score=73359.000000
s hg38.chr6_GL000254v2_alt    170669 10 +   4827813 CATGAACT--------------------------------------------------------------------------------GA
s panTro5.chr6              29158168 10 + 175400573 CATGAACT--------------------------------------------------------------------------------GA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29392337 10 + 173848474 CATGAACT--------------------------------------------------------------------------------GA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5192826 10 +   6154872 CATGAACT--------------------------------------------------------------------------------GA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74191516 10 + 122973662 TATGAACT--------------------------------------------------------------------------------GA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29369295 10 + 172585720 TATGAACC--------------------------------------------------------------------------------GA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29030180 10 - 170955103 TATGAACC--------------------------------------------------------------------------------GA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2010249 10 -   2996164 TATGAACC--------------------------------------------------------------------------------GA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1882140 10 -   2157725 TATGAACT--------------------------------------------------------------------------------GA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28327073 10 -  71996105 TATGAACC--------------------------------------------------------------------------------GA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2006536 10 +   2316924 TATGAACC--------------------------------------------------------------------------------GA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1890943 10 -   3067355 TATGAACC--------------------------------------------------------------------------------GA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171412949 10 - 171630274 TATGAACT--------------------------------------------------------------------------------GC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            239813 10 -    375362 TACGAACT--------------------------------------------------------------------------------GA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      238995 10 -    373274 TATGAACT--------------------------------------------------------------------------------GA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      172127 10 -    285216 TATGAACT--------------------------------------------------------------------------------GA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1546866 90 -   2232465 TATAAATTTCAAGTTTTCTTAcatgtccataatcacttaatctgagagcttcaggggccaaaagtttcaaagaattcagaatattataga
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25906263 10 +  26524999 TATAAGCT--------------------------------------------------------------------------------GA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             60982 10 -    302817 TATAAACA--------------------------------------------------------------------------------GA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      976591 563 -   3516910 I

a score=27893.000000
s hg38.chr6_GL000254v2_alt    170679 3 +   4827813 TTT
s panTro5.chr6              29158178 3 + 175400573 ttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29392347 3 + 173848474 ttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5192836 3 +   6154872 TTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74191526 3 + 122973662 TTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29369305 3 + 172585720 TTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29030190 3 - 170955103 TTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2010259 3 -   2996164 TTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1882150 3 -   2157725 TTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28327083 3 -  71996105 TTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2006546 3 +   2316924 TTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1890953 3 -   3067355 TTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171412959 3 - 171630274 GTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            239823 3 -    375362 GTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      239005 3 -    373274 GTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      172137 3 -    285216 GTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1546956 3 -   2232465 ttt
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25906273 3 +  26524999 ATT
i canFam3.chr35            C 0 I 269
e dasNov3.JH561790             60992 0 -    302817 C
e proCoq1.NW_012147953v1      976591 563 -   3516910 I

a score=1587530.000000
s hg38.chr6_GL000254v2_alt    170682 159 +   4827813 TAA-----------------------------------------------------gagatagggtcttgctctgttgcctaggctggagtgcagtggtgtggtcatagttcattgtaaccccaaa-ctcctgggctcaggtgattctcccgcctaagacacccaagtagctgggaccataggtgtgcactaccacc----ctaattttaaaaaatt
s panTro5.chr6              29158181 159 + 175400573 taa-----------------------------------------------------gagctagggtcttgctctgttgcctaggctggagcgcagtggtgtggtcatagttcattgtaaccccaaa-ctcctgggctcaggtgattctcccgcctaagacacccaagtagctgggaccataggtgtgcactaccacc----ctaatttaaaaaaatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29392350 159 + 173848474 taa-----------------------------------------------------gagctagggtcttgctctgttgcctaggctggagcgcagtagtgtggtcatagttcattgtaaccccaaa-ctcctgggctcaggtgattctcctgcctaagacacccaagtagctgggaccataggtgtgcactaccacc----ctaatttaaaaaaatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5192839 163 +   6154872 TAA-----------------------------------------------------gagatagggtcttgctctgttgcctaggctggagcgcagtggtgtggtcatagttcattgtaaccccaaa-ctcctgggctcaggtgattctcctgcctaagacacccaagtagctgggaccataggtgtgcactaccaccctggctaatttttaaaaatt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74191529 163 + 122973662 TAA-----------------------------------------------------gagatagggtcttgctctgttgcctaggctggagcgcagtggtgtggtcatggttcattgtaaccccaaa-ctcctgggctcaggtgattctcctgcctaagactcccaagtagctgggaccataggtgtgcactaccaccctggctaatttttaaaaatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29369308 154 + 172585720 TAA-----------------------------------------------------gagatagggt-----tctgttgcccaggctggagcgcagtggtgtggtcatagttcattgtaaccccaaa-ctcctgggctcaggtgattctcccgcctaagactcccaagtagctgggactataggtatgcactaccacc----ctaattttaaaaaatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29030193 154 - 170955103 TAA-----------------------------------------------------gagatagggt-----tctgttgcccaggctggagcgcagtggtgtggtcatagttcattgtaaccccaaa-ctcctgggctcaggtgattctcccgcctaagactcccaagtagctgggactataggtatgcactaccacc----ctaattttaaaaaatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2010262 154 -   2996164 TAA-----------------------------------------------------gagatagggt-----tctgttgcccaggctggagcgcagtggtgtggtcatagttcattgtaaccccaaa-ctcctgggctcaggtgattctcccgcctaagactcccaagtagctgggactataggtgtgcactaccacc----ctaattttaaaaaatt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1882153 154 -   2157725 TAA-----------------------------------------------------gagatagggt-----tctgttgcccaggctggagcgcagtggtgtggtcatagttcattgtaaccccaaa-ctcctgggctcaggtgattctcccgcctaagactcccaagtagctgggattataggtgtgcactaccacc----ctaattttaaaaaatt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28327086 154 -  71996105 TAA-----------------------------------------------------gagatagggt-----tctgttgcccaggctggagcgcagtggtgtggtcatagttcattgtaaccccaaa-ctcctgggctcaggtgattctcccgcctaagactcccaagtagctgggactataggtgtgcactaccacc----ctaattttaaaaaatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2006549 155 +   2316924 TAA-----------------------------------------------------gagatagggt-----tctgttgcccaggctggagcgcagtggtgtggtcatagttcattgtaaccccaaatctcctgggctcaggtgattctcccgcctaagactcccaagtagctgggactataggtgtgcactaccacc----ctaattttaaaaaatt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1890956 159 -   3067355 TAA-----------------------------------------------------gagatagggtcttgctctgttgcccaggctggagcacagtggtgtggtcatagttcattgtaaccccaaa-ctcctgggctcaggtgattctcccgcctaagactcccaagtagctgggatcataggtgtgcactaccacc----ctaattttaaaaaaat
i colAng1.NW_012115566v1   C 0 I 303
s calJac3.chr4             171412962 163 - 171630274 TAA-----------------------------------------------------gagatcgggtcttgctctgatgcccaggctggagtgcagtggtgtggtcatagttcattgtaaccccaaa-ttcctgggctcagaggatcctcccgcctaagactcccaagtacctgggaccataggcgtgtactaccaccctggctaatttttaaaaact
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            239826 163 -    375362 TAA-----------------------------------------------------gagatagggtcttgctctgatgcccaggctggagtgcagtggtatggtcacagttccttgtaaccccaaa-ttcctgggctcagaggatcctcctgccgaagactcccaagtacctggcgccacaggcgtgcactaccaccctggctaatttttaaaaact
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      239008 163 -    373274 TAA-----------------------------------------------------gagagagggtcttgctctgatgcccaggctggagtgcagtggtgtggtcatagttccttgtaaccccaaa-ttcctgggctcagaggatcctcccgcctaagactcccaagtacctgggaccacaggcgtgcactaccaccctgactaatttttaaaaact
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      172140 163 -    285216 TAA-----------------------------------------------------gagatagggtcttgctctgatgcccaggctggagtgcagtggtgtggtcatagttcattgtaaccccaaa-ttcctgggctcagaggatcctcccgcctaagactcccaagtacctgggaccaaaggtgtgcactaccaccctggctaatttttgaaaact
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1546959 192 -   2232465 tagacaggCAGGCTCTGAGTGATGCACTTTTGACTCAACTGtttttttctttaattgagacagagtctcattttgtcacccttggtagagtgccatggt---gtcacagctcacagcaacctcaaa-ctcttgggcttaagtgattctcttgcctcagcctcccaa-----------tacaggtgc------ccacc----acaatgctcagctatt
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             60992   0 -    302817 C
e proCoq1.NW_012147953v1      976591 563 -   3516910 I
e canFam3.chr35             25906276 269 +  26524999 I

a score=1248136.000000
s hg38.chr6_GL000254v2_alt    170841 132 +   4827813 ttttgtagagatgag---gtcttactatgttgctcaggatggtctcgaactcttggcctcaagc---aatcctcccacctcaacttcccaaagcaat-gggatttcaggcatgagccactgtgcctggcAGATACGCTG
s panTro5.chr6              29158340 132 + 175400573 ttttgtagagatgag---gtcttactatgttgcccaggatggtctcgaactcttggcctcaagc---aatcctcccacctcaacttcccaaagcaat-gggatttcaggcatgagccactgtgcctggcAGATATGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29392509 132 + 173848474 ttttgtagagatgag---gtcttactatgttgcccaggatggtctcgaactcttggcctcaagc---aatcctcccacctcaacttcccaaagcaat-gggatttcaggcatgagccactgtgcctggcAGATACGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5193002 132 +   6154872 ttttgtagagatgag---gtcttactatgttgcccaggatggtctcgaactcttggcctcaagc---aatcctcccacctcaacttcccaaagcaat-gggatttcaggcatgagccactgtgcctggcAGATACGCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74191692 132 + 122973662 ttttgtagagatgag---gtcttactatgttgcccaggatggtctcgaactcttggcctcaagc---aatcctcccacctcaacttcccaaagcaat-gtgatttcaggcataagccactgtgcctggcTGATATGCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29369462 131 + 172585720 ttttgtagagacgag---gtcttac--tgttgcccaggatggtcttgaactcttggcctcaagc---aatcctcccacctcaacttcccaaagcaatggggatttcaggcatgagccactgtgcctggcAGATACACTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29030347 131 - 170955103 ttttgtagagacgag---gtcttac--tgttgcccaggatggtcttgaactcttggcctcaagc---aatcctcccacctcaacttcccaaagcaatggggatttcaggcatgagccactgtgcctggcAGATACACTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2010416 131 -   2996164 ttttgtagagacgag---gtcttac--tgttgcccaggatggtcttgaactcttggcctcaagc---aatcctcccacctcaacttcccaaagcaatggggatttcaggcatgagccactgtgcctggcAGATACACTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1882307 131 -   2157725 ttttgtagagacgag---gtcttac--tgttgcccaggatggtcttgaactcttggcctcaagc---aatcctcccacctcaacttcccaaagcaatggggatttcaggcatgagccactgtgcctggcAGATACACTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28327240 130 -  71996105 ttttgtagagacgag---gtcttac--tgttgcccaggatggtcttgaactcttggcctcaagc---aatcctcccacctcaacttcccaaagcaat-gggatttcaggcatgagccactgtgcctggcAGATACACTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2006704 131 +   2316924 ttttgcagagacgag---gtcttac--tgttgcccaggatggtcttgaactcttggcctcaagc---aatcctcccacctcaacttcccaaagcaatggggatttcaggcatgagccactgtgcctggcAGATACACTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1891418 131 -   3067355 ttttgtagagacaag---gtcttac--tgttgcccaggacggtcctgaactcttggcctcaagc---aatcctcccacctcaacttcccaaagcaatggggatttcaggcatgagctactgtgcctggcAGATACACTG
i colAng1.NW_012115566v1   I 303 C 0
s calJac3.chr4             171413125 134 - 171630274 ttttgtagagatggg-aggtctcactgtgttgtccaggatggtcttgagctctgggttccaagc---aatcctcctatctcaacctcccaaagcaat-gggattacagacatgagccacggtgcctggcAGATACACTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            239989 133 -    375362 ttttgcagagatggg--ggtctcactctgttgtccaggatggtcttaaactcttggccccaagc---aatcctcctacctcaacctcccaaaacaat-gggattacagatgtgagccactgtgcctggcAGATACACCG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      239171 135 -    373274 ttttgtagagatgggggggtctcactctgttgtccaggatggtcttgaactcttggccccaaac---aatcctcctacctcaacctcccaaagcaat-gagattacaaacatgagccactgtgcctggGAGATACACCA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      172303 134 -    285216 ttttgtagagatggg-ggatctcattctgttgtccaggatggtcttgaactcttggccccaagc---aatcctcctacctcaacctcccaaagcaat-gggattacagacatcagccactgtgcctggcAGATACACTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1547151  80 -   2232465 ttttttattgcagtt---gtcat----tgttgtttagca-ggcctgga----------ccaggctcgaacccgccagcctcagtgt---------at-----------------------gtggctggca---------
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             60992   0 -    302817 C
e proCoq1.NW_012147953v1      976591 563 -   3516910 I
e canFam3.chr35             25906276 269 +  26524999 I

a score=999831.000000
s hg38.chr6_GL000254v2_alt    170973  96 +   4827813 AATTGAGGTTTTCTTAcacgctcatc----atcccttattctgaaaattccaggggccccaagtttcacagaattcagaatattacaggttttagacag------------g
s panTro5.chr6              29158472  96 + 175400573 AATTGAGGTTTTCTTAcatgctcatc----atcccttattctgaaaactccaggggccccaagtttcacagaattcagaatattacaggttttagacag------------g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29392641  96 + 173848474 AATTGAGGTTTTCTTAcacgctcatc----atcccttattctgaaaactccaggggccccaagtttcacagaattcagaatattacaggttttagacag------------g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5193134 108 +   6154872 AATTGAGGTTTTCTTAcacgctcatc----atcccttattctgaaaactccaggggccccaagtttcacagaattcagaatattacaggttttagacaggcagggtctggtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74191824 104 + 122973662 AATTGAGGTCTTCTTAcacgctcatc----atcccttattctgaaaactccaggggccccaagtttcacagaattcagaatattacaggttttaggcag----ggtctggtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29369593 108 + 172585720 AATTAAGGTTTTCTTAcatgctcatc----atcccttattctgaaaacttcaggggcccaaagtttcacagaattcagaatattacaggttttagacaggtagggtctggcg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29030478 108 - 170955103 AATTAAAGTTTTCTTAcatgctcatc----atcccttattctgaaaacttcaggggcccaaagtttcacagaattcagaatattacaggttttagacaggtagggtctggcg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2010547 108 -   2996164 AATTGAGGTTTTCTTAcatgctcatc----atcccttattctgaaaacttcaggggcccaaagtttcacagaattcagaatattacaggttttagacaggtagggtctggcg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1882438 107 -   2157725 CATTGAGATTTTCTTAcatgctcatc----atcccttattctgaaaacttcaggggccc-aagtttcacagaattcagaatattacaggttttagacaggtagggtctggcg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28327370 108 -  71996105 AATTGAGGTTTTCTTAcatgctcacc----atcccttattctgaaaacttcaggggcccaaagtttcacagaattcagaatattacaggttttagacaggtagggtcttgcg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2006835 108 +   2316924 AATTGAGGTTTTCTTAcatgctcatc----atcccttattctgaaaacttcaggggcccaaagtttcacagaatccagaatattacaggttttagacaggtagggtctggcg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1891549 108 -   3067355 AATTGAGGTTTTCTTAcatgctcatc----atcccttattctgaaaacttcaggggcccaaagtttcacagaattcagaatattacaggttttagacaggtagggtctggtg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171413259  96 - 171630274 AATTGAGGTTTTCTTACATGTTCACC----AACACTTATTCTGAAAACTTCAGGGGCCCTAAGTTTCACAGAATGCAGAATATTACAGGTTTTAGACAGg------------
i calJac3.chr4             C 0 I 12
s saiBol1.JH378348            240122  96 -    375362 AACTGAGGTTTTCTTACGTGCTcacc----atcccttattctgaaaacttcgggggcccaaagtttcacagaattcggaatattacaggttttagacagg------------
i saiBol1.JH378348         C 0 I 325
s cebCap1.NW_016108108v1      239306  96 -    373274 AACTGAGGTTTTCTTACATGCTCACC----ATCCCTTATTCTGAAAACTTCAGGGGCCCATAGTTTCACACAATTCACAATATTACAGGTTTTAGACAGg------------
i cebCap1.NW_016108108v1   C 0 I 12
s aotNan1.NW_018494050v1      172437  96 -    285216 AATTGAGGTTTTCTTAcatgctcacc----atcccttattctgaaaacttccagggctcgaagtttcacagaattcagaatattacaggttttagacagg------------
i aotNan1.NW_018494050v1   C 0 I 12
s otoGar3.GL873742           1547231  41 -   2232465 ---------------------------------ccctactcactgagctacgggtgcc--aagGCT-----------------------TTTTACTCAA-------------
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             60992 100 -    302817 AATTAAGGTTCTCTTAAATGTATAtcaacaatcccttaacctgaaagcctcaggagacagaagttttacagaattcagaatattacagatttcagaaagg------------
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      976591 563 -   3516910 I
e canFam3.chr35             25906276 269 +  26524999 I

a score=1988599.000000
s hg38.chr6_GL000254v2_alt    171069 208 +   4827813 ------------cagcattctataatgaagtattaatagatctgctgtgagattcatgaatgtttacataatgaaggata--aaggctctaaacagtaccacataaatt----------------caggttttgatgcta----------taattaatttcccacaaaa--taatgaaaaaggttttggctttcagagatttgggattttagaactgtgggtaagggactgggaa---cctgT--ATCA-GTATGC
s panTro5.chr6              29158568 208 + 175400573 ------------cagcattctataatgaagtattaatagatctgctgtgagatccatgaatgtttacataatgaaggata--aagactctaaacagtaccacataaatt----------------caggttttgatgcta----------taattaatttcccacaaaa--taatgaaaaaggttttggctttccgagatttgggattttagaactgtgggtaagggactgggaa---cctgT--ATCA-GTATGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29392737 208 + 173848474 ------------cagcattctataatgaagtattaatagatctgctgtgagatccatgaatgtttacataatgaaggata--aagactctaaacagtaccacataaatt----------------caggttttgatgcta----------taattaatttcccacaaaa--taatgaaaaaggttttggctttcagagatttgggattttagaactgtgggtaagggactgggaa---cctgT--ATCA-GTATGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5193242 208 +   6154872 ------------cagcattctataatgaagtattaatagatctgctgtgagatccatgaatgtttacataatgaaggata--aagactctaaacagtaccacataaatt----------------caagttttgatgcta----------taattaatttcccacaaaa--taatgaaaaaggttttggctttcagagatttgggattttagaactgtgggtaagggactgggaa---cctgT--ATCA-GTATGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74191928 208 + 122973662 ------------cagcattctataatgaaatattaatagatctgctgtgagatccatgcatgtttacataatgaaggata--aagactctaaacggtaccacataaatt----------------caggttttgatgcta----------taattaatttcctacaaaa--taatgaaaaaggttttgcctttcagagatttgggattttagaactgtgggtaagggactgagaa---cctgT--ATTG-GTATGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29369701 202 + 172585720 ------------cagcattctatgatgaaatattaatagatctgctatgagatccatgaatgtttacataatgaaggat----agactctaaacagcaccacataaatt----------------caggttttgatactg--------------taatttcctacaaaa--taatgaaaaaggttgtggctttcagagattggggattttagaactgtgggtaaaggactgggaa---cctgT--ATCA-GTATGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29030586 202 - 170955103 ------------cagcattctatgatgaaatattaatagatctgctatgagatccatgaatgtttacataatgaaggat----agactctaaacagcaccacataaatt----------------caggttttgatactg--------------taatttcctacaaaa--taatgaaaaaggttgtggctttcagagattggggattttagaactgtgggtaaaggactgggaa---cctgT--ATCA-GTATGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2010655 202 -   2996164 ------------cagcattctataatgaaatattaatagatctgctatgagatccacgaatgtttacataatgaaggat----agactctaaacagcaccacataaatt----------------caggttttgatactg--------------taatttcctacaaaa--taatgaaaaagattgtggctttcagagattggggattttagaactgtgggtaaaggactgggaa---cctgT--ATCA-GTATGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1882545 202 -   2157725 ------------cagcattctataatgaaatattaatagatctgctatgagatccatgaatgtttacataatgaaggat----agactctaaacagcaccacataaatt----------------caggttttgatactg--------------taatttcctacaaaa--taatgaaaaaggttgtggctttcagagattggggattttagaactgtgggtaaaggactgggaa---cctgT--ATCA-GTATGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28327478 202 -  71996105 ------------cagcattctataatgaaatattaatagatctgctatgagatccacgaatgtttacataatgaaggat----agactctaaacagcaccacataaatt----------------caggttttgatacta--------------taatttcctacaaaa--taatgaaaaaggttgtggctttcagagattggggattttagaactgtgggtaaaggactgggaa---cctgT--ATCA-GTATGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2006943 202 +   2316924 ------------cagcattctataatgaaatattaatagatctgctatgagatccatgaatgtttacataatgaaggat----agactctaaacagcgccacataaatt----------------caggttttgatactg--------------taatttcctacaaaa--taatgaaaaaggttgtggctttcagagattggggattttagaactgtgggtaaaggactgggaa---cctgT--ATCA-GTATGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1891657 202 -   3067355 ------------cagcattctataatgaaatattaatagatctgctatgacatccacgaatgtttacctaatgaaggat----atactctaaacagcaccacataaatt----------------caggttttgatacta--------------taatttcctacaaaa--taatgaaaaaggttgtggctttcagagattcgggattttaggactgtgggtaaaggactgggaa---cctgT--ATCA-GTATGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171413367 201 - 171630274 ------------cagtattctataatgaaatattaatagatctgctgtgaggtccatgcatgtttacctcatgaaggag-----gactctgaatagcgccacacaattt----------------caggttttgatactg--------------taatttcctataaaa--taatgaaaacgctttcgactgttagagatttgggattttcgaactgtgggcaagggactgggaa---cctgT--ATCA-GTATGC
i calJac3.chr4             I 12 C 0
s saiBol1.JH378348            240543 192 -    375362 ------------cagtattctataatgaaatatgaataggtctgcttcgagatccatgaatatttacatcatgaagga------gactctaaatagtgccacataattt----------------caggttttg----------------------atttcctacaaaa--taatgacaacactttcggctttgagagatttgggattttagaactgtggacaaggaactgggaa---cctgT--ATCA-GTATGC
i saiBol1.JH378348         I 325 C 0
s cebCap1.NW_016108108v1      239414 205 -    373274 ------------cagtattctataatgaaatattagtagatctgctgtgagatctatgaatatttacatcatgaaggaga--aagactctaaatagtgccacataattt----------------caggttttgatactc--------------taatttcctacaaaa--taatgaaaacactttcggctttcagagctttgggattttagaactatggacaaagtactgggaa---cctgT--ATCAGGTATGT
i cebCap1.NW_016108108v1   I 12 C 0
s aotNan1.NW_018494050v1      172545 197 -    285216 ------------cattattctataatgaaatattaatagatctgctgtgagatccatgaatgtttacatcatgaaggaga--aagactctaaatagtgccacataattt----------------caggttttgatacta--------------taatttcctacaaaa--taatgaaaacgctttc-------agagatttgggattttagaactgtgggcaagggactgggaa---cctgT--ATCA-GCATGC
i aotNan1.NW_018494050v1   I 12 C 0
s otoGar3.GL873742           1547272 223 -   2232465 -------------------CTAT-------TATTAATAAAGCTGCTATGAGACATATGAATGTTCACCTCAATGCTGACAACAGGACCTTGTATAGTTCCATTTTAGATTTAGAATCTAGAGAGACAGACTCTAGTCCTGCATTAATTCATAATTAATTTGGTATAAAA--TAATGAAAAGGCTTGTGGCTTTCAAAGATTCGGGATTTTGGAATTAT----AAGGGACTGAGAATAGTCTGGGAACAA-ATTTGC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             61092 187 -    302817 caggatctggtgcaGCACTTCATAATCAAATCTTAATAGATTTTCTGTGAAACATATGAACGGTCATATTACATGGGAG-----------ACACAGTCTTACAACTGTt----------------cagattttacaa--a--------------aagcttactgtaaaatttaatgaaaaagcttttggctttcagagtttggagattttagaattgtggataag-------------TATGT-------------
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      976591 563 -   3516910 I
e canFam3.chr35             25906276 269 +  26524999 I

a score=205610.000000
s hg38.chr6_GL000254v2_alt    171277 18 +   4827813 TTACTTTTTAAATCACTC
s panTro5.chr6              29158776 18 + 175400573 TTACTTTTTAAATCACTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29392945 18 + 173848474 TTACTTTTTAAATCACTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5193450 18 +   6154872 TTACTTTTTAAATCACTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74192136 18 + 122973662 TTACCTTTTAAATCACTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29369903 18 + 172585720 TTACCTTTTAAATCACTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29030788 18 - 170955103 TTACCTTTTAAATCACTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2010857 18 -   2996164 TTACCTTTTAAATCACTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1882747 18 -   2157725 TTACCTTTTAAATCACTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28327680 18 -  71996105 TTACCTTTTAAATCACTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2007145 18 +   2316924 TTACCTTTTAAATCACTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1891859 18 -   3067355 TTACCTTTTAAATCACTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171413568 18 - 171630274 TCACCTTTCAAATCACTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            240735 18 -    375362 TCACCTTTCAAATCACTC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      239619 18 -    373274 TCACCTTTCAAATCACTC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      172742 18 -    285216 TCACCTTTCAAATCACTC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1547495 18 -   2232465 CCACCTTTCAAATCACTC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             61279  0 -    302817 C
e proCoq1.NW_012147953v1      976591 563 -   3516910 I
e canFam3.chr35             25906276 269 +  26524999 I

a score=43680.000000
s hg38.chr6_GL000254v2_alt    171295 4 +   4827813 TTTT
s panTro5.chr6              29158794 4 + 175400573 TTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29392963 4 + 173848474 TTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5193468 4 +   6154872 TTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74192154 4 + 122973662 TTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29369921 4 + 172585720 TTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29030806 4 - 170955103 TTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2010875 4 -   2996164 TTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1882765 4 -   2157725 TTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28327698 4 -  71996105 TTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2007163 4 +   2316924 TTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1891877 4 -   3067355 TTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171413586 4 - 171630274 TTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            240753 4 -    375362 TTTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      239637 4 -    373274 TTTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      172760 4 -    285216 TTTT
i aotNan1.NW_018494050v1   C 0 I 16
e dasNov3.JH561790             61279 0 -    302817 C
e proCoq1.NW_012147953v1      976591 563 -   3516910 I
e canFam3.chr35             25906276 269 +  26524999 I
e otoGar3.GL873742           1547513 0 -   2232465 C

a score=70795.000000
s hg38.chr6_GL000254v2_alt    171299 18 +   4827813 -AAAATTATtttttacttt
s panTro5.chr6              29158798 18 + 175400573 -AAAATTATtttttacttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29392967 18 + 173848474 -AAAATTATtttttacttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5193472 18 +   6154872 -AAAATTATtttttacttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74192158 18 + 122973662 -AAAATTAttttttacttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29369925 16 + 172585720 -ACAATTAttttttact--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29030810 16 - 170955103 -ACAATTAttttttact--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2010879 16 -   2996164 -ACAATTAttttttact--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1882769 16 -   2157725 -ACAATTAttttttact--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28327702 16 -  71996105 -ACAATTAttttttact--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2007167 16 +   2316924 -ACAATTAttttttact--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1891881 16 -   3067355 -ACAATTAttttttact--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171413590 16 - 171630274 TTTATAtttcttttac---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            240757 16 -    375362 TTAACAtttcttttac---
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      239641 16 -    373274 TTTATAtttcttttac---
i cebCap1.NW_016108108v1   C 0 C 0
e dasNov3.JH561790             61279  0 -    302817 C
e proCoq1.NW_012147953v1      976591 563 -   3516910 I
e canFam3.chr35             25906276 269 +  26524999 I
e otoGar3.GL873742           1547513  0 -   2232465 C
e aotNan1.NW_018494050v1      172764 16 -    285216 I

a score=1288634.000000
s hg38.chr6_GL000254v2_alt    171317 128 +   4827813 tttttattttttgagatgaggtctcactctgtcacccagactgtagtacagtggcataatcatggctcact------------------------gcagacttcccatttcagccttccaaagtgttaggactacaggtgtgagccactaca
s panTro5.chr6              29158816 128 + 175400573 tttttattttttgagatgaggtctcactctgtcacccagactgtagtacagtggcataatcatggctcact------------------------gcagacttcccatttcagccttccaaagtgttaggactacaggtgtgagccactaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29392985 128 + 173848474 tttttattttttgagatgaggtctcactctgtcacccagactgtagtacagtggcataatcatggctcact------------------------gcagacttcccatttcagccttccaaagtgttaggactacaggtgtgagccactaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5193490 128 +   6154872 tttttattttttgagatgaggtctcactctgtcacccagactgtagtacagtggcataatcatggctcact------------------------gcagacttcccatttcagccttccaaagtgttaggactacaggtgtgagccactaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74192176 146 + 122973662 ttcttattttttgagatgagg------tctgtcacccagactgtagtacagtggcataatcatggctcactgcagacttcatctcccgggctcaagcagacttcccatttcagcctcccaaagtgttaggactacaggtgtgagccactaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29369941 147 + 172585720 ---gtattttttgagatgaggtctcactctgtcacccagac--tagtacagtggcataatcatggctcactgcagacttcatcttccgggctcaagcagtcttcccatttcagcctcccaaagtgttaggactacaggtgtgagtcactaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29030826 147 - 170955103 ---gtattttttgagatgaggtctcactctgtcacccatac--tagtacagtggcataatcatggctcactgcagacttcatcttccgggctcaagcagtcttcccatttcagcctcccaaagtgttaggactacaggtgtgagtcactaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2010895 147 -   2996164 ---gtattttttgagatgaggtctcactctgtcacccagac--tagtacagtggcataatcatggctcactgcagacttcatcttccgggctcaagcagtcttcccatttcagcctcccaaagtgttaggactacaggtgtgagtcactaca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1882785 147 -   2157725 ---gtattttttgagatgaggtctcactctgtcacccagac--tagtacagtggcataatcatggctcactgcagacttcatcttccgggctcaagcagtcttcccatttcagcctcccaaagtgttaggactacaggtgtgagtcactaca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28327718 147 -  71996105 ---gtattttttgagatgaggtctcactctgtcacccagac--tagtacagtggcataatcatggctcactgcagacttcatcttccgggctcaagcagtcttcccatttcagcctcccaaagtgttaggactacaggtgtgagtcactaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2007183 147 +   2316924 ---gtattttttgagatgaggtctcactctgtcacccagac--tagtacagtagcataatcatggctcactgcagacttcatcttccgggctcaagcagtcttcccatttcagcctcccaaagtgttaggactataggtgtgagtcactaca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1891897 147 -   3067355 ---gtattttttgagatgaagtctcactctgtcacccaggc--tagtacagtggcataatcatggctcactgcagacttcatctcccgggttcaagcagtcttcccatttcagcctcccaaagtgttaggattacaggtgtgagtcactaca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171413606 152 - 171630274 tttctgttttttgagatgaagtctcactctgtcacccagaccgtagtgcggtgccataatcatggctcactgcagacttgatctcctgggctccagcaatcctctcattccggccgcccaaagtgttaggagtacaggtgtgagccactcca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            240773 151 -    375362 tttttattttttgagatgaagtctcactctgtcacccagactgtagtgcagtggcataatcatggctcactatagacttgatctcctggactcaagcaatcctctcattttggctgcccaaagtgttaggagtaca-gtgtgagccactaca
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      239657 152 -    373274 tttttattttttgagatggagtctcactctgtcacccagactgtagtgcagtggcataatcatggctcactatagacttgatctcctggactcaagcaatcctctcatttcggccacccaaagtgttaggggtacaggtgtgagccactata
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      172780 150 -    285216 tttttattttttgagatgaagtctcactctgtcacccagactgtagtgcagtggcataatcatggctcact--agacttgatctcctgggctcatgcaattctctcatttcggccgcccaaagtgttaggaatacaggtgtgagccactaca
i aotNan1.NW_018494050v1   I 16 C 0
e dasNov3.JH561790             61279   0 -    302817 C
e proCoq1.NW_012147953v1      976591 563 -   3516910 I
e canFam3.chr35             25906276 269 +  26524999 I
e otoGar3.GL873742           1547513   0 -   2232465 C

a score=97493.000000
s hg38.chr6_GL000254v2_alt    171445 8 +   4827813 cccagcCC
s panTro5.chr6              29158944 8 + 175400573 cccagcCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29393113 8 + 173848474 cccagcCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5193618 8 +   6154872 cccagcCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74192322 8 + 122973662 cccagTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29370088 8 + 172585720 cccagcCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29030973 8 - 170955103 cccagcCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2011042 8 -   2996164 cccagcCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1882932 8 -   2157725 cccagcCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28327865 8 -  71996105 cccagcCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2007330 8 +   2316924 cccagcCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1892044 8 -   3067355 cccagcCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171413758 8 - 171630274 cccagcCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            240924 8 -    375362 ctcagcCC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      239809 8 -    373274 cccggcCC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      172930 8 -    285216 cccagcCC
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             61279 8 -    302817 CTCAGCTC
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      976591 563 -   3516910 I
e canFam3.chr35             25906276 269 +  26524999 I
e otoGar3.GL873742           1547513 0 -   2232465 C

a score=113005.000000
s hg38.chr6_GL000254v2_alt    171453 11 +   4827813 AAATCACTCTT---
s panTro5.chr6              29158952 11 + 175400573 AAATCACTCTT---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29393121 11 + 173848474 AAATCACTCTT---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5193626 11 +   6154872 AAATCACTCTT---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74192330 11 + 122973662 AAATCACTCTT---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29370096 11 + 172585720 AAATCACTCTT---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29030981 11 - 170955103 AAATCACTCTT---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2011050 11 -   2996164 AAATCACTCTT---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1882940 11 -   2157725 AAATCACTCTT---
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28327873 11 -  71996105 AAATCACTCTT---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2007338 11 +   2316924 AAATCACTCTT---
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1892052 11 -   3067355 AAATCACTCTT---
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171413766  9 - 171630274 AAATCACTC-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            240932 11 -    375362 AAATCACTCTT---
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      239817 11 -    373274 AAATCACTCTT---
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      172938 11 -    285216 AAATCACTCTT---
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25906545 11 +  26524999 AAAGCAGTCTT---
i canFam3.chr35            I 269 I 5
s dasNov3.JH561790             61287 11 -    302817 ---ATGTTTTTATG
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      976591 563 -   3516910 I
e otoGar3.GL873742           1547513  0 -   2232465 C

a score=2286251.000000
s hg38.chr6_GL000254v2_alt    171464 193 +   4827813 TTATCCATTCTATAAGATCTTTACTCTGCACATCGAAGCTC-TATTCATCTTCTTCTAATGTCCAGTCCAAAACACA---CA--TCCTCC-----AAGTTTTTCTTAAT--CTGCCCAGGCCATTACA--CTTACTGTTCTGAAATCTAAAACTGTGTATGACCCATGTCATCTCCTCTGGCATTTAGTATTACAGCATCTTGCTATC
s panTro5.chr6              29158963 195 + 175400573 TTATCCATTCTATAAGATCTTTACTCTGCACATCGAAGCTC-TATTCATCTTCTTCTAATGTCCAGTCCAAAACACA---CA--TCCTCC-----AAGTTTTTCTTAAT--CTGCCCAGGCCATTACACTCTTACTGTTCTGAAATCTAAAACTGTGTATGACCCATGTCATCTCCTCTGGCATTTAGTATTATAGCATCTTGCTATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29393132 195 + 173848474 TTATCCATTCTATAAGATCTTTACTCTGCACATCGAAGCTC-TATTCATCTTCTTCTAGTGTCCAGTCCAAAACACA---CA--TCCTCC-----AAGTTTTTCTTAAT--CTGCCCAGGCCATTACACTCTTACTGTTCTGAAATCTAAAACTGTGTATGACCCATGTCATCTCCTCTGGCATTTAGTATTATAGCATCTTGCTATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5193637 195 +   6154872 TCATCCATTCTATAAGATCTTTACTCTGCACATAGAAGCTC-TATTCATCTTCTTCTAATGTCCAGTCCAAAACACA---CA--TCCTCC-----AAGTTTTTCTTAAT--CTGCCCAGGCCATTACACTCTTACTGTTCTGAAATCTAAAACTGTGTATGACCCATGTCATCTCCTCTGGCATTTAGTATTACAGCATCTTGCTATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74192341 192 + 122973662 TTATCCATTCTATAAGATCTTTACTCTGCAGATCAAAGCTC-TATTCATCTTCTTCTAACGTCCAGTCCAAGACACG---CA--TCCTCC-----AAGTTTTCCTTAAT--CTGCCCAGGCCATTACACTCTTCCTGTTCTGAAATCTAAAACTGTGTATGACCCATGTCATCTCCTCTGGCATTTAGTATTACAGCATCTTGCT---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29370107 195 + 172585720 TTATCCATTCTATAAGATctttactctgcacatcaaagctc-tattcatcttcttctaatgtccactgcaagacaca---ca--tcctcc-----aagtttttcttaat--ctgcccaggccattacactcttcctgttctgaaatctgaaactatgtatgatccatgtcatctcctctggcatttagtATTACAGCATCTTGCTATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29030992 195 - 170955103 TTATCCATTCTATAAGATCTTTACTCTGCACATCAAAGCTC-TATTCATCTTCTTCTAATGTCCACTGCAAGACACA---CA--TCCTCC-----AAGTTTTTCTTAAT--CTGCCCAGGCCATTACACTCTTCCTGTTCTGAAATCTGAAACTATGTATGATCCATGTCATCTCCTCTGGCATTTAGTATTACAGCATCTTGCTATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2011061 195 -   2996164 TTATCCATTCTATAAGATctttactctgcacatcaaagctc-tattcatcttcttctaatgtccactgcaagacaca---ca--tcctcc-----aagtttttcttaat--ctgcccaggccattacactcttcctgttctgaaatctgaaactatgtatgatccatgtcatctcctctggcatttagtATTACAGCATCTTGCTATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1882951 195 -   2157725 TTATCCATTCTATAAGATctttactctgcacatcaaagctc-tattcatcttcttctaatgtccactgcaagacaca---ca--tcctcc-----aagtttttcttaat--ctgcccaggccattacactcttcctgttctgaaatctgaaactatgtatgatccatgtcatctcctctggcatttagtATTACAGCATCTTGCTATC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28327884 195 -  71996105 TTATCCATTCTATAAGATCTTTACTCTGCACATCAAAGCTC-TATTCATCTTCTTCTAATGTCCACTGCAAGACACA---CA--TCCTCC-----AAGTTTTTCTTAAT--CTGCCCAGGCCATTACACTCTTCCTGTTCTGAAATCTAAAACTATGTATGATCCATGTCATCTCCTCTGGCATTTAGTATTATAGCATCTTGCTATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2007349 195 +   2316924 TTATCCATTCTATAAGATctttactctgcacatcaaagctc-tattcatcttcttctaatgtccactgcaagacaca---ca--tccttc-----aagtttttcttaat--ctgcccaggccattacactcttcctgttctgaaatctgaaactatgtatgatccatgtcatctcctctggcatttagtATTACAGCATCTTGCTATC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1892063 192 -   3067355 TTATCCATTCTATAAGATCTTTActctgcatatcaaagctc-tattca---tcttctaatgtccactgcaagacaca---ca--tcctcc-----aagtttttcttaat--ctgcccaggccattacgctcttcctgttctgaaatctaaaactatgtatgacccatgtcatctcctctggcatttagtattacagcatcttgCTATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171413775 195 - 171630274 TTATCCATTCTGGAAGATTTTTACTCTGCACATCCAAGCCC-TATTCATCTTCTTCTAATGTCCAGTGCAAGACACA---CA--TCCTCC-----AAGTTTTTCTCCAT--CTCCCCAGGCCATTACATCCTTCCCGTTCCAAAATCTAAAACTGTGTATGACCCATGTCGTCTCCTCGGGCATTTAGTATCACAACATCTTGCTATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            240943 191 -    375362 TTATCCATTCTAGAAGATTTTTACTCTGCACATCCAAGCCC-TATTCTTCTTCTTCTAATGTCCAGTGCAAGATACA---CA--TCCTCC-----AAGTTTTCCTCCAT--CTCCCTAGGCCATTAAAACCTTCCTGTTCTGAAATCT-AAACTGTGTATGACCCATGTCATCTCCTCTGGCATTTAGTATCACAGCATCTTGCT---
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      239828 187 -    373274 TTATCCATTCT---AGATTTttactctgcacatccaagccc-tattca---tcttctaacatccagtgcaagacaca---ca--tcctcc-----aagtttttctccat--ctccctagaccattacaa-cttcctgttctgaaatct-aaactgtgtatgacccatgtcatctcctctggcaTTCAGTATCACAGCATCTTGCTATC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      172949 192 -    285216 TTATCCATTCTAGAAGATTTTTActctgcatatccaagccc-tattcatcttcttctaatgtccagtgcaagacaca---ca--tcctcc-----aagtttttttccat--ctccccaggccattacatccttcctgttctgaaatctaaaactgtgtatgacccacgtcatctcctctggcatttagtATCACAGCATCTTGCT---
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1547513 187 -   2232465 TTATCCATTCTAGGAGATCTTTACTCTCCACATTCAAACTCTTATTCGTCATCCTCTAATGTCTAGTTTAAGACCTACATCA--TCCTCA-----GAGTTTTTCTTAACAATTGCCCAAGCCATTGTACTTTTCCTTTTCTG-------------TGCATCA-CCATGTCATCTCCTCTGATATTTAGTATTACAGCATCTTGAAATG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25906561 196 +  26524999 TCCTCCATTCCATGAGATCTTTACTCAGCACATGCAAACCC-CATTCATCTCTTTCTAATGTCCAATACAACACCCA---CA--TCTTTCTCAAAAAGCTGCTGTCAAC--CAGCC-AAGTCATCACATGCTCTCT-CCCTTAAACCTAAAAC--TCTATCATCTGAGTCATGTACTTGGGTGATCAGTATGACAGCATTTTGCAGTC
i canFam3.chr35            I 5 C 0
s dasNov3.JH561790             61298 196 -    302817 TTCTCTGTTCCGTGGGCTCTTTACTGAGCACATCCAA-CCC-AATTTATCTCCTTGTAATACTCAGTACAAAGCCCA---CATCTCTTCA-----AAGCTTTTTTTAAC--CAGCCCAAGTCATATCACTGTCCGTTCTCTGAAATCCCAAACTGCAGCTCATCTGTGTCCCCTACTCTGGTATTCAATAgtacagcatcttgcagtc
i dasNov3.JH561790         C 0 I 6
e proCoq1.NW_012147953v1      976591 563 -   3516910 I

a score=220258.000000
s hg38.chr6_GL000254v2_alt    171657 21 +   4827813 ATCAAG----TGTTTTCCTGCTTCA
s panTro5.chr6              29159158 21 + 175400573 ATCAAG----TGTTTCCCTGCTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29393327 21 + 173848474 ATCAAG----TGTTTTCCTTCTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5193832 21 +   6154872 ATCAAG----TGTTTTCCTGCTTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74192533 21 + 122973662 ATCAAG----TGTTTTCCTGCTTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29370302 21 + 172585720 ATCAAG----TGTTTTCCTGCTTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29031187 21 - 170955103 ATCAAG----TGTTTTCCTGCTTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2011256 21 -   2996164 ATCAAG----TGTTTTCCTGCTTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1883146 21 -   2157725 ATCAAG----TGTTTTCCTGCTTCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28328079 21 -  71996105 ATCAAG----TGTTTTCCTGCTTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2007544 21 +   2316924 ATCAAG----TGTTTTCCTGCTTCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1892255 21 -   3067355 ATCAAG----TGTTTTCCTGCTTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171413970 21 - 171630274 ATCAAG----TTTTTTCTCAATTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            241134 21 -    375362 ATCAAG----TTTTTTCTCGCTTCA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      240015 21 -    373274 ATAAAG----TTTTTTCTCGCTTCA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      173141 21 -    285216 ATCAAG----TTTTTTCTCGCGTCA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1547700 25 -   2232465 ATATGGTTGCTGTttttctgtttta
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25906757 21 +  26524999 ATGTGG----TACTTTCCTGCTTTA
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             61494  6 -    302817 I
e proCoq1.NW_012147953v1      976591 563 -   3516910 I

a score=1816475.000000
s hg38.chr6_GL000254v2_alt    171678 188 +   4827813 AAAACACTGATAATGGGCTGGATATg-tggctcatgcctg-taatctcagcactttgggaagctgaggcaagaggattgcttgcatacaggagtttgagac-----------------------cctgtctctacaaaaaataaaagtaaaaaaattaggcaagcatggtggt---gcatgcctgtaattccagctactcaggaggctgaggcagg
s panTro5.chr6              29159179 188 + 175400573 AAAACACTGATAATGGGCTGGATATg-tggctcatgcctg-taatctcagcactttgggaagctgaggcaagaggattgcttgcatacaggagtttgagac-----------------------cctgtctctacaaaaaataaaagtaaaaaaattaggcaagcatggtggt---gcatgcctgtaattccggctactcaggaggctgaggcagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29393348 188 + 173848474 AAAACACTGATAATGGGCTGGATATg-tggctcatgcctg-taatctcagcactttgggaagctgaggcaagaggattgcttgcatacaggagtttgagac-----------------------cctgtctctacaaaaaataaaagtaaaaaaattaggcaagcatggtggt---gcatgcctgtaattccggctactcaggaggctgaggcagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5193853 188 +   6154872 AAAACACTGATAATGGGCTGGATATg-tggctcatgcctg-taatctcagcactttgggaagctgaggcaagaggattgcttgcatacaggagtttgagac-----------------------cctgtctctacaaaaaataaaagtaaaaaaattaggcaagcatggtggt---gcatgcctgtaattccagctactcaggaggctgaggcagg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74192554 188 + 122973662 AAAACACTGATAATGggccgggtatg-tggctcatgcctg-taatctcagcactttgggaagctgaggcaagaggattgcttgcatacaggagtttgagac-----------------------cctgtctctacaaaaaataaaagtaaaaaaattaggcaagcatggtggt---gcatgcctgtaattccagctactcgggaggctgaggcagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29370323 211 + 172585720 AAAACACTGATAATGggctgggtgtg-tgactcatgcctgttaatctcagcactttgggaagctaaggcaagaggatcgcttgcatacaggagtttgagactagcctgggcaacatagtgagaccctgtctctacaaaacataaaagt-aaaaatttaggcaagcacggtggt---gtgtgcctgtaattccagctactcaggaggctgaggcagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29031208 211 - 170955103 AAAACACTGATAATGggctgggtgtg-tgactcatgcctgttaatctcagcactttgggaagctaaggcaagaggatcgcttgcatacaggagtttgagactagcctgggcaacatagtgagaccctgtctctacaaaacataaaagt-aaaaatttaggcaagcacggtggt---gtgtgcctgtaattccagctactcaggaggctgaggcagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2011277 211 -   2996164 AAAACACTGATAATGggctgggtgtg-tgactcatgcctgttaatctcagcactttgggaagctaaggcaagaggatcgcttgcatacaggagtttgagactagcctgggcaacatagtgagaccctgtctctacaaaacataaaagt-aaaaatttaggcaagcacggtggt---gtgtgcctgtaattccagctactcaggaggctgaggcagg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1883167 211 -   2157725 AAAACACTGATAATGggctgggtgtg-tgactcatgcctgttaatctcagcactttgggaagctaaggcaagaggatcgcttgcatacaggagtttgagactagcctgggcaacatagtgagaccctgtctctacaaaacataaaagt-aaaaatttaggcaagcatggtggt---gtgtgcctgtaattccagctactcaggaggctgaggcagg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28328100 211 -  71996105 AAAACACTGATAATGggctgggtgtg-tgactcatgcctgttaatctcagcactttgggaagctaaggcaagaggatcgcttgcatacaggagtttgagactagcctgggcaacatagtgagatcctgtctttacaaaacataaaagt-aaaaatttaggcaagcatggtggt---gtgtgcctgtaattccagctactcaggaggctgaggcagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2007565 211 +   2316924 AAAACACTGATAATGggctgggtgtg-tgactcatgcctgttaatctcagcactttgggaagctaaggcaagaggatcgcttgcatacaggagtttgagactagcctgggcaacatagtgagaccctgtctctacaaaacataaaagt-aaaaatttaggcaagcatggtggt---gtgtgcctgtaattccagctactcaggaggctgaggcagg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1892276 211 -   3067355 AAAACACTGATAATGggctgggtgtg-tgactcatgcctgttaatctcagcactttgggaagctaaggcaagaggatcgcttgcatacaggagtttgagaccagcctgggcaacatagtgagaccctgtctctacaaaaaatacaagt-aaaaatttaggcaagcatggtggt---gtatgcctgtaattccagctactcaggaggctgaggcagg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171413991 209 - 171630274 GAAGCACTGAT-TGGggctgggtgtg-cagctcatgcctg-taatctcagcactttgggaatctgaggcaagaggatcacttgcgtacaggagtttgagaccagcctgggcagcatagtgagacccagtctctacaaaaaataaaagt----aaattaggcaaacatggtggtcgcatgtgcttataatcccagctactcagaaggctgaggcagg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            241155 206 -    375362 GAAGCACTGAT-ACGggctgggtgtg-tggctcatgtctg-taatctcagcacttggggaagctgaggcaagaggactgcttgcctacatgagtttgagaccagtctgggaagcatagtgagaccctgtctctacgaaaaataaaagt----aaattaggcaagcatggtggt---gcatgcttataatcccagctactcagaaagctgaggcagg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      240036 206 -    373274 GAAGCACTGAT-ACGggctgggtgtg-tggctcatgcctg-taatctcagcactttgggaagctgaggcaagaggattgcttgcgtacaggagtttgagaccagtctgggcagcatagtgagaccctgtctctacgaaaaataaaagt----aaattaggcaagcgtggtggt---gcatgcttataatcccagcttctcagaaggctgaggcagg
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      173162 206 -    285216 GAAGCACTGAT-ACGggctgggtgtg-tggctcatgcctg-taatctcagcactttgggaagctgaggccagaggatcgcttgcgtacgggagtttgagaccagcctgggcagcacagtgagaccttgtctctacaaaaaataaaagt----aaattaggcaagcatggtggt---gcatgcttataatcccagctactcaggaggctaaggcagg
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1547725  95 -   2232465 aaagcattgat----------atatattttctcatt-----tgctcttcatatcttg---------ttcagaagga-------------ggattctaaaac-----------------------atgatctctc--agaaatcaaagc-------tcagacagg----------------------------------------------------
i otoGar3.GL873742         C 0 I 24
e dasNov3.JH561790             61494   6 -    302817 I
e proCoq1.NW_012147953v1      976591 563 -   3516910 I
e canFam3.chr35             25906778   0 +  26524999 C

a score=1008798.000000
s hg38.chr6_GL000254v2_alt    171866 109 +   4827813 aggatcacttgagcccaggagtatgaggctgcagcaagctatcaccatgccactgcacaccagcctgggcaacagagaacctgcctctaaaatg---aataataaaaaattt
s panTro5.chr6              29159367 109 + 175400573 aggatcacttgagcccaggagtatgaggctgcagcaagctatcaccatgccactgcacaccagcctgggcaacagagaagctgcctctaaaatg---aataataaaaaattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29393536 109 + 173848474 aggatcacttgagcccaggagtatgaggctgcagcaagctatcaccatgccactgcacaccagcctgggcaacagagaacctgcctctaaaatg---aataataaaaaaTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5194041 109 +   6154872 aggatcacttgagcccaggagtatgaggctgcagcaagctatcaccatgccactgcacaccagcctgggcaacagagaacctgcctctaaaatg---aataataaaaaattt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74192742 112 + 122973662 aggatcacttgagcccaggagaatgaggctgcagcaagctatcaccatgccactgcacaccagcctgggcaacagagaacccgcctctaaaatgaataataataaaaaattt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29370534 109 + 172585720 aggatcacttgagcccaggagttcgagcctgtagcaagctatgatcacgccactacacaccagcctgggcaacagagaacctgcctctaaaatg---aataataaaaaaTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29031419 109 - 170955103 aggatcacttgagcccaggagttcgagcctgtagcaagctatgatcacgccactacacaccagcctgggcaacagagaacctgcctctaaaatg---aataataaaaaaTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2011488 109 -   2996164 aggatcacttgagcccaggagttcgagcctgtagcaagctatgatcacgccactacacaccagcctgggcaacagagaacctgcctctaaaaTG---AATAATAAAATATTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1883378 109 -   2157725 aggatcacttgagcccaggagttcgagcctgtagcaagctatgaccacgccactacacaccagcctgggcaacagagaacctgcctctaaaatg---aataataaaaaaTTT
i cerAty1.NW_012001495v1   C 0 I 685
s chlSab2.chr17             28328311 109 -  71996105 aggatcacttgggcccaggagttcgagcctgtagcaagctatgaccacgccactacacaccagcctgggcaacagagaacctgcctctaaaatg---aataataaaaaattt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2007776 109 +   2316924 aggatcacttgagcccaggagttcgagcctgtagcaagctatgaccacgccactacacaccagcctgggcaacagagaacctgcctctaaaatg---aataataaaaaaTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1892487 109 -   3067355 aggatcacttgagcccaggagtttgagcctgcagcaagctatgaccacgccactacccgccagcctgggcaacagagaacctgcctctaaaaTG---AATAATAAAGTATTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171414200 103 - 171630274 aggatcgcttgaaccctggagtctggggctgcagtgagctatgacctcg-----gcataccagcctgggcaacagagAACCCACCTCTAAACTG---aataataaaaatgt-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            241361 108 -    375362 aggatcacttgaacccaggagtctgaggctgcagtgagctatgaccacgccactgaataccagcctgggcaacagagAACCCGCCTCTAAACTG---AGtaataaaaatgt-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      240242 108 -    373274 aggatcacttgaacccagaagtctgaggctgcagtgagatatgaccacgccattgcataccagcctgggcaacagagAACCCGCCTCTAAACTG---AATAATAAAAATGT-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      173368 108 -    285216 aggatcacttgaacccaggaatctgaggcagcagtgagctatgaccacgccactgcataccagcctgggcaacagagAACCCGCCTCtaaactg---aataataaaaatgt-
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             61494   6 -    302817 I
e proCoq1.NW_012147953v1      976591 563 -   3516910 I
e canFam3.chr35             25906778   0 +  26524999 C
e otoGar3.GL873742           1547820  24 -   2232465 I

a score=131413.000000
s hg38.chr6_GL000254v2_alt    171975 27 +   4827813 aaaaaaTTAaaat-aat-a--------aataaataaa
s panTro5.chr6              29159476 27 + 175400573 aaaaaaTTAaaat-aat-a--------aataaataaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29393645 27 + 173848474 taaaaattaaaat-aat-a--------aataaataaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5194150 27 +   6154872 aaaaaaTTAaaat-aat-a--------aataaataaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74192854 29 + 122973662 aaaaaaTTAAAATCAATAA--------AATAAATACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29370643 27 + 172585720 TAAAAAGTAAAAT-ACT-C--------AAAAAAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29031528 27 - 170955103 TAAAAAGTAAAAT-ACT-C--------AAAAAATAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2011597 27 -   2996164 TAAAAAGTAAAAT-ACT-C--------AAAAAATAAA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28328420 27 -  71996105 aaaaaaGTAAAAT-ACT-C--------AAAAAATAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2007885 27 +   2316924 TAAAAAGTAAAAT-ACT-C--------AAAAAATAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1892596 27 -   3067355 AAAAAATTAAAAT-ACT-C--------AAAAAATAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171414303 19 - 171630274 taaaaattaaaat------------------aataaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            241469 20 -    375362 taaaaattaaaat-----------------aaataaa
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      240350 27 -    373274 TAAAAACTAAAAT-ACT-C--------AATAAATAAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      173476 35 -    285216 taaaaattaaaat-act-caataaataaataaataaa
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             61494  6 -    302817 I
e proCoq1.NW_012147953v1      976591 563 -   3516910 I
e canFam3.chr35             25906778  0 +  26524999 C
e otoGar3.GL873742           1547820 24 -   2232465 I
e cerAty1.NW_012001495v1     1883487 685 -   2157725 I

a score=27996.000000
s hg38.chr6_GL000254v2_alt    172002  7 +   4827813 t-------aaaAAT
s panTro5.chr6              29159503  7 + 175400573 t-------aaaAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29393672  7 + 173848474 t-------aaaAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5194177  7 +   6154872 t-------aaaAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74192883  7 + 122973662 T-------AAAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29370670 14 + 172585720 TTAATTTAAAAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29031555 14 - 170955103 TTAATTTAAAAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2011624 14 -   2996164 TTAATTTAAAAAAC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28328447 14 -  71996105 TTAATTTAAAAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2007912 14 +   2316924 TTAATTTAAAAAAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1892623 14 -   3067355 TTAATTAAAAAAAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171414322  7 - 171630274 t-------aaaGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            241489  7 -    375362 t-------aaaGGC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      240377  7 -    373274 T-------AAAGAC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      173511  7 -    285216 t-------gaaGAC
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             61500  7 -    302817 t-------acaagc
i dasNov3.JH561790         I 6 C 0
e proCoq1.NW_012147953v1      976591 563 -   3516910 I
e canFam3.chr35             25906778  0 +  26524999 C
e otoGar3.GL873742           1547820 24 -   2232465 I
e cerAty1.NW_012001495v1     1883487 685 -   2157725 I

a score=-5241.000000
s hg38.chr6_GL000254v2_alt    172009 2 +   4827813 --AC
s panTro5.chr6              29159510 2 + 175400573 --GC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29393679 2 + 173848474 --GC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5194184 2 +   6154872 --AC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74192890 2 + 122973662 --AC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29370684 2 + 172585720 --AG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29031569 2 - 170955103 --AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2011638 2 -   2996164 --AG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28328461 2 -  71996105 --AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2007926 2 +   2316924 --AG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1892637 2 -   3067355 --AG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171414329 2 - 171630274 --AA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            241496 2 -    375362 --AA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      240384 2 -    373274 --AA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      173518 2 -    285216 --AA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      977154 2 -   3516910 --AC
i proCoq1.NW_012147953v1   I 563 C 0
s dasNov3.JH561790             61507 2 -    302817 tc--
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25906778 0 +  26524999 C
e otoGar3.GL873742           1547820 24 -   2232465 I
e cerAty1.NW_012001495v1     1883487 685 -   2157725 I

a score=526583.000000
s hg38.chr6_GL000254v2_alt    172011 43 +   4827813 TGATATGTATTCTCTCATTTGCTCCTCACA--TCTTGTTCAGGAG
s panTro5.chr6              29159512 43 + 175400573 TGATATGTATTCTCTCATTTGCTCCTCACA--TCTTGTTCAGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29393681 43 + 173848474 TGACATGTATTCTCTCATTTGCTCCTCACA--TCTTGTTCAGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5194186 43 +   6154872 TGATATGTATTCTCTCATTTGCTCCTCACA--TCTTGTTCAGGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74192892 43 + 122973662 TGGTATGTATTCTCTCATTTGCTCCTCACA--TCTTGTTCAGGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29370686 43 + 172585720 TGATATGTATTCTCTCATTTGCTCTTCACA--TCTTGTTCAGGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29031571 43 - 170955103 TGATATGTATTCTCTCATTTGCTCTTCACA--TCTTGTTCAGGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2011640 43 -   2996164 TGATATGTATTCTCTCATTTGCTCTTCACA--TCTTGTTCAGGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1884172 43 -   2157725 TGATATGTATTCTCTCATTTGCTCTTCACA--TCTTGTTCAGGAG
i cerAty1.NW_012001495v1   I 685 C 0
s chlSab2.chr17             28328463 43 -  71996105 TGATATGTATTCTCTCATTTGCTCTTCACA--TCTTGTTCAGGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2007928 43 +   2316924 TGATATGTATTCTCTCATTTGCTCTTCACA--TCTTGTTCAGGAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1892639 43 -   3067355 TGATATGTATTCTCTCATTTGCTCTTCACA--TCTTGTTCAGGAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171414331 43 - 171630274 TGACATGTATTCTCTCATTTGCACTCCGCA--TCTTGTTCAGGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            241498 41 -    375362 TGAC--GTATTCTCTCATTTGCACTCCGCA--TCTTGTTCAGGAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      240386 43 -    373274 TGACATGTATTCTCTCATTTGCACTCCGCA--TCTTGTTCAGGAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      173520 43 -    285216 TGACATGTATTCTCTCATTTGCACTCTGCA--TCTTGTTCAGGAG
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      977156 43 -   3516910 TGATATGTATGCTAACATTTGCTCTTCACA--TCTTGTTCAGGAG
i proCoq1.NW_012147953v1   C 0 I 69
s dasNov3.JH561790             61509 45 -    302817 tgatacatattctctcagttgctcttcaccatccttgctgaggag
i dasNov3.JH561790         C 0 I 1
e canFam3.chr35             25906778  0 +  26524999 C
e otoGar3.GL873742           1547820 24 -   2232465 I

a score=76607.000000
s hg38.chr6_GL000254v2_alt    172054 10 +   4827813 ---GAAGAGTCCC---
s panTro5.chr6              29159555 10 + 175400573 ---GAAGAGTCCC---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29393724 10 + 173848474 ---GAAGAGTCCC---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5194229 10 +   6154872 ---GAAGAGTCCC---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74192935 10 + 122973662 ---GAAGAGTCCC---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29370729 10 + 172585720 ---GAAGATTCCC---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29031614 10 - 170955103 ---GAAGATTCCC---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2011683 10 -   2996164 ---GAAGATTCCC---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1884215 10 -   2157725 ---GAAGATTCCC---
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28328506 10 -  71996105 ---GAAGATTCCC---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2007971 10 +   2316924 ---GAAGATTCCC---
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1892682  6 -   3067355 ---GAAGAT-------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171414374 10 - 171630274 ---GAAGATTACC---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            241539 10 -    375362 ---GAAGATTACC---
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      240429 10 -    373274 ---GAAGATTACC---
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      173563 10 -    285216 ---GAAGATTACC---
i aotNan1.NW_018494050v1   C 0 I 37
s dasNov3.JH561790             61555 16 -    302817 gaggaggatcactctc
i dasNov3.JH561790         I 1 C 0
e proCoq1.NW_012147953v1      977199 69 -   3516910 I
e canFam3.chr35             25906778  0 +  26524999 C
e otoGar3.GL873742           1547820 24 -   2232465 I

a score=440298.000000
s hg38.chr6_GL000254v2_alt    172064 48 +   4827813 AAACATTACCTCTCAGAAATTTAAGCCCACAAATTT---TTA----CTCCCACAA
s panTro5.chr6              29159565 48 + 175400573 AAACATTACCTCTCAGAAATTTAAGCCCACAAATTT---TTA----CTCCCACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29393734 48 + 173848474 AAACATTACCTCTCAGAAATTTAAGCCCACAAATTT---TTA----CTCCCACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5194239 48 +   6154872 AAACATTACCTCTCAGAAATTTAAGCCCACAAATTT---TTA----CTCCCACAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74192945 48 + 122973662 AAACATTACCCCTCAGAAATTTAAGCCCACAAATTT---TTA----CTCTCACAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29370739 48 + 172585720 AAACATTACCTCTTAGAAATTTAAGCCCACAAATTT---TGA----CTCCCACAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29031624 48 - 170955103 AAACATTACCTCTTAGAAATTTAAGCCCACAAATTT---TGA----CTCCCACAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2011693 48 -   2996164 AAACATTACCTCTTAGAAATTTAAGCCCACAAATTT---TGA----CTCCCACAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1884225 48 -   2157725 AAACATTACCTCTTAGAAATTTAAGCCCACAAATTT---TGA----CTCCCACAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28328516 48 -  71996105 AAACATTACCTCTTAGAAATTTAAGCCCACAAATTT---TGA----CTCCCACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2007981 48 +   2316924 GAACATTACCTCTTAGAAATTTAAGCCCACAAATTT---TGA----CTCCCACAA
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171414384 48 - 171630274 AAATATTACCTCTCAGAAATTTAAGCCCACCAATTT---TGA----CTCCCACAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            241549 48 -    375362 AAATATTACCTCTCAGAAATTTAGGCCCACAAATTT---TGA----CTGCTACAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      240439 48 -    373274 AAAAACTACCTCTCAGAAATGTAGGCCCACAAATTT---TGA----CTCCCACAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      173610 48 -    285216 TAATATTACCTCTCAGAAATTTAAGCCCACAAATTT---TGA----CTCCCACAG
i aotNan1.NW_018494050v1   I 37 C 0
s canFam3.chr35             25906778 51 +  26524999 AAACATTCTCTCTC-TAAACCACAGCTCAGACAGGC---TAAATGGCCTCCATGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             61571 51 -    302817 caacatcagccctcagaaaatgaagctcgggcaggtaaatga----cgccaacaa
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      977199 69 -   3516910 I
e otoGar3.GL873742           1547820 24 -   2232465 I
e colAng1.NW_012115566v1     1892688  0 -   3067355 C

a score=972331.000000
s hg38.chr6_GL000254v2_alt    172112 82 +   4827813 -------AAGAC------AGGCAACTGA----TAGAGGTAACCAAGAACCCCAGAACCCTTGGCTCCTGGTTCAACAATCTGTCTACAACAGCTGCCTA
s panTro5.chr6              29159613 82 + 175400573 -------AAGAC------AGGCAACTGA----TAGAGGTAACCAAGAACCCCAGAACCCTTGGCTCCTGGTTCAACAATCTGTCTACAACAGCTGCCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29393782 82 + 173848474 -------AAGAC------AGGCAACTGA----TAGAGGTAACCAAGAACCCCAGAACCCTTGGCTCCTGGTTCAACAATCTGTCTACAACACCTGCCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5194287 82 +   6154872 -------AAGAC------AGGCAACTGG----TAGAGGTAACCAAGAACCCCAGAACCCTTGGTTCCTGGTTCAACAATCTGTCTACAACAGCTGCCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74192993 82 + 122973662 -------AAGAC------AGGCAACTGG----CAGAGGTAACCAAGAACCGCAGAACCCTTGGTTCCTGGTTCAACAATCTGTCTACAACAGTTGCCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29370787 82 + 172585720 -------AAGAC------AGGCAACTGG----TAGAGATAACCAAGAACCCCAGAACCCTTGGTTCCCGGTTCAACAATCTGTCTACAACACGTGCCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29031672 82 - 170955103 -------AAGAC------AGGCAACTGG----TAGAGATAACCAAGAACCCCAGAACCCTTGGTTCCCGGTTCAACAATCTGTCTACAACACGTGCCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2011741 82 -   2996164 -------AAGAC------AGGCAACTGG----TAGAGATAACCAAGAACCCCAGAACCCTTGGTTCCCGGTTCAACAATCTGTCTACAACACGTGCCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1884273 82 -   2157725 -------AAGAC------AGGCAACTGG----TAGAGATAACCAAGAACCCCAGAACCCTTGGTTCCCGGTTCAACAATCTGTCTACAACACGTGCCTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28328564 82 -  71996105 -------AAGAC------AGGCAACTGG----TAGAGATAACCAAGAACCCCAGAACCCTTGGTTCCCGGTTCAACAATCTGTCTACAACACGTGCCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2008029 82 +   2316924 -------AAGAC------AGGCAACTGG----TAGAGATAACCAAGAACCCCAGAACCCTTGGTTCCCGGTTCAACAATCTGTCTACAACACGTGCCTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1892688 51 -   3067355 ------------------------------------------------CCCCAGAACCCTTGGTTCCCGGTTCAACAATCTGTCTACAACACGTGCCTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171414432 86 - 171630274 -------AAGAC------AGGCAACTTGGTTACCTCTGTAACCAAGAACCCCAGAACCCTTAGTTCCTGGTTCAATAATCTGTCTACCACAGCTGCCTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            241597 81 -    375362 -------AAGAC------AGGCAACTGG----CAGAGGTAACCAAGAACCCCAGCA-ACTCAGTTCCTGGTTCAATAATCTGCCTACGACAGCTGCCTA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      240487 80 -    373274 -------AAGAC------AGGCAACTGG----CAGAGGTAACCAAGAACCCCAGAG--CTCAGTTCCTGGTTCAATAATCTGCCTACGACAGCTGCCCA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      173658 82 -    285216 -------AAGAC------GGGCAACTGG----TAGAGGTAACCAAGAACCCCAGAACCCTTAGTTCCTGGTTCAATAATCTGTCTACAACAGCTGCCTA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      977268 82 -   3516910 -------AAGAC------AGGCAACGAG----TGGAGGTGACCAAGAACCCCACAACCCTTGGTTCTTGGTTCAACAATCTGTCCACAATGGCTGCCTA
i proCoq1.NW_012147953v1   I 69 I 1018
s otoGar3.GL873742           1547844 74 -   2232465 -------GAGAC------AGGCAACCTA----TGGAGGTGACCAAGAACCTTAGAACCCTC--------TTTCAACAATCTGTCCACAATGGCTACCTA
i otoGar3.GL873742         I 24 C 0
s canFam3.chr35             25906829 81 +  26524999 -------AAGGTTCACGAAAGCAACTGA----------TAACCAGGAGCCCCAG-ATCGTAGATTTGTGGTTCAACAACCTGTGTACAGCAGCGCCCTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             61622 88 -    302817 aaggttcatgag------aagtgactgg----tggaggcaatcaagacccccagag-gctcggtccttggtccagcaatctgtccacAATAGCCGCCCA
i dasNov3.JH561790         C 0 C 0

a score=3346964.000000
s hg38.chr6_GL000254v2_alt    172194 346 +   4827813 CCTTCTTCTTGTGTCATGGGT-------ATAcctccaaccagacaatgtaaaccccaagagtaggatgacttatgctcttctgttcctctaaaataccctgcaca-atgttaggcagtgtaggatac-aagcaaagtactc-atttaatac--ttgttgaaa---ataaatATGGA---------------------------------------------------------TCAGAGCCACTGCACACCAAG-GACTGC------------------------------AGATC---------------------------CACTGTATGTAGAGTCCTTCTCTTCATTTAGAGGATAATTCA-TAACAGAAGGTGA--C--TGTGACTATGGGACGAATACACCTTAGATTTGAATACTTCTGCAATGTTAAATTTACCCAGGCTCT-------ATAG---TAGGGTGAAAGCGGTTGTGAGGGGGAA
s panTro5.chr6              29159695 346 + 175400573 CCTTCTTCTTGTGTCATGGGT-------ATACctccaaccagacaatgtaaaccccaagagtaggatgacttatgctcttctgttcctctaaaataccctgcaca-atgttaggcagtgtaggatac-aagcaaagtactc-atttaatac--ttgttgaAA---TTAAATATGGA---------------------------------------------------------TCAGAGCCACTGCACACCAAG-GACTGC------------------------------AGATC---------------------------CACCGTATGTAGAGTCCTTCTCTTCATTTAGAGGATAATTCA-TAACAGAAGGTGA--C--TGTGACTGTGGGACGAATACACCTTAGATTTGAGTACTTCTGCAATGTTAAATTTACCCAGGCTCT-------ATAG---TAGGGTGAAAGCAGTTGTGAGGGGTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29393864 346 + 173848474 CCTTCTTCTTGTGTCATGGGT-------ATACctccaaccagacaatgtaaaccccaagagtaggatgacttatgctcttctgttcctctaaaataccctgcaca-atgttaggcagtgtaggatac-aagcaaagtactc-atttaatac--ttgttgaAA---TTAAATATGGA---------------------------------------------------------TCAGAGCCACTGCACACCAAG-GACTGC------------------------------AGATC---------------------------CACTGTATGTAGAGTCCTTCTCTTCATTTAGAGGATAATTCA-TAACAGAAGGTGA--C--TGTGACTGTGGGACGAATACACCTTAGATTTGAGTACTTCTGCAATGTTAAATTTACCCAGGCTCT-------ATAG---TAGGGTGAAAGCAGTTGTGAGGGGTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5194369 346 +   6154872 CCTTCTTCTTGTGTCATGGGT-------ATACctccaaccagacaatgtaaaccccaagagtaggatgacttatgctcttctgttcctctaaaataccctgcaca-atgttaggcagtgtaggatac-aagcaaagtactc-atttaatac--ttgttgaAA---TTAAATATGGA---------------------------------------------------------TCAGAGCCACTGCACACCAAG-GACTGC------------------------------AGATC---------------------------CACTGTATATGAAGTCCTTCTCTTCATTTAGAGGATAATTCA-TAACAGAAGGTGA--C--TGTGACTGTGGGACGAATACACCTTAGATTTGAGTACTTCTGCAATGTTAAATTTACCCAGGCTCT-------ATAG---TAGGGTGAAAGTGGTTGTGAGGGGGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74193075 343 + 122973662 CCTTCTTCTTGTGTCATGGGT-------ATAcctccaaccagacaatgtaaaccccaagagtaggatgacttacgcttttctgttcctctaaaataccctgcaca----ttaggcagtgtaggatac-aagcaaagtactc-agttaatac--ttgttgaaA---TTAAATATGGA---------------------------------------------------------TCAGAGCCAGTGCACACCCAG-GACTGC------------------------------AGATC---------------------------CACTGTATGTAAAGTCCTTCTCTTCATTTAGAGGACACTTCA-TAACAGAAGGTGA--C--TGTGACTGTGGGACGAATACACCTTAGATTTGAGTACTTCTGCAATGTTAAATTAACCCAGGCTCT-------ACAG---CAGGGTGAAAGTGGTTGTGAGGGGGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29370869 345 + 172585720 CCTCCTTCTTGTGTCATGGGt-------gtatctccaaccagacaatgtaaaccccatgagtaggatgatttatgcccttctgttcctctaaaataccctgtaca-atgttaggcagtgtaggatac-aagcgaagtactc-agttaatac--ttgttgaAA----TAAATATGGA---------------------------------------------------------TCAGAGCCAGCGCACACCCAG-GACTGC------------------------------AGATC---------------------------CACTGTATGTCGAGTCCTTCTCTTCATTTAGAGGACACTTCA-TAACAGAAGGTGA--C--TGTGACTGCGGGATGAATACACCTTGGATTTGAGGACTTCTGCAATGTTAAATTTACCCAGGCTCT-------ACAG---TAGGGTGAAAGTGGTTGTGAAGGGGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29031754 345 - 170955103 CCTCCTTCTTGTGTCATGGGT-------GTATCTCCAACCAGACAATGTAAACCCCATGAGTAGGATGATTTATGCCCTTCTGTTCCTCTAAAATACCCTGTACA-ATGTTAGGCAGTGTAGGATAC-AAGCGAAGTACTC-AGTTAATAC--TTGTTGAAA----TAAATATGGA---------------------------------------------------------TCAGAGCCAGCGCACACCCAG-GACTGC------------------------------AGATC---------------------------CACTGTATGTCGAGTCCTTCTCTTCATTTAGAGGACACTTCA-TAACAGAAGGTGA--C--TGTGACTGCGGGATGAATACACCTTGGATTTGAGGACTTCTGCAATGTTAAATTTACCCAGGCTCT-------ACAG---TAGGGTGAAAGTGGTTGTGAAGGGGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2011823 345 -   2996164 CCTCCTTCTTGTGTCATAGGt-------gtatctccaaccagacaatgtaaaccccatgagtaggatgatttatgcccttctgttcctctaaaataccctgtaca-atgttaggcagtgtaggatac-aagcgaagtactc-agttaatac--ttgttgaAA----TAAATATGGA---------------------------------------------------------TCAGAGCCAGCACACACCCAG-GACTGC------------------------------AGATC---------------------------CACTGTATGTCGAGTCCTTCTCTTCATTTAGAGGACACTTCA-TAACAGAAGGTGA--C--TGTGACTGCGGGATGAATACACCTTGGATTTGAGGACTTCTGCAATGTTAAATTTACCCAGGCTCT-------ACAG---TAGGGTGAAAGTGGTTGTGAAGGGGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1884355 345 -   2157725 CCTCCTTCTTGTGTCATGGGt-------gtatctccaaccagacaatgtaaaccccatgagtaggatgatttatgcccttctgttcctctaaaataccctgtaca-atgttaggcagtgtaggatac-aagcgaagtactc-agttaatac--ttgttgaAA----TAAATATGGA---------------------------------------------------------TCAGAGCCAGCGCACACCCAG-GACTGC------------------------------AGATC---------------------------CACTGTATGTAGAGTCCTTCTCTTCATTTAGAGGACACTTCA-TAACAGAAGGTGA--C--TGTGACTGCGGGATGAATACACCTTAGATTTGAGGACTTCTGCAATGTTAAATTTACCCAGGCTCT-------GCAG---TAGGGTGAAAGTGGTTGTGAAGGGGAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28328646 343 -  71996105 CCTCCTTCTTGTGTCATGGGT-------GTATCTCCAACCAGACAATGTAAACCCCATGAGTAGGATGATTTATGCCCTTCTGTTCCTCTAAAATACCCTGTACA-ATGTTAGGCGGTGTAGGATAC-AAGCGAAGTACTC-AGTTAATAC--TTGTTGAAATAATTAAATATGGA---------------------------------------------------------TCAGAGCCAGCGCACACCCAG-GACTGC------------------------------AGATC---------------------------CACTGTATGTAGAGCCCTTCTCTTCATTTAGAGGACACTTCA-TAACAGAAGGTGA--C--TGTGACTGCAGGATGAATACACCTTAGATTTGAGTACTTCTGCAATGTTAAATTTACCCAGGGTCT----------------AAGTGAAAGTGGTTGTGAGGGGGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2008111 345 +   2316924 CCTCCTTCTTGTGTCATGGGt-------gtatctccaaccagacaatgtaaaccccatgagtaggatgatttatgcccttctgttcctctaaaataccctgtaca-atgttaggcagtataggatac-aagcgaagtactc-agttaatac--ttgttgaAA----TAAATATGGA---------------------------------------------------------TCAGAGCCAGCGCACACCCAG-GACTGC------------------------------AGATC---------------------------CACTGTATGTAGAGTCCTTCTCTTCATTTAGAGGACACTTCA-TAACAGAAGGTGA--C--TGTGACTGCGGGATGAATACACCTTAGATTTGAGGACTTCTGCAATGTTAAATTTACCCAGGCTCT-------GCAG---TAGGGTGAAAGTGGTTGTGAAGGGGAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1892739 349 -   3067355 CCTCTATCTTGTGTCATGGgt-------gtatctccaaccagacaatgtaaaccccatgagtaggatgatttatgctcttctgttcctctaaaataccctgtaca-acgttaggcagtgtaggatac-aagtgaagtactc-agttaatac--ttcttgaaataattaaatACGGA---------------------------------------------------------TCAGAGCCAGTGCACACCCAG-GACTGC------------------------------AGATC---------------------------CACTGTATGGACAGTCCTTCTCTTCATTTAGAGGACACTTCA-TAACAGAAGGTGA--C--TGTGACTGTGGGATGAATACACCTTAGATTTGAGTACTTCTGCAATGTTAAATTTACCCAGGCTCT-------ACAG---TAGGGTGAAAGTGGTTGTGAGGGGGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171414518 349 - 171630274 CCTCGTTCTTGTGCCATGTGT-------ACACCTCCAGACAGACaatgtaaaccccaagagtaggatgttgtaggctcttctgctcctctaagataccctgcaca-atgttaggcagtgcaggacac-aagcgaggtactc-gggaaatac--tcgctgaacgaattaaATAAGGA---------------------------------------------------------TCAGAGCCAGTGCCCACCAAG-GACTGA------------------------------AGATC---------------------------CACTGTATGTAGAGTTCTTCTCTTCATGAAGAGGACGCTTCG-GAACAGAAGGCGGCTC--TGTGACTGTGGGAGGAATACGCCTTTGATCTGAGGACTTCCGCAATGTTAAATTTTCCCAGGCTCT-------GCCG---TAGGGTGAAAATGGT--CGAGGGGGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            241678 328 -    375362 CCTCGTGCTTGTGCCACGTGT-------ACACTTCCAGACAGACAACGTAAACCCCAAGAGTAGGATGCCGTAGGCTCTTCTGCTCCTCTGAAATACCCTGCACA-ATGTCAGGCAGCGCAGGACAC-AAGCGAGGTACTCAGGAAAATAC--TCGCGGAAAGAATTAAATAAGGA---------------------------------------------------------TCAGAGCCAGTGCGCACCAAG-GACTGC------------------------------AGATC---------------------------CACTGT-------------------ATGAAGAGGACGCTTCA-GAACAGAAGGCGG--C--TGTGACTGTGGGACGAATACACCTTTGATCTGAGGACTCCTGCAAGGTTAAATTTTCCCAGGCTCT-------ACCG---TAGGGTGAAAATGGT--TGA-GAGGAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      240567 336 -    373274 CCTCGTGCTTGTGCCATGTAT-------ACACCTCCAAACAGACAACGTAAACCCCAAGAGCAGGATGCCGTAGGGTCTTCTGCTTCTCTAAAATACCCTGCACG-ATGTTAGGCAGCGCAGGACAC-AAGTGAGGTACTC-GGGAAATAC-------------ATTAAACATGGA---------------------------------------------------------TCAGAGCCAGTGCACACCACG-GACTGC------------------------------AGAAC---------------------------CACTGTATGCAGAGTCCTTCTCTTCATGAAGAGGACGCTTCA-TAACAGAAGGCGG--C--TGTGACTGTGGGACGAATATGCCTTTGATCTGAGGACTTCCGCAATGTAAAATTTTCCCAGGCTCT-------ACCG---TAGGGTGAAAATGGT--TGAGGGGGAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      173740 350 -    285216 CCTCGTTCTCGTGCCGTGCGC-------ACACCTCCAAACAGACAATGTAAACCCCAAAAGGAGGATGTCATAGGCTCTTCTGCTCCTCTAAAATACCCTGCACA-ATGTTAGGCAGTGCAGGACAC-AAGCGAGGTACTC-GGAAAATAC--TCGCTGAAAGAATTAAATAAGGA---------------------------------------------------------TCAGAGCCAGTGTGCACCAAG-GACGGC------------------------------AGATC---------------------------CACTGTATGTAGAGTCCTTCTCTTCATGAAGAGGACACTTCGTTAACAGAAGGCAGTTC--TGTGACCGTGGGAGGAATACGCCTTTGATCTGAGGACTTCCACAATGGTAAATTTTCCCAGGCTCT-------ACCG---TAGGGTGAAAATGGC--TGAGGGGGAA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1547918 469 -   2232465 TCTCTTTCTTGTGTCATGGGTATATCTCATACCTCCAACCAAACAATGCAAACTGCAAGAGTAGAATTTCTCATACTCTGTGTTCCCTCTAAAGTACCCTGCACAAATATCAGACAATGTAGGATGCTATGTAAGGTACTC-AGTTCATATTTTTTTTGAAAGAATTAAATATAGAGggtgcctgtggctcaaaagggtagggcgccggtcccatatgccggaggtggcgggttcaaacccagccctggccaaa-aactgcaaaaaaaAAAAAAAAAAAAAAAAAGAATATAGATCACAGTCAGTGGAACAAGTGAATGAAGACATTGTGTGCAGAGTTTTTCTCTT--TTCTGAAGATTCCTGA-TAAGAAAAGGTGA--CCATGGGACTACGGATAGTACATACCTCAT------GTACCTCTTAGATTGTGGATTTTCCCAGTCTCTCTAAATCACAG---TATGGTGA------TTATTAAGGAAAG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25906910 298 +  26524999 ---TGCCTTTGGGTATGCCGC-------GTACTTCCCATCACACACTG------------------TGTCTTATGCTTTGTT--CCCCCCACAGAGCCCTGTATG-ATGCTAGACGGTATAGGTCAT-ATGCAAGGTATTC-AGCTCATAC--TTACTAGAA---CAAAATATGGG---------------------------------------------------------TCACAG-TGGTGGACACCATT-G---GA------------------------------AGACC---------------------------TGCTGTATG-------CCTCCCTTCATGGGGAGGA---TTCC----------------A--TGGAACTGTGCTAAGTACATACCTAAGATGTGAAGACTTCTGGGACCACAGATCTACTCAGGCTCC-----TGACCC---CTCAGTGACACTGATGGTCAAGGGGTA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             61710 274 -    302817 TCTCTTTCTTGGGTCCTGGGT-------ACACCTCA-----------GTAAACT-CAAGGGcagg-------------------------------------aca-gggtca----------gacac-aaacgaggtactc-gactaaaac--ttgttgaaggagtgaaATGTGGA---------------------------------------------------------TCACAGCCAGCAGGCGCCAAATGAATAA------------------------------CGACC---------------------------TGTAGTACACAGAGTCCCTCTTCCC-----GAGGATTCCACA-CA-------------C--AGAAGGTGTGAAAAGTACACACCCGGGATCTGAGTAC-TCTGGGATCTGAGATTTGCCCAGTCTCT-------CTAAACCTGAAGCTGCAGTGGTGGCGTGGGA---
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      977350 1018 -   3516910 I

a score=898556.000000
s hg38.chr6_GL000254v2_alt    172540 73 +   4827813 GGGAAGTTTCAAACTTTGCTCTGAGGCACAGTGATGGGATGACACAAGACTCCTAGACTTCCTCTAGCACTCA
s panTro5.chr6              29160041 73 + 175400573 GGGAAGTTTCAAACTTTGCTCTGAGGCACAGTGATGGGATGACACAAGACTCCTAGACTTCCTCTAGCACTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29394210 73 + 173848474 GGGAAGTTTCAAACTTTGCTCTGAGGCACAGTGATGGGATGACACAAGACTCCTAGACTTCCTCTAGCACTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5194715 73 +   6154872 GGGAAGTTTCAAACTTTGCTCTGAGGCACAGTGATGGGATGACACAAGACTCCTAGACTTCCTCTAGCACTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74193418 70 + 122973662 GGGGAGTTTCAAACTTTGCTCTGAGGCACAGTGATGGGATGACACAAGACTCCTAGACT---TCTAGCACTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29371214 73 + 172585720 GGGGAGTTTCAAACTTCGCCCTGAGGCACAGCGATGGGATGACACAAGACTCCTAGACTTCCTCTAACACTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29032099 73 - 170955103 GGGGAGTTTCAAACTTCGCCCTGAGGCACAGCGATGGGATGACACAAGACTCCTAGACTTCCTCTAACACTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2012168 73 -   2996164 GGGGAGTTTCAAACTTCGCCCTGAGGCACAGCGATGGGATGACACAAGACTCCTAGACTTCCTCTAACACTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1884700 73 -   2157725 GGGGAGTTTCAAACTTTGCCCTGAGGCACAGCGATGGGATGACACAAGACTCCTAGACTTCCTCTAACACTCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28328989 73 -  71996105 GGGGAGTTTCAAACTTTGCCCTGAGGCACAGCGATGGGATGACAGGAGACTCCTAGACTTCCTCTAACACTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2008456 73 +   2316924 GGGGAGTTTCAAACTTTGCCCTGAGGCACAGCGATGGGATGACACAAGACTCCTAGACTTCCTCTAACACTCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1893088 73 -   3067355 AGGGAGTTTCAAACTTTGCCCTGAGGCACAGCGATGGGATGACACAAGACTCCTAGACTTCCTTTAACACTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171414867 71 - 171630274 GGGCAGGTTCAAACTTT-CCCTGAGGCACAGTGATGGGATGACACAAGACTCCTAGACTCTCTCTAGCACTC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            242006 72 -    375362 GAGCAGTTTCACACTTTGCCCTGAGGCACAGTAATGGGATGACACAAGACTCCTAGACTCTCTCTAGCACTC-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      240903 72 -    373274 GGGCAGGTTCACACTGTGCCCTGAGGCACAGTGATGGGATGACACAAGACTCCTAGACTCTCTATAGCACTC-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      174090 70 -    285216 GGGCAGGTTCAAACTCCGCCCGGAGGCATAGTGATGGGAGGACACAAGACTCCTAGACTCTC--TAGCACTC-
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      978368 73 -   3516910 GGGGAGTTTCGAGCTTTGCCTTGAGGCATAGTGATGGGATGACATAAGACTCCTGGATTCTCTCTAGCACTCA
i proCoq1.NW_012147953v1   I 1018 I 77
s otoGar3.GL873742           1548387 72 -   2232465 GGGGAGTTTCATGCTTTGCCTTGAGCCATAGTGATGGGATGACAGAAGACTCCTAGATTCTCTATAGCACTC-
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25907208 68 +  26524999 -GGACAGCTCAGCTCCTGCCCC--AGCTCAGGGAGGGGCTGCCCCGAGGCTCT--GACCTACCCCCTCCCCCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             61984 67 -    302817 ----GGACCTGACCTTTGGCCCCAGCCTCAGTGATGGGATGACACAAGCCTCCCAGACT--CTCTAGCACCTG
i dasNov3.JH561790         C 0 C 0

a score=720185.000000
s hg38.chr6_GL000254v2_alt    172613 83 +   4827813 AG----AGCACTATTGT-----GGAGCTCAATCAGTCCTGCTTGTCACAAACCATGGTTTGACCCTGAAGCTGGGCGGGCAGAGCAGTGTAC
s panTro5.chr6              29160114 83 + 175400573 AG----AGCACTATTGT-----GGAGCTCAATCAGTCCTGCTTGTCACAAACCATGGTTTGACCCTGAAGCTGGGCGGGCAGAGCAGTGTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29394283 83 + 173848474 AG----AGCACTATTGT-----GGAGCTCAATCAGTCCTGCTTGTCACAAACCATGGTTTGACCCTGAAGCTGGGCGGGCAGAGCAGTGTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5194788 83 +   6154872 AG----AGCACTATTGT-----GGAGCTCAATCAGTCCTGCTTGTCACAAACCATGGTTTGACCCTGAAGCTGGGCGGGCAGAGCAGTGTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74193488 81 + 122973662 AG----AGTAATA--GT-----GGAGCTCAATCAGTCCTGCTTGTCACAAACCATGGTTTGACCCTGAAGCTGGGCAGGCAGAGCAGTGTAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29371287 81 + 172585720 AG----AGTAATA--GT-----GGAGCTCAATCAGTCTTGCTCGTCACAAACCATGGTTTAACTCTGAAGCTGGGCAGGCACAGCAGTGTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29032172 81 - 170955103 AG----AGTAATA--GT-----GGAGCTCAATCAGTCTTGCTCGTCACAAACCATGGTTTAACCCTGAAGCTGGGCAGGCACAGCAGTGTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2012241 81 -   2996164 AG----AGTAATA--GT-----GGAGCTCAATCAGTCTTGCTCGTCACAAACCATGGTTTAACCCTGAAGCTGGGCAGGCACAGCAGTGTAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1884773 81 -   2157725 AG----AGTAATA--GT-----GGAGCTCAATCAGTCTTGCTCGTCACAAACCATGGTTTGACCCTGAAGCTGGGCAGGCACAGCAGTGTAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28329062 81 -  71996105 AG----AGTAATA--GG-----GGAGCCCAATCAGTCTTGCTTGTCACAAACCATGGTTTATCCCTGCAGCTGGGCAGGCACAGCAGTGTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2008529 81 +   2316924 AG----AGTAATA--GT-----GGAGCTCAATCAGTCTTGCTCGTCACAAACCATGGTTTGACCCTGAAGCTGGGCAGGCACAGCAGTGTAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1893161 81 -   3067355 AG----AGTAATA--GT-----GGAGCTCAATCAGTCTTGCTTGTCACACACCATGGTTTGACCCTGAAGCTGGGCAGGCACAGCAGTGTAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171414938 82 - 171630274 AG----AGTATCA--GTGGAGCGGAGCTTAGTCAGTCCTGCTTGTCACACACTGTGGTT----CCTGAAGCTGGGCAGGCAGAGCGGTGCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            242078 75 -    375362 AG----ACT-------------GGAGCTCAGTCAGTCCTGCCTGTCACACACCATGGTTTGACCCCGAAGCTGGGCATGCAGAGCGGTGCAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      240975 79 -    373274 AGTAGTAGT-------------GGAGCTCAGTCAGTCCTGTTTGTCACACACCATGGTTTGACCCTGACGCTGGGCAGGCAGAGCGGTGCAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      174160 81 -    285216 AG----AGTAACA--GT-----GGAGCTCAGTCAGTCCTGCTTGTCACACACCGTGGTTCGACCCTGAAGCTGGGCGGGCAGCGCGGTGCAG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1548459 79 -   2232465 AG----AATAGGA--GG-----TGAACTCCATTACTCTTGCTTGTCACAAATCA--ATTAGCCCCTGAGGCTAAGCAGGCAGAGCAGTGTAC
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25907276 18 +  26524999 ------------------------AGCACAG--------------------------------------------------GAACGATGCCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             62051 70 -    302817 --------------AGC-----TGAGCTCGCCCACTCTTACCTCTCCCAAACCACAGGCTGCCCTCG--GCTGTGCAGG-AGAGCAGGGCGC
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      978441 77 -   3516910 I

a score=2190723.000000
s hg38.chr6_GL000254v2_alt    172696 220 +   4827813 TAGTGTACCAGCTCTGTTCTACTTTTGGGGAACTGCGGTTTCCACCCTATAATCCTTCTTTAACACCTGAGATTGATTTTAC----------CCTA--------------TGGCTTCAGCTCTGAGACATTTCAGGAGGCAAAGATACTGTTAACACATAGAAACAACTG--AGGATTTTTGTGGTTGTTGT-GTATCATCTTTATACATGTAACCAAAAGAATCCAAATCTAAGCAATTTCC-AAAT-
s panTro5.chr6              29160197 220 + 175400573 TAGTGTACCAGCTCTGTTCTACTTTTGGGGAACTGCGGTTTCCACCCTATAATCCTTCTTTAACACCTGAGATTGATTTTAC----------CCTA--------------TGGCTTCAGCTCTGAGACATTTCAGGAGGCAAAGATACTGTTAACACATAGAAACAACTG--AGGATTTTTGTGGTTGTTGT-GTATCATCTTTATACACGTAACCAAAAGAATCCAAATCTAAGCAATTTCC-AAAT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29394366 220 + 173848474 TAGTGTACCAGCTCTGTTCTACTTTTGGGGAACTGCGGTTTCCACCCTATAATCCTTCTTTAACACCTGAGATTGATTTTAC----------CCTA--------------TGGCTTCAGCTCTGAGACATTTCAGGAGGCAAAGATACTGTTAACACATAGAAACAACTG--AGGATTTTTGTGGTTGTTGT-GTATCATCTTTATACATGTAACCAAAAGAATCCAAATCTAAGCAATTTCC-AAAT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5194871 220 +   6154872 TAGTGTACCAGCTCTGTTCTACTTTTGGGGAACTGCGGTTTCCACCCTATAATCCTTCTTTAACACCTGAGATTGATTTTAC----------CCTA--------------TGGCTTCAGCTCTGAGGCATTTCAGGAGGCAAAGATACTATTAACACATAGAAACAACTG--AGGATTTTTGTGGTTGTTGT-GTATCATCTTTATACATGTAACCAAAAGAATCCAAATCTAAGCAATTTCC-AAAT-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74193569 218 + 122973662 TAGTGTACCAGCTCTGTTCTACTTTTGGGGAACTGTGGTTTCCACCCTATAATCCTGCTTTAATACCTGAGATTGATTTTAC----------CCTA--------------TGGCTTCAGCTCTGAG-CATTTCA-GAGGCAAAGATACTGTTAACGCATAGAAACAACTG--AGAATTTTTGTGGTAGTTGT-GTATCATCTTTATACATGTAACCTAAAGAATCCAAATCTAAGCAATTTCC-AAAT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29371368 220 + 172585720 TAGTGTACCAGCTCTGTTCTACTTTTGGGGAACTGCGGTTTCCACCCTATAATCCTTCTTTAACACCTGAGATTGATTTTAC----------CCTA--------------TGGCTTCAACTCTGAGGCATTTCAGGAGGCAAAGATACTGTTAACACATAGAAACAACTG--TGGATTTTTGTGGTGGTTGT-GTATCATCTTTATACATGTAACCTAAAAAATCCAAATCTAAGCAATCTCC-AAAT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29032253 220 - 170955103 TAGTGTACCAGCTCTGTTCTACTTTTGGGGAACTGCGGTTTCCACCCTATAATCCTTCTTTAACACCTGAGATTGATTTTAC----------CCTA--------------TGGCTTCAACTCTGAGGCATTTCAGGAGGCAAAGATACTGTTAACACATAGAAACAACTG--TGGATTTTTGTGGTTGTTGT-GTATCATCTTTATACATGTAACCTAAAGAATCCAAATCTAAGCAATCTCC-AAAT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2012322 220 -   2996164 TAGTGTACCAGCTCTGTTCTACTTTTGGGGAACTGCGGTTTCCACCCTATAATCCTTCTTTAACACCTGAGATTGATTTTAC----------CCTA--------------TGGCTTCAACTCTGAGGCATTTCAGGAGGCAAAGATACTGTTAACACATAGAAACAACTG--TGGATTTTTGTGGTTGTTGT-GTATCATCTTTATACATGTAACCTAAAGAATCCAAATCTAAGCAATCTCC-AAAT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1884854 220 -   2157725 TAGTGTACCAGCTCTGTTCTACTTTTGGGGAACTGCGGTTTCCACCCTATAATCCTTCTTTAACACCTGAGATTGATTTTAC----------CCTA--------------TGGCTTCAACTCTGAGGCATTTCAGGAGGCAAAGATACTGTTAACACATAGAAACAACTG--TGGATTTTTGTGGTTGTTGT-GTATCATCTTTATACATGTAACCTAAAGAATCCAAATCTAAGCAATCTCC-AAAT-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28329143 220 -  71996105 TAGTGTACCAGCTCTGTTCTACTTTTGGGGAACTGCAGTTTCCATCCTATAATCCTTCTTTAACACCTGAGATTGATTTTAC----------CCTA--------------TGGCTTCAACTCTGAGGCATTTCAAGAGGCAAAGATACTGTTAACACATAGAAACAACTG--TGGATTTTTGTGGTTGTTGT-GTATCATCTTTATACATGTAACCTGAAGAATCCACATCTAAGCAATCTCC-AAAT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2008610 220 +   2316924 TAGTGTACCAGCTCTGTTCTACTTTTGGGGAACTGCGGTTTCCACCCTATAATCCTTCTTTAACACCTGAGATTGATTTTAC----------CCTA--------------TGGCTTCAACTCTGAGGCATTTCAGGAGGCAAAGATACTGTTAACACATAGAAACAACTG--TGGATTTTTGTGGTTGTTGT-GTATCATCTTTATACATGTAACCTAAAGAATCCAAATCTAAGCAATCTCC-AAAT-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1893242 220 -   3067355 TAGTGTACCAGCTCTGTTCTACTTTTGGGGAACTGCGGTTTCCACCCTATAATCCTTCTTGAGCACCTGAGATTGACTTTAC----------CCTA--------------TAGCTTCAACTCTGAGGCATTTCAGGAGGCAAAGATACTGTTAACACATAGAAACAACTG--TGGATTTTTGTGGTTGTTGT-GTATCATCTTTATACATGTAACCTAAAGAATCCAAATCTAAACAATTTCC-AAAT-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171415020 193 - 171630274 TCTTGCACCAGCTCTGTTCTGCTTTTGGAGAACTGCAGTTTCCACCCTGTAATCCTTCTTTAACACCTGAGGTTGATTTTAC----------CCTA--------------TGGCTTCAGCTCTGA--------------CAAAGTTACTATAAACACATAGAAACAACTG--TGGATTTCTGTAG-------------ATCTTTATACATGTAACCTAAAAAATCCA-CTTTAAGCCATTTCC-AAAT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            242153 189 -    375362 TTGCGCACCAGCTCTGTTCTGCTTTTGGGGAACTGCAGTTTCCGCCCTGTAATCCTTCTTCAACACCTGAGGTTGATCTTAC----------CCTA--------------TGGCTTCAGCTCTGA--------------CAAAGT---TATAAACAC--AGAAACAACTG--CGGATTTCTGTGG-------------ATCTTTATACATGTAACCTAAAAAATCCA-ATTTAAGCCATTTCCAAAAT-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      241054 194 -    373274 CCGTGCACCAGCTCTGTTCTGCTTTTGGGGAACTGCAGTTTCCACCCTGTAATTCTTCTTTAACACCTGAGGTTGATCTTAC----------CCTA--------------TGGCTTCAGCTCTGA--------------CAAAGTTACTATAAATACATAGAAACAACTG--TGGATTTCTGTGG-------------ATCTTTATACACGTAACCTAAAAAATTCA-ATTTAAGCCATTTCCAAAAT-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      174241 194 -    285216 TTGTGCACCAGCTCTGTTCTGCTTCTGGGGAACTGCAGTGTCCACCCTGTAATCCTTCTTTAACACCTGAGGTTGATTTTAC----------CCTA--------------TGGCTTCAGCTCTGA--------------CAAAGTTACCATAAACACATAGAAACAACTG--TGGAATTCTGTGG-------------ATCTTTATACATGTAACCTAAAAAATCCA-ATTTAAGCCATTTCCAAAAT-
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25907294 213 +  26524999 ---TATAGCAG---TGCTCCTCTTTTGGGG-GCTGCAAT-------------TCCTACTCAAGCACCTCAGCTGGATTTTCTATTTCAGAGGTCCC--------------TGGCTTTGGCCTTGAGGTATTTTAGGAGGCAAAGATATTGCCAACACATGGAAACAATCAATAGTATTTTTGTGGTTGCTGT-TTATCACTTTTGCATACATAATCCAAAGAACCCCAATTTAGGCAATTTCCCAAAT-
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             62121 229 -    302817 --CCGGGCCAGCAGCACTCTGCTTTCTGGGAAAGGCAGTTTCCATTCTATAGCCCTTCAT-GGCCCCTGAGCCTGACTTCTC----------CCTATGTTGAAAGGCCCGTGGCTTCAGTTCTAACGCATTTCATGAGGCAAAGATACTGTAAACACTTAGAAACAACCG--GTTGCTTT----GTTGTTGTGGCAAGAATTTTACACGTGTAGCCCAAAGGATCAAAATTTAGGCAACTTCT-AAACT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      978441  77 -   3516910 I
e otoGar3.GL873742           1548538   0 -   2232465 C

a score=1661129.000000
s hg38.chr6_GL000254v2_alt    172916 114 +   4827813 CATTCATAATAGTAGTTAGGTTCACAAGGATTTTTACTCCTTACCCTAATATGGTTTTGTCTCTCATCACCTACCTGAGTATAACTGAGCCTCTCTTAATTCTGAAAGAATAAA
s panTro5.chr6              29160417 114 + 175400573 CATTCATAATAGTAGTTAGGTTCACAAGGATTTTTACTCCTTACCCTAATATGGTTTTCTCTCTCATCACCTACCTGAGTATAACTGAGCTTCTCTTAATTCTGAAAGAATAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29394586 114 + 173848474 CATTCATAATAGTAGTTAGGTTCACAAGGATTTTTACTCCTTACCCTAATATGGTTTTCTCTCTCATCACCTACCTGAGTATAACTGAGCTTCTCTTAATTCTGAAAGAATAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5195091 112 +   6154872 CATTCATAATAGTAGTTAGGTTCACAAGGATTTTTACTCCTTACCCTAATATGGTTTTGTCTCTCATCACCTACCTGAGTATAACTGAGCCTCTCTTAATTCTGAAAGAAT--A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74193787 113 + 122973662 CATTCATAATAGTAGTTAGGTTCACAAGGATTTTTACTCCTTACCCT-ATATGGTTTTGTCTCTCATCACCTACCTGAGTATAATTGAGCCTCTCTTAATTCTGAAAGAATAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29371588 114 + 172585720 CATTCATGATAGTAGTTAGGTTCACAAAGATTGTTACTCCTTAACCTAATGTGGTTTTGTCTCTCATCACCTACCTGAGTATAACTGAGCCTCTCTTAATTCTGAAAGAACAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29032473 114 - 170955103 CATTCATGATAGTAGTTACGTTCACAAAGATTGTTACTCCTTAACCTAATGTGGTTTTGTCTCTCATCACCTACCTGAGTATAACTGAGCCTCTCTTAATTCTGAAAGAACAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2012542 114 -   2996164 CATTCATGATAGTAGTTAGGTTCACAAAGATTGTTACTCCTTAACCTAATGTGGTTTTGTCTCTCATCACCTACCTGAGTATAACTGAGCCTCTCTTAATTCTGAAAGAACAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1885074 114 -   2157725 CATTCATAATAGTAGTTAGGTTCACAAAGATTGTTACTCCTTAACCTAATGTGGTTTTGTCTCTCATCACCTACCTGAGTATAACTGAGCCTCTCTTAATTCTGAAAGAACAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28329363 114 -  71996105 CATTCATAATAGTAGTTAGGTTCACAAAGATTGTTAGTCCTTAACCTAATGTGGTTTTGTCTCTCATCACCTACCTGAGTATAACTGAGCCTCTCTTAATTCTGAAAGAACAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2008830 114 +   2316924 CATTCATAATAGTAGTTAGGTTCACAAAGATTGTTACTCCTTAACCTAATGTGGTTTTGTCTCTCATCACCTACCTGAGTATAACTGAGCCTCTCTTAATTCTGAAAGAACAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1893462 114 -   3067355 CATTCATAATAGTAGTTAGGTTCACAAAGATTGTTACTCCTTAACCTAATATGGTTTTGTCTCTCATCACCTACCTGAGTATAACTGAGCCTCTCTTAATTCTGAAAGAACAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171415213 114 - 171630274 CATTCATAATGGCAGTTCGGTTCCCAAGGATTTTTACTCTTTGCCCTAATATGGTTTTGTCTCTCATCACCTACCTGAGTATAATTGAGCCTCTCTTAATTCTGAAAGAACAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            242342 114 -    375362 CATTCATACTGGCAGTTGGGTTCCCAAGGATTTTTACTCCTTACCCTAATATGGTTTTGTCTCTCATCACCTACCTGAGTATAATTGAGCCTCTCTTAATTCTGAAAGAACAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      241248 114 -    373274 CATTCATACTGGCAGTTAGGTTCCCGAGGACTTTTACTCCTTACCCTAATATGGTTTTGTCTCTCATCACCTACCTGAGTATAATTGAGCCTCTCTTAATTCTGAAAGAACAAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      174435 114 -    285216 CATTCGTAATGGCAGTTAGGTTCCCAAGGATTTTTACTCCTTACCCTAATTTGGTTTTGTCTCTCATCACCTACCTGAGTATAATTGAGCCTCTCTTAATTCTGAAAGAACAAA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      978518 114 -   3516910 CATTCACATTAGTAGTTAGGTTCACAAGGATTTTTACTCCTTACCCCAGTATGGTCTTGTCTCCCATCACCTACCTGAGTATAACTGAGCCTCTCTCAATTCTGAAAGAACAAA
i proCoq1.NW_012147953v1   I 77 I 22
s otoGar3.GL873742           1548538 114 -   2232465 CATTCATATCTATAGTTAGGTTTACAAGGATTTTTACTCCTTACCCTAGTATGGTTTTGTCTCCTATCACCTACCTGAATATAATTGAGCCTCTCTCAATTCTGAAAAAAAAAA
i otoGar3.GL873742         C 0 I 3
s canFam3.chr35             25907507 111 +  26524999 CATTCATAATGGTAGTTAGGTTTTC-AGGACCTTTATTCCTGTTTCC-ATATGGTTTTATCTC-CATCACCTACCTGAGTATAACTGAGCCTCTCTCAATTCTGAAAGAACAAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             62350 104 -    302817 TATTCGTAAGGGTAGACAGGTTCACAAGGATTTTTCATTCCT---------TGGTTCTATCTCCTGTCACCTACCTGAGTATAACTGAGCCTCTCTCAATTCTGAAAGAAAAG-
i dasNov3.JH561790         C 0 C 0

a score=216847.000000
s hg38.chr6_GL000254v2_alt    173030 19 +   4827813 AGAGCA---AAGTTATGGAAGT
s panTro5.chr6              29160531 19 + 175400573 AGAGAA---AAGTTATGGAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29394700 19 + 173848474 AGAGAA---AAGTTATGGAAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5195203 19 +   6154872 AGAGAA---AAGTTATGGAAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74193900 19 + 122973662 AGAGAA---AAATTATGGAAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29371702 19 + 172585720 AGAGAA---AAGTTATAGAAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29032587 19 - 170955103 AGAGAA---AAGTTATAGAAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2012656 19 -   2996164 AGAGAA---AAGTTATAGAAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1885188 19 -   2157725 AGAGAA---AAGTTATAGAAGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28329477 19 -  71996105 AGAGAA---AAGTTATAGAAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2008944 19 +   2316924 AGAGAA---AAGTTATAGAAGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1893576 19 -   3067355 AGAGAA---AAGTTATAGAAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171415327 19 - 171630274 CGAGAA---AAGTTACAGAAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            242456 19 -    375362 TGAGAA---AAGTTACAAAAGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      241362 19 -    373274 TGAGAA---AAGTTACAGAAGT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      174549 19 -    285216 CGAGAA---AAGTTACAGAAGT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1548655 22 -   2232465 AGAGAAAATAAATTTTGGAAGT
i otoGar3.GL873742         I 3 I 2
s canFam3.chr35             25907618 21 +  26524999 AGAGTA-GTAGTTAACAGACAC
i canFam3.chr35            C 0 I 2
s dasNov3.JH561790             62454 19 -    302817 AGAAAA---AAGTTACAGAAGT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      978632 22 -   3516910 I

a score=4933129.000000
s hg38.chr6_GL000254v2_alt    173049 413 +   4827813 --CATGAGGGTTTCCAGGAAATACATAACTAAGGGGGCTTTGGTT----------------------------------AGTCATCATAAAGCAGTGGTCTCCACCAGAAACCCCAGAACCTCTGTTGTTAGTCATGCACTAATTTTTTCATATGATGTATGGCTCTATCATCCAACCAAA------------------AGCTTTAAGGGGAGAGGGATTGGGAATCTTAAGTACAGGGATAACCACATGCCTGAGACTGGTAGAATATGGGATAAAACTGAGCCAAGATCAAGAATTCCACCTTCCAGTGAGTCAGCTGATTCTGCAGAGGGAAACGCGGTTCCAACCCCACG---------------------TCATACAT-AACTTTTGAGTTGCATAAGTCATCTGTG-TACAAGAGCTGAATGGCTC---AAGTGACACTCACTGACACTCTGGGGTAAACATGACCATTCATTTATAAGGCACTTTA
s panTro5.chr6              29160550 413 + 175400573 --CATGAGGGTTTCCAGGAAATACATAACTAAGGGGGCTTTGGTT----------------------------------AGTCATCATAAAGCAGTGGTCTCCACCAGAAACCCCAGAACCTCTGTTGTTAGTCATGCACTAATTTTTTCATATGATGTATGGCTCTATCATCCAACCAAA------------------AGCTTTAAGGGGAGAGGGATTGGGAATCTTAAGTACAGGGATAACCACATGCCTGAGACTGGTAGAATATGGGATAAAACTGAGCCAAGATCAAGAATTCTACCTTCCAGTGAGTCAGCTGATTCTGCAGAGGGAAACGCGGTTCCAACCCCACG---------------------TCATACAT-AACTTTTGAGTTGCATAAGTCATCTGTG-TACAAGAGCTGAATGGCTC---AAGTGACACTCACTGACACTCTGGGGTAAACATGACCATTCATTTATAAGGCACTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29394719 413 + 173848474 --CATGAGGGTTTCCAGGAAATACATAACTAAGGGGGCTTTGGTT----------------------------------AGTTATCATAAAGCAGTGGTCTCCACCAGAAACCCCAGAACCTCTGTTGTTAGTCATGCACTAATTTTTTCATATGATGTATGGCTCTATCATCCAACCAAA------------------AGCTTTAAGGGGAGAGGGATTGGGAATCTTAAGTACAGGGATAACCACATGCCTGAGACTGGTAGAATATGGGATAAAACTGAGCCAAGATCAAGAATTCTACCTTCCAGTGAGTCAGCTGATTCTGCAGAGGGAAACGCGGTTCCAACCCCACG---------------------TCATACAT-AACTTTTGAGTTGCATAAGTCATCTGTG-TACAAGAGCTGAATGGCTC---AAGTGACACTCACTGACACTCTGGGGTAAACATGACCATTCATTTATAAGGCACTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5195222 412 +   6154872 --CATGAGGGTTTCCAGGAAATACATAACTAA-GGGGCTTTGGTT----------------------------------AGTCATCATAAAGCAGTGGTCTCCACCAGAAACCCCAGAACCTCTGTTGTTAGTCATGCACTAATTTTTTCATATGATGTATGGCTCTATCATCCAACCAAA------------------AGCTTTAAGGGGAGAGGGATTGGGAATCTTAAGTACAGGGATAACCACATGCCTGAGGCTGGTAGAATATGGGATAAAACTGAGCCAAGATCAAGAATTCCACCTTCCAGTGAGTCAGCTGATTCTGCAGAGGGAAACGCGGTTCCAACCCCACG---------------------TCATATGT-AACTTTTGAGTTGCATAAGTCATCTGTG-TACAAGAGCTGAATGGCTC---AAGTGACACTCACTGACACTCTGGGGTAAACATGACCATTCATTTATAAGGCACTTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74193919 413 + 122973662 --CATGAGGGTTTCCAGGAAATACATAACTGAGGGGGCTTTGGCT----------------------------------AGTCATCATAAAGCAGTGGTCTCCACCAGAAACCCCAGAACCTCTGTTGTCAGTCATGCACTAATTTTTTCATATGATGTATGGCTCTATCATCCAACCAAA------------------AGCTTTAAGGGGAGAGGGATTGGGAATCTTAAGTACAGGGATAACCACATGCCTGAGACTGGTAGAATATGGGATCAAACTGAGCCAAGATCAAGAATTCCACCTTCCAGTGAGTCAGCTGATTTTGCAGAGGGAAACGCGGTTCCAACCCCACG---------------------TCATACAT-AACTTTTGAGTTTCGTAAGTCATCTGTG-TACGAGAGCTGAATGGCTC---AAGTGACACTCACTGACACTCTGGTGTAAACACGACCATTCATTTATAAGGCACTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29371721 413 + 172585720 --CATGAGGGTTTCCAGGAAATACATAACTGAGGGGGCTTTGGTT----------------------------------AGTCATCATAAAGCAGTGGTCTCCATTAGAAACCCCAGAACCTCTGCTGTCAGTCATGCACTAATTTTTTCATATGATGTATGGCTCTATCATCCAACCAAA------------------AGCTTTAAGGGGAGAGGGATTGGGAATCTTAAGTAGAGGGATAACCACATGCCTGAGACTGGTAGAATATGGGATCAAACTGAGCCAAGATCAAGAATTCCACCTTCTAGTGAGTCAGCTGGCTCTGCAGAGGGAAACGCAGTTCCAACCCCACG---------------------TCATACAT-AACTTTTGAGTTTCATAAGTCATCTGGG-TACGACAGCTGAATGGCTC---AAATGGCACTCACTGACACTCTGGGGTAAACATGACCATTCATTTATAAGGCACTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29032606 413 - 170955103 --CATGAGGGTTTCCAGGAAATACATAACTGAGGGGGCTTTGGTT----------------------------------AGTCATCATAAAGCAGTGGTCTCCATTAGAAACCCCAGAACCTCTGCTGTCAGTCATGCACTAATTTTTTCATATGATGTATGGCTCTATCATCCAACCAAA------------------AGCTTTAAGGGGAGAGGGATTGGGAATCTTAAGTAGAGGGATAACCACATGCCTGAGACTGGTAGAATATGGGATCAAACTGAGCCAAGATCAAGAATTCCACCTTCTAGTGAGTCAGCTGGCTCTGCAGAGGGAAACGCAGTTCCAACCCCACG---------------------TCATACAT-AACTTTTGAGTTTCATAAGTCATCTGGG-TACGACAGCTGAATGGCTC---AAATGGCACTCACTGACACTCTGGGGTAAACATGACCATTCATTTATAAGGCACTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2012675 413 -   2996164 --CATGAGGGTTTCCAGGAAATACATAACTGAGGGGGCTTTGGTT----------------------------------AGTCATCATAAAGCAGTGGTCTCCATTAGAAACCCCAGAACCTCTGCTGTCAGTCATGCACTAATTTTTTCATATGATGTATGGCTCTATCATCCAACCAAA------------------AGCTTTAAGGGGAGAGGGATTGGGAATCTTAAGTAGAGGGATAACCACATGCCTGAGACTGGTAGAATATGGGATCAAACTGAGCCAAGATCAAGAATTCCACCTTCTAGTGAGTCAGCTGGCTCTGCAGAGGGAAACGCAGTTCCAACCCCACG---------------------TCATACAT-AACTTTTGAGTTTCATAAGTCATCTGGG-TACGACAGCTGAATGGCTC---AAATGGCACTCACTGACACTCTGGGGTAAACATGACCATTCATTTATAAGGCACTTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1885207 413 -   2157725 --CATGAGGGTTTCCAGGAAATACATAACTGAGGGGGCTTTGGTT----------------------------------AGTCATCATAAAGCAGTGGTCTCCATTAGAAACCCCAGAACCTCTGCTGTCAGTCATGCACTAATTTTTTCATATGATATATGGCTCTATCATCCAACCAAA------------------AGCTTTAAGGGGAGAGGGATTGGGAATCTTCAGTAGAGGGATAACCACATGCCTGAGACTGGTAGAATATGGGATCAAACTGAGCCAAGATCAAGAATTCCACCTTCTAGTGAGTCAGCTGGCTCTGCAGAGGGAAACGCAGTTCCAACCCCACG---------------------TCATACAT-AACTTTTGAGTTTCATAAGTCATCTGGG-TACGACAGCTGAATGGCTC---AAATGGCACTCACTGACACTCTGGGGTAAACATGACCATTCATTTATAAGGCACTTTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28329496 413 -  71996105 --CATGAGGGTTTCCAGGAAATACATAACTGAGGGGGCTTTGGTT----------------------------------AGTCATCATAAAGCAGTGGTCTCCATTAGAAACCCCAGAACCTCTGCTGTCAGTCATGCACTAATTTTTTCATATGATGTATGGCTCTATCATCCAACCAAA------------------AGCTTTAAGGGGAGAGGGATTGGGAATCTTAAGTAGAGGGATAACCACATGCCTGAGACTGGTAGAATATGGGATCAAACTGAGCCAAGATCAAGAATTCCACCTTCTAGTGAGTCAGCTAGCTCTGCAGAGGGAAACGCAGTTCCAACCCCACG---------------------TCATACAT-AACTTTTGAGTTTCATAAGTCATCTGGG-TACGACAGCTGAATGGCTC---AAATGGCACTCACTGACACTCTGGGGTAAACATGACCATTCATTTATAAGGCACTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2008963 413 +   2316924 --CATGAGGGTTTCCAGGAAATACATAACTGAGGGGGCTTTGGTT----------------------------------AGTCATCATAAAGCAGTGGTCTCCATTAGAAACCCCAGAACCTCTGCTGTCAGTCATGCACTAATTTTTTCATATGATATATGGCTCTATCATCCAACCAAA------------------AGCTTTAAGGGGAGAGGGATTGGGAATCTTAAGTAGAGGGATAACCACATGCCTGAGACTGGTAGAATATGGGATCAAACTGAGCCAAGATCAAGAATTCCACCTTCTAGTGAGTCAGCTGGCTCTGCAGAGGGAAACGCAGTTCCAACCCCACG---------------------TCATACGT-AACTTTTGAGTTTCATAAGTCATCTGGG-TACGACAGCTGAATGGCTC---AAATGGCACTCACTGACACTCTGGGGTAAACATGACCATTCATTTATAAGGCACTTTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1893595 413 -   3067355 --CATGAGGGTTTCCAGGAAATACATAACTGAGGGGGCTCTGGTT----------------------------------AGTCATCATAAAGCAGTGGTCTCCATTAGAAACCCCAGAACCTCTGCTGTCAGTCATGCACTAATTTTTTCACATGATGTATGGCTCTATCATCCAACCAAA------------------AGCTTTAAGGGGAGAGGGATTGGGAATCTTAAGCAGAGAGATAACCACATGCCTGAGACTGGTAGAATATGGGATCAAACTGAGCCAAGATCAAGAATTCCACCTTCTAGTGAGTCAGCTGGCTCTGCAGAGGGAAACGCAGTTCCAACCCCACG---------------------TCATACGT-AACTTTTGAGTTTCATAAGTCATCTGTG-TATGACAGCTGAATGGCTC---AAATGGCACTCACTGACACTCTGGGGTAAACATGACCATTCATTTATAAGGCACTTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171415346 405 - 171630274 --CATGAGTGTTTCCAGGAAATACACAACTGAAGGAGCTCTGGTT----------------------------------AGTCATCATAAAGCAGCGGTCTCCACTAGAAACCCCAGAA-CTCTGCTGTCAGTCAGGCACTGATTTCTTCATATGGTCTGTGGCTCTACCATCCAACCAAA------------------AGCTTGAAGGGGAGAGAGACT--GAACCTCGGGTAGAGGGATAACCACATGCCTGAGACTGATAGAACATGAGACCAAACTGAGCCAAAATCAAGAATTCCACCCTCCAGTGAGTCAGCTGGCTTTGCAGAGGGAAACACAGCTGCAACCTCATA---------------------TCACACATTAACGTTT--GTTTCATAACTCAGCTGCG-TTTGAGAGCTGAACGGCTC---AAGTGA----CACTGACACTCCAGGGCAAACATGACCGTTCCTTTGTAGGGCACGTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            242475 379 -    375362 --GATGAGTGTTTCCAGGAAATACATAAATGAAGGAGCTCTGGTT----------------------------------AGTCATCATAAAGCAGTGGTCTCCTCTAGAAACCCCAGAA-CTCTGCTGTCAGTCAGGCACTGATTTTTCCGTATGCTCTATGGCTCTACCATCCAACCAAA------------------AGCTTGAAGGGGAGACAGACTGGGAACCTTGAGTAGAGGGAAAACCACAAGCCTGAGACTGGTGGAACATGAGATCAAACGGAGCCCAAACCAAGAGTGCTACGCCCTAGTGAGTCAGCCGGCCCTGCAGAGGAAAACGCAGTTCCAACCTCACA---------------------TCACACACGAA------------------------CG-TCTGAGAGCTGAATGGCTC---AAGTGA----CACTGACACTCCAGGGCAAACATGACCGTTCCTTTATAAGGC------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      241381 409 -    373274 --CATGAGCGTTTCCAGGAAATATGTAACTGAAGGAGCTCTGGTT----------------------------------AGTCATCATAAAGCAGCGGTCTCCACTAGAAACCCCAGGA-CTCTGCTGTCAGTCAGGCACTGATTTTTTCATATGGTGTATGGCTCTACCATCCAACCAAA------------------AGCTTGAAGGGGGGACAGACTGGGAACCTGGAGTAGAGGGATAACCACGTGCCTGAGACTGGTAGAACGTGAGATCAACCTGAGCCAAAATCAAGAATTCCACACTCCAGTGCGTCAGCTGGCTCTGCAGAGGGAAACGCGGTGCCAGCCTCACA---------------------TCACACATTAACGTTTGAGTTTCGTAAGTCATCTGTG-TTTGAGAGCTGAATGGCTC---AAGTGA----CACTGACACTCCAGGACAAACACGACCGTTCCTTTATAAGGCACTTTA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      174568 418 -    285216 --CACGAGTGTTTCCAGGAAATACATGACTGAAGGAGCTCTGGTT----------------------------------AGTCATCATAAAGCAGCGGTCTCCACTAGAAA-CCCAGAA-CTCTGCTGTCAGTCATGCACTGGTTTTTTCATATAGTGTATGGCTCTACCATCCAACCAAATGGCTCTACCATTCTCCCAGCTTGAAGGGGAGAGACACTGGGAACCTTGAGTAGAGGGATAACCACATGCCTGAGACTGGTAGAACATGGGATCAAA--GAGCCAAAATCAAGAATCCCACCCTCCAGTGAGTCAGCTGGCTCTGCAGAGGGAAACGCAGTCCCAACCTCACA---------------------TCACACATTAAC------GTTTCATAGGTCATCTGTG-TTTGAGAGCTGAATGGCTC---AAGTGA----CACTGACACTCCAGGGCAAACATGACCGTTCCTTTATAAGGCACTTTA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      978654 413 -   3516910 --CATGAGTATTTTGAGGAAAAACACAACTGAGGGAACTTTGATT----------------------------------AGACATCATAAAGCAATGGTCTTCACTAGAAACCCCAGAACCACCGTTGTCAGCCACACACTGATTTCTTCATATAATGTATGACTCTATGAACCAGCCAAG------------------AGCTTTGAGGGGAGAGAGACTGGGAATCTCGAGTAGA-GGATAACCACACATCTGAGACtggtagaacatggggtcaaactgagacaagatcaaggattccaccttccagcaagccagctcgctctgcagacggaattccggttccaagcccacg---------------------tcctacac-cactcttagctatcgtaagtcatctcTGTTGTAGGAGCTGGGTGGCTC---AAGGGACAACCACTGCCACTCTGGGGCAAACAAGACTATTcacttataaggcacttta
i proCoq1.NW_012147953v1   I 22 I 91
s otoGar3.GL873742           1548679 409 -   2232465 --CATGAGTATTTCCAGGAAATATATTATTGAGGAAACTTTGGTT----------------------------------AGTCATCATAAAGCAATGGTCTCCACTAGAAACCTCAGAACCACTGTTGCCAGCCACACACTGAT---TTCATACAATGTATGACTCTATCAACCAGCC-AG------------------AGCTTAGAGGGATGAGGGATTAGGAACCTTGAATAGACAGATAAGCCCATGACTGAGACTGGTGGAATATGGGGTCAAACTGAGCTAAGATCAAGGATTCCAGCCTCCAGCAAGCCTGTAGGCTCTGCAGAGGGAAACCCAGTTCCAAGCCCACA---------------------TCATATGC-CCCTCTTAGCTATCGTAAGTTATCTCTGTTTTAGGAGCTGCGTAGCTC---AAGTGACAACCATTGCCACTC-AGGGCAAATAAGACCATTCACTTATAAGGTACTTTA
i otoGar3.GL873742         I 2 C 0
s canFam3.chr35             25907641 401 +  26524999 --AGTGAGTATTTCC--GAGATACCTGA--GCAGAGACTCTCATTAAGAGTCTCCACaaaaaaaaaaaaaaaaaaaaaGAGTCTCCACAAAGCTACAGT-TTCATCAG----CCCTGCATTCCTGTTGTCAGCTGTATACTGATTTCTTGACCCAA----------CATCGTTCAACCAAG------------------AGCTCTACAGGAAGAGGGACAGGGAATTT------------------------------TGGTAGCAAATGGGATCAAACTGAACCAAGGTCAGGGAATCCACCCTCCAGT----------------------GAAATGCTCTTCCAATCCACCTCATTTTGGGTTGCTGTTTTTCTCATGCAC-AACTCTTGGCCTTCAGAAGCCACCTGTGTTCTAAGGGCTGGGTGGCTCCGTGGGCGATACCCACCACCACGCCAGGGCAAATGCCAGCACTGACACAAGAAGTACTGAG
i canFam3.chr35            I 2 C 0
s dasNov3.JH561790             62473 317 -    302817 CATATGAGTATCTCCCAGGAATACGCACGTGAGGGAGCTTTGGGT--------------------------------AGAGTCGTCATAAAGCAGGGGTGTCCGTCAGAGGCCCCAGAAC--CTGCT----GCCCTGCGCGGGTTTCCTCAGACAGGGCAGAATTCCGCCATCCAGCTAAG----------------------------TGAGGGCGAAAGGGAACGTGGGGTGGCAGGATCCCCACATGCCTGAGATTGGCAGAAAATGGGGCCG--CTGAGTCAGCACCAAGGGTTTTAGCCCCCAG-GGGCCGGCTGGCTCTGCGGGGGGGAGCCC------------------------------------CCAGCCAC---------------------------TG-----------------------A---------------------GGGGCCAGCAAGACCAGTCGTTTACAAGGCACTTGG
i dasNov3.JH561790         C 0 C 0

a score=964693.000000
s hg38.chr6_GL000254v2_alt    173462 100 +   4827813 --TAGTTGAAACAGAATTTTTCAC--ACATTATCCCAC-TAAGACTTTTAAGTGGCAAGAAAAGAAGA-------------GCCA------------GA-------TCAAGGAAAGTCATGCCTGAACTAACCACTT
s panTro5.chr6              29160963 100 + 175400573 --TAGTTGAAACAGAATTTTTCAC--ACATTATCCCAC-TAAGACTTTTAAGTGGCAAGAAAAGAAGA-------------GCCA------------GA-------TCAAGGAAAGTCATGCCTGAACTAACCACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29395132 100 + 173848474 --TAGTTGAAACAGAATTTTTCAC--ACATTATCCCAC-TAAGACTTTTAAGTGGCAAGAAAAGAAGA-------------GCCA------------GA-------TCAAGGAAAGTCATGCCTGAACTAACCACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5195634 100 +   6154872 --GAGTTGAAACAGAATTTTTCAC--ACATTATCCCAC-TAAGACTTTTAAGTGGCAAGAAAAGAAGA-------------GCCA------------GA-------TCAAGGAAAGTCATGCCTGAACTAACCACTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74194332 100 + 122973662 --TGGTTGAAACAGAATTTTTCAC--ACATTATCCCAT-TAAGCCTTTTAAGTGGCAAGAAAAGAAGA-------------GCCA------------GA-------TCAAGGAAAGTCATGCCTGAACTAACCACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29372134  96 + 172585720 --GAGTTGAAACAGAATTTTTCAC--ACATTATCCCAC-TAAGCCTTTTAAGTGGCAAGAAAAGAAGA-------------GCCA------------GA-------TCAAG----GTCGTGCCTGAACTAACCACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29033019  96 - 170955103 --GAGTTGAAACAGAATTTTTCAC--ACATTATCCCAC-TAAGCCTTTTAAGTGGCAAGAAAAGAAGA-------------GCCA------------GA-------TCAAG----GTCGTGCCTGAACTAACCACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2013088  96 -   2996164 --GAGTTGAAACAGAATTTTTCAC--ACATTATCCCAC-TAAGCCTTTTAAGTGGCAAGAAAAGAAGA-------------GCCA------------GA-------TCAAG----GTCGTGCCTGAACTAACCACTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1885620  96 -   2157725 --GAGTTGAAACAGAATTTTTCAC--ACATTATCCCAC-TAAGCCTTTTAAGTGGCAAGAAAAGAAGA-------------GCCA------------GA-------TCAAA----GTCGTGCCTGAACTAACCACTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28329909  96 -  71996105 --TAGTTGAAACAGAATTTTTCAC--ACATTATCCCAC-TAAGCCTTTTAAGTGGCAAGAAAAGAAGA-------------GCCA------------GA-------TCAAG----GTCGTGCCTGAACTAACCACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2009376  96 +   2316924 --GAGTTGAAACAGAATTTTTCAC--ACATTATCCCAC-TAAGCCTTTTAAGTGGCAAGAAAAGAAGA-------------GCCA------------GA-------TCAAA----GTCGTGCCTGAACTAACCACTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1894008  96 -   3067355 --TAGCTGAAACAGAATTTTTCAC--ACATTATCCCAC-TAAGCCTTTTAAGTGGCAAGAAAAGAAGA-------------GCCA------------GA-------TCAAG----ATCGTGCCTGAACTAACCACTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171415751  98 - 171630274 --TAGGTGAAGCAGAACTTTTCAG--ACGTTATCCCAC-TAAGCCTTTTAAGTGGCTAGAAAAGAAGG---------------AA------------GA-------TCGAGGAAAGTCACACCTGAACTAACCACGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            242854  84 -    375362 -------GAAGCAG-----------------ATCCCAC-TAAGCCTTTTACGTGGCAAGAAAAGAAGACAGA---------CCCA------------GA-------TCAAGGAATGTCATGCCTGAACTAACCACGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      241790  99 -    373274 --TAGGTGAAGCAGAACTTTTCAA--ACATTATCCCAC-AAAGCCTTTTAAGTGGCAACAAAAGAAGA-------------GCCA------------GA-------TCAAGGAAAGTCATGCCTG-ACTAACCACGT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      174986 104 -    285216 --TAGGTGAAGCAGAATTTTTCAA--ACGTTATCCCAC-TAATCCTTTTAAGTGGCAAGAAAAGAAGTAAGA---------GCCA------------GA-------TCAAGGAAAGTCATGCCTGAACTAACCACGT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1549088  90 -   2232465 ---AAGTGACAAAGCA-TATTCAT--ATATGATCTCAT-TAAG-------AGCAG-AAGTAAATGAGA-------------GCAA------------AT-------CAAAGAAAAGTCATACCTGAACTAATCACTT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25908042 120 +  26524999 --CAGTGGACAAAGCA-TGTTCAC--AAATAAGCCCTCATGAGGCTTTCAGGTGGGGGGGAGAGTAGGAAAAATTAAGGAGGCCA------------GATTCAAATTCAAGGGAATTCACACTTGAACTGACCACTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             62790 111 -    302817 CAGGGACGAAGCA----TTTCCACAGACACGCCCTCGG-TAAGCCTTTCAGGTGGCAGGAGAAGAGGA-------------GAAGTAAATGAGAGGTGA-------GCAAG-CAAGTCCTGCCTGAACTAACCACTT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      979067  91 -   3516910 I

a score=2480523.000000
s hg38.chr6_GL000254v2_alt    173562 216 +   4827813 CTGG-TATTATCCACTGTATTGAGTGGAGTTTCTCCCCATTTGTCTTGCTTGTAGAGGACAT----G----TATCTGCTAGCTCTATGTTGCTAGATGCCCC--AAAAAGTATATATCTGAATAGATGCAATGCATATATGAACCCAGCATATACAAAA-------------------TAGA-AAATTATCAAAGATTGTGGGGGTTTGTAATTTCTAATAATTAAGAGAAGGGTTTACCTACATAT
s panTro5.chr6              29161063 216 + 175400573 CTGG-TATTATCCACTGTATTGAGTGGAGTTTCTCCCCATTTGTCTTGCTTGTAGAGGACAT----G----TATCTGCTAGCTCTATGTTGCTAGATGCCCC--AAAAAGTATATATCTGAATAGATGCAATGCATATAAGAACCCAGCATATACAAAA-------------------TAGA-AAATTATCAAAGATTGTGGGGGTTTGTAATTTCTAATAATTAAGAGAAGGGTTTAGCTACATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29395232 216 + 173848474 CTGG-TATTATCCACTGTATTGAGTGGAGTTTCTCCCCATTTGTCTTGCTTGTAGAGGACAT----G----TATCTGCTAGCTCTATGTTGCTAGATGCCCC--AAAAAGTATATATCTGAATAGATGCAATGCATATAAGAACCCAGCATATACAAAC-------------------TAGA-AAATTATCAAAGATTGTGGGGGTTTGTAATTTCTAATAATTAAGAGAAGGGTTTAGCTACATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5195734 215 +   6154872 CTGG-TATTACCCACTGTATTGAGTGGAGTTTCTCCCCATTTGTCTTGCTTGTAGAGGACAT----G----TACCTGCTAGCTCTATGTTGCTAGATGCCCC--AAAAAGTATATATCTGAATAGATGCAATGCATATAGGAACCCAGCATATACAAAA-------------------TAGA-AAATTATCAAAGATTGTGGGGG-TTGTAATTTCTAATAATTAAGAGAAGGGTTTACCTACATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74194432 216 + 122973662 CTGG-TATTACCCACTGTATTGAGTGGAGTTTCTCCCCATTTGTCTTGCTTGTAGAGGACAT----G----TATCTACTAGCTCTATGTTGCTAGATGCCCC--GAAAAGTATGTATCTGAATAGACGCAATGCAAATAAGAACCCAGCATATATAAAA-------------------CAGA-AAATTATCAAAGATTGTGGGGGTTTGTAATTTCTAATAATTAAGAGAAGGGTTTACCTACATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29372230 208 + 172585720 CTGGTTATTACCCACTGTATTAAGTGGAGTTTCTCCCCAT---------TTGTAGAGGACAT----G----TATCTGCTAACTCTATGTTGCTAGATGCCCC--AAAAAGGATATATCTGAGTAGATGCAATGCAAATAAGAACTCAGCATATATAAAA-------------------TAGA-AAAAAATCAAAGATTATGGGTGTTTGTAATTTCTAATAATTAAGAGAAGGGTTTACCTACATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29033115 208 - 170955103 CTGGTTATTACCCACTGTATTAAGTGGAGTTTCTCCCCAT---------TTGTAGAGGACAT----G----TATCTGCTAACTCTATGTTGCTAGATGCCCC--AAAAAGTATATATCTGAGTAGATGCAATGCAAATAAGAACTCAGCATATATAAAA-------------------TAGA-AAAAAATCAAAGATTATGGGTGTTTGTAATTTCTAATAATTAAGAGAAGGGTTTACCTACATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2013184 208 -   2996164 CTGGTTATTACCCACTGTATTAAGTGGAGTTCCTCCCCAT---------TTGTAGAGGACAT----G----TATCTGCTAACTCTATGTTGCTAGATGCCCC--AAAAAGTATATATCTGAGTAGATGCAATGCAAATAAGAACTCAGCATATATAAAA-------------------TAGA-AAAAAATCAAAGATTATGGGTGTTTGTAATTTCTAATAATTAAGAGAAGGGTTTACCTACATAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1885716 208 -   2157725 CTGGTTATTACCCACTGTATTAAGTGGAGTTTCTCCCCAT---------TTGCAGAGGACAT----G----TATCTGCTAACTCTATGTTGCCAGATGCCCC--AAAAAGTATATATCTGAGTAGATGCAATGCAAATAAGAACTCAGCATATATAAAA-------------------TAGA-AAAAAATCAAAGATTATGGGTGTTTGTAATTTCTAATAATTAAGAGAAGGGTTTACCTACATAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28330005 208 -  71996105 CTGGTTATTACCCACTGTATTAAGTGGAGTTTCTCCCCAT---------TTGTAGAGGACAT----G----TATCTGCTAACTCTATGTTGCTAGATGCCCC--AAAAAGTATATATCTGAGTAGATGCAATGCAAATAAGAACTCAGCATATATAAAA-------------------TAGA-AAATAATAAAAAATTATGGGTGTTTGTAATTTCTAATAATTAAGAGAAGGGTTTACCTACATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2009472 208 +   2316924 CTGGTTATTACCCACTGTATTAAGTGGAGTTTCTCCCCAT---------TTGCAGAGGACAT----G----TATCTGCTAACTCTATGTTGCTAGATGACCC--AAAAAGTATATATCTGAGTAGATGCAATGCAAATAAGAACTCAGCATATATAAAA-------------------TAGA-AAAAAATCAAAGATTATGGGTGTTTGTAATTTCTAATAATTAAGAGAAGGGTTTACCTACATAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1894104 207 -   3067355 CTGGTTATTACCCACTGTATTAAGTGGAATTTCTCCCCAT---------TTATAGAGGACAT----G----TATCTGCTAACTCTACGTTGCTAGATGCCCC--AAAAAGTATATATCTGAGTAGATG-AATGCAAATAAGAACTCAGCATATATAAAA-------------------TAGA-AAATAATCAAAGATTGTGGGTGTTTGTAATTTCTAATAATTAAGAGAAGGGTTTACCTACATAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171415849 209 - 171630274 CTGG-TATTATCCACTGTATCAAGCGCAGTTTCTCCCCATTTGTCTTGCTTGTAGAGGACGT----G----TATCTGCTACATC--TGTTACCAGATGCCTC---AAAAG----TATCTGAGCAGGTGCAATGCAAGTAAGAGCTCAGCATATACATTA-------------------CAGA-AAATTATTAAACATTATGGAAGTTTGTTATTTGTAATAATTAAGAAAAGCGTTTACCTACATAT
i calJac3.chr4             C 0 I 299
s saiBol1.JH378348            242938 215 -    375362 CTGG-TATTATCCGCTGTACCAACTGCAGTTTCTCCCCATTTGTCTTGCTTGCAGAGGACAT----G----TATCTGCTAAATCTATGTTACCAGATGCCCC---CAGAGTATCTATCTGAGCAGGTGCAATGCAAATTAGAGCTCAGCATATACATTA-------------------CAGA-AAATTATCAAAGATTATGGGGGCTTGTAATTTGGAATAATTAAGAAAAGGGTTTACCTACATTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      241889 215 -    373274 CTGG-TATTATCCACTGTAGCAAGTGAAGTTTCTCCCCATTTGTCTTGCTTGTAGAGGACAT----G----TATCTGCTAAATCTACGTTACTAAATGCCCC---AAAAGTATATATCTGAGCAGGTGCAATGCAAATTAGAGCTCAGCATATATATTA-------------------CGGA-AAATTATCAAAGATTATGGGGGTTTGTAATTTGTGATAATTAAGAAAAGGGTTTACCTACATAT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      175090 214 -    285216 CTGG-TATTACCTACTGTATCAAGTGCAGTTTCTCCCCATTTGTCTTGCTTGTAGAGGACAT----G----TATCTGCTAAATCTATGTTACTAGATGCCCC---AAAAGTATATATCTCAACAGGTGCAATGCAAATAAGAGCTCAGCATATATATTA-------------------CAGA-AAATTATCAAAGATCGTGG-GGTTTGTAATTTGTAATAATTAAGAAAAGGGTTTACCTACATAT
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      979158 215 -   3516910 CTGG-TATTATCCACCATATTGAGTGCAGTTTCTCCCTATTTGTCTTGCTTGTGGAGGACAT----GTGAATGTTCCCTAAATCTATGTTGCTAGATGCCAA---AAAAGTACATTTCTGAGAAGATGCAATACAAAGAAGGATTCAGCATATGTAATA-------------------TAGA-AAATTATCAAAGATCATGGGGG----TCATTTGTAATAAATAATGAAAGGATTTACCTACATTT
i proCoq1.NW_012147953v1   I 91 C 0
s otoGar3.GL873742           1549178 206 -   2232465 TTGG-TATTATACACTATATTGAGTGGAGTTTCTCACTATTTGTCTTGCTTGTCCTCCACAA----G-GAAAGTTCCCT-ACTCTATGTTGCTAACTCCC-------AAGTACACATCTGAAAAGATGCAATACAAATAAGGATTTAACATATACAATA-------------------TGGG-AAATAATCAAA---TGTGAGGG----TAATTTGTAATAAATAATAAAAAGGTTTACTTGTATCT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25908162 217 +  26524999 CCGG-TATTACCCACTGTATTTAGGGCAGTTTCTCCCTATTTTGTTTGCCTGTGGAAGGCATTGGAG----TGTCCCCTA--CGTATGTTGCTAGAGGCCAA---AAAAGTATGTATCTGGAAAGATAAACTGCAAAGAAGGTCTTAGTCTATACAACA-------------------TACAGGAAACAGCAGAGATTATGGGGATTTGTCATTTGTAACAAAGAAGAG-GGGGTTTGCCTACATGT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             62901 240 -    302817 CTAA-TGCTGTCCACGGTATTAAGTGGGATTTTTCCCCGTTTGTCTTGTTTGTGGAGGATGT----GGGTACATCACCTAAATCTACATTGCTAGATGCCCCCCAAAACGTGTGTATCTGAGGAGAGGCAGTGCGATTAAGGATTTCCTATACGTGATACGGTACAGGTAATAGATCCCGGA-AGAGCATCAGTGAGTACAGGGAATT-TAATTTATAAAACATAAGAAAAGGGCTTATCTACGTGT
i dasNov3.JH561790         C 0 C 0

a score=182266.000000
s hg38.chr6_GL000254v2_alt    173778 12 +   4827813 AAGGATTTCAGA
s panTro5.chr6              29161279 12 + 175400573 AAGGATTTCAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29395448 12 + 173848474 AAGGATTTCAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5195949 12 +   6154872 AAGGATTTCAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74194648 12 + 122973662 AAGGATTTCAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29372438 12 + 172585720 AAGGATTTCAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29033323 12 - 170955103 AAGGATTTCAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2013392 12 -   2996164 AAGGATTTCAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1885924 12 -   2157725 AAGGATTTCAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28330213 12 -  71996105 AAGGGTTTCAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2009680 12 +   2316924 AAGGATTTCAGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1894311 12 -   3067355 AAGGATTTCAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171416357 12 - 171630274 aaGGATTTCAGA
i calJac3.chr4             I 299 C 0
s saiBol1.JH378348            243153 12 -    375362 AAGGATTTCAGA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      242104 12 -    373274 AAGGATTTCAGA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      175304 12 -    285216 AAGGATTTCAGA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      979373 12 -   3516910 AAGGATTTCAGA
i proCoq1.NW_012147953v1   C 0 I 6827
s otoGar3.GL873742           1549384 12 -   2232465 AAGGATTTCAGA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25908379 12 +  26524999 GAAGGTTTCAGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             63141  9 -    302817 AAGGGATCC---
i dasNov3.JH561790         C 0 C 0

a score=366690.000000
s hg38.chr6_GL000254v2_alt    173790 31 +   4827813 ATCCACCAGACTGCCCAGGAATTTTAGTATT
s panTro5.chr6              29161291 31 + 175400573 ATCCACCAGACTGCCCAGGAATTTTAGTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29395460 31 + 173848474 ATCCACCAGACTGCCCAGGAATTTTAGTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5195961 31 +   6154872 ATCCACCAGACTGCCCAGGAATTTTAGTATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74194660 31 + 122973662 GCCCGGCAGGCTGCCCAGGAATTTTAGTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29372450 31 + 172585720 ATCCACCAGACTGCCCAGGAATTTAAGTATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29033335 31 - 170955103 ATCCACCAGACTGCCCAGGAATTTAAGTATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2013404 31 -   2996164 ATCCACCAGACTGCCCAGGAATTTAAGTATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1885936 31 -   2157725 ATCCACCAGACTGCCCAGGAATTTAAGTATT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28330225 31 -  71996105 ATCCACCAGACTGCCCAGGAACTGAAGTATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2009692 31 +   2316924 ATCCACCAGACTGCCCAGGAATTTAAGTATT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1894323 31 -   3067355 ATCCACCAGACTGCCCAGGAATTTAAGTATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171416369 31 - 171630274 ATCCACCAGACTGCCCAGGAATTTTAGAATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            243165 31 -    375362 ATCCACCAGACTGCCCAGGAATTTTAGAATT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      242116 31 -    373274 ATCCACCAGACTGCCCACGAATTTTAGAATT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      175316 31 -    285216 ATCCACCAGACTGCCCAGGAATTTTAGAATT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1549396 24 -   2232465 ------CTGCCTGCCTAGGAACTT-AGTATT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25908391 31 +  26524999 TTCCATTGGACTGTCTAGGAATTTCAGCACT
i canFam3.chr35            C 0 I 7536
s dasNov3.JH561790             63150 21 -    302817 ----------CAGCCTAGGAACTTCAGCATT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      979385 6827 -   3516910 I

a score=15300.000000
s hg38.chr6_GL000254v2_alt    173821 1 +   4827813 C
s panTro5.chr6              29161322 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29395491 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5195992 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74194691 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29372481 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29033366 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2013435 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1885967 1 -   2157725 C
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28330256 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2009723 1 +   2316924 C
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1894354 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171416400 1 - 171630274 C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            243196 1 -    375362 C
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      242147 1 -    373274 C
i cebCap1.NW_016108108v1   C 0 I 10717
s aotNan1.NW_018494050v1      175347 1 -    285216 C
i aotNan1.NW_018494050v1   C 0 I 10915
s otoGar3.GL873742           1549420 1 -   2232465 C
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             63171 1 -    302817 C
i dasNov3.JH561790         C 0 I 9159
e proCoq1.NW_012147953v1      979385 6827 -   3516910 I
e canFam3.chr35             25908422 7536 +  26524999 I

a score=157780.000000
s hg38.chr6_GL000254v2_alt    173822 22 +   4827813 CTGGGTGGAATAATATATGGCC
s panTro5.chr6              29161323 22 + 175400573 CTGGGTGGAATAATATATGGCC
i panTro5.chr6             C 0 I 7336
s panPan2.chr6              29395492 22 + 173848474 CTGGGTGGAATAATATATGGCC
i panPan2.chr6             C 0 I 7198
s gorGor5.CYUI01015250v1     5195993 22 +   6154872 CTGGGTGGAATAATATATGGCC
i gorGor5.CYUI01015250v1   C 0 I 7310
s nomLeu3.chr1a             74194692 22 + 122973662 CTGGGTGGAATAATATATGGCC
i nomLeu3.chr1a            C 0 I 8508
s rheMac8.chr4              29372482 22 + 172585720 CTGGGTGGAATAATATATGGCC
i rheMac8.chr4             C 0 I 8386
s macFas5.chr4              29033367 22 - 170955103 CTGGGTGGAATAATATATGGCC
i macFas5.chr4             C 0 I 7900
s macNem1.NW_012011356v1     2013436 22 -   2996164 CTGGGTGGAATAATATATGGCC
i macNem1.NW_012011356v1   C 0 I 19044
s cerAty1.NW_012001495v1     1885968 22 -   2157725 CTGGGTGGAATAATATATGGCC
i cerAty1.NW_012001495v1   C 0 I 8096
s chlSab2.chr17             28330257 22 -  71996105 CCAGGTAGAATAATATATGGCC
i chlSab2.chr17            C 0 I 8048
s manLeu1.NW_012104165v1     2009724 22 +   2316924 CTGGGTGGAATAATATATGGCC
i manLeu1.NW_012104165v1   C 0 I 15003
s colAng1.NW_012115566v1     1894355 22 -   3067355 CCGGGTGGAATAATATATGGCC
i colAng1.NW_012115566v1   C 0 I 9928
s calJac3.chr4             171416401 11 - 171630274 -----------AATATATGGCC
i calJac3.chr4             C 0 I 11567
s saiBol1.JH378348            243197 11 -    375362 -----------AATATATGGCC
i saiBol1.JH378348         C 0 I 11181
s otoGar3.GL873742           1549421 11 -   2232465 -----------AATATGTAGCC
i otoGar3.GL873742         C 0 I 9460
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      979385 6827 -   3516910 I
e canFam3.chr35             25908422 7536 +  26524999 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      242148 10717 -    373274 I

a score=0.000000
s hg38.chr6_GL000254v2_alt    173844 7328 +   4827813 [encoded data, 7328 characters]
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      979385 6827 -   3516910 I
e canFam3.chr35             25908422 7536 +  26524999 I
e saiBol1.JH378348            243208 11181 -    375362 I
e otoGar3.GL873742           1549432 9460 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      242148 10717 -    373274 I
e calJac3.chr4             171416412 11567 - 171630274 I
e colAng1.NW_012115566v1     1894377 9928 -   3067355 I
e manLeu1.NW_012104165v1     2009746 15003 +   2316924 I
e chlSab2.chr17             28330279 8048 -  71996105 I
e cerAty1.NW_012001495v1     1885990 8096 -   2157725 I
e macNem1.NW_012011356v1     2013458 19044 -   2996164 I
e macFas5.chr4              29033389 7900 - 170955103 I
e rheMac8.chr4              29372504 8386 + 172585720 I
e nomLeu3.chr1a             74194714 8508 + 122973662 I
e gorGor5.CYUI01015250v1     5196015 7310 +   6154872 I
e panPan2.chr6              29395514 7198 + 173848474 I
e panTro5.chr6              29161345 7336 + 175400573 I

a score=388011.000000
s hg38.chr6_GL000254v2_alt    181172 463 +   4827813 ggccaacatggtgaaaccccatctct-accaaaaat-acaaaaattagctaggtgtggtggtgtgtgcctgtaatcccagctactcgggaggctgaggcaggagactcactcaggaggtggaagctgcagtgagctgagattgtgccactgcactccagcctgggcaacagagtgagactttgtctaaaaaaaatttaaaaaaaGGTTTTAAAGCCTTAATTATGgtgcttgcttcagcagcagatatcctcaaatgggaaccatgcac---agattagcatggctcctgc-acaaggataacacacaaatttgtgaaccattttctacttttTGTGTTCaatgttcacagcagcactattgacaatagccaaaaggtgcaaacaaccaaaatgcccatcgactgatgaataaacaaaacatattatatatccatacaatggaatgttattcagccataaagagaaata
s panTro5.chr6              29168681 463 + 175400573 ggccaacatggtgaaaccccatctct-accaaaaat-acaaaaattagctaggtgtggtggtgtgtgcctgtaatcccagctactcgggaggctgaggcaggagactcactcaggaggtggaagctgcagtgagctgagattgtgccactgcactccagcctgggcaacagagtgagactttgtctaaaaaaaaTTTTTAAAAAGGTTTTAAAGCCTTAATTATGgtgcttgcttcagcagcagatatcctcaaatgggaaccatgcac---agattagcatggctcctgc-acaaggataacacacaaatttgtgaaccattttctacttttTGTGTTCaatgttcacagcagcactattgacaatagccaaaaggtgcaaacaaccaaaatgcccatcgactgatgaataaacaaaacatattatatatccatacaatggaatgttattcagccataaagagaaata
i panTro5.chr6             I 7336 C 0
s panPan2.chr6              29402712 463 + 173848474 ggccaacatggtgaaaccccatctctaaccaaaaataacaaaaattagctaggtgtggtggtgtgtgcctgtaatcccagctactcgggaggctgaggcaggagactcactcaggaggtggaagctgcagtgagctgagattgtgccactgcactccagcctgggcaacagagtgagactttgtctaaaaaaa--TTTTAAAAAGGTTTTAAAGCCTTAATTATGgtgcttgcttcagcagcagatatcctcaaataggaaccatgcac---agattagcatggctcctgc-acaaggataacacacaaatttgtgaaccattttctacttttTGTGTTCaatgttcacagcagcactattgacaatagccaaaaggtgcaaacaaccaaaatgcccatcgactgatgaataaacaaaacatattatatatccatacaatggaatgttattcagccataaagagaaata
i panPan2.chr6             I 7198 C 0
s gorGor5.CYUI01015250v1     5203325 458 +   6154872 ggccaacatggtgaaaccccatctct-atcaaaaat-acaaaaattagctaggtgtggtggtgtgtgcctgtaatcccagctactcgggaggctgaggcaggagactcactcaggaggtggaagctgcagtgagctgagattgtgccactgcactccagcctgggcaacagagtgagactttgtctcaaaaaaa-taaaaaaaaGGTTTTAAAGCCTTAATTATGgtgcttgcttcagcagcagatatcctcaaatgggaaccatgcac---agattagcatggctcctgcaacaaggataacacacaaatttgtgaaccactttctacttttTGTGTTCaatgttcaaagcagcactattgacaatagccaaaaggtgcaaacaaccaaaatgtccatcgactgatgaataaacaaaac-----atatatccatacaatggaatgttattcagccataaagagaaata
i gorGor5.CYUI01015250v1   I 7310 C 0
s macFas5.chr4              29041289 458 - 170955103 ggccaacatgatgaaacccaatctct-accaaaaat-acaaaaattagctaggcgtggtggtatgtgcctctaatcccaactactcaggaggctgaggcaggagaatcactagggaggtggaagttgcagtgagctgagatcacaccactgcactccagcccaggcaacagagtgagacttcgtctcaaaaaaa-aaCCCAAAAGGTTTTAAAGCCTTAATTATGgtgcttgcttcagcagcagataccctcaaatgggaatcatgcacagaagattagcatggctcctgc-acaaggataacacacaaatttctgtatcattttctactttt-------aatgttcacagcagcactactcacaatagccaaaaggcataaacaaccaaagtgcccatcgactgatgaataaacaaaacacagtatatatccatacaatggaatattattcagccataaagataaata
i macFas5.chr4             I 7900 I 1
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      979385 6827 -   3516910 I
e canFam3.chr35             25908422 7536 +  26524999 I
e saiBol1.JH378348            243208 11181 -    375362 I
e otoGar3.GL873742           1549432 9460 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      242148 10717 -    373274 I
e calJac3.chr4             171416412 11567 - 171630274 I
e colAng1.NW_012115566v1     1894377 9928 -   3067355 I
e manLeu1.NW_012104165v1     2009746 15003 +   2316924 I
e chlSab2.chr17             28330279 8048 -  71996105 I
e cerAty1.NW_012001495v1     1885990 8096 -   2157725 I
e macNem1.NW_012011356v1     2013458 19044 -   2996164 I
e rheMac8.chr4              29372504 8386 + 172585720 I
e nomLeu3.chr1a             74194714 8508 + 122973662 I

a score=184048.000000
s hg38.chr6_GL000254v2_alt    181635 334 +   4827813 ctgaaacatatatatatgtactgaaatatatattttttcatatatatattttttgagatggagtctcattctattgcgtaggctggagtgcaatggcacgatctcggctcactacaacctctgcctcccaggttcaagtgattgtcctgcctcagcctcctgagtagctgggattacaggcatgcgccaccacgcctggctaatttttgtatttttagtagggacggggtttcaccatgttggccaggctggtctcgaactcctgacctcgtgatctgcccacctcggcctcctgaagtgctgggattacaggcgtgagccgccgcgcctggcc
s panTro5.chr6              29169144 332 + 175400573 ccgaaacatatatat--gtactgaaatatatattttttcatatatatattttttgagatggagtctcattctattgcgtaggctggagtgcaatggcacgatctcggctcaccacaacctctgcctcccaggttcaagtgattgtcctgcctcagcctcctgagtagctgggattacaggcatgcgccaccacgcctggctaatttttgtatttttagtagggacggggtttcaccatgttggccaggctggtcttgaactcctgacctcgtgatctgcccacctcggcctcctgaagtgctgggattacaggcgtgagccgccgcgcctggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29403175 332 + 173848474 ccgaaacatatatat--gtactgaaatatatattttttcatatatatattttttgagatggagtctcattctattgcgtaggctggagtgcaatggcacgatctcggctcaccacaacctctgcctcccaggttcaagtgattgtcctgcctcagcctcctgagtagctgggattacaggcatgcgccaccacgcctggctaatttttgtatttttagtagggacggggtttcaccatgttggccaggctggtctcgaactcctgacctcgtgatctgcccacctcggcctcctgaagtgctgggattacaggcgtgagccgccgcgcctggcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5203783 332 +   6154872 ccaaaacatatatat--gtactgaaatatatattttttcatatatatattttttgagacggagtctcactctattgcgtagactggagtgcaatggcgtgatctcggctcactacaacctctgcctcccaggttcaagtgattgtcctgcctcagcctcctgagtagctgggattacaggcatgcgccaccacgcctggctaatttttgtgttttgagtagggacggggtttcaccatgttggccaggctggtctcgaactcctgacctcgtgatctgcccacctcggcctcctgaagtgctgggattacaggcgtgagccaccgcgcctggcc
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      979385 6827 -   3516910 I
e canFam3.chr35             25908422 7536 +  26524999 I
e saiBol1.JH378348            243208 11181 -    375362 I
e otoGar3.GL873742           1549432 9460 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      242148 10717 -    373274 I
e calJac3.chr4             171416412 11567 - 171630274 I
e colAng1.NW_012115566v1     1894377 9928 -   3067355 I
e manLeu1.NW_012104165v1     2009746 15003 +   2316924 I
e chlSab2.chr17             28330279 8048 -  71996105 I
e cerAty1.NW_012001495v1     1885990 8096 -   2157725 I
e macNem1.NW_012011356v1     2013458 19044 -   2996164 I
e macFas5.chr4              29041747   1 - 170955103 I
e rheMac8.chr4              29372504 8386 + 172585720 I
e nomLeu3.chr1a             74194714 8508 + 122973662 I

a score=23702.000000
s hg38.chr6_GL000254v2_alt    181969 41 +   4827813 agtactgaaacatattacaatatgaatgaatctttaaaaaa
s panTro5.chr6              29169476 41 + 175400573 agtactgaaacatattacaatatgaatgaatctttaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29403507 41 + 173848474 agtactgaaacatattacaatatgaatgaatctttaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5204115 41 +   6154872 agtactgaaacatattacaatatgaatgaatctttaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29041748 15 - 170955103 agtactgaaacatat--------------------------
i macFas5.chr4             I 1 C 0
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      979385 6827 -   3516910 I
e canFam3.chr35             25908422 7536 +  26524999 I
e saiBol1.JH378348            243208 11181 -    375362 I
e otoGar3.GL873742           1549432 9460 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      242148 10717 -    373274 I
e calJac3.chr4             171416412 11567 - 171630274 I
e colAng1.NW_012115566v1     1894377 9928 -   3067355 I
e manLeu1.NW_012104165v1     2009746 15003 +   2316924 I
e chlSab2.chr17             28330279 8048 -  71996105 I
e cerAty1.NW_012001495v1     1885990 8096 -   2157725 I
e macNem1.NW_012011356v1     2013458 19044 -   2996164 I
e rheMac8.chr4              29372504 8386 + 172585720 I
e nomLeu3.chr1a             74194714 8508 + 122973662 I

a score=69838.000000
s hg38.chr6_GL000254v2_alt    182010 25 +   4827813 atatgctaagtgataggccgggcgt
s panTro5.chr6              29169517 25 + 175400573 gtatgctaagtgataggccgggcgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29403548 25 + 173848474 gtatgctaagtgataggccgggcgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5204156 25 +   6154872 gtatgctaagtgataggccgggcgt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29380890 25 + 172585720 atatgctaagtgataggccagacgt
i rheMac8.chr4             I 8386 C 0
s macFas5.chr4              29041763 25 - 170955103 atatgctaagtgataggccagacgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2032502 25 -   2996164 atatgctaagtgataggccagacgt
i macNem1.NW_012011356v1   I 19044 C 0
s cerAty1.NW_012001495v1     1894086 20 -   2157725 atatgctaagtgataggcca-----
i cerAty1.NW_012001495v1   I 8096 C 0
s chlSab2.chr17             28338327 25 -  71996105 atatgctaagtgataggccagatgt
i chlSab2.chr17            I 8048 C 0
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      979385 6827 -   3516910 I
e canFam3.chr35             25908422 7536 +  26524999 I
e saiBol1.JH378348            243208 11181 -    375362 I
e otoGar3.GL873742           1549432 9460 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      242148 10717 -    373274 I
e calJac3.chr4             171416412 11567 - 171630274 I
e colAng1.NW_012115566v1     1894377 9928 -   3067355 I
e manLeu1.NW_012104165v1     2009746 15003 +   2316924 I
e nomLeu3.chr1a             74194714 8508 + 122973662 I

a score=897989.000000
s hg38.chr6_GL000254v2_alt    182035 235 +   4827813 ggtggctcacacctgtaatcccaatactttgggaggctgaggtgggtggatcacctgaagtcaggagtttgagactagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccaggggtggtggcgcatgcctgtaataccaactactcggaaggctgaggcaggagaatcgcttgaacctggcaggcggaggttgcggtgagcggagatcgtgc--cgtta
s panTro5.chr6              29169542 235 + 175400573 ggtggctcacacctgtaatcccaatactttgggaggctgaggtgggtggatcacctgaagtcaggagtttgagactagcctgaccaacatggagaaaccccatctctactaaaaatacaaaattagccaggggtggtggcgcatgcctgtaataccaactactcggaaggctgaggcaggagaatcgcttgaacctggcaggcggaggttgcggtgagcagagatcgtgc--cgtta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29403573 235 + 173848474 ggtggctcacacctgtaatcccattactttgggaggctgaggtgggtggatcacctgaagtcaggagtttgagactagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccaggggtggtggcgcatgcctgtaataccaactactcggaaggctgaggcaggagaatcgcttgaacctggcaggcggaggttgcggtgagcagagatcgtgc--cgtta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5204181 234 +   6154872 ggtggctcacacctgtaatcccaatactttgggaggctgaggtgggtggatcacctgaagtcaggagtttgagactagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagcca-gggtggtggcgcatgcctgtaataccaactactcagaaggctgaggcaggagaatcgcttgaacctggctggcggaggttgcagtgagcggagatcgtgc--cgtta
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29380915 235 + 172585720 ggtggctcacgcctgaaatcccaacactttgggaggctgaggcgggtggatcacctgaggtcaggagatctagaccagcctgaccaacatgaagaaaccctatctctactaaaaatacaaaattagccgggcgtggtggcacatgcctgtaatcccagctactcgggaggctggggcaggagaatcacttgaacctgggaggcagaggttgcagtgagctgtgatcgtgc--tatta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29041788 235 - 170955103 ggtggctcacgcctgaaatcccaacactttgggaggctgaggcgggtggatcacctgaggtcaggagatctagaccagcctgaccaacatgaagaaaccctatctctactaaaaatacaaaattagccgggcgtggtggcacatgcctgtaatcccagctactcgggaggctggggcaggagaatcacttgaacctgggaggcagaggttgcagtgagctgtgatcgtgc--tatta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2032527 237 -   2996164 ggtggctcacgcctgaaatcccaacactttgggaggctgaggcgggtggatcacctgaggtcaggagatcgagaccagcctgaccaacatgaagaaaccctatctctactaaaaatacaaaattagccgggcgtggtggcgcatgcctgtaatcccagctactcgggaggctggggcaggagaatcacttgaacctgggaggcagaggttgcagtgagctgtgatcgtgctatatta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1894106 235 -   2157725 ggtggctcacgcctgaaatcccaacactttgggaggctgaggcgggtggatcacctgaggtcaggagattgagaccagcctgaccaacatgaagaaaccctatctctactaaaaatacaaaattagccgggcgtggtggcgcatgcctgtaatcccagctactcgggaggctggggcaggagaatcacttgaacctgggaggcggaggttgcagtgagctgtgatcgtgc--tatta
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28338352 235 -  71996105 ggtggctcacgcctgaaatcccaacactttgggaggctgaggcgggtggatcacctgaggtcaggagattgagaccagcctgaccaacatgaagaaaccctatctctactaagaatacaaaattagttgagcgtggtggcgcatgcctgtaatcccagctactcgggaggctggggcaggagaatcacttgaacctgggaggcggaggttgcagtgagctgcgatcgtgc--tatta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2024749 235 +   2316924 ggtggctcacgcctgaaatcccaacactttgggaggctgaggcgggtggatcacctgaggtcaggagattgagaccagcctgaccaacatgaagaaaccctatctctactaaaaatacaaaattagccgggcgtggtggcgcatgcctgtaatcccagctactcgggaggctggggcaggagaatcacttgaacctgggaggtggaggttgcagtgagctgtgatcgtgc--tatta
i manLeu1.NW_012104165v1   I 15003 C 0
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      979385 6827 -   3516910 I
e canFam3.chr35             25908422 7536 +  26524999 I
e saiBol1.JH378348            243208 11181 -    375362 I
e otoGar3.GL873742           1549432 9460 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      242148 10717 -    373274 I
e calJac3.chr4             171416412 11567 - 171630274 I
e colAng1.NW_012115566v1     1894377 9928 -   3067355 I
e nomLeu3.chr1a             74194714 8508 + 122973662 I

a score=3638464.000000
s hg38.chr6_GL000254v2_alt    182270 782 +   4827813 cactccagcctgggcaacaagagtgaaactctgcctc-------aaaaaaaaaaaaaagtatgctaagtg-aagaaaaaggctacgtactgtatgatttcaattatatctaatatctagaatagactaatccatagagccaggagttaggggtagaaggaaatgaggagtgattgcttaatagtgtgaggtttccttttgggtggtaaaagtgttttagatccagacagtggttgataatt-tacaacactgtggatttactaaatgctactttgtgccagagttttacactttaaaatggtgaaatttaggttacgtatattttacaattaaaaaaaTGAAGAAGGCTGGAAggctggatgtggtggctcacacctgtaatcctagcactttgggaggctgaggcggatggattgcttgagcccaggagttcaagaccagccgaggcaacatggcaaaactccatctctacaaaaattac-acaaattagccaagcatggtggtttacgc---------------ctgtagtcccagctacttgggaggctgaggtgggaggatcatctgagcctgggaggtcaaggctgcggtgagccatgatcatgtcactgcactccggcctgggtttcagagtgagaccctgtctcaaacaacaacaat-a-aaaactaaggaa-aaaaaaA-------CACTCAAGTCcatcttgcaaaaccccaatcctggatgagactgaccatctgcttactcagtgcccacgccagagcagtcaagatttgagaaaGCAAAGCTGATAAGAAAGTTACACGACAGGg
s panTro5.chr6              29169777 773 + 175400573 cactccagcctgggcaacaagagtgaaactctgcctc-------aaaaaaaaaaaaaagtatgctaagtg-aagaaaaaggctacgtactgtatgatttcaattatatctaatatctagaatagactaatccatagagccaggagttaggggtagaaggaaatgaggagtgattgcttaatagtgtgaggtttccttttgggtggtaaaagtgttttagatccagacagtggttggtaatt-tacaacactgtggatttactaaatgctactttgtgccagagttttacactttaaaatggtgaaatttaggttacgtatattttacaattaaaaaaaTGAAGAAGGCTGGAAggctggatgtggtggctcacacctgtaatcctggcactttgggaggctgaggcggatggattgcttgagcccaggagttcaagaccagccgaggcaacatggcaaaactccatctctacaaaaatta----------gccaagcatggtggtttacgc---------------ctgtagtcccagctacttgggaggctgaggtgggaggatcatctgagcctgggaggtcaaggctgcggtgagccatgatcatgtcactgcactctggcctgggtttcagagtgagaccctgtctcaaacaacaacaat-a-aaaactaaggaa-aaaaaaA-------CACTCAAGTCcatcttgcaaaaccccaatcctggatgagactgaccatctgcttactcagtgcccacgccagagcagtcaagatttgagaaaGCAAAGCTGATAAGAAAGTTACACGACAGGg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29403808 786 + 173848474 cactccagcctgggcaacaagagtgaaactctgcctc---------aaaaaaaaaaaagtatgctaagtg-aagaaaaaggctacgtactgtatgatttcaattatatctaatatctagaatagactaatccatagagccaggagttaggggtagaaggaaatgaggagtgattgcttaatagtgtgaggtttccttttgggtggtaaaagtgttttagatccagacagtggttggtaatt-tacaacactgtggatttactaaatgctactttgtgccagagttttacactttaaaatggtgaaatttaggttacgtatattttacaattaaaaaaTAGAAGAAGGCTGGAAggctggatgtggtggctcacacctgtaatcctggcactttgggaggctgaggcggatggattgcttgagcccaggagttcaagaccagccgaggcaacatggcaaaactccatctctacaaaaatta----------gccaagcatggtggtttacgcnnnnnnnnnnnnnnnnnnnngtcccagctactcgggaggctgaggtgggaggatcatctgagcctgggaggtcaaggctgcggtgagccatgatcatgtcactgcactctggcctgggtttcagagtgagaccctgtctcaaacaacaacaat-a-aaaactaaggaa-aaaaaaA-------CACTCAAGTCcatcttgcaaaaccccaatcctggatgagactgaccatctgcttactcagtgcccacgccagagcagtcaagatttgagaaaGCAAAGCTGATAAGAAAGTTACACGACAGGg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5204415 784 +   6154872 cattccagcctgggcaacaagagtgaaactctgcctcaaaaaaaaaaaaaaaaaaaaactatgctaagtg-aagaaaaaggctacgtactgtatgatttcaattatatctaatatctagaatagactaatccatagagccaggagttaggggtagaaggaaatgaggagtgattgcttaatagtgtgaggtttccttttaggtggtaaaagtgttttagatccagacagtggttgataattgtacaacactgtggatttactaaatgctactttgtgccagagttttacactttaaaatggtgaaatttaggttacgtatattttacaattaaaaaaaTGAA--------GAAggttggatgtggtggctcacacctgtaatcctagcactttgggaggctgaggcggatggattgcttgagcccaggatttcaagaccagccgaggcaacatggcaaaactccatctctacaaaaattacaaaaaattagccaagcatggtggtttacgc---------------ctatagtcccagctacttgggaggctgaggtgggaggatcatctgagcctgggaggtcaaggctgcggtgagccatgatcatgtcactgcactccggcctgggtttcagagtgagaccctgtctcaaacaacaacaataa-aaaactaaggaa-aaaaaAA-------CCCTCAAGTCcatcttgcaaaaccccaatcctggatgagactgaccatctgcttactcagtgcccatgccagagcagtcaagatttgagaaaGCAAAGCTGATAAGAAAGTTACACTACAGGg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29381150 777 + 172585720 cactccagcctgggcaacaagaacgaaactccatctc--------aaaaaaaaaaaaagtatgctaagtgaaagaaaaaggctacgtactgtatgatttcaattatatctaatatctagaacagattaatccatagagccaggagttaggggtagaaggaaatgaggagtgattgcttattagtgtgaggtttccttttg---ggtaaaagtgttttggatctagacagtggttgataattgtacaacactgtggatttactaaatgctactttgtgccagagttttacagtttaaaatggtgaaatttaggttatgtatattttacaattaaaaaaaTGAA--------GAAggctggatatggtggctcacacctgtaatcctagcactttgggaggctgaggcaggtagactgcttgagtcccggagttaaagaccagcctaggcaacacggcaaaactccacttctacaaaaattac-aaaaattagccaagcatggtggtttacgc---------------ctgtagtcccagctactcaggaggctgaagtgggaggatcatctgagcctgggaggtcaaggctgcggtgagccatgatcgtgtcactgcactccggcctgggtttcagagtgagaccctgtctcaaacaacaacaat-c-aaaactaagggacaaaaaaaaaaa---CCCTCAAGTCcatcttgcaaaacctcaatcctggatgagactgaccatctgcttacccagtgcccacgccagagcagtcaagatttgagaaaGCAAAACTGATAAGAAAGTTACACAACAGAg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29042023 777 - 170955103 cactccagcctgggcaacaagaacgaaactccatctc--------aaaaaaaaaaaaagtatgctaagtgaaagaaaaaggctacgtactgtatgatttcaattatatctaatatctagaacagattaatccatagagccaggagttaggggtagaaggaaatgaggagtgattgcttattagtgtgaggtttccttttg---ggtaaaagtgttttggatctagacagtggttgataattgtacaacactgtggatttactaaatgctactttgtgccagagttttacagtttaaaatggtgaaatttaggttatgtatattttacaattaaaaaaaTGAA--------GAAggctggatatggtggctcacacctgtaatcctagcactttgggaggctgaggcaggtagactgcttgagtcccggagttaaagaccagcctaggcaacacggcaaaactccacttctacaaaaattac-aaaaattagccaagcatggtggtttacgc---------------ctgtagtcccagctactcaggaggctgaagtgggaggatcatctgagcctgggaggtcaaggctgcggtgagccatgatcgtgtcactgcactccggcctgggtttcagagtgagaccctgtctcaaaaaacaacaat-c-aaaactaagggacaaaaaaaaaaa---CCCTCAAGTCcatcttgcaaaacctcaatcctggatgagactgaccatctgcttacccagtgcccacgccagagcagtcaagatttgagaaaGCAAAACTGATAAGAAAGTTACACAACAGAg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2032764 778 -   2996164 cactccagcctgggcaacaagaacgaaactccatctc------aaaaaaaaaaaaaaagtatgctaagtgaaagaaaaaggctacgtactgtatgatttcaattatatctaatatctagaacagattaatccatagagccaggagttaggggtagaaggaaatgaggagtgattgcttattagtgtgaggtttccttttg---ggtaaaagtgttttggatccagacagtggttgataattgtacaacactgtggatttactaaatgctactttgtgccagagttttacagtttaaaatggtgaaatttaggttatgtatattttacaattaaaaaaaTGAA--------GAAggctggatatggtggctcacacctgtaatcctagcactttgggaggctgaggcaggtagattgcttgagtcccggagttaaagaccagcctaggcaacacggcaaaactccacttctacaaaaattac-aaaaattagccaagcatggtggtttacgc---------------ctgtagtcccagctactcaggaggctgaagtgggaggatcatctgagcctgggaggtcaaggctgcggtgagccatgatcatgtcactgcactccggcctgggtttcagagtgagaccctgtctcaaacaacaacaat-c-aaaactaaggga-aaaaaaaaaaa---CCCTCAAGTCcatcttgcaaaacctcaatcctggatgagactgaccatctgcttacccagtgcccacgccagagcagtcaagatttgagaaaGCAAAACTGATAAGAAAGTTACACAACAGAg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1894341 777 -   2157725 cactccagcctgggcaacaagaacgaaactccatctc-------aaaaaaaaaaaaaagtatgctaagtgaaagaaaaaggctacgtactgtatgatttcaattatatctaatatctagaacagattaatccatagagccaggagtttggggtagaaggaaatgaggagtgattgcttattagtgtgaggtttccttttg---ggtaaaagtgttttggatccagacagtggttgataattgtacaacactgtggatttactaaatgctactttgtgccagagttttacagtttaaaatggtgaaatttaggttatgtatattttacaattaaaaaaaTGAA--------GAAggctggatgtggtggctcacacctgtaatcctagcactttgggaggctgaggcaggtagactgcttgagtcccggagttaaagaccagcctaggcaacacggcaaaactccacttctacaaaaattac-aaaaattagccaagcatggtggtttacgc---------------ctgtagtcccagctactcaggaggctgaagtgggaggatcatctgagcctgggaggtcaaggctgcggtgagccatgatcatgtcactgcactccggcctgggtttcagagtgagaccctgtctcaaacaacaacaat-c-aaaactaaggga-aaaaaaaaAAC---CCCTCAAGTCcatcttgcaaaacctcaatcctggatgagacttaccatctgcttacccagtgcccacgccagagcagtcaagatttgagaaaGCAAAACTGATAAGAAAGTTACACAACAGAg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28338587 783 -  71996105 cactccagcctgggcaacaagaacgaaactccgtctt-------aaaaaaaaaaaaaagtatgctaagtgaaagaaaaaggctacatactgtatgatttcaattatatctaatatctagaatagattaatccatagagccaggagttaggggtagaaggaaatgaggagtgattgcttattagtgtgaggtttccttttgggtggtaaaagtgttttggatccagacagtggttgataattgtacaacactgtggatttactaaatgctactttgtgccagagttttacagtttaaaatggtgaaatttaggtgatgtatattttacaatt-aaaaaTTGAA--------GAAggctggatgtggtggctcccacctgtaatcctagcactttgggaggttgaggcggatagactgcttgagtcccggagttcaagaccagcctaggcaacacagcaaaactccacttctacaaaaattac-aaaaattagccaagcatggtggtttacgc---------------ctgtagtcctagctactcaggaggctgaagtgggaggatcatctgagcctgggaggtcaaggctgcggtgagccatgatcatgtcaccgcactctggcctgggtttcagagtgagaccctgtctcaaacaacaacaat-caaaaaCTAAGGGG-GAAAAAAAAACAAACCCTCAAGTCcatcttgcaaaaccccaatcctggatgagactgaccatctgcttacccagtgcccacgccagagcagtcaagatttgagaaaGCAAAACTGATAAGAAAGTTACACAACAGGg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2024984 777 +   2316924 cactccagcctgggcaacaagaacgaaactccatctc-------aaaaaaaaaaaaaagtatgctaagtgaaagaaaaaggctacgtactgtatgatttcaattatatctaatatctagaacagattaatccatagagccacgagttaggggtagaaggaaatgaggagtgattgcttattagtgtgaggtttccttttg---ggtaaaagtgttttggatccagacagtggttgataattgtacaacactgtggatttactaaatgctactttgtgccagagttttacagtttaaaatggtgaaatttaggttacgtatattttacaattaaaaaaaTGAA--------GAAggctggatgtggtggctcacacctgtaatcctagcactttgggaggctgaggcaggtagactgcttgagtcccggagttaaagaccagcctaggcaacacggcaaaactccacttctacaaaaattac-aaaaattagccaagcatggtggtttacgc---------------ctgtagtcccagctactcaggaggctgaagtgggaggatcatctgagcctgggaggtcaaggctgcggtgagccatgatcatgtcactgcaccccggcctgggtttcagagtgagaccctgtctcaaacaacaacaat-c-aaaactaaggga-aaaaaaaaAAC---CCCTCAAGTCcatcttgcaaaacctcaatcctggatgagacttaccatctgcttacccagtgcccacgccagagcagtcaagacttgagaaaGCAAAACTGATAAGAAAGTTACACAACAGAg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1904305 781 -   3067355 cactccagcctgggcgac-agagcgagactccgtctc----aaaaaaaaaaaaaaaaaatatgctaagtgaaagaaaaagactacatactgtatgatttcaattatatctaatatctagaatagattaatccatagagccaggagttcggggtagaaggaaatgaggagtgattgcttattagtgtgaggtttccttttgggtggtaaaaatgttttggatccagacagtggttgataattgtacaacactgtggatttacgaaatgctactttgtgccagagttttacagtttaaaatggtgaaatttaggttatgtatattttacaattaaaaaaaTGAA--------GAAggctggatgtggtggctcacacctgtaatcctagcactttgggaggctgaggcggatagactgcttgagtcccggagttcaagaccagcctaggcaacacggcaaaactccacttctactaaaattac-aaaaattagccaggcatggtggtttacac---------------ctgcagtcccagctactcaggaggctgaagtgggaggatcatctgagcctgggagatcaaggctgcggtgagccatgatcatgtcaccgcactccggcctgggtttcagagtgagaccctgtctcaaacaacaacaat-c-aaaaccaaggga-aaaaaaaaAA----CCCTCAAGTCcatcttgcaaaaccccaatcctggatgagactgaccatctgcttacccagggcccacaccagagcagtcaagatttgagaaaGCAAAACTGATAAGAAAGTTACACAACAGGg
i colAng1.NW_012115566v1   I 9928 C 0
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      979385 6827 -   3516910 I
e canFam3.chr35             25908422 7536 +  26524999 I
e saiBol1.JH378348            243208 11181 -    375362 I
e otoGar3.GL873742           1549432 9460 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      242148 10717 -    373274 I
e calJac3.chr4             171416412 11567 - 171630274 I
e nomLeu3.chr1a             74194714 8508 + 122973662 I

a score=395188.000000
s hg38.chr6_GL000254v2_alt    183052 79 +   4827813 gctgggcacggtggctcgcacctgtaatcccagcac-tttgggaggccgaggcagaaggatcacct---------gaggtcaggagttc
s panTro5.chr6              29170550 79 + 175400573 gctgggcacggtggctcgcacctgtaatcccagcac-tttgggaggccgaggcagaaggatcacct---------gaggtcaggagttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29404594 79 + 173848474 gctgggcacggtggctcacacctgtaatcccagcac-tttgggaggccgaggcagaaggatcacct---------gaggtcaggagttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5205199 79 +   6154872 gctgggcacggtggctcgcacctctaatcccagcac-tttgggaggccgaggcagaaggatcacct---------gaggtcaggagttc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74203222 88 + 122973662 gccaagcatggtggtttacaactgtagtcccagcta-cttgggaggctgaggtgagaggatcatcttagtctggggaggtcaaggctgc
i nomLeu3.chr1a            I 8508 C 0
s rheMac8.chr4              29381927 80 + 172585720 gctgggcacggtggttcgcacctgttatcccagtgcttttgggaggccgaagcgggcatatcacct---------gaggtcaggagtcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29042800 79 - 170955103 gctgggcacggtggttcgcacctgttatcccagtgc-tttgggaggccgaagcgggcatatcacct---------gaggtcaggagtcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2033542 79 -   2996164 gctgggcacggtggttcgcacctgttatcccagtgc-tttgggaggccgaagcgggcatatcacct---------gaggtcaggagtcc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1895118 79 -   2157725 gctgggcacggtggttcgcacctgttatcccagtgc-tttgggaggccgaagcgggcatatcacct---------gaggtcaggagtcc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28339370 79 -  71996105 gctgggcacggtggttcgcacctgttatcccagtgc-tttgggaggccgaggcaggcgtatcacct---------gaggtcaggagttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2025761 79 +   2316924 gctgggcacggtgtttcgcacctgttatcccagtgc-tttgggaggccgaagcgggcatatcacct---------gaggtcaggagtcc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1905086 79 -   3067355 gctgggcacggtggttcgcacctgttatcccagtgc-tttgggaggctgaggcgggtgtatcacct---------gaagtcaggagttc
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      979385 6827 -   3516910 I
e canFam3.chr35             25908422 7536 +  26524999 I
e saiBol1.JH378348            243208 11181 -    375362 I
e otoGar3.GL873742           1549432 9460 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      242148 10717 -    373274 I
e calJac3.chr4             171416412 11567 - 171630274 I

a score=994505.000000
s hg38.chr6_GL000254v2_alt    183131 180 +   4827813 agga-----------------------ccagcctggccaacatggtgaaactccgtctctataaaaaatacaaaaattagctgggcgtggtggcacatgcctgt-------aatcccagctacttgggaggctga------ggcaggagaattgcttgaacttgagagggggatgttgcagtgagccaagattgcaccactgcactccagcctggg
s panTro5.chr6              29170629 180 + 175400573 agga-----------------------ccagcctggccaacatggtgaaactccgtctctataaaaaatacaaaaattagctgggcgtggtggcacacgcctgt-------aatcccagctacttgggaggctga------ggcaggagaattgcttgaacttgagagggggatgttgcagtgagccaagatcgcaccactgcactccagcctggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29404673 180 + 173848474 agga-----------------------ccagcctggccaacatggtgaaactccgtctctataagaaatacaaaaattagctgggcgtggtggcacacgcctgt-------aatcccagctacttgggaggctga------ggcaggagaattgcttgaacttgagagggggatgttgcagtgagccaaaatcgcaccactgcactccagcctggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5205278 180 +   6154872 agga-----------------------ccagcctggccaacatggtgaaactccgtctctataaaaaatacaaaaattagctgggcatggtggcacacgcctgt-------aatcccagctacttgggaggctga------ggcaggagaattgcttgaacttgagagggggatgttgcagtgagccaagatcgcaccactgcactccaggctggg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74203310 213 + 122973662 ggtgagccatgatcatgtcactgcactccagcctgggtttcagagtgagaccctgtctcaaacaacaata-aaaactaag--gaaaaaaaaaaCTCAGGTCCATCTTGCAAAACCCCAATCCTGGACGAGACTGACCATCTGCTTACTTaattgcttgaacttgggagggggatgttgcagtgagccaagatcgcaccactgcactccagcctggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29382007 180 + 172585720 agga-----------------------ccagcctggccaacatggcgaaactccatctctataaaaaatacaaaaattagctgggtgtggtggcacacacctgt-------aatcccagctacttgggaggctga------ggcaggagaaatgcttgaacctgggagggagatgttgcagtgagcccagattgtgccactgcactccagcctggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29042879 180 - 170955103 agga-----------------------ccagcctggccaacatggcgaaactccatctctataaaaaatacaaaaattagctgggtgtggtggcacacacctgt-------aatcccagctacttgggaggctga------ggcaggagaaatgcttgaacctgggagggagatgttgcagtgagcccagattgtgccactgcactccagcctggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2033621 180 -   2996164 agga-----------------------ccagcctggccaacatggcgaaactccatctctataaaaaatacaaaaattagctgggtgtggtggcacacacctgt-------aatcccagctacttgggaggctga------ggcaggagaaatgcttgaacctgggagggagatgttgcagtgagcccagattgtgccactgcactccagcctggg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1895197 180 -   2157725 agga-----------------------ccagcctggccaacatggcgaaactccatctctataaaaaatacaaaaattagctgggcgtggtggcgcacacctgt-------aatcccagctacttgggaggctga------ggcaggagaaatgctttaacctgggagggagatgttgcagtgagcccagattgtgccactgcactccagcctggg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28339449 180 -  71996105 agga-----------------------ccagcctggccaacatggcgaaactccatctctataacaaatgcaaaaattagccgggcgtggtggcgcacgcctgt-------aatcccagctacatgggaggttga------ggcaggagaaatgcttgaacctgggagggagatgttgcagtgagcccagatcgtgccactgcactccagcctggg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2025840 180 +   2316924 agga-----------------------ccagcctggccaacatggcgaaactccatctctataaaaaatacaaaaattagctgggcgtggtggcgcacacctgt-------aatcccagcaacttgggaggctga------ggcaggagaagtgcttgaacctgggagggagatgttgcagtgagcccagattgtgccactgcactccagcctggg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1905165 172 -   3067355 agga-----------------------ccagcctggcca--------aaactccatctctataaaaaatacaaaaattagccgggcgcggtggcgcacgcctgt-------aatcccagctacttgggaggctga------ggcaggagaaatgcttgaacctgggagggagatgttgcagtgagcccagatcacgccaccgcactccagcctggg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            254389 148 -    375362 Aaga-----------------------ccagcctaggcaacgtgccaaaactacatctctacaaaaattacaaaaattagccaggcatggtggtggacacttgt-------agtcccagctactggggagactga------ggc--------------------------------tgcagtgagccatgatcatgtcactgcactccaaccttgg
i saiBol1.JH378348         I 11181 C 0
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      979385 6827 -   3516910 I
e canFam3.chr35             25908422 7536 +  26524999 I
e otoGar3.GL873742           1549432 9460 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      242148 10717 -    373274 I
e calJac3.chr4             171416412 11567 - 171630274 I

a score=132003.000000
s hg38.chr6_GL000254v2_alt    183311 22 +   4827813 caacagagcaagagtatgtctt
s panTro5.chr6              29170809 22 + 175400573 caacagagcaagagtatgtctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29404853 22 + 173848474 caacagagcaagagtatgtctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5205458 22 +   6154872 caacagagcaagagtatgtctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74203523 22 + 122973662 caacagagcaagactctgtctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29382187 22 + 172585720 cgacagagcaagactctgtctc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043059 22 - 170955103 cgacagagcaagactctgtctc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2033801 22 -   2996164 cgacagagcaagactctgtttc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1895377 22 -   2157725 cgacagagcaagactctgtctc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28339629 22 -  71996105 cgacagagcaagactctgtctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026020 22 +   2316924 cgacagagcaagactctgtctc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1905337 22 -   3067355 cgacagagcaagacttcgtctc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            254537 22 -    375362 tttcagagtgagaccctgtctc
i saiBol1.JH378348         C 0 C 0
s canFam3.chr35             25915958 21 +  26524999 CAACAGAGCAGTGATG-GTCTC
i canFam3.chr35            I 7536 C 0
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      979385 6827 -   3516910 I
e otoGar3.GL873742           1549432 9460 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      242148 10717 -    373274 I
e calJac3.chr4             171416412 11567 - 171630274 I

a score=47373.000000
s hg38.chr6_GL000254v2_alt    183333 14 +   4827813 aaa----------aaaaaaaaaaa---
s panTro5.chr6              29170831 14 + 175400573 aaa----------aaaaaaaaaaa---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29404875 14 + 173848474 aaa----------aaaacaaaaaa---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5205480 14 +   6154872 aaa----------aaaaaaaaaaa---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74203545 14 + 122973662 aaa----------aaaaaaaaaaa---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29382209 14 + 172585720 caa----------aaaaaaaaaga---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043081 14 - 170955103 caa----------aaaaaaaaaga---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2033823 14 -   2996164 caa----------aaaaaaaaaga---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1895399 14 -   2157725 caa----------aaaaaaaaaga---
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28339651 10 -  71996105 taa----------aaaaaaa-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026042 12 +   2316924 caa----------aaaaaaa--GG---
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1905359 14 -   3067355 caa----------aaaaaaaaaga---
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            254559 24 -    375362 aaacagcaacaataaaaagtaaga---
i saiBol1.JH378348         C 0 I 100
s otoGar3.GL873742           1558892 13 -   2232465 -AA----------AGCAAAGCACA---
i otoGar3.GL873742         I 9460 I 1
s canFam3.chr35             25915979 14 +  26524999 -------------AGAAGGCAGGATGG
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      979385 6827 -   3516910 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      242148 10717 -    373274 I
e calJac3.chr4             171416412 11567 - 171630274 I

a score=-15215.000000
s hg38.chr6_GL000254v2_alt    183347 3 +   4827813 aag-
s panPan2.chr6              29404889 3 + 173848474 aaa-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5205494 3 +   6154872 aaa-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74203559 3 + 122973662 aaa-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29382223 1 + 172585720 a---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043095 1 - 170955103 a---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2033837 1 -   2996164 a---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1895413 1 -   2157725 a---
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28339661 1 -  71996105 a---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026054 1 +   2316924 A---
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1905373 1 -   3067355 a---
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1558906 2 -   2232465 -AA-
i otoGar3.GL873742         I 1 I 1
s canFam3.chr35             25915993 3 +  26524999 -AAG
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      979385 6827 -   3516910 I
e saiBol1.JH378348            254583 100 -    375362 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      242148 10717 -    373274 I
e calJac3.chr4             171416412 11567 - 171630274 I
e panTro5.chr6              29170845 0 + 175400573 C

a score=599598.000000
s hg38.chr6_GL000254v2_alt    183350  77 +   4827813 aa---------aGTTACACAA-------C----AGGGCAGAATGGTTACACTATAAATAGATGTTCACTGACCAAATACTCC---------------------------------------TACTAG---------------------------TTCTCGCAA
s panTro5.chr6              29170845  74 + 175400573 ------------GTTACACAA-------C----AGGGCAGAATGGTTACACTATAAATAGATGTTCACTGACCAAATACTCC---------------------------------------TACTAG---------------------------TTCTCGCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29404892  89 + 173848474 aaaaaaaaaaGAGTTA-ACAA-------CACCAAGGGCAGAATGGTTACACTATAAATAGATGTTCACTGACCAAATACTCC---------------------------------------TACTAG---------------------------TTCTTGCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5205497  86 +   6154872 aaaaaaagaaaaGTTACACAA-------C----AGGGCAGAATGGTTACACTATAAATAGATGTTCACTGACCAAATACTCC---------------------------------------TACTAG---------------------------TTCTCGCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74203562  80 + 122973662 tagaa------aGTTACACAG-------C----AGGGCAGAATGGTTACACTATAAATAGATGTGCACTGACCAAATACTCC---------------------------------------TACTAG---------------------------TTCTCGCGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29382224  75 + 172585720 -----------aGTTACACAA-------C----AGGGCAGAATGGTTACATTATAAATAGATGTTCACTGACCAAATGCTCC---------------------------------------TACTAG---------------------------TTCTCGCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043096  75 - 170955103 -----------aGTTACACAA-------C----AGGGCAGAATGGTTACATTATAAATAGATGTTCACTGACCAAATGCTCC---------------------------------------TACTAG---------------------------TTCTCGCAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2033838  75 -   2996164 -----------aGTTACACAA-------C----AGGGCAGAATGGTTACATTATAAATAGATGTTCACTGACCAAATGCTCC---------------------------------------TACTAG---------------------------TTCTCGCAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1895414  75 -   2157725 -----------aGTTACACAA-------C----AGGGCAGAATGGTTACATTATAAATAGATGTTCACTGACCAAATGCTCC---------------------------------------TACTAG---------------------------TTCTCGCAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28339662  75 -  71996105 -----------aGTTACACAA-------C----AGGGCAGAATGGTTACATTATAAATAGATGTTCACTGACCAAATGCTCC---------------------------------------TACTAG---------------------------TTCTTGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026055  75 +   2316924 -----------AGTTACACAA-------C----AGGGCAGAATGGTTACATTATAAATAGATGTTCACTGACCAAATGCTCC---------------------------------------TACTAG---------------------------TTCTCGCAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1905374  75 -   3067355 -----------aGTTACACAA-------C----AGGGCAGAATGGTTACATTATAAATAGATGTTCACTGACCAAATGCTCC---------------------------------------TACTAG---------------------------TTCTGACAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            254683  83 -    375362 ------AAGAAAGTTACACAACAGGACGC----AGGACGGAATGGTTACACT----ATAGATGTTCACTGACCAAGCACTCC---------------------------------------TCCTGG---------------------------TTCTCGCTG
i saiBol1.JH378348         I 100 C 0
s cebCap1.NW_016108108v1      252865  80 -    373274 ------aagaaagttacacaa-------c----aggacagaatggttacactataaatagatgttcacggaccAAACACTCC---------------------------------------TCCTGG---------------------------TTCTCGCTG
i cebCap1.NW_016108108v1   I 10717 C 0
s proCoq1.NW_012147953v1      986212  77 -   3516910 ---------AAAGTCACACAA-------C----AGGGTAGAATGGTCCCACTATAAATGGATGTTAACTGACCAAATAATCC---------------------------------------TACTCT---------------------------ATCTCATAA
i proCoq1.NW_012147953v1   I 6827 C 0
s otoGar3.GL873742           1558909 143 -   2232465 ---------AAAGTCACACAA-------C----AGGGCAGAATAGTCCCACTATAAATGGATGTTTGCTGGGCAAATAATCTACTATggctaggcacagtgcctcagacctgtaatcctagcactcttgaagaccaaggcaggaatattccttgaactcagag
i otoGar3.GL873742         I 1 I 216
s canFam3.chr35             25915996  66 +  26524999 ---------ACAACATCACAG-------C----AAGGCTGACTGG-----------GGCGACGTTCACCGACCAAGTGTTCC---------------------------------------TCCAGT---------------------------AGCTCACAA
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             63172 9159 -    302817 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e calJac3.chr4             171416412 11567 - 171630274 I

a score=286510.000000
s hg38.chr6_GL000254v2_alt    183427 37 +   4827813 ACCAACTGTCTTTCCCATACTCTGAAACAATCATTTC
s panTro5.chr6              29170919 37 + 175400573 ACCAACTGTCTTTCCCATACTCTGAAACAATCATTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29404981 37 + 173848474 ACCAACTGTCTTTCCCATACTCTGAAACAATCATTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5205583 37 +   6154872 ACCAACTGTCTTTCCCATACTCTGAAACAATCATTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74203642 37 + 122973662 ACCGACTGTCTTTCCCATACTCTGAAACAATCATTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29382299 33 + 172585720 ACCC----TCTTTCCCATACCCTGAAACAATCATTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043171 33 - 170955103 ACCC----TCTTTCCCATACCCTGAAACAATCATTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2033913 33 -   2996164 ACCC----TCTTTCCCATACCCTGAAACAATCATTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1895489 33 -   2157725 ACCC----TCTTTCCCATACCCTGAAACAATCATTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28339737 33 -  71996105 ACCC----TCTTTCCCATACCCTGAAACAATCATTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026130 33 +   2316924 ACCC----TCTTTCCCATACCCTGAAACAATCATTTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1905449 33 -   3067355 ACCC----TCTTTCCCATACCCTGAAACAATCATTTC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            254766 37 -    375362 GCCAAGTGACTTTCCCATACTCTCAAACAGTAACTTC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      252945 37 -    373274 GCCAAGTGACTTTCCCATACTCCGAAACAGTAACTGC
i cebCap1.NW_016108108v1   C 0 C 0
s proCoq1.NW_012147953v1      986289 37 -   3516910 ACCAACTATCTctctcatactctgaaacaaatatttc
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1559268 35 -   2232465 accaactg--tgtctcatactccacaacaataatttc
i otoGar3.GL873742         I 216 C 0
s canFam3.chr35             25916062 37 +  26524999 ATCACCTGGTCTTCCCATACTCTAAAAGAGTATTTTC
i canFam3.chr35            C 0 I 257
e dasNov3.JH561790             63172 9159 -    302817 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e calJac3.chr4             171416412 11567 - 171630274 I

a score=766163.000000
s hg38.chr6_GL000254v2_alt    183464 82 +   4827813 TTCCCATACAACAGAAGACTCTCTGACACTAATTCCTGGCATATGTACTTTAGTTCTCATTTCCACCTGCC-TTCTCAGGAAC
s panTro5.chr6              29170956 82 + 175400573 TTCCCATACAACAGAAGACTCTCTGACACTAATTCCTGGCATATGTACTTTAGTTCTCATTTCCACCTGCC-TTCTCAGGAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405018 82 + 173848474 TTCCCATACAACAGAAGACTCTCTGACACTAATTCCTGGCATATGTACTTTAGTTCTCATTTCCACCTGCC-TTCTCAGGAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5205620 82 +   6154872 TTCCCATACAACAGAAGACTCTCTGACACTAATTCCTGGCATATGTACTTTAGTTCTCATTTCCACCTGCC-TTCTCAGGAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74203679 83 + 122973662 TTCCCATACAACAGAAGACTCTCTGAAACTAATTCCTGGCATATGTACTTTAGTTCTCATTTCTGCCTGCCTTTCTCAGGAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29382332 82 + 172585720 TTCCCATACAACAGAAGACCCTCTGGAACTAATTCCTGGCATATGTAGTTTAGTTCTCATTTCCACCTGCG-TTCTCAGGAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043204 82 - 170955103 TTCCCATACAACAGAAGACCCTCTGGAACTAATTCCTGGCATATGTAGTTTAGTTCTCATTTCCACCTGCG-TTCTCAGGAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2033946 82 -   2996164 TTCCCATACAACAGAAGACCCTCTGGAACTAATTCCTGGCATATGTAGTTTAGTTCTCATTTCCACCTGCG-TTCTCAGGAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1895522 82 -   2157725 TTCCCATACAACAGAAGACCCTCTGGAACTAATTCCTGGCATATGTAGTTTAGTTCTCATTTCCACCTGCC-TTCTCAGGAAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28339770 82 -  71996105 TTCCCATACAACAGAAGACCCTCTGGAACTAATTCCTGATATATGTACTTTAGTTCTCATTTCCACCTGCC-TTCTCAGGAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026163 82 +   2316924 TTCCCATACAACAGAAGACCCTCTGGAACTAATTCCTGGCATATGTAGTTTAGTTCTCATTTCCACCTGCC-TTCTCAGGAAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1905482 82 -   3067355 TTCCCATACAACAGAAGACCCCCTGGAACTAATTCCTGGCATAGGTACTTTAGTTCTCATTTCCACCTGCC-TTCTCAGGAAC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            254803 82 -    375362 TTCCCATGTAACAGAAGACCCCGTGAAACTAATTCCTGGCACATAGACTTTAGTTCTAATTTCCACCTGCC-TTCTCAGGAAC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      252982 82 -    373274 TTCCCATGCAATAGAAGACCCTGTGAAACTAATTCCTGGCACATAGATTTTAGTTCTCATTTCCACCTGCC-TTCTCAGGAAC
i cebCap1.NW_016108108v1   C 0 C 0
s proCoq1.NW_012147953v1      986326 81 -   3516910 ttcccatacaacagatgacgctttgaagctaactcctg-tacatgtgcattagtccccattcccacctgcc-ttctcaggaac
i proCoq1.NW_012147953v1   C 0 I 925
s otoGar3.GL873742           1559303 81 -   2232465 ttcccatataacagctgagcccctgaaactaagtcctg-ctcatatgcattagttcccgttcccacctgcc-ttctcaggaac
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             63172 9159 -    302817 I
e canFam3.chr35             25916099 257 +  26524999 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e calJac3.chr4             171416412 11567 - 171630274 I

a score=957.000000
s hg38.chr6_GL000254v2_alt    183546 1 +   4827813 -C
s panTro5.chr6              29171038 1 + 175400573 -C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405100 1 + 173848474 -C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5205702 1 +   6154872 -C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74203762 1 + 122973662 -T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29382414 1 + 172585720 -C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043286 1 - 170955103 -C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034028 1 -   2996164 -C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1895604 1 -   2157725 -C
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28339852 1 -  71996105 -C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026245 1 +   2316924 -C
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1905564 1 -   3067355 -C
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            254885 1 -    375362 -C
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      253064 1 -    373274 -C
i cebCap1.NW_016108108v1   C 0 I 50
s otoGar3.GL873742           1559384 1 -   2232465 a-
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e canFam3.chr35             25916099 257 +  26524999 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e calJac3.chr4             171416412 11567 - 171630274 I

a score=176579.000000
s hg38.chr6_GL000254v2_alt    183547 28 +   4827813 GCACATTGCTGA----TCAG---------TACATGGTttct
s panTro5.chr6              29171039 28 + 175400573 GCACATTGCCGA----TCAG---------TACATGGtttct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405101 28 + 173848474 GCACATTGCTGA----TCAG---------TACATGGtttct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5205703 37 +   6154872 GCACATTGCTGA----TCAGTACATGGTTTACATGGTTTCt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74203763 28 + 122973662 GCACATTGCTGA----TCAG---------CACATGGTTTCt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29382415 28 + 172585720 GCATACTGCTGA----TCAG---------TACATAGtttct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043287 28 - 170955103 GCATACTGCTGA----TCAG---------TACATAGtttct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034029 28 -   2996164 GCACACTGCTGA----TCAG---------TACATAGtttct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1895605 28 -   2157725 GCACACTGCTGA----TCAG---------TACATAGtttct
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28339853 28 -  71996105 GCACAATGCTGA----TCAG---------TACATAGTTTCt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026246 28 +   2316924 GCACACTGCTGA----TCAG---------TACACAGtttct
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1905565 28 -   3067355 GCACAATGCTGA----TCAG---------TACATAGtttct
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            254886 28 -    375362 ACGCACTGTTCA----TCAG---------TGTATCGTTTCT
i saiBol1.JH378348         C 0 I 1
s otoGar3.GL873742           1559385 32 -   2232465 gcacattgcacacacgttag---------tccattatttct
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e canFam3.chr35             25916099 257 +  26524999 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      253065 50 -    373274 I
e calJac3.chr4             171416412 11567 - 171630274 I

a score=691609.000000
s hg38.chr6_GL000254v2_alt    183575 143 +   4827813 ------ttcttcctttc---ttttttt-----tttttttggagacagggtttcgctc--attgcccaggctggaatgcaatggcgcaatctcggctcactgcaaccatcgtctcactggttcaagcgatt----ctcctgcctcagcct-cctgagtagctggg
s panTro5.chr6              29171067 138 + 175400573 ------ttcttccttt--------ttt-----tttttttggagacagggtttcgctc--attgcccaggctggaatgcaatggcgcaatctcggctcactgcaaccatcgtctccctggttcaagcgatt----ctcctgcctcagcct-cctgagtagctggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405129 139 + 173848474 ------ttcttccttt-------tttt-----tttttttggagacagggtttcgctc--attgcccaggctggaatgcaatggcgcaatctcggctcactgcaaccatcgtctccctggttcaagcgatt----ctcctgcctcagcct-cctgactagctggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5205740 145 +   6154872 ------ttcttcctttc--tttttttt-----tttttttggagacagggtttcgctc--gttgcccaggctggaatgcaatggcgcaatctcagctcactgcaaccatcgtctccctggttcaagcgatt----ctcctgcctcagcctccccgagtagctggg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74203791 148 + 122973662 ------ttcttccttcttttttttttt-----ttttttttgagacagggtttcgctcttgctgcccaggctggagtgcaatggcgccatctcggctcactgcaaccattgtctcccaggttcaagcgatt----ctcctgcctcagcct-cctgagtagctggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29382443 143 + 172585720 ------ttctttctttc-----tctct-----tttttattgagacgaagttttgctcttgttgcccaggctggagtgcaatggtgcgatctcggctcactgcaatctctgcctccatggttcaagcaatt----ctcctgcctcagcct-cccgagtagctggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043315 143 - 170955103 ------ttctttctttc-----tctct-----tttttattgagacgaagttttgctcttgttgcccaggctggagtgcaatggtgcgatctcggctcactgcaatctctgcctccatggttcaagcaatt----ctcctgcctcagcct-cccgagtagctggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034057 143 -   2996164 ------ttctttctttc-----tctct-----tttttattgagacgaagttttgctcttgttgcccaggctggagtgcaatggtgcgatctcggctcactgcaatctctgcctccatggttcaagcaatt----ctcctgcctcagcct-cccgagtagctggg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1895633 143 -   2157725 ------ttctttctttc-----tctct-----tttttattgagacggagttttgctcttgttgcccaggctggagtgcaatggtgcgatctcggctcactgcaatctctgcctccatggttcaagcagtt----ctcctgcctcagcct-cccaagtagctggg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28339881 148 -  71996105 ------ttctttctttc-----tttctctctcttttttttgagacggggtttcgctcttgttgcccaggctggagtgcaatggcacgatctcagctcactgcaatctctgcctccatggttcaagcaatt----ctcctgcctcagcct-cctgagtagctggg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026274 143 +   2316924 ------ttctttctttc-----tctct-----tttttattgagacggagttttgctcttgttgcccaggctggagtgcaatggtgcgatctcggctcactgcaatctctgcctccatggttcaagcaatt----ctcctgcctcagcct-cccgagtagctggg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1905593 138 -   3067355 ------ttctttctctc---------------ttttttttgagacggggtttcgctcttgttgcccaggctggagtgcagtggcacgatctcggctcactgcaatctccacctccatggttcaagcaagt----ctcctgcctcagcct-cccgagtagctggg
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1559417 133 -   2232465 tatagcttctatgtctt---------------tctccacctagaaaccttatagattctatttcccacac-atacttcaaaaat---atgttggctca-----------gcacctgtggctcaagcggctaaggcaccagccacataca-cctaaggtggcggg
i otoGar3.GL873742         C 0 I 222
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e canFam3.chr35             25916099 257 +  26524999 I
e saiBol1.JH378348            254914   1 -    375362 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      253065  50 -    373274 I
e calJac3.chr4             171416412 11567 - 171630274 I

a score=1017303.000000
s hg38.chr6_GL000254v2_alt    183718 176 +   4827813 attacaagcatgcgccaccacacccggctaattttgtatttttaatagagatggggtttctccatgttggtcaggctggtctcaatctcccgacctcaggtgatctgcccacctcggcctcccaaagtgctgggattacaggcatgagccaccgtgcccggccAGTATATGGTTTC
s panTro5.chr6              29171205 176 + 175400573 attacaagcatgcgccaccacacccggctaattttgtatttttagtagagatggagtttctccatgttggtcaggctggtctcaatctcccgacctcaggtgatctgcccacctcggcctcccaaagtgctgggattacaggcatgagccaccgtgcccggccAGTATATGGTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405268 176 + 173848474 attacaagcatgcgccaccacacccggctaattttgtatttttagtagagatggagtttctccatgttggtcaggctggtctcaatctcccgacctcaggtgatctgcccacctcggcctcccaaagtgctgggattacaggcatgagccaccgtgcccggccAGTATATGGTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5205885 176 +   6154872 attacaagcatgcgccaccacaccctgctaattttgtatttttagtagagatggggtttctccatgttggtcaggctggtctctatctcccgacctcaggtgatctgcccacctcggcctcccaaagtgctgggattacaggcatgagccaccgtgcccggccAGTATATGGTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74203939 176 + 122973662 attacaagcatgcgccaccacacctggctaattttgtatttttagtagggatggggtttctccatgttggtcaggctggtctccatctcccgacctcaggtgatctgcccacctcggcctcccaaagtgctgggattacaggcatgagccaccgggcccggccAGTATATGGTTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29382586 176 + 172585720 attacaggcatgcgccaccatgcccagctaattttgtatttttagtagagatggggtttctccatgttagtcaggttggtctcgatctcccgacctcaggcgatctccccaccttggcctcccaaagtgctgggattacaggcataagccaccatgcccggGCAGTATATGGTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043458 176 - 170955103 attacaggcatgcgccaccatgcccagctaattttgtatttttagtagagatggggtttctccatgttagtcaggttggtctcgatctcccgacctcaggcgatctccccaccttggcctcccaaagtgctgggattacaggcataagccaccatgcccggGCAGTATATGGTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034200 176 -   2996164 attacaggcatgcgccaccatgcccagctaattttgtatttttagtagagatggggtttctctatgttagtcaggttggtctcgatctcccgacctcaggcgatctccccaccttggcctcccaaagtgctaggattacaggcataagccaccatgcccggGCAGTATATGGTTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1895776 176 -   2157725 attacaggcatgcgccaccatgcccggctaattttgtatttttagtagagatggggtttctccatgttagtcaggttggtctcgatctcctgacctcaggcgatctgcccaccttggcctcccaaagtgctgggattacaggcataagccaccatgcctggGCAGTATATGGTTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340029 176 -  71996105 attacaggcatgtgccaccatgcctggctaattttgtatttttagtagagatggggtttctccatgtcagtcaggttggtctcgatctcctgacctcaggcgatctgcccaccttggcctcccaaagtgctgggattacaggcataagccaccgtgcccggccAGTATATGGTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026417 176 +   2316924 attacaggcatgcgccaccatgcccggctaattttgtatttttagtagagatggggtttctccatgttagtcaggttggtctcgatcccctgacttcaggcgatctgcccaccttggcctcccaaagtgctgggattacaggcataagccaccatgcccggGCAGTATATGGTTTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1905731 176 -   3067355 attacaggcatgcgccaccatgcctggctaattttgtatttttagtagagatggggtttctccatgttagtcaggttggtctcgatctcccgacctcaggcgatctggccaccttggcctcccaaagtgctgggattataggcataagccaccgtgcccggccAGTATATGGTTTC
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e canFam3.chr35             25916099 257 +  26524999 I
e saiBol1.JH378348            254914   1 -    375362 I
e otoGar3.GL873742           1559550 222 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      253065  50 -    373274 I
e calJac3.chr4             171416412 11567 - 171630274 I

a score=14196.000000
s hg38.chr6_GL000254v2_alt    183894 2 +   4827813 TT
s panTro5.chr6              29171381 2 + 175400573 TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405444 2 + 173848474 TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206061 2 +   6154872 TT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74204115 2 + 122973662 TT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29382762 2 + 172585720 TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043634 2 - 170955103 TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034376 2 -   2996164 TT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1895952 2 -   2157725 TT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340205 2 -  71996105 TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026593 2 +   2316924 TT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1905907 2 -   3067355 TT
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25916356 2 +  26524999 TT
i canFam3.chr35            I 257 C 0
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e saiBol1.JH378348            254914 1 -    375362 I
e otoGar3.GL873742           1559550 222 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      253065 50 -    373274 I
e calJac3.chr4             171416412 11567 - 171630274 I

a score=90451.000000
s hg38.chr6_GL000254v2_alt    183896 13 +   4827813 GTGGCTTCAGTGT
s panTro5.chr6              29171383 13 + 175400573 GTGGCTTCAGTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405446 13 + 173848474 GTGGCTTCAGTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206063 13 +   6154872 GTGGCTTCAGTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74204117 13 + 122973662 GTGGCTTCGGTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29382764 13 + 172585720 GTGGCTTCGATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043636 13 - 170955103 GTGGCTTCGATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034378 13 -   2996164 GTGGCTTCAATGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1895954 13 -   2157725 GTGGCTTCAATGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340207 13 -  71996105 GTGGTTTCAGTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026595 13 +   2316924 GTGGCTTCAATGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1905909 13 -   3067355 GTGGCTTCAGTGT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            254915 13 -    375362 GCGACTTCAGTGT
i saiBol1.JH378348         I 1 I 4
s canFam3.chr35             25916358 13 +  26524999 ACAGCTTCAATGA
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e otoGar3.GL873742           1559550 222 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      253065 50 -    373274 I
e calJac3.chr4             171416412 11567 - 171630274 I

a score=218246.000000
s hg38.chr6_GL000254v2_alt    183909 24 +   4827813 TCTCCCTCACCTAGAAACCTTACA
s panTro5.chr6              29171396 24 + 175400573 TCTCCCTCACCTAGAAACCTTACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405459 24 + 173848474 TCTCCCTCACCTAGAAACCTTACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206076 24 +   6154872 TCTCCCTCACCTAGAAACCTTACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74204130 24 + 122973662 TCTCCCTCACCTGGAAACTTTGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29382777 24 + 172585720 TCTCCCTCATCTAGAAACCTTACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043649 24 - 170955103 TCTCCCTCATCTAGAAACCTTACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034391 24 -   2996164 TCTCCCTCATCTAGAAACCTTACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1895967 24 -   2157725 TCTCCCTCATCTAGAAATCTTACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340220 21 -  71996105 TCTC---CATCTAGAAACCTTACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026608 24 +   2316924 TCTCCCTCATCTAGAAACCTTACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1905922 24 -   3067355 TCTCCCTCATCTAGAAACCTTACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171427979 24 - 171630274 TCTCTCTCACCTGGAAACCTTACA
i calJac3.chr4             I 11567 C 0
s saiBol1.JH378348            254932 24 -    375362 TCTCTCTCACCTGGAAACCTTACA
i saiBol1.JH378348         I 4 C 0
s cebCap1.NW_016108108v1      253115 24 -    373274 TCTCCCTTACCTGGAAACCTTACA
i cebCap1.NW_016108108v1   I 50 C 0
s canFam3.chr35             25916371 23 +  26524999 CTTTCCTCACCCAG-ATCCTTACA
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             63172 9159 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e otoGar3.GL873742           1559550 222 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I

a score=117349.000000
s hg38.chr6_GL000254v2_alt    183933 16 +   4827813 ACATATACTCCTTTC-C
s panTro5.chr6              29171420 16 + 175400573 ACATATACTCCTTTC-C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405483 16 + 173848474 ACATATACTCCTTTC-C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206100 16 +   6154872 ACATACACTCCTTTC-C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74204154 16 + 122973662 ACATAGACTCCTTTC-C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29382801 16 + 172585720 ATATAGACTCCTTTC-C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043673 16 - 170955103 ATATAGACTCCTTTC-C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034415 16 -   2996164 ATATAGACTCCTTTC-C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1895991 16 -   2157725 ATATAGACTCCTTTC-C
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340241 16 -  71996105 ATATAGACTCCTTTC-C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026632 16 +   2316924 ATATAGACTCCTTTC-C
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1905946 16 -   3067355 ATATAGACTCCTTTC-C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171428003 15 - 171630274 ACATAGACTCCTTTC--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            254956 15 -    375362 ACACAgactcctttc--
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      253139 16 -    373274 ACATAGACTCCTTTCC-
i cebCap1.NW_016108108v1   C 0 I 3
s canFam3.chr35             25916394 15 +  26524999 ACAGACTCTCCTCCC--
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             72331 15 -    302817 acatccactccccCA--
i dasNov3.JH561790         I 9159 C 0
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e otoGar3.GL873742           1559550 222 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I

a score=62702.000000
s hg38.chr6_GL000254v2_alt    183949 10 +   4827813 ATACGTATTT
s panTro5.chr6              29171436 10 + 175400573 ATATGTATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405499 10 + 173848474 ATATGTATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206116 10 +   6154872 ATATGTATTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74204170 10 + 122973662 ATATGTATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29382817 10 + 172585720 ATATGTATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043689 10 - 170955103 ATATGTATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034431 10 -   2996164 ATATGTATTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1896007 10 -   2157725 ATATGTACTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340257 10 -  71996105 GTATGTATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026648 10 +   2316924 ATATGTATTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1905962 10 -   3067355 ATATGTATTT
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25916409 10 +  26524999 ACATGATCTC
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             72346 10 -    302817 ACACGTTCTT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e saiBol1.JH378348            254971  0 -    375362 C
e otoGar3.GL873742           1559550 222 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      253155  3 -    373274 I
e calJac3.chr4             171428018  0 - 171630274 C

a score=202439.000000
s hg38.chr6_GL000254v2_alt    183959 39 +   4827813 TGAAAATATGTCTAACTTCTAGTTTC-TTTAAC--CAACCCT
s panTro5.chr6              29171446 39 + 175400573 TGAAAATATGTCTAACTTCTAGTTTC-TTTAAC--CAACCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405509 39 + 173848474 TGAAAATATGTCTAACTTCTAGTTTC-TTTAAC--CAACCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206126 40 +   6154872 TGAAAATATGTCTAACTTCTAGTTTCTTTTAAC--CAACCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74204180 39 + 122973662 TGAAAATATGTCTAACTTCTAGTTTC-TTTAAC--TAACCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29382827 39 + 172585720 TGAAAATATGTCTAACTTCTAGTTTC-TTTAAC--CAACCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043699 39 - 170955103 TGAAAATATGTCTAACTTCTAGTTTC-TTTAAC--CAACCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034441 39 -   2996164 TGAAAATATGTCTAACTTCTAGTTTC-TTTAAC--CAACCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1896017 39 -   2157725 TGAAAATATGTCTAACTTCTAGTTTC-TTTAAC--CAACCCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340267 39 -  71996105 TGAAAATATGTCTAACTTCTAGTTTC-TTTAAC--CAACCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026658 39 +   2316924 TGAAAATATGTCTAACTTCTAGTTTC-TTTAAC--CAACCGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1905972 39 -   3067355 TGAAAATATGTCTAACTTCTAGTTTC-TTTAAC--CAACCCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171428018  4 - 171630274 ---------------CTGC-----------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            254971  4 -    375362 ---------------ccac-----------------------
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1559772 35 -   2232465 aaaatatatgtttaact---agtttc-cttagcatcatc---
i otoGar3.GL873742         I 222 C 0
s canFam3.chr35             25916419 36 +  26524999 TGACAATATGTTTAGTTT---GTTTC-TTTAAG--CATCCCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             72356 36 -    302817 TTAAAATAGCTCTAACG---AGTTTC-CTCAAG--CATCTTC
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      253155  3 -    373274 I

a score=471935.000000
s hg38.chr6_GL000254v2_alt    183998 47 +   4827813 TCCAGATAAAACTCCATAATCCTGTCTCGTCTCTAAGTATTTTATTA
s panTro5.chr6              29171485 47 + 175400573 TCCAGATAAAACTCCATAATCCTGTCTCGTCTCTAAGTATTTTATTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405548 47 + 173848474 TCCAGATAAAACTCCATAATCCTGTCTCGTCTCTAAGTATTTTATTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206166 47 +   6154872 TCCGGATAAAACTCCATAATCCTGTCTCGTCTCTAAGTATTTTATTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74204219 47 + 122973662 TCCAGATAAAACTCCATAATCCTGTCTCATCTCTAAATATTTTATTA
i nomLeu3.chr1a            C 0 M 100
s rheMac8.chr4              29382866 47 + 172585720 TCCAGATAAAACTCCATAATCCTGTCTCGTCTCTAAGTattttatta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043738 47 - 170955103 TCCAGATAAAACTCCATAATCCTGTCTCATCTCTAAGTattttatta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034480 47 -   2996164 TCCAGATAAAACTCCATAATCCTGTCTCGTCTCTAAGTattttatta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1896056 47 -   2157725 TCCAGATAAAACTCCATAATCCTGTCTCGTCTCTAAGTattttatta
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340306 47 -  71996105 TCTAGATAAAACTCCATAATCCTGTCTCGTCTCTAAGTattttatta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026697 47 +   2316924 TCCAGACAAAACTCCATAATCCTATCTCGTCTCTAAGTattttatta
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1906011 47 -   3067355 TCCAGATAAAACGCCATAATCCTGTCTCGTCTCTAAGTattttatta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171428022 47 - 171630274 TCCAGATAAAActccatcatcctgcctcatctctaggtattttatta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            254975 47 -    375362 tccaggtaaaactccatcatcctgcctcatctctaggtattttatga
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      253158 47 -    373274 TCCAGATAAAACTCCATCATCCCGCCTCACCTCTAGGTATTTTATTA
i cebCap1.NW_016108108v1   I 3 C 0
s otoGar3.GL873742           1559807 43 -   2232465 tccacagacagctccagaatcctaccacatctc----tattttctta
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25916455 41 +  26524999 -TCCCACAAAGTCCCACAATCCC----CACCTCTCCTTATGGTCTT-
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             72392 37 -    302817 ----------TCCCCACAATCCTGCCCCACCACTCAGTATTTTCTTA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I

a score=14655.000000
s hg38.chr6_GL000254v2_alt    184045 2 +   4827813 -CA
s panTro5.chr6              29171532 2 + 175400573 -CA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405595 2 + 173848474 -CA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206213 2 +   6154872 -CA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29382913 2 + 172585720 -ca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043785 2 - 170955103 -ca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034527 2 -   2996164 -ca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1896103 2 -   2157725 -ca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340353 2 -  71996105 -ca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026744 2 +   2316924 -ca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1906058 2 -   3067355 -ca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171428069 2 - 171630274 -ca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            255022 2 -    375362 -ca
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      253205 2 -    373274 -CA
i cebCap1.NW_016108108v1   C 0 I 1469
s otoGar3.GL873742           1559850 2 -   2232465 -ca
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             72429 2 -    302817 CC-
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e canFam3.chr35             25916496 0 +  26524999 C
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e nomLeu3.chr1a             74204266 100 + 122973662 M

a score=58232.000000
s hg38.chr6_GL000254v2_alt    184047 7 +   4827813 Acccctt
s panTro5.chr6              29171534 7 + 175400573 Acccctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405597 7 + 173848474 Acccctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206215 7 +   6154872 Acccctt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29382915 7 + 172585720 tcccctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043787 7 - 170955103 tcccctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034529 7 -   2996164 tcccctt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1896105 7 -   2157725 tcccctt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340355 7 -  71996105 ttccctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026746 7 +   2316924 tcccctt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1906060 7 -   3067355 tcccctt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171428071 7 - 171630274 ccctctc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            255024 7 -    375362 ccccctt
i saiBol1.JH378348         C 0 I 5
s otoGar3.GL873742           1559852 7 -   2232465 tcccctc
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25916496 7 +  26524999 ACCCCTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             72431 7 -    302817 TCCCCTC
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      253207 1469 -    373274 I
e nomLeu3.chr1a             74204266 100 + 122973662 M

a score=58716.000000
s hg38.chr6_GL000254v2_alt    184054 17 +   4827813 aacagttgta---cttgaaa-
s panTro5.chr6              29171541 17 + 175400573 aacagttgta---cttgaaa-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405604 17 + 173848474 aacagttgta---cttgaaa-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206222 17 +   6154872 aacagttgta---cttgaaa-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29382922 17 + 172585720 cacagttgta---cttcaaa-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043794 17 - 170955103 cacagttgta---cttcaaa-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034536 17 -   2996164 cacagttgta---cttcaaa-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1896112 17 -   2157725 cacagttgta---cttcaaa-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340362 17 -  71996105 cacagctgta---cttcaaa-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026753 17 +   2316924 cacagttgta---cttcaaa-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1906067 17 -   3067355 cacagttgta---cttcaaa-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171428078  3 - 171630274 -------------ctc-----
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1559859 19 -   2232465 -atagtcatatttcttgaaa-
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25916503  2 +  26524999 ------------------AA-
i canFam3.chr35            C 0 I 2
s dasNov3.JH561790             72438 18 -    302817 CACAATCCTA---TTTCTTAA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e saiBol1.JH378348            255031  5 -    375362 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      253207 1469 -    373274 I
e nomLeu3.chr1a             74204266 100 + 122973662 M

a score=733551.000000
s hg38.chr6_GL000254v2_alt    184071 110 +   4827813 tagtcatctacttgtgtagtctccattcacctgacctagtcacta----ctcaactccccctaatgtggctcct-------gccccaattattccattgtgatagttctacctaagatcac-
s panTro5.chr6              29171558 110 + 175400573 tagtcatctacttgtgtagtctccattcacctgacctagtcacta----ctcaactccccctaatgtggctcct-------gccccaattattccattgtgatagttctacctaagatcac-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405621 110 + 173848474 tagtcatctacttgtgtagtctccattcacctgacctagtcacta----ctcaactccccctaatgtggctcct-------gccccaattattccattgtgatagttctacctaagatcac-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206239 110 +   6154872 tagtcatctacttgtgtagtctccattcacctaacctagtcacta----ctcaactccccctaatgtggctcct-------gccccaattattccattctgatagttctacctaaggtcac-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29382939 109 + 172585720 tagtcatctacttgtgtagtctccattcacctaacctagccagca----ctcaactcccactaatgtggctcct-------gccccaattattccattgtggtagttctacataaggtta--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043811 109 - 170955103 tagtcatctacttgtgtagtctccattcacctaacctagccagca----ctcaactcccactaatgtggctcct-------gccccaattattccattgtggtagttctacataaggtta--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034553 109 -   2996164 tagtcatctacttgtgtagtctccattcacctaacctagccagca----ctcaactcccactaatgtggctcct-------gccccaattattccattgtggtagttctacataaggtta--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1896129 109 -   2157725 tagtcatctacttgtgtagtctccattcatctaacctagccagca----ctcaactcccactaatgtggctcct-------gccccaattattccattgtggtagttctacataaggtta--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340379 109 -  71996105 tagtcatctacttgtgtagtctccattcacctaacctagccagca----ctcaactcccactaatgtggctcct-------gccccaattattccactgtggtagttctacataagatta--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026770 108 +   2316924 tagtcatctacttg-gtagtctccattcacctaacctagccagca----ctcaactcccactaatgtggctcct-------gccccaattattccattgtggtagttctacataaggtta--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1906084 109 -   3067355 tagtcatctacttgtgtagtctccattcacctaacctagccagca----ctcagatcccactaatgtggctcct-------gccccaattattccattgtggtagttctacataaggtta--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171428081 102 - 171630274 -agtcatctacttgtgcagtctcc----------tccagtccctgctcactcagctccctctaatatggctccc-------gccccagttattccattgtgacagttctacagaaggtct--
i calJac3.chr4             C 0 I 3
s saiBol1.JH378348            255036 102 -    375362 cagtcacctacttgtgcagtctccggt-------tcaggtccctg----ctcaactccctctaatatggctcct-------gccccaagtattccactgtggcagttctacatgaggtct--
i saiBol1.JH378348         I 5 I 3
s otoGar3.GL873742           1559878 106 -   2232465 ---taacctgctcttgcagtcttcattcaccccaccctgtcacta----ctcaactccccctaccatggctcct-------ggctaaattattccactgtggcagttctgcataaagtca--
i otoGar3.GL873742         C 0 I 1
s canFam3.chr35             25916507 109 +  26524999 CAGACACCCATTCCTACAGTGGTCACACACCCTGCC-AGTCACCA---------CTGTCCCTAGGATGGTTCCTTAGGGAAGTGTTAAGTGTT-TACTGTGGCACTTCTCTCTGAGGGCA--
i canFam3.chr35            I 2 I 1
s dasNov3.JH561790             72456 101 -    302817 AAGTTAAGGACCCTTGCCATCTCCATTCACCCCACCCGGTCAGCA----CTCAACACCTC-------GACGGCG-------GCTCAAACTGCT-CACTGCGGCAGCGCTA-GTAAGGGCA-C
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      253207 1469 -    373274 I
e nomLeu3.chr1a             74204266 100 + 122973662 M

a score=5013.000000
s hg38.chr6_GL000254v2_alt    184181 1 +   4827813 c
s panTro5.chr6              29171668 1 + 175400573 c
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405731 1 + 173848474 c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206349 1 +   6154872 c
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74204366 1 + 122973662 C
i nomLeu3.chr1a            M 100 C 0
s rheMac8.chr4              29383048 1 + 172585720 c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043920 1 - 170955103 c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034662 1 -   2996164 c
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1896238 1 -   2157725 c
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340488 1 -  71996105 c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026878 1 +   2316924 c
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1906193 1 -   3067355 c
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171428186 1 - 171630274 t
i calJac3.chr4             I 3 C 0
s saiBol1.JH378348            255141 1 -    375362 t
i saiBol1.JH378348         I 3 C 0
s otoGar3.GL873742           1559985 1 -   2232465 a
i otoGar3.GL873742         I 1 C 0
s canFam3.chr35             25916617 1 +  26524999 T
i canFam3.chr35            I 1 C 0
s dasNov3.JH561790             72557 1 -    302817 C
i dasNov3.JH561790         C 0 I 833
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      253207 1469 -    373274 I

a score=714747.000000
s hg38.chr6_GL000254v2_alt    184182 84 +   4827813 aatgatggtcatgttattgaatcaaatgggtatcagctttg------------atattatttgacctcaactgcat--tactatgctgtccactccct--
s panTro5.chr6              29171669 84 + 175400573 aatgatggtcatgttattgaatcaaatgggtatcagctttg------------atattatttgacctcaactgcat--tactatgttgtccactccct--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405732 84 + 173848474 aatgatggtcatgttattgaatcaaatgggtatcagctttg------------atattatttgacctcaactgcat--tactatgttgtccactccct--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206350 84 +   6154872 aatgatggtcatgttattgaatcaaatgggtatcagctttg------------atattatttgacctcaactgcat--tactatgttgtccactccct--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74204367 84 + 122973662 AATGATGGTCATGTTATTGAATCAAATGGGTATCAGCTTTG------------ATATTATTTGCACTCAACTCCAT--TACTATGTTGTCGACTCCCT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29383049 84 + 172585720 aatgatggtcatgttattgaatcaaatgggtatcagctctg------------atattgtttgacctcaactgcat--tactatgttgtccactccct--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29043921 84 - 170955103 aatgatggtcatgttattgaatcaaatgggtatcagctctg------------atattgtttgacctcaactgcat--tactatgttgtccactccct--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034663 84 -   2996164 aatgatggtcatgttattgaatcaaatgggtatcagctctg------------atattgtttgacctcaactgcat--tactatgttgtccactccct--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1896239 84 -   2157725 aatgatggtcatgttattgaatcaaatgggtatcagctctg------------atattatttgacctcaattgcat--tactatgttgtccactccct--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340489 84 -  71996105 aatgatggtcatgttattgaatcaaatgggtatcagctttg------------atattatttgacctcaattgcat--tactatgttgtccactccct--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026879 84 +   2316924 aatgatggtcatgttattgaatcaaatgggtatcagctctg------------atattatttgacctcaattgcat--tactatgttgtccactccct--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1906194 84 -   3067355 aatgatggtcatgttattgaatcaaatgggtatcagctttg------------atattatttgacctcaattgcat--tactatgttgtccactccct--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171428187 96 - 171630274 aataacggtcatgctattaaatcaaatttgcaccagctttgcaattcacagtaatgtaatttcacctcaattgcat--tagtatggtgtccactccct--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            255142 96 -    375362 aataatggtcatgctattaaatcaaatttgcatcagctttgcaattcatagtaatgcgatttcacctcaattgcat--tactatggtgttcactccct--
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1559986 84 -   2232465 aataatggttgtattgttaaaccaaatggatatcagttctg------------atattatttaacctgagttgtat--taccctgtcgtccactctct--
i otoGar3.GL873742         C 0 I 539
s canFam3.chr35             25916618 73 +  26524999 AGCAATGCCCGTGGCTTTAAACCAAATGCGTGTCAGCCCTT---------------------------AACTGCATGAGACTCTGCTGTCCACTCCTCCT
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             72558 833 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      253207 1469 -    373274 I

a score=39637.000000
s hg38.chr6_GL000254v2_alt    184266 5 +   4827813 tcttG
s panTro5.chr6              29171753 5 + 175400573 ccttG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405816 5 + 173848474 ccttG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206434 5 +   6154872 ccttG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74204451 5 + 122973662 CCTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29383133 5 + 172585720 ccttG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29044005 5 - 170955103 ccttG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034747 5 -   2996164 ccttG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1896323 5 -   2157725 ccttG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340573 5 -  71996105 ccttG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026963 5 +   2316924 ccttG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1906278 5 -   3067355 ccttG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171428283 5 - 171630274 ccttc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            255238 5 -    375362 ccttc
i saiBol1.JH378348         C 0 C 0
s canFam3.chr35             25916691 5 +  26524999 TCCTG
i canFam3.chr35            C 0 I 1045
e dasNov3.JH561790             72558 833 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e otoGar3.GL873742           1560070 539 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      253207 1469 -    373274 I

a score=17381.000000
s hg38.chr6_GL000254v2_alt    184271 2 +   4827813 CT
s panTro5.chr6              29171758 2 + 175400573 CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405821 2 + 173848474 CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206439 2 +   6154872 CT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74204456 2 + 122973662 CT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29383138 2 + 172585720 CT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29044010 2 - 170955103 CT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034752 2 -   2996164 CT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1896328 2 -   2157725 CT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340578 2 -  71996105 CT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026968 2 +   2316924 CT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1906283 2 -   3067355 CT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171428288 2 - 171630274 ct
i calJac3.chr4             C 0 I 1560
s saiBol1.JH378348            255243 2 -    375362 ct
i saiBol1.JH378348         C 0 I 313
e dasNov3.JH561790             72558 833 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e canFam3.chr35             25916696 1045 +  26524999 I
e otoGar3.GL873742           1560070 539 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      253207 1469 -    373274 I

a score=285112.000000
s hg38.chr6_GL000254v2_alt    184273 60 +   4827813 TCGTCTCaaaaa-taaaa-aaagaaaaa--------aagaaagaaagaaaTACATTTTTCTGATTTTTAC
s panTro5.chr6              29171760 56 + 175400573 TCGTCTCaaaaa-taaaa-aaattaaaa--------aagaaagaaa----TACATTTTTCTGATTTTTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405823 56 + 173848474 TCGTCTCaaaaa-taaaa-aaattaaaa--------aagaaagaaa----TACATTTTTCTGATTTTTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206441 61 +   6154872 TCGTCTCaaaaa-taaaataaaaaaaaa--------aagaaaaaaagaaaTACATTTTTCTGATTTTTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74204458 67 + 122973662 TTGTCTCaaaaa-taaaa-aataaaaaaaaa-gaggaagaaaaaaagaaaTACATTTTTCTGATTTTTAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29383140 68 + 172585720 CCATCTCaaaaa-taaaa-aaaagaagaaaaagaggaagaaaaaaagaaaTACATTTTTCTGATTTTTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29044012 68 - 170955103 CCATCTCaaaaa-taaaa-aaaagaagaaaaagaggaagaaaaaaagaaaTACATTTTTCTGATTTTTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034754 69 -   2996164 CCATCTCAAAAATTaaaa-aaaagaagaaaaagaggaagaaaaaaagaaATACATTTTTCTGATTTTTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1896330 68 -   2157725 CCATCTCaaaaa-taaaa-aaaagaagaaaaagaggaagaaaaaaagaaaTACATTTTTCTGATTTTTCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340580 66 -  71996105 CCATCTCAAAAA-TAAAA-AAAAGAAGAAAA--AGGCAGAAAAAAATAAATACATTTTTCTGATTTTTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2026970 68 +   2316924 CCATCTCaaaaa-taaaa-aaaagaagaaaaagaggaagaaaaaaagaaaTACATTTTTCTGATTTTTCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1906285 68 -   3067355 CCATCTCaaaaa-taaaa-aaaagaagaaaaggaggaagaaaaaaagaaATACATTTTTCTGATTTTTCC
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             72558 833 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e canFam3.chr35             25916696 1045 +  26524999 I
e saiBol1.JH378348            255245 313 -    375362 I
e otoGar3.GL873742           1560070 539 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      253207 1469 -    373274 I
e calJac3.chr4             171428290 1560 - 171630274 I

a score=2046234.000000
s hg38.chr6_GL000254v2_alt    184333 331 +   4827813 CATTTAAAAATGTA-AACTggcctgacgctgtggctcacacttgtaatcccaacactttgggaggccgaggagggcagatcac--gaggtcaggagtttgagaccagcctgaccaatatggtgaaaccccgtctctactaaaaatacaaaaattagccagccatggtggtgtgcgcctgtaatctcagctactcaggaggtt------------gaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagccaagatcgcaccactgcactccagcctgggcaacagagcaagactcaatctcaaaataaataaaTAATATTAAATTAAAATTaaa
s panTro5.chr6              29171816 331 + 175400573 TATTTAAAAATGTA-AACTggccagacgctgtggctcacacttgtaatcccaacactttgggaggccgaggagggcggatcac--gagggcaggagtttgagaccagcctgaccaatatggtgaaaccccgtctctactaaaaatacaaaaattagccagccatggtggcgtgcgcctgtaatctcagctactcaggaggtt------------gaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagccaagatcgcaccactgcactccagcctgggcaacagagcaagactcaatctcaaaataaataaaTAATATTAAATTAAAATTaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29405879 331 + 173848474 TATTTAAAAATGTA-AACTggccagacgctgtggctcacacttgtaatcccaacactttgggaggccgaggagggcggatcac--gagggcaggagtttgagaccagcctgaccaatatggtgaaaccccgtctctactaaaaatacaaaaattagccagccatggtggcgtgcgcctgtaatctcagctactcaggaggtt------------gaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccaagatcgcaccactgcactccagcctgggcaacagagcaagactcaatctcaaaataaataaaTAATATTAAATTAAAATTaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206502 331 +   6154872 CATTTAAAAATGTA-AACTggccagacgctgtggctcacacctgtaatcccaacactttgggaggccgaggagggcggatcac--gaggtcaggagtttgagaccagcctgaccaacatggtgaaaccccgtctctaataaaaacacaaaaatgagccagccatggtggtgtgcgcctgtaatctcagctactcaggaggtt------------gaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagccaagattgcaccactgcactccagcctgggcaacagagcaagactcaatctcaaaataaataaaTAATATTAAATTAAAATTaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74204525 330 + 122973662 CATTTAaaaatgta-aactgg-caggcgccgtggctcacacctgtaatcccaacactttgggaggccaaggagggcagatcac--gaggtcaggagttcaagaccagcctgaccaacatggtgaaaccccacctctactaaaaatacaaaaattagccaggcgtggtggtgtacacctgtaatctcagctactcaggaggtt------------gaggcaggagaatcgcttgaacccaggaggcggaggctgcagtgaaccaagatcgcaccactgcactccagcctgggcaacagagcaagactcagtctcaaaataaataaataatattaaattaaaattaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29383208 343 + 172585720 CATTTAAAAATGTA-ACCTggctgggtgcggtggctcacgcctataatcccaacactttggggggccgaggaaggcggatcac--gaggtgaggaattcgagatcagcctgaccaatatggtgaaaccccgtctctagtaaaagtacaaaaattagccaggcatggtggtgtgcgcctgtaatcccagctattcaggaggttnnnnnnnnnnnnnnnnnnnnagaatcgcttgaacccaggaggcagagattacagtgagccgagatcacaccactgcactccagcctgggcaacagagcaagactcagtctcaaaataaataaaTAATACTAAATTAAAATTaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29044080 331 - 170955103 CATTTAAAAATGTA-ACCTggctgggtgcggtggctcacgcctataatcccaacactttggggggccgaggaaggcggatcac--gaggtgaggaattcgagatcagcctgaccaatatggtgaaaccccgtctctagtaaaagtacaaaaattagccaggcatggtggtgtgcgcctgtaatcccagctattcaggaggtt------------gaggcaggagaatcgcttgaacccaggaggcagagattacagtgagccgagatcacaccactgcactccagcctgggcaacagagcaagactcagtctcaaaataaataaaTAATACTAAATTAAAATTaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2034823 331 -   2996164 CATTTAAAAATGTA-ACCTggctgggtgcggtggctcacgcctataatcccaacactttggggggccgaggaaggcggatcac--gaggtgaggaattcgagatcagcctgaccaatatggtgaaaccccgtctctagtaaaaatacaaaaattagccaggcatggtggtgtgcgcctgtaatcccagctattcaggaggtt------------gaggcaggagaatcgcttgaacccaggaggcagagattacagtgagccgagatcacaccactgcactccagcctgggcaacagagcaagactcagtctcaaaataaataaaTAATACTAAATTAAAATTaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1896398 327 -   2157725 CATTTAAAAATGTA-ACCTggctgggtgcggtggctcacgcctataatcccaacactttggggggccgaggaaggtggatcac--gaggtaaggaattcgagatcagcctgaccaatatggtgaaaccccatctctagtaaaaatacaaaaattagccaggcatggtggtgtgcgcctataatcccagttactcaggaggtt------------gaggcaggagaatcgcttgaacccaggaagcagagattacagtgagccaagatcgcaccactgcactccagcctgggcaacagagcgagactcagtctca----aaataaaTAATACTAAATTAAAATTaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340646 331 -  71996105 CATTTAAACATGTA-GCCTgactgggtgcggtggctcacgcctataatcccaacactttggggggccgaggacagcggatcac--gaggtgaggaattcgagatcagcccgaccaatatggtgaaaccccgtctctagtaaaaatacaaaaattagccagggatggtggtgtgcacctgtaatcccaactactcaggaggtt------------gaggcaggagaatcgcttgaacccaggaggcagaggttacagtgagccgagatcgcaccactgcactccagcctgggcaacagagcaagactcagtctcaaaataaataaaTAATACTAAATTAAAATTaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2027038 327 +   2316924 CATTTAAAAATGTA-ACCTggctgggtgcagtggctcacgcctataatcccaacactttggggggccgaggaaggtggatcac--gaggtaaggaattcgagatcagcctgaccaatatggtgaaaccccatctctagtaaaaatacaaaaattagccaggcatggtggtgtgcgcctgtaatcccagttactcaggaggtt------------gagacaggagaatcgcttgaacccaggaggcagagattacagtgagccgagatcgcaccactgcactccagcctgggcaacagagcaagactcagtctca----aaataaaTAATACTAAATTAAAATTaaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1906353 331 -   3067355 CATTTAaaaatgta-aattggctgggtgcagtggctcacgcctataatcccaacaatttgggaggccgaggaaggcggatcat--gaggtgagaaatttgagatcagcctgaccaatatggtgaaaccccgtctctagtaaaaatacaaaaattagccaggcatggtggtgtgcacctgtaatcccagctactcaggaggtt------------gaggcaggagaatcgcttgaacccaggaggcagaggttacaatgagccgagatcgcaccactgcactccagcctgggcaacagagcaagactcagtctcaaaataaacaaataatactaaattaaaattaaa
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            255558 333 -    375362 catataataaaatacatctggctgggcgcagtggctcacacctgtaatcccagcacattgggaggctgaggcaggtggatcacttgaggtcaagagttcaagaccagcctgggtaacatggtgaaaccccatctataataaaaagatgaaaattagctgggtgtggtgaagggcacctgtaatcccagctaccca-gaggct------------gaggcaggagaattgcttgagcccaggaggcggaggttgcagtgagctgagatcacatcactgtgctccctcctgggggacagagttagacttcatctcaaaaaaaggaaaaaaagaaaaagaaaaagaaaa
i saiBol1.JH378348         I 313 I 40
e dasNov3.JH561790             72558 833 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e canFam3.chr35             25916696 1045 +  26524999 I
e otoGar3.GL873742           1560070 539 -   2232465 I
e aotNan1.NW_018494050v1      175348 10915 -    285216 I
e cebCap1.NW_016108108v1      253207 1469 -    373274 I
e calJac3.chr4             171428290 1560 - 171630274 I

a score=77919.000000
s hg38.chr6_GL000254v2_alt    184664 10 +   4827813 atgtaaaaac
s panTro5.chr6              29172147 10 + 175400573 atgtaaaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29406210 10 + 173848474 atgtaaaaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206833 10 +   6154872 atgtaaaaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74204855 10 + 122973662 atgtaaaaAC
i nomLeu3.chr1a            C 0 I 310
s rheMac8.chr4              29383551 10 + 172585720 atgtaaaaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29044411 10 - 170955103 atgtaaaaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2035154 10 -   2996164 atgtaaaaac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1896725 10 -   2157725 acgtaaaaac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340977 10 -  71996105 acgtaaaaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2027365 10 +   2316924 acgtaaaaac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1906684 10 -   3067355 acgtaaaaAC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            255931 10 -    375362 atataaaaac
i saiBol1.JH378348         I 40 C 0
s aotNan1.NW_018494050v1      186263 10 -    285216 atgtaaaaac
i aotNan1.NW_018494050v1   I 10915 C 0
e dasNov3.JH561790             72558 833 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e canFam3.chr35             25916696 1045 +  26524999 I
e otoGar3.GL873742           1560070 539 -   2232465 I
e cebCap1.NW_016108108v1      253207 1469 -    373274 I
e calJac3.chr4             171428290 1560 - 171630274 I

a score=574030.000000
s hg38.chr6_GL000254v2_alt    184674 74 +   4827813 catacttatt---gcccaggacatacaaaaacaggggatggaccataatttgCTGACCCTTGCCCTATGCCATCATC
s panTro5.chr6              29172157 74 + 175400573 catacttatt---gcccaggacatacaaaaacaggggatggaccataatttgCTGACCCTTGCCTTATGCCATCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29406220 74 + 173848474 catacttatt---gcccaggacatacaaaaacaggggatggaccataatttgctgacccttgCCCTATGCCATCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206843 74 +   6154872 cacacttatt---gcccaggacatacaaaaacaggggatggaccacaatttgCTGACCCTTGCCCTATGCCATCATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74205175 74 + 122973662 CATACTTATT---GCCCAGGACACACAAAAACAGGTGATGAACCATAATTTGCTGACCCTTGCCCTATGCCATCATC
i nomLeu3.chr1a            I 310 C 0
s rheMac8.chr4              29383561 74 + 172585720 catacttact---gcccaggacatacaaaaacaagtgatggaccataatttgCTGACCCTTGCCCTATGCCATCATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29044421 74 - 170955103 catacttact---gcccaggacatacaaaaacaagtgatggaccataatttgCTGACCCTTGCCCTATGCCATCATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2035164 74 -   2996164 catacttact---gcccaggacatacaaaaacaagtgatggaccataatttgCTGACCCTTGCCCTATGCCATCATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1896735 74 -   2157725 catacttact---gcccaggacatacaaaaacaagtgatggaccataatttgCTGACCCTTGCCCTGTGCTATCATC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28340987 74 -  71996105 catacttatt---gcccaggacatacaaaaacaagtgatggaccatactttgcTGACCCTTGCCCTATGCCATCATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2027375 74 +   2316924 catacttact---gcccaggacatacaaaaacaagtgatggaccataatttgCTGACCCTTGCCCTATGCTATCATC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1906694 74 -   3067355 CATACTTATT---GCCCAAGACATACAAAAACAAGTGTTGGACCATAATTTGCTGACCCTTGCCCTATGCCATCATA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            255941 74 -    375362 catacttatc---gcccaggacatacaaacacaggtgatggaccATAATCTGCTGACCCTTGCTTTATGCCATCATC
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      186273 77 -    285216 catacttatctaagcccaggacacacaaacacaggtgatggaccATAATCTGCTGACCCTTGCCTTATGCCATCATC
i aotNan1.NW_018494050v1   C 0 I 152
e dasNov3.JH561790             72558 833 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e canFam3.chr35             25916696 1045 +  26524999 I
e otoGar3.GL873742           1560070 539 -   2232465 I
e cebCap1.NW_016108108v1      253207 1469 -    373274 I
e calJac3.chr4             171428290 1560 - 171630274 I

a score=42446.000000
s hg38.chr6_GL000254v2_alt    184748 13 +   4827813 C------ATTTTTATtttt
s panTro5.chr6              29172231 13 + 175400573 C------ATTTTTAttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29406294 13 + 173848474 C------ATTTTTATtttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206917 13 +   6154872 C------ATTTTTATtttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74205249 10 + 122973662 C------ATttttatt---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29383635 11 + 172585720 C------Atttttattt--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29044495 11 - 170955103 C------Atttttattt--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2035238 11 -   2996164 C------Atttttattt--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1896809 11 -   2157725 C------Atttttattt--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28341061 11 -  71996105 C------Atttttattt--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2027449 11 +   2316924 C------Atttttattt--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1906768 17 -   3067355 CAtttttatttttattt--
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            256015 13 -    375362 ------GATTTTTTTTTTT
i saiBol1.JH378348         C 0 I 129
e dasNov3.JH561790             72558 833 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e canFam3.chr35             25916696 1045 +  26524999 I
e otoGar3.GL873742           1560070 539 -   2232465 I
e aotNan1.NW_018494050v1      186350 152 -    285216 I
e cebCap1.NW_016108108v1      253207 1469 -    373274 I
e calJac3.chr4             171428290 1560 - 171630274 I

a score=249070.000000
s hg38.chr6_GL000254v2_alt    184761 61 +   4827813 attttttattatttatttatttttttgagac-agagtctcgctctgttgcccaggctggagt
s panTro5.chr6              29172244 61 + 175400573 atttttaattatttatttatttttttgagac-agagtctcgctctgttgcccaggctggagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29406307 61 + 173848474 attttttattatttatttatttttttgagac-agagtctcactctgttgcccaggctggagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206930 61 +   6154872 attttttattatttatttatttttttgagac-agagtctcgctctgttgcccaggctggagt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74205259 50 + 122973662 -----------ttcatttatttttttgagac-agagtctcgttctgttgcccaggctggagt
i nomLeu3.chr1a            C 0 M 1021
s rheMac8.chr4              29383646 50 + 172585720 -----------tttatttg-ttttttgagacaagagtctcattctgtcgcccaggctggagt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29044506 50 - 170955103 -----------tttatttg-ttttttgagacaagagtctcattctgtcgcccaggctggagt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2035249 50 -   2996164 -----------tttatttg-ttttttgagacaagagtctcattctgtcgcccaggctggagt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1896820 50 -   2157725 -----------tttatttg-ttttttgagacaagagtctcattctgtcgcccaggctggagt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28341072 50 -  71996105 -----------tttatttg-ttttttgagacaagagtctcattctgtcgcccaggctggagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2027460 50 +   2316924 -----------tttatttg-ttttttgagacaagagtctcattctgtcgcccaggctggagt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1906785 50 -   3067355 -----------tttatttg-ttttttcagacaagagtcttgctctgtcgcccaggctggagt
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             72558 833 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e canFam3.chr35             25916696 1045 +  26524999 I
e saiBol1.JH378348            256028 129 -    375362 I
e otoGar3.GL873742           1560070 539 -   2232465 I
e aotNan1.NW_018494050v1      186350 152 -    285216 I
e cebCap1.NW_016108108v1      253207 1469 -    373274 I
e calJac3.chr4             171428290 1560 - 171630274 I

a score=904671.000000
s hg38.chr6_GL000254v2_alt    184822 200 +   4827813 acagtggcgcgatcttggctcactgcaaccacttcctcctggttttgggcaattccttgcctcagcctcccgcgtagctgggactacaggcacaccgccatgcctggctaatttttgtatttttagtagagacggggtttccccatcttggccaggctagtcttgaagtcctagaccttgtgatccacccgcctcggccc
s panTro5.chr6              29172305 200 + 175400573 gcagtggcgcgatcttggctcacggcaaccacttcctcctggttttgggcaattccttgcctcagcctcccgcgtagctgggactacaggcacatcgccatgcctggctaatttttgtatttttagtagagacggggtttccccatcttggccaggctagtcttgaagtcctagaccttgtgatccacccgcctcggccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29406368 200 + 173848474 gcagtggcgtgatcttggctcactgcaaccacttcctcctggttttgggcaattccttgcctcagcctcccgcgtagctgggactacaggcacatcgccatgcctggctaatttttgtatttttagtagagacggggtttccccatcttggccaggctagtcttgaagtcctagaccttgtgatccacccgcctcggccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5206991 200 +   6154872 gcagtggcgcgatcttggctcactgcaaccacctcctcctagttttgggcaattccttgcctcagcctcccgcgtagctgggactacaggcacactgccatacctggctaatttttgtatttttagtagagacggggtttccccatcttggccaggctggtcttgaagtcctagaccttgtgatccacccgcctcggccc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29383696 199 + 172585720 gtagtggtgtgatcttggctcaccgcaacctcctcctcctgggttcaggcaattccttgcctcagtctcccgtgtagctgagactataggcacatcgccatg-acggctaatttttgtatttttagtagagacggggtttcaccctattggccaggctggtcttgaactcctagacctcatgatccaccctcctcagccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29044556 199 - 170955103 gtagtggtgtgatcttggctcaccgcaacctcctcctcctgggttcaggcaattccttgcctcagtctcccgtgtagctgagactataggcacatcgccatg-acggctaatttttgtatttttagtagagacggggtttcaccctattggccaggctggtcttgaactcctagacctcatgatccaccctcctcagccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2035299 199 -   2996164 gtagtggtgtgatcttggctcaccgcaacctcctcctcctgggttcaggcaattccttgcctcagtctcccgtgtagctgagactataggtacatcgccatg-acggctaatttttgtatttttagtagagacggggtttcaccctattggccaggctggtcttgaactcctagacctcatgatccaccctcctcagccc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1896870 200 -   2157725 gtagtggcgtgatcttggctcactgcaacctcctcctcctgggttcaggcaattccttgcctcagtctcctgtgtagctgagactataggcacatggccatgcccggctaatttttgtatttttagtagagacgcggtttcaccctattggccaggctggtcttgaactcccagacctcatgatccaccctcctcggccc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28341122 200 -  71996105 gcaggggcgtgatcttggctcactgcaacctcctcctcctgggttcaggcaattccttgcctcagtctcccgtgtagctgagactataggcacatcgccatgcccggctaatttttgtattcttagtagagacggggtttcaccctattggccaggctggtcttgaactcctagacctcatgatccaccctcctcggccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2027510 200 +   2316924 gtagtggcgtgatcttggctcactgcaacctcctcctcctgggttcaggcaattccttgcctcagtctcctgtgtagctgagactataggcacatcgccatgcccggctaatttttgtatttttagtagagacgcggtttcaccctattggccaggctggtcttgaactcccagacctcaagatccaccctcctcggccc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1906835 200 -   3067355 gtagtggcgtgatcttggctcactgcaacctcctcctcctgagttcaggcaattccttgcctcagtctcccgtgcagctgagactataggcacatcaccatgcccggctaattttcgtatttttagtagaaacagggtttcaccctattggccaggatggtcttgaactcctagacctcatgatccacccgcctcggccc
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             72558 833 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e canFam3.chr35             25916696 1045 +  26524999 I
e saiBol1.JH378348            256028 129 -    375362 I
e otoGar3.GL873742           1560070 539 -   2232465 I
e aotNan1.NW_018494050v1      186350 152 -    285216 I
e cebCap1.NW_016108108v1      253207 1469 -    373274 I
e calJac3.chr4             171428290 1560 - 171630274 I
e nomLeu3.chr1a             74205309 1021 + 122973662 M

a score=8602.000000
s hg38.chr6_GL000254v2_alt    185022 3 +   4827813 ccc
s panTro5.chr6              29172505 3 + 175400573 ccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29406568 3 + 173848474 ccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5207191 3 +   6154872 cac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74206335 3 + 122973662 ccc
i nomLeu3.chr1a            M 1021 C 0
s rheMac8.chr4              29383895 3 + 172585720 cac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29044755 3 - 170955103 cac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2035498 3 -   2996164 tgc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1897070 3 -   2157725 cgc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28341322 3 -  71996105 ctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2027710 3 +   2316924 cgc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1907035 3 -   3067355 ccc
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             72558 833 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e canFam3.chr35             25916696 1045 +  26524999 I
e saiBol1.JH378348            256028 129 -    375362 I
e otoGar3.GL873742           1560070 539 -   2232465 I
e aotNan1.NW_018494050v1      186350 152 -    285216 I
e cebCap1.NW_016108108v1      253207 1469 -    373274 I
e calJac3.chr4             171428290 1560 - 171630274 I

a score=227535.000000
s hg38.chr6_GL000254v2_alt    185025 38 +   4827813 aaagtgctgggattacaggtgtgagccactgcacctgg
s panTro5.chr6              29172508 38 + 175400573 aaagtgctgggattacaggtgtgagccactgcacctgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29406571 38 + 173848474 aaagtgctgggattacaggtgtgagccactgcacctgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5207194 38 +   6154872 aaagtgctgggattacaggtgtgagccaccgcacctgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74206338 38 + 122973662 aaaatgctgggattacaggtgtgagccgccacacctgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29383898 38 + 172585720 aaaatgctgggattacaggtgtgagccactgtgcctgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29044758 38 - 170955103 aaaatgctgggattacaggtgtgagccactgtgcctgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2035501 38 -   2996164 aaaatgctgggattacaggtgtgagccactgtgcctgg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1897073 38 -   2157725 aaaatgctgggattacaggtgtgagccactgcgcctgg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28341325 38 -  71996105 aaaatgctgggattacaggtgtgagccactgcgcctgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2027713 38 +   2316924 aaaatgctgggattacaggtgtgagccactgcgcctgg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1907038 38 -   3067355 aaaatgctgggattacaggtgtgagccactgcgcctgg
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1560609 31 -   2232465 aaagtgatgggc-------tataatttgctgacccttg
i otoGar3.GL873742         I 539 C 0
e dasNov3.JH561790             72558 833 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e canFam3.chr35             25916696 1045 +  26524999 I
e saiBol1.JH378348            256028 129 -    375362 I
e aotNan1.NW_018494050v1      186350 152 -    285216 I
e cebCap1.NW_016108108v1      253207 1469 -    373274 I
e calJac3.chr4             171428290 1560 - 171630274 I

a score=16257.000000
s hg38.chr6_GL000254v2_alt    185063 2 +   4827813 cc
s panTro5.chr6              29172546 2 + 175400573 cc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29406609 2 + 173848474 cc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5207232 2 +   6154872 cc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74206376 2 + 122973662 cc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29383936 2 + 172585720 cc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29044796 2 - 170955103 cc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2035539 2 -   2996164 cc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1897111 2 -   2157725 cc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28341363 2 -  71996105 cc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2027751 2 +   2316924 cc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1907076 2 -   3067355 cc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171429850 2 - 171630274 ct
i calJac3.chr4             I 1560 C 0
s saiBol1.JH378348            256157 2 -    375362 CT
i saiBol1.JH378348         I 129 C 0
s otoGar3.GL873742           1560640 2 -   2232465 CT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             72558 833 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e canFam3.chr35             25916696 1045 +  26524999 I
e aotNan1.NW_018494050v1      186350 152 -    285216 I
e cebCap1.NW_016108108v1      253207 1469 -    373274 I

a score=108566.000000
s hg38.chr6_GL000254v2_alt    185065 13 +   4827813 ---CGCCATCATCCAT
s panTro5.chr6              29172548 13 + 175400573 ---CGCCATCATCCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29406611 13 + 173848474 ---CGCCATCATCCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5207234 13 +   6154872 ---CGCCATCATCCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74206378 13 + 122973662 ---CGCCATCATCCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29383938 13 + 172585720 ---TGCCATCATCCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29044798 13 - 170955103 ---TGCCATCATCCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2035541 13 -   2996164 ---TGCCATCATCCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1897113 13 -   2157725 ---TGCCATCATCCAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28341365 13 -  71996105 ---TGCCATCATCCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2027753 13 +   2316924 ---TGCCATCATCCAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1907078 13 -   3067355 ---TGCTATCATCCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171429852 13 - 171630274 ---tgccatcataaat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            256159 13 -    375362 ---CGCCATCATAAAA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      186502 13 -    285216 ---CGCCATCATAAAT
i aotNan1.NW_018494050v1   I 152 C 0
s otoGar3.GL873742           1560642 16 -   2232465 CTATCCCATCATCCCT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             72558 833 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e canFam3.chr35             25916696 1045 +  26524999 I
e cebCap1.NW_016108108v1      253207 1469 -    373274 I

a score=267832.000000
s hg38.chr6_GL000254v2_alt    185078 33 +   4827813 TTTTAATGGC-T-------------------------------------TTTATCAAATACCTATAAGA-----------ac
s panTro5.chr6              29172561 33 + 175400573 TTTTAATGGC-T-------------------------------------TTTATCAAATACCTATAAGA-----------ac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29406624 33 + 173848474 TTTTAATGGC-T-------------------------------------TTTATCAAATACCTATAAGA-----------ac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5207247 33 +   6154872 TTTTAATGGC-T-------------------------------------TTTATCAAATACCTATAAGA-----------ac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74206391 33 + 122973662 TTTTAATGGC-T-------------------------------------TTTATCAAATACCTACAAGA-----------ac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29383951 35 + 172585720 TTTTAATGGC-TTT----------------------------------ATTTATC-AATACCTGTAAGA-----------ac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29044811 35 - 170955103 TTTTAATGGC-TTT----------------------------------ATTTATC-AATACCTGTAAGA-----------ac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2035554 35 -   2996164 TTTTAATGGC-TTT----------------------------------ATTTATC-AATACCTGTAAGA-----------ac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1897126 32 -   2157725 TTTTAATGGC-T-------------------------------------TTTATC-AATACCTATAAGA-----------ac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28341378 32 -  71996105 TTTTAATGGC-T-------------------------------------TTTATC-AATACCTGTAAGA-----------AC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2027766 32 +   2316924 TTTTAATGGC-T-------------------------------------TTTATC-AATACCTGTAAGA-----------ac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1907091 69 -   3067355 TTTTAATGGC-TTTTATCAATACCTATAAGAACTGTCTTTTTAATGGCTTTTATC-AATACCTATAAGA-----------AC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171429865 32 - 171630274 ttttaatagc-t-------------------------------------tttatc-aatatttataaaa-----------ac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            256172 32 -    375362 TTTTAATGGC-T-------------------------------------TTTATC-AATACCTATAAAA-----------Ac
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      254676 32 -    373274 TTTTAATGGC-T-------------------------------------TTTATC-AATACCTATAAAA-----------Ac
i cebCap1.NW_016108108v1   I 1469 C 0
s aotNan1.NW_018494050v1      186515 32 -    285216 TTTTAATGGC-T-------------------------------------TTTATC-AACACCTATAAAA-----------AC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1560658 44 -   2232465 TGTTAATGACAT-------------------------------------TTTATC-AACACCTGTGATAACTGTTCACTTAC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             72558 833 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I
e canFam3.chr35             25916696 1045 +  26524999 I

a score=732640.000000
s hg38.chr6_GL000254v2_alt    185111 65 +   4827813 tatctgatcgccacactaaaat---ataa--ttcaggaaagcttatttggcacttaatcccagtgcctag
s panTro5.chr6              29172594 65 + 175400573 tgtctgatcgccacactaaaat---ataa--ttcaggaaagcttatttggcacttaatcccagtgcctag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29406657 65 + 173848474 tgtctgatcgccacactaaaat---ataa--ttcaggaaagcttatttggcacttaatcccagtgcctag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5207280 65 +   6154872 tgtctgatcgccacactaaaat---ataa--ttcaggaaagcttatttggcacttaatcccagtgcctag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74206424 65 + 122973662 tgtctgatcgccacactaaaat---ataa--ttcaggaaagcttatttggcacttaatcccagtgcctag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29383986 65 + 172585720 tgtctgatcgccacactaaaat---ataa--ttcaggaaagcttatctggcacttaatctcagtgcctag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29044846 65 - 170955103 tgtctgatcgccacactaaaat---ataa--ttcaggaaagcttatctggcacttaatctcagtgcctag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2035589 65 -   2996164 tgtctgatcgccacactaaaat---ataa--ttcaggaaagcttatctggcacttaatctcagtgcctag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1897158 65 -   2157725 tgtctgatcgccacactaaaat---ataa--ttcaggaaagcttatctggcacttaatctcagtgcctag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28341410 65 -  71996105 TGTCTGATCGCCACACTAAAAT---ATAA--TTCAGGAAAGCttatttggtacttaatctcagtgcctag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2027798 65 +   2316924 tgtctgatcgccacactaaaat---ataa--ttcaggaaagcttatctggcacttaatctcagtgcctag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1907160 68 -   3067355 TGTCTGATCAACACACTAAAATATAATAA--TTCAGGAAAGCTTATTTGACACTTAATctcagtgcctag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171429897 65 - 171630274 tgtctgatcgccacactaaaat---ataa--ttcaggaaagtttattcagctcttaatcccagggcctag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            256204 65 -    375362 tgtccgatcgccacactaaaat---ataa--ttcaggatagtttattcagctcttaatcccagggcctag
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      254708 65 -    373274 tgtccgatcgccacactaaaat---ataa--ctcaggaaagtttattcagctcttaatcccagggcctag
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      186547 65 -    285216 Cgtctgatcgccacactaaaat---ataa--ttcaggaaagtttattcagctcttaatcccagggcctag
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1560702 61 -   2232465 TGTCTGAGTGCCACATTACAAT---ATAA--TTCAACAAATGTTATTCAATAGTTGAT---AGTACCTA-
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25917741 66 +  26524999 TACCTGACTCTGACATTAGAAT---ATACATTTCAGGACAGCTT-TTCACCACTTAATCCCAGTGCCCAG
i canFam3.chr35            I 1045 C 0
e dasNov3.JH561790             72558 833 -    302817 I
e proCoq1.NW_012147953v1      986407 925 -   3516910 I

a score=250515.000000
s hg38.chr6_GL000254v2_alt    185176 27 +   4827813 aatagtgcctgacacaaagcaaataat
s panTro5.chr6              29172659 27 + 175400573 aatagtgcctgacacaaagcaaataat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29406722 27 + 173848474 aatagtgcctgacacaaagcaaataat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5207345 27 +   6154872 aatagtgcctgacacaaagcaaataat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74206489 27 + 122973662 aatagtgcctgacacaaagcaaataat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29384051 27 + 172585720 aatagtgcctgatacaaagcaaataat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29044911 27 - 170955103 aatagtgcctgatacaaagcaaataat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2035654 27 -   2996164 aatagtgcctgatataaagcaaataat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1897223 27 -   2157725 aatagtgcctgacacaaagcaaataat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28341475 27 -  71996105 aatagtgcctgacacaaagcaaataat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2027863 27 +   2316924 aatagtgcctgacacaaagcaaataat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1907228 27 -   3067355 aatagtgcctgacacaaagcaaataat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171429962 23 - 171630274 aatggtgcctgatacagagcaaa----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            256269 23 -    375362 aatggtgtcccatacagagtaaa----
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      254773 23 -    373274 aatggtgcctgatacagagcaAA----
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      186612 23 -    285216 aatggtgcctgatgcagagcaag----
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      987332 27 -   3516910 AATAGTGCATGACCTAAAGGAAATAAT
i proCoq1.NW_012147953v1   I 925 C 0
s otoGar3.GL873742           1560763  8 -   2232465 -------------------AAAGCAGA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25917807 27 +  26524999 AATACTGCCGGACCCAGAAAAGACAAT
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             72558 833 -    302817 I

a score=11051215.000000
s hg38.chr6_GL000254v2_alt    185203 832 +   4827813 taatac-gcactgaatgagc-aaaCGACAGACAGGCATTAGCTCATTTCCTGTAGTCTTGCCGGGGTAGGTCTGCTGCAGCTTTATCACCTGCTCTACCAAGGTTAAATCACA-GGACTGCTCAGGTAACCTAACCACTCCTGCTCAAGTGCTCATTGTTTT----GTGGC--------TATAGTAA---------------------------TACATtaa----aactacaggatact-ggagtg----agga---------gagtctttgaat------gacatgtggtctaagcccctcattac----t----gaacaaatgaggtcactgaggcccaaaaaggttgagagccttgcctgtaatcagaccacttgtcagtgctgtgtaggcacaagcaccaggtcttctTTTTGCCATTTCTATGAGACAACGCAATTGACTAATTCAAGTTGTGTGAACCAGAACTTCTAGTTTACACAGTTTCCTTCCAAGGTGCACAATATAGAGTTTGGCAAGCTCTTGCTATTCCTGCAGAGTTAAA-----AAGAAGACAGGGGGTCCTGGATACTACTTGGCAAA--GGAGAAGGGACGATATTTTCAGTGGGTGCTGCTCTAGCAGGGC--------TCTGCAAGCCTTACCTGCAGGAGCTCCCTGGTGGGCTGCTGCTGCTTCTCTTCTAGCTGAGCGATCAGGCTGCTGAGGTGGGAGATGTTGCAAGAGAACTGGGTGATGGCACCATTGATGCTATTGTAGATGGCCAAGTCTAGCTCCTCAAGGCGGGCCAGGAGGCGATACTCATGCTCCTTTAAGGAGTGATACAGCTGCTCAAACTCCCAAACAATCTTCTCCCTCTCCATCTGGGTTAGGCTCTATGCAGACGACAGGGAAAGGCAGTAAAGAGAAAAA
s panTro5.chr6              29172686 832 + 175400573 taatac-gcactgaatgagc-aaaCGACAGACAGGCATTAGCTCATTTCCTGTAGTCTTGCCGGGGTAGGTCTGCTGCAGCTTTATCACCTGCTCTACCAAGGTTAAATCACA-GGACTGCTCAGGTAACCTAACCACTCCTGCTCAAGTGCTCATTGTTTT----GTGGC--------TATAGTAA---------------------------TACATtaa----aactacaggatact-ggagcg----agga---------gagtctttgaat------gacatgtggtctaaccccctcattac----t----gaacaaatgaggtcactgaggcccaaaaaggttgacagccttgcctgtaatcagaccacttgtcagtgctgggtaggcacaagcaccaggtcttctTTTTGCCATTTCTATGAGACAACGCAATTGACTAATTCAAGTTGTGTGAACCAGAACTTCTAGTTTACACAGTTTCCTTCCAAGGTGCACAATATAGAGTTTGGCAAGCTCTTGCTATTCCTGCAGAGTTAAA-----AAGAAGACAGGGGGTCCTGGATACTACTTGGCAAA--GGAGAAGGGACGATATTTTCAGTGGGTGCTGCTCTAGCAGGGC--------TCTGCAAGCCTTACCTGCAGGAGCTCCCTGGTGGGCTGCTGCTGCTTCTCTTCTAGCTGAGCGATCAGGCTGCTGAGGTGGGAGATGTTGCAAGAGAACTGGGTGATGGCACCATTGATGCTATTGTAGATGGCCAAGTCTAGCTCCTCAAGGCGGGCCAGGAGGCGATATTCATGCTCCTTTAAGGAGTGATACAGCTGCTCAAACTCCCAAACAATCTTCTCCCTCTCCATCTGGGTTAGGCTCTATGCAGATGACAGGGAAAGGCAGTAAAGAGAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29406749 832 + 173848474 taatac-gcactgaatgagc-aaaCGACAGACAGGCATTAGCTCATTTCCTGTAGTCTTGCCGGGGTAGGTCTGCTGCAGCTTTATCACCTGCTCTACCAAGGTTAAATCACA-GGACTGCTCAGGTAACCTAACCACTCCTGCTCAAGTGCTCATTGTTTT----GTGGC--------TATAGTAA---------------------------TACATtaa----aactacaggatact-ggagcg----agga---------gagtctttgaat------gacatgtggtctaaccccctcattac----t----gaacaaatgaggtcactgaggcccaaaaaggttgagagccttgcctgtaatcagaccacttgtcagtgctgggtaggcacaagcaccaggtcttctTTTTGCCATTTCTATGAGACAACGCAATTGACTAATTCAAGTTGTGTGAACCAGAACTTCTAGTTTACACAGTTTCCTTCCAAGGTGCACAATATAGAGTTTGGCAAGCTCTTGCTATTCCTGCAGAGTTAAA-----AAGAAGACAGGGGGTCCTGGATACTACTTGGCAAA--GGAGAAGGGACAATATTTTCAGTGGGTGCTGCTCTAGCAGGGC--------TCTGCAAGCCTTACCTGCAGGAGCTCCCTGGTGGGCTGCTGCTGCTTCTCTTCTAGCTGAGCGATCAGGCTGCTGAGGTGGGAGATGTTGCAAGAGAACTGGGTGATGGCACCATTGATGCTATTGTAGATGGCCAAGTCTAGCTCCTCAAGGCGGGCCAGGAGGCGATACTCATGCTCCTTTAAGGAGTGATACAGCTGCTCAAACTCCCAAACAATCTTCTCCCTCTCCATCTGGGTTAGGCTCTATGCAGATGACAGGGAAAGGCAGTAAAGAGAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5207372 834 +   6154872 taatac-gcactgaatgagcaaaACGACAGACAGGCATTAACTCATTTCCTGTAGTCTTGCCGGGGTAGGTCTGCTGCAGCTTTATCACCTGCTCTACCAAGGTTAAATCACA-GGACTGCTCAGGTAACCTAACCACTCCTGCTCAAGTGCTCATTGTTTT----GTGGC--------TATAGTAA---------------------------TACATtaa----aactacaggatactgggagtg----agga---------gagtctttgaat------gacatgtggtctaagcccctcatcac----t----gaacaaatgaggtcactgaggcccaaaaaggttgagagccttgcctgtaatcagaccacttgtcagtgctgggtaggcacaagcaccaggtcttctTTTTGCCATTTCTATGAGACAACGCAACTGACTAATTCAAGTTGTGTGAACCAGAACTTCTAGTTTACACAGTTTCCTTCCAAGGTGCACAATATAGAGTTTGGCAAGCTCTTGCTATTCCTGCAGAGTTAAA-----AAGAAGACAGCGGGTCCTGGATACTACTTGGCAAA--GGAGAAGGGACGATATTTTCAGTGGGTGCTGCTCTAGCAGGGC--------TCTGCAAGCCTTACCTGCAGGAGCTCCCTGGTGGGCTGCTGCTGCTTCTCTTCTAGCTGAGCGATCAGGCTGCTGAGGTGGGAGATGTTGCAAGAGAACTGGGTGATGGCACCATTGATGCTATTGTAGATGGCCAAGTCTAGCTCCTCAAGGCGGGCCAGGAGGCGATACTCATGCTCCTTTAAGGAGTGATACAGCTGCTCAAACTCCCAAACAATCTTCTCCCTCTCCATCTGGGTTAGGCTCTATGCAGATGACAGGGAAAGGCAGTAAAGAGAAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74206516 830 + 122973662 taatat-gcactgaatgggc-aaatGACAGACAGGCATTAGCTCATTTCCTGTAGTCTTGCTGGGGTAGGTCTGCTGCAGCTTTATCACCTGCTCTACCAAGGTTAAATCACA-GGACTGCTCAGTTAACCTAACCACTCCTGCTCAAGCGTTCATTGTTTT----GTGAC--------TATAGTAA---------------------------TACGTtaa----aactacaagatact-ggagtg----agga---------gactcttcgaat------gacatgtggtctaagcccctcattat----t----gaacaaacgaggtcactgaggcccaaaaaggttgaaagccttgcttgtaatcagaccacttgtcagtgctgggcaggcacaagcaccaggtcttctTTTTGCCATTTCCATGAGACAATGCAATTGACTAATTCAAGTTGTGTGCACCAGAACTTCTAGTTT--ACAGTTTCCTTCTAAGGTGCACAATATAGAGTTTGGCAAGCTCTTATAATTCCTGCAGAGCTAAA-----AAGAAGACAGGGGGTCCTGGATACTACTTGGCAAA--GGAGAAGGGAGGATATTTTCAGTGGGTGCTGCTCTGGCAGGGC--------TCTGCAAGCCTTACCTGCAGGAGCTCCCTGGTGGGCTGCTGCTGCTTCTCTTCTAGCTGAGCGATCAGGCTGCTGAGGTGGGAGATGTTGCAAGAGAACTGGGTGATGGCACCATTGATGCTATTGTAGATGGCCAAGTCTAGCTCCTCAAGGCGGGCCAGGAGGCGATACTCATGCTCCTTTAAGGAGTGATACAGCTGCTCAAACTCCCAAACAATCTTCTCCCTCTCCATCTGGGTTAGGCTCTATGCAGATGACAGGGAAAGGCAGTAAAGAGAAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29384078 829 + 172585720 taatat-gcactgaatgagc-aaaCGACAGACAGGCATTAGCTCATTTCCTGTAGTCTTGCTGGGGTAGGTCTGCTGCAGCTTTATCACCTGCTCTACCAACATTAAACCACA-GGACTGCTCAGTTAACCTAACCACTCCTGCTCAAGTGCTCATTGTTTT----GTGGC--------TGTAGTAA---------------------------TATGTtaa----aactataagatact-ggagtg----agga---------gggtctttgaat------gacatattgtctaagcccctcattat----t----gaacaaataaggtcactgaggcccaaaaaggtagacagccttgcctgtaatcagaccacttgtcagtgctgggcaggcccaagcaccaggtcttctTTTTGCCATTTCCATGAGACAATGCAATTGACTAATTCAAGTTGTGTGAACCAGAACTTCTAGTTTACATAGTTTCCTTCCAAGGTGCACCATATAGAGTTTGGCAAGCTCTTGCTATTCCTGCAGAGTTAAA--------AAGACAGGGGGTCCTGGATACTACTAGGCAAA--GGAGAAGGGAGGGTATTTTCAGTGGGTGCTGCTCTGGCAGGGC--------TCTGCAAGCCTTACCTGCAGGAGCTCCCTGGTGGGCTGCTGCTGCTTCTCTTCTAGCTGAGCGATCAGGCTGCTGAGGTGGGAGATGTTGCAAGAGAACTGGGTGATGGCACCATTGATGCTATTGTAGATGGCCAAGTCTAGCTCCTCAAGACGGGCCAGGAGGCGATACTCATGCTCCTTTAAGGAGTGATACAGCTGCTCAAACTCCCAAACAATCTTCTCCCTCTCCATCTGGGTTAGGCTCTATGCAGATGACAGGGAAAGGCAGTAAAGAGAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29044938 829 - 170955103 taatat-gcactgaatgagc-aaaCGACAGACAGGCATTAGCTCATTTCCTGTAGTCTTGCTGGGGTAGGTCTGCTGCAGCTTTATCACCTGCTCTACCAACATTAAACCACA-GGACTGCTCAGTTAACCTAACCACTCCTGCTCAAGTGCTCATTGTTTT----GTGGC--------TGTAGTAA---------------------------TATGTtaa----aactataagatact-ggagtg----agga---------gggtctttgaat------gacatattgtctaagcccctcattat----t----gaacaaataaggtcactgaggcccaaaaaggtagacagccttgcctgtaatcagaccacttgtcagtgctgggcaggcccaagcaccaggtcttctTTTTGCCATTTCCATGAGACAATGCAATTGACTAATTCAAGTTGTGTGAACCAGAACTTCTAGTTTACATAGTTTCCTTCCAAGGTGCACCATATAGAGTTTGGCAAGCTCTTGCTATTCCTGCAGAGTTAAA--------AAGACAGGGGGTCCTGGATACTACTAGGCAAA--GGAGAAGGGAGGGTATTTTCAGTGGGTGCTGCTCTGGCAGGGC--------TCTGCAAGCCTTACCTGCAGGAGCTCCCTGGTGGGCTGCTGCTGCTTCTCTTCTAGCTGAGCGATCAGGCTGCTGAGGTGGGAGATGTTGCAAGAGAACTGGGTGATGGCACCATTGATGCTATTGTAGATGGCCAAGTCTAGCTCCTCAAGACGGGCCAGGAGGCGATACTCATGCTCCTTTAAGGAGTGATACAGCTGCTCAAACTCCCAAACAATCTTCTCCCTCTCCATCTGGGTTAGGCTCTATGCAGATGACAGGGAAAGGCAGTAAAGAGAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2035681 829 -   2996164 taatat-gcactgaatgagc-aaaCGGCAGACAGGCATTAGCTCATTTCCTGTAGTCTTGCTGGGGTAGGTCTGCTGCAGCTTTATCACCTGCTCTACCAACATTAAACCACA-GGACTGCTCAGTTAACCTAACCACTCCTGCTCAAGTGCTCATTGTTTT----GTGGC--------TGTAGTAG---------------------------TATGTtaa----aactataagatact-ggagtg----agga---------aggtctttgaat------gacatattgtctaagcccctcattat----t----gaacaaataaggtcactgaggcccaaaaaggtagacagccttgcctgtaatcagaccacttgtcagtgctgggcaggcccaagcaccaggtcttctTTTTGCCATTTCCATGAGACAATGCAATTGACTAATTCAAGTTGTGTGAACCAGAACTTCTAGTTTACATAGTTTCCTTCCAAGGTGCACCATATAGAGTTTGGCAAGCTCTTGCTATTCCTGCAGAGTTAAA--------AAGACAGGGGGTCCTGGATACTACTAGGCAAA--GGAGAAGGGAGGGTATTTTCAGTGGGTGCTGCTCTGGCAGGGC--------TCTGCAAGCCTTACCTGCAGGAGCTCCCTGGTGGGCTGCTGCTGCTTCTCTTCTAGCTGAGCGATCAGGCTGCTGAGGTGGGAGATGTTGCAAGAGAACTGGGTGATGGCACCATTGATGCTATTGTAGATGGCCAAGTCTAGCTCCTCAAGACGGGCCAGGAGGCGATACTCATGCTCCTTTAAGGAGTGATACAGCTGCTCAAACTCCCAAACAATCTTCTCCCTCTCCATCTGGGTTAGGCTCTATGCAGATGACAGGGAAAGGCAGTAAAGAGAAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1897250 829 -   2157725 taatat-gcactgaatgagc-aaaCAACAGACAGGCATTAGCTCATTTCCTGTAGTCTTGCTGGGGTAGGTCTGCTGCAGCTTTATCACCTGCTCTACCAACATTAAACCACA-GGACTGCTCAGTTAACCTAACCACTCCTGCTTAAGCGCTCATTGTTTT----GCGGC--------TGTAGTAA---------------------------TATGTtaa----aactataagatact-ggagtg----agga---------gggtctttgaat------gacatattgtctaagcccctcattac----t----gaacaaataacgtcactgaggcccaaaaacgtagagagccttgcctgtaatcagaccacttgtcagtgctgggcaggcccaagcaccaggtcttctTTTTGCCATTTCCATGAGACAATGCAATTGACTAATTCAAGTTGTGTGAACCAGAACTTCTAGTTTACATAGTTTCCTTCCAAGGTGCACAATATAGAGTTTGGCAGGCTCTTGCTATTCCTGCAGAGTTAAA--------AAGACAGGGGGTCCTGGATACTACTTGGCAAA--GGAGAAGGGAGGGTATTTTCAGTGGGTGCTGCTCTGGCAGGGC--------TCTGCAAGCCTTACCTGCAGGAGCTCCCTGGTGGGCTGCTGCTGCTTTTCTTCTAGCTGAGCGATCAGGCTGCTGAGGTGGGAGATGTTGCAAGAGAACTGGGTGATGGCACCATTGATGCTATTGTAGATGGCCAAGTCTAGCTCCTCAAGACGGGCCAGGAGGCGATACTCATGCTCCTTTAAGGAGTGATACAGCTGCTCAAACTCCCAAACAATCTTCTCCCTCTCCATCTGGGTTAGGCTCTATGCAGATGACAGGGAAAGGCAGTAAAGAGAAAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28341502 829 -  71996105 taatat-gcactgaatgagc-aaaCGACAGACAGGCATTAGCTCATTTCCTGTAGTCTTGCTGGGGTAGGTGTGCTGCAGCTTTATCACCTGCTCTACCAACATTAAACCACA-GAACTGCTCAGTTAACCTAACCACTCCTGCTCAAGTGCTCATTGTTTT----GTGGC--------TGTAGTAA---------------------------TATGTtaa----aactataagatact-ggagtg----agga---------gagtctttgaat------gacgtattgtctaagcccctcattat----t----gaacaaataaggtcactgaggcccaaaaaggtagagagccttgcctgtaatcagaccacttgtcagtgctgggcaggcccaagcaccaggtcttctTTTTGCCGTTTCCATGAGACAATGCAATTGACTAATTCAAGTTGTGTGAACCAGAACTTCTAGTTTACATAGTTTCCTTCCAAGGTGCACAATATAGAGTTTGGCAAGCTCTTGCTATTCCTGCAGAGTTAAA--------AAGACAGGGGGTCCTGGCTACTACTTGGCAAA--GGAGAAGGGAGGGTATTTTCAGTGGGTGCTGCTCTGGCAGGGC--------TCTGCAAGCCTTACCTGCAGGAGCTCCCTGGTGGGCTGCTGCTGCTTCTCTTCTAGCTGAGCGATCAGGCTGCTGAGGTGGGAGATGTTGCAAGAGAACTGGGTGATGGCACCATTGATGCTATTGTAGATGGCCAAGTCTAGCTCCTCAAGACGGGCCAGGAGGCGATATTCATGCTCCTTTAAGGAGTGATACAGCTGCTCAAACTCCCAAACAATCTTCTCCCTCTCCATCTGGGTTAGGCTCTATGCAGATGACAGGGAAAGGCAGTAAAGAGAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2027890 829 +   2316924 taatat-gcactgaatgagc-aaaCAACAGACAGGCATTAGCTCATTTCCTGTAGTCTTGCTGGGGTAGGTCTGCTGCAGCTTTATCATCTGCTCTACCAACATTAAACCACA-GGACTGCTCAGTTAACCTAACCACTCCTGCTTAAGCGCTCATTGTTTT----GTGGC--------TGTAGTAA---------------------------TATGTtaa----aactataagatact-ggagtg----agga---------gggtctttgaat------gacatattgtctaagtccctcattat----t----gaacaaataaggtcactgaggcccaaaaacgtagagagccttgcctgtaatcagaccacttgtcagtgctgggcaggcccaagcaccaggtcttctTTTTGCCATTTCCATGAGACAATGCAATTGACTAATTCAAGTTGTGTGAACCAGAACTTCTAGTTTACATAGTTTCCTTCCAAGGTGCACAATATAGAGTTTGGCAAGCTCTTGCTATTCCTGCAGAGTTAAA--------AAGACAGGGGGTCCTGGATACTACTTGGCAAA--GGAGAAGGGAGGGTATTTTCAGTGGGTGCTGCTCTGGCAGGGC--------TCTGCAAGCCTTACCTGCAGGAGCTCCCTGGTGGGCTGCTGCTGCTTCTCTTCTAGCTGAGCGATCAGGCTGCTGAGGTGGGAGATGTTGCAAGAGAACTGGGTGATGGCACCATTGATGCTATTGTAGATGGCCAAGTCTAGCTCCTCAAGACGGGCCAGGAGGCGATACTCATGCTCCTTTAAGGAGTGATACAGCTGCTCAAACTCCCAAACAATCTTCTCCCTCTCCATCTGGGTTAGGCTCTATGCAGATGACAAGGAAAGGCAGTAAAGAGAAAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1907255 829 -   3067355 taatat-gcactgaatgagc-aaaCGACAGACAGGCATTAGCTCACTTCCTGTAGTCTTGCTGGGGTAGGTCTGCTGCAGCTTTATCACCTGCTCTACCAACATTAAACCACA-GGACTGCTCAGTTAACCTAACCACTCCTGCTCAAGTGCTCATTGTTTC----ATGGC--------TGTAGTAA---------------------------TATGTtaa----aactataagatact-ggagtg----agga---------gagtctttgaat------gacacattgtctaagcccctcattat----t----gaacaaataaggtcactgaggcccaaaaaggtagagagccttgcctgtaatcagaccacttgtcagtgctgggcaggcccaagcaccaggtcttctTTTTGCCATTTCCATGAGACAATGGAATTGACTAATTCAAGTTGTGTGAACCAGAACTTCTAGTTTACATAGTTTCCTTCCAAGGTGCACAATATAGAGTTTGGCAAGCTCTTGCTATTCCTGCAGAGTTAAA--------AAGACAGGGGGTCCTGGATACTACTTGGCAAA--GGAGAAGGGAGGATATTTTCAGTGGGTGCTGCTCTGGCAGGGC--------TCTGCAAGCCTTACCTGCAGGAGCTCCCTGGTGGGCTGCTGCTGCTTCTCTTCTAGCTGAGCGATCAGGCTGCTGAGGTGGGAGATGTTGCAAGAGAACTGGGTGATGGCACCATTGATGCTATTGTAGATGGCCAAGTCTAGCTCCTCAAGACGGGCCAGGAGGCGATACTCATGCTCCTTTAAGGAGTGATACAGCTGCTCAAACTCCCAAACAATCTTCTCCCTCTCCATCTGGGTTAGGCTCTATGCAGATGACAGGGAAAGGCAGTAAAGAGAGAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171429985 830 - 171630274 taatat-gcacagaatgagc-aaaCGACAGACAAGCCTTAGCTTGTTCCCTGTGGCTTTGCTGGGGTAGGTCTG-TGCAGCTTCATCACCAGCTCT-CCAGGGTTAGACCACA-AGACCCCTCAGCGAACCTAACCACTCCTGCTCAGGTGCTCACTCCTGCTCAGGTGGC--------CACAGTCA---------------------------TATGTtaa----aactacaagatact-ggagtg----aaga---------gagtgtttgaat------gacatatgatctaagcccctcattgt----t-----aacacatgaggtcactgaggcccaaaaaggtggagagccttgcctgtgatcagaccacttgtcagtgctaagcaggcccaagcaccagg---tcttttTGCCATTCTCAGGAGACAACGCAATTGACTAATCCACGTTGTGCCAACCAGAACTTCTAGTTTACATAGTTTCCTTCCGGGGTGCACAATGCAGAGTGTGGCAAACTCTTGCTATTCCCG-AGAGCTAAT-----AGGAAGACAGGGGATCCTGGATACTACTTGGCAAA-GGAAGAAGGGAGGCTACTTTCAGTGGATGCTGCTCTGGCAGAGC--------TCCGTAAGCCTTACCTGCAGGAGCTCCCTGGTGGGCTGCTGCTGCTTCTCTTCCAGCTGAGCGATCAGGCCACTGAGGTGGGAGATGTTGCAGGAGAACTGGGTGATGGCACCATTAATGCTATTGTAGATGGCCAAGTCCAGCTCCTCAAGGCGGGCCAGGAGGCGATACTCGTGCTCCTTTAAGGAGTGATACAGTTGCTCAAACTCCCAAACAATCTTCTCCCTTTCCATCTGGGTTAGGCTCTGTGCAGACCACAGGAAAAGGCAGTAAAGAGAAACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            256292 823 -    375362 taatat-gcacggaatgagc-gaaCGACAGACAAGCGTTAGCTCATTCCGTGTGGCTTTGCTGGGGTCAGTCTG-TGCAGCTTCATCAGCAGCTCT-CCAGGGTTACACCACA-GGACCTCTCAGTGACCCCAACCACTCCTGCTCAGGTGCTCACTGTTTT----GTGGC--------CATAGTCA---------------------------TATGTTAA----AACTACAAGACACT-CGAGTG----AAGA---------GAG----TGAAT------GAcatgtggtctaagcccgtcgttat----t-----aacac--gaggtcactgaggcccaatgaggtggagagccttgcctgtaatcagaccacctgtcagtgctgagcaggcccaagtaccaggtcttctTTTTGCCATTCTCTTGAGACAATGCAATTGACTAATCCAAGCTGTGCCAACCAGAACTTCTAGCGTACATAGTTTCCTTCCACAGTGCACAATGCAGAGTGTGGCAAACTCTTGCTATTCCTG-AGAGTTAAC-----ACGAAGACAGGGCATCCTGGATACTACTTGGCAAA-GGAAGAAGGGAGGCTAATTTCAGTGGACACTGCTCTGGCAGAGC--------TCGGTAACCCTTACCTGCAGGAGTTCCCTGGTGGGCTGCTGCTGCTTCTCTTCCAGCTGAGCGATCAGGCCACTGAGGTGGGAGATGTTGCAGGAGAACTGGGTGATGGCACCATTGATGCTATTGTAGATGGCCAAGTCCAGCTCCTCAAGGCGGGCCAGGAGGCGATACTCATGCTCCTTTAAGGAGTGATACAGCTGCTCAAACTCCCAAACAATCTTCTCCCTTTCCATCTGGGTTAGGCTCTGTGCAGACGACAGGAAAAGGCAGTAAAGAGAAAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      254796 822 -    373274 TAATAT-GCACGGAACGAGC-AAACG-CAGACAAGCATTGGCTCATTCCCTGTGGCTTTGCTGG----AGTCTG-TGCAGCTTCATCACCAGCTCT-CCAGGGTTAGACCACA-AGACCTCTCAGCGAACATAACCACTCCTGCTCAGGTGCTCACTGTTTT----GGGG---------CATAGTCA---------------------------TATGTTAA----AACTACAAGATACT-GGAGTG----AAGA---------CAGTGTTTGAAT------GAcatgtggtctaagcccctcgttat----t-----aacacatgaggtcactgaggcccaaaaaggtagagagccttgcctgtgatcagaccacctgtcagtgctgagcaggcccaagcaccaggtcttctTTTTGCCATTCTCTTGAGACAATGCAATTGACTAATGCAAGTTGTGCCAACCAGAACTTCTAGTTTACATAGTTTCCTTCCACAGTGCACAATGCAGAGTGTGGCAAACTCTTGCTATTCCTG-AGAATTAAC-----ATGAAGACAGGGCATCCTGGATACTACTTGGCAAA--GAAGAAGGGAGGCTACTTTCAGTGGACGCTGCTCTGGCAGAGC--------TCTGTAAGCCTTACCTGCAGGAGCTCCCTGGTGGGCTGCTGCTGCTTCTCTTCCAGCTGAGCGATGAGGCCACTGAGGTGGGAGATGTTGCAGGAGAACTGGGTGATGGCACCGTTGATGCTATTGTAGATGGCCAAGTCCAGCTCCTCAAGGCGGGCCAGGAGGCGATACTCATGCTCCTTTAAGGAGTGATACAGCTGCTCAAACTCCCAAACAATCTTCTCCCTTTCCATCTGGGTTAGGCTCTGTGCAGACGACAGGAAAAAGCAGTAAAGAGAAAAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      186635 792 -    285216 taatat-gcacggaatgagc-gaaCGACAGCCGAGCATTAGCTCGTTCCCTGTGGCTTTGCTGGGGCAGGTCTG-TGCAGCTTCATCACCAGCTCT-CCA-GGTTAGAGCACA-GGACCGCTCAGTGAACCTAACCACTCCTGCTCAGGCGCTCACTGTTTT----GTGGC--------CATAGTCC---------------------------TATGTtaa----aactataagatacc-ggagtg----aaga---------gagtgtttgaat------gacatgtggtctaagcccctcgttat----t-----aacccatgaggtcactgaggcccagaaacgtggagagccttgcctgtgatccgaccacttgtcagtgctgagcaggcccaagcaccaggtcttctTTTTGCCATTGTCATGAGACAACGCAAT--------------TGTGCCAACCAGAACTTCTAGTTTAC--AGTTTCCTTCCACGGTGCACCATGCAGAGTGTGGCAAAGTCTTGCTATT--------------------------CAGGGGATCCTGTATACTACTTGGCAGA-GGAAGAAGGGAGGCTATGCTCAGCAGATGCAGCTCTGGCAGAGC--------TCTGTAAGCCTTACCTGCAGGAGTTCCCTGGTGGGCTGCTGCTGCTTCTCTTCCAGCTGAGCGATCAGGCCACTGAGGTGGGAGATGTTGCAGGAGAACTGGGTGATGGCACCATTGATGCTATTGTAGATGGCCAAGTCCAGCTCCTCAAGGCGGGCTAGGAGGCGATACTCATGCTCCTTTAAGGAGTGATACAGCTGCTCAAACTCCCAAACAATCTTCTCCCTTTCCATCTGGGTAAGGCTCTGTGCAGACGACAGGAAAAGGCAGTAAAGAGAAAAA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      987359 838 -   3516910 TAATAT-GTGCTGAAAGAAC-AAATGACAGGCAGGCATTAGCTCATTTCCTGTGGTCCTGCTGGGTTAGGTCTGCTGCAGCTATATCACCTCCATTACCAAGGTTAAATCACA-GGACTGCTCAGA----CTAACCACTCCTGCTCAAGTGCTTACTGTTTT----GTGGC--------TGTGGTAAAGCATA-----------------TGTGTATGTtaa----agttacaggatact-ggaatg----agga---------gggtctttgaat------gacatgtggtct-agcccctcgtttca---t----gagcaaatgaagtcactgaggcccacagagatcaagagcctcacctgtgatcagatcacttgtcagtgcatggcaggcttgggcatcaggtctcctctttgccctttccatgaaacaatgcAACTGACTGATCCAAGCTGTGTCAACAAGAAGTTCTAATGTACAT--TTTCCTTCCAACATGCCCAACACAGAGTTTAGCAAGCCCTTGCCACTCTTGCAGAGTTAGC-----AAGAAGACAGGAGGTCCTGGATACTACTTGGCAAAAAGGAGAAGAAAGACTACTTTTAGTGGGAGCTACCTTGGCAGAGT--------TCTCCAAGCCTTACCTGCAGAAGCTCCCTGGTAGGCTGCTGCTGCTTCTCTTCCAGCTGGGCGATCAGGCTGCTGAGGTGGGAGATGTTACAGGAGAACTGGGTGATGGCACCATTGATGCTGTTGTAGATGGCCAAGTCTAGCTCCTCAAGGCGGGCCAAGAGACGATACTCATGCTCCTTCAAGGAGTGATACAGCTGCTCAAACTCCCAAACTATCTTCTCCCTCTCCATCTGGGTCAGGCTCTATATAGATGACAGGGAAGAGCAGTGAAGAGAGAAA
i proCoq1.NW_012147953v1   C 0 I 864
s otoGar3.GL873742           1560771 825 -   2232465 CAATAC-GTGCTGAATGAAT-AA---ACAGACAGGCATTAGCTTGTTTCCTGTGGTTCTGCTGGAAGAAAT---CTACAGCT-TATCACCTCCACTTCCAAGATTAAATAACA-GGACTCATTGGG----CTAGCCATTCCTGCTCAAGTGCTTATTGCTTT----CTGGCATAATTCTGGTGGTAAGAATTA-----------------TATATGTGTtaa----atttataggataca-ggaatg----agga---------gcatctttgagt------gacatgtggtcc-agcccttcatttca---t----gagcaaatgaggtcactgaggcccaaagag-tcaagagcctcccccgtgatcagaccatttgtcagtgcagggaaggcctggacatcagttct---------tctttcccTGAAAC-ATGCAACTGACTGGTCCAAGCTGTGTCAATAAGAACTTCTAGTGTACAT--TTTCCTTCCAACATGTCTA--ACAGAGTTTGGAAAGCCCTTACCTTGCTTACATAGTTAGA-----AAGAAGACAGGGGGTCCTAGATACTACTTGGCAAAAAGGAGAAGAAAAACTA-TTTTAGTGGAGGCTATCTTGACAGAGT--------TCTCTAAACCTTACCTGTAAGAGCTCCCTGGTAGGCTGCTGCTGCTTCTCTTCCAGCTGGCTGATCAGGCTGCTGAGGTGGGAGATGTTGCAGGAGAATTGAGTGATGGCACCATTGATGCTGTTGTAGATGGCCAAGTCCAGCTCCTCCAGGCGAGCCAGGAGACGATACTCATGCTCCTTCAAGGAGTGATATAGCTGCTCAAACTCCCAAACTATCTTCTCCCTTTCCATCTGGGTCAGGCTCTATATAGATGACAGGGAAGAACAATGAAGAGAAAAA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25917834 827 +  26524999 TCATAT-GCACTCAATGAAC-AA---------------CAGCACATTTCCTGTGGCCTTGCCAGGTTAGGTCAA-TGCAGCTTTGTAA----CTACACCCAGCTTAAATCACAGGGACCGCTTGGG----CCAACCA--CCTGCTCCAGTGCTCA--GTTTT----GTGGC--------TGTGCTAATGTACA-----------------CATATATGTTAA----AATTACAGGACATT-TCACTG----AGTATCTTTACTCAAATctttaaat------ggcatgtaggctgaacctcccattac----accaggagtagatcaggtcactgaggcccagagaggtcaagag-------tgtgatcagaccacgtgtgggtacaggacaggcctaggcattaggtcttcCTCTTGCCCTTCCCGTGAGACAATGCAACTGACCGATCCAAGTTGTGTCAACTGGAACTTCTGTTATGCATGTTTTCTCTCTGACAAGCCCAG---AGAGCTGAGCTAGGGCTTGTTACTCCT--AGAGTTGACCGGGGCGGGGAGGGGGAGGTGCTCCATACTGCCTAGCAAA-GAGGGAAGGGAGACT--TTTTGGCAGGAGCCACGTTGGTGGGACACTCCACACCTCCATGCCTTACCTGCAGGAGCTCCCTGGTGGGCTGCTGCTGCTTCTCTTCTAGCTGGGCAATCAGGCTACTCAAGTGGGAGATGTTGCAGGAGAACTGGGTGATGGCACCGTTGATGCTGTTGTAGATGGCCAAGTCTAGCTCCTCAAGGCGGGCCAGGAGGCGATACTCATGTTCCTTCAAGGAGTGATAGAGCTGCTCAAACTCCCAGACAATCTTCTCCCTCTCCATCTGGGTCAGGCTCTGCGTAGATGACAGGGGAGGGTACTGAAGGACAGA-
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             73391 780 -    302817 taatacagcgttgaacgaat-aaatGACAGCA------CAGCCCAT---CTGGAGCCTTGCTGGGCCAGGGGCC-TGCGGCTCTATCACCTGTGCTACCCAGGATACATCACA-GGACCGCCCCGTTGACCT-----TCCCCGCGTACGCGCCTGCGGTTTT----GTGGG--------TGCGTCACCACCCAGCACAGAACCAGATAACTAGCTGGGTTAGCGTTAGCTGTTAGTCAAC-GGGCTTCTGCAAGC---------AAATGTTCAAGTCACAGGGCCATGTGATTCAGATCCTGCGTTACACAGT----CAGCACATGCCACCAGC-AGGCCCACAGCG---------CCTGGCCATGCTCGGCCCACTGGTCAGTGCCCGGCAGGCCCGGGCATCAGGTCT-CTAACTGCCCTTTCCAGGAGCCACTGCAATTGACTGAACCAACTCGTATCAAGGGGAGCTTCCAGTGCACATGTCT------------GCCCGATACGGCGCTGGGCAAGCCCTGGCCGCTCCGGCAGAGCGATC-----------------AGCCCGGGA--------GGCAGA-----------------------------------------GGGC--------TCC-CAAGCCTCACCTGCAGGAGCTCCCGGGTGGGCTGCTGCTGCTTCTCCTCCAGCTGGGCGATCAGGCCACTGAGGTGGGAGATGTTACAGGAGAACTGAGTGATGGCGCCGCTGATGCTGTTGTAGATGGCCAAGTCCAGCTCCTCCAGGCGGGCCAGGAGGCGATACTCGTGCTCCTTCAGGGAGTGATACAGCTGCTCAAACTCCCAAACGATCTTCTCCCTCTCCATCTGGGTCAGGCTCTGGGTGGGCGATAGAGAAGGGCGGTGAGGAGGGCAG
i dasNov3.JH561790         I 833 C 0

a score=914277.000000
s hg38.chr6_GL000254v2_alt    186035 105 +   4827813 CGGCTCATTTCTAGGG-CCTTCATAGTTCTCCTGTGACCATGTA---------GCCCAAGAC-----CTCATTAT------------GGATTA---AAACAAG----------------------------------------------------------------------------CACAG---TGCTAACTCATTAT---T----TCCAGTCTTTAC
s panTro5.chr6              29173518 105 + 175400573 CGGCTCATTTCTAGGG-CCTTCATAGTTCTCCTGTGACCATGTA---------CCCCAAGAC-----CTCATTAT------------GGATTA---AAACAAG----------------------------------------------------------------------------CACAG---TGCTAACTCATTAT---T----TCCAGTCTTTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29407581 105 + 173848474 CGGCTCATTTCTAGGG-CCTTCATAGTTCTCCTGTGACCATGTA---------CCCCAAGAC-----CTCATTAT------------GGATTA---AAACAAG----------------------------------------------------------------------------CACAG---TGCTAACTCATTAT---T----TCCAGTCTTTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5208206 105 +   6154872 CGGCTCATTTCTAGGG-CCTTCATAGTTCTCCTGTGACCATGTA---------CCCCAAGAC-----CTCATTAT------------GGATTA---AAACAAG----------------------------------------------------------------------------CACAG---TGCTAACTCATTAT---T----TCCAGTCTTTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74207346 113 + 122973662 TGGCTCATTTCTAGGG-CCTTCATAGTTCTCCCGTGACCACGTACCCCAAGACCCCCAAGAC-----CTCACTAT------------GGA-TA---AAACAAG----------------------------------------------------------------------------CACAG---TGCTAACTCATTAT---T----TCCAGTCTTAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29384907 104 + 172585720 TGGCTCATTTCTAGGG-CCTTCATAGTTCTCCCGTGACCACCTA---------CCCCAAGAC-----CTCATTAT------------GGA-TA---AAACAAG----------------------------------------------------------------------------CGAAG---TGCCAACTCATTAT---T----TCCAGTCTTTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29045767 104 - 170955103 TGGCTCATTTCTAGGG-CCTTCATAGTTCTCCCGTGACCACCTA---------CCCCAAGAG-----CTCATTAT------------GGA-TA---AAACAAG----------------------------------------------------------------------------CGAAG---TGCCAACTCATTAT---T----TCCAGTCTTTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2036510 104 -   2996164 TGGCTCATTTCTAGGG-CCTTCATAGTTCTCCCGTGACCACCTA---------CCCCAAGAC-----CTCATTAT------------GGA-TA---AAACAAG----------------------------------------------------------------------------CGAAG---TGCCAACTCATTAT---T----TCCAGTCTTTAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1898079 104 -   2157725 TGGCTCATTTCTAGGG-CCTTCATAGTTCTCCCGTGACCACCTA---------CCCCAAGAC-----CTCATTAT------------GGA-TA---AAACAAG----------------------------------------------------------------------------CAAAG---TGCCAACTCATTAT---T----TCCAGTCTTTAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28342331 104 -  71996105 TGGCTCATTTCTAGGG-CCTTCATAGTTCTCCCGTGACCACCTA---------CCCCAAGAC-----CTCATTAT------------GGA-TA---AAACAAG----------------------------------------------------------------------------CAAAG---TGCCAACTCATTAT---T----TCCAGTCTTTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2028719 104 +   2316924 TGGCTCATTTCTAGGG-CCTTCATAGTTCTCCCGTGACCACCTA---------CCCCAAGAC-----CTCATTAT------------GGA-TA---AAACAAG----------------------------------------------------------------------------CAAAG---TGCCAACTCATTAT---T----TCCAGTCTTTAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1908084 104 -   3067355 TGGCTCATTTCTAGGG-CCTTCATAGTTCTCCCGTGACCACCTA---------CCCCAAGAC-----CTCATTAT------------GCA-TA---AAACAAG----------------------------------------------------------------------------CAAAG---TGCCAACTCATTAT---T----TCCAGTCTTTAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171430815 170 - 171630274 TGGCTCATTTCTGGGG-CCTTCACATTTCTCCCCTGGTCGCCCA---------CCCCAAGAC-----CTCATCAT------------GGA-TG---AAACAAGCACAGTGTACCTGAATTGAAC----------CTTAGAAAGACTGaaacaaacaaacaaacaaacaaaAGAAACAAGCACAG---TGCTAACTCATTCT---T----GCCACTCTTTAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            257115 171 -    375362 TGGCTCATTTCTAGGG-CCTTCACATTTCTCCGCTGGCCACCTA---------CCGCAAGAC-----CTCATCAC------------GGA-TG---AAACAAGCACAATGCACTTGAATTAAACCTTAGAATGACTGA---------aaacaaacaaacaaacaaacaaacaaaAGAAGCACAG---AGCTAACTCATTCT---T----GCCAGTCTTTAC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      255618 165 -    373274 TGGCTCATTTCTAGGG-CCTTCAAATTTCTCCCCTGGCCACCTA---------CTGCAAGAC-----CTCATCAT------------GGA-TG---AAACAAG--CGGTGTACCTGAAATGAACCTTAGAAAGACTGA-------------AAACAAACAAACAAACAAAAGAAAGAAGCACAG---TGCTAACTCATTCT---T----GCCTGTCTTTAC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      187427 170 -    285216 TGGCTTATTCCCAGGG-CCTTCACATTTCTCCCCTGGCCACCCA---------CCCCAAGAC-----CTCATCAT------------GGA-TG---AAACAAGCACAGTGTACCTGAGTTGAACCTCAGAAAGACTGa---------aaa-aaacaaacaaacaaacaaaagaaacaagcaCAG---TGCTAactcattct---g----gccagtctttac
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1561596 119 -   2232465 -GTATCACTTCTAATGCCCTTCACATTTCTCCCCTAACTATCTG---------CCCCCAGAC-----TTCATCATTTTATCT---GAGGA-TACAGAAACAAG----------------------------------------------------------------------------ACCAGGTACACTCACTTATTAT---T----TCCAGTCTTTGC
i otoGar3.GL873742         C 0 I 1155
s canFam3.chr35             25918661 119 +  26524999 AGGCTCCCTTCTAGAGCCCTTCATGTCTGTCCC-TGACTACCTA---------CCCTGAGAC-----CTCATCATCTTGTCCCGGCATGC-TA---AAACAAG----------------------------------------------------------------------------CATCC---TGTTCATTCACTCCTGGT----CTCAGGCTTTAC
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             74171 106 -    302817 AGGCGCACTTCCCAAG-TCG-----------CCCCGACCGCCCA---------ACTCCAGGTACTGGTTCATCCC-----------AGGA-CATGCACGCGAG----------------------------------------------------------------------------CACCC---TGCTCCCTCGCTCG---TCTGCTCCAGTCttgat
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      988197 864 -   3516910 I

a score=320090.000000
s hg38.chr6_GL000254v2_alt    186140 30 +   4827813 TGACTGGATATATAATGCCCAGGAACTGAA
s panTro5.chr6              29173623 30 + 175400573 TGACTGGATATATAATGCCCAGGAACTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29407686 30 + 173848474 TGACTGGATATATAATGCCCAGGAACTGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5208311 30 +   6154872 TGACTGGATATATAATGCCCAGGAACTGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74207459 30 + 122973662 TGACTGGATATATAATGCCCAGGAACTGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29385011 30 + 172585720 TGACTGCATATATAATGGCCAGGAACTGAA
i rheMac8.chr4             C 0 I 327
s macFas5.chr4              29045871 30 - 170955103 TGACTGCATATATAATGGCCAGGAACTGAA
i macFas5.chr4             C 0 I 327
s macNem1.NW_012011356v1     2036614 30 -   2996164 TGACTGCATATATAATGGCCAGGAACTGAA
i macNem1.NW_012011356v1   C 0 I 321
s cerAty1.NW_012001495v1     1898183 30 -   2157725 TGACTGCATATATAATGGCTAGGAACTGAA
i cerAty1.NW_012001495v1   C 0 I 318
s chlSab2.chr17             28342435 30 -  71996105 TGACTGCACATATAATGGCCAGGAACTGAA
i chlSab2.chr17            C 0 I 323
s manLeu1.NW_012104165v1     2028823 30 +   2316924 TGACTGCATATATAATGGCCAGGAACTGAA
i manLeu1.NW_012104165v1   C 0 I 330
s colAng1.NW_012115566v1     1908188 30 -   3067355 TGACTGCATATATAATGGCCAGGAACTGAA
i colAng1.NW_012115566v1   C 0 I 320
s calJac3.chr4             171430985 30 - 171630274 TGACTGGATGTGTAATGGCCAGGAACTGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            257286 30 -    375362 TGACTGGATATATAATGGCAAGGAACTGAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      255783 30 -    373274 TGACTGGATATATAATGGCAAGGAACTGAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      187597 30 -    285216 tgactggacatataatggccaggaactgag
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25918780 28 +  26524999 CGACTAGAC--ACAATGGCTGAGAAGTGAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             74277 28 -    302817 tga--gcttcgataacggccagggactggg
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      988197 864 -   3516910 I
e otoGar3.GL873742           1561715 1155 -   2232465 I

a score=219426.000000
s hg38.chr6_GL000254v2_alt    186170 19 +   4827813 TTACCCCAGTgattattaa
s panTro5.chr6              29173653 19 + 175400573 TTACCCCAGTgattattaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29407716 19 + 173848474 TTACCCCAGTgattattaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5208341 19 +   6154872 TTACCCCAGTgattattaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74207489 19 + 122973662 TTACCCCAGTgattattaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29385368 19 + 172585720 TTACCCCAGTGATTATTAA
i rheMac8.chr4             I 327 C 0
s macFas5.chr4              29046228 19 - 170955103 TTACCCCAGTGATTATTAA
i macFas5.chr4             I 327 C 0
s macNem1.NW_012011356v1     2036965 19 -   2996164 TTACCCCAGTGATTATTAA
i macNem1.NW_012011356v1   I 321 C 0
s cerAty1.NW_012001495v1     1898531 19 -   2157725 TTACCCCAGTGATTATTAA
i cerAty1.NW_012001495v1   I 318 C 0
s chlSab2.chr17             28342788 19 -  71996105 TTACCCCAGTGATTATTAA
i chlSab2.chr17            I 323 C 0
s manLeu1.NW_012104165v1     2029183 19 +   2316924 TTACCCCAGTGATTATTAA
i manLeu1.NW_012104165v1   I 330 C 0
s colAng1.NW_012115566v1     1908538 19 -   3067355 TTACCCCAGTGATTATTAA
i colAng1.NW_012115566v1   I 320 C 0
s calJac3.chr4             171431015 19 - 171630274 TTACCCCAGTGACTATTAA
i calJac3.chr4             C 0 I 302
s saiBol1.JH378348            257316 19 -    375362 TTACCCCAGTGACTATTAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      255813 19 -    373274 TTACCCCAGTGACCATTAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      187627 19 -    285216 ttaccccagtgactattaa
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25918808 17 +  26524999 TTACCCCAGAAATAAGG--
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             74305 19 -    302817 tcagcccagagaaaatcaa
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      988197 864 -   3516910 I
e otoGar3.GL873742           1561715 1155 -   2232465 I

a score=5675359.000000
s hg38.chr6_GL000254v2_alt    186189 605 +   4827813 gacatagtccctgttctcaagcaactcagagAAGT--GAGTCAGGTTCATATGAT-ATACATAGTCATGGATGGGTAATTAAAGATAGGGTGACAGCCTGCAATGAAAGAAACTGGT-ACCATCTTCACAGAAGCAATTT----CA--------------------CACAATGTT--------------------------CATGTGATGAACAAGAATTCACCACATAGGCAATGAGCGGGAAGCCTTTCCAGGCAGAAGAAATGGCACAGGCAAAAGAGTGGGGAGAGAAAGCAAATGGTGCTAT-CTGGCTGGAGCACATGAGTGTTGAGGGAAGGGACCAGAAAAGGTAAGGCCTTGTCATGCCTGGCCTGGGAGGCTGG---GGGTAAGGACTCTATCCCAACTGGGAAGCATGGAAGATTGTCACACAGGAAAGTGACAGGG-TCAGATATGTGCCCTATGG---AGGATGGAACAACCAATAACAGCTTCCTTGC-----CCAATTTCCCTGGGCCCTTCATATGTAATCCATACCCGCTGTCTGTCCTTCACGGGTGTTCA-----CCAACTGCTGTC--TCTAGCTTTGGGTAGGAGG----------GGGAGAGGTGCTC--TCCCCACGATTCCCTCTTGGCGCTCATTTGTTTGCCATAATTTA-CTGTCCTTCGTTCTT
s panTro5.chr6              29173672 605 + 175400573 gacatagtccctgttctcaagtaactcagagAAGT--GAGTCAGGTTCATGTGAT-ATACGTAGTCATGGATGGGTAATTAAAGATAGGGTGACAGCCTGCAATTAAAGAAACTGGT-ACCATCTTCACAGAAGCAATTT----CA--------------------CACAATGTT--------------------------CATGTgatgaacaagagttcaccacataggcaatgagcgggaagcctttccaggcagaagaaatggcacaggcaaaagagtggggagagaaagcaaatggtgctat-ctggctggagcacatgagtgttgagggaagggaccagaaaaggtaaggcCTTGTCATGCCTGGCCTGGGAGGCTGG---GGGTAAGGACTCTATCCCAACTGGGAAGCATGGAAGATTGTCACACAGGAAAGTGACAGGG-TCAGATATGTGCCCTATGG---AGGATGGAACAACCAATAACAGTTTCCTTGC-----CCAATTTCCCTGGGCCCTTCATATGTAATCCATATCCGCTGTCTGTCCTTCACGGGTGTTCA-----CCAACTGCTGTC--TCTAGCTTTGGGTAGGAGG----------GGGAGAGGTGCTC--TCCCCACGATTCCCTCTTGGCGCTCATTTGTTTACCATAATTTA-CTGTCCTTCGTTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29407735 605 + 173848474 gacatagtccctgttctcaagtaactcagagAAGT--GAGTCAGGTTCATGTGAT-ATACGTAGTCATGGATGGGTAATTAAAGATAGGGTGACAGCCTGCAATGAAAGAAACTGGT-ACCATCTTCACAGAAGCAATTT----CA--------------------CACAATGTT--------------------------CATGTGATGAACAAGAGTTCACCACATAGGCAATGAGCGGGAAGCCTTTCCAGGCAGAAGAAATGGCACAGGCAAAAGAGTGGGGAGAGAAAGCAAATGGTGCTAT-CTGGCTGGAGCACATGAGTGTTGAGGGAAGGGACCAGAAAAGGTAAGGCCTTGTCATGCCTGGCCTGGGAGGCTGG---GGGTAAGGACTCTATCCCAACTGGGAAGCATGGAAGATTGTCACACAGGAAAGTGACAGGG-TCAGATATGTGCCCTATGG---AGGATGGAACAACCAATAACAGTTTCCTTGC-----CCAATTTCCCTGGGCCCTTCATATGTAATCCATACCCGCTGTCTGTCCTTCATGGGTGTTCA-----CCAACTGCTGTC--TCTAGCTTTGGGTAGGAGG----------GGGAGAGGTGCTC--TCCCCACGATTCCCTCTTGGCGCTCATTTGTTTACCAAAATTTA-CTGTCCTTCGTTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5208360 605 +   6154872 gacatagtccctgttctcaagtaactcatagAAGT--GAGTCAGGTTCATGTGAT-ATACGTAGTCATGGATGGGTAATTAAAGAGAGGGTGACAGCCTGCAATAAAAGAAACTGGT-ACCATCTTCACAGAAGCAATTT----CA--------------------CACAATGTT--------------------------CATGTGATGAACAAGAGTTCACCACATAGGCAATGAGCGGGAAGCCTTTCCAGGCAGAAGAAATGGCACAGGCAAAAGAGTGGGGAGAGAAAGCAAATGGTGCTAT-CTGGCTGGAGCACATGAGTGTTGAGGGAAGGGACCAGAAAAGGTAAGGCCTTGTCATGCCTGGCCTGGGAGGCTGG---GGGTAAAGACTCTATCCCAACTGGGAAGCATGGAAGATTGTCACACAGGAAAGTGACAGGG-TCAGATATGTGCCCTATGG---AGGATGGAACAACCAATAACAGTTTCCTTGC-----CCAATTTCCCTGGGCCCTTCATATGTAATCCATACCCGCTGTCTGTCCTTCACGGGTATTCA-----CCAACTGCTGTC--TCTAGCTTTGGGTAGGAGG----------GGGAGAGGTGCTC--TCCCCACGATTCCCTCTTGGTGCTCATTTGTTTGCCATAATTTA-CTGTCCTTCGTTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74207508 603 + 122973662 gacatagtccctgttctcaagtaactcagagAAGT--GAGTCACGTTCATGTGATAATATGTAGTCATGGATGGGTAATTAAAGACAGGGTGACAGCCTGCAATGAAAGAAACTGGT-ACCATCTTCACAGAAGCAATTT----CA--------------------CACAATGTT--------------------------TATGTGATGAACAAGAGTTCACCACATAGGCAATGAGCGGGAAACCTTTCCAGGCAGAAGAAATGGCACAGGTAAAAGAGTGGGGAGAGAAA-CAAATGGTGCTAT-CTGGCTGGAGCACATGAGTGTTGAGGGAAGGGACCAGAAAAGGTAAGGCCTTGTCATGCCTGGCCTGGGAGGCTGG---GGGTAAGGACTCTATCCCAACTGGGAAGCATGGAAGATTGTCACACAGGAAAGTGACAGGG-TCAGATATGTCCCCTATGG---AGGATGGAACAACCAATA--AGTTTCCTTGC-----CCAATTTCCCTGGGCCCTTCATATGTAATCCATACCCGCTGTCTGCCCTTCATGGGTGTTCA-----CCAACTGCTGTC--TCTAGCTTTGGGTGGGAGG----------GGGAGAGGTGGTC--TCCCCATGATTCACTCTTGGTGCTGATTTGTTTGCCGTAACTTA-CTGTCCTTTGTTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29385387 603 + 172585720 GAC--AGTCCCTGTTCTCAAGTAACTCAGAGAAGT--GAGTCAGGTTCATGTGAT-ATACGCAGTCATGGATGGGTAATTAAAGAGAGGGTGACAGCCTGCAATGAAAGAAGCTGGT-ACCATCTTCACAGAAGCAATTT----CA--------------------CACAGTGTT--------------------------TATGTgatgaacaagagttcaccacataggcaatgagtgggaaggctttccaggcagaagaaatggcacaggcaaaACAGTGGAGAGAGAAAGCAAATGGTGCTAT-CTGCCTGGAGCACATGAGTGTTGAGGGAAGGGACCAGAAAAGGTGAGGCCTTGTCATGCCTGGCCTGGGAGGCTGG---GGGTAACGACTCTATCCCAACTGGGAAGCATGGAAGACTGTCACATAGGAAAGTGACAGGG-TCAGATATGTGCCCTATGG---AGGATGGAACAACCAGTAACAGTTTTCTTGC-----ACAATCTTCCTGGGCCCTTCATATGTAAGCCATACC--CTGTCTGTCCTTCACGAGTGTTCA-----CCAACTGCTGTCTATCCAGCTTTGGGTGGGAGG----------GAGAGAGGTGGTC--TCCCCACGGTTCCCTCTTGGTGCTGATTTGTTTGCCATAACTTA-CTGTCCTTCTTTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29046247 600 - 170955103 GAC--AGTCCCTGTTCTCAAGTAACTCAGAGAAGT--GAGTCAGGTTCATGTGAT-ATACGCAGTCATGGATGGGTAATTAAAGAGAGGGTGACAGCCTGCAATGAAAGAAGCTGGT-ACCATCTTCACAGAAGCAATTT----CA--------------------CACAGTGTT--------------------------TATGTgatgaacaagagttcaccacataggcaatgagtgggaaggctttccaggcagaagaaatggcacaggcaaaACAGTGGAGAGAGAAAGCAAATGGTGCTAT-CTGCCTGGAGCACATGAGTGTTGAGGGAAGGGACCAGAAAAGGTGAGGCCTTGTCATGCCTGGCCTGGGAGGCTGG---GGGTAACGACTCTATCCCAACTGGGAAGCATGGAAGACTGTCACATAGGAAAGTGACAGGG-TCAGATATGTGCCCTATGG---AGGATGGAACAACCAGTAACAGTTTTC---C-----ACAATCTTCCTGGGCCCTTCATATGTAAGCCATACC--CTGTCTGTCCTTCACGAGTGTTCA-----CCAACTGCTGTCTATCCAGCTTTGGGTGGGAGG----------GAGAGAGGTGGTC--TCCCCACGGTTCCCTCTTGGTGCTGATTTGTTTGCCATAACTTA-CTGTCCTTCTTTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2036984 603 -   2996164 GAC--AGTCCCTGTTCTCAAGTAACTCAGAGAAGT--GAGTCAGGTTCATGTGAT-ATACGCAGTCATGGATGGGTAATTAAAGGGAGGGTGACAGCCTGCAATGAAAGAAGCTGGT-ACCATCTTCACAGAAGCAATTT----CA--------------------CACAGTGTT--------------------------TATGTgatgaacaagagttcaccacataggcaatgagcgggaaggctttccaggcagaagaaatggcacaggcaaaACAGTGGAGAGAGAAAGCAAATGGTGCTAT-CTGCCTGGAGCACATGAGTGTTGAGGGAAGGGACCAGAAAAGGTGAGGCCTTGTCATGCCTGGCCTGGGAGGCTGG---GGGTAACGACTCTATCCCAACTGGGAAGCACGGAAGACTGTCACATAGGAAAGTGACAGGG-TCAGATATGTGCCCTATGG---AGGATGGAACAACCAGTAACAGTTTTCTTGC-----ACAATCTTCCTGGGCCCTTCATATGTAAGCCATACC--CTGTCTGTCCTTCACGAGTGTTCA-----CCAACTGCTGTCTATCCAGCTTTGGGTGGGAGG----------GAGAGAGGTGGTC--TCCCCACGGTTCCCTCTTGGTGCTGATTTGTTTGCCATAACTTA-CTGTCCTTCTTTCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1898550 602 -   2157725 GAC--AGTCCCTGTTCTCAAGTAACTCAGAGAAGT--GAGTCAGGTTCATGTGAT-ATACGCAGTCATGGATGGGTAATTAAAGAGAGGG-GACAGCCTGCCATGAAAGAAGCTGGT-ACCATCTTCACAGAAGCAATTT----CA--------------------CACAGTGTT--------------------------TATGTgatgaacaagagttcaccacataggcaatgagcgggaaggctttccaggcagaagaaatggcacaggcaaaACAGTGGAGAGAGAAAGCAAATGGTGCTAT-CTGCCTGGAGCGCATGAGTGTTGAGGGAAGGGACCAGAAAAGGTGAGGCCTTGTCATGCCTGGCCTGGGAGGCTGG---GGGTAACGACTCTATCCCAACTGGGAAGCATGGAAGACTGTCACACAGGAAAGTGACAGGG-TCAGATATGTGCCCTATGG---AGGATGGAACAACCAGTAACAGTTTTCTTGC-----CCAATCTTCCCGGGCCCTTCATATGTAAGCCATACC--CTGTCTGTCCTTCACGCGTGTTCA-----CCAACTGCTGTCTATCCAGCTTTGGGTGGGAGG----------GAGAGAGGTGGTC--TCCCCACGATTCCCTCTTGGTGCTGATTTGTTTGCCATAACTTA-CTGTCCTTCTTTCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28342807 603 -  71996105 GAC--AGTCCCTGTTCTCAAGTAACTCAGAGAAGT--GAGTCAGGTTCATGTGAT-ATACGAAGTCATGGATGGGTAATTAAAGACAGGGTGACAGCCTGCAATGAAAGAAGCTGGT-ACCATCTTCACAGAAGCAATTT----CA--------------------CACAGTGTT--------------------------TATGTgatgaacaagagttcaccacataggcaatgagcgggaaggctttccaggcagaagaaatggcacaggcaaaACAGTGGAGAGAGAAAGCAAATGGTGCTAT-CTGGCTGGAGCACATGAGTGTTGAGGGAAGGGACCAGAAAAGGTGAGGCCTTGTCATGCCTGGCCTGGGAGGCTGG---GGGTAACGACTCTATCCCAACTGGGAAGCATGGAAGATTGTCACACAGGAAAGTGACAGGG-TCAGATATGTGTCCTATGG---AGGATGGAACAACCAGTAACAGTTTTCTTGC-----CCAATCTTCCTGGGCCCTTCATATGTAAGCCACACC--CTGTCTGTCCTTCACGGGTGTTCA-----CCAACTGCTGTCTATCCAGCTTTGGGTGGGAGG----------GAGAGAGGTGGTC--TCCCCACGATTCCCTCTTGGTGCTGATTTGTTTGCCATAACTTA-CTGTCTTTCTTCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2029202 602 +   2316924 GAC--AGTCCCTGTTCTCAAGTAACTCAGAGAAGT--GAGTCAGGTTCATGTGAT-ATACGCAGTCATGGATGGGTAATTAAAGAGAGGG-GACAGCCTGCAATGAAAGAAGCTGGT-ACCATCTTCACAGAAGCAATTT----CA--------------------CACAGTGTT--------------------------TATGTgatgaacaagagttcaccacataggcaatgagcgggaaggctttccaggcagaagaaatggcacaggcaaaACAGTGGAGAGAGAAAGCAAATGGTGCTAT-CTGCCTGGAGCACATGAGTGTTGAGGGAAGGGACCAGAAAAGGTGAGGCCTTGTCATGCCTGGCCTGGGAGGCTGG---GGGTAACGACTCTATCCCAACTGGGAAGCATGGAAGACTGTCACACAGGAAAGTGACAGGG-TCAGATATGTGCCCTATGG---AGGATGGAACAACCAGTAACAGTTTTCTTGC-----CCAATCTTCCTGGGCCCTTCATATGTAAGCCATACC--CTGTCTGTCCTTCACGGGTGTTCA-----CCAACTGCTGTCTATCCAGCTTTGGGTGGGAGG----------GAAAGAGGTGGTC--TCCCCACGATTCCCCCTTGGTGCTGATTTGTTTGCCATAACTTA-CTGTCCTCCTTTCTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1908557 594 -   3067355 GAC--AGTCCCTGTTCTCAAGTAACTCAGAGAAGT--GGGTCAGGTTCATGTGAT-ATACGCAGTCATGGATGGGTAATTAAAGAAAGGGTGACAGCCTGCAATGGAAGAAGCTGGTAACCATCTTCACAGAAGCAATTT----CA--------------------CACAGTGTT--------------------------TATGTGATGAACAAGAGTTCACCACATAGGCAATGAGCAGGAAGGCTTTCCAGGCAGAAGAAATGGCACAGGCAAAACAGTGGAGAGAGAAAGCAAATGGTGCTAT-CTGGCTGGAGCACATGAGTGTTGAGGGAAGGGACCAGAAAAGGTGAGGCCTTGTCATGCCTGGCCTGGGAGGCTGG---GGGTAACGACTCTATCCCAACTGGGAAGCATGGAAGATTGTCACACAGGAAAGTGACAGGG-TCAGATATGTGCCCTATGG---AGGATGGAACAACCAGTAACAGTTTTCTTGC-----CCAATCTTCCTGGGCCCTTCACGTGTAAGCCATACC--CTGTCTGTCC----------TTCA-----CCAACTGCTGTCTATCCAGCTTTGGGTGGCAGG----------GAGAGAGGTGGTC--TCCCCACGATTCCCTCTTGGTGCTGATTTGTTTACCATAACTTA-CTGTCCTTCTTTCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171431336 577 - 171630274 gacaaaaTCCCTATTCTCAAATAACTCAGAGAAGT--GAGTCAGGTTCATGTGAT-ACATGTAGTCATGGTAAGGTAATTAAAGATAGGGTGACAGCCTGCAATGAAAGAAACTGGT-ACCGTCTTCATGGAAGCAATTT----------------------------CAGTGTT--------------------------TACGGGATGAACGAGAGCCCACCATACAGGCAACACGCAGGAAGCCTTTCCAGGCAGAAGAAATGGCACAGGCAAAATCACAGGGCAACAAAGCAAATGGTGCTCT-CTGGCTGAAGCACACGAGTGTTGAGGGAAAAGGTCAGAAAAACTGAGACCTTGTCACACCTTGCCTGGCA----------------GCCTCTATTGCAATTGGGAGGCATGAAATATTGTCACATGGGAAAGGGACAGGG-TCACATATGTGCCCTACGG---AGGACGGAACAACCAAGCGCAGCTTCCTTGC-----CCGATTG-------CCCTTCACATATACTCCATATCCTCTACCTGTCGTTCACGGGTGTTCA-----CCAAACGCTGTC--TCTAGCTTCGGGT----GG----------GAGAGAGGTGGCT--TCCCTATGGTTTCCTCTTGGTGCTCATTTGTTTGCCATAACTTA-CTGTCTGTCTTTCTT
i calJac3.chr4             I 302 C 0
s saiBol1.JH378348            257335 561 -    375362 GACAAAATCCTTATTCTCAAGTAACTCAGAGAAGT--GAGTCAGGTTCATGTGAT-ACACGTAGTCATGGTAAGGTAATTAAAGATAGGGTGACAGCTTGTAATGAAAGAAACTGGT-ACCATCTTCATGGAAGCAATTT----------------------------CAGTGCT--------------------------TATGGGATGAACAAGAGTCCACCACACAGGCAACAAGCAGGAAGCCTTTCCAGGCAGAAGAAATGGCACAGGCAAAAGAGTGGGGAGAGAAAGCAAACGGTGCTCT-CTGGCTGCAGCACATGAATGTTGAGGGAAAAGATCAGAAAAACTGAGACTTTGTCACACCTTGCCTGGCA----------------GCCTCTATCGCAACTGGGAGGCATGAAATATTGTCACACGGGAAAGGGACAGGG-TCAGATATGTGCCCTACGG---AGGACGG----------------TTCCTTGC-----CCAATTT-------CCCTTCATATATAACCCATATCCTCGACCTGTCTTTCACGGGTGTTCA-----CAAAATGCTGTC--TCTAGCTTGGGGT----GG----------GAAAGAGGTGGTT--TCCCTATGGTTTCCTCTTGGTGCTCATTTGTTTGCCATAACTTA-CTGTCtttttttttt
i saiBol1.JH378348         C 0 I 2401
s cebCap1.NW_016108108v1      255832 571 -    373274 GACAAAATCCCTATTCACAAGTAACTCAGAGAAGT--GAGTCAGATTCATGTGAT-ACACGTAGTCATGGTAAGGTGATTAAAGATAGGGTGACAGCCTGCAATGAAAGAAACTGGT-ACGGTCTTCATGGAAGCAATTT----------------------------CAGTGCT--------------------------TATGGGATGAACGAGAGTCCACCACACAGGCAACAAGCAGGAAGCCTTTCCAGGCCGAAGAAATGGCACAGGCAAAAGCGTGGGGAGAGAAAGCAAACGGTGCTCT-CTGGCTGGAGCACACGAGTGCCGAGGGAAAAGATCAGAAAAACTGAGACTTTGTCACACCTTG-CTGGCA----------------GCCTCTGTTGCAACTGGGAGGCATGAAATACTGTCACACGGGAAACGGACAGGG-TCAGATATGTGCCCTACGG---AGGATGG-----GCAAGTGCAGCTTCCCTGC-----CCAATTT-------CCCTTCATATATAACCCATACCCTCTACCTGTCTTTCACAGGTGTTCA-----CAAAACACTGTC--TCTAGCTTCAGGT----GG----------GAGAGAGGTGGTT--TCCCCATGGTTTCCTCTTGGTGCTCATTTGTTTGCCATAACTTA-TTGTCTTTCTTTCTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      187646 577 -    285216 gacaaaatccctattctcaagtaactcagagAAGT--GAGTCAGGTTCATGTGAT-ATACGTAGTCATGGGAAGGTAATTAAAGACAGGGTGACAGCCTGCAATGAAAGAAACTGGC-ACCATCTTCATGAAAGCAATTT----------------------------CAGTGTT--------------------------TATGGGATGAACCAGAGTCCACCATACAGGCAACAAGCAGGAAGCCTTTCCAGGCAGAAGAAACGGCACAGGCAAAATCGTGGGGAGAGAAAGCTAACGGTGCTCT-CTGGCTGGAGCACAGGAGTGTTGAGGGAAAAGATCAGAAAAACTGAGACTTTGTCACACCTTGCCTGGCA----------------GCCTCTATTGCAACTGGGAGGCATGAAATATTGTCACACGGGAAAGGGACAGGG-TCAGATATGTGCCCTACAG---AGGATGGAACAACCAAGCGCAGCTTCCTTGC-----CCGATTT-------CCCTTCAAATATAATCCATACCCTCTATCTGTCTTTCAGGGGTGTTCA-----CCAAACACTGTC--TCTAGCTTCGGGT----GG----------AAGAGAGGTGGTT--TCCCCATGGTTTCCTCTTGGTGCTCATTTGTTTGCCATAACTTA-CTGTCTTTCTTTCTT
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25918825 537 +  26524999 AATATAGTCAC--------------------AGGA--GAGCCCGGTTCACATGAC-ACATGCAACCACAGGTAG-----TGAGGACAGGATG---GCCTGCAGTGGGAGAAGCTGGT-ACAGCCTTCACAGAGGCAATGTAACACA--------------------CACAGTGTG--------------------------GTTG-GAGAAACAGGGGTTCACCATGTGGTCAAAGGGTAGACACGCTTTCCTGGCAGAAGAAACGAC---------------GGGAGAGATGGTGAACGATGGTGT-CTGGC-AAAGCACCTAAGTTTTGAGGGAGAAG-CCAGAAGAGGTAAGAGA-GAACACACCTTGCCTGGAAGGCCAGGGTGGGGCAAGACTTTCCTGCAACTAGGAGCCGTGAAA------------GGGAAGTGACTGGGTTCAGATATATGCCATGTGGGGTGGACTAGGACACTCAATCCTCGCATCATGACTGCAACCACGTCACCAAGGCCCTTCCCGTGCGGCCCTCACCCCCTTTCTGGCCACCAGGGCTGTTCA-----TCACCTACCCTC--ATTGGCTATGGGT------------------------------------GTGGTGCCCTTCTGGAACAGA--TGTTTGCCAAAACTAGTCTACCCTTCCTTCTC
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             74324 572 -    302817 gacatagtccctgtcctcgagaaacttggtcaagcgagagtcaggttcgc-tgat-----------------ggctaattaaagataaggcgacatcctgggccgggagaggcaggc-gcagtgctccgagaagcagtgc----catcctggcccggagaggcgggcgcagtgctccgagaagcagtgcccttccgggttctggaggatgagcaggagctcaccaagcaggcactgcgtgacagtactgtcccagcag-agaaccagcgt--gcagtggagtggggagaca-ggca---tgtgctctgacggctgaagcacgcaa----------agagGGCCAAGGGAAGGAGGGACCTGACCTTCCGCGCCTTTTCCCCAGG---------------------AGCTGGAAGGCACGAAAG-CTGCCACACAGGGAAGGGGCACGG-CCAGCCACGTGGCCT---G---AGGATGGCGTGAAGGGGAAGGACACACTGGC-----CTCAGTCCCACCCTCTCTTCCT----------------CTGTCTG-------AGGGGGTTTGAACACCCAAGCACCATC--TCTA-CCTTGGCTCTGGGGCCTTTCACACAGAATCCGTGGCCTGTCTTCAAGAGGCC----TGCCGCTCCCTTGTCCGT----------CTGTCCTTC------
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      988197 864 -   3516910 I
e otoGar3.GL873742           1561715 1155 -   2232465 I

a score=277895.000000
s hg38.chr6_GL000254v2_alt    186794 38 +   4827813 CACCCAACCCCCACCACCAACAGGA----------CTCTATTATAAAC
s panTro5.chr6              29174277 38 + 175400573 CACCCAACCCCCACCACCAACAGGA----------CTCTATTATAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29408340 38 + 173848474 CACCCAACCCCCACCACCAACAGGA----------CTCTATTATAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5208965 38 +   6154872 CACCCAACCCCCACCACCAACAGGA----------CTCTATTATAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74208111 38 + 122973662 CACCCCACCCCCACCACCAACAGGA----------CTCTATTATAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29385990 38 + 172585720 CACCCCACCCCCACCACCAACAGGA----------CTCTAATATAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29046847 38 - 170955103 CACCCCACCCCCACCACCAACAGGA----------CTCTAATATAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2037587 38 -   2996164 CACCCCACCCCCACCACCAACAGGA----------CTCTAATATAAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1899152 38 -   2157725 CAGCCCACCCCCACAACCAACATGA----------CTCTAATATAAGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28343410 38 -  71996105 CACCCCACCCCCACCACCAACAGGA----------CTCTAATATAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2029804 38 +   2316924 CACCCCACCCCCACCACCAACATGA----------CTCTAATATAAAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1909151 38 -   3067355 CACCCCACCCCCACCACCAACAGGA----------CTCTAATATAAAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171431913 37 - 171630274 CAGCC-GCCCCCACCACCATCAAGT----------CTCTATTAAAAAG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      256403 37 -    373274 CAGCC-GCCCCCACCACCAGCAGGT----------CTCTATTAAAAAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      188223 37 -    285216 CAGCT-GCCCCCACCACCATCAGGT----------CTCTATTAAAAAG
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25919362 30 +  26524999 TATCTACCTCCCACTGCCAA---AA----------CCCTGAGG-----
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             74896 39 -    302817 -------CACCCACCCCCGTCAGGGCGAGCATTACCTCTGTTAAAG--
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      988197 864 -   3516910 I
e saiBol1.JH378348            257896 2401 -    375362 I
e otoGar3.GL873742           1561715 1155 -   2232465 I

a score=233842.000000
s hg38.chr6_GL000254v2_alt    186832 20 +   4827813 TTTTGTTCTAAACAAGGAGC
s panTro5.chr6              29174315 20 + 175400573 TTTTGTTCTAAACAAGGAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29408378 20 + 173848474 TTTTGTTCTAAACAAGGAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5209003 20 +   6154872 TTTTGTTCTAAACAAGCAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74208149 20 + 122973662 TTTTGTTCTAAACAAGGAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29386028 20 + 172585720 TTTTGTTCTAAACAAGGAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29046885 20 - 170955103 TTTTGTTCTAAACAAGGAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2037625 20 -   2996164 TTTTGTTCTAAACAAGGAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1899190 20 -   2157725 TTTTGTTCTAAACAAGGAGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28343448 20 -  71996105 TTTTGTTCTAAACAAGGAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2029842 20 +   2316924 TTTTGTTCTAAACAAGGAGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1909189 20 -   3067355 TTTTGTTCTAAACAAGGAGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171431950 20 - 171630274 TTTTGTTCTAAACAAGGAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            260297 20 -    375362 TTCTTTTCAAAACAAAACTC
i saiBol1.JH378348         I 2401 C 0
s cebCap1.NW_016108108v1      256440 20 -    373274 TTTTGTTCTAAACAAGGAGC
i cebCap1.NW_016108108v1   C 0 I 1489
s aotNan1.NW_018494050v1      188260 20 -    285216 TTTTGTTCTAAACAAGGAGC
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25919392 20 +  26524999 CTCTCTGCTAAACAAAGTGT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             74935 20 -    302817 CTTTGTTCCTAACAAGGGGT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      988197 864 -   3516910 I
e otoGar3.GL873742           1561715 1155 -   2232465 I

a score=22552.000000
s hg38.chr6_GL000254v2_alt    186852 2 +   4827813 CA
s panTro5.chr6              29174335 2 + 175400573 CA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29408398 2 + 173848474 CA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5209023 2 +   6154872 CA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74208169 2 + 122973662 CA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29386048 2 + 172585720 CA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29046905 2 - 170955103 CA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2037645 2 -   2996164 CA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1899210 2 -   2157725 CA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28343468 2 -  71996105 CA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2029862 2 +   2316924 CA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1909209 2 -   3067355 CA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171431970 2 - 171630274 CA
i calJac3.chr4             C 0 I 2571
s saiBol1.JH378348            260317 2 -    375362 CT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      188280 2 -    285216 CA
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25919412 2 +  26524999 CA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             74955 2 -    302817 CA
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      988197 864 -   3516910 I
e otoGar3.GL873742           1561715 1155 -   2232465 I
e cebCap1.NW_016108108v1      256460 1489 -    373274 I

a score=10000.000000
s hg38.chr6_GL000254v2_alt    186854 1 +   4827813 g
s panTro5.chr6              29174337 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29408400 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5209025 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74208171 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29386050 1 + 172585720 G
i rheMac8.chr4             C 0 I 2106
s macFas5.chr4              29046907 1 - 170955103 G
i macFas5.chr4             C 0 I 2090
s macNem1.NW_012011356v1     2037647 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 I 1776
s cerAty1.NW_012001495v1     1899212 1 -   2157725 G
i cerAty1.NW_012001495v1   C 0 I 1796
s chlSab2.chr17             28343470 1 -  71996105 G
i chlSab2.chr17            C 0 I 1775
s manLeu1.NW_012104165v1     2029864 1 +   2316924 G
i manLeu1.NW_012104165v1   C 0 I 1801
s colAng1.NW_012115566v1     1909211 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 I 2068
s calJac3.chr4             171434543 1 - 171630274 g
i calJac3.chr4             I 2571 C 0
s saiBol1.JH378348            260319 1 -    375362 g
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      188282 1 -    285216 G
i aotNan1.NW_018494050v1   C 0 I 1164
s canFam3.chr35             25919414 1 +  26524999 G
i canFam3.chr35            C 0 I 1148
s dasNov3.JH561790             74957 1 -    302817 G
i dasNov3.JH561790         C 0 I 1036
e proCoq1.NW_012147953v1      988197 864 -   3516910 I
e otoGar3.GL873742           1561715 1155 -   2232465 I
e cebCap1.NW_016108108v1      256460 1489 -    373274 I

a score=16228.000000
s hg38.chr6_GL000254v2_alt    186855 10 +   4827813 gctgggcgcg
s panTro5.chr6              29174338 10 + 175400573 gctgggcgcg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29408401 10 + 173848474 gctgggcgcg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5209026 10 +   6154872 gctgggcgtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74208172 10 + 122973662 gccgagcatg
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29048998 10 - 170955103 GTTAggtgca
i macFas5.chr4             I 2090 C 0
s calJac3.chr4             171434544 10 - 171630274 gctgggtcca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            260320 10 -    375362 gctgggtgca
i saiBol1.JH378348         C 0 C 0
e dasNov3.JH561790             74958 1036 -    302817 I
e proCoq1.NW_012147953v1      988197 864 -   3516910 I
e canFam3.chr35             25919415 1148 +  26524999 I
e otoGar3.GL873742           1561715 1155 -   2232465 I
e aotNan1.NW_018494050v1      188283 1164 -    285216 I
e cebCap1.NW_016108108v1      256460 1489 -    373274 I
e colAng1.NW_012115566v1     1909212 2068 -   3067355 I
e manLeu1.NW_012104165v1     2029865 1801 +   2316924 I
e chlSab2.chr17             28343471 1775 -  71996105 I
e cerAty1.NW_012001495v1     1899213 1796 -   2157725 I
e macNem1.NW_012011356v1     2037648 1776 -   2996164 I
e rheMac8.chr4              29386051 2106 + 172585720 I

a score=116944.000000
s hg38.chr6_GL000254v2_alt    186865 19 +   4827813 gtggct-cacgtctgtaatc
s panTro5.chr6              29174348 19 + 175400573 gtggct-gacgtctgtaatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29408411 19 + 173848474 gtggct-gacgtctgtaatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5209036 20 +   6154872 gtggctccacgtctgtaatc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74208182 19 + 122973662 gtggct-cacgtctgtaatc
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29049008 19 - 170955103 gtggct-cacacctgtaatc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2039424 19 -   2996164 gtggct-cacacctgtaatc
i macNem1.NW_012011356v1   I 1776 C 0
s cerAty1.NW_012001495v1     1901009 19 -   2157725 gtggct-cacacctgtaatc
i cerAty1.NW_012001495v1   I 1796 C 0
s chlSab2.chr17             28345246 19 -  71996105 gtggct-cacacctgtaatc
i chlSab2.chr17            I 1775 C 0
s manLeu1.NW_012104165v1     2031666 19 +   2316924 gtggct-cacacctgtaatc
i manLeu1.NW_012104165v1   I 1801 C 0
s colAng1.NW_012115566v1     1911280 19 -   3067355 gtggct-cacacctgtaatc
i colAng1.NW_012115566v1   I 2068 C 0
s calJac3.chr4             171434554 19 - 171630274 gtggct-cacacctgtaaac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            260330 19 -    375362 gtggct-cacacctgtaaac
i saiBol1.JH378348         C 0 C 0
e dasNov3.JH561790             74958 1036 -    302817 I
e proCoq1.NW_012147953v1      988197 864 -   3516910 I
e canFam3.chr35             25919415 1148 +  26524999 I
e otoGar3.GL873742           1561715 1155 -   2232465 I
e aotNan1.NW_018494050v1      188283 1164 -    285216 I
e cebCap1.NW_016108108v1      256460 1489 -    373274 I
e rheMac8.chr4              29386051 2106 + 172585720 I

a score=14291.000000
s hg38.chr6_GL000254v2_alt    186884 4 +   4827813 ccag
s panTro5.chr6              29174367 4 + 175400573 ccag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29408430 4 + 173848474 ccag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5209056 4 +   6154872 ccag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74208201 4 + 122973662 ccag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29388157 4 + 172585720 ccag
i rheMac8.chr4             I 2106 C 0
s macFas5.chr4              29049027 4 - 170955103 ccag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2039443 4 -   2996164 ccag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1901028 4 -   2157725 ccag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28345265 4 -  71996105 cccg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2031685 4 +   2316924 ccag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1911299 4 -   3067355 ccag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171434573 1 - 171630274 -c--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            260349 1 -    375362 -c--
i saiBol1.JH378348         C 0 C 0
e dasNov3.JH561790             74958 1036 -    302817 I
e proCoq1.NW_012147953v1      988197 864 -   3516910 I
e canFam3.chr35             25919415 1148 +  26524999 I
e otoGar3.GL873742           1561715 1155 -   2232465 I
e aotNan1.NW_018494050v1      188283 1164 -    285216 I
e cebCap1.NW_016108108v1      256460 1489 -    373274 I

a score=333692.000000
s hg38.chr6_GL000254v2_alt    186888 41 +   4827813 cactttgggaggctgaggtgggcggatcacctgaggtcggg
s panTro5.chr6              29174371 41 + 175400573 cactttgggaggctgaggtgggcagatcacctgaggtcggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29408434 41 + 173848474 cactttgggaggctgaggtgggcagatcacctgaggtcggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5209060 41 +   6154872 cactttgggaggctgaggtgggcggatcacctgaggtcggg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74208205 41 + 122973662 cactttgggaggccgaggtgggcagatcaccttaggtcggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29388161 41 + 172585720 cactttggaaggccaaggcaggtggatcacttgaggtcagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29049031 41 - 170955103 cactttggaaggccaaggcaggtggatcacttgaggtcagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2039447 41 -   2996164 cactttggaaggccaaggcaggtggatcacttgaggtcagg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1901032 41 -   2157725 cactttggaaggccaaggcaggtggatcacttgaggtcagg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28345269 41 -  71996105 cactttggaaggccaaggcaggtggatcacttgaggtcagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2031689 41 +   2316924 cactttggaaggccaaggcaggtggatcacttgaggtcagg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1911303 41 -   3067355 cactttggaaggccaaggcaggtggatcacttgaggttagg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171434574 41 - 171630274 cactttgggaggctgagtcaggtggatcacttcaggttagg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            260350 41 -    375362 cactttgggaggatgaggcaggtggatcactccaggttagg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      257949 41 -    373274 cactttgggaggctgaggcaggtggatcacttcaggttagg
i cebCap1.NW_016108108v1   I 1489 C 0
e dasNov3.JH561790             74958 1036 -    302817 I
e proCoq1.NW_012147953v1      988197 864 -   3516910 I
e canFam3.chr35             25919415 1148 +  26524999 I
e otoGar3.GL873742           1561715 1155 -   2232465 I
e aotNan1.NW_018494050v1      188283 1164 -    285216 I

a score=288554.000000
s hg38.chr6_GL000254v2_alt    186929 34 +   4827813 agttcgagaccagcctaaccaacatggagaaaca
s panTro5.chr6              29174412 34 + 175400573 agtttgagaccagcctaaccaacatggagaaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29408475 34 + 173848474 agttcgagaccagcctaaccaacatggagaaaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5209101 34 +   6154872 agttcaagaccagcctaaccaacacggagaaaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74208246 34 + 122973662 agttcaagaccagcctaaccaacatggagaaaca
i nomLeu3.chr1a            C 0 I 2325
s rheMac8.chr4              29388202 34 + 172585720 aattcgagacctgcctggtcaatatggtgaaacc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29049072 34 - 170955103 aattcgagacctgcctggtcaatatggtgaaacc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2039488 34 -   2996164 aattcgagaactgcctggtcaatatggtgaaacc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1901073 34 -   2157725 aattcgagacctgcctggtcaatatggtgaaacc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28345310 34 -  71996105 aattcgagacctgcctggtcaatatggtgaaacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2031730 34 +   2316924 aattcgagacctgcctggtcaatatggtcaaacc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1911344 34 -   3067355 agttcgagacctgcctggtcaatgtggtgaaacc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171434615 34 - 171630274 agttcaagaccagcctggtcaacatggtggaacc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            260391 34 -    375362 agttcaagaccagcctggtcagcatggtgaaatc
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      257990 34 -    373274 agttcaagaccagcctggtcagcatggtgaaacc
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      189447 34 -    285216 agttcaagaccagcctggtcaacatggtgaaacc
i aotNan1.NW_018494050v1   I 1164 C 0
e dasNov3.JH561790             74958 1036 -    302817 I
e proCoq1.NW_012147953v1      988197 864 -   3516910 I
e canFam3.chr35             25919415 1148 +  26524999 I
e otoGar3.GL873742           1561715 1155 -   2232465 I

a score=1622376.000000
s hg38.chr6_GL000254v2_alt    186963 178 +   4827813 ccatctctactaaaaatacaaaaattagctgagtctgttggcgt-acgcctgtagcctcagctacctgggaggctgaggtgggagaatcgcttgaactgggaggcagaggttgcagcgagccaaaacctcaccattgcactccagcctggatgac--agtgaga-ccctgt-ct------------------taaaaaaaa
s panTro5.chr6              29174446 178 + 175400573 ccatctctactaaaaatacaaaaattagctgagtctgttggcgt-acgcctgtagcctcagctacctgggaggctgaggtgggagaatcgcttgaactgggaggcagaggttgcagcgagccgaaacctcaccattgcactccagcctggatgac--agtgaga-ccctgt-ct------------------taaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29408509 179 + 173848474 ccatctctactaaaaatacaaaaattagctgagtctgttggcgt-acgcctgtagcctcagctacctgggaggctgaggtgggagaatcgcttgaactgggaggcagaggttgcagcgagccgaaacctcaccattgcactccagcctggatgac--agtgaga-ccctgtact------------------taaaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5209135 179 +   6154872 ccatctctactaaaaatacaaaaattagctgagtctgtcggcgt-gggcctgtagcctcagctacctgggaggctgaggtgggagaatcgcttgaactgggaggcagaggttgcagcgagccgaaacctcaccattgcactccagcctgggtgac--agtgagacccctgt-ct------------------taaaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74210605 180 + 122973662 ccatctctactaaaaatacaaaaattagctgagtctgttggcac-acgcctgtagcctcagctacctgggaggctgaggtgggagaatcgcttgaactgggaggcagaggttgcagtgagccaaaacctccccactgcactccagcctgggtgacagagtgaga-cccggc-ca------------------aaaaaataa
i nomLeu3.chr1a            I 2325 C 0
s rheMac8.chr4              29388236 180 + 172585720 ccatctctactaaaaatacaaaaatcagctgggtgtgttggcac-atgcctgtagcctcagctacctgggaggctgaggtgggagaatcacttgaaatgtgaggcagaggttgcagtgagtcgaaaccttgccattgcactccagcctgggtgacagagtgaga-ccctgt-cg------------------gaaataaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29049106 180 - 170955103 ccatctctactaaaaatacaaaaatcagctgagtgtgttggcac-atgcctgtagcctcagctacctgggaggctgaggtgggagaatcacttgaaatgtgaggcagaggttgcagtgagtcgaaaccttgccattgcactccagcctgggtgacagagtgaga-ccctgt-cg------------------gaaataaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2039522 180 -   2996164 ccatctctactaaaaatacaaaaatcagctgggtgtgttggcac-atgcctgtagcctcagctacctgggaggctgaggtgggagaatcacttgaaatgtgaggcagaggttgcagtgagtcgaaaccttgccattgcactccagcctgggtgacagagtgaga-ccctgt-cg------------------gaaataaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1901107 180 -   2157725 ccatctctactaaaaatacaaaaatcagctgggtgtgttggcgc-atgcctgtagcctcagctacctgggaggctgaggtgggagaatcacttgaaatgtgaggcagaggttgcagtgagtcgaaaccttgccgttgcactccagcctgggtgacagagtgaga-ccctgt-cg------------------gaaaaaaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28345344 180 -  71996105 ccatctctactaaaaatacaaaaatcagctgggtgtgttggcgc-atgcctgtagcctcagctacctgggaggctgaggtgggagaatcacttgaaatgggaggcagaggttgcagtgagtcaaaacctcgccattgcactccagcctgagtgacagagtgaga-ccctgt-cg------------------aaaaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2031764 180 +   2316924 ccatctctactaaaaatacaaaaatcagctgggtgtgttggcgc-atgcctgtagcctcagctacctgggaggctgaggtgggagaatcacttgaaatgtgaggcagaggttgcagtgagtcgaaaccttgccgttgcactccagcctgggtgacagagtgaga-ccctgt-cg------------------gaaaaaaaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1911378 180 -   3067355 ccatctctactaaaaatacaaaaatcagctgggtgtgttggcgc-atgcctgtagcctcagctacctgggaggctgaggtgggagaatcacttgaaatgggaggcagaggttgcagtgagtcaaaacctcgccattgcactccagcctgggtgacagagtgaga-ccctgt-cg------------------aaaaaaaaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171434649 187 - 171630274 ccatctctattagaaatacaaaaattagctgggtgtgttggtgc-acacctgtagcccctgctccctgggaggctgaggtgggagaattgcttgaactgggaggcagaggttgcagtgagccgaaaccttgccattgcact--------ggtgacagtgtgagg-ccctgt-ctcaaacaaaaaa---aaaaaaaaaaaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            260425 170 -    375362 ccatcgctactagaaatacaaaaattagctgggtgtgttggcacaatggctgtaggccccgctacctgggaggctgaagtgggagaattgcttgaattgggagacagaggttgcagtgagccgaaacctcgccattgcatt--------ggtgacagtgtgagg-ccctgt-ct---------------------aaaaaa
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      258024 190 -    373274 ccatctctactagaaatacaaaaattagctgggtgtgttggcac-atgcctgtagcccccgctacctgcaaggctgatgtgggagaattgcttgaactgggaggcagaggttgcagtgagccaaaaccttgccattgcatt--------gatgacagtgtgagg-ccctgt-ctcaaaaaaaaaaaagaaaaaaaagaaaa
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      189481 176 -    285216 ccatctctactagaaatacaaaaattagctgggtgtgttggcgc-acgcctgtagcccccgctacctgggaggctgaggtgggagaattgcttgaactgggaggcagaggttgcagtgagccgaaacctcatcattgcatt--------ggtgacagtgtgagg-ccctgt-ct--------------caaaaaaataaaa
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             74958 1036 -    302817 I
e proCoq1.NW_012147953v1      988197 864 -   3516910 I
e canFam3.chr35             25919415 1148 +  26524999 I
e otoGar3.GL873742           1561715 1155 -   2232465 I

a score=222502.000000
s hg38.chr6_GL000254v2_alt    187141 30 +   4827813 aaa---aaaaa-----------TT-CCCATATACCCCTAATATAA
s panTro5.chr6              29174624 34 + 175400573 aaa---aaaaaaaa-------aTT-CCCATATACCCCTAATATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29408688 31 + 173848474 aaa---aaaaa-----------TTACCCATATACCCCTAATATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5209314 41 +   6154872 aaa---aaaaaaaaaaaaaTTATT-CCTATATACCCCTAACATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74210785 37 + 122973662 aaa---ataataaaaaaa----TT-CCCATATACCCCTAATATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29388416 30 + 172585720 ag----aaaaaa----------TT-CCCATATACCCCTATCATAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29049286 31 - 170955103 aga---aaaaaa----------TT-CCCATATACCCCTATCATAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2039702 31 -   2996164 aga---aaaaaa----------TT-CCCATATACCCCTATCATAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1901287 31 -   2157725 aga---aaaaaa----------TT-CCCATATATCCCTATCATAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28345524 31 -  71996105 aga---aaaaaa----------TT-CCCATATACCCCTATCATAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2031944 31 +   2316924 aga---aaaaaa----------TT-CCCATATACCCCTATCATAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1911558 34 -   3067355 aaaaagaaaaaa----------TT-CCCATATACCCCTATCATAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171434836 31 - 171630274 aaa---aaaaaa----------aT-CCTAAATACCTCTATCATGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            260595 31 -    375362 aaa---aaaaaa----------aT-CCTAAATACCGCTATCATGA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      258214 31 -    373274 aaa---agaaaa----------GT-CCTAAATACCTCTATCATGA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      189657 31 -    285216 aaa---taaaaa----------aT-CCCAAATACCTCTATCATGA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1562870 28 -   2232465 -AA---ACAAAC----------TT-TCCAAATATCCATATCAG--
i otoGar3.GL873742         I 1155 C 0
s dasNov3.JH561790             75994 30 -    302817 -AA---ACACAA----------GA-CACAAATACCCCTATCCTGA
i dasNov3.JH561790         I 1036 C 0
e proCoq1.NW_012147953v1      988197 864 -   3516910 I
e canFam3.chr35             25919415 1148 +  26524999 I

a score=1512274.000000
s hg38.chr6_GL000254v2_alt    187171 129 +   4827813 ATTAACACATCAGCCACTTGTTAAGGCCTT--GAGACTGGAGGAAGAGGGCAGAGTAAAAAATTCAGAATTAAGGCATTGTTAAGAAAGGAGAATAAGCCAAAGAGAAGCAACAGTGGGGATTACACAAAT
s panTro5.chr6              29174658 129 + 175400573 ATTAACACATCAGCCACTTGTTAAGGCCTT--GAGACTGGAGGAAGAGGGCAGAGTAAAAAATTCAGAATTAAGGCATTGTTAAGAAAGGAGAATAAGCCAAAGAGAAGCAACAGTGGGGATTACACAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29408719 129 + 173848474 ATTAACACATCAGCCACTTGTTAAGGCCTT--GAGACTGGAGGAAGAGGGCAGAGTAAAAAATTCAGAATTAAGGCATTGTTAAGAAAGGAGAATAAGCCAAAGAGAAGCAACAGTGGGGATTACACAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5209355 129 +   6154872 ATTAACACATCAGCTACTTGTTGAGGCCTT--GAGACTGGAGGAAGAGGGCAGAGTAAAAAATTCAGAATTAAGGCATTGTTAAGAAAGGAGAATAAGCCAAAGAGAAGCAACAGTGGGGATTACACAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74210822 131 + 122973662 ATTAACACATCAGCCACTTGTTGAGGCCTTGAGAGACTGGAGGAAGAGGACAGAGTAAAAAATTCAGAATTAAGGCATTGTTAAGAAAGGAGAATAACCCAAAGAGAAGCAACAGTGGGGATTACACAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29388446 131 + 172585720 ATTAATACATCAGCCACTTGTCGAGGCCTTGAGAGATTGGAGGAAGAGAGCAGAGCAAAAAATTCAGAATTAAGGCATTGTCAAGAAAGGAGAATAACACAAAGAGAAGCAACAGTGGGACTTACACAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29049317 131 - 170955103 ATTAATACATCAGCCACTTGTCGAGGCCTTGAGAGATTGGAGGAAGAGAGCAGAGCAAAAAATTCAGAATTAAGGCATTGTCAAGAAAGGAGAATAACCCAAAGAGAAGCAACAGTGGGACTTACACAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2039733 131 -   2996164 ATTAATACATCAGCCACTTGTCGAGGCCTTGAGAGATTGGAGGAAGAGAGCAGAGCAAAAAATTCAGAATTAAGGCATTGTCAAGAAAGGAGAATAACCCAAAGAGAAGCAACAGTGGGACTTACACAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1901318 131 -   2157725 ATTAACACATCAGCCACTTGTCGAGGCCTTGAGAGATTGGAGGAAGAGAGCAGAGCAAAAAATTCAGAATTAAGGCATTGTCAAGAAAGGAGAATAACCCAAAGAGAAGCAACAGTGGGACTTACACAAAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28345555 131 -  71996105 ATTAACACATCAGCCACTTGTCGAGGCCTTGAGAGATTGGAGGAAGAGTGCAGAGCAAAAAATTCAGAATTAAGGCATTGTCAAGAAAGGAGAATAACCCAAAGAGAAGCAACAGTGGGACTTACACAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2031975 131 +   2316924 ATTAACACATCAGCCACTTGTCGAGGCCTTGAGAGATTGGAGGAAGAGAGCAGAGCAAAAAATTCAGAATTAAGGCATTGTCAAGAAAGGAGAATAACCCAAAGAGAAGCAACAGTGGGACTTACACAAAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1911592 131 -   3067355 ATTAACACATCAGCCACTTGTCGAGGCCTTGAGAGATTGGAGGAAGAGAGCAGAGCAAAAAATTCAGAATTAAGGCATTGTCAAGAAAGGAGAATAACCCAAAGAGAAGCAACAGTGGGACTTACACAAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171434867 125 - 171630274 ATTAACACATCAGCCACTTGTCAAGGCCTT--GAGGCTGGAAGAAGAGAACAGAGTAAAAACTCCACAATCAAGGCACTGTC----AAGGAGAATAACCCAGAGAGAAGCAACAGTGGGCCTTATACAGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            260626 125 -    375362 ATTAACACATCAGCCACTTGTCAAGGCCTT--AAGACTGGAAGAAGAGAACAGAGTAAAAACTTCTTAATTAAGGCACTGTC----AAGGAGAATAACCCAGAGAGAAGCAACAGTGGGCCTTATAAAACC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      258245 125 -    373274 ATTAACACATCAGCCACTTGTCAAGGCCTT--GAGACTGGAAGAAGAAAACAGAGTAAAAACTCCACAATTAAGGCACTGTC----AAGGGGAATAACCCAGAGAGAAGCAACAGTGGGCCTTATACAAAC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      189688 125 -    285216 ATTAACACATCAGCCACTTGTCAAGGCCTT--GAGACTGGAAGAAGAGAACAGAGTAAAAACTCCACAATTAAGGCACTGTC----AAGGAGAATAACCCAGAGAGAAGCAACAGTGGGCCTCATACAAAC
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      989061 131 -   3516910 ATTAGCACATCAGCCACTTGCCAAGGCCTTGTGAGACTAGGGGAAGAGAGCAGAGTGCAAAATTCAGCATTGAGGCACTGTCAAGAAAGGGAAACACTCCAGAGAGAAGCAACAGTGGAGCTTAGGCAAAT
i proCoq1.NW_012147953v1   I 864 C 0
s otoGar3.GL873742           1562898 129 -   2232465 ATTAGTACATCAGCCACCTGCCAAGGCCTTGTGAGACTAGGGAAAGAGAGCAGAGTGAAAAAGT-AGAAGTGAAGGATTGTTAAGAAAGGGAAACATCTCAGAGA-AAGCAACAGGGAGGCTTACACAAAT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             76024 122 -    302817 ATTAGCACACCCGCAGCTTGGCAAGCCTGTGGGGAGATGGGGAAAGGGAACAGAG--AAGAGTTCAGAGTTGAGG-GCCGTC-----AGGTAAACACCCCGGGGAGAAGCAGCCGTGGGGGCTGCCTCAG-
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25919415 1148 +  26524999 I

a score=6460667.000000
s hg38.chr6_GL000254v2_alt    187300 493 +   4827813 CCACTATTAGCAATTGTCTGCAGAATGGTACCAAC--GCAAGCTAACTGTATCCAATAATTTTACCTATCTCAGCTTTGCCAAGGATCAACCCTGGTCTACGC--AGTT--AGCAGGTTAAAGTAAACTGACAGGTCTGATTTCCAAGGGTTCCAAACTTGGCTTCTCCATGCTTTCCCCAAA--------AGTAAGGGAA--TCTTAGTTCTCCGGGTGAGTTCCCA-C----TGCCATGTGCGGTTGATCCACCTCTACCTACAAGTTCT-GGGTGACAT-G-CTGGACAAGTTTAAGGGAAGTAACATCAGCTCTACAGAAGAGGAGAGCACCAGCAGA------ACCAACTGT----GAATTCCAACAACCCTTACCAAGAGTTCAGCTCGTGCCTGTTCCCCCTGGGCCCGACGTCTCTTCTTTAAATCTTTCACTCTTTTTAAATGGTCGAGCTGGTTCTGGATTTGCTCCTGAGAAAAGC-A-AAACAGATGGGCAGTTCAAAATTAGGTAGAC-CTTAGCAT
s panTro5.chr6              29174787 493 + 175400573 CCACTATTAGCAATTGTCTGCAGAATGGTACCAAC--GCAAGCTAACTGTATCCAATAATTTTACCTATCTCAGCTTTGCCAAGGATCAACCTTGGTCTACGC--AGTT--AGCAGGTTAAAGTAAACTGACAGGTCTGATTTCCAAGGGTTCCAAACTTGGCTTCTCCATGCTTTCCCCAAA--------AGTAAGGGAA--TCTTAGTTCTCCGGGTGAGTTCCCA-C----TGCCATGTGCGGTTGATCCACCTCTACCTACAAGTTCT-GGGTGACAT-G-CTGGACAAGTTTAAGGGAAGTAACATCAGCTCTACAGAAGAGGAGAGCACCAGCAGA------ACCAACTGT----GAATTCCAACAACCCTTACCAAGAGTTCAGCTCGTGCCTGTTCCCCCTGGGCCCGACGTCTCTTCTTTAAATCTTTCACTCTTTTTAAATGGTCGAGCTGGTTCTGGATTTGCTCCTGAGAAAAGC-A-AAACAGATGGGCAGTTCAAAATTAGGTAAAC-CTTAGCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29408848 493 + 173848474 CCACTATTAGCAATTGTCTGCAGAATGGTACCAAC--GCAAGCTAACTGTATCCAATAATTTTACCTATCTCAGCTTTGCCAAGGATCAACCTTGGTCTACGC--AGTT--AGCAGGTTAAAGTAAACTGACAGGTCTGATTTCCAAGGGTTCCAAACTTGGCTTCTCCATGCTTTCCCCAAA--------AGTAAGGGAA--TCTTAGTTCTCCGGGTGAGTTCCCA-C----TGCCATGTGCGGTTGATCCACCTCTACCTACAAGTTCT-GGGTGACAT-G-CTGGACAAGTTTAAGGGAAGTAACATCAGCTCTACAGAAGAGGAGAGCACCAGCAGA------ACCAACTGT----GAATTCCAACAAGCCTTACCAAGAGTTCAGCTCGTGCCTGTTCCCCCTGGGCCCGACGTCTCTTCTTTAAATCTTTCACTCTTTTTAAATGGTCGAGCTGGTTCTGGATTTGCTCCTGAGAAAAGC-A-AAACAGATGGGCAGTTCAAAATTAGGTAAAC-CTTAGCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5209484 494 +   6154872 CCACTATTAGCAATTGTCTGCAGAATGGTACCAAC--GCAAGCTAACTGTATCCAATAATTTTACCTATCTCAGCTTTGCCAAAGATCAACCTTGGTCTACGC--AGTT--AGCAGGTTAAAGTAAACTGACAGGTCTGATTTCCAAGGGTTCCAAACTTGGCTTCTCCATGCTTTCCCCAAA--------AGTAAGGGAA--TCTTAGCTCTCCGGGTGAGTTCCCA-C----TGCCATGCGCGGTTGATCCACCTCTACCTACTAGTTCTGGGGTGACAT-G-CTGGACAAGTTTAAGGGAAGTAACGTCAGCTCTACAGAAGAGGAGAGCACCAGCAGA------ACCAACTGT----GAATTCCAACAACCCTTACCAAGAGTTCAGCTCGTGCCTGTTCCCCCTGGGCCCGACGTCTCTTCTTTAAATCCTTCACTCTTTTTAAATGGTCGAGCTGGTTCTGGATTTGCTCCTGAGAAAACC-A-AAACAGATGGGCAGTTCAAAATTATGTAGAC-CTTAGCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74210953 495 + 122973662 CCACTATTAGCAATTGTCTGCAGCATGGTACCAAC--GCAAGCTAACTGTATCTAATAATTTTACCTATCTCAGCTTTGCCAAGGATCAACCTTGGTCTACGC--AGTT--AGCAGGTTAAAGTAAACTGACAGGTCTGATTTCCAAGAGTTCCAAACTTGGCTTCTCCATGCTTTCCCCAAA--------AGTAAGGGAATGTCTTAGTTCTCCAGGCGAGTTCCCA-C----TGCCATGTGCGGTTGATCCACCTCTACCTACAAGTTCT-GGGTGACAT-G-CTGGATAAGTTTAAGGGAATTAACATCAGCTCTACAGAAGAGGGGAGGACCAGCAGA------ACCAACTGT----GAATTCCAACAACCCTTACCAAGAGTTCAGCTCGTGCCTGTTCCCCCTGGGCCCGACGTCTCTTCTTTAAATCTTTCACTCTTTTTAAATGGTCGAGCTGGTTCTGGATTTGCTCCTGAGAAAAGC-A-AAACAGATGGGCAGTTCAAAATTAGGTAGAC-CTTAGCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29388577 495 + 172585720 CCACTATTAGTACTTGTCTGAAGAATGGTAACAAC--GCAAGCTAACTGTATCCAATAATTTTACCCATCTCAGCTTTGCCAAGGATCAACCTTGGTCTACGC--AGTT--AGCAGGTTAAACTATACTGACAGGTCTGATTTCCAAGGGTTCCAAACTTGGCTCCTCCACGCTTCCCCCAAA--------AGAAAGGGAATCTCTTAGTTCTCTGGGTGAGTTCCCA-C----TGCCATGTGCAGTTGATCCCCCTCTACCTACAGGTTCT-GGGTGACAT-G-CTGGACAAGTCTAAGGGAAGTAACATCAGCTCTACAGAAGAGGGGAGCACCAGCAGA------AGCGACTGT----GAATTCCAACAACCCTTACCAAGAGTTCAGCTCGTGCCTGTTCCCCTTGGGCCCGACGTCTCTTCTTTAAATCTTTCACTCTTTTTAAATGGTCAAGCTGGTTCTGGATTTGCTCCTGAGAAAAGC-A-AAACAGATGGGCAGTTCAAAACTAGGTAGAC-CTTAGCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29049448 495 - 170955103 CCACTATTAGCACTTGTCTGAAGAATGGTAACAAC--GCAAGCTAACTGTATCCAATAATTTTACCTATCTCAGCTTTGCCAAGGATCAACCTTGGTCTACGC--AGTT--AGCAGGTTAAACTATACTGACAGGTCTGATTTCCAAGGGTTCCAAACTTGGCTCCTCCACGCTTTCCCCAAA--------AGAAAGGGAATCTCTTAGTTCTCTGGGTGAGTTCCCA-C----TGCCATGTGCAGTTGATCCCCCTCTACCTACAGGTTCT-GGGTGACAT-G-CTGGACAAGTCTAAGGGAAGTACCATCAGCTCTACAGAAGAGGGGAGCACCAGCAGA------AGCGACTGT----GAATTCCAACAACCCTTACCAAGAGTTCAGCTCGTGCCTGTTCCCCTTGGGCCCGACGTCTCTTCTTTAAATCTTTCACTCTTTTTAAATGGTCAAGCTGGTTCTGGATTTGCTCCTGAGAAAAGC-A-AAACAGATGGGCAGTTCAAAACTAGGTAGAC-CTTAGCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2039864 495 -   2996164 CCACTATTAGCACTTGTCTGAAGAATGGTAACAAC--GCAAGCTAACTGTATCCAATAATTTTACCTATCTCAGCTTTGCCAAGGATCAACCTTGGTCTACGC--AGTT--AGCAGGTTAAACTATACTGACAGGTCTGATTTCCAAGGGTTCCAAACTTGGCTCCTCCACGCTTTCCCCAAA--------AGAAAGGGAATCTCTTAGTTCTCTGGGTGAGTTCCCA-C----TGCCATGTGCAGTTGATCCCCCTCTACCTACAGGTTCT-GGGTGACAT-G-CTGGACAAGTCTAAGGGAAGTAACATCAGCTCTACAGAAGAGGGGAGCACCAGCAGA------AGCGACTGT----GAATTCCAACAACCCTTACCAAGAGTTCAGCTCGTGCCTGTTCCCCTTGGGCCCGACGTCTCTTCTTTAAATCTTTCACTCTTTTTAAATGGTCAAGCTGGTTCTGGATTTGCTCCTGAGAAAAGC-A-AAACAGATGGGCAGTTCAAAACTAGGTAGAC-CTTAGCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1901449 495 -   2157725 CCACTATTAGCACTTGTCTGCAGAATGGTAACAAC--GCAAGCTAACTGTATCCAATAATTTTACCTATCTCAGCTTTGCCAAGGATCAACTTTGGTCTACGC--AGTT--AGCAGGTTAAACTATACTGACAGGTCTGATTTCCAAGGGTTCCAAACTTGGCTCCTCCACGCTTTCCCCAAA--------AGAAAGGGAATCTCTTAGTTCTCTGGGTGAGTTCCCA-C----TGCCATGTGCAGTTGATCCCCCTCTACCTACAGGTTCT-GGGTGACAT-G-CTGGACAAGTCTAAGGGAAGTAACATCAGCTCTACAGAAGAGGGGAGCACCAGCAGA------AGCAACTGT----GAATTCCAACAACCCTTACCAAGAGTTCAGCTCGTGCCTGTTCCCCTTGGGCCCGACGTCTCTTCTTTAAATCTTTCACTCTTTTTAAATGGTCAAGCTGGTTCTGGATTTGCTCCTGAGAAAAGC-A-AAACAGATGGGCAGTTCAAAATTAGGTAGAC-CTTAGCAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28345686 495 -  71996105 CCACTATTAGCACTTGTCTACAGAATAGTAAGAAC--GCAAGCTAACTGTATCCAATAATTTTACCTATCTCAGCTTTGCCAAGGATCAACCTTGGTCTACGC--AGTT--AGCAGGTTAAACTATACTGACAGGTCTGATTTCCAAGGGTTCCAAACTTGGCTCCTCCATGCTTTCCCCAAA--------AGTAAGGGAATCTCTTAGTTCTCTGGGTGAGTTCCCA-C----TGCCATGTGCAGTTGATCCCCCTCTACCTACAGGTTCT-GGGTGACAT-G-CTGGACAAGTTTAAGGGAAGTAACATCAGCTCTACAGAAGAGGGGAGCACCAGCAGA------AGCAACTGT----GAATTCCAACAACCCTTACCAAGAGTTCAGCTCGTGCCTGTTCCCCTTGGGCCCGACGTCTCTTCTTTAAATCTTTCACTCTTTTTAAATGGTCAAGCTGGTTCTGGATTTGCTCCTGAGAAAAGC-A-AAACAGATGGGCAGTTCAAAATTAGGTAGAC-CTTAGTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2032106 495 +   2316924 CCACTATTAGCACTTGTCTGCAGAATGGTAACAAC--GCAAGCTAACTGTATCCAATAATTTTACCTATCTCAGCTTTGCCAAGGATCAACCTTGGTCTACGC--AGTT--AGCAGGTTAAACTATACTGACAGGTCTGATTTCCAAGGGTTCCAAACTTGGCTCCTCCACGCTTTCCCCAAA--------AGAAAGGGAATCTCTTAGTTCTCTGGGTGAGTTCCCA-C----TGCCATGTGCAGTTGATCCCCCTCTACCTACAGGTTCT-GGGTGACAT-G-CTGGACAAGTCTAAGGGAAGTAACATCAGCTCTACAGAAGAGGGGAGCACCAGCAGA------AGCGACTGT----GAACTTCAACAACCCTTACCAAGAGTTCAGCTCGTGCCTGTTCCCCTTGGGCCCGACGTCTCTTCTTTAAATCTTTCACTCTTTTTAAATGGTCAAGCTGGTTCTGGATTTGCTCCTGAGAAAAGC-A-AAACAGATGGGCAGTTCAAAATTAGGTAGAC-CTTAGCAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1911723 495 -   3067355 CCACTATTAGCACTTGTCTGCAGAATGGTAACAAC--GCAAGCTAACTGTATCCAATAATTTTACCCATCTCAGCTTTGCCAAGGATCAACCTTGGTCTACAC--AGTT--AGCAGGTTAAACTATACTGACAGGTCTGATTTCCAAGGGTTCCAAACTTGGCTCCTCCATCCTTTCCCCAAA--------AGTAAGGGAATCTCTTAGTTCTCTGGGTGAGTTCCCA-C----TGCCATGTGCAGTTGATCCCCCTCTACCTACAGGTTCT-GGGTGACAT-G-CTGGACAAGTTTAAGGGAAGTAACATCAGCTCTACAGAAGAGGGGAGCACCAGCAGA------AGCGACTGT----GAATTCCAACAACCCTTACCAAGAGTTCAGCTCGTGCCTGTTCCCCTTGGGCCCGACGTCTCTTCTTTAAATCTTTCACTCTTTTTAAATGGTCAAGCTGGTTCTGGATTTGCTCCTGAGAAAAGC-A-AAACAGATGGGCAGTTCAAAATTAGGTAGAC-CTTAGCAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171434992 476 - 171630274 C--------------GTCTGCAGAATGGTAACAAA--GGGAGCTGACTGTACCCAATAAAGTTATCTATGTCAGTTTTGCCAAGAATCAACCGTGGTCTATGC--AGTT--AGCAGGTTAAGCTTTATTGACAGGTCTGGTTTCCAGGGGTTCCAAACTAGGCTCCTCCATCCTTTCCCCAAA--------AGTAAGGGAATCTCTCAGTTCTCAGGGTGAGATC-CC-C----CGCCATGTGCGGTTGATCCACCTCTACCTACAAGTTCT-GGATGACTT-G-CTGGAGAAGTTTAAGGGAAGTAA---CAGCTCTACAGAAGAGGGGAGCACCAGCAGA------AGCGACTGT----GAATTCGGACAACCCTTACCAAGAGTTCGGCTCGTGCCTGTTCCCCCTGGGCCCGACGTCTCTTCTTTAAATCTTTCACTCTTTTAAGGTGGTCCAGCTGGTTCTGAATCTGCTCCTGAGAAAAGC-A-AAACAGAT-GGCAGTTCAAAATTAAGTAGAC-CTTAGCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            260751 494 -    375362 C-TCTACAAGCACTTGTCTGCAGAATGGTACCAAA--GGAAGCTAACTGTACCCAATAATTTTATCTATCTCAGTTTCGGCAACAATAAACCGTGGTCTATGC--AGTT--AGCAGTTTAAACTTTATTGACAGGTCTGGTTTCCAGGGGTTCCAAACAAGGCTCCTCCATCCTTTCCCCAAA--------AGTAAGGGAATCTCTCAGTTCTCAGGATGAGTTCTCC-C----TGTCATGTGCGGTTGATCCACCTGTACCTACAAGTTCT-GGTTGACTT-G-CTGGAGAAGTTTAAGGGAAGTAACATCAGCTCTACAGAATAGGGGAGCACCCGCAGA------AGCGACTGT----GAATTCCAACAACCCTTACCAAGAGTTCAGCTCGTGCCTGTTCCCCCTGGGCCCGACGTCTCTTCTTTAAATCTTTCACTCTTTTAAGATGGTCCAGCTGGTTCTGGATCTGCTCCTGAGAAAAAC-A-AAACAAATGGGCAGTTCAAAATTAAGTTGAC-CTTAGCAT
i saiBol1.JH378348         C 0 I 293
s cebCap1.NW_016108108v1      258370 495 -    373274 CCTCTACACGCACTTGTCTGCAGAATGGTACCAAA--GAAAGCTAACTGTACCCAATAATTTTATCTATCTCAGTTTTGCCAAGAATCAACCGTGGCCTATGC--AGTT--AGCAGGTTAAGCTTTATTGACAGGTCTGGTTTCCAAGGGTTCCAAACTAGGCTCCTCCATCCTTTCCCCTAA--------AGTAAGGGAATCTCTCAGTTCTCAGGGTGAGTTCCCC-T----TGCCATGTGTGGTTGATCCACCTCTACCTACAAGTTCT-GGATGACTT-G-CTGGAGAAGGTTAAGGGAAGTAACATCAGCTCTACAGAAGAGGGGAGCACCAGCAGA------AGCAACTAT----GAATTCCAACAACCCTTACCAAGAGTTCGGCTCGTGCCTGTTCCCCCTGGGCCCGACGTCTCTTCTTTAAATCTTTCACTCTTTTAAGATGGTCCAGCTGGTTCTGGATCTGCTCCTGAGAAAAGC-A-GAACAGATGAGCAGTTCAAAATTAAGTAGAC-CTTAGCAT
i cebCap1.NW_016108108v1   C 0 I 305
s aotNan1.NW_018494050v1      189813 492 -    285216 CCTCTACTAGCACTTGTCTGCACGATGGTACCAAA--GGAAGCTAACTGTACCCAATAACTTTATCTATCTCAGTTTTGCCAAGAATCAACCGTGGTCTATGT--AGTT--AGCAGGTTAAACTTTATTGACAGGTCTGGTTTCCAGGGGTTCCAAACTAGGCTCCTCCATCCTTTCCCCAA------------AAGAGAATCTCTCAGTTCTCAGGGTGAGTTCCCC-C----TGCCATGTGCGGTTGATCCACCTCTACCTACAAGTTCT-GGATGACTT-G-CTGGAGAAGTTTAAGGGAAGAAACATCAGCTCTACAGAAGTGGGGAGCACCAGCAGA------AGCTACTGT----GAATTGCAACAACCCTTACCAAAAGTTCCGCTCGTGCCTGTTCCCCCTGGGCCCGACGTCTCTTCTTTAAATCTTTCACTCTTTTAAGATGGTCCAGCTGGTTCTGGATCTGCTCCTGAGAAAAGCAA-AAACAGATGGGCAGTTCAAAATTAAGTAGAC-CTTAGCAT
i aotNan1.NW_018494050v1   C 0 I 301
s proCoq1.NW_012147953v1      989192 508 -   3516910 CTACTATCAGCACCCGTCTGCAGGATGGTACCAAAAAGAAGGCTAACTGTACCCGAGAATTTTTCCTATCTCAGCTTTATCAAGGATCAACCCCAGTCTACACAAAGCC--AGTAGGTTAAATTTTACTGATAAGTCTAATTTCCAGAGGTTCCAAACTTGGCTCCCCTATCCTTTCCCTAAA--------AGTGGGGGAATCCCTTGGTTCTTCAGGTGAGCTCCTA-CTGAGTGCCATGTGGGCTCATTCCACCTGTACCTAGAAGTTCT-GGATGACCTAG-CTGGACAAGGTTAAGGGAAATAACATCAGGCCCACAGAAGAGAGAGTGACCAGCAGG------CACAATATTTACTGTATTCCAACAACCCTTACCAAGAGTTCAGCTCGTGCCTGCTCCCCCTGTGCCCGACGTCTCTTCTTTAAGTCTTTCACTCTTTTTAGATGGTCCAGTTGGTTCTGGATTTGTTCCTGAAAGAAGA-A-AAACAGATGGGCAGTTCAAGATTAGGCAGAC-CTCAGCAT
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1563027 500 -   2232465 CCACTATTAGCACCTGTCTTCACTATGGCACCACA---AAGGCTAATTGTGACCAAGAATTTTACCTATCTCAGCTTTGTCAAGGATCAACTTTGATCTACACAAAGCT--AGCAAAATAAATTTTACTGATAAGTCTAATTTCCAGAGTTTCCAAACTTGACTCCTCCATCC-TTCCCCAAA--------TGAGGGGAAATCCCTTGGTTCTCCAGGCTAAGTTCCA-CC---TGCCATGAGG--TTGTTCCACCTGTCCATAGAAGTTCT-GGGTGACATGG-CTGGATGAGGTTAAGGGAAGTGACATTAGCCCCATAGAAGAGGAAATGACCAGCAGG------CACAATGTTAACAGAATTCCAACAACCCTTACCAAGAGTTCAGCTCGTGCCTGCTCTCCCTGTGCCCGACGTCTCTTCTTTAAGTCTTTCACTCTTTTTAGATGGTCCAGCTGATTCTGTATTTGCTCCTGAAAAAAGA-A-AAACAGATGGTCAGTTCAAGATTAGGCAGAAGCTTAGCAT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25920563 480 +  26524999 CCACCATCACCATCTGTCTGCAGAATGGCACCAAG--GAAAGCTAGCTGTGCCTAGGAATTTCACCC---------------AGGATCAACTCTGATCTATAC--AAGTCAAGCAGGTTAAACTTT--TGGTAGGTCAGATCCACAGGGGTGCCATCCTCAGCTCTTCCATCTCTCCCTCCAA--------AATGTGGGAATCCCTTGGCTCTCCAGGAGAGTTCCCA-AA---TGCCACCCAGGGCTGTGTCACCCACACCTA--GGTTCT-GAGTAACCT-GACTGGATACAGTTAAG-----TGACTTCAGACTTACAGAGGACAGAGCCACCAACAAACATGATAGTACCTGT----GAATTCCCAGGACTCTTACCAGAAGTTCGGCTCGTGCCTGCTCCCCCTGTGCCCGCCGCCTCTTCTTTAAATCCTTGACTCTTTTCAGGTGGTCCAGCTGGTTCTGGATTTGCTCCTGAGAAAAGC-AGAAACAGCTGCACGGTTCAGGATTAGG--GAC-CTCGGCAT
i canFam3.chr35            I 1148 C 0
s dasNov3.JH561790             76146 423 -    302817 -----------AGCTGCCCACGA--------------GGAGGCCAG-GGTGCCCCAGAAT----CCCACCTCTGCTTCCTCAAGG--------------GCGA--AGCC-----AGGTGAAAC----CTGACAGGTGCCATCTCCAGGGGTG-GGAACTTGGCTCCTCCATCTTTTCCCCAAGTACGGGACAGGGCGGGCGATCCTGGGTTGTCCAGGTGTGTTCCCAGC----TGCCACGTGCGGCTGCTCTCCCTGCACCTGACGGTTCT-GGGTGGTCCGG-CCGGAAGGGGCT-------------------------------GGAGCAGAAGCAAG------GCTCCCTGC----CAACCGCAGCCACACTCACCAGGAGTTCTGCGCGCGCCTGCTCCCCTTGTGCCCGCCGCCTCTTCTTCAAGTCTTTCACTCTCTTTAGGTGGTCCAGTTGGTTCTGGATCTGCTCCTGGGGAAACC-A-TGACAGG-GGACAGCTGGAGATGAGGCAGGC-CTTGGCAT
i dasNov3.JH561790         C 0 C 0

a score=19000.000000
s hg38.chr6_GL000254v2_alt    187793 1 +   4827813 C
s panTro5.chr6              29175280 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29409341 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5209978 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74211448 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29389072 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29049943 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2040359 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1901944 1 -   2157725 C
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28346181 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2032601 1 +   2316924 C
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1912218 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171435468 1 - 171630274 C
i calJac3.chr4             C 0 I 289
s saiBol1.JH378348            261538 1 -    375362 C
i saiBol1.JH378348         I 293 C 0
s cebCap1.NW_016108108v1      259170 1 -    373274 C
i cebCap1.NW_016108108v1   I 305 C 0
s aotNan1.NW_018494050v1      190606 1 -    285216 C
i aotNan1.NW_018494050v1   I 301 C 0
s proCoq1.NW_012147953v1      989700 1 -   3516910 C
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1563527 1 -   2232465 C
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25921043 1 +  26524999 C
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             76569 1 -    302817 C
i dasNov3.JH561790         C 0 C 0

a score=118256.000000
s hg38.chr6_GL000254v2_alt    187794 7 +   4827813 AGCATGG
s panTro5.chr6              29175281 7 + 175400573 AGCATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29409342 7 + 173848474 AGCATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5209979 7 +   6154872 AGCATGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74211449 7 + 122973662 AGCATGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29389073 7 + 172585720 AGCATGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29049944 7 - 170955103 AGCATGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2040360 7 -   2996164 AGCATGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1901945 7 -   2157725 AGCATGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28346182 7 -  71996105 AGCATGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2032602 7 +   2316924 AGCATGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1912219 7 -   3067355 AGCATGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171435758 7 - 171630274 AGCATGG
i calJac3.chr4             I 289 C 0
s saiBol1.JH378348            261539 7 -    375362 AGCATGG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      259171 7 -    373274 AGCATGG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      190607 7 -    285216 AGCATGG
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      989701 7 -   3516910 AGCATGG
i proCoq1.NW_012147953v1   C 0 I 56
s otoGar3.GL873742           1563528 7 -   2232465 AATGTGG
i otoGar3.GL873742         C 0 I 3
s canFam3.chr35             25921044 7 +  26524999 GGCATGG
i canFam3.chr35            C 0 I 3
s dasNov3.JH561790             76570 7 -    302817 AGCATGG
i dasNov3.JH561790         C 0 C 0

a score=521880.000000
s hg38.chr6_GL000254v2_alt    187801 53 +   4827813 TACTTCTTATCACACATGGAGTCCACACACCTGATGCCAAGTCTCCAGTTGGC
s panTro5.chr6              29175288 53 + 175400573 TACTTCTTATCACACATGGAGTCCACACACGTGATGTCAAGTCTCTAGTTGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29409349 53 + 173848474 TACTTCTTATCACACATGGAGTCCACACACCTGATGTCAAGTCTCTAGTTGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5209986 53 +   6154872 TACTTCTTATCACACATGGAGTCCACACACCTGATGCCAAGTCTCTAGTTGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74211456 53 + 122973662 CACTTCTTATCACACATGGAGTCCACACACCTGATGCCAGGTCTCTAATTGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29389080 53 + 172585720 TACTTCTAATCACACATGGAGTCCACACACCTGATGCCAAGTATCCAGTTGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29049951 53 - 170955103 TACTTCTAATCACACATGGAGTCCACACACCTGATGCCAAGTATCCAGTTGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2040367 53 -   2996164 TACTTCTAATCACACATGGAGTCCACACACCTGATGCCAAGTATCCAGTTGGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1901952 53 -   2157725 TACTTCTAATCACACATGGAGTCCACACACCTGATGCCAAGTCTCTAGTTGGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28346189 53 -  71996105 TACTTCTAATCACACATGGAGTCCACACACCTGATGCCAAGTCTCTAGTTGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2032609 53 +   2316924 TACTTCTAATCACACATGGAGTCCACACACCTGATGCCAAGTCTCTAGTTGGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1912226 53 -   3067355 TACTTCTAATCACACACGGAGTCCACACACCTGATCCCAAGTCTCTAGTTGGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171435765 52 - 171630274 TCATTCTTATCACAGATGGAGTCCACACACCTGATGCCAAGT-CCTGTCTGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            261546 53 -    375362 TCATTCTTATCACAGATGGAATCCACACACCCGATGCCAAGTCCCTAGCTGGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      259178 53 -    373274 TCATTCTTATCACAGATGGAGTCCACACACACGATGCCAAGTCCCTAGCTGGT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      190614 53 -    285216 TCATTCTTATCACAGATGGAGTCCACACACCTGATGCCAAGTCCCTAGCTAGT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1563538 53 -   2232465 TTCTGCTTATCACACATGGAACACATATTCCTGATACCTAGTCCCTCTTTAGA
i otoGar3.GL873742         I 3 C 0
s canFam3.chr35             25921054 53 +  26524999 ACGTGCTTACCACGCACACAACCCACACTCCTGAGGCCAAGTCCCTGGTGAGC
i canFam3.chr35            I 3 C 0
s dasNov3.JH561790             76577  1 -    302817 --------------------------------------------C--------
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      989708 56 -   3516910 I

a score=391394.000000
s hg38.chr6_GL000254v2_alt    187854 35 +   4827813 GCTTGTCCTTAGGCCACACTGCCACCCACAAG----AGA
s panTro5.chr6              29175341 35 + 175400573 GCTTGTCCTTAGGCCACACTGCCACCCACAAG----AGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29409402 35 + 173848474 GCTTGTCCTTAGGCCACACTGCCACCCACAAG----AGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5210039 35 +   6154872 GCTTGTCCTTAGGCCACACTGCCACCCACAAG----AGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74211509 39 + 122973662 ACTTATCCTTAGGCCACACTGCCACCCACAAGAGAAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29389133 39 + 172585720 ACTTGTTCTCAGGCCACACTGCCACCCACAAGAGAAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29050004 39 - 170955103 ACTTGTTCTCAGGCCACACTGCCACCCACAAGAGAAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2040420 39 -   2996164 ACTTGTTCTCAGGCCACACTGCCACCCACAAGAGAAAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1902005 39 -   2157725 GCTTGTTCTCAGGCCACACTGCCACCCACAAGAGAAAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28346242 39 -  71996105 GCTTGTTCTCAGGCCACACTGCCACCCACAAGAGAAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2032662 37 +   2316924 GCTTGTTCTCAGGC--CACTGCCACCCACAAGAGAAAGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1912279 39 -   3067355 GCTTGTTCTCAGGCCACACTGCCACCCACAAGAGAAAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171435817 38 - 171630274 -CCTGTCCTCAGGCCACAGTGCCACCCACAAGATTAAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            261599 39 -    375362 GCCTGTCCTCAGGCCACAGTGCCACCCACAAGATTAACA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      259231 39 -    373274 GCTTGTCCTCAGGCCACAGTGCCACCCACAAGATTAAGA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      190667 39 -    285216 GCTTGTCCTCAGGCCACAGTGTCACCCACAAGATTAAGA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      989764 35 -   3516910 GCTTGTCCTTAGACCACACTGCCACCCACAGG----AGA
i proCoq1.NW_012147953v1   I 56 I 56
s otoGar3.GL873742           1563591 34 -   2232465 GCTTGTCCTCA-ACTACACTGCCACGCACAGA----AGA
i otoGar3.GL873742         C 0 I 4
s canFam3.chr35             25921107 30 +  26524999 ACCTGCCCCTGGACCACACTGCCATTCCCA---------
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             76578  6 -    302817 ----------------CACTGT-----------------
i dasNov3.JH561790         C 0 C 0

a score=271597.000000
s hg38.chr6_GL000254v2_alt    187889 30 +   4827813 CTCAGGGCGCAGGGGCAAACAAGCCACTCC
s panTro5.chr6              29175376 30 + 175400573 CTCAGGGCGCAGGGGCAAACAAGCCACTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29409437 30 + 173848474 CTCAGGGCGCAGGGGCAAACAAGCCACTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5210074 30 +   6154872 CTCAGGGCGCAGGGGCAAACAAGCCACTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74211548 30 + 122973662 CTCAGGGCGCAGGGGCCAACAAGCCACTCC
i nomLeu3.chr1a            C 0 M 100
s rheMac8.chr4              29389172 30 + 172585720 CTCAGGGCGCAGGGGCCAACAAGCCACTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29050043 30 - 170955103 CTCAGGGCGCAGGGGCCAACAAGCCACTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2040459 30 -   2996164 CTCAGGGCGCAGGGGCCAACAAGCCACTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1902044 30 -   2157725 GTCAGGGCGCAGGGGCCAACAAGCCACTCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28346281 30 -  71996105 CTCAGGGCGCAGGGGCCAACAAGCCACTCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2032699 30 +   2316924 GTCAGGGCGCAGGGGCCAACAAGCCACTCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1912318 30 -   3067355 CTCAGGGCGCAGGGGCCAACAAGCCACTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171435855 30 - 171630274 CCCAGGGCACAGGGGCCATCAAGCCTCGCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            261638 29 -    375362 -CCAGGGCATAGGGGCCATCAAGCCTCGCC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      259270 30 -    373274 CCCAGGGCACAGGGACCATCAAACCCCGCC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      190706 30 -    285216 CCCAGGGCACAGGGGCCATCAAGCCTCGCC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1563629 28 -   2232465 CCCAGAACACAGGG-CCACCACACCACTC-
i otoGar3.GL873742         I 4 C 0
s canFam3.chr35             25921137  9 +  26524999 -----GGGACAGGG----------------
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             76584  0 -    302817 C
e proCoq1.NW_012147953v1      989799 56 -   3516910 I

a score=400366.000000
s hg38.chr6_GL000254v2_alt    187919 45 +   4827813 TTTGGCAATCTGTGTCTATCTTAGCAGCCTGTGGCTTCAACCACT
s panTro5.chr6              29175406 45 + 175400573 TTTGGCAATCTGTGTCTATCTTAGCAGCCTGTGGCTTCAACCACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29409467 45 + 173848474 TTTGGCAATCTGTGTCTATCTTAGCAGCCTGTGGCTTCAACCACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5210104 45 +   6154872 TTTGGCAATCTGTGTCTATCTTAGCAGCCTGTGGCTTCAACCACT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29389202 45 + 172585720 TTTGGCAATTTGTGTCTATCttagcagcctgtcgcttcaaccact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29050073 45 - 170955103 TTTGGCAATTTGTGTCTATCttagcagcctgtcgcttcaaccact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2040489 45 -   2996164 TTTGGCAATTTGTGTCTATCttagcagcctgtcgcttcaaccact
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1902074 45 -   2157725 TTTGGCAATTTGTGTCTATCttagcagcctgtcgcttcaaccact
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28346311 45 -  71996105 TTTGGCAATTTGTGTCTATCttagcagcctgtcgcttcaaccact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2032729 45 +   2316924 TTTGGCAATCTGTGTCTATCttagcagcctgtcgcttcaaccact
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1912348 45 -   3067355 TTTGGCAATTTGTGTCTATCttagcagcctgtcgcttcaaccact
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171435885 45 - 171630274 TCTGGCATTTTGTGTCTATCTAAGCAGCCTGTGGCTTCAACCACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            261667 45 -    375362 TCTGGCACTTTGTGTCTATATGAGCAGCCTGTCGCTTCAACCACT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      259300 45 -    373274 TCTGGCACTTCGTGTCTATCTGAGCAGCCTGTGGCTTCAACCACT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      190736 45 -    285216 TCTGGCACTTTGTGTCTATCTGAGCAGCCTGTCGCTTCAACCACT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1563657 23 -   2232465 TTTGGCAATTTATGTGTATCTTA----------------------
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25921146 18 +  26524999 ----------------TATTACAGTACCC-----------CTGCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             76584 22 -    302817 -----------------------GCACCCTGAGGCTGCATCCCCT
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      989799 56 -   3516910 I
e nomLeu3.chr1a             74211578 100 + 122973662 M

a score=330260.000000
s hg38.chr6_GL000254v2_alt    187964 34 +   4827813 -CAGCTACCTCGTCAGGACTATTTGTGTCTATCTT
s panTro5.chr6              29175451 34 + 175400573 -CAGCTACCTCGTCAGGACTATTTGTGTCTATCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29409512 34 + 173848474 -CAGCTACCTCGTCAGGACTATTTGTGTCTATCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5210149 34 +   6154872 -CAGCTACCTCCTCAGGACTATTTGTGTCTATCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74211678 32 + 122973662 -CAGCTACCTCGTCAGGACTATT--TGTCTATCTT
i nomLeu3.chr1a            M 100 C 0
s rheMac8.chr4              29389247 34 + 172585720 -cagctacctcgtcAGGATTATTTGTGTCTATCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29050118 34 - 170955103 -cagctacctcgtcAGGATTATTTGTGTCTATCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2040534 34 -   2996164 -cagctacctcgtcAGGATTATTTGTGTCTATCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1902119 34 -   2157725 -cagctacctcgtcAGGATTATTTGTGTCTATCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28346356 34 -  71996105 -cagctacctcgtcAGGATTATTTGTGTCTATCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2032774 34 +   2316924 -cagctacctcgtcAGGATTATTTGTGTCTATCTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1912393 34 -   3067355 -cagctacctcgtcAGGATTATTTGTGTCTATCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171435930 34 - 171630274 -CAGCTACTGCGTCAGGACTATTTGTGTCTATCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            261712 34 -    375362 -GAGCTACTGCGTCAGGCCTATTTGTGTCTATCTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      259345 34 -    373274 -CAGCTACTGCGTGAGGACTATTTGTGTCTATCTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      190781 34 -    285216 -CAGCTACTGCGTCAGGACTATTTGTGTCTATCTT
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25921164 16 +  26524999 -CAGCT------------------GTGTTTATCTT
i canFam3.chr35            C 0 I 1
s dasNov3.JH561790             76606 14 -    302817 GGAGC-----CCTCAGGCC----------------
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      989799 56 -   3516910 I
e otoGar3.GL873742           1563680  0 -   2232465 C

a score=944787.000000
s hg38.chr6_GL000254v2_alt    187998 70 +   4827813 AAACAATGAGTCATCTACCTGTCCCTGGTAGGATATTGCATGACTTAGCGGAACTGTGACTGGAGTAGGA
s panTro5.chr6              29175485 70 + 175400573 AAACAATGAGTCATCTACCTGTCCCTGGTAGGATATTGCATGACTTAGCGGAACTGTGACTGGAGTAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29409546 70 + 173848474 AAACAATGAGTCATCTACCTGTCCCTGGTAGGATATTGCATGACTTAGCGGAACTGTGACTGGAGTAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5210183 70 +   6154872 AAACAATGAGTCATCTACCTGTCCCTGGTAGGATATTGCGTGACTTAGCGGAACTGTGACTGGAGTAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74211710 69 + 122973662 AAACAACGAGTCATCTACCTGTCCCTGGTAGGATATTGCATGAC-TAGCGGAACTGTGACTGGAGTAGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29389281 70 + 172585720 AAACAATGAATCATCTACCTGTTCCTGGTAGGATATCGCATGACTTAGCGGAACTGTGACTGGAGTAGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29050152 70 - 170955103 AAACAATGAATCATCTACCTGTCCCTGGTAGGATATCGCATGACTTAGCGGAACTGTGACTGGAGTAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2040568 70 -   2996164 AAACAATGAATCATCTACCTGTCCCTGGTAGGATATCGCATGACTTAGCGGAACTGTGACTGGAGTAGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1902153 70 -   2157725 AAACAATGAATCATCTACCTGTCCCTGGTAGGATATCGCATGACTTAGCGGAACTGTGACTGGAGTAGGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28346390 70 -  71996105 AAACAATGAATCATCTACCTGTCCCTGGTAGGATATCGCATGACTTAGTGGAACTGTGACTGGAGTAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2032808 70 +   2316924 AAACAATGAATCATCTACCTGTCCCTGGTAGGATATCGCATGACTTAGCGGAACTGTGACTGGAGTAGGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1912427 70 -   3067355 AAACAATGAATCATCTACCTGTCCCTGGTAGGGTATCACATGACTTAGCGGAACTGTGACTGGAGTAAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171435964 70 - 171630274 AAACAATGAGTCATCTACCTGTCCCTGGTCGGATATTGCATGACTTAGCGGAAATGTGACTGGAGCAGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            261746 70 -    375362 AAACAATGAGTCATCTACCTGTCCCTGGTCGGATATTGCATGACTTAGCGGAAATGTGGCTGGAGCAGGA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      259379 70 -    373274 AAACAATGAGTCATCTACCTGTCCCCGGTCAGATATTGCATGACTTAGTGGAAATGTGACTGGAGCAGGA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      190815 70 -    285216 AAACGATGAGTCATCTACCTGTCCCTGGTCGGATATTGCATGACTTAGCGGAAATGTGACTGGAGCAGGA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      989855 70 -   3516910 AAACAGTGAATCATCTACCTGTCCCTAGAAGGATACTGCATGGCTTAATGGAAAGGTGACTGGACTAGGA
i proCoq1.NW_012147953v1   I 56 I 62
s otoGar3.GL873742           1563680 67 -   2232465 AAACAGTGAGTCATCTACCTGTCCCTAGGAG---ACTACATGGCTTAATGGGAAAGTGACTAGATTAGGA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25921181 70 +  26524999 AACCGCTGGGTCACCTGCCCGTCCCTGGAAAGATACTGCATGGCTTGGTGGAAAGGTGAGTAGATGAGGA
i canFam3.chr35            I 1 C 0
s dasNov3.JH561790             76620 50 -    302817 --------AGTCTCCCACCTGCCTC----AGGACACTG--TGGCTTAGTGGAAAGGTGCCGGGA------
i dasNov3.JH561790         C 0 C 0

a score=790844.000000
s hg38.chr6_GL000254v2_alt    188068 87 +   4827813 GGCTTAGAACTATGTTGTATTGTAGCTCTTCCATATAGGTACACTGTGAAAGTGAC----------TTATTTCCCTCATGTGTGAAATGGGCAAACA
s panTro5.chr6              29175555 87 + 175400573 GGCTTACAACTATGTTGTATTGTAGCTCTTCCATATAGGTACACTGTGAAAGTGAc----------ttatttccctcatgtgtgaaatgggcaaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29409616 87 + 173848474 GGCTTACAACTATGTTGTATTGTAGCTCTTCCATATAGGTACACTGTGAAAGTGAc----------ttatttccctcatgtgtgaaatgggcaaaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5210253 87 +   6154872 GGCTTAGAACTATGTTGTATTGTAGCTCTTCCATATAGGCACACTGTGAAAGTGAC----------TTATTTCCCTCATGTGTGAAATGGGCAAACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74211779 87 + 122973662 GGCTTACAGCTATGTTGTATTGTAGCTCTTCCACATAGGCACACTGTTAACGTGACT-------TATTATTTCCCTCATGTGTGAAATGGGCA---A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29389351 90 + 172585720 GGCTTAGAGTTATGTTGTATTGTAGCTCTTCCACACAAGCATACTGTGAAAGTGACT-------TCTTATTTCCCTCATGTGTGAAATGGGCAAACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29050222 90 - 170955103 GGCTTAGAGTTATGTTGTATTGTAGCTATTCCACACAAGCATACTGTGAAAGTGACT-------Tcttatttccctcatgtgtgaaatgggcaaaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2040638 90 -   2996164 GGCTTAGAGTTATGTTGTATTGTAGCTCTTCCACACAAGCATACTGTGAAAGTGACT-------TCTTATTTCCCTCATGTGTGAAATGGGCAAACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1902223 89 -   2157725 GGCTTAGAGTTATGTTG-ATTGTAGCTCTTCCACACAAGGATACTGTGAAAGTGACT-------TCTTACTTCCCTCATGTGTGAAATGGGCAAACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28346460 90 -  71996105 GGCTTAGAGTTATGTTGTGTTGTAGCTCTTCCACACAAGCATACTGTGAAAGTGACT-------Tcttatttccctcatgtgtgaaatgggcaaaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2032878 89 +   2316924 GACTTAGAGTTATGTTG-ATTGTAGCTCTTCCACACAAGCATACTGTGAAAGTGACT-------TCTTACTTCCCTCATGTGTGAAATGGGCAAACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1912497 90 -   3067355 GGCTTAGAGTTATGTTGTATTGTAGCTCTTCCACACAAGCATACTGTGAAAGTGACT-------TCTTATTTCCTTCATGTGTGAAATGGGCAAACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171436034 87 - 171630274 GGCTGAGAGTTGTGTGGTACTGGAGCTTTTCCTCACAGGCATACTGCGAAGGTGAc----------ttattttcctcaggtgtgacatgggcaaaca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            261816 87 -    375362 GGCTGAGAGTTGTGTGGTACTGGAGCTTTTCCTCACAAGCATACTGCGAAAGTGAC----------TTGTtttcctcatgtgtgacatgggcaaaca
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      259449 87 -    373274 GGCTGGGAGTTGTGTGGTACTGGAGCTTTTCCTCACAGGTATACTGCGAAAGTGAc----------ttattttcctcatgtgtgacatgggcaaaca
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      190885 87 -    285216 GGCTGAGAGTTGTGTGGTACTGGAGCTTTTCCTCACAGGCATACTGCGAAAGTGAc----------ttattttcctcatgtgtgacatgggcaaaca
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1563747 61 -   2232465 AGCTTAAAG----------TTGTAGTTCTTCAACAGAAGCATACTAAGAAA--------------------------ATGGGTGACCTGGGTAAAGC
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25921251 95 +  26524999 AGCTCAGAGTTAAG--GTGTGGCTGGCTCTCCATGGAAGTATACCAAGAAAATGACTGAAGTTCTCTCGTTTTCTTGATGTGTGACCTGCACAAATA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             76670 67 -    302817 ---------------------------CTTCCAGAGGCGTGGACTGAGAACACGACTGAAC---TCTCGTCTTGGTCACGGGTGACACCGATGAACC
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      989925 62 -   3516910 I

a score=2803877.000000
s hg38.chr6_GL000254v2_alt    188155 242 +   4827813 CCATCTTCCCAACCTACTCAAGAGT---------------TCTCACCAGAGTGAGTGAAATAATATAGCTGAAAGGTC-CATAAATGTTAAGTGATTG----CACATGAATGTACTCATATTT-AAACACGGACATAATTGTGTA--CGCATTCCTGAAGCCCTC-AA-CGTACAGAAAATA-CACAGTATCATGGACTCCT--TGAAGGTCACCTTACAACTGTTTTATATGTAATACTTTGTTTCCACGTTT----CTGTTTAGCTGTGCCA
s panTro5.chr6              29175642 242 + 175400573 ccatcttcccaacctactcaagagt---------------tctcaccagagtgagtgaaataatatagctgaaaggtc-cataaatgttaagtgattg----cacatgaatgtaCTCGTATTT-AAACACGGACATAATTGTGTA--CGCATTCCTGAAGCCCTC-AA-CGTACAGAAAATA-CACAGTATCATGGACTCCT--TGAAGGTCACCTTACAACTGTTTTATATGTAATACTTTGTTTCCACGTTT----CTGTTTAGCTGTGCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29409703 242 + 173848474 ccatcttcccaacctactcaagagt---------------tctcaccagagtgagtgaaataatatagctgaaaggtc-cataaatgttaagtgattg----cacatgaatgtaCTCGTATTT-AAACACGGACATAATTGTGTA--CGCATTCCTGAAGCCCTC-AA-CGTACAGAAAATA-CACAGTATCATGGACTCCT--TGAAGGTCACCTTACAACTGTTTTATATGTAATACTTTGTTTCCACGTTT----CTGTTTAGCTGTGCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5210340 242 +   6154872 CCATCTTCCCAACCTACTCAAGAGT---------------TCTCACCAGAGTGAGTGAAATAATATAGCTGAAAGGTC-CATAAATGTTAAGTGATTG----CACATGAATGTACTCATATTT-AAACACGGACATAATTGTGTA--CGCATTCCTGAAGCCCTC-AA-CGTACAGAAAATA-CACAGTATCATGGACTCCT--TGAAGGTCACCTTACAACTGTTTTATATGTAATACTTTGTTTCCACGTTT----CTGTTTAGCTGTGCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74211866 246 + 122973662 CCATCTTCCCAACCTACTCAAGAGT---------------TCTCACCAAAGTGAGTGAAATAATACAGCTGAAAGGTC-CATAAATGTTAAGTGATTGATTACACATGAATGTACTCATATTT-AAACACGAACATAATTGTGTA--CGCATTCCTGAAGCCCTC-AA-CATACAGAAAATA-CACAGTATCATGGACTCCT--TGAAGGTCACCTTACAACTGTTTTATATGTAATACTTTGTTTCCACGTTT----CTGTTTAGCTGTGCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29389441 246 + 172585720 CCATCTTCCCAACCTACTCAAGAGT---------------TCTCACCAGAGTAAGTGAAAGAATATAGCTGAAAGGTC-CATAAATGTTAAGTGATTAATTACACATGAATGTATTCATATTT-AAACACGGACATAATTGTGTA--TGAATTCCTGAAGCCCTC-AA-CATACAGAAAATA-CACAGTATCATGGACTCCT--TGAAGGTCACCTTACAACTGTTTTATATGTAATATTTTGTTTCCACGTTT----CTGTTTAGCTGTGCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29050312 246 - 170955103 ccatcttcccaacctactcaagagt---------------tctcaccagagtaagtgaaagaatatagctgaaaggtc-cataaatgttaagtgATTAATTACACATGAATGTATTCATATTT-AAACACGGACATAATTGTGTA--TGAATTCCTGAAGCCCTC-AA-CATACAGAAAATA-CACAGTATCATGGACTCCT--TGAAGGTCACCTTACAACTGTTTTATATGTAATATTTTGTTTCCACGTTT----CTGTTTAGCTGTGCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2040728 246 -   2996164 CCATCTTCCCAACCTACTCAAGAGT---------------TCTCACCAGAGTAAGTGAAAGAATATAGGTGAAAGGTC-CATAAATGTTAAGTGATTAATTACACATGAATGTATTCATATTT-AAACACGGACATAATTGTGTA--TGAATTCCTGAAGCCCTC-AA-CATACAGAAAATA-CACAGTATCATGGACTCCT--TGAAGGTCACCTTACAACTGTTTTATATGTAATATTTTGTTTCCACGTTT----CTGTTTAGCTGTGCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1902312 246 -   2157725 CCATCTTCCCAACCTACTCAAGAGT---------------TCTCACCAGAGTGAGTGAAATAATATAGCTGAAAGGCC-CATAAATGTCAAGTGATTAATTACACATGAATGTATTCACATTT-AAACACGGACATAATTGTGTA--TGCATTCCTGAAGCCCTC-AA-CATACAGAAAATA-CACAGTATCATGGACTCCT--TGAAGGTCACCTTACAACTGTTTTATATGTAATATTTTGTTTCCACGTTT----CTGTTTAGCTGTGCCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28346550 245 -  71996105 gcagcttcccaacctactcaagagt---------------tctcaccagagtaagtgaaagaatatagctgaaaggtc-cataaatgttaagtgATTAATTACACATGAATGTATTCATATTT-AAACACGGACATAATTGTGTA--TGAATTCCTGAAGCCCTC-AA-CATACAGAAAATA-CACAGTATCATGGACTCCC--TGAAGGTCACCTTACAACTGTTTT-TATGTAATATTTTGTTTCCACGTTT----CTGTTTAGCTGTGCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2032967 246 +   2316924 CCATCTTCCCAACCTACTCAAGAGT---------------TCTCACCAGAGTGAGTGAAATAATATAGCTGAAAGGCC-CATAAATGTCAAGTGATTAATTACACATGAATGTATTCATATTT-AAACACGGACATAATTGTGTA--TGCATTCCTGAAGCCCTC-AA-CATACAGAAAATA-CACAGTATCATGGACTCCT--TGAAGGTCACCTTACAACTGTTTTATATGTAATATTTTGTTTCCACGTTT----CTGTTTAGCTGTGCCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1912587 242 -   3067355 CCATCTTCCCAATCTACTCAAGAGT---------------TCTCACCAG----AGTGACAGAAAATAGCTGAAAGGTC-CATAAATGTTAAGTGATTAATTACACATGAATGTATTCATATTT-AAACACGGACGTAATTGTGTA--TGAATTCCTGAAGCCCTC-AA-CATACAGAAAATA-CACAGTATCATGGACTCCT--TGAAGGTCACCTTACAACTGTTTTATATGTAATATTTTGTTTCCACGTTT----CTGTTTAGCTGTGCCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171436121 239 - 171630274 ccatcttcccaacctgctcaagatg---------------tatcaccag--tgagtgaaataatatagctgaaaggtc-cattaatgttaagggatta----cacatgaatgtaCTCCCA-TT-AAACAGGGACATAATTGTGTA--TGCATTACTGAAGCCCTC-AA-GATACAAATAAT-----TGTGTCATGGACTCCT--TGAAGGGCGCCTTACAAGTGTTTTATTTGGAACACTTTGTCTGCACGTTACTGTTTGTTTAGCTGTGCCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            261903 240 -    375362 ccatcttcccaacctgctcaagatg---------------tatcaccag--ggagtgaaataacatagctgaaaggtc-cattaatgttaagtgatta----cgcatgaatgtaCTCACAGTT-AAACACGGACCTAATTGTGTA--TTCATTTCTGAAGCCCTC-AA-GATACAAAAAATA-CACAGTATCACGGACTCCT--TGCAGGTCGCCTTACGAGTGTTTTATATGTAGCACTTTGTCTCCACGTCA----GTGTTCAGCTATGCCA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      259536 232 -    373274 ccatcttcccatcctgctccagacg---------------tattaccag--tgagtggaataatatagctgaaaggtc-cattaatgttaagtgatta----cacatgaatgtaCTCACATTT-AAACAAGGAC----------A--TGCATTCCTGAAGCCCTC-AA-GATACAAAAAACA-CACAGTATCATGGACTTGTAAGGCAGGTCGCCTTACAAGTGCTTTACATGTAACACTTTGTCTCCACGTTA----CTGATGAGCTGTGCCG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      190972 240 -    285216 ccatcttcccaacctgctcaagatg---------------tatcagcag--tgagcgaaataatatagctgaaaggtc-cattaatgttaagtgatta----cgcatgtaTGTACTCACATTT-AAACACGGACATAATCGTGTA--TGCATTTCTGAAGCCCTC-AA-GATACAAAAAATA-CACAGTATCATGGACTCCT--TGAAGGTCGCCTTACAAGTGTTTTATATGTAACACTTTGTCTCCACGTTA----CTGTTTAGCTGCGCCG
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      989987 245 -   3516910 CCACCTTCCCAACCTACTCCAGAGT---------------TATCACCAGAGTGAGTAAAAC--TATAGTTCAAAGCTC-CATAATTGTTAAGTGATTAATTATGCATGAATGCACTCACATTT-AAACAGGGACATAATTGTGTG--CATATTCCTGCAGCCCTCAAA-TATACAGAAAATA-CACAGCATCCTAGACTCCT--TGAATGTTGTCTTAAAACTGTTTTATATGCAATACTTCATTTCCATGTTA----TTGTTTAGTTGTGCCA
i proCoq1.NW_012147953v1   I 62 I 112
s otoGar3.GL873742           1563808 209 -   2232465 CCACTTTCCCAGCCTACTCAAGAGC---------------TG-----------------------------AAAGCTC-CATAAATGTTAAGTGATTAATTATGCACGAATGCACTCACATTTAAAACATGGAC----TTGTG------TATTTCTGCAGCTCTCAAA-TACACAGAAAATA-CACAGTATC--AGACTCCT--TGAATGTTGCCTTAAAACTGTTCTATATGTAGTACTTTGTTTCCATATTA----TTGTCTACTTGTATCA
i otoGar3.GL873742         C 0 I 8
s canFam3.chr35             25921346 252 +  26524999 CCACCTTCCCAAGCTACTGGAGTGTGAGTGAACTCCAGTACACTGCCAGTATGAGTGAAATAATATATCTGAAAGTAC-CACAAGTGTGAAGTGACTACTTATGCACAGATGTACTCACGTTT-CAACA--GACCTAACTCTGCACCTGTCCTTCTGCAGCCTGC-AAGCACACAGA-ACCG-CGCCGCACGCTAG-CTCCT--CCAATGTAG--TTACAACTGTTGGAGTCG--ATACTTTGTTTCCATGTCA----CTGTT----TGTGCCA
i canFam3.chr35            C 0 I 15
s dasNov3.JH561790             76737 232 -    302817 ----CCTTCCCCCCTACCCGAGGTC---------------TGTCAGGAGGTTAAGCCAGTCAACACGGGTGAAAAACAGCATAACTGGGAAGTGATGAGTGAGGCATG------------TTT-CAACACGCACCTAAGTGTACC--TGGATTCCTGCATCCCTCCAA-CACGTGGGCGCTACCGCGGCGCCACGCAGGCCT--TCGGCGCTGCCTTACAACTGCTCTGGAGTTCAGACTTTGTTTCCCTGCCA----GTGCTTGGCTCCACG-
i dasNov3.JH561790         C 0 C 0

a score=204208.000000
s hg38.chr6_GL000254v2_alt    188397 17 +   4827813 GTTCACAAAGGGCT--CTG
s panTro5.chr6              29175884 17 + 175400573 GTTCACAAAGGGCT--CTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29409945 17 + 173848474 GTTCACAAAGGGCT--CTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5210582 17 +   6154872 GTTCACAAAGGGCT--CTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74212112 17 + 122973662 GTTCACAAAGGGCT--CTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29389687 17 + 172585720 GTTCACAGAGGGCT--CTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29050558 17 - 170955103 GTTCACAGAGGGCT--CTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2040974 17 -   2996164 GTTCACAGAGGGCT--CTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1902558 17 -   2157725 GTTCACAGAGGGCT--CTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28346795 17 -  71996105 GTTCACAGAGGGCT--CTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2033213 17 +   2316924 GTTCACAGAGGGCT--CTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1912829 17 -   3067355 GTTCACAGAGGGCT--CTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171436360 17 - 171630274 GTTAGCAGAGGGCT--CTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            262143 17 -    375362 GTTAGCAGAGGGCT--CCG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      259768 17 -    373274 GTCGGCAGACGGCT--CTG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      191212 17 -    285216 GTTAGCAGAGGGCT--CTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1564025 17 -   2232465 ttttacagagggtt--cag
i otoGar3.GL873742         I 8 C 0
s canFam3.chr35             25921613 19 +  26524999 GTTCACAAAGGGCTACCCA
i canFam3.chr35            I 15 C 0
s dasNov3.JH561790             76969 17 -    302817 GCCCACAAAGGGCA--CGG
i dasNov3.JH561790         C 0 I 80
e proCoq1.NW_012147953v1      990232 112 -   3516910 I

a score=763964.000000
s hg38.chr6_GL000254v2_alt    188414 88 +   4827813 TGAGTCACATGATTCCA--CAATATTCCTCATAACTGTGTTATCTCctgagtctcagagtggttaagtgacttactccagCAGCGAAAAG
s panTro5.chr6              29175901 88 + 175400573 TGAGTCACATGATTCCA--CAATATTCCTCATAACTGTGTTATCTCctgagtctcagagtggttaagtgacttactccagCAGCGAAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29409962 88 + 173848474 TGAGTCACATGATTCCA--CAATATTCCTCATAACTGTGTTATCTCctgagtctcagagtggttaagtgacttactccagCAGCGAAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5210599 88 +   6154872 TGAGTCACATGATTCCA--CAATATTCCTCATAACTGTGTTATCTCctgagtctcagagtggttaagtgacttactccagCAGCGAAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74212129 88 + 122973662 TGAGTCACATGATTCCA--CAATATTCGTCATAACTGTGTTATCTCctgagtctcagagtggttaagtgacttactcaagTAGCGAAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29389704 82 + 172585720 TGCATCACATGATTCCA--TAATCTTCCTCATAAC--TGTTATCTCCTGAGTCTCAGAGTGGTTAAATGACTTA----AGCAGTGAAGAG
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              29050575 82 - 170955103 TGCATCACATGATTCCA--TAATCTTCCTCATAAC--TGTTATCTCCTGAGTCTCAGAGTGGTTAAATGACTTA----AGCAGTGAAGAG
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     2040991 82 -   2996164 TGCATCACATGATTCCA--TAATCTTCCTCATAAC--TGTTATCTCCTGAGTCTCAGAGTGGTTAAATGACTTA----AGCAGTGAAGAG
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012001495v1     1902575 82 -   2157725 TGCATCACATGATTCCA--CAATCTTCCTCATAAC--TGTTATCTCCTGAGTCTCAGAGTGGTTAAATGACTTA----AGCAGTGAAGAG
i cerAty1.NW_012001495v1   C 0 I 1
s chlSab2.chr17             28346812 82 -  71996105 TGCATCACATGATTCCA--CAATCTTCCTCATAAC--TGTTATCTCCTGAGTCTCAGAGTGGTTAAATGACTTA----AGCAGTGAAGAG
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012104165v1     2033230 82 +   2316924 TGCATCACATGATTCCA--CAATCTTCCTCATAAC--TGTTATCTCCTGAGTCTCAGAGTGGTTAAATGACTTA----AGCAGTGAAGAG
i manLeu1.NW_012104165v1   C 0 I 1
s colAng1.NW_012115566v1     1912846 82 -   3067355 TGCATCACATGATTCCA--CAATCTTCCTCATAAC--TGTTATCTCCTGAGTCTCAGAGTAGTTAAATGATTTA----AGCAGTGAAGAG
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chr4             171436377 88 - 171630274 AGCGTCCTGTGATTCCA--CGTTCTTCCTCATGACTGTGTTATCTCCTGGGTCCTAGAGTAGTTAAACGACTTACTCAAGCACCAAAGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            262160 88 -    375362 TGCGTCCTATGATTCCA--CATTCTTCCTCATAACTGTGTTACCTCCTGGGTCCCAGAGTGGTTAAACGACTCACTCAAGCAGCAAAGAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      259785 88 -    373274 TGCGTCCCATGATTCCA--CATTCTTCCTCATAACTGTGTTATCTCCTGGGTCCCAGAGTGTTTAAACGACTTACTCAGGCAGCAAAGAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      191229 87 -    285216 T-CATCCTATGATTCCA--CATTCTTCCTCATAACTGTGTTATCTCCTGGGTCCCAGGGTGGTTAAACGACTTACTCAAGCAGCAAAGAG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1564042 76 -   2232465 cacatcatatgatttcatttaatcttcataataat--tctTGTCTCCTAACTTTCAGAGTGGTTAAATGACTTC----AGCA--------
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25921632 69 +  26524999 CTCATTTCTT--TTGTC--TGAGCTTCCTGGTAGGTGTGCTGTCT----AGAGTCGGGGCGGCT----GACCTG----GGCAGTG-----
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             76986 80 -    302817 I
e proCoq1.NW_012147953v1      990232 112 -   3516910 I

a score=748203.000000
s hg38.chr6_GL000254v2_alt    188502 63 +   4827813 CTGTTCTTTTCTGTGAGTTTCTAGACCAGGACGGATTGCAGGAAAGTGCTGGGG-AAATGCTTA
s panTro5.chr6              29175989 63 + 175400573 CTGTTCTTTTCTGTGAGTTTCTAGACCAGGACGGATTGCAGGAAAGTGCTGGGG-AAATGCTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29410050 63 + 173848474 CTGTTCTTTTCTGTGAGTTTCTAGACCAGGACGGATTGCAGGAAAGTGCTGGGG-AAATGCTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5210687 61 +   6154872 CTGTTCTTTTC--TGAGTTTCTAGACCAGGACGGATTGCAGGAAAGTGCTGGGG-AAATGCTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74212217 63 + 122973662 CTGTTCTTTTCTGTGAGTTTCTAGACCAGGACGGATTGCAGGAAAGTGCTGGGG-AAATGCTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29389787 63 + 172585720 CTGTTCTTTTCTGTGAGTTTCTAGACCAGGACGTATTGCAGGAAAGTGCTGGGG-AAATGCTTA
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              29050658 63 - 170955103 CTGTTCTTTTCTGTGAGTTTCTAGACCAGGACGTATTGCAGGAAAGTGCTGGGG-AAATGCTTA
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     2041074 63 -   2996164 CTGTTCTTTTCTGTGAGTTTCTAGACCTGGACGTATTGCAGGAAAGTGCTAGGG-AAATGCTTA
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012001495v1     1902658 63 -   2157725 CTATTCTTTTCTGTGAGTTTCTAGACCAGGACGTATTGCAGGAAAGTGCTGGGG-AAATGCTTA
i cerAty1.NW_012001495v1   I 1 C 0
s chlSab2.chr17             28346895 63 -  71996105 CTGTTCTTTTCTGTGAGTTTCTAGACCAGGACGTATTGCAGGAAAGTGCTGGGG-AAATGCTTA
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012104165v1     2033313 63 +   2316924 CTATTCTTTTCTGTGAGTTTCTAGACCAGGACGTATTGCAGGAAAGTGCTGGGG-AAATGCTTA
i manLeu1.NW_012104165v1   I 1 C 0
s colAng1.NW_012115566v1     1912929 63 -   3067355 CTGTTCTTTTCTGTGAGTTTCTAGACCAGGACGTATTGCAGGAAAGTGCTGGAG-AAATGCTTA
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chr4             171436465 64 - 171630274 CTGTTATTTTCCGTGAGCTTCTAGAGCCGGGCAGACTGAACGAAAGTGCTAGAGAAAATGCTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            262248 63 -    375362 CTGTTATTTTCTGTGAGCTTCCAGAGCAGGGCAGACTGCACGGAAGTGTTAGAG-AAACGCTTA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      259873 63 -    373274 CTGTTATTTTCTGTGAGCTTCCAGAGCAGGGCAGACTGCACGGAAGAGCTGGAG-AAACGCTTA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      191316 63 -    285216 CTGTTATTTTCTGTGAGCTTCTAGAGCAGGGCAGACTGCACGAAAGTGCTAGAG-AAACGCTTA
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      990344 59 -   3516910 CTGTCCTTTTCTGTGAGTTTCTAGAACAGG----ATTACAGGAAAGTGCTGTGG-AAATGCTTA
i proCoq1.NW_012147953v1   I 112 I 211
s otoGar3.GL873742           1564118 59 -   2232465 CTGTTCTTTTCTGTGAGCTTCTAGAACAAG----ATTACAAGAAAGTGTTGTGG-GAATGCTTA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25921701 51 +  26524999 -----------CGCGAGCTTCCAGGGCAGGACGGAGCACAGGGAAGTGCTGG-G-AAATGCCTG
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             76986 80 -    302817 I

a score=502419.000000
s hg38.chr6_GL000254v2_alt    188565 60 +   4827813 TAGACTAAGGAATGGGCAT----------------AAGTCAGTTA------------------------------ACGTCCAACTGCGTTTT-GTCTGA----------GAGCCGAT
s panTro5.chr6              29176052 60 + 175400573 TAGACTAAGGAATGGGCAT----------------AAGTCAATTA------------------------------ACGTCCAACTGCGTTTT-GTCTGA----------GAGCCGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29410113 60 + 173848474 TAGACTAAGGAATGGGCAT----------------AAGTCAGTTA------------------------------ACGTCCAACTGCGTTTT-GTCTGA----------GAGCCGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5210748 60 +   6154872 TAGACTAAGGAATGGGCGT----------------AAGTCAGTTA------------------------------ACGTCCAACTGCGTTTT-GTCTGA----------GAGCCGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74212280 60 + 122973662 TGGACCAAGGAATGGGCAT----------------AAATCAGTTA------------------------------ACGTCCAACTGCGTTTT-GTCTGA----------GAGCCGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29389850 60 + 172585720 TAGACCAAGGAATGGGCAT----------------CGGTCAGTTA------------------------------ATGTCCGACTGCGTTTT-GTCTGA----------CAGCCGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29050721 60 - 170955103 TAGACCAAGGAATGGGCAT----------------CGGTCAGTTA------------------------------ATGTCCGACTGCGTTTT-GTCTGA----------CAGCCGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2041137 60 -   2996164 TAGACCAAGGAATGGGCAT----------------CGGTCAGTTA------------------------------ATGTCCGACTGCGTTTT-GTCTGA----------CAGCCGAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1902721 60 -   2157725 TAGACTAAGGAATGGGCAT----------------CAGTCAGTTA------------------------------ATGTCCGACTGCGTTTT-GTCTGA----------CAGCCGAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28346958 60 -  71996105 TAGACTAAGGAATGGGCAT----------------CAGTCAGTTA------------------------------ATGTCCGACTGCGTTTT-GTGTGA----------CAGCCGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2033376 56 +   2316924 TAGACTAAGGAATGGGCA--------------------TCAGTTA------------------------------ATGTCCGACTGCGTTTT-GTCTGA----------CAGCCGAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1912992 60 -   3067355 TAGACTAAGGAATGGGCAT----------------CAGTCAGTTA------------------------------ATGTCCGACTGCGTTTT-GTCTGA----------CAGTCGAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171436529 59 - 171630274 TACACTAAGGAATGGCCGT----------------GAGTCAGTGA------------------------------ACGTCTGAGCGCGTTTT--GTTGC----------GAGCCGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            262311 61 -    375362 GAGACTAAGGAATGGCCGT----------------TAGTCAGCTA------------------------------ACGTCTGAGCGCGTTTTTGTCTGC----------GAACCGGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      259936 61 -    373274 TAGACTAAGGAATGGCCGT----------------GGGTCAGTTA------------------------------ACGTCTGAGCGCGTTTTTGTCTGC----------GAACCGGT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      191379 61 -    285216 TAGACTAAGGAATGGCCGT----------------GAGTCAGTTA------------------------------ACGTCTGAGCGCGTTTTTGTCTGC----------GAGCCGGT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1564177 86 -   2232465 CAAACTAATTGATGGGAGTCTGCTTGATGTGTATACAGTCAGTTA------------------------------ACATCAGAATGTGTTTT-GTCTGAACTTGACTGGAAGCTGAG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25921752 90 +  26524999 CAGGCTGCGCGCTGGGCAC----------------CTGCCAGTGGTGCACACAGCCCGGGGTACCTGCTGCTGGTGCGCCCAGTTTGAGCTC-ATCCGA----------GATCCGAC
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             76986 80 -    302817 I
e proCoq1.NW_012147953v1      990403 211 -   3516910 I

a score=946011.000000
s hg38.chr6_GL000254v2_alt    188625 115 +   4827813 GGGAGTAAGAGTG----TCTGCAGCTTGTCGATGTGTACGCGGTTTTATGCACTTCTTTTAAACTGTCA---------AAAG-----------GA--------------TGTCT--------CCGTGTACAATGTGTCCGTGAGACAGGTAACATGGGGGT
s panTro5.chr6              29176112 115 + 175400573 GGGAGTAAGAGTG----TCTGCAGCTTGTCGATGTGTACGCGGTTTTATGCACTTCTTTTAAACTGTCA---------AAAG-----------GA--------------TGTCG--------CCGTGTACAATGTGTCCGTGAGACAGGTAACATGGGGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29410173 115 + 173848474 GGGAGTAAGAGTG----TCTGCAGCTTGTCGATGTGTACGCGGTTTTATGCACTTCTTTTAAACTGTCA---------AAAG-----------GA--------------TGTCG--------CCGTGTACAATGTGTCCGTGAGACAGGTAACATGGGGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5210808 115 +   6154872 GGGAGTAAGAGTG----TCTGCAGCTTGCCGATGTGTACGCGGTTTTATGCACTTCTTTTAAACTGTCA---------AAAG-----------GA--------------TGTCT--------CCGTGTACAATGTGTCCGTGAGACAGGTAACATGGGGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74212340 112 + 122973662 GGGAGTACGAGTG----TCTGCAGCTTGTCGATGTGCACGCGGTTTTATGCA---CTTTTATACTGTCA---------AAAG-----------GA--------------TGTCT--------TCGTGTACCATGTGTCCGTGAGACAGGAAACATGGGGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29389910 117 + 172585720 GAGAGTACATGTGTC--TCTACAGCTCGTCGATGTGCAAGCGATTTTATGCACTTCTTTTATACTGTCA---------AAAG-----------CA--------------TGTCT--------CCGTGTACAATGTGTCCGTGAGACAGGAAACATGGGGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29050781 117 - 170955103 GAGAGTACATGTGTC--TCTACAGCTCGTCGATGTGCAAGCGATTTTATGCACTTCTTTTATACTGTCA---------AAAG-----------CA--------------TGTCT--------CCGTGTACAATGTGTCCGTGAGACAGGAAACATGGGGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2041197 117 -   2996164 GAGAGTACATGTGTC--TCTACAGCTCGTCGATGTGCAAGCGATTTTATGCACTTCTTTTATACTGTCA---------AAAG-----------CA--------------TGTCT--------CCGTGTACAATGTGTCCGTGAGACAGGAAACATGGGGGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1902781 117 -   2157725 GAGAGTACATGTGTC--TCTGCAGCTCGTCGATGTGCACGCGATTTTATGCACTTCTTTCATACTGTCA---------AAAG-----------CA--------------TGTCT--------CCGTGTACAATGTGTCCGTGACACAGGAAACATGGGGGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28347018 117 -  71996105 GAGAGTACATGTGTC--TCTACAGCTCGTCGATGTGCAAGCGATTTTATGCGCTTCTTTTATACTGTCA---------AATG-----------CA--------------TGTCT--------CCGTGTACAATGTGTCCGTGAGACAGGAAACATGGGGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2033432 117 +   2316924 GAGAGTACATGTGTC--TCTGCAGCTCGTCGATGTGCACGCGATTTTATGCACTTCTTTCATACTGTCA---------AAAG-----------CA--------------TGTCT--------CCGTGTACAATGTGTCCGTGACACAGGAAACATGGGGGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1913052 117 -   3067355 GAGAGTACATGTGTC--TCTGCAGCTCGTCGATGTGCACGCGATTTTATGCACTTCTTTTATACTGTCA---------AAAG-----------CA--------------TGTCT--------CTGTGTACAATGTGTCCGTGAGAGAGGAAACATGGGGGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171436588 112 - 171630274 GGGAGCG-GAGCGTG--TCCCCAGCTTGCGGATGTGCGCG-GGTTGTATGCGCTTCTTTCATTCTGTCA---------AAAG----------------------------GTCT--------CCGTGTACAACGCGCCCGCGAGGCAGGAAACTCGGGGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            262372 112 -    375362 GGGAGCG-GAGCGTG--TTCCCAGCTCGTGGATGTGCGCG-GGTTGTATGCGCTTCCTTCATTCTGTCT---------AAAG----------------------------GTCT--------CCGTGTACAACGCGCCCGAGAGGTAGGAAACTCGGGGGC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      259997 112 -    373274 GGGAGCG-GAGCGTG--TTCCCAGCTTGTAGATGTGCGCG-GGTTGTATGCGCTTCTTTCATTCTGTCA---------AAAG----------------------------GCCT--------CCGAGTACAACGCGCCCGCGAGGCAGGAAACTCGGGGAC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      191440 112 -    285216 GGGAGCG-GAGCGTG--TCCCCAGCTTGCGGATGTGCGCG-GGTTGTATGCGCTTCTTTCATTCTGTCG---------AAAG----------------------------GTTT--------CCGTGTACAACGCGCCCGCGAGGCAGGAAACTCGGGGGC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1564263 131 -   2232465 GGGAGTGAGAGTGTC--TCTGAAGCTTGTTGACGTGTACGTGGTTTTCCACACTTCTTTTATATTGTCA---------AAAA-----------GAGGTTCTTCATGGGCTGTGT--------CTATGTACAATGTGGCCGTGAGCTGGGATACACAGGGGC
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25921842 118 +  26524999 CGGAGCGTGAGCG-------------TGTCCGTGTGCGCGCGCTTTTGGGCATATCCTTCTTCCAGTCAGGCAGGGACGGAG-----------GG--------------TGTCTCTCTCgggccgtgggccgtg-ggccgtgggccCGGGGGC----GGGT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             77066 127 -    302817 GGGAGGAGGCGCGTCGGGTTCGGGTTTGTGGGTGTGTAC-CGGCCTTCCGTGCGCCTTTCCCGTGCCCG---------GGGGGTGCCCCAGCAGA--------------CACCT--------TCCCGCACCCCGTCTCCAGGCGCC--GCCCCACGGGGCC
i dasNov3.JH561790         I 80 C 0
e proCoq1.NW_012147953v1      990403 211 -   3516910 I

a score=350777.000000
s hg38.chr6_GL000254v2_alt    188740 28 +   4827813 AAACA-----------GAGAAAAGAGAGTGGGGGTGGGG
s panTro5.chr6              29176227 28 + 175400573 AAACA-----------GAGAAAAGAGAGTGGGGGTGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29410288 28 + 173848474 AAACA-----------GAGAAAAGAGAGTGGGGGTGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5210923 28 +   6154872 AAACA-----------GAGAAAAGAGAGTGGGGGTGGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74212452 28 + 122973662 AAATA-----------GAGAAAGGAGAGTGGGGGTGGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29390027 28 + 172585720 ACACA-----------GAGAAAGGAGAGTGGGGGTGGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29050898 28 - 170955103 ACACA-----------GAGAAAGGAGAGTGGGGGTGGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2041314 28 -   2996164 ACACA-----------GAGAAAGGAGAGTGGGGGTGGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1902898 28 -   2157725 AAACA-----------GAGAAAGGAGAGTGGGGGTGGGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28347135 28 -  71996105 ACACA-----------GAGAAAGGAGAGTGGGGGTGGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2033549 28 +   2316924 AAACA-----------GAGAAAGGAGAGTGGGGGTGGGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1913169 28 -   3067355 AAACG-----------GAGAAAGGGGAGTGGGGGTGGGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171436700 28 - 171630274 ACACG-----------GAGCGAGGAGAGTGGGGGTGGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            262484 28 -    375362 AAACG-----------GAGCGAGGGGAGTGGGGGTGGGG
i saiBol1.JH378348         C 0 M 923
s cebCap1.NW_016108108v1      260109 28 -    373274 AAACG-----------GAGCGAGGAGAGTGGGGGTGGGG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      191552 28 -    285216 ACACG-----------GAGCGAGGAGAGTGGGCGGGGGG
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      990614 28 -   3516910 AAATA-----------GAGAAAGGAGAGTTGGGATGGGG
i proCoq1.NW_012147953v1   I 211 C 0
s otoGar3.GL873742           1564394 28 -   2232465 AAACA-----------GAGAAAAAACAGTGGGGGTGGGG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25921960 39 +  26524999 AAACACAGGGGCCCCCGGGAAGGGCGGGTGGGGGCGGGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             77193 26 -    302817 ------------CGGCGGGGAAAGGCAGTGGGGTGGGG-
i dasNov3.JH561790         C 0 C 0

a score=1957955.000000
s hg38.chr6_GL000254v2_alt    188768 163 +   4827813 ACACTCCTGCCTT--CCTCGCCAGCTACAGGTTTTCCT-CCAAATCTGAGTGCTGAGGCTCTGGAGCGGACAGAGAGGAAATGACGGCTGTGAACCA----CACGTCCGGCTCAGCCATTTTCTAGGCGGA--AA-AAAGGAAGCCCCTTTGG-----CTCT-CTCCTCCCTTTGTCCG
s panTro5.chr6              29176255 163 + 175400573 ACACTCCTGGCTT--CCTCGCCAGCTACAGGTTTTCCT-CCAAATCTGAGTGCTGAGGCTCTGGAGCGGACAGAGAGGAAATGACGGCTGTGAACCA----CACGTCCGGCTCAGCCATTTTCTAGGCGGA--AA-AAAGGAAGCCCCTTTGG-----CTCT-CTCCTCCCTTTGTCCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29410316 163 + 173848474 ACACTCCTGGCTT--CCTCGCCAGCTACAGGTTTTCCT-CCAAATCTGAGTGCTGAGGCTCTGGAGCGGACAGAGAGGAAATGACGGCTGTGAACCA----CACGTCCGGCTCAGCCATTTTCTAGGCGGA--AA-AAAGGAAGCCCCTTTGG-----CTCT-CTCCTCCCTTTGTCCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5210951 163 +   6154872 ACACTCCTGGCTT--CCTCGCCAGCTACAGGTTTTCCT-CCAAATCTGAGTGCTGAGGCTCTGGAGCGGACAGAGAGGAAATGACGGCTGTGAACCA----CACGTCCGGCTCAGCCATTTTCTAGGCGGA--AA-AAGGGAAGCCCCTTTGG-----CTCT-CTCCTCCCTTTGTCCG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74212480 163 + 122973662 ACACTCCTGGCTT--CCTCGCCAGCTACAGGTTTTCCT-CCAAATCTGAGTGCTGAGGCTCTGGAGCGGCCAGAGAGGAAATGACGGCTGTGAACCA----CACGTCCGGCTCAGCCATTTTCTAGGCGGA--AA-AAGGGAAGCCCCTTTGG-----CTCT-CTCCTCCCTTTGTCCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29390055 163 + 172585720 AGACTTCTGGCTC--CCTCGCCAGCTACAGGTTTTCCT-CCAAACCTGAGTGCTGAGGCTCTGGAGCGGACAGAGAGGAAATGACGGCTGTGAACCA----CACGTCCGGCTCAGCCATTTTCTAGGCGGA--AA-AAGGGAAGCCCCTTTGG-----CTCT-CTCCTCCCTTTGTCCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29050926 163 - 170955103 AGACTTCTGGCTC--CCTCGCCAGCTACAGGTTTTCCT-CCAAATCTGAGTGCTGAGGCTCTGGAGCGGACAGAGAGGAAATGACGGCTGTGAACCA----CACGTCCGGCTCAGCCATTTTCTAGGCGGA--AA-AAGGGAAGCCCCTTTGG-----CTCT-CTCCTCCCTTTGTCCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2041342 163 -   2996164 AGACTTCTGGCTC--CCTCGCCAGCTACAGGTTTTCCT-CCAAATCTGAGTGCTGAGGCTCTGGAGCGGACAGAGAGGAAATGACGGCTGTGAACCA----CACGTCCGGCTCAGCCATTTTCTAGGCGGA--AA-AAGGGAAGCCCCTTTGG-----CTCT-CTCCTCCCTTTGTCCG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1902926 163 -   2157725 AGACTTCTGGCTC--CCTCGCCAGCTACAGGTTTTCCT-CCAAATCTGAGTGCTGAGGCTCTGGAGCGGACAGAGAGGAAATGACGGCTGTGAACCA----CACGTCCGGCTCAGCCATTTTCTAGGCGGA--AA-AAGGGAAGCCCCTTTGG-----CTCT-CTCCTCCCTTTGTCCG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28347163 163 -  71996105 TGACTTCTAGCTC--CCTCGCCAGCTACAGGTTTTCCT-CCAAATCTGAGTGCTGAGGCTCTGGAGCGGACAGAGAGGAAATGACGGCTGTGAACCA----CACGTCCGGCTCAGCCATTTTCTAGGCGGA--AA-AAGGGAAGCCCCTTTGG-----CTCT-CTCCTCCCTTTGTCCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2033577 163 +   2316924 AGACTTCTGGCTC--CCTCGCCAGCTACAGGTTTTCCT-CCAAATCTGAGTGCTGAGGCTCTGGAGCGGACAGAGAGGAAATGACGGCTGTGAACCA----CACGTCCGGCTCAGCCATTTTCTAGGCGGA--AA-AAGGGAAGCCCCTTTGG-----CTCT-CTCCTCCCTTTGTCCG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1913197 163 -   3067355 AGACTTCTGGCTC--CCTCGCCAGCTACAGGTTTTCCT-CCAAATCTGAGTGCTGAGGCTCTGGAGCGGACAGAGAGGAAATGACGGCTGTGAACCA----CACGTCCGGCTCAGCCATTTTCTAGGCGGA--AA-AAGGGAAGCCCCTTTGG-----CTCT-CTCCTCCCTTTGTCCG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171436728 165 - 171630274 GGACTTGTGGCTT--CTTCGCCAGCCACAGGTTTTCCT-CCAGATCCGAGCGCGGAGGCTCCGGGGCGCACGGGGAGGAAATGACGGCTGCGAACCAGCCCCACGTCCGGCTCAGCCATTTTCTGGGCGGA--AA-AGGG---ACGCCCCGGG-----CTCTCCCCCTCCCTTTGTCCG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      260137 163 -    373274 GGACTTGCGGCTT--CTTCGCCAGCCACAGGTTTTCCT-CCCGATCCGAGCGTGGAGGCTGCGGGGCGCACGGGGAGGAAATGACGGCTGCGAACCAGCCCCACGTCCGGCTCAGCCATTTTCTGGGCGGA--AA-AAGG---ACGCCCTGGG-------CTCCCCCTCCCTTTGTCCG
i cebCap1.NW_016108108v1   C 0 I 16
s aotNan1.NW_018494050v1      191580 170 -    285216 GGACTTGTGGCTT--CTTCGCCAGCCACAGGTTCTCCT-CCAGATCCGAGCGCGGAGGCTCCGGGGCGCACGGGGAGGAAATGACGGCTGCGAACCAGCCCCACGTCCGGCTCAGCCATTTTCTGGGCGGA--AA-AGGG---ACGCCCCGGGCTGGGCTCTCCCCCTCCCTTTGTCCG
i aotNan1.NW_018494050v1   C 0 I 16
s proCoq1.NW_012147953v1      990642 165 -   3516910 AGACTTCTGGCTT--CCTCACCAGCTACAGGTTTTCCTCCCAAATCTGAATGCGGAGGCTCTGGAGAGGACAGAGAGGAAATGACGGCTGTGAACCA----CACGTCCGGCTCAGCCATTTTCTAGGCGGA--AAGAAGGGAAGCCCCTTTGG-----CTCT-CTCCTTCCTTTGTCCG
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1564422 165 -   2232465 AGACTTCTGATTT--CCTCACCAGCTACAGGTTTTCCTCCCAAATCTGAATGCGGAGGTTCTGGAGCGGGCAGAGAGGAAATGACGGTTGTGAATCA----CACGTCCGGCTCAGCCATTTTCTAGGCGGA--AAAAAGGGAGGCCCCTTCGG-----CTCT-CTCCTTCCTTTGTCCG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25921999 154 +  26524999 AGGCTCC-GGCTC--CCTCAGCAGCTACAGGTTCTC---GCAAACCCGCGCGCCGAGGCTCC---GCGTAGAGAAAGGAAATGACGGCTGCAAAGCA----CGCGTCCGGCTCAGCCATTTTCTAGGTGGA--GA-GGAGGCAGCCTCTCGGC-----CTCT----GCTCCTTTGTCCG
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             77219 126 -    302817 --GCGCCCGGCTTCCCCCCGCCAGCT-CAGGTCTCCCTCCCAAATGCGAGCGC----------------ACGGAGAGGAAATGACGGCGGGAGGCC-----CACGTCCGGCTCGGCCATTTTCTGGGCGGCGTGA-ACGGGAAGCCCCCGG----------------------------
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            262512 923 -    375362 M

a score=245318.000000
s hg38.chr6_GL000254v2_alt    188931 31 +   4827813 ACTCGCGCT---CCCGCCCTC-CCGGATCCGCGCC
s panTro5.chr6              29176418 31 + 175400573 ACTCGCGCT---CCCGCCCTC-CCGGATCCGCGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29410479 31 + 173848474 ACTCGCGCT---CCCGCCCTC-CCAGATCCGCGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5211114 31 +   6154872 ACTCGCGCT---CCCGCCCTC-CCGGATCCGCGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74212643 31 + 122973662 ACTCGCGCT---CCCGCCCTC-CCGGATCCGCACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29390218 31 + 172585720 ACTCGCGTT---CCCGCCCTC-CCGGATCCGCGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29051089 31 - 170955103 ACTCGCGCT---CCCGCCCTC-CCGGATCCGCGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2041505 31 -   2996164 ACTCGCGCT---CCCGCCCTC-CCGGATCCGCGCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1903089 31 -   2157725 ACTCGCGCT---CCCGCCCTC-CCGGATCCGCGCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28347326 31 -  71996105 ACTCGCGCT---CCCGCCCTC-CCGGATCCGCGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2033740 31 +   2316924 ACTCGCGCT---CCCGCCCTC-CCGGATGCGCGCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1913360 31 -   3067355 ACTCGCGCT---CCCGCCCTC-CCGGATCCGCGCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171436893 14 - 171630274 -------------CCGCCCGC-CC-------CGCC
i calJac3.chr4             C 0 I 2
s proCoq1.NW_012147953v1      990807 32 -   3516910 ACTCCCGCT---CCCACCCCTGTCCGCTCCGCGCC
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1564587 31 -   2232465 ACTCCCGCT---CCCGCCCCT-CCCGCTCCGCGCC
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25922153 32 +  26524999 -CTcgcgccccgcccgcccgc-ccgggcgcg-gcc
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             77345 24 -    302817 ----GCTCG---CGCGCCTTT-GCGCGCCCGC---
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            262512 923 -    375362 M
e aotNan1.NW_018494050v1      191750 16 -    285216 I
e cebCap1.NW_016108108v1      260300 16 -    373274 I

a score=5347059.000000
s hg38.chr6_GL000254v2_alt    188962 347 +   4827813 CTCACCTTGAAGCCCTCCACCGCCTCCTCGAGCGGCAGCACGCTGTGGCCGCGGTGCTCGCGGGAGCGGTCGCACACCACGCAGATGGGCATCTGGTCCTCCTCGCAGTACAGCTTCAGGGGCTCGCGGTGCTTCTCGCACACGCCCATCTCGCCGCCGGGCCCCGACGGCCGCTCGGTGCGCAGCTGCTTTACCAGTTGGGTCACGTTGGCC-AGGTGCCGGTTGGGCCGCATGTGCCTCTGCGGG-AAGGTCTCCCGGCACTGCGGGCACGACACGTTAGTCTCTGCCGTGCCCCAGCAGCGGGCGAGGCACGCGCAACAGATGTTATGGCCGCAGTCGAGCATCAT
s panTro5.chr6              29176449 347 + 175400573 CTCACCTTGAAGCCCTCCACCGCCTCCTCGAGCGGCAGCACGCTGTGGCCGCGGTGCTCGCGGGAGCGGTCGCACACCACGCAGATGGGCATCTGGTCCTCCTCGCAGTACAGCTTCAGGGGCTCGCGGTGCTTCTCGCACACGCCCATCTCGCCGCCGGGCCCCGACGGCCGCTCGGTGCGCAGCTGCTTTACCAGTTGGGTCACGTTGGCC-AGGTGCCGGTTGGGCCGCATGTGCCTCTGCGGG-AAGGTCTCCCGGCACTGCGGGCACGACACGTTAGTCTCTGCCGTGCCCCAGCAGCGAGCGAGGCACGCGCAACAGATGTTATGGCCGCAGTCGAGCATCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29410510 347 + 173848474 CTCACCTTGAAGCCCTCCACCGCCTCCTCGAGCGGCAGCACGCTGTGGCCGCGGTGCTCGCGGGAGCGGTCGCACACCACGCAGATGGGCATCTGGTCCTCCTCGCAGTACAGCTTCAGGGGCTCGCGGTGCTTCTCGCACACGCCCATCTCGCCGCCGGGCCCCGACGGCCGCTCGGTGCGCAGCTGCTTTACCAGTTGGGTCACGTTGGCC-AGGTGCCGGTTGGGCCGCATGTGCCTCTGCGGG-AAGGTCTCCCGGCACTGCGGGCACGACACGTTAGTCTCTGCCGTGCCCCAGCAGCGGGCGAGGCACGCGCAACAGATGTTATGGCCGCAGTCGAGCATCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5211145 347 +   6154872 CTCACCTTGAAGCCCTCCACCGCCTCCTCGAGCGGCAGCACGCTGTGGCCGCGGTGCTCGCGGGAGCGGTCGCACACCACGCAGATGGGCATCTGGTCCTCCTCGCAGTACAGCTTCAGGGGCTCGCGGTGCTTCTCGCACACGCCCATCTCGCCGCCGGGCCCCGACGGCCGCTCGGTGCGCAGCTGCTTTACCAGTTGGGTCACGTTGGCC-AGGTGCCGGTTGGGCCGCATGTGCCTCTGCGGG-AAGGTCTCCCGGCACTGCGGGCACGACACGTTAGTCTCTGCCGTGCCCCAGCAGCGGGCGAGGCACGCGCAACAGATGTTATGGCCGCAGTCGAGCATCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74212674 347 + 122973662 CTCACCTTGAAGCCCTCCACCGCCTCCTCGAGCGGCAGCACGCTGTGGCCGCGGTGCTCGCGGGAGCGGTCGCACACCACGCAGATAGGCATCTGGTCCTCCTCGCAGTACAGCTTCAGGGGCTCGCGGTGCTTCTCGCACACGCCCATCTCGCCGCCGGGCCCCGACGGCCGCTCGGTGCGCAGCTGCTTCACCAGTTGGGTCACGTTGGCC-AGGTGCCGGTTGGGCCGCATGTGCCTCTGCGGG-AAGGTCTCCCGGCACTGCGGGCACGACACGTTAGTCTCTGCCGTGCCCCAGCAGCGGGCGAGGCACGCGCAACAGATGTTATGGCCGCAGTCGAGCATCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29390249 347 + 172585720 CTCACCTTGAAGCCCTCCACTGCCTCCTCGAGCGGCAGCACGCTGTGGCCGCGGTGCTCGCGGGAGCGGTCGCACACCACGCAGATGGGCATCTGGTCCTCCTCGCAGTAGAGCTTCAGGGGCTCGCGGTGTTTCTCGCACACGCCCATCTCGCCGCCGGGCCCCGACGGCCGCTCGGTGCGCAGCTGCTTCACCAGCTGGGTCACGTTGGCC-AGGTGCCGGTTGGGCCGCATGTGCCTCTGCGGG-AAGGTCTCCCGGCACTGCGGGCACGACACGTTAGTCTCTGCCGTGCCCCAGCAGCGGGCGAGGCACGCGCAACAGATGTTATGGCCGCAGTCGAGCATCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29051120 347 - 170955103 CTCACCTTGAAGCCCTCCACTGCCTCCTCGAGCGGCAGCACGCTGTGGCCGCGGTGCTCGCGGGAGCGGTCGCACACCACGCAGATGGGCATCTGGTCCTCCTCGCAGTAGAGCTTCAGGGGCTCGCGGTGCTTCTCGCACACGCCCATCTCGCCGCCGGGCCCCGACGGCCGCTCGGTGCGCAGCTGCTTCACCAGCTGGGTCACGTTGGCC-AGGTGCCGGTTGGGCCGCATGTGCCTCTGCGGG-AAGGTCTCTCGGCACTGCGGGCACGACACGTTAGTCTCTGCCGTGCCCCAGCAGCGGGCGAGGCACGCGCAACAGATGTTATGGCCGCAGTCGAGCATCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2041536 347 -   2996164 CTCACCTTGAAGCCCTCCACTGCCTCCTCGAGCGGCAGCACGCTGTGGCCGCGGTGCTCGCGGGAGCGGTCGCACACCACGCAGATGGGCATCTGGTCCTCCTCGCAGTAGAGCTTCAGGGGCTCGCGGTGTTTCTCGCACACGCCCATCTCGCCGCCGGGCCCCGACGGCCGCTCGGTGCGCAGCTGCTTCACCAGCTGGGTCACGTTGGCC-AGGTGCCGGTTGGGCCGCATGTGCCTCTGCGGG-AAGGTCTCCCGGCACTGCGGGCACGACACGTTAGTCTCTGCCGTGCCCCAGCAGCGGGCGAGGCACGCGCAACAGATGTTATGGCCGCAGTCGAGCATCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1903120 347 -   2157725 CTCACCTTGAAGCCCTCCACTGCCTCCTCGAGCGGCAGCACGCTGTGGCCGCGGTGCTCGCGGGAGCGGTCACACACCACGCAGATGGGCATCTGGTCCTCCTCGCAGTAAAGCTTCAGGGGCTCGCGGTGCTTCTCGCACACGCCCATCTCGCCGCCGGGCCCCGACGGCCGCTCGGTGCGCAGCTGCTTCACCAGCTGGGTCACGTTGGCC-AGGTGCCGGTTGGGCCGCATGTGCCTCTGCGGG-AAGGTCTCCCGGCACTGCGGGCACGACACGTTAGTCTCTGCCGTGCCCCAGCAGCGGGCGAGGCACGCGCAACAGATGTTATGGCCGCAGTCGAGCATCAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28347357 347 -  71996105 CTCACCTTGAAGCCCTCTACTGCCTCCTCGAGCGGCAGCACGCTGTGGCCGCGGTGCTCGCGGGAGCGGTCGCACACCACGCAGATGGGCATCTGGTCCTCCTCGCAGTAGAGCTTCAGGGGCTCGCGGTGCTTCTCGCACACGCCCATCTCGCCGCCGGGCCCCGACGGCCGCTCGGTGCGCAGCTGCTTCACCAGCTGGGTCACGTTGGCC-AGGTGCCGGTTGGGCCGCATGTGCCTCTGCGGG-AAGGTCTCCCGGCACTGCGGGCACGACACGTTAGTCTCTGCCGTGCCCCAGCAGCGGGCGAGGCACGCGCAACAGATGTTATGGCCGCAGTCGAGCATCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2033771 347 +   2316924 CTCACCTTGAAGCCCTCCACTGCCTCCTCGAGCGGCAGCACGCTGTGGCCGCGGTGCTCGCGGGAGCGGTCACACACCACGCAGATGGGCATCTGGTCCTCCTCGCAGTAAAGCTTCAGGGGCTCGCGGTGCTTCTCGCACACGCCCATCTCGCCGCCGGGCCCCGACGGCCGCTCGGTGCGCAGCTGCTTCACCAGCTGGGTCACGTTGGCC-AGGTGCCGGTTGGGCCGCATGTGCCTCTGCGGG-AAGGTCTCCCGGCACTGCGGGCACGACACGTTAGTCTCTGCCGTGCCCCAGCAGCGGGCGAGGCACGCGCAACAGATGTTATGGCCGCAGTCGAGCATCAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1913391 347 -   3067355 CTCACCTTGAAGCCCTCCACTGCCTCCTCGAGCGGCAGCACGCTGTGGCCGCGGTGCTCGCGGGAGCGGTCGCACACCACGCAGATGGGCATCTGGTCCTCCTCGCAGTAGAGCTTCAGGGGCTCACGGTGCTTCTCGCACACGCCCATCTCGCCGCCGGGCCCCGACGGCCGCTCGGTGCGCAGCTGCTTCACCAGCTGGGTCACGTTGGCC-AGGTGTCGGTTGGGCCGCATGTGCCTCTGCGGG-AAGGTCTCCCGGCACTGCGGGCACGACACGTTAGTCTCTGCCGTGCCCCAGCAGCGGGCGAGGCACGCGCAACAGATGTTATGGCCGCAGTCGAGCATCAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171436909 347 - 171630274 CTCACCTTGAAGCCCTCCACGGCCTCCTCGAGCGGCAGCACGCTGTGTCCGCGGTGCTCGCGGGAGCGGTCGCACACCACGCAGATGGGCGTCTGGTCCTGCTCGCAGTACAGCTTCAGCGGCTCGCGGTGCTTCTCGCACGCGCCCATCTCCCCGCCCGGGCCCACCGGCCGCTCGGAGCGCAGCTGCTTCACCAGCTGGGTGACGTTGGCC-AGGTGGCGGTTGGGCCGCAGGTGCCGCTGCGGG-AAGGTCTCCCGGCACTGCGGGCACGACACGTTGGTCTCCGCCGCGCCCCAGCAGCGCGCCAGGCACGCGCCGCAGATGTTGTGTCCGCAGTCGAGCATCAT
i calJac3.chr4             I 2 C 0
s cebCap1.NW_016108108v1      260316 347 -    373274 CTCACCTTGAAGCCCTCCACGGCCTCCTCGAGCGGCAGCACGCTGTGTCCGCGGTGCTCGCGGGAGCGGTCGCACACCACGCAGATGGGCGTCTGGTCCTGCTCGCAGTACAGCTTCAGCGGCTCGCGGTGCTTCTCGCACGCGCCCATCTCCCCGCCCGGGCCCGCCGGCCGCTCGGAGCGCAGCTGCTTCACCAGCTGGGTGACGTTGGCC-AGGTGGCGGTTGGGCCGCAGGTGCCGCTGCGGG-AAGGTCTCCCGGCACTGCGGGCACGACACGTTGGTCTCCGCCGCGCCCCAGCAGCGCGCCAGGCACGCGCCGCAGATGTTGTGTCCGCAGTCAAGCATCAT
i cebCap1.NW_016108108v1   I 16 C 0
s aotNan1.NW_018494050v1      191766 347 -    285216 CTCACCTTGAAGCCCTCCACGGCCTCCTCGAGCGGCAGCACGCTGTGTCCGCGGTGCTCGCGGGAGCGGTCGCACACCACGCAGATGGGCGTCTGGTCCTGCTCGCAGTACAGCTTCAGCGGCTCGCGGTGCTTCTCGCACGCGCCCATCTCCCCGCCCGGGCCCGCTGGCCGCTCGGAGCGCAGCTGCTTCACCAGCTGGGTGACGTTGGCC-AGGTGGCGGTTGGGCCGCAGGTGCCGCTGCGGG-AAGGTCTCCCGGCACTGCGGGCACGACACGTTGGTCTCCGCCGCGCCCCAGCAGCGCGCCAGGCACGCGCCGCAGATGTTGTGTCCGCAGTCGAGCATCAT
i aotNan1.NW_018494050v1   I 16 C 0
s proCoq1.NW_012147953v1      990839 347 -   3516910 CTCACCTTGAAGCCCTCCACCGCCTCCTCGAGCGGCAGCACGCTGTGGCCGCGGTGCTCGCGGGAGCGGTCGCACACCACGCAGATGGGCATCTGGTCCTCCTCGCAGTACAGCTTCAGTGGCTCGCGGTGCTTCTCGCACACGCCCATCTCGCCGCCGGGCCCCGACGGCCGCTCGGTGCGCAGCTGCTTCACCAGCTGGGTCACGTTGGCC-AGATGCCGGTTGGGCCGCATGTGCCGCTGCGGG-AAGGTCTCCCGGCACTGCGGGCACGACACGTTAGTCTCTGCTGCGCCCCAGCAGCGGGCGAGGCACGCGCAACAGATGTTGTGGCCGCAGTCGAGCATCAT
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1564618 347 -   2232465 CTCACCTTGAAGCCCTCCACCGCCTCCTCGAGCGGCAGCACGCTGTGGCCGCGGTGCTCGCGGGAGCGGTCGCACACCACGCAGATGGGCATCTGGTCCTCCTCGCAGTACAGCTTCAGGGGCTCGCGGTGCTTCTCGCACACGCCCATCTCGCCCCCGGGCCCCGACGGCCGCTCGGTGCGCAGCTGCTTCACCAGCTGGGTCACGTTGGCC-AGATGCCGGTTGGGCCGCATGTGTCGCTGTGGG-AAGGTCTCCCGGCACTGCGGACAGGACACGTTAGTCTCTGCCGCACCCCAACAACGGGCGAGGCACGCGCAACAGATGTTGTGGCCGCAGTCGAGCATCAT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25922185 346 +  26524999 cTTACCTTGAAGCCCTCCACCGCCTCCTCGAGCGGCAGCACGCTGTGGCCGCGGTGCTCCCGGGAGCGGTCGCACACCACGCAGATGGGCATCTGGTCCTCCTCGCAGTACAGCTTCAGCGGCTCGCGGTGCTTCTCGCACACGCCCATCTCGCCCCCGGGCCCCGACGGCCGCTCGGTGCGCAGCTGCTTCACCAGCTGGGTCACGTTGGCC-AGGTGCCGGTTGGGCCGCATGTGGCGCTGCGGG-AAGGTCTCCCGGCACTGCGGGCACGACACGTTGGTCTCCGCCGCGCCCCAGCAGCGGGCCAGAAACGCGCAACAGATG-TGTGGCCGCAGTCGAGCATCAT
i canFam3.chr35            C 0 M 130
s dasNov3.JH561790             77369 349 -    302817 CTCACCTTGAAGCCCTCCACCGCCTCCTCGAGCGGCAGCACGCTGTGGCCGCGGTGCTCGCGCGAGCGGTCGCACACCACGCAGATGGGCATCTGGTCCTCCTCGCAGTATAGCTTCAGCGGCTCGCGGTGCTTCTCGCACACGCCCATCTCGCCGCCGGGCCCCGACGGCCGCTCGGTGCGCAGCTGCTTCACCAGCTGGGTCACGTTGGCCAAGGTGCCGGATGGGCCGCATGTGGCGCTGCGGGAAAGGTCTCCCGGCACTGCGGGCACGACACGTTGGTCTCGGCCGCGCCTCATCAGCGCGCGAGGCACGCGCAACAGATGTTGTGGCCGCAGTCGAGCATCAT
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            262512 923 -    375362 M

a score=483259.000000
s hg38.chr6_GL000254v2_alt    189309 35 +   4827813 GGGCTCTGCGAAGTACTGCAGGCACACGGGGCAGG
s panTro5.chr6              29176796 35 + 175400573 GGGCTCTGCGAAGTACTGCAGGCACACGGGGCAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29410857 35 + 173848474 GGGCTCTGCGAAGTACTGCAGGCACACGGGGCAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5211492 35 +   6154872 GGGCTCTGCGAAGTACTGCAGGCACACGGGGCAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74213021 35 + 122973662 GGGCTCTGCAAAGTACTGCAGGCACACGGGGCAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29390596 35 + 172585720 GGGCTCTGCGAAGTACTGCAGGCACACGGGGCAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29051467 35 - 170955103 GGGCTCTGCGAAGTACTGCAGGCACACGGGGCAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2041883 35 -   2996164 GGGCTCTGCGAAGTACTGCAGGCACACGGGGCAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1903467 35 -   2157725 GGGCTCTGCGAAGTACTGCAGGCACACGGGGCAGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28347704 35 -  71996105 GGGCTCTGCGAAGTACTGCAGGCACACGGGGCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2034118 35 +   2316924 GGGCTCTGCGAAGTACTGCAGGCACACGGGGCAGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1913738 35 -   3067355 GGGCTCTGCGAAGTACTGCAGGCACACTGGGCAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171437256 35 - 171630274 GGGCTCGGAGAAGTACTGCAGGCACACGGGGCAGG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      260663 35 -    373274 GGGCTCGGAGAAGTACTGCAGGCACACGGGGCAGG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      192113 35 -    285216 GGGCTCGGAGAAGTACTGCAGGCACACGGGGCAGG
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      991186 35 -   3516910 GGGCTCAGCGAAGTACTGCAGGCACACAGGGCAGG
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1564965 35 -   2232465 GGGCTCGGCGAAGTACTGCAGGCACACAGGGCAGG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             77718 35 -    302817 GGGCTCGGCGAAATACTGCAGGCACACGGGGCAGG
i dasNov3.JH561790         C 0 M 1001
e canFam3.chr35             25922531 130 +  26524999 M
e saiBol1.JH378348            262512 923 -    375362 M

a score=610956.000000
s hg38.chr6_GL000254v2_alt    189344 51 +   4827813 TGGTCTCCTGCTGCAGGCACTCGGCCACACTCCCGGAGGCCATGGCGCCGG
s panTro5.chr6              29176831 51 + 175400573 TGGTCTCCTGCTGCAGGCACTCCGCCACGCTCCCGGAGGCCATGGCGCCGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29410892 51 + 173848474 TGGTCTCCTGCTGCAGGCACTCGGCCACGCTCCCGGAGGCCATGGCGCCGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5211527 51 +   6154872 TGGTCTCCTGCTGCAGGCACTCGGCCACGCTCCCGGAGGCCATGGCGCCGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74213056 51 + 122973662 TGGTCTCCTGCTGCAGGCACTCGGCCACGCTCCCGGAGGCCATGGCGCCGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29390631 51 + 172585720 TGGTCTCCTGCTGCAGGCACTCGGCCACGCTCCCGGAGGCCATGGCGCGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29051502 51 - 170955103 TGGTCTCCTGCTGCAGGCACTCGGCCACGCTCCCGGAGGCCATGGCGCGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2041918 51 -   2996164 TGGTCTCCTGCTGCAGGCACTCGGCCACGCTCCCGGAGGCCATGGCGCGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1903502 51 -   2157725 TGGTCTCCTGCTGCAGGCACTCGGCCACGCTCCCGGAGGCCATGGCGCGGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28347739 51 -  71996105 TGGTCTCCTGCTGCAGGCACTCGGCCACGCTCCCGGAGGCCATGGCGCGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2034153 51 +   2316924 TGGTCTCCTGCTGCAGGCACTCGGCCACGCTCCCGGAGGCCATGGCGCGGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1913773 51 -   3067355 TGGTCTCCTGCTGCAGGCACTCGGCCACGCTCCCGGAGGCCATGGCGCGGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171437291 50 - 171630274 TGGTCTCCTGCTGCAGGCACTCGGCCACGCTCGCGGACGCCATGGCG-GGG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      260698 50 -    373274 TGGTCTCCTGCTGCAGGCACTCGGCCACGCTCGCGGACGCCATGGCG-GGG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      192148 50 -    285216 TGGTCTCCTGCTGCAGGCACTCGGCCACGCTCGCGGACGCCATGGCG-GGG
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      991221 51 -   3516910 TGGTCTCCTGCTGCAGGCACTCGGCCACGCTTCCGGAGGCCATGGCGCGGG
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1565000 51 -   2232465 TGGTCTCCTGCTGCAGGCACTCGGCCACGCTCCCGGAGGCCATAGCGCTGG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             77753 1001 -    302817 M
e canFam3.chr35             25922531 130 +  26524999 M
e saiBol1.JH378348            262512 923 -    375362 M

a score=1987487.000000
s hg38.chr6_GL000254v2_alt    189395 185 +   4827813 CCTGCGGGGGCGCACGGGCATGGGCCC---------CGGCGCCGAGCTCCGCACTGAGCCCAACTCTCCGGCGCTCTCTCCGGTTCGCTGTTCCTGAGAGGCACC---------------GGGCGGACGGAGGGCGGCGCCTCCCGGGCCCGTATCCCAGACGCGCCCGCGCACCGAAGGCTTGGAGTGG--------CCGGGCCGATGCCTGCGCC
s panTro5.chr6              29176882 185 + 175400573 CCTGCGGGGGCGCACGGGCATGGGCCC---------CGGCGCCGAGCTCTGCACGGAGCCCAACTCTCCGGCGCTCTCTCCGGTTCGCTGTTCCTGAGAGGCACC---------------GGGCGGACGGAGGGCGGCGCCTCCCGGGCCCGTATCCCAGACGCGCCCGCGCACCGAAGGCTTGGAGTGG--------CCGGGCCGCTCCCTGCGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29410943 185 + 173848474 CCTGCGGGGGCGCACGGGCATGGGCCC---------CGGCGCCGAGCTCTGCACGGAGCCCAACTCTCCGGCGCTCTCTCCGGTTCGCTGTTCCTGAGAGGCACC---------------GGGCGGACGGAGGGCGGCGCCTCCCGGGCCCGTATCCCAGACGCGCCCGCGCACCGAAGGCTTGGAGTGG--------CCGGGCCGCTCCCTGCGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5211578 185 +   6154872 CCTGCGGGGGCGCACGGGCATGGGCCC---------CGGCGCCGAGCTCTGCACGGAGCCCAACTCTCCGGCGCTCTCTCCGGTTCGCTGTTCCTGAGAGGCACC---------------GGGCGGACGGAGGGCGGCGCCTCCCGGGCCCGTATCCCAGACGCGCCCGCGCACCGAAGGCTTGGAGTGG--------CCGGGCCGCTCTCTGCGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74213107 184 + 122973662 CCTGCGGGGGCGCACGGGCATGGGCCC---------CGGCGCCGAGCTCTGCACGGAGCCCAACTCTCCGGCGCTCTCTCCGGTTCGCTGTTCCTAAGAGGCACC---------------GAGCGGACGGAGGGCGGCGCCTCTCGGGCCCGTATCCCAG-CGCGCCCGCGCACCGAAGGCTCAGAGTGG--------CCCGGCCGCTCCCTGCGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29390682 185 + 172585720 CCTGCGGGGGCTCACGGGCATGGGCCC---------CGGCGCCGAGCTCTGCACGGAGCCCAACTCTCCGGCGCTCTCTCCCGTTCGCTGTTCCTGGGAGGCACC---------------GGGCGGACGGAGGGCGGTGCCTCCCGGGCCCGTATCCCAGACGCGCCCGCGCACCGAAGGCTCAGAGTGG--------CCGGGCCGATCCCTGCGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29051553 185 - 170955103 CCTGCGGGGGCTCACGGGCATGGGCCC---------CGGCGCCGAGCTCTGCACGGAGCCCAACTCTCCGGCGCTCTCTCCCGTTCGCTGTTCCTGGGAGGCACC---------------GGGCGGACGGAGGGCGGTGCCTCCCGGGCCCGTATCCCAGACGCGCCCGCGCACCGAAGGCTCAGAGTGG--------CCGGGCCGATCCCTGCGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2041969 185 -   2996164 CCTGCGGGGGCTCACGGGCATGGGCCC---------CGGCGCCGAGCTCTGCACGGAGCCCAACTCTCCGGCGCTCTCTCCCGTTCGCTGTTCCTGGGAGGCACC---------------GGGCGGACGGAGGGCGGTGCCTCCCGGGCCCGTATCCCAGACGCGCCCGCGCACCGAAGGCTCAGAGTGG--------CCGGGCCGATCCCTGCGCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1903553 185 -   2157725 CCTGCGGGGGCTCACGGGCATGGGCCC---------CGGCGCCGAGCTCTGCACGGAGCCCAACTCTCCGGCGCTCTCTCCCGTTCGCTGTTCCTGGGAGGCACG---------------GGGCGGACGGAGGGCGGTGCCTCCCGGGCCTGTATCCCAGACGCGCCCGCGCACCGAAGGCTCAGAGTGG--------CCGGGCCGCTCCCTGCGCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28347790 185 -  71996105 CCTGCGGGGGCTCACGGGCATGGGCCC---------CGGCGCCGAGCTCTGCACGGAGCCCAACTCTCCGGCGCTCTCTCGCGTTCGCTGTTCCTGGGAGGCAAG---------------GGGCGGACGGAGGGCGGTGCCTCCCGGGCCCGTATCCCAGACGCGCCCGCGCACCGAAGGCTCAGAGTGG--------CCGGGCCGCTCCCTGCGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2034204 185 +   2316924 CCTGCGGGGGCTCACGGGCATGGGCCC---------CGGCGCCGAGCTCTGCACGGAGCCCAACTCTCCGGCGCTCTCTCCCGTTCGCTGTTCCTGGGAGGCACG---------------GGGCGGACGGAGGGCGGTGCCTCCCGGGCCTGTATCCCAGACGCGCCCGCGCACCGAAGGCTCAGAGTGG--------CCGGGCCGCTCCCTGCGCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1913824 185 -   3067355 CCTGCGGGAGCTCACGGGCATGGGCCC---------CGGCGCCGAGCTCTGCACGGAGCCCAACTCTCCGGCGCTCTCTCCGGTTCGCTGTTCCTGGGAGGCACG---------------GGGCGGACGGAGGGCGGTGCCTCCCGGGCCCGTATCCCAGACGCGCCCGCGCACCGAAGGCTCAGAGTGG--------CCGGGCCGCTCCCTGCGCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171437341 178 - 171630274 CCTGCGGG-GCGCACGGGCATGGGCCC---------CG--ACCGAGCTCCGCGCCGCGCCCAACTCTCCCGCGCTCTC---CGGTCGCCGTTCCCGGGAggcgcg---------------gggcgggcggagggcggcgcctcccgggcccggAT-CCAGACGCGCCCGCGCCGCGAAGACTCGAGGTgg--------ccgcgccgctccccgcgcc
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      260748 178 -    373274 CCTGCGGA-GCGCACGGGCATGGGCCC---------CA--GCCGAGCTCCGCGCCGCGCCCAACTCTCCCGCGCTCTC---CGGTCGCGGTTCCCCGGAGGCGCG---------------GGGCGGGCGGAGGGCGGCGCCTCCCGGGCCCGGAT-CCAGACGTGCCCGCGCCGCGAAGACTCGAGGTGG--------CCGCGCTGCTTCCCGCGCC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      192198 187 -    285216 CCTGCGGG-GCGCACGGGCATGGGCCCCGGCCCCCTCG--GCCGAGCTCCGCGCCGCGCCCAACTCTCCCGCGCTCTC---CGGTCGCCGCTCCCGGGAGGCGCG---------------GGGCGGGCGGAGGGCGGCACCTCCCGGGCCCGGAT-CCAGACGCGCCCGCGCCGCGAACGCTCGAGGTGG--------CCGCGCCGCTCCCTGCGCC
i aotNan1.NW_018494050v1   C 0 I 41
s proCoq1.NW_012147953v1      991272 199 -   3516910 CCTGCGGGGGCGCA-GAGCATGGGCCC---------CGGAGCAGAGCTCTACGTGGAGCCCAACTCTCCTGCGCTCTTTCCCGTTCGCTGCTCCTGGGCGGCACGGGGAGGAGGCAAGCGGGGCGCACGGAGGGCGGCGCCTCTCAGGCCCAGATCCCAGACGCGACCGCGCGCGGAAGCCTCAGAGGGG--------CCAGGCCGCTCCCTGCGCC
i proCoq1.NW_012147953v1   C 0 I 2
s otoGar3.GL873742           1565051 195 -   2232465 CCCGCGGGGGCGCA-GGGCATGGGCCC---------CAGCGCCGAGCTCTACGCGGAGCCCAACTCTCCCGTGCTCTTTCCCGTTCGCTGCTCCTGGGCGGCGCGG---GGAGACAAGC-GGGCACACGGAGGGCGGCGCCTCTCAGGCCCGGATCCCAGACGCGCCCGCGGGCGGGAGCCTCGGACTGG--------CCGGGCCGCTCCCTGCGCC
i otoGar3.GL873742         C 0 I 2
s canFam3.chr35             25922662 170 +  26524999 NCCGCGGGGGCGCAAGGGCAT-GGCCC---------AGGCGCCG-GCTCTCC--GGGATCCAGCTCACCGG-GCGCCCTCCCGCTCGCGGCTTCAgggcggcgcg-----------------------ggcaggcggcccctccc-gcccggggtccccaacgcgcacg---------gcccccgcgcggcccTCCCTCCCAGTCCCTCCGTGCGTC
i canFam3.chr35            M 130 C 0
e dasNov3.JH561790             77753 1001 -    302817 M
e saiBol1.JH378348            262512 923 -    375362 M

a score=79553.000000
s hg38.chr6_GL000254v2_alt    189580 11 +   4827813 TGTGCCCCCTA--
s panTro5.chr6              29177067 11 + 175400573 TGTGCCCCCTA--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411128 11 + 173848474 TGTGCCCCCTA--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5211763 11 +   6154872 TGTGCCCCCTA--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74213291 11 + 122973662 TGTGCCCGCTA--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29390867 11 + 172585720 TGTGCCCCCTG--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29051738 11 - 170955103 TGTGCCCCCTG--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2042154 11 -   2996164 TGTGCCCCCTG--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1903738 11 -   2157725 TGTGCCCCCTG--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28347975 11 -  71996105 TGTGCCCCCTG--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2034389 11 +   2316924 TGTGCCCCCTG--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914009 11 -   3067355 TGTGCCCCCTG--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171437519 11 - 171630274 ggggcccccgA--
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      260926 11 -    373274 CGGGCCCCCGA--
i cebCap1.NW_016108108v1   C 0 I 20
s proCoq1.NW_012147953v1      991473 11 -   3516910 TGTACCCCGCG--
i proCoq1.NW_012147953v1   I 2 I 1
s otoGar3.GL873742           1565248 11 -   2232465 TGTACTCCGTT--
i otoGar3.GL873742         I 2 I 1
s canFam3.chr35             25922832 12 +  26524999 -GCGGCCCCGCCC
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             77753 1001 -    302817 M
e saiBol1.JH378348            262512 923 -    375362 M
e aotNan1.NW_018494050v1      192385 41 -    285216 I

a score=290201.000000
s hg38.chr6_GL000254v2_alt    189591 50 +   4827813 AGCGAGAGCGGGAATACGGCCGGCTCACCGAGGCTCGCGGCCACGCTAGT
s panTro5.chr6              29177078 50 + 175400573 AGCGAGAGCGGGAATACGGCCGGCTCACCGAGGCTCGCGGCCACGCTAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411139 50 + 173848474 AGCGAGAGCGGGAATACGGCCGGCTCACCGAGGCTCGCGGCCACGCTAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5211774 50 +   6154872 AGCGAGAGCGGGAATACGGCCGGCTCACCGAGGCTCGCGGCCACGCTAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74213302 50 + 122973662 AACGAGCGCGGGAATACGGCCGGCGCACAGAGGCTCGCGGCCACGCTAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29390878 50 + 172585720 AGCGAGTGCGGGAATACAGCCGGCTCACAGAGACTCGCGGCCACGCTACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29051749 50 - 170955103 AGCGAGTGCGGGAATACAGCCGGCTCACAGAGACTCGCGGCCACGCTACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2042165 50 -   2996164 AGCGAGTGCGGGAATACAGCCGGCTCACAGAGACTCGCGGCCACGCTACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1903749 49 -   2157725 AGCGAGTGCGGGAATAC-GCCGGCTCACAGAGGCTCCCGGCCACGCTACT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28347986 50 -  71996105 AGCGAGTGCGGGAATACAGCCGGCTCACAGAGGCTCGCGGCCACGCTACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2034400 49 +   2316924 AGCGAGTGCGGGAATAC-GCCGGCTCACAGAGGCTCCCGGCCACGCTACT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914020 34 -   3067355 AGTGAGTGCGGGAATACAGCCGGCT----------------CACGCTACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171437530 20 - 171630274 --TGAAGGCGCGAA---------------------------CACGCTCC-
i calJac3.chr4             C 0 C 0
s proCoq1.NW_012147953v1      991485 50 -   3516910 AGTGAGCGCGGGAATACTGCCGCCTCACCAAGCCTCGCGACTACGCCAAG
i proCoq1.NW_012147953v1   I 1 C 0
s otoGar3.GL873742           1565260 50 -   2232465 AGGGAGCGCGTGAATACTGCTGCCTCACCCGGCCTCACGGCTGTGTCGGG
i otoGar3.GL873742         I 1 C 0
s canFam3.chr35             25922844 48 +  26524999 AGCG-GCCCTGGGGTCCTGCGGCCCCGCGGAGCCCCG-GGATGCGCGACT
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             77753 1001 -    302817 M
e saiBol1.JH378348            262512 923 -    375362 M
e aotNan1.NW_018494050v1      192385 41 -    285216 I
e cebCap1.NW_016108108v1      260937 20 -    373274 I

a score=77320.000000
s hg38.chr6_GL000254v2_alt    189641 11 +   4827813 GGGGCAGGAAA
s panTro5.chr6              29177128 11 + 175400573 GGGGCAGCAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411189 11 + 173848474 GGGGCAGCAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5211824 11 +   6154872 GGGGCAGGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74213352 11 + 122973662 GGGGCAGGAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29390928 11 + 172585720 GGGGCAGGAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29051799 11 - 170955103 GGGGCAGGAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2042215 11 -   2996164 GGGGCAGGAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1903798 11 -   2157725 CAGGCAGGAAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348036 11 -  71996105 GGGGCAGGAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2034449 11 +   2316924 CAGGCAGGAAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914054 11 -   3067355 GGGGCAGGAAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171437550 11 - 171630274 GGGGCAGGGCC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      260957 11 -    373274 GGGGCAGGGCC
i cebCap1.NW_016108108v1   I 20 C 0
s proCoq1.NW_012147953v1      991535 11 -   3516910 GGGCCGGGAGC
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1565310 11 -   2232465 GGAGCGGGAAC
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25922892  5 +  26524999 -gggcc-----
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             77753 1001 -    302817 M
e saiBol1.JH378348            262512 923 -    375362 M
e aotNan1.NW_018494050v1      192385 41 -    285216 I

a score=1022141.000000
s hg38.chr6_GL000254v2_alt    189652 95 +   4827813 GGGTAGCCGAGGGTCAGAGTCCCAGGGCCAGGCGGGCAAAGCGCGCAAGACAACGTGGCCGCGTCCG-AGCGGATGCCGGCGGCAGCGTAAACCCC
s panTro5.chr6              29177139 95 + 175400573 GGGTAGCCGAGGGTCAGAGTCCCAGGGCCAGGCGGGCAAACCGCGCAAGACAACGTGGCCGCGTCCT-AGCGGATCCCGGCGGCCGCGTAAACCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411200 95 + 173848474 GGGTAGCCGAGGGTCAGAGTCCCAGGGCCAGGCGGGCAAACCGCGCAAGACAACGTGGCCGCGTCCG-AGCGGATCCCGGCGGCCGCGTAAACCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5211835 95 +   6154872 GGGTAGCCGAGGGTCAGAGTCCCAGGGCCAGGCGGGCAAAGCGCGCAAGACAACGTGGCCGCGTCCG-AGCGGATCCCGGCGGCCGCGTAAACCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74213363 95 + 122973662 GGGTAGCCGAGGGTCAGGGTCTCAGGGCCAGGCGGGCAAAGCGCGCAAGACAACGTGGCCGCGTCCG-AGCGGATCCCGGCGGCCGCGTAAACCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29390939 95 + 172585720 GGGTAGCCAAGGGTCAGGATCCCAGGGCCAGGCGCGCAAAGCGCGCAAGACAACGTGGCCGCGTCCG-AGCGGATCCCGGCGGCCGCGTAGACCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29051810 95 - 170955103 GGGTAGCCAAGGGTCAGGATCCCAGGGCCAGGCGCGCAAAGCGCGCAAGACAACGTGGCCGCGTCCG-AGCGGATCCCGGCGGCCGCGTAGACCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2042226 95 -   2996164 GGGTAGCCAAGGGTCAGGATCCCAGGGCCAGGCGCGCAAAGCGCGCAAGACAACGTGGCCGCGTCCG-AGCGGATCCCGGCGGCCGCGTAGACCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1903809 95 -   2157725 AGGTAGCCAAGGGTCAGGATCCTAGGGCCAGGCGCGCAAAGCGCGCAAGACAACGTGGCCGCGTCGG-AGCGGATCCCGGCGGCCGCGTAGACCCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348047 95 -  71996105 GGGTAGCCAAGGGTCAGGATCCCAGGGCCAGGCGCGCAAAGCGCGCAAGACAACGTGGCCGCGTCCG-AGCGGATCCCGGCGGCCGCGTAGACCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2034460 95 +   2316924 AGGTATCCAAGGGTCAGGATCCTAGGGCCAGGCGCGCAAAGCGCGCAAGACAACGTGGCCGCGTCGG-AGCGGATCCCGGCGGCCGCGTAGACCCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914065 95 -   3067355 GGGTAGCCAAGGGTCAGGATCCCACGGCCAGGCGCGCAAAGCGCGCAGGACAACGTGGCCGCGTCGG-AGCGGATCCCGGCGGCCGCGTAGACCCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171437561 87 - 171630274 GGGTCGCCGAGGGGCAGAAGCCCAGG---------GGCAGGCGCGCAAGACAACGTGGCCGCGTCCGAAGCGGGTCCCGGCGGCCGCGCAGACCCC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      260968 95 -    373274 GGGTCGCCAAGGGGCAGAAGCCCAGGGCCAGGCGCGGCAAGCGCGCAACACAACGTGGCCGCGTCCG-AGCGGGTCCCGGCGGCCGCGCAGACCCC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      192426 95 -    285216 GGGTCGCCGAGGGGCAGAAGCCCAGGGCCAGGCGCGGCAAGCGCGCAAGACAACGTGGCCGCGTCCG-AGCGGGTCCCGGCGGCCGCGCAGACCCC
i aotNan1.NW_018494050v1   I 41 C 0
s proCoq1.NW_012147953v1      991546 94 -   3516910 AGGGCGCCGCGG-TCAGGCTCACAGGGTCAGGCGCAACAAGCGCGCTAGACAACGTGGCCGCCTCCG-AGCGGATCCCGGCGGCCGCGTAGACCCC
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1565321 95 -   2232465 AAGGCGCCGCGGACCAGGTTTACAAGACCAAGCGCAACAAGCGCGAAAGACAACGTGGCCGCGTCCG-AGCGGATCCCGGCTGCCGCGTAGACCCC
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25922897 58 +  26524999 -----gccgagggccg----ccgccggccggacg-------cgcgcAGGACAACGTGGCGGCGTCCG-AGCGGAT---------------------
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             77753 1001 -    302817 M
e saiBol1.JH378348            262512 923 -    375362 M

a score=789623.000000
s hg38.chr6_GL000254v2_alt    189747 60 +   4827813 ACCCCAGCGCGAGCGGAAGAGGCGGCTCGCGGGGGCGGGGCTTGGCTCGCGCTTCCAGCG
s panTro5.chr6              29177234 60 + 175400573 ACCCCAGCGCGAGCGGAAGAGGCGGCTCGCGGGGGCGGGGCTTGGCTCGCGCTTCCAGCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411295 60 + 173848474 ACCCCAGCGCGAGCGGAAGAGGCGGCTCGCGGGGGCGGGGCTTGGCTCGCGCTTCCAGCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5211930 60 +   6154872 ACCCCAGCGCGAGCGGAAGAGGCGGCTCGCGGGGGCGGGGCTTGGCTCGCGCTTCCAGCG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74213458 60 + 122973662 ACCCCAGCGCGAGCGGAAGAGGCGGCTCGCGGGGGCGGGGCTTGGCCCGCGCTTCCAGCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29391034 59 + 172585720 ACCCCGGCGCGAGCGGAAGAGGCGGCTC-GGGGGGCGGGGCTTGGCCCGCGCTTCTAGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29051905 60 - 170955103 ACCCCGGCGCGAGCGGAAGAGGCGGCTCGGGGGGGCGGGGCTTGGCCCGCGCTTCTAGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2042321 59 -   2996164 ACCCCGGCGCGAGCGGAAGAGGCGGCTC-GGGGGGCGGGGCTTGGCCCGCGCTTCTAGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1903904 60 -   2157725 ACCCCGGCGCGAGCGGAAGAGGCGGCTCGGGGGGGCGGGGCTTGGCCCGCGCTTCTAGCG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348142 60 -  71996105 ACCCCGGCGCGAGCGGAAGAGGCGGCTCGGGGGGGCGGGGCTTGGCCCGCGCTTCTAGCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2034555 60 +   2316924 ACCCCGGCGCGAGCGGAAGAGGCGGCTCGGGGGGGCGGGGCTTGGCCCGCGCTTCTAGCG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914160 60 -   3067355 ACCCCGGTGCGAGCGGAAGAGGCGGCTCGGGGGGGCGGGGCTTGGCCCGCGCTTCTAGCG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171437648 59 - 171630274 ACCCCGGCGCGAGCGGAAGAGGCGGCTC-GGCGGGCGGGGCTTGGCCCGCGCTCCCAGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            263438 59 -    375362 ACCCCGGCGCGAGCGGAAGAGGCGGCTC-GGCGGGCGGGGCTTGGCCCGCGCTTCCAGAG
i saiBol1.JH378348         M 923 C 0
s cebCap1.NW_016108108v1      261063 59 -    373274 ACCCCGGCGCGAGCGGAAGAGGCGGCTC-GGCGGGCGGGGCTTGGCCCGCGCTTCCCACG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      192521 49 -    285216 ACCCCGGCGCGAGCGGAAGAGGCGGCTC-GGCGGGGGG----------GCGCTTCCAGCG
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      991640 59 -   3516910 ACCCCGGCGCGAGCGGAAGAGGCGGCTC-TGGGGGCGGGACTTGGCCCGCGCCTCCAGCG
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1565416 58 -   2232465 ACCCCGGCGCCAGCGGAAGAGGCGGCTC--GGGGGCGGGGCTTGGCCCGCGCCTCCCAAG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25922955 55 +  26524999 --CCCGGCGCGAGCGGAAggggcggccc--gggggcggggcttggc-cgggcctcccgcg
i canFam3.chr35            C 0 I 717
e dasNov3.JH561790             77753 1001 -    302817 M

a score=563244.000000
s hg38.chr6_GL000254v2_alt    189807 61 +   4827813 AGTGACAAGATTTCGTGGCCTGGGGGCCTGAGCTG-TTTCCTCTTGGAAAGGCCGAGGAGGC
s panTro5.chr6              29177294 61 + 175400573 AGTGACAAGATTTCGTGGCCTCGGGACCTGAGCTG-TTTCCTCTTGGAAAGGCCGAGGAGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411355 61 + 173848474 AGTGACAAGATTTCGTGGCCTCGGGACCTGAGCTG-TTTCCTCTTGGAAAGGCCGAGGAGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5211990 61 +   6154872 AGTGACAAGATTTCGTGGCCTCGGGGCCTGAGCTGTTTTCCTCTTGGAAAGGCCGAGGA-GC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74213518 61 + 122973662 AGTGACAATATTTCGTGGCCTCGGGGCCTGAGCTG-TTTCCTTTTGGAAAGGCCGAGGAGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29391093 60 + 172585720 TGTGACAAGATTTCGTGGCCTCGGGGCCCGGGCTG-CTTTCTC-TAGAAAGGCCTGGGAGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29051965 60 - 170955103 TGTGACAAGATTTCGTGGCCTCGGGGCCCGGGCTG-CTTTCTC-TAGAAAGGCCTGGGAGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2042380 60 -   2996164 TGTGACAAGATTTCGTGGCCTCGGGGCCCGGGCTG-CTTTCTC-TAGAAAGGCCTGGGAGGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1903964 60 -   2157725 TGTGACAAGATTTCGTGGCCTCGGGGCCCGGGCTG-CTTTCTC-TGGAAAGGCCCAGGAGGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348202 60 -  71996105 TGTGACAAGATTTCGTGGCCTCGGGGCCCGGGCTA-CTTTCTC-TGGAAAGGCCCGGGAGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2034615 60 +   2316924 TGTGACAAGATTTCGTGGCCTCGGGGCCCGGGCTG-CTTTCTC-TGGAAAGGCCCAGGAGGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914220 60 -   3067355 TGTGACAAGATTTTGTGGCCTCGGGACCCGAGCTG-CTTTCTC-TGGAAAGGCCCAGGAAGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171437707 60 - 171630274 AGAGGCTAGATTTCGTGGCCTCGGGGCCTGGGAT--TTTCTTCTCGGAAAGGCCGAGGAGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            263497 60 -    375362 AGAGGCTGGCTTTCGGGGCCTCGGGGCCTGGGCT--TTTCCTCTTGGAAAGGCCGAGGAGGC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      261122 60 -    373274 AGAGGCTGGATTTTGTGGCCTCGGGGCCTGGGCT--TTACCTCTCGGAAAGGCCGAGGAGGC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      192570 60 -    285216 AGAGACTAGATTTCGTGGCCTCGGGGTCTGGGCT--TTTCCTCTcggagaggccggagaggc
i aotNan1.NW_018494050v1   C 0 I 110
s proCoq1.NW_012147953v1      991699 61 -   3516910 AGCGACAGGATTTCGTGGCTTCGGGGCCTGAGCTG-TTTCCTCCTGGAGAGGACAGGGAGGC
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1565474 61 -   2232465 AGCTGTTGGACTTAGTGGCCTCCGGGCTTCGGCTG-TTTCTTTCTACTGAGAACCCAGCTGC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             77753 1001 -    302817 M
e canFam3.chr35             25923010 717 +  26524999 I

a score=67316.000000
s hg38.chr6_GL000254v2_alt    189868 6 +   4827813 TCCGCC
s panTro5.chr6              29177355 6 + 175400573 TCCGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411416 6 + 173848474 TCCGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5212051 6 +   6154872 TCCGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74213579 6 + 122973662 TTCGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29391153 6 + 172585720 TCCGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29052025 6 - 170955103 TCCGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2042440 6 -   2996164 TCCGCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1904024 6 -   2157725 TCCGCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348262 6 -  71996105 TCCGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2034675 6 +   2316924 TCCGCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914280 6 -   3067355 TCCGCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171437767 6 - 171630274 TCTGCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            263557 6 -    375362 TCCGCC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      261182 6 -    373274 TCCGCC
i cebCap1.NW_016108108v1   C 0 I 172
s proCoq1.NW_012147953v1      991760 6 -   3516910 CCCGCC
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1565535 6 -   2232465 TGGGCC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             77753 1001 -    302817 M
e canFam3.chr35             25923010 717 +  26524999 I
e aotNan1.NW_018494050v1      192630 110 -    285216 I

a score=18189.000000
s hg38.chr6_GL000254v2_alt    189874 2 +   4827813 AC
s panTro5.chr6              29177361 2 + 175400573 AC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411422 2 + 173848474 AC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5212057 2 +   6154872 AC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74213585 2 + 122973662 AC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29391159 2 + 172585720 AC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29052031 2 - 170955103 AC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2042446 2 -   2996164 AC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1904030 2 -   2157725 AC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348268 2 -  71996105 AC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2034681 2 +   2316924 AC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914286 2 -   3067355 AC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171437773 2 - 171630274 GC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            263563 2 -    375362 GC
i saiBol1.JH378348         C 0 C 0
s proCoq1.NW_012147953v1      991766 2 -   3516910 AC
i proCoq1.NW_012147953v1   C 0 I 134
s otoGar3.GL873742           1565541 2 -   2232465 GC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             77753 1001 -    302817 M
e canFam3.chr35             25923010 717 +  26524999 I
e aotNan1.NW_018494050v1      192630 110 -    285216 I
e cebCap1.NW_016108108v1      261188 172 -    373274 I

a score=418186.000000
s hg38.chr6_GL000254v2_alt    189876 62 +   4827813 TCTCCTTTGGACTGGTCGCGCTGAAGCTCTATCCTAGGGCACTGGTCGCAAGAGCAGAT-------------------GGT-------------
s panTro5.chr6              29177363 62 + 175400573 TCTCCTTTGGGCTGGTCGCGCCGAAGCTCTATCCTAGGGCACTGGTCGCAAGAGCAGAT-------------------GGT-------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411424 62 + 173848474 TCTCCTTTGGGCTGGTCGCGCCGAAGCTCTATCCTAGGGCACTGGTCGCAAGAGCAGAT-------------------GGT-------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5212059 62 +   6154872 TCTCCTTTGGGCTGGTCGCGCCGAAGCTCTATCCTGGGGCACTGGTCGCAAGAGCAGAT-------------------GGT-------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74213587 62 + 122973662 TCTTCCTTGGGCGGATCGCGCCGAAGCTCTAGCCTAGGGCACTGGTCACAAGAGCAGAT-------------------GGT-------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29391161 62 + 172585720 TCTCCCTTGGGCGGGTCGCGCCGAAGCTCTAGCCTAGGGGACTGGTCACAAAAGCAGAT-------------------GGT-------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29052033 62 - 170955103 TCTCCCTTGGGCGGGTCGCGCCGAAGCTCTAGCCTAGGGGACTGGTCACAAAAGCAGAT-------------------GGT-------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2042448 62 -   2996164 TCTCCCTTGGGCGGGTCGCGCCGAAGCTCTAGCCTAGGGGACTGGTCACAAAAGCAGAT-------------------GGT-------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1904032 62 -   2157725 TCTCCCTTGGGCGGGTCGCGCCGAAGCTCTAGCTTAGGGGACTGGTCACAAAAGCAGAT-------------------GGT-------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348270 62 -  71996105 TCTCCCTTGGGCGGGTCGCGCCGAAGCTCTAGCCTAGGGAACTGGTCACAAAAGCAGAT-------------------GGT-------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2034683 62 +   2316924 TCTCCCTTGGGCGGGTCGCGCCGAAGCTCTAGCCTAGGGGACTGGTCACAAAAGCAGAT-------------------GGT-------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914288 62 -   3067355 TCTCCCTTGGGCGGGTCGCGCCGAAGCTCTAGCCTAGGGGACTGGTCACAAAAGCAGAT-------------------GGT-------------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171437775 61 - 171630274 GGTCCC-TGGCCCGGTCGCGCCGAAGCTCCAGCCTAGGGGTCGGGGCCCGAGAGCCGGC-------------------GCT-------------
i calJac3.chr4             C 0 I 32
s saiBol1.JH378348            263565 61 -    375362 GGTCCC-TGCGCGGGTCGCGCCGAAGCTCCAGCCTCGGCGACGGAACCCGAGAGCAGGT-------------------GCT-------------
i saiBol1.JH378348         C 0 I 32
s otoGar3.GL873742           1565543 88 -   2232465 CAGCCCTTGGGCTGAACGCTCCAAAGGTTCTGCCT------CGGGTCACGGGAGCAGGTTCCGTCTCTGGGGCGCGGCGGTGACGTTAATCCCT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             77753 1001 -    302817 M
e proCoq1.NW_012147953v1      991768 134 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e aotNan1.NW_018494050v1      192630 110 -    285216 I
e cebCap1.NW_016108108v1      261188 172 -    373274 I

a score=480228.000000
s hg38.chr6_GL000254v2_alt    189938 52 +   4827813 GCCACACGCTCCGGGCCTA----CAAACTTCAGCGGCTGCCGGGCCCGGGCCCCTC
s panTro5.chr6              29177425 52 + 175400573 GCCACACGCTCCGGGCCTA----CAAACTTCAGCGGCTGCCGGGCCCGGGCCCCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411486 52 + 173848474 GCCACACGCTCCGGGCCTA----CAAACTTCAGCGGCTGCCGGGCCCGGGCCCCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5212121 52 +   6154872 GCCACACGCTCCGGGCCTA----CAAACTTCAGCGGCTGCCGGGCCCGGGCCCCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74213649 52 + 122973662 GCCACACGCTCCGGGCCTA----TAAACTTCTGCGGCTGCCGGGCCCGGGCCCCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29391223 52 + 172585720 GCCACACGCTCCGGGCCTA----CAAGCTTCCGCGACTGCCGGGCCCAGGCCCCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29052095 52 - 170955103 GCCACACGCTCCGGGCCTA----CAAGCTTCCGCGACTGCCGGGCCCAGGCCCCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2042510 52 -   2996164 GCCACACGCTCCGGGCCTA----CAAGCTTCCGCGACTGCCGGGCCCAGGCCCCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1904094 52 -   2157725 GCCACACGCTCCGGGCCTA----CAAGCTTCCGCGACTGCCGGGCCCAGGCCCCTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348332 52 -  71996105 GCCACACGCTCCGGGCCTA----CAAGCTTCCGCGACTGCCGGGCCCAGGCCCCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2034745 52 +   2316924 GCCACACGCTCCGGGCCTA----CAAGCTTCCGCGACTGCCGGGCCCAGGCCCCTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914350 52 -   3067355 GCCACACGCTCCGGGCCTA----CAAGCTTCCGCGAATGCCGGGCCCAGGCCCCTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171437868 51 - 171630274 GCCACGCGCTCCGGGCCTA----TAGGCTTCCGCGGCTGCCGGGCCG-GGCCCCGA
i calJac3.chr4             I 32 C 0
s saiBol1.JH378348            263658 51 -    375362 GCCACGCGCTCCGGGCCTA----CAGGCTTCCGCGGCTGCCGCGCCC-GGCCCCGG
i saiBol1.JH378348         I 32 C 0
s aotNan1.NW_018494050v1      192740 50 -    285216 GCCACGCGCTCCGGGCCTA----CAGGCTTCCGCGGCTGCCGGGCC--GGCCCCGA
i aotNan1.NW_018494050v1   I 110 C 0
s otoGar3.GL873742           1565631 52 -   2232465 GCCACACGCTTTGGGCCTACTTCCAAGCTTCCGTAGCTGACGGGCCTAGATC----
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             77753 1001 -    302817 M
e proCoq1.NW_012147953v1      991768 134 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e cebCap1.NW_016108108v1      261188 172 -    373274 I

a score=364417.000000
s hg38.chr6_GL000254v2_alt    189990 40 +   4827813 GTCTTTTGTTGGGTTTCCTCTTGGTG-CCAGGTCTCAGCC-C
s panTro5.chr6              29177477 40 + 175400573 GTCTTTTGTTGGGTTTCCTCTTGGTG-CCAGGTCTCAGCC-C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411538 40 + 173848474 GTCTTTTGTTGGGTTTCCTCTTGGTG-CCAGGTCTCAGCC-C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5212173 40 +   6154872 GTCTTTTGTTGGGTTTCCTCTTGGTG-CCAGGTCTCAGCC-C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74213701 40 + 122973662 GTCTTTTGTTGGGTTTCCTCTTGGTG-CCAGGTCTCAGCC-C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29391275 41 + 172585720 GTGTTTAGTTGGGTTTCTTCTTGGTGCCCAGGTCTCAGCC-C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29052147 41 - 170955103 GTGTTTTGTTGGGTTTCTTCTTGGTGCCCAGGTCTCAGCC-C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2042562 41 -   2996164 GTGTTTTGTTGGGTTTCTTCTTGGTGCCCAGGTCTCAGCC-C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1904146 41 -   2157725 GTCTTTTGTTGGGTTTCTTCTTGGTGCCCAGGTCTCAGCC-C
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348384 41 -  71996105 GTGTTTTGTCGGGTTTCTTCTTGGTGCCCAGGTCTCAGCC-C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2034797 41 +   2316924 GTCTTTTGTTGGGTTTCTTCTTGGTGCCCAGGTCTCAGCC-C
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914402 41 -   3067355 GTCTTTTGTTGGGTTTCTTCTTGGTGCCCAGGTCTCAGCC-C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171437919 39 - 171630274 GTCTTT-GTTCGGTTTCCTTTTGGTGCCTGGGTCCCAGCC--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            263709 39 -    375362 GTCTTT-GTTCGGATTCCTTTTGGTGCCTGGGTCTCAGCC--
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      192790 40 -    285216 GTCTTT-GTTCGGTTTCCTTTTGGTGCCTGGGTCTCAGCCC-
i aotNan1.NW_018494050v1   C 0 I 7
s proCoq1.NW_012147953v1      991902 41 -   3516910 GTCTTTTGTTGGGTTTCTTCTTGGTGCCCAGCCCTCAGCC-C
i proCoq1.NW_012147953v1   I 134 C 0
s otoGar3.GL873742           1565683 39 -   2232465 GTC-TTTGTTGGGTTTCTTC-TGGTGCCCAGGGCTTAGCT-C
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             77753 1001 -    302817 M
e canFam3.chr35             25923010 717 +  26524999 I
e cebCap1.NW_016108108v1      261188 172 -    373274 I

a score=70304.000000
s hg38.chr6_GL000254v2_alt    190030 8 +   4827813 CTGCAAAA
s panTro5.chr6              29177517 8 + 175400573 CTGCAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411578 8 + 173848474 CTGCAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5212213 8 +   6154872 CTGCAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74213741 8 + 122973662 CTGCAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29391316 8 + 172585720 CTGCTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29052188 8 - 170955103 CTGCTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2042603 8 -   2996164 CTGCTAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1904187 8 -   2157725 CTGCTAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348425 8 -  71996105 CTGCTAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2034838 8 +   2316924 CTGCTAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914443 8 -   3067355 CTGCTAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171437958 8 - 171630274 CTGCAGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            263748 8 -    375362 CTGCAGAA
i saiBol1.JH378348         C 0 C 0
s proCoq1.NW_012147953v1      991943 8 -   3516910 CTGCAAGA
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1565722 8 -   2232465 CTGCAAGA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             77753 1001 -    302817 M
e canFam3.chr35             25923010 717 +  26524999 I
e aotNan1.NW_018494050v1      192830 7 -    285216 I
e cebCap1.NW_016108108v1      261188 172 -    373274 I

a score=68661.000000
s hg38.chr6_GL000254v2_alt    190038 13 +   4827813 G-AAAGCTGGCTTT
s panTro5.chr6              29177525 13 + 175400573 G-AAAGCCGGCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411586 13 + 173848474 G-AAAGCCGGCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5212221 13 +   6154872 G-AAAGCTGGCTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74213749 13 + 122973662 G-AAAGCTGGCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29391324  9 + 172585720 G-A----TGGCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29052196  9 - 170955103 G-A----TGGCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2042611  9 -   2996164 G-A----TGGCTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1904195 13 -   2157725 G-AAAGCTGGCTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348433 13 -  71996105 G-AAAGCTGGCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2034846 13 +   2316924 G-AAAGCTGGCTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914451 13 -   3067355 G-AAAGCTGGCTTT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012147953v1      991951 13 -   3516910 G-AAAGCTGGCTTT
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1565730 14 -   2232465 GAAAAGCTGTTTTT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             77753 1001 -    302817 M
e canFam3.chr35             25923010 717 +  26524999 I
e saiBol1.JH378348            263756  0 -    375362 C
e aotNan1.NW_018494050v1      192830  7 -    285216 I
e cebCap1.NW_016108108v1      261188 172 -    373274 I
e calJac3.chr4             171437966  0 - 171630274 C

a score=7800.000000
s hg38.chr6_GL000254v2_alt    190051 1 +   4827813 g
s panTro5.chr6              29177538 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411599 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5212234 1 +   6154872 g
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74213762 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29391333 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29052205 1 - 170955103 g
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2042620 1 -   2996164 g
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1904208 1 -   2157725 g
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348446 1 -  71996105 g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2034859 1 +   2316924 g
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914464 1 -   3067355 g
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012147953v1      991964 1 -   3516910 G
i proCoq1.NW_012147953v1   C 0 I 110
e dasNov3.JH561790             77753 1001 -    302817 M
e canFam3.chr35             25923010 717 +  26524999 I
e saiBol1.JH378348            263756 0 -    375362 C
e otoGar3.GL873742           1565744 0 -   2232465 C
e aotNan1.NW_018494050v1      192830 7 -    285216 I
e cebCap1.NW_016108108v1      261188 172 -    373274 I
e calJac3.chr4             171437966 0 - 171630274 C

a score=1073984.000000
s hg38.chr6_GL000254v2_alt    190052 186 +   4827813 gccgcgcgcagtggctcgcgcctgtaatcccagcatttgggaggccaaggcaggtggatcacgaggtcaggagatcaagactatcctggccaacatggtaaaaccccatctctactaccaata-gaaaaattggccgggcgtggtggcaggcgcctgtagtctcagctactcag-gaggctgaggcag
s panTro5.chr6              29177539 186 + 175400573 gccgcgcgcagtggctcgcgcctgtaatcccagcatttgggaggccaaggcaggtggatcacgaggtcaggagatcaagactatcctggccaacatggtaaaaccccatctctactaaaaata-gaaaaattagccggacgtggtggcaggcgcctgtagtctcagctactcag-gaggctgaggcag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411600 186 + 173848474 gccgcgcgcagtggctcgcgcctgtaatcccagcatttgggaggccaaggcaggtggatcacgaggtcaggagatcaagactatcctggccaacatggtaaaaccccatctctactaaaaata-gaaaaattagccgggcgtggtggcaggcgcctgtagtctcagctactcag-gaggctgaggcag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5212235 186 +   6154872 gccgcgcgcagtggctcgcgcctgtaatcccagcatttgggaggccaaggcaggtggatcacgaggtcaggagatcaagactatcctggccaacatggtaaaaccccatctctactaaaaata-gaaaaattagccgggcgtggtggcaggcgcctgtagtctcagctactcag-gaggctgaggcag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74213763 188 + 122973662 gccgcgcgcagtggctcacgcctgtagacccctcatttgggaggccgagacgggtgaatcacgaggtcatgagatccagactatcctgaccagcacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcggagaggctgaggcag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29391334 186 + 172585720 gccgcgcgcagtggctcacgcctgtaatcccagcatttgggaggccgaggcgggtggatcacgaggtcaggagatcgagactatcctggccaacatggtaaaaccgcatctctactaaaaata-gaaaaattagccgggcgtggtggcaggcgcctgtagtcccagctacttag-gaggctgaggcag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29052206 186 - 170955103 gccgcgcgcagtggctcacgcctgtaatcccagcatttgggaggccgaggcgggtggatcacgaggtcaggagatcgagactatcctggccaacatggtaaaaccgcatctctactaaaaata-gaaaaattagccgggcgtggtggcaggcgcctgtagtcccagctacttag-gaggctgaggcag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2042621 186 -   2996164 gccgcgcgcagtggctcacgcctgtaatcccagcatttgggaggccgaggcgggtggatcacgaggtcaggagatcgagactatcctggccaacatggtaaaaccgcatctctactaaaaata-gaaaaattagccgggcgtggtggcaggcgcctgtagtcccagctacttac-gaggctgaggcag
i macNem1.NW_012011356v1   C 0 I 93
s cerAty1.NW_012001495v1     1904209 186 -   2157725 gccgtgcacagtggctcacgcctgtagtcccagcatttgggaggacgaggcgggtggatcacgaggtcaggagatcgagactatcctggccaacatggtaaaaccccatctctactaaaaaca-gaaaaattagccggaagtggtggcaggcgcctgtagtcccagctacttag-gaggctgaggcag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348447 186 -  71996105 gctgcgcgcagtggctcacgcctgtaatcccagcatttgggaggccgaggcgggtggatcacgagatcaggagatcgagactatcctggccaacatggtaaaaccccatctctactaaaaata-gaaaaattagccaggcatggtggcaggcgcctgtagtcccagctacttag-gaggctgaggcag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2034860 186 +   2316924 gccgcgcacagtggctcacgcctgtagtcccagcatttgggaggacgaggctggtggatcacgaggtcaggagatcgagactatcctggccaacatggtaaaaccccatctctactaaaaata-gaaaaattagccgggagtggtggcaggcgcctgtagtcccagctacttag-gaggctgaggcag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914465 186 -   3067355 gccgcgcgcagtggctcacgcctgtaattccagcatttgggaggccgaggcgggtggatcacgagatcaggagatcgagactatcctggccaacatggtaaaaccccatctctactaaaaata-gaaaaattagccgggcatggtggcaggcgcctgtagtcccagctacttag-gagactgaggcag
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             77753 1001 -    302817 M
e proCoq1.NW_012147953v1      991965 110 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e saiBol1.JH378348            263756   0 -    375362 C
e otoGar3.GL873742           1565744   0 -   2232465 C
e aotNan1.NW_018494050v1      192830   7 -    285216 I
e cebCap1.NW_016108108v1      261188 172 -    373274 I
e calJac3.chr4             171437966   0 - 171630274 C

a score=423592.000000
s hg38.chr6_GL000254v2_alt    190238 114 +   4827813 cagaatcccttgaacccaggaggcggaggttgcagtgacccgagat--cgccactgcactccagcctgcgggacagagggagactctgtctcaaaaaaaaaaaaaaaaaaaaaaga--
s panTro5.chr6              29177725 104 + 175400573 cagaatcccttgaacccaggaggcggaggttgcagtgacccgagat--cgccactgcactccagcctgcgggacagaggtagactctgtctc----------aaaaaaaaaaaaga--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411786  97 + 173848474 cagaatcccttgaacccaggaggcggaggttgcagtgacccgagat--cgccactgcactccagcctgcgggacagaggtagactctgtct-----------------acaaaaaa--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5212421 109 +   6154872 cagaatcgcttgaacccaggaggcggaggttgcagtgacccgagat--cgccactgcactccagcctgcgggacagagggagactctgtctc-----aaaaaaaaaaaaaaaaaga--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74213951 116 + 122973662 gagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaagaaaagaaaa--
i nomLeu3.chr1a            C 0 I 1330
s rheMac8.chr4              29391520 112 + 172585720 cagaatcgcttgaaccctggaggcggaggttgcagtgacccgagat--cgccactgcactccagcctgggcgacagagcgagactccgtcttg----aaaaaaaaagaaaagaagaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29052392 113 - 170955103 cagaatcgcttgaaccctggaggcggaggttgcagtgacccgagat--cgccactgcactccagcctgggcgacagagcgagactccgtcttga---aaaaaaaaagaaaagaagaaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1904395 111 -   2157725 cagaatcgcttgaacctgggaggcggaggttgcagtgacccgagat--cgccactgcactccagcctgggctacagagcgagactctgtctcg----gaaaaaaaagaaaa-aagaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348633 113 -  71996105 cagaatcgcttgaacccgggaggcggaggttgcagtgacccgagat--cgccactgcactccagcctgggcgacagagcgagactccatctcgg---aaaaaaaaagaaaagaagaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2035046 111 +   2316924 cagaatcgcttgaacctgggaggcggaggttgcagtgacccaagat--cgccactgcactccagcctgggctacagagcgagactctgtctcg-----aaaaaaaaagaaaaaagaaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914651 111 -   3067355 cagaatcgctggaacccgggaggcggaggttgcagtgacccgagat--cgccactgcactccagcctgggcaacagagcgagactcggtctcg----aaaaaaaaagaaaa-aagaaa
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             77753 1001 -    302817 M
e proCoq1.NW_012147953v1      991965 110 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e saiBol1.JH378348            263756   0 -    375362 C
e otoGar3.GL873742           1565744   0 -   2232465 C
e aotNan1.NW_018494050v1      192830   7 -    285216 I
e cebCap1.NW_016108108v1      261188 172 -    373274 I
e calJac3.chr4             171437966   0 - 171630274 C
e macNem1.NW_012011356v1     2042807  93 -   2996164 I

a score=5472.000000
s hg38.chr6_GL000254v2_alt    190352 11 +   4827813 aaCGAAAAAAT
s panTro5.chr6              29177829 11 + 175400573 aacgaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411883 11 + 173848474 aacgaaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5212530 11 +   6154872 aacgaaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH561790             77753 1001 -    302817 M
e proCoq1.NW_012147953v1      991965 110 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e saiBol1.JH378348            263756  0 -    375362 C
e otoGar3.GL873742           1565744  0 -   2232465 C
e aotNan1.NW_018494050v1      192830  7 -    285216 I
e cebCap1.NW_016108108v1      261188 172 -    373274 I
e calJac3.chr4             171437966  0 - 171630274 C
e colAng1.NW_012115566v1     1914762  0 -   3067355 C
e manLeu1.NW_012104165v1     2035157  0 +   2316924 C
e chlSab2.chr17             28348746  0 -  71996105 C
e cerAty1.NW_012001495v1     1904506  0 -   2157725 C
e macNem1.NW_012011356v1     2042807 93 -   2996164 I
e macFas5.chr4              29052505  0 - 170955103 C
e rheMac8.chr4              29391632  0 + 172585720 C
e nomLeu3.chr1a             74214067 1330 + 122973662 I

a score=109785.000000
s hg38.chr6_GL000254v2_alt    190363 13 +   4827813 GAAAGCTGGCTTT
s panTro5.chr6              29177840 13 + 175400573 gaaaGCTGGCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411894 13 + 173848474 gaaaGCTGGCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5212541 13 +   6154872 GAAAGCTGGCTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29391632 13 + 172585720 gaaaGCTGGCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29052505 13 - 170955103 gaaaGCTGGCTTT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1904506 13 -   2157725 gaaaGCTGGCTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348746 13 -  71996105 gaaaGCTGGCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2035157 13 +   2316924 gaaaGCTGGCTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914762 13 -   3067355 gaaaGCTGGCTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171437966 13 - 171630274 GAAAGCAGGCTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            263756 13 -    375362 GAAAGCTGGCTTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      261360 13 -    373274 GAAAGCTGGCTTT
i cebCap1.NW_016108108v1   I 172 C 0
s aotNan1.NW_018494050v1      192837 13 -    285216 GAAAGCTGGCTTT
i aotNan1.NW_018494050v1   I 7 C 0
e dasNov3.JH561790             77753 1001 -    302817 M
e proCoq1.NW_012147953v1      991965 110 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e otoGar3.GL873742           1565744  0 -   2232465 C
e macNem1.NW_012011356v1     2042807 93 -   2996164 I
e nomLeu3.chr1a             74214067 1330 + 122973662 I

a score=473599.000000
s hg38.chr6_GL000254v2_alt    190376 72 +   4827813 GTATAGGTGCTGGG----GAGCGCAAACACCTGGCCT-CCCCAAGAGGCTGGAGGATGAGGAGGGTCACCGACTGAG
s panTro5.chr6              29177853 72 + 175400573 GTATAGGTGCTGGG----GAGCGCAAACACCTGGCCT-CCCCAAGAGGCTGGAGGATGAGGAGGGTCACCGACTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411907 72 + 173848474 GTATAGGTGCTGGG----GAGCGCAAACACCTGGCCT-CCCCAAGAGGCTGGAGGATGAGGAGGGTCACCGACTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5212554 72 +   6154872 GTATAGGTGCTGGG----GAGCGCAAACACCTGGCCT-CCCCAAGAGGCTGGAAGATGAGGAGGGTCACAGACTGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29391645 72 + 172585720 ATATAGGTGCTGGG----GAGCGCAGACATCTGGCTT-CCCCAAGAGGCTGGAGGATGAGGAGGGTCACCGTCTGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29052518 72 - 170955103 ATATAGGTGCTGGG----GAGCGCAGACATCTGGCCT-CCCCAAGAGGCTGGAGGATGAGGAGGGTCACCGTCTGAG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1904519 72 -   2157725 GTATAGGTGCTGGG----GAGCGCAGACATCTGGCCT-CCCCAAGAGGCTGGAGGATGAGGAGGGTCACCGACTGAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348759 72 -  71996105 GTATAGGTGCTGGG----GAGCGCAGACATCTGGCCT-CCCCAAGAGGCTGGAGGATGAGGAGGGTCACCGACTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2035170 72 +   2316924 GTATAGGTGCTGGG----GAGCGCAGACATCTGGCCT-CCCCAAGAGGCTGGAGGATGAGGAGGGTCACCGACTGAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914775 72 -   3067355 GTATCGGTGCTGGG----GAGCGCAGACATCTGGCCT-CCCCAAGAGGCTGGAGGATGAGGAGGGTCACCGACTGAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171437979 72 - 171630274 GTGTGGATGCCGAGGAACGAACGGAGACATCTGGCCT-CCCCCGGAGTCTGGAGGAT---GAGGGTTGCGGACT-AG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            263769 69 -    375362 GTATGGGGGCCGAG----GAGCGGAGAAATCTGGCCT-CCCCCCGAGTCTGGAGGAT---GAGGGTTGCCGACTGAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      261373 68 -    373274 GTGTGGGTGCCGAG----GAGCGGAGACGTCTGGCC--CCCCGCGAGTCTGGAGGAT---GAGGGTTGCCGACTGAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      192850 70 -    285216 GTATGGGTGCCGAG----GAGCGGAGGCATCTGTCCTCCCCCGCGAGTCTGGAGGAT---GAGGGTTGCCGACTGAG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1565744 44 -   2232465 GTATCGATACTGGG----AAGAGCA--------------------------GAGGGT---GGGGGTAGCAGACTGAC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             77753 1001 -    302817 M
e proCoq1.NW_012147953v1      991965 110 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I
e nomLeu3.chr1a             74214067 1330 + 122973662 I

a score=201922.000000
s hg38.chr6_GL000254v2_alt    190448 24 +   4827813 C-CCACCTGATAAGTGAGGC-------CTTTT
s panTro5.chr6              29177925 24 + 175400573 C-CCACCTGATAAGTGAGGC-------CTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29411979 24 + 173848474 C-CCACCTGATAAGTGAGGC-------CTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5212626 24 +   6154872 C-CCACCTGATAAGTGAGGC-------CTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29391717 24 + 172585720 C-CCACCTGATAGGTGAGGC-------CTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29052590 24 - 170955103 C-CCACCTGATAGGTGAGGC-------CTTTT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1904591 24 -   2157725 C-CCACCTGATAGGTGAGGC-------CTTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348831 24 -  71996105 C-CCACCTGATAGGTGAGGC-------CTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2035242 24 +   2316924 C-CCACCTGATAGGTGAGGC-------CTTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914847 24 -   3067355 C-CCACCTGATAGGTGAGGC-------CTTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171438051 24 - 171630274 C-CCACCTGAGACGTGGGGC-------CTTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            263838 24 -    375362 C-CCACCTGATACGTGAGGC-------CTTTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      261441 24 -    373274 C-CCACCTGATACGTGAGGC-------CTCTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      192920 24 -    285216 C-CCACCTGATACGTGAGGC-------CTTTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1565788 25 -   2232465 CTCCACCTTGTTTGTGAGGT-------ACTTT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             78759 30 -    302817 C-CCACCTGGTACCCCGGGCAGATGCACTTT-
i dasNov3.JH561790         M 1001 C 0
e proCoq1.NW_012147953v1      991965 110 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I
e nomLeu3.chr1a             74214067 1330 + 122973662 I

a score=334758.000000
s hg38.chr6_GL000254v2_alt    190472 36 +   4827813 ATTAAACAGCCCCATTTGTAGGCACTTGCAGTTTTG
s panTro5.chr6              29177949 36 + 175400573 ATTAAACAGCCCCATTTGTAGGCACTTGCAGTTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29412003 36 + 173848474 ATTAAACAGCCCCATTTGTAGGCACTTGCAGTTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5212650 36 +   6154872 ATTAAACAGCCCCATTTGTAGGCACTTGCAGTTTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29391741 36 + 172585720 ATTAAATAGACCCATTTGTAGGCACTTGCAGTTTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29052614 36 - 170955103 ATTAAACAGACCCATTTGTAGGCACTTGCAGTTTTG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1904615 36 -   2157725 ATTAAACAGCCGCATTTGTAGGCACTTGCAGTTTTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348855 36 -  71996105 ATTAAACAGCCCCATTTGTAGGCACTTGCAGTTTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2035266 36 +   2316924 ATTAAACAGCCGCATTTGTAGGCACTTGCAGTTTTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914871 36 -   3067355 ATTAAACCGCCCGATTTGTAGGCACTTGCAGTTTTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171438075 36 - 171630274 ATTAAGCAGCCCCATTTGTAGGCACCTGCAGTTTCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            263862 36 -    375362 ATTAAACAGCCCCATTTGTAGGCACTTGCAGTTTCG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      261465 21 -    373274 ATTAAACAGCCCCATTTGTAG---------------
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      192944 36 -    285216 ATTAAACAGCCCCATTTGTAGGCACCTGCAGTTTCG
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      992075 36 -   3516910 ATTAAACAGACCCACTCACAGGCACTCGAAATTTTG
i proCoq1.NW_012147953v1   I 110 C 0
s otoGar3.GL873742           1565813 35 -   2232465 ATTAAACAGACCCCCTCACAGGCACTCGAAA-TTTG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             78789 36 -    302817 GTTCAGCAGCCCAATTTATAGGCACTCGCGATTTTG
i dasNov3.JH561790         C 0 I 412
e canFam3.chr35             25923010 717 +  26524999 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I
e nomLeu3.chr1a             74214067 1330 + 122973662 I

a score=33256.000000
s hg38.chr6_GL000254v2_alt    190508 3 +   4827813 TTT
s panTro5.chr6              29177985 3 + 175400573 TTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29412039 3 + 173848474 TTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5212686 3 +   6154872 TTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29391777 3 + 172585720 TTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29052650 3 - 170955103 TTT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1904651 3 -   2157725 TTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348891 3 -  71996105 TTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2035302 3 +   2316924 TTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914907 3 -   3067355 TTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171438111 3 - 171630274 TTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            263898 3 -    375362 TTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      261486 1 -    373274 --T
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      192980 3 -    285216 TTT
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      992111 3 -   3516910 TTT
i proCoq1.NW_012147953v1   C 0 C 0
s otoGar3.GL873742           1565848 3 -   2232465 TTT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             79237 3 -    302817 TTT
i dasNov3.JH561790         I 412 C 0
e canFam3.chr35             25923010 717 +  26524999 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I
e nomLeu3.chr1a             74214067 1330 + 122973662 I

a score=2766462.000000
s hg38.chr6_GL000254v2_alt    190511 290 +   4827813 AGAAAAAGAAA----GGTTTAATTATCAGAT---GGTAACATTTCTGTGTGTCAATAACaagc---ccag-----ttctgctacctctcacttgtgcccaagcaagttggtttaccattcattt---acctcagtttctcctcgtgtgaaatggggatgataattgtac-cGCAGT-AAGAAGTAGATTTCGTTACATCTTTTACTTTTTGAACCAT----AAGATTGTTTATCCATTAA----------AATGGTATTAAAAT--------------------------------GCCCACTACGTAGGGTTGTTGTATTGAGTAGCAA----CTAAAAATTGCTTGCTCCTTTCTGAA
s panTro5.chr6              29177988 290 + 175400573 AGAAAAAGAAA----GGTTTAATTATCAGAT---GGTAACATTTCTGTGTGTCAATAACaagc---ccag-----ttctgctacctctcacttgtgcccaagcaagttggtttaccattcattt---acctcagtttctcctcgtgtgaaatggggatgataattgtac-cGCAGT-AAGAAGTAGATTTCGTTACATCTTTTACTTTTTGAACCAT----AAGATTGTTTATCCATTAA----------AATGGTATTAAAAT--------------------------------GCCCACTACGTAGGGTTGTTGTATTGAGTAGCAA----CTAAAAATTGCTTGCTCCTTTCTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29412042 290 + 173848474 AGAAAAAGAAA----GGTTTAATTATCAGAT---GGTAACATTTCTGTGTGTCAATAACaagc---ccag-----ttctgctacctctcacttgtgcccaagcaagttggtttaccattcattt---acctcagtttctcctcgtgtgaaatggggatgataattgtac-cGCAGT-AAGAAGTAGATTTCGTTACATCTTTTACTTTTTGAACCAT----AAGATTGTTTATCCATTAA----------AATGGTATTAAAAT--------------------------------GCCCACTACGTAGGGTTGTTGTATTGAGTAGCGA----CTAAAAATTGCTTGCTCCTTTCTGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5212689 290 +   6154872 AGAAAAAGAAA----GGTTTAATTATCAGAT---GGTAACATTTCTGTGTGTCAATAACaagc---ccag-----ttctgctacctctcacttgtgcccaagcaagttggtttaccattcattt---acctcagtttctcctcgtgtgaaatggtgatgataattgtac-cGCAGT-AAGAAGTAGATTTCGTTACATCTTTTACTTTTTGAACCAT----AAGATTGTTTATCCATTAA----------AATGATATTAAAAT--------------------------------GCCCACTACGTAGGGTTGTTGTATTGAGTAGCAA----CTAAAAATTGCTTGCTCCTTTCTGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74215397 290 + 122973662 aagaaaagaaa----aGTTTCATTATCAGAT---GGTAACATTTCTGTGTGTCAGTAACaagc---ccag-----ttctgctacctctcacttgtgcccaagcaagttggtttaccattcattt---acctcagtttctcctcgtgtgaaatggggatgataattgtac-cGCAGT-AAGAAGTAGATTTCGTTACATCTTTTActttttgaaccat----aaggttgtttatccattaa----------aatagtaataaaat--------------------------------gcccactacatagggttgttgtATTGAGTAGCAA----CTAAAAATTGCTTGCTCCTTTCTGAA
i nomLeu3.chr1a            I 1330 C 0
s rheMac8.chr4              29391780 291 + 172585720 AGAAAAAGAAA----GGTTTAATTATCAGAT---GGTAACATTTCTGTGTGGCAATAACaagc---ccag-----ctctgctacctctcacttgtgcccaagcaagttggtttaccattcattt---acctcagtttctcctcgtgtgaaatggggatgataactgtac-cGCCGTAAAGAAGTAGATTTCGTTACATCTTTTACTTTTTGAACCAT----AAGGTTGTTTATCCATTAA----------AATAGTAACAAAAT--------------------------------GCCCATTACATAGGGTTGTTGTATTGAGGAGCAA----CTAAAAATTGCTTGCTCCTTTCTGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29052653 291 - 170955103 AGAAAAAGAAA----GGTTTAATTATCAGAT---GGTAACATTTCTGTGTGGCAATAACaagc---ccag-----ctctgctacctctcacttgtgcccaagcaagttggtttaccattcattt---acctcagtttctcctcgtgtgaaatggggatgataactgtac-cGCCGTAAAGAAGTAGATTTCGTTACATCTTTTACTTTTTGAACCAT----AAGGTTGTTTATCCATTAA----------AATAGTAACAAAAT--------------------------------GCCCATTACATAGGGTTGTTGTATTGAGGAGCAA----CTAAAAATTGCTTGCTCCTTTCTGAA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1904654 290 -   2157725 AGAAAAAGAAA----GGTTTAA-TATCAGAT---GGTAACATTTCTGTGTGGCAGTAACaagc---ccag-----ctctgctacctctcgcttgtgcccaagcaagttggtttaccattcattt---acctcagcttctcctcgtgtgaaatggggatgataactgtac-cGCAGTAAAGAAGTAGATTTCGTTACATCTTTTATTTTTTGAACCAT----AAGGTTGTTTATCTATTAA----------AATAGTAACAAAAT--------------------------------GCCCATGACATACGGTTGTTGTATTGAGGAGCAA----CTAAAAATCGCTTGCTCCTTTCTGAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28348894 295 -  71996105 AGAAAAAGAAA----GGTTTAATTATCAGAT---GGTAACATTTCTGTGTGGCAATAACaagc---ccag-----ctctgctacctctcgcttgtgcccaagcaagttggtttaccattcattt---acctcagtttctcctcgtgtgaaatggggatgataactgtac-cGCAGTAAAGAAGTAGATTTCGTTACATCTTTTACTTTTTGAACCAT----AAGGTTGTTTATCCATTAA----------AATAGTAACAAAAT--------------------------------GCCCGTTACATAGGGTTGTTGTATTGAGGAGCAACAACCTCAAAATTGCTTGCTCCTTTCTGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2035305 288 +   2316924 AGAAAAAGAAA----GGTTTAA-TATCAGAT---GGTAACATTTCTGTGTGGCAGTAACaagc---ccag-----ctctgctacctctcgcttgtgcccaagcaagttggtttaccattcattt---acctcagcttctcctcgtgtgaaatggggatgataaC--TAC-CGCAGTAAAGAAGTAGATTTCATTACATCTTTTATTTTTTGAACCAT----AAGGTTGTTTATCTATTAA----------AATAGTAACAAAAT--------------------------------GCCCATGACATAGGGTTGTTGTATTGAGGAGCAA----CTAAAAATCGCTTGCTCCTTTCTGAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1914910 291 -   3067355 AGAAAAAGAAA----GGTTTAATTATCAGAT---GGTAACATTTCTGCGTGGCAATAACaagc---ccag-----ctctgctacctctcgcttgtgcccaagcaagttggtttaccattcattt---acttcagtttctcctcgtgtgaaatggggatgataactgtac-cGCAGTAAAGAAGTAGATTTCGTTACATCTTTTACTTTTTGAACCAT----AAGGTTGTTTATCCATTAA----------AATAGTAACAAAAT--------------------------------GCCCATTACATAGGGTTGTTGTATTGAGGAGCAA----CTAAAAATTGCTTGCTCCTTTCTCAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171438114 270 - 171630274 AGA--------------------TATCAGAC---GGTAACGTTTCTGTGTTGCAATAACaagc---ccag-----ttctgctacttctctcctgtgctcaggcaagttggtttaccattcattt---acctcagtttctcc-cgtgtgaaatggggataat---TGTAC-CGCAGT-AAGAAGTACATTTCCTTACATCTTTTActttttgtaccat----agggttgtttatccattaa----------aatagtaataaaat--------------------------------gcccactacatagggttgttgtgCTGAGTAGCAA----CTACAAATTGCTTGCTCCTTTCTGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            263901 310 -    375362 AGAAAAAG--A----GGTTTAATTATCAGAC---GGTAACGTTTCTGTGTTGCAATAACAAGC---CCAG-----TT------CTTCTCTCCtgtgctaaggcaagttggtttacgattcattt---acctcagtttctcc-cgtgtgaaatgtggataat---TGTAC-CGCAGT-AAGAAGTACATTTCCTTACAACTTTTACTTTTTGTACCAT----AGGGTTGTTTATCCATTAA----------aatagtaataaaagtaataataaaaaatagtaataaaagtaataaaaaGCACAACATAGGGTGGTTGTGCTGAGTAGCAA----CTACAAATTGCTTGCTCCTTTCTGAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      261487 286 -    373274 AGAAAAAGAAA----GGTTTAATTATCGGAC---GGTAACGTTTCTGTGCTGCAATAACaagc---ccag-----ttctgctccttctctcttgtgctcaggcaagttggtttacgattcattt---acctgagtttctcc-cgtgtgaaatgggaataat---tgtac-cGCAGT-AAGAAGTACATTTCCTTACATCTTTTActttttgtttcat----agggttgtttatccattaa----------aatagcaataaaat--------------------------------gcccaccacatagggttgttgtgCTGAGTAGCAA----CTACAAATTGCTTGCTCCTTTCTGAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      192983 276 -    285216 AGAAAAAGAAA----GGTTTAGTTATCAGAC---GGTAACGTTTCTGTGTTGCAATAACAAGc---tcag-----tt---ctacttctgtcctgtgctcagggaagttggtttaccattcattt---acct--gtttctcc-cgtgtgaaatggggatgat---tgtac-cgCAGT-AAGAAGTACATTTCCTCTCATCTTTTActttttgtaccat----agggttgtttatccattaa----------aatagtaataaaat--------------------------------gcccactgcatagggttattgtgCTGAGTAGGAA----CTACAGATTGCTTGCTCCTTT-----
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      992114 288 -   3516910 AAAAACAGAAA----GATTTGATTATCAGAT---GGTAACA-TTCTGTGGggcagaattaggc---ccaa-----ttctgctacttctcatttgtgcccaagcaagttggtttac----cgttttgagcctcagtttctcctcctgtgacacggagatggtaattaaac-cctagcaaggtagtAGAATTCATTATATATTTTACTTTTTGAACCAT-----AGGATGTTTATCCATTAA----------AATAGTAATAAAAT--------------------------------GCCTACCGCATAGAGTGGTTGTATTGAGTAGGGC----CTAAAAATTCTTTGCTCGTTTCTGAA
i proCoq1.NW_012147953v1   C 0 I 2518
s otoGar3.GL873742           1565851 271 -   2232465 AGGAAAAAAAA----AA----------AGGT-----------TTCTGTGGGGCAGAAACaagc---ccag-----ttctgccacttctca-ttgtgcccaaacacgttggtttaccattcattctgagcctcagtttctctgcctctaacacggggatggtaattatac-cCCAGCAAGGAGGTAAACTTCCTTGTAATTTTCACTTTTTGAACCATAACCAAAGACGTTTATCTCTTAA----------AATAGT-----TTT--------------------------------GCCTACTCCACAGA---GTTGTATTGAGTAGAAT----ATAAAAACTCTTTGCTCCTTTCTGAA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             79240 278 -    302817 GGCAAAGGAAACTTTGTTTTATTTCTTAGAACAGGTTAACATTTCCCAAGGGCAGAAACAAGTCGGCCAGGCCCCTTCCACTAGTTCCCTTCtgtgcccaagcaggtttctcccccactgccat----cccaagttgcccctctggtaaaatggagataat---tatactccttgcaaggAGGGAGACTTCATTATGCTTTTTAGTTTTGGGACTGT-----AGGATATTTATCCATTAAAGAGGGTCCCAATGCTATTAAAAC--------------------------------CCTATTTTAATAGGCTCCTTGC----------------CTAA----------------------
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25923010 717 +  26524999 I
e macNem1.NW_012011356v1     2042807  93 -   2996164 I

a score=151012.000000
s hg38.chr6_GL000254v2_alt    190801 23 +   4827813 GTATAGAGAAACTAAGAATCCTG
s panTro5.chr6              29178278 23 + 175400573 GTATAGAGAAACTAAGAACCCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29412332 23 + 173848474 GTATAGAGAAACTAAGAATCCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5212979 23 +   6154872 GTATAGAGAGACTAAGAATCCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74215687 23 + 122973662 GTATAGAGAGACTAAGAATCCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29392071 23 + 172585720 GTATAGAGAGACTAAGAATCCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29052944 23 - 170955103 GTATAGAGAGACTAAGAATCCTA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1904944 23 -   2157725 GTATAGAGAGACTAAGAATCCTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28349189 23 -  71996105 GTATAGAGAGACTAAGAATCCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2035593 23 +   2316924 GTATAGAGAGACTAAGAATCCTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1915201 23 -   3067355 GTATAGAGAGACTAAGAATCCTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171438384  4 - 171630274 GCAT-------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            264211 19 -    375362 GCATAG----ACTAAGAATCCTG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      261773 19 -    373274 GCATAG----AGTAAGAATCCTG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      193259 17 -    285216 --ATAG----ACTAAGAATGCTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1566122 21 -   2232465 --AAAGGGAAACTGAAAATCCTG
i otoGar3.GL873742         C 0 I 1396
s dasNov3.JH561790             79518 22 -    302817 GTGCAG-GTACCTGAGACTCCTG
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      992402 2518 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I

a score=83407.000000
s hg38.chr6_GL000254v2_alt    190824 9 +   4827813 CGGTGACCC
s panTro5.chr6              29178301 9 + 175400573 CGGTGACCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29412355 9 + 173848474 CGGTGACCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5213002 9 +   6154872 CGGTGACCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74215710 9 + 122973662 CGGTGGCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29392094 9 + 172585720 CAGTGACCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29052967 9 - 170955103 CAGTGACCC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1904967 9 -   2157725 CGGTGACCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28349212 9 -  71996105 CGGTGACCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2035616 9 +   2316924 CGGTGACCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1915224 9 -   3067355 CGGTGACCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171438388 6 - 171630274 ---CGACCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            264230 9 -    375362 CGGCGACCC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      261792 9 -    373274 CGGCGACCC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      193276 9 -    285216 CGGCGACCC
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             79540 9 -    302817 CAGGGGCCC
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      992402 2518 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I

a score=349750.000000
s hg38.chr6_GL000254v2_alt    190833 45 +   4827813 AGGGTCTT-GGAGTCCCACAATACTCATTGTCTTATCATCCAGTAG
s panTro5.chr6              29178310 45 + 175400573 AGGGTCTT-GGAGTCCTACAATACTCATTGTCTTATCATCCAGTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29412364 45 + 173848474 AGGGTCTT-GGAGTCCCACAATACTCATTGTCTTATCATCCAGTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5213011 45 +   6154872 AGGGTCTT-GGAGTCCCACAGTACTCATTGTCTTATCATCCAGTAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74215719 45 + 122973662 AGGGTCTT-GGAGTCCCAGAATACTCATTGTCTCATCATCCAGTAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29392103 45 + 172585720 AGGGTCTT-GGAGTCCCACAATACTCGTTGTCTTATCATGCAGTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29052976 45 - 170955103 AGGGTCTT-GGAGTCCCACAATACTCGTTGTCTTATCATGCAGTAG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1904976 45 -   2157725 AGGGTCTT-GGAGTCCCACAGTACTCATTGTCTTATCATCCAGTAG
i cerAty1.NW_012001495v1   C 0 I 310
s chlSab2.chr17             28349221 45 -  71996105 AGGGTCTT-GGAGTCCCACAATACTCATTGTCTTATCATCCAGTAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2035625 45 +   2316924 AGGGTCTT-GGAGTCCCACAGTACTCATTGTCTTATCATCCAGTAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1915233 46 -   3067355 AGGGTGTTGGGAGTCCCACAGTACTCATTGTCTTATCATCCAGTAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171438394 20 - 171630274 AGGGTCTT-GGAGG-CCGCAGA------------------------
i calJac3.chr4             C 0 I 305
s saiBol1.JH378348            264239 45 -    375362 AGGGTCTT-GGAGGCCCGCAGTTCTCATGGTCTTAGCATCCAGTGG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      261801 45 -    373274 AGGGTCTT-GGTAGCCCGCAGTTCTCATTGTCTTAGCATCCAGTAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      193285 44 -    285216 AGGGTCTT-GGAGGCCCGCAATTCTCATTCTCTTACCAT-CAGTAG
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      994920 45 -   3516910 AGGGTCTT-GCAGTCCCACAATACTCATTCTCATATCATCCAGTAG
i proCoq1.NW_012147953v1   I 2518 C 0
s dasNov3.JH561790             79549 21 -    302817 AGGCTCTG-------------------------CATCAGCTGGGAG
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25923010 717 +  26524999 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I

a score=10920.000000
s hg38.chr6_GL000254v2_alt    190878 1 +   4827813 A
s panTro5.chr6              29178355 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29412409 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5213056 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74215764 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29392148 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29053021 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1905331 1 -   2157725 A
i cerAty1.NW_012001495v1   I 310 C 0
s chlSab2.chr17             28349266 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2035670 1 +   2316924 A
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1915279 1 -   3067355 A
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            264284 1 -    375362 A
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      261846 1 -    373274 A
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      193329 1 -    285216 A
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      994965 1 -   3516910 A
i proCoq1.NW_012147953v1   C 0 C 0
s dasNov3.JH561790             79570 1 -    302817 A
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25923010 717 +  26524999 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e calJac3.chr4             171438414 305 - 171630274 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I

a score=1140055.000000
s hg38.chr6_GL000254v2_alt    190879 136 +   4827813 CCTCCAGCATTTTTATGTTGCTTTCTTATCCCTTACTTGGTGTTTCCTAGTTTTCTTTGAGA-TTTTCTCAATATTGTCTTGCTATCTGAGCAAGGCGGGCTTCTGCTTCCAGACCATCACTTTATTTTTATTTTTT
s panTro5.chr6              29178356 136 + 175400573 CCTCCAGCATTTTTATGTTGCTTTCTTATCCCTTACTTGGTGTTTCCTAGTTTTCTTTGAGA-TTTTCTCAATATTGTCTTGCTATCTGAGCAAGGCGGGCTTCTGCTTCCAGACCATCACTTTATTTTTATTATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29412410 136 + 173848474 CCTCCAGCATTTTTATGTTGCTTTCTTATCCCTTACTTGGTGTTTCCTAGTTTTCTTTGAGA-TTTTCTCAATATTGTCTTGCTATCTGAGCAAGGCGGGCTTCTGCTTCCAGACCATCACTTTATTTTTATTATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5213057 136 +   6154872 CCTCCAGCATTTTTATGTTGCTTTCTTATCCCTTACTTGGTGTTTCCTAGTTTTGTTTGAGA-TTTTCTCAATATTGTCTTGCTATCTGAGCAAGGCGGGCTTCTGCTTCCAGACCATCACTTTATTTTTATTTTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74215765 136 + 122973662 CCTCCAGCATTTTTATGTTGCTTTCTTATCCCTTACTTGGTGTTTCCTAGTTTTCTTTGAGA-TTTTCTCAATATTATCCTGCTATCTGAGCAAGGCGGGCTTCTGCTTCCAGACCATCACTTTATTTTTATTTTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29392149 135 + 172585720 CCTCCAGCATTTTTAAGTTGCTTTCTTATCCCTTGCTTGATGTCTCCTGCTTTTCTTTGAGA-TTTTCTCAATATTGTCCTGCTATCTGAGCAATACGGGCTTCTGCTTCCAGACC-TTACTTGATTTTTATTTTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29053022 135 - 170955103 CCTCCAGCATTTTTAAGTTGCTTTCTTATCCCTTGCTTGATGTCTCCTGCTTTTCTTTGAGA-TTTTTTCAATATTGTCCTGCTATCTGAGCAATACGGGCTTCTGCTTCCAGACC-TCACTTGATTTTTATTTTAT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1905332 134 -   2157725 CCTCTGGCATTTTTAAGTTGCTTTCTTATCACTTGCTTGATGTCTCCTACTTTTCTTCGAGA-TTTTCTCAATATTGTCTTGCTATCTGAGCAATACGGGCTTCTGCTTCCAGATC-TCACTTAA-TTTTATTTTAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28349267 135 -  71996105 CCTCCAGCATTTTTAAGTTGCTTTCTTATCCCTTGCTTGATGTCTCCTACTTTTCTTCGAGA-TTTTCTCAATATTGTCCTGCTATCTGAGCAATATGGGCTTCTGCTTCCAGACT-TCATTTGATGTTTATTTTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2035671 134 +   2316924 CCTCCGGCATTTTTAAGTTGCTTTCTTATCACTTGCTTGATGTCTCCTACTTTTCTTCGAGA-TTTTCTCAATATTGTCTTGCTATCTGAGCAATACGGGCTTCTGCTTCCAGATC-TCACTTGAT-TTTATTTTAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1915280 135 -   3067355 CCTCCAGCATTTTTAAGTTGCTTTCTTATCCCTTACTTGGTGTCTCCTAGTTTTCTTCGAGA-TTTTCTCAATATTGTCGTGCTATCTGAGCAATACGGGCTTCTGCTTCCAGACC-TCACTTGATTTTTATTTTAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171438719 136 - 171630274 CCGCCAGCATTTTTATGTTACGTTCTTATCCCTTAC-TGGCGTTTCCTAGTTTTCTTTGAAATTTTTCTCAAAATTATCCTGCTGTCTGAGCAAGACAGGCTTCTGCTTCCAGATGATCACTTTATTTTTATTTTTT
i calJac3.chr4             I 305 C 0
s saiBol1.JH378348            264285 137 -    375362 CCGCCAGCATTTTTAGGTTGGTTTCTTCTCCCTTACTTGGCGTTTCCTAGTTTACTTTGAGATTTTTCTCAAAATTATCCTGCTATCTGAGCAAGACAGGCTTCTGCTTCCAGATAATCACTTCATTTTTATTTTTT
i saiBol1.JH378348         C 0 I 631
s cebCap1.NW_016108108v1      261847 131 -    373274 CCGCCAGCATTTTTAGGTTGCTTTCTTATCCCATACTTGGCGTTTCCTAGTATTCTTTGAGATTTTTCTCAAAATTATCCTGCTATCTGAGCAAGACAGGCTTCTGCTTCCAGGTGATCACTTTATTTTTT------
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      193330 137 -    285216 CCGCTAGCATTTTTATGTTGCTTTCTTATCCCTTACTTGGCGTTTCCTAGTTTTCTTTGAGATTTTTCTTAAAATTATCCTGCTGTCTGAGCAAGACAAACTTCTGCTTCCAGATGATCCCTTTATTTTTATTTTTT
i aotNan1.NW_018494050v1   C 0 I 1
s proCoq1.NW_012147953v1      994966 122 -   3516910 CTTCCAGCTCTTTTGTGTTGCTGCTTCATCCCTGATTTGGTAATTCTTAATTTTCTTTGGGA-TTTTCTCAGTATTGTCCTTGTATCTGAGCAAGG-GGTCTTCTGCTTCCAAACTATCACTTT-------------
i proCoq1.NW_012147953v1   C 0 C 0
s dasNov3.JH561790             79571  99 -    302817 ---CTTAGATCTAT-TGTTGCTCCCTCACCCCTGCCTCGGTATTTCCTCGTTGT-------A-TTTTCTCAGCATCGTTTTTGTATATAAGCAGGAGGGGCCTGTGCTCCC--------------------------
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25923010 717 +  26524999 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e macNem1.NW_012011356v1     2042807  93 -   2996164 I

a score=74751.000000
s hg38.chr6_GL000254v2_alt    191015 16 +   4827813 Ca-----aagtgaaagtaaga
s panTro5.chr6              29178492 12 + 175400573 TA---------TCaagtaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29412546 12 + 173848474 TA---------TCaagtaaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5213193 21 +   6154872 TTTTTCaaagtgaaagtaaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74215901 21 + 122973662 TTTTTCaaagtgaaagtaagt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29392284 21 + 172585720 TTTTTCaaagtgaaagtacgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29053157 21 - 170955103 TTTTTCaaagtgaaagtacgt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1905466 21 -   2157725 TTTTTCaaagtgaaagtacgt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28349402 21 -  71996105 TTTTTCACagtgaaagtatgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2035805 21 +   2316924 TTTTTCaaagtgaaagtacgt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1915415 21 -   3067355 TTTTTCaaagtgaaagtatgt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171438855 16 - 171630274 -----CAAAGTGAAAGTAAGT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      261978 16 -    373274 -----CAAAGTGAAAGTAAGT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      193468 16 -    285216 -----Caaagtgaaagtaagt
i aotNan1.NW_018494050v1   I 1 C 0
e dasNov3.JH561790             79670  0 -    302817 C
e proCoq1.NW_012147953v1      995088  0 -   3516910 C
e canFam3.chr35             25923010 717 +  26524999 I
e saiBol1.JH378348            264422 631 -    375362 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I

a score=18375.000000
s hg38.chr6_GL000254v2_alt    191031 3 +   4827813 tta
s panTro5.chr6              29178504 3 + 175400573 tta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29412558 3 + 173848474 tta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5213214 3 +   6154872 taa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74215922 3 + 122973662 tta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29392305 3 + 172585720 tta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29053178 3 - 170955103 tta
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1905487 3 -   2157725 tta
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28349423 3 -  71996105 tta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2035826 3 +   2316924 tta
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1915436 3 -   3067355 tta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171438871 3 - 171630274 tta
i calJac3.chr4             C 0 I 333
s saiBol1.JH378348            265053 2 -    375362 tt-
i saiBol1.JH378348         I 631 C 0
s cebCap1.NW_016108108v1      261994 3 -    373274 TTA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      193484 3 -    285216 tta
i aotNan1.NW_018494050v1   C 0 I 4
e dasNov3.JH561790             79670 0 -    302817 C
e proCoq1.NW_012147953v1      995088 0 -   3516910 C
e canFam3.chr35             25923010 717 +  26524999 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I

a score=19110.000000
s hg38.chr6_GL000254v2_alt    191034 2 +   4827813 tt
s panTro5.chr6              29178507 2 + 175400573 tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29412561 2 + 173848474 tt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5213217 2 +   6154872 tt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74215925 2 + 122973662 tt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29392308 2 + 172585720 tt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29053181 2 - 170955103 tt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1905490 2 -   2157725 tt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28349426 2 -  71996105 tt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2035829 2 +   2316924 tt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1915439 2 -   3067355 tt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171439207 2 - 171630274 tt
i calJac3.chr4             I 333 C 0
s saiBol1.JH378348            265055 2 -    375362 tt
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      261997 2 -    373274 TT
i cebCap1.NW_016108108v1   C 0 I 70
s aotNan1.NW_018494050v1      193491 2 -    285216 tt
i aotNan1.NW_018494050v1   I 4 C 0
e dasNov3.JH561790             79670 0 -    302817 C
e proCoq1.NW_012147953v1      995088 0 -   3516910 C
e canFam3.chr35             25923010 717 +  26524999 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I

a score=53616.000000
s hg38.chr6_GL000254v2_alt    191036 8 +   4827813 aagaaaat
s panTro5.chr6              29178509 8 + 175400573 aagaaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29412563 8 + 173848474 aagaaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5213219 8 +   6154872 aagaaaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74215927 8 + 122973662 aagaaagt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29392310 8 + 172585720 aagaaagt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29053183 8 - 170955103 aagaaagt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1905492 8 -   2157725 aagaaagt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28349428 8 -  71996105 aagaaagt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2035831 8 +   2316924 aagaaagt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1915441 8 -   3067355 gagaaagt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171439209 8 - 171630274 aagaaagt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            265057 8 -    375362 taaaaagc
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      193493 8 -    285216 aaaaaagt
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             79670 0 -    302817 C
e proCoq1.NW_012147953v1      995088 0 -   3516910 C
e canFam3.chr35             25923010 717 +  26524999 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e cebCap1.NW_016108108v1      261999 70 -    373274 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I

a score=4670904.000000
s hg38.chr6_GL000254v2_alt    191044 515 +   4827813 aaaggaataaagaatggctactccgtaggcaaagcagcccACATCATcactttagagagttccac---tctggtcctcttccccatgggacaagaagtctgagggattaagtggacttgccagccccaaacccacatctaccttCTCAACCATACTC-TGAGTACCCA-GTCATTCAAATTCCAGTCCCAAATAGCTTTAGCCCATTTCCAGAAAAATGTAGAGTACTTGGGCCAGGCCACA--CCACAGTCTGGTCTTGGTTTGAGATTGGGTCAACAATGAAATTTGTAAGAATTAAAGGAT----ATGTCTATTCTCATTTACTCCAAAAAGGACTAATAAGCATTGCAATACAGTGCAGAAATATGAGAGATATGGATAGGTAGATAAAGCTGCCCTTCATCTTCTCCTTTACTTGGGGGAT----------------GCAAGCCTTGAGTTTGGCTTTGTTTTTCAGAATTGATTGTGTTTATCTTACCAACCCTTTATTACCTCTGGAGG-CAGGTGACCTGGGGGTAAAGAAAGGT
s panTro5.chr6              29178517 515 + 175400573 aaaggaataaagaatggctactccgtaggcaaagcagcccACATCATcactttagagagttccac---tctggtcctcttccccatgggacaagaagtctgagggattaagtggacttgccagccccaaacccacatccaccttCTCAACCATACTC-TGAGTACCCA-GTCATTCAAATTCCAGTCCCAAATAGCTTTAGCCCATTTCCAGAAAAATGTAGAGTACTTGGGCCAGGCCACA--CCACAGTCTGGTCTTGGTTTGAGATTGGGTCAACAACGACATTTGTAAGAATTAAAGGAT----ATGTCTATTCTCATTTACTCCAAAAAGGACTAATAAGCATTGCAATACAGTGCAGAAATATGAGAGATATGGATAGGTAGATAAAGCTGCCCTTCATCTTCTCCTTTACTTGGGGGAT----------------GCAAGCCTTGAGTTTGGCTTTGTTTTTCAGAATTGATTGTGTTTATCTTACCAACCCTTTATTACCTCTGGAGG-CAGGTGACCTGGGGATAAAGAAAGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29412571 515 + 173848474 aaaggaataaagaatggctactccgtaggcaaagcagcccACATCATcactttagagagttccac---tctggtcctcttccccatgggacaagaagtctgagggattaagtggacttgccagccccaaacccacatccaccttCTCAACCATACTC-TGAGTACCCA-GTCATTCAAATTCCAGTCCCAAATAGCTTTAGCCCATTTCCAGAAAAATGTAGAGTACTTGGGCCAGGCCACA--CCACAGTCTGGTCTTGGTTTGAGTTTGGGTCAACAACGACATTTGTAAGAATTAAAGGAT----ATGTCTATTCTCATTTACTCCAAAAAGGACTAATAAGCATTGCAATACAGTGCAGAAATATGAGAGCTATGGATAGGTAGATAAAGCTGCCCTTCATCTTCTCCTTTACTTGGGGGAT----------------GCAAGCCTTGAGTTTGGCTTTGTTTTTCAGAATTGATTGTGTTTATCTTACCAACCCTTTATTACCTCTGGAGG-CAGGCGACCTGGGGATAAAGAAAGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5213227 514 +   6154872 aaaggaataaagaatggctactccgtaggcaaagcagcccACATCATCACTTTAGAGAGTTCCAC---TCTGGTCCTCTTCCCCATGGGACAAGAAGTCTGAGGGATTAAGTGGACTTGCCAGCCCTAAACCCACATCCACCTTCTCAACCATACTC-TGAGTACCCA-GTCATTCAAATTCCAGTCCCAAATAGCCTTAGCCCATTTCCAGAAAAATGTAGAGTACTTGGGCCAGGCCACA--CCACAGTCTGGTCTTGGTTTGAGATTGGGTCAACAATGAAATTTGTAAGAATTAAAGGAT----ATGTCTATTCTCATTTACTCCAAAAAGGACTAATAAGCATTACAATACAGTGCAGAAATATGAGAGATATGGATAGGTAAATCAAGCTGCCCTTCATCTTCTCCTTTACTTGGGGGAT----------------GCAAGCCTTGAGTTTGGCTTTGTTTTTCAGAATTGATTGTGTTTTTCTTACCAACCCTTTATTACCTCTGGAGG-CAGGTGACCTGGGG-TAAAGAAAGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74215935 516 + 122973662 aaagaaataaagaatgggtactccgtaggcaaagcagcccACATCATcgctttagagagttccac---tctggtcctcttccccatgggacaagaagtctgagggactaagtggacttgccagccccaaacccacatccaccttctcaaccatactcttgagtaccca-gTCGTTCAAAATCCAGTCCCAAATAGCCCTAGCCCATTTCCAGAAAAATGTAGAGTACTTGGGCCAGGCCACG--CCACAGTCTGGTCTTGGTTTGAGATTGAGTCAACGATGAAATTTGTAAGAATTAAAGGAT----ATGTCTGTTCTCATTTACTCCAAAAAGGACTAATAAGCATTGCAATACAGTGCAGAAATATGAGAGATATAGATAGGTAGATAAAGCTGCCCTTCATCTTCTCCCTTACTTGGGGGAT----------------GCAAGCCTTGAGTTTGGCTTTGTTTTTCAGAATTGATTGTGTTTATCTTACCAACCCTTTATTACCTCTGGAGG-CAGGAGACCTGGGGGTAAAGAAAGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29392318 512 + 172585720 aaaggaataaagaatggctactccataggcaaagcagcccACATCATCACTTT--AGAGTTCCCC---TCTGGTCCTCTTCCCCATGGGACAAGAAGTCTGAGGGACTAAGTGCACTTGCCAACCCCAAACCCACATCCACCTT-GCAACCATACTC-TGAGTACCCA-GTCGTTCAAATTCCAGTACCAAATAGCCCTAGCCCATTTCCAGAAAAACATAGCGTACTTGGGCCAGGTCACA--CAACAGTCCGGTCTTGGATTGAGATTGGGTCAACAATGCAATTTGTAAGAATTAAAGGAT----ATGTCTCCTTTCGTTTACTCCAAAAAGGACTAATAAACATTACAATACAGTGCAGAAATATGAGAGATATACACAGGTAGATAAAGCTGCCCTTCATCTTCCCCCTTACTTGCAGGAT----------------GCAAGCCTTGAGTTTGGCTTTGTTTTTCAGAATTGATTGTGTTTATCTTACCAACCCTTTATAACCTCTGGAGG-CAGGTGACCTGGGGATAAAGAAAGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29053191 526 - 170955103 aaaggaataaagaatggctactccataggcaaagcagcccACATCATCACTTT--AGAGTTCCCC---TCTGGTCCTCTTCCCCATGGGACAAGAAGTCTGAGGGACTAAGTGCACTTGCCAACCCCAAACCCACATCCACCTT-GCAACCATACTC-TGAGTACCCA-GTCGTTCAAATTCCAGTACCAAATAGCCCTAGCCCATTTCCAGAAAAAC--AGCGTACGTGGGCCAGGTCACA--CAACAGTCCGGTCTTGGATTGAGATTGGGTCAACAATGCAATTTGTAAGAATTAAAGGAT----ATGTCTCCTTTCGTTTACTCCAAAAAGGACTAATAAACATTACAATACAGTGCAGAAATATGAGAGATATACACAGGTAGATAAAGCTGCCCTTCATCTTCCCCCTTACTTGCAGGATTTGCTTGAGACCTCCAGCCAAACTTGAGTTTGGCTTTGTTTTTCAGAATTGATTGTGTTTATCTTACCAACCCTTTATAACCTCTGGAGG-CAGGTGACCTGGGGATAAAGAAAGGT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1905500 506 -   2157725 aaaggaataaagaatggctactccataggcaaagcagcccACATCATCACTTT--AGAGTTCCCC---TCTGGTCCTCTTCCCCATGGGACAAGAAGTCTGAGGGACTAAGTGGACTTGCCAACCCCAAACCCCCATCCACCTT-GCAACCATACTC-TGAGTACCCA-GTCGTTCAAATTCCAGTACCAAATAGCCCTAGCCCATTTCCAGAAAAACATAGCATACTTGGGCCAGGCCACA--CGACAGTCCGGTCTTGGTTTGAGATTGGATCAACAATGCAATTTGTAAGAATTAAAGGAT----ATGTCTCCTCTCGTTTACTCCAAAAAGGACTAATAAGCATTACAATACAGTGCAGAAATATGAGAGAT------AGGTAGATAAAGCTGCCCTTCATCTTCCCCCTTACTTGCGGGAT----------------GCAAGCCTTGAGTTTGGCTTTGTTTTTCAGAATTGATTGTGTTTATCTTACCAACCCTTTATAACCTCTGGAGG-CAGGTGACCTGGGGATAAAGAAAGGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28349436 512 -  71996105 aaaggaataaagaatggctactccataggcaaagcagcccACATCATCACTTT--AGAGTTCCCC---TCTCGTCCTCTTCCCCATGGGACGAGAAGTCTGAGGGACTAAGTGCACTTGCCAACCCCAAACCCACATCCACCTT-GCAACCATACTC-TGAGTACCCA-GTCGTTCAAATTCCAGTACCAAATAGCCCAAGCCCATTTCCAGAAAAACATAGCGTACTTGGGCCAGGACACA--CGACAGTCCGGTCTTGGTTTGAGATTAGGTCAACAATGCAATTTGTAAGAATTAAAGGAT----ATGTCTCCTCTCGTTTACTCCAAAAAGGACTAATAAGCATTACAATACAGTACAGAAATATGAGAGATATAGATAGGTAGATAAAGCTGCCCTTCATCTTCCCCCTTACTTGCGAGAT----------------GAAAGCCTTGAATTTGGCTTCGTTTTTCAGAATTGATTGTGTTTATCTTACCAACCCTTTATAACCTCTGGAGG-CAGGTGACCTGGGGATAAAGAAAGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2035839 506 +   2316924 aaaggaataaagaatggctactccataggcaaagcagcccACATCATCACTTT--AGAGTTCCCC---TCTGGTCCTCTTCCCCATGGGACAAGAAGTCTGAGGGACTAAGTGGACTTGCCAACCCCAAACCCCTATCCACCTT-GCAACCATACTC-TGAGTACCCA-GTCATTCAAATTCCAGTACCAAATAGCCCTAGCCCATTTCCAGAAAAACATAGCATACTTGGGCCAGGCCACA--CGACAGTCCGGTCTTGGTTTGAGATTGGATCAACAATGCAATTTGTAAGAATTAAAGGAT----ATGTCTCCTCTCGTTTACTCCAAAAAGGACTAATAAGCATTACAATACAGTGCAGAAATATGAG------AGATAGGTAGATAAAGCTGCCCTTCATCTTCCCCCTTACTTGCGGGAT----------------GCAAGCCTTGAGTTTGGCTTTGTTTTTCAGAATTGATTGTGTTTATCTTACCAACCCTTTATAACCTCTGGAGG-CAGGTGACCTGGGGATAAAGAAAGGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1915449 512 -   3067355 aaaggaataaagaatggctactccataggcaaagcagcccACATCATCACTTT--AGAGTTCCCC---TCTGGTCCTCTGCCCCATGGGACGAGAAGTCTGAGGGACTGAGTGGACTTGCCAACCCCAAACCCACATCCACCTT-GCAACCATACTC-TGAGTACCCA-GTCGTTCACATTCCAGTACCAAATAGCCCTAGCCCATTTCCAGAAAAACATAGTGTACTTGGGCCAGGCCACA--AGACAGTCCGGTCTTGGTTTGAGGTTGGGTCAACAATGCAATTTGTAAGAATTAAAGGAT----ATGTCTCCTCTCGTTTACTCCAAAAAGGACTAATAAGCATTACAATACAGTGCAGAAATATGAGAGATATAGATAGGTAGATAAAGCTGCCCTTCATCTTCCCCCTTACTTGTGGGAT----------------GCAAGCCTTGAGTTTGGCTTTGTTTTTCAGAATTGATTGTGTTTATCTTACCAACCCTTTATAACCTCTGGAGG-CAGGTGACCTGGGGATAAAGAAAGGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171439217 515 - 171630274 aaggtaacaaagaatggctaccccgtaggcggagcggcccACATCATcgctttagagaggtctac-actctgcttctcttccgcaggggacagaaagtctgagggcctcagtggacttgccaaccacaaacccacatccaccttctcaaccatactc-tgggtatctg-gtcgttcagatttcagtcccaaatagccctaacccATTTCCAGAATGATGCAGTGTACCTGGCCCAGGCCACA--CCACAGCCTGGTCTTGGTGTGAGATTGGGTCAACATTGAAATTTGTAAGAATTAGAGAATAAGTACGTCAGTTCTGATTTACTCCAAAAAGGACTAGTAAGCATTGCAACACA-CGCCGAAATATGAGAGATACAGATAGGCAGATAAAGCTGCCCTTTAGCTGCCTCCTGATTTGGGGGAT----------------ACAAGTCTAGAGTTTGGCTTTGTTGTTAAGA----ATTGTTTTTATCCTACCAACCCTTTATGACCTCTGGAGA-CAGGTGACCTGGGG-TAAAGAAACGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            265065 520 -    375362 aatggaataaaaaatggctactccgtaggtggagcagcccACATCATTGTTTTAGAGAGTTCTACTACTCTGGTCCTCTTCCGCAGGGGACAAGAAGTCTAAGGACCTAAGTGGACTTGCCAACCCCAAACCCACATCCACCTTCTCAACCATACTC-TGAGTATCCG-GTCTTTCAGATTCCAGTTCCAAATAGCCCTAACCCATTTCCAGAATGATGCAGAGTACCTGGGCCAGGACACA--CCACAGTCTGGTCTTGGTTTGAGATTGGGTCAACATTGAAATTTGTAAGAATTAGAGAATAAGGACGTCAGTTCTGATTTACTCCAAAAAGGACTAGTAAGCACTGCAATACA-TGCCGAAATATGAGAGATACAGGCAGGTAGATAAAGCTGCCCTTCATCTGCCTCTTGATTTGGGGGAT----------------GCAAGTCTGGACTTTGGCTTTGTTGTTCAGAGTTGATTGATTTTGTTTTACCAACCCTTTATTACCTCTGGAGA-CAGGTGACCTGGGG-TAAAGAAAGGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      262069 518 -    373274 aacggaataaagaatggctactccataggtgcagcag--cACATCATCGTTTTAGAGAGTTCTACTTCTCTGGTCCTCTTCCGCAGGGGACAAGCAGTCTGAGGGCCTAAGTGGACTTCCCAACCCCAAACCCACATCCACCTTCTCAACCATACTC-TGAGTATCCA-GTCGTTCAGATTCCAGTTCCAAATAGCCCTAACCCATTTCCAGAATGATGCAGAGTACCTGGGCCAGGCCACA--CCACAGTCTGGTCTTGGTTTGAGATTGGGTCAACATTGAAATTTGTAAGAATTAGAGAATAAGGACGTCAGTTCTGATTTACTCCAAAAAGGACTAGTAAGCATTGCAATACA-TGCCGAAATATGAGAGATACAGATAGGTAGGTAAAGCAGCCCTTCATCTGCCTCCCGATTTGGGGGAT----------------GCAAGTCTAGAGTTTGGCTTTCTTGTTCAGAGTTGATTGTTTTTGTCTTACCAACCCTTTATGACCTCTGGAGA-CAGGTGACCTGGGG-TAAAGAAAGGT
i cebCap1.NW_016108108v1   I 70 C 0
s aotNan1.NW_018494050v1      193501 516 -    285216 aacggaataaagaatggcaactccgtaggtggagcagcccACATTATcgctttagagagttctactactctggtcctcttccgcaggggacaagaagtctgagggcctaagtagacttgccaaccccaaacccacatccaccttctcaaccatactc-tgagtatccg-gtcgttcagattccggtcccaaatagccctaacccatttccagAATGATGCAGAGTACCTGGGCCAGGCCACA--CCACAGTCTGGTCTTGGTTTGAGATTGGGTCAACATTGAAATTTGTAAGAATTAGAGAGTAAGTACGTCAGTTCTGATTTACTCCAAAAAGGACTAGTAAGCATTGCAATACA-TTCCGAAATACAAGAGATACAGATAGGTAGATAAAGCTGCCCTTCATCTGCCTCCTGATTTGGGGGAT----------------GCAAGTCTAGAGTTTGGCTTTGTTGTTCAGAATTGATTGTTTTTATCTTACCAACCCTTTATGACCTCTGGAGA-CAGGTGACCTGGGG-TAAAGAA----
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      995088 456 -   3516910 -------------------------------------------------------AGAGTTCCAC---TCTGGTCCTCTTCCCCATGGGACAGGAAGTCTGAGGGACTAAGTGGACTTGCCAACCCGAAGCCCACATCCCCCTTCTCAATCACACTC-TGAGTATCCA-GTCTTTGAGATTCCAGGCTCAAGTAGCCCCAGCCCTCGTCCAGAAAAATGTAGATTAATTGGACTAGGCCACA--CCATAGTCTGGTTTTGGTTTGAGATTGGGTCAAAATTGACATTTGGAGGAACTACAGGAT----GCTTCTACTGTGATTTACTCCAAAAAAGATTAATAAGCATTGAA--ACTGTATGTAAATATGAGAGATACAGACAGG-AGATCAGGATGTCCTTCATCT-CCCCCTTATCTAAAGGAT----------------GCAGGCCTGGAGTTTGGCTTTGTTTCTGAGGATTGATGGTGTTTATCTTCTCAACCCTTTATAACCCCTGTAAG-CAGGTGCCCTGGAGGTAAAGAAGGGT
i proCoq1.NW_012147953v1   C 0 I 95
s dasNov3.JH561790             79670 409 -    302817 -------------------------------------CCCACG-----------------CCCAC---CCCCAGCCTCTCTTTCATTGAGCAAG-ACTTGGCGGAACTGAGCAGACTTGCCAGCTCCAGGCCCACGCCC-CCTTCCCCACCACGTTC-TGAGTACACAGGTCTTGGAAATTCCAGGCCCAGAGAGCTCCAGCCCAATTCCAGAAAAATGTCAGGTACTGGCGCGAGGGCATGTCCTAGAGTCTGGTCTTTCTTTGAACT--GGTCAAAATTGAAATTTGGAGGAAATTGGAGTT--------------------ACTCC-CAAAGGAGCAATAAGCATTACGATA------------------GGTGAAGAGGAGCAGATAAGGCTGCCCACCAGCT----CCTTATCCG--GGAT----------------GTGGATCCGGAGTTTGACTTTGTTTTCCAGGACTGATGCTG--TATCTT---GACTCCTCCAAATCCCTGGGGGTTTGGTGA--TGGGT----GGAAAAGT
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25923010 717 +  26524999 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e macNem1.NW_012011356v1     2042807  93 -   2996164 I

a score=54930.000000
s hg38.chr6_GL000254v2_alt    191559 5 +   4827813 AGAAC
s panTro5.chr6              29179032 5 + 175400573 AGAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413086 5 + 173848474 AGAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5213741 5 +   6154872 AGAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74216451 5 + 122973662 AGAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29392830 5 + 172585720 AGAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29053717 5 - 170955103 AGAAC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1906006 5 -   2157725 AGAAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28349948 5 -  71996105 AGAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2036345 5 +   2316924 AGAAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1915961 5 -   3067355 AGAAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171439732 5 - 171630274 AGAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            265585 5 -    375362 AGAAC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      262587 5 -    373274 AGAAC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      194017 5 -    285216 AGAAC
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             80079 5 -    302817 GGAAC
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      995544 95 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I

a score=2355285.000000
s hg38.chr6_GL000254v2_alt    191564 301 +   4827813 Aggcagggtgtggtggctcatgcctgtaatcccatcactttgggaggctgaggcgggtggatcgcttaagcccaggagttcaagaccagcctgaccaacatggtgaaaccccgtctctaccaaaaatacaaaaactcgatgggcacagtggtgcacacctgtaatcccaactactctggagactgaggctggagaatcacttgagcct----gggagacagaggttgcagggagccgagatcaggccactgcactccagcctgggcaacagagcaagactccgtttcaaaaaagaaaacaa-aagg
s panTro5.chr6              29179037 301 + 175400573 Aggcagggtgtggtggctcatgcctgtaatcccatcactttgggaggctgaggtgggtggatcgcttaagcccaggagttcaagaccagcctgaccaacatggtgaaaccccgtctctaccaaaaatacaaaaactcgatgggcacggtggtgcacacctgtaatcccaactactctggagactgaggctggagaatcacttgagcct----gggagacagaggctgcagggagccgagatcaggccactgcactccagcctgggcaacagagcaagactccgtttcaaaaaagaaaacaa-aagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413091 299 + 173848474 Aggcagggtgtggtggctcatgcctgtaatcccatcactttgggaggctgaggtgggtggatcgcttaagcccaggagttcaagaccaacctgaccaacatggtgaaaccccgtctctaccaaaaatacaaaaactcgatgggcacggtggtgcacacctgtaatcccaactactctggagactgaggctggagaatcacttgagcct----gggagac--aggttgcagggagccgagatcaggccactgcactccagcctgggcaacagagcaagactccgtttcaaaaaagaaaacaa-aagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5213746 301 +   6154872 Aggcagggtgtggtggctcatgcctgtaatcccatcactttgggaggctgaggcgggcgggtcgcttaagcccaggagttcaagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaactcgatgggcatggtggtgcacacctgtaatcccaactactctggagactgaggctggagaatcacttgagcct----gggagacagaggttgcagggagccaagatcaggccactgcactccagcctgggcaacagagcaagactccgtttcaaaaaagaaaaaaa-aagg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74216456 301 + 122973662 Aggcagggtgtggtggctcatgcctgtaatcccatcactttgggaggctgaggcgggcggatggcttaagcccaggagttgaagactagcctgcccaacatggtgataccctgtctctaccaaaaatacaaaaactcgctgtgcacggtggtgctcacctgtaatcccaactaccctggagactgaggctggagaatcactcgagcct----gggagacagaggttgcagggagccgagatcagaccactgcactccagcctgggcaacagagcaagactccgtttcaaaaaagaaaaaaa-aagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29392835 305 + 172585720 Aggcagggtgccttggctcatgcctgtaatcccatcactttgggaggctgaggtgggcggattgcttaagcccaggagttcaagaccagcctgaccaacatggtgaaaccccgtctctaccaaaaatacaaaaactcgctgggcatggtggtgcacacctgtaattccaagtactctggaggctgagtctggagaatcatttgagcccgggcgggagacagaggttacagggagccgagaccgggccactacactccagcctaggcaacagagcgaggctttgtctcaaaaaagaaaaaaa-agga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29053722 305 - 170955103 Aggcagggtgccttggctcatgcctgtaatcccatcactttgggaggctgaggtgggcggattgcttaagcccaggagttcaagaccagcctgaccaacatggtgaaaccctgtctctaccaaaaatacaaaaactcgctgggcatggtggtgcacacctgtaattccaagtactctggaggctgagtctggagaatcatttgagcccgggcgggagacagaggttacagggagccgagaccgggccactacactccagcctaggcaacagagcgaggctttgtctcaaaaaagaaaaaaa-agga
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1906011 306 -   2157725 Aggcggggtgccttggctcatgcctgtaatcccatcactttgggaggctgaggtgggcggattgcttaagcccaggagttcaagaccagcctgaccaacatggtgaaaccccgtctctaccaaaaatacaaaaactcgctgggcatggtggtgcacacctgtaattccaagtactccggaggctgaggctggagaatcatttgagcctgggtgggagacagaggttacagggagccgagaccgggccactgcactccagcctgggcaacagagcgaggctctgtctcaaaaaagaaaaaaagagga
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28349953 305 -  71996105 Aggcagggtgccttggctcatgcctgtaatcccgtcactttgggaggctgaggtgggcggattgcttaagcccaggagttcaagaccagcctgaccaaaatggtgaaaccccgtctctaccaaaaatacaaaaactcgctgggcatggtggtgcacacctgtaattccaagtactccggaggctgaggctggagaatcatttgagcccgggcgggagacagaggttacagggagccgagactgggccactgcactccagcctgggcaacagagcaaggctctgtctcaaaaaagaaaaaaa-agga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2036350 304 +   2316924 Aggcggggtgccttggctcatgcctgtaatcccatcac--tgggaggctgaggtgggcggattgcttaagcccaggagttcaagaccagcctgaccaacatggtgaaaccccgtctctaccaaaaatacaaaaactcgctgggcatggtagtgcacacctgtaattccaagtactctggaggctgaggctggagaatcatttgagcctgggcgggagacagaggttacagggagccgagaccgggccactgcactccagcctgggcaacagagcgaggctctgtctcaaaaaagaaaaaaagagga
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1915966 305 -   3067355 AGACAgggtgccttggctcatgcctgtaatcccatcactttgggaggctgaggtgggcggattgcttaagcccaggagttcaagaccagcctgaccaacatggtgaaaccccgtctctaccaaaaatatggaaactcgctgggcatggtggtgcacacctgtaattccaagtactccggaggctgaggctggagaatcatttgagcccgggcgggagacagaggttacagggagctgagacccggccactgcactccagcctgggcaacagagcaaggctctgtctcaaaaaagaaaaaaa-agga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171439737 281 - 171630274 AGGTAgggtgtggtggtttatgcctgtaatcccagcgctttgggaggctgaggtggg---------------cgggagtttgagaccagcctgaccaacatggtgaaaccctgtctttaccaaaaatatacaaaccagccgagcgcaatggtgcacacctgtaatctcaacta---tggaggct-aacctggagaatcagttgagccc----aggaggcagaggttgcagtgagctgagattgagccactgcactccagcctgggtgacaaatcaagactccacctcaagaaaagagaaaa-aGA-
i calJac3.chr4             C 0 I 985
s saiBol1.JH378348            265590 297 -    375362 AGGTAgggtgtggtggcttatgcctgtaatcccagcactttgggaggctgaggtgggcggattgcttaagcccgggagtttgagactagcctgaccaacatagtgaaaccctgtctctaccaaaaatataaaaattagccgggtgcggtggcgcacacctgtaatctcaactg---tagaggctgaggctggagtatcagttgagccc----aggaggcagaggttgccgtgagcttagatcaagtcactgcactccagcctgggtgacaaagtgagactccacctccagaaaagggaaaa-aga-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      262592 287 -    373274 AGGTAgggtgtagtggcttatgcctgtaatcccagcgctttgggaggctgaggtgggcggattgcttaagcccgggagcttgagaccagcctgaccaacatggtgaaaccctgtctctaccaaaaatttaaaaactagccaggcgcagtggtgcacgcctgtaacctcaacta---tggaggctgaggctggaaaatcagttgagccc----aggaggcagaggttgcagtgagctgagatcgagtcactgcactccagcctgggtgac--agtgagactccacctcaagaaaagg----------
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      194022 296 -    285216 AGGTAgggtgtggtggtttatgcctgtaatcccagcgctttgggaggctgaggtgggcggattgtgtaagcccgggagtctgagaccagcctgaccaacatggtgaaaccctgtctctaccaaaaatataaaaactagctgggcgcagtggtgcacacctgtaatctcaacta---tggaggctgaggctggagaatcagttgagccc----aggaggcagaggttgcagtgagctgagatcgaatcaccgcacttcagcctgggtgacaaagcgagactccacctcaagaaaagggaaaa-ag--
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             80084   0 -    302817 C
e proCoq1.NW_012147953v1      995544  95 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e macNem1.NW_012011356v1     2042807  93 -   2996164 I

a score=115118.000000
s hg38.chr6_GL000254v2_alt    191865 23 +   4827813 aa----aa-----aaTTTTAAAAAGGTAGAAC
s panTro5.chr6              29179338 23 + 175400573 aa----aa-----aaTTTTAAAAAGGTAGAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413390 23 + 173848474 aa----aa-----aaTTTTAAAAAGGTAGAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214047 23 +   6154872 aa----aa-----aaTTTTAAAAAGGTAGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74216757 27 + 122973662 aaaaagaa-----aaTTTAAAAAAGGTACAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29393140 23 + 172585720 aa----aa-----aaTTTTTAAAAGGTAAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29054027 23 - 170955103 aa----aa-----aaaTTTTAAAAGGTAAAAC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1906317 23 -   2157725 aa----aa-----aaTTTTTAAAAGGTAAAAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28350258 23 -  71996105 aa----aa-----aaTTTTTAAAAGGTAAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2036654 23 +   2316924 aa----aa-----aaTTTTTAAAAGGTAAAAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1916271 23 -   3067355 aa----aa-----aaTTTTTAAAAGGTAAAAC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            265887 18 -    375362 --------------aaattaaaaaGGTAGAAC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      262879 26 -    373274 ------gaaaaataaaTTTTAAAAGGTAGAAC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      194318 19 -    285216 -------------aaaTTTTAAAAGGTAGAAC
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             80084  0 -    302817 C
e proCoq1.NW_012147953v1      995544 95 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e calJac3.chr4             171440018 985 - 171630274 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I

a score=251525.000000
s hg38.chr6_GL000254v2_alt    191888 33 +   4827813 AAAATAGATGAGTTAGGTAGAACAAGGTGGGAG
s panTro5.chr6              29179361 33 + 175400573 AAAATAGATGAGTTGGGTAGAACAAGGTGGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413413 33 + 173848474 AAAATAGATGAGTTGGGTAGAACAAGGTGGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214070 33 +   6154872 AAAATAGATGAGTTGGGTATAACAAGGTGGGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74216784 33 + 122973662 AAAATAGATGAGTTGGGTAGAACAAGGTGAGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29393163 33 + 172585720 AAAATAGATGAGTTGGGTAGAACAGAGTGGGAG
i rheMac8.chr4             C 0 I 391
s macFas5.chr4              29054050 27 - 170955103 AAAATAGATGAGTTGGGTAGAACAGAG------
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1906340 33 -   2157725 AAAATAGATGAGTTGGGTAGAACAGAGTGGGAG
i cerAty1.NW_012001495v1   C 0 I 5277
s chlSab2.chr17             28350281 33 -  71996105 AAAATAGATGAGTTGGGTAGAACAGAGTGGGAG
i chlSab2.chr17            C 0 I 420
s manLeu1.NW_012104165v1     2036677 33 +   2316924 AAAATAGATGAGTTGGGTAGAACAGAGTGGGAG
i manLeu1.NW_012104165v1   C 0 I 487
s colAng1.NW_012115566v1     1916294 33 -   3067355 AAAATAGATGAGTTGGGTAGAACAGAGTGGGAG
i colAng1.NW_012115566v1   C 0 I 406
s saiBol1.JH378348            265905 33 -    375362 AAAATTGATGAGTTGGGTACAACAGGGTGGGAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      262905 33 -    373274 AAAATCGATGAGTTGGGTACAACAGGGTAGGAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      194337 33 -    285216 AAAATCGATGAGTTGGGTACAACAGGGTGGGAG
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             80084 33 -    302817 AAAACTGATGGATGAGGTAGGGTGGGATTGGGG
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      995544 95 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e calJac3.chr4             171440018 985 - 171630274 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I

a score=56105.000000
s hg38.chr6_GL000254v2_alt    191921 22 +   4827813 T-GGGGGAAAGGGAATATTTACA-
s panTro5.chr6              29179394 22 + 175400573 T-GGGGGAAAGGGAATATTTACA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413446 22 + 173848474 T-GGGGGAAAGGGAATATTTACA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214103 22 +   6154872 T-GGGGGAAAGGGAATATTTACA-
i gorGor5.CYUI01015250v1   C 0 I 1
s nomLeu3.chr1a             74216817 23 + 122973662 TAGGAGGAAAGGGAATATTTACA-
i nomLeu3.chr1a            C 0 I 1
s macFas5.chr4              29054077 18 - 170955103 T-GGGAGAA----Aatatttata-
i macFas5.chr4             C 0 I 374
s saiBol1.JH378348            265938 22 -    375362 T-AGGGGGAAGGGAGTATTTACG-
i saiBol1.JH378348         C 0 I 1
s cebCap1.NW_016108108v1      262938 22 -    373274 T-AGGGGGAAGGGAGTATTTACA-
i cebCap1.NW_016108108v1   C 0 I 1
s aotNan1.NW_018494050v1      194370 22 -    285216 T-AGGGGGAAGGGAGTATTTACA-
i aotNan1.NW_018494050v1   C 0 I 1
s dasNov3.JH561790             80117 23 -    302817 -ATGGGGAAAGGGAAGATTTACTC
i dasNov3.JH561790         C 0 C 0
e proCoq1.NW_012147953v1      995544 95 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1916327 406 -   3067355 I
e manLeu1.NW_012104165v1     2036710 487 +   2316924 I
e chlSab2.chr17             28350314 420 -  71996105 I
e cerAty1.NW_012001495v1     1906373 5277 -   2157725 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I
e rheMac8.chr4              29393196 391 + 172585720 I

a score=75413.000000
s hg38.chr6_GL000254v2_alt    191943 28 +   4827813 TTAGCAATCTCTAACAGTCCCCTTCC-TT
s panTro5.chr6              29179416 28 + 175400573 TTAGCAATCTCTAACAGTCCCCTTCC-TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413468 28 + 173848474 TTAGCAATCTCTAACAGTCCCCTTCC-TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214126 29 +   6154872 TTAGCAATCTCTAACAGTCCCCTTCCTTT
i gorGor5.CYUI01015250v1   I 1 C 0
s nomLeu3.chr1a             74216841 28 + 122973662 TTAGCAATCTCTAACAGTCCCCTTCC-TT
i nomLeu3.chr1a            I 1 C 0
s saiBol1.JH378348            265961 28 -    375362 TTAGCAATCCCTAACAGCCCCTTTCC-TT
i saiBol1.JH378348         I 1 C 0
s cebCap1.NW_016108108v1      262961 28 -    373274 TTAGCAATCCCTAACAGCACCTTTCC-TT
i cebCap1.NW_016108108v1   I 1 C 0
s aotNan1.NW_018494050v1      194393 28 -    285216 TTAGCAATCCCTAACAGCTCCTTTCC-TT
i aotNan1.NW_018494050v1   I 1 C 0
s dasNov3.JH561790             80140 28 -    302817 TTGGTAATCTCTACCAGCTCCCTTGT-TT
i dasNov3.JH561790         C 0 I 9105
e proCoq1.NW_012147953v1      995544 95 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1916327 406 -   3067355 I
e manLeu1.NW_012104165v1     2036710 487 +   2316924 I
e chlSab2.chr17             28350314 420 -  71996105 I
e cerAty1.NW_012001495v1     1906373 5277 -   2157725 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I
e macFas5.chr4              29054095 374 - 170955103 I
e rheMac8.chr4              29393196 391 + 172585720 I

a score=70040.000000
s hg38.chr6_GL000254v2_alt    191971 34 +   4827813 TT-TTTTAATTTAAAAAAGTTACACCTGTCTTTTT
s panTro5.chr6              29179444 34 + 175400573 TT-TTTTAATTTAAAAAAGTTACACCTGTCTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413496 34 + 173848474 TT-TTTTAATTTAAAAAAGTTACACCTGTCTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214155 34 +   6154872 TT-TTTTAATTTTAAAAAGTTACACCTGTCTTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74216869 34 + 122973662 TT-TTTTAATTTAAAAAAGTTACACCTGTCTTTTT
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378348            265989 35 -    375362 CTATTTTTATTTTAAAAAGTTACACCTATCTTTTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      262989 35 -    373274 CTATTTTTATTTTAAAAAGTTACACCTATCTTTTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      194421 35 -    285216 CTATTTTTATTTTTAAAAGTTACACCTATCTTTTT
i aotNan1.NW_018494050v1   C 0 I 424
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995544 95 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1916327 406 -   3067355 I
e manLeu1.NW_012104165v1     2036710 487 +   2316924 I
e chlSab2.chr17             28350314 420 -  71996105 I
e cerAty1.NW_012001495v1     1906373 5277 -   2157725 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I
e macFas5.chr4              29054095 374 - 170955103 I
e rheMac8.chr4              29393196 391 + 172585720 I

a score=4011.000000
s hg38.chr6_GL000254v2_alt    192005 2 +   4827813 CT
s panTro5.chr6              29179478 2 + 175400573 CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413530 2 + 173848474 CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214189 2 +   6154872 CT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74216903 2 + 122973662 CT
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378348            266024 2 -    375362 CT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      263024 2 -    373274 CT
i cebCap1.NW_016108108v1   C 0 I 468
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995544 95 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1916327 406 -   3067355 I
e manLeu1.NW_012104165v1     2036710 487 +   2316924 I
e chlSab2.chr17             28350314 420 -  71996105 I
e cerAty1.NW_012001495v1     1906373 5277 -   2157725 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I
e macFas5.chr4              29054095 374 - 170955103 I
e rheMac8.chr4              29393196 391 + 172585720 I

a score=90380.000000
s hg38.chr6_GL000254v2_alt    192007  81 +   4827813 -------------------------CAATAAATTTTGTAAGAAAAAAGAAAttt-taagagatggggtcttactatgttgcctaggctagtcaagaactcctgggct
s panTro5.chr6              29179480  81 + 175400573 -------------------------CAATAAATTTTGTAAGAAAAAAGAAAttt-taagagatggggtcttactatgttgcctaggctagtcaagaactcctgggct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413532  81 + 173848474 -------------------------CAATAAATTTTGTAAGAAAAAAGAAAttt-taagagatagggtcttactatgttgcctaggctagtcaagaactcctgggct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214191  81 +   6154872 -------------------------CAATAAATTTTGTAAGAAAAAAGAAAttt-taagagatggggtcttactatgttgcctaggctagtcaagaactcctgggct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74216905  71 + 122973662 -------------------------CAATAAATTTTGTAAGAAAA-----------Aagagatggggtcttactatgttgcctaggctagtcaagagctcctgggct
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378348            266026 107 -    375362 TGATTTTTTTAAGGAAAAAATATATCTGTATATCTTGCAAGAAAAAAAATAtttcttagagatggggtctcactatgttgcctaggctggtcaagaactcctgggct
i saiBol1.JH378348         C 0 I 856
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995544  95 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1916327 406 -   3067355 I
e manLeu1.NW_012104165v1     2036710 487 +   2316924 I
e chlSab2.chr17             28350314 420 -  71996105 I
e cerAty1.NW_012001495v1     1906373 5277 -   2157725 I
e macNem1.NW_012011356v1     2042807  93 -   2996164 I
e macFas5.chr4              29054095 374 - 170955103 I
e rheMac8.chr4              29393196 391 + 172585720 I

a score=34114.000000
s hg38.chr6_GL000254v2_alt    192088 37 +   4827813 cacgtgatcgtgaccctcccatctcagccacccaaag
s panTro5.chr6              29179561 37 + 175400573 cacgtgatcgtgaccctcccatctcagccacccaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413613 37 + 173848474 cacgtgatcgtgaccctcccatctcagccacccaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214272 37 +   6154872 cacgtgatcgtgaccctcccatctcagccacccaaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74216976 37 + 122973662 cacatggtcgtgatcctcccatctcagccacccaaag
i nomLeu3.chr1a            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995544 95 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1916327 406 -   3067355 I
e manLeu1.NW_012104165v1     2036710 487 +   2316924 I
e chlSab2.chr17             28350314 420 -  71996105 I
e cerAty1.NW_012001495v1     1906373 5277 -   2157725 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I
e macFas5.chr4              29054095 374 - 170955103 I
e rheMac8.chr4              29393196 391 + 172585720 I

a score=3160.000000
s hg38.chr6_GL000254v2_alt    192125 3 +   4827813 tga
s panTro5.chr6              29179598 3 + 175400573 tga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413650 3 + 173848474 tga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214309 3 +   6154872 tga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74217013 3 + 122973662 tga
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29054469 3 - 170955103 tGT
i macFas5.chr4             I 374 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995544 95 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1916327 406 -   3067355 I
e manLeu1.NW_012104165v1     2036710 487 +   2316924 I
e chlSab2.chr17             28350314 420 -  71996105 I
e cerAty1.NW_012001495v1     1906373 5277 -   2157725 I
e macNem1.NW_012011356v1     2042807 93 -   2996164 I
e rheMac8.chr4              29393196 391 + 172585720 I

a score=162525.000000
s hg38.chr6_GL000254v2_alt    192128 34 +   4827813 ggggattacaggcagaagccaccatgcccagccC
s panTro5.chr6              29179601 34 + 175400573 ggggattacaggcagaagccaccatgcccagccC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413653 34 + 173848474 ggggattacaggcagaagccaccatgcccagccC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214312 34 +   6154872 ggggattacaggcagaagccaccatgcccagccC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74217016 34 + 122973662 ggggattacaggcagaagccaccatgcccaggcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29393587 34 + 172585720 GgggattacaggcatgagctaccatgcccagccC
i rheMac8.chr4             I 391 C 0
s macFas5.chr4              29054472 34 - 170955103 GGTGATTACAGGCATGAGCTACCATGCCCAGCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2042900 34 -   2996164 GgggattacaggcatgagctaccatgcccagccC
i macNem1.NW_012011356v1   I 93 C 0
s chlSab2.chr17             28350734 34 -  71996105 GGGGATTACAGGCATGAGCTACCATGCCCAGCCC
i chlSab2.chr17            I 420 C 0
s manLeu1.NW_012104165v1     2037197 34 +   2316924 GgggattacaggcatgagctaccatgcccagccC
i manLeu1.NW_012104165v1   I 487 C 0
s colAng1.NW_012115566v1     1916733 34 -   3067355 GgggattacaggcatgagctaccatgcccagccC
i colAng1.NW_012115566v1   I 406 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995544 95 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1566143 1396 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e cerAty1.NW_012001495v1     1906373 5277 -   2157725 I

a score=75114.000000
s hg38.chr6_GL000254v2_alt    192162 15 +   4827813 CTCTTCCTTGAGTGT
s panTro5.chr6              29179635 15 + 175400573 CTCTTCCTTGAGTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413687 15 + 173848474 CTCTTCCTTGAGTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214346 15 +   6154872 CTCTTCCTTGAGTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74217050 15 + 122973662 CCCTTCCTTCAGTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29393621 15 + 172585720 CTCTTCCTTAAATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29054506 15 - 170955103 CTCTTCCTTAAATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2042934 15 -   2996164 CTCTTCCTTAAATGT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28350768 15 -  71996105 CTCTTCCTTAAATGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2037231 15 +   2316924 CTCTTCCTTAAATGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1916767 15 -   3067355 CTCTTCCTTGAATGT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1567539 15 -   2232465 CTCCTTCTTGAATAA
i otoGar3.GL873742         I 1396 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995544 95 -   3516910 I
e canFam3.chr35             25923010 717 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e cerAty1.NW_012001495v1     1906373 5277 -   2157725 I

a score=76807.000000
s hg38.chr6_GL000254v2_alt    192177 12 +   4827813 TTACTGTCTTCC
s panTro5.chr6              29179650 12 + 175400573 TTACTGTCTTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413702 12 + 173848474 TTACTGTCTTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214361 12 +   6154872 TTACTGTCTTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74217065 12 + 122973662 TTACTGTCTTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29393636 12 + 172585720 TTACTGACTTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29054521 12 - 170955103 TTACTGACTTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2042949 12 -   2996164 TTACTGACTTCC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28350783 12 -  71996105 TTACTGACTTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2037246 12 +   2316924 TTACTGACTTCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1916782 12 -   3067355 TTACTGACTTCC
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012147953v1      995639 12 -   3516910 TTACTGTTTTCC
i proCoq1.NW_012147953v1   I 95 C 0
s otoGar3.GL873742           1567554 12 -   2232465 TTACTGTTTTCC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25923010 717 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e cerAty1.NW_012001495v1     1906373 5277 -   2157725 I

a score=446287.000000
s hg38.chr6_GL000254v2_alt    192189 69 +   4827813 CTTCATCATCCAGATTTCATGGAAT---------TTTGATTTGCTTAATTTA----------CCTGTTCATGTTAATTTCTATTACTA
s panTro5.chr6              29179662 69 + 175400573 CTTCATCATCCAGATTTCATGGAAT---------TTTGATTTGCTTAATTTA----------CGTGTTCATGTTAATTTCTATTACTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413714 69 + 173848474 CTTCATCATCCAGATTTCATGGAAT---------TTTGATTTGCTTAATTTA----------CGTGTTCATGTTAATTTCTATTACTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214373 69 +   6154872 CTTCATCATCCAGATTTCATGGAAT---------TTTGATTTGCTTAATTTA----------CCTGTTCATGTTAATTTCTATTACTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74217077 69 + 122973662 CTTCATCATCCAGATTTCATGGAAT---------TTTGATTTGCTTAATTTA----------CCCGTTCATGGTAATTTCCATTACCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29393648 69 + 172585720 CTTCATCATCCAGATTTCATGGAAT---------TTTGATTTGCTTAATTTA----------CCTGTTCATGTTAATTTCTATTACTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29054533 69 - 170955103 CTTCATCATCCAGATTTCATGGAAT---------TTTGATTTGCTTAATTTA----------CCTGTTCATGTTAATTTCTATTACTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2042961 69 -   2996164 CTTCATCATCCACATTTCATGGAAT---------TTTGATTTGCTTAATTTA----------CCTGTTCATGTTAATTTCTATTACTA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28350795 69 -  71996105 CTTCATCATCCAGATTTCATGGAAT---------TTTGATTTGCTTAATTTA----------CCTGTTCATGTTAATTTCTAGTACTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2037258 69 +   2316924 CTTCATCATCCAGATTTCATGGAAT---------TTTGATTTACTTAATTTA----------CCTGTTCATGTTAATTTCTATTACTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1916794 69 -   3067355 CTTCATCATCCAGATTTCATGGAAT---------TTTGAGTTGCTTAACTTA----------CCTGTTCATGTTAATTTCTATTACTA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012147953v1      995651 69 -   3516910 CTTCATCTTCTAGATTTTTTGGAAT---------TTTGGTTTGTTCAACTTG----------CCTGTTCATTTAAATTTCTATTACTA
i proCoq1.NW_012147953v1   C 0 I 122
s otoGar3.GL873742           1567566 69 -   2232465 CTTCATCCTCTAGATTTCTTGGAAT---------TTTGGTTTCCTCAAACTT----------CCTATTCATTGAAGTTTCTATTACTA
i otoGar3.GL873742         C 0 I 1
s canFam3.chr35             25923727 88 +  26524999 CCTCATCCTCGGGATTTCACTGAGTGCAGACAGCCTTGCCTTGCTTTATTTTTCAACGTGCCTCTGTTTTCTTTCATTTCCATGATGA
i canFam3.chr35            I 717 I 1
e dasNov3.JH561790             80168 9105 -    302817 I
e saiBol1.JH378348            266133 856 -    375362 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e cerAty1.NW_012001495v1     1906373 5277 -   2157725 I

a score=603166.000000
s hg38.chr6_GL000254v2_alt    192258 113 +   4827813 ATCCTAACCTATATTATTGCACCAGTGTGTCAGTTTACAA--GTATTTTTCAAAG-AATCGGTAACCGTGC----AGC-CTTCCCATTAATTTCTCTAT------TTGTA------CTTTTTCACTGATTCAA
s panTro5.chr6              29179731 113 + 175400573 ATCCTAACCTATATTATTGCACCAGTGTGTCAGTTTACAA--GTATTTTTCAAAG-AATCGGTAACCGTGC----AGC-CTTCCCATTAATTTCTCTAT------TTGTA------CTTTTTCACTGATTCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413783 113 + 173848474 ATCCTAACCTATATTATTGCACCAGTGTGTTAGTTTACAA--GTATTTTTCAAAG-AATCGGTAACCGTGC----AGC-CTTCCCATTAATTTCTCTAT------TAGTA------CTTTTTCACTGATTCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214442 113 +   6154872 ATCCTAACCTATATTATTGCACCAGTGTGTCAGTTTACAA--GTATTTTTCAAAG-AATCGGTAACCGTGC----AGC-CTTCCCATTAATTTCTCTAT------TTGTA------CTTTTTCACTGATTCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74217146 111 + 122973662 ATCCTAACC--TGTTATTGCACCAGTGTGTCAGTTTACAA--GTATTTTTCAAAG-AATCGGTAACCGTGC----AGC-CTTCTCATTAATTTCTCTAT------TTCTA------CTTTTTCACTGATTCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29393717 113 + 172585720 ATCCTAACCTATATTATTGCACCAGTGTGTCAGTTTACAA--GTATTTTTCAAAG-AATCGGTAACTGTGC----AGC-CTTCCCATTAGTTTCTCTAT------TTGTA------CTTTTTAACTGATTTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29054602 113 - 170955103 ATCCTAACCTATATTATTGCACCAGTGTGTCAGTTTACAA--GTATTTTTCAAAG-AATCGGTAACTGTGC----AGC-CTTCCCATTAGTTTCTCTAT------TTGTA------CTTTTTAACTGATTTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2043030 113 -   2996164 ATCCTAACCTATATTATTGCACCAGTGTGTCAGTTTACAA--GTATTTTTCAAAG-AATCGGTAACTGTGC----AGC-CTTCCCATTAGTTTCTCTAT------TTGTA------CTTTTTAACTGATTTCA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28350864 113 -  71996105 ATCCTAACCTATATTATTGCACCAGTGTGTCAGTTTACAA--GTATTTTTCAAAG-AATCGGTAACTGTGC----AGC-CTTCCCATTAGTTTCTCTAT------TTGTA------CTTTTTAACTGATTTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2037327 113 +   2316924 ATCCTAACCTATATTATTGCACCAGTGTGTCAGTTTACAA--GTATTTTTCAAAG-AATCGGTAACTGTGC----AGC-CTTCCCATTAGTTCCTCTAT------TTGTA------CTTTTTAACTGATTTCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1916863 113 -   3067355 ATCCTAACCTATATTATTGCACCAGTGTGTCAGTTTACAA--GTATTTTTCAAAG-AATCAGTAATTGTGC----AGC-CTTCCCATTAGTTTCTCTAT------TTGTA------CTTTTTAACTGATTTCA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1567636 121 -   2232465 CTGCTGAACTAAATAATTATAACAATGTATCAGTTTGCAA--ATGTTTTTGAAAGAAATTAGTAACCAGGC----AACAATTCCCATTAGTTTCCCTAT------CTCTAGTCATTCTTTTTCTCTGTTTGAT
i otoGar3.GL873742         I 1 I 4
s canFam3.chr35             25923816 123 +  26524999 ACCTTGGCCGAAATCATTTCAACATTG--TCAGCTTGCAGTTGTTTTTTTAGATG-AGTTAGTAGCCGGGTGACAAGC-ATTTCCACGAATTTCCCAATGGCAAGTCTTT------CTCTCTAACGTCCTTAG
i canFam3.chr35            I 1 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995720 122 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e cerAty1.NW_012001495v1     1906373 5277 -   2157725 I

a score=252531.000000
s hg38.chr6_GL000254v2_alt    192371 36 +   4827813 ATACCACCT-CAAGGAATAGAATCATCCTTAAAAATT-
s panTro5.chr6              29179844 36 + 175400573 ATACCACCT-CAAGGAATAGAATCATCCTTAAAAATT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413896 36 + 173848474 ATACCACCT-CAAGGAATAGAATCATCCTTAAAAATT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214555 36 +   6154872 ATACCACCT-CAAGGAATAGAATCATCCTTAAAAATT-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74217257 36 + 122973662 ATACCACCT-CAAGGAATAGAATCATCCTTAAAAATT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29393830 36 + 172585720 ATACTACCT-CAAGGAATAGAATCATCCTTAAAAATT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29054715 36 - 170955103 ATACTACCT-CAAGGAATAGAATCATCCTTAAAAATT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2043143 36 -   2996164 ATACTACCT-CAAGGAATAGAATCATCCTTAAAAATT-
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28350977 36 -  71996105 ATACCACCT-CAAGGAATAGAATCATCCTGAAAAGTT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2037440 36 +   2316924 ATACCACCT-CAAGGAATAGAATCATCCTTAAAAATT-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1916976 36 -   3067355 ATACCACCT-CAAGGAATAGAATCATCCTTAAAAATT-
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012147953v1      995842 36 -   3516910 ATATCACCT-CAAGGGAGAGAATCATCCTTAAAAATT-
i proCoq1.NW_012147953v1   I 122 I 308
s otoGar3.GL873742           1567761 36 -   2232465 ATAACACCT-CAAGAGAGAGAATCATCCTTAAAAATT-
i otoGar3.GL873742         I 4 I 1
s canFam3.chr35             25923939 38 +  26524999 AGAACACCTCCAAAGGTGAGCATCATCCTTAGAAAACT
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e saiBol1.JH378348            266133 856 -    375362 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e cerAty1.NW_012001495v1     1906373 5277 -   2157725 I

a score=98237.000000
s hg38.chr6_GL000254v2_alt    192407 20 +   4827813 CTTAAAGAAGAAAATGCTTT--
s panTro5.chr6              29179880 20 + 175400573 CTTAAAGAAGAAAATGCTTT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413932 20 + 173848474 CTTAAAGAAGAAAATGCTTT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214591 20 +   6154872 CTTAAAGAAGAAAATGCTTT--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74217293 20 + 122973662 CTTAAAGAAGAAAATGCTTT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29393866 20 + 172585720 CTTAAAGAAGAAAATGCTTT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29054751 20 - 170955103 CTTAAAGAAGAAAATGCTTT--
i macFas5.chr4             C 0 I 306
s macNem1.NW_012011356v1     2043179 20 -   2996164 CTTAAAGAAGAAAATGGTTT--
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28351013 20 -  71996105 CTTAAAGAAGAAAATGCTTT--
i chlSab2.chr17            C 0 I 304
s manLeu1.NW_012104165v1     2037476 20 +   2316924 CTTAAAGAAGAAAATGCTTT--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1917012 20 -   3067355 CTTAAAGAAGAAAATGCTTT--
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1567798 13 -   2232465 CCT-------GAAATGCTTC--
i otoGar3.GL873742         I 1 I 3
s canFam3.chr35             25923977 14 +  26524999 --------CTGAAATGCTCCTT
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995878 308 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e cerAty1.NW_012001495v1     1906373 5277 -   2157725 I

a score=93539.000000
s hg38.chr6_GL000254v2_alt    192427 13 +   4827813 TCATTCTGTCGCT
s panTro5.chr6              29179900 13 + 175400573 TCATTCTGTCGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413952 13 + 173848474 TCATTCTGTCGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214611 13 +   6154872 TCATTCTGTCGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74217313 13 + 122973662 TCATTCTGTCGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29393886 13 + 172585720 TCATTCTGTCACt
i rheMac8.chr4             C 0 I 306
s macFas5.chr4              29055077 13 - 170955103 TCATTCTGTCACT
i macFas5.chr4             I 306 C 0
s macNem1.NW_012011356v1     2043199 13 -   2996164 TCATTCTGTCACt
i macNem1.NW_012011356v1   C 0 I 306
s cerAty1.NW_012001495v1     1911650 13 -   2157725 TCATTCTGTCACT
i cerAty1.NW_012001495v1   I 5277 C 0
s chlSab2.chr17             28351337 13 -  71996105 TCATTCTGTCACT
i chlSab2.chr17            I 304 C 0
s manLeu1.NW_012104165v1     2037496 13 +   2316924 TCATTCTGTCACt
i manLeu1.NW_012104165v1   C 0 I 302
s colAng1.NW_012115566v1     1917032 13 -   3067355 TCATTCTGTCACT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1567814 13 -   2232465 TTTTCTTGTCACT
i otoGar3.GL873742         I 3 C 0
s canFam3.chr35             25923991 13 +  26524999 TCATTCTCTCCCT
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995878 308 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I

a score=170971.000000
s hg38.chr6_GL000254v2_alt    192440 38 +   4827813 TCTTACTCAGACATCTTCAAAgttttgtggg--ttttttg
s panTro5.chr6              29179913 38 + 175400573 TCTTACTCAGACATCTTCAAAgttttgtggg--ttttttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29413965 38 + 173848474 TCTTACTCAGACATCTTCAAAgttttgtggg--ttttttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214624 38 +   6154872 TCTTACTCAGACATCTTCAAAgttttgtggg--ttttttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74217326 37 + 122973662 TCTTACTCAGACATCTTCAAAGTtttgtggg--gttttt-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29394205 38 + 172585720 TCTTACTCAGACATCTTCAAAATTTCATGGG--Ttttttg
i rheMac8.chr4             I 306 C 0
s macFas5.chr4              29055090 38 - 170955103 TCTTACTCAGACATCTTCAAAATTTCATGGG--Ttttttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2043518 38 -   2996164 TCTTACTCAGACATCTTCAAAATTTCATGGG--Ttttttg
i macNem1.NW_012011356v1   I 306 C 0
s cerAty1.NW_012001495v1     1911663 39 -   2157725 TCTTACTCAGACATCTTCAAAATTTCGTGGg-tttttttg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28351350 39 -  71996105 TCTTACTCAGACATCTTCAGAATTTCGTGGgtttctttt-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2037811 40 +   2316924 TCTTACTCAGACATCTTCAAAATTTCGTGGtttttttttg
i manLeu1.NW_012104165v1   I 302 C 0
s colAng1.NW_012115566v1     1917045 12 -   3067355 -------------TTTTT---------------TTTTTTG
i colAng1.NW_012115566v1   C 0 I 20
s otoGar3.GL873742           1567827 33 -   2232465 TCTCACTCAGAAAGATTCAAAGTTGT-------TTTTTTG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25924004 28 +  26524999 TCTCACTCACAAATCTTCAAAGCTTCCT------------
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995878 308 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I

a score=163698.000000
s hg38.chr6_GL000254v2_alt    192478 36 +   4827813 ttgttgttgtttatttgtttgtgttTGCCTCTGGGA
s panTro5.chr6              29179951 36 + 175400573 ttgttgttgtttatttgtttgtgttTGCCTCTGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29414003 36 + 173848474 ttgttgttgtttatttgtttgtgttTGCCTCTGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214662 36 +   6154872 ttgttgttgtttatttgtttgtttttgCCTCTGGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74217363 36 + 122973662 tggttgttgtttatttgttggtttTTGCCTCTGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29394243 36 + 172585720 ttgttgttgttgatttgtttgtttttgtCTCTGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29055128 36 - 170955103 ttgttgttgttgatttgtttgtttttgtCTCTGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2043556 36 -   2996164 ttgttgttgttgatttgtttgtttttgtCTCTGGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1911702 36 -   2157725 ttgttgttgtttatttgtttgtttttgtCTCTGGGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28351389 36 -  71996105 ttgttgttgtttatttgtttgtttttGTCTCTGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2037851 36 +   2316924 ttgttgttgtttatttgtttgtttttGTCTCTGGGA
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1567860 23 -   2232465 -------------CAGGGGGGCTGGCAGCTCTGGGA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25924032 15 +  26524999 ---------------------TTTCTGCCTCCACGA
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995878 308 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1917057 20 -   3067355 I

a score=231086.000000
s hg38.chr6_GL000254v2_alt    192514 35 +   4827813 CATTGTCCAAATTCTTTAGTATAAAGGCCTAATAA
s panTro5.chr6              29179987 35 + 175400573 CATTGTCCAAATTCTTTAGTATAAAGGCCTAATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29414039 35 + 173848474 CATTGTCCAAATTCTTTAGTATAAAGGCCTAATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214698 35 +   6154872 CATTGTCCAAATTCTTTAGTATAAAGGCCTAATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74217399 35 + 122973662 CATTGTCCAAATTCTTTAGTATAAAGGCCTAATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29394279 35 + 172585720 CATGGTCCAAATTCTTTAGTATAAAGGCCTAATCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29055164 35 - 170955103 CATGGTCCAAATTCTTTAGTATAAAGGCCTAATCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2043592 35 -   2996164 CATGGTCCAAATTCTTTAGTATAAAGGCCTAATCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1911738 35 -   2157725 CATGGTCCAAATTCTTTACTATAAAGGCCTAATCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28351425 35 -  71996105 CATTGTCCAAATTCTTTAGTATAAAGGCCTAATCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2037887 35 +   2316924 CATGGTCCAAATTCTTTAGTATAAAGGCCTAATCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1917077 35 -   3067355 CCCAGCCCAAATTCTTTAGTATAAAGGCCTAATCA
i colAng1.NW_012115566v1   I 20 C 0
s otoGar3.GL873742           1567883 35 -   2232465 CATTATGCAAGCTTTTCAGCATAAAGGCTTAATGA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25924047 35 +  26524999 CATTGTCCAAACCCTTGAGCTTGGGGCTCTGGTGA
i canFam3.chr35            C 0 I 3404
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995878 308 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I

a score=21294.000000
s hg38.chr6_GL000254v2_alt    192549 3 +   4827813 AAT
s panTro5.chr6              29180022 3 + 175400573 AAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29414074 3 + 173848474 AAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214733 3 +   6154872 AAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74217434 3 + 122973662 AAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29394314 3 + 172585720 AAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29055199 3 - 170955103 AAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2043627 3 -   2996164 AAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1911773 3 -   2157725 AAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28351460 3 -  71996105 AAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2037922 3 +   2316924 AAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1917112 3 -   3067355 AAT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1567918 3 -   2232465 AAT
i otoGar3.GL873742         C 0 I 1567
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995878 308 -   3516910 I
e canFam3.chr35             25924082 3404 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I

a score=573801.000000
s hg38.chr6_GL000254v2_alt    192552 108 +   4827813 TCTTATTAATAggcccggtagctcacgcctgtaatcctagcacttccggaggctgaggtgggcggat--cccgaggtcaggagatcatgaccagcctggccaacacagtg
s panTro5.chr6              29180025 108 + 175400573 TCTTATTAATAggcccggtagctcacgcctgtaatcccagcacttctggaggctgaggtgggcggat--cccgaggtcaggagatcatgaccagcctggccaacacagtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29414077 108 + 173848474 TCTTATTAATAggcccggtagctcacgcctgtaatcccagcacttctggaggctgaggtgggcggat--cccgaggtcaggagatcatgaccagcctggccaacacagtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214736 108 +   6154872 TCTTATTAATAggcccggtagctcacgcctgtaatcccagcacttccggaggctgaggtgggcggat--cccgaggtcaggagatcatgaccagcctggccaacacagtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74217437 108 + 122973662 TTTTATTAATAggcccggtagctcaggcctgtaatcccagcacttccggaggctgaggtgggcggat--cccgaggtcaggagatcatgaccagcgtggccaacacagtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29394317 108 + 172585720 TCTTATTAATAggtgcagtaactcatgcctgtaatcccagcactttgggaggctgaggtgggcggat--cctgaggtcaggagatgaagaccagcctggccaacacagtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29055202 108 - 170955103 TCTTATTAATAggtgcagtaactcacgcctgtaatcccagcactttgggaggctgaggtgggcggat--cctgaggtcaggagatgaagaccagcctggccaacacagtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2043630 108 -   2996164 TCTTATTAATAggtgcagtaactcacgcctgtaatcccagcactttgggaggctgaggtgggcggat--cctgaggtcaggagatgaagaccagcctgggcaacacagtg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1911776 108 -   2157725 TCTTATTAATAggtgcggtaactcacgcctgtaatcccagcactttgggaggctgaggtgggcggat--cctgaggtcaggagatgaagaccaacctggccaacacagtg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28351463 109 -  71996105 TCTTATTAATAggtgcggtaactcacacctgtaaacccagcactctgggaggctgaggcgggcggatcacctgaggtcaggagttggagactagcctggccaacatgg-g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2037925 108 +   2316924 TCTTATTAATAggtgcggtaactcacgtttgtaatcccagcactttgggaggctgaggtgggcggat--cctgaggtcaggagatgaagaccaacctggccaacacagtg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1917115 107 -   3067355 TCTTATTAATAggtgccgtaactcacgcctat-ttcccagcactttgggaggctgaggtgggcggat--cctgaggtcaggagatgaagactggcctggccaatacagtg
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995878 308 -   3516910 I
e canFam3.chr35             25924082 3404 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I

a score=836080.000000
s hg38.chr6_GL000254v2_alt    192660 184 +   4827813 aaaccccgtctctact-aaaaatacaaaaattagccgggcatggtggcgcacacctgtagtcccagctactcaggaggctgaggcaggagaatcgcttgaacctgggaggcggagcttgcggtgagccgagatcgcgccactgcactccagcctgggcgac-agagcgagactctgtctcaaaaaa
s panTro5.chr6              29180133 184 + 175400573 aaaccccgtctctact-aaaaatacaaaaattagctgggcatggtggcgcacacctgtagtcccagctactcaggaggctaaggcaggagaatcgcttgaacctgggaggcggaagttgcggtgagccgagatcgcgccactgcactccagcctgggcgac-agagcgagactccgtctcaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29414185 184 + 173848474 aaaccccgtctctact-aaaaatacaaaaattagccgggcatggtggcgcacacctgtagtcccagctactcaggaggctaaggcaggagaatcgcttgaacctgggaggcggaagttgcggtgagccgagatcgcgccactgcactccagcctgggcgac-agagcgagactctgtctcaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5214844 184 +   6154872 aaaccccgtctctact-aaaaatacaaaaattagccgggcatggtggcgcacacctgtagtcccagctactcaggaggctaacgcaggagaatcgcttgaacctgggaggcggaggttgcggtgagccgagatcgcgccactgcactccagcctgggcgac-agagcgagactccgtctcaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29394425 184 + 172585720 aaaccccatctctact-aaaaatacaaaaattagccgggcatggtggcgcacacctgtagtcccagctactcaggaggttgaggcaggagaatcgcttgaacctgggaggcgaaggttgtggtaagccgagatagcaccactgcactccagcttgggcaac-agagcgagactctgtctcaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29055310 184 - 170955103 aaaccccatctctact-aaaaatacaaaaattagccgggcatggtggcgcacacctgtagtcccagctactcaggaggttgaggcaggagaatcgcttgaacctgggaggcgaaggttgtggtaagccgagatagcaccactgcactccagcttgggcaac-agagcgagactctgtctcaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2043738 184 -   2996164 aaaccccatctctact-aaaaatacaaaaattagccgggcatggtggcgcacacctgtagtcccagctactcaggaggttgaggcaggagaatcgcttgaacctgggaggctaaggttgtggtaagccgagatagcaccactgcactccagcttgggcaac-agagcgagactctgtctcaaaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1911884 184 -   2157725 aaaccccatctctact-aaaaatacaaaaattagccggacatggtggtgcacacctgtagtcccagctactcagggggttgaggcgggagaatcgcttgaacctgggaggcgaaggttgtggtaagccgagatagcaccactgcactccagcttgggcaac-agaacgagactctgtctcaaaaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28351572 186 -  71996105 aagccctgtccctactaaaaaatacaaaaattattcacccgtggtgttgtgtgcctgtaacctcagctcttccggaggctgacgcagaagaatcgcttgaacctgggaggcggaggttgcagagagccgagatttcgcttttgcactccagcctgagtgacaagagtgaaactctgtctcaaaaaa
i chlSab2.chr17            C 0 I 607
s manLeu1.NW_012104165v1     2038033 184 +   2316924 aaaccccatctctact-aaaaatacaaaaattagccggacatggtggtgcacacctgtagtcccagctactcagggggttgaggcgggagaatcgcttgaacctgggaggcgaaggttgtggtaagccgagatagcaccactgcactccagcttgggcaac-agaacgagactctgtctcaaaaaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1917222 182 -   3067355 aaaccccatctctact-aaaaatacaaaaattagccgggcatgatggcgcacacctgtagtcccagctactcaggaggttgaggcaggagaatctcttgaacctgggaggcgaaggttgtggtaagccgagatagcaccactgcactccagcttgggcaac-agagtgaga--ctgtctcaaaaaa
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995878 308 -   3516910 I
e canFam3.chr35             25924082 3404 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e nomLeu3.chr1a             74217545   0 + 122973662 C

a score=6247.000000
s hg38.chr6_GL000254v2_alt    192844 2 +   4827813 aa
s panTro5.chr6              29180317 2 + 175400573 aG
i panTro5.chr6             C 0 I 6
s panPan2.chr6              29414369 2 + 173848474 aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5215028 2 +   6154872 aG
i gorGor5.CYUI01015250v1   C 0 I 21
s rheMac8.chr4              29394609 2 + 172585720 aa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29055494 2 - 170955103 aa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2043922 2 -   2996164 aa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1912068 2 -   2157725 aa
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2038217 2 +   2316924 aa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1917404 2 -   3067355 aa
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995878 308 -   3516910 I
e canFam3.chr35             25924082 3404 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e chlSab2.chr17             28351758 607 -  71996105 I
e nomLeu3.chr1a             74217545 0 + 122973662 C

a score=13318.000000
s hg38.chr6_GL000254v2_alt    192846 6 +   4827813 aaaaaa
s panTro5.chr6              29180325 6 + 175400573 AATAAA
i panTro5.chr6             I 6 C 0
s panPan2.chr6              29414371 1 + 173848474 -----a
i panPan2.chr6             C 0 C 0
s rheMac8.chr4              29394611 6 + 172585720 aaaaaa
i rheMac8.chr4             C 0 I 17
s macFas5.chr4              29055496 6 - 170955103 aaaaaa
i macFas5.chr4             C 0 I 17
s macNem1.NW_012011356v1     2043924 6 -   2996164 aaaaaa
i macNem1.NW_012011356v1   C 0 I 11
s cerAty1.NW_012001495v1     1912070 6 -   2157725 aaaaaa
i cerAty1.NW_012001495v1   C 0 I 10
s manLeu1.NW_012104165v1     2038219 6 +   2316924 aaaaaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1917406 6 -   3067355 aaaaaa
i colAng1.NW_012115566v1   C 0 I 10
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995878 308 -   3516910 I
e canFam3.chr35             25924082 3404 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e chlSab2.chr17             28351758 607 -  71996105 I
e nomLeu3.chr1a             74217545 0 + 122973662 C
e gorGor5.CYUI01015250v1     5215030 21 +   6154872 I

a score=207.000000
s hg38.chr6_GL000254v2_alt    192852 1 +   4827813 G
s panTro5.chr6              29180331 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29414372 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s manLeu1.NW_012104165v1     2038225 1 +   2316924 G
i manLeu1.NW_012104165v1   C 0 I 8
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995878 308 -   3516910 I
e canFam3.chr35             25924082 3404 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1917412 10 -   3067355 I
e chlSab2.chr17             28351758 607 -  71996105 I
e cerAty1.NW_012001495v1     1912076 10 -   2157725 I
e macNem1.NW_012011356v1     2043930 11 -   2996164 I
e macFas5.chr4              29055502 17 - 170955103 I
e rheMac8.chr4              29394617 17 + 172585720 I
e nomLeu3.chr1a             74217545 0 + 122973662 C
e gorGor5.CYUI01015250v1     5215030 21 +   6154872 I

a score=204.000000
s hg38.chr6_GL000254v2_alt    192853 16 +   4827813 TATATTTTATTAATAC-
s panTro5.chr6              29180332  7 + 175400573 TATACtt----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29414373 16 + 173848474 TATATTT-ATTAATACT
i panPan2.chr6             C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995878 308 -   3516910 I
e canFam3.chr35             25924082 3404 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1917412 10 -   3067355 I
e manLeu1.NW_012104165v1     2038226  8 +   2316924 I
e chlSab2.chr17             28351758 607 -  71996105 I
e cerAty1.NW_012001495v1     1912076 10 -   2157725 I
e macNem1.NW_012011356v1     2043930 11 -   2996164 I
e macFas5.chr4              29055502 17 - 170955103 I
e rheMac8.chr4              29394617 17 + 172585720 I
e nomLeu3.chr1a             74217545  0 + 122973662 C
e gorGor5.CYUI01015250v1     5215030 21 +   6154872 I

a score=161268.000000
s hg38.chr6_GL000254v2_alt    192869 293 +   4827813 TCtttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcaccgcaacctccgcctcccaggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcacccgccaccatgcccggctaattttttgta-ttttttttagtagagacagggtttcaccgtgttagccaggatggtctcaattccctgacatcgtgatccgccctcctcgggctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc
s panTro5.chr6              29180339 294 + 175400573 tttttgtttgagacagagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcaccgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcacatgccaccatgcccggctaattttttgtatttttttttagtagagacagggtttcaccgtgttagccaggatggtctcaattccctgacctcgtgatccgccctcctcgggctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29414389 294 + 173848474 Cttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggtgcgatctcggctcaccgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcacccgccaccatgcccggctaattttttgtatttttttttagtagagacagggtttcaccgtgttagccaggatggtctcaattccctgacctcgtgatccgccctcctcgggctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5215051 292 +   6154872 tttttttttgagacagagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcaccgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcacccgccaccatgcccggctaattttttgta--tttttttagtagagacagggtttcaccgtgttagccaggatggtctcaattccctgacctcgtgatccgcccgcctcgggctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc
i gorGor5.CYUI01015250v1   I 21 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995878 308 -   3516910 I
e canFam3.chr35             25924082 3404 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1917412  10 -   3067355 I
e manLeu1.NW_012104165v1     2038226   8 +   2316924 I
e chlSab2.chr17             28351758 607 -  71996105 I
e cerAty1.NW_012001495v1     1912076  10 -   2157725 I
e macNem1.NW_012011356v1     2043930  11 -   2996164 I
e macFas5.chr4              29055502  17 - 170955103 I
e rheMac8.chr4              29394617  17 + 172585720 I
e nomLeu3.chr1a             74217545   0 + 122973662 C

a score=200991.000000
s hg38.chr6_GL000254v2_alt    193162 55 +   4827813 TAAAATATACTGTTTTAGggacaggcacagtggctcacgcctataaacc---cactct
s panTro5.chr6              29180633 55 + 175400573 TAAAATATACTGTTTTAGggacaggcacagtggctcacgcctataaacc---cactct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29414683 55 + 173848474 TAAAATATACTGTTTTAGggacaggcacagtggctcacgcctataaacc---cactct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5215343 55 +   6154872 TAAAATATACTGTTTTAGggacaggcacagtggctcacgcgtataaacc---cactct
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29394634 58 + 172585720 TAAAATATACTGTTTTAAggccaggcacagtggctaacacctgtaaacccagcactct
i rheMac8.chr4             I 17 C 0
s macFas5.chr4              29055519 58 - 170955103 TAAAATATACTGTTTTAAggccaggcacagtggctaacacctgtaaacccagcactct
i macFas5.chr4             I 17 C 0
s macNem1.NW_012011356v1     2043941 58 -   2996164 TAAAATATACTGTTTTAAggccaggcacagtggctaacacctgtaaacccagcactct
i macNem1.NW_012011356v1   I 11 C 0
s cerAty1.NW_012001495v1     1912086 58 -   2157725 TAAAATATACTGTTTTAAggccaggcacagtgcctcacacctgtaaacccagcactct
i cerAty1.NW_012001495v1   I 10 C 0
s manLeu1.NW_012104165v1     2038234 58 +   2316924 TAAAATATACTGTTTTAAggccaggcacagtgcctcacacctgtaaacccagcactct
i manLeu1.NW_012104165v1   I 8 C 0
s colAng1.NW_012115566v1     1917422 58 -   3067355 TAAAATACACTGTTTTAAggccaggcacaatggctcacacctgtaaacccagcactct
i colAng1.NW_012115566v1   I 10 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995878 308 -   3516910 I
e canFam3.chr35             25924082 3404 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e chlSab2.chr17             28351758 607 -  71996105 I
e nomLeu3.chr1a             74217545  0 + 122973662 C

a score=286595.000000
s hg38.chr6_GL000254v2_alt    193217 62 +   4827813 gggaggctgaggcgggcggatgacctgaggtcaggagtttgagactagcctggccaacatgg
s panTro5.chr6              29180688 62 + 175400573 gggaggctgaggcgggcggattacctgaggtcaggagtttgagactagcctgtccaacatgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29414738 62 + 173848474 gggaggctgaggcgggcggattacctgaggtcaggagtttgagactagcctgtccaacatgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5215398 62 +   6154872 gggaggctgaggcgggcggatcacctgaggtcaggagtttgagactagcctggccaacatgg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29394692 62 + 172585720 gggaggctgaggcgggcagatcacctgaggtcaggagttggagactagcctggccaacatag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29055577 62 - 170955103 gggaggctgaggcgggcagatcacctgaggtcaggagttggagactagcctggccaacatag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2043999 62 -   2996164 gggaggctgaggcgggcggatcacctgaggtcaggagttggagactagcctggccaacatag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1912144 62 -   2157725 gggaggctgaggcgggtggatcacctgaggtcaggagttggagactagcctggccaacatgg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28352365 60 -  71996105 gggaggccgagacgggcggatcac--gaggtcaggagatcgagaccatcctggctaacacgg
i chlSab2.chr17            I 607 I 1
s manLeu1.NW_012104165v1     2038292 62 +   2316924 gggaggctgaggcaggtggatcacctgaggtcaggagttggagactagcctggccaacatgg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1917480 62 -   3067355 gggaggctgaggtgggcggattacctgaggtcaggagttggagactagcctggccaacatgg
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995878 308 -   3516910 I
e canFam3.chr35             25924082 3404 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e nomLeu3.chr1a             74217545  0 + 122973662 C

a score=1749812.000000
s hg38.chr6_GL000254v2_alt    193279 335 +   4827813 gaagccccgtccctactaaaaatac-aaaaattatccacgcatggtgtcgcatgcctataacctcagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagccaagattgcgctattgcactccagcctgggcgacaggagcgagactctgtctcaaaaaataaataaaataaaaTATACCGTTTTAAAATGAATTTCCTCCTGCCTCCTCTAAACCTCCctgccctaagggaacgagtgacttttactagtattggccaaatccaagggacacttttcagtcttcatcttaacatctcgaaggcatttt
s panTro5.chr6              29180750 335 + 175400573 gaagccccgtccctactaaaaatac-aaaaattatccacccatggtgtcgcatgcctataacctcagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagccaagattgcgctattgcactccagcctgggcgacaggagcgagactctgtctcaaaaaataaataaaataaaaTATACCGTTTTAAAATGAATTTCCTCCTGCCTCCTCTAAACCTCCctgccctaagggaacgagtgacttttactagtattggccaaatccaagggacacttttcagtcttcatcttaacatctcgaaggcatttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29414800 335 + 173848474 gaagccccgtccctactaaaaatac-aaaaattatccacgcatggtgtcgcatgcctataacctcagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagccaagattgcgctattgcactccagcctgggcgacaggagcgagactctgtctcaaaaaataaataaaataaaaTATACCGTTTTAAAATGAATTTCCTCCTGCCTCCTCTAAACCCCCctgccctaagggaacgagtgacttttactagtattggccaaatccaagggacacttttcagtcttcatcttaacatctcgaaggcatttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5215460 335 +   6154872 gaagccccgtccctactaaaaatac-aaaaattatccacgcatggtgtcgcatgcctataacctcagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgggccaagattgcgctattgcactccagcctgggcgacaggagcgagactctgtctcaaaaaataaataaaataaaaTATACCGTTTTAAAATGAATTTCCTCCTGCCTCCTCTAAACCTCCctgccctaagggaacgagtgacttttactagtattggccaaatccaagggacacttttcagtcttcatcttaacatctcgaaggcatttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74217545 336 + 122973662 aaaaccccgtctctactaaaaatacaaaaaattatccacgcatggtgtcgcatgcctataacctcagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgagccaagatcgcgctattgcactccagcctgggcgacaggagtgagactctgtctcagaaaataaataaaataaaaTATACCATTTTAAAATGAATTCCCTCCTGCCTCCTCTAAACCTCCCTGCCCTAGGGGAacgagtgacttttactagtattggccaaatccaagggacacttttcagtcttcatcttaacatctccaaggcatttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29394754 324 + 172585720 gaagccctgtccctactaaaaatac-aaaaattatccacacgtggtgttttgtgcctgtaacctcagctgttcgggaggctga-----------tgcttgaacctgggaggcggaggttgcagagagccgagactgcgcttttgcactccagtctgagcgacaagagtgagactctgtctcaaaaaataaatcaaataaaaTATAGCGTTTTAAAATGAATTCCTTCCTGCCCACTCTAAACCTCCctgccctaagggaacgagtgacttttactagtattggccaaatccaagggacacttttcggtgttcatcttaacatctcgaagacatttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29055639 324 - 170955103 gaagtcctgtccctactaaaaatac-aaaaattatccacacgtggtgttttgtgcctgtaacctcagctgttcgggaggctga-----------tgcttgaacctgggaggcggaggttgcagagagccgagactgtgcttttgcactccagtctgagtgacaagagtgagactctgtctcaaaaaataaatcaaataaaaTATAGCGTTTTAAAATGAATTCCTTCCTGCCCACTCTAAACCTCCctgccctaagggaacgagtgacttttactagtattggccaaatccaagggacacttttcagtgttcatcttaacatctcgaagacatttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2044061 324 -   2996164 gaagccctgtccctactaaaaatac-aaaaattatccacacgtggtgttttgtgcctgtaacctcagctgttcgggaggctga-----------tgcttgaacctgggaggcggaggttgcagagagccgagactgcgcttttgcactccagtctgagcgacaagagtgagactctgtctcaaaaaataaatcaaataaaaTATAGCGTTTTAAAATGAATTCCTTCCTGCCCACTCTAAACCTCCctgccctaagggaacgagtgacttttactagtattggccaaatccaagggacacttttcagtattcatcttaACATCTCGAAGACAtttt
i macNem1.NW_012011356v1   C 0 I 564
s cerAty1.NW_012001495v1     1912206 335 -   2157725 gaagccctgtccctactaaaaatac-aaaaattatccccgggtggtgttgtgtgcctgtaacctcagctgttcgggaggctgaggcagaagaatggcttgaacccgggaggcggaggttgcagagagccgagattgcgcttttgcactccagcctgagcgacaagagtgagactctgtctcaaaaaataaatcaaataaaaTATAGCGTTTTAAAATGAATTCCTTCCTGCCCACTCTAAACCTCCctgccctaagggaacgagtaacttttactagtattggccaaatccaagggacacttttcagtgttcatcttaacatctcgaaggcatttt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28352426 311 -  71996105 gaaaccccgtctctactaaaaatacaaaaaactagccgggcgaggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagctgagatccagccactgcactccaggccgggctac-agagcaagactccgtctcaaaaaa------------------------aaaaaTTAATTCCTTCCTGCCCGCTCTAAACCTCCCTGCCCTGAGGGAACGAGTGACTTTTACTAGTATTGGCCAAATCCAAGGGACACTTTTCAGTGTTCATCTTAACATCTGGAAGGCATTTT
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012104165v1     2038354 335 +   2316924 gaagccctgtccgtactaaaaatac-aaaaattatccccgggtggtgttgtgtgcctgtaacctcagctgttcgggaggctgaggcagaagaatggcttgaacccgggaggcggaggttgcagagagcggagattgcgcttttgcactccagcctgagcgacaagagtgagactctgtctcaaaaaataaatcaaataaaaTATAGCGTTTTAAAATGAATTCCTTCCTGCCCACTCTAAACCTCCctgccctaagggaacgagtaacttttactagtattggccaaatccaagggacacttttcagtgttcatcttaacatcttgaaggcatttt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1917542 335 -   3067355 gaagccctgtccctgctaaaaatac-aaaaattatccatgcgtggtgtcatgtgcctgtaacctcagctgttcgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagagagccaagattgcgcttttgcactccagcctgagcgacaagagtgagactctgtctcaaaaaataaatcaaataaaaTATAGTGTTTTAAAATGAATTCCTTCCTGCCCACTTTAAACCTCCctgccctaagggaacgagtgacttttactagtgttggccaaatccgagggacacttttcagtgttcatcttaacatctcgaaggcatttt
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995878 308 -   3516910 I
e canFam3.chr35             25924082 3404 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I

a score=2045631.000000
s hg38.chr6_GL000254v2_alt    193614 426 +   4827813 atgtggagtcctaatcagggaaaaggagtcaggctggtgggaccaggggaaagcaaagataaagcaaacaagtgataggtctgctttttttatggcccagggcacatggccctcc------------tgtacataactcacaaacttcctgcttaccatcaaacgcctcgatttatcaagcaccttggctgacagaagaatgcgggttaagcttcctgctaccttagcgttatcaatcagtccaagttccattgtataaaatccctagcaagtctttgtttctttgtagtcagcttctcttctgttgatactgcctgttgtctccctggcaacatatttttctactttctctaataaatctgcctttctttacctacaatggtcttggtaaatcttttccccctacaccacaggcccagttagtcgtcacttacctgt
s panTro5.chr6              29181085 426 + 175400573 atgtggagtcctaatcagggaaaaggagtcaggctggtgggaccaggggaaagcagagataaagccaacaagtgataggtctgctttttttatggcccagggcacatggccctcc------------tgtacataactcacaaacttcctgcttaccatcaaacgcctcgatttatcaagcaccttggctgacagaagaatgcgggttaagcttcctgctaccttagcgttatcaatcagtccaagttccattgtataaaatccctagcaagtctttgtttctttgtagtcagcttctcttctgttgatactgcctgctgtctccctggcaacatatttttctactttctctaataaatctgcctttgtttacctacaactgtcttggtaaatcttttccccctacaccacaggcccagttagtcgtcacttacctgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29415135 426 + 173848474 atgtggagtcctaatcagggaaaaggagtcaggctggtgggaccaggggaaagcagagataaagccaacaagtgataggtctgctttttttatggcccagggcacatggccctcc------------tgtacataactcacaaacttcctgcttaccatcaaacgcctcgatttatcaagcaccttggctgacagaagaatgcgggttaagcttcctgctaccttagcgttatcaatcagtccaagttccattgtataaaatccctagcaagtctttgtttctttgtagtcagcttctcttctgttgatactgcctgttgtctccctggcaacatatttttctactttctctaataaatctgcctttgtttacctacaactgtcttggtaaatcttttccccctacaccacaggcccagttagtcgtcacttacctgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5215795 426 +   6154872 atgtggagtcctaatcagggaaaaggagtcaggctggtgggaccaggggaaagcagagataaagcaaacaagttataggtctgctttttttatggcccagggcacatggccctcc------------tgtacataactcacaaacttcctgcttaccatcaaacgcctcgatttatcaagcaccttggctgacagaagaatgcgggttacgcttcctgctaccttagcgttatcaatcagtccaagttccattgtataaaatccctagcaagtctttgtttctttgtagtcagcttctcttctgttgatactgcctgttgtctccctggcaacatatttttctactttctgtaataaatctgcctttctttacctacaactgtcttggtaaatcttttccccctacaccacaggcccagttagtcatcacttacctgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74217881 426 + 122973662 atgtggagtcctaatcagggaaaaggagtcaggctggtgggaccaggggaaagcagagataaagcaaacaagtgataggtctgctttttttatggcccagggcacatggccctcc------------tgtacataactcacaaacttcctgcttaccatcaaacccctcaatttatcaggcaccttggctgacagaagaatgcgggttaagcttcctgataccttagcgttatcaatcagtccaagttccattgtataaaatccctagcaagtctttgtttctttgtagtcagcttctcttctgttgattctgcctgttgtctccctggcaacatatttttctactttctgtaataaatctgcctttctttacctacaactgtcttggtaaatcttttccccctacaccacaggcccagatagtcgtcacttacctgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29395078 438 + 172585720 atgtggagtcctaattagggaaaaggagtcaggctggtgggagcaggggaaagcagaaataaagcaactaagcgataggtctgctttttttatggcccatggcacatggccctcctgcacagacaactgtacataactcacaaacttcctgcttaccatcaactgcctcaatttatcaagcaccttggctgacagaagaatgcgggttaagcttcctgctaccttagcattttcagtcagtccaagttccattgtataaaatccctagcaattctttgtttctttgtagtcagcttctcttctcttgatactgcctgttgtctccctggcaacgtatttttctactttgtctaataaatctgcctttctttacctacaactgtcttcataaatcttttccccccacaccacaggcccagatagtcatcacttacctgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29055963 438 - 170955103 atgtggagtcctaattagggaaaaggagtcaggctggtgggagcaggggaaagcagaaataaagcaactaagcgataggtctgctttttttatggcccatggcacatggccctcctgcacagacaactgtacataactcacaaacttcctgcttaccatcaactgcctcaatttatcaagcaccttggctgacagaagaatgcgggttaagcttcctgctaccttagcattttcagtcagttcaagttccattgtataaaatccctagcaattctttgtttctttgtagtcagcttctcttctcttgatactgcctgttgtctccctggcaacgtatttttctactttgtctaataaatctgcctttctttacctacaactgtcttcataaatcttttccccccacaccacaggcccagatagtcatcacttacctgt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1912541 438 -   2157725 atgtggagtcctaattagggaaaaagagtcaggctggtgggaccaggggaaagcagaaataaagcaactaagcgataggtctgccttttttatggctcatggcacatggccctcctgcacagacaattgtacataactcacaaacttcctacttaccatcaactgcctcaatttatcaagcaccttggctgacagaagaatgcgggttaagcttcttgctaccttagcgttttcagtcagtccaagttccattgtataaaatccctagcaattctttgtttctttgtagtcagcttctcttctcttgatactgcctgttgtctccctggcaacatatttttctactttgtctaataaatctgcctttctttacctacaactgtcttcataaatcttttccccccacaccacaggcccagatagtcatcacttacctgt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28352737 438 -  71996105 Atgtggagtcctaattagggaaaaggagtgaggctggtgggaccaggggaaagcagaaataaagcaactaagcgataggtctgctttttttatggcccatggcacatggccctcctgcacagacaactgtacataactcacaaacttcctgcttaccatcaactgcctcaatttatcaagcgccttggctgacagaagaatgcaggttaagcttcctgctaccttagcattttcagtcagtccaagttccattgtataaaatccctagcaattctttgtttctttgtagtcagcttctcttctcttgatactgcctgctgtctccctggcaacatatttttctaccttatctaataaatctgcctttctttacctacaactgtcttcataaatcttttccccccacaccacaggcccagatagtcatcacttacctgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2038689 431 +   2316924 atgtggagtcctaattagggaaaaagagtcaggctggtgggaccaggggaaagcagaaataaagcaactaagcgataggtctgcctttttt-------atggcacatggccctcctgcacagacaattgtacataactcacaaacttcctacttaccatcaactgcctcaatttatcaagcaccttggctgacagaagaatgcgggttaagcttcctgctaccttagcgttttcagtcagtccaagttccattgtataaaatccctagcaattctttgtttctttgtagtcagcttctcttctcttgatactgcctgttgtctccctggcaacatatttttctactttgtctaataaatctgcctttctttacctacaactgtcttcataaatcttttccccccacaccacaggcccagatagtcatcacttacctgt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1917877 438 -   3067355 atgtggagtcctaattagggaaaaggagtcaggctggtgggaccaggggaaagcagaaataaagcaattaagcgataggtctgctttttttatggcccagggcacatggccctcctgcacagacaactgtacataagtcacaaacttcctgcttaccatcaactgcctcaatttatcaagcaccttggctgacagaagaatgcgggttaagcttcctgctaccttagcgtttccagtcagtccaagttccattgtataaaatccctagcaattctttgtttctttgtagtcaacttctcttctcttgatactgcctgttgtttccctggcaacatatttttctactttgtctaataaatctgcctttctttacctacaactgtcttcataaatcttttccccccacaccacaggcccagatagtcatcacttacctgt
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995878 308 -   3516910 I
e canFam3.chr35             25924082 3404 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e macNem1.NW_012011356v1     2044385 564 -   2996164 I

a score=206170.000000
s hg38.chr6_GL000254v2_alt    194040 41 +   4827813 gacatt----ttacactgttgatccctccctccttggatcattct
s panTro5.chr6              29181511 41 + 175400573 gacatt----ttacactgttgatccctccctccttggatcattct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29415561 41 + 173848474 gacatt----ttacactgttgatccctccctccttggatcattct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5216221 41 +   6154872 gacatt----ttacattgttgatccctccctccttggatcattct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74218307 41 + 122973662 gacatt----ttacactgttgatccctcccgccttggatcattct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29395516 45 + 172585720 gacattaaaatgtcactgttgatccctccctcgttggatcattct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29056401 45 - 170955103 gacattaaaatgtcactgttgatccctccctcgttggatcattct
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1912979 45 -   2157725 gacattaaagtgtcactgttgatccctccctcattggatcattct
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28353175 45 -  71996105 gacaTTAAAATGTCACTGTTGATCCCTCCCTCGTTGGATCATTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2039120 45 +   2316924 gacattaaagtgtcactgttgatccctccctcgttggatcattct
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1918315 45 -   3067355 gacattaaaatgtcactgttgatccctccctcGCTGGATCATTCT
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25927486 41 +  26524999 ggcact----taacactgttgagccctccctccttGGATCATTCA
i canFam3.chr35            I 3404 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995878 308 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e macNem1.NW_012011356v1     2044385 564 -   2996164 I

a score=173527.000000
s hg38.chr6_GL000254v2_alt    194081 27 +   4827813 tcttcCAAGCAGCAAA--CTGAGTGGGAC
s panTro5.chr6              29181552 27 + 175400573 tcttcCAAGCAGCAAA--CTGAGTGGGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29415602 27 + 173848474 tcttcCAAGCAGCAAA--CTGAGTGGGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5216262 27 +   6154872 tcttcCAAGCAGCAAA--CTGAGTGGGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74218348 27 + 122973662 tcttcCAAGCAGCAAA--CTGAGTGGGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29395561 27 + 172585720 tcttcCAAGCAGCAAA--CTGAGTGGGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29056446 27 - 170955103 tcttcCAAGCAGCAAA--CTGAGTGGGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2044949 29 -   2996164 TCTTCCAAGCAGCAAAACCTGAGTGGGAC
i macNem1.NW_012011356v1   I 564 C 0
s cerAty1.NW_012001495v1     1913024 27 -   2157725 tcttcCAAGCAGCAAA--CTAAGTGGGAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28353220 27 -  71996105 TCTTCCAAGCAGCAAA--CTGAGTGGGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2039165 27 +   2316924 tcttcCAAGCAGCAAA--CTAAGTGGGAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1918360 27 -   3067355 TCTTCCAAGCAGCAAA--CTGAGTGGGAC
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25927527 27 +  26524999 TCCTCAGGTCACTAAG--GTGAGTAGGAC
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      995878 308 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I

a score=459742.000000
s hg38.chr6_GL000254v2_alt    194108 68 +   4827813 CTGATGAGGCCTAAAGTATTTCTGCT-TCTTCTATCTCCTTCTCTCTTATCTGTCTTTTACCAACTG-AT
s panTro5.chr6              29181579 68 + 175400573 CTGATGAGGCCTAAAGTATTTCTGCT-TCTTCTATCTCCTTCTCTCTTATCTGTCTTTTACCAACTG-AT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29415629 68 + 173848474 CTGATGAGGCCTAAAGTATTTCTGCT-TCTTCTATCTCCTTCTCTCTTATCTGTCTTTTACCAACTG-AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5216289 65 +   6154872 CTGATGAGGCCTAAAGTATTTCTGCT-TCTTCTATCTC---CTCTCTTATCTGTCTTTTACCAACTG-AT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74218375 68 + 122973662 CTGATGAGATCTAAAGTATTTCTGCT-TCTTGTATCTCCTTCTCGCTTATCTGTCTTTTACCAACTG-AT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29395588 68 + 172585720 CTGATAAGGCCTAAAgtatttctgct-tcttctatctccttctgtcttatctgtctttcACCAACTG-AC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29056473 68 - 170955103 CTGATAAGGCCTAAAgtatttctgct-tcttctatctccttctgtcttatctgtctttcACCAACTG-AC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2044978 70 -   2996164 CTGATAAGGCCTAAAGTATTTCTGCTCTCTTCTATCTCCTTCTGTCTTATCTGTCTTTCACCAACTGAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1913051 68 -   2157725 CTGATAAGGCCTAAAGTATttctgct-tcttctatctccttctctcttatctgtcttTCACCAACTG-AC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28353247 68 -  71996105 CTGATAAGGCCTAAAGTATttctgct-tcttctatctccttctctcttatctgtcttTCACCAACTG-AC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2039192 68 +   2316924 CTGATAAGGCCTAAAGTGTTTCTGCT-TCTTCTATCTCCTTCTCTCTTATCTGTCTTTCACCAACTG-AC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1918387 68 -   3067355 CTGATAAGGCCTAAAGTATttctgct-tcttctatctccttctctcttatctgtcttTCGTCAACTG-AC
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012147953v1      996186 68 -   3516910 CTGGTGAGGACTAAGGTATTTCTGCT-TCCTCCATCTCCTCCTGTCTTACTTGTCTTTTACCAATTA-AT
i proCoq1.NW_012147953v1   I 308 C 0
s canFam3.chr35             25927554 62 +  26524999 TTGGTGAGGCCTAAGGTATAGCTGCT-TCCTGTAGCTCCTCTTCTCT------GCCTCTACCATGTG-AT
i canFam3.chr35            C 0 I 1
e dasNov3.JH561790             80168 9105 -    302817 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I

a score=27294.000000
s hg38.chr6_GL000254v2_alt    194176 5 +   4827813 ACTAA
s panTro5.chr6              29181647 5 + 175400573 ACTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29415697 5 + 173848474 ACTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5216354 5 +   6154872 ACTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74218443 5 + 122973662 ACTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29395656 5 + 172585720 CCTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29056541 5 - 170955103 CCTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2045048 5 -   2996164 CCTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1913119 5 -   2157725 ACTAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28353315 5 -  71996105 CTTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2039260 5 +   2316924 ACTAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1918455 5 -   3067355 ACTAA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012147953v1      996254 5 -   3516910 ACTAA
i proCoq1.NW_012147953v1   C 0 I 1279
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25927616 1 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I

a score=88825.000000
s hg38.chr6_GL000254v2_alt    194181 15 +   4827813 CCTTAGTCTGGAAAA
s panTro5.chr6              29181652 15 + 175400573 CCTTAGTCTGGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29415702 15 + 173848474 CCTTAGTCTGGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5216359 15 +   6154872 CCTTAGTCTGGAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74218448 15 + 122973662 CCTTACTCTGGAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29395661 15 + 172585720 CCTTAGTCTGGAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29056546 15 - 170955103 CCTTAGTCTGGAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2045053 15 -   2996164 CCTTAGACTGGAAAA
i macNem1.NW_012011356v1   C 0 I 1098
s cerAty1.NW_012001495v1     1913124 15 -   2157725 CCTTAGTCTGGAAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28353320 15 -  71996105 CCTTAGTCTGGAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2039265 15 +   2316924 CCTTAGTCTGGAAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1918460 15 -   3067355 CCTTAGTCTGGAAAA
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e canFam3.chr35             25927616  1 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I

a score=243772.000000
s hg38.chr6_GL000254v2_alt    194196 58 +   4827813 ATAAAAAAT-TATCATAATAAATACAAGAATACAGTA------CTTAAGAAGCCAACGTATTAGA
s panTro5.chr6              29181667 57 + 175400573 ATAAAAAAT-TATCATAATAAATACAAGAATACAGTA------CTTAAGAAGCCAACGTA-TAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29415717 56 + 173848474 AT-AAAAAT-TATCATAATAAATACAAGAATACAGTA------CTTAAGAAGCCAACGTA-TAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5216374 57 +   6154872 ATAAAAAAT-TATCATAATAAATAGAAGAATACAGTA------CTTAAGAAGCCAACGTA-TAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74218463 57 + 122973662 ATAAAAAAT-TATCATAATAAATACAAGAATGCAGTA------CTTAAGAAGCCAACATA-TAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29395676 58 + 172585720 ATAAAAAAACTATCGTAATAAATACAAGAATACAGTA------CTTAAGAAGCCAGCATA-TAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29056561 58 - 170955103 ATAAAAAAACTATCGTAATAAATACAAGAATACAGTA------CTTAAGAAGCCAGCATA-TAGA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1913139 57 -   2157725 ATAAAAAAG-TATCGTAATAAATACAAGAATACAGTA------CTTAAGAAGCCAACATA-TAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28353335 57 -  71996105 ATAAAAAAC-TATCATAATAAATACAAGAATACAGTA------CTTAAGAAGCCAGCATA-TAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2039280 57 +   2316924 ATAAAAAAG-TATCGTAATAAATACAAGAATACAGTA------CTTAAGAAGCCAGCATA-TAGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1918475 63 -   3067355 ATAAAAAAT-TATCGTAATAAATACAAGAATACTATATGCTGGCTTAAGAAGCCAGCATA-TAGA
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e canFam3.chr35             25927616  1 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e macNem1.NW_012011356v1     2045068 1098 -   2996164 I

a score=213867.000000
s hg38.chr6_GL000254v2_alt    194254 41 +   4827813 TGAGACAGAATGGGAAATGGAGAAAAAGACAAAATATCAAT
s panTro5.chr6              29181724 41 + 175400573 TGAGACAGAATGGGAAATGGAGAAAAAGACAAAATATCAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29415773 41 + 173848474 TGAGACAGAATGGGAAATGGAGAAAAAGACAAAATATCAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5216431 41 +   6154872 TGAGACAGAATGGGAAATGGAGAAAAAGACAAAATATCAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74218520 41 + 122973662 TGAGACAGAATGGGAAATGGAGAAAAAGACAAAATATCAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29395734 41 + 172585720 TGAGACAGAATGGGAAATGGAGAAAAGGACGAAATATCAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29056619 41 - 170955103 TGAGACAGAATGGGAAATGGAGAAAAGGACAAAATATCAAT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1913196 41 -   2157725 TGAGACAGAATGGAAAATGGAGAAAAGGATGAAATATCAAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28353392 41 -  71996105 TGAGACAGAATGGGAAATGGAGAAAAGGACGAAATATCAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2039337 41 +   2316924 TGAGACAGAATGGAAAATGGAGAAAAGGATGAAATAGCAAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1918538 41 -   3067355 TGAGACAGAATGGGAAATGGAGAAAAGGATGAAATATCAAT
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25927617 41 +  26524999 TGGGACAGAATAGAAGCTGAGGACTAGGCCCAAATCTGAAT
i canFam3.chr35            I 1 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e macNem1.NW_012011356v1     2045068 1098 -   2996164 I

a score=1427973.000000
s hg38.chr6_GL000254v2_alt    194295 321 +   4827813 AAGAATTTAACATTAATATAAGGTccgggcgcggtggcttatgcagggtaatcccagcacttcgggaggccacggcttgagtttaggagtttgagaccagcctgggcaacatggtgaaacccagtctttaccaaaaatacaaaaaattagctgggtgttgcggcgtgcacctgtggtcccagctactggggaggctaaggtgggaggatcccttgatcccaggaggcagaggttgcagtgagccgagattgcaccactgcactccagcctgggtgacagagccagaccccatttcc-aaa--------aaa---aaaaaaaaaaaaaaaaaaa
s panTro5.chr6              29181765 317 + 175400573 AAGAATTTAACATTAATATAAGGTccgggcgcggtggcttatgcagggtaatcccagcactttgggaggccacagcttgagtttaggagtttgagaccagcctgggcaacatggtgaaacccagtctttaccaaaaatacaaaaaattagctgggtgttgcggcgtgcacctgtggtcccagctactggggaggctaaggtgggaggatcccttgatcccaggaggcagaggttgcagtgagccgagattgcaccactgcactccagcctgggtgacagagccagaccccatttcc-------------aa---aaaaaaaaaaaaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29415814 308 + 173848474 AAGAATTTAACATTAATATAAGGTccgggcgcggtggcttatgcagggtaatcccagcactttgggaggccacggcttgagtttaggagtttgagaccagcctgggcaacatggtgaaacccagtctttaccaaaaatacaaaaaattagctgggtgttgcggcgtgcacctgtggtcccagctactggggaggctaaggtgggaggatcccttgatcccaggaggcagaggttgcagtgagccgagattgcaccactgcactccagcctgggtgacagagccagaccccattt-------------------------aaccaaaaaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5216472 322 +   6154872 AAGAATTTAACATTAATGTAAGGTccgggagcggtggcttatgcagggtaatcccagcactttgggaggccacggcttgagtttaggagtttgagaccagcctgggcaacatggtgaaacccagtctttaccaaaaatacaaaaaattagctgggtgtggtggcgtgcacctgtggtcccagctactggggaggctaaggtgggaggatcccttgatcccaggaggcagaggttgcagtgagccgagattgcaccactgcactccagcctgggtgacagagccagaccccatctccaaaa--------aaa---aaaaaaaaaaaaaaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74218561 329 + 122973662 AAGAACTTAACATTAACATAAGggccaggcgtggtggctcatgcagggtaatcccagcactttgggaggccagggcttgagtttaggagtttgagaccagcctaggcaacatggtgaaacccagtctttatcaaaaatacaaaacattagctgggtgtggtggcgtgtgcctgtggtcccagctactggggaggctaaagtgggaagat-cctggagcccaggaggcagaagttgcagtgagccaagattgcaccactgcactccagcctgggtgacagagccagaccccatctccaaaaaaaaaaacaaa---aaaaaaaacaaacaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29395775 325 + 172585720 AAGAATTTAGCATTAATATAAGggccaggtgcggtggctcacgcagggtaatcccagcagtttgggaggccacggcttgagctcaggagtttgagaccagcctgggcaacatggtgaaacccagtctttaccaaaaatacaaaaaattagctgggtgtagtggtgtgcacctttggtcacagctactcgggaggctaaggtgggaggatcccttgagcccaggaggcagaggtcgcagttagctgagattccaccactgcactccagcctgggtaacagagccagaccccgtctccaaaa--------aagaaaaaaaaaaaaaaaaaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29056660 322 - 170955103 AAGAATTTAGCATTAATATAAGggccaggtgcggtggctcacgcagggtaatcccagcagtttgggaggccacggcttgagctcaggagtttgagaccagcctgggcaacatggtgaaacccagtctttaccaaaaatacaaaaaattagctgggtgtagtggtgtgcacctgtggtcacagctactcgggaggctaaggtgggaggatcccttgagcccaggaggcagaggtcgcagttagctgagattccaccactgcactccagcctgggtaacagagccagaccccgtctccaaaa--------aag---aaaaaaaaaaaaaaaaaaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1913237 316 -   2157725 AAGAATTTAGCATTAATATAAGggccaggtgcggtggctcatgcagggtaatcccagcactttgagaggccacggcgtgagctcaggagtttgagaccagcctgggcaacatggtgaaacccagtctttacc-aaaatacaaaaaattagctgggtgtggtggtgtgcacctgtggtcacagctacttgggaggctaaggtgggaggatcccttgagcccaggaggcagaagttgcagttagctgagactccaccactgcactccagcctgggtgacaaagccagaccccgtctccaaaa--------aat--------aaaaaaataaaaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28353433 321 -  71996105 AAGAATTTAACATTAATATAAGggccaggtgcggtggctcatgcagggtaatcccagcagtttgggaggccacggcttgagctcaggagtttgagaccagcctgggcaacatggtgaaacccagtctttaccaaaaatacaaaaaattagctgggtgtagtggtgtgcacctgtggtcacagctactcgggaggctaaggtgggaggatcccttgagcccaggaggcagaggttgcagttagctgagattccaccactgcactccagcctgggtgacagagccagaccccatctccaaaa--------aag----aaaaaaaaaaaaaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2039378 316 +   2316924 AAGAATTTAGCATTAATATAAGggccaggtgcggtggctcatgcagggtattcccagcactttgggaggccacagcgtgagctcaggagtttgagaccagcctgggcaacatggtgaaacccagtctttacc-aaaatacaaaaaattagctgggtgtggtggtgtgcacctgtggtcacagctacttgggaggctaaggtgggaggatcccttgagcccaggaggcagaagttgcagttagctgagactacaccactgcactccagcctgggtgacaaagccagaccccgtctccaaaa--------aat--------aaaaaaataaaaaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1918579 312 -   3067355 AAGAATTTAACATTAATATAAGggccaggtgcggtggctcatgcagggtaatctcagcactttgggaggccacggcttgagcttaggagtttgagaccagcctgggcaacatggtgaaacccagtctttaccaaaaatacaaaaaattagctgggtgtggtggtatgcacttgtggtcacagctactcgggaggctaagatgggaggatcccttgagcccaggaggcagaggttgcagttagctgagattccaccactgcactccaggctgggtgacagagccagaccccgtctccaaaa--------aag-------------aaaaaaaaa
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e canFam3.chr35             25927658   0 +  26524999 C
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e macNem1.NW_012011356v1     2045068 1098 -   2996164 I

a score=189244.000000
s hg38.chr6_GL000254v2_alt    194616 34 +   4827813 aaGAATTTAGTACAAGATACAGGAGAAATTGCAG
s panTro5.chr6              29182082 34 + 175400573 aagaaTTTAGTACAAGATACAGGAGAAATTGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29416122 34 + 173848474 agaaTTTTAGTACAAGATACAGGAGAAATTGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5216794 34 +   6154872 aaGAATTTAGTACAAGATACAGGAGAAATTGCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74218890 34 + 122973662 aaGAATTTAGTACAAGATACAGGAGAAATTGCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29396100 34 + 172585720 aaGAATTTAGTACAAGATGCAGGAGAAATTGCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29056982 34 - 170955103 aaGAATTTAGTACAAGATGCAGGAGAAATTGCGG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1913553 34 -   2157725 aagaaTTTAGTACAAGATGCAGGAGAAATTGCAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28353754 34 -  71996105 aaGAATTTAGTACAAGATGCAGGAGAAATTGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2039694 34 +   2316924 aagaaTTTAGTACAAGATGCAGGAGAAATTGCAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1918891 34 -   3067355 aagaaTTTAGTACAAGATACAGGAGAAATTGCAG
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25927658 34 +  26524999 AGGAATTTAGTCCAAGACAAAAGAGAAATTTCAG
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e macNem1.NW_012011356v1     2045068 1098 -   2996164 I

a score=246608.000000
s hg38.chr6_GL000254v2_alt    194650 56 +   4827813 GTTGGTG--CTATACattcaataaatgattgtggaataactggctagctaCTTGGGAG
s panTro5.chr6              29182116 56 + 175400573 GTTGGTG--CTATACATTCAATAAATGATTGTGGAATAACTGGCTAGCTACTTGGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29416156 56 + 173848474 GTTGGTG--CTATACattcaataaatgattgtggaataactggctagctaCTTGGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5216828 56 +   6154872 GTTGGTG--CTATACattcaataaatgatcgtggaataactggctagctaCTTGGGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74218924 56 + 122973662 GTTGGTG--CTATACattcaataaatgatcatggaataactggctagctatTGAGGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29396134 58 + 172585720 GTTGGTGCCCTATACattcgataaatgatcgtggaataactggctagctatttgggag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29057016 58 - 170955103 GTTGGTGCCCTATACattcaataaatgatcgtggaataactggctagctatttgggag
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1913587 58 -   2157725 GTTGGTGCCCTATACattcaataaatgatcatggaataactggctagctatttgggag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28353788 58 -  71996105 GTTGGTGCCCTATACattcaataaatgatcgtggaataactggctagctatTCGGGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2039728 58 +   2316924 GTTGGTGCCCTATACattcaataaatgatcatggaataactggctagctatttgggag
i manLeu1.NW_012104165v1   C 0 C 0
s canFam3.chr35             25927692 57 +  26524999 GTTGGTG-TTTGCACATTCAGTAAATGATCCTAGAACATTTGGCCAGCTATTTGGGGG
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1918925  0 -   3067355 C
e macNem1.NW_012011356v1     2045068 1098 -   2996164 I

a score=40953.000000
s hg38.chr6_GL000254v2_alt    194706 9 +   4827813 AAAAAAGAT
s panTro5.chr6              29182172 9 + 175400573 AAAAAAGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29416212 9 + 173848474 AAAAAAGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5216884 9 +   6154872 AAAAAAGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74218980 7 + 122973662 AAAAAAA--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29396192 9 + 172585720 aaaaaagat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29057074 9 - 170955103 aaaaaagat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2046166 9 -   2996164 AAAAAAGAT
i macNem1.NW_012011356v1   I 1098 C 0
s cerAty1.NW_012001495v1     1913645 9 -   2157725 aaaaaagat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28353846 9 -  71996105 AAAAAAGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2039786 9 +   2316924 aaaaaagat
i manLeu1.NW_012104165v1   C 0 C 0
s canFam3.chr35             25927749 7 +  26524999 --GAAAAAT
i canFam3.chr35            C 0 I 414
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1918925 0 -   3067355 C

a score=191301.000000
s hg38.chr6_GL000254v2_alt    194715 35 +   4827813 CTCATCTCACTTCTTATACTGAACTATATTATTGA
s panTro5.chr6              29182181 35 + 175400573 CTCATCTCACTTCTTATACTGAACTATATTATTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29416221 35 + 173848474 CTCATCTCACTTCTTATACTGAACTATATTATTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5216893 35 +   6154872 CTCATCTCACTTCTTATACTGAACTATATTATTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74218987 32 + 122973662 ---ATCTCACTTCTTATACTGAACTATATTGTTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29396201 35 + 172585720 ctcatctcacttcttatacTGAACTGTATTATTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29057083 35 - 170955103 ctcatctcacttcttatacTGAACTGTATTATTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2046175 35 -   2996164 CTCATCTCACTTCTTATACTGAACTGTATTATTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1913654 35 -   2157725 ctcatctcacttcttatacTGAACTGTATTATTGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28353855 35 -  71996105 CTCATCTCACTTCTTACACTGAACTGTATTATTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2039795 35 +   2316924 ctcatctcacttcttatacTGAACTGTATTATTGA
i manLeu1.NW_012104165v1   C 0 C 0
s canFam3.chr35             25928170 35 +  26524999 ccCATCTTACTTCTTATACCAAAATATATTTCAGA
i canFam3.chr35            I 414 I 827
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1918925  0 -   3067355 C

a score=101393.000000
s hg38.chr6_GL000254v2_alt    194750 24 +   4827813 TCAATGAAA-------TTTTTTTAAGAAAAT
s panTro5.chr6              29182216 24 + 175400573 TCAATGAAA-------TTTTTTTAAGAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29416256 24 + 173848474 TCAATGAAA-------TTTTTTTAAGAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5216928 25 +   6154872 TCAATGAAA------TTTTTTTTAAGAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74219019 21 + 122973662 TCAATGAAA-------TTTTTTTAAGAA---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29396236 24 + 172585720 TCAATGAAA-------TTTTTTAAAGAAAAT
i rheMac8.chr4             C 0 I 300
s macFas5.chr4              29057118 24 - 170955103 TCAATGAAA-------TTTTTTAAAGAAAAT
i macFas5.chr4             C 0 I 300
s macNem1.NW_012011356v1     2046210 24 -   2996164 TCAATGAAA-------TTTTTTAAAGAAAAT
i macNem1.NW_012011356v1   C 0 I 300
s cerAty1.NW_012001495v1     1913689 24 -   2157725 TCAATGAAA-------TTTTTTAAAGAAAAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28353890 24 -  71996105 TCAATGAAA-------TTTTTTAAAGGAAAT
i chlSab2.chr17            C 0 I 324
s manLeu1.NW_012104165v1     2039830 24 +   2316924 TCAATGAAA-------TTTTTTAAAGAAAAT
i manLeu1.NW_012104165v1   C 0 C 0
s canFam3.chr35             25929032 29 +  26524999 TCAGTGAAAAGGCTTATATTTTTAAAATT--
i canFam3.chr35            I 827 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1918925  0 -   3067355 C

a score=8426.000000
s hg38.chr6_GL000254v2_alt    194774 2 +   4827813 TA
s panTro5.chr6              29182240 2 + 175400573 TA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29416280 2 + 173848474 TA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5216953 2 +   6154872 TA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74219040 1 + 122973662 -A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29396560 2 + 172585720 TA
i rheMac8.chr4             I 300 C 0
s macFas5.chr4              29057442 2 - 170955103 TA
i macFas5.chr4             I 300 C 0
s macNem1.NW_012011356v1     2046534 2 -   2996164 TA
i macNem1.NW_012011356v1   I 300 C 0
s cerAty1.NW_012001495v1     1913713 2 -   2157725 TA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28354238 2 -  71996105 ta
i chlSab2.chr17            I 324 C 0
s manLeu1.NW_012104165v1     2039854 2 +   2316924 TA
i manLeu1.NW_012104165v1   C 0 I 314
s canFam3.chr35             25929061 2 +  26524999 TC
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1918925 0 -   3067355 C

a score=16269.000000
s hg38.chr6_GL000254v2_alt    194776 4 +   4827813 ATCC-
s panTro5.chr6              29182242 4 + 175400573 ATCC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29416282 4 + 173848474 ATCC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5216955 4 +   6154872 ATCC-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74219041 4 + 122973662 ATCC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29396562 4 + 172585720 ATCC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29057444 4 - 170955103 ATCC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2046536 4 -   2996164 ATCC-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1913715 4 -   2157725 ATCC-
i cerAty1.NW_012001495v1   C 0 I 654
s chlSab2.chr17             28354240 4 -  71996105 atCC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2040170 4 +   2316924 ATCC-
i manLeu1.NW_012104165v1   I 314 C 0
s canFam3.chr35             25929063 4 +  26524999 -TTTT
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1918925 0 -   3067355 C

a score=103752.000000
s hg38.chr6_GL000254v2_alt    194780 29 +   4827813 ATAAAAATTCCAGGAAAAAGAAAACTGAT
s panTro5.chr6              29182246 29 + 175400573 ATAAAAATTCCAGGAAAAAGAAAACTGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29416286 29 + 173848474 ATAAAAATTCCAGGAAAAAGAAAACTGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5216959 25 +   6154872 ATAAAAATTCTAGGAAAAAGAAAAC----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74219045 25 + 122973662 ATAAAAATTCTAGGAAAAAGAAAAC----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29396566 29 + 172585720 ATAAAAATTCTAGGAAAAAGAAAACTGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29057448 29 - 170955103 ATAAAAATTCTAGGAAAAAGAAAACTGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2046540 29 -   2996164 ATAAAAATTCTAGGAAAAAGAAAACTGAT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28354244 29 -  71996105 ATAAAAATTCTAGGAAAAAGAAAACTGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2040174 28 +   2316924 ATAAAAATTCTAGGAAAAAGAAAACTGA-
i manLeu1.NW_012104165v1   C 0 C 0
s canFam3.chr35             25929067 29 +  26524999 ATAGAAAAGCCCTTTTTAAAAAAACTGGT
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1918925  0 -   3067355 C
e cerAty1.NW_012001495v1     1913719 654 -   2157725 I

a score=2415103.000000
s hg38.chr6_GL000254v2_alt    194809 487 +   4827813 TGA--TTTTTTTTAAGGCACTTGTCATCT---GGAAGATCTTTCTAAACATGACCCCA----CAGAAGTCACAAATGGATAAATTTGGTTACACAGAATTCAAAATTAGATGTCTTCTT-AT--AAAAAAATTTTCTAAACAGCTGAATGATAAAGGAAAA--TTGGGGAAAGATGTTTTTAGCAAATT-AAACAAAGGATGAATTTCCTTG--AGACAAAATATTTGCACAAATAAAAGCAAAAAAAGAGAGAagaaaaatgagcaaaggtcatgaacagatggtacagagaaaaagaacaaatggtcaataaacatgtgaaaagagg------------------------------tgatgt--taattttaatttatgagattagcaaagatttaaaactttgacagtattcagtattaatgagaatatgaggaattcca-------gtacactgtgag---aatgtaaattgggagaacaccattgaaagcaatttgacaattgggctgggcgcggtggctcacgcctgtaatcccaacac
s panTro5.chr6              29182275 487 + 175400573 TGA--TTTTTTTTAAGGCACTTGTCATCT---GGAAGATCTTTCTAAACATGACCCCA----CAGAAGTCACAAATGGATAAATTTGGTTATACAGAATTCAAAATTAGATGTCTTCTT-GT--AAAAAAATTTTCTAAACAGCTGAATGATAAAGGAAAA--TTGGGAAAAGATGTTTTTAGCAAATT-AAACAAAGGATGAATTTCCTTG--AGACAAAATATTTGCACAAATAAAAGCAAAAAAAGAGAGAagaaaaatgagcaaaggtcatgaacagatggtacagagaaaaagaacaaagggtcaataaacatgtgaaaagagg------------------------------tgatgt--taattttaatttatgagattagcaaagatttaaaactttgacaatattcagtattaatgagaatatgaggaattcca-------gtacactgtgag---aatgtaaattgggagaacaccattgaaagcaatttgacaattgggctgggcgcggtggctcacgcctgtaatcccaacac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29416315 487 + 173848474 TGA--TTTTTTTTAAGGCACTTGTCATCT---GGAAGATCTTTCTAAACATGACCCCA----CAGAAGTCACAAATGGATAAATTTGGTTATACAGAATTCAAAATTAGATGTCTTCTT-AT--AAAAAAATTTTCTAAACAGCTGAATGATAAAGGAAAA--TTGGGAAAAGATGTTTTTAGCAAATT-AAACAAAGGATGAATTTCCTTG--AGACAAAATATTTGCACAAATAAAAGCAAAAAAAGAGAGAagaaaaatgagcaaaggtcatgaacagatggtacagagaaaaagaacaaatggtcaataaacatgtgaaaagagg------------------------------tgatgt--taattttaatttatgagattagcaaagatttaaaactttgacaatattcagtattaatgagaatatgaggaattcca-------gtacactgtgag---aatgtaaattgggagaacaccattgaaagcaatttgacaattgggctgggcgcggtggctcacgcctgtaatcccaacac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5216984 488 +   6154872 TGA--TTTTTTTTAAGGCACTTGTCATCT---GGAAGATCTTTCTAAACATGACCCCA----CAGAAGTCACAAATGGATAAATTTGGTTATACAGAATTCAAAATTAGATGTCTTCTT-AT-AAAAAAAATTTTCTAAACAGCTGAATGATAAAGGAAAA--TTGGGGAAAGATGTTTTTAGCAAATT-AAACAAAGGATGAATTTCCTTG--AGACAAAATATTTGCACAAATAAAAGCAAAAAAAGAGAGAagaaaaatgagcaaaggtcatgaacagatggtacagagaaaaagaacaaatggtcaataaacatgtgaaaagagg------------------------------tgatgt--taattttaatttatgagattagcaaagatttaaaactttgacagtattcagtattgatgagaatatgaggaattcca-------gtacactgtgag---aatgtaaattgggagaacaccattgaaagcaatttgacaattgggctgggagcggtggctcacgcctgtaatcccaacgc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74219070 485 + 122973662 TGA--TTTTTTTTAAAGCACTTGTCATCT---GGAAGATCTTTCTAAACATGACCCCA----CAGAAGTCACAAATGGATAAATTTGATTATACAGAATTCAAAATTAGATGACTTATA-AT-AAAAAAAATTTTCTAAACAGCTGAATGATAAAGGAAAA--TTGGGGAAAGATGTTTTTAGCAAATT-AAAAAAAGGATGAATTTCCTTG--AGACAAAATATTTGCACAAATAAAAGCAAAAAAAGAGAGAagaaaaatgagcaaaggtcatgaacagatggtacagagataaagaacaaatggtcaataaac--gtgaaaagagg------------------------------tgatgt--taattttaatttatgagattagcaaagatttaaaactttgacagtattcagtattgatgagaacatgaggaattcca-------gta-actgtgag---aatgtaaattgggagaacaccattgaaagcaatttgacaattgggctgggcacggtggctcacgcctgtaatcccaacac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29396595 483 + 172585720 -----TTTTTTAAAAAGCACTTGTCATCT---GGAAGATCTTTGTAAATATGACCCCA----CAGAAGTCACAAATGGATAAATTTGATAATACAGAATTCAAAATTAGATGACTTCTA-AT-AAAAAAAACTTTCTAAACAACTGAATGATAAAGGAAAATTTTGGGGAAAGACATTTTTAGCAAATA-AAACAAAGGATGAATTTCCTTGAAAGACAAAATATTTCCACAAATAAAAGCAAAAAAAGAGAGAagaaaaacgagcaaaggtcataaacagatggtacag------agaacaaatggtcaataaacatgtgaaaagaGG------------------------------Tgatgt--taattttaatttatgagattagcaaagacttagaactttgacagtattcagtattgatgagaatatgaggaattcca-------gtacactgtgga---aatgtaaattgggagaacaccgttgaaagcaatttgacaattgggccgggcgcagtggctcacgcctgtactcccaacac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29057477 483 - 170955103 -----TTTTTTAAAAAGCACTTGTCATCT---GGAAGATCTTTGTAAATATGACCCCA----CAGAAGTCACaaatggataaatttgataatacagaattcaaaattagatgacttcta-at-aaaaaaaactttctaaacaactgaatgataaaggaaaattttggggaaagatatttttagcaaata-aaacaaaggatgaatttccttgaaagacaaaatatttccacaaataaaagcaaaaaaagagagaagaaaaacgagcaaaggtcataaacagatggtacag------agaacaaatggtcaataaacatgtgaaaagAGG------------------------------Tgatgt--taattttaatttatgagattagcaaagacttagaactttgacagtattcagtattgatgagaatatgaggaattcca-------gtacactgtgga---aatgtaaattgggggaacaccgttgaaagcaatttgacaattgggccgggcgcagtggctcacgcctgtactcccaacac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2046569 483 -   2996164 -----TTTTTTAAAAAGCACTTGTCATCT---GGAAGATCTTTGTAAATATGACCCCA----CAGAAGTCACAAATGGATAAATTTGATAATACAGAATTCAAAATTAGATGACTTCTA-AT-AAAAAAAACTTTCTAAACAACTGAATGATAAAGGAAAATTTTGGGGAAAGATATTTTTAGCAAATA-AAACAAAGGATGAATTTCCTTGAGAGACAAAATATTTCCACAAATAAAAGCAAAAAAAGAGAGAagaaaaatgagcaaaggtcataaacagatggtacag------agaacaaatggtcaataaacatgtgaaaagaGG------------------------------Tgatgt--taattttaatttatgagattagcaaagacttagaactttgacagtattcagtattgatgagaatatgaggaattcca-------gtacactgtgga---aatgtaaattgggagaacaccgttgaaagcaatttgacaattgggccgggcgcagtggctcacgcctgtactcccaacac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1914373 487 -   2157725 TGA--TTTTTTTAAAAGCACTTGTCATCT---GGAAGATCTTTGTAAATATGACCCCA----CAGAAGTCACAAATGGATAAATTTGATTATACAGAATTCAAAATTAGATGACTTCTA-ATAAAAAAAAATTTTCTAAACAACTGAATGATAAAGGAAAATTTTGGGGAAAGATATTTTTAGCAAATA-AAACAGAGGATGAATTTCCTTGAGAGACAAAATATTTCCACAAATAAAAGCAAAAAAAGAGAGAagaaaaacgagcaaaggtcataaacagatggtacag------agaacaaatggtcaataaacatgtgaaaagaGG------------------------------Tgatgt--taattttaatttatgagattagcaaagatttaaaactttgacagtattcagtattgatgagaatatgaggaattcca-------gtacactgtgga---aatgtaaattgggagaacaccattgaaagcaatttgacaattgggccgggcgcagtggctcacgcctgtactcccaacac
i cerAty1.NW_012001495v1   I 654 C 0
s chlSab2.chr17             28354273 480 -  71996105 -----TTTTTTTAAAAGCACTTGTCATCT---GGAAGATCTTTGTAAATATGACCCCA----CAGAAGTCACAAATGGATAAATTTGATTATACAGAATTCAAAATTAGATGACTTGTA-ATAAAAAAAAAATTTCTAAACAACTGAATGATAAAGGAAAATTTTGGGGAAAGATACTTTTAGCAAATA-AAACAAAGAACAAATTTCCTTGAGAGACAAAATATTTCCACAAATAAAAGCAAAA----AGAGAagaaaaatgagcaaaggtcataaacagatggtacag------agaacaaatggtcaataaacatgtgaaaagaGG------------------------------TGATGT--TAattttaatttatgagattagcaaagatttagaactctgacagtattcagtattgatgagaatatgaggaattcca-------gtacactgtgga---aatgtaaattgggagaacaccattgaaagcaatttgacaattgggccgggcgcagtggctcacgcctgtactcccaacac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2040202 483 +   2316924 -----TTTTTTTAAAAGCACTTGTCATCT---GGAAGATCTTTGTAAATATGACCCCA----CAGAAGTCACAAATGGATAAATTTGATTATACAGAATTCAAAATTAGATGACTTCTA-AT-AAAAAAAATTTTCTAAACAACTGAATGATAAAGGAAAATTTTGGGGAAAGATATTTTTAGCAAATA-AAACAGAGGATGAATTTCCTTGAGAGACAAAATATTTCCACAAATAAAAGCAAAAAAAGAGAGAagaaaaacgagcaaaggtcataaacagatggtacag------agaacaaatggtcaataaacatgtgaaaagagg------------------------------tgatgt--taattttaatttatgagattagcaaagatttaaaactttgacagtattcagtattgatgagaatatgaggaattcca-------gtacactgtgga---aatgtaaattgggagaacaccattgaaagcaatttgacaatTGggccgggcgcagtggctcacgcctgtactcccaacac
i manLeu1.NW_012104165v1   C 0 C 0
s canFam3.chr35             25929096 493 +  26524999 TGATTTTTTTTTTAA-------GTTATCTAGAGGAAGGTCTTTCTAAACATAACCACAAACTCAGAAACCACACGTGGATACACTTGATTGCATAAAATTAAAAAGCAAATGACTTCTATAC-AGAAAAGTACCTTTAAACAGTCGAACAATAAAGGAAAA--TTAGGAAAAG-TATTTTTTGCAAATACACACAATGGATAAATTTCCTTGAGAGACAAAATACTTTCAGAAATATAACTAAAATGCAGAGGAAGTAAGAC-------------------ATAGgaaaa------agaacagttggttcataaacatgtgaaaagaagttcaactcactcattgttcatggaataaaataatgtgatgcttgtaatttatgagattagtgaagattacaaagctcggcaatactcggtattggtgagaatgtgaggaaagtcagcccttggtgtgctggggaatgaatataagttgggagaacattgctgagaataatttg---------------gtgatagctaacaa--gtaattttaatgc
i canFam3.chr35            C 0 I 93
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1918925   0 -   3067355 C

a score=162604.000000
s hg38.chr6_GL000254v2_alt    195296 39 +   4827813 ttttgggagctgaggcgggtggctcacctgaggtcagga
s panTro5.chr6              29182762 39 + 175400573 ttttgggagctgaggcgggtggctcacctgaggtcagga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29416802 39 + 173848474 ttttgggagctgaggcgggtggctcacctgaggtcagga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5217472 39 +   6154872 ttttgggagctgaggcgggtggctcacctgaggtcagga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74219555 39 + 122973662 ttttcggggctgaggcggttggctcacctgaggtcagga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29397078 39 + 172585720 tttgggaggctgaggcgggtggataccctgaggtcagga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29057960 39 - 170955103 tttgggaggctgaggcgggtggataccctgaggtcagga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2047052 39 -   2996164 tttgggaggctgaggcgggtggataccctgaggtcagga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1914860 39 -   2157725 tctgggaggctgaggccggtggatcacctgaggtcagga
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28354753 39 -  71996105 tttggcaggctgaggcgggtggataccctgaggtcagga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2040685 39 +   2316924 tctgggaggctgaggccggtggatcacctgaggtcagga
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e canFam3.chr35             25929589 93 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e colAng1.NW_012115566v1     1918925  0 -   3067355 C

a score=1146347.000000
s hg38.chr6_GL000254v2_alt    195335 206 +   4827813 gttcgaggccagcctgaccaacacggagaaactctgtctctattaaaaatacaaaattagctgggcgtgttggcgcatgcctgtaatcccagctactcaggaggctgaggcaggagaatagcttgaacccgggaggcagatgttgcggtgagccgaggtcacgccattgcactccatcctgggtgacaagagcaaaactccatctc
s panTro5.chr6              29182801 206 + 175400573 gttcgaggccagcctgacaaacatggagaaactctgtctctactaaaaatacaaaattagctgggcgtgttggcgcatgcctgtaatcccagctactcaggaggctgaggcaggagaatagcttgaacccgggaggcagatgttgcggtgagccgaggtcacaccattgcactccatcctgggtgacaagagcaaaactccatctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29416841 206 + 173848474 gttcgaggccagcctgacaaacatggagaaactctgtctctactaaaaatacaaaattagctgggcgtgttggcgcatgcctgtaatcccagctactcaggaggctgaggcaggagaatagcttgaacccgggaggcagatgttgcggtgagccgaggtcacgccattgcactccatcctgggtgacaagagcaaaactccatctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5217511 206 +   6154872 gttcgaggccagcctgaccaacatggagaaactctgtctctactaaaaatacaaaattagctgggcatgttggcgcatgcctgtaatcccagctactcaggaggctgaggcaggagaatagcttgaacccgggagacagatgttgcggtgagccgaggtcacgccattgcactccatcctgggtgacaagagcaaaactccatctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74219594 204 + 122973662 gttcgaggccagcctgaccaacatggagaaaccctgtgtctactaaaaatacaaaattagccgggtgtgttggcacatgcccgtaatcccagctactcaggaggctgaggcaggagaatagcttgaacctgggaggcaaatgttgcagtgagccgagatcacgccattgcactccagcctgggtgac--gagcgaaactccatctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29397117 206 + 172585720 gtttgaggccagcctgaccaacatcgagaaaccctgtctctactaaaaatacaaaattagctaggcgtggtggcgcacacctgtaatcccagctactcaggagcctgaggaaggagaattgcttgaacccaggaggcggatgttgcggtgagccgacatcacgccattgcactccagcatgggcgacaagagcaaaacttcatctc
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              29057999 206 - 170955103 gttcgaggccagcctgaccaacatggagaaaccctgtgtctactaaaaatacaaaattagctaggcgtggtggcgcacacctgtaatcccagctactcaggagcctgaggaaggagaattgcttgaacccgggaggcggatgttgcggtgagccgacatcacgccattgcactccagcatgggcgacaagagcaaaacttcatctc
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     2047091 206 -   2996164 gttcgaggccagcctgaccaacatggagaaaccctgtctctactaaaaatacaaaattagctaggcgtggtggcgcacacctgtaatcccagctactcaagagcctgaggaaggagaattgcttgaacccgggaggcggatgttgcggtgagccgacatcacgccattgcactccagcatgggcgacaagagcaaaacttcatctc
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012001495v1     1914899 206 -   2157725 gttcgaggccagcctgaccaacatggagaaaccctgtctctactaaaaatacaaaattagctagtcgtggtggcgcacacctgtaatcccagctactcaggggcctgaggaaggagaattgcttgaacccggtaggcggatgttgcggtgagccgagatcacgccattgcactctagcatgggcgacaagagcgaaacttcatctc
i cerAty1.NW_012001495v1   C 0 I 1
s chlSab2.chr17             28354792 206 -  71996105 gttcgaggccagcctgaccaacatggagaaaccctgtctctactaaaaatacaaaattagctaggcttggtggcgcacacctgtaatcccagctactcaggagcctgaggaaggagaattgcttgaacctgggaggcggatgttgcggtgagccacgatcacgccattgcactccagcatgggcaacaagaacgaaacttcatctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2040724 206 +   2316924 gttcgaggccagcctgaccaacatggagaaaccctgtctctactaaaaatacaaaattagctaggcatggtggcgcacacctgtaatcccagctactcaggagcctgaggaaggagaattgcttgaacccgggaggcggatgttgcggtgagccgagatcacgccattgcactctagcatgggcgacaagagcgaaacttcatctc
i manLeu1.NW_012104165v1   C 0 I 7623
s colAng1.NW_012115566v1     1918925 206 -   3067355 gttcgaggccagcctgaccaacatggagaaactctgtctctactaaaaatacaaaattagctaggcgtggtggtgcacacctgtaatcccagctactcaggagcctgaggaaggagaattgcttgaacctgggaggcggatgttgcagtgagctgagatcacaccattgcactccagcatgagtgacaagagcaaaacttcatctc
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e canFam3.chr35             25929589  93 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I

a score=801558.000000
s hg38.chr6_GL000254v2_alt    195541 154 +   4827813 gatt-------aa-aaaaaaaaaaagtaaaagaaaacaatttgacaatcactaaaaaaatttaaatgcactcactcttagaaccttctactctgcttctctcccatctggacagagatgtttgattatacaaggattgccattacagcattgtttggatttg
s panTro5.chr6              29183007 157 + 175400573 gatt--aa--aaa-aaaaaaaaaaagtaaaagaaaacaatttgacaatcactaaaaaaatttaaatgcactcactcttagaaccttctactctgcctctctcccatctggacagagatgtttgattatacaaggattgccattacagcattgtttggatttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29417047 156 + 173848474 gatt---a--aaa-aaaaaaaaaaagtaaaagaaaacaatttgacaatcactaaaaaaatttaaatgcactcactcttagaaccttctactctgcctctctcccatctggacagagatgtttgattatacaaggattgccattacagcattgtttggatttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5217717 156 +   6154872 gatt---a--aaa-aaaaaaaaaaagtaaaagaaaacaatttgacaatcactaaaaaaatttaaatgcactcactcttagaaccttctactctgcttctctcccatctggacacagatgtttgattatacaaggattaccattacagcattgtttggatttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74219798 158 + 122973662 gattaaaa--gaa-aaaaaaaaagaaaaaaaaaaaacaatttgacaatcactaaaaaaatttaaatgcacacactcttagaaccttctactctgcttctctcccatctggacagagatgtttgattatacaaggattgccattacagcatta-ttggatttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29397324 148 + 172585720 --------------aaaaaaaaaaaaaaaaagaaagcaatttgacaatcattaaaaaattttaaatgcacacactcttagaactttctactctgcttctctcccatctggacagaggtgtttgattatacaaggattgccattacagcattgtttggatttg
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              29058206 148 - 170955103 --------------aaaaaaaaaaaaaaaaagaaagcaatttgacaatcattaaaaaattttaaatgcacacactcttagaactttctactctgcttctctcccatctggacagaggtgtttgattatacaaggattgccattacagcattgtttggatttg
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     2047298 152 -   2996164 -------a--aaa-aaaaaaaaaaaaaaaaagaaagcaatttgacaatcattaaaaaattttaaatgcacacactcttagaactttctactctgcttctctcccatctggacagaggtgtttgattatacaaggattgccattacagcattgtttggatttg
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012001495v1     1915106 153 -   2157725 -------a--aaagaaaaaaaaaaaaagaaagaaagcaatttgacagtcactaaaaaattttaaatgcacacactcttagaaccttctactctgcttctctcctatctggacagagatgtttgattatacaaggattgccatgacagcattgtttggatttg
i cerAty1.NW_012001495v1   I 1 C 0
s chlSab2.chr17             28354998 151 -  71996105 ----------aaa-aaaaaaaaaaaaagaaagaaagcaatttgacaatcactaaaaaaatttaaatgcacacactcttagaaacttctactctgcttctctcccctctggacagagatgtttgattatacaaggattgccattacagcattgtttggatttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2048553 154 +   2316924 -------gaaaaa-aaaaaaaaaaaaagaaagaaagcaatttgacaatcactaaaaaattttaaatgcacacactcttagaaccttctactctgcttctctcccatctggacagagatgtttgattatacaaggattgccattacagcattgtttggatttg
i manLeu1.NW_012104165v1   I 7623 C 0
s colAng1.NW_012115566v1     1919131 145 -   3067355 -----------------aaaaaaaaagaaaagaaagcaatttgataatcacaaaaaaattttaaatgcacacactcttagaaccttctactctgcttctctcccgtctggacagagatgtttgattatataaggattgccattacagcattgtttggatttg
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e canFam3.chr35             25929589  93 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I

a score=601780.000000
s hg38.chr6_GL000254v2_alt    195695 96 +   4827813 taaaatactgggaccaacgtcaatatgctccaacaggggataagttaatgaaaatattatgcaggtgtacaatgaaatgctatgcagtttc-caaaa
s panTro5.chr6              29183164 96 + 175400573 taaaatactgggaccaacatcaatatgctccaacaggggataagttaatgaaaatattatgcaggtgtacaatgaaatgctatgcagtttc-caaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29417203 96 + 173848474 taaaatactgggaccaacatcaatatgctccaacaggggataagttaatgaaaatattatgcaggtgtacaatgaaatgctatgcagtttc-caaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5217873 95 +   6154872 taaaatactgggaccaacatcaata-gctccaacaggggataagttaatgaaaatattatgcaggtgtacaatgaaatgctatgcagtttc-caaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74219956 96 + 122973662 taaaatactgggaccaacatcaatatgctccaacaggggataagttaatgaaaatattatgcaggtgtacaatgaaatgctatgcagtttc-caaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29397472 96 + 172585720 taaaatactgggaccaacatcaatatgctccaacaggggataagataataaaaatattatgcaggtgtacaatgaaatgctatggagtttc-caaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29058354 96 - 170955103 taaaatactgggaccaacatcaatatgctccaacaggggataagataataaaaatattatgcaggtgtacaatgaaatgctatggagTTTC-Caaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2047450 96 -   2996164 taaaatactgggaccaacatcaatatgctccaacaggggataagatagtaaaaatattatgcaggtgtacaatgaaatgctatggagTTTC-Caaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1915259 96 -   2157725 taaaatactgggaccaacatcaatatgctccaataggggataaggtaatgaaaatattatgcaggtgtacaatgaaatgctatgcagTTTC-Caaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28355149 97 -  71996105 taaaatcctgggactaacatcaatatgctccaacaggggataaggtaatgaaaatattatgcaggtgtacaatgaaatgctatgcagTTTCAAaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2048707 96 +   2316924 taaaatactgggaccaacatcaatatgctccaataggggataaggtaatgaaaatattatgcaggtgtacaatgaaatgctatgcagtttc-caaaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1919276 96 -   3067355 taaaatactgggaccaacatcaatatgctccaacaggggataatttaatgaaaatattatgcaggtgtacaatgaaatgctatgcagtttc-caaaa
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25929682 94 +  26524999 taaaatactggaactaacagaagcatgcttc--caggggacaggttgttgaaaatactgtgtgggcatgccatggaatagtatgtcagtac-caaaa
i canFam3.chr35            I 93 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I

a score=114480.000000
s hg38.chr6_GL000254v2_alt    195791 25 +   4827813 acaaaaacaaagaagaaggag---------------------------------------------------------gagg
s panTro5.chr6              29183260 25 + 175400573 acaaaaacaaagaagaaggag---------------------------------------------------------gagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29417299 24 + 173848474 ac-aaaacaaagaagaaggag---------------------------------------------------------gagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5217968 25 +   6154872 acaaaaacaaagaagaaggag---------------------------------------------------------gagg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74220052 82 + 122973662 acaaaaacaaagaaggaggagggagaagaagaagaggaagaggaagaggaggaggaggaggaagaggaagaagatgatgaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29397568 25 + 172585720 acaaaagcaaagaataaggag---------------------------------------------------------gagg
i rheMac8.chr4             C 0 I 3
s macFas5.chr4              29058450 25 - 170955103 acaaaagcaaagaataaggag---------------------------------------------------------gagg
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1     2047546 25 -   2996164 acaaaagcaaagaataaggag---------------------------------------------------------gagg
i macNem1.NW_012011356v1   C 0 I 1512
s cerAty1.NW_012001495v1     1915355 25 -   2157725 acaaaagcaaagaagaaggag---------------------------------------------------------gagg
i cerAty1.NW_012001495v1   C 0 I 3
s chlSab2.chr17             28355246 25 -  71996105 acaaaagcaaagaagaaggag---------------------------------------------------------gagg
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012104165v1     2048803 25 +   2316924 acaaaagcaaagaagaaggag---------------------------------------------------------gagg
i manLeu1.NW_012104165v1   C 0 I 3
s colAng1.NW_012115566v1     1919372 25 -   3067355 acaaaagcaaagaagaaggag---------------------------------------------------------gagg
i colAng1.NW_012115566v1   C 0 I 3
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e canFam3.chr35             25929776  0 +  26524999 C
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I

a score=281647.000000
s hg38.chr6_GL000254v2_alt    195816 82 +   4827813 aggaagaagaagaggaagaggaggtggaggaggaggaagaagaagaagaagaa--------------ggaggaagaagaagaagaggaaga--agaag
s panTro5.chr6              29183285 78 + 175400573 aggaagaagaagaggaagagga---ggaggaggaagaagatgatgaagaagaa---------------gaggaggaagaagaagaggaaga--agaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29417323 84 + 173848474 aggaagaagaagaggaagaggaggaggaggaagaagaagatgatgaagaagagga------------ggaagaagaagaagaagaggaaga--agaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5217993 96 +   6154872 aggaagaagaagatgaagaagaagaagaagaggaagaaggagatgaagaagaagaagaggaagaaggagatgaagaagaagaagaagagga--agaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74220134 95 + 122973662 aagaagaagaagaagaagaggaggaggagga-gaaggagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaga--agaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29397596 85 + 172585720 aggaagaagaagaggaagaggaagtggaggaggaagaagaaaagaagaaaggagaa-----------gaacaaaagagaagaagaaaaaga--aggag
i rheMac8.chr4             I 3 C 0
s macFas5.chr4              29058478 85 - 170955103 aggaagaagaagaggaagaggaagtggaggaggaagaagaaaagaagaaaggagaa-----------gaacaaaagagaagaagaaaaaga--aggag
i macFas5.chr4             I 3 C 0
s cerAty1.NW_012001495v1     1915383 85 -   2157725 aggaagaagaagaggaagaggaagaggaggaggaagaagaaaagaagaaaggagaa-----------gaagaaaagagaagaagaaaaaga--aggaa
i cerAty1.NW_012001495v1   I 3 C 0
s chlSab2.chr17             28355273 76 -  71996105 -----------gaggaagaggaagaggaggaggaagaagaaaagaagaaaggagaa-----------gaacaaaagagaagaagaaaaagaagaggag
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012104165v1     2048831 85 +   2316924 aggaagaagaagaggaagaggaagaggaggaggaagaagaaaagaagaaaggagaa-----------gaagaaaagagaagaagaaaaaga--aggaa
i manLeu1.NW_012104165v1   I 3 C 0
s colAng1.NW_012115566v1     1919400 84 -   3067355 aggaggaagaagaggaagaggaagaggaggaggaagaagaagaaaagaaaggagaa-----------gaa-aaaagagaagaagaaaaaga--aggag
i colAng1.NW_012115566v1   I 3 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e canFam3.chr35             25929776  0 +  26524999 C
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e macNem1.NW_012011356v1     2047571 1512 -   2996164 I

a score=174128.000000
s hg38.chr6_GL000254v2_alt    195898 41 +   4827813 gagaagaagaa------aaagaagaaATAAT---CTAATAGGGAAAGGTG
s panTro5.chr6              29183363 44 + 175400573 gagaagaagaa------aaagaagaaATAATCTACTAATAGGGAAAGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29417407 44 + 173848474 gagaagaagaa------aaagaagaaATAATCTACTAATAGGGAAAGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5218089 43 +   6154872 gagaagaag-a------aaagaagaaATCATCTACTAATAGGGAAAGCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74220229 44 + 122973662 aagaagaagaa------gaagaagaaATAATCTACTAATAGGGAAAGCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29397681 50 + 172585720 gaggaggaggaggaggagaagaagTAATAATCTACTAATAGGGAAAGCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29058563 50 - 170955103 gaggaggaggaggaggcgaagaagTAATAATCTACTAATAGGGAAAGCTG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1915468 44 -   2157725 gaggaggagaa------gaagaaATAATAATCTACTAATAGGGAAAGCTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28355349 44 -  71996105 gaggaggagaa------gaagaaATAATAATCTACTAATAGGGAAAGCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2048916 44 +   2316924 gaggaggagaa------gaagaaATAATAATCTACTAATAGGGAAAGCTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1919484 47 -   3067355 gaagaggagaagga---gaagaaATAATAATCTACTAATAGGGAAATCTG
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25929776 39 +  26524999 ----ggaatga------gtcaaatctat-acatactaatatggaaagatg
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      996259 1279 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e macNem1.NW_012011356v1     2047571 1512 -   2996164 I

a score=1405460.000000
s hg38.chr6_GL000254v2_alt    195939 232 +   4827813 TCTGAGATTTATTTACTCattaatttattcaacaaatgtttgttgagtgtcaacta-tgtgccag----tcttctagattccaggacactgtgtggaacaaaacagacaaggttgctggggtcatggaattactttctagagggaaagttggatgataagcaaaccaagcaataaacac--atggtatgaaacatgccataaagtggaatgaatcagaatatggaagatgaagagtgat-
s panTro5.chr6              29183407 232 + 175400573 TCTGAGATTTATTTACTCattaatttattcaacaaatgtttgttgagtgtcaacta-tgtgccag----tcttctagattccaggacactgtgtggaacaaaacagacaaggttgctggggtcatggaattactttctagagggaaagatggatgataagcaaaccaagcaataaacac--atggtatgaaacatgccataaagtgaaatgaatcagaatatggaagatgaagagtgat-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29417451 232 + 173848474 TCTGAGATTTATTTACTCattaatttattcaacaaatgttcgttgagtgtcaacta-tgtgccag----tcttctagattccaggacactgtgtggaacaaaacagacaaggttgctggggtcatggaattactttctagagggaaagatggatgataagcaaaccaagcaataaacac--atggtatgaaacatgccataaagtggaatgaatcagaatatggaagatgaagagtgat-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5218132 232 +   6154872 TCTGAGATTTATTTACTCGttaatttattcaacaaatgtttgttgagtgtcaacta-tgtgccag----tcttctagattccaggacactgtgtggaacaaaacagacaaggttgctggtgtcatggaattactttctagagggaaagatggatgataagcaaaccaagcaataaacac--atggtatgaaacatgccataaagtggaatgaatcagaatatggaagatgaagagtgat-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74220273 231 + 122973662 TCTGACATTTATTTACTCattaatttattcaacaaatgtttgttgagtgtcaatta-tgtgccag----tcttctagattccaggacactgtgtggaataaaacagacaaggttgctggggtcat-gaattactttctagagggaaagatggatgataagcacaccaagcaataaacac--gtggtatgaagcatgccataaagtggaatgaatcagaatatggaagatgaagagtgat-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29397731 232 + 172585720 TCTGAGATTTATTTACTCattaatttattgaacaaatgtttgttgagtctcaacta-tgtgccag----tcttttagattccaggacactgtgtggaacaaaacagacaaggttgctggggtcatggaattactttctagaggaaaagatggatgataagcaaactaagcaataaatac--atggtatgaaacatgccataaagtgaaatgaatcagaatatggaagatgaagagtgat-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29058613 232 - 170955103 TCTGAGATTTATTTACTCGttaatttattgaacaaatgtttgttgagtctcaacta-tgtgccag----tcttttagattccaggacactgtgtggaacaaaacagacaaggttgctggggtcatggaattactttctagaggaaaagatggatgataagcaaactaagcaataaatac--atggtatgaaacatgccataaagtgaaatgaatcagaatatggaagatgaagagtgat-
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1915512 232 -   2157725 TCTGAGATTTATTTACTCattaatttattcaacaaatgtttgttgagtcttaacta-tgtgccag----tcttctacattccaggacactgtgtggaacaaaacagacaaagttgctggggtcatggaattactttctagagggaaaaacggatgataagcaaaccaagcaataagtac--atggtatgaaacatgccataaagtgaaatgaatcagaatatggaagatgaagagtgat-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28355393 232 -  71996105 TCTGAGATTTATTTACTCattaatttattgaacaaatgtttgttgagtctcaacta-tgtgccag----tcttctagattccaggacactgtgtggaacaaaacagacaaggttgctggggtcatggaattactttctagagggaaaaatggatgataagcaaaccaagcaataaatac--atggtatgaaacatgccataaagtgaaatgaatcagaatatggaagatgaagagtgat-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2048960 228 +   2316924 TCTGAGATTTATTTACTCattaatttattcaacaaatgtttgttgagtcttaacta-tgtgccag----tcttctacattccaggacactgtgtggaacaaa----acaaagttgctggggtcatggaattactttctagagggaaagacggatgataagcaaaccaagcaataaatac--atggtatgaaacatgccataaagtgaaatgaatcagaatatggaagatgaagagtgat-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1919531 232 -   3067355 TCTGAGATTTATTTACTCattaatttattcaacaaatgtttgttgagtctcaacta-tgtgccag----tcttctagattccaggacactgtgtggaacaaaacagacaaggttactggggtcatggaattactttctagagggaaagatggatgataagcaaaccaagcaataaatac--atggtatgaaacgtgccataaagtgaaatgaatcagaatatggaagatgaagagtgat-
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012147953v1      997538 235 -   3516910 TCTGAGATTTATTTATTCattaatttattcaacaaacatttgttgagtgtcaactattgtgctag----tcttctaggcttcaggacactgtacaaaacaaagtggacaaagttcctaggctcctggagttacttattagagggagagatggacaataagcaaatcaagaaatatatattaatagtatgaatgatgccatgaggggaaaagaatcaggatatggaggatgaagactgat-
i proCoq1.NW_012147953v1   I 1279 I 31
s canFam3.chr35             25929815 228 +  26524999 tctgagaGCTTTTCATTGattca-ttattcagcaagtgtttgttgactgtccagta-tatgctagcctctcttctaaactccaggatatggcagggaacaaaacag---aggt--ctggacacgtggagttgctttctagagggaaagatggacgataagcaaatcaagaaatagatgg--atagtatgagagatgccatga---gaaatgaatcccattgtggaaagtggaaagtgatt
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e macNem1.NW_012011356v1     2047571 1512 -   2996164 I

a score=181896.000000
s hg38.chr6_GL000254v2_alt    196171 35 +   4827813 ggttattactttatattgggtcatcagggtggaat
s panTro5.chr6              29183639 35 + 175400573 ggttattactttatattgggtcatcagggtggaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29417683 35 + 173848474 ggttattactttatattgggtcatcagggtggaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5218364 35 +   6154872 ggttattactttatattgggtcatcagggtggaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74220504 35 + 122973662 ggttattactttatattgggtcatcagggtggaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29397963 35 + 172585720 ggttattactttatattgggtcatcagagtggaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29058845 35 - 170955103 ggttattactttatattgggtcatcagagtggaat
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1915744 35 -   2157725 ggttattactttatattgggtcatcagagtggaat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28355625 35 -  71996105 ggttattactttatattgggtcatcagagtggaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2049188 35 +   2316924 ggttattactttatattgggtcatcagagtggaat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1919763 35 -   3067355 ggttattactttatattgagtcatcagagtggaat
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25930043 33 +  26524999 gggtgttactgtata-tgggcctccaggggaggt-
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      997773 31 -   3516910 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e macNem1.NW_012011356v1     2047571 1512 -   2996164 I

a score=699125.000000
s hg38.chr6_GL000254v2_alt    196206 110 +   4827813 ctctctgatgaggtagcCAAACAGCTGCTGCAGTTTAGAGTCTCAAATTTGCATGTCACtgggcatttatctcagagaaataaaaatgtttgttcacccaagaatctgca
s panTro5.chr6              29183674 110 + 175400573 ctctctgataaggtagcCAAACAGCTGCTGCAGTTTAGAGTCTCAAATTTGCATGTCACtgggcatttatctcagagaaataaaaatgtttgttcacccaagaatctgca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29417718 110 + 173848474 ctctctgataaggtagcCAAACAGCTGCTGCAGTTTAGAGTCTCAAATTTGCATGTCACtgggcatttatctcagagaaataaaaatgtttgttcacccaagaatctgca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5218399 110 +   6154872 ctctctgatgaggtagcCAAACAGCTGCTGCAGTTTAGAGTCTCAAATTTGCATGTCACtgggcatttatctcagagaaataaaaatgtttgttcacccaaggatctgca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74220539 110 + 122973662 ctctctgatgaggtagcCAAACAGCTGCTGCAGTTTAGAGTCTCAAATTTGCATGTCACGgggcatttatctcagagaaataaaaatgtttgttcacccaagaatctgca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29397998 110 + 172585720 ctctctgatgaggtagcCAAACAGCTGCTGCAGTGTAGAGTCTCAAGTGTGCGTGTCACtgggcatttatctcagagaaataaaaatgtttgttcacccaagaatctgca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29058880 110 - 170955103 ctctctgatgaggtagcCAAACAGCTGCTGCAGTGTAGAGTCTCAAGTGTGCGTGTCACtgggcatttatctcagagaaataaaaatgtttgttcacccaagaatctgca
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1915779 110 -   2157725 ctctctgatgaggtagcCAAACAGCTGCTGCAGTGTAGAGTCTCAAGTATGCATGTCACtgggcatttatctcagagaaataaaaatgtttgttcacccaagaatctgca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28355660 110 -  71996105 ctctctgatgaggtagcCAAACAGCTGCTGCAGTGTAGAGTCTCAAGTATGCATGTCACtgggcatttatctcagagaaataaaaatgtttgttcacccaagaatctgca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2049223 106 +   2316924 ctctctgatgaggtagcCAAACAGCTGCTGCAGTGTAGAGTCTCAAGTATGAATGTCACtgggcatttatctcagagaaataaaaa----tgttcacccaagaatctgca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1919798 110 -   3067355 ctctctgatgaggtagcCAAACAGCTGCTGCAGTGTAGAGTCTCAAGTATGCCTGTCACtgggcatttatctcagagaaataaaaatgtttgttcacctaagaatctgca
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012147953v1      997804 110 -   3516910 cactctgatgaggtagcCAAATAGCTGCTGCAGTTTTGAGTTTCAAATTTGCATGTCAttggacatttatcccagagaaataaaaacttatgttcacccaaaaatctgca
i proCoq1.NW_012147953v1   I 31 C 0
s canFam3.chr35             25930076 109 +  26524999 ttctctgatgaggtCGCCAAATGGCTGCTGGGGTTTTGACTCTCAAATGTATATGTCAttgggcattt-tcccagagaaatggaaacttacattcacacaaaaatctgca
i canFam3.chr35            C 0 I 4396
e dasNov3.JH561790             80168 9105 -    302817 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e macNem1.NW_012011356v1     2047571 1512 -   2996164 I

a score=1012888.000000
s hg38.chr6_GL000254v2_alt    196316 186 +   4827813 caaaacattgttcgtaatagccaagcctagaaataattcaaatgtcctcgaatggtgaagagttaaaca----gtggcacatccatattatgaaatactacccagagataaaaatgaatgaactactgagataggcagcaacttggatagatctcaaggaaattatgctgagtgagaaaagtcaatctc---a
s panTro5.chr6              29183784 186 + 175400573 caaaacattgttcgtaatagccaagcctagaaataattcaaatgtcctcgaatggtgaagagttaaaca----gtggcacatccatactatgaaatactacccagagataaaaatgaatgaactactgagataggcagcaacttggatagatctcaaggaaattatgctgagtgagaaaagtcaatctc---a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29417828 186 + 173848474 caaaatattgttcgtaatagccaagcctagaaataattcaaatgtcctcgaatggtgaagagttaaaca----gtggcacatccatattatgaaatactacccagagataaaaatgaatgaactactgagataggcagcaacttggatagatctcaaggaaattatgctgagtgagaaaagtcaatctc---a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5218509 186 +   6154872 caaaacattgttcgtaatagccaagcctagaaataattcaaatgtcctcgaatggtgaagagttaaaca----gtggcacatccatattatgaaatactacccagagataaaaatgaatgaactactgagataggcagcaacttggatagatctcaaggaaattacgctgagtgagaaaagtcagcctc---a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74220649 182 + 122973662 caaaacattgttcgtaatagccaagcctagaaataattcaaatgtcctcgaatggtgaagagttaaaca----gtggcacatccatatcatgaaatactacccagagataaa----aatgaactactgagataggcagcaacttggagagatctcagggaaattatgctgagtaagaaaagtcaatctc---a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29398108 189 + 172585720 caaaacattgttcataatagccaagcctagaaagaattcaaatgtcctcgaacggtgaagagttaaaca----gtggcacatccatattgtgaaatgctacccagcgataaaaatgaatgaactactgagataggcaacaacttggatagatctcaagggaattatgctgagtaagaagagtcaatctcagaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29058990 189 - 170955103 caaaacattgttcataatagccaagcctagaaagaattcaaatgtcctcgaacggtgaagagttaaaca----gtggcacatccatattgtgaaatactacccagcgataaaaatgaatgaactactgagataggcaacaacttggatagatctcaagggaattatgctgagtaagaagagtcaatctcagaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1915889 189 -   2157725 caaaacattgttcataatagccaagcctagaaagaattcaaatgtcctcgaacggtgaagagttaaaca----gtgacacatccatattgtgaaatactacccagcgataaaaatgaatgaactactgagataggcaacaacttggatagatctcaagataattatgctgagtaagaagagtcaatctcagaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28355770 189 -  71996105 caaaacattgttcataatagccaagcctagaaagaattcaaatgtcctcgaacagtgaagagttaaaca----gtggcacatccatattgtgaaatactactcagcgataaaaatgaatgaactactgaggtaggcaacaacttggatagatctcaagggaattatgctgagttagaagagtcaatctcagaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2049329 189 +   2316924 caaaacattgttcataatagccaagcctagaaagaattcaaatgtcctcgaacggtgaagagttaaaca----gtgacacattcatattgtgaaatactacccagcgataaaaatgaatgaactactgagataggcaacaacttggatagatctcaagagaattatgctgagtaagaagagtcaatctcagaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1919908 189 -   3067355 caaaacattgttcataatagccaagcctagaaagaattcaaatgtcctcgaacggtgaagagttaaaca----gtggcacatccatattgtgaaatactacccagcgataaaaatgaatgaactactgagataggcaacaacttggatagatctcaagggagttatgctgagtaagaagagtcaatctcagaa
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012147953v1      997914 190 -   3516910 cagagcattattcgtaatagtcaagcctggaaacaacccaaacatccttgaatggtgaatgattaaacacactgtggcacatccatatcatggaatactactgagcaataaaaataaatgaactattgaagcaagcaacaatttggataaatctcaagggaattatactgagtaaaaaaagtcaatctc---a
i proCoq1.NW_012147953v1   C 0 I 380
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25930185 4396 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e macNem1.NW_012011356v1     2047571 1512 -   2996164 I

a score=313011.000000
s hg38.chr6_GL000254v2_alt    196502 102 +   4827813 ggttgtgatttgtatgattccattaataacatttatttatt---------tatttatttatttattta-tttattta-----tttatttatttttgggaaagagtcccactgtgtta
s panTro5.chr6              29183970  78 + 175400573 ggttgtgatttgtatgattccattaataac---------------------------------attta-tttattta-----tttatttatttttgggaaagagtcccactgtgtta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29418014  86 + 173848474 ggttgtgatttgtatgattccattaataac-------------------------atttatttattta-tttattta-----tttatttatttttgggaaagagtcccactgtgtta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5218695 102 +   6154872 ggttgtgatttgtatgattccattaataacatttatttatt---------tatttatttatttattta-tttattta-----tttatttatttttgggaaagagtcccactgtgtta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74220831 107 + 122973662 ggttgtgatttgtatgattccattaataacatttatttatt---------tatttatttatttattta-tttatttatttattttatttatttttgagaaagagtctcactgtgtta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29398297  83 + 172585720 ggttatgatttgtacgattccattaataacatttatttact-----------------------tata-tttattta-----tttatttatt-----gagacagttttactgtgttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29059179  83 - 170955103 ggttatgatttgtacgattccattaataacatttatttact-----------------------tata-tttattta-----tttatttatt-----gagacagttttactgtgttg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1916078  83 -   2157725 ggttatgatttgtatgattccattaataacatttatttact-----------------------tata-tttattta-----tttatttatt-----gagacagtttcactgtgttg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28355959 106 -  71996105 ggttatgatttgtatgattccattaataacatttatttactttatttatttatttatttatttattta-tttattta-----tttatttttt-----gagacagcttcactgtgttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2049518 103 +   2316924 ggttatgatttgtatgattccattaataacatttatttact---tttatttatttatttatttattta-tttattta-----tttatttatt-----gagacagtttcactgtgttg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1920097  99 -   3067355 ggttatgatttgtatgattccattaataacatttatttact-------tatttttatttatttatttactttattta-----tttattt-tt-----gagacagtttcactgtgttg
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      998104 380 -   3516910 I
e canFam3.chr35             25930185 4396 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I
e macNem1.NW_012011356v1     2047571 1512 -   2996164 I

a score=1908904.000000
s hg38.chr6_GL000254v2_alt    196604 364 +   4827813 ctcaggctggagtgcagtgggacaatctcggctcactgcagcctctgccttccgggttcaagtgattctcctgtgtcag--cctccggagtagctaggat-taaggcatgtaccaccatgcccagcta---ttt-ttttttttttgta---tttttagtaaacacgggttttcaccatattggcca-ggctagtctccaactcttgacctcaaatgatccacctacctcgacttc------ccaaagtgctggaattacaggagtgagccgctgtggccagcccacaacattctcga-aatgataaaa---ttatagagatagagagcagatgagtagttgctaggcattagggagagagaagggaaggaggtgtctgtggctat
s panTro5.chr6              29184048 366 + 175400573 ctcaggctggagtgcagtgggacaatctcggctcactgcagcctctgccttccgggttcaagtgattctcctgtgtcag--cctccggagtagctaggat-taaggcatgtaccaccatgcccagcta-ttttt-ttttttttttgta---tttttagtaaacacgggttttcaccatattggcca-ggctagtctccaactcttgacctcaaatgatccacctgcctcgacttc------ccaaagtgctggaattacaggagtgagccgctgtggccagcccacaacattctcga-aatgataaaa---ttatagagatagagagcagatgagtagttgctaggcattagggagagagaagggaaggaggtgtctgtggctaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29418100 362 + 173848474 ctcaggctggagtgcagtgggacaatctcggctcactgcagcctctgccttccgggttcaagtgattctcctgtgtcag--cctccggagtagctaggat-taaggcatgtaccaccatgcccagc-----tta-tttttttttgtta---tttttagtaaacacgggttttcaccatattggcca-ggctagtctccaactcttgacctcaaatgatccacctgcctcgacttc------ccaaagtgctggaattacaggagtgagccgctgtggccagcccacaacattctcga-aatgataaaa---ttatagagatagagagcagatgagtagttgctaggcattagggagagagaagggaaggaggtgtctgtggctaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5218797 367 +   6154872 ctcaggctggagtgcagtcggacaatcttggctcactgcagcctctgccttccgggttcaagtgattctcctgtgtcag--cctccggagtagctaggat-taaggcatgtaccaccatgcccagctatttttt-ttttttttttgta---tttttagtaaacacaggttttcaccatattggcca-ggctagtctccaactcttgacctcaaatgatccacctgcctcgacttc------ccaaagtgctggaattacaggagtgagccgctgtggccagcccacaacattctcga-aatgataaaa---ttatagagatggagagcagatgagtagttgctaggcattagggagagagaagggaaggaggtgtctgtggctat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74220938 366 + 122973662 cttaggctggagtgcactgggacaatctcggctcactgcagcctctgcctcccggcttcaagcgattctcctgtgtcag--cctccggagtggctaggat-taaggcatgtaccaccatgtccagcta-ttttt-ttttttttttgta---tttttagttaacacgggttttcaccatgttggcca-ggctagtctccaactcttgacctcaaatgatccacctgcctcggcttc------ccaaagtgctggtattacaggagtgagccactgtggccagcccacaacattcttga-aataataaaa---ttacagagatagagagcagatgagtagttgctaggcattagggagagagaagggaaggaggtgtctgtggctat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29398380 358 + 172585720 ctcaggctggagtgcagcaggacaatctcgactcactgcagcctctgcctcccaggttcaagtgattctcctgtgtcag--cctcccgagtagctaggat-taaggcatgcaccaccatgcccagcta---att-tttttttttggta---tttttagtaaacacaggttttcaccatgttggcca-ggctagtgtccaactcttgacctcaaatgatccacctg------cttc------ccaaagtgctgggattacaggagtgagccactgtggccagcccataacattcttga-aatgacaaaa---ttatagagatagagaacagatgagtagttgctaggcattagggaaagagaagggaaggaggtgtctgtggctat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29059262 356 - 170955103 ctcaggctggagtgcagcaggacaatctcgactcactgcagcctctgcctcccaggttcaagtgattctcctgtgtcag--cctcccgagtagctaggat-taaggcatgcaccaccatgcccagcta---a---tttttttttggta---tttttagtaaacacaggttttcaccatgttggcca-ggctagtgtccaactcttgacctcaaatgatccacctg------cttc------ccaaagtgctgggattacaggagtgagccactgtggccagcccataacattcttga-aatgacaaaa---ttatagagatagagaacagatgagtagttgctaggcattagggaaagagaagggaaggaggtgtctgtggctat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2049083 365 -   2996164 ctcaggctggagtgcagcaggacaatctcgactcactgcag-ctctgcctcccaggttcaagtgattctcctgtggcaagcctccccgagtagctaggatgttaagcatgcacc-ccatgaccagcta---atggtttttttttggtaattcttttagtaaacagcaggtttcaccatgttcgccagggctagtgtccactccttgacccacaatgatccacccg-------tcc------ccaaagtgctgggattacaggagtgagccactgtgGGCCGCCCA-aacattcttgacaatgacgaaacatttatagagatagaggaacagtgagtagttgctaggcattagggaaagagaagggaaggaggtgtc-gtggctat
i macNem1.NW_012011356v1   I 1512 C 0
s cerAty1.NW_012001495v1     1916161 361 -   2157725 ctcaggctggagtgcagcgggacaatctcgactcactgcagcctctgcctcccaggttcaagtgattctcttgtgtcg---cctctcgagtagctaggat-taaggcatgcaccaccatgcccagcta---a---tttttttttggta---tttttagtaaacacaggttttcaccatgttggcca-ggctagtgtccaactcttaacctcaaatgatccacccgcctcagcttc------ccaaagtgctgggattacaggagtgagccactgtggccagcccataacattcttga-aatgacaaaa---ttatagagatagagaacagatgagtagttgctaggcattagggaaagagaagggaaggaggtgtccgtggctat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28356065 356 -  71996105 cttaggctggagtgcagcaggaaaatctcgactcactgcagcctctgcctcccaggttcaagtgattctcctgtgtcag--cctcccgagtagctaggat-taaggcatgcaccaccatgcccagcta---a---tttttttttggta---tttttagtaaacacaggttttcaccatgttggcca-ggctagtgtccaactcttgacctcaaatgatccacccg------cttc------ccaaagtgctgggattacaggagtgagccactgtggccagcccataacattcttga-aatgacaaaa---ttatagagatagagaacagatgagtagttgctaggcattagggaaagagaagggcaggaggtgtctgtggctat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2049621 363 +   2316924 ctcaggctggagtgcagcgggacaatctcgactcactgcagcctctgcctcccaggttcaagtgattctcttgtgtcag--cctctcgagtagctaggat-taaggcatgcaccaccatgcccagcta---at--tttttttttggta---tttttagtaaacacaggttttcaccatgttggcca-ggctagtgtccaactcttgacctcaaatgatccacccg------cctcggctttccaaagtgctgggattacaggagtgagccactgtggccagcccataacattcttga-aatgacaaaa---ttatagagatagagaacagatgagtagttgctaggcattagggaaagagaagggaaggaggtgtccgtggctat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1920196 360 -   3067355 ctcaggctggagtgcagcgggacaatctcaactcactgcagcctctgcctcctgtgttcaagtgattctgctgt--cag--cctcccaagtagctaggat-taaggcatgcaccaccatgcccagcta---a---tttttttttggta---tttttagtaaacacaggttttcaccatgttggcca-ggctagtgtccaactcttgacctcaaatgatccacccgcctcggcttc------ccaaagtgctgggattacaggagtgagccactgtggccagcccataacgttcttga-aatgacaaaa---ttatagagatagagaacaaatgagtagttgctaggcattagggaaagagaagggaaggaggtgtctgtggctat
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      998104 380 -   3516910 I
e canFam3.chr35             25930185 4396 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I
e calJac3.chr4             171440018 985 - 171630274 I

a score=93562.000000
s hg38.chr6_GL000254v2_alt    196968 16 +   4827813 aaaaggg--taccctgag
s panTro5.chr6              29184414 16 + 175400573 aaaaggg--taccctgag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29418462 16 + 173848474 aaaaagg--taccctgag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5219164 16 +   6154872 aaaaggg--taccctgag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74221304 16 + 122973662 aaaaggt--taccctgag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29398738 16 + 172585720 aaaaggg--taccctgag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29059618 16 - 170955103 aaaaggg--taccctgag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2049448 18 -   2996164 aaaaagggttaccctgag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1916522 16 -   2157725 aaaagag--taccctgag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28356421 16 -  71996105 aaaaggg--taccgtgag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2049984 16 +   2316924 aaaagag--taccctgag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1920556 16 -   3067355 aaaaggg--taccctgag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171441003 16 - 171630274 aaagagg--tagtgtgag
i calJac3.chr4             I 985 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      998104 380 -   3516910 I
e canFam3.chr35             25930185 4396 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      194456 424 -    285216 I
e cebCap1.NW_016108108v1      263026 468 -    373274 I

a score=1863496.000000
s hg38.chr6_GL000254v2_alt    196984 231 +   4827813 ggatccttgtgatg-gaacagttttgtatcttg-actgtaatg-tt----gttcctatgtgatatttacacatgcaataaaattgtatagaactaaacacacacaaacagat---gagtgtatgtaaaaatggtgaaatctgagtaagattggtggattttatcaaa-aataatttcctggtgtgatattgtactatatttatgcaa--gat-gttaccattgggagaaactgagtgaag-ggtat
s panTro5.chr6              29184430 231 + 175400573 ggatccttgtgatg-gaacagttttgtatcttg-actgtaatg-tt----gttcctatgtgatatttacacatgcaataaaattgtatagaactaaacacacaccaacagat---gagtgtatgtaaaaatggtgaaatctgagtaagattggtggattttatcaaa-aataatttcctggtgtgatattgtactatatttatgcaa--gat-gttaccattgggagaaactgagtgaag-ggtat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29418478 231 + 173848474 ggatccttgtgatg-gaacagttttgtatcttg-actgtaatg-tt----gttcctatgtgatatttacacatgcaataaaattgtatagaactaaacacacaccaacagat---gagtgtatgtaaaaatggtgaaatctgagtaagattggtggattttatcaaa-aataatttcctggtgtgatattgtactgtatttatgcaa--gat-gttaccattgggagaaactgagtgaag-ggtat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5219180 231 +   6154872 ggatccttgtaatg-gaacagttttgtatcttg-actgtaatg-tt----gttcctatgtgatatttacacatgcaataaaattgtatagaactaaacacacacaaacagat---gagtgtacataaaaatggtgaaatctgagtaagattggtggattttatcaaa-aataatttcctggtgtgatattgtactatatttatgcaa--gat-gttaccattgggagaaactgagtgaag-ggtat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74221320 231 + 122973662 ggatccttgtgatg-gaacagttttgtatcttg-actgtaatg-tt----gttcctatgtgatatttacacatgcaataaaattgtatagaactaaacacacacaaacacat---gagtgtatgtaaaaatggtgaaatttgagtaagattggtggattttatcaat-aataatttcctggtgtgatattgtactatatttatgcaa--gat-gttaccattgggaaaaactgagtgaag-ggtat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29398754 235 + 172585720 ggatccttgtgatg-aaacagttttgtatcttg-actgtaatg-tttgttgttcctatgtgatatttacacatgcaataaaattgcatagaactaaacacacacgaacatat---gagtgtatgtaaaaatggtgaaatctgagtaagattggtggattttatcaat-aataatttcctggtgtgatattgtactacatttatgcaa--gat-gttaccattgggagaaactgagtgatg-agtat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29059634 235 - 170955103 ggatccttgtgatg-aaacagttttgtatcttg-actgtaatg-tttgttgttcctatgtgatatttacacatgcaataaaattgcatagaactaaacacacacgaacacat---gagtgtatgtaaaaatggtgaaatctgagtaagattggtggattttatcaat-aataatttcctggtgtgatattgtactacatttatgcaa--gat-gttaccattgggagaaactgagtgatg-agtat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2049466 237 -   2996164 ggat-cttgtgatgaaaacagttttttatcttgaactgtaatg-ttt----ttcctttgtgatatgtacacatgcaataaaattcagtagacacaaacacacacgaaaacacatggagtgtactgtaaaatggtgaaatctgagtaagattggtgatttatatcaataaaaaatttcctg--gtgata-tgtactacatttatgcaattgatcgttaccattgggagaaactgagtgatgtagtat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1916538 234 -   2157725 ggatccttgtgatg-gaacagttttgtatcttg-actgtaatg-tttgttgttcctatgtgatatttacacatgcaataaaattgcatagaactaaacacacacgaacacat----ggtgtatgtaaaaatggtgaaatctgagtaagattggtggattttatcaat-aataatttcctggtgtgatattgtactacatttatgcaa--gat-gttaccattgggagaaactgagtgaag-agtat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28356437 235 -  71996105 ggatccttgtgatg-aaacagttttgtatcttg-actgtaatg-tttgttgttcctatgtgatatttgcacatgcaataaaattgcatagaactaaacacacacgaacacat---gagtgtatgtaaaaatggtgaaatctgagtaagattggtggattttatcagt-aataatttcctggtgtgatattgtactacatttatgcaa--gat-gttaccattgggagaaactgagtgaag-agtat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2050000 234 +   2316924 ggatccttgtgatg-gaacagttttgtatcttg-actgtaatg-tttgttgttcctatgtgatatttacacatgcaataaaattgcatagaactaaacacacacgaacacat---g-gtgtatgtaaaaatggtgaaatctgagtaagattggtggattttatcaat-aataatttcctggtgtgatattgtactacatttatgcaa--gat-gttaccattgggagaaactgagtgaag-agtat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1920572 235 -   3067355 ggatccttgtgatg-gaacagttttgtatcttg-actgtaatg-tttgttgttcctatgtgatatttacacatgcaataaaattgcatagaactaagcacacacgaacacat---gagtgtatgtaaaaatggtgaaatctgagtaagattggtggattttatcaat-aataatttcctggtgtgatattgtactacatttatgcaa--gat-gttaccattgggagaaactgagtgaag-agtat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171441019 226 - 171630274 -gatccttgtgatg-gaatagttctgtgtcttg-actgtagtg-tt----gttcctgtgta----ttacatatgcaataaaattgtgtagaactaaacacacacaaacacgt---gaatttatgtaaaaatggtgaaatctgaataagattggtaaattttaacgat-gataatttgctggtgtgacactgtactgtatttatgcaa--gat-gttgtcattgggaggaactggttgaag-ggtat
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      263494 224 -    373274 ggatccttgtgatg-gaacagttctgtatcttg-actgtagtg-tt----gttcctctgtgatatttacatatgcaataaaattgtgtagaactaaacacacacaa--atgt---ga----atgtaaaaatggtgaaatctgaataaga-tagtaaattttaatgat-gataatttcctgatgtgatactgtactgtatttgtgcaa--gat-gttatcattgggaggaactggatgaag-ggtac
i cebCap1.NW_016108108v1   I 468 C 0
s aotNan1.NW_018494050v1      194880 232 -    285216 ggatccttgtgatg-gaacagttctgtatcttg-actgtagtgttt----ttttctctgtgatatttacatacgcaataaaattgtgtagaactaaacacacacaaacacat---gaatgtatgtaaaaatggtgaaatctgagtaagattggtaacttttaacaat-gataatttcctgatgtgatactgtactgtatttatgcaa--gat-gttatcatagggaggaactggatgaag-ggtat
i aotNan1.NW_018494050v1   I 424 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      998104 380 -   3516910 I
e canFam3.chr35             25930185 4396 +  26524999 I
e saiBol1.JH378348            266133 856 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I

a score=617898.000000
s hg38.chr6_GL000254v2_alt    197215 71 +   4827813 gctggatctttatttttattttatttta-ttcttttggag-acag-agtcttgctctg-tcgcccaggctggagt
s panTro5.chr6              29184661 71 + 175400573 gctggatctttatttttattttatttta-ttcttttggag-acag-agtcttgctctg-tcgcccaggctggagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29418709 71 + 173848474 gctggatctttatttttattttatttta-ttcttttggag-acag-agtcttgctctg-tcgcccaggctggagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5219411 71 +   6154872 gctggatctttatttttattttatttta-ttcttttggag-acag-agtcttgctctg-tcgcccaggctggagt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74221551 71 + 122973662 gctggatctttatttttattttatttta-ttattttggag-acag-agtcttgctctg-tcgcccaggctggagt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29398989 71 + 172585720 gctggatctttatttttattttatttta-tttttttgaag-acag-agtcttgctctg-tcgctcaggctggagt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29059869 71 - 170955103 gctggatctttatttttattttatttta-tttttttggag-acag-agtcttgctctg-tcgcccaggctggagt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2049703 71 -   2996164 gctggatct---tttttaattaAtttta-tttttttggagtacagcagtcttgctctgttcgccaaggctggagt
i macNem1.NW_012011356v1   C 0 I 4
s cerAty1.NW_012001495v1     1916772 72 -   2157725 gctggatctttatttttattttattttattttttttggag-acag-agtcttgctctg-tcacccaggcaagagt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28356672 72 -  71996105 gctggatctttatttttattttattttattttttttggag-acag-agtcttgctctg-tcgcccaggctggagt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2050234 72 +   2316924 gctggatctttatttttatttcattttactgtttttggag-acag-agtcttgctctg-tcacccaggcaagagt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1920807 71 -   3067355 gctggatctttatttttattttatttta-tttttttggag-acag-agtcttgctctt-tcgcccaggctggagt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171441245 66 - 171630274 gctggatctttatt-----tttatttta-gttttttggaa-acag-agtcttgctctg-tcacccaggctggagc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            266989 60 -    375362 gcTGGATC-----------tttatttta-gttttttggaa-acag-agtcttgctctg-tcgcacagactggagt
i saiBol1.JH378348         I 856 C 0
s cebCap1.NW_016108108v1      263718 66 -    373274 gctggatctttatt-----tttatttta-gttttttggaa-acag-agtcttgctctg-tcgtccaggctggagc
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      195112 66 -    285216 ggtggatctttatt-----tttatttta-gttttttggaa-acag-agtcttgctctg-tcacccaggctggagc
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      998104 380 -   3516910 I
e canFam3.chr35             25930185 4396 +  26524999 I
e otoGar3.GL873742           1567921 1567 -   2232465 I

a score=537458.000000
s hg38.chr6_GL000254v2_alt    197286 65 +   4827813 gcagtggcatgatcttggctcactgtaacctccgcc----tcctgggttcaagcaattctcatgcctca
s panTro5.chr6              29184732 65 + 175400573 gcagtggcatgatcttggctcactgtaacctccgcc----tcctgggttcaagcaattctcatgcctca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29418780 65 + 173848474 gcagtggcatgatcttggctcactgtaacctccgcc----tcctgggttcaagcaattctcatgcctca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5219482 65 +   6154872 gcagtggcatgatcttggctcactgtaacctccgcc----tcctgggttcaagcaattctcatgcctca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74221622 65 + 122973662 gcagtggcgtgatcttggctcactgtgacctccgcc----tcctgggttcaagcaattctcatgcctca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29399060 65 + 172585720 gcagtggcgtgatcttggctcactgtaacctccacc----tcctgggttcaagcaattctcatgcctca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29059940 65 - 170955103 gcagtggcgtgatcttggctcactgtaacctccacc----tcctgggttcaagcaattctcatgcctca
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1916844 65 -   2157725 gcagtggcgtgatcttagctcactgtaacctccacc----tcctgggttcaagcaattctcatgcctca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28356744 65 -  71996105 gcagtggtgtgatcttggctcactgtaacctccacc----tcctaggttcaagcaattctcatgcctca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2050306 65 +   2316924 gcagtggcgtgatcttagctcactgtaacctccacc----tcctgggttcaagcaattctcatgcctca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1920878 65 -   3067355 gcagtggcgtgatcttggctcactgtaacctccacc----tcctggattcaagcaattctcatgcctca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171441311 63 - 171630274 --ggtgacgccatcttggctcactgcaacctccgcc----ttctgagtgcaagcaattatcatgcctca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            267049 67 -    375362 --ggtggtgccattttgtctcactgcaacctctgcctccttcctgggtgcaagcaattataatgcctca
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      263784 63 -    373274 --ggtggtgccatcttggctcactgcaacctctgcc----tcctgggttcaagcaatgatcactcctca
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      195178 63 -    285216 --ggtggcaccatcttggctcactgcaacctccacc----tcctgagtgcaagcaattatcacgcctca
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      998104 380 -   3516910 I
e canFam3.chr35             25930185 4396 +  26524999 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e macNem1.NW_012011356v1     2049774  4 -   2996164 I

a score=1924162.000000
s hg38.chr6_GL000254v2_alt    197351 205 +   4827813 gcctcccaagtagctgggattacaggc-atgtgccaccatggctaggtaatttttgtatttttagtagagacagggttttgccatgttggtcaggctgatcttgaactcctggcctcaagcaatcttccctcctctgcctcccaaagtgcaaggcttataggagcgagccactgcacccagccactgaatcttaattacatcctat
s panTro5.chr6              29184797 205 + 175400573 gcctcccaagtagctgggattacaggc-atgtgccaccatggccaggtaatttttgtatttttagtagagatggggttttgccatgttggtcaggctgatcttgaactcctggcctcaagcaatcttccctcctctgcctcccaaagtgcaaggcttataggagcgagccactgcacccagccactgaatcttaattacatcctat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29418845 205 + 173848474 gcctcccaagtagctgggattacaggc-atgtgccaccattgccaggtaatttttgtatttttagtagagatggggttttgccatgttggtcaggctgatcttgaactcctggcttcaagcaatcttccctcctctgcctcccaaagtgcaaggcttataggagcgagccactgcacccagccactgaatcttaattacatcctat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5219547 205 +   6154872 gcctcccaagtagctgggattacaggc-atgtgccaccatggccaggtaatttttgtatttttagtagagacggggttttgccatgttggtcaggctgatcttgaactcctggcctcaagcaatcttccctcctctgcctcccaaagtggaaggcttataggagtgagccactgcacccagccactgaatcttaattacatcctat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74221687 205 + 122973662 gcctcccaagtagctggggttacaggc-atgtgccaccatggccaggtaatttttgtatttttagtagagacggggttttgccatgttgatcaggctgatcttgaactcctggcctcaagcaatcttcccgcctctgcctcccaatgtgcaaggcttataggagcaagccactgcgcccagctactggatcttaattacatcctat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29399125 206 + 172585720 gcctcccaagtagctgggattacaggctttgtgccaccatgtccagctaatttttgtatttttagtagagatggggttttgccatgttggtcaggctgatcttgaactcctcgcctcaagcaatcttcccgcctctgcctcccaaagtgcaaggattacaggagcgagccactgtccccagccactggatcttaattatatcctat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29060005 206 - 170955103 gcctcccaagtagcttggattacaggctttgtgccaccatgcccagctaatttttgtatttttagtagagatggggttttgccatgttggtcaggctgatcttgaactcctcgcctcaagcaatcttcccgcctctgcctcccaaagtgcaaggattacaggagcgagccactgtccccagccactggatcttaattatatcctat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2049778 206 -   2996164 gcctcccaagtagctgggattacaggctttgtgccaccatgcccagctaatttttgtatttttagtagagatggggttttgccatgttggtcaggctgatcttgaactcctcgcctcaagcaatcttcccgcctctgcctcccaaagtgcaagggttacaggagcgagccactgtccccagccactggatcttaattatatcctat
i macNem1.NW_012011356v1   I 4 C 0
s cerAty1.NW_012001495v1     1916909 206 -   2157725 gcctcccaagtagctgggattacaggctttgtgtcaccatgcccagctaatttttgtatttttagtagaaacggggttttgccatgttggtcaggctgatcttgaactcctggcctcaagcaatcttccctcctctgcctcccaaagtgcaaggattacaggagcgagccactgcccccagccactggatcttaattatatcctat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28356809 206 -  71996105 gcctcccaagtagctgggattacaggctttgtgccaccatgcccagctaatttttgtatttttagtagaggtggggttttgccatgttggtcaggctgatcttgaactccttgcctcaagcaatcttcccgcctctgcctcccaaagtgcaaggattacaggagcgagccactgcccccagccactggatcttaattatatcctat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2050371 206 +   2316924 gcctcccaagtagctgggattacaggctttgtgtcaccatgcccagctaatttttgtatttttagtagaaatggggttttgccatgttggtcaggctgatcttgaactcctggcctcaagcaattttccctcctctgcctcccaaagtgcaaggattacaggagcgagccactgcccccagccactggatcttaattatatcctat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1920943 206 -   3067355 gcttcccaagtagctgggattacaggctttgtgccaccatgcccagctaatttttgtatttttagtagagatggggttttgccatgttggtcaggctgatcttgaactccttgcctcaagcaatcttcccgcctctgcctcccaaagtgcaaggattacaggagcaagccaccgcccccagccactggatcttaattatatcctat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171441374 196 - 171630274 acctcccaagtagctgggattacaggc-atgtgccaccatgcccggctaatttttgtatttttagtagagatggggttttgccatgttagtcaggctgatctcgaactcctgacctcaagaaatcttctggcctcagcctcccaaagtgcaaggaatacaggagtgagccactgcacctggccactagatcttta---------gt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            267116 196 -    375362 ggctcccaagtagctgggtttacaggc-atgtgccaccatgcctggctaatttttgcatatttagtagagatggggttttgccatgttggtcaggctgatctcgaactcctggcctcaagaaatctgccggcctcagcctcccaaaatgcaagggttacaggagtgagccactgcacttggccattagatcttta---------at
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      263847 195 -    373274 gcctctcaagtagctgagattaaagga-gtgtgccaccatgcccggctaatttttgtatttttagtagagatgagattttgccatgttggtcaggctgatctcaaactcctggcctcaagaaatctgccggcctcagcctcccaaagtacaagggttacaggagtgag-caccgcacctggccactagatcttta---------gt
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      195241 196 -    285216 gcctcccaagtagctgggattacaggc-atgtgccaccatgcctggctaatttttgtatttttagtagagatggggttttgccatgttggtcaggctgatcttgaactcctggcctcaagaaatctgctggcctcagcctcccaaagtgcaaggattacaggagtgagccactacatctggccactagatcttta---------gt
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e proCoq1.NW_012147953v1      998104 380 -   3516910 I
e canFam3.chr35             25930185 4396 +  26524999 I
e otoGar3.GL873742           1567921 1567 -   2232465 I

a score=1704998.000000
s hg38.chr6_GL000254v2_alt    197556 168 +   4827813 aactgtatgtgaatctacaattatgtcaaaataaa----ttttaaaaaaTTTCTGCA-GTCACAGCATCAATGACTTGTCTT-TCCCAGCCAGCAAAGCCCTGTGTTTTGCTCTTATTGATTGGACTAATCCCTGTGGACAGAGAAAT-tcatgtgccagttggcttaggtttgg
s panTro5.chr6              29185002 168 + 175400573 aactgtatgtgaatctacaattatgtcaaaataaa----TTTTAAAAAGTTTCTGCA-GTCACAGCATCAATGACTTGTCTT-TCCCAGCCAGCAAAGCCCTGTGTTTTGCTCTTATTGATTGGACTAATCCCTGTGGACAGAGAAAT-tcatgtgccagttggcttaggtttgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29419050 168 + 173848474 cactgtatgtgaatctacaattatgtcaaaataaa----TTTTAAAAAGTTTCTGCA-GTCACAGCATCAATGACTTGTCTT-TCCCAGCCAGCAAAGCCCTGTGTTTTGCTCTTATTGATTGGACTAATCCCTGTGGACAGAGAAAT-tcatgtgccagttggcttaggtttgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5219752 168 +   6154872 aactgtatgtgaatctacaattatgtcaaaataaa----tttaaaaaaaTTTCTGCA-GTCACAGCATCAATGACTTGTCTT-TCCCAGCCAGCAAAGCCCTGTGTTTTGCTCTTACTGATTGGACTAATCCCTGTGGACAGAGAAAT-tcatgtgccagttggcttaggtttgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74221892 168 + 122973662 aactgtatgtgaatctacaattatgtcaaaataaa----ttttaaaaaaTTTCTGCA-GTCACAGCATCAATGACTTGTCTT-TCCCAGCCAGCAAAGCCCTGTGTTTTGCTCTTATTGATTGGACTAATCCTTGTGGACAGAGAAAT-tcatgtgccagttggcttaggtttgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29399331 168 + 172585720 aactgtatgtgaatctacaattatgtcaaaataaa----tttttaaaaaaTTCTGCA-ATCACAACATCAACGACTTGTCTT-TCCCAGCCAGCAAAGCCCTATGTTTTGCTCTTATTGATTGGATTAATCCCTGTGGATAGAGAAAT-TCATGTGCCAactggcttaagtttgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29060211 168 - 170955103 aactgtatgtgaatctacaattatgtcaaaataaa----ttttaaaaaaaTTCTGCA-ATCACAACATCAATGACTTGTCTT-TCCCAGCCAGCAAAGCCCTATGTTTTGCTCTTATTGATTGGATTAATCCCTGTGGATAGAGAAAT-TCATGTGCCAACTGGCTTAAGTTTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2049984 168 -   2996164 aactgtatgtgaatctacaattatgtcaaaataaa----TTTTAAAAAAATTCTGCA-ATCACAACATCAATGACTTGTCTT-TCCCAGCCAGCAAAGCCCTATGTTTTGCTCTTATTGATTGGATTAATCCCTGTGGATAGAGAAAT-tcatgtgccaactggcttaagtttgg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1917115 166 -   2157725 aactgtatgtgaatctacaattatgtcaaaataaa----tttt-aaaaaaTTCTGCA-ATCACAACATCAATGACTTGTCTT-TCCCAGCCAGCAAAGCCTTATATTTTGCTCTTATTGATTGGATTAAT-CCTGTGGACAGAGAAAT-TCATATGCCAactggcttaagtttgg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28357015 168 -  71996105 aactgtatgtgaatctacaattatgtcaaaataaa----ttttaaaaaaaTTCTGCA-ATCACAACATCAATGACTTGTCTT-TCCCAGCCAGCAAAGCCCTATGTTTTGCTCTTATTGATTGGATTAATCCCTGTGGATAGAGAAAT-TCATGTGCCAACTGGCTTAAGTTTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2050577 168 +   2316924 aactgtatgtgaatctacaattatgtcaaaataaa----ttttaaaaaaTTTCTGCA-ATCACAACATCAATGACTTGTCTT-TCCCAGCCAGCAAAGCCTTATATTTTGCTCGTATTGATTGGATTAATCCCTGTGGACAGAGAAAT-TCATATGCCAactggcttaagtttgg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1921149 168 -   3067355 aactgtatgtgaatctacaattatgtcaaaataaa----ttttaaaaaaTTTCTGCA-ATCACAACATCAATGACTTGTCTT-TCCCAGCCAGCAAAGCCCTATGTTTTGCTCTTATTGATTGGATTAATCCCTGTGGATAGAGAAAT-tcatgtgccaactggcttaagtttgg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171441570 161 - 171630274 aactgtacctgaatctacaattatgtcaaaataag----ttt---taaaaaTATGCA-TTCACAACATCAATTACTTCTTTT-T-CCAGGTAGCAAAGCTCTGTATTTTGCTC---TTGATTGGACTAATGCCTGTGGACAGAGAAAG-TCATGTGCCGACTGGCTTAGGTTTAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            267312 165 -    375362 aactgtatgtgaatctacaattatgtcaaaataag----tttaaaaaaaaaTCTGCA-ATCACAACATCAATTACTTCTTTT-TCCCAGGTAGTAAAGCTCTGTATTTTGCTC---TTGATTGGACTAATGCCTGTGGACAGAGAAAT-tcatgtgcctactgggttagagttag
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      264042 165 -    373274 aactgtatgtgaatctacaattatgtcaaaataag----ttaaaaaaaaaaTCTGCA-ATCACAACATCAATTATTTCTTTT-TCCCAGGTAGCAAAGCTCTATATTGTGCTC---TTGATTGGACTAATGCCTGTAGACAGAGAAAT-tcatgtgccgactggcttagagttac
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      195437 165 -    285216 aactgtatgtgaatctacaattatgtcaaaataag----ttaaaaaaaaaaTCTGCA-ATCACAACATCAATTACTTCTTTT-TCCCAGGTAGCACAGCTCTGTATTTTGCTC---TTGATTGGACTAATGCCTGTGGATGCAAAAAT-TCATGTGCCGATTGGCCTAGGTGTAG
i aotNan1.NW_018494050v1   C 0 C 0
s proCoq1.NW_012147953v1      998484 171 -   3516910 aactgtatgtgaatctacaattatcacaaaataaaaaattttttaaaaCTTTCTGCATATCACAACATCCATATCTTGTCTTCTCCCAGCCAACAAAGCTCAGTGTTTTGCTCTT----ATtggactaatcactgtggacagagaaatgtcatgtgccgattggcttagatttgg
i proCoq1.NW_012147953v1   I 380 N 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25930185 4396 +  26524999 I
e otoGar3.GL873742           1567921 1567 -   2232465 I

a score=715829.000000
s hg38.chr6_GL000254v2_alt    197724 73 +   4827813 ttttactacctattcctgaaccaattactatggcaaggggactgagataatgctcactggtctatgcatcaag
s panTro5.chr6              29185170 73 + 175400573 ttttactacctattcctgaaccaattactatggcaaggggactgagataatgctcactggtctatgcatcaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29419218 73 + 173848474 ttttactacctattcctgaaccaattactatggcaaggggactgagataatgctcactggtctatgcatcaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5219920 73 +   6154872 ttttactacctattcctgaaccaattactatggcaaggggactgagatactgctcactggtctatgcatcaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74222060 73 + 122973662 ttttactacctattcctgaaccaattaccatggcaaggggactgagataatgctcactggtctatacatcaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29399499 73 + 172585720 ttatactaccaattcctgaaccaattactatggcaagggaactgagataatgctcACTAGTCTATGCATCAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29060379 73 - 170955103 TTATACTACCTATTCCTGAACCAATTACTATGGCAAGGGAACTGAGATAATGCTCACTAGTCTATGCATCAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2050152 73 -   2996164 ttatactacctattcctgaaccaattactatggcaagggaactgagataatgctcactagtctatgcatcaag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1917281 73 -   2157725 ttacactacctattcctgaaccaattactatggcaagggaactgagataatgctcactagtctatgcatcaag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28357183 73 -  71996105 TTATACTACCTATTCCTGAACCAATTACTATGGCAAGGGAACTGAGATAATGCTCACTAGTCTATGCGTCAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2050745 73 +   2316924 ttacactacctattcctgaaccaattactatggcaagggaactgagataatgctcactagtctatgcatcaag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1921317 73 -   3067355 ttatactacctattcctgaaccaattactatggcaagggaactgagataatgctcactagtctatgcatcaag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171441731 72 - 171630274 TTTTACTACCTATTCCTGAACCGATTACTGTGGCAAGGTAACTGAGATCATGCCCA-TGGTGTATGCATCAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            267477 72 -    375362 ttttactacctattcctgaaccaattactgtggcaaggtgactgagatcaccctca-tggtctatgcatcaag
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      264207 72 -    373274 ttttactacctattcctgaaccaatcactgtggcaaggtgactgagatcatgctcA-TGGTCTATGCATCAAG
i cebCap1.NW_016108108v1   C 0 I 3713
s aotNan1.NW_018494050v1      195602 72 -    285216 TTTTACtacctattcctgaaccaattactgtggcaaggtgactgagatcatgctca-tggtctgtgcatcaag
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25930185 4396 +  26524999 I
e otoGar3.GL873742           1567921 1567 -   2232465 I

a score=45780.000000
s hg38.chr6_GL000254v2_alt    197797 5 +   4827813 accca
s panTro5.chr6              29185243 5 + 175400573 accca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29419291 5 + 173848474 accca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5219993 5 +   6154872 accca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74222133 5 + 122973662 accca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29399572 5 + 172585720 ACCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29060452 5 - 170955103 ACCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2050225 5 -   2996164 accca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1917354 5 -   2157725 accca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28357256 5 -  71996105 ACCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2050818 5 +   2316924 accca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1921390 5 -   3067355 accca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171441803 5 - 171630274 ACCTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            267549 5 -    375362 aCACA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      195674 5 -    285216 accca
i aotNan1.NW_018494050v1   C 0 I 5382
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25930185 4396 +  26524999 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e cebCap1.NW_016108108v1      264279 3713 -    373274 I

a score=14228.000000
s hg38.chr6_GL000254v2_alt    197802 2 +   4827813 cT
s panTro5.chr6              29185248 2 + 175400573 cT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29419296 2 + 173848474 cT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5219998 2 +   6154872 cT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74222138 2 + 122973662 cT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29399577 2 + 172585720 CT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29060457 2 - 170955103 CT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2050230 2 -   2996164 cT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1917359 2 -   2157725 cT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28357261 2 -  71996105 CT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2050823 2 +   2316924 cT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1921395 2 -   3067355 cT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171441808 2 - 171630274 TT
i calJac3.chr4             C 0 I 2670
s saiBol1.JH378348            267554 2 -    375362 TT
i saiBol1.JH378348         C 0 I 1831
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25930185 4396 +  26524999 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      195679 5382 -    285216 I
e cebCap1.NW_016108108v1      264279 3713 -    373274 I

a score=292936.000000
s hg38.chr6_GL000254v2_alt    197804 52 +   4827813 G-AAAAATGTAATTGTCATTAGTCATCTAAATATAATTTATTTTTGAATTGGT
s panTro5.chr6              29185250 52 + 175400573 G-AAAAATGTAATTGTCATTAGTCATCTAAATATAATTTATTTTTGAATTGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29419298 52 + 173848474 G-AAAAATGTAATTGTCGTTAGTCATCTAAATATAATTTATTTTTGAATTGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5220000 52 +   6154872 G-AAAAATGTAATTGTCATTAGTCATCTAAATATAATTTATTTTTGAATTGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74222140 52 + 122973662 G-AAAAATGTAATTGTCATTAGTCATCTAAATATCATTTATTTTTGAATTGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29399579 52 + 172585720 G-AAAAATGTAATTGTCATTAGTCGTTTAAATATCATTTATTTTTGAACTGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29060459 52 - 170955103 G-AAAAATGTAATTGTCATTAGTCGTTTAAATATCATTTATTTTTGAACTGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2050232 52 -   2996164 G-AAAAATGTAATTGTCATTAGTCGTTTAAATATCATTTATTTTTGAACTGGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1917361 52 -   2157725 G-AAAAATGTAATTGTCATTAGTCGTTTAAATATCATTTATTTTTGAACTGGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28357263 53 -  71996105 GAAAAAATGTAATTGTCATTAGTCGTTTAAATATCATTTATTTTTGAACTGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2050825 52 +   2316924 G-AAAAATGTAATTGTCATTAGTCGTTTAAATATCATTTATTTTTGAACTGGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1921397 52 -   3067355 G-AAAAATGTAATTGTCATTAGTCGTTTAAATATCATTTATTTTTGAACTGGT
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25930185 4396 +  26524999 I
e saiBol1.JH378348            267556 1831 -    375362 I
e otoGar3.GL873742           1567921 1567 -   2232465 I
e aotNan1.NW_018494050v1      195679 5382 -    285216 I
e cebCap1.NW_016108108v1      264279 3713 -    373274 I
e calJac3.chr4             171441810 2670 - 171630274 I

a score=505502.000000
s hg38.chr6_GL000254v2_alt    197856 76 +   4827813 TATGTGCTTCCCAACATTTAGCTATATTCTATTTCCTGGGGATAAAATCTTTGAAGACAGTGGGAGGAAAAGCTAA
s panTro5.chr6              29185302 76 + 175400573 TATGTGCTTCCCAACATTTAGCTATATTCTATTTCCTGGGGATAAAATCTTTGAAGACAGTGGGAGGAAAAGCTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29419350 76 + 173848474 TATGTGCTTCCCAACATTTAGCTATATTCTATTTCCTGGGGATAAAATCTTTGAAGACAGTGGGAGGAAAAGCTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5220052 76 +   6154872 TATGTGCTTCCCAACATTTAGCTATATTCTATTTCCTGGGGATAAAATCTTTGAAGACAGTGGTAGGGAAAGCTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74222192 76 + 122973662 TATGTGCTTCCCAACATTTAGCTATATTCTATTTCCTGGGGATAAAATCTTTGAAGACAGTGGGAGGAAAAGCTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29399631 76 + 172585720 TGTGTGCTTCCCAACATTTAGCTATATTCTATTTCCTGGGGATAAAATCTTTGAAGACAGTGGGAGGGAAAGCTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29060511 76 - 170955103 TGTGTGCTTCCCAACATTTAGCTATATTCTATTTCCTGGGGATAAAATCTTTGAAGACAGTGGGAGGGAAAGCTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2050284 76 -   2996164 TGTGTGCTTCCCAACATTTAGCTATACTCTATTTCCTGGGGATAAAATCTTTGAAGACAGTGGGAGGGAAAGCTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1917413 76 -   2157725 TGTGTGCTTCCCAACATTTAACTATATTCTATTTCCTGGGGATAAAATTTTTGAAGACAGTGGGAGGGAAAGCTAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28357316 76 -  71996105 TGTGTGCTTCCCAACATTTAGCTATATTCTATTTCCTGGGGATAAAATCTTTGAAGACAGTGGGAGGGAAAGCTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2050877 76 +   2316924 TGTGTGCTTCCCAACATTTAACTATATTCTATTTCCTGGGGATAAAATTTTTGAAGACAGTGGGAGGGAAAGCTAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1921449 76 -   3067355 TGTGTGCTTCCCAACATTTAGCTATATTCTATTTCCTGGGGATAAAATCTTTGAAGACAATGGGAGGGAAAGCTAA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1569488 74 -   2232465 TGTTTGCTTCCCAACATTTAACTGTGTTTTATTTCCTGGACATCAAATAATTGAAGCCAGTGG--GGAAAAATTAA
i otoGar3.GL873742         I 1567 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25930185 4396 +  26524999 I
e saiBol1.JH378348            267556 1831 -    375362 I
e aotNan1.NW_018494050v1      195679 5382 -    285216 I
e cebCap1.NW_016108108v1      264279 3713 -    373274 I
e calJac3.chr4             171441810 2670 - 171630274 I

a score=1614692.000000
s hg38.chr6_GL000254v2_alt    197932 230 +   4827813 TCTGACCCCTTCTTTCAAACAGCAAGGGGTT-GAGGATTTCCTTGATTTTAACACAGGCATTTTGAATATGAGCAGACCATGCCTggtaaacacactagacaagattcctgcccttatggagctgacaggccactgggggCTGGATGGAGGCCGAGATGGTAGCTGTCTCCAAGATAGTCACTATC--TTAGAGACCTCTCATATGCACATG---ACATTGGATCACCAAGATATG
s panTro5.chr6              29185378 230 + 175400573 TCTGACCCCTTCTTTCAAACAGCAAGGGGTT-GAGGATTTCCTTGATTTTAACACAGGCATTTTGAATATGAGCAGACCATGCCTggtaaacacactagacaagattcctgcccttatggagctgacaggccactgggggCTGGATGGAGGCCGAGATGGTAGCTGTCTCCAAGATAGTCACTATC--TTAGGGACCTCTCATATGCACATG---ACATTGGATCACTAAGATATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29419426 230 + 173848474 TCTGACCCCTTCTTTCAAACAGCAAGGGGTT-GAGGATTTCCTTGATTTTAACACAGGCATTTTGAATATGAGCAGACCATGCCTggtaaacacactagacaagattcctgcccttatggagctgacaggccactgggggCTGGATGGAGGCCGAGATGGTAGCTGTCTCCAAGATAGTCACTATC--TTAGGGACCTCTCATATGCACATG---ACATTGGATCACTAAGATATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5220128 230 +   6154872 TCTGACCCCTTCTTTCAAACAGCAAGGGGTT-GAGGATTTCCTTGATTTTAACACAGGCATTTTGAATATGAGCAGACCATGCCTggtaaacacactagacaagattcctgcccttatggagctggcaggccactgggggCTGGATGGAGGCCGGGATGGTAGCTGTCTCCAAGATAGTCACTATC--TTAGAGACCTCTCATATGCACATG---ACATTGGATCACCAAGATATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74222268 229 + 122973662 TCTGACCCATTCTTTCAAACAGCAAGGGGTT-GAGGATTTCCTTGATTTTAACACAGGCATTTTGAATATGAGCAGACTATGCCTGGTAAACACACTAGATAAGATTCCTGCCC-TGTGGAGCTGACAGGCCACTGGGGGCTGGATGGAGGCAGGGATGGTAGCTGTCTCCAAGATAGTCACTATC--TTAGAGACCTCTCATATGCACATG---ACATTGGATCACCAAGATATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29399707 229 + 172585720 TCTGACCCATTCTTTCAAACAGCAAGGGATT-GAGGATTTCCTTGATTTTGACACAGGCA-TTTGAATATGAGCAGACTATACCTggtaaacacactagacaagattcctgcccttatggagctgacaggccactgggggCTGGATGGAGGCAGGGATGGTAGCTGTCTCCAAGATAGTCACTATC--TTAGAGACATCTCATATGCACATG---ACATTGGATCACCAAGATATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29060587 229 - 170955103 TCTGACCCATTCTTTCAAACAGCAAGGGATT-GAGGATTTCCTTGATTTTGACACAGGCA-TTTGAATATGAGCAGACTATACCTggtaaacacactagacaagattcctgcccttatggagctgacaggccactgggggCTGGATGGAGGCAGGGATGGTAGCTGTCTCCAAGATAGTCACTATC--TTAGAGACATCTCATATGCACATG---ACATTGGATCACCAAGATATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2050360 229 -   2996164 TCTGACCCATTCTTTCAAACAGCAAGGGATT-GAGGATTTCCTTGATTTTGACACAGGCA-TTTGAATATGAGCAGACTATACCTggtaaacacactagacaagattcctgcccttatggagctgacaggccactgggggCTGGATGGAGGCAGGGATGGTAGCTGTCTCCAAGATAGTCACTATC--TTAGAGACATCTCATATGCACATG---ACATTGGATCACCAAGATATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1917489 229 -   2157725 TCTGACCCATTCTTTCAAACAGCAAGGGGTT-GAGGATTTCCTTGATTTTGACACAGGCA-TTTGAATATAAGCAGACTATACCTggtaaatgcactagacaagattcctgcccttatggagctgacaggccactgggggctagatggaGGCAGGGATGGTAGCTGTCTCCAAGATAGTCAGTATC--TTAGAGACATCTCATATGCACATG---ACATTGGATCACCAAGATATG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28357392 229 -  71996105 TCTGACCCATTCTTTCAAACAGCAAGGGACT-GAGGATTTCCTTGATTTTGACACAGGCA-TTTGAATATGAGCAGACCATACCTagtgaacacactagacaagattcctgcccttatggagctgacaggccactgggggCTGGATGGAGGCAGGGATGGTAGCTGTCTCCAAGATAGTCACTATC--TTAGAGACATCTCATATGCACATG---ACATTGGATCACCAAGATACG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2050953 229 +   2316924 TCTGACCCATTCTTTCAAACAGCAAGGGGTT-GAGGATTTCCTTGATTTTGACACAGGCA-TTTGAATATAAGCAGACTATACCTggtaaatgcactagacaagattcctgcccttatggagctgacaggccactgggggCTGGATGGAGGCAGGGATGGTAGCTGTCTCCAAGATAGTCAGTATC--TTAGAGACATCTCATATGCACATG---ACATTGGATCACCAAGATATG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1921525 229 -   3067355 TCTGACCCATTCTTTCAAACAGCAAGGGATT-GAGGATTTCCTTGATTTTGACACAGGCA-TTTGAATATGAGCAGACTATACCTggtaaacacactagacaagattcctgcccttatggagctgacaggccactgggggCTGGATCGAGGCAGGGATGGTAGCTGTCTCCAAGATAGTCAGTATC--TTAGAGACATCTCATATGCACATG---ACATTGGATCACCAAGATATG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1569562 226 -   2232465 TCTGTTCCATTCTTTCAAATAGCAAGGGTTT-GGGGATTTTC-----TTTAATATaggca-ctttcatatgagcagagtatgcctagtatacacactagataaaatttctgcactgatggagctcacagaccactaggtgctgggtggaggcagaGATGGTGGCTATCTCCAAGATGGTCAGCATCAGTTTCTTACCTCCTGTATACTCATG---ACATTGCATcatcaagaggtg
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25934581 220 +  26524999 tCTGACCTGTCCTTTTAAACAGCAAGGGTTTGGGGGATTTTGTTGA-----ATAcaggca-ctttgatatgagcagagggtgtctggtaaacacactagacaagatccctgcccttggggagctcaccag-cactgggggCTGGGTGGGGGC--GAGTGGAAGCTGCCTCCACGGTGCTCACCATC-------GGCTTCTTTCCTCCCcattggcacactgtgccatcaggacatg
i canFam3.chr35            I 4396 I 435
e dasNov3.JH561790             80168 9105 -    302817 I
e saiBol1.JH378348            267556 1831 -    375362 I
e aotNan1.NW_018494050v1      195679 5382 -    285216 I
e cebCap1.NW_016108108v1      264279 3713 -    373274 I
e calJac3.chr4             171441810 2670 - 171630274 I

a score=33004.000000
s hg38.chr6_GL000254v2_alt    198162 6 +   4827813 TAAgct
s panTro5.chr6              29185608 6 + 175400573 TAAgct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29419656 6 + 173848474 TAAgct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5220358 6 +   6154872 TAAgct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74222497 6 + 122973662 TAAGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29399936 6 + 172585720 TAagtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29060816 6 - 170955103 TAagtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2050589 6 -   2996164 TAagtt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1917718 6 -   2157725 TAagtt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28357621 6 -  71996105 TAagtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2051182 6 +   2316924 TAagtt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1921754 6 -   3067355 TAagtt
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1569788 6 -   2232465 cagtct
i otoGar3.GL873742         C 0 I 563
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25934801 435 +  26524999 I
e saiBol1.JH378348            267556 1831 -    375362 I
e aotNan1.NW_018494050v1      195679 5382 -    285216 I
e cebCap1.NW_016108108v1      264279 3713 -    373274 I
e calJac3.chr4             171441810 2670 - 171630274 I

a score=1740760.000000
s hg38.chr6_GL000254v2_alt    198168 326 +   4827813 gggcatcatggcacatgcctgtagttccagctacttgggaggctaaggtgggaggattgcctgagcccaggagtttgaggctgcagtgagctatgatcatgccactgcactccaacctgggcgacagagtgagatcctcatct----------t-aaaaaaaaaaaag------------------gccgggtgcggtggctcgcacctgtaatcccagcactttgggaagccaaagcaggcagatcacctgaggtcaggagttcaaaactagcctaagcaacatggagaaaccctgtctctacta-------aaaatacaaaattagctgggcatggtggtgcatgcctgtaatcccagtt
s panTro5.chr6              29185614 325 + 175400573 gggcatcatggcacttgcctgtagttccagctacttgggaggctaaggtgggaggattgcctgagcccaggagtttgaggctgcagtgagctatgatcatgccactgcactccaacctgggtgacagagtgagatcctcgtct----------t--aaaaaaaaaaag------------------gccgggtgtggtggctcgcacctgtaatcccagcactttgggaagccaaagcaggcagatcacctgaggtcaggagttcaaaactagcctaaccaacatggagaaacactgtctctacta-------aaaatacaaaattagctgggcatggtggcacatgcctgtaatcccagtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29419662 326 + 173848474 gggcatcatggcacatgcctgtagttccagctacttgggaggctaaggtgggaggattgcctgagcccaggagtttgaggctgcagtgagctatgatcatgccactgcactccaacctgggcgacagagtgagatcctcgtct----------t-aaaaaaaaaaaag------------------gtcgggtgtggtggctcgcacctgtaatcccagcactttgggaagccaaagcaggcagatcacctgaggtcaggagttcaaaactagcctaaccaacatggagaaacactgtctctacta-------aaaatacaaaattagctgggcatggtggcacatgcctgtaatcccagtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5220364 325 +   6154872 gggcatcatggcacatgcctatagttccagctacttgggaggctaaggtgggaggattgcctgagcccaggagtttgaggctgcagtgagctatgatcatgccactgcactccaacctgggcgacagagtgagatccttgtct----------t--aaaaaaaaaaag------------------gccgggtgcggtggctcgcacctgtaatcccagcactttgggaagctgaagcaggcagatcacctgaggtcaggagttcaaaactagcctaaccaacatggagaaaccctgcctctacta-------aaaatacaaaattagctgggcatggtggcgcatgcctgtaatcccagtt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74222503 327 + 122973662 gggcatcatggcacatgcctgtagttccagctacttgggaggctaaggtgggaggattgcctgagcccaggagtttgaggctgcagtgagctatgatcatgccactgcactccagcctgggcaacagagtgagatcctcgtct----------taaaaaaaaaaaaag------------------gccgggcgcggtggcttgcgcctgtaatcccagcactttgggaagccgaagcaggcagatcacctgaggtcaggagttcaagactagcctaaccaacatggagaaaccctgtctctacta-------aaaatacaaaattagctgggtgtggtggcgcatgcctgtaatcccattt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29399942 326 + 172585720 gggtatcatggcacatgcttgtagttccagctacttgggatgctaaggtaggaggattgcctgagcccaggagttggaggctgcagtgagctatgatcacaccactgcactccagcctgggggacacagtgagatcttcatct----------a-aaaaaaaaaaaaC------------------gccgggcgtggtggctcacacctgcaatcccagcaatttgggaggccgaggcgggcagatcacctgaggtcaggagttcaagactagcctaaccaacatggagaaaccacgtctctacta-------aaaatacaaaaTTAActgggtgtggtggcacatgcctgtaatcccagtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29060822 326 - 170955103 gggtatcatggcacatgcttgtagttccagctacttgggatgctaaggtaggaggattgcctgagcccaggagttggaggctgcagtgagctatgatcacaccactgcactccagcctgggggacacagtgagatcttcatct----------a-aaaaaaaaaaaaC------------------gccgggcgtggtggctcacacctgcaatcccagcaatttgggaggccgaggcgggcagatcacctgaggtcaggagttcaagactagcctaaccaacatggagaaaccacgtctctacta-------aaaatacaaaaTTAActgggtgtggtggcacatgcctgtaatcccagtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2050595 326 -   2996164 gggtatcatggcacatgcttgtagttccagctacttgggatgctaaggtaggaggattgcctgagcccaggagttggaggctgcagtgagctatgatcacaccactgcactccagcctgggggacacagtgagatcttcatct----------a-aaaaaaaaaaaaC------------------Cccgggcgtggtggctcacacctgcaatcccagcaatttgggaggccgaggtgggcagatcacctgaggtcaggagttcaagactagcctaaccaacatggagaaaccacgtctctacta-------aaaatacaaaaTTAActgggtgtggtggcacatgcctgtaatcccagtt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1917724 351 -   2157725 gggtatcatggcacatgcctgtagttccagctacttgggacgctaaggtgggaggattgcctgagcccaggagttggagactgcagtgagctatgatcacaccactgcactccagcctgtgggacacagtgagatcctCGTAT----------T-aaaaaaaaaaaaaaaaaaaaaaaaaaaaaTgggcgggcgcggtggctcacacctgcaatcccagcactttgggaggccgaggcaggcagatcacctgaggtcaggggttcaagactagcctaaccaacatggagaaaccacgtctctactaaaaatacaaaaTACAAAATTAGTTgggtgtggtggcacatgcctgtaatcccagtt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28357627 324 -  71996105 gggtatcatggcacatgcttgtagttctagctacttgggacgctaaggtaggaggattgcctgagcccaggagttggaggctgcagtgagctatgatcacaccactgcactccagcctgggggacacagtgagatcttcgtct-------------aaaaaaaaaaGC------------------gccgggcgtggtggcttacacctgcaatcccagcactttgggaggccgaggcgggcagatcacctgaggtcaggagttcaagactagcctaaccaacatggagaaaccacgtctctacta-------aaaatacaaaaTTAActgggtgtggtggcacatgcctgtaatcccagtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2051188 343 +   2316924 gggtatcatggcacatgcctgtagttccagctacttgggacgctaaggtgggaggattgactgagcccaggagttggagactgcagtgagctatgatcacaccactgcactccagcctgtgggacacagtgagatcctcgtattaaaaaaaaaa-aaaaaaaaaaaag------------------ggcgggcacggtggctcacacctgcaatcccagcactttgggaggccgaggcaggcagatcacctgaggtcaggggttcaagactagcctaaccaacatggagaaaccacgtctctactaaaaatacaaaaTACAAAATTAGTTgggtgtggtggcacatgcctgtaatcccagtt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1921760 297 -   3067355 gggtatcatggcacatgcttgtagttccagctacttgggacgctaaggtgggaggattgcctgagcccaggagttggaggctgcagtgagctatgatcacaccactgcacttcagcctgggggacacagtgagatcctC---------------------------------------------------------gtggctcacacctgcaatcccggcacttt-ggaggccgaggcgggcagatcatctgaggtcaggagttcaagactagcctaaccaacatggagaaaccacatctctacta-------aaaatacaaaaTTAgctgggtgtggtggcacatgcctgtaatcccagtt
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25934801 435 +  26524999 I
e saiBol1.JH378348            267556 1831 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      195679 5382 -    285216 I
e cebCap1.NW_016108108v1      264279 3713 -    373274 I
e calJac3.chr4             171441810 2670 - 171630274 I

a score=36784.000000
s hg38.chr6_GL000254v2_alt    198494 12 +   4827813 acttgggaggct
s panTro5.chr6              29185939 12 + 175400573 acttgggaggct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29419988 12 + 173848474 acttgggaggct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5220689 12 +   6154872 acttgggaggct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74222830 12 + 122973662 acttgggagggt
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     1918075 12 -   2157725 tcttgggaggct
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28357951 12 -  71996105 acttgggaggct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2051531 12 +   2316924 tcttgggaggct
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1922057 12 -   3067355 acttgggaggct
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25934801 435 +  26524999 I
e saiBol1.JH378348            267556 1831 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      195679 5382 -    285216 I
e cebCap1.NW_016108108v1      264279 3713 -    373274 I
e calJac3.chr4             171441810 2670 - 171630274 I
e macNem1.NW_012011356v1     2050921  0 -   2996164 C
e macFas5.chr4              29061148  0 - 170955103 C
e rheMac8.chr4              29400268  0 + 172585720 C

a score=316373.000000
s hg38.chr6_GL000254v2_alt    198506 348 +   4827813 gaggcaggagaatcacttgaacctgggaggtagaggttgcagtgagccaagatcacaccattgcactccagcctgggcaacaagagtgaaactctgtctcaaaaaacaaacaaacaaaCAACAACAAC----AACAGAAAACAGggtgcagcccactcctccagccccttgaatctggtgggctggcctatgagtactgtgactaacactgtatggcagaagtgattctataccagtgccaggccagggctgtaagagggctgacagcccctgtcttgtgtctctgagtcctgAGACACCATAGATATGTCTTtattagtctcctcaggctggcatacaaaatactagatgg
s panTro5.chr6              29185951 348 + 175400573 gaggcaggagaatcacttgaacctgagaggtagaggttgcagtgagccaagatcacaccattgcactccagcctgggcaacaagagtgaaactctgtctcaaaaaacaaacaaacaaacaacaacaac----aaCAGAAAACAGggtgcagcccactcctccagccccttgaatctggtgggctggcctatgagtactgtgactaacactgtatggcagaagtgattctataccagtgccaggccggggctgtaagagggctgacagcccctgtcttgtgtctctgagtcctgAGACACCATAGATATGTCTTtattagtctcctcaggctggcatacaaaatactagatgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29420000 348 + 173848474 gaggcgggagaatcacttgaacctgggaggtagaggttgcagtgagccaagatcacaccattgcactccagcctgggcaacaagagtgaaactctgtctcaaaaaacaaacaaacaaaCAACAACAAC----AACAGAAAACAGggtgcagcccactcctccagccccttgaatctggtgggctggcctatgagtactgtgactaacactgtatggcagaagtgattctataccagtgccaggccggggctgtaagagggctgacagcccctgtcttgtgtctctgagtcctgAGACACCATAGATATGTCTTtattagtctcctcaggctggcatacaaaatactagatgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5220701 347 +   6154872 gaggcaggagaatcacttgaacctgggaggtagaggttgcagtgagccaagatcacaccattgcactccagcctgggcaacaagag-aaaactctgtctcaaaaaacaaacaaacaaaCAACAACAAC----AACAGAAAACAGggtgcagcccactcctccagccccttgaatctggtgggctggcctatgagtactgtgactaacactgtatggcagaagtgattctataccagtgccaggccaggcctgtaagagggctgacagcccctgtcttgtgtctctgagtcctgAGACACCATAGATATGTCTTtattagtctcctcaggctggcatacaaaatagtagatgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74222842 352 + 122973662 gaggcaggagaatcacttgaacctgggagatggaggttacagtgagccaagattacaccattgcactccagcctgggcaacaagagcgaaactctgtctcaaaaaacaaacaaacaaacaacaacaacaaaaaaaaaaaaACAGggtgcagcccactcctccactcccttgaatctggtgggctggcctatgagtactctgactaaccctgtatggcagaagtgattctataccagtgccaggccagggctgtaagagggctgacagcccctgtcttgtgtctctgagtcctgAGACACCATAGATATATCTTtattagtctcctcaggctggcatacaaaatactagatgg
i nomLeu3.chr1a            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25934801 435 +  26524999 I
e saiBol1.JH378348            267556 1831 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      195679 5382 -    285216 I
e cebCap1.NW_016108108v1      264279 3713 -    373274 I
e calJac3.chr4             171441810 2670 - 171630274 I
e colAng1.NW_012115566v1     1922069   0 -   3067355 C
e manLeu1.NW_012104165v1     2051543   0 +   2316924 C
e chlSab2.chr17             28357963   0 -  71996105 C
e cerAty1.NW_012001495v1     1918087   0 -   2157725 C
e macNem1.NW_012011356v1     2050921   0 -   2996164 C
e macFas5.chr4              29061148   0 - 170955103 C
e rheMac8.chr4              29400268   0 + 172585720 C

a score=10785.000000
s hg38.chr6_GL000254v2_alt    198854 9 +   4827813 cttaaaaaa
s panTro5.chr6              29186299 9 + 175400573 cttaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29420348 9 + 173848474 cttaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5221048 9 +   6154872 cttaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74223194 9 + 122973662 cttaaaaac
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171444480 9 - 171630274 ctcaaaaaa
i calJac3.chr4             I 2670 I 12
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25934801 435 +  26524999 I
e saiBol1.JH378348            267556 1831 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      195679 5382 -    285216 I
e cebCap1.NW_016108108v1      264279 3713 -    373274 I
e colAng1.NW_012115566v1     1922069 0 -   3067355 C
e manLeu1.NW_012104165v1     2051543 0 +   2316924 C
e chlSab2.chr17             28357963 0 -  71996105 C
e cerAty1.NW_012001495v1     1918087 0 -   2157725 C
e macNem1.NW_012011356v1     2050921 0 -   2996164 C
e macFas5.chr4              29061148 0 - 170955103 C
e rheMac8.chr4              29400268 0 + 172585720 C

a score=5880.000000
s hg38.chr6_GL000254v2_alt    198863 4 +   4827813 cggg
s panTro5.chr6              29186308 4 + 175400573 cagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29420357 4 + 173848474 cagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5221057 4 +   6154872 cagg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74223203 4 + 122973662 caga
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171444501 4 - 171630274 caga
i calJac3.chr4             I 12 C 0
s saiBol1.JH378348            269387 4 -    375362 caga
i saiBol1.JH378348         I 1831 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25934801 435 +  26524999 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      195679 5382 -    285216 I
e cebCap1.NW_016108108v1      264279 3713 -    373274 I
e colAng1.NW_012115566v1     1922069 0 -   3067355 C
e manLeu1.NW_012104165v1     2051543 0 +   2316924 C
e chlSab2.chr17             28357963 0 -  71996105 C
e cerAty1.NW_012001495v1     1918087 0 -   2157725 C
e macNem1.NW_012011356v1     2050921 0 -   2996164 C
e macFas5.chr4              29061148 0 - 170955103 C
e rheMac8.chr4              29400268 0 + 172585720 C

a score=766291.000000
s hg38.chr6_GL000254v2_alt    198867 296 +   4827813 aatttatttgctcacattttattttctggatactggaagtccaagatcaaa--gtctgcagggttggtttctcctgaggtctctctcct------tggctcgcaggcagccgccttctgactatgtcctcacatgaccttttctctgtgcgcatgcac---------ctctgatgtctcttcttcttcttataaggacaccagtattatcagcttagggcctcactcttatgacatcatttatccttaattgtcatccctataaagatcc-tatctccaggcagtcgcggtggctcacgcctgtaattccagca
s panTro5.chr6              29186312 296 + 175400573 aatttatttgctcacattttattttctggatactggaagtccaagatcaaa--gtctgcagggttggtttctcctgaggtctctctcct------tggctcgcaggcagccgccttctgactatgtcctcacatgaccttttctctgtgcgcatgcac---------ctctgatgtctcttcttcttcttataaggacaccagtattatcagcttagggcctcactcttatgacatcatttatccttaattgtcatccctataaagatcc-tatctccaggcagttgcggtggctcacgcctgtaattccagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29420361 296 + 173848474 aatttatttgctcacattttattttctggatactggaagtccaagatcaaa--gtctgcagggttggtttctcctgaggtctctctcct------tggctcgcaggcagccgccttctgactatgtcctcacatgaccttttctctgtgcgcatgcac---------ctctgatgtctcttcttcttcttataaggacaccagtattatcagcttagggcctcactcttatgacatcatttatccttaattgtcatccctataaagatcc-tatctccaggcagttgcggtggctcacgcctgtaattccagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5221061 296 +   6154872 aatttatttgctcccattttattttctggatactggaagtccaagatcaaa--gtctgcagggttggtttctcctgaggtctctctcct------tggctcgcaggcagccgccttctgactatgtcctcacatgaccttttctctgtgcacatgcac---------ctctgatgtctcttcttcttcttataaggacactagtattatcagcttagggcctcactcttatgacatcatttatccttaattgtcattcctgtaaagatcc-tatctccaggcagtcacggtggctcacgcctgtaattccagca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74223207 296 + 122973662 aatttattttctcacgttttattttctggatactggaagtccaagattaaa--gtctgtagggttggtttctcctgaggtctctctcct------tggctcacaggcagccgctttctgactatgtcctcatatgaacttttctctgtgcacatgcac---------ctctaatgtctcttctgcttcttataaggacaccagtattatcagcttagggcctcactcttatgacatcatttatccttaattgttatccttgtaaagatcc-tatctccaGGCAGTcgcggtggctcacacctgtaattccagca
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171444505 282 - 171630274 tatttattttctcacattttattttctggatactagaagtccaagatcgaagagtctgcagcgtcattttcccctgaggtctttctcctgaggtctgtcccgcagacagacgccttctgagtatgtcctcacatgaccttttgtctgtgcacatgcac---------ttctggtggctcttcctcttc---taaggacaccagtactgtcagcatagggcctcagtctt-------------------attattgaccctgtaaagatcc-tatctccaggcaggctcggtgtctcatgcctgtaattccagca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            269391 276 -    375362 aacttattttctcacattttattttctggatactagaagtccaagatcaaagagtctgcagggttggtttcccctgaggtctctctcct------tggcccgcagacagccgccttctgagtatgtcctcacatgaccttttctctgtgcgcatgcac---------ctctggtggctcttcctcttcttataaggacaccagtactgtcagcttagggcctcagtctt-------------------actgt---ccctgtaaagatca-tatctccaagcaggctcagtgtctcatgcctgtaattctggca
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      267992 261 -    373274 aatttattttctcacattttattttctggatactagaagtccaagatcaaagagtctgcagggttgctttccctt-aggtctgtctcct------tggcccgcagacagccgccttctgagtatgtcctcacatgaccttttctctgtgcacatgcac---------ctctggtggctcttcctcttcttataaggacaccagtactgtcagcttagggccTCAGTCTT-------------------ATTAT------------------TGTCTCCAAGcaggctcgatgtctcatgcctataattctggca
i cebCap1.NW_016108108v1   I 3713 C 0
s aotNan1.NW_018494050v1      201061 289 -    285216 aatttattttctcacattttattttctggatactagaagtccaagaccaaagggtctgcagggttggtttcccctgaggtctctctcct------tggcccacagacagccgccttctgaatatgtcctcacgtgaccttttctctgtgcacaggcacagaccttttctctggtggctcttcctcttcttataaggacaccagtactgtcagcttagggcctcagtctt-------------------attattgtccctttaaagatcattatctccaggcaggctcggtgtctcatgcctgtaattctggca
i aotNan1.NW_018494050v1   I 5382 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25934801 435 +  26524999 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e colAng1.NW_012115566v1     1922069   0 -   3067355 C
e manLeu1.NW_012104165v1     2051543   0 +   2316924 C
e chlSab2.chr17             28357963   0 -  71996105 C
e cerAty1.NW_012001495v1     1918087   0 -   2157725 C
e macNem1.NW_012011356v1     2050921   0 -   2996164 C
e macFas5.chr4              29061148   0 - 170955103 C
e rheMac8.chr4              29400268   0 + 172585720 C

a score=53977.000000
s hg38.chr6_GL000254v2_alt    199163 12 +   4827813 atttgggaggcc
s panTro5.chr6              29186608 12 + 175400573 atttgggaggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29420657 12 + 173848474 atttgggaggcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5221357 12 +   6154872 atttgggaggcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74223503 12 + 122973662 atttgggaggct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29400268 12 + 172585720 atttgggaggct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29061148 12 - 170955103 atttgggaggct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2050921 12 -   2996164 atttgggaggct
i macNem1.NW_012011356v1   C 0 C 0
s calJac3.chr4             171444787 12 - 171630274 ctctgggagccc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            269667 12 -    375362 ctttgggagcct
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      268253 12 -    373274 ctttgggagcct
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      201350 12 -    285216 cttagggagccc
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25934801 435 +  26524999 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e colAng1.NW_012115566v1     1922069  0 -   3067355 C
e manLeu1.NW_012104165v1     2051543  0 +   2316924 C
e chlSab2.chr17             28357963  0 -  71996105 C
e cerAty1.NW_012001495v1     1918087  0 -   2157725 C

a score=2291951.000000
s hg38.chr6_GL000254v2_alt    199175 258 +   4827813 gaggcaggtgtatcacttggggctgggagttcaagaccagcctggccaatatggcaaaagcctgtctctactaaaaatacaaaaatcagctgggcatggtggtgcacacctgtaatcccagctactcaggaggctgagacaggagaatcacttgaactcaggaggcagaggttgcagtgagccaagattgaggcactgcactccagcctgggcagcagagcaaaactctatca-aaaaaaa----------------------------------aaaattatcttcaaatat
s panTro5.chr6              29186620 256 + 175400573 gaggcaggtgtatcacttggggctgggagttcaagaccagcctggccaatatggcaaaagcctgtctctactaaaaatacaaaaatcagctgggcatggtggtgcacatctgtaatcccagctactcaggaggctgagacaggagaatcacttgaactcaggaggcagaggttgcagtgagccaagattgaggcactgcactccagcctgggcagcagagcaaaactctatc---aaaaaa----------------------------------aaaattatcttcaaatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29420669 256 + 173848474 gaggcaggtgtatcacttggggctgggagttcaagaccagcctggccaatatggcaaaagcctgtctctactaaaaatacaaaaatcagctgggcatggtggtgcacacctgtaatcccagctactcaggaggctgagacaggagaatcacttgaactcaggaggcagaggttgcagtgagccaagattgaggcactgcactccagcctgggcagcagagcaaaactctatc---aaaaaa----------------------------------aaaattatcttcaaatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5221369 257 +   6154872 gaggcaggtgtatcacttagggctgggagttcaagaccagcctggccaatatggcaaaagcctgtctccactaaaaatacaaaaatcagctgggcatggtggtgcacacctgtaatcccagctactcaggaggctgagacaggagaatcacttgaactcaggaggcagaggttgcagtgagccaagattgaggcactgcactccagcctgggcagcagagcaaaactctatc--aaaaaaa----------------------------------aaaattatcttcaaatat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74223515 292 + 122973662 gaggcaggtgtatcacttggggctgggagttcaagaccagcctggccaacatggcgaaagcctgtctctactaaaaatacaaaaatcagccgggcgtggtggtgcacacctgtaatcccagctactcaggagcctgagacaagagaatcacttgaactcaggaggcggaagttgcagtgagccaagattgaggcactgcactccagcctgggcaacagagcaaaactctatct-aaaaaaataataataaaaaataaaataaaataaaataaaataaaactatcttcaaatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29400280 259 + 172585720 gaggcaggtgtatcacttggggctaggagttcaagactagcttggccaacatggcaaaagtctgtctctactaaaaatacaaatattagccgggtgtggtggcaggtacctgtaatcccagctactcaggaggctgagacaggagaatcgcttgaacccaggaggcggaggttgcagcaagccaagattgtgccactgcactccagcctgggcaacagagcaaaactctgaagaaaaaaaa----------------------------------aaaaTTCTCTTCAAATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29061160 259 - 170955103 gaggcaggtgtatcacttggggctaggagttcaagactagcttggccaacatggcaaaagtctgtctctactaaaaatacaaatattagccgggtgtggtggcaggtacctgtaatcccagctactcaggaggctgagacaggagaatcgcttgaacccaggaggcggaggttgcagcaagccaagattgtgccactgcactccagcctgggcaacagagcaaaactctgaagaaaaaaaa----------------------------------aaaaTTCTCTTCAAATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2050933 258 -   2996164 gaggcaggtatatcacttggggctaggagttcaagactagcttggccaacatggcaaaagtctgtctctactaaaaatacaaatattagccgggtgtggtggcaggtacctgtaatcccagctactcaggagactgagacaggagaatcgcttgaacccaggaggcggaggttgcagcaagccaagattgtgccactgcactccagcctgggcaacagagcaaaactctgaag-aaaaaaa----------------------------------aaaaTTCTCTTCAAATAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1918087 255 -   2157725 gaggcaggtgtatcacttggggctaggagttcaagaccagcttggccaacatggcaaaagtctgtctctactaaaaatacaaaaattagccgggtgtggtggcaggtacctgtaatcccagctactcaggaggctgagacaggagaatcacttgaacccaggaggcggaggttgcagcgagccaagattgtgccactgcact----cctgggcaacagagcaaaactctgaagaaaaaaaa----------------------------------aaaaTTGTCTTCAAATAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28357963 257 -  71996105 gaggcaggtgtatcacttggggctaggagttcaagactagcttggccaacatggcaaaagtctgtctctactaaaaatacaaaaattagccgggtgtggtagcaggtacctgtaatcccagctactcaggaggctgagacaggagaatcgctggaacccaggaggcggaggttgcagcgagccaagattgtgccactgcactccagcctgggcaacagagcaaaactctgaag--aaaaaa----------------------------------gaaaTTCTCTTCAAATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2051543 258 +   2316924 gaggcaggtgtatcacttggggctaggagttcaagaccagcttggccaacatggcaaaagtctgtctctactaaaaatacaaaaattagccgggtgtggtggcaggtacctgtaatcccagctactcaggaggctgagacaggagaatcacttgaacccagggggtggaggttgcaacgagccaagattgtgccactgcactccagcctgggcaacagagcaaaactctgaag-aaaaaaa----------------------------------aaaaTTGTCTTCAAATAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1922069 255 -   3067355 gaggcaggtgtatcacttggggctaggagttcaagaccagcttggccaacatggcaaaagtctgtctctactaaaaatacaaaaattagccgggtgtggtggcaggtacctgtaatcccagctactcaggaggctgagacaggagaatcgcttgaacctaggaggcggaggttgcagcgagccaagattgtgccactgcattccagcctgggcaacagagcaaaactctgaag----aaaa----------------------------------aaaaTTGTCTTCAAATAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171444799 254 - 171630274 aaggtaggtagatcacttgaggttgggagttcaagaccagc-tggccaacacagcgaagccctgtctctactaaaaatacaaaaatcagccaggtgtggtcgtgcacacctgtaatcccagctactcagaaggctgagacagaagaaacgcttgaacctgggaggtggaggttgcaatgagccaagattgcgccactgcactgtagcctgagtgacaaagcaaaactctgactcaaaaaaa----------------------------------aaaa----cttcaaatat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            269679 268 -    375362 gaggtaggtagatcacttgaggttgggagttcaagaccagc-tggccagcacagcgaagccctgtctctactaaaaatacaaaaatcagccaggtgtgctggtgcacacccataatcccagctactccgaaggctgagacaggagaaacgcttgaacctgggaggtgtaggtttcagtgagtcaagattgcgccactgcactgcagcctgagtgacaaagcaaaactctgactcaaaaaaagaaaagaaaaaaag--------------------aaaa----cttcaaatat
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      268265 249 -    373274 gaggtaggtagatcacttgaggttgggagttcaagaccagc-tggccaacactgcaaagccc--tctctactaaaaatacaaaaatcagccaggtgtggtggtgcacacccgtaatcccagctacttggaaggctgagacaggagaaacgcttgaacctgggaggtggaggttgcagtgagccaagatttcgccactgcactgcagcctgagtgacaaagcaaaactctgactcaaaa-------------------------------------aaaa----CTTCAAATAT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      201362 258 -    285216 aaggtaggtagatcacttgaggttgggggttcaagaccagc-tggccaacacagcgaagccctgtctctactaaaaatacaaaaatcagccaggtgtggtggtgcacacctgtaatcccagctacttggaaggctgagacaggagaaacgcttgaacctgggaggtggaggttgcagtgagccaagattgcaccactgcactgcagcctgagtgacaaagcaaaactctgactcaaaaaaaaaaa------------------------------aaaa----cttcaaatat
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25934801 435 +  26524999 I
e otoGar3.GL873742           1569794 563 -   2232465 I

a score=311658.000000
s hg38.chr6_GL000254v2_alt    199433 44 +   4827813 agtcacattgggggttaaaattccaaaacatgagttgggagCTG
s panTro5.chr6              29186876 44 + 175400573 agtcacattgggggttaaaattccaaaacatgagttgggagCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29420925 44 + 173848474 agtcacattgggggttaaaattccaaaacatgagttgggagCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5221626 44 +   6154872 agtcatattgggggttaaaattccaaaacatgagttgggagCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74223807 44 + 122973662 agtcacattgggggttaaaattccaaaacatgagttgggagCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29400539 44 + 172585720 AGTCACATTGGGGGTTAAAATTCCAAAACATGAGTTGGGAGCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29061419 44 - 170955103 AGTCACATTGGGGGTTAAAATTCCAAAACATGAGTTGGGAGCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2051191 44 -   2996164 AGTCACATTGGGGGTTAAAATTCCAAAACATGAGTTGGGAGCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1918342 44 -   2157725 AGTCACATTGGGGGTTAAAATTCCAAAACATGAGTTGGGAGCTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28358220 44 -  71996105 AGTCACATTGGGGGTTAAAATTCCAAAACATGAGTTGGGAGCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2051801 44 +   2316924 AGTCACATTGGGGGTTAAAATTCCAAAACATGAGTTGGGAGCTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1922324 44 -   3067355 AGTCACATTGGGGGTTAAAATTCCAAAACAGGAGTTGGGAGCTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171445053 25 - 171630274 agtc-cacatggggt------------------gttgggagctg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            269947 25 -    375362 agtc-cacatgaagt------------------gttgggagctg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      268514 25 -    373274 AGTC-CACATGAGGC------------------GTTGGGAGCTG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      201620 25 -    285216 agtc-cacatggggt------------------gttgggagctg
i aotNan1.NW_018494050v1   C 0 I 42
s canFam3.chr35             25935236 38 +  26524999 agtcacactgggggttagagctttagcatacgaacttg------
i canFam3.chr35            I 435 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I

a score=120036.000000
s hg38.chr6_GL000254v2_alt    199477 19 +   4827813 TGTGTATGT---GGTGGGCAGA
s panTro5.chr6              29186920 19 + 175400573 TGTGTATGT---GGTGGGCGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29420969 19 + 173848474 TGTGTATGT---GGTGGGCGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5221670 19 +   6154872 TGTGTATGT---GGTGGGCAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74223851 19 + 122973662 TGTGTATGT---GGTGGGCTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29400583 19 + 172585720 TGTGTATGT---GGTGGGCAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29061463 19 - 170955103 TGTGTATGT---GGTGGGCAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2051235 19 -   2996164 TGTGTATGT---GGTGGGCAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1918386 19 -   2157725 TGTGTATGT---GGTGGGCTGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28358264 19 -  71996105 TGTGTATGT---GGTGGGCAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2051845 19 +   2316924 TGTGTATGT---GGTGGGCTGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1922368 19 -   3067355 TGTGTATGT---GGTGGGCAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171445078 20 - 171630274 tgtgtgtgtgggggtgagga--
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            269972 17 -    375362 tgtgtatgt---ggtgggga--
i saiBol1.JH378348         C 0 I 1
s cebCap1.NW_016108108v1      268539 17 -    373274 TGTGTATGT---GGTGGGGA--
i cebCap1.NW_016108108v1   C 0 I 35
s canFam3.chr35             25935274  1 +  26524999 -----a----------------
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      201645 42 -    285216 I

a score=237584.000000
s hg38.chr6_GL000254v2_alt    199496 35 +   4827813 GTGGACACAACTCAGTCCATAGTGATGTCCACCTA
s panTro5.chr6              29186939 35 + 175400573 GTGGACACAACTCAGTCCATAGTGATGTCCACCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29420988 35 + 173848474 GTGGACACAACTCAGTCCATAGTGATGTCCACCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5221689 35 +   6154872 GTGGACACAACTCAGTCCATAGTGATGTCCACCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74223870 35 + 122973662 GTGGACACAACTCGGTCCATAGTGACGTCCAACTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29400602 35 + 172585720 GTGGACAGAACTTGGTCCATAATGATGTCCAACTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29061482 35 - 170955103 GTGGACAGAACTTGGTCCATAATGATGTCCAACTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2051254 35 -   2996164 GTGGACAGAACTTGGTCCATAATGATGTCCAACTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1918405 35 -   2157725 GTGGACACAACTTGGTCCATAATGATATCCAACTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28358283 35 -  71996105 GTGGACAGAACTTGGTCCATAATGATGTCCGACTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2051864 35 +   2316924 GTGGACACAACTTGGTCCATAATGACGTCCAACTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1922387 35 -   3067355 GTGGACACAACTTGGTCCGTAATGATGTCTAGCTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171445099 34 - 171630274 gtggacacaattcggcccataacGCTGTCTAACC-
i calJac3.chr4             I 1 C 0
s saiBol1.JH378348            269990 34 -    375362 atggacacaatttggcccataaTGCTGTCTATCC-
i saiBol1.JH378348         I 1 C 0
s canFam3.chr35             25935275 35 +  26524999 gaaggcacgattcagtctataacaACATTTGACTA
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      201645 42 -    285216 I
e cebCap1.NW_016108108v1      268556 35 -    373274 I

a score=2690769.000000
s hg38.chr6_GL000254v2_alt    199531 280 +   4827813 CTCTACTACGGGACTCCATAAGGGGGGAGTGAGCTCA-Ttgaggccatccttccagccattccctgagaaaagcatgaggattttcagtgaagagcagcccaactaccaaatggat---acattctgagttgccagttaatgccaggtgttacagaaaaatcatcccagtgagccctacctgTTGGGGCAGTTTGTTATGCAGTATGAAATAATCAGAATAAGGAGTTGCATTCAGTTATTAATCAAATCAATATGTGGTTACTAATTGTGACAACTTCTATGA
s panTro5.chr6              29186974 280 + 175400573 CTCTACTACGGGACTCCATAAAGGGGGAGTGAGCTCA-Ttgaggccatccttccagccattccctgagaaaagcatgaggattttcagtgaagagcagcccaactgccaaatggat---acattctgagttgccagttaatgccaggtgttacagaaaaatcatcccagtgagccctacctgTTGGGGCAGTTTGTTATGCAGTATGAAATAATCAGAATAAGGAGTTGCATTCAGTTATTAATCAAATCAATATGTGGTtactaattgtgaaaagttctatga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29421023 280 + 173848474 CTCTACTACGGGACTCCATAAAGGGGGAGTGAGCTCA-Ttgaggccatccttccagccattccctgagaaaagcatgaggattttcagtgaagagcagcccaactgccaaatggat---acattctgagttgccagttaatgccaggtgttacagaaaaatcatcccagtgagccctacctgTTGGGGCAGTTTGTTATGCAGTATGAAATAATCAGAATAAGGAGTTGCATTCAGTTATTAATCAAATCAATATGTGGTTACTAATTGTGAAAAGTTCTATGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5221724 280 +   6154872 CTCTACTACGGGACTCCATAAAGGGGGAGTGAGCTCA-TTGAGGCCATCCTTCCAGCCATTCCCTGAGAAAAGCATGAGGATTGTCAGTGAAGAGCAGCCCAACTGCCAAATGGAT---ACATTCTGAGTTGCCAGTTAATGCCAGGTGTTACAGAAAAATCATCCCAGTTAGCCCTACCTGTTGGGGCAGTTTGTTATGCAGTATGAAATAATCAGAATAAGGAGTGGCATTCAGTTATTAATCAAATAAATATGTGGTTACTAATTGtgacaagttctatga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74223905 280 + 122973662 CTCTACCACGGGACTCCATAAAGGGGGAGAGGGCTCA-ctgaggccatctttccagccattccctgacaaaagcatgaggattgtcagtgaagagcagcccaattgccaaatggat---acattctgaattgccagtcaatgccaggcgtaacagaaaaatcatcccagtgagccctacctgTTGGGACAGTTTATTATGCAGTATGAAATAATCAGAACAAGGAGTGGCATTCAGTTATTAATCAAATCAATATGTGGTTACTAATCGtgacaagtgctatga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29400637 279 + 172585720 CTCTACTATGCAACTCCATAAAAGGGGAGTGGGCTCA-ctgaggccatccttccagccattccctgacaaaagcatgaggattgtcaataaagagcagcccaattgccaaatggac---atattctgagtcgccagtcagtgccaggtgtaacagaaaaatcatcccagtgagccctacctgTTGGG-CAGTTTGTTATACAGTATGAAATAATCAGAACAAGGACTGGTATTCAGTTATTAATCAAATCAATATGTGGTTACTAATTGTGACAAGTGCTATGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29061517 279 - 170955103 CTCTACTATGCAACTCCATAAAAGGGGAGTGGGCTCA-ctgaggccatccttccagccattccctgacaaaagcatgaggattgtcaataaagagcagcccaattgccaaatggat---atattctgagtcgccagtcagtgccaggtgtaacagaaaaatcatcccagtgagccctacctgTTGGG-CAGTTTGTTATACAGTATGAAATAATCAGAACAAGGACTGGTATTCAGTTATTAATCAAATCAATATGTGGTTACTAATTGTGACAAGTGCTATGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2051289 279 -   2996164 CTCTACTATGCAACTCCATAAAAGGGGAGTGGGCTCA-ctgaggccatccttccagccattccctgacaaaagcatgaggattgtcaataaagagcagcccaattgccaaatggat---atattctgagtcgccagtcagtgccaggtgtaacagaaaaatcatcccagtgagccctacctgTTGGG-CAGTTTGTTATACAGTATGAAATAATCAGAACAAGGACTGGTATTCAGTTATTAATCAAATCAATATGTGGTTACTAATTGTGACAAGTGCTATGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1918440 279 -   2157725 CTCTACTATGCAACTCCATAAAAGGGGAGTGAGCTCA-ctgaggccatgcttccagccattccctgacaaaagcatgaggattgtcaatgaagagcagcccaattgccaaatggat---acattctgagtcactagtcagtgccaggtgtaacagaaaaatcatcccagtgagccctacctgTTGCG-CAGTTTGTTATACAGTATGAAATAATCAGAACAAAGACTGGCATTCAGTTATTAATCAAATCAATATGTGGTTACTAATTGTGACAAGTGCTATGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28358318 279 -  71996105 CTCTACTATGCGACTCCATAAAAGGGGAGTGGGCTCA-CTGAGGCCATCCTTGCAGCCATTCCCTGACAAAAGCATGAGCATTGTCAATAAAGAGCAGCCCAATTGCCAAATGGAT---ATATTCTGAGTCGCCAGTCAGTGCCAGGTGTAACAGAAAAATCATCCCAGTGAACACTACCTGTTGGG-CAGTTTGTTATACAGTATGAAATAATCAGAACAAGGACTGGCATTCAGTTATTAATCAAGTCAATATGTGGTTACTAATTGTGACAAGTGCTATGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2051899 279 +   2316924 CTCTACTATACGACTCCATAAAAGGGGAGTGAGCTCA-ctgaggccatgcttccagccattccctgacaaaagcatgaggattgtcaatgaagagcagcccaattgccaaatggat---acattctgagtcactagtcagtgccaggtgtaacagaaaaatcatcccagtgagccctacctgTTGCG-CAGTTTGTTATACAGTATGAAATAATCAGAACAAAGACTGGCATTCAGTTATTAATCAAATCAATATGTGGTTACTAATTGTGACAAGTGCTATGA
i manLeu1.NW_012104165v1   C 0 T 7229
s colAng1.NW_012115566v1     1922422 279 -   3067355 CTCTACTATGCGACTCCATAAAAGGGGAGTGGGCTCA-ctgaggccatccttccagccattccctgacaaaagcatgaggattgtcaatgaagagcagcccagttgccaaatggat---acattctgactcactagtcagtgccaggtgtaacagaaaaatcatcccagtgagccctacttgTTGGG-CAGTTTGTTATACAGTATGAAATAATCAGAACAAGGACTGGCATTCAGTTATTAATCAAATCAATATGTGGATACTAATTGTGACAAGTGCTATGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171445133 272 - 171630274 CTCTGCTATGGGACTCCTTAGAGGGGGAGCGGGGTCA-CTGAGGCCATCCTTCCAGCCACTCGCTGGCAAAAGCATGAGGATGGTTAATGAAGAGTAGCCCAGTTGCCAAATGGAT---ATGTTCTGAGTCGCCAGTCAGTGCCGGAAGTGACGGAAACATCACCCCAGTGAGCCCTACCTGTTGGGGCAGTTTGCT--------GGACATGATCAGAACAAGCAGTGGCGTTCAGTTACTACTGAAATCAGTGTGTGGCGCCTAATTGTGGCCACTGCTACCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            270024 280 -    375362 CTCTGCTGTGGGACTCCTTAGAGGGGGAGCGGGGTCA-ctgaggccatccttccagccattccctggcaaaagcatgaggattgtcaatgaagagtagcccaattgccaaatgggt---atgttctaagtctccagtcagtgccagatgtgacagaaaaatcaccccaatgagccctacctgTTGGGGCAGTTCGTTGTGCAGTAGGACATAATCAGAACAAGCAGTGGGATTCTATTACTACTCAAATCAATGTGTGGAGCCTAACTGTGGCAGGTGCTATGG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      268591 279 -    373274 CTCTGCTATGGGACTTCTTAGAGGGGGAGCGGGGTCA-ctgaggccatccttccagccattccctggcaaaa-tgtgaggattgtcaatgaagaataacccaattgccaaatggat---atgttctgagtcgccagttaatgccagatgtgacagaaaaatcacctcaatgagccctacctgTTGGGGCAGTTTGTCGTGCAGTAGTACATAATCAGAACAAGCAGTGGCGTTCTGTTGCTACTCAAATCAATGTGTGGTGCCTCATTGTGGCAAGTGCTATGG
i cebCap1.NW_016108108v1   I 35 C 0
s aotNan1.NW_018494050v1      201687 283 -    285216 ctctgctatgggactccttagaggggcagcggggtca-ctgaggccatccttccagccattccctggcaaaagcatgaggattgtcaatgaagagtagcccaattgccaaatggatatgatgttcagagtcgccagtcaatgccagatgtgacagaaaaatcaccccaatgagccctacctgTTGGGGCAGTTTGTTGTGCAGTAGGACGTAATCAGAACAAGCAGTGGTGTTCAGTTCCTACTCAAATCAGTGTGTGGTGCCTAACTGTGGCAAGTGCTACGG
i aotNan1.NW_018494050v1   I 42 C 0
s canFam3.chr35             25935310 255 +  26524999 CTCTACCATGGGACTCTAAAGAGGGGACAAGGGCTCAGCTGAGCCCATGTGTCTAGCCATTCCCTGACAAAGGCTTTAG----CTGAATGAAGAGCTACCCAACTGCCGCACAGCT---GCATTCTGA----CAGGTTGATGCCCG-TGCAGAAGCGAAGTCACCCCGATGAGCCCTGATTTGGGTG-TACTTTGTTACCTGGGATGAAATAATTATAATAAGGAGCAACATTAGGTAATCCGGCGAATCAGTATG-------TAATTGTGACCA---------
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I

a score=2694456.000000
s hg38.chr6_GL000254v2_alt    199811 275 +   4827813 TGGAAGAGACAGGATGCTATGAGAAAGAATAACACAGTGGGTGGGAATGGCATCACAAAC----TGCAAGGgagaaataattgaaggacctagag-at--gttgggcctgaagaagaTTTCAATGCTTTTGTGAGCTCTGGAACCATTTCTCTTCCCTTTCTGGGCTAAACTCCTTGAATAAGCGGATCCCTCCGCTTTCCTTGCAGGTGACC-ACTCCCTCCAGATCAGCCTCTCATAAAACTTTTCTCGTCTTCCCAGGTCACAACAATTTTTCCCTTTTT--
s panTro5.chr6              29187254 275 + 175400573 tggaagagacaggatgctatgagaAAGAATAACACAGTGGGTGGGAATGGCATCACGAAC----TGCAAGGgagaaataattgaaggacctagag-at--gttgggcctgaagaagaTTTCAATGCTTTTGTGAGCTCTGGAACCATTTCTCTTCCCTTTCTGGGCAAAACTCCTTGAATAAGCGGATTCCTCCGCTTTCCTTGCAGGTGACC-ACTCCCTCCAGATCAGCCTCTCATAAAACTTTTCCCGTCTTCCCAGGTCACAACAATTTTTCCCTTTTT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29421303 275 + 173848474 TGGAAGAGACAGGATGCTATGAGAAAAAATAACACAGTGGGTGGGAATGGCATCACGAAC----TGCAAGGgagaaataattgaaggacctagag-at--gttgggcctgaagaagaTTTCAATGCTTTTGTGAGCTCTGGAACCATTTCTCTTCCCTTTCTGGGCAAAACTCCTTGAATAAGCGGATTCCTCCGCTTTCCTTGCAGGTGACC-ACTCCCTCCAGATCAGCCTCTCATAAAACTTTTCCCGTCTTCCCAGGTCACAACAATTTTTCCCTTTTT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5222004 275 +   6154872 tggaagagacaggatgctatgagaAAGAATAACACAGTGGGTGGGAATGGCATCACGAAC----TGCAAGGgagaaataattgaaggacctagag-at--gttgggcctgaagaagaTTTCAATGCTTTTGTGAGCTCTGGAACCATTTCTCTTCCCTTTCTGGGCTAAACTCCTTGAATAAGCGGATTCCTCCGCTTTCCTTGCAGGTGACC-ACTCCCTCCAGATCAGCCTCTCATAAAACTTTTCCCGTCTTCCCAGGTCACAACAATTTTTCCCTTTTT--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74224185 272 + 122973662 tggaagagacaggatgctatgagaAAGAATAACACAGTGGGTGGGAATGGCATCCCGAAC----TGCAAGGGAGAAATAAATGAAGGACCTAGAG-AT--GTTGGGCCT---GAAGATTTCAGTGCTTTTATGAGCTCTGGAACCATTTCTCTTCCCTTTCTGGGCTAAACTCCTTGAATAAGCAGATGCCTCTGCTTTCCTTGCAGGTGACC-ACTCCCTCCAGATCAGCCTCTCATAAAACTTTTCCCATCTTCCCAGGTCACAACAATTTTTCCCTTTTT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29400916 279 + 172585720 AGGACGAGACAGGATGCTATGAAAAAGAATAACACAGTGGGTGGGAATGGCATCCCTAACTAGTTGCAAGGgagaaataattgaaggacctagag-at--gttgggcctgaggaagaTTTCAATGCTTTTGTGAGCTCTGGAACCATTTCTCTTCCCTTTTTGAGCTAAACTCCTTGAATAAGCAGGTGCCTCCGCTTTCCTTCCACGTGACC-ACTCCCTCCAGATCAGCCTCTCATAAAACTTTTCCCATCTTCCTAGGTCACAGCAATTTTTCCCTTTTT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29061796 279 - 170955103 AGGACGAGACAGGATGCTATGAAAAAGAATAACACAGTGGGTGGGAATGGCATCCCTAACTAGTTGCAAGGgagaaataattgaaggacctagag-at--gttgggcctgaggaagaTTTCAATGCTTTTGTGAGCTCTGGAACCATTTCTCTTCCCTTTCTGAGCTAAACTCCTTGAATAAGCAGGTGCCTCCGCTTTCCTTCCACGTGACC-ACTCCCTCCAGATCAGCCTCTCATAAAACTTTTCCCATCTTCCTAGGTCACAGCAATTTTTCCCTTTTT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2051568 279 -   2996164 AGGACGAGACAGGATGCTATGAAAAAGAATAACACAGTGGGTGGGAATGGCATCCCTAACTAGTTGCAAGGgagaaataattgaaggacctagag-at--gttgggcctgaggaagaTTTCAATGCTTTTGTGAGCTCTGGAACCATTTCTCTTCCCTTTCTGAGCTAAACTCCTTGAATAAGCAGGTGCCTCCGCTTTCCTTCCACGTGACC-ACTCCCTCCAGATCAGCCTCTCATAAAACTTTTCCCATCTTCCTAGGTCACAGCAATTTTTCCCTTTTT--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1918719 275 -   2157725 AGGACGAGACAGGATGCTATGAGAAAGAATAACACAGTGGGTGGGAATGGCATCCCTAAC----TGCAAGGGAGAAATAATTGAAGGACCTAGAC-AT--GTTGGGCCTGAGGAAGATTTCAATGCTTTTGTGAGCTCTGGAACTATTTATCTTCCCTTTCTGGGCTAAACTCCTTGAATAAGCAGGTGCCTCTGCTTTCCTTCCATATGACC-ACTCCCTCCAGATCAGCCTCTCATAAAGCTTTTCCCATCTTCCCAGGTCACAGCAATTTTTCCCTTTTT--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28358597 276 -  71996105 AGGACGAGACAGGATGCTATGAGAAAGAATAACACAGTGAGTGGGAATGGCATCCCTAACTAGTTGCAAGGGAGAAATAATTGAAAGACCTAGAG-AT--GTTGGGCCTGAGGAAGATTTCAATGCTTTTGTGAGCTCTGGAACCATTTCTCTTCCCTTTCTGGGCTAAA---CTTGAATAAGCAGGTGCCTCCGCTTTCCTTCCACGTGACC-ACTCCCTCCAGATCAGCCTCTCATAAAACTTTTCCCATCTTCCTAGGTCACAGCAATTTTTCCCTTTTT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2044949 275 +   2316924 AGGATGAGACAGGATGCTATGAGAAAGAATAACACAGTGGGTGGGAATGGCATCCGTAAC----TGCAAGGGAGAAATAATTGAAGGACCTAGAC-AT--GTTGGGCCTGAGGAAGATTTCAATGCTTTTGTGAGCTCTGGAACTATTTCTCTTCCCTTTCTGGGCTAAACTCCTTGAATAAGCAGGTGCCTCTGCTTTCCTTCCATATGACC-ACTCCCTCCAGATCAGCCTCTCATAAAACTTTTCCCATCTTCCCAGGTCACAGCAATTTTTCCCTTTTT--
i manLeu1.NW_012104165v1   T 7229 C 0
s colAng1.NW_012115566v1     1922701 271 -   3067355 AGGATGAGACAGGATGCTATGAGAAAGAATAACAC----GGTGGGAATGGCATCCCTAAC----TGCAAGGgagaaataattgaaggacctagag-at--gttgggcctgaggaagaTTTCAATGTTTTTGTGAGCTCTGGAACTATTTCTCTTCCCTTTCTGGGCTAAACTCCTTGAATAAGCAGGTGCCTCTGCTTTCCTTCCACGTGACC-ACTCCCTCCAGATCAGCCTCTCATAAAACTTTTCCCATCTTCCCAGGTCACAGCAATTTTTCCCTTTTT--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171445405 243 - 171630274 AGGAAGAGAGAGGACGCTATGCGGAAGAGTAACACAAGGAGTGGGAGCGGCGTCCCGAAC----TGCAAGGGCgaaatggttgaaggacctggag-at--gctgggcctgaagaagaTGTCGATGCGTT-GTGAGCTCTGGAGCCATTTCTCTTCCCTTTCTGGGCTAA---CCTCGAATGAGCAGATGCGGCCGCTTTCCTTTGAGGTGACC-ACTCCCTCCAGATCAGCCTCTCGTAAGAA---GTCCATCTTCCC---------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            270304 270 -    375362 AGGATGAGACAGGATGCTATGTGAAAGAATAACAC--TGAGTGGGAACGGCATCCCGAAC----TGCAAGGAagaaatgatggaaggacctggag-at--gttgggcctgaagaagaTGTCAATGCTTTCGTGAGCTCTGGAACCATTTCTCTTCCCTTTCTGGGCTAA---ACTCAGAAAAGCAGATGCGGCCGCTTTCCTTGCAGGTGACC-ACTCCCTCCAGATCAGCCTCTCATAAGACTTTTTCCATCTTCCCAGGTCACAACAGCTTCTCCCTTTTT--
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      268870 277 -    373274 AGGAAGAGACAGGATGCTATGCGAAAGAATAACACAATGAGTGGGAACGGCATCCCGAAC----TGCAAGGGAGAAATGATTGAAGGACCTGGAG-ATTGAATGGGCCTGAAGAAGATGTCAATGCTTTTGTGAGCTCTGGAACCATTTCTCTTTCCTTTCTGGGCTAAACTCCTCGGAAAAGCAGATGTGGCCGCTTTCCTTGCAGGTGACC-ACTCCCTCCAGATCAGCCTCTCATAAGACTTTTTCCGTCTTCCCAGGTCACAACAACTTCTCCCTTTTT--
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      201970 272 -    285216 AGGAAGAGACAGGATGCTATGCAAAAGAATAACACGGTGAGTGGGAACGGCATCCCGAAC----TGCAAGGgaggaatgattgaaggacctggag-at--gttgggcct---gaagaTGTCAATGCTTTTGTGAGCTCTGGAACCATTTCTCTTCCCCTTCTGGGCTAAACTCCTCGGATAAGCAGATGCAGCCGCTTTCCTTGCAGGTGACC-ACTCCCTCCAGATCAGCCACTCATAAGACTTTTTCCATCTTCCCAGGTCACAACAACTTCTCCCTTTTT--
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25935565 234 +  26524999 --------TCAGGA--------------------------GTAGGAGTGACACTCTGGA-----TGGAAAGAAGAAATCATCCAAGGACCCGGAATGC--ACTGGGCCT---GAAGGTTACACCACCGTTTTGAGCTCCGGGACTGTTTCTCTTTTGTTTCTGTGCTGAA---CTTGAATAAGCAGTTGCCCCTGCTCTCCTAGCAGTTGACCTGCTTCCTCAGATTCAGCCTCTCAAAAACCTTT----ATCTTCCCAAGATACAACAATTCCTCTCTTCTTGT
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I

a score=2166814.000000
s hg38.chr6_GL000254v2_alt    200086 241 +   4827813 AACATtgtattaggctgtgcctgcactgctgtaaagaaatacctgagggccgggtgcagtggctcacacctgtaatcccagtactttgggaggctgaggcttgcggatcacttgaggtcaggagtttgagaccagcctggccaacatagtgaaacgctgtctctactaaaaatataaaaaaattagctgtgtgtggtggcgtgtgcctgtaatcctagctacttgggaagctgaggcagga
s panTro5.chr6              29187529 241 + 175400573 AACATtgtattaggctgtgcctgcactgctgtaaagaaatacctgagggccgggtgcagtggctcacacctgtaatcccagcactttgggaggctgaggcttgcggatcacttgaggtcaggagtttgagaccagcctggccaacatagtgaaacgctgtctctactaaaaatataaaaaaattagccgtgtgtggtggcgtgtgcctgtaatcctagctacttgggaagctgaggcagga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29421578 241 + 173848474 AACATtgtattaggctgtgcctgcactgctgtaaagaaatacctgagggccgggtgcagtggctcacacctgtaatcccagcactttgggaggctgaggcttgcggatcacttgaggtcaggagtttgagaccagcctggccaacatagtgaaacgctgtctctactaaaaatataaaaaaattagccgtgtgtggtggcgtgtgcctgtaatcctagctacttgggaagctgaggcagga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5222279 240 +   6154872 AACATtgtattaggctgtgcctgcactgctgtaaagaaatacctgagggccgggtgcagtggctcacacctgtaatcccagcactttgggaggctgacgcttgtggatcacttgaggtcaggagtttgagaccagcctggccaacatagtgaaacgctgtctctactaaaaatattaaaaaattagccgtgtgtggtggcgtgtgcctgtaatcccagctactt-ggaggctgagacagga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74224457 240 + 122973662 AACATtgtattaggctatgcctgcactgctataaagaaatacctgagggccgggtgcggtggctcacacctgtaatcccagcactttgggaggctgaggtgggcggatcacttgaggtcaggagtttgagaccagcctggccaacacagtgaaacgctgtctctactaaaaatat-aaaaaattagtcatgtgtggtggtgtgtgcctgtaatcctagctacttgggaagctgagAAAAGA
i nomLeu3.chr1a            C 0 I 109
s rheMac8.chr4              29401195 239 + 172585720 AACATtgtattaggctgtgcctgcactgctataaagaaatacctgagggccaggtgtggtggctcacgcctgtaatgccagcactttgggaggctgaggtgggcggatcacttgaggtcaggagtttgagaccagcctggccaacatagtgaaacg-cgtctctactaaaaatat-aaaaagttagctgtgtgtggtggcacatgcctgtaatcccagctacttgggaagctaaggcagga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29062075 240 - 170955103 AACATtgtattaggctgtgcctgcactgctataaagaaatacctgagggccaggtgtggtggctcacgcctgtaatgccagcactttgggaggctgaggtgggcggatcacttgaggtcaggagtttgagaccagcctggccaacatagtgaaacgccgtctctactaaaaatat-aaaaagttagctgtgtgtggtggcacatgcctgtaatcccagctacttgggaagctaaggcagga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2051847 240 -   2996164 AACATtgtattaggctgtgcctgcactgctataaagaaatacctgagggccaggtgtggtggctcacgcctgtaatgccagcactttgggaggctgaggtgggcggatcacttgaggtcaggagtttgagaccagcctggccaacatagtgaaacgccatctctactaaaaatat-aaaaagttagctgtgtgtggtggcacatgcctgtaatcccagctacttgggaagctaaggcagga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1918994 240 -   2157725 AACATtgtattaggctgtgcctgcactgctataaagaaatatctgagggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggcggatcacttgaggtcaggagtttgagaccagcgtggccaacgtagtgaaacgccgtctctactaaaaatat-aaaaagttagccgtgtgtggtggcacatgcctgtaatcccagctacttgggaagctaaggcagga
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28358873 240 -  71996105 AACATtgtattaggctgtgcctgcactgctataaagaaatacctgagggccgggtgtggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggcggatcacttgaggtcaggagtttgagaccagcctggccaacatagtgaaacgccgtctctactaaaaatat-aaaaagttagctgtgtgtggtggcacatgcctgtaatcccagctacttgggaagctaaggcagga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2045224 240 +   2316924 AACGTtgtattaggctgtgcctgcactgctataaagaaatatctgagggccggatgcggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggcggatcacttgaggtcaggagtttgagaccagcgtggccaacgtagtgaaacgccgtctctactaaaaatat-aaaaagttagccgtgtgtggtggcacatgcctgtaatcccagctacttgggaagctaaggcagga
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1922972 239 -   3067355 AACATtgtattaggctgtgcctgcactgctataaagaaatacctgagggccaggtgcagtggctcacgcctgtaatcccagcactttgggaggctgaggtgggcggatcacttgaggtca-gagtttgagaccagcatggccaacatagtgaaacgccatctctactaaaaatat-aaaaagttagccgtgtgtggtggcacatgcctgtaatcccagctacttgggaagctaaggcagga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171445648 190 - 171630274 -----------------------------------------------Tgccgggtgcggtggctcaagcctgtaatcccagcactttgggaggccgaggcgggtggatcac--gaggtcaaaagatcgagaccatcctggtcaacatggtgaaaccccgtctctactaaaaata--caaaaattagctgggcatggtggcgcgtgcctgtaatcccagctactcgggaggctgaggcagga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            270574 236 -    375362 AACGTCACattaggctgtgcatgcactgccatgaagacatacctgagggtcgggcacggagg-tcacgcctgcaatcccagcactttgggaggccaaggcaggcggatcacctgaggtcaggcgtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaa--a--aaaaaatcagccaggtgtggtggtgcatgcctgtaatcccagccacttggaaggctgaggcagga
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      269147 232 -    373274 AACGTCACattaggctgtgcatgcactgccacgaagacatacctgagggcc-ggcgtggagg-tcacgcctgcaatcccagcactttgggaggccaagtcaggcggatcacctgaggtcaggcatttgagaccatcctggccaacatggtgaaaccccgtctctactaaaa-------aaaatcagccaggtgtggtggtgcatgcctgtaatcccagccacttggaaggctgaggcagga
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      202242 235 -    285216 AACGTCATATTAGGCTGTGCATGCACTGCCATGAAGACATACCTGAGGGCTGGGCgc------tcacgtctgcaatcccagcactttgggaggccaaggcaggcggatcacttgaggtcaggcgtttgagaccagcctggccaacatggtgacaccccgtctctactaaaaatattaaaaaatcagccaggtgtggtggtgcatgcctgtaatcccagccacttggaaggctaaggcagga
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25935799   0 +  26524999 C
e otoGar3.GL873742           1569794 563 -   2232465 I

a score=708165.000000
s hg38.chr6_GL000254v2_alt    200327 101 +   4827813 gaatcgcttgaacctgggaggtggaagttgccgtgagccaagattgtgtc---actgtac----tccagccttggcaacacggagagagactccatctcaaaacaaaa
s panTro5.chr6              29187770 101 + 175400573 gaatcgcttgaacctgggaggtggaagttgccgtgagccaagattgtgtc---actgtac----tccagccttggcaacacggagagagactccatctcaaaacaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29421819 101 + 173848474 gaatcgcttgaacctgggaggtggaagttgccgtgagccaagattgtgtc---actgtac----tccagccttggcaacacggagagagactccatctcaaaacaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5222519 100 +   6154872 gaactgcttgaacccgggaggcggagcttgcagtgagccaagacagcact---attgcac----tccagcctgggcaaca-agagagaaactccgtctgaaaacaaaa
i gorGor5.CYUI01015250v1   C 0 I 139
s rheMac8.chr4              29401434 105 + 172585720 gaatcgctggaacttgggaggcagaggttgcagtgagccgagattgtgtc---actgtactccatccagccttggcaacacagagagagactccgtctcaaaacaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29062315 103 - 170955103 gaattgctggaacttgggaggcggaggttgcagtgagccgagattgtgtc---actgtactccatccagccttggcaacacagag--agactccgtctcaaaacaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2052087 100 -   2996164 gaattgctggaacttgggaggcggaggttgcagtgagccgagattgtgtc---actgtactccatccagccttggcaacacagagacagactccgtct-----caaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1919234  94 -   2157725 gaatcgctggaacctgggaggcggaggttgcagtgagccgagattgtgtc---actgtac----tccagccttggcaacagagag--agactccgtct-----caaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28359113  95 -  71996105 gaatcgctggaacctgggaggcggaggttgcagtgagccgagattg---------tgtac----tccagccttggcaacacagagagagactccgtctcaaaacaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2045464  99 +   2316924 gaatcgctggaacctgggaggcggaggttgcagtgagccgagattgtgtc---actgtac----tccagccttggca--acagagagagactccgtctcaaaacaaaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1923211 101 -   3067355 gaatcgctggaacctgggaggcggaggttgcagtgagccgagattgtgtc---actgtac----tccagccttggcaacacagagagagactctgtctcaaaacaaaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171445838 100 - 171630274 gaattgcctgaacccaggaggcggaggttgcggtgagccgagatcgcgcc---attgcac----tccagcctgggtaaca-agagcaaaactccgtctcaaaaaaaga
i calJac3.chr4             C 0 I 390
s saiBol1.JH378348            270810 104 -    375362 gaatcgcttgaacccgggaagcggaggttgcagtgagccgagattgcgccactactgcac----ttcagcctgggcgacagagaaagagactctgttttaaaaagcaa
i saiBol1.JH378348         C 0 I 10
s cebCap1.NW_016108108v1      269379  96 -    373274 gaatcgcttgaacccgggagatggaggttgcggtgagccgaaattgtgcc---actgcac----tccagcctgggtgacagagaaagagactccgtttcaaaa-----
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      202477 101 -    285216 gaatcgcttgaacccgggaggcggaggttgcagtgagccgagactgcgcc---actgcac----tccagcctgggcgacagaaaaagagactctgtttcaaaaaaaaa
i aotNan1.NW_018494050v1   C 0 I 8
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25935799   0 +  26524999 C
e otoGar3.GL873742           1569794 563 -   2232465 I
e nomLeu3.chr1a             74224697 109 + 122973662 I

a score=4500.000000
s hg38.chr6_GL000254v2_alt    200428 1 +   4827813 c
s panTro5.chr6              29187871 1 + 175400573 c
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29421920 1 + 173848474 c
i panPan2.chr6             C 0 C 0
s rheMac8.chr4              29401539 1 + 172585720 c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29062418 1 - 170955103 c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2052187 1 -   2996164 c
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1919328 1 -   2157725 c
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28359208 1 -  71996105 c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2045563 1 +   2316924 c
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1923312 1 -   3067355 c
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25935799 0 +  26524999 C
e saiBol1.JH378348            270914 10 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      202578 8 -    285216 I
e cebCap1.NW_016108108v1      269475 0 -    373274 C
e calJac3.chr4             171445938 390 - 171630274 I
e nomLeu3.chr1a             74224697 109 + 122973662 I
e gorGor5.CYUI01015250v1     5222619 139 +   6154872 I

a score=11473.000000
s hg38.chr6_GL000254v2_alt    200429 5 +   4827813 -aaaac
s panTro5.chr6              29187872 5 + 175400573 -aaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29421921 5 + 173848474 -aaaac
i panPan2.chr6             C 0 C 0
s rheMac8.chr4              29401540 5 + 172585720 -aaaac
i rheMac8.chr4             C 0 I 10
s macFas5.chr4              29062419 5 - 170955103 -aaaac
i macFas5.chr4             C 0 I 10
s macNem1.NW_012011356v1     2052188 5 -   2996164 -aaaac
i macNem1.NW_012011356v1   C 0 I 10
s cerAty1.NW_012001495v1     1919329 5 -   2157725 -aaaac
i cerAty1.NW_012001495v1   C 0 I 3
s chlSab2.chr17             28359209 5 -  71996105 -aaaac
i chlSab2.chr17            C 0 I 10
s colAng1.NW_012115566v1     1923313 5 -   3067355 -aaaac
i colAng1.NW_012115566v1   C 0 I 3
s calJac3.chr4             171446328 5 - 171630274 gagaa-
i calJac3.chr4             I 390 C 0
s saiBol1.JH378348            270924 5 -    375362 aaaaa-
i saiBol1.JH378348         I 10 C 0
s cebCap1.NW_016108108v1      269475 5 -    373274 aaaag-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      202586 5 -    285216 aaaag-
i aotNan1.NW_018494050v1   I 8 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25935799 0 +  26524999 C
e otoGar3.GL873742           1569794 563 -   2232465 I
e manLeu1.NW_012104165v1     2045564 0 +   2316924 C
e nomLeu3.chr1a             74224697 109 + 122973662 I
e gorGor5.CYUI01015250v1     5222619 139 +   6154872 I

a score=947525.000000
s hg38.chr6_GL000254v2_alt    200434 126 +   4827813 aaaaaaagagaaatacctgagactgggtaatttataagaaaagagttttaattggctcatgattctgcaggctgtacaggaagcacagtggcagctgcttctgcagaggccttgggaaacttccgg-----
s panTro5.chr6              29187877 126 + 175400573 aaaaaaagagaaatacctgagactgggtaatttataagaaaagagttttaattggctcatgattctgcaggctgtgcaggaagcacagtggcagctgcttctgcagaggccttgggaaacttccgg-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29421926 125 + 173848474 -aaaaaagagaaatacctgagactgggtaatttataagaaaagagttttaattggctcatgattctgcaggctgtacaggaagcacagtggcagctgcttctgcagaggccttgggaaacttccgg-----
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74224806 126 + 122973662 AAAAAAagagaaatacctgagactgggtaatttataagaaaagagttttaattggctcatgattctgcaggctgtacaggaagcacagtggcagctgcttctgcagaggccttgggaaacttctgg-----
i nomLeu3.chr1a            I 109 C 0
s rheMac8.chr4              29401555 124 + 172585720 aaaaaaagagagacacctgagactgcgtaattt-taagaaaag-gtgttaattggttcatgattctgcaggttatacaggaagcatagtggcagctgcttctgcagaggccttgggaaacttctgg-----
i rheMac8.chr4             I 10 I 4
s macFas5.chr4              29062434 125 - 170955103 aaaaAAggagagacacctgagacggcataattt-taagaaaagagtgttaattggttcatgattctgcaggttatacaggaagcatagtggcagctgcttctgtagaggccttgggaaacttCTGG-----
i macFas5.chr4             I 10 I 5426
s macNem1.NW_012011356v1     2052203 124 -   2996164 aaaaaaagagagacacctgagactgcgtaattt-taagaaaagagtgttaattggttcatgattctgcaggttatacaggaagcatagtggcagctgcttctgcagaggccttgggaaacttctg------
i macNem1.NW_012011356v1   I 10 I 6
s cerAty1.NW_012001495v1     1919337 119 -   2157725 -------gagaaacacctgagactgcgtaatttataagaaaagagtgttaattggttcatgattctgcgggttgtacaggaagcatagtggcagctgcttctgcagaggccttgggaaacttCTGG-----
i cerAty1.NW_012001495v1   I 3 I 2
s chlSab2.chr17             28359224 125 -  71996105 aaaaAAAGAGAAAcacctgagactgcataattt-taagaaaagagtgttaattggttcatgattctgcaggttgtacaggaagcatagtggcagctgcttctgcagaggccttgggaaacttCTGG-----
i chlSab2.chr17            I 10 C 0
s manLeu1.NW_012104165v1     2045564 122 +   2316924 ----aaagagaaacacctgagactgcgtaatttataagaaaagagtgttaattggttcatgattctgcgggttgtacaggaagcatagtggcagctgcttctgcagaggccttgggaaacttctgg-----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1923321 117 -   3067355 ---------gaaacacctgagactgcgtaatttataagaaaagagtgttaattggttcatgattctgcgggttgtacaggaagcatagtggcagctgcttctgcagaggtcttgggaaacttctgt-----
i colAng1.NW_012115566v1   I 3 I 2
s calJac3.chr4             171446333 130 - 171630274 aGAAAGaaaaaaaaccccgagactaggtaatttataagaaaagagatctaattggctaatgggtctgcaggctatacaggaagcatggtggcagctgtttctgcagaggccttgggaaacttaTG-TTTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            270929 131 -    375362 acaaaaaaaaaaacccctgcaactaggtaatttataagaaaagagatttaattggctaatgggtctgcaggctatacagcaagcatagtggcagctgtttctgcagagaccttgggaaacttatgttttta
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      269480 131 -    373274 aaagaaagaaaaatacctgcgactaggtaatttataagaaaagagatttaattggctaatgggtctgcaggctatacaggaagcatagtggcagctctttctgcagaggccttgggaaacttatgtttttg
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      202591 127 -    285216 aaaaaGGaaaaaaaacctgagactaggtaatttataagaaaagagatttaattggctaatggatctgcaggctatacgggaagcacagtggcagctgtgtctgcagaggccttgggaaacttacg----tg
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25935799   0 +  26524999 C
e otoGar3.GL873742           1569794 563 -   2232465 I
e gorGor5.CYUI01015250v1     5222619 139 +   6154872 I

a score=10552.000000
s hg38.chr6_GL000254v2_alt    200560 8 +   4827813 gttttttg
s panTro5.chr6              29188003 8 + 175400573 gttttttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29422051 8 + 173848474 gttttttg
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74224932 8 + 122973662 gttttgtt
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28359349 3 -  71996105 -----GTG
i chlSab2.chr17            C 0 I 21
s manLeu1.NW_012104165v1     2045686 3 +   2316924 -----gtg
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171446463 8 - 171630274 tttgtttg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            271060 8 -    375362 tttgtttg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      269611 8 -    373274 tttgtttg
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      202718 8 -    285216 tttttttg
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25935799 0 +  26524999 C
e otoGar3.GL873742           1569794 563 -   2232465 I
e colAng1.NW_012115566v1     1923438 2 -   3067355 I
e cerAty1.NW_012001495v1     1919456 2 -   2157725 I
e macNem1.NW_012011356v1     2052327 6 -   2996164 I
e macFas5.chr4              29062559 5426 - 170955103 I
e rheMac8.chr4              29401679 4 + 172585720 I
e gorGor5.CYUI01015250v1     5222619 139 +   6154872 I

a score=535641.000000
s hg38.chr6_GL000254v2_alt    200568 148 +   4827813 -----ttttgttttg-ttttttttcagacggagtttctctct-tgttgcccaggctggagtgcaatagtgctgtcttggctcactgcaagctccgcctcccgggttcaagcagttctcctgtctcagcct-ccaagtagctgggattacaggcgtg
s panTro5.chr6              29188011 147 + 175400573 -----ttttgtttt--ttttttttcagacggagtttctctct-tgttgcccaggctggagtgcaatagggctgtcttggctcactgcaagctccgcctcccgggttcaagcagttctcctgtctcagcct-ccaagtagctgggattacaggcgtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29422059 146 + 173848474 -----ttttgttt---ttttttttcagacggagtttctctct-tgttgcccaggctggagtgcaatagtgctgtcttggctcactgcaagctccgcctcccgggttcaagcagttctcctgtctcagcct-ccaagtagctgggattacaggcgtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5222758 151 +   6154872 -----ttttgttttgttttgttttgaggtggagtctctctctgtgttgccaaggctggagtacagtgacacaatcttggctcacggcaacttccacctcccaggttcaagcgattctcctgcctcagcttcccaggtagctaggattacaggcgtg
i gorGor5.CYUI01015250v1   I 139 C 0
s nomLeu3.chr1a             74224940 145 + 122973662 -----ttttgtt----ttttttttcaaacggagtttctctct-tgttgcccaggctggagtgcaatagcactgtcttggctcactgcaacctccacctcccaggttcaggcaattctcctctctcagctt-ccaagtagctgggattacaggcgtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29401683  73 + 172585720 -----ttttttttt--ttttttttgagacggggtttcgctct-tg-tgcgca-gctggagtgcaatggcgctgtcctggctca-------------------------------------------------------------------------
i rheMac8.chr4             I 4 C 0
s macNem1.NW_012011356v1     2052333  75 -   2996164 -----ttttgtttt--ttttttttgagacagggtttcgctct-tgttgcgcaggctggagtgcaatggcgctgtcctggctca-------------------------------------------------------------------------
i macNem1.NW_012011356v1   I 6 C 0
s cerAty1.NW_012001495v1     1919458  75 -   2157725 -----Gtttttttt--tttttttcgagacggggtttcgctct-tgttgcgcaggctagagtgcaatggcgctgtcttggctca-------------------------------------------------------------------------
i cerAty1.NW_012001495v1   I 2 C 0
s chlSab2.chr17             28359373  75 -  71996105 -----ttttttttt--ttttttttgagatggggtttcgttct-tgttgtgcaggctggagtgcaatggcgctgtcttggctta-------------------------------------------------------------------------
i chlSab2.chr17            I 21 C 0
s manLeu1.NW_012104165v1     2045689  74 +   2316924 ------tttttttt--tttttttcgagacggggtttcgctct-tgttgcgcaggctggagtgcaatggcgctgtcttggctca-------------------------------------------------------------------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1923440  74 -   3067355 -----gtgtgtttt--tttttttcgagac-gggtttcgctct-tgttgcgcaggctggagtgcaatggcgctgtcttggctca-------------------------------------------------------------------------
i colAng1.NW_012115566v1   I 2 C 0
s calJac3.chr4             171446471 152 - 171630274 tttgtttttgattt--tgttttttgagatggaattttgctct-tgttgcccaggctggagtgcgatggtgacttctcggctcactgcaacctctgcttcccgagttcaagcaattctcctgcctcag-ctcccgagttgctgggattacaggaatg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            271068 153 -    375362 tttgtttttgattt--tgttttttgagatggaattttgctct-tgttgcccaggctggagtgcaatggtgccttctcacctcactgcatcctctgcctcccgagttcaagcaattctcctgcctcagcctcctgagttgctgggattacaggcatg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      269619 153 -    373274 tttgtatttgattt--tgttttttgagatggaattttgctct-tgttgctcaggctgcagtgcaatggtgccttcttggctcactgtatcctctgcctcccgagttcaagcaattctcctgccccagccttccgagttgctgggattacaggcatg
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      202726 153 -    285216 tttgtttttgattt--tgttttttgagatggaattttgctct-tcttgcccaggctggagtgcaatggtgccttctcggctcactgcaacctctgcctcccgagttcaagcaattctcctgcctcagcctcccgagttgccagggttacaggcatg
i aotNan1.NW_018494050v1   C 0 I 13
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25935799   0 +  26524999 C
e otoGar3.GL873742           1569794 563 -   2232465 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=99582.000000
s hg38.chr6_GL000254v2_alt    200716 26 +   4827813 caccaccgcgcttgtccaattttgta
s panTro5.chr6              29188158 26 + 175400573 caccaccgcgcttgtccaattttgta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29422205 26 + 173848474 caccaccgcgcttgtccaattttgta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5222909 26 +   6154872 caccaccgcgcttgtccaattttgta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74225085 26 + 122973662 caccacaacacctggctaattttgta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29401756 23 + 172585720 ---caccacacctggctaagtttgtg
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2052408 23 -   2996164 ---caccacacctggctaattttgtg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1919533 23 -   2157725 ---caccacacctggctaattttgta
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28359448 23 -  71996105 ---caccacgcctggctaattttgta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2045763 23 +   2316924 ---caccacacctggctaattttgta
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1923514 23 -   3067355 ---caccacagctggctaattttgta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171446623 11 - 171630274 ---------------ctacttatgta
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            271221 11 -    375362 ---------------ctaattttgta
i saiBol1.JH378348         C 0 I 7
s cebCap1.NW_016108108v1      269772 11 -    373274 ---------------ctaattttgta
i cebCap1.NW_016108108v1   C 0 I 3
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25935799  0 +  26524999 C
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      202879 13 -    285216 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=2242291.000000
s hg38.chr6_GL000254v2_alt    200742 291 +   4827813 tatttttagtagagactggtttcaccatgttgatcaggctggtcttgaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgctgggattacaggtgtgagccactgcacctggcctaggaaacttcgaatcatggcggaaaacaaagggggagcaggcatatcgcctagcgagaatggagcaagGAGGCcccaccagaccccacctccaatattggggattacatctcaatgtgagacaaatatccaatttgagtggggacaaatatccaaactatatca
s panTro5.chr6              29188184 291 + 175400573 tatttttagtagagactggtttcaccatgttgatcaggctggtcttgaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgctgggattacaggtgtgagccactgcacctggcctaggaaacttcgaatcatggcggaaaacaaagggggagcaggcacatcgcctagcgagaatggagcaagGAGGCcccaccagaccccacctccaatattggggattacatctcaatgtgagacaaatatccaatttgagtggggacaaatatccaaactatatca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29422231 291 + 173848474 tatttttagtagagactggtttcaccatgttgatcaggctggtcttgaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgctgggattacaggtgtgagccactgcacctggcctaggaaacttcgaatcatggcagaaaacaaagggggagcaggcacatcgcctagcgagaatggagcaagGAGGCcccaccagaccccacctccaatattgaggattacatctcaatgtgagacaaatatccaatttgagtggggacaaatatccaaactatatca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5222935 290 +   6154872 tatttttagtagagactggtttcaccatgttgatcaggctggtcttgaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgctgggattacaggtgtgagccactgcacctggcctaggaaacttcgaatcatggcggaaaacaaagggggagcaggcacatcgcctagcgagaatggagcaagGAGGCcccaccagaccccacctccaa-attggggattccatctcaatgtgagacaaatatccaatttgagtggggacaaatatccaaactatatca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74225111 290 + 122973662 tttttttagt-gagactggtttcaccatgttgatcaggctggtcttgaactcctgacttcaagtcatccacctgccttggcctcccaaagtgctgggattacaggcatgagccaccgcgcctggcctaggaaacttctaatcatggaggaagacaaaaggggagcaggcacatcgcctggcaagaatggagcaagGAGGCcccaccagaccccatctccaatattggggattacatctcactgtgagacaaatatccaatttgagtggggacaaatatccaaactatatca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29401779 291 + 172585720 ttttttaagtagagacgggtttcaccatgttgatcaggctggtctcgaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgctgggattacaagcttgagccactgcgcctggcctaggaaacttctaatcatggaggaagacaaagagggagcaggtacgtcgcctggctagaatggaggaagGAGGCcccaccagaccccacctccaatattggggattacatctcaatatgagacagatatccaatttgagtggggacaaatatccaaactatatca
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2052431 291 -   2996164 tttttttagtagagacgggtttcaccatgttgatcaggctggtctcgaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgctgggattacaagcttgagccactgcgcctggcctaggaaacttctaatcatggaggaagacaaagagggagcaggtacgtcgcctggctagaatggaggaagGAGGCcccaccagaccccacctccaatattggggattacatctcaatatgagacagatatccaatttgagtggggacaaatatccaaactatatca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1919556 290 -   2157725 tttttt-agtagagaccggtttcaccatgttgatcagactggtctcaaactcctgacctcaagtgatccacctgcctcagcctcccaaagtgctgggattacaagcttgagccactgcgcctggccTaggaaacttccaatcatagcggaagacaaagggggagcaggtacgtcgcctggcgagaatggaggaaggagGCcccaccagacaccacctccaatattggggattacatctcaatatgagacaaatatccaatttgagtggggacaaatatccaaactatatca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28359471 291 -  71996105 tttttttattagagacgggtttcaccatgttgatcaggctggtctcgaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgctgggattacaagcttgagccactgcgcctggccTaggaaacgtctaatcatggcggaagacaaagggggagcaggtacatcgcctggctagaatggaggaagGAGGCcccaccagaccccacctccaatattgaggattacatctcaatatgagacaaatatccaatttgagtggggacaaatatccaaactatatca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2045786 290 +   2316924 -ttttttagtagagaccggtttcaccatgttgatcagactggtctcaaactcctgacctcaagagatccacctgcctcggcctcccaaagtgctgggattacaagcttgagccactgcgcctggcctaggaaacttccaatcatggcggaagacaaagggggagcaggtacgtcgcctggcgagaatggaggaagGAGGCcccaccagacaccacctccaatattggggattacatctcaatatgagacaaatatccaatttgagtggggacaaatatccaaactatatca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1923537 291 -   3067355 tttttttagtagagaccggtttcaccatgttgatcaggctggtctcgaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgctgggattacaagcttgagccactgagcctggcctaggaaacttccaatcatggcggaagacaaagggggagcaggtacgtcgcctggcgagaatggaggaagGAGGCcccaccagaccccacctccaatattggggattacatctcaatatgagacaaatatccaatttgagtggggacaaatatccaaactatatca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171446635 229 - 171630274 tttttttagtagagacagggtt--tcatgttgatcagactggtcttgaactcttgacctcaagtgatccacccgcct-------------------------------------ccgcGCCTGGTCTGAgaaacttataattatggcggaagacaaagggggaggaggcacattgcacggcgagagaggagcaCAGGTGCcccaccaggccccacctccaacattggggatcacatctcaacgt-----------------------gagacaggtatccaaacgatatca
i calJac3.chr4             I 1 C 0
s saiBol1.JH378348            271239 289 -    375362 ttttttttttagagacagggtt--tcatgttgatcaggctggtcttgaactctagacctcaagtgattcacccgccttggtctcccaaagtgctgggattacaggcatgagccaccgtgcctggtctgagaaacttctaattatggaggaagacaaagcaggaggaggcacatcgcgctgcgagagaggagcaagggggtcccaccagaccccatctccaatattgaggattacatctcaacatgagacaaatatccaatatgagtggagacaaatatccaaacgatatca
i saiBol1.JH378348         I 7 C 0
s cebCap1.NW_016108108v1      269786 289 -    373274 tttttttagtagagacagggtt--tcatattgatcaggctggtcttgaactctagacctcaagtgatccacttgccttggtctcccaaagtgctgggattacaggtttgagccaccgtgcatggtctgagaaacttctaattatggcagaagacaaagggggaggaggcacatcgcagtgcgagagaggagcaagggggCcccaccaggcccaacctccaatattggggattacatctcaacgtgagacaaatatccaatgtgagtgcagacaaatatccaaacgatatca
i cebCap1.NW_016108108v1   I 3 C 0
s aotNan1.NW_018494050v1      202892 242 -    285216 tttttttagtagagacagggtt--tcatgttgatcaggctggtcttgaactcttgacctcaagtgacccatccacctccatctcccaaagtgctgggattacatacgtgagccaccgcgcgcggtctgagaaatttctaattacggcggaagacaaagggg------------------------gaggagCAAGGGGGCcccatcaggccccacctccaatattggggattacagctcaacgt-----------------------gagacaaatatcccaacgatatca
i aotNan1.NW_018494050v1   I 13 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25935799   0 +  26524999 C
e otoGar3.GL873742           1569794 563 -   2232465 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=813739.000000
s hg38.chr6_GL000254v2_alt    201033 95 +   4827813 AACATTTTTAGAGTTTATGCTGTAGAGCATTTAA-TTGACATTAAATGATAAACTGTTTCATATTGTTAAtttattgaggtaaaatatacataaag
s panTro5.chr6              29188475 95 + 175400573 AACATTTTTAGAGTTTATGCTGTAGAGCATTTAA-TTGACATTAAATGATAAACTGTTTCATATTGTTAAtttattgaggtaaaatatacataaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29422522 95 + 173848474 AACATTTTTAGAGTTTATGCTGTAGAGCATTTAA-TTGACATTAAATGATAAACTGTTTCATATTGTTAAtttattgaggtaaaatatacataaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5223225 93 +   6154872 AACATTTTTAGAGTTTATGCTGTAGAGCATTTAA-TTGACATTAAATGATAAAC--TTTCCTATTGTTAAtttattgaggtaaaatatacataaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74225401 95 + 122973662 AACATTTTTAGAGTTTATGCTGTAGAGCATTTAA-TTGACATTAAATGATAAAGTGTCTCATATTGTTAAtttattgaggtaaaatatacataaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29402070 95 + 172585720 AACATTTTTAGAGTTTATGCTGTAGAGCATTTAA-TTGACATTAAATTATAAACTGTCTCATATTGTTAAtttattgaagtaaaatatacataaag
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2052722 95 -   2996164 AAAATTTTTAGAGTTTATGCTGTAGAGCATTTAA-TTGACATTAAATTATAAACTGTCTCATATTGTTAAtttattgaagtaaaatatacataaag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1919846 95 -   2157725 AACATTTTTAGAGTTTATGCTGTAGAGCATTTAA-TTGACATTAAATTATAAACTGTCTCATATTGTTAATTTATTGAAGTAAAATATACATAAAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28359762 95 -  71996105 AACATTTTTAGAGTTTATGCTGTAGAGCATTTAA-TTGACATTAAATTACAAACTGTCTCATATTGTTAAtttattgaagtaaaatatacataaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2046076 95 +   2316924 AACATTTTTAGAGTTTATGCTGTAGAGCATTTAA-TTGACATTAAATTATAAACTGTCTCATATTGTTAATTTATTGAAGCAAAATATACATAAAG
i manLeu1.NW_012104165v1   C 0 I 767
s colAng1.NW_012115566v1     1923828 95 -   3067355 AACATTTTTAGAGCTTATGCTGTAGAGCATTTAA-TTGACATTAAATTATAAACTGTCTCATATTGTTAATTTATTGAAGTAAAATATACATAAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171446864 85 - 171630274 AACCTCTTTAAAGTTTATGCCGTAGAGTACTTAA------ATTAAA--ATTAAATGTCTCATA---TTAAtttattgaagtaaaatatgcataaag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            271528 90 -    375362 AACCTCTTTAAAGTTTATGCTGTCGAGTACTTAA------ATTAAATGATAAACTGTCTCATATTGTTAAtttattgaagtaaaatatacatgaag
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      270075 96 -    373274 AACTTTTTTAAAGTTTATGCTGTAGAGTACTTAAATTGGCATTAAATGATAAACTGTCTCATATTGTTAAtttattgaagtaaaatatacataaag
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      203134 89 -    285216 AACCTC-------TTTATGCTGTAGAGTACTTAAATTAAAATTACATGATAAACTGTCTCATATTGTTAAtttattgaagtaaaatatacataaag
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25935799 87 +  26524999 AACATCTTCAGAACTTATACTGTGGAGCATCTAA-TTGACCCTGAGTAAGAAACTATCTTATACtg-taattt-------tgaaatacacatgaag
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=184957.000000
s hg38.chr6_GL000254v2_alt    201128 24 +   4827813 ggaacaagccttcagtgtataagc
s panTro5.chr6              29188570 24 + 175400573 ggcacaagccttcagtgtataagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29422617 24 + 173848474 ggcacaagccttcagtgtataagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5223318 24 +   6154872 agcacaagccttcagtgtataagc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74225496 24 + 122973662 ggcacaagccttcagtgtataagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29402165 24 + 172585720 tgcacaagccttcagtgtataagc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2052817 24 -   2996164 tgcacaagccttcagtgtataagc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1919941 24 -   2157725 TGCACAAGCCTTTAGAGTATAagc
i cerAty1.NW_012001495v1   C 0 I 649
s chlSab2.chr17             28359857 24 -  71996105 tgcacaagccttcagtgtataagc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1923923 24 -   3067355 TGCACAAGCCTTTAGAGTATAagc
i colAng1.NW_012115566v1   C 0 I 644
s calJac3.chr4             171446949 24 - 171630274 tgcacaagccttcagtatataacc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            271618 24 -    375362 tgcacaagccttcagtgtataacc
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      270171 24 -    373274 tgcacaagccttcagtgtataacc
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      203223 24 -    285216 tgcacaagccttcagtatataacc
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25935886 24 +  26524999 tgtacaacttctcaatgtatagtg
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=996236.000000
s hg38.chr6_GL000254v2_alt    201152 176 +   4827813 taa-tgaattgttacatgtgtgtacccaccatccagatcaagaggaaaaatattttcagcatccaggaaggctgtctcatgt-ctctttc-catcagtatccactcccagaggttacttag-aaaaaatcactattccaaatttctagaagcattgattaattctgcctgttcttgaact
s panTro5.chr6              29188594 177 + 175400573 taa-tgaattgttacatgtgtgtagccaccatccagatcaagaggaagaatattttcagcatccaggaaggctgtctcatgt-ctctttc-catcagtatccactcccagaggttacttagaaaaaaatcactattccaaatttctagaaacattgattaattctgcctgttcttgaact
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29422641 177 + 173848474 taa-tgaattgttacatgtgtgtagccaccatccagatcaagaggaagaatattttcagcatccaggaaggctgtctcatgt-ctctttc-catcagtatccactcccagaggttacttagaaaaaaatcactattccaaatttctagaaacattgattaattctgcctgttcttgaact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5223342 176 +   6154872 taa-tgaattgttacatgtgtgtagccaccatccagatcaagaggaagaatattttcagcatccaggaaggctgtctcatgt-ctctttc-catcagtatccactcccagaggttacttag-aaaaaatcactattccaaatttctagaagcattgattaattctgcctgttcttgaact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74225520 176 + 122973662 taa-tgaattgttacatgtgtgtagccatcatccagatcaagaggaagaatattttcagcatccaggaaggctctctcatgt-ctctttc-catcagtgtccactcccagaggttacttag-aaaaaatatctattccaaatttctagaagtattgattaattctgcctgttcttgaact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29402189 177 + 172585720 taa-tgaattgttacatgtgtgtagccaccatccagatcaagaggaagaatattttcagcatccaggaaggctctctcgtgc-ctctttc-cttcagtatccactcccagaggttacttagaaaaaaatcactattccaaatttctagaaggattgattaattctgcctgttcttgaact
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2052841 177 -   2996164 taa-tgaattgttacatgtgtgtagccaccatccagatcaagaggaagaatattttcagcatccaggaaggctctctcgtgc-ctctttc-cttcagtatccactcccagaggttacttagaaaaaaatcactattccaaatttctagaaggattgattaattctgcctgttcttgaact
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28359881 177 -  71996105 taa-tgaattgttacatgtgtgtagccaccatccagatcaagaggaagaatattttcagcatccaggaaggctccctcatgc-ctctttc-cttcagtatccactcccagaggttacttagaaaaaaatcactattccagatttctagaaggattgattaattctgcctgttcttgaact
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             171446973 175 - 171630274 taa-tgaattgtcccatgtgtgtagccaccatccagatcaagaggaagaacattttcagcatctaggaaggct--ctcatgc-ctctttctcatcagtacccactcccagaggttacctag-aagaaatcactattccagatttctagaagcattgattaattctgcctCTGCCTGttct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            271642 172 -    375362 taa-tgaattgaccca--tgtgtagccaccatccagatcaagacaaagaacattttcagcatccaggaggggt--ctcatgc-ctctttctcatcagtacccact-ccagaggttacctag-aagaaatcactagtccagatttctagaagcattgattaattctgcctgttcttgaact
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      270195 172 -    373274 taa-tgaattgtccca--tgtgtagccaccatccagatcaagacaaagaacattttcagcatcca-gaaggct--ctcatgc-ctctttcttatcagtacccactcccagaggttacctag-gagaaatcactatttcagatttctagaagcattgattaattctgcctgttcttgaact
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      203247 175 -    285216 taa-tgaattgtcccatgtgtgtagccagcatccagatcaagacgaagaacattttcagcagctaggaaggct--ctcatgc-ttctttctcatcagcacccactcccagacgttacctag-aagaaatcactattccagatttctacaagcattgattaattctgcctgttcttgaatt
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25935910 171 +  26524999 taattgaactgttacg--tgtgtagtcatcattcagatcataatgaagaatattttcaggatcccaga-ggctcccttatgctccccctc-catcaatacccacccccaagagttattcaa-aggaaaccactgttctaaatttccagacac----attaatttcacctgttcttgaact
i canFam3.chr35            C 0 I 1960
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=18568.000000
s hg38.chr6_GL000254v2_alt    201328 4 +   4827813 tcat
s panTro5.chr6              29188771 4 + 175400573 tcat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29422818 4 + 173848474 tcat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5223518 4 +   6154872 tcat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74225696 4 + 122973662 tcat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29402366 4 + 172585720 tcat
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2053018 4 -   2996164 tcat
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28360058 4 -  71996105 tcat
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             171447148 4 - 171630274 ttgt
i calJac3.chr4             C 0 I 1586
s saiBol1.JH378348            271814 4 -    375362 tcac
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      270367 4 -    373274 tcac
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      203422 4 -    285216 tcac
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25936081 1960 +  26524999 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=1506237.000000
s hg38.chr6_GL000254v2_alt    201332 338 +   4827813 atgaagagactcctaTCATGAGCACTTAttggg--gttttaaattgttgtctgttatgaataaagctgccctaaacgttctggtggtatatgtctgttcatggacaaatgccctcatttctaggagtggaattgctagtaggcatatgtttagttttttagataatgccaaaaaatgttccatagtgaatgtgctaattaacacttctagcagcaatgcatgagaattctagttgccgcacatattacaccaacacttggtacagcatatgtgttttaaaatattttagctgttcaggtggatttgtagtggtatctcattgtggttttaa-------tttatattt
s panTro5.chr6              29188775 340 + 175400573 atgaagagactcctaTCATGAGCACTTAttgggttgttttaaattgttgtctgttatgaataaagctgccctaaacgttctggtggtatatgtctgttcatggacaaatgccctcatttctaggagtggaattgctagtaggcatatgtttagttttttagataatgccaaaaaatgttccatagtgaatgtgctaattaacacttctagcagcaatgcatgagaattctagttgctgcacatattacaccaacacttggtacagcatatgtgttttaaaatattttagctgttcaggtggatttgtagtggtatctcattgtggttttaa-------tttatattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29422822 340 + 173848474 atgaagagactcctaTCATGAGCACTTAttgggttgttttaaattgttgtctgttatgaataaagctgccctaaacgttctggtggtatatgtctgttcatggacaaatgccctcatttctaggagtggaattgctagtaggcatatgtttagttttttagataatgccaaaaaatgttccatagtgaatgtgctaattaacacttctagcagcaatgcatgagaattctagttgctgcacatattacaccaacccttggtacagcatatgtgttttaaaatattttagctgttcaggtggatttgtagtggtatctcattgtggttttaa-------tttatattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5223522 340 +   6154872 atgaagagactcctaTCATGAGCACTTAttgggttgttttaaattgttgtctgttatgaataaagctgccctaaacgttctggtggtatatgtctgttcatggacaaatgccctcatttctaggagtggaattgctagtaggcatatgtttagttttttagataatgccaaaaaatgttccatagtgaatgtgctaattaacacttctagcagcaatgcatgagaattctagttgccgcacatattacaccaacacttggtacagcatatgtgttttaaaatattttagctgttcaggtggatttgtagtggtatctcattgtggttttaa-------tttatattt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74225700 338 + 122973662 at--aaaGACTCTTATCATAAGCACTTAttgggttgttttaagttgttgtctgttatgaataaagctgccctgaatgttctggtggtatatgtctgttcatggacaaatgccctcgtttctaggagtggaattgctagtaggcacatgtttagttttttagataatgccaaaaaatgttccatagtgaatgtgctaattaacacttctagcagcaatgcatgagaattctagttgccacacatattacaccaacacttggtacagcatatgtgttttaaaatattttagctgttcaggtggatttgtagtggtatctcattgtggttttaa-------tttatattt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29402370 347 + 172585720 ataaatagattcgtatcataagcacgtactgggttgttttaagttgttgtctgttgttaataaagctgccctgaacgttctggtggtatatgtctgttcatggacaaatgccctcatttctaggattggaattgctagtaggcatacgtttagttttttagataatgccaaagaacgttccataatgaatgtgctaattaacacttctagcagcaatgcatgagaattctagttgctgcacatattacaccaacacttggtacagcatatgtgttttaaaatattttaactgttcaggtggatttgtagtggtatctcattgtagttttaatttaaattttatattt
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2053022 347 -   2996164 ataaatagattcgtatcataagcacgtactgggttgttttaagttgttgtctgttgttaataaagctgccctgaacgttctggtggtatatgtctgttcatggacaaatgccctcatttctaggattggaattgctagtaggcatacgtttagttttttagataatgccaaagaatgttccatagtgaatgtgctaattaacacttctagcagcaatgcatcagaattctagttgctgcacatattacaccaacacttggtacagcatatgtgttttaaaatattttaactgttcaggtggatttgtagtggtatctcattgtagttttaatttaaattttatattt
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28360062 347 -  71996105 ataaataggttcgtatcataagcactTACtgggttgttttaagttgttgtctgttgttaataaagctgccctgaacgttctagtggtgtatgtctgttcatggacaaatgccctcatttctagcattggaattgctagtaggcatacgtttagttttttagacaatgccaaagaatgttccatagtgaatgtgctaattaacacttctagcagcaatgcatgagaattctagttgctgcacatattacaccaacacttggtacggcatatgtgttttaaaatattttaactgttcaggtggatttgtagtggtatctcattgtagttttaatttaaattttatattt
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378348            271818 335 -    375362 ataaatagaatcctatcataagcactTACtggg-----ttaagttgttgtctgttgtaaataaagctgccctgaactttctggtgatatgtgtctgttcatagacaaatgccctcatttccaggaatggagttgctagtaggcatatgtttagttttttagataatgccaaacagttttccatagtgaatatgctaattaacacttctagcagcaatgcatgagaattctagttgctgcacatattacgccaatacttggaacagtatatgtgttttaaaatactttagctgttcaggtgggtttgtgatggcatctcatagtggtttttt-------ttttttttt
i saiBol1.JH378348         C 0 I 1124
s cebCap1.NW_016108108v1      270371 335 -    373274 ataaatagaatcctatcgtaagcactTACtggg-----ttaagttgttgtctgttgtgaataaagctgccctgaactttctggcgatatgtgtctgttcatagacaaatgccctcgtttccaggaatggaattgctagtaggcgtatgtttagttttttagataatgccaaacagttttccatagtgagtgtgctaattaacacttctaacagcaatgcatgagaattctagtcgctgcacatattacaccaatacttggtacagcatatgtgttttaaaatattttagccgttcaggtggatttgtgatggcatctcatagtggttttaa-------tttaattta
i cebCap1.NW_016108108v1   C 0 I 6
s aotNan1.NW_018494050v1      203426 332 -    285216 atgaatagaatcctatcgtaagcactTACTGGG-----TTAA---Gttgtctgttctgaataaagctgccctgaacgttctggtgatgtgtgtctgttcatggagaaatgccctcgtttccgggagtggaattgctagtaggcgtatgtttagttttttagataatgccaaacaactttccatagtgaatgtgctaattaatacttctagcagcattgcatgagaattgtagttgctgcatatattacaccaatacttggtacagcgtgtgtgttttaaaatattttagctgttcaggtggatttgtgatagcatttcatagtggttttaa-------tttaactta
i aotNan1.NW_018494050v1   C 0 I 6
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25936081 1960 +  26524999 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e calJac3.chr4             171447152 1586 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=1665150.000000
s hg38.chr6_GL000254v2_alt    201670 502 +   4827813 ccctgctaattaatgatactgagcacattttcaaattttcttttgctggagtgcagttatgcaatcatgacccactgcagcctcaacttcccaggctcacaggatcctcctacctcag-cctcctgaatagctcagactacaggcacacgccaccatgcctggctaa--tttttttttt--------------------------------ttttt--------ttttgtagagatggtggggcaggggg-agtcttactatgt----tgcccaggctggtctcgaactcctgggctcaagtaatcctcccacctcctgaagtgctggtggcattacagcgtgagccactgtccctggcctcatatgtgt----actatttgaatgtagtctttagggaagttcctgatcaagtcttttgtcatt-aaaaaaaaa-ttatttgtctttttcttgttgatttacaagagtgctt--tatatatttaggatgagtcctttctcaggtatgtattttgcaaatgttccctgcaatttgtggcttccatttttcattttctt
s panTro5.chr6              29189115 503 + 175400573 ccctgctaattaatgatactgagcacattttcaaattttcttttgctggagtgcagttacgcaatcatgacccactgcagcctcaacttcccaggctcacaggagcctcctacctcag-cctcctgaatagctcagactacaggcacacgtcaccatgcctggctaa-ttttttttttt--------------------------------ttttt--------ttttgtagagatggtggggcaggggg-agtcttactatgt----tgcccaggctggtctagaactcctgggctcaagtaatcctcccacctcctgaagtgctggtggcattacagcgtgagccactgtccctggcctcatatgtgt----actatttgaatgtagtctttagggaagttcctgatcaagtcttttgtcatt-aaaaaaaaa-ttatttgtctttttcttgttgctgtacaagagtgctt--tatatatttaggatgagtcctttctcaggtatgtattttgcaaatgtttcctccaatttgtggcttccatttttcattttctt
i panTro5.chr6             C 0 I 6
s panPan2.chr6              29423162 491 + 173848474 ccctgctaattaatgatactgagcacattttcaaattttcttttgctggagtgcagttacgcaatcatgacccactgcagcctcaacttcccaggctcacaggagcctcctacctcag-cctcctgaatagctcagactacaggcacacgtcaccatgcctggctaa--------------------------------------------ttttt--------ttttgtagagatggtggggcaggggg-agtcttactatgt----tgcccaggctggtctcgaactcctgggctcaagtaatcctcccacctcctgaagtgctggtggcattacagcgtgagccactgtccctggcctcatatgtgt----actatttgaatgtagtctttagggaagttcctgatcaagtcttttgtcatt--aaaaaaaa-ttatttgtctttttcttgttgctttacaagagtgctt--tatatatttaggatgagtcctttctcaggtatgtattttgcaaatgtttcctgcaatttgtggcttccatttttcattttctt
i panPan2.chr6             C 0 I 6
s gorGor5.CYUI01015250v1     5223862 499 +   6154872 ccctgctaattaatgatactgagcacattttcaaattttcttttgctggagtgcagttatgcaatcatgacccactgcagcctcaacttcccaggctcacaggatcctcctacctcag-cctcctgaatagctcagactacaggcacacgccaccatgcctggctaa-----ttttttt--------------------------------ttttt--------ttttgtagagatggtggggcgggggg-agtctttctatgt----tgcccaggctggtctcgaactcctgggctcaagtaatcctcccacttcctgaagtgctggtggcattacagcgtgagccactgtccctggcctcatatgtgt----actatttgaatgtagtctttagggaagttcctgatcaagtcttttgtcatt-aaaaaaaaa-ttatttgtctttttcttgttgatttacaagagtgctt--tatatatttaggatgagtcctttctcaggtatatattttgcaaatgtttcctgcaatttgtggcttccatttttcattttcat
i gorGor5.CYUI01015250v1   C 0 I 1
s nomLeu3.chr1a             74226038 497 + 122973662 ccctgctcattaatgatactgagcacattttcaaattttcttttgctggagtgcagttatggaatcatgacccactgcagcctcaacttcccaggctcacatgatcctcctacctcag-cctcctgaatagctcggactacaggcacatgccaccatgcctggctaa----------tt--------------------------------ttttt--------ttttgtagagatggtggggcagaggg-agtctcactatgt----tgcccaggctggtctcaaactcctgggctcaagtaatcctccctcctcctgaagtgctggcagcattatagcgtgagccaccatccctggcctcatatgtgtactgactatttgaatgtagtctttagggaagttcctgatcaagtcttttgttatt--aaaaaaaa-ttatttatctttttcttgttgatttacaagggtgctt--tatatatttaggatgagtcctttctcaggtatgtattttgcaaatgtttcctgcaatttgtggcttccatttttcatttttct
i nomLeu3.chr1a            C 0 I 3
s rheMac8.chr4              29402717 497 + 172585720 ccctggtaatcaatgatactgagcacattttcaaattttcttttgctggagtgcagttatgcaatcattacccagtgcagcctcaacttcccaggctcacatgatcctcccacctcag-cctcctgaatagctcggactacaggcacacaccaccatgcctggctaa--------tttt--------------------------------ttttt--------ttttctagagatggtggggtgggggt-aatctcactatgt----tgcccaggctggtctgtaactcctgtgctcaagtaatcctcccacctcctgaagtgctggtggcattacagcatgagccatcatccctggcctcatatgttcactgactatttgaatg-agtc--tagtgaagttcctgatcaagtctttcgtcatt-aaaaaaaaa-ctatttgtctttttcttgttgatttacaatagtgctt--tgcatctttaggatgagtcctttctcgggtatgtattttgcaaatgtttcctgcaatttgtggcttccatttttcattttttt
i rheMac8.chr4             C 0 I 6
s macNem1.NW_012011356v1     2053369 497 -   2996164 ccctggtaatcaatgatactgagcacattttcaaattttcttttgctggagtgcagttatgcaatcattacccagtgcagcctcaacttcccaggctcacatgatcctcccacctcag-cctcctgaatagctcggactacaggcacacaccaccatgcctggctaa--------tttt--------------------------------ttttt--------ttttctagagatggtggggtgggggt-aatctcactatgt----tgtccaggctggtctgtaactcctgtgctcaagtaatcctcccacctcctgaagtgctggtggcattacagcatgagccatcatccctggcctcatatgttcactgactatttgaatg-agtc--tagtgaagttcctgatcaagtctttcgtcatt-aaaaaaaaa-ctatttgtctttttcttgttgatttacaatagtgctt--tgcatctttaggatgagtcctttctcgggtatgtattttgcaaatgtttcctgcaatttgtggcttccatttttcattatttt
i macNem1.NW_012011356v1   C 0 I 6
s chlSab2.chr17             28360409 496 -  71996105 ccctgctaatcaatgatactgagcacattttcaaatTTTCTTTTTctggagtgcagttatgcaatcatgacccagtgcagcctcaacttcccaggctcacatgatcctcccacttcaa-cctcctgaatagctcggactacaggcacacaccaccatgcctggctaa---------ttt--------------------------------ttttt--------ttttctagagatggtggggt-agggt-aatctcactatgt----tgcccaggctggtctctaactcctgtgctcaagtaatcctcccacctcctgaagtgctggtggcattacagcatgagccatcatccctggcctcatatgtttactgactatttgaatg-agtc--tagtgaagttcctgatcaagtctttcgtcatt-aaaaaaaaacctatttgtctttttcttgttgatttacaatagtgctt--tgtatctttaggatgagtcctttctcgggtatgtattttgcaaatgtttcctgcaatttgtggcttccatttttcattttttt
i chlSab2.chr17            C 0 I 6
s cebCap1.NW_016108108v1      270712 538 -    373274 cttggtaaattaatgatactgagcacattttcaaattctCTTTTCctggagagcagtaatacagacaaggcccaccgcagccttaacttcccaggctcgtgtgatcctcccacctcagcccttcctgatagctcaaactac--------accaccatgcctggctaatttttttttttTCTTCATGCCTTATTGAAAATAgcctggctagttttttaaaaaaaattttgtagagatggtggggcagagggcagtctcactatgttgcttgcccaggctggtctc-aactcttggactcaaataatcctcccacctcc--aagtgttggtggcattacagcatgagccaccat-cctggcctcatatgtttactgactatttgaatgtatgctttagtgaagttcctaatcaagtcttttgtcatt-gaaaaaaaa-----ttgtctttttcttgttgatttggaagagtgctt--tatatatttaggatgagtcctttctcagatatgtattttgcaaatgttttcctcaatttgtagcttaaatttttcatttcctt
i cebCap1.NW_016108108v1   I 6 I 319
s aotNan1.NW_018494050v1      203764 539 -    285216 cccggtaaattaatgatactgagcacattttcaaattcttcttTgctggagagcagtgatacagtcaaggcccactgcagcctcaacttcccaggctcctgtgatcctcccacctcagcccttccggatagctcaaactac--------gccaccatgcctggctaa--ttttatttttCTTCATGCCCTTTTGAAAATAgcctggctag-tttttaataaaatttttgtagagatggtggggcagggggcagtctcactatgttgcctgcccaggctggtctcaaactcttggactcaaataatcctcccacctcc--aagtgctggtggcatcacagcatgagccaccat-cctggcctcatctgtttactgactattttaatgtatgctttagtgaagttcctgatcaagtcttttgtcattaaaaaaaaaa-----ttgtctttttcttgttgatttgtaagagtgctttatatatatttcggatgagtcctttctcagatatgtgttttgcaaatgttttccccaatttgtggcttacatttttcatttcctt
i aotNan1.NW_018494050v1   I 6 I 5
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25936081 1960 +  26524999 I
e saiBol1.JH378348            272153 1124 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e calJac3.chr4             171447152 1586 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=746075.000000
s hg38.chr6_GL000254v2_alt    202172 286 +   4827813 tttcttttt--------------tttttttcgggagaca-----gagtctcact-ctgttg---c-cag---gctggagggcagtggcacaatctcgactcactgcaacctccgcctcccgggttcaagtgatcctcctgcctcaggctcctgagtagctgggactacaggtgtgcgcca--ccacgctcagctaa-tttttgtatttttagtagagacagggtttcactgtgttggccagga-tggt-cttgatctcttgacctt-gtgat----ctgcctcagcctcc-caaagtgctgggattaca-ggcgtgagccaccac
s panTro5.chr6              29189624 286 + 175400573 tttcttttt--------------tttttttcgggagaca-----gagtctcact-ctgctg---c-cag---gctggagggcagtggcacaatctcgactcactgcaacctccgcctcccgggttcaagtgatcctcctgcctcaggctcctgagtagctgggactacaggtgtgctcca--ccacgctcagctaa-tttttgtatttttagtagagacggggtttcactgttttggccagga-tggt-cttgatctcttgacctt-gtgat----ctgcctcagcctcc-caaagtgctgggattaca-ggcgtgagccaccac
i panTro5.chr6             I 6 C 0
s panPan2.chr6              29423659 286 + 173848474 tttcttttt--------------ttttttttgggagaca-----gagtctcact-ctgctg---c-cag---gctggagggcagtggcacaatctcgactcactgcaacctccgcctcccgggttcaagtgatcctcctgcctcaggctcctgagtagctgggactacaggtgtgcgcca--ccacgctcagctaa-tttttgtatttttagtagagacggggtttcactgtgttggccagga-tggt-cttgatctcttgacctt-gtgat----ctgcctcagcctcc-caaagtgctgggattaca-ggcgtgagccaccac
i panPan2.chr6             I 6 C 0
s gorGor5.CYUI01015250v1     5224362 286 +   6154872 ttctttttt--------------tttttttcgggagaca-----gagtctcact-ctgttg---c-cag---gctggagggcagtggcacaatctcaactcactgcaacctctgcctcccgggttcaagtgatcctcctgcctcaggctcctgagtagctgggactacaggtgtgcgcca--ccacgctcagctaa-tttttgtatttttagtagagacggggtttcactgtgttggccagga-tggt-cttgatctcttgacctt-gtgat----ctgcctcagcctcc-caaagtgctgggattaca-ggcgtgagccaccac
i gorGor5.CYUI01015250v1   I 1 C 0
s nomLeu3.chr1a             74226538 280 + 122973662 tcttttttt--------------ctttttttgg-----------gagtctcact-ctgttg---c-cag---gctggagggcagtggcgcaatctcgactcactgcaacctccgcctcccgggttcaagcgattctcctgcctcaggctgctgagtagctgggactacaggtgtgcacca--ccacgctcagctaa-tttttgtatttttagtagagacggagtttcactgtgttggccagga-tggt-cttgatctcttgatctt-gtgat----cctcctgagcctcc-caaagtgctgggattaca-ggcatgagccaccat
i nomLeu3.chr1a            I 3 C 0
s rheMac8.chr4              29403220 297 + 172585720 tttcttttc-------tttttttttttttttttgagaca-----gagtctcgct-ctgttg---c-cag---gctagagtacagtggcacaatctcagctcactgctacctctgcctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgggactacaggtgtgcacca--ccacactcagctaa-tttttgtatttttagtagagacagggtttcactatgttggccacga-tggt-ctcgatctcttgacctt-gtgatccgcctgccttggcctcc-caaaatgctgggattaca-ggcgtgagccactgc
i rheMac8.chr4             I 6 C 0
s macNem1.NW_012011356v1     2053872 316 -   2996164 tttcttttc------ttttttttttttttttttgagacaccagggagtctcgctcctgttggccc-tagggcgctagagtacagtggcacaatctcagctcactgctacctctgcctcct-ggttcaagcgttctccctgcctcagcctcctgagtagctgggactacaggtgtgcaccaaccaactcccagctaa-tttttgtatttttagtagagacagggtttcactatgttggccacgagtggtcctcgatctcttgacgttcgtgatccgcctgccttgccctccaaaaaatgctgggattacagggcgtgagccactgc
i macNem1.NW_012011356v1   I 6 C 0
s chlSab2.chr17             28360911 303 -  71996105 tttcttttcttttcttttcttttttttttttttgagatg-----gagtttcact-ctgttg---c-cag---gctagagtacagtggcacaatctcagctcactgctacctctgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggtgtgcacca--ccacacttagctaa-tttttgtatttttagtaga-acagggtttcactatgttggccacga-tggt-ctcgatctcttgacctt-gtgatctgcctgccttggcctcc-caaaatgctgggattaca-ggcgtgagccactgc
i chlSab2.chr17            I 6 C 0
s aotNan1.NW_018494050v1      204308 290 -    285216 --ttttttt--------------ttttttttttgagacg-----gagtctctca-ctgttt---ctcag---gtggtagtgcagtggctcaatcttggctgactgcaacctccgcctcccaggttcacgctactttcctgcctcagcctcccgagtagctggggttacaggcacacacca--ccacacctgactaattttttgtatttttagtagacacagggtttcactatgttggccagaa-tggt-ctcaaactcctgacctc-gtgatccacccaccgcagcctcc-caaagtgctgggattaca-ggcgtgagccaccac
i aotNan1.NW_018494050v1   I 5 I 10
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25936081 1960 +  26524999 I
e saiBol1.JH378348            272153 1124 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e cebCap1.NW_016108108v1      271250 319 -    373274 I
e calJac3.chr4             171447152 1586 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=1102967.000000
s hg38.chr6_GL000254v2_alt    202458 489 +   4827813 gcccggcctcca-tttttcattttcttaatgatgttttttgatgaatagaagtttccag-ttttgatgaattttatttcatcgactttATTGAtttatttttaaaatttttacactta--------------------------tttatttatttaatagacatgggttctcactgtgttgcccaggctagagtgcagtgactgttcacaggggctatcattgtgcactacgacctcaatttcctgggctcaagcgatcctcccacctcaagcctcctgagtagctggaactacaggtgggtgcctgtttaactttttttttttttcattttggttactctttcctgtttttgaaatctttgcgtaccttacattcattaacatatcctctttctagaagctttactttccctgtcatacttaggtgtatggtccattatgaattcatttttgtgtttggtgtgaggcaaaggtctagatttagttttttt-cctaattggtccagcaccttttattg
s panTro5.chr6              29189910 488 + 175400573 acccggcctcca-tttttcattttcttaatgatgttttttgatgaatacaagtttccag-ttttgatgaattttatttcatcgactttATTGAtttatttttaaaatttttacactta--------------------------tttatttatttaatagatatgggttctcgctgtgttgcccaggctagagtgcagtgactgttcacaggggctatcattgtgcactacgacctcaatttcctgggctcaagcgatcctcccacctcaagcctcctgagtagctggaactacaggtgggtgccTGTTTAAC-TTTTTTttttttcattttggttactctttcctgtttttgaaatctttgcgtaccttacattcattaacatattctctttctagaagctttactttccctgtcatacttaggtgtatggtccattatgaattcatttttgtgtttggtgtgaggcaaaggtctagatttagttttttt-cctaattggtccagcaccttttattg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29423945 488 + 173848474 gcccggcctcca-tttttcattttcttaatgatgttttttgatgaatacaagtttccag-ttttgatgaattttatttcatcgactttATTGAtttatttttaaaatttttacactta--------------------------tttatttatttaatagacatgggttctcgctgtgttgcccaggctagagtgcagtgactgttcacaggggctatcattgtgcactacgacctcaatttcctgggctcaagcgatcctcccacctcaagcctcctgagtagctggaactacaggtgggtgccTGTTTAAC-TTTTTttttttctattttggttactctttcctgtttttgaaatctttgcgtaccttacattcattaacatattctctttctagaagctttactttccctgtcatacttaggtgtatggtccattatgaattcatttttgtgtttggtgtgaggcaaaggtctagatttagttttttt-cctaattggtccagcaccttttattg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5224648 481 +   6154872 gcccggcctccg-tttctcattttcttaatgatgttttttgatgaatagaagtttccag-ttttgatgaattttatttcgtcgactttATTGAtttatttttaaaatttttacactta--------------------------tttatttatttaatagacatgggttctcgctgtgttgcccaggctagagtgcagtgactgttcacaggggctatcattgtgcactacgacctcactttcctgggctcaagcgatcctcccacctcaagcctcctgagtagctggaactacaggtgggtgccTGTTTAAC--TTTTTtttttttattttggttactctttcctgtttttgaaatctttgcataccttacattcattaacatattctctttctagaagttttactttccctgtcatacttaggtgtatggtccattatgaattcatttttgtgtttggtgtg------aggtctagatttagttttttt-cctaattgctccagcaccttttattg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74226818 484 + 122973662 gcccggcctcca-tttttcattttcttaatgacggtctttgatgaatagaaggttctag-ttttgatgaattttatttcatcgactttATTGAtttattttttaaatttttacactta--------------------------tttatttatttaatagacatggggtctagctgtgttgcccaggccagagtgcagtgactattcacaggggctgtcattgtgcactatgacctcaatttcctgggctcaagcgatcctcccacctcaagccttctgagtagctggaactacaggtgggtgccTGGTTAAC--TTTTTttttttcattttggttactccttcctgtttttgaaatctttgcgtaccttacattcattaacatatt---tttctagaagctttactctccctatcatacttaggtgtatggtccattatgaattcatttttgtgtttggtgtgaggcaaaggtctagatttagttttttt-cctaattggtccagcaccttttattg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29403517 489 + 172585720 acccagcctcca-ttttttattttcttaatgctg-tttttggtgaatagaagtttctag-ttttgatgaatttta-ttcattgactttattgatttatTTTTAAAAtttttacatttattta----------------------tttatttatttaatagatatggggtctcgctgtgttgcccaggccagagtgcagtggctgttcacaggtgctatcattgtgcactatgacctcaatttcctgggcccaagtgatcctcccacctcaagcctcctgagtagctggaactacaggtgggtgcctggctaac---ctttttttttCATTTTGGCTACTCCTtcctgattttgaaatctttgtgtaccttacgttcattaacatattctctttctagaagctgtactttccctgtcatacttaggtgtatggtccattattaattcatttttgattttggtgtgaggcaaaggtccagatttaatttttttccccaattggtccagcaccttttattg
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2054188 513 -   2996164 acgcagcctccatttttttattttcttaatgctg-tttttggtgaatagaagtttctagtttttgatgaatttta-ttcatcgactttATTGAtttttttttaaaattttacaatttatttatttatttatttatttatttatttttatttatttaatagatatggggtctcgctgtgttgcccaggccagagtgcagtggctgttcacaggtgctatcattgtgcactatgacctcaatttcctgggcccaagtgatcctcccacctcaagcctcctgagtagctggaactacaggtgggtgcctggctaac---ctttttttttCATTTTGGCTACTCCTtcctgattttgaaatctttgtgtaccttacgttcattaacatattttctttctagaagctgtactttccctgtcatacttaggtgtatggtccattattaattcatttttgattttggtgtgaggcaaaggtccagatttaatttttttccccaattggtccagcaccttttattg
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28361214 483 -  71996105 actcagcctcca-ttttttgttttcttaatgctattttttgatgaatagaagtttctag-ttttgatgaattttatttcattgactttATTGAtttatttttaaaatttttaca------------------------------tttatttatttaatagatatgaggtctcactgtgttgcccaggccagagtgcagtggctgttcacaggtgctatcattgtgcactgtgacctcaatttcctgggcccaagtgatcctcccacctcaagcctcctgagtagctggaactacaggtaggtgcttggctaac---ctttatttttCATTTTGGCTACTCCTtcctgattttgaaatctttgtgtactttacgttcattaacatattctctttctagaagctgtactttccctgtcatacttaggtgtatggtccattattaattcattttttattttagtatgaggcaaaggtccagatttaatttttttccccaattggtccagcaccttttattg
i chlSab2.chr17            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25936081 1960 +  26524999 I
e saiBol1.JH378348            272153 1124 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      204598  10 -    285216 I
e cebCap1.NW_016108108v1      271250 319 -    373274 I
e calJac3.chr4             171447152 1586 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=285568.000000
s hg38.chr6_GL000254v2_alt    202947 112 +   4827813 aaaagTTATATCATAAATTTGTAAATGCATTTCTGTCTATTCACCTCGTTTTAACCACTATGTCCA-AAAAGCAGAAAATAGCTGCACTAATGGAAAACCAGTTCACCAGATT
s panTro5.chr6              29190398 112 + 175400573 aaaagTTATATCATAAATTTGTAAATGCATTTCTGTCTATTCACCTCATTTTAACCACTATGTCCA-AAAAGCAGAAAATAGGTGCACTAATGGAAAACCagttcaccagatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29424433 112 + 173848474 aaaagTTATATCATAAATTTGTACATGCATTTCTGTCTATTCACCTCATTTTAACCACTATGTCCA-AAAAGCAGAAAATAGGTGCACTAATGGAAAACCAGTTCACCATATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5225129 112 +   6154872 aaaagTTATATCATAAATTTGTAAATGCATTTCTGTCTATTCACCTCGTTTTAACCACTATGTCCA-AAAAGCAGAAAATAGGTGCACTAATGGAAAACCagttcaccagatt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74227302 112 + 122973662 aaaagTTATATCATAAATTTGTAAATGCATTTCTGTCTATTCACCTCATTTTAACCACTATGTCCA-AAAAGCAGAAAATAGGTGCACTAATGGAAAACCAATTCACCAGATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29404006 112 + 172585720 aaaagTTATATCATAAATTTGTAAGTGCATTTATGTTTGTTCACCTCATTTTAACCACTACGTCCA-AAAAGGAGAAAATAGGTGCACTAATGGAAAACCaattcaccagatt
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2054701 112 -   2996164 aaaagTTATATCATAAATTTGTAAGTGCATTTATGTTTGTTCACCCCATTTTAACCACTACGTCCA-AAAAGGAGAAAATAGGTGCACTAATGGAAAACCaattcaccagatt
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28361697  82 -  71996105 aaaagTTATATCATAAATTTGTAAATGCATTTATGTCTGTTCACCTC-------------------------------ATAGGTGCACTAATGGAAAACCAATTCACCAGATT
i chlSab2.chr17            C 0 C 0
s canFam3.chr35             25938041 112 +  26524999 aAAAGCTGTATCATCAATTTTCAAATGCATATATGTCTCATCACTTCCTTTTAGCT-CTGTGTCCCTAAAAGCAGAAGGTAGATACAGTCATGGAAAACCAGTTCACCAAATT
i canFam3.chr35            I 1960 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e saiBol1.JH378348            272153 1124 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      204598  10 -    285216 I
e cebCap1.NW_016108108v1      271250 319 -    373274 I
e calJac3.chr4             171447152 1586 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=193640.000000
s hg38.chr6_GL000254v2_alt    203059  95 +   4827813 TACTTATTCTGttttttttttaa--gacggagtctccctctgccgtccaggctggagtgc-aatggcatgatctcggcttactgcaac--------------------------ctcctgcctc
s panTro5.chr6              29190510  94 + 175400573 tacttattctgtttttttttt-a--gacggagtctccctctgccatccaggctggagtgc-aatggcatgatctcggcttactgcaac--------------------------ctcctgcctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29424545  94 + 173848474 TACTTATTCTGtttttttttt-a--gacggagtctccctctgccatccaggctggagtgc-aatggcatgatctcggcttactgcaac--------------------------ctcctgcctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5225241  94 +   6154872 tacttattctgtttttttttt-a--gacggagtctccctctgccgtccaggctggagtgc-aatggcatgatctcggcttactgcaac--------------------------ctcctgcctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74227414 119 + 122973662 TACTTAttct-tttttttttt-a--gatggagtctccctctgccatccaggctggagtgc-aatggcatgatctcagcttactgcaacctcctgcctcccggattcaagcgattctcctgcctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29404118  92 + 172585720 tacttg---tttttttttttt-g--gacagagtgtccctctgtcgcccaggctggagtgcaaatggcatgatcttggcttactgcaac--------------------------ctcctgcctc
i rheMac8.chr4             C 0 I 76
s macNem1.NW_012011356v1     2054813  91 -   2996164 tacttg----ttttttttttt-g--gacagagtgtccctctgtcgcccaggctggagtgcaaatggcatgatctcggcttactgcaac--------------------------ctcctgcctc
i macNem1.NW_012011356v1   C 0 I 76
s chlSab2.chr17             28361779  97 -  71996105 TACTTGGtttttttttttttt-gtcgccagagtctccctctgtcgcccaggctggagtgcaaatggcatgatctcggcttactgcaac--------------------------ctcctgcctc
i chlSab2.chr17            C 0 I 26
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25938153   0 +  26524999 C
e saiBol1.JH378348            272153 1124 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      204598  10 -    285216 I
e cebCap1.NW_016108108v1      271250 319 -    373274 I
e calJac3.chr4             171447152 1586 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=61673.000000
s hg38.chr6_GL000254v2_alt    203154 46 +   4827813 agcctcctgagtagctgggactacaggtgtgcaccaccatgtctgg
s panTro5.chr6              29190604 46 + 175400573 agcctcctgagcagctgggactacaggtgtgcaccaccatgtctgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29424639 46 + 173848474 agcctcctgagtagctgggactacaggtgtgcaccaccatgtctag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5225335 46 +   6154872 agcctcctgagtagctgggactacaggtgtgcaccaccatgtctgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74227533 46 + 122973662 agcctcccaaatagctgggactacaggtgtgcgccaccatgtctgg
i nomLeu3.chr1a            C 0 I 163
s chlSab2.chr17             28361902 46 -  71996105 agcctcccgagtagctgggactacaggtgtgcaccaccatgcctgg
i chlSab2.chr17            I 26 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25938153  0 +  26524999 C
e saiBol1.JH378348            272153 1124 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      204598 10 -    285216 I
e cebCap1.NW_016108108v1      271250 319 -    373274 I
e calJac3.chr4             171447152 1586 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macNem1.NW_012011356v1     2054904 76 -   2996164 I
e macFas5.chr4              29062559 5426 - 170955103 I
e rheMac8.chr4              29404210 76 + 172585720 I

a score=-2998.000000
s hg38.chr6_GL000254v2_alt    203200 4 +   4827813 c--tat
s panTro5.chr6              29190650 6 + 175400573 cttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29424685 1 + 173848474 c-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5225381 4 +   6154872 c--tat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74227742 4 + 122973662 --cTAt
i nomLeu3.chr1a            I 163 C 0
s chlSab2.chr17             28361948 4 -  71996105 --ctat
i chlSab2.chr17            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25938153 0 +  26524999 C
e saiBol1.JH378348            272153 1124 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      204598 10 -    285216 I
e cebCap1.NW_016108108v1      271250 319 -    373274 I
e calJac3.chr4             171447152 1586 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macNem1.NW_012011356v1     2054904 76 -   2996164 I
e macFas5.chr4              29062559 5426 - 170955103 I
e rheMac8.chr4              29404210 76 + 172585720 I

a score=206457.000000
s hg38.chr6_GL000254v2_alt    203204 248 +   4827813 ttttttttttttaagacagtgtctggctc-tgtcgcccaggctggagtgcaatggcgtgatctcggctcattgcaacctccacctccccggtccaagcaatactctttcctcagcctcctgagtagctgggactacgggcagccaccaccacgccaccacgaccagctgatttttatatttttaatagagacggggtttgaccatgttggccaggatggtctcgctctcttgccctcgtgatccccgca
s panTro5.chr6              29190656 248 + 175400573 ttttttttttttaagacagtgtctggctc-tgtcgcccaggctggagtgcaatggcgtgatctcggctcattgcaacctccacctcccaggtccaagcaatactctttcctcagcctcctgagtagctgggactacgggcagccgccaccacgccaccacgaccagctgatttttatatttttaatagagacggggtttcaccatgttggccaggatggtctcgctctcttgcccttgtgatccccgca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29424686 245 + 173848474 ---tttttttttagtacagtgtctggctcttgtcg-ccaggctggagtgcaatggcgtgatctcggctcattgcaacctccacctccccggtccaagcaatactctttcctcagcctcctgagtagctgggactacgggcagccgccaccacgccaccacgaccagctgatttttatatttttaatagagacggggtttcaccatgttggccaggatggtctcgctctcttgccctcgtgatccccgca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5225385 248 +   6154872 ttttttttttttaagacagtgtctggctc-tgtcgcccaggctggagtgcaatggcgtgatcttggctcatagcaacctccacctccccggtccaagcaatactctttcctcagcctcctgagtagctgggactacgggcagccgccaccacgccaccacgaccagctgatttttatatttttaatagagacagggtttcaccatgttggccgggatggtctcgctctcttgccctcgtgatccccaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74227746 234 + 122973662 tttcttttttttaagacagtgtctggctc-tgtcgcccaggctggagtgcaatggtgtgatctcggctcactgcaacctccacctccctggtccaagcaatactcttgcctcggcctcccgagtagctgggactataggcagccgccaccacac--------ccagctaattttta------taatagacacagggtttcactatgttggccaggatggtctcgctctcttgtcctcgtgatcccccca
i nomLeu3.chr1a            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25938153   0 +  26524999 C
e saiBol1.JH378348            272153 1124 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      204598  10 -    285216 I
e cebCap1.NW_016108108v1      271250 319 -    373274 I
e calJac3.chr4             171447152 1586 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e chlSab2.chr17             28361952   0 -  71996105 C
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macNem1.NW_012011356v1     2054904  76 -   2996164 I
e macFas5.chr4              29062559 5426 - 170955103 I
e rheMac8.chr4              29404210  76 + 172585720 I

a score=58582.000000
s hg38.chr6_GL000254v2_alt    203452 54 +   4827813 ccttggcctcccaaagtgctgggattacaggcatgagccaccgcacgcggccta
s panTro5.chr6              29190904 54 + 175400573 ccttagcctcccaaagtgctgggattacaggcatgagccaccgcacgcggccta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29424931 54 + 173848474 ccttggcctcccaaagtgctgggattacaggcatgagccaccgcacgcggccta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5225633 54 +   6154872 ccttggcctcccaaagtgctgggattacaggcatgagccaccgcgcgtggccta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74227980 54 + 122973662 ccttggcctcccaaagtgctgggattacaggcgtgagccactgcgcccggccTT
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378348            273277 54 -    375362 ccttagcctcccaagtagctggggttagcagcgcacatcaccacacctggctaa
i saiBol1.JH378348         I 1124 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25938153  0 +  26524999 C
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      204598 10 -    285216 I
e cebCap1.NW_016108108v1      271250 319 -    373274 I
e calJac3.chr4             171447152 1586 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e chlSab2.chr17             28361952  0 -  71996105 C
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macNem1.NW_012011356v1     2054904 76 -   2996164 I
e macFas5.chr4              29062559 5426 - 170955103 I
e rheMac8.chr4              29404210 76 + 172585720 I

a score=383683.000000
s hg38.chr6_GL000254v2_alt    203506 134 +   4827813 ttttttgtatttttagtagagatggagtttcaccatgttggccagggtggtcttaaactcctgacctcaagtgatccgcccgcctcagcctcccaaagtgctgggattacaagtgtgagccaccac-acaaggcc
s panTro5.chr6              29190958 134 + 175400573 ttttttgtatttttagtagagatggagtttcaccatgttggccggggtggtcttaaactcctgacctcaagtgatccgcccacctcagcctcccaaagtgctgggattacaagtgtgagccaccac-acgaggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29424985 134 + 173848474 ttttttgtatttttagtagagatggagtttcaccatgttggccggggtggtcttaaactcctgacctcaagtgatccgcccgcctcagcctcccaaagtgctgagattacaagtgtgagccaccac-acgaggcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5225687 134 +   6154872 ttttttgtatttttagtagagatggagtttcaccatgttggccggggtggtcttaaactcctgacctcaagtgatccgcccgcctcagcctcccaaagtgctgggattacaagtgtgagccaccac-acgaggcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74228034 134 + 122973662 Ttttttgtatttttagtagagatggagtttcgccatgtcagccagagtggtcttaaactcctgacctcaaatgatccacccgcctcagcctcccaaagtgctgggattacaggtgtgagccaccac-accgggcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29404286 134 + 172585720 ttttttgtatttttagtacagatggggtttcaccgtgttggccagggtgttctcaaactcctgatctcaagtgatacgcctgcctcagcctcccaaagtgctgggattacaggtgtgagccaccgt-gcctggcc
i rheMac8.chr4             I 76 C 0
s macNem1.NW_012011356v1     2054980 134 -   2996164 ttttttgtatttttagtacagatggggtttcaccgtgttggtcagggtgttctcaaactcctgatctcaagtgatacgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccaccat-gcctggcc
i macNem1.NW_012011356v1   I 76 C 0
s chlSab2.chr17             28361952 134 -  71996105 ttttttgtatttttagtacagatggggtttcaccttgttggccagggtgttctcaaactcctgatctcaagtgatatgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccaccat-gcctggcc
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378348            273331 133 -    375362 ttttttgtatttttagtagacacagggtttcactatgttggccagaatggtctcaaactcctgacctc--gtgatccacccatgtcagcctcccaaagtgctgggattacaggcatgatccaccacaaccagGCT
i saiBol1.JH378348         C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25938153   0 +  26524999 C
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      204598  10 -    285216 I
e cebCap1.NW_016108108v1      271250 319 -    373274 I
e calJac3.chr4             171447152 1586 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=220930.000000
s hg38.chr6_GL000254v2_alt    203640 90 +   4827813 TACTTGTTCTTTTTAACTAATTATAACATTTACAGCAACTC--ATATGTTGAAGCGGTTTTAACAGCTTTAAAAGGTTTCTGTGGGATTATC
s panTro5.chr6              29191092 90 + 175400573 tacttgttctttttaactaattataacatttacagcaactc--atatgttgaagtggttttaacagctttaaaaggtttctgtgggattatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29425119 90 + 173848474 Tacttgttctttttaactaattataacatttacagcaactc--atatgttgaagtggttttaacagctttaaaaggtttctgtgggattatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5225821 90 +   6154872 tacttgttctttttaactaattataacatttacagcaactc--atatgttgaagtggttttaacagctttaaaaagtttctgtgggattatc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74228168 89 + 122973662 TGC-TGTTCTTTTTAACCAATTATAACATTTACAGCAACTC--ATATGTTGAAGTGGTTTTAACAGCTTTAAAAGGTTTCTGTAGGATTATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29404420 90 + 172585720 tacttgttctttttaactaattataaaatttataacaactc--atatgttgaagtgattttaacagctttaaaagatttctgtggcattatc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2055114 90 -   2996164 tacttgttctttttaactaattataaaatttataacaactc--atatgttgaagtgattttaacagctttaaaagatttctgtggcattatc
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28362086 90 -  71996105 TACTTGTTCTTTTTAACTAATTATAAAATTTATAACAACTC--ATATGTTGAAGTGATTTTAACAGCTTTAAAAGATTTCTGCGGCATTATC
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378348            273464  2 -    375362 TA------------------------------------------------------------------------------------------
i saiBol1.JH378348         C 0 C 0
s canFam3.chr35             25938153 92 +  26524999 TGCTTGtatattttaattaattataaaatttacattaattCATATATGTTGGGGTGGTTTTGGCAGCTTTTAAAGATTTCTGTGAGGTTCTA
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      204598 10 -    285216 I
e cebCap1.NW_016108108v1      271250 319 -    373274 I
e calJac3.chr4             171447152 1586 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=90068.000000
s hg38.chr6_GL000254v2_alt    203730 20 +   4827813 ATTGACC-----TGTTTTTACTTTG
s panTro5.chr6              29191182 20 + 175400573 attgacc-----tgtttttactttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29425209 20 + 173848474 attgacc-----tgtttttactttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5225911 20 +   6154872 attgacc-----tgtttttactttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74228257 20 + 122973662 ATTGACC-----TGTTTTCACTTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29404510 20 + 172585720 attgacc-----tgtttttactttg
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2055204 20 -   2996164 attgacc-----tgtttttactttg
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28362176 18 -  71996105 ATTGACC-----TGTTTTTAC--TG
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378348            273466 19 -    375362 -TTGACC-----TGTTTTTACTTTG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      271569 20 -    373274 ATTGACC-----TGTTTTTACTTTG
i cebCap1.NW_016108108v1   I 319 C 0
s aotNan1.NW_018494050v1      204608 20 -    285216 ATTGACC-----TGTTTTTACTTTG
i aotNan1.NW_018494050v1   I 10 C 0
s canFam3.chr35             25938245 24 +  26524999 ATGGACCATTAAGATTATTATTTG-
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e calJac3.chr4             171447152 1586 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=465973.000000
s hg38.chr6_GL000254v2_alt    203750 83 +   4827813 TCTTAGTGATAGCTTTGTAGGAAAGA-TTAATTTTTCCTTAGCCCAGCAGAGAGAGGTGAGACTGATGGACATAAAAAGAAAAT
s panTro5.chr6              29191202 83 + 175400573 tcttagtgatagctttgtaggaaaga-ttaatttttcCTTAGCCCAGCAGAGAGAGGTGAGACTGATGGACATAAAAAGAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29425229 83 + 173848474 tcttagtgatagctttgtaggaaaga-ttaatttttcCTTAGCCCAGCAGAGAGAGGTGAGACTGATGGACATAAAAAGAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5225931 83 +   6154872 tcttagtgatagctttgtaggaaaga-ttaatttttcCTTAGCCTAGCAGAGAGAGGTGAGACTGATGGACATAAAAAGAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74228277 83 + 122973662 TCTTAGTGATAGCTTTGAAGGGAAGA-TTAATTTTTCCTTAGCCCAGCAGAGAGAGGTGAGACTGATGGACATAAAAAGAAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29404530 83 + 172585720 tctcagtgatagctttgtagggaaga-ttaatttttcctgagcccagcagagagaggtgagactgatggacataaaaataatat
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2055224 83 -   2996164 tctcagtgatagctttgtagggaaga-ttaatttttcctgagcccagcagagagaggtgagactgatggacataaaaataatat
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28362194 83 -  71996105 TCTTAGTGATAGCTTTGTAGGGAAGA-TTAATTTTTCCTGAGCCCAGCAGAGAGAGGTGAGACTGATGGACATAAAAAGAATAT
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             171448738 82 - 171630274 TCTTAATGATGGCTTTGTAGGGAAGA-TTAGTCTTTACTTAGTCCAGCAAAGAG-GGTGAGACTGATAGACATAAAAAGAATAT
i calJac3.chr4             I 1586 I 332
s saiBol1.JH378348            273485 82 -    375362 TATTAATGATAGCTTTGTAGGGAAGA-TTAGTCTTTCCTTAGTCCAGCAAAGAG-GGTGAGACTGTTAGACATAAAAAGAATAT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      271589 79 -    373274 TCTTAATGATAGCTTTGTAGGGAAGA-TTAGTCTTTCCTTAGTCCAGCAAAGAG-GGTGAGACTGATGGACATAAA---AATGT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      204628 79 -    285216 TCTTAATGATAGCTTTGTAGG---GA-TTAGTCTTTCCTTAGTCCAGCAAAGAG-GGTGAGACTGATGGACATAAAAAGAATAT
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25938269 80 +  26524999 TCTTCATGATGGCATTTTAGGGAAGATTTAATTTGTCCTTAGCTAAGCAAA----GGACAGATTGAGAGACATAAAAAGAATAT
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=117084.000000
s hg38.chr6_GL000254v2_alt    203833 24 +   4827813 ACTCAAGAAAATATATTAATCAAT
s panTro5.chr6              29191285 24 + 175400573 ACTCAAGAAAATATATTAATCAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29425312 24 + 173848474 ACTCAAGAAAATATATTAATCAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5226014 24 +   6154872 ACTCAAGAAAATATATTAATCAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74228360 24 + 122973662 ACTCAAGAAAATATATTGATCAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29404613 24 + 172585720 actcaagaaaatgtattaatcaat
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2055307 24 -   2996164 actcaagaaaatgtattaatcaat
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28362277 24 -  71996105 ACTCAAGAAAATGTATTAATCAAT
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             171449152 20 - 171630274 ACTCAAGAAAAGATACTAAT----
i calJac3.chr4             I 332 C 0
s saiBol1.JH378348            273567 20 -    375362 ACTTAAGAAAATATATTAAT----
i saiBol1.JH378348         C 0 I 218
s cebCap1.NW_016108108v1      271668 24 -    373274 ACTCAAGAAAAGATATTAATCAAT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      204707 24 -    285216 ACTCAAGAAAAGATATTAATCAGT
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25938349 17 +  26524999 ATTCATGAAAGTTTATT-------
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=777697.000000
s hg38.chr6_GL000254v2_alt    203857 142 +   4827813 AGTGTATTTTATTATTAGAATACATCCATAAGAATCCTTTATATTTATGCCTACACTCTTCATGAATCTCTTCTTGTGGAC-ATATTTATTTACTTATACATTTCTTAATTCAACATATATTTATTGAATACATTTTTGAATA
s panTro5.chr6              29191309 142 + 175400573 AGTGTATTTTATTATTAGAATACATCCATAAGAATCCTTTATATTTATGCCTACACTCTTCATGAATCTCTTCTTGTGGAC-ATATTTATTTACTTATACATTTCTTAATTCAACATATATTTATTGAATACATTTTTGAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29425336 142 + 173848474 AGTGTATTTTATTATTAGAATACATCCATAAGAATCCTTTATATTTATGCCTACACTCTTCATGAATCTCTTCTTGTGGAC-ATATTTATTTACTTATACATTTCTTAATTCAACATATATTTATTGAATACATTTTTGAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5226038 142 +   6154872 AGTGTATTTTATTATTAGAATACATCCATAAGAATCCTTTATATTTATGCCTACACTCTTCATGAACCTCTTCTTGTGGAC-ATATTTATTTACTTATACATTTCTTAATTCAACATATATTTATTGAATACATTTTTGAATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74228384 142 + 122973662 AGTGTATTTTATTATTAGAATACATCCATAAGAATCCTTTATATTTATGCCTACGCTCTTCATGAATCTCTTCTTGTGGAC-ATATTTATTTACTTATCCATTTGTTAATTCAACATATATTTATTGAATACATTTTTGAATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29404637 142 + 172585720 aaTGTATTTTATTATTAGAATACATCCATAAGAATCCTTTATATTTATGCATATGCTCTTCATGAATCTCTTCTTGTGGAT-ATATTTATTTACTTATACATTTGTTAATTCAACGTATATTTATTGAATAAATTTTTGAATA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2055331 142 -   2996164 aaTGTATTTTATTATTAGAATACATCCATAAGAATCCTTTATATTTATGCATATGCTCTTCATGAATCTCTTCTTGTGGat-atatttatttacttatacatttgttaattcaacatatatttattGAATAAATTTTTGAATA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28362301 142 -  71996105 AATGTATTTTATTATTAGAATACATCCATAAGAATCCTTTATATTTATGCATATGCTCTTCATGAATCTCTTCTTGTGGAT-GTATTTATTTACTTATACATTTGTTAATTCAACGTATATTTATTGAATAAATTTTTGAATA
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             171449172 143 - 171630274 AATGTATTTTACTGTAAGAATGCATCCATAAGAATCCTCTATATTTAGGTGTATGCTCTTCATGAATCTCTTCTTGTAGATAATATTTATTTTCTTGTACATATGTTAATTCAACGTATAGTTATTGAATAAATTTTTGAATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            273805 140 -    375362 AATGTATTTTACTGTAAGAATCTATCCATAAGAATCCTTTATATTTAGGTGTATGCTCTTCATCAATCTCTTCTTGTAG---ATATTTATTTTCTTGTACATTTGTTAATTCAACATATATTTATTCAATAAATTTTTGAATA
i saiBol1.JH378348         I 218 C 0
s cebCap1.NW_016108108v1      271692 139 -    373274 AATGTATTTTACTGTAATAATACATCCATAAGAATCGTTTATATTTAGGTGTATGCTCTTCATCAATTTCTTCTTGTAGATAATATTTATTTTCATGTACATTTATTAATTCAACATA----TATTGAATAAATTTTTGAATA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      204731 143 -    285216 AATGTATTTTACTGTAAGAATGCATGCATAAGAATCCCTTTTATTTAGGTGTATGCTCTTCATGAATCTCTTCTTGTAGATAAtatttattttcttgtacatttattaattcaacatatatttattgaataattttttGAATA
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25938366 117 +  26524999 ---------TATTATAAGAATATATCCCTAAGAATCCTTTATATTTGGGCATAGGTTCTTCATGGACAGCTTTTTGTTGAT-ATATTTATTTACTCAGTTATTCGTGAATTCAACAAA----TACTGAATA------------
i canFam3.chr35            C 0 I 20
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=610030.000000
s hg38.chr6_GL000254v2_alt    203999 129 +   4827813 TGGCAATATACATTCATATttgttattattattattatta--cgagatggagtttcactctgttgcccaggctggagtgcagtggcgccatctcagctcactgcaacctctgcctcacaggttcaagggat
s panTro5.chr6              29191451 129 + 175400573 TGGTAATATACATTCATATttgttattattattattatta--tgagatggagtttcactctgttgcccaggctggagtgcagtggcgccatgtcagctcactgcaacctctgcctcacaggttcaagggat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29425478 129 + 173848474 TGGTAATATACATTCATATttgttattattattattatta--Cgagatggagtttcactctgttgcccaggctggagtgcagtggcgccatgtcagctcactgcaacctctgcctcacaggttcaagggat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5226180 129 +   6154872 TGATAATATACATTTGCATttgttattattattattatta--Cgagatggagtttcactctgttgcccaggctggagtgcagtggcgccatctcagctcactgcaacctctgcctcacaggttcaagggat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74228526 129 + 122973662 TGGTAATATACATTCATATttattattattattattatta--tgagatggagtcttactctgttgcccaggctggagtgcaatggcaccatctcagctcactgcaacctctgcctcacaggttcaagggat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29404779 129 + 172585720 TGGTAATATACATTCATATttattatcattattattatta--tgagacagagtttcattctgttgcccagggtggagtgcaatggcaccatctcagctcactgcaacctctgcctcacaggttcaagggat
i rheMac8.chr4             C 0 I 7
s macNem1.NW_012011356v1     2055473 129 -   2996164 TGGTAATAAACATTCATATttattatcattattattatta--tgagacagagtttcattctgttgcccagggtggagtgcaatggcaccatctcagctcactgcaacctctgcctcacaggttcaagggat
i macNem1.NW_012011356v1   C 0 I 7
s chlSab2.chr17             28362443 129 -  71996105 TGGTAATATACATTCATATttattatcattattattatTA--tgagacacagtttcattctgttgcccagggtggagtgcaatggcaccatctcagctcactgcaacctctgcctcacaggttcaagggat
i chlSab2.chr17            C 0 I 7
s calJac3.chr4             171449315 122 - 171630274 TGATAATATACATCCATATGTATTATTATTATTTTC---------GGcggagttttactctgttgcacaggttggagtgcaatggcgccacctctgctcactgcaacctccacctcctgggttccagcgat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            273945 131 -    375362 TGATAACATACATTCATATGtattattattattattattatttgagacggagttttactctgtcacccaggctggagtgcggtggtgccatctctgctcactgccacctccacctcctggtttccagcaat
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      271831 119 -    373274 TGATAATATACATTCGTATGTATTATTAtt------------tgagatggagttttactctgtcgcccagtttggagtgcagtggtgccatctctgctcactgcaacctccacctcctggtttccagcgat
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      204874 125 -    285216 TGATAATATACATTCATATGTATTATTATTATTAtt------tgagacagagttttactttgtcgcacaggctggagtgcaatggtgccatctctgctcactgcagcctccacctcctgggttccagcgat
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25938483  20 +  26524999 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=19719.000000
s hg38.chr6_GL000254v2_alt    204128 15 +   4827813 tctcgcgcctcagct-----------
s panTro5.chr6              29191580 15 + 175400573 tctcgcgcctcagct-----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29425607 15 + 173848474 tctcgcgcctcagct-----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5226309 15 +   6154872 tctcgcgcctcagct-----------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74228655 15 + 122973662 tctcacgcctcagct-----------
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171449437 26 - 171630274 tctcctgccttgacctcccgagtggc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            274076 23 -    375362 t---ctgccttggcctctagagtcgt
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      271950 26 -    373274 tctcctgccttggcctcccgagtggc
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      204999 26 -    285216 tctcctgccttggcctcccgagtggc
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25938483 20 +  26524999 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e chlSab2.chr17             28362572  7 -  71996105 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macNem1.NW_012011356v1     2055602  7 -   2996164 I
e macFas5.chr4              29062559 5426 - 170955103 I
e rheMac8.chr4              29404908  7 + 172585720 I

a score=786970.000000
s hg38.chr6_GL000254v2_alt    204143 180 +   4827813 tgggaatacaggggtccgccaccacgcccatctatttttttgtatttttaatagagacagggtttcaccatgttggccagggtggtctt-gaactcctgacctcaggcaatccgcctgcctcggcgtcccaaagtgctgggattataggcatgagccaccgtgcccagcctcatatgtata
s panTro5.chr6              29191595 180 + 175400573 tgggaatacaggggtccgccaccacacccatctatttttttgtatttttaatagagacagggtttcaccatgttggccagggtggtctc-gaactcctgacctcaggcaatccgcccgcctcggcgtcccaaagtgctgggattataggcatgagccaccgtgcccagcctcatatgtata
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29425622 179 + 173848474 tgggaatacaggggtccgccaccacgcccatcta-ttttttgtatttttaatagagacagggtttcaccatgttggccagggtggtctc-gaactcctgacctcaggcaatccacccgcctcggcgtcccaaagtgctgggattataggcatgagccaccgtgcccagcctcatatgtata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5226324 180 +   6154872 tgggaatacaggggtccgccaccacgcccatctatttttttgtatttttaatagagacagggtttcaccatgttggccagggtggtctc-gaactcctgacctcaggcaatccgcccgcctcggcgtcccaaagtgctgggattataggcatgagccaccgtgcccagcctcatatgtata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74228670 180 + 122973662 tgggaatacaggggcccaccaccacgcccatctatttttttgtatttttaatagagacggggtttcaccatgttggccaggctagtctg-gaacgcctgacctaaggcaatccgcctgcctcagcgtcccaaagtgctgggattataggcgtgagccaccgtgcccgacctcatatgtata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29404915 179 + 172585720 tgggaatacaggggcctgccaccacgcccatcta-ttttttgtatttttagtagagatggggtttcactattttggccaggctggtctc-gaactcctgacctcaggcaatccgcccgccttggccttccaaagtgctgggatttggggcgtgagccaccgcacctggcctcatatgtata
i rheMac8.chr4             I 7 C 0
s macNem1.NW_012011356v1     2055609 179 -   2996164 tgggaatacaggggcctgccaccacgcccatcta-ttttttgtatttttagtagagatggggtttcactattttggccaggctggtctc-gaactcctgacctcaggcaatccgcccgccttggccttccaaagtgctgggatttggggcgtgagccaccgcacctggcctcatatgtata
i macNem1.NW_012011356v1   I 7 C 0
s chlSab2.chr17             28362579 179 -  71996105 tgggaatacaggggcctgccaccacacccatcta-ttttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctc-gaactcctgacctcaggcaatccgcccgccttggccttccaaagtgctgggatttggggcgtgagccaccgcacctggcctcatatgtata
i chlSab2.chr17            I 7 C 0
s calJac3.chr4             171449463 156 - 171630274 tgggactacagaagcgtgccagcatgcccatctc-atttttgta-ttttagtagagatggggtttcaccatgttggccaggctgatctt-gaactcct----------------------tcggcctcccaaagtgctgagattacaggcatgagccagtgcgccctgccTCAtatatgta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            274099 156 -    375362 tgggactacagaagcctgccaccacacccatctc-atttttgtatttttagtagtgatggggtttcaccatgttggccaggctggtctt-gaacacct----------------------tcggcctcccaaagtgctgggattacaggcatgagccagtgcgccctgccTCAC-TGTGTA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      271976 156 -    373274 tggaactacagaagcctgccaccatacccatcta-atttttgtatttttagtagagacggagtttcaccatgttgaccaggctggtcttggaacacct----------------------tcggcctcccaaagtgctcgaattacaggcatgagccagtgtgccctgccTCA--TGTGTA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      205025 155 -    285216 tgggactacagaagcttgccaccacgcccatctc-atttttgtatttttagtagagacggggtttcaccatgttggccaggctggtctt-gaactcct----------------------tcggcctcccaaagtgctgagattacaggcatgatccagtgcgccctgccTCA--TGTGTA
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25938483  20 +  26524999 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=861866.000000
s hg38.chr6_GL000254v2_alt    204323 162 +   4827813 atttttagttaAATTAAtaaattaatatttatggttttcatcattatgactttgtaatatttttcacagctgagctcca-tggtataccataattacctt------ctttgacaaccttttgttcttcctgggattaataattgcctcctg-ttctttgcttacttttct
s panTro5.chr6              29191775 153 + 175400573 atttttagt--------taaattaatatttatggttttcatcattatgactttgtaatatttttcacagctgagctcca-tggtataccat-attacctt------ctttgacaaccttttgttcttcctgggattaataattgcctcctg-ttctttgcttacttttct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29425801 153 + 173848474 atttttagt--------taaattaatatttatggttttcatcattatgactttgtaatatttttcacagctgagctcca-tggtataccat-attacctt------ctttgacaaccttttgttcttcctgggattaataattgcctcctg-ttcttagcttacttttct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5226504 154 +   6154872 atttttagt--------taaattaatatttatggttttcatcattatgactttgtaatatttttcacagctgagctcca-tggtataccataattacctt------ctttgacaacattttgttcttcctgggattaataattgcctcctg-ttctttgcttacttttct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74228850 154 + 122973662 atttttagt--------taaattaatatttatggttttcatcattatgactttgtaatattttaaacagctgacctaca-tggtatgccataattacctt------ctttgacaaccttttgttcttcctgggattaataattgcctcctg-ttctttgcttacttttcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29405094 154 + 172585720 atttttggt--------tgaattaatatttatagttttcatcattatgactttgtaatatttttcacagctgagctaca-tggtataccataattacctt------ctttgacaaccttttgttcttcctgggattaataattgcctcctg-ttctttgcttacttttct
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2055788 154 -   2996164 atttttggt--------tgaattaatatttatagttttcatcattatgactttgtaatatttttcacagctgagctaca-tggtataccataattacctt------ctttgacaaccttttgttcttcctgggattaataattgcctcctg-ttctttgcttacttttct
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28362758 154 -  71996105 atttttagt--------taaattaatatttatggttttcatcattatgactttgtaatatttttcacagctgagctaca-tggtataccataattacctt------ctttgataaccttttgttcttcctgggattaataattgcctcctg-ttctttgcttacttttct
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             171449619 155 - 171630274 acttttagt--------taaattaatatttatagttttcatcattatgactttgtaatatttttcacagcggagctacaatagtataccgtaattacctt------ctttgacaaccgtttgttcttcctgggattaattattaccacctg-tcctatgcttacttttct
i calJac3.chr4             C 0 I 1563
s saiBol1.JH378348            274255 155 -    375362 ATttttagt--------taaattattatttatagtttttattgttacgactttgcagtatttttcacagctgagctataatagtataccataattacctt------ctttgacaaccgtttgttctccctgggattaattgttaccacctg-ttttgtgcttccttttct
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      272132 155 -    373274 ATttttagt--------taaattaatatttataattttcatcattatgactttgtagtatttttcacagctgagctacaatagtataccataattacctt------ctttgacaaccgtttgttcttcctgggattaattattaccacctg-ttctttgcttactttcct
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      205180 155 -    285216 ACttttagt--------caaattaatatttatagttttcattgttatgactttgtgatatttttcacagctgagctacagtagtataccataattacctt------ccttgacaatcgtttgttcttcctggaattaattattaccacctg-ttctttgcttacttttct
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25938503 148 +  26524999 ATTTTTAGT--------TAAATCAGTGTTGA--GTTCTCGTCATTATGACTTCCTACTATTTTCC---------TAATA-CGATACACCATCATTACTTTTCCTGCCTTTGACAGCCTTTGCTCCTGCAGCAGACC--TACCTGCTTCCTGTTTCTCTGCCGGCTCTTCC
i canFam3.chr35            I 20 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=1295382.000000
s hg38.chr6_GL000254v2_alt    204485 304 +   4827813 aaatatttattcctaattcaataccagctttctgacactattttctcgtcaaatgcatgaggcagtatgtcagttccattttcccccattggaaacaaccctcgtttagccc-tcttttttctattccaccgtagactgattgccttctagcctggtagctcagcagttgccccggagttttttcctttacctttctcctgtgttaggtcccc-agtcaccggatttcatat-ttcctttttcttagtttaattccctagttagtggacaattctccagaagctttctgagaaaaggtacttgggag
s panTro5.chr6              29191928 304 + 175400573 aaatatttattcctaattcaataccggctttctgacactattttctggtcaaatgcatgaggcagtatgtcagttccattttcccccattggaaacaaccctcgtttagccc-tctttcttctattccaccgtagactgattgccttctagcctggtagctcagcagttgcccccgagttttttcctttacctttctcctgtgttaggtcccc-agtcaccggatttcatat-ttcctttttcttagtttaattccctagttagtggacaattctccagaagctttctgagaaaaggtacttgggag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29425954 304 + 173848474 aaatatttattcctaattcaataccagctttctgacactattttctggtcaaatgcatgaggcagtatgtcagttccattttcccccattggaaacaaccctcgtttagccc-tctttcttctattccaccgtagactgattgccttctagcctggtagctcagcagttgcccccgagttttttcctttacctttctcctgtgttaggtcccc-agtcaccggatttcatat-ttcctttttcttagtttaattccctagttagtggacaattctccagaagctttctgagaaaaggtacttgggag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5226658 304 +   6154872 aaatatttattcctaattcaatgccagctttctgacactattttctggtcaaatgcatgaggcagtatgtcagttccattttcccccattggaaacaaccctcgtttagccc-tctttcttctattccactgtagactgattgctttctagcctggtagctcagcagttgccccggagttttttcctttacctttctcctgtgttaggtcccc-agtcactggatttcatat-ttcctttttcttagtttaattccctagttagtggacaattctccagaagctttctgagaaaaggtacttgggag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74229004 304 + 122973662 aaatatttattcctaattcagtaccagctttctgacactattttctggtcaaatgcatgaggcaatatgtcagttcaattttcccccattggaaacaaccctcgtttagccc-tctttcttctattccaccatagactgattgccttctagcctggtagctcagcagttgccccggaattttttcctttacctttctcctgtcttaggtcccc-agtcaccggatttcatat-ttcctttttcttagtttaattccttcgttagtggacaattctccagaagctttctgagaaagggtacttgggag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29405248 304 + 172585720 aaatatttattcctaattcaataccagctttcagagactattttctggtcaaatgcatgaggcaatatctcagttccattttccccccttggaaacaaccgtcgtttagccc-tctttcttctattccaccatagactgattgccttctaggctggtagctcagcaagtgccctggaattttttcctttacctttctcctgtgttagatccct-agtcactggatttcatat-ttccgttgtcttagtttagttccctgtttagtggacaattctccagaagctttctgagaaaggatacatgggag
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2055942 304 -   2996164 aaatatttattcctaattcaataccagctttcagagactattttctggtcaaatgcatgaggcaatatgtcagttccatttcccccccttggaaacaaccgtcgtttagccc-tctttcttctattccaccatagactgattgccttctaggctggtagctcagtaagtgccctggaattttttcctttacctttctcctgtgttagatccct-agtcactggatttcatat-ttccgttgtcttagtttagttccctgtttagtggacaattctccagaagctttctgagaaaggatacatgggag
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28362912 304 -  71996105 aaatatttattcctaattcaataccagctttcagacactattttctggtcaaatgcatgaggcaatatgtcagttccattttcccctcttggaaacaaccgtcgtttagccc-tctttcttctattccaccatagactgattgccttctagtctggtagctcagcaagtgccctggaattttttcctttacctttctcctgtgttaggtccct-agtcactggatttcatat-ttccgttgtcttagtttagttcccggtttagtggacaattctccagaagctttctgagaaaggatacatgggag
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378348            274410 299 -    375362 aaatacttattgct-attcattgccagctttctgacaatattttctggtcaaatgcatgaggca--atgtcagttccagtttcccc---tggaaacaaccttcgttgagcccttctttcttctattccaccatagactgattgccatctaggctggcagctcagcaggtgctggcgaattttttcttacacctttcttctatgttacgtcccc-aatcactggattacatat-ttcctttttcttagtttagttccttgtttagtggacaattctctagaagctttctgagcaaaggtgcatgggag
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      272287 298 -    373274 aaatacttactgct-attcattaccagctttctgacactattttctcgtcaaatgcatgaggca--atgtcagttccagtttcccc---tggaaacaaccttcgtttagcccttctttcttctattccaccgtagactgattgccatctaggctggcagctcagcaggtgctggggaattttttccttcacctttcttctatgttacgtcccc-aatcactggattatgtat-ttcctttttcttagtttaattccctgtttagtggacaattctccagaag-tttctgagcaaaggtgcatgggag
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      205335 300 -    285216 aaatatttatttctaattcaataccagctttctgacagtattttctggtcaaatgcatgaggca--atgtcagttccagtttccac---tggaaatgaccttcgttcagctcttctttctactattccaccgtagactgattgccttctaggctggcagctcggcaggtgctggggaattttttccttcacctttcttctatgttaggtcccc-aatcactggatttcatat-ttcttttttcttaatttaattccctgtttagtggacaattctccagaagctttctgagcaaaggtgcatgggag
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25938651 199 +  26524999 CTGCGCTGAATCCTGAGCCGGCAACCGCTTGCTGATG----TCTGTGGT------CGCGGGGC-----------------------------------CCCGCGTCTGCCCC-----------------------------------------------CTCCTCACGCCCCCTGGAACTCGTCC-------------CTGCGGCGGGTCCCCTAGTCCC--GGTTTCACATCTTCCGCTTTCTCCCTGGAATTCCCGTTCTGCGGAACGATGCCTCAGAAGCCTCCAGGGAGAAGG-ACTTGGGAA
i canFam3.chr35            C 0 I 132
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e calJac3.chr4             171449774 1563 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=111046.000000
s hg38.chr6_GL000254v2_alt    204789 24 +   4827813 ataatgttctgcaaatgtccattc
s panTro5.chr6              29192232 24 + 175400573 ataatgttctgcaaatgtccattc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29426258 24 + 173848474 ataatgttctgcaaatgtccattc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5226962 24 +   6154872 ataatgttctgaaaatgtccattc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74229308 24 + 122973662 ataatgttctgaaaatgtccattc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29405552 24 + 172585720 ataatgtcctgaaaatgtccattc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2056246 24 -   2996164 ataatgtcctgaaaatgtccattc
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28363216 24 -  71996105 ataatgtcctgaaaatgtccattc
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378348            274709 24 -    375362 gtaatgtcctgaaaatgtccattc
i saiBol1.JH378348         C 0 I 1559
s cebCap1.NW_016108108v1      272585 24 -    373274 gtaatgtcctgaaaatgtccgttc
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      205635 24 -    285216 gtaatgtcctgaaaatgtccattc
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25938850 132 +  26524999 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e calJac3.chr4             171449774 1563 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=559201.000000
s hg38.chr6_GL000254v2_alt    204813 146 +   4827813 acatttgattgatagtttggctgggttcagaaatctagttgtggaaactattttcctttattgaaatgatttagaaggcattgcctcattgtctttcagcttttggtgttggtgctgctgtggagaaaaaaagatgacattctaat
s panTro5.chr6              29192256 146 + 175400573 acatttgattgatagtttggctgggttcagaaatctagttgtggaaactattttcctttattgaaatgatttagaaggcattgcctcattgtctttcagcttttggtgttggtgctgctgtggagaaaaaaagatgccattctaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29426282 146 + 173848474 acatttgattgatagtttggctgggttcagaaatctagttgtggaaactattttcctttattgaaatgatttagaaggcattgcctcattgtctttcagcttttggtgttggtgctgctgtggagaaaaaaagatgccattctaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5226986 146 +   6154872 acatttgattgatagtttggctgggttcagaaatctagttgtggaaactattttcctttattgaaatgatttagaaggcattgcctcattgtctttcagcttttggtgttggtgttgctgtggagaaaaaaagatgccattctaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74229332 146 + 122973662 acatttgattgatagtttggctgggttcagaaatctagttgtggaaactattttcctttattgaaatgatttagaaggcattgcctcattgtctttcagcttttgatgttggtgttgctgtggagaaaaaaagatgccattctaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29405576 146 + 172585720 acatttgattggtaatttggctgggttcagaaatctagttgtggacactattttcctttattgaaatgatttagaacgcattgcctcattgtctttcagcttttggtgttggtgttgctgtggaggaaaaaagatgtcattctaat
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2056270 146 -   2996164 acatttgattggtaatttggctgggttcagaaatctagttgtggacactattttcctttattgaaatgatttagaacgcattgcctcattgtctttcagcttttggtgttggtgttgctgtggaggaaaaaagatgtcattctaat
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28363240 146 -  71996105 acatttgattggtaatttggctgggttcagaaatctagttgtggacactattttcctttattgaaatgatttagaacgcattgcctcattgtctttcagcttttggtgttggtgttgctgtggaggaaaaaatatgtcattctaat
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016108108v1      272609 146 -    373274 acatttgattgataatttggctgagttcagaaatctagttgtggaaattattttcctttattgataggatttggaaggtactggttcattgtcctttagcttttggtgttggtattgctgtggagaaaaagagatgccattctaat
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      205659 146 -    285216 gaatttgattgataatttggctgggttcagaaatctagttgtgaaaattattttcctttattgataggatttagaaggtattgcttcatcatcttttagcttttggtgttggtgttgctgtggagaaaaagagatgccattctaat
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25938850 132 +  26524999 I
e saiBol1.JH378348            274733 1559 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e calJac3.chr4             171449774 1563 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=785443.000000
s hg38.chr6_GL000254v2_alt    204959 201 +   4827813 tcataatcctttctgtgcaatcttttagttttgttttccttctggaaacatttaggatattcactttattcg------tctgatatttcacaatgacaagctttattgtgggg----ctttgccacaccctatgcagggtagttggtgggcct-tttaaatctggagacttaaggtctttggttctgaaaaataatcttatattacatcttt
s panTro5.chr6              29192402 201 + 175400573 tcataatcctttctgtgcaatcttttagttttgctttccttctggaaacatttaggatcttcactttattcc------tctgatatttcacaatgacaagctttattgtgggg----ctttgccacacactatgcagggtagttggtgggcct-tttaaatctggagacttaaggtctttggttctgaaaaataatcttatattacatcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29426428 201 + 173848474 tcataatcctttctgtgcaatcttttagttttgctttccttctggaaacatttaggatcttcactttattcc------tctgatatttcacaatgacaagctttattgtgggg----ctttgccacacactatgcagggtagttggtgggcct-tttaaatctggagacttaaggtctttggttctgaaaaataatcttatattacatcttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5227132 201 +   6154872 tcataatcctttctgtgcaatcttttagttttgttttccttctggaaacatttaggatcttcactttattcc------tctgatatttcacaatgacaagctttattgtgggg----ctttgccacacactatgcagggtagttggtgggcct-tttaaatctggagacttaaggtctttggttctgaaaaataatcttatattacatcttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74229478 201 + 122973662 tcataatcctttctatgcaatcttttagttttgttttctttctggaaacatttaggatcttcaccttattcc------tctgatatttcacaatgacaagctttattgtgggg----ctttgccacacactatgtagggtagttggtgggcct-tttaaatctggagatttaaggtcttcggttttgaaaaataatcttatattacatcttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29405722 201 + 172585720 tcataatcctttctatgcaatctttttggtttgttttctttctggaaacatttaggatcttcactttattcc------tctgacatttcgcgatgacaagctttcttgtgggg----gtttgccacatgctgtgcagggtagttggtgggcct-tttaaatctggagatttaaggtctttcgttctgaaaaataatcttatattacatcttt
i rheMac8.chr4             C 0 I 1237
s macNem1.NW_012011356v1     2056416 201 -   2996164 tcataatcctttctatgcaatctttttggtttgttttctttctggaaacatttaggatcttcactttattcc------tctgacatttcgcgatgacaagctttcttgtgggg----gtttgccacatgctgtgcagggtagttggtgggcct-tttaaatctggagatttaaggtctttggttctgaaaaataatcttatattacatcttt
i macNem1.NW_012011356v1   C 0 I 1236
s chlSab2.chr17             28363386 201 -  71996105 tcataatcctttctatgcaatctttttggtttgttttctttctggaaatatttaggatcttcactttgttcc------tctgatatttcacgatgacaagctttcttgtgggg----ctttgccacacgctgtgcagggtagttggtgagcct-tttaaatctggagatttaaggtcttcggttctgaaaaataatcttatattacatcttt
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016108108v1      272755 207 -    373274 tcataatcctttctatgcaatcttttccttttgtcttctttctggaaacatttaggatcttcagtttattcctagtgttcagagatttcacgatgacgagctttattgtgggg----ctttgccacacactatgcagggtagttggtgcgctt-tttaaatctggagatttaaggtcttcgtttctgtaaaataatcttatattacaacttt
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      205805 207 -    285216 tcataatcttttctctgcaatcttttccttttgtcttctttctggaaacatttaggatcttcgctttattcctagtgttctgagatttcacgatgacaagctttattgtgggg----ctttgccacacactatgcagggtagttgttgggcct-tttaaatctggagatttaaggtcttcggttctgaaaaataatcttatattatgtcttt
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25938982 203 +  26524999 TCCCAGCCCTTGAGATGCCGCCTTT----cctgtttcctctctggaagcttgcaggatcctcccttcatcccccaggtcctgccctttctcgatg---cgcttcagtgcggggcatccttctccgc-caccgcgc-gggccgtgagtggacccgcgttcacctgcagctgggggggctccggttctgcaaaacgagcctgtgtcgcgtcctg
i canFam3.chr35            I 132 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e saiBol1.JH378348            274733 1559 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e calJac3.chr4             171449774 1563 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macFas5.chr4              29062559 5426 - 170955103 I

a score=391610.000000
s hg38.chr6_GL000254v2_alt    205160 151 +   4827813 atctcctttattccactttctc---ctcttttcctagaatccctgttagtttgttggcatatcttctattatacaccattttattttcttatcaattctttgctattttccatcattcaccccaaactttcc---agatttctacaaccttattttg
s panTro5.chr6              29192603 151 + 175400573 atctcctttattccactttctc---ctcttttcctagaatccctgttagtttgttggcatatcttctattatacaccattttattttcttatcaattctctgctattttccatcattcaccccaaactttcc---agatttctacaaccttattttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29426629 151 + 173848474 atctcctttattccactttctc---ctcttttcctagaatccctgttagtttgttggcatatcttctattatacaccattttattttcttatcaattctctgctattttccatcattcaccccaaactttcc---agatttctacaaccttattttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5227333 151 +   6154872 atctcctttattccactttctc---ctcttttcctagaatccctgttagtttgttggcatatcttctattatacaccattttattttcttatcaattctctgctattttccatcattcaccccaaactttcc---agatttctacaaccttattttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74229679 151 + 122973662 atctcctttattccactttctc---ctcttttcctagaatccctgttagtttgttggcatatcttctattatacacccttttattttcttgtcaattctctgctattttccatcATTCACCCCAAACTTTCC---AGATTTCTACAATCTTGTTTAG
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28363587 153 -  71996105 atct-ctttattccactttctccttctcttttcccagaatccctattaacttgttggcatatcttctattacacacccttctgttttcttatcaattctctgccattttccatcattcaccccaaactttcc---agatttctacaaccttatttta
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016108108v1      272962 154 -    373274 atctcctttattgcactttcctcttctcttttcctagaatccctgttagttttttgtcataccttctattatacacccttttattttcttatcaattatctgctattttccaccatccaccccacactttcc---agatttctacaatcttattttg
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      206012 154 -    285216 atctcctttattccactttcctcttctcttttcctagaatccctgttagtttcttggcatatcttctattatacacccttttattttcttatcaattacctgctattttccaccatccaccccacactttcc---agatttctacaatcttattttg
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25939185 152 +  26524999 ctctcct---tttcatgttctccttgtctcttcctggaaaccccggtgttttgatggcataccttttaccaaatacc-ttttattttcttctggactgtcccctgctttcca-catccaccccacacttggcaggagatggccgcaaccgtatttag
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e saiBol1.JH378348            274733 1559 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e calJac3.chr4             171449774 1563 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macNem1.NW_012011356v1     2056617 1236 -   2996164 I
e macFas5.chr4              29062559 5426 - 170955103 I
e rheMac8.chr4              29405923 1237 + 172585720 I

a score=15288.000000
s hg38.chr6_GL000254v2_alt    205311 6 +   4827813 aaattt
s panTro5.chr6              29192754 6 + 175400573 aaattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29426780 6 + 173848474 aaattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5227484 6 +   6154872 aaattt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74229830 6 + 122973662 AAATTT
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28363740 6 -  71996105 aaattt
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016108108v1      273116 6 -    373274 aaattt
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      206166 6 -    285216 aaattt
i aotNan1.NW_018494050v1   C 0 I 438
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25939337 0 +  26524999 C
e saiBol1.JH378348            274733 1559 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e calJac3.chr4             171449774 1563 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macNem1.NW_012011356v1     2056617 1236 -   2996164 I
e macFas5.chr4              29062559 5426 - 170955103 I
e rheMac8.chr4              29405923 1237 + 172585720 I

a score=3822.000000
s hg38.chr6_GL000254v2_alt    205317 2 +   4827813 ta
s panTro5.chr6              29192760 2 + 175400573 ta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29426786 2 + 173848474 ta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5227490 2 +   6154872 ta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74229836 2 + 122973662 TA
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28363746 2 -  71996105 ta
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016108108v1      273122 2 -    373274 ta
i cebCap1.NW_016108108v1   C 0 I 380
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25939337 0 +  26524999 C
e saiBol1.JH378348            274733 1559 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      206172 438 -    285216 I
e calJac3.chr4             171449774 1563 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macNem1.NW_012011356v1     2056617 1236 -   2996164 I
e macFas5.chr4              29062559 5426 - 170955103 I
e rheMac8.chr4              29405923 1237 + 172585720 I

a score=230255.000000
s hg38.chr6_GL000254v2_alt    205319 175 +   4827813 ggccaggcgcagtggctcacaactgtaatcccagcactttgggaggctgaggcgggcggatcacctgaggttgggagttcgagaccagtcagaccaacatggagaaaccctgtcttaactaaaaacataaaattagccgggcgtggtggcgcatgcctgtaatcccagctactct
s panTro5.chr6              29192762 175 + 175400573 ggccaggtgcagtggctcacaactgtaatcccagcactttgggaggctgaggcgggcggatcacctgaggttgggagttcgagaccaggcagaccaacatggagaaaccctgtcttaactaaaaacataaaattagccgggcgtggtggcgcatgcctgtaatcccagctactct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29426788 175 + 173848474 ggccaggtgcagtggctcacaactgtaatcccagcactttgggaggctgaggcgggcggatcacctgaggttgggagttcgagaccagtcagaccaacatggagaaaccctgtcttaactaaaaacataaaattagccgggcgtggtggcgcatgcctgtaatcccagctactct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5227492 175 +   6154872 ggccaggcgcagtggctcacaactgtaatcccagcactttgggaggctgaggcgggcggatcacctgaggtttggagttcgagaccagtcagaccaacatggagaaaccctgtcttaactaaaaacataaaattagccgggcgtggtggcgcatacctgtaatcccagctactct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74229838 175 + 122973662 ggccaggtgcagtggctcacaactgtaatcccagcactttgggaaggtgaggcaggtggatcacctgaggttgggagttcgagaccagtctggccaacacggagaaaccctgtcttaactaaaaacataaaattagccgggcgtggtggcgcatgcctgtaatcccagctactct
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28363748 175 -  71996105 ggccgggcgcagtggctcacgactgtaattccagcactttgggaggccgaggcgggcggatcacttgaggtcaggagttcgagaccagcctgaccaaaatggagaaatcccttcttaactaaaaacataaaactagccgggcttggtggcgcatgcctgtaatcccaggtactcc
i chlSab2.chr17            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25939337   0 +  26524999 C
e saiBol1.JH378348            274733 1559 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      206172 438 -    285216 I
e cebCap1.NW_016108108v1      273124 380 -    373274 I
e calJac3.chr4             171449774 1563 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macNem1.NW_012011356v1     2056617 1236 -   2996164 I
e macFas5.chr4              29062559 5426 - 170955103 I
e rheMac8.chr4              29405923 1237 + 172585720 I

a score=26005.000000
s hg38.chr6_GL000254v2_alt    205494 18 +   4827813 ggaggcagaagaatctct
s panTro5.chr6              29192937 18 + 175400573 ggaggcagaagaatctct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29426963 18 + 173848474 ggaggcagaagaatctct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5227667 18 +   6154872 ggaggcagaagaatctct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74230013 18 + 122973662 ggaggcagaagaatcgct
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28363923 18 -  71996105 ggaggcgggagaaccggt
i chlSab2.chr17            C 0 C 0
s canFam3.chr35             25939337 18 +  26524999 ggagtcttaaaaatctct
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e saiBol1.JH378348            274733 1559 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      206172 438 -    285216 I
e cebCap1.NW_016108108v1      273124 380 -    373274 I
e calJac3.chr4             171449774 1563 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macNem1.NW_012011356v1     2056617 1236 -   2996164 I
e macFas5.chr4              29062559 5426 - 170955103 I
e rheMac8.chr4              29405923 1237 + 172585720 I

a score=137812.000000
s hg38.chr6_GL000254v2_alt    205512 116 +   4827813 tgaacctggaaggcagaggttgtggtgagccgagattgcatcattgcactccagcctgggcaacaagcgccaaaccccgtctcaag----aaaaaaaaaaaagaaatttttaaaaatcca
s panTro5.chr6              29192955 117 + 175400573 tgaacctggaaggcagaggttgtggtgagccgagattgcatcattgcactccagcctgggcaacaagcgccaaaccccgtctcaag---aaaaaaaaaaaaagaaattttaaaaaatcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29426981 115 + 173848474 tgaacctggaaggcagaggttgtggtgagccgagattgcatcattgcactccagcctgggcaacaagcgccaaaccctgtctcaag-----aaaaaaaaaaagaaattttaaaaaatcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5227685 117 +   6154872 tgaacctggaaggcagaggttgtggtgagccgagattgcgtcattgcactccagcctgggcaacaagcgccaaaccccgtctcaag---aaaaaaaaaaaaagaattttttaaaaatcca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74230031 120 + 122973662 tgaacctggaaggcggaggttacggtgagctgagattgtgccattgcactccagcctgggcaataagagccaaatcccgtctcaaggaaaaaaaaaaaaaaagaaaTTTTTAAAAATCCG
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28363941 119 -  71996105 tgaacctgggaggcggaggttgctgtgagccgagattgcgccactgcactccagtctgggcagtaagagccaaactccgtctcaag-aataaaaaaaaaagaaaattttttaaaactcca
i chlSab2.chr17            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25939355   0 +  26524999 C
e saiBol1.JH378348            274733 1559 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      206172 438 -    285216 I
e cebCap1.NW_016108108v1      273124 380 -    373274 I
e calJac3.chr4             171449774 1563 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macNem1.NW_012011356v1     2056617 1236 -   2996164 I
e macFas5.chr4              29062559 5426 - 170955103 I
e rheMac8.chr4              29405923 1237 + 172585720 I

a score=123914.000000
s hg38.chr6_GL000254v2_alt    205628 83 +   4827813 gccatcataatattattaataattttaagaact--cccct--cctttttgtttcatgagtgca--gtatcttctcttactttcccgagg
s panTro5.chr6              29193072 83 + 175400573 gccatcataatattattaataattttaagaact--cccct--cctttttgtttcatgagtgca--gtatcttctcttactttcccgagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29427096 83 + 173848474 gccatcataatattattaataattttaagaact--cccct--cctttttgtttcatgagtgca--gtatcttctcttactttcccgagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5227802 83 +   6154872 gccatcataatattattaataattttacgaact--cccct--cctttttgtttcatgagtgca--gtatcttctcttactttcccgagg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74230151 83 + 122973662 GCCACCATAATATTATTAATAATTTTGAGAGCT--CCcat--cctttttgtttcatgagtgca--gtatcttctcctactttcccgagg
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28364060 87 -  71996105 gccattatgatattattaataatattaagagctcccccct--cctttttgtttcatgagtgcagcgtatcttctcttactttcccaagg
i chlSab2.chr17            C 0 C 0
s canFam3.chr35             25939355 79 +  26524999 gccaccataatat------taattttaagactt--ccccttctcttcttgtgtcgcgaacacc--ctatctcctcttacctcactgagg
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e saiBol1.JH378348            274733 1559 -    375362 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      206172 438 -    285216 I
e cebCap1.NW_016108108v1      273124 380 -    373274 I
e calJac3.chr4             171449774 1563 - 171630274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macNem1.NW_012011356v1     2056617 1236 -   2996164 I
e macFas5.chr4              29062559 5426 - 170955103 I
e rheMac8.chr4              29405923 1237 + 172585720 I

a score=28364.000000
s hg38.chr6_GL000254v2_alt    205711 11 +   4827813 -attaattataa
s panTro5.chr6              29193155 11 + 175400573 -attaattataa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29427179 11 + 173848474 -attaattataa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5227885 11 +   6154872 -attaattataa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74230234 11 + 122973662 -attaattgtaa
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28364147 11 -  71996105 -attaattgtaa
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             171451337 11 - 171630274 -attaattacaa
i calJac3.chr4             I 1563 C 0
s saiBol1.JH378348            276292 11 -    375362 -attaattacaa
i saiBol1.JH378348         I 1559 I 4
s canFam3.chr35             25939434 12 +  26524999 acttgattctaa
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e aotNan1.NW_018494050v1      206172 438 -    285216 I
e cebCap1.NW_016108108v1      273124 380 -    373274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macNem1.NW_012011356v1     2056617 1236 -   2996164 I
e macFas5.chr4              29062559 5426 - 170955103 I
e rheMac8.chr4              29405923 1237 + 172585720 I

a score=17190.000000
s hg38.chr6_GL000254v2_alt    205722 5 +   4827813 ttttt
s panTro5.chr6              29193166 5 + 175400573 ttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29427190 5 + 173848474 ttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5227896 5 +   6154872 ttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74230245 5 + 122973662 tcttt
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28364158 5 -  71996105 ttttt
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             171451348 5 - 171630274 ttttt
i calJac3.chr4             C 0 I 2
s saiBol1.JH378348            276307 5 -    375362 ttttt
i saiBol1.JH378348         I 4 I 2
s aotNan1.NW_018494050v1      206610 4 -    285216 -tttt
i aotNan1.NW_018494050v1   I 438 I 1
s canFam3.chr35             25939446 5 +  26524999 ttttc
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e cebCap1.NW_016108108v1      273124 380 -    373274 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macNem1.NW_012011356v1     2056617 1236 -   2996164 I
e macFas5.chr4              29062559 5426 - 170955103 I
e rheMac8.chr4              29405923 1237 + 172585720 I

a score=-2431.000000
s hg38.chr6_GL000254v2_alt    205727 1 +   4827813 -a
s panTro5.chr6              29193171 1 + 175400573 -a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29427195 1 + 173848474 -a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5227901 1 +   6154872 -a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74230250 1 + 122973662 -a
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28364163 1 -  71996105 -t
i chlSab2.chr17            C 0 I 320
s calJac3.chr4             171451355 1 - 171630274 -a
i calJac3.chr4             I 2 C 0
s saiBol1.JH378348            276314 1 -    375362 -a
i saiBol1.JH378348         I 2 C 0
s cebCap1.NW_016108108v1      273504 1 -    373274 -a
i cebCap1.NW_016108108v1   I 380 C 0
s aotNan1.NW_018494050v1      206615 1 -    285216 -a
i aotNan1.NW_018494050v1   I 1 C 0
s canFam3.chr35             25939451 1 +  26524999 t-
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e colAng1.NW_012115566v1     1923947 644 -   3067355 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I
e cerAty1.NW_012001495v1     1919965 649 -   2157725 I
e macNem1.NW_012011356v1     2056617 1236 -   2996164 I
e macFas5.chr4              29062559 5426 - 170955103 I
e rheMac8.chr4              29405923 1237 + 172585720 I

a score=101660.000000
s hg38.chr6_GL000254v2_alt    205728 11 +   4827813 aaaaatccaac
s panTro5.chr6              29193172 11 + 175400573 aaaaatccaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29427196 11 + 173848474 aaaaatccaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5227902 11 +   6154872 aaaaatccaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74230251 11 + 122973662 aaaaatccagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29407160 11 + 172585720 aaaaatccagg
i rheMac8.chr4             I 1237 C 0
s macFas5.chr4              29067985 11 - 170955103 aaaaatccagg
i macFas5.chr4             I 5426 C 0
s macNem1.NW_012011356v1     2057853 11 -   2996164 aaaaatccagg
i macNem1.NW_012011356v1   I 1236 C 0
s cerAty1.NW_012001495v1     1920614 11 -   2157725 aaaaatccagg
i cerAty1.NW_012001495v1   I 649 C 0
s chlSab2.chr17             28364484 11 -  71996105 aaaaatccagg
i chlSab2.chr17            I 320 C 0
s colAng1.NW_012115566v1     1924591 11 -   3067355 aaaaatccagg
i colAng1.NW_012115566v1   I 644 C 0
s calJac3.chr4             171451356 11 - 171630274 aaaaatccagg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            276315 11 -    375362 aagagtccagg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      273505 11 -    373274 aaaaatccagg
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      206616 11 -    285216 aaaaatccagg
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25939452 11 +  26524999 aaaaatccagt
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I
e manLeu1.NW_012104165v1     2046171 767 +   2316924 I

a score=1602502.000000
s hg38.chr6_GL000254v2_alt    205739 161 +   4827813 ttcctgcattgtatttgtttcctcttaggttcttcctgcccccttctgtttgtattcgtccttgtcttattgtagaaatattttcacaaccacctgattatccttggttgtcgtacatattttaagtaaggcactaaacacctgattctggaagctctgtg
s panTro5.chr6              29193183 161 + 175400573 ttcctgcattgtatttgtttcctcttaggttcttcctgcccccttctgtttgtattcgtccttgtcttattgtagaaatattttcacaaccacctgattatccttggttgtcgtacatattttaagtaaggcactaaacacctgattctggaagctctgtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29427207 161 + 173848474 ttcctgcattgtatttgtttcctcttaggttcttcctgcccccttctgtttgtattcgtccttgtcttattgtagaaatattttcacaaccacctgattatccttggttgtcgtacatattttaagtaaggcactaaacacctgattctggaagctctgtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5227913 161 +   6154872 ttcctgcattgtatttgtttcctcttaggttcttcctgcccccttctgtttgtattcgtccttgtcttattgtagaaatattttcacaaccacctgattatccttagttgtcgtacatattttaagtaaggcactaaacacctgattctggaagctctgtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74230262 161 + 122973662 ttcctgcattgtatttgtttcctcttaggttcttcctgcccccttctgtttctattcgtccttgtcttattgtagaaatattttcacaaccacctgattatccttggttgtcgtacatattttaagtaaggcactaagcacctgattctggaagctctgtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29407171 161 + 172585720 ttcctccactgtatttgtttcctcttaggttcttcctgcccccttctgttggtaatcatccttgtcttattgtagaaatgttttcacaaccatctgattatccttggttgtcgtacatattttaagtaaggcagaaaacacctgattctggaagctctgtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29067996 161 - 170955103 ttcctccactgtatttgtttcctcttaggttcttcctgcccccttctgttggtattcatccttgtcttattgtagaaatgttttcacaaccatctgattatccttggttgtcgtacatattttaagtaaggcacaaaacacctgattctggaagctctgtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2057864 161 -   2996164 ttcctccactgtatttgtttcctcttaggttcttcctgcccccttctgttggtattcatccttgtcttattgtagaaatgttttcacaaccatctgattatccttggttgtcgtacatattttaagtaaggcacaaaacacctgattctggaagctctgtg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1920625 161 -   2157725 ttcctccactgtatttgtttcctcttaggtttttcctgcccccttctgttggtattcatccttgtcttattgtagaaatgttttcacaaccatctgattatccttggttgtcgtacatattttaagtaaggcacaaaacacctgattctggaagctctgtg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28364495 161 -  71996105 ttcctccactgtatttgtttcctcttaggttcttcctgcccccttctgttggtattcatccttgtcttattgtagaaatgttttcacaaccatctgattatccttggttgtcatacatattttaagtaaggcacaaaacacctgattctggaagctctgtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2046938 161 +   2316924 TTCCTCCACTGTAtttgtttcctcttaggtttttcctgcccccttctgttggtattcatccttgtcttattgtagaaatgttttcacaaccatctgattatccttggttgtcgtacatattttaagtaaggcacaaaacacctgattctggaagctctgtg
i manLeu1.NW_012104165v1   I 767 C 0
s colAng1.NW_012115566v1     1924602 161 -   3067355 ttcctccactgtatttgtttcctcttaggttcttcctgcccccttctgttggtattcatccttgtcttattgtagaaatgttttcacaaccatctgattatccttggttgtcgtacgtattttaagtaaggcacaaaacacccgattctggaagctctgtg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171451367 154 - 171630274 ttcctgctttg--tgtgtttcctcttagg-tcttcctgcccccacctgtgtgtatttgttcttgtcctactgtagaaatattttcacaaccatctgatcatccttggttgtcttgcatattttgagt----aactgaacccttgaccctggaagctctgtg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            276326 160 -    375362 ttcctgctttgtatatgtttcctcttagg-tcctcctgcccccatctgtgtgtattcgttcttgtcctgctgtagaaatattttcacaaccatctgatcatccttggttgtcgtgaatattttaagtgaggaactgaacacctgactctggaagatttgtg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      273516 159 -    373274 ttcctgctttgtatgtgtttcctcttagg-tcctcctg-ccccatctgtgtgtattcgtccttgtcctactgtagaaatattttcacaaccatctgatcatccttggttgttgtgcatattttaagtgaggaactgaacgcctgactctggaagctctgtg
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      206627 160 -    285216 ttcctgctttgtatgtgtttcctgttagg-tcttcctgcccccatctgtgtgtattcatccttgtcctaccgtagaaatattttcacaaccatctgatcatccttggttgtcgtgcatattttaagtgagtaactgaacccctgactctggaagctctgtg
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25939463 153 +  26524999 ttcccgc-ttgggtttgtttcgctttagc-tcttctt-ccacctcctgttagttttcgtctttatcctg-----gaaatattttcacaaacctccaacgatttttgtgtgtcgtccctgcttgaaacaaggacCCGCAGACCGGCCCGTGGGAGGTGTGCG
i canFam3.chr35            C 0 I 200
e dasNov3.JH561790             80168 9105 -    302817 I
e otoGar3.GL873742           1569794 563 -   2232465 I

a score=1340100.000000
s hg38.chr6_GL000254v2_alt    205900 141 +   4827813 gacctgctccaagcctgtagactgCAGAGTCTTTGGGGATTCTATGGAGACCCAGCCATTTCTTTGGGAGATCCTCAAATACCAGTGTTTGTCGTTGTTTTAA-TTTTTATTTTTTCCTTGTAAATTGACTTGGATATCTCA
s panTro5.chr6              29193344 141 + 175400573 gacctgctccaagcctgtagactgcagagtctttggggattctatggagacccagccatttctttgggagaccctcaaataccagtgtttGTCGTTGTTTTAA-TTTTTATTTTTTCCTTGTAAATTGACTTGGATATCTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29427368 141 + 173848474 gacctgctccaagcctgtagactgcagagtctttggggattctatggagacccagccatttctttgggagaccctcaaataccagtgtttGTCGTTGTTTTAA-TTTTTATTTTTTCCTTGTAAATTGACTTGGATATCTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5228074 141 +   6154872 gacctgctccaagcctgtagactgcagagtctttggggattctatggagacccagccatttctttgggagaccctcaaataccagtgtttGTCGTTGTTTTAA-TTTTTATTTTTTCCTTGTAAATTGACTTGGATATCTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74230423 141 + 122973662 gacctggtccaagcctgtagactgcagagtctttggggattctatggagactcagccatttctttgggagaccctcaaataccagtgtttATCGTTGTTTTAA-TTTTTATTTTTTCCTTGTAAATTGACTTGGATATCTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29407332 141 + 172585720 gacctgggccaagcctgtagactgGAGAGTCTTTGGGGATTCTATGGAGACCCAGCCATTTCTTTGGGAGACCCTGAAATACCAGTGTTTGTCGTTGGTTTAA-TTTTTATTTTTTCCTCGTAAACTGACTTGGATATCTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29068157 141 - 170955103 gacctgggccaagcctgtagactgGAGAGTCTTTGGGGATTCTATGGAGACCCAGCCATTTCTTTGGGAGACCCTGAAATACCAGTGTTTGTCGTTGGTTTAA-TTTTTATTTTTTCCTCGTAAACTGACTTGGATATCTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2058025 142 -   2996164 gacctgggccaagcctgtagactgGAGAGTCTTTGGGGATTCTATGGAGACCCAGCCATTTCTTTGGGAGACCCTGAAATACCAGTGTTTGTCGTTGGTTTAATTTTTTTTTTTTTCCTCGTAAACTGACTTGGATATCTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1920786 141 -   2157725 gagctgggccaagcctgtagactgGAGAGTCTTTGGGGATTCTATGGAGACCCAGCCATTTCTTTGGGAGACCCTGAAATACCAGTGTTTGTCGTTGGTTTAA-TTTTTATTTTTTCCTCGTAAACTGACTTGGATATCTCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28364656 141 -  71996105 gacctgggccaagcctgtagactggagtgtctttggggattctatggagacccagccatttctttgggagaccctgaaataccagtgtttGTCGTTGGTTTAA-TTTTTATTTTTTCCTCGTAAACTGACTTGGATATCTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2047099 141 +   2316924 gagctgggccaagcctgtagactgGAGAGTCTTTGGGGATTCTATGGAGACCCAGCCATTTCTTTGGGAGACCCTGAAATACCAGTGTTTGTCGTTGGTTTAA-TTTTTATTTTTTCCTCGTAAACTGACTTGGATATGTCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1924763 141 -   3067355 gacctgggccaagcctgtagactAGAGAGTCTTTGGGAATTCTATGGAGACCCAGCCATTTCTTTGGGAGACCCTGAAATACCAGTGTTTGTCGTTGATTTAA-TTTTTATTTTTTCCTCGTAAACTGACGTGGATATCTCG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171451521 140 - 171630274 ggcctgggccagg-ctgtggactgcagagtctatgaagattctctggagactcagccatttctttggaagaccctcaaatatcagtgtATGTCGTTGTTTTAA-TTTTTATTTTTTCCTTGTAAATTCACATGAATATCTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            276486 140 -    375362 ggtcggggccagg-ctgtggactgcagagtctttgaggattctgtggacactcggccatttcattggaagaccctcaaataccagtgtATGTCGTTGTTTTAA-TTTTTATTTTTTCCTTGTAAATTCACATGAATATCTCA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      273675 138 -    373274 ggcctgggccagg-ctgtggactgcagagtc--tgaggattctatggagactcggccatttctttggaagaccctcaaataccagtgtATGTTGTTGTTTTAA-TTTTTATTTTTTCCTTGTAAATTCACATGAATATCCCA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      206787 140 -    285216 ggcctgggccagg-ctgtggactgcagagtctttgaggattctatggagactcggccatttctttgcaagacccccaaataccagtgtGCGTCGTTGTTTTAA-TTTTTATTTTTTCCTTGTAAATTCACATGAATATCTCA
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             80168 9105 -    302817 I
e canFam3.chr35             25939616 200 +  26524999 I
e otoGar3.GL873742           1569794 563 -   2232465 I

a score=1416849.000000
s hg38.chr6_GL000254v2_alt    206041 157 +   4827813 TCTGTCTTTCTTTATCTCTGGAAAACTTTATCCCAGTTTCCCTTGACATACTCCTTCAACCTCCTGGGAGAGGTAGGGGGAGGGGAGATGAGCCTGTTTGACTAGTTCTGGGAATGTGGTGAGGGAAGAGATCTGGGGATTTCGGCTCTGTGCTGAC
s panTro5.chr6              29193485 157 + 175400573 TCTGTCTTTCTTTATCTCTGGAAAACTTTATCCCGGTTTCCCTTGACATACTCCTTCAACCTCCTGGGAGAGGTAGGGGGAGGGGAGATGAGCCTGTTTGACTAGTTCTGGGAATGTGGTGAGGGAAGAGATCTGGGGATTTCGGCTCTGTGCTGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29427509 157 + 173848474 TCTGTCTTTCTTTATCTCTGGAAAACTTTATCCCAGTTTCCCTTGACATACTCCTTCAACCTCCTGGGAGAGGTAGGGGGAGGGGAGATGAGCCTGTTTGACTAGTTCTGGGAATGTGGTGAGGGAAGAGATCTGGGGATTTCGGCTCTGTGCTGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5228215 157 +   6154872 TTTGTCTTTCTTTATCTCTGGAAAACTTTATCCCAGTTTCCCTTGACATACTCCTTCAACCTCCTGGGACAGGTAGGGGGAGGGAAGATGAGCCTGTTTGACTAGTTCTGGGAATGTGGTGAGGGAAGAGATCTGGGGATTTCGGCTCTGTGCTGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74230564 157 + 122973662 TCTGTCTTTCTTTATCTCTGGAAAACTTTATCCCAGTTTCCCTTGACATACTCCTTCAACCTCCTGGGAGAGGTAGGGGGAGGGGAGATGAGCCTGTTTGACAAGTTCTGGGAATGTGATGAGGGAAGAGATCTGGGGATTTCGGTTCTGTGCTGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29407473 157 + 172585720 TCTGTCTTTCTTTATGTCTGGAAAACTTTATCTCAGTTTCCCTTGACATACTCCTTCAACCTCCTGGGAGAGGTAGTGGGAGGGGAGATGAGCCTGTTTGACTAGTTCTGGGAATGTGGTGAGGGAAGAGATCTGGGGATTTCGGCTCTGTGCTGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29068298 157 - 170955103 TCTGTCTTTCTTTATGTCTGGAAAACTTTATCTCAGTTTCCCTTGACATACTCCTTCAACCTCCTGGGAGAGGTAGTGGGAGGGGAGATGAGCCTGTTTGACTAGTTCTGGGAATGTGGTGAGGGAAGAGATCTGGGGATTTCGGCTCTGTGCTGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2058167 157 -   2996164 TCTGTCTTTCTTTATGTCTGGAAAACTTTATCTCAGTTTCCCTTGACATACTCCTTCAACCTCCTGGGAGAGGTAGTGGGAGGGGAGATGAGCCTGTTTGACTAGTTCTGGGAATGTGGTGAGGGAAGAGATCTGGGGATTTCGGCTCTGTGCTGAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1920927 157 -   2157725 TCTGTCTTTCTTTATGTCTGGAAAACTTTATCTCAGTTTCCCTTGACACACTCCTTCAACCTCCTGGGAGAGGTAGTGGGAGGGGAGATGAGCCTGTTTGACTAGTTCTGGGAATGTGGTGAGGGAAGAGATCTGGGGATTTCGGCTCTGTGCTGAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28364797 157 -  71996105 TCTGTCTTTCTTTATGTCTGGAAAACTTTATCTCAGTTTCCCTTGACATACTCCTTCAACCTCCTGGGAGAGGTAGTGGGAGGGGAGATGAGCCTGTTTGACTAGTTCTGGGAATGTGGTGAGGGAAGAGATCTGGGGATTTCGGCTCTGTGCTGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2047240 157 +   2316924 TCTGTCTTTCTTTATGTCTGGAAAACTTTATCTCAGTTTCCCTTGACACATTCCTTCAACCTCCTGGGAGAGTTAGTGGGAGGGGAGATGAGCCTGTTTGACTAGTTCTGGGAATGTGGTGAGGGAAGAGATCTGGGGATTTCGGCTCTGTGCTGAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1924904 154 -   3067355 TCTGTCTTTCTTTATGTCTGGAAAACTTTATCTCAGTTTCCCTTGACATACTC---CAACCTCCTGGGAGAGGTAGTGGGCGGGGAGATGAGCCTGTTTGACTACTTCTGGGAATGTGGTGAGGGAAGAGATCTGGGGATTTCGTCTCTGTGCTGAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171451661 152 - 171630274 TCTGTCTGTCTTTATCTCTAGGAAGCTTTATCCCAGTTTCCCTCGGGATACTGGGACATCCTCCCGGGAGAGGCGTGGGGAGGGGAGATGAGCCTGTTT----AGTTCTGGGGAAGTGGGGAGGGAAGAGAT-GGGAGATTTCGGCTGTGTGCTGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            276626 131 -    375362 ----TCTGTCTTTACTTCTAGGAAGCTTTATTCCAGTTTCCCTCGACAGACACCTTCACCGTCCTGGGAGAGGCGTGCGGAGGGGAGATGAGCCAGTTT----AGTTCTGGGGATGTGGGGAGGGAAGAGAT-GGGA-----------------GAC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      273813 148 -    373274 ----TGTGTCTTTACCTCTAGGACGCTTTATCCCAGTTTCCCTCGACAGACGCCTTCACCGTCCTGGGAGAGGCGTGGGGAGGGGAGATGAGTCTGTTT----CGTTCTGGGGATGTGGGGAGGGAAGAGAT-GGCAGATTTCGGCTGTGGGCCGAC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      206927 152 -    285216 TCTGTTTGTCTTTATCTCTAGGAAGCTTTATCCCAGTTTCCCTCGACAGACACCTTCATCGTCCTGGGAGAGGCGTGGGGAGGGGAGATGAGCCTGTTT----AGTTCTGGGGATGTGGGGAGGGAAGAGAA-GGGGGATGTCGGCTGTGTGCTGAC
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             89273 114 -    302817 TCTGTGGTTCCTTACTTCTGG-----------CCAGTTTCCTCCTCCA---TCCCTTCACCTCTAGCCAGAGCCCAGTGGAGGGACGACG-GCCTGTTTGCTGCATTCTAGGGGT--------------------------TCAACTTTGTGC--AC
i dasNov3.JH561790         I 9105 C 0
e canFam3.chr35             25939616 200 +  26524999 I
e otoGar3.GL873742           1569794 563 -   2232465 I

a score=244575.000000
s hg38.chr6_GL000254v2_alt    206198 26 +   4827813 ACTTCCTTCATGCTACTCTGGTTTAG
s panTro5.chr6              29193642 26 + 175400573 ACTTCCTTCATGCTACTCTGGTTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29427666 26 + 173848474 GCTTCCTTCATGCTACTCTGGTTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5228372 26 +   6154872 ACTTCCTTCATGCTACTCTGGTTTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74230721 26 + 122973662 ATTTCCTTCATGCTACTCTGGTTTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29407630 26 + 172585720 ATTTCCTTCATGCTAATCTGGTTTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29068455 26 - 170955103 ATTTCCTTCATGCTAATCTGGTTTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2058324 26 -   2996164 ATTTCCTTCATGCTAATCTGGTTTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1921084 26 -   2157725 ATTTCCTTCATGCTAATCTGGTTTTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28364954 26 -  71996105 ATTTCCTTCATGCTAATCTGGTTTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2047397 26 +   2316924 ATTTCCTTCATGCTAATCTGGTTTTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1925058 26 -   3067355 ATTTCCTTCATGCTAATCTGGTTTTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171451813 26 - 171630274 GTTTCCTGCACGCTGCTCGGGTTTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            276757 16 -    375362 GTTTCCTTCACGCTGC----------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      273961 26 -    373274 ATTTCCTTCACGCTGCTCGGGTTTTG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      207079 26 -    285216 ATTTCCTTCACGCTGCTCGGGTTTTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1570357 26 -   2232465 attTCCTTCCTGCCACTCTAGTTTTC
i otoGar3.GL873742         I 563 C 0
s dasNov3.JH561790             89387 21 -    302817 GTATCTTCCA-----CTCCAGCTTTC
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25939616 200 +  26524999 I

a score=284707.000000
s hg38.chr6_GL000254v2_alt    206224 30 +   4827813 CACCCCTGCACTTCACCCTCTTTCAACTCC
s panTro5.chr6              29193668 30 + 175400573 CACCCCTGCACTTCACCCTCTTTCAACTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29427692 30 + 173848474 CACCCCTGCACTTCACCCTCTTTCAACTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5228398 30 +   6154872 CACCCCTGCACTTCACCCTCTTTCAACTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74230747 30 + 122973662 CACCCCTGCACTTCACCCTCTTTCAACTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29407656 30 + 172585720 CACCCCTGCACTTCACCCTCTTTCAACTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29068481 30 - 170955103 CACCCCTGCACTTCACCCTCTTTCAACTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2058350 30 -   2996164 CACCCCTGCACTTCACCCTCTTTCAACTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1921110 30 -   2157725 CACCCCTGCAGTTCACCCTTTTTCAACTCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28364980 30 -  71996105 CACCCCTGCAGTTCACCCTCTTTCAACTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2047423 30 +   2316924 CACCCCTGCAGTTCACCCTTTTTCAACTCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1925084 30 -   3067355 CACCCCTGCACTTCACCCTCTTTCAACTCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171451839 27 - 171630274 ---CCCCGCACTTCGCCTTCTTTCAACGCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            276773 18 -    375362 ------------TCACCCCATTTGCACTCC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      273987 27 -    373274 ---CCCCACACTTCACCCTCTTTCAGTTCC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      207105 26 -    285216 ----CCCGCACTTCGCCTTCTTTCAACTCC
i aotNan1.NW_018494050v1   C 0 I 151
s otoGar3.GL873742           1570383 30 -   2232465 CACTTCCACACTTCTCCCTCTTTCACGTTC
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25939816  9 +  26524999 CACCCCCGC---------------------
i canFam3.chr35            I 200 C 0
s dasNov3.JH561790             89408 30 -    302817 CATCCTGGCTTCTCTTTCTCTTGGAAGCCC
i dasNov3.JH561790         C 0 C 0

a score=12376.000000
s hg38.chr6_GL000254v2_alt    206254 1 +   4827813 T
s panTro5.chr6              29193698 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29427722 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5228428 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74230777 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29407686 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29068511 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2058380 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1921140 1 -   2157725 T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28365010 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2047453 1 +   2316924 T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1925114 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171451866 1 - 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            276791 1 -    375362 T
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      274014 1 -    373274 T
i cebCap1.NW_016108108v1   C 0 I 69
s otoGar3.GL873742           1570413 1 -   2232465 T
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             89438 1 -    302817 T
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25939825 0 +  26524999 C
e aotNan1.NW_018494050v1      207131 151 -    285216 I

a score=377443.000000
s hg38.chr6_GL000254v2_alt    206255 75 +   4827813 GACCAAGTCAACTCCT----------GTTACTCACATCGACAGTCATTTTTCATGTTCAAGACCC---CTGAACCGCTCTCAT-CCCCC
s panTro5.chr6              29193699 75 + 175400573 GACCAAGTCAACTCCT----------GTTACTCACATCGACAGTCATTTTTCATGTTCAAGACCC---CTGAACCGCTCTCAT-CCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29427723 75 + 173848474 GACCAAGTCAACTCCT----------GTTACTCACATCGACAGTCATTTTTCATGTTCAAGACCC---CTGAACCGCTCTCAT-CCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5228429 75 +   6154872 GACCAAGTCAACTCCT----------GTTACTCACATCGACAGTCGTTTTTCATGTTCAAGACCC---CTGAACCGCTCTCAT-CCCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74230778 75 + 122973662 GACCAAGTCAACTCCT----------GTTACTCACATCGACAGTCATTTTTCATGTTCAAGACCC---CTGAACCGCTCTCAT-CCCGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29407687 67 + 172585720 GACCAAGTTAACTCTC----------GTTACTCACATCGGCAGTCATTCTTCATGTTCAAGACCC-----------CATTCAT-CCCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29068512 67 - 170955103 GACCAAGTTAACTCTC----------GTTACTCACATCGGCAGTCATTCTTCATGTTCAAGACCC-----------CATTCAT-CCCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2058381 67 -   2996164 GACCAAGTTAACTCTC----------GTTACTCACATCGGCAGTCATTCTTCATGTTCAAGACCC-----------CATTCAT-CCCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1921141 67 -   2157725 GACGAAGTTAACTCTC----------GTTACTCACATCGACAGTCATTCTTCATGTTCAAGACCC-----------CATTCAT-CCCCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28365011 67 -  71996105 GACCGAGTTAACTCTC----------GTTACTCACATCGACAGTCATTCTTCATGTTCAAAACCC-----------CATTCAT-CCCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2047454 67 +   2316924 GACCAAGTTAACTCTC----------GTTACTCACATCGACAGTTATTCTTCATGTTCAAGACCC-----------CATTCAT-CCCCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1925115 63 -   3067355 GAC-----TAACTCTC----------GTTACTCACATCAACAGTCATTCTTCATGTTCAAGACTC-----------CATTCATCCCCCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171451867 68 - 171630274 ----AAGTCAACTTCC----------GTGACTCAC--CCGCAGCCGTTCATCATGTTCAGGGTCC---CTGAGCG-CACCACC-CGCTC
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            276792 68 -    375362 ----AAGTCAGCTCCC----------GCGGTTCGC--CCGCAGCCGTTCTTCGTGTTCGGGGTCC---CTGAGCG-CACTCCC-CCCTC
i saiBol1.JH378348         C 0 I 1
s otoGar3.GL873742           1570414 86 -   2232465 GACCACGTCAACTACTGATCAGAATAGCTACTCACAGCCACAGCTAGAGTTCATGCTGGTGGCCCC--CTGAACCCCACTCGT-CCTAT
i otoGar3.GL873742         C 0 I 10
s canFam3.chr35             25939825 30 +  26524999 ---------------C----------GCCACCTGC------------------TGCTTTGGGCCG-----------CGCGCCT-T----
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             89439 73 -    302817 GACCTGACCAACTCCT----------GCAACTTGCCTCAACAGACAGGCCCGGGGCCCTGGACTCCCACTGG----CCTTGGC-CCTC-
i dasNov3.JH561790         C 0 C 0
e aotNan1.NW_018494050v1      207131 151 -    285216 I
e cebCap1.NW_016108108v1      274015 69 -    373274 I

a score=810724.000000
s hg38.chr6_GL000254v2_alt    206330 104 +   4827813 ---ACTCTCCGCTAACTCTCCTGC-TTCGCTTCAGGTCTACATTGCCTCGCTCA-TTTCTTCCCTGCTGAGCTCT-----------TTGATT-----AGTTTGCTAAGCAGCATCTCGGGAACAG
s panTro5.chr6              29193774 104 + 175400573 ---ACTCTCCGCTAACTCTCCTGC-TTCGCTTCAGGTCTACATTGCCTCGCTCA-TTTCTTCCCTGCTGAGCTCT-----------TTGATT-----AGTTTGCTAAGCAGCATCTCGGGAACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29427798 104 + 173848474 ---ACTCTCCGCTAACTCTCCTGC-TTCGCTTCAGGTCTACATTGCCTCGCTCA-TTTCTTCCCTGCTGAGCTCT-----------TTGATT-----AGTTTGCTAAGCAGCATCTCGGGAACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5228504 104 +   6154872 ---ACTCTCCGCTAACTCTCCTGC-TTCGCTTCAGGTCTACATTGGCTCGCTCA-TTTCTTCCCTGCTGAGCTCT-----------TTGATT-----AGTTTGCTAAGCAGCATCTCGGGAACAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74230853 104 + 122973662 ---ACTCTCCACTAACTCTCCTGC-TTCGCGTCAGGTCTACATTGGCTCGCTCA-TTTCTTCCCTGCTGAGCTCT-----------TTGATT-----AGTTTGCTAAGCAGTATCTCGGGAACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29407754 100 + 172585720 ---AGTCTCCACTAACTCTCCTGC-TTCACTTCCGGTCTGCATTGGCTTGCTCA-TTTCTTCCCTGCTGAGCTCT-----------TTG---------GCTTGCTAAGCAGCATCTCCGGAACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29068579 100 - 170955103 ---AGTCTCCACTAACTCTCCTGC-TTCACTTCCGGTCTGCATTGGCTTGCTCA-TTTCTTCCCTGCTGAGCTCT-----------TTG---------GTTTGCTAAGCAGCATCTCCGGAACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2058448 100 -   2996164 ---AGTCTCCACTAACTCTCCTGC-TTCACTTCCGGTCTGCATTGGCTTGCTCA-TTTCTTCCCTGCTGAGCTCT-----------TTG---------GTTTGCTAAGCAGCATCTCCGGAACAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1921208 100 -   2157725 ---AGTCTCCACTAACTCTCCTGC-TTCACTTCCGGTCTACATTGGCTCACTTG-TTTCTTCCCTGCTGAGCTCT-----------TTG---------GTTTGCTAAGCAGCATCTCGGGAACAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28365078 100 -  71996105 ---AGTCTCCACTAACTCTCCTGC-TTCACTTCCGGTCTACATTGGCTCACTCA-TTTCTTCCCTGCTGAGCTCT-----------TTG---------GTTTGCTAAGCAGCATCTCGGGAACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2047521 100 +   2316924 ---AGTCTCCACTAACTCTCCTGC-TTCACTTCCGGTCTACATTGGCTCACTTG-TTTCTTCCCTGCTGAGCTCT-----------TTG---------GTTTGCTAAGCAGCATCTCGGGAACAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1925178 100 -   3067355 ---AGTCTCCACTAACTCTCCTGC-TTCACTTCCGGTCTGCATGGGCTCACTCA-TTTCTTCCCTGCTGAGCTCT-----------TTG---------GTTTGCTAAGCAGCATCTCGGGAACAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171451936  88 - 171630274 ---GGTCTCCACCAGCTCTCCTGCTTTCGCTTCTGGTCTACACTGGCTCGCGCG-TTCCTTCCCC---------------------------------GTTTGCTAAGCAGCATCTCCGGGGCAG
i calJac3.chr4             I 1 C 0
s saiBol1.JH378348            276861  86 -    375362 ---AGTCTGCAGCAGCTCTCCTGCTTTCGCTTCCGGTCTACACTGGCTCGCGCG-TTCCTT--CC---------------------------------GTTTGCTAAGCAGCATATCGGGGGCAG
i saiBol1.JH378348         I 1 C 0
s cebCap1.NW_016108108v1      274084  88 -    373274 ---AGTCTCCACCAGCTCTCCTGCTTTCGCTGCCGGTCTACACTGGCTCGCGCG-TTCCTTCCCT---------------------------------GTTTGCTAAGCAGCATCTCGCGGGCAG
i cebCap1.NW_016108108v1   I 69 C 0
s otoGar3.GL873742           1570510 113 -   2232465 ---GGTCTATGCTAATGCGCCTGCTCTCTTGTCTGGTCTGCGTTGGCTCGCTTGCTCTTTTCTCTCCTGAGCTCTTG---------TCGATTCGTTAAGCTTGCCAAGCCGCATTTCGCCAACAG
i otoGar3.GL873742         I 10 C 0
s canFam3.chr35             25939855  61 +  26524999 ---GCCCTCTGCT--CCCCCCCGC--------CCCGTCCACGCTCGCTCGCCCA----CCTCCCTGCTGAGCTCC-----------GCG------------------------------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             89512 115 -    302817 GCGGGTCTCCACCAGCTCTGAGGCTTTTTCCCCAGGTCCACACTGGCTCGCTCA-TTTCTTCCTTGCTGGGCTCCTGCAGACTCCACTG---------GTTTGCTAGGCAGCTGCTCAGGAGCAG
i dasNov3.JH561790         C 0 I 216
e aotNan1.NW_018494050v1      207131 151 -    285216 I

a score=201265.000000
s hg38.chr6_GL000254v2_alt    206434 51 +   4827813 CCCCCGTGCTATGTGTTCTTTCTTGTCATGGATATGTG-TTTTTTCTTGTCA
s panTro5.chr6              29193878 51 + 175400573 CCTCCGTGCTATGTGTTCTTTCTTGTCATGGATATGTG-TTTTTTCTTGTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29427902 51 + 173848474 CCCCCGTGCTATGTGTTCTTTCTTGTCATGGATATGTG-TTTTTTCTTGTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5228608 51 +   6154872 CCCCCGTGCTATGTGTTCTTTCTCGTCATGGATATGTG-TTTTTTCTTGTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74230957 52 + 122973662 CCCCCGTGCTATGTATTCTTTCTTGTCGTGGATACGTGTTTTTTTCTTGTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29407854 51 + 172585720 CCCCCGTGCTATATGTTGTTTCTTGTGCTGGATGTGAG-TTTTTTCTTGTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29068679 51 - 170955103 CCCCCGTGCTATATGTTGTTTCTTGTGCTGGATGTGAG-TTTTTTCTTGTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2058548 51 -   2996164 CCCCCGTGCTATATGTTGTTTCTTGTGCTGGATGTGAG-TTTTTTCTTGTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1921308 51 -   2157725 CCCCCGTGCTACATGTTGTTTCTTGCGCTGGATGTGAG-TTTTTTCTTGTCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28365178 51 -  71996105 CCCCCGTGCTACATGTTGTTTCTTGCGCTGGATGTGAG-TTTTTTCTTGTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2047621 51 +   2316924 CCCCCGTGCTACATGTTGTTTCTTGCGCTGGATGTGAG-TTTTTTCTTGTCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1925278 51 -   3067355 CCCCCGTGCTATATGTTGTTTCTTGTGCTGGATGTGAG-TTTTTTCTTGTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171452024 18 - 171630274 CCCC-GTGCTCTGTGTTCT---------------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            276947 17 -    375362 CCCC--TGCTCTGTGTTCT---------------------------------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      274172 17 -    373274 CCCC--TGCTCTGTGTTCT---------------------------------
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1570623 37 -   2232465 AGCTCGTGCTGTGTG--CTTTCTTGTCACGGATAGAGG-G------------
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25939916  9 +  26524999 -------------CGTTTTTCC------------------------------
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             89627 216 -    302817 I
e aotNan1.NW_018494050v1      207131 151 -    285216 I

a score=326691.000000
s hg38.chr6_GL000254v2_alt    206485 37 +   4827813 TGCTATGTGTTCTTTCTTGT---TCAAGGCAGAGTCGCGG
s panTro5.chr6              29193929 37 + 175400573 TGCTATGTGTTCTTTCTTGT---TCAAGGCAGAGTCGCGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29427953 37 + 173848474 TGCTATGTGTTCTTTCTTGT---TCAAGGCAGAGTCGCGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5228659 37 +   6154872 TGCTATGTGTTCTTTCTTGT---TCAGGGCAGAGTCGCGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74231009 37 + 122973662 TGCTATGTGTTCTTTCTTGT---TCAGGGCAGAGTCGCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29407905 37 + 172585720 TGCTATGTGTTCTTTCTCGT---TCAGGGGAGAGTCGCGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29068730 37 - 170955103 TGCTATGTGTTCTTTCTCGT---TCAGGGGAGAGTCGCGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2058599 37 -   2996164 TGCTATGTGTTCTTTCTCGT---TCAGGGGAGAGTCGCGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1921359 37 -   2157725 TGCTATGTGTTCTTTCTCGT---TCAGGGGAGAGTCGCGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28365229 37 -  71996105 TGCTATGTGTTCTTTCTCGT---TTAGGGGAGAGTCGCGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2047672 37 +   2316924 TGCTATGTGTTCTTTCTCGT---TCAGGGGAGAGTCGCGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1925329 37 -   3067355 TGCTATGTGTTCTTTCTCGT---TCAGGGGAGAGTCGCGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171452042 28 - 171630274 ---------TTCTTTCTTGT---TCAGGGCAGAGTCGCGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            276964 28 -    375362 ---------TTCTTTCTTGT---TAAGGGCCGAGTCGCGG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      274189 28 -    373274 ---------TTCTTTCTTGT---TCAGGGCAGAGTCGCAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      207282 37 -    285216 TGCTCTGTGTTCTTTCTTGT---TCAGGGCAGAGTCGCGG
i aotNan1.NW_018494050v1   I 151 C 0
s otoGar3.GL873742           1570660 34 -   2232465 ------GCTCACTCTCTTGTGGGCCAGCCCGGAGTCGGTG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25939925 10 +  26524999 ------------------------------AGAGCCGCGT
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             89627 216 -    302817 I

a score=584246.000000
s hg38.chr6_GL000254v2_alt    206522 64 +   4827813 CTGGGTTGTTAGGATGCTC-GCGCCCCT---GTACCCGGGGCGTGCAG-GGAAG----------------------TGTAAGAAGGGGGCG
s panTro5.chr6              29193966 64 + 175400573 CTGGGTTGTTAGGATGCTC-GCGCCCCT---GTACCCGGGGCGTGCAG-GGAAG----------------------TGTAAGAAGGGGGCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29427990 64 + 173848474 CTGGGTTGTTAGGATGCTC-GCGCCCCT---GTACCCAGGGCGTGCAG-GGAAG----------------------TGTAAGAAGGGGGCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5228696 64 +   6154872 CTGGGTTGTTAGGATGCTC-GCGCCCCT---GTACCCGGGGCGTGCAG-GGAAG----------------------TGTAAGAAGGGCGCG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74231046 63 + 122973662 CTGGGTTGTTAGGATGCTC-GCGCCCCT---GTACCCGGGTCGTGCAG-GGAAA----------------------TGT-AGAAGGGGGCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29407942 62 + 172585720 CTGGGTTGTTAGGATGCTC-GCGCCCC----GTACCCGGGACGTGCAG-GGAAG----------------------TGT-AGAAGGGGGCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29068767 62 - 170955103 CTGGGTTGTTAGGATGCTC-GCGCCCC----GTACCCGGGACGTGCAG-GGAAG----------------------TGT-AGAAGGGGGCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2058636 62 -   2996164 CTGGGTTGTTAGGATACTC-GCGCCCC----GTACCCGGGACGTGCAG-GGAAG----------------------TGT-AGAAGGGGGCG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1921396 62 -   2157725 CTGGGTTGTTAGGTTGCTT-GCGCCCC----GTACCCGGGACGTGCAG-GGAAG----------------------TGT-AGAAGGGGGCG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28365266 62 -  71996105 CTGGGTTGTTAGGATGGTC-GCGCCCC----GTACCCGGGACGTGCAG-GGAAG----------------------TGT-AGAAGGGGGCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2047709 62 +   2316924 CTGGGTTGTTAGGATGCTT-GCGCCCC----GTACCCGGGACGTGCAG-GGAAG----------------------TGT-AGAAGGGGGCG
i manLeu1.NW_012104165v1   C 0 I 7254
s colAng1.NW_012115566v1     1925366 62 -   3067355 CTGGGTTGTTACGATGCTC-GCGCCCC----GTACCCGGGACGTGCAG-GGAAG----------------------TGT-AGAAGGGGGCG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171452070 62 - 171630274 CTGGGTCGTTGGG-TGTTC-GCGCCCCT---GTACCCGGGGCGTGCAG-GGAAG----------------------TGT-AGACGGGGGCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            276992 61 -    375362 CTGGGTCGTTGGG-TGTTC-GCGCCCCT---GTACTTGGGGTGTGCAG-GGAAG----------------------TGT-AGAC-AGGGCG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      274217 61 -    373274 CTGGGTCGTTGGG-TGTTC-GCGCCCCT---GTACGCGGGGTGTGCAG-GGAAG----------------------TGT-AGAC-AGGGCG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      207319 62 -    285216 CCGGGTTGTTGGG-TGCTC-GCGCCCCT---GTACGCGGGGCGTGCAG-GGAAG----------------------TGT-AGATGGGGGCG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1570694 64 -   2232465 CTGGGTTGTTAGGATGATC-GCACTCCT---ATACCTGAGAGCCGAAGAGGAAG----------------------GGT-AGAGGGAAGAG
i otoGar3.GL873742         C 0 I 5
s canFam3.chr35             25939935 55 +  26524999 CCCACGCGCTGGG---CTC-GCGCAGG--------GCGGGGAGGGCAG-GGGAC----------------------TGC-AGAGGAATCCG
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             89843 85 -    302817 CAGGGTCCCTGCGATGACCAGGGCCCCTGCGATGGCCAGGGCGTACTG-CGATGGCAAAGCTTCACTCCTGTCCCCTGT-GGAGGGG----
i dasNov3.JH561790         I 216 C 0

a score=277246.000000
s hg38.chr6_GL000254v2_alt    206586 25 +   4827813 AGGGGCGAGAAACGCTGAATTCTAG
s panTro5.chr6              29194030 25 + 175400573 AGGGGCGAGAAACGCTGAATTCTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29428054 25 + 173848474 AGGGGCGAGAAACGCTGAATTCTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5228760 25 +   6154872 AGGGGCGAGAAACGCTGAATTCTAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74231109 25 + 122973662 AGGGGCGAGAAACGCTGAATTCTAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29408004 25 + 172585720 AGGGGCGAGAAACGCTGAATTCTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29068829 25 - 170955103 AGGGGCGAGAAACGCTGAATTCTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2058698 25 -   2996164 AGGGGCGAGAAACGCTGAATTCTAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1921458 25 -   2157725 AGGGGCGAGAAACGCTGAATTCTAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28365328 25 -  71996105 AGGGGCGAGAAACGCTGAATTCTAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2055025 25 +   2316924 AGGGGCGAGAAACGCTGAATTCTAG
i manLeu1.NW_012104165v1   I 7254 C 0
s colAng1.NW_012115566v1     1925428 25 -   3067355 AGGGGCGAGAAACGCTGAATTCTAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171452132 25 - 171630274 AGGGGCGACAAACGCTAAATTTCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            277053 25 -    375362 AGGGGTGAGAAACGCTATATCTTTG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      274278 25 -    373274 AGGGGCGAGAAACGCTAAGTTTTAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      207381 25 -    285216 AGGGGCGACAAACGCTAAATTTTAG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1570763 25 -   2232465 AAGGACGGGAAACGCTGACTTCTAG
i otoGar3.GL873742         I 5 C 0
s canFam3.chr35             25939990  7 +  26524999 ----------AAGGC--------AG
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             89928 25 -    302817 CGGGGTCGGTGGCCCTTGGTTCTGG
i dasNov3.JH561790         C 0 I 170

a score=459835.000000
s hg38.chr6_GL000254v2_alt    206611 44 +   4827813 CCTGAATTGG--TAGGAGAGCCTCGCAAGCTGAGTCACGGTTCCTG
s panTro5.chr6              29194055 44 + 175400573 CCTGAATTGG--TAGGAGAGCCTCGCAAGTTGAGTCACGGTTCCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29428079 44 + 173848474 CCTGAATTGG--TAGGAGAGCCTCGCAAGTTGAGTCACGGTTCCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5228785 44 +   6154872 CCTGAATTGG--TAGGAGAGCCTCGCAAGTTGAGTCACGGTTCCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74231134 44 + 122973662 CCTGAATTGG--GAGGAGAGCCTCGCGAGTTGAGTCACGGTTCCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29408029 44 + 172585720 CCTGAAATGA--GAGGAGAGCCTCGCGAGTTGAGTTACGGTTCCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29068854 44 - 170955103 CCTGAATTGG--GAGGAGAGCCTCGCGAGTTGAGTTACGGTTCCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2058723 44 -   2996164 CCTGAATTGG--GAGGAGAGCCTCGCGAGTTGAGTTACGGTTCCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1921483 44 -   2157725 CCTGAATTGG--GAGGAAAGCCTAGCGAGTTGAGTTACGGTTCCTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28365353 44 -  71996105 CCTGAATTGG--GAGGAGAGCCTCGCGAGTTGAGTTACGGTTCCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2055050 44 +   2316924 CCTGAATTGG--GAGGAGAGCCTCGCGAGTTGAGTTACGGTTCCTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1925453 44 -   3067355 CCTGAATTGG--GAGGAGAGCCTCGCGAGTTGAGTTACGGTTCCTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171452157 44 - 171630274 CCCGAACTGG--AAAAAGCGCTTCCTGAGTTGAGTCACGGCTCCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            277078 46 -    375362 CCCGAACTGGAAAAAAAGTGCCTCGTGAGTTGAGTCGCGGCTCCTG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      274303 44 -    373274 CCCGAATTGA--AAAAAGCGCCTCGCGAGTTGAGTCCCGGCACCTG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      207406 44 -    285216 CCCGAATTGG--AAAAAGCGCTTCGCGAATTGAGTCACGGCTCCTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1570788 44 -   2232465 TTCAGATTGG--GAGGAAAGCCTAGCGAGTTGAATCAAAGTTTCTG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25939997 44 +  26524999 CCTGCGTGGA--GAGCAAAGCCTCACGACTTCACTCCAAGTTCCTG
i canFam3.chr35            C 0 I 75
e dasNov3.JH561790             89953 170 -    302817 I

a score=172955.000000
s hg38.chr6_GL000254v2_alt    206655 22 +   4827813 ATTCCATTTAA-----------ATAGAACGT----TT
s panTro5.chr6              29194099 22 + 175400573 ATTCCATTTAA-----------ATAGAACGT----TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29428123 22 + 173848474 ATTCCATTTAA-----------ATAGAACGT----TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5228829 22 +   6154872 ATTCCATTTAG-----------ATAGAACGT----TT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74231178 22 + 122973662 ATTCCATTTAG-----------ATAGAACGT----TT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29408073 22 + 172585720 ATTCCATTTAG-----------ATAGAACGT----TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29068898 22 - 170955103 ATTCCATTTAG-----------ATAGAACGT----TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2058767 22 -   2996164 ATTCCATTTAG-----------ATAGAACGT----TT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1921527 22 -   2157725 ATTCCATTTAG-----------ACAGAACGT----TT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28365397 22 -  71996105 ATTCCATTTAG-----------ATAGAACGT----TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2055094 22 +   2316924 ATTCCATTTAG-----------ATAGAACGT----TT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1925497 22 -   3067355 ATTCCATTTAG-----------ATAGAACGT----TT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171452201 22 - 171630274 ATTCCATGTAG-----------ACAGAACGTTG----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            277124 20 -    375362 ATTCCATGTAG-----------ACAGAATAT------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      274347 20 -    373274 ATTCCATGTAG-----------ACAGAATGT------
i cebCap1.NW_016108108v1   C 0 I 97
s aotNan1.NW_018494050v1      207450 22 -    285216 ATTCCATGTAG-----------ACAGAACGT--TG--
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1570832 33 -   2232465 ACTCTATCGAGAAAAAAACAAAACAAAACTT----TC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             89953 170 -    302817 I
e canFam3.chr35             25940041 75 +  26524999 I

a score=444422.000000
s hg38.chr6_GL000254v2_alt    206677 65 +   4827813 TGTTCACTTG--------TAGGAATTTCC-TTTTCCATTTCTTTCATTAAATCGCGAACG--------TAGTAATGACTTAA
s panTro5.chr6              29194121 65 + 175400573 TGTTCACTTG--------CAGGAATTTCC-TTTTCCATTTCTTTCATTAAATCGCGAACG--------TAGTAATGACTTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29428145 65 + 173848474 TGTTCACTTG--------TAGGAATTTCC-TTTTCCATTTCTTTCATTAAATCGCGAACG--------TAGTAATGACTTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5228851 50 +   6154872 TG-----------------------TTCC-TTTTCCATTTCTTTCATTAAATCGCGAACG--------TAGTAATGACTTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74231200 65 + 122973662 TGTTCACTTG--------TAGGAATTTAC-TTTTCCATTTCTTTCATTAAATCGCGAATG--------TAGTAATGACTTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29408095 72 + 172585720 TGTTAACTTGTAGGAATTTAGGAATTTCC-TTTTCCATTTCTTTCATTAAACCGCGAACG--------TAGTAATGACTT-A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29068920 72 - 170955103 TGTTAACTTGTAGGAATTTAGGAATTTCC-TTTTCCATTTCTTTCATTAAATCGCGAACG--------TAGTAATGACTT-A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2058789 72 -   2996164 TGTTAACTTGTAGGAATTTAGGAATTTCC-TTTTCCATTTCTTTCATTAAACCGCGAACG--------TAGTAATGACTT-A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1921549 64 -   2157725 TGTTAACTTG--------TAGGAATTTCC-TTTTCCATTTCTTTCATTAAACCGCGAACG--------TAGTAATGACTT-A
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28365419 64 -  71996105 TGTTAACTTG--------TAGGAATTTCC-TTTTCCATTTCTTTCATTAAACCGCGAACG--------TAGTAATGACTT-A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2055116 65 +   2316924 TGTTAACTTG--------TAGGAATTTCCTTTTTCCATTTCTTTCATTAAACCGCGAACG--------TAGTAATGACTT-A
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1925519 64 -   3067355 TGTTAACTTG--------TAGGAATTTCC-TTTTCCATTTCTTTCATTAAACTGCGAACG--------TAGTAATGACTT-A
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171452223 64 - 171630274 TGTTCAGTGG--------CTGGAATTTTC-TTCTCCATTTCTTTCATTAAATTGCGAACA--------CATTCACGGTTT-A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            277144 51 -    375362 --GTCAGTGG--------CTGGAAT------------TTTCTTTCATTAAATCGCGAAGA--------CAGTAACGGTTT-G
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      207472 64 -    285216 TGTTCAGTGG--------CTGGAATTTTC-TTTTCCATTTCTTTCATTAAACTGCGAACA--------CAGTAACGGTTT-A
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1570865 72 -   2232465 TGTTAATTTA--------TAGAGATTTAC-TTTTCCATTTCTTAGGTTAATCCCCAAAGTGTAAAAACTAATAACGGCAC-A
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             89953 170 -    302817 I
e canFam3.chr35             25940041 75 +  26524999 I
e cebCap1.NW_016108108v1      274367 97 -    373274 I

a score=361548.000000
s hg38.chr6_GL000254v2_alt    206742 48 +   4827813 CGCTGGTTACGCATTCATT---ACAATCGAAGATTATATTAATTTGCGATG
s panTro5.chr6              29194186 48 + 175400573 CGCTGGTTACGCATTCATT---ACAATCGAAGATTATATTAATTTGCGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29428210 48 + 173848474 CGCTGGTTACGCATTCATT---ACAATCGAAGATTATATTAATTTGCGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5228901 48 +   6154872 CGCTGGTTACACATTCATT---ACAATCGAAGATTATATTGATTTGCGATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74231265 48 + 122973662 CGCTGGTTAAACATTCATT---ACAATCGAAGATTATATTGATTTGCGAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29408167 48 + 172585720 CACTGGTTGCACATTCATT---ACAATTGAAGATTATATTGATTTGCGAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29068992 48 - 170955103 CACTGGTTGCACATTCATT---ACAATTGAAGATTATATTGATTTGCGAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2058861 48 -   2996164 CACTGGTTGCACATTCATT---ACAATTGAAGATTATATTGATTTGCGAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1921613 48 -   2157725 CGCTGGTTGCACATTCATT---ACAATTGAAGATTATATTGATTTGCGAGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28365483 48 -  71996105 CACTGGTTGCACATTCATT---ACAATTGAAGATTATATTGATTTGCGAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2055181 48 +   2316924 CGCTGGTTGCACATTCCTT---ACAATTGAAGATTATATTGATTTGCGAGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1925583 48 -   3067355 CACTGGTTACACATTCATT---ACAATTAAAGATGATATTGATTTGCGAGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171452287 46 - 171630274 CGCTGGTGACACATCCATC---ATAGTTGAAGATGAGGCTCAGTGACGA--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            277195 46 -    375362 CGCTGGTGACACACTCATC---AACGTTGAAGATGATGCTCAGTGGCAG--
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      207536 46 -    285216 CGCTGGTGACACATTCATC---ACAGTTGAAGATGATGCTCCGTGGCGA--
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1570937 49 -   2232465 CATTAGGCACACAGTCATCATAATAATTGGAGATTATATTCTTTTGAGG--
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25940116 46 +  26524999 TACCGGCTGCTCATTTATA---ACAACGGAAGATTATATCCATGTGGGG--
i canFam3.chr35            I 75 C 0
e dasNov3.JH561790             89953 170 -    302817 I
e cebCap1.NW_016108108v1      274367 97 -    373274 I

a score=46166.000000
s hg38.chr6_GL000254v2_alt    206790 10 +   4827813 GTAAGTGTCC
s panTro5.chr6              29194234 10 + 175400573 GAAAGGGTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29428258 10 + 173848474 GAAAGGGTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5228949 10 +   6154872 ATAAGCGTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74231313 10 + 122973662 GCAAGTGTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29408215 10 + 172585720 GTAAGTGTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29069040 10 - 170955103 GCAAGTGTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2058909 10 -   2996164 GCAAGTGTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1921661 10 -   2157725 GGGAGTGTCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28365531 10 -  71996105 GCAAGTATCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2055229 10 +   2316924 GGGAGTGTCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1925631 10 -   3067355 ACAAGTTTCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171452333 10 - 171630274 GTGAGGACCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            277241 10 -    375362 GCAAGGACCC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      274464 10 -    373274 GTAAGGACCG
i cebCap1.NW_016108108v1   I 97 C 0
s aotNan1.NW_018494050v1      207582 10 -    285216 GCAAGGCCCT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1570986 10 -   2232465 GCGCTATTCT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25940162 10 +  26524999 CCCGGGTTTC
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             89953 170 -    302817 I

a score=3590949.000000
s hg38.chr6_GL000254v2_alt    206800 354 +   4827813 CAGGTgtcaggatggccgagtggtctaaggcgccagactcaagcttggcttcctcgtgttgaggattctggtctcca-atggaggcgtgggttcgaatcccacttctgacacAACTATCTTAT--TCTCCTTTTA-C-TC---TACT-TTCTCAGCCATTTCTGTGTTTTCATTCTTTCTA----CCTCAACTTTTTTTATTCTAACTAAAATGATACACTCTC--AATGAGGTCTGCCCCCTTGCTTTTCAGTCTTGTTCGCTGTTTAGTAGTGAATCACGTTTTGCCC---CGCTTTGGTCA--------GTTCGTTAAAAGGCGCATTCATTTACCACATGAGCACTCACCCAGAGGCGTACTGGGAGGAAACTAGA
s panTro5.chr6              29194244 354 + 175400573 CAGGTgtcaggatggccgagtggtctaaggcgccagactcaagcttggcttccttgtgttgaggattctggtctcca-atggaggcgtgggttcgaatcccacttctgacacAACCATCTTAT--TCTCCTTTTA-C-TC---TACT-TTCTCAGCCATTTCTGTGTTTTCATTCTTTCTA----CCTCAACTTTTTTTATTCTAACTAAAATGATACACTCTC--AATGAGGTCTGCCCCCTTGCTTTTCAGTCTTGTTCGCTGTTTAGTAGTGAATCACGTTTTGTCC---CGCTTTGGTCA--------GTTCGTTAAAAGGCGCATTCATTTACCACATGAGCACTCACCCAGAGGCGTACTGGGAGGAAACTAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29428268 354 + 173848474 TAGGTgtcaggatggccgagtggtctaaggcgccagactcaagcttgccttccttgtgttgaggattctggtctcca-atggaggcgtgggttcgaatcccacttctgacacAACCATCTTAT--TCTCCTTTTA-C-TC---TACT-TTCTCAGCCATTTCTGTGTTTTCATTCTTTCTA----CCTCAACTTTTTTTATTCTAACTAAAATGATACACTCTC--AATGAGGTCTGCCCCCTTGCTTTTCAGTCTTGTTCGCTGTTTAGTAGTGAATCACGTTTTGTCC---CGCTTTGGTCA--------GTTCGTTAAAAGGCGCATTCATTTACCACATGAGCACTCACCCAGAGGCGTACTGGGAGGAAACTAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5228959 354 +   6154872 CAAGTgtcaggatggccgagtggtctaaggcgccagactcaagcttggcttcctcgtgttgaggattctggtctcca-atggaggcgtgggttcgaatcccacttctgacacAAATATCTTAT--TCTCCTTTTA-C-TC---TACT-TTCTCAGCCATTTCTGTGTTTTCATTCTTTCTA----CCTCAACTTTTTTTATTCTAACTAAAATGATACACTCTC--AATGAGGTCTGCCCCCTTGCTTTTCAGTCTTGTTCGTTGTTTAGTAGTGAATCACGTTTTGCCC---CGCTTTGGTCA--------GTTCGTTAAAAGGCGCATTCATTTACCACATGAGCACTCACCCAGGGGCGTACTGGGAGGAAACTAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74231323 350 + 122973662 CAGGTgtcaggatggccgagtggtctaaggcgccagactcaagcttggcttcctcgtgttgaggattctggtctccg-atggaggcgtgggttcgaatcccacttctgacacAGCCATTTTAT--TCTCCCTCTA-C-TC---TACT-T----AGCCATTTCTGTGTTTTCATTCTTTCTA----CCTCAACTTTTTCGATTCTAACTAAAATGATGCACTCTC--AATGAGGTCTGCCCCCTTCCTTTTCAGTCTTGTTCGCTGTTTAGTAGTGAATCACGTTTTGCCC---TGCTTTGGTCA--------GTTCGTTAAAAGGAGCATTCATTTACTACATGAGCACTCACCCAGAGGCGTCCTGGGAGGAAACTAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29408225 348 + 172585720 CAGGTgtcaggatggccgagtggtctaaggcgccagactcaagcttggcttccccgtgttgaggattctggtctcca-atggaggcgtgggttcgaatcccacttctgacacATGAATTTTGT--TCTCCTTCCA-C-TC---TGCT-TTCTCAGCCATTTCTGTGTTTTCATTCTCTCT----------ACTTTTTCTATCCTAACTAAAATTATACACTTTC--AATGAGGTCTATCCCCTTCCTTTTCGGTCTTGTTCGCTGTTTAATAGTGAATCACGTTTTGCTC---TGCTTTGGTCA--------GTTCGTTAAAAGGCGCATTCATTTACTACATGAGCACTCACCCAGAGGCGTCCTGGGAGGAAACCAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29069050 348 - 170955103 CAGGTgtcaggatggccgagtggtctaaggcgccagactcaagcttggcttccccgtgttgaggattctggtctcca-atggaggcgtgggttcgaatcccacttctgacacATGTATTTTAT--TCTCCTTCCA-C-TC---TGCT-TTCTCAGCCATTTCTGTGTTTTCATTCTCTCT----------ACTTTTTCTATCCTAACTAAAATTATACACTTTC--AATGAGGTCTATCCCCTTCCTTTTCGGTCTTGTTCGCTGTTTAATAGTGAATCACGTTTTGCTC---TGCTTTGGTCA--------GTTCGTTAAAAGGCGCATTCATTTACTACATGAGCACTCACCCAGAGGCGTCCTGGGAGGAAACCAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2058919 348 -   2996164 CAGGTgtcaggatggccgagtggtctaaggcgccagactcaagcttggcttccccgtgttgaggattctggtctcca-atggaggcgtgggttcgaatcccacttctgacacATGTATTTTAT--TCTCCTTCCA-C-TC---TGCT-TTCTCAGCCATTTCTGTGTTTTCATTCTCTCT----------ACTGTTTCTATCCTAACTAAAATTATACACTTTC--AATGAGGTCTATCCCCTTCCTTTTCGGTCTTGTTCGCTGTTTAATAGTGAATCACGTTTTGCTC---TGCTTTGGTAA--------GTTCGTTAAAAGACGCATTCATTTACTACATGAGCACTCACCCAGAGGCGTCCTGGGAGGAAACCAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1921671 348 -   2157725 CAGGTgtcaggatggccgagtggtctaaggcgccagactcaaggttggcttcctcgtgttgaggattctggtctcca-atggaggcgtgggttcgaatcccacttctgacacATGTGTTTTAT--TCTCCCTTCA-C-TC---TGCT-TTCTCAGCCATTTCTGTGTTTTCATTCTCCCT----------ATTTTTTCTATCCTAACTAAAATGATACACTATC--AATAAGGTCTATCCTCTTCCTTTTCAGTCTTGTTCGCTGTTTAATAGCGAATCACGTTTTGCTC---TGCTTTGGTCA--------GTTCGTTAAAAGGCGCATTCATTTACTACATGAGCACTCACCCAGAGGCGTCCTGGGAGGAAACCAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28365541 348 -  71996105 CAGGTgtcaggatggccgagtggtctaaggcgccagactcaagcttggcttcctcgtgttgaggattctggtctcca-atggaggcgtgggttcgaatcccacttctgacacATGTATTTTAT--TCTCCCTCCA-C-TC---CACT-TTCTCAGACTTTTCTGTGTTTTCATTCTCTCT----------ACTTTTTCTATCCTAACTAAAATGATACACTATC--AATGAGGTCTATCCTCTTCCTTTTCAGTCTTGTTCGCTGTTTAATAGTGAATCACGTTTTGCTC---TGCTTTGGTCA--------GTTCGTTAAAAGGCGCGTTCATTTACTACATGAGCACTCACCCAGAGGCGTCCTGGGAGGAAACCAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2055239 348 +   2316924 CAGGTgtcaggatggccgagtggtctaaggcgccagactcaaggttggcttcctcgtgttgaggattctggtctcca-atggaggcgtgggttcgaatcccacttctgacacATCAGTTTTAT--TCTCCCTTCA-C-TC---TACT-TTCTCAGCCATTTCTGTGTTTTCATTCTCCCT----------ACTTTTTCTATCCTAACTAAAATGATACACTATC--AATAAGGTCTATCCTCTTCCTTTTCAGTCTTGTTCGCTGTTTAATAGCGAATCACGTTTTGCTC---TGCTTTGGTCA--------GTTCGTTAAAAGGCGCATTCATTTACTACATGAGCACTCACCCAGAGGCGTCCTGGGAGGAAACCAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1925641 348 -   3067355 CAGGTgtcaggatggccgagtggtctaaggcgccagactcaagcttggcttccccgtgttgaggattctggtctcca-atggaggcgtgggttcgaatcccacttctgacacATGTATTTTAT--TCTCCCTCCA-C-TC---TACT-TTCTCAGCCATTTCTGTGTTTTCATTATCTCT----------ACTTTTCCTATCCTAACTAAAATGATACACTCTC--AATGAGGTCTATCCCCTTCCTTTTTAGTCTTGTTCGCTGTTTAATAGTGAATCACGTTTTGCTC---TGCTTTGGTCA--------GTTCCTTAAAAGGCGCATTCATTTACTACATGAGCACTCACCCAGAGGCGTCCTGGGAGGAAACCAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171452343 339 - 171630274 CAGGTgtcaggatggccgagtggtctaaggcgccagactcaagtcttgcttcctcgtgctgaggattctggtctccagatggaggcgtgggttcgaatcccacttctgacacAGCTCTTTTAT--TCTCCCTGAA-C-TT---TACT-TTCTCAGCCAGTTC--TGTTTTCATTGTCTCTA----CCTTTACTTTTTCGACCCTAACTAAAACGATACACCCTC--AGTGAGGTAAGTCTCCTTCGTTTTCAGTCTTGTTCGCTGTTTAATAGTGAATCACGTTTTG-------------------------GTTGGTTACGGGGCGTATTCATTTACTACAGGAGCGCTCAGCCAGAAGTGTCCTGGGAGGAAGCCACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            277251 343 -    375362 CAGGTgtcaggatggccgagtggtctaaggcgccagactcaagccctgcttcctcgtgctgaggattctggtctccagatggaggcgtgggttcgaatcccacttctgacacAGTTCTTTTAT--TCTCCCTGAA-C-TT---TACT-TTCACAGCCACTTCTGTGTTTTCATTGTCTCTA----CCTTTACTTTTTCGACCCTAACTAAAATGATACACCCTCCTAGAGGTGTATGTCTCCTTCGTTTTCAGTCTTGCTCGCTGTTGAATAGTGAACCACGTTTTG-------------------------GTTGGTTAAAGGGCGTATTCATTTACTACAGGAGCACTCAGCCAGAAGCGTCCTGGGAGGAAGCCACC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      274474 341 -    373274 CAGGTgtcaggatggccgagtggtctaaggcgccagactcaagccctgcttcctcgcgctgaggattctggtctccagatggaggcgtgggttcgaatcccacttctgacacAGCTGTTTTAT--TCTCCCTGAA-C-TT---TAGT-TTTCGCACCACCTCTGTGTTTTCATGGTCTCTA----CCTTTACGTTTTCGACCCTAACTAAAATGATGCACCCTC--AATGAGGTATGTCTCCTTCGTTTTCAGTCTTGTTAGCTGTTTAATGGTGAATCACGTTTTG-------------------------GTTGGTTAAAGGGCGCATTCATTTACTATAAGAGCACTCAGCAAGAAGCGTCCTGGGAGGAAGCCACC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      207592 342 -    285216 CAGGTgtcaggatggccgagtggtctaaggcgccagactcaagccttgcttcctcgtgctgaggattctggtctccagatggaggcgtgggttcgaatcccacttctgacacAGCTCTTTTAT--TCTCCCTGAA-CATT---TACT-TTCTCAGCCACTTCTGTGTTTTCATTGTCTCTG----CCTTTACTTTTTCGACCCTAACTAAAATGATACACCCTC--AATGAGGTGTGTCTCCTTCGTTTTCAGTCTTGTTCGCTCTTTAATAGTGAATCACGTTTTG-------------------------GTTGGTTACAGGGCGCATTCATTTACTACAGGAGCACTCAGCCAGAAGCGTCCTGGGAGGAAGCCACC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1570996 329 -   2232465 TGAGTgtcaggatggccgagtggtctaaggcgccagactcaagttctacttcctcaggttgaggattctggtctccaaatggaggcgtgggttcgaatcccacttctgacacAATCTTTTTCTGCCCTCCTCTCA-A-TCCGTCACT-TTCTCAGCCATTTCT---TTTTCTACTTCTCTAGACCTTTTCTCTTTTTCCATCCTAACTAAAAT-------------GATGAGGTCTGTCCCCTTCTTTTTTCATCTCCTTCTCTATGTGCT----------------CTT---TGCTCTGGTTA--------TTTCATTAAAGG-----CACATTTACTAAATGCACACTTACCCAGGGGCGCCCTCAAGCGAAAATTAA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25940172 325 +  26524999 CGGGTgtcaggatggccgagtggtctaaggcgccagactcaagctccgcttcctcgaa-ggagggttctggtctccgcatggaggcgtgggttcgaatcccacttctgacacGTCCTTTTTGC--CCGCCTCGGATC-TC---AACTGTTCTC-----CTTCTGTCTTCTGTCTGCTTTT----------CCTTTTGCGACCCCGA--------AGCCGGGCCT--TAGGGAGGCTGTCCCTTTCCTTCCCCGCTTCGGTGACAGT--GACCGGGGACCACGTCCCTCCCGCACCCTCTGTTCATCGCAGGCGCTTGCCAGGGCGCGCGTGGATCCGGGACGTGGACGC------AGGGACGTGC---------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             90123 275 -    302817 CGGCTgtcaggatggccgagtggtctaaggcgccagactcaagtgtcacttcctctccgtgagggttctggtctccgaatggaggcgtgggttcgaatcccacttctgacaG-------------GCGGCTTTTC-A-GT---TACT-TTT---GGAATTTTGGCGCTTTTCTCACTTTT----------AGTTTCCACCCTCTACCCACCATTTTCTTTTTGT--AGCCAGTTC---CTCCTTCCTTTT-------------------------------------------GGCACCTGCCG--------AGTCATTACCAGGTTC----------------CGCGCGTACCCTGCGG-GTCCTGAGAGCAGCCTGGC
i dasNov3.JH561790         I 170 I 13

a score=448477.000000
s hg38.chr6_GL000254v2_alt    207154 50 +   4827813 CTAGGTAGGAATAGAAAGACATGTATACAGACTCCATCATTACATACTGG
s panTro5.chr6              29194598 50 + 175400573 CTAGGTAGGAATAGAAAGACATGTATACAGACTCCATCATTACATACTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29428622 50 + 173848474 CTAGGTAGGAATAGAAAGACATGTATACAGACTCCATCATTACATACTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5229313 50 +   6154872 CTAGGTAGGAATAAAAAGACATGTATACAGACTCCATCATTACATACTGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74231673 50 + 122973662 CTAGGTAGGAATAGAAACACATGTATACAGACTCCATCATTACATACTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29408573 49 + 172585720 CTAGGTGGGAGTAGAAAGACATGTATGCAGACTCCACTATTAC-TACTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29069398 50 - 170955103 CTAGGTGGGAGTAGAAAGACATGTATGCAGACTCCACTATTACATACTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2059267 50 -   2996164 CTAGGTGGGAGTAGAAAGACATGTATGCAGACTCCACTATTACATACTGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1922019 50 -   2157725 CTAGGTGGGGGTAGAAAGACATGTATACAGACTCCATTATTACATACTGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28365889 50 -  71996105 CTAAGTGGGGGTAGAAAGACATGTATACAGACTCCATTATTACATACTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2055587 50 +   2316924 CTAGGTGGGGGTAGAAAGACATGTATACAGACCCCATTATTACATACTGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1925989 50 -   3067355 CTAGGTAGGAGTAGAAAGACATGTATACAGACTCCATTATTACATACTGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171452682 50 - 171630274 CTAGGTGAGAACAGAAAGACGCCTATACCAACTCCATTGTTACACATTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            277594 50 -    375362 CTAGGTGAGAACAGAAAGACTTGTATACCAACTACATTATTACACATTGG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      274815 50 -    373274 CTAGGTGAGAACAGAAAGACGTGTATACCAACTCCATTATTACACATCGG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      207934 50 -    285216 CTAGGTGAGAACAGAAAGACGTGTATACCGACTCCATTATTACACATTGG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1571325 49 -   2232465 TCTGATGGGAAAGAAAAGACAC-TACAAGGCATCTGTGATTATGGTCTGG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25940497 22 +  26524999 ---------------GAGCCACACAGCCGGTCCCCAT-------------
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             90398 13 -    302817 I

a score=2470008.000000
s hg38.chr6_GL000254v2_alt    207204 223 +   4827813 CCCTGAGCTCATAGGTTATTGGGACCGCAGATTACATGTTTTTCCTCACGGCCAGAAACCATCAAAAA-TAAAAGTGATGAAACTGAAATTGAA----AGCAGCAAGGTTCACGCTCAAGGTTATCGGAAACAAGGCAAAAGGAGAGAAAT--GAAaggttccaccgagatttgaactcggatcgctggattcagagtccagagtgctaaccattacaccatggaaccCT
s panTro5.chr6              29194648 222 + 175400573 CCCTGAGCTCATAGGTTATTGGGACCGCAGATTACATGTTTTTCCTCAAGGCCAGAAACCATCAAAAA-TAAAAGTGATGAAACTGAAATTGAA----AGCAGCAAGGTTCACGCTCAA-GTTATCGGAAACAAGGCAAAAGGAGAGACAT--GAAaggttccaccgagatttgaactcggatcgctggattcagagtccagagtgctaaccattacaccatggaaccGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29428672 222 + 173848474 CCCTGAGCTCATAGGTTATTGGGACCGCAGATTACATGTTTTTCCTCAAGGCCAGAAACCATCAAAAA-TAAAAGTGATGAAACTGAAATTGAA----AGCAGCAAGGTTCACGCTCAA-GTTATCGGAAACAAGGCAAAAGGAGAGACAT--GAAaggttccaccgagatttgaactcggatcgctggattcagagtccagagtgctaaccattacaccatggaaccGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5229363 222 +   6154872 CCCTGAGCTCATAGGTTATTGGGACCGCAGATTACATGTTTTTCCTCACGGCCAGAAACCATCAAAAA-TAAAAGTGATGAAACTGAAATTGAA----TGCAGCAAGGTTCACGCTCCA-GTTATCGGAAACAAGGCAAAAGCAGAGAAAC--GAAaggttccaccgagatttgaactcggatcgctggattcagagtccagagtgctaaccattacaccatggaaccCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74231723 222 + 122973662 CCCTGAGCTCATAGGTTATTGGGACCGCAGAATACATGTTTTTCCTCAAGACCAGAAACCATCAAAAA-TAAAAGTGATGAAACTGAAAATGAA----AGCAGCAAGGTTCACGCTCAA-GTTACCGGAAGCAAGGCAAAAGGAGAGAAAT--GAAaggttccaccgagatttgaactcggatcgctggattcagagtccagagtgctaaccattacaccatggaaccCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29408622 224 + 172585720 CCCTGAGCTCATAGGTTATTGGGACTGCAGATTACATGTTTTTCCTCATGGCCAGACACCATCAAAAA-TCTAAGTGATGAAACTGAAATTGAA----AGCAGCAAGGTTCACGCTCAA-GTTACCGGAAGCAGGGCAAAAATAGAGAAATATGAAaggttccaccgagatttgaactcggatcgctggattcagagtccagagtgctaaccattacaccatggaaccCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29069448 224 - 170955103 CCCTGAGCTCATAGGTTATTGGGACTGCAGATTACATGTTTTTCCTCATGGCCAGACACCATCAAAAA-TCTAAGTGATGAAACTGAAATTGAA----AGCAGCAAGGTTCACGCTCAA-GTTACCGGAAGCAGGGCAAAAATAGAGAAATATGAAaggttccaccgagatttgaactcggatcgctggattcagagtccagagtgctaaccattacaccatggaaccCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2059317 224 -   2996164 CCCTGAGCTCATAGGTTATTGGGACTGCAGATTACATGTTTTTCCTCATGGCCAGACACCATCAAAAA-TCTAAGTGATGAAACTGAAATTGAA----AGCAGCAAGGTTCACGCTCAA-GTTACCGGAAGCAGGGCAAAAATAGAGAAATACGAAaggttccaccgagatttgaactcggatcgctggattcagagtccagagtgctaaccattacaccatggaaccAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1922069 224 -   2157725 CCCTGAGCTCATAGGTTATTGGGACTGCAGATTACGTGTTTTTCCTCACGGCCAGACACCATCAAAAA-TCAAAGTGATGAAAGTGAAATTGAA----AGCAGCAAGGTTCACGCTCAA-GTTACCGGAAACAGGGCAAAAAGAGAGAAATATGAAaggttccaccgagatttgaactcggatcgctggattcagagtccagagtgctaaccattacaccatggaaccCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28365939 221 -  71996105 CCCTGAGCTCATAGGTTATTGGGACTGCAGATTACGTGTTTTTCCTCACGGCCAGACACCATCAAAAA-T-AAAGTGATGAAAGTGAAATTGAA----AGCAGCAAGGTTCACGCTCAA-GTTACCGGAAGCAGGGCAAAA--AGAGAACTACGAAaggttccaccgagatttgaactcggatcgctggattcagagtccagagtgctaaccattacaccatggaaccCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2055637 224 +   2316924 CCCTGAGCTCATAGGTTATTGGGACTGCAGATTACGTGTTTTTCCTCACGGCCAGACACCATCAAAAA-TCAAAGTGATGAAAGTGAAATTGAA----AGCAGCAAGGTTCACGCTCAA-GTTACCGGAAACAGGGCAAAAAGAGAGAAATACGAAaggttccaccgagatttgaactcggatcgctggattcagagtccagagtgctaaccattacaccatggaaccCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1926039 228 -   3067355 CCCTGAGCTCATAGGTTATTGGGACTGCAGATTACATGTTTTCCCTCACGGCCAGACACCATCAAAAA-TCAAAGTGATGAAACTGAAATTGAAATTGAACAGCAAGGTTCACGCTCAA-GTTACCGGAAGCAGGGCAAAAAGAGAGAAATATGAAaggttccaccgagatttgaactcggatcgctggattcagagtccagagtgctaaccattacaccatggaaccCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171452732 225 - 171630274 TCCTGAGCTTACAGGTTATTGGCACCGCAGATTACATGTTTTTCCTCACGGCCAGAAACCATAAAAAATTCAAAGCGAAGAAACTGAAATGGAA----AGCGGCAAGGTTCATGCACAA-GTTACCGGAAGGAAAGCAAAAGGGGAGGAACATGAAaggttccaccgagatttgaactcggatcgctggattcagagtccagagtgctaaccattacaccatggaaccCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            277644 224 -    375362 CCCGGAGCTCATGGGTTATTGGCACCGCAGATTACATGTTTTTCCTCACGGCCAGAAACCATCAAAAA-CCAAAACGAAGAAACTGAAATTGAA----AGCAGCAAGGTTCATGCACAA-GTTACCGGAAGCGAAGCAAAAAGAGAGGAATATGAAaggttccaccgagatttgaactcggatcgctggattcagagtccagagtgctaaccattacaccatggaaccCT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      274865 190 -    373274 ----------------------------------CATGCTTTTTCTCACCGCCAGAAATCATCAAAAA-TCAAAACGAAGAAACCGAAATTGAA----AGCAGCAAGGTTCATGCACAA-GTTACCGGAAACAAAGCAAAAAGAGAGGACTATGAAaggttccaccgagatttgaactcggatcgctggattcagagtccagagtgctaaccattacaccatggaaccCT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      207984 222 -    285216 CCCTGAGCTTATGGGTTATTGGCACCGCAGATTACATGTTTCTCCTCACGGCCAGAAACCATCAAAAA-TCAAAGCGAAGAAACTGAAATTGAA----AGCGGCAAGGTTCATGCACAA-GTTACCGGAAGCAAAGCTAAAAGAGAAGA--ATGAAaggttccaccgagatttgaactcggatcgctggattcagagtccagagtgctaaccattacaccatggaaccCT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1571374 209 -   2232465 TCTTGCGCTAACGTGTTATCAGGATCGCACATTACACG-TTATACTAGCTTCTAGAATTCATC------CCAAAATTGTAGTATTGGAATTGAA----AGCAGCACGGTTCA--CTCTG-GT------AAGCCAAGAAAAAATACACAA-CATGAAaggttccaccgagatttgaactcggatcgctggattcagagtccagagtgctaaccattacaccatggaaccCC
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25940519 154 +  26524999 CCCGGGG--------------------------ACCTGCT-----------CCAG--CCCCTCAAAAA-TCTAAGGGCCCAGAGCGAAGATGAG----------AAGG--------CAG-GT------AAAAAAGATAAAAG-----------GAAaggttccaccgagatttgaactcggatcgctggattcagagtccagagtgctaaccattacaccatggaaccCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             90411 135 -    302817 CCCCAAGCT--------------------------------------------------CATCCAAAA-CGGAA-------------AATTATG----ATCAGAAAAG----------A-GTCAC----AGCAGTACACAA------------GTAaggttccaccgagatttgaactcggatcgctggattcagagtccagagtgctcaccattacaccatggaaccCT
i dasNov3.JH561790         I 13 I 1314

a score=315018.000000
s hg38.chr6_GL000254v2_alt    207427 40 +   4827813 ACTTAACAAAAAACGGATACTCGATCCACCTGGGGTCTC--------T
s panTro5.chr6              29194870 40 + 175400573 CCTCGGCAAGAAACGGATACTCGATCCACCTGGGGTCTC--------T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29428894 40 + 173848474 CCTCGGCAAAAAACGGATACTCGATCCACCTGGGGTCTC--------T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5229585 40 +   6154872 CCTTAGCAAGAAGCGGATACTCGATCCACCTGGGGTCTC--------T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74231945 40 + 122973662 GCTTAGGACTGCTTGGCTACTGGATCCACCTGGGGTCTC--------T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29408846 40 + 172585720 CCTTAGCAGAAGCCGAATACTCGATCCACCTGGGATCTC--------T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29069672 40 - 170955103 CCTTAGCAAAAGCCGAATACTCGATCCACCTGGGATCTC--------T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2059541 40 -   2996164 CCTTAGCAAAAGCCGAATACTCGATCCACCTGGGATCTC--------T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1922293 40 -   2157725 CCTTAGGAATGGTCGGATACTCGATCCACCTGGGATCTC--------T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28366160 40 -  71996105 CCTTAGCAGTGGCTGGATATTCGATCCACCTGGGATCTC--------T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2055861 40 +   2316924 CCTTAGGAATGGTAGGATACTCCATCCACCTGGGATCTC--------T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1926267 40 -   3067355 CCTTAGCCAGAGCTGGATATTCGATCCACCTGGGATCTC--------T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171452957 39 - 171630274 CCTTGAGGACGG-CGGATACTCGATCCATCTGGGGTCTC--------T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            277868 40 -    375362 CCTTAAGGAAAGCCGGATGCTTGATCCATCTGGGATCTG--------T
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      275055 40 -    373274 CCCTGAGGAAAGTTGGATACTCTATCCATCTGGGGTCTC--------T
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      208206 40 -    285216 CCTTGAGGAGGGTTGGATACTTGATCCATCTGCGGTCTC--------T
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1571583 48 -   2232465 TCCTAGAACTGGCTGGGCACACGGTTCATCTGGGTTCTCATCCCTTGT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25940673 40 +  26524999 ACTCGATGGTGCTCCTTCACACTGTCCATCTGAAATCTC--------T
i canFam3.chr35            C 0 I 254
e dasNov3.JH561790             90546 1314 -    302817 I

a score=248411.000000
s hg38.chr6_GL000254v2_alt    207467 30 +   4827813 CTTGTCTTC-----------------------------------------TACTTACTAATTGATTTAAAG
s panTro5.chr6              29194910 30 + 175400573 CTTCTCTTC-----------------------------------------TACTTACTAATTGATTTAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29428934 30 + 173848474 CTTCTCTTC-----------------------------------------TACTTACTAATTGATTTAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5229625 30 +   6154872 CGTTTCTTC-----------------------------------------TACTTACTAATTGATTTAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74231985 30 + 122973662 CTTTTCTTC-----------------------------------------TACTTACTAATTGATTTAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29408886 30 + 172585720 CTTTTCTTC-----------------------------------------TACTTACTAATTGATTTAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29069712 30 - 170955103 CTTTTCTTC-----------------------------------------TACTTAATAATTGATTTAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2059581 30 -   2996164 CTTTTCTTC-----------------------------------------TACTTACTAATTGATTTAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1922333 30 -   2157725 CTTTTCTTC-----------------------------------------TACTTACTAATTGATTTAAAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28366200 30 -  71996105 CTTTTCTTC-----------------------------------------TACTTACTAATTGATTTAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2055901 30 +   2316924 CTTTTCTTC-----------------------------------------TACTTACTAATTGATTTAAAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1926307 30 -   3067355 CTTTTCTTC-----------------------------------------TACTTACTAATTGATTTAAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171452996 26 - 171630274 CTTTTCTTC-----------------------------------------TACTT----ATTTATTTAAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            277908 26 -    375362 CTTTTCTTC-----------------------------------------TACTT----ATTTATTTAAAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      275095 26 -    373274 CTTTTCTTC-----------------------------------------TACTT----ATTTATTTAAAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      208246 21 -    285216 CTTTTCTTC-----------------------------------------TACTT----ATTTATT-----
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1571631 71 -   2232465 TTTTTCCTCAGAATGCAATTAAAATATCATTTTAAGTGAAACTTTTATGTTTCTTCCTAATTTATTTTAAG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             90546 1314 -    302817 I
e canFam3.chr35             25940713 254 +  26524999 I

a score=555362.000000
s hg38.chr6_GL000254v2_alt    207497  75 +   4827813 -TAATTTTGCAGGGGCAGTTTT---------------------TTTGTT---------------------------------TTGGATGGCCAAACGCAGGGATGGGAGGGGTAGGGCTCACACACTGTT
s panTro5.chr6              29194940  75 + 175400573 -TAATTTTGCAGGGGCAGTTTT---------------------TTTGTT---------------------------------TTGGATTGCCAAACGCAGGGATGGGAGGGGTAGGGCTCACACACTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29428964  75 + 173848474 -TAATTTTGCAGGGGCAGTTTT---------------------TTTGTT---------------------------------TTGGATTGCCAAACGCAGGGATGGGAGGGGTAGGGCTCACACACTGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5229655  75 +   6154872 -TAATTTTGCAGGGGCAGTTTT---------------------TTTGTT---------------------------------TTGGATTGCCAAATGCAGGGATGGGAGGGGTAGGGCTCACACACTGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74232015  74 + 122973662 -TAATTTTGCAGGGGCAG-TTT---------------------TTTGTT---------------------------------TTGGAGTGCCAAACGCAGGGATGGGAGAGGGAGGGCTCACACACTGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29408916  74 + 172585720 -TAATTTGGCAGCGGCAG-TTT---------------------TTTGTT---------------------------------TTGGAGTGCCAAACACAGGGATGGGAGAGGGAGGGCTCACATACTGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29069742  74 - 170955103 -TAATTTGGCAGCGGCAG-TTT---------------------TTTGTT---------------------------------TTGGAGTGCCAAACACAGGGATGGGAGAGGGAGGGCTCACATACTGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2059611  74 -   2996164 -TAATTTGGCAGCGGCAG-TTT---------------------TTTGTT---------------------------------TTGGAGTGCCAAACACAGGGATGGGAGAGGGAGGGCTCACATACTGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1922363  74 -   2157725 -TAATTTTGCAGGAGCAG-TTT---------------------TTTGTT---------------------------------TTGGAGTACCAAACACAGGGGTGCGAGAGGGAGGGCTCACACACTGTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28366230  74 -  71996105 -TAATTTTGCAGGAGCAG-TTT---------------------TTTGTT---------------------------------TTGGAGTACCAAACATAGGGGTGCGAGAGGGAGGGCTCACACACTGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2055931  74 +   2316924 -TAATTTTGCAGGAGCAG-TTT---------------------TTTGTT---------------------------------TTGGAGTACCAAACACAGGGGTGCGAGAGGGAGGGCTCACACACTGTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1926337  74 -   3067355 -TAATTTTGCAGGGGCAG-TTT---------------------TTTGTT---------------------------------TTGGAGTGCCAAACACAGGGATGGGAGACGGAGGGCTCACACGCTGTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            277934  95 -    375362 -TAACTTTGCAGGGGCAG-TTTTTGTTTTGTTTTGTTTGTTTGTTAGTT---------------------------------TTGGAGTGCCAAACGCAGGGTTGGCACAGGGAGGAGTCACAGACTGTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      275121  95 -    373274 -TAATTTTGCAGGGGCAG-TTtttgttttgctttgtttgtttgtttgtt---------------------------------tTGGAGTGCCAAACGCAGGGATGGCACGGGGAGGAGTCACACACTCTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      208267  90 -    285216 -TAATTTTGCAGGGGCAG-TTtttgt-----tttgtttgtttgtttgtt---------------------------------tTGGAGTGCCACACGCAGGGATGGCACGGGGAGGAGTCACACACTGTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1571702 102 -   2232465 CAATTTTTGCGGGAGCAGTGTT---------------------TTTGATAGAAAATCTGTATGCTTCACAGCGGCGGGGCGATAGAAGTGTCAAACTCTGGGGTG------GGAGGGTCCCTGTACT-TA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             90546 1314 -    302817 I
e canFam3.chr35             25940713 254 +  26524999 I
e calJac3.chr4             171453022   0 - 171630274 C

a score=743070.000000
s hg38.chr6_GL000254v2_alt    207572 86 +   4827813 TCCACCGCGCCTTTCTCCCAGATTTCTTTCCATCCTTCGGGGCA-GGGCAGTATACTGATCTGGGAATATGGTTATTCCTGGAGATT
s panTro5.chr6              29195015 86 + 175400573 TCCACCGCGCCTTTCTCCCAGATTTCTTTCCATCCTTCGGGGCA-GGGCAGTATACTGATCTGGGAATATGGCTATTCCTGGAGATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29429039 86 + 173848474 TCCACCGCGCCTTTCTCCCAGATTTCTTTCCATCCTTCGGGGCA-GGGCAGTATACTGATCTGGGAATATGGTTATTCCTGGAGATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5229730 85 +   6154872 TCCACCGCGCCTTTCTCCCAGATTTCTTTCCATCCTTC-GGGCA-GGGCAGTATACTGATCTGGGAATATGGTTATTCCTGGAGATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74232089 85 + 122973662 TCCACTGAGCCTTTCTCCCAGATTTTTTTCCATCCTTCGGGGCA-GGACAGTATACTGCTCTGGGAATATGGTTATTCCTGGAGA-T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29408990 85 + 172585720 TCCACTGCGCCTTTCTCCCAGGTTTCTTTCCATCCTTCGGGGCA-GCGCAGTATACTGATCTGGGAATATGGTTATTCCTGGAGAT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29069816 85 - 170955103 TCCACTGCGCCTTTCTCCCAGGTTTCTTTCCATCCTTCGGGGCA-GCGCAGTATACTGATCTGGGAATATGGTTATTCCTGGAGAT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2059685 85 -   2996164 TCCACTGCGCCTTTCTCCCAGGTTTCTTTCCATCCTTCGGGGCA-GCGCAGTATACTGATCTGGGAATATGGTTATTCCTGGAGAT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1922437 85 -   2157725 TCCACTGCGTCTTTCTCCCAGGTTTCTTTCCATCCTTCGGGGCA-GCGCAGTATACTGATCTGGGAATATGGTTATTCCTGGATAT-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28366304 85 -  71996105 TCCACTGCGCCTTTCTCCCAGGTTTCTTTCCATCCTTCGGGGCA-GCGCAGTATACTGATCTGGGAATATGGTTATTCCTGGAGAT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2056005 85 +   2316924 TCCACTGCGTCTTTCTCCCAGGTTTCTTTCCATCCTTCGGGGCA-GCGCAGTATACTGATCTGGGAATATGGTTATTCCTGGATAT-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1926411 85 -   3067355 TCCACTGCGCCTTTCTCCCAGGTTTCTTTCCATCCTTCGGGGCA-GCGCAGTATACTGATCTGGGAATATGGTTATTCCTGGAGAT-
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            278029 85 -    375362 TCCCGTGCACCTTTCTCCCAGGTTTCTTTCTGTCCTTCTAGGCG-GGGCAGCATACTGATCTGCTAATAGAGTTATTCCTGGAGAT-
i saiBol1.JH378348         C 0 I 1
s cebCap1.NW_016108108v1      275216 85 -    373274 TCCGCTGCGCCTTTCTCCCAGGCTTCTTTCTGTCCTTCTAGGCG-GGGCAGCATACTGATCTGCTAACATAGTTATTCCTGGAGAT-
i cebCap1.NW_016108108v1   C 0 I 1
s aotNan1.NW_018494050v1      208357 85 -    285216 TCCACTGCGCCTTTCTCCCAGGTTTCTTTCAATCCTTCGAGGCG-GGGCAGCATACTGATCTGCTAACATAGTTATTCCTGGAGAT-
i aotNan1.NW_018494050v1   C 0 I 1
s otoGar3.GL873742           1571804 71 -   2232465 TTCACCACGCCTTCTGCCCAGGTATCTT---GTCCT--GGGGCG-GGGCAGGATTCCGATCTAGGAATATGGAGATT----------
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25940967 64 +  26524999 TCCACCGCACCTAATTCCC-------------------GGGGCAGGGGCAGCGAAGGGTTCTGAGGATATTCTT-TTGCTGGTT---
i canFam3.chr35            I 254 C 0
e dasNov3.JH561790             90546 1314 -    302817 I
e calJac3.chr4             171453022  0 - 171630274 C

a score=1727780.000000
s hg38.chr6_GL000254v2_alt    207658 168 +   4827813 TTTATTT-TCTTTCGTTTCCAGCCCACGAAAAGGTGAATTGAATTTTAGTCTCACGGTTTGAAAGGGAGAAAAGAGAGAAAAG-AAAAAATATACTATCTACTTTCTACAGTCTTATTTATTCATTGTACGATACCTACAGATGCCTCTAGAACAACCTCCGAGTATCTT
s panTro5.chr6              29195101 168 + 175400573 TTTATTT-TCTTTCGTTTCCATCCCACGAAAAGGTGAATTGAATTTTAGTCTCACGGTTTGAAAGGGAGAAAAGAGAGAAAAG-AAAAAATATACTATCTACTTTCTACAGTCTTATTTATTCATTGTACGATACCTACAGATGCCTCTAGAACAACCTCCGAGTATCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29429125 168 + 173848474 TTTATTT-TCTTTCGTTTCCATCCCACGAAAAGGTGAATTGAATTTTAGTCTCACGGTTTGAAAGGGAGAAAAGAGAGAAAAG-AAAAAATATACTATCTACTTTCTACAGTCTTATTTATTCATTGTACGATACCTACAGATGCCTCTAGAACAACCTCCGAGTATCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5229815 169 +   6154872 TTTATTT-TCTTTCGTTTCCAGCCCACGAAAAGGTGAATTGAATTTTAGTCTCACGGTTTGAAAGGGAGAAAAGAGAGAAAAGAAAAAAATATACTATCTACTTTCTACAGTCTTATTTATTCATTGTACGATACCTACAGATGCCTCTAAAACAACCTCCGAGTATCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74232174 168 + 122973662 TTTATTT-TCTTTCGTTTCCAGCCCACGAAAAGGTAAGTTGAATTTTAGTCTCACGGTTTGAAAGGGAGAAAAGAGAGAAAAG-AAAAAATAAACTATCTACTTTCTACAGCCTCATTTATTCATTGTACGATACCTACAGATGCCTCTAGAACAACCTCCGAGTATCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29409075 163 + 172585720 ----TTT-TCTTCCGTTTCCAGCCCACGAAAAGATAAATTGAATTTTAGTCTCACGGTTTGAAAGGCAGAAAAGAGAGAAAAG--AAAAATATACTATCTACTTTCTACAGTCTCATTTATTCATCGTACGATACCTACAGATGCCTCTAGAACAACCTCCGAGTATCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29069901 163 - 170955103 ----TTT-TCTTCCGTTTCCAGCCCACGAAAAGATAAATTGAATTTTAGTCTCACGGTTTGAAAGGCAGAAAAGAGAGAAAAG--AAAAATATACTATCTACTTTCTACAGTCTCATTTATTCATCGTACGATACCTACAGATGCCTCTAGAACAACCTCCGAGTATCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2059770 163 -   2996164 ----TTT-TCTTCCGTTTCCAGCCCACGAAAAGATAAATTGAATTTTAGTCTCACGGTTTGAAAGGCAGAAAAGAGAGAAAAG--AAAAATATACTATCTACTTTCTACAGTCTCATTTATTCATCGTACGATACCTACAGATGCCTCTAGAACAACCTCCGAGTATCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1922522 163 -   2157725 ----TTT-TCTTCCGTTTCCAGCCCACGAAAAGATAAATTGAATTTTAGTCTCACAGTTTGAAAGGGAGAAAAGAGAGAAAAG--AAGAATATACTATCTACTTTCTACAGTCTCATTTATTCATCGTACGATACCTACAGATGCCTCTAGAACAACCTCCGAGTATCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28366389 163 -  71996105 ----TTT-TCTTCCGTTTCCAGCCCACGAAAAGATAAATTGAATTTTAGTCTCACAGTTTGAAAGGGAGAAAAGAGAGAAAAG--AAGAATATACTATCTACTTTCTACAGTCTCATTTATTCATCGTACGATACCTACAGATGCCTCTAGAACAACCTCCGAGTATCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2056090 163 +   2316924 ----TTT-TCTTCCGTTTCCAGCCCACGAAAAGATAAATTGAATTTTAGTCTCACAGTTTGAAAGGGAGAAAAGAGAGAAAAG--AAGAATATACTATCTACTTTCTACAGTCTCATTTATTCATCGTACGATACCTACAGATGCCTCTAGAACAACCTCCGAGTATCTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1926496 163 -   3067355 ----TTT-TCTTCCGTTTCCAGCCCACGAAAAGATAAATTGAATTTCAGTCTCGCGGTTTGAAAGGGAGAAAAGAGAGAAAAG--CAAAATATACTATCTACTTTCTACAGTCTCATTTATTCATCGTACGATACCTACAGATGCCTCTAGAACAACCTCCGAGTATCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171453022 158 - 171630274 TTTATTT-GCTTTGGTTTCCAGCCCACGAAAAGGCAAACTGAATTTTGGTCTCACGGTTTGAAAGGGAAAAAAG-----------AAAAATATGCTATCTACTTTCTACAATCTCATTTATTCATTGAACAGTGCATACGTGCGCCTCTGGAACAGCCTCCGAGTATCAT
i calJac3.chr4             C 0 I 52
s saiBol1.JH378348            278115 152 -    375362 TTTATTT-GCTTTCGTTTCCAGCCCACGAAAAGGCAAACTGAATTTTAGTCTCACGGTTTGAAAGGGAGAAA-------------AAAAATATACTATCTACTTTCTACAATCTCATGTATTCATTGAACAATGCATA----CGCCTCTAGAGCAGCCTCCGAGTATCtt
i saiBol1.JH378348         I 1 I 66
s cebCap1.NW_016108108v1      275302 158 -    373274 TTTATTT-GCTTTCGTTTCCAGCCCACGAAAAGGCAAACTGAATTTTAGTCTTACAGTTTGAAAGGGAGAAGAG-----------AAAAATATACTATCTACTTTTTACAATCTCATTTATTCATTGAACAATGCATACATACGCCTCTAGAACAGCCTCCGAGTATCTT
i cebCap1.NW_016108108v1   I 1 I 68
s aotNan1.NW_018494050v1      208443 158 -    285216 TTTATTT-GCTTTCGTTTCCAGCCCACGAAAAGGCAAACTGAATTTTAGTCTCACGGTTTGAAAGGGAGAAAAG-----------AAAAATATACTATCTACTTTCTACAATCTCATTTATTCATTGAACAATGCATACAAACCCCTCTAGAATAGCCTCTAAGTATCtt
i aotNan1.NW_018494050v1   I 1 I 390
s otoGar3.GL873742           1571875 156 -   2232465 TTGATTT-GCTTTCATTTCCAAACCTCGAAAGGGCAATTTGGATTTCAGTCTCACAATTCGAAACGGAGAAAAG-----------CAAAACACAGTATTTCCTTTGTACAGCTTCCTGTGTTCTTTCTACGATATCTGTAGACGCTTCCAAA--AACCTCAGAGTATCTT
i otoGar3.GL873742         C 0 I 69
s canFam3.chr35             25941031 154 +  26524999 TTGATTTAGCCTTCATTTCTGACCCACGCAAAGGCAAGTTGGATTTTCATCTCACGGTTCCAAAGAGAGAAAGG-----------AAAAATAGAACATTTCCTCTTTGTAGCTTCACTTACTC-----AAAGTACCTGCAGACCCTTCCAGGGCGACCCTGCATTGTCTA
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             90546 1314 -    302817 I

a score=248511.000000
s hg38.chr6_GL000254v2_alt    207826 24 +   4827813 GGCACTGCCC--CTCAGTTGTAACCA
s panTro5.chr6              29195269 24 + 175400573 GGCACTGCCC--CTCAGTTGTAACCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29429293 24 + 173848474 GGCACTGCCC--CTCAGTTGTAACCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5229984 24 +   6154872 GGCACTGCCC--CTCAGTTGTAACCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74232342 24 + 122973662 GGCACTGCCC--CTCAGTTGTAACCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29409238 24 + 172585720 GGCACTGCCC--CTCAATTGTAACCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29070064 24 - 170955103 GGCACTGCCC--CTCAGTTGTAACCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2059933 24 -   2996164 GGCACTGCCC--CTCAGTTGTAACCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1922685 24 -   2157725 GGCACTGCCC--CTCAGTTGTAACCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28366552 24 -  71996105 GGCACTGCCC--CTCAGTTGTAACCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2056253 24 +   2316924 GGCACTGCCC--CTCAGTTGTAACCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1926659 24 -   3067355 GGCACTGCCC--CTCAGTTGTAACCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171453232 23 - 171630274 -GCATtgccc--ctcagttgtaacca
i calJac3.chr4             I 52 C 0
s saiBol1.JH378348            278333 24 -    375362 GGCATTGCCC--CTCGGTTGTAACCA
i saiBol1.JH378348         I 66 C 0
s cebCap1.NW_016108108v1      275528 24 -    373274 GGCATTGTCC--CTCGGTTGTAACCA
i cebCap1.NW_016108108v1   I 68 C 0
s otoGar3.GL873742           1572100 24 -   2232465 GGTACTTCAC--CTCTCCAGTAATTA
i otoGar3.GL873742         I 69 I 1
s canFam3.chr35             25941185 26 +  26524999 GGTGCTTTCCTGCTCAGTTATAATTC
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             90546 1314 -    302817 I
e aotNan1.NW_018494050v1      208601 390 -    285216 I

a score=654430.000000
s hg38.chr6_GL000254v2_alt    207850 62 +   4827813 TGGGCTTAAA-TTTTTAAAAtctgtctcccgcattcctccaaaatgccttaagtgcagggctg
s panTro5.chr6              29195293 62 + 175400573 TGGGCTTAAA-TTTTTAAAAtctgtctcccgcattcctccaaaatgccttaagtgcagggctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29429317 62 + 173848474 TGGGCTTAAA-TTTTTAAAAtctgtctcccgcattcctccaaaatgccttaagtgcagggctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5230008 62 +   6154872 TGGGCTTAAA-TTTTTAAAAtctgtctcccgcattcctccaaaatgccttaagtgcagggctg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74232366 62 + 122973662 TGGGCTTGAA-TTTTTAAAAtctgtctcccgcattcctccaaaatgccttaagtgcagggctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29409262 62 + 172585720 TGGGCTTGAA-TTTTTAAAAtctgtctcctgcattcctgcaaaatgccttaagtgcaggactg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29070088 62 - 170955103 TGGGCTTGAA-TTTTTAAAAtctgtctcctgcattcctgcaaaatgccttaagtgcaggactg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2059957 62 -   2996164 TGGGCTTGAA-TTTTTAAAAtctgtctcctgcattcctgcaaaatgccttaagtgcaggactg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1922709 62 -   2157725 TGGGCTTGAA-TTTTTAAAAtctgtctcccgcattcctgcaaaatgccttaagtgcaggactg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28366576 62 -  71996105 TGGGCTTGAA-TTTTTAAAAtctgcctcccgcattcctgcaaaatgccttaagtgcaggactg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2056277 62 +   2316924 TGGGCTTGAA-TTTTTAAAAtctgtctcctgcattcctgcaaaatgccttaagtgcaggactg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1926683 62 -   3067355 TTGGCTTGAA-TTTTTAAAAtttgtctcccgcattcctgcaaaatgcctgaagtgcaggactg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171453255 62 - 171630274 tgtgcttgaa-ttttttaaatctgtctctcgcactccttcaaaatgacttaagggcagggctg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            278357 63 -    375362 TGGGCTTGAATTTTTTTAAATCTGTCTCTCGCAGTCCTCCAAAATGActtaagggcaggactg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      275552 62 -    373274 TGGACTTGAA-TTTTTAAAAtctgtctctcccactcctgaaaaatgacttaagggctggactg
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      208991 62 -    285216 TGGGCTTGAA-TTTTTAAAatctgtctctcgcacttctccaaaatgacttaagggcaggactg
i aotNan1.NW_018494050v1   I 390 C 0
s otoGar3.GL873742           1572125 58 -   2232465 GGGGCTAGAA-CTTTGAAAATCTGTCCTC----TTGCTCCAAAATGCCTGAAGTGCAGGACTG
i otoGar3.GL873742         I 1 I 98
s canFam3.chr35             25941211 56 +  26524999 TGGGTTTCAA-ACCCGAAGATCTGTGGCCC----CACTCCAAAAAGTACCAAGTGCCCGCC--
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             90546 1314 -    302817 I

a score=1337366.000000
s hg38.chr6_GL000254v2_alt    207912 143 +   4827813 agtctcagtagtctttgatagcccacggtctgctactttgtagaagctcaaccaatgcttgttgCatgaatgcataaatgaaaggatgagtgaatgaatgaatgaatgaatgaatgaatACTCAGTGGGACAGCCCAGC-TTAG
s panTro5.chr6              29195355 143 + 175400573 agtctcagtagtctttgatagcccacggtctgctactttgtagaagctcaaccaatgcttgttgCatgaatgcataaatgaaaggatgagtgaatgaatgaatgaatgaatgaatgaatACTCAGTGGGATAGCCCAGC-TTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29429379 143 + 173848474 agtctcagtagtctttgatagcccacggtctgctactttgtagaagctcaaccaatgcttgttgCatgaatgcataaatgaaaggatgagtgaatgaatgaatgaatgaatgaatgaatACTCAGTGGGACAGCCCAGC-TTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5230070 139 +   6154872 agtctcagtagtctttgatagcccacggtctgctactttgtagaagctcaaccaatgcttgttgCatgaatgcataaatgaaaggatgag----tgaatgaatgaatgaatgaatgaatACTCAGTGGGACAGCCCAGC-TTAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74232428 139 + 122973662 agtctcagtcctctttgatagcccacggtctgctgctttgtagaagctcaaccaatgcttgttgCatgaatgcataaatgaaagcatgag----tgaatgaatgaatgaatgaatgaatgCTCAGTGGGACAGCCCAGC-TTAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29409324 139 + 172585720 agtctcactcctctttgatagcccacggtctgctactttgtagaagctcaatcaatgtttgttgCatgaatgcataaatgaaagaatgag----tgaatgaatgaacgaatgaatgaatACTCAGTGGGACAGCCCAAC-TTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29070150 139 - 170955103 agtctcactcctctttgatagcccacggtctgctactttgtagaagctcaatcaatgtttgttgCatgaatgcataaatgaaagaatgag----tgaatgaatgaacgaatgaatgaatACTCAGTGGGACAGCCCAAC-TTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2060019 139 -   2996164 agtctcactcctctttgatagcccacggtctgctactttgtagaagctcaatcaatgtttgttgCatgaatgcataaatgaaagaatgag----tgaatgaatgaacgaatgaatgaatACTCAGTGGGACAGCCCAAC-TTAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1922771 139 -   2157725 agtctcactcctctttgatagcccacggtctgctactttgtagaagctcaatcaatgtttgttgcatgaatacatAaatgaaagaatgag----tgaatgaatgaacgaatgaatgaatACTCAGTGGGACAGCCCAGC-TTAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28366638 139 -  71996105 agtctcactcctctttgataacccacggtctgctactttgtagaagctcaatcaatgtttgctgcatgaatacatAaatgaaagaatgag----tgaatgaatgaacgaatgaatgaatACTCAGTGGGACAGCCCAAC-TTAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2056339 139 +   2316924 agtctcactcctctttgatagcccacggtctgctactttgtagaagctcaatcaatgtttgttgcatgaatacatAaatgaaagaatgag----tgaatgaatgaacgaatgaatgaatACTCAGTGGGACAGCCCAGC-TTAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1926745 139 -   3067355 agtctcactcctctttgatagtccacggtctgctactttgtagacgctcaatcaatgtttgttgcgtgagtgcatAaatgaaagaatgag----tgaatgaatgaacgaatgaatgaatACTCAGTGGGACAGCCCAAC-TTAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171453317 127 - 171630274 agtctcactcctctttgacagcccacggtctggtacttagtagaagctcaatcaatgcgtgttgCat--------aaatgaaagaatgaa----tgaatgaatgaatgcatgaatg----CTCATTGGGACAGTGCAGC-TTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            278420 135 -    375362 agtctcacccctctttgatagcccacgttctggtacttaggagaagctcaatcaatgcttgctgcataaatgCAGAaatgaaagaaagag----tgaatgaatgaatgcatgaatg----CTCATTGCGACAGCCCACC-TTAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      275614 135 -    373274 agtctcactcctctttgacagcccaaggtctggtacttagtaaaagctcaatcaatgcttgttgcataattgcatAaatgaaagaatgag----tgaatgagtgaatgcatgaatg----CTCAGTGGGACAGCCCAGC-TTAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      209053 127 -    285216 agtctcactcctttttgacagcccacggtctggtacttagtagaagctcgatcaatgcttgttgcat--------Aaatgaaagaatgaa----tgaatgaatgaatgcatgaatg----CTCATTCGGACAACCCAGC-TTAG
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25941267 119 +  26524999 AGTCCCTTTCCTCTTTGACACCACA-AGTCTGGGAC-TAATGGAAGCTTAACCAATGCGTGTTTCTTGAGGGCACAGATAAAAG---GAG----TGTGTGAATA----------------TTCAGTGGGATAGCCCAGTGTTAG
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             90546 1314 -    302817 I
e otoGar3.GL873742           1572183  98 -   2232465 I

a score=756755.000000
s hg38.chr6_GL000254v2_alt    208055 74 +   4827813 ACTTTTGGGAGACTTTAGACTTCTTTT----TTGCCTTCACTTGCTAGGCTAAATTTTACAAGTTCAAAAGGGAATAA
s panTro5.chr6              29195498 74 + 175400573 ACTTTTGGGAGACTTTAGACTTCTTTT----TTGCCTTCACTTGCTAGGCTAAATTTTACAAGTTCAAAAGGGAATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29429522 74 + 173848474 ACTTTTGGGAGACTTTAGACTTCTTTT----TTGCCTTCACTTGCTAGGCTAAATTTTACAAGTTCAAAAGGGAATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5230209 78 +   6154872 ACTTTTGGGAGACTTTAGACTTCTTTTTTGCTTGCCTTCACTCGCTAGGCTAAATTTTACAAGTTCAAAAGGGAATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74232567 74 + 122973662 ACTTTTGGGAGACTTTAGACTTCTTTT----TTGCCTTCACTCGCTAGGCTAAATTTTACAAGTTCAAAAGGGAATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29409463 74 + 172585720 ACTTTTGGGAGACTTTAGACTTCTTTT----TTGCCTTCATTCGCTAGGCTAAATTTTACAAGTTCAAAAGGGAActc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29070289 74 - 170955103 ACTTTTGGGAGACTTTAGACTTCTTTT----TTGCCTTCATTCGCTAGGCTAAATTTTACAAGTTCAAAAGGGAActc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2060158 74 -   2996164 ACTTTTGGGAGACTTTAGACTTCTTTT----TTGCCTTCATTCGCTAGGCTAAATTTTACAAGTTCAAAAGGGAActc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1922910 71 -   2157725 ACTTTTGGAAGACTTTAGACTTCTTTT----TTGCCTTCATTCGCTAGGCTAAATTTTAAAAGTTCAAAAGGGAA---
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28366777 71 -  71996105 ACTTTTGGAAGACTTTAGACTTCTTTT----TTGCCTTCACTCGCTAGGCTAAATTTTAAAAGTTCAAAAGGGAA---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2056478 71 +   2316924 ACTTTTGGAAGACTTTAGACTTCCTTT----TTGCCTTCATTCGCTAGGCTAAATTTTAAAAGTTCAAAAGGGAA---
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1926884 74 -   3067355 ACTTTTGGGAGACTTTAGACTTCTTTT----TTGCCTTCATTCGCTAGGCTAAATTTTACAAGTTCAAAAGGGAActc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171453444 74 - 171630274 ATTTTTGGAAGACTTTAGACTTCTTTT----TTGCCTTCTCTTGCTAGGCTAAATTTTACAGGTTCAAGAGAGGATAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            278555 74 -    375362 ACTTTTGGGAGACTTTAGACTTCTTTT----TTGCCTTCTCTTGATAGGCTAAATTTTACAGGTTCAAGAGAGGGTAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      275749 74 -    373274 ACTTTTGGGAGACTTTAGACTTCTTTT----TTGCCTTCTCTTGCTAGGCTAAATTTTACAGGTTCAAGAGAGGGTAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      209180 73 -    285216 ACTTTTGGGAGACTTTAGACTTCTTTT----TTGCCTTCTCTTGCTAGGCTAAATTTTAAAGGTTC-GGAGAGGATAA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1572281 72 -   2232465 ATTTGCTGCAGACTTCAGACATCTTT-----TTGCCTTCACTCAATAGGCTAAATTTGATGGGCT-AAAGGGAGATAA
i otoGar3.GL873742         I 98 C 0
s canFam3.chr35             25941386 65 +  26524999 ACCTTTGGGAG------GGTTTCCTTT----T--CCTTCCTTCCTTGGGCTAAATCTGACATGGGT-GAGGGGGATGG
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             90546 1314 -    302817 I

a score=2482390.000000
s hg38.chr6_GL000254v2_alt    208129 219 +   4827813 TTATTTCTCCTCC------------TCCTCCT-----------------ATCTTCTTTTG-C---CTTTCCAGGTCCCAGCTCCCAGGTGGACATCTTAGCGTCCAGATGACCCAACATATAGGTGTCCTTTAGTATGGATGACCAAACTAGGATGTTATAGTGCTGGATGTAGTAATTCATTTTTT--CAAATCTTAACTTTATTAAGATAACATGGTTATTTATCTAGTAATTGTGAGAACAACATATAACA
s panTro5.chr6              29195572 219 + 175400573 TTATTTCTCCTCC------------TCCTCCT-----------------ATCTTCTTTTG-C---CTTTCCAGGTCCCAGCTCCCAGGTGGACATCTTAGCGTCCAGATGACCCCACATATAGGTGTCCTTTAGTATGGATGACCAAACTAGGATGTTATAGTGCTGGATGTAGTCATTCATTTTTT--CAAATCTTAACTTTATTAAGATAACATGGTTATTTATCTAGTAATTGTGAGAACAACATATAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29429596 219 + 173848474 TTATTTCTCCTCC------------TCCTCCT-----------------ATCTTCTTTTG-C---CTTTCCAGGTCCCAGCTCCCAGGTGGACATCTTAGCGTCCAGATGACCCCACATATAGGTGTCCTTTAGTATGGATGACCAAACTAGGATGTTATAGTGCTGGATGTGGTCATTCATTTTTT--CAAATCTTAACTTTATTAAGATAACATGGTTATTTATCTAGTAATTGTGAGAACAACATATAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5230287 219 +   6154872 TTATTTCTCCTCC------------TCCTCCT-----------------ATCTTCTTTTG-C---CTTTCCAGGTCCCAGCTCCCAGGTGGACATCTTAGCGTCCAGATGACCCCACATATAGGTGTCCTTTAGTATGGATGACCAAACTAGGATGTTATAGTGCTGGATGTAGTCATTCATTTTTT--CAAATCTTAACTTTATTAAGATAACATGGTTATTTATCTAGTAATTGTGAGAACAACATATAACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74232641 219 + 122973662 TTATTTCTCTTCC------------TCTTCCT-----------------ATCTTCTTTTG-C---CTTTCCAGGTCCCAGCTCCCACGTGGACATCTTAGCGTCCAGATGACCCTACAAATAGGTGTCCTTTAGTATGGATGACCAAACGAGGATGTTATAGTGCTGGACGTAGTCATTCATTTTTT--CAAATCTTAACTTTATTCAGATAACATGGTTATTTATCTAGTAATTGTGAGTACAACATATAGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29409537 224 + 172585720 ctcctcctcctcct-------atcttcctcct-----------------ATCTTCTTTCG-C---CTTTCCAGGTCCCGGCTCCCAGGTGGACATCTTAGCGTCCAGATGGCCCCACAAATAGGTGTCCTTTAGTATGGATGACCAAACGAGGATGTAATAGTGCTGGACGTAGTCATTTATTTTTT--CAAATCTTAACTTTATTAAGATAACATGGTTCTTTACCTAGTAACTGTAAGAACAACATAAAACA
i rheMac8.chr4             C 0 I 9
s macFas5.chr4              29070363 220 - 170955103 ctcctcctcctcct-------atcttcctcct-----------------ATCTTCTTTCG-C---CTTTCCAGGTCCCGGCTCCCAGGTGGACATCTTAGCGTCCAGATGGCCCCACAAATAGGTGTCCTTTAGTATGGATGACCAAACGAGGATGTAATAGTGCTGGACGTAGTCATTTATTTTTT--CAAATCTTAACTTTATTAAGATAACATGGTTCTTTACCTAGTAACTGTAAGAACAACATAA----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2060232 224 -   2996164 ctcctcctcctcct-------atcttcctcct-----------------ATCTTCTTTCG-C---CTTTCCAGGTCCCGGCTCCCAGGTGGACATCTTAGCGTCCAGATGGCCCCACAAATAGGTGTCCTTTAGTATGGATGACCAAACGAGGATGTAATAGTGCTGGACGTAGTCATTTATTTTTT--CAAATCTTAACTTTATTAAGATAACATGGTTCTTTACCTAGTAACTGTAAGAACAACATAAAACA
i macNem1.NW_012011356v1   C 0 I 9
s cerAty1.NW_012001495v1     1922981 224 -   2157725 ctcctcctcctcct-------atcttcctcct-----------------ATCTTCTTTCG-C---CTTTCCAGGTCCCGGCTCCCAGGTGGACATCTTAGCGTCCAGATGGCCCCACAAATTGGTGTCCTTTAGTATGGATGACCAAACGAGGATGTTACAATGCTGGACGTAGTCATTTATTTTTT--CAAATCTTAACTTTATTAAGATAACATGGTTGTTTACCTAGTAACTGTAAGAACAACATAAAATA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28366848 224 -  71996105 CCCCTCCTCCTCCT-------ATCTTCCTCCT-----------------ATCTTCTTTCG-C---CTTTCCAGGTCCCGGCTCCCAGGTGGACATCTTAGCGTCCAGATGGCCCCACAAATTGGTGTCCTTTAGTATGGATGACCAAATGAGGATGTTATAGTGCTGGACGTAGTCGTTTATTTTTT--CAAATCTTAACTTTATTAAAATAACATGGTTATTTACCTAGTAACTGTAAGAACAACATAAAACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2056549 224 +   2316924 ctcctcctcctcct-------atcttcctcct-----------------ATCTTCTTTCG-C---CTTTGCAGGTCCCGGCTCCCAGGTGGACATCTTAGCGTCCAGATGGCCCCACAAATTGGTGTCCTTTAGTATGGATGACCAAACGAGGATGTTACAACGCTGGACGTAGTCATTTATTTTTT--CAAATCTTAACTTTATTAAGATAACATGGTTGTTTACCTAGTAACTGTAAGAACAACATAAAATA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1926958 223 -   3067355 ctcctcctcctcct-------atcttcctcct-----------------cTCTTCTTTCA-T---CTTTCGAGGTCCCGGCTCCCAGGTGGACATCTTAGCGTCCAGATGGCCCCACAAATAGGTGTCCTTTAGTGTGGATGACC-AACGAGGATGTTATAGTGCTGGACGTAGTCATTTATTTTTT--CAAATCTTAACTTTATTAAGATAACATGGTTATTTATCTAGTAACTGTAAGAACAACATAAAACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171453518 218 - 171630274 TTATTTCTCCTCC------------TCTTCCT-----------------ATCTTGTTTTG-C---CTTTCCAGGTCCCAGCTCCCAGGTGGGCATCTTAGTGTCCAGATGGCCCCACAAATCAGTGTCCTTTAGAATGGATGACCAAATGAGGATATTACAGTGCCAGATGTAGTAATTTATTTTTT--CAAATCTTAGCTTTATTAAGATAACGTGGTTATTTATTTAGTAACTGTAAGAACAACATATAAC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            278629 219 -    375362 TTATTTCTCCTCC------------TCTTTCT-----------------GTCTTGTTTTG-C---CTTTCCAGGTCCCAGCTCCCGGGTGGGCATCTTAGTGCCCAGATGGCCCCACAAATGGGTGTCCTTTAGTATGGATGACCAAACAGGGATTTTGCAGTGCCGGATGTAGTCATTTATTTTTT--CAAATCTTAGCTTTATTAAGATAACATGGTTATGTATCTAGTAACTGTAAGAACAACACGTAACA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      275823 218 -    373274 TTATTTCT-CTCC------------TCTTCCT-----------------ATCTTGTTTTG-C---CTTTCCAGGTCTCAGCTCCCAAGTGGGCCTCTTAGTGTCCAAATGGCCCCACAAGTAGGTGTCCTTTAGTATGGATGACCAAACGAGGATTTTACAGTGCCGGATGTAGTCATTTATTTTTT--CAAATCTTAACTTTATTAAGATAACATGGTTATTTATCTAGTAACTGTAAGAACAACATATAACA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      209253 216 -    285216 TTATTTCTCCTCC------------TCTTCCT-----------------ACCTTGTTTTG-C---CTTTCCAGGTCCCAGCTCCCAGGTGGGCATCTTAGTGTCCAGATGGCCCCACAAATAGGTGTCCTTTAGTGTGGATGACCAAACGAGGATATTACAGTGCCGGATGTAGTCATTTATTTTTT--CAAATCTTGGCT---TTAAGATAACATGGTTATTTATCTAGTAACTGTAGGAACGACATGTAACA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1572353 229 -   2232465 TttcttcttctccttcttctacccctcctccttcttttactccttcatcatcttcttTTA-C---CTTTCTGGGTCCCAGCTCCCAGGTGGACATTTCAGTGTAAAAGTGGCCTCACA-ACAGATA-----AAGTGTGAATGA-CAATCAAGGATGTCATAGTGCTGGACATAGTCATTTATTTTTT--CAAATC---------TTAAGATAACA---TCATTTATCTAGTAACTGTGAAAACAATATATAACA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25941451 227 +  26524999 CTGTTGCATCTTTT-------GTTTTGCTTTT-----------------GTTTGTTTTTGTC---CTTTCTGGGTCACAGCTCCCAGGTGGACATTCTAGTGTTCAAATGGAACCATAAATAGGTGTCCCCCAGTGTGGATGAACACAAGTCGACACCGTAGTGCTGCGCATACTCACCTATTTTTTTCCAAATCTTAACTTCATCAGGATAACATGATTGTTTGCCTAGTAAGTGTAAGAACAACACATAACA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             91860 181 -    302817 ttctctctttctc------------tctttct-----------------ttctttcttCG-CTCACCTTCCAGGCCCCA--------------------------------------AAATAGGTGTCCTCATGTGTGGATGACCAAGAGAGGCTGGCACACTGCTGGACGTAGTAATTTTTTTCCC-CCAGATCTTAATCTTATTAGGATAACATGA----GTATCCTGTAACTGTAAGAACAACATATAACA
i dasNov3.JH561790         I 1314 C 0

a score=305371.000000
s hg38.chr6_GL000254v2_alt    208348 41 +   4827813 AATAGACCACATATATACGTAGCGTGTCTGGAAGAAATACT
s panTro5.chr6              29195791 41 + 175400573 AATAGACCACATATATACGTAGCGTGTCTGGAAGAAATACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29429815 41 + 173848474 AATAGACCACATATATACGTAGCGTGTCTGGAAGAAATACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5230506 41 +   6154872 AATAGACCACATATATACGTAGCGTGTCTGGAAGAAATACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74232860 41 + 122973662 AATAGACCTCATATATACGTAGCATGTCTGGAAGAAATACT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29070583 13 - 170955103 AACAGACCACATA----------------------------
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1923205 41 -   2157725 AATAGACCACATATATACGTAGCTTGTCTGGAAGAAATACT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28367072 41 -  71996105 AATAGACCACATACATACGTGGCTTGTCTGGAAGAAATACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2056773 41 +   2316924 AATAGACCACATATATACGTAGCTTGTCTGGAAGAAATACT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1927181 41 -   3067355 AATAGACCACATATATACGTAGCATGTCTGGAAGAAATACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171453736 35 - 171630274 ---AGACCACATATATACGTAGTTTGTCTGGAAGAAAT---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            278848 38 -    375362 AATAGACCACATATATACGTAGCTTGTCTGAAAGAAAT---
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      276041 41 -    373274 AATAGACCACATATATATGTAGCTTGTCTGGAGGAAATACT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      209469 41 -    285216 AATAGACCACATGTATACGTAGCTTGTCTGGAAGAAATACT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1572582 37 -   2232465 AAAAGACCATATAT----GTAGTAAGATCAGAAGAAATACT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25941678 37 +  26524999 AAGAGATCATATATA----CAGCATGGCTGGAAGCCACACC
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             92041 37 -    302817 AAGAGACCATATAT----GGTGTATGATTGGAAGAAATGCT
i dasNov3.JH561790         C 0 C 0
e macNem1.NW_012011356v1     2060456  9 -   2996164 I
e rheMac8.chr4              29409761  9 + 172585720 I

a score=544540.000000
s hg38.chr6_GL000254v2_alt    208389 43 +   4827813 CAGATATAAATTACTACTTTAGTCAATCTTAATATTAATTATT
s panTro5.chr6              29195832 43 + 175400573 CAGATATAAATTACTACTTTAGTCAATCTTAATATTAATTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29429856 43 + 173848474 CAGATATAAATTACTACTTTAGTCAATCTTAATATTAATTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5230547 43 +   6154872 CAGATATAAATTACTACTTTAGTCAATCTTAATATTAATTATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74232901 43 + 122973662 CAGATATAAATTACTACTTTAGTCAATCTTAATATTAATTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29409770 43 + 172585720 CAGGTATAAATTACTACTTTAGTCAATCTTAATATTAATTATT
i rheMac8.chr4             I 9 I 312
s macFas5.chr4              29070596 43 - 170955103 CAGGTATAAATTACTACTTTAGTCAATCTTAATATTAATTATT
i macFas5.chr4             C 0 I 316
s macNem1.NW_012011356v1     2060465 43 -   2996164 CAGGTATAAATTACTACTTTAGTCAATCTTAATATTAATTATT
i macNem1.NW_012011356v1   I 9 I 313
s cerAty1.NW_012001495v1     1923246 43 -   2157725 CAGGTATAAATTACTACTTCAGTCAATCTTAATATTAGTTATT
i cerAty1.NW_012001495v1   C 0 I 314
s chlSab2.chr17             28367113 43 -  71996105 CAGGTATAAGTTACTACTTTAGTCAATCTTAATATTAATTATT
i chlSab2.chr17            C 0 I 278
s manLeu1.NW_012104165v1     2056814 43 +   2316924 CAGGTATAAATTACTACTTCAGTCAATCTTAATATTAGTTATT
i manLeu1.NW_012104165v1   C 0 I 313
s colAng1.NW_012115566v1     1927222 43 -   3067355 CAGGTATAAATTACTACTTTAGTCAATCTTAATCTTAATTATT
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chr4             171453771 42 - 171630274 -AGGTATAAATTACTACTTTAGTCAATCTTAGTATTAATTATT
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            278886 42 -    375362 -AGGTATAAATTACTACTTTAGTCAATCTTAGTGTTAATTATT
i saiBol1.JH378348         C 0 I 1
s cebCap1.NW_016108108v1      276082 43 -    373274 CAGGTATAAATTACTACTTTAGTCAATCTTAGTATTAATTATT
i cebCap1.NW_016108108v1   C 0 I 1
s aotNan1.NW_018494050v1      209510 43 -    285216 CAGGTAtaaattactactttagtcaatcttagtgttaattatg
i aotNan1.NW_018494050v1   C 0 I 1
s otoGar3.GL873742           1572619 43 -   2232465 CAGGCATAAATTATTACTTTAGTCAATACAGATATAAATTATT
i otoGar3.GL873742         C 0 I 1
s canFam3.chr35             25941715 41 +  26524999 CAAGTATAAATTGCTCCTC--ATTAAGCTAAATATGAAGTCTT
i canFam3.chr35            C 0 I 1
s dasNov3.JH561790             92078 43 -    302817 TGGGTATCGACCACTGCTTTAGTTAATCTAAATGGTAATCATT
i dasNov3.JH561790         C 0 C 0

a score=-2210.000000
s hg38.chr6_GL000254v2_alt    208432 1 +   4827813 -T
s panTro5.chr6              29195875 1 + 175400573 -T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29429899 1 + 173848474 -T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5230590 1 +   6154872 -T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74232944 1 + 122973662 -G
i nomLeu3.chr1a            C 0 C 0
s dasNov3.JH561790             92121 1 -    302817 G-
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25941756 1 +  26524999 I
e saiBol1.JH378348            278928 1 -    375362 I
e otoGar3.GL873742           1572662 1 -   2232465 I
e aotNan1.NW_018494050v1      209553 1 -    285216 I
e cebCap1.NW_016108108v1      276125 1 -    373274 I
e calJac3.chr4             171453813 1 - 171630274 I
e colAng1.NW_012115566v1     1927265 1 -   3067355 I
e manLeu1.NW_012104165v1     2056857 313 +   2316924 I
e chlSab2.chr17             28367156 278 -  71996105 I
e cerAty1.NW_012001495v1     1923289 314 -   2157725 I
e macNem1.NW_012011356v1     2060508 313 -   2996164 I
e macFas5.chr4              29070639 316 - 170955103 I
e rheMac8.chr4              29409813 312 + 172585720 I

a score=103073.000000
s hg38.chr6_GL000254v2_alt    208433 10 +   4827813 GTCAACTATG
s panTro5.chr6              29195876 10 + 175400573 GTCAACTATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29429900 10 + 173848474 GTCAACTGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5230591 10 +   6154872 GTCAACTATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74232945 10 + 122973662 GTCAATTATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29410125 10 + 172585720 GTCAATTATG
i rheMac8.chr4             I 312 C 0
s macFas5.chr4              29070955 10 - 170955103 GTCAATTATG
i macFas5.chr4             I 316 C 0
s macNem1.NW_012011356v1     2060821 10 -   2996164 GTCAATTATG
i macNem1.NW_012011356v1   I 313 C 0
s cerAty1.NW_012001495v1     1923603 10 -   2157725 GTCAATTATG
i cerAty1.NW_012001495v1   I 314 C 0
s chlSab2.chr17             28367434 10 -  71996105 GTCAATTATG
i chlSab2.chr17            I 278 C 0
s manLeu1.NW_012104165v1     2057170 10 +   2316924 GTCAATTATG
i manLeu1.NW_012104165v1   I 313 C 0
s colAng1.NW_012115566v1     1927266 10 -   3067355 GTCAATTATG
i colAng1.NW_012115566v1   I 1 I 316
s calJac3.chr4             171453814 10 - 171630274 GTCATTTATG
i calJac3.chr4             I 1 C 0
s saiBol1.JH378348            278929 10 -    375362 GTCATTTATG
i saiBol1.JH378348         I 1 C 0
s cebCap1.NW_016108108v1      276126 10 -    373274 GTCATTTATG
i cebCap1.NW_016108108v1   I 1 C 0
s aotNan1.NW_018494050v1      209554 10 -    285216 gtcatttatg
i aotNan1.NW_018494050v1   I 1 C 0
s otoGar3.GL873742           1572663 10 -   2232465 GCAATCTATG
i otoGar3.GL873742         I 1 C 0
s canFam3.chr35             25941757 10 +  26524999 ACCACCTGTT
i canFam3.chr35            I 1 C 0
s dasNov3.JH561790             92122 10 -    302817 CCCAGGCATG
i dasNov3.JH561790         C 0 C 0

a score=1893149.000000
s hg38.chr6_GL000254v2_alt    208443 163 +   4827813 CTTAATGTGCCTCT-CT-A-GTCTCTCAAGACTAAATTGCTAAGGAACCCTGGAATCA-TTTGCTGGCATTCAT-CCTT----------T---------------CAAGCAAGGTGCCTGTTACAAAATATCTGCTCAATTAGTAT-----GTATTGGATACATCTTTTGGAAGGTGAGGAAGGAAGCAGTGAAATT-A
s panTro5.chr6              29195886 163 + 175400573 CTTAATGTGCCTCT-CT-A-GTCTCTCAAGACTAAATTGCTAAGGAACCCTGGAATCA-TTTGCTGGCATTCAT-CCTT----------T---------------CAAGCAAGGTGCCTGTTACAAAATATCTGCTCAATTAGTAT-----GTATTGGATACATCTTTTGGAAGGTGAGGAAGGAAGCAGTGAAATT-A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29429910 163 + 173848474 CTTAATGTGCCTCT-CT-A-GTCTCTCAAGACTAAATTGCTAAGGAACCCTGGAATCA-TTTGCTGGCATTCAT-CCTT----------T---------------CAAGCAAGGTGCCTGTTACAAAATATCTGCTCAATTAGTAT-----GTATTGGATACATCTTTTGGAAGGTGAGGAAGGAAGCAGTGAAATT-A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5230601 163 +   6154872 CTCAATGTGCCTCT-CT-A-GTCTCTCAAGACTAAATTGCTAAGGAACCCTGGAATCA-TTTGCTGGCATTCAT-CCTT----------T---------------CAAGCAACGTGCCTGTTACAAAATATCTGCTCAATTAGTAT-----GTATTGGATACATCTTTTGGAAGGTGAGGAAGGAAGCAGTGAAATT-A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74232955 178 + 122973662 CTTAATGTGCCTGT-CT-A-GTCTCTCAAGACTGAATTGCTAAGGAACCCTGGAATCA-TTTGCTGGCATTCAT-CCTT----------TTGTTTTATCTCCAACCAAGCAAGGTGCCTGTTACAAAATATCTGCTCAATTAGTAT-----GTATTGGATACATCTTTTGGAAGGTGAGGAAAGAAGCAGTGAAATT-A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29410135 178 + 172585720 CTTAATGTGACTCT-CT-A-GTCTCTCAAGACTGAATTGCTAAGAAACCCTGGAATCA-TTTGCTGGTATTCAT-CCTT----------TCATTGTATCTCCAACCAAGCAAGATGCCTGTTACAAAATATCTGCTCAATTAGTAT-----GTATTGGATACATCTTTTGGAAGGTGAGGAAGGAAGCAGTGAAATT-A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29070965 178 - 170955103 CTTAATGAGCCTCT-CT-A-GTCTCTCAAGACTGAATTGCTAAGAAACCCTGGAATCA-TTTGCTGGTATTCAT-CCTT----------TCATTGTATCTCCAACCAAGCAAGGTGCCTGTTACAAAATATCTGCTCAATTAGTAT-----GTATTGGATACATCTTTTGGAAGGTGAGGAAGGAAGCAGTGAAATT-A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2060831 178 -   2996164 CTTAATGTGCCTCT-CT-A-GTCTCTCAAGACTGAATTGCTAAGAAACCCTGGAATCA-TTTGCTGGTATTCAT-CCTT----------TCATTGTATCTCCAACCAAGCAAGGTGCCTGTTACAAAATATCTGCTCAATTAGTAT-----GTATTGGATACATCTTTTGGAAGGTGAGGAAGGAAGCAGTGAAATT-A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1923613 182 -   2157725 CTTAATGTGCTTCT-CT-A-GTCTCTCAAGACTGAATTGCTAAGAAACCCTGGAATCA-TTTGCTGGTATTCAT-CCTT----------TCGTTGTATCTCCAACCAAGCAAGGTACCTGTTACAAAATATCTGCTCAATTAGTATGTA-GGTATTGGATACATCTTTTGGAAGGTGAGGAAGGAAGCAGTGAAATT-A
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28367444 182 -  71996105 CTTAATGTGCCTCT-CT-A-GTCTCTCAAGACTGAATTGCTAAGAAACCCTGGAATCA-TTTGCTGGTATTCAT-CCTT----------TCGTTGTATCTCCAACCAAGCAAGGTACCTGTTACAAAATATCTGCTCAATTAGTATGTA-TGTATTGGACACATCTTTTGGAAGGTGAGGAAGGAAGCAGTGAAATT-A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2057180 182 +   2316924 CTTAATGTGCTTCT-CT-A-GTCTCTCAAGACTGAATTGCTAAGAAACCCTGGAATCA-TTTGCTGGTATTCAT-CCTT----------TCGTTGTATCTCCAACCAAGCAAGGTACCTGTTACAAAATATCTGCTCAATTAGTATGTA-TGTATTGGATACATCTTTTGGAAGATGAGGAAGGAAGCAGTGAAATT-A
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1927592 178 -   3067355 CTTAATGTGCCTCT-CT-A-GTCTCTCAAGACTGAATTGCTAAGAAACCCTGGAATCA-TTTGCTGGTATTCAT-CCTT----------TCgttgtatctccaaccaagcaaggtgcctgttacaaaatatctgctcaattagtat-----gtattggatacatgTTTTGGAAGGTGAGGAAGGAAGCAGTGAAATT-A
i colAng1.NW_012115566v1   I 316 C 0
s calJac3.chr4             171453824 177 - 171630274 CTTCACGTGTCTCT-CT-A-GTCTCCCAAGTCTGAATTGCTAAGGAAGCCTTGAATAT-TTTGCTGGCATTCAT-CCTT----------TTGTTTTATCTCCAGTCAAGCAATGTGCCACTTACAAAGTATTGGCTCAATTAGTAT-----GTATTGGATACATCTTTGGGAAGGTGAGGAAGGAAGAAGTGAAATT--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            278939 162 -    375362 CTTCATGTGTCTCT-CT-A-GTCTCCCAAGTCTGAATTGCTCAGGAAGCCTTTAATCT-TTTGCTGGCATTCAT-CCTT----------TTGTTGTATCTCCAATCAAGCAAGGTGCCTGTTACAAA--------------AGTAT-----GTATTGGATACATCTTTTGGAAGGTGACGAAGGAAGCAGTGAAAT---
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      276136 178 -    373274 CTTCACGTGTCTCT-CT-A-GTCTCCCAAGTCTGAATTGCTGAGGGAGCCTTGAATCT-TTTGCTGGCATTCAT-CCTT----------TTgttgtatctccaatcaagcaaggtgcctgttacaaagtatctgctcaattagtat-----gtgttggatacatCTTTTGGAAGGTGAGGAAGGAAGCAGTGAAATTA-
i cebCap1.NW_016108108v1   C 0 I 275
s aotNan1.NW_018494050v1      209564 174 -    285216 cttcacgtgtctct-ct-a-gtctcccaagtctgaattgctaaggaagccttgaatct-tttgctggcattcat-cctt----------ttgttgtgtctccaatcaagcaaggtgcctgttacaaagtatcagctcaattagtat-----gtattggataca---tttgGAAGATGAGGAAGGAAGCAGTGAAATT--
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1572673 195 -   2232465 CTTTATGTGTCTCTGGT-A-CTCTCCCAAGGCTGGATTGCTAAGAACCTCTTGAATTATTTTTCTTGCATTCAT-TTTTGTTGTTGTTGTTGTTATATCTCTGACTAAGAAAGGTGCCTATCACAAAATTCCTGCTTAATAAAGATGGATTGAATTGAATATATTTTGAGAGAGTTGAGGAAGAAAACAATTAAATT-C
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25941767 155 +  26524999 CTCAATATGCCTCA-GTGA-GTCTCCCAAGGCTGAATTGCGAAGGCATCCCTGAATCA-TTTTCTGCAACTCAT-CGTT----------TTGCTAGATCTCCAACCAAGCAAGGTACCTGTCACTAAATAGCTGCCCAAGAAACAT---------------------------GGTGGGGAGAGAAGCAGTGAAAC---
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             92132 179 -    302817 CTTACTGTGCCTCT-GG-GCATCTCCTTAGGCTGCATTACCAAGGGACCCCTGAATCA-TTTCCTGACGTTGatacctc----------ttaatgtgtctccaa-cgagcaatgt----gtcacaaaatacgtgctcaataaaagtgggttgaattgaatATGTATTTTGGGGGGTGGAGA-GGAAGCAGTGAAACT-A
i dasNov3.JH561790         C 0 C 0

a score=669827.000000
s hg38.chr6_GL000254v2_alt    208606 78 +   4827813 GAAGACTTCTGCCTAGGCGACTGTAAAGTGCTCCT-AAGCATCTACCCACCTCC-CTGCACACAAAAAC-TCTCCATTCTA
s panTro5.chr6              29196049 78 + 175400573 GAAGACTTCTGCCTAGGCGACTGTAAAGTGCTCCT-AAGCATCTACCCACCTCC-CTGCACACGCAAAC-TCTCCATTCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430073 78 + 173848474 GAAGACTTCTGCCTAGGCGACTGTAAAGTGCTCCT-AAGCATCTACCCACCTCC-CTGCACACGCAAAC-TCTCCATTCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5230764 78 +   6154872 GAAGACTTCTGCCTAGGCGACTGTAAAGTGCTCCT-AAGCATCTACCCACCTCC-CTGCACACACAAAC-TCTCCATTCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74233133 78 + 122973662 GAAGACTTCTGGCTAGGCGACTGTAAAGTGCTCCT-AAGCATCTACCCACCTCC-CTGCACACACAAAC-TCTCCATTCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29410313 78 + 172585720 AAAGACTTCTGGCTAGACGACTGTAAAGTGCTCCT-AAGCATCTACCCACCTCC-CTGCACACACAAAC-TCTCCATTCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29071143 78 - 170955103 AAAGACTTCTGGCTAGACGACTGTAAAGTGCTCCT-AAGCATCTACCCACCTCC-CTGCACACACAAAC-TCTCCATTCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2061009 78 -   2996164 AAAGACTTCTGGCTAGACGACTGTAAAGTGCTCCT-AAGCATCTACCCACCTCC-CTGCACACACAAAC-TCTCCATTCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1923795 78 -   2157725 AAAGACTTCTGGCTAGACGACTGTAAAGTGCTCCT-AAGCATCTACCCACCTCC-CTGCACACACAAAC-TCTCCATTCTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28367626 78 -  71996105 AAAGACTTCTGGCTAGATTACTGTAAAGTGCTCCT-AAGCATCTACCCACCTCC-CTGAACACACAAAC-TCTCCATTCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2057362 78 +   2316924 AAAGACTTCTGGCTAGACGACTGTAAAGTGCTCCT-AAGCATCTACCCACCTCC-CTGCACACACAAAC-TCTCCATTCTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1927770 78 -   3067355 AAAGCCTTCTGGCTAGATGACTGTAAAGCGCTCCT-AAGCATCTACCCACCTCC-CTGCACACACAAAC-TCTCCATTCTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171454001 53 - 171630274 -------------------------AAGTGCTCCT-AAGTATCTACCCACCTCC-CTATATACACAAAC-TCTCCATTCTA
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            279101 44 -    375362 ----------------------------------T-AAGTATCTACCCACCTCC-CGATATACACAAAC-TCTCCATTCTA
i saiBol1.JH378348         C 0 I 1
s aotNan1.NW_018494050v1      209738 53 -    285216 -------------------------AAGTGCTCCT-AAGTATCTACCCACCTCC-CTATATACACAAAC-TCTCCATTCTA
i aotNan1.NW_018494050v1   C 0 I 24
s otoGar3.GL873742           1572868 80 -   2232465 AAAGACTTCTGCCTAAATGACTATAAAGTGTTCTTAAAATATCTACCCCCTTCCTCCACATACATAAAC-TTTGCATTCTA
i otoGar3.GL873742         C 0 I 2
s canFam3.chr35             25941922 63 +  26524999 GAAGACTTTTGGCCAGGTAACTGTGAAGTTCTCCT-G----------------T-TTATACACACACACTTCTCCATTCCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             92311 40 -    302817 AAATACCTCTGGCCAG-----------GTGCTCAT-A------------------TGGG-----------TCTCCATTCTA
i dasNov3.JH561790         C 0 C 0
e cebCap1.NW_016108108v1      276314 275 -    373274 I

a score=-8068.000000
s hg38.chr6_GL000254v2_alt    208684 2 +   4827813 TC
s panTro5.chr6              29196127 2 + 175400573 TC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430151 2 + 173848474 TC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5230842 1 +   6154872 T-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74233211 2 + 122973662 TC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29410391 2 + 172585720 TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29071221 2 - 170955103 TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2061087 2 -   2996164 TT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1923873 2 -   2157725 TT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28367704 2 -  71996105 TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2057440 2 +   2316924 TT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1927848 2 -   3067355 TT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171454055 1 - 171630274 C-
i calJac3.chr4             I 1 C 0
s saiBol1.JH378348            279146 1 -    375362 C-
i saiBol1.JH378348         I 1 I 47
s canFam3.chr35             25941985 1 +  26524999 -T
i canFam3.chr35            C 0 I 1
s dasNov3.JH561790             92351 2 -    302817 TT
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1572948 2 -   2232465 I
e aotNan1.NW_018494050v1      209791 24 -    285216 I
e cebCap1.NW_016108108v1      276314 275 -    373274 I

a score=208114.000000
s hg38.chr6_GL000254v2_alt    208686 26 +   4827813 TCCTCGAGTCTCCTAGCCTT---AAAAGA
s panTro5.chr6              29196129 26 + 175400573 TCCTCGAGTCTCCTAGCCTT---AAAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430153 26 + 173848474 TCCTCGAGTCTCCTAGCCTT---AAAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5230843 26 +   6154872 TCCCCGAGTCTCCTAGCCTT---AAAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74233213 26 + 122973662 TCCTCGAGTCTCCTAGCCTT---AAAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29410393 26 + 172585720 TCCTCGAGTCTCCTAGCCTT---AAAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29071223 26 - 170955103 TCCTCGAGTCTCCTAGCCTT---AAAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2061089 26 -   2996164 TCCTCGAGTCTCCTAGCCTT---AAAAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1923875 26 -   2157725 TCCTCGAGTCTCCTAGCCTT---AAAAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28367706 26 -  71996105 TCCTCGAGTCTCCTAGCCTT---AAAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2057442 26 +   2316924 TCCTCGAGTCTCCTAGCCTT---AAAAGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1927850 26 -   3067355 TCCTCGAGTCTCCTAGCCTT---AAAAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171454056  8 - 171630274 ------------------TT---aaaaaa
i calJac3.chr4             C 0 I 20
s otoGar3.GL873742           1572950 25 -   2232465 TCTTTAAGTCTCCTTGTCTT---AAAAA-
i otoGar3.GL873742         I 2 C 0
s canFam3.chr35             25941987 26 +  26524999 TCCATGAGTCTCCTGGCCTT---CAAAGA
i canFam3.chr35            I 1 C 0
s dasNov3.JH561790             92353 29 -    302817 TTTATTATTCTCCTAGTCTTGTGAAAAGA
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            279147 47 -    375362 I
e aotNan1.NW_018494050v1      209791 24 -    285216 I
e cebCap1.NW_016108108v1      276314 275 -    373274 I

a score=395756.000000
s hg38.chr6_GL000254v2_alt    208712 56 +   4827813 TGGTCTAA-ACTACCCCAGATCCAGGTAAATAACGGATCAAGTCCTTCTTCCCTAAA
s panTro5.chr6              29196155 56 + 175400573 TGGTCTAA-ACTACCCCAGATCCAGGAAAATAACGGATCAAGTCCTTCTTCTCTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430179 56 + 173848474 TGGTCTAA-ACTACCCCAGATCCAGGAAAATAACGGATCAAGTCCTTCTTCCCTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5230869 56 +   6154872 TGGTCTAA-ACTACCCCAGATCCAGGTAAATAACGGATCAAGTCCTTCTTCCCTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74233239 56 + 122973662 TGGTCTAA-ACTACCCCAGATCCAGGTAAATAACAGATCAAGTCCTTCTTCCCTAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29410419 56 + 172585720 TGGTCTAA-ACTGCTCCAGATCCGGGTAAATAACGGATCAAGTCCTTCTTCCCTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29071249 56 - 170955103 TGGTCTAA-ACTGCTCCAGATCCGGGTAAATAACGGATCAAGTCCTTCTTCCCTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2061115 56 -   2996164 TGGTCTAA-ACTGCTCCAGATCCGGGTAAATAACGGATCAAGTCATTCTTCCCTAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1923901 56 -   2157725 TGGTCTAA-ACTGCTCCAGATCCAGGTAAATAACGGATCAAGTCCTTCTTCCCTAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28367732 56 -  71996105 TGGTCTAA-ACTGCTCCAGATCCAGGTAAATAACGGATCAAGTCCTTCTTCCCTAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2057468 56 +   2316924 TGGTCTAA-ACTACTCCAGATCCAGGTAAATAACGGATCAAGTCCTTCTTCCCTAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1927876 56 -   3067355 TGGTCTAA-ACTGCCCCAGATCCAGGTAAATAACGGATCAAGTCCTTCTTCCCTAAA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1572975 47 -   2232465 TGATCTAA-ACGA---------TAGCTAGATGATGAGCCAGGTCATTCTTCTCTAGC
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25942013 56 +  26524999 TGGCCTAA-GCTATCTTAGATCTATCTGAGCAATGAACCAAGTCTTTTCTCCCCAGT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             92382 57 -    302817 TCCTCTAACCCTGTTTCCAGTCTAGCTGAATAATGAAGCAATTCTTTCTTCCCCAGT
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            279147 47 -    375362 I
e aotNan1.NW_018494050v1      209791 24 -    285216 I
e cebCap1.NW_016108108v1      276314 275 -    373274 I
e calJac3.chr4             171454064 20 - 171630274 I

a score=458096.000000
s hg38.chr6_GL000254v2_alt    208768 42 +   4827813 ACAGGT-GTTATTCTTTCT-----ATT-CTATGAGCCTCCACCTTATTT
s panTro5.chr6              29196211 42 + 175400573 ACAGGT-GTTATTCTTTCT-----ATT-CTATGAGCCTCCACCTTATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430235 42 + 173848474 ACAGGT-GTTATTCTTTCT-----ATT-CTATGAGCCTCCACCTTATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5230925 42 +   6154872 ACAGGT-GTTATTCTTTCT-----ATT-CTATGAGCCTCCACCTTATTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74233295 42 + 122973662 ACAGGT-GTCATTCTTTCT-----ATT-CTATGAGCCTCCACCTTATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29410475 42 + 172585720 ACAGGT-GTCATTCTTTTT-----ATT-CTATGAGCCTGCACCTTATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29071305 42 - 170955103 ACAGGT-GTCATTCTTTTT-----ATT-CTATGAGCCTGCACCTTATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2061171 42 -   2996164 ACAGGT-GTCATTCTTTTT-----ATT-CTATGAGCCTGCACCTTATTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1923957 42 -   2157725 ACAGGT-GTCATTCTTTTT-----ATT-CTATGAGCCTCCACCTTATTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28367788 42 -  71996105 ACAGGT-GTCATTCTTTTT-----ATT-CTATGAGCCTCCACCTTATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2057524 42 +   2316924 ACAGGT-GTCATTCTTTTT-----ATT-CTATGAGCCTCCACCTTATTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1927932 42 -   3067355 ACAGGT-GTCATTCTTTTT-----ATT-CTATGAGCCTCCACCTTATTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171454084 42 - 171630274 ACAGGT-GTCGTTCTTTTT-----ATT-CTACGAGCCTCCATCTGATTT
i calJac3.chr4             I 20 I 2
s saiBol1.JH378348            279194 41 -    375362 ACAGGT-GTCATTCTTTTT-----ATT-CTACGAGCCTCCACCTG-ttt
i saiBol1.JH378348         I 47 I 2
s aotNan1.NW_018494050v1      209815 42 -    285216 ACAGGT-GTCATTCTTTTT-----ATT-CTAAGAGCCTCCACCTGATTT
i aotNan1.NW_018494050v1   I 24 I 205
s otoGar3.GL873742           1573022 47 -   2232465 ACAGGT-ATCATTTTCTTTTTTTAATT-CTATGAGCCTTTGCCTTATGT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25942069 44 +  26524999 ACAGGTGGGGATCCTTTTT-----ATTCCCATGAGCTATAATCTTATTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             92439 42 -    302817 ACCGGT-GGCAGCCTTTTC-----ATT-CCATAAGCTGCAACTTTATTT
i dasNov3.JH561790         C 0 C 0
e cebCap1.NW_016108108v1      276314 275 -    373274 I

a score=26087.000000
s hg38.chr6_GL000254v2_alt    208810 18 +   4827813 CTTa------------------------------------aaaaaaaa-----------------aaagaa
s panTro5.chr6              29196253 27 + 175400573 CTTa------------------------------------aaaaaaaaaaaa------aaaag--aaagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430277 22 + 173848474 CTTa------------------------------------aaaaaaaaaaga-------------aaagaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5230967 29 +   6154872 CTTa------------------------------------aaaaaaaaaaag------aaaagaaaaagaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74233337 18 + 122973662 CTTa------------------------------------aaaaaaaa-----------------aaaaaa
i nomLeu3.chr1a            C 0 I 313
s rheMac8.chr4              29410517 69 + 172585720 CTTaaaaaaaaaaaaaagaaaaaaaaaagaaaagaaaagaaagaaagaaaaagt--aaaaaggaaaaagaa
i rheMac8.chr4             C 0 I 4
s macFas5.chr4              29071347 69 - 170955103 CTTaaaaaaaaaaaaaaaaaaaaaaaaagaaaagaaaagaaagaaagaaaaaGT--AAAAAGGAAAAAGAA
i macFas5.chr4             C 0 I 4
s macNem1.NW_012011356v1     2061213 69 -   2996164 CTTaaaaaaaaaaaaaaaaaaaagaaaagaaaagaaaagaaagaaagaaaaagt--aaaaaggaaaaagaa
i macNem1.NW_012011356v1   C 0 I 4
s cerAty1.NW_012001495v1     1923999 35 -   2157725 CTTA----------------------------------Gaaaaaaagaaaaagg--aaaaaggaaaaagaa
i cerAty1.NW_012001495v1   C 0 I 4
s chlSab2.chr17             28367830 46 -  71996105 CTTaaaaaaaaaaaa-----------------------agaaaaaagaaaaagg--aaaaaggaaaaagaa
i chlSab2.chr17            C 0 I 4
s manLeu1.NW_012104165v1     2057566 36 +   2316924 CTTagaa---------------------------------aaaaaagaaaaagg--aaaaaggaaaaagaa
i manLeu1.NW_012104165v1   C 0 I 4
s colAng1.NW_012115566v1     1927974 33 -   3067355 CTTT------------------------------------aaaaaagaaaaaaa--aaagaggaaaaagaa
i colAng1.NW_012115566v1   C 0 I 4
s calJac3.chr4             171454128 35 - 171630274 TTAA------------------------------------AATAAAGAAACAATAAAAAAAGGCAAAAGAA
i calJac3.chr4             I 2 I 5
s saiBol1.JH378348            279237 35 -    375362 ttta------------------------------------aataaagaaataaataaaaaaGGAAAAAGAA
i saiBol1.JH378348         I 2 I 5
s otoGar3.GL873742           1573069 46 -   2232465 -----------------------GTCAAAAAaggaggaggaggaagaagaggag--gagaaggaaaaagaa
i otoGar3.GL873742         C 0 I 6
s canFam3.chr35             25942113 13 +  26524999 CTTA------------------------------------AAGAATAAG----------------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             92481 13 -    302817 CTAA------------------------------------AAGAAAAAG----------------------
i dasNov3.JH561790         C 0 C 0
e aotNan1.NW_018494050v1      209857 205 -    285216 I
e cebCap1.NW_016108108v1      276314 275 -    373274 I

a score=136973.000000
s hg38.chr6_GL000254v2_alt    208828 14 +   4827813 aaaaaTGTTTACTG
s panTro5.chr6              29196280 14 + 175400573 aaaaaTGTTTACTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430299 14 + 173848474 aaaaaTGTTTACTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5230996 14 +   6154872 aaaaaTGTTTACTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74233668 14 + 122973662 aaaaaTGTTTACTG
i nomLeu3.chr1a            I 313 C 0
s rheMac8.chr4              29410590 14 + 172585720 aaaaaTGGTTACTG
i rheMac8.chr4             I 4 C 0
s macFas5.chr4              29071420 14 - 170955103 AAAAATGGTTACTG
i macFas5.chr4             I 4 C 0
s macNem1.NW_012011356v1     2061286 14 -   2996164 aaaaaTGGTTACTG
i macNem1.NW_012011356v1   I 4 C 0
s cerAty1.NW_012001495v1     1924038 14 -   2157725 aaaaaTGGTTACTG
i cerAty1.NW_012001495v1   I 4 C 0
s chlSab2.chr17             28367880 14 -  71996105 aaaaaTGGTTACTG
i chlSab2.chr17            I 4 C 0
s manLeu1.NW_012104165v1     2057606 14 +   2316924 aaaaaTGGTTACTG
i manLeu1.NW_012104165v1   I 4 C 0
s colAng1.NW_012115566v1     1928011 14 -   3067355 aaaaaTGGTTACTG
i colAng1.NW_012115566v1   I 4 C 0
s calJac3.chr4             171454168 14 - 171630274 AAAAATGTTTACGG
i calJac3.chr4             I 5 I 1
s saiBol1.JH378348            279277 14 -    375362 AAAAATGTTTACTG
i saiBol1.JH378348         I 5 I 1
s otoGar3.GL873742           1573121 14 -   2232465 agaaaagTTCACTG
i otoGar3.GL873742         I 6 I 2
s canFam3.chr35             25942126 14 +  26524999 AAAAATGACCACTG
i canFam3.chr35            C 0 I 2
s dasNov3.JH561790             92494 14 -    302817 GAAAACGTCCCCTG
i dasNov3.JH561790         C 0 C 0
e aotNan1.NW_018494050v1      209857 205 -    285216 I
e cebCap1.NW_016108108v1      276314 275 -    373274 I

a score=464797.000000
s hg38.chr6_GL000254v2_alt    208842 53 +   4827813 --TTTAAGAAGATAACAGAATCTCA-AAAGCTAACTCTTCAACTGTGTTCAACTAA
s panTro5.chr6              29196294 53 + 175400573 --TTTAAGAAGATAGCAGAATCTCA-AAAGCTAACTCTTCAACTGTGTTCAACTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430313 53 + 173848474 --TTTAAGAAGATAGCAGAATCTCA-AAAGCTAACTCTTCAACTGTGTTCAACTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5231010 53 +   6154872 --TTTAAGATGATATCAGAATCTCA-AAAGCTAACTCTTCATCTGTGTTCAACTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74233682 41 + 122973662 --TTTAAGATGATATCAGAATCTCA-AAAG------------CTGTGTTCAACTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29410604 53 + 172585720 --TTTAAGATAATATCAGAATCTCA-AAAGCTAACTCTTCAACTGTGTTCAACTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29071434 53 - 170955103 --TTTAAGATAATATCAGAATCTCA-AAAGCTAACTCTTCAACTGTGTTCAACTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2061300 53 -   2996164 --TTTAAGATAATATCAGAATCTCA-AAAGCTAACTCTTCAACTGTGTTCAACTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1924052 53 -   2157725 --TTTAAGATAATATCAGAATCTCA-AAAGCTAACTCTTCAACTGTGTTCAACTAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28367894 53 -  71996105 --TTTAAGATAATATTAGAATCTCA-AAAGCTAACTCTTCAACCGTGTTCAACTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2057620 53 +   2316924 --TTTAAGATAATATCAGAATCTCA-AAAGCTAACTCTTCAACTGTGTTCAACTAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1928025 53 -   3067355 --TTTAAGATAATATCAGAATCTTA-AAAGCTAACTCTTCAGCTGTGTTCAACTAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171454183 53 - 171630274 --TTTAAGATGATATCAGAAACTCA-AAAGCTAAGTCTTCAACTGTGTTCACCTAA
i calJac3.chr4             I 1 C 0
s saiBol1.JH378348            279292 54 -    375362 --TTGAAGATGATATCAGAACCTCGTAAAGCGAACTCTTGAACTGTGTTCAACTGA
i saiBol1.JH378348         I 1 C 0
s aotNan1.NW_018494050v1      210062 53 -    285216 --TTTAAGATGATATCAGAACCTCA-AAAGCTAACTCTTCAACTGTGTTCAACTAA
i aotNan1.NW_018494050v1   I 205 I 10
s otoGar3.GL873742           1573137 43 -   2232465 --TTTTAAATGATACCAGAGCTTCA-AAAGTCTACTATTCAACTAG----------
i otoGar3.GL873742         I 2 C 0
s canFam3.chr35             25942142 41 +  26524999 --TTTAAAGGGATACCAGGACATCG-AAAGCCCATTATTTAACT------------
i canFam3.chr35            I 2 C 0
s dasNov3.JH561790             92508 30 -    302817 GTCCTAAAGTGATACCAGAACCTTA-AATAC-------------------------
i dasNov3.JH561790         C 0 C 0
e cebCap1.NW_016108108v1      276314 275 -    373274 I

a score=244646.000000
s hg38.chr6_GL000254v2_alt    208895 34 +   4827813 GGACCTTAAACTGCTCTCTGAGGATAGGTGAAGC
s panTro5.chr6              29196347 34 + 175400573 GGACCTTAAACTGCTCTCTGAGGATAGGTGAAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430366 34 + 173848474 GGACCTTAAACTGCTCTCTGAGGATAGGTGAAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5231063 34 +   6154872 GGACCTTAAACTGCTCTCTGAGGATAGGTGAAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74233723 34 + 122973662 GGGCCTTAAACTGCTCTCTGAGGATAGGTGAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29410657 34 + 172585720 GGGCCTTAAACTGCTCTCTGAGGACAGGTGAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29071487 34 - 170955103 GGGCCTTAAACTGCTCTCTGAGGATAGGTGAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2061353 34 -   2996164 GGGCCTTAAACTGCTCTCTGAGGATAGGTGAAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1924105 34 -   2157725 GGGCCTTGAACTGCTCTCTGAGGATAGGTGAAGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28367947 34 -  71996105 GGTCCTTAAACTGCTCTCTGAGGATAGGTGAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2057673 34 +   2316924 GGGCCTTGAACTGCTCTCTGAGGATAGGTGAAGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1928078 34 -   3067355 GGGCCTTAAACTGCTCTCTGAGGACAGGTGAAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171454236 10 - 171630274 ------------------------GAGGCAAAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            279346 10 -    375362 ------------------------AAGGCAAAGG
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1573180 34 -   2232465 AGCCCTTAAACTGTGCTCTGACAATAGGCAAAGG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25942183 28 +  26524999 -----TTAAACTACTCTCTGAGGATAGGCAAGG-
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             92538 32 -    302817 -AACTTTAAATTGCCTTCTGGGAATGGGCAAAG-
i dasNov3.JH561790         C 0 C 0
e aotNan1.NW_018494050v1      210115 10 -    285216 I
e cebCap1.NW_016108108v1      276314 275 -    373274 I

a score=285776.000000
s hg38.chr6_GL000254v2_alt    208929 44 +   4827813 GGGAAAGGCTCTAGGTGTCTGGTGACTGTTTCTTTTGTTGGTTC
s panTro5.chr6              29196381 44 + 175400573 GGGAAAGGCTCTAGGTGTCTGGTGACTGTTTCTTTTGTTGGTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430400 44 + 173848474 GGGAAAGGCTCTAGGTGTCTGGTGACTGTTTCTTTTGTTGGTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5231097 44 +   6154872 GGGAAAGGCTCTAAGTGTCTGGTGACTGTTTCTTTTGTTGGTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74233757 26 + 122973662 GGGAAAGGCTCTAGG------------------TTTGTTGGTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29410691 44 + 172585720 GGGAAAGGCTGTAGGTGTCTGGTGACtgtttcgtttgttggttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29071521 44 - 170955103 GGGAAAGGCTGTAGGTGTCTGGTGACtgtttcgtttgttggttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2061387 44 -   2996164 GGGAAAGGCTGTAGGTGTCTGGTGACtgtttcgtttgttggttc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1924139 44 -   2157725 GGGAAAGGCTCCAGGTGTCTGGTGACTGTTTCGTTTGCTGGTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28367981 44 -  71996105 GGGAAAGGCTCTAGGTGTCTGGTGACtgtttcgtttgttggttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2057707 44 +   2316924 GGGAAAGGCTCTAGGTGTCTGGTGACTGTTTCGTTTGCTGGTTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1928112 44 -   3067355 GGGAAAGGCTCTAGGTGTCTGGTGACtgtttcgtttgttggttc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171454246 39 - 171630274 TGGAAAGACTCTA-GTGTCTGGCGACTGTTTTGATGGTTA----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            279356 39 -    375362 GGGAAAGGCTCTA-GTGTCTGGCGACTGTTTTGATTGATA----
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      210125 39 -    285216 GGGAAAGGCTCTA-GTGTCTGGCGACTGTTTTGATTGTTA----
i aotNan1.NW_018494050v1   I 10 C 0
s otoGar3.GL873742           1573214 33 -   2232465 AAAAAAGGGTCTATGTGACTA-----TATTTTATTTGT------
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25942211 19 +  26524999 GGGAGGGGGTATAAATGAC-------------------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             92570 21 -    302817 AGGAAAGGGTGTAGGTGACTA-----------------------
i dasNov3.JH561790         C 0 C 0
e cebCap1.NW_016108108v1      276314 275 -    373274 I

a score=2689905.000000
s hg38.chr6_GL000254v2_alt    208973 231 +   4827813 GTTTG-TTTTTTCAGCCTTAGCACATTTAT-CCCTTGGAGAAGACAA------------TGGAAAATAGGGCAGATGAGCGTGCGTGGCTTATTTATTCTTGAGTCTGGAGTTAAGAAGGTTGTACTTTT-TCCTTAGGATTGCCCTTGGTTGGTTCACAAATTTCGCAAAGTGAATGAAAACACATGAAGGCCA------------CTGAAGGGAATAACTAGGGGACG------AGATGTCTGAGCCCCTAAATCGAGAAAC-
s panTro5.chr6              29196425 231 + 175400573 GTTTG-TTTTTTCAGCCTTAGCACATTTAT-CCCTTGGAGAAGACAA------------TGGAAAATAGGGCAGATGAGCGTGCGTGGCTTATTTATTCTTGAGTCTGGAGTTAAGAAGGTTGTACTTTT-TCCTTAGGATTGCCCTTGGTTGGTTCACAAATCTCGCAAAGTGAATGAAAACACATGAAGGCCA------------CTGAAGGGAATAACTAGGGGACG------AGATGTCTGAGCCCCTAAATCGAGAAAC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430444 231 + 173848474 GTTTG-TTTTTTCAGCCTTAGCACATTTAT-CCCTTGGAGAAGACAA------------TGGAAAATAGGGCAGATGAGCGTGCGTGGCTTATTTATTCTTGAGTCTGGAGTTAAGAAGGTTGTACTTTT-TCCTTAGGATTGCCCTTGGTTGGTTCACAAATCTCGCAAAGTGAATGAAAACACATGAAGGCCA------------CTGAAGGGAATAACTAGGGGACG------AGATGTCTGAGCCCCTAAATCGAGAAAC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5231141 231 +   6154872 GTTTG-TTTTTTCAGCCTTAGCACATTTAT-CCCTTGGAGAAGACAA------------TGGAAAATAGGGCAGATGAGCGTGCGTGGCTTATTTATTCTTGAGTCTGGAGTTAAGAAGGTTGTACTTTT-TCCTTAGGATTGCCCTTGGTTGGCTCACAAATCTTGCAAAGTGAATGAAAACACATGAAGGCCA------------CTGAAGGGAATAACTAGGGGACG------AGATGTCTGAGCCCCTAAATCGAGAAAC-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74233783 231 + 122973662 CTTTG-TTTTCTCAGCCTTAGCACATTTAT-CCCTTGGAGAAGACAA------------TGGAAAATAGGGCAGATGAGCGTGCGTGGCTTATTTATTCTTGAGTCTGGATTTAAGAAGGTTGTACTTTT-TCCTTAGAATTGCCCTTGGTTGGTTCACAAATCTTGCAAAGTGAATGAAAACACATGAAGGACA------------CTGAAGGGAATAACTAGGGGACG------AGATGTCTGAGCCCCTAAATCGAGAAAT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29410735 230 + 172585720 gtttg-ttttttCAGCCTTAGCACATTTAT--CCTTGGAGAAGACAA------------TGGAAAATAGGGCAGATGAGCGTGCGTGGCTTATTTATTCTTGAGTCTGGAGTTAAGAAGGTTGTACTTTT-TCCGTAGAATTGCCCATGGTTGGTTCACAAATCTTGCAAAGTGAATGAAAACACATGAAGGCCA------------CTGAAGGGAATAACTAGGGTAAG------AGATTTCTGAACTCCTAAATCGAGAAAC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29071565 230 - 170955103 gtttg-ttttttCAGCCTTAGCACATTTAT--CCTTGGAGAAGACAA------------TGGAAAATAGGGCAGATGAGCGTGCGTGGCTTATTTATTCTTGAGTCTGGAGTTAAGAAGGTTGTACTTTT-TCCGTAGAATTGCCCATGGTTGGTTCACAAATCTTGCAAAGTGAATGAAAACACATGAAGGCCA------------CTGAAGGGAATAACTAGGGTAAG------AGATTTCTGAACTCCTAAATCGAGAAAC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2061431 231 -   2996164 gtttgtttttttCAGCCTTAGCACATTTAT--CCTTGGAGAAGACAA------------TGGAAAATAGGGCAGATGAGCGTGCGTGGCTTATTTATTCTTGAGTCTGGAGTTAAGAAGGTTGTACTTTT-TCCGTAGAATTGCCCATGGTTGGTTCACAAATCTTGCAAAGTGAATGAAAACACATGAGGGCCA------------CTGAAGGGAATAACTAGGGTAAG------AGATTTCTGAACTCCTAAATCGAGAAAC-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1924183 230 -   2157725 GTTTG-CTTTTTCAGCCTTAGCACATTTAT--CCTTGGAGAAGACAA------------TGGAAAATAGGGCAGATGAGCGTGCGTGGCTTATTTATTCTTGAGTCTGGAGTTAAGAAGGTTGTACTTTT-TCCTTAGAATTGCCCATGATTGGTTCACAAATCTTGCAAAGTGAATGAAAACACATGAAGGCCA------------CTGAAGGGAGTAACAAGGGTAAG------AGATTTCTGAGCTCCTAAATCTAGAAAC-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28368025 230 -  71996105 gtttg-ttttttCAGCCTTAGCACATTTAT--CCTTGGAGAAGACAA------------TGGAAAATAGGGCAGATGAGCGTGCGTGGCTTATTTATTCTTGAGTCTGGAGTTAAGAAGGTTGTACTTTT-TCCTTAGAATTGCCCATGATTGGTTCACAAATCTTGCAAAGTGAATGAAAACACATGAAGGCCA------------CTGAAGGGAGTAACAAGGGTAAG------AGATTTCTGAGCTCCTAAATCTAGAAAC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2057751 230 +   2316924 GTTTG-CTTTTTCAGCCTTAGCACATTTGT--CCTTGGAGAAGACAA------------TGGAAAATAGGGCGGATGAGCGTGCGTGGCTTATTTATTCTTGAGTCTGGAGTTAAGAAGGTTGTACTTTT-TCCTTAGAATTGCCCATGATTGGTTCACAAATCTTGCAAAGTGAATGAAAACACATGAAGGCCA------------CTGAAGGGAGTAACAAGGGTAAG------AGATTTCTGAGCTCCTAAATCTAGAAAC-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1928156 230 -   3067355 gtttg-ttttttCAACCTTAGCACATTTAT--CCTTGGAGAAGACAA------------TGGAAAATAGGGCAGATGAGCGTGCGTGGCTTATTTATTCTTGAGTCTGGAGTTAAGAAGGTTGTACTTTT-TCGTTAGAATTGCCCCCGATTGGTTCACAAATCTTGCAAAGTGAATGAAAACACATGAAGGCCA------------CTGAAAGGAATAACTAGGGTAAG------AGATTTCTGAGCTCCTAAATAGAGAAAC-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171454285 231 - 171630274 GCTTG-TCATTTTAGCGTTATCACATTTAT-CCCTTGGAGAAGACAA------------TGGAAAATAGGGCAGATGAGCGTGGTTGGCTTATTTACTCTTGAGTCTGGAGTTAAGAAGGTTGTCCTTTT-TCCTTAGAATTGCCCGTGGTTGGTTCACAAATCTTGCAAAGTGAATAAAAACACATGAAGGCCA------------CTGAAGGGAATAACTAGGGGAGA------AGATATCTGAGCCCTTAAATCGAGAAAC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            279395 212 -    375362 GTTTG-TCTTTTTAGCCTCATCACGTTTAT-CCCTTGGAGAAGACAA------------TGGAAAATAGGGTAGATGAGCGTGCATGGCTTATTTATTCTTGAGTCTGGAGTTAAGAAGGTTGTATTTTT----------TTTCCC----------CACTAATCATGCAAAGTCAATAAAAACACATGAAGGCCA------------CTGAAGGAAATAACTAGGGGAAG------AGATATCTGAGCCCTTAAATTGGGAAAC-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      276589 232 -    373274 GTTTG-TCTTTTTAGACTTATCGCATTTAT-CCCTTGGAGAAGACAA------------TGGAAAATAGGGCAGATGAGCGTGCATGGCTTATTTATTCTTGAGTCTGGAGTTAAGAAGGTTGTACTTTTTTTCTTAGAATTGCCGGTGCTTGGTTCACAAATCTTGCAAAGTGAATAAAAACACATGAAGGCCA------------CTGAAGGGAATAACTAGGGGAGG------AGATACCTGAGCCCTTAAATCGAGAAAC-
i cebCap1.NW_016108108v1   I 275 C 0
s aotNan1.NW_018494050v1      210164 231 -    285216 GTTTG-TCTTTTTAGCCTTATCACATTTAT-CCCTTGGAGAAGACAA------------TGGAAAATAGGGCAGATGAGCGTGCATGGCTTATTTATTCTTGAGTCTGGAGTTAAGAAGGTTGTACTTTT-TCCTTAGAATTGCCCGTGGTTGGTTCACAAATCTTGCAAAGTGAATAAAAACACATGAAGACCA------------CTGAAGGGAATAACTAGGGGAGA------AGATATCTGAGCCCTTAAATCGAGAAAC-
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1573247 238 -   2232465 ------TTATTTCAGCCTTAGCACATTTAT-TTCCTGGAATCAACAGTGGATAAAGACCTGGAAAATAGGACAGATGGCCATG---GGTTGGTTTATTCTTGGGTCTGGTATTAAGAAGGCTGAATGTTT-TCCTTGGAATTGCTGATG-TCACTTCAGAAATATTTCAAGGTGGATGCAAACACATAAAGGGAATGTGATGGGAATCTGATGGGAACGATT-GAGGAAG------AGATGTCTGAGCCCC-------AGAAAC-
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25942230 241 +  26524999 ---TG-CTTTTTCAGCCTTAGCACATTTATTCCCTAGGAAAGGATAGTGGGTAAAGATCTGGAAAACAGGGCAGATGGCCACG---GGTTGGTTTATTTTTGAGTGTGGAATTCAAAAGCCTGTACCTTT-CCCTT-GGATTGCCCATG--TGGTTAACAAATATCACAGGGTGAATGCAAACAAATGAAGACCA------------CCTAAGGGAACATCTTGGGAAGGGTGGACAGATGCCTGGGCCCCACAATCCAGAAGC-
i canFam3.chr35            C 0 I 1446
s dasNov3.JH561790             92591 220 -    302817 ------TTTTTTCAGCTCTATCACATCTGTCCCCAAGGGGATGGCAG----------------AAATAGGGCAAATGGCCATG---GGTGTGCTCTTTCTTGAGCATGGAGTCAGGAAAGCGGTGCCTTT-TCCTTGGGATCATCTGTGGGTGGCTCACAAACATGGCAAGGCGAATGCCAGCACGTGGAGGTCA------------CTGAGGGGGATGGCTGTGGGAAG------AGATGCCTG-GCCATACAGTTCAGAACCC
i dasNov3.JH561790         C 0 C 0

a score=103597.000000
s hg38.chr6_GL000254v2_alt    209204 11 +   4827813 ATTTGGGCACC---
s panTro5.chr6              29196656 11 + 175400573 ATTTGGGCACT---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430675 11 + 173848474 ATTTGGGCACT---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5231372 11 +   6154872 ATTTGGGCACT---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74234014 11 + 122973662 ATTTGGGCACT---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29410965 11 + 172585720 AGTTGGGCACT---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29071795 11 - 170955103 AGTTGGGCACT---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2061662 11 -   2996164 AGTTGGGCACT---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1924413 11 -   2157725 AGTTGGGCACT---
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28368255 11 -  71996105 AGTTGGGCACT---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2057981 11 +   2316924 AGTTGGGCACT---
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1928386 11 -   3067355 AGTTGGGTACT---
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171454516 11 - 171630274 AGTTGGGCACC---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            279607 11 -    375362 AGTTGGGCAGT---
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      276821 11 -    373274 AGTTGGGCAGT---
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      210395 11 -    285216 AGTTGGGCACT---
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1573485 11 -   2232465 AATTGGGCCCC---
i otoGar3.GL873742         C 0 I 1592
s dasNov3.JH561790             92811 14 -    302817 ACTTGTTCAGGATG
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25942471 1446 +  26524999 I

a score=74078.000000
s hg38.chr6_GL000254v2_alt    209215 8 +   4827813 GTTTGTGG
s panTro5.chr6              29196667 8 + 175400573 GTTTGTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430686 8 + 173848474 GTTTGTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5231383 8 +   6154872 GTTTGTGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74234025 8 + 122973662 GTTTGTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29410976 8 + 172585720 GTTTGGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29071806 8 - 170955103 GTTTGGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2061673 8 -   2996164 GTTTGGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1924424 8 -   2157725 GTTTGGGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28368266 8 -  71996105 GTTTGGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2057992 8 +   2316924 GTTTGGGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1928397 8 -   3067355 GTTTGGGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171454527 8 - 171630274 GTTTGGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            279618 8 -    375362 GTTTGGGG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      276832 8 -    373274 GTTTGGGG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      210406 8 -    285216 GATTGGAG
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             92825 8 -    302817 GCTTGTGG
i dasNov3.JH561790         C 0 I 3283
e canFam3.chr35             25942471 1446 +  26524999 I
e otoGar3.GL873742           1573496 1592 -   2232465 I

a score=31545.000000
s hg38.chr6_GL000254v2_alt    209223 3 +   4827813 GAC
s panTro5.chr6              29196675 3 + 175400573 GAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430694 3 + 173848474 GAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5231391 3 +   6154872 GAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74234033 3 + 122973662 GAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29410984 3 + 172585720 GAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29071814 3 - 170955103 GAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2061681 3 -   2996164 GAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1924432 3 -   2157725 GAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28368274 3 -  71996105 GAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2058000 3 +   2316924 GAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1928405 3 -   3067355 CAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171454535 3 - 171630274 GAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            279626 3 -    375362 GAC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      276840 3 -    373274 GAC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      210414 3 -    285216 GAC
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             92833 3283 -    302817 I
e canFam3.chr35             25942471 1446 +  26524999 I
e otoGar3.GL873742           1573496 1592 -   2232465 I

a score=157950.000000
s hg38.chr6_GL000254v2_alt    209226 19 +   4827813 TGTACATATAGGTGTTATC--
s panTro5.chr6              29196678 19 + 175400573 TGTACATATAGGTGTTATC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430697 19 + 173848474 TGTACATATAGGTGTTATC--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5231394 19 +   6154872 TGTACATATGGGTGTTATC--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74234036 19 + 122973662 TGTACATATGGGTGTTATC--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29410987 19 + 172585720 TGTACATATGGGTGTTACC--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29071817 19 - 170955103 TGTACATATGGGTGTTACC--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2061684 19 -   2996164 TGTACATATGGGTGTTACC--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1924435 19 -   2157725 TGTACATATGGGTGTTATC--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28368277 21 -  71996105 TGTACATATGGGTGTTATCGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2058003 19 +   2316924 TGTACATATGGGTGTTATC--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1928408 19 -   3067355 TGTATATATGGGTGTTGTC--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171454538 19 - 171630274 TGTACCTATGAGTGTTATC--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            279629  9 -    375362 TGTA----------TTATC--
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      276843  9 -    373274 TGTA----------TTATC--
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      210417 19 -    285216 TGTACCTATGAGTGTTATC--
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1575088 19 -   2232465 TGTAAGTATAGGTGTTATC--
i otoGar3.GL873742         I 1592 C 0
e dasNov3.JH561790             92833 3283 -    302817 I
e canFam3.chr35             25942471 1446 +  26524999 I

a score=752482.000000
s hg38.chr6_GL000254v2_alt    209245 73 +   4827813 TGTGGCCCCTAGGAAAACAGA------AGAGGAACCTGTCT-CACTTAGGAAGCTGTGAGAACTGCCCACACAAGGCTTG
s panTro5.chr6              29196697 73 + 175400573 TGTGGCCCCTAGGAAAACACA------AGAGGAACCTGTCT-CACTTAGGAAGCTGTGAGAACTGCCCACACAAGGCTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430716 73 + 173848474 TGTGGCCCCTAGGAAAACACA------AGAGGAACCTGTCT-CACTTAGGAAGCTGTGAGAACTGCCCACACAAGGCTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5231413 73 +   6154872 TGTGGCCCCTAGGAAAACAGA------AGAGGAATCTGTCT-CACTTAGGAAGCTGTGAGAACTGCCCACACAAGGCTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74234055 73 + 122973662 TGTGGCCCCTAGGAAAACAGA------AGAGGAACCTGCCT-CACTTAGGAAGCTGTGAGAACTGCCCACACAAGGCTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29411006 73 + 172585720 GGTGGCCCCTTGGGAAACAGA------AGAGGAACCTACCT-CACTTAGGAGGCAGTGAGAACTGCCCACACAATACTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29071836 73 - 170955103 GGTGGCCCCTTGGGAAACAGA------AGAGGAACCTACCT-CACTTAGGAGGCAGTGAGAACTGCTCACACAATACTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2061703 73 -   2996164 GGTGGCCCCTTGGGAAACAGA------AGAGGAACCTACCT-CACTTAGGAGGCAGTGAGAACTGCCCACACAATACTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1924454 73 -   2157725 GGTGGCCCCTTGGGAAACAGA------AGAGGGACCTGCCT-CACTTAGGAGGCAGTGAGAACTGCCCACACAAGGCTTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28368298 73 -  71996105 GGTGTTACCTTGGGAAATGGA------AGAGGAACCTGCCT-CACTTAGGAGGCAGTGAGAACTGCCCACACAAAGCTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2058022 73 +   2316924 GGTGGCCCCTTGGGAAACAGA------AGAGGGACCTGCCT-CACTTAGGAGGCAGTGAGAACTGCCCACACAAGGCTTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1928427 73 -   3067355 GGTGGCCCCTTGGGAAACAGA------AGAGGAACCTGCCT-CACTTAGGAGGCAGTGAGAACTGCCCACACAAGGCTTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171454557 73 - 171630274 TGTGGCCCCTGGGAAAACAGA------AGATAAATCTGCCT-CATTTAGTAGACTGTGAGAACTGCCCACACGGGGCTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            279638 73 -    375362 TCTGGCCCCTGCGAAAATAGA------AGATAACTCTGCTT-CACTTAGGAGACTGCGAGAACTGCCCACACGGGGCTTG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      276852 73 -    373274 TGTGGCCCCTGCGAAAACAGA------AGATAAATCTGCCT-CACTTAGGAGACTGTGAGAACTGCCCACACGGGGCTTG
i cebCap1.NW_016108108v1   C 0 I 14
s aotNan1.NW_018494050v1      210436 73 -    285216 TGTGGCCCCTGGGAAAACAGA------ATATAAATCTGCCT-CACTTATGAGACTGAGAGAACTGCCCACACGGGGCTTG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1575107 79 -   2232465 TCTGGCCCCTGGAGAAGCAGAAGTAGGAGAGAAACCTGCCT-GACTTAAGAGGCTGTAAGAATTGTCTACACTAAGCTTG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25943917 75 +  26524999 TGTGACCTCTGGGAAAACCCC-----TAGGGGGTCCTGCCTGGACTTCGGAGCCTGTGATAACTGTCTACACTGCGAGTG
i canFam3.chr35            I 1446 C 0
e dasNov3.JH561790             92833 3283 -    302817 I

a score=91377.000000
s hg38.chr6_GL000254v2_alt    209318 20 +   4827813 AAAATGGAACTTTACTGGGT
s panTro5.chr6              29196770 20 + 175400573 AAAATGGAACTTTACTGGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430789 20 + 173848474 AAAATGGAACTTTACTGGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5231486 20 +   6154872 AAAATGGAACTTTACTGGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74234128 20 + 122973662 AAAATGGACCTCTACTGGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29411079 20 + 172585720 AAAATGGACCTCTGCTGGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29071909 20 - 170955103 AAAATGGACCTCTGCTGGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2061776 20 -   2996164 AAAACGGACCTCTGCTGGGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1924527 20 -   2157725 AAAATGGACCTCTCCTGGGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28368371 20 -  71996105 AAAATGGACCTTTCCTGGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2058095 20 +   2316924 AAAATGGACCTCTCCTGGGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1928500 20 -   3067355 AAAATGGACCTCTCCTGGGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171454630 14 - 171630274 -GAAAGGATCTCTAA-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            279711 14 -    375362 -GAATGAATTTCTGA-----
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      210509  9 -    285216 ------GATCTCCAA-----
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1575186 19 -   2232465 AAAATGGACGTGTGTTGTT-
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25943992 19 +  26524999 -ACAGGGACGCGTACACAGC
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             92833 3283 -    302817 I
e cebCap1.NW_016108108v1      276925 14 -    373274 I

a score=-10401.000000
s hg38.chr6_GL000254v2_alt    209338 5 +   4827813 CAG----AA
s panTro5.chr6              29196790 5 + 175400573 CAG----AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430809 5 + 173848474 CAG----AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5231506 5 +   6154872 CAG----AA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74234148 5 + 122973662 CAG----AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29411099 3 + 172585720 CAG------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29071929 3 - 170955103 CAG------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2061796 3 -   2996164 CAG------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1924547 3 -   2157725 CAG------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28368391 5 -  71996105 CAGAA----
i chlSab2.chr17            C 0 I 8
s manLeu1.NW_012104165v1     2058115 5 +   2316924 CAGAA----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1928520 5 -   3067355 CAG--AA--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171454644 5 - 171630274 CAG----AA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            279725 5 -    375362 CAG----AA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      276939 5 -    373274 CAA----AA
i cebCap1.NW_016108108v1   I 14 C 0
s aotNan1.NW_018494050v1      210518 5 -    285216 CAG----AA
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25944011 5 +  26524999 CAG----AT
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             92833 3283 -    302817 I
e otoGar3.GL873742           1575205 0 -   2232465 C

a score=-76258.000000
s hg38.chr6_GL000254v2_alt    209343 32 +   4827813 TGACGAGGGGGAA--AAAAAA-AAAATACCTCAC-------------------------------------------A
s panTro5.chr6              29196795 33 + 175400573 TGACGAGGGGGAA--AAAAAACAAAATACCTCAC-------------------------------------------A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430814 32 + 173848474 TGACGAGGGGGAA--AAAAAG-AAAATACCTCAC-------------------------------------------A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5231511 27 +   6154872 TGACGAGGGGGAA--A------AAAATACGTCAC-------------------------------------------A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74234153 70 + 122973662 TGACGAGGGGGAA--A------AAAATACCTCACTCtggcagcggtgggattcgaacccacgcccccgaagagactgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29411102 14 + 172585720 ---------------------AAAAGAAACTCAC-------------------------------------------T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29071932 14 - 170955103 ---------------------AAAAGAAACTCAC-------------------------------------------T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2061799 14 -   2996164 ---------------------AAAAGAAACTCAC-------------------------------------------T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1924550 14 -   2157725 ---------------------AAAAGAAACTCAC-------------------------------------------T
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2058120 12 +   2316924 -----------------------AAGAAACTCAC-------------------------------------------T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1928525 12 -   3067355 -----------------------AAGAAACTCAC-------------------------------------------T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171454649 32 - 171630274 CGGGGAGGAGGA---GGAGGAAAGAAAACACTGC-------------------------------------------T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            279730 25 -    375362 TG-------AGA---AGAGGAAAGAAAAAGCCAC-------------------------------------------C
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      276944 35 -    373274 TGAGGAGGAGGaaagaaaaaaaaaaaaaaaGCAC-------------------------------------------C
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      210523 23 -    285216 TG---------A---TGAGGAAAGAAAAAACCGC-------------------------------------------C
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1575205 12 -   2232465 ------------------GAAAAAAGAACC------------------------------------------------
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25944016 16 +  26524999 ---------------GGCTGTAAAAAAGGCT-----------------------------------------------
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             92833 3283 -    302817 I
e chlSab2.chr17             28368396  8 -  71996105 I

a score=5891035.000000
s hg38.chr6_GL000254v2_alt    209375 573 +   4827813 CtggcagcggtgggattcgaacccacgcccccgaagagactggagccttaatccagcgccttagaccgctcggccacgctaccACCCACAGGGTGCGTCGCCGCTTTCAGTTTC---ACCCAAGTGACTGTCGCCCCTTTCCAGTCCTTTCATTCCCATTCCCACATCACCATAAGCCCTTCCCTCAGGCCCC--TTCTTCAGCATTC---CTTGCTTCTCAGCATAGCCCGAGAA--CCCCCGATCCCTGACACTTTGCTTCTTCTCAGCTCCCAGATGGATCCTGGACAGGATGCTGCAGGTGGTGCAGGAGGGGAATCCT-GCCCCATTTATCATCAACACAGTAAAAAGGGGTCGAAGAGACCGAGAGCGCCAGAGGACGCCATGGGCTCCACATCCACTTGGATTCCAGGAAGTAAGCCTCTCGACTTCAGGAGTAAGCAAGGCCAACCGTTTGGTTTGAGCCTGTTGCTTC-TAAGAAAAGC-------GAGG-AAAAA-TCCTGAGA-CCTCCTCCCCTCGCC---CTTCATCCACTTCAGGGGACCGAGTGTCTCCACGGAACTTCACAAGGGAGGA-AAAGAGTGAACTC--
s panTro5.chr6              29196828 574 + 175400573 CtggcagcggtgggattcgaacccacgcccccgaagagactggagccttaatccagcgccttagaccgctcggccacgctaccACCCGTAGGGTGTGTTGCCGCTTTCAGTTTC---ACCCAAGTGACTGTCGCCCCTTTCCAGTCTTTTCATTCCCATTCCCACATCACCATAAGCCCTTCCCTCAGGCCCC--TTCTTCAGCATTC---CTTGCTTCTCAGCATAGCCCGAGAA--CCCCCGATCCCCGACACTTTGCTTCTTCTCAGCTCCCAGATGGATCCTGGACAGGATGCTGCAGGTGGTGCAGGAGGGGAATCCT-GCCCCATTTATCATCAACACAGTAAAAAGGGGTCGAAGAGACCGAGAGCGCCAGAGGACGCCATGGGCTCCACATCCACTTGGATTCCAGGAAGTAAGCCTCTCGACTTCAGGAGTAAGCAAGTCCAACCGTTTGGTTTGAGCCTGTTGCTTC-TAAGAAAAGC-------GAGGAAAAAA-TCCTGAGA-CCTCCTCCCCTCGCC---CTTCATCCACTTCAGGGGACCAAGTGTCTCCACGGAACTTCACAAGGGAGGC-AAAGAGTGAACTC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29430846 573 + 173848474 CtggcagcggtgggattcgaacccacgcccccgaagagactggagccttaatccagcgccttagaccgctcggccacgctaccACCCGTAGGGTGCGTTGCCGCTTTCAGTTTC---ACCCAAGTGACTGTCGCCCCTTTCCAGTCTTTTCATTCCCATTCCCACATCACCATAAGCCCTTCCCTCAGGCCCC--TTCTTCAGCATTC---CTTGCTTCTCAGCATAGCCCGAGAA--CCCCCGATCCCCGACACTTTGCTTCTTCTCAGCTCCCAGATGGATCCTGGACAGGATGCTGCAGGTGGTGCAGGAGGGGAATCCT-GCCCCATTTATCATCAACACAGTAAAAAGGGGTCGAAGAGACCGAGAGCGCCAGAGGACGCCATGGGCTCCACATCCACTTGGATTCCAGGAAGTAAGCCTCTCGACTTCAGGAGTAAGCAAGTCCAACCGTTTGGTTTGAGCCTGTTGCTTC-TAAGAAAAGC-------GAGG-AAAAA-TCCTGAGA-CCTCCTCCCCTCGCC---CTTCATCCACTTCAGGGGACCAAGTGTCTCCACGGAACTTCACAAGGGAGGC-AAAGAGTGAACTC--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5231538 573 +   6154872 CtggcagcggtgggattcgaacccacgcccccgaagagactggagccttaatccagcgccttagaccgctcggccacgctaccAGCCGCAGGGTGGGTCGCCGCTTTCAGTTTC---ACCCAAGTGACTGTCGCCCCTTTCCAGTCTTTTCATTCCCATTCCCACATCACCATAAGCCCTTCCCTCAGGCCCC--TTCTTCAGCATTC---CTTGCTTCTCAGCATAGCCCGAGAA--CCCCCGATCCCCGACACTTTGCTTCCTCTCAGCTCCCAGGTGGATCCTGGACAGGATGCTGCAGGTGGTGCAGGAGGGGAATCCT-GCCCCATTTATCATCAACACAGTAAAAAGGGGTCGAAGAGACCGAGAGCGCCAGAGGACGCCATGGGCTCCACATCCGCTTGGATTCCAGGAAGTAAGCCTCTCGACTTCAGGAGTAAGCAAGTCCAACCGTTTGGTTTGAGCCTGCTGCTTC-TAAGAAAAGC-------GAGG-ACAAA-TCCTGAGA-CCTCCTCCCCTCGCC---CTTCATCCACTTCAGGGGACCGAGTGTCTCCACGGAACTTCACAAGGGAGGC-AAAGAGTGAACTC--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74234223 572 + 122973662 CtggcagcggtgggattcgaacccacgcccccgaagagactggagccttaatccagcgccttagaccgctcggccacgctaccGCCCATAGGCTATGTCGCCGCTTGCAGTTTC---ACCCAAGTGACTGTCGCCCCTTTCCAGTCCTTTCATCCCCATTCCCACATCACTATAAGCCCTTCCCTCAGGTCCC--TTCTTCAGCATTC---CTTGCTTCTCAGCATAGCCCGAGAA---CCCCGATCCCCGACACTTTGCTTCCTCTCAGCTCCCAGGTGGATCCTGGACAGGATGCTGCAGGTGCTGCAGGAGGGGAGTCCT-GCCCCATTTATCGTCAACACAATAAAAAGGGGTCGAAGAGACCGAGAGCGCCAGAGGACGCCATGGGCTCCACATCCGCTTGGATTCCAGGAAGTAAGCCTCTAGACTTCAGGAGTAAGCAAGTCCAACCGTTTGATTTGAGCCTGTTGCTTC-TAAGAAAAGC-------GAGG-AAAAA-TCCTGAGA-CCTCCTCCCCTCGCC---CTTCATCCATTTCAGGGGACCGAGTGTCTCCACGGAACTTCACAAGGGAGGC-AAAGAGTGCACTC--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29411116 573 + 172585720 CtggcagcggtgggattcgaacccacgcccccgaagagactggagccttaatccagcgccttagaccgctcggccacgctaccGCCCGCAGGCCGTGTCACCGCTTGCACTTTC---ACCCAAGTGACTGTCGCCCCTTTCCAGTCCTTTCATTCCCATTCCCACATCGCTATAAATCCTTCCCTCGGGCCCC--TTCTTCAGCATTC---CTCGCTTCTCAGCACAGCCCGAGAA--CCCCCGATCCCCGACACTTTGCTTCCTTTTAGCTCCCAGGTGGATCCCGGACAGGATGCTGCAGGTGGTGCAGGAAGGCAATCTT-GCCCCATTCGTCATCAACACAGTGAAAAGGGGTCGAAGAGACCGAGAGCGCCAGAGGACGCCACGGGCTCCACATCCGCTTGGACTCCGGGAAGTAAGCCTCTAGACTTCAGGAATGAGCAAGTCCAACCGTTTGGTTTGAGCCTATTGCTTC-CAAGAAAAGC-------GTGG-AAAAA-TCCTGAGA-CCTCCTCCCCTCGCC---CTTCGTCCATTTCAGGGGACCGAGTGTCTCCACGGAACTTCACCAGGGAGGC-AAAGAGTGCACTC--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29071946 573 - 170955103 CtggcagcggtgggattcgaacccacgcccccgaagagactggagccttaatccagcgccttagaccgctcggccacgctaccGCCCGCAGGCTGTGTCACTGCTTGCACTTTC---ACCCAAGTGACTGTCGCCCCTTTCCAGTCCTTTCATTCCCATTCCCACATCGCTATAAATCCTTCCCTCGGGCCCC--TTCTTCAGCATTC---CTCGCTTCTCAGCACAGCCCGAGAA--CCCCCGATCCCCGACACTTTGCTTCCTTTTAGCTCCCAGGTGGATCCCGGACAGGATGCTGCAGGTGGTGCAGGAAGGCAATCTT-GCCCCATTCGTCATCAACACAGTGAAAAGGGGTCGAAGAGACCGAGAGCGCCAGAGGACGCCACGGGCTCCACATCCGCTTGGACTCCGGGAAGTAAGCCTCTAGACTTCAGGAATGAGCAAGTCCAACCGTTTGGTTTGAGCCTATTGCTTC-CAAGAAAAGC-------GTGG-AAAAA-TCCTGAGA-CCTCCTCCCCTCGCC---CTTCGTCCATTTCAGGGGACCGAGTGTCTCCACGGAACTTCACCAGGGAGGC-AAAGAGTGCACTC--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2061813 573 -   2996164 CtggcagcggtgggattcgaacccacgcccccgaagagactggagccttaatccagcgccttagaccgctcggccacgctaccGCCCGCAGGCTGTGTCACCGCTTGCACTTTC---ACCCAAGTGACTGTCGCCCCTTTCCAGTCCTTTCATTCCCATTCCCACATCGCTATAAATCCTTCCCTCGGGCCCC--TTCTTCAGCATTC---CTCGCTTCTCAGCACAGCCCGAGAA--CCCCCGATCCCCGACACTTTGCTTCCTTTTAGCTCCCAGGTGGATCCCGGACAGGATGCTGCAGGTGGTGCAGGAAGGCAATCTT-GCCCCATTCGTCATCAACACAGTGAAAAGGGGTCGAAGAGACCGAGAGCGCCAGAGGACGCCACGGGCTCCACATCCGCTTGGACTCCGGGAAGTAAGCCTCTAGACTTCAGGAATGAGCAAGTCCAACCGTTTGGTTTGAGCCTATTGCTTC-CAAGAAAAGC-------GTGG-AAAAA-TCCTGAGA-CCTCCTCCCCTCGCC---CTTCGTCCATTTCAGGGGACCGAGTGTCTCCACGGAACTTCACCAGGGAGGC-AAAGAGTGCACTC--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1924564 573 -   2157725 CtggcagcggtgggattcgaacccacgcccccgaagagactggagccttaatccagcgccttagaccgctcggccacgctaccGCCCGCAGGCTTTGTCACCGCTTGCACTTTC---ACCCAAGTGACTATCGCCCCTTTCCAGTCTTTTCATTCCCATTCCCACATCGCTATAAATCCTTCCCTCGGGCCCC--TTCTTCAGCATTC---CTCGCTTCTCAGCACAGCCCGAGAA--CCCCCGATCCCCGACACTTTGCTTCCTTTCAGCTCCCAGGTGGATCCCGGACAGGATGCTGCAGGTGGTGCAGGAAGGCAATCTT-GCCCCATTTGTCATCAACACAATGAAAAGGGGTCGAAGAGACCGAGAGCGCCAGAGGACGCCACGGGCTCCACATCCGCTTGGACTCCAGGAAGTAAGCCTCTAGACTTCAGGAATAAGCAAGTCCAACCGTTTGGTTTGAGCCTGTTGCTTC-CAAGAAAAGC-------GTGG-AAAAA-TCCTGAGA-CCTCCTCCCCTTGCC---CTTCGTCCATTTCAGGGGACCGAGTGTCTCCACGGAACTTCACAAGGGAGGC-AAAGAGTGCGCTC--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28368404 573 -  71996105 CtggcagcggtgggattcgaacccacgcccccgaagagactggagccttaatccagcgccttagaccgctcggccacgctaccGCCCGCAGGGTCTGTCGCCGCTTGCACTTTC---ACCCAAGTGACTATCGCCCCTTTCCAGTCTTTCCATTCCCATTCCCACATCGCTATAAATCCTTCCCTCGGGCCCC--TTCTTCAGCATTC---CTCGCTTCTCAGCACAGCCCGAGAA--CCCCCGATCCCCGACACTTTGCTTCCTTTCAGCTCCCAGGTGGATCCCGGACAGGATGCTGCAGGTGGTGCAGGAAGGCAATCTT-GCCCCATTTGTCATCAACACAATGAAAAGGGGTCGAAGAGACCGAGAGCGCCAGAGGACGCCACGGGCTCCACATCCGCTTGGACTCCAGGAAGTAAGCCTCTAGACTTCAGGAATAAGCAAGTCCAACCGTTTGGTTTGAGCCTGTTGCTTC-CAAGAAAAGC-------GTGG-AAAAA-TCCTGAGA-CCTCCTCCCCTCGCC---CTTCGTCCATTTCAGGGGACCGAGTGTCTCCACGGAACTTCACAAGGGAGGC-AAAGAGTGCGCTC--
i chlSab2.chr17            I 8 C 0
s manLeu1.NW_012104165v1     2058132 573 +   2316924 CtggcagcggtgggattcgaacccacgcccccgaagagactggagccttaatccagcgccttagaccgctcggccacgctaccGCCCGCAGGCTGTGTCACCGCTTGCACTTTC---ACCCAAGTGACTATCGCCCCTTTCCAGTCTTTTCATTCCCATTCCCACATCGCTATAAATCCTTCCCTCGGGCCCC--TTCTTCAGCATTC---CTCGCTTCTCAGCACAGCCCGAGAA--CCCCCGATCCCCGACACTTTGCTTCCTTTCAGCTCCCAGGTGGATCCCGGACAGGATGCTGCAGGTGGTGCAGGAAGGCAATCTT-GCCCCATTTGTCATCAACACAATGAAAAGGGGTCGAAGAGACCGAGAGCGCCAGAGGACGCCACGGGCTCCACATCCGCTTGGACTCCAGGAAGTAAGCCTCTAGACTTCAGGAATAAGCAAGTCCAACCGTTTGATTTGAGCGTGTTGCTTC-CAAGAAAAGC-------GTGG-AAAAA-TCCTGAGA-CCTCCTCCCCTTGCC---CTTCGTCCATTTCAGGGGACCGAGTGTCTCCACGGAACTTCACAAGGGAGGC-AAAGAGTGCGCTC--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1928537 573 -   3067355 CtggcagcggtgggattcgaacccacgcccccgaagagactggagccttaatccagcgccttagaccgctcggccacgctaccGCCCGCAGGTTGTGTTATCGCTTGCACTTTC---ACCCAAGTGACTGTCGCCCCTTTCCAGTTCTTTCATTCCCATTGCCACATCGCTATAAATCCTACCCTCGGGCCCC--TTCTTCAGCATTC---CTCACTTCTCAGCACAGCCCGAGAA--TCCCCGATCCCCAACACTTTGCTTCCTTGCAGCTCCCAGGTGGATCCCGGACAGGATGCTGCAGGTAGTGCAGGAAGGGAATCTT-GCCCCATTTGTCATCAACACAATGAAAAGGGGTCGAAGAGACTGAGAACGCCAGAGGACGCCATGGGCTCCACATCCACTTGGACTCCAGGAAGTAAGCCTCTAGACTTCAGGAATAAGCAAGTCCAACCGTTTGGTTTGAGGCTGTTGCTTC-CAAGAAAAGC-------GTGG-AAAAA-TCCTGAGA-CCTCCTCCCCTAGCC---CTTCGTCCTTTTCAGGGGACCGAGTGTCTCCACGGAACTTCACAGGGGAGGC-GAAGAGTGCACTC--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171454681 578 - 171630274 CtggcagcggtgggattcgaacccacgcccccgaagagactggagccttaatccagcgccttagaccgctcggccacgctaccACCCACGGAGCAAACAGCCACTCGCACCTTC---ACCCGAGTGACTGTCGCCCCTTTCCAGTCCGTTTATTCCCATTCTCACATCCCTATTAACCCTTCCGGCGGGCCCC--TTCTTCAGCGTTC---CTCGCGTCTCAGCTCAGCCGGAGAA-GCCCCTGATCCCCGACGCCTTGTTTCCTCTCAGCTCCCAGGTGGATCCTGGACAGGATGCTGCAGGCGCTGCAGGAGGGGACTCCT-GCCCCGTTTGTCACCCACACAA-GAAAAAGGGTCGCAGAGACCGAGAGCGCCAGAGGCCGCCATGGGCTCCACATCCTCCTGGACTCCAGGGAGTAAGCCTCTAGGCTTCAGGAGTAAGCAAGTCCAACCGTTTGGTTTGAACCTGTTGCTTG-CAGGAAAAAG-------GAGG-AAAGAGTCCTAAGACCCCCCTCACCTCGCCCTTCTTCATCCGTTTCAGGGGACGGGGTGTCTCCACGCAACTCCATGAGGGAGGC-AAAGAGTGCACTC--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            279755 574 -    375362 AtggcagcggtgggattcgaacccacgcccccgaagagactggagccttaatccagcgccttagaccgctcggccacgctaccACCCGCGGAGCGAGGCACCGCTGGCACCTTC---ACCCCAGTGACTGTCACCCCTTTCCAGTCCGTTTTTGCCCATTCTCACATCTCTATAAACCCTTCCCGCAGG-CCG--TTCTTCAGCATTC---CTCGCGTCTCAGCTCAGCCGGAGAA-GCCCCTGATCCCCGACGCTTTGCCTCCTCTCAGCTCCCAGGTGGATCCTGGACAGGATGCTGCAGGTGCTGCAGGAGGGGACTCCT-GCCCCGTTTGTCACCCACACAA-GAAAAAGGGTCGCAGAGACTGAGAGTGCCAGAGGGCGCCATGGGCTCCACATGCGCTTGGACTCCAGGGAGTCAGCCTCTAGGCTTCAGGAGTAAGCAAGTCCAGCTGTTTGGTTTGAGCCTGCTGCTTGTCAAGAAAAAC-------GAGG-AAAAAGTCGTAAGA-CCCCCTCCCCTCGCC---CTTCATCCCTTCCAGCGGACGGAGTGTCTCCAAGGAGCTCCATAAGGGAGGC-GAAGAGTGCACGC--
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      276979 574 -    373274 TtggcagcggtgggattcgaacccacgcccccgaagagactggagccttaatccagcgccttagaccgctcggccacgctaccGCCCGCCGAGTGCGGCACCGCTCGCACCTTC---ACCCAAGTGACCGTCGCGCCTTTCCAGTCCATTTATTCCCATTCTCACATCTCTATAAACCCTTCCCGCGGGCCCC--TTCTTCAGCATTC---CTCGCGTCTCAGCTCAGCCGGGAAA-GCCTCTGATCCCCGACGCTTTGCTTCCTCTCAGCTCCCGGGTGGATCCTGGACAGGATGCTGCAGGTGCTGCAGGAGGGGACTCCT-GCCCGGTTTGTCACCCACACAA-GAAAAAGGGTCGCTGAGACCGAGAGCGCCAGAGGACGCCATGGGCTCCACATCCGCTTGGACTCCAGGGAGTAAGCCTCTAGGCTTCAGGAGTAAGCAGGTCCAGCC-TTTGGTTTTAGCCTGTTGCTTG-TAAGAAAAAC-------GAGG-AAAAAGTCCTAAGA-CCCCCTCCCCTCGCCCTTCTTCATCCATTTCAGGGGACGGAGCGTCTCCACGGAGCTCCATACGGAAGGC---AGAGTGCACTC--
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      210546 575 -    285216 CtggcagcggtgggattcgaacccacgcccccgaagagactggagccttaatccagcgccttagaccgctcggccacgctaccACCTACGGAGCGGACCGCCGCTCGCACCTTC---ACCCAAGTGACTGTCGCCCCTTTCCAGTCCGTTTATTCCCATTCTCATATCTCTATAAACCCTTCCCGCGGGCCCC--TTCTTCAGTATTC---CTCGCGTCTCAGCTCAGCCGGAGAA-GCCCCTGATCCCCGACGCTTTGTTTCCTCTCAGCTCCCAGGTGGATCCTGGACCGGATGCTGCAGGTGCTGCAGGCGGAGACTCCT-GCCCCGTTTGTCACCCACGCAG-GAAAAAGGGTCGCAGTGACCGAGAGCGCCAGAGGACGCCAAGGGCTCCACATCCGCTTGGACTCCA-GGAGTAAGCCTCTAGGCTTCAGGAGTAAGCAAGTCCAGTCGTTTGGTTTGAGCCTGTTGCTTG-TAAGAAAAAC-------GAGG-AAAAAGTCCTAAGA-CCCCCTCACCTCGCCCTTCTTCATCCATTTCAGGGGACGGAGTGTCTCCACGGAACTCCATA-GGGAGGC-AAAGAGCGCACTC--
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1575217 485 -   2232465 TtggcagcggtgggattcgaacccacgcccccgaagagactggagccttaatccagcgccttagaccgctcggccacgctaccACCCACATACTCAACC-TTACCAGTACTTCC---TGCAAAGTTAATATCGCCCCTCTCC----------CCCTCCTTCCCACG-------AATACCCTCTCTATAGCCCCCTTTTTTCAGCATTCTCTCCGGTTCCCCACCATAGCACGAGAACCCCCCTGACCCTCAACTCATACTTTCGTCCTAAGT-CCAGGTGGTCCCTGGTCGGGACGTCGCAGGTGGTGCTGGAGGAGACTCTTAACCACGTTTGTCACCAACACAAGGAAAAGGATTCGCGCCAACGGAACGTTCCAGAGGAC-TTGTGGGTTCCACATCTGCCTAGACTCGAGG-CTTATACCCCTAGAATTCAGGAGT-------------------------------------------------------GGGG-GCAAA-TCC---GG-------------------CTTT-----------GGGTTTGAGCACCTTTGCAAAACTTTACAAGGGACGCAAAAGAATGCAATC--
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25944032 384 +  26524999 CtggcagcggtgggattcgaacccacgcccccgaagagactggagccttaatccagcgccttagaccgctcggccacgctaccGCCTG-GGCCCGGGGAGCTGCTTGCACTTCTGCGACCTGAATG--------------------------------TCCCCGCGCCgcc-----cccagcccccagccccc-----------agcc---cTCGGCTCGC----------GTGGG--GCTCCGGCCCGT---------CCTCCACCCGGCTCCCGG--------------------------------------------CG-GCCCCGCAGGTCACCGACACGCCCCGAGGGTGTGGGCGCGG-----------AGGAGCCGACACGG---------------------CAGGAAGCGAG-CTCCCCACTTCAGGCGCGAGCACGCCCGGCCCATGG---CGAGCCCCGCAGCTC-AAGGAGGAACAGAAGCAAGGG-AAGAA-TCCCGCGG-AC---------CGCA---C----------------------------------------------GGCGG-GAAGAGCGCGCTCCC
i canFam3.chr35            C 0 I 115
e dasNov3.JH561790             92833 3283 -    302817 I

a score=1714192.000000
s hg38.chr6_GL000254v2_alt    209948 176 +   4827813 ATTATTA--TTTGTCTTGTCTTCGTTTCAGAGGCGGTACATCTACGAAAGCCCTAATCATAGAGGGAAAGACTCCTCGTTCCTGGCCCAGAAATGAGATGAGAAATCTAGGGCCCCGTACAGGAAGGCCTTTCGCAAAGTCCAGACTCAATTGCCTTCGCAGCCCTTAAAGTTTCCTT
s panTro5.chr6              29197402 176 + 175400573 ATTATTA--TTTGTCTTGTCTTCGTTTCAGAGGCCGTACATCTACGAAAGCCCTAATCATAGAGGGAAATACTCCTCGTTCCTGGCCCAGAAATGAGATGAGAAATCCAGGGCCCCGTACAGGAAGGCCTTTCGCAAAGTCCAGACTCAATTGCCTTCGCAGCCCTTACAGTTTCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29431419 176 + 173848474 ATTATTA--TTTGTCTTGTCTTCGTTTCAGAGGCGGTACATCTACGAAAGCCCTAATCATAGAGGGAAATACTCCTCGTTCCTGGCCCAGAAATGAGATGAGAAATCCAGGGCCCCGTACAGGAAGGCCTTTCGCAAAGTCCAGACTCAATTGCCTTCGCAGCCCTTACAGTTTCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5232111 176 +   6154872 ATTATTA--TTTGTCTTGTCTTCGTTTCAGAGGTGGTACATCTACGAAAGCCCTAATCATAGAGGGAAAGACTGCTCGTTCCTGGCCCAGAAATGAGATGAGAAATCCAGGGCCCCGTACAGGAAGGCCTTTTGCAAAGTCCAGACTCAATTGCCTTCGCAGCCCTTAAAGTTTCCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74234795 176 + 122973662 ATTATTA--TTTGCCTTGTCTTCGCTTCAGAGGCGGTATATCTACGAAAGCCCTAATCATAGAGGGAAAGAATGCTCGTTCCTGGCCCAGAAATGAGATGAGAAATCCAGGGCCCCGTACAGGATGGACTTTCGTAAAGTCCAGACTCAGTTGCCTTCGCAGCCCTTAAAGTCTCTTT
i nomLeu3.chr1a            C 0 I 300
s rheMac8.chr4              29411689 176 + 172585720 ATTATTA--TTTGTCTTGTCTTCGTTTCAGAGGCTATACATCTGCGAAAGCCCTAATCACAGAGGGAACGACTGCTCGTTCCTGGCCCAGAAATGAGATGAGAAATCCAAGGCCCCGTACAGGAAGGACTTTTGCAAAGTCTGGACTCAACTGCCTTTGCAGCCCTTGAAGTCTCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29072519 176 - 170955103 ATTATTA--TTTGTCTTGTCTTCGTTTCAGAGGCTATACATCTGCGAAAGCCCTAATCACAGAGGGAACGACTGCTCGTTCCTGGCCCAGAAATGAGATGAGAAATCCAAGGCCCCGTACAGGAAGGACTTTTGCAAAGTCTGGACTCAACTGCCTTTGCAGCCCTTGAAGTCTCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2062386 176 -   2996164 ATTATTA--TTTGTCTTGTCTTCGTTTCAGAGGCTATACATCTGCGAAAGCCCTAATCACAGAGGGAACGACTGCTCGTTCCTGGCCCAGAAATGAGATGAGAAATCCAAGGCCCCGTACAGGAAGGACTTTTGCAAAGTCTGGACTCAACTGCCTTTGCAGCCCTTGAAGTCTCTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1925137 176 -   2157725 ATTATTA--TTTGTCTTGTCTTCGTTTCAGAGGCGATACATCTGCGAAAGCCCTAATCATAGAGGGAAAGACTGCTCGTTCCTGGCCCAGAAATGAGATGAGAAATCCAGGGCCCCGTACGGGAAGGACTTTTGCAAAGTCTGGACTCAACTGCCTTCGCAGCCCTTGAAGTCTCTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28368977 176 -  71996105 ATTATTA--TTTGTCTTGTCTTCGTTTCAGAGGCGATACATCTGCGAAAGCCCTAATCATAGAGGGAAAGACTGCTCGTTCCTGGCCCAGAAATGAGATGAGAAATCCAGGGCCCCGTACGGGAAGGACTTTTGCAAAGTCTGGACTCAACTGCCTTCGCAGCCCTTGAAGTCTCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2058705 176 +   2316924 ATTATTA--TTTGTCTTGTCTTCGTTTCAGAGGCGATACATCTGCGAAAGCCCTAATCATAGAGGGAAAGACTGCTCGTTCCTGGCCCAGAAATGAGATGAGAAATCCAGGGCCCCGTACGGGAAGGACTTTTGCAAAGTCTGGACTCAACTGCCTTCGCAGCCCTTGAAGTCTCTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1929110 176 -   3067355 ATTATTA--TTTGTCTTGTCTTCGCTTCAGAGGCGATACATCTACGAAAGCCCGAATCATAGAGGGAAAGACTGCTCGTTCCTGGCCCAGAAATGAGATGAGAAATCCAGGGCCCCGTACAGGAAGGACTTTTGCAAAGTCTGGACTCAACTGCCTTCGCAGCCCTTGAAGTCTCTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171455259 175 - 171630274 ACGGTTT--TCTATCCTGCGATCGTTTCAGAGGTGGTGCGTCTACGGAAGCCCTAATCATGCAGCCAGAGACCGCC-GTTTCTGGCCCAGAAATGGGATGAGAAATCCAGGTCCCCGCGCAGGAAGGAATTTTGCAAAGTCCAGACTCAGTTTCCTTCGCCGCCCTCAAAGTCCCTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            280329 175 -    375362 ATGGTTT--TCTGTCTTGCCTTCTTTTCAGAGGTGGTGCGTCTACGGAAGCCCTAATCATAGAGGGAGAGACTGCT-GGGTCTGGCCCAGAAATGAGTGGAGAAATCCAGGGCCCCAGGCAGGAAGGAATTTTGCAAAGTCCAGACTCAATTGTCTTCGCAGCCCTTAAAGTCCCTTC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      277553 175 -    373274 ATGGTTT--TTTGTCTTCCCTTCTTTTCAGAGGTGGTGCGTCTACGAAAGCCCTAATCATAGAGCGAGAGACTGCT-GTTTCTGGCCCAGAAATGGGCTGAGAAATTCAGGGCCCCGGGCAGGAAGGAATTTTGCAAAGTCCAGACTCAATTGCCTTCGCGGCCCTTAAAGTCCCTTC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      211121 175 -    285216 ATGCTTT--TTTGTCGTGCCTCCGTTTCAGAGGTGGTGCATCCACGGAAGCCCTAATCGTAGAGCGAGAGACTGCT-GTTTCTGGCCCAGAAACGAGCTGAGAAATCCAGGGCCCCGGGCAGGAAGGAATTTTGCAAAGTCCAGACTCAATTGCCTTCGCGGCCCTTAAAGTCCCTCC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1575702 170 -   2232465 ATTATTAAGTTTTGCTTGTCTT---TCCGAATGTGGCGCCTCTATGAAAGCCTTAACCGTAGAAAGAAAAGCTGCT-CCCCTTGGCCAATGAATGAGAAAAGAAATCTAGGGTCAGGGACCAGA----CTTTGGGAAAATCCCGGCTCAGTTGCCTTCACAGCCCCCAAAATCTCCGC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             92833 3283 -    302817 I
e canFam3.chr35             25944416 115 +  26524999 I

a score=425090.000000
s hg38.chr6_GL000254v2_alt    210124 43 +   4827813 AGGAAGGTCTGTGGGAGA-ACGAGGTTGGTTTAGGAATTGGCCC
s panTro5.chr6              29197578 43 + 175400573 AGGAAGGTCTGTGGGAGA-ACGAGGTTGGTTTAGGAATTGGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29431595 43 + 173848474 AGGAAGGTCTGTGGGAGA-ACGAGGTTGGTTTAGGAATTGGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5232287 43 +   6154872 AGGAAGGTCTGTGGGAGA-ACGAGGTTGGTTTAGGAATTGGCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74235271 43 + 122973662 aagaaGGTCTGTGGGAGA-ACGAGGTTGGTTTAGGAATTGGCCC
i nomLeu3.chr1a            I 300 C 0
s rheMac8.chr4              29411865 43 + 172585720 AGGAAGGGCTGTGGGAGA-ACGAGGTTGGTTTAGGAGTTGGCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29072695 43 - 170955103 AGGAAGGGCTGTGGGAGA-ACGAGGTTGGTTTAGGAGTTGGCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2062562 43 -   2996164 AGGAAGGGCTGTGGGAGA-ACGAGGTTGGTTTAGGAGTTGGCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1925313 43 -   2157725 AGGAAGGGCTGTGGGAGA-ACGAGGTTGGTTTAGGAGTTGGCCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28369153 43 -  71996105 AGGAAGGGCTGTGGGAGA-ACGAGGTTGGTTTAGGAGTTGGTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2058881 43 +   2316924 AGGAAGGGCTGTGGGAGA-ACGAGGTTGGTTTAGGAGTTGGCCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1929286 43 -   3067355 AGGAAGCGCTGTGGGAGA-ACGAGGTTGGTTTAGGAGTTGGCCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171455434 42 - 171630274 GGGAAGGTCTGCGGGAGA-ACGAGTTTGGTTTAGGAGTTGG-CC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            280504 42 -    375362 GGGAAGGTCTGTGGGAGA-ACGAGTTCGGTTTGGGAGTTGG-CC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      277728 42 -    373274 GGGAAGGTCTGTGGGAGA-ACGAGTTTGGTTTGGGAGCTGG-CC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      211296 42 -    285216 GGGAAGGTCTGTGGGAGA-ACGAGTTTGATTTAGGAGTTGG-CC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1575872 33 -   2232465 AGAAAAGTCTGTAGGGGAGGCGGGGTTGGCCT-----------C
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             92833 3283 -    302817 I
e canFam3.chr35             25944416 115 +  26524999 I

a score=712598.000000
s hg38.chr6_GL000254v2_alt    210167 69 +   4827813 CTGCCTTGTACTACGTAGTTTTGTCATCCAAAGTGT-----TTTAGAAGTGAATTGAATCATAGTTACGCCTTA
s panTro5.chr6              29197621 69 + 175400573 CTGCCTTGTACTACGTAGTTTTGTCATCCAAAGTGT-----TTTAGAAGTGAATTGAATCATAGTTACGCCTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29431638 69 + 173848474 CTGCCTTGTACTACGTAGTTTTGTCATCCAAAGTGT-----TTTAGAAGTGAATTGAATCATAGTTACGCCTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5232330 69 +   6154872 CTGCCTTGTACTAGGTAGTTTTGTCATCCAAAATGT-----TTTAGAAGTGAATTGAATCATAGTTACGCCTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74235314 69 + 122973662 CTGCCTTGTACTACGTAGTTTTGTCATCCAAAGTGT-----TTTAGAAGTGAATTGAATCATAGTTCCGCCTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29411908 69 + 172585720 CTGCCTTGTACTACGTAGTTTTGTCATCCAAAGTGT-----TTTAGAAGTGAATTAAATCATATTTCCACCTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29072738 69 - 170955103 CTGCCTTGTACTACGTAGTTTTGTCATCCAAAGTGT-----TTTAGAAGTGAATTAAATCATATTTCCACCTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2062605 69 -   2996164 CTGCCTTGTACTACGTAGTTTTGTCATCCAAAGTGT-----TTTAGAAGTGAATTAAATCATATTTCCACCTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1925356 69 -   2157725 CTGCCTTGTACTACGTAGTTTTGTCATCCAAAGTGT-----TTTAGAAGTGAATTAAATCATATTTCCATCTTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28369196 69 -  71996105 CTGCCTTGTACTACGTAGTTCTGTCATCCAAAGTGT-----TTTAGAAGTGAAGTAAATCCTATTTCCATCTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2058924 69 +   2316924 CTGCCTTGTACTACGTAGTTTTGTCATCCAAAGTGT-----TTTAGAAGTGAATTAAATCATATTTCCATCTTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1929329 69 -   3067355 CTGCCTTGTACTACGTAGTGTTGTCATCCAAAGTAT-----TTTAGAAGTGAATTAAATCATATTTCCACCTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171455476 69 - 171630274 CTGCCTTGTACTGCGTAGTTTTGTCATCCAAAGTGT-----TTTAGACGTGAATGAAATAATAGTTCCGCCTTA
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            280546 69 -    375362 CTGTCTTGTACTGCGTAGTTTTGTCACCCAAAGTCT-----TTTAGATGTGAATGAAGTAATAGTTCCGCCTTA
i saiBol1.JH378348         C 0 I 2280
s cebCap1.NW_016108108v1      277770 68 -    373274 GTGCCTTGTACTAAGTAGTTTTGTCATCCAAAGTG------TTTAGACGTGAATGAAGTAATAGTTCCGCCTTA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      211338 69 -    285216 CTGCCTTGTACTGCGTAGTTTTGTCATCCAAAGTGT-----TTTAGACGTGAATGAAATAATAGTTCCGCTTTA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1575905 66 -   2232465 CTTCCCTGTGCT---TGACTTTGTCAACCAAATTGT-----TTTAGACGTGAATTAAATCACAGTTCCTCTTTA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25944531 56 +  26524999 CTGCTCTGTCCTGCGCAGCTCTGGCCCCCAAACCGGGGATAACTTGGCGTGAATGG------------------
i canFam3.chr35            I 115 C 0
e dasNov3.JH561790             92833 3283 -    302817 I

a score=272143.000000
s hg38.chr6_GL000254v2_alt    210236 32 +   4827813 TTTTGAAACACTGTAATTCAGAGAACGTAAAA
s panTro5.chr6              29197690 32 + 175400573 TTTTGAAACACTGTAATTCAGAAAACGTAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29431707 32 + 173848474 TTTTGAAACACTGTAATTCAGAAAACGTAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5232399 32 +   6154872 TTTTGAAACACTGTAATTCAGAGAACGTAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74235383 32 + 122973662 TTTTGAAACATTGTAATTCAGAGAACTTAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29411977 32 + 172585720 TTTTGAAACACTGTAATTCGGATAACTTAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29072807 32 - 170955103 TTTTGAAACACTGTAATTCGGATAACTTAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2062674 32 -   2996164 TTTTGAAACACTGTAATTCGGATAACTTAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1925425 32 -   2157725 TTTTGAAACACTATAGTTCGGATAACTTAAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28369265 32 -  71996105 TTTTGAAACACTATAATTCAGATAACTTAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2058993 32 +   2316924 TTTTGAAACACTATAGTTCGGATAACTTAAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1929398 32 -   3067355 TTTTTAAACACTATAATTCAGAGAACTTAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171455546 32 - 171630274 TTTGGAAACACTGTCATTCAGAGAATTTAAAA
i calJac3.chr4             I 1 C 0
s cebCap1.NW_016108108v1      277838 32 -    373274 TTCTGAAACACTGTAATTCAGAGAATTTAAAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      211407 28 -    285216 TTTTGAAACACTGTAATTCAGAGAATTT----
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1575971 32 -   2232465 CTTTGAAACACTATGATTTGGAGAATTTAGAA
i otoGar3.GL873742         C 0 I 73
s canFam3.chr35             25944587 29 +  26524999 TTTAGAAACCC--CAGTTCGCAGACAGGAGA-
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             92833 3283 -    302817 I
e saiBol1.JH378348            280615 2280 -    375362 I

a score=136402.000000
s hg38.chr6_GL000254v2_alt    210268 23 +   4827813 CCTTATTAAAATGCCTCATAATC
s panTro5.chr6              29197722 23 + 175400573 CCCTATTAATATGCCTCATAATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29431739 23 + 173848474 CCCTATTAATATGCCTCATAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5232431 23 +   6154872 CCTTATTAATATGCCTCATAATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74235415 23 + 122973662 CCTTATTAATATGCCCCATAATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29412009 23 + 172585720 CCTTATTAATAGTCTTCATAATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29072839 23 - 170955103 CCTTATTAATAGTCTTCATAATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2062706 20 -   2996164 CC---TTAATAGTCTTCATAATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1925457 23 -   2157725 CCTTATTAATAGTCCTCATAATC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28369297 23 -  71996105 CCTTATTAATAGTCCTCATAATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2059025 23 +   2316924 CCTTATTAATAGTACTCATAATC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1929430 23 -   3067355 CCTTATTAATAGTCCTCATAATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171455578 23 - 171630274 CCAAATTAATGGTCCTCATAGTC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      277870 23 -    373274 CCGAATTAATGTCCCCCATAGTC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      211435 19 -    285216 ----ATTAATGTTCCTCATAGTC
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25944616 17 +  26524999 ---CGACACGGTTGTACATG---
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             92833 3283 -    302817 I
e saiBol1.JH378348            280615 2280 -    375362 I
e otoGar3.GL873742           1576003 73 -   2232465 I

a score=7242024.000000
s hg38.chr6_GL000254v2_alt    210291 777 +   4827813 ATCTTGGTAGAGCCGTTGGTTAAGCGGGAGAGACAGTTgcctccttagcgcagtaggcagcgcgtcagtctcataatctgaaggtcctgagttcgaacctcagagggggcaAGGCGTCTGTTTTG----------CCATTTTACTTCTTCTTGACCCAAAATGAGTAAGACAACAAAGGAAGTTGACAAAACGTTG-----TTC-----------TTTCTCTATAGAAAA---GTGTACAATATGTCTGGTAAGGG--------AAAAAAAAATC---TA---AGGACATTGCTTTGATGGAACAGAACGGGTAATT-GCTGTTTAATAGAAC---C-----ATGTTCAGTTACAAAACAGTGATTTTC-ACTAAGAATTAAATTCTCCAAAA---TTCTCATCT-CCCCTCCCGCC---------CTGCATACCAATTGGAGATAGAGCTGGTAGCATTTTCAA-ATG-TTTTTCAGATATGCTTGGCAATTGTCTTTGTTTTAACAACACCAGAGTCAAGAAACTTGCCAGTT----TTAGAGTGCTGAGATAAGAAAAAGTGGGTGGAGGGTTGTACTAGGGGTGTGGAAGGTATAGA------------ATCTAATTATCAATTACTGACTTGGTTATCTTTTACCATTCTTCTGGAATGGCTTACCACCAGGTTGCCACCAATAACATTCCATATGAAAAAAGAAAGGAAAC-AAAAAACTGACAAAAAA--CTCCCCCCTCAGTCTCATTGCATTGGACCTTTTCTCTTGCTTCCAGTCCTGTTGACTGGAT--CTA--AATCATCCAAACTACCAGATGCAGGAAGGGGT-AAAAAGAGAAACAAGAAG---TGAAGAAGATAGG
s panTro5.chr6              29197745 786 + 175400573 ATCTTGGTAGAGCCGTTGGTTAAGCGGCAGGGACAGTTgcctccttagcgcagtaggcagcgcgtcagtctcataatctgaaggtcctgagttcgaacctcagagggggcaAGGCGTCTCTTTTG----------CCATTTTA---CTTCTTGACCCAAAATGAGTAAGACAACGAAGGAAGTTGACAAAACGTTG-----TTCTTTCTCTG--TTTTCTCTATAGAAAA---GTGTACAATATGTCTGGTAAGGG------AAAAAAAAAAATC---TA---AGGACATTGCTTTGATGGAACAGAACGGGTAATT-GCTGTTTAATAGAAC---C-----ATGTTCAGTTACAAAACAGTGATTTTC-ACTAAGAATTAAATTCTCCAAAA---TTCTCATCT-CCCCTCCCGCC---------CTGCATACCAATTGGAGATAGAGCTGGTAGCATTTTCAA-ATG-TTTTTCAGATATGCTTGGCAATTGTCTTTGTTTTAAAAACACCAGAGTCAAGAAACTTACCAGTT----TTAGAGTGCTGAGATAAGAAAAAGTGGGTGGAGGGTTGTACTAGGGGTGTGGAAGGTATAGA------------ATCTAATTATCAATTACTGACTTGGTTATCTTTTACCATTCTTCTGGAATGGCTTACCACCAGGTTGCCACCAATAACATTCCATATGAAAAAAGAAAGGAAAC-AAAAAACTGACAAAAAA--CTCCCCCCTCAGTCTCATTGCATTGGACCTTTTCTCTTGCTTCCAGTCCTGTTGACTGGAT--CTA--AATCATCCAAACTACCAGATGCAGGAAGGGGTAAAAAAGAGAAACAAGAAG---TGAAGAAGATAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29431762 783 + 173848474 ATCTTGGTAGAGCCGTTGGTTAAGCGGAAGAGACAGTTgcctccttagcgcagtaggcagcgcgtcagtctcataatctgaaggtcctgagttcgaacctcagagggggcaAGGCGTCTCTTTTG----------CCATTTTA---CTTCTTGACCCAAAATGAGTAAGACAACGAAGGAAGTCGACAAAACGTTG-----TTCTTTCTCTG--TTTTCTCTATAGAAAA---GTGTACAATATGTCTGGTAAGGG---------AAAAAAAATC---TA---AGGACATTGCTTTGATGGAACAGAACGGGTAATT-GCTGTTTAATAGAAC---C-----ATGTTCAGTTACAAAACAGTGATTTTC-ACTAAGAATTAAATTCTCCAAAA---TTCTCATCT-CCCCTCCCGCC---------CTGCATACCAATTGGAGATAGAGCTGGTAGCATTTTCAA-ATG-TTTTTCAGATATGCTTGGCAATTGTCTTTGTTTTAAAAACACCAGAGTCAAGAAACTTACCAGTT----TTAGAGTGCTGAGATAAGAAAAAGTGGGTGGAGGGTTGTACTAGGGGTGTGGAAGGTATAGA------------ATCTAATTATCAATTACTGACTTGGTTATCTTTTACCATTCTTCTGGAATGGCTTACCACCAGGTTGCCACCAATAACATTCCATATGAAAAAAGAAAGGAAAC-AAAAAACTGACAAAAAA--CTCCCCCCTCAGTCTCATTGCATTGGACCTTTTATCTTGCTTCCAGTCCTGTTGACTGGAT--CTA--AATCATCCAAACTACCAGATGCAGGAAGGGGTAAAAAAGAGAAACAAGAAG---TGAAGAAGATAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5232454 788 +   6154872 ATCTTGGTAGAGCCGTTGATTAACGGGTAGCGACAGTTgcctccttagcgcagtaggcagcgcgtcagtctcataatctgaaggtcctgagttcgaacctcagagggggcaAGGCGTCTGTTTTG----------CCATTTTACTTCTTCTTGACCCAAAATGAGTAAGACAACGAAGGAAGTTGACAACACGTTG-----TTCCTTCTCTG--CTTTCTCTGTAGAAAA---GTGTACAATATGTCTGGTAAGGG-------AAAAAAAAAATC---TA---AGGACATTGCTTTGATGGAACAGAACGGGTAATT-GCTGTTTAATAGAAC---C-----ATGTTCAGTTACAAAACAGTGATTTTC-ACTAAGAATTAAATTCTCCAAAA---TTCTCATCTCCCCCTCCCGCC---------CTGCATACCAATTGGAGATAGAGCTGGTAGCATTTTCAA-ATG-TTTTTCAGATATGCTTTGCAATTGTCTTTGTTTTAAAAACACCAGAGTCAAGAAACTTACCAGTT----TTAGAGTGCTGAGATAAGAAAAAGTGGGTGGAGGGTTGTACTAGGTGTGCGGAAGGTATAGA------------ATCTAATTATCAATTACTGACTTGGTTATCTTTTACCATTCTTCTGGAATGGCTTACCACCAGGTTGCCACCAATAACATTCCATATGAAAAAAGAAAGGAAAC-AAAAAACTGACAAAAAA--CTCCCCCCTCAGTCTCATTGCATTGGACCTTTTCTCTTGCTTCCAGTCCTGTTGACTGGAT--CTA--AATCATCCAAACTACCAGATGCAGGAAGGGGT-AAAAAGAGAAACAAGAAG---TGAAGAAGATAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74235438 787 + 122973662 ATGTTGGTAGAGCTGATGCTTAAACGGTAAAAGCAGTTgcctccttagcgcagtaggcagcgcgtcagtctcataatctgaaggtcctgagttcgaacctcagagggggcaACGCGTCTCTTTTG----------CCATTTTTCTTCCTCTTGACCCAAAATGAGTAAGACAACGAAGGAAGTTGACAAATCCTTG-----TTCTTTCTCTG--CTTTCTCTGTAGAAAA---GTGTACAATATGTCCGGTAAGTaaaaaaaaaaaaaaaaaaaC---TA---AGGACCTTGCTTTGATGGAACAGAACGGGTAATT-GCTGTTTAATAGAAC---C-----ATGTTCAGTTACAAAATAGTGATTTTC-ACTAAGAATTAAATTCTCCAAAA---TTCTCATCT-CCCCTCCCGCC---------CTGCATACCAATTGGAGATAGAGCTGGTAGCATTTTCAA-ATG-TTTTTCAGATATGCTTGGCAATTGTCTTTGTTTTAAAAACACCAGAGTCAAGAGACTTACCAGTT----TTAGAGTGCTGAGATAAGAAAGAGTGGGTGGAGGGTTGTACTAGGGGTGTGGAAGGTATAGA------------ATCTAATTATCAATTACTGACTTGGTTATCTTTTACTATTCTTCTGGAATGGCTTACCACCACGTTGCCACCAATAACATTCCATATGAAAAAAGAAACGAA------------ACAAAAAA--CTCCCCCCTCAATCTCATTGCATTGGACCTTTTCTCTTGCTTCCAGTCCTGTTGACTGGATGACTGGTAGTCATCCAAACTACCAGATGCAGGAAGGGGT-AAAAAGAGAAACAAGAAG---TGAAGAAGATACG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29412032 791 + 172585720 ACGTTGGTAAAGCCCTTGCTTACACACGGAAGACAGTTgcctccttagcgcagtaggcagcgcgtcagtctcataatctgaaggtcctgagttcgaacctcagagggggcaACGCATCCGTTTTG----------CCATTTTTCTTCCTCTTGACCCAAAGTGAGTAAGACAACGAAGGAAGTTGGCAAATCCTTG-----TTCTTACTCCG--CTTTCTCTGTAGAAAA---GAGTACAATATGTCTGGTAAGGA-----AAAAAGAAAAAATC---TA---AGGAAATTGCTTTGATGGAACAGAACGGGTAATT-GCTGCTTAATAGAAC---C-----ATGTTCAGTTACAAAACAGTGATTTTC-ATTAAGAA-TTAAATCTCCAAAATTCTTCTCATCT-CCCCTCCCACC---------CTGCATACCCATTGGAGATAGAGGTGGTAGCATTTTCAA-ATG-TTTTTCAGATATGCTTGGCATTTGTCTTTGTTTTAAAAACACCAGAGTCAAGAAACTTACCAGTT----TTAGAGTGCTAAGAGAAGAAAGAGTGGGTGGAGGGTTGTACTAGGGGTGTGGAAGGTATAGA------------ATCTAATTATCAATTACTGACTTGGTTATCTTTTACCATTCTTCTGGAATGGCTTACGACCAGGTTGCCACCAATAACATTCCATATGAAAAAAGAAAGGAAAC-AAAAAGCTAACAAAAAA--CTACCCCCTCAGTCTCATTGCATTGGACCTTTTCTCTTGCTTCCAGTCCTGTTGACTGGAT--CGA--AGTCATCCAAACTACCAGATGCAGGAAGGGGT-AAAAAGGGAAACAAGAAG---TGAAGAAGACAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29072862 791 - 170955103 ACGTTGGTAGAGCCCTTGCTTACACACGGAAGACAGTTgcctccttagcgcagtaggcagcgcgtcagtctcataatctgaaggtcctgagttcgaacctcagagggggcaACGCATCCGTTTTG----------CCATTTTTCTTCCTCTTGACCCAAAATGAGTAAGACAACGAAGGAAGTTGGCAAATCCTTG-----TTCTTACTCCG--CTTTCTCTGTAGAAAA---GAGTACAATATGTCTGGTAAGGA-----AAAAAGAAAAAATC---TA---AGGAAATTGCTTTGATGGAACAGAACGGGTAATT-GCTGCTTAATAGAAC---C-----ATGTTCAGTTACAAAACAGTGATTTTC-ATTAAGAA-TTAAATCTCCAAAATTCTTCTCATCT-CCCCTCCCGCC---------CTGCATACCCATTGGAGATAGAGCTGGTAGCATTTTCAA-ATG-TTTTTCAGATATGCTTGGCATTTGTCTTTGTTTTAAAAACACCAGAGTCAAGAAACTTACCAGTT----TTAGAGTGCTAAGAGAAGAAAGAGTGGGTGGAGGGTTGTACTAGGGGTGTGGAAGGTATAGA------------ATCTAATTATCAATTACTGACTTGGTTATCTTTTACCATTCTTCTGGAATGGCTTACGACCAGGTTGCCACCAATAACATTCCATATGAAAAAAGAAAGGAAAC-AAAAAGCTAACAAAAAA--CTACCCCCTCAGTCTCATTGCATTGGACCTTTTCTCTTGCTTCCAGTCCTGTTGACTGGAT--CGA--AGTCATCCAAACTACCAGATGCAGGAAGGGGT-AAAAAGGGAAACAAGAAG---TGAAGAAGACAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2062726 791 -   2996164 ACGTTGGTAGAGCCCTTGCTTACACACGGGAGACAGTTgcctccttagcgcagtaggcagcgcgtcagtctcataatctgaaggtcctgagttcgaacctcagagggggcaACGCATCCGTTTTG----------CCATTTTTCTTCCTCTTGACCCAAAATGAGTAAGACAACGAAGGAAGTTGGCAAATCCTTG-----TTCTTACTCCG--CTTTCTCTGTAGAAAA---GAGTACAATATGTCTGGTAAGGA-----AAAAAGAAAAAATC---TA---AGGAAATTGCTTTGATGGAACAGAACGGGTAATT-GCTGCTTAATAGAAC---C-----ATGTTCAGTTACAAAACAGTGATTTTC-ATTAAGAA-TTAAATCTCCAAAATTCTTCTCATCT-CCCCTCCCGCC---------CTGCATACCCATTGGAGATAGAGCTGGTAGCATTTTCAA-ATG-TTTTTCAGATAAGCTTGGCATTTGTCTTTGTTTTTAAAACACCAGAGTCAAGAAACTTACCAGTT----TTAGAGTGCTAAGAGAAGAAAGAGTGGGTGGAGGGTTGTACTAGGGGTGTGGAAGGTATAGA------------ATCTAATTATCAATTACTGACTTGGTTATCTTTTACCATTCTTCTGGAATGGCTTACGACCAGGTTGCCACCAATAACATTCCATATGAAAAAAGAAAGGAAAC-AAAAAGCTAACGAAAAA--CTACCCCCTCAGTCTCATTGCATTGGACCTTTTCTCTTGCTTCCAGTCCTGTTGACTGGAT--CGA--AGTCATCCAAACTACCAGATGCAGGAAGGGGT-AAAAAGGGAAACAAGAAG---TGAAGAAGACAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1925480 792 -   2157725 ACGTTGGTAGAGTCCTTGCTTAAACCATAAAGACAGTTgcctccttagcgcagtaggcagcgcgtcagtctcataatctgaaggtcctgagttcgaacctcagagggggcaACGCATCTGTTTTG----------CCATTTTTCTTCCTCTTGACCCAAAATGAGTAAGACAACGAAGGAAGTTGGCAAATCCTTG-----TTCTTACTCCG--CTTTCTCTGTAGAAAA---GAGTACAATATGTCTGGTAAGGA-----AAAAAGAAAAAATC---TA---AGGAAATTGCTTTGATGGAACAGAACGGTTAATT-GCTGCTTAATAGAAC---C-----ATGTTCCGTTACAAAACAGTGATTTTC-ATTAAGAATTTAATTCTCCAAAATTCTTCTCATCT-CCCCTCCCTCC---------CTGCATACCAATTGGAGATAGAGCTGGTAGCATTTTCAA-ATG-TTTTTCAGATATGCTTGGCGTTTGTCTTTGTTTTAAAAACACCAGAGTCAAGAAACTTACCAGTT----TTAGAGTACTAAGAGAAGAAAGAGTGGGTGGAGGGTTGTACTAGGGGTGTGGAAGGTATAGA------------AGCTAATTATCAATTACTGACTTGGTTATCTTTTACCATTCTTCTGGAACGGCTTACCACCAGGTTGCCACCAATAACATTCCATATGAAAAAAGAAACGAAAC-AAAAAGCTAACAAAAAA--CTACCCCCTCAGTCTCATTGCATTGGACCTTTTCTCTTGCTTCCAGTCCTGTTGACTAGAT--CTA--AGTCATCCAAACTACCAGATGCAGGAAAAGGT-AAAAAGAGAAACAAGAAG---TGAAGAAGACAAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28369320 787 -  71996105 ACGTTGGTAGAGCCCTTGCTTAGATGAAAAAGACAGTTgcctccttagcgcagtaggcagcgcgtcagtctcataatctgaaggtcctgagttcgaacctcagagggggcaACGCATCTGTTTTG----------CCAATTTTCTTCCTCTTGACCCAAAATGAGTAAGACAACGAAGGAAGTTGGCAAATCCTTG-----TTCTTACTCCG--CTTTCTCTGTACAAAA---GAGTACAATATGTCTGGTAAGGA-----A-----AAAAAATC---TA---AGGAAATTGCTTTGATGGAACAGAACGGGTAATT-GCTGCTTAATAGAAC---C-----ATGTTCAGTTACAAAATAGTGATTTTC-ATTAAGAATTAGATTCTCCAAAATTCTTCTCATCT-CTCCTCCCGCC---------CTGCATACCCATTGGAGATAGAGCTGGTAGCATTTTCAA-ATG-TTTTTCAGATACGCTTGGCATTTGTCTTTGTTTTAAAAACACCAGAGTCAAGAAACTTACCAGTT----TTAGAGTGCTAAGAGAAGAAAGAGTGGGTGGAGGCTTGTACTAGGGGTGTAGAAGGTATAGA------------ATCTAATTATCAATTACTGACTTGGTTATCTTTTCCCATTCTTCTGGAATGGCTTACCACCAGGTTGCCACCAATAACATTCCATATGAAAAAAGAAAGGAAAC-AAAAAGCTAACAAAAAA--CTACCCCCTCAGTCTCATTGCATTGGACATTTTCTCTTGCTTCCAGTCCTGTTGACTGGAT--CTG--AGTCATCCAAATTACCAGATGCAGGAAGGGGT-AAAAAGAGAAACAAGAAG---TGAAGAAGACAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2059048 792 +   2316924 ACGTTGGTAGAGTCCTTGCTTAAACCATAAAGACGGTTgcctccttagcgcagtaggcagcgcgtcagtctcataatctgaaggtcctgagttcgaacctcagagggggcaACGCATCTGTTTTG----------CCACTTTTCTTCCTCTTGACCCAAAATGAGTAAGACAACGAAGGAAGTTGGCAAATCCTTG-----TTCTTACTCCG--CTTTCTCTGTAGAAAA---GAGTACAATATGTCTGGTAAGGA-----AAAAAGAAAAAATC---TA---AGGAAATTGCTTTGATGGAACAGAACGGTTAATT-GCTGCTTAATAGAAC---C-----ATGTTCAGTTACACAACAGTGATTTTC-ATTAAGAATTTAATTCTCCAAAATTCTTCTCATCT-CCCCTCCCTCC---------CTGCATACCAATTGGAGATAGAGCTGGTAGCATTTTCAA-ATG-TTTTTCAGATATGCTTGGCGTTTGTCTTTGTTTTAAAAACACCAGAGTCAAGAAACTTACCAGTT----TTAGAGTACTAAGAGAAGAAAGAGTGGGTGGAGGGTTGTACTAGGGGTGTGGAAGGTATAGA------------AGCTAATTATCAATTACTGACTTGGTTATCTTTTACCATTCTTCTGGAATGGCTTACCACCAGGTTGCCACCAATAACATTCCATATGAAAAAAGAAAGAAAAC-AAAAAGCTAACAAAAAA--CTACCCCCTCAGTCTCATTGCATTGGACCTTTTCTCTTGCTTCCAGTCCTGTTGACTAGAT--CTA--AGTCATCCAAACTACCAGATGCAGGAAGCGAT-AAAAAGAGAAACAAGAAG---TGAAGAAGACAAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1929453 793 -   3067355 ACGTTGGTAGAGCCCTTGCTTACACAAACTAGACAGTTgcctccttagcgcagtaggcagcgcgtcagtctcataatctgaaggtcctgagttcgaacctccgagggggcaACGTCTCCGTTTTG----------CCATTTTTCTTCTTCTTTACCCAAAATGAGTAAGACAACGAAGGAAGCTGGAAAATCCTTG-----TTCTTACTCCA--CTTTCTCTGTAGAAAA---GAGTACAATATGTCTGGTAAGGA-----AAAAAGAAAAAATC---TA---AGGAAATTGCTTTGATGGAACAGAATGGGTAATT-GCTGCTTCATAGAAC---C-----ATGTTCAGTTACAAAACAGTGATTTTT-ATTAAGACTTAAATTCTCCAAAATTCTTCTCATCT-CCCCTCCCGCC---------CTGCATACCAATTGGAGATAGAGCTGGTAGCATTTTCAA-ATGTTTTTTCAGATATGCTTGGCATTTGTCTTTGTTTTAAAAACACCAGAGTCAAGAAACTTACCAGTT----TTAGAGTGCTAAGAGAAGAAAGAGTGGGTGGAGGGTTGTACTAGGGATGTGGAAGGTATAGA------------ATCTAATTATCCATTACTGACTTGGTTATCTTTTACCATTTTTCTGGAATGGTTTACCACCAGGTTGCCACCAATAACACTCCATATGAAAAAAGAAAGGAAAC-AAAAAGCTAACAAAAAA--CTACCCCCTCAATCTCATTGCATTGAACCTTTTCTCTTGCTTCCAGTCCTGTTGACTGGAT--CTA--AGTCATCCAAACTACCAGATGCAGGAAGGGGT-AAAAAGAGAAACAAGAAG---TGAAGAAGACAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171455601 783 - 171630274 ATGTTGGTAGAGCCCTTGGCTAAGTGGGAGGGACAGTTgcctccttagcgcagtaggcagcgcgtcagtctcataatctgaaggtcctgagttcgaacctcagagggggcaACGTGTCTGTTTTG----------CCATTTTTCTTCCCCTTGTTGCAAAATTAGTAAGACAACAAAGGAAGCTGACAAATCCTTG-----TTTTTTCTGTG--CTTTTGCTGTAGAAAA---GCATACAAGATACCTGGTAAGAA-----------AAAAAAAAAACTA---AGGAAATTGCTCTGATGAAACAGAAAGGGTAATT-GCTGTTTAATAGAAC---T-----ATGTTCAGTTACAAAACAGTGATTTTC-ACTAAGAATTAAATTCTCCAAAATTCTTCTCGTCT-CCCCTCCCGCC---------CCGCCTACCAGTTGGAGATAGAGCTGATAGCATTTTCAA-CTT-TTTTTCAGATATGTTTGGCAATTGTCTTTGTTTTAAAAACGCCAGGGTCAAGAAACTTACCCGTT----TTAGGGTGCTGAGAGGAGGAGGAGTGGGTGGAGAGTTGCACTAGGGGTGTGGAAGGTATAGGATAGTGC---TTATCTAATTATCGATGACTGACTTCATTATCTTTTACAATTCTTCCTGAATGGCTTGCCACCAGGTTGCCACCAATAACATTCCATATGAAAAAAGAAAGAAACC-------------AAAAACACTCCCTCGTCGTTCTCATTGCATTGGAAC-TTTCTCTCGCTTCCAGTGCTCTTGACTGGAT--CCA--AGTTATCCAAACTACCAGATGCAGGAAGAAGT--AAAAGGCAAACAAAGAG---T---GAAGACAGG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      277893 796 -    373274 ATGTTGGTAGAGCCCTTGGTTAAGTGGGAGGGACAGTTgcctccttagcgcagtaggcagcgcgtcagtctcataatctgaaggtcctgagttcgaacctcagagggggcaACGTATCTGTTTTG----------CCGTTTTTCTTCCCCTTGATCCAAAATGAGTAAGACAACGACGGAAGCTGACAAATCCCTGTTTGTTTTTTTCTGTG--CTTTCTCTGTAGAAAA---GCATACAATATACC-GGTAAGAA-----------AAAAAATA---TA---AGGAAATTCGTTTGATGAAACAGAAAGGGTAATT-GCTGTTTAATAGAAC---T-----ATGTTCAGTTACAAAACAGTGGTTTTC-ACTAAGAATTAAATTCTCCAAAATTATTCTCGTCT-CCCCTCTCGTC---------CCACATACCAGTTGGAGATAGAGCTGATAGCATTTTCAATTTT-TTTTTCAGATATGCTTGGCAATTGTCTTTGTTTTAAAAACATCAGGGTCAAGAAACTTACCTGTT----TTAGGGTGCTGA---GAGAAGGAGTGGGTGGAGGGTTGTATTAGGGGTGTGGAAGGTATAGAATAGGGC---TTATCTAATTATCAATTACTGATTTGGTTATCTTTTACCATTCTTCTGGAATGGCTTACCACCAGGTTGCCACCAATAACATTCCACATGAAAAAAGAAAGAAACCAAAAAAACTAACGAAAAACTCTCCCTCCTCATTCTTATTGCATTGGAACTTTTCTCTCGCTTCCAGTGCTCTTGACTGGAT--CTA--AGTTATCCAAACTACCAGATGCAGGAAGGGGC--AAAAGGCAAACAAAAAG---C---GAAGACAGG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      211454 790 -    285216 ACGTTGGTAGAGCCCTTGGGTTAGTGGGAGGGACAGTTgcctccttagcgcagtaggcagcgcgtcagtctcataatctgaaggtcctgagttcgaacctcagagggggcaACGTGTCTGTTTTG----------CCATTTTTCTTCCCCTTGATCCAAAATGAGTAAGACAACAAAGGAAGGTGACAAATCCT-------TTTTTTCTGTG--CTTTCTCTGTAGAAAA---GCATACAATATACCTGGTAAGAA-----------AAAAAATC---TA---AGGGAATTGCTTTGATGAAACAGAAAGGGTAATT-GCTGTTTAATAGAAC---T-----ATGTTCAGTTACAAAACAGTGATTTTC-GCTAAGAATTAAATTCTCCAAAATTCTTCTGGTCT-CCCCTCCCGCC---------CTGCACACCAGTTGGACATAGAGCTGATAGCATTTTCAA-TTT-TTTTTCAGATATGCTTTGCAATTGTCTTTGTTTTAAAAACACCAGGGTCAAGAAACTTACCCGTT----TTAGGGTGCTGAGAGAAGGAGGAGTGGGTGGAGGGTTGTACTAGGGGTGTGGAAGGTATAGAATAGTGC---TTATCTAATTAGCAATTACTGACTTGGTTATCTTTTACCATTCTTCTGGAATGGCTTACCACCAGGTTGCCACCAATCATATTCCATATGGAAGAAGAAAGAAACCAAAAAAACTAACAAAAAA--CTCCCTCCTCATTCTCTTTGCATTGGAACTTTTCTCTCGCTTCCAGTGCTCTTGACTGGAT--CTA--AGTTATCCAAACTACCAGATGCAGGAAAGGGT--AAAGGGCAAACAAAAAA---T---GAAGACGGG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1576076 794 -   2232465 CTATTGGTAAATATTCCATGCAAGCAATCTAGCCAGTTgcctccttagcgcagtaggcagcgcgtcagtctcataatctgaaggtcctgagttcgatcctcagagggggcagcaGGCTTATTTTGTGTGTGAGTTTCCTTTTCTTTTGTCCTAATCCAAAAGAAGCAAGACAGTGAAAGATATTGACAAATTTTTG-----TTTTTTCTCTGTATTTTTCCCCTAGAAAAACTGTGCATAATATGTGTTATTAAAA------------AAAAATC---CA---AGGAAATATCTTTAATGAGTCTGAATGGGTAATTGGCTATTTAACAGAGC---CACGTAATGTTCAGTTATGAAACAGTGCTTTTC-ACTATGAATTAAA-TATCCAAAATTCTTCTGCTCTTCTCCCCCCGCCCCCTTTTTTCCTCATACTCTTTGGATATTGAACTGGAAGATATTTCAA-ATG-CTTTTCACATATGCTTGGCAATTGTCTTTTTTGTAAAAACACCGGGGTCAAGAACCCTGCTGGGTCTAGCTAGGGTGCTGAGAGAGGGAAGAGAGTATGGGGTGTTGTACTGAGGGTGGAGAAGGTATAGGATGGTGC--AATATATTTTTATTAATTACTGACTTGGTCATCTTTTACCATTTTT----------------CCAGGTTGCC----ATGACATCCTATATGGAAaacaacaacaaca----------acaacaaA----ACTTCCCCTGTCT-------GTGTACCTTTTTTCATGTTTCCAGGGCTGTTGACTGAAT--GTA--AGTTGTCTAAACTACAAGATGCAGAAAGAGAT-AAAAGGAGAAATAAGAAGAGATAAACAAGACAAG
i otoGar3.GL873742         I 73 C 0
s canFam3.chr35             25944633 641 +  26524999 CTCTTGGTAGGTGTGCTGGGGAGCGGGCACACGCGGCCgcctccttagcgcagtaggcagcgcgtcagtctcataatctgaaggtcctgagttcgagcctcagagggggcaacaCGT------------------------------------------------------------------------------------TTTTCCGTCTG--CTTTCAATGT--AAAG---GTGTACAATATATCTTTTATTTT-----------------TC---GATGGAGGAAATTGCT-TGAGAAGACTGACGGGCAATTT-GCTGTTTAACAGAACGTGT-----ATGTTCGGTTACAAAATAGTGATTCTCTACTAAGCATTCAATACTCCAAAATCCTTCGGGGCC-TTTCTCATGCC------------------AATTGCAGATACAGCTAGTAGATTTTCAAA-ATG-TTCTTCAGATAGGCTTGG-AGTTGTTT----------GACACCAGGGTCAAGAAACTTACTGGCT----CTGGGGTGCTGAGAGGAGGAG----GGACAAACCGTT----TGGGGATGGGGAGACTGTAGGGTGGTGCACAATACATTTCTATTAATTACTGA-TTGGTCCTCTCTTACCATTCTTCTTAATTG--TTACCACCAGCT---CACCAATGACATCCTATGTGTAA--------------------------AAAAA--TGGCCCCCTCAGTCTTGTTACATTGTCCTTCTTTTCCTGCCTCTAGTACTGTTTACTGGAC-ATTA--AGTCACC----------------------------AAAGAGAAACAAGAAG---TGAACAA-ATAGG
i canFam3.chr35            C 0 I 2790
e dasNov3.JH561790             92833 3283 -    302817 I
e saiBol1.JH378348            280615 2280 -    375362 I

a score=751693.000000
s hg38.chr6_GL000254v2_alt    211068 84 +   4827813 CTGATATTTACAGTCAAGAT-GAGCCCCTGACTCAAATAATAATGAGCAAGACTGATCATTAATGTCCTGCTCTTGAGT-CCTACT
s panTro5.chr6              29198531 84 + 175400573 CTGATATTTACAGTCAAGAT-GAGCCCCTGACTCAAATAATAATGAGCAAGACTGATCATTAATGTCCTGCTCTTGAGT-CCTACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29432545 84 + 173848474 CTGATATTTACAGTCAAGAT-GAGCCCCTGACTCAAATAATAATGAGCAAGACTGATCATTAATGTCCTGCTCTTGAGT-CCTACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5233242 84 +   6154872 CTGATATTTACAGTCAAGAT-GAGCCCCTGACTCAAATAATAATGAGCAAGACTGATCATTAATGTCCTGTTCTTGAGT-CCTACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74236225 84 + 122973662 CTGATATTTACAGTCAAGAT-GAGCCCCTGACTCAAATAATAATGAGCAAGACTGATAATTAATGTCCTGCTCTTGAGT-CCTACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29412823 80 + 172585720 CTGATATTTACAGCCAAGAT-GAGCCCCTAACTCAAATAGTAATGAACAAGACTGA----CAATGTGCTGCTCTTGAGT-GCTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29073653 80 - 170955103 CTGATATTTACAGCCAAGAT-GAGCCCCTAACTCAAATAGTAATGAACAAGACTGA----TAATGTGCTGCTCTTGAGT-CCTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2063517 80 -   2996164 CTGATATTTACAGCCAAGAT-GAGCCCCTAACTCAAATAGTAATGAACAAGACTGA----TAATGTGCTGCTCTTGAGT-CCTCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1926272 84 -   2157725 CTGATATTTACAGTCAAGAT-GAGCCCCTAACTCAAATAGTAACGAACAAGACTGATAATTAATGTGCTGCTCTTGAGT-CCTACT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28370107 84 -  71996105 CTGATATTTACAGTCAAGAT-GAGCCCCTAACTCAAATAGTAATGAACAAGACTGATAATTAATGTGCTGCTCTTGAGT-CCTACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2059840 84 +   2316924 CTGATATTTACAGTCAAGAT-GAGCCCCTAACTCAAATAGTAATGAACAAGACTGATAATTAATGTGCTGCTCTTGAGT-CCTACT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1930246 84 -   3067355 CTGATATTTACAGTCAAGAT-GAGCCCCTAACTCAAATAGTAATGAACAAGACTGATAATTAATGTGCTGCTCTTGAGT-CCTACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171456384 84 - 171630274 TTGATATTCACAGTTAAGAT-GAACCGCTGACTCAAGTAGTAGTGAGCAAGACTGATAATTCATGTCCTGCTCTTGAGT-CCTACT
i calJac3.chr4             C 0 I 19
s cebCap1.NW_016108108v1      278689 84 -    373274 CTGATATTTACAGTTAAGAT-AAACCCCTGACTCAAGTAATAATGAACAAGACTGATAATTAATGTTCTGCTCTTGAGT-CCTACT
i cebCap1.NW_016108108v1   C 0 I 983
s aotNan1.NW_018494050v1      212244 80 -    285216 CTGATATTTACGGTTAAGAT-GAACCCCTGACTCAAGTAATAATGAACAAGACTGATA----ATGTCCTGCTTTTGAGT-CCTACT
i aotNan1.NW_018494050v1   C 0 I 690
s otoGar3.GL873742           1576870 86 -   2232465 CTGATATTTAGAGTCAAGATGGAGTCCTTAAATCAAACAATAGTGAAAAAAACTAATCTTCCATATCATGCTCttgagcacctacg
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             92833 3283 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I
e saiBol1.JH378348            280615 2280 -    375362 I

a score=204769.000000
s hg38.chr6_GL000254v2_alt    211152 30 +   4827813 ------------TTGTTCCAAGCTGTGTTCCtattaatccat
s panTro5.chr6              29198615 30 + 175400573 ------------TTGTTCCAAGCTGTGTTCCtattaatccat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29432629 30 + 173848474 ------------TTGTTCCAAGCTGTGTTCCtattaatccat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5233326 30 +   6154872 ------------TTGTTCCAAGCTGTGTTCCtattaatccat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74236309 30 + 122973662 ------------TTGTTCAAAGCTATGTTCCtattaatccat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29412903 30 + 172585720 ------------TTGTTCAAAGCTATGTTCAtattaatccat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29073733 30 - 170955103 ------------TTGTTCAAAGCTATGTTCAtattaatccat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2063597 30 -   2996164 ------------TTGTTCAAAGCTATGTTCAtattaatccat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1926356 30 -   2157725 ------------TTGTTCAAAGCTGTGTTCCtattaatccat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28370191 30 -  71996105 ------------TTGTTCAAAGCTGTGTTCCtattaatccat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2059924 30 +   2316924 ------------TTGTTCAAAGCTGTGTTCCtattaatccat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1930330 30 -   3067355 ------------TTGTTCAAAGCTGTGTTCCtattaatccat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171456487 30 - 171630274 ------------TAGTTCAAAGCTGTGTTCCTATTAGTCCAT
i calJac3.chr4             I 19 I 312
s otoGar3.GL873742           1576956 42 -   2232465 atgtgccagacactattagaagttgtggCTCTGtaagtctat
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             92833 3283 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I
e saiBol1.JH378348            280615 2280 -    375362 I
e aotNan1.NW_018494050v1      212324 690 -    285216 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I

a score=9555.000000
s hg38.chr6_GL000254v2_alt    211182 1 +   4827813 t
s panTro5.chr6              29198645 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29432659 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5233356 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74236339 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29412933 1 + 172585720 t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29073763 1 - 170955103 t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2063627 1 -   2996164 t
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1926386 1 -   2157725 t
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28370221 1 -  71996105 t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2059954 1 +   2316924 t
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1930360 1 -   3067355 t
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171456829 1 - 171630274 T
i calJac3.chr4             I 312 C 0
s saiBol1.JH378348            282895 1 -    375362 T
i saiBol1.JH378348         I 2280 C 0
s otoGar3.GL873742           1576998 1 -   2232465 t
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             92833 3283 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I
e aotNan1.NW_018494050v1      212324 690 -    285216 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I

a score=3218497.000000
s hg38.chr6_GL000254v2_alt    211183 362 +   4827813 ccctctcagctttaaaatcacccttatatactttgttttgtgacattggggct-gggcgcctgcaaatgatatttcccaaactcctttgcccattggcttcctcttgtgttctgtcaataagaggaaccagaaagagactagaaagcaagaggagagaagcaggggctgc-tttctaaattttgt--------tcttcctgtcagg---------tcactccaacaatg---------------------GCAGTTGAATCCCATCTCTATTTGTTCTCTTCATGCATTCC-AGAATGTCTCACTGTCCATTACAT-AAGTA-AGTAGTAGTCCAGCTGCAGC--------------------GCGTCCTCTTTAGCACTCCAGGATGCCTTTCCTCAGTGGTCTcaacctcttcctttttgttc
s panTro5.chr6              29198646 361 + 175400573 ccctctcagctttaaaatcacccctatatactttgttttgtgacattggggct-gggtgcctgcaaatgatatttcccaaactcctttgcccattggcttcctcttgtgttctgtcaataagaggaaccagaaagagactagaaagcaagaggagagaagcaggggctgc-tttctaaattttgt--------tcttcctgtcagg---------tcactccaacaatg---------------------GCA-TTGAGTCCCATCTCTATTTGTTCTCTTCATGCATTCC-AGAATGTCTCACTGTCCATTACAT-AAGTA-AGTAGTAGTCCAGCTGCAGC--------------------GCGTCCTCTTTAGCACTCCGGGATGCCTTTCCTCAGTGGTCTcaacctcttcctttttgttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29432660 361 + 173848474 ccctctcagctttaaaatcacccctatatactttgttttgtgacattggggct-gggtgcctgcaaatgatatttcccaaactcctttgcccattggcttcctcttgtgttctgtcaataagaggaaccagaaagagactagaaagcaagaggagagaagcaggggctgc-tttctaaattttgt--------tcttcctgtcagg---------tcactccaacaatg---------------------GCA-TTGAGTCCCATCTCTATTTGTTCTCTTCATGCATTCC-AGAATGTCTCACTGTCCATTACAT-AAGTA-AGTAGTAGTCCAGCTGCAGC--------------------GCGTCCTCTTTAGCACTCCGGGATGCCTTTCCTCAGTGGTCTcaacctcttcctttttgttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5233357 362 +   6154872 ccctctcagctttaaaatcacccttatatactttgttttgtgacattggggct-ggg-gcctgcaaatgatatttcccaaactcctttgcccattggcttcctcttgtgttctgtcaataagaggaaccagaaagatactagaaagcaagaggagagaagcaggggctgc-tttctaaattttgt--------tcttcctgtcagg---------tcactccaacaatg---------------------GCAGTTGAGTCCCATCTCTATTTGTTCTCTTCATGCATTCC-AGAATGTCTCACTGTCCCTTACATAAAGTA-AGTAGTAGTCCAGCTGCAGC--------------------GCGTCCTCTTTAGCACTCCAGGGTGCCTTTCCTCAGTGGTCTcaacctcttcctttttgttc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74236340 362 + 122973662 ccctctcagctttaaaatcacccttatatactttgttttgtgacattggggct-gggtgcctgcaaatgatgtttcccaaactcctttgcccgttggcttcctcttgtgttctgtcaataagaggaaccagaaagagactagaaaccaagaggagagaagcaggggctgc-tttctaaattttgt--------tcttcccgtcagg---------tcactccaacaatg---------------------GCAGTTGAGTCCCATCTCTATTTGTTCTCTTCATGCATTCC-AGAATGTCTCACTGTCCCTTACAT-AAATA-AGTAGTAGTCCAGCTGCAGC--------------------GCGTCCTCTTTAGCACTCCAGGGTGCCTTTCCTCAGTCGTCTcaacctcttcctttttgttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29412934 370 + 172585720 ccttctcagctttaaaatcaccctcatatactttgttttgtgacattggggct-gggcacctgcaaatgacatttcccaaactcctttgcccactggcttcctcttgtgttctgtcagtaagaggaaccagaaagagactagaaagcaagaggagagaagcaagggctac-tttctaaattttgt--------tcttcctgtcAGGAAAGGAAGTTGAGTCCAACAATG---------------------GCAGTCGAGTCCCATCTCTATTTGTTCTCTTCATGCATTCC--GAATGTCTCACTGCCCCTTACAT-AAATA-AGTACTAGTCCAGCTGCAGC--------------------GCATTCTCTTTAGCACTCCAGGGTGCCTTTCCTCAGTGGTCTcaacctcttccttttcgttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29073764 361 - 170955103 ccctctcagctttaaaattaccctcatatactttgttttgtgacattggggct-gggcacctgcaaatgacgtttcccaaactcctttgcccactggcttcctcttgtgttctgtcagtaagaggaaccagaaagagactagaaagcaagaggagagaagcaagggctac-tttctaaattttgt--------tcttcctgtcAGG---------TCACTCCAACAATG---------------------GCAGTTGAGTCCCATCTCTATTTGTTCTCTTCATGCATTCC--GAATGTCTCACTGCCCCTTACAT-AAATA-AGTACTAGTCCAGCTGCAGC--------------------GCGTCCTCTTTAGCACTCCAGGGTGCCTTTCCTCAGTGGTCTcaacctcttccttttcgttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2063628 361 -   2996164 ccctctcagctttaaaatcaccctcatatactttgttttgtgacattggggct-gggcacctgcaaatgacatttcccaaactcctttgcccactggcttcctcttgtgttctgtcagtaagaggaaccagaaagagactagaaagcaagaggagagaagcaagggctac-tttctaaattttgt--------tcttcctgtcagg---------tcactccaacaatg---------------------GCAGTTGAGTCCCATCTCTATTTGTTCTCTTCATGCATTCC--GAATGTCTCACTGCCCCTTACAT-AAATA-AGTACTAGTCCAGCTGCAGC--------------------GCGTCCTCTTTAGCACTCCAGGGTGCCTTTCCTCAGTGGTCTcaacctcttccttttcgttc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1926387 356 -   2157725 ccctctcagctttaaaatcaccctcatatac-----tttgtgacattggggct-gggtacctgcaaatgacatttcccaaactcctttgcccactggcttcttcttgtgttctgtcagtaagaggaaccagaaagagactagaaagcaagaggagagaagcaagggctac-tttctaaattttgt--------tcttcctgtcagg---------tcactccaacaatg---------------------GCAGTTGAGTCCCATCTCTATTTGTTCTCTTCATGCATTCC--GAATGTCTCACTGCCCCTTACAT-AAATA-AGTACCAGTCCAGCTGCAGC--------------------GCGTGCTCTTTAGCACTCCAGGGTGCCTTTCCTCAGTGGTCTcaacctcttccttttccttc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28370222 383 -  71996105 ccctctcagctttaaaatcaccctcatatactttgttttgtgacattggggct-gggcacctgcaaatgacatttcccaaactcctttgcccactggcttcctcttgtgttctgtcagtaagaggaaccagaaagagactagaaagcaagaggagagaagcaagggctac-tttctaaattttgt--------tcttcctgtcAGG---------TCACTCCAACAATGGCAGTTGAGTCCCATCTCTATGCAGTTGAGTCCCATCTCTATTTGTTCTCTTCATGCATTCC-AGAATGTCTCACTGTCCCTTACAT-AAATA-AGTACTAGTCCAGCTGCAGC--------------------ACGTCCTCTTTAGCACTCCAGGGTGCCTTTCCTCAGTGGTCTcaacctcttccttttcgttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2059955 361 +   2316924 ccctctcagctttaaaatcaccctcatatactttgttttgtgacattggggct-gggcacctgcaaatgatatttcccaaactcctttgcccactggcttcctcttgtgttctgttagtaagaggaaccagaaagagactagaaagcaagaggagagaagcaagggctac-tttctaagttttgt--------tcttcctgtcagg---------tcactccaacaatg---------------------GCAGTTGAGTCCCATCTCTATTTGTTCTCTTCATGCATTCC--GAATGTCTCACTGCCCCTTACAT-AAATA-AGTACTAGTccagctgcagc--------------------gcgtcctctttagcactccagggtgcctttcctcagtggtctcaacctcttccttttcgttc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1930361 362 -   3067355 ccctctcagctttaaaatcatcctcatatactttgttttgtgacattggggct-gggcacctgcaaatgacatttcccaaacacctttgcccactggcttcctcttgtgttctgtcaataagaggaaccagaaagagactagaaagcaagaggagagaagcaagggctac-tttctaaattttgt--------tcttcctatcagg---------tcactccaacaatg---------------------GCAGTTGAGTCCCATCTCTGTTTGTTCTCTTCATGCATTCC-AGAATGTCTCACTGTCCCTTACAT-AAATA-AGTACTAGCCCAGCTTCGGC--------------------GCGTCCTCTTTAGCACTCCAGGGTGCCTTTCCttagtggtctcaacctcttccttttcgttc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171456830 375 - 171630274 CCctctcagctttaaaatgaccctcatacactctgttttgtgatattggggct-gggcatctgcagatgacatttcccaaactcctttgcccactggctttctcttgtgttctgtcaataagaagaaac------agactagaaagcaggaggagagacacagggactgc-tttctaaatgtttttcttcctctcttcctgtcagg---------tcacaccaacaatg---------------------GCAGTGGAGTCCCATCTCAATTCGTTCTCTTCATGCATTCCCAGAATGCCTCACTGTCCCTTATAT-AAATA-ACTGCTAGTCCAGCTGCAGCA---------GCAGGACGGTGCTTCCTCCCTAACACTCCAGGG-GCCTTTCCTCAGTGGTCGcaatctctttcctttccttc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            282896 381 -    375362 CCctctcagcttgaaaatcaccctca-gcactgtgttctgtgatattggggctggggaatctgcagacgacttttcccaaactcctttgcccagtggctttctcttgtgttctgtcagtaagaggaaacagaaggagactagaaagcgagaggagagacgcagggattgc-tttctaaatgtttttcttcctttcttcctgtcagg---------tcacagcaacaatg---------------------GCAGTGGAGTCCCATCTCTATTTGTTTACTTCATGCATTCCCAGAATGTCTCACTGTCCCTTATAT-AAGTA-AGTGCTAGTCCAGCTGCAGCA---------GCAGGACGGTGCTTCCTCCCTAACACTCCAGGG-GTCTTTCCTCAGTGGTCAcaatctctttcctttccttc
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      213014 374 -    285216 ccctctcagctttaaaatcaccctcatacactctgttttgtgatattggggct-gggcatctgcagatgacatttcccaaactcctttgcccactggctttctcttgtgttctgtcagtaagaggaaacagaaagagactaggaagcaagcg--gagacacagggactGC-TTTCTGAATG---TTCTTCATTTCTTCCTGTCAGG---------TCGCACCA--GATG---------------------GCCATGGAGTCCCATCTCGATTCATTCTCTTCATGCATTCCCAGAATGTCTCACTGTCCCTTATAT-AAATA-AGTGCTAGTCCAGCTGCAGCA---------GCAGGACGGTGCTTCCTCCCTAACACTCCAGGG-GCCTTTCCTCGGCGGTCGcaatctctttcctttccttc
i aotNan1.NW_018494050v1   I 690 C 0
s otoGar3.GL873742           1576999 362 -   2232465 ctctgacagcttcaaatccaccctcatatattctgttccatgatgttgagtat-gggtgtctgagaattacattccccatactcctttgctcacc-attttctcttaggttctgtcaataagagaaaccagaaggagagtggaaggcaggaggagaaaagaagagcctgcttttctaagttgtgc--------tcttcctgtcAGG---------TCACT-CAACAATG---------------------GCAGCTGAGTCCAACCTCTGTGTGTTCT-TTCATGCATTCTCAGA-----------------ACAT-AAGTATAGCAGCAAT--AGCAGCAGCAGAGAGGATGGCGGGCCAGTTCTTCCTTTTTAGAGCCCCAGG-TGCCTTCTCTCATTGTTCCTAACCTCTTCCCTTGTATTC
i otoGar3.GL873742         C 0 I 10049
e dasNov3.JH561790             92833 3283 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I

a score=709658.000000
s hg38.chr6_GL000254v2_alt    211545 85 +   4827813 ttccagccctacaaggtggtagctacttcccagtagttatcacctctgagttaccatggtgtGCCCAGTTGAAATACCTAGTC-TT
s panTro5.chr6              29199007 85 + 175400573 ttccagccctacaaggtggtagctacttcccagtagttatcacctctgagttaccatggtgtGCCCAGTTGAAATACCTAGTC-TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29433021 85 + 173848474 ttccagccctacaaggtggtagctacttcccagtagttatcgcctctgagttaccatggtgtGCCCAGTTGAAATACCTAGTC-TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5233719 85 +   6154872 ttccagccctacaaggtggtagctacttcccagtagttatcacctctgagttaccatggtgtGCCCAGTTGAAATACCTAGTC-TT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74236702 85 + 122973662 ttccagcccgacaaggtggtagctacttcccagtagttattacctctgagttaccatggtgtGCCCAGttgaaatacctagtg-tt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29413304 85 + 172585720 ttccagccccacaaggtggtagctacttcccagtagttattacctctgagttacTATGTTGTGCCTAGTTGAAATACCTAGTC-TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29074125 85 - 170955103 ttccagccccacaaggtggtagctacttcccagtagttattacctctgagttacTATGTTGTGCCTAGTTGAAATACCTAGTC-TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2063989 85 -   2996164 ttccagccccacaaggtggtagctacttcccagtagttattacctctgagttacTATGTTGTGCCTAGTTGAAATACCTAGTC-TT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1926743 85 -   2157725 ttccagccccgcaaggtggtagctacttcccagtagttgttatctctgagttactgtgttGTGCCTAGTTGACATACCTAGTC-TT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28370605 85 -  71996105 ttccagccccacaaggtggtagctacttcccagtagttgttacctctgagttacTATGTTGTGCCTAGATGAAATACCTAGTC-TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2060316 83 +   2316924 ttccagccccgcaaggtggtagctacttcccagtagttgtta--tctGAGTTACTGTGTTGTGCCTAGTTGACATACCTAGTC-TT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1930723 85 -   3067355 ttccagccccacaaggtggtagctacttcccagtagttattctctctgagttacTATGTTGTGCCTAGTTGAAATACCTAGTC-TT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171457205 85 - 171630274 ttccagccccataaggtggcagttacttcctggtaattattacctcttggttaccataatgtgctctgttGAAATACCTAGTC-tt
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            283277 86 -    375362 ttccagccccataaggtggcagttacttcccagtagttattacctcttggttaccataatgtGCCCCATGGAAATACCTAATCttt
i saiBol1.JH378348         C 0 I 1
s aotNan1.NW_018494050v1      213388 85 -    285216 ttccagccccataaggtggcagttacttcccagtagttattacctcttggttaccataatgtGCCCCGTTGAAATACCTAGTC-tt
i aotNan1.NW_018494050v1   C 0 I 2
e dasNov3.JH561790             92833 3283 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I
e otoGar3.GL873742           1577361 10049 -   2232465 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I

a score=1336541.000000
s hg38.chr6_GL000254v2_alt    211630 202 +   4827813 A------------TTCC----------------------tttttttttgagacagagtcttgttctgtcacccag--------gctggagtgcagtggcacaatctcagctcgctgcaacctctgcctcccgggttcaagcgattctcctgcctcagcgtcccaggtagctggaattacaggcgcccgcc---acgacgtccagctaatttttgta-tttttaccagagacggggtttcaccatgttg
s panTro5.chr6              29199092 207 + 175400573 A------------TTCC-----------------ttttttttttttttgagacagagtcttgctctgtcacccag--------gctggagtgcagtggcacaatctcggctcgctgcaacctctgcctcccaggttcaagcgattctcctgcctcagcgtcccaggtagctggaattacaggcgcccgcc---acgacgtccagctaatttttgta-tttttaccagagacggggtttcaccatgttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29433106 202 + 173848474 A------------TTCC----------------------tttttttttgagacagagtcttgctctgtcacccag--------gctggagtgcagtggcacaatctcggctcgctgcaacctctgcctcccaggttcaagcgattctcctgcctcagcgtcccaggtagctggaattacaggcgcccgcc---acgacgtccagctaatttttgta-tttttaccagagacggggtttcaccatgttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5233804 224 +   6154872 A------------TTCCTCtttttttttttttttttttttttttttttgagacagagtcttgctctgtcacccag--------gctggagtgcagtggcacaatctcggctcgctgcaacctctgcctcccgggttcaagcgattctcctgcctcagcgtcccaggtagctggaattacaggcgcccgcc---acgacgtccagctaatttttgta-tttttaccagagacggggtttcaccatgttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74236787 231 + 122973662 a------------ttcc-cgttttttttttttgtttttttttttttttgagacagagtcttgctctgtcacccaggctggagtgctggagtgcagtggcacaatctcggctcactgcaacctctgcctctcgggttcaagcgattctcctgcctcagcgtcccaagtagctgaaattacaggcgcccgcc---acgatgtccagctaatttttgta-tttttaccagagatggggtttcaccatgttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29413389 212 + 172585720 A------------ttct---------------tttttcttttttttttgagacagagtcttgctcggttgcccag--------gctagagtgcagtggcatgagctcggctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcgtcccaaatagctggaattacaggcgcccgccgtgaccacgtccagctaatttttgta-tttttaccagagaagaggtttcaccatgttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29074210 212 - 170955103 A------------ttct---------------tttttcttttttttttgagacagagtcttgctccgttgcccag--------gctagagtgcagtggcatgagctcggctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcgtcccaaatagctggaattacaggcgcccgccgtgaccacgtccagctaatttttgta-tttttaccagagaagaggtttcaccatgttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2064074 212 -   2996164 A------------ttct---------------tttttcttttttttttgagacagagtcttgctccgttgcccag--------gctagagtgcagtggcatgagctccgctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcgtcccaaatagctggaattacaggcgcccgccgtgaccacgtccagctaatttttgta-tttttaccagagaagaggtttcaccatgttg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1926828 209 -   2157725 A------------ttct---------------ttt---ttttgtttttgagacagagtgttgctctgttgcccag--------gctggagtgcagtggcatgatctcagctcactgcaacctctgcctcccaggttgaagtgattctactgcctcagcgtcccaaatagctggaattacaggcgcccgccgtgaccacgtccagctaatttttgta-tttttaccagagaagaggtttcaccatgttg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28370690 180 -  71996105 A-----------------------------------------------------------Tgctccgttgcccag--------gctagagtgcagtggcatgatcttggctcactgcaacctctgcctcctgggttcaagcgattctcctgccttagcgtcccaaatagctggaattacaggcgcccaccgtgaccacgtccagctaatttttgta-tttttaccagaggcagggtttcaccttgttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2060399 216 +   2316924 A--------ttcttttt---------------ttttttttttttttttgagacagagtgttgctctgttgcccag--------gctggagtgcagtggcatgatctcggctcactgcaacctctgcctcccaggttgaagtgattctcctgcctcagcgtcccaaatagctggaattacaggcgcccaccgtgaccacgtccagctaatttttgta-tttttaccagagaagtggtttcaccatgttg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1930808 224 -   3067355 ATTCtttctttcttttt---------------ttttttttttttttttgagacagagtcttgctccgtctcccag--------gctggagtgcagtggcgtgatctcggctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcatcccaaatagctgaaattacagacacctgctgtgaccacgtccagctaatttttgta-tttttaccagagacggggtttcaccatgttg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171457291 191 - 171630274 ----------------------------------ctttttttttttttgacacagggtcttgctttgttgcccag--------ggtggagtacagtggcgcgatctcggctcactgcaacttccgcctcctgggt-----------tcctgcctcagactcctgagtagctgggattacaggtgcccacc---accatgtccagctaatttttgta-tttttatgagagacagggtttcaccttattg
i calJac3.chr4             I 1 C 0
s saiBol1.JH378348            283364 192 -    375362 ----------------------------------cttttttttaaattgagacagggtcttgctctgttgcccag--------ggtggagtacagtggcacgatctcggctcactgcaacttccgcctcctgggt-----------tcctgcctcagacccctgagtagctgggattaccggtgcccacc---accacgtccagctaatttgtgtattttttaccagagatgaggtttcaccttgttg
i saiBol1.JH378348         I 1 C 0
e dasNov3.JH561790             92833 3283 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I
e otoGar3.GL873742           1577361 10049 -   2232465 I
e aotNan1.NW_018494050v1      213473   2 -    285216 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I

a score=4090845.000000
s hg38.chr6_GL000254v2_alt    211832 709 +   4827813 gccaggctggtcttgaactcctgacctcaagtgatctgcccgcttcggcctcccaaagtgctgggattacagatgtgagccaccgtgcccagccTTATTTCTTAACTAGACCCTGAACCACACATAGGGggtgcagggatagcactccacacaacagaaaaagcttctgctctcatggagtttacattttagtggggaatgataaagaataaattcaaccagatatataaaatgtgaagtagtgatacatgccatgaaggaaaagagcaagagaatggagaacaaaggggaggggattgctttataataaagggtgaccaaggaggccttcctgataaggaggcatctgaacagagacttgaagga----agtgagtgagtgagctgtgaggctatcagggagaagagaatttcaggccaagggaacagtaattacaaaaggcttggcaggaatgccattggcatgttcaaggaacgaaggaggagactagtgcagctgtaggtcagtaaacaagggagaacttgataggagatgagggggttagatacacatagaccctacaggatgcacatagatcatgcagggtctcagaggtcaTGATCATGTTCAGAGAGGGAATTCGCTGCATAGGGGAGAGAAAAGACAACAGTGATTTAAGTTGTGGAGGTCAgccagaccttgagaatattctgattca-tgagt-----------ctgagataga
s panTro5.chr6              29199299 720 + 175400573 gccaggctggtcttgaactcctgacctcaagtgatctgcccccttcggcctcccaaagtgctgggattacagatgtgagccaccgtgcccagccTTATTTCTTAACTAGACCCTGAACCACACAtagggggtgcagggatagcactccacacaacagaaaaagcttctgctctcatggagtttacattttagtggggaatgataaagaataaattcaaccagatatataaaatgtgaggtagtgatacatgccatgaaggaaaagagcaagagaatggagaacaaaggggaggggattgctttataataaagggtgaccaaggaggcctttctgataaggaggcatctgaacagagacttgaagga----agtgagtgagtgagctgtgaggctatcagggagaagagaatttcaggccaagggaacagtaattacaaaaggcttggcaggaatgtcattggcatgttcaagaaacgaaggaggagactagtgcagctgtaggtcagtaaacaagggagaacttgataggagatgagggggttagatacacatagaccctacaggatgcacattgatcatgtagggtctcagaggtcaTGATCATGTTCAGAGAGGGAATTCGCTGCATAGGGGAGAGAAAAGACAACAGTGAGTTAAGTTGTGGAGGTCAGCCAGACCTTGAGAATATTCTGATTCA-TGAGTCTGAGATAGAACTGAGATAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29433308 720 + 173848474 gccaggctggtcttgaactcctgacctcaagtgatctgcccccttcggcctcccaaagtgctgggattacagatgtgagccaccgtgcccagccTTATTTCTTAACTAGACCCTGAACCACACATAGGGggtgcagggatagcactccacacaacagaaaaagcttctgctctcatggagtttacattttagtggggaatgataaagaataaattcaaccagatatataaaatgtgaggtagtgatacatgccatgaaggaaaagagcaagagaatggagaacaaaggggaggggattgctttataataaagggtgaccaaggaggcctttctgataaggaggcatctgaacagagacttgaagga----agtgagtgagtgagctgtgaggctatcagggagaagagaatttcaggccaagggaacagtaattacaaaaggcttggcaggaatgccattggcatgttcaagaaacgaaggaggagactagtgcagctgtaggtcagtaaacaagggagaacttgataggagatgagggggttagatacacatagaccctacaggatgcacattgatcatgtagggtctcagaggtcaTGATCATGTTCAGAGAGGGAATTCGCTGCATAGGGGAGAGAAAAGACAACAGTGAGTTAAGTTGTGGAGGTCAGCCAGACCTTGAGAATATTCTGATTCA-TGAGTCTGAGATAGAACTGAGATAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5234028 709 +   6154872 gccaggctggtcttgaactcctgacctcaagtgatctgcccgcttcagcctcccaaagtgctgggattacagatgtgagccaccgtgcccagccTTATTTCTTAACTAGACCCTGAACGACACATAGGGggtgcagggatagcactctacacaacagaaaaagcttctgctctcatggagtttacattttagtggggaatgataaagaataaattcaaccagatatataaaatgtgaggtagtgatacatgccatgaagaaaaagagcaagagaatggagaacaaaggggaggggattgctttataataaagggtgaccaaggaggccttcctgataaggaggcatctgaacagagacttgaagga----agtgagtgagtgagctgtgaggctatcagggagaagagaatttcaggccaagggaacagtaattacaaaaggcttggcaggaatgccattggcatgttcaaggaacgaaggaggagactagtgcagctgtaggtcagtaaacaagggagaacttgataggagatgagggggttagatacacatagaccctacaggatgcacatagattacgtagggtctcagaggtcaTGATCATGTTCAGAGAGGGAATTCGCTGCATAGGGGAGAGAAAAGACAACAGTGAGTTAAGTTGTGGAGGTCAGCCAGACCTTGAGAATATTCTGATTCA-TGAGT-----------CTGAGATAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74237018 709 + 122973662 gccaggctggtcttgaactcttgatctcaagtgatccgcccgcttcggcctcccaaagtgctgggattacagatgtgagccactgtgcccggccttatttcttaactagaccctgaatgacacaTAAGGggtgcagggatagcactccacacaacagaaaaagcttctgctctcatggagtttacattttagtggggaatgataaagaataaactcaaccagatatataaaatgtgaggtagtgatacatgccatgaagaaaaagagcaagagaatggagaacaaaagggaggggattgctttataataaagggtgaccaaggaggccttcctgataaggaggcatctgaacagagacttgaagga----agtgagtgagtgagctgtgaggctatcagggagaagagaatttcaggccaagggaacagtaattacaaaaggcttggcaagaatgccgttggcatgttcaaggaacgaaggaggagactagtgctgctgtaggtcagtaagcaagggagaacttgataagagatgagggggttagatacacatagaccccacatgatgcacatagatcatgtagggtctcagaggtcaTGATCATGTTCAGAGAGGGAATTCACTGCATAGGGGAGAGAAAAGACAACAGTGAGTTAAGTTGTGGAGGTCAGCCAGACCTTGAGAATATTCTGATTCA-TGAGT-----------CTGAGATAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29413601 713 + 172585720 gccaggctggtcttgaactcctgacctcgagtgatctgccctcttccgccttccaaagtgctgagattacagacgtgagccaccgcgccaggccTTATTTCTTAACTAGA-CCTGAACCATACATAGtgggtgcagggatagcactccacacaacggaaaaagcttctgctctcatggagtttacattttagtggggaatgataaagaataaactcaaccagatatataaaatgtgaggtagtgatacatgccatgaagaaaaagagcaagagaatggagaacaaaggggaggagactgctttataataaagggtgaccaaggaggccttcctgataaggaggcatctgaacagagacttgaaggaagtgagtgagtgagtgagctgtgaggctatcagggaaaagagaatttcaggccgagggaacagtaattacaaaaggcttggcgggaatgccattggcatgttcaaggaacgatggaggagaatagtgcagctgaagatcagtaaacaagggagaacttgataggagatgagggggttagatacacatagaccctacatgatgcacatagatcatgtagggtctaagaggtcacGATCATGTTCAGAGAGGGAATACACTGCATAGGGCAGAGAAAAGATAACAGTGAATTAAGTTGTGGAGGTCAgccagaccttgagaatattctgattcagtgagt-----------ctgagataga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29074422 713 - 170955103 gccaggctggtcttgaactcctgacctcgagtgatctgccctcttccgccttccaaagtgctgagattacagacgtgagccaccgcgccaggccTTATTTTTTAACTAGA-CCTGAACCATACATAGtgggtgcagggatagcactccacacaacggaaaaagcttctgctctcatggagtttacattttagtggggaatgataaagaataaactcaaccagatatataaaatgtgaggtagtgatacatgccatgaagaaaaagagcaagagaatggagaacaaaggggaggagactgctttataataaagggtgaccaaggaggccttcctgataaggaggcatctgaacagagacttgaaggaagtgagtgagtgagtgagctgtgaggctatcagggaaaagagaatttcaggccgagggaacagtaattacaaaaggcttggccggaatgccattggcatgttcaaggaacgatggaggagaatagtgcagctgaagatcagtaaacaagggagaacttgataggagatgagggggttagatacacatagaccctacatgatgcacatagatcatgtagggtctaagaggtcacGATCATGTTCAGAGAGGGAATACACTGCATAGGGCAGAGAAAAGATAACAGTGAATTAAGTTGTGGAGGTCAGCCAGACCTTGAGAATATTCTGATTCAGTGAGT-----------CTGAGATAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2064286 713 -   2996164 gccaggctggtcttgaactcctgacctcgagtgatctgccctcttccgccttccaaagtgctgagattacagacttgagccaccgcgccaggccTTATTTCTTAACTAGA-CCTGAACCATACATAGtgggtgcagggatagcactccacacaacggaaaaagcttctgctctcatggagtttacattttagtggggaatgataaagaataaactcaaccagatatataaaatgtgaggtagtgatacatgccatgaagaaaaagagcaagagaatggagaacaaaggggaggagactgctttataataaagggtgaccaaggaggccttcctgataaggaggcatctgaacagagacttgaaggaagtgagtgagtgagtgagctgtgaggctatcagggaaaagagaatttcaggccgagggaacagtaattacaaaaggcttggccggaatgccattggcatgttcaaggaacgatggaggagaatagtgcagctgaagatcagtaaacaagggagaacttgataggagatgagggggttagatacacatagaccctacatgatgcacatagatcatgtagggtctaagaggtcacggtCATGTTCAGAGAGGGAATACACTGCATAGGGCAGAGAAAAGATAACAGTGAATTAAGTTGTGGAGGTCAGCCAGACCTTGAGAATATTCTGATTCAGTGAGT-----------CTGAGATAGA
i macNem1.NW_012011356v1   C 0 M 380
s cerAty1.NW_012001495v1     1927037 713 -   2157725 gccaggctggtcttgaactcctgacctcgagtgatccgccctcttccgccttccaaagtgcggagattacagacgtgagccaccgcgccaggccTTATTTCTTAACTAGA-CCTGAACCATGCATAGtgggtgcagggatagcactccacacaacggaaaaagcttctgctctcatggagtttacattttagtggggaatgataaagaataaactcaaccagatatataaaatgtgaggtagtgatacatgccatgaagaaaaagagcaagagaatggagaacaaaggggaggagattgctttataataaagggtgaccaaggaggccttcctgataaggaggcatctgaacagagacttgaaggaagtgagtgagtgagtgagctgtgaggctatcagggaaaagagaatttcaggccgagggaacagtaattacaaaaggcttggccggaatgccattggcacgttcaaggaacgatggaggagaatagtgcagctgaagatcagtaaacaagggagaacttgataggagatgagggggttagatacacgtagaccctacatgatgcacatagatcatgtagggtctcagaggtcacGATCATGTTCAGAGAGGGAATTCACTGCATAGGGCAGAGAAAAGATAACAGTGAATTAAGTTGTGGAGGTCAgccagaccttgagaatattctgattcagtgagt-----------ctaagataga
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28370870 709 -  71996105 gtcaggctggtcttgaactcctgacctcgaatgatccgccctcttccgccttccaaagtgctgggattacagacgtgagccaccgagccaggccTTATTTCTTAACTAGA-CCTGAACAATACATAGtgggtgcagggatagcactccatacaacggaaaaagcttctgctctcatggagtttacattttagtggggaatgataaagaataaactcaaccagatatataaaatgtgaggtagtgatacatgccatgaagaaaaagagcaagagaatggagaacaaaggggacgagactgctttataataaagggtgaccaaggaggccttcctgataaggaggcatctgaacagagacttgaagga----agtgagtgaatgagctgtgaggctatcagggaaaagagaatttcaggccgagggaacagtaattacaaaaggcttggccggaatgccattggcatgttcaaggaatgagggaggagaatagtgcggctgaagatcagtaaacaagggagaacttgatgggagatgagggggttagatacgcatagaccctacatgatgcacatagatcatgaagggtctcagaggtcacGATCATGTTCAGAGAGGGAATTCACTGCATAGGGCAGAGAAAAGATAACAGTGAACTAAGTTGTGGAGGTCAGCCAGACCTTGAGAATATTCTGATTCAGTGAGT-----------CTGAGATAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2060615 713 +   2316924 gccaggctggtcttgaactcctgacctcgagtgatccgccctcttccgccttccaaagtgctgagattacagatgtgagccaccgcgccaggccTTATTTCTTAACTAGA-CCTGAACCATACATAGtgggtgcagggatagcactccacacaacggaaaaagcttctgctctcatggagtttacattttagtggggaatgataaagaataaactcaaccagatatataaaatgtgaggtagtgatacatgccatgaagaaaaagagcaagagaatggagaacaaaggggaggagattgctttataataaagggtgaccaaggaggccttcctgataaggaggcatctgaacagagacttgaaggaagtgagtgagtgagtgagctgtgaggctatcagggaaaagagaatttcaggctgagggaacagtaattacaaaaggcttggccggaatgccattggcatgttcaaggaacgatggaggagaatagtgcagctgaagatcagtaaacaagggagaacttgataggagatgagggggttagatacacgtagaccctacatgatgcacatagatcatgtagggtctcagaggtcacGATCATGTTCAGAGAGGGAATTCACTGCATAGGGCAGAGAAAAGATAACAGTGAATTAAGTTGTGGAGGTCAgccagaccttgagaatattctgattcagtgagt-----------ctgagataga
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1931032 694 -   3067355 gccaggctggtcttgaactcctgacctcgagtgattcgccctcttcggccttccaaagtgctgggattacagacatcagccaccgtgccaggccTTATTTCTTAACTAGA-CCTGAACGATACATAGtgggtgcagggatagcactccacacaacagaaaaagcttctgctctcatggagtttacattttagtggggaatgataaagaataaactcaaccagatatataaaatgtgaggtggtgatacatgccatgaagaaaaagagcaagagaatggagaacagaggggaggagattgctttataataaagggtgaccaaggaggccttcctgatgaggaggcatctgaacagagacttgaaggaa-------------------gtgaggctatcagggaaaagagaatttcaggccgagggaacagtaattacaaaaggcttggcctgaatgccgttggcatgttcaaggaacgacggaggagaatagtgcggctgaagatcagtaaacaagggagaacttgataggagatgagggggttcgatacacgtagaccctacatgatgcacatagatcatgtagggtctcagaggtcacGATCATGTTCAGAGAGGGAATTCACTGCATAGGGCAGAGAAAAGATAACAGTGAGTTAAGTTGCGGAGGTCAgccagaccttgagaatattctgattcagtgagt-----------ctgagataga
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             92833 3283 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I
e saiBol1.JH378348            283556   0 -    375362 C
e otoGar3.GL873742           1577361 10049 -   2232465 I
e aotNan1.NW_018494050v1      213473   2 -    285216 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I
e calJac3.chr4             171457482   0 - 171630274 C

a score=1390060.000000
s hg38.chr6_GL000254v2_alt    212541 313 +   4827813 atctgtgaatc-----------t-------ttttttttttt----tttg-agatggagtttcactcttgtt------------gcccaggctagagtgcaatggcacgatctcggctcacggcaacctctacctcctggttcaagcgattctcctgcctcagcctctggagtagctgggattacaggcatgcgccaccacgcccggctaattttgtgtttttagtagagatgtggtttctccatgttggtcaggctggtctcgatctcctggcctcagatgatccatgcacctgggcctcccaaagtgctgggattacaggtgtgagccactgcaactggcct---gaatc
s panTro5.chr6              29200019 315 + 175400573 ATCTGTGAATC---------ttt-------ttttttttttt----tttg-agatggagtttcactcttgtt------------gcccaggctagagtgcaatggcacgatctcggctcactgcaacctctacctcctggttcaagcgattctcctgcctcagcctctggagtagctgggattacaggcatgcgccaccacgcccggctaattttgtgtttttagtagagatggggtttctccatgttggtcaggctggtctcgatctcctggcctcagatgatccatgcacctgggtctcccaaagtgctgggattacaggtgtgagccaccgcaactggccT---GAATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29434028 314 + 173848474 ATCTGTGAATC-----------t-------ttttttttttt----tttgtagatggagtttcactcttgtt------------gcccaggctagagtgcaatggcacgatctcggctcactgcaacctctacctcctggttcaagcgattctcctgcctcagcctctggagtagctgggattacaggcatgcgccaccacgcccggctaattttgtgtttttagtagagatggggtttctccatgttggtcaggctggtctcgatctcctggcctcagatgatccatgcacctgggtctcccaaagtgctgggattacaggtgtgagccaccgcaactggccT---GAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5234737 324 +   6154872 ATCTGTCAATCtttttttttttt-------ttttttttttt----tttg-agatggagtttcactcttgtt------------gcccaggctagagtgcaatggcacgatctcggctcactgcaacctctacctcctggttcaagcgattctcctgcttcagcctctggagtagctgggattacaggcatgtgccacgacgcccagctaattttgtgtttttggtagagatggggtttctccatgttggtcaggctggtgttgatctcctgacctcagatgatccatgcacctgggcctcccgaagtgctgggattacaggtgtgagccactgcaactggccT---GAATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74237727 315 + 122973662 ATCTGTGAATC---------TGt-------ttttttttttt----tttg-agatggagttttgctcttgtt------------gcccaggctagagtgcaatggcacgatctcagcttactgcaacctctacctcctggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcatgtgccaccacgcccggctaatttcgtatttttagtagagatggggtttctccatgttggtcaggctggtctcgatctcccaacctcagatgatccgtgcacctgggcctcccaaagtgctgggattacaggtgtgagccaccgcaactggccT---GAATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29414314 325 + 172585720 atctgtgaaac---------tcctttttttttttttttttttttttttc-agatggag-ttcgctcttgtt------------gcccaggctggagtgcaatggcaccatcttggctcactgcaacctccacctcgtggttcaagtgattttcctgcctcagcctcccgagtagctgggattacaggcatgcgccaccaagcccagctaattttgtatttttagtagagatggggtttctccatgttggtcaagctggtctcgatctccagacctcagatgatccgcgcacctgggcctctcaaagtgctgggattacaggtgtgagccaccgcaaccggcct---gaatc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29075135 326 - 170955103 ATCTGTGAAAC---------TCttttttttttttttttttttttttttc-agatggag-ttcgctcttgtt------------gcccaggctggagtgcaatggcaccatcttggctcactgcaacctccacctcgtggttcaagtgattttcctgcctcagcctcccgagtagctgggattacaggcatgcgccaccaagcccagctaattttgtatttttaatagagatggggtttctccatgttggtcaggctggtctcaaactcccaacctcaggtgatctgcctgccttggcctcccaaagtgctgggattacaggcgtgagccaccatgcccggccTCacgaa--
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1927750 319 -   2157725 atctgtgaaac---------tcc-------ttttttttttttttttttc-agatggagtttcgctcttgtt------------gcccaggctggagtgcaatggcaccatcttggctcactgcaaccttcacctcgtggttcaagtgattctcctgcctcagcctcccgagtagctgggattacagtcatgcgccaccaagcccagctaattttgtatttttagtagagatggggtttctccatgttggtcaagctggtctcgatccccggacctcagatgatccgcgcacctgggcctcccaaagtgctgggattacaggtgtgagccaccgcaaccggcct---gaatc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28371579 319 -  71996105 ATCTGTGAAAC---------TCt-------ttttttttttttctctctc-agatggagtttcgctcttgtt------------gcccaggctggagtgcaatggcacgatcttggctcactgcaacctccacctcgtggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcatgcgccaccaagtccagctaattttgtatttttagtagagttggggtttctccatgttggtcaagctggtctcgatctccggacctcagatgatccgcacacctgggcctcccaaagtgctgggattacaggtgtgagccactgcaaccggccT---GAATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2061328 315 +   2316924 atctgtgaaac---------tcc-------ttttttttttt----tttc-agatggagtttcgctcttgtt------------gcccaggttggagtgcaatggcaccatcttggctcactgcaacctccacctcgtggttcaagtgattctcctgcctcagcctcccgagtagctgggattacagtcatgcgccaccaagcccagctaattttgtatttttagtagagatggggtttctccgtgttggtcaagctggtctcgatccctggacctcagatgatccgcgcacctgggcctcccaaagtgctgggattacaggtgtgagccaccgcaaccggcct---gaatc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1931726 323 -   3067355 aactgtgaaac---------tgt-------ttttttt--------tttc-agatggagtttcgctctcgttgcccaggctagagcccaggctggagtgcaatggcatgatcttggctcactgcaacctccacctcgtggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcatgcgccaccacacccagctaattttgtatttttagtagagatggggtttctccatgttggtcaagctggtctcgatctccggacctcagatggtccgcgcacctgggcctcccaaagtgctgggattataggtgtgagccactgcaaccagcct---gaatc
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             92833 3283 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I
e saiBol1.JH378348            283556   0 -    375362 C
e otoGar3.GL873742           1577361 10049 -   2232465 I
e aotNan1.NW_018494050v1      213473   2 -    285216 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I
e calJac3.chr4             171457482   0 - 171630274 C
e macNem1.NW_012011356v1     2064999 380 -   2996164 M

a score=46101.000000
s hg38.chr6_GL000254v2_alt    212854 9 +   4827813 tgagttttt
s panTro5.chr6              29200334 9 + 175400573 TGAGTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29434342 9 + 173848474 TGAGTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235061 9 +   6154872 TGAGTTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74238042 9 + 122973662 TGGGTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29414639 9 + 172585720 tgggttttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29075461 9 - 170955103 tgaattctt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1928069 9 -   2157725 tgggttctt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28371898 9 -  71996105 TGGGTTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2061643 9 +   2316924 tgggttttt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1932049 9 -   3067355 tgggttttt
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH561790             96116 9 -    302817 tggATTTTT
i dasNov3.JH561790         I 3283 C 0
e canFam3.chr35             25945274 2790 +  26524999 I
e saiBol1.JH378348            283556 0 -    375362 C
e otoGar3.GL873742           1577361 10049 -   2232465 I
e aotNan1.NW_018494050v1      213473 2 -    285216 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I
e calJac3.chr4             171457482 0 - 171630274 C
e macNem1.NW_012011356v1     2064999 380 -   2996164 M

a score=32730.000000
s hg38.chr6_GL000254v2_alt    212863 5 +   4827813 aacag
s panTro5.chr6              29200343 5 + 175400573 AACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29434351 5 + 173848474 AACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235070 5 +   6154872 AACAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74238051 5 + 122973662 AACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29414648 5 + 172585720 aacag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29075470 5 - 170955103 aacag
i macFas5.chr4             C 0 I 1318
s macNem1.NW_012011356v1     2065379 5 -   2996164 AACAG
i macNem1.NW_012011356v1   M 380 C 0
s cerAty1.NW_012001495v1     1928078 5 -   2157725 aacag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28371907 5 -  71996105 AACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2061652 5 +   2316924 aacag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1932058 5 -   3067355 aacag
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH561790             96125 5 -    302817 AGGAG
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25945274 2790 +  26524999 I
e saiBol1.JH378348            283556 0 -    375362 C
e otoGar3.GL873742           1577361 10049 -   2232465 I
e aotNan1.NW_018494050v1      213473 2 -    285216 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I
e calJac3.chr4             171457482 0 - 171630274 C

a score=700708.000000
s hg38.chr6_GL000254v2_alt    212868 133 +   4827813 tgactccaggagatttgaatgccatcagtgtggcaacattttggaagccCCAGTCAAGGACTTACTCGGCCTATATTCATTTATCCTATGTTGACCGTCTCTGGAGAGATCATTTCCTCCCAAAATTCTCCTC
s panTro5.chr6              29200348 133 + 175400573 TGACTCCAGGAGATTTGAATGCCATCAGTGTGGCAACATTTTGGAAGCCCCAGTCAAGGACTTACTCGGCTTCTATTCATTTATCCCATGTTGACCGTCTCTGGAGAGATcacttcctcccaaaattctcctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29434356 133 + 173848474 TGACTCCAGGAGATTTGAATGCCATCAGTGTGGCAACATTTTGGAAGCCCCAGTCAAGGACTTACTCGGCCTCTATTCATTTATCCCATGTTGACCGTCTCTGGAGAGATcacttcctcccaaaattctcctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235075 133 +   6154872 TGACTCCAGGAGATTTGAACGCCATCAGTGTGGCAACATTTTGGAAGCCCCAGTCAAGTACTTACTCGGCCTATATTCATTTATCCCATGTTGACCGTCTCTGGAGAGATcacttcctcccaaaattctcctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74238056 133 + 122973662 TGACTCCAGGAGATTTGAATGCCATCAGTGTGGCAACATTTTGGAAGCCCCAGTCAAGGACTTACTCGGCCTATATTCATTTATCCCATGTTGACCGTCTCTGGAGAGATCACTTCCTCCCAAAATTCTCCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29414653 133 + 172585720 tgactccaggagatttgaatgccatcagtgtggcaacattttggaagccCCCGTCAAGGACTTACTCAGCCTGTATTCATTTATCCCATGTTGACTGTCTCTGGAGAGATCACTTCCTCCCAAAATTCTCCTC
i rheMac8.chr4             C 0 I 83
s macNem1.NW_012011356v1     2065384 133 -   2996164 TGACTCCAGGAGATTTGAATGCCATCAGTGTGGCAACATTTTGGAAGCCCCCGTCAAGGACTTACTCAGCCTGTATTCATTTATCCCATGTTGACTGTCTCTGGAGAGATCACTTCCTCCCAAAATTCTCCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1928083 133 -   2157725 tgactccaggagatttgaatgccatcagtgtggcaacattttggaagccCCCGTCAAGGACTTACTCAGCCTGTATTCATTTATCCCATGTTGACTGTCTCTGGAGAGATCACTTCCTCCCAAAATTCTCCTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28371912 133 -  71996105 TGACTTCAGGAGATTTGAATGCCATCAGTGTGGCAACATTTTGGAAGCCCCCGTCAAGGACTTACTCAGCCTGTATTCATTTATCCCATGTTGACTGTCTCTGGAGAGATTACTTCCTCCCAAAATTCTCCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2061657 133 +   2316924 tgactccaggagatttgaatgccatcagtgtggcaacattttggaagccCTCGTCAAGGACTTACTCAGCCTGTATTCATTTATCCCATGTTGACTGTCTCTGGAGAGATCACTTCCTCCCAAAATTCTCCTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1932063 133 -   3067355 tgactccaggaaatttgaatgccgtcggtgtggcaacattttggaagccCCCATCAAGGACTTACTCAGCCTGTGTTCATTTATCCCATGTTGACTCTCTCTGGAGAGATCACTTCCTCCCAAAATTCTCCTC
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH561790             96130 129 -    302817 TGACG-CGGAAGACCTGGATCCCCCCAGT-CGACAGCAGTGTGGAAG-CCGGGCCTGGGACATTCTCTGCCTGCGTCCAGTTATCCCTCCTTGGCTGTCTCCGCGGAGGCCAC-TCCCCCCACGAGTCTCCTC
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25945274 2790 +  26524999 I
e saiBol1.JH378348            283556   0 -    375362 C
e otoGar3.GL873742           1577361 10049 -   2232465 I
e aotNan1.NW_018494050v1      213473   2 -    285216 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I
e calJac3.chr4             171457482   0 - 171630274 C
e macFas5.chr4              29075475 1318 - 170955103 I

a score=200712.000000
s hg38.chr6_GL000254v2_alt    213001 55 +   4827813 ATTTTTGTTTAGTCATCCAGGGCTTGCTTACTGGTTAAAACTAGGAGCACTTGC-----------------C
s panTro5.chr6              29200481 55 + 175400573 atttttgtttagtcatccagggcttgcttactggttaaaactaggAGCACTTGC-----------------C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29434489 55 + 173848474 atttttgtttagtcatccagggcttgcttactggttaaaactaggAGCACTTGC-----------------C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235208 55 +   6154872 atttttgtttagtcatccagggcttgcttactggttaaaactaggAGCACTTGC-----------------C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74238189 72 + 122973662 GTTTTTGTTTGGTCATCCAGGGCTTGCTTACTGGTTAAAAGTAGCAGCACTTGCCTCAGGCTTTCACAAGGC
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012011356v1     2065517 55 -   2996164 GTTATTATTTGGTCATCCAGGCCTTGCTTACTGGTTAAAACTAGCAGCAGTTGC-----------------C
i macNem1.NW_012011356v1   C 0 I 17
s cerAty1.NW_012001495v1     1928216 55 -   2157725 GTTATTATTTGGTCATCCAGGCCTTGCTTACTGGTTAAAACTAGCAGCAGTTGC-----------------C
i cerAty1.NW_012001495v1   C 0 I 17
s chlSab2.chr17             28372045 55 -  71996105 GTTATTATTTGGTCATCCGGGTCTTGCTTACTGGTTAAAACTAGCAGCAGTTGC-----------------C
i chlSab2.chr17            C 0 I 17
s manLeu1.NW_012104165v1     2061790 55 +   2316924 GTTATTATTTGGTCATCCAGGCCTTGCTTACTGGTTAAAACTAGCAGCAGTTGC-----------------C
i manLeu1.NW_012104165v1   C 0 I 17
s colAng1.NW_012115566v1     1932196 55 -   3067355 ATTATTATTTGGTCATCCAGGCCTTGCTTACTGGTTTAAATTAGCAGCAGTTGC-----------------C
i colAng1.NW_012115566v1   C 0 I 17
s dasNov3.JH561790             96259 46 -    302817 GTTTTTACGTGATCACTCAGGGCTTGCTCACTGCTGAGAACCAGCA--------------------------
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25945274 2790 +  26524999 I
e saiBol1.JH378348            283556  0 -    375362 C
e otoGar3.GL873742           1577361 10049 -   2232465 I
e aotNan1.NW_018494050v1      213473  2 -    285216 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I
e calJac3.chr4             171457482  0 - 171630274 C
e macFas5.chr4              29075475 1318 - 170955103 I
e rheMac8.chr4              29414786 83 + 172585720 I

a score=334214.000000
s hg38.chr6_GL000254v2_alt    213056 69 +   4827813 TCATCAAGAGCAGAATAAATGCTCTATGCTTCCCAGAGAACTCTCAAAAGCTACAAGGTGCCATTTCCT
s panTro5.chr6              29200536 69 + 175400573 TCATCAAGAGCAGAATAAATGCTCTACGCTTCCCAGAGAACTCTCAAAAGCTACAAGGTGCCATTTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29434544 68 + 173848474 TCATCAAGAGCAGAATAAATGCTCTACGCTTCCCAGAGAACTCTCAAAAGCTACAAGGTGCCA-TTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235263 69 +   6154872 TCATCAAGAGCAGAATAAATGCTCTATGCTTCCCAGAGAACTCTCAAAAGCTACAAGGTGCCATTTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74238261 69 + 122973662 TCATCAAAAGCAGAATAAATGCTCTATGCTTCCCAGAGAACTCTCAAAATCTACAAGGTGCCGTTTCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29414869 68 + 172585720 TCATCAAGAGCAGAATAAATG-TCTATGCTTGCCAGAGAACTCTCAAAAGCTACAAGGTGCCGTTTCCT
i rheMac8.chr4             I 83 C 0
s macNem1.NW_012011356v1     2065589 69 -   2996164 TCATCAAGAGCAGAATAAATGCTCTATGCTTCCCAGAGAACTCTCAAAAGCTACAAGGTGCCGTTTCCT
i macNem1.NW_012011356v1   I 17 C 0
s cerAty1.NW_012001495v1     1928288 69 -   2157725 TCATCAAGAGCAGAATAAATGCTCTATGCTTCCCAGAGAACTCTCAAAAGCTACAAGGTGCCGTTTCCT
i cerAty1.NW_012001495v1   I 17 C 0
s chlSab2.chr17             28372117 68 -  71996105 TTATC-AGAGCAGAATAAATGCTCTGTGCTTCCCAGGGAACTCTCAAAAGCTACAAGGTGCCGTTTCCT
i chlSab2.chr17            I 17 C 0
s manLeu1.NW_012104165v1     2061862 69 +   2316924 TCATCAAGAGCAGAATAAATGCTCTATGCTTCCCAGAGAACTCTCAAAAGCTACAAGGTGCCGTTTCCT
i manLeu1.NW_012104165v1   I 17 C 0
s colAng1.NW_012115566v1     1932268 68 -   3067355 TCATCAAAAGCAGAATAAATGCTCTATGC-TCCCAGAGAACTCTCAAAAGCTACAAGGTGCCGTTTCCT
i colAng1.NW_012115566v1   I 17 C 0
s dasNov3.JH561790             96305 48 -    302817 --------------------GCTCTGTGCTCCCGAGA-CACTCTACAAAGAGCCAAAGTGCCCTTGCCT
i dasNov3.JH561790         C 0 I 6
e canFam3.chr35             25945274 2790 +  26524999 I
e saiBol1.JH378348            283556  0 -    375362 C
e otoGar3.GL873742           1577361 10049 -   2232465 I
e aotNan1.NW_018494050v1      213473  2 -    285216 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I
e calJac3.chr4             171457482  0 - 171630274 C
e macFas5.chr4              29075475 1318 - 170955103 I

a score=19295.000000
s hg38.chr6_GL000254v2_alt    213125 4 +   4827813 ATTC
s panTro5.chr6              29200605 4 + 175400573 ATTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29434612 4 + 173848474 ATTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235332 4 +   6154872 ACTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74238330 4 + 122973662 ATTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29414937 4 + 172585720 ATTC
i rheMac8.chr4             C 0 I 646
s macNem1.NW_012011356v1     2065658 4 -   2996164 ATTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1928357 4 -   2157725 ATTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28372185 4 -  71996105 ATTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2061931 4 +   2316924 ATTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1932336 4 -   3067355 ATTC
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             96353 6 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I
e saiBol1.JH378348            283556 0 -    375362 C
e otoGar3.GL873742           1577361 10049 -   2232465 I
e aotNan1.NW_018494050v1      213473 2 -    285216 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I
e calJac3.chr4             171457482 0 - 171630274 C
e macFas5.chr4              29075475 1318 - 170955103 I

a score=43112.000000
s hg38.chr6_GL000254v2_alt    213129 14 +   4827813 TGCTTTATTTC-TAA
s panTro5.chr6              29200609 14 + 175400573 TGCTTTATTTC-TAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29434616 15 + 173848474 TGCTTTATTTCTTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235336 14 +   6154872 TGCTTTATTTC-TGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74238334 14 + 122973662 TGCTTTATTTC-TAA
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012011356v1     2065662 14 -   2996164 CGGTTTATTTC-TAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1928361 14 -   2157725 CAGTTTATTTC-TAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28372189 14 -  71996105 CGGTTTATTTC-TAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2061935 14 +   2316924 CAGTTTATTTC-TAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1932340 14 -   3067355 CGCTTTATTTC-TAA
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             96353  6 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I
e saiBol1.JH378348            283556  0 -    375362 C
e otoGar3.GL873742           1577361 10049 -   2232465 I
e aotNan1.NW_018494050v1      213473  2 -    285216 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I
e calJac3.chr4             171457482  0 - 171630274 C
e macFas5.chr4              29075475 1318 - 170955103 I
e rheMac8.chr4              29414941 646 + 172585720 I

a score=47565.000000
s hg38.chr6_GL000254v2_alt    213143 12 +   4827813 tttttctttttt
s panTro5.chr6              29200623 12 + 175400573 TTTTTCTTtttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29434631 12 + 173848474 TTTTTCTCtttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235350 12 +   6154872 TTTTTCTTTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74238348 12 + 122973662 Tttttctttttt
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29076793 12 - 170955103 TCTCTCTCtttt
i macFas5.chr4             I 1318 C 0
s macNem1.NW_012011356v1     2065676 12 -   2996164 TTTTTCTTTTTT
i macNem1.NW_012011356v1   C 0 I 663
s cerAty1.NW_012001495v1     1928375 12 -   2157725 TTTTTCTTTTTT
i cerAty1.NW_012001495v1   C 0 I 361
s chlSab2.chr17             28372203 10 -  71996105 tttttctttt--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2061949 12 +   2316924 TTTTTCTTTTTT
i manLeu1.NW_012104165v1   C 0 I 324
s colAng1.NW_012115566v1     1932354 12 -   3067355 tttttctttttt
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             96353  6 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I
e saiBol1.JH378348            283556  0 -    375362 C
e otoGar3.GL873742           1577361 10049 -   2232465 I
e aotNan1.NW_018494050v1      213473  2 -    285216 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I
e calJac3.chr4             171457482  0 - 171630274 C
e rheMac8.chr4              29414941 646 + 172585720 I

a score=1883.000000
s hg38.chr6_GL000254v2_alt    213155 1 +   4827813 c
s panTro5.chr6              29200635 1 + 175400573 c
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29434643 1 + 173848474 c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235362 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74238360 1 + 122973662 c
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29076805 1 - 170955103 t
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28372213 1 -  71996105 c
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1932366 1 -   3067355 c
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             96353 6 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I
e saiBol1.JH378348            283556 0 -    375362 C
e otoGar3.GL873742           1577361 10049 -   2232465 I
e aotNan1.NW_018494050v1      213473 2 -    285216 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I
e calJac3.chr4             171457482 0 - 171630274 C
e manLeu1.NW_012104165v1     2061961 324 +   2316924 I
e cerAty1.NW_012001495v1     1928387 361 -   2157725 I
e macNem1.NW_012011356v1     2065688 663 -   2996164 I
e rheMac8.chr4              29414941 646 + 172585720 I

a score=5096.000000
s hg38.chr6_GL000254v2_alt    213156 2 +   4827813 tt
s panTro5.chr6              29200636 2 + 175400573 tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29434644 2 + 173848474 tt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235363 2 +   6154872 tt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74238361 2 + 122973662 tt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29415587 2 + 172585720 tt
i rheMac8.chr4             I 646 C 0
s macFas5.chr4              29076806 2 - 170955103 tt
i macFas5.chr4             C 0 C 0
s chlSab2.chr17             28372214 2 -  71996105 tt
i chlSab2.chr17            C 0 C 0
e dasNov3.JH561790             96353 6 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I
e saiBol1.JH378348            283556 0 -    375362 C
e otoGar3.GL873742           1577361 10049 -   2232465 I
e aotNan1.NW_018494050v1      213473 2 -    285216 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I
e calJac3.chr4             171457482 0 - 171630274 C
e colAng1.NW_012115566v1     1932367 0 -   3067355 C
e manLeu1.NW_012104165v1     2061961 324 +   2316924 I
e cerAty1.NW_012001495v1     1928387 361 -   2157725 I
e macNem1.NW_012011356v1     2065688 663 -   2996164 I

a score=2461.000000
s hg38.chr6_GL000254v2_alt    213158 6 +   4827813 tctttc
s panTro5.chr6              29200638 6 + 175400573 tctttc
i panTro5.chr6             C 0 I 1
s panPan2.chr6              29434646 5 + 173848474 ttctt-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235365 6 +   6154872 tctttc
i gorGor5.CYUI01015250v1   C 0 I 6
s rheMac8.chr4              29415589 6 + 172585720 tttttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29076808 6 - 170955103 tttttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2066351 6 -   2996164 TCtttt
i macNem1.NW_012011356v1   I 663 C 0
s chlSab2.chr17             28372216 2 -  71996105 tc----
i chlSab2.chr17            C 0 C 0
e dasNov3.JH561790             96353 6 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I
e saiBol1.JH378348            283556 0 -    375362 C
e otoGar3.GL873742           1577361 10049 -   2232465 I
e aotNan1.NW_018494050v1      213473 2 -    285216 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I
e calJac3.chr4             171457482 0 - 171630274 C
e colAng1.NW_012115566v1     1932367 0 -   3067355 C
e manLeu1.NW_012104165v1     2061961 324 +   2316924 I
e cerAty1.NW_012001495v1     1928387 361 -   2157725 I
e nomLeu3.chr1a             74238363 0 + 122973662 C

a score=5576.000000
s hg38.chr6_GL000254v2_alt    213164 2 +   4827813 tt
s panTro5.chr6              29200645 2 + 175400573 tt
i panTro5.chr6             I 1 C 0
s panPan2.chr6              29434651 2 + 173848474 tc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235377 2 +   6154872 tt
i gorGor5.CYUI01015250v1   I 6 C 0
s nomLeu3.chr1a             74238363 2 + 122973662 tt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29415595 2 + 172585720 tt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29076814 2 - 170955103 tt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2066357 2 -   2996164 tt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1928748 2 -   2157725 tt
i cerAty1.NW_012001495v1   I 361 C 0
e dasNov3.JH561790             96353 6 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I
e saiBol1.JH378348            283556 0 -    375362 C
e otoGar3.GL873742           1577361 10049 -   2232465 I
e aotNan1.NW_018494050v1      213473 2 -    285216 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I
e calJac3.chr4             171457482 0 - 171630274 C
e colAng1.NW_012115566v1     1932367 0 -   3067355 C
e manLeu1.NW_012104165v1     2061961 324 +   2316924 I
e chlSab2.chr17             28372218 0 -  71996105 C

a score=4095.000000
s hg38.chr6_GL000254v2_alt    213166 1 +   4827813 t
s panTro5.chr6              29200647 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29434653 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235379 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74238365 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29415597 1 + 172585720 t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29076816 1 - 170955103 t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2066359 1 -   2996164 t
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1928750 1 -   2157725 t
i cerAty1.NW_012001495v1   C 0 C 0
s aotNan1.NW_018494050v1      213475 1 -    285216 t
i aotNan1.NW_018494050v1   I 2 C 0
e dasNov3.JH561790             96353 6 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I
e saiBol1.JH378348            283556 0 -    375362 C
e otoGar3.GL873742           1577361 10049 -   2232465 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I
e calJac3.chr4             171457482 0 - 171630274 C
e colAng1.NW_012115566v1     1932367 0 -   3067355 C
e manLeu1.NW_012104165v1     2061961 324 +   2316924 I
e chlSab2.chr17             28372218 0 -  71996105 C

a score=1001483.000000
s hg38.chr6_GL000254v2_alt    213167 162 +   4827813 tttttttttttttgagatggagtc-ttgct-ctgtca--cccaggctggagtgtagtggtgtgatctcggctcactgcaacctctgcctcccaggttcaagtgattattttgcctcagacccttgaggtagctgggactacagtcatgcaccaccacacctggctc
s panTro5.chr6              29200648 162 + 175400573 tttttttttttttgagatggagtc-ttgct-ctgtca--cccaggctggagtgtagtggtgtgatctcggctcactgcaacctctgcctcccaggttcaagtgattattttgcctcacactcttgaggtagctgggactacagtcatgcaccaccacacctggctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29434654 162 + 173848474 ttttttttttttgtagatggagtc-ttgct-ctgtca--cccaggctggagtgtagtggtgtgatctcggctcactgcaacctctgcctcccaggttcaagtgattattttgcctcacactcttgaggtagctgggactacagtcatgcaccaccacacctggctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235380 162 +   6154872 tttttttttttttgagatggagtc-ttgct-ctgtca--cccaggctggagtgtagtggtgtgatctcagctcactgcaacccctgcctcccaggttcaagtgattattttgcctcagactcttgaggtagctgggactacagtcatgcaccaccacacctggctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74238366 162 + 122973662 tttttttttttttgagatggagtc-ttgct-ctgtca--cccaggctggagtgtagtggtgtgatcttggctcactgcaacctctgcctcccaggttcaagtgattctctggcctcagcctcctgaggtagatgggactacagtcatgtgccaccacacctagcaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29415598 162 + 172585720 tttttttttttttgagatgaagtc-ttgct-ctgtca--cccaggctggagtgcagtggtgtgatgtcggctcactgcagcctctgcctcccaggttcaagtgattctcttgcctcagcctcctgaagtagctgggactacagtcatgtaccaccacacttggcta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29076817 162 - 170955103 tttttttttttttgagatgaagtc-ttgct-ctgtca--cccaggctggagtgcagtggtgtgatgtcggctcactgcagcctctgcctcccaggttcaagtgattctcttgcctcagcctcctgaagtagctgggactacagtcatgtaccaccacacttggcta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2066360 166 -   2996164 tttttttttttttgagatgaagtctttgctcctgtcacgcccaggctggagtgcagtggtgtgatgtcggctcactgcagcctctgcctcccaggttcaagtgattctcttgcctcagcctcctgaagtagctgggactacagtcatgtaccaccacacttggcta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1928751 162 -   2157725 cttttttttttttgagatgaagtc-ttgct-ctgtca--cccaggctggagtgcagtggtgtgatctcggctcactgcagcctctgcctcccaggttcaagtgattctcttgcctcagcctcctgaagtagctgggactatagtcatgtaccgccacacttggcta
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28372218 160 -  71996105 --tttttttttttgagatgaagtc-ttgct-ctgtca--cccaggctggagtgcagtggtgtgatctcggctcactgcaacctctgcctcccaggttcaagtgattctcttgcctcagtctcctgaagtaggtgggactacagtcatgcgccaccacacttggcta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2062285 162 +   2316924 tttttttttttttgagatgaagtc-ttgct-ctgtca--cccaggctggagtgcagtggtgtgatctcggctcactgcagcctctgcctcccaggttcaagtgattctcttgcctcagcctcctgaagtagctgggactacagtcatgtaccaccacacttggcta
i manLeu1.NW_012104165v1   I 324 C 0
s colAng1.NW_012115566v1     1932367 155 -   3067355 -------ttttttgagatgaagtc-ttgct-ctgtca--cccaggctggagtgcagtggtgtgatctcggctcactacaacctctgcctcccaggttcaagtgattctcttgcctcagcctcctgaagtagctgggactacagtcatgtgccaccacacttggcta
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018494050v1      213476 150 -    285216 tttttttttttttgagacagggtc-ttgct-ctgttg--cccagggtgcagtacagtggcgcgatctcggcttactgcaacctccgcctcctgggttc-----------ctgcctcagattcctgaa-tagctgggattacaggtgtccaccaccacgtccagcta
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             96353   6 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I
e saiBol1.JH378348            283556   0 -    375362 C
e otoGar3.GL873742           1577361 10049 -   2232465 I
e cebCap1.NW_016108108v1      278773 983 -    373274 I
e calJac3.chr4             171457482   0 - 171630274 C

a score=266267.000000
s hg38.chr6_GL000254v2_alt    213329 40 +   4827813 atttttgtgtttttagtaga----gatgcggtttcatcatgttt
s panTro5.chr6              29200810 40 + 175400573 atttttgtgtttttagtaga----gatggggtttcatcatgttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29434816 40 + 173848474 atttttgtgtttttagtaga----gatggggtttcatcatgttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235542 40 +   6154872 atttttgtgtttttagtaga----gatggggtttcatcatgttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74238528 40 + 122973662 atttttgtatttttagtaga----gacagggtttcatcatggtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29415760 44 + 172585720 atttttgtatttttagtagagacggacggagtttcatcatgttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29076979 44 - 170955103 atttttgtatttttagtagagacggacggagtttcatcatgttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2066526 44 -   2996164 atttttgtatttttagtagagacggacggagtttcatcatgttg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1928913 44 -   2157725 atttttgtatttttagtagagacggacggagtttcatcatgttg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28372378 44 -  71996105 atttttgtacttgtagtagagacggacggagtttcatcgtgttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2062447 44 +   2316924 atttttgtatttttagtagagacggacggagtttcatcatgttg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1932522 40 -   3067355 atttttgtatttttggtaga----gacagagtttcatcatgttg
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108108v1      279756 40 -    373274 atttttgtatttttaccaga----gatgaggtttcaccttgttg
i cebCap1.NW_016108108v1   I 983 C 0
s aotNan1.NW_018494050v1      213626 40 -    285216 atttttgtatttataccaga----gacggggtttcaccttgttg
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             96353  6 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I
e saiBol1.JH378348            283556  0 -    375362 C
e otoGar3.GL873742           1577361 10049 -   2232465 I
e calJac3.chr4             171457482  0 - 171630274 C

a score=790893.000000
s hg38.chr6_GL000254v2_alt    213369 76 +   4827813 gccaggctggtctggaactcctgaccacaattgatttgcccacctctgcctcccaaaatgttgggattacaggtgg
s panTro5.chr6              29200850 76 + 175400573 gccaggctggtctggaactcctgaccacaattgatttgcccacctctgcctcccaaaatgttgggattacaggtgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29434856 76 + 173848474 gccaggctggtctggaactcctgaccacaactgatttgcccacctctgcctcccaaaatgttgggattacaggtgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235582 76 +   6154872 gccaggctggtctggaactcctgaccacaattgatttgcccacctctgcctcccaaaatgttgggattacaggtgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74238568 76 + 122973662 gccaggctggtctggaactgctgaccacaagtgattcgccgacctctgcctcccaaaatgttgggattacaggtgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29415804 76 + 172585720 gccaggctggtctggaactcctgactgcaagtgattcgcccacctctgcctcccaaaatgttgggattacaggtgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29077023 76 - 170955103 gccaggctggtctggaactcctgactgcaagtgattcgcccacctctgcctcccaaaatgttgggattacaggtgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2066570 76 -   2996164 gccaggctggtctggaactcctgactgcaagtgattcgcccacttctgcctcccaaaatgttgggattacaggtgg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1928957 76 -   2157725 gccaggctggtctggaactcctgactgcaagtgattcgcccacctctgcctcccaaaatgttgggattacaggtgg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28372422 76 -  71996105 gccaggctggtctggaactcctgaccacaagtgattcgcccacctctgcctcccaaaatgctgggattacaggtgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2062491 76 +   2316924 gccaggctggtctggaactgctgactgcaagtgattcgcccacctctgcctcccaaaatgttgggattacaggtgg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1932562 76 -   3067355 gccaggctggtctggaactcctgaccgcaagtgattcgcccacctctgcctcccaaaatgttgggattacaggcgg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171457482 76 - 171630274 gccaggctggtctggaactcctgaccgcaagtgattggcccacctctgccttccaaaatgttgggattacaggcag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            283556 76 -    375362 gccaggctggtctggaactcttgactgcaagtgatttgcgcacctctgccttccaaaatgtcgggattgcaggcag
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      279796 76 -    373274 gccaggctggtctggaactcctgaccacaagtaatttgctcacctctgccttccaaaatgttgggattgcaggcag
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      213666 76 -    285216 gccaggctggtctggaactcctgaccgcaagtgatttgcccacctctgccttccaaaatgttgggattgcaggcag
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790             96353  6 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I
e otoGar3.GL873742           1577361 10049 -   2232465 I

a score=317453.000000
s hg38.chr6_GL000254v2_alt    213445 31 +   4827813 gagccactggcctcgccCTGTTTTGCTTTAT
s panTro5.chr6              29200926 31 + 175400573 gagccactgGCCTCGCCCTGTTTTGCTTTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29434932 31 + 173848474 gagccactggcctcgccCTGTTTTGCTTTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235658 31 +   6154872 gagccactggcctcgccCTGTTTTGCTTTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74238644 31 + 122973662 gagccactggcctcgccCTGTTTTGCTTTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29415880 31 + 172585720 gagccactggccttgccCTGTTTTGCTTTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29077099 31 - 170955103 gagccactggccttgccCTGTTTTGCTTTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2066646 31 -   2996164 gagccactggccttgccCTGTTTTGCTTTAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1929033 31 -   2157725 gagccactggccttgccCTGTTTTGCTTTAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28372498 31 -  71996105 gagccactggccttgccCTGTTTTGCTTTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2062567 31 +   2316924 gagccactggccttgccCTGTTTTGCTTTAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1932638 31 -   3067355 gagccactggccttgccCTGTTTTGCTTTGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171457558 31 - 171630274 gagccaccAGTCTGGGCCTGTTTGGCTTTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            283632 31 -    375362 gagccaccAGTCTGGGCCTGTTTTGCTTTAT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      279872 31 -    373274 gagccaccAGTCTGGGCCTGTTTTGCTTTAT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      213742 31 -    285216 gagccaccAGTCTAGGCCCATTTTGCTTTAT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1587410 31 -   2232465 GATCCAAATGCCCTTTTCTAGTCTGCTTTAT
i otoGar3.GL873742         I 10049 C 0
e dasNov3.JH561790             96353  6 -    302817 I
e canFam3.chr35             25945274 2790 +  26524999 I

a score=2050931.000000
s hg38.chr6_GL000254v2_alt    213476 191 +   4827813 TTCTGCCTTTCCCTGTAAAGAGCTTTTCTTGGTAAATAAGCAGCTGAGA---------CATCTTGACACCTCCTGCCCTCCAGGTTCCCAGGGGCAGTCTGGGCCCAAGTTTT---CTTTCTTCTAGctgttccccagtttctctgcatcattcctccccact----------------gccatgtctcgatggccttcttctgcacaatggcctaatt
s panTro5.chr6              29200957 191 + 175400573 TTCTGCCTTTCCCCGTAAAGAGCTTTTCTTGGTAAATAAGCAGCTGAGA---------CATCTTGACACCTCCTGCCCTCCAGGTTCCCAGGGGCAGTCTGGGCCCAAGTTTT---CCTTCTTCTAGctgttccccagtttctctgcatcattcctccccact----------------gccatgtctcgatggccttcttctgcacaatggcctaatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29434963 191 + 173848474 TTCTGCCTTTCCCTGTAAAGAGCTTTTCTTGGTAAATAAGCAGCTGAGA---------CATCTTGACACCTCCTGCCCTCCAGGTTCCCAGGGGCAGTCTGGGCCCAAGTTTT---CTTTCTTCTAGctgttccccagtttctctgcatcattccgccccact----------------gccatgtctcgatggccttcttctgcacaatggcctaatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235689 191 +   6154872 TTCTGCCTTTCCCTGTAAAGAGCTTTTCTTGGTAAATAAGCAGCTGAGA---------CATCTTGACACCTCCTGCCCTCCAGGTTCCCAGGGGCAGTCTGGGCCCAAGTTTT---CTTTCTTCTAGctgttccccagtttctctgcatcattcctccccact----------------gccatgtctcgatggccttcttctgcacaatggcctaatt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74238675 207 + 122973662 TTTTGCTTTTCCCTGTAAAGAGCTTTTTTTGGTAAATAAGCAGCTGAGA---------CATCTTGACACCTCTTGCCCTCCAGGTTCCCAGGGGCAGTCTGGGCCCAAGTTTT---CTTTCTTCTAGCTGTTCCCCAGTTTCTCTGCATCATTCCTCCCCACCGCCACATAGTCACTAAGCCATGTCTTGATGGCCTTCTTCTGCACAATGGCCAAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29415911 207 + 172585720 TATTGCCTTTCCCTGTAAAGAGCTTCTTTTGGTAAATAAGCAGCTGAGA---------CATCTTGACACCTCCTGCCCTCCAGGTTCCCAGGGGCAGTCTGGGCCCAAATTTT---CTTTCTTCTAGCTGTTCCCCAGTTTCTCTGCACCATTCCTCCCCACTGCCACATAGTCACTAAGCCATGTCTGGATGGCCTTCTTCTGCACAATGGcctaatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29077130 207 - 170955103 TATTGCCTTTCCCTGTAAAGAGCTTCTTTTGGTAAATAAGCAGCTGAGA---------CATCTTGACACCTCCTGCCCTCCAGGTTCCCAGGGGCAGTCTGGGCCCAAATTTT---CTTTCTTCTAGCTGTTCCCCAGTTTCTCTGCACCATTCCTCCCCACTGCCACATAGTCGCTAAGCCATGTCTGGATGGCCTTCTTCTGCACAATGGcctaatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2066677 207 -   2996164 TATTGCCTTTCCCTGTAAAGAGCTTCTTTTGGTAAATAAGCAGCTGAGA---------CATCTTGACACCTCCTGCCCTCCAGGTTCCCAGGGGCAGTCTGGGCCCAAATTTT---CTTTCTTCTAGCTGTTCCCCAGTTTCTCTGCACCATTCCTCCCCACTGCCACATAGTCGCTAAGCCATGTCTGGATGGCCTTCTTCTGCACAATGGcctaatt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1929064 207 -   2157725 TATTGCCTTTCCCTGTAAAGAGCTTCTTTTGGTAAATAAGCAGCTCAGA---------CATCTTGACACCTCCTGCCCTCCAGGTTCCCAGGGGCAGTCTGGGCCCAAATTTT---CTTTCTTCTAGCTGTTCCCCAGTTTCTCTGCACCATTCCTCCCCACTGCCACATAGTCGCTAAGCCATGTCTGGATGGCCTTCATCTGCACAATGGcctaatt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28372529 207 -  71996105 TATTGCCTTTCCCTGTAAAGAGCTTCTTTTGGTAAATAAGCAGCTGAGA---------CATCTTGACACCTCCTGCCCTCCAGGTTCCCAGGGGCAGTCTGGGCCCAAATTTT---CTTTCTTCTAGCTGTTCCCCAGTTTCTCTGCACCATTCCTCCCCACTGCCACATAGTCGCTAAGGCATGTCTGGATGGCCTTCTTCTGCACAATGGcctaatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2062598 207 +   2316924 TATTGCCTTTCCCTGTAAAGAGCTTCTTTTGGTAAATAAGCAGCTGAGA---------CATCTTGACACCTCCTGCCCTCCAGGTTCCCAGGGGCAGTCTGGGCCCAAATTTT---CTTTCTTCTAGCTGTTCCCCAGTTTCTCTGCACCATTCCTCCCCACTGCCACATAGTCGCTAAGCCATGTCTGGATGGCCTTCATCTGCACAATGGcctaatt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1932669 196 -   3067355 TATTGCCTTTCCCTGTAAAGAGCTTCTTTTGGTAAATAAGCAGCTGAGA---------CATCTTGACACCTCGGGCCCTCCAGGTTCCTAGGGGCAGTCTGGGCCCAGATTTT---CTTTCTTCTAGCTGTTCCC-----------CACCATTCCTCCCCACTGCCACATAGTCGCTAAGCCATGTCTGGATGGCCTTCTTCTGCACAATGGcctaatt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171457589 203 - 171630274 TTCTGCCTTTCCCTGTAAAGAGCTT-TTTTGGTAAATGAGCAGCTGAGA---------CCTCTTGACACCTCCAGCCCTCCAGGTTCCCAGGGGCAGTTTGGGCCCAA---GT---CTTTCTTCTAGCTGTTCCCTAGCTTCTCTGCACCATTCCTTCCCACTGCCACGTTGTCACCGAGCTGTGTCTGCGTGGCCTCCTGCTGCACATGGGCCTGATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            283663 204 -    375362 TTCTGCCTTTCCCTTTAAAGAGCTT-TTTTGGTAAATGAGCAGCTGAGA---------CCTCTTGACACCTACTGCTCTCCAGGTTCCCAGGGGCACTGTGGGCCCAAGTCGT---CTTTCTTCTAGCTGTTCCCCAGC-TCTCTGCATCATCCATTCCCAGTGCCATG-TGTCACTGAGCTGTGTCTGCGTGGCCTTCTACTGCACATGGGCCTGATT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      279903 205 -    373274 TTCTGCCTTTCCCTGTAAAGAGCTT-TTTTGGTAAATGAGCAGCTGAGA---------CCTCTTGACACCTCCTGCCCTCCAGGTTCCCAGGGGCACTCTGGGCCCAAGTCGT---CTTTCTTCTAGCTGTTCTGCAGC-TCTCTGCACCATCCCTTCCCACTGCCACGTTGTCACTGAGCCATGTCTGCGTGGCCTCCTACTGCACATGGGCCTGATT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      213773 206 -    285216 TTCTGACTTTGCCTGTAAAGAGCTT-TTTTGGTAAATGAGCAGCTGAGA---------CCTCTTGACACCTCCTGCCCTCCAGGTTCCCAGGGGCAGTCTGGGCCCAAGTCTT---CTTTTTTCTAGCTGTTCCCCAGCTTCTCTGCACCATTCCTTCCCACTGCCACGTTGTCACTGAGCCACGTCTGTGTGGCCTCCTACTGCACATGGGCCTGATT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1587441 214 -   2232465 TTATGCCTTTACCTGTAAAGAGCTC-TGGGGGGAAGTGAACTGCTGAGAGGAATGAATCACCTTTACATCAGCTGCCCTCTGGTTTTCCATAGGAGGTTTGGGCCCAAGTCTT---CTTCCTTCTAGATGTTGCCTTGTTTCtccaggccattcctccccactgccacat-gtcactgggctgagtctgcacaggcttcttctgcacagtggcctactt
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             96359 149 -    302817 TTCCCGCTTTCCCGGTGTAGCGCGTGTTTGGGGAA----------GAAT---------TACCCTGAC------------CCGGGGTCCCA--GGCCGTCTGGCCCCAAGTCCTCTGCTTCCTTCTAAATGCCCCCC---CCCCCTGCAGCTTTCCCCACC----------------------------------CCTGCTACCGCCTGGGGACCTCGTT
i dasNov3.JH561790         I 6 C 0
e canFam3.chr35             25945274 2790 +  26524999 I

a score=690494.000000
s hg38.chr6_GL000254v2_alt    213667 59 +   4827813 tatgtttttgcatcacctcttcctccattctgactcattctttacataaagccagtgta
s panTro5.chr6              29201148 58 + 175400573 tatg-ttttgcatcacctcttcctccactctgactcattctttacataaagccagtgta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29435154 59 + 173848474 tatgtttttgcatcacctcttcctccactctgactcattctttacataaagccagtgta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235880 59 +   6154872 tatgtttttgcatcacctcttcctccactctgactcattctttacataaagccagtgta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74238882 59 + 122973662 TATGTTTTTGCATGATctcttcctccactctgactcattctttacataaagccagtgta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29416118 59 + 172585720 tatgtttttgcatcatctcttccttcactctgactcattgtttacataaagccagtgta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29077337 59 - 170955103 tatgtttttgcatcatctcttccttcactctgactcattctttacataaagccagtgta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2066884 59 -   2996164 tatgtttttgcatcatctcttccttcactctgactcattctttacataaagccagtgta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1929271 59 -   2157725 tatgtttttgcatcatctcttccttcactctgactcattctttacataaagccagtgta
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28372736 59 -  71996105 tatgtttttgcatcatctcttccttcactctgactcattctttacataaagccagtgta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2062805 59 +   2316924 tatgtttttgcatcatctcttccttcactctgactcattctttacataaagccagtgta
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1932865 59 -   3067355 tatgtttttgcatcatctcttcctccactctgactcattctttacataaagccagtgta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171457792 58 - 171630274 TATGCTTTCGAAT-ATCTCTTGCTCCACTCTGACTCATTCTTTACATAAAGCCAGTGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            283867 59 -    375362 TACAGTTTCACGTCATctcttgctccactctgactcattctttacataaagccagtgta
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      280108 59 -    373274 TACGCTTTCACGTCATctcttgctccactctgactcattctttacgtaaagccagtgta
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      213979 59 -    285216 TACGCTTTCGCATCATCTCTTGCTCCGCTCTGACGCATTCTTTACATAAAGCCAGTGTA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1587655 59 -   2232465 tatgtttttgcatcatctcttgccccattctgactcattctttccacgaaaccagagta
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25948064 49 +  26524999 tgtgctttgtcctcagctagtcctctgttcc--cccat--------caAGAGcagcatg
i canFam3.chr35            I 2790 C 0
s dasNov3.JH561790             96508 59 -    302817 TGAGATTTTGCATCCTCTCTTGGCCCCCTCTGACTTGTTCTGTAGAGGAAACCGGGGTA
i dasNov3.JH561790         C 0 I 15

a score=333708.000000
s hg38.chr6_GL000254v2_alt    213726 34 +   4827813 ctct-t--aaaagtaatctc--atcatgtcatttcttcc
s panTro5.chr6              29201206 34 + 175400573 ctct-t--aaaagtaatctc--atcatgtcatttcttcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29435213 34 + 173848474 ctct-t--aaaagtaatctc--atcatgtcatttcttcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235939 34 +   6154872 ttct-t--aaaagtaatctc--atcatgtcatttcttcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74238941 34 + 122973662 ctct-t--aaaagtaatctc--atcatgtcctttcttcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29416177 34 + 172585720 ctct-t--aaaagtaatctc--atcatgtcgttccttcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29077396 34 - 170955103 ctct-t--aaaagtaatctc--atcatgtcgttccttcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2066943 34 -   2996164 ctct-t--aaaagtaatctc--atcatgtcgttccttcc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1929330 34 -   2157725 ctct-t--aaaagtaatctc--atcatgtcgttccttcc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28372795 34 -  71996105 ctct-t--aaaagtaatctc--atcatgtcgttccttcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2062864 34 +   2316924 ctct-t--aaaagtaatctc--atcatgtcgttccttcc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1932924 34 -   3067355 ctct-t--aaaagtaatctc--atcatgtcgttccttcc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171457850 32 - 171630274 CTCT-T--AAAAGTAA--TC--ATCATGTCTTTCTTTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            283926 32 -    375362 ctcc-t--aaaagtca--tc--atcatgtcattccttcc
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      280167 32 -    373274 ctcg-t--aaaagtaa--tc--atcatgtcgttccttcc
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      214038 32 -    285216 CTCG-T--AAAAGTAG--TC--ATCATGTCGTTCCTTCT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1587714 37 -   2232465 atatgt--taaaatcacctctgattatgtcattcctttc
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25948113 38 +  26524999 atct-ttccaagattacctctgatcatgtaatttctctc
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             96567 15 -    302817 I

a score=1765750.000000
s hg38.chr6_GL000254v2_alt    213760 149 +   4827813 tgcttagaattcccagtggcttcacatTGCTGCTAGGGTGCAGTCAGCTCTCTGCACTACTAGCC---ATAACCTCTGAGCCTGTGAGTCACTGGTCTGTCCCTGCCTTCCTGTCCACCTCAGACCCCACCTTCATGAACACTCTCTTGAGC
s panTro5.chr6              29201240 149 + 175400573 tgcttagaattcccagtggcttcacatTGCTGCTAGGGTGCAGTCAGCTCTCTGCACTACTAGCC---ATAACCTCTGAGCCTGTGAGTCACTGGTCTGTCCCTGCCTTCCTGTCCACCTCAGACCCCACCTTCATCAACACTCTCTTGACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29435247 149 + 173848474 tgcttagaattcccagtggcttcacatTGCTGCTAGGGTGCAGTCAGCTCTCTGCACTACTAGCC---ATAACCTCTGAGCCTGTGAGTCACTGGTCTGTCCCTGCCTTCCTGTCCACCTCAGACCCCACCTTCATCAACACTCTCTTGAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5235973 149 +   6154872 tgcttagaattcccagtggcttcacatTGCTGCTAGGATGCAGTCAGCTCTCTGCACTACTAGCC---ATAACCTCTGAGCCTGTGAGTCACTGGTCTGTCCCTGCCTTCCTGTCCACCTCAGACCCCACCTTCATCAACACTCTCTTGAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74238975 149 + 122973662 tgcttagaattcccagtggcttcacatTGCTGCTAGGGTGCAGTCAGCTCTCTGCACTACTAGCC---ATAACCTTTGAGCCTGTGAGTCACTGGTCTGTCCCTGCCTTCTTGTCCACCTCAGCCCCCGCCTTCATCAACACTCTCTTGAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29416211 149 + 172585720 tgcttagaattcccagtggcttcacatTGCTGCTAGGGTGCCGTCAGCTCTCTGTACTACTAGCC---ATAACCTCTGAGCCTGTGAGTCACTGGTCTGTCCCTGCCTTCCTGTCCACCTCAGCCCCCACCCTCATCAACACTCTCTTGAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29077430 149 - 170955103 tgcttagaattcccagtggcttcacatTGCTTCTAGGGTGCCGTCAGCTCTCTGTACTACTAGCC---ATAACCTCTGAGCCTGTGAGTCACTGGTCTGTCCCTGCCTTCCTGTCCACCTCAGCCCCCACCCTCATCAACACTCTCTTGAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2066977 147 -   2996164 tgcttagaattcccagtggcttcacatTGCTGCTAGGGTGCCGTCAGCTCTCTGTACTACTAGCC---ATAACCTCTGAGCCTGTGAGTCACTGGTCTGTCCCTGCCTTTCTGTCCACCTCAGCCCCCACCCTCATCAACA--CTCTTGAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1929364 149 -   2157725 tgcttagaattcccagtggcttcacatTGCTGCTAGGGTGCAGTCAGCCCTCTGTACTACTAGCC---ATAACCTCTGAGCCTGTGAGTCACTGGTCTGTCCCTGCCTTCCTGTCCACCTCAGCCCCCACCCTCATCAACACTCTCTTGAGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28372829 149 -  71996105 tgcttagaattcccagtggcttcacatTGCTGCTAGGGTGCAGTCAGCTCTCTGTACTACTAGCC---ATAACCTCTGAGCCTGTGAGTCACTGGTCTGTCCCTGCCTTCCTGTCCACCTCAGCCCCTACCCTCATCAACACTCTCTTGAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2062898 149 +   2316924 tgcttagaattcccagtggcttcacatTGCTGCTAGGGTGCAGTCAGCCCTCTGTACTACTAGCT---ATAACCTCTGAGCCTGTGAGTCACTGGTCTGTCCCTGCCTTCCTGTCCACCTCAGCCCCCACCCTCATCAACACTCTCTTGAGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1932958 149 -   3067355 tgcttagaattcccagtggcttcacatTGCTGCTAGGGTGCAGTCAGCTCTCTGTACTACTAGCC---ATAACCTCTGAGCCTGTGAGTCACTGATCTGTCCCTGCCTTTCTGTCCACCCCAGCCCCCACCTTCATCAACACTCTCTTGAGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171457882 149 - 171630274 TCCTTAGAATTCCCACTGGCTTCACCTTGCTGCTCCGGTGCAGTCAGCTCTCTGCACTGCTAGCC---ATAACCTCGGAGCCCGTGAGTCTCTGCGCTGTCCCTGCCTTCCTGTCCGCCTCAGCTCCCATCTTCATCGACACTCTCTTGAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            283958 149 -    375362 tccttagaattcccagtggcttcccCTTGCTGCTCGGGTGCAGTCAGCTCTCTGTACTGCTAGCC---ATAACCTCTGAGCCTGTGAGTCGCTGGGCTGTCCCTGCCTTCCTGTCCACCTCGGCTCCCGTCTTCATCAACAGTCTCTTGAGC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      280199 149 -    373274 tccttagaatcccgagtggcttcccCTTGCTGCTCGGGTGCAGTCAGCTCTCTGCACTGCTAGCC---ATAACCTCTGAGCCTGTGAGTCGCTGGGCTGTCCCTGCCTTCCTGTCCACCTCAGCTCCCATCTTCATCAGCGCTCTCTTGAGC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      214070 149 -    285216 GCCTTAGAATTCCCAGTGGCTTCACCTTGCTGCTCGGCTGCAGTCAGCTCTCTGCACTGCTAGCC---ATAACCTCTGAGCCTGTGAGTCGCTGAGctgtccctgccttcctgtccacctcagctcccatcttcatcgacactctcttgagc
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1587751 145 -   2232465 tgcttaatattcccagtggcttcacattgctggtagggtgaagtctgtactctgcactgctagcc---ataatctctga----gttagtcattgctttgtccctgacttcctgtccacctcactcctcacctctactaacactctcctaagc
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25948151 143 +  26524999 tgcttaaaatccccagtgactttgcactgctgcaagagtgaggtctctattctccacccctggccataataatctcagagcctgtcagtcttccatgtg-ccctgtgttcctgtctccttc--------ttgccaccaattcttgccaaagc
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             96582  98 -    302817 TGCTTGCAATCCCCAGGGGCTTCCTTTGGCTGCTGAGGTAC--------------------AGCC--------------------------------TGTCCCTGCC-TCCTGCCC-CCTCGGCCCCCGGTGCCACAAACACTGCCGAGAGC
i dasNov3.JH561790         I 15 I 20

a score=619368.000000
s hg38.chr6_GL000254v2_alt    213909 56 +   4827813 TCTCTGTACACAAGCTGCTCAGGCCTTCTCTCAGGTGTCTGGAAGTGTTCTGCTC-T
s panTro5.chr6              29201389 56 + 175400573 TCTCTGTACACAAGCTGCTCAGGCCTTCTCTCAGCTGTCTGGAAGTGTTCTGCTC-T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29435396 56 + 173848474 TCTCTGTACACAAGCTGCTCAGGCCTTCTCTCAGGTGTCTGGAAGTGTTCTGCTC-T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5236122 57 +   6154872 TCTCTGTACACAAGCTGCTCAGGCCTTCTCTCAGGTGTCTGGAAGTGTTCTACTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74239124 56 + 122973662 TCTCTGTACACAAGCTGCTCAGGCCTTCTCTCAGGTGTCTGAAAGTGCTCTGCTC-T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29416360 56 + 172585720 TCTCTGCACACAAGCTGCTCAGGACTTCTCTCAGGTGTCTGAAATTGCTCTGCTC-T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29077579 56 - 170955103 TCTCTGCACACAAGCTGCTCAGGACTTCTCTCAGGTGTCTGAAATTGCTCTGCTC-T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2067124 56 -   2996164 TCTCTGCACACAAGCTGCTCAGGACTTCTCTCAGGTGTCTGAAATTGCTCTGCTC-T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1929513 56 -   2157725 TGTCTGTACACAAGCTGCTCAGGACTTCTCTCAGGTGTCTGAAAGTGCTCTGCTC-T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28372978 56 -  71996105 TGTCTGTACACAAGCTGCTCAGGACTTCTCTCAGGTGTCTGAAAGTGCTCTGCTC-T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2063047 56 +   2316924 TGTCTGTACACAAGCTGCTCAGGACTTCTCTCAGGTGTCTGAAAGTGCTCTGCTC-T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1933107 56 -   3067355 TCTCTGTACACAAGCTGCTCAGGACTTCTCTCAGGTGTCTGAAAGTGCTCTGCTC-T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171458031 56 - 171630274 TCTTTGCACACAAGCTGCTCAGGTCTCCTCTCCGGTCTCTGAAAGTGCTCTGCTC-T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            284107 56 -    375362 TCTTTGCACACAAGCTGCTCAGGTCTCCTCTCAGGTCTCTGAAAGTGCTCGGCTC-T
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      280348 54 -    373274 TCTTTGCACACAAGCTGCTCAGGTATCCTCTCAGGTCTCTGAAAATGCTCTG--C-T
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      214219 56 -    285216 tctttgcacacaagctgctcaggcctcctctcaggtctctgaaagtgctctgctc-t
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1587896 55 -   2232465 tctctgagctcaagctcctcaggccttctttcaggtctctgaaA-TGCTCTGCTT-T
i otoGar3.GL873742         C 0 I 774
s canFam3.chr35             25948294 56 +  26524999 tttctgcctgccagcacttcaggcctgcttgcaactatctggaagtgctgtcctc-t
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             96680 20 -    302817 I

a score=127570.000000
s hg38.chr6_GL000254v2_alt    213965 13 +   4827813 TTAATCTCCCTGG
s panTro5.chr6              29201445 13 + 175400573 TTAATCTCTCTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29435452 13 + 173848474 TTAATCTCTCTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5236179 13 +   6154872 TTAATCTCCCTGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74239180 13 + 122973662 TTGATCTTCCTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29416416 13 + 172585720 TTGATCTTCTTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29077635 13 - 170955103 TTGATCTTCTTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2067180 13 -   2996164 TTGATCTTCTTGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1929569 13 -   2157725 TTGATCTTCTTGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28373034 13 -  71996105 TTGATCTTCTTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2063103 13 +   2316924 TTGATCTTCTTGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1933163 13 -   3067355 TTGATCTTCTTGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171458087 13 - 171630274 TTGATCTTCCTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            284163 13 -    375362 TTGATCTTCCTGC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      280402 13 -    373274 TTGATCTTCCTGG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      214275 13 -    285216 tggatcttcctgg
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25948350 13 +  26524999 ttgctcctcctag
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             96680 20 -    302817 I
e otoGar3.GL873742           1587951 774 -   2232465 I

a score=45531.000000
s hg38.chr6_GL000254v2_alt    213978 4 +   4827813 AATG
s panTro5.chr6              29201458 4 + 175400573 AATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29435465 4 + 173848474 AATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5236192 4 +   6154872 AATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74239193 4 + 122973662 AATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29416429 4 + 172585720 AATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29077648 4 - 170955103 AATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2067193 4 -   2996164 AATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1929582 4 -   2157725 AATG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28373047 4 -  71996105 AATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2063116 4 +   2316924 AATG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1933176 4 -   3067355 AATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171458100 4 - 171630274 AATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            284176 4 -    375362 AATA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      280415 4 -    373274 AATA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      214288 4 -    285216 aata
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25948363 4 +  26524999 aacg
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             96700 4 -    302817 AGTG
i dasNov3.JH561790         I 20 C 0
e otoGar3.GL873742           1587951 774 -   2232465 I

a score=2872602.000000
s hg38.chr6_GL000254v2_alt    213982 276 +   4827813 CTGGAATCACATTTTTGtcca----------act---------aggccttt-agttttcagtttaaacatcacttcctgggagaagtcttctcta---atcccctggaagaggtcaTCTCCCTT--TATAATCCATGCTCTTGAAGAT-AGAGGGCAGGGTGTGATTTACAGTGTGCG-------ATTTACAGTGTGCATTATTTT-----------GTCTCACCTTACTTTT----CTCTATGTTCCCTTTATCTTGA-TTTAA----ATT---------------------------------------AACAT-------------------------------------------------------------TTTTCA---CTTTATTTTA---TAGTATAGTTGTGTAAATAACCTCGAATCTGTTTTT
s panTro5.chr6              29201462 266 + 175400573 CTGGAATCACATTTTTGtcca----------act---------aggccttt-agttttcagtttaaacgtcacttcctgggagaagtcttctcta---atcccctggaagaggtcaTCTCCCTT--TATAATCCATGCTCTTGAAGAT-AGAGGGCAGGGTGT--------------G-------ATTTACAGTGTGCATTATTTT-----------GTCtcaccttacttttcttcctttatgttccctttatcttga-tttaa----att---------------------------------------aacat-------------------------------------------------------------ttttca---ctttatctta---cagtatagttgtgtaaataacctcgaatctgttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29435469 266 + 173848474 CTGGAATCACATTTTTGtcca----------act---------aggccttt-agttttcagtttaaacgtcacttcctgggagaagtcttctcta---atcccctggaagaggtcaTCTCCCTT--TATAATCCATGCTCTTGAAGAT-AGAGGGCAGGGTGT--------------G-------ATTTACAGTGTGCATTATTTT-----------GTCtcgccttacttttcttcctttatgttccctttatcttga-tttaa----att---------------------------------------aacat-------------------------------------------------------------ttttca---ctttatctta---cagtatagttgtgtaaataacctcgaatctgttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5236196 266 +   6154872 CTGGAATCACATTTTTGtcca----------act---------aggccttt-agttttcagtttaaacatcacttcctgggagaagtcttctcta---atgccctggaagaggttaTCTCCCTT--TATAATCCATGCTCTTGAAGAT-AGGGGGCAGGGTGT--------------G-------ATTTACAGTGTGCATTATTTT-----------GTCtcaccttacttttcttcctttatgttccctttagcttga-tttaa----att---------------------------------------aacat-------------------------------------------------------------ttttca---ctttatctta---tagtatagttgtgtaaataacctcgaatctgttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74239197 270 + 122973662 CTGGAGTCACATTTTTGCCCA----------ACT---------AGGccttt-agttttcagtttaaacatcacttcctgggagaagtcttctcta---attccctggaagaggtcaTCTCCCTT--TATAATCCGTGCTCTTGAAGAT-AGTGGGCGGGGTGT--------------G-------ATTTACAGTGTGCATTATTTT-----------GTCTCACGTTACTTTTCCTCCTTTATGTTCCCTTTATCTTGA-TTTAAATATATT---------------------------------------AACAT-------------------------------------------------------------TTTTCA---CTTTATCTTA---TAGTATAGTTGTGTAAATAACCTCGAATCTGTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29416433 270 + 172585720 CTGGAGTCACATTTTCGtcca----------act---------aggccttt-agttttcagttgaaacatcacttcctgggagaagtcttctcta---agctcctggaaggggtcaTCTCCCTT--TATAATCCATGCTCTTGAAGAC-AGGGGACGGAGTGT--------------G-------ATTTGCAGTGTGCATTATTTT-----------GTCTCACCTTACTTTTCTTCCTCTGTGTTCTCTTTATCTTGA-TTTAAATCTATT---------------------------------------AACAT-------------------------------------------------------------TTTTCA---CTTTATCTTA---TAGTATAGTTGTGTAGATAACCTTGAATCTGTTTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29077652 270 - 170955103 CTGGAGTCACATTTTCGtcca----------act---------aggccttt-agttttcagttgaaacatcacttcctgggagaagtcttctcta---agctcctggaaggggtcaTCTCCCTT--TATAATCCATGCTCTTGAAGAC-AGGGGGCGGAGTGT--------------G-------ATTTGCAGTGTGCATTATTTT-----------GTCTCACCTTACTTTTCTTCCTCTGTGTTCTCTTTATCTTGA-TTTAAATCTATT---------------------------------------AACAT-------------------------------------------------------------TTTTCA---CTTTATCTTA---TAGTATAGTTGTGTAGATAACCTTGAATCTGTTTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2067197 270 -   2996164 CTGGAGTCACATTTTCGtcca----------act---------aggccttt-agttttcagttgaaacatcacttcctgggagaagtcttctcta---agctcctggaaggggtcaTCTCCCTT--TATAATCCATGCTCTTGAAGAC-AGGGGGCGGAGTGT--------------G-------ATTTGCAGTGTGCATTATTTT-----------GTCTCACCTTACTTTTCTTCCTCTGTGTTCTCTTTATCTTGA-TTTAAATCTATT---------------------------------------AACAT-------------------------------------------------------------TTTTCA---CTTTATCTTA---TAGTATAGTTGTGTAGATAACCTTGAATCTGTTTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1929586 270 -   2157725 CTGGAGTCACATTTTTGtcca----------act---------aagccttt-agttttcagtttaaacatcacttcctgggagaagtcttctcta---atctcctggaaggggtcaTCTCCCTT--TATAATCCATGCTCTCGAAGAC-AGGAGGCGGAGTGT--------------G-------ATTTACAGTGTGCATTATTTT-----------GTCtcaccttacttttcttcctctgtgttctctttatcttga-tttaaatctatt---------------------------------------aacat-------------------------------------------------------------ttttca---ctttatctta---tagtatagttgtgtagataaccttgaatctgttttg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28373051 270 -  71996105 CTGGAGTCACATTTTTGtcca----------act---------aggccttt-agttttcagtttaagcatcacttcctgggagaagtcttctcta---atctcctggaaggggtcaTCTCCCTT--TATAATCCATGCTTTTGAAGAC-AGGGGGCGGAGTGT--------------G-------ATTTACAGTGTGCATTATTTT-----------GTCTCACCTTACTTTTCTTCCTCTGTGTTCTCTTTATCTTGA-TTTAAATCTATT---------------------------------------AACAT-------------------------------------------------------------TTTTCA---CTTTATCTTA---TAGTATAGTTGTGTAGATAACCTTGAATCTGTTTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2063120 270 +   2316924 CTGGAGTCACATTTTTGtcca----------act---------aggccttt-agttttcggtttaaacatcacttcctgggagaagtcttctcta---atctcctggaaggggtcaTCTCCCTT--TATAATCCATGCTCTCGAAGAC-AGGGGGCGGGGTGT--------------G-------ATTTACAGTGTGCATTATTTT-----------GTCTCACCttacttttctttctctgtgttctctttatcttga-tttaaatctatt---------------------------------------aacat-------------------------------------------------------------ttttca---ctttatcttA---TAGTATAGTTGTGTAGATAACCTTGAATCTGTTTTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1933180 270 -   3067355 CTGGAGTCACATTTTTGTCCA----------ACT---------AGGCCTTT-AGTTTTCAGTGTAAACATCACTTCCTGGGAGAAGTCTTCTCTA---ATCTCCTGGAAGAGGTCATCCCCCTT--TATAATCCATGCTCTTGAAGAC-AGGGGGCGGAGTAT--------------G-------ATTTACAGTGTGCATTATTTT-----------GTCTCACCTTACTTTTCTTCCTCTATGTTCTCTTTATCTTGA-TTTAAATCTATT---------------------------------------AACAT-------------------------------------------------------------TTTTCA---CTTTATCTTA---TAGTATAGTTGTGCAGATAACCTCGAATCTGTTTTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171458104 252 - 171630274 CTGGAGCTACAGTTTTGTCCA----------GCT---------AAGCCTTT-AGTTTTCGGCTTAAAGATCACTTCCTGGGAG--CTCTTCTCT----ATCTGCTGGAAGAGGTC-----------TATGACCCATGCTCTTCAAGGT-AG-CGGGGGGATGT--------------G-------ATTTACAGTGTGTGTTTTCTT-----------GTCTC-----ACTTTTCTTCTTCTATGATCCATTTATCCTGA-TTTAAATCTATT---------------------------------------AACAT-------------------------------------------------------------TTTTCG---CTTTATCTTA---CAGTATAGTTGTGTAGACAACCTCAAATCTGTTTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            284180 363 -    375362 CTGGAGTCACATTTTTGtcca----------gct---------aagcctgt-agttttcagcttaaagatcccttcctgggagaaatcttctcta---atctgctggaagaggtcatcgccctT--TATAACCCATGCTCTTGAAGGT-AG-GGGTGGGATGT--------------G-------ATTTATAGTGTGCATTAT-TT-----------GTCTC-----ACTTTTCTTCTTCTATGTTCCCTTTATCCCGA-TTTAAATCTAttttttttaattgcattttaggttttggggtacatgtgatgaacatgcaagattgttgcataggtacacacttggcagtgtggtttgctgATTTAAATCTATTAACATTTTCA---CTTTATCTTA---TAGTATAGTTGTGTAGATAACCTCAAATCTGTTTGT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      280419 264 -    373274 CTGGAGTCGCATTTTTGtcca----------gct---------aaaccttt-agttttcagcttaaagatcccttcctgggagaagtcttctcta---atctgccggaagaggtgatcgccctT--TATGACCCATGCTCTTTAAGGT-AG-GGGCGGGATGT--------------G-------ATTTACAGTGCGCATTATTTT-----------TTCTC-----ACTTTTCTTCTTCTATGTTCCATTTATCCAGA-TTTAAATCTATT---------------------------------------AACAT-------------------------------------------------------------TTTTCA---CTTTATCTTA---TAGTATAGTTGTGTAGATAACTTCAAATCTGTTTTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      214292 264 -    285216 ctggagtcagatttttgtcca----------gct---------aagccttt-agttttcagcttaaagatcacttcctgggagaagtcttctcta---atctgctggaagaggtcatcgccctT--TATGACCCACGCTCTTGAAGGT-AG-GGGTGGGATGT--------------G-------ATTTACAGTGTGCATTATTTT-----------GTCTC-----ACTTTTCTTCTTCTATGTTCCATTTATCCTGA-TTTAAATCTATT---------------------------------------AACAT-------------------------------------------------------------TTTTCA---TTTTATCTTA---TAATATAGTTGTGTAGGTAACCTCAAATCTGTTTTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1588725 257 -   2232465 ctggaattacatttttgtccaattaattattact---------aagcttttcagttctcagtttatgtatcacttactgggagaagtctt---ta---aacccctggaagaagtcatttccctc--cct--------ctCATGGAGATGAGGGAGTGGAATAT--------------A-------ATTTACATCTTGCATAATTTT-----------GTCTCACCTTAATTTTCTACATCTATATTCCCTGTA--CTGA-TTTAAATCTAAT---------------------------------------AACAT-------------------------------------------------------------AGATT-----------------TAATGCAGTTGTGTAG-TCACCTCAAATCTGGTTTA
i otoGar3.GL873742         I 774 C 0
s canFam3.chr35             25948367 284 +  26524999 ctAGAGCCACGTTTCTGCGCA----------ACTTATCATATGAAGCCTTT-CATTCTCAGTTTAAACAACACTTTCTGGGAGAAGTCTCTTCTC---AGCCCCTTGAGGAGGTCATCTCCATT--TACAACCTGCTCTATTGGAAGT-ATGTGGGAGGTTGG--------------GGGGCACTATTTATAGTATGCATACTTCT-----------TTCTT-----AATTTTCTACCTCTATTCTCCCTTTATCCTGA-CTTAAATCTATT---------------------------------------AACTT-------------------------------------------------------------CTTCCA---TTTTATCTTATTGTACTACAGTTGTGAAGACCACCTCAAATTTGCCTTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             96704 266 -    302817 GTGGCGCCGCACTTTTGTCTG----------ATT---------AAGC-TTC-AGCTCTCAGTTT---------------GAAGAAGTCTTCCCTATCTCCCCCCTGCAGGAAATCCCCCCCCCCCATATAAGCCCATCTTCTGGGGAT---------GTACAG--------------A-------GTTCATGGTATACATAATTTTCTTCCCCATTAGTCTCACCTTAATTTTCTTTCTCTATATTCCCATTGCCTTGATTTTAGATCTATT---------------------------------------CACAT-------------------------------------------------------------TTTCCATTTTTTTTTCTTA---TGGTGTAGCTGTGTAGGCCACCTCAAATCCAttttt
i dasNov3.JH561790         C 0 I 145

a score=87765.000000
s hg38.chr6_GL000254v2_alt    214258 10 +   4827813 CAAT------AGTAGC-----------------------------------
s panTro5.chr6              29201728 10 + 175400573 caat------agtagc-----------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29435735 10 + 173848474 caat------agtagc-----------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5236462 10 +   6154872 cagt------agtagc-----------------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74239467 10 + 122973662 CAAT------AGTAGC-----------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29416703 10 + 172585720 CAAT------AGTAGC-----------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29077922 10 - 170955103 CAAT------AGTAGC-----------------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2067467 10 -   2996164 CAAT------AGTAGC-----------------------------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1929856 10 -   2157725 caat------agtagc-----------------------------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28373321 10 -  71996105 CAAT------AGTAGC-----------------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2063390 10 +   2316924 CAAT------AGTAGC-----------------------------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1933450 10 -   3067355 CAAT------AGTAGC-----------------------------------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171458356 10 - 171630274 GAAT------AGTAGC-----------------------------------
i calJac3.chr4             C 0 I 1248
s saiBol1.JH378348            284543 10 -    375362 GAAT------AGTAGC-----------------------------------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      280683 10 -    373274 GAAT------AGTAGC-----------------------------------
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      214556 10 -    285216 GAAT------AGTAGC-----------------------------------
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1588982 10 -   2232465 GGAT------AGTAGC-----------------------------------
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25948651  9 +  26524999 -ACT------GGTGGC-----------------------------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             97115 51 -    302817 caactgcttgagtcacatccattcccTCAAATTCATTTTTGGATAAGTGAT
i dasNov3.JH561790         I 145 C 0

a score=498188.000000
s hg38.chr6_GL000254v2_alt    214268 40 +   4827813 ATAAATAAATGCACGATCAGAAATGT----ACATGACAACCATT
s panTro5.chr6              29201738 43 + 175400573 ataaataaatGCACGATCAGAAATGT-ACCACATGACAACCATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29435745 43 + 173848474 ataaataaatGCACGATCAGAAATGT-ACCACATGACAACCATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5236472 43 +   6154872 ataaataaatGCACGATCAGAAATGT-ACCACATGACAACCATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74239477 43 + 122973662 ATAAATAAATGCACGATCAGAAATGT-ACCACATGACAACCATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29416713 43 + 172585720 ATAAATGCATGCCTGATCAGAAATGT-ACCACATGACAACCATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29077932 43 - 170955103 ATAAATGCATGCCTGATCAGAAATGT-ACCACATGACAACCATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2067477 43 -   2996164 ATAAATGCATGCCTGATCAGAAATGT-ACCACATGACAACCATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1929866 43 -   2157725 ataaataaatGCCTGATCAGAAATGT-ACCACATGACAACCATT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28373331 43 -  71996105 ATAAATAAATGCCTGATCAGAAATGT-ACCACATGACAACCATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2063400 43 +   2316924 ATAAATAAATGCCTGATCAGAAATGT-ACCACATGACAACCATT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1933460 43 -   3067355 ATAAATAAATGCATGATCAGAAATGT-ACCACATGACAACCATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171459614 43 - 171630274 ATAAATAAATGCAAGATCAGAAACAC-Accacatgacaaccatt
i calJac3.chr4             I 1248 C 0
s saiBol1.JH378348            284553 43 -    375362 TTAAATAAATGCAAGATCAGAAACAC-ACTACATGACAACCATT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      280693 43 -    373274 ATAAATAAATGCAGGATCAGAAACAC-ACCACATGACAGCCATT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      214566 43 -    285216 ATAAATAAATGCAAGATCAGAAACAC-ACCACATGACAACCATT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1588992 42 -   2232465 ATGAATAAATATGTGATTAG-AATGT-ACCACGTGACAGTCATG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25948660 43 +  26524999 ATGAATAAATGCATAATTAGAAACGA-ATCTCATGACAATCACT
i canFam3.chr35            C 0 I 205
s dasNov3.JH561790             97166 44 -    302817 AGGGATAAATACATAATTAGAAATGTAAATTTAAAACAATCCTT
i dasNov3.JH561790         C 0 C 0

a score=392626.000000
s hg38.chr6_GL000254v2_alt    214308 40 +   4827813 GTGCTAGACCTAGCCTTTG----AGGGATTTCTGCTGTGAGAT---------T
s panTro5.chr6              29201781 40 + 175400573 GTGCTAGCCCTAGCCTTTG----AGGGATTTCTGTTGTGAGAT---------T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29435788 40 + 173848474 GTGCTAGCCCTAGCCTTTG----AGGGATTTCTGTTGTGAGAT---------T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5236515 40 +   6154872 GTGCTAGACCTAGCCTTTG----AGGGATTTCTGTTGTGAGAT---------T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74239520 53 + 122973662 GTGCTAAACCTAGCCTTTGAGGAAGGGATTTCTGCTGTGAGATTTAAGGAAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29416756 53 + 172585720 GTGCTAAACCTAGCCTTTGAGGAAGGGATTTCTGTTGTGAGATTTAAGGAAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29077975 53 - 170955103 GTGCTAAACCTAGCCTTTGAGGAAGGGATTTCTGTTGTGAGATTTAAGGAAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2067520 53 -   2996164 GTGCTAAACCTAGCCTTTGAGGAAGGGATTTCTGTTGTGAGATTTAAGGAAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1929909 53 -   2157725 GTGCTAAACCTAGCCTTTGAGGAAGGGATTTCTGTTGTGAGATTTAAGGAAGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28373374 53 -  71996105 GTGCTAAACCTAGCCTTTGAGGAAGGGATTTCTATTGTGAGATTTAAGGAAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2063443 53 +   2316924 GTGCTAAACCTAGCCTTTGAGGAAGGGATTTCTGTTGTGAGATTTAAGGAAGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1933503 53 -   3067355 GTGCTAAACCTAGCCTTTGAGGAAGGGATTTCTGTTGTGAGATTTAAGGAAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171459657 43 - 171630274 gtgctagacctggcctttgagg-aaggatttctgtcctcagatt---------
i calJac3.chr4             C 0 I 8
s saiBol1.JH378348            284596 43 -    375362 GTGCTAGACCTAACCTTTGAGG-AGGGGTTTCTGTCGTCAGATT---------
i saiBol1.JH378348         C 0 I 369
s cebCap1.NW_016108108v1      280736 43 -    373274 GTGCTAGACCTAGCCTTTGAGG-AAGGGTTTCTGTCGTCAGATT---------
i cebCap1.NW_016108108v1   C 0 I 9
s aotNan1.NW_018494050v1      214609 43 -    285216 GTGCTAGACCTAGCCTTTGAGG-AAGGGTTTCTGTTGTCAGATT---------
i aotNan1.NW_018494050v1   C 0 I 9
s otoGar3.GL873742           1589034 44 -   2232465 GTGTTAAAACCAGCCTTCCAGGAAGACATTTCTGTTGCAGGATT---------
i otoGar3.GL873742         C 0 I 9
s dasNov3.JH561790             97210 43 -    302817 GTTTTAAATCCAATCTTAGAGG-GAGAAATGCTGTTGTAAGATT---------
i dasNov3.JH561790         C 0 I 9
e canFam3.chr35             25948703 205 +  26524999 I

a score=2087095.000000
s hg38.chr6_GL000254v2_alt    214348 215 +   4827813 AAAGTGGTCAAGAGATTAACAAACTTGTCTAAAGTGGCACAAGCAAAATGGTTAAAATACAGTATTCTAAATGAT---CCACTTTACAATAAG------AATAATTGTGATAACACCTAATTTTCATGGAAATGT---------------CAC---------CAAGCGTTTGCTTACAT-----------------TATCTCGTTTAATTTGCAAAGTAAGG-TCATGAGATTTTGC-TTGTTTTT---CCTCAACATTTTGTAACCTGA
s panTro5.chr6              29201821 210 + 175400573 AAAGTGGTCAAGAGATTAACAAACTTGTCTAAAGTGGCACAAGCAAAATGGTT-------AGTGTTCTAAATGAT---CCATTTTACAATAAGAAG--TAATAATTGTGATAACACCTAATTTTCATGGAAATGT---------------CAC---------CAAGCGTTTGCTTACAT-----------------TATCTCATTTGATTTGC--AGTTAGG-TCATGAGATTTTGC-TTGTTTTT---CCTCAACATTTTGTAACCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29435828 210 + 173848474 AAAGTGGTCAAGAGATTAACAAACTTGTCTAAAGTGGCACAAGCAAAATGGTT-------AGTGTTCTAAATGAT---CCATTTTACAATAAGAAG--TAATAATTGTGATAACACCTAATTTTCATGGAAATGT---------------CAC---------CAAGCGTTTGCTTACAT-----------------TATCTCATTTGATTTGC--AGTTAGG-TCATGAGATTTTGC-TTGTTTTT---CCTCAACATTTTGTAACCTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5236555 207 +   6154872 AAAGTGGTCAAGAGATTAAGAGACTTGTCTAAAGTGGCACAACCGAAATGGGT-AAATACAGTGTTCTAAATGAT-------TTTACAAT---------AATAATTGTGATAACACCTAATTTTCACGGAAATGT---------------CAC---------CAAGCGTTTGCTTACAT-----------------TATCTCATTTAATTTGCAAAGTTAGT-TCATGAGATTTTGG-TTGTTTTT---CCTCAGCATTTTGTAACCTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74239573 217 + 122973662 AAAGTGGTGGAGAGATTAAGAAACTTGTCTAAAGTGGCACAACCAAAATGGTT-AAATACAGTGTTCTAAATGAT---CTATTTTACAATAATAAG--TAATAATTGTGATAACACCTAATTTTCATGGAAATGT---------------CAG---------CAAGAGTTTGCTTACAT-----------------TATCTCATTTAATTTGCAAAGTTAGG-TCATGAGATTATGC-TTGTTTTT----CTCAACATTTTGTAACCTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29416809 219 + 172585720 GAAGTGGTTGAGAGATTAAGAAACTTGTCTAAAGTGGCACAACCAAAGTGGTT-AAATACATTGTTCTAAATGAT---CTATTTTACAATAATAAGATTAATAATTGTGATAACACTTAATTTTCGCGGAAATGT---------------CAG---------CAGGAGTTTGCTTATAT-----------------TATCTCAATGAATTTGCAAAGTTAAG-TCCTGAGATTATGC-TTGTTTTT----CTCAACATTTTGTAACCTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29078028 219 - 170955103 GAAGTGGTTGAGAGATTAAGAAACTTGTCTAAAGTGGCACAACCAAAGTGGTT-AAATACATTGTTCTAAATGAT---CTATTTTACAATAATAAGATTAATAATTGTGATAACACTTAATTTTCGCGGAAATGT---------------CAG---------CAGGAGTTTGCTTATAT-----------------TATCTCAATGAATTTGCAAAGTTAAG-TCATGAGATTATGC-TTGTTTTT----CTCAACATTTTGTAACTTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2067573 219 -   2996164 GAAGTGGTTGAGAGATTAAGAAACTTGTCTAAAGTGGCACAACCAAAGTGGTT-AAATACATTGTTCTAAATGAT---CTATTTTACAATAATAAGATTAATAATTGTGATAACACTTAATTTTCGCGGAAATGT---------------CAG---------CAGGAGTTTGCTTATAT-----------------TATCTCAATGAATTTGCAAAGTTAAG-TCATGAGATTATGC-TTGTTTTT----CTCAACATTTTGTAACCTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1929962 219 -   2157725 GAAGTGGTTGAGAGATTAAGAAACTTGTCTAAAGTGGCACAACCAAAGTGGTT-AAATACAGTGTTCTAAATGAT---CTATTTTACAATAATAAGATTAATAATTGTGATAACACTTAATTTTCACGGAAATGT---------------CAG---------CAGGAGTTTGCTTATAT-----------------TATCTCAATGAATTTGCAAAGTTAAG-TCATGAGATTATGC-TTGTTTTT----CTCAACATTTTGTAACCTAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28373427 219 -  71996105 GAAGTGGTTGAGAGATTAAGAAACTTGTCCAAAGTGGCACAACCAAAATGGTT-AAATACAGTGTTTTAAATGAT---CTATTTTACAATAAGAAGATTAATAGTTGTGATAACACTTAATTTTCACGGAAATGT---------------CAG---------CAGCAGTTTGCTTATAT-----------------TATCTCAATGAATTTGCAAAGTTAAG-TCATGAGATTATGC-TTGTTTTT----CTCAACATTTTGTAACCTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2063496 219 +   2316924 GAAGTAGTTGAGAGATTAAGAAACTTGTCTAAAGTGGCACAACCAAAGTGGTT-AAATACAGTGTTCTAAATGAT---CTATTTTACAATAATAAGATTAATAATTGTGATAACACTTAATTTTCACGGAAATGT---------------CAG---------CAGGAGTTTGCTTATAT-----------------TATCTCAATGAATTTGCAAAGTTAAG-TCATGAGATTATGC-TTGTTTTT----CTCAACATTTTGTAACCTAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1933556 216 -   3067355 GAAGTGGTTGAGAGATTAAGAAACTTGTCTAAAGTGGCACAACCAAAATGGTT-AAATACAGTGTTCTAAATGAT---CTATTTTACAAT---AAGATTAACAATTGTGATAACACTTAATTTTCACGGAAATAT---------------CAG---------CAAGAGGTTGCTTATAT-----------------TATCTCATTGAATTTGCAAAGTTAGG-TCATGAGATTATGC-TTGTTTTT----CTCAACATTTTGTAACCTAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171459708 222 - 171630274 aacgtggttgagagcttaagtaacttgtctaaagtggcacaatgaaaatggcg-aaATACAGTGTTTTAAATGATCTTCTGTTTTACAATAGTATGAGTAATGATTGTGATAAAACCTAATTTTCATTGAACCGT---------------CAG---------CAAGAGTTTGCTTACAT-----------------TATCTCATTTAATTTGCAAAGTCGGG-TCGTGAGATTATGC-TTGTTTTT----CCCAACATTTTGTAAGCTGA
i calJac3.chr4             I 8 C 0
s saiBol1.JH378348            285008 222 -    375362 AAAGTGGTTgagagcttaagtaacttgtctaaagtggcacaacaaaaatggcT-AAATATGGTGTTTTAAATGATCTTCTGTTTTACAATAGTATGAGTAATGATTGTAATAAAACCCAATTTTCACTGAACCGC---------------CAG---------CAAGAGTTTGCTTACAT-----------------TATCTCGTTTAATTTGCAAAGTCAAG-TCACGAGATTATGC-TTGTTTTT----CCCAACATTTTGTAAGTTGA
i saiBol1.JH378348         I 369 C 0
s cebCap1.NW_016108108v1      280788 222 -    373274 AAAGTGGTTGAGAGCTTAAGTAACTGGTCTAAAGTGGCACAACGAAAATGGCT-AAATATAGTGTTTTAAATGATCTTCTGTTTTACAATAGTATGAGTAATGGTTGTGATAAAACCTAATTTTCATTGAACCAT---------------CAG---------GAAGAGTTTGCTTACAT-----------------TATCTTATTTAATTTGCAAAGTCAGG-TCATGAGATTATGC-TTGTTTTT----CCCAACATTTTATAAGCCGA
i cebCap1.NW_016108108v1   I 9 C 0
s aotNan1.NW_018494050v1      214661 222 -    285216 AAAGTGGTTgagagcttaagtaacttgtctaaagtgccgcaacgaaaatggcT-AAATATAGTGTTTTAAATGATCTTCTGTTTTACAATAGTATGAGTAATGATTGTGATAAAACCTAATTTTCATTGAACCGT---------------CAG---------CAAGAGTTTGCTTACAT-----------------TATCTCATTTAATTTGCAAAGTCAGG-TCATGAGATTATGT-TTGTTTGT----CCCAACATTTTGTAAGCTGA
i aotNan1.NW_018494050v1   I 9 I 195
s otoGar3.GL873742           1589087 231 -   2232465 AAAGTAGATGAGAGATTAAGTCGTTTATCTAAAGTGACACAACCAAAACGACT-AAATATAACATCCCAAATTATTTTTTATTTTACAATAATa---------------gtaacacccaattttcattgaactgtttag----catgttccagacatgattttaagagtttacttgcag-----------------tatcttatttaatttaaaaactgagg-tcatgaaatcatac-ctgtttatttctcttaacatcttgtaacctaa
i otoGar3.GL873742         I 9 C 0
s dasNov3.JH561790             97262 265 -    302817 AAAGTGGATGAAAGATTAAATAATTTGTTCAGGGCTGCACAACCAGAACGATT-AAATTCTGTGCTCTAATTGATCTTCTATTTTACAATACGAGTGAAAGTGATAATAACAACTACTAATTTTCGTTGAATTGTTCGGTCAACATGCCCCAGGCATTATTCCAAGAGTTTACTATTATAGCAAGTAAACCCGGGCTATGGGATGGAATTTGGAAACTCAAGTTTATGAGATTATACTTTGCCTAT----CTAAGCATCTTGTAACCTGT
i dasNov3.JH561790         I 9 C 0
e canFam3.chr35             25948703 205 +  26524999 I

a score=143672.000000
s hg38.chr6_GL000254v2_alt    214563 18 +   4827813 ACGTTTTCTCAAGAGCAT
s panTro5.chr6              29202031 18 + 175400573 ACGTTTTCTCGAGAGCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29436038 18 + 173848474 ACGTTTTCTCGAGAGCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5236762 18 +   6154872 ACGTTTTCTCCAGAGCAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74239790 18 + 122973662 ACtttttcttcagagcat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29417028 17 + 172585720 AC-TTTTATTGAGAGCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29078247 17 - 170955103 AC-TTTTATTGAGAGCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2067792 17 -   2996164 AC-TTTTATTGAGAGCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1930181 17 -   2157725 AC-TTTTATTGAGAGCAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28373646 17 -  71996105 AC-TTTTATTGAGAGCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2063715 17 +   2316924 AC-TTTTATCGAGAGCAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1933772 17 -   3067355 AC-TTTTATTGAGAGCAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171459930 18 - 171630274 ACttcttcttgagagcat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            285230 18 -    375362 ACTTTTTCTTGAGAGCAT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      281010 18 -    373274 ACTTTTTCTTGAGAGCAT
i cebCap1.NW_016108108v1   C 0 I 178
s otoGar3.GL873742           1589318 18 -   2232465 actttttcttgGGAGCAT
i otoGar3.GL873742         C 0 I 1
s dasNov3.JH561790             97527 18 -    302817 GCTTCTTCTGGAGAGCAT
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25948703 205 +  26524999 I
e aotNan1.NW_018494050v1      214883 195 -    285216 I

a score=261416.000000
s hg38.chr6_GL000254v2_alt    214581 35 +   4827813 GTGTTACAGTGACTGTTTAAAC------AGTGTAATTTGTC
s panTro5.chr6              29202049 35 + 175400573 TTGTTACAGTGGCTGTTTAAAC------AGTGTAATTTGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29436056 35 + 173848474 TTGTTACAGTGGCTGTTTAAAC------AGTGTAATTTGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5236780 35 +   6154872 TTATTACAGTAGCTATTTCAAC------AGTGTAATTTGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74239808 37 + 122973662 ttatcacagtggctgtttaaacag----agtgtaatttgtc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29417045 37 + 172585720 TTATCACAATGGCTGTTTAAACAG----AGTGTAATTTGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29078264 37 - 170955103 TTATCACAATGGCTGTTTAAACAG----AGTGTAATTTGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2067809 37 -   2996164 TTATCACAATGGCTGTTTAAACAG----AGTGTAATTTGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1930198 37 -   2157725 TTATCACAATGGCTGTTTAAACAG----AGTGTAATTTGTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28373663 37 -  71996105 TTATCACAATGGCTGTTTAAACAG----AGTGTAATTTGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2063732 37 +   2316924 TTATCACAATGGCTGTTTAAACAG----AGTGTAATTTGTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1933789 37 -   3067355 TTATCACATTGGCTGTTTAAACAG----AGTGTAATTTGTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171459948 41 - 171630274 tgatcaaaatggctatttaaacagttatagtataatttgtc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            285248 41 -    375362 TGACCAAAATGGCTATTTAAACAGTTACAGtataatttgtt
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1589337 41 -   2232465 TAATCACAATGGCTGCTTAAACAGTTATGGTATCATTTCTG
i otoGar3.GL873742         I 1 C 0
s dasNov3.JH561790             97545 38 -    302817 TTGTTGC-GTGAC-ATTTAAACGTACC-GGTGTGATTTGCC
i dasNov3.JH561790         C 0 I 142
e canFam3.chr35             25948703 205 +  26524999 I
e aotNan1.NW_018494050v1      214883 195 -    285216 I
e cebCap1.NW_016108108v1      281028 178 -    373274 I

a score=348985.000000
s hg38.chr6_GL000254v2_alt    214616 50 +   4827813 GTTTAACGGCTGCTTTTCACTTGTAAAATATGAACGCCCCAA-GGGCTGAG
s panTro5.chr6              29202084 50 + 175400573 GTCTAACGGCTGCTTTTCACTTGTAAAATATGAATGCCCCAA-GGGCTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29436091 50 + 173848474 GTCTAACGGCTGCTTTTCACTTGTAAAATATGAATGCCCCAA-GGGCTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5236815 49 +   6154872 GTTTAACGGCTGCTTTTCACTTGAAAAATATGAACA-CCCAA-GGGCTGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74239845 50 + 122973662 ctttaatggctgcctttcccttttaaagtatgaaccccacaa-gggctgag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29417082 50 + 172585720 CTTTAATTGCTGCCTTTCCCTTTTAAAGTATGAACCCCCCAA-GGGCTGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29078301 50 - 170955103 CTTTAATTGCTGCCTTTCCCTTTTAAAGTATGAACCCCCCAA-GGGCTGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2067846 50 -   2996164 CTTTAATTGCTGCCTTTCCCTTTTAAAGTATGAACCCCCCAA-GGGCTGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1930235 50 -   2157725 CTTTAATTGCTGCTTTTCCCTTTTAAAGTATGAACCCCCCAA-GGGCTGAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28373700 50 -  71996105 CTTTAATTGCTGTATTTCCCTTTTAAAGTATGAACCCCCCAA-GGGCTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2063769 50 +   2316924 CTTTAATTGCTGCTTTTCCCTTTTAAAGTATGAACCCCCCAA-GGGCTGAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1933826 50 -   3067355 CTTTAATTGCTGCCTTTCTCTTTTAAAGTATGAACCCCCCAA-GGGATGAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171459989 51 - 171630274 ctttcatggctgcttctcccttttaaagtgtgaactcccggaggggctgag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            285289 50 -    375362 ctttcatggctgcttttcccttttaaagtgtgaactccccga-gggctgag
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1589378 50 -   2232465 GTTTCCTGGCTACTTCTCTAATTAAAAGTATAAACTCCCAAA-GAGCAGAG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             97583 142 -    302817 I
e canFam3.chr35             25948703 205 +  26524999 I
e aotNan1.NW_018494050v1      214883 195 -    285216 I
e cebCap1.NW_016108108v1      281028 178 -    373274 I

a score=18612.000000
s hg38.chr6_GL000254v2_alt    214666 3 +   4827813 GTA
s panTro5.chr6              29202134 3 + 175400573 GTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29436141 3 + 173848474 GTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5236864 3 +   6154872 GTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29417132 3 + 172585720 GTA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2067896 3 -   2996164 GTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1930285 3 -   2157725 GTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28373750 3 -  71996105 GTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2063819 3 +   2316924 GTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1933876 3 -   3067355 GTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171460040 3 - 171630274 gta
i calJac3.chr4             C 0 I 84
s saiBol1.JH378348            285339 3 -    375362 gta
i saiBol1.JH378348         C 0 C 0
e dasNov3.JH561790             97583 142 -    302817 I
e canFam3.chr35             25948703 205 +  26524999 I
e otoGar3.GL873742           1589428 0 -   2232465 C
e aotNan1.NW_018494050v1      214883 195 -    285216 I
e cebCap1.NW_016108108v1      281028 178 -    373274 I
e macFas5.chr4              29078351 0 - 170955103 C
e nomLeu3.chr1a             74239895 0 + 122973662 C

a score=5500.000000
s hg38.chr6_GL000254v2_alt    214669 1 +   4827813 G
s panTro5.chr6              29202137 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29436144 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5236867 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29417135 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2067899 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1930288 1 -   2157725 G
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28373753 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2063822 1 +   2316924 G
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1933879 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            285342 1 -    375362 g
i saiBol1.JH378348         C 0 C 0
e dasNov3.JH561790             97583 142 -    302817 I
e canFam3.chr35             25948703 205 +  26524999 I
e otoGar3.GL873742           1589428 0 -   2232465 C
e aotNan1.NW_018494050v1      214883 195 -    285216 I
e cebCap1.NW_016108108v1      281028 178 -    373274 I
e calJac3.chr4             171460043 84 - 171630274 I
e macFas5.chr4              29078351 0 - 170955103 C
e nomLeu3.chr1a             74239895 0 + 122973662 C

a score=910.000000
s hg38.chr6_GL000254v2_alt    214670 1 +   4827813 t
s panTro5.chr6              29202138 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29436145 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5236868 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s saiBol1.JH378348            285343 1 -    375362 t
i saiBol1.JH378348         C 0 I 75
e dasNov3.JH561790             97583 142 -    302817 I
e canFam3.chr35             25948703 205 +  26524999 I
e otoGar3.GL873742           1589428 0 -   2232465 C
e aotNan1.NW_018494050v1      214883 195 -    285216 I
e cebCap1.NW_016108108v1      281028 178 -    373274 I
e calJac3.chr4             171460043 84 - 171630274 I
e colAng1.NW_012115566v1     1933880 0 -   3067355 C
e manLeu1.NW_012104165v1     2063823 0 +   2316924 C
e chlSab2.chr17             28373754 0 -  71996105 C
e cerAty1.NW_012001495v1     1930289 0 -   2157725 C
e macNem1.NW_012011356v1     2067900 0 -   2996164 C
e macFas5.chr4              29078351 0 - 170955103 C
e rheMac8.chr4              29417136 0 + 172585720 C
e nomLeu3.chr1a             74239895 0 + 122973662 C

a score=768828.000000
s hg38.chr6_GL000254v2_alt    214671 1430 +   4827813 gtgtccggaattggtgggttcttgatctcactgacttcaagaatgaagccacgggccctcgcggtgagtgttacagctcttaacgtgacgtgtctggagtttgttccttctgatgttcccatgtgttaggagtattcttctttctggtgggttcgtggtctcgctaactcaggagtgaaactgcagaccttcggaaagagtattacagctcttaagacagcacgtctggaattgttcgctcttcctgctgggctt-gcgctttcgctgatttcagg--aaaaaagctgcagaccttcacggtgagtcttacagctcataaaagcaat-gtggacccaaacagtaaccagtcgcaaaatttattgcaaagagcaaaaaaaaaaacaaca---------ctccacaatatggaagaagagccgagcgggttgtggatgctggctccggcagcctgcttttattctcttagctggccccacccacatcctgctgattggtagagccgagtggcctgttttgacagggtgctgattggtgcatttacaatccctgagctagatacaaaggttctccacgtccccaccagattagttagatacagagttttgacacacaggttctccacggccccaccagagccgctagatacagtgtcgattggtgcactcacaaaccctgagctagacacagggtgctgattggtgtgtttacaaaccttgggctagatacagagtgccgatatgtgtatttacaatccctgagctagacataaagattctccacgtccccaccagactcaggatcccagctggcttcacccagtggatcccgcaccggggttgcaggtggagttgcctgccaaccccacgccatgcgctcgcactcctcatcccttgggtggtcgatgggactgggtgccgtggagcagggggcggcgctcgtcggggaggctcgggctgcacaggaacccacggaggcgggggaaggctcaggcatggcaggctgcagtcccgaagcctgccccgcgggaaggcaactaaggcccggcgagaaatcgagcgcagcgccggtgggctggcacctctgggggatccagtacaccctctgcagtcgctggcccgggtgctaagtcccttattgcccggggccggcagggcctgccggctgctccgagtgcgaggcccgccaagcccacgcccacccggaactccagctggcccgcaagcgccgcatgcagccccggttcccgctcgcgcctctctctccacacctccctgcaagctgagggagtgggctccggccttggccagcccagaaaggggctcccacagtgcagtggtgggctgaagggctcctcaagtgccgccaaagtaggagcccaggcagaggaggcgcccagagcaagcgagggctgtgaggactgccagcacgctgtcacctctca
s panTro5.chr6              29202139 1428 + 175400573 gtgtccggtattggtgggttcttggtctcactgacttcaagaatgaagccacggaccctcgcgatgagcgtcacagctcttaacgtgacgtgtctggagtttgttcattctgatgttcccatgtgttaggagt-ttcttctttctggagggttcgtggtctcgctgactcaggagtgaaactggagaccttcgcagtgagtactacagctcttaagacggcacgtctggaattgttcgctcttcctgctgggctt-acggtttcgctggcttcaggaaaaaaaagctgcagaccttcattgtgagtcttacaactcataaaagcaat-gtggacccaaacagtaaccactagcaaaatttattgcaaaaagcaaaaaaaata--aaca---------ctccacaacatggaagaagagccgtgcgggttgtggatgctggctccggcagcctgcttttattctcttagctggccccacccacatcctgctgattggtagagccgagtggcctgttttgacagggcgctgattggtgcgtttacaatccctgagctagatacaaaggttctccacgtccccaccagattagttagatacagagtttcgacacac-ggttctccacggccccaccagagcagctagatacagtgtcgattggtgcactcacaaaccctgagctagacacagggtgctgattggtgtgtttacaaaccttgggctagatacagagtgctgatatgtgtatttacaatccctgagctagacataaagattctccacgtccccaccagactcaggatcccagctggcttcacccagtggatcccgcaccggggttgcaggtggagctgcctgccaaccccacgccatgcgctcgcactcctcatcccttgggtggtcgatgggactgggtgccgtggagcagggggcggcgctcgtcggggaggctcgggctgcacaggaacccacggaggcaggggaaggctcaggcatggcaggctgcagtcccgaagcctgccccgcgggaaggcaactaaggcccggcgagaaatcgagcgcagcgccggtgggctggcaccgctgggggatccagtacaccctccgcagccgctggcccaggtgctaagtcccttattgcccggggccggcagggcctgccggctgctccgagtgcgaggcccgccaagcccacgcccacccggaactccagctggcccacaagcgccgcatgcagccccggttcccgctcgcgcctctctctccacacctccctgcaagctgagggagtgggctccggccttggccagcccagaaaggggctcccacagtgcagtggtgggctcaagggctcctcaagtgccgccaaagtaggagcccaggcagaggaggcgcccagagcaagcgagggctgtgaggactgccagcacgctgtcacctctca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29436146 1429 + 173848474 gtgtccggtattggtgggttcttggtctcactgacttcaagaatgaagccacggaccctcgcgatgagcgtcacagctcttaacgtgacgtgtctggagtttgttccttctgatcttcccatgtgttaggagt-ttcttctttctggagggttcgtggtctcgctgactcaggagtgaaactggagaccttcgcagtgattaccacagctcttaagacagcacgtctggaattgttcgctcttcctgctgggctt-acggtttcgctggcttcagg-aaaaaaagctgcagaccttcatggtgagtcttacaactcataaaagcaatagtggacccaaacagtaaccactagcaaaatttattgcaaaaagcaaaaaaaata--aaca---------ccccacaatatggaagaaaagccgtgcgggttgtggatgctggctccggcagcctgcttttattctcttagctggccccacccacatcctgctgattggtagagccgagtggcctgttttgacagggcgctgattggtgcgtttacaatccctgagctagatacaaaggttctccacgtccccaccagattagttagatacagagtttcgacacacaggttctccacggccccaccagagcagctagatacagtgtcgattggtgcactcacaaaccctgagctagacacagggtgctgattggtgtgtttacaaaccttgggctagatacagagtgctgatatgtgtatttacaatccctgagctagacataaagattctccacgtccccaccagactcaggatcccagctggcttcacccagtggatcccgcacccgggttgcaggtggagctgcctgccaaccccacgccatgcgctcgcactcctcatcccttgggtggtcgatgggactgggtgccgtggagcagggggcggcgctcgtcggggaggctcgggctgcacaggaacccacggaggcaggggaaggctcaggcatggcaggctgcagtcccgaagcctgccccgcgggaaggcaactaaggcccggcgagaaatcgagcgcagcgccggtgggctggcaccgctgggggatccagtacaccctccgcagccgttggcccaggtgctaagtcccttattgcccggggccggcagggcctgccggctgctccgagtgcgaggcccgccaagcccacgcccacccggaactccagctggcccacaagcgccgcatgcagccccggttcccgctcgcgcctctctctccacacctccctgcaagctgagggagtgggctccggccttggccagcccagaaaggggctcccacagtgcagtggtgggctgaagggctcctcaagtgccgccaaagtaggagcccaggcagaggaggcgcccagagcaagcgagggctgtgaggactgccagcacgctgtcacctctca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5236869 1437 +   6154872 gtgtccggaattggtgggtccttggtctcactaacttcaagaatgaagccacggaccctcgcggtgagtgttacagctcttaacgtgacatgtctggaatttgttccttctgatgttccgatgtgttaggagt-ttcttctttctggtgggttcgtggtctcgctggctcaggagtgaagctgcagaccttcgcggtgagtactacagcttttaagacagcacgtctggagttgttcgctttttctgctgggcttggtggtctcactggcttcaag--aaaaaagctgcagatcttcacggtgagtcttacagctcataaaagcaat-gtggacccaaacagtaaccagtagcaagatttattgcaaagagcaaaaaaaaaa--aaaaaaaaaaagtccccacaacgtggaaaaagagccgagcagattgcggatgctggctcgggcagcctgcttttattctcttatctgaccccacccacatcctgctgattggtagagccgagtggcctgttttgacagggcgctgattggtgcatttacaatccctgagctagatacaaaggttctccacctccccaccagattagttagatacagagtttcgacacgcaggttctccacggccccacctgagcagctagatacagtgtcgattggtgcactcacaaaccctgaggtagacacagggtgctgattggtgtgtttacaaaccttgggctagatacagagtgtcgatatgtgtatttacaatccctgagctagacataaagattctccacgtccccaccagactcagaagcccagctggcttcacccagtggatcccgcaccggggttgcaggtggagctgcctgccagtcccacgccatgcgctcgcactcctcatcccttgggaggtcgatgggactgggtgccgtggagcagggggcggcgctcgtcggggaggctcgggctgcacaggaacccacggaggcgggggaaggctcaggcatggcaggctgcagtcccgaagcctgccccgcgggaaggcaactaaggcccggcgagaaatcgagcacagcgccggtgggctggcaccgctgggggatccagtacaccctccgcagccgctggcccgggtgctaagtcccttattgcccggggccggcagggcctgccggctgctccgagtgcgaggcccgccaagcccacgcccacccggaactccagctggcccgcaagcgccgcatgcagccccggttcccgctcgcgcctctctctccccacctacctgcaagctgagggagtgggctccggccttggccagcccagaaaggggctcccacagtgcagtggtgggctgaagggctcctcaagtgccgccaaagtaggagcccaggcagaggaggcgcccagagcaagcgagggctgtgaggactgccagcacgctgtcacctctca
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH561790             97583  142 -    302817 I
e canFam3.chr35             25948703  205 +  26524999 I
e saiBol1.JH378348            285344   75 -    375362 I
e otoGar3.GL873742           1589428    0 -   2232465 C
e aotNan1.NW_018494050v1      214883  195 -    285216 I
e cebCap1.NW_016108108v1      281028  178 -    373274 I
e calJac3.chr4             171460043   84 - 171630274 I
e colAng1.NW_012115566v1     1933880    0 -   3067355 C
e manLeu1.NW_012104165v1     2063823    0 +   2316924 C
e chlSab2.chr17             28373754    0 -  71996105 C
e cerAty1.NW_012001495v1     1930289    0 -   2157725 C
e macNem1.NW_012011356v1     2067900    0 -   2996164 C
e macFas5.chr4              29078351    0 - 170955103 C
e rheMac8.chr4              29417136    0 + 172585720 C
e nomLeu3.chr1a             74239895    0 + 122973662 C

a score=6504.000000
s hg38.chr6_GL000254v2_alt    216101 4 +   4827813 GTAG
s panTro5.chr6              29203567 4 + 175400573 GTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29437575 4 + 173848474 GTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5238306 4 +   6154872 GTAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74239895 4 + 122973662 gtag
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29078351 4 - 170955103 GTAG
i macFas5.chr4             C 0 C 0
s otoGar3.GL873742           1589428 4 -   2232465 GTGA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             97583 142 -    302817 I
e canFam3.chr35             25948703 205 +  26524999 I
e saiBol1.JH378348            285344 75 -    375362 I
e aotNan1.NW_018494050v1      214883 195 -    285216 I
e cebCap1.NW_016108108v1      281028 178 -    373274 I
e calJac3.chr4             171460043 84 - 171630274 I
e colAng1.NW_012115566v1     1933880 0 -   3067355 C
e manLeu1.NW_012104165v1     2063823 0 +   2316924 C
e chlSab2.chr17             28373754 0 -  71996105 C
e cerAty1.NW_012001495v1     1930289 0 -   2157725 C
e macNem1.NW_012011356v1     2067900 0 -   2996164 C
e rheMac8.chr4              29417136 0 + 172585720 C

a score=467078.000000
s hg38.chr6_GL000254v2_alt    216105  80 +   4827813 TACTTCTCCACTGCAGGAAACCCGGGGCAA-AGCTGAGAGCCTTGCTCAAAATAAGTTCTCAAAACCTA-----------------------------------tttttttttttt
s panTro5.chr6              29203571  87 + 175400573 TACTTCTCCACTGCAGTAAACCCGGGGCAA-AGCTGAGAGCCTTGCTCAAAATAAGTTCTCAAAACCTAtttt----------------------------ttttttttttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29437579  82 + 173848474 TACTTCTCCACTGCAGTAAACCCAGGGCAA-AGCTGAGAGCCTTGCTCAAAATAAGTTCTCAAAACCTT---------------------------------Attttttttttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5238310  83 +   6154872 TACTTCTCCACTGCAGTAAACCCGGGGCAA-AGCTGAGAGCCTTGCTCAAAATAAGTTCTCAAAACCTA--------------------------------ttttttttttttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74239899  79 + 122973662 tacctctccactgcagtaaacccagggcaa-agctgagagccttgctcaaaataagttctcaaAACCTA------------------------------------ttttttttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29417136 110 + 172585720 TACCTCTGCACTGCAGTAAACCCAGGGCAACAGCTGAGCGCCTTGCTCGAAATAAGTTCTCAAAACCTATTTTTGTGCGCTCTTTGTGCCAGGTAG------tttttttttttttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29078355 113 - 170955103 TACCTCTGCACTGCAGTAAACCCAGGGCAACAGCTGAGCGCCTTGCTCGAAATAAGTTCTCAAAACCTATTTTTGTGCGCTCTTTGTGCCAGGTAG---ttttttttttttttttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2067900 111 -   2996164 TACCTCTGCACTGCAGTAAACCCAGGGCAACAGCTGAGCGCCTTGCTCGAAATAAGTTCTCAAAACCTATTTTTGTGCGCTCTTTGTGCCAGGTAG-----ttttttttttttttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1930289 116 -   2157725 TACCTCTGCACTGCAGTAAACCCAGGGCAACAGCTGAGCGCCTTGCTCAAAATAAGTTCTCAAAACCTATTTTTGTGCGCTCTTTGTGCCAGGTAGTGtttttttttttttttttt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28373754 107 -  71996105 TACCTCTGCACTGCAGTAAACCCAGGGCAACAGCTGAGCGCCTTGCTCAAAATAAGTTCTCAAAACCTATTTTTGTGCGCTTTTTGTGCCAGGTAG---------ttttttttttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2063823 116 +   2316924 TACCTCTGCACTGCAGTAAACCCAGGGCAACAGCTGAGCGCCTTGCTCAAAATAAGTTCTCAAAACCTATTTTTGTGCGCTCTTTGTGCCAGGTAGTGtttttttttttttttttt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1933880 109 -   3067355 TACCTCTGCACTGCAGTAACCCCAGGGCAACAGCTGAGCGCCCTGCTCAAAATAAGTTCTCAAAACCTATTTTTGTGCGCTCTTTGTGCCAGGCAG-------TTAtttttttttt
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1589432  79 -   2232465 TACCTCTCCTCTGCTTTAAACCCAGGACA--AGCAAAGCGCGTTGTTCAAAACAAGTTCTTAAAATCTACTTTCGTTTGCT-----------------------------------
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             97583 142 -    302817 I
e canFam3.chr35             25948703 205 +  26524999 I
e saiBol1.JH378348            285344  75 -    375362 I
e aotNan1.NW_018494050v1      214883 195 -    285216 I
e cebCap1.NW_016108108v1      281028 178 -    373274 I
e calJac3.chr4             171460043  84 - 171630274 I

a score=1516285.000000
s hg38.chr6_GL000254v2_alt    216185 270 +   4827813 ctggagtctcactctgtcaccaggttgaagtgc-agaggcaagatctcggctccctgcaaccttcgcctcccgggttgaagcgattcccttgcctcagcctcccgagtagctgggactacaggcgtgcgccaccacgcccggctaatttttttgtattttagtagagacgaggtttcaccatgttggccaggatggtctagatttcctgaccttgtgatcgcccg-cctcggcctcccaaagtgctgagattacaggcgtgagccaccgcgc
s panTro5.chr6              29203658 270 + 175400573 ctggagtctcactctgtcaccaggttgaagtgc-agaggcaagatctcggctccctgcaaccttcgcctcccgggttgaagcgattcccttgcctcagcctcccgagtagctgggactacaggcgtgcgccaccacgcccggctaatttttttgtattttagtagagacgaggtttcaccatgttggccaggatggtctcgatttcctgaccttgtgatcgcccg-cctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29437661 270 + 173848474 ctggagtctcactctgtcaccaggttgaagtgc-agaggcaagatctcggctccctgcaaccttcgcctcccgggttgaagcgattcccttgcctcagcctcccgagtagctgggactacaggcgtgcgccaccacgcccggctaatttttttgtattttagtagagacgaggtttcaccatgttggccaggatggtctcgatttcctgaccttgtgatcgcccg-cctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5238393 270 +   6154872 ctggagtctcactctgtcaccaggttgaagtgc-agaggcaagatctcggctccctgcaaccttcgcctcccgggttgaagcgattcccttgcctcagcctcccgagtagctgggactacaggcgtgcgccaccacgcccggctaatttttttgtattttagtagagacgaggtttcactactcgagtcaggatggtcttgatctcctgaacttgtgatcgcccg-cctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74239978 269 + 122973662 ctgttgtctcactgtgtcaccaggtagaagtgc-agaggtgcaatctcggctccctacaaccttcgcctcccaagttgaagcgattcccttgccacagcctcccgagtagctgggactacaggcgtgcgccaccacgcccggctaa-ttttttgtattttagtagagacgaggtttcaccatgttggtcaggatggtctcgatctcctgaccttgtgatcgcccg-cctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29417246 270 + 172585720 ccggagtctcactatgtcaccaggttgaagtgcaagtggcgtgatttcggttccttgcaaccttcgcctcccgggttgaagcgattcccttgcctcagcctcccgagtagctgggactacaggcgtgcgccaccacgcccggctaa-ttttttgtgttttagtagagacgaggtttcaccatgttggccaggattgtctcgatctcctgaccttgtgatcgcacg-ccccggcctcccaaagagttgggattacaggcgtgagccacggcgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29078468 270 - 170955103 ccggagtctcactatgtcaccaggttgaagtgcaagtggcgtgatttcggttccttgcaaccttcgcctcccgggttgaagcgattcccttgcctcagcctcccgagtagctgggactacaggcgtgcgccaccacgcccggctaa-ttttttgtgttttagtagagacgaggtttcaccatgttggccaggattgtctcgatctgctgaccttgtgatcgcacg-ccccggcctcccaaagagttgggattacaggcgtgagccacggcgc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2068011 270 -   2996164 ccggagtctcactatgtcaccaggttgaagtgcaagtggcgtgatttcggttccttgcaaccttcgcctcccgggttgaagcgattcccttgcctcagcctcccgagtagctgggactacaggcgtgcgccaccacgcccggctaa-ttttttgtgttttagtagagacgaggtttcaccatgttggccaggattgtctcgatctcctgaccttgtgatcgcacg-ccccggcctcccaaagagttgggattacaggcgtgagccacggcgc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1930405 270 -   2157725 ccagagtcttactgtgtcaccaggttgaagtgcaagtggcgtgatttcggttccttgcaaccttcacctcccgggttgaagcgattcccttgcctcagcctcccgagtagctgggactacaggcgtgcgccaccacgcccggctaa-ttttttgtattttagtagagacgaggtttcaccatgttggccaggatggtctcgatctgctgaccttgtgatcgcacg-ccccggcctcccaaagagctgggtttacaggcgtgagccacggcgc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28373861 270 -  71996105 ccggagtcttactgtgtcaccaggttgaagtgcaagtggcgtgatttcggttccttgcaaccttcgcctcccgggttgaagcgattcccttgcctcagcctcccgagtagctgggactacaggcgtgcgccaccacgcccggctaa-ttttttgtattttagtagagacgaggtttcaccatgttggccaggatggtctcgatctcctgaccttgtgatcgcacg-ccccggcctcccaaagagctgggattacaggcgtaagccacggcgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2063939 271 +   2316924 ccggagtcttactgtgtcaccaggttgaagtgcaagtggcgtgatttcggttccttgcaaccttcacctcccgggttgaagcgattcccttgcctcagcctcccgagtagctgggactacaggcgtgcgccaccacgcccggctaa-ttttttgtattttagtagagacgaggtttcaccatgttggccaggatggtctcgatcttctgaccttgtgatcgcacgcccccggcctccgaaagagctgggattacaggcgtgagccacggcgc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1933989 270 -   3067355 ccgcactctcgctgtgtcaccaggttgaagtgcaagtggcgtgatttcggttccctgcaacctttgcctcccggattgaaccgattcccttgcctcagcctcccgagtagttgggactacaggcgtgcgccaccacgcccggctaa-ttttttgtattttaatagagacgaggtttcaccatgttggccaggatggtcttgatctcctgaccttgtgatcgcacg-ccccggcctcccaaagagttgggattacaggcgtgagccacggcgc
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790             97583 142 -    302817 I
e canFam3.chr35             25948703 205 +  26524999 I
e saiBol1.JH378348            285344  75 -    375362 I
e otoGar3.GL873742           1589511   0 -   2232465 C
e aotNan1.NW_018494050v1      214883 195 -    285216 I
e cebCap1.NW_016108108v1      281028 178 -    373274 I
e calJac3.chr4             171460043  84 - 171630274 I

a score=18264.000000
s hg38.chr6_GL000254v2_alt    216455 3 +   4827813 ccg
s panTro5.chr6              29203928 3 + 175400573 ccg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29437931 3 + 173848474 ccg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5238663 3 +   6154872 cAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74240247 3 + 122973662 ccg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29417516 3 + 172585720 ccg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29078738 3 - 170955103 ccg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2068281 3 -   2996164 ccg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1930675 3 -   2157725 ccg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28374131 3 -  71996105 ccg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2064210 3 +   2316924 ccg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1934259 3 -   3067355 ccg
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1589511 3 -   2232465 CCT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             97583 142 -    302817 I
e canFam3.chr35             25948703 205 +  26524999 I
e saiBol1.JH378348            285344 75 -    375362 I
e aotNan1.NW_018494050v1      214883 195 -    285216 I
e cebCap1.NW_016108108v1      281028 178 -    373274 I
e calJac3.chr4             171460043 84 - 171630274 I

a score=1382785.000000
s hg38.chr6_GL000254v2_alt    216458 130 +   4827813 TGTGCCAGGTGTTCTTAAGGTCGCAGGGAAGACTGGAGCATAACCTTTGAAGACTAAAGACAAGACAAACCCGGCGATTAC------GTCTGTAGTTATACATTG-CTTTTACAAGTAATTGTTTGGAGTACATTAC
s panTro5.chr6              29203931 130 + 175400573 TGTGCCAGGTGTTCTTAAGGTCGCAGGGAAGACTGGATCATAACCTTTGAAGACTAAAGACAAGACAAACCCGGCGATTAC------GTCTGTAGTTATACATTG-CTTTTACAAGTAATTGTTTGGAGTACATTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29437934 130 + 173848474 TGTGCCAGGTGTTCTTAAGGTCGCAGGGAAGACTGGATCATAACCTTTGAAGACTAAAGACAAGACAAACCTGGCGATTAC------GTCTGTAGTTATACATTG-CTTTTACAAGTAATTGTTTGGAGTACATTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5238666 130 +   6154872 TGTGCCAGGTGTTCTTAAGGTCGCAGGGAAGACTGGAGCATAACCTTTGAAGACTAAAGACAAGACAAACCCGGCGATTAG------GTCTGTAGTTATACATTG-CTTTTACAAGTAATTGTTTGGAGTACATTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74240250 130 + 122973662 TGTGCCAGGTATTCTTAAGGTCGCAGGGAAGACTGGAGCATAACCTTTGAAGACTAAAGACAAGACAAAACCGGCGGTTAC------GTCTGTAGTTATGCATTA-CTTTTACAAGTAATTGTTTGGATTACATTAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29417519 129 + 172585720 TGTGACAGGTATTCTTAAGGTCGCAGGCCAGACTGGAGAATAACCTTTGAAGACTAAAGACCAGACAAACCCGGCGATTAC-------TCTGTAGTTATACATTA-CTTTTACAAGTAACTGTTTGGATTACGTCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29078741 130 - 170955103 TGTGACAGGTATTCTTAAGGTCGCAGGCAAGACTGGAGCATAACCTTTGAAGACTAAAGACCAGACAAACCCGGCGATTAC------GTCTGTAGTTATACATTA-CTTTTACAAGTAACTGTTTGGATTACGTTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2068284 130 -   2996164 TGTGACAGGTATTCTTAAGGTCGCAGGCAAGACTGGAGCATAACCTTTGAAGACTAAAGACCAGACAAACCCGGCGATTAC------GTCTGTAGTTATACATTA-CTTTTACAAGTAACTGTTTGGATTACGTTAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1930678 130 -   2157725 TGTGACAGGTATTCTTAAGGTCACAGGCGAGACTGGAGCATAACCTTTGAAGACTAAAGACCAGACAAACCCGGCGATTAC------GTCTATAGTTATACATTA-CTTTTACAAGTAATTGTTTGGATTACATTAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28374134 126 -  71996105 TGTGACAGGTATTCTTAAGGTCACAGGCGAGACTGGAGCATAACCTTTGAAGACTAAAGACCAG----ACCCGGCGATTAC------GTCTGTAGTTATACATTA-CTTTTACAAGTAATTGTTTGGATTACATTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2064213 130 +   2316924 TGTGACAGGTATTCTTAAGGTCACAGGCGAGACTGGAGCATAACCTTTGAAGACTAAAGACCAGACAAACCCGGCGATTAC------GTCTATAGTTATACATTA-CTTTTACAAGTAATTGTTTGAATTACATTAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1934262 130 -   3067355 TGTGACAGGTATTCTTAAGGTCACAGGCAAGACTGGAGCATGATCTTTGAAGACTAAAGACCAGACAAACCCGGCGATTAC------GTCTGTAGTTATACATTA-CTTTTACAAGTAATTGTTTGGATTACATTAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171460127 130 - 171630274 TGTGCCAGATAGTCTCAAGGTCGCAGGGGAGACGGGAGCATGAGGTTTGAAGACTAAAGACAAGACAAACCAGGCAATTAT------GTCTGTGCTGACGTATTA-CTTTTACAAGTAACTGTTTGGATTACATTAC
i calJac3.chr4             I 84 C 0
s saiBol1.JH378348            285419 130 -    375362 TGTGCCAGATATTCTCAAGTTCGCAGGGAAGACAGGAGCATAACTTTTGAAGACTAAAGACAAGACAAACCAGGCAATTAT------GTCTGTAGTTACATATTA-CTTTTACAAGTAATTGTTTGGATTACATTAC
i saiBol1.JH378348         I 75 C 0
s cebCap1.NW_016108108v1      281206 130 -    373274 TGTGCCAGATATTCTCAAGGTCGCAGGGGAGATGGCAGCATAACTTTTGAAGACTAAAGACAAGACAAACCAGGCAATTAT------GTCTGTAGTTACATATTA-CTTTTACAAGAAATTGTTTGGATTACATTAT
i cebCap1.NW_016108108v1   I 178 C 0
s aotNan1.NW_018494050v1      215078 130 -    285216 TGTGTCAGATATTCTCAAGGTCGCAGGGGAGACGGGAGCATAACTTTTGAAGACTAAAGGCAAGACAAACCAGGCAATTAT------GTCTGTAGTTACGTATTA-CTTTTACAAGTAATTGTTTGGATTACATTAC
i aotNan1.NW_018494050v1   I 195 C 0
s otoGar3.GL873742           1589514 128 -   2232465 TGTGCCAGATATTCTTAAAGTTGCAGGG--GACTGGAGAATAACATTTGAAGAACAAAGACAAGGTAATCAAGTGATTTAA------GTATCTAGGTATGTACTA-TTTTTAGAAGTAATTGTTTGGATTACATTAC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             97725 134 -    302817 TGTGCCAGGGACTT---GGGGCGGGGGCGGGGAACGACCATAAACTTTGAAGATGAAGGACAAACCGAACCAGGGCACTATTAAACTAACAATAGTCAAAGGCTATCTTTTAGAAGTGATTCCTTGGGTTATTTTAC
i dasNov3.JH561790         I 142 C 0
e canFam3.chr35             25948703 205 +  26524999 I

a score=525374.000000
s hg38.chr6_GL000254v2_alt    216588  48 +   4827813 ACAAAGATGGGAGTTAATTTTTTCC-ATGAGTTGGGGACAAAAA------------------------------------------------------------TAACT
s panTro5.chr6              29204061  48 + 175400573 ACAAAGATGGGAGTTAATTTTTTCC-ATGAGTTGGGGACAAAAA------------------------------------------------------------TAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29438064  48 + 173848474 ACAAAGATGGGAGTTAATTTTTTCC-ATGAGTTGGGGACAAAAA------------------------------------------------------------TAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5238796  47 +   6154872 ACAAAGATGGGAGTTAA-TTTTTCC-ATGAGTTGGGGACAAAAA------------------------------------------------------------TAACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74240380  48 + 122973662 ACAAAGATGGGAGTTAATGTTTTCC-ATGAGTTGGGGACAAAAA------------------------------------------------------------TAACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29417648  48 + 172585720 ACAAGGATGGGAGTTAATTTTTTCC-ATGAGCTGGGGACAAAAA------------------------------------------------------------TAACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29078871  48 - 170955103 ACAAGGATGGGAGTTAATTTTTTCC-ATGAGCTGGGGACAAAAA------------------------------------------------------------TAACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2068414  48 -   2996164 ACAAGGATGGGAGTTAATTTTTTCC-ATGAGCTGGGGACAAAAA------------------------------------------------------------TAACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1930808  48 -   2157725 ACAAGGATGGGAGTTAATTTTTTCC-ATGAGCTGGGGACAAAAA------------------------------------------------------------TAACT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28374260  48 -  71996105 ACAAGGATGGGAGTTAATTTTTTCC-ATGAGCTGGGGACAAAAA------------------------------------------------------------TAACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2064343  48 +   2316924 ACAAGGATGGGAGTTAATTTTTTCC-ATGAGCTGGGGACAAAAA------------------------------------------------------------TAACT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1934392  48 -   3067355 ACAAGGATGGGAGTTCATTTTTTCC-ATGAGCTGGGGACAAAAA------------------------------------------------------------TAACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171460257  48 - 171630274 ACAAGGATGGAAGTTAATTTTTTCC-ATGAGTTGGGGGTGAAAA------------------------------------------------------------TAACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            285549  48 -    375362 ACAAGGATGGAAGTTAATTTTTTCC-ATGAGCTGGAGATGAAAA------------------------------------------------------------TAACT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      281336  48 -    373274 GCAAGGATGGAAGTTAACTTTTTCC-ATGAGCTGGGGACGAAAA------------------------------------------------------------TAACT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      215208  48 -    285216 ACAAGGACGGAAGTTAATTTTTTTC-ATGAGCTGGGGATGAAAA------------------------------------------------------------TAACT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1589642 108 -   2232465 CCAAGGATGGGAGTTAATTATTTCT-GTGAGCTGAGAGCAAATACATGTCCTATAGTCGTGAGATTATATATGTTATATATGATATGATAAGTATATATATATTTAATT
i otoGar3.GL873742         C 0 I 129
s canFam3.chr35             25948908  49 +  26524999 ACAAGGATGTAAGTTACTTTTTGCCAATGACCTGGGGGCAGAAA------------------------------------------------------------TAGTC
i canFam3.chr35            I 205 C 0
s dasNov3.JH561790             97859  35 -    302817 ACGAGGTCCGGAGTT-TCTTTTTCC-ATGAATTGTTT------------------------------------------------------------------------
i dasNov3.JH561790         C 0 C 0

a score=511979.000000
s hg38.chr6_GL000254v2_alt    216636  48 +   4827813 GTGAGCCATATTCAAAGTGG--------------------GCAAAAGCATAGA-----------------------------------TGGGAATAAAGAAAA
s panTro5.chr6              29204109  48 + 175400573 GTGAGCCATATTCAAAGTGG--------------------GCAAAAGCATAGA-----------------------------------TGGGAATAAAGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29438112  48 + 173848474 GTGAGCCATATTCAAAGTGG--------------------GCAAAAGCATAGA-----------------------------------TGGGAATAAAGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5238843  48 +   6154872 GTGAGCCATATTCAAAGTGG--------------------GCAAAAGCATAGA-----------------------------------TGGGAATAAGGAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74240428  48 + 122973662 GTGAGCCATATTCAAAGGGG--------------------GCAAAAGTATAGA-----------------------------------TGGGAATAAAGAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29417696  48 + 172585720 GTGAGCCATATTCAAAGAGG--------------------ACAAAAGTATAGA-----------------------------------TGGGAATAAAGAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29078919  48 - 170955103 GTGAGCCATATTCAAAGAGG--------------------ACAAAAGTATAGA-----------------------------------TGGGAATAAAGAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2068462  48 -   2996164 GTGAGCCATATTCAAAGAGG--------------------ACAAAAGTATAGA-----------------------------------TGGGAATAAAGAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1930856  48 -   2157725 GTGAGCCATATTCAAAGAGG--------------------ACAAAAGTATAGG-----------------------------------TGGGAATAAAGAAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28374308  48 -  71996105 GTGAGCCATATTCAAAGAGG--------------------ACAAAAGTATAGA-----------------------------------TGGGAATAAAGAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2064391  48 +   2316924 GTGAGCCATATTCAAAGAGG--------------------ACAAAAGTATAGG-----------------------------------TGGGAATAAAGAAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1934440  48 -   3067355 GTGAGCCATATTCAAAGGGG--------------------ACAAAAGTATAGC-----------------------------------TGGGAATAAAGAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171460305  48 - 171630274 GTGAGCCATATTCAAAGGGG--------------------GCAAAACTAGAAA-----------------------------------TGGAAATAAATAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            285597  47 -    375362 GTGAGCCGTATT-AAAAGGG--------------------GCAAAAGTAGAAA-----------------------------------TGGAAATAAAGAAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      281384  48 -    373274 GTGAGCCATATTCAAAGGGG--------------------GCAAAAGTAGAAA-----------------------------------TGGAAATAAAGAAAA
i cebCap1.NW_016108108v1   C 0 I 391
s aotNan1.NW_018494050v1      215256  48 -    285216 GTGAGCCATATTCAAAGGGG--------------------GCAAAAGTAGAAA-----------------------------------TGGAAATAAAGAAAA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1589879  47 -   2232465 GTGAGCTGTATTTAAATGAG--------------------GTGAAATTAGAAT-----------------------------------TGGCAATAAAAAGA-
i otoGar3.GL873742         I 129 C 0
s canFam3.chr35             25948957 103 +  26524999 TGGAGCCATATTCAAAGGGGCAAGGGAAAAATaaaacaaagcaaaaacaaaaaacaaaaaacaaaaacaaaGGGGGAAGGAATGGAGTTGGGAATAAGTAAAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             97894  45 -    302817 -GTAGTCACAGTC--ATGGG--------------------GTAAGGGTAGGTT-----------------------------------TGGGAGTAAGGAAAA
i dasNov3.JH561790         C 0 C 0

a score=124700.000000
s hg38.chr6_GL000254v2_alt    216684 18 +   4827813 GGAACATGGATAGGATTT-------------------
s panTro5.chr6              29204157 18 + 175400573 GGAACATGGATAGGATTT-------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29438160 18 + 173848474 GGAACATGGATAGGATTT-------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5238891 18 +   6154872 GAAACATGGATAGGATTT-------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74240476 18 + 122973662 GGAACATGGATAGGATTT-------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29417744 18 + 172585720 GGGTCGTGGAGAGGGTTT-------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29078967 18 - 170955103 GGGTCGTGGACAGGGTTT-------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2068510 18 -   2996164 GGGTCGTGGACAGGGTTT-------------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1930904 18 -   2157725 GGGCCGGGGACAGGATTT-------------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28374356 18 -  71996105 GGGTCGTGGACAAGATTT-------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2064439 18 +   2316924 GGGCCGAGGACAGGATTT-------------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1934488 18 -   3067355 GGGTTGTGGACAGGATTT-------------------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171460353 18 - 171630274 GAAACATGGACAGAATCT-------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            285644 18 -    375362 GAAACACGGACAGAATCT-------------------
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      215304 18 -    285216 GAAACACGGACAGAATTT-------------------
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1589926 18 -   2232465 AAAAGATTGACTGAATTA-------------------
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25949060 18 +  26524999 GGAACATGAACAGAATTT-------------------
i canFam3.chr35            C 0 I 229
s dasNov3.JH561790             97939 37 -    302817 GGATCCAGGGCAGAATTAAAAACAAGCAAAGAAAAAT
i dasNov3.JH561790         C 0 C 0
e cebCap1.NW_016108108v1      281432 391 -    373274 I

a score=92088.000000
s hg38.chr6_GL000254v2_alt    216702 15 +   4827813 AAGTTGGACGATATC
s panTro5.chr6              29204175 15 + 175400573 AAGTTGGACGATATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29438178 15 + 173848474 AAGTTGGACGATATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5238909 15 +   6154872 AAGTCGGACGGTATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74240494 15 + 122973662 AAGTTGGACAGTATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29417762 15 + 172585720 AGATTGGAAGATACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29078985 15 - 170955103 AGATTGGAAGATACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2068528 15 -   2996164 AGATTGGAAGATACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1930922 15 -   2157725 AGATTGGAAGGTATC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28374374 15 -  71996105 AGATTGGAAGGTATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2064457 15 +   2316924 AGATTGGAAGGTATC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1934506 15 -   3067355 AGATGGGAAGGTATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171460371 15 - 171630274 AGGTAGAAATGTATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            285662 15 -    375362 AAGTTGAAACATATG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      215322 15 -    285216 AAGTTGAAAGATATG
i aotNan1.NW_018494050v1   C 0 I 3
s otoGar3.GL873742           1589944 15 -   2232465 AAGAAGAACGACTTC
i otoGar3.GL873742         C 0 I 6
s canFam3.chr35             25949307 12 +  26524999 ---AAGGAAGACATT
i canFam3.chr35            I 229 C 0
s dasNov3.JH561790             97976 15 -    302817 AAGGTGAGCATTGTC
i dasNov3.JH561790         C 0 C 0
e cebCap1.NW_016108108v1      281432 391 -    373274 I

a score=1573221.000000
s hg38.chr6_GL000254v2_alt    216717 158 +   4827813 AAGTTTCTGCAC-----CTTTTTACTCA------------------CTAGAATGTGC--------A---------------GGAAGAAGG-----CTTTTGC-----AGGG-AgcccggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcgGGAGTG---GTGG--CTTTTAGTACCTGATTCTG
s panTro5.chr6              29204190 161 + 175400573 AAGTTTCTGCAC-----CTTTTTACTCA------------------CTAGAATGTGC--------A---------------GGAAGAAGGT--TTTTTTTAC-----AGGG-AgcccggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcgAGAGCG---GTGG--CTTTTAGTATCTGATTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29438193 161 + 173848474 AAGTTTCTGCAC-----CTTTTTACTCA------------------CTAGAATGTGC--------A---------------GGAAGAAGGT--TTTTTTTAC-----AGGG-AgcccggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcgAGAGCG---GTGG--CTTTTAGTATCTGATTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5238924 159 +   6154872 AAGTTTCTGCAC-----CTTTTTACTCA------------------CTAGAATGTGC--------A---------------GGAAGAAG----TTTTTTTAC-----AGGG-CgcccggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcgGGAGCG---GTGG--CTTTTAGTATCTGATTCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74240509 160 + 122973662 -AGTTTGTGCAG-----CTTTTTACTCA------------------CTAGAATGTGC--------C---------------GGAAGAAAA-----GTGTTAT-----GAAG-AgcccggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcgTGAGTAAACGTGG--CTTTTAGCACCCGATTCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29417777 174 + 172585720 GAGTTTGTGCAC-----CTTCTTACTCA------------------CTGGAATACTC--------ATGAAGAAGCACCTCTTGAAGAAG----CACCTCTTT-----AAGA-AgcccggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcgTAGTTA---CTGG--TTTTTAGCACCTGATTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29079000 159 - 170955103 GAGTTTGTGCAC-----CTTCTTACTCA------------------CTGGAATACTC--------A---------------TGAAGAAG----CACGTTTTC-----AAGA-AgcccggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcgTAACTT---GTGG--TTTTTAGCACCTGATTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2068543 159 -   2996164 GAGTTTGTGCAC-----CTTCTTACTCA------------------CTGGAATACTC--------A---------------TGAAGAAG----CCCCTCTTC-----AAGA-AgcccggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcgTAACTT---GTGG--TTTTTAGCACCTGATTCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1930937 159 -   2157725 GAGTTTGTGCAC-----CTTCTTACTCA------------------CTGGAATACGC--------A---------------TGAAGAAG----CGCCTTTGA-----AAGG-AgcccggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcgTGGCTG---GTGG--TTTTTAGCACCTGTTTCTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28374389 159 -  71996105 GAGTTTGTGCAC-----CTTCTTACTCA------------------CTGGAATATGC--------A---------------TGAAGAAC----CATCCTTAC-----AAGG-AgcccggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcgTGGCTG---GTGG--TTTTTAGCACCTGATTCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2064472 159 +   2316924 GAGTTTGTGCAC-----CTTCTTACTCA------------------GTGGCATATGC--------A---------------TGAAGAAG----CACCTTTGC-----AAGG-AgcccggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcgTGGCGG---GTGG--TTTTTAGCACCTGTTTCTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1934521 163 -   3067355 GAGTTTGTGCAC-----CTTCTTACTCA------------------CTAGAATACGC--------A---------------GGAAGAA-----CACTTTTTTTCACAAAAG-AgcccggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcgTGATGT---GTGG--CTTTTATCACCTGATTCTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171460386 157 - 171630274 AAGTTTGTGCAC-----CTTTTTACTCA------------------CTGGAATATACTGGAATATA---------------CAGGAAAG----ATTCTTTTC-----AGGG-AgcccggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcgTGTC---------------TGGCATCTGCTTCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            285677 159 -    375362 AAGTTTGTGCAC-----CTTTTTACTCA------------------CTAGAATATAC--------A---------------CGAAGGAA----CTTATTCGT-----GGGG-AgcccggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcgTGTCCT---GTGG--TGTTTGGCAGCTGCTTCTA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      281823 163 -    373274 AAGTTTGTGCAC-----CTTTTTACTTA------------------CTAGAATATAT--------A---------------GGAAGGAATCTTTTTCTCTTC-----AGGG-AgcccggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcgTGGCCT---GTGG--GCTTTGGTACCTACTTCTA
i cebCap1.NW_016108108v1   I 391 C 0
s aotNan1.NW_018494050v1      215340 159 -    285216 AAGTTTGTGCAC-----CTTTTTACTCA------------------CTAGAATATAT--------A---------------GGAAAGAA----CCTGTTTTT-----GGGG-AgcccggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcaggcgTGTTCT---GTGG--TGTTTGGCACCTGTTTGTA
i aotNan1.NW_018494050v1   I 3 C 0
s otoGar3.GL873742           1589965 148 -   2232465 TTGTTTGTGCAA-----CTTTATTCACA------------------CAAGGAATTAT--------A---------------GGAAACAT------GCTTTCT-----TAGG-Agcctggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggc----------gTGT--GTTTTGGCATCGG--TCCG
i otoGar3.GL873742         I 6 C 0
s canFam3.chr35             25949319 147 +  26524999 TGGACTCAGGACCAATACTTTTTTCTCA------------------CTAGGATTTCG--------A---------------GGA-----------------------AAGC-AGCTATGATATGGTGCtcagtagagcaacagacttttaatctgagggcctaggattcaactccctgtt---GAATTTCCT---ACGG--TTTCCACTGTCCATCTCTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             97991 178 -    302817 --CTCTCAGCA------CTATTTATACAGTTCATTCTGGTGCAGGCCCAGAATACAC-------TA---------------GGGAAAAG----CATGTTTGC-----AGAGCAgcccggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcgAGTACT---ACAACTCTTTTAGCATCTAACTGTG
i dasNov3.JH561790         C 0 I 564

a score=202720.000000
s hg38.chr6_GL000254v2_alt    216875 39 +   4827813 GTATCATGTTTGAAA-AAGC-CAAAAAGGACACTATCGTTT
s panTro5.chr6              29204351 39 + 175400573 GCATCGTGTTTGAAA-AAGC-CAAAAAGGACAGTATCGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29438354 39 + 173848474 GCATCATGTTTGAAA-AAGC-CAAAAAGGACAGTATCGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5239083 39 +   6154872 GCATCATGTTTGAAA-AAGC-CAAAAAAGACAGTATTGTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74240669 36 + 122973662 ACATCATGCTTGAAA-AAGC-CAAAAAA---AGTATCGTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29417951 39 + 172585720 ACTTCACGTTTGAAA-AAGC-CAAAAAGGAAAGTATCATTT
i rheMac8.chr4             C 0 I 4
s macFas5.chr4              29079159 39 - 170955103 ACTTCACGTTTGAAA-AAGC-CAAAAAGGAAAGTATCATTT
i macFas5.chr4             C 0 I 4
s macNem1.NW_012011356v1     2068702 39 -   2996164 ACTTCACGTTTGAAA-AAGC-CAAAAAGGAAAGTATCATTT
i macNem1.NW_012011356v1   C 0 I 4
s cerAty1.NW_012001495v1     1931096 39 -   2157725 ACTTCACGTTTGGAA-AAGC-TAAAAAGGAAAAAATCATTT
i cerAty1.NW_012001495v1   C 0 I 10
s chlSab2.chr17             28374548 39 -  71996105 ACTTCACGTTTGGAA-AAGC-TAAAAGGGAAAGAATCACTT
i chlSab2.chr17            C 0 I 4
s manLeu1.NW_012104165v1     2064631 39 +   2316924 ACTTCACGTTTGGAA-AAGC-TAAAAAGGAAAGAATCATTT
i manLeu1.NW_012104165v1   C 0 I 10
s colAng1.NW_012115566v1     1934684 40 -   3067355 ACTTCACGTTTGAAATAAGC-CAATAAGGAAAGTACCATTT
i colAng1.NW_012115566v1   C 0 I 4
s calJac3.chr4             171460543 39 - 171630274 ACTCTAAGTTTGAGA-AAGC-CGAAAGGGAAGCCCTCCTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            285836 40 -    375362 AGGCTAGGTTTGAGA-AAGCTCATAAGAGAAGCTAATGTTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      281986 39 -    373274 AGGGTATATTTGAAA-AAGC-CCCAGGAGGAGCTAACATTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      215499 28 -    285216 ACGTTATGCTTGA-------------GGGAAGCTATCGTTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1590113 29 -   2232465 ATTTCGTATTTAATT-AACA-----------GGTACCTTTT
i otoGar3.GL873742         C 0 I 2
s canFam3.chr35             25949466 26 +  26524999 GCTTCACTTTTGCA--GAGC-------------TATCCTTT
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             98169 564 -    302817 I

a score=-214.000000
s hg38.chr6_GL000254v2_alt    216914  8 +   4827813 --TATAGGGA---------
s panTro5.chr6              29204390  8 + 175400573 --TATAGAGA---------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29438393  8 + 173848474 --TATAGAGA---------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5239122  8 +   6154872 --TATAGGGA---------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74240705  8 + 122973662 --TATAGGGA---------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29417994  6 + 172585720 --TTTGGA-----------
i rheMac8.chr4             I 4 C 0
s macFas5.chr4              29079202  6 - 170955103 --TTTGGA-----------
i macFas5.chr4             I 4 C 0
s macNem1.NW_012011356v1     2068745  6 -   2996164 --TTTGGA-----------
i macNem1.NW_012011356v1   I 4 C 0
s chlSab2.chr17             28374591  6 -  71996105 --TTTGGA-----------
i chlSab2.chr17            I 4 C 0
s colAng1.NW_012115566v1     1934728  6 -   3067355 --TTTGGA-----------
i colAng1.NW_012115566v1   I 4 C 0
s calJac3.chr4             171460582  8 - 171630274 --TGAAGGGA---------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            285876  8 -    375362 --TGTAGAGA---------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      282025  8 -    373274 --TGTAGGGA---------
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      215527  8 -    285216 --TGTAGGGA---------
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1590144  6 -   2232465 --TCAGGA-----------
i otoGar3.GL873742         I 2 C 0
s canFam3.chr35             25949492 19 +  26524999 TATGCAGAAACCACGGGGA
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790             98169 564 -    302817 I
e manLeu1.NW_012104165v1     2064670 10 +   2316924 I
e cerAty1.NW_012001495v1     1931135 10 -   2157725 I

a score=1427546.000000
s hg38.chr6_GL000254v2_alt    216922 158 +   4827813 CAGATTTCATA-TACTG-----CAAAAAT-------------------------TCACCAAACCCTGTAGAACC----CCAAAT--TTTAAACCACGAATAGGCGAGTAACTCTGATGCCAAAT----AAAAGTAGTAAGGTGA----ATACATGGGCCCTCTACAGTGAGATAGCCCCAGATTTTCTGAAGAAAACTAACAT
s panTro5.chr6              29204398 158 + 175400573 CAGATTTCATA-TACTC-----TAAAAAT-------------------------TCACCAAACCCTGTAGAACC----CCGAAT--TTTAAACCACGAATAGGCGAGTAACTCTGATGCAAAAT----AAAAGTAGTAAGGTGA----ATACATGGGCCCTCTACAGTGAGATAGCCCCAGATTTTCTGAAGAAAACTAACAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29438401 158 + 173848474 CAGATTTCATA-TACTC-----TAAAAAT-------------------------TCACCAAACCCTGTAGAACC----CCGAAT--TTTAAACCACGAATAGGCGAGTAACTCTGATGCAAAAT----AAAAGTAGTAAGGTGA----ACACATGGGCCCTCTACAGTGAGATAGCCCCAGATTTTCTGAAGAAAACTAACAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5239130 158 +   6154872 CAGATTTCATA-TACTG-----CAAAAAT-------------------------TCACCAAGCCCTGTAGAACC----CCAAAT--TTTAAACCACGAATAGGCGAGTAACTCTGATGCAAAAT----AAAAGTAGTAAGGTGA----ATACATGGGCCCTCTACAGTGAGATAGCCCCAGATTTTCTGAAGAAAACTAACAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74240713 158 + 122973662 CAGATTTCATA-TACTG-----CAAAAGT-------------------------TCACAAAACCCTTTAGAGCC----CCAAAT--TTCAACCCACAAATCGGCGAGTAACTCTGATGCAAAAT----AAACGTAGTGAGGTGA----ATACATGGGCCCTCTACAGTGAGACGGCCCCAGATTATCTGAAGAAAACTAACAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29418000 158 + 172585720 CAGATTACATA-TACTG-----CAAAATT-------------------------TCACAAAACCCGTTAGAGCC----CCAAAT--TTCAACCCACAGATAGGTAAGTAACTCTGATGCAAAAT----AAAAGTAGTGAGGTGA----ATACATGGGACCTCTACAGTGAGATAGCCCCAGATTTTCGGAAGAAAACTAGCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29079208 158 - 170955103 CAGATTACATA-TACTG-----CAAAATT-------------------------TCACAAAACCCGTTAGAGCC----CCAAAT--TTCAACCCACAGATAGGTAAGTAACTCTGATGCAAAAT----AAAAGTAGTGAGGTGA----ATACATGGGACCTCTACAGTGAGATAGCCCCAGATTTTCGGAAGAAAACTAGCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2068751 158 -   2996164 CAGATTACATA-TACTG-----CAAAATT-------------------------TCACAAAACCCGTTAGAGCC----CCAAAT--TTCAACCCACAGATAGGTAAGTAACTCTGATGCAAAAT----AAAAGTAGTGAGGTGA----ATACATGGGACCTCTACAGTGAGATAGCCCCAGATTTTCGGAAGAAAACTAGCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1931145 158 -   2157725 CAGATTACATA-TACTG-----CAAAATT-------------------------TCACAAAACCCGTTAGAGCC----CCGAAT--TTCAACCCACAGATAGGTAAGTAACTCTGATGCAAAAT----AAAAGTAGTGAGGTGA----ATACATGGGACCTCTACAGTGAGATAGCCCCAGATTTTCGGAAGAAAACTAGCAT
i cerAty1.NW_012001495v1   I 10 C 0
s chlSab2.chr17             28374597 158 -  71996105 CAGATTACATA-TACTG-----CAAAATT-------------------------TCACAAAACCCGTTAGAGCC----CCAAAT--TTCAACCTACAGATAGGTAAGTAACTCTGATGCAAAAT----AAAAGTAGTGAGGTGA----ATACATGGGACCTCTACAGTGAGATAGCCCCAGATTTTCGGAAGAAAACTAGCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2064680 158 +   2316924 CAGATTACATA-TACTG-----CAAAATT-------------------------TCACAAAACCCGTTAGAGCC----CCGAAT--TTCAACCCACAGATAGGTAAGTAACTCTGATGCAAAAT----AAAAGTAGTGAGGTGA----ATACGTGGGACCTCTACAGTGAGATAGCCCCAGATTTTCGGAAGAAAACTAGCAT
i manLeu1.NW_012104165v1   I 10 C 0
s colAng1.NW_012115566v1     1934734 159 -   3067355 CAGATTACATATTACTG-----CAAAATT-------------------------TCACAAAACCCGTTAAAGTC----CCAAAT--TTCAACCCACAGATAGGTAATTAACTCTGATGCAAAAT----AAAAGTAGTGAGGTGA----ATACATGGGACCTCTGCACTGAGATAGCCCCAGATTTTCTGAAGAAAACTAGCAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171460590 155 - 171630274 CAG-TTACTAA-CACCG-----TAAAAAT-------------------------TCACAAAACCCTGTAGGGCC----CAAAAT--TTCAACCCACGATTACACAAATAACTCTGATGCAAAAT----AAAAGTAGTGAGGTGA----ATACATGGGGCCTCTACGGTGAGATAGCCGCAGATCTTCTGAAGAAAACTGAC--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            285884 158 -    375362 CAGATTACTAA-CACCT-----TAAAAAT-------------------------TCACAAAACTCTTTAGGGCC----CAAAAT--CTCAACCCACGATTAGACAAATAA--CTGTTGCAAAAT----AAAAGCGGTGAGGTGAATACATACATGGGGCCTCTACACTGAGATAGCCCTAGATTTTCTGAAGAAAACTGAC--
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      282033 133 -    373274 CAGATTACTAA-CACCG-----TAAAAAT-------------------------TCACAAAAC---------------------------ACCCACGATTAGACAAATAA--CTGATGCAAAAT----AAAAGTAGTGAGGTGA----ATACGTGGGGCCTCTACAGTGAGATAGCCCCAGATCTTCTGAAGAAAACTAAC--
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      215535 156 -    285216 CAGATTACTAA-CACTG-----TAAAAAT-------------------------TCACAAAACCATTTAGGGCC----CAAAAT--TTCAACCCACGATTAGACAAATAACTCTGATGCAAAAT----AAAAGTAGTGAGGTGA----ATATATGGGGCCTCTACAGTGAGATAGCCCCAGATCTTCTGAAGAAAACTGAC--
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1590150 174 -   2232465 CAGATTATGTA-ACCTGTTACATAAAATTGTAACATTGTAGAGACAACTGAAAGTTGGAAAGCTTTACAAAACCGCGGTCAAATCCTTTAGCACACAAAT--------------------AATT----AAGCTTAGAAAAGATA----ATACCTGGGACCTCTACAATAAGACAGGCCCAAATTTTGTGAAGAAAATTAACAT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25949511 160 +  26524999 TACATGACCTA-GGTGG-----CCACATG-------------------------ATGGAAAAATCTTTAGGGTC----AAGCAT--TTCTAGCCCGCAATGAAGAAGTGACTCCCCTACAAAGTGAGGAAAAATAGTGGGG--G----ATACATGGGAGCTTTACAGTAGGATGGTCCAAATCTTTGTGAAAAGAACTAACAT
i canFam3.chr35            C 0 I 788
e dasNov3.JH561790             98169 564 -    302817 I

a score=244786.000000
s hg38.chr6_GL000254v2_alt    217080 28 +   4827813 TTAAGGACAACCTTAGAATACGAAGTAT
s panTro5.chr6              29204556 28 + 175400573 TTAAGGACAACCTTAGAATACGAAGTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29438559 28 + 173848474 TTAAGGACAACCTTAGAATACGAAGTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5239288 28 +   6154872 TTAAGGACAACCTTAGAATACGAAGTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74240871 28 + 122973662 TTAAGGATAACCTTAGAATACGAAGTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29418158 28 + 172585720 TTAAGGATAACCTTAGAATACGAAGTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29079366 28 - 170955103 TTAAGGATAACCTTAGAATACAAAGTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2068909 28 -   2996164 TTAAGGATAACCTTAGAATACGAAGTAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1931303 28 -   2157725 TTAAGGATAACCTTAGAATACGAAGTAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28374755 28 -  71996105 TTAAGGATAACCTTAGAATACGAAGTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2064838 28 +   2316924 TTAAGGATAACCTTAGAATACGAAGTAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1934893 28 -   3067355 TTAAGGATAACCTTAGAATACTAAGTAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171460745 22 - 171630274 ------AAAGCCTTAGAATACAAAGTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            286042 22 -    375362 ------AAGGCGTTAGaataaaaagtat
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      282166 22 -    373274 ------AAAGCCTTAGAATACAAAGTAT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      215691 22 -    285216 ------AAAGCCTTACAATACAAAGTAT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1590324 28 -   2232465 GTAAGGAGCACCTTATACTACATAGTCA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             98169 564 -    302817 I
e canFam3.chr35             25949671 788 +  26524999 I

a score=135082.000000
s hg38.chr6_GL000254v2_alt    217108 10 +   4827813 TTAATATTTT
s panTro5.chr6              29204584 10 + 175400573 TTAATATTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29438587 10 + 173848474 TTAATATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5239316 10 +   6154872 TTAATATTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74240899 10 + 122973662 TTAATATTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29418186 10 + 172585720 TTAATATTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29079394 10 - 170955103 TTAATATTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2068937 10 -   2996164 TTAATATTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1931331 10 -   2157725 TTAATATTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28374783 10 -  71996105 TTAATATTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2064866 10 +   2316924 TTAATATTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1934921 10 -   3067355 TTAATATTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171460767 10 - 171630274 TTAATATTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            286064 10 -    375362 ttaatatttt
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      282188 10 -    373274 TTAATATTTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      215713 10 -    285216 TTAATATTTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1590352 10 -   2232465 TTAACATTTT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25950459 10 +  26524999 TTGATATTTT
i canFam3.chr35            I 788 C 0
e dasNov3.JH561790             98169 564 -    302817 I

a score=2399369.000000
s hg38.chr6_GL000254v2_alt    217118 213 +   4827813 ATGATTCCTGTTACTCTGCTTACAGGTGC-CAAAGTAATCTTCTGTTGTTACTTGC-TTTCCAGTGCAGAGTTTATTTTACGTAGGAGGGAATATACTGATCAATTATCAA-----------GAAAGTTA----------------TAATATGTTCATATTCTGGCTTGGCATATTTCTGGCATTTAGTTACCGTGAGTCAGCCCTGCAAGTCTTAAAAACTCT---AGGTGAATTTAAAAATAG
s panTro5.chr6              29204594 210 + 175400573 ATGATTCCTGTTACTCTGCTTACAGGTGC-CAAAGTAA---TCTGTTGTTACTTGC-TTTCCAGTGCAGAGTTTATTTTACGTAGGAGGGAATATACTGATCAATTATCAA-----------GAAAGTTA----------------TAATATGTTCATATTCTGGCTTGGCATATTTCTGGCATTTAGTTACCGTGAGTCAGCCCTGCAAGTCTTAAAAACTCT---AGGTGAATTTAAAAATAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29438597 210 + 173848474 ATGATTCCTGTTACTCTGCTTACAGGTGC-CAAAGTAA---TCTGTTGTTACTTGC-TTTCCAGTGCAGAGTTTATTTTACGTAGGAGGGAATATACTGATCAATTATCAA-----------GAAAGTTA----------------TAATATGTTCATATTCTGGCTTGGCATATTTCTGGCATTTAGTTACCGTGAGTCAGCCCTGCAAGTCTTAAAAACTCT---AGGTGAATTTAAAAATAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5239326 213 +   6154872 ATGattcctgttactctgcttacaggtgc-caaagtaatcttctgttgttacttgc-tttcccgtgcagagtttattttacataggagggaatatactgatcaattatcaa-----------gaaagtta----------------taatatgttcatactctggcttggcatatttctggcatttagttaccgtgagtccgccctgcaagtcttaaaaactcc---aggtgaatttaaaaatag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74240909 212 + 122973662 ATTATTCCTGTTACTCAGCTTACAGGTGC-CACAGCAATCTTGTGTTGTTACTTGC-TTTCCAGTGCAGAGTTTATTTTACATAGGAGGGAATATACTGATCAATTAT-AA-----------GAAAGTTA----------------TAATATGTTCAAATTCTGGCTGGGCATGTTTCTGGCATTTAGTTATTGTGAGTCAGCCCTGCAAGTCTGAAAAATTCT---AGGTGAATTTAAAAATAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29418196 211 + 172585720 ATTATTCCTGTTACTCTGTTTACAGGTGC-CAGAGTAATCTTCTGTTGTTACTTGC-TTTCCAGTACAGAGTTTATTTTACATAGGAGGGAATATACTGATCAATTATCAA-----------GAAAGTTA----------------taatatgttcatattctggcttgacatgtttctggcatttagttattgtgagtcagccctgcaagtctgaaaaa--ct---aggtgaatttaaaaatag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29079404 211 - 170955103 ATTATTCCTGTTACTCTGTTTACAGGTGC-CAGAGTAATCTTCTGTTGTTACTTGC-TTTCCAGTACATAGTTTATTTTACATAGGAGGGAATATACTGATCAATTATCAA-----------GAAAGTTA----------------TAATATGTTCATATTCTGGCTTGACATGTTTCTGGCATTTAGTTATTGTGAGTCAGCCCTGCAAGTCTGAAAAA--CT---AGGTGAATTTAAAAATAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2068947 211 -   2996164 ATTATTCCTGTTACTCTGTTTACAGGTGC-CAGAGTAATCTTCTGTTGTTACTTGC-TTTCCAGTACAGAGTTTATTTTACATAGGAGGGACTATACTGATCAATTATCAA-----------GAAAGTTA----------------taatatgttcatattctggcttgacatgtttctggcatttagttattgtgagtcagccctgcaagtctgaaaaa--ct---aggtgaatttaaaaatag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1931341 211 -   2157725 ATTATTCCTGTTACTCTGTTTACAGGTGC-CAGAGTAATCTTCTGTTGTTACTTGC-TTTCCAGTACAGAGTTTATTTTACGTAGGAGGGAATATACTGATCAATTCTCAA-----------GAAAGTTA----------------TAATTTGTTCATATTCTGTCTTGACATGTTTCTGGCATTTAGTTATTGTGAGTCAGCCCTGCAAGTCTGAAAAA--CT---AGGTGAATTTAAAAATAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28374793 211 -  71996105 ATTATTCCTGTTACTCTGTTTACAGGTGC-CAGAGTAATCTTCTGTTGTTACTTGC-TTTCCAGTACAGAGTTTATTTTACATAGGAGGGAATATACTGATCAATTATCAA-----------GAAAGTTA----------------TAATATGTTCATATTCTGGCTTGACATGTTTCTGGCATTTAGTTATTGTGAGTCAGCCCTGCAAGTCTGAAAAA--CT---AGGTGAATTTAAAAATAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2064876 211 +   2316924 ATTATTCCTGTTACTCTGTTTACAGGTGC-CAGAGTAATCTTCTGTTGTTACTTGC-TTTCCAGTACAGAGTTTATTTTACGTAGGGGGGAATATACTGATCAATTATCAA-----------GAAAGTTA----------------TAATTTGTTCATATTCTGTCTTGACATGTTTCTGGCATTTAGTTATTGTGAGTCAGCCCTGCAAGTCTGAAAAA--CT---AGGTGAATTTAAAAATAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1934931 208 -   3067355 ATTATTCCTGTTACTCTGTTTACAGGTGC-CAGAGTAA---TCTGTTGTTACTTGC-TTTCCAGTACAGAGTTTATTTTACATAGGAGGGAATATACTGATCAATTATCAA-----------GAAAGTTA----------------taatatgttcatattctggcttgacatgtttctggcatttagttattgtgagtcagccccgcaagtctgaaaaa--ct---aggtgaatttaaaaatag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171460777 204 - 171630274 ATTATTTCTGTTACGCTGCTTACAGGTGC-CAGAGTAA---T---CTGTTATTTGC-TTTCCAGTGTAGAGTTTATTTTACACAGGAGGGAGTATGCTGATCAATTACCAA-----------GAAAGTTA----------------TAA-GTGTATATATTCTGGCTTGGCATGCTTGTGACATTTAGTTACTGTGAGTCAGCGCTGCAAGTCTGAAAAA--CT---AGGTGAATTTAAAAACAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            286074 207 -    375362 attatttCTGTTATTCTGCTTACAGGTGC-CAGAGTAA---TTTGTTGTTATTTGC-TTTCCAGTGTAGAGTTTATTTTACGTAGGAGGGAATATGCTGATCAATTGCCAA-----------GAAAGTTA----------------TAA-GTGTACATATTCTGGAGTGGCATGTTTGTGGCATTTAGTTACTGTAAGTCAGCACTGCAAGTCTGAAAAA--CT---AGGTGAATTTAAAAACAG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      282198 202 -    373274 ATTATTTCTGTTACTTTGCTTACAGGTGC-CAGAGTAA---TCTGTTGTTATTTGC-TTTCCAGTGTAGAGTTTATTTTACATAGGAGGGAATATGCTGATCAATTACCAA-----------GAAAGTTA----------------TAA-ATGTACATATTC-----TGGCATGTTTGTGGCATTTAGTTACTGTGAGTCAGCGCTGCAAGTCTGAAAAA--CT---AGGTGAATTTAAAAATAG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      215723 204 -    285216 ATTATT--TGTTACTCTGCTTACAGGTGC-CAGAGTAA---TATGTTGTTATTTGC-TTTCCAGTGTAGAGTTTATTTTGAATA-GAGGGAATATGCTGATCAATTACCAA-----------GGAAGTTA----------------TAA-GTGTACATATTCTGGCTTCGCATGTTTGCGGCATTTAGTTACTGTGAGTCAGCGCTGCAAGTCTGAAAAA--CT---AGGTGAATTTAAAAATAG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1590362 226 -   2232465 ATTACTCCTGTTACTCTGGTTGTGAGTGCATAGAGTAACCTTGTCTTGTTATTTGCTTTTCCACTGCAGAGTTTATTTCACATAGGTGGGAATATGCTGATGAATTACCAATCTGTTATAACATGATATA----------------TAATATGTTCATATTTTGGCTTGGTATGTCTCTGACATTTGGTTATTGTGAGTCAGTCTTGCAAGCCTGAAAATCTCT---GGGTAAACTGGAAAATAG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25950469 198 +  26524999 ATTACTTCCACTACTCTTATTACAGGTGC--AGAG---------------ATTTGA-TTTCCATGGTAGAGTTTATTTTACATAGGTGAGAATGTACTGATCAAGCATGAA-----------TATGGTTA----------------TGATATATTCAGGTTCTGGCTTGGAACGTCTCTGACATCTGGTTACTGTGTGTCAGTCCTTCAAGCCTAAAAAA--CTCTGGGGTGAATTAAAACATAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             98733 215 -    302817 ATTACTCCCGCTGTTCCGATTCCAGCTGT------------TCTGAGCTGATTTGC-TTTCCCTGCCAGAGTTGACTTCACACACGAAAGAACGTGTCGACC-ACCCCCAA-----------GACAGCCAGGCCCTCCCCGGGCCTTGGCAGGGTGGTACTCCGGCTTGGCACGTCTCCGGCATTTGGTTATTGTGAGTCAGT-CGGCAAGTCTGGAAAACTCT---GGGT-CATGAAAAAATAG
i dasNov3.JH561790         I 564 C 0

a score=4664.000000
s hg38.chr6_GL000254v2_alt    217331 1 +   4827813 T
s panTro5.chr6              29204804 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29438807 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5239539 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74241121 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171460981 1 - 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            286281 1 -    375362 T
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      282400 1 -    373274 T
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      215927 1 -    285216 T
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1590588 1 -   2232465 T
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25950667 1 +  26524999 T
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             98948 1 -    302817 C
i dasNov3.JH561790         C 0 C 0
e colAng1.NW_012115566v1     1935139 0 -   3067355 C
e manLeu1.NW_012104165v1     2065087 0 +   2316924 C
e chlSab2.chr17             28375004 0 -  71996105 C
e cerAty1.NW_012001495v1     1931552 0 -   2157725 C
e macNem1.NW_012011356v1     2069158 0 -   2996164 C
e macFas5.chr4              29079615 0 - 170955103 C
e rheMac8.chr4              29418407 0 + 172585720 C

a score=13825.000000
s hg38.chr6_GL000254v2_alt    217332 4 +   4827813 TTCC
s panTro5.chr6              29204805 4 + 175400573 TTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29438808 4 + 173848474 TTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5239540 4 +   6154872 ttcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74241122 4 + 122973662 TTCT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171460982 4 - 171630274 TTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            286282 4 -    375362 TTCT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      282401 4 -    373274 TTCT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      215928 4 -    285216 TTCT
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             98949 4 -    302817 TTCC
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25950668 0 +  26524999 C
e otoGar3.GL873742           1590589 0 -   2232465 C
e colAng1.NW_012115566v1     1935139 0 -   3067355 C
e manLeu1.NW_012104165v1     2065087 0 +   2316924 C
e chlSab2.chr17             28375004 0 -  71996105 C
e cerAty1.NW_012001495v1     1931552 0 -   2157725 C
e macNem1.NW_012011356v1     2069158 0 -   2996164 C
e macFas5.chr4              29079615 0 - 170955103 C
e rheMac8.chr4              29418407 0 + 172585720 C

a score=168290.000000
s hg38.chr6_GL000254v2_alt    217336 53 +   4827813 ggccgagcgctgtggctcacgcctgtaatcccagcactttgggaggccgaggc
s panTro5.chr6              29204809 53 + 175400573 ggccgagcgctgtggctcacgcctgtaatcccagcactttgggaggccgaggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29438812 53 + 173848474 ggccgagcgctgtggctcacgcctgtaatcccagcactttgggaggccgaggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5239544 53 +   6154872 ggccgagcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74241126 53 + 122973662 ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggc
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171460986 53 - 171630274 Ggccgagtgcagtggctcacgcctgtaatcccagcacttcgggaggccgaggc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            286286 53 -    375362 Ggccgggcgcggtggctcacgcctgtaatcccagcacttcgggaggctgaggc
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      282405 53 -    373274 Ggcctggcgcggtggctcacgcctgtaatcgcagcacttcgggaggctgaggc
i cebCap1.NW_016108108v1   C 0 I 533
s aotNan1.NW_018494050v1      215932 53 -    285216 Ggccgggcgcggtggctcacgcctgtaatcccagcacttcgggagactgaggc
i aotNan1.NW_018494050v1   C 0 I 127
e dasNov3.JH561790             98953  0 -    302817 C
e canFam3.chr35             25950668  0 +  26524999 C
e otoGar3.GL873742           1590589  0 -   2232465 C
e colAng1.NW_012115566v1     1935139  0 -   3067355 C
e manLeu1.NW_012104165v1     2065087  0 +   2316924 C
e chlSab2.chr17             28375004  0 -  71996105 C
e cerAty1.NW_012001495v1     1931552  0 -   2157725 C
e macNem1.NW_012011356v1     2069158  0 -   2996164 C
e macFas5.chr4              29079615  0 - 170955103 C
e rheMac8.chr4              29418407  0 + 172585720 C

a score=6497.000000
s hg38.chr6_GL000254v2_alt    217389 10 +   4827813 gggcggatc--------------t---
s panTro5.chr6              29204862 24 + 175400573 gggcggatctcgaggtcaggagat---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29438865 24 + 173848474 gggcggatctcgaggtcaggagat---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5239597 24 +   6154872 gggcggatcacgaggtcaggagat---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74241179 24 + 122973662 gggcggatcacgaggtcaggagat---
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171461039 10 - 171630274 -----------------aagagactcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            286339 10 -    375362 -----------------aagagaatcc
i saiBol1.JH378348         C 0 C 0
e dasNov3.JH561790             98953  0 -    302817 C
e canFam3.chr35             25950668  0 +  26524999 C
e otoGar3.GL873742           1590589  0 -   2232465 C
e aotNan1.NW_018494050v1      215985 127 -    285216 I
e cebCap1.NW_016108108v1      282458 533 -    373274 I
e colAng1.NW_012115566v1     1935139  0 -   3067355 C
e manLeu1.NW_012104165v1     2065087  0 +   2316924 C
e chlSab2.chr17             28375004  0 -  71996105 C
e cerAty1.NW_012001495v1     1931552  0 -   2157725 C
e macNem1.NW_012011356v1     2069158  0 -   2996164 C
e macFas5.chr4              29079615  0 - 170955103 C
e rheMac8.chr4              29418407  0 + 172585720 C

a score=107126.000000
s hg38.chr6_GL000254v2_alt    217399 122 +   4827813 cgagaccatcctggccaacacggtgaaaccccgtctctactaaaaatacaaaaataattagctgggcgtggtggcgggcgcatgtagtcccagctactcgggaggctgaggctggagaaggg
s panTro5.chr6              29204886 122 + 175400573 cgagaccatcctggccaacacggtgaaaccccgtctctactaaaaatacaaaaataattagcttggcgtggtggcgggcgcatgtagtcccagctactcgggaggctgaggctggagaaggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29438889 122 + 173848474 cgagaccatcctggccaacacggtgaaaccccgtctctactaaaaatacaaaaataattagcttggcgtggtggcgggcgcatgtagtcccagctactcgggaggctgaggctggagaaggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5239621 122 +   6154872 cgagaccatcctggccaacacggtgaaaccccgtctctactaaaaatacaaaaataactagctgggcgtggtggcgggcgcctgtagtcccagctactcggaaggctgaggctggagaaggg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74241203 122 + 122973662 cgagaccatcctggccaacacggtgataccccgtctctactaaaaacacacaaaaaattatctgggcgtggtggcgggcgcctgtagtcccagctactggggaggctgaggcaggagaatgg
i nomLeu3.chr1a            C 0 C 0
e dasNov3.JH561790             98953   0 -    302817 C
e canFam3.chr35             25950668   0 +  26524999 C
e saiBol1.JH378348            286349   0 -    375362 C
e otoGar3.GL873742           1590589   0 -   2232465 C
e aotNan1.NW_018494050v1      215985 127 -    285216 I
e cebCap1.NW_016108108v1      282458 533 -    373274 I
e calJac3.chr4             171461049   0 - 171630274 C
e colAng1.NW_012115566v1     1935139   0 -   3067355 C
e manLeu1.NW_012104165v1     2065087   0 +   2316924 C
e chlSab2.chr17             28375004   0 -  71996105 C
e cerAty1.NW_012001495v1     1931552   0 -   2157725 C
e macNem1.NW_012011356v1     2069158   0 -   2996164 C
e macFas5.chr4              29079615   0 - 170955103 C
e rheMac8.chr4              29418407   0 + 172585720 C

a score=144294.000000
s hg38.chr6_GL000254v2_alt    217521 113 +   4827813 cgtgaacccgggaggtagagcttgcagtgagccgagattgcgccactgcactccagcctgggcgacagagc--gactccgtcac-aaaaaataaaaataaaaatacataaaaaTAA
s panTro5.chr6              29205008 115 + 175400573 cgtgaacccgggaggtagagcttgcagtgagccgagattgcgccactgcactccagcctgggcgacagagcgagactccgtcac-aaaaaataaaaataaaaatacataaaaaTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29439011 115 + 173848474 cgtgaacccgggaggtagagcttgcagtgagccgagattgcgccactgcactccagcctgggcgacagagcgagactccgtcac-aaaaaataaaaataaaaatacataaaaaTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5239743 115 +   6154872 cgtgaacccgggaggtagaggttgcagtgagccgagattgtgccactgcactccagcctgggcgacagagcgagactccgtcac-aaaaaataaaaataaaaatacataaaaataa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74241325 112 + 122973662 cgtgaacccgggaggcgcagcttgcagcgagccgagattgcaccactgcactccagcctggacgacagagcgagactgcctcag-aaaaaaaaaaaaaaagaa---aaaaaaaTTG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171461049 108 - 171630274 cttcaacccaggaggcagaggttgcagtgagctgagatcgcgctgctccactccgaactgtgctacagaacgagactccgtctcaaaaataagtaaataaata-------aaaTA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            286349 107 -    375362 cttcaaccgaggggacggagtttgcagtgagctgagatcgcgctgttccactccatcctgggctatagagcaagactctgtctc-aaaataagtaaataaata-------aaaTA-
i saiBol1.JH378348         C 0 C 0
e dasNov3.JH561790             98953   0 -    302817 C
e canFam3.chr35             25950668   0 +  26524999 C
e otoGar3.GL873742           1590589   0 -   2232465 C
e aotNan1.NW_018494050v1      215985 127 -    285216 I
e cebCap1.NW_016108108v1      282458 533 -    373274 I
e colAng1.NW_012115566v1     1935139   0 -   3067355 C
e manLeu1.NW_012104165v1     2065087   0 +   2316924 C
e chlSab2.chr17             28375004   0 -  71996105 C
e cerAty1.NW_012001495v1     1931552   0 -   2157725 C
e macNem1.NW_012011356v1     2069158   0 -   2996164 C
e macFas5.chr4              29079615   0 - 170955103 C
e rheMac8.chr4              29418407   0 + 172585720 C

a score=102611.000000
s hg38.chr6_GL000254v2_alt    217634 15 +   4827813 TTTCTGACGgggcgc
s panTro5.chr6              29205123 15 + 175400573 TTTCTGACGgggcgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29439126 15 + 173848474 TTTCTGACGgggcgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5239858 15 +   6154872 tttctgacggggcgc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74241437 15 + 122973662 TTTCTGACGgggcgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29418407 15 + 172585720 tttctgaCGgggcgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29079615 15 - 170955103 TTTCTGACGgggcgc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2069158 15 -   2996164 tttctgaCGgggcgc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1931552 15 -   2157725 TTTCTGACGgggcgc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28375004 15 -  71996105 TTTCTGACGgggcgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2065087 15 +   2316924 TTTCTGACGgggcgc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1935139 15 -   3067355 tttctgacagggcgc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171461157 10 - 171630274 -----ggtcgggtgc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            286456 10 -    375362 -----ggccgggtgc
i saiBol1.JH378348         C 0 C 0
e dasNov3.JH561790             98953  0 -    302817 C
e canFam3.chr35             25950668  0 +  26524999 C
e otoGar3.GL873742           1590589  0 -   2232465 C
e aotNan1.NW_018494050v1      215985 127 -    285216 I
e cebCap1.NW_016108108v1      282458 533 -    373274 I

a score=2222703.000000
s hg38.chr6_GL000254v2_alt    217649 306 +   4827813 ggtggct---cacgcctgtaatcccagcactctgggagtccgaggcgggcagatcacctgcggtcaggagttcgagaccagccgggccaacatgctgaaaca---gtctctactaaaaatacaaaaattagccgagagtggtggtacgcgcctataatcccagctacttgggaggctgaggcaggagaatagcttgaaccagggaggcagaggttgcagcgagccgagatcgcacggctccactccatcctggtagacagagggagactcA--------------------------aaataaataatacaaataagtaaataaaat-aaaAATAGTGT
s panTro5.chr6              29205138 306 + 175400573 ggtggct---cacgcctgtaatcccagcactctgggagtccgaggcgggcagatcacctgcggtcaggagttcgagaccagccgggccaacatgctgaaaca---gtctctactaaaaatacaaaaattagccgagagtggtggtgcgcgcctataatcccagctacttgggaggctgaggcaggagaatagcttgaaccagggaggcagaggttgcagcgagccgagatcgcacggctccactccatcctggtagacagagggagactcA--------------------------aaataaataatacaaataagtaaataaaAT-Aaaaatagtgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29439141 306 + 173848474 ggtggct---cacgcctgtaatcccagcactctgggagtccgaggcgggcagatcacctgcggtcaggagttcgagaccagccgggccaacatgctgaaaca---gtctctactaaaaatacaaaaattagccgagagtggtggtgcgcgcctataatcccagctacttgggaggctgaggcaggagaatagcttgaaccagggaggcagaggttgcagcgagccgagatcgcacggctccactccatcctggtagacagagggagactcA--------------------------aaataaataatacaaataagtaaataaaAT-Aaaaatagtgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5239873 332 +   6154872 ggtggct---cacgcctgtaatcccagcactctgggagtccgaggcgggcagatcacctgcggtcaggagttcgagaccagccgggccaacatgctgaaaca---gtctctactaaaaatacaaaaattagctgagagtggtggtgcgcgcctataatcccagctacttgggaggctgaggcaggagaatagcttgaaccagggaggcagaggttgcagcgagccgagatcgcacggctccactccatcctggtagacggagtgagactccgtctcaaaataaataaataaataaataaataaataatacaaataagtaaataaaat-aaaaatagtgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74241452 301 + 122973662 ggtggct---catgcctgtaatcccagcactctgggagtccgaggcgggcagatcacctgcggtcaggagttcgagaccagccgggccaacatggtgaaaca---gtctctactaaaaatagaaaaattagccgacagtggtggcgggcgcctataatcccagctacttgggaggctga-gcaggagaatcgcttgaaccctggaggcagagactgcagcgaaccaagatcgtgccgctccactccatcctggtagacagagcgagactcA--------------------------aaataaataatacaaa----taaataaaat-aaaAATAGTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29418422 309 + 172585720 ggtggcttactacgcctgtaatcccagcactttgggagtcctaggcgggcagatcacctgcggtcaggagttggaggccagccggatcaacatggtgaaata---gtctctactaaaaatacaaaaattaggcgggcgtggtggcgcgcgcctgtaatcccagctactggggaggctgaggcaggagaatcgttggaatccgggaggcagaggttgcagtgagccgagatcacgccgctccactccatcctggtagacagagcgagactcA--------------------------aaataaataatacaaataaataaataaaAT-Aaaaatagtgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29079630 309 - 170955103 ggtggcttactacgcctgtaatcccagcactttgggagtcctaggcgggcagatcacctgcggtcaggagttggaggccagccggatcaacatggtgaaaca---gtctctactaaaaatacaaaaattaggcgggcgtggtggcgcgcgcctgtaatcccagctactggggaggctgaggcaggagaatcgctggaatccgggaggcagaggttgcagtgagccgagatcacgccgctccactccatcctggtagacagagcgagactcA--------------------------aaataaataatacaaataaataaataaaat-aaaaataGTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2069173 309 -   2996164 ggtggcttactacgcctgtaatcccagcactttgggagtcctaggcgggcagatcacctgcggtcaggagttggaggccagccggatcaacatggtgaaaca---gtctctactaaaaatacaaaaattaggcgggcgtggtggcgcgcgcctgtaatcccagctactggggaggctgaggcaggagaatcgctggaatccgggaggcagaggttgcagtgagccgagatcacgccgctccactccatcctggtagacagagcgagactcA--------------------------aaataaataatacgaataaataaataaaAT-Aaaaatagtgt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1931567 280 -   2157725 ggtggct---tacgcctgtaatcccagcactttgggagtcctaggcgggcagatcacctgcggtcagaagttggagaccagccggatcaacatggtgaaata---gtctctactaaaaatacaaaaat--------------------------taattccagctattggggaggctgaggcaggagaatcgctggaatccgggaggcagaggttgcagtgagccgagatcacgccgctccactccatcctggtagacggagcgagactcA--------------------------aaataaataatacaaataaataaataaaAT-Aaaaatagtgt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28375019 306 -  71996105 ggtggct---tacgcctgtaatcccagcactttgggagtcctaggcgggcagatcacctgcggtcaggagttggagaccagccggatcaacatggcgaaaca---gtctctactaaaaatacaaaaattaggcgggcgtggtggcgcgcgcctgtaatcccagctactggggaggctgaggcaggagaatcgctggaatccgggaggcagaggttgcagtgagctgagatcacgccgctccactccatcctggtagacggagcgagactcA--------------------------aaataaataatacaaataaataaataaaat-aaaaataGTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2065102 280 +   2316924 ggtggct---tacgcctgtaatcccagcactttgggagtcctaggcgggcagatcacctgcggtcaggagttggagaccagccggatcaacatggtgaaata---gtctctactaaaaatacaaaaat--------------------------taattccagctactggggaggctgaggcaggagaatcgctggaatccgggaggcagaggttgcagtgagccgagatcacgccgctccactccatcctggtagacggagcgagactcA--------------------------aaataaataatacaaataaataaataaaAT-Aaaaatagtgt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1935154 306 -   3067355 ggtggct---tacgcctgtaatcccagcactttgggagtcctaggcgggcagatcacctgcggtcaggagttcgagaccagccggatcaacaaggtggaaca---gtctctactaaaaatacaaaaactaggcgggcgtggtggcgcgggcctgtaattccagctactggggaggctgaggcaggagaatctctggaatccgggaggcagaggttgcagggagccgcgatcacgctgcaccactccatcctggtagacggagcgagactca--------------------------aaacaaataatacaaataaataaataaaat-aaaaatagtgt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171461167 312 - 171630274 ggtggct---cacgcctgtagtcccagcactttcgaaaactgaggagagcgaatca--tgaggcaaggagttcgaaaccagcctggccagcatggtgaaacctcggtctctactaaaaataaaaaaattacccgggcgtggtggcagatgcctgtaatcccagctactcgggaggctgaagcaggcgcatcacttgaacccgggaggcggaggttgcagtgagccgagaccgcaccagtgccctctagtctgggcgacagagagagactcggtatca--------------------aaaatcatcatcataataa--aaataaaataaaaaaTAGTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            286466 302 -    375362 ggtggct---cacgcctgtagtcccaccactttgggaaacggaggagggcggatca--tgaggcaaggagttcgaaaccagcctggctagcatggtgaaacccc-gtctctactaaaaatacaaaaattacccgggcgtggtgg---------gtaatcccagctactctgaaggctgaagcaggagcaacacgtgaacccgggaggcggaggttgcagtgagccgagaccctaccagtgccctctagcctgggcgacagagagagactcggtctcg--------------------aaaaTCATCATCATCttaa--aaataaaataaaaaataGTTT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      216112 303 -    285216 ggtggct---cacgcctgtagtcccagcagtttgggaaaccgaagagggcggatca--tgaggcaaggagttcgaaaccagcctggccagcatggtgaaacccc-gtctctactaaaaatacaaaa---acccgggcgtggtggcagatgcctgtaatcccagctactcgggaggctggagcaggagcatcacttgaacccgggaggcggaggttgcagtgagccgagaccgcaccagtgccctctagcctgggcgacagagagagactcggtctca--------------------aaaaTCATCATCGTAATA-------AAAATAAaaaatagttt
i aotNan1.NW_018494050v1   I 127 C 0
e dasNov3.JH561790             98953   0 -    302817 C
e canFam3.chr35             25950668   0 +  26524999 C
e otoGar3.GL873742           1590589   0 -   2232465 C
e cebCap1.NW_016108108v1      282458 533 -    373274 I

a score=22920.000000
s hg38.chr6_GL000254v2_alt    217955 2 +   4827813 CT
s panTro5.chr6              29205444 2 + 175400573 ct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29439447 2 + 173848474 ct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5240205 2 +   6154872 ct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74241753 2 + 122973662 CT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29418731 2 + 172585720 ct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29079939 2 - 170955103 CT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2069482 2 -   2996164 ct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1931847 2 -   2157725 ct
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28375325 2 -  71996105 CT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2065382 2 +   2316924 ct
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1935460 2 -   3067355 ct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171461479 2 - 171630274 CT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            286768 2 -    375362 CT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      216415 2 -    285216 ct
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1590589 2 -   2232465 CT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790             98953 0 -    302817 C
e canFam3.chr35             25950668 0 +  26524999 C
e cebCap1.NW_016108108v1      282458 533 -    373274 I

a score=25976.000000
s hg38.chr6_GL000254v2_alt    217957 2 +   4827813 GA
s panTro5.chr6              29205446 2 + 175400573 ga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29439449 2 + 173848474 ga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5240207 2 +   6154872 ga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74241755 2 + 122973662 GA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29418733 2 + 172585720 ga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29079941 2 - 170955103 GA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2069484 2 -   2996164 ga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1931849 2 -   2157725 ga
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28375327 2 -  71996105 GA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2065384 2 +   2316924 ga
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1935462 2 -   3067355 ga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171461481 2 - 171630274 GA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            286770 2 -    375362 GA
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      216417 2 -    285216 ga
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1590591 2 -   2232465 GA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             98953 2 -    302817 GA
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25950668 0 +  26524999 C
e cebCap1.NW_016108108v1      282458 533 -    373274 I

a score=890531.000000
s hg38.chr6_GL000254v2_alt    217959 94 +   4827813 TTCTGCAAAGGAGAGGAACAGACTCTGAATTGTGATGGCTCCAATAAGGATAAAGC-AGTCTCTGGAGAGCTGCCTGAACAGCCAGACAACCCAG
s panTro5.chr6              29205448 94 + 175400573 ttctgcaaaggagaggaacagactctgaattgtgatggctccaataaggataaagc-agtctctgaagagctgcctgaacagccagacaacccag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29439451 94 + 173848474 ttctgcaaaggagaggaacagactctgaattgtgatggctccaataaggataaagc-agtctctgaagagctgcctgaacagccagacaacccag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5240209 94 +   6154872 ttctgcaaaggagaggaacagactctgaattgtgatggctccaataaggataaagc-agtctctgaagagctgcctgaacagccagacaacccag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74241757 92 + 122973662 TTCTGCAAAGGAGAGGAACAGA--CTGAACTGTGATGGCTCCAATAAGGATAAAGC-AGTCTCTGAAGAGCTGCCTGAACAGCCAGACAACCCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29418735 94 + 172585720 ttctgcaaaggagaggaacagactctgaattgtgatggctccaataaagataaagc-agtttctgaagagctgcctgaacagccagacaacctag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29079943 94 - 170955103 TTCTGCAAAGGAGAGGAACAGACTCTGAATTGTGATGGCTCCAATAAAGATAAAGC-AGTTTCTGAAGAGCTGCCTGAACAGCCAGACAACCTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2069486 94 -   2996164 ttctgcaaaggagaggaacagactctgaattgtgatggctccaataaagataaagc-agtttctgaagagctgcctgaacagccagacaacctag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1931851 94 -   2157725 ttctgcaaaggagaggaacagactctgaattgtgatggctccgataaagataaagc-agtctctgaagagctgcctgaacagccagacaacccag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28375329 94 -  71996105 TTCTGCAAAGGAGAGGAACAGACTCTGAATTGTGATGGCTCCGATAAAGATAAAGC-AGTCTCTGAAGAGCTGCCTGAACAGCCAGACAACCCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2065386 94 +   2316924 ttctgcaaaggagaggaacagactctgaattgtgatggctccgataaagataaagc-agtctctgaagagctgcctgaacagccagacaacccag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1935464 94 -   3067355 ttctgcaaaggagaggaacagactctgaattgtgatggctccaataaagataaagc-agtctctgaagagctgcctgaacagccagacaacccag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171461483 74 - 171630274 TTCTGCACAGGAGAGGAACGGACTCGGAATGGTGCTGGCTCGAACAAGGCTAAAAGCAGTCTCTTTA---------------------AACCCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            286772 73 -    375362 TTCTGCAAAGAAGAGGAACAGACTCTGAATGATGCTGGCTCCAACAAAGGTAAAGG-AGTCTCTTTA---------------------AACTCAG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      216419 73 -    285216 ttctgcaaaggagaggaacagactctgaatggtgctggctccaacaaggGTAAAAC-AGTCTCTTTA---------------------AACCCAG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1590593 87 -   2232465 TTCTGCAAAGGAGAGGAACAGATTCTAAAT-------GCTGTAACAAGTATTAAGC-ATTCTCTGAGGAGCTGCCTGAACAGCCTGGCAATCCAG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25950668 91 +  26524999 TTCTACAAAGGAGAGGAACAGATCCTGAATAGCGAGGGCTCCCATAAGGATGAGGC-ATTCTCTAAAGA---ACCAGATTATACAGAGAGTCCAG
i canFam3.chr35            C 0 I 326
s dasNov3.JH561790             98955 86 -    302817 TTCTGCTAAGGAGATTAGC-------GAATGGTGATGCCTCCACCAGGAGCCACTG-GTTCTGCGAGGACCTGCCTGACCGGCCAGG-AACCCAG
i dasNov3.JH561790         C 0 C 0
e cebCap1.NW_016108108v1      282458 533 -    373274 I

a score=261739.000000
s hg38.chr6_GL000254v2_alt    218053 32 +   4827813 CTCTTAGGCTTCTCCCAAATC-TTTAACAGCAT
s panTro5.chr6              29205542 32 + 175400573 ctcttagGCTTCTCCCAAATC-TTTAACAGCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29439545 32 + 173848474 ctcttagGCTTCTCCCAAATC-TTTAACAGCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5240303 32 +   6154872 ctcttagGCTTCTCCCAAATC-TTTAACAGCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74241849 32 + 122973662 CTCTTAGGCTTCTCCCAAATC-TTTAACAGCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29418829 30 + 172585720 ctcttagGCTTCTCCCAAATC---TAACAGCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29080037 30 - 170955103 CTCTTAGGCTTCTCCCAAATC---TAACAGCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2069580 30 -   2996164 ctcttagGCTTCTCCCAAATC---TAACAGCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1931945 32 -   2157725 ctcttagGCTTCTTCCAAATC-TTTAACAGCAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28375423 30 -  71996105 CTCTTAGGCTTCTCCCAAATC---TAACAGCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2065480 32 +   2316924 ctcttagGCTTCTTCCAAATC-TTTAACAGCAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1935558 33 -   3067355 ctcttagGCTTCTCCCAAATCTTTTAACAGCAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171461557 32 - 171630274 CCGTTAGGCCTTTCCCGAACC-TTTAACAGCGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            286845 32 -    375362 CTGTTAGGCATCTCCCGAATC-TTTAACAGCCG
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      216492 32 -    285216 CTGTTAGGCCTCTCCCGAATC-TTGAGCAGCGG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1590680 32 -   2232465 CTGTCAAGCCTCTCCCAAAAC-CTTAATTGCAT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             99041 20 -    302817 ------------CTCTGAGTT-CTCAGCTGCAT
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25950759 326 +  26524999 I
e cebCap1.NW_016108108v1      282458 533 -    373274 I

a score=503092.000000
s hg38.chr6_GL000254v2_alt    218085 49 +   4827813 TTCCTTAACTGTGG-TAGATGC-AGGCTCCTGGAACCAGAGGC--------CTAGGGTC
s panTro5.chr6              29205574 49 + 175400573 TTCCTTAACTGTGG-TAGATGC-AGGCTCCTGGAACCAGAGGC--------CTAGGGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29439577 49 + 173848474 TTCCTTAACTGTGG-TAGATGC-AGGCTCCTGGAACCAGAGGC--------CTAGGGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5240335 49 +   6154872 TTCCTTAACTGTGG-TAGATGC-AGGCTCCTGGAACCAGAGGC--------CTAGGGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74241881 49 + 122973662 TTCCTTAACCGTGG-TAGATGT-AGGCTCCTGGAACCAGAGGC--------CTAGGGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29418859 50 + 172585720 TTCCTTAACTGTGGTTAGCTGC-AGACTTCTGGAACCAGAGGC--------CTAGGGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29080067 50 - 170955103 TTCCTTAACTGTGGTTAGCTGC-AGACTTCTGGAACCAGAGGC--------CTAGGGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2069610 50 -   2996164 TTCCTTAACTGTGGTTAGCTGC-AGACTTCTGGAACCAGAGGC--------CTAGGGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1931977 49 -   2157725 TTCCTTAACTGTGG-TAGCTGC-AGACTCCTGGAACCAGAGGC--------CTAGGGTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28375453 49 -  71996105 TTCCTTAACTGTGG-TAGCTGC-AGACTCCTGGAACCAGAGGC--------CTAGGGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2065512 49 +   2316924 TTCCTTAACTGTGG-TAGCTGC-AGACTCCTGGAACCAGAGGC--------CTAGCGTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1935591 49 -   3067355 TTCCTTAACTGTGG-TAGCTGC-AGACTCCTGGAACCAGAGGC--------CTAGGGTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171461589 50 - 171630274 TTCCTTAGCTGTGG-TAGATGCAAGGTTCCTGGAACCTGAGGC--------CTAAGGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            286877 50 -    375362 TTCCTTATCTGTGG-TAGATTCAAGGTTCCTGGAACCTGAGGC--------CTAGGGTC
i saiBol1.JH378348         C 0 I 380
s cebCap1.NW_016108108v1      282991 50 -    373274 TTCCTTATCTGTGG-TAGATGCAAGGTTCCTGGAACCTGAGGC--------CTAGGGTC
i cebCap1.NW_016108108v1   I 533 C 0
s aotNan1.NW_018494050v1      216524 50 -    285216 TTCCTTATCTGTGG-TAGATGCAAGGTCCCTAGAACCTGAGGC--------CTAGGGTC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1590712 56 -   2232465 CTGCTTAACTGTTG-CAGATAC-GTGTTTC-AGAACTAGAGGCTGAGACCTCTAGTGTC
i otoGar3.GL873742         C 0 I 8
s dasNov3.JH561790             99061 46 -    302817 ---CCCACCCCTGG-CAGGGGC-AGGTTCCCAGAACCCAAGGC--------TGAGGCTC
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25950759 326 +  26524999 I

a score=2081260.000000
s hg38.chr6_GL000254v2_alt    218134 197 +   4827813 CAGACGAAATTGTTAAGATGTTCCCTATAAAACGCTTCCTTAAGTCGGCAACAGAATGAACTGTTAAGAGAGCTGTCCTGAAATACAGACCCCTGAGGTCCAGACATGTTGG------------AGGAGAGCCCTCTCTTTTTGCAGCACGGACTGGGCCAGAGAGGTATAGCCTGCAAGATGAATTTCAGTATGTGTAACTGCTGGGG
s panTro5.chr6              29205623 197 + 175400573 CAGACGAAATTGTTAAGATGTTCCCTATAAAACGCTTCCTTAAGTCGGCAACAGAATGAACTGTTAAGAGAGCTGTCCTGAAATACAGACCCCTGAGGTCCAGACATATTGG------------AGGAGAGCCCTCTCTTTTTCCAGCACGGACTGGGCCAGAGAGGTATAGCTTGCAAGATGAATTTCAGTATGTGTAACTGCTGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29439626 197 + 173848474 CAGACGAAATTGTTAAGATGTTCCCTATAAAACGCTTCCTTAAGTCGGCAACAGAATGAACTGTTAAGAGAGCTGTCCTGAAATACAGACCCCTGAGGTCCAGACATATTGG------------AGGAGAGCCCTCTCTTTTTCCAGCACGGACTGGGCCAGAGAGGTATAGCTTGCAAGATGAATTTCAGTATGTGTAACTGCTGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5240384 197 +   6154872 CAGACGAAATTGTTAAGATGTTCCGTATAAAACGCTTCCTTAAGTCGGCAACAGAATGAACTGTTAAGAGAGCTGTCCTGAAATACAGACCCCTGAGGTCCAGACATGTTGG------------AGGAGAGCCCTCTCTTTTTCCAGCACGGACTGGGCCAGAGAGGTATAGCCTGCAAGATGAATTTCAGTATGTGTAACTGCTGGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74241930 209 + 122973662 CAGAAGAAACCGTTAAGATGTTCCCTATAAAACGCTTCCTTAAGTTGGCACCAGAATGAACTGTTAAGAGAGCTGTCCTGAAATACAGACCCCTAAGGTCCAGACATGTTGGAGGAGATGCCTAAGGAGAGCCCTCTCTTCTTCCAGCACGGACTGGGCCAGAGAGGTATACCCTGCAAGATGAATTTCAGTATGTGTAACTGCTGGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29418909 208 + 172585720 CAGAAGACACTGTTAAGATGTTCCCTATAAAACATTTCCTTAAGCCGACCCCAGAATGAACTGTTAAGAGAGCTGTCCTGAAATACAGACCCTTAAAGTCCAGACATTTTGGAGGAGATGCCTAATGAGAGCCCTCTCTTTTTCCAGCACAAACTGGGCCAGAGAGGTATAGCCTGCAAGATGAATTTCAGTATGTGTAA-TGCTGGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29080117 209 - 170955103 CAGAAGACACTGTTAAGATGTTCCCTATAAAACATTTCCTTAAGCCGACCCCAGAATGAACTGTTAAGAGAGCTGTCCTGAAATACAGACCCTTAAAGTCCAGACATTTTGGAGGAGATGCCTAATGAGAGCCCTCTCTTTTTCCAGCACAAACTGGGCCAGAGAGGTATAGCCTGCAAGATGAATTTCAGTATGTGTAACTGCTGGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2069660 209 -   2996164 CAGAAGACACTGTTAAGATGTTCCCTATAAAACATTTCCTTAAGCCGACCCCAGAATGAACTGTTAAGAGAGCTGTCCTGAAATACAGACCCTTAAAGTCCAGACATTTTGGAGGAGATGCCTAATGAGAGCCCTCTCTTTTTCCAGCACAAACTGGGCCAGAGAGGTATAGCCTGCAAGATGAATTTCAGTATGTGTAACTGCTGGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1932026 206 -   2157725 CAGAAGAAACTGTGAAGATGTTCCCTATAAAACATTTCCTTAAGTCGACCCCAGAATGAACTGTTAAGAGAGCTGTCCTGAAATACAGACCCTTGAAGTCCAGACATTTT---GGAGATGCCTAAGGAGAGCCCTCTCTTTTTCCAGCACAAACTGGGCCAGAGAGGTATAGCCTGCAAGATGAATTTCAGTATGTGTAACTGCTGGGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28375502 204 -  71996105 CAGAAGAAACTGTTAAGATGTTCCCTATAAAACATTTCCTTAAGTCGA--ACAGAATGAACTGTTAAGAGAGCTGTCCTGAAATACAGACCCTTGAAGTCCAGACATTTT---GGAGATGCCTAAGGAGAGCCCTCTCTTTTTCCAGCACAAACTGGGCCAGAGAGGTATAGCCTGCAAGATGAATTTCAGTATATGTAACTGCTGGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2065561 206 +   2316924 CGGAAGAAACTGTTAAGATGTTCCCTATAAAACATTTCCTTAAGTCGACCCCAGAATGAACTGTTAAGAGAGCTGTCCTGAAATACAGACCCTTGAAGTCCAGACATTTT---GGAGATGCCTAAGGAGAGCCCTCTCTTTTTCCAGCACAAACTGGGCCAGAGAGGTATAGCCTGCAAGATGAATTTCAGTATGTGTAACTGCTGGGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1935640 209 -   3067355 CAGAAGAAACTGTTAAGATGTTCCCTATAAAACATTTCCTTAAGTCGACCCCAGAATGAACTGTTAAGAGAGCTGTCCTGAAATACAGACCCCTAAAGTCCAGACATTTTGGAGGAGATGCCTAAGGAGAGCCCTCTCTTTTTCCAGCACAAACTGGGCCACAGAGGTATAGCCTACAAGATGAATTTCAGTATGTGTAACTGCTGGGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171461639 205 - 171630274 CGGAAGAAAC-TTTAAGATGTTCCCTACAAAACACCTCCTTAAGTCGGCCTCAGAATGAGCTATTAAGGAAGCTGTCCTGAGATACAAA-CCCTAAGGTCCAGACGTGTTGGAGGAGATGCCGAAGGAGTGCGCTGTCTT-TCTCAGCACAGACTGGG-CGGAGAGGTATAGCCTGCGAGACGAGCTGCAGTACGTGTGACCGCGGGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            287307 207 -    375362 CGGAAGAAACTTTTAAGATATTCCCCATAAAACACCTCCTTAAGTCGGCCCCCGAAGGAACTACTAAGAAAGCTGCCCTGAAATACAAACCCCTAAGGTCCAGACATTTTGGAGGAGACGCCTAAGGCGTGCCCTCTCTT-TTTCAGCACAGACTGGG-CGGAGAGGTGTAGCCTGCAAGATGAATTGCAGTATGTGTGACTGCTGGGG
i saiBol1.JH378348         I 380 C 0
s cebCap1.NW_016108108v1      283041 208 -    373274 CGGAAGAAAGTTTTAGGATGTTCCCTATAAAACGCCTCCTTAAATCGGTCTCAGAATGAACTATTAAGAAAGCTGTCCTGAAATACAAACCCCTAAGGTCCAGACATTTTGGAGGCGATGCCTAAGGAGTGCCCTCTCTTATTTCAGCACAGACTGGG-CGGAGAGGTATAGCCTGCAAGATGAATTGCAGTATGTGTGACTGCCGAGG
i cebCap1.NW_016108108v1   C 0 I 30
s aotNan1.NW_018494050v1      216574 204 -    285216 CGGAAGAAACTTTTAAGATGTTCCCTGTAAAACACCTCCTTAAGTCGGCCTCAGAATGAACTATTAAGAAAGCTGTCCTGAAATAC----CCCTAAGGTCCAGACATTTTGGAGAAGATGCCTAAGGACTGCCCTCTCTTTTTTCAGCACAGACTGGG-CGGAGAGGTATAACTTGCAAGATGAATTGCAGTATGTGTGACTTTTGGGG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1590776 193 -   2232465 CAGAAGACAC---TAAGATGTTCC-TATA--------CCTCAAGTTTGCATCCAAATGAACTGTTGAGCTAGCTGTCCTGCCATACAGATCCCCAA-GTCCAGACATTTTGGAGGAACTGTGCAAGGAGTGTCC--TCTTTTTCCAGCACAGGCTGGGCCAGAGAGGTTTTGTCTGC-AGATGACTTTCAGTATGCGTGACTCCAGAAG
i otoGar3.GL873742         I 8 I 1
s dasNov3.JH561790             99107 201 -    302817 CAGAGGGCCCTGGTAAGATGCTCCCTA-ATAGTGCCTTCT-GAGCCTGCACCAGAATGAACTGTCCGCAGAGCTCTTCAGAAATAC---TCTCCAAGGTCCCCACGTTTCAGAGAAGCAGCCCAAGGATTGT--TCTCTTTTCCCAAAACGGATTGGGCCAGAGA-ATGTAGCCTGCAGGATGAAATTCAGCAGGTATGATCCTTGAGG
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25950759 326 +  26524999 I

a score=227200.000000
s hg38.chr6_GL000254v2_alt    218331 32 +   4827813 TGATGATTGCAAGTAATCTAAGTTTGAGATGT
s panTro5.chr6              29205820 32 + 175400573 CGATGATTGCAAGTAATCTGAGTTTGAGATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29439823 32 + 173848474 CGATGATTGCAAGTAATCTGAGTTTGAGATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5240581 32 +   6154872 TGATGATTGCAAGTAATCTAAGTTTGAGATGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74242139 32 + 122973662 TGATGATTGCAAGTAGTCTAAATTTGAGATGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29419117 32 + 172585720 TAATGATTGCAAATAATCTAAGTTTGAAATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29080326 32 - 170955103 TAATGATTGCAAATAATCTAAGTTTGAAATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2069869 32 -   2996164 TAATGATTGCAAATAATCTAAGTTTGAAATGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1932232 32 -   2157725 TAATGATTGCAAATAATCTAAGTTTGAAATGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28375706 32 -  71996105 TAATGATTGCAAATAATCTAAGTTTGAAATGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2065767 32 +   2316924 TAATGTTTGCAAATAATCTAAGTTTGAAATGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1935849 32 -   3067355 TAATGATTGCAAATAATCTAAGTCTGAGATGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171461844 31 - 171630274 -CATGATCGCAGATGCTCCTCAGGTGCGCTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            287514 31 -    375362 -GATGATCGCAAATACTCCTCATGTGCGATTT
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      216778 31 -    285216 -GATGATCGCAGATACTCCTCATGTGCGACGT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1590970 32 -   2232465 GAATAATTCCAAATAATCCAAATTTGACATGT
i otoGar3.GL873742         I 1 C 0
s dasNov3.JH561790             99308 21 -    302817 GGACTATGGCAA-TAATCCAAA----------
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25950759 326 +  26524999 I
e cebCap1.NW_016108108v1      283249 30 -    373274 I

a score=2162327.000000
s hg38.chr6_GL000254v2_alt    218363 204 +   4827813 TGATTGTGTGGAATAAGATAGTGACAAGAAGCATGGAAAGAAAACCATAACATTTAATATGCAA----ATTAAATGattgat---ttgagaaatac---ttgtttatcagataccgtgctaggcactgaaaatata---gaactggataaaacaaattcagt----------ctctaacg---gaatttacagtcta---ggaggatgggtgggcaacagacaataaaaacgt
s panTro5.chr6              29205852 204 + 175400573 TGATTGTGTGGAGTAAGATAGTGACAAGAAGCATGGAAAGAAAACCATAACATTTAATATGCAA----ATTAAATGattgat---ttgagaaatac---ttgtttatcagataccgtgctaggcactgaaaatata---gaactggataaaacaaattcagt----------ctctaacg---gaatttacagtcta---ggaggatgggtgggcaacagacaataaaaacgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29439855 204 + 173848474 TGATTGTGTGGAGTAAGATAGTGACAAGAAGCATGGAAAGAAAACCATAACATTTAATATGCAA----ATTAAATGattgat---ttgagaaatac---ttgtttatcagataccgtgctaggcactgaaaatata---gaactggataaaacaaattcagt----------ctctaacg---gaatttacagtcta---ggaggatgggtgggcaacagacaataaaaacgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5240613 204 +   6154872 TGATTGTGTGGAGTAAGATAGTGACAAGACGCATGGAAAGAAAACCATAACATTTAATATGCAA----ATTAAGTGattgat---ttgagaaatac---ttgtttatcagatactgtgctaggcactgaaaatata---gaactggataaaacaaattcagt----------ctctaacg---gaatttacagtcta---ggaggatgggtgggcaacagacaataaaaacgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74242171 203 + 122973662 TGATTGTGTGGAGTAAGATAGTGACAAGAAGCATGGAAAGAAAACCATAACATTTGATAT-CAA----ATTAAGTGattgat---ttgagaaatac---ttgtttatcatatactgtgctaggcactgaaaatata---gaagtggataaaacaaattcagt----------ctctaacg---gaatttacaatcta---tgagggtgggtgggcaacagacaataaaaacgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29419149 204 + 172585720 TGATTTTGTGCAGTAAGATAGTGACAGGAAGCATGGAAAGAAAACCATAACATTTAATATGCAA----ATTAAGTGattgat---ttgagaaatac---ttgtttatcagatactgtactaggcactgaaaatata---gaagtggataaaacaaattcagt----------ctctaccg---gaatttacaatcta---ggaggatgggtgggcaacagacaataaagacgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29080358 204 - 170955103 TGATTTTGTGCAGTAAGATAGTGACAGGAAGCATGGAAAGAAAACCATAACATTTAATATGCAA----ATTAAGTGATTGAT---TTGAGAAATAC---TTGTTtatcagatactgtactaggcactgaaaatata---gaagtggataaaacaaattcagt----------ctctaccg---gaatttacaatcta---ggaggatgggtgggcaacagactataaagacgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2069901 204 -   2996164 TGATTTTGTGCAGTAAGATAGTGACAGGAAGCATGGAAAGAAAACCATAACATTTAATATGCAA----ATTAAGTGattgat---ttgagaaatac---ttgtttatcagatactgtactaggcactgaaaatata---gaagtggataaaacaaattcagt----------ctctaccg---gaatttacaatcta---ggaggatgggtgggcaacagacaataaagacgt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1932264 204 -   2157725 TGATTTTGTGCAGTAAGATAGTGACAGGAAACATGGAAAGAAAACCATAACATTTAATATGCAA----ATTAAGTGattgat---ttgagaaatac---ttgtttatcagatactgtactaggcactgaaaatata---gaagtggataaaacaaactcagt----------ctctaccg---gaatttacaatctg---ggaggatgggtgggcaacagacaataaagacgt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28375738 204 -  71996105 TGATTTTGTGCAGTAAGATAGTGACAGGAAGCATGGAAAGAAAACCATAACATTTAATATGCAA----ATTAAGTGATTGAT---TTGAGAAATAC---TTGTTtatcagatactgtactaggcactgaaaatata---gaagcggataaaacaaactcagt----------ctctaccg---gaatttacaatcta---ggaggatgggtgagcaacagacaataaagacgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2065799 204 +   2316924 TGATTTTGTGCAGTAAGATAGTGACAGGAGACATGGAAAGAAAACCATAACATTTAATATGCAA----ATTAAGTGattgat---ttgagaaatac---ttgtttatcagatactgtactaggcactgaaaatata---gaagtggataaaacaaactcagt----------ctctaccg---gaatttacaatctg---ggaggatgggtgggcaacagacaataaagacgt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1935881 204 -   3067355 TGATTTTGTGGAATAAGATAGTGACAAGAAGCATGGAAAGAAAACCACAACATTTAATATGTAA----ATTAAGTGattgat---ttgagaaatac---ttgtttatcagatactgtactaggcactgaaaatata---gaagtggataaaacaaattcagt----------ctctactg---gaatttacaatcta---ggaggatgggtgggcaacagacaataaagacgt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171461875 208 - 171630274 GGATTGCGTGGAGTGAGGTAGTGACAGGAAGCATCTACAGAAAACCGTAACCTTTAATATGCAAAATTATTAAGTGattgat---gtgagaagtac---ttgtttatcggataccgtgctaggcactgaaaatata---caagtggatatgacaaattctac----------ctctaatg---gaatttgcaatcta---ggaggatgggtgggcaacagacagtaaagacat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            287545 208 -    375362 GCATTGCGTGGAGTGAGGTAGTGACAGGAAGCATCTAGAAAAAACCGTAACATTTAATATGCAAAATAATTACGTGattgat---ttgagaagtac---ttgtttatcggataccgtgctaggcactgaaaataca---gaagtggatatgacaaattctat----------cgctaatg---gaatttacaatcta---ggaggttgggtgggcaacagacaacaaagacat
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      283279 208 -    373274 TGGTTGTGTGGAGTGAGGTAGTGACAGGAAGCATCTAGAGAAAACCATAACATTTAATATGCAAAATAATTAAGTGattgat---ttgagaagtac---ttgtttatcagataccgtgctaggcactgaaaatata----aagtggatatgtcaaattctat----------ctctaatg---gaatttacaatctag--ggaggttgggtgggcaacagacaataaagacat
i cebCap1.NW_016108108v1   I 30 C 0
s aotNan1.NW_018494050v1      216809 208 -    285216 GGATTGCGTGGATTGAGGTAATGACAGGAAGCATCTAGACAAAACCATAACATTTAATATGCAAAATAATTAAGTGattgat---ttgagaagtac---ttgtttatcagatgctgtgctaggtactgaaaacata---gaagtggatatgacaaattctat----------ctctaatg---gaatttacaaacta---ggaggatgggtgggcaacagacagtaaagacat
i aotNan1.NW_018494050v1   C 0 I 492
s otoGar3.GL873742           1591002 219 -   2232465 TGATTGCCTAGAGTAAGATAATGACAAGAAGTGAGAAATGAAAACAGTATCATTTAATATGTGA----ATTAATTTGTTGATTACttgagaactacttattatttttcagctactgtgctaggcacatgaaatatgtatgaagtggataaaacagatcagattcagcgacaactctaatg---aaatttacaattta---ag----tgggtggggaatagacaataaaggcat
i otoGar3.GL873742         C 0 I 1
s dasNov3.JH561790             99329 183 -    302817 -------------------AGTGACCGGGAATATGGAAGGAAAATAATCACATTTAATATGATAGTTAATTCATCGatttat---ttgaaaacaat---ttattgct-------tgcccccggccctgcaaataca---gggatagat-----agactcagt----------gggtgatgcccaaacttacagtttggccggaggtggggtggggaatagacaacagagatgt
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25950759 326 +  26524999 I

a score=46308.000000
s hg38.chr6_GL000254v2_alt    218567 4 +   4827813 t-aaa
s panTro5.chr6              29206056 4 + 175400573 t-aaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29440059 4 + 173848474 t-aaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5240817 5 +   6154872 taaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74242374 4 + 122973662 t-aaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29419353 4 + 172585720 t-aaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29080562 4 - 170955103 t-aaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2070105 4 -   2996164 t-aaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1932468 4 -   2157725 t-aaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28375942 4 -  71996105 t-aaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2066003 4 +   2316924 t-aaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1936085 4 -   3067355 t-aaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171462083 4 - 171630274 t-aaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            287753 4 -    375362 t-aaa
i saiBol1.JH378348         C 0 I 504
s cebCap1.NW_016108108v1      283487 4 -    373274 t-aaa
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      217509 4 -    285216 T-AAA
i aotNan1.NW_018494050v1   I 492 C 0
s otoGar3.GL873742           1591222 4 -   2232465 t-aaa
i otoGar3.GL873742         I 1 C 0
s dasNov3.JH561790             99512 4 -    302817 c-aaa
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25950759 326 +  26524999 I

a score=107236.000000
s hg38.chr6_GL000254v2_alt    218571 8 +   4827813 -aaataaaa
s panTro5.chr6              29206060 8 + 175400573 -aaataaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29440063 8 + 173848474 -aaataaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5240822 8 +   6154872 -aaataaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74242378 8 + 122973662 -aaataaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29419357 8 + 172585720 -aaataaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29080566 8 - 170955103 -aaataaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2070109 8 -   2996164 -aaataaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1932472 8 -   2157725 -aaataaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28375946 8 -  71996105 -aaataaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2066007 8 +   2316924 -aaataaaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1936089 8 -   3067355 -aaataaaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171462087 8 - 171630274 -aaataaaa
i calJac3.chr4             C 0 I 716
s saiBol1.JH378348            288261 8 -    375362 -aaataaaa
i saiBol1.JH378348         I 504 C 0
s cebCap1.NW_016108108v1      283491 8 -    373274 -aaataaaa
i cebCap1.NW_016108108v1   C 0 I 500
s aotNan1.NW_018494050v1      217513 8 -    285216 -AAATAAAA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1591226 8 -   2232465 -aaataaaa
i otoGar3.GL873742         C 0 I 1
s dasNov3.JH561790             99516 9 -    302817 caattaaaa
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25950759 326 +  26524999 I

a score=34230.000000
s hg38.chr6_GL000254v2_alt    218579 4 +   4827813 gaac
s panTro5.chr6              29206068 4 + 175400573 gaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29440071 4 + 173848474 gaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5240830 4 +   6154872 gaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74242386 4 + 122973662 gagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29419365 4 + 172585720 gaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29080574 4 - 170955103 gaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2070117 4 -   2996164 gaac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1932480 4 -   2157725 gaac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28375954 4 -  71996105 gaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2066015 4 +   2316924 gaac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1936097 4 -   3067355 gaac
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            288269 4 -    375362 gaaC
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      217521 4 -    285216 GAAC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1591235 3 -   2232465 GAA-
i otoGar3.GL873742         I 1 C 0
s dasNov3.JH561790             99525 4 -    302817 ggac
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25950759 326 +  26524999 I
e cebCap1.NW_016108108v1      283499 500 -    373274 I
e calJac3.chr4             171462095 716 - 171630274 I

a score=108070.000000
s hg38.chr6_GL000254v2_alt    218583 12 +   4827813 aaggaaacttta
s panTro5.chr6              29206072 12 + 175400573 aaggaaacttta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29440075 12 + 173848474 aaggaaacttca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5240834 12 +   6154872 aaggaaacttta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74242390 12 + 122973662 aaggcaacttta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29419369 12 + 172585720 aaggaaacttta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29080578 12 - 170955103 aaggaaacttta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2070121 12 -   2996164 aaggaaacttta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1932484 12 -   2157725 aaggacatttta
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28375958 12 -  71996105 aaggaaacttta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2066019 12 +   2316924 aaggacatttta
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1936101 12 -   3067355 aaggaaacttta
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            288273 12 -    375362 AAGGAAACTTTA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      283999 12 -    373274 AAGGAAACTTCA
i cebCap1.NW_016108108v1   I 500 C 0
s aotNan1.NW_018494050v1      217525 12 -    285216 AAGGAAACTGCA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1591238 10 -   2232465 AAAGAAAGTA--
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790             99529 12 -    302817 aaggcaacttca
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25950759 326 +  26524999 I
e calJac3.chr4             171462095 716 - 171630274 I

a score=971811.000000
s hg38.chr6_GL000254v2_alt    218595 113 +   4827813 tatagt---------------------------------------------------------------------------------------------------------------------aaaaaattctatgaaga--aaataaaacagcttgaggttgatgtgatgggagGTTGGTGAGTGAAAGAAGGGATGG----------------------------------------------------------------------TGTG------------------------------------------TTGGTTTC-----CTAGGGCTGCCACAACAAATT
s panTro5.chr6              29206084 114 + 175400573 tatagta--------------------------------------------------------------------------------------------------------------------aaaaaattctatgaaga--aaataaaacagcttgaggttgatgtgatgggaggctggtgagtgagagAAGGGATGG----------------------------------------------------------------------tgtg------------------------------------------ttggtttc-----ctagggctgccacaacaaaTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29440087 113 + 173848474 tatagt---------------------------------------------------------------------------------------------------------------------aaaaaattctatgaaga--aaataaaacagcttgaggttgatgtgatgggaggctggtgagtgagagAAGGGATGG----------------------------------------------------------------------tgtg------------------------------------------ttggtttc-----ctagggctgccacaacaaaTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5240846 113 +   6154872 tatagt---------------------------------------------------------------------------------------------------------------------aaaaaattctatgaaga--aaataaaacaacttaaggttgatgtgatgggaggttggtgagtgagagAAGGGATGG----------------------------------------------------------------------tgtg------------------------------------------ttggtttc-----ctagggctgccacaacaaaTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74242402 113 + 122973662 tatagt---------------------------------------------------------------------------------------------------------------------aaaaaattctatgaaga--aaataaaacagcttgaggttgatgtgatgggTGGTTGGTGAGTGAGAGAAGAGATGG----------------------------------------------------------------------tgtg------------------------------------------ttagtttc-----ctagggctgccacaacaaaTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29419381 107 + 172585720 tatagc----------------------------------------------------------------------------------------------------------------------aaaaattatatgaaga--aaataaaacagcttgagg-tgacgtgatgggaggttg----gtgagagaagggatAG----------------------------------------------------------------------Cgtg------------------------------------------ttagtttc-----ctagggctgccataacaaaTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29080590 107 - 170955103 tatagc----------------------------------------------------------------------------------------------------------------------aaaaattatatgaaga--aaataaaacagcttgagg-tgacgtgatgggaggttg----gtgagagaagggatAG----------------------------------------------------------------------Cgtg------------------------------------------ttagtttc-----ctagggctgccataacaaaTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2070133 107 -   2996164 tatagc----------------------------------------------------------------------------------------------------------------------aaaaattatatgaaga--aaataaaacagcttgagg-tgacgtgatggcaggttg----gtgagagaagggatAG----------------------------------------------------------------------tgtg------------------------------------------ttagtttc-----ctagggctgccataacaaaTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1932496 107 -   2157725 tatagt----------------------------------------------------------------------------------------------------------------------aaaaattatatcaaga--aaataaaacagcttgagg-tgacgtgatgggaggttg----gtgagagaagggatgG----------------------------------------------------------------------tgtg------------------------------------------ttagtttc-----ctagggctgccataacaaaTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28375970 107 -  71996105 tatagt----------------------------------------------------------------------------------------------------------------------aaaatttatatgaaga--aaataaaacagcttgagg-tgacgtgatgggaggttg----gtgagagaagggatgG----------------------------------------------------------------------tgtg------------------------------------------ttagtttc-----ctagggctgccataacaaaTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2066031 107 +   2316924 tatagt----------------------------------------------------------------------------------------------------------------------aaaaattatatgaaga--aaataaaacagcttgagg-tgacgtgatgggaagttg----gtgagagaagggatgG----------------------------------------------------------------------tgtg------------------------------------------ttagtttc-----ctagggctgccataacaaaTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1936113 111 -   3067355 tgtagt----------------------------------------------------------------------------------------------------------------------aaaaatgatatgaaga--aaataaaacagcttgagg-tgacgtgatgggaggttggtgagtgagagAAGCGACGG----------------------------------------------------------------------tgtg------------------------------------------ttagtttc-----ctagggctgccataacaaaTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171462811 111 - 171630274 TATAGT---------------------------------------------------------------------------------------------------------------------AAGACATTCTATGAAGA--AAATAAAGCCGCTTGAGG-TGAGGCGACCGGAGGTTGGCGAATGAGAGAAGGGATGG----------------------------------------------------------------------T-TA------------------------------------------TTAGTCTC-----CTAGGCCTGCCATAACAAATT
i calJac3.chr4             I 716 C 0
s saiBol1.JH378348            288285 112 -    375362 TATAGT---------------------------------------------------------------------------------------------------------------------AAAACATTCTATGAAGA--AAATAAAGCAGCTTGAGG-TGAGGTGATGGGAGGTTGGTGAATGAGCGACGGGATGG----------------------------------------------------------------------TGTA------------------------------------------TTAGTCTT-----CTAGGCCTGCCATAACAAATT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      284011 112 -    373274 TACAGT---------------------------------------------------------------------------------------------------------------------AAAACATTCTATGAAGA--AAATAAAGCAGCTtgagg-tgaggtgatgggaggttggtgaATGAGAGAAGGGATGG----------------------------------------------------------------------tgta------------------------------------------ttagtctc-----ctaggcctgccataacaaaTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      217537 112 -    285216 CATAGT---------------------------------------------------------------------------------------------------------------------AAAACATTCTATGAAGA--AAATAAAGCAGCTTGAGG-TGAGATGATGGGAGGTTGGTGAATGAGAGAAGGGATGG----------------------------------------------------------------------TGTA------------------------------------------TTAGTCTC-----CGAGGCCTGCCATAACAAACT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1591248 231 -   2232465 TATAGTAACAAAAATAAACCAGGTTgggcggtgcctgtggctcaaagaagtagggcgctgctggccccacataccagagatggcaggttcaaaactggcccaggccaaaaactgcaaaaaattaaaaaataataataataataaataaaCCAGGTTGAGG-TGATGGGATGAGAGGCTGGCGAGTGACAGAAGAGATGG----------------------------------------------------------------------TTta------------------------------------------gtagtttc-----ccagggctgccttaacaaatt
i otoGar3.GL873742         C 0 I 715
s dasNov3.JH561790             99541 220 -    302817 tgtagt----------------------------------------------------------------------------------------------------------------------ataagtgctgtacaga--g---aaaacagggtgagg-ctatgT--TGGGAGGTTGGTGAGCGAAAGATGGGATGGGAACCCTACTTGGGACCCAACTAGATAAAAGGCCAGTCAAGGAGATTGCCTGTGCATGAAGAAGAATCAATGTGATTTGGTAGCTGCTTAGATTATAAAGGGTGAAGAAATCCAAATTAGTTTCATTTTTTGAGACTGGGAAAACAA---
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25950759 326 +  26524999 I

a score=270791.000000
s hg38.chr6_GL000254v2_alt    218708 27 +   4827813 GAATATCAGGTTTTCATCTGTCTATTC
s panTro5.chr6              29206198 27 + 175400573 GAATATCAGGTTTTCATCTGTCTATTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29440200 27 + 173848474 GAATATCAGGTTTTCATCTGTCTATTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5240959 27 +   6154872 GAATATCAGGTTTTCATCTGTCTATTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74242515 27 + 122973662 GAATATCAGGTTTTCATCTGTCTATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29419488 27 + 172585720 GAGTATCAGGTTTTCATCTGTCTATTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29080697 27 - 170955103 GAGTATCAGGTTTTCATCTGTCTATTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2070240 27 -   2996164 GAGTATCAGGTTTTCATCTGTCTATTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1932603 27 -   2157725 GAATATCAGGTTTTCATCTGTCTATTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28376077 27 -  71996105 GAATATCAGGTTTTCATCTGTCTATTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2066138 27 +   2316924 GAATATCAGGTTTTCATCTGTCTATTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1936224 27 -   3067355 GAATATCAGGTTTTCATCTGTCTATTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171462922 25 - 171630274 AAATATGAGGTTTTAATCTGTC--TTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            288397 27 -    375362 TAATATCAGGTTTTTATCTGTCTATTC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      284123 27 -    373274 GAATATAAGCTTTTTATCTGTCTATTC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      217649 27 -    285216 GAATATCACGTTTTTATCTGTCTTTTC
i aotNan1.NW_018494050v1   C 0 C 0
s dasNov3.JH561790             99761 26 -    302817 -GGCACCGGGTTTTTGTTTCTCTCATC
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25950759 326 +  26524999 I
e otoGar3.GL873742           1591479 715 -   2232465 I

a score=950141.000000
s hg38.chr6_GL000254v2_alt    218735  94 +   4827813 -----ATTTTTTCAATA---AATTAAGTTGCACCAGTAGAAGGATACTGTCCCACGAGGGAA-----------------------------------------------TTGAGGTCAGAAGAACTCGGAGAAAACAGCAAGCCCACTG
s panTro5.chr6              29206225  94 + 175400573 -----ATTTTTTCAATA---AATTAAGTTGCACCAGTAGAAGGATACTGTCCCACGAGGGAA-----------------------------------------------TTGAGGTCAGAAGAACTCGGAGAAAACAGCAAGCCCACTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29440227  94 + 173848474 -----ATTTTTTCAATA---AATTAAGTTGCACCAGTAGAAGGATACTGTCCCACGAGGGAA-----------------------------------------------TTGAGGTCAGAAGAACTCGGAGAAAACAGCAAGCCCACTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5240986  94 +   6154872 -----ATTTTTTCAACA---AATTAAGTTGCACCAGTAGAAGGACACTGTCCCACGAGGGAA-----------------------------------------------TTGAGGTCAGAAGAACTCAGAGAAAACAGCAAGCCCACTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74242542  94 + 122973662 -----ATTTTTTCAATA---AATTAAGTTGCATCAGTAGAAGGATACTGTCCCATGAGGGAA-----------------------------------------------CTGAGGTCAGAAGAACTAGGACAAAACAGCATGCCCCCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29419515  94 + 172585720 -----ATTTTTTCAATA---GATTAAGTTGCATCGGTAGGAGGATACTGTCCCAAGAGGGAA-----------------------------------------------TTGAGATCAGAGGAACTTGGACAAAACAGTATGCCTTCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29080724  94 - 170955103 -----ATTTTTTCAATA---GATTAAGTTGCACCGGTAGGAGGATACTGTCCCAAGAGGGAA-----------------------------------------------TTGAGATCAGAGGAACTTGGACAAAACAGTATGCCCTCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2070267  94 -   2996164 -----ATTTTTTCAATA---GATTAAGTTGTACCGGTAGGAGGATACTGTCCCAAGAGGGAA-----------------------------------------------TTGAGATCAGAGGAACTTGGACAAAACAGTATGCCCTCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1932630  94 -   2157725 -----ATTTTTTCAATA---GATTAAGTTGCACTGGTAGGAGGATACTGTCCCAAGAGAGAA-----------------------------------------------TTGAGATCAGAGGAACTTGGACAAAACAGTATGCCCTCTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28376104  94 -  71996105 -----ATTTTTTCAATA---GATTAAGTTGCACCGGTAGGAGGATACTGTCCCAAGAGGGAA-----------------------------------------------TTGAGATCAGAGGAACTTGGACAAAACAGTATGCCCTCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2066165  94 +   2316924 -----ATTTTTTCAATA---GATTAAGTTGCACCGGTAGGAGGATACTGTCCCAAGAGGGAA-----------------------------------------------TTGAGATCACAGGAACTTGGACAAAACAGTATGCCCTCTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1936251  94 -   3067355 -----ATTTTTTCAATA---GATTAAGTTGCACCGGTAGGAGGATACTGTCCCAAGAGGGAA-----------------------------------------------TTGAGATCAGAGGAACTCGGACAAAACAGTATGCCCTCTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171462947  90 - 171630274 -----ATTTTTTCT-------ATTAAGTTGCACCAGTAGGAGGATACCGTCCCAAGAGGGAA-----------------------------------------------CTAAAGTCAGAGGAACTCGGACAAAGCAGCATGTCCACTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            288424  94 -    375362 -----ATTTTTTCCATT---AATTAAATTGCACCAGTAGAAGGATACCGTCCCAAGAAGGAA-----------------------------------------------CTAAAGTCAGAGGAACTCGGACAAAACAGCATGTCCACTG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      284150  94 -    373274 -----ATTTTTTCCATT---AATTAAATTGCACCAGTAGGAGGATACCGTCCCAAAAAAGAA-----------------------------------------------CTAAAGTCAGAGGAACTCGAACAAAACAGCATGCCCACTG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      217676  94 -    285216 -----ATTTTTTCTGTT---AATTAAGTTGCACCAGTAGGAGGATACCGTCCCAAGAAGGAA-----------------------------------------------CTAAAGTCAGAGGAACTCAGACGAAACAGCATGTCCACTG
i aotNan1.NW_018494050v1   C 0 C 0
s canFam3.chr35             25951085  97 +  26524999 -----atatttttaaaaaaGAACTAAGTTGCATCAATAGAAGGGTAGTGTTCTAAGAAGGAC-----------------------------------------------TAGAAATCAGAGGAACTTGGACAAAAGAGCTTGTTCATTG
i canFam3.chr35            I 326 C 0
s dasNov3.JH561790             99787 133 -    302817 ACTCATTTTTTTCAATA---AAT-------------tagaaggatacagtcccaggaaggagagtgatagtcttgctgtactctgcgttaatcagaaaacatctATGGCATAAAATCAGAGGAACTTGGACAGAAGAGCTCGCATGTTT
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1591479 715 -   2232465 I

a score=207790.000000
s hg38.chr6_GL000254v2_alt    218829 43 +   4827813 GAAAGAGATGAT-ACT----CAT-----AAGAAGAACTA---AAAGAGAT--------TTACTA
s panTro5.chr6              29206319 43 + 175400573 GAAAGAGATGAT-ACT----CAT-----AAGAAGAACTA---AAAGAGAT--------TTACTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29440321 43 + 173848474 GAAAGAGATGAT-ACT----CAT-----AAGAAGAACTA---AAAGAGAT--------TTACTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5241080 43 +   6154872 GAAAGAGATGAT-ACT----CAT-----AAGAAGAACTG---AAAGAGAT--------TTACTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74242636 43 + 122973662 GAAAGAGATGAT-ACT----CAT-----AACAAGAACTA---AAAGAGAT--------TCACTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29419609 39 + 172585720 GAAAGAGATGGT-ACT-------------ACAAAAACTA---AAAGAGAT--------TTACTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29080818 39 - 170955103 GAAAGAGATGGT-ACT-------------ACAAAAACTA---AAAGAGAT--------TTACTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2070361 39 -   2996164 GAAAGAGATGGT-ACT-------------ACAAAAACTA---AAAGAGAT--------TTACTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1932724 39 -   2157725 GAAAGAGATGGT-ACT-------------ACAAAAACTA---AAACAGAT--------TTACTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28376198 39 -  71996105 GAAAGAGATGGT-ACT-------------ACAAAAACTA---AAAGAGAT--------TTACTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2066259 39 +   2316924 GAAAGAGATGGT-ACT-------------ACAAAAACTA---AAAGAGAT--------TTACTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1936345 17 -   3067355 G------------------------------------TA---AAAGAGAT--------TTACTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171463037 48 - 171630274 GAAAGAGATGAT-ACT----CATTACACAGAAAGAACTA---AAGCAGAT--------GTGCTA
i calJac3.chr4             C 0 I 1040
s saiBol1.JH378348            288518 47 -    375362 GAAAGAGATGAT-ACT----CATTACAGGAAAAGAACTA---AAACAGAT--------GTACT-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      284244 34 -    373274 GAAAGAGATGAT-AAT----CATTACACGAAAAGAACTA-------------------------
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      217770 44 -    285216 GAAAGAGATGAT-ACT----CATGACACGGAAAGAAGTA---AAACAGAT--------GT----
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1592194 47 -   2232465 GAAAGAAA-GAA-AGT----CATTAC---AGAAGAACTGAAGAAACAGAC--------CAGCCA
i otoGar3.GL873742         I 715 C 0
s canFam3.chr35             25951182 52 +  26524999 GAAAGAGACGAA-GATAAGCCATTGCACACATAGAAGTA---AAGAAGAA--------CATCCA
i canFam3.chr35            C 0 I 3
s dasNov3.JH561790             99920 55 -    302817 GAAAGAGATGAAGACT------TTCCAAGTAGAGAACTG---AAGGAAATACAAACGCTTTCCA
i dasNov3.JH561790         C 0 C 0

a score=46697.000000
s hg38.chr6_GL000254v2_alt    218872 6 +   4827813 GAACTT
s panTro5.chr6              29206362 6 + 175400573 GAACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29440364 6 + 173848474 GAACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5241123 6 +   6154872 GAACTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74242679 6 + 122973662 GAACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29419648 6 + 172585720 GAACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29080857 6 - 170955103 GAACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2070400 6 -   2996164 GAACTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1932763 6 -   2157725 GAACTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28376237 6 -  71996105 GAACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2066298 6 +   2316924 GAACTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1936362 6 -   3067355 GAACTC
i colAng1.NW_012115566v1   C 0 I 1
s cebCap1.NW_016108108v1      284278 5 -    373274 AAACA-
i cebCap1.NW_016108108v1   C 0 C 0
s otoGar3.GL873742           1592241 6 -   2232465 GAACTT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25951237 6 +  26524999 GTACTT
i canFam3.chr35            I 3 C 0
s dasNov3.JH561790             99975 6 -    302817 GACCTT
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            288565 0 -    375362 C
e aotNan1.NW_018494050v1      217814 0 -    285216 C
e calJac3.chr4             171463085 1040 - 171630274 I

a score=2678881.000000
s hg38.chr6_GL000254v2_alt    218878 290 +   4827813 GATAAGCCG-TCGGGACAAAGAGAGCTGAGACTTCGTCTGTCTGACAACATA--TGCCGGGCCCGGC----AATTATAGAGATAATTGTATACTGAACAAAT---------AGGGTTATTTGTGGAAGTTGGGGAC-AAAATGGC--AGCtgccccctctgaggttcgaactcaggaccttcagattatgagactgacgcgctgcctactgcgctaaggaggcAGACAACT-AGTGCTCCTCAGCA-GGTGTTTTCAACACTGATTTTTACCTTATTTAAACATT-TT--TGTCTACATTACCTTTATTTTAAA
s panTro5.chr6              29206368 290 + 175400573 GATAAGCCG-TCGGGACAAAGAGAGCTGAGACTTCGTCTGTCTGACAACATA--TGCCGGGCCCGGC----AATTATAGAGATAATTGTATACTGAACAAAT---------AGGGTTATTTGTGGAAATTGGGGGC-AAAACAGC--AGCtgccccctctgaggttcgaactcaggaccttcagattatgagactgacgcgctgcctactgcgctaaggaggcAGACAACT-AGTCCTCCTCAGCA-GGTGTTTTCAACACTGATTTTTACCTTATTTAAATATT-TT--TGTCTACATTACCTTTATTTTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29440370 287 + 173848474 GATAAGCCG-TCGGGACAAAGAGAGCTGAGACTTCGTCTGTCTGACAACATA--TGCCGGGCCCGGC----AATTATAGAGATAATTGTATACTGAACAAAT---------AGGGTTATTTGTGGAAATTGG---C-AAAACAGC--AGCtgccccctctgaggttcgaactcaggaccttcagattatgagactgacgcgctgcctactgcgctaaggaggcAGACAACT-AGTACTCCTCAGCA-GGTGTTTTCAACACTGATTTTTACCTTATTTAAATATT-TT--TGTCTATATTACCTTTATTTTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5241129 276 +   6154872 GATAAGCCG-TCGGGACACAGAGTGCTGAGACTTCGTCTGTCTGATAACA---------------------AACTATAGAGATAATTGTATACTGAACAAAT---------AGGGTTATTTATGGAAGTTGGGAACAAAAACGTC--AGCtgccccctctgaggttcgaactcaggaccttcagattatgagactgacgcgctgcctactgcgctaaggaggcAGACGACT-AACACTCCTCAGCA-GGTGTTTTCAACACTGATTTTTACCTTATTTAAACATT-TT--TGTCTACATTACCTTTATTTTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74242685 290 + 122973662 GATAAGCCG-TCGGATCATAGAGAGCCGAGACTTCGCCTGTTTGACAACATA--TGCTTGTCCCAAG----AATTATAGAGATAGTTGTATACTGAGCAAAT---------ACTGTTATTTATGGAAGTTGGGGAC-AAAACACC--AACtgccccctctgaggttcgaactcaggaccttcagattatgagactgacgcgctgcctactgcgctaaggaggcAGATAGCC-AGCACTCCTTATCA-AGTATTTTCAACACTGATTTTTACTTTATTTAAACATT-TT--TGTCTATATTACCTTTATTTTAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29419654 292 + 172585720 GATAATCCG-TCGGGACTTAGAGAGTTGAGACTTCATTTGTTTGACAACATA--TACGGGGCCAAGC----AATTATAGAGATAATTATATAATGAACAAAT---------ACGGTTAGTTTTTTAAGTTGGGGAC-AAAATAGC--AGCtgccccctctgaggttcgaactcaggaccttcagattatgagactgacgcgctgcctactgcgctaaggaggcAGACAGCA-AAAAGTTTTCGTCA-CGTGTTTTCAACACTGATTTTTACTTCATTTAAACTTT-TTAATGTCTACATTACCTTTATTTTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29080863 292 - 170955103 GATAATCCG-TCGGGACTTAGAGAGTTGAGACTTCATTTGTTTGACAACATA--TACGGGGCCAAGC----AATTATAGAGATAATTATATAATGAACAAAT---------ACGGTTAGTTTTTTAAGTTGGGGAC-AAAATAGC--AGCtgccccctctgaggttcgaactcaggaccttcagattatgagactgacgcgctgcctactgcgctaaggaggcAGACAGCA-AAAAGTTTTCGTCA-CGTGTTTTCAACACTGATTTTTACTTCATTTAAACTTT-TTAATGTCTACATTACCTTTATTTTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2070406 293 -   2996164 GATAATCCG-TCGGGACTTAGAGAGTTGAGACTTCATTTGTTTGACAACATA--TACGGGGCCAAGC----AATTATAGAGATAATTATATAATGAACAAAT---------ACGGTTAGTTTTTTAAGTTGGAGACAAAAATAGC--AGCtgccccctctgaggttcgaactcaggaccttcagattatgagactgacgcgctgcctactgcgctaaggaggcAGACAGCA-AAAGCTTTTCGTCA-CGTGTTTTCAACACTGATTTTTACTTCATTTAAACTTT-TTAATGTCTACATTACCTTTATTTTAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1932769 292 -   2157725 GATAATCCG-TCGGGACTTAGAGAGCTGAGACTTCAATTGTTTGACAACATA--TACGGGGCCAAGG----CATTATAGAGATAATTATATAATGAACAAAT---------ACGGTTAGTTTTTTAAGTTGGAGAC-AAAACAGC--AGCtgccccctctgaggttcgaactcaggaccttcagattatgagactgacgcgctgcctactgcgctaaggaggcAGACAACG-GGGTGTTTTCGTCA-GGTGTTTTCAACACTGATTTTTACTTCATATATACTTT-TTAATGTCTACATTACCTTTATTTTAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28376243 292 -  71996105 GATAATCCG-TCGGGACTTACAGAGCTGAGACTTCATTTGTTTGACAACATA--TACGGGGCCAAGG----GATTATAGAGATAATTACATAATGAACAAAT---------ATGGTTAGTTTTTTAAGTTGGGGAC-AAAACATC--AGCtgccccctctgaggttcgaactcaggaccttcagattatgagactgacgcgctgcctactgcgctaaggaggcAGACAGTC-AAAGCTTTTCGTCA-GGTGTTTTCAACACTGATTTTTACTTCATTTAAACTTT-TTAAAGTCTACATTACCTTTATTTTAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2066304 292 +   2316924 GATAATCCG-TCGGGACTTAGAGACCTGAGACTTCATTTGTTTGACAACATA--TACGGGGCCAAGG----CATTATAGAGATAATTATATAATGAACAAAT---------ACGGTTAGTTTTTTAAGTTGGGGAC-AAAACAGC--AGCtgccccctctgaggttcgaactcaggaccttcagattatgagactgacgcgctgcctactgcgctaaggaggcAGACAACG-GAGTGTCTTCGTCA-GGTGTTTTCAACACTGATTTTTACTTCATTTATACTTT-TTAATGTCTACATTACCTTTATTTTAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1936369 292 -   3067355 GATAATCCG-TCGGGACTTAGAGAGCTGAGACTTGATCTGTTTGACAACATA--TACGGAGCCAAGA----AATTATAGAGATAATTATATAATGAACAAAT---------ATGGTTAGTTTTTTAAGTTGGGGAC-AAAACAGC--AGCtgccccctctgaggttcgaactcaggaccttcagattatgagactgacgcgctgcctactgcgctaaggaggcAGACGGCA-CACCCTCTTTGTCA-GGTATGTTCAACACTGATTTTTACTTCATTTAAACTTT-TTAAAGTCTATATTACCTGTATTTTAAA
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chr4             171464125 289 - 171630274 GATGTGCTG-TCGGGACATGAAGAGCTGAGACTTCATATGTTTGACAACAGA--TACGTAGCCCAGGAATTAATTAC-AAGGTGGATGTATAATGAACGAGT---------ACGGTTATTCATGGCAGTTGGGGAT-AAAATGCG--AGCtgccccctctgaggttcgaactcaggaccttcagattatgagactgacgcgctgcctactgcgctaaggaggcTCCCGGAA-AACGCCCCTCATTA-GGTTTTTTCAACACTGATTTTTACCTTGTTTAAACTT-------GTCTGCATTACCTTTATTTTAAA
i calJac3.chr4             I 1040 C 0
s saiBol1.JH378348            288565 275 -    375362 --------G-TCGGGACATAGAGACTTGAGATTTAATCTGTCTGACAACAGA--CGCGTGGCCCAGG----AATGAC-GAGATGGATGTATAATGAACGAGT---------ATGGTTGTTTATGGCAGTTGGAGAC-AAAA------GGCtgccccctctgaggctcgaactcaggaccttcagattatgagactgacgcgctgcctactgcgctaaggaggcACGCGAGG-ACACCCCTTCATCA-GATATTTTCAACACTGATTTTCACTTTGTTTAAACTTT-----GGTCCACATTACCTTTACTTTAAA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      284283 283 -    373274 GATGTGCTG-TCGGGACATAGAGAGCTGAGACTTAATCTGTTTGACAACAGA--TACGTGGCCCATG----AATTAC-AAGATGGATGTATAATGAACGAGT---------ACGGTTGTTTATGACAGTTGGGGAC-AAAA------GGCtgccccctctgaggttcgaactcaggaccttcagattatgagactgacgcgctgcctactgcgctaaggaggcACGCTAGG-ATGGCTCTTCATCA-GATATTTTCAACACTGATTTTCACCTTGTTTAAACTTT-----TGTCCACTTTACCTTTACTTTAAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      217814 282 -    285216 -----GCTG-TCGGGACATGGAAAGCTGAGACTTCATCTGTTTGACAACAGA--TACGTGGCCCAGG----AATTAC-GAGATGGATGTATAATAAACGAGT---------ACGGTTATTTATGGCAGTTGTGGAC-AAAAGGCA--AACtgccccctctgaggttcgaactcaggaccttcagattatgagactgacgcgctgcctactgcgctaaggaggcACAAGAAA-GCAGGTCCTCATCA-GGTATTTTCAACGTTGATTtttaccttgtttaaacttt-----tgtctactttacctttactttaAA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1592247 292 -   2232465 CATAATGAA-AGAGGTAGAAGAAAGTGGAGCCTTAGTTT-CTTGACGTCA-----GGGCAGTTCAGG----GTTGGT-GAAGTAGGCGTGCA--GGACAACTGCCGTAACGATGGTGAAGGGCCCAGTGTAGGAGC-GAAAAAACGGAACtgccccctctgaggttcgaactcaggaccttcagattatgagactgacgcgctgcctactgcgctaaggaggcAGGTGGCT-GAGCGTTCTCATTA-TGTATTTTTAGCACTAAATTTTACTTTA---AAGCTAC-TTTAAATTTAGATCA-CTTCATCTCAAA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25951243 277 +  26524999 -ATCTACTGATCAGGTGGGAGAAAGTGGAGACTTAACCTCTTTGACAGAATAACGTCGGGCCCAAAA----GGGCAGGAAAGCTGTTGTTTCCTGACCCAGA---------AGAGCT------------------C-AAAACGTT--A-CtgccccctctgaggttcgaactcaggaccttcagattatgagactgacgcgctgcctactgcgctaaggaggcAGGTGGCACAAGCGCTCTCAGCGCGAAGTATTCGCTGCGGATTTTACTTTTGCCCCAATTTAGTTCCTCCCCAGATTACCTTC-CTCTACA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790             99981 272 -    302817 GTAAGTCAA-TCAAGA-----AGAAAAACGACAGAATGTCCTTGA---------TTCACAGGCCAAG----TACTAT--GGACGGAGACAGGCTGAAC---T---------GCAGCT--TTTTGACAATGATGAGC-AAAACAA---GACtgccccctctgaggttcgaactcaggaccttcagattatgagactgacgcgctgcctactgcgctaaggaggcAGATGAAA-GCCAGCTTTTATCA-CATATATTTAACTCTGAATTTTACTTCGTTTTCCCGCC-TTTTATTTTCAGTCCTCGATGTGTTAAA
i dasNov3.JH561790         C 0 I 4

a score=1270997.000000
s hg38.chr6_GL000254v2_alt    219168 130 +   4827813 TTTCTAAAATAAAATATTCTTATGAAACTTCTC-AAAGCTCACCAGCTTCCAAAACCTGAATCAGAT--GAAGAAAGTCGCTGCTGATC----CCGCTGCTTTTGCCCCTCTTATTCTGAACTGATGACCCCCCACT
s panTro5.chr6              29206658 130 + 175400573 TTTCTAAAATAAAATATTCTTATGAAACTTCTC-AAAGCTCACCAGCTTCCAAAACCTGAATCAGAT--GAAGAAAGTCGCTGCTGATC----CCGCTGCTTTTGCCCCTCTTATTCTGAACTGATGACCCCCTACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29440657 130 + 173848474 TTTCTAAAATAAAATATTCTTATGAAACTTCTC-AAAGCTCACCAGCTTCCAAAACCTGAATCAGAT--GAAGAAAGTCGCTGCTGATC----CCGCTGCTTTTGCCCCTCTTATTCTGAACTGATGACCCCCTACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5241405 131 +   6154872 TTTCTAAAATAAAATATTCTTATGAAACTTCTCAAAAGCTCACCAGCTTCCAAAACCTGAATCAGAT--GAAGAAAGTCGCTGCTGATC----CCGCTGCTTTTGCCCCTCTTATTCTGAACTGATGACCCCCCACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74242975 131 + 122973662 TTTCTAAAATAAAATATTCTTATGAAACTTCTTAAAAGGTCAACAGCTTCGAAAACCTGAATCAGAT--GAAGAAAGTCGCTGCTGATC----CCGCTGCTTTTGCCCCTCTTATTCTGAACTGATGACCCCCCACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29419946 129 + 172585720 TTTATAAGATAAAATATTCTTATGAAACCTCTTAAAAGCTCAACAGCTCCCAAAACTTGAATCAGAT--GAAGAAAGTCGCTGCTGAT-----CCGCTGCTTTTGCCC-TCTTATTCTGAGCTGATGACTCCCCACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29081155 129 - 170955103 TTTATAAGATAAAATATTCTTATGAAACCTCTTAAAAGCTCAACAGCTCCCAAAACTTGAATCAGAT--GAAGAAAGTCGCTGCTGAT-----CCGCTGCTTTTGCCC-TCTTATTCTGAGCTGATGACTCCCCACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2070699 129 -   2996164 TTTATAAGATAAAATATTCTTATGAAACCTCTTAAAAGCTCAACAGCTCCCAAAACTTGAATCAGAT--GAAGAAAGTCGCTGCTGAT-----CCGCTGCTTTTGCCC-TCTTATTCTGAGCTGATGACTCCCCACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1933061 129 -   2157725 TTTCTAAGATAAAATATTCTTATGAAACCTCTTAAAAGCTCAACAGCTCCCAAAACTTGAATCAGAT--GAAGAAAGTCGCTGCTGAT-----CCGCTGCTTTTGCCC-TCTCATTCTGAGCTGATGACTCCCCACT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28376535 129 -  71996105 TTTCTAAGATAAAATATTCTTATGAAACCTCTTAAAAGCTCAACAGCTCCCAAAACTTGAATCAGAT--GAAGAAAGTCGCTGCTGAT-----TCGCTGCTTTTGCCC-TCTCATTCTGAGCTGATGACTCCCCACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2066596 129 +   2316924 TTTCTAAGATAAAATATTCTTATGAAACCTCTTAAAAGCTCAACAGCTCCCAAAACTTGAATCAGAT--GAAGAAAGTCGCTGCTGAT-----CCGCTGCTTTTGCCC-TCTCATTCTGAGCTGATGACTCCCCACT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1936661 130 -   3067355 TTTCTAAGATAAAATATTCTTATGAAACCTCTTAAAAGCTCAACAGCTTCCAAAACTTGAATCAGAT--CAAGAAAGTCGTTGCTGAT-----CTGCTGCTTTTGCCCGTCTCATTCTGAGCTGATGACTCCCCACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171464414 129 - 171630274 TTTCGAAAATGAAACATTCTTACTAAACCTCTTGAAAGCTCAACAGTTTCCAAAACCTGAATCAGAT--GAAGAAAGTCTCTGCGGATC----CCGCCGCTTTTGCCCCTCTCATTCTGAACTGATGA--CCCCGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            288840 129 -    375362 TTTCGAAAATAAAACATTCTTACGAAGCTTCTTGAAAGTTCAACAGTTTCCAAAACCTGAACCAGAT--GAGGAAAGTCTCTGCTGATC----CTGCCGCTTTTGCCGCTGTCATTCTGAACTGACGA--CCCCACT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      284566 129 -    373274 TTTTGAAAATAAAACATTCTTACGAAACTTCTTGAAAGCTCAACAGTTTCCATAACCTGAGTCAGAT--GAGGAAAGTCTCTGCTGATC----CTACCGCTTTTGCCGCTCTCATTCTGAACTGATGA--CCCCACT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      218096 129 -    285216 TTTCGAAAATAAAACACTCTTACGAAACTTCTTGACAGCTCAACAGTTTCCAAAACCTGAATCAGAT--GAAGAAAGTCTCTGTTGCTC----CTGCCGCTTTCGCCCCTCTCATTCTGAACTGATGA--CGCCACT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1592539 136 -   2232465 TTTCTAAATTGAAGTCCTCTTATGAAACGTTTTAAAAGTTCAACAGAGTCTAAAACCTTAATCAGATTGGAAAAAAGTCGTTATTAACCAACATTGCTACTTTTGTCC-CCTCTCTCTGAACTGATAGCCCCAGATT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25951520 114 +  26524999 CTTCAGAAATGAGATGCTCTCCTG----------------CAACGGCTCCTA-ACCCCGAGGCCGCT--GGAGAAAGTAGGCGTTGACG----CGACCGCCTCGGCTCCCCTGCGTCCAGGTTGACGACCTCGCCCT
i canFam3.chr35            C 0 I 857
e dasNov3.JH561790            100253   4 -    302817 I

a score=2195224.000000
s hg38.chr6_GL000254v2_alt    219298 240 +   4827813 TCTCACCTTAGGTGGAAAATTTCCAAAACGTCCTGTCCAGAAACCTGACAATTAACCTGCACGGGCGTCCATCCATTTTGTCTGGAGAGATCAGGAAAACGGCCTGTTTTT--------------CTCTCTCCCTCCATACCGGTTCTTTCCCGCAGGAAAAGTGATCCGGTGTTTCCCATCCGGAAGCATTGAAGCG-TTTACTATCTTAAACAACAAAACAATGTCCTTTG---ACAGGC---G-TCTCCACCTGTCGC--T
s panTro5.chr6              29206788 239 + 175400573 TCTCACCTTAGGTGGAAAATTTCCAAAACGTCCTGTCCAGAAACCTGACAATTAACCTGCACGGGCGTCCATCCATTTTGTCTGGAGAGATCAGGAAAACGGCCTG-TTTT--------------CTCTCTCCCTCCATACCGGTTCTTTCCCGCAGGAAAAGTGATCCGGTGTTTCCCATCCGGAAGCATTGAAGCG-TTTACTATCTTAAAAAACAAAACAATGTCCTTTG---ACAGGC---G-TCTCCACCTGTCGC--T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29440787 239 + 173848474 TCTCACCTTAGGTGGAAAATTTCCAAAACGTCCTGTCCAGAAACCTGACAATTAACCTGCACGGGCGTCCATCCATTTTGTCTGGAGAGATCAGGAAAACGGCCTG-TTTT--------------CTCTCTCCCTCCATACCGGTTCTTTCCCGCAGGAAAAGTGATCCGGTGTTTCCCATCCGGAAGCATTGAAGCG-TTTACTATCTTAAAAAACAAAACAATGTCCTTTG---ACAGGC---G-TCTCCACCTGTCGC--T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5241536 239 +   6154872 TCTCACCTTAGGTGGAAAATTTCCAAAACGTCCTGTCCAGAAACCTGACAGTTAACCTGCACGGGCGTCCATCCATTTTGTCTGGAGAGATCAGGAAAACGGCCTG-TTTT--------------CTCTCTCCCTCCATACCGGTTCTTTCCCGCAGGAAAAGTGATCCGGTGTTTCCCATCCGGAAGCATTGAAGCG-TTTACTATCTTAAACAACAAAACAATGTCCTTTG---ACAGGC---G-TCTCCACCTGTCGC--T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243106 239 + 122973662 TCTCACCTTAGGTGGAAAATTTCCAAAACGTCCTGTCCAGAAACCTGACACTTAACCTGCACGGCTGTCCATCCATTTCGTCTGGAGAGAACAGGAAACCAACCTG-TTTC--------------CTCTCTCCCTGCATACCGGTTCTTTCCCACAGGAAAAGTGATCCAGTGTTTCCCATTGGGAAGCATTAAAGCG-TTTACTGTCTTAAATAACAAAACAATGTCCTTTG---ACAGGC---G-TCTCCACCTGTCGC--T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29420075 239 + 172585720 TCTCACCCCAAGTAGAAAATTTCCTAAACGTCCTGTCCAGAAACCTGACACTTAACCTGCACGGGCGTCCATCCATTTTGTCTGGAGAGAACAGGAAACCAGCCTG-TTTC--------------CTCTCTCCCTCCATACCGGTTCTTTCCCACAGGAAAAGTGATCCAGTGTTTCCCATCGGGAAGCATTGAAGCT-TTTACTATCTTAAACAACAAAACAACCTCCTTTG---ACAGGC---G-TCTCCACCTGTCGC--T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29081284 239 - 170955103 TCTCACCTCAAGTAGAAAATTTCCTAAACGTCCTGTCCAGAAACCTGACACTTAACCTGCACGGGCGTCCATCCATTTTGTCTGGAGAGAACAGGAAACCAGCCTG-TTTC--------------CTCTCTCCCTCCATACCGGTTCTTTCCCACAGGAAAAGTGATCCAGTGTTTCCCATCGGGAAGCATTGAAGCT-TTTACTATCTTAAACAACAAAACAACCTCCTTTG---ACAGGC---G-TCTCCACCTGTCGC--T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2070828 239 -   2996164 TCTCACCTCAAGTAGAAAATTTCCTAAACGTCCTGTCCAGAAACCTGACACTTAACCTGCACGGGCGTCCATCCATTTTGTCTGGAGAGAACAGGAAACCAGCCTG-TTTC--------------CTCTCTCCCTCCATACCGGTTCTTTCCCACAGGAAAAGTGATCCAGTGTTTCCCATCGGGAAGCATTGAAGCT-TTTACTATCTTAAACAACAAAACAACCTCCTTTG---ACAGGC---G-TCTCCACCTGTCGC--T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1933190 239 -   2157725 TCTCACCTCAAGTAGAAAAATTCCTAAACGTCCTGTCCAGAAACCTAACACTTAACCTGCACGGGCGTCCATCCATTTTGTCTGGAGAGAACAGGAAACCAGCCTG-TTTC--------------CTCTCTCCCTCCATACCGGTTCTTTCCCACAGGAAAAGTGATCCAGTGTTTCCCATCGGGAAGCATTGAAGCT-TTTACTATCTTAAACAACAAAACAACCTCCTTTG---ACAGGC---G-TCTCCACCTGTCGC--T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28376664 239 -  71996105 TCTCATCTCAAGTAGAAAATTTCCTAAACGTCCTGTCCAGAAACCTGAGACTTAACCTGCACGGGCGTCCATCCATTTTGTCTGGAGAGAACAGGAAACCAGCCTG-TTTC--------------CTCTCTCCCTCCATACCGGTTCTTTCCCACAGGAAAAGTGATCCAGTGTTTCCCATCGGGAAGCATTGAAGCT-TTTACTATCTTAAACAACAAAACAACCTCCTTTG---ACAGGC---G-TCTCCACCTGTCGC--T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2066725 239 +   2316924 TCTCACCTCAAGTAGAAAATTTCCTAAACGTCCTGTCCAGAAACCTGACACTTAACCTGCACGGGCGTCCATCCATTTTGTCTGGAGGGAACAGGAAACCAGCCTG-TTTC--------------CTCTCTCCCTCCATACCAGTTCTTTCCCACAGGAAAAGTGATTCAGTGTTTCCCATCGGGAAGCATTGAAGCT-TTTACTATCTTAAACAACAAAACAACCTCCTTTG---ACAGGC---G-TCTCCACCTGTCGC--T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1936791 239 -   3067355 TCTCACCTCAAGTAGAAAATTTCCTAAACGTCCTGTCCAGAAACCTGACACTTAACCTGCACGGGTGTCCATCCATTTTGTCTGGTGAGAACAGGAAACCAGCCTG-TTTC--------------CTCTCTCCCTCCATACCGGTTCTTTCCCACAGGAAAAGTGATCCAGTGTTTCCCATCGGGAAGCATTGAAGCT-TTTACTATCTTAAACAACAAAACAACGTCCTTTG---ACAGGC---A-TCTCCACCTGTCGC--T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171464543 233 - 171630274 TCTCGCCTCTGGTAAAACGTTTCCTAAACCTCCTGTCTAGAAACCCGACACGTGGCCTGGGCGGGTGTCCATCCTTTT---CTCGATGGAGCAGGAAGCCAGCCCG-TTTC--------------CTCTCTCCCTCCGCACCGGGTCTTTCCCACGGGAAGAGTGATTCGGCGTCTCCCGTCGGGAAGCACTG-AGCG-TTTACGATCTTCAGCAAAAAAACAACGTCCTTTG---ACAGCC-----ATGCCCACTGTCGC---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            288969 235 -    375362 TCTCACCTCAGGTCAAACGTTTCCTAAACCTCCTGTCTGGAAACCTGACACGTCGCCTGCGCGCGTGTCCACCCTTTTTTCCTCGATGGAACAGGAAGCCAGCCAG-TTTC--------------CTCTCTCCCTCCGCACCGGGTCTTTCCCACGGGAAAAGTGATTCGGCGTCCCCCGTCGCGAAGCA--G-AGTG-TTTACTATCTTCAAC-AAAAACCAGCGTCCTTTG---ACAGAC---AGACACCACCTGTCGC---
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      284695 237 -    373274 TCTCACCTCAGGTGAAACATTTCCGAAACCTCCTGTCTAGAAACCTGACACGTCGCCTGCGAGGGTGTCCATCCTTTTTTTCTCGATGGAACAGGAAGCCAGCCTG-TTTC--------------CTCTCTCCCTCCGCACCAGGTCTTTCCCACGGGAAAAGTGATTCGGCGTCTCCCGTCGCGAGGCACTG-AGTG-TTTAGTATCTTCAAC-AAAAAACAACGTCTTTTG---ACATAC---A-TCTCCACCTGTCGCT--
i cebCap1.NW_016108108v1   C 0 I 14
s aotNan1.NW_018494050v1      218225 238 -    285216 TCTCACCTTAGGTGAAACATTTCCTAAACCTCCTGTCTAGAAACCTGGCACGTCGCCTGCGCGGGTGTCCATCCTTTTTTTCTCGATGGAACAGGAAGCCAGCCTG-TTTC--------------CTCTCTCCCTCCGCACCGGGTCTTTCCCACGGGAAAAATGATTCGGCGTCTCCCGTCGGGAAGCACTG-AGTG-TTTACTATCTTCAGCAAAAAAACAACGTCCTGTG---ACAGAC---A-TCGCCACCTGTCGT-T-
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1592675 205 -   2232465 T------------------TTACATAAACGTCCT------------------------------------ATCAATTTTGTCTCGATGGAACAAGAAACCAGACTG-CTTCCTCCCTCACTATTGCTCTCTCCCTCCACACCGAGTTTTTTCCATCGGGAGAGTGTTCAAGTGTTTCCCCT-AGGAAACATACAAGTGATTTAGTATCTTAAACAACAGAAAAATTTCCTTTGACCACAGCCCCAG-TGTCCACCTATCGC--T
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            100253   4 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I

a score=94909.000000
s hg38.chr6_GL000254v2_alt    219538 13 +   4827813 ATCTC-ATGTGCTC
s panTro5.chr6              29207027 13 + 175400573 ATCTC-ATGTGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441026 13 + 173848474 ATCTC-ATGTGCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5241775 13 +   6154872 ATCTC-ATGTGCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243345 13 + 122973662 ATCTC-AGGTGCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29420314 13 + 172585720 ATCTC-ATACGCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29081523 13 - 170955103 ATCTC-ATACGCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2071067 13 -   2996164 ATCTC-ATACGCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1933429 13 -   2157725 ATCTC-ATATGCTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28376903 13 -  71996105 ATCTC-ATATACTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2066964 13 +   2316924 ATCCC-ATACGCTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1937030 13 -   3067355 ATCTC-ATGTGCTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171464776 12 - 171630274 -CCTC-CTGTGCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            289204 12 -    375362 -TCTG-CTGCGCTC
i saiBol1.JH378348         C 0 I 3
s aotNan1.NW_018494050v1      218463 11 -    285216 --CTC-CTGTGCTC
i aotNan1.NW_018494050v1   C 0 I 3
s otoGar3.GL873742           1592880 14 -   2232465 CTCTCGATTTGCTC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            100253  4 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I
e cebCap1.NW_016108108v1      284932 14 -    373274 I

a score=19206.000000
s hg38.chr6_GL000254v2_alt    219551 4 +   4827813 AAAC--
s panTro5.chr6              29207040 4 + 175400573 AAAC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441039 4 + 173848474 AAAC--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5241788 4 +   6154872 AAAC--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243358 4 + 122973662 AAAC--
i nomLeu3.chr1a            C 0 I 3
s rheMac8.chr4              29420327 4 + 172585720 AAAC--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29081536 4 - 170955103 AAAC--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2071080 4 -   2996164 AAAC--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1933442 4 -   2157725 AAAC--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28376916 4 -  71996105 AAAC--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2066977 4 +   2316924 AAAC--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1937043 4 -   3067355 AAAC--
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1592894 4 -   2232465 --GCGC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            100253 4 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I
e saiBol1.JH378348            289216 3 -    375362 I
e aotNan1.NW_018494050v1      218474 3 -    285216 I
e cebCap1.NW_016108108v1      284932 14 -    373274 I
e calJac3.chr4             171464788 0 - 171630274 C

a score=10253.000000
s hg38.chr6_GL000254v2_alt    219555 3 +   4827813 GTC
s panTro5.chr6              29207044 3 + 175400573 GTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441043 3 + 173848474 GTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5241792 3 +   6154872 GTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29420331 3 + 172585720 TTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29081540 3 - 170955103 TTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2071084 3 -   2996164 TTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1933446 3 -   2157725 TTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28376920 3 -  71996105 TTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2066981 3 +   2316924 TTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1937047 3 -   3067355 TTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171464788 2 - 171630274 -CC
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            100253 4 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I
e saiBol1.JH378348            289216 3 -    375362 I
e otoGar3.GL873742           1592898 0 -   2232465 C
e aotNan1.NW_018494050v1      218474 3 -    285216 I
e cebCap1.NW_016108108v1      284932 14 -    373274 I
e nomLeu3.chr1a             74243362 3 + 122973662 I

a score=71379.000000
s hg38.chr6_GL000254v2_alt    219558 19 +   4827813 TTGTAAGGCCGTCTTAATG
s panTro5.chr6              29207047 19 + 175400573 TTGTAAGGCCGTCTTAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441046 19 + 173848474 TTGTAAGGCCGTCTTAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5241795 19 +   6154872 TTGTAAGGCCGTCTTAATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243365 19 + 122973662 TTGTAAGGCCGTCTTAATG
i nomLeu3.chr1a            I 3 C 0
s rheMac8.chr4              29420334 19 + 172585720 TTGTAAGGCTATCCTAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29081543 19 - 170955103 TTGTAAGGCTATCCTAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2071087 19 -   2996164 TTGTAAGGCTATCCTAATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1933449 15 -   2157725 TTGTAAGGCTATCCT----
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28376923 15 -  71996105 TTGTAAGGCTATCCT----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2066984 19 +   2316924 TTGTAAGGCTATCCTAATG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1937050 15 -   3067355 TTGTAAGGCTATCCT----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171464790  1 - 171630274 --------------T----
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            100253  4 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I
e saiBol1.JH378348            289216  3 -    375362 I
e otoGar3.GL873742           1592898  0 -   2232465 C
e aotNan1.NW_018494050v1      218474  3 -    285216 I
e cebCap1.NW_016108108v1      284932 14 -    373274 I

a score=73474.000000
s hg38.chr6_GL000254v2_alt    219577 10 +   4827813 TACAGCAAAC
s panTro5.chr6              29207066 10 + 175400573 TACAGCAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441065 10 + 173848474 TACAGCAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5241814 10 +   6154872 TACAGCAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243384 10 + 122973662 TACAGCAAAC
i nomLeu3.chr1a            C 0 T 32
s rheMac8.chr4              29420353 10 + 172585720 TACAGCAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29081562 10 - 170955103 TACAGCAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2071106 10 -   2996164 TACAGCAAAC
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     2067003 10 +   2316924 TACAGCAAAC
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171464791 10 - 171630274 TACAGCAAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            289219 10 -    375362 TACAGCAAAC
i saiBol1.JH378348         I 3 C 0
s cebCap1.NW_016108108v1      284946 10 -    373274 TACAACAAAC
i cebCap1.NW_016108108v1   I 14 C 0
s aotNan1.NW_018494050v1      218477 10 -    285216 TACGGCAAAC
i aotNan1.NW_018494050v1   I 3 C 0
s otoGar3.GL873742           1592898  6 -   2232465 ----ACGAAC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            100253  4 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I
e colAng1.NW_012115566v1     1937065  0 -   3067355 C
e chlSab2.chr17             28376938  0 -  71996105 C
e cerAty1.NW_012001495v1     1933464  0 -   2157725 C

a score=90230.000000
s hg38.chr6_GL000254v2_alt    219587 18 +   4827813 TTCTTGTAAGGCCGTCTT
s panTro5.chr6              29207076 18 + 175400573 TTCTTGTAAGGCCGTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441075 18 + 173848474 TTCTTGTAAGGCCGTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5241824 18 +   6154872 TTCTTGTAAGGCCGTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243362 18 + 122973662 TTGTTGTAAGGCCGTCTT
i nomLeu3.chr1a            T 32 C 0
s rheMac8.chr4              29420363 18 + 172585720 TTCTTGTAAGGCCGCCTG
i rheMac8.chr4             C 0 I 16
s macFas5.chr4              29081572 18 - 170955103 TTCTTGTAAGGCCGCCTG
i macFas5.chr4             C 0 I 7
s macNem1.NW_012011356v1     2071116 18 -   2996164 TTCTTGTAAGGCCGCCTG
i macNem1.NW_012011356v1   C 0 I 16
s manLeu1.NW_012104165v1     2067013 18 +   2316924 TTCTTGTAAGGCCGTCTG
i manLeu1.NW_012104165v1   C 0 I 16
s calJac3.chr4             171464801 13 - 171630274 TTCTTGTAAGGCC-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            289229 13 -    375362 TTCTTGTAAGGCC-----
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      284956 13 -    373274 TTCTTGTAAGGCT-----
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      218487 13 -    285216 TTCTTGTAAGGCC-----
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1592904 16 -   2232465 TTCTTACAGGGCCGTC--
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            100253  4 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I
e colAng1.NW_012115566v1     1937065  0 -   3067355 C
e chlSab2.chr17             28376938  0 -  71996105 C
e cerAty1.NW_012001495v1     1933464  0 -   2157725 C

a score=21611.000000
s hg38.chr6_GL000254v2_alt    219605 8 +   4827813 AATGTACA
s panTro5.chr6              29207094 8 + 175400573 AATGTACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441093 8 + 173848474 AATGTACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5241842 8 +   6154872 AATGTACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243380 8 + 122973662 AATGTACA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29081597 8 - 170955103 AAAATACC
i macFas5.chr4             I 7 I 1
s cerAty1.NW_012001495v1     1933464 8 -   2157725 AATGTACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28376938 8 -  71996105 AATGTACA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     1937065 8 -   3067355 AACGTACA
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            100253 4 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I
e saiBol1.JH378348            289242 0 -    375362 C
e otoGar3.GL873742           1592920 0 -   2232465 C
e aotNan1.NW_018494050v1      218500 0 -    285216 C
e cebCap1.NW_016108108v1      284969 0 -    373274 C
e calJac3.chr4             171464814 0 - 171630274 C
e manLeu1.NW_012104165v1     2067031 16 +   2316924 I
e macNem1.NW_012011356v1     2071134 16 -   2996164 I
e rheMac8.chr4              29420381 16 + 172585720 I

a score=148094.000000
s hg38.chr6_GL000254v2_alt    219613 28 +   4827813 GCAAACTCCTTGTAAGGCCGTCTG-TTTT
s panTro5.chr6              29207102 28 + 175400573 GCAAACTCCTTGTAAGGCCGTCTG-TTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441101 28 + 173848474 GCAAACTCCTTGTAAGGCCGTCTG-TTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5241850 29 +   6154872 GCAAACTCCTTGTAAGGCCGTCTGTTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243388 28 + 122973662 GCAAACTTCTTGTAAGGCCGTCTG-TTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29420397 28 + 172585720 CCCAACTTCTTGTAAGGCCGTCTG-TTTT
i rheMac8.chr4             I 16 C 0
s macFas5.chr4              29081606 28 - 170955103 CCCAACTTCTTGTAAGGCCGTCTG-TTTT
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     2071150 28 -   2996164 CCCAACTTCTTGTAAGGCCGTCTG-TTTT
i macNem1.NW_012011356v1   I 16 C 0
s cerAty1.NW_012001495v1     1933472 28 -   2157725 GCAAACTTCTTGTAAGGCCGTCTG-TTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28376946 28 -  71996105 GCAAACTTCTTGTAAGGCCGTCTG-TTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2067047 28 +   2316924 CCCAACTTCTTGTAAGGCCGTCTG-TTTT
i manLeu1.NW_012104165v1   I 16 C 0
s colAng1.NW_012115566v1     1937073 28 -   3067355 GCAAACTTCTTGTAAGGCCGTCTA-TTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171464814  8 - 171630274 --------------------TCTG-CTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            289242  8 -    375362 --------------------TCTG-CTTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      284969  8 -    373274 --------------------TCTG-CTTA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      218500  8 -    285216 --------------------TCTG-CTTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1592920 11 -   2232465 -----------------CCTCTGG-TTTT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            100253  4 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I

a score=155230.000000
s hg38.chr6_GL000254v2_alt    219641 16 +   4827813 ------AAAAAAATACCTCCCT---
s panTro5.chr6              29207130 16 + 175400573 ------AAAAAAATACCTCCCT---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441129 16 + 173848474 ------AAAAAAATACCTCCCT---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5241879 16 +   6154872 ------AAAAAAAAACCTCCCT---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243416 16 + 122973662 ------AATAAAATACCTCCCT---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29420425 16 + 172585720 ------AAGAAAATACCTCCCC---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29081634 16 - 170955103 ------AAGAAAATACCTCCCC---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2071178 16 -   2996164 ------AAGAAAATACCTCCCC---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1933500 16 -   2157725 ------AAGAAAATATCTCCCC---
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28376974 16 -  71996105 ------AAGAAAATACCTCCCC---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2067075 16 +   2316924 ------AAGAAAATACCTCCCG---
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1937101 16 -   3067355 ------AAGAAAATACCTTCCC---
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171464822 16 - 171630274 ------AAGAAAACATCTCCct---
i calJac3.chr4             C 0 I 300
s saiBol1.JH378348            289250 16 -    375362 ------AAGAAAACACCTCTCC---
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      284977 16 -    373274 ------AAGAAAACACCTCCCC---
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      218508 16 -    285216 ------AAGAAAACACCTCCCC---
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1592931 16 -   2232465 ------TAGAAAACGCCTTTCC---
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790            100257 25 -    302817 AAAAAAATGCAAACACCTGCTCCGT
i dasNov3.JH561790         I 4 C 0
e canFam3.chr35             25951634 857 +  26524999 I

a score=1227907.000000
s hg38.chr6_GL000254v2_alt    219657 111 +   4827813 AAGTCCCACTGGCTTTTCAACCCACTGCAGTCTTCCCCAATCACGTCTCCGTCTCGGTCTTGAGGAAGTCCAAAG--GGATTT-GGACAAATGCAACTTCATGGGGTAAAGAAT-
s panTro5.chr6              29207146 111 + 175400573 AAGTCCCACTGGCTTTTCAACCCACTGCAGTCTTCCCCGATCACGTCTCCATCTCGGTCTTGAGGAAGTCCAAAG--GGATTT-GGACAAATGCGACTTCATGGGGTAAAGAAT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441145 111 + 173848474 AAGTCCCACTGGCTTTTCAACCCACTGCAGTCTTCCCTGATCACGTCTCCATCTCGGTCTTGAGGAAGTCCAAAG--GGATTT-GGACAAATGCGACTTCATGGGGTAAAGAAT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5241895 111 +   6154872 AAGTCCCACTGGCTTTTCAACCCACTGCAGTCTTCCCCGATCACGTCTCCGTCTCGGTCTTGAGGAAGTCCAAAG--GGATTT-GGACAAATGCAACTTCATGGTGTAAAGAAT-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243432 111 + 122973662 AAGTCCCACTGGCTTTTCAACCCACTGCAATCTTCCCCGATCACGCCTCCGTCTCGGTCTTGAGGAAGTCCAAAG--GGATTT-GGACAAATGCAACTTCCTGGTGTAAAGAAT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29420441 111 + 172585720 AAGTCCCATTGGCTTTTCAACCCACTGCAGTCTTCCCCGATCACGCCTCCTTCTCGGTCTTGAGGAAGTCCAAAG--GGATTT-GGACAAATGCAACTTCATGGTGTAAAGAAT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29081650 111 - 170955103 AAGTCCCATTGGCTTTTCAACCCACTGCAGTCTTCCCCGATCACGCCTCCTTCTCGGTCTTGAGGAAGTCCAAAG--GGATTT-GGACAAATGCAACTTCATGGTGTAAAGAAT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2071194 111 -   2996164 AAGTCCCATTGGCTTTTCAACCCACTGCAGTCTTCCCCGATCACGCCTCCTTCTCGGTCTTGAGGAAGTCCAAAG--GGATTT-GGACAAATGCAACCTCATGGTGTAAAGAAT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1933516 111 -   2157725 AAGTCCCATTGACTTTTCAACCCACTGCAATCTTCCCCCATCACGCCTCCGTCTCGGTCTTGAGGAAGTCCAAAG--GGATTT-GGACAAATGCAACTTCATGGTGTAAAGAAT-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28376990 111 -  71996105 AAGTCCCATTGACTTTTCAACCCACTGCAATCTTCCCCGATCACGCCTCCGTCTCGGTCTTGAGGAAGTCCAAAG--GGATTT-GGACAAATGCAACTTCATGGTGTAAAGAAT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2067091 111 +   2316924 AAGTCCCATTGGCTTTTCAACCCACTGCAGTCTTCCCCAATCACGCCTCCTTCTCGGTCTTGAGGAAGTCCAAAG--GGATTT-GGACAAATGCAACTTCATGGTGTAAAGAAT-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1937117 111 -   3067355 AAGTCCCACTGGCTTTTCAACCCACTGCAATCTTCCCCAATCACGCCTCCGTCTCGGTCTTGAAGAAGTCCAAAG--GGATTT-GGACGAATGCAACTTCATGGTGTAAAGAAT-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171465138 111 - 171630274 AGGTCCCACCGGCTTTTCCACCCACTGCAGTCTTCCCCGATCACGCCTCCGTCTCTGTCTTGAGCAAGTCCAAAG--GGATTT-GGACAAATGTAACTTCATGTTGTGAAGAAT-
i calJac3.chr4             I 300 C 0
s saiBol1.JH378348            289266 111 -    375362 AGGTCTCACTGGCTTTTCCACCCGCTGCAATCGTCCCCGATCACGCCTCGGTCTGTGCCTTGAGCAAGTCCAGAG--GGATTT-GGACAAAGGTAACTTCATGGTGTGAAGAAT-
i saiBol1.JH378348         C 0 I 32330
s cebCap1.NW_016108108v1      284993 111 -    373274 AGGTCCCACTGGCTTTTCCACCCGCTGCAATCGTCCCCGATCACGCCTCCGTCTCTGTCTTGAGCAAGTCCAAAG--GGATTT-GGACAAATGTAACTTCATGGTGTGAAGAAT-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      218524 111 -    285216 AGGTCCCACTGGCTTTTCCACCCGCTGCAGTCTTCCCCAGTCACGCCTCCGTCTCTGTCTTGAGCAAGTCCAAAG--GGATTT-GGACAAATGTAACTTCATGGTGTGAAGAAC-
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1592947 108 -   2232465 AAGTCCCCCTGGCTTTTCAACCCACTGCACTCTCGCCGGATCACTCCTC------GGTCTCCAGGAAGTCCAAAGAAGGATCCGGGATATAAGACACTCAGTGGTTTAAAGATT-
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790            100282 106 -    302817 AAATCGCACCGGCTTCTCAACCCGCTACAGTCTTTCAGGATCACTCCTGCGTCAC------GAGGACGCCCAAGG--CGGTCC-CCGGACAGGCAAGTGGGTGGTTCCAAGGAAT
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25951634 857 +  26524999 I

a score=1161074.000000
s hg38.chr6_GL000254v2_alt    219768 129 +   4827813 ATGGCGCTCTTGGTGCAAACTCTTGGGCATC-TGCTA------GGATGTGAGAACGGTAGTAAT---AGCAGGAAGGGGTGAAAAGCTTGTCTTCTCCACTgtctttgtttgccaggggattgtctggagtttagcact
s panTro5.chr6              29207257 129 + 175400573 ATGGCGCTCTTGGTGCAAACTCTTGGGCATC-TGCTA------GGATGTGAGAGCGGTAGTAAT---AGCAGGAAGGGGTGAAAAGCTTGTCTTCTCCACTgtctttgtttgccaggggattgtctggggtttagcact
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441256 129 + 173848474 ATGGCGCTCTTGGTGCAAACTCTTGGGCATC-TGCTA------GGATGTGAGAGCGGTAGTAAT---AGCAGGAAGGGGTGAAAAGCTTGTCTTCTCCACTgtctttgtttgccaggggattgtctggggtttagcact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5242006 129 +   6154872 ATGGCGCTCTTGGTGCAAACTCTTGGGCATC-TGCTA------GGATGTGAGAGCGGTAGTAAT---AGCAGGAAGGGGTGAAAAGCTTGTCTTCTCCACTgtctttgtttgccaggggattgtctggggtttagcact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243543 129 + 122973662 ATGGCGCTCTTGGTGCAAACTCTTGGGCATC-TGCTA------GGATGTGAGAGCGGTAGTAAT---AGCAGGAAGGGGTGAAAAGCTTGTCTTCTCCACTGTCTTTGTTTGCCAGGGGATTGTCTGGGGTTTAACGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29420552 130 + 172585720 ATGGCGCTCTTGGTGCAAACTCTTGGGCATC-TGCTA------GGATGTGAGAGCGGTCGTAATA--AGCAGGAAGGGGTGAAAAGCTTATCTTCTCCACTGACTTTgtttgccaggggattatccgaggtttagcact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29081761 130 - 170955103 ATGGCGCTCTTGGTGCAAACTCTTGGGCATC-TGCTA------GGATGTGAGAGCGGTCGTAATA--AGCAGGAAGGGGTGAAAAGCTTATCTTCTCCACTGACTTTgtttgccaggggattatccgaggtttagcact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2071305 130 -   2996164 ATGGCGCTCTTGGTGCAAACTCTTGGGCATC-TGCTA------GGATGTGAGAGCGGTCGTAATA--AGCAGGAAGGGGTGAAAAGCTTATCTTCTCCACTGACTTTGTTTGCCAGGGGATTATCCGAGGGTTAGCACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1933627 130 -   2157725 ATGGCGCTCTTGGTGCAAACTCTTGAGCATC-TGCTA------GGATGTGAGAGCGGTCGTAATA--AGCAGGAAGGGGTGAAAAGCTGATCTTCTCCACTGACTTTgtttgccaggggattatctgaggtttagcact
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28377101 126 -  71996105 ATGGCGCTCTTGGTGCAAACTCTTGGGCATC-TGCTA------GGATGTGAGAGCGGTCGTAATA--AGCAGGAAGGGGTGAAAAGCTTATCTTCTCCACTGAC----tttgccaggggattatctgaggtttagcact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2067202 130 +   2316924 ATGGCGCTCTTGGTGCAAACTCTTGGGTATC-TGCTA------GGATGTGAGAGCGGTCGTAATA--AGCAGGAAGGGGTGAAAAGCTTATCTTCTCCCCTGACTTTgtttgccaggggattatctgaggtttagcact
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1937228 130 -   3067355 ATGGAGCTCTTGGTGCAAACTCTTGGGCATC-TGCTA------GGATGTGAGAACGGTAGTAATA--AGCAGGAAGGGGTGAAAAGCTTATCTTCTCCACTGACTTTgtttgccaggggattgtctgaggtttagcact
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171465249 128 - 171630274 TCGGTGCTCTTGGTCCAAACTTTTGGCCGTC-TGCTA------GGACGTGAGAGCGGTAGAAAA---AGCGGAAAGGGCTGAAAAGCTTGTCTTCTCCACTGTTTTTGTTCGCCAGGGGATTGTCTGGGTTTTAG-ACC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      285104 128 -    373274 TCGGTGCTCTTGGTGCAAACTTTTGGCCGTC-TGCTG------GGACATGAGAGTGGTAGAAAT---AGCAGGAAGGGTTGAAAAGCTTGTCTTCTCCACTGTCTTTGTTCACCAGGGGATTGTCTGGGTTTTAG-ACC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      218635 124 -    285216 TCGGTGCTCTTGGTGCAAACTTTTGGCCGTC-TGCTA------GGAGGTGAGAGTGGTAGAAAA---AGCAGGAAGGGCTGACAAGCTTGTCTTCTCCACTGTCTTTGTTCGCCAGGGGAT----TGGGTTTTAG-ACC
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1593055 138 -   2232465 AAAGTGCTCTTGGTGCAAACTCTCGAGGTTC-TGCTAGTACGCGTATGTGAGAGTGATAGTAATACGAGCAGAAAGAGGTAAAAAAGCTGGTTTATCTTCCGTCTTGGTTCTCCGGAGCATTGTCCAGGTTTTAGCGCT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790            100388 101 -    302817 TAGGAGATCTCGGTGCAAACTCGTGGGCGTAGCGCTG------GGCCC-------------------AGCAGCGAGAGGGGAAGA--CAGGTTTTCCCTCTGTCTT-----------AGGCTGTCCGGGTTTTAGCACT
i dasNov3.JH561790         C 0 I 186
e canFam3.chr35             25951634 857 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I

a score=1371520.000000
s hg38.chr6_GL000254v2_alt    219897 156 +   4827813 caaagacccacttcccaggaaaaccctACCTGGGATGTGAAAAGTCCGGGCTTTCGGTTTTTGGCGAT---AGGTTGGAGAGAATATATACACACAAAA-------AGTGACAACCCCATCCTTGTTCCCACCCCTGCCCCAGGGCCG-AAAGCAACACTGA------------------TTTTA----
s panTro5.chr6              29207386 156 + 175400573 caaagacccacttcccaggaaaaccctACCTGGGATGTGAAAAGTCCGGGCTTTCGGTTTTTGGCGAT---AGGTTGGAGAGAATATATACACACAAAA-------AGTGACAACCCCATCCTTGTTCCCACCCCTGCCCCAGTGCCG-AAAGCAACACTGA------------------TTTTA----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441385 156 + 173848474 caaagacccacttcccaggaaaaccctACCTGGGATGTGAAAAGTCCGGGCTTTCGGTTTTTGGCGAT---AGGTTGGAGAGAATATATACACACAAAA-------AGTGACAACCCCATCCTTGTTCCCACCCCTGCCCCAGGGCCG-AAAGCAACACTGA------------------TTTTA----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5242135 156 +   6154872 caaagacccacttcccaggaaaaccctACCTGGGATGTGAAAAGTCCGGGCTTTCGGTTTTTGGCGAT---AGGTTGGAGAGAATATATACACACAAAA-------AGTGACAACCCCATCCTTGTTCCCACCCCTGCCCTAGGGCCG-AAAGCAACACTGA------------------TTTTA----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243672 156 + 122973662 CAAAGACCCACCTCCCAGGAAAACCCTACCTGGGATGTGAAAAGTCCGGGCTTTCGGTTTTTGGCGCT---AGGTTGGAGAGAATATATACACACAAAA-------AGTGACAACCCCATCCTTGTTCCCACCCCTGCCCCAGGGCTG-AAAGCAACACTGA------------------TTTTA----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29420682 156 + 172585720 caaagacccacctcccaggaaaaccctACCTGGGATGTGAAAAGTCTGGGCTTTCGGTTTTTGGCGAT---AGGTTGGAGAGATTACACACACACAAAA-------AGTGACAACCCCACCCTTGTTCCCACCCCTGCCCCAGGACTG-AAAGTAACACTGA------------------TTTTA----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29081891 156 - 170955103 caaagacccacctcccaggaaaaccctACCTGGGATGTGAAAAGTCTGGGCTTTCGGTTTTTGGCGAT---AGGTTGGAGAGATTACACACACACAAAA-------AGTGACAACCCCACCCTTGTTCCCACCCCTGCCCCAGGACTG-AAAGTAACACTGA------------------TTTTA----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2071435 156 -   2996164 CAAAGACCCACCTCCCAGGAAAACCCTACCTGGGATGTGAAAAGTCTGGGCTTTCGGTTTTTGGCGAT---AGGTTGGAGAGATTACACACACACAAAA-------AGTGACAACCCCACCCTTGTTCCCACCCCTGCCCAAGGACTG-AAAGTAACACTGA------------------TTTTA----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1933757 156 -   2157725 caaagacccacctcccaggaaaaccctACCTGGGATGTGAAAAGTCTGGGCTTTCGGTTTTTGGCGAT---AGGTTGGAGAGATTACACACACACAAAA-------AGTGACAACCCCACCCTTGTTCCCACCCCTGCCCCAGGACTG-AAAGTAACACTGA------------------TTTTA----
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28377227 156 -  71996105 caaagacccacctcccaggaaaaccctACCTGGGATGTGAAAAGTCTGGGCTTTCGGTTTTTGGCGAT---AGGTTGGAGAGATTACACACACACAAAA-------ATTGACAACCCCACCCTTGTTCCCACCCCTGCCCCAGGACTG-AAAGTAACACTGA------------------TTTTA----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2067332 156 +   2316924 caaagacccacctcccaggaaaaccctACCTGGGATGTGAAAAGTCTGGGCTTTCGGTTTTTGGCGAT---AGGTTGGAGAGATTACACACACACAAAA-------AGTGACAACCCCACCCTTGTTCCCACCCCTGCCCCAGGACTG-AAAGTAACACTGA------------------TTTTA----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1937358 156 -   3067355 caaagacccacctcccaggaaaaccctACCTGGGATGTGAAAAGTCTGGGCTTTCGGTTTTTGGCGAT---AGGTTGGAGAGATTACACACACACAAAA-------AGTGACAACCCCACCCTTGTTCCCACCCCTGCCCCAGGACTG-AAAGTAACACTGA------------------TTTTA----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171465377 147 - 171630274 CAGAGACC-------CAGGAAAAGCGT-CCTGGGATGTGAAAAGTCTGGGCTTCCGGTTTTTGGCGAT---CTGTTGGAGAGAAGAAACACACACAAAA-------AGTGACACCCTCACCCTTGTTCCCACCCC-GCCTCAGAGCCG-AAAGCAACGCTGA------------------TTTTA----
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      285232 154 -    373274 CAAAGACCCACCCCACAGGAAAACCCC-CCTGGGATGTGAAAAGTCTGGGCTTCTGGCTTTTGGCGAT---CGGTTGGGGAGAATAAACACACGCAAAA-------AGTGACACCCTCACCCTTGTTCCCACCCC-GCTGCAGGGCTG-AAAGCAACGCTGA------------------TTTTA----
i cebCap1.NW_016108108v1   C 0 I 5
s aotNan1.NW_018494050v1      218759 154 -    285216 CAAAGACCCACCTCCCAGGAAAACCGT-CCTGGGATGTGAAAAGTCTGGGCTTCCGGTTTTTGGCGAT---CGGTTGGAGAGAAAAAACACACACAAAA-------CGTGACACCCTCACCCTTGTTCCCACCCC-GCCGCAGGGCTG-AAAGCAACGCTGA------------------TTTTA----
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1593193 177 -   2232465 CAAA------TTTCCCAGGAAGTTTTT-CGTGGGATGGGAAAAGTCCAGTTTTTCGAGCTATGGGGGTGGAAGGTTGGAAAA-----ATACAAAAAAAAGGGGGGGGGGGAGAGTTCCATCTCCTACCCTACCTCCACCCAGAGCTTGTAATGAAACACTGATTATTTATTTCTTTATTTTTTTACTGA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            100489 186 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I

a score=16562.000000
s hg38.chr6_GL000254v2_alt    220053 2 +   4827813 TT
s panTro5.chr6              29207542 2 + 175400573 TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441541 2 + 173848474 TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5242291 2 +   6154872 TT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243828 2 + 122973662 TT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29420838 2 + 172585720 TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29082047 2 - 170955103 TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2071591 2 -   2996164 TT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1933913 2 -   2157725 TT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28377383 2 -  71996105 TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2067488 2 +   2316924 TT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1937514 2 -   3067355 TT
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018494050v1      218913 2 -    285216 TT
i aotNan1.NW_018494050v1   C 0 I 6
s otoGar3.GL873742           1593370 2 -   2232465 TT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            100489 186 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e cebCap1.NW_016108108v1      285386 5 -    373274 I
e calJac3.chr4             171465524 0 - 171630274 C

a score=133634.000000
s hg38.chr6_GL000254v2_alt    220055 23 +   4827813 GCCAATGGATAATAGGGTTTAGG-
s panTro5.chr6              29207544 23 + 175400573 GCCAATGGATAATAGGGTTTAGG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441543 23 + 173848474 GCCAATGGATAATAGGGTTTAGG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5242293 23 +   6154872 GCCAATGGATAATAGGGCTTAGG-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243830 23 + 122973662 GCCAATGGATATCAGGGCTTAGG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29420840 23 + 172585720 GTCAATGGATAATAGGGCTTAGG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29082049 23 - 170955103 GTCAATGGATAATAGGGCTTAGG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2071593 23 -   2996164 GCCAATGGATGATAGGGCTTAGG-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1933915 23 -   2157725 GCCAATGGATAATAGGGCTTAGG-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28377385 23 -  71996105 GGCAATGGATAATAGGGCTTAGG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2067490 23 +   2316924 GCCAATGGATAATAGGGCTTAGG-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1937516 23 -   3067355 GCCAATGGATAATAGGGCTTAAG-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171465524  5 - 171630274 ------------------TTAGA-
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1593372 21 -   2232465 GTCAATGGAT---AGGGCTTAGCA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            100489 186 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e aotNan1.NW_018494050v1      218915  6 -    285216 I
e cebCap1.NW_016108108v1      285386  5 -    373274 I

a score=246000.000000
s hg38.chr6_GL000254v2_alt    220078 31 +   4827813 TTATCCCACTTTTGTAGTTGTC--GCCGTTTTT
s panTro5.chr6              29207567 31 + 175400573 TTATCCCCCTTTTGTAGTTGTC--GCCGTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441566 31 + 173848474 TTATCCCCCTTTTGTAGTTGTC--GCCGTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5242316 31 +   6154872 TTATCCCACTTTTGTAGTTGTC--GCCGTTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243853 28 + 122973662 TTATCCCACTTTTGTAGTT-----GCCGTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29420863 31 + 172585720 TTATCCCACTTTTGTAGTTGTG--GCCGTTTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29082072 31 - 170955103 TTATCCCACTTTTGTAGTTGTG--GCCGTTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2071616 31 -   2996164 TTATCCCACTTTTGTAGTTGTG--GCCGTTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1933938 31 -   2157725 TTATCCCACTTTTGTAGTTGTG--GCCGTTTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28377408 31 -  71996105 TTATCCCACTTTTGTAGTTGTG--GCCGTTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2067513 31 +   2316924 TTATCCCACTTTTGTAGTTGTG--GCCGTTTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1937539 31 -   3067355 TTATCCCACTTTTGTAGTTGTG--GCCGTTTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171465529 31 - 171630274 TTATCCCACTTTTGTAGTTGTC--GCTGTTTTT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      285391 31 -    373274 TTATCCCACTTTTGTAGTTGTC--GCTGCTTTT
i cebCap1.NW_016108108v1   I 5 C 0
s otoGar3.GL873742           1593393 26 -   2232465 TTATC-------TGTAGTTGTGCCGCTGTTTCT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            100489 186 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e aotNan1.NW_018494050v1      218915  6 -    285216 I

a score=252506.000000
s hg38.chr6_GL000254v2_alt    220109 25 +   4827813 CCCCTGTCCGCTGATGGTGACAACC
s panTro5.chr6              29207598 25 + 175400573 CCCCTGTCCGCTGATGGTGACAACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441597 25 + 173848474 CCCCTGTCCGCTGATGGTGACAACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5242347 25 +   6154872 CCCCTGTCCGCTGATGGTGACAACC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243881 25 + 122973662 CCCCTTTCCGCTGATGGTGACAACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29420894 25 + 172585720 CCCCTGGCCCCTGATGGTGACAACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29082103 25 - 170955103 CCCCTGGCCCCTGATGGTGACAACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2071647 25 -   2996164 CCCCTGGCCCCTGATGGTGACAACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1933969 25 -   2157725 CCCCTGGCCGCTGATGGTGACAACC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28377439 25 -  71996105 CCCCTGGCCGCTGATGGTGACAACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2067544 25 +   2316924 CCCCTGGCCGCTGATGGTGACAACC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1937570 25 -   3067355 CCCCTGGCCGCTGATGGTGACAACC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171465560 25 - 171630274 CCTCTGGCCGCTGATGGTGACAACC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      285422 25 -    373274 CCCCTGGCCACCGATGGTGACAATC
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      218921 25 -    285216 CCCCTGGCCGCTGATGGTGACAACC
i aotNan1.NW_018494050v1   I 6 C 0
s otoGar3.GL873742           1593419 24 -   2232465 -CCTTGGCCGCTGATGATGGCAACC
i otoGar3.GL873742         C 0 I 20
e dasNov3.JH561790            100489 186 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I

a score=19110.000000
s hg38.chr6_GL000254v2_alt    220134 2 +   4827813 TT
s panTro5.chr6              29207623 2 + 175400573 TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441622 2 + 173848474 TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5242372 2 +   6154872 TT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243906 2 + 122973662 TT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29420919 2 + 172585720 TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29082128 2 - 170955103 TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2071672 2 -   2996164 TT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1933994 2 -   2157725 TT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28377464 2 -  71996105 TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2067569 2 +   2316924 TT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1937595 2 -   3067355 TT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171465585 2 - 171630274 TT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016108108v1      285447 2 -    373274 TT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      218946 2 -    285216 TT
i aotNan1.NW_018494050v1   C 0 I 29
e dasNov3.JH561790            100489 186 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1593443 20 -   2232465 I

a score=7397.000000
s hg38.chr6_GL000254v2_alt    220136 1 +   4827813 G
s panTro5.chr6              29207625 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441624 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5242374 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243908 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29420921 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29082130 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2071674 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1933996 1 -   2157725 G
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28377466 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2067571 1 +   2316924 G
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1937597 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171465587 1 - 171630274 A
i calJac3.chr4             C 0 I 12
s cebCap1.NW_016108108v1      285449 1 -    373274 G
i cebCap1.NW_016108108v1   C 0 I 31
e dasNov3.JH561790            100489 186 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1593443 20 -   2232465 I
e aotNan1.NW_018494050v1      218948 29 -    285216 I

a score=-3942.000000
s hg38.chr6_GL000254v2_alt    220137  2 +   4827813 -CA-------------
s panTro5.chr6              29207626  2 + 175400573 -CA-------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441625  2 + 173848474 -CA-------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5242375  2 +   6154872 -CA-------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243909  2 + 122973662 -CA-------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29420922  2 + 172585720 -GA-------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29082131  2 - 170955103 -GA-------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2071675  2 -   2996164 -GA-------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1933997  2 -   2157725 -GA-------------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28377467  2 -  71996105 -GA-------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2067572  2 +   2316924 -GA-------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1937598  2 -   3067355 -GA-------------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171465600 16 - 171630274 CGATAAGGGGCCCTGG
i calJac3.chr4             I 12 C 0
e dasNov3.JH561790            100489 186 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1593443 20 -   2232465 I
e aotNan1.NW_018494050v1      218948 29 -    285216 I
e cebCap1.NW_016108108v1      285450 31 -    373274 I

a score=25597.000000
s hg38.chr6_GL000254v2_alt    220139 3 +   4827813 CCG
s panTro5.chr6              29207628 3 + 175400573 CCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441627 3 + 173848474 CCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5242377 3 +   6154872 CCG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243911 3 + 122973662 CCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29420924 3 + 172585720 CCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29082133 3 - 170955103 CCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2071677 3 -   2996164 CCG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1933999 3 -   2157725 CCG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28377469 3 -  71996105 CCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2067574 3 +   2316924 CCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1937600 3 -   3067355 CCG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171465616 3 - 171630274 CCG
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018494050v1      218977 3 -    285216 CCG
i aotNan1.NW_018494050v1   I 29 C 0
e dasNov3.JH561790            100489 186 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1593443 20 -   2232465 I
e cebCap1.NW_016108108v1      285450 31 -    373274 I

a score=930897.000000
s hg38.chr6_GL000254v2_alt    220142 115 +   4827813 TGCATCGCTCTGAGTGAGGCGACTTAAATGCGCGATGTTACCGTTTTCAGCCGTGACCGTAGCACTCGGTCTTTGACTGTAG-----------------------------------------ACTGTTGTGTCTACATAGTGCTAGTTTG--------TATTG
s panTro5.chr6              29207631 115 + 175400573 TGCATCGCTCTGAGTGAGGCGACTTAAATGCGCGATGTTAGCGTTTTCAGCCGTGACCGTAGCACTCGGTCTTTGACTGTAG-----------------------------------------ACTGTTGTGTCTACATAGTGCTAGTTTG--------TATTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441630 115 + 173848474 TGCATCGCTCTGAGTGAGGCGACTTAAATGCGCGATGTTAGCGTTTTCAGCCGTGACCGTAGCACTCGGTCTTTGACTGTAG-----------------------------------------ACTGTTGTGTCTACATAGTGCTAGTTTG--------TACTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5242380 115 +   6154872 TGCACCGCTCTGAGTGAGGCGACTTAAATGCGCGATGTTAGCGTTTTCAGCCGTGACCGTAGCACTCGGTCTTTGACTGTAG-----------------------------------------ACTGTTGTGTCTACATAGTGCTAGTTTG--------TATTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74243914 164 + 122973662 TGCATCGCTCTGAGTGAGGCGACCTAAATGCGCGATGTTAGCGTTTTCAGCCGTGAGCGTAACACTCGGTCTTTGACTGTAGTGATCCTTGACTCTCTATGATCCGACGGCTTATCAATCAAAATGGTTGTGTCTACATAGTGCTAGTTTGTATTGAGATATTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29420927 123 + 172585720 TGCATCTCTCTGAGTGAGGCGACTTAAATGCGCGATGTTAGCGTTTGTAATCGTGAGCGTAACACTCGATCTTTGACTGTAG-----------------------------------------ACTGTCGTGTCTACATAGTGCTAGTTTGTATTGAGATAGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29082136 123 - 170955103 TGCATCTCTCTGAGTGAGGCGACTTAAATGCGCGATGTTAGCGTTTGTAATCGTGAGCGTAACACTCGATCTTTGACTGTAG-----------------------------------------ACTGTCGTGTCTACATAGTGCTAGTTTGTATTGAGATAGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2071680 123 -   2996164 TGCATCTCTCTGAGTGAGGCGACTTAAATGCGCGATGTTAGCGTTTGTAATCGTGAGCGTAACACTCGATCTTTGACTGTAG-----------------------------------------ACTGTCGTGTCTACATAGTGCTAGTTTGTATTGAGATAGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1934002 123 -   2157725 TGCATCTCTCTGAGTGAGGCGACTTAAATGCGCGATGTTAGCGTTTGTAATCGTGAGCGAAACACTCGGTCTTTGACTGTAG-----------------------------------------ACTGTCGTGTCTACATAGTGCTAGTTTGTATTGAGATAGTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28377472 123 -  71996105 TGCATCTCTCTGAGTGAGGCGACTTAAATGCGCGATGTTAGCGTTTGTAATCGTGAGCGTAACACTCGGTCTTTGACTGTAG-----------------------------------------ACTGTCGTGTCTACATAGTGCTAGTTTGTATTGAGATAGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2067577 123 +   2316924 TGCATCTCTCTGAGTGAGGCGACTTAAATGCGCGATGTTAGCGTTTGTAATCGTGAGCGTAACAGTCGGTCTTTGACTGTAG-----------------------------------------ACTGTCGTGTCTACATAGTGCTAGTTTGTATTGAGATAGTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1937603 123 -   3067355 TGCATCTCTCTGAGTGAGGCGACTTAAATGCGCGATGTTAGCGTTTGTAATCGCGAGCGTAACACTCGGTCTTTGACTGTAG-----------------------------------------ACTGTCGTGTCTACACAGTGCTAGTTTGTATTGAGATAGTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171465619 115 - 171630274 TGCAGCGCTCTGAGTGAGGCGGCTTAAATGTGGGGTGGTAGCGTTTGTAGTCGTGAGCGTAACACTCGATCTTTTTCTGTAG-----------------------------------------ACTGTTGTGTCTACATAGTGCTAATTTGTATTG--------
i calJac3.chr4             C 0 I 33778
s cebCap1.NW_016108108v1      285481 115 -    373274 TGCAGCGCTCTGAGTGAGGCGGCTTAAATGCGGGATGGTAGCGTTTGTAGTCGTGAGCGTAACACTGGATCTTTGTCTGTAG-----------------------------------------ACTGTTGTGTCTACACAGTGCTAATTTGTATTG--------
i cebCap1.NW_016108108v1   I 31 I 32701
s aotNan1.NW_018494050v1      218980 114 -    285216 TGCAGCGCTCTGAGTGAGGCGGCTTAAATGCGGAATGGTAGCGTTTGTAGTTGTGAGC-TAACACTCGATCTTTGTCTGTAG-----------------------------------------ACTGTTGTGTCTACATAGTGCTAATTTGTATTG--------
i aotNan1.NW_018494050v1   C 0 I 32024
e dasNov3.JH561790            100489 186 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1593443  20 -   2232465 I

a score=1369075.000000
s hg38.chr6_GL000254v2_alt    220257 264 +   4827813 CTAG-----TTTAA--------ttttt-ttttttttttttgagacggagtttcgttcttgtcgcccaggctggagggcaacggcgtgatcttgggtcactgcaacag-ctgcctccagggttcaagcga-ttctcctgcct-cagcctcccgagtagctgggataacaagcctgcaccaccacgcccggctaattttttgtatctttagtagagacggggtttcaccatgttggccaggctattctggaactgctgacctcaagtgatccgcccgcctcga
s panTro5.chr6              29207746 270 + 175400573 CTAG-----TTTAAttt-ttttttttt-ttttttttttttgagacggagtttcgttcttgtcgcccaggctggaggacaatggcgtgatcttgggtcactgcaacag-ctgcctccagggttcaagcga-ttctcctgcct-cagcctcccaagtagctgggatta-aagcctgcaccaccacgcccggctaattttttgtatctttagtagagacggggtttcaccatgttggccaggctattctggaactgctgacctcaagtgatccgcccgcctcga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29441745 263 + 173848474 CTAG-----TTTAA--------ttttt-ttttttttttttgagacggagtttcgttcttgtcgcccaggctggaggacaatggcgtgatcttgggtcactgcaacag-ctgcctccagggttcaagcca-ttctcctgcct-cagcctcccgagtagctgggatta-aagcctgcaccaccacgcccggctaattttttgtatctttagtagagacggggtttcaccatgttggccaggctattctggaactgctgacctcaagtgatccgcccgcctcga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5242495 261 +   6154872 CTAG-----TTTAA----------ttt-ttttttttttttgagacggagtttcgttcttgtcgcccaggctggagggcaatggcgtgatcttgggtcactgcaacag-ctgcctccagggttcaagcga-ttct-ctgcct-cagcctccctagtagctgggattacaagcctgcaccaccacgcccggctaattttttgtatctttagtagagacggggtttcaccatgttggccaggctattctggaactcctgacctcaagtgatccgcccgcctcga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74244078 267 + 122973662 CTAG-----TTTAA-----tttttttt-ttttttttttttgagacggagtttcgttcttgtcgcccaggctggagggcaatggcgtgatctcgggtcgctgcgaccg-ccgcctccagggtccaagcga-ttctcctgcct-cagcctcccgagtagctgggattacaagcctgcaccaccacgcccggctaattttttgtatctttagtagagacggggtttcaccatgttggccaggctagtctggaactcctgacctcaagtgatccgcccgcctcga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29421050 271 + 172585720 CTCG-----tttaatttaattaattaa-tttatttattttgagacggagtttcgttcttgtcgcccaggttggagtgcaatggcctgatctcgggtcactgcaatcg-ctacctccagggttcaagcga-ttctcctgcct-cagcctcccgagtagctgg-attacaaacctgcaccaccactcccggctaattttttgtatctttagtagagacggggtttcaccacgttggccaggctagtctggaactcctgacctcaagtgatccgcccgcctcga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29082259 271 - 170955103 CTCG-----TTTAATTTAATTAAttta-tttatttattttgagacggagtttcgttcttgtcgcccaggttggagtgcaatggcgtgatctcgggtcactgcaatcg-ctacctccagggttcaagcga-ttctcctgcct-cagcctcccgagtagctgg-attacaaacctgcaccaccactcccggctaattttttgtatctttagtagagacggggtttcaccacgttggccaggctagtctggaactcctgacctcaagtgatccgcccgcctcga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2071803 264 -   2996164 CTCG-----tttaatttaatttaatta-tttatttattttgagacggagtttcgttcttgtcgcccaggttggagtgcaa-ggcgtgaatctcggtcactgcaatcgcctacctccagcgttcaagcgatttctcctgcctgcagcctcccgagtagctggtattacaaacc-gcaccaccactccc-gctaattttttgtatcttta-tagagac--ggttccaccacg-tggccaggctagtctgaa---cctgacctc-agtgatccgcccgcctcga
i macNem1.NW_012011356v1   C 0 I 321
s cerAty1.NW_012001495v1     1934125 277 -   2157725 CTCGtttaatttaatttaatttaatta-tttatttattttgagacggagtttcgttcttgtcgcccaggttggagtgcaatggcgtgatctcgggtcactgcaatcg-ctaccttcagggttcaagcga-ttctcctgcct-cagcctcccgagtagctgggattacaaacctgcaccaccactcccggctaattttttgtatctttagtagagacggggtttcaccacgttgcccaggctagtctggaactcctgacctcaagtgatccgcccgcctcga
i cerAty1.NW_012001495v1   C 0 I 310
s chlSab2.chr17             28377595 277 -  71996105 CTCGtttaatttaatttaatttaatta-attatttattttgagacggagtttcgttcttgtcgcccaggttggagtgcaatggcgtgatctcgggtcactgcaatcg-ctacctccagggttcaagcga-ttctcctgcct-cagcctcccgagtagctgggattacaaacctgcaccaccactcccggctaattttttgtatctttagtagagacggggtttcaccacgttggccaggctagtctggaactcctgacctcaagtgatccgcccgcctcga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2067700 277 +   2316924 CTCGtttaatttaatttaatttaatta-tttatttattttgagacggagtttcattcttgtcgcccaggttggagtgcaatggcgtgatctcgggtcactgcaatcg-ctacctccagggttcaagcga-ttctcctgcct-cagcctcccgagtagctgggattacaaacctgcaccaccactcccggctaattttttgtatctttagtagagacggggtttcaccacgttgcccaggctagtctggaactcctgacctcaagtgatccgcccgcctcga
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1937726 277 -   3067355 CTCGtttaattaaattaaattaaattactttatttattttgagatggagtttcattcttgtcgcccaggctggagtgcaatggcgtgatctcgggtcgccgcaatcg-ctgcctccagggttcaagcga-ttctcctgcct-cagcctcccgagtacctgggattacaaacctgcaccaccactcctggctaattttttgtacctttagtagagacaggatttcaccatgttggccaggctagtctggaactcctgacctcaagtgatccg-ccgcctcga
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            100489 186 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1593443  20 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=219665.000000
s hg38.chr6_GL000254v2_alt    220521 41 +   4827813 cctcgcaaagtgctgggattacaggcctgagccaccgcgcc
s panTro5.chr6              29208016 41 + 175400573 cctcgcaaagtgctgggattacaggcctgagccaccgcgcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29442008 41 + 173848474 cctcgcaaagtgctgggattacaggcctgagccaccgcgcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5242756 41 +   6154872 cctcgcaaagtgctgggattacaggcctgagccaccgcgcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74244345 41 + 122973662 cctcccaaagtgctgggattacaggcctgaacctccgcgcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29421321 41 + 172585720 cctcccaaagtggtgggtttacaggcctgcaccaccgcgcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29082530 41 - 170955103 cctcccaaagtggtgggtttacaggcctgcaccaccgcgcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2072388 41 -   2996164 cctcccaaagtgctgggattacaggcttgagccaccgcgcc
i macNem1.NW_012011356v1   I 321 C 0
s cerAty1.NW_012001495v1     1934712 41 -   2157725 cctcccaaagtgctggtattacaggcttgagccaccgcgcc
i cerAty1.NW_012001495v1   I 310 C 0
s chlSab2.chr17             28377872 41 -  71996105 cctcccaaagtggtgggattacaggcctgaaccaccgcgcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2067977 39 +   2316924 cctcccaa--tggtgggattacaggcctgaaccaccgcgcc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1938003 41 -   3067355 cctcccaaagtggtgggattacaggcctgagccaccgcgcc
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            100489 186 -    302817 I
e canFam3.chr35             25951634 857 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1593443 20 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=29219.000000
s hg38.chr6_GL000254v2_alt    220562 7 +   4827813 cggccTT
s panTro5.chr6              29208057 7 + 175400573 cggccTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29442049 7 + 173848474 tggccTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5242797 7 +   6154872 cggcTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74244386 7 + 122973662 cggccTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29421362 7 + 172585720 cggccTT
i rheMac8.chr4             C 0 I 313
s macFas5.chr4              29082571 7 - 170955103 cggccTT
i macFas5.chr4             C 0 I 317
s macNem1.NW_012011356v1     2072429 5 -   2996164 cggcc--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1934753 5 -   2157725 cggcc--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28377913 7 -  71996105 cggcctt
i chlSab2.chr17            C 0 I 313
s manLeu1.NW_012104165v1     2068016 7 +   2316924 cggcctt
i manLeu1.NW_012104165v1   C 0 I 288
s colAng1.NW_012115566v1     1938044 7 -   3067355 cggcttt
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH561790            100675 7 -    302817 CGGTGCT
i dasNov3.JH561790         I 186 C 0
e canFam3.chr35             25951634 857 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1593443 20 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=34728.000000
s hg38.chr6_GL000254v2_alt    220569 5 +   4827813 AGTTT
s panTro5.chr6              29208064 5 + 175400573 AGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29442056 5 + 173848474 AGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5242804 5 +   6154872 AGTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74244393 5 + 122973662 AGTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29421682 5 + 172585720 agttt
i rheMac8.chr4             I 313 C 0
s macFas5.chr4              29082895 5 - 170955103 AGTTT
i macFas5.chr4             I 317 C 0
s macNem1.NW_012011356v1     2072434 5 -   2996164 AGTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1934758 5 -   2157725 agttt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28378233 5 -  71996105 AGTTT
i chlSab2.chr17            I 313 C 0
s manLeu1.NW_012104165v1     2068311 5 +   2316924 AGTTT
i manLeu1.NW_012104165v1   I 288 C 0
s colAng1.NW_012115566v1     1938051 5 -   3067355 agttt
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH561790            100682 5 -    302817 GGTTT
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25951634 857 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1593443 20 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=582598.000000
s hg38.chr6_GL000254v2_alt    220574 85 +   4827813 AATTTTTAACATTGTGAATATTATGGCCAGATTTTT--AGAGTTTAGATAACGAAAACGAGAACGATTATCATGCGAACGCCAGCAT
s panTro5.chr6              29208069 85 + 175400573 AATTTTTAACATTGTGAATATTATGGCCAGATTTTT--AGAGTTTAGATAACGAAAACGAGAACGATTATCATGCGAACGCCAGCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29442061 85 + 173848474 AATTTTTAACATTGTGAATATTATGGCCAGATTTTT--AGAGTTTAGATAACGAAAACGAGAACGATTATCATGCGAACGCCAGCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5242809 85 +   6154872 AATTTTTAGCATTGTGAATATTATGGCCAGATTTTT--AGAGTTTAGATAACGAAAACGAGAACGATTATCATGCGAACGCCAGCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74244398 85 + 122973662 AATTTTTAACATTGTGAATATTATGGCCAGATTTTT--AGAGTTTAGATAACGAAAACGAGAACGATTATCATGCGAACGCCAGCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29421687 85 + 172585720 aatttTTAACATTGTGAATACTATGGCCAGATTTTT--AGAGTTTAGATAACGAAAATGAGAACGATTATCATGCGAATGCCAGCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29082900 85 - 170955103 AATTTTTAACATTGTGAATACTATGGCCAGATTTTT--AGAGTTTAGATAACGAAAATGAGAACGATTATCATGCGAATGCCAGCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2072439 85 -   2996164 AATTTTTAACATTGTGAATACTATGGCCAGATATTT--AGAGTTTAGATAACGAAAATGAGAACGATTATCATGCGAATGCCAGCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1934763 85 -   2157725 aatttTTAACATTGTGAATACTACGGCCAGATTTTT--AGAGTTTAGATAACGAAAATGAGAACGATTATCATGCGAATGCCAGCAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28378238 85 -  71996105 AATTTTTAACATTGTGAATACTATGCCCAGATTTTT--AGAGTTTAGATAACGAAAATGAGAACGATTATCATGCGAATGCCAGCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2068316 85 +   2316924 AATTTTTAACATTGTGAATACTATGGCCAGATTTTT--AGAGTTTAGATAACGAAAATGAGAACGATTATCATGCGAATGCCAGCAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1938056 85 -   3067355 aatttTTAACATTGTGAATACTATGGCCAGATTTTT--AGAGTTTAGATAACGAAAACGAGAATGATTATCACGCGAATGCCAGCAT
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25952491 86 +  26524999 AATTTTTAAC-CTGGGAACAGCGCGACCATATTTTCTAAGAGTTTGAATAACGAAAAAGAGAATGATTACCATAGGAACGCCAGCCT
i canFam3.chr35            I 857 C 0
s dasNov3.JH561790            100687 80 -    302817 AATTTTTAACGCTGCAGAGTTTATGACTA----TGA--AGAATTCAGATATCAAAAATGAGAGCAATTACAGTATCAAAGCCAGAA-
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1593443 20 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=2868255.000000
s hg38.chr6_GL000254v2_alt    220659 578 +   4827813 AACCCAGATAGCACTGAAAA-AGTCTAAATAGAC-TGTTACTTCAATGACAGATAGAAGGACACA---TACAACCGGA-TTTGGAGAATAAATAATCAAAACGGAGCATACTACGCAATATTCA------------------AAACAG-ATTTGG--------ATGTGAAAG------------TACACAGGGAGACGGCATCTCTCAAGTCTGGGATGAGACAGGCAAGAACTTCTGAACCAATCAAAAGTGTTTTTGTCTCCCAAAAGTGACACCAGCGCTCTGTAGAGAATAGCATTGGGCTTGCTTACAAGGAGACCTTAAAAAAAGTTAAAAT------TAAATAAAAGAAAATGGTATTGGGCAGAATATTAGAAAAGA-ACACGCATTATTTTATGGCTTCCTTAATTACTCTATTTCCTGATTCAGAGGTTGCATCT---------CGTGGGTGAAC----------------AAGA--GGAAA---TTCTGATACCACATATTGGTCTCTTGCAGT---GTACAGCTGATTCTATCAGAC-----------------GACCTTG--CTCTCTACAACAT-------------AATGATGTGTCAA-ATCCACCTCAACCATT---AAAAAAAAAGT--------TTCCCTTAGCTCTTACATACTTTGATTTGAAACATGATGTTGAAAATCATCTTT
s panTro5.chr6              29208154 577 + 175400573 AACCCAGATAGCACTGAAAA-AGTCTAAATAGAC-TGTTACTTCAATGACAGATAGAAGGACACA---TACAACCGTA-TTTGGAGAATAAATAATCAAAACGGAGCATACTATGCAATATTCA------------------AAACAG-ATTTGG--------ATGTGAAAG------------TACACAGGGAGACGGCATCTCTCAAGTCTGGGATGAGACAGGCAAGAACTTGTGAACCAATCAAAAGTGTTTTTGTCTCCCAAAAGTGACACAAGCGCTCTGTAGAGAATAGCATTGGGCTTGCTTACAAGGAGACCTTAAAAAAAGTTAAAAT------TAAATAAAAGAAAATGGTATTGGGCAGAATATTAGAAAAGA-ACACGCATTATTTTATGGCTTCCTTAATTACTCTATTTCCTGATTCAGAGGTTGCATCT---------CGTGGGTGAAC----------------AAGA--GGAAA---TTCTGATACCACATATTGGTGTCTTGCAGT---GTACAGCTGATTCTATCAGAC-----------------GACCTTG--CTCTCTACAACAT-------------AATGATGTGTCAA-ATCCACCTCAACCATT----AAAAAAAAGT--------TTCCCTTAGCTCTTACATACTTTGATTTGAAACATGATGTTGAAAATCATCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29442146 578 + 173848474 AACCCAGATAGCACTGAAAA-AGTCTAAATAGAC-TGTTACTTCAATGACAGATAGAAGGACACA---TACAACCGGA-TTTGGAGAATAAATAATCAAAACGGAGCATACTATGCAATATTCA------------------AAACAG-ATTTGG--------ATGTGAAAG------------TACACAGGGAGACGGCATCTCTCAAGTCTGGGATGAGACAGGCAAGAACTTGTGAACCAATCAAAAGTGTTTTTGTCTCCCAAAAGTGACACCAGCGCTCTGTAGAGAATAGCATTGGGCTTGCTTACAAGGAGACCTTAAAAAAAGTTAAAAT------TAAATAAAAGAAAATGGTATTGGGCAGAATATTAGAAAAGA-ACACGCATTATTTTATGGCTTCCTTAATTACTCTATTTCCTGATTCAGAGGTTGCATCT---------CGTGGGTGAAC----------------AAGA--GGAAA---TTCTGATACCACATATTGGTGTCTTGCAGT---GTACAGCTGATTCTATCAGAC-----------------GACCTTG--CTCTCTACAACAT-------------AATGATGTGTCAA-ATCCACCTCAACCATT---AAAAAAAAAGT--------TTCCCTTAGCTCTTACATACTTTGATTTGAAACATGATGTTGAAAATCATCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5242894 578 +   6154872 AACCCAGATAGCACTGAAAA-AGTCTAAATAGAC-TGTTACTTCGATGACAGATAGAAGGACACA---TACAACCGGA-TTTGGAGAATAAATAATCAAAACGGAGCATACTACGCAATATTCA------------------AAACAG-ATTTGG--------ATGTGAAAG------------TACACAGGGAGACGGCATCTCTCAAGTCTGGGATGAGACAGGCAAGAACTCGTGAACCAATCAAAAGTGTTTTTGTCTCCCAAAAGTGACACCAGCGCTCTGTAGAGAATAGCATTGGGCTTGCTTACAAGGAGACCTTAAAAAAACTTAAAAT------TAAATAAAAGAAAATGGTATTGGGCAGAATATTAGAAAAGA-ACAAGCATTATTTTATGGCTTCCTTAATTACTCTATTTCCTGATTCAGAGGTTGCATCT---------CGTGGGTGAAC----------------AAGA--GGAGA---TTCTGATACCACATATTGGTCTCTTGCAGT---GTACAGCTGATTCTATCAGAC-----------------GACCTTG--CTCTCTACAACAT-------------AACGATGTGTCAA-ATCCACCTCAACCATT---AAAAAAAAAGT--------TTCCCTTACCTCTTACATACTTTGATTTGAAACATGATGTTGAGAATCATCTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74244483 578 + 122973662 AACCCAGATAGCACTGAAAA-AGTCTAAATAGAC-TGTTACTTGAATGACAGATAGAAGGACACA---TACAACTGGA-TTTGAAGAATGAATAATCAAAACGGAGCATACCACACAATATTCA------------------AAACAG-ATCTGG--------ATGTGAAAG------------TACACAGGGAGATGGCATCTCTCAAGTCTGGGATGAGACAGGCAAGAACTTGTGAACCAATCAAAAGGGTTTTTGTCTCCCAAAAGTGACACCAACCCTCTGTAGAGAATAGCATTGGGCTTGCTTACAAGGAGACCTTAAAAAAAATTAAAAT------TAAATAAGAGAAAATGGTA-TGGGCAGAATATTAGAAAAGA-ACACACATTATTTTATGGCTTCCTTAATTACTCTATTTCCTGATTCAGAGGTTGAATCT---------CGTGGGAGAAC----------------AAGA--GGAAA---TTCTGATACCACATACTGGTCTCTTGCACT---GTAGAGGTGATTCTATCAGAT-----------------GACCTTG--CTCTCTACAACAT-------------AATGATGTGTCAA-ATCCACCTCAACCATT--AAAAAAAAAAGT--------TTCCCTTAGCTCTTACATACTTTGATTTGAAACATGATGGTGAAAATCATCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29421772 486 + 172585720 AACTCAGATAGCACTGAAAA-AGTCTAAACAGAC-TGTTACTTGAATGACAGATAGAAGG------------ACTGGA-TTTGGAGAATATATAATCAAAACGGAGCATACTACGCAAAATTCA------------------AAACAG-ATTTGG--------ATGTGAAAG------------TACACAGGGACACTGCATCTCTCCAGTCTGGGATGAG--AGGCAAGAACTTGTGAACCAATCTAAAGAGTTTTTGTCTCCCAAAAGTGACGCCAACACTCTGTAGAGAATAGCATTGGGTTTGCTTACAAGCAGACCTTAAAGAAAATTAAAATTAAAAATAAATACAAGAAAATAGCATTGGGCAGAATATTAGAAAAGA-ACACACATTATTTTATGGCTTCCTTAATTACTCTATTTCCTGATGCAGAGGTTGCATCT---------CCTAGGTGAAC----------------AAGA--GGAAA---TTCGGATACCACATATTGATCTCTTGCAGT---GGAGAGCTGATTCTATCAGAT-----------------G----------------------------------------------------------ACCAGC--------------------------------------------------------TGATGTTGAAAATCATCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29082985 486 - 170955103 AACTCAGATAGCACTGAAAA-AGTCTAAACAGAC-TGTTACTTGAATGACAGATAGAAGG------------ACTGGA-TTTGGAGAATATATAATCAAAACGGAGCATACTACGCAAAATTCA------------------AAACAG-ATTTGG--------ATGTGAAAG------------TACACAGGGACACTGCATCTCTCCAGTCTGGGATGAG--AGGCAAGAACTTGTGAACCAATCTAAAGAGTTTTTGTCTCCCAAAAGTGACGCCAACACTCTGTAGAGAATAGCATTGGGTTTGCTTACAAGCAGACCTTAAAGAAAATTAAAATTAAAAATAAATACAAGAAAATAGCATTGGGCAGAATATTAGAAAAGA-ACACACATTATTTTATGGCTTCCTTAATTACTCTATTTCCTGATGCAGAGGTTGCATCT---------CCTAGGTGAAC----------------AAGA--GGAAA---TTCGGATACCACATATTGATCTCTTGCAGT---GGAGAGCTGATTCTATCAGAT-----------------G----------------------------------------------------------ACCAGC--------------------------------------------------------TGATGTTGAAAATCATCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2072524 486 -   2996164 AACTCAGATAGCACTGAAAA-AGTCTAAACAGAC-TGTTACTTGAATGACAGATAGAAGG------------ACTGGA-TTTGGAGAATATATAATCAAAACGGAGCATACTACGCAAAATTCA------------------AAACAG-ATTTGG--------ATGTGAAAG------------TACACAGGGACACTGCATCTCTCCAGTCTGGGATGAG--AGGCAAGAACTTGTGAACCAATCTAAAGAGTTTTTGTCTCCCAAAAGTGACGCCAACACTCTGTAGAGAATAGCATTGGGTTTGCTTACAAGCAGACCTTAAAGAAAATTAAAATTAAAAATAAATACAAGAAAATATCATTGGGCAGAATATTAGAAAAGA-ACACACATTATTTTATGGCTTCCTTAATTACTCTATTTCCTGATGCAGAGGTTGCATCT---------CCTAGGTGAAC----------------AAGA--GGAAA---TTCGGATACCACATATTGATCTCTTGCAGT---GGACAGCTGATTCTATCAGAT-----------------G----------------------------------------------------------ACCAGC--------------------------------------------------------TGATGTTGAAAATCATCTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1934848 497 -   2157725 AACTCAGACAGCACTGAAAA-AGTCTAAACAAAC-TGTTACTTGAATGACAGATAGAAGGACACA---TACAACTGGA-TTTGGAGAATAAATAATCAAAACGGAGCATACTACGCAATATTCA------------------AAACAG-ATTTGG--------ATGTGAAAG------------TACACAGGGACACTGCATCTCTCCAGTCTGGGATGAGACAGGCAAGAACTTGTGAACCAATCTAAAGAGTTTTTGTCTCCCAAAAGTGATGCCAACAGTCTGTAGAGAATAGCATTGGGTTTGCTTACAAGCAGACCTTAAAGAAAATTAAAATTAAAAATAAATACAAGAAAATAGCATTGGGCAGAATATTAGAAAAGA-ACACACATTATTTTATGGCTTCCTTAATTACTCTATTTCCTGATGCAGAGGTTGCATCT---------CGTAGGTGAAC----------------AAGA--GGAAA---TTCGGATACCACATATTGGTCTCTTGCAGT---GGAGAGCTGATTCTATCAGAT-----------------G----------------------------------------------------------ACCAGC--------------------------------------------------------TGATGTTGAAAATCATCTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28378323 497 -  71996105 AACTCAGATAGCACTGAAAA-AGTCTAAACAGAC-TGTTACTTGAATGACAGATAGAAGGACACA---TACAACTGGA-TTTGGAGAATAAATAATCAAAACAGAGCATAGTACGCAATATTCA------------------AAACAG-ATTTGG--------ATGTGAAAG------------TACACAGGGACACTGCATCTCTCCAGTCTGGGATGAGACAGGCAAGAACTTGTGAACCAATCTAAAGAGTTTTTGTCTCCCAAAAGTGACGCCAACACTCTGTAGAGAATAGCATTGGGTTTGCTTACAAGCAGACCTTAAAGAAAATTAAAATTAAAAATAAATACAAGAAAATAGCATTGGGCAGAATATTAGAAAAGA-ACACACATTATTTTATGGCTTCCTTAATTACTCTATTTCCTGATGCAGAGGTTGCATCT---------CGTAGGTGAAC----------------AAGA--GGAAA---TTCGGATACCACGTATTGGTCTCTTGCAGT---GGAGAGCTGATTCTATCAGAT-----------------G----------------------------------------------------------ACCAGC--------------------------------------------------------TGATGTTGAAAATCATCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2068401 497 +   2316924 AACTCAGACAGCCCTGAAAA-AGTCTAAACAAAC-TGTTACTTGAATGACAGATAGAAGAACACA---TACAACTGGA-TTTGGAGAATAAATAATCAAAACGGAGCATACTACGCAATATTCA------------------AAACAG-ATTTGG--------ATGTGAAAG------------TACACAGGGACACTGCATCTCTCCAGTCTGGGATGAGACAGGCAAGAACTTGTGAACCAATCTAAAGAGTTTTTGTCTCCCAAAAGTGATGCCAACACTCTATAGAGAATAGCATTGGGTTTGCTTACAAGCAGACCTTAAAGAAAATTAAAATTAAAAATAAATACAAGAAAATAGCATTGGGCAGAATATTAGAAAAGA-ACACACATTATTTTATGGCTTCCTTAATTACTCTATTTCCTGATGCAGAGGTTGCATCT---------CGTAGGTGAAC----------------AAGA--GGAAA---TTCGGATACCACATATTGGTCTCTTGCAGT---GGAGAGCTGATTCTATCAGAT-----------------G----------------------------------------------------------ACCAGC--------------------------------------------------------TGATGTTGAAAATCATCTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1938141 497 -   3067355 AACCCAGAGAGCACTGAAAA-AGTCTAAAAAGAT-TGTTACTTGAATGACAGATAGAAGGACACA---TAGAACTGGA-TTTGGAGAATAAATAATCAAAACGGAGCATACTACGCAATATTCA------------------AAACAG-ATTTGG--------ATGTGAAAG------------TACACAGGGACACTGCATCTCTCCAGTCTAGGATGAGACAGGCAAGAACTTGTGAACCAATCAAAAGAGTTTTTGTCTCCCAAAAGTGACGCCAACGCTCTGTAGAGAATAGCATTGGGCTTGCTTACAAGCAGACTTTAAAGAAAATTAAAATTAAAAATAAATACAAGAAAACGGCATTGGGCAGAATATTAGAAAAGA-ACACACATTATTTTATGGCTTCCTTAATTACTCTATTTCCTGATTCAGAGGTTGCATCT---------CGTAGGTGAAC----------------AAGA--GGAAA---TTCGGATACCACATATTGGTCTCTTGCAGT---GGAGAGCTGATTCTGTCAGAT-----------------G----------------------------------------------------------ACCAGC--------------------------------------------------------TGATGTTGAAAATCATCTTT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1593463 536 -   2232465 AACCCAGACATCACTGAAAA-AATCTCCTAA-----GTTGTTTTAATGAC-------AGGACATATTGTGCAAGTGGATTTTGGAGGATGAACAATCAAAACAAAACATACTGTGTAATATTCA------------------AGAGAGAATTTGG--------ATGTCAGAA------------TATTAAGGGAGACTGAATCTCAAAAATTTGGAATAAGACAGGCAACAATTTTGGAATCAATCAAAGGTTTTTTCATCTCCCCAAAAAGACATCAATGCTAAGTCTAAAGTAACATTGGGC--------------------------------------------------------------------ATAGTAGAAAAG--ACAGGCATTATTTTATGTGTCCCGTGATTATTCTTATTCTTGATTTAGAGGTTGCAACT---------CATGGGCACACACACAAAAGAAAAAGTAAAA--GGAAA---TTTTGATGCTGTGTATTGTCTCCTTCCAAT---GCAGACCTAATTTTGCCACAT-----------------GACCTTGCTCTCTCTACAATATT--------ATGAAGTGATGTGTTGA-ATC-------ACTGGTTACAAAAGAAAAACAACAACAAACCCCCTGTCTCTCAAGTATTTTAATTTGAAAGATGACATTGAAAATCATCTTC
i otoGar3.GL873742         I 20 I 2350
s canFam3.chr35             25952577 512 +  26524999 GACCCAGACATCACTGAAAA-AGTAGAAAT-GAC-TGTCATTCCAAGGACAAAAGGAAAGACAGG---TGCACCTGGG-TGTGGG----AGGTAACCAAAAGGGAGGGTACTACATAGTATGTG------------------GAAGAGAATTTGGAACTCTACATGTCAGAGGAGGCATGCAGTTGTATAGGGAACCTAAATCT-GCAAATCC-------------CATGACCTGCCGAATCAA--AGATTTTTTTTCACCTCCC-------ACACCAACACTCATTTGAAAATAGCATTGTGTCT-----------------------------------------------------------------AATACTACAAGAAACACATGCATTATCTTAT--------TGATTGCTCTATTTCCTGATTCAGAAATTGCAAGG---------CGAGGACATAC----------------AAGACGGGACA---TTTCTATGCTGTGTATTGGCCTCTTGCACC---ATGGAGCTGATTCCAACAGAT-----------------GAACTCG--CTCTGTACAATATGGCACCAA-ATTGGGTCGTGTGTCAAGATAC------AGCAAC----AAGAACAAAT--------TTCCCCCAGCTCCTATGTACTATTATTTGAAGCATAGCATGGAAAACCTTCTT-
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            100767 531 -    302817 GATCCAGACCTCACTGAAAAGAGTCTAAATGTTTGTGCTATTTCAATGCCAGATGGAAGGACACA---TACAAC-AGA-TTAGGAAGGTAGATACCCAAAACTGGACGTGCTGCGGAAAATACATTGGGATTGGGCCTGCTGGAGAAG-A---GG--------ATAGGAAAG--------------CACAGGCAAAGCCTGACTCACCAGCTCTGCGTGAGACAGGCAAGCACTTGTAAATCAATCAAAAGCTTTTCAGCTCCCCAAA--TGGCAACGTCATTCTC-----AGTAACAGCGTGTC-------------------------------------------------------------------------------A-ACACGCATTACGTTACGG-TTCCTGGTTCCCTCTATTTCCTGATTGTGAGATGGCAACTAAAACACCCCACGGGCGAAC----------------AAAA--GGGAAAGCTTTGGTAACCAC----TGGCCCCCTACAGCGAGGCAGAGCTGATTCAGTCAGGTCCTTAGGCCTTACTAAGGGCCTTG--CTCTCTACAGTAT---GTCAGTTTCGAGTGATGTGTCAAACCACAGCAACAGCAAC----GACAAAATGT--------TCCCCCTAGCTCGTA-GTGCTTTAATT-------TGAC--------CCATCT--
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            289377 32330 -    375362 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=1290467.000000
s hg38.chr6_GL000254v2_alt    221237 176 +   4827813 CCTGGTATGCATGAAGA-CTTAA-TGAAACCACTTGAAGCATAAA-----CAATCA--TTGATATGTTGGTCAACTACAAGTTAGATCTTGCTCATCTATCTGCA-TATTTGGCAGACAGTGCAAATGTAAATTTTGGCAAA-TTCCATTCAGACTATAAAC-TTTCTACCAAAGAAAATGAAAAGAT
s panTro5.chr6              29208731 176 + 175400573 CCTGGTGTGCATGAAGA-CTTAA-TGAAACCACTTGAAGCATAAA-----CAATCA--TTGATATGTTGGTCAACTACAAGTTAGATCTTGCTCATCTATCTGCA-TATTTGGCAGACAGTGCAAATGTAAAATTTGGCAAA-TTCCATTCAGACTATTAAC-TTTCTACCAAAGAAAATGAAAAGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29442724 176 + 173848474 CCTGGTATGCATGAAGA-CTTAA-TGAAACCACTTGAAGCATAAA-----CAATCA--TTGATATGTTGGTCAACTACAAGTTAGATCTTGCTCATCTATCTGCA-TATTTGGCAGACAGTGCAAATGTAAAATTTGGCAAA-TTCCATTCAGACTATTAAC-TTTCTACCAAAGAAAATGAAAAGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5243472 175 +   6154872 CCTGGTATGTATGAAGA-CTTAA-TGAAACCACTTGAAGCATAAA-----CAATCA--TTGATATGTTGGTCAACTACAAGTTAGATCTTGCTCATCTATCTGCA-TATTTGGCAGACAGTGCAAATGTAAA-TTTGGCAAA-TTCCATTCAGACTATAAAC-TTTCTACCAAAGAAAATGAAAAGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74245061 176 + 122973662 CTTGGTATGTATGAAGG-CTTAA-TGAAACCACTTGAAGCATAAA-----CAATCA--TTGATATGTTGGTCAACTACAAGTTAGACCTTGCTCATCTATCTGCA-TATTTGGCTGACAGTGCAAATGTAAATTTTGGCAAA-TTCCATTCAGACTATGAAC-TTTTAAGCAAAGAAAATGAAAAGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29422258 172 + 172585720 CTTGGTATGTATGAAGA-CTTAA-TGAAACCACTTGAAACAT---------AATCA--TTGATACGTTGGTCAACTACAAGTTAGACCTTGCTCATCTATCTGCA-TATTTGGCAGACAGTGCAAATGTAAATTTTGGCAAA-TTCCATTCAGACTATAAAC-TTTTTACCAAAGAAAATGAAAATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29083471 172 - 170955103 CTTGGTATGTATGAAGA-CTTAA-TGAAACCACTTGAAACAT---------AATCA--TTGATACGTTGGTCAACTACAAGTTAGACCTTGCTCATCTATCTGCA-TATTTGGCAGACAGTGCAAATGTAAATTTTGGCAAA-TTCCATTCAGACTATAAAC-TTTTTACCAAAGAAAATGAAAAGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2073010 172 -   2996164 CTTGGTATATATGAAGA-CTTAA-TGAAACCACTTGAAACAT---------AATCA--TTGATACGTTGGTCAACTACAAGTTAGACCTTGCTCATCTATCTGCA-TATTTGGCAGACAGTGCAAATGTAAATTTTGGCAAA-TTCCATTCAGACTATAAAC-TTTTTACCAAAGAAAATGAAAAGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1935345 176 -   2157725 CTTGGTATGTATGAAGA-CTTAA-TGAAACCACTTGAAACATGAA-----CAATCA--TTGATACGTTGGTCAACTACAAGTTAGACCTTGCTCATCTATCTGCA-TATTTGGCAGACAGTACAAATGTAAATTTTGGCAAA-TTCCATTCAGACTATAAAC-TTTTTACCAAAGAAAATGAAAAGAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28378820 176 -  71996105 CTTGGTATGTATGAAGA-CTTAA-TGAAACCACTTGAAACATAAA-----CAATCA--TTGATACGTTGGTCAACTACAAGTTAGACCTTGCTCATCTATCTGCA-TATTTGGCAGACAGTGCAAATGTAAATTTTGGCAAA-TTCCATTCAGACTATAAAC-TTTTTACCAAAGAAAATGAAAAGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2068898 176 +   2316924 CTTGGTATGTATGAAGA-CTTAA-TGAAACCACTTGAAACATAAA-----CAATCA--TTGATACGTTGGTCAACTACAAGTTAGACCTTGCTCATCTATCTGCA-TATTTGGCAGACAGTGCAAATGTAAATTTTGGCAAA-TTCCATTCAGACTATAAAC-TTTTTACCAAAGAAAATGAAAAGAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1938638 174 -   3067355 CTTGGTATGTATGAAGA-CTTAA-TGAAACCACTTGAAACAA--A-----CAATCA--TTGATTCGTTGGTCAACTACAAGTTAGACCTTGCTCATCTATCTGCA-TATTTGCCAGACAGTGCAAATGTAAATTTTGGCAAA-TTCCATTCAGACTATAAAC-TTTTTACCAAAGAAAATGAAAAGAT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1596349 181 -   2232465 CTAGATACATATGAGGA-CTTAT-TAAAATCACTGAAAACATAAAAC---AAACCATGTTGATATCTTGGTCAAACACAAGTTCTACCTTGTTCATCTATCTGTGCTATCAGGCAGACAGAGCAAATGTAAATTTTGGCAAA-CTCCATTCAGACTATAAAG-TTCTTACCAAAAAAAGTAAAAAAAT
i otoGar3.GL873742         I 2350 C 0
s canFam3.chr35             25953089 178 +  26524999 CCTGATCAGTATGTAGA-TTTAATTAAAACTTCCAGATACATAAAAC---TAGTGA--TTACTA--GTGATTAAATACAAAATGGACCTTGCTCAGACATCTGCA-TGTTTCGCAGAAGGTGCAAATGT-AATTTTGGCAAATTTCCACTTAGCCTATAAGCTTTTTTATCAAAGAAAATGAAAAGAT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            101298 179 -    302817 TCTGAGGGGTATGAAGATTTTAA-TGAAACCACAGGAAATGTTAAACAGAAGATTG--TTAACATCTTGTTCAAATACAAACCTGACCTTGTCCATGTATCTGTA-TATTT-GCAGACAACACAAATGTA---TTTGACAAATTTTCATTCAGTTGATAAAC-TTCTCACCAAAGAAAATGAAAAGAT
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            289377 32330 -    375362 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=224370.000000
s hg38.chr6_GL000254v2_alt    221413 35 +   4827813 CTTACATG-TGACGTGTTCTGCACATGTTGTTCACA
s panTro5.chr6              29208907 35 + 175400573 CTTACATG-TGACGTGTTCTGCACATGTTGTTCACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29442900 35 + 173848474 CTTACATG-TGACGTGTTCTGCACATGTTGTTCACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5243647 35 +   6154872 CTTACATG-TGAAATGTTCTGCACATGTTGTTCACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74245237 35 + 122973662 CTTACATG-TGAAGTGTTCTGCACATGTTGTTTACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29422430 35 + 172585720 CTTACATG-TGAACTGTTCTGCACACGTTGTTCACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29083643 35 - 170955103 CTTACATG-TGAACTGTTCTGCACACGTTGTTCACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2073182 35 -   2996164 CTTACATG-TGAACTGTTCTGCACACGTTGTTCACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1935521 35 -   2157725 CTTACATG-TGAACTGTTCTGCACACGTTGTTCACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28378996 35 -  71996105 CTTACATG-TGAACTGTTCTGCACACGTTGTTCACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2069074 35 +   2316924 CTTACATG-TGAACTGTTCTGCACACGTTGTTCACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1938812 35 -   3067355 CCTACATG-TGAACTGTTCTGCACACGTTGTTCACA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1596530 34 -   2232465 TGTACATGATGA--TGTTTTGTACACCTTGTACACA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25953267 35 +  26524999 ATTATCTG-GTGAGTGTTCTACACAACTTGTCTGCA
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790            101477  0 -    302817 C
e saiBol1.JH378348            289377 32330 -    375362 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=57615.000000
s hg38.chr6_GL000254v2_alt    221448 9 +   4827813 ACACTGCTA
s panTro5.chr6              29208942 9 + 175400573 ACACTGCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29442935 9 + 173848474 ACACTGCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5243682 9 +   6154872 ACACTGCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74245272 9 + 122973662 ATACTTCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29422465 9 + 172585720 ACACTGCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29083678 9 - 170955103 ACACTGCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2073217 9 -   2996164 ACACTGCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1935556 9 -   2157725 ACACTGCTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28379031 9 -  71996105 ACACTGCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2069109 9 +   2316924 ACACTGCTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1938847 9 -   3067355 ACACTGCTG
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25953302 9 +  26524999 ACACTGCTA
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790            101477 0 -    302817 C
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1596564 0 -   2232465 C
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=683173.000000
s hg38.chr6_GL000254v2_alt    221457 123 +   4827813 AGAggccgggcgtgatggctcacgcctgtaatcccagcactttaggaggccaaagctggtggatcacctgaggtcaggagtttgagaccagcctggctaacatggtgaaaccccgtttctact
s panTro5.chr6              29208951 123 + 175400573 AGAggccgggcgtgatggctcacgcctgtaatcccagcactttaggaggccaaagcgggtggatcacctgaggtcaggagtttgagaccagcctggctaacatggtgaaaccccttttctact
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29442944 123 + 173848474 AGAggccgggcgtgatggctcacgcctgtaatcccagcactttaggaggccaaagcgggtggatcacctgaggtcaggagtttgagaccagcctggctaacatggtgaaaccccttttctact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5243691 123 +   6154872 AGAggccgggcgtgatggctcacgcctgtaatcccagcactttaggaggccaaagcgggtggatcacctgaggtcaggagtttgagaccagcctggctaacatggtgaaaccccgtttctact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74245281 123 + 122973662 AAAggtcaggcgtgatggctcacacctgtaattccagcactttaggaggccaaggcgggtggatcacctgaagtcaggaatttgagaccagcctggctaacatggtgaaaccccgtttctact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29422474 122 + 172585720 AGAggcccggcatgagagctcaggcctgtaatcccagcactgtgggaggccaaggcgggt-gatcacctgaggtcaggagtttgagaccagcctggctaaaatggtgaaaccccgtttctact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29083687 122 - 170955103 AGAggcccggcatgagagctcaggcctgtaatcccagcactgtgggaggccaaggcgggt-gatcacctgaggtcaggagtttgagaccagcctggctaaaatggtgaaaccccgtttctact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2073226 122 -   2996164 AGAggcccggcatgagagctcaggcctgtaatcccagcactgtgggaggccaaggcgggt-gatcacctgaggtcaggagtttgagaccagcctggctaaaatggtgaaaccccgtttctact
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1935565 123 -   2157725 AGAggcccagcatgagagctcaggcctgtaatcccagcactgtgggaggccaaggcgggtggatcacctgaggtcaggagtttgagaccagcctggctaaaatggtgaaaccccgtttctact
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28379040 123 -  71996105 AGAggcccggcataagagctcaggcctgtaatcccagcactgtgggaggccaaggcgggtggatcacctgaggtcaggagtttgagaccagcctggctaaaatggtgaaatcccgtttctact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2069118 123 +   2316924 AGAggcccggcatgagacctcaggcctgtaatcccagcactgtgggaggccaaggcgggtggatcacctgaggtcaggagtttgagaccagcctggctaaaacggtgaaaccccgtttctact
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1938856 123 -   3067355 AGAggcccggcatgaccgctcaggcctgtaatcccagcactgtgggaggccaaggcgggtggatcacccgaggtcaggagtttgagaccagcctggctaaaatggtgaaaccccgtttctact
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            101477   0 -    302817 C
e canFam3.chr35             25953311   0 +  26524999 C
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1596564   0 -   2232465 C
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=410383.000000
s hg38.chr6_GL000254v2_alt    221580 71 +   4827813 aaaaatac-aaaaaatcaacggggtgtggtggcacatgcctgtaatcccagctactcgggaggctgaggcag
s panTro5.chr6              29209074 71 + 175400573 aaaaatac-aaaaaatcaacagggtgtggtggcacatgcctgtaatcccagctactcaggaggctgaggcag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29443067 71 + 173848474 aaaaatac-aaaaaatcaacagggtgtggtggcacatgcctgtaatcccagctactcgggaggctgaggcag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5243814 71 +   6154872 aaaaatac-aaaaaatcaacggggtgtggtggcacatgcctgtaatcccagctactcgggaggctgaggcag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74245404 72 + 122973662 aaaaatacaaaaaaatcaggggggcgtggtggcacatgcctgcaatcccagctactcgggaggccgaagcag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29422596 71 + 172585720 aaaaatac-aaaaaatcagcggggcgtggtagcacatgcctgtaatcccagctactcgggaggccgaggcag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29083809 71 - 170955103 aaaaatac-aaaaaatcagcggggcgtggtagcacatgcctgtaatcccagctactcgggaggccgaggcag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2073348 71 -   2996164 aaaaatac-aaaaaatcagcggggcgtggtagcacatgcctgtaatcccagctactcgggaggccgaggcag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1935688 71 -   2157725 aaaaatac-aaaaaatcagcggggcatggtagcacatgcctgtaatcccagctactcgggaggccgaggcag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28379163 71 -  71996105 aaaaatac-aaaaaatcagcggggcatggtagcacatgcctgtaatcccagctactcgggaggccgaggcag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2069241 71 +   2316924 aaaaatac-aaaaaatcagcggggcgtggtagcacatgcctgtaatcccagctactcgggtggccgaggcag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1938979 71 -   3067355 aaaaatac-aaaaaaacagcggggcgtggtagcacatgcctgtaatcccagctacttgggaggctgaggcag
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25953311 35 +  26524999 AAAAATGT--------------------------------TGTAAT-----TTACTCATGATATTGAGGCAG
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790            101477  0 -    302817 C
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1596564  0 -   2232465 C
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=617192.000000
s hg38.chr6_GL000254v2_alt    221651 111 +   4827813 gagaatcacttgaaccccagaggcagaggttgcagtgagccgagatcgtaccattgcactccagcttgggcaacaagagcgaaactccgtctc---------------aaacaaaacaaaacaaaa
s panTro5.chr6              29209145 116 + 175400573 gagaatcgcttgaaccccagaggcagaggttgcagtgagccgagatcgtaccattgcactccagcttgggcaacaagagcgaaactccgtctc----------aaacaaaacaaaacaaaacaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29443138 111 + 173848474 gagaatcgcttgaaccccagaggcagaggttgcagtgagccgagatcgtaccattgcactccagcttgggcaacaagagcgaaactccgtctc---------------aaacaaaacaaaacaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5243885 111 +   6154872 gagaatcgcttgaaccccagaggcagaggttgcagtgagccgagatcgcaccattgcactccagcttgggcaacaagagcgaaactccgtctc---------------aaacaaaacaaaacaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74245476 106 + 122973662 gagaatcacttgaaccccagaggcagaggttgcagtgagccgagattgcaccattgcactccagcttgggcaacaagagcgaaactccgtctc--------------------aaacaaaacgaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29422667 126 + 172585720 gagaatcacttgaaccccagaggcagaggttgctgtgagccgatatcgcgccattgcactctagtttgggcaacaagcggggaactccgtctcaaacaaaacaaaacaaaacaaaacaaaacaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29083880 126 - 170955103 gagaatcacttgaaccccagaggcagaggttgctgtgagccgatatcgcgccattgcactctagtttgggcaacaagcgcgaaactccgtctcaaacaaaacaaaacaaaacaaaacaaaacaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2073419 116 -   2996164 gagaatcacttgaaccccagaggcagaggttgctgtgagccgatatcgcgccattgcactctagtttgggcaacaagcgcgaaactccgtctc----------aaacaaaacaaaacaaaacaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1935759 116 -   2157725 gagaatcacttgaaccccagaggcagaggttgctgtgagccgagatcgcgccattgcactctagtttgggcaacaagcgcgaaactccgtctc----------aaacaaaacaaaacaaaacaaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28379234 121 -  71996105 gagaatcacttgaaccccagaggcagaggttgctgtgagccgagatcgcgccattgcactctagtttgggcaacaagcgcgaagctccgtctc-----aaacaaaacaaaacaaaacaaaacaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2069312 116 +   2316924 gagaatcacttgaaccccagaggcagaggttgctgtgagccgagatcgcgccattgcactctagtttgggcaacaagcgcgaaactccgtctc----------aaacaaaacaaaacaaaacaaaG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1939050 111 -   3067355 gagaatcgcttgaaccccagaggcagaggttgctgtgagccgagatcgcgccattgcactctagtttgggcaacaagcacgaaactccatctc---------------aaacaaaacaaaacaaaa
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            101477   0 -    302817 C
e canFam3.chr35             25953346   0 +  26524999 C
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1596564   0 -   2232465 C
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=51042.000000
s hg38.chr6_GL000254v2_alt    221762 8 +   4827813 caaaCAAC
s panTro5.chr6              29209261 8 + 175400573 caaaCAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29443249 8 + 173848474 caaaCAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5243996 8 +   6154872 caaaCAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74245582 8 + 122973662 caaaCAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29422793 8 + 172585720 caaaCAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29084006 8 - 170955103 caaaCAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2073535 8 -   2996164 caaaCAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1935875 8 -   2157725 caaaCAAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28379355 8 -  71996105 caaaCAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2069428 8 +   2316924 CAAACAAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1939161 8 -   3067355 caaaCAAC
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH561790            101477 8 -    302817 CAGGCCCC
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25953346 0 +  26524999 C
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1596564 0 -   2232465 C
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=309314.000000
s hg38.chr6_GL000254v2_alt    221770 46 +   4827813 ACTGCT-AAGAAGGATTGTGATTTGTTTACTGGTGATATTGAGGCTT
s panTro5.chr6              29209269 46 + 175400573 ACTGCT-AAGAAGGATTGTGATTTGTTTACTGGTGATATTGAGGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29443257 46 + 173848474 ACTGCT-AAGAAGGATTGTGATTTGTTTACTGGTGATATTGAGGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5244004 46 +   6154872 ACTGCT-AAGAAGGATTGTGATTTATTTACTGGTGATATTGAGGCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74245590 46 + 122973662 ACTGCT-AAGAAGGATTGTGATTTGCTTACTGGTGATATTGAGGCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29422801 46 + 172585720 ACTGCT-AAGAAGGACTGTGATTTGCTTACTGGTGATATTGAGGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29084014 46 - 170955103 ACTGCT-AAGAAGGACTGTGATTTGCTTACTGGTGATATTGAGGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2073543 46 -   2996164 ACTGCT-AAGAAGGACTGTGATTTGCTTACTGGTGATATCGAGGCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1935883 46 -   2157725 ATTGCT-AAGAAGGACTGTGATTTGCTTACTGGTGATATTGAGGCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28379363 46 -  71996105 ATTGCT-AAGAAGGACTGTGATTTGCTTACTGGTGATATTGAGGCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2069436 46 +   2316924 ATTGCT-AAGAAGGAAAGTGATTTGCTTACTGGTGATATTGAGGCTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1939169 46 -   3067355 ACTGCT-AAGAAGGACTGTGATTTGCTTACTGGTGATATTGAGGCTT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1596564 47 -   2232465 ACTGCTGAAAAAGGATTGTGATTTCTTTATGTGAGATATTGAAGCTT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH561790            101485 47 -    302817 ATGGCTAAAAAAAAATTAGGATTTGTTAATTTGTGATATGATCTTTT
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25953346  0 +  26524999 C
e saiBol1.JH378348            289377 32330 -    375362 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=459438.000000
s hg38.chr6_GL000254v2_alt    221816 57 +   4827813 TCATGGCTTAATGAGATTTATGGTCACTTTTTAGTTTCCTCAAAATGTGCAGAAAC----A
s panTro5.chr6              29209315 61 + 175400573 TCATGGCTTAATGAGATTTATGGTCACTTTTTAGTTTCCTCAAAATGTGCAGAAACACTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29443303 61 + 173848474 TCATGGCTTAATGAGATTTATGGTCACTTTTTAGTTTCCTCAAAATGTGCAGAAACACTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5244050 61 +   6154872 TCATGGCTTAATGAGATTTATGGTCACTTTTTAGTTTCCTCAAAATGTGCAGAAACACTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74245636 57 + 122973662 TCATGGCTTAATGAGATTTATGGCCACTTTTTAGTTTCCTCAAAATGTGCAGAAAC----A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29422847 57 + 172585720 TCATGGCTTATTGAGTTTTATGGTCACTTTTTAGTTTCCTCAAAATGTGCAGAAAC----A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29084060 57 - 170955103 TCATGGCTTATTGAGTTTTATGGTCACTTTTTAGTTTCCTCAAAATGTGCAGAAAC----A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2073589 57 -   2996164 TCATGGCTTATTGAGTTTTATGGTCACTTTTTAGTTTCCTCAAAATGTGCAGAAAC----A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1935929 57 -   2157725 TCATGGCTTATTGAGATTTATGGTCACTTTTTAGTTTCCTCAAAATGTGCAGAAAC----A
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28379409 57 -  71996105 TCATGGCTTATTGAGATTTATGGTCACTTTTTAGTTTCCTCAAAATGTGCAGAAAC----A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2069482 57 +   2316924 TCATGGCTTATTGAGATTTATAGTCACTTTTTAGTTTCCTCAAAATGTGCAGAAAC----A
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1939215 57 -   3067355 TCATGCCTTATTGAGATTTATGGTCACTTTTTAGTTTCCTCAAAATGTGCAGAAAC----A
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1596611 61 -   2232465 TTGTGGTTTATTGAGGTTTAGGGTAACTTTTTAGTTTCCTCAAAATAAGCAGAAGCACTTA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             25953346 61 +  26524999 TCATAGTTTATCAAGCCTTATGGTCACTGTTTACTATCTTCAAAATGTGTGGAAGCACTTA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            101532 57 -    302817 TCATGGTTTATTGAGGTTTATGGTCATTTTTTAGTTTCCTCAAAATATGtagaagt----a
i dasNov3.JH561790         C 0 I 511
e saiBol1.JH378348            289377 32330 -    375362 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=1238427.000000
s hg38.chr6_GL000254v2_alt    221873 169 +   4827813 ATAAGAATTTTCACTTTATAGAAACGAAAGGAGGTAGCCTCCTTAGAAATG---T---CTAAAGTTGACTATAATTATTGCTGGCCATAGG-ATAGATGTTAAAATGTTTACTTGGTGTAAAATCATATTTTCAAAATGTGGGACAAGAGGAATGCTATTCTCTAATTTGACAATA
s panTro5.chr6              29209376 169 + 175400573 ATAAGAATTTTCACTTTATAGAAACAAAAGGAGGTAGCCTCCTTAGAAATG---T---CTAAAGTTGACTATAATTATTGCTGGCCATAGG-ATAGATGTTAAAATGTTTACTTGGTGTAAAATCATATTTTCAAAATGTGGGACAAGAGGAATGCTATTCTCTAATTTGACAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29443364 169 + 173848474 ATAAGAATTTTCACTTTATAGAAACGAAAGGAGGTAGCCTCCTTAGAAATG---T---CTAAAGTTGACTATAATTATTGCTGGCCATAGG-ATAGATGTTAAAATGTTTACTTGGTGTAAAATCATATTTTCAAAATGTGGGACAAGAGGAATGCTATTCTCTAATTTGACAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5244111 169 +   6154872 ATAAGAATTTTCACTTTATAGAAACGAAAGGAGGTAGCCTCCTTAGAAATG---T---CTAAAGTTGACTATAATTATTGCTGGCCATAGG-ATAGATGTTAAAATGTTTACTTGGTGTAAAATCATATTTTCAAAGTGTGGGACAAGAGGAACGCTATTCTCTAATTTGACAATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74245693 169 + 122973662 TTAAGATTTTTCACTTTATAGAAATGAAAGGAGGTAGACTCCTTAGAAATG---T---CTAAAGTTGACTATCATTATTGCTGGCCATAGG-ATACATGTTAAAATGTTTACTTAGTGTAAAATCATATTTTCAAAGTGTGGGACAAGAGGAATGCTATTCTCTAATTTGAAAATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29422904 169 + 172585720 ATAAGATTTTTCACTTTATAGAAACGAAAGGAGGTAGCCTCCTTAGAAATG---T---CTAAAGTTGACTATCATTATTGCTGGCCATAGG-ATAGATGTTAAAATGTTTACTTGGTGTAAAATCATATTTTCAAAGTGTGGGACAAGAGGAATGCTATTCTCTAATTTGAAAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29084117 169 - 170955103 ATAAGATTTTTCACTTTATAGAAACCAAAGGAGGTAGCCTCCTTAGAAATG---T---CTAAAGTTGACTATCATTATTGCTGGCCATAGG-ATAGATGTTAAAATGTTTACTTGGTGTAAAATCATATTTTCAAAGTGTGGGACAAGAGGAATGCTATTCTCTAATTTGAAAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2073646 169 -   2996164 ATAAGATTTTTCACTTTATAGAAACGAAAGGAGGTAGCCTCTTTAGAAATG---T---CTAAAGTTGACTATCATTATTGCTGGCCATAGG-ATAGATGTTAAAAAGTTTACTTGGTGTAAAATCATATTTTCAAAGTGTGGGACAAGAGGAATGCTATTCTCTAATTTGAAAATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1935986 169 -   2157725 ATAAGATTTTTCACTTTATAGAAACGAAAGGAGGTAGCCTCCTTAGAAATG---T---CTAAAGTTGACTATCATTATTGCTGGCCATAGG-ATAGATGTTAAAATGTTTACTTGGTGTAAAGTCATATTTTCAAAGTGTGGGACAAGAGGAATGCTATTCTCTAATTTGAAAATA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28379466 169 -  71996105 ATAAGATTTTTCACTTTATAGAAACGAAAGGAGGTAGCCTCCTTAGAAATG---T---CTAAAGTTGACTATCATTATTGCTGGCCATAGG-ATAGATGTTAAAATGTTTACTTGGTGTAAAATCATATTTTCAAAGTGTGGGACAAGAGGAATGCTATTCTCTAATTTGAAAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2069539 169 +   2316924 GTAAGATTTTTCACTTTATTGAAACGAAAGGAGGTAGCCTCCTTAGAAATG---T---CTAAAGTTGACTATCATTATTGCTGGCCATAGG-ATAGATGTTAAAATGTTTACTTGGTGTAAAATCATATTTTCAAAGTGTGGGACAAGAGGAATGCTATTCTCTAATTTGAAAATA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1939272 169 -   3067355 ATAAGATTTTTCACTTTATAGAAATGAAAGGAGGTAGCCTCCTTAGAAATG---T---CTAAAGTTGACTATCATTATTGCTGGCCATAGG-ATAGATGTTAAAATGTTTACTTGGTGTAAAATCATATTTTCAAAGTGTGCGGCAAGAGGAATGCTATTCTCTAATTTGAAAATA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1596672 170 -   2232465 ATGATATTTTTTACTTTATAGAAATAAAAGGAAATAATTTC-TTAGATGTGCGCC---TAAAAGATGGAAACCAAAATTAATGGCCATTGA-AAAGATATTGAAATG-TGGCTTTTTATAAAATCACATTTTCAAAGTGTGGGACAAAAGAAATGCCCATCACTAATTTGAAAATA
i otoGar3.GL873742         C 0 I 280
s canFam3.chr35             25953407 170 +  26524999 AAGAAGTTTCTGGCTTTAGAGAAATGGAAGGAGATGGCTTTCTCAGGCGTG---TGCCTCCAAGATACCTAGCATAGTTGTGGGCCATAGGAAAAAATGTTAAAACATTGTTCTCCTGTAAAATCTTTACTTCCA---GTGGGATAAAAAGAATACCTTTCTCTAATTTGGAAACA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            102100 172 -    302817 ATGAGAGTTTTTACTTTTTGGAAATGGAAGCAATTAGCCTACCCAGACATG---TGTTTACAAGATAACAATTATTGTTGCAAGCCAGAGA-AAATAGGTTAAAATTTTGGTCTGCAATAAAATACTGTTTCCAATGTGTGGGACAAGAATACTGTGCTTCTCTAATTTGCAAACA
i dasNov3.JH561790         I 511 C 0
e saiBol1.JH378348            289377 32330 -    375362 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=120504.000000
s hg38.chr6_GL000254v2_alt    222042 18 +   4827813 TTTTAAGAGTGAGAATGG
s panTro5.chr6              29209545 18 + 175400573 TTTTAAGAGTGAGAATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29443533 18 + 173848474 TTTTAAGAGTGAGAATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5244280 18 +   6154872 TTTTAAGAGCGAGAATGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74245862 18 + 122973662 TTTTAGGAGTGAGAACGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29423073 18 + 172585720 TTTTAAGAGTGAGAATAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29084286 18 - 170955103 TTTTAAGAGTGAGAATAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2073815 18 -   2996164 TTTTAAGAGTGAGAATAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1936155 18 -   2157725 TTTTAAGAGTGAGAATAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28379635 18 -  71996105 TTTTAAGAGTGAGAATAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2069708 18 +   2316924 TTTTAAGAGTGAGAATAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1939441 18 -   3067355 TTTTAAGAGTGAGAATGG
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25953577 18 +  26524999 CTTTGAGGATGAAAATAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            102272 18 -    302817 CATTAAGGATGCAAATGC
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1596842 280 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=304754.000000
s hg38.chr6_GL000254v2_alt    222060 43 +   4827813 AGAAAAGA----ACTACCGTAAAACAGAAATTTATACTTTCATTTGT---------
s panTro5.chr6              29209563 43 + 175400573 AGAAAAGA----ACTACCGTAAAACAGAAATTTATACTTTCATTTGT---------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29443551 43 + 173848474 AGAAAAGA----ACTACCGTAAAACAGAAATTTATACTTTCATTTGT---------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5244298 43 +   6154872 AGAAAAGA----ACTACCGTAAAACAGAAATTTATACTTTCATTTGT---------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74245880 43 + 122973662 AGAAAAGA----ACTACTGTAAAACAGAAATTTATACTTTCATTTGT---------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29423091 43 + 172585720 AGAAAAGA----ACTACCGTAAAACAGAAATTTACAGTTTCATTTGT---------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29084304 43 - 170955103 AGAAAAGA----ACTACCGTAAAACAGAAATTTACAGTTTCATTTGT---------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2073833 43 -   2996164 AGAAAAGA----ACTACCGTAAAACAGAAATTTACAGTTTCATTTGT---------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1936173 43 -   2157725 AGAAAAGA----ACTACCGTAAAACAGAAATTTACAGTTTCATTTGT---------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28379653 43 -  71996105 GGAAAAGA----ATTACCGTAAAACAGAAATTTACAGTTTCATTTGT---------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2069726 43 +   2316924 AGAAAAGA----ACTACCGTAAAACAGAAATTTACAGTTTCATTTGT---------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1939459 43 -   3067355 AGAAAAGA----ACTACAGTAAAACAGAAATGTACAGTTTCATTTGT---------
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1597122 47 -   2232465 AGAAAAGAAAATACTACAGTAAAATAGAGATTTACACTTTCATTTAT---------
i otoGar3.GL873742         I 280 I 48697
s canFam3.chr35             25953595 42 +  26524999 TGAAAAGG----ACCGCGGTAAAACAGACATTTATATGCTCTTTCT----------
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            102290 52 -    302817 TGAACAGG----GTTATAAGAAAACAGAAATTTATATGTTTATTCTCTAATATTAT
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            289377 32330 -    375362 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=59880.000000
s hg38.chr6_GL000254v2_alt    222103 9 +   4827813 TTGACGTtg
s panTro5.chr6              29209606 9 + 175400573 TTGACGTtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29443594 9 + 173848474 TTGACGTtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5244341 9 +   6154872 TTGATGTtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74245923 9 + 122973662 TTGATGTtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29423134 9 + 172585720 TTGATGTtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29084347 9 - 170955103 TTGATGTtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2073876 9 -   2996164 TTGATGTtg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1936216 9 -   2157725 TTGATGTtg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28379696 9 -  71996105 TTGATGTtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2069769 9 +   2316924 TTGATGTtg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1939502 9 -   3067355 TCCATGTtg
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25953637 9 +  26524999 CCAGCGTTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            102342 9 -    302817 TTGATGTTA
i dasNov3.JH561790         C 0 C 0
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=339249.000000
s hg38.chr6_GL000254v2_alt    222112 58 +   4827813 tcgaagaaca--------aaatttcaacaca--cttaggt-------taaagatcagatcaacttttattggcaa
s panTro5.chr6              29209615 58 + 175400573 tcgaagaaca--------aaatttcaacaca--cttaggt-------taaagatcagatcaacttttattggcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29443603 58 + 173848474 tcgaagaaca--------aaatttcaacaca--cttaggt-------taaagatcagatcaacttttattggcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5244350 58 +   6154872 tcgaagaaca--------aaatttcaaaaca--cttaggt-------taaagatcagatcaacttttattggcaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74245932 58 + 122973662 tcgaagaaca--------aaatttcaacaca--cttaggt-------taaaggtcagatcaacttttattagcaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29423143 58 + 172585720 tcaaagaaca--------aaatttcaacaca--tttaggt-------taaagatcagatcaacttttattagcaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29084356 58 - 170955103 ccaaagaaca--------aaatttcaacaca--tttaggt-------taaagatcagatcaacttttattagcaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2073885 58 -   2996164 tcaaagaaca--------aaatttcaacaca--tttaggt-------taaagattagatcaacttttattagcaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1936225 58 -   2157725 tcaaagaaca--------aaatttcaacaca--cttaggt-------taaagatcagatcaacttttattagcaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28379705 58 -  71996105 tcaaagaaca--------aaatttcaacaca--cttaggt-------taaagatcagatcaacttttattagcaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2069778 58 +   2316924 tcaaagaaca--------aaatttcaacaca--cttaggt-------taaagatcagatcaacttttattagcaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1939511 58 -   3067355 tcaaagaaca--------aaatttcaacaca--cttaggt-------taaagatcagatcaacttttattagcaa
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25953646 75 +  26524999 TTTGATGATATGTCATGTAAATTGTGACAAAGGCTTATATATACACATACAGGAAAGACTAATTTTTGGTGGAAA
i canFam3.chr35            C 0 I 59
e dasNov3.JH561790            102351  0 -    302817 C
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=539722.000000
s hg38.chr6_GL000254v2_alt    222170 95 +   4827813 ttcatgaatcaggcagcatctcatctacaaaataggaaggtgctctgacgaggagatgagg-ttataggtagaaaaggctgaagaaactacaaaca
s panTro5.chr6              29209673 95 + 175400573 ttcatgaatcaggcagcatctcatctacaaaataggaaggtgctctgacgaggagatgagg-ttataggtagaaaaggttgaagaaactacaaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29443661 95 + 173848474 ttcatgaatcaggcagcatctcatctacaaaataggaaggtgctctgacgaggagatgagg-ttataggtagaaaaggttgaagaaactacaaaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5244408 95 +   6154872 ttcatgaatcaggcagcatctcatttacaaaataggaaggtgctctgacaaggagatgagg-ttatgggtagaaaaggttgaagaaactacaaaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74245990 96 + 122973662 ttcatgaatcaggcagcatctcatctacaaaataggaaggtgctctgacgaggagatgaggtttataggtagaaaaggttgaagaaactacaaaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29423201 96 + 172585720 tttatgaatcaggcagcatctcatctacgaaataagaaggtgctctgatgaggagatgaggtttataggtagaaaaggctgaagaaactgcaaaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29084414 96 - 170955103 tttatgaatcaggcagcatctcatctacgaaataagaaggtgctctgatgaggagatgaggtttataggtagaaaaggctgaagaaactgcaaaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2073943 96 -   2996164 tttatgaatcaggcagcatctcatctacgaaataagaaggtgctctgatgaggagatgaggtttataggtagaaaaggctgaagaaactacaaaca
i macNem1.NW_012011356v1   C 0 M 490
s cerAty1.NW_012001495v1     1936283 93 -   2157725 tttatgaatcaggcagcatctcatctacgaaataagaaggtgctctgat---gagatgaggtttataggtagaaaaggctgaagaaactacaaaca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28379763 96 -  71996105 tttatgaatcaggcagcatctcatctatgaaataagaaggtgctctgatgaggagatgaggtttataggtagaaaaggctgaagaaactacgaaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2069836 96 +   2316924 tttatgaatcaggcagcatctcatctacgaaataagaaggtgctctgatgaggagatgaggtttataggtagaaaaggctgaagaaactacaaaca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1939569 96 -   3067355 tttatgaatcaggcagcatctcatctacgaaataagaaggtgctctgatgaggagatgaggtttataggtagaaaaggctgcagaaactacaaaca
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            102351  0 -    302817 C
e canFam3.chr35             25953721 59 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=410310.000000
s hg38.chr6_GL000254v2_alt    222265 90 +   4827813 aggaacaataggtggattggtaattacaaagtgactgtccttgtaaggttaaagcagaggatacttccttaacatgctggctgaggtagt
s panTro5.chr6              29209768 90 + 175400573 aggaacaataggtggattggtaattacaaagtgactgtccttgtaaggttaaagcagaggatacttccttaaaatgctggctgaggtagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29443756 90 + 173848474 aggaacaataggtggattggtaattacaaagtgactgtccttgtaaggttaaagcagaggatacttccttaaaatgctggctgaggtagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5244503 90 +   6154872 aggaacaataagtggattggtaatttcaaagtgactgtccttgtaaggttaaagcagaggatacttccttaacatgctggctgaggtagt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74246086 90 + 122973662 aggaacaataagtggattggtaatttcaaagtgactttccttgtaaggttaaagcagaggatacttccttaacatgctggctgaggtagt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29423297 89 + 172585720 aggaacaataagtggattggtaatttcaaagtgactttccttgta-ggttaaagcagagaatacttccttatcatgctggctgaggtaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29084510 89 - 170955103 aggaacaataagtggattggtaatttcaaagtgactttccttgta-ggttaaagcagagaatacttccttatcatgctggctgaggtaga
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1936376 89 -   2157725 aggaacaataagtggattggtaatttcaaagtgactttccttgta-ggttaaagcagagaatacttccttatcatgctggctgaggtaga
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28379859 89 -  71996105 aggaacaataagtggattggtaatttcaaagtgacttttcttgta-ggttaaagcagagaatacttccttattatgctggctgaggtaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2069932 89 +   2316924 aggaacaataagtggattggtaatttcaaagtgactttccttgta-ggttaaagcagagaatacttccttatcatgctggctgaggtaga
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1939665 90 -   3067355 aggaacaataagtggattggtaatttcaaagtgactttccttttagggttaaagcagagaatacttccttatcatgctggttgaggtaga
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            102351  0 -    302817 C
e canFam3.chr35             25953721 59 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I
e macNem1.NW_012011356v1     2074039 490 -   2996164 M

a score=1082321.000000
s hg38.chr6_GL000254v2_alt    222355 188 +   4827813 ctggacccttttctactggttattgtgaatctcctgttttttggaaaactggcctgttttaaatttcagtttgattacttggcaccctgcacaaagggctcccttctggtttggtctggtctgttggagcctaatgcaggagctcattccaaaacaatagcctcccattaattttaACAATGTTATGT
s panTro5.chr6              29209858 188 + 175400573 ctggacccttttctactggttattgtgaatctcctgttttttggaaaactggcctgttttaaatttcagtttgattacttggcaccctgcacaaagggctcccttctggtttggtctggtctgttggagcctaatgcaggagctcattccaaaacaatagccttccattaattttaACAATGTTATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29443846 188 + 173848474 ctggacccttttctactggttattgtgaatctcctgttttttggaaaactggcctgttttaaatttcagtttgattacttggcaccctgcacaaagggctcccttctggtttggtctggtctgttggagcctaatgcaggagctcattccaaaacaatagccttccattaattttaACAATGTTATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5244593 187 +   6154872 ctggacccttttctactggttattgtgaatctcctg-tttttggaaaactggcctgttttaaatttcagtttgattacttggcaccctgcacaaagggctcccttctggtttggtctggtctgttggagcctaatgcaggagctcattccaaaacaatagcctctcattaattttaACAATGTTATGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74246176 188 + 122973662 ctggacccttttctactggttgttgtgaatctcctgttttttggaaaactgacctgttttaaagttcagtttgattacttggcaccctgcacaaagggctgccttctggtttgttctggtctgttggagcctagtgcaggagctcattccaaaacaatacactcccattaattttaACAATGTTATGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29423386 188 + 172585720 ctggacccttttctactggttgctgtgaatctcctgttttttggaaaactgacccattttaaagttcagtttgatcacttggtaccctgcacaagtgactcccttctggtttggtctggtctgttggaacctagtgcaggagttcattccaaaacaatagcctcccattaattttaACAATGTTATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29084599 188 - 170955103 ctggacccttttctactggttgctgtgaatctcctgttttttggaaaactgacccattttaaagttcagtttgatcacttggtaccctgcacaagtgactcccttctggtttggtctggtctgttggaacctagtgcaggagttcattccaaaacaatagcctcccattaattttaACAATGTTATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2074535 188 -   2996164 ctggacccttttctactggttgctgtgaatctcctgttttttggaaaactgacccattttaaagttcagtttgatcacttggtaccctgcacaagtgactcccttctggtttggtctggtctgttggaacctagtgcaggagttcattccaaaacaatagcctcccattaattttaACAATGTTATGT
i macNem1.NW_012011356v1   M 490 C 0
s cerAty1.NW_012001495v1     1936465 188 -   2157725 ctggacccttttctactggttgctgtgaatctcctgttttttggaaaactgacctattttaaaattcagtttgatcacttggtaccctgcacaagtgactcccttctggtttggtctggtctgttggaacctagtgcaggagttcattccaaaacaatagcctcccattaattttaACAATGTTATGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28379948 188 -  71996105 ctggacccttttctactggttgctgtgaatctcctgttttttggaaaactgacctattttaaagttcagtttgatcacttggtaccctgcacaagtgactcccttctggtttggtctggtctgttggaacctagtgcaggagttcattccaaaacaatagccttccattaattttaACAGTGTTATGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2070021 188 +   2316924 ctggacctttttctactggttgctgtgaatctcctgttttttggaaaactgacctattttaaagttcagtttgatcacttggtaccctgcacaagtgactcccttctggtttggtctggtctgttggaacctagtgcaggagttcattccaaaacaatagcctcccattaattttaACAATGTTATGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1939755 188 -   3067355 ctggacccttttctactggttgctctgaatctcctgttttttggaaaaccgacctgttttaaagttcagtttgatcacttggtaccctgcacaagtgactcccttctggtttggtctggtctgttggaacctagtgcaggagttcattccaaaacaatagcctcccattaattttaACAATGTTATGT
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            102351   0 -    302817 C
e canFam3.chr35             25953721  59 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=402884.000000
s hg38.chr6_GL000254v2_alt    222543 77 +   4827813 TATGTAGATTGTGACATAAAGATTCATACACTA-------------AGAAAAGATTC------TTTTTTTAAAAAAAAAAGACTGCTTCAGAATGC
s panTro5.chr6              29210046 77 + 175400573 TATGTAGATTGTGACATAAAGATTCATACACTA-------------AGAAAAGATTC------TTTTTTTAAAAAAAAAAGACTGCTTCAGAATGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29444034 77 + 173848474 TATGTAGATTGTGACATAAAGATTCATACACTA-------------AGAAAAGATTC------TTTTTTTTAAAAAAAAAGACTGCTTCAGAATGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5244780 77 +   6154872 TATGTAGATTGTGACATAAAGATTCATACACTA-------------AGAAAAGATTC------TTTTTTTTAAAAAAAAAGACTGCTTCAGAATGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74246364 76 + 122973662 TATGTAGATTGTGACATAAAGATTCATACACCA-------------AGAAAAGATTC------TTTTTTT-ACAAAAAAAGACTGCTTCAGAATGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29423574 75 + 172585720 TATGTAGATTGTGACATAAAGATTCATACACTA-------------AGAAAAGATTC--TTTTTTTTTTTA------AAAGACTGCTTCAGAATGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29084787 76 - 170955103 TATGTAGATTGTGACATAAAGATTCATACACTA-------------AGAAAAGATTC--TTTTTTTTTTTT-----AAAAGACTGCTTCAGAATGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2074723 75 -   2996164 TATGTAGATTGTGACATAAAGATTCATACACTA-------------AGAAAAGATTC--ATTTTTTTTTTT------AAAGACTGCTTCAGAATGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1936653 80 -   2157725 TATGTACATTGTGACATAAAGATTCATACACTA-------------AGAAAAAATTC--TGTTTTTTTTTT-TAAAAAAAGACTGCTTCAGAATGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28380136 83 -  71996105 TATGTAGATTGTGACATAAAGATTCATACACTA-------------AGAAAAGAttcttttttttttttttttttAAAAAGACTGCTTCAGAATGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2070209 81 +   2316924 TATGTAGATTGTGACACAAAGATTCATACACTA-------------AGAAAAAATTC--TTTTTTTTTTTTTTAAAAAAAGACTGTTTCAGAATGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1939943 78 -   3067355 TATGTAGATTGTGACATAAAGATTCATACACTA-------------AGAAAAGATTC-----TTTTTTTTAAAAAAAAAAGACTGCTTCAAAATAC
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH561790            102351 83 -    302817 TGTGTAGGTTGTGAC--AAAAACTCATATACCACTCCCCACCCCCCAAAAAAGACGT------TTTT-----GGAGGTAAGCCTGCTTCAGAATGG
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25953721 59 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=503725.000000
s hg38.chr6_GL000254v2_alt    222620  75 +   4827813 ----------------------------AAGTTAAATAGGACTTTATCAATCTC-TT-GCTAAAAATACAATTTATTTGGAATCCAAGCTTTGTTTCCCAAATTT
s panTro5.chr6              29210123  75 + 175400573 ----------------------------AAGTTAAATAGGACTTTATCAATCTC-TT-GCTAAAAATACAATTTATTTGGAATCCAAGCTTTGTTTCCCAAGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29444111  75 + 173848474 ----------------------------AAGTTAAATAGGACTTTATCAATCTC-TT-GCTAAAAATACAATTTATTTGGAATCCAAGCTTTGTTTCCCAAGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5244857  75 +   6154872 ----------------------------AAGTTAAATAGGACTTTATCAATCTC-TT-GCTAAAAATACAATTTATTTGGAATCCAAGCTTTGTTTCCCAAGTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74246440  75 + 122973662 ----------------------------AAGTTAAATAGGACTTTATCTATCTC-TT-GGTAAAACTGCAATTTATTTGGAATCCAAGCTTTGTTTCCCAAGTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29423649  75 + 172585720 ----------------------------AAGTTAAATAGGACTTTATCAATCTC-TT-GCTAAAAATACAATTTATTTGTAATCCAAGCTTTGCTTCCCAAGTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29084863  75 - 170955103 ----------------------------AAGTTAAATAGGACTTTATCAATCTC-TT-GCTAAAAATACAATTTATTTGTAATCCAAGCTTTGCTTCCCAAGTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2074798  75 -   2996164 ----------------------------AAGTTAAATAGGACTTTATCAATCTC-TT-GCTAAAAATACAATTTATTTGTAATCCAAGCTTTGTTTCCCAAGTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1936733  75 -   2157725 ----------------------------AAGTTAAATAGGACGTTATCAATCTC-TT-GCTAAAAATACAATTTATTTGGAATCCAAGCTTTGTTTCCCAAGTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28380219  75 -  71996105 ----------------------------AAGTTAAATAGGACTTTATCAATCTC-TT-GCTAAAAATACAATTTATTTGGAATCCAAGCTTTGTTCCCCAAGTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2070290  75 +   2316924 ----------------------------AAGTTAAATAGGACTTTATCAATCTC-TT-GCTAAAAATACAATTCATTTGGAATCTAAGCTTTGTTCCCCAAGttt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1940021  75 -   3067355 ----------------------------AAGTTAAATAGGACTTTATCAATCTC-TT-GCTAAAAATACAATTTATTTGGAATCCAAGCTTTGTTTCCCAAGTTT
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25953780  76 +  26524999 ----------------------------AAGTGAAACAAGACTCCCTTAGTTTCTTT-ACTAAAAGTATAACTTACTTAAAATCCAAGTTTTCTTTCACAAGTTC
i canFam3.chr35            I 59 C 0
s dasNov3.JH561790            102434 103 -    302817 AATAAAAAGGCACTAGAAGAGGGCAGGTCAGTTAAACAGGACTTTCTCAATTTC-TTCACTAAAACAATAACTTATTCAGAGTCCAGCTTTGATTTCAAGAGTT-
i dasNov3.JH561790         C 0 I 211
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=5634.000000
s hg38.chr6_GL000254v2_alt    222695 1 +   4827813 A
s panTro5.chr6              29210198 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29444186 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5244932 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74246515 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29423724 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29084938 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2074873 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1936808 1 -   2157725 A
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28380294 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2070365 1 +   2316924 a
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1940096 1 -   3067355 A
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             25953856 1 +  26524999 A
i canFam3.chr35            C 0 I 62863
e dasNov3.JH561790            102537 211 -    302817 I
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=1443257.000000
s hg38.chr6_GL000254v2_alt    222696 258 +   4827813 TCATTTAtttatttcattttatttattaatttttttgagatggagtctccctctgttgcccaggctggagtgctgtggtgcgatctcagctcgctgcaacAGTCTGCTATTGCTAGTAAGTAAAATACCGAGTATTCAATGCTCAAATGCTTTT-GTTGAGAGGATATTTAGTGTGATTTTATCACACTAGAATGATACCAGGAATCTAAGTAATATGGGCTTGATA--AGAGCAGAGCTGCAATTCAAAGTGAATTTTAC
s panTro5.chr6              29210199 255 + 175400573 TCATTTAtttatttcattttatttattaatttttttgagatggagtctccctctgttgcccaggctggagtgctgtggtgcgatctcagctcgctgcaacAGT---CTATTGCTAGTAAGTAAAATACTGAGTATTCAATGCTCAAATGCTTTT-GTTGAGAGGATATTTAGTGTGATTTTATCACACTAGAATGATACCAGGAATCTAAGTAATATGGGCTTGATA--AGAGCAGAGCTGCAATTCAAAGTGAATTTTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29444187 258 + 173848474 TCATTTAtttatttcattttatttattaatttttttgagatggagtctccctctgttgcccaggctggagtgctgtggtgcgatctcagctcgctgcaacAGTCTGCTATTGCTAGTAAGTAAAATACTGAGTATTCAATGCTCAAATGCTTTT-GTTGAGAGGATATTTAGTGTGATTTTATCACACTAGAATGATACCAGGAATCTAAGTAATATGGGCTTGATA--AGAGCAGAGCTGCAATTCAAAGTGAATTTTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5244933 259 +   6154872 TTATTTAtttatttcattttatttattaatttttttgagatggagtctccctctgttgcccaggctggagtgctgtggtgcgatctcagctcgctgcaacAGTCTGCTATTGCTAGTAAGTAAAATACTGAGTATTCAATGCTCAAATGCTTTTGGTTGAGAGGATATTTAGTGTGATTTTATCACACTAGAATGATACCAGGAATCTAAGTAATATGGGCTTGATA--AGAGCAGAGCTGCAATTCAAAGTGAATTTTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74246516 257 + 122973662 TTATTTAtttatttcattttatttattca-ttttttgagatggagtctccctctgttgcccaggctggagtgctgtggtgcgatctcggctagctgcaacAGCCTGCTATTGCCAGGAAGTAAAATACTGAGTATTAAATGCTCGAATGCTTTT-GTTGAGAGGATATTTAGTGTGATTTTATCACACTAGAATGATACCAGGAATCTAAGTCATATGGGCTTGATA--AGAGCAGAGCTGCAATTCAAAGTGAATTTTAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29423725 260 + 172585720 TTATTTAtttatttcattttatttatgtatttttttgagatggagtctccctctgttgcccaggctggagtactgtggtgcgatctcagcttgctgcaacAGCCTGCTATTGCTAGTAAGTTAGATACTGAGTATTCAATGCTCAAATGCTTTT-GTTGAGACGATATTTAGTGTGATTTTATCACACTAGAATGATACCAGGAATCTAAGTAATATGGGCTTGGTAAGAGAGCAGAGCTGCAATTCAAAGTGAATTTTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29084939 260 - 170955103 TTATTTAtttatttcattttatttatgtatttttttgagatggagtctccctctgttgcccaggctggagtactgtggtgcgatctcagcttgctgcaacAGCCTGCTATTGCTAGTAAGTTAGATACTGAGTATTCAATGCTCAAATGCTTTT-GTTGAGACGATATTTAGTGTGATTTTATCACACTAGAATGATACCAGGAATCTAAGTAATATGGGCTTGGTAAGAGAGCAGAGCTGCAATTCAAAGTGAATTTTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2074874 260 -   2996164 TTATTTAtttatttcattttatttatgtatttttttgagatggagtctccctctgttgcccaggctggagtactgtggtgcgatctcagcttgctgcaacAGCCTGCTATTGCTAGTAAGTTAGATACTGAGTATTCAATGCTCAAATGCTTTT-GTTGAGACGATATTTAGTGTGATTTTATCACACTAGAATGATACCAGGAATCTAAGTAATATGGGTTTGGTAAGAGAGCAGAGCTGCAATTCAAAGTGAATTTTAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1936809 260 -   2157725 TTATTTAtttatttcattttatttatttatttttttgagatggagtctccctctgttgcccaggctggagtactgtggtgcgatctcagcttgctgcaacAGCCTGCTATTGCTAGTAAGTTAGATACTGAGTATTCAATGCTCAAATGCTTTT-GTTGAGACGGTATTTAGTGTGATTTTATCACACTAGAATGATACCAGGAATCTAAGTAATATGGGCTTGATAAGAGAGCAGAGCTGCAATTCAAAGTGAATTTTAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28380295 260 -  71996105 TTATTTAtttatttcattttatttatttatttttttgagatggagtctccctctgttgcgcaggctggagtactgtggtgcgatctcagcttgctgcaacAGCCTGCTATTGCTAGCAAGTTAGATACTGAGTATTCAATGCTCAAATGCTTTT-GTTGAGACGATATTTAGTGTGATTTTATCACACTAGAATGATACCAGGAATCTAAGTAATATGGGCTTGATAAGAGAGCAGAGCTGCAATTCAAAGTGAATTTTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2070366 242 +   2316924 ------------------ttatttatttatttttttgagatggagtctccctctgttgcccaggctggagtactgtggtgcgatctcagcttgctgcaacAGCCTGCTATTGCTAGTAAGTTAGATACTGAGTATTCAATGCTCAAATGCTTTT-GTTGAGACGATATTTAGTGTGATTTTATCACACTAGAATGATACCAGGAATCTAAGTAATATGGGCTTGATAAGAGAGCAGAGCTGCAATTCAAAGTGAATTTTAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1940097 244 -   3067355 TTATTTATTTAtttcattttatttatttatttttttgagatggagtctccctctgttgcccaggctggagtactgtggtgcaatctcagcttgctgcaaCAGCCTGC----------------AATACTGAGTTTTCAATGCTCAAATGCTTTT-GTTGAGAGGATATTTAGTGTGATTTTATCACACTAGAATGATACCAGGAATCTAAGTAATATGGGCTTGGTAAGAGAGCAGAGCTGCAATTCAAAGTGAATTTTAT
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            102537 211 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=1375298.000000
s hg38.chr6_GL000254v2_alt    222954 225 +   4827813 CTTTGACTGTATTCAGTATTACCACTATATAAA-AGAAAATAAAGATGTCTTAAATGTTGCAGACAGG--------TCACAGAAAGAATATTGGAAAAAGAAACAGAAAGGGTAAAGATACTCGA-TTGTTTCATGCGACAGAAAGAA--ATGTCATTATTTTT---TATTAAATATAGGTAATATCTGCTTAAGTAGTTTTATTGTAGTTATGTTCTTCTTTTACATTCTTGTTGTATT
s panTro5.chr6              29210454 225 + 175400573 CTTTGACTGTATTCAGTATTACCACTATATAAA-AGAAAATAAAGATGTCTTAAATGTTGCAGACAGG--------TCACAGAAAGAATATTGGAAAAAGAAACAGAAAGGGTAAAGATACTCAA-TTGTTTCATGTGACAGAAAGAA--ATGTCATTATTTTT---TATTAAATATAGGTAATATCTGCTTAAGTAGTTTTATTGTAGTTATGTTCTCCTTTTACATTCTTGTTGTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29444445 225 + 173848474 CTTTGACTGTATTCAGTATTACCACTATATAAA-AGAAAATAAAGATGTCTTAAATGTTGCAGACAGG--------TCACAGAAAGAATATTGGAAAAAGAAACAGAAAGGGTAAAGATACTCAA-TTGTTTCATGCGACAGAAAGAA--ATGTCATTATTTTT---TATTAAATATAGGTAATATCTGCTTAAGTAGTTTTATTGTAGTTATGTTCTCCTTTTACATTCTTGTTGTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5245192 222 +   6154872 CTTTGACTGTATTCAGTATTACCACTATATAAA-AGAAAATAAAGATGTCTTAAATGTTGCAGACAGG--------TCACAGAAAGAATATTGGAAAAAGAAACAGAAAGGGTAAAGATACTCAA-TTGTTTCATGGGACAGAAAGAA--ATGTC---ATTTTT---TATTAAATATGGGTAATATCTGCTTAAGTAGTTTTATTGTAGTTATGttcttcttttacattcttgttgtatt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74246773 225 + 122973662 CTTTGACTGTATTCAGTATTACCACTATATAAA-AGAAAATAAAGATTTCTTAAATGTTGCAGACAGG--------TCACAGAAAGAATATTGGAAAAAGAAACAGAAAGGGTAAAGATACTCAA-TTGTTTCATGGGATAGAAAGAA--ATGTCATTATTTTT---TATTAAATATAGGTAATATCTGCTTAAGTAGTTTTATTGTAGTTATGTTCTTCTTTTGCATTCTTGCTGTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29423985 226 + 172585720 CTTTGACTGTATTCAGTATTACCACTATATTAA-AGAAAATAAAGATGTCTTAAATGTTGCAGACAGA--------TCACAGAAAAAATATTGGAAAAAGAAACAGAAAGGGTAAAGATACTCAA-TTGTTTCATGGAACAGAAAGAA--ATGCCATTTTTTTTT--CATTAAATATAGGTAATATCTGCTTAAGTAGTTTTATTGTAGTTATGTTCTTCTTTTACATTCTTATTGTATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29085199 226 - 170955103 CTTTGACTGTATTCAGTATTACCACTATATTAA-AGAAAATAAAGATGTCTTAAATGTTGCAGACAGA--------TCACAGAAAAAATATTGGAAAAAGAAACAGAAAGGGTAAAGATACTCAA-TTGTTTCATGGAACAGAAAGAA--ATGCCATTTTTTTTT--CATTAAATATAGGTAATATCTGCTTAAGTAGTTTTATTGTAGTTATGTTCTTCTTTTACATTCTTATTGTATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2075134 225 -   2996164 CTTTGACTGTATTCAGTATTACCACTGTATTAA-AGAAAATAAAGATGTCTTAAATGTTGCAGACAGA--------TCACAGAAAAAATATTGGAAAAAGAAACAGAAAGGGTAAAGATACTCAA-TTGTTTCATGGAACAGAAAGAA--ATGCCA-TTTTTTTT--CATTAAATATAGGTAATATCTGCTTAAGTAGTTTTATTGTAGTTATGTTCTTCTTTTACATTCTTATTGTATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1937069 226 -   2157725 CTTTGACTGTATTCAGTATTACCACTATATTAA-AGAAAATAAAGATGTCTTAAATGTTGCAGACAGA--------TCACAGAAAAAATATTGGAAAAAGAAACAGAAAGGGTAAAGATACTCAA-TTGTTTCATGGAACAGAAAGAA--ATGCCATTTTTTTTT--CATTAAATATAGGTAATATCTGCTTAAGTAGTTTTATTGTAGTTATGTTCTTCTTTTACATTCTTATTGTATT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28380555 225 -  71996105 CTTTGACTGTATTCAGTATTACCACTATATTAA-AGAAAATAAAGATGTCTTAAATGTTGCAGACAGA--------TCACAGAAAAAATATTGGAAAAAGAAGCAGAAAGGGTAAAGATACTCAA-TTGTTTCATGGAACAGAAAGAA--ATGCCATTTTTTTT---CATTAAATATAGGTAATATCTGCTTAAGTAGTTTTATTGTAGTTATATTCTTCTTTTACATTCTTACTGTATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2070608 226 +   2316924 CTTTGACTGTATTCAGTATTACCACTATATTAA-AGAAAATAAAGATGTCTTAAATGTTGCAGACAGA--------TCACAGAAAAAATATTGGAAAAAGAAACAGAAAGGGTAAAGATACTCAA-TTGTTTCATGGAACAGAAAGAA--ATGCCATTTTTTTTC--CATTAAATATAGGTAATATCTGCTTAAGTAGttttattgtagttatgttcttcttttacattcttattgtatt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1940341 225 -   3067355 CTTTGACTGTATTCAGTATTACCACTCTATTAA-AGAAAATAAAGATGTCTTAAATGTTGCAGACAGA--------TCACAGAAAAAATATTGGAAAAAGAAACAGAAAGGGTAAAGATACTCAATTTGTTTCACAGAACAGAAAGAA--GTGCCATTTTTTT----CATTAAATATAGGTAATATCTGCTTAAGTAGTTTTATTGTAGTTATGTTCTTCTTTTACATTCTTACTGTATT
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH561790            102748 226 -    302817 CTTTGATTTTATCCAGTTTTAGCACTACTTGAAGAAAAAAAAAAGACATTCTAAAGACTTCAGGCAGCTCAGCAGTTCAGAGAAGTAACATTGGGAAATGAAAC----AGGGTAGAAATATTCTA-CTGTATAACGGGACAGGAAGAAGCATGTCATTGTTATTTCACATTAAATATAGGTAATAAATGTTTAAGTAGTAC--TCGTATTTAT-------TTTTATGTTCTTATTGTATT
i dasNov3.JH561790         I 211 I 62185
e canFam3.chr35             25953857 62863 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=1233840.000000
s hg38.chr6_GL000254v2_alt    223179 229 +   4827813 TTACGTTTTTGTATTTATGTTTTTCATTTATTAATGCGCCTTAAAGTTGAAATAATATAGCCTATGAGACTTAAATATCCAAT----AGTTTTAAAAAGTTAAAATAAATCACTACATAAGAGAACAGATAGAAATACTAAAAACATATTGTTATATTTTTCCCAAACATATTATTTATGTAATTAGTCCTATTATAAATTACTTCTAATTGCCATTATTAACTACTCCTATt
s panTro5.chr6              29210679 229 + 175400573 TTACGTTTTTGTATTTATGTTTTTCATTTATTAATGTGCCTTAAAGTTGAAATAATATAGCCTATGAGACTTAAATATCCAAT----AGTTTTAAAAAGTTAAAATAAATCACTACATAAGAGAACAGATAGAAATACTAAAAACATATTGTTATATTTTTCCCAAACATATTATTTATGTAATTAGTCCTATTATAAATTACTTCTAATTGCCATTATTAACTACTCCTATt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29444670 229 + 173848474 TTACGTTTTTGTATTTATGTTTTTCATTTATTAATGTGCCTTAAAGTTGAAATAATATAGCCTATGAGACTTAAATATCCAAT----AGTTTTAAAAAGTTAAAATAAATCACTACATAAGAGAACAGATAGAAATACTAAAAACATATTGTTATATTTTTCCCAAACATATTATTTATGTAATTAGTCCTATTATAAATTACTTCTAATTGCCATTATTAACTACTCCTATt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5245414 229 +   6154872 ttacgtttttgtatt--tgtttttcctttATTAATGTGCCTTAAAGTTGAAATAATGTAGCCTATGAGACTTAAATATCCAATAA--AGTTTTAAAAAGTTAAAATAAATCACTACATAAGAGAACAGATAGAAATACTAAAAACATATTGTTATATTTTTCCCAAACATATTATTTATGTAATTAGTCCTATTATAAATTACTTCTAATTGCCATTATTAACTACTCCTATt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74246998 233 + 122973662 TTACATTTTTGTATTTATGTTTTTCCTTTATTAATGTGCCTTAAAGTTGAAATAATATAGCCTATGAGACTTAAATATCCAATAAAGAGTTTTAAAAAGTTAAAATAAATCACCACATAAGAGAACAGATAGAAATACTAAAAACATATTGTTATATTTTTCCCAAACATATTATTTATGTAATTAGTCCTACTATAAATTACTACTAATTGCCATTATTAACTACTCCTATT
i nomLeu3.chr1a            C 0 I 53257
s rheMac8.chr4              29424211 226 + 172585720 TTACATTTTTGTATTTATGTTTTTCCTTTATTAACGTACCTTAAAGTTGAAATAATATAGCCTATGAGACTTAAATATCCAATACAGAGTTTTAAAAAGT-----TAAATCACTGCAT--GAGAACAGATAAAAATAATAAAAACATATTGTTATATTTTTCCCAAACATATTATTTATGTAATTAGCCCTACTATAAATTACTACTAATTGCGATTATTAACTAGTCCTATT
i rheMac8.chr4             C 0 I 43164
s macFas5.chr4              29085425 226 - 170955103 TTACATTTTTGTATTTATGTTTTTCCTTTATTAACGTACCTTAAAGTTGAAATAATATAGCCTATGAGACTTAAATATCCAATAAAGAGTTTTAAAAAGT-----TAAATCACTGCAT--GAGAACAGATAAAAATAATAAAAACATATTGTTATATTTTTCCCAAACATATTATTTATGTAATTAGCCCTACTATAAATTACTACTAATTGCCATTATTAACTAGTCCTATT
i macFas5.chr4             C 0 I 43064
s macNem1.NW_012011356v1     2075359 226 -   2996164 TTACATTTTTGTATTTATGTTTTTCCTTTATTAACATACCTTAAAGTTGAAATAATATAGCCTATGAGACTTAAATATCCAATAAAGAGTTTTAAAAAGT-----TAAATCACTGCAT--GAGAATAGATAAAAATAATAAAAACATATTGTTATATTTTTCCCAAACATATTATTTATGTAATTAGCCCTACTATAAATTACTACTAATTGCCATTATTAACTAGTCCTATT
i macNem1.NW_012011356v1   C 0 I 43087
s cerAty1.NW_012001495v1     1937295 226 -   2157725 TTACATTTTTGTATTTATGTTTTTCCTTTATTAACGTACCTTAAAGTTGAGATAATATAGCCTATGAGACTTAAATATCCAATAAAGAGTTTAAAAAAGT-----TAAATCACTGCAT--GAGAACAGATAGAAATACTAAAAACATATTGTTATATTTTTCCCAAACATATTATTTATGTAATTAGCCCTACTATAAATTACTACTAATTGCCATTATTAACTAGTCCTATT
i cerAty1.NW_012001495v1   C 0 I 43646
s chlSab2.chr17             28380780 222 -  71996105 TTACATTTTTGTATTTATGTTTTTCCTTTATTAACGTACCTTAAAGTTGAAATAATATAGCCTATGAGACTTAAATATCCAAT----AGTTTTAAAAAGT-----TAAATCACTGCAT--GAGAACAGATAGAAATACTAAAAACATATTGTTATATTTTTCCCAAACATATTATTTATGTAATTAGCCCTACTATAAATTACTACTAATTGCCATTATTAACTAGTCCTATT
i chlSab2.chr17            C 0 I 43270
s manLeu1.NW_012104165v1     2070834 226 +   2316924 ttacattattgtatttatgtttttcctttattAACGTACCTTAAAGTTGAAATAATATAGCCTGTGAGACTTAAATATCCAATAAAGAGTTTAAAAAAGT-----TAAATCACTGCAT--GAGAACAGATAGAAATACTAAAAACATATTGTTATATTTTTCCCAAACATATTATTTATGTAATTAGCCCTACTATAAATTACTACTAATTGCCATTATTAACTAGTCCTATT
i manLeu1.NW_012104165v1   C 0 I 51575
s colAng1.NW_012115566v1     1940566 226 -   3067355 TTACATTTTTGTATTTATGTTTTTCCTTTATTAACGTACCTTAAAGTTGAAATAATATAGCCTATGAGACTTAAATATCCAATAAAGAGTTTTAAAAAAT-----TAAATTACTGCAT--GAGAACAGATAGAAATACTAAAAACATATTGTTATCTTTTTCCCAAACATATTATTTATGTATTTAGCCCTACTATAAATTACTACTAATTGCCATTATTAACTAGTCCTATT
i colAng1.NW_012115566v1   C 0 I 47878
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I

a score=77963.000000
s hg38.chr6_GL000254v2_alt    223408 140 +   4827813 gagaggtgacagcatgctggcagtcctcagagccctcgcttgctctcggcacctcccctgcctgggctcccactttggtggcatttgaggagcccttcagcccccccactgcactgtgggagcccctttctgggctggcc
s panTro5.chr6              29210908 140 + 175400573 gagaggtgacagcatgctggcagtcctcagagccctcgcttgctctcggcacctcctctgcctgggctcccactttggtggcatttgaggatcccttcagcccccccactgcactgtgggagcccctttctgggctggcc
i panTro5.chr6             C 0 I 41258
s panPan2.chr6              29444899 140 + 173848474 gagaggtgacagcatgctggcagccctcagagccctcgcttgctcttggcacctcccctgcctgggctcccactttggtggcatttgaggatcccttcagcccccccactgcactgtgggagcccctttctgggctggcc
i panPan2.chr6             C 0 I 53340
s gorGor5.CYUI01015250v1     5245643 140 +   6154872 gagaggtgacagcatgctggcagtcctcagagccctcgcttgctctcggcacctcccctgcctgggctcccactttggtggcatttgaggagcccttcagccccctcactgtactgtgggatcccctttctgggctggcc
i gorGor5.CYUI01015250v1   C 0 I 52922
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I
e colAng1.NW_012115566v1     1940792 47878 -   3067355 I
e manLeu1.NW_012104165v1     2071060 51575 +   2316924 I
e chlSab2.chr17             28381002 43270 -  71996105 I
e cerAty1.NW_012001495v1     1937521 43646 -   2157725 I
e macNem1.NW_012011356v1     2075585 43087 -   2996164 I
e macFas5.chr4              29085651 43064 - 170955103 I
e rheMac8.chr4              29424437 43164 + 172585720 I
e nomLeu3.chr1a             74247231 53257 + 122973662 I

a score=0.000000
s hg38.chr6_GL000254v2_alt    223548 53599 +   4827813 [encoded data, 53599 characters]
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e saiBol1.JH378348            289377 32330 -    375362 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I
e colAng1.NW_012115566v1     1940792 47878 -   3067355 I
e manLeu1.NW_012104165v1     2071060 51575 +   2316924 I
e chlSab2.chr17             28381002 43270 -  71996105 I
e cerAty1.NW_012001495v1     1937521 43646 -   2157725 I
e macNem1.NW_012011356v1     2075585 43087 -   2996164 I
e macFas5.chr4              29085651 43064 - 170955103 I
e rheMac8.chr4              29424437 43164 + 172585720 I
e nomLeu3.chr1a             74247231 53257 + 122973662 I
e gorGor5.CYUI01015250v1     5245783 52922 +   6154872 I
e panPan2.chr6              29445039 53340 + 173848474 I
e panTro5.chr6              29211048 41258 + 175400573 I

a score=35190.000000
s hg38.chr6_GL000254v2_alt    277147 8 +   4827813 GGCCAAGC
s panTro5.chr6              29252306 8 + 175400573 GGCCAAGC
i panTro5.chr6             I 41258 C 0
s panPan2.chr6              29498379 8 + 173848474 GGCCAAGC
i panPan2.chr6             I 53340 C 0
s gorGor5.CYUI01015250v1     5298705 8 +   6154872 GGCCAAGC
i gorGor5.CYUI01015250v1   I 52922 C 0
s nomLeu3.chr1a             74300488 8 + 122973662 GGCCAAGC
i nomLeu3.chr1a            I 53257 C 0
s cerAty1.NW_012001495v1     1981167 8 -   2157725 GGCCAAGC
i cerAty1.NW_012001495v1   I 43646 C 0
s chlSab2.chr17             28424272 8 -  71996105 GGCCAAGC
i chlSab2.chr17            I 43270 C 0
s manLeu1.NW_012104165v1     2122635 8 +   2316924 GGCCAAGC
i manLeu1.NW_012104165v1   I 51575 C 0
s colAng1.NW_012115566v1     1988670 8 -   3067355 GGCCAAGC
i colAng1.NW_012115566v1   I 47878 C 0
s saiBol1.JH378348            321707 8 -    375362 GGCCAAGC
i saiBol1.JH378348         I 32330 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e aotNan1.NW_018494050v1      219094 32024 -    285216 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I
e macNem1.NW_012011356v1     2075585 43087 -   2996164 I
e macFas5.chr4              29085651 43064 - 170955103 I
e rheMac8.chr4              29424437 43164 + 172585720 I

a score=5005.000000
s hg38.chr6_GL000254v2_alt    277155 1 +   4827813 T
s panTro5.chr6              29252314 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29498387 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5298713 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74300496 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     1981175 1 -   2157725 T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28424280 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2122643 1 +   2316924 T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1988678 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378348            321715 1 -    375362 T
i saiBol1.JH378348         C 0 I 2
s aotNan1.NW_018494050v1      251118 1 -    285216 T
i aotNan1.NW_018494050v1   I 32024 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e calJac3.chr4             171465734 33778 - 171630274 I
e macNem1.NW_012011356v1     2075585 43087 -   2996164 I
e macFas5.chr4              29085651 43064 - 170955103 I
e rheMac8.chr4              29424437 43164 + 172585720 I

a score=42482.000000
s hg38.chr6_GL000254v2_alt    277156 7 +   4827813 GATTCAG
s panTro5.chr6              29252315 7 + 175400573 GATTCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29498388 7 + 173848474 GATTCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5298714 7 +   6154872 GATTCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74300497 7 + 122973662 GATTCGG
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     1981176 7 -   2157725 GATTCAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28424281 7 -  71996105 GATTCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2122644 7 +   2316924 GATTCAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1988679 7 -   3067355 GATTCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171499512 7 - 171630274 GATTCAG
i calJac3.chr4             I 33778 C 0
s saiBol1.JH378348            321718 7 -    375362 GATTCAG
i saiBol1.JH378348         I 2 C 0
s aotNan1.NW_018494050v1      251119 7 -    285216 GATTCAG
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e cebCap1.NW_016108108v1      285596 32701 -    373274 I
e macNem1.NW_012011356v1     2075585 43087 -   2996164 I
e macFas5.chr4              29085651 43064 - 170955103 I
e rheMac8.chr4              29424437 43164 + 172585720 I

a score=1446345.000000
s hg38.chr6_GL000254v2_alt    277163 254 +   4827813 ACAGCACAGCTTCCCGGTGTCTGCAGGGCTGGACCAAAGAGAAGA--------------GTCTTCCGCGGGTGCTAGAAAAGCGAAGCACGCGTTACCATGGAGACTGCGGAATGGAAAAGCGTTCGGTTTCTTGTTTCCTAGCCGCGAATGGGGTCGTGGTTCCTTCGACCTCGCCTGGGGAGAAAGGGGACGGAGGGCTTCGGGCTATACTTGGGCCACACAGCCGGGAAGCTGAGGCCGCGGGGCAGGTCTGCGTGGCGGCGTCG-
s panTro5.chr6              29252322 254 + 175400573 ACAGCACAGCTTCCCGGGGTCTGCAGGGCTGGACCAAAGAGAAAA--------------GTCTTCCGCGGGTGCTAGAAGAGCGAAGCACGCGTTACCATGGAGACTGCGGAATGGAAAAGCGTTCGATTTCTTGTTTCCTAGCCGCGAATGGGGTCGTGGTTCCTTCGACCTCGCCTGGGGAGAAAGGGGCCGGAGGGCTTCGGGCTATACTTCGGCCACACAGCTGGGAAGCTGAGGCCGCGGGGCAGGTCTGCGTGGCGGCGTCG-
i panTro5.chr6             C 0 I 1
s panPan2.chr6              29498395 254 + 173848474 ACAGCACAGCTTCCCGGGGTCTGCAGGGCTGGACCAAAGAGAAAA--------------GTCTTCCGCGGGTGCTAGAAGAGCGAAGCACGCGTTACCATGGAGACTGCGGAATGGAAAAGCGTTCGATTTCTTGTTTCCTAGCCGCGAATGGGGTCGTGGTTCCTTCGACCTCGCCTGGGGAGAAAGGGGCCGGAGGGCTTCGGGCTATACTTCGGCCACACAGCTGGGAAGCTGAGGCCGCGGGGCAGGTCTGCGTGGCGGCGTCG-
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01015250v1     5298721 254 +   6154872 ACAGCACAGCTTCCCGGGGTCTGCAGGGCTGGACCAAAGAGAAGA--------------GTCTTCCGCGGGTGCTAGAAGAGCGAAGCACGCGTTACCATGGAGACTGCGGAATGGAAAAGCGTTCGGTTTCTTGTTTCCTAGCCGCGAATGGGGTCGTGATTCCTTCGACCTCGCCTGGGGAGAAAGGGGCCGGAGGGCTTCGGGCTATACTTCGGCCACACAGCCGGGAAGCTGAGGCCGCGGGGCAGGTCTGCGTGGCGGCGTCG-
i gorGor5.CYUI01015250v1   C 0 I 1
s nomLeu3.chr1a             74300504 254 + 122973662 ACACCACAGCTTCCCGGGATCTGCAGGGCTGGACCAAAGAGAAGA--------------GTCTTCCGCGGGTGCTAGAAGAGCGAAGCACGCGTTACCAAGGAGACTGCGGAATGGAAAAGCGTTCGGTTTCTTGTTTCTTAGCCGCGAATGGGGTCGTGGTTCCTTCGACCTCGCCTGGGGAGAAAGGGGCGGGAGGGCTTCGGGCTATACTTCGGCCACACAGCCGGGAAGCTGAGGCCGCGGGGCAGGTCCGCGTGGCGGCGTCG-
i nomLeu3.chr1a            C 0 I 1
s cerAty1.NW_012001495v1     1981183 249 -   2157725 ACAGCACAGCTTCCCGGGCTCTGCGGGGCTGGACCAAAGAGAAGA--------------GTCCTCCGCGGGTGCTAGAAGAGCGAGGCACGTGTTACCATGGAGGCTGCGGAATGGAAAAACGTTCGGTTTCTTGTTTCTTAGCCGCGTGTGGGGTCGTGGTTCCTTCGACTTCGCCTGGGGAGAAGGGGGCGGGAGGGCTTTGGGGTATACTTTGGCCACACAGTCGGCAAGCTGAGGCCGCG-----GGCCCGCGTGGCGGCGTCG-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28424288 254 -  71996105 ACAGCACAGCTTCCCGGGCTCTGCGGGGCTGGACCAAAGAGAAGA--------------GTCCTCCGCGGGTGCTAGAAGAGCGAAGCACGTGTTACCATGGAGGCTGCGGAATGGAAAAACGTTCGGTTTTTTGTTTCTTAGCCGCGTATGGGGTCGTGGTTCCTTCGACTTCGCCTGGGGAGAAGGGGGCGGGAGGGCTTTGGGGTATACTTTGGCCACACAGCCGGGAAGCTGAGGCCGCGGGGCAGGTCCGCGTGGCGGCGTCG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2122651 249 +   2316924 ACAGCACAGCTTCCCGGGCTCTGTGGGGCTGGACCAAAGAGAAGA--------------GTCCTCCGCGGGTGCTAGAAGAGCGAGGCACGTGTTACCATGGAGGCTGCGGAATGGAAAAACGTTCGGTTTCTTGTTTCTTAGCCGCGTGTGGGGTCGTGGTTCCTTCGACTTCGCCTGGGGAGAAGGGGGCGGGAGGGCCTTGGGGTATACTTTGGCCACACAGTCGGCAAGCTGAGGCCGCG-----GGCCCGCGTGGCGGCGTCG-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1988686 253 -   3067355 ACAGCACAGCTTCCCGGGCTCTGCGGGGCTGGACCAAAGAGAAGA--------------GTCCTCCGC-TGTCCTAGAAGAGCGAAGCACGTGTTACCATGGAGGCTGCGGAATGGAAAAACGTTCGGTTTTTTGTTTCTTGGCCGCGTATGGGGTCGTGGTTCCCTCGACTTCGCCTGGGGAGAAGGGGGCGGGAGGGCTTTGGGATATACTTTGGCCACACAGCCGGGAACCTGAGGCTGCGGGGCAGGTCCGCGTGGCGTCGTCG-
i colAng1.NW_012115566v1   C 0 I 6464
s calJac3.chr4             171499519 252 - 171630274 ACAGCACAGCTTTCTGGAGTCTGCAGGGCTAGACCAAAGGGAATA--------------GTCCTCCGCGGAGCCTAGAAGGGCAAAGCACGCATTACCGTGGAGAC-GCGGAATGGAAAAGCGTTCGGTTTCTTGTCTACGAGCCGCGGATGGGGTCGTGATTTCTTCGACCTCGCC-GCAGAGAAGGGGGCGGGAGGTCTTTGGACTATACTTGGGCCACACCGCGGGTAAGATGAGGCCGCAGAGCAGGTCCTCGTGGAGG-GTGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            321725 267 -    375362 ACAGCACAGCTTTCTGGAGTTTGCAGGGCTAGACCAAAGGGAGGAGGGCTAGACCAAAGGTCCTCTGCGGATCCTAGAAGGGCGAAGCACGCGTTACCATGGAGACTGCGGAATGGAAAAGCCTTCGGGTTCTTGTCTGTGATCCGCGGATGGGGTCGTGATTCCTTCGACCTCGCA-GTGGAGAAGCGGGCGGGAGGTCTTCGGACTATACTTTGGCCACACCACGGGGAAGCTGAGGCCACGGAGCAGGTCCTCGTGGAGG-ATGGG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      318297 253 -    373274 ACAGCACAGCTTTCTGGAGTTTGCACGGCTAGACCAAAGGGAAGA--------------GTCCTCTGCGGATCCTAGAAGGCCGAAGCACGCGTTATCATGGAGACTGCGGAACGGAAAAGCGTTAGGTTTCTTGTCTACGAGCCGCGGATGGGGTCGTGATTCCTTCGACCTCGCA-GTGGAGAAGGGAGCGGCAGGTCTTCGGACTATACTTTGGCCGCACTGCGGGGAAGCTGAGGCCACAGAGCAGGTCCTCGTGGAGG-GTGGG
i cebCap1.NW_016108108v1   I 32701 C 0
s aotNan1.NW_018494050v1      251126 247 -    285216 ACAGTACAGCTTTCTGGAGTCTGCAGGGCT-----AAAGGGAAGA--------------GTCCTTCGC-GATCCTAGAAGGGCGAAGCACGCGTTACCATGGAGACTGCAGAATGGAAAAGCGTTCGGTTTCTTGTCTACTATCCGCAGATGGGGTCGTGATTCCTTCGACCTCGCC-GCGGAGAAAGGGGCGGGAAGTCTTCGGACTATACTTCGGCCACACCTCGGGGAAGCTGAGGCCGCGGAGCAGGTCCTCGTGGAGG-GTGGG
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e macNem1.NW_012011356v1     2075585 43087 -   2996164 I
e macFas5.chr4              29085651 43064 - 170955103 I
e rheMac8.chr4              29424437 43164 + 172585720 I

a score=659471.000000
s hg38.chr6_GL000254v2_alt    277417 143 +   4827813 AGTCCGAGCGGGGAAGCCC-----------CT-TTG----------CGGGAACTCTGGGGCGGGGCGGGGCGGGGAGGTGGGTAGGGAGGGTCCCGCCAGCAGAGGCATCTTATTTTTAACCTCTTCTCGGCTGTTTTTCTCTCGTCCATTTGCT-CTCCTCCTTT
s panTro5.chr6              29252577 143 + 175400573 AGTCCGAGCGGGGAAGCCC-----------CT-TTG----------CGGGAACTCTGGGGCGGGGCGGGGCGGGGAGGTGGGTAGAGAGGGTCCCGCCAGCAGAGGCATCTTATTTTTGACCACTTCTCGGCTGTTTTTCTCTCGTCCATTTGCT-CTCCTCCTTT
i panTro5.chr6             I 1 C 0
s panPan2.chr6              29498650 143 + 173848474 AGTCCGAGCGGGGAAGCCC-----------CT-TTG----------CGGGAACTCTGGGGCGGGGCGGGGCGGGGAGGTGGGTAGAGAGGGTCCCGCCAGCAGAGGCATCTTATTTTTGACCACTTCTCGGCTGTTTTTCTCTCGTCCATTTGCT-CTCCTCCTTT
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01015250v1     5298976 143 +   6154872 AGTCCGAGCGGTGAAGCCC-----------CT-TTG----------CGGGAACTGTGGGGCGGGGCGGGGCGGGGAGGTGGGTAGAGAGGGTCCCGCCAGCAGAGGCATCTTATTTTTGACCACTTCTCGGCTGTTTTTCTCTCGTCCATTTGCT-CTCCTCCTTT
i gorGor5.CYUI01015250v1   I 1 C 0
s nomLeu3.chr1a             74300759 144 + 122973662 AGTCCGGGCGGGAAAGCCC-----------CT-TTG----------CGTGAACTCTGAGGCGGGGTGGGGCGGGGAGGTGGGTAGAGAGGGCCCCGCCAGCAGAGGCATTTTATTTTTAACCTCTTCTCGGCTGCTTTTCTCTCGTCCATTTGCTCCTCCTCCTTT
i nomLeu3.chr1a            I 1 C 0
s cerAty1.NW_012001495v1     1981432 155 -   2157725 GATCCGGGCGTGGAAGCCCCTTCGCTGGAGCT-TTG----------CTGAAGCTCTGGGGCGGGGCGGGGCGGGAAGGTGGGTAGAGAGGGTCCTGCCTGCAGAGGCATCTTATTTTTAACCTCTTCTCGGCTGTTTTTCTCTCCTCCATTTGCTCCTTCTCCTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28424542 139 -  71996105 GATCCGGGCGTGGAAGCCC-----------CT-TTG----------CTGGAGCTCTGGGGCGGGGCGGGG-----AGGTGGGTAGAGACGGTCCCGCCTGCAGAGGCAACTTATTTTTAACCTCTTCTCGGCTGTTTTTCTCTCCTCCATTTGCTCCTCCTCCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2122900 150 +   2316924 GATCCGGGCGTGGAAGCCCCTTTGCTGGAGCT-TTG----------CTGGAGCTCTGGGGCGGGGCGGGG-----AGGTGGGTAGAGAGGGTCCCGCCTGCAGAGGCATCTTATTTTTAACCTCTTCTCGGCTGTTTTTCTCTCCTCCATTTGCTCCTTCTCCTTT
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171499771 154 - 171630274 AGTCCGGGCAGGGAAGCCC-----------CTCCTGCTTCCCCGCTCTGGAGCTCTGGGGCGGGTCGGGGCGTGGAGGTGGGTGGAGAGGATCCCGCCTGCAGAAGCATCTTATTTTTATCCTCTTCTCGGCTGTTTTTCTCTCCTCCATTTGTTTCTCCTTCTC-
i calJac3.chr4             C 0 I 1
s saiBol1.JH378348            321992 141 -    375362 AGTCCGGCCGGGGAAGCCC-----------CTCCTG----------CGGGAGCTCTGGACTGGG-CGGGGTGTGGAGGTGGGTAGAGAGGATCCCGCCTGCAGAAGCATCTTATTTTTATCCTCTTCTCGGCTGTttttcttt--ttcttttcttttcttttctt-
i saiBol1.JH378348         C 0 I 11491
s cebCap1.NW_016108108v1      318550 144 -    373274 AGTCCGGCCGGGGAAGCCC-----------CTCCTG----------CCGGAGCTCTGGGGCGGGGCGGGGCGTGGAGGTGGGTAGAGAGGATCCCACCTGCAGAAGCATCTTATTTTTATCCTCTTCTCGGCTGTTTTTCTCTCCTCCGTTTGTTACTCCGTCTT-
i cebCap1.NW_016108108v1   C 0 I 1
s aotNan1.NW_018494050v1      251373 144 -    285216 AGTCCGGGCGGGGAAGCCT-----------CTCCTG----------CTGGAGCTCTGGGGCGGGGCGGGGCGTGGAGGTGGGTAGAGAGGATCCCGCCTGCAGAAGCATCTTATTTTTATCCTCTTCTCGGCTGTTTTTCTCTCCTCCATTTGTTTCTCCTTCTT-
i aotNan1.NW_018494050v1   C 0 I 1
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e colAng1.NW_012115566v1     1988939 6464 -   3067355 I
e macNem1.NW_012011356v1     2075585 43087 -   2996164 I
e macFas5.chr4              29085651 43064 - 170955103 I
e rheMac8.chr4              29424437 43164 + 172585720 I

a score=210529.000000
s hg38.chr6_GL000254v2_alt    277560 45 +   4827813 AAGCCATCCTTTAATATTAAACATTAAAAAA-TATATTTGGCAaac
s panTro5.chr6              29252720 45 + 175400573 AAGCCATCCTTTAATATTAAACATTTAAAAA-TATATTTGGCAaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29498793 45 + 173848474 AAGCCATCCTTTAATATTAAACATTTAAAAA-TATATTTGGCAaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5299119 45 +   6154872 AAGCCATCCTTTAATATTAAACATTTAAAAA-TATATTTGGCAaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74300903 45 + 122973662 AAGCCATCCTTTAATATTAAACATTAAAAAA-TGTATTTGGCAagc
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     1981587 46 -   2157725 AAGCCATCCTTTAATATTAAACATTAAAAAAGTATATTTGGCAaac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28424681 46 -  71996105 AAGCCATCCTTTAATATTAAACATTAAAAAAGTATATTTGGCAaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2123050 46 +   2316924 AAGCCATCCTTTAATATTAAACATTAAAAAAGGATATTTGGCAaac
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171499926 45 - 171630274 AAGCCATCCtttaatattaaacattaaaaaa-tatatttGGCAAAC
i calJac3.chr4             I 1 C 0
s cebCap1.NW_016108108v1      318695 45 -    373274 AAGCCATCCTTTAATATTAAACATTAAAAAA-TATATTTGGCAAAC
i cebCap1.NW_016108108v1   I 1 I 8058
s aotNan1.NW_018494050v1      251518 45 -    285216 AAGCCATCCTTTAATATTAAACATTAAAAAA-TATATTTGGCAAAC
i aotNan1.NW_018494050v1   I 1 I 8430
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e saiBol1.JH378348            322133 11491 -    375362 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e colAng1.NW_012115566v1     1988939 6464 -   3067355 I
e macNem1.NW_012011356v1     2075585 43087 -   2996164 I
e macFas5.chr4              29085651 43064 - 170955103 I
e rheMac8.chr4              29424437 43164 + 172585720 I

a score=20496.000000
s hg38.chr6_GL000254v2_alt    277605 7 +   4827813 atttgaa
s panTro5.chr6              29252765 7 + 175400573 atttgaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29498838 7 + 173848474 atttgaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5299164 7 +   6154872 atttgaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74300948 7 + 122973662 atttgaa
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     1981633 7 -   2157725 atttgaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28424727 7 -  71996105 atttgaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2123096 7 +   2316924 atttgaa
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171499971 7 - 171630274 TTTTAAA
i calJac3.chr4             C 0 I 8770
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e saiBol1.JH378348            322133 11491 -    375362 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e aotNan1.NW_018494050v1      251563 8430 -    285216 I
e cebCap1.NW_016108108v1      318740 8058 -    373274 I
e colAng1.NW_012115566v1     1988939 6464 -   3067355 I
e macNem1.NW_012011356v1     2075585 43087 -   2996164 I
e macFas5.chr4              29085651 43064 - 170955103 I
e rheMac8.chr4              29424437 43164 + 172585720 I

a score=404727.000000
s hg38.chr6_GL000254v2_alt    277612 177 +   4827813 tagagcgcgcttattctgggtcaggtgtcgttttaaatgctttatgtgtgctaactcatttaattctcaaacaatccaatggggtaagtattatcattatcccaatttttagatag----------gcctggagaagataataaacttaccaacagtgtcacagctggtaagttgagggtgggaaac
s panTro5.chr6              29252772 177 + 175400573 tagagggcgcttattctgggtcaggtgtcgttttaaatgctttatgtgtgctaactcatttaattctcaaacaatccaatggggtaagtattatcattatcccaatttttagatag----------gcctggagaagataataaacttgccaacagtgtcacagctggtaagttgagggtgggaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29498845 176 + 173848474 tagagggcgcttattctgggtcaggtgtcgttttaaatgcttt-tgtgtgctaactcatttaattctcaaacaatccaatggggtaagtattatcattatcccaatttttagatag----------gcctggagaagataataaacttgccaacagtgtcacagctggtaagttgagggtgggaaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5299171 177 +   6154872 tagagggcgcttattctgggtcaggtgtcgttttaaatgctttatgtgtgctaactcatttaattctcaaacaatccaatggggtaagtattatcattatcccaatttttagatag----------gcctggagaagataataaacttgccaacagtgtcacagctggtaagttgagggtgggaaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74300955 167 + 122973662 tagagcgcaattattctgggtcaggtgtcgttttaaatgctt--tatgtgctaactcatttaattctcaaacaatccagtggggtaggtattatcattattcaaatttttagatag----------gcctggagaaaataagaaacttgccaacagtgtcac--------agttgagggtgggaaac
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     1981640 187 -   2157725 tagagcgcgcttattctgggtcaggtgtcgttttaaatgctttatgtgtgtcaactcatttaatgctcaaacaatccaatggggtaggtattatcattatcccaatttttagataggcaacctgaggcctggaaaagataataaacttgcccacagtgtcaccgctggcgagttgaggatgggacac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28424734 187 -  71996105 tagagcgcgcttattctgggtcaggtgtcgttttaaatgctttatgtgtgtcaactcatttaatgctcaatcaatccaatagggtaggtattatcattatcccaatttttagataggcaacctgaggcctggaaaagataataaacttgcccacagtgtcacagctggtgagttgaggatgggacac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2123103 187 +   2316924 tagagcgcgcttattctgggtcaggtgtcgttttaaatgctttatgtgtgtcaactcatttaatgctcaaacaatccaatggggtaggtattatcattatcccaatttttagataggcaacttgaagcctggaaaagataataaacttgcccacagtgtcacagctggcgagttgaggatgggacac
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e saiBol1.JH378348            322133 11491 -    375362 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e aotNan1.NW_018494050v1      251563 8430 -    285216 I
e cebCap1.NW_016108108v1      318740 8058 -    373274 I
e calJac3.chr4             171499978 8770 - 171630274 I
e colAng1.NW_012115566v1     1988939 6464 -   3067355 I
e macNem1.NW_012011356v1     2075585 43087 -   2996164 I
e macFas5.chr4              29085651 43064 - 170955103 I
e rheMac8.chr4              29424437 43164 + 172585720 I

a score=8633.000000
s hg38.chr6_GL000254v2_alt    277789 2 +   4827813 cc
s panTro5.chr6              29252949 2 + 175400573 cc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29499021 2 + 173848474 cc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5299348 2 +   6154872 cc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74301122 2 + 122973662 cc
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29128715 2 - 170955103 cc
i macFas5.chr4             I 43064 C 0
s cerAty1.NW_012001495v1     1981827 2 -   2157725 cc
i cerAty1.NW_012001495v1   C 0 I 5833
s chlSab2.chr17             28424921 2 -  71996105 cc
i chlSab2.chr17            C 0 I 1684
s manLeu1.NW_012104165v1     2123290 2 +   2316924 cc
i manLeu1.NW_012104165v1   C 0 I 6022
s calJac3.chr4             171508748 2 - 171630274 ct
i calJac3.chr4             I 8770 C 0
s saiBol1.JH378348            333624 2 -    375362 ct
i saiBol1.JH378348         I 11491 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e aotNan1.NW_018494050v1      251563 8430 -    285216 I
e cebCap1.NW_016108108v1      318740 8058 -    373274 I
e colAng1.NW_012115566v1     1988939 6464 -   3067355 I
e macNem1.NW_012011356v1     2075585 43087 -   2996164 I
e rheMac8.chr4              29424437 43164 + 172585720 I

a score=808.000000
s hg38.chr6_GL000254v2_alt    277791 1 +   4827813 c
s panTro5.chr6              29252951 1 + 175400573 c
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29499023 1 + 173848474 c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5299350 1 +   6154872 c
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74301124 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29128717 1 - 170955103 c
i macFas5.chr4             C 0 C 0
s calJac3.chr4             171508750 1 - 171630274 t
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            333626 1 -    375362 t
i saiBol1.JH378348         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e aotNan1.NW_018494050v1      251563 8430 -    285216 I
e cebCap1.NW_016108108v1      318740 8058 -    373274 I
e colAng1.NW_012115566v1     1988939 6464 -   3067355 I
e manLeu1.NW_012104165v1     2123292 6022 +   2316924 I
e chlSab2.chr17             28424923 1684 -  71996105 I
e cerAty1.NW_012001495v1     1981829 5833 -   2157725 I
e macNem1.NW_012011356v1     2075585 43087 -   2996164 I
e rheMac8.chr4              29424437 43164 + 172585720 I

a score=1888.000000
s hg38.chr6_GL000254v2_alt    277792 1 +   4827813 g
s panTro5.chr6              29252952 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29499024 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5299351 1 +   6154872 g
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74301125 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29128718 1 - 170955103 t
i macFas5.chr4             C 0 C 0
s calJac3.chr4             171508751 1 - 171630274 g
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            333627 1 -    375362 g
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      259993 1 -    285216 g
i aotNan1.NW_018494050v1   I 8430 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e cebCap1.NW_016108108v1      318740 8058 -    373274 I
e colAng1.NW_012115566v1     1988939 6464 -   3067355 I
e manLeu1.NW_012104165v1     2123292 6022 +   2316924 I
e chlSab2.chr17             28424923 1684 -  71996105 I
e cerAty1.NW_012001495v1     1981829 5833 -   2157725 I
e macNem1.NW_012011356v1     2075585 43087 -   2996164 I
e rheMac8.chr4              29424437 43164 + 172585720 I

a score=287933.000000
s hg38.chr6_GL000254v2_alt    277793 40 +   4827813 gcCTAACACATATATTTTCTTTTTATGTTCTGTAAGGATT
s panTro5.chr6              29252953 40 + 175400573 gcCTAACACATATATTTTCTTTTTATGTTCTGTAAGGATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29499025 40 + 173848474 gcCTAACACATATATTTTCTTTTTATGTTCTGTAAGGATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5299352 40 +   6154872 gcCTAACACATATATTTTCTTTTTATGTTCTGTAAGGATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74301126 34 + 122973662 gCCTGACACATACA------TTTTATGTTCTCTAAGGATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29467601 40 + 172585720 gccTAACACATATATTTTCTTTTCATGTTCTCTAAGGATT
i rheMac8.chr4             I 43164 C 0
s macFas5.chr4              29128719 40 - 170955103 gccTAACACATATATTTTCTTTTCATGTTCTCTAAGGATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2118672 40 -   2996164 gccTAACACATATATTTTCTTTTCATGTTCTCTAAGGATT
i macNem1.NW_012011356v1   I 43087 C 0
s manLeu1.NW_012104165v1     2129314 40 +   2316924 gccTAACACATATTTTTTCTTTTCATGTTCTCTAAGGATT
i manLeu1.NW_012104165v1   I 6022 C 0
s colAng1.NW_012115566v1     1995403 40 -   3067355 gccTAACACATATATTTTCTTTTCATGTTCTGTAAGGATT
i colAng1.NW_012115566v1   I 6464 C 0
s calJac3.chr4             171508752 40 - 171630274 gccTAGCATATATATTTTCTTTTTATGTTCTCTAAGGTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            333628 40 -    375362 gccTAGCACATATATTTTCTTTTTATGTTCTTTAAGGTTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      326798 40 -    373274 GCCTAGCACATATATTTTCTTTTTATGTTCTCTAAGGTTT
i cebCap1.NW_016108108v1   I 8058 C 0
s aotNan1.NW_018494050v1      259994 40 -    285216 gccTAGCACATATATTTTCTTTTTATGTTCTCTAAGGTTT
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1597169 48697 -   2232465 I
e chlSab2.chr17             28424923 1684 -  71996105 I
e cerAty1.NW_012001495v1     1981829 5833 -   2157725 I

a score=1758534.000000
s hg38.chr6_GL000254v2_alt    277833 223 +   4827813 GGGATCCTTTTCATTTTATTAGACAGAAAAGGACAGTTAGCACTGTCATTGAaccctcaacatggtatgatctcttgagaagat--taagcagccatttggtggcagattgatcactttgaaccctttctattaat------accttgcagtgggcagagactcatccttatagggatttgtatgtattccaggtataattttgct-tccctgtctccaatgcccctgctaa
s panTro5.chr6              29252993 224 + 175400573 GGGATCCTTTTCATTTTATTAGACAGAAAAGGACAGTTAGCACTGACATTGAaccctcaacatggtatgatctcttgagaagat--taagcagccatttggtggcagattgatcactttgaaccctttctattaat------accttgcagtgggcagagactcatccttatagggatttgtatgcattccaggtataattttgccatccctgtctccaatgcccctgctaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29499065 224 + 173848474 GGGATCCTTTTCATTTTATTAGACAGAAAAGGACAGTTAGCactgacattgaaccctcaacatggtatgatctcttgagaagat--taagcagccatttggtggcagattgatcactttgaaccctttctattaat------accttgcagtgggcagagactcatccttatagggatttgtatgcattccaggtataattttgccttccctgtctccaatgcccctgctaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5299392 224 +   6154872 GGGATCCTTTTCATTTTATTAGACAGAAAAGGACAGTTAGCACTGACATTGAACcctcaacatggtatgatctcttgagaagat--taagcagccatttggtggcagattgatcactttgaaccctttctattaat------accttgcagtgggcagagactcatccttatagggatttgtatgtattccaggtataattttgccttccctgtctccaatgcccctgctaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74301160 220 + 122973662 GGGATCCTTTTCATTTTATTAGACAGAAAAG--CAGTTAGCACTGACGTTGAACCCTCAACATGGTATGATCTCTTGAGAAGAT--TAAGCAGCCATTCGATGGCAGATTGATCACTTTGAACCCTTTCTGTTAAT------ACCTTGCAGTGGGC--CCACTCATCATTGCAGGGATTTATATGTATTCCAGGTATAATTTTGCCTTCCCCATCTCCAATGCCCCTGCTAA
i nomLeu3.chr1a            C 0 I 1411
s rheMac8.chr4              29467641 230 + 172585720 GGGATTCTTTTCATTTTCTCAGACCGGAAAGGACAGTTAGCactgacattgaacactcaacatggtatgatctcttgagaagat--taagcagcgatttggtggcagattgatcacttcgaaccctttttattaatggggtgggtttgaagtgggcagagactcatccttatagggatttatatgcattccaggtacagttttgccttccctgtctccaatgcctgtgctaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29128759 230 - 170955103 GGGATTCTTTTCATTTTCTCAGACCGGAAAGGACAGTTAGCactgacattgaacactcaacatggtatgatctcttgagaagat--taagcagcgatttggtggcagattgatcacttcgaaccctttttattaatggggtgggtttgaagtgggcagaaactcatccttatagggatttatatgcattccaggtacagttttgccttccctgtctccaatgcctgtgctaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2118712 230 -   2996164 GGGATTCTTTTCATTTTCTCAGACCGGAAAGGACAGTTAGCactgacattgaacactcaacatggtatgatctcttgagaagat--taagcagcaatttggtggcagattgatcacttcgaaccctttttattaatgggatgggtttgaagtgggcagagactcatccttatagggatttatatgcattccaggtacagttttgccttccctgtctccaatgcctgtgctaa
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     2129354 224 +   2316924 GGGATTCTTTTCATTTTCTCAGACCGGAAAGGACAGTTAGCACTGACATTGAACActcaacatggtatgatctcttgagaagat--taagcagcgatttggtggcagattgatcacttcaaactctttttattaat------accttgcagtgggcagagactcatccttatagggatttatatgcattcctggtatagttttgccttccctgtctccaatgcccctgctaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1995443 224 -   3067355 GGGATTCTTTTCATTTTCTCAGACTGGAAAGGACAGTTAGCACTCacattgaacactcaacatggtatgatctcttgagaagat--taagcagcgatttggtggcagattgatcacttcgaacccttctgattaat------accttgcagtgggcagagactcatccttatagggatttatatgcattctaggtatagttttgccttccctgtctccaatgcccctgctaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171508792 224 - 171630274 GGGATTCTTTTCATTTTCTCGGACAGAAAAGGACAGTTAGCactgacattgaaccctcaacatggtatgatcctttgagaagat--gaagcagccctttggtggcagattgatcacttggaactctttctattaat------accttgtagtgggcagagactcatccttatagggatttatatgtattccaggtataactttgccttccctgtctccaatgcccctgctaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            333668 224 -    375362 GGGATTCTTTTCATTTTCTTGGACAGAAAAGAACAGTTAGCactgacattgaaccctccacgtggtatgctcctttgagaagat--taagcagccatttggtggcagattgatcactttgaactctttctattaat------accctatagtgggcagagactcatccttatcgggatttatatgtattccaggtatagctttgccttccctgtctccaatgcccctgctaa
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      326838 206 -    373274 GGGATTCTTTTCATTTTCTTGGACAGAAAAGGACAGTTAGCACTGACATTGAACACTCCACATGGTATGCTCCTTTGATAAGAT--TAAGCAGCCATTTGGTGGCAGATTGATCACTTCGAACTCTTTCTATTAAT------ACCTTGTAGTGGGC--AGACTCATCCTTATAGGGATTTCTATGTATTCCAGGTATAGCTTTGCCTT----------------CCTGCTAA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      260034 220 -    285216 GGGATTCTTTTCATTTTCTCGGACAGAAAAAGAC----AGCactgacattgaaccctcaacatggtatgatcctttgagaagat--taagcagccatttggtggcagattgatcactttgaactctttctattaat------accttgtagtgggcagagactcatccttatacggatttatatgtattccaggtatagctttgccttccctgtctccagtgcccctgctaa
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1645866 212 -   2232465 GGGATACTTTTTATTTTCTCAGAGAGGAAAGAATGGTTTTC-CTGACTCTGAACCCTCCACAGGATATGATCTTTTGAGAAGATAATAACAAGCCA-------ACGGAttgatcactttgcaccctttct------------accttgctatgagcagagactaatccttatagggatttatatgtattccaggtatagttttaccttccctatctctagttcctcagctaa
i otoGar3.GL873742         I 48697 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e chlSab2.chr17             28424923 1684 -  71996105 I
e cerAty1.NW_012001495v1     1981829 5833 -   2157725 I

a score=1765223.000000
s hg38.chr6_GL000254v2_alt    278056 216 +   4827813 ---tactacccaaggactcacaatgtctgatgtactgacatggaaccttgccttacatctcagaccaagggactcactttactgtgaaggatgtgttacaaagggcacatgatcatgggatctactggtcctaccttattctatattacacagaaatgg-cagcctgTTTTTCCCCAGCTTTGCCAACATAATAATTAGCAAAACTTTTTAATTATATGA
s panTro5.chr6              29253217 216 + 175400573 ---tactacccaaggactcacaatgtctgatgtactgacatggaaccttgtcttacatctcagaccaagggactcactttactgtgaagaatgtgttacaaagggcacatgatcatgggatctactggtcctaccttattctatattacacagaaatgg-cagcctgTTTTTCCCCAGCTTTGCCAACATAATAATTAGCAAAACTTTTTAATTATATGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29499289 216 + 173848474 ---tactacccaaggactcacaatgtctgatgtactgacgtggaaccttgtcttacatctcagaccaagggactcactttactgtgaagaatgtgttacaaagggcacatgatcatgggatctactggtcctaccttattcTATATTACACAGAAATGG-CAGCCTGTTTTTCCCCAGCTTTGCCAACATAATAATTAGCAAAACTTTTTAATTATATGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5299616 216 +   6154872 ---tactacccaaggactcacaatgtctgatgtactgacatggaaccttgtcttacatctcagaccaagggactcactttactgtgaagaatgtgttacaaagggcacatgatcatgggatctactggtcctaccttattctatattacacagaaatgg-cagcctgTTTTTCCCCAGCTTTGCCAACATAATAATTAGCAAAACTTTTTAATTATATGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74302791 216 + 122973662 ---Tactacccaaggactcacaatgtctgatgtactgacatggaaccttgtcttacatctcagactaagggactcactttactgtgaaggatgtgttacaaagggcacatgatcatgggatctactggtcctaccttattctatattacacagaaatgg-cagcctgTGTTTCCCCAGCGTTGCCAACATAATAATTAGCAAAACTTTTTAATTATATGA
i nomLeu3.chr1a            I 1411 C 0
s rheMac8.chr4              29467871 216 + 172585720 ---tactacccaaggactcacaatgtctgatgtattgacatggaactttgccttacatctcagaccaagggactcactttactgtgaaggatgtgttacaaagggcacatgatcatgggatctactggtcctaccttattttatatcacacagaaatgg-cagcCTATTTCCCTCCAGCTTTGCCAACATAATGATTAGCAAAACCTTTTAATTATGTGA
i rheMac8.chr4             C 0 I 13
s macFas5.chr4              29128989 216 - 170955103 ---tactacccaaggactcacaatgtctgatgtattgacatggaactttgccttacatctcagaccaagggactcactttactgtgaaggatgtgttacaaagggcacatgatcatgggatctactggtcctaccttattttatatcacacagaaatgg-cagcCTATTTCCCTCCAGCTTTGCCAACATAATGATTAGCAAAACCTTTTAATTATGTGA
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1     2118942 216 -   2996164 ---tactacccaaggactcacaatgtctgatgtattgacatggaactttgccttacatctcagaccaagggactcactttactgtgaaggatgtgttacaaagggcacatgatcatgggatctactggtcctaccttattttatatcacacagaaatgg-cagcCTATTTCCCTCCAGCTTTGCCAACATAATGATTAGCAAAACCTTTTAATTATGTGA
i macNem1.NW_012011356v1   C 0 I 13
s manLeu1.NW_012104165v1     2129578 216 +   2316924 ---tactacccaaggactcacaatgtctgatgtattgacatggaactttgccttacatctcagaccaagggtctcactttactgtgaaggatgtgctacaaagggcacatgatcatgggatctactggtcctaccttattttatatcacacagaaatgg-cagcctgTTTTCCCCCAGCTTTGCCAACATAATAATTAGCAAAACCTTTTAATTATGTGA
i manLeu1.NW_012104165v1   C 0 I 13
s colAng1.NW_012115566v1     1995667 216 -   3067355 ---tactacccaaggactcacaatgtctgatgtactgatatggagctttgccttacatctcagaccaagggactcactttactgtgaaggatgtgttacaaagggcacatgatcatggtatctactggtcgtaccttattttatatcacacagaaatgg-cagcCTGTTTCCTCCCAGCTTTGCCAACATAATAATTAGCAAAACCTTTTAATTATGTGA
i colAng1.NW_012115566v1   C 0 I 13
s calJac3.chr4             171509016 211 - 171630274 ---taccacccaaggactcacaatgtc----atactgacaaggaatcttgcctaacatctcagaccaagggactcacttcactgtgaaggatgcgttacaaagggcacatgatcacaggatctatt-gtcctgccttattctatatcacacggaaatggccagcctgTTTCTCCTCAGCTTTGCCAACATAATACTTAGTGAAACCTTTTAattatatg-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            333892 212 -    375362 ---taccacccaaggactcacaatgtc----atactgacaaggaatcttgcctaacatctcagaccaagggactcgctttactgtgaaggatgcgttagaaagggcacatgatcgtaggatctactggtcctgccttattctacatcacacagaaatggcCAgcctgtttcccctcagctttgccaacataataattagttaaaccttttaattATATG-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      327044 211 -    373274 ---TACCACCCAAGGACTCACAATGTC----ATACTGACAAGGAATCTTGCCTAACATCTCAGACCAAGGGACTTGCTTTACTGTGGAGGATGCGTTAGAAAGGGCACATGATCGTAGGATCTGCTGGTCCTGCCTTATTCTACATCACACAGAAATGGCCAGCCTGTTTCCTTTCAGCTTTGCCAACATAATAATTAGTGAAACC-TTTAATTATATG-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      260254 212 -    285216 ---taccatccaaggactcacaatgtc----atactgacaaggaatcttgcctaacatctcagaccaagggactcactttactgtgaaggatgcgttacaaagggcacatgatcataggatctactggtcctgccttattctacatcacacagaaatggcCAgcctgtttcccctcagctttgccaacataataattagtgaaaccttttaattATATA-
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1646078 217 -   2232465 catcaccacccaaagactcacagtgtctgatacactggcatgagatcttgcctaacatctcagaccaacagacccactttactatgaagagtatgttacaaaggacacatgattatgggatctactggtcctggtgcattttacaccacacagaaatggccagcctATTTCCCCACAGCTTTGCCAACATAA---TTAGCTCCACCTTTTTATTATATGA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e chlSab2.chr17             28424923 1684 -  71996105 I
e cerAty1.NW_012001495v1     1981829 5833 -   2157725 I

a score=71769.000000
s hg38.chr6_GL000254v2_alt    278272 23 +   4827813 TAAtatatttcaggaagaaaaca
s panTro5.chr6              29253433 23 + 175400573 TAAtatatttcaggaagaaaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29499505 23 + 173848474 TAATATATTTCAGGAAGAAAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5299832 23 +   6154872 TAAtatatttcaggaagaaaaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74303007 23 + 122973662 TAAtatatttcaggaagaaaaca
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29129207 11 - 170955103 -----TAATTGTGAAA-------
i macFas5.chr4             I 2 C 0
s calJac3.chr4             171509227 21 - 171630274 --acatatttcaggaagaaaaca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            334104 21 -    375362 --ATATATTTCAGGAAGAAAACA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      327255 21 -    373274 --ATATATTTCAGGAAGAAAACA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      260466 21 -    285216 --ATATATTTCAGGAAGAAAACA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1646295 20 -   2232465 TAATATATTTCAGGAGGACA---
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e colAng1.NW_012115566v1     1995883 13 -   3067355 I
e manLeu1.NW_012104165v1     2129794 13 +   2316924 I
e chlSab2.chr17             28424923 1684 -  71996105 I
e cerAty1.NW_012001495v1     1981829 5833 -   2157725 I
e macNem1.NW_012011356v1     2119158 13 -   2996164 I
e rheMac8.chr4              29468087 13 + 172585720 I

a score=1221844.000000
s hg38.chr6_GL000254v2_alt    278295 148 +   4827813 ctgacaaccgtgaaattcaaactagatagtagagaaactggaattggggagaccagttagaaagcGGTTTGGAAACAAAGAT-ACACA-TGAGTTTTAAAGCTGTGGGCTAATGTAGATGTTGATGTGATTATAAGTCTCTGTTAAAAGA
s panTro5.chr6              29253456 148 + 175400573 ctgacaactgtgaaattcaaactagatagtagagaaactggaattggggagaccagttagaaagcGGTTTGGAAACAAAGAT-ACACA-TGAGTTTTAAAACTGTGGGCTAATGTAGATGTTGATGTGATTATAAGTCTCTGTTAAAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29499528 148 + 173848474 CTGACAACTGTGAAATTCAAACTAGCTAGTAGAGAAACTGGAATTGGGGAGACCAGTTAGAAAGCGGTTTGGAAACAAAGAT-ACACA-TGAGTTTTAAAACTGTGGGCTAATGTAGATGTTGATGTGATTATAAGTCTCTGTTAAAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5299855 148 +   6154872 ctgacaaccgtgaaattcaaactagatagtagagaaactggaattggggagaccagttagaaagcGGTTTGGAAACAAAGAT-ACACA-TGAGTTTTAAAACTGTGGGCTAATGTAGATGTTGATGTGATTATAAGTCTCTGTTAAAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74303030 148 + 122973662 ctgacaaccgtgaaattcaaactagatggtagagaaactggaattggggagaccagttagaaagctgttTGGAAACAAAGAT-ACACA-TGAGTTTTAAAGCTGTGGGCTAATGTAGATGTTGATGTGATTATAAATCTCTGTTAAAACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29468100 148 + 172585720 CTGACAACCGTGAAATCCGAACTAGATAGTAGAGAAACTGGAACTGGGAAGACCAGTTAGGAAGCTGTTTGGAAACAAAGAT-ACACA-TGAGTTTTAAAGCTGTGGGCTAATGTAGATGTTGGTGTGATTACAAGTCTCTGTTAAAAGA
i rheMac8.chr4             I 13 I 1
s macFas5.chr4              29129218 148 - 170955103 CTGACAACCGTGAAATCCGAACTAGATAGTAGAGAAACTGGAACTGGGAAGACCAGTTAGGAAGCTGTTTGGAAACAAAGAT-ACACA-TGAGTTTTAAAGCTGTGGGCTAATGTAGATGTTGGTGTGATTACAAGTCTCTGTTAAAAGA
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     2119171 148 -   2996164 CTGACAACCGTGAAATCCGAACTAGATAGTAGAGAAACTGGAACTGGGAAGACCAGTTAGGAAGCTGTTTGGAAACAAAGAT-ACACA-TGAGTTTTAAAGCTGTGGGCTAATGTAGATGTTGGTGTGATTACAAGTCTCTGTTAAAAGA
i macNem1.NW_012011356v1   I 13 I 1
s manLeu1.NW_012104165v1     2129807 148 +   2316924 ctgacaaccgtgaaatttgaactaggtagtagagaaactggaactggggagaccagttaggaagctgttTGGAAACAAAGAT-AGACA-TGAGTTTTAAAGCTGTGGGCTAATGTAGATGTTGATGTGATTACAAGTCTCTGTTAAAAGA
i manLeu1.NW_012104165v1   I 13 I 320
s colAng1.NW_012115566v1     1995896 148 -   3067355 ctgacaaccgtgaaatttgaactagatagtagagaaactggaactggggagatcagttaggaagctgttTGGAAACAAAGAT-ACACA-TGAGTTTTAAAGCTATGGGCTAATGTAGATGTTGATGTGATTACAAGTCTCTGTTAAAAGA
i colAng1.NW_012115566v1   I 13 I 1
s calJac3.chr4             171509248 148 - 171630274 ctgacaacgctgaaatttgaactagatggtagagaaactagaactggggagaccagtcagaaagctgttTGAAAACAAAGAT-ACACA-TGAGTTCTAAAGCTGTGGACTAATGCAGATGTTGATGTGATTATAAGTCTCCATTAAAAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            334125 146 -    375362 CTG--AATGGTGAAATTTGAACTAGAGGGTAGGGAAACTGTAACTGGGGAGACCAGTCAGAAAGCTGTTTGAAAACAAAGAT-ACACA-TGAGTTCTAAAGCTGTGGGCTAATGTAGATGTCGATGTGATTATAAGTCTCCATTAAAAGA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      327276 146 -    373274 CTG--AACGGTGAAATTTGAACTAGATGGTAGAGAAACTGGAACTGGGGAGACCAGTCAGAAAGCTGTTTGAAAACAAAGAT-ACACA-TGAGTTCTAAAGCTGTGGGCTAATGTAGATGTTGATGTGATTATAAGTCTCCATTAAAAGA
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      260487 149 -    285216 CTGACAATGGTGAAATTTGAACAGGATGATAAAGAAACTGGAACTGGGGAGACCAGTCAGAAAGCTGTTTGAAAACAAAGATAACACG-TGAGTTCTAAGGCTGTGGGCTAATGTAGATGTCGATGTGATTATAAGTTTCCATTAAAAGA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1646315 148 -   2232465 CTTACAATTGTGAAATTTGAACTAGATGGGAAAGAAACTGGAGTCAAAGAGACCTGT-AGAAAGCCCTTTGGAAACAAAGAT-AGACATTGAATTCTAAACCTGTGGGCTAATGTAGCTGTTGGTGTGATAATAAGTCACTGTTACAGAA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e chlSab2.chr17             28424923 1684 -  71996105 I
e cerAty1.NW_012001495v1     1981829 5833 -   2157725 I

a score=72331.000000
s hg38.chr6_GL000254v2_alt    278443 12 +   4827813 GTT-AGGGTGAGG
s panTro5.chr6              29253604 13 + 175400573 GTTTAGGGTGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29499676 13 + 173848474 GTTTAGGGTGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5300003 13 +   6154872 GTTTAGGGTGAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74303178 13 + 122973662 GTTTAGGGTGAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29468249 12 + 172585720 -TTTAGGGTGGTT
i rheMac8.chr4             I 1 I 4
s macFas5.chr4              29129367 12 - 170955103 -TTTAGGGTGGTT
i macFas5.chr4             I 1 I 4
s macNem1.NW_012011356v1     2119320 12 -   2996164 -TTTAGGGTGGTT
i macNem1.NW_012011356v1   I 1 I 4
s colAng1.NW_012115566v1     1996045 12 -   3067355 -TTTAGGGTGGTT
i colAng1.NW_012115566v1   I 1 I 4
s calJac3.chr4             171509396 13 - 171630274 GTTTAGGGTGAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            334271 13 -    375362 GTTTAGGGTGAGG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      327422 13 -    373274 GTTTAGGGTGAGG
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      260636 13 -    285216 GTTTAGGATGAGG
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1646463 12 -   2232465 -TTGAGGGTGAAG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e manLeu1.NW_012104165v1     2129955 320 +   2316924 I
e chlSab2.chr17             28424923 1684 -  71996105 I
e cerAty1.NW_012001495v1     1981829 5833 -   2157725 I

a score=2202958.000000
s hg38.chr6_GL000254v2_alt    278455 238 +   4827813 TTTGAGGTGGTTTTAGATTATTATTTTTGCTAAAGAACCCAGAAATGACTAAGTTTAT------------CCCTGTCAATCACTTCTGACACTCTACTCATATCATGTTCCTAAGGAAGTTGAACAAAAGGAGCGATAGCCAAATGGGACTAACTATAATAGCTAATATTTATTGAGTACTTA----ATACTGTACTAAAGATATTGTGTGCTACATTTTACTTAATATTCtatggggcaataagcagaactat
s panTro5.chr6              29253617 241 + 175400573 TGTGAGGTGGTTTTAGATTATTATTTTTGCTAAAGAACCCAGAAATGACTAAATTTAT------------CCCTGTCAATCACTTCTGACACTCTACTCATATCATGTTCCTAAGGAAGTTGAACAAAAGGAGTGATAGCCAAATGGGACTAACTataatagctaatatttattgagcacttatta-atactgtactaaacatattgtgtcctacattttacTTAATATTCtatggggcaataagcagaactat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29499689 241 + 173848474 TGTGAGGTGGTTTTAGATTATTATTTTTGCTAAAGAACCCAGAAATGACTAAATTTAT------------CCCTGTCAATCACTTCTGACACTCTGCTCATATCATGTTCCTAAGGAAGTTGAACAAAAGGAGTGATAGCCAAATGGGACTAACTATAATAGCTAATATTTATTGAGCACTTATTA-ATACTGTACTAAACATATTGTGTCCTACATTTTACTTAATATTCtatggggcaataagcagaactat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5300016 241 +   6154872 TGTGAGGTGGTTTTAGATTATTATTTCTGCTAAAGAACCCAGAAATGACTAAATTTAT------------CCCTGTCAATCACTTCTGACACTCTACTCATATCATGTTCCTAAGGAAGTTGAACAAAAGGAGCGATAGCCAAATGTGACTAACTATAATAGCTAATATTTACTGAGCACTTATTA-ATACTGTACTAAACATATTGTGTCCTACATTTTACTTAATATTCtatggggcaataagcagaactat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74303191 239 + 122973662 TTTGAGGTGGTTTTAGATTATTATTTTTGCTAAAGAATCCAGAAATGACTAAATGTAT------------CCCTGTCAATCACTTCTGATA--CTACCCATATCATGTTCCTAAGGAAGTTGAACACAAGGAGCAATAGCCAAATTGGACTAACTataatagctaatatttattgagcacttatta-atactgtagtaaacatattgtgtgctacattttacttaatcttctatggggcaataagcagaactat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29468265 246 + 172585720 TTTGAGGTGGTTTTAGATTATTATTTTTGCTAAAGAATCCAGAAATGACTAAATTTCT-----GGATTA-CCCTGTCAATCACTTCTGACACTCTACCCATATGATATTCCTAAGGAAGTTGAACAAAAGGAGTGATAGCCAAATGGGACTAACTataatagctaatatttattgagcacttatta-atactttactaaacatattgtgtg-tatattttacttaatcttctatggggcaacaagcagaactat
i rheMac8.chr4             I 4 C 0
s macFas5.chr4              29129383 246 - 170955103 TTTGAGGTGGTTTTAGATTATTATTTTTGCTAAAGAATCCAGAAATGACTAAATTTCT-----GGATTA-CCCTGTCAATCACTTCTGACACTCTACCCATATGATATTCCTAAGGAAGTTGAACAAAAGGAGTGATAGCCAAATGGGACTAACTataatagctaatatttattgagcacttatta-atactttactaaacatattgtgtg-tatattttacttaatcttcTATTGGgcaacaagcagaactat
i macFas5.chr4             I 4 C 0
s macNem1.NW_012011356v1     2119336 246 -   2996164 TTTGAGGTGGTTTTAGATTATTATTTTTGCTAAAGAATCCAGAAATGACTAAATTTCT-----GGATTA-CCCTGTCAATCACTTCTGACACTCTACCCATATGATATTCCTAAGGAAGTTGAACAAAAGGAGTGATAGCCAAATGGTACTAACTataatagctaatatttattgagcacttatta-atactttactaaacatattgtgtg-tatattttacttaatcttctatggggcaacaagcagaactat
i macNem1.NW_012011356v1   I 4 C 0
s cerAty1.NW_012001495v1     1987662 247 -   2157725 TTTGAGGTGGTTTTAGATTATTATTTTTGCTAAAGAATCCAGAAATGACTAAATTTCT-----GGATTA-CCCTGTCAATCACTTCTGACACTCTACCCATATGATATTCCTAAGGAAGTTGAACAAAAAGAGTGATAGCCAAATGGGACTAACTATAATAGCTAATATTTATTGAGCACTTATTA-ATACTTTACTAAACATATTGTGTGCTATATTTTACTTAATCTTCtatggggcaataagcagaactat
i cerAty1.NW_012001495v1   I 5833 C 0
s manLeu1.NW_012104165v1     2130275 247 +   2316924 TTTGAGGTGGTTTTAGATTATTATTTTTGCTAAAGAATCCAGAAATGACTAAATTTCT-----GGATTA-CCCTGTCAATCACTTCTGACACTCTACCCATATGATATTCCTAAGGAAGTTGAACAAAAAGAGTGATAGCCAAATGGGACTAACTataatagctaatatttatcgagcacttatta-atactttactaaacatattgtgtgctatattttacttaatcttctatggggcaataagcagaactat
i manLeu1.NW_012104165v1   I 320 C 0
s colAng1.NW_012115566v1     1996061 246 -   3067355 TTTGAGGTGGTTTTAGATTATTATTTTTGCTAAAGAATCCAGAAATGACTAAATTTCT-----GGATTA-CCCTGTCAATCACTTCTGACACTCTACGCATATGATGTTCCTAAGGAAGTTGAACAAAAGGAGTGATAGCCAAATGGGACTAACTATAATAGCTAATATTTATTAAGCACTTATTA-ATACTTTGCTAAACATATTGTGTG-TATATTTTACTTAATCTTCCAtggggcaataagcagaactat
i colAng1.NW_012115566v1   I 4 C 0
s calJac3.chr4             171509409 239 - 171630274 TTTGAGGTGCTTTTAGATTATTATTTTTGCTAAAGAATCCAGAAATGACCAAATTTAT------------CCCAGACAATCACTTCTGACACTCTACCCATATGATGTTCCTGAGGAAGTTGAACGAAAGAAGCGATAGCCAAATGGGACTAATTATCATagctaatatttattgagcacttatta-acac--tactaaacatattgtgtgctatattttactcaatcctcCATGGGGCAACAAGCAGAACTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            334284 241 -    375362 TTTGAGGTGCTTTTAGATTATTATTTTTGCTAAAGAATCCAGAAATGACCAAATTTAT------------CCCTGACAATCACTTCTCACACTCTACCCATATGATGTTCCTGAGGAAGTTGAATGAAGGAAGTGATAGCCAAATGGGACTAATTataatagctaatatttactgagtacttatta-acactgtactaaacatattgtgtgctatattttactcaatcctcCGTTGGgcaacaagcagaactat
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      327435 241 -    373274 TTTGGGGTGCTTTTAGATTATTATTTTTGCTAAAGAATACAGAAATGACCAAATTTAT------------CCCTGACAATCACTTCTGACACTCTACCCATATGATGTTCCTAAGGAAGTTGAACGAAAGAAGTGATAGCCAAATGGGACTAATTataatagctaatatttattgagcacttatta-acactgttctaaacatattgtgtgctatattttactcagtcctcCAtggggcaacaagcagaagtat
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      260649 241 -    285216 TTTGAGGTGCTCTTAGATCATTATTTTTGCTAAAGAATCCAGAAATGACCAAATTTAT------------CCCTGACAATCAATTCTGACACTCTACCCATATGATGTTCCTAAGGAAGTTGAACGAAAGAAGCGATAGCCAAATGGGACTAATTACAATagctaatatttattgagcacttacta-acactgtactaaacatattgtgtgctatattttactcagtcctcCAtggggcaaaaagcagaactat
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1646475 241 -   2232465 TCTGAGGTATATATA-----------TTGCTAAAAGATCCAGAAA-GACTAAATCCATCCTGTCAATGACTCCTGTCAATGACTTCTGACATTCTCCCCATATAACTTTCCTAAGGAAGTTACA-AAAAGAAACGATAGCCAAATAGTACACATTataatagtgaatatttactgagcacttatcagactctatactagactttttatgcaatatattttgcttaatcctcTGTAGGGCAACAAACGGAACTAT
i otoGar3.GL873742         C 0 I 1243
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e chlSab2.chr17             28424923 1684 -  71996105 I

a score=1169176.000000
s hg38.chr6_GL000254v2_alt    278693 143 +   4827813 tcagaaatgatcctgggatctcactctagattgcccaggaaatgtgctagctacaactggagttt-cccgttcctcttggaaagaggggctgcacctacgtatagctttgcatg--------------------------------agaccagctgcttacactttctaacacgaa
s panTro5.chr6              29253858 143 + 175400573 tcagaaatgatcctgggatctcactctagattgcccaggaaatgtgctagctacaactggagttt-cccgttcctcttggaaagaggggctgcacctacgtatagctttgcatg--------------------------------agaccagctgcttacactctctaacaggaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29499930 143 + 173848474 tcagaaatgatcctgggatctcactctagattgcccaggaaatgtgctagctacaaccggagttt-cccGTtcctcttggaaagaggggctgcacctacgtatagctttgcatg--------------------------------agaccagctgcttacactctctaacaggaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5300257 143 +   6154872 tcagaaatgatcctgggatctcactctagattgcccaggaaatgtgctagctacaactggagttt-cccgttcctcttggaaagaggggctgcacctacgtatagctttgcatg--------------------------------agaccagctgcttacactctctaacaggaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74303430 140 + 122973662 tcagaaatgatcctgggatctcactctagattgcccaggaaatgagctagctagaactggagttt-cccattcctctt-gaaagaggggttgcacctacgtatagctttgcatg--------------------------------agaccagctgcttACA--TCCTAACAGGAA
i nomLeu3.chr1a            C 0 M 702
s rheMac8.chr4              29468511 143 + 172585720 tcagaaatgatcctgggatctcactctagattgcccaggaaacgagctagctagaactggggttt-cccgctcctcttggaaagagaggttgcacctaaatttagcttcgcatg--------------------------------agatcagctgcttacactccctaacaggag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29129629 143 - 170955103 tcagaaatgatcctgggatctcactctagattgcccaggaaacgagctagctagaactggggttt-cccgcttctcttggaaagagaggttgcacctaaatttagcttcgcatg--------------------------------agatcagctgcttacactcccttacaggag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2119582 143 -   2996164 tcagaaatgatcctgggatctcactctagattgcccaggaaacgagctagctagaactggggttt-cctgctcctcttggaaagagaggttgcacctaaatttagcttcgcatg--------------------------------agatcagctgcttacactccctaacaggag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1987909 143 -   2157725 tcagaaatgatcctgggatctcaccctagattgcccaggaaatgagctagctagaactggggttt-cccgctcctcttggaaagaggggttgcacctaaatttagcttggcatg--------------------------------agatcagctgcttacactccctaacaggag
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2130522 175 +   2316924 tcagaaatgatcctgggatctcaccctagattgcccaggaaatgagctagctagaactggggttt-cccgctcctcttggaaagaggggttgcacctaaatttagcttggcatgagtacattataaatttggaaaatcttccaaccagatcagctgcttacactccctaacaggag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1996307 143 -   3067355 tcagaaatgatcctgggatctcactctagattgcccaggaaatgagctagctagaactggggttt-cccgctcctcttggaaagagaggttgcacctaaatttagcttcgcatg--------------------------------agatcagctgtttacactccctaataggag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171509648 142 - 171630274 TCAGAAATGATCCTGGGATTTTACTCTAGATTGCCCAGGAAATGAGCTAGCTAGAATTGGGGTTT-CCCCTTCCTCTTAGAAAGAGGGATTGCACCTAAGTTTAGCTTCACATG--------------------------------AGACCAGCTGCTCACACTCCCTAATAGGA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            334525 143 -    375362 ccagaaatgatcctgggatctcactctagattgcccaggaaatgagcgagctagaactggggtttcccccctcctcttagaaagaggggttgcacctaagtttagcttcacatg--------------------------------agaccagttgcttacactccctaatagga-
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      327676 139 -    373274 tcagaaatgatcctgggatctcactctagattgccca-gaaatgagctagctagaattggggttc-cccccac--cttagaaagaggggttgcacctaagtttagcttcatatg--------------------------------agaccagctgcttacactccctaatagga-
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      260890 142 -    285216 tcagaaatgatcctgggatctcactctagattgcccaggaaatgagctagctagaactggggttt-ccccctcctcttagaaagagggattgcacctaagtttagcgtcacatg--------------------------------agaccagctgctcacactccctaatagga-
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1646716 1243 -   2232465 I
e chlSab2.chr17             28424923 1684 -  71996105 I

a score=2444238.000000
s hg38.chr6_GL000254v2_alt    278836 325 +   4827813 ggggctgcaactgtccataggatgcatggtctccaggtgttgggcatctggtc---ctcagatgcttcctcagctctgctagcatctaaacccagactgcccggcaatcaagtagtctgcttgttgtcttactgaaaagtgg-tgttcaagtttatccttgacaagatagaataattgggtcaggaccagagccccaacctattgcatgtgaaatggcttgttcttgcccctggttcacctctccatgggattatgagaggattgagaactctatgcctcttgtgcctgactcttgctTTCTAAGTTTCCCCAGTAAATCTTATTCCCA
s panTro5.chr6              29254001 328 + 175400573 ggggctgcaactgtccacaggatacatggtctccaggtgttgggcatctggtcttcctcagatgcttcctcagttctgctagcatctaaacccagactgcccggcaatcaagtagtctgcttgttgtcttactgaaaagtgg-tgtgcaagtttatccttgacaagatagaataattgggtcaggaccagagccccaacctattgcatgccaaatggcttgttcttgcccctggttcacctctccatgggattatgagaggattgagaactctatgcctcttgtgcctgactcttgctttctaagtttccccAGTAAATCTTATTCCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29500073 328 + 173848474 ggggctgcaactgtccacaggatacatggtctccaggtgttgggcatctggtcttcctcagatgcttcctcagctctgctagcatctaaacccagactgcccggcaatcaagtagtctgcttgttgtcttactgaaaagtgg-tgtgcaagtttatccttgacaagatagaataattgggtcaggaccagagccccaacctattgcatgccaaatggcttgttcttgcccctggttcacctctccatgggattatgagaggattgagaactctatgcctcttgtgcctgactcttgctTTCTAAGTTTCCCCAGTAAATCTTATTCCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5300400 328 +   6154872 ggggctgcaactgtccacaggatgcatggtctccaggtgttgggcatctggtcttcctcagatgcttcctcagctctgctagcatctaaacccagactgcccggcaatcaagtagtctgcttgttgtcttactgaaaagtgg-tgtgcaagtttatccttgacaagatagaataattgagtcaggaccagagccccaacctattgcatgccaaatggcttgttcttgcccctggttcacctctccatgggattatgagaggattgagaactctatgcctCTTGTGCCTGACTCTTGCTTTCTAAGTTTCCCCAGTAAATCTTATTCCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29468654 328 + 172585720 ggggctgcaactctccacaggatgcatggtctccaggtgttaggcatctggtcttcctcagatgcttcctcagctctgctggcatctaagcccagactgcctggcaatcaagtagtctgcttgttgtcttactgaaaagtgg-tgttcaagtttatccttgagcagatagaataattgggtcaggaccagagccccaacctattgcatgtcaaatggcttgttcttgcccctggttcacctctccatgagatcatgagaggattgagaactctatgcgtcttgtgcctgattcttggtttctaagtttccccagtaaatcttattcccg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29129772 328 - 170955103 ggggctgcaactctccacaggatgcatggtctccaggtgttgggcatctggtcttcctcagatgcttcctcagctctgctggcatctaagcccagactgcctggcaatcaagtagtctgcttgttgtcttactgaaaagtgg-tgttcaagtttatccttgagcagatagaataattgggtcaggaccagagccccaacctattgcatgtcaaatggcttgttcttgcccctggttcacctctccatgagatcatgagaggattgagaactctatgcgtcttgtgcctgattcttggtttctaagtttccccagtaaatcttattcccg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2119725 328 -   2996164 ggggctgcaactctccacaggatgcatggtctccaggtgttgggcatctggtcttcctcagatgcttcctcagctctgctggcatctaagcccagactgcctggcaatcaagtagtctgcttgttgtcttactgaaaagtgg-tgttcaagtttatccttgagcagatagaataattgggtcaggaccagagccccaacctattgcatgtcaaatggcttgttcttgcccctggttcacctctccatgagatcatgagaggattgagaactctatgcgtcttgtgcctgattcttggtttctaagtttccccagtaaatcttattcccg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1988052 328 -   2157725 ggggctgcaactctccacagggtgcatggtctccaggtgttgggcatctggtcttcctcagatgcttcctcagctctgctggcatctaaacccagactgcctggcaatcaagtagtctgcttgttgtcttactgaaaagtgg-tgttcaagtttatccttgagcagatagaataattgggtcaggaccagagccccaacctattgcacgtcaaatggcttgttcttgcccctggttcacctctccatgagatcatgagaggattgagaactctatgcctcttgtgcctgattcttggtttctaagtttccccagtaaatcttattccca
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2130697 328 +   2316924 ggggctgcaactctccacaggatgcatggtctccaggtgttgggcatctggtcttcctcagatgcttcctcagctctgctggcatctaagcccagactgcctggcaatcaagtagtctgcttgttgtcttactgaaaagtgg-tgttcaagtttatccttgagcagatagaataattgggtcaggaccagagccccaacctattgcacgtcaaatggcttgttcttgcccctggttcacctctccatgagatcatgagaggattgagaactctatgcctcttgtgcctgattcttggtttctaagtttccccagtaaatcttattccca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1996450 328 -   3067355 ggggctgcaactctccacaggatgcatggtctccaggtgttgggcatctggtcttcctcagatgcttcctcagctctgctggcatctaaacccagactgcctggcaatcaagtagtctgcttgttgtcttactgaaaagtgg-tgttcaagtttatccttgagcagatagaacaattgggtcaggaccagagccccaacctattgcatgtcaaatggcttgttcttgcccctggttcacctctccatgggatcatgagaggattgagaactctatgcctcttgtgcctgattcttggtttctaagtttccccagtaaatcttattcccg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171509790 319 - 171630274 GGGGCTGCAACTCTCCACAGAATGCATGGTCTCCAGGTGTTGGGCATCTGGTCTTCCTCAGATTC---------TCTGCTGGCATCTACACCCAGGCAGCCTGGCAATCAAGTAGTCTGCTTGTTACCTTACTGAAAACTGGTTGTTGAAGTTTATCCTTGAGAAGACAGAACAACTGGATCAGGACCAGAG-CCCAACCTATTGCCTGTCAAACGGCTTGGTCTTGCCCTTGGTTCACCTCTCCAAGGAATTATAAGAGGATTGAGAACTCTATGCTTCTTGTGCCTGACTCTTGGTTTCTAACTTTCCCCAGTAAATCCGATTCCca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            334668 312 -    375362 ggggctgcaactctcca-------catggtctccaggtgctgggcatctggtcttcctcagattc---------tctgctggcatctacacccaggctgcctggcagtcaagtagtctgcttgttgccttactgaaaactggttgttcaagtttgtccttgagaagacagaataattgggtcaggaccagag-cccaacctattgcctgtcaaatggcttggtcttgccctgggttcacctctccatggaattataagaggattgagaactctatgcctcttgtgcctgactcttggtttctaactttccctggtaaatcctattcccg
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      327815 319 -    373274 ggggctgcaactctccacagaatgcatggtctccaggtgctgggcatctggtcttcctcagattc---------tctgctggcatctacacccaggcggcctggcaatcaagtagtctgcttgttgccttactgaaaactggttgttcaagtttatccttgagaagacagaacaattgggtcaggaccagag-ctcaaccttttgcctgtcaaacggcttggtcttgccctgggttcaactctccgtgcaattataagaggattgagaactctatgcctcttgcgcctgactcttggtttctaactttccccagtaaatcctattcccg
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      261032 319 -    285216 ggggctgcaactctccacagaatgcatggtctccaggtgctgggcatttggtcttcctcagattc---------tctgctggcatctacacccaggcggcctggcaatcaagtagtctgcttgttgccttactgaaaactggttgttcaagtttatccttgagaagacagaacaattggGTCAGGACCAGAG-CCCAACCTATTGCCTGCTCAACGGCTTGGTCTTGCCCTTGGTTCACCTCTCCATGGAATTGTAAGAGGACTGAGAACTCTATGCCTCTTGTGCCTGACTCTTGGTTTCTAACTTTCCCCAGTAAATCCTATTCCCG
i aotNan1.NW_018494050v1   C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1646716 1243 -   2232465 I
e chlSab2.chr17             28424923 1684 -  71996105 I
e nomLeu3.chr1a             74303570 702 + 122973662 M

a score=976992.000000
s hg38.chr6_GL000254v2_alt    279161 117 +   4827813 TTCCTTCGTTCATACTATGTGATGTTGTAGAATTTATTGCAAGGCCCGTTGTACCACatccttgcagcaaatttatgactcagaaattactatttctatcttagagatgaggaatat
s panTro5.chr6              29254329 117 + 175400573 TTCCTTAGTTCATACTATGTGATGTTGTAGAATTTATTGCAAGGCCCATTGTACCACatccttgcagcaaatttatgacttagaaattactatttctatcttagagatgaggaatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29500401 117 + 173848474 TTCCTTAGTTCATACAATGTGATGTTGTAGAATTTATTGCAAGGCCCATTGTACCACatccttgcagcaaatttatgacttagaaattactatttctatcttagagatgaggaatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5300728 117 +   6154872 TTCCTTAGTTCATACTATGTGATGTTGTAGAATTTATTGCAAGGCCCATTGTACCACatccttgcagcaaatttatgacttagaaattactatttctatcttagagatgaggaatat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29468982 117 + 172585720 ttccttaactcatactatgtgatattgtagaatttattgcaaggcccattgtaccacatccttgcagcaaatttatgacttagaaattactatttctatcttagagatgaggaatac
i rheMac8.chr4             C 0 I 2
s macFas5.chr4              29130100 117 - 170955103 ttccttaactcatactatgtgatattgtagaatttattgcaaggcccattgtaccacatccttgcagcaaatttatgacttagaaattactatttctatcttagagatgaggaatac
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1     2120053 117 -   2996164 ttccttaactcatactatgtgatattgtagaatttattgcaaggcccattgtaccacatccttgcagcaaatttatgacttagaaattactatttctatcttagagatgaggaatac
i macNem1.NW_012011356v1   C 0 I 2
s cerAty1.NW_012001495v1     1988380 117 -   2157725 ttccttaactcatactatgtgatattgtagaatttatTGGAAGGCCCATTGTATCACatccttgcagcaaatttatgacttagaaattactatttctatcttagagatgaggaatac
i cerAty1.NW_012001495v1   C 0 I 2
s manLeu1.NW_012104165v1     2131025 117 +   2316924 ttccttaactcatactatgtgatattgtagaatttattgcaaggccCATTGTATCACatccttgcagcaaatttatgacttagaaattactatttctatcttagagatgaggaatac
i manLeu1.NW_012104165v1   C 0 I 2
s colAng1.NW_012115566v1     1996778 117 -   3067355 ttccttaactcatactatgtgatattgtagaatttattgcaaggcctattgtaccacatccttgcagcaaatttatgacttagaaattactatttctatcttagagatgaggaatat
i colAng1.NW_012115566v1   C 0 I 2
s calJac3.chr4             171510109 117 - 171630274 ttccttagtgcatactatgtgatgttgtagaatatattgcaaggctcattgtaccacattcttgcagtgaatttaagacttagaaattactgtttctattttagagatgagaaatat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            334980 115 -    375362 ttccttagtTCATACTATGTGATGTTGTAGAATTTATTGCATGGCTCATTGTACCACatccttgcagtgaatttaaaacttagaaattactgtttctattttagagatgagaa--at
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      328134 114 -    373274 ttccttagttcatactatgtga---tgtagaatttattgcaaggctcattgtaccacatccttgcagcgaatttaagacttagaaattactgtttctattttagagatgagaaatat
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      261351 117 -    285216 TTCCTTAGTTCATACTATGTGATGTTGTAGAATTTATTGCAAGGCTCATTGAACCACatccttgcagtgaatttaagacttagaaattactgtttctattttagagatgagaaatat
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1647959 116 -   2232465 ttcctgcaacaATACTATGTGATATTAAAGAATTTGTCCTAAGGCCcattgtgtcaaattcttgcagcaaatttgagagttagaaa-tactgtttctatttcagagatgtgagatat
i otoGar3.GL873742         I 1243 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e chlSab2.chr17             28424923 1684 -  71996105 I
e nomLeu3.chr1a             74303570 702 + 122973662 M

a score=626919.000000
s hg38.chr6_GL000254v2_alt    279278 70 +   4827813 gagaca--gaaaaagtcacatagcaggtaggtggtaggatttgaaaccaagtcatctagttcctgagcccat
s panTro5.chr6              29254446 72 + 175400573 gagacacagaaaaagtcacatagcaggtaggtggtaggatttgaaaccaagtcatctagttcctgagcccat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29500518 72 + 173848474 gagacacagaaaaagtcacatagcaggtaggtggtaggatttgaaaccaagtcatctagttcctgagcccat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5300845 72 +   6154872 gagacacagaaaaagtcacatagcaggtaggtgataggatttgaaaccaagtcatctagttcctgagcccat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29469101 70 + 172585720 gagaca--gaaaaagtcacatagctggtaggtggtaggatttgaaaccaagtcatctgattcctgagcctat
i rheMac8.chr4             I 2 C 0
s macFas5.chr4              29130219 70 - 170955103 gagaca--gaaaaagtcacatagctggtaggtggtaggatttgaaaccaagtcatctgattcctgagcctat
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1     2120172 70 -   2996164 gagaca--gaaaaagtcacatagctggtaggtggtaggatttgaaaccaagtcatctgattcctgagcctat
i macNem1.NW_012011356v1   I 2 C 0
s cerAty1.NW_012001495v1     1988499 70 -   2157725 gagaca--gaaaaagtcacatagctggtaggtggtaggatttgaaaccaagtcatctgattcctgagcctat
i cerAty1.NW_012001495v1   I 2 C 0
s chlSab2.chr17             28426607 70 -  71996105 GAGACA--GAAAGAgtcacatagctggtaggtggtaggatttgaaaccaagtcatctgattcctgagcctat
i chlSab2.chr17            I 1684 C 0
s manLeu1.NW_012104165v1     2131144 70 +   2316924 gagaca--gaaaaagtcacatagctggtaggtggtaggatttgaaaccaagtcatctgattcctgagcctat
i manLeu1.NW_012104165v1   I 2 C 0
s colAng1.NW_012115566v1     1996897 70 -   3067355 gacaca--gaaaaagtcacgtagctggtaggtggtaggatttcaaaccaagtcatctgattcctgagcctat
i colAng1.NW_012115566v1   I 2 C 0
s calJac3.chr4             171510226 70 - 171630274 gagacacagac--agtcatatagctggtaagtggtaggatttgaaacgaagtcatctgattcctgatcctat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            335095 72 -    375362 gagacacagacaaagtcatataactggtaagtggtaggatttgaaaccaagtcatctgattcctgaacctat
i saiBol1.JH378348         C 0 I 178
s cebCap1.NW_016108108v1      328248 68 -    373274 gagacacaa----agtcatatagctggtaagtggtaggatttgaaaccaagtcgtctgatacccgaacctat
i cebCap1.NW_016108108v1   C 0 I 183
s aotNan1.NW_018494050v1      261468 72 -    285216 gagacacagacaaagtcatatagctggtaagtggtaggatttgaaaccaagtcatctgattcctgaacctat
i aotNan1.NW_018494050v1   C 0 I 185
s otoGar3.GL873742           1648075 71 -   2232465 gagacccagacaaggtcatataaccagggtgtggtagta-ctgaaactaggtcatctgattcctgaccctgt
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e nomLeu3.chr1a             74303570 702 + 122973662 M

a score=45840.000000
s hg38.chr6_GL000254v2_alt    279348 4 +   4827813 gatc
s panTro5.chr6              29254518 4 + 175400573 gatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29500590 4 + 173848474 gatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5300917 4 +   6154872 gatc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29469171 4 + 172585720 gatc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29130289 4 - 170955103 gatc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2120242 4 -   2996164 gatc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1988569 4 -   2157725 gatc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28426677 4 -  71996105 gatc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2131214 4 +   2316924 gatc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1996967 4 -   3067355 gatc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171510296 4 - 171630274 gatc
i calJac3.chr4             C 0 I 182
s saiBol1.JH378348            335345 4 -    375362 GATC
i saiBol1.JH378348         I 178 C 0
s cebCap1.NW_016108108v1      328499 4 -    373274 GATC
i cebCap1.NW_016108108v1   I 183 C 0
s aotNan1.NW_018494050v1      261725 4 -    285216 GATC
i aotNan1.NW_018494050v1   I 185 C 0
s otoGar3.GL873742           1648146 4 -   2232465 gatc
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e nomLeu3.chr1a             74303570 702 + 122973662 M

a score=1660771.000000
s hg38.chr6_GL000254v2_alt    279352 171 +   4827813 tCAAAAACTTTGTTAAACTAAATGGAACTACTAATTTATAAAGAGCTAAGTGAGTGCTCAGATAATCAAATAATCACCCATGGAGAAGTTCAAATCTCTTGCAGAAGTTCAGATCTCTGTTGGAGCATGTAGCCTAGATTTAACCTCCAGTGGT--GCCTTTAACTTTGTCCT
s panTro5.chr6              29254522 171 + 175400573 tcaaaaactttgttaaactAAATGGAACTACTAATTTATAAAGAGCTAAGTGAGTGCTCAGATAATCAAAGAATCACCCATGGAGAAGTTCAAATCTCTTGCAGAACTTCAGATCTCTGTTGGAGCATGTAGCCTAGATTTAATCTCCAGTGGT--GCCTTTAACTTTGTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29500594 171 + 173848474 tcaaaaactttgttaaactAAATGGAACTACTAATTTATAAAGAGCTAAGTGAGTGCTCAGATAATCAAAGAATCACCCATGGAGAAGTTCAAATCTCTTGCAGAACTTCAGATCTCTGTTGGAGCATGTAGCCTAGATTTAACCTCCAGTGGT--GCCTTTAACTTTGTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5300921 171 +   6154872 tcaaaaactttgttaaactAAATGGAACTACTAATTTATAAAGAGCTAAGTGAGTGCTCAGATAATCAAAGAATCACCCATGGAGAAGTTCAAATCTCTTGCAGAACTTCAGATCTCTGTTGGAGCATGTAGCCTAGATTTAACCTCCAGTGGT--GCCTTTAACTTTGTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29469175 171 + 172585720 tcaaaaaccttgttaaactAAATGGAACTACTAATTTATAAAGAGCTAAGTGAGTGCTCAGATAATCGAAGAATCACCCATGGAGAAGTTCAAATCTCATGCAGAAGTTCAGATCTCAGTTGGAGCATGTAGCCTAGATTTAACCTCCAATGGT--GCCTTTAACTTTCTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29130293 171 - 170955103 tcaaaaactttgttaaactAAATGGAACTACTAATTTATAAAGAGCTAAGTGAGTGCTCAGATAATCGAAGAATCACCCATGGAGAAGTTCAAATCTCATGCAGAAGTTCAGATCTCAGTTGGAGCATGTAGCCTAGATTTAACCTCCAGTGGT--GCCTTTAACTTTCTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2120246 171 -   2996164 tcaaaaactttgttaaactAAATGGAACTACTAATTTATAAAGAGCTAAGTGAGTGCTCAGATAATCGAAGAATCACCCATGGAGAAGTTCAAATCTCATGCAGAAGTTCAGATCTCAGTTGGAGCATGTAGCCTAGATTTAACCTCCAGTGGT--GCCTTTAACTTTCTCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1988573 167 -   2157725 tcaaaaactttgttaaactAAATGGAACTACTAATTTATAAAGAGC----TGAGTGCTCAGATAATCGAAGAATCACCCATGGAGAAGTTCAAATCTCATGCAGAAGTTCAGATCTCAGTTGGAGCATGTAGCCTAGATTTAACTTCCAGTGGT--GCCTTTAACTTTCTCCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28426681 171 -  71996105 tcaaaaactttgttaaactAAATGGAACTACTAATTTATAAAGAGCTAAGTGAGTGCTCAGATAATCGAAGAATCACCCATGGAGAAGTTCAAATCTCATGCAGAAGTTCAGATCTCAGTTGGAGCATGTAGCCTAGATTTAACCTCCAGTGGT--GCCTTTAACTTTCTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2131218 171 +   2316924 tcaaaaactttgttaaactAAATGGAACTACTAATTTATAAAGAGCTAAGTGAGTGCTCAGATAATCGAAGAATCACTCATGGAGAAGTTCAAATCTCATGCAGAAGTTCAGATCTCAGTTGGAGCATGTAGCCTAGATTTAACTTCCAGTGGT--GCCTTTAACTTTCTCCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1996971 171 -   3067355 tcaaaaactttgttaaactAAATGGAACTACTAATTTATAAAGAGCTAAGTGAGTGCTCAGATAATCAAAGAATCACCCATGGAGAAGTTCAAATCTTATGCAGAAGTTCAGATCTCAGTTGGAGCATGTAGCCTAGATTTAACCTCCAGTGGT--GCCTTTAACTTTCTCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171510482 173 - 171630274 tCAAAAACTTTGCTAAACTAAATGGGACTACTAATTTATAAAGAGCTAAGTGAGTGCTGAGATAATCAAAGAATCACCCATGGAGAAGTTCAAATCTTATGCAGAATTTCAGGTCTCAGTTGGAGCATGTAGCCTAGATTTAACCTCCAGTGGTGCGCCTTTTACTTTCTCTT
i calJac3.chr4             I 182 C 0
s saiBol1.JH378348            335349 171 -    375362 TCAAAAATTTTGTTAAACTAAATGGAACTACTAATTTATAAAGAGCTAAGTGAGTGCTGAGGTAATTAAAGAATCACCCATGGAGAAGTTCAAATCTCATGCAGAATTTCAGATCTCAGTTGGAGCGTGTAGCCTAGATTTAACCTCCAGTGGT--GCCTTTTACTTTCTCTT
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      328503 169 -    373274 TCAAAAACTTTGTTAAACTAAATGGAGCTACTAATTTATAAAGAGCTAAGTGAGTGCTGA--TAATCAAAGAATCACCCATGGAGAAGTTCAAATCTCATGCAGAATTTCAGATCTCAGTTGGAGTATGTAGCCTAGATTTAACCTCCAGTGGT--ACCTTTTACTTTCTCTT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      261729 165 -    285216 TCAAAAACTTTGTTAAACTAAATGGAACTACTAATTTATAAAGAGCTAAGTGAGTGCTGTGATAATCAAAGAATCACCTATGGAAAAGTTCAAATCTCATGCAGAAGTTCAGATCTCAGTTAGAGCATGTAGCCTAGATTTAACCTCCAGTTAA--AT------CTTTCTCTT
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1648150 169 -   2232465 tCAAAAACTTTGTTAAATTAAATGGAACTGCCAATTTATAAAGAGTTAAATGAGAGATCAACTATTC--CGAAGCACCCATTCAGCTGTTCAAATCCTGTGCAGTGGGTCAGGTGTTGGCTGGAACATGTAGGCTAGATTTAGTCTTCACTGGT--ACCTTTTACTTTCTCCT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e nomLeu3.chr1a             74303570 702 + 122973662 M

a score=10359669.000000
s hg38.chr6_GL000254v2_alt    279523 1044 +   4827813 AAGTCTTAGGCTTGTGTCAACTGCTGGCCAGCTACATGGAGGAAATAAGTTGAGAAAAAGCAGGAAGCAAC-ATGGCTGGGTCTACAGAGAAGATCCAAGTTTAGCTGTCTCATGCTCTTTGGGCCCAGAGGAGAGGAAAAGCAAGACAAAGTCTTAA--------------------------------ACTTTCCACCAGATATCAAGACCTTGTTGATGTCCTAGAACATGACCAATCAGATTAATGATGGCTCTACCTGGGAAGAGTAGCTGAGAAAGGATTAAGTTGAGGCAGGCCTGGTGTGGGCAGATGTTGTTGAAT--------GTTTCCCACTACCCCTTCCAGCCCACTGGAAGAATGGGT-------------------TTTTTAAAAAAACATACACTCAA-----------GATGAGCTCTATTAGTCATTTCCTCATCTCA-------CTTATTATTCCAGTTAAACCAAGGCTG-AAGGACAGAAAGATCACAAACTTATTAATCTCTGGACAAACCTAGCTCAGGGCCAGAATCAGGAGGGTGAATCTCAGGAGGCTGTAACCCAACTGATTGCAAATAGGATTTTGGAATA---ACAGTTTCTGAGGTGTCACAAAGAACTGTCAGCCCTTGTGTCTGTTC----TCTAATAGAATTTTTACTTTCTTCTATGATCCCAAATTTCATAA----ACTCATACTATAACTAGGAAGTAGGCAGAAATGTCCTTTTGATGAACCAAATAATC--------------------------------------------------------------------AGAAACTTTTCTAATAATCCTCTTTGTG-TATTTTTCCAGCCACAGAACTGAGTCATTCATTA---CCCAAA--GCTAAACCCTGCCT-ACATGGTAACGCTTT--------TGTAAATGGGATTCTTTCTCTCTGACATCCC-TTTTTCCTGCAGTCCCTTATACCCT-CTCAATACCAGTGTGGCTCAA-GGGGCCTTCAGTTCTGTCCTAATTCAG--TCTCACATTCAAGCTGCACCTCCTTAGGCACCAGAATGCGAGAGAAGG--TTGTTCCTTCAGGGAATATTTTCTTTT-GGCAGGGCCATGTCACTGAGTCAGGCTTACTAA----TTATGTCCCAAGGTGGGCTCAGCCTCTGGCCCTTCAAGGAGCTTAGAGAGCTCTGG----AG
s panTro5.chr6              29254693 1046 + 175400573 AAGTCTTAAGCTTGTGTCAACTGCTGGCCAGCTACATGGAGGAAATAAGTTGAGAAAAATCAGGAAGCAAC-ATGGCTGGGTCTACAGAGAAGATCCAAGCTTAGCTGTCTCATGCTCTTTGGGCCCAGAGGAGGGGAAAAGCAAGACAAAGTCTTAA--------------------------------ACTTTCCACCAGATATCAAGACCTTGTTGATGTCCTAGAACATGACCAATCAGATTAATGATGGCTCTACCTGGGAAGAGTAGCTGAGAAAGGATTAAGTTGAGGCAGGCCTGGTGTGGGCAGATATTGTTGAAT--------GTTTCCCACTACCCCTTCCAGCCCACTGGAAGAATGGGT-------------------TTTTTAAAAAAACATACACTCAA-----------GATGAGCTCTATTAGTCATTTCCTCATCTCA-------CTTATTATTCCAGTTAAACCAAGGCTG-AAGGACAGAAAGGACACAAACTTATTAATCTCTGGACAAACCTAGCTCAGGGCCAGAATCAGGAGGGTGAATCTCAGGAGGCTGTAACCCAACTGATTGCAAATAGGATTTTGGAATA---ACAGTTTCTGAGGTGTCACAAAGAACTGTCAGCCCTTGTGTCTGTTC----TCTAATAGAATTTTTACTTTCTTCTATGATCCCAAATTTCATAA----ACTCATACTATAACTAGGAAGTAGGCAGAAATGTCCTTTTGATGAACCAAATAATC--------------------------------------------------------------------AGAAACTTTTCTAATAATCCTCTTTGTG-TATTTTTCCAGCCACAGAACTGAGTCATTCATTA---CCCAAAGCGCTAAACCCTGCCT-ACATGGTAACGCTTT--------TGTAAATGGGATTCTTTCTCTCTGACATCCC-TTTTTCCTGCAGTCCCTTATACCCT-CTCAATACCAGTGTGGCTCAA-GGGGCCTTCAGTTCTGTCCTAATTCAG--TCTCACATTCAGGCTGCACCTCCTTAGGCACCAGAATGCGCGAGAAAG--TTGTTCCTTCAGGGAACATTTTCTTTT-GGCAGGGCCATGTCACTGAGTCAGGCTTACTAA----TTATGTCCCAGAGTGGGCTCAGCCTCTGGCCCTTCGAGGAGCTTAGAGAGCTCTGG----AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29500765 1042 + 173848474 AAGTCTTAAGCTTGTGTCAACTGCTGGCCAGCTACATGGAGGAAATAAGTTGAGAAAAATCAGGAAGCAAC-ATGGCTGGGTCTACAGAGAAGATCCAAGCTCAGCTGTCTCATGCTCTTTGGGCCCAGAGGAGGGGAAAAGCAAGACAAAGTCTTAA--------------------------------ACTTTCCACCAGATATCAAGACCTTGTTGATGTCCTAGAACATGACCAATCAGATTAATGATGGCTCTACCTGGGAAGAGTAGCTGAGAAAGGATTAAGTTGAGGCAGGCCTGGTGTGGGCAGATGTTGTTGAAT--------GTTTCCCACTACCCCTTCCAGCCCACTGGAAGAATGGGT-------------------TTTTTAAAAAAACATACACTCAA-----------GATGAGCTCTATTAGTCATTTCCTCATCTCA-------CTTATTATTCCAGTTAAACCAAGGCTG-AAGGACAGAAAGGTCACAAACTTATTAATCTCTGGACAAACCTAGCTCAGGGCCAGAATCAGGAGGGTGAATCTCAGGAGGCTGTAACCCAACTGATTGCAAATAGGATTTTGGAATA---ACAGTTTCTGAGGTGTCACAAAGAACTGTCAGCCCT--TGTCTGTTC----TCTAATAGAATTTTTACTTTCTTCTATGATCCCAAATTTCATAA----ACTCATACTATAACTAGGAAGTAGGCAGAAATGTCCTTTTGATGAACCAAATAATC--------------------------------------------------------------------AGAAACTTTTCTAATAATCCTCTTTGTG-TATTTTTCCAGCCACAGAACTGAGTCATTCATTA---CCCAAA--GCTAAACCCTGCCT-ACATGGTAACGCTTT--------TGTAAATGGGATTCTTTCTCTCTGACATATC-TTTTTCCTGCAGTCCCTTATACCCT-CTCAATACCAGTGTGGCTCAA-GGGGCCTTCAGTTCTGTCCTAATTCAG--TCTCACATTCAGGCTGCACCTCCTTAGGCACCAGAATGCGCGAGAAAG--TTGTTCCTTCAGGGAACATTTTCTTTT-GGCAGGGCCATGTCACTGAGTCAGGCTTACTAA----TTATGTCCCAGACTGGGCTCAGCCTCTGGCCCTTCGAGGAGCTTAGAGAGCTCTGG----AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5301092 1041 +   6154872 AAGTCTTAGGCTTGTGTCAACTGCTGGCCAGCTACATGGAGGAAATAAGTTGAGAAAAAGCAGGAAGCAAC-ATGGCTGGGTCTACAGAGAAGATCCAAGCTTAGCTGTCTCATGCTCTTTGGGCCCAGAGGAGGGGAAAAGCAAGACAAAGTCTTAA--------------------------------ACTTTCCACCAGATATCAAGACCTTGTTGATGTCCTAGAACATGACCAATCAGATTAATGATGACTCTACCTGGGAAGAGTAGTTGAGAAAGGATTAAGTTGAGGCAGGCCTGGTGTGGGCAGATGTTGTTGAAT--------GTTTCCCACTACCCCTTCCAGCCCACTGGAAGAATGGGT-------------------TTTTTAAAAAACCATACACTCAA-----------GATGAGCTCTATTAGTCATTTCCTCATCTCA-------CTTACTATTCCAATTAAACCAAGGCTG-AAGGACAGAAAGGTCACAAACTTATTAATCTCTGGACAAACCTAGCTCAGGGCCAGAATCAGGAGGGTGAATCTCAGGAGGCTGTAACCCAACTGATTGCAAATAGGA-TTTGGAATA-----AGTTTCTGAGGTGTCAGAAAGAACTGTCAGCCCTTGTGTCTGTTC----TCTAATAGAATTTTTACTTTCTTCTATGATCCCAAATTTCATAA----ACTGATACTATAACTAGGAAGTAGGCAGAAATGTCCTTTTGATGACCCAAATAATC--------------------------------------------------------------------AGAAACTTTTCTAATAATCCTCTTTGTG-TATTTTTCCAGCCATAGAACTGAGTCATTCATTA---CTCAAA--GCTAAACGCTGCCT-ACATGGTAACGCTTT--------TGTAAATGGGATTCTTTCTCTCTGACATCCC-TTTTTCCTGCAGTCCCTTATACCCT-CTCAATACCAGTGTGGCTCAA-GGGGCCTTCAGTTCTGTCCTAATTCAG--TCTCACATTCAGGCTGCACCTCCTTAGGCACCAGAATGCGCGAGAAGG--TTATTCCTTCAGGGAACATTTTCTTTT-GGCAGGGCCATGTCACTGAGTCAGGCTTACTAA----TTATGTCCCAGAGTGGGCTCAGCCTCTGGCCCTTCAAGGAGCTTAGAGAGCTCTGG----AG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74304272 1021 + 122973662 AAGTC-TAGGCTTGTGTCAACTGCTGCCCAGCTACATGGAGGAAATAAGTTGAGAAAAGGCAGGAAGCAAC-ATGGCTGGGTCTACAGAGAAGATCCAAGCTTAGCTGTCTCATGCTCTTTGGGCCCAGAGGAAAGGAAAAGCAAGACAAAGTCTTAA--------------------------------ACTTTCCACCAGATATCAAGATCTTGTTGATGTCCTAGAACATGACCAATCAGATTAATGATGG------------------GCTGAGAAAGGATTAAGTTGAGGCAGGCCTGGTGTGGCCAGATGTTGTTGAAT--------GTTTCACACTACCCCTTCCAGCCCACTGGAAGAATGGGT-------------------TTTTTAAAAAAACATACACTCAA-----------AATGAGCTCTATTAGTCATTTCCTCATCTCA-------CTTATTATTCCAGTTAAACCAAAGCTG-AAGGACAGAAAGATCACAAACTTATTAATCTCTGGACAAACCTAGTTCAGGGCCAGAATCAGGAGGGTGAATCTCAGGAGGCTGTAATCCAACTGATTGCAAATAGGATTTCGGAATA---ACAGTTTCTGAGGTGTCACAAAGAACTGTCAGCCCTTGTGTCTGTTC----CCTAATAGAACTTTTAGTGTCTTTTATGATCCTAAATTTCATAA----------ACTATAACCAGGAAGTAGGCAGAAATGTCCTTTTGATGAACCAAATAATC--------------------------------------------------------------------AGAAACTTTTCTAATAATCCTCTTTGTG-TATTTTTCCAGCCACAGAACTGAGTCATTCATTA---CCCAAA--GCTAAACCCTGCCT-ATATGGTAACGCTTT--------TGTAGATGGGATTCTTTCTCTCTGACATCCC-TTTTTCCTGCAGTCCCTTATACCCT-CCCAATACCAGTGTGGCTCAA-GGGGCCTTCAGTTCTGTCCTAATTCAGTCTCTCACATTCAGGCTGCGCCTCCTTAGGCATCAGAGTGCGCGAGAAGG--TTGTTCCTTCAGGGAACATTTTCTTTT-GGCAGGGCCATCTCACTGAGTCAGGCTTTCTAA----TTATGTCCCAGAGTGGGCTCAGCCTCTGGCCCTTCAAGGAGCTTAGAGAGCTCTGG----AG
i nomLeu3.chr1a            M 702 C 0
s rheMac8.chr4              29469346 1060 + 172585720 AAGTCTTAGGCTTGTATCAACTGCTGGCCAGCTACATGGAGGAAATAAGTTGAGAAAAGGCAGGAAGCAAC-ATGGCTGGGTCTCCAGAGAAGATCGAAGCTTAGC-GTGTCATGCTCTGTGGGCCCAGAGGAGAGGAAAAGCAAGACAAAGTCTTAA--------------------------------ACTTTCCACCATATATCAAGACCTTGTTGATGTCCTAGAACATGACCAATCAGATTAATGATGGCTGTACATTGGAAGAGTAGCTGAGAAAGGATTAAGTTGAGGAAGGCCTGGTGTGGGCAGAAGATGTTGAAT--------GTTTCCCACTACCCCTTCCAGCCCACTGGAAGAAtgtttttgttttgttttgtttttgtttttAAA-----ATACACTCAA-----------GATGAGCTCCATTAGTCATTTCCTCATCTCA-------CTTGTTATTCCAGTTAAGCAAAACCTG-AAGGACAGAAAGATCACAAACTTATCAATCTCTGGACAAACCTAGTTCAGGGCCAGAATCAGGAGGGTGAATCTCAGGAGGCTGTAATCCAACTGACTGCACATAGGATTTTGGAATA---ACAGTTTCTGAGGTGTCACAAAGAACTGTCAGCACTTGTATCTGTTC----TCTAATAGAATTTTTAGTTTCTTCTATGATCCCAAATTTCATAA----ACTCATACTATAACCAGGAAGTAGGCAGAAATGTCCTTTTGATGAAACAAATAATC----------------------------------------------------------------------AAACTTTTCTAGTAATCCTCTTTGTG-TATTTTTCCAGCCACAGAACTGAGCCATTCATTA---CCCAAA--GCTAAACCCTGCCT-GCATGGTAACGCTTT--------TGTAGATGGAATTCTTTCTCTCCTACACCCCTTTTTTCCTGCAGTCCCTTATACCCT-CCCAATACCAGTGTGACTCAA-GGGGCCTTCAGTTCTGTCCTAATTCAGTCTCTCACATTCAGGCTGCGCCTCCTGCGTCTTCAGAATGCGTGAGAAGGCTCTGTTCCTTCAGGGAACATTTTCTTTT-GGTAGGGCTATCTCACCGAGTCAGGCTTACTAA----TTATGTCCCAGAGTAGGCTCAGCCTCCGGCCTTTCACGGAGCTTAGAGAGCTCTGG----AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29130464 1061 - 170955103 AAGTCTTAGGCTTGTATCAACTGCTGGCCAGCTACATGGAGGAAATAAGTTGAGAAAAGGCAGGAAGCAAC-ATGGCTGGGTCTCCAGAGAAGATCGAAGCTTAGCTGTGTCATGCTCTGTGGGCCCAGAGGAGAGGAAAAGCAAGACAAAGTCTTAA--------------------------------ACTTTCCACCAGATATCAAGACCTTGTTGATGTCCTAGAACATGACCAATCAGATTAATGATGGCTGTACATTGGAAGAGTAGCTGAGAAAGGATTAAGTTGAGGCAGGCCTGGTGTGGGCAGAAGATGTTGAAT--------GTTTCCCACTACCCCTTCCAGCCCACTGGAAGAAtgtttttgttttgttttgtttttgtttttAAA-----ATACACTCAA-----------GATGAGCTCCATTAGTCATTTCCTCATCTCA-------CTTGTTATTCCAGTTAAGCAAAACCTG-AAGGACAGAAAGATCACAAACTTATTAATCTCTGGACAAACCTAGTTCAGGGCCAGAATCAGGAGGGTGAATCTCAGGAGGCTGTAATCCAACTGACTGCACATAGGATTTTGGAATA---ACAGTTTCTGAGGTGTCACAAAGAACTGTCAGCACTTGTATCTGTTC----TCTAATAGAATTTTTAATTTCTTCTATGATCCCAAATTTCATAA----ACTCATACTATAACCAGGAAGTAGGCAGAAATGTCCTTTTGATGAAACAAATAATC----------------------------------------------------------------------AAACTTTTCTAGTAATCCTCTTTGTG-TATTTTTCCAGCCACAGAACTGAGCCATTCATTA---CCCAAA--GCTAAACCCTGCCT-GCATGGTAACGCTTT--------TGTAGATGGAATTCTTTCTCTCCTACACCCCTTTTTTCCTGCAGTCCCTTATACCCT-CCCAATACCAGTGTGACTCAA-GGGGCCTTCAGTTCTGTCCTAATTCAGTCTCTCACATTCAGGCTGCGCCTCCTGCGTCTTCAGAATGCGTGAGAAGGCTCTGTTCCTTCAGGGAACATTTTCTTTT-GGTAGGGCTATCTCACCGAGTCAGGCTTACTAA----TTATGTCCCAGAGTAGGCTCAGCCTCCGGCCTTTCACGGAGCTTAGAGAGCTCTGG----AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2120417 1059 -   2996164 AAGTCTTAGGCTTGTATCAACTGCTGGCCAGCTACATGGAGGAAATAAGTTGAGAAAAGGCAGGAAGCAAC-ATGGCTGGGTCTCCAGAGAAGATCGAAGCTTAGCTGTGTCATGCTCTGTGGGCCCAGAGGAGAGGAAAAGCAAGACAAAGTCTTAA--------------------------------ACTTTCCACCAGATATCAAGACCTTGTTGATGTCCTAGAACATGACCAATCAGATTAATGATGGCTGTACATTGGAAGAGTAGCTGAGAAAGGATTAAGTTGAGGCAGGCCTGGTGTGGGCAGAAGATGTTGAAT--------GTTTCCCACTACCCCTTCCAGCCCACTGGAAGAAtgtttttgttttgttttgtttttgtttttAAA-----ATACACTCAA-----------GATGAGCTCCATTAGTCATTTCCTCATCTCA-------CTTGTTATTCCAGTTAAGCAAAACCTG-AAGGACAGAAAGATCACAAACTTATTAATCTCTGGACAAACCTAGTTCAGGGCCAGAATCAGGAGGGTGAATCTCAGGAGGCTGTAATCCAACTGACTGCACATAGGATTTTGGAATA---ACAGTTTCTGAGGTGTCACAAAGAACTGTCAGCACTTGTATCTGTTC----TCTAATAGAATTTTTAGTTTCTTCTATGATCCCAAATTTCATAA----ACTCATACTATAACCAGGAAGTAGGCAGAAATGTCCTTTTGATGAAACAAATAATC----------------------------------------------------------------------AAACTTTTCTAGTAATC--CTTTGTG-TATTTTTCCAGCCACAGAACTGAGCCATTCATTA---CCCAAA--GCTAAACCCTGCCT-GCATGGTAACGCTTT--------TGTAGATGGAATTCTTTCTCTCCTACACCCCTTTTTTCCTGCAGTCCCTTATACCCT-CCCAATACCAGTGTGACTCAA-GGGGCCTTCAGTTCTGTCCTAATTCAGTCTCTCACATTCAGGCTGCGCCTCCTGCGTCTTCAGAATGCGTGAGAAGGCTCTGTTCCTTCAGGGAACATTTTCTTTT-GGTAGGGCTATCTCACCGAGTCAGGCTTACTAA----TTATGTCCCAGAGTAGGCTCAGCCTCCGGCCTTTCACGGAGCTTAGAGAGCTCTGG----AG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1988740 1052 -   2157725 AAGTCTTAGGCTTGTATCAACTGCTGGCCAGCTACATGGAGGAAATAAGTTGAGAAAAGGCAGGAAGCAAC-ATGGCTGGGTCTCGAGAGAAGATCTAAGCTTAGCTGTGTCGTGCTCTGTGGGCCCAGAGGAGAGGAAAAGCAAGACAAAGTCTTAA--------------------------------ACTTTCCACCAGATATCAAGACCTTGTTGATGTCCTAGAACATGACCAATCAGATTAATGATGGCTGTACATTGGAAGAGTAGCTGAGAAAGGATTAAGTTGAGGTAGGCCTGGTGTGGGCAGAAGATGTTGAAT--------GTTTCCCACTACCCCTTCCAGCCCACTGGAAGAATGTTTTTGTTTTGTTTTG-----GTTTTTAAA-----ATACACTCAA-----------GATGAGCTCCATTAGTCATTTCCTCATCTCA-------CTTGTTATTCCAGTTAAGCAAAACCTG-AAGGACAGAAAGATCACAAACTTATTAATCTCTGGACAAACCTAGTTCAGGGCCAGAATCAGGAGGGTGAATTTCAGGAGGCTGTAATCCAACTGACTGCAAATAGGATTTTGGAATA---ACAGTTTCTGAGGTGTCACAAAGAACTGTCAGCACTTGTATCTGTTCTCTTTCTAATAGAATTTTTAGTTTCTTCTATGATCCCAAATT------------TCATACTATAACCAGGAAGTAGGCAGAAATGTCCTTTTGATGAAACAAATAATC----------------------------------------------------------------------AAACTTTTCTAGTAATCCTCTTTGTG-TATTTTTCCAGCCACAGAACTGAGCCATTCATTA---CCCAAA--GCTAAACCCTGCCT-ACATGGTAACGCTTT--------TGTAGATGGAATTCTTTCTCTCCTACACCCCTTTTTTCCTGCAGTCCCTTATACTCT-CCCAATACCAGTGTGACTCAA-GGGGCCTTCAGTTCTGTCCTAATTCAGTCTCTCACATTCAGGCTGCGCCTCCTGAGTCATCAGAATGCGTGAGAAGGCTCTGTTCCTTCAGGGAATATTTTCTTTT-GGTAGGGCTATCTCACCGAGTCAGGCTTACTAA----TTATGTCCCAGAGTAGGCTCAGCCTCCGGCCTTTCACGGAGCTTAGAGAGCTCTGG----AG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28426852 1060 -  71996105 AAGTCTTAGGCTTGTATCAACTGCTGGCCAGCTACATGGAGGAAATAAGTTGAGAAAAGGCAGGAAGCAAC-ATGGCTGGGTCTCGAGAGAAGATCGAAGCTTAGCTGTGTCGTGCTCTGTGGGCCCAGAGGAGAGGAAAAGCAAGACAAAGTCTTAA--------------------------------ACTTTCCACCAGATATCAAGACCTTGTTGATGTCCTAGAACATGACCAATCAGATTAATGATGGCTGTACATTGGAAGAGTAGCTGAGAAAGGATTAAGTTGAGGCAGGCCTGGTGTGGGCAGAAGATGTTGAAT--------GTTTCCCACTACCCCTTCCAGCCCACTGGAAGAATGT-----TTTTGTTTTGTTTTTGTTTTTAAA-----ATACACTCAA-----------GATGAGCTCCATTAGTCATTTCCTCATCTCA-------CTTGTTATTCCAGTTAAGCAAAACCTG-AAGGACAGAAAGATCACAAACTTATTAATCTCTGGACAAACCTAGTTCAGGGCCAGAATCAGGAGGGTGAATCTCAGGAGGCTGTAATCCAACTGACTGCAAATAGGATTTTGGAATA---ACAGTTTCTGAGGTGTCACAAAAAACTGTCAGCACTTTTATCTGTTCTCTTTCTAATAGAATTTTTAGTTTCTTCTATGATCCCAAATTTCATAA----ACTCATACTATAACCAGGAAGTAGGCAGAAATGTCCTTTTGATGAAACAAATAATC----------------------------------------------------------------------AAACTTTTCTAGTAATCCTCTTTGTG-TATTTTTCCAGCCACAGAACTGAGCCATTCATTA---CCCAAA--GCTAAACCCTGCCT-GCATGGTAACGCTTT--------TGTAGATGGAATTCTTTCTCTCCTACACCCCTTTTTTCCTGCAGTCCCTTATACCCT-CCCAATACCAGTGTGACTCAA-GGGGCCTTCAGTTCTGTCCTAATTCAGTCTCTCACATTCAGGCTGCGCCTCCTGAGTCGTCAGAATGCGTAAGAAGGCTCTGTTCCTTCAGGGAACATTTTCTTTT-GGTAGGGCTATCTCACCGAGTCAGGCTTACTAA----TTATGTCCCAGAGTAGGCTCAGCCTCCGGCCTTTCACGGAGCTTAGAGAGCTCTGG----AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2131389 1057 +   2316924 AAGTCTTAGGCTTGTATCAACTGCCGGCCAGCTACATGGAGGAAATAAGTTGAGAAAAGGCAGGAAGCAAC-ATGGCTGGGTCTCGAGAGAAGATCTAAGCTTAGCTGTGTCGTGCTCTGTGGGCCCAGAGGAGAGGAAAAGCAAGACAAAGTCTTAA--------------------------------ACTTTCCACCAGATATCAAGACCTTGTTGATGTCCTAGAACATGACCAATCAGATTAATGATGGCTGTACATTGGAAGAGTAGCTGAGAAAGGATTAAGTTGAGGCAGGCCTGGTGTGGGCAGAAGATGTTGAAT--------GTTTCCCACTACCCCTTCCAGCCCACTGGAAGAAtgtttttgttttgttttgtttttgtttttAAA-----ATACACTCAA-----------GATGAGCTCCATTAGTCATTTCCTCATCTCA-------CTTGTTATTCCAGTTAAGCAAAACCTG-AAGGACAGAAAGATCACAAACTTATTAATCTCTGGACAAACCTAGTTCAGGGCCAGAATCAGGAGGGTGAATCTCAGGAGGCTGTAATCCAACTGACTGCAAATAGGATTTTGGAATA---ACAGTTTCTGAGGTGTCACAAAGAACTGTCAGCACTTGTATCTGTTCTCTTTCTAATAGAATTTTTAGTTTCTTCTATGATCCCAAATT------------TCATACTATAACCAGGAAGTAGGCAGAAATGTCCCTTTGATGAAACAAATAATC----------------------------------------------------------------------AAACTTTTCTAGTAATCCTCTTTGTG-TATTTTTCCAGCCACAGAACTGAGCCATTCATTA---CCCAAA--GCTAAACCCTGCCT-ACATGGTAACGCTTT--------TGTAGATGGAATTCTTTCTCTCCTACACCCCTTTTTTCCTGCAGTCCCTTATACTCT-CCCAATACCAGTGTGACTCAA-GGGGCCTTCAGTTCTGTCCTAATTCAGTCTCTCACATTCAGGCTGCGCCTCCTGAGTCATCAGAATGCGTGAGAAGGCTCTGTTCCTTCAGGGAATATTTTCTTTT-GGTAGGGCTATCTCACCGAGTCAGGCTTACTAA----TTATGTCCCAGAGTAGGCTCAGCCTCCGGCCTTTCACGGAGCTTAGAGAGCTCTGG----AG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1997142 1064 -   3067355 AAGTCTTAGGCTGGTGTCAACTGCTGGCCAGCTACATGGAGGAAATAAGTTGAGAAAAGGCAGGAAGCAAC-ATGGCTGGGTCTCCAGAGAAGATCCAAGCTTAGCTGTGTCATGCTCTGTGGGCCCAGAGGAGAGGAAAAGCAAGACAAAGTCTTAA--------------------------------ACTTTCCGCCAGATATCAAGACCTTGTTGATGTCCTAGCACATGACCAGTCAGATTAGTGATGGCTCTCCATTGGAAGAGTAGTTGAGAAGGGATTAAGTTGAGGCAGGCCTGCTGTGGGCAGAAGATGTTGAAT--------GTTTCCCACTACCCCTTCCAGCCCACTGCAAGAatatatatatat--atatatatgtattttt-aa-----ataCACTCAA-----------GATGAGCTCTATTAGTCATTTCCTCATCTCA-------CTTGTTATTCCAGTTAAGCAAAACCTG-AAGGACAGAAAGATCACAAACTTATTAATCTCTGGACAAACCTAGTTCAGGGCCAGAATCAGGAGGGTGAATCTCAGGAGGCTGTAATCCAACTGACTGCAAATAGGATTTTGGAATA---ACAGTTTCTGAGGTATCACGAAGAACTATCAGCACTTGTATCTGTTCTCTTTCTAATAGAATTTTTAGTTTCTTCTATGATCCCAAATTTCATAA----ACTCATACTATAACCAGGAAGTAGGCAGAAAGGTCCTTTTGATGAAACAAATAATC--------------------------------------------------------------------AGAAACTTTTCTAGTAATCCTCTTTGTG-TATTTTTCCAGCCACAGAACTGAGCCATTCATTA---CCCAAA--GCTAAACCCTGCCT-CCATGGTAACGCTTT--------TGTAGATGGAATTCTTTCTCTCCTATACCCCTTTTTTCCTGCAGTCCCTTATACCCT-CCCAATACCAGTGTGACTCAA-GGGGCCTTCAGTTCTGTCCTAATTCAGTCTCTCACATTCAGGCTGCGCCTCCTGAGGCGTCAGAATGCTTGAGAAGGCTCTGTTCCTTCAGGGAACGTTTTCTTTT-GGTAGGGCCATCTCACCGAGTCAGGGTTACTAA----TTATGTCCCAGAGTAGGCTCAGCCTCTGGCCTTTCACGGAGCTTAGAGAGCTCTGG----AG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171510655 1052 - 171630274 AAGTCTAAGGCTTGTGTCAACTGCTGGCCAGCTCTAGGGAGAAAGTAAGTTGAGAAAAGGCAGGAAGCAACAATGGCTGGGTCTACAGAGATGATCCAGGCTTAGCTATCTCATCCTCTGTGGGCCCAGAGGAGAGGAAAAGCAAGACAAAGTCTT-A--------------------------------ACTTTCTACCAGATATCAAGACTTTGTCAATGTCCTAGAACATGACCAATCAGATTAATGATGGCTCTACCTTGAAAGAGTAGTGGAGAAAGGATTAAGTTGAGGCAGACCTCGTGTGAGCAGAAGGAGTTGAGTGTTTGAATGTTTACCAGTACTCCTTCCAGCCCACTGTTAGAATGTTTTTTCT--------------TTTTTAAA---TCATACACTCAA-----------GACGAGCTCTATTAGTCATTTCCTCATC----------TTTATTATGCCAGTTAAGCAAAAGCTG-AAGGACAGAAAGATCACAACCTTATTAATCTCTCGACAAATCTAGTTCAGGGCCAGAATCAGGACGGTGAATCTCAGGAGGCTGTAATCCAACTGATTGCAAATAGGATTTCAGAATA---ACCGTTTCCAAGATGTCACAAAGACCTGTCAGCACTTGCATCTGTTCCCATTGCAATGCAATTTTTAGTTTCTTGTATGATCC-----TTCATAA----TCTCATACCATAACCAGAAAATAGGCAGAAGTGT-CTTTTGATGAACCAAAGAATC--------------------------------------------------------------------TGAAACTTTTCTAATAATCCTCTTGGGG-TATTTTTCCAGCCACAGAACTGAGTCATTCATGGGTACCCAAA--GCTAACCCGTGCTT-AGATAGTAATGCTTT--------TGTAGATGGGACTCTTTCTCTCCGACACCCC-TTTTTCCTGCAGCCCTTTATACTCTGCCAAATACCAGTGTGGCTCTA-GGGGCCTTCAGTTCTGTCCTAATTCAGTCCCGCACATTCAGGCTGCGCCTCCTGAGGCATCGGGGTGAGT---AAAGGTCTGTTCCTTCAGGGAACATTGTCTTTTGGGCAAGGCCGTCTCACTGGGTCAGGCTTACTAA----TCACGGCCCAGAGTGGGCGCAGCCTCC-GTCCTTCGAGGAGCTTAGAGGGCTCTGG------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            335520 1060 -    375362 ACGTCTAAGGCTTGTGTCAACTGCTGGCCAGCTACAGGGAGAAAATAAGTTGAGAAAAGGCAGGAAGCAACAATAGCTGGGTCTACAGAGAAGATCCAGGCTTAGCTGTCTCATCCTCTGTGGGCCCAGAGGAGAGGAAAAGCAAGACAAAGTCTT-A--------------------------------ACTTTCTACCAGATATCAAGACCTTGTCGATGTCCTAGAACATGACCAATCAGATTAATGATGGCTGTACCTTGAAAGAGTAGTGGAGAAAGGATTAAGTTGAGGCAGGCCTGGTGTGAGC---AGGAGTTGAGT-TTTGAATGTTTACCAGTAC-CCTTCCAGCCCACTGTTAGAATGTTTTTTCT--------------TTTTTAAA---TCATACACTCAT-----------GATGAGCTCTATTAGTCATTTCCTCATCTCACTTGTTTTTTTTTATGCCAGTTAAGCAAAAGCTG-AAGGACAGAAAGATCACAACCTTATTAATCTCTGGACAAATCTAGTTCAGGGCCAGAATCAAGAGGGTGAATCTCAGGAGGCTGTGATCCAACTGATTGCAAATAGGATTTCAGAATA---ACCGTTTCCAAGATGTCACAAAGGACTGTCAGCACTTGTATCTGTTCCCAATGCAATGCAATTTTTAGTTTCTTCTATGATTCCAAATTTCATAA----ACTCATACTATAACCAGAAAATAGGCAGAGGTGT-CTTTTGATGAACGAAATTATC--------------------------------------------------------------------TGAAACCTTTATAATAATCCTCTTGGTG-TATTTTCCCAGCCACAGAACTGAGTCATTCATTGGT-CCCAAA--GCTAACCCCTGCTT-AAATAGTAACGCTTT--------TGTGGATGGGATTCTTTCTCTCTGACACCCC-TTTTTCCTGCAGTCCTTTATACTCTGCCAAATACCAGTGTGGCTCCA-GGGGCCTTCAATTCTGTCCTAATTCAGTCTCGCACATTCAGGCTGCGCCTCCTCAGGCATCAGAGTGCGT---CAAGGTCTGTTCCTTCAGGGAACATTTTCTTTT-GGCAAGGCCATCTCACTGAGTCAGGCTTACTGA----TCATGTCCCAGAGTGGGCTCAGCCTCT-GCCCTTCAAGGAACTTAGAGGGCTCTGG------
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      328672 1062 -    373274 AAGTCTAAGGCTTGTGTCAACTGCTGGCCAGCTACAGGGAGAAAATAAGTTGAGAAAAGGCAGGAAGCAACAATGGCTGGGTCTACAGAGAAGATCCAGGCTTAGCTGTCTCATCCTCTGTGGGCCCAGAGGAGAGGAAAAGCAATACAAAGTCTT-A--------------------------------ACTTTCTACCAGATATCAAGACCTTGTCGATGTCCTAGAACATGACCAATTGGATTAATGATGGCTGTACCTTGAAAGAGTAGTGGAGAAAGGATTAAGTTGAGGCAGGCCTGGTGTGAGCAGAAGGAGTTGAGT-TTTGAATGTTTACCAGTAC-TCTTCCAGCCCACTGTTAGAATGTTTTTTCT--------------TTTTTAAA---TCATACACTCAA-----------GATGAGCTCTATTAGTCATTTCCCCATCTCACTTGT--TTTTTTATGCCTGTTAAGCAAAAGCTG-AAGGACAGAAAGATCACAACCTTATTAATCTCTGGACAAATCTAGTTCAGGGCCAGAATCAGGAGGGTGAATCTCAGGAGGCTGTGATCCAACTGATTGCAAATAGGATTTCAGAATA---ACCATTTCCAAGATGTCGCAAAGAACTGTCAGCACTTGTATCTGTTCCCATTGCAATGCAATTTTTAGTTTCTTCTATGATCCCAAATTTCGTAA----ACTCACACTTTAACCAGAAAATAGGCAGAGGTGT-CTTTTGATGAACCAAATAATC--------------------------------------------------------------------TGAAACCTTTCTAATAACCCTCTTGGTG-TATTTTTCCAGCCACAGAACTGAGTCATTCATTGGT-ACCAAA--GCTCACCCCTCCTT-A-ATAGTAACGCTTT--------TGTGGATGGGATTCTTTCTCTCTGACACCAC-TTTTTCTTGCAGTCCTTTATACTCTGCCAAATACCAGTGTGGCTCCA-GAGGCCTTCAATTCTGTCCTAATTCAGTCTTGCACATTCAGGCTGCGCTTCCTCAGGCATCAGAGTGCGT---AAAGGTCTGTTCCTTCAGGGAACATTTTATTTT-GGTAAGGCCATCTCACTGAGTCAGGCTTACTAA----TCAAGTCCCAGAGTGGGCTCAGCCTCT-GCCCTTCAAGGAGCTTAGAGGGCTCTGGAG----
i cebCap1.NW_016108108v1   C 0 I 118
s aotNan1.NW_018494050v1      261894 1060 -    285216 AAGTCTAAGGCTTGTGTCAACTGCTGGCCAGCTACAGGGAGAAAATAAGTTGAGAAAAGGCAGGAAGCAACAATGGCTGGGTCTACAGAGAAGATCCAGACTTAGCTGTCTCATCCTCTGTAGGTCCAGAGGAGAGGAAAAGCAAGACAAAGTCTT-A--------------------------------ACTTTCTACCAGATATCAAGACCTTGTCGATGTCCTAGAACATGACCAATCAGATTAATGATGGCTCTACCTTGAAAGAGTAGTGGAGAAAGGATTAAGTTGAGGCAGGCCTGGTGTGAGCAGAAGGAGTTGAGTGTTTGAATATTTACCAGTACCCCTTCCAACCCACTGTTAGAATGTTTTTTCT--------------TTTTTAAA---TCATACACTCAA-----------GATGAGCTCTATTAGTCATTTCCTCATCTCACTTGT--TTTATTATGCCAGTTAAGCAAAAGCTG-AAGGACAGAAAGATCACAACCTTATTAATCTCTCGACAAATCTAGTTCAGGGCCAGAATCAGGAGGGTGAATCTCAGGAGGCTGTGATCCAACTGATTGCAAATAGGATTTCAGAATA---ACTGTTTCCAAGATGTCACAAAGAACTGTCAGCACTTGTATCTATTCCCATTGCAATGCAATTTTTAGTTTCTTCTATGATCCCAAATTTCATAA----ACTCATACTATAACCAGAAAATAGGCAGAGGTGT-CTTTTGATGAACCAAATAATC--------------------------------------------------------------------TGAAACTTTTCTAATAATCCTCTTGGTG-TATTTTTCCAGCCACAGAACTGAGTCATTCATTGGTACCCAAA--GCTAACCCCTGCTT-AGATAATAATGCTTT--------TGTGGATGGGATTCTTTCTCTCTGACGCCCC-TTTTTCCTGCAGTCCTTTATACTCTGCCAAA----AGTGTGGCTCCA-GGGGCCTTCAGTTCTGTCCTAATTCAGTCTGACACATTTAGGCTGCGCCTCCTCAGGCATC--AGTGCGT---AAAGGTCTGTTCCTTCAGGGAACGTTTTCTTTT-GGCAAGGCCATCTCACTGAGTCAGGCTTACTAA----TCATGTCCCAGAGTGGGCTCAGCCTCT-GCCCTTCAGGGAGCTTAGAGGGCTCTGG--AG--
i aotNan1.NW_018494050v1   C 0 I 118
s otoGar3.GL873742           1648319 1114 -   2232465 AAATCTTAGGCTCCTGTCACCTCC-------------------AGTCAGTTGAGAAAAGGAGGGAACCAAC-ATGGCTGGGTCTGCAGAGTAGAATCAAGCTTAGCTTTCTTACTCTCTGTGGGCCCAGAGGAGA-GAAAAACAAGACAAAGCATGGAAGATGGGTTTGTGCCATTTAAAGTGTAGCCACACTTTCCATCAGAAATAAACAGCTTGTTGATGTTCTAGAATTTGATCAACTAGATTAATGATGTCTCTATCTTGAA----------AGAAAGGATTAAATTGAAGTAGGCCTGGTGTGGGCAGAGGG-GTCAAAT--------GTTACC-----------CCCACACATTG---GAATGGA--------------------GTTTTAAA---GCATGTACTCAATCATGCCACAGGACTAGAT-TATTAGTCACTTCCTTATCTCA-TTAC--TTTTCTGTGCTAATTAAGCAGAAGCTGAAAGGGCAGAAAGATTGTGCATGCTTTAATCTCTGGACAAATCTGGTTCAGGGCCAGAATCAGGATG----ATCTTTGGAGACTGTTATTCAACAGATTGCAACTAGGACTTCAGAATATTAACAGTCTCCAAGGTTTCACAAAGAATTTTCAGTACTTGCATCTGTTCCCATTTTGATAGGACATTTAGATTATTCTACCATCCAAATTCCCATCAATTAATTCATCCTATAAGTAGGAAGTAGACAGAAATGT-CTTTTGATAAGCCAAATAATACTAAAATTTGTATTTTACTGACAAAACAGGTGCTAGTGCTGTTTCTCAGATTCCTTTGTTATTACTTAAGAGCTTTTTCTAATAAGTCTCCTGGTGTTTTTTTTCCGACCACAGAACCGAATCACTGGT-A---TCCAAA--GCTAACTCCTGCCTGAGATGGTAACACTCTTGAATTAATGTAGATGTGGTTCTTTATCCCTGACA-----TTCTTCCTGCAGTCCCGTACACCCT-CCCAATACGAATGTGGCTCAAGGGGGCCTTCAATTCTGTTCTAATTCAATCTCTCATG-CCAGGC------TCCTCAGGCATCAG--TGTGTCAGAAGACAGTGTTCCCTTAGGGAACATTTTTTCTT-GGCAGAGCCATCTCACC--GTCAGGCTCACTAATTGCTTATGTCCCAGAGTGGGCTCCTCTTCT-GTCCTTACAGGACCTTA----GCTTTGG----AG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I

a score=647041.000000
s hg38.chr6_GL000254v2_alt    280567 101 +   4827813 AGCTAAAGGACGCAATTCCACTCAGTTCCCCTAGGGAC-TTGTTTTGTTACGACCCTGTAGCGGTTGCCGCCAGCCTCCCGTCCCCGGACAGCGCGCC---TCTT
s panTro5.chr6              29255739 101 + 175400573 AGCTAAAGGACGCAATTCCACTCAGTTCCCCTGGGGAC-TTGCTTTGTTACGACCCTGTAGCGGTTGCCGCCAGCCTCCCGTCCCCGGACAGCGCGCC---TCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29501807 101 + 173848474 AGCTAAAGGACGCAATTCCACTCAGTTCCCCTGGGGAC-TTGCTTTGTTACGACCCTGTAGCGGTTGCCGCCAGCCTCCCGTCCCCGGACAGCGCGCC---TCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5302133 101 +   6154872 AGCTAAAGGACGCAATTCCACTCAGTTCCCCTGGGGAC-TTGCTTTGTTACGACCCTGTAGCGGTTGCCGCCAGCCTCCCGTCCCCGGACAGCGCGCC---TCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74305293 104 + 122973662 AACTAAAGGACGCAATTCCACTCAGTCCCCCTGGGGAC-CTGCTTTGTTACGACCTTGTAGCGGTTGCCGCCAGCCTCCCGTTCCTGGACTCCGCGCCTCTTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29470406  99 + 172585720 AGCTAGAGGACGCAATTCCACTCAGTCCCCCTAGG--C-TTGCTTTGTTACGACCCTGTAGCATTTGCCGCCAGCCTCCCGCCCCCGGAAGGCGCGCC---TCTT
i rheMac8.chr4             C 0 I 3
s macFas5.chr4              29131525  99 - 170955103 AGCTAGAGGACGCAATTCCACTCAGTCCCCCTAGG--C-TTGCTTTGTTACGACCCTGTAGCATTTGCCGCCAGCCTCCCGCCCCCGGAAGGCGCGCC---TCTT
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1     2121476  99 -   2996164 AGCTAGAGGACGCAATTCCACTCAGTCCCCCTAGG--C-TTGCTTTGTTACGACCCTGTAGCATTTGCCGCCAGCCTCCCGCCCCCGGAAGGCGCGCC---TCTT
i macNem1.NW_012011356v1   C 0 I 3
s cerAty1.NW_012001495v1     1989792  99 -   2157725 AGCTAGAGGACGCAATTCCACTCAGTCCCCCTGGG--C-TTGCTTTGTTACGACCCTGTAGCATTTGCCGCCAGCCTCCCGCCCCCGGAAGGCGCGCC---TCTT
i cerAty1.NW_012001495v1   C 0 I 3
s chlSab2.chr17             28427912  99 -  71996105 AGCTAGAGGACGCAATTCCACTCAGTCCCCCTGGG--C-TTGCTTTGTTACGACCCTGTAGCATTTGCCGCCAGCCTCCCGCCCCCGGAAGGCGCGCC---TCTT
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012104165v1     2132446  99 +   2316924 AGCTAGAGGACGCAATTCCACTCAGTCCCCCTGGG--C-TTGCTTTGTTACGACCCTGTAGCATTTGCCGCCAGCCTCCCGCCCCCGGAAGGCGCGCC---TCTT
i manLeu1.NW_012104165v1   C 0 I 3
s colAng1.NW_012115566v1     1998206  99 -   3067355 AGCTAAAGGACACAATTCCACTCAGTCCCCCTGAG--C-TTGCTTTGTTACCACCCTGTAGCATTTGCCGCCAGCCTCCCGCCCCCGGACGGCGCGCC---TCTT
i colAng1.NW_012115566v1   C 0 I 24
s calJac3.chr4             171511707  78 - 171630274 AGCTGCAGGACGCCATTCTGCTCC--TCCCCGGGG--C-TTGCACGGTAATGACCGTGTAGCG--------CTGC-----------GGACGGCGGGCG---TCTT
i calJac3.chr4             C 0 I 3
s saiBol1.JH378348            336580  81 -    375362 AGCTACAGGACGTCATTCTGCTCCG-TCCCCGGGG--C-TTGCACAGCAACGCCCGTGTAGCG--------CAGCGT---------GGACGGCGGGCG---TCTT
i saiBol1.JH378348         C 0 I 3
s otoGar3.GL873742           1649433  96 -   2232465 GGCAAAAGGAGTCAGTTCTGCTCCATTACCCTGGT--CTTTGCTTCAT--CAACCCTGTAG-GGTTGCTGTCAGCCTGCCATCCC-GGACAGCGCGCA---Tttt
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e aotNan1.NW_018494050v1      262954 118 -    285216 I
e cebCap1.NW_016108108v1      329734 118 -    373274 I

a score=27853.000000
s hg38.chr6_GL000254v2_alt    280668 5 +   4827813 TCCTC
s panTro5.chr6              29255840 5 + 175400573 TCCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29501908 5 + 173848474 TCCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5302234 5 +   6154872 TCCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74305397 5 + 122973662 TCCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29470508 5 + 172585720 CCCTC
i rheMac8.chr4             I 3 C 0
s macFas5.chr4              29131627 5 - 170955103 CCCTC
i macFas5.chr4             I 3 C 0
s macNem1.NW_012011356v1     2121578 5 -   2996164 CCCTC
i macNem1.NW_012011356v1   I 3 C 0
s cerAty1.NW_012001495v1     1989894 5 -   2157725 CCGTC
i cerAty1.NW_012001495v1   I 3 C 0
s chlSab2.chr17             28428014 5 -  71996105 CCGTC
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012104165v1     2132548 5 +   2316924 CCGTC
i manLeu1.NW_012104165v1   I 3 C 0
s calJac3.chr4             171511788 5 - 171630274 CCCTC
i calJac3.chr4             I 3 C 0
s saiBol1.JH378348            336664 5 -    375362 TCCTC
i saiBol1.JH378348         I 3 C 0
s otoGar3.GL873742           1649529 5 -   2232465 ctttc
i otoGar3.GL873742         C 0 I 121
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e aotNan1.NW_018494050v1      262954 118 -    285216 I
e cebCap1.NW_016108108v1      329734 118 -    373274 I
e colAng1.NW_012115566v1     1998305 24 -   3067355 I

a score=103192.000000
s hg38.chr6_GL000254v2_alt    280673 16 +   4827813 CGCGCGGAATCTCGCC
s panTro5.chr6              29255845 16 + 175400573 TGCGCGGAATCTCGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29501913 16 + 173848474 TGCGCGGAATCTCGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5302239 16 +   6154872 CGCGCGGAATCTCGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74305402 16 + 122973662 CGCGCGGAATCTCGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29470513 16 + 172585720 CGCGCGGAATCTCGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29131632 16 - 170955103 CGCGCGGAATCTCGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2121583 16 -   2996164 CGCGCGGAATCTCGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1989899 16 -   2157725 CGCGCGGAATCTCGTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28428019 16 -  71996105 CGCGCGGAATCTCGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2132553 16 +   2316924 CGCGCGGAATCTCGTC
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171511793 16 - 171630274 CGCGCGGAATGTCCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            336669 16 -    375362 CTCGCGGAATGTCGCC
i saiBol1.JH378348         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1649534 121 -   2232465 I
e aotNan1.NW_018494050v1      262954 118 -    285216 I
e cebCap1.NW_016108108v1      329734 118 -    373274 I
e colAng1.NW_012115566v1     1998305 24 -   3067355 I

a score=503496.000000
s hg38.chr6_GL000254v2_alt    280689 621 +   4827813 TTGCCgagaggtgacagcgtggtgccaggcctcgctcgctctccgcgcctcctcggcctcggcgcccactctggccgcgctcgaggagcccttcagctcgccgctgcactgtgggaacccctctctgggctggcgaggccggctccctgtttgcggggaggtgtggaggaagaggcgggaactctcttgcgggccagtgcgagttccgggtgggcgcgggttccgggggccccacactcggagcggccggccggcgccacc-gctccgggcagtgaggggtttagcacccgggccagcagctacggagggggcgctgggtcccccaccgctgccggcccacccgcgccgcgctcg--------cgtgcttcagccgcctcctcgcggggcagggcttgggacctgcaacctgccatgcccgagaattcgcggtgggctcctgcgccgccggag-cctccccgacgattgccgccccctgcttcacggcttcccgtcccatccaccgcccaagggctgagaagtgc--gggcgcacggcgcgcgggactggcgggcagctccgcctgcgg-cccgggtgcaggatccaccaggtgaagccagctggactcctgagtctagtggcgacttggagaa
s panTro5.chr6              29255861 623 + 175400573 TTGCCgagaggtgacagcgtggtggcagcccttgctcgctctccgcgcctcctcggcctcggcgcccactctggccgcgctcgaggagcccttcagcccgccgctgcactgtgggaacccctctctgggctggcgaggccggctccctgttagcagggaggtgtggaggaagaggcgggaaccctcttgcgggccagcgcgagttccgggtgggcgcgggttccgggggccccacactcggagcggccggccggcgccacc-gctctgggcagtgaggggtttagcacccgggcccgcagctacggagggggcgctgggtcccccaccgctgccggcccacccgcgccgcgctcg--------cgggcttcagccgcctcctcgcggggcggggcttgggacctgcaacctgccatgcccgagaacccgccgtgggctcctgcgccgccggag-cctccccgacgattgccgccccctgcttcacggctccccgtcccatccaccgcccaagggctgacgagtgcgtgcgcgcacggcgcgcgggacgggcgggcagctccgcctgcgg-ccccggtgcaggatccaccaggtgaagccagctggactcctgagtctagtggcgacttggagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29501929 621 + 173848474 TTGCCgagaggtgacagcgtggtggcagcccttgctcgctctccgcgcctcctcggcctcggcgcccactctggccgcgctcgaggagcccttcagcccgccgctgcactgtgggaacccctctctgggctggcgaggccggctccctgttagcagggaggtgtggaggaagaggcgggaaccctcttgcgggccagcgcgagttccgggtgggcgcgggttccgggggccccacactcggagcggccggccggcgccacc-gctctgggcagtgaggggtttagcacccgggccagcagctacagagggggcgctgggtcccccaccgctgccggcccacccgcgccgcgctcg--------cgggcttcagccgcctcctcgcggggcagggcttgggacctgcaacctgccatgcccgagaacccgccgt-ggctcctgcgccgccggagccctccccgacgattgccgccccctgcttcacggctccccgtcccatccaccgcccaagggctaacgagtgc--gtgcgcacggcgcgcgggacgggcgggcagctccgcctgcgg-ccccggtgcaggatccaccaggtgaagccagctggactcctgagtctagtggcgacttggagaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5302255 621 +   6154872 TTGCCgagaggtgacagcgtggtggcagcccttgctcgctctccgcgcctcctcggcctcggcgcccactctggccgcgctcgaggagcccttcagcccgccgctgcactgtgggaacccctctctgggctggcgaggccggctccctgtttgcagggaggtgtggaggaagaggcgggaaccctcttgcgggccagcgcgagttccgggtgggcgcgggttctgggggccccacactcggagcggccggccggcgccacc-gctccgggcagtgaggggtttagcacccgggccagcagctacggagggggcgctgggtcccccaccgctgccggcccacccgcgccgcgctcg--------cgggcttcagccgcctcctcgcggggcagggcttgggacctgcaacctgccatgcccgagaacccgccgtgggctcctgcgccgccggag-cctccccgacgattgccgccccctgcttcacggctccccgtcccatccaccgcccaagggctgacgagtgt--gtgcgcacggcgcgcgggacgggcgggcagctccgcctgcgg-ccccggtgcaggatccaccaggtgaagccagctggactcctgagtctagtggcgacttggagaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74305418 563 + 122973662 TTGCtgagaggt---agcgtggtgggagccctcgctcgctctccgcgcctcctcggcctcggcgcccactctggccgcgctcgagcagcccttcagccccccgctgcgctgtgggagcccct-------------------------------------------------------------ctctcgcgggtcagcgcgagttccgggtgggcgcgggttc-gggggccccatactcggagcggccggcgggcggcaccggccccgggccgtgaggggcttagcacccgggccagcagctgcggagggggcgctgggtaccccactgctgccggcccaccggcgccacgctcaaattctcccggtcctcagccgcctccctgcggggcaaggcttgggacctgcagcccgccatgccgagaaacccgcgatggactcctgcgccgcccgag-cctccccgacgagtgccgccccctgcttcgcggcgcccagtcccatccaccgccgaagggctgaggagtgc--aggcgca--gggggcgggactggcaggcagctccgcctgcagcccccggtgcaggatccaccaggtgaagctagctgggctcctgagtctagcggcgac-tggagaa
i nomLeu3.chr1a            C 0 M 1555
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e saiBol1.JH378348            336685   0 -    375362 C
e otoGar3.GL873742           1649534 121 -   2232465 I
e aotNan1.NW_018494050v1      262954 118 -    285216 I
e cebCap1.NW_016108108v1      329734 118 -    373274 I
e calJac3.chr4             171511809   0 - 171630274 C
e colAng1.NW_012115566v1     1998305  24 -   3067355 I
e manLeu1.NW_012104165v1     2132569   0 +   2316924 C
e chlSab2.chr17             28428035   0 -  71996105 C
e cerAty1.NW_012001495v1     1989915   0 -   2157725 C
e macNem1.NW_012011356v1     2121599   0 -   2996164 C
e macFas5.chr4              29131648   0 - 170955103 C
e rheMac8.chr4              29470529   0 + 172585720 C

a score=456137.000000
s hg38.chr6_GL000254v2_alt    281310 860 +   4827813 cctttatgtctagctaagggattgtaaatataccaattagcactctgtatctagctaaactggtggggacttggagaacctttatgtctagctaagggattgtaaatacagcaatcagcactctgtgtctagctcaaggtttgtaaacaaaccaatcagcactctgtgtctagctaatctggtggggacttgg----agaacctttatgtctatctaagggattgtaaatacaccagtcagcactctgtgtctagctcaaggtttgtaaatacaccaatcagcactctgtgcctagctcaaggtttgtaaatgcaccaatcagtgctctgtgtctagctaatctagtggggacttcgagaacttttgtgtctagctcagggattgtaaacacaccaatcagcaccctgtcaaaacggaccaatcagctctctgtaaaatggaccaatcagcaggatgtgggtggggccagataagggaataaaagcaggttaccggagttggccgttgtaatttgttttgtcctgtttcacattgtggtggttttattttttactattagctgcttggatctgcattttgttttgtgaggtgtaacactgtgagggcctgtagtttcactcttgaggtcagcgaggccacgaacccacctggaaaaacaaacagttccagatatgccgccttaagagctgtaacactcattgtagaggtctgcggtttcacttctgaagctagctagtcgacgaacccaccaaaaggaataaactccaaacacgtctgactatcagaaggaacaaactccagaca---cattttttagaactaataccctgagggtctgcagcttcattctagaatcatgccaagaa
s panTro5.chr6              29256484 862 + 175400573 cctttatgtctagctaagggattgtaaatataccaattagcactctgtagctagctaatctggtggggatttggagaacctttatgtctagctaagggattgtaaatacagcaatcagcactctgtgtttagctcaaggtttgtaaacaaaccaatcagcactctgtatctagctaatctggtggggacttgg----agaacctttatgtctatgtaagggattgtaaatacaccagtcagcactctgtgtctagctcaaggtttgtaaatacaccaatcagcactctttgcctagctcaaggtttgtaaatgcaccaatcagtgc-ctgtgtctagctaatctagtggggacttcgagaacttttgtgtctagcttagggattgtaaatgcaccaatcagcaccctgtcaaaacggaccaatcggctctctgtaaaatggaccaatcagcaggatgtgggtggggccagataagggaataaaagcaggctgccggagtagaccgttgtaatttgttttggtctgtttcacgttgtggtggccttgttttttgccgttcgctgcttgggtctgcattttgttttattaggtgtaacactgtgagggtctgtagtttcactcttgaggccagccaggccacgaacccacctggagaaacaaacaggtccagatataccgctttaagagctataactgtcattgcagaggtctgcagttttacttctgaagctagccagtcaacgaacccaccagaaggaacaaacgccaaacacgtccgactatcagaaggaacaaactccggacacagcattttttagaactaacgccctgagggtctgcagcttcattctagaatcatgccaagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29502550 862 + 173848474 cctttatgtctagctaagggattgtaaatataccaattagcactctgtagctagctaatctggtggggatttggagaacctttatgtctagctaagggattgtaaatacagcaatcagcactctgtgtctagctcaaggtttgtaaacaaaccaatcagcactctgtatctagctaatctggtggggacttgg----agaacctttatgtctatgtaagggattgtaaatacaccagtcagcactctgtgtctagctcaaggtttgtaaatacaccaatcagcactctttgcctagctcaaggtttgtaaatgcaccaatcagtgc-ctgtgtctagctaatctagtggggacttcgagaacttttgtgtctagcttagggattgtaaatgcaccaatcagcaccctgtcaaaacggaccaatcggctctctgtaaaatggaccaatcagcaggatgtgggtggggccagataagggaataaaagcaggctgccggagtagaccgttgtaatttgttttgacctgtttcacgttgtggtgggtttgttttttgccgttcgctgcttgggtctttattttgttttattaggtgtaacactgtgagggtctgtagtttcactcttgaggccagccaggccacgaacccacctggagaaacaaacaggtccagatatgccgctttaagagctataagagtcattgcagaggtctgcagttttacttctgaagctagccagtcgacgaacccaccagaaggaacaaacgccaaacacgtccgactatcagaaggaacaaactccggacacagcattttttagaactaacgccctgagggcctgcagcttcattctagaatcatgccaagaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5302876 866 +   6154872 cttttatgtctagctaagggattgtaaagataccaattagcactctgtatctagctaatctggtggggatttggagaacctttatgtctagctaagggattgtaaatacagcaatcagcactctgtgtctagctcaaggtttgtaaacaaaccaatcagcactctgtatctagctaatctggtggggacttgggttcagaacctttatgtctatctaagggattgtaaatacaccagtcagcactctgtgtctagctcaaggtttgtaaatacaccaatcagcactctttgcctagctcaaggtttgtaaatgcaccaatcagtgc-ctgtgtctagctaatctagtggggacttcgagaacttttgtgtctagctcagggattgtaaatgcaccaatcagcaccctgtcaaaacggaccaatcggctctctgtaaaatggaccaatcagcaggatgtgggtggggccagataagggaataaaagcaggctgccggagttgaccgttgtaatttgttttgtcctgtttcacgttgtggtggctttgttttttgccgtttgctgtttgggtctgcattttgttttattaggtgtaacactgtgagggtctgtagtttcactcttgaggccagccaggccacgaacccacctggagaaacaaacaggtccagatatgccgccttaagagctgtaacactcattgcagagatctgcagttttacttctgaagctagccagtcgacgaacccaccagaaggaacaaactccaaacacgtccgactatcagaaggagcaaactccggacacagcattttttagaactaactccttgagggtctgcagcttcattctagaatcatgccaagaa
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e saiBol1.JH378348            336685   0 -    375362 C
e otoGar3.GL873742           1649534 121 -   2232465 I
e aotNan1.NW_018494050v1      262954 118 -    285216 I
e cebCap1.NW_016108108v1      329734 118 -    373274 I
e calJac3.chr4             171511809   0 - 171630274 C
e colAng1.NW_012115566v1     1998305  24 -   3067355 I
e manLeu1.NW_012104165v1     2132569   0 +   2316924 C
e chlSab2.chr17             28428035   0 -  71996105 C
e cerAty1.NW_012001495v1     1989915   0 -   2157725 C
e macNem1.NW_012011356v1     2121599   0 -   2996164 C
e macFas5.chr4              29131648   0 - 170955103 C
e rheMac8.chr4              29470529   0 + 172585720 C
e nomLeu3.chr1a             74305981 1555 + 122973662 M

a score=9750.000000
s hg38.chr6_GL000254v2_alt    282170 19 +   4827813 ctcacaaatttctgacaca
s panTro5.chr6              29257346 19 + 175400573 ctcacaaatttctgacaGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29503412 19 + 173848474 ctcacaaatttctgacaGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5303742 19 +   6154872 ctcacaaatttctgacaGG
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742           1649655 16 -   2232465 CTCACTGAATCTTGTC---
i otoGar3.GL873742         I 121 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e saiBol1.JH378348            336685  0 -    375362 C
e aotNan1.NW_018494050v1      262954 118 -    285216 I
e cebCap1.NW_016108108v1      329734 118 -    373274 I
e calJac3.chr4             171511809  0 - 171630274 C
e colAng1.NW_012115566v1     1998305 24 -   3067355 I
e manLeu1.NW_012104165v1     2132569  0 +   2316924 C
e chlSab2.chr17             28428035  0 -  71996105 C
e cerAty1.NW_012001495v1     1989915  0 -   2157725 C
e macNem1.NW_012011356v1     2121599  0 -   2996164 C
e macFas5.chr4              29131648  0 - 170955103 C
e rheMac8.chr4              29470529  0 + 172585720 C
e nomLeu3.chr1a             74305981 1555 + 122973662 M

a score=449814.000000
s hg38.chr6_GL000254v2_alt    282189 46 +   4827813 TTGCTTTTCCGCAGGAGGTTGCGGGAAGACGTACAAGGAAGGGTCG
s panTro5.chr6              29257365 46 + 175400573 TTGTTTTTCCGCAGGAGGTTGCGGGAAGACGTACAAGGAAGGGTCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29503431 46 + 173848474 TTGTTTTTCCGCAGGAGGTTGCGGGAAGACGTACAAGGAAGGGTCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5303761 46 +   6154872 TTGCTTTTCCACAGGAGGTTGCGGGAAGACGTACAAGGAAGGGTCG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29470529 46 + 172585720 TTGCTTTTCCGCAGGTGGTTGCGGGAAGACGTACAGGGAAGGGTCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29131648 46 - 170955103 TTGCTTTTCCGCAGGTGGTTGCGGGAAGACGTACAGGGAAGGGTCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2121599 46 -   2996164 TTGCTTTTCCGCAGGTGGTTGCGGGAAGACGTACAGGGAAGGGTCG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1989915 46 -   2157725 TTGCTTTTCCGCAGGTGGTTGCGGGAAGACGTACAGGGAAGGGTCG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28428035 46 -  71996105 TTGCTTTTCCGCAGGTGGTTGCGGGAAGACGTACAGGGAAGGGTCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2132569 46 +   2316924 TTGCTTTTCCGCAGGTGGTTGCGGGAAGACGTACAGGGAAGGGTCG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1998329 46 -   3067355 TTGCTTTTCCGCAGGTGGTTGCGGGAAGACGTACAGGGAAGGGTCG
i colAng1.NW_012115566v1   I 24 C 0
s calJac3.chr4             171511809 46 - 171630274 TTGCTTTTCCACAGGCGGTCGCGGGAAGACGCACAGGTAAGGGTCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            336685 46 -    375362 TTACTCTTCCGCGGGCTGTCGCGGGAAGACGCACAGGGAAGGATCG
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      329852 46 -    373274 TTGCTTTTCCACAGGCGGTCGCGGGAAGACGCACAGGGAAGGGTCG
i cebCap1.NW_016108108v1   I 118 I 21
s aotNan1.NW_018494050v1      263072 46 -    285216 TTGCTTTTCCACAGGCGGTCGCAGGAAGACGCACAGGGAAGGGTCG
i aotNan1.NW_018494050v1   I 118 I 2
s otoGar3.GL873742           1649671 46 -   2232465 TTACTTTTCTGCCAGCGGTTCCTGGAAGAAGTACTGGGAAAGGTCG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e nomLeu3.chr1a             74305981 1555 + 122973662 M

a score=103023.000000
s hg38.chr6_GL000254v2_alt    282235 26 +   4827813 GGATGGTGCTTGAGGTGGTCAGAGCC
s panTro5.chr6              29257411 26 + 175400573 GGATGGTGCTTGAGGGGGTCAGAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29503477 26 + 173848474 GGATGGTGCTTGAGGTGGTCAGAGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5303807 26 +   6154872 GGATGGTGCTTGAGGTGGTCAGAGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29470575 26 + 172585720 GGATGGTGCCTGAGGTGGTCACGACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29131694 26 - 170955103 GGATGGTGCCTGAGGTGGTCACGACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2121645 26 -   2996164 GGATGGTGCCTGAGGTGGTCACGACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1989961 26 -   2157725 GGATGGTGCCTGAGGTGGTCACGACC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28428081 26 -  71996105 GGATGGTGCCTGAGGTGGTCACGACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2132615 26 +   2316924 GGATGGTGCCTGAGGTGGTCACGACC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1998375 26 -   3067355 GGGTGGTGCCTGAGGTGGTCACGACC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171511855  2 - 171630274 ----------------AG--------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            336731  6 -    375362 ------------AGACAG--------
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1649717 26 -   2232465 GGATTCTACTGGATGTGGTCGGGGCC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e aotNan1.NW_018494050v1      263118  2 -    285216 I
e cebCap1.NW_016108108v1      329898 21 -    373274 I
e nomLeu3.chr1a             74305981 1555 + 122973662 M

a score=128243.000000
s hg38.chr6_GL000254v2_alt    282261 19 +   4827813 ACACCCAGGGCTGCATTCT--
s panTro5.chr6              29257437 19 + 175400573 ACACCCAAGGCTGCATTTT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29503503 19 + 173848474 ACACCCAAGGCTGCATTCT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5303833 19 +   6154872 ACACCTAGGGCTGCATTCT--
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29470601 19 + 172585720 ACACCCAGGGCTGCACCCT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29131720 19 - 170955103 ACACCCAGGGCTGCACCCT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2121671 19 -   2996164 ACACCCAGGGCTGCACCCT--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1989987 19 -   2157725 ACACCCAGGGCTGCACCCT--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28428107 19 -  71996105 ACACCCAGGGCTGCACCCT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2132641 19 +   2316924 ACACCCAGGGCTGCACCCT--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1998401 19 -   3067355 ACACCCAGGGCTGCACCCT--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171511857 19 - 171630274 ACACGCAGGGCTGAACCGT--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            336737 19 -    375362 ACACCCAGGGCTGAACCGT--
i saiBol1.JH378348         C 0 C 0
s aotNan1.NW_018494050v1      263120 19 -    285216 ACACCCAGGGCTGAACCGT--
i aotNan1.NW_018494050v1   I 2 C 0
s otoGar3.GL873742           1649743  9 -   2232465 ------------GCACCTTCG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e cebCap1.NW_016108108v1      329898 21 -    373274 I
e nomLeu3.chr1a             74305981 1555 + 122973662 M

a score=839057.000000
s hg38.chr6_GL000254v2_alt    282280  99 +   4827813 CATCAGAGACACCTCTAAGTTACTGCGAAGTCGGAGACACCAGAA--AGGAAGACT-CCAACGTATT--CCGAGAGGAGTGGAGGCAAATGGGATAGACTA-----------GCC
s panTro5.chr6              29257456  98 + 175400573 GATCAGAGACAC--CTAAGTTACTGCAAAGTCGGAGACACCAGAA--AGGAAGACTCCCAAGGTATG--CAGAGAGGAGTGGAGGCAAACGGGATAGACTG-----------GCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29503522 100 + 173848474 GATCAGAGACACCTCTAAGTTACTGCAAAGTCGGAGACACCAGAA--AGGAAGACTCCCAAGGTATG--CAGAGAGGAGTGGAGGCAAACAGGATAGACTG-----------GCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5303852 100 +   6154872 CATCAGAGACACCTCTAAGTTACTGTAAAGTCGGAGACACCAGAA--AGGAAGACTCCCAACGTATG--CCGAGAGGAGTGGAGGCAAACGGGATAGACTG-----------GCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29470620 112 + 172585720 CATCAGAGACACCTCTAAGTTACTACAAGGCCAGAGACACCAGAAAGAGGAAGACT-CCAGGATATT--CCGAGAGGAGTGGAGGCAAATGGGATCGACTGGCCTAAAACGTGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29131739 112 - 170955103 CATCAGAGACACCTCTAAGTTACTACAAGGCCAGAGACACCAGAAAGAGGAAGACT-CCAGGATATT--CCGAGAGGAGTGGAGGCAAATGGGATCGACTGGCCTAAAACGTGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2121690 112 -   2996164 CATCAGAGACACCTCTAAGTTACTACAAGGCCAGAGACACCAGAAAGAGGAAGACT-CCAGGATATT--CCGAGAGGAGTGGAGGCAAATGGGATCGACTGGCCTAAAACGTGCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1990006 112 -   2157725 CATCAGAGACACCTCTAAGTTGCTACAAGGCCAGAGACACCAGAAAGAGGAAGACT-CCAGGATATT--CCGAGAGGAGTGGAGGCAAATGGGATCGACTGGCCTAAAACGTGCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28428126 112 -  71996105 CATCAGAGACACCTCTAAGTTGCAACAAGGCCAGAGACACCAGAAAGAGGAAGACT-CCAGGATATT--CCGAGAGGAGTGGAGGCAAATGGGATCGACTGGCCTAAAACGTGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2132660 112 +   2316924 CATCAGAGACACCTCTAAGTTGCTACAAGGCCAGAGACACCAGAAAGAGGAAGACT-CCAGGATATT--CCGAGAGGAGTGGAGGCAAATGGGATCGACTGGCCTAAAACGTGCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1998420 112 -   3067355 CATCAGAGACACCTCTAAGTTACTACAAGGCCAGAGACACCAGAAAGAGGAAGACT-CCAGGATATT--CCGAGAGGAGTGGAGGCAAATGGGATCGACTGGCTTAAAACGTGCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171511876 101 - 171630274 TATCAGAGACACCTCTAAGTTCCTCTAAGGCGGGAGGCGCCAGAGACAGGAAGACT-CCGGGGCATT--CCGAGAGGAGTGGCGGCAACTGGGGTCGACTG-----------GCC
i calJac3.chr4             C 0 I 10
s saiBol1.JH378348            336756 101 -    375362 CATCAGAGACACCTCTAAGTTACTCCAAGGCCAGAGACGCCCGAAACAGGAAGACT-CCAGGGAATT--CCGAGAGGCGTGGCGGCAACTGGGATCCACTG-----------GCC
i saiBol1.JH378348         C 0 I 11
s cebCap1.NW_016108108v1      329919 101 -    373274 CATCAGAGACACCTCTAAGTTACTCCAAGGCCGGAGACGCCAGAAACAGGAAGACT-CCAGGGAATT--CCGAGAGGAGTGGCGGCAACTGGGATCGACTG-----------GCC
i cebCap1.NW_016108108v1   I 21 I 135
s aotNan1.NW_018494050v1      263139 101 -    285216 CATCAGAGACACCTCTAAGTTACTCTAAGGCCGGTGACGCCAAAAACAGGAAGACT-CCAGGGAATT--CCGAGAGGAGTGGCGGCGACTGGGATCGACTG-----------GTC
i aotNan1.NW_018494050v1   C 0 I 11
s otoGar3.GL873742           1649752 114 -   2232465 TCGCAGAGGCACCTCTAACTGATTATGAGGCCAGAGACACGAGAAAGAGGAAGACT-CTAGGGTATTACACGTGGGTAGCGGAGGCAAATGGGATCCATGGGCTTAAAATGTGGC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e nomLeu3.chr1a             74305981 1555 + 122973662 M

a score=845955.000000
s hg38.chr6_GL000254v2_alt    282379 125 +   4827813 CTCCCGCCCGGGATCCC---GCGTCTCGGGGAACGGAGACCCG--GGCACA----------------CGCCACTTGCTTGCTGGGAGGT-TCCTTACAAGTTACATAGAGGGGGA-GCTTTTCCTG--GCCAAACGTGGGTTATTCTCGT
s panTro5.chr6              29257554 125 + 175400573 CTCCCGCCCGGGATCCC---GCGTCCCGGGCAACGGAGACCCG--GGCACA----------------CGCCACTTGCTTGCTGGGAGGC-TCCTTACAAGTTACGTAGAGGGGGA-GCTTTTTCTG--GCCACACTTGGGTTATCCTTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29503622 125 + 173848474 CTCCCGCCCGGGATCCC---GCGTCCCGGGTAACGGAGACCCG--GGCACA----------------CGCCACTTGCTTGCTGGGAGGC-TCCTTACAAGTTACGTAGAGGGGGA-GCTTTTTCTG--GCCACACTTGGGTTATCCTCGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5303952 125 +   6154872 CTCCCGCCCGGGATCCC---GCGTCCCGGGGAACGGAGACCCG--GGTACA----------------CGCCACTTGCTTGCTGGGAGGC-TCCTTACAAGTTACGTAGAGGGGGA-GCTTTTTCTG--GCCAAACTTGGGTTATCCTCGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29470732 124 + 172585720 CTCCGGCCTGGAATCCC---GCGTCTGGGGGAACGGAGACCCG--GGCATA----------------CCCCACTTGCTTGCTCGGTGGC-TCCTCATAAATTACGCGGAGGGGGA-GCTCTTCCAG--ACCAAACTTGGGTTATCCTCG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29131851 124 - 170955103 CTCTGGCCTGGAATCCC---GCGTCTGGGGGAACGGAGACCCG--GGCATA----------------CCCCACTTGCTTGCTCGGTGGC-TCCTCATAAATTACGCGGAGGGGGA-GCTCTTCCAG--ACCAAACTTGGGTTATCCTCG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2121802 124 -   2996164 CTCCGGCCTGGAATCCC---GCGTCTGGGGGAACGGAGACCCG--GGCATA----------------CCCCACTTGCTTGCTCGGTGGC-TCCTCATAAATTACGCGGAGGGGGA-GCTCTTCCAG--ACCAAACTTGGGTTATCCTCG-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1990118 124 -   2157725 CTCCGGCCCGGAATCCC---GCGTCTGGGGGAACGGAGACCCG--GGCACA----------------CCCCACTTGCTTGCTCGGTGGC-TTTTCACAAATTACGTGGAGGGGGA-GCTCTTCCAG--ACTAAACTTGGGTTATCCTCG-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28428238 124 -  71996105 CTCCGGCCCGGAATCCC---GCGTCTGGGGGAACGGAGACCCG--GGCACA----------------CCCCACTTGCTTGCTCGGTGGC-TTTTCACAAATTACGTGGAGGGGGA-GCTCTTCCAG--ACTAAACTTGGGTTCTCCTCG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2132772 124 +   2316924 CTCCGGCCCGGAATCCC---GCGTCTGGGGGAACGGAGACCCG--GGCACA----------------CCCCACTTGCTTGCTCGGTGGC-TTTTCACAAATTACGTGGAGGGGGA-GCTCTTCCAG--ACTAAACTTGGGTTATCCTCG-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1998532 124 -   3067355 CTCCGGCTCGGAATCCC---GCGTCTGGGGGAACGGAGACCCG--GGCACA----------------CCCCACTTGCTTGTTCGGTGGC-TCCTCACAAATTACGTGAAGGGGGA-GCTCTTCCAG--ACCAAACTTGGGTTACCCTCG-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171511987 124 - 171630274 CTCCTGCCCGGGATCCT---GCGCCCGGGGAAGCGCAGACCGG--GGCGCA----------------CCCCCCATGCCTGCTCGACGGC-TCCTCACAAGTTACGCGGAGGTGCA-GCTTTTCTGG--ATTAAACCTGGGTCACCCTCG-
i calJac3.chr4             I 10 C 0
s saiBol1.JH378348            336868 124 -    375362 CTCCTGCCCGGGATCCT---GAGGCCGGGGAAACGCAGACCGG--GACGCA----------------CCCCCCTTGCCTGCCCCACAGC-TCCTCACAAGTTACGCGGAGGTGGA-GCTTTTCCGG--ATTAAACCTGGGTCACCCTCG-
i saiBol1.JH378348         I 11 C 0
s aotNan1.NW_018494050v1      263251 124 -    285216 CTCCTGCCCGGGATCCT---GCGGCCGGGGAAACGCAGACCGG--GGCGCA----------------CCCCCCTTGCCTGCTCGACGGC-TCCTCACAAGTTACGCGGAGGTGGA-GCTTTTCCGG--ATTAAACCTGGGTCACCCTCG-
i aotNan1.NW_018494050v1   I 11 C 0
s otoGar3.GL873742           1649866 149 -   2232465 CACGTGCCCGGAATCCCCAGAGGCACAGGGGCACTGAGACTCGCAGACGTAAGTTCAGGGCGTCCATCCCTACTTCATCGCTTGGTGGCACCTTCGTAAGTTAGGTGTAGTGGGATGCCCTTCCGGAAATTAAACTTGAGTCAGCCTCG-
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e cebCap1.NW_016108108v1      330020 135 -    373274 I
e nomLeu3.chr1a             74305981 1555 + 122973662 M

a score=282717.000000
s hg38.chr6_GL000254v2_alt    282504 25 +   4827813 TCTCCCTTCCCCACACTGTCGCAGA
s panTro5.chr6              29257679 25 + 175400573 TCTCCCTTCCCCACACTGTCGCAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29503747 25 + 173848474 TCTCCCTTCCCCACACTGTCGCAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5304077 25 +   6154872 TCTCCCTTCCCCACACTGTCGCAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74307560 25 + 122973662 TCTCCCTTGCCCACGCTGTCGCAGA
i nomLeu3.chr1a            M 1555 C 0
s rheMac8.chr4              29470856 25 + 172585720 TCTCCCTTTCCCACACTGTCGCAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29131975 25 - 170955103 TCTCCCTTTCCCACACTGTCGCAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2121926 25 -   2996164 TCTCCCTTTCCCACACTGTCGCAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1990242 25 -   2157725 TCTCCCTTTCCCACAACGTCGCAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28428362 25 -  71996105 TCTCCCTTTCCCACACTGTCGCCGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2132896 25 +   2316924 TCTCCCTTTCCCACAATGTCGCAGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1998656 25 -   3067355 TCTCCCTTTCCCACACTGTCGCAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171512111 25 - 171630274 TCTCCCTTCCCCACACGGTCGCAGA
i calJac3.chr4             C 0 I 2832
s saiBol1.JH378348            336992 25 -    375362 TCTCCCTTCCCCACACGGTCGCAGA
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      330155 25 -    373274 TCTCCCTTCCCCACACGGTCGCAGA
i cebCap1.NW_016108108v1   I 135 C 0
s aotNan1.NW_018494050v1      263375 25 -    285216 TCTCCCTTCCCCACACGGTCGCAGA
i aotNan1.NW_018494050v1   C 0 C 0
s otoGar3.GL873742           1650015 25 -   2232465 TCTCTCTTTCCCACACTGTACCAGA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I

a score=127908.000000
s hg38.chr6_GL000254v2_alt    282529 18 +   4827813 GGAGGAA----------GACGTCTTGGT
s panTro5.chr6              29257704 18 + 175400573 GGAGGAA----------GACGTGTTGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29503772 18 + 173848474 GGAGGAA----------GACGTGTTGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5304102 18 +   6154872 GGAGGAA----------GACGTGTTGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74307585 18 + 122973662 GGAGGAA----------GTCGTCTTGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29470881 18 + 172585720 GAAGGGA----------GTTGTCTTGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29132000 18 - 170955103 GAAGGGA----------GTTGTCTTGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2121951 18 -   2996164 GAAGGGA----------GTTGTCTTGGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1990267 18 -   2157725 GAAGGGA----------GTTGTCTTGGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28428387 18 -  71996105 GAAGGGA----------GTTGTCTTGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2132921 18 +   2316924 GAAGGGA----------GTTGTCTTGGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1998681 18 -   3067355 GAAGGGA----------GTTGTCTTGGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171514968 18 - 171630274 GAGGGAG----------GTCGTCTCGGT
i calJac3.chr4             I 2832 C 0
s saiBol1.JH378348            337017 15 -    375362 CAGGGAA----------GTCGTCTC---
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      330180 18 -    373274 CTGGGAA----------GTCATCTTGGT
i cebCap1.NW_016108108v1   C 0 C 0
s aotNan1.NW_018494050v1      263400 18 -    285216 CAGGGAA----------GTCGTCTTGGT
i aotNan1.NW_018494050v1   C 0 N 0
s otoGar3.GL873742           1650040 28 -   2232465 GAAAGAAGTATTGAAAGGTTTTCTTGGT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I

a score=193653.000000
s hg38.chr6_GL000254v2_alt    282547 31 +   4827813 CGCCGTT-AAGAGCTAAAACGAACGCCAAGGC
s panTro5.chr6              29257722 31 + 175400573 CGCTTTT-AAGAGCTAAAACGAATGCCGAGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29503790 31 + 173848474 CGCTTTT-AAGAGCTAAAACGAATGCCGAGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5304120 31 +   6154872 CGCTGTT-AAGAGCTAAAACGAATGCCGAGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74307603 31 + 122973662 CGCTGTT-AAGAGCTAAAACGAACGCTGAGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29470899 31 + 172585720 CACTGTT-AAGAACTGAAACGAACGCCGAGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29132018 31 - 170955103 CACTGTT-AAGAACTGAAACGAACGCCGAGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2121969 31 -   2996164 CACTGTT-AAGAACTGAAACGAACGCCGAGGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1990285 31 -   2157725 CACTGTT-AAGAGCTGAAACGAACGCCGAGGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28428405 31 -  71996105 CACTGTT-AAGAGCTGAAACGAACGCCGAGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2132939 31 +   2316924 CACTGGT-AAGAGCTGAAACGAACGCCGAGGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1998699 31 -   3067355 CACTGTT-AAGAGCTGAAAGGAACTCCGAGGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171514986 31 - 171630274 CCCTGTG-AAGAGCTGACGCGAACGCCGAGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            337032  3 -    375362 -----------------------------GGC
i saiBol1.JH378348         C 0 C 0
s cebCap1.NW_016108108v1      330198 31 -    373274 CCCTGTG-AAGAGCTGAGGCGAACGCCCAGGC
i cebCap1.NW_016108108v1   C 0 N 0
s otoGar3.GL873742           1650068 26 -   2232465 CTCTATTAAAGAAGGAAAACGAA----AAG--
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I

a score=3888621.000000
s hg38.chr6_GL000254v2_alt    282578 567 +   4827813 TC-TAAGTGGCCCTGGGGTCCAGCGCTCGCCGGAGGCACC-AGCGTGtgcaggcccggagcgccgtcttctgggcgaggagtgtcattagtaacactt-------------tatgttgcggataggtgaaagaaaaac----tgacgcttcggagatgggggtgcccaaagaggaagagagaacagcgattagggcctt--aaacctcacacccgaacaaattcggccggagtt--actgagcggcaggctctc-tgatggagatgggtgctt-tcagact-taagacgtgaaaacaaagatcagccactcatgaacgaactcaaggctcactgagatgcaactgccatgaagaagtgggtgca-----gggtgagaggtctgtctacctccttagaaggaccactgtggcttgtgcagagatccgaagtttgttctcattacaatggggac--ggtgagtgct-agtaatgt---ggaccatttttcaatagcgccaccttgtggcagtga-caaaatggccgtagtggacttgggctcaggtgctttcttga--gtgtgcaaactggtaagaactaattttttgaatc--agatttggggattattc
s panTro5.chr6              29257753 565 + 175400573 TC-TAAGTGGCTCTGGGGTCCAG-GCTCGCCGGAGGCACC-AGCGTGTGCAGACCCGGAGCGCCGTCTTCTGGGCGAGGAGTGTCATTAGTAACACTT---------------TGTTGCAGATAGACGAAAGAAAAAT----TGACGCTTCGGAGATGGGGATGCCCGAGGAGGAAGAGAGAAGAGCGATTAGGGCCTT--AAACCTCACACCCGAACAGATTCGGCCGGAGTT--ACTGAGCGGCAGGCTCTCTTGATGGAGATGGGTGCTT-TCAGACT-TAAGACGTGAAAACAAAGATCAGCCACTCATGAACGAACTCAAGGCTCACTGAGATGCAACTGCTGTGAAGAAGTGGGTGCA-----GGGTGAGAGGTCTGTCTGcctccttagaaggaccactgtggcttgtgcagagatccgaagtttgttctcattacaatggggac--ggtgagtgct-agtaatgt---ggaccatttttcaatagcgccaccttgtggcagtga-caaaatggccgtagtggacttgggctcaggtgctttcttga--gtgtgcaaactgttaagaactcattttttgaatc--agatttggggattattc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29503821 565 + 173848474 TC-TAAGTGGCTCTGGGGTCCAG-GTTCGCAGGAGGCACC-AGCGTGTGCAGACCCGGAGCGCCGTCTTCTGGGCGAGGAGTGTCATTAGTAACACTT---------------TGTTGCAGATAGACGAAAGAAAAAT----TGACGCTTCGGAGATGGGGATGCCCGAGGAGGAAGAGAGAAGAGCGATTAGGGCCTT--AAACCTCACACCCGAACAGATTCGGCCGGAGTT--ACTGAGCGGCAGGCTCTCTTGATGGAGATGGGTGCTT-TCAGACT-TAAGACGTGAAAACAAAGATCAGCCACTCATGAACGAACTCAAGGCTTACTGAAATGCAACTGCTGTGAAGAAGTGGGTGCA-----GGGTGAGAGGTCTGTCTGcctccttagaaggaccactgtggcttgtgcagagatccgaagtttgttctcattacaatggggac--ggtgagtgct-agtaatgt---ggaccatttttcaatagcgccaccttgtggcagtga-caaaatggccgtagtggacttgggctcaggtgctttcttga--gtgtgcaaactgTTAAGAACTCATTTTTTGAATC--AGATTTGGGGATTATTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5304151 564 +   6154872 TCTTAAGTGGCCCTGGGGTCCAG-GCTCGCCGGAGGCACC-AGCGTGTGCAGACCCGGAGCGCCGTCTTCTGGGCGAGGAGTGTCATTAGTAACACTT---------------TGTTGCAGATAGACGAAAGAAAAAC----CGACGCTTCGGAGATGGGGATGCCCGAGGAGGAAGAGAGAAGAGCGATTAGGGCCTT--AAACCTCACACCCGAACAGATTCGGCCGGAGTTAAACTGAGCGGCAGGCTCTC-TGATGGAGATGGGTGCTT-TCAGACT-TAAGATGTGAAAACAAAGATCAGCCACTCATGAACGAACTCAAGGCTCACTGAGATGCAACTGCTGTGAAGAAGTGGGTGCA-----GGGTGAGAGGTCTGTCTGcctccttagaaggaccactgtggcttgtgcagagatccgaagtttgttctcattacaatggggac--ggtgagtgct-agtaatgt---ggaccatttttcaatagcgccaccttgtggcagtga-caacatggccgtagtggacttgggctcaggtgctttcttga--gtgtgcaaactgtt---aactcattttttgaatc--agatttggggattattc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74307634 558 + 122973662 TC-TAAGTGGTCCTGGAGTCCAG-GCTCGCCGGAGGCACCGAGCGTGTGCAGGCCCGGAGCGCCGTCTTCTGGGCAAGGAGTGTC---AGTTACATTTT----------TTTGTGTTGCGGATCCATGAAAGAAAAAC----TGACGCTTCGAAGATGGAGATGCCCGAGGAGTA--AGAGAACAGCGATTAAGGCCTT--AAACCT--CACCCGAACAAATTAGGCTGGGGTT--ACTGAGCGGCAGGCCCTC-TGATGGAGATGGGTGCTT-TCAGACT-T---ACGTGAAAACAAAGATCAGCCACTCCCGAACGAACTCAAGGCTCACTGAAATGCAACTGCCATGGAGAAGTGGGTGCA-----GGGTGAGAGGTATGTCTAcctccttagaaggaccactgtggcctgtgcggagatccgaagtttgttttcattacaatggagac--ggtgagtgctaaataatgt---ggaccatttttcagtagcgccaccttgtggcagtga-caaaatggccttagtggacttaggctcaggtgttttcttga--gtgtgCTGACTGGT---AACTCATTTTTTGAATC--AGATTTGGGGATGATTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29470930 580 + 172585720 TC-TAAGCGGCCCTGGAGTCCAG-GCTCGCCGGAGGCACCGAGCGTGtgcgggccgggagcgccgtcttctggggaaggggtgtcattagttacactttttt------gtttatgttgaggatcgatgaaagaaaaactgtgtgatgcttcagagatgcggatccccaaggaggaagagagaacagcgatcagggcctt--aaacctcatacccgaacaaattcggccggagtt--actgagcggcatgctctc-tgatggagatgggtgctt-tcagactgtaagacgtgaaaacaaagagcagccactca-gaaagaactcaagacttactgagatgcaactgccgtgaaaaagcgggtgca-----tggtcgggggtgtgtcttcctacttagaaggactactatggcctgcgcggagatccgaagtttgttctcattataatgcggac--ggtcaatgct-aatactgt---ggcccatttttcaatagcgccaccttgtggcagtga-caaaatggccgtagtggacttgggctcaggtgctttcttga--gtgtgcaagctgataagaactcaatttttgaatctgagagttagagattattc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29132049 580 - 170955103 TC-TAAGCGGCCCTGGAGTCCAG-GCTCGCCGGAGGCACCGAGCGTGtgcgggccgggagcgccgtcttctggggaaggggtgtcattagttacactttttt------atttatgttgaggatcgatgaaagaaaaactgtgtgatgcttcagagatgcggatccccaaggaggaagagagaacagcgatcagggcctt--aaacctcatacccgaacaaattcggccggagtt--actgagcggcatgctctc-tgatggagatgggtgctt-tcagactgtaagacgtgaaaacaaagagcagccactca-gaaagaactcaagacttactgagatgcaactgccgtgaaaaagcgggtgca-----tggtcgggggtgtgtcttcctacttagaaggactactatggcctgcgcggagatccgaagtttgttctcattataatgcggac--ggtcaatgct-aatactgt---ggcccatttttcaatagcgccaccttgtggcagtga-caaaatggccgtagtggacttgggctcaggtgctttcttga--gtgtgcaagctgataagaactcaatttttgaatctgagatttagagattattc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2122000 580 -   2996164 TC-TAAGCGGCCCTGGAGTCCAG-GCTCGCCGGAGGCACCGAGCGTGTGCgggccaggagcgccgtcttctggggaaggggtgtcattagttacactttttt------gtttatgttgaggatcgatgaaagaaaaactgtgtgatgcttcagagatgcggatccccaaggaggaagagagaacagcgatcagggcctt--aaacctcatacccgaacaaattcggccggagtt--actgagcggcatgctctc-tgatggagatgggtgctt-tcagactgtaagacgtgaaaacaaagagcagccactca-gaaagaactcaagacttactgagatgcaactgccgtgaaaaagcgggtgca-----tggtcgggggtgtgtcttcctacttagaaggactactatggcctgcgcggagatccgaagtttgttctcattataatgcggac--ggtcaatgct-aatactgt---ggcccatttttcaatagcgccaccttgtggcagtga-caaaatggccgtagtggacttgggctcaggtgctttcttga--gtgtgcaagctgataagaactcaatttttgaatctgagatttagagattattc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1990316 579 -   2157725 TC-TAAGTGGCCCTGGAGTACAG-GCTCGCCGAAGGCACCGAGCGTGtgcgggccgggagcgccgtcttctggggaaggggtgtcattagttacactttttt-------ttactgttgcggatcgatgaaagaaaaactgtgtgacgcttcagagatggggatccccaaggaggaagagagaacagcgatcagggcctt--aaacctcacacctgaacaaatttggccggagtt--actgagcggcaggctctc-tgatggagatggttgctt-tcagactgtaagacgtgaaaacaaagagcagcccctca-gaacgaactcaagacttactgagatgcaactgccgtgaaaaagcgggtgca-----cagtggggggtctgtctgcctacttagaaggactactatggcctgtgcagagatccgaagtttgctctcattataatgcggac--tgtcaatgct-gatactgt---ggcccatttttcaatggcgccaccttgtggcagtga-caaaatggccgtagtgcacttgggctcaggtgctttcttga--gtgtgcaagctgATAATAACTCAATTTTTGAATCTGAGATTTAGAGATTATTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28428436 577 -  71996105 TC-TAAGTGGCCCTGGAGTACAG-GCTCGCCGGAGGCACCCAGCGTGtgcgggccgggagcgccgtcttctggggaaggggtgtcattagttacactttttt-------ttaatgttgcggatcgatgaaagaaaagctgtgtgacgcttcagagatggggatccccaaggaggaag-------agcgatcagggcctt--aaacctcacacccgaacaaattcggccggagtt--actgagcggtaggctctc-tgatggagatgggtgctt-tcggactgtaagacgtgagaacaaagagcagccactca-gaacgaactcaagacttactgagatgcaactgccgtgaaaaagcgggtgcagggtggggtggggggtctgtctacctacttagaaggacttctatggcttgtgcagagatccgaagtttgttctcatcataatgcggac--ggtcaatgct-aatactgt---ggcccatttttcaatagcgccaccttgtggcagtga-caaaatggccgtagtggacttgggctcagctgctttcttga--gtgtgcaagctgATAAGAACTCAATTTTTGAATCTGAGATTTAGAGATTATTC
i chlSab2.chr17            C 0 I 1945
s manLeu1.NW_012104165v1     2132970 579 +   2316924 TC-TAAGTGGCCCTGGAGTACAG-GCTCGCCGAAGGCACCGAGCGTGtgcgggccgggagcgccgtcttctggggaaggggtgtcattagttacactttttt-------ttaatgttgcggatcgatgaaagaaaaactgtgtgacgcttcagagatggggatccccaaggaggaagagagaacagcgatcagggcctt--aaacctcacacctgaacaaatttggccggagtt--actgagcggcaggctctc-tgatggagatggttgctt-tcagactgtaagacgtgaaaacaaagagcagcccctca-gaacgaactcaagacttactgagatgcaactgccatgaaaaagcgggtgca-----cagtggggggtctgtctgcctacttagaaggactactatggcctgtgcagagatccgaagtttgctctcattataatgcggac--tgtcaatgct-aatactgt---ggcccatttttcaatagcgccaccttgtggcagtga-caaaatggccgtagtgcacttgggctcaggtgctttcttga--gtgtgcaagctgATAATAACTCAATTTTTGAATCTGAGATTTAGAGATTATTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1998730 579 -   3067355 TC-TAAGTGGCCCTAGAGTCCAG-GCTCGCCGGAGGCACCaagcgtgtgcgggccgggagcgccgtcttctggggaaggagtgtcattagttacactttttt------gtttatgttgcggatcgatgaaagaaaaactgtgtgacgcttcagagatggggatccccaaggaagaagagagaacagcgatcagggcctt--aaacctcacacc-gaacaaattcggccggagtt--actgagcggcaggctctc-tgatggagatgggtgctt-tcagactgtaagacgtgaaaacaaagagcagccactca-gaacgaactcaagacttactgagatgcaactgccttgaaaaagcgggtgca-----tggtggggggtctgtctacctacttagaaggactactatggcctgtgcagagatccgaagtttgttctcattataatgcggac--ggtcaatgct-aatactgt---ggcccatttttcaatagcgccaccttgtggcagtga-caaaatggccgtagtggacttgggctcaggtgctttcttga--gtgtgcaagctgATAAGAACTCAATTTTTGAATCTGAGATTTAGAGATTATTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171515017 549 - 171630274 TC-CAAGTGGCGCTGCGGTCGAG-GCTCGC-GAAGGCAAGGCAAGCCGGCAGGCCGGGAGCACCGCCTGCTGGGGAAGGGTTGTCATTAGCTACGCTTTTGG-------TTCTCCTTGAGGACTGATGAAGGAAAACATGTGTGG-GCTGTGGAGATGTGGATCCCCAAGGAGGAAGCGACAACAGCTGTCAGGGCCTT--GAAA--CACACGCGAA----------TGGAGTT--AATGAGCGGCAGGCGCTC-TGATGGAGATGGAGGCTTCTCAGACTGCAGGACGTGA-AGCGAAGATCAGTCACTCC-----GAACGCAGGGCTCACTGAGATGCGACTGCCATGAAAAAGCGGCTGCG-----GGGTCGGGGGTCTGTCCAcctccttagaaggaccaccgtggcctctgcagagaccctaac-----ggttattacaacgtgggc--gtttagtgct-tgtaagct---ggaccatttttcaatagcgccaccttgtggcagtga-caaaatggccgtagtggacttgggctcaggtgcttatc------agtgcaaactgat---cagtcattttttgaatctgagatttggagataattc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            337035 554 -    375362 TC-CAAGTGGCGCTGCGGTCCAG-GCTCGC-GAAGGCACCGCAAGCCGGCAGGCCGGGGGCACCGCCTGCgggggaagggttgtcattacttacactttttg-------tttttcttgagggttaatgaaggaaaaaatgcgtgg-gctgcggagatgtggatccccaaggaggaagagagaacagcagtcagggcctt--gaacctcacacccgaa----------tggagtt--aatgagcggcaggcgctc-tgacggagatgtaggcttttcagattgcaagacgtga-aacaaagatgagtcactcc-----gaacgcagggctcactgagatgcgactgccatgagaaagcggctgcg-----aggtctgggatctgcccacctccttagaaggaccaccgtggcctctgcagaggtccgaacagt-tggttatt-caacgtgggc--ggtcagtgcc-tatactct---ggaccatttctccatcgcgccaccttgtggcagtga-gaaaatggctgtagtgggcttgggctcaggtgcttgtc------agtgcaaactgat---cactcacgttttgaatctgagatttggagataattc
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1650094 566 -   2232465 ----AAGTGGTCTTGGAGTCTTG-GCTCGCGGGAGGCTCCGAGGACGCGCGGGTGGGGAGCGCCACCTTCTGGGGAAGGGCTGTAATTAACTATACTTGGTTTTTGAGGGTTTTTTTGAGAATCAATGAAGGAAAGAC----TGTCACTACGGAAATCGGAATCCCCAAGGAGAAACAGGGAACATTAATCAGGACCTCCAAAACCCCGTGGGGGAGCAAACTTTACCAGAGTT--ATTGGGCTGCAGGCTTTC-TGATGG------GTGCTTTTCGGACCGGAAGACCTGAGAATTAAGATCGGCCTCTAA-----GAACGCTGGGCTCACTGAGGTACAATTGTTATGAAAA---------------AAGGGAGAGGGCTGTCTGTCTCCTTAGAAGGATCTTCGTGGCCTGCTTGTGGAAC---ACTTAGTTCTCATTACAGTGACCGCCGGGTCAGTGCT-TATCCCGtggaggaccattt-tcaatagtgttaccttactgcacggagaaaaatggcagtggtgaacttagacttgagttctttctttgttgggtgcaaactgatatgaattcatttttggaacccgaaatttggagatcattc
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I

a score=730212.000000
s hg38.chr6_GL000254v2_alt    283145 122 +   4827813 aggcagaaggggatccctaaatggaaacac----tgacatt---ttaatactgcaagtgggggatgatgaacagaca-aataac---------aagcaatggggggccacatttgtgttcagaattcatggaac-ttt--tt
s panTro5.chr6              29258318 122 + 175400573 aggcagaaggggatccctaaatggaaacac----tgacatt---ttaatactgcaagtgggggatgatgaatagaca-aataac---------aagcaatggggggccacatttgtgttcagaattcatggaac-TTt--tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29504386 122 + 173848474 AGGCAGAAGGGGATCCCTAAATGGAAACAC----TGACATT---TTAATACTGCAAGTGGGGGATGATGAATAGACA-AATAAC---------AAGCAATGGGGGGCCACGTTTGTGTTCAGAATTCATGGAAC-ttt--tt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5304715 120 +   6154872 aggcagaaggggatccctaaatggaaacac----tgacatt---ttaatactgcaagtgggggatgatgaatagaca-aataac---------aagcaat-gggggccacatttgtgttcagaattcatggaac-TTT--T-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74308192 113 + 122973662 AGGTAGAAGGGGATCCCTAAATGGAAAC-------GACATT---TTAATACTGCAAGTGGAGGATGATGAATAGACA-AAT------------AAGCAAT---GGGCCACATTTGTGTTCAGAATTCGTGGAAt-ttt--tt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29471510 128 + 172585720 gggcagaaggagatccctaaatataaacac----tgacattttgttaatactgcaagtggggaatgatgaatagaca-aataacaataaa-gaaagtaat---gggccacatttctgttcagaattcatggaac-TTT----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29132629 128 - 170955103 gggcagaaggagatccctaaatataaacac----tgacattttgttaatactgcaagtggggaatgatgaatagaca-aataacaataaa-gaaagtaat---gggccacatttctgttcagaattcatggaac-TTT----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2122580 130 -   2996164 gggcagaaggagatccctaaatataaacac----tgacattttgttaatactgcaagtggggaatgatgaatagaca-aataacaataaa-gaaagtaat---gggccacatttctgttcagaattcatggaac-TTTTT--
i macNem1.NW_012011356v1   C 0 I 2940
s cerAty1.NW_012001495v1     1990895 128 -   2157725 GGGCAGAAGGAGATCCCTAAATGTAAACAC----TGACATTTTGTTAATACTGCAAGTGGGGAATGATGAATAGACA-AATAACAATAAA-GAAAGTAAT---GGGCCACATTTGTGTTCAGAATTCATGGAAC-TTT----
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2133549 128 +   2316924 GGGCAGAAGGAAATCCCTAAATGTAAACAC----TGACATTTTGTTAATACTGCAAGTGGGGAATGATGAATAGACA-AATAACAATAAA-GAAAGTAAT---GGGCCACATTTGTGTTCAGAATTCATGGAAC-TTT----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1999309 128 -   3067355 GGGCAGAAGGAGATCCCTAAATGTAAACAC----TGACGTTTTGTTAATACTGCAAGTGGGGAATGATGAATAGACA-AATAACAATAAA-GAAAGTAAT---GGGCCACGTTTGTGTTCAGAAGTCATGGAAC-TTT----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171515566 130 - 171630274 aggcagaaggggatccctaagtggaaacaa----tgacgttttgttaatactgcaagtgggagatgatgaatagaca-aataaCAATAAA-GAAAGCAAT---GGGCCCCGTTTATGTTCAGAATTCACGGAAA-TTT--TT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            337589 130 -    375362 aggcagaaggggatccctaagtggaaacaa----tgacattttgttaatactgcaagtggg-gatgatgaatagact-aataacaataaa-gaaagcaat---gggccacatttatgttccgaattcatggaAATTTT--TT
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1650660 132 -   2232465 agggggaagggtacctccaaatggatacactgggtgatctt---ttaatactgcaagtgACATGTTATGCATTAACACAAAAATAATAAATAAAAACAAT---GGACCA-ATTTGTGTTCAGAATTCATGAAAC-TTT--TT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e chlSab2.chr17             28429013 1945 -  71996105 I

a score=3088.000000
s hg38.chr6_GL000254v2_alt    283267 3 +   4827813 ttt
s panTro5.chr6              29258440 1 + 175400573 t--
i panTro5.chr6             C 0 C 0
s nomLeu3.chr1a             74308305 3 + 122973662 ttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29471638 3 + 172585720 TTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29132757 3 - 170955103 TTA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1991023 3 -   2157725 TTT
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2133677 3 +   2316924 TTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1999437 3 -   3067355 TTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171515696 3 - 171630274 TTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            337719 3 -    375362 TTG
i saiBol1.JH378348         C 0 C 0
s otoGar3.GL873742           1650792 3 -   2232465 TTT
i otoGar3.GL873742         C 0 I 7699
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e chlSab2.chr17             28429013 1945 -  71996105 I
e macNem1.NW_012011356v1     2122710 2940 -   2996164 I
e gorGor5.CYUI01015250v1     5304835 0 +   6154872 C
e panPan2.chr6              29504508 0 + 173848474 C

a score=107726.000000
s hg38.chr6_GL000254v2_alt    283270 25 +   4827813 ttgatttttctatttctcatttttt
s panTro5.chr6              29258441 21 + 175400573 ----tttttctatttcttatttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29504508 21 + 173848474 ----tttttctatttcttatttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5304835 21 +   6154872 ----TTTTTCTATTTCTTATTTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74308308 23 + 122973662 ta--tttttctatttctcatttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29471641 25 + 172585720 AAAATTTTTCTATTTCTCATTTTTT
i rheMac8.chr4             C 0 I 10
s macFas5.chr4              29132760 25 - 170955103 AAAATTTTTCTATTTCTCATTTTTT
i macFas5.chr4             C 0 I 2
s cerAty1.NW_012001495v1     1991026 25 -   2157725 TTGATTTTTCTATTTCTCATTTTTT
i cerAty1.NW_012001495v1   C 0 I 10
s manLeu1.NW_012104165v1     2133680 25 +   2316924 TTGATTTTTCTATTTCTCAtttttt
i manLeu1.NW_012104165v1   C 0 I 10
s colAng1.NW_012115566v1     1999440 25 -   3067355 TTGATTTCTCTATTTCTCATTTTTT
i colAng1.NW_012115566v1   C 0 I 14
s calJac3.chr4             171515699 23 - 171630274 TTGATTTTTC--TGTCTCAtttttt
i calJac3.chr4             C 0 I 9
s saiBol1.JH378348            337722 25 -    375362 TTGGTTTTTCTATGTCTCAtttttt
i saiBol1.JH378348         C 0 I 9
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e chlSab2.chr17             28429013 1945 -  71996105 I
e macNem1.NW_012011356v1     2122710 2940 -   2996164 I

a score=24383.000000
s hg38.chr6_GL000254v2_alt    283295 18 +   4827813 tAAtgtatgtattttgag
s panTro5.chr6              29258462 18 + 175400573 taatgtatgtattttgag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29504529 18 + 173848474 tAAtgtatgtattttgag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5304856 18 +   6154872 TAAtgtatgtattttgag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74308331 18 + 122973662 tGAtgtatgtattttgag
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29132787  8 - 170955103 TGGTGCAT----------
i macFas5.chr4             I 2 C 0
s calJac3.chr4             171515731 18 - 171630274 taacgaatgcattttgag
i calJac3.chr4             I 9 C 0
s saiBol1.JH378348            337756 17 -    375362 taatgaatgca-tttgag
i saiBol1.JH378348         I 9 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e colAng1.NW_012115566v1     1999465 14 -   3067355 I
e manLeu1.NW_012104165v1     2133705 10 +   2316924 I
e chlSab2.chr17             28429013 1945 -  71996105 I
e cerAty1.NW_012001495v1     1991051 10 -   2157725 I
e macNem1.NW_012011356v1     2122710 2940 -   2996164 I
e rheMac8.chr4              29471666 10 + 172585720 I

a score=13566.000000
s hg38.chr6_GL000254v2_alt    283313 4 +   4827813 ggta
s panTro5.chr6              29258480 4 + 175400573 ggta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29504547 4 + 173848474 ggta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5304874 4 +   6154872 ggta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74308349 4 + 122973662 ggta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29471676 4 + 172585720 AATA
i rheMac8.chr4             I 10 C 0
s macFas5.chr4              29132795 4 - 170955103 AAta
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1991061 4 -   2157725 aata
i cerAty1.NW_012001495v1   I 10 C 0
s manLeu1.NW_012104165v1     2133715 4 +   2316924 aata
i manLeu1.NW_012104165v1   I 10 C 0
s calJac3.chr4             171515749 4 - 171630274 ggta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            337773 4 -    375362 ggta
i saiBol1.JH378348         C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e colAng1.NW_012115566v1     1999465 14 -   3067355 I
e chlSab2.chr17             28429013 1945 -  71996105 I
e macNem1.NW_012011356v1     2122710 2940 -   2996164 I

a score=539995.000000
s hg38.chr6_GL000254v2_alt    283317 184 +   4827813 catgtaatattttgata--c------ataacgtataaaggtcaaagataaggataatttgtgtgtgtgtgtatatatatgtat-----------------------aaac-ttaaa----tgtc----ctttttgcttggaacgttcaaa---tttttttctagttatatctaaata----tat--------aTCAAGCAAtctttta--------------------gatat-tt--tgaaatgtc-taa-------------------cattattttgag
s panTro5.chr6              29258484 192 + 175400573 catataatattttgata--cat----ataacgtataaaggtcaaagataaggataatttgtgtgtgtgtgtatatatatgtat-----------------------aaac-ttaaa----tgtc----ctttttgcttggaacgttgaaa---tttttttctagctatatctaaatataTCTAT--------ATCAAGCAAtctttta--------------------gatat-tttgtgaaatgtc-taa-------------------tattattttgag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29504551 192 + 173848474 catataatattttgata--cat----ataacgtataaaggtcaaagataaggataatttgtgtgtgtgtgtatatatatgtat-----------------------aaac-ttaaa----tgtc----ctttttgcttggaacgttcaaa---tttttttctagctatatctaaatatGTCTAT--------ATCAAGCAAtctttta--------------------gatat-tttgtgaaatgtc-taa-------------------cattattttgag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5304878 189 +   6154872 catgtaatattttgata--cat----ataacgtataaaggtcaaagataaggataatttgtgtgtgtgtgtatatatatgtat-----------------------aaac---aaa----tgtc----ctttttgcttggaacgttcaaa---tttttttctagctatatctaaatataTCTAT--------ATCAAGCAATCTTTTA--------------------GATAT-TT--TGAAATGTCTTAA-------------------CATTAttttgag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74308353 188 + 122973662 catgtaatattttgata--cattcagataatgtataaagatcaaagataaggataatttgtatatatgtgtgtata----tat-----------------------aaac-ttaaa----tgtc----ctttttgcttggaacgttcaaa---ttcttttctagctatatctgaaTATGTCTAT--------ATCAAGCAATC--Tta--------------------ggtat-tt--tgaaatgtc-taa-------------------aattattttgag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29471680 231 + 172585720 CATGTAATATTTTGACATTCAT----ATAATGTATAAAGATCAAAGATAAGGATAACTTGTGTGTGTGTGTGTATATATATATATAAA------------------AAaccttaaatgtttatcctttctttttgctgggaacatttgaattattcttctctagatatatctaaatataTCTATATCTATAGATCAAGCAATCTTTTA--------------------GGTAT-TT--TGAAATGTC-TAATAGA-----TTATTATTATTATTAttttgag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29132799 231 - 170955103 catgtaatattttgacattcat----ataatgtataaagatcaaaaataaggataacttgtgtgtgtgtgtgtatatatatataaaaa------------------aaaccttaaatgtttatcctttctttttgctgggaacatttgaattattcttctctagatatatctaaatataTCTATATCTATAGATCAAGCAATCTTTTA--------------------GGTAT-TT--TGAAATGTC-TAATAGA-----TTATTATTATTATTAttttgag
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1991065 235 -   2157725 catgtaatattttgacattcat----ataatgtataaagatcaaagataaggataacttgtatgtgtgtgtgtatatatatacatata------tatataCACGTGAAaccttaaa----tatcctttctttttgctgggaacattcgaattcttcttctctagatgtatctaaataCATCTATATCT----ATCAAGCAATCTTTTA--------------------GGTAT-TT--TGAAATGTC-TAATGGA-----TTATTATTATTATTAttttgag
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2133719 241 +   2316924 catgtaatattttgacattcat----ataatgtataaagatcaaagataaggataacttgtatgtgtgtgtgtatatatatatatatatatatatatatacacgtgaaaccttaaa----tatcctttctttttgctgggaacattcgaattcttcttctctagatgtatctaaatacatctatatct----atcaagcaatctttta--------------------ggtat-tt--tgaaatgtc-taatgga-----ttattattattattattttgag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1999479 200 -   3067355 catgtaatattttgatattcat----ataatgtataaagattaaagataaggataaggtgtatgtgtgtatatatat-tatatctata------tatata------aaaccttaaatgtttatcctttctttttgctgggaacattcgaa---ttcttctctagatatatctaaatataTCTATATCTATATATCAAGCAAtctttta--------------------ggtat-tt--tgaaa---------------------------------------
i colAng1.NW_012115566v1   I 14 C 0
s calJac3.chr4             171515753 227 - 171630274 caattaatattttggta--cattaatataatgtgtaaaaatcaaagataaggataattggtatttatctgtatatatact--------------------------aagc----aa----t-------cttttagat----attttgaaa---tgtctaatagattatat-taattatagtcac-cttacggacctattgaactctggtcttcttttttctatctaatagtatatt--tgtaccttt-taaccaacctcttttttttttttttttttttgag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378348            337777 124 -    375362 caattaatattttggta--cattaatataatgtataaaaatcaaagataaggataattggtatttatcgatatgtatatt--------------------------aagc----aa----t-------ctttta----------------------------------------------------------------------------------------------ggtat-tt--tgaaatgtc-tgataga-----------------ttatattaag
i saiBol1.JH378348         C 0 N 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e chlSab2.chr17             28429013 1945 -  71996105 I
e macNem1.NW_012011356v1     2122710 2940 -   2996164 I

a score=253216.000000
s hg38.chr6_GL000254v2_alt    283501 63 +   4827813 acagagtctagcac-tgtcacccaggctggagtgcaatggcgtgatctcgactcactgcaaccg
s panTro5.chr6              29258676 63 + 175400573 acagagtctagcac-tgtcacccaggctggagtgcaatggcgtgatctcgactcactgcaaccg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29504743 63 + 173848474 acagagtctagcac-tgtcacccaggctggagtgcaatggcgtgatctcgactcactgcaaccg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5305067 63 +   6154872 acagagtctagcac-tgtcacccaggctggagtgcaatggcgtgatctcgactcactgcaaccg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74308541 63 + 122973662 acagagtctagcgc-tgtcacccaggctggagtgcaatggcgtgatctcgactcactgcaaccg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29471911 63 + 172585720 acggagtctagcac-tgtcacccaggttggagtgcaatcgcccgatctcggcccactgcaaact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29133030 63 - 170955103 acggagtctagcac-tgtcacccaggttggagtgcaatcgcccgatctcggcccactgcaaact
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1991300 63 -   2157725 atggagtctagcac-tgtcacccaggttggagtgcaatggcctgatctcggcccgctgcgacct
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2133960 63 +   2316924 atggagtctagcac-tgtcacccaggttggagtgcaatggcctgatctcggcccgctgcgacct
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     1999679 49 -   3067355 ---------------tgtcacccaggttggagtgcaatggcccgatctcggcccactgcaacct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171515980 64 - 171630274 acggagtttcgctcttgttacccaggctggagtgcaatggcgccatctcggctcaccacaactt
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e chlSab2.chr17             28429013 1945 -  71996105 I
e macNem1.NW_012011356v1     2122710 2940 -   2996164 I

a score=2957776.000000
s hg38.chr6_GL000254v2_alt    283564 886 +   4827813 ctgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcatacgccatcacaccgggccaa-tttttatatttttagtagaggcggggtttcaccatgttggtcaggctggtcttgaactcctgacctcgtgatcgg-ccacctctgcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagccagaagtgtctaatagat---------tatagtcaccctactgatctattgaactctggttgtctttcttctacctaattgtatacttataccgtttaaccaacctctctttatcccacgtcttccctcctctttccaggccctgataaccaccattgtactccctagcttcatgagatcttctgttttagctcccacataggagtgagaacatgcagtattCatgaatcacactcatc---atgagcgatcttctt----ggttgttgaattggggttgctagttatt---ttgagaatttttgtatctatgttcatcagggattttggcctgtagttttgtttttgatttgatttctgacacagattttgctgtatccttgtctggttttcacatcaggg--caatgctggccttgtagaatgagtttagaggaataccctcctcttcaatttttttttaaaagagtttgagtagaattggtatcagttctctaaatatttgctagaattcagcagtgaggccataatgtcctgggcttttctttgatgagagacttt---attaaggcttcaatttcattactcataattggtttgttagggtt-----tctattcatggttcaatcttagtacgttgtatatgtttaataatttatccattttttctatgttttccaatttgttggtgtatagttgttc
s panTro5.chr6              29258739 895 + 175400573 ctgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcatacgccatcacaccaggccaa-tttttatatttttagtagaggcggggtttcaccatgttggtcaggctggtcttgaactcctgacctcgtgatcgg-ccacctctgcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagccagaaatgtctaatagat---------tatagtcaccctactgatctattgaactctggttgtctttcttctacctaattgtatacttacaccgtttaaccaacctctctttatcccacgtcttccctcctctttccaggccctgatgaccaccattgtactccctagcttcatgagatcttctgttttagctcccacataggagtgagaacatgcagtattCatgaatcgcactcatc---atgagcgatcttcttagtgggttgttgaattggggttgctagttattttgttgagaatttttgtatctatgttcatcagggattttggcctgtagttttgtttttgatttgatttctgacacagattttactgtatccttgtctgggtttcgcatcagggcacaatgctggccttgtagaatgagtttagaggaatactctcctcttcaattttttttaaaaagagtttgagtagaattggtatcagttctctaaatatttgctagaattcagcagtgaggccataatgtcctgggcttttctttgttgagagacttt---attaaggcttcaatttcattactcattattggtttgttgaggtt-----tctattcatggttcaattttagtacgttgtatatgtttaataatttatccattttttctatgttttccaatttgttggtgtatagttgttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29504806 895 + 173848474 ctgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcatacgccatcacaccaggccaa-tttttatatttttagtagaggcggggtttcaccatgttggtcaggctggtcttgaactcctgacctcgtgatcgg-ccacctctgcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagccagaaatgtctaatagat---------tatagtcaccctactgatctattgaactctggttgtctttcttctacctaattgtatacttacaccgtttaaccaacctctctttatcccacgtcttccctcctctttccaggccctgatgaccaccattgtactccctagcttcatgagatcttctgttttagctcccacataggagtgagaacatgcagtattCatgaatcgcactcatc---atgagcgatcttcttagtgggttgttgaattggggttgctagttattttgttgagaatttttgtatctatgttcatcagggattttggcctgtagttttgtttttgatttgatttctgacacagattttactgtatccttgtctgggtttcgcatcagggcacaatgctggccttgtagaatgagtttagaggaataccctcctcttcaattttttttaaaaagagtttgagtagaattggtatcagttctctaaatatttgctagaattcagcagtgaggccataatgtcatgggcttttctttgttgagagacttt---attaaggcttcaatttcattactcattattggtttgttgaggtt-----tctattcatggttcaattttagtacgttgtatatgtttaataatttatccattttttctatgttttccaatttgttggtgtatagttgttc
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74308604 883 + 122973662 ctgcctcctaggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcacacgccaccacaccaggccaa-tttttatatttttagtagaggtggggtttcaccatgttggtcaggctggtcttgaactcctgacctcgtgatcgg-ccgcctctgcctcccaaagtgctgagattacaggcgtgagccactgtgcccagccagaaatgtctaacagat---------tatagtcaccctagtgatctattgaactctggttgtcttccttctacctaattgtatacttagaccggttaaccaacctctc--taccccacctcttccctccgctttccaggctctgataaccaccattgtactccctagcttcatgagatgttatgttttagctcccacgtagcagtgagaacatgaagtattCatgaatcccactaatg---atgagcgatctttttagtgggttgttgagttggggttgctagttattttgttgagaatttttgcatctgtgttcgtcagggatttgggcctgtagtt---ttttttatttgatttcggacacagattttgctgtatccttgtctggttttcgcatcaggg--caatgctggccttgtagaatgagtttagaggaataccctcctcttcaaattttttttaaaagagtttgaacagaattggtattagttctctaaatatttgctagaattcagcggtgaggccataatttcctgggcttttctttgatgacagactttttatttaaggcttcaattttattactc---attggtttgttgaggtt-----tctattcatagttcaatcttagaacgttgtatatgtttaataatttatccattttttc--tgttttccaatttgttggtgtata---gttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29471974 889 + 172585720 ccgcctcctgggttcaagagattctcctgccttagcctcccaagtagctgggattacaggcacacaccaccacgcccggccaa-tttttgtatttttagtagaggcggggtttcaccatgttggtcacgctggtcttgaactcctgacctcgtgatccgcccacctcggcctcccaaagtgctggaattacaggcgtgagccaaggtgcccagccAgaaatttctaatagattatattaactatagtcaccctactgatctattgaactctggtcttctttcttctatctaattgtatatttataccctttaaccacccactctttatccccgctcttccttccccttcccagcctctgataaccaccaatgtactctctagcttcatgagatctactgttttagctcccacataggagtgagaacatgcagtattCatggatcccactcatcatgatgagcgatcttcataatgggttgttgaatt-gggttgctagttattttgttgagaagttttgcatctatgttcatcaggggttttggcctgcagttttcttt----------------------gtttgctgtatccttgtctggttttggcatcaggg--taatgctggccttgtagaatgagtttaggggtatatcctcctcttcaatttttttttaaaagagtttgagtagaa-tggtattagttctctaaatatttgctagaattcagcagtgaggccttaatgtcctgtgcttttctttgatgagtgacttttt-attaaggcttcaatttcattactcattattggtttgctgaggctttctatttattcatggttcaatcttagtaggttgtatatgtttaataatttatccatttcttctatgttttccaatttgttggtgtatagttgttc
i rheMac8.chr4             C 0 I 3
s macFas5.chr4              29133093 889 - 170955103 ccgcctcctgggttcaagagattctcctgccttagcctcccaagtagctgggattacaggcacacaccaccacgcccggccaa-tttttgtatttttagtagaggcggggtttcaccatgttggtcacgctggtcttgaactcctgacctcgtgatccgcccacctcggcctcccaaagtgctggaattacaggcgtgagccaaggtgcccagccAgaaatttctaatagattatattaactatagtcaccctactgatctattgaactctggtcttctttcttctatctaattgtatatttataccctttaaccacccactctttatccccgctcttccttccccttcccagcctctgataaccaccaatgtactctctagcttcatgagatctactgttttagctcccacataggagtgagaacatgcagtattCatggatcccactcatcatgatgagcgatcttcataatgggttgttgaatt-gggttgctagttattttgttgagaagttttgcatctatgttcatcaggggttttggcctgcagttttcttt----------------------gtttgctgtatccttgtctggttttggcatcaggg--taatgctggccttgtagaatgagtttaggggtatatcctcctcttcaatttttttttaaaagagtttgagtagaa-tggtattagttctctaaatatttgctagaattcagcagtgaggccttaatgtcctgtgcttttctttgatgagtgacttttt-attaaggcttcaatttcattactcattattggtttgctgaggctttctatttattcatggttcaatcttagtaggttgtatatgtttaataatttatccatttcttctatgttttccaatttgttggtgtatagttgttc
i macFas5.chr4             C 0 I 3
s cerAty1.NW_012001495v1     1991363 884 -   2157725 ctgcctcctgggttcaagagattctcctgccttagcctcccaagtagctggggttacaggcacacgccaccacgcccggccaa-tttttgtatttttagtagaggcggggtttcaccatgttggtcaggctggtcttgaactcctgacctcgtgatccgcccacctcggcctcccaaagtgctggaattacaggcttgagccaacgcgcccagccAgaaatttctaatagattatattaactatagtcaccctactgatttattgaactctggtc----ttcttctatctaattgtgtatttataccctttaaccaaccactctttatcccc-cacttccttccccttcccagcctctgataaccaccaatgtactctctagcttcatgagatctactgttttagctcccacataggagtgagaacctgcggtattcatggatcccattcatcatgatgagcgatcttcttaatgggttgttgaattggggttgctagttattttgttgagaatttttgcatctatgttcatcaggggttttggtctgcagttttcttt----------------------gtttgctgtatccttgtctggttttggcaccaggg--taatgctggccttgtagaatgagtttagaggtatatccttctcttcaa-ttttttttaaaagagtttgagtagga-tggtattagttctctaaacatttgctagaattcagcagtgaggccataatgtcctgtgcttttctttgatgagtaacttttt-attaaggcttcaatttcactactcattattggtttgctgaggctttctatttattcatggttcaatcttagtaggttgtatatgtttaataatttatccatttcttctatgttttccaatttgttggtgtatagttgttc
i cerAty1.NW_012001495v1   C 0 I 3
s manLeu1.NW_012104165v1     2134023 885 +   2316924 ctgccttctgggttcaagagattctcctgccttagcctcccaagtagctggggttacacgcacacgccaccacgcccggccaa-tttttgtatttttagtagaggcagggtttcaccatgttggtcaggctggtcttgaactcctgacctcgtgatctgcccacctcggcctcccaaagtgctggaattacaggcgtgagccaacgcgcccagccagaaatttctaatagattatattaactatagtcaccctactgatttattgaactctggtc----ttcttctatctaattgtgtatttataccctttaaccaaccactctttatcccc-cacttccttccccttcccagcctctgataaccaccaatgtactctctagcttcatgagatctactgttttagctcccacataggagtgagaacatgcggtattcatggatcccgttcatcatgatgagtgatcttcttaatgggttgttgaattggggttgctagttattttgttgagaatttttgcatctatgttcatcaggggttttggtctgcagttttcttt----------------------gtttgctgtatccttgtctggttttggcaccaggg--taatgctggccttgtagaatgagtttagaggtatatcctcctcttcaatttttttttaaaagagtttgagtagga-tggtattagttctctaaacatttgctagaattcagcagtgaggccataatgtcctgtgcttttctttgatgagtaacttttt-attaaggcttcaatttcactactcattattggtttgctgaggctttctatttattcatggttcaatcttagtaggttgtatatgtttaataatttatccatttcttctatgttttccaatttgttggtgtatagttgttc
i manLeu1.NW_012104165v1   C 0 I 3
s colAng1.NW_012115566v1     1999728 888 -   3067355 ccgcctcctgggttcaagagattctcctgccttagcctcccaagtagctgggattacaggcacacgccaccacgcccggccaa-tttttgtatttttagtagaggc-gggtttcaccatgttggtcaggctggtcttgaactcctgacctcgtgatccgcccacctcggcctcccaaagtgctggaattacaggcgtgagccaacgtgcccagctagaaatttctaatagattatattaactatagtcaccctactgatctattgaactctggtcttctttcttctatctaattgtatatttataccctttaaccaaccactctttatcccccctcttccttccccttcccagcctctgataaccaccaatgtactctctagcttcatgagatctactgttttagctcccacataggagtgagaacatgcagtattCatggatcccactcatcatgatgagcgatcttcttaatgggttgttgaattggggttgctagttattttgttgagaatttttgcacctatgttcatcaggggttttggcctgcagttttcttt----------------------gtttgctgtatccttgtctggttttggcatcaggg--taatgttggccttgtagaatgagtttagagatatatcctcctcttcaa-tatttttaaaaagagttcgagtagaa-tggtattagttctctaaatatttgctagaattcagcagtgaggccataacgtcctgtgcttttctttgatgagtgacttttt-atcaaggcttcaatttcattactcattattggtttgttgaggctttctatttattcatggttcaatcttagtaggttgtatatgtttaataatttatccatttctactatgttttccaatttgttggtgtatagttgttc
i colAng1.NW_012115566v1   C 0 I 14
s calJac3.chr4             171516044 763 - 171630274 ctgcctcctgggttcaggcaattctccggcttcagcctcccgagcagctgggactacaggcacgcgccaccatgctcagctaattttttgtatttttagtagagacggggttttatcatgttgaccatgatggtctcgatctcttgacctggtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcctggcc--------------------------------------------------------------------------------------------------ccagcctctctttatccc-------ccctcccattcccagcctctgatcaccaccaatctactctccagcttcattagatctactgttttagttcccacataggagtgagaacaggcagtatttatgaatcccactcatcacgatgagcagtcttcgtagtgggttgttgagttggggttgctagttattttgttgagaatcttttcatctgtgttcatcagggattttggcctgtagttttcttt----------------------gttttttgtatccttgcctggttttggtaccaggg--taatgctggccttacagaatgagt-------------------ttcaa-tttttttaaaaggagtctgagtagaattggtattagttctttaaatatttgctagaattcagcactgaagctgtaaggtcctgggcttttctttaatgagagacttttt-attaaagcttcagttttattacttatggttagtttg---aggctttctctttcttcatggttcaatcttagtaggttgtacacgtttagtaatttatccatttcttctatgttttccag-ttgctggtatatagttgttc
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e chlSab2.chr17             28429013 1945 -  71996105 I
e macNem1.NW_012011356v1     2122710 2940 -   2996164 I
e gorGor5.CYUI01015250v1     5305130   0 +   6154872 C

a score=20195.000000
s hg38.chr6_GL000254v2_alt    284450  8 +   4827813 ---atattctc
s panTro5.chr6              29259634  8 + 175400573 ---atattctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29505701  8 + 173848474 ---atattctc
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74309487  8 + 122973662 ---atagtctc
i nomLeu3.chr1a            C 0 I 3
s rheMac8.chr4              29472866  8 + 172585720 ---acagtctc
i rheMac8.chr4             I 3 I 3
s macFas5.chr4              29133985  8 - 170955103 ---acagtctc
i macFas5.chr4             I 3 I 3
s cerAty1.NW_012001495v1     1992250  8 -   2157725 ---acagtctc
i cerAty1.NW_012001495v1   I 3 I 3
s manLeu1.NW_012104165v1     2134911  8 +   2316924 ---acagtctc
i manLeu1.NW_012104165v1   I 3 I 3
s calJac3.chr4             171516807 11 - 171630274 ataatagtctc
i calJac3.chr4             C 0 I 3
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e colAng1.NW_012115566v1     2000616 14 -   3067355 I
e chlSab2.chr17             28429013 1945 -  71996105 I
e macNem1.NW_012011356v1     2122710 2940 -   2996164 I
e gorGor5.CYUI01015250v1     5305130  0 +   6154872 C

a score=349049.000000
s hg38.chr6_GL000254v2_alt    284458 123 +   4827813 tgattctttgtatttttgtggtct--gttatatctctttttttttctttctgattgatttatttaggtt------tctcttttttagtctagggaaaggtttgttaattttgtctatc--ttcaaaaaatcaa
s panTro5.chr6              29259642 121 + 175400573 tgattctttgtatttttgtggtct--gttata----tttttttttcttcctgattgatttatttgggtt----tctctcttttttagtataggaaaaggtttgttaattttgtctatc--ttcaaaaaatcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29505709 123 + 173848474 tgattctttgtatttttgtggtct--gttata--tttctttttttcttcctgattgatttatttgggtt----tctctcttttttagtataggaaaaggtttgttaattttgtctatc--ttcaaaaaatcaa
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74309498 112 + 122973662 tgatcctttgtatttttgtggtct--cagtta----tctttttttctttctgattgatttatttgagtt---------gttttttagtctaggaaaaggtttcttaattttg----tc--ttcaaaaaatcaa
i nomLeu3.chr1a            I 3 M 170
s rheMac8.chr4              29472877 128 + 172585720 tgattctttgtatttttgtggtctcagttata--tctctttttttcccctgattttatttatttgggttg---tttctcttttttagtctaggaaaagatttgttagttttgtttatcttttcaaaaagtcaa
i rheMac8.chr4             I 3 C 0
s macFas5.chr4              29133996 128 - 170955103 tgattctttgtatttttgtggtctcagttata--tctctttttttcccctgattttatttatttgggttg---tttctcttttttagtctaggaaaagatttgttagttttgtttatcttttcaaaaagtcaa
i macFas5.chr4             I 3 C 0
s cerAty1.NW_012001495v1     1992261 128 -   2157725 tgattctttgtatttttgtggtctcagttata--tctctttttttttcctgattttatttatttgggttg---tttctcttttctagtctaggaaaagatttgttagttttgtttatcttttcaaaaagtcaa
i cerAty1.NW_012001495v1   I 3 C 0
s manLeu1.NW_012104165v1     2134922 124 +   2316924 tgattctttgtatttttgtggtctcagttata--tctctttttttttcttgattttatttatttgggttg---tttctcttttttagtctaggaaaagatttgttagt----tttatcttttcaaaaagtcaa
i manLeu1.NW_012104165v1   I 3 C 0
s colAng1.NW_012115566v1     2000630 127 -   3067355 tgattctttgtatttttgtggtctcagttata--tctctttttttttc-tgattttatttatttgggttg---tttttcttttttagtctaggaaaagatttgttaattttgtttatcttttcaaaaaatcaa
i colAng1.NW_012115566v1   I 14 C 0
s calJac3.chr4             171516821 128 - 171630274 tgattttttgtatttctgtggtctcagttata--tctctcttttttttctttcttattttattttgggtggtttctctcttttttagtctaggaaaaggtttttcaatt---tttatcttttcaaaaaatcaa
i calJac3.chr4             I 3 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e chlSab2.chr17             28429013 1945 -  71996105 I
e macNem1.NW_012011356v1     2122710 2940 -   2996164 I
e gorGor5.CYUI01015250v1     5305130   0 +   6154872 C

a score=581210.000000
s hg38.chr6_GL000254v2_alt    284581 201 +   4827813 cttttcatttcattgatcaaatgtatttatgttttagtttcaatttcatttatgtctgttctgatattta-------tttctttctactaattttggatttggttcatccttgcttttttgagttccttgagatccatttttaggttgattatttgaagtcttttcccttttttgatgtaggtgtttattgctataaagatattgtta-
s panTro5.chr6              29259763 201 + 175400573 cttttcatttcattgatcaaatgtatttattttttagtttcaatttcatttatgtctgttctgatattta-------tttctttctactgattttgggtttggtttatccttgcttttttgagttccttgagatgcatttttaggttaatgatttgaagtcttttcccttttttgatgtaggtgtttattgctataaagttattgtta-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29505832 201 + 173848474 cttttcatttcattgatcaaatgtatttattttttagtttcaatttcatttatgtctgttctgatattta-------tttctttctactgattttgggtttggtttatccttgcttttttgagttccttgagatgcatttttaggttaattatttgaagtcttttcccttttttgatgtaggtgtttattgctataaagttattgtta-
i panPan2.chr6             C 0 C 0
s rheMac8.chr4              29473005 207 + 172585720 cttttcatttcattgatcagatgtatttattttttagtttcaatttcatttatttctgctctgatatttattatttcttcccttcaactaactttgagtttggtttatccttgc-tttttgagttccttgagatgcattcttaggttgattatttgaagtcctttcccttttttgatgtaggagtttattgctataaaattattgtta-
i rheMac8.chr4             C 0 I 694
s macFas5.chr4              29134124 207 - 170955103 cttttcatttcattgatcagatgtatttattttttagtttcaatttcatttatttctgctctgatatttattatttcttcccttcaactaactttgagtttggtttatccttgc-tttttgagttccttgagatgcattcttaggttgattatttgaagtcctttcccttttttgatgtaggagtttattgctataaaattattgtta-
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     1992389 207 -   2157725 cttttcatttcatttatcagatgtatttattttttagtttcaatttcatttatttctgctctgatatttattatttcttcccttctactaactttgagtttggtttatccttgt-tttttgagttccttgagatgcattcttaggttgattatttgaagtcctttcccttttttgatgtaggtgtttattgctataaaattattgtta-
i cerAty1.NW_012001495v1   C 0 I 686
s manLeu1.NW_012104165v1     2135046 207 +   2316924 cttttcatttcattgatcagatgtatttattttttagtttcaatttcatttatttctgctctgatatttattatttcttcccttctactaactttgagtttggtttatccttgc-tttttgagttccttgagatgcattcttaggttgattatttgaagtcctttcccttttttgatgtaggtgtttattgctataaaattattgtta-
i manLeu1.NW_012104165v1   C 0 I 686
s colAng1.NW_012115566v1     2000757 207 -   3067355 cttttcatttcattgatcagatgtatttattttttagtttcaatttcatttatttctgctctgatatttattatttctttccttctactaactttgggtttggttaatccttgc-tttttcagttccttgaggtgcattcttatgttgattatttgaagtcctttcccttttttgatgtaggtgtttattgctataaaattattgtta-
i colAng1.NW_012115566v1   C 0 I 1495
s calJac3.chr4             171516949 198 - 171630274 cttttcatttcgttgctcagatatatt----ttttggtctcaatttcatgtatttcttctctgatattt------tctttccttctactatttttgggtttggtttatccttgc-tttttgagttccttgagatgcactcttaggttgattatttgaagtcttttcccttttttgatgtaggtgtttattgctataaaattattgttta
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e chlSab2.chr17             28429013 1945 -  71996105 I
e macNem1.NW_012011356v1     2122710 2940 -   2996164 I
e nomLeu3.chr1a             74309610 170 + 122973662 M
e gorGor5.CYUI01015250v1     5305130   0 +   6154872 C

a score=18825.000000
s hg38.chr6_GL000254v2_alt    284782 27 +   4827813 tgctgtattctgtaggcttcggtatgt
s panTro5.chr6              29259964 27 + 175400573 tgctgtattctgtaggctttggtatgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29506033 27 + 173848474 tgctgtattctgtaggctttggtatgt
i panPan2.chr6             C 0 C 0
s macFas5.chr4              29134331 26 - 170955103 -gacaaattctgtaggctttggcatgt
i macFas5.chr4             C 0 C 0
s calJac3.chr4             171517147 27 - 171630274 ttctatattgtataggctttggtatgt
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e colAng1.NW_012115566v1     2000964 1495 -   3067355 I
e manLeu1.NW_012104165v1     2135253 686 +   2316924 I
e chlSab2.chr17             28429013 1945 -  71996105 I
e cerAty1.NW_012001495v1     1992596 686 -   2157725 I
e macNem1.NW_012011356v1     2122710 2940 -   2996164 I
e rheMac8.chr4              29473212 694 + 172585720 I
e nomLeu3.chr1a             74309610 170 + 122973662 M
e gorGor5.CYUI01015250v1     5305130  0 +   6154872 C

a score=14509.000000
s hg38.chr6_GL000254v2_alt    284809 14 +   4827813 tgtatatctatttt
s panTro5.chr6              29259991 14 + 175400573 tgtatatctatttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29506060 14 + 173848474 tgtatatctatttt
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74309780 14 + 122973662 tgtatttctatttc
i nomLeu3.chr1a            M 170 C 0
s macFas5.chr4              29134357 14 - 170955103 tgtatttctttttt
i macFas5.chr4             C 0 I 635
s calJac3.chr4             171517174 14 - 171630274 tatatttctacttt
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e colAng1.NW_012115566v1     2000964 1495 -   3067355 I
e manLeu1.NW_012104165v1     2135253 686 +   2316924 I
e chlSab2.chr17             28429013 1945 -  71996105 I
e cerAty1.NW_012001495v1     1992596 686 -   2157725 I
e macNem1.NW_012011356v1     2122710 2940 -   2996164 I
e rheMac8.chr4              29473212 694 + 172585720 I
e gorGor5.CYUI01015250v1     5305130  0 +   6154872 C

a score=8622.000000
s hg38.chr6_GL000254v2_alt    284823 13 +   4827813 cactagtttcatg
s panTro5.chr6              29260005 13 + 175400573 cactagtttcatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29506074 13 + 173848474 cactagtttcatg
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74309794  8 + 122973662 -----atttcatg
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171517188 13 - 171630274 cacttgtttcatg
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e colAng1.NW_012115566v1     2000964 1495 -   3067355 I
e manLeu1.NW_012104165v1     2135253 686 +   2316924 I
e chlSab2.chr17             28429013 1945 -  71996105 I
e cerAty1.NW_012001495v1     1992596 686 -   2157725 I
e macNem1.NW_012011356v1     2122710 2940 -   2996164 I
e macFas5.chr4              29134371 635 - 170955103 I
e rheMac8.chr4              29473212 694 + 172585720 I
e gorGor5.CYUI01015250v1     5305130  0 +   6154872 C

a score=15954.000000
s hg38.chr6_GL000254v2_alt    284836 17 +   4827813 aaatttttaaaattttc--
s panTro5.chr6              29260018 17 + 175400573 aaatttttgaaattttc--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29506087 17 + 173848474 aaatttttgaaattttc--
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74309802 17 + 122973662 aaatttttaaaattttc--
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29135006 17 - 170955103 aaatttttaaactttct--
i macFas5.chr4             I 635 I 2
s calJac3.chr4             171517201 19 - 171630274 aaattttaaaaatttcttc
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e colAng1.NW_012115566v1     2000964 1495 -   3067355 I
e manLeu1.NW_012104165v1     2135253 686 +   2316924 I
e chlSab2.chr17             28429013 1945 -  71996105 I
e cerAty1.NW_012001495v1     1992596 686 -   2157725 I
e macNem1.NW_012011356v1     2122710 2940 -   2996164 I
e rheMac8.chr4              29473212 694 + 172585720 I
e gorGor5.CYUI01015250v1     5305130  0 +   6154872 C

a score=1492822.000000
s hg38.chr6_GL000254v2_alt    284853 537 +   4827813 ttagcttattcattgacccattggttg--taggagcatg----ttg----atttccatgtgtttgtatagtttccaaggttcctcttg--------ttgatttctggttttattccattgtg--------------------------------atcagaaaagatacttgatataatttttacttttttgaatttgctgagacttcttttgtgacttaagatatggtctgttctggagaatgtgccatgtgcaagtgaaaagaatgtgtactctgtagcagctgggtgaaatgttctataaatgtc----aggcctacttggtctagtgtgtagcttaattccaatg-tttctttattgattttctccctggataa-----tctg----ttactgaaagtgaggt--gttgaagtccctactattattatattggagcctatctctcccttgagatttattaatgtttgttttacatatttggatgctctggtgttgggtgcacagatatttataatttttaatatcctcttgatgaattgaccccttcatcattatatagtgaccttttgtcactttttacattccttgacttgtagtctg
s panTro5.chr6              29260035 539 + 175400573 ttagcttattcattgacccattggttg--tagaagcatg----ttg----atttccatgtgtttgtatagtttccaaggttcctcttg--------ttgatttctggttttattccattgtg--------------------------------atcagaaaagatacttgatataatttttacttttttgaatttgctgagacttcttttgtgacttaagatatagtctgttctggagaatgcgccatgtgcaagtgaaaagaatgtgtactctgtagcagctgggtgaaatgttctataaatgtc----aggcctacttggtctagtgtgtagcttaattccaatg-tttttttattgattttctccctggataa-----tctg----ttactgaaagtgaggtcagttgaagtccctactattattatattggagcctatctctcccttgagatttattaatgtttgttttacatatttggatgctctggtgttgggtgcacagatattgataatttttaatatcctcttgatgaattgaccccttcatcattatatggtgaccttttgtcactttttacattccatgacttgtagtctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29506104 539 + 173848474 ttagcttattcattgacccattggttg--taggagcatg----ttg----atttccatgtgtttgtatagtttccaaggttcctcttg--------ttgatttctggttttattccattgtg--------------------------------atcagaaaagatacttgatataatttttacttttttgaatttgctgagacttcttttgtgacttaagatatagtctgttctggagaatgtgccatgtgcaagtgaaaagaatgtgtactctgtagcagctgggtgaaatgttctataaatgtc----aggcctacttggtctagtgtgtagcttaattccaatg-tttctttattgattttctccctggataa-----tctg----ttactgaaagtgaggtcagttgaagtccctactattattatattggagcctatctctcccttgagatttattaatgtttgttttacatatttggatgctctggtgttgggtgcacagatattgataatttttaatatcctcttgatgaattgaccccttcatcattatatggtgaccttttgtcactttttacattccatgacttgtagtctg
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74309819 530 + 122973662 ttagcttattcattgacccattggttgtttaggagcatg----ttgattaatttccatgtgtttctatagtttccaaggttcctcttg--------ttgatttctggttttattccattgtg--------------------------------atcagaaaagatacttgatataatttttactttttggaatttgctgagac-----ttgtgacttaagacatggtctattatggagaat--gccatgtgcaagtgaaaagaa--tgtactctgtagcagctgggtgaaatgttctataaatgtc----aggcctgcttggtctagtgtgtagcttaattccaatgttttttttattgattttctccctagataatcttgtctg----ttactgaaagtgaggt--gttgaagtccctac---tattatattggagcctatctctcccttgagatttattaatgtttgtct----tatttggatgctctggtgttcggtgcacagatatttataatttttaatatccttttgatgaattg-ccccttcatcattatatagtgaccttttgtcactttttacattctttgacttgtagtc--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29473906 536 + 172585720 ttagtttattcattgacccattggttgtttagtagcatg-tgttta----atttccacgtgtttgtatagtttccaaggttcctcttg-----ttattgatttctggtttcattccactgtg--------------------------------gtcagaaaagatactttatataatttttacttttttgaatttgctgaaacttcttttgtggcttaagatatggtctattctggagaatgtgccatgtgcaagtgaaaagaatgt----------gcagctgagtgaaatgttctgtaaatgtc----aggcctacttggtctactgcatagcttaattccaata-tttctttgttgattttctgtctggataa-----tctgtccattactgaaagagaggt--gttgaagtccctactattattatattggagcctatctctcccttgacatttat---tgttcgtcttacatatttggatgctctggtgttgggtgcacagatatttataatttttaatatcctcttgatgaattgacccctttatcattacatagtgaccttttgtcactttttatattccttgacttgtagtcta
i rheMac8.chr4             I 694 C 0
s macFas5.chr4              29135025 536 - 170955103 ttagtttattcattgacccattggttgtttagtagcatg-tgttta----atttccacgtgtttgtatagtttccaaggttcctcttg-----ttattgatttctggtttcattccactgtg--------------------------------gtcagaaaagatactttatataatttttacttttttgaatttgctgaaacttcttttgtggcttaagatatggtctattctggagaatgtgccatgtgcaagtgaaaagaatgt----------gcagctgagtgaaatgttctgtaaatgtc----aggcctacttggtctactgcatagcttaattccaata-tttctttgttgattttctgtctggataa-----tctgtccattactgaaagagaggt--gttgaagtccctactattattatattggagcctatctctcccttgacatttat---tgttcgtcttacatatttggatgctctggtgttgggtgcacagatatttataatttttaatatcctcttgatgaattgacccctttatcattacatagtgaccttttgtcactttttatattccttgacttgtagtcta
i macFas5.chr4             I 2 C 0
s cerAty1.NW_012001495v1     1993282 540 -   2157725 ttagtttattcattgacccattggttgtttagtagcatg-tgttta----atttccatgtgtttgtatagtttccaaggttcctcttg-----ttattgatttctggtttcattccactgtg--------------------------------gtcagaaaagatactttatataatttttacttttttgaatttgctgaaacttcttctgtggcttaagatatggtctattctggagaatgtgccatgtgcaagtgaaaagaatgt----------gcagctgggtgaaatgttctgtaaatgtcagttaggcctacttggtctagtgcatagcttaattccaatg-tttctttgttgattttctgtctggataa-----tctgtccattactgaaagagaggt--gttgaagtccctactattattatattggagcctatctctcccttgacatttat---tgtttgtcttacatatttggatgctctggtgttgtgtgcacagatatttataatttttaatatcctcttgatgaattgacccctttatcattacatagtgaccttttgtcactttttatattccttgacttgtagtcta
i cerAty1.NW_012001495v1   I 686 C 0
s manLeu1.NW_012104165v1     2135939 540 +   2316924 ttagtttattcattgacccattggttgtttagtagcatg-tgttta----atttccatgtgtttgtatagtttccaaggttcctcttg-----ttattgatttctggtttcattccactgtg--------------------------------gtcagaaaagatactttatataatttttacttttttgaatttgctgaaacttcttctgtggcttaagatatggtctattctggagaatgtgccatgtgcaagtgaaaagaatgt----------gcagctgggtgaaatgttctgtaaatgtcagttaggcctacttggtctagtgcatagcttaattccaatg-tttctttgttgattttctgtctggataa-----tctgtccattactgaaagagaggt--gttgaagtccctactattattatattggagcctatctctcccttgacatttat---tgtttgtcttacatatttggatgctctggtgttgtgtgcacagatatttataatttttaatatcctcttgatgaattgacccctttatcattacatagtgaccttttgtcactttttatattccttaacttgtagtcta
i manLeu1.NW_012104165v1   I 686 C 0
s calJac3.chr4             171517220 589 - 171630274 ttagtttattcattgacccagtggttgtttaggagcatgttgttta----atttccatgtgtttgtatagtttccaaggtttctcttattctcttattgatttatggttttattcc-ttgtagggtttgtcagaaaagatacttgatattccttgtcagaaaagatacttgatataatttttacttttttgaatttgttgagacttcttctgtggcttaaaatatggtctgttttggagaatgtgccctgtgcaagtgaaaagaatgtgtactctgtagtgattgggtgaaatg-tctataaatgtcagataggcctacttgttctagtgcagagcttaattccaatg-tttcgttgttgattttctgtctggataa-----tctgtcctttactgagagtgagtt--gttgaagtttctactattattatattgcagcctatctctcccttgagatttattaatttttgtcttatatgtttggatgcactggtgttgggtgcactgatatttatgatttttactatcctcttgatgaaatgtcccctgtatcattatatgataaccttttgtcactttttatattctttgacttgtagtcta
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e colAng1.NW_012115566v1     2000964 1495 -   3067355 I
e chlSab2.chr17             28429013 1945 -  71996105 I
e macNem1.NW_012011356v1     2122710 2940 -   2996164 I
e gorGor5.CYUI01015250v1     5305130   0 +   6154872 C

a score=869352.000000
s hg38.chr6_GL000254v2_alt    285390 251 +   4827813 ttttatctgatataagtatacctaatcctgttctctttgatttccacttgcatggaatatctttttccataaattcactttcaacttatgtatgtccctataggcaagatggg-ttcttgtagcaccacatagttgggtctcgtctctttacccatttaacttctatacatcttttaattggagaatttggtccatttatattcagtgttattattgataagtaaggacttatgactgccattttgttgctt
s panTro5.chr6              29260574 252 + 175400573 ttttatctgatataagtatacctaatcctgttgtctttgatttccacttgcatgaaatatctttttccataaattcactttcaacttacgtatgtccctataggcaaggtgggtttctcatagcaccacatagttgggtctcgtctctttacccatttaacttctatacatcttttaattggagaatttagtccatttatattcagtgttattattgataagtaaggacttatgactgccattttgttgctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29506643 252 + 173848474 ttttatctgatataagtatacctaatcctgttgtctttgatttccacttgcatgaaatatctttttccataaattcactttcaacttacgtatgtccctataggcaaggtgggtttctcatagcaccacatagttgggtctcgtctctttacccatttaacttctatacatcttttaattggagaatttagtccatttatattcagtgttattattgataagtaaggacttatgactgccattttgttgctt
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74310349 250 + 122973662 ttttatctgatataagtatacgtaatcctgttgtctttgatttccactttcatggaatatctttttccataaattcactttcagcttatgtatgtccctataggcaaggtgggtttctcatagcaccacatagttgggtctcatctc--tacccatttaattactatacatcttttaattggagaatttagtccatttatgttcagtgttattattgataagtaaggacttataactgccattttgttgctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29474442 235 + 172585720 ttttatctgatataaatatacctaatcccattctttttgatttccatttgcatggaatatctttttccataaattcactttcagcc--------------taggcaaggtgggtttcttgtagcaccacatagttggatctcgtctctttacccatttaactactctacatcttttaattggagaatttagtccatttatatttggtg---ttattgataagtaaggacttataactgccattttgttgctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29135561 235 - 170955103 ttttatctgatataaatatacctaatcccattctttttgatttccatttgcatggaatatctttttccataaattcactttcagcc--------------taggcaaggtgggtttcttgtagcaccacatagttggatctcgtctctttacccatttaactactctacatcttttaattggagaatttagtccatttatatttggtg---ttattgataagtaaggacttataactgccattttgttgctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2125650 235 -   2996164 ttttatctgatataaatatacctaatcccattctttttgatttccacttgcatggaatatctttttccataaattcactttcagcc--------------taggcaaggtgggtttcttgtagcaccacatagttggatctcgtctctttacccatttaactactctacatcttttaattggagaatttagtccatttatatttggtg---ttattgataagtaaggacttataactgccattttgttgctt
i macNem1.NW_012011356v1   I 2940 C 0
s cerAty1.NW_012001495v1     1993822 235 -   2157725 ttttatctgatataaatatacctaatcccattctttttgatttccacttgcatggaatatctttttccataaattcactttcagcc--------------taggcaaggtgggtttcttgtagcaccacatagttggatctcgtctctttacccatttaactactctacatcttttaattggagaatttagtccatttatatttggtg---ttattgataagtaaggacttataactgccattttgttgctt
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2136479 235 +   2316924 ttttatctgatataaatatacctaatcccattctttttgatttccacttgcatggaatatctttttccataaattcactttcagcc--------------taggcaaggtgggtttcttgtagcaccacatagttggatctcgtctctttacccatttaactactctacatcttttaattggagaatttagtccatttatatttggtg---ttattgataagtaaggacttataactgccattttgttgctt
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171517809 252 - 171630274 ttttatctggcatgagtatacctaatcctgttctttttgatttctgcttgcatggaatatctttttccataaattcactttcagcctacgtgtgtccttatagacaaggtgggttacttgtaacagcatagagttgggtcttgtcactttactcatttaactactctgtgtcttttaattggataatttagtccatttacatttagtgttattattgacaagtaaggacttacgattgttattttgttgctt
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e colAng1.NW_012115566v1     2000964 1495 -   3067355 I
e chlSab2.chr17             28429013 1945 -  71996105 I
e gorGor5.CYUI01015250v1     5305130   0 +   6154872 C

a score=216025.000000
s hg38.chr6_GL000254v2_alt    285641 59 +   4827813 gttttctggttgttttgtaacgtctttcttcctttattcttttgctactgtatttcttt
s panTro5.chr6              29260826 59 + 175400573 gttttctggttgttttgtaacgtctttcttcctttattcttttgttactgtatttcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29506895 59 + 173848474 gttttctggttgttttgtaacgtctttcttcctttattcttttgttactgtatttcttt
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74310599 51 + 122973662 gttttctg---gttttgtaacgtc-----tctttttttcttttcctactgtattccttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29474677 56 + 172585720 gttttctggttgttttgaaacgcttctcttcctttcttc---ttctactgtattctttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29135796 56 - 170955103 gttttctggttgttttgaaacgcttctcttcctttcttc---ttctactgtattctttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2125885 56 -   2996164 gttttctggttgttttgaaacgcttctcttcctttcttc---ttctactgtattctttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1994057 59 -   2157725 gttttctggttgttttgaaacgtcgctcttcctttcttctttttctactgtattctttt
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2136714 59 +   2316924 gttttctggttgttttgaaacgtcgctctttctttcttctttttctactgtattctttt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2002459 59 -   3067355 gttttctggttgttttgaaatgtctctcttcctttcttcttttcctactgtattctttt
i colAng1.NW_012115566v1   I 1495 C 0
s calJac3.chr4             171518061 56 - 171630274 gttttctggttgttttgtaacttctctcttcctttcttt---tcctactgtattctttt
i calJac3.chr4             C 0 I 6814
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e chlSab2.chr17             28429013 1945 -  71996105 I
e gorGor5.CYUI01015250v1     5305130  0 +   6154872 C

a score=2920039.000000
s hg38.chr6_GL000254v2_alt    285700 789 +   4827813 gtggttaagttattttctctggtagaatgctttaattcactgccttctatttttagtgtattaattacagatttttgcattggggttaccatgaggcttacaaaacatatcttatagctactttgt-----tttatta-----ttacttattattctgatacaggg--tctctgtcacccaggctggagtgcagtggtgagatcttggcttactgcagcctctaccttattgaactcaggcaatcctcctacctcagtctcctgagtagctgataccatagacacatgccaccatagccagctaagttttgtattttttgtagagatgaggttttgccatgttgcccagagtggttttgaactcctgagctcaagtgattagctagccttggcctcccaaagtgctgggattacaggcatgagccatggcgcgcagctgatattttacaaagatgacaacttaactttgatcacaaagaaaagactagaaacaaaca---aaaaaacttaaataacccccacaaaaccctgccctttaactctatacccctacatcttgactttttgttgtctcggtttacatatttttatattgtctatctcttagcaggtcactgtagcaattattgtttttgataggtttgtcttttagatttcatactacagttataaatggattgcacaccacaattagagtattagagtatcctgggtatgtcttgtacttaatgttaccagtggtt-tttttcc-tcaaatattttctttatgcatgttagcatctttttctcttagattgaaggactt
s panTro5.chr6              29260885 779 + 175400573 gtg-----gttattttctctggtagaatgctttaattcactgccttctatttttagtgtatttattacagatttttgcattggggttaccatgaggcttacaaaacatatcttatagctactttgt-----tttatta-----ttacttattattctgagacaggg--tctctgtcacccaggctggagtgcagtggtgagatcttggcttactgcagcctctaccttattgaactcaggcaatcctcctacctcagcctcctgagtagctgataccatagacacatgccaccatagccagctaagttttgtgttttttgtagagatgaggttttgccatgttgcccagactggttttgaactcctgagctcaagtgattagctagccttggcctcccaaagtgctgggattacaggcatgagccatggcgcccagctgatattttacgaagatgac-----aactttgatcacaaagaaaagactagaaacaaac----aaaaaacttaaaaaaaacccacacaaccctgccctttaactctatacccctacatcttgactttttgttgtttcagtttacatatttttatattgtctatctcttagcaggtcactgtagcaattattgtttttgataggtttgtcttttagatttcatactacagttataaatggattgcacatcacaattagagtattagagtatcctgggtatgtgttgtacttaatgttaccagtggtt-tttttccttcaaatattttctttatgcatgttagcatctttttctcttagattgaaggtctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29506954 782 + 173848474 gtttgtg-gttattttctctggtagaatgctttaattcactgccttctatttttagtgtatttattacagatttttgcattggggttaccatgaggcttacaaaacatatcttatagctactttgt-----tttatta-----ttacttattattctgagacaggg--tctctgtcacccaggctggagtgcagtggtgagatcttggcttactgcagcctctaccttattgaactcaggcagtcctcctacctcagcctcctgagtagctgataccatagacacatgccaccatagccagctaagttttgtgttttttgtagagatgaggttttgccatgttgcccagactggttttgaactcctgagctcaagtgattagctagccttggcctcccaaagtgctgggattacaggcatgagccatggcgcccagctgatattttacgaagatgac-----aactttgatcacaaagaaaagactagaaacaaac-----aaaaacttaaaaaaaccccacacaaccctgccctttaactctatacccctacatcttgactttttgttgtttcagtttacatatttttatattgtctatctcttagcaggtcactgtagcaattattgtttttgataggtttgtcttttagatttcatactacagttataaatggattgcacatcacaattagagtattagagtatcctgggtatgtcttgtacttaatgttaccagtggtt-tttttccttcaaatattttctttatgcatgttagcatctttttctcttagattgaaggtctt
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74310650 758 + 122973662 g-------gttattttctttggtaaaatgctttaattcattgccttttatttttagtgt----attatagatttctgcattggggttaccatgaggcttacaaaacacatcttatagctattttgt-----tttatta-----tta----------tgagacagggtctctctgtcacccaggctggagtgcagtggcgagatctcggcttactgcagcctctaccttactgaact----caatccttctacctcagcctcctgagtagctgataccata-acacatgccatcatag-cagctaagttttgtattttttatagagatgaggttttgccgtgttgcccagactggttttgaactcttgagctcaagtgattagctagccttggcctcccaaagtgctgggattacaggcgtgagtcatggcgcccagct--cattttacaaagatgtcaacttaattttgatcacaaagaaaagactagaaacaaac----aaaaaacttaaaaaccccccacaaaaccctgccctttaactctatacccctacacgttgactttttgttgtctcagtttacatatttttacattgtctatctc--aacaggtcactgtagcaattattgtttttgataggcttgtc--ttagatttcatattacagttataaatggattgcacaccacaattagagtattagagtatcctgggtatgtcttgtacttaattttaccagtggtt-tttttccttcatgtattttctttatgcatgttagtgtctttttcacttagactgaaggactt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29474733 798 + 172585720 gtggttaagtgattttctctggtagaatgcttcaattcattgccttttatttttactgtatttattatagatttttgcattggggttaccatgaggcttacaaaacacatcttatagctattttat-----tttattatttatttacttattaatctgagacaggg--tctctgccacccaggctggagtgcagtggcgagatctcagcttactgcagcctctacctta-tgaactcaagcagtcctcctacctcagcctcctgagtagctgataccacagacacgtgccaccatagccagctaagttttgtattttttgtagagatggggttttgccatgttgcccagactggttttgaacttctgagctcaagtgattagctagtcttggcctcccaaagtgctaggattacaggcatgagccatggcgcccagctgatattttacaaagatgacaacttatctttgatcacaaagaaaagactagaaacaaacaaacaaaaatctttaaaaccccctacaaatccctgccctttaactctatgcccccacactttgactttttgttgtctcagcttacatatttttatattgtctatctcttagcaggtcactgtagctattattgtttttgataggtttatcttttagatttcatactagagttataaatggattgcacaccacaattagagtattagaatattctgggtatgtcttgtacttaattttaccagtgtttatttttccttcaaatgttttctttacgcatattagcatttttttctcttagattgaaggactt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29135852 798 - 170955103 atggttaagtgattttctctggtagaatgcttcaattcattgccttttatttttactgtatttattatagatttttgcattggggttaccatgaggcttacaaaacacatcttatagctattttat-----tttattatttatttacttattaatctgagacaggg--tctctgccacccaggctggagtgcagtggcgagatctcagcttactgcagcctctacctta-tgaactcaagcagtcctcctacctcagcctcctgagtagctgataccacagacacgtgccaccatagccagctaagttttgtattttttgtagagatggggttttgccatgttgcccagactggttttgaacttctgagctcaagtgattagctagtcttggcctcccaaagtgctaggattacaggcatgagccatggcgcccagctgatattttacaaagatgacaacttatctttgatcacaaagaaaagactagaaacaaacaaacaaaaatctttaaaaccccctacaaatccctgccctttaactctatgcccccacactttgactttttgttgtctcagcttacatatttttatattgtctatctcttagcaggtcactgtagctattattgtttttgataggtttatcttttagatttcatactagagttataaatggattgcacaccacaattagagtattagaatattctgggtatgtcttgtacttaattttaccagtgtttatttttccttcaaatgttttctttacgcatattagcatttttttctcttagattgaaggactt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2125941 798 -   2996164 atggttaagtgattttctctggtagaatgcttcaattcattgccttttatttttactgtatttattatagatttttgcactggggttaccatgaggcttacaaaacacatcttatagctattttat-----tttattatttatttacttattaatctgagacaggg--tctctgccacccaggctggagtgcagtggcgagatctcagcttactgcagcctctacctta-tgaattcaagcagtcctcctacctcagcctcctgagtagctgataccacagacacgtgccaccatagccagctaagttttgtattttttgtagagatggggttttgccatgttgcccagactggttttgaacttctgagctcaagtgattagctagtcttggcctcccaaagtgctaggattacaggcatgagccatggcgcccagctgatattttacaaagatgacaacttatctttgatcacaaagaaaagactagaaacaaacaaacaaaaatctttaaaaccccctacaaatccctgccctttaactctatgcccccacactttgactttttgttgtctcagcttacatatttttatattgtctatctcttagcaggtcactgtagctattattgtttttgataggtttatcttttagatttcatactagagttataaatggattgcacaccacaattagagtattagaatattctgggtatgtcttgtacttaattttaccagtgtttatttttccttcaaatgttttctttacgcatattagcatttttttctcttagattgaaggactt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1994116 798 -   2157725 gtggttaagtgattttctctggtagaatgcttcaattcattgccttttatttttagtgtatttattatagatttttgcattggggttaccatgaggcttacaaaacacatcttatagctattttat-----tttattatttatttatttattattctgagacaggg--tctctgccacccaggctagagtgcagtggtgagatctcagcttactgcagcctctacctta-tgaactcaagcagtcctcctacctcagcctcctgagtagctgataccacagacacgtgccaccatagccagctaagttttgtattttttgtagagatggggttttgccatgttgcccagactggttttgaactcctgagctcaagtgattagctagccttggcctcccgaagtgctaggattacaggcatgagccatggcgcccagctgatattttacaaagatgacaacttatctttgatcacaaagaaaagactagaaacaaacaaacaaaaatctttaaaaccccctacaaatccctgccctttaactctatgcccccacactttgactttttgttgtctcagcttacatatttttatattgtctatctcttagcaggtcactgtagctactattgtttttgataggtttgtcttttagatttcatactagagttataaatggattgcaccccacaattagagtattagaatattctgggtatgtcttgtacttaattttaccagtgtttatttttccttcaaatgttttctttacacatattagcatttttttctcttagattgaaggactt
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2136773 798 +   2316924 gtggttaagtgattttctctggtagaatgcttcaattcattgccttttatttttagtgtatttattatagatttttgcattggggttaccatgaggcttacaaaacacatcttatagctattttat-----tttattatttatttatttattattctgagacaggg--tctctgccaccgaggctagagtgcagtggtgagatctcagcttactgcagcctctacctta-tgaactcaagcagtcctcctacctcagcctcctgagtagctgataccacagacacgtgccaccatagccagctaagttttgtattttttgtagagatggggttttgccatgttgcccagactggttttgaactcctgagctcaagtgattagctagccttggcctcccgaagtgctaggattacaggcgtgagccatggcgcccagctgatattttacaaagatgacaacttatctttgatcacaaagaaaagactagaaacaaacaaacaaaaatctttaaaaccccccacaaatccctgccctttaactctatgcccccacactttgactttttgttgtctcagcttacatatttttatattgtctatctcttagcaggtcactgtagctactattgtttttgataggtttgtcttttagatttcatactagagttataaatggattgcaccccacaattagagtattagaatattctgggtatgtcttgtacttaattttaccagtgtttatttttccttcaaatgttttctttacacatattagcatttttttctcttagattgaaggactt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2002518 787 -   3067355 gtggttaagtgattttctctggtagaatgcttcaattcattgccttttatttttagtgtatttattatagatttttgcattggggttaccatgaggcttacaaaatacatcttatagctattttattttactttattatttatttacttattattctgagacaggg--tctctgtcactcaggctggagtgcagtggcgagatctcagcttactgcagcctctacctta-tgaactcaggcagtcctcctacctcagcctcctgagtagctgataccacagacacgtgccaccatagccagctaagttttgtattttttgtagagatggggttttgccatgttgcccagactggttttgaactcctgagctcaagtgattagctagccttggcctccccaagtgctgggatt-----------ccatggcgcctagctgatattttacaaagatgataacttatctttgatcacaaagaaaagactag----aaacaaacaaaaatctttaaaaccccc-acaaaaccctgccctttaattctatgcccccacactttgactttttgttgtctcagcttacatatttttatattgtctatctcttagcagatcactgtagctattattgtttttgataggtttgtcttttagatttcatactagagttataaatggattgcacaccacaattagagtattagaatattctgggtatgtcttgtacttaattttaccagtgttttttttgccttcaaatgttttctttacgcatattagcatttttttctcttagattgaaggactt
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171518117 6814 - 171630274 I
e chlSab2.chr17             28429013 1945 -  71996105 I
e gorGor5.CYUI01015250v1     5305130   0 +   6154872 C

a score=1649082.000000
s hg38.chr6_GL000254v2_alt    286489 353 +   4827813 catttgccatttattttaagataggcctggtggtagtgaattctcagcttttgtttgtcagggaaagattttatgtcttcttcatgtttgaagaatagcttttctggtacattaatcttggatggcggttttatttctt-------ttagcactttgaaaatgccatcccacatctacctggcc-tgtatagtttccattgaggagtctgttgccagaataattggagctctttgtatgttatttacttcttttctcttgctgcttttattttttattttattttat--tttttttgagactgagttttactcttgtcacccaggctggagtgcaatggtgctatctcggctcactgcaacct
s panTro5.chr6              29261664 353 + 175400573 catttaccatttattttaagatgggccttgtggtagtgaattctcagcttttgtttgtcagggaaagattttatctcttcttcatgtttgaagaatagcttttctggtacattaatcttggatggcagttttatttctt-------ttagcactttgaaaatgtcatcccacatctacctggcc-tgtatagtttccattgaggagtctgttgccagaataattggagctctttgtatgttatttacttcttttctcttgctgcttttattttttattttattttat--tttttttgagactgagttttactcttgtcacccaggctggagtgcaatggtgctatctcggctcactgcaacct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29507736 352 + 173848474 catttaccatttattttaagatgggccttgtggtagtgaattctcagcttttgtttgtcagggaaagattttatctcttcttcatgtttgaagaatagcttttctggtacattaatcttggatggcagttttatttctt-------ttagcactttgaaaatgtcatcccacatctacctggcc-tgtatagtttccattgaggagtctgttgccagaataattggagctctttgtatgttatttacttcttttctcttgctgcttttattttttattttatttta---tttttttgagactgagttttactcttgtcacccaggctggagtgcaatggtgctatctcggctcactgcaacct
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74311408 351 + 122973662 catttgctgtttattttaagatgggcctggtggtagtgaattctcagcttttatttgtcagggaaagactttatctctccttcatatttgaagaataacttttctggtacattaatcttggatggcagttttatttctt-------ttagcactttgaaaatgtcatcccacatctacctggccttgtatagtttccgttgaggagtctgttgccagaataattggagctctttgtatgttatttacttcttttctcttgctgcttttattttttgttttatttta---tttttttgagac--agttttactcttgtcacccaggctggagtgcaatggtgctatctcggctcactgcaacct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29475531 354 + 172585720 catttgccatttattttaagatgggcttggtggtagtgaattctcagcttttgtttgtcagggaaatgctttatgtctccttcatatttgaagaataacttttctggtacattattcttgaatggcagttttctttcttttttctattagcactttgaaaatgtcatcccacatctacctggcc-tgtatagtttacattgaggagtctgttgccagaataattggagctctttgtatgttatttacttcttttctcttgctgcttttattttttatttta--------tttttttgagactgactttcactcttgttgcccaggctggagtgcagtggtgctatctcagctcactgcaacct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29136650 354 - 170955103 catttgccatttattttaagatgggcttggtggtagtgaattctcagcttttgtttgtcagggaaatgctttatgtctccttcatatttgaagaataacttttctggtacattattcttgaatggcagttttctttcttttttctattagcactttgaaaatgtcatcccacatctacctggcc-tgtatagtttacattgaggagtctgttgccagaataattggagctctttgtatgttatttacttcttttctcttgctgcttttattttttatttta--------tttttttgagactgactttcactcttgttgcccaggctggagtgcagtggtgctatctcagctcactgcaacct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2126739 354 -   2996164 catttgccatttattttaagatgggcttggtggtagtgaattctcagcttttgtttgtcagggaaatgctttatgtctccttcatatttgaagaataacttttctggtacattattcttgaatggcagttttctttcttttttctattagcactttgaaaatgtcatcccacatctacctggcc-tgtatagtttacattgaggagtctgttgccagaataattggtgctctttgtatgttatttacttcttttctcttgctgcttttattttttatttta--------tttttttgagactgactttcactcttgttgcccaggctggagtgcagtggtgctatctcagctcactgcaacct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1994914 354 -   2157725 catttgccatttattttaagatgggcttggtggtagtgaattctcagcttttgtttgtcagggaaatgctttatgtctccttcatatctgaagaataacttttctggtacattattcctgaatggcagttttctttcttttttctattagcactttgaaaatgtcatcccacatctacctggcc-tgtatagtttacattgaggagtctgttgccagaataattggagctctttgtatgttatttacttcttttctcttgctgcttttattttttatttta--------tttttttgagactgactttcactcttgttgcccaggctggagtgcagtggtgctatctcagctcactgcaacct
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28430958 360 -  71996105 catttgccatttattttaagatgggcttggtggtagtgaattctcaacttttgtttgtcagggaaatgctttatttctccttcacatttgaagaataacttttctggtacattattcttgaatggcagttttctttcttttttctattagcactttgaaaatgtcatcccacatctacctggca-tgtatagtttacattgaggagtctgttgccagaataattagacctctttgtatgttatttacttcttttcttttgctgcttttattttttattttatttta--ttttttttgagactgagtttcactcttgttgctcaggctggagtgcagtggtgctatctcagctcactgcaacct
i chlSab2.chr17            I 1945 C 0
s manLeu1.NW_012104165v1     2137571 354 +   2316924 catttgccatttattttaaggtgggcttggtggtagtgaattctcagcttttgtttgtcagggaaatgctttatgtctccttcatatttgaggaataacttttctggtacattattcctgaatggcagttttctttcttttttctattagcactttgaaaatgtcatcccacatctacctggcc-tgtatagtttacattgaggagtctgttgccagaataattggagctctttgtatgttatttacttcttttctcttgctgcttttattttttatttta--------tttttttgagactgactttcactcttgttgcccaggctggagtgcagtggtgctatctcagctcactgcaacct
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2003305 362 -   3067355 catttgccatttattttaagatgggcttggtggtagtgaattctcagcttttgtttgtcagggaaatgctttatttctccttcatatttgaagaataacttttctggtacattattcttgaatggcagttttctttcttttttctattagcactttgaaaatgtcatcccacatctacctggcc-tgtatagtttacattgaggagtctgcagccagaataattggagctctttgtatgttatttacttcttttctcttgctgcttttattttttattttattttattttttttttgagactgactttcactcttgttgcccaggctggagtgtagtggtgctatctcagctcactgcaacct
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171518117 6814 - 171630274 I
e gorGor5.CYUI01015250v1     5305130   0 +   6154872 C

a score=5370666.000000
s hg38.chr6_GL000254v2_alt    286842 966 +   4827813 ctgcc-tcccgggttcaagcgattctcctgcctcagcctcctgagtagctaggattacaggcacccactaccatgccccactaattactgtatttttagtggagacagggtttcaccatgttggccaggctgatctcgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattacaggcatgagccatggcgcccagccaacttttgtaatc--ctctttgtccttgacctttgagaatttgattattgtatgtcttggggtggtcttatttgggttgaatctgtttcatgttctctaatc---ttgtacctagatacttatatatttcttaagtttggaaagttttgagtta---tttctttggataagctttctaagttttgctctttctgaattccctcttgagcaccaatcattcttagatttgtccttttgaggtacttttctatattatttaggtgatcttcattcctttgtattcgtttcccttttttctcctctaactgtattttcaaatagcctgtc--tgagtttactaattccttccactgtctgatccattctgctgtcgagagtctc-taataaatttttcagtttgacaagtatatttctcagttccaagatttttgtttgattttaaaaaattattttaatctctttgttaaatttctctgataaatttttgaattgcttttgtgtgttatccttgagttcactgagtttctttaaaactgctattttgaattcttggtgagagagctcacataccactgtcttgcctagggtaagtcattggttccttgctttgtctgtttggggaagtcatgtatattagtctgttctctcactgctatacagaaacacatgagactgagtaatttataaagaaaagaggtttacttagctcatggttctgcaggctgtacagaaagcatgacagcatctac---ttttttttcg-c
s panTro5.chr6              29262017 969 + 175400573 ctgcc-tcccaggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcacccactaccatgccccactaattactgtatttttagtggagacagggtttcaccatgttggccaggctgatcttgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattacaggcatgagccgtggcgcctagccaacttttgtaatc--ctctttgtccttgacctttgagaatttgattattgtatgtcttggggtggtcttatttgggttgaatctgtttcatgttctctgatc---ttgtacctagatacttatatatttcttaagtttggaaagttttgagtta---tttctttggataagttttctaacttttgctcttgctgaattccctcttgagcaccaatcatttttagatttgtccttttgaggtacttttctatatcatttaggtgattttcattcctttgtattcttttcccttttttctcctctaactgtattttcaaatagcctgtctttgagtttactaattccttccactgtctgatccgttctgctgtcgggagtctc-taataaatttttcagtttgacaagtatatttctcagttccaagatttttgtttgattttaaaaaattattttaatctctttgttaaatttctctgataaatttttgaattgcttttgtgtgttatccttgagttcactgagtttctttaaaactcctattttgaattcttggtgagagagctcacatatcactgtcttgcctagagtaagtcactggttccttgctttgtatgtttggggaagtcatgtatattagtctgttctcacactgctatacagaaacccatgagactgagtcatttataaagaaaagaggtttacttagctcttggttctgcaggctgtacagaaagcatgacagcatctac--tttttttttcc-c
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29508088 967 + 173848474 ctgcc-tcccaggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcacccactaccatgccccactaattactgtatttttagtggagacagggtttcaccatgttggccaggctgatcttgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattacaggcatgagccgtggcgcctagccaacttttgtaatc--ctctttgtccttgacctttgagaatttgattattgtatgtcttggggtggtcttatttgggttgaatctgtttcatgttctctgatc---ttgtacctagatacttatatgtttcttaagtttggaaagttttgagtta---tttctttggataagttttctaacttttgctcttgctgaattccctcttgagcaccaatcatttttagatttgtccttttgaggtacttttctatatcatttaggtgattttcattcctttgtattcttttcccttttttctcctctaactgtattttcaaatagcctgtctttgagtttactaattccttccactgtctgatccgttctgctgtcgggagtctc-taataaatttttcagtttgacaagtatatttctcagttccaagatttttgtttgattttaaaaaattattttaatctctttgttaaatttctctgataaatttttgaattgcttttgtgtgttatccttgagttcactgagtttctttaaaactcctattttgaattcttggtgagagagctcacatatcactgtcttgcctagagtaagtcactggttccttgctttgtatgtttggggaagtcatgtatattagtctgttctcacactgctatacagaaacccatgacactgagtcatttataaagaaaagaggtttacttagctcttggttctgcaggctgtacagaaagcatgacagcatctac----tttttttcc-c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5305130 962 +   6154872 ctgccttcccgggttcaagcgattctcctgcctcagcctcctgagcagctgggattacaggcacccactaccatgccccactaattactgtatttttagtggagacagggtttcaccatgttggccaggctgatcttgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattacaggcatgagccgtggcgcctagcGAActtttgtaatc--ctctttgtccttgacctttgagaatttgattattgtatgtcttggggtggtcttatttgggttgaatctgtttcatgttctctgatc---ttgtacctagatacttatata----ttaagtttggaaagttttgagtta---tttctttggataagctttctaacttttgctcttgctgaattccctcttgagcaccaatcattcttagacttgtccttttgaggtacttttctatattatttaggtgatcttcattgctttgtattcttttcccttttttctcctctaactgtattttcaaatagcctgtctttgagtttactaattccttccactgtctgatccgttctgctgtcgggagtctc-taataaatttttcagtttgacaagtgtatttctcagttccaagatttttgtttgatttttaaaaattattttaatctc-ttgttaaatt--tctgataaatttttgaattgcttttgtgtgttatccttgagttcactgagtttctttaaaactcctattttgaattcttggtgagagagctcacataccactgtcttgcctagagtaagtcactggttccttgctttgtatgtttggggaagtcatgtatattagtctattctcacactgctatacagaaacacatgagactgagtaatttataaagaaaagaggtttacttagctcatggttcggcaggctgtacagaaagcatgacagcatctac---ttttttttcc-c
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74311759 961 + 122973662 ccacc-tcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcacccactaccatgacccactaattattgtatttttagtggagacagggtttcaccatattggccaggctgatctcaaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattacaggcatgagccatggtgcccagacaacttttgtaatc--ctttttgtccttgacctttgagaattcgattattgtatgtcttcgggtggtcttatttgggttgaatctgtttcatgttctctgatc---ttgtacctagatacttacatatttcttaagtttggaaagttttgagtta---tttctttggataagctttctaacttttgctgttgccgaattcccttttgagcaccagtcattcttagatttgtccttttgaggtacttttctatgttatttaggtgatcgtcattcctttgtattcttttcccttttttttcctctaactgtattttcaaatagcctgtctttgagtttactaattccttcc---gtctgatccattttgctgttgagagtctc-taataaatttttcagtttgacaagtatatttctcagttccaagatttttgtttgattttaaaaaattgttttaatctc----ttaaatttctatgataaatttttgaattgcttttgtgtatta-ccttgagttcaatgagtttctttaaaactgctgttttgaattcttggtgagagagctcacataccactgtcttg-ctagggcaagtcactggttccttgctttgtctgtttgtggaagtcatgtatattagtctgttctcacactgctatacggaaacacatgagactgggtaattcgtaaagaaaagagg-ttgcttagctcatggttctgcaggctgtacagaaagcatgacagcatctgctttcttttttttt-c
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29475885 965 + 172585720 ctgcc-tcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcaccccctaccatgccctactacttattgtatttttattggagacagggtttcaccatgttggccaggctgatctcaaactcctgacctcaggtaatccacctgccttggcctcccaaagtgctgggattacaggcatgagccatggcacccagccaacttttgtaatcctctctttgtccttgacctttgagaatttggttattgtatgtcttggggtggttttatttgggttgaatctgtttcatgttctctgatcttcttgtacctagatacctatatatttcttaagtttggaaagttttgagttactatttctttggataagctttctaacttttgctctggctg-attccctcttgagaaccgatcattcttagatttgtctttttgaggtacttttctatattatttaggttatcttcattcctttgtattcttttcccctttttctcctctgactgtattttcaaatagcctgtctttgagtttactaattctttccactgtttgatccattctgctgttgagagtctcttaataaatttttcagtttgacaagtatatttctcagttccaagatttctgtttgatttttaaaaattattttaatctctttgttcaatttctctgataaatttttaaattgcttttgtgtgttatcctggagttcactgagtttctttaaaactgctattttgaattcttggtgacagagctcacatatcactgtcttg-ttagggtaagtcactggttccttgctttgtctgtttggtgaagtcatgtatattagtccattcta--------atacataaatacatgagactgggtaatttataaagaaaagaggtttaattagctcatggttctgcaggctgtacagaaagcatgacagcatctgc-----tttttttt-c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29137004 965 - 170955103 ctgcc-tcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcaccccctaccatgccctactacttattgtatttttattggagacagggtttcaccatgttggccaggctgatctcaaactcctgacctcaggtaatccacctgccttggcctcccaacgtgctgggattacaggcatgagccatggcacccagccaacttttgtaatcctctctttgtccttgacctttgagaatttggttattgtatgtctcggggtggttttatttgggttgaatctgtttcatgttctctgatcttcttgtacctagatacctatatatttcttaagtttggaaagttttgagttactatttctttggataagctttctaacttttgctctggctg-attccctcttgagaaccgatcattcttagatttgtctttttgaggtacttttctatattatttaggttatcttcattcctttgtattcttttcccctttttctcctctgactgtattttcaaatagcctgtctttgagtttactaattctttccactgtttgatccattctgctgttgagagtctcttaataaatttttcagtttgacaagtgtatttctcagttccaagatttctgtttgatttttaaaaattattttgatctctttgttcaatttctctgataaatttttaaattgcttttgtgtgttatcctggagttcactgagtttctttaaaactgctattttgaattcttggtgagagagctcacatatcactgtcttg-ttagggtaagtcactggttccttgctttgtctgtttggtgaagtcatgtatattagtccattcta--------atacataaatacatgagactgggtaatttataaagaaaagaggtttaattagctcatggttctgcaggctgtacagaaagcatgacagcatctgc-----tttttttt-c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2127093 965 -   2996164 ctgcc-tcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcaccccctaccatgccctactacttattgtatttttattggagacagggtttcaccatgttggccaggctgatctcaaactcctgacctcaggtaatccacctgccttggcctcccaaagtgctgggattacaggcatgagccatggcacccagccaacttttgtaatcctctctttgtccttgacctttgagaatttgattattgtatgtcttggggtggttttatttgggttgaatctgtttcatgttctctgatcttcttgtacctagatacctatatatttcttaagtttggaaagttttgagttactatttctttggataagctttctaacttttgctctggctgaattccctcttgagaaccgatcattcttagatttgtctttttgaggtacttttctatattatttaggttatcttcattcctttgtattcttttcccctttttctcctctgactgtattttcaaatagcctgtctttgagtttactaattctttccactgtttgatccattctgctgttgagagtctcttaataaatttttcagtttgacaagtatatttctcagttccaagatttctgtttgatttttaaaaattattttaatctctttgttcaatttctctgataaatttttaaattgcttttgtgtgttatcctggagttcactgagtttctttaaaactgctattttgaattcttggtgagagagctcacatatcactgtcttg-ttagggtaagtaactggttccttgctttgtctgtttggtgaagtcatgtatattagtccattcta--------atacataaatacatgagactgggtaatttataaagaaaagaggtttaattagctcatggttctgcaggctgtacagaaagcatgacagcatctgc------ttttttt-c
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1995268 965 -   2157725 ctgcc-tcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcaccccctaccatgccctactacttattgtatttttattggagacagggtttcaccatgttggccaggctgatctcaaactcctgacctcaggtaatccacctgccttggcctcccaaagtgctgggattacaggcatgagccatggcacccagccaacttttgtaatcctctctttgtccttgacctttgagaatttgattattgtatgtcttggggtggtcttatttgggttgaatctgtttcatgttctctgatcttcttgtacctagatacctatatatttcttaagtttggaaagttttgagttactatttctttggataagctttctaacttttgctctggctgaattccctcttgagaaccgatcattcttagatttgtctttttgaggtacttttctatattatttaggtgatcttcattcctttgtattcttttcccttttttctcctctgactgtattttcaaatagcctgtctttgagtttactaattctttccactgtttgatccattctgctcttgagagtctc-taataaatttttcagtttgacaagtatatttctcagttccaagatttctgtttgattttaaaaaattattttaatctctttgttcaatttctctgataaatttttgaattgcttttgtgtgttatcctgcagttcactgagtttctttaaaactgctattttgaattcttggtgagagagctcacatatcactgtcttg-ttagggtaagtcactggttccttgctttgtctgtttggtgaagtcatgtatattagtccgttcta--------atacataaatacatgagactgggtaatttataaaggaaagaggtttaattagctcatggttctgcaggctgtacagaaagcatgacagcatctgc-----tttttttt-c
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28431318 966 -  71996105 ctgcc-tcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcaccccctaccatgccccactacttattgtatttttattggagacaggctttcaccatgttggccaggctgatctcgaactcctgacctcaggtaatccacctgcctcggcctcccaaaatgctgggattacaggcatgagccatggcacctagccaacttttgtaatcttctctttgtcgttgacctttgagaatttgattattgtatgtcttggggtggtattatttgggttgaatctgtttcatgttctctgatcttcttgtacctagatacccatatatttcttaagtttggaaagttttgagttattatttctttggataagctttctaacttttgctctggctgaattccctcttgagaatggataattcttagatttgtctttttgaggtacttttctatattatttaggtgatcttcattcctttgtattcttttcccttttttctcctctgactgtattttcaaatagcctgtctttgagtttactaattctttccactgtttgatccattctgctgttgagagtctc-taataaatttttcagtttggcaagtatatttctcagttccaagatttctgtttgattttaaaaaattattttaatctctttgttcaatttctctgataaatttttgaattgcttttgtgtgttatcctggagttcactgagtttctttaaaactgctattttgaattcttggtgagagagctcacatatcactgtcttg-ttagggtaagtcactggttccttgctttgtctgtttggggaagtcatgtatattagtccgtttta--------atacataaatacatgagactgggtaatttataaagaaaagaggtttaattagctcctggttctgcaggctgtacagaaagcatgacagcatctgc-----ttttttttcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2137925 965 +   2316924 ctgcc-tcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcaccccctaccatgccctactacttattgtatttttattggagacagggtttcaccatgttggccaggctgatctcaaactcctgacctcaggtaatccacctgccttggcctcccaaagtgctgggattacaggcatgagccatggcacccagccaacttttgtaatcctctctttgtccttgacctttgagaatttgattattgtatgtcttggggtggtcttatttgggttgaatctgtttcatgttctctgatcttattgtacctagatacctatatatttcttaagtttggaaagttttgagttactatttttttggataagctttctaacttttgctctggctgaattccctcttgagaaccaatcattcttagatttgtctttttgaggtacttttctatattatttaggtgatcttcattcctttgtattcttttcccttttttctcctctgactgtattttcaaatagcctgtctttgagtttactaattctttccactgtttgatccattctgctgttgagagtctc-taataaatttttcagtttgacaagtatatttctcagttccaagatttctgtttgattttaaaaaattattttaatctctttgttcaatttctctgataaatttttgaattgcttttgtgtgttatcctgcagttcactgagtttctttaaaactgctattttgaattcttggtgagagagctcacatatcattgtcttg-ttagggtaagtcactggttccttgctttgtctgtttggtgaagtcatgtatattagtccgttcta--------atacataaatacatgagactgggtaatttataaaggaaagaggtttaattagctcatggttctgcaggctgtacagaaagcatgacagcatctgc-----tttttttt-c
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2003667 965 -   3067355 ctgcc-tcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcaccccctaccatgccccactacttattgtatttttattggagacagggtttcaccatgttggccaggctgatctcgaactcctgacctcaggtaatccacctgcctcggcctcccaaagtgctgggattacaggcatgagccatggcacccagccaacttttgcaatcctctctttgtctttgacctttgagaatttgattattgtatgtcttggggtggtcttatttgggttgaatctatttcatgttctctgatcttcttgtacctagatacctatatatttcttaagtttggaaagttttgagttactgtttctttggataagctttctaacttttgctatggctgaattccctcttgagaaccaataattcttagatttgtctttttgaggtacttttctatattatttaggtgatcttcattcctttgtattcttttccctttttcctcctctgactgtattttcaaatagcctgtctttgagtttactaattctttccactgtttgatccattctgctattgagagtctc-taataaatttttcagtttgacaggtatatttctcagttccaagatttctgtttgattttaaaaaattattttaatctctttgttgaatttctctgataaatttttgaattgcttttgtgtgttatcctggagttcactgagtttctttaaaactgctattttgaattcttggtgagagagctcacatatcgctgtcttg-ttagggtaagtcactggttccttgctttgcctgtttggggaagtcatgtatattagtctgttcta--------acacataaatacatgagactgggtaatttataaagaaaagaggtttaattagctcatggttttgcaggctgtacagaaagcataacagcatctgc-----tttttttt-c
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171518117 6814 - 171630274 I

a score=5618710.000000
s hg38.chr6_GL000254v2_alt    287808 875 +   4827813 cctcttggtcttgccttctttctgacatcacatggagtctgcagtccaggttttccttggccctagtaaatgactggagcactgccggacccaaatgtagaaggtcttac-gggggatatcccaatagggtgggaagtctggctagaatttcgtgctcagggaacctgtggaacatacctcctatggtgtgtcgctgctgaccagcttc-gctgatttggcgtctcctttggctgagttaaagaagagtg--tttctagggttggggaaggaagtcccacctccccactttttctctgg-ttgtctttgggaatatttctccctttaagtact---------------------------tagggacagatctcttgccagggaacccaagatggtggggaaactggttatccacttcaatctca--ctttttccagtgtagaaactggcggtgaggtgggggaagttttccacatgcttggtgctaggcagatttgggagagggatgtcacggatttggaagtctgattcttacagcgtctgcttgaagttttttacttctttgttgccacgggcactgttccatc----ttcatatttgagttctgggatattgc---tggtgataatctcagcaccgtgtatttgttgtaggttttctgtggaggaaaaat----aaagccagcttccttatatgcagccattttggaacca-aactctcACACATTCCATGGAACATTTCTAGCCAGCAAGGTACAATGACTAGCAAGGAAACAAAC-----------------TTTTTTTTTCCTTCAGTATTTCAGTTGACTCACAAGAACATAAAATGTGACCTATC-TTTTCATGTGGCCAACTTTAAATGTTAACTTAATATCTTAGATAAAAATAGTTTAAAATACACATCCATTTAAGTTAAAAAGAA
s panTro5.chr6              29262986 878 + 175400573 cctcttggtcttgacttctttttgatatcacatggagtctgcagtccaggttttccttggccctagtaaatgactggagcactgccggacccaaatgtagaaggtcttacagggggatatcccaatagggtgggaagtctggctagaatttcgtgctcagggaacctgtggaacatacctcctatggtgtggcgctgctgaacagcttcaactgatttggcgtctcctttggctgagttaaagaagagtg--tttctagggttggggaaggaagtcccacctccccac-ttttctctgg-ttgtctttgggaatatttctccctttaggtact---------------------------gagggatagatctcttgccagggaacccaagatggtggggaaactggttatccacttcaatctca--ctttttccagtgtagaaactggcggtgaggtgggggaagttttccacatgcttggtgctaggcagatttgggagagggatgtcacggatttggaagtctgattcttacagcgtctgcttgaagttttttacttctctgttgccacaggcactgttccatc----ctcatacttgagttctgggatattgc---tggtgataatttcagcaccgtgtatttgttttaggttttctgtgtaggaaaagt----aaagccagcttccttctatgcagccattttggaacca-aactctcACACATTCCATGGAACATTTCTAGCCAGCAAGGTACAATGACTAGCAAGGAAACAAAC---------------TTTTTTTTTTTTCTTCAGTATTTCAGTTGACTCACAAGAACATAAAATGTGACCTATC-TTTTCATGTGGCCAACTTTAAATGTTAACTTAATATCTTAGATAAAAATAGTTTAAAATACACATCCACTTAAGTTAAAAAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29509055 878 + 173848474 cctcttggtcttgccttctttttgatatcacatggagtctgcagtccaggttttccttggccctagtaaatgactggagcactgccggacccaaatgtagaaggtcttacagggggatatcccaatagggtgggaagtctgactagaatttcgtgctcagggaacctgtggaacatacctcctatggtgtggcgctgctgaacagcttcaactgatttggcgtctcctttggctgagttaaagaagagtg--tttctagggttggggaaggaagtcccacctccccac-ttttctctgg-ttgtctttgggaatatttctccctttaggtact---------------------------gagggatagatctcttgccagggaacccaagatggtggggaaactggttatccacttcaatctca--ctttttccagtgtagaaactgggggtgaggtgggggaagttttccacatgcttggtgctaggcagatttgggagagggatgtcacggatttggaagtctgattcttacagcgtctgtttgaagttttgtacttctctgttgccacaggcactgttccatc----ctcatacttgagttctgggatattgc---tggtgataatttcagcaccgtgtatttgttttaggttttctgtgtaggaaaagt----aaagccagcttccttctatgcagccattttggaacca-aactctcACACATTCCATGGAACATTTCTAGCCAGCAAGGTACAATGACTAGCAAGGAAACAAAC---------------TTTTTTTTTTTTCTTCAGTATTTCAGTTGACTCACAAGAACATAAAATGTGACCTATC-TTTTCATGTGGCCAACTTTAAATGTTAACTTAATATCTTAGATAAAAATAGTTTAAAATACACATCCACTTAAGTTAAAAAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5306092 878 +   6154872 cctcttggtcttgccttctttttgatatcacatggagtctgcag-ccaggttttccttggccctagtaaatgactggagcactgccggacccaaatgtagaagatcttacagggggatatcccaatagggtgggaagtctggctagaatttcgtgctcagggaacctgtggaacatacctcctatggtgtggcgctgctgatcagcttc-actgatttggcgtctcctttggctgagttaaagaagagtg--tttctagggttggggaaggaagtcccacctccccacttttcctctgg-ttgtctttgggaatatttctccctttaggtact---------------------------tagggatagatctcttgtcagggaacccaagatggtggggaaactggttatccacttcaatctca--ctttttccagtgtagaaactgagggtgaggtgggggaagttttccacatgcttggtgctaggtagatttgggagagggatgtcacggatttggaagtctgattcttacagcgtctgcttgaagttttttacttctctgttgccacaggcactgttccatc----ctcatatttgagttctgggatattgc---tggtgataatttcagcaccgtgtatttgttttaggttttctgtgtaggaaaagt----aaagccagcttccttctatgcagccattttggaacca-aactctcACACATTCCATGGAACATTTCTAGCCAGCAAGGTACAATGACTA-CAAGGAAACAAAC-------------TTTTTTTTTTTTTTCTTCAGTATTTCAGTTGACTCACAAGAACATAAAATGTGACCTATC-TTTTCATGTGGCCAACTTTAAATGTTAACTTAATATCTTAGATAAAAATAGTTTAAAATACACATCCACTTAAGTTGAAAAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74312720 866 + 122973662 cctcttggtcttgccttctttttgacatcacatggagtctgaagtccaggttttccttggccctagtaaatgattagagcactgcccgacccaaatgtagaaggtcttac-aggggatatcccaatagggtgggaagtctggctagaattatatgctcagggagcctgtggaaaataactcctatggtatggcgctgctgaccagcttc-gctaatttggcgtctcctttggctgagttgaagaagagtg--tttctagggttggggaaggatgttccacctccccactttttctctggtttgtctttgggaatatttctccctttaggtact---------------------------tagggacagatctcttgccagagaacccaagatggtggggaaactggttatccacttcaatctca--ctttttccagtgtagaaactgggggtgaggtgggggaagttttccacatgcttggtgctagacagatttgggagagggatgtcacggatttggaagtctaattcttacagcgtctgcttgaagttttttacttctctgttgccacaggcactgttccatcctcactcatatttgagttct-ggatattgc---tggtgataatctcagcatagtgtatttgttttaggttttctgtggaggaaaagt----aaagccagcttccttctatgcagccatttaggaaccA-AACTC-AACACATTCCATGGAACATTTCTAACCAGCAAGGTACAATGACTAGCAAGGAAACAAAC---------------------TTTGTTCTTCAGTATTTCAGTTGACTCAC---AACATAAAATGTGACCTGTC-TTTTCATTTGGCCAACTTTAAATGTTAACTGAATATCTTAGATAAAAATAGTTTAAAATACACAGCCACTTA-----AAAAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29476850 917 + 172585720 cctcttggtcttgccttctttttgacatcacatggagcctgacgtccaggtgtttgttggccctagtaaatgactggagcactgccggacccaaatggagaaggtcttac-tggggatatcccaataggatgggaaggctggctagaattctgtgttcagggaacctggggaacatatctcctatggtgtggtgctgctgaccaacttt-gctgatttggtgtctcctttggctgagttaaagaagagtg--tttctagggctggggaaggaagtcccacctccccacttcttctctgg-ttgtctttgggaatatttctccctttagatactta-ggtacctcaacctgtgggttgaagtagggacagatctcttgccagggagcccaagatggtggggaaactagttatccacttcaatctca--ctttttccagtgtagaaactgggggtgaggtggggtaag-tttccacatgcttggtgctaggcagatttgggagaaggatgtcacagatttggaggtctgagtcttatagtgcctgcttgaagttttttacttctctatggccacaggcacagtcccatc----ctcatatttgagttctgggatattgc---tggtgataatctcagcaccgtgtatttgttttaggttttccgtggaggaaaagt----aaagccagcttccttctatgcagccattttggaaccagaactctcACACATTCCATGGAACATTTCTAGCCAGCAAGGTACAAAGAATAGCAAGGAAACAAACttttttttttttttctctttttttCCTCTTCAGTATTTCAGTTGACTCACAAGAACATAAAATGTGACCTATC-TTTTCATTTGGCC-ACTTTAAATGTTAACTTAATATCTTAGATAAAAATAGTTTAAAATACACATCCACTTAAGTTAAAAAGAA
i rheMac8.chr4             C 0 I 14
s macFas5.chr4              29137969 917 - 170955103 cctcttggtcttgccttctttttgacatcacatggagcctgacgtccaggtgtttgttggccctagtaaatgactggagcactgccggacccaaatggagaaggtcttac-tggggatatcccaataggatgggaaggctggctagaattctgtgttcagggaacctggggaacatatctcctatggtgtggtgctgctgaccagcttt-gctgatttggtgtctcctttggctgagttaaagaagagtg--tttctagggctggggaaggaagtcccacctccccacttcttctctgg-ttgtctttgggaatatttctccctttagatactta-ggtacctcaacctgtgggttgaagtagggacagatctcttgccagggagcccaagatggtggggaaactagttatccacttcaatctca--ctttttccagtgtagaaactgggggtgaggtggggtaag-tttccacatgcttggtgctaggcagatttgggagaaggatgtcacagatttggaggtctgagtcttatagtgcctgcttgaagttttttacttctctatggccacaggcacagtcccatc----ctcatatttgagttctgggatattgc---tggtgataatctcagcaccgtgtatttgttttaggttttccgtggaggaaaagt----aaagccagcttccttctatgcagccattttggaaccagaactctcACACATTCCATGGAACATTTCTAGCCAGCAAGGTACAAAGAATAGCAAGGAAACAAACttttttttttttttctctttttttCCTCTTCAGTATTTCAGTTGACTCACAAGAACATAAAATGTGACCTATC-TTTTCATTTGGCC-ACTTTAAATGTTAACTTAATATCTTAGATAAAAATAGTTTAAAATACACATCCACTTAAGTTAAAAAGAA
i macFas5.chr4             C 0 I 14
s macNem1.NW_012011356v1     2128058 916 -   2996164 cctcttggtcttgccttctttttgacatcacatggagcctgacgtccaggtgtttgttggccctagtaaatgactggagcactgccggacccaaatggagaaggtcttac-tggggatatcccaataggatgggaaggctggctagaattctgtgttcagggaacctggggaacatatctcctatggtgtggtgctgctgaccagcttt-gctgatttggtgtctcctttggctgagttaaagaagagtg--tttctagggctggggaaggaagtcccacctccccacttcttctctgg-ttgtctttgggaatatttctccctttagatactta-ggtacctcaacctgtgggttgaagtagggacagatctcttgccagggagcccaagatggtggggaaactagttatccacttcaatctca--ctttttccagtgtagaaactgggggtgaggtgggggaag-tttccacatgcttggtgctaggcagatttgggagaaggatgtcacagatttggaggtctgagtcttatagtgcctgcttgaagttttttatttctctatggccacaggcacagtcccatc----ctcatatttgagttctgggatattgc---tggtgataatctcagcaccatgtatttgttttaggttttccgtggaggaaaagt----aaagccagcttccttctatgcagccattttggaaccagaactctcACACATTCCATGGAACATTTCTAGCCAGCAAGGTGCAAAGAATAGCAAGGAAACAAAC-TTTTTTTTTTTCTCTCTTTTTTTCCTCTTCAGTATTTCAGTTGACTCACAAGAACATAAAATGTGACCTATC-TTTTCATTTGGCC-ACTTTAAATGTTAACTTAATATCTTAGATAAAAATAGTTTAAAATACACATCCACTTAAGTTaaaaagaa
i macNem1.NW_012011356v1   C 0 I 16
s cerAty1.NW_012001495v1     1996233 901 -   2157725 cctcttggtcttgccttctttttgacatcacatggagcctgaagtccaggtgtttgttggccctagtaaatgactggagcactgccagacccaaatggagaaggtcttac-cggggatatcccaataggatgagaaggctggctagaattctgtgttcagggaacctggggaacatatctcctatggtgtggtgctgctgaccagcttc-gctgatttggtgtctcctttggctgagttaaagaagagtg--tttctagggctggggaaggaagtctcacctcctcactttttctccgg-ttgtctttgggaatatttctccctttagatactta-ggtacctcaacctgtgggttgaagtagggacagatctcttgccagggaacccaagatggtggggaaaccagttatccacttcaatctca--ctttttccagtgtagaaactgggggtgaggtgggggaagttttccacatgcttggtgctaggcagatttgggagagggatgtcacagatttggaggtctgagtcttatagtgcctgcttgaagttttttacttctctatggccacaggcacagtcccatc----ctcatatttgagttctgggatattgc---tggtgataatctcagcaccgtgtatttgttttaggttttccgtggaggaaaagt----aaagccagcttccttctatgcagccattttggaaccagaactctcACACATTCCATGAAACATTTCTAGCCAGCAAGGTACAAAGAATAGCAAGGAAACAAAC-----------------TTTTTTTTCTCTTCAGTATTTCAGTTGACTCACAAGAACATAAAATGTGACCTATC-TTTTCATTTGGCC-ACTTTAAATGTTAACTTAATATCTTAGATAAAAATAGTTTAAAATACACATCCACTTAAGTTaaaaagaa
i cerAty1.NW_012001495v1   C 0 I 16
s chlSab2.chr17             28432284 911 -  71996105 cctcttggtcttgccttctttttgacatcacatggagcctgaagtccatgtgtttgttggccctggtaaatgactgtagcactgccaaacccaaatggagaaggtcttac-aggggatatcccaataggatgggaaggctggctagaattttgtgttcagggaacctggggaacatatctcctatggtgtggtgctgctgaccagcttc-actgatttggtgtctcctttggctgagttaaagaagagtg--tttctagggctggggaaggaagtcccacctccccactttctctctgg-ctgtctttgggaatatttctccctttagatactta-ggtacctcaacctgtgggttgaggtagggacagatctcttgccagggaacccaagatggtggggaaactagttatccacttcaatctca--ctttttccagtgtagaaactgggggtgaggttggggaagttttccacatgcttggtgccaggcagatttgggagagggatgtcacagatttggaggtctgagtcttatagtgcctgcttgaagttttttacttctctgtggccacaggcacagtcccatc----ctcatatttgagttctgggatattgc---tggtgataatctcagcaccgtgtatttgttttaggttttccgtggaggaaaagt----aaagccagcttccttctatgcagccattttggaaccagaactctcACACATTCCATGTAACATTTCTAGCCAGCAAGGTACAAAGAATAGCAAGAAAACAAAC-------ttttttttttttttttttCTCTTCAGGATTTCATTTGACTCACAAGAACATAAAATGTGACCTATC-TTTTCATGTGGCC-ACTTTAAATGTTAACTTAATATCTTAGATAAAAATAGTTTAAAATACACATCCACTTAAGTTaaaaagaa
i chlSab2.chr17            C 0 I 16
s manLeu1.NW_012104165v1     2138890 908 +   2316924 cctcttggtcttgccttctttttgacatcacatggagcctgaagtccaggtgtttgttggccctagtaaatgactggagcactgccagacccaaatggagaaggtcttac-cggggatatcccaataggatgagaaggctggctagaattctgtgttcagggaacctggggaacatatctcctatggtgtggtgctgctgaccagcttc-gctgatttggtgtctcctttggctgagttaaagaagagtg--tttctagggctggggaaggaagtctcacctccccactttttctccgg-ttgtctttgggaatatttctccctttagatactta-ggtacctcaacctgtgggttgaagtagggacagatctcttgccagggaacccaagatggtggggaaaccagttatccacttcagtctca--ctttttccagtgtagaaactgggggtgaggtgggggaagttttccacatgcttggtgctaggcagatttgggagagggatgtcacagatttggaggtctgagtcttatagtgcctgcttgaagttttttacttctctatggccacaggcacagtcccatc----ctcatatttgagttctgggatattgc---tggtgatactctcagcactgtgtatttgttttaggttttccgtggaggaaaagt----aaagccagcttccttctatgcagccattttggaaccagaactctcACACATTCCATGGAACATTTCTAGCCAGCAAGGTACAAAGAATAGCAAGGAAACAAAC----------TTTTTTTTTTTTTTTCTCTTCAGTATTTCAGTTGACTCACAAGAACATAAAATGTGACCTATC-TTTTCATTTGGCC-ACTTTAAATGTTAACTTAATATCTTAGATAAAAATAGTTTAAAATACACATCCACTTAAGTTaaaaagaa
i manLeu1.NW_012104165v1   C 0 I 16
s colAng1.NW_012115566v1     2004632 905 -   3067355 cctcttgatcttgccttctttctgacatcacatggagcctgaaatccaggtgtttgttggccctagtaaatgactggagcactgcccgacccagatggagaaggtcttac-aggggatatcccaataggatgggaaggctggctagaattttgtgctcagggaacctggggaacgtatctcctatggtgtggtgctgctgagcagcttc-gctgatttggtgtctcctttggctgagttaaagaagagtg--cttctagggctggggaaagaagtcccacctccccactttttctctgg-ttgtctttggaaatatttctccctttagatactta-ggtacctcaacctgtgggttgaggtagggacagatctcttgccagggaacccaagatggtggggaaactagttatgcacttcaatgtca--ctttttccagtgtagaaactgggggtgaggtgggggaagttttccacatgcttggtgctaggcagatttgggagatggatgtcacagatttggaggtctgagtcttatagtgcctgcttgaagttttttacttctctgtggccacaggcaagatcccatc----ctcatatttgagttctgggatattgc---tggtgataatctcagcaccgtgtatttattttaggttttccctggaggaaaagt----aaagccagcttccttctatgcagccattttggaaccagaGCGCTCACACATGCCATGGAACATTTCTAGCCAGAAAGGTACAAAGAATAGCAAGGAAACAAAC-------------TTTTTTTTTTTTCTCTTCAGTATTTCAGTTGACTCACAAGAACATAAAATGTGACCTATC-TTTTCATGTGGCC-ACTTTAAATGTTAACTTAATATCTTAGATAAAAACAGTTTAAAATATACATCCACTGAAGTTaaaaagaa
i colAng1.NW_012115566v1   C 0 M 1070
s calJac3.chr4             171524931 897 - 171630274 cctctaggtcttgccttctttttgacatcacatgcagcatgaagtccaggttttcgttggccctagtaaatgactggagctcagcctgacacaaatggagaaggtcttaa-aagggatattccaggagggtggaaaagctggctagaattttgtgctcaggggacctgtggaacataccttctatggtgtggtgctgctaaccagcttc-tctgatttcgtgtctcctttggctgagttaaagaagggtgtttttctagggctgagaatggaagtcccacctccccactttttctctgg-ttgtctttcagaatatttctccctttaggtacttatgatactt---cctgtgggttgaggaaggaacagatcccttgccagggaacttaagatggtggggacactggttatccacttcaacctcattttttttctagtgtagaaactgggggtgaggtggggt-agttttgtacgtgtttggtgctaggcagatttgggaaagggatgtcacagatttggaagtctgattcttacagagtgtgattgaagttttttgcttctctgtggccacaggcactgtttcatc----ctcat--ttgggttctgggatattgttggtggtgataatctcagcattgtacatttgttttaggttttccatggggaaaaagtgaaggaagccagcttccttctatgcaaccgttttagaaccagaactctcACACATCCCATGGAATGTTTCTAGCCAGCAAGGTACAATAAGTAGCAAGGAAACAACT-----------------------TTTTTTTCAATGTTTCAGTTGACTCACAAGAATATAAAATGTGACCTATCATTTTCATGTGGCC-ACTTTAAATGTT-----AATATCTTAGATTAAAATAGTTTAAAATACACATCCACTTAAGTTAAAAAGAG
i calJac3.chr4             I 6814 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I

a score=2872151.000000
s hg38.chr6_GL000254v2_alt    288683 532 +   4827813 -------TAATTTAAAGTTTTATTATTCTTTGATAGTTTTTCTTTTGATGCTACACCTAGTGACTACCATATTTTAAAACAGACATGTTCTAATTGCTCTTGAATCTTCAACTCGAAAGAAACT--ATGGTTTTATAAATTAGTGATAACAGTGAGTGTCCTCTTTAAAAAATATCTGCCATTTCTGACAAATGACAAATAGCTGATATTATTTTTTCTTAAAAGGAACTCTATTCTTTTAACATACAGTCTCTCTTGTTTAATAAAACTGAAAGTAAAGAATAGAtagaaatagtcctacctcagttcaggtcaggtttt-gttgccaacagagttatgaaaacttttagttttcTACctgggtgtggtagctctcaccagtaataccagctacttgagagaactgcttgaggccaggagtttgagaccagcttgggtaacatagtgagaccctgtctcaaa-g-aaaaaaaggaaaGCTTTTAGTTTTCTGACCATTTTATTTTTG---TTTA-------TTTTAA-tttttttatttcaatagggttttgga
s panTro5.chr6              29263864 537 + 175400573 -------TAGTTTAAAGTTTTATTATTCTTTGATAGTTTTTCTTTTGATGCTACACCTAGTGACTACCATATTTTAAAACAGACATGTTCTAATTGCTCTTGAATCTTCAACTCGAAAGAAACT--ATGGTTTTATAAATTAGTGATAACAGTGAGTGTCCTCTTTAAAAAATATCTGCCATTTCTGACAAATGACAAATAGCTCATATTATTTTTTCTTAAAAGGAACTCTATTCTTTTAACATACAGTCTCTCTTGTTTAATAAAACTGAAAGtaaagaatagatagaaatagtcctacctcagttcaggtcaggtttt-gttgccaacagagttatgaaaac--ttaGTTTTCTACctgggtatggtagctctcaccagtaataccagctacttgagagaattgcttgaggccaggagtttgagaccagcttgggtaacatagtgagaccctgtctcaaa-g-aaaaaaaggaaaGCTTTTAGTTTTCTGACCATTTTATTTTTG---TTTATTTTAATTTTTAA-tttttttatttcaatagggttttgga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29509933 537 + 173848474 -------TAGTTTAAAGTTTTATTATTCTTTGATAGTTTTTCTTTTGATGCTACACCTAGTGACTACCATATTTTAAAACAGACATGTTCTAATTGCTCTTGAATCTTCAACTCGAAAGAAACT--ATGGTTTTATAAATTAGTGATAACAGTGAGTGTCCTCTTTAAAAAATATCTGCCATTTCTGACAAATGACAAATAGCTCATATTATTTTTTCTTAAAAGGAACTCTATTCTTTTAACATACAGTCTCTCTTGTTTAATAAAACTGAAAGTAAAGAATAGAtagaaatagtcctacctcagttcaggtcaggtttt-gttgccaacagagttATGAAAAC--TTAGTTTTCTACctgggtatggtagctctcaccagtaataccagctacttgagagaattgcttgaggccaggagtttgagaccagcttgggtaacatagtgagaccctgtctcaaa-g-aaaaaaaggaaaGCTTTTAGTTTTCTGACCATTTTATTTTTG---TTTATTTTAATTTTTAA-tttttttatttcaatagggttttgga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5306970 540 +   6154872 -------TAGTTTAAAGTTTTATTATTCTTTGATAGTTTTTCTTTTGATGCTACACCTAGTGACTACCATATTTTAAAACAGACATGTTCTAATTGCTCTTGAATCTTCAACTCGAAAGAAACT--ATGGTTTTATAAATTAGTGATAACAGTGAGTGTCCTCTTTAAAAAATATCTGCCATTTCTGACAAATGACAAATAGCTCATATTATTTTTTCTTAAAAGGAACTCTATTCTTTTAACATACAGTCTCTCTTGTCTAATAAAACTGAAAGTAAAGAATAGAtagaaatagtcctacctcagttcaggtcaggtttt-gttgccaacagagttatgaaaacttttagttttcTACctgggtatggtagctctcaccagaaataccagctacttgagagaattgcttgaggccaggagtttgagaccagcttgggtaacatagtgagaccctgtctcaaa-gaaaaaaaaggaaaGCTTTTAGTTTTCTGACCATTTTATTTTTG---TTTATTTTAATTTTTAA-tttttttatttcagtagggttttgga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74313586 528 + 122973662 -------TAGTTTAAAGTTTTATTATTCTTTGATAGTTTTTCTTTTGATGCTACACCTAGTGACTACCATATTTTAAAACAGAC--GTTCTAATTGCTCTTGAATCTTCAAGTCGAAAGAAACT--ATGGTTTTATAAATTAGTGATAACAGTGAGTGTTCTCTTTAAAAAATATGTGTCATTTCTGACAAATGACAAATAGCTC--ATTATTTTTTCTTAAAAGGAACTC--TTCTTTTAATATACAATTTCTCTTGTTTAATAAAACTGAAAGTAAAGAATAGAtagaaatagtcctacctcagttcaggtcaggtttt-gttgccaacagagttatgaaaacttttagttttcTACctgggcatggtagctctggccagtaataccagctacttgagagaactgcttgaggccaggagttcgagaccagcttgggcaacatagtgagaccctgtctcaaa-g-aaaaaaaggaaaGCTTTTAGTTTTCTGACCATTTTATT-------TTAATTTTAATTTTTTA--ttttttatttcaatagggttttgga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29477781 539 + 172585720 -------TAGTTTAAAGTTTTATTATTCTTTGATAGTTTTTCTTGTGATGCTACATCTAGTGACTACCATATTTTAAAACACACATGTTCTAATTGCTCTTGAATCTTCAACTTGAAAGAAACTCCATGGTTTTATAAATTAGTGATAACAGTGAGTGTCCTCTTTAAAAAA-ATCTGCCATTTCTGACAAATGAAAAATAGCTCATATTATTTTTTCTTAAAAGGAACTCTATTCTTTTAACATACGGTTTCTCTTGTTTAATAAAACTGAAAGTAAAGAGTAGAtagaaatagtcctacatcagttcaggtcaggtttt-gttgccaacagagttacgaaaacttttagttttcTACctgggcatggtggctctcacctgtaataccagctacttgaaagaattgcttgaggccaggagtttgagatcagcctgggcaacatagtgagac----tcaaaat-a-aaaaaaaGGAAAGCATTTAGTGTTCTGACCATTTTAGTTTTGTTTTTTATTTGAATTTTTAA-tttttttatttcaataggcttttggg
i rheMac8.chr4             I 14 C 0
s macFas5.chr4              29138900 539 - 170955103 -------TAGTTTAAAGTTTTATTATTCTTTGATAGTTTTTCTTGTGATGCTACATCTAGTGACTACCATATTTTAAAACACACATGTTCTAATTGCTCTTGAATCTTCAACTTGAAAGAAACTCCATGGTTTTATAAATTAGTGATAACAGTGAGTGTCCTCTTTAAAAAA-ATCTGCCATTTCTGACAAATGAAAAATAGCTCATATTATTTTTTCTTAAAAGGAACTCTATTCTTTTAACATATGGTTTCTCTTGTTTAATAAAACTGAAAGTAAAGAGTAGAtagaaatagtcctacatcagttcaggtcaggtttt-gttgccaacagagttACGAAAACTTTTAGTTTTCTACctgggcatggtggctctcacctgtaataccagctacttgaaagaattgcttgaggccaggagtttgagatcagcctgggcaacatagtgagac----tcaaaat-a-aaaaaaaGGAAAGCATTTAGTGTTCTGACCATTTTAGTTTTGTTTTTTATTTGAATTTTTAA-tttttttatttcaataggcttttggg
i macFas5.chr4             I 14 C 0
s macNem1.NW_012011356v1     2128990 540 -   2996164 -------TAGTTTAAAGTTTTATTATTCTTTGATAGTTTTTCTTGTGATGCTACATCTAGTGACTACCATATTTTAAAACACACATGTTCTAATTGCTCTTGAATCTTCAACTTGAAAGAAACTCCATGGTTTTATAAATTAGTGATAACAGTGAGTGTCCTCTTTAAAAAA-ATCTGCCATTTCTGACAAATGAAAAATAGCTCATATTATTTTTTCTTAAAAGGAACTCTATTCTTTTAACATACGGTTTCTCTTGTTTAATAAAACTGAAAGTAAAGAGTAGAtagaaatagtcctacatcagttcaggtcaggtttt-gttgccaacagagttacgaaaacttttagttttcTACctgggcatggtggctctcacctgtaataccagctacttgaaagaattgcttgaggccaggagtttgagatcagcctgggcaacatagtgagac----tcaaaat-a-aaaaaaaGGAAAGCATTTAGTGTTCTGACCATTTTAGTTTTGTTTTTTAATTGAATTTTTAATtttttttatttcaataggcttttggg
i macNem1.NW_012011356v1   I 16 C 0
s cerAty1.NW_012001495v1     1997150 539 -   2157725 -------TAGTTTAAAGTTTTATTATTCTTTGATAGTTTTTCTTGTGATGCTACACCTAGTGACTACCATATTTTAAAACAGACATGTTCTAATTGCTCTTGAATCTTCAACTTGAAAGAAACTCCATGGTTTTATAAATTAGTGATAACAGTGAGTGTCCTCTTTAAAAAA-ATCTGCCATTTCTGACAAATGACAAATAGCTCATATTATTTTTTCTTAAAAGGAACTCTATTCTTTTAACATACAGTTTCTCTTGTTTAATAAAACTGAAAGTAAAGAGTAGAtagaaatagtcctacatcagttcaggtcaggtttt-gttgccaaccgagttatgaaaacttttagttttcTACctgggcatggtggctctcacctgtaataccagctacttgagagaattgcttgaggccaggagtttgagatcagcctgggcaacatagtgagac----tcaaaat-a-aaaaaaaGGAAAGCATTTAGTGTTCTGACCATTTTAGTTTTGTTTTTTATTTGAATTTTTAA-tttttttatttcaataggtttttggg
i cerAty1.NW_012001495v1   I 16 C 0
s chlSab2.chr17             28433211 541 -  71996105 -------TAGTTTAAAGTTTTATTATTCTTTGATAGTTTTTCTTTTGATGCTACACCTAGTGACTACCATATTTTAAAACAGACATGTTCTAATTGCTCTTGAATCTTCAACTTGAAAGAAACTCTATGGTTTTATAAATTAGCGATAACAGTGAGTGTCCTCTTTAAAAAATATCTGCCATTTCTGACAAATGATAAATAGCTCATATTATTTTTTCTTAAAAGGAACTCTATTCTTTTAACATGCAGTTTCTCTTGTTTAATAAAACTGAaagtaaagagtagatagaaatagtcctacatcagttcaggtcaggtttt-gttgccaacagagttacgaaaacttttagttttcTACctgggcatggtggctctcacctgtaataccagctacttgagagaattgcttgaggccaggagtttgagatcagcctgggcaacatagtgagac----tcaaaataa-aaaaaaaGGAAAGCATTTAGTGTTCTTACCATTTTAGTTTTGTTTTTTATTTGAATTTTTAA-tttttttatttcaataggttttttgg
i chlSab2.chr17            I 16 C 0
s manLeu1.NW_012104165v1     2139814 538 +   2316924 -------TAGTTTAAAGTTTTATTATTCTTTGATAGTTTTTCTTGTGATGCTACACCTAGTGACTACCATATTTTAAAACAGACATGTTCTAATTGCTCTTGAATCTTCAACTTAAAAGAAACTCCATGGTTTTATAAATTAGTGATAACAGTGAGTGTCCTCTTTAAAAAA-ATCTGCCATTTCTGACAAATGACAAATAGCTCATATTATTTTTTCTTAAAAGGAACTCTATTCTTTTAACATACAGTTTCTCTTGTTTAATAAAACTGAAAGTAAAGAGTAGAtagaaatagtcctacatcagttcaggtcaggtttg-gttgccaacagagttacgaaaacttttagttttcTCCctgggcatggtggctctcacctgtaataccagctacttgagagaattgcttgaggccaggagtttgagatcagcctgggcaacatagtgagac----tcaaaat-a-aaaaaaaGGAAAGCATTTAGTGTTCTGACCA-TTTATTTTTGTTTTTTATTTGAATTTTTAA-tttttttatttcaatagatttttggg
i manLeu1.NW_012104165v1   I 16 C 0
s calJac3.chr4             171525828 550 - 171630274 AAAAACTAAGTTTAAAGTTTTATTATTCTTTGATAATTTTTCTTTTGATGCTACACCTAGTGACTACCATATTCTAAAACAGACATGTTCTAATTACTCTTGAATCTTCAACTTGAAAGAAACTGTATGGTTTTATAAATTAGTGATAACAGCAAGTGTCCTTTTTAAAAAACATCTGCCATTCTTGACAAATGACGAATAGCTAGTATTACTTTCTCTTAAAAGGAATTCTATTCTTTTAAGGTAGAGCTTCTCTTGTTTAATAAAACTGAAAGTAAAGAATACATAGAAATAGTCCTGCATCAATACACAGCAGGTTTTGGTTGCCAAAAGAGTTATGGATAGTTTTAGTTTTCTA-ctgggcatggtggttctcacc-gtaatcccagctatttgcgagaattgcttgaggccaggagtttgagaccagcctgggcaacatggtgagaccctgtctcaaa-a-acaaaaaTGAAAGCGTTTAGTTTTCTGACCattttatttttattttatattttagtttttaa-ttGttttatttcagtagaattttggg
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e colAng1.NW_012115566v1     2005537 1070 -   3067355 M

a score=1021672.000000
s hg38.chr6_GL000254v2_alt    289215 165 +   4827813 gggacaggtggtgtttccttacatgaataagttctttagtggcgatttctgagattttggtgcacccatcatttgagcagtgtacactgtacacagtgtgtagtgttttatccctcaccagcccccacccttttccccgagtccccaaagtccaatgtatcgttc
s panTro5.chr6              29264401 143 + 175400573 gggac--gtg--------------------gttctttagtggcgatttctgagattttagtgcacccatcatttgagcagtgtacactgtacccagtgtgtagtgttttatccctcaccagcccccacccttttccccgagtccccaaagtccaatgtatcgttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29510470 145 + 173848474 gggacatgtg--------------------gttctttagtggcgatttctgagattttagtgcacccatcatttgagcagtgtacactgtacccagtgtgtagtgttttatccctcaccagcccccacccttttccctgagtccccaaagtccaatgtatcgttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5307510 145 +   6154872 gggacaggtg--------------------gttctttagtggcgatttctgagattttggtgcacccatcatttgagcagtgtacactgtacccagtgtgtagtgttttatccctcaccagcccccacccttttccccgagtccccaaagtccaatgtatcgttc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74314114 155 + 122973662 gggataggtggtgtttagttacatgaataagttctttagtggcgatttctgagattttggtgtacccatcatttgagcagtgtacactgtacccaatgtgtagtgttttat----------cccccacccttttccttgagtccccaaagtccaatgtattgttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29478320 165 + 172585720 gggacaggtggtgtttggttacatgaataagttctttagtggtgatttctgagattttggtgcatccatcatttgagcagtgtacactgtacccaatgtgtagtgttttatccctcaccaacccccacccttttccccgagtccccaaagtccaatgtattgttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29139439 165 - 170955103 gggacaggtggtgtttggttacatgaataagttctttagtggtgatttctgagattttggtgcatccatcatttgagcagtgtacactgtacccaatgtgtagtgttttatccctcaccaacccccacccttttccccgagtccccaaagtccaatgtattgttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2129530 165 -   2996164 gggacaggtggtgtttggttacatgaataagttctttagtggtgatttctgagattttggtgcatccatcatttgagcagtgtacactgtacccaatgtgtagtgttttatccctcaccaacccccacccttttccccgagtccccaaagtccaatgtattgttc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     1997689 165 -   2157725 gggacaggtggtgtttggttacatgaataagttctttagtggtgatttctgagattttggtgcatccatcatttgagcagtgtacactgtacccaatgtgtagtgttttatccctcaccaacccccacccttttccccgagtccccaaagtctaatgtattgttc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28433752 165 -  71996105 gggacaggtggtgtttggttacacgaataagttctttagtggtgatttctgagattttggtgcagccatcatttgagcagtgtacactgtacccaatgtgtagtgttttatccctcaccaacccccacccttttccccgagtccccaaagttcaatgtatcgttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2140352 165 +   2316924 gggacaggtggtgtttggttacatgaataagttctttagtggtgatttctgagattttggtgcatccatcatttgagcagtgtacactgtacccaatgtgtagtgttttatccctcaccaacccccacccttttccccgagtcaccaaagtccaatgtattgttc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2006645 165 -   3067355 gggacaggtggtgtttggttacattaataagttctttagtggtgatttctgagattttggtgcatccatcatttgagcagtgtacactgtacccaatgtgtagtgttttatccctcaccaacccccacccttttccccgagtccccaaagtccaatgtattgttc
i colAng1.NW_012115566v1   M 1070 C 0
s calJac3.chr4             171526378 165 - 171630274 agaacaggtggtgtttggttacatgaataagttgtttagtggtgatttctgagatttcggtgcacccatcactcgagcagcgtacactacacacaatgcgtagtgctttattgctcaccaacccccaccctttcccctgagtccccaaagtccaatgtatcattc
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I

a score=6006.000000
s hg38.chr6_GL000254v2_alt    289380 1 +   4827813 t
s panTro5.chr6              29264544 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29510615 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5307655 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74314269 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29478485 1 + 172585720 t
i rheMac8.chr4             C 0 I 6
s macNem1.NW_012011356v1     2129695 1 -   2996164 t
i macNem1.NW_012011356v1   C 0 I 6
s cerAty1.NW_012001495v1     1997854 1 -   2157725 t
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28433917 1 -  71996105 t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2140517 1 +   2316924 t
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2006810 1 -   3067355 t
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171526543 1 - 171630274 t
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macFas5.chr4              29139604 0 - 170955103 C

a score=603712.000000
s hg38.chr6_GL000254v2_alt    289381 166 +   4827813 tatgcctttgcatTTCTGACCATTTTAGATTCAGAATTATGGATAAGGGATTTTCAGCCTATACTGATCATGTCTAGAAGTTCTGTTTGTTTCTTT-AAAAAAAAGTTCATGTAGCAGCAGATAACTAATACAACCAGAAATAAATGAGATATTGTTTCCTCAAAtt
s panTro5.chr6              29264545 167 + 175400573 tatgcctttgcatTTCTGACCAATTTAGATGCAGAATTATGGATAAGGGATTTTCAACCTATACTGATCATGTCTAGAAGTTCTGTTTGTTTCTTTAAAAAAAAAGTTCATGTAGCAGCAGATAACTAATACAACCAGAAATAAATGAGATATTGTTTCCCCAAAtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29510616 166 + 173848474 tatgcctttgcatTTCTGACCAATTTAGATTCAGAATTATGGATAAGGGATTTTCAACCTATACTGATCATGTCTAGAAGTTCTGTTTGTTTCTTT-AAAAAAAAGTTCATGTAGCAGCAGATAACTAATACAACCAGAAATAAATGAGATATTGTTTCCCCAAATT
i panPan2.chr6             C 0 I 127
s gorGor5.CYUI01015250v1     5307656 166 +   6154872 tatgcctttgcatTTCTGACCATTTTAGATTCAGAATTATGGATAAGGGATTTTCAACCTATACTGATCATGTCTAGAAGTTCTGTTTGTTTCTTT-TAAAAAAAGTTCATGTAGCAGCAGATAACTAATACAACCAGAAATAAATGAGATATTGTTTCCCCAAAtt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74314270 161 + 122973662 tttgcctttgcatTTCTGACCATTTTACATTCAGAATTATGGATAAGGGATTTTCAACCTATATTGATCATATCTAGAAGTTCTGTTTGTT------TAAAAAAAGTTCATGTAGCAGCAGATAACTAATACAACCAGAAATAAATGAGATATTGTTTCCCCAAATT
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     1997855 166 -   2157725 tacatctttgcatTTCTGACCATTTTAGATTCAGAATTATGGATAAGGGATTTTCAACCTATATTGATTGTGTCTAGAAGTTCTGTTTGTTTCTTT-AAAAAAATGTTCATGTAGCAGCAGGTAACTACTACAACCAGAAATAAATGAGATATTGTTTCAGCAAAtt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28433918 166 -  71996105 tacgtctttgcatTTCTGACCATTTTAGATTCAGAATTATGGATAAGGGATTTTCAACCTATATTGATTGTGTCTAGAAGTTCTGTTTGTTTCTTT-AAAAAAATGTTCATGTAGCAGTAGGTAACTACTACAACCAGAAATAAATGAGATATTGTTTCAGCAAAtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2140518 166 +   2316924 tacatctttgcatTTCTGACCATTTTAGATTCAGAATTATGGATAAGGGATTTTCAACCTATATTGATTGTGTATAGAAGTTCTGTTTGTTTCTTT-AAAAAAAAGTTCATGTAGCAGCAGGTAACTCCTACAACCAGAAATAAATGAGATATTGTTTCAGCAAAtt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2006811 167 -   3067355 tacgtctttgtatTTCTGACCATTTTCGATTCAGAATTATGGATAAGGAATTTTCAACCTATATTGATTATGTCTAGAAGTTCTGTTTGTTTCTTTAAAAAAAATGTTCATGTAGCAGCAGATAACGACTACAACCAGAAATAAATGAGATACTGTTTCAGCAAAtt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171526544 166 - 171630274 tatacctttgcatATCTGACCATTTTAGATTCAGAATTATGGATAAGAGATTTTCAACCTATATTGATCATGTCTAGAAGTTCTATTTGTTTTTTT-TAAAAAATATTCATGTAGCAGCAGATGACTAATACAACCAGAAATAAATGAAATGTTGTTTGCCCAAATT
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e macFas5.chr4              29139604   0 - 170955103 C
e rheMac8.chr4              29478486   6 + 172585720 I

a score=-10214.000000
s hg38.chr6_GL000254v2_alt    289547 2 +   4827813 c-----t
s panTro5.chr6              29264712 7 + 175400573 ctttttt
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5307822 2 +   6154872 -----tt
i gorGor5.CYUI01015250v1   C 0 I 2
s nomLeu3.chr1a             74314431 2 + 122973662 -----Gt
i nomLeu3.chr1a            C 0 I 2
s cerAty1.NW_012001495v1     1998021 1 -   2157725 c------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28434084 1 -  71996105 c------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2140684 1 +   2316924 c------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2006978 1 -   3067355 c------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171526710 2 - 171630274 -----CT
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696 6 -   2996164 I
e macFas5.chr4              29139604 0 - 170955103 C
e rheMac8.chr4              29478486 6 + 172585720 I
e panPan2.chr6              29510782 127 + 173848474 I

a score=1365.000000
s hg38.chr6_GL000254v2_alt    289549 1 +   4827813 t
s panTro5.chr6              29264719 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29510909 1 + 173848474 t
i panPan2.chr6             I 127 C 0
s gorGor5.CYUI01015250v1     5307826 1 +   6154872 t
i gorGor5.CYUI01015250v1   I 2 C 0
s nomLeu3.chr1a             74314435 1 + 122973662 t
i nomLeu3.chr1a            I 2 C 0
s calJac3.chr4             171526712 1 - 171630274 T
i calJac3.chr4             C 0 I 935
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e colAng1.NW_012115566v1     2006979 0 -   3067355 C
e manLeu1.NW_012104165v1     2140685 0 +   2316924 C
e chlSab2.chr17             28434085 0 -  71996105 C
e cerAty1.NW_012001495v1     1998022 0 -   2157725 C
e macNem1.NW_012011356v1     2129696 6 -   2996164 I
e macFas5.chr4              29139604 0 - 170955103 C
e rheMac8.chr4              29478486 6 + 172585720 I

a score=2690935.000000
s hg38.chr6_GL000254v2_alt    289550 886 +   4827813 ttttttttttttttg-agatggagtcttgctctgttgcccaggctggagtgtagtggtgcaatctcggctcactgcaacctctacctcctgggttcaagccattctcctgcctcagcctccggag----tagctgggactacaggtgcccaccaccacgcccagcttactttttctatttttagtagagat-ggggtttcaccatattggccaggctggtcttgaactcctgaccttgtgatctgcccacctcaggctcccaaagtgttgggattacaggcgtgagccaccatgcccagtcACAAATTCTTGATACTATATTATGTTATtgttaccaggcaaaaggggctcactgctggatgtgctagaagctaatactatgacactggatttctaagaaaagaaaagctctttattataggttgaccaataaggagacaggaatctagctcaactgtatctccctgtgctggctttaagatagtaattttattagaaaaggtttgcgggtggattctgggattagcaggtggttggtggaaggaaaagggaggtctagaaagtcctc--aaatgcacagtta--tctccattcctcttcatgggtcccacgtgcaaattcaaagggagttagtatgaaacatgcagtggaaa-tcgggctgtgacattaacaagcttgttctgtgcaaactccatttggtcatgttggttccaactaattttggacactcttgttatctcacaaatggagggaatttcagcgtttcagcaagttatttattttcttatctgctatctggcaaactcaag-atttctgttagttattggtttcctattcttt-ggggcacaatttcagtttcaacttttcagcaagttgtttctttttttatatactat
s panTro5.chr6              29264720 883 + 175400573 ttttttttttttttg-agatggagtcttgctctgttgcccaggctggagtgtagtggtgcaatctcggctcactgcaacctccacctcctgggttcaagccattctcctgcctcagcctccggag----tagctgggactacaggtgcccaccaccacgcccagcttactttttgtattttaagtagagat-ggagtttcaccatattggccaggctggtcttgaactcctgaccttgtgatccgcccacctcaggctcccaaagtgttgggattacaggcgtgagccaccatgcccagtcACACATTCTTGATACTATA-----TTATtgttaccaggcaaaaggggctcactgctggatgtgctagaagctaatactatgacactggatttctaagaaaagaaaagctctttattataggttgaccaataaggagacaggaatctagctcaactgtatctccctgtgctggctttaagatagtaattttattagaaaaggtttgcgggtggattctgggattagcaggtggttggtggaaggaaaagggaggtctagaacgtcctc--aaatgcacagtta--tctccattcctcttcatggatcccacgtgcaaattcaaagggagttcgtatgaaacatgcagtggaaattcgggctgtgacattaacaagcttgttctgtgcaaactccatttggtcatgttggttccaaataattttggacactcttgttatctcacaaatggagggaatttcagcatttcagcaagttatttattttcttatctgctatctggcaaactcaagaatttctgttagttattggtttcctattcttt-ggggcacaatttcagtttcaacttttcagcaagttgtttctttttttatatactat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29510910 889 + 173848474 ttttttttttttttgtagatggagtcttgctctgttgcccaggctggagtgtagtggtgcaatctcggctcactgcaacctccacctcctgggttcaagccattctcctgcctcagcctccggag----tagctgggactacaggtgcccaccaccacgcccagcttactttttgtattttaagtagagat-ggagtttcaccatattggccaggctggtcttgaactcctgaccttgtgatccgcccacctcaggctcccaaagtgttgggattacaggcgtgagccaccatgcccagtcACACATTCTTGATACTATATTATGTTATtgttaccaggcaaaaggggctcactgctggatgtgctagaagctaatactatgacactggatttctaagaaaagaaaagctctttattataggttgaccaataaggagacaggaatctagctcaactgtatctccctgtgctggctttaagatagtaattttattagaaaaggtttgcgggtggattctgggattagcaggtggttggtggaaggaaaagggaggtctagaacgtcctc--aaatgcacagtta--tctccattcctcttcatggatcccacgtgcaaattcaaagggagttcgtatgaaacatgcagtggaaattcgggctgtgacattaacaagcttgttctgtgcaaactccatttggtcatgttggttccaaataattttggacactcttgttatctcacaaatggagggaatttcagcgtttcagcaagttatttattttcttatctgctatctggcaaactcaagaatttctgttagttattggtttcctattcttt-ggggcacaatttcagtttcaacttttcagcaagttgtttctttttttatatactat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5307827 888 +   6154872 ttttttttttttttg-agatggagtcttgctctgttgcccaggctggagtgtagtggtgcaatctcggctcactgcaacctccacctcctgggttcaagccattctcctgcctcagcctctggag----tagctgggactacaggtgcccaccacggcgcccagcttactttttgtattttaagtagagat-ggggtttcaccatattggccaggctggtcttgaactcctgaccttgtgatccgcccacctcaggctcccaaagtgttgggattacaggcgtgagccaccatgcccagtcACAAATTCTTGATACTATACTATGTAATtgttaccaggcaaaaggggctcactgctggatgtgctagaagctaatactatgacactggatttctaagaaaagaaaagctctttattacaggttgaccagtaaggagacaggaatctagctcaactgtatctccctgtgctggctttaagatagtaattttattagaaaaggtttgcgggtggattctgggattagcaggtggttggtggaaggaaaagggaggtctagaaagtcctc--aaatgcacagtta--tctccattcctcttcataggtcccatgtgcaaatgcaaagggagttcgtatgaaacatgcagtggaaattcgggctgtgacattaacaagcttgttctgtgcaaactccatttggtcatgttggttccaaataattttggacactcttgttatctcacaaatggagggaatttcagcgtttcagcaagttatttattttcttatctgctatctggcaaactcaagaatttctgttagttattggtttcctattcttt-ggggcacaattCTagtttcaacttttcagcaagttgtttctttttttatatactat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74314436 888 + 122973662 cttttttttttttta-agatggagtcttgctctgttgcccaggctggagtgtagtggtacgatcgtggctcactgcaacctccacctcctgggttcaagccattctcctgcctcagcctctggag----tagctgggactacaggtgcccaccaccatgcccagcttactttttgtatttttagtagagac-ggggtttcaccatattggccaggctggtcttgaactcctgaccttgtgatctccccgcctcaggatcccaaagtgttgggattacaggcgtgagccaccgtgccctgccACAAATTCTTGATACTATATTATGTTATtgttaccaggcaaaagggcctcactgctggatgtgctagaagccaatactatgacactggatttctaagaaaagaaaagctctgtattataggttgaccaataaggagacaggaatctagctcaactgtatctccctgtgctggctttaagatagtaattttattagaaaaggtttgtgggtggattctgggattagcaggtgattggtggaagaaaaagggaggtctagaaagtcctc--aaatgcacagttacctctccattcgtcttcatgggtcccacgtgcaaattaaaagggagttagtatgaaacatgcagtggaaattcaggctgtgacattaacaggcttgttctgtgcaaaccccatttggccatgttggttccaactaattttggccacttttgttatctcacaaatggaaggaatttcagcgtttcagcaagttatttattttcttatctgctatctggcaaactgaagaatt--tgttagttattggtttcctattcctt-ggggcacaatttcagttttaacttctcagcaagttgtttctttttttatatactat
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     1998022 892 -   2157725 ---tttttttttttg-agatggtgtcttgctctgttgcccaggttggaatgcagtggcatgatctcggctcactgcaacctctgcctcctgggttcaagccattctcctgcctcagcctccctagtagctagctgggactacaggtgtccaccaccacgcccagctaactttttgtatttttagtagagac-agggtttcaccatattggccaggctcatcttgaactcctgaccttgtgatccatctgcctcaggttccaaaagtgctgggattacaggcttgagccactgtgtctggccACAAATTCTTGATACTACATTATGTTTTtgctaccaggcaaaaggggctccctgctggatgtgctagaagccaatactatgacactggatttctaagaaaagaaaaacttttcattataggttgaccaataaggagacaggaatctagctcaactgtatctccctgtgctggctttaagatagtgattttattagaaaaggtttacgggtggattctggaattagcaggtgattggtggaaggaaaagggaggtctagaaagtcctcagaaatgcatagctgtctctccattcctctttgtgggtcccaggtgcaaattcaaagggagttagtatgaaacatgcagtggaaattcggg-tgtgacattaacaagcttgttctgtgcaaactccatttggccatattgcttccaattaattttggtcacttttgttatctcacaaatggagggaatttcagtgtttcagaaaattatttattttcttatctgctatctggcaaactc-agaatatctgtcagttattggtttcctattctttgggggcacaatttcagtttcaacttttcagcaagttgtttcttttcttatatgctat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28434085 894 -  71996105 --ttttttttttttg-agatggtgtcttgctctgttgcccaggttggagtgcagtggcatgatctcggctcactgcaacctctgcctcctgggttcaagccattctcctgcctcagcctccctagtagctagctgggactacaggtgtccaccaccacgcccagctaactttttgtatttttagtagagacgggggtttcaccatattggccaggctcatcttgaactcctgaccttgtgatccatctgcctcaggctcccaaagtgctgggattacaggcttgagtcactgtgtctggccACAAATTCTTGATACTATATTATGTTTTtgctaccaggcaaaaggggctcactgctggatgtgctagaagccaatactatgacactggatttctaagaaaagaaaagctttttattataggttgaccaacaaggagacaggaatctagctcaactgtatctccctgtgctggctttaagatagtgattttattagaaaaggtttacgggtggattctggaattagcaggtgattggtggaaggaaaagggaggtctagaaagtcctcagaaatgcatagttgtctctccattcctcttcatgggtcccaggtgcaaattcaaagggagttagtatgaaacatgcagtggaaatttggg-tgtgacattaacaagcttgttctgtgcaaactccatttggccatattggttccaattaattttggccacttttgttatctcacaaatggagggaatttcagtgtttcagaaagttatttattttcttatctgctatctggcaaactcaagaatttctgtcagttattggtttcctattcttt-ggggcacaatttcagtttcaacttttcagcaagttgtttcttttcttatatgctat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2140685 893 +   2316924 ---tttttttttttg-agatggtgtcttgctctgttgcccaggttggaatgcagtggcatgatctcggctcactgcaacctctgcctcctgggttcaagccattctcctgcctcagcctccctagtagctagctgggactacaggtgtccaccaccacgcccagctaactttttgtatttttagtagagac-agggtttcaccatattggccaggctcgtcttgaactcctgaccttgtgatccatatgcctcaggttctcaaagtgctgggattacagacttgagccactgtgtctggccACAAATTCTTGATACTATATTATGTTTTtgctaccaggcaaaaggggctcactgctggatgtgctagaagccaatactatgacactggatttctaagaaaagaaaaacttttcattataggttgaccaacaaggagacaggaatctagctcaactgtatctccctgtgctggctttaagatagtgattttattagaaaaggtttacgggtggattctggaattagcaggtgattggtggaaggaaaagggaggtctagaaagtcctcagaaatgcatagttgtctctccattcctctttgtgggtcccaggtgcaaattcaaagggagttcgtatgaaacatgcagtggaaattcggg-tgtgacattaacaagcttgttctgtgcaaactccatttggccatattgcttccaattaattttggccacttttgttatctcacaaatggagggaatttcagtgtttcagaaagttatttattttcttatctgctatctggcaaactcaagaatatctgtcagttattggtttcctattctttgggggcacaatttcagtttcaacttttcagcaagttgtttcttttcttatatgctat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2006979 893 -   3067355 --ttttttttttttg-agatggtgtcttgctccgttgcccaggttggagtgcagtggtgtgatctcggctcactgcaacctctgcctcctgggttcaagccattctcctgcctcagcctccctagtacctagctgggactacaggtgtccaccaccacgcccagctaactttttgtatttttagtagagat-ggggtttcaccatattggccaggctcgtcttgaactcctgaccttgtgatccatccgccacaggctcccaaagtgctgggattacaggcttgagccaatgtgtctagccACAAATTCTTGATACTATATTGTATTTTtgctaccaggcaaaaggggctcactgctggatgtgctagaagccaatactatgatacttgatttctaaggaaagaaaaaccttttattataggttgaccaacaaggagacaggaatctagctcaactgtatctccctgtgctggatttaagatagtgattttattagaaaaggtttacgggtggattctggaattagcaggtgattggtggaaggaaaagggaggtctagaaggtcctcagaaatgcatagttgtctctccattcctcttcgtgggtcccaggtgcaaattcaaagggagttagtatgaaacatgcagtggaaattcggg-tgtgacattaacaagcttgttctgtgcaaactccatttggctatattggttccaattaattttggccacttttgttatctcacaaatggagggaatttcagtgtttcagaaagtgatttattttcttatctgctatctggcaaactcaagaatttctgtcagttattggtttcctattcttt-ggggcacaatttcagtttcaactttccagcaagttgtttcttttcttatatgctat
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            102974 62185 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171526713 935 - 171630274 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e macFas5.chr4              29139604   0 - 170955103 C
e rheMac8.chr4              29478486   6 + 172585720 I

a score=109637.000000
s hg38.chr6_GL000254v2_alt    290436 40 +   4827813 cctataaactcaagaattttatcatt-aaaaaaa--ctcttta
s panTro5.chr6              29265603 41 + 175400573 cctataaactcaagaattttatcata-aaaaaaa-cctctttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29511799 40 + 173848474 cctataaactcaagaattttatcata-aaaaaaa--ctctttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5308715 39 +   6154872 cctataaactcaagaattttatcata-aaaaaa---ctctttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74315324 42 + 122973662 cctataaactcaagaattttatcatt-aaaaaaaaactctttg
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     1998914 42 -   2157725 cctataaactcaagaattttatcattaaaaaaaa-cccctttg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28434979 41 -  71996105 cctataaactcaagaattttatcatt-aaaaaaa-cccctttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2141578 41 +   2316924 cctataaactcaagaattttatcatt-aaaaaaa-cccctttg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2007872 39 -   3067355 cctataaactcaagaattttatcatt-aaaaaaa---cttttg
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH561790            165159 40 -    302817 cctactgaatcagaaccttcattttt-aataaga--tccacca
i dasNov3.JH561790         I 62185 C 0
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171526713 935 - 171630274 I
e macNem1.NW_012011356v1     2129696  6 -   2996164 I
e macFas5.chr4              29139604  0 - 170955103 C
e rheMac8.chr4              29478486  6 + 172585720 I

a score=1118683.000000
s hg38.chr6_GL000254v2_alt    290476 299 +   4827813 gggcatgatttTTTCATC-----AAACTT---AAAAAAAAAA----TCCCCAATATAACAGAGAATTTCCAGCATTTTAACCTGA--AACTGAAGACCATTA-CTGAATGCAGT-------------------------------------------------------------TTTCAATTGCCAATCTAGAAGTTTACTAA------TTCTGTGTATTG-------GATGTGCATATCCTTGTCAATCATTTTGGCCTAAGGGAGTCTTTCTTTTAATCATCTTTTCAAATAGGAAAAAGC-------ACCAAATTAAG----TGTTTTCTCAAACTTTTTCATTATAGTTATTTCATTTCTAACAaaattttagtgccacagttatattgtgtaa
s panTro5.chr6              29265644 296 + 175400573 gggcatgatttTTTCATC-----AAACTT----AAAAAAAAA----TCCCCAATATAAC--GGAATTTCCAGCATTTTAACCTGA--AACTGAAGACCATTA-TTGAATACAGT-------------------------------------------------------------TTTCAATTGCCAATCTAGAAGTTTACTAA------TTCTGTGTATTG-------GATGTGCATATCCTTGTCAGTCAGTTTGGCCTAAGGGAGTCTTTCTTTTAATCATCTTTTCAAATAGGAAAAAGC-------ACCAAATTAAG----TGTTTTCTTAAACTTTTTCATTATAGTTATTTCATTTCTAACAaaattttagtgccacagttatattgtgtaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29511839 296 + 173848474 gggcatgatttTTTCATC-----AAACTT----AAAAAAAAA----TCCCCAATATAAC--GGAATTTCCAGCATTTTAACCTGA--AACTGAAGACCATTA-TTGAATACAGT-------------------------------------------------------------TTTCAATTGCCAATCTAGAAGTTTACTAA------TTCTGTGTATTG-------GATGTGCATATCCTTGTCAGTCAGTTTGGCCTAAGGGAGTCTTTCTTTTAATCATCTTTTCAAATAGGAAAAAGC-------ACCAAATTAAG----TGTTTTCTTAAACTTTTTCATTATAGTTATTTCATTTCTAACAaaattttagtgccacagttatattgtgtaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5308754 296 +   6154872 gggcatgatttTTTCATC-----AAACTT----AAAAAAAAA----TCCCCAATATAAC--GGAATTTCCAGCATTTTAACCTGA--AACTGAAGACCATTA-TTGAATACAGT-------------------------------------------------------------TTTCAATTGCCAATCTAGAAGTTTACTAA------TTCTGTGTATTG-------GATGTGCATATCCTTGTCAGTCAGTTTGGCCTAAGGGAGTCTTTCTTTTAATCATCTTTTCAAATAGGAAAAAGC-------ACCAAATTAAG----TGTTTTCTCAAACTTTTTCATTATAGTTATTTCATTTCTAACAaaattttagtgccacagttatattgtgtaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74315366 301 + 122973662 gggcatgatttcTTCATC-----AAACTTAAAAAAAAAAAAA----TCCCCAATACAACAGGGAATTTCCAGCATTTTAACCTGA--AACTGAAGACCATCA-TTGAATGCAGG-------------------------------------------------------------TTTCAATTGCCAATCTAGAGGTTTACTGA------TTCTGTGTATTG-------GATGTGCATATCCTTGTCAATCAGTTTGGCCTAAGGGAGTCTTTCTTTTAATCAACTTTTTGAATAGGAAAAAGC--------CCCAATTAAG----TGTTTTCTCAAACTTTTTCATTATAGTTATCTCATTTCTAACAaaattttagtgccacagttatattgtgtaa
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     1998956 306 -   2157725 gggcatgatttcTTTATC-----AAACTT------TAAAAAA----TCCCCAATATAACAGGGAATTTCCAGCATTTTAACCTGA--AACTGAAGACCATCG-TTGAATGCAGG-------------------------------------------------------------TTTCAATTGCCAATCTAGAAGTTTACTAAT---TCTTCTGTGTATTGGAGCCTAGATGTGCATATCTTTGTTAATCAGTTTGGCCTAAGGGAGTCTTTGTTTTAATCATCTTTTCGAATAGGAAAAAGC-------CTCAAATTAAG----TGTTTTCTCAAACTTTTTCATTATAGCTATCTCATTTCTAACAaaattttagtgccacagttatattgtgtaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28435020 301 -  71996105 gggcatgatttcTTTATC-----AAACTT------AAAAAAA----TCCCCAATATAACAGGGAATTTCCAGCATTTTAACCTGA--AACTGAAGACCATCA-TTGAATGCAGG-------------------------------------------------------------TTTCAATTGCCAGTCTAGAAGTTTACTAAT---TCTTCTGTGTATTGGAGCCTAGATGTGCATATCCTTGTCAATCAGTTTGGCCTAAGGGAGTCTTTCTTTTAATCATCTTTTCGAATAGGAAAAAGC-------CTCAAATTAAG----TGTTTTCTGAAACTTTTTCATTATAGCTATCTCATTTCTAACAaaattttagtgccacagttatatta-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2141619 306 +   2316924 gggcatgatttcTTTATC-----AAACTT------AAAAAAA----TCCCCAGTATAACAGGGAATTTCCAGCATTTTAACCTGA--AACTGAAGACCATCA-TTGAATGCAGG-------------------------------------------------------------TTTCAATTGCCAATCTAGAAGTTTACTAAT---TCTTCTGTGTATTGGAGCCTAGATGTGCATATCTTTGTCAATCAGTTTGGCCTAAGGGAGTCTTTATTTTAATCATCTTTTCGAATAGGAAAAAGC-------CTCAAATTAAG----TGTTTTCTCAAACTTTTTCATTATAGCTATCTCATTTCTAACAaaattatagtgccacagttatattgtgtaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2007911 307 -   3067355 gagcatgatttcTTTATC-----AAACTT------AAAAAAA----TCCCCAGTATAATAGGGAATTTCCAGCGTTTTAACCTGA--AACTGAAGACCATCATTTGAATGCAGG-------------------------------------------------------------TTTCAATTGCCAATCTAGAAGTTTACTAAT---TCTTCTGTGTATTGGAGCGTAGATGTGCATATCCTTGTCAATCAGTTTGGCCTAAGGGAGTCTTTCTTTTAATCATCTTTTCGAATAGGAAAAAGC-------CTCAAATTAAG----TGTTTTCTCAAACTTTTTCATTATAGCTATCTCATTTCTAACAaaattttagtgccacagttatattgtgtaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171527648 363 - 171630274 GGGCATGATTTCTTTATC-----AAACTT----AAAAACAAA----TCCCCAATATAACAAGGAATTTCCAGCATTTTAACCTGA--AACTGAAGACCATCA-TTGAATGCAGGtttctctttttttttttctgagacggagtttcgctcttgttacccaggctgtgaatgcagATTTCAATTACCAACCTAGAACTTTATTAAT---TCTTCTATGTACTGGAGCCTAGATGTGCACATCCTTGTCAATCAGTTTGGCTTAAGAGAGTCTTTTTTAAAATCATCTTTTCAAATAGGAAAAAGC-------CCCAAAT--------TGCTTTATCAAA--TTTTCATTGTAGCGATCCCATTTCTAACAaaattttagtgccacagttatattgcataa
i calJac3.chr4             I 935 C 0
s dasNov3.JH561790            165199 322 -    302817 ----gtgattcatacacacatagaagctt----gaaaaaacactgCTCTGTAGTTTGTCAGAGTGTTTCCAGCATTTTAACCTGATTATGTGAAGG-CATCT-TTGAAACCATG-------------------------------------------------------------TTTTAGTTACCAACCTAGAAAACTATGAATGCCTCTCCCAGGACCTGGAGGTTGGATGTGC----CCTTGTCCATCAATGTAGTCCAATGGAGTCTTTCTTTTAATCATCTTTTCAAATAGGGAGAAGCACATTCTCTTATATTAAGACAATATTTTTTC--GCCTATTTTTCATCACTATTGGcctttcaatgaaattttaataccacagatacacagtgtag
i dasNov3.JH561790         C 0 I 548
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e macFas5.chr4              29139604   0 - 170955103 C
e rheMac8.chr4              29478486   6 + 172585720 I

a score=1707383.000000
s hg38.chr6_GL000254v2_alt    290775 454 +   4827813 ctgcttatgtacagaggctctttggaggaccaccaac-cattgtaataccaaagatttttg---ctacctccccttgaatcaa-ttttgcccctgtggggatgatatcatccctgatatgaaggcatATATTGAGAGAAATAAGACAAACTATTAAA-----------CCAAATTTTA--ATAGATGACAGTACTTTAAAAGAAAATTAA-TT--TAAAAATT--TAGTC---ATTTCTGGGATATGAGATAATGAGCAA---------------TTTCTTTTATTTCTCTTAT-TTT-CTAGTTTCC-ATTATGTACTTATATATACCTCTAGGGGATGTTGTAAAGATTCTATAATATTATGTATGTATTCTATAATAT---GTATGTGAAAGAAAAACTG---TATCTTTTCCTTT-GCTAACTCATAGATGTTTAAATATATTACATTTTAGGTGTTAGATGATTTATATATCTTCAGTGTTAACAC-----AAACTGAAGATATT
s panTro5.chr6              29265940 456 + 175400573 ctgcttatgtacagaggctctttggaggaccaccaac-cattgtaataccaaagattttta---ctacctccccttgaatcaa-ttttgcccgtgtgggggtgatatcatccctgatatgaaggcatATATTGAGAGAAATAAGACAAACTATTAAA-----------CCAAATTTTAACATAGATGACAGTACTTTAAAAGAAAATTAA-TT--AAAAAATT--TAGTC---ATTTCTGGGATATGAGATAATGAGCAA---------------TTTCTTTTATTTCTCTTAT-TTT-CTAGTTTCC-ATTATATACTTATATATACCTCTAGGGGATGTTGTAAAGATTCTATAATATTATGTATGTATTCTATAATAT---GTATGTGAAAGAAAAACTG---TATCTTTTCCTTT-GCTAACTCACAGATGTTTAAATATATTAAATTTTAGGTGTTAGATGATTTATATATCTTCAGTGTTAACAC-----AAACTGAAGATATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29512135 456 + 173848474 ctgcttatgtacagaggctctttggaggaccaccaac-cattgtaataccaaagattttta---ctacctccccttgaatcaa-ttttgcccgtgtgggggtgatatcatccctgatatgaaggcatATATTGAGAGAAATAAGACAAACTATTAAA-----------CCAAATTTTAACATAGATGACAGTACTTTAAAAGAAAATTAA-TT--AAAAAATT--TAGTC---ATTTCTGGGATATGAGATAATGAGCAA---------------TTTCTTTTATTTCTCTTAT-TTT-CTAGTTTCC-ATTATATACTTATATATACCTCTAGGGGATGTTGTAAAGATTCTATAATATTATGTATGTATTCTATAATAT---GTATGTGAAAGAGAAACTG---TATCTTTTCCTTT-GCTAACTCACAGATGTTTAAATATATTAAATTTTAGGTGTTAGATGATTTATATATCTTCAGTGTTAACAC-----AAACTGAAGATATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5309050 453 +   6154872 ctgcttatgtacagaggctctttggaggaccaccaac-cattgtaataccaaagattttta---ctacctccccttgaatcaa-ttttgcccctgtgggggtgatatcatccctgatatgaaggcatATATTGAGAGAAAGAAGACAAACTATTAAA-----------CCAAATTTTAACATAGATGACAGTACTTTAAAAGAAAATTAA-TT--TAAAAATT--TAGTC---ATTTCTGGGATATGAGATAATGAGCAA---------------TTTCTTTTATTTCTCTTAT-TTT-CTAGTCTCC-ATTATATACTTATATATACCTCTAGGGGATGTTGTAAAGATTCTATAATATTATGTATGTATTCTATAATGT---GTATGTGAAAGAAAAATTG---TATCTTTTCCTTT-GCTAACTCATAGATGTTTAAATATATTACATTTTAGGTGTTA---GATTTATATATCTTCAGTGTTAACAT-----AAACTGAAGATATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74315667 456 + 122973662 ctgcttatgtatagaggctctttggaggaccaccaac-cattgtaataccaaagatttttg---ctacctccgcttgaatcag-ttttgcccctgtgggggtgatatcatccttgatatgaaggcatACATCGAGAGAAATAAGAGAAAATATTAAA-----------CCAAATTTTAACATAGATGACAGTACTTTAAAAGAAAATTAA-TT--TAAAAATT--TAGTC---ATTTCTGGGATATGAGATAATGAGCAA---------------TTTCTTTTATTTCTCTTAT-TTT-CTAGTTTCC-ATTATATACTTATATATACCTCTAGGGGATGTTATAAAGATTCTATAATATTATGTATGTATTCTATAATAT---GTATGTGAAAGAAGAACTA---CATCTTTTCTTTT-GCTAAGTTATAGATGTTTACATATATTAAATTTTAGGTATTAGATGATTTATATATCTTCAGTGTTAACAC-----AAACTGAATATATT
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     1999262 453 -   2157725 ctgcttatgtacagaggctctttggaggaccaccaac-cattgtaatactaaagatttttg---ctacctcccctggaatcaa-ttttgcccgtgtgggggtgataccatccctgatatgaaggtatACACTGAGAGAAATAAGACAAAATATTAAA-----------CCAAATTTTAACATAGGTGACAATACTTTAAAAGAAAATTAG-TTAAAAAAAATG--TAGCCATTATTTCTGGGATACGAGATAATGAGCAA---------------------TTATTTCTTTTAT-TTC-CTAGTTTCC-ATTATATACTTATATATACCTATAGGGGATGTTGT--AGATTCTATAATATTATGTATGTATTCTATAATTTTAAGTATGTGAAAGAAAAAC-----TATCTTTTCCTTT-GCCAAGTCATAGGTCTTTAAATATATTAAATTTTAGG-GTTAGATGATTTATATATCTTTAGTGTTAACAC-----AAACTGAATATATT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28435321 457 -  71996105 -tgcttatgtgcagaggctctttggaggaccaccaac-cattgtaatactaaagatttttg---ctacttcccctggaatcaa-ttttgcccctgtgggggtgatatcatccctgatatgaaggtatATACTGAGAGAAATAAGACAAAATATTAAA-----------CCAAATTTTAACATAGGTGACAATACTTTAAAAGAAAATTAGTTTCAAAAAAATT--TAGTCATTATTTCCGGGATACGAGATAATGAGCAA---------------------TTATTTCTTTTAT-TTC-CTAGTTTCC-ATTATATACTTATATATACCTATAGGGGATGTTGTAAAGATTCTATAATATTATGTATGTATTCTATAATTTTAAGTATGTGAAAGAAAAACTG---TATCTTTTCCTTT-GCTAAATCGTAGGTCTTTAAATATATTAAATTTTAGG-GTTAGATGATTTATATATCTTTAATGTTAACAC-----AAACTGAATATATT
i chlSab2.chr17            C 0 I 616
s manLeu1.NW_012104165v1     2141925 455 +   2316924 ctgcttatgtacagaggctctttggagaaccaccaac-cattgtaatactaaagatttttg---ctacctcccctggaatcaa-ttttgcccgtgtgggggtgttaccatccctgatatgaaggtatACACTGAGAGAAATAAGACGAAATATTAAA-----------CCAAATTTTAACATAGGTGACAATACTTTAAAAGAAAATTAG-TTAAAAAAAATG--TAGTCATTATTTCTGGGATACGAGATAATGAGCAA---------------------TTATTTCTTTTAT-TTC-CTAGTTTCC-ATTATATACTTATATATACCTATAGGGGATGTTGt--agattctataatattatgtatatattctataattttaAGTATGTGAAAGAAAAACTG---TATCTTTTCCTTT-GCCAAGTCATAGGTCTTTAAATATATTAAATTTTAGG-GTTAGATGATTTATATATCTTTAGTGTTAACAC-----AAACTGAATATATT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2008218 457 -   3067355 ctgcttatgtacggaggctcttgggaggaccaccaac-cattggaatactgaagatttttg---ctccctcccctggaatcaa-ttttgcccctgtgggggtgatatcatccctgatatgaaggtatACACTGAGAGAAATAAGACAAAATATTAAA-----------CCAAATTTTAACATAGGTGACAATACTTTAAAAGAAAATTAG-TTAAAAAAAATT--TAGTCATTATTTCTGGGATACGAGATAATGAGCAA---------------------TTATTTCTTTTAT-TTC-CTAGTTTCC-ATTATATACTTATATATACCTATAGGGGATGTTGTAAAGATTCTATAATATTATGTATGTATTCTATAATTTTAAGTATGTGAAAGAAAAACTG---TATCTTTTCCTTT-GCTAAGCTGTAGGTCTTTAAATATATTAAATTTTAGG-GTTAGATGATTTATATATCTTTAGTGTTAACAC-----AAACTGAATATATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171528011 451 - 171630274 ctgcttatgtacagaggctctttggaggaccaccaac-cattgtaatgcctaggatttttg---ctacctcacctggaatcag-ttttgcccctgtggaggtgatatcatccctgatatgaagacatACATTGAGAGAAATAAGACAAGATATCAAA-----------CCAAATTTTAGCACAGATGACAATACtttaaaagaaaattaa-tt-aaaaaaatt--taGTCATTATTTCTAGGATATGAGATAATTAGCAA---------------------TTATTTCTCTTATATTT-CTAGTTTCC-ATTATATACTTACATATACCTCTAGGGGATGTTGTATAGATTCTATCATATTATTTATGTATTCTGTAATAT----TATGTGAAAGAAAAACTA---TATCTTTTCCTTTCCCTAATTCATAGGTGTT----TATACTAAATTTTAGATGTTAGATGATTTATGTATCTTCAGTGTTAACAG-----AAACTGAAGATATT
i calJac3.chr4             C 0 C 0
s dasNov3.JH561790            166069 456 -    302817 ctgtttatgtactgtggctctctagaggggcaccagtacatcgtaacagctaatattttttgccttcccccaccaggagacaatttttgctcccttgggcatgacagcacccctcttgagaaggcatgCATTGAGAGAAATAAAGCAGG-TACTAAACTGAGCATGTCCCAAACTTTAATATAGATATGGATAAATTTAAAAGAAACTAA-TT--AAAAAGTTAGCAGTCATTAGCTCTGGGCTATGAGATCATGAGCTTTTTTCTTCATTTGTTTTTCTTTTATTTCTCCTGC-TTTAATGGTTTCCAAATATGTACTTATATCCACTGTCAATAGATATTGTGAAGATCCTATAAGATTAT---------------------ACGCGTAAAAGGAAAACTATATTATCTTTCCATTC-CCCA----------------------TAAACCTCAGTTGTTTCACGTTTCACACATTTGAA-----AACACTCAAAAAACTGAAGTCGTT
i dasNov3.JH561790         I 548 C 0
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e macFas5.chr4              29139604   0 - 170955103 C
e rheMac8.chr4              29478486   6 + 172585720 I

a score=11916.000000
s hg38.chr6_GL000254v2_alt    291229 3 +   4827813 GCT
s panTro5.chr6              29266396 3 + 175400573 GCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29512591 3 + 173848474 GCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5309503 3 +   6154872 GCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74316123 3 + 122973662 GCT
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     1999715 3 -   2157725 GCT
i cerAty1.NW_012001495v1   C 0 I 616
s manLeu1.NW_012104165v1     2142380 3 +   2316924 GCT
i manLeu1.NW_012104165v1   C 0 I 605
s colAng1.NW_012115566v1     2008675 3 -   3067355 GTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171528462 3 - 171630274 GCT
i calJac3.chr4             C 0 C 0
s dasNov3.JH561790            166525 3 -    302817 GCT
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e chlSab2.chr17             28435778 616 -  71996105 I
e macNem1.NW_012011356v1     2129696 6 -   2996164 I
e macFas5.chr4              29139604 0 - 170955103 C
e rheMac8.chr4              29478486 6 + 172585720 I

a score=6012.000000
s hg38.chr6_GL000254v2_alt    291232 4 +   4827813 CTAA
s panTro5.chr6              29266399 4 + 175400573 CTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29512594 4 + 173848474 CTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5309506 4 +   6154872 CTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74316126 4 + 122973662 CTAG
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1     2008678 3 -   3067355 -TAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171528465 4 - 171630274 CTAA
i calJac3.chr4             C 0 C 0
s dasNov3.JH561790            166528 4 -    302817 CCAG
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e manLeu1.NW_012104165v1     2142383 605 +   2316924 I
e chlSab2.chr17             28435778 616 -  71996105 I
e cerAty1.NW_012001495v1     1999718 616 -   2157725 I
e macNem1.NW_012011356v1     2129696 6 -   2996164 I
e macFas5.chr4              29139604 0 - 170955103 C
e rheMac8.chr4              29478486 6 + 172585720 I

a score=22159.000000
s hg38.chr6_GL000254v2_alt    291236 8 +   4827813 TATTCATC
s panTro5.chr6              29266403 8 + 175400573 TATTCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29512598 8 + 173848474 TATTCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5309510 8 +   6154872 TATTCATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74316130 5 + 122973662 TA---GTC
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2000334 8 -   2157725 TATTCATT
i cerAty1.NW_012001495v1   I 616 C 0
s chlSab2.chr17             28436394 8 -  71996105 tattcatt
i chlSab2.chr17            I 616 C 0
s colAng1.NW_012115566v1     2008681 8 -   3067355 TATTCATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171528469 8 - 171630274 TATTCATT
i calJac3.chr4             C 0 C 0
s dasNov3.JH561790            166532 8 -    302817 TATTCATT
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e manLeu1.NW_012104165v1     2142383 605 +   2316924 I
e macNem1.NW_012011356v1     2129696 6 -   2996164 I
e macFas5.chr4              29139604 0 - 170955103 C
e rheMac8.chr4              29478486 6 + 172585720 I

a score=308578.000000
s hg38.chr6_GL000254v2_alt    291244 73 +   4827813 ACCCAATGAGAATTTGTGATATTCTGCAGATTTGGTAACATTTTCATGGAGATTTAATAAAAAACATTGACAT----
s panTro5.chr6              29266411 73 + 175400573 ACCCAATGAGAATTTGTGATATTCTGCAGATTTGGTAACATTTTCATGGAGATTTAATAAAAAACATTGACAT----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29512606 73 + 173848474 ACCCAATGAGAATTTGTGATATTCTGCAGATTTGGTAACATTTTCATGGAGATTTAATAAAAAACATTGACAT----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5309518 73 +   6154872 ACCCAATGAGAATTTGTGATATTCTGCAGATTTGGTAACATTTTCACGGAGATTTAATAAAAAACATTGACAT----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74316135 71 + 122973662 ACCCAATGAGAATTTGTGATATTCTGCAAATTTGATAACATTTTCATGGAGATTTAATAAAAAACATTG--AT----
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2000342 73 -   2157725 ACCCAATGAGAATTTGTGATATTCTGTAGATTTGATAACATTTTCATGGAGATTTAATTAAAAGCATTGACAT----
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28436402 73 -  71996105 aCCCAATGAGAATTTGTGATATTCTGTAGATCTGATAACATTTTCATAGAGATTTAATTAAAAGCATTGACAT----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2142988 73 +   2316924 ACCCAATGAGAATTTGTGATATTCTGTAGATTTGATAACATTTTCATGGAGATTTAATTAAAAGCATTGACAT----
i manLeu1.NW_012104165v1   I 605 C 0
s colAng1.NW_012115566v1     2008689 73 -   3067355 ACCCAATGAGAATTTGTGATATTCTGCAGATTTGATAACATTTTCATGGAGATTTAATTAAAAGCATTGACAT----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171528477 72 - 171630274 ACCCAGTGAG-ATTTGTGATATTATGCAGATTTGGTAACATTTTCATGGAGATTTAATAAAAAACATTGACAT----
i calJac3.chr4             C 0 I 306
s dasNov3.JH561790            166540 77 -    302817 ATCCAATGAACATTTGCCATATTCTACAGAATTGATCACATTTTCATGCAGATTTCATTAAAAACATCCATGCAATT
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696  6 -   2996164 I
e macFas5.chr4              29139604  0 - 170955103 C
e rheMac8.chr4              29478486  6 + 172585720 I

a score=2030082.000000
s hg38.chr6_GL000254v2_alt    291317 514 +   4827813 attcattctacagacatttattggctatgtaattcatgtcagaaactgatt----------cgacacagcaaaat--cacgtgaataaga-aggt-ctatattgttgaaaagcttaccaatgcatcttcttcaaacac--acatacaaac----aactaaataaaaatgggataatgccct-atacttatatggtcagggttttcaaggactataga-ccatagactgatgagattcataaatacttttcagttgagacaagatttcagcagggtat-gaaggttgaatagaagGTTTTTAAGTGATAAATGCCTAGCAAGA----TTTAGGATCACTCATTTTTAACAAAGGAAAATTGATACTCTTTTTTAGTGGCCACAATTTTATCATTCTATACTTTTGTCTTTCTTCCATAGTCCTTATGACACCATGAAGTTTACAGTGTCTTCATGCTTTCCTTATC--CTGATTTCACTGTCCTCTCTCATATTTTTTTATGTTTACCAAGGTATGTACAACTGACAATTTTAGAGTCATCTGC
s panTro5.chr6              29266484 514 + 175400573 ATTCATTCTACAGACATTTATTGGCTATGTAATTCATGTCAGAAACTGATT----------CGACACAGCAAAAT--CACGTGAATAAGA-AGGT-CTATATTGTTGAAAAGCTTACCAATGCATCTTCTTCAAACAC--ACATACAAAC----AACTAAATAAAAATGGGATAATGCCAT-ATATTTATATGGTCAGGGTTTTCAAGGACTATAGA-CCATAGACTGACGAGATTTATAAATACTTTTCAGTTGAGACAAGATTTCAGCAGGGTAT-GAAGGTTGAATAGAAGGTTTTTAAGTGATAAATGCCTAGCAAGA----TTTAGGATCACTCATTTTTAACAAAGGAAAATTGATACTCTTTTTTAGTGGCCACAATTTTATCATTCTATACTTTTGTCTTTCTTCCATAGTCCTTATGACACCATGAAGTTTACAGTGTCTTAATGCTTTCCTCATC--CTGATTTCACTGTCCTCTCTCATATTTTTTTATGTTTACCAAGGTATGTACAACTGACAATTTTAGAGTCTTCTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29512679 514 + 173848474 attcattctacagacatttattggctatgtaattcatgtcagaaactgatt----------cgacacagcaaaat--cacgtgaataaga-aggt-ctatattgttgaaaagcttaccaatgcatcttcttcaaacac--acatacaaac----aactaaataaaaatgggataatgccat-atatttatatggtcagggttttcaaggactataga-ccatagactgacgagatttataaatacttttcagttgagacaagatttcagcagggtat-gaaggttgaatagaagGTTTTTAAGTGATAAATGCCTAGCAAGA----TTTAGGATCACTCATTTTTAACAAAGGAAAATTGATACTCTTTTTTAGTGGCCACAATTTTATCATTCTATACTTTTGTCTTTCTTCTATAGTCCTTATGACACCATGAAGTTTACAGTGTCTTAATGCTTTCCTCATC--CTGATTTCACTGTCCTCTCTCATATTTTTTTATGTTTACCAAGGTATGTACAACTGACAATTTTAGAGTCTTCTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5309591 514 +   6154872 attcattctacagacatttattggctatgtaattcatgtcagaaactgatt----------cgacacagcaaaat--cacatgaataaga-aggt-ctatattgttgaaaagcttaccaatgcatcttcttcaaacac--acatacaaac----aactaaataaaaatgggataatgccat-atacttatatggtcagggttttcaaggactataga-ccacagactgacgagatttataaatacttttcagttgagacaagatttcagcagggtat-gaaggttgaatagaagGTTTTTAAGTGATAAATGCCTAGCAAGA----TTTAGGATCACTCATTTTTAACAAAGGAAAATTGATACTCTTTTTTAGTGGCCACAATTTTATCATTCTATACTTTTGTCTTTCTTCCATAGTCCTTATGACACCATGAAGTTTACAGTGTCTTCATGCTTTCCTTATC--CTGATTTCACTGTCCTCTCTCATATTTTTTTATGTTTACCAAGGTATGTACAACTGACAATTTTAGAGTCATCTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74316206 505 + 122973662 attcattctacagacatttattggctatgtaattcatgtcagaaactgatt----------agacacagcataat--cacatgaataaga-aggt-ttatattgttgaaaagcttaccaatgcatcttcttcaaacacatacaaacaaat----aactaaataaaaatgggataatgccat-atacttacatggtcagggttttcaaggactataga-ctatagact---gagatttataaatacttctcagttgagacaagatttcagcagggtatagaaggttgaatagaagGTTTTTAAGTGATAAATGCCTAGCAAGA----TTTAGGATCACTCATTTTTAACAAAGGAAAA-TGATACCCTTTTTCAGTGGCCACAGTTT--TCATTCTATACTTTTG----TCTTCTACAGTCCTTATGACACCATGAAGTTTACAGTGTCTTCATGCTTTCCTTATC--CTGATTTCACTGTCTTCTCTCATATTTTTTTATGTTTACCAAGGTATGTACAACTGACAATTTT--AGTCACCTGC
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2000415 520 -   2157725 AATCATTCTATAGACATTTATTGGCTATGTAATTCATGTCAGAAACTGATT----------AGACACAGCAAAATCACACATGAATAAGA-AGGT-CTATATTGTTGAAAAGCTTACTAATGCATCTTCTTCAAACAG--ACATACAAAC--ATAACGAAGTAAAAATGGGATAATGCCAT-ATACTTACATGGTCAGAGGTTTTAGGGACTATAGG-CCATAGACCGATGAGATTTATAAATACTTTTCAGTTGAGATACGATTTCAGCAGGGTATAGAAGGTTGAATAGAAGGTTTTTAAGTGATAAATGCCTAGAAAAA----TTTAGGATCACTCATTTTTAACAAAGGGAAATTGATACTCTTTTTCAGTGACCACAATTTTATCATTCTATACTTTTGTCTTTCTTCCATAGTTCTTATGACACCATAAAGTTTACAGTGTCTTCATGCTTTCCTTAGCCTCTGATTTTTCTGTCCTCCCTCATA-TTTTTTATGTTTACCAAGGTATGTACAAGTGACAATTTTAGAGTCACTTGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28436475 522 -  71996105 AATCATTCTATAGACATTTATTGGCTATGCAATTCATGTCAGAAACTGATT----------AGACACAGCAAAATCACACATGAATAAGA-AGGT-CTATATTGTTGAAAAGCTTACTAATGCATCTTCTTCAAACAG--ACATACAAACAAATAACGAAGTAAAAATGGGATAATGCCAT-ATACTTATATGGTCAGAGGTTTTAGGGACTATAGG-CCATAGACCGATGAGATTTATAAATACTTTTCAGTTGAGATACGATTTTAGCAGGGTATAGAAGGTTGAATAGAAGGTTTTTAAGTGATAAATGCCTAGAAAGA----TTTAGGATCACTCATTTTTAACAAAGGGAAATTGATACTCTTTTTCAGTGGCCACAATTTTATCATTCTATACTTTTGTCTTTCTTCCATAGTTCTTATGACACCATAAAGTTTACAGTGTCTTCATGCTTTCCTTAGCCTCTGATTTTTCTGTCCTCCCTCATA-TTTTTTATGTTTACCAAGGTATGTACAAGTGACAATTTTAGAGTCACTTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2143061 510 +   2316924 AAtcattctatagacatttattggctatgtaattcatgtcagaaactgatt----------agacacagcaaaatcacacatgaataaga-aggt-ctatactgttgaaaagcttactaatgcatcttcttcaaacag--acatacaaacaaataatgaagtaaaaatgggataatgccat-atacttatatggtcagaggttttagggactatagg-ccatagactgatgagatttataaatacttttcagttgagatatgatttcagcagggtatagaaggttgaatagaagGTTTTTAAGTGATAAATGCCTAGAAAGA----TTTAGGATCACTCATTTTTAACAAAGGGAAATTGATACTCTTTTTTAGTGGCCACAATTTTATCATTCTGTACTTTTGTCTTTCTGCCATAGTTCTTATGACACCATAAAGTTTACAGTGTCTTCATGCTTTCCTTAGCCTCTGATTTTTCTGTCCTCCCTCATA-TTTTTTATGTTTACCAAGGT------------CAATTTTAGAGTCACTTGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2008762 519 -   3067355 AATCATTCTATAGACATTTATTGGCTATGTAATTCATGTCAGAAACTGATT----------AGACACAGCAAAATCACACATGAATAAGA-AGGT-CTATATTGTTGAAAAGCTTACTAATGCATCTTCTTCAAACAG--ACATATAAACAAATAATAAAATAAAAATGGG---ATGCCAT-ATACTTACATGGTCAGAGTTTTTAGGGACTATAGG-CCATAGACCGATGAGATTTATAAATACTTTTCAGTTGAGATAAGATTTCAGCAGCATATAGAAGGTTGAATAGAAGGTTTTTAAGTGATAAATGCCTAGAAAGA----TTTAGGATCACTCATTTTTAACAAAGGAAAATTGATACTCTTTTTCAGTGGCCACAATTTTATCATTCTATACTTTTGTCTTTCTTCCATAGTTCTTATGACACCATAAAGTTTACAGTGTCTTCATGCTTTCCTTAGCCTCTGATTTCGCTGTCCTCCCTCATA-TTTTTTATGTTTACCAAGGTATGTACAACTGACAATTTTAGAGTCACTTGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171528855 516 - 171630274 aatcattctacaaacatttattgtctatgtaattcatgtcagaagctgatt----------agacacagaaaaat--cacatgta-aata-aggt-ctatattgttgaaaagcttaccagtttgtcttctttaaatac--acatacaaacaaataactaaataaaaatgggataatgccat-atacttatatggtcagtgttttcagggaatataga-ccatagactgatcagatttataaatacttttcagatgagataagatttcaacagggtatagaaggtttattagaagGTTTTTAAGTGATAAATGCCTAGCAAAA----TTTAGGATCATCAATTTTTAACAAAGGAAAATT-ATATTTCTTTTTAGTGTCCACAATTTTATCATTCTGTACTTTT-TTTTTCTTCCATAGTCCTTATGACA-CATGAAGTTTATAGTGTCTTTGTGCTTTCCTTATCCTCTGATTTCGCTGTCCTATCTCATA-TTTTTTACTTTTACCAAGGTATGTACAACTGACAATGTCAAAGTCATTTGC
i calJac3.chr4             I 306 C 0
s dasNov3.JH561790            166617 519 -    302817 AATCTTTCCACAGACATTTATTGAATATGTAATTCATGTCAGAAATTTATTTAAACACTGGAAACATGGGGAAATCACATATGAATAAGATAGGTACCATGTTGTTGAACAGCCCACCAATGTCTTTTTCCCAAAGAC--A-ATGCCAAC----AATAAA--CAAAATGGGACAGGATCATAATACTGATATTATCAGACTTTGGAGGGAATTCAGAGGGATGGATTGATGAGATTTAGAAGCACTTTTCAGATAAGGTAAGATTTCAACTGGGTCTACAATATTGAGTAGGAGGGTTTGAAGTGATGAATGTCCACCAAAAAATGTCAAATGTCAC------------AAGAAAACTTGATACTTCTTTCCAATGGGCCCAATTTCACCTTTCTATACTTTTTTCCTTCTCCTGTAGTCCTTACAACACCATAAAGTTTATA--GTTTTTATGCTTTCTCTATCCTCTGAAACCATTATCCTCTCTCAGA-TTCTTCATTTTTACCGAGAATTAAATAACTGACAATTTTAAAGTTACCTGC
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e macFas5.chr4              29139604   0 - 170955103 C
e rheMac8.chr4              29478486   6 + 172585720 I

a score=380221.000000
s hg38.chr6_GL000254v2_alt    291831 124 +   4827813 AAagaaaagataactattaggtactgggc-ttaacacctgggtgatgcaataagatgtataataaccccccatgacacgtgtttatgt--------aaccttcacatgtacccccaaacct--aaaat-aaaagta
s panTro5.chr6              29266998 124 + 175400573 AAagaaaagataactattaggtactgggc-ttaacacctgggtgatgcaataagatgtataataaccccccatgacacgtgtttatgt--------aaccttcacatgtacccccaaacct--aaaat-aaaagta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29513193 125 + 173848474 AAagaaaagataactattaggtactgggctttaacacctgggtgatgcaataagatatataataaccccccatgacacgtgtttatgt--------aaccttcacatgtacccccaaacct--aaaat-aaaagta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5310105 124 +   6154872 AAagaaaagataactattaggtactgggc-ttaacatctgggtgatgcaataagatgtataataaccccccatgacacgtgtttatgt--------aaccttcacatgtacccccaaacct--aaaat-aaaagta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74316711 126 + 122973662 AAagaaaagataactattaggtactgggc-ttaacacctgggtgatgcaataagatgtacaataaccccccatgacacgtgtttatgt--------aacattcacatatacccccaaatgtaaaaaaa-aaAAGTA
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2000935 124 -   2157725 AAagaaaatataactattgggtactgggc-ttaatacctgagcgatgcagtaagatgtacaataaccccctatgacacgtgtttatgt--------atgtaacaaatcttcacctaaaata--aaagt-aaaaaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28436997 124 -  71996105 AAagaaaatataactattgggtactgggc-ttaatacctgagcgatgcagtaagatgtacaataaccccccatgacacgtgtttatgt--------atgtaacaaatcttcacctaaaata--aaagt-aaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2143571 124 +   2316924 AAagaaaatataactattgggtactgggc-ttaatacgtgagcgatgcagtaagatgtacaataaccccccatgacacgtgtttatgt--------atgtaacaaatcttcacctaaaata--aaagt-aaaaaaa
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2009281 125 -   3067355 AAagaaaatataactattgggtactgggc-ttaatatctgagcgatgcagtaagatgtacaataaccccccatgacacgtgtttatgt--------atgtaacaaaccttcacctaaaata--aaagtaaaaaaaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171529371 132 - 171630274 AAagaaaagataactgttaggtactgggc-ttaattcataggtgatgcaataatatatacaacaagccctcatgacatgtgtttatggatgtaacaaaccttcacatatacccgcaaatct--aaaat-aaaagta
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            167136   0 -    302817 C
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e macFas5.chr4              29139604   0 - 170955103 C
e rheMac8.chr4              29478486   6 + 172585720 I

a score=1495456.000000
s hg38.chr6_GL000254v2_alt    291955 371 +   4827813 a-----aaGAGGAATCAAAACCTTGAAATAAAGGTATGATGTTCTTGCTGTGGAAATTTAGAAGCCACAGGGTTTAAGGATTGTAGAGAC---ATCATAAGCCC-TATTACTCCCATCTTCCTACTCAATTACTTCATGTAAGCTGTGGCTTACTCTGTCTTTGAAATGACATAGCAAGGGCACTATAGATATGGGGAATCTTTCACTTGCAGAGAGGATTTTCAATCTCTGAAATGGCTGATTTGCAGAGAAGTGGAGTCGTTTATTCTCTAGCACAGGGATTTCCAGATTTTGAATGTATTTACCagt-----------aaaacaaagtaaagcaaagtaaaAACATAAGCTTGCTAAATTT-TCTTTTGTCATTTAAGAGCACCAAGCT
s panTro5.chr6              29267122 379 + 175400573 a-----aaGAGGAATCaaaaccttgaaataaaggtatgatgttcgtgctgtggaaatttagaagccacagggtttaaggattgtagaga------cataagccc-tattactcccatcttcctactcaattacttcatgtaggctgtggcttactctgtctTTGAAATGACATAGCAAGGGCACTGTAGATGTGGGGAATCTTTCACTTGCAGAGAGGATTTTCCATCTCTGAAATGGCTGATTTGCAGAGAAGTGGAGTCGTTTATTCTCTAGCACAGGGATTTCCAGATTTTGAATGTATTTACCagtaaaacaaagtgaaaacaaagtaaagcaaagtaaaaACATATGCTTGCTAAATTT-TCTTTTGTCATTTAAGAGCACCAAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29513318 379 + 173848474 a-----aaGAGGAATCaaaaccttgaaataaaggtatgatgttcgtgctgtggaaatttagaagccacagggtttaaggattgtagaga------cataagccc-tattactcccatcttcctactcaattacttcatgtaggctgtggcttactctgtctTTGAAATGACATAGCAAGGGCACTGTAGATGTGGGGAATCTTTCACTTGCAGAGAGGATTTTCCATCTCTGAAATGGCTGATTTGCAGAGAAGTGGAGTCGTTTATTCTCTAGCACAGGGATTTCCAGATTTTGAATGTATTTACCagtaaaacaaagtgaaaacaaagtaaagcaaagtaaaaACATATGCTTGCTAAATTT-TCTTTTGTCATTTAAGAGCACCAAGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5310229 382 +   6154872 a-----aaGAGGAATCAAAACCTTGAAATAAAGGTATGATGTTCTTGCTCTGGAAATTTAGAAGCCACAGGGTTTAAGGATTGTAGAGAC---ATCATAAGCCC-TATTACTCCCATCTTCCTACTCAATTACTTCATGTAGGCTGTGGCTTACTCTGTCTTTGAAATGACATAGCAAGGGCACTGTAGATGTGGGGAATCTTTCACTTGCAGAGAGGATTTTCAATCTCTGAAATGGCTGATTTGCAGAGAAGTGGAGTCGTTTATTCTCTAGCACAAGGATTTCCAGATTTTGAATGTATTTACCagtaaaacaaagtgaaaacaaagtaaagcaaagtaaaaACATAAGCTTGCTAAATTT-TCTTTTGTCATTTAAGAGCACCAAGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74316837 371 + 122973662 A-----AAGAGGAATCAAAACCTTGAAATAAAGGTATGATGTTCTTGCTGTGCAAATTTAGAAGCCACAAGGTTTAAGGATTATAGAGAC---ATCATAAGCCC-TATTACTCCCATCTTCCTACTGAATTACTTCGTGTACGCTGTGGCTTACTCTGTCTTTGAAATGACATAGCAAGGGTACTGTAGATGTGGGGAATCTTTCACCTGCAGAGAGGATTTTCAATCTCTGAAATGGCTGATTTGCAGAGAAGTGGAGTCGTTTATTCTCTAGCACAGGGATTTCCAAGTTTTGAATGTATTTACCagt-----------aaaacaaagtaaagcaaagtaaaAACATAAGCTTGCTAAATTT-TCTTTGGTCATTTAAGAATACCAAGCT
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2001059 383 -   2157725 aaG---AAGAGGAATCAAAACCTTGAAATAAAGGTATGATGTTCTTGCTGTGGAAATTTAGAAGCCACAGGGTTTAAGGATTGTAGAGAG---ATCCTAAGCCCTTATTACTCCCATCCTCTTACTCAATTACTTCATGTAGGCTGTGACTTA--CTGTCTTTGAAATAACATAGCAAGGGCACTGTAGATGTGAGGAATCTTTCACTTGCAGAGAGGATTTTCAATCTCTGAAATGGCTGATTTGCAGAGAAGTGGAGTCATTTATTCTCTAGCATAGCGATTTCCAAATTTTGAATTTATTTACCagtaaaacaaagtaaaaacaaagtaaagcaaagtaaaagcaTAAGCTTGCTAAATTT-TCTTTTGTCATTTAAGAGCATCAGGCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28437121 383 -  71996105 aaG---AAGAGGAATCAAAACCTTGAAATAAAGGTATGATGTTCTTGCTGTGGAAATTTAGAAGCCACAGGGTTTAAGGATTGTAGAGAG---ATCCTAAGCCCTTATTACTCCCATCCTCTTACTCAATTACTTCATGTAGGCTGTGACTTA--CTGTCTTTGAAATAGCATAGCAAGGGCACTGTAGATGTGAGGAATCTTTCACTTGCAGAGAGGATTTTCAATCTCTGAAATGGCTGATTTGCAAAGAAGTGGAGTCATTTATTCTCTAGCATAGCGATTTCCAAATTTTGAATTTATTTACCagtaaaacaaagtaaaaacaaagtaaagcaaagtaaaagcaTAAGCTTGCTAAATTT-TCTTTTGTCATTTAAGAGCATCAGGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2143695 383 +   2316924 aaG---AAGAGGAATCAAAACCTTGAAATAAAGGTATGATGTTCTTGCTGTGGAAATTTAGAAGCCACAGGGTTTAAGGATTGTAGAGAG---ATCCTAAGCCCTTATTACTCCCATCCTCTTACTCAATTACTTCATGTAGGCTGTGACTTA--CTGTCTTTGAAATAACATAGTAAGGGCACTGTAGATGTGAGGAATCTTTCACTTGCAGAGAGGATTTTCAATCTCTGAAATGGCTGATTTGCAGAGAAGTGGAGTCATTTATTCTCTAGCATAGCGATTTCCAAATTTTGTATTTATTTACCagtaaaacaaagtaaaaacaaagtaaagcaaagtaaaagcaTAAGCTTGCTAAATTT-TCTTTTGTCATTTAAGAGCATCAGGCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2009406 383 -   3067355 aaG---AAGAGGAATCAAAACCTTGAAATAAAGGTATGATGTTCTTGCTGTGGAAATTTAGAAGCCACAGGGTTTAAGGATTGTAGAGAG---ATCCTAAGCCCTTATTACTCCCATCCTCCTACTCAATTACTTCATGTAGGCTGTGACTTA--CTGTCTTTGAAATAACATAGCAAGGACACTGTAGATGTGAGGAATTTTTCACTTGCAGAGAGGATTTTCAATCTCTGAAATGGCTGATTTGCAGAGAAGTGGAGTCATTTATTCTCTAGCATAGTGATTTCCAAATTTTGAATGTATTTACCagtaaaacaaagtaaaaacaaagtaaagcaaagtaaaaacaTAAGCTTGCTAAATTT-TCTTTTGTCATTTAAGAGCATCAGGCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171529503 387 - 171630274 aaaaaTAAGAGGAATCAAAACCTTCAAATAGAGGTATGACATTCTTGCTGTGGAAATTTAGAAGCCACAGGGTTTAAGGATTGTAAAGAG---ATCATAAACCCTTATTACTCCCATTTTCCTACTTAATTACTTCATGTAGGCTGTAGCTTACTCTGCCTTTGAAATGTCACAGCAAGGTCACTGTAGATGTGAAGAATCTTTCACTTGCAAAGAGAACTTTAAATCTCTGAAATGGCTGATTTGCAGAGACGTGGAGTCGTTTATTCTTTAGCAT-GGGATTTCCAAATTTTGAACATGTTTATCagtaaaacaaagtaaaaacaaagtaaagcaaagtgaaaacaTAAACTTCCTAAATTT-TCTTTTGTCATTTGACAGGACCAAGCT
i calJac3.chr4             C 0 C 0
s dasNov3.JH561790            167136 317 -    302817 -----AAAGAGGACTCAACACCTTAAAATAAAGATAGGGTGGTTTTACTATGAAAATTCGGGAATCACTGAGTTTAAAGATTGGAGAGAGAAAATCATAA-CCC-TGCTACTCTCCTCATCC-------ACACTTGAGGAAGGGGGTGATGTGCTCTGCCTTTGATAGGACATAGCA----------AGATGTGAAGACTCTGGCACTTGTAGAGAGGGTTTCCAACCTCT-AAATGGCTGG-TGGTGGAAAAGTGGA------------------------------------GAATGTATTTACCAGTAAAATTAA-------------AAAACAGGGTGATGACAAGAGATTGCCAAATTTCTGTTTTTTCAGTTAAGAGCACCACACT
i dasNov3.JH561790         C 0 I 1052
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e macFas5.chr4              29139604   0 - 170955103 C
e rheMac8.chr4              29478486   6 + 172585720 I

a score=12690.000000
s hg38.chr6_GL000254v2_alt    292326 3 +   4827813 TTG
s panTro5.chr6              29267501 3 + 175400573 TTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29513697 3 + 173848474 TTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5310611 3 +   6154872 TTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74317208 3 + 122973662 TTG
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2001442 3 -   2157725 TTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28437504 3 -  71996105 TTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2144078 3 +   2316924 TTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2009789 3 -   3067355 TTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171529890 3 - 171630274 TTG
i calJac3.chr4             C 0 I 573
e dasNov3.JH561790            167453 1052 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696 6 -   2996164 I
e macFas5.chr4              29139604 0 - 170955103 C
e rheMac8.chr4              29478486 6 + 172585720 I

a score=41714.000000
s hg38.chr6_GL000254v2_alt    292329 12 +   4827813 AGCGTGAATGTG
s panTro5.chr6              29267504 12 + 175400573 AGCTTGAATGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29513700 12 + 173848474 AGCTTGAATGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5310614 12 +   6154872 AGCGTGAATGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74317211 12 + 122973662 AGCGTGAATGTG
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2001445 12 -   2157725 AACATGAATGTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28437507 12 -  71996105 AACATGAATGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2144081 12 +   2316924 AACATGAATGTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2009792 12 -   3067355 AATGTGAATGTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171530466 12 - 171630274 agcgtgaatgtg
i calJac3.chr4             I 573 C 0
e dasNov3.JH561790            167453 1052 -    302817 I
e canFam3.chr35             25953857 62863 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696  6 -   2996164 I
e macFas5.chr4              29139604  0 - 170955103 C
e rheMac8.chr4              29478486  6 + 172585720 I

a score=6783.000000
s hg38.chr6_GL000254v2_alt    292341 2 +   4827813 CT
s panTro5.chr6              29267516 2 + 175400573 CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29513712 2 + 173848474 CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5310626 2 +   6154872 CT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74317223 2 + 122973662 CT
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2001457 2 -   2157725 TT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28437519 2 -  71996105 TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2144093 2 +   2316924 TT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2009804 2 -   3067355 TT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171530478 2 - 171630274 ct
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26016720 2 +  26524999 ct
i canFam3.chr35            I 62863 C 0
e dasNov3.JH561790            167453 1052 -    302817 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696 6 -   2996164 I
e macFas5.chr4              29139604 0 - 170955103 C
e rheMac8.chr4              29478486 6 + 172585720 I

a score=474976.000000
s hg38.chr6_GL000254v2_alt    292343 110 +   4827813 TTGGATAAATGAATTGATTTCACTTCTCTTGATAAATGCCAA---TATTTCTTTAGTGCTCTACATTCTACTTTT-TTCCATCTAATTCATGATTCTGCTGAAGA-TTTTTTCAT
s panTro5.chr6              29267518 110 + 175400573 TTGGATAAATGAATTGATTTCACTTCTCTTGATAAATGCCAA---TCTTTCTTTAGTGCTCTACATTCTACTTTT-TTCCATCTAATTAATGATTCTGCTGAACA-TTTTTTCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29513714 110 + 173848474 TTGGATAAATGAATTGATTTCACTTCTCTTGATAAATGCCAA---TCTTTCTTTAGTGCTCTACATTCTACTTTT-TTCCATCTAATTAATGATTCTGCTGAACA-TTTTTTCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5310628 110 +   6154872 TTGGATAAATGAATTGATTTCACTTCTCTTGATAAATGCCAA---TATTTCTTTAGTGCTCTACATTCTACTTTT-TTCCATCTAATTCATGATTCTGCTGAACA-TTTTTTCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74317225 110 + 122973662 TTGGATAAATGATTTGATTTAACTTCTCATGATAAATGCCAA---TATTTCTTGAGTGCTCTACATTCTACTTTT-TTCCATCTAATTCATGATTTTGCTGAACA-TTTTTTCAT
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2001459 111 -   2157725 TTGGATAAATAAATAGATTTAACTTCTCTTGATAAATGCCAA---CATTTCTTTAGTGCTCTACATTCTACTTTTCTTCCATCTAATTCATGATTTTGCTGAACA-TTTTTTCAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28437521 111 -  71996105 TTGGATAAATAAATTGATTTAACTTCTCTTGATAAATGCCAA---CATTTTTTTAGTGCTCTACATTCTGCTTTTCTTCCATCTAATTCATGATTTTGCTGAACA-TTTTTTCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2144095 111 +   2316924 TTGGATAAATAAATTGATTTAACTTCTCTTGATAAATGCCAA---CATTTCTTTAGTGCTCTACATTCTACTTTTCTTCCATCTAATTCATGATTTTGCTGAACA-TTTTTTCAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2009806 111 -   3067355 TTGGATAAATAAATTGATTTAACTTCTCTTGATAAATGCCAA---CATTTCTTTAGTGCTCTACATTCTACTTTTCTTCCATCTAATTCATGATTTTGCTGAACA-TTTTTTCAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171530480 111 - 171630274 tTGAATAAATGAATTGATTTAACTTCTCTTGATAAATGCCCA---TACATCTTTAGTGCTCTACACTCTACTTTT-TTCCATCAAATTCATAATTTTGTGAAACATTTTTTTTAT
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26016722  98 +  26524999 ttgcataaatgaatCAGTTAATTATCTGTTGATAATTTTTAA---TATTATTT-------------CCTATCTCTCTTCCATCGAACTCATGACTTTGCTGACCA-TTCTTCTAT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            168505 110 -    302817 ttgagtgaatgaatTGA---AGCTTCTGTTGACAAAGGCTGATATTATTTCTTTACCTCTTGACACTGATTATTT-TTCCATCTAACTCATAAATTTGCTGAACA-CTTTTCTCT
i dasNov3.JH561790         I 1052 C 0
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e macFas5.chr4              29139604   0 - 170955103 C
e rheMac8.chr4              29478486   6 + 172585720 I

a score=1727482.000000
s hg38.chr6_GL000254v2_alt    292453 297 +   4827813 CCACAGTATTCTCTTCAGTGCACTCTTTACATCTTTGTTTCTTAAAGTGTAGATGGGAAGGTTAAGGCTGGGTGTGATGATTGTGTGAA--AGAGTGAAGAACTTCCCTTCATCTTGGGATATGGTATTCT----GTGGCTTCATGTATATATAAATGATTGTTCCATAAAACAGAATTACTACTGTGAGGTGGGAGCCACATGTATTAAGGATCTTTTGCAACCTTGTTGCTGACTTGATCCTCATTACAGCTTGAGTGAT--AACTCCATATGAGATAAGAATTAGTGATAGAGGTACGAAAA
s panTro5.chr6              29267628 297 + 175400573 CCACAGTATTTTCTTCAGTGCACTCTTTACATCTTTGTTTCTTAAAGTGTAGATGGGAAGGTTAAGGCTGGGTGTGATGATTGTGTAAA--AGAGTGAAGAACTTCCCTTCATCTTGGGATATGGTATTCT----GTGGCTTCATGTATATATAAATGATTGTTCCATAAAACAGAATTACTACTGTGAGGTGGGAGCCACATGTATTAAGGATCTTTTGCAATCTTGTTGCTGACTTGATCCTCATTACAGCTTGAGTGAT--AACTCCGTATGAGATAAGAATTAGTGATAGAGGTACGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29513824 297 + 173848474 CCACAGTATTTTCTTCAGTGCACTCTTTACATCTTTGTTTCTTAAAGTGTAGATGGGAAGGTTAAGGCTGGGTGTGATGATTGTGTAAA--AGAGTGAAGAACTTCCCTTCATCTTGGGATATGGTATTCT----GTGGCTTCATGTATATATAAATGATTGTTCCATAAAACAGAATTACTACTGTGAGGTGGGAGCCACATGTATTAAGGATCTTTTGCAATCTTGTTGCTGACTTGATCCTCATTACAGCTTGAGTGAT--AACTCCGTATGAGATAAGAATTAGTGATAGAGGTACGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5310738 296 +   6154872 CCACATTATTCTCTTCAGTACACTCTTTACATCTTTGTTTCTTAAAGTGTAGATGGGAAGGTTAAGGCTGGGTGTGATGATTGTGTAAA--AGAGTGAAGAACTTCCTTTCATCTTGGGATATGGTATTCT----GTGGCTTCATGTATATATAAATGATTGTTCCATAAAACAGAATTACTACTGTGAGGTGGGAGCCACATGTATTAAGGATCTTTTGCAACCTTGTTGCTGACTTGATCCTCATTACAGCTTGAGTGAT--AACTCCATATGAGATAAGAATTAGTGATAGAGGTA-GAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74317335 298 + 122973662 CCACAGTATTCTCTTCAGGGCACTCTTTACATCTTTGTTTCTT--AGTGTAGATCGGAGGGTTAAGGCTGGGTGTGATGATTGTGTAAAACAGAGTGAAGAACTTCCCTTCATCTTGGGATATGGTATTCT----GTGGCTTCATGTATATATAAATGATTGTTCCATAAAACAGAATTACTACTGTGAGGTGGGAGCCACATGTA-TAAGGGCCTTTTGCAACCTTGTTGCTGACGTGATCCTCATTACAGCTTGAGTGATAAAACTCCATATGTGTTAAGAATTAGTGATAGAGGTACGAAAA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             141733852 299 + 170955103 CCCCAttagtctcttcactgcccctcttacatctttgtttctgagggtgtagattagagggTTAAGACTAGGTGTGACAACAGTATAAAAGAGAGCAATGAACTTGCCTTGATCTTGAGA----ATTTTCTGATGGTGGCTGGAGATATATGCACATGGCCGGAATGAAAAAGAGAGATACAACCATAAGGTGGGCTCCACATGTTCCAAACACTCTCTGAAGCCCAGTGGTTGATTGCATCCTCAGTACAGCCTGGACGAT--GGCACCATAAGAAGTGAGAATGAGGATGAGAGGTATGAGAA
i macFas5.chr4             n 0 I 68
s cerAty1.NW_012001495v1     2001570 299 -   2157725 CCACAGTATTCTCCTCAGTGCACTCTTTACATCTTTGTTTCATAAAGTGTAGATCGGAGGGTTAAGGCTGGATGTGATGATTGTCTAAAAGAGAGTGAAGAACTTCCCTTCATCTTGGGATATGGTATTCT----GTGGCTTCATGTATACATAAATGATTGTTCCATAAAACAGAATTACTACTGTGAGGTGGGAGCCACATGTATTAAGGACCTTTTGCCACCTTGTTGCTGACTTGATCCTCATTACAGCTTGAGTGAT--AACTCCATATGAGATAAGAATTAGTGATAGAGGTACGAAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28437632 299 -  71996105 CCACAGTGTTCTCCTCAGTGCACTCTTTACATCTTTTTTTCATAAAGTGTAGATCGGAGGGTTAAGGCTGGGTGTGATGATTGTGTAAAAGAGAGTGAAGAACTTCCCTTCATCTTGGGATATGGTATTCT----GTGGCTTCATGTATATATAAATGATTGTTCCATAAAACAGAATTACTACTGTGAGGTGGGAGCCACATGTATTAAGGACCTTTTGCCACCTTGTTGCTGAATTGATCCTCATTACAGCTTGAGTGAT--AACTCCATATGAGATAAGAATTAGTGATAGAGGTACGAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2144206 299 +   2316924 CCACAGTATTCTCCTCAGTGCACTCTTTACATCTTTGTTTTGTAAAGTGTAGATCGGAGGGTTAAGGCTGGGTGTGATGATTGTGTAAAAGAGAGTGAAGAACTTCCCTTCATCTTGGGATATGGTATTCT----GTGGCTTCATGTATATATAAATGATTGTTCCATAAAACAGAATTACTACTGTGAGGTGGGAGCCACATGTATTAAGGACCTTATGCCACCTTGTTGCTGGCTTGATCCTCATTACAGCTTGAGTGAT--AACTCCATATGAGATAAGAATTAGTGATAGAGGTACGAAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2009917 299 -   3067355 CCACAGTATTCTCCTCAGTGCACTCTTTACATCTTTGTTTCGTAAAGTATAGATCGGAGGGTTAAGGCTGGGTGTGATGATTGTGTAAAAGAGAGTGAAGAACTTCCCTTCATCTTGGGATATGGTATTCT----GTGGCTTCATGTATATATAAGTGATTGTTCCATAAAACAGAATTACTACTGTGAGGTGGGAGCCACATGTATTAAGGACCTTTTGCCACCTTGTTGCTGACCTGATCCTCATTACAGCTTGAGTGAT--AACTCCATATGAGATAAGAATTAGTGTTAGAGGTACGAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171530591 298 - 171630274 CCACAGTATTCTGTTCAGTGCACTCTTTACATCTTTGTTTCTTAAAGTGTAGATTGGAGGGTTAAGGCTGGGTGTGATGATTGTGTAAA-GAGAGTTAAGAACTTCCCTTCATCTTGGGATATGGTATTCT----GTGCCTTCCTGTATATATAAATGATTGTCCCATAAAACAGAATTACTACTGTGAGGTGGTAGCCACATGTATTAAGGACCTTTTGCCACATTATTGCTGACTTGATCCTCATTAGAGGCTGGGTGAT--AACTCCATGTGAGACAGGAATTAGTGATAGAGGTATGAAAA
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26016820 299 +  26524999 ATGTAGTATTCTCTTTACTGCACTCTTTACATCTTTGTTTCTTAAAGTGTAGATTAGAGGGTTAAGGGTGGGTGTGATGATAGTGTAAAAGAAAGTAAAGAACTTCCCCTTATCTTGGGATGTGCTACTAT----GTGGTTTCATGTACATGTAAATGATTGTTCCATAAAACAGAGTTACTACTGTGAGGTGGGAACCACATGTATTGAGGACCTTATGCCACCTTGTTGCTGACTTGATCCTCATGACAGCTTGAGTGAT--AACTGCATATGAGATGAGAATTAGTGACAGAGGTATTAGAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            168615 299 -    302817 CCACAGTATTCTCTTTACTGCACTCTTTACATCTTTGTTTCTTAAAGTGTATATCAGAGGGTTGAGGCTGGGTGTGACAATTGTGTAAAAGAGAGAAAGGAACTTGCCCTCATCTTGGGATGTGCTATTCT----GTGGCTTCATGTACATGTAAATGACTGTTCCATAAAACATAGTTACTACTGTGAGGTGAGAGCCACATGTATTCAGGACCTTACGCCACCTTGCTGGTGACCTGATCCGCATGACAGCTTGAGTGAT--AACTGCATATGAGATAAGAATCAGTGATAGAGGTACTAGGA
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e rheMac8.chr4              29478486   6 + 172585720 I

a score=355181.000000
s hg38.chr6_GL000254v2_alt    292750 68 +   4827813 GAAATACCACTCCGAAAGCAAAGACAACAATCTCAATTACTTTTGAATAGACACAAGCCATCTTGATC
s panTro5.chr6              29267925 68 + 175400573 GAAATACCACTCCGAAAGCAAAGACAACAATCTCAATTACTTTTGAATAGACACAAGCCATCTTGATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29514121 68 + 173848474 GAAATACCACTCCGAAAGCAAAGACAACAATCTCAATTACTTTTGAATAGACACAAGCCATCTTGATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5311034 68 +   6154872 GAAATACCACTCCGAAAGCAAAGACAACAATCTCAATTACTTTTGAATAGACACAAGCCATCTTGATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74317633 64 + 122973662 GAAATACCACTCTAAAAGCAAAGACAACAATCTCAA----TTTTGAATAGACACAAGCCATCTTGATC
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2001869 68 -   2157725 GAAATACCACTCCAAGTGCAAAGACAACAATCTCAATTACTTTTGAATAGACACAAGCCATCTTGATC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28437931 68 -  71996105 GAAATACCACTCCAAGAGCAAAGACAACAATCTCAATTACTTTTGAATAGACACAAGCCATCTTGATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2144505 68 +   2316924 GAAATACCACTCCAAGAGCAAAGACAGCAATCTCAATTACTTTTGAATAGACACAAGCCATCTTAATC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2010216 68 -   3067355 GAAATACTACTCCAAGAGCAAAGACAACAATCTCAATTACTTTTGAATAGACATAAGCCATCTTGATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171530889 68 - 171630274 AAAATAACACTCCAAGAGCAAAGACAACAATCTCAACTACTTTTGAAAAGACCTAAGCCATCTTTATC
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26017119 68 +  26524999 GTAATATCACTCCAAGAGCATAGACAGTGATCTCCATTACTTTTGAATAGACACAAGCCATCTTGATC
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            168914 68 -    302817 GAAAAATGACTCCAAGTGCAGAGACGACAATCTCAACCATTTTTGAATAGACACAAGCCATCTTGACC
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696  6 -   2996164 I
e macFas5.chr4             141734151 68 + 170955103 I
e rheMac8.chr4              29478486  6 + 172585720 I

a score=3121964.000000
s hg38.chr6_GL000254v2_alt    292818 539 +   4827813 AATGCTGGCATCTCACAGAAAAAATTATCCACTTCCCGGTGCCCACATCTTGGCAACTTCAAAGTCAAGGAGCAAACAATTAAGGCACTGGCAAGACCACTCAACC-AGGCAG--------------TGGCAAAGCTGAGGGTGCATT-TTAAGGTGTAGTGAAGAGGTTGACAGACAGCAGCATAACGATCATAGG-CCATCACAGCCAACAGAAGACATTCTGTGGCTCCCAAGTCAAGGACAAAAAAGAATTGGAGTACACACCCTCCATAAGTAATAGATTTTTTTGGGCCCCATTGATTTGCCAGCATCTGGGGGATAATGCTAGTTGTATAACAGAGGTCCAAGAAAGACAAATTGGATAAGAAAAAATACATGAAGGTATGGAGCTGGGTGTCTAGATAAGATACAAGAATGATGGTTGTATTTCCTACCAGAGTCACAATATAGATGATGAAGACAACCACTGAGATGATGTGCTCTAATTGGGGTCGATCAGAAAACCCCAGAAGGATGAAATCTGTTCCAGAACTTACACTGCTTGTTTCCATTGT
s panTro5.chr6              29267993 540 + 175400573 AATGCTGGCATCTCACAGAAAAAATTATCCACTTCCTGGTGCCCACATCTTGGCAACTTCAAAGTCAAGGAGCAAACAATTAAGGCACTGGCAAGACAACTCAACC-AGGCAG--------------TGGCAAAGCTGAGGGTGCATTATTAAGGTGTAGTGAAGGGGTTGACAGACAGCAGCATAACGATCATAGG-CCATCACAGCCAACAGAAGACATTCTGTGGCTCCCAAGTCAAGGACAAAGAAGAATTGGAGTACACACCCTCCATAAGTAATAGATTTTTTTGGGCCCCATTGATTTGCCAGCATCTGGGGGATAATGCTAGTTGTATAACAGAGGTCCAAAAAAGACAAATTGGATAAGAAAAAATACATGAAGGTATGGAGCTGGGTGTCTAGATAAGATAAAAGAATGATGGTTGTATTTCCTACCAGAGTCACAATATAGATGATGAAGATAACCACTGAGATGATGTGCTCTAATTGGGGTCGATCAGAAAACCCCAGAAGGATGAAATCTGTTCCAGAACTTACACTGCTTGTTTCCATTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29514189 540 + 173848474 AATGCTGGCATCTCACAGAAAAAATTATCCACTTCCCGGTGCCCACATCTTGGCAACTTCAAAGTCAAGGAGCAAACAATTAAGGCACTGGCAAGACAACTCAACC-AGGCAG--------------TGGCAAAGCTGAGGGTGCATTATTAAGGTGTAGTGAAGGGGTTGACAGACAGCAGCATAACGATCATAGG-CCATCACAGCCAACAGAAGACATTCTGTGGCTCCCAAGTCAAGGACAAAGAAGAATTGGAGTACACACCCTCCATAAGTAATAGATTTTTTTGGGCCCCATTGATTTGCCAGCATCTGGGGGATAATGCTAGTTGTATAACAGAGGTCCAAAAAAGACAAATTGGATAAGAAAAAATACATGAAGGTATGGAGCTGGGTGTCTAGATAAGATAAAAGAATGATGGTTGTATTTCCTACCAGAGTCACAATATAGATGATGAAGACAACCACTGAGATGATGTGCTCTAATTGGGGTCGATCAGAAAACCCCAGAAGGATGAAATCTGTTCCAGAACTTACACTGCTTGTTTCCATTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5311102 540 +   6154872 AATGCTGGCATCTCACAGAAAAAATTATCCACTTCCCGGTGCCCATATCTTGGCAACTTCAAAGTCAAGGAGCAAACAATTAAGGCACTGGCAAGACCACTCAACC-AGGCAG--------------TGGCAAAGCTGAGGGTGCATTATTAAGGTGTAGTGAAGAGGTTGACAGACAGCAGCATAACGATCATAGG-CCATCACAGCCAACAGAAGACATTCTGTAGCTCCCAAGTCAAGGACAAAGAAGAATTGGAGTACACACCCTCCATAAGTAATAGATTTTTTTGGGCCCCATTGATTTGCCAGCATCTGGGGGATAATGCTAGTTGTATAACAGAGGTCCAAGAAGGACAAATTGGATAAAAAAAAATACATGAAGGTATGGAGCTGGGTGTCTAGATAAGATACAAGAATGATGGTTGTATTTCCTACCAGAGTCACAATATAGATGATGAAGACAACCACTGAGATGATGTGCTCTAATTGGGGTCGATCAGAAAATCCCAGAAGGATGAAATCTGTTCCAGAACTTACACTGCTTGTTTCCATTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74317697 551 + 122973662 AATGCTGGCATCTCACAGAAAAAATTATCCACTTCCTGGTGCCCACATCTTGGCAACTTCAAAGTCAAGGAGCAAA----GAAGGCACTGGCAAGACCACTCAACC-AGGCAGTGAGCGCCATTTTCTGGCAAAGCTGAGGGTGCATTATTAAGGTATAGTGAAGAGGTTGACAGACAGCAGCATAACGATCATAGGCCCATCACAGCCAATAGAAGACATTCTGTGGCTCCCAAGTCAAGGACAAAGAAGAATTGGGGCACACACCCTCCATAAGTAATAGATTTTTTTGGAGCCCATTGATTTGCCAGCATCTGGGGGATAATGCTAGTTATATAACAGAGGTCCGAAAAAGACAAATTGGATAAGAAAAAATACATGGGGGTATGGAGCTGGGTGTCTAGATAAGATACAAGAATGATGGTTGTATTTCCTACCAGAGTCACAATATAGATGACGAAGAGAACCACTGAGATGATGTGCTCTAATTGGGGTCAATCGGAAAACCCCAGAAGGATGAAATCTGTTCCAGAGCTTCCATTGCTTGTTTCCATTGT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             141734219 553 + 170955103 AGTGCTGGAACTTCACAGAAAAAGTGATCTACTTGGTGGTGTCCACACAGGGGTATCCAGAAGGTGAAGGAGGAATGAAGTGCTGAGTTGGTAAAACCGCTTACCC-AAGAAGCCACAGCCAGCAGGTGGCAGAAACGAGGATGCATGAGGACAGTGTAATGCAAAGGTCTACACACAGCTGCGTAACGGTCATAGG-ACATCACCACCAGTAGGACACACTCTGTGGTTCCCAGTGCAAGAACAAAGTAAAGTTGAATCATGCAACCAGCATAAGAGATGGTTTTTTCCGGGCCCCAGAGATTAACCAGCAACTGAGGGATAGAGCTGGTGGTGTAGCAGAGATCCAGAAATGAGAGGTTTAAAAGGAAAAAGTACATGGGAGTGTGGAGATGGGAGTCCAGGTATGACAGGATGATGATGAACAGATTTCCTATCAGTGTCATCAAGTAGAAGATCAAGACAACCACGAAGAGAACTACTTCTAGATGAGGCCAGTTAGAAAATCCAACTAAAATAAAGTACCCCTCAGAGCTAGCATTGACT-TTTCCATCAT
i macFas5.chr4             I 68 n 68
s cerAty1.NW_012001495v1     2001937 554 -   2157725 AATGCTGGCATCTCACAGAAAAAATTATCCACTTCCCGGTGCCCACATCTTGGCAACTTCAAAGTCAAGGAGCAAACAATTAAGGCACTGGCAAGACCACTCAACC-AGGCAGTGAGCACCATTTTCTGGCAAAGCTGAGGGTGCATTATTAAAGTGTAGTGAAGAGGTTGACAGACAGCAGCATAATGATCATAGG-CCATCACAGCCAATAGAAGACATTCTGTGGCTCCCAAGTCAAGGACAAAGAAGAATTGGAGCACACACCCTCCATAAGTAATAGATTTTTTTGGACCCCATTGATTTGCCAGCATCTGGGGGATAATGCTAGTTGTATAACAAAGGTCCAAAAAAGACAAATTGGATAAGAAAAAATACATGGGGGTATGGAGCTGGGTGCCTAGATAAGATACAAGATTGATGGTTGTATTTCCTACCAGAGTCACAATATAAACGATGAAGACAACCACTGAGATGATGGGCTCTAATTGGGGTCAATCAGAAAACCCCAGAAGGATGAAATCTGTTCCAGAACTTCCATTGCTTGTTTCCATTAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28437999 544 -  71996105 AATGCTGGCATCTCACAGAAAAAATTATCCACTTCCCGGTGCCCACATCTTGGCAACTTCAAAGTCAAGGAGCAAACAATTAAGGCACTGGCAAGACCACTCAACC-AGGCAGTGAGCACCATTTTCTGGCAAAGCTGAGGGTGCATTATTAAGGTGTAGTGAAGAGGTTGACAGACAGCAGCATAATGATCATAGG-CCATCACAGCCAAT---AGACGTTCTGTGGCTCCCAAGTCAAGGACAAAGAAGAATTGGAGCACACACCCTCCATAAGTAATAGG-TTTTTTGGACCCCATTGATTTGCCAGCATCTGGGGGATAATGCTAGTTGTATAACAAAGGTCCAAAATAGACAAATTGGATAAGAAAAAATACATGGGGGTATGGAGCTGGGTGTCTAGATAAGATACAAGAATGATGGTTGTATTTCCTACCAGAGTCACAATATAAACAATGAAGACAACCACTGAGATGATGGGCTCTAATTG------ATCAGAAAACCCCAGAAGGATGAAATCTGTTCCAGAACTTCCATTGCTTGTTTCCATTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2144573 554 +   2316924 AATGCTGGCATCTCACAGAAAAAATTATCCGCTTCCCGGTGCCCACATCTTGGCAACTTCAAAGTCAAGGAGCAAACAATTAAGGCACCAGCAAGACCACTCAACC-AGGCAGTGAGCACCATTTTCTGGCAAAGCTGAGGGTGCATTATTAAGGTGTAGTGAAGAGGTTGACAGACAGCAGCATAACGATCATAGG-CCATCACAGCCAATAGAAGACATTCTGTGGCTCCCAAGTCAAGGACAAAGAAGAATTGGAGCACACACACTCCATAAGTAATAGATTTTTTTGGACCCCATTGATTTGCCAGCATCTGGGGGATAATGCTAGTTGTATAACAAAGGTCCAAAACAGACAAACTGGATAAGAAAAAATACTTGGGGGTATGGAGCTGGGTGTCTAGATAAGATACAAGAATGATGGTTGTATTTCCTACCAGAGTCACAATATAAACGATGAAGACAACCACTGAGATGATGGGCTCTAATTGGGGTCAATAAGAAAACCCCAGAAGGATGAAATCTGTTCCAGAACTTCCATTGCTTGTTTCCATTAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2010284 554 -   3067355 AATGCTGGCATCTCACAGAAAAAATTATCCACTTCCTGGTGCCCACATCTTGGCAACTTCAAAGTCAAGAAGCAAACAATTAAGGCACTGGCAAGACCACTCAACC-AGGCAGTGAGCACCATTTTCTGGCAAAGCTGAGGGTGCATTATTAAGGTGTAGTGAAGAGGTTGACAGACAGCAGCATAACGATCATAGG-CCATCATAGCCAATAGAAGACATTCTGTGGCTCCCAAGTCAAGGACAAAGAAAAATTGGAGCACACACCCTCCATAAGTAATAGATGTTTTTGGACCCCATTGATTTGCCAGCATCTGGGGGATAATGCTAGTTGTATAACAAAGGTCCAAAAAAGACAAATTGGATAAGAAAAAATACATGGGGGTATGGAGCTGGGCATCTAGATAGGATACAAGAATGATGGCTGTATTTCCTACCAGAGTCACAATATAGACGATGAAGACAACCACTGAGATGACGTGCTCTAATTGGGGTCGATCAGAAAACCCCAGAAGGATGAAATCTGTTCCAGAACTTCCATTGCTTGTTTCCATTGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171530957 534 - 171630274 AATGCTCACATCTCACAGAAAAAAT-ATCCACTTCCCAGTGCCCACATCTTGGCAACATCAAAGTTAAGGAGCAAACAA----GGCACTGCCAAGACCACTCAACCAAGGCAGTGAGCACCGTCTCCTGGCAAAGCTGAGGGTGCATTATTAAGGTATAGTGAAGAGGTTGGCAGACAATAGCTTAGAGATCATAGG-CCATCACAGCCAAGAGAAGACATTTTGTGGCTCCCAAGTCAAGGACAAAGAAGAATTGGAGCACACATCCTCCAAAAG---TGGATTTTTTTGGACCCCACTGATTTACCAGCATCTGGGGAATAATGCTGCCTGTATTGCAGAGGCCCAAAAAAGACAAATGGGATGCGATGAAATACATGGGGGTATGGAGCTGGGCGTCCAGATAAGACAGAAGAATAATGGTTGTATTTCCTACCAGAGTCACCGTATAGATGATGAAGACAGCCACTGAGATGATGTGCTCTAATTGGGGTCAGTCAGAAAACCCTACAAGGATGAAGTCTATTCCAGAACTTCCATTGC-------------
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26017187 554 +  26524999 AATGCTGGCGTCTCACAGAAAAAATGATCCACCTCTCGGTGTCCACATCTTGGCAACTTCAGAGTCAAGGAGCAGAGAATTAAGGCACTGCCAAGACCACCTAACC-AGGCAGTGAGCACCATCTTCTGGCAAAGCTGAGGGTGCATTATTACTGTGTAGTGAAGAGGTTGACAGACAGCAGCATAGCGGTCATAGG-CCATCACAGCCAAGAGAAGACATTCTGTGGATCCCAGGTCAAGGGCAACAAAGGATTGAAGCACACACCCTTCATAGGTAATAGACTTTGTTGGACCCCATAGATTTACCAGCATCTGGGGGGCAATGCTTGTTGTATAACAGAGGTCCAGAAAAGACAAATTAGATAAGAAGAAATACATGGGAGTATGGAGCTGGGTGTCTAGGTAAGACACAAGAATGATGGTTGTGTTTCCTACCAGAGTCACAATGTAGAAGATGAAGACAACCCCAGAAATGATGGGTTCTAATTGGGGCCAATCAGAAAACCCCAGGAGGATGAAATCTGTTGTGGAACTTCCATTGTTTGTGTCCATGGC
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            168982 554 -    302817 AAGGCTGGCATCTCACAGAAAAAATTATCTACCTCCCTGTGTCCACACCTTGGCAACTTCAAAGTCAAGGAACAAAGGATTAGGGCACTGCCAAGACCGCCCGACC-AGGCGGACAGCACCATCTTCTGGCAGAGCTGGGGATGCATTATTACTGTGTACTGAAGAGGCTGGCAGACAGCTGCGTAGCGGTCATAGG-CCATCACCGCCAAGAGAAGACACTCTGTGGCTCCCAGGTCAAGGGCAAAGAAAAACTGGAGCACACACCCTCCATAGGTAATAGACTTTTTTGGACCCCAGAGGTTTACGAGCATCTGCGGGATAATGCTGGTTGTATAACAGAGGTCCACAAAAGAGAGATTGGATAAGAAGAAATACATGGGGGTACGCAGGTGGGTGTCCAGGTGAGATACGAGAATGATGGTTGTGTTTCCTATCAGAGTCCCAATATAGAAGAAGAAAACAACCACAGAGATGACGAGCTCTAATTGGGGTCGATCTGAAAACCCCAGGAGGATGAAGTCTGTTTCAGAACTTCCATTGCCTGTTTCCATTGC
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e rheMac8.chr4              29478486   6 + 172585720 I

a score=25905.000000
s hg38.chr6_GL000254v2_alt    293357 5 +   4827813 TCCTT
s panTro5.chr6              29268533 5 + 175400573 TCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29514729 5 + 173848474 TCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5311642 5 +   6154872 TCCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74318248 5 + 122973662 TCCTT
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2002491 5 -   2157725 TCCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28438543 5 -  71996105 TCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2145127 5 +   2316924 TCCTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2010838 5 -   3067355 TCCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171531491 5 - 171630274 TCTTT
i calJac3.chr4             C 0 I 1588
s canFam3.chr35             26017741 5 +  26524999 TCCTC
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            169536 5 -    302817 TTCTC
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696 6 -   2996164 I
e macFas5.chr4             141734772 68 + 170955103 I
e rheMac8.chr4              29478486 6 + 172585720 I

a score=834333.000000
s hg38.chr6_GL000254v2_alt    293362 187 +   4827813 AAGAAAAGCTAGCAGGC---AATATCATGGTAACCAAAAATAGTGTCAGGTTTAGGTAGAACTG-AAAATCTCTGAAGTTTCTCAAGGGTATCCAAAACTCTCTTATTTGCATGCTCTCTCTCATTTGGAACATCTCTTTTAACATTTCCCTATGGCCCAGTGCTCACAACTTGTTCATATTTA-----ATCCAAA
s panTro5.chr6              29268538 187 + 175400573 AAGAAAAGCTAGGAGGC---AATATCATGGTAACCAAAAATAGTGTCAGGTTTAGGTAGAACTG-AAAATCTCTGAAGTTTGTCAAGGGTATCCAAAACTCTCTTATTTGCATGCTCTCTCTCATTTGGAACATCTCTTTTAACATTTCCCTATGGCCCAGTGCTCACAACTTGTTCATATTTA-----ATCCAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29514734 187 + 173848474 AAGAAAAGCTAGGAGGC---AATATCATGGTAACCAAAAATAGTGTCAGGTTTAGGTAGAACTG-AAAATCTCTGAAGTTTGTCAAGGGTATCCAAAACTCTCTTATTTGCATGCTCTCTCTCATTTGGAACATCTCTTTTAACATTTCCCTATGGCCCAGTGCTCACAACTTGTTCATATTTA-----ATCCAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5311647 187 +   6154872 AAGAAAAGCTAGGAGGC---AATATCATGGTAACCAAAAATAGTGTCAGGTTTAGGTAGAACTG-AAAATCTCTTAAGTGTGTTAAGGGTATCCAAAACTCTCTTATTTGCATGCTCTCTCTCATTTGGAACATCTCTTTTAACATTTCCCTATGGCCCAGTGCTCACAACTTGTTCATATTTA-----ATCCAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74318253 185 + 122973662 AAGAAAAGCTAGGGGAC---AATATCATGGTAACCAAAAATAGTGTCAGCTTTAGGTAGAACTG-AAAATCTCTGAAGTTTGTCAAGGGTATCAAAAA--CTCTTATTTGCGTGCTTTCTCTCATTTGGAACATTTCTGTTAATATTTACCTATGGCCCAGTGCCAACAACTTGTTCATATTTA-----ATCCAAA
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2002496 187 -   2157725 AAGAAAAGCTAGGAGAC---AATATCATGGTAACTAAAAATAGTGTCAGCTTTAGGTAGAACTG-AACATCTCCGAAGTTTGTCATGGGTATCCAAAACTCTCTTATTTGCATGCTTTCTCTCATTGGGAACATCTCTTTTAACATTTCCCCATGGCCCAGTGCCAACAACTTGTTCATGTTTA-----ATCCAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28438548 187 -  71996105 AAGAAAAGCTAGGAGAC---AATATCATGGTAACTAAAAATAGTGTCAGCTTTAGGTAGAACTG-AACATCTCCGAAGTTTGTCATGGGTATCCAAAACTCTCTTATTTGCATGCTTTCTCTCATTGGGAACATCTCTTTTAACATTTCCCCATGGCCCAGTGCCAACAACTTGTTCATGTTTA-----ATCCAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2145132 187 +   2316924 AAGAAAAGCTAGGAGAC---AATATCATGGTAACTAAAAATAGTGTCAGCTTTAGGTAGAACTG-AACATCTCCGAAGTTTGTCATGGGTATCCAAAACTCTCTTATTTGCATGCTTTCTCTCATTGGGAACATCTCTTTTAACATTTCCCCATGGCCCAGTGCCAACAACTTGTTCATGTTTA-----ATCCAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2010843 187 -   3067355 AAGAAAAGCTAGGAGAC---AATATCATGGTAACTAAAAATGGTGTCAGCTTTAGGTAGAACTG-AACATCTCCGAAGTTTGTCATGGGTATCCAAAACTCTCTTATTTGCATGCTTTCTCTCATTGGGAACATCTCTTTGAACATTTCCCGGTGGCCCAGTGCCAACAACTTGTTCGTGTTTA-----ATCCAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171533084 173 - 171630274 aagaaaagCTAGGAGACAATAATACCATGGTAACCAAAAATATTGTCAGTTTTAGGTAGAACTGAAAAACCTCTGAAGTTTGTCATGGGTATCCAAAACTCTCTTATTT------------------GGAACATCTCTTTTAACATTTCCTCATGGCCCAGTGCCAACAACTTATTCGTATTTA-----ATCCAAA
i calJac3.chr4             I 1588 C 0
s canFam3.chr35             26017746 184 +  26524999 AGGAAAGTCTAGGAGAC---AA-ACCATGGTAATC-AAAATAGCATCAGGCCTAGGTAGAAATA-AAAATCTCTGAAATTTGCCATGAGTATCTCAAATTCACTTGTTTGTGTGCTCTGTTCCATTTGG-ACACCTATGTTAACAATTTCCTTGTGTTCAGTGCCCAAAGCCTCTCCCTGATTA-----ATCCTAA
i canFam3.chr35            C 0 I 206
s dasNov3.JH561790            169541 186 -    302817 ATGAAAGGCTA---GAT---TATACTATGGTAAACAGAAATGGTGTCAGCCTGAGGCAGAACTGTAAAATCTCTGAAGTTTGTCATGGGTGTCTAAACCTCGGTGACTTCCGTGCTTTCTCCCATTGGGGGTATCACTCTT----TTTCTCAAGTATTCAGTGTCCATAGCTCCTTCATATCTAATCATATCCAAA
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e macFas5.chr4             141734772  68 + 170955103 I
e rheMac8.chr4              29478486   6 + 172585720 I

a score=147083.000000
s hg38.chr6_GL000254v2_alt    293549 36 +   4827813 AT-----T---AATAATA---TGCTAAATCCAATCAGGCTGAATTGT
s panTro5.chr6              29268725 36 + 175400573 AT-----T---AATAATA---TGCTAAATCCAATCAGGCTGAATTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29514921 36 + 173848474 AT-----T---AATAATA---TGCTAAATCCAATCAGGCTGAATTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5311834 36 +   6154872 AT-----T---AATAATA---TGCTGAATCCAATCAGGCTGAATTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74318438 41 + 122973662 ATGAATCT---AATAATA---TGATAAATCCAATCAGGCTGAATTGT
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2002683 41 -   2157725 ATGAATCT---AATAATA---TGCTAAATCCAATCAGGCTGAATTGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28438735 41 -  71996105 ATGAATCT---AATAATA---TGCTAAATCCAATCAGGCTGAATTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2145319 41 +   2316924 ATGAATCT---AATAATA---TGCTAAATCCAATCAGGCTGAATTGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2011030 41 -   3067355 ATGAATCT---AATAATA---TGCTAAATCCAATCAGGCTGAATTGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171533257 44 - 171630274 ATAATTAT---AATAATATGTTGCTAAATCCAATCACACTGAATTGT
i calJac3.chr4             C 0 C 0
s dasNov3.JH561790            169727 44 -    302817 GTGGTTCTAAAAATAACA---TTATAAATGCAATCAGACTAAATTGT
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             26017930 206 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696  6 -   2996164 I
e macFas5.chr4             141734772 68 + 170955103 I
e rheMac8.chr4              29478486  6 + 172585720 I

a score=2315383.000000
s hg38.chr6_GL000254v2_alt    293585 555 +   4827813 AAATCATTGAAAAAACTTAATTTGCTATGTCATTCATTGTTCTATGTATTTCAATTAAGTAATAAAATCATGAAGTCAATTATGTGA-TTTTAAGAGAGGCATATGTATTGAGGAGTTGTTCCTCTTTGAAGCTATGACATAAGCATCACTTGATCATGATAAATCCTTGCATTAT-----TGAAGGAGTTAAGCTTGAGGTAAAAAGTTAAATGACA--TC---TTTTTTTGGAATAAACTCCACCATTTGATAGCAGAATCACTTTCAATATTTACTTGCAAATATCTACATTTCAGCCATTATAATTATAATTATCCTCA---CCACCAACTTACTCCTCCTCCTTATATTT-TTTTTACCCCTCAACATTGCAGGCACTGTTGTTAT--TCTATC----------------AATT---TTGGTGTTCCCTACTACACTG--CCTTTTTTTGTGAGTGTGTTTTTTGTTGCCAGGAAATAATTATCTTTCTTATTA---ATATTTACTTACATGTATAAAGGCCTATATGTT-TTTT-AAACAGCTTTAATGACTAATATT----ACACCATCTAAACAGCCTTACTGATTTGTTGCAG
s panTro5.chr6              29268761 557 + 175400573 AAATCATTGAAAAAAGTTAATTTGCTATGTCATTCATTGTTCTATGTATTTCAATTAAGTAATAAAATCATGAAGTCAATTATGTGA-TTTTAAGAGAGGCATATGTATTGAGGAGTTGTTCCTCTTTGAAGCTATGACATAAGCATCGCTTGATCATGATAAATCCTTGCATTAT-----TGAAGGAGTTAAGCTTGAGGTAAAAAGTTAAATGACA--TC-TTTTTTTTTGGAATAAACTCCACCATTTGATAGCAGAATCACTTTCAATATTTACTTGCAAATATCTACATTTCAGCCATTATAATTATAATTATCCTCA---CCACCAACTTAATCCTCCTCCTTATATTT-TTTTTACTCCTCAACATTGCAGGCACTGTTGTTGT--TCTATC----------------AATT---TTGGTGTTCCCTACTACACTG--CCTTTTTTTGTGAGTGTGCTTTTTGTTGCCAGGAAATAATTATCTTCCTTATTA---ATATTTACTTACATGTATAAAGGCCTATATGTT-TTTT-GAACAGCTTTAATGACTAATATT----ACACCATCTAAACAGCCTTACTGATTTGTTGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29514957 555 + 173848474 AAATCATTGAAAAAACTTAATTTGCTATGTCATTCATTGTTCTATGTATTTCAATTAAGTAATAAAATCATGAAGTCAATTATGTGA-TTTTAAGAGAGGCATATGTATTGAGGAGTTGTTCCTCTTTGAAGCTATGACATAAGCATCGCTTGATCATGATAAATCCTTGCATTAT-----TGAAGGAGTTAAGCTTGAGGTAAAAAGTTAAATGACA--TC--TTTTTTTTGGAATAAACTCCACCATTTGATAGCAGAATCACTTTCAATATTTACTTGCAAATATCTACATTTCAGCCATTATAATTATAATTATCCTCA---CCACCAACTTACTCCTCCTCCTTATA-TT-TTTTTACTCCTCAACATTGCAGGCACTGTTGTTGT--TCTATC----------------AATT---TTGGTGTTCCCTACTACACTG--CCTTTTTTTGTGAGTGTGCTTTTTGTTGCCAGGAAATAATTATCTTCCTTATTA---ATATTTACTTACATGTATAAAGGCCTATATGTT-TTTT-GAACAGCTTTAATGACTAATATT----ACACCATCTAAACAGCCTTACTGATTTGTTGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5311870 553 +   6154872 AAATCATTGAAAAAACTTAATTTGCTATGTCATTCATTGTTCTATATATTTCAATTAAGTAATAAAATCATGAAGTCAATTATGTGA-TTTTAAGAGAGGCATATGTATTGAGGAGTTGTTCCTCTTTGAAGCTATGACATAAGCATCACTTGATCATGATAAATCCTTGCATTAT-----TGAAGGAGTTAAGCTTGAGGTAAAAAGTTAAATGACA--TC--TTTTTTTTGGAATAAACTCCACCATTTGATAGCAGAATCACTTTCAATATTTACTTGCAAATATCTACATTTCAGCCATTATAATTATAATTATTCTCA---CCACCAACTTA---CTCCTCCTTATATTT-TTTTTACTCCTCAACATTGCAGGCACTGTTGTTAT--TCTATC----------------AATT---TTGGTGTTCCCTACTACACTG--CCTTTTTTTGTGAATGTGTTTTTTGTTGCCAGGAAATAATTATCTTTCTTATTA---ATATTTACTTACATGTATAAAGGCCTATATGTT-TTTT-GAACAGCTTTAATGACTAATATT----ACACCATCTAAACAGCCTTACTGATTTGTTGCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74318479 549 + 122973662 AAATCATTGAAAAAACTTAATTTGCTGTGTCATTCATTGTTCTATGTATTTCAATTAAGTAATAAAACCATGAAGTCAATTATGTGA-TTTTA--AGAGGCGTATGTACTGAGGAGTTGTTCCTCTTTGAAGCTATGACATAAGCATCACTTGATCATGATAAATCCTTGCATTAT-----TGAAGGAGTTCAGCTTGAGGTAAAAAGTTAAATGACA--TCTTTTTTTTTTGGAATAAACTCCACCATTTGATAGCAGAATCACTTTCAATATTTACTTGCAAATATCTACATTCCAGCCATTATAATTATGATTCTCCTCA---CCACCAACTTACTCCTCCTATTT----TT-TTTTTACTCCTCAACATTGCAGGTAC---TGTTAT--TCTATC----------------AATT---TTGGTGTTGCCTACTACACTG--CCTTTTTTTGTGAGTGTGTTTTTTGTTGCCAGGAAATAATTATCTTTCTTATTA---ATCTTTACTTACATGTATAAAGGCCGATATGGT-TTTT-GAACAGCTTTAATGACTAATATT----ACACCATCTAAATAGCCTTACTGATTTGTTGCTG
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2002724 560 -   2157725 AAATCATTGAAAAAACTTAATTTGCTATGTCATTCATTGTTCTATGTATTTCAATTAACTAATAAAATCATGAAGTCAATTATGTGATTTTTAAAAGAAGCGTACATATTGAGGAGTTGTTCCTCTTTGAAGCTGTGATGTAAGCATCACTTGATCATGATAAATCCTTGCATTAT-----TGAAGGAGTTAAGCTTGAGGTAAAAAGTTAAATGATAT-CTTTTTTTTTTTGGAATAAACTCCACCATTTGAT---AGAATCACTTTCAAGATTTACTTGCAAATATCTACATTCCAGCCATTATAATTGTACTTATCATCA---CCACCAACTTACTCCTCCTTCTTATATAT-TTTTTACTCCTCAGCATTGCAGGCACTGTTGTTAT--TCTGTC----------------AATT---TTGGTGTTCCCTACTATTCTG--CCTTTTTTTGTGAGTGTGTTTTTTGTTGCCAGGAAATAATTATCTTTCTTATTATTTATCTTTACTTACATGTATAAAGGCCCATATGTT-TTTT-GAGCAGCTTTAACGACTGATATT----ACACCATCTAAATAGCCTTACTGATTTGTTGCAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28438776 559 -  71996105 AAATCATTGAAAAAATTTAATTTGCTATGTCATTCATTGTTCTATGTATTTCAATTAAGTAATAAAATCATGAAGTCAATTATGTGATTTTTAAGAGAAGCGTATGTATTGAGGAGTTGTTCCTCTTTGAAGCTGTGATGTAAGCATCACTTGATCATGATAAATCCTTGCATTAT-----TGAAGGAGTTAAGCTTGAGGTAAAAAGTTAAATGATA--TTTTTTTTTTTTGGAATAAACTCCACCATTTGAT---AGAATCACTTTCAAGATTTACTTGCAAATATCTACATTCCAGCCATTATAATTGTACTTATCATCA---CCACCAACTTACTCCTCCTCCTTATATAT-TTTTTACTCCTCAGCATTGCAGGCACTGTTGTTAT--TCTGTC----------------AATT---TTGGTGTTCCCTACTATTCTG--CCTTTTTTTGTGAGTGTGTTTTTTGTTGCCAGGAAATAATTATCTTTCTTATTATTTATCTTTACTTACATGTATAAAGGCCCATATGTT-TTTT-GAGCAGCTTTAACGACTGATATT----ACACCATCTAAATAGCCTTACTGATTTGTTGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2145360 561 +   2316924 AAATCATTGAAAAAACTTAATTTGCTATGTCATTCATTGTTCTATGTATTTCAATTAAGTAATAAAATCATGAAGTCAATTATGTGATTTTTAAAAGAAGCGTACGTATTGAGGAGTTGTTCCTCTTTGAAGCTGTGATGTAAGCATCACTTGATCATGATAAATCCTTGCATTAT-----TGAAGGAGTTAAGCTTGAGGTAAAAAGTTAAATGATATCTTTTTTTTTTTTGGAATAAACTCCACCATTTGAT---AGAATCACTTTCAAGATTTACTTGCAAATATCTACATTCCAGCCATTATAATTGTACTTATCATCA---CCACCAACTTACTCCTCCTTCTTATATAT-TTTTTACTCCTCAGCATTGCAGGCACTGTTGTTGT--TCTGTC----------------AATT---TTGGTGTTCCCTACTATTCTG--CCTTTTTTTGTGAGTGTGTTTTTTGTTGCCAGGAAATAATTATCTTTCTTATTATTTATCTTTACTTACATGTATAAAGGCCCATATGTT-TTTT-GAGCAGCTTTAACGACTGATATT----ACACCATCTAAATAGCCTTACTGATTTGTTGCAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2011071 559 -   3067355 AAATCATTGAAAAAACTTAATTTGCTATGTCATTCATTGTTCTATATATTTCAATTAAGTAATAAAATCATGAAGTCGATTATGTGGTTTTTAAGAGAAGTGTATGTATTGAGGAGTTGTTCCTCTTTGAAACTGTGACGTAAGCATCACTTGATCATGATAAATCTTTGCATTAT-----TGAAGGAGTTAAGCTTGAGGTAAAAAGTTAAATGATA--TCTTTTTTTTTTGGAATAAACTCCACCATTTGAT---AGAATCACTTTCAAGATTTACTTGCAAATATCTACATTCCAGCCATTATTATTGTACTTATCATCA---CCACCAACTTACTCCTCCTCCTTATATAT-TTTTTACTCCTCAGCATTGCAGGCACTGTTGTTAT--TCTATG----------------AATT---CTGGTGTTCCCTATTGTTCTG--CCTTTTTTTGTGAGTATGTTTTTTATTGACAGGAAATAATTATCTTTCTTATTATTTGTCTTTACTTACATGTATAAAGGCCCATATGTT-TTTT-GAACAGCTTTAGTGACTGATATT----ACACCATCTAAATAGCCTTACTGATTTGTTGCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171533301 563 - 171630274 AAATTATTGAAAAAACTTAACTTGCCATGTGATTCATTGTTCTATGTATTTCAATTAAGTAATAAAATCATGAAGTAAACTATGTGA-TTTTAAGAGAGGAGTAGGTATTGAAGAGTTGTTCATCTTTGAAGCTATGACATAAGCATCACTTGATCATGATAAACCCTAGCATTAT-----TGAAGGAGTTAAGCTTGAGGTAAAAAGTTGAATGACA--CC--TGTTTTTGGTGATAAACTCCATCATTTGCTAGCAGAATCACTTTCTATATTTACTTGCAAATATCTACATTCCAGCCATTATAATGATAGTCGTCGTCA---CCAAGACCCTCTTTCCCCTCCTTATATTTGTTTTTACTCCTCAACATTGCAGGTACTGTTGTTGTGGTTTTTCACAGCACAAAAATGGAAATCTAATTCGTGTTCCCTACTACACTG--CCT----------------TTTTTGTTGCCAGGAAATAA-TAACTTTCTTATTATTAATTTTTACTTACATGTATAAAGGCC-ACATATT-TTTT-GAACAGCTTTAATGACTAATGTT----ACACCATCTAAATAGCGTTACCGAGTTGTTGCAG
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26018136 517 +  26524999 aaatcttctaaaaaa---aaGTTACCATCACACCTTTGCTTCTCTGTATTTTGATTAAGTAATAAATCCATGAAGTTAATAATGGGA---------------TAGATTTT---GTGTGGTTTCTTTTTAAAATTACAA-ATCAGCAT-ACTTGGTCATGAC-AATTTTTCCCTTAT-----GAAAGGAG-TAAGTTTGAGGTAGAATGTTAAATG-----TCCCATTTTCTTGGGATTCGTCCCCTCATTCGGTAGCAGGATCACTTTCCAGATTCACTTCTAAGTGTGTGGATACCAGCCATTGTAATG------TCCATCA---TCACCAAC------CTCCTCCTTATGTTT-TCCCTCCTATTCAACATTGCAGACACGTGTGTTCC--TGTGTC----------------AATT---CTGTTGTTCCCCA-TATACTGAACTTTTTGTGGCTCATGTG-TTTCTGGTGCCAGGAAA-AATTGTCTTTCTTATTA---ACCTTGGTTTCCATGTACAAATGCT-ATGTGTT-TCTTGGAATACCTTCTGTGACTGCTATT----AAACCATTTAAGAAGCC-TATCGATTTGTTGCAG
i canFam3.chr35            I 206 I 193
s dasNov3.JH561790            169771 543 -    302817 AAAACAGTGAAAAGACTTAATATGC----------ATGGTTCTATGTATTTTGCTTAAGTAATAAAGACATGAAACCAATGATCTAG-TTTTAAGGTTGGGATGTATTTGGAGGAGTTGTTCCTCCTAGACACTATGATATTAGCATCACTAGACCCTGATTAGTGATAACGTTACCCTTATGAGAGGG---AGCTGGAGGTA-AATTTTAAAACATA--CA---TATTCTTGGGATTAGCTCTATTATTTGGTAGCAAAACCACTTTGCATGCTCACTTTCCCATGTCTGC-CTGCAGTCATGGTAACTGTAATCACAGTTAAGCTCACCAGccccctcccctcccct----tc-ctcctcctcctc--ccTGGGTGGCACTGCTCTTCC--TGCATC----------------AGGC---TTGGTGTTTCCTAGGATACTG--CCTTTCTCC-----TGCATGTTTTA-TGCCAGGAACTAATCAGCTCTCTTATTATTAGCCTTTGTTTACATGTACAGAGGTC-ATGTGCTGGTTT-GGATATTTTTAATGACTACTGTTTGCCTCACCATCTCAACGGCCTCATCAACTTGATGCAG
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e macFas5.chr4             141734772  68 + 170955103 I
e rheMac8.chr4              29478486   6 + 172585720 I

a score=1397028.000000
s hg38.chr6_GL000254v2_alt    294140 325 +   4827813 TTAAATGTTGAGGTAATTCCAGAACTATTTGGCCACC----ACGTACAACG---ATCTGTGTCCAATCCTACTTAC-CAGCCATTCAGCAGAATTAGCTGGGCGCTGGGCAGGT--------AATTCAAACAAAAAGCAGTTCATTAAATAGCCA--GAGTTGTTTTAATCTATGGAATTTAC-CAATCCAACATGAGTGGATGTTCTGATTGCTTTGAAATCCTTTAGGTAAAACCATCACCCCA-TTGGGCTCTAAAAGAATACAGATAC-AGATAAAAATGTCATCAATCTCAC---CATTTCTGATTATTGTATCATATCACT-AAGTAGACAAAATATTTAATGA
s panTro5.chr6              29269318 322 + 175400573 TTAAATATTGAGGTAATTGCAGAACTATTTGGCCACC----ACGTACAACG---ATCTGTGTCCAATCCTACTTAC-CAGCCATTCAGCAGAATTAGCTGGGCGCTGGGCAGGT--------AATTCAAACAAAAAGCAGTTCATTAAATAGCCA--GAGTTGTTTTAATCTAAGGAATTTAC-CAATCCAACATGAGTGGATGTTCTGATTGCTTTGAAATCCTTTAGGTAAAACCATCACCCCA-TTGGGCTCTAAAAGAATACAGATAC-AGATAAAAATGTCATCAATCTCAC---CATTTCTGATTATTGTATCATATCACT-AAGTAGACAAAATATTTAA---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29515512 322 + 173848474 TTAAATATTGAGGTAATTGCAGAACTATTTGGCCACC----ACGTACAACG---ATCTGTGTCCAATCCTACTTAC-CAGCCATTCAGCAGAATTAGCTGGGCGCTGGGCAGGT--------AATTCAAACAAAAAGCAGTTCATTAAATAGCCA--GAGTTGTTTTAATCTAAGGAATTTAC-CAATCCAACATGAGTGGATGTTCTGATTGCTTTGAAATCCTTTAGGTAAAACCATCACCCCA-TTGGGCTCTAAAAGAATACAGATAC-AGATAAAAATGTCATCAATCTCAC---CATTTCTGATTATTGTATCATATCACT-AAGTAGACAAAATATTTAA---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5312423 325 +   6154872 TTAAATATTGAGGTAATTCCAGAACTATTTGGCCACC----ACGTACAATG---ATCTGTGTCCAATCCTACTTAC-CAGCCATTCAGCAGAATTAGCTGGGCGCTGGGCAGGT--------AATTCAAACAAAAAGCAGTTCATTAAATAGCCA--GAGTTGTTTTAATCTATGGAATTTAC-CAATCCAACATGAGTGGATGTTCTGATTGCTTTGAAATCCTTTAGGAAAAACCATCACCCCA-TTGGGCTCTAAAAGAATACAGATAC-AGATAAAAATGTCATCAATCTCAC---CATTTCTGATTATTGTATCATATCACT-AAGTAGACAAAATATTTAATGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74319028 313 + 122973662 TTAAATATTGAGGTAATTCCAGAACTATTTGGCCACC----ACGTATAAGA---ATCTGTGTCCAATCTTACTTAC-CAGCCATTCAGCAGAATTA-------GCTGGGCAGGT--------AATTCAAACAAAAAGCAGTTCATTAAATAGCCA--GAGTTGTTTTAACCTATGGAATTTAC-CAATCCAACATGATTGGATGTTTTGATTGCTTTGAAATCCTTTAGGTAAAACCATCACCCCA-TTGGGCTCTAAAAGAAT--AGATAC-AGATAAAAATGTCATCAATCTCAC---CATTTCAGATTATTGTATCATATCACT-AAGTAGACAAAATATTTAA---
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2003284 316 -   2157725 TTAAATATTGAGGTGATTCCAGAACTATTTGGCCACC----ACGTACAACG---ATCTGTGTCCAATCCTACTTAC-CAGCCATTCAGCAGAATTA-------GCTGGGCACGT--------AATTCAAACAAAAAGCAGTTCATTAAATAGCCA--GAGTTGTTTTAACCTATGGAATTTAC-CAATT--ACATGAGTGGATGTTCTGATTGCTTTGAAACCCTTTAGGTAAAACCATCACCTCA-TCGGACTCTAAAGGAATACAGATAC-AGATAAAAATGTCATCGATCTCAC---TATTTCTGATTATTGTATCATATCACT-AAGCAGACGAACTATTTAATGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28439335 316 -  71996105 TTAAATATTGAGGTGATTCCAGAACTATTTGGCCACC----ACGTACAACG---ATCTGTGTCCAATCCTACTTAC-CAACCATTCAGCAGAATTA-------GCTGGGCACGT--------AATTCAAACAAAAAGCGGTTCATTAAATAGCCA--GAGTTGTTTTAACCTATGGAATTTAC-CAATT--ACATGAGTGGATGTTCTGATTGCTTTGAAACCCTTTAGGTAAAACCATCACCTCA-TCGGACTCTAAAGGAATACAGATAC-AAATAAAAATGTCATCGATCTCAC---TATTTCTGATTATTGTATCATATCACT-AAGCAGACAAACTATTTAATGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2145921 316 +   2316924 TTAAATATTGAGGTGATTCCAGAACTATTTGGCCACC----ACGTACAATG---ATCTGTGTCCAATCCTACTTAC-CAGCCATTCAGCAGAATTA-------GCTGGGCACGT--------AATTCAAACAAAAAGCAGTTCATTAAATAGCCA--GAGTTGTTTTAACCTATGGAATTTAC-CAATT--ACGTGAGTGGATGTTCTGATTGCTTTGAAACCCTTTAGGTAAAACCATCACCTCA-TCGGACTCTAAAGGAATACAGATAC-AGATAAAAATGTCATCGATCTCAC---TATTTCTGATTATTGTATCATATCACT-AAGCAGACGAACTATTTAATGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2011630 316 -   3067355 TTAAATATTGAGGTGATTCCAGAACTATTTGGACACC----ACGTACAACG---ATCTGTGTCCAATCTTACTTAC-CAGCCATTCAGTAGAATTA-------GCTGGGCAGGT--------AATTCAAACAAAGAGCAGTTCATTAAAGAGCCA--GAGTTGTTTTAACCTATGGAATTTAC-CAATT--ACATGAGTGGATGTTCTGATTGCTTTGAAACCCTTTAGGTAAAACCATCACCTCA-TTGGACTCTAAAAGAATACAGATAC-AGATAAAAATGTCATCGATCTCAC---TATTTCTGATTATTGTATCATGTCACT-AAGCAGACAAACTATTTAATGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171533864 316 - 171630274 TTAAATATTGAGGTAATTCCAGAACTATTTGGCCACC----ACGTATAACA---ATCTGTGTCCTGTCCTACTTAC-CAGCCATTCAGCAGAATTA-------ACTGGGCAGGT--------AATTCAAACAAAAAGCAGTTCATTAAACAGCTA--GAGTTGTTTTAACCTATGGAATTTAC-CAATT--ACATGAGTGGATGTTCCGATTGCTTTGAAACACTTTAGGTAAAACTATCACCTCC-TTCGACTTGAAAAGAATACAGAGAC-GAATAAAAATATCATCAATCTAAC---TATTTCTGATTATTGTATCATATCACT-AAGTAGACAAAATATTTAATGA
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26018846 329 +  26524999 taaaaaaCTGAATGAATTCTAGAAACATTTGGTTACCCTATATATACAGCACACAACTGTGTTAATGCCTACTTAC-CTGGCATTCAGCAAAAGTA-------GCTAGGTAGgttgaacaagaagttgaacaagaagCAGCTCAGTAAAAAGTCAATGAGATGTTTC-CCCTGTGGAATTTAC-CAATT--ATATGAATCAATCCTCTGCCTGCTTCAGAACTGTATTTGTAAAACC-TCAT-----TTAAATTCTGAAAGATTACAGAAAAGAGATTAAGAACACATAAATTTCAC---TATTTCTGAATAATTGATCATATCATTAAAGTAGGTGGAATGTTTAATGA
i canFam3.chr35            I 193 C 0
s dasNov3.JH561790            170314 321 -    302817 TTACACCTTAAACTAATTCTAGAATCATTTGTTCACA----TAG--CAACA---GTGC-TGTCAGCTCCTACCTGCTTGGCCACTTGGCACAATTA-------GCAAGGCAGCC--------AGTTCAAGCAAAAGGCAGTTTATGAAACAATCAGCGAGTTGAATTTCCCCATGGAATGTACACAAAC--ACATGTGTGGATGTTCTGGTAGCTTTGGAACTGTATAGGTAAAGCCATCACCTCACTTAGACTTTCAAATAATACTGATAAGGGATAAAAAGTAAATCAATCTTACTATTATTTCTGA-TATTGTAGCATACCATC-CAATAGATGGAATGGTTAATGA
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e macFas5.chr4             141734772  68 + 170955103 I
e rheMac8.chr4              29478486   6 + 172585720 I

a score=41357.000000
s hg38.chr6_GL000254v2_alt    294465 15 +   4827813 CTGACTGAgttagtt-------
s panTro5.chr6              29269640 14 + 175400573 -TGACTGAGTTAGtt-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29515834 13 + 173848474 -TGACTGAGTTAGT--------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5312748 15 +   6154872 CTGACTGAGTTAGtt-------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74319341 14 + 122973662 -TGACTGAATTAGCA-------
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2003600 15 -   2157725 GTGACTGAATTAGtt-------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28439651 15 -  71996105 GTGACTGAATTAGTT-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2146237 15 +   2316924 GTGACTGAATTAGtt-------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2011946 15 -   3067355 GTGACTGAATTAGTT-------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171534180 14 - 171630274 CTGACTGGATTAGT--------
i calJac3.chr4             C 0 C 0
s dasNov3.JH561790            170635 18 -    302817 ----CTGAATGAGTTTTTAATT
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             26019175  0 +  26524999 C
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696  6 -   2996164 I
e macFas5.chr4             141734772 68 + 170955103 I
e rheMac8.chr4              29478486  6 + 172585720 I

a score=1999097.000000
s hg38.chr6_GL000254v2_alt    294480 618 +   4827813 ttttttgttgttgttgttt-gttttttttAAAGATAGAATCTTGCTCTGTT--ggccggatgcagtggctcatgcctgtaatcccagcactatgggaggttgaggtgggcggatcacttgatgtcaggag-tccagaccagcagggcctacgtggggaaaaattttgtattttctactaaaaatacaaaaattagctgggcggtgtggtgcgtgcctgtagtcccaactacttgggaggctaaggcaggacaattgcttgaacctgggggcggaggccacagtgagccgagatcgcaccgctgcactccagccggggcgacagaacgagactcttgtctcaaa-----------a-------aaacc-aaaccaaacaaaacaaaaatcttgctctgttgcctaggctggagtgcggtgacacagtgacagctcattgcagcctggacctccggtgctcaagtgatcctctcaactgagcctcctaagtagctgggaccacagatgcatgccactgtgtccaggtaatttttaaatgtttttgtagtgatgaggtctcaccatgttgttcaggctggtttggaactccttggctcaagcaatcctcctgcttc-------------------------ggcctGAGCCCTGGTGTC-GAGCTAATGG
s panTro5.chr6              29269654 601 + 175400573 tttgtt----------ttt-tttttttttAAAGATAGAATCTTGCTCTGTT--ggccgaatgcagtggctcatgcctgtaatcccagcactatgggaggttgaggtgggcggatcacttgatgtcaggag-tccagaccagcatggcctacgtggggaaaaattttgtattttctactaaaaatacaaaaattag--gggcggtgtggtgcgtgcctgtagtcccaactacttgggaggctaaggcaggacaattgcttgaacctgggggcggaggcaacagtgagccgagatcgcaccgctgcactccagccggggcgacagaacgagactcttgtctcaaa-----------a-------------aaaccaaacgaaacaaaaatcttgctctgttgcctaggctggagtgcggtgacacagtgacagctcattgcagcctggacctccggtgctcaagtgatcctcccaactgagcctcctaagtagctgggaccacagatgcatgccactgtgtccaggtaatttttaaatgtttttgtagtgatgaggtctcaccatgttgttcaggctggtttggaactccttggctcaagcaatcctcctgcttc-------------------------ggcctGAGCCCTGGTGTC-GAGCTAATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29515847 595 + 173848474 ----------------TTT-TTTTTTTTTAAAGATAGAATCTTGCTCTGTT--ggccgaatgcagtggctcatgcctgtaatcccagcactatgggaggttgaggtgggcggatcacttgatgtcaggag-tccagaccagcatggcctacgtggggaaaaattttgtattttctactaaaaatacaaaaatcag--gggcggtgtggtgcgtgcctgtagtcccaactacttgggaggctaaggcaggacaattgcttgaacctgggggcggaggcaacagtgagccgagatcgcaccgctgcactccagccggggcgacagaacgagactcttgtctcaaa-----------a-------------aaaccaaacgaaacaaaaatcttgctctgttgcctaggctggagtgcggtgacacagtgacagctcattgcagcctggacctccggtgctcaagtgatcctcccaactgagcctcctaagtagctgggaccacagatgcatgccactgtgtccaggtaatttttaaatgtttttgtagtgatgaggtctcaccatgttgttcaggctggtttggaactccttggctcaagcaatcctcctgcttc-------------------------ggcctGAGCCCTGGTGTC-GAGCTAATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5312763 610 +   6154872 tttttttttt------gtt-tgtttttttAAAGATAGAATCTTGCTCTGTT--ggccggatgcagtggctcatgcctgtaatcccagcactatgcgaggttgaggtgggcggatcacttgatgtcaggag-tccagaccagcatggcctacgtggggaaaaattttgta-tttctactaaaaatacaaaaattagctggg-ggtgtggtgcgtgcctgtagtcccaactacttgggaggctaaggcaggacaattgcttgaacctgggggcggaagctacagtgagccgagatcgcaccgctgcactccagccggggcgacagaacgagactcttgtctcaaa-----------a-------aaaCC-AAACCAAACCAAACAAAAAtcttgctctgttgcctaggctggagtgcggtgacacagtgacagctcattgcagcctggacctccggtgttcaagtgaacctcccaactgagcctcctaagtagctgggaccacagatgcatgccactgtgtccaggtaatttttaaatgtttttgtagtgatgaggtctcaccatgttgttcaggctggtttggaactccttggctcaagcaatcctcctgcttt-------------------------ggcctGAGCCCTGGTGTC-GAGCTAATGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74319355 589 + 122973662 A---------------GAT-TCTATCTTAAAAAAAAAAAAAT--CTATGTT--ggctggatgcagtggctcatgcctgtaatcccagcactatgggaggttgaggtgggcggatcacttgatgtcaggagttccagacctgcat----------ggggaaaaatttgtattttctactaaggatacaaaaatgagctgggcgctgtggtgcgtgcctgtagtcccaactacttggaaggctaaggcaggacaattgcttgaacctgggggtggaggctgcagtgagttgagatcacaccactgcactccagcctgggcgacagaacgagactcttatctcaaa-----------a-------aaaCCGAAACCAAACCaaac-aaaatattgctctgttgccgaggctggagtgcggtgacacaatgacagctcattgcagcctggacctccggtgctcaagtgatcctcccaactgagcctcctacgcagctgaggccacagatgcacgccactgtggccaggtaatttttagatgtttttgtagtgatgaggtctcacta---tgttcaggctggtttggaactccttggctcaagcaattctcctgcttt-------------------------ggcctGAGCCCTGGTGTC-GAACTAATGG
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2003615 642 -   2157725 tttttcttt-------ttt-tttttttttAAAGATAGAATCTTGCTCTGTTCAggctggatgcagtggctcatgcctataatctcagcactatgggaggctgaggcgggcggatcgcttgatgtcaggag-ttcagaccagcctggcctgtgt-ggggaaaattttgtattttctactaaaaatacaaaaattagctgggcgccatggtgtgcgcctgtagtcccagctactcgggaggctaaggcaggacaattgcttgaacctgggggcggagactgcagtgagctgagatcgcaccgctgcactccagcctgggtgacagaatgagactcttgtctcaaa-----------aaacaaacaaacaaaaaacaaac--aaaaaaAAtcttgctctgtttcctaggctggattgtggtgacacaatgatagctcattgcagcctggacccttggtgctcaagtgatccttccaactcagcctcctaggtagctgggaccacagatgcatgccactgtgtccaggtaattttgaaatgtttttgtagtgatgaggtctcaccatggtgttcaggctggtttggaactcctgggctcaagcaatcctcctgcttgggcctccc-aactgctgggaatacaggcctgagccctggtgcc-aggcTAATGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28439666 632 -  71996105 GTTGTTTTT-------TTT-----------AAGATAGAATCTTGCTCTGTTCAggccggatgcagtggctcatgcctataatcccagcactatgggaggctgaggcgggtggatcacttgatgtcaggag-ttcagaccagcctggcctgtgt-ggggaaaattttgtattttctactaaaaatacaaaaattagctgggcgccatggtgtgcgcctgtagtcccagctgctcgggaggctaaggcaggacaattgcttgaacctgggggcggagactgcagtgagctgagatcacaccgctgcactgcagcctgggtgacagaatgagactcttgtctcaaa-----------aaacaaacaaacaaaaaacaaac--aaaaaaAAtcttgctcagtttcctaggctggagtgtggtgacacaatgatagctcattgcagcctggacctctggtgctcaagtgatccttccaactcagcctcctaggtagctgggaccacagatgcatgccactgtgtccaggtaatttttaaatgtttttgtagtgatgaggtctcaccatggtgttcaggctggtttggaactcctgggctcaagcagtcctcctgcttgggcctccc-aactgctgggaatacaggcctgagccctggtgcc-aggcTAATGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2146252 643 +   2316924 tttttcttt-------tttttttttttttAAAGATAGAATCTTGCTCTGTTCAggctggatgcagtggctcatgcctataatctcagcactatgggaggctgaggcgggcggatcgcttgatgtcaggag-ttcagaccagcctggcctgtgt-ggggaaaattttgtattttctactaaaaatacaaaaattagctgggcgccatggtgtgcgcctgtagtcccagctactcgggaggctaaggcaggacaattgcttgaacctgggggcggagactgcagtgagctgagatcgcaccgctgcactccagcctgggtgacagaatgagactcttgtctcaaa-----------aaacaaacaaacaaaaaacaaac--aaaaaaAAtcttgttctgtttcctaggctggattgtggtgacacaatgatagctcattgcagcctggacccttggtgctcaagtgatccttccaactcagcctcctaggtagctgggaccacagatgcatgccactgtgtccaggtaattttgaaatgtttttgtagtgatgaggtctcaccatggtgttcaggctggtttggaactcctgggctcaagcaatcctcctgcttgggcctccc-aactgctgggaatacaggcctgagccctggtgcc-aggcTAATGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2011961 648 -   3067355 TTTTTTTTT-------TTT-TT--------AAGATAGAATCTTGCTCTGTTCAggccggatgcagtggctcatgcctataatcccagcactatgggaggctgaggaaggcagatcacttgatgtcaggag-ttcagaccagcctggcctatgt-ggggaacattttgtattttctactaaaaatagaaaaattagctgggtgccatggtgtgcacctgtagtcccagctacttgggaggctaaagcaggacaattgcttgaacctgggggcagagactgcagtgagttgagatcgcaccactgcactccagcctgggcaacagaatgagactcttgtctcaaaaacaaacaaacaaacaaacaaacaaataaaaaacaaaAAAAAAAActtgctctgttgcctaggctggagtgtggtgacacaatgatagctcattgcagcctggacctctggtgcccaagtgattcttccaactcagcctcctaggtagctgggaccacagatgcacaccactgtgtccgggtaatttttaaatgtttttgtagtgatgaggtctcaccgtgttgttcaggctggtttggaactcctgggctcaagcaatcctcctgctttggcctccc-aactgctgggaatacaggcctgagccTTGGTGCCAAGGCTAATGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171534194 594 - 171630274 ----------------TAT-TATTTTTCCGGATATACAATCTTGCACTGTT--ggccggatgctgtggctcatgcctgtaatcccagcactttgggaggctgaggcgggtgaatctcttgaggtcaggagttccagaccagcct-gccaacat-ggggaaaattttgtattttctactaaaaatacagaagttggtcgggcacc-tggtgcgcgcctgtagttccaggtactggaagggctgaggcaggagaatcgcttgaacctgggggcggaggctgcagtgagtcaagatcgcaccactgcactc------------cagAAT----------TTCCaaa-----------a-------------aaaaaaaaa--aaaaaaagccttgctctgttgcgtaggctggagtgcggtgacgcaataacggctcattgcagcctggacctccagtgcttaagtgatactcccaactcagcctcctgagtagctgggaccacggatgcacgccactgtgcccaggtaatctttacacttttttgtacagatgaggtctcaccatgtttttc-ggctggtttggaactcctgggctcaagcagtcctcccgctttggcctcccaaactgccggggttacaggcttgagccCTGATGCC--GGCTAATGA
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            170653   0 -    302817 C
e canFam3.chr35             26019175   0 +  26524999 C
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e macFas5.chr4             141734772  68 + 170955103 I
e rheMac8.chr4              29478486   6 + 172585720 I

a score=48289.000000
s hg38.chr6_GL000254v2_alt    295098 17 +   4827813 CTGAATTAGTTTAAACG
s panTro5.chr6              29270255 17 + 175400573 CTGAATTAGTTTAAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29516442 17 + 173848474 CTGAATTAGTTTAAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5313373 17 +   6154872 CTGAATTAGTTTAAACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74319944 17 + 122973662 CTGAATTAGTTTAAACA
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2004257 11 -   2157725 -TGAA-----TTAAACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28440298 11 -  71996105 -TGAA-----TTAAACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2146895 11 +   2316924 -TGAA-----TTAAACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2012609 11 -   3067355 -TGAA-----TTAAACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171534788 17 - 171630274 CTGAATTAGTTTAAACA
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26019175 17 +  26524999 CTGAATTAGTTTATACa
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790            170653  0 -    302817 C
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696  6 -   2996164 I
e macFas5.chr4             141734772 68 + 170955103 I
e rheMac8.chr4              29478486  6 + 172585720 I

a score=1526078.000000
s hg38.chr6_GL000254v2_alt    295115 392 +   4827813 TTTTTTCTGCTGATAATT----------------------TCTGACCACGAAATTCAGACCTACCATACTTTACATTTATAGTGTCCTTGAGGCCATGGAAT-AGAAACCTCATTTGT---TTC--TGGTA-TATAGTAAAACAAGGGGAAGATAGATCATTTATA-TATGTCATTGTTATAAGTGTTTCAGTTAGAACAGAATAATGTTATAATCATAAAGAAGGAAATGTTATCA-----AGTAGTATGAGATAGAGGTGTAGTTTTTCACAGCACAAAAATGGAAATC-----TAATTAATAAGTGTCCAG--------------TTTTTTTATTTTT-CGCAATAGGTTGTCAACTAAGGAATG--atagtgcttcattgcacagattctgaactcaaagtccctggcatcaaattccagcttcaccacttggaagc--tgtatcct
s panTro5.chr6              29270272 393 + 175400573 TTTTTTCTGCTGATAATT----------------------TCTGACCACGAAATTCAGACCTACCATACTTTACATTTATAGTGTCCTTGAGGCCATGGAAT-TGAAACCTCATTTGT---TTC--TGGTA-TATAGTAAAACAAGGGGAAGATAGATCATTTATA-TATGTCATTGTTATAAGTGTTTCAGTTAGAACATAATAATGTTATAATCATAAAGAAGGAAATGTTATCA-----AGTAGTATGAGATAGAGGTGTAGTTTTTCACAGCACAAAAATGGAAATC-----TAATTAATGAGTGTCCAA-------------TTTTTTTTATTTTT-TGCAATAGATTGTCAACTAAGGAATG--atagtgcttcattgcacagattctgaactcaaagtccctggcatcaaattccagcttcaccacttggaagc--tgtatcct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29516459 392 + 173848474 TTTTTTCTGCTGATAATT----------------------TCTGACCACGAAATTCAGACCTACCATACTTTACATTTATAGTGTCCTTGAGGCCATGGAAT-TGAAACCTCATTTGT---TTC--TGGTA-TATAGTAAAACAAGGGGAAGATAGATCATTTATA-TATGTCATTGTTATAAGTGTTTCAGTTAGAACATAATAATGTTGTAATCATAAAGAAGGAAATGTTATCA-----AGTAGTATGAGATAGAGGTGTAGTTTTTCACAGCACAAAAATGGAAATC-----TAATTAATGAGTGTCCAA--------------TTTTTTTATTTTT-TGCAATAGATTGTCAACTAAGGAATG--atagtgcttcattgcacagattctgaactcaaagtccctggcatcaaattccagcttcaccacttggaagc--tgtatcct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5313390 387 +   6154872 TTTTTTCTGCTGATAATT----------------------TCTGACCACGAAATTCAGACCTACCATACTTTACATTTATAGTGTCCTTGAGGCCATGGAAT-AGAAACCTCATTTGT---TTC--TGGTA-TATAGTAAAACAAGGGGAAGATAGATCATTTATA-TATGTCATTGTTATAAGTGTTTCAGTTAGAACATAATAATGTTATAATCATAAAGAAGGAAATGTTATCA-----AGTAGTATGAGATAGAGGTGTAGTTTTTCACAGCACAAAAATGGAAATC---------TAATGAGTGTCCAG--------------TTTTTTTATTTTT--GCAATAGGTTGTCAACTAAGGAATG--atagtgcttcattgcacagattctgaactcaaagtccctggcatcaaattccagcttcaccacttggaagc--tgtatcct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74319961 396 + 122973662 TTTTTTCTGCTGATAATT----------------------TCTGACCACGAAATTCAGACCTACCATACTTTACATTTATAGTGTCCTTGAGGCCATGGAAT-AGAAACCTCATTTGT---TTC--TGGTA-TATAGTAAAATAAGGGGGAGATAGATCATTTATAGTATGTCATTGTTATAAGTGTTTCAGTTAGAAC---ATAATGTTATAATCATAAAGAAGGAAATGTTATCA-----AGTAGTATGAGATAGAGATGTAGTTTTTCACAGCACAGAAGTGGAAATC---------TAATGAGTGTCCAG----GTTTCTTATTTATTTGTATTTTT-TGCAATAGGTTGTCAACTAAGGAATA--atagtgcttcattgcatagattctgaactcaaagttcctggcatcaaattccagcttcaccacttggaggc--tgtatcct
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2004268 407 -   2157725 TTTTTTCTGCTGATAATT----------------------TCTGACCACAAAATTCAGAAGTAGCATACTTTACATTTATAGTGTCCTTGAGGCCATG------AAAACCTCATTTGC---TTC--TGGTA-TATAGTAAAATAAAGGGAAGATAGATTATCTATAGTATGTCATTGTTATAATTGTTTTCGTTAGAATATAATAATGTTATAATCATAAAGAAGGAAATGTTATCA-----AGTAGTATGAGATAGAGATGTAGTTTTTCACAGCACAGAAATGGAAATCTGATTTAATCAATGAGTGTCCAGTTTTATTTTTTATTTATTTTTATTATT-TGCAATAGGTTGTCAACTAAGGAATG--atagtgcttcaatgcacagattctgaactcaaagtccctggcatcaaattccagcttcaccacttggaagc--tgtatcct
i cerAty1.NW_012001495v1   C 0 I 1378
s chlSab2.chr17             28440309 407 -  71996105 TTTTTTCTGCTGATAATT----------------------TCTGACCACAAAATTCAGAAGTAGCATACTTTACATTTATAGTGTCCTTGAGGCCATG------AAAACCTCATTTGC---TTC--TGGTA-TATAGTAAAATAAAGGGAAGATAGATTATCTATAGTATGTCATTGTTATAATTGTTTACATTAGAACATAATAATGTTATAATCATAAAGAAGGAAATGTTATCA-----AGTAGTATGAGATAGAGATGTAGTTTTTCACAGCACAAAAATGGAAATCTGATTTAATCAATGAGTGTCCAGTTTTATTTTTTATTTATTTTTATTATT-TGCAATAGGTTGTCAACTAAGGAATG--atagcgcctcaatgcacagattctgaactcaaagtccctggcatcaaattccagcttcaccacttggaagc--tgtatcct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2146906 407 +   2316924 TTTTTTCTGCTGATAATT----------------------TCTGACCACAAAATTCAGAAGTAGCATACTTTACATTTATAGTGTCCTTGAGGCCATG------AAAACCTCATTTGC---TTC--TGGTA-TATAGTAAAATAAAGGGAAGATAGATTATCTATAGTATGTCATTGTTATAATTGTTTTCGTTAGAACATAATAATGTTATAATCATAAAGAAGGAAATGTTATCA-----AGTAGTATGAGATAGAGATGTAGTTTTTCACAGCACAGAAATGGAAATCTGATTTAATCAATGAGTGTCCAGTTTTATTTTTTATTTATTTTTATTATT-TGCAATAGGTTGTCAACTAAGGAATG--atagtgcttcaatgcacagattctgaactcaaagtccctggcatcaaattccagcttcaccacttggaagc--tgtatcct
i manLeu1.NW_012104165v1   C 0 I 1442
s colAng1.NW_012115566v1     2012620 407 -   3067355 TTTTTTCTGCTGATAATA----------------------TCTGACCACAAAATTCAGACGTAGCATACTTTACATTTATAGTGTCCTTGAGGCCATG------GAAACCTCATTTGC---TTC--TGGTA-TATAGTAAAATAAAGGGAAGATAGATTATCTATAGTATGTCTTTGTTATAAGTGTTTTAGTTAGAACATAATAATGTTATAATCATAAAGAAGGAAATGTTATCA-----GGTAGTATGAGATAGAGATGTAGTTTTTCACAGCACAAAAATGGAAATCTGATTTAATTAATGAGTGTCCAGTtttattttttatttatttttgttatt-tGCAATAGATTGTCAACTAAGGAATG--atagtgcttcaatgcacagattctgaactcaaagtccctggcatcaaattccagcttcaccacttggaagc--tgtatcct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171534805 394 - 171630274 -TTTTTCGACTGATAATT----------------------TCTGGCCATGAAATTCAGACCTAGCGTACTTTACATTTATGGTGTTCTTGAGGCCACTGAAT-AGAAACCTGATTTGC---TTC--AGGTA-TATAGGAAAATAA-GGGAAGACAGATGATCTACAGTATGTCATTGTTATAAGCGTTTTAGTTAGAACTTAATAATGTTATAATCATAAA----GAAATGTTATCA-----AGTAATATGAGATAGAGATGTGGTTTTTCACAGCACAGAAATGGAAATCTAATTTAATTAATGAGTGTCCAGTTTTATTTTCTATTATTTATTGTTTTTTTGCAATAGATTGTCAACTAAGGAatgatatagtgctgcggtgtgcagattctgaactcaaagtccctggcaccaaatcccagcctcaccatt-----------------
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26019192 399 +  26524999 ttttttatttttttagtttaaaaatgttttatgaatataatatGACCATGAAATTCTGACCTAGGGTGCTTTATATTCATAGCGTGTTTGGGACCAAGGGATAAAAAACCATAATTGCAGTTTCAATGAAA-TATGGTA-----------------GTTACCTACAGTATATCATTGCTATTAGCAGGTTAGTTAGAACATGAAAATCTTATAATCAT---GAAGGAACTGTTATTACCATTATTATTATGAGATTTGGATATAGTTTTCCTCATTACA-ATATGGAGATTTAATTTAG-TAATGCGAATT-------------------------TTTTA-TGTGGTAGGAGGTTGGCTAAGTTGGg-catagtgcttaagagcaaagactctaaacccagag--cttggtgtcaaatcccagcttcattactgggaggtagcgtgtccc
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            170653 339 -    302817 TTTTCAATTCAGATAATT----------------------CCTGATTAC------------------ATTGTATTTATATATTCTCTTTGGTGTTAAAGAAA--ATAACTTGATT------TTC--TGAAGTTATAGTAAAGTGA---------AGATAAACTGTAGTATATTGTTGTTGTAAGGATTTTAAGTA-AACat-tttatattataattataaaGAAGGGTCTGTTTTTACT---GGTAGTGTGAGATAGAGACGTGGTTTTAT-CAATACAAAAATGCAAATT-----TAATT-----GTGTCCAC---------------------TTTTTA-TGTAGTAGGATTTCAGTTAAGTCA-A--ATGTTGCT------------CTTTTTGTccagaatgcctaggatcaaatcccagagtcaccgcttagaagctctgcttcct
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e macFas5.chr4             141734772  68 + 170955103 I
e rheMac8.chr4              29478486   6 + 172585720 I

a score=2985527.000000
s hg38.chr6_GL000254v2_alt    295507 677 +   4827813 tgggcaattatttaacttgtttgtgtaggaggttctttatacatgaagaaaatataataaaatttccttcctcaaagggatgttgtgagggttaatatttataaaagcacttggaactgagcttggttcatctttaattctaaaaatgataacctatATTCACCTGTC--------ATTGTTATTCTGTCTACCCCTTAGTCCATTAATTTTTCACACTAGTGATTTTACCGCAATGACCTAGAACTAAACTGGAATGTTTTTTA----AAAAATTTGTGTAACTTT---AAAATTTAGAAACATTTTTATATACACAAAAATATGCAGAATCACAATATGCACATTGAACTGAAAAGCTTCAGGAGCAGGAGATGAC------TTGAGGTCTCCAAATGCTTTGATTAAAAAATTCACTCAAATTCTTTTGAC----TGCTGTTGGGTTTGTGTTGGGAAttaaaaggtcat-g-aatttcaaagtggaaaaaaacctcagaagtcatgaatctagccttctgctctgcataggagatccttcaacagaatcgctacacagctgctactggcataacttcagtgacagggaagtcaattacacttgaagcagcctctctcctttagtcaatgc-----------tgcttatattg--aactcaaagatgattcct----t---gcccagccctggct-gattttctttattctgaaaataacac
s panTro5.chr6              29270665 677 + 175400573 tgggcaattatttaacttgtttgtgtaggaggttctttatacatgaagaaaatataataaaatttccttcctcaaagggatgttgtgagggttagtatttataaaagcacttggaactgagcttggttcatctttaattctaaaaatgataacctatATTCACCTATC--------ATTGTTATTCTGTCTACCCCTTAGTCCATTAATTTTTCACACTAGTGATTTTACCGCAATGACCTAGAACTAAACTGGAATGTTTTTTT----AAAAATTTGTGTAACTTT---AAAATTTAGAAACATTTTTATATACACAAAAATATGCAGAATCACAATATGCACATTGAACTGAAAAGCTTCAGGAGCAGGAGATGAC------TAGAGGTCTCCAAATGCTTTGATTAAAAAATTCACTCAAATTCTTTTGAC----TGCTGTTGGGTTTGTGTTGGGAAttaaaaggtcat-g-aatttcaaagtggaaaaaaacctcagaagtcatgaatctagccttctgctctgcataggagatccttcaacagaatctctacacagctgctactggcataacttcagtgacagggaagtcaattacacttgaagcagcctctctcctttagtcaatgc-----------tgcttatattg--aactcaaagatgattcct----t---gcccagccctggct-gattttctttattctgaaaataacac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29516851 677 + 173848474 tgggcaattatttaacttgtttgtgtaggaggttctttatacatgaagaaaatataataaaatttccttcctcaaagggatgttgtgagggttagtatttataaaagcacttggaactgagcttggttcatctttaattctaaaaatgataacctatATTCACCTATC--------ATTGTTATTCTGTCTACCCCTTAGTCCATTAATTTTTCACACTAGTGATTTTACCGCAATGACCTAGAACTAAACTGGAATGTTTTTTA----AAAAATTTGTGTAACTTT---AAAATTTAGAAACATTTTTATATACACAAAAATATGCAGAATCACAATATGCACATTGAACTGAAAAGCTTCAGGAGCAGGAGATGAC------TTGAGGTCTCCAAATGCTTTGATTAAAAAATTCACTCAAATTCTTTTGAC----TGCTGTTGGGTTTGTGTTGGGAAttaaaaggtcat-g-aatttcaaagtggaaaaaaacctcagaagtcatgaatctagccttctgctctgcataggagatccttcaacagaatctctacacagctgctactggcataacttcagtgacagggaagtcaattacacttgaagcagcctctctcctttagtcaatgc-----------tgcttatattg--aactcaaagatgattcct----t---gcccagccctggct-gattttctttattctgaaaataacac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5313777 677 +   6154872 tgggcaattatttaacttgtttgtgtaggaggttctttatacatgaagaaaatgtaataaaatttccttcctcaaagggatgttgtgagggttagtatttataaaagcacttggaactgagcttggttcatCTTTAATTATAAAAATGATAACCTATATTCACCTATA--------ATTGTTATTCTGTCTACCCCTTAGTCCATTAATTTTTCACACTAGTGATTTTACCGCAATGACCTAGAACTAAACTGGAATGTTTTTTA----AAAAATTTGTGTAACTTT---AAAATTTAGAAACATTTTTATATACACAAAAATATGCAGAATCACAATATGCACATTGAACTGAAAAGCTTCAGGAGCAGGAGATGAC------TTGAGGTCTCCAAATGCTTTGATTAAAAAATTCACTCAAATTCTTTTGAC----TGCTGTTGGGTTTGTGTTGGGAAttaaaaggtcat-g-aatttcaaagtggaaaaaaacctcagaagtcatgaatctagccttctgcgctgcataggagatccttcaacagaatctctacacagctgctactggcataacttcagtgacagggaagtcaattacacttgaagcagcctctctcctttagtcaatgc-----------tgcttatattg--aactcaaagatgattcct----t---gcccagccctggct-gattttctttattctgaaaataacac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74320357 674 + 122973662 tgggcaattacttaacttgtttgtgtaggaggttctttatacaggaagaaaat---ataaaattttcttcctcaaagggatgttgtgagagttagtatttataaaagcacttggaactgagcttggttcatctttaattctaaaaatgataacctatATTCACCTATC--------ATTGTTATTCTGTCTACCCCTTAGTCCATCAATTTTTCACACTAGTGATTTTGCCACAGTGACCTAGAACTAAACTGGAATGTTTTTAA----AAAAATTTGTGTAACTTT---AAAATTTAGAAAC--TTTTATATACACAAAAATATGCAGAATCACAATATGCACGTTGAACTGAAAAGCTTCAGGAGCAGGAGATGAC------TTGAGGTCTCCAAATGCTTTGATTACAAAATTCACTCAAATTTCTTTGAC----TGCTGTTGGGTTTGTGTTGAGAAttaaaaggtcat-g-aatttcaaagtggaaaaaaacctcagaagtcatgaatctagccttctgctctgcataggagatccttcaacagaatctctacacagctgctaatggcataacttcagtgacagggaagtcaattacacttgaagcagcctctctcctttagtcaatgc-----------tgcttatATTGTAAAGTCAAAGATGGTTCCT----T---GCCCAGCCCTGGCT-GGTTTTCTTTATTCTGAAAATAACAC
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2006053 676 -   2157725 tgggcaattatttaacttgtttgtgtaccaggttctttatacatgaagaaaatgtagtaaaatttccttcctcaaagggatgttgtgagggttagtatttataaaagcacttggaactgagcttggttcatatttaattctaaaaatgataactTATATCCACCTATC--------ATTGTTATTCTGCCTACCCCTTAGTCCATTACTTTTTCACAC-AGTGATTTTACCACAGTGACCTAGAACTAAACTGGAATGTTTTACA----AAAAATTTGTGTAACTTT---AAAATTTACAAACATTTTTATGTACACAAAAATATGCAGAATCACAATGtgcacattgaactgaaaagcttcaggagcaggagatgac------ttgaggtctccaaacactttgattacaaaaTTCACTCAAGTTCCTTTGAC----TGCTGTTGGGTTTGTGTTGGGAATTAAAAGGTTAT-g-aatttcaaagtggaaaaaaacctcagaagtcatgaatctagccttctgctctgcataggagatccttcaacagaatctctacacaaatgctactggcataacttcaatgacagagaagtcaaatacacttgaagcagcctctctcctttagtcaatgc-----------tgcttatattg--aactcaaagatggttcct----t---gcccagccgtggct-ggtcttctttattctgaaaataacac
i cerAty1.NW_012001495v1   I 1378 C 0
s chlSab2.chr17             28440716 677 -  71996105 tgggcaattatttaacttgtttgtgtgccaggttctttatacatgaagaaaatgtagtaaaatttccttcctcaaagggatgttgtgagggttagtatttataaaagcacttggaactgagtttggttcataTTTAATTCTAAAAATGATAACTTATATCCACCTATC--------ATTGTTATTCTGCCTACCCATTAGTCCATTAATTTTTCACAC-AGTGATTTTACCACAGTGACCTAGAACTAAACTGGAATGTTTTACA----AAAAATTTCTGTAACTTT---AAAATTTACAAACATTTTTATGTACACAAAAATATGCAGAATCACAATGTGCACATTGAACTGAAAAGCTTCAGGAGCAGGAGATGAC------TTGAGGTCTCCAAACACTTTGATTACAAAATTCACTCAAGTTCCTTTGAC----TGCTGTTGGGTTTGTGTTGGGAATTAAAAGGTTAT-g-aatttcaaagtggaataaaacctcagaagtcatgaatctagccttctgctctgcataggagatccttcaacagaatctctacacaactgctactggcataacttcagtgacagagaagtcaaatacacttgaagcagcctctctcctttagtcaatgc----------ttgcttatattg--aactcaaagatggttcct----t---gcccagccatggct-ggtcttctttattctgaaaataacac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2148755 676 +   2316924 tgggcaattatttaacttgtttgtgtaccagattctttatacatgaagaaaatgtagtaaaatttccttcctcaaagggatgttgtgagggttagtatttataaaagcacttggaactgagcttggttcatatttaattctaaaaatgataactTATATCCACCTATC--------ATTGTTATTCTGCCTACCCCTTAGTCCATTAATTTTTCACAC-AGTGATTTTACCACAGTGACCTAGAACTAAACTGGAATGCTTTACA----AAAAATTTGTGTAGCTTT---AAAATTTACAAACATTTTTATGTACACAAAAATATGCAGAATCACAATGtgcacattgaactgaaaagcttcaggagcaggagatgac------ttgaggtctccaaacactttgattacaaaaTTCACTCAAGTTCCTTTGAC----TGCTGTTGGGTTTGTGTTGGGAATTAAAAGGTTAT-g-aatttcaaagtggaaaaaaacctcagaagtcatgaatctagccttctgctctgcataggagatccttcaacagaatctctgcacaactgccactggcataacttcaatgacagagaagtcaaatacacttgaagcagcctctcttctttagtcaatgc-----------tgcttatattg--aactcaaagatggttcct----t---gcccagccgtggct-ggtcttctttattctgaaaataacac
i manLeu1.NW_012104165v1   I 1442 C 0
s colAng1.NW_012115566v1     2013027 672 -   3067355 tgggcaattatttaacttgtttgtgtaccaggttcttcatacatgaagaaaatgtagtaaaatttccttcctcaaagggatgttgtgaggcttagtatttataaaagcacttggaactgagcttgtttcatatttaattctaaaaatgataacctatATCCACCT-----------ATTGTTATTCTGTCTACTCCTTAGTCCATTAATTTTTCACAC-AGTGATTTTACCACAGTGACCTAGAACTAAACTGGAATGTTTTA-A----AAAAATGTGTGTAACTTT---AAAATTTACAAACATTTTTATGTACACAAAAATATGCAGAATCACAATGtgcacattgaactgaaaagcttcaggagcaggagatgac------ttgaggtctccaaacactttgattacaaaaTTCACTCAAGTTCCTTTGAC----TGCTGTTAGGTTTGTGTTGGGAAttaaaaggtcat-g-aatttcaaagtggaaaaaaacctcagaagtcatgaatctagccttctgctctgcataggagatccttcaacagaatctctacacaactgctgctgtcataacttcaatgacagagaagtcaattacacttgaagcagcctctctcctttagtcaatgc-----------tgcttatattg--aactcaaagatggttcct----t---gcccagccgtagct-ggttttctttattctgaaaataacac
i colAng1.NW_012115566v1   C 0 I 140
s calJac3.chr4             171535199 655 - 171630274 tgggcaattatttaacttgtttgtgtaccaggttctttatggatgacgagaatataataaaatttccttcctcaacgggatgttgtgagggttaGTATTTACGAAA-------GAACTGAGCTTGGTTCA-GTTTAATTCTAAAAACGATAATCTATATCCACCTATC--------ATTGTTATTCTGCCTACTCCTTAGTCCCTTTGTTTTTCACACTAGTGATTTTATTGCAATGACCTAGAACTAAAC-----TGTTTTTTT----AAAAATTTGGGTAACTTT---AAAATTTAGAAACATATTTATGAACACAAAAATATGCGGAATCACAATGTGCACATCG-------AAACTTCAGGAGCAGGAGATGAC------TTGAGGTCTCCAAATGCTTTGATTACAAAATTCACTCAAGTTCCTTTGAC----TGCTGTTGGGTTTGTGTTGGGAATTAAAAGGTCAT-g-aattttagagtagaaataaacctcagaagccatgaatctagtcttctgctctgcagaggagatccttca--agagtctttacacaactaccactggcatcatttccatgacagggaagtcaattacacttgaagcaggctctctcctttaagcaatgc-----------ctgtcctattg--aactcaaagatgctccct----t---gcccagtcctggct-gtttttctttattctgaaaagaacac
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26019591 661 +  26524999 tgggcagttatgtaacctctttgtgcaccagattctctgtgtgttcagtgatgataataa------tttcctgaaagggaggtggtgagggttagtatttgtgaaagcactaggaattgtgcttcgttcatatttaattctcaaAATTA-AAATTGTATTCATCTATCTA------CACATTATTCTTTTCACTCCTTACTGTTTTCATTATTCATAC-TTTGATTTTACCATGATGGTCTAGAACTAAACTGGGATAGTTAACA--TCTCATGTTTGCATAACTTTTCAAAAGCACAGACAC----TCATGTACACAAAAGTGCCCATAAGCATGATGTACCTACTGAACTGATAAAC-CCAGAGGTAGGAGAGGATAGAGGACTTAGTTCCCAACATGCCTTGATTACAAAATGCACTTGGGGTTCTTTGACCATGTAAGTTTGGGAGAGTGTTTGGAAttaaaaggccatag-gatttaagagttgaaataga-ctcagaaaccatg-atccatccttctgctcctGA-AGGAGGTCTTCCA-CAGAATGTTCACACAGTTCCTGTTCTCAGAGCGTTA-TGGC------------TGTCCTTTGATCTGTGCCTCATCCCTA-------C-----------tctttatgttg--agctcagagatgcctctc----taacatccaggcactggt-tcttttcctttttctggaaataacat
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            170992 701 -    302817 agggcagttaattaacctgtttgtac-ccaagccctttatgtgtaaagtgaagataataagagtccctccttccgagggaggttgtgaagagcagtgtttgtgaaagcactaggaattgttcttggTTCCTGCAAAATTCTAAAAATTATAAACTGTATCCATCTACCAGCAAAACATTGTTAGTCTGTTTAC-CCTTATTCCCTTCATTTTTCACAC-TATGATTTTACCATGATGGCTTAGACCTAAATAGAGGTTTTCTTCCCCTCTTAATTTTGAGTAA--TT---AAAAAAAAAGCACAAGCGAATGTACCCCCAAATCCATACTAACACAATGCACTCATTGAATTGATAAACCTCACTGGT-GGAGATGCC------TTTATCTTCCCAGAGGCCTTGATTAAAAAGTGCACTTGACTTTTTCTGATCAT-TATTTTTGGAATAATGTTGGGAAttaaaaggccat-acaattttagggttgaaatggacctcaaaagccacaaatccagccttccaccttgcataggaaatcactccgcagaatatccacacaacttgtatttacataacttcagagacaga-aaatccatcatacctgaagcaatctctttcctttaatcggtgccttttacttactttttatatta--agctcaaggatggtccttgtgac---accagggtacagctcccttttctttactctggaaataaca-
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e macFas5.chr4             141734772  68 + 170955103 I
e rheMac8.chr4              29478486   6 + 172585720 I

a score=1289251.000000
s hg38.chr6_GL000254v2_alt    296184 328 +   4827813 agagtaagtcAATTTAACATGGCCTCATAAAAACCCCAGTATTATTATATG-------AAC-AGTGCA----TGGATAC--------------Aacaaat----------------------------------------aa-----aaagtaaag----------------cttgg------------tgagtttcagtgtatattcttgtaacta--tcacctaaatcaataa----------ataaaacattga---------------------------------tgattaccctag---gagcttttctttgtgccttttaccaatgataactcttccctatcccctgaagtatccactatgctgctatttatagtaatcccctctttgcatgttagtaggttaattacccaaatgtgcacctctagacaatattgtatagtttggcttACTAAAAATTTTTTATATAC
s panTro5.chr6              29271342 328 + 175400573 agagtaagtcAATTTAACATGGCCTCATAAAAACCCCAGTATTATTATATG-------AAC-AGTGCA----TGGATAC--------------Aacaaat----------------------------------------aa-----aaagtaaag----------------cttgg------------tgagtttcagtgtatattcttgtaacta--tcacctaaatcaataa----------ataaaacattga---------------------------------tgattaccctag---gagcttttctttgtgccttttaccaatgataactcttccctatcccctgaagtatccactatgctgctatttatagtaatcccctctttgcatgttagtaggttaattacccaaatgtgcacctctagacaatattgtatagtttggcttACTAAAAATTTTTTATATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29517528 328 + 173848474 agagtaagtcAATTTAACATGGCCTCATAAAAACCCCAGTATTATTATATG-------AAC-AGTGCA----TGGATAC--------------Aacaaat----------------------------------------aa-----aaagtaaag----------------cttgg------------tgagtttcagtgtatattcttgtaacta--tcacctaaatcaataa----------ataaaacattga---------------------------------tgattaccctag---gagcttttctttgtgccttttaccaatgataactcttccctatcccctgaagtatccactatgctgctatttatagtaatcccctctttgcatgttagtaggttaattacccaaatgtgcacctctagacaatattgtatagtttggcttACTAAAAATTTTTTATATAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5314454 327 +   6154872 agagtaagtcAATTTAACATGGCCTCATAAAAACCCCAGTATTATTATATG-------AAC-AGTGCA----TGGATAC--------------AACAAAT----------------------------------------AA-----AAAGTAAAG----------------CTTGG------------TGAGTTTCAGTGTATATT-Ttgtaacta--tcacctaaatcaataa----------ataaaacattga---------------------------------tgattaccctag---gagcttttcttggtgccttttaccaatgataactcttccctatcccctgaagtatccactatgctgctatttatagtaatcccctctttgcatgttagtaggttaattacccaaatgtgcacctctagacaatattgtatagtttggcttACTAAAAATTTTTTATATAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74321031 324 + 122973662 AGAGCAAGTCAATTTAACATGGCCTCATAAAAACCCCAG---TATTATATG-------AAT-AATGCA----TGGATAC--------------AACAAAC----------------------------------------AA-----AAAGTAAAG----------------CTTGG------------TGAGTTTCagtgtatattcttgtaacta--t-acctaagtcaataa----------accaaacattga---------------------------------tgattaccctag---gagcttttctttgtgccttttaccaatgataactcttccctctcccctgaagtatccaccatgctgctatttatagtaatcccctctttgcatgttagtaggttaattacccaaatgtgcacctctagacaatattgtatagtttggcttACTAAAAATTTTTTATATAC
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2006729 326 -   2157725 agagtaagtcAACTTAACATGGCCTCATAAAATCCCCAGTATTGTTATATG-------AATAAATACA----TGGATAC--------------AACAAAC----------------------------------------AA-----AAAgtaaag----------------cctga------------tgagtttcagtgtata---ttgtaacca--tcacctaagtcaataa----------ataaaaagttga---------------------------------cgattaccctag---gagcttttctttgtgccttctcccaatgataactcttccctatcccctgaactatccactatgctgatatttatagtaatcccgtctttgcatgttagtaggttaattacccaaatgtgcacctctaggcaatattgtatagtttggcttACTAAAAACTTTTTATATAC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28441393 329 -  71996105 agagtatgtcAATTTAACATGGCCTCATAAAACCCCCAGTATTGTTATATG-------AATAAATACA----TGGATAC--------------AACAAAC----------------------------------------AA-----AAAgtaaag----------------cctga------------tgagtttcagtgtatattcttgtaacca--tcacctaagtcaataa----------ataaaacgttga---------------------------------cgattaccctag---gagcttttctttgtgccttctcccaatgataactcttccctatcccctgaagtatccactatgctgatatttatagtaatcccgtccttgcatgttagtaggttaattacccaaatgtgcacctctagacaatattgtatagtttggcttACTAAAAATTTTTTATATAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2149431 329 +   2316924 agagtaagtcAACTTAACATGGCCTCATAAAACCCCCAGTATTGTTATATG-------AATAAATACA----TGGATAC--------------AACAAAC----------------------------------------AA-----AAAgtaaag----------------cctga------------tgagtttcagtgtatattcttgtaacca--tcacctaagtcaataa----------ataaaacgttga---------------------------------cgattactctag---gagcttttctttgtgccttctcccaatgttaactcttccctatcccctgaagtatccactatgctgatatttatagtaatcccgtctttgcatgttagtaggttaattacccaaatgtgcacctctaggcaatattgtatagtttggcttACTAAAAATTTTTTATATAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2013839 329 -   3067355 agAGTAAATCAATTTAACATGGCCTCATAAAACCCCCAGTATTGTTATATG-------AATAAATACA----TAGATAC--------------AACAAAC----------------------------------------AA-----AAAgtaaag----------------cctga------------tgaggttcagtgtatattcttgtaacta--tcacctaagtcaataa----------ataaaacattga---------------------------------cgattaccctag---gagtttttctttgtgccttctcccagtgataactcttccctatcccctgaagtattcactatgctgatatttatagtaatcccctctttgcatgttagtaggttaattacccaaatgtgcacctctagacaatattgtatagtttggcttCCTAAAAATTTTTTATATAC
i colAng1.NW_012115566v1   I 140 C 0
s calJac3.chr4             171535854 326 - 171630274 agagtaagtcAATTTAACGTGGCATAGTAAAAACCCCAGtattattatacc-------aat-aacaca----tggatac--------------aacaaac----------------------------------------aa-----aagataaag----------------cttga------------tgagcttcaatgaatattcttgtaacta--tcacgcaagtcaataa----------ataaaaccttga---------------------------------tgattaccttat---gcgcttttcttcatgcctcatcccaatgacagcgcttccttatcccctgaagtatccattacgctgatatttatagtaatctcctctttgcatgttagtaggttaattacccaaatttgcatctctagacagtattgtatagtttGG-TTACTAAAAA-TTTTTATATGC
i calJac3.chr4             C 0 I 478
s canFam3.chr35             26020252 452 +  26524999 ggaataagtcaattcAACATGGTTTCATTAAAAGAACAGTTTTTTTTTTTAATTCAATAac-agaaca----tagagactcctaactctgggaaacgaactaggggtggtggaaggggaggagggcggggggtgggggtgaa-----tgagtgaagggcactgaggggggcacttgaggggatgagcaccgagtgttattctttatgttggcaaatc--gaacaccaataaaaaataaatttattataaaaCATAGATATAGAAAAAAGTAAAAGCTTAATGAGTTAAGGTGAATATTCT------TGCTTCTTTTTGTGCCTTG-ACCAATCAttacccctcgtt----cccaatggatccactatattagtgtttatagtaatcacctccttgtattttaataccttgataatgaaaatatgcatctgtagataatattgtttagtctAACTCATTAAAAATTGTGTACATGT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            171693 291 -    302817 -gagtaaatttattttatatggcttcactaaaaat---gtttTATTATA-G-------AAT-AAAACATGACTGAAAAC--------------AAAACCC----------------------------------------AAAAATGAAAGTACAG----------------CTTAA------------TGAGTTTAGGTGAATATTCTTGCAAGTACCTCGCCT--------------------GCAGCCTCCTGG---------------------------------TCTCCATCTCAGTCCAAGCTTTTCT--------------------------------GCCCTCAAAGTCTCCAGCAC-CAGAGTTTTCTATCACTCACCTCCCTGCAGTTTTCAAGTTTAATTACCTACATGTGGATCCCTA--CCACATTGTTCAGTTTGGCTTATGAAAAA-TTTTGATTTGT
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e macFas5.chr4             141734772  68 + 170955103 I
e rheMac8.chr4              29478486   6 + 172585720 I

a score=923604.000000
s hg38.chr6_GL000254v2_alt    296512 235 +   4827813 CTTTTAACTctcttttaatattagaaactgttaccaaatatatgcttagatttctcttcccaga---caaagcaca-----ttgttagctgttcctaccactacatgctcttttattaccatgctttttcttgttgctct-ccctggacacaccatgatttgtcaagtgctgcaaattagtgagtataaaagtaagcacgatactccacttatgcaacactactgaagagaa-tagtgaatgtct
s panTro5.chr6              29271670 229 + 175400573 CTTTTaa--ctcttttaatattagaatctgttaccaaatatatgcttagatttctcttcccaga---caaagcaca-----ttgttagctgttcctaccactacatgctcttttattaccatgctttttcttgttgctct-ccctggacacaccatgatttgtcaagtgctgcaaatt----agtataaaagtaagcacgatactccacttatgcaacactactgaagagaa-tagtgaatgtct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29517856 233 + 173848474 CTTTTaa--ctcttttaatattagaatctgttaccaaatatatgcttagatttctcttcccaga---caaagcaca-----ttgttagctgttcctaccactacatgctcttttattaccatgctttttcttgttgctct-ccctggacacaccatgatttgtcaagtgctgcaaattagtgagtataaaagtaagcacgatactccacttatgcaacactactgaagagaa-tagtgaatgtct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5314781 235 +   6154872 CTTTTAACTctcttttaatattagaatctgttaccaaatatatgctcagatttctcttcccaga---caaagcaca-----ttgttagctgctcctaccactacatgctcttttattaccatgctttttcttgttgctct-ccctggacacaccatgatttgtcaagtgctgcaaattagtgagtataaaagtaagcacgatactccacttatgcaacactactgaagagaa-tagtgaatgtct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74321355 231 + 122973662 CTTTTAAGTCTCTTTTAATCTTAGAATCTATTACCAAATATATGcttagatttctcttcccaga---caaagcaca-----ttgttagctgttcctaccgctacatgctgttttattaccatgc-ttttctcattattctcccccggacacaccatgatttgtcaagtgctgcaaatt----agtataaaagtaagcacgatactccacttatgcaacactactgaagagaa-tagtgaatgtct
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2007055 230 -   2157725 CTTTTAACTctcttttaatattagaatctattacc-aatatacgcttagatttctcttcc-------caaagcaca-----ttgttagctgttcctaccactacatgctctttaattaccatgc-ttttctcgttgctcttccctgaacacaccatgatttgtcaagtgctgcaaattagtgagtacaaaagtaagcatgatactccacttgtgcaacactactgaagagaa-tagtgaatgtct
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28441722 230 -  71996105 CTTTTAACTctcttttaatattagaatctattacc-aatatatgcttagatttctcttcc-------caaagcaca-----ttgttagctgttcctaccactacatgctctttaattaccatgc-ttttctcgttgctcttccctgaacacaccatgatttgtcaagtgctgcaaattagtgagtacaaaagtaagcacgatactccacttgtgcaacactactgaagggaa-tagtgaatgtct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2149760 230 +   2316924 CTTTTAACTctcttttaatattagaatctattacc-aatatacgcttagatttctcttcc-------caaagcaca-----ttgttagctgttcctaccactacatgctctttaattaccatgc-ttttctcgttcctcttccctgaacacaccatgatttgtcaagtgctgcaaattagtgagtacaaaagtaagcacgatactccacttgtgcaacactactgaagagaa-tagtgaatgtct
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2014168 234 -   3067355 CTTTTAACTctcttttaatgttagaatctattacc-aatatacgcttagatttctcttcccaga---caaagcaca-----ttgttagctgttcctaccactacgtgctctttaattaccatgc-ttttctcgttgctcttccctgaacacaccatgatttgtcaagtgctgcaaattagtgagtacaaaagtaagtacgatactccacttgtgcaacactactgaagagaa-tagtgaatgtct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171536658 223 - 171630274 CTTTTAAGTCTCTTTCAATGTAAGAACCTATTACC-AATATGTGcttagatttctcttctgaga---caaagcaca-----ttgttagctgttcctaccactacatgctcttttattaccacgc-ttttctggtcgctctcccctg----------gatttgtcaagtgctgcagattagtgagtataaaagtaagcacgatactcaacttgtgcaacgctactgaagagaa-tagtgaat-tct
i calJac3.chr4             I 478 C 0
s canFam3.chr35             26020704 164 +  26524999 CTTTTGAGT-TCCCTTAATATTAGAACCTATTATCAAATGCACTCTTCGGTTTATGTTTCCAGA---CTACCTGTATATGGTTATCAGCTATTGCTAACTGTGTATA---TTTAATTACCATGC-TTttctggttgctatccattgcactcaccatggtttat-------------------------------------------------------------------------tgaatgtct
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            171984 233 -    302817 CTTTCAAGTCTCTTTTAATATTATAATCTCTTAACAAACATACTCTTAGAATTCCCTTCCTGGATTCTGTAGAGTG-----CTGATAACTG-TCCCAACACT-CATGATCTTT-ATTTCCATTC--Tttctggttgatatattttggacacaccatg-tgtatcaaactccttcaagtagtaag-atagaaatgaacacaagattccaggtgtgctccattactgaaaaaaattagtgaacgtct
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e macFas5.chr4             141734772  68 + 170955103 I
e rheMac8.chr4              29478486   6 + 172585720 I

a score=596212.000000
s hg38.chr6_GL000254v2_alt    296747 142 +   4827813 atgatctgcata-attttctaaaatatacgttggttatttttagcaggtataagacattactggctctctttaaactttggatcacgtaaagccctaggca-ttcttattagaaatgctgccaagtcaggcatgacaatttatg
s panTro5.chr6              29271899 142 + 175400573 atgatctgcata-attttctaaaatatacgttggttatttttagcaggtataagacattactggctctctttaaactttggatcacgtaaagcccttggca-ttcttattagaaatgctgccaagtcaggcatgataatttatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29518089 142 + 173848474 atgatctgcata-attttctaaaatatacgttggttatttttagcaggtataagacattactggctctctttaaactttggatcacgtaaagcccttggca-ttcttattagaaatgctgccaagtcaggcatgataatttatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5315016 142 +   6154872 atgatctgcata-attttctaaaatatacgttggttatttttagcaggtataagacattactggctctctttaaactttggatcacgtaaagccctaggca-ttcttattagaaatgctgccaagtcaggcatgataatttatg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74321586 142 + 122973662 atgatccacata-attttctaaaatatacgttggttatttttagcaggtagaagacattactggctctctttaaactttggatcacgtaaagccctaggca-ttcttattagaaatgctgccaagtcaggcatgataatttatg
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2007285 142 -   2157725 atgatctgcata-attttctaaaatatacattaattatttttagcaggtataaaacattactggctctctttaaactttggatcacgtaaagccctggcca-ttcttattagaaatgctgccaagtcaggcatgataatttatg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28441952 142 -  71996105 atgaactgcata-attttccaaaatatacattaattatttttagcaggtataaaacattactggctctctttaaactttggatcacgtaaagccctggcca-ttcttattagaaatgctgccaagtcaggcatgataatttatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2149990 142 +   2316924 atgatctgcata-attttctaaaatatacattaattatttttagcaggtataaaacattactggctctctttaaactttggatcacgtaaagctctggcca-ttcttattagaaatgctgccaagtcaggcatgataatttatg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2014402 142 -   3067355 atgatctgcata-attttctaaaatatacatcaattatttttagcaggtgtaaaacattactggctctctataaactttggatcacgcaaagccctggcca-ttcttattagaaatgctgccaagtcaggcatgataatttatg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171536881 142 - 171630274 aggatctgcata-cttttctaaaatatacgttagttatttttagcaggtgtaaaacattaccggctctctttaaattttggatcatgtaaagccctaagta-ttcttattagaaatgctgtcaagccaggcatgataatttatg
i calJac3.chr4             C 0 C 0
s dasNov3.JH561790            172217 139 -    302817 aaaatctgtgcacattttctgatacatgtgttagccatttttagca-gtgaaacatataactggttcaattttagctttacatcacaaaaggcccctgatattttttattagaaatgttgcca----aggaattattctctatg
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             26020868   0 +  26524999 C
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e macFas5.chr4             141734772  68 + 170955103 I
e rheMac8.chr4              29478486   6 + 172585720 I

a score=233114.000000
s hg38.chr6_GL000254v2_alt    296889 57 +   4827813 tagtttaatgttgtgaactcaaatacaggacttttcatttaatacttttt-aacattt
s panTro5.chr6              29272041 57 + 175400573 tagttcaatgttgtgaactcaaatacaggacttttcatttaatacttttt-aacattt
i panTro5.chr6             C 0 I 7
s panPan2.chr6              29518231 57 + 173848474 tagttcaatgttgtgaactcaaatacaggacttttcatttaatacttttt-aacattt
i panPan2.chr6             C 0 I 7
s gorGor5.CYUI01015250v1     5315158 56 +   6154872 tagtttaatgttgtgaactcaaatacaggacttttcatttaatac-tttt-aacattt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74321728 57 + 122973662 tagtttaatgttgtgaactcaaatacaggacttttcatttaatacttttt-aacattt
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2007427 56 -   2157725 taatttaatgttgtgaactcaaatacaggacttttcatttaatacttttt--acattt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28442094 57 -  71996105 taatttaatgttgtgaactcaaatacaggacttttcatttaatacttttt-aacattt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2150132 57 +   2316924 taatttaatgttgtgaactcaaatacaggacttttcatttaatacttttt-aacattt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2014544 57 -   3067355 taatttaatgttgtgaactcaaatacaggacttttcatttaatacttttt-aacattt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171537023 57 - 171630274 tagtttaatgttgtgaactcaaatacaggacttttcatttaatacttttt-aacattt
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26020868 10 +  26524999 tggattagtg------------------------------------------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            172356 57 -    302817 tgaattactattgcaaacccaaatacaggacttttcattt-atacttttaaaACATTT
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696  6 -   2996164 I
e macFas5.chr4             141734772 68 + 170955103 I
e rheMac8.chr4              29478486  6 + 172585720 I

a score=224995.000000
s hg38.chr6_GL000254v2_alt    296946 107 +   4827813 -----tcatattgatttaagcTTTGGATCTCAAAC--CAGATatt-tta--atttcaatttaaaagtgaatgtgttatttgaaATGAGACTTACAACACTCCAGCTGAAGAAATAGA
s gorGor5.CYUI01015250v1     5315214 103 +   6154872 -----tcatattgatttaagcTTTGGATCTCAAAC--CAGATatt-tta--atttcaatttaaaagtgaatgtgttatttgaaATGAGAC----AACACTCCAGCTGAAGAAATAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74321785 103 + 122973662 -----tcatattgatttaagcTTGGGATCTCAAAC--CAGATatt-tta--atttcaatttaaaagtgaatgtgttatttgaaATGAGAC----AACACTCGAGCTGAAGAAATAGA
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2007483 109 -   2157725 -----gcatattgatttaagctttggatctcaaacttcggatatt-tta--atttcaattTAAAAGTGAATGTGTTATTTAAAATGAGACTTATAACACTGGAGCTGAAGAAATAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28442151 109 -  71996105 -----gcatattgATTTAAGCTTTGAATCTCAAACTTTGGATATT-TTA--ATTTCAATTTAAAAGTGAATGTGTTATTTAAAATGAGACTTATAACACTGGAGCTGAAGAAATAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2150189 109 +   2316924 -----gcatattgatttaagctttggatctcaaacttcggatatt-tta--atttcaattTAAAAGTGAATGTGTTATTTAAAATGAGACTTATAACACTGGAGCTGAAGAAATAGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2014601 109 -   3067355 -----tcatattgatttaagcTTTGGATCTCAAACTTTGGATATT-TTA--ATTTCAATTTAAAAGTGAATGTGTTATTTAAAATGAGACTTATAACACTGGAACTGAAGAAATAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171537080 104 - 171630274 -----tcatattaatttaagctttggctctcaaacttcagatatt-tta--atttcaattTAAAAGTGAATGTGTTATTTAAAATGAGAC----AACATCAGAGATGAAGAAATAG-
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26020878  36 +  26524999 --------------------------------------------------------agttgagaagtgaatacattacttcaggtgtgcttt-------------------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            172413 107 -    302817 TTTTTCCATAGAGATTT--------GTTCttaaattttagatattattaatattttaatataaaa-tGTATGTG-AAATAAAAATGAAATTTAGAGCAGTGGAGTTGAAGATATAGA
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e macFas5.chr4             141734772  68 + 170955103 I
e rheMac8.chr4              29478486   6 + 172585720 I
e panPan2.chr6              29518288   7 + 173848474 I
e panTro5.chr6              29272098   7 + 175400573 I

a score=846585.000000
s hg38.chr6_GL000254v2_alt    297053 179 +   4827813 TGGCAA---AAAAGAGGCATGCTACATTTTAATCGAAACTCAGTTTTTCATTTTTCATAGTATGGACTTCAGAGCCCAATAATCGCGCATAACTTAACATTTTGCTTTCTCCAGTGAAATCTGAGACAAATGAACC-AAACATATTTCAACATAATTT-----------ATGATATTGAGAGAAAATTAGAAGC
s panTro5.chr6              29272105 179 + 175400573 tgGCAA---AAAAGAGGCATGCTACATTTTAATCGAAACTCAGTTTTTCATTTTTCATAGTATGGACTTCAGAGCCCAATAATCGCGCATAACTTAACATTTTGCTTTCTTCAGTGAAATCTGAGACAAATGAACC-AAACATATTTCAACATAATTT-----------ATGATATGGAGAGAAAATTAGAAGC
i panTro5.chr6             I 7 C 0
s panPan2.chr6              29518295 179 + 173848474 tgGCAA---AAAAGAGGCATGCTACATTTTAATCGAAACTCAGTTTTTCATTTTTCATAGTATGGACTTCAGAGCCCAATAATCGCGCATAACTTAACATTTTGCTTTCTTCAGTGAAATCTGAGACAAATGAACC-AAACATATTTCAACATAATTT-----------ATGATATGGAGAGAAAATTAGAAGC
i panPan2.chr6             I 7 C 0
s gorGor5.CYUI01015250v1     5315317 179 +   6154872 TGGCAA---AAAAGAGGCATGCTACATTTTAATCGAAACTCAGTTTTTCGTTTTTCATAGTATGGACTTCAGAGCCCAATAATCGCGCATAACTTAACATTTTGCTTTCTTCAGTGAAATCTGAGACAAATGAACC-AAACATATTTCAACATAATTT-----------ATGATATGGAGAGAAAATTAGAAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74321888 178 + 122973662 TGGTAA---AAAAGAGGCATGCTACATTTTAATTGAAACTCAGTTTTTCATTTTTCATAGTATGGACTTCAGAGCCCAATAATCATGCATAACTGAACATTTTGCTTTCTTCAGTGAAATCTGAGACAAAAGAACC-CAACATATTTCAACATAATTT-----------ATGATATGGAGACAAAATT-GAAGC
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2007592 178 -   2157725 TGGCAA---AAAA-AGGCATGCTACATTTTAATGGAAACTCAGTTTTTCATTTTTCATAGTATGGACTTCAGAGCCCAATAATTGTGCATAACTTAACATTTTACTTTCTTCAGTGAAATCTGAGACAAATGAACC-AAACATATTTCAACATAATTT-----------ATGATATGGAGAGAAAATTAGAGGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28442260 179 -  71996105 TAGCAA---AAAAGAGGCATGCTACATTTTAATGGAAACTCAGTTTTTCATTTTTCACAGTATGGACTTCAGAGCCCAATAATCACGCATAACTTAACATTTTACTTTCTTCAGTGAAATCTGAGACAAATGAACC-AAACATATTTCAACATAATTT-----------ATGATATGGAGAGAAAATTAGAGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2150298 178 +   2316924 TGGCAA---AAAAGAGGCATGCTACATTTTAATGGAAACTCAGTTTTTCATTTTTCATAGTATGGACTTCAGAGCCCAATAATCGCGCATAACTT-ACATTTTACTTTCTTCAGTGAAATCTGAGACAAATGAACC-AAACATATTTCAACATAATTT-----------ATGATATGGAGAGAAAATTAGAGGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2014710 179 -   3067355 TGGCAA---AAAAGAGGCATGCTACATTTTAATAGAAACTCAGTTTTTCATTTTTCATAGTATGGACTTCAGAGCCCAATAATCGTGCATAACTTAACATTTTACTTTCTTCAGTGAAATCTGAGACAAATGAACC-AAACATATTTCAACATAATTT-----------ACGATATGGAGAGAAAATTAGAAGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171537184 188 - 171630274 TG--AA---AAAAGAGGCATGCTACATTTTCATCGAAACTTGGTTTTTCATTTTTCTTAGTATGGACTTCAGAGCCCAATAATCCAGCATAACTTAACATTTTACTTTCTTCAGTGAAATCTGGGACAAATAAACC-AAATATATTTTGTCATAATTTGGATGTACCTCATGATATGGAGAGTAAACTAGAAAC
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26020914 185 +  26524999 --gTAA---AAAAGAGGCATGTGATGTTTTCACTGAAA---AGGTTTTCATTTTTCACGGTATGGACTTCAGTTTCTAATAGCTTAGCTCAATTTTACATTTGACTTTGTTTAGTGAAATGTAAGACAAATGAAGC-AAACATACTTATATATAATTTCAACGTACATAATGATGTGGAGACAAAATTAGAAAC
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            172520 189 -    302817 ----AAGTTAAAAAAGGCATGTTACCTTTTAATTGAAACTCATTTATTCA-CTTTCATGGCATGGACTTCAGTTCCCAATAATATAGCATATTTTTGCATTTTATTTTCCTCAGCAAAATTTAATACAGATGAACCTAAACATATTTAAAACTAATTTGAATGTACATAATGGTAATAAGAGAAAATTAGGAAC
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696   6 -   2996164 I
e macFas5.chr4             141734772  68 + 170955103 I
e rheMac8.chr4              29478486   6 + 172585720 I

a score=315599.000000
s hg38.chr6_GL000254v2_alt    297232 82 +   4827813 ACAAAATTTCAAAACTGTCTAAAATTTTATAAAAAGTAAAAATAT-----ATGGATCTTTT----ATTATAAAGCATGAGGTATATTGCTG
s panTro5.chr6              29272284 82 + 175400573 ACAAAATTTCAAAACTGTCTAAAATTTTATAAAAAGTAAAAATAT-----ATGGATCTTTT----ATTATAAAGCAAGAGGTATATTGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29518474 82 + 173848474 ACAAAATTTCAAAACTGTCTAAAATTTTATAAAAAGTAAAAATAT-----ATGGATCTTTT----ATTATAAAGCAAGAGGTATATTGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5315496 82 +   6154872 ACAAAATTTCAAAACTGTCTAAAATTTTATAAAAAGTAAAAATAC-----ATGGATCTTTT----ATTATAAAGCATGAGGTATATTGCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74322066 80 + 122973662 ACAAAATTTCAAAACTG--TAAAATTTTATAAAAAGTAAAAATAT-----ATGGATCTTTT----ATTATAAAGCAAGAGGTATACTGCTG
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2007770 86 -   2157725 ACAAAATTTCAAAACTGTCAAAAATTTTACAAACAGTAAAAATAC-----ATGGATCTTTTATTAATTATGAAGCAAGAAGTATACTGCTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28442439 86 -  71996105 ACAAAATTTCAAAACTGTCTAAAATTTCACAAAAAGTAAAAATAT-----ATGGATCTTTTATTAATTATAAAGCAAGAAGTATACTGCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2150476 86 +   2316924 ACAAAATTTCAAAACTGTCTAAAATTTTACAAAAAGCAAAAATAC-----ATGGATCTTTTATTAATTATGAAGCAAGAAGTATACTGCTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2014889 86 -   3067355 ACAAAATTTCAAAACTGTCTAAAATTTTACAAAAAGTAAAAATAT-----ATGGATCTTTTATTAATTATAAAGCAAGAAGTATATTGCTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171537372 84 - 171630274 ACAAAATTTGAAAACTG--TAACATTTTATAAAATATAAAACTAT-----GTGGCTCTTTTATTAATTATAAAGCAAGGGGTATATTGCTG
i calJac3.chr4             C 0 C 0
s dasNov3.JH561790            172709 90 -    302817 ATTAAATATCACTGCTATATAGAATTTTGTAAAAGATAAAATTATCTAAAATTGATCTCTTACTCATTATAAA-TAAGGGGTATACTGCTT
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             26021099  0 +  26524999 C
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696  6 -   2996164 I
e macFas5.chr4             141734772 68 + 170955103 I
e rheMac8.chr4              29478486  6 + 172585720 I

a score=12012.000000
s hg38.chr6_GL000254v2_alt    297314 2 +   4827813 TA
s panTro5.chr6              29272366 2 + 175400573 TA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29518556 2 + 173848474 TA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5315578 2 +   6154872 TA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74322146 2 + 122973662 TA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29139604 2 - 170955103 tA
i macFas5.chr4             C 0 I 5
s cerAty1.NW_012001495v1     2007856 2 -   2157725 TA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28442525 2 -  71996105 TA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2150562 2 +   2316924 TA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2014975 2 -   3067355 TA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171537456 2 - 171630274 TA
i calJac3.chr4             C 0 C 0
s dasNov3.JH561790            172799 2 -    302817 TA
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             26021099 0 +  26524999 C
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2129696 6 -   2996164 I
e rheMac8.chr4              29478486 6 + 172585720 I

a score=206612.000000
s hg38.chr6_GL000254v2_alt    297316 32 +   4827813 GTCATACAAAATTCAAGATGAAAGGACGAAAT--
s panTro5.chr6              29272368 32 + 175400573 GTCATACAAAATTCAAGATGAAAGGACGGAGT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29518558 32 + 173848474 GTCATACAAAATTCAAGATGAAAGGACGGAGT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5315580 27 +   6154872 GTCATACAAAATTCAAGAT-----GACGAAAT--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74322148 32 + 122973662 GTCATACAAAATTCAAGATGAAAGGACGAAAT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29478492 32 + 172585720 GTCAAACAAAATTCAAGATGAAAGGGCGAAAT--
i rheMac8.chr4             I 6 C 0
s macFas5.chr4              29139611 32 - 170955103 GTCAAACAAAATTCAAGATGAAAGGGCGAAAT--
i macFas5.chr4             I 5 C 0
s macNem1.NW_012011356v1     2129702 32 -   2996164 GTCATACAAAATTCAAGATGAAAGGGCGAAAT--
i macNem1.NW_012011356v1   I 6 C 0
s cerAty1.NW_012001495v1     2007858 32 -   2157725 GTCATACAAAATTCAAGATGAAAGGACGAAAT--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28442527 32 -  71996105 GTCATACAAAATGCAAGATGAAAGGACGAAAT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2150564 32 +   2316924 GTCATACAAAATTCAAGATGAAAGGACGAAAT--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2014977 32 -   3067355 GTCATACAAAATTCAAGATGAAAGGACGAAAT--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171537458 32 - 171630274 GTCATACAAAATTCAAGATGAAGGGATGAAAT--
i calJac3.chr4             C 0 I 484
s dasNov3.JH561790            172801 34 -    302817 GCTATACAATGTCTAAGCAGAAAAAAGacaatat
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             26021099  0 +  26524999 C
e otoGar3.GL873742           1650795 7699 -   2232465 I

a score=3111413.000000
s hg38.chr6_GL000254v2_alt    297348 452 +   4827813 AAAaataggtaagaccctagact---ggttcagaccgcctgtgatttttgttacaattgatctcagccatttccttactctgtggacttgagcaggctaattaacttcttt-agcctctgattcctcatctgtaaaatagctattctaatagcacctgctttgtaggatggctatgaggaggattacatgctatgct-------aaatatttagcatgatgcttggtgcatagagagcattcagtaaCTTCAAAATCCACTAACTGCTCTTGTTGAAGTT-----TAATCCTCACTCCTGAGGATTAAATTTATATTTAATCCTCAAAATGTTAGTA-TTATTTATATCTCACATACCTTTCACATTTTTGCTTTCATGTTAGACTGAGTCTT-ACGCTATCTAGGATCTGTTTTCTACCTGGAGTCATCCTCTGTTAGAGATAGCAGAGAATACTTACCAGAAGCTGAA
s panTro5.chr6              29272400 452 + 175400573 AAAaataggtaagaccctagact---ggttcagaccgcctgtgatttttgttacaattgatctcagccatttccatactctgtggacttgagcaggctaattaacttcttt-agcctctgattcctcatctgtaaaatagctattctaatagcacctgctttgtaggatggctatgaggaggattacatgctatgct-------aaatatttagcatgatgcttggtgcatagagagcattcagtaaCTTCAAAATCCACTAACTGCTCTTGTTGAAGTT-----TAATCCTCACTCCTGAGGATTAAATTTATATTTAATCCTCAAAATGTTAGTA-TTATTTATATCTCACATACCTTTCACATTTTTGCTTTCATGTTAGACCGAGTCTT-ATGCTATCTAGGATCTGTTTTCTACCTGGAGTCATCCTCTGTTAGAGATAGCAGAGAATACTTACCAGAAGCTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29518590 452 + 173848474 AAAaataggtaagaccctagact---ggttcagaccgcctgtgatttttgttacaattgatctcagccatttccatactctgtggacttgagcaggctaattaacttcttt-agcctctgattcctcatctgtaaaatagctattctaatagcacctgctttgtaggatggctatgaggaggattacatgctatgct-------aaatatttagcatgatgcttggtgcatagagagcattcagtaaCTTCAAAATCCACTAACTGCTCTTGTTGAAGTT-----TAATCCTCACTCCTGAGGATTAAATTTATATTTAATCCTCAAAATGTTAGTA-TTATTTATATCTCACATACCTTTCACATTTTTGCTTTCATGTTAGACCGAGTCTT-ATGCTATCTAGGATCTGTTTTCTACCTGGAGTCATCCTCTGTTAGAGATAGCAGAGAATACTTACCAGAAGCTGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5315607 452 +   6154872 AAAaataggtaagaccctagact---ggttcagaccgcctgtgatttttgttacaattgatctcagccatttccttactctgtggacttgagcaggctaattaacttcttt-agcctcggattccttatctgtaaaatagctattctaatagcacctgctttgtaggatggctatgaggaggattacatgctatgct-------aaatatttagcatgatgcttggtgcatagagagcattcagtaaCTTCAAAATCCACTAACTGCTCTTGTTGAAGTT-----TAATCTTCACTCCTGAGGATTAAATTTATATTTAATCCTCAAAATGTTAGTG-TTATTTATATCTCACATACCTTTCACATTTTTGCTTTCATGTTAGACTGAGTCTT-ATGCTATCTAGGATCTGTTTTCTACCTGGAGTCATCCTCTGTTAGAGATAGCAGAGAATGCTTACCAGAAGCTGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74322180 400 + 122973662 AAAAATAGGCAAGACCCTAGACT---GGTTCAGACCGCGTGTGATTTTTGTTACAACTGATctcagccatttccttactgtgtgcacttgagcaggctaattaccttcttt-agcctctgattccgcatctgtaagatagctattctaatagcacctgctttgtaggatggctatgaggaggattacctgctatgct-------aaatatttagcatgatgcttggtgcgtagagagcattcagtaaCTTCAAAATCCAC-----------------------------------------------------TATTTAATCCTCAAAATGTTAG----TATTTATATCTCACATACCTTTCACATTTTTGCTTTCATGTTAGACTGAGTTTTAACGCTGTCTAGGATCTGTCTTCTACCTGGAGTCATC--GTGTTAGAGATAGCAGAGAATACTTACCAGAAGCCAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29478524 451 + 172585720 AAAaataggtaagaccctagact---ggttcagaccgcctgtgatttttgttgcaattgatctcagctatttcctcactgtgtgaacttgagcaggctaattaacttcttt-agcctctgattccttatctgtaaaatagctattctaatagcacctgc-ttataggatggctatgaagaggattacatgttaggct-------aaatatttagcatgatgcttggtgcttagagagcatttggtaaCTTCAAAATCCATCAACTGCTGTTGTTGAAGTT-----TAATCCTCACTCCTGAGGATTAAATTTATATTTAATCCTCAAAATGTTAGTA-TTATTTATATCTCACATACCTTTCACATTTTTGCTTTCACATTAGGCTGAGTCTT-ATGCTATCTAGGATCTGTTTTCTACCTGGAGTTATCGTCTGTTAGAGATAGCACAGAATACTTACCAGAAGCCGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29139643 451 - 170955103 AAAaataggtaagaccctagact---ggttcagaccgcctgtgatttttgttgcaattgatctcagccatttcctcactgtgtgaacttgagcaggctaattaacttcttt-agcctctgattccttatctgtaaaatagctattctaatagcacctgc-ttataggatggctatgaagaggattacatgttaggct-------aaatatttagcatgatgcttggtgcttagagagcatttggtaaCTTCAAAATCCATCAACTGCTGTTGTTGAAGTT-----TAATCCTCACTCCTGAGGATTAAATTTATATTTAATCCTCAAAATGTTAGTA-TTATTTATATCTCACATACCTTTCACATTTTTGCTTTCACATTAGGCTGAGTCTT-ATGCTATCTAGGATCTGTTTTCTACCTGGAGTCATCGTCTGTTAGAGATAGCACAGAATACTTACCAGAAGCCGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2129734 451 -   2996164 AAAaataggtaagaccctagact---ggttcagaccgcctgtgatttttgttgcaattgatctcagccatttcctcactgtgtgaacttgagcaggctaattaacttcttt-agcctctgattccttatctgtaaaatagctattctaatagcacctgc-ttataggatggctatgaagaggattacatgttatgct-------aaatatttagcatgatgcttggtgcttagagagcatttagtaaCTTCAAAATCCATGAACTGCTGTTGTTGAAGTT-----TAATCCTCACTCCTGAGGATTAAATTTATATTTAATCCTCAAAATGTTAGTA-TTATTTATATCTCACATACCTTTCACATTTTTGCTTTCACGTTAGGCTGAGTCTT-ATGCTATCTAGGATCTGTTTTCTACCTGGAGTCATCGTCTGTTAGAGATAGCACAGAATACTTACCAGAAGCCGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2007890 450 -   2157725 AAAaataggtaagaccctagact---ggtttagaccgcctgtgatttttgttacaattgatctcagccatttcctcactgtgtgaacttgagcaggctaattaacttcttt-agcctctgattccttatctgtaaaatagctattctaatagcacctgc-ttataggatggctatgaagaggattacatgttatgct-------aaatatttagcatgatgcttggtgcatagagagcatttagtaaCTTCAAAATCCATGAACTGCTCTTGTTGAAGTT-----TAATCCTCATTCCTGAGGATTAAATTTATATTTAATCCTCAAAATGTTAGTA-TTATTTATATCTCACATACCTTTCACATTTTTGCTTTCACGTTAGGCTGAGTCTT-ATGCTATCTAGGATCTGTTTTCTACC-GGAGTCATCCTCTGTTAGAGATAGCACAGAATACTTACCAGAAGCCAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28442559 451 -  71996105 AAAaataggtaagaccctagact---ggttcagaccgcctgtgatttttgttacaattgatctcagccatttcctcactgtgtgaacttgagcaggctaattaacttcttt-agcctctaattccttatctgtaaaatagctattctaatagcacctgc-ttataggatggctatgaagaggattacatgttatgct-------aaatatttagcatgatgcttggtgcatagagagcatttagtaaCTTCAAAATCCATGAACTGCTCTTGTTGAAGTT-----TAATCCTCATTCCTGAGGATTAAATTTATATTTAATCCTCAAAATGTTAGTA-TTATTTATATCTCACATACCTTTCACATTTTTGCTTTCACGTTAGGCTGAGTCTT-ATGCTATCTAGGATCTGTTTTCTACCTGGAGTCATCCTCTGTTAGAGATAGCACAGAATACTTACCAGAAGCCGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2150596 450 +   2316924 AAAaataggtaagaccctagact---ggttcagaccacctgtgatttttgttacaattgatctcagccatttcctcactgtgtgaacttgagcaggctaattaacttcttt-agcctctgattccttatctgtaaaatagctattctaatagcacctgc-ttataggatggctatgaagaggattacatgttatgct-------aaatatttagcatgatgcttggtgcatagagagcatttagtaaCTTCAAAATCCATGAACTGCTCTTGTTGAAGTT-----TAATCCTCATTCCTGAGGATTAAATTTATATTTAATCCTCAAAATGTTAGTA-TTATTTATATCTCACATACCTTTCACATTTTTGCTTTCACGTTAGGCTGAGTCTT-ATGCTATCTAGGATCTGTTTTCTACC-GGAGTCATCCTCTGTTAGAGATAGCACAGAATACTTACCAGAAGCCGAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2015009 452 -   3067355 AAAaataggtaagaccctagact---ggttcagaccgcctgtgatttttgttacaactgatctcagccatttcctcactgtgtgaacttgagcaggctaattaacttcttt-agcctctgattccttatctgtaaaatagctattctaatagcacctgctttgtaggatggctatgaagaggattacatgctatgct-------aaatatgtagcatgatgcttggtgcatagagagcatttagtaaCTTCAAAATCCACGAACTGCTCTTGTTGAAGTT-----TAATCCTCACTCCTGAGGATTAAATTTATATTTAATCCTCAAAATGTTAGTA-TTATTTATATCTCACATACCTTTCACATTTTTGCTTTCATGTTAGGCTGAGTCTT-ATGCTATCTAGGATCTATTTTCTACCTGGAGTCATCCTCTGTTAGAGATAGCACAGAATACTTACCAGAAGCCAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171537974 427 - 171630274 aaaaaaaaGtaagacactagact---ggttcagaccacctgtgg-ttttattacaattcatctcagctattttctcactgtgtgaacttgagcaggataattaacttcttt-agcctctgtttcctcatctgtaaaatagctgttctaatagtacctgctttgtaggatgtctatgaggagtattacatgctatactaagtataaaacatttagcatgattctttgtgcatagagagcattcagtaaCTTCAAAATCCACTAACTGCTCTTGTTGAAATT-----TAATTCTCA-------------------------------AATATGTTACTA-TTATTTATATTTCACATGTCTTTCACATTTTTGCTTTCATGTTAGACTGAGTCTT-ATGCTATCTAGGATCTGTTTTCTACCTGGACTCATCTTCTGTTAGAGATAGCAGAGAATATTTACCAGAATCTGAA
i calJac3.chr4             I 484 C 0
s dasNov3.JH561790            172835 421 -    302817 aaaaatagttaagaccccagactctggattcaggccacctgtgatttt-----------attacagccacttcctcattgcatgaacttggg-aagctaagtagcttctttcattctcagtttcctcatctgtaaaatccttattccagtagcatctgcttcatagtactgttgtga--------atattaaacata-------aaatatttagtatgattcttgacacaCTGAGTGCATGCAGGAACTTCAAAATCCATTGATTGTTCTGGTTGAAATTTAATATAATCTTTACTCCAGAGAG-------GGtatt---------aaatattaatatttatttatGTCTCACATACCTTTCAGGTTTTCCTTTTCATGTTAGACCGAGGTCT-AGCCTATCTATGATCTGACTTCTACC-----CCGTCTTCTGTTGGTGATAGCATAGAACACTTACCAGTAGCCAAA
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             26021099   0 +  26524999 C
e otoGar3.GL873742           1650795 7699 -   2232465 I

a score=4585985.000000
s hg38.chr6_GL000254v2_alt    297800 590 +   4827813 AAGATTAGAATATAT------TTTCAT----GAAGGAAGAATTCAGAGCTGTCATGTTCTCATGTAGTCCAAACATACCCATGTTCCCATTATGACGTTTCTTCATTTAATTAATAAATTAGAAAAA-AATTCTTGTTGGATGAGTTACTAATGCCCTGAAGAATTGGATTAACCAC----TGG----TCATACTGACACTACAGTGCCATTCACACTTAAATGCAACAGCTGAAATAAGATTTAATAGAAGTCTCTATTTAATGTGGATATTGGAAGTAAACTAAATGTGGGACTGGTGAAAATCCTTAAT-------TAGGTTTGGTTAAATATATTTTCGGTTGGCTATTTGATGTCTTTTTAATGT-ATACTC--TTGTTATTCATATTTACAGCTAGATTTTTGCCTAATTAAACAAGGAGAACACTGTGTTGGTCAATGTATATTCCAAGAATCATTAACATGTAGCAGGGAAGTATTTA-TTTACAGCTCTAAAGGCTACCTATGTTGATA-TGGTTTAGACCTTGAGGACTGATGCCCCACAGAGGTGATTAAG-TAAAGCTATGACTGTGGTCAGAGGCATATCCAAATAATAATTTCATGAAAAGTTCTCTT
s panTro5.chr6              29272852 594 + 175400573 AAGATTAGAATATAT------TTTCAT----GAAGGAAGAATTCACAGCTGTCATGTTCTCATGTAGTCCAAACATAACCATGTTCCCATTATGACGTTTCTTCATTTAATTAATAAATTAGAAAAG-AATTCTTGTTGGGTGAGTTACTAATGCCCTGAAGAATTGGATTAACCAC----TGG----TCATACTGACACTACAGTGCCATTCACACTTAAATGCAACAGCTGAAATAAGATTTAATAGAAGTCTCTATTTAATGTGGATATTGGAAGTAAACTAGATGTGGGACTGGTGAAAATCCTTAAT----AATTAGGTTTGGTTAAATATATTTTCGGTTGGCTATTTGATGTCTTTTTAATGTTATACTC--TTGTTATTCATATTTACCGCTAGATCTTTGCCTAATTAAACAAGGAGAACACTGTGTTGGTCAATGTATATTGCAAGAATCATTAACATGTAGCAGGGAAGTATTTA-TTTACAGCTCTAAAGGCTACCTATGTTGATA-TGGTTTAGACCTTGGGGACTGATGCCCCACAGAGGTGATTAAG-TAAAGCTATGACTATGGTCAGAGGCATATCCAAATAATAATTTCATGAAAAGTTCTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29519042 596 + 173848474 AAGATTAGAATATAT------TTTCAT----GAAGGAAGAATTCACAGCTGTCATGTTCTCATGTAGTCCAAACATAACCATGTTCCCATTATGACGTTTCTTCATTTAATTAATAAATTAGAAAAG-AATTCTTGTTGGGTGAGTTACTAATGCCCTGAAGAATTGGATTAACCAC----TGG----TCATACTGACACTACAGTGCCATTCACACTTAAATGCAACAGCTGAAATAAGATTTAATAGAAGTCTCTATTTAATGTGGATATTGGAAGTAAACTAGATGTGGGACTGGTGAAAATCCTTAAT----AATTAGGTTTGGTTAAATATATTTTCGGTTGGCTATTTGATGTCTTTTTAATGTTATACTCTTTTGTTATTCATATTTACAGCTAGATTTTTGCCTAATTAAACAAGGAGAACACTGTGTTGGTCAATGTATATTCCAAGAATCATTAACATGTAGCAGGGAAGTATTTA-TTTACAGCTCTAAAGGCTACCTATGTTGATA-TGGTTTAGACCTTGGGGACTGATGCCCCACAGAGGTGATTAAG-TAAAGCTATGACTGTGGTCAGAGGCATATCCAAATAATAATTTCATGAAAAGTTCTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5316059 593 +   6154872 AAGATTAGAATATAT------TTTCAT----GAAGGAAGAATTCACAGCTGTCATGTTCTCATGTAGTCCAAACATACCCATGTTCCCATTATGACGTTTCTTCATTTAATTAATAAATTAGAAAAA-AATTCTTGTTGGGTGAGTTACTAATGCCCTGAAGAATTGGATTAACCAC----TGG----TCATACTGACACTACGGTGCCATTCACACTTAAATGCAACAGCTGAAATAAGATTTAATAGAAGTCTCTATTTAATGTGGATATTGGAAGTAAACTAGATGTGGGACTGGTGAAAATCCTTACT----AATTAGGTTTGGTTAAATACATTTTCGGTTGGCTATTTGATGTCTTTTTAATGT-ATACTC--TTGTTATTCATATTTACAGCTAGATTTTTGCCTAATTAAACAAGGAGAACACTGTGTTGGTCAATGTATATTCCAAGAATCATTAACATGTAGCAGGGAAGTATTTA-TTTACAGCTCTAAAGGCTACCTATGTTGATA-TGGTTTAGACCTTGGGGACTGATGCCCCACAGAGGTGATTAAG-TAAAGCTATGACTGTGGTCAGAGGCATATCCAAATAATAATTTCATGAAAAGTTCTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74322580 599 + 122973662 AAGATTAGAATATAT------TTTCAT----GAAGGAAGAATTCACGGCTGTCATGTTCTCATGTAGTCCCAACATACCCATGTTCCCATTATGACGTTCCTTCATTTAATTAATAAATTAGAAAAA-AATTCTTGTTGGGTGAGTTACTAATGCCCTGAAGAATTGGATTAACCAC----TGG----TCATACTGACACTACAGTGCCATTCACACTTAAATGCAACAGCTGAAATAAGATTTAATAGAAGTCTCTATTTAATGTGGATATTGGAAGTAAACTAGATGTGGGACTGGTGAAAATCCCTAATAATGAATTAGGTTTGGTTAAATATATTTTTGGTTGGCTATTTGATGTCTTTTTAACGT-ATACTC--TTGTTATTCATATTTACAGCTAGATTTTTGCCTAATTAAACAAGGAGAGCACTATGTTGGTCAATGTATATTCCAAGAATCATTAACATATAGCAGGGATGTATTTCTTTTACAGCTCTAAAGGCTACCTATGTTGATA-CGGTTTAGACCTTGGGGACTGATGCCCCACAGAGGCGATTAAGTTAAAGCTATGACTGTGGTCAGAGGCATATCCAAATAATAATTTTATGAAAAGTTCTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29478975 598 + 172585720 AAGATTAGAATATAT------TTTCAT----GAAGGAAGAGTTCACAGCTGTGATGTTCTCCCGTAGTCCAAACATACCCATGTTCCCATTATGATGTTCCTTCATTTAATTAATAAATTAGAAAAAAAATTCTTGTTGGGTGAGTTACTAATGCCCCGAAAAATTGGATTAACCAC----TGG----TCATACTGACACTATAGTGCCATTCACACTTAAATGCAACAGCTGAAGTAAAATCTAATAGAAGGCTCTATTTAATGTGGATATTGGAAGTAAACTAGACGTGGGACTGGTGAAAGTCCCTAATAATGAATTAGGTTTGGTTAAATATATTTTTGGTTGGCTATTTGACGTCTTTTTAATGC-ATACTC--TTGTTATTCATATTTATAGCTAGATTTTTGCCTAATTAAACAAGGAGAGCACTATGTTGGTCAATGTATATTCCAAGAATCATTAACATGTAGCAGGGATGTATTTA-TTTACAGCTCTAAAGGCTACCTATGTTTATA-TGGTTTAGACCTTGGAGACTGATGCCTCACAGAGGTGATTAAG-CAAAGCTATGACTGTGGTCAGAGGCATATCCAAATAATAATTTTATGAAAAGTTCTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29140094 598 - 170955103 AAGATTAGAATATAT------TTTCAT----GAAGGAAGAGTTCACAGCTGTGATGTTCTCCCGTAGTCCAAACATACCCATGTTCCCATTATGATGTTCCTTCATTTAATTAATAAATTAGAAAAAAAATTCTTGTTGGGTGAGTTACTAATGCCCCGAAAAATTGGATTAACCAC----TGG----TCATACTGACACTACAGTGCCATTCACACTTAAATGCAACAGCTGAAGTAAAATTTAATAGAAGGCTCTATTTAATGTGGATATTGGAAGTAAACTAGACGTGGGACTGGTGAAAGTCCCTAATAATGAATTAGGTTTGGTTAAATATATTTTTGGTTGGCTATTTGACGTCTTTTTAATGC-ATACTC--TTGTTATTCATATTTATAGCTAGATTTTTGCCTAATTAAACAAGGAGAGCACTATGTTGGTCAATGTATATTCCAAGAATCATTAACATGTAGCAGGGATGTATTTA-TTTACAGCTCTAAAGGCTACCTATGTTTATA-TGGTTTAGACCTTGGAGACTGATGCCCCACAGAGGTGATTAAG-CAAAGCTATGACTGTGGTCAGAGGCATATCCAAATAATAATTTTATGAAAAGTTCTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2130185 598 -   2996164 AAGATTAGAATATAT------TTTCAT----GAAGGAAGAGTTCACAGCTGTGATGTTCTCCCGTAGTCCAAACATACCCATGTTCCCATTATGATGTTCCTTCATTTAATTAATAAATTAGAAAAAAAATTCTTGTTGGGTGAGTTACTAATGCCCCGAAAAATTGGATTAACCAC----TGG----TCATACTGACACTACAGTGCCATTCACACTTAAATGCAACAGCTGAAGTAAAATTTAATAGAAGGCTCTATTTAATGTGGATATTGGAAGTAAACTAGACGTGGGACTGGTGAAAGTCCCTAATAATGAATTAGGTTTGGTTAAATATATTTTTGGTTGGCTATTTGACGTCTTTTTAATGT-ATACTC--TTGTTATTCATATTTATAGCTAGATTTTTGCCTAATTAAACAAGGAGAGCACTATGTTGGTCAATGTATATTCCAAGAATCATTAACATGTAGCAGGGATGTATTTA-TTTACAGCTCTAAAGGCTACCTATGTTTATA-TGGTTTAGACCTTGGAGACTGATGCCCCACAGAGGTGATTAAG-CAAAGCTATGACTGTGGTCAGAGGCATATCCAAATAATAATTTTATGAAAAGTTCTCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2008340 598 -   2157725 AAGATTAGAATATAT------TTTCAT----GAAGGAAGAGTTCACAGCTGTGATGTTCTCCTGTAGTCCAAACATACCCATGTTCCCATTATGATGTTCCTTCATTTAATTAATAAATTAGAAAAAAAATTCTTGTTGGGTGAGTTACTAATGCCTCCAAAAATTGGATTAACCAC----TGG----TCATACTGACACTACAGTGCCATTCACACTTAAATGCAACAGCTGAAGTAAAATTTAATAGAAGGCTCTATTTAATGTGGATATTGGAAGTAAACTAGATGTGGGACTGGTGAAAGTCCCTAATAATGAATTAGGTTTGGTTAAATATATTTTTGGTTGGCTATTTGACGTCTTTTTAATGT-ATACTC--TTGTTATTCATATTTATAGCTAGATTTTTGCCTAATTAAACAAGGAGAGCACTATGTTGGTCAATGTATATTCCAAGAATCATTAACATGTAGCAGGGATGTATTTA-TTTACAGCTCTAAAGGCTACCTATGTTTATA-TGGTTTAGACCTTGGAGACTGATGCCCCACAGAGGTGATTAAG-CAAAGCTATGACTGTGGTCAGAGGCATATCCAAATAATAATTTTATGAAAAGTTCTCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28443010 598 -  71996105 AAGATTAGAATATAT------TTTCAT----GAAGGAAGAGTTCACAGCTGTGATGTTCTCCTGTAGTCCAAACATACCCATGTTCCCATTATGATGTTCCTTCATTTAATTAATAAATTAGAAAAAAAATTCTTGTTGGGTGAGTTACTAATGCCCCCAAAAATTGGATTAACCAC----TGG----TCATACTGACACTACAGTGCCATTCACACTTAAATGCAACAGCTGAAGTAAAATTTAATAGAAGGCTCTATTTAATGTGGATATTGGAAGTAAACTAGATGTGGGACTGGTGAAAGTCCCTAATAATGAATTAGGTTTGGTTAAATATATTTTTGGTTGGCTATTTGACGTCTTTTTAATGT-ATACTC--TTGTTATTCATATTTATAGCTAGATTTTTGCCTAATTAAAGAAGGAGAGCACTATGTTGGTCAATGTATATTCCAAGAATCATTAACATGTAGCAGGGATGTATTTA-TTTACAGCTCTAAAGGCTACCTATGTTTATA-TGGTTTAGACCTTGGAGACTGATGCCCCACAGAGGTGATTAAG-TAAAGCTATGACTGTGGTCAGAGGCATATCCAAATAATAATTTTATGAAAAGTTCTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2151046 598 +   2316924 AAGATTAGAATATAT------TTTCAT----GAAGGAAGAGTTCACAGCTGTGATGTTCTCCTGTAGTCCAAACATACCCATGTTCCCATTATGATGTTCCTTCATTTAATTAATAAATTAGAAAAAAAATTCTTGTTGGGTGAGTTACTAATGCCTCCAAAAATTGGATTAACCAC----TGG----TCATACTGACACTACAGTGCCATTCACACTTAAATGCAACAGCTGAAGTAAAATTTAATAGAAGGCTCTATTTAATGTGGATATTGGAAGTAAACTAGATGTGGGACTGGTGAAAGTCCCTAATAATGAATTAGGTTTGGTTAAATATATTTTTGGTTGGCTATTTGACGTCTTTTTAATGT-ATACTC--TTGTTATTCATATTTATAGCTAGATTTTTGCCTAATTAAACAAGGAGAGCACTATGTTGGTCAATGTATATTCCAAGAATCATTAACATGTAGCAGGGATGTATTTA-TTTACAGCTCTAAAGGCTACCTATGTTTATA-TGGTTTAGACCTTGGAGACTGATGCCCCACAGAGGTGATTAAG-CAAAGCTATGACTGTGGTCAGAGGCATATCCAAATAATAATTTTATGAAAAGTTCTCTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2015461 598 -   3067355 AAGATTAGAATATAT------TTTCAT----GAAGGAAGAGTTCACAGCTGTGATGTTCTCCTGTAGTCCAAACATACCCATATTCCCATTATGATGTTCCTTCATTTAATTAATAAATTAGAGAAACAATTCTTGTTGGGTGAGTTACTAATGCCCTGAAAAATTGGATTAACCAC----TGG----TCATACTGACATTACAGTGCCATTCACACTTAAATGCAACAGCTGAAGTAAAATTTAATAGAAGTCTCTATTTAATGTGGATATTGGAAGTAAACTAGATGTGGGACTGGTGAAAGTCCCTAATAATGAATTAGGTTTGGTTAAATATATTTTTGGCTGGCTATTTCATGTCTTTTTAATGT-ATACTC--TTGTTATTCATAGTTATAGCTAGATTTTTGCCTAATTAAACAAGGAGAGCACTATGTTGGTCAATGTATATTCCAAGAATCATTAACATGTAGCAGGGATGTATTTA-TTTACAGCTCTAAAGGCTACCTATGTTTATA-TGGTTTAGACCTTGGAGACTGATGCCCCACAGAGGTGATTAAG-CAAAGCTATGACTGTGATCAGAGGCATATCCAAATAATAATGTTATGAAAAGTTCTCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171538401 594 - 171630274 AAGACTAGAATCTAT------TTTCAA----GAAGGAAGAATTTGCAGCTGTCATGTTCTCATGTGGTCCAAACATACCCGTATTCCCATTATGATGTTCTTTCATTTAATTAGTAATTTAAAAAAA-AATTC--ATTGGGTGAGTTACTAATGCCCTGAGGAATTGGATTAACCAC----TGG----TTACACTGACACTACAATGCCATTCACACTTAAATGCAACAGCTGAAGTAAGAGTTAATAGAAGTCTCTATTTAATATGGATATTGGAAGTAAACTAGATGTGGTACTGGTGAAAGTCCCTAACAATGAATTAGGTTTGGTTAAATGTATTTTTGGTTGGTTACTTGCTGTCTTTTTAATGT-ATACTC--TTATTATTCATATTTATAGCTAGATTTTTGCCTAATTAAACAAGAAGAGCACAATGTTGGTCAATGTATATTCCAAGAATCATTAACATGCAGCAGGGATGTATTTA-TTTAAAGCTCTAAAGGCTACCTATGTTGATA-CTATTTAGACCTTGGGGACTGGTACC-CACAGAGGTGATTAAG-CAAAGCTAGGTCTATGGTCAGAGGCATATCTAAATAATAATTTCACGAAAAGTTCTCTT
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26021099 569 +  26524999 AAAACTAGAACATAT------TTACCTTTCGGAAGGAAGAATTCACAGCTATCTTG-TCTTTTGTAATTTAAAGGTACCTATATTCCCATTCTGATGAGCCTTCACTTCACAGGTAA-TCAGAAG---GATTCTGGTTTGGCAAGTTACTAAGTCCATGGAATACT-GATTAGCCACAACTTTG----TTGTACAAACACCATGATTATATTTGCATCGAAATGCAAAAGCTGACCTAAGATTCAGT-GAAGTTTCTATTTAATGTGGATGGAGGAGAGAAACTTGATGTGCAACTGGTAGAAA----AGTTGATGGATTTGGCTT-GTTAAATGTATTTTTGTTGGGATATTTGTAGTCTTTTC-ATGT-GGACTT--TTGTTAGACACATTTGTGGGTGGTTCTTTACCCAATTAAACCAGGAATGCCCTCTGTTGCTCTATGTGTGCTCCAAAAA---------------------GTGTTTA--TTAGGACTCCAAAGGCTA-GTATGTTAACA-GGGTGTAGACCATGGGGACTGGTGCTCCACAGAGATGATTAA--CAGGTCTTAGACTGAGGTCAGAGGCTTATCTAAACAACTATTTTAGAAAGATTTCCCTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            173256 591 -    302817 AAGATGAGACTATGTTTACAATTTCAT----GAGAGAAGAAATCACAGCTGTCATGCTCTCATGTAGTCCAAATGTACCCTTTTCCTCATCATGAAGGTCCTTCATTTCTTTGATAAGTCAGAAAAA-AATT-TTGTTGGGCACATTGCTAAG--TCTGACAAATTGGATTA-CCAC----CAGTTTCTTATACTGATACCATAGGCACAATCACATTTAAACACAACCCCTGAACAAATACTTAATAGAAGCCAATACTTAACATGGTTATTGAAGAAAAACTAGGTGTAGGACCGGCGGAGG----AGTTGATGGATTAGGGTTTGTTAAA-GTATTTTTGATGGG-TATTTTTCACCCTTT-AGTGT-AAATTC--TTACTAGACATGTCTACAGGTTGATTTC--CCTACTTAAACGCGGAGAGCACCACTTTGGTCATCGTGCTCTCTGAGAATCATTAATATGTA-CAGGGAGGCATTTA-TGTACAACTCTAAAAGCTAACTGTGTTGAGGTTGACTTAGACCTTGGGGACTGGTGCCC--CAAAGGTGATT-AG-CAAACCCATGGCTACGGACAGGAGCATATCCAAATCGCAGCTTTAAGACACTTTCCCTT
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1650795 7699 -   2232465 I

a score=91074.000000
s hg38.chr6_GL000254v2_alt    298390 14 +   4827813 AACACATTAGGTTT
s panTro5.chr6              29273446 14 + 175400573 AACACATTAGGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29519638 14 + 173848474 AACACATTAGGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5316652 14 +   6154872 TACACATTAGGTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74323179 14 + 122973662 AAGACATTAGGTTt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29479573 14 + 172585720 AAGACATTAGGTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29140692 14 - 170955103 AAGACATTAGGTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2130783 14 -   2996164 AAGACATTAGGTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2008938 14 -   2157725 AAGACATTAGGTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28443608 14 -  71996105 AAGACTTTAGGTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2151644 14 +   2316924 AAGACATTAGGTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2016059 14 -   3067355 ACAACATTAGGTTT
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35             26021668 14 +  26524999 CAGACATTGGATTT
i canFam3.chr35            C 0 I 9
s dasNov3.JH561790            173847 14 -    302817 AAGACATTGGGATT
i dasNov3.JH561790         C 0 C 0
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171538995  0 - 171630274 C

a score=2308.000000
s hg38.chr6_GL000254v2_alt    298404 1 +   4827813 C
s panTro5.chr6              29273460 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29519652 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5316666 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74323193 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29479587 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29140706 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2130797 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2008952 1 -   2157725 T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28443622 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2151658 1 +   2316924 T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2016073 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH561790            173861 1 -    302817 C
i dasNov3.JH561790         C 0 I 6931
e canFam3.chr35             26021682 9 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171538995 0 - 171630274 C

a score=96822.000000
s hg38.chr6_GL000254v2_alt    298405 17 +   4827813 ggccaggcacagtggtt
s panTro5.chr6              29273461 17 + 175400573 ggccaggcacagtggtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29519653 17 + 173848474 ggccaggcacagtggtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5316667 17 +   6154872 ggccaggcacagtggtt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74323194 17 + 122973662 ggccaggcgcggtggtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29479588 17 + 172585720 ggccaggcgcggtggct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29140707 17 - 170955103 ggccaggcgcggtggct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2130798 17 -   2996164 ggccaggcgcggtggct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2008953 17 -   2157725 ggccaggcgcggtggct
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28443623 17 -  71996105 ggccaggcgcggtggct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2151659 17 +   2316924 ggccaggcgcggtggct
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2016074 17 -   3067355 ggccaggcacggtggct
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            173862 6931 -    302817 I
e canFam3.chr35             26021682  9 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171538995  0 - 171630274 C

a score=637696.000000
s hg38.chr6_GL000254v2_alt    298422 134 +   4827813 catgcctgtaatcccagcactttgggaggccaaagcgggtggatcacctgaggtcaggagttcaagaccagcctgaccaatgtggagaaaccccgtctctactaaaa--acaaaaaattagccgggcatggtggtg
s panTro5.chr6              29273478 134 + 175400573 catgcctgtaatcccagcactttgggaggccaaagcgggtgtatcacctgaggttaggagttcaagaccagcctgaccaatgtggagaaaccccgtctctactaaaa--acaaaaaattagccgggcatggtggtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29519670 134 + 173848474 catgcctgtaatcccagcactttgggaggccaaagcgggtgtatcacctgaggttaggagttcaagaccagcctgaccaatgtggagaaaccccgtctctactaaaa--acaaaaaattagccgggcatggtggtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5316684 134 +   6154872 catgcctgtaatcccagcactttgggaggccaaagcgggtggatcacctgaggtcaggagttcaagaccagcctgaccaatgtggagaaaccccgtctctactaaaa--acaaaaaattagccgggcatggtggtg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29479605 136 + 172585720 cacacctgtaatcccagcactttgagaggccaaggcaggtggatcacctgaggttgggagttgaagaccagcctgaccaacgtggagaaaccctgtctctactaaaaatacaaaaaattagctgggtatggtggca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29140724 136 - 170955103 cacgcctgtaatcccagcactttgagaggccaaggcaggtggatcacctgaggttgggagttcaagaccagcctgaccaacgtggagaaaccctgtctctactaaaaatacaaaaaattagctgggtatggtggca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2130815 136 -   2996164 cacgcctgtaatcccagcactttgagaggccaaggcaggtggatcacctgaggttgggagttcaagaccagcctgaccaacgtggagaaaccctgtctctactaaaaatacaaaaaattagctgggtatggtggca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2008970 136 -   2157725 cacgcctgtaatcccagcactttgagaggccaaggcaggtggatcacctgaggttgggagttcaagaccagcctgaccaacgtggagaaaccctgtctctactaaaaatacaaaaaattagctgggcatggtggca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28443640 136 -  71996105 cacgcctgtaatctcagcacattgagaggccaaggcaggtggatcacctgaagttgggagttcaagaccagcctgaccaacgtggagaaaccctgtctctactaaaaatacaaaaaattagctgggcatggtggca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2151676 136 +   2316924 cacgcctgtaatcccagcactttgagaggccaaggcaggtggatcacctgaggttgggagttcaagaccagcctgaccaacgtggagaaaccctgtctctactaaaaatacaaaaaattagctgggcatggtggca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2016091 136 -   3067355 cacgcctgtaatcccagccctttgagaggccaaggcaggtggatcacctgaggtcgggagttcaagaccagcctgaccaacgtggagaaaccctgtctcaactaaaaatacaaaaaattagctgggcatggtggcg
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            173862 6931 -    302817 I
e canFam3.chr35             26021682   9 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171538995   0 - 171630274 C
e nomLeu3.chr1a             74323211   0 + 122973662 C

a score=755931.000000
s hg38.chr6_GL000254v2_alt    298556 156 +   4827813 catgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggagacgaaggttgcggtcagccgagattgcgccattgcactccggcctgtgaaac--gagcgaaactcttgtctcaaaaaa---aaaaaaaaa---aaaaaaaa--aaa
s panTro5.chr6              29273612 146 + 175400573 catgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggagacgaaggttgtggtcagccgagattgcgccattgcactctggcctgtgaaac--gagtgaaactct-gtctcaaaaaa---aaaaaaaaa---aa-----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29519804 144 + 173848474 catgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggagacgaaggttgcggtcagccgagattgcgccactgcactctggcctgtgaaac--gagcgaaactct-gtctcaaaaaa---aaaaaaaaa----------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5316818 142 +   6154872 catgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggagacgaaggttgcggtcagccgagattgcgccattgcactccggcctgtggaac--gagcgaaactcttgtctcaaaaaa---aaaaaa-------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74323211 142 + 122973662 catgcctgtaattccagctactcaggaggctgaggcaggagaatcacttgaacctgggagacgaaggttgcggtgagccgagattgcgccattgcactccggcctgtgaaac--gagcgaaact---gtctcaaaaaa---aaaaaaaaa----------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29479741 162 + 172585720 catgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggagacggaggttgtggtgagccgagattgcgccattgcactccagcctgtgcaacaagagcaaaactct-gtctcaaaaaaaacaaaaaaaac---caaaaaaaCCCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29140860 162 - 170955103 catgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggagacggaggttgtggtgagccgagattgcgccattgcactccagcctgtgcaacaagagcaaaactct-gtctcaaaaaaaacaaaaaaaac---caaaaaaaCCCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2130951 161 -   2996164 catgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggagacggaggttgcggtgagccgagattgcgccattgcactccagcctgtgcgacaagagcaaaactct-gtctcaaaaaaaa-aacaaaaaa---caaaaaaaCCCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2009106 160 -   2157725 catgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggagacggaggttgtggtgagccgagattgcgccattgtactccagcctgtgcaacaagagcaaaactct-gtctcaaaaaaa--aaaaaaaac---aaaaaaaaCACAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28443776 159 -  71996105 catgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggagatggaggttgcggtgagccaagattgcgccattgtactccagcctgtgcaacaagagcaaaactct-gtctcaaaaca---aaaaaaccc---aaaaaaaCCCCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2151812 162 +   2316924 catgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggagacgaaggttgtggtgagccgagattgcgccattgtactccagcctgtgcaacaagagcaaaactct-gtctcaaaaaa---aaaaaaaacgaaaaaaaaaaCCCAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2016227 146 -   3067355 catgcccgtaatcccagctactcaggaggctgagacaggagaatcacttgaacccaggagacagagtttgcggtgagccgagattttgccattgcactccagcctgtgcaacaagagcaaaactct-gtctcaaaaaa---aaaaaaaaG----------------
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            173862 6931 -    302817 I
e canFam3.chr35             26021682   9 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171538995   0 - 171630274 C

a score=56646.000000
s hg38.chr6_GL000254v2_alt    298712 11 +   4827813 aaGACGTTGGG
s panTro5.chr6              29273758  9 + 175400573 --GACGTTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29519948  9 + 173848474 --GACGTTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5316960  9 +   6154872 --GACGTTGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74323353  9 + 122973662 --GACGTTGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29479903 11 + 172585720 AAGACATTAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29141022 11 - 170955103 AAGACATTAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2131112 11 -   2996164 AAGACATTAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2009266 11 -   2157725 AAGACATTAGG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28443935 11 -  71996105 AAGACATTAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2151974 11 +   2316924 AAGACATTAGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2016373  8 -   3067355 ---ACATTAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171538995 11 - 171630274 AAGACATTAGG
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            173862 6931 -    302817 I
e canFam3.chr35             26021682  9 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I

a score=2779167.000000
s hg38.chr6_GL000254v2_alt    298723 420 +   4827813 TTTCATCTTTTCTTTTTCTttttaagtttttaaatttaaaaatttggagattaatta--tatattatattaaatttAC-ATTGAAAAATGAATATATGATGTAAACTAT----ATAAAAATGAACAT----------------------ATTTACTTGAAATTTGGTTTATTCAATTGGTAAG--AT-----CAAAATTGGATAAATTAAG----TTATGTAGGTGTTGTGTCTATAGGAC--AAAATATTTA----------GTTTTAAAAAATTTATGGGATAATCATAATTCTA-GGTTTATGAAT--TATTATCATCGTT-CTATTTTCAGCAAATTAAAAATAGT---ATGAACACTCTGGAGCTTATCCCTCAATTTATGGTCTGGAAActtaccaccat-ccccagcttctggtaattaccattccactctctgcttctatgagtttaagtttttcagatcctcatttaaatg
s panTro5.chr6              29273767 411 + 175400573 TTTCATCTTTTCTTTTTCTttttaagtttttaaatttaaaaatttggagatta-----------tatattaaatttAC-ATTGAAAAATGAATATATGATGTAAACTAT----ATAAAAATGAACAC----------------------ATCTACCTGAAATTTGGTTTATTCAATTGGTAAG--AT-----CAAAATTGGATAAATTAAG----TTATGTAGGTGTTGTGTCTATAGGAC--AAAATATTTA----------GTTTTAAAAAATTTGTGGGATAATCATAATTCTA-GGTTTATGAAT--TATTATCATCGTT-CTATTTTCAGCAAATTAAAAATAGT---ATGAACACTCTGGAGCTTATCCCTCAATTTATGGTCTGGAAACTTACCAccac-ccccagcttctggtaattaccattccactctctgcttctatgagtttaagtttttcagatcctcatttaaatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29519957 415 + 173848474 TTTCATCTTTTCTTTTTCTTTTTAAGTTTTTAAATTTAAAAATTTGGAGATTAATTA-------TATATTAAATTTAC-ATTGAAAAATGAATATATGATGTAAACTAT----ATAAAAATGAACAC----------------------ATCTACTTGAAATTTGGTTTATTCAATTGGTAAG--AT-----CAAAATTGGATAAATTAAG----TTATGTAGGTGTTGTGTCTATAGGAC--AAAATATTTA----------GTTTTAAAAAATTTGTGGGATAATCATAATTCTA-GGTTTATGAAT--TATTATCATCGTT-CTATTTTCAGCAAATTAAAAATAGT---ATGAACACTCTGGAGCTTATCCCTCAATTTATGGTCTGGAAACttaccaccac-ccccagcttctggtaattaccattccactctctgcttctatgagtttaagtttttcagatcctcatttaaatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5316969 416 +   6154872 TTTCATCTTTTCTTTTTCTttttaagtttttaaatttaaaaatttggagattaattt--tatattatattaaatttAC-ATTGAAAAATGAATATATGATGTAAACTAT----ATAAAAATGAACAC----------------------ATTTACTTGAAATTTGGTTTATTCAATTGGTAAG--AT-----CAAAATTGGATAAATTAAG----TTATGTAGGTGTTGTGTCTATAGGAC--AAAA----TA----------GTTTTAAAAAATTTATGGGATAATCATAATTCTA-GGTTTATGAAT--TATTATCATCGTT-CTATTTTCAGCAAATTAAAAATAGT---ATGAACACTCTGGAGCTTATCCCTCAATTTATGGTCTGGAAActtaccaccat-ccccagcttctggtaattaccattccactctctgcttctatgagtttaagtttttcagatcctcatttaaatg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74323362 413 + 122973662 TTTCATCTT---------TTTCTAAGGTTTTAAATTTAAAAATTTGGAGATTAATTA--TATATTATATTAAATTTAC-ATTGAAAAATGAATATATGATGTAAACTAT--------AAATGAACAC----------------------ATTTACTTGAAATTTGGTTTATTCAATTGGCAAGATAT-----CAAAACTGGATAAATTAAG----TTATGTAGGTGTTGTGTCTATAGGACAGAAAATATTTA----------GTTTCAAAAAATTTATGGGATAATCATAATTCTA-GGTTTATGAACCATATTATCATCGTT-CTATTTTCAGCAAATTAAAAATAGT---ATGAACACTCTGGAGCTTATCTCACAATTTATGGTCTGGAAACTTAccaccat-ccccatcttctggtaattaccattccactctctgcttctatgagtttaagtttttcagatcctcatttaaatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29479914 432 + 172585720 TTTCATTTTTTCTTTTTGTTTTTAAGTTTTTAAATTTTAAAATTTGGAGATTAATGA--TATACTATATTAAATTTAC-ATTGAAAAATGAATTTATGGTGTAAACTATATTTATAAAAATGAACAC----------------------ATTTACTTGAAATTTGGTTTATTCAATTGGTAAG--ATATCAATAAAATTGGATAAATTAAG----TTATGTAGGTGTTGTTTCTATAGGACAGAAAATATTTG----------GCTTT-AAAAATTTATGGGATAATCATAATTCTA-GGTTTATGAACCATATTATCATCGTT-CTATTTTCAGCAAATTAAAAATAGT---ATGAACACTCTGGAGCTTATCCCTCAATTTATGGTCTGGAAACTTACCAccac-ccccagcttctggtaattaccattccactctctgcttctatgagtttaactttttcagatcctcatttaaatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29141033 432 - 170955103 tttcattttttctttttgtttttaagtttttaaattttaaaatttggagattaatga--tatactatattaaatttac-attgaaaaATGAATTTATGGTGTAAACTATATCTATAAAAATGAACAC----------------------ATTTACTTGAAATTTGGTTTATTCAATTGGTAAG--ATATCAATAAAATTGGATAAATTAAG----TTATGTAGGTGTTGTTTCTATAGGACAGAAAATATTTG----------GCTTT-AAAAATTTATGGGATAATCATAATTCTA-GGTTTATGAACCATATTATCATCGTT-CTATTTTCAGCAAATTAAAAATAGT---ATGAACACTCTGGAGCTTATCCCTCAATTTATGGTCTGGAAACTTACCAccac-ccccagcttctggtaattaccattccactctctgcttctatgagtttaactttttcagatcctcatttaaatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2131123 432 -   2996164 tttcattttttctttttgtttttaagtttttaaattttaaaatttggagattaatga--tatactatattaaatttac-attgaaaaATGAATTTATGGTGTAAACTATATCTATAAAAATGAACAC----------------------ATTTACTTGAAATTTGGTTTATTCAATTGGTAAG--ATATCAATAAAATTGGATAAATTAAG----TTATGTAGGTGTTGTTTCTATAGGACAGAAAATATTTG----------GCTTT-AAAAATTTATGGGATAATCATAATTCTA-GGTTTATGAACCATATTATCATCGTT-CTATTTTCAGCAAATTAAAAATAGT---ATGAACACTCTGGAGCTTATCCCTCAATTTATGGTCTGGAAACTTACCAccac-ccccagcttctggtaattaccattccactctctgcttctatgagtttaactttttcagatcctcatttaaatg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2009277 432 -   2157725 tttcattttttctttttgtttttaagtttttaaattttaaaatttggagattaatta--tatactatattaaatttAC-ATTGAAAAATGAATTTATGATGTAAACTATATCTATAAAAATGAACAT----------------------ATTTACTTGAAATTTGGTTTATTCAAGTGGTAAG--ATATCAATAAAATTGGATAAATTAAG----TTATGTAGGTGTTGTTTCTATAGGACAGAAAATATTTG----------GCTTT-AAAAATTTATGGGATAATCATAATTCTA-GGTTTATGAACCATATTATCATCGTT-CTATTTTCAGCAAATTAAAAATAGT---ATGAACACTCTGGAGCTTATCCCTCAATTTATGGTCTGGAAACTTACCAccac-ccccagcttctggtaattaccattccactctctgcttctatgagtttaactttttcagatcctcatttaaatg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28443946 432 -  71996105 tttcattttttctttttgtttttaagtttttaaattttaaaatttggagattaatta--tatactatattaaatttAC-ATTGAAAAATGAATTTATGATGTAAACTATATCTATAAAAATGAACAC----------------------ATTTACTTGAAATTTGGTTTATTCAATTGGTAAG--ATATCAATAAAATTGGATAAATTAAG----TTATGTAGGTGTTGTTTCTGTAGGACAGAAAATATTTG----------GCTTT-AAAAATTTATGGGATAATCATAATTCTA-GATTTATGAACCATATTATCATCGTT-CTATTTTCAGCAAATTAAAAATAGT---ATGAACACTCTGGAGCTTATCTCTCAATTTATGGTCTGGAAACTTACCAccac-ccccagcttctggtaattaccattccactctctgcttctatgagtttaactttttcagatcctcatttaaatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2151985 432 +   2316924 TTTCATTTTTTCTTTTTGTttttaagtttttaaattttaaaatttggagattaatta--tatactatattaaatttAC-ATTGAAAAATGAATTTATGATGTAAACTATATCTATAAAAATGAACAC----------------------ATTTACTTGAAATTTGGTTTATTCAAGTGGTAAG--ATATCAATAAAATTGGATAAATTAAG----TTAGGTAGGTGTTGTTTCTATAGGACAGAAAATATTTG----------GCTTT-AAAAATTTATGGGATAATCATAATTCTA-GGTTTATGAACCATATTATCATCGTT-CTATTTTCAGCAAATTAAAAATAGT---ATGAACACTCTGGAGCTTATCCCTCAATTTATGGTCTGGAAACTTACCAccac-ccccagcttctggtaattaccattccactctctgcttctatgagtttaactttttcagatcctcatttaaatg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2016381 432 -   3067355 tttcattttttctttttgtttttaagtttttaaattttaaaatttggagattaatta--tatactatattaaatttAC-ATTGAAAAATGAATTTATGATGTAAACTATATCTATAAAAATGAACAC----------------------ATTTACTTGACATTTGGTTTATTCAATTGATAAT--ATATCAATAAAATTGGATAAATTAAG----TTATGTAAGTGTTGTTTCTATAGGATAGAAAATATTTG----------GCTTT-AAAAATTTATGGGATAATCATAATTCTA-GGTTTATGAACCATATTATCATCGTT-CTATTTTCAGCAAATTAAAAATAGT---ATGAACACTCTGGAACTTAGCCCTCAATTTATGGTCTGGAAAATTAccaccac-ccccagcttctggtaattaccattccactctctgcttctgtgagtttaactttttcagatcctcatttaaatg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171539006 452 - 171630274 TTTCATCTTTTCCTTTTCTTTCtaaatttttaaattaaaaattttggagattaattatatatattatattaaaCTTAC-ATTGAAAAATGAA--AACGATGTAAATTATATTTATAAAAATGAACACTTTTACTTGAAAAAATGAACATGTTTACTTGAAATTTGGTTTATTCAATTGGTAAG--ATATCAATTAAATTGGATAAA---------TTATGTACGTGCTGTGTCTACAGAACAGAAAATATTTG----------ACTA--AAAAATTTATGGGATAATCATAATTCTA-GGTTTATGAACCATATTATCATTATT-CTATTTTCAGCAAATTAAACATAGTATCATAAACAGTCTGGAAGTTACCCCTCAGTTTATGGTCTGGAGACTTACCATCTCAccccggcttctggtaattaccattccattctctgcttccatgagttcaacttttttagatcctcatataaatg
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26021691 415 +  26524999 TTTCCCCCTTTTTTGTTATTCTCCA---TGAAAATT----AATCTGAGGTGAATTTA--TGTA-TGTATGAAATTTACTGTTGAAGATTGAAAATC---TGTAAACCATGTCTATAAAAATGAACAC----------------------ATTTAATTGAACTTTGTTTTCTTT-TTGGGTAAG--ATATCAATCAAGTTGGAGAAATATAGGCAATTGTCTA-GTGTTGTGTCTGCAGGAAAGAAAATACTTGCTAAAAGGTTTTTTT-TTAAAATTATGGAATAATCATAATTCTGTGGTTTGTGAGCCTTATCATAGTTGTTCCTATTTTCAATGAAGTAAATACAGTATCATGAACATATTTTCGcctaccattcaatccaagtactgggatct------ctc-taacagcttattgt------------------tacctctatgcttttacatcttccttgttcttacctgactg
i canFam3.chr35            I 9 I 93750
e dasNov3.JH561790            173862 6931 -    302817 I
e otoGar3.GL873742           1650795 7699 -   2232465 I

a score=3721460.000000
s hg38.chr6_GL000254v2_alt    299143 563 +   4827813 agatcatgtagtatttgcctttctgtaactggctcatttaacttaacatcatagcttctaggttcatccgtgttgttggaaatgacagggtttcctt-----tttttgttacgagtgaatagta----------------caccacattttcttgatttattcattcattgatgaacacaaagtttgattccatatctttgctattgtgaataatgctgccataaacatgggagtgcagacatctctttaacatactgatttcaattccttggatatatacccagtggtgggatggctggatcatatggtagttctatttttaatttttggagtaacctccacactgttttatatagtggctgtattaatgtacattcccactaacggtgtgcaagggttcctt-tttttccctacattctcaccaagctgttatctttgc-tttttatgacaatagccattctaaga-gtatgaagtgatatctcactgtgcatttaatttacatctccccattgattagtgatgttgagca-tttttc--atatacatgttggccatttgtaggtcttcttttgagaaatgtgtattt
s panTro5.chr6              29274178 560 + 175400573 agat---gtagtatttgcctttctgtaactggctcatctaacttaacatcatagcttctaggttcatccatgttgttggaaatgacagggtttcctt-----tttttgttacgagtgaatagta----------------caccacattttcttgatttattcattcattgatgaacacaaagtttgattccatatctttgctattgtgaataatgctgccataaacatgggagtgcagacatctctttaacatactgatttcaattccttggatatatacccagtggtgggatggctggatcatatggtagttctatttttaatttttggagtaacctccacactgttttatatagtggctgtattaatgtacattcccactaacagtgtgcaagggttcctt-tttttccctacattctcaccaagctgttatctttgc-tttttatgacaatagccattctaaga-gtatgaagtgatatctcactgtgcatttaatttacatctccccattgattagtgatgttgagca-tttttc--atatacctgttggccatttgtaggtcttcttttgagaaatgtgtattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29520372 563 + 173848474 agatcatgtagtatttgcctttctgtaactggctcatttaacttaacatcatagcttctaggttcatccatgttgttggaaatgacagggtttcctt-----tttttgttacgagtgaatagta----------------caccacattttcttgatttattcattcattgatgaacacaaagtttgattccatatctttgctattgtgaataatgctgccataaacatgggagtgcagacatctctttaacatactgatttcaattccttggatatatacccagtggtgggatggctggatcatatggtagttctatttttaatttttggagtaacctccacactgttttatatagtggctgtattaatgtacattcccactaacagtgtgcaagggttcctt-tttttccctacattctcaccaagctgttatctttgc-tttttatgacaatagccattctaaga-gtatgaagtgatatctcactgtgcatttaatttacatctccccattgattagtgatgttgagca-tttttc--atatacctgttggccatttgtaggtcttcttttgagaaatgtgtattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5317385 563 +   6154872 agatcatgtagtatttgcctttctgtaactggctcatttaacttaacatcatagcttctaggttcatccatgttgttggaaatgacagggtttcctt-----tttttgttacgagtgaatagta----------------caccacattttcttgatttattcattcattgatgaacacaaagtttgattccatatctttgctattgtgaataatgctgccataaacatgggagtgcagacatctctttaacatactgatttcaattccttggatatatacccagtggtgggatggctggatcatatggtagttctatttttaatttttggagtaacctccacactgttttatatagtggctgtattaatgtacattcccactaacagtgtgcaagggttcctt-tttttccctacattctcacgaagctgttatctttgc-tttttatgacaatagccattctaaga-gtatgaagtgatatctcactgtgcatttaatttacatctccccattgattagtgatgttgagca-tttttc--atatacctgttggccatttgtaggtcttcttttgagaaatgtgtattt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74323775 556 + 122973662 agatcatgtagtattttcctttctgtaactggctcatttaacttaacattatagcttctaggttcatccatgttgttggaaatgacagggtttcctt-----tttttgttacgagtgaatagta----------------caccacattttcttgatttattcattcattgatgaacacaaagtttgattccatatctttgctattgtgaataatggtgccataaacatgggaatgcagacatctttttaacatactgatttcaattccttggatatatacctagtggtgggatggctggatcatatggtagttctatttttaatttttggagtaacctccacactgttttctatagtggctgtattaatgtacattcccactaacagtgtgcaagtgttcc----ttttccccacattctcaccga---gttatctttgc-tttttatgacaatagccattctaagg-gtatgaagtgatacttcattgtgcatttaatttacctctccctattgatcagtgatgttgagca-tttttcatatatacctgttggccatttgtagg---tcttttgagaaatgtgtattt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29480346 564 + 172585720 agatcatgtagtagttgcctttctgtaactggctcatttcacttaacatcatagcttctaggttcatccatgttgttgcaaatgacagggtttcctt-----tttttgttacgagtgaatagta----------------caccacattttcttgatatattcattccttgatgaacacttagtttgattccatatctttgctattgtgaataatgttgccataaacatgggagtgcagacatctctttagcatactgatttcaattccttggatatatatccagtggtgggatggctggatcatatggtagttctatttttaagttttggagtaacctccacactgttttctacagtggctgtattaatgtccattcccactaacagtgcgcaagagttcctt-tttccccccacattctcaccgagttgttatctttgc-tttttatgatagtagccattctacga-gtatgaagtgatatctcattgtgcatttaatttatatttccccattgattagtgatgttgagcattttttc--atatacctgttggctatttgtaggtcttcttttgagaaatgtgtattt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29141465 564 - 170955103 agatcatgtagtagttgcctttctgtaactggctcatttcacttaacatcatagcttctaggttcatccatgttgttgcaaatgacagggtttcctt-----tttttgttacgagtgaatagta----------------caccacattttcttgatatattcattccttgatgaacacttagtttgattccatatctttgctattgtgaataatgttgccataaacatgggagtgcagacatctctttagcatactgatttcaattccttggatatatacccagtggtgggatggctggatcatatggtagttctatttttaagttttggagtaacctccacactgttttctacagtggctgtattaatgtccattcccactaacagtgcgcaagggttcctt-tttccccccacattctcaccgagttgttatctttgc-tttttatgatagtagccattctacga-gtatgaagtgatatctcattgtgcatttaatttatatttccccattgattagtgatgttgagcattttttc--atatacctgttggctatttgtaggtcttcttttgagaaatgtgtattt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2131555 564 -   2996164 agatcatgtagtagttgcctttctgtaactggctcatttcacttaacatcatagcttctaggttcatccatgttgttgcaaatgacagggtttcctt-----tttttgttacgagtgaatagta----------------caccacattttcttgatatattcattccttgatgaacacttagtttgattccatatctttgctattgtgaataatgttgccataaacatgggagtgcagacatctctttagcatactgatttcaattccttggatatatacccagtggtgggatggctggatcatatggtagttctatttttaagttttggagtaacctccacactgttttctacagtggctgtattaatgtccattcccactaacagtgcgcaagggttcctt-tttccccccacattctcaccgagttgttatctttgc-tttttatgatagtagccattctacga-gtatgaagtgatatctcattgtgcatttaatttatatttccccattgattagtgatgttgagcattttttc--atatacctgttggctatttgtaggtcttcttttgagaaatgtgtattt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2009709 564 -   2157725 agatcatgtagtagttgcctttctgtaactggctcatttcacttaacatcatagcttctaggttcatccatgttgttgcaaatgacagggtttcctt-----tttttgttacgagtgaatagta----------------caccacattttcttgatatattcattcattgatgaacacttagtttgattccatatctttgttattgtgaataatgttgccataaacatgggagtgcagacatctctttagcatacggatttcaattccttggatatatacccagtggtgggatggctggatcatatggtagttctatttttaagttttggagtaacctccacactgttttctacagtggctgtattaatgtccattcccactaacagtgcgcaagggttcctt-tttccccccacattctcaccgagttgttatctttgc-tttttatgatagtagccattctaaga-gtatgaagtgatatctcattgtgcatttaatttatatttccccattgattagtgatgttgagcattttttc--atatacctgttggctatttgtaggtcttcttttgagaaatgtgtattT
i cerAty1.NW_012001495v1   C 0 I 1133
s chlSab2.chr17             28444378 564 -  71996105 agatcatgtagtagttgcctttctgtaactggctcatttcacttaacatcatagcttctaggttcatccatgttgttgcaaatgacagggtttcctt-----tttttgttacgagtgaatagta----------------caccacattttcttgatatattcattcattgatgaacacttagtttgattccatatctttgctgttgtgaataatgttgccataaacatgggagtgcagacatctctttagcatactgatttcaattccttggatatatacccagtggtgggatggctggatcatatggtagttctatttttaagttttggagtaacctccacactgttttctacagtggctgtattaatgtccattcccactaacagtgcgcaagggttcctt-tttccccccacattctcaccgagttgttatctttgc-tttttatggtagtagccattctaaga-gtatgaagtgatatctcattgtgcatttaatttatatttccccattgattagtgatgttgagcattttttc--atatacctgttggctatttgtcggtcttcttttgagaaatgtgtattt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2152417 564 +   2316924 agatcatgtagtagttgcctttctgtaactggctcatttcacttaacatcatagattctaggttcatccatgttgttgcaaatgacagggtttcctt-----tttttgttacgagtgaatagta----------------caccacattttcttgatatattcattcattgatgaacacttagtttgattccatatctttgctattgtgaataatgttgccataaacatgggagtgcagacatctctttagcatactgatttcaattccttggatacatacccagtggtgggatggctggatcatatggtagttctatttttaagttttggagtaacctccacactgttttctacggtggctgtattaatgtccattccaactaacagtgcgcaagggttcctt-tttccccccacattctcaccgagttgttatctttgc-tttttatgatagtagccattctaaga-gtatgaagtgatatctcattgtgcatttaatttatatttccccattgattagtgatgttgagcattttttc--atatacctgttggctatttgtaggtcttcttttgagaaatgtgtattt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2016813 564 -   3067355 agatcgtgtagcatttgcctttctgtaactggctcatttcacttaacatcatagcttctaggttcctccatgttgttgcaaatgacagggtttcctt-----tttttgttacgagtgaatagta----------------caccacattttcttgatatattcattcattgatgaacacttagtttgattccatatctttgctattgtgaataatgctgccataaacatgggagtgcagacatctctttaacatactgatttcaattccttggatatatacccagtggtgggatggctggatcatatggtagttctatttttaatttttggagtaacctccacactgttttctacagtggctgtattaatgtccattcccactaacagtgcgcaagggttcctt-ttttcccccacattctcaccgagttgttatctttgc-tttttatgatagtagccattctaaga-gaatgaagtgatatcttattgtgcatttaatttacatttccccattgattagtgatgttgagcattttttc--atatacctgttggctatttgtaggtcttcttttgagaaatgtgtattt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171539458 584 - 171630274 agatcatgtagtatttgcctttctgtaactggcttatttctcttaacaccgtagcttccaggtacgtccatgttgttgcaaatgacagggtttttttatttgttgttgttaagggtgaatagtatttcattgtgaacatgcaccatattttcttgatgtattcatccattgatgaatacttcagttgattccctatctttgctattgtgaataatgctgccataaacatggcagtgcagacatttctttaacatactgatttcaattctttggatacatacccagtagtgggatggctggatcatacggtagttccatttttaattttttgagtgatctccacgctgttttccatagtggctgtattaatttacattcccactaacagtgtacaagggttccttcttcccccccacattctcactcagttgttatctttgcatttttatgattatagcgattctaagaggtatgaagtgatatctcattgtgcatttattttacattttcccattgattagtga---tgagcattttttc--atat-cctgttggccatttgtatgtcttcttttgagaaatgtatattt
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            173862 6931 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I

a score=1227252.000000
s hg38.chr6_GL000254v2_alt    299706 259 +   4827813 gggtcttttgcccatttttattttcatttttaaaatttttaaatta----ttttattttattttttatttttatttttgagatggagtctctctctgtctcccaggctggagtgcagtgacacaatctcggctcactgcagcttccacctcccaggttcaagtgattcttgtgcctcagcctcctgagtagctgagactagaggcacgtaccaccatgcctagctaatttttcta---tttttagtagagacggggtttcaccatg
s panTro5.chr6              29274738 259 + 175400573 gggtcttttgcccatttttatttttatttttaaaatttttaaatta----ttttattttattttttatttttatttttgagatggagtctctctctgtctcccaggctggagtgcagtgacacaatctcggctcactgcagcctccacctcccaggttcaagtgattcttgtgcctcagcctcctgagtagctgagaccagaggcatgtaccaccatgcctagctaatttttcta---tttttagtagagacagggtttcaccatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29520935 259 + 173848474 gggtcttttgcccatttttatttttatttttaaaatttttaaatta----ttttattttattttttatttttatttttgagatggagtctctctctgtctcccaggctggagtgcagtgacacaatctcggctcactgcagcctccacctcccaggttcaagtgattcttgtgcctcagcctcctgagtagctgagaccagaggcacgtaccaccatgcctagctaatttttcta---tttttagtagagacagggtttcaccatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5317948 259 +   6154872 gggtcttttgcccatttttattttcattttaaaaaattttaaatta----ttttattttattttttatttttatttttgaaatggagtctctctctgtctcccaggctggagtgcagtgacacaatctcggctcactgcagcctccacctcccaggttcaagtgattcttgtgcctcagcctcctgagtagctgagactagaggcacgtaccaccatgcctagctaatttttcta---tttttagtagagacgggttttcaccatg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74324331 251 + 122973662 gggtcttttagccattttta-tttcatttaaaaaa-----aattta----cattattttattttttatttttatttttgagatggaa--tctctctgtctcccaggctggagtgcagtgacacaatctcggctcactgcagcctccacctcccaggttcaagtgattcttgtgcctcagcttcctgagtagctgggactagaggcacgtaccaccatgcctggctaatttttcta---tttttagtagagacggggtttcaccatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29480910 254 + 172585720 gggtattttgcccatttttattttcatttaaacaatttttaaacta---------ttttattttttatttttatttttgagatggagtctcactctgtctcccaggctgaagtgtagtgacacaatctcagctcactgcagcctctgcctcctaggttcaagtgattcttgtgcctcagcctcctgagttgctggaactagaggcacgtaccaccacacctggctaatttttgta---tttttagtagagacagggtttcaccatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29142029 254 - 170955103 gggtattttgcccatttttattatcatttaaaaaatttttaaacta---------ttttattttttatttttatttttgagatggagtctcactctgtctcccaggctgaagtgtagtgacacaatctcagctcactgcagcctctgcctcctaggttcaagtgattcttgtgcctcagcctcctgagtagctggaactagaggcacgtaccaccacacctggctaatttttgta---tttttagtagagacagggtttcaccatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2132119 253 -   2996164 gggtattttgcccatttttattttcatttaaaaaaattttaaacta---------tttta-tttttatttttatttttgagatggagtctcactctgtctccaaggctgaagtgtagtgacacaatctcagctcactgcagcctctgcctcctaggttcaagtgattcttgtgcctcagcctcctgagtagctgggactagaggcacgtaccaccacacctggctaatttttgta---tttttagtagagacagggtttcaccatg
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28444942 265 -  71996105 gggtatgttgcccatttttattttcatttaaa-aaattttaaactattttttttttttttttttttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgcaatctcggctcactgcaagctccgccttccgggttcacgccattctcctgcctcagccttccgagtagctgggactacaggcgcccgccactgcgcccggctaatttttttctattttttagtagagacggggtttcaccatg
i chlSab2.chr17            C 0 I 877
s manLeu1.NW_012104165v1     2152981 259 +   2316924 aggtattttgcccatttttattttcattaaaacagaatttaaacta----ttttattttattttttatttttatttttgagatggagtctcactctgtctcccaggctgaagtgtagtgacacaatctcagctcactgcagcctctgcctcctaggttcaagtgattcttgtgcctcagcctcctgagtagctgggactagaggcacttaccaccacacctggctaatttttgta---tttttagtagagacagggtttcaccatg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2017377 222 -   3067355 gggtcttttgcccatttttagtttcatttttaaaattttaaaatta---------ttttattttttatttttatttttgagatggagtctcactctgtctcccaggctggagtgtagtgacacaatctcagctcactgca--------------------------------gcctcagcctcctgagtagctgggactagaggtacgtaccaccacacctggctaatttttgta---tttttagtagagacagggtttcaccatg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171540042 241 - 171630274 gggtcttttgcccgtttttttttttatttttaaaat-------------------ttttattttttatttttatttttgagatgaagtgtcactctgtcacccaggctggaatgcaatggcgtgatctccactcgctgcagactctgcctcccaggttcaagtgattcttgtgcttcagccttctgagtagctgggagtacaggcatgtaccact---tctggctaatttttgta---tttttagtagagatgaggtttcaccatg
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            173862 6931 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e cerAty1.NW_012001495v1     2010273 1133 -   2157725 I

a score=1033672.000000
s hg38.chr6_GL000254v2_alt    299965 245 +   4827813 ttggccaggctggtctcgaactcttgacctcaagtgatccacccatcttggcctcccaaaattctgagattagagatgtgaaccaacacagccagctccattttaaaatagaattatgttttcttg--------tttgagcttct--tatatattttaga-tatta-gccccttattaga-tacatcatttgcaaatattttctcccac--tccataggttgtcttttcattattttatttgtttccctgactgtacagg
s panTro5.chr6              29274997 245 + 175400573 ttggccaggctggtctcgaactcttgacctcaagtggtccacccatcttggcctcccaaaatgctgagattagaggtgtgaaccaacacagccagctccattttaaaatagaattatgttttcttg--------tttgagcttct--tatatattttaga-tatta-gccccttattaga-tacatcatttgcaaatattttctcccac--tccataggttgtcttttcattattttatttgtttccctgactgtacagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29521194 245 + 173848474 ttggccaggctggtctcgaactcttgacctcaagtggtccacccatcttggcctcccaaaatgctgagattagaggtgtgaaccaacacagccagctccattttaaaatagaattatgttttcttg--------tttgagcttct--tatatattttaga-tatta-gccccttattaga-tacatcatttgcaaatattttctcccac--tccataggttgtcttttcattattttatttgtttccctgactgtacagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5318207 245 +   6154872 ttggccaggctggtctcgaactcttgacctcaagtgatccacccatcttggcctcccaaaatgctgagattagaggtgtgaaccaacacagccagctccattttaaaatagaattatgttttcttg--------tttgagcttct--tatatattttaga-tatta-gccccttattaga-tacatcatttgcaaatattttctcccac--tccataggttgtcttttcattattttatttgtttccctgactgtacagg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74324582 239 + 122973662 ttggccaggctggtctcgaactcctgacctcaagtgatccacccatcttggcctcccaaagtgctgagattacagatgtgagccaacacagccagctccattttaaaatagaat--tgttttcttg--------tttgagtttct--tatatattttaca-tatta-gccccttattaga-tacatcatttgcaaatattttttcccac--tccataggttgtcttttcattgt----tttgtttccctgactgtgcaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29481164 247 + 172585720 ttggccaggctggtctcgaactcctgacctcaagtgatccacccacctcggcctcccaaagtgctgagatgacaggtgggagccactacagccagttccatttttaaatagaattatgtttttttg--------tttgcgtttcttatatatattttaga-tatta-gccccttattaga-tacatcatttgcaaatattttctcccac--tccataggttgtcttttcattattttgtttgtttccctgactgtgcaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29142283 247 - 170955103 ttggccaggctggtctcaaactcctgacctcaagtgatccacccacctcggcctcccaaagtgctgagatgacaggtgggagccactacagccagttccatttttaaatagaattatgtttttttg--------tttgcgtttcttatatatattttaga-tatta-gccccttattaga-tacatcatttgcaaatattttctcccac--tccataggttgtcttttcattattttgtttgtttccctgactgtgcaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2132372 246 -   2996164 ttggccaggctggtctcgaactcctgacctcagtgcatccacccacctcgg-ctcccaaagtgctgagatgaca-gtgtgagccactacagcca--ttcatttttaaatagaattatg-ttttttg--------tttgcgtttcttatatatattttacg-tattaggccccttattagactacatcatttgcaaatattttctcccacgatccataggttgtcttttcattattttgtttgtttccctgactgtgcagg
i macNem1.NW_012011356v1   C 0 I 2589
s manLeu1.NW_012104165v1     2153240 248 +   2316924 ttggccaggctggtctcgaactcctgacctcaagtgatccacccacctaggcctcccaaagtgctgagatgacaggtgtgagccaccacagccagttccatttttaaatagaattatgttttcttg--------tttgcgtttcttatatatattttagattatta-gccccttattaga-tacatcatttgcaaatattttctcccac--tccataggttgtcttttcattattttgtttgtttccctgactgtgcaga
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2017599 245 -   3067355 ttggccaggctggtctcgaactcctaacctgaagtgatccacccaccttggcctcccaaagtgctgagatgataggcttgagccaccacagccagctccagttttaaatagaattatgttttcttg--------tttgagtttct--tatataatttagg-tatta-gccccttattaga-tgtatcatttgcaaatattttctcccac--gccataggttgtcttttcattattttgtttgtttctctgactgtgcaga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171540283 249 - 171630274 ttggctagtctggtctcgaactcccgacctcaagtgatctgctagcctcggtctcccaaagtgctgggactacaagcgtaagccaccatggccgatcctatttttaaatagaattatgttttcttgtttgagtatttgagtttct--tatatattttaga-tatta-gcccctaattaga-tatatcactggcaaatattttctctcat--ttcataggttgtcttttcattat----tttgttttcttgactgtgcaga
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            173862 6931 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e chlSab2.chr17             28445207 877 -  71996105 I
e cerAty1.NW_012001495v1     2010273 1133 -   2157725 I

a score=62010.000000
s hg38.chr6_GL000254v2_alt    300210 16 +   4827813 agctctttaatttgat
s panTro5.chr6              29275242 16 + 175400573 agctctttaatttgat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29521439 16 + 173848474 agctctttaatttgat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5318452 16 +   6154872 agctctttaatttgat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74324821 16 + 122973662 agctgtttaatttgat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29481411 16 + 172585720 agctctttaatttgat
i rheMac8.chr4             C 0 I 324
s macFas5.chr4              29142530 16 - 170955103 agctctttaatttgat
i macFas5.chr4             C 0 I 324
s manLeu1.NW_012104165v1     2153488 16 +   2316924 agctctttaatttgat
i manLeu1.NW_012104165v1   C 0 I 328
s colAng1.NW_012115566v1     2017844 16 -   3067355 agctctttaatttgat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171540532 16 - 171630274 tgctctttaatttaat
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            173862 6931 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e chlSab2.chr17             28445207 877 -  71996105 I
e cerAty1.NW_012001495v1     2010273 1133 -   2157725 I
e macNem1.NW_012011356v1     2132618 2589 -   2996164 I

a score=1927384.000000
s hg38.chr6_GL000254v2_alt    300226 289 +   4827813 ataatctcatttatttatatttg-cttttgttgactgtgcttttgaggtcatatcc-aaaaaatcattgaccagatcaatgtcatggagcatttctatgatttcttttagta---gtttaatagtctt-atgtttaagtctttaatgcattttgagttgatttttgtatatggtttgaggtatgcatgtaatttcgttcttcaacatgtggatattcag-tttttcaacaccgtttattgaagagactgccctgtccccattgtgtgttcttggcacctttgttgaaaatcaattg
s panTro5.chr6              29275258 289 + 175400573 ataatctcatttatttatactta-cttttgttgactgtgcttttggggtcataccc-aaaaaatcattgaccagatcaatgtcatggagcatttctatgatttcttttagta---gtttaatagtctt-atgtttaagtctttaatgcattttgagttgatttttgtatatggtttgaggtatgcatgtaatttcgttcttctacatgtggatattcag-tttttcaacaccgtttattgaagagactgccctgtccccattgtgtgttcttggcacctttgttgaaaatcaattg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29521455 289 + 173848474 ataatctcatttatttatacttg-cttttgttgactgtgcttttggggtcatatcc-aaaaaatcattgaccagatcaatgtcatggagcatttctatgatttcttttagta---gtttaatagtctt-atgtttaagtctttaatgcattttgagttgatttttgtatatggtttgaggtatgcatgtaatttcgttcttctacatgtggatattcag-tttttcaacaccgtttattgaagagactgccctgtccccattgtgtgttcttggcacctttgttgaaaatcaattg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5318468 290 +   6154872 ataatctcatttatttatatttg-cttttgttgactgtgcttttggggtcatatccaaaaaaatcattgaccagatcaatgtcatggagcatttctatgatttcttttagta---gtttaatagtctt-atgtttaagtctttaatgcattttgagttgatttttgtatatggtttgaggtatgcatgtaatttcgttcttcaacatgtggatattcag-tttttcaacaccgtttattgaagagactgccctgtccccattgtgtgttcttggcacctttgttgaaaatcaattg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74324837 290 + 122973662 ataatctcatttatttatatttg-cttttgttgacggtgcttttggggtaatatcc-aaaaaatcattgaccagatcaatgtcatggagcatttctatgatttcttttagta---gttttatagtcttaacgtttaagtctttaatgcattttgagttaatttttgtatatggtttgaggtatgcatgtaattttgttcttctacatgtggatattcag-tttttcaacaccgtttattgaagagactgccctgtccccattgtgtgttcttggcacctttgttgaaaatcaattg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29481751 290 + 172585720 ataatctcatttatttatatttgttttttgttgactgtgcttttggggtcatatcc-aaaaaatcattgaccagatcaatgtcatggagcatttctatgagttcttttagta---gttttgtagtctt-atgttaaagtctttaatgcattttgagttgatttttgtatatggtttgaggtatgcatgtaattttgttcttctacatgtggatattcag-tttttcaacaccatttattgaagggactgccctgtccccattgtgtgctcttggcacctttgttgaatatcaattg
i rheMac8.chr4             I 324 C 0
s macFas5.chr4              29142870 290 - 170955103 ataatctcatttatttatatttgttttttgttgactgtgcttttggggtcatatcc-aaaaaatcattgaccagatcaatgtcatggagcatttctatgagttcttttagta---gttttgtagtctt-atgttaaagtctttaatgcattttgagttgatttttgtatatggtttgaggtatgcatgtaattttgttcttctacatgtggatattcag-tttttcaacaccatttattgaagggactgccctgtccccattgtgtgctcttggcacctttgttgaatatcaattg
i macFas5.chr4             I 324 C 0
s macNem1.NW_012011356v1     2135207 290 -   2996164 Ataatctcatttatttatatttgttttttgttgactgtgcttttggggtcatatcc-aaaaaatcattgaccagatcaatgtcatggagtatttctatgagttcttttagta---gttttgtagtctt-atgttaaagtctttaatgcattttgagttgatttttgtatatggtttgaggtatgcatgtaattttgttcttctacctgtggatattcag-tttttcaacaccatttattgaagagactgccctgtccccattgtgtgctcttggcacctttgttgaatatcaattg
i macNem1.NW_012011356v1   I 2589 C 0
s cerAty1.NW_012001495v1     2011406 289 -   2157725 Ataatctcatttatttatatttg-tttttgttgactgtgcttttggggtcatatcc-aaaaaatcattgaccagatcaatgtcatggagcatttctacgagttcttttagta---gttttgtagtctt-atgttaaagtctttaatgcattttgagttgatttttgtatatggtttgaggtatgcatgtaattttgttcttctacatgtggatattcag-tttttcaacaccatttattgaagagactgccctgtccccattgtgtgctcttggcacctttgttgaaaatcaattg
i cerAty1.NW_012001495v1   I 1133 C 0
s chlSab2.chr17             28446084 289 -  71996105 ataatctcatttatttatatttg-tttttgttgacggtgcttttggggtcatatct-aaaaaatcattgaccagatcaatgtcatggagcatttctatgagttcttttagta---gttttgtagtctt-atgttaaagtctttaatgcattttgagttgatttttgtatatggtttgaggtatgcatgtaattttgttcttctacatgtggatattcag-tttttcaacaccatttattgaagagactgccctgtccccattgtgtgctcttggcacctttgttgaaaatcaattg
i chlSab2.chr17            I 877 C 0
s manLeu1.NW_012104165v1     2153832 289 +   2316924 ataatctcatttatttatatttg-tttttgttgactgtgcttttggggtcatatcc-aaaaaatcattgaccagatcaatgtcatggagcatttctacgagttcttttagta---gttttgtagtctt-atgtcaaagtctttaatgcattttgagttgatttttgtatatggtttgaagtatgcatgtaattttgttcttctacatgtggatattcag-tttttcaacaccatttattgaagagactgccctgtccccattgtgtgctcttggcacctttgttgaaaatcaattg
i manLeu1.NW_012104165v1   I 328 C 0
s colAng1.NW_012115566v1     2017860 288 -   3067355 ataatctcatttatttatatttg-tttttgttgactgtgcttttggggtcatatcc-aaaaaatcattgaccagatcaatgtcatggagcatttctatgatttcttttagta---gttttgtagtctt-atgttaaagtctttaatgcatttggagtagatttttgtatatgg-ttgaggtatgcatgtaattttgttcttctacatgtggatattcag-tgtttcaacaccatttattgaagagactgccctgtccccattgtgggttcttggcatcttttttgaaaatcaattg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171540548 292 - 171630274 atagtctcatttatttatatttg-cttttgttgactgtg-ttttgggatcatatcc-aaaaaatcattgactagatcaatgtcatggagcatttctatgatttattttaatattttttttatagcatt-atgtttaagtctttaatacattttgaattgatttctgtacatggtttgaggtacccatttaattttgttcttctacatgtggatattcaattttttcaacaccgtttactgaagagactgtcctgtccccattgtgtgttcttggcaccttggttgaaaatcaattg
i calJac3.chr4             C 0 I 828
e dasNov3.JH561790            173862 6931 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I

a score=397501.000000
s hg38.chr6_GL000254v2_alt    300515 72 +   4827813 attgtaaatgtatggattgatttttacgctattttgttccattggtttttgtgtctgtttttatgccagtgt
s panTro5.chr6              29275547 72 + 175400573 attgtaaatgtatagattgatttttacgctattttgttccattggtttttgtgtctgtttttatgccagtat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29521744 72 + 173848474 attgtaaatgtatagattgatttttacgctattttgttccattggtttttgtgtctgtttttatgccagtat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5318758 72 +   6154872 attgtaaatgtatggattgatttttacgctattttgttccattggtttttgtgtctgtttttatgccagtat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74325127 72 + 122973662 attgtaaatatatggattgatttttacgctattttgttccattggtttttgtgtctgtttttatgccactat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29482041 72 + 172585720 attataaatgtatggattgatttttaggctattttgttccattggtttttgtgtctgtttttatgccagtat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29143160 72 - 170955103 attataaatgtatggattgatttttaggctattttgttccattggtttttgtgtctgtttttatgccagtat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2135497 72 -   2996164 attataaatgtatggattgatttttaggctattttgttccattggtttttgtgtctgtttttatgccagtat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2011695 71 -   2157725 attataaatgtatggattgatttttaggctattttgttccattgatttttgtgtctg-ttttatgccagtat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28446373 71 -  71996105 attataaatgtatggattgatttttaggctattttgttccattggtttttgtgtctg-ttttatgccagtat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2154121 71 +   2316924 attataaatgtatggattgatttttaggctattttgttccattgatttttgtgtctg-ttttatgccagtat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2018148 68 -   3067355 attgtaaatgtatg----gatttttaggctattttgttccattggtttttgtgtctgtttttatgccagtat
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            173862 6931 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171540840 828 - 171630274 I

a score=2374040.000000
s hg38.chr6_GL000254v2_alt    300587 386 +   4827813 cctgttgttttgatgactataggttcacagtagattttgaagccaggtattatgatgcctcccatttt--tttttgtttgt----ttgtttttt-gattcaaggttactttggctatggatttttgtggatccagacaaattttagaatcg-ttttttctatttctctacaaaatgacattggtacttggatagagattgcattgaatctttatttggggtagtataggtattttaaaaatactaattttcccaatccatgaacatgaggtatttttcaa-tttttgtgtcttttgtaattttaaatatcagtgttttatagttttcaagtgtacaaatctttcacctcctcggtt-aaatttgcacctagttattttaattaatttattttttaa
s panTro5.chr6              29275619 392 + 175400573 cctgctgttttgattactataggttcacagtagattttgaagtcaggtattatgatgcctcccgttttg-tttttgtttttgtttttgtttttttgattcaaggttactttggctatggatttttgtggatccatacaaattttagaatcg-ttttttctatttctctacaaaatgatattggtacttggatagagattgcattgaatctttatttgcggtagtataggtattttaaaaatactaattttcccaatccatgaacatgaggtatttttcaa-tttttgtgtcttttgtaattttaaatatcagtgttttatagttttcaagtgtacaaatctttcacctcctcagtt-aaatttgcacctagttattttaattaatttatttttaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29521816 387 + 173848474 cctgctgttttgattactataggttcacagtagattttgaagtcaggtattatgatgcctcccgttttgttttttgttt------ttgtttttttgattcaaggttactttggctatggatttttgtggatccatacaaattttagaattg-ttttttctatttctctacaaaatgacattggtacttggatagagattgcattgaatctttatttgcggtagtataggtattttaaaaatactaattttcccaatccatgaacatgaggtatttttcaa-tttttttgtcttttgtaattttaaatatcagtgttttatagttttcaagtgtacaaatctttcacctcctcagtt-aaatttgcacctagttattttaattaatttatttttaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5318830 384 +   6154872 cctgctgttttgattactataggttcacagtagattttgaagtcaggtattatgatgcctcccgtttt--tttttttttgt----ttgttttt--gattcaaggttactttggctatggatttttgtggatccatacaaattttagaatcg-ttttttctatttctctacaaaatgacattggtacttggatagagattgcattgaatctttatttggggtagtataggtattttaaaaatactaattttcccaatccatgaacatgaggtatttttcaa-tttttgtgccttttgtaattttaaatatcagtgttttatagttttcaagtgtacaaatctttcacctcctcggtt-aaatttgcacctagttattttaattaatttatttttt-a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74325199 379 + 122973662 cctgctgttttgattactataggttcacagtagattctgaagtcaggtattaagatgcctcccattttggttttttttt------t---------ggttcaaggttagtttggctatggatttttgtggatccatacaaattttagagttg-ttttttctatttctttacagaatgacattggtacttggatagaaattgcattgaatctttatttggggtagtataggtaatttaaaaatactaattttcccaatccatgaacatgaggtatttttcaattttttgtgtcttttgtaattttaaatatcagtgttttatagttttcaagtttacaaatctttcacctccttgatt-aaatttgcacctagttattttaattaatttattttttaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29482113 380 + 172585720 cctgctgttttgattactataggttcacagtagattttgaagtcaggtattatgatgcctccagtttt--ttttttttt------ttttt-----ggttcaaggttactttggctatggatttttgtggatccacacaaattttagaatcg-ttttttctatttctctaaagaatgacattggtacttggatagagattgcattgaatctttatttggggtagtataggtatttcaaaaatattaattttcccagtccatgaaaatgaggtatttttcca-tttttgtgtcttttctaattttaaatatcagtgttttatagttttcaggtgtacaaatctttcacttccttggtt-aaatttgcacctagttactttaatttatttattttttaa
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              29143232 380 - 170955103 cctgctgttttgattactataggttcacagtagattttgaagtcaggtattatgatgcctccagtttt--ttttttttt------ttttt-----ggttcaaggttactttggctatggatttttgtggatccacacaaattttagaatcg-ttttttctatttctctaaagaatgacattggtacttggatagagattgcattgaatctttatttggggtagtataggtatttcaaaaatattaattttcccagtccatgaaaatgaggtatttttcca-tttttgtgtcttttctaattttaaatatcagtgttttatagttttcaggtgtacaaatctttcacttccttggtt-aaatttgcacctagttactttaatttatttattttttaa
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     2135569 378 -   2996164 cctgctgttttgattactataggttcacagtagattttgaagtcaggtattatgatgcctcca--ttt--ttttttttt------ttttt-----ggttcaaggttactttggctatggatttttgtggatccacacaaattttagaatcg-ttttttctatttctctaaagaatgacattggtacttggatagagattgcattgaatctttatttggggtagtataggtatttcaaaaatattaattttcccagtccatgaaaatgaggtatttttcca-tttttgtgtcttttctaattttaaatatcagtgttttatagttttcaggtgtacaaatctttcacttccttggtt-aaatttgcacctagttactttaatttatttattttttaa
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012001495v1     2011766 380 -   2157725 cctgctgttttgattactataggttcacagtagattttgaagtcaggtattatgatgcctctagttgt--ttttttttt------ttttt-----ggttcagggttactttggctatggatttttgtggatccacacaaattttagaatcg-ttttttctatttctctaaagaatgacattggtacttggatagagattgcattgaatctttatttggggtagtataggtatttcaaaaatattaattttcccagtccatgaacatgaggtatttttcca-tttttgtgtcttttctaattttaaatatcagtgttttatagttttcagatgtacaaatctttcacctccttggtt-aaatttgcacctagttactttaatttatttattttttaa
i cerAty1.NW_012001495v1   C 0 I 13
s chlSab2.chr17             28446444 379 -  71996105 cctgctgttttgattactataggttcacagtagattttgaagtcaggtattatgatgcctctagtt-t--ttttttttt------ttttt-----ggttcagggttactttggctatggatgtttgtggatccacacaaattttagaatcg-ttttttctatttctctaaagaatgacattggtacttggatagagattgcattgaatctttatttggggtagtataggtatttcaaaaatattaattttcccagtccatgaacatgaggtatttttcca-tttttgtgtcttttctaattttaaatatcagtgttttatagttttcaggtgtacaaatctttcacctccttggtt-aaatttgcacctagttactttaatttatttattttttaa
i chlSab2.chr17            C 0 I 13
s manLeu1.NW_012104165v1     2154192 380 +   2316924 cctgctgttttgattactataggttcacagtagattttgaagtcaggtattatgatgcctctagttgt--ttttttttt------ttttt-----ggttcagggttactttggctatggatttttgtggatccacacaaattttagaatcg-ttttttctatttctctaaagaatgacattggtacttggatagagattgcattgaatctttatttggggtagtataggtatttcaaaaatattaattttcccagtccatgaacatgaggtatttttcca-tttttgtgtcttttctaattttaaatatcagtgttttatagttttcagatgtacaaatctttcacctccttggtt-aaatttgcacctagttactttaatttatttattttttaa
i manLeu1.NW_012104165v1   C 0 I 13
s colAng1.NW_012115566v1     2018216 378 -   3067355 cctgctgttttcattactataggttcacagtagattttgaagtcaggtattatgatgcctccagtt------ttgtttt------ttttt-----ggttcaaggttactttggctatggatttttgtggatccaaacaaattttagaattgtttttttctatttctgtaaagaatgacactgatacttggatagagattgcattgaatctttacttggggtagtataggtatttcaaaagtattaattttcccaatccatgaatatgaggtatttttcca-tttttgtgtcttttctaattttaaatatcagtgttttatagttttcaagtgtaaaaatctttcacttccttggttaaaatttgcacctagttattttaattaattaattttttta
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chr4             171541668 370 - 171630274 cctgatgttttgattactatatgctcacagtaaatttcgaagtcaggtattacggtgcctccagtttt--tgttgttgt----------------tgttcaaggttactttggctatagttttttgtggatcaatacaaattttagaatgg-ttttttctatttctctaaagaatgacattagtacttgcatagaggttgcattcaattttcattttgggtaatatagatattttaaaagtattacttttcccaatccatgaccatgaggtattttctat-gttttgtgtcttttctaattttaaatataagtgttttatagttttcaagtgtgcaaatcttttacctccttggtt-aaatttgcacctaattatttt-----atttatttttcaa
i calJac3.chr4             I 828 C 0
e dasNov3.JH561790            173862 6931 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I

a score=16652.000000
s hg38.chr6_GL000254v2_alt    300973 10 +   4827813 ttatgattgt------
s panTro5.chr6              29276011 10 + 175400573 ttatgattgt------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29522203 10 + 173848474 ttatgattgt------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5319214 10 +   6154872 ttatgattgt------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74325578  9 + 122973662 ttgtaattg-------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29482494 10 + 172585720 ttgtaaatgg------
i rheMac8.chr4             I 1 I 6
s macFas5.chr4              29143613 10 - 170955103 ttgtaaatgg------
i macFas5.chr4             I 1 I 6
s macNem1.NW_012011356v1     2135948 10 -   2996164 ttgtaaatgg------
i macNem1.NW_012011356v1   I 1 I 6
s colAng1.NW_012115566v1     2018595 10 -   3067355 ttataaatgg------
i colAng1.NW_012115566v1   I 1 I 6
s calJac3.chr4             171542038 16 - 171630274 ttgtaaatgggattgt
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            173862 6931 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e manLeu1.NW_012104165v1     2154572 13 +   2316924 I
e chlSab2.chr17             28446823 13 -  71996105 I
e cerAty1.NW_012001495v1     2012146 13 -   2157725 I

a score=2921867.000000
s hg38.chr6_GL000254v2_alt    300983 466 +   4827813 ttacttaatttc-ttctcagatgattgttagtgcatagaaacactactgatttttgcatattgattttgtaacctgtaactttactgaatttgtttatttgaatagcttttt-------ttgttgttggagttcttagggttttccaaataaaggatcatgtcatcagaagagacagtttcacttcttcatttccaatttgtatgcctttttttctttttcttgcctaactgctctggctaggacattcagtactatgttgaacagaagtggtgagcgtgggcatctttatcttgttctggatcttagagggaaagctttcaactttttatcattatgatattagctgtgggcttgtaatatatggctcttattgtgttgGCAAAAATAGATTCTCAGAATATAATCTCCAGATTTTGTAATCCACTGATACAATTACATACTGA-TTACCTACTCTGTAATATGGAATTTAAAA
s panTro5.chr6              29276021 463 + 175400573 ttacttaatttc-ttctcagatgattgttagtgcatagaaacactactgatttttgtatattgattttgtaacctgtaactttactgaatttgtttatttgaatagcttttt-------ttgttgttggagttcttagggttttccaagtaaaggatcatgtcatcagaagagacaatttcacttcttcatttccactttgtatgcctttttttctttttcttgcctaactgctctggctaggacattcaatactatgttgaacagaagtggtgagcgtgggcatctttgtcttgttctggatcttagagggaaagctttcaactttttatcattat---attagctgtgggcttgtaatatatggctcttactgtgttgGCAAAAATAGATTCTCAGAATATAATCTCCAGATTTTGTAATCCACTGATACAATTACATACTGA-TTACCTACTCTGTAATATGGAATTTAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29522213 466 + 173848474 ttacttaatttc-ttctcatatgattgttagtgcatagaaacactactgatttttgtatattgattttgtaacctgtaactttactgaatttgtttatttgaatagcttttt-------ttgttgttggagttcttagggttttccaagtaaaggatcatgtcatcagaagagacaatttcacttcttcatttccactttgtatgcctttttttctttttcttgcctaactgctctggctaggacattcaatactatgttgaacagaagtggtgagcgtgggcatctttgtcttgttctgcatctcagagggaaagctttcaactttttatcattatgatattagctgtgggcttgtaatatatggctcttactgtgttgGCAAAAATAGATTCTCAGAATATAATCTCCAGATTTTGTAATCCACTGATACAATTACATACTGA-TTACCTACTCTGTAATATGGAATTTAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5319224 466 +   6154872 ttacttaatttc-ttctcagatgattgttagtgtatagaaacactactgatttttgtatattgattttgttacctgtaactttactgaatttgtttatttgaatagcttttt-------ttgttgttggagttcttagggttttccaaataaaggatcatgtcatcagaagagacagtttcacttcttcatttccaatttgtatgcctttttttctttttcttgcctaactgctctggctaggacattcaatactatgttgaacagaagtggtgagcgtgggcatctttgtcttgttctggatcttagagggaaagctttcaactttttatcattatgatattagctgtgggcttgtaatatatggctcttattgtgttgGCAAAAATAGATTCTCAGAATATAATCTCCAGATTTTGTAATCCACAGATACAATTACATACTGA-TTACCTACTCTGTAATATGGAATTTAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74325587 456 + 122973662 ----ttaatttc-ttttca---gattgttagtgcatagaaacactactgatttttgtatattgattttgtaacctgtaactttactgaatttgtttatttgaatagcttttt-------ttgttgttggagtgcttagggttttccaaataaaggatcatgtcatcagaagagacaatttcagttcttcatttccaatttgtatgcc-ttttttctttctcttgcctaactgctctggctaggacattcaatactatgttgaacagaagtggtaagcgtgggcatctttgtcttgttctggatcttagagggaaagctttcaactttttatcatgat---attagctgtgggcttgtaatatatggctcttattgtgttgGCAAAAATAGATTCTCAGAATATAATCTCCAGATTTTGTAATCCACTGATACAATTACATACTGATTTACCTACTCTGTACTATGGAATTTAAAA
i nomLeu3.chr1a            C 0 I 6558
s rheMac8.chr4              29482510 470 + 172585720 ttacttaatttctttttcagatgattgttattgcatagaaacactgctgatgtttgtatattgattttgtaacctgtaactttactgaa----tttatttgaacagttttttttttttgttgttgttggagttcttagggttttccaaataaaggatcatgtcatcagaagagacaatttcacttcttcatttccaatttgtatacatttttttctttttcttgcctaactgctctggctaggacattcaatactatgttgaacagaagtggtgagagcaggcatctttgtcgtgttctggatcttagagggaaagctttcaactttttataactatgatgttagctgtgggcttgtaatatatggcttttattgtgttgGAGAAAGCAGATTCTCAGATTATAATCTCCAGATTTTGTAATCTACGGATATAATTACATACTGA-TTACCTAGTCTGTACTATGGAATTAAAAA
i rheMac8.chr4             I 6 C 0
s macFas5.chr4              29143629 470 - 170955103 ttacttaatttctttttcagatgattgttattgcatagaaacactgctgatgtttgtatattgattttgtaacctgtaactttactgaa----tttatttgaacagttttttttttttgttgttgttggagttcttagggttttccaaataaaggatcatgtcatcagaagagacaatttcacttcttcatttccaatttgtatacatttttttctttttcttgcctaactgctctggctaggacattcaatactatgttgaacagaagtggtgagagcaggcatctttgtcgtgttctggatcttagagggaaagctttcaactttttataactatgatgttagctgtgggcttgtaatatatggcttttattgtgttgGAGAAAGCAGATTCTCAGATTATAATCTCCAGATTTTGTAATCTACGGATATAATTACATACTGA-TTACCTAGTCTGTACTATGGAATTAAAAA
i macFas5.chr4             I 6 C 0
s macNem1.NW_012011356v1     2135964 466 -   2996164 ttacttaatttctttttcagatgattgttattgcatagaaacactgctgatgtttgtatattgattttgtaacctgtaactttactgaa----tttatttgaacagtttttttttttt----ttgttggagttcttagggttttccaaataaaggatcatgtcatcagaagagacaatttcacttcttcatttccaatttgtatacatttttttctttttcttgcctaactgctctggctaggacattcaatactatgttgaacagaagtggtgagagcaggcatctttgtcgtgttctggatcttagagggaaagctttcaactttttataactatgatgttagctgtgggcttgtaatatatggcttttattgtgttgGAGAAAGCAGATTCTCAGAATATAATCTCCAGATTTTGTAATCTACGGATATAATTACATACTGA-TTACCTACTCTGTACTATGGAATTAAAAA
i macNem1.NW_012011356v1   I 6 C 0
s cerAty1.NW_012001495v1     2012159 469 -   2157725 ttgctt-acttctttttcagatgattgttattgcatagaaacactgctgatatttgtatattgattttgtaacctgtaactttactgaa----tttatttgaatagttttttgttgttgttgttgttggagttcttagggttttccaaataaaggatcatgtcatcagaagagacaatttcacttcttcatttccaatttgtatacatttttttctttttcttgcctaactgctctggctaggacattcaatactatgttgaacagaagtggtgagagcaggcatctttgtcgtgttctggatcttagaaggaaagctttcaactttttataactatgatattagctgtgggcttgtaatatatggcttttattgtgttgGAGAAAGCAGATTCTCAGAATATAATCTCCAGATTTTGTAATCTACGGATAAAATTACATACTGA-TTACCTACTCTGTACTATGGAATTTAAAA
i cerAty1.NW_012001495v1   I 13 C 0
s chlSab2.chr17             28446836 469 -  71996105 ttgctt-acttctttttcagatgattgttattgcatagaaacactgctgatgtttgtatattgattttgtaacctgtaactttactgaa----tttatttgaatagtttttttttgttgttgttgttggagttcttagggttttccaaataaaggatcatgtcatcagaagagacaatttgacttcttcatttccaatttgtatacatttttttctttttcttgcctaactgctctggctaggacattcaatactatgttgaagagaagtggtgagagcaggcatctttgtcgtgttctggatcttagagggaaagctttcaactttttataactatgatgttagctgtgggcttgtaatatatggcttttattgtgttgGAGAAAGCAGATTCTCAGAATATAATCTCCAGATTTTGTAATCTACAGATATAATTACATACTGA-TTACCTACTCTGTACTATGGAATTTAAAA
i chlSab2.chr17            I 13 C 0
s manLeu1.NW_012104165v1     2154585 469 +   2316924 ttgctt-acttctttttcagatgattgttattgcatagaaacactgctgatatttgtatattgattttgtaacctgtaactttactgaa----tttatttgaatagtttttttttgttgttgttgttggagttcttagggttttccaaataaaggatcatgtcatcagaagagacaatttcacttcttcatttccaatttgtatacatttttttctttttcttgcctaactgctctggctaggacattcaatactatgttgaacagaagtggtgagagcaggcatctttgtcgtgttctggatcttagaaggaaagctttcaactttttataactatgatattagctgtgggcttgtaatatatggcttttattgtgttgGAGAAAGCAGATTCTCAGAATATAATCTCCAGATTTTGTAATCTACAGATAAAATTACATACTGA-TTACCTACTTTGTACTATGGAATTTAAAA
i manLeu1.NW_012104165v1   I 13 C 0
s colAng1.NW_012115566v1     2018611 464 -   3067355 ttacttaatttctttttcagatgattgttattgcatagaaacactgctgatttttgtatattgattttgtaacctgtaactttactgaatttgtttatttgaatagtttttt----------ttgttggagttcttagggttttccaaataaaggatcatgtcatcagaagagacaatttcacttcttcatttccaatttgtatacctttttttctttttcttgcctaactgctctggctagaacattcaatactatgttgaacagaagtagtgagagcaggcatctttgttgtgctctggatcttagagggaaagctttcaactttttataattatgatgttagttgtgggcttgtaatatatgacttttattgtgttgGAGAAAGCAGAGTCTCAGAATATAATCTCCAGATTTTGTAATCTACTGATACAATTACATACTGA-TTACCTACTCTGTACTACGGAATCTAAAA
i colAng1.NW_012115566v1   I 6 C 0
s calJac3.chr4             171542054 459 - 171630274 ttacttaatttctttctcagatgattgttaatgcatagaaacact--tgatttatgtatattgatgttgtgacttgtaacattactaaatttgtttatttgaatagtttttttt-----tttttggtggagttcttagggttttccatatataagatcatgttatcagaagagagaatttcacttcttcatttccaatttgtataactttttttctttttcttgcctaactgctctggctacgacattcaa--------tgaacggaaatgatgaaagtgggtatctttgtcttgttctgggtcttagatgacatgctttcaactttttatcgttatgattttagctgtgggcttgtaggatatggctcttattgtgttggggAAAGTAGATTCTCAGCATATAATCTTCAGATATTGTAATCCACTGATACAATTACATACTGA-TTACCTACTCTGTACTATGAAATTTAAAA
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            173862 6931 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I

a score=24024.000000
s hg38.chr6_GL000254v2_alt    301449 4 +   4827813 AATT
s panTro5.chr6              29276484 4 + 175400573 AATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29522679 4 + 173848474 AATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5319690 4 +   6154872 AATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29482980 4 + 172585720 AATT
i rheMac8.chr4             C 0 I 6259
s macFas5.chr4              29144099 4 - 170955103 AATT
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     2136430 4 -   2996164 AATT
i macNem1.NW_012011356v1   C 0 I 6254
s cerAty1.NW_012001495v1     2012628 4 -   2157725 AATT
i cerAty1.NW_012001495v1   C 0 I 6242
s chlSab2.chr17             28447305 4 -  71996105 AATT
i chlSab2.chr17            C 0 I 6265
s manLeu1.NW_012104165v1     2155054 4 +   2316924 AATT
i manLeu1.NW_012104165v1   C 0 I 6288
s colAng1.NW_012115566v1     2019075 4 -   3067355 AATT
i colAng1.NW_012115566v1   C 0 I 6273
s calJac3.chr4             171542513 4 - 171630274 AATT
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            173862 6931 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e nomLeu3.chr1a             74326043 6558 + 122973662 I

a score=-550.000000
s hg38.chr6_GL000254v2_alt    301453 2 +   4827813 CC
s panTro5.chr6              29276488 2 + 175400573 CC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29522683 2 + 173848474 CC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5319694 2 +   6154872 CC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74332601 2 + 122973662 CG
i nomLeu3.chr1a            I 6558 C 0
s macFas5.chr4              29144104 1 - 170955103 C-
i macFas5.chr4             I 1 I 6253
e dasNov3.JH561790            173862 6931 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171542517 0 - 171630274 C
e colAng1.NW_012115566v1     2019079 6273 -   3067355 I
e manLeu1.NW_012104165v1     2155058 6288 +   2316924 I
e chlSab2.chr17             28447309 6265 -  71996105 I
e cerAty1.NW_012001495v1     2012632 6242 -   2157725 I
e macNem1.NW_012011356v1     2136434 6254 -   2996164 I
e rheMac8.chr4              29482984 6259 + 172585720 I

a score=3575.000000
s hg38.chr6_GL000254v2_alt    301455 3 +   4827813 ATG
s panTro5.chr6              29276490 3 + 175400573 ATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29522685 3 + 173848474 ATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5319696 3 +   6154872 ATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74332603 3 + 122973662 ATG
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29150358 3 - 170955103 ATA
i macFas5.chr4             I 6253 C 0
e dasNov3.JH561790            173862 6931 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171542517 0 - 171630274 C
e colAng1.NW_012115566v1     2019079 6273 -   3067355 I
e manLeu1.NW_012104165v1     2155058 6288 +   2316924 I
e chlSab2.chr17             28447309 6265 -  71996105 I
e cerAty1.NW_012001495v1     2012632 6242 -   2157725 I
e macNem1.NW_012011356v1     2136434 6254 -   2996164 I
e rheMac8.chr4              29482984 6259 + 172585720 I

a score=5005.000000
s hg38.chr6_GL000254v2_alt    301458 1 +   4827813 T
s panTro5.chr6              29276493 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29522688 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5319699 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74332606 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29150361 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2142688 1 -   2996164 T
i macNem1.NW_012011356v1   I 6254 C 0
s cerAty1.NW_012001495v1     2018874 1 -   2157725 T
i cerAty1.NW_012001495v1   I 6242 C 0
s chlSab2.chr17             28453574 1 -  71996105 T
i chlSab2.chr17            I 6265 C 0
s manLeu1.NW_012104165v1     2161346 1 +   2316924 T
i manLeu1.NW_012104165v1   I 6288 C 0
s colAng1.NW_012115566v1     2025352 1 -   3067355 T
i colAng1.NW_012115566v1   I 6273 C 0
e dasNov3.JH561790            173862 6931 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171542517 0 - 171630274 C
e rheMac8.chr4              29482984 6259 + 172585720 I

a score=84830.000000
s hg38.chr6_GL000254v2_alt    301459 14 +   4827813 GTGATTTTCTAACT
s panTro5.chr6              29276494 14 + 175400573 GTGATTTTCTAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29522689 14 + 173848474 GTGATTTTCTAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5319700 14 +   6154872 GTGATTTTCTAACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74332607 14 + 122973662 ATGATTTTCTAACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29489243 14 + 172585720 GTGATTTGCTAACT
i rheMac8.chr4             I 6259 C 0
s macFas5.chr4              29150362 14 - 170955103 GTGATTTGCTAACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2142689 14 -   2996164 GTGATTTGCTAACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2018875 14 -   2157725 GTGATTTGCTAACT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28453575 14 -  71996105 GTGATTTGCTAACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2161347 14 +   2316924 GTGATTTGCTAACT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2025353 14 -   3067355 GTGATTTGCTAACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171542517 10 - 171630274 ----TCTTCTAACT
i calJac3.chr4             C 0 I 4815
e dasNov3.JH561790            173862 6931 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I

a score=3213167.000000
s hg38.chr6_GL000254v2_alt    301473 583 +   4827813 C-TATCATAGGTCGGTAACCTCTATACATCTGGAAAGGCTAGATGTGGCAAATGTTTCCTTGTAAAAGTTTTGGGGGAAGCTGAGAGCAGCTTTCTCACATTATACACGCAGGTCTCCTATAAACGCCGGTACATCCTCCCAAAGCGTGATGGGAATCTCCAAATCGCTAAATGTGTCCTGTTACTCCGTTTCTCTTTTCCCACATCAACGTCTGGTAGAAGGAAGGCCAACTGCCCCATGGTCGCTACCATTCCACCCGTCCTCATCCGGGACTTCGCTGACCTTCCGGCCGTTAAGGCTGTTGTCTGTTGTCATCAGGACCAGGTAGGTCTCACCCAATTGGGACAGAGAGGTCCCCCGAGGACAGCATCTGCGCGGCGCCGTGGCCTAAAGAGGA-----GGCCAGGCCTCTCCCTAACTCCGCCTTCGCGGGCCCTGCACCCCAGCAGCCTCTGCGTGTTT---------CTTCCCGCCCGGCACACCCGCGGCCATCCAAAGGTGCTGTGTGCCGGCGGCCACCAGGTCACCGAGGTGGGGTGGGGAAGACAGGTTCGCCGCTGCTTCAGGCCTGGGATCTCTGCTGGAACTC
s panTro5.chr6              29276508 583 + 175400573 C-TATCATAGGTCGGTAACCTCTATACATCTAGAAAGGCTAGATGTGGCAAATGTTTCCTTGTAAAAGTTTTGGGGGAAGCTGAGAGCAGCTTTCTCACATTATACACGCGGGTCTCCTATAAACGCCGGTACATCCTCCCAAAGCGTGATGGGAATCTCCAAATCGCTAAATGTGTCCTGTTACTCCATTTCTCTTTTCCCACATCAACGTCTGGTAGAAGGAAGGCCAACTGCCCCATGGTCGCTACCATTCCACCCGTCCTCATCCGGGACTTCGCTGACCTTCCGCCCGTTAAGGCTGTTGTCTGTTGTCATCAGTACCAGGTAGGTCTCGCCCAATTGGGACAGAGAGGTCCCCCGAGGACCGGATCTGCGCGGCGCCGTGGCCTAAAGAGGA-----GGCCAGGCCACTCCCTAGCTCCGCCTTCGCGGGCCCTGCACCCCAGCAGCCTCTGCGTGGTT---------CTTCCCGCCCGGCACACCCGCGGCCATCCAAAGGTGCTGTGTCCCGGCGGCCACCAGGTCACCGAGGTGGGGTGGGGAAGACAGGTTCGCCTCTGCTTCAGGCCTGGGATCTCTGCTGGAACTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29522703 583 + 173848474 C-TATCATAGGTCGGTAACCTCTATACATCTGGAAAGGCTAGATGTGGCAAATGTTTCCTTGTAAAAGTTTTGGGGGAAGCTGAGAGCAGCTTTCTCACATTATACACGCGGGTCTCCTATAAACGCCGGTACATCCTCCCAAAGCGTGATGGGAATCTCCAAATCGCTAAATGTGTCCTGTTACTCCATTTCTCTTTTCCCACATCAACGTCTGGTAGAAGGAAGGCCAACTGCCCCATGGTCGCTACCATTCCACCCGTCCTCATCCGGGACTTCGCTGACCTTCCGGCCGTTAAGGCTGTTGTCTGTTGTCATCAGGACCAGGTAGGTCTCGCCCAATTGGGACAGAGAGGTCCCCCGAGGACCGGATCTGCGCGGCGCCGTGGCCTAAAGAGGA-----GGCCAGGCCACTCCCTAGCTCCGCCTTCGCGGGCCCTGCACCCCAGCAGCCTCTGCGTGGTT---------CTTCCCGCCCCGCACACCCGCGGCCATCCAAAGGTGCTGTGTCCCGGCGGCCACCAGGTCACCGAGGTGGGGTGGGGAAGACAGGTTCGCCGCTGCTTCAGGCCTGGGATCTCTGCTGGAACTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5319714 583 +   6154872 C-TATCATAGGTCGGTAACCTCTATACATCTGGAAAGGCTAGATGTGGCAAATGTTTCCTTGTAAAAGTTTTGGGGGAAGCTGAGAGCAGCTTTCTCACATTATACACGCAGGTCTCCTATAAACGCCGGTACATCCTCCCAAAGCGTGATGGGAATCTCCAGATCGCTAAATGTGTCCTGTTACTCCATTTCTCTTTTCCCACATCAACGTCTGGTAGAAGGAAGGCCAACTGCCCCATGGTCGCTACCATTCCACCCGTCCTCATCCGGGACTTCGCTGACCTTCCGGCCGTTAAGGCTGTTGTCTGTTGTCATCAGGACCAGGTAGGTCTCGCCCAATTGGGACAGAGAGGTCCCCCGAGGACCGGATCTGTGCGGCGCCGTGGCCTAAAGAGGA-----GGCCAGGCAACTCCCTAGCTCCGCCTTCGCGGGCCCTGCACCCTAGCAGCCTCTGCGTGGTT---------CTTCCCGCCCGGCACACCCGCGGCCATCCAAAGGTGCTGTGTCCCGGCGGCCACCAGGTCACCGAGGTGGGGTGGGGAAGACAGGTTCGCCGCTGCTTCAGGCCTGGGATCTCTGCTGGAACTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74332621 579 + 122973662 C-TATCATAGGTCGATAACCTCTATACATCTGGAAGGGCTAGATGTGGCAAATGTTTCCTTGTAAAAGTTTTGGGGGAAGCTGAGAGCAGCTTTCTCACATTATACACGCTGGCCTCCTATAAACGCCGGTACATCTTCCCAAAGCGTGATGGGAATCTCCAAAGCGCTAAATGTGGCCTGTTACTCCATTTCTCTTTTCCCACATCAAGGTCTGGTAGAAGGAAGGCCAACTGTCCCATGGCCGCTACCATTCCACCCGTCCTCATCCGGGACTTCGCTGACCTTCCGGCCGTTAAGGCTGTTGTCTGTTGTCATTAGGACCAGGTAGGTCTTGCCCAATTGGGACAGAGAGGTCCCCCGAGGACCCGATCTGCGCGGCGCCGTGGCCTAAAGAGGA-----GGCCAGGCCAGTCCCTAGCTCCGCTTTCGCGGGCCTTGCACCCCAGCAGCCTC----TGGTT---------CTTCCCGCCGGGCACACTCGCGGCCATCCAAAGGCGCTGTGTCCCGGCGGCCACTAGGTCACCGAGATGGGGTGGGGAAGACAGGTTCGTCGCTGCTTCAGGCCTGGGATCTCTGCTGGAACTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29489257 581 + 172585720 C-TATCATATGTCGGAAACCTCTAAACATCTGGAAGGGCTAGATGTGGCAAATGTTTCCTTGTAAAAGTTTTGGGGGAAGCTGAGAGCAGCTTTCCCATATTATACACAAAGTCCTTCTATAAACGCCGGTACATCTTCCCAAAGAGTGGTGGGCATCTCCAAAGCGCCAAATGTGGCCTGTTACTCCATTTCTCTCTTCCCACATCAAGGTCTGGTAGAAGGAAGGCCAACCGCCCCATGGACGCTACCATTCCACCCGTCCTCATCCGGGACTCCGCTCACCTTCCGGCCGTTAAGGCCATTGTCCGTTGCCATCAGGACCAGGTAGGTCTCGCCCAGCTGGGACAGAGAGGTCGCCCGAGAACCCGATCT--GCGGCGCCACGGCCTACAGAGAA-----GGCCGGGCCAGTCCCTAGCTCCGCCTTTGTGGGCCCTGAGCCCCAGCAGCCTCCACGTGCTT---------CTTCCCGCCCGGCACACCCGCCGCCGTTCAAAGGCGCTGTGTCCCGGCGGCCACCAGGTCACCGAGGTGGGGTGGGGAAGAGACGTTCGCCGCTGCTTCAGGACTAGGATCTCTGCTGGAACTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29150376 581 - 170955103 C-TATCATATGTCGGAAACCTCTAAACATCTGGAAGGGCTAGATGTGGCAAATGTTTCCTTGTAAAAGTTTTGGGGGAAGCTGAGAGCAGCTTTCCCATATTATACACAAAGTCCTTCTATAAACGCCGGTACATCTTCCCAAAGAGTGGTGGGCATCTCCAAAGCGCCAAATGTAGCCTGTTACTCCATTTCTCTCTTCCCACATCAAGGTCTGGTAGAAGGAAGGCCAACCGCCCCATGGACGCTACCATTCCACCCGTCCTCATCCGGGACTCCGCTCACCTTCCGGCCGTTAAGGCCATTGTCCGTTGCCATCAGGACCAGGTAGGTCTCGCCCAGCTGGGACAGAGAGGTCGCCCGAGAACCCGATCT--GCGGCGCCATGGCCTACAGAGAA-----GGCCGGGCCAGTCCCTCGCTCCGCCTTTGTGGGCCCTGAGCCCCAGCAGCCTCCACGTGCTT---------CTTCCCGCCCGGCACACCCGCCGCCGTTCAAAGGCGCTGTGTCCCGGCGGCCACCAGGTCACCGAGGTGGGGTGGGGAAGAGAGGTTCGCCGCTGCTTCAGGACTAGGATCTCTGCTGGAACTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2142703 581 -   2996164 C-TATCATATGTCGGAAACCTCTACACATCTGGAAGGGCTAGATGTGGCAAATGTTTCCCTGTAAAAGTTTTGGGGGAAGCTGAGAGCAGCTTTCCCATATTATACACAAAGTCCTTCTATAAACGCCGGTACATCTTTCCAAAGAGTGGTGGGCATCTCCAAAGCGCCAAATGTGGCCTGTTACTCCATTTCTCTCTTCCCACATCAAGGTCTGGTAGAAGGAAGGCCAACCGCCCCATGGACGCTACCATTCCACCCGTCCTCATCCGGGACTCCGCTCACCTTCCGGCCGTTAAGGCCATTGTCCGTTGCCATCAGGACCAGGTAGGTCTCGCCCAGCTGGGACACAGAGGTCGCCCGAGAACCCGATCT--GCGGCGCCATGGCCTACAGAGAA-----GGCCGGGCCAGTCCCTAGCTCCTCCTTTGTGGGCCCTGAGCCCCAGCAGCCTCCACGTGCTT---------CTTCCCGCCCGGCACACCCGCCGCCGTTCAAAGGCGCTGTGTCCCGGCGGCCACCAGGTCACCGAGGTGGGGTGGGGAAGAGAGGTTTGCCGCTGCTTCAGGACTAGGATCTCTGCTGGAACTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2018889 590 -   2157725 C-TATCATATGTCGGTAACCTCTACACATCTGGAAGGGCTAGATGTGGCAAATGTTTCCTTGTAAAAGTTTTGGGGGAAGCTGAGAGCAGCTTTCCCATATTATACACAAAGTCCTTCTATAAATGCCAGTAAATTTTCCCAAAGCGTGGTGGGCATCTCCAAAGCGCCAAATGTGGCCTGTTACTCCATTTCTCTCCTCCCACATCAAGTTCTGGTAGAAGGAAGGCCAACCGCCCCACGGACGCTACCGTTCCACCCGTCCTCATCCGGGACTCCGCTCACCTTCCGGCCGTTAAGGCCATTGTCCGTTGCCATCAGGACCAGGTAGGTCTCGCCCAATTGGGACAGAGAGGTCGCCCGAGGACCAGATCT--GCGGCGCCGTGGCCTAAAGAGAA-----GGCCGAGCCAGTCCCTAGCTCCGCCTTCGCGGGCCCTGCGCCCCAGCAGCCTCCGCGTGGTTCTTCCCGCCCTTCCCGCCCGGCACACCCGCCGCCATCCAAAGGCACTGTGTCCCGGCGGCCACCAGGTCACCGAGGTGGGGTGGGGAAGAGAGGTTCGCCGCTGCTTCAGGACTGGGATCTCTGCTGGAACTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28453589 582 -  71996105 CTTATCATATGTCGGAAACCTCTACACATCTGGAAGGGCTAGATGTGGCAAATGTTTCCTTGTAAAAGTTTTGGGGGAAGCTGAGAGCAGCTTTCCCGTATTATACACAAAGTCCTTCTATAAACGCCGGTACATCTTCCCAAAGCGTGGTGGGCATCTCCAAAGCGCCAAATGTGGCCTGTTACTCCATGTCTCTCTTCCCACATCAAGGTCTGGTAGAAGGAAGGCCAACCGCCCCATGGACGCTACCATTTCACCCGTCCTCATCCGGGACTCCGCTCACCTTCCGGCCGTTAAGGCCATTGTCCGTTGCCATCAGGACCAGGTAGGTCTCGCCCAACTAGGACAGAGAGGTCGCCCGACAACCCGATCT--GCGGCGCCGTGGCCTACAGAGAA-----GGCCGGGCCAGTCCATAGCTCCGCCTTTGCGGGCCCTGAGCCCCAGCAGCCTCCGCGTGGTT---------CTTCCCGCCCGGCACACCCGCCGCCATTCAAAGGCGCTGTGTCGCGGCGGCCACCAGGTCACCGAGGTGGGGTGGGGAAGAGAGGGTCGCCGCTGCTTCAGGACTGGGATCTCTGCTGGAACTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2161361 590 +   2316924 C-TATCATATGTCGGAAACCTCTACACATCTGGAAGGGCTAGATGTGCCAAATGTTTCCTTGTAAAAGTTTTGGGGGAAGCTGAGAGCAGCTTTCCCATATTATACACAAAGTCCTTCTATAAATGCCAGTAAATTTTCCCAAAGCGTGGTGGGCATCTCCAAAGCGCCAAATGTGGCCTGTTACTCCATTTCTCTCCTCCCACATCAAGTTCTGGTAGAAGGAAGGCCAACCGCCCCACGGACGCTACCGTTCCACCCGTCCTCATCCGGGACTCCGCTCACCTTCCGGCCGTTAAGGCCATTGTCCGTTGCCATCAGGACCAGGTAGGTCTCGCCCAGTTGGGACAGAGAGGTCGCCCGAGGACCAGATCT--GCGGCGCCGTGGCCTAAAGAGAA-----GGCCGGGCCAGTCCCTAGCTCCGCCTTCGCGGGCCCTGCGCCCCAGCAGCCTCCGCGTGGTTCTTCCCGCCCTTCCCGCCCGGCACACCCGCCGCCATCCAAAGGCACTGTGTCCCTGCGGCCACCAGGTCACCGAGGTGGGGTGGGGAAGAGAGGTTCGCCGCTGCTTCAGGACTGGGATCTCTGCTGGAACTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2025367 586 -   3067355 C-TATCATATGTCGGTAACCTGTACACATCTGGAAGGGCTAGATGTGGCAAATGTTTCCTTGTAAAAGTTTTGGGGGAAGCTGAGAGCAGCTTTCCCATATTATACACAAAGTCATTCTATAAATGCCAGTAAATTTTCCCAAAGCATGATGGGCATGTCCAGAGCGCCAAATGTGGCCTGTTACTCCATTTCACTCTTCCCACATCAAGGTCTGGTAGAAGGAAGGCCAACCGCCGCATGGACGCTACCGTTCCACCCGTCCTCATCCGGGACTCCGCTCACCTTCCGGCCGTTAAGGCCATTGTCCGTTGCCATCAGGACCAGGTAGGTCTCGCCCAATTGGGACAGAGAGGTCGCCCGAGGACCCGATAT--GCGGCGCCGTGGCCTAAAGAGAAGGCTGGGCCGGGCCAGTCCCTAGCTCCGCCTTCGCGGGCCCTGCGCCCCAGCAGCCTCCGCACGGTT---------CTTCCCGCCCGGCACACCCGCCGCCATTCAAAGGCGCTGTGTCCGGGCGTCCACCAGGTCACCGAGGTGGGGTGGGGAAGAGAGGTTCGCCGCTGCTTCAGGACTGGGATCTTTGCTGGAACTC
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            173862 6931 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171542527 4815 - 171630274 I

a score=964923.000000
s hg38.chr6_GL000254v2_alt    302056 163 +   4827813 TCTATATTTTTTAA---TCAATTTAAAATTTATAATAATGTATGTTTTTTAGGTATTGTTTTTACT-GACAAATTTTATTTCTAGATCTTTCATCAGTTTTCTCACGCTGGTCAACAAATAGGCCTTCATCACACACTAATTTGTAATGTCATTCTTTTCATATTTA
s panTro5.chr6              29277091 163 + 175400573 TCTACATTTTTTAA---TCAATTTAAAATTTATAATAATGTATGTTTTTTAGGTATTGTTTTTACT-GACAAATTTTATTTCTAGATCTTTCATCAGTTTTCTCACGCTGGTCAACAAATAGGCCTTCATCACACACTAATTTGTAATGTCATTCTTTTCATATTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29523286 163 + 173848474 TCTACATTTTTTAA---TCAATTTAAAATTTATAATAATGTATGTTTTTTAGGTATTGTTTTTACT-GACAAATTTTATTTCTAGATCTTTCATCAGTTTTCTCACGCTGGTCAACAAATAGGCCTTCATCACACACTAATTTGTAATGTCATTCTTTTCATATTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5320297 163 +   6154872 TCTACAGTTTTAAA---AAAATTTAAAATTTATAATAATGTATGTTTTTTAGGTATTGTTTTTACT-GACAAATTTTATTTCTAGATCTTTCATCAGTTTTCTCATGCTGGTCAACAAATAGGCCTTCATCACACACTAATTTGTAATGTCATTCTTTTCATATTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74333200 146 + 122973662 TCCACACTTTTTAA---TC-----------------AATGTATGTTTTTTAGGTATTGTTTTTACT-GACAAATTTTATTTCTAGATCTTTCATCAGTTTTCCCATGCTGGTCAACAAATAGGCCTTTATCACACACTAATTTGTAATGTCATTCTTTTCATATTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29489838 163 + 172585720 TCTACATTTTTTAA---TCAATTTGAAATTTATAATAATGTATGTTTTTTAGGTATTGTTTTTACT-GACAAAGTTTATTTCTAGATCTTTCATCAGTTTTCCCATACTGATTAACAAATAGGCCTTCATCACACACTAATTTGTAATGTCATTCTTTTTGTAATTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29150957 163 - 170955103 TCCACATTTTTTAA---TCAATTTGAAATTTATAATAATGTATGTTTTTTAGGTATTGTTTTTACT-GACAAAGTTTATTTCTAGATCTTTCATCAGTTTTCCCATACTGATCAACAAATAGGCCTTCATCACACACTAATTTGTAATGTCATTCTTTTTGTAATTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2143284 163 -   2996164 TCCACATTTTTTAA---TCAATTTGAAATTTATAATAATGTATGTTTTTTAGGTATTGTTTTTACT-GACAAAGTTTATTTCTAGATCTTTCATCAGTTTTCCCATACTGATCAACAAATAGGCCTTCATCACACACTAATTTGTAATGTCATTCTTTTTGTAATTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2019479 163 -   2157725 TCCACATTGTTTAA---TCAATTTGAAATTTATAATAATGTATGTTTTTTAGGTATTGTTTTTACT-GACAAATTTTATTTCTAGATCTTTCATCAGTTTTCCCATACTGATCAACAAATAGGCCTTCATCACACACTAATTTGTAATGTCATTCTTTTTGTATTTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28454171 163 -  71996105 TCCACATTTTTTAA---TCAATTTGAAATTTATAATAATGTATGTTTCTTAGGTATTGTTTTTACT-GACAAATTTTATTTCTAGATCTTGCATCAATTTTCCCATACTGATCAACAAATAGACCTTCATCACACACTAATTTGTAATGTCATTCTTTTTGTATTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2161951 162 +   2316924 TCCACATTTTTTAA---TCAATTTGAAATTTATAATCATGTAT-TTTTTTAGGTATTGTTTTTACT-GACAAATTTTATTTCCAGATTTTTCATCAGTTTTCCCATACTGATCAACAAATAGGCCTTCATCACACACTAATTTGTAATATCATTCTTTTTGTATTTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2025953 163 -   3067355 TCCACATTTTTAAA---TCAATTTGAAATTTTTAATAATGTATGTTTTTTAGGTATTGTTTTTACT-GACAAATTTTATTTCTAGATCTTTCATCAGTTTTCCCACACTGATCAACGAATAGGCCTTCATCACACACTAATTTGTAATGTCtttctttttgtattta
i colAng1.NW_012115566v1   C 0 I 342
s dasNov3.JH561790            180793 163 -    302817 tttatacatttaaatatttgatttgaaatttatataaatgtatatttttgataattagatttaaataGACAAA---TATTTCTAGACATTTCATTAATTTTCCCATGCTATTTAACAAATAGTCCTTCATTACTCATTAATTTGTAATGCCACT-TTTTCATAGTCA
i dasNov3.JH561790         I 6931 C 0
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171542527 4815 - 171630274 I

a score=21349.000000
s hg38.chr6_GL000254v2_alt    302219 6 +   4827813 CTGTTG
s panTro5.chr6              29277254 6 + 175400573 CTATTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29523449 6 + 173848474 CTATTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5320460 6 +   6154872 CTATTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74333346 6 + 122973662 CTATTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29490001 6 + 172585720 ATATAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29151120 6 - 170955103 ATATTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2143447 6 -   2996164 ATATTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2019642 6 -   2157725 ATATTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28454334 6 -  71996105 ATATTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2162113 6 +   2316924 ATATTG
i manLeu1.NW_012104165v1   C 0 C 0
s dasNov3.JH561790            180956 6 -    302817 ATATTC
i dasNov3.JH561790         C 0 C 0
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171542527 4815 - 171630274 I
e colAng1.NW_012115566v1     2026116 342 -   3067355 I

a score=383191.000000
s hg38.chr6_GL000254v2_alt    302225 61 +   4827813 TAATGTAAAACACACTAGGGTCTGTTTTGAGG----CAATGTTGTTTCAATCATATGCAAATCAA
s panTro5.chr6              29277260 61 + 175400573 TAATGTAAAACACACTAGGGTCTGTTTTGAGG----CAATGTTGTTTCAATCATATGCAAATCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29523455 61 + 173848474 TAATGTAAAACACACTAAGGTCTGTTTTGAGG----CAATGTTGTTTCAATCATATGCAAATCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5320466 61 +   6154872 TAATGTAAAACACACTAGGGTCTGTTTTGAGA----CAATGTTGTTTCAATCATCTGCAAATCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74333352 61 + 122973662 TAATGTAAAACGCACTAGGGTCTGTTTTGAGG----CAATGTTGTTTCAATCATCTGCAAATCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29490007 61 + 172585720 TAATGTAAAATGCACTAGAGTCTGTTTTGAGG----CAATGTTGTTTCAATCATCTGCAAATCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29151126 61 - 170955103 TAATGTAAAATGCACTAGAGTCTGTTTTGAGG----CAATGTTGTTTCAATCATCTGCAAATCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2143453 61 -   2996164 TAATGTAAAATGCACTAGAGTCTGTTTTGAGG----CAATGTTGTTTCAATCATCTGCAAATCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2019648 61 -   2157725 TAATGTAAAATGCACTAGGGTCTGTTTTGAGG----CAATGTTGTTTCAATCATCTGCAAATCAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28454340 61 -  71996105 TAATGTAAAATGCACTAGAGTCTGTTTTGAGG----CAATGTTGTTTCAATCATCTGCAAATCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2162119 61 +   2316924 TAATGTAAAATGCACTAGGGTCTGTTTTGAGG----CAATGTTGTTTCAATCATCTGCAAATCAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2026458 61 -   3067355 TAATGTAAAATGCACTAGGGTCTGTTTTGAGG----CAATGTTGTTTCAATCATCTGCAAATCAA
i colAng1.NW_012115566v1   I 342 C 0
s dasNov3.JH561790            180962 64 -    302817 TCAGGTAAAATGAACT-GGGCCTGTTTTGGAGCTTTCCATTTCATTTTAATCATCTTCAAAGCAG
i dasNov3.JH561790         C 0 I 13
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171542527 4815 - 171630274 I

a score=1766328.000000
s hg38.chr6_GL000254v2_alt    302286 317 +   4827813 ACTC-tttttcttttttgagacagagcctcactctgtcacccggactggaatgcagtggcacaatctctgttcactgcagcctcggcctcccaggctcacgtaatcctcccactacagcctcccgagtagcggggactacaggcacaggccaccacgcccggctatttgtttg---ttttttgtggagacaggggtgtctcactctgttgcccaggctggtctccaactcctgagttcaagctatcctcctgcctaggcctcccaaaatgttgggattacaggcaggagccactgctcttgaccCCAAATCAAACCCTTAG
s panTro5.chr6              29277321 315 + 175400573 ACTC-tttttcttttttgagacagagcctcactctgtcacccggactggagtgcagtggcacaatctctgttcactgcagcctcggcctcccaggctcacgtaatcctcccaatacagcctcccgagtagtggggactacaggcacaggccaccacgcctggctatttgtttg---ttttttgtggagacaggggt--ctcactctgttgcccagggtggtctccaactcctgagttcaagctatcctcctgcctaggcctcccaaagtgttgggattacaggcaggagccactgctcttgaccCCACATCAAACCCTTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29523516 315 + 173848474 ACTC-tttttcttttttgagacagagcctcactctgtcacccggactggagtgcagtggcacaatctctgttcactgcagcctcggcctcccaggctcacgtaatcctcccactacagcctcccgagtagcggggactacaggcacaggccaccacgcctggctatttgtttg---ttttttgtggagacaggggt--ctcactctgttgcccagggtggtctccaactcctgagttcaagctatcctcctgcctaggcctcccaaagtgttgggattacaggcaggagccactgctcttgaccCCAAATCAAACCCTTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5320527 315 +   6154872 ACTC-tttttcttttttgagacagagcctcactctgtcacccggactggagtgcagtggcacaatctctgttcactgcagcctcggcctcccaggctcacgtaatcctcccactacagcctcccgagtagtggggactacaggcacaggccaccacgcccggctatttgtttg---ttttttgtggagacaggggt--ctcactctgttgcccaggctggtctccaactcctgagttcaagctatcctcctgcctaggcctcccaaagtgttgggattacaggcaggagccactgctcttgaccCCAAATCAAACCCTTAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74333413 313 + 122973662 A--C-tttttcttttttgagacagagcctcactctgtcacccggactggagtgcagtggcacaatctctgttcactgcagcctcgacctcccaggctcacgtaatcctcccactacagcctcccgagtagctgggactacaggcacaggccaccacgcccggcttttttttga---ttttctgtggagacaggggt--ctcactctgttgcccaggctggtctccaactcctgagttcaagctatcctcctgcctaggcctcccaaagtgttgggattacagggaggagccactgctcttgaccCCAAATCAAACCCTTAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29490068 313 + 172585720 ACTC------tttttctgagacagagcctcactctgtcacccggactggagtgcagtggcacagtctctgtccactgcagcctcgacctcccaggctcaagtagtcttcccactacagcctcccgagtagctgggactacaggcacgggccaccacgcccggctatttttttgattttttttgtggagacaaggat--ctcactctattgcctaggctggtctccaactcctgagttcaaactatcctcctgcctaggcctcccaaaatgttgggattacaggcaggaaccactgctcctgaccCCAAATCAAACTCTTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29151187 313 - 170955103 ACTC------tttttctgagacagagcctcactctgtcacccggactggagtgcagtggcacaatctctgtccactgcagcctcgacctcccaggctcaagtagtcttcccactacagcctcccgagtagctgggactacaggcacgggccaccacgcccggctatttttttgattttttttgtggagacaaggat--ctcactctattgcctaggctggtctccaactcctgagttcaaactatcctcctgcctaggcctcccaaaatgttgggattacaggcaggaaccactgctcctgaccCCAAATCAAACTCTTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2143514 313 -   2996164 ACTC------tttttctgagacagagcctcactctgtcacccggactggagtgcagtggcacaatctctgtccactgcagcctcgacctcccaggctcaagtagtcttcccactacagcctcccgagtagctgggactacaggcacgggccaccacgcccggctatttttttgattttttttgtggagacaaggat--ctcactctattgcctaggctggtctccaactcctgagttcaaactatcctcctgcctaggcctcccaaaatgttgggattacaggcaggaaccactgctcctgaccCCAAATCAAACTCTTAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2019709 316 -   2157725 ACTC--TTGGtttttctgagacagagtctcactctgtcacccggactggagtgcagtggcacaatctctgtccactgcagcctcgacctcccaggctcaagcagtcttcccactacagcctcccgagtagctgagactgcaggcacgggccaccacgcccggctatttttttga-tttttttgtggagacaaggat--ctcactctgttgcctaggctggtctccaactcctgagttcaaactatcctcctgcctaggcctcccaaaatgttgggattacaggcaggaaccactgctcctgaccCCAAATCAAACTCTTAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28454401 318 -  71996105 ACTCtttttctttttctgagacagagcctcactctgtcacctggactggagtgcagtggcacaatctctgtccactgcagcctcgacctcccaggctcaagtagtcttcccactacagcctcccgagtagctgggactgcaggcacaggccaccacgcccggctattttttgga-tttttttgtggagacaaggat--ctcactctattgcctaggctggtctccaactcctgagttcaaactatcctcctgcctaggcctcccaaaatgttgggattacaggcaggaaccactgctcctgaccCCAAATCAAACTCTTAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2162180 319 +   2316924 Attcttttggtttttctgagacagagcctcactctgtcacccggactggagtgcagtggcacaatctctgtccactgcagcctcgacctcccaggctcaagtagtcttcccactacagcctcccgagtagctgggactgcaggcacgggccaccacgcccggctatttttttgattttttttgtggagacaaggat--ctcactctgttgcctaggctggtctccaactcctgagttcaaactatcctcctgcctaggcctcccaaaatgttgggattacaggcaggaaccactgctcctgaccCCAAATCAAACTCTTAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2026519 313 -   3067355 Attc------tttttctgagacagagcctcactctgtcacccggactggagtgcagtggcactatctctgttcactgcagcctcgacctcccaggctcaagtagtcttcccactacagcctcctgagtaactgggactacaggcgtgggccaccacgcccggctattttttttaatttttttgtggagacaaggat--ctcactctgttgcctaggttggtctccaactcctgagttcaaactatcctcctgcctaggcctcccaaaatgttgggattacaggcaggaaccactgctcctgacTCCAAATCAAACTCTTAG
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            181026  13 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171542527 4815 - 171630274 I

a score=2030984.000000
s hg38.chr6_GL000254v2_alt    302603 353 +   4827813 TAATATTTGAT--AGTATTTCAGTGCTGGCCAGAGCAAATCCTTGCTTATTATTCGTTTATGAAAATGGCTTGACTCTTCTAAGCTGTAATTTGACCAAATAAATCTTGAAATAAATTTGTTACAATCCAAACACAATGCAGACAATTATTTGAAATGTCTGCATTTAAATTTATATTTA-AA--AGTTATTTTTTGAAGAATGTGGCATGTCTCATTTTATTTGTTTTTCCCTTTTTCTTGGTAAAGATTAATAATACCT-----TAAAAATGTTCAACATA---TGTTAAGTTCATCTTTATTGATATC--ATTTTATTTAATTGCTCATTGCTTATTGTTGTTAG-------AGCTATA-----TATGTATTTTTTA
s panTro5.chr6              29277636 356 + 175400573 TAATATTTGAT--AGTATTTCAATGCTGGCCAGAGCAAATCCTTGCTTATTATTCGTTTATGAAAATGGCTTGACTCTTCTAAGCTGTAATTTGACCAAATAAATCTTGAAATAAATTTGTTACAATCCAAACACAATGCAGACAATTATTTGAAATGTCTGCATTTAAATTTATATTTA-AA--AGTTATTTTTTGAAGAATGTGGCATGTCTCATTTTATTTGTTTTTCCCTTTTTCTTGGTAAAGATTAATAATACCT-----TAAAAATGTTCAACATA---CGTTAAGTTCATCTTTATTGATATC--ATTTTATTTAATTGCTCATTGCTTATTGTTGTTAG----GAGAGCTATA-----TATGTATTTTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29523831 356 + 173848474 TAATATTTGAT--AGTATTTCAATGCTGGCCAGAGCAAATCCTTGCTTATTATTCGTTTATGAAAATGGCTTGACTCTTCTAAGCTGTAATTTGACCAAATAAATCTTGAAATAAATTTGTTACAATCCAAACACAATGCAGACAATTATTTGAAATGTCTGCATTTAAATTTATATTTA-AA--AGTTATTTTTTGAAGAATGTGGCATGTCTCATTTTATTTGTTTTTCCCTTTTTCTTGGTAAAGATTAATAATACCT-----TAAAAATGTTCAACATA---CGTTAAGTTCATCTTTATTGATATC--ATTTTATTTAATTGCTCATTGCTTATTGTTGTTAG----GAGAGCTATA-----TATGTATTTTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5320842 350 +   6154872 TAATATTTGAT--AGTATTTCAATGCTGGCCAGAGCAAATCCTTGCTTATTATTCGTTTATGAAAATGGCTTGACTCTTCTAAGTTGTAATTTGACCAAATAAATCTTGAAATAAATTTGTTACAATCCAAACACAATGCAGACAATTATTTGAAATGTCTGCATTTAAATTTATATTTA-AA--AGTTATTTTTTGAAGAATGTGGCATGTCTCATTTTATTTGTTTTTCCCTTTTTCTTGGTAAAGATTAATAATACTT-----TAAAAATGTTCAACATA---TGTTAAGTTCATCTTTATTGAT-----ATTTTATTTAATTGCTCATTGC---TTGTTGTTAG----GAGAGCTATA-----TATGTATTTTTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74333726 354 + 122973662 TAATATTTGAT--AGTATTTCAATGCTGGCCAGAGCAAATCCTTGCTTATTATTCGTTTATGAAAATGGCTTGACTGTTCTAAGCTGTAATTTGACCAAATAAATCTTGAAATAAATTTGTTACAATCCAAACACAATGCAGACAATTATTTGAAATGTCTGCATTTAAATTTATATTT---A--AGTTATTTTTTGAAGAATATGGCATGTCTCATTTTATTTGTTTTTCCCTTTTTCTTGGTAAAGATTAATAATACTT-----TTAAAATGTTCAACGTA---TGTTAAGTTCATCTTTATTGATATC--ATTTTATTTAATTGCTCATTGCTTATTATTGTCAG----GAGAGCTATA-----TATGTATTTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29490381 348 + 172585720 TAATATTTGAT--AGTATTTCAGTGCTGGCCAGAGCAAATCCTTGCTTATTATTCGTTTATGAAAATGGTTTGACTCTTCTAAGCTGTAATTTGATCAAATAAATCTTGAAATCAATTTGTTACAATCCAAACACAATGCAGACAATTATTGGAAATGTCTGCATTTAAATTTGTATTTTAAAATAGTTGTTTTTTGAAGAATGTGGCAT-----------TTTGTTTTTCCCTTTTTCTTGGTAAAGATTAATAATACTT-----TAAAAATGTTCAACATATCTTGTTAAGTTTATCTTTACTGATATC--ATTTTATTTAATTGCTCATTGCTTATTGTTGTTAG-------AGTTATA-----TATGTATATTTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29151500 347 - 170955103 TAATATTTGAT--AGTATTTCAGTGCTGGCCAGAGCAAATCCTTGCTTATTATTCGTTTATGAAAATGGTTTGACTCTTCTAAGCTGTAATTTGATCAAATAAATCTTGAAATCAATTTGTTACAATCCAAACACAATGCAGACAATTATTGGAAATGTCTGCATTTAAATTTGTATTTT-AAATAGTTGTTTTTTGAAGAATGTGGCAT-----------TTTGTTTTTCCCTTTTTCTTGGTAAAGATTAATAATACTT-----TAAAAATGTTCAACATATCTTGTTAAGTTTATCTTTACTGATATC--ATTTTATTTAATTGCTCATTGCTTATTGTTGTTAG-------AGTTATA-----TATGTATATTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2143827 346 -   2996164 TAATATTTGAT--AGTATTTCAGTGCTGGCCAGAGCAAATCCTTGCTTATTATTCGTTTATGAAAATGGTTTGACTCTTCTAAGCTGTAATTTGATCAAATAAATCTTGAAATCAATTTGTTACAATCCAAACACAATGCAGACAATTATTGGAAATGTCTGCATTTAAATTTGTATTTT-AAATAGTTGTTTTTTGAAGAATGTGGCAT-----------TTTGTTTTTCCCTTTTTCTTGGTAAAGGTTAATAATACTT-----TAAAAATGTTCAACATATCTTGTTAAGTTTATCTTTACTGATATC--ATTTTATTTAATTGCTCATTGCTTATTGTTGTTAG-------AGTTATA-----TATGTATATT-TA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2020025 347 -   2157725 TAATATTTGAT--AGTATTTCAGTGCTGGCCAGAGCAAATTCTTGCTTATTATTCGTTTATGAAAATGGTTTGACTCTTCTAAGCTGTAATTTGATCAAATAAATCTTGAAATCAATTTGTTACAATGTAAACACAATGCAGACAATTATTGGAAATGTCTGCATTTAAATTTATATTTA-AAATAGTTGTTGTTTGAAGAATGTGGCAT-----------TTTGTTTTTCCCTTTTTCTCGGTAAAGATGAATAATACTT-----TAAAAATGTTCAACATATCTTGTTAAGTTTATCTTTATTGATATC--ATTTTATTTAATTGCTCATTGCTTATTGTTGTTAG-------AGTTATA-----TATGTATATTTTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28454719 343 -  71996105 TAATATTTGAT--AGTATTTCAGTGCTGGCCAGAGCAAATC----CTTATTATTCGTTTATGAAAATGGTTTGACTCTTCTAAGCTGTAATTTGATCAAATAAATCTTGAAATCAATTTGTTACAATCCAAACACAATGCAGACAATTATTGGAAATGTCTGCATTTAAATTTATATTTA-AAATAGTTGTTTTTTGAAGAATGTGGCAT-----------TTTGTTTTTCCCTTTTGCTCGGTAAAGATTAATAATACTT-----TAAAAATGTTCAACATATCTTGTTAAGTTTATCTTTATTGATATC--ATTTTATTTAATTGCTCATTGCTTATTGTTGTTAG-------AGTTATA-----TATGTATATTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2162499 340 +   2316924 TAATATTGGAT--AGTATTTCAGTGCTGACCAGAGCAAATCCTTGCTTATTATTCGTTTATGAAAATGGTTTGACTCTTCTAAGCTGTAATTTGATCAAATAAATCTTGAAATCAATTTGTTACAATCCAAACACAATGCAGACAATTATTGGAAATGTCTGCATTTAAATTTATATTTA-AAATAGTTTTTTTTTGAAGAATGTGGCAT-----------TTTGTTTTTCCCTTTTGCTCGGTAAAGATTAA-AATACTT-----TAAAAATGTTCAACATATCTTGTTAAGTTTATCTTTATTGATATC--ATTTTATTTAATTGCTCATTGCTTATTGTTGTTAG-------AGTTA-----------TATATTTTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2026832 347 -   3067355 TAATATTTGAT--AGTATTTCAGTGCTGGCCAGAGCAAATCCTTGCTTATTATTCGTTTATGCAAATGGTTTGACTCTTCTAAGCTGTAATTTGATCAAATAAATCTTGAAATCAATTTGTTACAATCCAAACACAATGCAGACAATTATTGGAAATGTCTGCATTTAAATTTATATTTA-AAATAGTTGTTTTTTGAAGAATGTGACAT-----------TTTGTTTTCCCCCTTTTCTTGGTAAAGATTAATAATACTT-----TAAAAATGTTCAACATATCTTGTTAAGTTTATCTTTATTGATATC--ATTTTATTTAATTGCTCATTGCTTATTGTTGTTAG-------AGTTATA-----TATGTATATTTTA
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH561790            181039 372 -    302817 TAATGCTTGATAAAGCATTTCAGTACCTGGCAGAGCAAATCCTTCCTAATTACTC-TTTCTAAAAATGTCTTGCCCCTTCTAACCT---ATTTTTCCAAAAAATTTTTGAAATACATTTGTTACAATTCAAATGTAATGTAGGAAATTGTTTGAAATATCTGCATTAAACTTTACAGTTT-AAATAATGATTTTCTATTTATTTTTATTCATCCCAATTTATTCCTTTTCTTTTATCTTTTGGTAAAGACGAGTAATACTTTCTCATAAAAATGTTCCACATA---TCTTAAGTTTATCTTTATTGATCTCATATTTTATTTAATTGCTTATTGTTTAGTGTTGATTGAGAAGAAAGTTATATATTTTATATATTCTTTA
i dasNov3.JH561790         I 13 C 0
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171542527 4815 - 171630274 I

a score=1075831.000000
s hg38.chr6_GL000254v2_alt    302956 204 +   4827813 AATTAAAttttttttt------taacttttattttaggtttaggggtacatatgcaggtttgttacttgagtaaattgtgtgttgctgaggtttggtgttcaaatcattttgtcacccagatagtgagcatagtacccaataagtagtttttcaatcctcaccctccttcctcctgccaccctcaggtaggcccaggtgtctgttgttcc
s panTro5.chr6              29277992 203 + 175400573 AATTAAAttttttttt-------aacttttattttaggtttaggggtacatatgcaggtttgttacttgagtaaattgtgtgttgctgaggtttggtgttcaaatcattttgtcacccagatagtgagcatagtacccaataagtagtttttcaatcctcaccctccttcctcctgccaccctcaggtaggcccaggtgtctgttgttcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29524187 203 + 173848474 AATTAAAttttttttt-------aacttttattttaggtttaggggtacatatgcaggtttgttacttgagtaaattgtgtgttgctgaggtttggtgttcaaatcattttgtcacccagatagtgagcatagtacccaataagtagtttttcaatcctcaccctccttcctcctgccaccctcaggtaggcccaggtgtctgttgttcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5321192 209 +   6154872 AATTAATTTttttttc-ttttttaacttttattttaggtttaggggtacatatgcaggtttgttacttgagtaaattgtgtgttgctgaggtttggtgttcaaatcattttgtcacccagatagtgagcatagtacccaataagtagtttttcaacccttaccctccttccttctgccaccctcaggtaggcccaggtgtctgttgttcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74334080 208 + 122973662 AATTAAATTTttttttctttcttaacttttattttaggtttaggggtacatctgcaggtttgttacttgagtaaat--tgtgttgctaaggtttggtggtcaaatgattttgttacccagatagtgagcttagtacccaataagtagtttttcaaccctcacagtgcttcctcctgccaccctcaggtaggcccagctgtctgttgttcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29490729 207 + 172585720 AATT--TTTttttttc-ttttttaacttttattttaggtttaggggtacatatggaggtttgttacttgagtaaattgtgttttgctaaggtttggtgttcaaatgattttgtcacccagatagtgagcatagtacccaatcagtagtttttcaaccctcaccttccttccacccgccaccatcaggtaggtccaggtgtctattgtttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29151847 207 - 170955103 AATT--TTTttttttc-ttttttaacttttattttaggtttaggggtacatatggaggtttgttacttgagtaaattgtgttttgctaaggtttggtgttcaaatgattttgtcacccagatagtgagcatagtacccaatcagtagtttttcaaccctcaccttccttccacccgccaccatcaggtaggtccaggtgtctattgtttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2144173 207 -   2996164 AATT--TTTttttttc-ttttttaacttttattttaggtttaggggtacatatggaggtttgttacttgagtaaattgtgttttgctaaggtttggtgttcaaatgattttgtcacccagatagtgagcatagtacccaatcagtagtttttcaaccctcaccttccttccacccgccaccatcaggtaggtccaggtgtctattgtttc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2020372 208 -   2157725 AATT-AATTttttttc-ttttttaacttttattttagggttaggggtacatatgcaggtttgttacttgagtacattgtgttttgctaaggtttggtgttcaaatgattttgtcacccagatagtgagcatagtacccaatcagtagtttttcaaccctcaccctccttccacccgccaccctcaggtaggtccagatgtctattgttcc
i cerAty1.NW_012001495v1   C 0 I 4596
s chlSab2.chr17             28455062 202 -  71996105 AATTAATTTttttttc-ttttttaac-----ttttaggtttaggggtacatatgcaggtttgttacttgagtaaattgtgttttggtaaggtttggtgttcaaatgattttgtcacccagatagtgagcatagtacccactcagtagtttttcaaccctcaccctccttcctcccgccaccctcaggtaggtccagatgtctattgtt--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2162839 207 +   2316924 AATTAATTTttttttc-ttttttaacttttattttaggtttaggggtgcatatgcaggtttgttacttgagtaaattgtgttttggtaaggtttggtgttcaaatgattttgtcacccagatagtgagcatagtacccactcagtagtttttcaaccctcaccctccttcctcccgccaccctcaggtaggtccagatgtctattgtt--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2027179 201 -   3067355 AGTTAAtttttttttc----tttaac-----ttttaggtttaggggtacatatgcaggtttgttacttgagtaaattgtgttttgctaaggtttggtgttcaaatgattttgtcacccagatagtgagcatagtacccaatcagtagtttttcaaccctcaccctccttccacccgccaccgtcaggtaggtccaggtgtccattgttcc
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            181411   0 -    302817 C
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171542527 4815 - 171630274 I

a score=3940.000000
s hg38.chr6_GL000254v2_alt    303160 2 +   4827813 cc
s panTro5.chr6              29278195 2 + 175400573 cc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29524390 2 + 173848474 cc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5321401 2 +   6154872 cc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74334288 2 + 122973662 cc
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             28455264 1 -  71996105 -c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2163046 1 +   2316924 -c
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2027380 2 -   3067355 cc
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            181411 0 -    302817 C
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171542527 4815 - 171630274 I
e cerAty1.NW_012001495v1     2020580 4596 -   2157725 I
e macNem1.NW_012011356v1     2144380 0 -   2996164 C
e macFas5.chr4              29152054 0 - 170955103 C
e rheMac8.chr4              29490936 0 + 172585720 C

a score=4462885.000000
s hg38.chr6_GL000254v2_alt    303162 807 +   4827813 tctttgtgtctgtgtgtactcaatgtttagctcatacttataagtgagaacatgtggtatttggttttctgtttttgcattaattcacttaggataatggcctccagctgccatccatgctgttgcaagggacatgatttcattctttttatggttgcatagtattctgtggtgtatatatgtcacattttctttatccagtccaccactgatgggcatctagattgattctatgtctttgctactgtgaatagtgctgtgatgaacatgcgagtgaatgtgtctttttggtagaacaatttttatttctttgggtatatacccagtaatgggattgttaggtcaaatggtagttctgagttctttgagaaatctctaaactgttttccactgtggctgaactaattgaaattcccaccagccgtgtgtaagtattccattttctctgcaacctcactaacgt--gttattttttgactttttaataatgtccattctgactggtgtgagatggtatttcattgtggttttgatttgcctttccctaacgattagtgatactgagcatgttttcatatgcttgttggacatgcgtatgtcttcttttgtgaagtgttggttcatgt-ctttgctcatttttaaatggggttgtttttgcttgttgatttgtttaaatttcttatagattctggatattagacctttgttggatgcttaatttgcaaatattttctcctattttgtaggttgtctgtttaatctgttggtagtttcttttgctgtgcagaagattttAAATATTTATTCTG
s panTro5.chr6              29278197 809 + 175400573 tctttgtgtctgtgtgtactcaatgtttagctcatacttataagtgagaacatgtggtatttggttttctgtttttgcattaattcacttaggataatggcctccagctgccatccatgctgttgcaagggacatgatttcattctttttatggttgcatagtattctgtggtgtatatatgttacattttctttatccagtccaccactgatgggcatctagattgattctatgtctttgctactgtgaatagtgctgtgatgaacatgcgagtgaatgtgtctttttggtagaacaatttttatttctttgggtatatacccagtaatgggattgttaggtcaaatggtagttctgagttctttgagaaatctctaaactgttttccacagtggctaaactaattgaaattcccaccagccgtgtgtgagtattccattttctctgcaacctcactaacatctgttattttttgaatttttaataatgtccattctgactggtgtgagatggtatttcattgtggttttgatttgcatttccctaacgattagtgatactgagcatgttttcatatgcttgttggacatgcgtatgtcttcttttgtgaagtgttggttcatgt-ctttgctcatttttaaatggggttgtttttgcttgttgatttgtttaaatttcttatagattctggatattagacctttgttggatgcttaatttgcaaatattttctcctattttgtaggttgtctgtttaatctattggtagtttcttttgctgtgcagaagattttAAATATTTATTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29524392 809 + 173848474 tctttgtgtctgtgtgtactcaatgtttagctcatacttataagtgagaacatgtggtatttggttttctgtttttgcattaattcacttaggataatggcctccagctgccatccatgctgttgcaagggacatgatttcattctttttatggttgcatagtattctgtggtgtatatatgttacattttctttatccagtccaccactgatgggcatctagattgattctatgtctttgctactgtgaatagtgctgtgatgaacatgcgagtgaatgtgtctttttggtagaacaatttttatttctttgggtatatacccagtaatgggattgttaggtcaaatggtagttctgagttctttgagaaatctctaaactgttttccacagtggctaaactaattgaaattcccaccagccgtgtgtgagtattccattttctctgcaacctcactaacatctgttattttttgaatttttaataatgtccattctgactggtgtgagatggtgtttcattgtggttttgatttgcatttccctaacgattagtgatactgagcatgttttcatatgcttgttggacatgcgtatgtcttcttttgtgaagtgtaggttcatgt-ctttgctcatttttaaatggggttgtttttgcttgttgatttgtttaaatttcttatagattctggatattagacctttgttggatgcttaatttgcaaatattttctcctattttgtaggttgtctgtttaatctgttggtagtttcttttgctgtgcagaagattttAAATATTTATTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5321403 809 +   6154872 tctttgtgtctgtgtatactcaatgtttagctcatacttataagtgagaacatgtggtatttggttttctgtttttgcattaattcacttaggataatggcctccagctgccatccatgctgttgcaagggacatgatttcattctttttatggttgcatagtattctgtggtgtatatatgtcacattttctttatccaatccaccactgatgggcatctagattgattctatgtctttgctactgtgaatagtgctgtgatgaacatgcgagtgaatgtgtctttttggtagaacaatttttatttctttgggtatatacccagtaatgggattgttaggtcaaatggtagttctgagttctttgagaaatctctaaactgttttccacagtggctaaactaattgaaattcccaccagctgtgtgtaagtattccattttctctgcaacctcactaacatctgttattttttgactttttaataatgtccattctgactggtgtgagatggtatttcactgtggttttgatttgcatttccctaacgattagtgatactgagcatgttttcatatgcttgttggacatgtgtatgtcttcttttgtgaagtgttggttcatgt-ctttgctcatttttaaatggggttgcttttgcttgttgatttgtttaaatttcttatagattctggatattagacctttgttggatgcttaatttgcaaatattttctcctattttgtaggttgtctgtttaatctgttggtagtttcttttgctgtgcagaagattttAAATATTTATTTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74334290 810 + 122973662 tctttgtgtccatgtgtactgaatgtttagctcatacttataagcgagaacatgtggtatttggttttctgtttttgcattaattcacttaggataatggcctccacctgccatccatgctgttgcaagggacatgatttcattctttttatggttgcatagtattccgtggtgtatatatgccacattttctttatccagtccacaagtaatgggcatctagattgattctatgtctttgctactgtgaatagtgctgtgatgaatatgcgagtgcatgtgtctttttggcagaacaatttttatttctttgggtatatacccagtaatgggattgttaggtcaaatggtagttgtgagttctttgagaaatgtctaaactgttttccacagtggctaatctaatttaaatttccaccagccgtgtataagtattcgattttctctgcaacctcactaacatctgttattttttgactttttaataatgtccattctgactggtgtgagatggtatttcattgtggttttgatttgcatttccataacgattagtgatattgagcatgtttttatatgcttgttggacatgcgtatgtcttcttttgtgaagtgttggttcatgtcctttgctcatttttaaatggggttatttttgcttgttgatttgtttaaatttcttatagattctggatattagacctttgttggatgcttaatttgcaaatattttctcctattttgtaggttatctgtttaatctgttggtagtttcttttgctgtgcagaagATTTGAAATATTTATTTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29490936 806 + 172585720 -ctttgtgtccatgtgtactcagtgtttagctcatacttataagtgagaacatgtgacatttggttttctcttttt-cattaattcacttaagataatggtctctagctgccatccatgcagttgcagaggacatgattttattctttttatggttgcatagtattccgttgtgtatatatgccacattttctttatccagtccaccactcatgggtatctaggttgattctatgtctttgctattgtgaatagtgctgtgatgaacatgcgagtgcatgtgtctttttggtagaacaatttttatttctttgggtatatacccagtaatgggattgttacgtcaaatggtagttctgagttctttgagaaatctctaaactgttttccgcagtggctaaactaatttaaattcccaccagcagtatataagtattccattttctctgcaacctcgctaacatctgtcattttttgacttgtaat-aatgtccattctgactggtgtgagatggtatctcattgtggttttgatttgcatttccctaactattagtgatattgagcatgttttcatatgctttttggccatgtgtatgtcttcttttgagaagtgtcggttcatgtcctttgctcatttttaaatggggttgtttttgcttgttga-ttgtttaaatttcttatagattctggatatcagacctttgttgtatgcttaatttgcaaatattttttcctattttgtaggttgtctgtttaatctgttggtagttccttttgctgtgcagaagattttAAATATTTATTTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29152054 806 - 170955103 -ctttgtgtccatgtgtactcagtgtttagctcatacttataagtgagaacatgtgacatttggttttctcttttt-cattaattcacttaagataatggtctctagctgccatccatgcagttgcagaggacatgattttattctttttatggttgcatagtattccgttgtgtatatatgccacattttctttatccagtccaccactcatgggtatctaggttgattctatgtctttgctattgtgaatagtgctgtgatgaacatgcgagtgcatgtgtctttttggtagaacaatttttatttctttgggtatatacccagtaatgggattgttacgtcaaatggtagttctgagttctttgagaaatctctaaactgttttccgcagtggctaaactaatttaaattcccaccagcagtatataagtattccattttctctgcaacctcgctaacatctgtcattttttgacttgtaat-aatgtccattctgactggtgtgagatggtatctcattgtggttttgatttgcatttccctaactattagtgatattgagcatgttttcatatgctttttggccatgtgtatgtcttcttttgagaagtgtcggttcatgtcctttgctcatttttaaatggggttgtttttgcttgttga-ttgtttaaatttcttatagattctggatatcagacctttgttgtatgcttaatttgcaaatattttttcctattttgtaggttgtctgtttaatctgttggtagttccttttgctgtgcagaagattttAAATATTTATTTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2144380 802 -   2996164 -ctttgtgtccatgtgtactcagtgtttagctcatacttataagtgagaacatgtgacatttggttttctcttttt-cattaattcacttaagataatggtctctagctgccatccatgcagttgcagaggacatgattttattctttttatggttgcatagtattccgttgtgtatatatgccacattttctttatccagtccaccactcatgggtatctaggttgattctatgtctttgctattgtgaatagtgctgtgatgaacatgcgagtgcatgtgtctttttggtagaacaatttttatttctttgggcatatacccagtaatgggattgttacgtcaaatggtagttctgagttctttgagaaatctctaaactgttttccgcagtggctaaactaatttaaattcccaccagcagtatataagtattccattttctctgcaaccttgctaacatctgtcattttttgacttgtaat-aatgtccattctgactggtgtgagatggtatctcattgtggttttgatttgcatttccctaactattagtgatattgagcatgttttcatatgctttttggccatgtgtatgtcttcttttgagaagtgtcggttcatgtcctttgctcatttttaaatggggttgtttttgcttgttga-ttgtttaaatttcttatagattctggatatcagacctttgttgtatgcttaatttgcaaatattttttcctattttgtagat----tgtttaatctgttggtagttccttttgctgtgcagaagattttAAATATTTATTTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2025176 796 -   2157725 tctttgtgtccatgtgtactcagtgtttagctcatacttataagtgagaacatgtgacatttggttttctcttttt-cattaattcacttaagataatggtctccagctgccatccatgcacttgcaaaggacatgattttattctttttatggttgcgtagtattctgttgtgtatatatgccacattttctttatctagtccgccactgatgggtatctaggttgattctatgtctttgctattgtgaatagtgctgtgatgaacatgcgagtgcatgtgtctttttggtaaaacaatttttatttctttgggtatatacccagtaatgggattgttatgtaaaatggtagttctgagttctttgagaaatctctaaactgttttccgcagtggctgaactaatttaaattcccaccagcagtatataagtattccattttctctgcaacctcg-------ctgtcatttttgactttttaat-aatgtccattctgactggtgtgag-----atttcattgtggttttgatttgcatttccctaactattagtgatattgagcatgttttcatatgctttttggccatgtgtatgtcttcttttgagaagtgttggttcatgtcctttgctcatttttaaatggggttgtttttgcttgttgatttgtttaaatttcttatagtttctggatattagacctttgttgtatgcttaatttgcaaatatttttttctgttttgtaggttgtctgtttaatctgttggtagtttcttttggtgtgcagaagattttAAATGTTTATTTTG
i cerAty1.NW_012001495v1   I 4596 C 0
s chlSab2.chr17             28455265 796 -  71996105 tctttgtgtccatgtgtactcagtgtttagctcatacttataagtgagaacatgtgacatttggttttctcttttt-cattaattcacttaagataatggtctccagctgccatccatgcagttgcaaaggacatgattttattctttttatggttgcgtagtattctgttgtgtataattgccacattttctttatgtagtccgccactgatggatatctaggttgattctatgtctttgctattgtgaatagtgctgtgatgaacatgcgagtgcatgtgtctttttggtagaacaatttttatttctttgggtatatacccagtaatgggattgttatgtaaaatggtagttctgagttctttgagaaatctctaaactgttttctgcagtggctaaactaatttaaattcccaccagcagtatataagtattccattttctctgcaaactcg-------ctgtcattttttgactttttaa-aatgtccattctgactggtgtgag-----atttcattgtggttttgatttgcatttccctaactattagtgatattgagcatgttttcatatgctttttggccatgtgtatgtcttcttttgagaagtgtcggttcatgtcctttgctcatttttaaatggggttgtttttgcttgttgatttgtttaaatttcttatagtttctggatattagacctttgttgtatgcttaatttgcaaatattttttcctatattttaggttgtctgtttaatctgttggtagtttcttttgctgtgcagaagattttAAATGTTTATTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2163047 797 +   2316924 tctttgtgtccatgtgtactcagtgtttagctcatacttataagtgagaacatgtgacatttggttttctcttttt-cattaattcacttaagataatggtctccagctgccatccatgcacttgcaaaggacatgattttattctttttatggttgcgtagtattctgttgtgtatatatgccacattttctttatctagtccgccactgatgggtatctaggttgattctatgtctttgctattgtgaatagtgctgtgatgaacatgcgagtgcatgtgtctttttggtaaaacaatttttatttctttgggtatatacccagtaatgggattgttatgtaaaatggtagttctgagttccttgagaaatctctaaactgttttccgcagtggctgaactaatttaaattcccaccagcagtatataagtattccattttctctgcaacctcg-------ctgtcattttttgactttttaataatgtccattctgactggtgtgag-----atttcattgtggttttgatttgcatttccctaactattagtgatattgagcatgttttcatatgctttttggccatgtgtatgtcttcttttgagaagtgtcggttcatgtcctttgctcatttttaaatggggttgtttttgcttgttgatttgtttaaatttcttatagtttctggatattagacctttgttgtatgcttaatttgcaaatattttctcctattttgtaggttgtctgtgtaatctgttggtagtttcttttgccgtgcagaagattttAAATGTTTATTTTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2027382 805 -   3067355 ---gtgtgtccatgtgtactcagtgtttagctcatacttataagtgagaacatgtgacatttggttttctcttttt-cattagttcacttaagataatggtctccagctgccatccatgcagttgcaaaggacatgattttattctttttatggttgcatagtattccgttgtgtatatatgccacattttctttatccagtccaccactaatgggtatctaggttgattctatgtctttgctattgtgaataatgctgtgatgaacatgcgagcgcatgtgtctttttggtagaacaatttttatttctttgggtatatacccagtaatgggattgttatgtcaaatggtagttctgagttatttgagaaatctctaaactgtttaccgcagtggctaaactaatttaaattcccaccagcagtatataagtattccattttctctgcaaccttgctaacatctgtcattttttgactttttaataatatccattctgactggtgtgagatggtatttcattgtggtttcgatctgcatttctgtaactattagtgatattgagcatgttttcatatgctttttggccatgtgaatgtcttcttttgagaagtgtcagttc-tgtcctttgctcatttttaaatggggttgtttttgcttgttgattcgtttaaatttctaatagattctggatattagacctttgttgtgtgcttaatttgcaaatattttttcctattttgcaggttgtctgtttaatctgttggtagtttcttttgctgtgcagaagattttaaatATTTATTTTG
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            181411   0 -    302817 C
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171542527 4815 - 171630274 I

a score=2754362.000000
s hg38.chr6_GL000254v2_alt    303969 467 +   4827813 TATATTTCTTTTTCACGGAGTCTATAGGGATTTCTAATAACATAA------TTTTTTTGTGTTAAAAATGGAGTGGATTCTGTTATCTTAAAATAATGATAGTTTTCTTTCTTCTTA-T----------TTTTTGGGGGATA----TACCTGTATTTTTCAGCTAATGTAA-AACAACAGAGTAGAAACTCTAGTTGATATTTGCTCTTAAGCATTTTAGTTCAG-----------------AGGGACTAAAAGCAAGGTGCAACAAATTAAGAAGTAA-TGAATAGTGTCT-AATGAGAAAAATAGAG------TGtgttttgaactagcctaacccaatttggtcatgctcagcaacagggtcatttttggtagttaatcatagtggctgaaaaaggtgaagtgggcgtatggtt-agcatttaccaccacaatcctatgtcccagttatgatgaaaatgactctgatcaaattctgccatgaatatagagattagttaaccagacattagca
s panTro5.chr6              29279006 466 + 175400573 TATATTTCTTTTTCACGGAGTCTATTGGGATTTCTAATAACATA-------TTTTTTTGTGTTAAAAATGGAGTGGATTCTGTTATCTTAAAATAATGATAGTTTTCTTTCTTCTTA-T----------TTTTTGGGGGATA----TACCTGTATTTTTCAGCTAATGTAA-AACAACAGAGTAGAAACTCTAGTTGATATTTGCTCTTAAGCATTTTAGTTCAG-----------------AGGGACTAAAAGCAAGGTGCAACAAATTAAGAAGTAA-TGAATAGTGTCT-AATGAGAAAAATAGAG------TGtgttttgaactagcctaacccaatttggtcatgctcagcaacagggtcatttttggtagttaatcatagtggctgaaaaaggtgaagtgggcgcatggtt-agcatttaccaccacaatcctatgtcccagttatgatgaaaatgactctgatcaaattctgccatgaatatagagattagttaaccagacattagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29525201 464 + 173848474 TATATTTCTTTTTCACGGAGTCTATAGGGATTTCTAATAACA---------TTTTTTTGTGTTAAAAATGGAGTGGATTCTGTTATCTTAAAATAATGATAGTTTTCTTTCTTCTTA-T----------TTTTTGGGGGATA----TACCTGTATTTTTCAGCTAATGTAA-AACAACAGAGTAGAAACTCTAGTTGATATTTGCTCTTAAGCATTTTAGTTCAG-----------------AGGGACTAAAAGCAAGGTGCAACAAATTAAGAAGTAA-TGAATAGTGTCT-GATGAGAAAAATAGAG------TGtgttttgaactagcctaacccaatttggtcatgctcagcaacagggtcatttttggtagttaatcatagtggctgaaaaaggtgaagtgggcgtatggtt-agcatttaccaccacaatcctatgtcccagttatgatgaaaatgactctgatcaaattctgccatgaatatagagattagttaaccagacattagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5322212 467 +   6154872 TATATTTCTTTTTCACAGAGTCTATAGGGATTTCTAATAGCATAA------TTTTTTTGTGTTAAAAATGGAGTGGATTCTGTTATCTTAAAATAGTGATAGTTTTCTTTCTTCTTA-T----------TTTTTGGGGGATA----TACCTGTATTTTTCAGCTAATGTAA-AACAACAGAGTAGAAACTCTAGTTGATATTTGCTCTTAAGCATTTTAGTTCAG-----------------AGGGACTAAAAGCAAGGTGCAAGAAATTAAGAAGTAA-TGAATAGTGTCT-AATGAGAAAAATCGAG------TGtgttttgaactagcctaacccaatttggtcatgctcagcaacagggtcatttttggtagttaatcatagtggctgaaaaaggtgaagtgggcatatggtt-agcatttaccaccacaatcctatgtcccagttatgatgaaaatgactctgatcaaattctgccatgaatatagagattagttagccagacattagca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74335100 459 + 122973662 TATA----TTTTTCACTGAATCTATAGGGATTTCTAATAACATG-------ATTTTTTGTATTAAAAATGGAGTGGATTCTGTTATCTTAAAATAATGATAGTTTTCT---TTCTTA-T----------TTTTGGGGGGATA----TACCTGTATCTTTCAGCTCATGTGA-AACAACAGAGTAGAAACTCTAGTTTATATTTGTTCTTAAAAATTTTAGTTCAG-----------------AGGGACTAAAAGCAAGGTGCAACAAATTAAGAAGTAA-CGAATAGTGTCT-AATAAAAAAAATAGAG------TGtgttttgaactagcctaacccaattaggtcatgctcaacaacaggatcatttttggtagttaatcatagtggctgaaaaaggcgaggtgggcatatggtt-agcatttaccaccacaatcctgtgtcccagttatgatgaaaatgactctgatcaaattcttccatgaatatagaaattcgttaaccagacattagca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29491742 472 + 172585720 TATATTTCTTTTTCACTGAATCTATAGGGATTTCTAACAACTTCCTTATTTATTTTTTGTATTAAAAATGGAGTGGATTCTGTTATCTCAAAATAATGATAGTTTTCTTTCTTCTCATT----------TTTTTGGGGGATA----TACCTGTATCTTTCAGCTAATGTAA-AACAAC--AGTGGAAACTCTCGTTGATATTGGCTCTTAAACATTTTAGTTCAA-----------------AGGGACTAAAAGCAAGGTGCAACAAATTAAGAAGTAA-TGAATAGTGTGT-AATGAGAGAAATAGAG------TGtgttttgaactagcctaacccaatttggtcatgttcaacaccagcgtcatttttggtagttaatcatagtgcctaaaaaaggcgaggtgggcatatggct-agcatttaccaccataatcttatgtcccagttatgatgaaagtgactctgatcaaattctgccatgcagatagagattcattaaccagacattagca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29152860 472 - 170955103 TATATTTCTTTTTCACTGAATCTATAGGGATTTCTAACAACTTCCTTATTTATTTTTTGTATTAAAAATGGAGTGGATTCTGTTATCTCAAAATAATGATAGTTTTCTTTCTTCTCATT----------TTTTTGGGGGATA----TACCTGTATCTTTCAGCTAATGTAA-AACAAC--AGTGGAAACTCTCGTTGATATTGGCTCTTAAACATTTTAGTTCAA-----------------AGGGACTAAAAGCAAGGTGCAACAAATTAAGAAGTAA-TGAATAGTGTGT-AATGAGAGAAATAGAG------TGtgttttgaactagcctaacccaatttggtcatgttcaacaccagggtcatttttggtagttaatcatagtgcctaaaaaaggcgaggtgggcatatggct-agcatttaccaccataatcttatgtcccagttatgatgaaagtgactctgatcaaattctgccatgcagatagagattcattaaccagacattagca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2145182 472 -   2996164 TATATTTCTTTTTCACTGAATCTATAGGGATTTCTAACAACTTCCTTATTTATTTTTTGTATTAAAAATGGAGTGGATTCTGTTATCTCAAAATAATGATAGTTTTCTTTCTTCTCATT----------TTTTTGGGGGATA----TACCTGTATCTTTCAGCTAATGTAA-AACAAC--AGTGGAAACTCTCGTTGATATTGGCTCTTGAACATTTTAGTTCAG-----------------AGGGACTAAAAGCAAGGTGCAACAAATTAAGAAGTAA-TGAATAGTGTGT-AATGAGAGAAATAGAG------TGtgttttgaactagcctaacccaatttggtcatgttcaacaccagggtcatttttggtagttaatcatagtgcctaaaaaaggcgaggtgggcatatggct-agcatttaccaccataatcttatgtcccagttatgatgaaagtgactctgatcaaattctgccatgcagatagagattcattaaccagacattagca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2025972 472 -   2157725 TATATTTCTTTTTCACTGAATCTATAGGGATTTCTAACAACTTCCTTATTTATTTTTTGTATTAAAAATGGAGTGGATTCTGTTATCTTAAAATAATGATAGTTTTCTTTCTTCTTATT----------TTTTTGGGGGATA----TACTTGTATCTTTCAGCTAATGTAA-AACAAC--AGTGGAAACTCTTGTTGATATTTGCTCTTAAACATTTTAGTTCAG-----------------AGGGACTAAAAGCAAGGTGCAACAAATTAAGAAGTAA-TGAATAGTGTGT-AATGAGAGAAATAGAG------TGtgttttgaactagcctaacccaatttggtcatgttcaacaccagggtcatttttggtagttaatcatggtgcctaaaaaaggcgaggtgggcatatggtt-agcatttaccaccataatcttatgtcccagttatgatgaaagtgactctgatcaaattctgccatgcatatagagattcgttaaccagacattagca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28456061 472 -  71996105 TATATTTCTTTTTCACTGAATCTATAGGGATTTCTAACAACTTCCTTATTTATTTTTTGTATTAAAAATGGAGTGGATTCTGTTATCTTAAAATAATGATAGTTTTCTTTCTTCTTATT----------TTTTTGGGGGATA----TACCTGTATCTTTCAGCTAATGTAA-AACAAC--AGTGGAAACTCTCGTTGATATTTGCTCTTAAACATTTTAGTTCAG-----------------AGGGACTAAAAGCAAGGTGCAACAAATTAAGAAGTAA-TGAATAGTGTGT-AATGAGAGAAATAGAG------TGtgttttgaactagcctaacccaatttggtcatgttcaacaccagggtcatttttggtagttaatcatggtgcctaaaaaaggcgaggtgggcatatggtt-agcatttaccaccataatcttatgtcccagttatgatgaaagtgactctgatcaaattctgccatgcatatagagattcgttaaccagacattagca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2163844 472 +   2316924 TATATTTCTTTTTCACTGAATCTATAGGGATTTCTAACAACTTCCTTATTTATTTTTTGTATTAAAAATGGAGTGGATTCTGTTATCTTAAAATAATGATAGTTTTCTTTCTTCTTATT----------TTTTTGGGGGATA----TACTTGTATCTTTCAGCTAATGTAA-AACAAC--AGTGGAAACTCTTGTTGATATTTGCTCTTAAACATTTTAGTTCAG-----------------AGGGACTAAAAGCAAGGTGCAACAAATTAAGAAGTAA-TGAATAGTGTGT-AATGAGAGAAATAGAG------TGtgttttgaactagcctaacccaatttggtcatgttcaacaccagggtcatttttggtagttaatcatggtgcctaaaaaaggcgaggtgggcatatggtt-agcatttaccaccataatcttatgtcccagttatgatgaaagtgactctgatcaaattctgccatgcatatagagattcgttaaccagacattagca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2028187 472 -   3067355 TATATTTCTTTTCCACTGAATCCATAGGGATTTCTAACAACTTCCTTATTTATTTTTTGTATTAAAAATGGAGTGGATTCTGTTATCTTAAAATAATGATAGTTTTCTTTCTTCTTATT----------TTTTTGGGGGATA----TACCTGTATCTTTCAGCTAACGTAA-AACAAC--AGTGGAAACTCTCGTTGATATTTGCTCTTAAACATTTTAGTTCAG-----------------AGGGACTAAAAGCAAGATGCAACAAATTAAGAAGTAA-TGAATAGTGTGT-AATGAGAGAAATAGAG------TGtgttttgaactagcctaacccaatttggtcatgttcaacaccagggtcatttttggtagttaatcatagtgcctaaaaaaggcgaggtaggcatatgatt-agcatttaccaccataatcttatgtcccagttgtgatgaaagtgactctgatcaaattctgccatgcatatagagattcattaaccagacattagca
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH561790            181411 485 -    302817 TATGTTTCCTTCTTACTGAATCTATAGGGATTTCTAATAGATTTCATA---ATATTTT---------------TGGTTTATGTTTCTTTA--------ATGATTTACTTTCTTCTCATTTCTTACCTTATTTTTGAGGGGCAGAGGTGTATATATCTTCCAGCTAATGTTACAACAACAGCATAGAAAGTTTTGTTGAACTTTTGTGCTACATACTTTAGTTGAGATCCTCATATTTACAGAAGGGA--GAAAGCAGGACATAATGAATTAAGAAGAGATTAAATAGCATGTGAATGGGAGAAGCAGAATATACCTGTGATTTgagctgacctaaacgaatttggtcatgcccaactctaagattattttttgttgataagaatggtccttgaaaatcttggggtaggtagatggttaagcattt-ccccca-aatctgatcatcagtttataatgaaagtgactctgaagaaatgctgccacacacaaagaaacttattaagcaggccctagca
i dasNov3.JH561790         C 0 I 17
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171542527 4815 - 171630274 I

a score=2844455.000000
s hg38.chr6_GL000254v2_alt    304436 498 +   4827813 taagacagtttatgtcatctgctctgtaaatttaataaatcctcagctctctgccctttaaaatactccaa-agtaccttgta-gaaaggtgtatttgaagaagataagacaacagaggtagggttttactttcatgtcagcattgagaaagtggaacttatccatagtaggacacaggcccatttagggaacaagtcttgggcactacccctaaagtttaggctacacatcttgctaggttcttatgcccttcatagaagaatagggaatgtttctaaaatatgttagatgaccctcatatatttggtaccactaatttcaggatgataactgatttaaacctcaattattatgtgagttggctaggcatcagatgttgaccaagaggtagataactgaaggtcctgtggtagctgccttggagggcagcctttctggctaaatgctagttgacctccccatctaatagtgtacatttactgattagagCCACTCATGT
s panTro5.chr6              29279472 498 + 175400573 taagacagtttatgtcatctgctctgtaaatttaataaatcctcagctctctgccctttaaaatactccaa-agtaccttgta-gaaaggtgtatttgaagaagataagacaacagaggtagggttttactttcatgtcagcattgagaaagtggaacttatccatggtaggacacaggcccatttagggaacaagtcttgggcactacccctaaagtttaggctacacatcttgctaggttcttatgcccttcatagaagaatagggaatgtttctaaaatatgttagatgaccctcatatatttggtaccactaatttcaggatgataactgatttaaacctcaattattatgtgagttggctaggcatcagatgttgaccaagaggtagataactgaaggtcctgtggtagctgccttggagggcagcctttctggctaaatgctagttgacctccccatctaatagtgtacatttactgattagagccactcatgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29525665 498 + 173848474 taagacagtttatgtcatctgctctgtaaatttaataaatcctcagctctctgccctttaaaatactccaa-agtaccttgta-gaaaggtgtatttgaagaagataagacaacagaggtagggttttactttcatgtcagcattgagaaagtggaacttatccatggtaggacacaggcccatttagggaacaagtcttgggcactacccctaaagtttaggctacacatcttgctaggttcttatgcccttcatagaagaatagggaatgtttctaaaatatgttagatgaccctcatatatttggtaccactaatttcaggatgataactgatttaaacctcaattattatgtgagttggctaggcatcagatgttgaccaagaggtagataactgaaggtcctgtggtagctgccttggagggcagcctttctggctaaatgctagttgacctccccatctaatagtgtacatttactgattagagCCACTCATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5322679 498 +   6154872 taagacagtttatgtcatgtgctctgtaaatttaataaatcctcagctctctgccctttaaaatactccaa-agtaccttgta-gaaaggtgtatttgaagaagataagacaacagaggtagggttttactttcatgtcagcattgagaaagtggaacttatccatggtaggacacaggcccatttagggaacaagtcttgggcactacccctaaagtttaggctacacatcttgctaggttcttatgcccttcatagaagaatagggaatgtttctaaaatatgttagatgaccctcatatatttggtaccactaatttcaggatgataactgatttaaacctcaattattatgtgagttggctaggcatcagatgttgaccaagaggtagataactgaacggcctgtggtagctgccttggagggcagcctttctggctaaatgctagttgacctccccatctaatagtgtacatttactgataagagccactcatgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74335559 498 + 122973662 taacatggtttatgtcatctgctctgtaaatttaataaatcctcagctctctgccctttaagatactccaa-agtaccttgta-gaaaggtgtatttgaagaagataagacaacagaggtagggttttactttcatgtcaacatcgagaaaatggaacttatccatggctggacacaggcccatttagggaacaagtcttggacactacccctaaagtttaggctacacatcttgctaggttcttatgcccttcatagaagaatagggaatgtttctaaaatatgttagatgaccgttatatatttggtaccactaatttcaggatgataactgatttaaacctcaattactatgtgagttggctaggcatcagatgttgacaaagagatggataactgaagggcttgtggtagctgccttggaggtcagcctttctggctaaatgctagttgacctccccatctagtagtgtacatttactgattagagccactcatgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29492214 500 + 172585720 taagacagtttatgtcatctgctctgtaaatttaataaatccacaactctctgtcctttaagatactccaatactatcttgtataaaaggtgtatttcaagaagataagataacagtggtagggttttactttcatgtcaacgtagagaaagtggaacttatccatggctggacacaggcccatttagggaacaagtcttgggcactacccctaaagtttaggctacacatctggctaggttcttatgcccttcatataagaatagagaatgtttctaaaatatgttagataaccctcatatatttggtgccattaatttcaggatgataatggatttaaacctcaattattatgggagttggctaggtatcagatgttgaccaaaaggtggataactgaagggcttgtggtagctgccttggagggcagcctttctgactaaatgctagttgacttccccatctaatagtgtacatttactgattagagccactcatgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29153332 500 - 170955103 taagacagtttatgtcatctgctctgtaaatttaataaatccacaactctctgtcctttaagatactccaatactatcttgtataaaaggtgtatttgaagaagataagataacagtggtagggttttactttcatgtcaacgtagagaaagtggaacttatccatggctggacacaggcccatttagggaacaagtcttgggcactacccctaaagtttaggctacacatctggctaggttcttatgcccttcatataagaatagagaatgtttctaaaatatgttagataaccctcatatatttggtgccattaatttcaggatgataatggatttaaacctcaattattatgggagttggctaggtatcagatgttgaccaaaaggtggataactgaagggcttgtggtagctgccttggagggcagcctttctgactaaatgctagttgacttccccatctaatagtgtacatttactgattagagccactcatgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2145654 500 -   2996164 taagacagtttatgtcatctgctctgtaaatttaataaatccacaactctctgtcctttaagatactccaatactatcttgtataaaaggtgtatttgaagaagataagataacagtggtagggttttactttcatgtcaacgtagagaaagtggaacttatccatggctggacacaggcccatttagggaacaagtcttgggcactacccctaaagtttaggctacacatctggctaggctcttatgcccttcatataagaatagagaatgtttctaaaatatgttagataaccctcatatatttggtgccattaatttcaggatgataatggatttaaacctcaattattatgggagttggctaggtatcagatgttgaccaaaaggtggataactgaagggcttgtggtagctgccttggagggcagcctttctgactaaatgctagttgacttccccatctaatagtgtacatttactgattagagccactcatgt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2026444 500 -   2157725 taagacagtttatgtcatctgctttgtaaatttaataaatccacaactctctgtcctttaagatactccaatactatcttgtataaaaggtgtatttgaagaagataagataacagtggtagggttttactttcatgtcaacatcgagaaagtggaacttatccatggttggacacaggcccatttagggaacaagtcttgggcactacccctaaagtttaggctacatatctggctaggttcttatgcccttcatataagaatagaaaatgtttctaaaatatgttagataacccttatatatttggtgccattaatttcaggatgataacggatttaaacctcaattattatgtgagttggctaggtatcagatgttgaccaaaaggtggataactgaagggtttgtggtagctgccttggagggcagcctttctgattaaatgctagttgacttccccatctaatagtgtacatttactgattagagccactcatgt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28456533 500 -  71996105 taagacagtttatgtcatctgctctgtaaatttaataaatccacaactctctgtcctttaatatactccaatactatcttgtataaaaggtgtatttgaagaagataagataacagtggtagggttttactttcatgtcagcatcgagaaagtggaacttatccatggctggacacgggcccatttagggaacaagtcttgggcactacccctaaagtttaggctacatatctggctaggttcttatgcccttcatataagaatagaaaatgtttctaaaatatgttagataacccttatatatttggtgccattagtttcaggatgataacggatttaaacctcaattattatgtgagttggctaggtatcagatgttgaccaaaaggtggataactgaagggtttgtggtagctgccttggagggcagcctttctgattaaatgctagttgacttccccatctaatagtgtacgtttactgattagagtcactcatgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2164316 500 +   2316924 taagacagcttatgtcatctgctctgtaaatttaataaatccacaactctctgtcctttaagatactccaatactatcttgtataaaaggtgtatttgaagaagataagataacagtggtagggttttactttcatgtcaacatcgagaaagtggaacttatccatggctggacacaggcccatttagggaacaagtcttgggcactacccctaaagtttaggctacatatctggctaggttcttatgcccttcatataagaatagagaatgtttctaaaatatgttagataacccttatatatttggtgccattaatttcaggatgataacggatttaaacctcaattattatgtgagttggctaggtatcagatgttgaccaaaaggtggataactgaagggtttgtggtagctgccttggagggcagcctttctgattaaatgctagttgacttccccatctaatagtgtacatttactgattagagccactcatgt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2028659 496 -   3067355 taagacagtttatgtcatctgctctgtaaatttaataaatccacaactc----tcctttaagatactccaatactatcttgtataaaaggtgtatttgaagaagataagataacagtagtagggttttactttcatgtcaacatcgagaaagtggaacttatccatggctggacacaggcccatttagggaacaggtcttgggtactacccctaaagtttaggctacacatgtggctaggttcttatgccctccgtataagaatagagaatgtttctaaaatatgttagataaccctcatatatttggtgccattaatttcaggatgataacggatttaaacctcaattattatgtgagttggctaggtatcagatgttgaccaaaaggtggataactgaagggcttgtggtagctgccttggagggcagcctttctgactaaatgctagttgacttccccatctaatagtgtacatttactgattagagccactcatgt
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            181896  17 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171542527 4815 - 171630274 I

a score=-2827.000000
s hg38.chr6_GL000254v2_alt    304934 2 +   4827813 CC-
s panTro5.chr6              29279970 2 + 175400573 cc-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29526163 2 + 173848474 CC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5323177 2 +   6154872 cc-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74336057 2 + 122973662 cc-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29492714 2 + 172585720 -ca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29153832 2 - 170955103 -ca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2146154 2 -   2996164 -ca
i macNem1.NW_012011356v1   C 0 C 0
e dasNov3.JH561790            181896 17 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171542527 4815 - 171630274 I
e colAng1.NW_012115566v1     2029155 0 -   3067355 C
e manLeu1.NW_012104165v1     2164816 0 +   2316924 C
e chlSab2.chr17             28457033 0 -  71996105 C
e cerAty1.NW_012001495v1     2026944 0 -   2157725 C

a score=275341.000000
s hg38.chr6_GL000254v2_alt    304936 324 +   4827813 ATAAAATGTTATATATATATATAttt-------ttttttttttttttgagacggagtcttgctgtctcccaggctggagtgcagtgtcatgatcttggctcactgggctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccgcgaccacgcccagctaattttttgtatttttagtagagacggggtttcatcatgttagctgtgatggtctcgatctcctgacctcgtgatccaccgcctcggcctcccaaagagctgggattacaggcgtgagcctctgtgcctg
s panTro5.chr6              29279972 330 + 175400573 ataaaatgTtatatatatatatatatatata-tttttttttttttttgagacggagtctcgctgtctcccaggctggagtgcagtggcatgatcttggctcactgggctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccgcgaccacgcccagctaattttttgtatttttagtagagatggggtttcatcatgttagctgtgatggtcttaatctcctgacctcatgatccaccgcctcggcctcccaaagagctgggattacaggcgtgagcctccgtgcccg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29526165 327 + 173848474 ATAAAATGTtatatatatatatatagata----tatatatattttttgagacggagtctcgctgtctcccaggctggagtgcagtggcatgatcttggctcactgggctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccgcgaccacgcccagctaattttttgtatttttagtagagacggggtttcatcatgttagctgtgatggtctcaatctcctgacctcatgatccaccgcctcggcctcccaaagagctgggattacaggcgtgagcctccgtgcccg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5323179 331 +   6154872 ataaaatgTtatatatatatatatatatatattttttttttttttttgagacggagtctcgctgtctcccaggctggagtgcagtggcatgatcttggctcactgggctcactgcaagtcctgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccgccaccacgcccagctaattttttgtatttttagtagagacggggtttaatcatgttagctgggatggtctcgatctcctgacctcgtgatccactgcctcggcctcccaaagagctgggtttacaggcgtgagccaccgtgcccg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74336059 315 + 122973662 ataaaatgtaATATGTATATATATAt----------------tttttgagacggagtctcgctgtctcccaggctggagtgccgtggcatgatcttggctcactgggctcactgtaagctccgcctcccgggtttacgccattctcctgcctcagcctcccgagtaggtgggactacaggcgcccgccaccacgcccggctaattttttgtatttttagtagagacggggtttcatcatgttagccaggatggtctcgatctcctgacctcgtgatccaccgccttggcctcccaaagagctgggattacaggcgtgagccactgcgcctg
i nomLeu3.chr1a            C 0 C 0
e dasNov3.JH561790            181896  17 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171542527 4815 - 171630274 I
e colAng1.NW_012115566v1     2029155   0 -   3067355 C
e manLeu1.NW_012104165v1     2164816   0 +   2316924 C
e chlSab2.chr17             28457033   0 -  71996105 C
e cerAty1.NW_012001495v1     2026944   0 -   2157725 C
e macNem1.NW_012011356v1     2146156   0 -   2996164 C
e macFas5.chr4              29153834   0 - 170955103 C
e rheMac8.chr4              29492716   0 + 172585720 C

a score=2345.000000
s hg38.chr6_GL000254v2_alt    305260 2 +   4827813 gc
s panTro5.chr6              29280302 2 + 175400573 gc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29526492 2 + 173848474 gc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5323510 2 +   6154872 gc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74336374 2 + 122973662 gc
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171547342 2 - 171630274 gt
i calJac3.chr4             I 4815 C 0
e dasNov3.JH561790            181896 17 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e colAng1.NW_012115566v1     2029155 0 -   3067355 C
e manLeu1.NW_012104165v1     2164816 0 +   2316924 C
e chlSab2.chr17             28457033 0 -  71996105 C
e cerAty1.NW_012001495v1     2026944 0 -   2157725 C
e macNem1.NW_012011356v1     2146156 0 -   2996164 C
e macFas5.chr4              29153834 0 - 170955103 C
e rheMac8.chr4              29492716 0 + 172585720 C

a score=9000.000000
s hg38.chr6_GL000254v2_alt    305262 2 +   4827813 cC
s panTro5.chr6              29280304 2 + 175400573 cC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29526494 2 + 173848474 cC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5323512 2 +   6154872 cC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74336376 2 + 122973662 cC
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2026944 2 -   2157725 cc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28457033 2 -  71996105 cc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2164816 2 +   2316924 cc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2029155 2 -   3067355 cc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171547344 2 - 171630274 cc
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            181896 17 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e macNem1.NW_012011356v1     2146156 0 -   2996164 C
e macFas5.chr4              29153834 0 - 170955103 C
e rheMac8.chr4              29492716 0 + 172585720 C

a score=9685699.000000
s hg38.chr6_GL000254v2_alt    305264 1474 +   4827813 --ATAGAATGTAATATTTGAATGAATAAATGCACTTATATCAATAGCCTGACAAAGTGTTTTAAAGTATACTACAGTTACCATGACAAAGTGTTTCTCTGAAGAAACTTGTCTATGAAGAATAATGAGATTGGTAAGAAAACATAAATAAAAAGAACTACCAAGGAACATTTCCATCCAACTGATTTTAAAGAGAAT-AAATTGACCTGGAGTTAATTACCTAGTAGAATTAATTTCTACACAGTGATTTGGAATTTGGGAGTACAATTAGTGAAAACAGGTACTGGAATTGCTCCAGTGTTGGGAATGGACCCACATATTCATAAATGGGTACTTATTGGTACTAGAAAATTTTCTACACAATTACTCTACATTAAATATTACTCCAGGTTTTCAGGACATGGAAGTAGCTTCTTTTTAAAAAATCCTTTTCATGTTACTTCTCCACCTAGATAGTTTCAAAAAGTGTATTATTTTTCAATTTCAAAATTTTATTCATTGAAACATAAACTTGGTCAGTTCTATTCAAGACATCAATATAAAGAGAAATGACTGAATTGTA-GAAAGGTTTGTATAAATTAAATTGTAAAAGTGTGAGCTAAAAATATGCATTATTAATACAGAAAGCTTCTTAGTAATAATACCAAATATGTGCTCCTTATAATCACATGGATCAAAATTGTATACTCTTTAGTTAAGGGATGTAATGGGGAAAAATAGAAGATTGGAATTGTTTTAATTGCATCTGTGTTCTGAGGAATGG---------AGCAGCAGCAGC---AGAAGAAAAGGTGTTCTTTTACTTAAAACAACAAATTCTA----TTTTCTAATGCAAGGTGAGTGTATCTTTACCCCTTATTCTAGTGTTTATAGAAGA----TAGAGCCAGACAAATATTTCTCTCTAAGTGATAGTGACATTATTCCTTCACAGACACTACAGTTGAAAGAATTGGAGGTCCTA-GGTCAGAGACAAAGACAGATTGGAATAGAAGTTGGGACCgaaagtaaataagatcttccaaaacatggagcaagggggacctaaaa-aagcag--acatccagagagcaaagctctgtggtagggattgctaaggaattttaagaagtc--------------------aaatattcattaggcaatgttttcctttttatcctgcagtataatcctcctttattattcccagttctttatgaaaatcccactaactgcattccccacttgttagtggtactttagagaataaaagaaaataggcttggttcactggCAAGAGGACAAGAAATAGTCTTTAAGTGGAGAAGAAGCTGTTTCGTACAGTAGAAATTGGTAAGGACAGTGGCCACAGGGACTCAACTGTGAGAGGAGGTTAAAAATTTATCAGGAGCAGTATTTTAAACAAAAATCCTCAAAAATAATAGAATCCTTCTCCCATAGAAAATAATTTTCAGAAATACAATGGAGAGTGTCAGAATTTCTTCAGAAAGTAGAAAGAATTTT
s panTro5.chr6              29280306 1474 + 175400573 --ATAGAATGTAATATTTGAATGAATAAATGCACTTATATCAATAGCCTGACAAAGTGTTTTAAAGTATACTACAGTTACCATGACAAAGTGTTTCTCTGAAGAAACTTGTCTTTGAAGAATAATGAGATTGGTAAGAAAACATAAGTAAAAAGAACTACCAAGGAACATTTCCATCCAACTGATTTTAAAGAGAAT-AAATTGACCTGGAGTTAATTACCTAGTAGAATTAATTTCTACACAGTGATTTGGAATTTGGGAGTACAATTAGTGAAAACAGGTACTGGAATTGCTCCAGTGTTGGGAATGGAACCACATATTCATAAATGGGTACTTATTGGTACTAGAAAATTTTCTACACAATTACTCTACATTAAATATTACTCCAGGTTTTCAGGACATGGAAATAGCTTCTTTTTAAAAAATCCTTTTCATGTTACTTCTCCACCTAGATAGTTTCAAAAAGTGTATTATTTTTTGATTTCAAAATTTTATTCATTGAAACATAAACTTGGTCAGTTCTATTCAAGACATCAATATAAAGAGAAATCACTGAATTGTA-GAAAGGTTTGTATAAATTAAATTGTAAAAGTGTGAGCTAAAAATATGCAGTATTAATACAGAAAGCTTCTTAGTAATAATACCAAATATGTGCTCCTTATAATCACATGGATCAAAATTGTATACTCTTTAGTTAAGGGATGTAATGGGGAAAAATAGAAGATTGGAATTGTTTTAATTGCATCTGTGTTCTGAGGAATGG---------AGCAGCAGCAGC---AGAAGAAAAGGTGTTCTTTTACTTAAAACAACAAATTCTA----TTTTCTAATGCAAGGTGAGTGTATCTTTACCCCTTATTCTAGTGTTTATAGAAGA----TAGAGCCAGACAAATATTTCTCTCTAAGTGATAGTGACATTATTCCTTCACAGACACTACAATTGAAAGAATTGGAGGTCCTA-GGTCAGAGACAAAGACAGATTGGAATAGAAGTTGGGACCgaaagtaaataagatcttccaaaacatggagcaagggggacctaaaa-aagcag--acatccagagagcaaagctctgtggtagggattgctaaggaattttaagaagtc--------------------aaatattcattaggcaatgttttcctttttatcctgcagtataatcctcctttattattcccagttctttatgaaaattccactaactgcattccccacttgttagtggtactttagagaataaaagaaaataggcttggttcactggCAAGAGGACAAGAAATAGTCTTTAAGTGGAGAAGAAGCTGTTTCATACAGTAGAAATTGGTAAGGACAGTGGCCACAGGGACTCAACTGTGAGAGGAGGTTAAAAATTTATCAGGAGCAGTATTTTAAACAAAAATCCTCAAAAATAATAGAATCCTTCTCCCATAGAAAATAATTTTCAGAAATACAATGGAGAGTGTCAGAATTTCTTCAGAAAGTAGAAAGAATTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29526496 1475 + 173848474 --ATAGAATGTAATATTTGAATGAATAAATGCACTTATATCAATAGCCTGACAAAGTGTTTTAAAGTATACTACAGTTACCATGACAAAGTGTTTCTCTGAAGAAACTTGTCTATGAAGAATAATGAGATTGGTAAGAAAACATAAATAAAAAGAACTACCAAGGAACATTTCCATCCAACTGATTTTAAAGAGAAT-AAATTGACCTGGAGTTAATTACCTAGTAGAATTAATTTCTACACAGTGATTTGGAATTTGGGAGTACAATTAGTGAAAACAGGTACTGGAATTGCTCCAGTGTTGGGAATGGACCCACATATTCATAAATGGGTACTTATTGGTACTAGAAAATTTTCTACACAATTACTCTACATTAAATATTACTCCAGGTTTTCAGGACATGGAAGTAGCTTCTTTTTAAAAAATCCTTTTCATGTTACTTCTCCACCTAGATAGTTTCAAAAAGTGTATTATTTTTTGATTTCAAAATTTTATTCATTGAAACATAAACTTGGTCAGTTCTATTCAAGACATCAATATAAAGAGAAATCACTGAATTGTA-GAAAGGTTTGTATAAATTAAATTGTAAAAGTGTGAGCTAAAAATATGCAGTATTAATACAGAAAGCTTCTTAGTAATAATACCAAATATGTGCTCCTTATAATCACATGGATCAAAATTGTATACTCTTTAGTTAAGGGATGTAATGGGGAAAAATAGAAGATTGGAATTGTTTTAATTGCATCTGTGTTCTGAGGAATGG---------AGCAGCAGCAGC---AGAAGAAAAGGTGTTCTTTTACTTAAAACAACAAATTCTA----TTTTCTAATGCAAGATGAGTGTATCTTTACCCCTTATTCTAGTGTTTATAGAAGA----TAGAGCCAGACAAATATTTCTCTCTAAGTGATAGTGACATTATTCCTTCACAGACACTACAATTGAAAGAATTGGAGGTCCTA-GGTCAGAGACAAAGACAGATTGGAATAGAAGTTGGGACCgaaagtaaataagatcttccaaaacatggagcaagggggacctaaaa-aagcag--acatccagagagcaaagctctgtggtagggattgctaaggaattttaagaagtca-------------------aaatattcattaggcaatgttttcctttttatcctgcagtataatcctcctttattattcccagttctttatgaaaatcccactaactgcattccccacttgttagtggtactttagagaataaaagaaaataggcttggttcactggCAAGAGGACAAGAAATAGTCTTTAAGTGGAGAAGAAGCTGTTTCATACAGTAGAAATTGGTAAGGACAGTGGCCACAGGGACTCAACTGTGAGAGGAGGTTAAAAATTTATCAGGAGCAGTATTTTAAACAAAAATCCTCAAAAATAATAGAATCCTTCTCCCATAGAAAATAATTTTCAGAAATACAATGGAGAGTGTCAGAATTTCTTCAGAAAGTAGAAAGAATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5323514 1473 +   6154872 --ATAGAATGTAATATTTGAATGAATAAATGCACTTATATCAATAGCCTGACAAAGTGTTTTAAAGTATACTACAGTTACCATGACAAAGTGTTTCTCTGAAGAAACTTGTCTATGAAGAATAATGAGATTGGTAAGAAAACATAAATAAAAAGAACTACCAAGGAACATTTCCATCCAACTAATTTTAAAGAGAAT-AAATTGACCTGGAGTTAATTACCTAGTAGAATTAATTTCTACACAGTGATTTGGAATTTGGGAGTACAAATAGTGAAAACAGGTACTGGAATTGCTCCAGTGCTGGGAATGGACCCACATATTCAGAAATGCGTACTTATTGGTACTAGAAAATTTTCTACACAATTACTCTACATTAAATATTACTCCAGGTTTTCAGGACATGGAAGTAGCTTCTTTTTAAAAAATCCTTTTCATGTTACTTCTCCACCTAGATAGTTTCAAAAAGTGCATTATTTTTCAATTTCAAAATTTTATTCATTGAAACATAAACTTGGTCAGTTCTATTCAAGACATCAATATGAAGAGAAATCACTGAATTGTA-GAAAGGTTTGTATAAATTAAATTGTAAAAGTGTGAGCTAAAAATATGCATTATTAATACAGAAAGCTTCTTAGTAATAATACCAAATATGTGCTCCTTATAATCACATGGATCAAAATTGTATACTCTTTAGTTAAGGGATGTAATGGGGAAAAATAGAAGATTGGAATTGTTTTAATTGCATCTGTGTTCTGAGGAATGG---------AGCAGCAGCAGC---AGAAGAAAAGGTGTTCTTTTACTTAAAACAACAAATTCTA----TTTTCTAATGCAAGGTGAGTGTATCTTTACCCCTTATTCTAGTGTTTATAGAAGA----TAGAGCCAGACAAATATTTCTCTCTAAGTGATAGTGACATTATTCCTTCACAGACACTACAATTGAAAGAATTGGAGGTCGTA-TGTCAGAGACAAAGACAGATTGGAATAGAAGTTGGGACCgaaagtaaataagatcttccaaaacatggagcaaggggga-ctaaaa-aagcag--acatccagagagcaaagctctgtggtagggattgctaaggaattttaagaagtc--------------------aaatattcattaggcaatgttttcctttttatcctgcagtataatcctcctttattattcccagttctttatgaaaatcccactaactgcattccccacttgttagtggtactttagagaataaaagaaaataggcttggttcaCTGGCAAGAGGACAAGAAATAGTCTTTAAGTGGAGAAGAAGCTGTTTTGTACAGTAGAAATTGGTAAGGACAGTGGCCACAGGGACTCAACTGTGAGAGGAGGTTAAAAATTTATCAGGAGCAGTATTTTAAACAAAAATCCGCAAAAATAATAGAATCCTTCTCCCATAGAAAATAATTTTCAGAAATACAATGGAGAGTATCAGAATTTCTTCAGAAAGTAGAAAGAATTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74336378 1469 + 122973662 --ATAGAATGTAATATTTGAATGAATAAATGCACTTATATCAGTAGCCTGACAAAGTGTTTTAAAGTATACTACAGTTACCATGACAAAGTGTTTCTCTGAAGAAACTTGTCTATGAAGAATAATGAGATTGGTAATAAAACATAAATAAAAAGAACCACCAAGGAACATTTCCATCCAACTAATTTTAAAGAGAATAAAACTGACCTGGAGTTAACTACCTAGTAGAATTAATTTCTACACAGTGATTTGGAATTCGGGAGTACAAATAGTGAAAACAGGTACTGGAATTGCTCCAGTGTTGGGAACAGACCCACATATTCATAAATGGGTACTTACTGGTACTGGAAAATTTTCTACACAATTACTCTACATTAAATATTACTCCAGGTTTTCAGGACATGGAAGTAGCTTCTTTTTAAAAAATCCTTTCCATGTTACTTCTCCACCTAGATAGTTTCAAAAAGTGTGTTATTTTTCGATTTCAAAATTTTATTCATTGAAACA------TGTTCAGTTCTATTCAAGATATCAATATAAAGAGAAATCACTGAATTGTA-GAAAGATTTGTATAAATTAAATTCTAAAACTGTGAGCTAAAAATATGCGTTATTAATACAGAAAGCTTCTTAGTAATAATACCAAATATGTGCTCCTTATAATCACATGGATCAAAATTGTACACTCTTTAGTTAAGGGATGTAATGGGGAAAAATAGAAAATTGGAATTGTTTTAATTGCATCTGTGTTCTGAGGAATGG---------AGCAGCAGCAGC---AGAAGAAAAGGTGTTCTTTTACTTAAAACAACAAATTCTG----TTTTCTAATGCAAGGTGAGTGTATCTTTACCCCTTATTCTAGTGTTTATAGAAGA----TAGAGCCAGACAAATATTTTTCTCTAAGTGATAGTGACATTATTCCTTCACAGACACTACAACTGAAAGAATTGGAAGTCCTA-GGTCAGAGACAAGGACAGATTGGAATAGAAGTTGGGACCgaaagtaaataagatcttccaaaacatggagcaagggggacctaaaa-aaacag--acatccagagagcaaagctctttggtagggattgctaaggaattttaagaagtc--------------------aaatattcattaggcaatgttttcctttttatcctgcagtataatcctcctttattattcccagttctttatgaaaatcctactacctgcatcccccacttgttagtggtactttagagaataaaagaaaataggcctggttcactggTAAGAGGACAAGAAATAGTCCTTAAGTGGACAAGAAGCTGTTTCATACAGTAGACATTGGTAAGGACAATGGCCACAGGGACTGAACTGTGAGAGGAGGTTAAAAATTTATCAGGAGCAGTATTTGAAACAAAAGTTCTCAAAAATAATAGAATCCTTCTCCCACAGAAAATAATTTTCAGAAATACAGTGGAGAGTATCAGAATTTCTTCAGGAAGTAGAAAGAGTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29492716 1493 + 172585720 --atagaatgtaatatttgaatgaataaatgctcttatatcaattgcctgacaaagtgttttaaagtatactacagttattatgacaAAGTTTTTCTCTGAAGAAACTTGTCTATGAAGAATAATGAGATTGGTAATAGAACATAAATAAAAAGAACTAACAAGGAACATTTCCATCCAACTAACTTTAAAGAGGATAAAATTGACCTAGAGTTAATTGCCTAGTAGAATTAATTTCTACACAGTGATTTGGAATTTGGGAGTACAAATAGTGAAAACAGGTACTGGAATTGCTTCAGTGTTGGGAATGGACCCACATAGTCATAAATGGGTACTTATTGGTACTAGAAAATTTTCTCCACAATTACTCTACATTAAATATTACTCCAGGTTTTCAGGACATGGAAGTAGCTTCTTTTTAAAAAATCCTTTCCATGTTACTTCTCCACCTAGATAGTTTCAAAAAGTGTATTATATTTTGATTTCAAAATTTTATTCATTGAAACATAAACTTGTTCACTTCTATTCAAGACATCAAAATAAAGATAAATCATTGAATTGTAGGAAAGGTTTGTATAAATTAAATTCTAAAAGTGTGAGCTAAAAATATGTGTTATTAATACAGAAAACTTCTTAGTAATAACACCAAATATGTGCTCCTTATAATCACATGGATCAAAATTGTACACTCTTTAGTTAAGGGATGTAATGGGGAAAAATAGACGATTGGAATTGTTTTAATTGCATCTGTGTTTTGAGGAATGGagcagcagcagcagcagcagcagcagAAGAAAAGGTGTTCTTTTACTTAAAACAACAAATTCTAACTGTTTTCTAATGCAAGGTGAGTGTATCTTTACCCCTTATTCTAGTGTTTATAGAAGA----TAGAGCCAGACAAATATTACTCTCTAAGTGATAGTGACATCATTCCTTCACAGACACTACAGTTGAAAGAATCGGAGGTCCTA-GGTCAGAGACAAAGACAGATTGGAGTAGAAGTTGGGGCCAAAAGTAAATAAGATCTTCCAAAACGTGGAGCAAGGGGGACCTAAAAAAAACAG--ACACCCAgagagcaaagctctgtggtagggattgctaaggaattttgagaagtc--------------------aaatattcattaggcaatgttttcctttttatcctgtagtataatcctcatttattattcccagttctttatgaaaatcctactaactgcatcccccatttgttagtggtattttagagaataaaagaaCATAGACTTGGTTCCCTGGTAAGAGGACAAGAAATAGTCTTTAAGCGGACAAGAAGCTGTTTCTCATAGTAGAAATTGGTGAGGACAGTGACCACAGGGACTCAACTGTGAGAGGAGGTTAAAAATGTATCAGGAGCAGTATTTTAAACAAAAATCTTCAAAAATAATAAAATCCTTCTCCCATAGAAAATAATTTCCAGAAATGCAATGAAGAGTATCACAATTTCTTCAGAAAGTAGATGGAGTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29153834 1490 - 170955103 --atagaatgtaatatttgaatgaataaatgctcttatatcaattgcctgacaaagtgttttaaagtatactacagttattatgacaAAGTTTTTCTCTGAAGAAACTTGTCTATGAAGAATAATGAGATTAGTAATAGAACATAAATAAAAAGAACTAATAAGGAACATTTCCATCCAACTAACTTTAAAGAGGATAAAATTGACCTAGAGTTAATTGCCTAGTAGAATTAATTTCTACACAGTGATTTGGAATTTGGGAGTACAAATAGTGAAAACAGGTACTGGAATTGCTTCAGTGTTGGGAATGGACCCACATAGTCATAAATGGGTACTTATTGGTACTAGAAAATTTTCTCCACAATTACTCTACATTAAATATTACTCCAGGTTTTCAGGACATGGAAGTAGCTTCTTTTTAAAAAATCCTTTCCATGTTACTTCTCCACCTAGATAGTTTCAAAAAGTGTATTATATTTTGATTTCAAAATTTTATTCATTGAAACATAAACTTGTTCACTTCTATTCAAGACATCAAAATAAAGATAAATCATTGAATTGTAGGAAAGGTTTGTATAAATTAAATTCTAAAAGTGTGAGCTAAAAATATGTGTTATTAATACAGAAAACTTCTTAGTAATAACACCAAATATGTGCTCCTTATAATCACATGGATCAAAATTGTACACTCTTTAGTTAAGGGATGTAATGGGGAAAAATAGACGATTGGAATTGTTTTAATTGCATCTGTGTTTTGAGGAATGG---agcagcagcagcagcagcagcagaagAAAAGGTGTTCTTTTACTTAAAACAACAAATTCTAACTGTTTTCTAATGCAAGGTGAGTGTATCTTTACCCCTTATTCTAGTGTTTATAGAAGA----TAGAGCCAGACAAATATTACTCTCTAAGTGATAGTGACATCATTCCTTCACAGACACTACAGTTGAAAGAATCGGAGGTCCTA-GGTCAGAGACAAAGACAGATTGGAGTAGAAGTTGGGGCCAAAAGTAAGTAAGATCTTCCAAAACGTGGAGCAAGGGGGACCTAAAAAAAACAG--ACACCCAgagagcaaagctctgtggtagggattgctaaggaattttgagaagtc--------------------aaatattcattaggcaatgttttcctttttatcctgtagtataatcctcatttattattcccagttctttatgaaaatcctactaactgcatcccccatttgttagtggtattttagagaataaaagaacatagacttggttccctggTAAGAGGACAAGAAATAGTCTTTAAGCGGACAAGAAGCTGTTTCTCATAGTAGAAATTGGTGAGGACAGTGACCACAGGGACTCAACTGTGAGAGGAGGTTAAAAATGTATCAGGAGCAGTATTTTAAACAAAAATCTTCAAAAATAATAAAATCCTTCTCCCATAGAAAATAATTTCCAGAAATGCAATGAAGAGTATCACAATTTCTTCAGAAAGTAGATGGAGTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2146156 1487 -   2996164 --atagaatgtaatatttgaatgaataaatgctcttatatcaattgcctgacaaagtgttttaaagtatactacagttattatgacaAAGTTTTTCTCTGAAGAAACTTGTCTATGAAGAATAATGAGATTGGTAATAGAACATAAATAAAAAGAACTAACAAGGAACATTTCCATCCAACTAATTTTAAAGAGGATAAAATTGACCTAGAGTTAATTGCCTAGTAGAATTAATTTCTACACAGTGATTTGGAATTTGGGAGTACAAATAGTGAAAACAGGTACTGGAATTGCTTCAGTGTTGGGAATGGACCCACATAGTCATAAATGGGTACTTATTGGTACTAGAAAATTTTCTCCACAATTACTCTACATTAAATATTACTCCAGGTTTTCAGGACATGGAAGTAGCTTCTTTTTAAAAAATCCTTTCCATGTTACTTCTCCACCTAGATAGTTTCAAAAAGTGTATTATGTTTTGATTTCAAAATTTTATTCATTGAAACATAAACTTGTTCACTTCTATTCAAGACATCAAAATAAAGATAAATCATTGAATTGTAGGAAAGGTTTGTATAAATTAAATTCTAAAAGTGTGAGCTAAAAATATGTGTTATTAATACAGAAAACTTCTTAGTAATAACACCAAATATGTGCTCCTTATAATCACATGGATCAAAATTGTACACTCTTTAGTTAAGGGATGTAATGGGGAAAAATAGACGATTGGAATTGTTTTAATTGCATCTGTGTTTTGAGGAATGG------AGCAGCAGCAGCAGAAGAAGAAGAAAAGGTGTTCTTTTACTTAAAACAACAAATTCTAACTGTTTTCTAATGCAAGGTGAGTGTATCTTTACCCCTTATTCTAGTGTTTATAGAAGA----TAGAGCCAGACAAATATTACTCTCTAAGTGATAGTGACATCATTCCTTCACAGACACTATAGTTGAAAGAATCGGAGGTCCTA-GGTCAGAGACAAAGACAGATTGGAGTAGAAGTTGGGGCCAAAAGTAAATAAGATCTTCCAAAACGTGGAGCAAGGGGGACCTAAAAAAAACAG--ACACCCAgagagcaaagctctgtggtagggattgctaaggaattttgagaagtc--------------------aaatattcattaggcaatgttttcctttttatcctgtagtataatcctcatttattattcccagttctttatgaaaatcctactaactgcatcccccatttgttagtggtattttagagaataaaagaacatagacttggttccctggTAAGAGGACAAGAAATAGTCTTTAAGCGGACAAGAAGCTGTTTCTCATAGTAGAAATTGGTGAGGAGAGTGACCACAGGGACTCAACTGTGAGAGGAGGTTAAAAATGTATCAGGAGCAGTATTTTAAACAAAAATCTTCAAAAATAATAAAATCCTTCTCCCATAGAAAATAATTTCCAGAAATGCAATGAAGAGTATCACAATTTCTTCAGAAAGTAGATGGAGTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2026946 1482 -   2157725 --atagaatgtaatatttgaatgaataaatgcacttatatcaattgcctgacaaagtgttttaaagtatactacagttatcatgacaAAGTTTTTCTCTGAAGAAACTTGTCTGTGAAGAATAATGAGATTGGTAATAGAACATAAATAAAAAGAACTACCAAGGAACATTTCCATCCAACTAACTTTAAAGAAGATAAAATTGACCTAGAGTTAATTGCCTAGTAGAATTAATTTCTACACAGTGATTTGGAATTTGGGAGTACAAATAGTGAAAACAGGTACTGGAATTGCTTCAGTGTTGGGAATGGACCCACATAGTCATAAGTGGGTACTTATTGGTACTAGAAAATTTTCTCCACAATTACTCTACATTAAATATTACTCCAGGTTTTCAGGACATGGAAGTAGCTTCTTTTTAAAAAATCCTTTCCATGTTACTTCTCCACCTAGATAGTTTCAAAAAGTGTATTATGTTTTGATTTCAAAATTTTATTCATTGAAACATAAACTTGTTCACTTCTATTCAAGACATCAAAATAAAGATAAATCACTGAATTGTAGGAAAGGTTTGTATAAATTAAATTCTAAAAGTGTGAGCTAAAAATATGCGTTATTAATACAGAAAGCTTCTTAGTAATAACACCAAATATGTGCTCCTTATAATCACATGGATCAAACTTGTACACTCTTTAGTTAAGGGATGTAATGGGGAAAAATAGAAGATTGGAATTGTTTTAATTGCATCTGTGTTCTGAGGAATGG---------AGCAGCAGCAGCGGAAGAAGACAAGGCGTTCTTTTACTTAAAACAACAAATTCTAACTGTTTTCTAATGCAAGGTGAATGTATCTTTACCCCTTATTCTAGTGTTTATAGAAGA----TAGAGCCAGACAAATATTA----CTAAGTGATAGTGACATCATTCCTTCACAGACACTACAGTTGAAAGAATCAGAGGTCCTA-GGTCAGAGACAAAGACAGATTGGAATAGAAGTTGGGGCCAaaagtaaataagatcttccaaaacgtggagcaagggggacctaaaagaaacagacacacccagagagcaaagctctgtggtagggattgctaaggaattttaagaagtc--------------------aaatattcattaggcaatgttttcctttttatcctgcagtgtaatcctcctttattattcccagttctttatgaaaatcctactacgtgcatcccccatttgtttgtggtattttagagaataaaagaacatagacttggttccctggTAAGAGGACAAGAAATAGTCTTTAAGCGGACAAGAAGCTGTTTCTCATAGTAGAAATTGGTGAGGACAGTGACCACAGGGACTCAACTGTGAGAGGAGGTTAAAAATGTATCAGGAGCAGTATTTTAAACAAAAATCTTCAAAAATAATAAAATCCTTCTCCCATAGAAAATAATTTCCAGAAATGCAATGAAGAGTATCACAATTTCTTCAGAAAGTAGATGGAGTTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28457035 1486 -  71996105 --atagaatgtaatatttgaatgaataaatgcacttatatcaattgcctgaccaagtgttttaaagtatactatagTTATCATGACAAAGTTTTTCTCTGAAGAAACTTGTCTATGAAGAATAATGAGATTGGTAATAGAACATAAATAAAAAGAACTACCAAGGAACATTTCCATCCAACTAACTTTAAAGAAGATAAAATTGACCTAGAGTTAATTGCCTAGTAGAATTAATTTCTACACAGTGATTTGGAATTTGGTAGTACAAATAGTGAAAACAGGTACTGGAATTGCTTCAGTGTTGGGAATGGACCCACATAGTCATAAATGGGTACTTATTGGTACTAGAAAATTTTCTCCACAATTACTCTACATTAAATATTACTCCAGGTTTTCAGGACATGGAAGTAGCTTCTTTTTAAAAAATCCTTTCCATGTTACTTCTCCACCTAGATAGTTTCAAAAAGTGTATTATGTTTTGATTTCAAAATTTTATTCATTGAAACATAAACTTGTTCACTTCTATTCAAGACATCAAAATAAAGATACATCACTGAATTGTAGGAAAGGTTTGTATAAATTAAATTCTAAAAGTGTGAGCTAAAAATATGCGTTATTAATACAGAAAGCTTCTTAGTAATAACACCAAATATGTGCTCCTTATAATCACATGGATCAAACTTGTACACTCTTTAGTTAAGGGATGTAATGGGGAAAAATATAAGATTGGAATTGTTTTAATTGCATCTGTGTTCTGAGGAATGG---------AGCAGCAGCAGCGGAAGAAGACAAGGCGTTCTTTTACTTAAAACAACAAATTCTAACTGTTTTCTAATGCAAGGTGAGTGTATCTTTTCCCCTTATTCTAGTGTTTATAGAAGA----TAGAGCCAGACAAATATTACTCTCTAAGTGATAGTGACATCATTCCTTCACAGACACTACAGTTGAAAGAATCGGAGGTCCTA-GGTCAGAGACAAAGACAGATTGGAATAGAAGTTGGGGCCAAAAGTAAGTAAGATCTTCCAAAATGTGGAGCAAGGGGGACCTAAAAGAAACAGACACACCCAGAGGGCAAAGctctgtggtagggattactaaggaattttaagaagtc--------------------aaatattcattaggcaatgttttcctttttatcttgcagtgtaatcctcctttattattcccagttctttatgaaaatcctactaactgcatcccccatttgttagtggtattttagagaataaaagaacatagacttggttccctggTAAGAGGACAAGAAATAGTCTTTAAGCGGACAAGAAGCTGTTTCTCATAGTAGAAATTGGTGAGGACAGTGACCACAGGGACTCAACTGTGAGAGGAGGTTAAAAATGTATCAGGAGCAGTATTTTAAACAAAAATCTTCAAAAATAATAAGATCCTTCTCCCATAGAAAATAATTTCCAGAAATGCAATGAAGAGTATCACAATTTCTTCAGAAAGTAGATGGAGTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2164818 1482 +   2316924 --atagaatgtaatatttgaatgaataaatgcacttatatcaattgcctgacaaagtgttttaaagtatactacagttatcatgacaAAGTTTTTCTCTGAAGAAACTTGTCTATGAAGCATAATGAGATTGGTAATAGAACATAAATAAAAAGAACTACCAAGGAACATTTCCATCCAACTAACTTTAAAGAAGATAAAATTGACCTAGAGTTAATTGCCTAGTAGAATTAATTTCTACACAGTGATTTGGAATTTGGGAGTACAAATAGTGAAAACAGGTACTGGAATTGCTTCAGTGTTGGGAATGGACCCACATAGTCATAAATGGGTACTTATTGGTACTAGAAAATTTTCTCCACAATTACTCTACATTAAATATTACTCCAGGTTTTCAGGACATGGAAGTAGCTTCTTTTTAAAAAATCCTTTCCATGTTACTTCTCCACCTAGATAGTTTCAAAAAGTGTATTATGTTTTGATTTCAAAATTTTATTCATTGAAACATAAACTTGGTCACTTCTATTCAAGACATCAAAATAAAGATAAATCACTGAATTGTAGGAAAGGTTTGTATAAATTAAATTCTAAAAGTGTGAGCTAAAAATATGCGTTATTAATACAGAAAGCTTCTTAGTAATAACACCAAATATGTGCTCCTTATAATCACATGGATCAAACTTGTACACTCTTTAGTTAAGGGATGTAATGGGGAAAAATAGAAGATTGGAATTGTTTTAATTGCATCTGTGTTCTGAGGAATGG---------AGCAGCAGCAGCGGAAGAAGACAAGGCGTTCTTTTACTTAAAACAACAAATTCTAACTGTTTTCTAATGCAAGGTGAATGTATCTTTACCCCTTATTCTAGTGTTTATAGAAGA----TAGAGCCAGACAAATATTA----CTAAGTGATAGTGACATCATTCCTTCACAGACACTACAGTTGAAAGAATCAGAGGTCCTA-GGTCAGAGACAAAGACAAATTGGAATAGAAGTTGGGGCCAaaagtaaataagatcttccaaaacgtggagcaagggggacctaaaagaaacagacacacccagagagcaaagctctgtggtagggattgctaaggaattttaagaagtc--------------------aaatattcattaggcaatgttttcctttttatcctgcagtgtaatcctcctttattattcccagttctttatgaaaatcctactacgtgcatcccccatttgtttgtggtattttagagaataaaagaacatagacttggttccctggTAAGAGGACAAGAAATAGTCTTTAAGCGGACAAGAAGCTGTTTCTCATAGTAGAAATTGGTGAGGACAGTGACCACAGGGACTCAACTGTGAGAGGAGGTTAAAAATGTATCAGGAGCAGTATTTTAAACAAAAATCTTCAAAAATAATAAAATCCTTCTCCCATAGAAAATAATTTCCAGAAATGCAATGAAGAGTATCACAATTTCTTCAGAAAGTAGATGGAGTTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2029157 1483 -   3067355 --atagaatgtaatatttgaatgaataaatgcacttatatcaattgcctgacaaagtgttttaaagtatactacagttatcatgacaAAGTTTTTCTCTGAAGAAACTTGTCTATGAAGAATAGTGAGATTTGTAATAGAACATAAATAAAAAGAATTACCAAGGAACATTTCCATCCAACTAACTTTAAAGAGGATAAAATTGACCTAGCGTTAATTGCCTACTAGAATTAATTTCTACACAGTGATTTGGAATTTGGGAATACAAATAGTGAAAACAGGTACTAGAATTGCTTCAGTGTTGGGAATGGACCCACATAGTCATAAATGGGTACTTATTGGTACTAGAAAATTTTCTCCACGATTACTCTACATTAAATATTACT-CAGGTTTTCAGGACATGGAAGTAGCTTCTTTTTAAAAAATCCTTTCCATGTTACTTCTCCACCTAGATAGTTTCAAAAAGTGTATTATGTTTTGATTTCAAAATTTTATTCATTGAAACATAAACTTGTTCATTTCTATTCAAGACATCAAAATAAAGATAAATCACTGAATTGTAGGAAAGGTTTGTATAAATTAAATTCTAAAAGTGTGAGCTAAAAATATGCGTTATTAATACAGAAAGATTCTTAGTAATAACACCAAATATGTGCTCCTTATAATCACATGGATCAAAATTGTACACTCTTTAGTTAAGGGACATAATGGGGAAAAATAGAAGATTGGAATTGTTTTAATTGCATCTGTGTTCTGAGGAATGG---------agcagcagcagcagcagaagAAAAGGTGTTCTTTTACTTAAAACAACAAATTCTAACTATTTTCTAATGCAAAGTGAGTGTATCTGTACCCCTTATTCTAGTGTTTATAGAAGA----TAGAGCCAGACAAATATTACTCTCTAAGTGATAGTGACAGCATTCCTTCACAGACACTACAGTTGAAAGAATCGGAGGTCCTA-GATCAGAGACAAAGACAGATTGGAATAGAAGTTGGGGCCAaaagtaaataagatcttccaaaacatggagcaagggggacctaaaaaaaacag--acacccagagagcaaagctctgtggtagggattgctaaggaattttaagaagtc--------------------aaatattcattaggcaatgttttcctctttatcctgcagtataatccttctttattattcccagttctttatgaaaatcctactaactgcatcccccatttgttagtggtattttagagaataaaagaaaatagacttggttcactggTAAGAGGACAAGAAATAGTCTTTAAGCGGACAAGAAGCTGTTTCTCGTAGTAGAAATTGGTGAGGACAGTGACCACAGGGACTCAACTGTGAGAGGAGGTTAAAAATGTATCAGGAGCAGTATTTTAAACAAAAATCTTCAAAAATAATAAAATCCTTCTCCCATAGAAAATAATTTCCAGAAATGCAATGAAGAGTATCACAATTTCTTGAGAAAGTAGATGGAGTTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171547346 1479 - 171630274 atatcgaatgtaatatttgattcaataaatacttttatatcaattgcatggcaaagtattttaaagtatactacagttatcatgacaGTGTTTTTCTCTGAAGAAACTTGCCTATGAAGAACAATGAAACTGGTAATAAAACATAAATACCAAGAACTATCAAGGGACATTTCCATCCAACTAATTTTAAGAAGGATAAAATTGACCTAGAGTTAATTACCCAGTAGACTTAATTGCTGTGCAGTGATTTGGAATTCAGAAGTAAAAATAGTGAAAACAGGTACTGGAATTGTTCCGTTGTTGGGAATGGGCACACATATTTGTAAATGGGTATTTATTGGTACTAGAAAATTTTCTCCACAATTACTCTGTATTAAATATTACTCCAGATTTTCAGGACATGTAAGTTTCTTCTCTTAAAAAAATTCTTTCCATGTTACTTCTCCACC----TAGTTTTAAAAAGTGTATTATGTTTTGATTTC-AAATTTTATTCATTGAAACATAAACTTGTTCAGTTCTATTT--GATATCAAAATAAAGAGAAATCACTGAATTGTA-GAAATGTTTGTATAGATTAAATTCTAAAAGTGTGAGTTAAAAATACGCATTATTAATACAGAAAGCTTCTTAGTGATAACACCAAATATGTACTCCTTATAATCACATGGAATAAAATAGTACACTCTTTAGTTAAGGGATATAATGGGGAAAAGTGGAAAATTGGAATTAGTTTAACTGCATCTGTGTTCTGAAGTATGA---------AACAGTAGCAGTAGTAGAAGAAAAAGTATTTTTTTACTTCAAACAACACATTATAACTGCTCTCTAATGCAAGGTGAGTTTGTCTTTACCCTTTATTCTAGTGTTTATAGAAGATAGTTAGAGCCAAACCAATATTT----CTAAGTGCCAGTGACATTATTCCTTCACAGACACTAAAGTCAAAGGAACTGGAGGTCCTAGGGTCAGAGGCAAAGACAGATTGAAATAGAAGTCAGGACCAAAAGTAAATAAGATCATCTAAAACAAGGAGCAAGGGACACCTAAAA-AAGCTG--GCATCCAGAGAGCAAAGCTCTGTGGTAGGGATTGCCAAGGAATTTTAAGAAGTCAAAAAAAAAAAAAAAAAGTCAAATATTCATTAGGCAATGTTTTCCTTTTTATCCTGCAGTATAACCCTCCTTTATTATTCCCAGTTCTTTATGAAAATCCTACTAACTGCATCCCCCATTTGTTAGTGGTATTTTAGAGAATTAAA-AAAATAGGCTT---------------GGACAAGATATAGTCTTTAAGTGGACAAAAAGCTGTTTCTCACAGTAGAAATTGGTTAGGACAGTGGTCACAGGGACTCAATTATGAGAGGAGGTTAGAAATTTATCAAGAGCAGTATTGCAAACAAAAATCCTCAAAAATAATAGAATCGTTCTCCCATAGAAAATATTTTTCAGAAATACAATGGAGAGAATCAGAATTTCTTTAGAAAGTAG---GAGTTTT
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            181896   17 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I

a score=22585.000000
s hg38.chr6_GL000254v2_alt    306738 5 +   4827813 AAAAT
s panTro5.chr6              29281780 5 + 175400573 AAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29527971 5 + 173848474 AAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5324987 5 +   6154872 AAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74337847 5 + 122973662 AAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29494209 5 + 172585720 AAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29155324 5 - 170955103 AAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2147643 5 -   2996164 AAAAT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28458521 5 -  71996105 AAAAT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     2030640 5 -   3067355 AAAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171548825 5 - 171630274 AAAAT
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            181896 17 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e manLeu1.NW_012104165v1     2166300 0 +   2316924 C
e cerAty1.NW_012001495v1     2028428 0 -   2157725 C

a score=12850.000000
s hg38.chr6_GL000254v2_alt    306743 10 +   4827813 TTAACTTATG
s panTro5.chr6              29281785 10 + 175400573 TTAACTTATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29527976 10 + 173848474 TTAACTTATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5324992 10 +   6154872 TTAACTTATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74337852 10 + 122973662 TTAACTTATG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171548830 10 - 171630274 TTAACTTTTG
i calJac3.chr4             C 0 I 2
e dasNov3.JH561790            181896 17 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e colAng1.NW_012115566v1     2030645  0 -   3067355 C
e manLeu1.NW_012104165v1     2166300  0 +   2316924 C
e chlSab2.chr17             28458526  0 -  71996105 C
e cerAty1.NW_012001495v1     2028428  0 -   2157725 C
e macNem1.NW_012011356v1     2147648  0 -   2996164 C
e macFas5.chr4              29155329  0 - 170955103 C
e rheMac8.chr4              29494214  0 + 172585720 C

a score=258860.000000
s hg38.chr6_GL000254v2_alt    306753 289 +   4827813 CAggttgggcacggtggctcacgcctgt-aatcccagcactttgggaggccgaggtgggtggattacctgaggtaaggagttcgagaccagcctggccaatatggtgaaaccctgtctctactaaaaatacaaaagttagccggatgtggtggcacacgcctgtagtcccagctactcgggaggctgaggcaggaggatggcatgaacccgggaggtggaggttgcagtgagctgagattgtgccactgcactccagcctgggcgacagagacagactccatctcaaaaa
s panTro5.chr6              29281795 289 + 175400573 CAggctgggcacggtggctcacgcctgt-aatcccagcactttgggaggccgaggtgggtggattacctgaggtcaggagtttgagaccagcctggccaatacggtgaaaccccgtctctactaaaaatacaaaagttagccggatgtggtggcacacgcctgtagtcccagctactcgggtggctgaggcaggaggatggcatgaacccgggaggtggaggttgcagtgagctgagattgtgccactgcactccagcctgggcgacagagacagactccatctcaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29527986 289 + 173848474 CAggctgggcacggtggctcacgcctgt-aatcccagcactttgggaggccgaggtgggtggattacctgaggtcaggagtttgagaccagcctggccaatatggtgaaaccccgtctctactaaaaatacaaaagttagccggatgtggtggcacacgcctgtagtcccagctactcgggaggctgaggcaggaggatggcatgaacccgggaggtggaggttgcagtgagctgagattgtgccactgcactccagcctgggcgacagagacagactccatctcaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5325002 289 +   6154872 CAggctgggcacggtggctcacgcctgtaaatcccagcactttgggaga-cgaggtcggtggattacctgaggtcaggagtttgagaccagcctggccaatatggtgaaaccccgtctctactaaaaatacaaaagttagccggatgtggtggcacacgcctgtagtcccagctactcgggaggctgaggcaggaggatggcatgaacccgggaggtggaggttgcagtgagccgagattgtgccactgcactccagcctgggcgacagagacagactccatctcaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74337862 289 + 122973662 CAggctgggcacggtggctcacacctgt-aatcccagcactttgggaggccgaggcaggtggattacctgaggtcaggagttcgagaccagcctggccaatatggtgaaaccccatctctactaaaaatacaaaaattagccaggtgtggtggcacatgcctgcagtcccagctactcgggaggctgaggcaggagaatggcacaaacccgggaggcggaggttgcagtgagccgagattgtgccactgcactcctgcctgggcgacagagcaagactccatctcaaaaa
i nomLeu3.chr1a            C 0 C 0
e dasNov3.JH561790            181896  17 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171548840   2 - 171630274 I
e colAng1.NW_012115566v1     2030645   0 -   3067355 C
e manLeu1.NW_012104165v1     2166300   0 +   2316924 C
e chlSab2.chr17             28458526   0 -  71996105 C
e cerAty1.NW_012001495v1     2028428   0 -   2157725 C
e macNem1.NW_012011356v1     2147648   0 -   2996164 C
e macFas5.chr4              29155329   0 - 170955103 C
e rheMac8.chr4              29494214   0 + 172585720 C

a score=1337.000000
s hg38.chr6_GL000254v2_alt    307042 5 +   4827813 -aaaaa
s panTro5.chr6              29282084 5 + 175400573 -aaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29528275 4 + 173848474 -aaaa-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5325291 5 +   6154872 -aaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74338151 4 + 122973662 -aaaa-
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2028428 5 -   2157725 AAAAG-
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2166300 5 +   2316924 AAAAG-
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH561790            181896 17 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171548840 2 - 171630274 I
e colAng1.NW_012115566v1     2030645 0 -   3067355 C
e chlSab2.chr17             28458526 0 -  71996105 C
e macNem1.NW_012011356v1     2147648 0 -   2996164 C
e macFas5.chr4              29155329 0 - 170955103 C
e rheMac8.chr4              29494214 0 + 172585720 C

a score=33063.000000
s hg38.chr6_GL000254v2_alt    307047 7 +   4827813 TTAACTT
s panTro5.chr6              29282089 7 + 175400573 TTAACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29528279 6 + 173848474 -TTACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5325296 7 +   6154872 TTAACTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74338155 6 + 122973662 -aaaaTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29494214 7 + 172585720 TTAACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29155329 7 - 170955103 TTAACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2147648 7 -   2996164 TTAACTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2028433 7 -   2157725 TTAACTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28458526 7 -  71996105 TTAACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2166305 7 +   2316924 TTAACTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2030645 7 -   3067355 TTAACTT
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH561790            181896 17 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I
e calJac3.chr4             171548840 2 - 171630274 I

a score=222678.000000
s hg38.chr6_GL000254v2_alt    307054 33 +   4827813 ATGTATTAATACAAAAACCAATATCAGAAATGC
s panTro5.chr6              29282096 33 + 175400573 ATGTATTAATACAAAAACCAATATCAGAAATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29528285 33 + 173848474 ATGTATTAATACAAAAACCAATATCAGAAATGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5325303 33 +   6154872 ATGTATTAATACAAAAAACAATATCAGAAATGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74338161 33 + 122973662 ATGTATTAATACAAAAAGCAATATCAGAAATGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29494221 33 + 172585720 ATGTATTAATACAAAAAACAATATCAGAAATGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29155336 33 - 170955103 ATGTATTAATACAAAAAACAATATCAGAAATGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2147655 33 -   2996164 ATGTATTAATACAAAAAACAATATCAGAAATGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2028440 33 -   2157725 ATGTATTAATACAAAAAACAATATCAGAAATGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28458533 33 -  71996105 ATGTATTAATATAAAAAACAATATCAGAAATGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2166312 33 +   2316924 ATGTATTAATACAAAAAACAATATCAGAAATGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2030652 33 -   3067355 ATGTATTAATACAAAAAACAATATCAGAAATGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171548842 33 - 171630274 ATATATTAATACAAGAAACAACATCAGAAATGT
i calJac3.chr4             I 2 C 0
e dasNov3.JH561790            181896 17 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I

a score=1484592.000000
s hg38.chr6_GL000254v2_alt    307087 218 +   4827813 CAGAGACCTGGATGAACTGATATCTATAAAAGTGATAAAATGAATCAATGTACTTCAGTAAGTTGGGTACATATTTAGACTTAT-AAATTATCAGCATCTATACCCAGGTATCGC-TTGAAAAATGTTACCAATTAATAATTAGCTTAATTTTTACAGCATGTTTG-AAAATTTGATATGCCATATCATTTTTATGCAACATACTTCAATAATACATGTCA
s panTro5.chr6              29282129 219 + 175400573 CAGAGACCTGGATGAACTGGTATCTATAAAAGTGATAAAATGAATCAATGTACTTCAGTAAGTTGGGTACATATTTAGACTTATTAAATTATCAGCATCTATACCCAGGTATTGC-TTGAAAAATGTTACCAATTAATAATTAGCTTAATTTTTACAGCATGTTTG-AAAATTTGATATGCCATATCATTTTTATGCAACATACTTCAATAATACATGTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29528318 219 + 173848474 CAGAGACCTGGATGAACTGGTATCTATAAAAGTGATAAAATGAATCAATGTACTTCAGTAAGTTGGGTACATATTTAGACTTATTAAATTATCAGCATCTATACCCAGGTATTGC-TTGAAAAATGTTACCAATTAATAATTAGCTTAATTTTTACAGCATGTTTG-AAAATTTGATATGCCATATCATTTTTATGCAACATACTTCAATAATACATGTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5325336 218 +   6154872 CAGAGACCTGGATGAACTGGTATCTATAAAAGTGATAAAATGAATCAATGTACTTCAGTAAGTTGGGTACATATTTAGACTTAT-AAATTATCAGCATCTATACCCAGGTATTGC-TTGAAAAATGTTACCAATTAATAATTAGCTTAATTTTTACAGCATGTTTG-AAAATTTGATATGCCATATCATTTTTATGCAACATACTTCAATAATACATGTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74338194 218 + 122973662 CAGAAACCTGGATGAACTGGTATCTATAAAAGTGATAAAATGAATCAATGTACTTCAGTAAGTTGGGTACATATTTAGACTTCT-AAATTATCAGCATCTATACCCAGGTATTGC-TTGAAAAATGTTACCAATTAATAATTAGCTTAATTTTTATAGCATGCTTG-AAAATTTGATATGCCATATCATGTTTATGCAACATACTTCAATAATACATGTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29494254 215 + 172585720 CAGAAACCTGGATGAACTGGTATCTATAAAAGTGATAATATGAATCAATGTACTTCAGTAAGTTGGATACATATTTAGAATTAT-AAATTATCAGCATCTATACCCAGGTATTGC-TTGAAAAAAGTTACCAACTAATAATTAGCTTAGTTTTT---ATGTGTTTG-AAAATTTGATATGCCATATCATTTTTATGCAACATACTTCTATAATACATGTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29155369 215 - 170955103 CAGAAACCTGGATGAACTGGTATCTATAAAAGTGATAATATGAATCAATGTACTTCAGTAAGTTGGATACATATTTAGAATTAT-AAATTATCAGCATCTATACCCAGGTATTGC-TTGAAAAAAGTTACCAACTAATAATTAGCTTAGTTTTT---ATGTGTTTG-AAAATTTGATATGCCATATCATTTTTATGCAACATACTTCTATAATACATGTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2147688 215 -   2996164 CAGAAACCTGGATGAACTGGTATCTATAAAAGTGATAAAATGAATCAATGTACTTCAGTAAGTTGGGTACATATTTAGAATTAT-AAATTATCAGCATCTATACCCAGGTATTGC-TTGAAAAAAGTTACCAACTAATAATTAGCTTAGTTTTT---ATGTGTTTG-AAAATTTGATATGCCATATCATTTTTATGCAACATACTTCTATAATACATGTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2028473 215 -   2157725 CAGAAACCTGGATGAACTGGTATCTATAAAAGTGATAAAGTGAATCAATGTACTTCAGTAAGTTGGGTACATGTTTAGAATTAT-AAATGATCAGCATCTATACCCAGATATTGC-TTGAAAAAAGTTACCAACTAATAATTAGCTTAGTTTTT---ATGTGTTTG-AAAATTTGATATGCCATATCATTTTTATGCAACATACTTCTATAATACATGTCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28458566 215 -  71996105 CAGAACCCTGGATGAACTGGTATCTATAAAAGTGATAAAATGAATCAATGTACTTCAGTAAGTTGGGTACATATTTAGAATTAT-AAATTATCAGCATCTATACCCAGGTATTGC-TTGAAAAAAGTTACCAACTAATAATTAGCTTAGTTTTT---ATGTGTTTG-AAAATTTGATATGCCATATCATTTTTATGCAACATACTTCTATAATACATGTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2166345 215 +   2316924 CAGAAACCTGGATGAACTGGTATCTATAAAAGTGATAAAGTGAATCAATGTACTTCAGTAAGTTGGGTACATGTTTAGAATTAT-AAATGATCAGCATCTATACCCAGATATTGC-TTGAAAAAAGTTACCAACTAATAATTAGCTTAGTTTTT---ATGTGTTTG-AAAATTTGATATGCCATATCATTTTTATGCAACATACTTCTATAATACATGTCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2030685 218 -   3067355 CAGAAACCTGGATGAACTGGTATCTATAAAAGTGATAAAATGAATCAATGTACTTCAGTAAGTTGGGTACATATTTAGAATTAA-AAATTATCAGCATCTATACCCAGGTATTGC-TTGAAAAAAGTTACCAACTAATAATTAGCTTAGTTTTTATAATGTGTTTG-AAAATTTGATATGCCATATCATTTTTATGCAACATACTTCAATAATACATGTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171548875 211 - 171630274 CAGAAATCTGAATGAATTGGTATCTATAAATGCAACAAAATGAAACAATATACTTTAGTAAGTTGGGTACATATTTAGACTTAT-CAATTATCAGCACCCATACCCAGGTATTGC-TTGAAACAAGTTGCCAACTGATAATTAGCTAAATTTATATAATGTGTTTG-AAAA--CGATATGTCATATTAT-TTTATGCAACATACTTCAGTA----ATGTCA
i calJac3.chr4             C 0 C 0
s dasNov3.JH561790            181913 219 -    302817 CAGCAGCCTGGGTGAACTGGGGTCTTGAAAGGTTTTATAATGAGTCACTGTATTGTGGTAATGTGGGTACATATTTAGATCTGT-AAGCTCAAAGAATATTTAACCTGCTACTGCTTTGAAAACAGGTGCCAAAAAGCACTTAGCTAAATTTTTATAATGGCATTGTAATATTTGATATGCTGTGTTGT-TGGATGCAACGTGCCTCTAAAATACATGCCA
i dasNov3.JH561790         I 17 I 8519
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I

a score=1135642.000000
s hg38.chr6_GL000254v2_alt    307305 194 +   4827813 GTAAATTTATTTAAGATATAAATATTCATTGTGAAGTA-----------------GGTAAATGTATGTACTTGCAAAGATACCCAAACACATCAATTAAAATAATGGGATTAGAATTGGATAATAAGTGCATATATATGTATTTGACCTCTAGAGGTTCCTGTACTTCAAAATTCATCACTATATGACAATTGAGTATCATAGCATCTTCT
s panTro5.chr6              29282348 193 + 175400573 GTAAATTTATTTAAGATATAAATATTCATTGTAAAGTA-----------------GGTAAATATATGTACTTGCAAAGATACCCAAACACATCAATTAAAATAATGGGATTAGAATTGGATAATAAGTGCATA-ATACGTATTTGACCTCTAGAGGTTCCTGTACTTCAAAATTCATCCCTATATGACAATTGAGTATCATAGCATCTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29528537 194 + 173848474 GTAAATTTATTTAAGATATAAATATTCATTGTAAAGTA-----------------GGTAAATATATGTACTTGCAAAGATACCCAAACACATCAATTAAAATAATGGGATTAGAATTGGATAATAAGTGCATTTATACGTATTTGACCTCTAGAGGTTCCTGTACTTCAGAATTCATCACTATATGACAATTGAGTATCATAGCATCTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5325554 194 +   6154872 GTAAATTTATTTAAGATATAAATATTCATTGTAAAGTA-----------------GGTAAATGTATGTACTTGCAAAGATACCCAAACACATCAATTAAAATAATGGGATTAGAATTGGATAATAAGTGCATATATACATATTTGACCTCTAGAGGTTCCTGTACTTCAAAATTCATCACTATATGACAATTGAGTATCATAGCATCTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74338412 194 + 122973662 GTAAATTTCTAAAAAATATAAATATTCATTGTAAAGTA-----------------GGTAAATGTATGTACTTGCAAAGATACCCAAACACATCAATTAAAATAATAGGATTAGAATTGGATAATAAGTGCATATATATGTATTTGACCTCTAGAGGTTCCTGTACTTCAAAATTCATCACTATATGACAATTGAGTATCATAGCATCTTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29494469 189 + 172585720 ATACATTTCTTAAAAAT----ATATTCATTGTAAAGTA-----------------GGTAAAT-TATGTACTTGCAAAGATACCCAAACACATCAATTAAAATTATGGGATTAGAATTAGATAATATGTGTATGTGTATGTATTTGACCTCTAGTAGTTCCTGTACTTTAAAATTCATCATTATATGACAATTGCGTATCATAGCATCTTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29155584 189 - 170955103 ATACATTTCTTAAAAAT----ATATTCATTGTAAAGTA-----------------GGTAAAT-TATGTACTTGCAAAGATACCCAAACACATCAATTAAAATTATGGGATTAGAATTAGATAATATGTGTATGTGTATGCATTTGACCTCTAGTAGTTCCTGTACTTTAAAATTCATCATTATATGACAATTGCGTATCATAGCATCTTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2147903 189 -   2996164 ATACATTTCTTAAAAAT----ATATTCATTGTAAAGTA-----------------GGTAAAT-TATGTACTTGCAAAGATACCCAAACACATCAATTAAAATTATGGGATTAGAATTAGATAATATGTGCGTGTGTATGTATTTGACCTCTAGTAGTTCCTGTACTTTAAAATTCGTCACTATATGACAATTGTGTATCATAGCATCTTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2028688 190 -   2157725 ATACATTTCTTAAAAAT----ATATTCATTGTAAAGTA-----------------GGTAAATATATGTACTTACAAAGATACTCAAACACATCAATTAAAATTATGGGATTAGAATTAGATAATATGTGCGTGTGTATGTATTTGACCTCTAGTACTTCCTGTACCTTAAAATTCATCACTATATGACAATTGCGTATCATAGCAGCTTCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28458781 189 -  71996105 ATACATTTCTTAAAAAT----ATATTCATTGTAAAGTA-----------------GGTAAAT-TATGTACTTGCAAAGATACCCAAACACATCAATTAAAATTATGGGATTAGAATTAGATAATATATGCGTGTGTATGTATTTGACCTCTAGTAGTTCCTGTACTTTAAAATTCATCACTATATGACAATTGCGTATCATAGCATCTTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2166560 190 +   2316924 ATACATTTCTTAAAAAT----ATATTCATTGTAAAGTA-----------------GGTAAATATATGTACTTGCAAAGATACTCAAACACATCAATTAAAATTATGGGATTAGAATTAGATAATATGTGCATGTGTATGTATTTGACCTCTAGTACTTCCTGTACCTTAAAATTCATCACTATATGACAATTGCGTATCATAGCAGCTTCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2030903 207 -   3067355 ATACATTTCTTAAAAAT----ATATTCATGGTAAAGTACGTATAAATACATTCATGGTAAATGTATGTACTTGCAAAGATACCCAAACACATCAATTAAAATTATGGGATTAGAATTAGATAATATGTGCGTGTGTATGTATTTGACCTCTAGTAGTTTCTGTACTTTAAAATTCATCACTATATGACAATTACGTATCATAGCATCTTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171549086 191 - 171630274 GCAAATTTCTTAAAAATATTAATATTCATTGTTAAGTA-----------------GGTAAATGTATGTACTTGCAAAGATACCAAAATACATCAATTAAAATAATTGGATTAGAATTGGATAA---GTGTGTATATATGTAGTTGAACTCTAGTAGTAGCTGTACTTTAAAATTCCTCACTTTATGACAATTAAGTATCATAGCATCTTCA
i calJac3.chr4             C 0 I 527
e dasNov3.JH561790            182132 8519 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I

a score=5040066.000000
s hg38.chr6_GL000254v2_alt    307499 767 +   4827813 GCTTGAATCCATTT---ATAAGTTTTTGTTTAAGAAGTGAGAGAAAATTAATAATTGTTATGAATATAAACAGATACAGTAAAAAT-GGCATTTCATTTTCTCTAGATATTCATGATTCTCTGAATTTGAATAATGTATTTTTTAGATTATAGTCTTCTAAAGAAGAGAAATATTG-AAAGAATTAGCTATTTACTTGCACTGAGGGGAGTCATTATGTGCATTTTCTACTATGGTTTTCTTAGTCCACCACTCCTCAAGTTATGATGGTTGACTC----AGAAGGGTTGCTTTTATCTTTAATCATAAATCATTATGAATTTCCTTGTCTGAACTAGTCAACATCTACCATGTTGTGGTTAATTGGTACCAATCAGAGTTGAACTTCTTGTGGAAGAATCTGGAGATGTCCATATGAAAGG-------AAAATAGGCAGTAAACTAGATTGTATTATATTGCA-TTTTTCCAACACTAGGCATATGTGGTTTTGAAAATTACCTATTTACTGAGTGTTTTGTGAGTGGCAGAAACATTTTCCTGCCCTGGCCAAGGGCTAACCTTA---GAAAAAGATAAATGTGATGGG------------------TATAAAATCTAAGAGAGCTGACTT-AGTTTCAGGATATTGTTAAGCCCTTTGAGACTGGTGCTCCACAACAGTAATTAAGCATAATTATGATGCAGGTCAAGGTAAGACATTTCTGAAATTTTCTAGGACATG-TT-TTTGAAGGCTTGGGATATTCTGCTTAGCTCATATTTGTGTATT-TTTTT-TTTAGTTAAAAATG
s panTro5.chr6              29282541 765 + 175400573 GCTTGAATCCGTTT---ATAAGTTTTTGTTTAAGAAGTGAGAGAAAATTAATAATTGTTATGAATATAAACAGTTACAGTAAAAAT-GGCATTTCATTTTCTCTAGATATTCGTGATTCTCTGAATTTGAATAATGTATTTTTTAGATTATAGTCTTCTAAAGAAGAGAAATATTG-AAAGAATTAGCTATTTACTTGCACTGAGGGGAGTCATTATGTCCATTTTCTACTATGGTTTTCTTAGTCCACCACTCCTCAAGTTATGATGGTTGACTC----AGAAGGGTTGCTTTTATCTTTAATCATAAATCATTATGAATTTCCTTGTCTGAACTAGTCAACATCTACCATGTTGTGGTTAATTGGTACCAATCAGAGTTGAACTTCTTGTGGAAGAATCTGGAGATGTCCATATGAAAGG-------AAAATAGGCAATAAACTAGATTGTATTATATTGCA-TTTTTCCGACACTAGGCATATGTGGTTTTGAAAATTACCTTTTTACTGGGTGTTTTGTGAGTGGCAGAAACATTTTCCTGCCCTGGCCAAGGGCTAACCTTA---GAAAAAGATAAATGTGATGGG------------------TATAAAATCTAAGAGAGCTGACTT-AGTTTCAGGATATTGTTAAGCCCTTTGAGACTGGTGCTCCACAACAGTAATTAAGCATCATTATGATGCAGGTCAAGGTAAGACATTTCCGAAATTTTCTAGGACATG-TT-TTTGAAGGCTTGGGATATTCTGCTTAGCTCATATTTATGTATT-TTTTT-T--AGTTAAAAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29528731 766 + 173848474 GCTTGAATCCATTT---ATAAGTTTTTGTTTAAGAAGTGAGAGAAAATTAATAATTGTTATGAATATAAACAGTTACAGTAAAAAT-GGCATTTCATTTTCTCTAGATATTCGTGATTCTCTGAATTTGAATAATGTATTTTTTAGATTATAGTCTTCTAAAGAAGAGAAATATTG-AAAGAATTAGCTATTTACTTGCACTGAGGGGAGTCATTATGTCCATTTTCTACTATGGTTTTCTTAGTCCACCACTCCTCAAGTTATGATGGTTGACTC----AGAAGGGTTGCTTTTATCTTTAATCATAAATCATTATGAATTTCCTTGTCTGAACTAGTCAACATCTACCATGTTGTGGTTAATTGGTACCAATCAGAGTTGAACTTCTTGTGGAAGAATCTGGAGATGTCCATATGAAAGG-------AAAATAGGCAATAAACTAGATTGTATTATATTGCA-TTTTTCCGACACTAGGCATATGTGGTTTTGAAAATTACCTTTTTACTGGGTGTTTTGTGAGTGGCAGAAACATTTTCCTGCCCTGGCCAAGGGCTAACCTTA---GAAAAAGATAAATGTGATGGG------------------TATAAAATCTAAGAGAGCTGACTT-AGTTTCAGGATATTGTTAAGCCCTTTGAGACTGGTGCTCCACAACAGTAATTAAGCATCATTATGATGCAGGTCAAGGTAAGACATTTCCGAAATTTTCTAGGACGTG-TT-TTTGAAGGCTTGGGATATTCTGCTTAGCTCATATTTATGTATT-TTTTT-T-TAGTTAAAAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5325748 769 +   6154872 GCTTGAATCCATTTATGATAAGTTTTTGTTTAAGAAGTGAGAGAAAATTAATAATTGTTATGAATATAAACAGTTACAGTAAAAAT-GGCATTTCATTTTCTCTAGATATTCATGATTCTCTGAATTTGAATAATGTATTTTTTAGATTATAGTCTTCTAAAGAAGAGAAATATTG-AAAGAATTAGCTATTTACTTGCACTGAGGGGAGTCATTGTGTCCATTTTCTACTATGATTTTCTTAGTCCACCACTCCTCGAGTTATGATGGTTGACTCAGTTAGAAGGGTTGCTTTTATCTTTAATCATAAATCATTATGAATTTCCTTGTCTGAACTAGTCAACATCTACCATGTTGTGGTTAATTGGTACCAATCAGAGTTGAA---CTTGTGGAAGAATCTGGAGATGTCCATATGAAAGG-------AAAATAGGCAATAAACTAGATTGTATTATATTGCA-TTTTTCCGACACTAGGCATATGTGGTTTTGAAAATTACCTTTTTACTGGGTGTTTTGTGAGTGGCAGAAACATTTTCCCGCCCTGGCCAAGGGCTAACCTTA---GAAAAAGATAAATGTGATGGG------------------TATAAAATCTAAGAGAGCTGACTT-AGTTTCTGGATATTGTTAAGCCCTTTGAGACTGGTGCTCCACAACAGTAATTAAGCATCATTATGATGCAGGTCAAGGTAAGACATTTCTGAAATTTTCTAGGACATG-TT-TTTGAAGGCTTGGGATATTCTGCTTAGCTCATATTTATGTTTT-TTTTT-T--AGTTAAAAATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74338606 787 + 122973662 GCTTGAATCCATTTATGATAACTTTTTGTTTAAGAAGTGAGAGAAAATTAATAATTATTATG----TAAACAGTTACAGTAAAAAT-GGCATTTCATTTTCTCTAGATAGTCGTGATTCTCTGAATTTGAATAATGTATTTTTTAGATTATAGTCTTCTAAAGAAGAGAAATACTG-AAGGAATTAGCTATTTACTTGCACTGAGGGGAGTCATTATGTCCATTTTCTACTATGGTTTTCTTAGTCCACCACTCCTCAAGTTATGATGGTTGACTCAGTTAGAAGGATTGCTTTTATCTTTAATCATAAATCATTATGAATTTCCTTGTCTGAGCTAGTCAACATCTACCATGTTGTGGTTAATTGGGACCAATCAGAGTTGAACTTCTTGTGGAAGAATCTGGAGATGTCCATATGAAAGG-------AAAATAGGCAATAAACTAGACTGTATTATATTGCATTTTTTCCGACACTAGGCATATGTGGTTTTGAAAATTACCTTTTTACTGGGTGTTTTGTGAGTGGCAGAAACATTTTCCTGTTCTGGCCAAGGGCTAACCTTA---GAAAAAGATAAATGTGATGGGTAACAGATGATTTATGGATATAAAATCTAAGAGAGCTGACTT-AGTTTCTGCATATTGTTAAACCCTTTGAGACTGGTGCTCCACAACAGTAATTAAGCGTTATTATGATGCAGGTCAAGGTAAGACA-TTCCGAAATTTTCTAGGACATG-TT-TTTGAAGGCTTGGGATATTCTGCTTAGCTCATATTTATGTGTT-GTTTT-T-TAGTTAAACATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29494658 790 + 172585720 GCTTGAACCCATTTATGATAGGTTTTTGTTTAAGAAGTGAGAGAAAATTAAGAACTGTTATGAATGTAAACAGTTATAGTAAAAAT-GGCATTTCATTTTCTCAAGATATTTGTGATTCTCTGAATTTGAATAATGTATTTTTTAGATTATAGTCTTCTAAAGAAGAGAAGTATTG-AAAGAATTAGCCATTTACTTGCACTGAGGGGAGTCATTATGTCCATTTTCTGCTATGGTTTCCTTAGTCCACCACTCCTCAAGTTGTGATGGTTGACTCAGTTAGAAGGGTTGCTTTTATCTTTAATCATAAATCATTATGAATTTCCTTGTCTGAACCAGTCAGTATCTACCACGTTGTGGTTAATTGGGACCAATCAGAGTGGAACTTCTTGTGGAAGAATCTGGAGATGTCCATATGAAAAA-------GAAATATGCAATAAACTTGATTGTATTATATTGCA-TTTTTCTGACACTAGGCATATGTGGTTTTGAAAATTACCTTTTTACTGGGCATTTTGTGAGTGGCAGAAACATTTTCCTGCCTTGGCCAAGGGCTAACCTTA---GAAAAAGATAAATGTGATAAGTAAGAGATGATTTATGGATATAATATCTAAGAGAGCTGACTT-AGTTGCTGAATGTTGTTAAACCCTTTGAGACTGGTGCTCCACCACAGTAATTAAGCATCATTATGATGCAGGTCAAGGTAAGACA-TTCCGAAATTTTCTAGGACATG-TT-TTTGAAGGCTTGGGATATTCTGCTTAACTCATATTTTTGCATT-GTTTT-T-TAGTTAAAAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29155773 790 - 170955103 GCTTGAACCCATTTATGATAGGTTTTTGTTTAAGAAGTGAGAGAAAATTAAGAACTGTTATGAATGTAAACAGTTATAGTAAAAAT-GGCATTTCATTTTCTCAAGATATTTGTGATTCTCTGAATTTGAATAATGTATTTTTTAGATTATAGTCTTCTAAAGAAGAGAAGTATTG-AAAGAATTAGCCATTTACTTGCACTGAGGGGAGTCATTATGTCCATTTTCTGCTATGGTTTCCTTAGTCCACCACTCCTCAAGTTGTGATGGTTGACTCAGTTAGAAGGGTTGCTTTTATCTTTAATCATAAATCATTATGAATTTCCTTGTCTGAACCAGTCAGTATCTACCACGTTGTGGTTAATTGGGACCAATCAGAGTGGAACTTCTTGTGGAAGAATCTGGAGATGTCCATATGAAAAA-------GAAATATGCAATAAACTTGATTGTATTATATTGCA-TTTTTCCGACACTAGGCATATGTGGTTTTGAAAATTACCTTTTTACTGGGCATTTTGTGAGTGGCAGAAACATTTTCCTGCCTTGGCCAAGGGCTAACCTTA---GAAAAAGATAAATGTGATAAGTAAGAGATGATTTATGGATATAATATCTAAGAGAGCTGACTT-AGTTGCTGAATGTTGTTAAACCCTTTGAGACTGGTGCTCCACCACAGTAATTAAGCATCATTATGATGCAGGTCAAGGTAAGACA-TTCCGAAATTTTCTAGGACATG-TT-TTTGAAGGCTTGGGATATTCTGCTTAACTCATATTTTTGCATT-GTTTT-T-TAGTTAAAAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2148092 796 -   2996164 ACTTGAACCCATTTATGATAGGTTTTTGTTTAAGAAGTGAGAGAAAATTAAGAACTGTTATGAATGTAAACAGTTATAGTAAAAAT-GGCATTTCATTTTCTCAAGATATTTGTGATTCTCTGAATTTGAATAATGTATTTTTTAGATTATAGTCTTCTAAAGAAGAGAAGTATTG-AAAGAATTAGCCATTTACTTGCACTGAGGGGAGTCATTATGTCCATTTTCTGCTATGGTTTCCTTAGTCCACCACTCCTCAAGTTGTGATGGTTGACTCAGTTAGAAGGGTTGCTTTTATCTTTAATCATAAATCATTATGAATTTCCTTGTCTGAACCAGTCAGTATCTACCACGTTGTGGTTAATTGGGACCAATCAGAGTGGAACTTCTTGTGGAAGAATCTGGAGATGTCCATATGAAAAA-------GAAATATGCAATAAATTTGATTGTATTATATTGCA-TTTTTCCGACACTAGGCATATGTGGTTTTGAAAATTACCTTTTTACTGGGCATTTTGTGAGTGGCAGAAACATTTTCCTGCCTTGGCCAAGGGCTAACCTTAAAGAAAAAAAATAAATGTGATAAGTAAGAGATGATTTATGGATATAATATCTAAGAGAGCTGACTTAAGTTGCTGAATGTTGTTAAACCCTTTGAGACTGGTGCTCCACCACAGTAATTAAGCATCATTATGATGCAGGTCAAGGTAAGACA-TTCCGAAATTTTCTAGGACATGTTT-TTTGAAGGCTTGGGATATTCTGCTTAACTCATATTTTTGCATTGGTTTT-T-TAGTTAAAAATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2028878 790 -   2157725 ACTTGAACCCATTTATGATAGATTTTTGTTTAAGAAGTGAGAGAAAATTAAGAACTGTTATGAATGTAAACAGTTATAGTAAAAAT-GGCATTTCATTTTCTCAAGATATTTGTGATTCTCTGAATTTGAATAATGTATTTTTTAGATTACAGTCTTCTAAAGAAGAGAAGTATTG-AAAGAATTAGCCATTTACTTGCACTGAGGGGAGTCATTATGTCCATTTTCTGCTATGGTTTCCTTAGTCCACCACTCCCCAAGTTGTGATGGTTGACTCAGTTAGAAGGGTTACTTTTATCTTTAATCATAAATCATTATGAATTTCCATGTCTGAACCAGTCAGTATCTACCACGTTGTGATTAATTGGGACCAATCAGCGTGGAACTTCTTGTGGAAGAATCTGGAGATGTCCATATGAAAAG-------GAAATATGCAATAAACTTGATTGTATTATATTGCA-TTTTTCGGACACTAGGCATATGTGGTTTTGAAAATTACCTTTTTACTGGGCATTTTGTGAGTGGCAGAAACATTTTCCTGCCCTGGCAAAGGGCTAACCTTA---GAAAAAGATAAATGTGATAAGTAAGAGATGATTTATGGATATAATATCTAAGAGAGCTGACTT-AGTTTCTGAATGTTGTTAAACGCTTTGAGACTGGTGCTCCACCACAGTAATTAAGCATCATTATGATGCAGGTCAAGGTAAGACA-TTCTGAAATTTTCTAGGACATG-TT-TTTGAAGGCTTGGGATATTCTGCTTAACTCATATTTTTGTATT-GTTTT-T-TAGTTAAAAATG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28458970 792 -  71996105 ACTTGAACCCATTTATGATAGGTTTTTGTTTAAGAAGTGAGAGAAAATTAAGAACTGTTATGAATGTAAACAGTTATAGTAAAAATGGGCATTTCATTTTCTCAAGATATTTGTGATTCTCTGAATTTGAATAATGTATTTTTTAGATTATAGTCTTCTAAAGAAGAGAAGTATTGAAAAGAATTAGCCATTTACTTGCACTGAGGGGAGTCATTATGTCCATTTTCTGCTATGGTTTCCTTAGTCCACCACTCCTCAAGTTGTGATGGTTGACTAAGTTAGAAGGGTTGCTTTTATCTTTAATCATAAATCATTATGAATTTCCTTGTCTGAACCAGTCAGTATCTACCACGTTGTGGTTAATTGGGACCAATCAGAGTGGAACTTCTTGTGGAAGAATCTGGAGATGTCCATATGAAAAA-------GAAATATGCAATAAACTTGATTGTATTATATTGCA-TTTTTCCGACACTAGGCATATGTGGTTTTGAAAATTACCTTTTTACTGGGCATTTTGTGAGTGGCAGAAACATTTTTCTGCCTTGGCCAAGGGCTAACCTTA---GAAAAAGATAAATGTGATAAGTAAGAGATGATTTATGGATATAATATCTAAGAGAGCTGACTT-AGTTTCTGAATGTTGTTAAACCCTTTGAGACTGGTGCTCCACCACAGTAATTAAGCATCATTATGATGCAGGTGAAGGTAAGACA-TTCCGAAATTTTCTAGGACGTG-TT-TTTGAAGGCTTGGGATATTCTGCTTAACTCATATTTTTGTATT-GTTTT-T-TAGTTAAAAATG
i chlSab2.chr17            C 0 I 111
s manLeu1.NW_012104165v1     2166750 790 +   2316924 ACTTGAACCCATTTATGATAGATTTTTGTTTAAGAAGTGAGAGAAAATTAAGAACTGTTATGAATGTAAACAGTTATAGTAAAAAT-GGCATTTCATTTTCTCAAGATATTTGTGATTCTCTGAATTTGAATAATGTATTTTTTAGATTACAGTCTTCTAAAGAAGAGAAGTATTG-AAAGAATTAGCCATTTACTTGCACTGAGGGGAGTCATTATGTCCATTTTCTGCTATGGTTTCCTTAGTCCACCACTCCCCAAGTTGTGATGGTTGACTCAGTTAGAAGGGTTACTTTTATCTTTAATCATAAATCATTATGAATTTCCATGTCTGAACCAGTCAGTATCTACCACGTTGTGATTAATTGGGACCAATCAGAGTGGAACTTCTTGTGGAAGAATCTGGAGATGTCCATATGAAAAG-------GAAATATGCAATAAACTTGATTGTATTATATTGCA-TTTTTCCGACACTAGGCATATGTGGTTTTGAAAATTACCTTTTTACTGGGCATTTTGTGAGTGGCAGAAACATTTTCCTGCCCTGGCAAAGGGCTAACCTTA---GAAAAAGATAAATGTGATAAGTAAGAGATGATTTATGGATATAATATCTAAGAGAGCTGACTT-AGTTTCTGAATGTTGTTAAACGCTTTGAGACTGGTGCTCCACCACAGTAATTAAGCATCATTATGATGCAGGTCAAGGTAAGACA-TTCTGAAATTTTCTAGGACATG-TT-TTTGAAGGCTTGGGATATTCTGCTTAACTCATATTTTTGTATT-GTTTT-T-TAGTTAAAAATG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2031110 790 -   3067355 ACTTGAACCCATTTATGATAGGTTTTTGTTTAAGAAGTGAGAGAAAATTAAGAACTGTTATGAATGTAAACAGTTATAGTAAAAAT-GGCATTTCATTTTCTGAAGATATTTGTGATTCTCTGAATTTGAATAATGTATTTTTTAGATTATAGTCTTCTAAAGAAGAGAAGCATTG-AAAGAATTAGCCATTTGCTTGCACTGAGGGGAGTCATTACGTCCATTTTCTGCTATGGTTTCCTTAGTCTACCACTCCTCAAGTTGTGATGGCTGACTCAGTTAGAAGGGTAGCTTTTATCTTTAATCATAAATCATTATGAATTTCCTTGTCTGAACCAGTCAGTATCTACCACATTGTGGTTAATTGGGACCAATCAGAGTGGAACTTCTTGTGGAAGAATGTGGAGATGTCCATATGAAAAG-------GAAATATGCAATAAACTTGATTGTATTATATTGCA-TTTTTCTGACACTAGGCATATGTGGTTTTGAAAATTACCTTTTTACTGGGCATTTTGTGAGTGGCAGAAACATTTTCCTGCCCTGGCCAAGGGCTAACCTTA---GAAAAAGATAAATGTGATAAGTAAGAGATGATTTATGGATATAATATCTAAGAGAGCTGACTT-AGTTTCTGAATATTGTTAAACCCTTTGAGACTGGTTCTCCACCACAGTAGTTAAGCATCATTATGATGCAGGTCAAGGTAAGACA-TTCCAAAATTTTCTAGGACATG-TT-TTTGAAGGCTTGGGATATTCTGCTTAACTCATATTTTTGTATT-GTTTT-T-TAGTTAAAAATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171549804 791 - 171630274 ATTTGAACTCCTTTATGATAGGTTTTTATTGAAGAAGTGAGACAAAATTAAGAATAGCTATGAATGTAACCAGTTATGGTAAAAAT-GGCATTTCGTTTTCTCTAGATGATTGTGATTCTCTGAATTTGAATAATGTACTTTTTAGATGATAGTCTTCTAAAGAAGAGAAATATTG-AAAGAATTAGCCATTTACTTGCACGGAGAGGAGTCATTATGTCTGTTTTCCACTATGGTTTTCTTAG--------TCCTCAAGTTATGATGGCTGACTTAGTTAGGAGGGTTGCTTTTATCTTTAATCATAAGTTATTATGAATTTACTTGTCTGAACTAATCAGTATCTACCATCCTGTGGTTAATTGGGACCAATCAGAGTTGAACTTCTTGTGGAAGAATCTGGAGATGTCCATATGAAAGGGAAATATGAAATATGCAATAAACTTTATTGTATGACATTGCA-TTCTTCCCATACTAGGCATATGTGGTTTTGAAAATTACCTTTTTACTGGGCATTTTGTGAGTGGCAGAAACATTTTCCTGCCCTGGCCAAGGACTAGCCTTA---GGAAAAGATAAATGTGATTAGTAAGAGATGATTTATGGATATAATATCTAAGAGAGCTGACTT-AGTTTCTGGATACTGTTAAACCCTTTGAGAGTGGTGCTTCACAACAGTAATTAAGCATCAATATGATGCAGGTCAAGGTAAGAAA-TTTGGAAATTTTCTAGGACATG-TTATCTGAAGGTTTGGGATATTCTGCTTAACTCATATTTATGTTTT-TTTTTGT-TTGTTTAAAATG
i calJac3.chr4             I 527 C 0
e dasNov3.JH561790            182132 8519 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I

a score=3828286.000000
s hg38.chr6_GL000254v2_alt    308266 593 +   4827813 ATAACAAGATGATTTTTGCTCTGTTTACAAACATTTGCATGAACACTGAAAAATTCATCCAAATCGTTAAAAATATTCAATGCCTACTAAGAGTCATGGAACCCTATTATATGATGGTGAATCGAGAAAGAACTATAC-AAAATTATGCTTTCAAGAAACTTATAATTACATTGGCTAGAGGCTTATCAGTTCTATAAATAATATTTACAAAACAATGCAATTCTAACCTTCATAGAGATTTGTATGGCTTGTTAAGAGAACCATAGTC-TAAGAcaatgggcttcagc-aggggggcacactctgggatgcagagacttttgtagggttataaagttagttttaaggaaat-aacttccagatcctccttgttcctttgttttcttcgctaacattttcttgaggaaatgccaggttgaggagttagacaggttctctttccagccttcactttcaaagatcccttctcctccttcacaaaagaaaggcataattaccatctctactgatcttactgtaacatatcatccacattgtgaaaaccagtggtacaccaaagaaagggacaactcaaaatgctagtggtgTGCTGCTCA
s panTro5.chr6              29283306 593 + 175400573 ATAACAAGATGATTTTTGCTCTGTTTACAAACATTTGCATGAACACTGAAAAATTCATCCAAATCGTTAAAAATATTCAATGCCTACTAAGAGTCATGGAACCCTATTATATGATGGTGAATCGAGAAAGAACTATAC-AAAATTATGCTTTCAAGAAACTTATAATTACATTGGCTAGAGGCTTATCAGTTCTATAAATAATATTTACAAAACAATGCAATTCTAACCTTCATAGAGATTTGTATGGCTTGTTAAGAGAACCATAGTC-TAAGAcaatgggcttcaac-gggggggcacactctgggatgcagagacttttgtagggttataaagttagttttaaggaaat-aacttccagatcctccttgttcctttgttttcttcgctaacattttcttgaggaaatgccaggttgaggagttagacaggttctctttccagccttcactttcaaagatcccttctcctccttcacaaaagaaaggcataattaccatctctactgatcttactgtaacatatcatccacattgtgaaaaccagtggtacaccaaagaaagggaaaactcaaaatgctggtggtgggCTGCTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29529497 593 + 173848474 ATAACAAGATGATTTTTGCTCTGTTTACAAACATTTGCATGAACACTGAAAAATTCATCCAAATCGTTAAAAATATTCAATGCCTACTAAGAGTCATGGAACCCTATTATATGATGGTGAATCGAGAAAGAACTATAC-AAAATTATGCTTTCAAGAAACTTATAATTACATTGGCTAGAGGCTTATCAGTTCTATAAATAATATTTACAAAACAATGCAATTCTAACCTTCATAGAGATTTGTATGGCTTGTTAAGAGAACCATAGTC-TAACAcaatgggcttcaac-gggggggcacactctgggatgcagagacttttgtagggttataaagttagttttaaggaaat-aacttccagatcctccttgttcctttgttttcttcgctaacattttcttgaggaaatgccaggttgaggagttagacaggttctctttccagccttcactttcaaagatcccttctcctccttcacaaaagaaaggcataattaccatctctactgatcttactgtaacatgtcatccacattgtgaaaaccagtggtacaccaaagaaagggacaactcaaaatgctggtggtgggCTGCTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5326517 595 +   6154872 ATAACAAGATGATTTTTGCTCTGTTTACAAACATTTGCATGAACACTGAAAAATTCATCCAAATCGTTAAAAATATTCAATGCCTACTAAGAGTCATGGAACCCTATTATATGATGGTGAATCGAGAAAGAACTATACAAAAATTATGCTTTCAAGAAACTTATAATTACATTGGCTAGAGGCTTATCAGTTCTATAAATAATATTTACAAAACAATGCAATTCTAACCTTCATAGAGATTTGTATGGCTTGTTAAGAGAACCATAGTCTTAAGAcaatgggcttcaacggggggggcacactctgggatgcagagacttttgtagggctataaagttagttttaaggaaat-aacttccagatcctccttgttcctttgttttcttcgctaacattttcttgaggaaatgccaggttgaggagttagacagattctctttccagccttcactttcaaagatcccttctcctccttcacaaaagaaaggcataattaccatctctactgatcttactgtaacatatcatccacattgtgaaaaccag-ggtacaccaaagaaagggacaactcaaaatgctggtggtgggCTGCTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74339393 590 + 122973662 ATAACAAGATGATTTTTCCTCTGTTTACAAACATTTGAATGAACACTGAAAAATTCATCCAAATCGTTAAAAATATTCAATGCCTACTAAGAGTCATGGAACCCTATTATATGATGGTGAATCGAGAAAGAACTATAC-AAAATTATGCTTTCAAGAAACTTATAATTACATTGGCTAGAGGCTTATCAGTTCTATAAATTATATTTACTAAACAATGCAATTCTAACCTTCATAGAGATTTGCATGGCTTCTTAAGAGAACCATAGTC-TAAGAcaatgggcttcaat-ggggggacacattctgggatgcagagacttctgtagggttataaagttagttttaaggaaat-aacttccagatcctccttgttcctttgttttcttccctaacattttcttgaggaaatgccaggttgaggagttagataggttctctttccagccttcactttcaaaaatcccctctcctccttcacaaaagaaaggcataattaccatctctactgatcttactgtaacat---atccacgttgtgaaaaccagtggtacaccaaagaaagggacaactcaaaatgctggtgctgggCTGCTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29495448 588 + 172585720 ATAACAAGATGATTTTTGCTCTGTTTACAAACATTTGAATGAACACTGAAAAATTCATCCAAATTGTTAGAAAtattcagtgcctactaagagtcatggaaccctattatatgatggtgaatcgagaaagagctatac-aaaattttgctttcaaggaacttataattacattggctagaggcttatcagttctataaataatggttacaaaacaatgcaaTTTGAACCTTTATAGAGATTTGCATGGCTTGTTAAGAGAACCATAGTC-TAAGAcaatgggcctcaac-agggggatacactctgggatgcagagacttttgtagggttataaagttagttttaaggaaataaacttctagatcctccttgtccctttgttttcttccctagtattttcttgaggaaatgtcaggttgaggggttagacaggttctctttccagccttcactttgaaagatcccctctcctccttcacaaaagaaaggcgtaattcccatctctactgatctt------acatatcgttgacgttgtgaaaaccagtggtaccccaaagaaagggacaactcaaaattctggtgctgTGCTCCTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29156563 588 - 170955103 ATAACAAGATGATTTTTGCTCTGTTTACAAACATTTGAATGAACACTGAAAAATTCATCCAAATTGTTAGAAATATTCAGTGCCTACTAAGAGTCATGGAACCCTATTATATGATGGTGAATCGAGAAAGAGCTATAC-AAAATTTTGCTTTCAAGGAACTTATAATTACATTGGCTAGAGGCTTATCAGTTCTATAAATAATGGTTACAAAACAATGCAATTTGAACCTTTATAGAGATTTGCATGGCTTGTTAAGAGAACCATAGTC-TAAGAcaatgggcctcaac-agggggatacactctgggatgcagagacttttgtagggttataaagttagttttaaggaaataaacttctagatcctccttgtccctttgttttcttccctagtattttcttgaggaaatgtcaggttgaggggttagacaggttctctttccagccttcactttgaaagatcccctctcctccttcacaaaagaaaggcgtaattcccatctctactgatctt------acatatcgttgacgttgtgaaaaccagtggtaccccaaagaaagggacaactcaaaattctggtgctgTGCTCCTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2148888 588 -   2996164 ATAACAAGATGATTTTTGCTCTGTTTACAAACATTTGAATGAACACTGAAAAATTCATCcaaattgttaaaaatattcagtgcctactaagagtcatggaaccctattatatgatggtgaatcgagaaagagctatac-aaaattatgctttcaaggaacttataattacattggctagaggcttatcagttctataaataatggttacaaaacaatgcaaTTTGAACCTTTATAGAGATTTGCATGGCTTGTTAAGAGAACCATAGTC-TAAGAcaatgggcttcaac-agggggatacgctctgggatgcagagacttttgtagggttataaagttagttttaaggaattaaacttctagatcctccttgtccctttgttttcttccctagtattttcttgaggaaatgtcaggttgaggggttagacaggttctctttccagccttcactttcaaagatcccctctcctccttcacaaaagaaaggcgtaattcccatctctactgatctt------acatatcgttgacattgtgaaaaccagtggtaccccaaagaaagggacaactcaaaattctggtgctgTGCTCCTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2029668 580 -   2157725 ATAACAAGATGATTTTTGCTCTGTTTACAAACATTTGAATGAACACTGAAAAATTCATCCAAATTGTTAAAAATATTCAATGCCTACTAAGAGTCATGGAACCCTATTATATGATGGTGAATTGAGAAAGAGCTATAC-AAAATTATGCTTTCAAGGAACTTATAATTACATTGGCTAGGGGCTTATCAGTTCTATAAATAATGGTTACAAAACCATGCAATTTGAACCTTCATAGAGATTTGCATGGCTTGTTAAGAGAACCATAGTC-TAAGAcaatgggcttcaac-aggaggacacgctctgggatgcagagacttttgtagggttataaagttagttttaaggaaataaacttctagatcctccttgtccctttgttttcttccctagcattttcttgaggaaatgccaggttgaggggttagacaggttctctttccagc--------tcaaagatcccctctcctccttcacaaaggaaaggcgtaattcccatctctactgatctt------acatatcattgacgttgtgaaaaccagtggtacaccaaagaaagggacaactcaaaattctggtgctgTGCTCCTCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28459873 588 -  71996105 ATAACAAGATGATTTTTGCTCTGTTTACAAACATTTGAATGAACACTGAAAAATTCATCCAAATTGTTAAAAATATTCAATGCCTACTAAGAGTCATGGAACCCTATTATATGATGGTGAATCGAGAAAAAGCTATAC-AAAATTATGCTTTCAAGGAACTTATAATTACATTGGCTAGAGGCTTATCAGTTCTATAAATAATGGTTACAAAACAATGCAATTTGAACCTTTATAGAGATTTGCATGGCTTGTTAAGAGAACCATAGTC-TAAGAcaatgggcttcaac-agggggatacgctctgggatgcagagacttttgtagggttataaagttagttttaaggaaataaacttctagatcctccttgtccctttgttttcttccctagcattttcttgaggaaatgccaggttgaggggttaggcaggttctctttccagccttcactttcaaagatcccctctcctccttcacaaaagaaaggcgtaattcccatatctactgatctt------acatatcattgacgttgtgataaccagtggtaccccaaaggaagggacaactcaaaattctggtgctgTGCTCCTCA
i chlSab2.chr17            I 111 C 0
s manLeu1.NW_012104165v1     2167540 580 +   2316924 ATAACAAGATGATTTTTGCTCTGTTTACAAACATTTGAATGAACACTGAAAAATTCATCCAAATTGTTAAAAATATTCAATGCCTACTAAGAGTCATGGAACCCTATTATATGATGGTGAATTGAGAAAGAGCTATAC-AAAATTATGCTTTCAAGGAACTTATAATTACATTGGCTAGAGGCTTATCAGTTCTATAAATAATGGTTACAAAACCATGCAATTTGAACCTTCATAGAGATTTGCATGGCTTGTTAAGAGAACCATAGTC-TAAGAcaatgggcttcaac-aggaggacacgctctgggatgcagagacttttgtagggttataaagttagttttaaggaaataaacttctagatcctccttgtccctttgttttcttccctagcattttcttgaggaaatgccaggttgaggggttagacaggttctctttccagc--------tcaaagatcccctctcctccttcacaaaggaaaggcgtaattcccatctctactgatctt------acatatcattgacgttgtgaaaaccagtggtacaccaaagaaagggacaactcaaaattctggtgctgTGCTCCTCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2031900 588 -   3067355 AGAACAAGATGATTTTTGCGCTGTTTACAAACATTTGAATGAACACTGAAAAATTCATCcaaattgttaaaaatattcaatgcctactaagagtcatggaaccctattatatgatggtgaatcgagaaagagctatac-aaagttatgctttcaaggaacttataattacattggctagaggcttatcagttctgtaaataatggttacaaaacaatgcaaTTTGAACCTTCATAGAGATTTGCATGGCTTGTTAAGAGAACCATAGTC-TAAGAcaatggacttcaac-agggggacacgttctgggatgcagatacttttgtagggttataaagttagttttaaggaaataaacttctagatcctccttgtccctttgttttcttccccagcattttcttgaggaaatgccaggttgaggggttagacgggttctctttccagccttcactttcaaagatcccctctcctgcttcacaaaagaaaggcataattcccatctctactgatctt------acatatcattgacgttgtgaaaaccagtggtacaccaaagaaagggacaactcaaaattctggtgctgTGCTCCTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171550595 585 - 171630274 ATAACAAGATGATTTTTG--CTGTTTACAAACATTTGAATGAACACTGAAAAATTCATCCAAATCATTAAAAA-ATTCAATGCATACAAAGAGTCTTGGAACCCTATTATATGATAGTGAATCAAGAAATAACTAT---AAAATTATGCTTTCAAGGAACTTGTAATTACATTGGCTTGAGGCTTATCAGTTATATAAATAATAGTTACAAAA--AGGCAATTGAAACTTTCATAGAGATTTGTATGGCTTGTTAACAGAACCACAGTC-TAAGAcaatgggcttcaac-agggggccacgctctggaatgcagagact--tgtagggttataaagttagttttaaggagataaacttctagatcctcattgttcctttgttcttttccctaatattttcttgagaagatgccagcttgagaggttggacaggttctctttccagccttcactttcaaaaatcccctctcctccttcacaaaagaaaggcataattcccatctctactgatcttactgtaacatatcatctccattgtgaaaagcagtggtataccaaacaaaggggcaactcagaatgctggtgctgggCTGCTCA
i calJac3.chr4             C 0 C 0
e dasNov3.JH561790            182132 8519 -    302817 I
e canFam3.chr35             26022106 93750 +  26524999 I
e otoGar3.GL873742           1650795 7699 -   2232465 I

a score=66352.000000
s hg38.chr6_GL000254v2_alt    308859 9 +   4827813 TCATTAAAG
s panTro5.chr6              29283899 9 + 175400573 TCATTAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29530090 9 + 173848474 TCATTAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5327112 9 +   6154872 TCATTAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74339983 9 + 122973662 TCATTAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29496036 9 + 172585720 TCATTAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29157151 9 - 170955103 TCATTAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2149476 9 -   2996164 TCATTAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2030248 9 -   2157725 TCATTAAAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28460461 9 -  71996105 TCATTAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2168120 9 +   2316924 TCATTAAAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2032488 9 -   3067355 TCATTAAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171551180 9 - 171630274 TCATTAGAG
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26115856 9 +  26524999 TCATGAATT
i canFam3.chr35            I 93750 C 0
e dasNov3.JH561790            182132 8519 -    302817 I
e otoGar3.GL873742           1650795 7699 -   2232465 I

a score=1445986.000000
s hg38.chr6_GL000254v2_alt    308868 198 +   4827813 ATGACATGATGGAAGAGAAAA---TATATATTTTTAGATTCTAGCAGTGTGTCTTTCTAGATCTATCTAGATTGGCTACTATTATTAAATAATGGGCACTTTT---AGAGAAAGGTATCAGATCATGGCAAAAATAAAAGTTTAATTAAAAAGTAATCACATTGTCCCAT-AAAAGCTAAATATTATA-TTATGATAAATAGAAAT
s panTro5.chr6              29283908 198 + 175400573 ATGACATGATGGAAGAGAAAA---TACATATTTTTAGATTCTAGCAGTGTGTCTTTCTAGATCTATCTAGATTGACTACTATTATTAAATAATGGGCACTTTT---AGAGAAAGGTATCAGATCATGGCAAAAATAAAAGTTTAATTAAAAAGTAATCACATTGTCCCAT-AAAAGCTAAATATTATA-TTATGATAAATAGAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29530099 198 + 173848474 ATGACATGATGGAAGAGAAAA---TATATATTTTTAGATTCTAGCAGTGTGTCTTTCTAGATCTATCTAGATTGACTACTATTATTAAATAATGGGCACTTTT---AGAGAAAGGTATCAGATAATGGCAAAAATAAAAGTTTAATTAAAAAGTAATCACATTGTCCCAT-AAAAGCTAAATATTATA-TTATGATAAATAGAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5327121 198 +   6154872 ATGACATGATGGAAGAGAAAA---TATATATTTTTAGATTCTAGCAGTGTGTCTTTCTAGATCTATCTAGATTGACTACTATTATTAAATAATGGGCACTTTT---AGAGAAAGGTATCAGATCGTGGCAAAAATAAAAGTTTAATTAAAAAGTAATCACATTGTCCCAT-AAAAGCTAAATATTGTA-TTATGATAAATAGAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74339992 195 + 122973662 ATGACATGATGGAAGAGAAAA---TATATATTTTTAGATTCTAGCAGTGTATCTTTCTAGATCTATCTAGATTG---ACTATTATTAAATAATGGACACTTTT---AGAGAAAGGTATCAGATCATAGCAAAAATAAAAGTTTAATTAAAAAGTAATCCCATTGTCCCAT-AAAAGCTAAACATTATA-TTATGATAAATAGAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29496045 194 + 172585720 ATGACATGATGGAAGAGAAAA---TACATATTTTTAGATTCTAGCAATGTATCTTTCTAAATCTATCTAAATTGACCACTATTACTAAATAATGGGCACTTTT---AGAGAAAGGTATCAGATCATGGCAGAAATAAAAGT----TTAAAAAGTAATCACATTGTCCCAT-AAAAGCTAAATATTATA-TTATGATAAATAGAAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29157160 194 - 170955103 ATGACATGATGGAAGAGAAAA---TACATATTTTTAGATTCTAGCAATGTATCTTTCTAAATCTATCTAAATTGACCACTATTACTAAATAATGGGCACTTTT---AGAGAAAGGTATCAGATCATGGCAGAAATAAAAGT----TTAAAAAGTAATCACATTGTCCCAT-AAAAGCTAAATATTATA-TTATGATAAATAGAAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2149485 194 -   2996164 ATGACATGATGGAAGAGAAAA---TACATATTTTTAGATTCTAGCAATGTATCTTTCTAAATCTATCTAAATTGACCACTATTACTAAATAATGGGCACTTTT---AGAGAAAGGTATCAGATCATGGCAGAAATAAAAGT----TTAAAAAGTAATCACATTGTCCCAT-AAAAGCTAAATATTATA-TTATGATAAATAGAAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2030257 194 -   2157725 ATGACATGATGGATGAGAAAA---TACATATTTTTAGATTCTAGCAATGTATCTTTCTAAATCTATCTAAATTGACCACTATTATTAAATAATGGGTACTTTT---AGAGAAAGGTATCAGATCATGGCAGAAATAAAAGT----TTAGAAAGTAATCACATTGTCCCAT-AAAAGCTAAATATTATA-TTATGATAAATAGAAAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28460470 176 -  71996105 ATGACATGATGGAAGAGAAA---------------------TAGCAATGTATCTTTCTAAATCTATCTAAATTGACCACTATTACTAAATAATGGGCACTTTT---AGAGAAAGGTATCAGATCATGGCAGAAATAAAAGT----TTAAAAAGTAATCACATTGTCCCAT-AAAAGCTAAATATTATA-TTATGATAAATAGAAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2168129 194 +   2316924 ATGACATGATGGATGAGAAAA---TACATATTTTTAGATTCTAGCAATGTATCTTTCTAAATCTATCTAAATTGACCACTATTATTAAATAATGGGTACTTTT---AGAGAAAGGTATCAGATCATGGCAGAAATAAAAGT----TTAAAAAGTAATCACATTGTCCCAT-AAAAGCTAAATATTATA-TTATGATAAATAGAAAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2032497 194 -   3067355 ATGACATGATGGAAGAGAAAC---TACATATTTTTAGATTCTAGCAATGTATCTTTCTAAATCTATCTAAATTGACCACTATTATTAAATAATGGGCACTTTT---AGAGAAAGGTATCAGATCATGGCAGAAATAAAAGT----TTAAAAAGTAATCACATTGTCCCAT-AAAAGCTAAATATTATA-TTATGATAAATAGAAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171551189 198 - 171630274 ATGACGTGATGGAAGTGAAAA---TACATATCTTAATATTCTAGCAATGTATCTTTATAAATCTACCCAGATTGACTACTATTATTAAATACTGGGCACTTTT---AGAGAAAGGTATCAGATCACAGCAAAAATAAAAGTTTAATTAAAAAGTATTCACATTGTCCCAT-AAAAGCTAAATAGTATA-TTATGCTAAATAGAAAT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1658494 202 -   2232465 ATGAAGTGATGGAAAAGAAAATATTATATACTTTTAGACTCTAGCAATGTCCCTTTCAAAATATATTTAGATTTGCTATAATTATTAAATAACAAGCACTTTT---AGAAAAAGCTTTCAGACCATAAAAAAACCCAAAGCTTAATCTGAAAGCAATCACATTATCCCAT-AAAAGAAAAATATTATATTTATGATAAATGGAAGT
i otoGar3.GL873742         I 7699 I 294
s canFam3.chr35             26115865 160 +  26524999 ATGAAGTGACACAGGAGACAA---TATATATCT------------------------------------GATTGGTTAGAATTATTAAAT------TACTTTTTAAAGAGAGAGGTATTCCATCACAGAAAATATCAAAAGTTATTTCAAAAGTCATCACATTTTCCCATAAAAAAACTGATACTGTG-GCATGATAAATGGAAAT
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790            182132 8519 -    302817 I

a score=6392.000000
s hg38.chr6_GL000254v2_alt    309066 1 +   4827813 A
s panTro5.chr6              29284106 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29530297 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5327319 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74340187 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29496239 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29157354 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2149679 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2030451 1 -   2157725 A
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28460646 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2168323 1 +   2316924 A
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2032691 1 -   3067355 A
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171551387 1 - 171630274 A
i calJac3.chr4             C 0 I 304
s otoGar3.GL873742           1658990 1 -   2232465 G
i otoGar3.GL873742         I 294 C 0
s canFam3.chr35             26116025 1 +  26524999 G
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790            182132 8519 -    302817 I

a score=6131905.000000
s hg38.chr6_GL000254v2_alt    309067 836 +   4827813 AAAAGATTTATTC-TGTTATGCAATTCCACTACATATAAACATTA---CCACATTTCTAAAAATTCACGTAAATCCGCCAGTTCCACAGA------------------------------------------------------------------------TGTATGT-------------------------------------------------------------------CAAAAGCCTAACTGGTTTCAAACTAGTCA----TATTATCTTTCCATTAA-GTTG-AGACAATCATGGAATAAACATTTAACGAATGAAAGAGAAATTGATAAGACTGTGTCATTACCTTTAAAACCCTTTAATTTGTGG----------CTTTATATTACG-ATAGAGTAGTAATAGACTTAAATAGCAGAGACCCTTTACTCAAGATATCGATTTGAAATTTCATTGAAAAAAGAGTGAATTGTTTTAAATGGGGCTTATGACAATTACTGTCTTATAAACTGCACTGTTTGCATCAAACACAAATAAATATTTGGGTGGCATTACAAAAGATTGGGTGTACAAAATCATTATTGTGTATATGTATA-TTTTTTCTCAAGCTCCAATAGAATGAACATTATGGGTATATTATTTAATATACACACCATAATGTATATGAAACCATTTGCTCAGGTCTATACTTTGGAAgaggcaaggattaacattgaaaatacaaaactagataaccaaaacagtttctatgtggttttagaataaattaaatgc-----------attcaaattta--------tgtttacatcccatttgtgttttatttcaagcaaaaataaaattt-ctaatg-atctg-ttttctctgatgatataccaatgatcagggacataaaggagctaagtagaatgGTTGTAATTTTGTTTGCATCTACAAAATGTTTGTATATAATAAT---TATATTTATGGATC---TCCATGACCTAGGAATTACTTGCGTTTGTAAAAAT
s panTro5.chr6              29284107 835 + 175400573 AAAAGATTTATTC-TGTTATGCAATTCCACTACATATAAACATTA---CCACATTTCTAAAAATTCACGTAAATCCGCCAGTTCCACAGA------------------------------------------------------------------------TGTATGT-------------------------------------------------------------------CAAAAGCCTAACTGGTTTCAAACTAGTCA----TATTATCTTTCCATTAA-GTTG-AGACAATCATGGAATAAACATTTAACGAATGAAAGAGAAATTGATAAGACTGTGTCATTACCTTTAAAACCCTTTAATTTGTGG----------CTTTATATTACG-ATAGAGTAGTA-TAGACTTAAATAGCAGAGACCCTTTACTCAAGATATCGATTTGAAATTTCATTGAAAAAAGAGTGAATTGTTTTAAATGGGGCTTATGACAATTACTGTCTTATAAACTGCACTGTTTGCATCAAACACAAATAAATATTTGGGTGGCATTACAAAAGATTGGGTGTACAAAATCATTATTGTGTATATGTATA-TTTTTTCTCAAGCTCCAATAGAATGAACATTATTTGTATATTATTTAATATACACACCATAATGTATATGAAACCATTTGCTCAGGTCTATACTTTGGAAgaggcaaggattaacattgaaaatacaaaactagataaccaaaacagtttctatgtggttttagaataaattaaatgc-----------attcaaattta--------tgtttacatcccatttgtgttttatttcaagcaaaaataaaattt-ctaatg-atctg-ttttctctgatgatataccaatgatcagggacataaaggagctaagtagaatgGTTGTAATTTTGTTTGCATCTACAAAATATTTGTATATAATAAT---TATATTTATTGATC---TCCATGACCTAGGAATTACTTGCGTTTGTAAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29530298 829 + 173848474 AAAAGATTTATTC-TGTTATGCAATTCCACTACATATAAACATTA---CCACATTTCTAAAAATTCACGTAAATCCGCCAGTTCCACAGA------------------------------------------------------------------------TGTATGT-------------------------------------------------------------------CAAAAGCCTAACTGGTTTCAAACTAGTCA----TATTATCTTTCCATTAA-GTTG-AGACAATCATGGAATAAACATTTAACGAATGAAAGAGAAATTGATAAGACTGTGTCATTACCTTTAAAACCCTTTAATTTGTGG----------CTTTATATTACG-ATAGAGTAGTA-TAGACTTAAATAGCAGAGACCCTTTACTCAAGATATCGATTTGAAATTTCATTGAAAAAAGAGTGAATTGTTTTAAATGGGGCTTATGACAATTACTGTCTTATAAACTGCACTGTTTGCATCAAACACAAATAAATATTTGGGTGGCATTACAAAAGATTGGGTGTACAAAATC---ATTGTGTATATGTATATTTTTTTCTCAAGCTCCAATAGAATGAACATTATTTGTATA----TTAATATACACACCATAATGTATATGAAACCATTTGCTCAGGTCTATACTTTGGAAgaggcaaggattaacattgaaaatacaaaactagataaccaaaacagtttctatgtggttttagaataaattaaatgc-----------attcaaattta--------tgtttacatcccatttgtgttttatttcaagcaaaaataaaattt-ctaatg-atctg-ttttctctgatgatataccaatgatcagggacataaaggagctaagtagaatgGTTGTAATTTTGTTTGCATCTACAAAATGTTTGTATATAATAAT---TATATTTATTGATC---TCCATGACCTAGGAATTACTTGCGTTTGTAAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5327320 828 +   6154872 AAAAGATTTATTC-TGTTATGCAATTCCACTACATATAAACATTA---CCACATTTCTAAAAATTCACGTAAATCCGCCAGTTCCACAGA------------------------------------------------------------------------TGTATGT-------------------------------------------------------------------CAAAAGCCTAACTGGTTTCAAACTAGTCA----TATTATCTTTCCATTAA-GTTG-AGACAATCATGGAATAAACATTTAACGAATGAAAGAGAAATTGATAAGACTGTGTCATTACCTTTAAAACCCTTTAATATGTGG----------CTTTATATTACG-ATAGAGTAGTAATAGACTTAAATAGCAGAGACCCTTTACTCAAGATATCGATTTGAAATTTCATTGAAAAAAGAGTGAATTGTTTTAAATGGGGCTTATGACAAT---TGTCTCATAAACTGCACTGTTTGCATCAAACACAAATAAATATTTGGGTGGCATTACAAAAGATTGGGTGTACAAAATCATTATTGTGTATATGTATA-TTTTTTCTCAAGCTCCAATAGAATGAACATTATTTGTATATTATTTAATATACACACCATAATGTATATGAAACCATTTGCTCAGGTCTATACTTTGGAAGAGGCAAGGATTAACATTGAAAATACAAAACTAGATAACCAAAACAGTTTCTATGTAGTTTTAGAATAAATTAAATGC-----------ATTCAAATTTA--------TGTTTACATCCCATTTGTGTTATATTTCAAGCAAAAATAAAATTT-CTAATG-ATCTA-TTTTCTCTGATGATATACCAATGATCAGGGACATAAAGGAGCTAAGTAGAATGGTTGTAATTTTGTTTGCATCTACAAAATGTTTGTATATAATA--------ATTTATTGATC---TCCATGACCTAGGAATTACTTGCGTTTGTAAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74340188 834 + 122973662 AAAAGATTTATTC-TGTTATGAAATTCCACTACATATAAACATTA---CCACATTTCTAAAAATTCACGTAAATTCCCCAATTCCACATA------------------------------------------------------------------------TGTATGT-------------------------------------------------------------------CAAAAGCCTGACTGGTTTTAAACTAGTCA----TATTATCTTTCCATTAC-GTTG-AGACAATCATGGAATAAACATTTCATGAATGAAATAGAAATCGGTAAGACTGTGTCATTACCTTTAAAACCCTTTAATTTGTGGC-------TTCTTTATATTACG-ATAGAGTAGTAATAGACTTAAACAGCAAAGACCCTTTACTCAAGATATCGATTTGAAATTTCATTGAAAAAAGAGTGAATTGTTTTAAATGGGGCTTATGACAATTACTGTCTTATAAACTACACTGTTTGCATCAAACACAAATAAATATTTGGGTGGCATTACAAAAGACTGGGCATACAAAATCATTACTGTGAATATGTTTA-TTTTTTCTCAAGCTCCAATAGTATGAACATTATTTGTATATTATTTAATATACACACCATAATGTATATGAAACCATTTACTCAGGTCTATACTTtggaagaggccaggattaacattgaaaatacaaaactagataaccaaaacagtttctatggggttttagaa-----taaatgc-----------attcaaattta--------tgtttacatcccatttgtgttttatttcaagcaaaaataaaattt-ctaatg-atctg-ttttctctgatgatataccaatgatcagggacataaaggagctaagtagaatgGTTGTAATTTTGTTTGCATATACAAAATATTTGTATATAATAAT---TATATTTATTGATC---TCCATGACCTTGGAATTACTTGCCTTTGTAAAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29496240 836 + 172585720 AAAAGATTTATTC-TTTTATGAAATTCTACTACATATAAACATTA---CCACATTTCTAAAAATTCACATAAATTCCCCAATTCCACAGA------------------------------------------------------------------------TGTATGT-------------------------------------------------------------------CAAAAGCCTAACTGGTTTCAAACCTATCA----TATTATCTTTCCATTAA-GTTG-AGACAATCATGGAATAAATATTTCATGAATGAAAGATAAATGGATAAGACTGTGTCATTACCTTTAAAACCCTTTAATTTGTGGC-------TTCCTTGTATTATG-ATAGAGTAGTAATAGACTTAAGTAACAAAGACCCTTTACTCAAGATATCGATTTGAAATTTCACTGAAAAAAAAGTGAATTGTTTTAAATGGGGCTTATGACAAT---TGTCTTATAAACTGCACTGTTTGCATCAAACACAAATAAATATTTGGGTGGCATTACAAAAGATTGGGTCTACAAAATCATTACTGTGTATATATATC-TTTTTTCTCAAGCTCCAATAGAATGAACATTACTTGCATATTACTTAATGTACACACCATAATGCATATGAAGCCATTTACTCAAGTCCATATTTTGGAAGAGGCAAGGATTAACATTGAAAATACAAAACTAGATAACCAAAACAGTTGCTATGGGGTTTTAGAATAAATTAAATGC-----------ATTCACATTTA--------TGTTTACATCCCATTGGTGTTATATTTCAAGCAAAAATAAAATTT-CTAATG-ATCTG-TTTTCTCTGATGATATACCAATGATCAGGGACATAAAGGAGCTAAGTAGAATGGTTGTAATTTTGTTTGCATCTACAAAATGTTTGTATATAATAAT---TATATTTATTGATC---TCTATGATGTAGGAATTACTTGCCTTTGTAAAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29157355 836 - 170955103 AAAAGATTTATTC-TTTTATGAAATTCTACTACATATAAACATTA---CCACATTTCTAAAAATTCACATAAATTCCCCAATTCCACAGA------------------------------------------------------------------------TGTATGT-------------------------------------------------------------------CAAAAGCCTAACTGGTTTCAAACCTATCA----TATTATCTTTCCATTAA-GTTG-AGACAATCATGGAATAAATATTTCATGAATGAAAGATAAATGGATAAGACTGTGTCATTACCTTTAAAACCCTTTAATTTGTGGC-------TTCCTTGTATTATG-ATAGAGTAGTAATAGACTTAAGTAACAAAGACCCTTTACTCAAGATATCGATTTGAAATTTCACTGAAAAAAAAGTGAATTGTTTTAAATGGGGCTTATGACAAT---TGTCTTATAAACTGCACTGTTTGCATCAAACACAAATAAATATTTGGGTGGCATTACAAAAGATTGGGTGTACAAAATCATTACTGTGTATATATATC-TTTTTTCTCAAGCTCCAATAGAATGAACATTACTTGCATATTACTTAATGTACACACCATAATGCATATGAAGCCATTTACTCAAGTCCATATTTTGGAAGAGGCAAGGATTAACATTGAAAATACAAAACTAGATAACCAAAACAGTTGCTATGGGGTTTTAGAATAAATTAAATGC-----------ATTCACATTTA--------TGTTTACATCCCATTGGTGTTATATTTCAAGCAAAAATAAAATTT-CTAATG-ATCTG-TTTTCTCTGATGATATACCAATGATCAGGGACATAAAGGAGCTAAGTAGAATGGTTGTAATTTTGTTTGCATCTACAAAATGTTTGTATATAATAAT---TATATTTATTGATC---TCTATGATGTAGGAATTACTTGCCTTTGTAAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2149680 835 -   2996164 AAAAGATTTATTC-TTTTATGAAATTCTACTACATATAAACATTA---CCACATTTCTAAAAATTCACATAAATTCCCCAATTCCACAGA------------------------------------------------------------------------TGTATGT-------------------------------------------------------------------CAAAAGCCTAACTGGTTTCAAACTTATCG----TATTATCTTTCCATTAA-GTTG-AGACAATCATGGAATAAATATTTCATGAATGAAAGATAAATGGATAAGACTGTGTCATTACCTTTAAAACCCTTTAATTTGTGGC-------TTCCTTGTATTATG-ATAGAGTAGTAATAGACTTAAGTAACAAAGACCCTTTACTCAAGATATCGATTTGAAATTTCATTG-AAAAAAAGTGAATTGTTTTAAATGGGGCTTATGACAAT---TGTCTTATAAACTGCACTGTTTGCATCAAACACAAATAAATATTTGGGTGGCATTACAAAAGATTGGGTGTACAAAATCATTACTGTGTATATATATC-TTTTTTCTCAAGCTCCAATAGAATGAACATTACTTGCATATTACTTAATGTACACACCATAATGCATATGAAGCCATTTACTCAAGTCCATATTTTGGAAgaggcaaggattaacattgaaaatacaaaactagataaccaaaacagttgctatggggttttagaataaattaaatgc-----------attcacattta--------tgtttacatcccattggtgttatatttcaagcaaaaataaaattt-ctaatg-atctg-ttttctctgatgatataccaatgatcagggacataaaggagctaagtagaatgGTTGTAATTTTGTTTGCATCTACAAAATGTTTGTATACAATAAT---TATATTTATTGATC---TCTATGATGTAGGAATTACTTGCCTTTGTAAAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2030452 828 -   2157725 AAAAGATTTATTC-TTTTATGAAATTCCACTACATATAAACATTA---CCACATTTCTAAAAATTCACATAAATTCCCCAATTCCACAGA------------------------------------------------------------------------TGTATGT-------------------------------------------------------------------CAAAAGCCTAACTGGTTTCAAACTAATCA----TGTTATCTTTCCATTAA-GTTG-AGACAATCATGGAACAAATATTTCATGAATGAAAGATAAATGGATAAGACTGTGTCATGACCTTTAAAACCCTTTAATTTGTGGC-------TTCCTTGTATTATG-ATAGAGTAGTAATAGACTTAAGTAACAAAGACCCTTTACTCAAGATATCGATTTGAAATTTCATTGAAAAAAAAGTGAATTGTTTTAAATGGGGCTTATGACTAT---TGTCTTATAAACTGCACTGTTTGCATCAAACACAAATAAATATTTGGGTGGCATTACAAAAGATTGGGTGTACAAAATCATTATTGTGTATATATATA-TTTTTTCTCAAGCTCCAATAGAATGAACATTATTTGTATATTACTTAATATACACACCATAATGCATATGAAGCCTTTTACTCAGGTCCATATTTTGGAAGAGGCAAGGATTAACATTGAAAATACAAAACTAGATAGCCAAAACAGTTGCTATGGGGTTTTAGAATAAATTAAATGC-----------ATTCACATTTA--------TGTTTATATCCCATTTGTGTTATATTTCAAGCAAAAATAAAATTT-CTAATG-ATCTG-TTTTCTCTGATGATATACCAATGATCAGGGACATAAAGGAGCTAAGTAGAATGGTTGTAATTTTGTTTGCATCTACAACATGTTTGTATATAATAAT---TATATTTATTGATC---TCTATGATGTAGGAAT--------TTTGTAAAAAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28460647 834 -  71996105 AAAAGATTTATTC-TTTTATGAAATTCCACTACATATAAACATTA---CCACATTTCTAAAAATTCACATAAATTCCCCAATTCCACAGA------------------------------------------------------------------------TGTATGT-------------------------------------------------------------------CAAAAGCCTAACTGGTTTCAAACTAATCA----TATTATCTTTCCATTAA-GTTG-AGACAATCCTGGAATAAATATTTCATGAATGAAAGATAAATGGATAAGACTGTGTCATTACCTTTAAAACCCTTTAATTTGTGGC-------TTCCTTGTATTATG-ATAGAGTAGTAATAGACTTAAGTAACAAAGACCCTTTACTCAAGATATCGATTTGAAATTTCATTG-AAAAAAAGTGAATTGTTTTAAATGGGGCTTATGACAAT---TGTCTTATAAACTGCACTGTTTGCATCAAACACAAATAAATATTTGGGTGGCATTACAAAAGATTGGGTGTACAAAATCATTATTGTGTATATATATC-TTTTTTCTCAAGCTCCAATAGAATGAACATTACTTGCATATTACTTAATATACACACCATAATGCATATGAAGCCATTTACTCAGGTCCATATTTTGGAAGAGGCAAGGATTAACATTGAAAATACAAAACTAGATAACC-AAACAGTTGCTATGGGGTTTTAGAATAAATTAAATGC-----------ATTCACATTTA--------TGTTTACATCCCATTTGTGTTATATTTCAAGCAAAAATAAAATTT-CTAATG-ATCTG-TTTTCTCTGATGATATACCAATGATCAGGGACATAAAGGAGCTAAGTAGAATGGTTGTAATTTTGTTTGCATCTACAAAATGTTTGTATATAATAAT---TATATTTATTGATC---TCTATGATGTAGGAATTACTTGCCTTTGTCAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2168324 828 +   2316924 AAAAGATTTATTC-TTTTATGAAATTCCACTACATATAAACATTA---CCACATTTCTAAAAATTCACATAAATTCCCCAATTCCACAGA------------------------------------------------------------------------TGTATGT-------------------------------------------------------------------CAAAAGCCTAACTGGTTTCAAACTAATCA----TGTTATCTTTCCATTAA-GTTG-AGACAATCATGGAATAAATATTTCATGAATGAAAGATAAATGGATAAGACTGTGTCATGACCTTTAAAACCCTTTAATTTGTGGC-------TTCCTTGTATTATG-ATAGAGTAGTAATAGACTTAAGTAACAAAGACCCTTTACTCAAGATATCGATTTGAAATTTCATTGAAAAAAAAGTGAATTGTTTTAAATGGGGCTTATGACTAT---TGTCTTATAAACTGCACTGTTTGCATCAAACACAAATAAATATTTGGGTGGCATTACAAAAGATTGGGTGTACAAAATCATTATTGTGTATATATATA-TTTTTTCTCAAGCTCCAAAAGAATGAACATTATTTGTATATTACTTAATATACACACCATAATGCATATGAAGCCTTTTACTCAGGTCCATATTTTGGAAgaggcaaggattaacattgaaaatacaaaactagatagccaaaacagttgctatggggttttagaataaattaaatgc-----------attcacattta--------tgtttatatcccatttgtgttatatttcaagcaaaaataaaattt-ctaatg-atctg-ttttctctgatgatataccaatgatcagggacataaaggagctaagtagaatgGTTGTAATTTTGTTTGCATCTACAAAATGTTTGTATATAATAAT---TATATTTATTGATC---TCTATGATGTAGGAAT--------TTTGTAAAAAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2032692 833 -   3067355 AAAAGATTTATTC-TTTTATGAAATTCCACTACATATAAACATTA---CCACATTTCT-AAAATTCACATAAATTCCCCAATTCCACAGA------------------------------------------------------------------------TGTATGT-------------------------------------------------------------------TAAAAGCCTAACTGGTTTCAAACTAATCA----TATTATCTTTCCATTAA-GTTG-AGACAATCATGGAATAAATATTTCATGAATGAAAGATAAATGGATAAGACTGTGTCCTTACCTTTAAAACCCTTTAATTTGTGGC-------TTCCTTGTATTATG-ATAGAGTAGTAATAGACTTAAGTAACAAAGACCCTTTACTCAAGATATCGATTTGAAATTTCATTG-AAAAAAAGTGAATTGTTTGAAATGGGGCTTATGACAAT---TGTCTTATAAACTGCACTGTTTTCATCAAACACAAATAAATATTTGGGTGGCATTACAAAAGATTGGGTGTACAAAATCATTATTGTGTATATATATC-TTTTTTCTCAAGTTCCAATAGAATGAACATTATTTGTATATTACTTAATATACACACCATAATGCATATGAAGCCATTTACTCAGGTCCATATTTTGgaagaggcacggattaacattgaaaatacaaaactagataaccaaaacagttgctatggggttttagaataaattaaatgc-----------attcacattta--------tgtttacat-ccatttgtgttgtatttcaagcaaaaataaaattt-cgaatg-atctg-ttttctctgatgatataccaatgatTAGGGACATAAAGGAGCTAAGTAGAATTGTTGTAATTTTGTTTGCATCTACAAAATGTTTGTATATAATAAT---TATATTTATTGATC---TCTATGATGTAGGAATTACTTGCCTTTGTAAAAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171551692 820 - 171630274 AAAATATTTATTC-TTTTATGAAATTCCACTGCATATAAACATTA---CCACATTTCTAAAAATTTACATAAATTCTACAGTTCCACAGA------------------------------------------------------------------------TGTATTT-------------------------------------------------------------------CAAAAGCCTAACTGGTTTCAAACTAGTTGTATTTATTATCTTTCCATTAA-GTTG-AGACAATCACCGAATAAATATTTCATGAATGAAAGAGAAATGAATAAAACTCTGCCATTACGTTTAAACGCCTTTAATTTGTGGC----------------TTATG-ATAGAGTAATAATAGACCTAA----CAAAGACCATTTACTCAAGATATTGATTTGAAGTTTCATTGAAAAAAGAGTGAATTGCTTTCAATGGGGCTTATGACAATTATTGTCTTACAGACTGCACTGTTTGCATCAAACACAAATAAATATTTGGGTGGCATCATGAAAGA----GGGTACAAAATCATTATTGTGTATATATTTC----------AAGCTCCAACAGTATGAACATTATTTGTATATTACTTAATATACACACCATAATGTATAGGAAACTATTTACTCAGGTCTATACTTGGGAAGAGCCAAGCATTAACATTGAAAGTACAAAACTAGGTGACTATAACTGTTTCTATGGGGCTTTAGAATAAACTGAATTC-----------ATTCAAATTTG--------TGTTTACATCCCATTTGTGTTGTATGTCAAGCAAAAATAAAATGT-CTAATG-TTCTG-TTTTCACTGATGATATAGTGATGATCAGAGGCATAAAAGAACTACGTGGAATGGTTATAATTTTATTTGCATCTTCAAAGTGTTTATATATAAGAATTACTATATTTATTGATC---TGTATGACATAGGAATTACTTGCCTTTGTAAAAAT
i calJac3.chr4             I 304 C 0
s otoGar3.GL873742           1658991 792 -   2232465 AAAAGATTTATTC-TTCTGTGAAATTCCACTCTATGTGAATATTA---CCACATTTCTAAAAATTCAC--AAAATTCATAATTCTACAGA------------------------------------------------------------------------TGTGTTT-------------------------------------------------------------------CAAAAGCCTAACTGGTCTCAAACTCGTCC----------ATTTCCATTAAGGTTG-CAATAATCATGGAATACGTATTTCATGAATGAATGAGAAGTGGATAAGAC--TGTTGTCACCTTGAAAAGCTTTTAATTTGTGAC-------TTTTCCCTTCCCTGTATGAAATAGTGATAGAC-----AAATAAAAATGTTTTATCCAAGGTATTCATATCAAGTTTCATTGAACAAAGAGTGAATTGTTTTAGTTGGGGTTTATGACAATTACTGAACTGTAGATTGCACTGTCTGCATCAAACATGCATAAATCTTTGGATGGCACCACAAAACATTTAATGTACAAAATCATTATT-------TGTATA----------------------------------------ATTGCTTAATATGCATACCATAACATACATGAAAACATTCATTCAGATCTATATTTTGGAAGATCGTAACATTATTGTTGAAAATACAAAGCCAGATAACTAAAACAGTTTCTCTAGAGCTTTAGAATAAATTAAATGCTAAACACAAATGATTAAATTTA--------TGTTTATATTCTCTTTGTGTTACATTTCAACAAAAAATAAAATTTCCTAATC-ACTAGTTTTTTTCTGATGATGTGCCAGTGGTTAGAGATATAAAAGAGCTAAATGGGATGGTACTATTATTGTTTGCACCCACAAAATATTTGTACATAAGAAT---TAT-TATACTAATT---TCTATGAATTAGGGATTATTTGCCTCCATAAAAAT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26116026 874 +  26524999 AAAAGATTTATTCATTTTATGAAATTCCACTACATAAAAAGTATAAATCTACATTTCTCAAAATTTACATAAATTCTATGATTCTATAGGTAGATCAAAGCCAAATCctgggtgacggggactgaggagggcacttgatgtgataagcgctgggtgttattctatatgttggcaaattgaacaccaataaaaaataaatttataaaaaatttaaaaatttaaaaattaaaaaaaaGCCAAATCCTAACTAATGTCAAGCTAGTCA----TTTTA--TTTCCATTGA-GGTGAAGACAATCATGGAAAAAATGTTTCATGAATGAATAAGTGATGAATAAGACTATCTTATCATGTTTTAAACCCTTTAATTTGTGTCTTCTCACTTCCTTGTATCATG-ATAAAGAAGAAATA-ATTTGAATAAGAAAGAC--TCTACTCAAAATATCAATA-------------------------------------------------AAT---AGTTATATA----------------------ACAAAAAAATAGTTATATAACATCACAAGAGATTTAATGTACAAGGTCATGATT-------TGTATA-TT-------------------------------------ATTATTTAGTATACAAACCATACTGTATATGAATCCAGTTATCCAAGTCTATATTTCTGAAGATCCAAGAATTTGCATATAAAATAGAAAACTAGATCATCAAAA--GTTTTTGTGGGCCTTTAGGGTGAATTAAATGC-----------ATTCAAGTTTATATCCTCTTGTTTACATCC--TCTGTATTATATTACAAACAAAAATAAAAATT-CTTAGGAAGTTA-TTTTCTCTGAAGGTATGCCAATTATTAGAGTCATAATAGAGCTAAATAGGATGGTTGTAGTATTCTTTGCATACATAGAATGTTTATATACAGAAAC---TAT-TCTATTAATTGTGTCTATGGTCCAGGGATTAGTTGCTTCAGCAGAAAT
i canFam3.chr35            C 0 I 1384
e dasNov3.JH561790            182132 8519 -    302817 I

a score=1841.000000
s hg38.chr6_GL000254v2_alt    309903 1 +   4827813 -T
s panTro5.chr6              29284942 1 + 175400573 -T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29531127 1 + 173848474 -T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5328148 1 +   6154872 -T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74341022 1 + 122973662 -T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29497076 1 + 172585720 -T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29158191 1 - 170955103 -T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2150515 1 -   2996164 -T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2031280 1 -   2157725 -T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28461481 1 -  71996105 -T
i chlSab2.chr17            C 0 I 180
s manLeu1.NW_012104165v1     2169152 1 +   2316924 -T
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2033525 1 -   3067355 -T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171552512 1 - 171630274 -T
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1659783 1 -   2232465 -T
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26118284 1 +  26524999 a-
i canFam3.chr35            I 1384 C 0
e dasNov3.JH561790            182132 8519 -    302817 I

a score=637774.000000
s hg38.chr6_GL000254v2_alt    309904 76 +   4827813 AAAGAAAATTAGAAAACATATTTAATTGCC-----TTATTCACTCTAGTCTTTATCTATGACTTGCAATTCCTCTTTATTT
s panTro5.chr6              29284943 76 + 175400573 AAAGAAAATTAGAAAACATATTTAATTGCC-----TTATTCACTCTAGTCTTTATCTATGACTTGCAATTCCTCTTTATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29531128 76 + 173848474 AAAGAAAATTAGAAAACATATTTAATTGCC-----TTATTCACTCTAGTCTTTATCTATGACTTGCAATTCCTCTTTATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5328149 76 +   6154872 AAAGAAAATTAGAAAACATATTTAATTGCC-----TTATTCACTCTAGTCTTTATCTATGACTTGCAATTCTTCTTTATTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74341023 76 + 122973662 AAAGAAAATTAGAAAACATATTTAATTGCC-----TTATTCACTCTAGTCTTTTTCTATGACTTGCAATTCCTCTTTATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29497077 76 + 172585720 AAAGAAAGTTAGAAAACATATTTAATTGCC-----TTATTCACTCTAGTCTTTTTCTATGACTTGCAATTTCTCTTTATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29158192 76 - 170955103 AAAGAAAGTTAGAAAACATATTTAATTGCC-----TTATTCACTCTAGTCTTTTTCTATGACTTGCAATTTCTCTTTATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2150516 76 -   2996164 AAAGAAAATTAGAAAACATATTTAATTGCC-----TTATTCACTCTAGTCTTTTTCTATGACTTGCAATTTCTCTTTATTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2031281 76 -   2157725 AAAGAAAATTAGAAAACATATTTAATTGCC-----TTATTCACTCTAGTCTTTTTCTATGACTTGCAATTTCTCTTTATTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28461662 76 -  71996105 aaagaaaattagaaaaCATATTTAATTGCC-----TTATTCACTCTAGTCTTTTTCTATGACTTGCAATTTCTCTTTATTT
i chlSab2.chr17            I 180 C 0
s manLeu1.NW_012104165v1     2169153 76 +   2316924 AAAGAAAATTAGAAAACATATTTAATTGCC-----TTATTCACTCTAGTCTTTTTCTATGACTTGCAATTTCTCTTTATTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2033526 76 -   3067355 AAAGAAAATTAGAAAACATATTTAATTGCC-----TTATTCACTTTAGTCTTTTTTTATGACTTGCAGTTTCTCTTTATTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171552513 76 - 171630274 AAAGACAATTAGAAAACATATTTAATTGCC-----TTATTCACTCTAGTCTTTTTCTAGGACTTGCAGTTTGTCTTTATTT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1659784 81 -   2232465 AGAGACAATTAGAAATCATATTTAATTGCCCTATTCTATTCACTCCAATCTTTTTCTATGACTTCCAGTTTCTCTGTATTT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26118285 76 +  26524999 aaagacaattagaaaaCATATTTCATTGAC-----TTATCCAGGGTAATATTTTTCTGTGATATCTGGTTCCTCTTCAATT
i canFam3.chr35            C 0 C 0
e dasNov3.JH561790            182132 8519 -    302817 I

a score=9426610.000000
s hg38.chr6_GL000254v2_alt    309980 979 +   4827813 TTGTAGATTTGTGGTGAAAT--------CTCATCAGTTTCTTCAGGGCATCCTTCATGTCCTTATTTCTTAAGGTGTAAATGAGCGGGTTGAGACTTGGAGTGATGACGGTGTAAAAGAGGGTGAGGAACTTGCCCTGGTCTTTGGAAGCCCTGTTACCTGGTTGCAGGTACATGTAGATAATAGTTCCATAGAACATAGACACTACAGTAAGATGAGATCCACAGGTATTCATTGCTTTTCGCTGGCTTGCTTTTGACTTCGTTCTCAGCACAGCTTTGGCAATGTAGCCATAGGATATAAGAATAAGGATGAGAGGTGTGAGGACAATTATAATGCCTAAAGCGAAAACAGACATTTCAACTGTTGTGGTGTCTACACAAGCTATCTTGACCAGAGCTGGCAACTCACACAAGAAATGATCCAGAATGTTGTTTCCACATGTGGGCAAATTCAGAGTGAGTGTACATAATACTACAGAATTGGCCAAACTAATACTCCAGATCATGATAATCATCTTTAGACATAGATGTGGGTTCATGACTACAAAATAATGCAAGGGCTTACATATAGCTGTAAAACGATCATAGGACATAACAGCCAGGAGAAGGCACTCAACTGAGCCCAACCACATGTAAACATAGAGTTGGATGATACAACCCACATAGCTGATGGTCTTATCAGGTCCCCACAAGTTGACCAGCATCTGAGGGATGATGCTGGTTGTGAAACATAGATCTAGGAAAGATAAATTTCTGAGGAAAAAGTACATTGGTGTATGAAGCTGGGAATCCAGGAGAGATGCAAGAATGATGGCTGTGTTACCCACCAATGTAATTAAGTAGAAGATGGCGACAACTCCTGACAGGATCATCTCCATTTTTGGATGGTTAGAGAAGCCAAGCAGAATAAAACCATGTAAAGAACTATAATTGCTTTGGTCCATAGTCCTTC---AATGTCTAAATCCTAGAGTGagaaaaggaggagg
s panTro5.chr6              29285019 979 + 175400573 TTGTAGATTTGTGGTGAAAT--------CTCATCAGTTTCTTCAGGGCATCCTTCATGTCCTTATTTCTTAAGGTGTAAATGAGCGGGTTGAGACTTGGAGTGATGATGGTGTAAAAGAGGGTGAGGAACTTGCCCTGGTCTTTGGAAGCCCTGTTACCTGGTTGCAGGTACATGTAGATAATAGTTCCATAGAATATAGACACTACAGTAAGATGAGATCCACAGGTATTCATTGCTTTTCGCTGGCTTGCTTTTGACTTCATTCTCAGCACAGCTTTGGCAATGTAGCCATAGGATATAAGAATAAGGATGAGAGGTGTGAGGACAATTATAATGCCTAAAGCGAAAACAGACATTTCAACTGTTGTGGTGTCTACACAAGCTATCTTGACCAGAGCTGGCAACTCACACAAGAAATGATCCAGAAGCTTGTTTCCACATGTGGGCAAATTCAGAGTGAGTGTACATAATACTACAGAATTGGCCAGACTAATACTCCACATCATGATAATCATCTTTAGACATAGATGTGGGTTCATGACTACAAAATAATGCAAGGGCTTACATATAGCTGTAAAACGATCATAGGACATAACAGCCAGGAGAAGGCACTCAACTGAGCCCAACCACATGTAAACATAGAGTTGGATGATACAACCCACATAGCTGATGGTCTTATCAGGTCCCCACAAGTTGACCAGCATCTGAGGGATGATGCTGGTTGTGAAACATAGATCTAGGAAAGATAAATTTCTGAGGAAAAAGTACATTGGTGTATGAAGCTGGGAATCCAGGAGAGATGCAAGAATGATGACTGTGTTACCCACCAATGTAATTAAGTAGAAGATGGCGACAACTCCTGACAGGATCATCTCCATTTTTGGATGGTCAGAGAAGCCAAGCAGAATAAAACCATGTAAAGAACTATAATTGCTTTGGTCCATAGTCCTTC---AATGTCTAAATCCTAGAGTGagaaaaggaggagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29531204 979 + 173848474 TTGTAGATTTGTGGTGAAAT--------CTCATCAGTTTCTTCAGGGCATCCTTCATGTCCTTATTTCTTAAGGTGTAAATGAGCGGGTTGAGACTTGGAGTGATGATGGTGTAAAAGAGGGTGAGGAACTTGCCCTGGTCTTTGGAAGCCCTGTTACCTGGTTGCAGGTACATGTAGATAATAGTTCCATAGAATATAGACACTACAGTAAGATGAGATCCACAGGTATTCATTGCTTTTCGCTGGCTTGCTTTTGACTTCATTCTCAGCACAGCTTTGGCAATGTAGCCATAGGATATAAGAATAAGGATGAGAGGTGTGAGGACAATTATAATGTCTAAAGCGAAAACAGACATTTCAACTGTTGTGGTGTCTACACAAGCTATCTTGACCAGAGCTGGCAACTCACACAAGAAATGATCCAGAAGGTTGTTTCCACATGTGGGCAAATTCAGAGTGAGTGTACATAATACTACAGAATTGGCCAAACTAATACTCCAGATCATGATAATCATCTTTAGACATAGATGTGGGTTCATGACTACAAAATAATGCAAGGGCTTACATATAGCTGTAAAACGATCATAGGACATAACAGCCAGGAGAAGGCACTCAACTGAGCCCAACCACATGTAAACATAGAGTTGGATGATACAACCCACATAGCTGATGGTCTTATCAGGTCCCCACAAGTTGACCAGCATCTGAGGGATGATGCTGGTTGTGAAACATAGATCTAGGAAAGATAAATTTCTGAGGAAAAAGTACATTGGTGTATGAAGCTGGGAATCCAGGAGAGATGCAAGAATGATGGCTGTGTTACCCACCAATGTAATTAAGTAGAAGATGGCGACAACTCCTGACAGGATCATCTCCATTTTTGGATGGTCAGAGAAGCCAAGCAGAATAAAACGATGTAAAGAACTATAATTGCTTTGGTCCATAGTCCTTC---AATGTCTAAATCCTAGAGTGagaaaaggaggagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5328225 979 +   6154872 TTGTAGATTTGTGGTGAAAT--------CTCATCAGTTTCTTCAGGGCATCCTTCATGTCCTTATTTCTTAAGGTGTAAATGAGCGGGTTGAGACTTGGAGTGATGACGGTGTAAAAGAGGGTGAGGAACTTGCCCTGGTCTTTGGAAGCCCTGTTACCTGGTTGCAGGTACATGTAGATAATAGTTCCATAGAATATAGACACTACAGTAAGATGAGATCCACAGGTATTCATTGCTTTTCGCTGGCTTGCTTTTGACTTCATTCTCAGCACAGCTTTGGCAATGTAGCCATAGGATATAAGAATAAGGATGAGAGGTGTGAGGACAATTATAATGCCTAAAGCGAAAACAGACATTTCAACTGTTGTGGTGTCTACACAAGCTATCTTGACCAGAGCTGGCAACTCACACAAGAAATGATCCAGAAGGTTGTTTCCACATGTGGGCAAATTCAGAGTGAGTGTACATAATACTACAGAATTGGCCAAACTAATACTCCAGATCACGATAATCATCTTTAGACATAGATGTGGGTTCATGACTACAAAATAATGCAAGGGCTTACATATAGCTGTAAAACGATCATACGACATAACAGCCAGGAGAAGGCACTCAACTGAGCCCAACCACATGTAAACATAGAGTTGGATGATACAACCCACATAGCTGATGGTCTTATCAGGTCCCCACAAGTTGACCAGCATCTGAGGGATGATGCTGGTTGTGAAACATAGATCTAGGAAAGATAAATTTCTGAGGAAAAAGTACATTGGTGTATGAAGCTGGGAATCCAGGAGAGATGCAAGAATGATGGCTGTGTTACCCACCAATGTAATTAAGTAGAAGATGGCGACAACTCCTGACAGGATCATCTCCATTTTTGGATGGTCAGAGAAGCCAAGCAGAATAAAACCATGTAAAGAACTATAATTGCTTTGGTCCATAGTCCTTC---AATGTCTAAATCCTAGAGTGagaaaaggaggagg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74341099 979 + 122973662 TTGTAGATTCGTGGTGAAAT--------CTCATCAGTTTCTTCAGGGCATCCTTCATGTCCTTATTTCTTAAGGTGTAAATGAGCGGGTTGAGACTTGGAGTGATGATGGTGTAAAAGAGGGTGAGGAACTTGTCCTGGTCTTTGGAAGCCCTGTTACCTGGTTGCAGGTATATGTAGATAATAGTTCCATAGAATATAGACACTACAGTAATATGAGATCCACAGGTATTCGTTGCTTTTCGCTGGCCTGCTTTTGACTTCATTCTCAGCACAGCTTTGGCAATGTAGCCATAGGATATAAGAATAAGGATGAGAGGTGTGAGGACAATTATAATGCCTAAAGCGAAAACAGACATTTCAACTGTTGTGGTGTCTACACAAGCTATCTTGACCAGAGCTGGCAACTCACACAAGAAGTGATCCAGAAGGTTGTTTCCACATGTGGGCAAATTCAGAGTGAGTGTACATAATACTACAGAATTGGCCAAACTAATACTCCAGATCATGACAATCATCTTTAGACATAGATGTGGGTTCATGATTACAAAATAATGCAAGGGCTTACATACAGCTGTAAAACGATCATAGGACATAACAGCCAGGAGAAGGCACTCAACTGAGCCCAACCACATGTAAACATAGAGTTGGATGATACAGCCCACATAGCTGATGGTCTTATCAGGTCCCCACAAGCTGACCAGCATCTGAGGGATGATGCTGGTTGTGAAGCATAGATCTAGGAAAGATAAATTTCTGAGGAAAAAGTACATTGGTATATGAAGCTGGGAATCCAGGAGAGATGCAAGAATGATGGCTGTGTTACCCACCAATGTAATTAAGTAGAAGATGGCGACAACTCCTGACAGAATCATCTCCATTTTTGGATGGTCAGAGAAGCCAAGCAGAATAAAACCATGTAAAGAACTATAATTGCTTTGGTCCATAGTCCTTC---AATGTCTAAATCCTAGAGTGAGAAAaggaggagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29497153 979 + 172585720 TTGTAGATTTGTGGTGAAAT--------CTCATCAGTTTCTTCAGGGCATCCTTCATGTCCTTATTTCTTAAGGTGTAAATGAGCGGGTTGAGACTTGGAGTGATGATGGTGTAAAAGAGGGTAAGGAACTTGCCCTGGTCTTTGGAAGCACTGTTACCTGGTTGCAGGTACATGTAGATAATAGTTCCATAGAATATAGACACTACAGTAAGATGAGATCCACAGGTATTCATTGCTTTTCTCTGGCCTGCTTTTGACTTCATTCTCAGCACAGCTTTGGCAATGTAGCCATAGGATATAAGAATAAGGATGAGAGGTGTGAGGACAATTATAATGCCTAAAGTGAAAACAGACATTTCAACTGTTGTGGTATCTACACAAGCTATCTTGACCAGAGCTGGCAACTCACACAAGAAATGATCCAGAAGGTTGTTTCCACATGTGGGCAAATTCAGAGTGAGTGTACACAGTACTACAGAATTGGCCATACTAATACTCCAGACCATGATAATCATCTTTAGACATAGATGTGGGTTCATGATTACAAAATAATGCAAAGGCTTACATATAGCTGTAAAACGATCATAGGACATAACAGCCAGAAGAAGGCACTCAATTGAGCCCAACCACATGTAAACATAGAGTTGGATGATACAGCCCACATAACTGATGGTCTTATCAGGTCCCCACAAGTTGACCAGCATCTGAGGGATGATGCTGGTTGTGAAACATAGATCTAGGAAAGATAAATTTCTGAGGAAAAAGTACATTGGTGTATGAAGCTGGGAATCCAGGAGAGATGCGAGAATGATGGCTGTGTTACCCACCAATGTAATTAAGTAGAAGACGGCGACAACTCCTGACAGGATCATCTCCATTTTTGGATGGTCAGAGAAGCCAAGCAGAATAAAACCATGTAAAGAACTATAATTTCTTTGGTCCATAGTCCTTC---AATGTCTAAATCCTAGAGTGAGAAAaggaggagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29158268 979 - 170955103 TTGTAGATTTGTGGTGAAAT--------CTCATCAGTTTCTTCAGGGCATCCTTCATGTCCTTATTTCTTAAGGTGTAAATGAGCGGGTTGAGACTTGGAGTGATGATGGTGTAAAAGAGGGTAAGGAACTTGCCCTGGTCTTTGGAAGCACTGTTACCTGGTTGCAGGTACATGTAGATAATAGTTCCATAGAATATAGACACTACAGTAAGATGAGATCCACAGGTATTCATTGCTTTTCTCTGGCCTGCTTTTGACTTCATTCTCAGCACAGCTTTGGCAATGTAGCCATAGGATATAAGAATAAGGATGAGAGGTGTGAGGACAATTATAATGCCTAAAGTGAAAACAGACATTTCAACTGTTGTGGTATCTACACAAGCTATCTTGACCAGAGCTGGCAACTCACACAAGAAATGATCCAGAAGGTTGTTTCCACATGTGGGCAAATTCAGAGTGAGTGTACACAGTACTACAGAATTGGCCATACTAATACTCCAGACCATGATAATCATCTTTAGACATAGATGTGGGTTCATGATTACAAAATAATGCAAAGGCTTACATATAGCTGTAAAACGATCATAGGACATAACAGCCAGAAGAAGGCACTCAATTGAGCCCAACCACATGTAAACATAGAGTTGGATGATACAGCCCACATAACTGATGGTCTTATCAGGTCCCCACAAGTTGACCAGCATCTGAGGGATGATGCTGGTTGTGAAACATAGATCTAGGAAAGATAAATTTCTGAGGAAAAAGTACATTGGTGTATGAAGCTGGGAATCCAGGAGAGATGCGAGAATGATGGCTGTGTTACCCACCAATGTAATTAAGTAGAAGACGGCGACAACTCCTGACAGGATCATCTCCATTTTTGGATGGTCAGAGAAGCCAAGCAGAATAAAACCATGTAAAGAACTATAATTTCTTTGGTCCATAGTCCTTC---AATGTCTAAATCCTagagtgagaaaaggaggagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2150592 979 -   2996164 TTGTAGATTTGTGGTGAAAT--------CTCATCAGTTTCTTCAGGGCATCCTTCATGTCCTTATTTCTTAAGGTGTAAATGAGTGGGTTGAGACTTGGAGTGATGATGGTGTAAAAGAGGGTAAGGAACTTGCCCTGGTCTTTGGAAGCACTGTTACCTGGTTGCAGGTACATGTAGATAATAGTTCCATAGAATATAGACACTACAGTAAGATGAGATCCACAGGTATTCATTGCTTTTCTCTGGCCTGCTTTTGACTTCATTCTCAGCACAGCTTTGGCAATGTAGCCATAGGATATAAGAATAAGGATGAGAGGTGTGAGGACAATTATAATGCCTAAAGTGAAAACAGACATTTCAACTGTTGTGGTATCTACACAAGCTATCTTGACCAGAGCTGGCAACTCACACAAGAAATGATCCAGAAGGTTGTTTCCACATGTGGGCAAATTCAGAGTGAGTGTACACAGTACTACAGAATTGGCCATACTAATACTCCAGACCATGATAATCATCTTTAGACATAGATGTGGGTTCATGATTACAAAATAATGCAAAGGCTTACATATAGCTGTAAAACGATCATAGGACATAACAGCCAGGAGAAGGCACTCAATTGAGCCCAACCACATGTAAACATAGAGTTGGATGATACAGCCCACATAACTGATGGTCTTATCAGGTCCCCACAAGTTGACCAGCATCTGAGGGATGATGCTGGTTGTGAAACATAGATCTAGGAAAGATAAATTTCTGAGGAAAAAGTACATTGGTGTATGAAGTTGGGAATCCAGGAGAGATGCGAGAATGATGGCTGTGTTACCCACCAATGTAATTAAGTAGAAGACGGCGACAACTCCTGACAGGATCATCTCCATTTTTGGATGGTCAGAGAAGCCAAGCAGAATAAAACCATGTAAAGAACTATAATTTCTTTGGTCCATAGTCCTTC---AATGTCTAAATCCTagagtgagaaaaggaggagg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2031357 979 -   2157725 TTGTAGATTTGTGGTGAAAT--------CTCATCAGTTTCTTCAGGGCATCCTTCATGTCCTTATTTCTTAAGGTGTAAATGAGCGGGTTGAGACTTGGAGTGACGATGGTGTAAAAGAGGGTGAGGAACTTGCCCTGGTATTTGGAAGCACTGTTACCTGGTTGCAGGTACATGTAGATAATAGTTCCATAAAATATAGACACTACAGTAAGATGAGATCCACAGGTATTCATTGCTTTTCTCTGGCCTGCTTTTGACTTCATTCTCAGCACAGCTTTGGCAATGTAGCCATAGGATATAAGAATAAGGATGAGAGGTGTGAGGACAATTATAATGCCTAAAGTGAAAACAGACATTTCAACTGTTGTGGTGTCTACACAAGCTATCTTGACCAGAGCTGGCAACTCACACAAGAAATGATCCAGAAGGTTGTTTCCACATGTGGGCAAATTCAGAGTGAGGGTACATAGTACTACAGAATTGGCCATACTAATACTCCAGACCATGATAATCATCTTTAGACATAGATATGGGTTCATGATTACAAAATAATGCAAAGGCTTACATATAGCTGTAAAACGATCATAGGACATAACAGCCAGGAGAAGGCACTCAATTGAGCCCAACCACATGTAAACATAGAGTTGGATGATACAGCCCACATAACTGATGGTCTTATCAGGTCCCCACAAGTTGACCAGCATCTGAGGGATGATGCTGGTTGTGAAACATAGATCTAGGAAAGATAAATTTCTGAGGAAAAAGTACATTGGTGTATGAAGCTGGGAATCCAGGAGAGATGCGAGAATGATGGCTGTGTTACCCACCAATGTAATTAAGTAGAAGATGGCGACGACTCCTGACAGGATCATCTCCATTTTTGGATGGTCAGAGAAGCCAAGCAGAATAAAACCATGTAAAGAACTATAATTCCTTTGATCCATAGTCCTTC---AATGTCTAAATCCTagagtgagaaaaggaggagg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28461738 979 -  71996105 TTGTAGATTTGTGGTGAAAT--------CTCATCAGTTTCTTCAGGGCATCCTTCATGTCCTTATTTCTTAAGGTGTAAATGAGCGGGTTGAGACTTGGAGTGATGATGGTGTAAAAGAGGGTAAGGAACTTGCCCTGGTCTTTGGAAGCACTGTTACCTGGTTGCAGGTACATGTAGATAATAGTTCCATAGAATATAGACACTACAGTAAGATGAGATCCACAGGTATTCATTGCTTTTCTCTGGCCTGCTTTTGACTTCATTCTCAGCACAGCTTTGGCAATGTAGCCATAGGATATAAGAATAAGGATGAGAGGTGTGAGGACAATTATAATGCCTAAAGTGAAAACAGACATTTCAACTGTTGTGGTGTCTACACAAGCTATCTTGACCAGAGCTGGCAACTCACACAAGAAATGATCCAGAAGGTTGTTTCCACATGTGGGCAAATTCAGAGTGAGTGTACACAGTACTACAGAATTGGCCATACTAATACTCCAGACCATGATAATCATCTTTAGACATAGATGTGGGTTCATGATTACAAAATAATGCAAAGGCTTACATATAGCTGTAAAACGATCATAGGACATAACAGCCAGGAGAAGGCACTCAATTGAGCCCAACCACATGTAAACATAGAGTTGGATGATACAGCCCACATAACTGATGGTCTTATCAGGTCCCCACAAGTTGACCAGCATCTGAGGGATGATGCTGGTTGTGAAACATAGATCTAGGAAAGATAAATTTCTGAGGAAAAAGTACATTGGTGTATGAAGCTGGGAATCCAGGAGAGATGCGAAAATGATGGCTGTGTTACCCACCAATGTAATTAAGTAGAAGATGGTGACAACTCCTGACAGGATCATCTCCATTTTTGGATGGTCAGAGAAGCCAAGTAGAATAAAACCATGTAAAGAACTATAATTTCTTTGGTCCATAGTCCTTC---AATGTCTAAATCCTagagtgagaaaaggaggagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2169229 979 +   2316924 TTGTAGATTTGTGGTGAAAT--------CTCATCAGTTTCTTCAGGGCATCCTTCATGTCCTTATTTCTTAAGGTGTAAATGAGCGGGTTGAGACTTGGAGTGACGATGGTGTAAAAGAGGGTGAGGAACTTGCCCTGGTATTTGGAAGCACTGTTACCTGGTTGCAGGTACATGTAGATAATAGTTCCATAAAATATAGACACTACAGTAAGATGAGATCCACAGGTATTCATTGCTTTTCTCTGGCCTGCTTTTGACTTCATTCTCAGCACAGCTTTGGCAATGTAGCCATAGGATATAAGAATAAGGATGAGAGGTGTGAGGACAATTATAATGCCTAAAGTGAAAACAGACATTTCAACTGTTGTGGTGTCTACACAAGCTATCTTGACCAGAGCTGGCAACTCACACAAGAAATGATCCAGAAGGTTGTTTCCACATGTGGGCAAATTCAGAGTGAGGGTACATAGTACTACAGAATTGGCCATACTAATACTCCAGACCATGATAATCATCTTTAGACATAGATATGGGTTCATGATTACAAAATAATGCAAAGGCTTACATATAGCTGTAAAACGATCATAGGACATAACAGCCAGGAGAAGGCACTCAATTGAGCCCAACCACATGTAAACATAGAGTTGGATGATACAGCCCACATAACTGATGGTCTTATCAGGTCCCCACAAGTTGACCAGCATCTGAGGGATGATGCTGGTTGTGAAACATAGATCTAGGAAAGATAAATTTCTGAGGAAAAAGTACATTGGTGTATGAAGCTGGGAATCCAGGAGAGATGCAAGAATGATGGCTGTGTTACCCACAAATGTAATTAAGTAGAAGATGGCGACAACTCCTGACAGGATCATCTCCATTTTTGGATGGTCAGAGAAGCCAAGCAGAATAAAACCATGTAAAGAACTATAATTCCTTTGGTCCATAGTCCTTC---AATGTCTAAATCCTAGAGTGAGAAAaggaggagg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2033602 976 -   3067355 TTGTAGATTTGTGGTGAAAC--------CTCATCAGTTTCTTCAGGGCATCCTTCATGTCCTTATTTCTTAAGGTGTAAATGAGCGGGTTGAGACTTGGAGTGATGATAGTGTAAAAGAGGGTGAGGAACTTGCCCTGGTCTTTGGAAGCACTGTTACCTGGTTGCAGGTACATGTAGATAATAGTTCCATAGAATAGAGACACTACAGTAAGATGAGATCCACAGGTATTCATTGCTTTTCTCTGGCCTGCTTTTGACTTCATTCTCAGCACAGCTTTGGCAATGTGGCCATAGGATATAAGGATAAGGATGAGAGGTGTTAGGACAATTATAATGCCTAAAGTGAAAACAGACATTTCAACTGTTGTGGTGTCTACACAAGCTATCTTGACCAGAGCTGGCAACTCACACAAGAAATGATCCAGAAGGTTGTTTCCACATGTGGGCAAATTCAGAGTGAGTGTACATAGTACTACAGAATTGATCATACTAATACTCCAGACCATGATAATCATCTTTAGACATAGATGTGGGTTCATGATTACAAAATAATGCAAAGGCTTACATATAGCTGTAAAACGATCATAGGACATAACAGCCAGGAGAAGGCACTCAATTGAGCCCAACCACATGTAAACATAGAGTTGGATGATACAGCCCACATAACTGATGGTCTTATCAGGTCCCCACAAGTTGACCAGCATCTGAGGGATGATGCTGGTTGTGAAACATAGATCTAAGAAAGATAAATTTCTGAGGAAAAAGTACATTGGTGTATGAAGCTGGGAATCCAGGAGAGATGCGAGAATGATGGCTGTGTTACCCACCAATGTAATTAAGTAGAAGACGGCGACAGCTCCTGACAGGATCATCTCCATTTTTGGATGGTCAGAGAAGCCAAGCAGAATAAAACCATGTAAAGAACTATAATTTCTTTGGTCCATAGTTCTTC---AATGTCTAAATCCTAGAGTGAgaa---gaggagg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171552589 979 - 171630274 TTGTAGATTTGTGGTGAAAT--------CTCATTAGTTTCTTCAGGGCATCCTTCATGTCCTTATTTCTTAAGGTATAAATGAGCGGGTTGAGACTTGGAGTGATGATGGTGTAAAAGAGGGTGAGGAACTTGCCCCGGTCTTTGGAAGCACTGTTACCTGGTTGCAGGTACATGTAGATAATAGTTCCATAGAAGATGGACACCACGGTAAGATGAGATCCACAGGTATTCACTGCTTTTTGCTGGCCTGCTTTTGACTTCATTCTCAGCACAGCTTTGACAATGTAGGCATATGATATAAGAATAAGGATGAGAGGTGTGAGGACAATTACAATGCCTAAAGCAAAAACAGACATTTCAACTGTTGTGGTGTCCACGCAAGCTATCTTGACCATAGCTGGCAACTCACACAAGAAATGATCTAAAAGGTTGTTTCCACATGTGGGCAAATTCAGAGTGAGTGTACATAATACTACAGAATTGGCCAAACTAATACTCCAGACCATGATGATCATCTGTAGGCATAGGTGTGGGTTCATGATGGCAAAATAATGCAAGGGCTTACATACAGCTATAAAACGATCGTAGGACATCACAGCCAGGAGAAGGCACTCAGTTGAGCCCAACCACATATAAACATACAGTTGAATGATACAACCCACATAGCTGATGGTCTTATCAGGTCCCCACAAGTTGACCAGCATCTGAGGGATGATGCTGGTTGTGAAACATAGATCTAGGAAAGATAAGTTTCTGAGGAAAAAGTACATTGGTGTATAAAGCTGAGAATCCAGGAGAGAGGCAAGAATGACGGCTGTGTTACCCACCAGTGTAATTGAGTAGAAGATGGTGACAACTCCTGACAGAATCATCTCCGTTTTGGGATGGTCAGAGAAGCCAAGCAGAATAAAGTCGTGTAAAGAGCAATAGTTGCGTTGGTCCATAGTCCTTC---AATGTCTAAATCTTAGAGTGAGAAGAGGAGGAGG
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1659865 978 -   2232465 TTATAGATTTATGGTGAAAT--------CTCACTAGCCTCTTCAGTGCATCCTTCATGTCCTTATTCCTTAAGGTATAAATGAGGGGGTTGAGACTTGGAGTGATGATGGTGTAAAAGAGGGTGAGAAATTTTCCCTGGTCTTTGGAGGCACTATTACCTGGTTGCAGGTACATGTAAATAATAGTTCCATAGAAGATGGACACCACGGTAAGATGAGATCCACAGGTATTTATTGCTTTCCGTTGGCCTGCTTTTGAATTCATTCTCAGCACAGCTTTGGCAATGTAGCCATAAGATATTAGAATAAGAATGAGGGGTGTGAGGACAATGACAATCCCTAAAGCAAAAACCGACATTTCAACTGTTGTGGTGTCTACACAAGCTATCTTGACCATAGCTGGCAACTCACATAAGAAATGATCCAAAAGGTTATTTCCACATGTAGGCAAATTCAGGGTTAGTGTACATAATACTACAGAATTGGCCAAACTAATACTCCAGACCAGGATAATCATCTTGAGACACAGATGCGGGTTCATGATTACAAAATAATGTAAGGGCTTACATATAGCTGTAAAACGATCATAAGACATAACAGCAAGGAGGAGGCACTCAATGGAGCCCAACCACATATAAACATAGAGTTGAATGACACAACCCACATAGCTGATGGTTTTATCAGGTCCCCACAAGTTAACCAGCATCTGAGGGATGATGCTGGTTGTGAAGCATAGATCTAGGAAAGATAAATTCCTGAGGAAAAAGTACATTGGTGTGTGGAGATGGGAATCCAGGAGGGAAGCAAGAATGATGGCTGTATTACCTACCAATGTAATTAAGTAGAACACAGTAACAACTCCTGATAGGATTACCTCCAGTTTAGGATGGTCGGAGAAGCCAAGCAGAATGAAACCATGTAAAGAACTATAATTGCTTTGGTCCATAGTCCTTC---AATGCTTAAATCCTAGAGTGAGAA-agaaggagg
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26118361 978 +  26524999 TTGTAGATTCAT-GTCAACT--------CTCACCAGCTTCCTCAATGCATTCTTCATGTCCTTATTCCGTAGGGTATAAATGAGAGGATTCAGACTTGGAGTGATGATCGTGTAAAAGAGGGTGAGGAACTTGCCCTGGTCTAAGGAGGCACTGTTACCTGGTTGTAGGTACATGTAGATTATAGTTCCATAGAAGATGGACACAACAGTGAGATGAGATCCACAAGTATTCATTGATTTTTTTCGGCCTGCTTTTGACTTTATTCTCAGCACAGCTTTGGCAATGTAGCCATAGGATAGAAGAATAAGGCTGAGGGGTGTAAGGACAAAGACAATGCCTAAAGCAAAAACAGACATTTCAACTGTTGTAGTGTCTATACAAGCTATTTTGACTATAGCTGGCAACTCACACAGGAAATGGTCCAGAAGGTTGTTTCCACATCGAGGCAAATTCAGGGTGAGTGTACACAATGCTACCGAATTGGCCAAACTAATGCTCCAGACTGTGATTATTATCTTGAGACAGAAATGTGGGTTCATGATTATCAAATAATGCAAAGGCTTACAGATAGCTGTGAAGCGATCATAGGACATAACAGCTAGGAGGAGGCATTCGGTGGAACCCAACCACATATAAATATAGAGTTGAATGACACAGCCTATATAGCTAATGGTCTTGTCAGGTCCCCACAAGTTAACCAGCATCTGAGGGATGATGCTGGTTGTGAAGCATAGATCCAGGAAAGATAAATTCCTGAGGAAAAAATACATTGGTGTATGGAGACAGGAATCCAGGAGAGATGCAATGATGATGGCTGTGTTACCCACCCATGTAATGAAGTAAAAGACAGTGACAACTCCTGATAGCACCATCTCCAGTTTGGGATAGTCAGAGAAACCAAGTAAAACAAAACCGTGTAGAGAAGTATAATTGTTTTGGTCCATAGTCCACT---AATGCTCAAATCCTAGAATGAGAAGAGCAGGAGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH561790            190651 990 -    302817 TCATAAATTTGTGGAACACTTTTCTCTCCTCAGTATTCTCTTTACTGCACTCTTTACATCTTTGTTTCTTAAAGTATAGATCAGAGGGTTGAGGCTGGGTGTGACAATTGTGTAAAAGAGAGAAAGGAACTTGCCCTCATCTTGGGATGTGCTATTCTGTGGCTTCATGTACATGTAAATGATTGTTCCATAAAACATAGTTACGATTGTGAGGTGAGAACCACATGTATTCAGGACCTTATGCCACCTTGCTGGTGACCTGATCCGCATGACAGCTTGAGTGATAACTGCATATGAGATAAGAATCAGTGATAGAGGTACTAGGAGAAAAATGACTCCAAGTGCAGAGACGACAATCTCAACCATTTTTGAATAGACACAAGCCATCTTGACCAAGGCTGGCATCTCACAGAAAAAATTATCTACCTCCCTGTGTCCACACCTTGGCAACTTCAAAGTCAAGGAACAAAGGATTAGGGCACTGCCAAGACCGCCCGACCAGGCAGACAGCACCATCTTCTGGCAGAGCTGGGGATGCATTATTACTGTGTACTGAAGAGGCTGGCAGACAGCTGCGTAGCAGTCATAGGCCATCACCGCCAAGAGAAGACACTCTGTGGCTCCCAGGTCAAGGGCAAAGAAAAACTGGAGCACACACCCTCCATAGGTAATAGACTTTTTTGGACCCCAGAGGTTTACCAGCATCTGTGGGATAATGCTGGTTGTATAACAGAGGTCCACAAAAGAGAGATTGGATAAGAAGAAATACATGGGGGTGCGCAGGTGGGTGTCCAGGTGAGATACGAGAATGATGGTTGTGTTTCCTATCAGAGTCCCAATATAGAAGAAGAAAACAACCACAGAGATGACGAGCTCTAATTGGGGTCGATCAGAAAACCCCAGGAGGATGAAGTCTGTTTCAGAACTTCCATTGCCTGTTTCCATTGCTTCTCATGAAAGGCTAGATTATACTATGGTAAACAGAAATGG
i dasNov3.JH561790         I 8519 N 0

a score=10340.000000
s hg38.chr6_GL000254v2_alt    310959 7 +   4827813 -aggaggt
s panTro5.chr6              29285998 8 + 175400573 gaggaggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29532183 8 + 173848474 gaggaggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5329204 7 +   6154872 -aggaggt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74342078 7 + 122973662 -agaaggt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29498132 4 + 172585720 ----aggt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29159247 4 - 170955103 ----aggt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2151571 4 -   2996164 ----aggt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2032336 4 -   2157725 ----aggt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28462717 4 -  71996105 ----aggt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2170208 4 +   2316924 ----aggt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2034578 4 -   3067355 ----aggt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171553568 4 - 171630274 ----AAGG
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26119339 4 +  26524999 ----TGAA
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742           1660843 0 -   2232465 C

a score=3887880.000000
s hg38.chr6_GL000254v2_alt    310966 489 +   4827813 agatgatgatacaaggataaggagaaggaagaagaaggaagaagaggtagaggaggagaaggaggagggagaggaagaagaaaaggaaaagaggaagaaACAGTTTGTCAACATGAACTATC-------TAAATAATTTGATAAAAT-TAGAACTAAACAAA----GATAATTTATGTTACTAATTGAAAAAATTTAATGGATAAAAGTAAAAATTACAGCCAAGAAATCTGCTATTTGTCATAGATTCTTTTATGGCAATGAGTTTAATATTAGATTTT-TT-AAAAAAAATCCAGgtgaccttggggagttcacttttaaacttgaggtctg-aattatctaacg-------tgtagatttgaa-----agtttgaaatagatgctggttctaaaatg-----accctATGATTCTT-TAT-AAGCTAGTTAGCTTGATAAAATGAACATATTCTTTTATTTGATCAGTAAATTCACCTATAAAATTTAAGTACTGGGCTAATGGTAGGATGAGGAAAAGA
s panTro5.chr6              29286006 494 + 175400573 agatgatgatacaaggataaggagaaggaagaagaaggaagaagaggtagaggaggagaaggaggagggagaggaagaagaaaaggaaaagaggaagaaACAATTTGTCAACATGAACTATC-------TAAATAATTTGATAAAATATAGAACTAAACAAAAAGAGATAATTTATGTTACTAATTGAAAAAATTTAATGGATAAAAGTAAAAATTACAGCCAAGAAATCTGCTATTTGTCATAGATTCTTTTATGGCAATGAGTTTAATATTAGATTTT-TT-TAAAAAAATCCAGGTGACCTTGGGGAGTTCACTTTTAAACTTGAGGTCTG-AATTATCTAACG-------TGTAGCTTTGAA-----AGTTTGAAATAGATGCTGGTTCTAAAATG-----ACCCTATGATTCTT-TAT-AAGCTAGTTAGCTTGATAAAATGAACATATTCTTTTATTTGATCAATAAATTCACCTATAAAATTTAAGTACTGGGCTAATGGTAGTATGAGGAAAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29532191 493 + 173848474 agatgatgatacatggataaggagaaggaagaagaaggaagaagaggtagaggaggagaaggaggagggagaggaagaagaaaaggaaaagaggaagaaACAATTTGTCAACATGAACTATC-------TAAATAATTTGATAAAATATAGAACTAAACAAAAAGAGATAATTTATGTTACTAATTGAAAAAATTTAATGGATAAAAGTAAAAATTACAGCCAAGAAATCTGCTATTTGTCATAGATTCTTTTATGGCAATGAGTTTAATATTAGATTTT-TT--AAAAAAATCCAGGTGACCTTGGGGAGTTCACTTTTAAACTTGAGGTCTG-AATTATCTAACG-------TGTAACTTTGAA-----AGTTTGAAATAGATGCTGGTTCTAAAATG-----ACCCTATGATTCTT-TAT-AAGCTAGTTAGCTTGATAAAATGAACATATTCTTTTATTTGATCAATAAATTCACCTATAAAATTTAAGTTCTGGGCTAATGGTAGGATGAGGAAAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5329211 495 +   6154872 agatgatgatacaaggataaggagaaggaagaagaaggaagaagaggtagaggaggagaaggaggagggagaggaagaagaaaaggaaaagaggaagaaACAATTTGTCAACATGAACTATC-------TAAATAATTTGATAAAATATAGAACTAAACAAAGAGAGATAATTTATGTTACTAATTGAAAAAATTTAATGGATAAAAGTAAAAATTACAGCCAAGAAATCTGCTATTTGTCATAGATTCTTTTATGGCAATGAGTTTAATATTAGATTTT-TTTAAAAAAAATCCAGGTGACCATGGGGAGTTCACTTTTAAACTTGAGGTCTG-AATTATCTAACG-------TGTAGATTTGAA-----AGTTTGAAATAGATGCTGGTTCTAAAATG-----ACCCTATGATTCTT-TAT-AAGCTAGTTAGCTTGATAAAATGAACATATTCTTTTATTTGATCAGTAAATTCACCTATAAAATTTAAGTACTGGGCTAATGGTAGGATGAGGAAAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74342085 482 + 122973662 agatgacgatacaaggataaggagaaggaagaagaggta-------gaggaggaggaggaggaggagggagaggaagaagaaaaggaaaagaggaagaAACAATCTGTCAGCATGAACTATC-------TAAATAATTTGATAAAATATAGAACTAAACA------GATAATTTATGTTACTAATTGAAAAAATTTAATGGATAAAAGTAAAAATTACAGCCAAGAAATCTGCTATTTGTCATATATTGTTTTATGGCAATGAGTTTAATATTAGATTTT-TTTTTTTTAAATCCAAGTGACCATGGAGAGTTCATTTTTAAACTTGAGGTCTG-AATTATCTCACG-------TGCAGATTTGAA-----AGTTTGAAATAGATGCTGGTTCTAAAATG-----ACCCTGTGATTCTT-TAT-AAGCTAGTTAGCTTGATACAATGAACATATTCTTTTATTTGATCAGTAAATTCACCTATAAAATTTAAGTGCTGGGTTAGTGGTAGGATGAGGAAAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29498136 486 + 172585720 agatgatcatacgaggataaggagaaggaagaagaaggaagaagaggta------gaggaggaggagggagaggaagaagaaaaggaaaagaggaagaaACAATTTGTCAACATGAACTATC-------TAAATAATTTGATAAAATATAGAACTAAACAAAGGGTGATAATTTATGTTACTAATTGAAAAAATTTAATGGATAAAAGTAAAAATTACAGCCAAGAAATCTGCTATTTGTCATAGATTCTTTTATGGCAATAAGTTTAATATTAGATTTT-TT---AAAAAATCCAGGTGACCATGGGGAGTACACTTTTAAACTTGAGGTCTG-AATTATCTCACG-------TGTAGATTTGAA-----AGTTTGAAATAGATGCTGGTTCTAAAATG-----ACCCTATGATTCTT-TAT-AAGCTAGTTAGCCTGATAAAATGAACATATTCTTTTATTTAACCAGTAAATTCATCTGTAAAATTTAAGTACTGGGCTAATGGTAGGATGAGGAAAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29159251 486 - 170955103 agatgatcatacgaggataaggagaaggaagaagaaggaagaagaggta------gaggaggaggagggagaggaagaagaaaaggaaaagaggaagaaACAATTTGTCAACATGAACTATC-------TAAATAATTTGATAAAATATAGAACTAAACAAAGGGCGATAATTTATGTTACTAATTGAAAAAATTTAATGGATAAAAGTAAAAATTACAGCCAAGAAATCTGCTATTTGTCATAGATTCTTTTATGGCAATGAGTTTAATATTAGATTTT-TT---AAAAAATCCAGGTGACCATGGGGAGTACACTTTTAAACTTGAGGTCTG-AATTATCTCACG-------TGTAGATTTGAA-----AGTTTGAAATAGATGCTGGTTCTAAAATG-----ACCCTATGATTCTT-TAT-AAGCTAGTTAGCCTGATAAAATGAACATATTCTTTTATTTAACCAGTAAATTCATCTGTAAAATTTAAGTACTGGGCTAATGGTAGGATGAGGAAAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2151575 486 -   2996164 agatgatcatacgaggataaggagaaggaagaagaaggaagaagaggta------gaggaggaggagggagaggaagaagaaaaggaaaagaggaagaaACAATTTGTCAACATGAACTATC-------TAAATAATTTGATAAAATATAGAACTAAACAAAGGGCGATAATTTATGTTACTAATTGAAAAAATTTAATGGATAAAAGTAAAAATTACAGCCAAGAAATCTGCTATTTGTCATAGATTCTTTTATGGCAATGAGTTTAATATTAGATTTT-TT---AAAAAATCCAGGTGACCATGGGGAGTACACTTTTAAACTTGAGGTCTG-AATTATCTCACG-------TGTAGATTTGAA-----AGTTTGAAATAGATGCTGGATCTAAAATG-----ACCCTATGATTCTT-TAT-AAGCTAGTTAGCCTGATAAAATGAACATATTCTTTTATTTAACCAGTAAATTCATCTGTAAAATTTAAGTACTGGGCTAATGGTAGGATGAGGAAAAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2032340 490 -   2157725 agatgatgatgcgaggataaggagaaggaagaagaaggaagaagaggta---gaggaggaggaggaggaagaggaagaagaaaaggaaaagaggaagaaACAATTTGTCAACATGAACTATC-------TAAATAATTTGATAAAATATAGAACTAAACAAAGGGAGATAATTTATGTTACTAATTGAAAAAATTTAATGGATAAAAGTAAAAATTACAGCCAAGAAATCTGCTATTTGTCATAGATTCTTTTATGGCAATGAATTTAATATTAAATTTT-TT--AAAAAAATCCAGgtgaccatggggagttcacttttaagcttgaggtctg-aattatctcacg-------tgtagatttgaa-----agtttgaaatagatgctggttctaaaatg-----accctATGATTCTT-TGT-AAGCTAGTTAGCCTGATAAAATGAACATATTCTTTTATTTGATCAGTAAATTCACCCGTAAAATTTAAGTACTGGGCTAATGGTAGGATGAGGAAAAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28462721 486 -  71996105 agatgatcatacgaggataaggagaaggaagaagaaggaagaagaggta------gaggaggaggagggagaggaagaagaaaaggaaaagaggaagaaACAATTTGTCAACATGAACTATC-------TAAATAATTTGATAAAATATAGAACTAAACAAAGGGTGATAATTTATGTTACGAATTGAAAAAATTTAATGGATAAAAGTAAAAATTACAGCCAAGAAATCTGCTATTTGTCATAGATTCTTTTACGGCAATGAGTTTAATATTAGATTTT-TT---AAAAAATCCAGGTGACCATGGGGAGTTCACTTTTAAACTTGAGGTCTG-AATTATCTCACG-------TGTAGATTTGAA-----AGTTTGAAATAGATGCTGGTTCTAAAATG-----ACCCTATGATTCTT-TAT-AAGCTAGTTAGCCTGATAAAATGAACATATTCTTTTATTTGATCAGTAAATTCACCTGTAAAATTTAAGTACTGGGCTAATGGTAGGATGAGGAAAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2170212 493 +   2316924 agatgatgatgcgaggataaggagaaggaagaagaaggaagaagaggtagaggaggaggaggaggagggagaggaagaagaaaaggaaaagaggaagaAACAATTTGTCAACATGAACTATC-------TAAATAATTTAATAAAATATAGAACTAAACAAAGGGAGATAATTTATGTTACTAATTGAAAAAATTTAATGGATAAAAGTAAAAATTACAGCCAAGAAATCTGCTATTTGTCATAGATTCTTTTATGGCAATGAATTTAATATTAAATTTTAAA---AAAAAATCCAGgtgaccatggggagttcacttttaaacttgaggtctg-aattatctcacg-------tgtagatttgaa-----agtttgaaatagatgctggttctaaaatg-----accctATGATTCTT-TGT-AAGCTAGTTAGCCTGATAAAATGAACATATTCTTTTATTTGATCAGTAAATTCACCCGTAAAATTTAAGTACTGGGCTAATGGTAGGATGAGGAAAAGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2034582 489 -   3067355 agatgatgatacgaggataaggagaaggaagaagaaggaagaagaggta---gaggaggaggaggagggagaggaagaagaaaaggaaaagtggaagaaACAATTTGTCAACATGAACTATC-------TAAATAATTTGATAAAATACAGAACTAAACAAAGGGAGATAATTTATGTTACTAATTGAAAAAATTTAATGGATAAAAGTAAAAATTACAGCCAAGAAATCTGCTATTTGTCATAGATTCTTTTATGGCAATGAGTTTAATATTAGATTTT-TT---AAAAAATCCAGgtgaccatggggagttcacttttaaacttgaggtctg-aattatctcacc-------tgtagatttgaa-----agtttgaaatagatgctggttctaaaatg-----accctATGATTCTT-TAT-AAGCTAGTTAGCCTGATAAAATGAACATATTCTTTTATTTGATCAGTAAATTCACCTGTAAAATTGAAGTACTGGGCTAATGGTAGGATGAGGAAAAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171553572 472 - 171630274 AGATGATGATATGAGGTTaaggagaagaaagaagaaagaagaggaggta---------------gaggcggaggaagaagaaaaggaaaa---gaagaaTCAATTTGTCAACATG----ATC-------GAAATAATTTGATAAAATATAGAACTAAAGAGAGGGAGATAATTTATGTTACTAATTGAAAAAATTTAATGGATAAAAGTAAAAATTACAGCCAAGTAATCTGCTATTTGTTGCAGATTATTTTATGGCAATGAGTTTAATATTAGATTAA------AAAAAATTCAGGTGATCATGTGGAATTCACTCTTAAACTTGAGGTCTG-TATTATCTCA---------TGTAGATTTGCG-----AGTTTGAAATAGATCCTGCTTCTAAAATGATGTCACCCTATGATTCTT-TATAAAGATAGTTAGCTTGATAAAATGAACATATTCTTTTATTTGATCAGTAAATTCACCTATAAAATGTAACTACTGGGCTACCAGTAGAATGCGGAAAAGA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1660843 448 -   2232465 -------------aggaaatggaggaggaggatg-ggaaggaagggata-------aggaagagaaggaggaagaggagcaaggggaggaggTGAAGAAATAATTTGTCAACATGAACTATC-------TAAGTAATTTGATGAAATACAGAACTAAAGAAAGGGAGAGAATTTATGATAGTAATTGAAAAAATTAATAGGTAAAAAGTAAAAGTTATAGCTAGGCACT-TGGTATTTATTGTAGATTCTTTTGTGGC-ATGAGTTT--------------AT------------AGGTGACCTTGAGGAGTTCACTC--AAAGTCGAGGTCTG-AATTTTCTCACT-------TGAAAATTTGAA-----AGTTTGATATAGATCTT---TTTAAAATGATGTGACTCTATGATACTT-TATAAAGCTAGCCAACTTGATACAGTGAATATATTCTTTTACTTGATCAATGAATTCACCTATATAATTTAACTATATGGCTAATGTCCAAATGAGGAAAAGA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26119343 447 +  26524999 GGA-----ATACGGGGATGAAGACAATgaggaa----------------------gaggagcagaaggagcaagaagaagagaaggagaaagaagaggagaaATCTGTCAATACAGACtat-----------ataattt----aaatacaaaatttta-aaaaggatataatttatgttaataatttaaaaa---taatGGGCAAAAG----AATTACAGCCAAGTAATTTGGTATTTGTTGTAGA-TCTTTTATAGTGATGAGTTTCATAATATATTTT-TA---------TCTAAGTGAGTTTGGTGAGTTTACTCTTAAACTCAAGGTCTG-AAATTTCTCACA-------TATAAGTTTGGA-----AGTTTGGAATAGAC-CTGGTTCTAAAATGACGCGACCCTTTGATTCTC-TACAAATCTTCCAGGCTTGATATAGTGAAAAGACTCTTTTACTTGGTCATTAAATTCACCTAAAGAATGTAATTATTTTGCTAATGTCAGAATGAGTAAAAGA
i canFam3.chr35            C 0 I 2942
s dasNov3.JH570037            243851 471 -    859332 --------------ggacagtgagtaagaggaaggaagaagaagacg--------gaaataaaggaggggagggaggtggaggaggcagtggaagagaaggaATTTGTCAATGCAGATTACCAAAAAAAAAAAAAAAAGAATGAAATATATATCTAAACA------GAAAATGCATGTTAAT--TTTAAAAA--TCAATGGATACAA-TAGAAATTACAGTCAAGTAATCTTGAATTTATTGCAGATTCTTTTATGGTAATGAGTTTAATATTAGATTTT-TA---ATTTTATCTAGTTGACCTTG-GGAATTCATTCTTAAACTGAGGGTCTGAAATTTTCTCACAAGGAAATTATAGTTTGGAATATGTAACTTGGAATAGAT-CTGGTTGTAAAAGA-----A---TGTGATTTTTCTATCAAGCTACTTA-CTTGATGTATTGAACATTTTCTTTTACTTGGTCAGAGAATTCACCTATAAAATCTA----TTTGGCTAATGTCAGAATGAGGAAAAGA
i dasNov3.JH570037         N 0 I 1448

a score=5435703.000000
s hg38.chr6_GL000254v2_alt    311455 798 +   4827813 tgtgat-aacctggaggatgaacctgg-ggacatcatgctaactgaagtaagct-------gaaagac---------aaatattgcatgatttcatttatatatggaatccaaaaaagttgaactcatagaggtagagagt--g---------------ggggcaggagatgga----tgggaaaaggggagatgttgatc-aagggtactaagtttcagttagaaaaaaggaaccagttttagtgatctcacagaatggtgactacaataaacaataatgcattgtttatttcaaaa----------------ttact--aagagtagattttaagtgttttcaccacaaaa----aataagtatgttaggtgatgggtttgttaattagcctgatttaatcattacacattataaacatatattaaaacattatattgcaccccataaacatatacaattgttgc---ttaattaaaaataaaCCTTAAAAAAGAGTGAGG-AAAGATTGTTCTt---ttttcatatcttagtgactaagcacctttgatctcctagtttgttatgtaggacatctggtgtttacccttggacgctttgtctctctcattcttaacgc----cttatcaccaaaactggtaaatttggatgc-aaatatatatgctaattatcctatcactttaaaaaatccctaccaccacaaccctaattcaaatcactatgatttcttttctggattctggcaatagtcttgcatccagtcc-------------ttgcatccagtcttatgcctttacattgttacaacatttgatgaaatcatgtcatccatctccttaaaacttgtcagccactttacactacatttaagaaatact
s panTro5.chr6              29286500 800 + 175400573 tgtgat-aacctggaggatgaacctgg-ggacatcatgctaactgaagtaagct-------gaaagac---------aaatattgcatgatttcatttatatatggaatccaaaaaagttgaactcatagaggtagagagt--g---------------ggggcaggagatgga----tgggaaaaggggagatgttgatc-aagggtactaagtttcagttagaaaaaaggaaccagttttagtgatctcacagaatggtgactacaataaacaataatgcattgtttatttcaaaa----------------ttact--aagagtagattttaagtgttttcaccacaaaa----aataagtatgttaggtgatgggtttgttaattagcctgatttaatcattacacattataaacatatattaaaacattatattgcaccccataaacatatacaattgttgc---ttaattaaaaataaaCCTTAAAAAAGAGTGAGG-AAAGATtgttcttcttttttcatatcttagtgactaagcacctttgatctcctagtttgttatgtaggacatctggtgtttacccttggacgctttgtctctctcattcttaacgc----cttatcaccaaaactggtaaatttggatgc-aaatatatatgctaattatcctatcactttaaaaaatccctaccaccacaaccctaattcaaatcactatgatttcttttctggattctc-caatagtcttgcatccagtcc-------------ttgcatccagtcttatgcctttacattgttacaacatttgatgaaatcatgtcatccatctccttaaaacttgtcagccactttacactacatttaagaaatact
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29532684 800 + 173848474 tgtgat-aacctggaggatgaacctgg-ggacatcatgctaactgaagtaagct-------gaaagac---------aaatattgcatgatttcatttatatatggaatccaaaaaagttgaactcatagaggtagagagt--g---------------ggggcaggagatgga----tgggaaaaggggagatgctgatc-aagggtactaagtttcagttagaaaagaggaaccagttttagtgatctcacagaatggtgactacaataaacaataatgcattgtttatttcaaaa----------------ttact--gagagtagattttaagtgttttcaccacaaaa----aataagtatgttaggtgatgggtttgttaattagcctgatttaatcattacacattataaacatatattaaaacattatattgcaccccataaacatatacaattgttgc---ttaattaaaaataaaCCTTAAAAAAGAGTGAGG-AAAGATtgttcttcttttttcatatcttagtgactaagcacctttgatctcctagtttgttatgtaggacatctggtgtttacccttggacgctttgtctctctcattcttaacgc----cttatcaccaaaactggtaaatttggatgc-aaatatatatgctaattatcctatcactttaaaaaatccctaccaccacaaccctaattcaaatcactatgatttcttttctggattctc-caatagtcttgcatccagtcc-------------ttgcatccagtcttatgcctttacattgttacaacatttgatgaaatcatgtcatccatctccttaaaacttgtcagccactttacactacatttaagaaatact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5329706 814 +   6154872 tgtgat-aacctggaggatgaacctgg-ggacatcatgctaactgaagtaagct-------gaaagac---------aagtattgcatgatttcatttatatatggaatccaaaaaagttgaactcatagaggtagagagt--g---------------ggggcaggagatgga----tgggaaaaggggagatgttgatc-aagggtactaagtttcagttagaaaaaaggaaccagttttagtgatctcacagaatggtgactacaataaacaataatgcattgtttatttcagaa----------------ttact--aagagtagattttaagtgttttcaccacaaaa----aataagtatgttaggtgatgggtttgttaattagcctgatttaatcattacacattataaacatatattaaaacattatattacaccccataaacatatacaattgttgc---ttaattaaaaataaaCCTTAAAAAAGAGTGAGG-AAAGATtgttcttcttttttcatatcttagtgactaagcacctttgatctcctagtttgttatgtaggacatctggtgtttacccttggacgctttgtctctctcattcttaatgc----cgtatcaccaaaactggtaaatttggatgc-aaatatatatgctaattatcctatcactttaaaaaatccctaccaccacaaccctaattcaaatcactatgatttcttttctggattctggcaatagtcttgcatccagtccttgcatccagtctttgcatccagtcttatgcctttgcattgttacaacatttgatgaaatcatgtcatccatctccttaaaacttgtcagccactttacactacatttaagaaatact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74342567 791 + 122973662 tgtgat-aacctggaggatgaacctgg-ggacattatgctaactg-agtaagct-------gaaagac---------aaatactgcataatttcatttatatatggaatccaaaaaagttgaactcatcgaagaagagagt------------------ggggcaggagatggg----tgggaaaaggggagatgttgatc-aagggtactaagtttcagttagaaaaaaggaaccagttttagtgatctcacggaatggtgactacaataaaca--tatgcattgtttatttcaaaa----------------ttact--aagagtagattttaagtgttttcaccacaaaa----aataagtatgttaggtgatgggtttgttaattagcctgatttaatcattacacattataaacatatattaaaacactatattgcaccccataaacatatacaattactgcttgttaattaaaaataaaCCTT---AAAGAGTGAGG-AAAGATTGTTCTT---TATGCATatcttagtgactaagcacctttgatctcctagtttgttatgtaggacatctggtgtttacccttggacgctttg----tctcattcttaacaccttacttatcaccaaaactggtaaatttggatgc-aaatatatgtgctaattaacctgtcacttaaaaaaatccctaccaccacaaccctaatccaaatcactatgatttcttttct---ttctggcaatagtcttgcatccagtcc-------------ttgcatccagccttatgcctttacattgttacaacatttgatgaaatcatgtcatccatctccttaaatcttgtcagccactttccactacaattaagaaatact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29498622 804 + 172585720 TGTGAT-AAACTGGAggatgaacctgg-ggacattatgctaactgaagtaagct-------gaaagac---------aaatactgcattatttcatttatatatggaatccaaaaaagttgaactcatagaagtagagagt--a---------------ggggcaggagatgga----taggaaaaggggagatgttgatc-aagggcattaagtttcagttagaaaaaaggaaccagctttagtgatctcacagaatggtgactacaataaacaatagtgca----tgatctcaaaa----------------ttact--aagagcagattttaagtgttttcaccacaaaa----aataagtatgttaggtgatgggtttgttaattagcctgatttaatcattatacattataaacatgtattaaaacattatatggtaccccataaacatatatgattattgtttgttcattaaaaataTAACTTACAAAAGAATGAGG-AAAGATtgttcctcttttttcatatcttagtgactaaacacctttgatcttctactttgttttgtaggacatctggtatttacccttggacgctttgtctttctcatccttaacaccttacttgtcaccaaaactggtaaatttggatgc-aaaaatatatgctaattatccttttactttaaaaaatccctaccaccactaccctaatccaaaccactatgatttcttttctagattctggcaatagtcttgcatccagtcc-------------ttgaatccagtcttatgcctttacattgttataacatttgataaaatcatgtcatccatctccttaaaacttgtcagccgctttccactacatttaagaaatact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29159737 804 - 170955103 TGTGAT-AAACTGGAggatgaacctgg-ggacattatgctaactgaagtaagct-------gaaagac---------aaatactgcattatttcatttatatatggaatccaaaaaagttgaactcatagaagtagagagt--a---------------ggggcaggagatgga----taggaaaaggggagatgttgatc-aagggcattaagtttcagttagaaaaaaggaaccagctttagtgatctcacagaatggtgactacaataaacaatagtgca----tgatctcaaaa----------------ttact--aagagcagattttaagtgttttcaccacaaaa----aataagtatgttaggtgatgggtttgttaattagcctgatttaatcattatacattataaacatgtattaaaacattatatggtaccccataaacatatatgattattgtttgttcattaaaaataTAACTTACAAAAGAATGAGG-AAAGATtgttcctcttttttcatatcttagtgactaaacacctttgatcttctactttgttttgtaggacatctggtatttacccttggacgctttgtctttctcatccttaacaccttacttgtcaccaaaactggtaaatttggatgc-aaaaatatatgctaattatccttttactttaaaaaatccctaccaccactaccctaatccaaaccactatgatttcttttctagattctggcaatagtcttgcatccagtcc-------------ttgaatccagtcttatgcctttacaTTGTTATAACATTTGATAAAATCATGTCATCCATCTCCTTAAAACTTGTCAGCCGCTTTCCActacatttaagaaatact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2152061 804 -   2996164 TGTGAT-AAACTGGAggatgaacctgg-ggtcattatgctaactgaagtaagct-------gaaagac---------aaatactgcattatttcatttatatatggaatccaaaaaagttgaactcatagaagtagagagt--a---------------ggggcaggagatgga----taggaaaaggggagatgttgatc-aagggcattaagtttcagttagaaaaaaggaaccagctttagtgatctcacagaatggtgactacaataaacaatagtgca----tgatctcaaaa----------------ttact--aagagcagattttaagtgttttcaccacaaaa----aataagtatgttaggtgatgggtttgttaattagcctgatttaatcattatacattataaacatgtattaaaacattatatggtaccccataaacatatatgattattgtttgttcattaaaaataTAACTTACAAAAGAATGAGG-AAAGATtgttcctcttttttcatatcttagtgactaagcacctttgatctcctactttgttttgtaggacatctggtatttacccttggacgctttgtctttctcatccttaacaccttacttgtcaccaaaactggtaaatttggatgc-aaaaatatatgctaattatccttttactttaaaaaatccctaccaccactaccctaatccaaaccgctatgatttcttttctagattctggcaatagtcttgcatccagtcc-------------ttgaatccagtcttatgcctttacattgttataacatttgataaaatcatgtcatccatctccttaaaacttgtcagccgctttccactacatttaagaaatact
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2032830 804 -   2157725 TGTGAT-AAACTGGAggatgaacctgg-ggacgttatgttaactgaagtaagct-------gaaagac---------aaatactgcattatttcatttatatatggaatccaaaaaagttgaactcatagaagtagagagt--a---------------ggagcaggagatgga----taggaaaaggggagatgttgatc-aagggcactaagtttcagttagaaaaaaggaaccagctttagtgatctcacagaatggtgactacaataaacaatagtgca----tgatctcaaaa----------------ttact--aagagcagattttaagtgttttcaccacaaaa----aataagtatgttaggtgatgggtttgttaattagcctgatttaatcattatacattataaacatgtattaaaacattatatggtaccccataaacatatatgattattgtttgttcattaaaaataTAACTTACAAAAGAATGAGG-AAAGATtgttcctcttttttcatatcttagtgactaaacaccttggatcttctactttgttttgtaggacatctggtatttacccttggacgctttgtctttctcatccttaacaccttacttatcaccaaaactggtaaatttggatgc-aaaaatatatgctaattatcctttcactttaaaaaatccctaccaccactaccctaatccaaaccactatgatttcttttctagattctggcaatagtcttgcatccagtcc-------------ttgaatccagtcttatgcctttacattgttataacatttgataaaatcatgtcatccatctccttaaaacttgtcagccgctttccactacatttaagaaatact
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28463207 805 -  71996105 TGTGAT-AAACTGGAggatgaacctgg-ggacattatgctaactgaagtaagct-------gaaagac---------aaatactgcattatttcgtttatatatggaatccaaaaaagttgaactcatagaagtagagagt--a---------------ggggcaggagatgga----taggaaaaggggagatgttgatc-aagggcattacgtttcagttagaaaaaaggaaccagctttagtgatctcacagaatggtgactacaataaacaatagtgca----tgatctcaaaa----------------ttact--aagagcagattttaagtgttttcaccacaaaa----aataaatatgttaggtgatgggtttgttaattagcctgatttaatcattatacattataaacatatattaaaacattatatggtaccccataaacatatatgattattgtttgttcattaaaaataTAACTTACAAAAGAATGAGG-AAAGATtgttcctcttttttcatatcttagtgactaaacacctttgatcttctactttgttttgtaggacatctggtatttacccttggacgctttgtctttctcatccttaacaccttacttatcaccaaaactggtaaatttggatgcaaaaaatatatgctaattatcctttcactttaaaaaatccctaccaccactaccctaatccaaaccactatgatttcttttctagtttctggcaatagtcttgcatccagtcc-------------ttgaatccagtcttatgcctttacaTTGTTATAACATTTGATAAAATCATGCCATCCATCTCCTTAAAACTTGTCAGCCGCTTTCCActacatttaagaaatact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2170705 804 +   2316924 tgtgat-aaactggaagatgaacctgg-ggacattatgttaactgaagtaagct-------gaaagac---------aaatactgcattatttcatttatatatggaatccaaaaaagttgaactcatagaagtagagagt--a---------------ggggcaggagatgga----taggaaaaggggagatgttgatc-aagggcactaagtttcagttagaaaaaaggaaccagctttagtgatctcacagaatggtgactacaataaacaatagtgca----tgatctcaaaa----------------ttact--aagagcagattttaagtgttttcaccacaaaa----aataagtatgttaggtgatgggtttgttaattagcctgatttaatcattatacattataaacatgtattaaaacattatatggtaccccataaacatatatgattattgtttgttcattaaaaataTAACTTACAAAAGAATGAGG-AAAGATtgttcctcttttttcatatcttagtgactaaacaccttggatcttctactttgttttgtaggacatctggtatttacccttggacgctttgtctttctcatccttaacaccttacttatcaccaaaactggtaaatttggatgc-aaaaatatatgctaattatcctttcactttaaaaaatccctaccaccactaccctaatccaaaccactatgatttcttttctagattctggcaatagtcttgcatccagtcc-------------ttgaatccagtcttatgcctttacattgttataacatttgataaaatcatgtcatccatctccttaaaacttgtcagccgctttccactacatttaaggaatact
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2035071 804 -   3067355 tgtgat-aaactggaggctgaacctgg-ggacatgatgctaactgaagtaagct-------gaaagac---------aaatactgcattatttcatttatatatggaatccaaaaaagctgaactcatagaagtagagagt--a---------------ggggcaagagatgaa----tgggaaaaggggagatgttgatc-aagggtactaagtttcagttagaaaaaaggaaccagctttagtgatctcacagaatggtgactacaataaacaatagtgca----tgatctcaaaa----------------ttact--aagagtagattttaagtgttttcaccacaaaa----aataagtatgttaggtgatgggtttgttaattagcctgatttaatcattacacattataaacatatattaaaacattatatggtaccccataaacatatatgattattgtttgttcattaaaaataTAACTTACAAAAGAATGAGG-AAAGATtgttcctcttttttcatatcttagtgactaagcacctgtgatctcctactttgttttgtaggacatctggtatttacccttggacgctttgtctttctcatccttaacaccttacttatcaccaaaactggtaaatttggatgc-aaaaatatatgctaattatcctttcactttaaaaaatccctaccaccactaccctaatccaaaccactatgatttcttttctggattctggcaatagtcttgcatccagtcc-------------ttgcatccagtcttatgcctttacattgttacaacatttgataaaatcatgtcatccatctccttaaaacttgtcagccgctttccactacatttaagaaatact
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171554044 721 - 171630274 TGTGATCAACCTGGAGGATGAACTCGG-GGTc---------------------------------------------------tgcataatttcacttatatgtggaaaccaaaaagcttgaatgcatagaggtagagagtaga---------------ggggcag-----gga----tgggaa------------------aagggcactaagtttaagttagaagaaaggagccagctttagtgacctcacagaatagtgactacagtaaagaataatgcattgtgtatttcaaaattaagagattttaattttaat--aagagtagattttaagtgttttcaccac-aaa----aataagtatgttaggtgaagggtttgttaatcagcctgatttaatcattatacatttt--------------------------accccataaacacatacaattattgtttgtcagtaaaaaataaaaCTTAAAAAAGGATGAGG-AAAGATTGTTCCTCTTTTTTAATACGCTAGTGACTAAGCG--TATGATCTCCTAGTTTGTTATGTA------------TTTACc--------ctttgtctctctcatccttaacaccttacttaccaccaaagctggtagatttgggtgc-aaaaatgtatgctcactatcctatcgctttaaaaaatctctaccaccactaccctaaaccaaaccactgtgatttcttttctggattctggcagtagtcttacatccagtcc-------------ttgcatccggacttatgcctttacattgttagaacatatgataaaatcatgtcatccatatccttaaaacttgtcagccactttccactacgtttaagaaatagt
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1661291 778 -   2232465 tatgat-aatgtggg---tgaacctggagaacattatgctaagtgaaataagccaggcatagaaagacaaatattgtaaatattgtatgatctcacttatatgtggattctaaaaaagttgaactcacagaagtagagact--agaacagcagttacttggggctggggagggagctggaaggaaaagagaggtattgatcaaagggcacagggt----attagaaaaacgaaatcag------------catagaatggtgactgtaataaataataatgcattgtatatttcaaa-----------------tttctaaaagagtagattttaaatatgttcaccacaaaaatataataagtatgtgaggtgatagatttgttgattagtctgatttaattattgcacattattagtatatatcaaaacatcaccttgta-ctcacagatttacacaattatttt---tcaattaaaaCAAAATTTAGAACAAGAATGAGGAAAAAATTGTTTCCCTTTTTCCATATCTTAATGCCT-AGCACCTTTCATCTCCTAGTTCATTATGTAAGAGATCTGGCATTTATCCTTGGACCCTTTATCTCTTTCATCCTTA---------------------------------TATTC-ATA-ATATAAGTTAACTAATTTTTCATTTTTCAAAATTTCTATCACCATAACCCTAATCTAAACTAATATGATTTC-TTTCTAGATGCTGGCAATAGTCTTGCATCCAGTCT--------------------------TATGCCTTTACATTGTTACAGCATTCAATAAAATCATGTCATCCATGTACCTAAA-CTTATCAGCTGCTTTCAATTATATTTAAGAAAAATT
i otoGar3.GL873742         C 0 I 1622
e dasNov3.JH570037            244322 1448 -    859332 I
e canFam3.chr35             26119790 2942 +  26524999 I

a score=7813.000000
s hg38.chr6_GL000254v2_alt    312253 2 +   4827813 at-
s panTro5.chr6              29287300 2 + 175400573 at-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29533484 2 + 173848474 at-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5330520 2 +   6154872 at-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74343358 2 + 122973662 ac-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29499426 2 + 172585720 at-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29160541 2 - 170955103 at-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2152865 2 -   2996164 at-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2033634 2 -   2157725 at-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28464012 2 -  71996105 at-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2171509 2 +   2316924 at-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2035875 2 -   3067355 at-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171554765 2 - 171630274 at-
i calJac3.chr4             C 0 I 1410
s otoGar3.GL873742           1663691 2 -   2232465 -Tt
i otoGar3.GL873742         I 1622 C 0
e dasNov3.JH570037            244322 1448 -    859332 I
e canFam3.chr35             26119790 2942 +  26524999 I

a score=1777852.000000
s hg38.chr6_GL000254v2_alt    312255 281 +   4827813 attgtatacttaaaattttgctaggagggtagatcttatgttaagtgttctcatcacacgcacac--acatacacaa-cacaataaagaaggtgggaggaaactgttggag------gtgatggatgtatatatgggatagattgtgttgatggtttcacaggtatatactcaccttcaaactcatcaagttgtatacattaaatctgtactgc-ttttgtatgtcagtcatacttcaataaagtggtcaaaaaGCTAATATAAAACATTTGGTTaaaaaataacagccat
s panTro5.chr6              29287302 282 + 175400573 attgtagacttaaaattttgctaggagggtagatcttatgttaagtgttctcatcacacgcgcac--acatacacaaacacaataaagaaggtgggaggaaactgttggag------gtgatggatgtatatatgggatagattgtgttgatgctttcacaggtatatactcaccttcaaactcatcaagttgtatacattaaatgtgtactgc-ttttgtatgtcagtcatacttcaataaagtggtcaaaaaGCTAATATAAAACATTTGGTTaaaaaataacagccat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29533486 282 + 173848474 attgtatacttaaaattttgctaggagggtagatcttatgttaagtgttctcatcacacgcgcac--acatacacaaacacaataaagaaggtgggaggaaactgttggag------gtgatggatgtatatatgggatagattgtgttgatgctttcacaggtatatactcaccttcaaactcatcaagttgtatacattaaatgtgtactgc-ttttgtatgtcagtcatacttcaataaagtggtcaaaaaGCTAATATAAAACATTTGGTTaaaaaataacagccat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5330522 282 +   6154872 attgtatacttaaaattttgctaggagggtagatcttatgttaagtgttctcatcacacgcacac--acatacacaaacacaataaagaaggtgggaggaaactgttggag------gtgatggatgtatatatgggatagattgtgttgatggtttcacaggtatatactcaccttcaaactcatcaagttgtatacattaaatgtgtactgc-ttttgtatgtcagtcatacttcaataaagtggtcaaaaaGCTAAAATAAAACATTTGGTTAAAAAATAACAGCCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74343360 279 + 122973662 attgtatacttaaagttttgctaggagggtagatcttatgttaagtgttctcatcacatgcacac--acatacacaaacacaata---aaggtgggaggaaactgttggag------gtgatggatgtatatatgggatagattgtgttgatggtttcacaggtatatactcaccttcaaacccatcaagttgtatacattaaatgtgtactgc-ttttgtatgtcagtcatacttcaataaagtggtcaaaaaGCTAAAATAAAGCATTTGATTaaaaaataacagccat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29499428 281 + 172585720 attgtatacttaaaattttgcaaggagggtagatcttatgttaagtgttctcatcacacacacac--acatacacaaacacaataaagaaggtgggagg-aactgttggag------gtgatggatgtatatatggcatagattatggtgctggtttcacaggtatatactcaccttcaaactcattaagttgtttacgttaaatgtatactgc-ttttgtatgtcagtcatacttcaataaagtggtcaaaaaGCTAAAATAAAACATTTGGTTaaaaaataacagccat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29160543 281 - 170955103 attgtatacttaaaattttgcaaggagggtagatcttatgttaagtgttctcatcacacacacac--acatacacaaacacaataaagaaggtgggagg-aactgttggag------gtgatggatgtatatatggcatagattatggtgatggtttcacaggtatatactcaccttcaaactcattaagttgtttacgttaaatgtatactgc-ttttgtatgtcagtcatacttcaataaagtggtcaaaaaGCTAAAATAAAACATTTGGTTaaaaaataacagccat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2152867 281 -   2996164 attgtatacttaaaattttgcgaggagggtagatcttatgttaagtgttctcatcacacgcacac--acatacacagacacaataaagaaggtgggagg-aactgttggag------gtgatggatgtatatatggcatagattgtggtgatggtttcacaggtatatactcaccttcaaactcattaagttgtttacgtttaatgtatactgc-ttttgtatgtcagtcatacttcaataaagtggtcaaaaaGCTAAAATAAAACATTTGGTTaaaaaataacagccat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2033636 281 -   2157725 attgtatacttaaaattttgcgaggagggtagatcttatgttaagtgttcttatcacacacacac--acatacacaaacacaataaagaaggtgggagg-aactgttggag------gtgatggatgtatatatggcatagattatggtgatggtttcacaggtatatactcaccttcaaactcattaagttgtttacgttaaatgtatactgc-ttttgtatgtcagtcatacttcaataaagtggtcaaaaaGCTAAAATAAAACATTTGGTTaaaaaataacagccat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28464014 283 -  71996105 attgtataattaaaattttgcgaggagtgtagatcttatgttaaatgttctcatcacacacacacatacatacacaaacacaataaagaaggtgggagg-aactgttggag------gtgatggatgtatatatggcatagattatggtgatggtttcacaggtatatactcaccttcaaactcattaagttgtttacgttaaatgtatattgc-ttttgtgtgtcagtcatacttcaataaagtggtcaaaaaGCTAAAATAAAACATTTGGTTaaaaaataacagccat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2171511 281 +   2316924 attgtatacttaaaattttgcgaggagggtagatcttatgttaagtgttcttatcacacacacac--acatacacaaacacaataaagaaggtgggagg-aactgttggag------atgatggatgtatatatggcatagattatggtgatggtttcacaggtatatactcaccttcaaactcattaagttgtttacgttaaatgtatactgc-ttttgtatgtcagtcatacttcaataaagtggtcaaaaaGCTAAAATAAAACATTTGGTTaaaaaataacagccat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2035877 282 -   3067355 attgtatacttaaaattttgcgaggagggtagatcttatgttaagtgttctcatcacatgcacac--acacacacaaacacaataaagaaggtgggaggaaactgttggag------gtgatggatgtatatatggcatagattgtggtgatggtttcacaggtatatactcaccttcaaactcattaagttgtatacattaaatgtgtaccgc-ttttgtatgtcagtcatacttcaataaagtggtcaaaaaGCTAAAATAAAACATTTGGTTAAAAAATAACAGCCGt
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1663693 283 -   2232465 attgtacagttaaactactgctgagagggtggatcttatgtaaagtg--cttatcacacacatgc--atatacaata----agtaaagaaggcaggaggaaacttttggaaacttttatgatgaatatgtgtatgttatagattatggtgataatttcacgggtatacatttatctttaaactcaggaagttatgtgccttaaaaatgtacagctttttgtatgtcaaacatactttaatagaatggtcaaaaaaTTAAGAGAAAATATTTGATTGAAAAATAACAGCTAA
i otoGar3.GL873742         C 0 I 111
e dasNov3.JH570037            244322 1448 -    859332 I
e canFam3.chr35             26119790 2942 +  26524999 I
e calJac3.chr4             171554767 1410 - 171630274 I

a score=1054796.000000
s hg38.chr6_GL000254v2_alt    312536 164 +   4827813 tagccaggtgtggtggcgtactcctatagtcccagctactcaggaggctgaggcgggaggatcacttgagcccaggagtttgaggttgcggtgagctatgattgcaccactgcactccaccctgggtgctggagcaagatcctgtctcaaaaacaaacaaaa---------------------CC
s panTro5.chr6              29287584 164 + 175400573 tagccaggtgtggtggcgtactcctatagtcccagctactcaggaggctgaggcgggaggatcacttgagcccaggagtttgaggttgcggtgagctatgattccaccactgcactccaccctgggtgctggagcaagatcctgtctcaaaaacaaacaaaa---------------------CC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29533768 164 + 173848474 tagccaggtgtggtggcgtactcctatagtcccagctactcaggaggctgaggcgggaggatcacttgagcccaggagtttgaggttgcggtgagctatgattgcaccactgcactccaccctgggtgctggagcaagatcctgtctcaaaaacaaacaaaa---------------------CC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5330804 164 +   6154872 TAgccaggtgtggtggcgtactcctatagtcccagctactcgggaggctgaggcgggaggatcacttgagcccaggagttcgaggttgcggtgagctatgattgcaccactgcactccaccctgggtgctggagcaagatcctgtctcaaaaacaaacaaaa---------------------CC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74343639 164 + 122973662 tagccaggtgtggtggcatgcttctatagtcccagccactcgggaggctgaggcaggaggatcacttgagcccaggagttcaaggttgcagtgagctatgattgcaccactgcactgcaccttgggtgctggagcaagatcctgtctcaaaaacaaacaaaa---------------------CC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29499709 164 + 172585720 tagccaggtgtggtggcatgctcctatagtcccagctactcaggagactgaggcaggaggatcacttgagcccaggaggtggaggctgcagtgagctatgattgcaccactgcactccaccctgggtgctggagcaagatcctgtctcaaaaacaaacaaaa---------------------CC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29160824 164 - 170955103 tagccaggtgtggtggcatgctcctatagtcccagctactcaggagactgaggcaggaggatcacttgagcccaggaggtggaggctgcagtgagctatgattgcaccactgcactccaccctgggtgctggagcaagatcctgtctcaaaaacaaacaaaa---------------------CC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2153148 164 -   2996164 tagccaggtgtggtggcatgcttctatagtcccagctactcaggagactgaggcaggaggatcacttgagcccaggaggtggaggttgcagtgagctgtgattgcaccactgcactccaccctgggtgctggagcaagatcctgtctcaaaaacaaacaaaa---------------------TC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2033917 164 -   2157725 tagccaggtgtggtggcatgctcctatagtcccagctactcaggagactgaggcaggaggatcacttgagcccaggaggtggaggttgcagtgagctatgattgcaccactgcactccaccctgggtgctggagcaagatcctgtctcaaaaacaaacaaaa---------------------CC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28464297 164 -  71996105 tagccaggtgtggtggcatgctcctatagtcccagctactcaggagactgaggcaggaggatcacttgagcccaggaggtggaggttgcagtgagctatgattccaccactgcactccaccctgggtgctggagcaagatcctgtctcaaaaacaaacaaaa---------------------CC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2171792 164 +   2316924 tagccaggtgtggtggcatgctcctatagtcccagctactcaggagactgaggcaggaggatcacttgagcccaggaggtggaggttgcagtgagctatgattgcaccactgcactccaccctgggtgctggagcaagatcctgtctcaaaaacaaacaaaa---------------------CC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2036159 164 -   3067355 tagccaggtgtggtggcatgcttctatagtcccagctactcaggaggctgaggcaggaggatcacttgagcccaggaggtcgaggttgcagtgagctatgattgcaccactgcactccaccctgggtgctggagcaagatcctatctcaaaaacaaacaaaa---------------------CC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1664087 176 -   2232465 tagcctggcattgtggtgggcgcctgtagtcccagctacttgggaggctgaggcaagagaattgcttaagcccaagagtttgaggttgctgtgagctgtgat---gccacagcactctactgagggcgacatag------actgtttcaaaaaaaaaaaaaaaagaaaaagaaaaagaaaaaTAA
i otoGar3.GL873742         I 111 C 0
e dasNov3.JH570037            244322 1448 -    859332 I
e canFam3.chr35             26119790 2942 +  26524999 I
e calJac3.chr4             171554767 1410 - 171630274 I

a score=221870.000000
s hg38.chr6_GL000254v2_alt    312700 36 +   4827813 CAGATAAATATCAAACTGGTGCTTCTT-----------CTCTCTCTT
s panTro5.chr6              29287748 36 + 175400573 CAGATAAATATCAAACTGGTGCTGCTT-----------CTCTCTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29533932 36 + 173848474 CAGATAAATATCAAACTGGTGCTGCTT-----------CTCTCTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5330968 36 +   6154872 CAGATAAATATCAAACTGGTGCTTCTT-----------CTCTCTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74343803 36 + 122973662 CAGATAAATATCAAACTGGTGCTTCTT-----------CTCTCTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29499873 35 + 172585720 CAGGTAAATATCAAACTGGTGCTTCTT------------TCTCTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29160988 35 - 170955103 CAGGTAAATATCAAACTGGTGCTTCTT------------TCTCTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2153312 35 -   2996164 CAGGTAAATATCAAACTGGTGCTTCTT------------TCTCTCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2034081 35 -   2157725 CAGGTAAATATCAAACTGGTGCTTCTT------------TCTCTCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28464461 35 -  71996105 CAGATAAATATCAAACTGGTGCTTCTT------------TCTCTGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2171956 35 +   2316924 CAGGTAAATATCAAACTGGTGCTTCTT------------TCTCTCTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2036323 35 -   3067355 CAGATAAATATCAAACTGGTGCTTCTC------------TCTCTCTT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1664263 43 -   2232465 CAGCTAAATGTCAAACCAATGCCCCTCTCTC----CCTCTCTCTCTG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26122732 47 +  26524999 CAGTTAAATATCGAACTGGTGAATCTCTCTCTAGTTCTCTCTTTCTC
i canFam3.chr35            I 2942 C 0
e dasNov3.JH570037            244322 1448 -    859332 I
e calJac3.chr4             171554767 1410 - 171630274 I

a score=2349918.000000
s hg38.chr6_GL000254v2_alt    312736 319 +   4827813 TATATAGAT------GTAGTACAAAAAGTTGTGCTTTTTTTGTTTGTTATGCCATTTCAAATATGTTTTTTTGAATGTTATTAAGAAATTACTTCCAACTGTGGCCATGATTCAAAAGTGGATACATTTGTGAGACTAACCGGAGATGGTGGTTGAAATAGCCG-TTTTGAGAAAATCATTTTGTGATTTCTTTAGCATTAGCTTTTCAAAAATTATGATTTGATTCTGAGTTTTGCCATTAATCAAATTGGATAGAAAG--AAAAATAA-TTCTCTGA--AAGATATTTCAAGCTGTCACACCCCATTAAAGTTCCATAATGTCTGAGCA
s panTro5.chr6              29287784 319 + 175400573 TATATAGAT------GTAGTACAAAAAGTTGTGCTTTTTTTGTTTGTTATGCCATTTCAAATATGTTTTTTTGAATGTTATTAAGAAATTATTTCCAACTGTGGCCATGATTCAAAAGTGGATACATTTGTGAGACTAACCGGAGATAGTGGTTGAAATAGCCG-TTTTGAGAAAATCATTTTGTGATTTCTTTAGCATTAGCTTTTCAAAAATTATGATTTGATTCTGAGTTTTGCCATTAATCAAATTGGATAGAAAG--AAAAATAA-TTCTCTGA--AAGATATTTCAAGCTGTCACACCCCATTAAAGTTCCATAATGTCTGAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29533968 319 + 173848474 TATATAGAT------GTAGTACAAAAAGTTGTGCTTTTTTTGTTTGTTATGCCATTTCAAATATGTTTTTTTGAATGTTATTAAGAAATTATTTCCAACTGTGGCCATGATTCAAAAGTGGATACATTTGTGAGACTAACCGGAGATAGTGGTTGAAATAGCCG-TTTTGAGAAAATCATTTTGTGATTTCTTTAGCATTAGCTTTTCAAAAATTATGATTTGATTCTGAGTTTTGCCATTAATCAAATTGGATAGAAAG--AAAAATAA-TTCTCTGA--AAGATATTTCAAGCTGTCACACCCCATTAAAGTTCCATAATGTCTGAGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5331004 318 +   6154872 TATATAGAT------GTAGTACAAAAAGTTGTGCTTTTTTTGTTTGTTATGCCATTTCAAATAT-TTTTTTTGAATGTTATTAAGAAATTACTTCCAGCTGTGGCCATGATTCAAAAGTGGATACATTTGTGAGACTAACCAGAGATAGTGGTTGAAATAGCCG-TTTTGAGAAAATCATTTTGTGATTTCTTTAGCATTAGCTTTTCAAAAATTATGATTTGATTCTGAGTTTTGCCATTAATCAAATTGGATAGAAAG--AAAAATAA-TTCTCTGA--AAGATATTTCAAGGTGTCACACCCCATTAAAGTTCCATAATGTCTGAGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74343839 320 + 122973662 TATATAGAT------GTAGTATAAAAAGTTGTGCTTTTTTTGTTTGTTATGCCATTTCAAATACGTTTTTTTGAATATTATTAAGAAATTACTTCCAACTGTGGCAATGATTCAAAAGCAGATACATTTATGAGACTAACTGGAGATAGTGGTTGAAATAGCCATTTTTGAGAAAATCATTTTGTGATTTTCTTAGCATTAGCTTTTCAAAAATTATGATTTGATTCTGAATTTTGCCATTGATCAAATTGGATAGAAAG--AAAAATAA-TTCTCTGA--AAGATATTTCAAGCTGTCACACCCCATTAAAGTTCCATAATGTCTGAGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29499908 316 + 172585720 TATATAGAT------GTAGTACAAAAAGTTGTGCTTTTTTTGTTTGTTATGCCATTTCAAAA---TTTTTTTGAATATTATTAAGAAATTACTTCCAACTGTGGCCATGATTCAAAAGTGGATACATTTATGAGACTAACTGGAGATAGTGGTTGAAATAGCCG-TTTTGAGAAAATCATTTTGTGATTTCCTTAGCATTAGCTTTTCAAAAATTATGATTTGATTCTCAGTTCTGCCATTGATCAAATTGGATAGAAAG--AAAAATAA-TTCTCTGA--AAGATATTTCAAGCTGTCACACTCCATTAAAGTTCCATAATGTCTGAGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29161023 316 - 170955103 TATATAGAT------GTAGTACAAAAAGTTGTGCTTTTTTTGTTTGTTATGCCATTTCAAAA---TTTTTTTGAATATTATTAAGAAATTACTTCCAACTGTGGCCATGATTCAAAAGTGGATACATTTATGAGACTAACTGGAGATAGTGGTTGAAATAGCCG-TTTTGAGAAAATCATTTTGTGATTTCCTTAGCATTAGCTTTTCAAAAATTATGATTTGATTCTCAGTTCTGCCATTGATCAAATTGGATAGAAAG--AAAAATAA-TTCTCTGA--AAGATATTTCAAGCTGTCACACTCCATTAAAGTTCCATAATGTCTGAGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2153347 316 -   2996164 TATATAGAT------GTAGTACAAAAAGTTGTGCTTTTTTTGTTTGTTATGCCATTTCAAAA---TTTTTTTGAATATTATTAAGAAATTGCTTCCAACTGTGGCTATGATTCAAAAGTGGATACATTTATGAGACTAACTGGAGATAGTGGTTGAAATAGCCG-TTTTGAGAAAATCATTTTGTGATTTCCTTAGCATTAGCTTTTCAAAAATTATGATTTGATTCTCAGTTCTGCCATTGATCAAATTGGATAGAAAG--AAAAATAG-TTCTCTGA--AAGATATTTCAAGCTGTCACACTCCATTAAAGTTCCATAATGTCTGAGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2034116 316 -   2157725 TATCTAGAT------GTCGTACAAAAAGTTGTGCTTTTTTTGTTTGTTATGCCATTTCAAAT---TTTTTTTGAATATTATTAAGAAATTACTTCCAACTGTGGCCATGATTCAAAAGTGGATACATTTATGAGACTAACTGGAGATAGTGGTTGAAATAGCCG-TTTTGAGAAAATCATTTTGTGATTTCCATAGCATTAGCTTTTCAAAAATTATGATTTGATTCTGAGTTCTGCCATTGATCAAATTGGATAGAAAG--AAAAATAA-TTCTCTGA--AAGATATTTCAAGCTGTCACACTCCATTAAAGTTCCATAATGTCTGAGCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28464496 316 -  71996105 TATATAGAT------GTAGTACAAAAAGTTGTGCTTTTTTTGTTTGTTATGCCATTTCAAAA---ATTTTTTGAATATTATTAAGAAATTACTTCCAACTGTGGCCATGATTCAAAAGTGGATAAATTTATGAGACTAACTGGAGATAGTGGTTGAAATAGCCG-TTTTGAGAAAATCATTTTGTGAGTTCCTTAGCATTAGCTTTTCAAAAATTATGATTTGATTCTGAGTTCTGCCATTGATCAAATTAGATAGAAAG--AAAAATAA-TTCTCTGA--AAGATATTTCAAGCTGTCACACTCCATTAAAGTTCCATAATGTCTGAGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2171991 316 +   2316924 TATCTAGAT------GTAGTACAAAAAGTTGTGCTTTTTTTGTTTGTTATGCCATTTCAAAT---TTTTTTTGAATATTATTAAGAAATTACTTCCAACTGTGGCCATGATTCAAAAGCGGATACATTTATGAGACTAACTGGAGATAGTGGTTGAAATAGCCG-TTTTGAGAAAATCATTTTGTGATTTCCTTAGCATTAGCTTTTCAAAAATTATGATTTGATTCTGAGTTCTGCCATTGATCAAATTGGATAGAAAG--AAAAATAA-TTCTCTGA--AAGATATTTCAAGCTGTCACACTCCATTAAAGTTCCATAATGTCTGAGCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2036358 316 -   3067355 TATATAGAT------GTTGTACAAAAAGTTGTGCTTTTTTTGTTTGTTATGCCATTTCAAAA---TTTTTTTGAATATTATTAAGAAATTACTTCCAACTGTGGCCATGATTCAAAAGTGGATACGTTTATGAGACTAACTGGAGATAGTGGTTGAAATAGCCG-TTTTGAGAAAATCATTTTGTGATTTCCTTAGCATTAGCTTTTCAAAAATTATGATTTAATTCTGAGTTCTGCCATTGATCAAATTGGATAGAAAG--AAAAATAA-TTCTCTGA--AAGATATTTCAAGCTGTCACACCCCATTAAAGTTCCATAATGTCTGAGCA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1664306 316 -   2232465 TATGTAGGTATAATAATAGTAGAAAAAGTTATG------TTCTTTGTTATGCTATTTCAAATAT-GTTTCTTGAACATTATAAAGAAATTACTTCAAACTGTGGCCATGATTCAAAAGTGAACACATTTACCAAACTAACTGGATATAGTGATAAAGATAACTG-TTTAAAGAGAATAATTTTAAGCTTTCTTTAGCATTAGTTTTTCAAAAGTTATGATTTGAGCCTGAGTTCTGCCACTGACCAGGTTAGACATAAGG--AGAAATAA---ATCTGC--AATGTATCACAAGGTGTAACACAGTGTTAGAGTTCCATAATGTTTGAGGA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26122779 312 +  26524999 TGTGTAGAT------ATAGTACAAAATGTTATGCTTTTT---GATGTTATGCCATTTCAATTAT-GTTTCTTGGACATTAT-GAGAAATTACTTCAAAC--TGGCTGTGATTCAAAAGTAGAC-TGTGTAGAAGACCAACTACATATACTGGTTAAAATAGTTG-TTTTGAGAGAGTCATTTGTTGATTTCCTCAGAGCTAGCTTTTAAAGATTTACAATTTGAGCCTAGATTCTGCCATTGACCAATATGCATA-AAAG--AAAAGTAA-ACACTCGACTATCGAATTACACACTGTCACACACCAGTAGAGGTATGTAATATTTGGGCA
i canFam3.chr35            C 0 I 2
s dasNov3.JH570037            245770 286 -    859332 TGTATAAAT------GTAGTGCAAAAA-TTGTGCTTTTT---TTTGTTATGCCTTTTCAAATAT-GGTTCTTTACCATTACAAAATATTTACTTCAAACTGTGACTATGATTTAAAAGTGGACACATTCACTACACTAATTGAATGTACCAGTCGACTTAGGCA---------------TCTGGTGATTTCTTCAGAATTTACTTTTCAAGAATCATGATTT-----------------TTGACCAAGCTAAGTAGAAAGCAACAAACAACCTCTCTGA--ATTGTATAGCAGCCTGTCATATACCATTAGAGTTCTGATATGTCTGAACA
i dasNov3.JH570037         I 1448 C 0
e calJac3.chr4             171554767 1410 - 171630274 I

a score=2744030.000000
s hg38.chr6_GL000254v2_alt    313055 335 +   4827813 GGGGC---ATC----AATAATTAATGCTTATTTATTTTAACAGACTCGTTGATGTGTATAATTGTGCCTAACTTCTGAATAAAATAGGGCTTCAGTTAAAATTATATAAA------AACCTGAAAATTCTTTTAAAATTAAAATCAATATTATGCTGTTAATTTCTTAACTA-TTTCATTATTACTACAGTCCATAAAGATTAACTCAGGAAAGAATAAAAATCCTCCTTCTGCCTATTAAAAA-GTGACATAGAAAAATCTTCAAATAAATTTTCATGCACAGTATGAGATTTAGAAATGGATACATAAAATC-TGAGTCCTTTATGGCTCCACAACCTTCAAGAATAAA
s panTro5.chr6              29288103 335 + 175400573 GGGGC---ATG----AATAATTAATGCTTATTTATTTTAACAGACTCGTTGATGTGTATAATTGTGCCTAACTTCTGAATAAAATAGGGCTTCAGTTAAAATTATATAAA------AACCTGAAAATTCTTTTAAAATTAAAATCAATATTATGCTGTTAATTTCTTAACTA-TTTCATTATTACTACAGTCCATAAAGATTAACTCAGGAAAGAATAAAAATCCTCCTTCTGCCTATTAAAAA-GTGACATAGAAAAATCTTCAAATAAATTTTCATGCACAGTATGAGATTTAGAAATGGATACATAAAATC-TGAGTCCTTTATGGCTCCACAACCTTCAAGAATAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29534287 335 + 173848474 GGGGC---ATG----AATAATTAATGCTTATTTATTTTAACAGACTCGTTGATGTGTATAATTGTGCCTAACTTCTGAATAAAATAGGGCTTCAGTTAAAATTATATAAA------AACCTGAAAATTCTTTTAAAATTAAAATCAATATTATGCTGTTAATTTCTTAACTA-TTTCATTATTACTACAGTCCATAAAGATTAACTCAGGAAAGAATAAAAATCCTCCTTCTGCCTATTAAAAA-GTGACATAGAAAAATCTTCAAATAAATTTTCATGCACAGTATGAGATTTAGAAATGGATACATAAAATC-TGAGTCCTTTATGGCTCCACAACCTTCAAGAATAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5331322 335 +   6154872 GGGGC---ATG----AATAATTAATGCTTATTTATTTTAACAGACTCGTTGATGTGTATAATTGTGCCTAACTTCTGAATAAAATAGGGCTTCAGTTAAAATTATATAAA------AACCTGAAAATTCTTTTAAAATTAAGATCAATATTATGCTGTTAATTTCTTAACTA-TTTCATTATTACTACAGTCCATAAAGATTAACTCAGGAAAGAATAAAAATCCTCCTTCTGCCTATTAAAAA-GTGACATAGAAAAATCTTCAAATAAATTTTCATGCACAGTATGAGATTTAGAAATGGATACATAAAATC-TGAGTCCTTTATGGCTCCACAACCTTCAAGAATAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74344159 330 + 122973662 GGGGC---ATG----AATAATTAATGCTTATTTATTTTAACAGACTCGTTGATGTGTATAATTCTGCCTAACTTCTGAATAAAATAGGGCTTCAGTTAAAATTATATAAA------AATCTGAAACTTCTTTTAAAATTAAAATCAATATTATGCTGTTAATTTCTTAACTA-TTTGATTATTACTACAGTCCATAAAGATTAACTCAGGAAAGAATAAAAATCTTCCTTCTGCCTATTAAAAA-GTGACATAGAAAAATCTTCAAATACATTTTCATGCACAGTATGAGATTTAGAAATGGAT-----AAACC-TGAGTCCTTTATGGCTCCACAACCTTCAAGAATAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29500224 342 + 172585720 GGGGC---ATG----AATAATTAATACTTATTTATATTAACAGACTCGTTGATGTATATAATTGTGCCTAACTTCTGAATAAAGCAGGGCTTCAGTTAAAATTATATAAAAACCTGAACCTGAAAATTCTTTTAAAATCAAAATCAATATTATGCTGTTAATTTCTTAACTATTTTCATTATTACTATAGTCTGTAAAGATTAACTCAGGAAAGAATAAATATCCTCCTTCTGCCTATTAAAAA-GTGACATAGAAAAATCTTCAAATAAATTTTCATGCACAATATGAGATTTAGAAATGGATAAATAAAATC-TGAGTCCTTTAGGGCTCCACAACCTTCAAGAATAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29161339 342 - 170955103 GGGGC---ATG----AATAATTAATACTTATTTATATTAACAGACTCGTTGATGTATATAATTGTGCCTAACTTCTGAATAAAGCAGGGCTTCAGTTAAAATTATATAAAAACCTGAACCTGAAAATTCTTTTAAAATCAAAATCAATATTATGCTGTTAATTTCTTAACTATTTTCATTATTACTATAGTCTGTAAAGATTAACTCAGGAAAGAATAAATATCCTCCTTCTGCCTATTAAAAA-GTGACATAGAAAAATCTTCAAATAAATTTTCATGCACAATATGAGATTTAGAAATGGATAAATAAAATC-TGAGTCCTTTAGGGCTCCACAACCTTCAAGAATAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2153663 342 -   2996164 GGGGC---ATG----AATAATTAATACTTATTTATATTAACAGACTCGTTGATGTATATAATTGTGCCTAACTTCTGAATAAAGCAGGGCTTCAGTTAAAATTATATAAAAACCTGAACCTGAAAATTCTTTTAAAATCAAAATCAATATTATGCTGTTAATTTCTTAACTATTTTCATTATTACTATAGTCTGTAAAGATTAACTCAGGAAAGAATAAATATCCTCCTTCTGCCTATTAAAAA-GTGACATAGAAAAATCTTCAAATAAATTTTCATGCACAATATGAGATTTAGAAATGGATAAATAAAATC-TGAGTCCTTTAGGGCTCCACAACCTTCAAGAATAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2034432 342 -   2157725 GGGGC---ATG----AATAATTAATACTTATTTATATTAACAGACTCGTTGATGTATATAATTGTGCCTAACTTCTGAATAAAGCAGGGCTTCAGTTAAAATTATATAAAAACCTGAACCTGAAAATTCTTTTAAAATCACAATCAACATTATGCTGTTAATTTCTTAACTATTTTCATTATTACTATAGTCTGTAAAGATTAACTCAGGAAAGAATAAATATCCTCCTTCTGCCTATTAAAAA-GTGACATAGAAAAATCTTCAAATAAATTTTCATGCACAATATGAGATTTAGAAATGGATAAATAAAATC-TGAGTCCTTTAGGGCTCCACAACCTTCAAGAATAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28464812 342 -  71996105 GGGGC---ATG----AATAATTAATACTTATTTATATTAACAGACTCGTTGATGTATATAATTATGCCTAACTTCTGAATAAAGCAGGGCTTCAGTTAAAATTATATAAAAACCTGAACCTGAAAATTCTTTTAAAATCAAAATCAATATTATGCTGTTAATTTCTTAACTATTTTCATTATTACTATAGTCTGTAAAGATTAACTCAGGAAAGAATAAATATCCTCCTTCTGCCTATTAAAAA-GTGACATAGAAAAATCTTCAAATAAATTTTCATGCACAATATGAGATTTAGAAATGGATAAATAAAATC-TGAGTCCTTTAGGGCTCCACAACCTTCAAGAATAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2172307 342 +   2316924 GGGGC---ATG----AATAATTAATACTTATTTATATTAACAGCCTCGTTGATGTATATAATTGTGCCTAACTTCTGAATAAAGCAGGGCTTCAGTTAAAATTATATAAAAACCTGAACCTGAAAATTCTTTTAAAATCACAATCAACATTATGCTGTTAATTTCTTAACTATTTTCATTATTACTATAGTCTGTAAAGATTAACTCAGGAAAGAATAAATATCCTCCTTCTGCCTATTAAAAA-GTGACATAGAAAAATCTTCAAATAAATTTTCATGCACAATATGAGATTTAGAAATGGATAAATAAAATC-TGAGTCCTTTAGGGCTCCACAACCTTCAAGAATAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2036674 342 -   3067355 GGGGC---ATG----AATAATTAATACTTATTTATATTAACAGACTCGTTGATGTGTATAATTGTGCCTAACTTCTGAATAAAGCAGGGCTTCAGttaaaattatataaaaacctgaacctgaaaattcttttaaaattaaaatcaatattaTGCTGTTAATTTCTTCACTATTTTCATTATTACTATAGTCTGTAAAGATTAACTCAGGAAAGAATAAAAGTCCTCCTTCTGCCTATTAAAAA-GTGACATAGAAAAATCTTCAAATAAATTTTCATGCGCAATATGAGATTTAGAAATGGATAAATAAAATC-CGAGTCCTTTAGGGCTCCACAACCTTCAAGAATAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171556177 329 - 171630274 GAGGC---ATG----AATAATTAATACTAATT----TTGACAGACTC---AATGTGTATAACTGTGCCTAACTTCGGAATAAAATAGGACTTCAGTAAAAATGATATAAA------AACCTGAAAATTCTTTTAAAATTAAAATCAGTCTCATACTGTTAATTCCTTAACTATTTTCATTATTACTATAGTCCCCAAAGATTAATTCAGGAAAGTATAAAAATCCTCCTTCTGCCTATTAAAAA-GTGACATAGAAAAATCTTCAAATAAATTTTCATGCACAGTATGAGATTTATAAATGCATAAATAAAATC-TGAGTCCTTCCTGGCTCCACAATCTTTGAGAATACA
i calJac3.chr4             I 1410 C 0
s otoGar3.GL873742           1664622 272 -   2232465 GGGGT---ATG----AATAATTAATATTTATTT------------TGGAAGATACATGTAATGTT-----ACTTCT-AATAAAACAGGGATTTAGCTTAATTTATATGAAAGA---AAAGTGAAAATTCTTTAAAAATTAAAGTCACTTCCACACTATTAATTTCTTAACTATTTTCATTATTATTATAGCCCTAACAGATTAATTCGAGAAGGGCTAAAAA---TCCTTCTGCTAATTAAAAG-CTCACAAAG-AAAATCTACAAATAATTTCTTATACACATTATGAAATTTAAAGATGGATA----------------------------------------------
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26123093 330 +  26524999 GGGGCTGAATA----CATACTTAATATTTATTTA--TTGACAGACAAATTGATGTGTATAATAGTAC----CTTCTCATTAAGTCA-AATTTCAGTTAAAATTATATGAAAACA--AAAATGAAAATTCCTTTAAAATTA--GTCAGTGTCATGTTGTTAATTACTTAACTA-TTCCATCATCATTACAGCCTTCAAAGATTAATTCAGGAAGGAAAAATAATCCTTCTTATGGCTATTAAAAGCCTGACATGG-GAAGTCTACAAATAATTTTTCATGCACATTATGAGATTTAGAGACAGACCAAAAATATC-TGATTCCTTCCCAGCTCC---AGTCTCATGAATAAA
i canFam3.chr35            I 2 C 0
s dasNov3.JH570037            246056 321 -    859332 GGGGT---GTGAGTAAATAATTAATGCTTATTTATTTTGACAGACATGTTGGTGTTTGTATTCATACCTAATTTCTGAATAAAACAGGACTTCAGTTAAAATTACATGGAAACA--AAACTGAAAATTATTTTAA------------TTCCATGCTATTAATTCCTTGATCATTTTCATTATTTCTACAGCCTTCAAAGATTAATCCAGAAAAAGATAAAAATCTTTCTATTG------AAAAA-CTGAAATAG-GAAATCTTCAGATAATTTTTCATGCACACT-----GTTTAGAAACAGATCTAAAACATCTTGAGTCACTTCAAGCTCCACAATCTTAATGAATAAA
i dasNov3.JH570037         C 0 I 123

a score=28298.000000
s hg38.chr6_GL000254v2_alt    313390 4 +   4827813 ATAT
s panTro5.chr6              29288438 4 + 175400573 ATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29534622 4 + 173848474 ATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5331657 4 +   6154872 ATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74344489 4 + 122973662 ATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29500566 4 + 172585720 GTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29161681 4 - 170955103 GTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2154005 4 -   2996164 GTAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2034774 4 -   2157725 ATAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28465154 4 -  71996105 ATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2172649 4 +   2316924 GTAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2037016 4 -   3067355 ATAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171556506 4 - 171630274 ATAT
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26123423 4 +  26524999 ATAT
i canFam3.chr35            C 0 I 1
e dasNov3.JH570037            246377 123 -    859332 I
e otoGar3.GL873742           1664894 0 -   2232465 C

a score=309825.000000
s hg38.chr6_GL000254v2_alt    313394 59 +   4827813 TTTGCTGACAAGTTTCACAAATGGCATTAA-----aaaacaaaacaaaa---caaaattaaaaacaa
s panTro5.chr6              29288442 59 + 175400573 TTTGCTGACAAGTTTCACAAATGGCATTAA-----aaaacaaaacaaaa---caaaattaaaaacaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29534626 59 + 173848474 TTTGCTGACAAGTTTCACAAATGGCATTAA-----aaaacaaaacaaaa---caaaattaaaaacaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5331661 59 +   6154872 TTTGCTGACAAGTTTCACAAATGGCATTAA-----aaaacaaaacaaaa---caaaattaaaaacaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74344493 59 + 122973662 TTCGCTGACAGGTTTCACAAATGGCATTAA-----aaaacaaaacaaaa---cagaattaaaaacaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29500570 59 + 172585720 TTCACCAACAGGTTTCACAGACGGCATTAA-----AAAACAAAACAAAA---CAAAATTTTAAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29161685 59 - 170955103 TTCACCAACAGGTTTCACAGACGGCATTAA-----AAAACAAAACAAAA---CAAAATTTTAAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2154009 59 -   2996164 TTCACCAACAGGTTTCACAGACGGCATTAA-----AAAACAAAACAAAA---CAAAATTTTAAAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2034778 64 -   2157725 TTCACCGACAGGTTTCACAGACGGCATTaaaaaacaaaacaaaacaaaa---caaaatttaaaaaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28465158 59 -  71996105 TTCACCGACAGGTTTCACAGATGGCATTAA-----AAAACAAAACAAAC---CAAAATTTAAAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2172653 59 +   2316924 TTCACCAACAGGTTTCACAGACGGCATTAA-----AAAACAAAACAAAA---CAAAATTTAAAAAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2037020 60 -   3067355 TTCACTGACAGATTTCACAGATGGCaataaa----aaaactaaacaaaa---caaaactaaaaaaaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171556510 62 - 171630274 TTCACTAACAGGTTTCACAAATGGCATGAA-----AAAACAAAACAAAGAATCAATTTTTTTAAAAA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1664894 14 -   2232465 -----------------------------------GATATATGATAAAA------------------
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            246377 123 -    859332 I
e canFam3.chr35             26123427  1 +  26524999 I

a score=192438.000000
s hg38.chr6_GL000254v2_alt    313453 23 +   4827813 GTATCTGAATTCTTCATTTTCAA
s panTro5.chr6              29288501 23 + 175400573 GTATCTGAATTCTTCATTTTCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29534685 23 + 173848474 GTATCTGAATTCTTCATTTTCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5331720 23 +   6154872 GTATCTGAATTCTTCATTTTCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74344552 23 + 122973662 GTATCTGAATTCTTCATTTTCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29500629 23 + 172585720 GTATCTGACTTCTTCATTTTCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29161744 23 - 170955103 GTATCTGACTTCTTCATTTTCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2154068 23 -   2996164 GTATCTGACTTCTTCATTTTCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2034842 23 -   2157725 GTATCTGAATTCTTCATTTTCAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28465217 23 -  71996105 GTATCTGAATTCTTCATTTTCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2172712 23 +   2316924 GTATCTGACTTCTTCATTTTCAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2037080 23 -   3067355 GTATCTGAATTCTTCATTTTCAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171556572 23 - 171630274 GTATCTGAATCTTTCATTTTCAA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1664908 22 -   2232465 -TATTTACATTCTTCATTTTAAA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26123428 23 +  26524999 GTATTTTAGTTCTTCGTTTCCAA
i canFam3.chr35            I 1 C 0
e dasNov3.JH570037            246377 123 -    859332 I

a score=294362.000000
s hg38.chr6_GL000254v2_alt    313476 36 +   4827813 TTTAATCTATCTTTCTCGCTTTTGTT---------------TCTGCTG-GAT
s panTro5.chr6              29288524 36 + 175400573 TTTAATCTATCTTTCTCGCTTTTGTT---------------TCTGCTG-GAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29534708 36 + 173848474 TTTAATCTATCTTTCTCGCTTTTGTT---------------TCTGCTG-GAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5331743 36 +   6154872 TTTAATCTATCTTTCTCGCTTTTGTT---------------TCTGCTG-GAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74344575 36 + 122973662 TTTACTCTATGTTTCTCGCTTTTTTT---------------TCTGCTG-GAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29500652 36 + 172585720 TTTAATCTATATTTCTCGCTTTTGTT---------------TCTGCTG-GAT
i rheMac8.chr4             C 0 I 116
s macFas5.chr4              29161767 36 - 170955103 TTTAATCTATATTTCTCGCTTTTGTT---------------TCTGCTG-GAT
i macFas5.chr4             C 0 I 116
s macNem1.NW_012011356v1     2154091 36 -   2996164 TTTAATCTATATTTCTCGCTTTTGTT---------------TCTGCTG-GAT
i macNem1.NW_012011356v1   C 0 I 207
s cerAty1.NW_012001495v1     2034865 36 -   2157725 TTTAATCTATATTTCTCGCTTTTGTT---------------TCTGCTG-GAT
i cerAty1.NW_012001495v1   C 0 I 116
s chlSab2.chr17             28465240 36 -  71996105 TTTAATCTATATTTCTCGCTTTTGTT---------------TCTGCTG-GAT
i chlSab2.chr17            C 0 I 116
s manLeu1.NW_012104165v1     2172735 36 +   2316924 TTTAATCTATATTTCTCGCTTTTGTT---------------TCTGCTG-GAT
i manLeu1.NW_012104165v1   C 0 I 116
s colAng1.NW_012115566v1     2037103 36 -   3067355 TTTAATCTGTATTTCTCGCTTTTGTT---------------TCTGCTG-GAT
i colAng1.NW_012115566v1   C 0 I 116
s calJac3.chr4             171556595 36 - 171630274 TTTAATCTGCATTTCTGTGTTTTGTT---------------TCTGCTG-GAT
i calJac3.chr4             C 0 I 116
s otoGar3.GL873742           1664930 35 -   2232465 -TTAATCTACATTTTTCTCTTTTATT---------------TTTGGGA-GAT
i otoGar3.GL873742         C 0 I 60
s canFam3.chr35             26123451 36 +  26524999 TTTAATCTACATTTACCTCTCATATT---------------TCTGCTG-GAT
i canFam3.chr35            C 0 C 0
s dasNov3.JH570037            246500 52 -    859332 TTTAATCTTTCCTTCCTAATATAGTTAGAAAGGGGGATTTCTCTGCAGAGAT
i dasNov3.JH570037         I 123 I 3

a score=22920.000000
s hg38.chr6_GL000254v2_alt    313512 2 +   4827813 CA
s panTro5.chr6              29288560 2 + 175400573 CA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29534744 2 + 173848474 CA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5331779 2 +   6154872 CA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74344611 2 + 122973662 CA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29500804 2 + 172585720 CA
i rheMac8.chr4             I 116 C 0
s macFas5.chr4              29161919 2 - 170955103 CA
i macFas5.chr4             I 116 C 0
s macNem1.NW_012011356v1     2154334 2 -   2996164 CA
i macNem1.NW_012011356v1   I 207 C 0
s cerAty1.NW_012001495v1     2035017 2 -   2157725 CA
i cerAty1.NW_012001495v1   I 116 C 0
s chlSab2.chr17             28465392 2 -  71996105 CA
i chlSab2.chr17            I 116 C 0
s manLeu1.NW_012104165v1     2172887 2 +   2316924 CA
i manLeu1.NW_012104165v1   I 116 C 0
s colAng1.NW_012115566v1     2037255 2 -   3067355 CA
i colAng1.NW_012115566v1   I 116 C 0
s calJac3.chr4             171556747 2 - 171630274 CA
i calJac3.chr4             I 116 C 0
s otoGar3.GL873742           1665025 2 -   2232465 CA
i otoGar3.GL873742         I 60 C 0
s canFam3.chr35             26123487 2 +  26524999 CA
i canFam3.chr35            C 0 I 116
s dasNov3.JH570037            246555 2 -    859332 CA
i dasNov3.JH570037         I 3 C 0

a score=3182758.000000
s hg38.chr6_GL000254v2_alt    313514 390 +   4827813 ----ATATTTATTC--------------------------------TCAGACTTCTGAAATAA----------AACCAGCCCATACAGATC-------TAAG-TTCTTTTTCTTCTACTTTCTACAAATTG-TTTTACCAATCCAGGCATACTGTTTCTCCAAGAGAT--TAAGGATGAACATTACTGTGATCCAGAGGGAGTTCCTTTGCCATTCTACTTCTCGACTTTTGTAGAATCCACAC--TATGGAAAATAGATCCCGGTTAAGCATTTTTTTCTCCAGGGCTGTAA--ATTTCTCATGATTTCCCTGCAG-TGCCACGGAGAATTCTGCTTTTCCCAAAGTGTGTTAGGGTAGAGATTCTCAACAGGAC-----TCCTCCTTCTCGAATATATGACT----------TCAAGTAAGAGGATGAAACCTGTCACAAATTCTTACTTCTTGTTCTGAGTTTA
s panTro5.chr6              29288562 390 + 175400573 ----ATATTTATTC--------------------------------TCAGACTTCTGAAATAA----------AACCAGCCCATACAGATC-------CAAG-TTCTTTTTCTTCTACTTTCTACAAATTG-TTTTACCAATCCAGGCATACTGTTTCTCCAAGAGGT--TAAGGATGAACATTACTGTGATCCAGAGAGAGTTCCTTTGCCATTCTACTTCTTGACTTTTGTAGAATCCACAC--TATGGAAAATAGATCCCGGTTAAGCATTTTTTTCTCCAGGGCTGTAA--ATTTCTCATGATTTCCCTGCAG-TGCCACGGAGAATTCTGCTTTTCCCAAAGTGTGTTAGGGTAGAGATTCTCAACAGGAC-----TCCTCCTTCTTGAATATATGACT----------TCAAGTAAGAGGATGAAACCTGTCACAAATTCTTACTTCTTGTTCTGAGTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29534746 390 + 173848474 ----ATATTTATTC--------------------------------TCAGACTTCTGAAATAA----------AACCAGCCCATACAGATC-------TAAG-TTCTTTTTCTTCTACTTTCTACAAATTG-TTTTACCAATCCAGGCATACTGTTTCTCCAAGAGAT--TAAGGATGAACATTACTGTGATCCAGAGAGAGTTCCTTTGCCATTCTACTTCTTGACTTTTGTAGAATCCACAC--TATGGAAAATAGATCCCGGTTAAGCATTTTTTTCTCCAGGGCTGTAA--ATTTCTCATGATTTCCCTGCAG-TGCCACGGAGAATTCTGCTTTTCCCAAAGTGTGTTAGGGTAGAGATTCTCAACAGGAC-----TCCTCCTTCTCGAATATATGACT----------TCAAGTAAGAGGATGAAACCTGTCACAAATTCTTACTTCTTGTTCTGAGTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5331781 390 +   6154872 ----ATATTTATTC--------------------------------TCAGACTTCTGAAATAA----------AACCAGCCCATACAGATC-------TAAG-TTCTTTTTCTTCTACTTTCTACAAATTG-TTTTACCAATCCAGGCATACTGTTTCTCCAAGAGAT--TAAGGATGAACATTACTGTGATCCAGAGAGAGTTCCTTTGCCATTCTACTTCTCGACTTTTGTAGAATCCACAC--TATGGAAAACAGATCTCGGTTAAGCATTTTTTTCTCCAGGGCTGTAA--ATTTCTCATGATTTCCCTGCAG-TGCCATGGTGAATTCTGCTTTTCCCAAAGTGTGTTAGGGTAGAGATTCTCAACAGGAC-----TCCTCCTTCTCGAATATATGACT----------TCAAGTAAGAGGATGAAACCTGTCACAAATTCTTACTTCTTGTTCTGAGTTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74344613 390 + 122973662 ----ATATTTATTC--------------------------------TCAGACTTCTGAAATAA----------AACCAGCCCATACAGATC-------TAAG-TTCTTTTTCTTCTACTTGCTACAAATTG-TTGTACCAATCCAGGCATACTGTTTCTCCAAGAGAT--TAAGGATGAACATTACTGTGATCCAGAGAGAGTTCCTTTGCCATTCTACTTCTCCACTTTTGTAGAATCCACAC--TATGGAAAATAGATCCCGGTTAAGCATTTTTTTCTCCAGGGCTGTAA--ATTTCTCATGATTTCCCTTCAG-TGCCACGGTGAATTCTGCTTTTCCCAAAGTGTGTTAGGGTAGAGATTCTCAACAGGAC-----TCCTCCTTCTCGAATATATGACT----------TCAAGTAAGAGGATGAAACCTGTCACAAATTCTTACTTCTTGTTCTGAGTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29500806 390 + 172585720 ----ATATTTATTC--------------------------------TCAGACTTCCGAAATAA----------AACCAGCCCATACAGATC-------TAAG-TTCTTTTTCTTCTACTTTCTACAAATTG-TTTTACCAACCCGGACATACTGTTTCTCCAAGAGAT--TAAGGATGAACATTACTGTGATCCAGAGAGAGTTCTTTTGCCATTCTACTTCTCGACTTTTGTAGAGTCCACAC--TATGGAAAATAGATCCCGGTGAAGCA-TTTTTTCTCCAGGGCTGTAA--ATTTCTCATGGTTTCCCTGTGGTTGCCATGGTAAATTCTGCTTTTCCCAAAGTGTGTTAGGGTAGAGGTTCTCAACAGGAC-----TCCTCCTTCTTGAATATATGACT----------TCAAGTAAGAGGATGAAACCTGTCACAAATTCTTACTTCTTGTTCTGAGTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29161921 390 - 170955103 ----ATATTTATTC--------------------------------TCAGACTTCCGAAATAA----------AACCAGCCCATACAGATC-------TAAG-TTCTTTTTCTTCTACTTTCTACAAATTG-TTTTACCAACCCGGACATACTGTTTCTCCAAGAGAT--TAAGGATGAACATTACTGTGATCCAGAGAGAGTTCTTTTGCCATTCTACTTCTCGACTTTTGTAGAGTCCACAC--TATGGAAAATAGATCCCGGTGAAGCA-TTTTTTCTCCAGGGCTGTAA--ATTTCTCATGGTTTCCCTGTGGTTGCCATGGTAAATTCTGCTTTTCCCAAAGTGTGTTAGGGTAGAGGTTCTCAACAGGAC-----TCCTCCTTCTTGAATATATGACT----------TCAAGTAAGAGGATGAAACCTGTCACAAATTCTTACTTCTTGTTCTGAGTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2154336 390 -   2996164 ----ATATTTATTC--------------------------------TCAGACTTCCGAAATAA----------AACCAGCCCATACAGATC-------TAAG-TTCTTTTTCTTCTACTTTCTACAAATTG-TTTTACCAACCCGGACATACTGTTTCTCCAAGAGAT--TAAGGATGAACATTACTGTGATCCAGAGAGAGTTCTTTTGCCATTCTACTTCTCGACTTTTGTAGAGTCCACAC--TATGGAAAATAGATCCTGGTGAAGCA-TTTTTTCTCCAGGGCTGTAA--ATTTCTCATGGTTTCCCTGAGGTTGCCATGGTAAATTCTGCTTTTCCCAAAGTGTGTTAGGGTAGAGGTTCTCAACAGGAC-----TCCTCCTTCTTGAATATATGACT----------TCAAGTAAGAGGATGAAACCTGTCACAAATTCTTACTTCTTGTTCTGAGTTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2035019 390 -   2157725 ----ATATTTATTC--------------------------------TCAGACTTCCGGAATAA----------AACCAGCCCATACAGATC-------TAAG-TTCTTTTTCTTCTACTTTCTACAAATTG-TTTTACCAACCCGGACATACTGTTTCTCCAAGAGAT--TAAGGATGAACATTACTGTGATCCAGAGAGAGTTCTTTTGCCATTCTACTTCTCGACTTTTGTAGAGTCCACAC--TATGGAAAATAGATCCCGGTGAAGCA-CTTTTTCTCCAGGGCTGTAA--ATTTCTCATGGTTTCCCTGCGGTTGCCATGGCGAATTCTGCTTTTCCCAAAGTGTGTTAGGGTAGAGGTTCTCAACAGGAC-----TCCTCCTTCTTGAATATATGACT----------TCAAGTAAGAGGATGAAACCTGTCACAAATTCTTACTTCTTGTTCTGAGTTTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28465394 391 -  71996105 ----ATATTTATTC--------------------------------TCAGACTTCCGAAATAA----------AACCAGCCCATACAGATC-------TAAG-TTCTTTTTCTTCTACTTTCTACAAATTG-TTTTACCAACCCGGACATACTGTTTCTCCAAGAGAT--TAAGGATGAACATTACTGTGATCCAGAGAGAGTTCTTTTGCCATTCTACTTCTCGACTTTTGTAGAGTCCACAC--TATGGAAAATAGATCCCGGTGAAGCATTTTTTTCTCCAGGGCTGTAA--ATTTCTCATGGTTTCCCTGCGGTTGCCATGGTGAATTCTGCTTTTCCCAAAGTGTGTTAGGGTAGAGATTCTCAACAGGAC-----TCCTCCTTCTTGAATATATGACT----------TCAAGTAAGAGGATGAAACCTGTCACAAATTCTTACTTCTTGTTCTGAGTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2172889 390 +   2316924 ----ATATTTATTC--------------------------------TCAGACTTCCGAAATAA----------AACCAGCCCATACAGATC-------TAAG-TTCCTTTTCTTCTACTTTCTACAAATTG-TTTTACCAACCCGGACATACTGTTTCTCCAAGAGAT--TAAGGATGAACATTACTGTGATCCAGAGAGAGTTCTTCTGCCATTCTACTTCTCGACTTTTGTAGAGTCTACAC--TATGGAAAATAGATTCCGGTGAAGCA-TTTTTTCTCCAGGGCTGTAA--ATTTCTCATGGTTTCCCTGCGGTTGCCATGGCGAATTCTGCTTTTCCCAAAGTGTGTTAGGGTAGGGGTTCTCAACAGGAC-----TCCTCCTTCTTGAATATATGACT----------TCAAGTAAGAGGATGAAACCTGTCACAAATTCTTACTTCTTGTTCTGCGTTTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2037257 390 -   3067355 ----ATATTTGTTC--------------------------------TCAGACTTCTGAAATAA----------AACTAGCCCATACAGATC-------TAAG-TTCTTTTTCTTCTACTTTCTACAAATTG-TTTTACCAACCCATGCATACTGTTTCTCCAAGAGAT--TAAGGATGAACATTACTGCGATCCAGAGAGAGTTCCTTTGCCATTCTACTTCTCGGCTTTTGTAGAGTCCACAC--TATGGAAAATAGATCCTGGTGAAGCA-TTTTTTCTCCAGGGCTGTAA--ATTTCTCATGATTTCCCTGTGGTTGCCATGGTGAATTCTGCTTTTCCCAAAGTGTGTTAGGGTAGAGATTCTCAACAGGAC-----TCCTCCTTCTTGAATATATGACT----------TCAAGTAAGAGGATGAAACCTGTCACAAATTCTTACTTCTTGTTCTGAGTTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171556749 378 - 171630274 ----ATATTTATTC--------------------------------TCAGGCTTCTGAAGTAA----------AATCAGCCCATATAAATC-------TAAG-TTCTTTTTCTCCTACTTTCTAGAAATTG-TTTTACCAACCCAGGTATACTGTTT-TTCAGGCGAT--TAAGGATGAACGTAGCAGTCATCCAGAGAGAGTTTTTTTGCCATTCTACTTCTCAACTCTTGTAGAGACCACAC----TGGAAAATAGATCTCCGTTAAACA-TTTTTTCTCCAGGGCTGTAA--ATTTCTCATGATTTCCCTGCAG-TTCCATGGAGAATCCTGTTTTTCCCAAAGTGTGGAAGGGTAGAGATTCTCAGCAGGAC-----TCCTCCATCTTGAATAT------------------AAGTAAGAGGATGAAACCTGTCACAAATTCTTGCTTCCTGTTCTATGTTTA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1665027 415 -   2232465 ----A-ATTTAATCTTTCATTATATAGATAAAAGGAGGAGTTTCCTTCAGACTTCTGAAGGAA----------AACAAGAATAATCAGACTGTATGGGTAAG-TACTTTTGCTTTTATTTCCCACAAATTG-------------AAGCACACTATTT-TTCAAGAGGTAGTAAAGATTGATGTTACTATAACTCAGAGAGAATTCCT------TTTTACCTCTCAACCAGTGTAGAGTTCATAC--TGTGAAAAATAGATTGTTGTCAGGCA-TTTACTGGCCAGGGTTGCAA--CTTTTTTGTGTTTTCCCTGCAG-TGCCATTGTGAATTCTGCTTTTCCTTAAGTGTGTTAAGGTAGCGAGTTTCAACAGGACTCAGTTCCTCCTTCTTGTACATGTGACT----------TCAGATAAGGAAATAAAACCTGTCACAAATTTGTACTGCTTGTTCTTACTTAG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26123605 389 +  26524999 ----ATCTTTATGC--------------------------------CAAGTATTCTAGAAGAA-AGCCAGAAGAATCAGTCTATAAAG-TC-------TAAGTTTTTTTTTCTTTTGCTTCCTACAAGAAT-TTTCACCAACCCAGGCACACTTTTT-TCCAAGAGATATTAAAGATTAACATTACTGTAATCCAGAGAGATTTCCTCTGATATACTGCTTCTTGAGTAGTGAGGAGCCCACAACGTGTGGAAAA---------GTCAAGTA--TTTGCATTCAGAAATGTAGCTACTTTTCAT--CTTCCCAGCAA-TGCACCAGAGACTTTT-CTGTTCCCAAGGAGC-TCAAGGAACTGATTCTGGACAGGAA-----TCCTCATTCGTGACCGTTTGACT----------TCACATAAGTGGATGGAACCTGTCACAGATTCTTACTAGGTGTTCTGACTTTA
i canFam3.chr35            I 116 I 2185
s dasNov3.JH570037            246557 410 -    859332 ATATTTATTTACTC--------------------------------TTAGACTTCTTAAAGGAAAACCAGAAGAACTGGGGCATACAGATC-------TAAG-TTCTCTTTTTTCTATTTCCCCAAAGTTGTTTTTACCAACCCAAGTACACTATTT-TCCAAGTGATACTAAAGATTAATGTTGAAGTGATCCAGAGAGAGTTC-TTTGTCAT-CTACCTCTTGGTCAGCGTAGAGCCTACAG--TGGAAAACGCAGGTCCTGGGAAAGCA-TTTGTGCTCCAGGGCTGAGG--CTCTCTCCTACTGTCCCTGCAG-TGACACTGTGAGAACTACTTTTCTCGAAGTGTATTAAGGTACAAATTCTCCATAGGAC-----TCCTCCTCCTTGAACATGTGACTTCAGGTGAGCTCAGGTGAGGGAATCTAATCTGTCACAAGTT-TCACTGTT--TTCTGGCATTA
i dasNov3.JH570037         C 0 C 0

a score=3428048.000000
s hg38.chr6_GL000254v2_alt    313904 443 +   4827813 AATCAACCTGCAAG-TAGGTCTTGACCATAGA------------GAAACATTAGGA-AAAGCAACCGGATAATTCAGAATCAGAATTGAACAAAATTTCCCAGTATTACCTGAAGACTCAGATAATCA-AA-AAGA-TTA-----TCTAAACCATTGGGACTGCATCCAATTAACTTTACTAGAGTACAGTGTCATAGAAAATGCCAGCC-------------TAGAATTAGACCATACCCTAATATTTCACTAGGGCAGGTTTAGTAGATGTAAAAGTTATTTAATATGAAGG-AAAACTATAGGACAAAGAAATAAGAAAATGTATTTTCATATTTTTTT------GGTTGTGAATGTATTATAATATAAAATTTACTCTTAAATAATGTAGATTTCCAACACTACAATTATA------CTTAGC--TACAGAAAAA--TCTTACCATTCAAAGCACAAATATTGATTGTGGAACTAAACTTGCTCTGAGCAG
s panTro5.chr6              29288952 443 + 175400573 AATCAACCTGCAAG-TAGGTCTTGACCATAGA------------GAAACATTAGGA-AAAGCAACCGGATAATTCAGAATGAGAATTGAACAAAATTTCTCAGTATTACCTGAAGACTCAGATAATCA-AA-AAGA-TTA-----TCTAAACCATTGGGACTGCATCCAATTAACTTTACTAGAGTACAGTGTCATAGAAAATGCCAGCC-------------TAGAATTAGACCATACCTTAATATTTCACTAGGGCAGGTTTAGTAGATGTAAAAGTTATTTAATATGAAGG-AAAACTATAGGACAAAGAAATAAGAAAATGTATTTTCATATTTTTTT------GGTTGTGAATGTATTATAATATAAAATTTACTCTTAAATAATGTAGATTTCCAACACTACAATTATA------CTTAGC--TACAGAAAAA--TCTTACCATTCAAAGCACAAATATTGATTGTGGAACTAAACTTGCTCTGAGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29535136 443 + 173848474 AATCAACCTGCAAG-TAGGTCTTGACCATAGA------------GAAACATTAGGA-AAAGCAACCGGATAATTCAGAATCAGAATTGAACAAAATTTCTCAGTATTACCTGAAGACTCAGATAATCA-AA-AAGA-TTA-----TCTAAACCATTGGGACTGCATCCAATTAACTTTACTAGAGTACAGTGTCATAGAAAATGCCAGCC-------------TAGAATTAGACCATACCCTAATATTTCACTAGGGCAGGTTTAGTAGATGTAAAAGTTATTTAATATGAAGG-AAAACTATAGGACAAAGAAATAAGAAAATGTATTTTCATATTTTTTT------GGTTGTGAATGTATTATAATATAAAATTTACTCTTAAATAATGTAGATTTCCAACACTACAATTATA------CTTAGC--TACAGAAAAA--TCTTACCATTCAAAGCACAAATATTGATTGTGGAACTAAACTTGCTCTGAGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5332171 437 +   6154872 AATCAACCTGCAAG-TAGGTCTTGACCATAGA------------GAAACATTAGGA-AAAGCAACTGGATAATTCAGAATCAGAATTGAACAAAATTTCCCAGTATTACCTGAAGACTCAGATAATCA-AA-AAGA-TTA-----TCTAAACCATTGGGACTGCATCCAATTAACTTTACTAGAGTACAGTGTCATAGAAAATGCCATCC-------------TAGAATTAGACCATACCCTAATATTTCACTAGGGCAGGTTTAGTAGATGTAAAAGTTACTTAATATGAAGG-AAAACTATAGGACAAAGAAATAAGAAAATGTATTTTCATATTTTTTT------GGTTGTGAATGTATTATAATATAAAAT------TTAAATAATGTAGATTTCCAACACTACAATTATA------CTTAGC--TACAGAAAAA--TCTTACCATTCAAAGCACAAATATTGATTGTGGAACTAAACTTGCTCTGAGCAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74345003 436 + 122973662 AATCAACCTGCAAGTTAGATCTTG---ATAGA------------GAAACATTAGGA-AAAGCAACCAGATAATTCAGAATCAGAATTGAACAAAATTTCCCAGTATTACCTGAAGACTCAGATAATCA-AA-AAGATTTA-----TCTAAACCATTGGGACTGTATCCAATTAACTTTACTAGAGTACAGTGTCATAGAAAATGCCAGCT-------------TAGAATTAGACCATACCCTAATATTTCACTAGGGCAGGTTTGGTAGATGTAAAAGTTATTTAATATGAAGG-AAAACTATAGGACAAGGAAATAAGAAAATGTATTTTCATATTTTTTT------GGTTGTGAAT------TATTATAAAATTTACTCTTAAATATTGTAGATTTCCAACACTACAGTTATA------CTTAAC--TATAGAATAA--TCTTACTATTCAAAGCACAAATATTGATTGTGGAACGAAACTTGCTCTGAGCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29501196 456 + 172585720 AATCAACCTGCAAG-TAGGTCTTGACCAAACA------------GAAACATTATGA-AAAGCAACCAGATAATTCAGAATCAGAATTGAGCAAAATTTCCCAATATTACCTGAAGACTCAGATAATCA-AA-AAGA-TTA-----TCTAAACCATTGGGACTGCATCCAATTAACTTTACTAGAGTACAGTGTCATAGAAAATACCAGCTAATGAAACATTTGGAGAATTAGACTATACCCTAATATTTCACTAGGGCAGGTTTAGTAGATGTAAAAGTTATTTAATATGAAGG-AAAACTATAGGACAAGGAAATAAGAAAATGTATTTTCATATTTTCTT-----AGGTTGTGATTGTATTATAA-ATAAAATTTACTCTTAAATAATGTAGATTTCCAACACTATAATTATA------GTTAAC--TATAGAATAA--TCTTACCATTCAAAGCACAAATATTGATTGTGGAACTAAACTTGCTCTGAGCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29162311 456 - 170955103 AATCAACCTGCAAG-TAGGTCTTGACCAAACA------------GAAACATTATGA-AAAGCAACCAGATAATTCAGAATCAGAATTGAGCAAAATTTCCCAATATTACCTGAAGACTCAGATAATCA-AA-AAGA-TTA-----TCTAAACCATTGGGACTGCATCCAATTAACTTTACTAGAGTACAGTGTCATAGAAAATACCAGCTAATGAAACATTTGGAGAATTAGACTATACCCTAATATTTCACTAGGGCAGGTTTAGTAGATGTAAAAGTTATTTAATATGAAGG-AAAACTATAGGACAAGGAAATAAGAAAATGTATTTTCATATTTTCTT-----AGGTTGTGATTGTATTATAA-ATAAAATTTACTCTTAAATAATGTAGATTTCCAACACTATAATTATA------GTTAAC--TATAGAATAA--TCTTACCATTCAAAGCACAAATATTGATTGTGGAACTAAACTTGCTCTGAGCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2154726 456 -   2996164 AATCAACCTGCAAG-TAGGTCTTGACCAAACA------------GAAACATTATGA-AAAGCAACCAGATAATTCAGAATCAGAATTGAGCAAAATTTCCCAATATTATCTGAAGACTCAGATAATCA-AA-AAGA-TTA-----TCTAAACCATTGGGACTGCATCCAATTAACTTTACTAGAGTATAGTGTCATAGAAAATGCCAGCTAATGAAGCATTTGGAGAATTAGACTATACCCTAATATTTCACTAGGGCAGGTTTAGTAGATGTAAAAGTTATTTAATATGAAGG-AAAACTATAGGACAAGGAAATAAGAAAATGTATTTTCATATTTTCTT-----AGGTTGTGAATGTATTATAA-ATAAAATTTACTCTTAAATAATGTAGATTTCCAACACTATAATTATA------GTTAAC--TATAGAATAA--TCTTACCATTCAAAGCACAAATAGTGATTGTGGAACTAAACTTGCTCTGAGCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2035409 456 -   2157725 AATCCACCTGCAAG-TAGGTCTTGACCAAACA------------GAAACATTATGA-AAAGCAACCAGATAATTCAGAATCAGAATTGAGCAAAATTTCCCAATATTACCTGAAGACTCAGATAATCA-AA-AAGA-TTA-----TCTAAACCATTGGGACTGCATCCAATTAACTTTACTAGAGTACAGTGTCATAGAAAATGCCAGCTAATGAAACATTTGGAGAATTAGACTATACCCTAATATTTCGCTAGGGCAGGTTTAGTAGATGTAAAAGTTATTTAATATGAAGG-AAAACTATAGGACAAGGAAATAAGAAAATGTATTTTCATATTTTCTT-----AGGTTGTGATTGTATTATAA-ATAAAATTTACTCTTAAATAATGTAGATTTCCAACACTATAATTATA------CTTAAC--TATAGAATAA--TCTTACCATTCAAAGCACAAATATTGATTGTGGAACTAAACTTGCTCTGAGCAG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28465785 454 -  71996105 AATCAACCTGCAAG-TAGGTCTTGACCAAACA------------GAAACATTACGA-AAAGCAACCAGATAATTCAGAATCAGAATTGAGCAAAATTTCCCAATATTACCTGAAGACTC--ATAATCA-AA-AAGA-TTA-----TCTAAACCATTGGGACTGCATCCAATTAACTTTACTAGAGTACAGTGTCATAGAAAAAGTCAGCTAATGAAACATTTGGAGAATTAGACTATATTCTAATATCTCACTAGGGCAGGTTTAGTAGATGTAAAAGTTATTTAATATGAAGG-AAAACTATAGGACAAGGAAATAAGAAAATGTATTTTCATATTTTTTT-----AGGTTGTGATTGTATTATAA-ATAAAATTTACTCTTAAATAATGTAGATTTCCAACACTATAATTATA------TTTAAC--TATAGAATAA--TCTTACCATTCAAAGCACAGATATTGATTGTGGAACTAAACTTGCTCTGAGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2173279 456 +   2316924 AATCAACCTGCAAG-TAGGTCTTGACCAAACA------------GAAACATTATGA-AAAGCAATCAGATAATTCAGAATCAGAATTGAGCAAAATTTCCTAATATTACCTGAAGACTCAGATAATCA-AA-AAGA-TTA-----TCTAAACCATTGGGACTGCATCCAATTAACTTTACTAGAGTACAGTGTCATAGAAAATGCCAGCTAATGAAACATTTGGAGAATTAGACTGTACCCTAATATTTCACTAGGGCAGGTTTACTAGATGTAAAAGTTATTTAATATGAAGG-AAAAGTATAGGACAAGGAAATAAGAAAATGTATTTTCATATTTTCTT-----AGGTTGTGATTGTCTTATAA-ATAAAATTTACTCTTAAATAATGTAGATTTCCAACACTATAATTATA------CTTAAC--TATAGAATAA--TCTTACCATTCAAAGCACAAATATTGATTGTGGAACTAAACTTGCTCTGAGCAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2037647 456 -   3067355 AATCAACCTGCAAG-TAGGTCTTGACCAAACA------------GAAACATTATGA-AAAGCAACCAGATAATTCAGAAACAGAATTGAACAAAATTTCCCAATATTACCTGAAGACTCAGATAATCA-AA-AAGA-TTA-----TCTAAACCAATGGGACTGCATCCAATTAACTTTACTAGAGTACAGTGTCATAGAAAATGCCAGCTAATGAAACATTTGGAGAATTACACTATACCCTAATATTTCACTAGGGCAGGTTTAGTAGATGTAAAAGTTATTTAATATGAAGG-AAAACTATAGGACAAGGAAATAAGAAAATGTATTTTCATATTTTCTT-----AGGTTGTGAATGTATTATAA-ATAAAATTTATTCTTAAATAATGTAGATTTCCAACACTACAATTATA------CTTAAC--TATAGAATAA--TCTTACCATTCAAAGCACAAATAGTGATTGTGGAACTAAACTTGCTCTGAGCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171557127 460 - 171630274 AATCAATCTGCAAA-TAGGTCTTGACCATAGA------------GAAGCATTATGC-AAAGCAACCAGATAATTCAGAATCAGAATTGAGCAAAATTTCCTTGTATTACCTGAAGACCCAGGTAATCA-AA-AAGA-TTA-----TTTAAACCATCGGGACTGAATCTAATTGACTTTACTGGAATACAGTGTCATAGAAAATGCCAGCTAATGAAACATTTGGAGAATTAGGCCAGACCCTAATATTTCACTAGGGCAGGTTTAGTAGATGCAAAAGTTATTTAATATGAGGGAAAAACTACAGGAAAATGAAATAAGAAAATGAATTTTCATATTTTTTTTCT--AGGTGGTAAATGTATTATAA-ATAACATTTACTCTTAAATAATGTAGATTTCCAGCACTACAATTATA------CTTAAC--TATGGAATAA--TCTTACCATTCAAAGCACAAATATTGATTCTGGAAATAAACTTTCTCTGAGCAA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1665442 463 -   2232465 AGTCAACATACAAA-TAGGTCTTGACCATAGA------------GAAACATTATGA-AAAGCAATCATATAATTCAGAATAAGAATTACACAAAATTGCCCAATATTGCCTAAAAACCTAGATCATCAGGA-AAGA-TTATTGGTTCTAAACCATACAGACTGCATCCAATTA--CTCACTAGAGTAAGGTGCCATGGAAAATA----------AAACATTTTCAGAATTAGACCATATCCTGATATTTCACTAGAGCAGATTTAATAGATGTAAAAGTTATTTAACATAAAGG-GAAGTGATAGGACAGGAAAATTACAAGGTATATTTTCAGAATTTTTTCTTTAAGTAAATGAATGTATTACAA-ATAAAACTTGCTCTTAAATAATGTGGATTTCCAACCTTACAATTATAGCAAATGTTAACTTTATAAGATAA--TCTTACCATTCAGAGCACGCATGTTGATTCTGGAAATAAACTTGCTCTAAGTAG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            246967 475 -    859332 TATCAACCTGTGAA-TAAGTCTTGAGCGAACATTACCAGATAATAAAATAAGATAATAAGGTAATCAGATAATTCA-AATAAGAATTAAACAAAATTTCACAACTTTGACTGAAAATCCAGGTAATCA-AGCAAGG-TTA-----TCTTCACCACTGGGACTGCCTCCAAGTGACC-CACTAGAGTAAACTGCTGTGGAATAAGCCAGCTGATGAAATGGTTGGATAATGAGACCACCTCCTGCTATTTCACAAGGACAAATTCAGTAGAAGCA----TTATTCAATATGAAG--AAAGCTAAAGGACAGGGAAATTAGAA-ATGTACTTTCAGATTTTTTT-CTGTAGATAGTGAATGTATTACAAAGAAAAAGGCTTTCCTTAATTAAGTGCAATTCCAACCCTAGAATTATAAAATAGATTGACTCTATAAAATAATCTCTTACCATTAATGGTAT--ACATTGATTTTGGAATTAAAACTTCTCTGAGGAG
i dasNov3.JH570037         C 0 I 725
e canFam3.chr35             26123994 2185 +  26524999 I

a score=158787.000000
s hg38.chr6_GL000254v2_alt    314347 21 +   4827813 ATATCATTTAAATGAGGTACC
s panTro5.chr6              29289395 21 + 175400573 ATATCATTTAAATGAGGTACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29535579 21 + 173848474 ATATCATTTAAATGAGGTACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5332608 21 +   6154872 ATATCATTTAAATGAGGTAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74345439 21 + 122973662 GTATCATTTAAATGAGGTACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29501652 21 + 172585720 ATATCATTTAAATAAGGTACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29162767 21 - 170955103 ATATCATTTAAATAAGGTACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2155182 21 -   2996164 ATATCATTTAAATAAGGTACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2035865 21 -   2157725 ATATCATTTAAATAAGGTACC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28466239 21 -  71996105 ATATCATTTAAATAAGGTACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2173735 21 +   2316924 ATATCATTTAAATAAGGTACC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2038103 21 -   3067355 GTATCATTTAAATAAGGTACC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171557587 21 - 171630274 ATAGCATTTAAATAAGTTATC
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1665905 21 -   2232465 GTATCATTTAAATAAGGTACC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            247442 725 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I

a score=995298.000000
s hg38.chr6_GL000254v2_alt    314368 128 +   4827813 TCTAGTGGTTATCTCTGATACCCATGGTCAGAACAGTTGTATTTGAAAG---AGATGTTTAATCCCCAAAGCTCTAAACAGTAAGACCAGAATCATAAGATTTACATTTTTTCTCAGT-------TGTTT------TGGTGACC
s panTro5.chr6              29289416 128 + 175400573 TCTAGTGGTTATCTCTGATACCCATGGTCAAAACAGTTGTATTTGAAAG---AGATGTTTAATCCCCAAAGCTCTAAACAGTAAGACCAGGATCATAAGATTTACATTTTTGCTCAGT-------TGTTT------TGGTGACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29535600 128 + 173848474 TCTAGTGGTTATCTCTGATACCCATGGTCAAAACAGTTGTATTTGAAAG---AGATGTTTAATCCCCAAAGCTCTAAACAGTAAGACCAGGATCATAAGATTTACATTTTTGCTCAGT-------TGTTT------TGGTGACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5332629 128 +   6154872 TCTAGTGGTTATCTCTGATACCCATGGTCAAAACAGTTGTATTTGAAAG---AGATGTTTAATCCCCAAAGCTCTAAACAGTAAGACCAGGATCATAAGATTTACATTTTTGCTCAGT-------TGTTT------TGGTGACC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74345460 128 + 122973662 TCTAGTGGTTATCTCTGATACTCATGGTCAAAACAGTTCTATTTGAAAG---AGATGTTTAATCCCCAAAGCTCTAAACGGTAAGACCAGGATCATAAGATTTACATTTTTGCTCAGG-------TGTTT------TGGTGACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29501673 128 + 172585720 TCTAGTGGTTATCTCTGATACCCATGGTCAAAACAGTTGTATTTGAAAG---AGCTGTTTAATCCCCAAAGCTCTAAATAATAAGACCAGGATCATAAGATTTATATTTTTGCTCAGT-------TGTTT------TGGTGACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29162788 128 - 170955103 TCTAGTGGTTATCTCTGATACCCATGGTCAAAACAGTTGTATTTGAAAG---AGCTGTTTAATCCCCAAAGCTCTAAATAATAAGACCAGGATCATAAGATTTATATTTTTGCTCAGT-------TGTTT------TGGTGACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2155203 128 -   2996164 TCTAGTGGTTATCTCTGATACCCATGGTCAAAACAGTTGTATTTGAAAG---AGCTGTTTAATCCCCAAAGCTCTAAATAATAAGACCAGGATCATAAGATTTATATTTTTGCTCAGT-------TGTTT------TGGTGACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2035886 128 -   2157725 TCTAGTGGTTATGTCTGATACCCATGGTCAAAACAGTTGTATTTGAAAG---AGCTGTTTAATCCCCAACGCTCTAAATAATAAGACCAGGATCATAAGATTTATATTTTTGCTCAGT-------TGTTT------TGGTGACC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28466260 128 -  71996105 TCTAGTGGTTATCTCTGATACCCATGGTCAAAACAGTTGTATTTGAAAG---AGCTGTTTAATCCCCAAAACTCTAAATAATAAGACCAGGATCATAAGATTTATATTTTTGCTCAGT-------TGTTT------TGGTGACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2173756 128 +   2316924 TCTAGTGGTTATGTCTGATACCCATGGTCAAAACAGTTGTATTTGAAAG---AGCTGTTTAATCCCCAAAGCTCTAAATAATAAGACCAGGATCATAAGATTTATATTTTTGCTCAGT-------TGTTT------TGGTGACC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2038124 128 -   3067355 TCTAATGGTTATCTCTGATATGTATGGTCAAAACAGTTGTATTTGAAAG---AGCTGTTTAATCCCCAAAGCTCTAAACAATAAGACCAGGATAGTAAGATTTATATTTTTGCTCAGT-------TGTTT------TGGTGACC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171557608 114 - 171630274 TCTAG----------TGATACCTGTGGTCGAAACA---CAGATCGAAAG---AGAGATTTAATCCCCAAAGCCCTAAGCAGTAAATCCAGGATCAT-AGATTGATATTTTTGCTCAGT-------TGTCT------TGGTGACC
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1665926 126 -   2232465 TCTATTAGTTATCTCTGACACCCAAGTTCAAAACAGCTGTGTCTGAAAG---AGATG--TACTCCCCAAAGCCCTAAACAGTAATTTCAGGATCATAAGATTTATATTTTTTCTCAGT-------TGTCT------TGGCGACC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            248167 144 -    859332 TCTAATATTTATCTCTGATACCCAAGGTTGATACAGTTGTCTGTGATAGATAAGACACTCCATCTCCAAAACTCTAAACAGTAAGGTAAGGACCataaaatttatatttttatttGGTGCTAGCATGTCTTCATGATGATGATC
i dasNov3.JH570037         I 725 C 0
e canFam3.chr35             26123994 2185 +  26524999 I

a score=1372240.000000
s hg38.chr6_GL000254v2_alt    314496 212 +   4827813 ATGAGGGATGATTCAAATACTTCATTGTCTA--CGACA--AT------TAGTTT-TGTTGTTGTCTCAGAGGTCACTATTTACA-CATTAAATTCTAGAGTAAGTATATACTATGAAAA---------------------TTTTTGTG-------AGTTGGCTTATAATC--------------AT-AGG-TTTTAACAGCTTCCTTAAATTAAAATTACATATCAGTAATAATTGGTTTTAATAAAATACATAAGCACGAATTGGCT
s panTro5.chr6              29289544 212 + 175400573 ATGAGGGATGATTCAAATACTTCATTGTCTA--TGACA--AT------TAGTTG-TTTTGTTGTCTCAGAGGTCACTATTTACA-CATTAAATTCTAGAGTAAGTATATACTATGAAAA---------------------TTTTTGTG-------AGTTGGCTTATAATC--------------AT-AGG-TTTTAACAGCTTCCTTAAATTAAAATTACATATCAGTAATAATTGGTTTTAATAAAATACATAAGCATGAATTGGCT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5332757 212 +   6154872 ATGAGGGATGATTCAAATACTTCAGTGTCTA--TGACA--AT------TAGTTT-TGTTGTTGTCTCAGAGGTCACTATTTACA-CATTAAATTCTAGAGTAGGTATATACTATGAAAA---------------------TTTTTGTG-------AGTTGGCTTATAATC--------------AT-AGG-TTTTAACAGCTTCCTTAAATTAAAATTACATATCAGTAATAATTGGTTTTAATAAAATACATAAGCACGAATTGGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74345588 212 + 122973662 ATGAGGGATGATTCAAATACTTCAGTGTCTA--TGACA--AT------TAGTTT-TGTTGTTGTCTCAGAGGTCATGATTTACC-CATTAAATTCTAGAGTAAGTATATAGTATGAAAA---------------------TTTTTGTG-------AGTTGGCTTATAATC--------------AT-AGG-TTTTAATAGCTTCCTTAAATTAAAATTACGTATCAGTAATAATTGGTTTTAATAAAATACATAAGCACGAATAGGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29501801 212 + 172585720 ATGAGGGGTGATTCAAATACTTCAGTGCCTA--TGACA--AT------TCGTTT-TGTTGTTGTCTCAGAGGTCACTATTTATG-CATTAAATTCTGGAGTAAGTATATACTATGAAAA---------------------TTTTTGTG-------AGTTGGCTTATAATC--------------AT-AGG-TTTTAACAGCTTCCTTAAATTAAAATTACATATTAGCAATAATTGGTTTTAATAAAATACATAAGCACGAATTGACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29162916 212 - 170955103 ATGAGGGGTGATTCAAATACTTCAGTGCCTA--TGACA--AT------TCGTTT-TGTTGTTGTCTCAGAGGTCACTATTTACG-CATTAAATTCTGGAGTAAGTATATACTATGAAAA---------------------TTTTTGTG-------AGTTGGCTTATAATC--------------AT-AGG-TTTTAACAGCTTCCTTAAATTAAAATTACATATTAGCAATAATTGGTTTTAATAAAATACATAAGCACGAATTGACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2155331 212 -   2996164 ATGAGGGGTGATTCAAATACTTCAGTGTCTA--TGACA--AT------TCGTTT-TGTTGTTGTCTCAGAGGTCACTATTTACA-CATTAAATTCTGGAGTAAGTATATACTATGAAAA---------------------TTTTTGTG-------AGTTGGCTTATAATC--------------AT-AGG-TTTTAACAGCTTCCTTAAATTAAAATTACATATTAGCAATAATTGGTTTTAATAAAATACATAAGCACGAATTGACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2036014 218 -   2157725 ATGAGGGGTGATTCAAATACTTCAGTGTCTACGTGACAGGGT------TCGTTTGTGTTGTTGTCTCAGAGGTCACTATTTACACCATTAAATTCTGGAGTAAGTATATACTATGAAAA---------------------TTTTTGTG-------AGTTGGCTTATAATC--------------AT-AAGTTTTTAACAGCTTCCTTAAATTAAAATTACATA-TAGCAATAATTGGTTTTAATAAAATACATAAGCATGAATTGACT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28466388 212 -  71996105 ATGAGGGGTGATTCAAATACTTCAGTGTCTA--TGACA--AT------TCGTTT-TGTTGTTGTCTCAGAGGTCACTATTTACA-CATTAAATTCTGGAGTAAGTATATACTATGAAAA---------------------TTTTTGTG-------AGTTGGCTTATAATC--------------AT-AGG-TTTTAACAGCTTCCTTAAATTAAAATTACATATTAGCAATAATTGGTTTTAATAAAATACATAAGCATGAATTGACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2173884 212 +   2316924 ATGAGGGGTGATTCAAATACTTCAGTGTCTA--TGACA--AT------TCGTTT-TGTTGTTGTCTCAGAGGTCACTATTTACA-CATTAAATTCTGGAGTAAGTATATACTATGAAAG---------------------TTTTTGTG-------AGTTGGCTTATAATC--------------AT-AGG-TTTTAACAGCTTCCTTAAATTAAAATTACATATTAGCAATAATTGGTTTTAATAAAATTCATAAGCACGAATTGACT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2038252 212 -   3067355 ATGAGGGATGATTCAAATACTTCAGTGTCTA--TGACA--AT------TCGTTT-TGTTGTTGTTTCAGAGGTCACTATTTACA-CATTAAATTCTGGAGTAAGTGTACACTATGAAAA---------------------TTTTTGTG-------AGTTGGCTTATAATC--------------AT-AGG-TTTTAACAGCTTCCTTAAATTAAAATTACATATCAGCAATAATTGGTTTTAATAAAATACATAAGCACGAATTGACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171557722 221 - 171630274 TTGAGAGGAGATTCAAATACTTCAGTGTCTG--TGACA--AT------TAGTTG-TGTTGTTTTCTCAGAGGTCACTATTCACA-CATTAAATTCTGGAGCAAGTATATACTGTGAAGA---------------------TTTTTGTG-------AGTTGGCTTATAATCTAAAACTTATGATTAT-AAG-TTTTAACAGCTTCC-----TTAAAATTACATATCAGCAATATTTAGTTTTGATAAAATAGTTAACCACGAATTGATT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1666052 216 -   2232465 ATGAAGAGTGATTCAAATACTTAAGTGTCTA--TGACA--ATGACAACTAGTTT----TGTTGTATCAGGGGTCACTATTCAAA-TGCTAGATCCTGGAACAACTACATACTTTGAAGA-------------------TTTTTTTATG-------AATTGGCTTATAACC--------------AT-AAG-TTATAACATCTTCCTTGAATTAAAAGTAAATATCACCAATAATTC-CCTTAAGAAAACACAGAAGCACAAATTGACT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            248311 236 -    859332 ACCATTGGTGATTCAAATACTTCAGTGCCCA--AGACA--GT----------TT-CTCTGCAGTCTTAGAGGTCACTATTTAAA-CCTGAGATCCTGGAGCAAAGATTTGTTTTTTGATCAGCTGTTTTACTTTAATTTTTTTTTGTGTTAGAGAAATTGTGTATTGAGC--------------ATGATG-TTTTAAGAGCTTCCTTGAATTAAAGTTATACACCACCAATAATTA-TTTTGATAAAATACATAAGCCCACATTGACT
i dasNov3.JH570037         C 0 I 7671
e canFam3.chr35             26123994 2185 +  26524999 I
e panPan2.chr6              29535728   0 + 173848474 C

a score=26466.000000
s hg38.chr6_GL000254v2_alt    314708 4 +   4827813 GCCT
s panTro5.chr6              29289756 4 + 175400573 GCCT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5332969 4 +   6154872 GCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74345800 4 + 122973662 GCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29502013 4 + 172585720 GCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29163128 4 - 170955103 GCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2155543 4 -   2996164 GCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2036232 4 -   2157725 GCCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28466600 4 -  71996105 GCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2174096 4 +   2316924 GCCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2038464 4 -   3067355 TCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171557943 4 - 171630274 GCCT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1666268 4 -   2232465 GCCC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            248547 7671 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e panPan2.chr6              29535728 0 + 173848474 C

a score=490806.000000
s hg38.chr6_GL000254v2_alt    314712 73 +   4827813 CATGATACATGTTCAAATGTGGATGA--------C-----ATTACT--GATCAAT---AAAAT--AA---TTTTAACT-ATCTGCTTCTGTACGATA
s panTro5.chr6              29289760 73 + 175400573 CATGATACATGTTCAAATGTGGATGA--------C-----ATTACT--GATCAAT---AAAAT--AA---TTTTAACT-ATCTGCTTCTGTACGATA
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5332973 73 +   6154872 CATGATACATGTTCAAATGTGGATGA--------C-----ATTACT--GATCAAT---AAAAT--AA---TTTTAACT-ATCTGCTTCTGTACGATA
i gorGor5.CYUI01015250v1   C 0 I 3
s nomLeu3.chr1a             74345804 75 + 122973662 CATGATACATGTTCAAATGTGGATGA--------C-----ATTATC--AATCAAT---AAAATAAAA---TTTTAACT-ATCTGCTTCTGTACTATA
i nomLeu3.chr1a            C 0 I 3
s rheMac8.chr4              29502017 73 + 172585720 CCTGATACATGTTCAAATGTAGATGA--------C-----ATTACT--GATCAAT---AAAAT--AA---TTTTAACT-ATCTGCTTCTGTATGATA
i rheMac8.chr4             C 0 I 3
s macFas5.chr4              29163132 73 - 170955103 CCTGATACATGTTCAAATGTAGATGA--------C-----ATTACT--GATCAAT---AAAAT--AA---TTTTAACT-ATCTGCTTCTGTATGATA
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1     2155547 73 -   2996164 CCTGATACATGTTCAAATGTAGATGA--------C-----ATTACT--GATCAAT---AAAAT--AA---TTTTAACT-ATCTGCTTCTGTATGATA
i macNem1.NW_012011356v1   C 0 I 3
s cerAty1.NW_012001495v1     2036236 82 -   2157725 CCTGATACATGTTCAAATGTAGATGA--------C-----ATTACGGAGATCAATGTAAAGAT--AAGGTTTTGAACTGATCTGCTTCTGTATGATA
i cerAty1.NW_012001495v1   C 0 I 3
s chlSab2.chr17             28466604 73 -  71996105 CCTGATACACGTTCAAATGTAGATGA--------C-----ATTACT--GATCAAT---AAAAT--AA---TTTTAACT-ATCTGCTTCTGTATGATA
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012104165v1     2174100 73 +   2316924 CCTGATACATGTTCAAATGTAGATGA--------C-----ATTACT--GATCAAT---AAAAT--AA---TTTTAACT-ATCTGCTTCTGTATGATA
i manLeu1.NW_012104165v1   C 0 I 3
s colAng1.NW_012115566v1     2038468 73 -   3067355 CCTGATACATGTTCAAATGTGGATGA--------C-----ATTACT--GATCAAT---AAAAT--AA---TTTTAACT-ATCTGCTTCTGTATGATA
i colAng1.NW_012115566v1   C 0 I 3
s calJac3.chr4             171557947 73 - 171630274 CGTGATACATGTTCAAATGTGGATAA--------C-----ATTATT--GATCAAT---AAAAT--AA---TTGTAACT-ATCTGCTTCTGTGTGATA
i calJac3.chr4             C 0 I 3
s otoGar3.GL873742           1666272 78 -   2232465 CATGATACATGTTCAAATGTGGATGA--------CTTGTTACTACT--GATCAAT---AAAAT--AA---TTTTATCT-ATCTGCTTCTATATAATA
i otoGar3.GL873742         C 0 I 3
s dasNov3.JH570037            256218 79 -    859332 CATTGTACATGTTTTAATGTGGATGAATTCTTCTC-----ATCACT--GAGCAAT---AAA----AG---TTATGATT-TTCTGCTTCTGTATGATA
i dasNov3.JH570037         I 7671 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e panPan2.chr6              29535728  0 + 173848474 C

a score=1900206.000000
s hg38.chr6_GL000254v2_alt    314785 251 +   4827813 ---ATCAATATATTTTACACTTGAGATatagtatagtgtaatggttagatggatagattgtggagccagactttctgggct-gaaatcctggtggctacagttaccagatgtgtgaacttgggaaaattacttaaccttcattgcctccgat--ttcttatctataataggggatatt-ataatacataatttaaagggcgaatgtaaggattcaataagtttaacatatgt-a-aatactacagtactggttggcacac---
s panTro5.chr6              29289833 251 + 175400573 ---ATCAATATATTTTACACTTGAGATatagtatagtgtaatggttagatggatagattgtggagccagactttctgggct-gaaatcctggtggctacagttatcagatgtgtgaacttgggaaaattacttaaccttcattgcctccgat--ttcttatctataataggggatagt-ataatacataatttaaagggcgaatgtaaggattcaataagtttaacatatgt-a-aatactacagtactggttggcacac---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29535728 251 + 173848474 ---ATCAATATATTTTACACTTGAGATatagtatagtgtaatggttagatggatagattgtggagccagaccttctgggct-gaaatcctggtggctacagttatcagatgtgtgaacttgggaaaattacttaaccttcattgcctccgat--ttcttatctataataggggatagt-ataatacataatttaaagggcgaatgtaaggattcaataagtttaacatacgt-a-aatactacagtactggttggcacac---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5333049 251 +   6154872 ---ATCAATATATTTTACACTTGAGATatagtatagtgtaatggttagatgcatagattgtggagccagactttctgggct-gaaatcctggtggctacagttatcagatgtgtgaacttgggaaaattacttaaccttcattgcctccgat--ttcttatctataataggggatagt-ataatacataatttaaagggcaaatgtaaggattcaataagtttaacatatgt-a-aatactacagtactggttggcacac---
i gorGor5.CYUI01015250v1   I 3 C 0
s nomLeu3.chr1a             74345882 251 + 122973662 ---ATCAATATATTTTACACTTGAGATatagtatagtgtaatggttagatggatagattgtggagccagactttctgggct-gaaatcctggtgggtatagttatcagatgtgtgaacttgggaaaattacttaaccttcattgcctctgat--ttcttatctataataggggatagt-ataatacataatttaaagggcgaatataaggattcaataagtttaacgtatgt-a-aatactacaatactggttggcacac---
i nomLeu3.chr1a            I 3 I 4
s rheMac8.chr4              29502093 251 + 172585720 ---GTCAACATATCTTACACTTGAGATatagtatagtgtaatggttagatggatagactgtggggccagactttctgggct-gaaatcctggtggctagagttatcagatgtgtgaactcgggaaaattacttaaccttcattgcctctgat--ttcttatctataataggggatact-ataatacataatttaaagggcaaatataaggattcaacaagtttaatatgtgt-a-aatactacaatactggttggcacac---
i rheMac8.chr4             I 3 I 4
s macFas5.chr4              29163208 251 - 170955103 ---GTCAACATATCTTACACTTGAGATatagtatagtgtaatggttagatggatagactgtggggccagactttctgggct-gaaatcctggtggctagagttatcagatgtgtgaactcgggaaaattacttaaccttcattgcctctgat--ttcttatctataataggggatact-ataatacataatttaaagggcaaatataaggattcaacaagtttaatatgtgt-a-aatactacaatactggttggcacac---
i macFas5.chr4             I 3 I 4
s macNem1.NW_012011356v1     2155623 251 -   2996164 ---GTCAACATATCTTACACTTGAGATatagtatagtgtaatggttagatggatagactgtggggccagactttctgggct-gaaattctggtggctagagttatcagatgtgtgaactcgggaaaattacttaaccttcgttgcctctgat--ttcttatctataataggggatact-ataatacataatttaaagggcaaatataaggattcaacaagtttaatatgtgt-a-aatactacaatactggttggcacac---
i macNem1.NW_012011356v1   I 3 I 4
s cerAty1.NW_012001495v1     2036321 251 -   2157725 ---GTCAACATATCTTACACTTGAGATatagtatagtgtaatggttagatggatagattgtggtgccagactttctgggct-gaaatcctggtggctagagttatcagatgtgtgaactcaggaaaattacttaaccttcgttgcctctgat--ttcttatctataataggggatact-ataatacataatttaaagggcaagtataaggattcaacaagtttaatatgtgt-a-aatactacaatactggttggcacac---
i cerAty1.NW_012001495v1   I 3 I 4
s chlSab2.chr17             28466680 241 -  71996105 ---GTCAACATATCTTACACTTGAGATatagtatagtgtaatggttagatggatagattgtggtgccagactttctgggct-gaaatcctggtggctagagttatcagatgtgtgaactcgggaaaattacttaaccttcgttgcctccgat--ttcttatctataataggg----------atac-taatttaaagggcaaatataaggattcaacaagtttaatatatgt-a-aatactacaatactggttggcacac---
i chlSab2.chr17            I 3 I 4
s manLeu1.NW_012104165v1     2174176 251 +   2316924 ---GTTAACATATCTTACACTTGAGATatagtatagtgtaatggttagatggatagattgtggtgccagactttctgggct-gaaatcctggtggctagagttatcagatgtgtgaactcaggaaaattacttaaccttcgttgcctctgat--ttcttatctataataggggatact-ataatacataatttaaagggcaagtataaggattcaacaagtttaatatgtgt-a-aatactacaatactggttggcacac---
i manLeu1.NW_012104165v1   I 3 I 4
s colAng1.NW_012115566v1     2038544 251 -   3067355 ---GTCAACATATCTTACACTTGAGATatagtatagtgtaatggttagatggatagattgtggtgccagactttctgggct-gaaatcctggtggctagagttatcagatgagtgaacttgggaaaattacttaatcttcgctgcctctgat--ttcttatctataatagaggataat-ataatacataatttaaagggcaaatataaggattcaacaagtttaatatatgt-a-aatactacaatactggttagcacac---
i colAng1.NW_012115566v1   I 3 I 1557
s calJac3.chr4             171558023 245 - 171630274 ---ATTAATATGTTTTACATTTGAGgtatagtatagtgtaacagttagatggataggttgtggagccagactttctgggcc-gaaattttgttggctatatttatcagatgtgtgaacttgggaaaattacttaaccttcgttgcctccgat--ttcttatctttaataggggattgt-ataatgcataatttaaagggctagtataaggactcaataagtttaatatatgt-a-aatactaca------gttggcacat---
i calJac3.chr4             I 3 I 4
s otoGar3.GL873742           1666353 233 -   2232465 ---ATCAATATATTCTACATTTGTGATGTAATATACTGTATTAATTCTATGGGTAgattgtggagtcagactttctgggct-gaaatcctggtagttacagttatcatgtatgtgaactttggaaatctactaaatc----------------------attcattgtggcagatagtaataatatataccttaaaggattagtgtaaggattaagtaagtttaatatatatga-aatattacaatactgattggcacac---
i otoGar3.GL873742         I 3 I 4
s dasNov3.JH570037            256297 257 -    859332 ATAATCATTGTGTTCTACATTTGAGAGatagtatagtatgatcactagatggatatattctggagccagatttcctgtgctcaaaaccctcaaatctgc--ttaccagctgtgtgaacttaggaaagttactcatcttctggtgtctcagattattattttatataatagcagatagtaatagtacctacttt-atggattaaaatgaggattaaatgagtttaatacatat-aTAATATTGTG--ACTGTGTGTTATGGAAA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I

a score=531598.000000
s hg38.chr6_GL000254v2_alt    315036 67 +   4827813 agcatccaaataagtattaactattaCAATTTCAATCAGTTCAGGGTGTCTGTGTGCTGCAGAA----------ATA----
s panTro5.chr6              29290084 67 + 175400573 agcatccaaataagtattaactattaCAATTTCAATCAGTTCAGGGTGTCTGTGTGCTGCAGAA----------ATA----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29535979 67 + 173848474 agcatccaaataagtattaactattaCAATTTCAATCAGTTCAGGGTGTCTGTGTGCTGCAGAA----------ATA----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5333300 67 +   6154872 agcatccaaataagtattaactattaCAATTTCAATCAGTTCAGGGTGTCTGTGTGCTGCAGAA----------ATA----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74346137 67 + 122973662 agcatccagataggtattaactattaCAATTTCAATCAGTTCAGGGTGTCTGTGTGCTGCAAAA----------ATA----
i nomLeu3.chr1a            I 4 C 0
s rheMac8.chr4              29502348 67 + 172585720 agcatccaaataagtattaactattaCAATTTCAATCAGTTCAGGATGTTTGTGTGCTGCAAAA----------ATA----
i rheMac8.chr4             I 4 C 0
s macFas5.chr4              29163463 67 - 170955103 agcatccaaataagtattaactattaCAATTTCAATCAGTTCAGGGTGTTTGTGTGCTGCAAAA----------ATA----
i macFas5.chr4             I 4 C 0
s macNem1.NW_012011356v1     2155878 67 -   2996164 agcatccaaataagtattaactattaCAATTTCAATCAGTTCAGGGTGTTTGTGTGCTGCAAAA----------ACA----
i macNem1.NW_012011356v1   I 4 C 0
s cerAty1.NW_012001495v1     2036576 67 -   2157725 agcatccaaataagtattaactattaCAATTTCAATCAGTTCAGGGTGTTTGTGTGCTGCAAAA----------ATA----
i cerAty1.NW_012001495v1   I 4 C 0
s chlSab2.chr17             28466925 67 -  71996105 agcattcaaataagtattaactattaCAATTTCATTCAGTTCAGGGTGTCTGTGTGCTGCAGAA----------ATA----
i chlSab2.chr17            I 4 C 0
s manLeu1.NW_012104165v1     2174431 67 +   2316924 agcatccaaataagtattaactattaCAATTTCAATCAGTTCAGGGTGTTTGTGTGCTGCAAAA----------ATA----
i manLeu1.NW_012104165v1   I 4 C 0
s colAng1.NW_012115566v1     2040352 67 -   3067355 agcatccaaataagtattaactattaCAATTTCAATCAGTTCAGGGTGTCTGTGTGCTGCAAAA----------ATA----
i colAng1.NW_012115566v1   I 1557 C 0
s calJac3.chr4             171558272 67 - 171630274 agcatccaagtaagtattaactattaCAGTTTCAGTCAGTTCAGGATATCCATTTGCTGCAAAA----------ATA----
i calJac3.chr4             I 4 C 0
s otoGar3.GL873742           1666590 67 -   2232465 aatatccaaatcagtatgagctattaCAATTTAAGTCAATTTGGGATATCTTTATGCTGTAAAA----------ATG----
i otoGar3.GL873742         I 4 I 297
s dasNov3.JH570037            256554 81 -    859332 AGCATTGAAATATGTATTAGTTATCAATTTTTCAATCAATGGAATGTGGCTGTATGATGCAAAATTCTTCATTTATATCAA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I

a score=567790.000000
s hg38.chr6_GL000254v2_alt    315103 79 +   4827813 TTTGGGGAAAGTTTATGCTGACATTTGATAAAACATCTGG-AAAATACT---CTCCT---TATAAGCACTTCCTTTAGGATTTtat
s panTro5.chr6              29290151 79 + 175400573 TTTGGGGAAAGTTTATGCTGATATTTGATAAAACATCTGG-AAAATACT---CTCCT---TATAAGCACTTCCTTTAGGATTTtat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29536046 79 + 173848474 TTTGGGGAAAGTTTATGCTGATATTTGATAAAACATCTGG-AAAATACT---CTCCT---TATAAGCACTTCCTTTAGGATTTtat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5333367 79 +   6154872 TTTGGGGAAAGTTTATGCTGATATTTGATAAAACATCTGG-AAAATACT---CTCCT---TATAAGCACCTCCTTTAGGATTTtat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74346204 79 + 122973662 TTTGGGGAAAGTTTATGCTGATATTTGATAAAACATCTGG-AAAATACT---CTCCT---TATAAGCACTTCCTTTAGGATTTtat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29502415 78 + 172585720 TTTGGGGAAAATTTATGCTGATATTTCATAAAACATCTGGAAAAATACT---CTCCT---TATAAGCACTTCCTTTAGGA--TGat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29163530 78 - 170955103 TTTGGGGAAAATTTATGCTGATATTTCATAAAACATCTGGAAAAATACT---CTCCT---TATAAGCACTTCCTTTAGGA--TGat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2155945 78 -   2996164 TTTGGGGAAAATTTATGCTGATATTTCATAAAACATCTGGAAAAATACT---CTCCT---TATAAGCACTTCCTTTAGGA--TGat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2036643 78 -   2157725 TTTGGGGAAAATTTATGCTGATATTTCATAAAACATCTGGAAAAATACT---CTCCT---TATAAGCACTTCCTTTAGGA--Ttat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28466992 77 -  71996105 TTTGGGGAAAATTTATGCTGATATTTGATAAAACATCTGG-AAAATACT---CTCCT---TATAAGCACTTCCTTTAGGA--Ttat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2174498 78 +   2316924 TTTGGGGAAAATTTATGCTGATATTTCATAAAACATCTGGAAAAATACT---CTCCT---TATAAGCACTTCCTTTAGGA--Ttat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2040419 77 -   3067355 TTTGGGGAAAATTTATGCTGATATTTGATAAAACATCTGG-AAAATACT---CTCCT---TATAAGCACTTCCTTTAGGA--Ttat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171558339 82 - 171630274 TTTGGGGAAAGTTTATCCTGATAGTTGATAAAATATCTAG-AAAATACT---TTCCTCTGTATAAGCACCTGCTTTAGGATtatat
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1666954 80 -   2232465 TTTAGGTAATGCGTGTGCTGATATTTTACAAAACATCTGG-GAAACACTTTCCTCCT---TACAAGTACTTCCTTTAGGA--TTAT
i otoGar3.GL873742         I 297 I 53839
s dasNov3.JH570037            256635 74 -    859332 TTTGCAGAGAGCTCACATTGGTATCTGACAAAATATCTAGAAACATTTT---CTCCT---TTCAAACATTTC--TTATGA--Tt--
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I

a score=496644.000000
s hg38.chr6_GL000254v2_alt    315182 88 +   4827813 atataatacacacatatatgaaatatatat--actatatacatagtatatacatatgtatgtgtatgtattctttataaatgctataata----
s panTro5.chr6              29290230 88 + 175400573 atataatacacacatatatgaaatatatat--gctatatacatagtatatacatatgtatgtgcatatattctttataaatgctataata----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29536125 88 + 173848474 atataatacacacatatatgaaatatatat--gctatatacatagtatatacatatgtatgtgcatatattctttataaatgctataata----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5333446 88 +   6154872 atataatacacacatatatgaaatatatat--actatatacatagtatatacatatgtatgtgtatatattctttataaatgctataata----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74346283 88 + 122973662 atataatacacacatatatgaaatatatat--actatatacatagtatatacatatgtatgtgtatatattctttataAACGCTATAATA----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29502493 83 + 172585720 atataatacatatat-----aaatatatat--actatatacacagtatatatatacatatgtgtatatattctttataaatgctataata----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29163608 83 - 170955103 atataatacatatat-----aaatatatat--actatatacacagtatatatatacatatgtgtatatattctttataaatgctataata----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2156023 83 -   2996164 atataatacatatat-----aaatatatat--actatatacacagtatatatatacatatgtgtatatattctttataaatgctataata----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2036721 83 -   2157725 atataatacatatat-----aaatatatat--actatatacacagtatatacatacgtatgtgtatatattctttataaatgctataata----
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28467069 81 -  71996105 atataatacatatata----aaatatatat--actatatacatagtgtatacatacgtatgtgtatatattctttataaatGCTATA-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2174576 83 +   2316924 atataatacatatat-----aaatatatat--actatatacacagtatatacatacatttgtgtatatattctttataaatgctataata----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2040496 84 -   3067355 atataatacatatata----aaatatatat--actatatacatagtatatacatatgtatgtatatatattctttataaatCCTGTGATA----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171558421 76 - 171630274 atataatacacacatatataaaatatatataaactatatat-cagtatatggatat-------------CACTTTATAAATGATACAATA----
i calJac3.chr4             C 0 C 0
s dasNov3.JH570037            256709 81 -    859332 -----acatatatat-----gtgtatataa--actatatgta-ggtataggtatatatgtatgtatatatTCTCCAAAAATTTTATCATTAATA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1667034 53839 -   2232465 I

a score=419803.000000
s hg38.chr6_GL000254v2_alt    315270 73 +   4827813 ATGATGATAAAAAGAAACATAACAT---CTAATGGTACATTTTTGTCTATCAAGATTCTAAACATCTGAATACTTG
s panTro5.chr6              29290318 76 + 175400573 ATGATGATAAAAAGAAACATAACATCTACTAATGGTACATTTTTGTCTATCAAGATTCTAAACATCTGAATACTTG
i panTro5.chr6             C 0 I 1
s panPan2.chr6              29536213 76 + 173848474 ATGATGATAAAAAGAAACATAACATCTACTAATGGTACATTTTTGTCTATCAAGATTCTAAACATCTGAATACTTG
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01015250v1     5333534 76 +   6154872 ATGATGATAAAAAGAAACATAACATCTGCTAATGGTACATTTTTGTCTATCAAGATTCTAAACATCTGAATACTTG
i gorGor5.CYUI01015250v1   C 0 I 1
s nomLeu3.chr1a             74346371 73 + 122973662 ATGATGATAAAAAGAAACATAACAT---CTAATGGTACATTTTTGTCTATCAAGATTCTAAACATCTGAATACTTG
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4              29502576 72 + 172585720 ATGATGAT---AAGAAACATAACATCTACTAATGGTACATTTTTGTCTAACAAGATTCTAAATATCTGAAT-CTTG
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              29163691 72 - 170955103 ATGATGAT---AAGAAACATAACATCTACTAATGGTACATTTTTGTCTAACAAGATTCTAAATATCTGAAT-CTTG
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     2156106 72 -   2996164 ATGATGAT---AAGAAACATAACATCTACTAATGGTACATTTTTGTCTAACAAGATTCTAAATATCTGAAT-CTTG
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012001495v1     2036804 73 -   2157725 ATGATGAT---AAGAAACATAACATCTACTAATGGTACATTTTTGTCTATCAAAATTCTAAATATCTGAATACTTG
i cerAty1.NW_012001495v1   C 0 I 1
s chlSab2.chr17             28467150 69 -  71996105 ---ATGAT---AAGAAACATAACATCTACTAATGGTACATTTTTGTCTATC-AAGTTCTAAATATCTGAATACTTG
i chlSab2.chr17            C 0 I 19
s manLeu1.NW_012104165v1     2174659 73 +   2316924 ATGATGAT---AAGAAACATAACATCTACTAATGGTACATTTTTGTCTATCAAAATTCTAAATATCTGAATACTTG
i manLeu1.NW_012104165v1   C 0 I 1
s colAng1.NW_012115566v1     2040580 73 -   3067355 ATGATGAT---AAGAAACATAACACCTACTAATGGTACATTTTTGTCTATCAAGATTCTAAACATCTGAATACTTG
i colAng1.NW_012115566v1   C 0 I 1
s dasNov3.JH570037            256790 73 -    859332 ATGATGATAATAAGAAATAAGTCAT---TTAATGGCATGATTTTGCCTTTCAAAATTCTAAATATCTGCATACTTG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1667034 53839 -   2232465 I
e calJac3.chr4             171558497  0 - 171630274 C

a score=33386.000000
s hg38.chr6_GL000254v2_alt    315343 7 +   4827813 ATCTGTT
s panTro5.chr6              29290395 7 + 175400573 AACTGTT
i panTro5.chr6             I 1 C 0
s panPan2.chr6              29536290 7 + 173848474 AACTGTT
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01015250v1     5333611 7 +   6154872 AACTGTT
i gorGor5.CYUI01015250v1   I 1 C 0
s nomLeu3.chr1a             74346445 7 + 122973662 AATTGTT
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4              29502649 7 + 172585720 AACTGTT
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              29163764 7 - 170955103 AACTGTT
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     2156179 7 -   2996164 AACTGTT
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012001495v1     2036878 7 -   2157725 AACTGTT
i cerAty1.NW_012001495v1   I 1 C 0
s manLeu1.NW_012104165v1     2174733 7 +   2316924 AACTGTT
i manLeu1.NW_012104165v1   I 1 C 0
s colAng1.NW_012115566v1     2040654 7 -   3067355 AACTCTT
i colAng1.NW_012115566v1   I 1 C 0
s dasNov3.JH570037            256863 7 -    859332 AAATGCT
i dasNov3.JH570037         C 0 T 46851
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1667034 53839 -   2232465 I
e calJac3.chr4             171558497 0 - 171630274 C
e chlSab2.chr17             28467219 19 -  71996105 I

a score=28172.000000
s hg38.chr6_GL000254v2_alt    315350 16 +   4827813 CACTTTGACTGGAGA-T
s panTro5.chr6              29290402 16 + 175400573 CACTTTGACTGGAGA-T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29536297 16 + 173848474 CACTTTGACTGGAGA-T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5333618 16 +   6154872 CACTTTGACTGGAGA-T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74346452 16 + 122973662 CGCTTTGACTACAGA-T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29502656 13 + 172585720 CA--TGGACTAGAGA--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29163771 13 - 170955103 CA--TGGACTAGAGA--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2156186 13 -   2996164 CA--TGGACTAGAGA--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2036885 13 -   2157725 CA--TGGACTAGAGA--
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2174740 13 +   2316924 CA--TGGACTAGAGA--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2040661 14 -   3067355 CA--CGGACTAGAGAT-
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            210019 16 -    859332 TACTTTGACTAAAGG-T
i dasNov3.JH570037         T 46851 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1667034 53839 -   2232465 I
e calJac3.chr4             171558497  0 - 171630274 C
e chlSab2.chr17             28467219 19 -  71996105 I

a score=5248524.000000
s hg38.chr6_GL000254v2_alt    315366 865 +   4827813 CTCAGTTTC-ACTTATGTATTTTTCTCTTCCCCTTTAGTCAAATTTTCTACAGTTCTCCTTTTTCTTTTAAAAACCACTTTAAAGTTATAAT-----------------TGAATTTCACAATTTCAATTCAACCAT-AGCAAATATTCAATTTTCATTTGAAAAACAAAAATGTATATAAATTGTCATGCCCACCCAT-----------GTTTCTGGTTTAAATACATTCCTACACAGTGACTTTTCTAGTCCCTTGCTCCTTATTCTGTGATTAAAATCCATGGGTTTGTTACTCTGGAGAAATTATAGAGAAATCCTTTGGATTTTTGAA---------------TTAATTTTTAAAAAGGT-----TTTCATTTGTTATCAAA----AAATGGATATACCCAGC---TTGTAAAGCAGATGCCCTTGCCTTAAACTTTAATATAAGA-----CCTTTCCATACCCCTTTGAATAAATCAAGACATGTTTTCCTGTTTCCTTTTTATTTAACAA-TTTTTTCCCTTGCTTACTTTAGCCCTTAACTTATGGAAACCATTTAAAGTGAAGTTATTAGCAGTGCTTCCACAACTGGCCGCATATCAGAGTAACTGTATTGGCTGGCATATGTAGAAATTTTAGAAATACAGTGTCCTGAGATTCCTATGCCCTTGCCAAAGGCTCAATtcttttctgtttatactgtgtccctagatagaatcttagagttttaaggatttgaatcccatctacatattgatggctttcaagtgtctatttccagtcttctacattgagcatggaataggtagttccaactgcctaatttc----------atgc---acaaaattatgagtctaaacatagctaaaatagatctcttgattgcactgaatct----gctctcat--tccagtcttcctcattgtagtaaatgatat
s panTro5.chr6              29290418 865 + 175400573 CTCAGTTTC-ACTTATGTATTTTTCTCTTCCCCTTTAGTCAAATTTTCTACAGTTCTCCTTTTTCTTTTAAAAACCACTTTAAAGTTATAAT-----------------TGAATTTCACAATTTCAATTCAACCAT-AGCAAATATTCAATTTTCATTTGAAAAACAAAAATGTATATAAATTGTCATGCCCACCCAT-----------GTTTCTGGTTTAAATACATTCCTACACAGTGACTTTTCTAGTCCCTTGCTCCTTATTCTGTGATTAAAATCCATGGGTTTGTTACTCTGGAGAAATTATAGAGAAATCCTTTGGATTTTTGAA---------------TTAATTTTTAAAAAGGT-----TTTCATTTGTTATCAAA----AAATGGATATACCCAGC---TTGTAAAGCAGATGCCCTTGCCTTAAACTTTAATATAAGA-----CCTTTCCATACCCCTTTGAATAAATCAAGACATGTTTTCCTGTTTCCTTTTTATTTAACAA-TTTTTTCCCTTGCTTACTTTAGCCCTTAACTTATGGAAACCATTTAAAGTGAAGTTATTAGCAGTGCTTCCACAACTGGCCGCATATCAGAGTAACTGTATTGGCTGGCATATGTAGAAATTTTAGAAATACAGTGTCCTGAGATTCCTATGCCCTTGCCAAAGGCTCAATtcttttctgtttatactgtgtccctagatagaatcttagagttttaaggatttaaatcccatctacatattgatggctttcaagtgtctatttccagtcttctacattgagcatggaataggtagttccaactgcctaatttc----------atgc---acgaaattatgagtctaaacatagctaaaatagatctcttgattgcactgaatct----gctctcat--tccagtcttcctcattgtagtaaatgatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29536313 865 + 173848474 CTCAGTTTC-ACTTATGTATTTTTCTCTTCCCCTTTAGTCAAATTTTCTACAGTTCTCCTTTTTCTTTTAAAAACCACTTTAAAGTTATAAT-----------------TGAATTTCACAATTTCAATTCAACCAT-AGCAAATATTCAATTTTCATTTGAAAAACAAAAATGTATATAAATTGTCATGCCCACCCAT-----------GTTTCTGGTTTAAATACATTCCTACACAGTGATTTTTCCAGTCCCTTGCTCCTTATTCTGTGATTAAAATCCATGGGTTTGTTACTCTGGAGAAATTATAGAGAAATCCTTTGGATTTTTGAA---------------TTAATTTTTAAAAAGGT-----TTTCATTTGTTATCAAA----AAATGGATATACCCAGC---TTGTAAAGCAGATGCCCTTGCCTTAAACTTTAATATAAGA-----CCTTTCCATACCCCTTTGAATAAATCAAGACATGTTTTCCTGTTTCCTTTTTATTTAACAA-TTTTTTCCCTTGCTTACTTTAGCCCTTAACTTATGGAAACCATTTAAAGTGAAGTTATTAGCAGTGCTTCCACAACTGGCCGCATATCAGAGTAACTGTATTGGCTGGCATATGTAGAAATTTTAGAAATACAGTGTCCTGAGATTCCTATGCCCTTGCCAAAGGCTCAATtcttttctgtttatactgtgtccctagatagaatcttagagttttaaggatttaaatcccatctacatattgatggctttcaagtgtctatttccagtcttctacattaagcatggaataggtagttccaactgcctaatttc----------atgc---acaaaattatgagtctaaacatagctaaaatagatctcttgattgcactgaatct----gctctcat--tccagtcttcctcattgtagtaaatgatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5333634 865 +   6154872 CTCAGTTTC-ACTTATGTATTTTTCTCTTCCCCTTTAGTCAAATTTTCTACAGTTCTCCTTTTTCTTTTAAAAACCACTTTAAAGTTATAAT-----------------TGAATTTCACAATTTCAATTCAACCAT-AGCAAATATTCAATTTTCATTTGAAAAACAAAAATGTATATAAATTGTCATGCCCACCCGT-----------GTTTCTGGTTTAAATACATTCCTACACAGTGACTTTTCTAGTACCTTGCTCCTTATTCTGTGATTAAAATCCATGGGTTTATTACTCTGGAGAAATTATAGAGAAATCCTTTGGATTTTTGAA---------------TTAATTTTTAAATACGT-----TTTCATTTGTTATCAAA----AAATGGATATACCCAGC---TTGTAAAGCAGATGCCCTTGCCTTAAACTTTAATATAAGA-----CCTTTCCATACCCCTTTGAATAAATCAAGACATGTTTTCCTGTTTCCTTTTTATTTAACAA-TTTTTTCCCTTGCTTACTTTAGCCCTTAACTTATGGAAACCATTTAAAGTGAAGTTATTAGCAGTGCTTCCACAACTGGCCGCATATCAGAGTAACTGTATTGGCTGGCATATGTAGAAATTTTAGAAATACagtgtcctgagattcctctgcccttgccaaaggctcaattcttttctgtttatactgtgtccctagatagaatcttagagttttaaggatttaaatcccatctacatattgatggctttcaagtgtctatttccagtcttctacattgagcatggaataggtagttccaactggctaatttc----------atgc---acaaaattatgagtctaaacatagctaaaatagatctcttgattgcactgaatct----gctctcat--tccagtcttcctcattgtagtaaatgatat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74346468 865 + 122973662 CTCAGTTTC-ACTTATGTATTTTTCTCTTCCCCTTTAGTCAAATTTTCTACAGTTCTCCTTTTTCTTTTAAAAACCGCTTTAAAGTTATAAT-----------------TGAATTTCACAATTTCAATTCAACCAT-AGCAAATATTCAATTTTCATTTGAAAAACAAAAATGTATATAAATTCTCATGCCCACCCAT-----------GTTTGTGGTTTAAATACATTCCTGCACAGTGACTTTTCTAGTCCCTTGCTCCTTGTTCTGTGATTAAAATCCATGGGTTTGTTACTCAGGAGAAATTATAGAGAAATCCTTTGGATTTTTGAA---------------TTAATTTTTAAAAAGGT-----TTTCATTTGTTATCAAA----AAATGGATATACCCAGC---TTGTAAAGCAGATGCCCTTGCCTTAAACTTTAATATAAGA-----CCTTTCCATACCCCTTTGAATAAATCAAGACATGTTTTCCTGTTTCCTTTTTATTTAACAA-TTTTTTCCCTTGCTTACTTTTGCCCCTAACTTATGGAAGCCATTTAAAGTGAAGTTATTAGCAGTGCTTCCACAACTGGCCGAATATCAGAGTAACTGTATTGGCTGGCGTATGTAGAAATTTTAGAAATACagtgtcctaagattcctatgcccttgccaaaggctcaattcttttctgtttattctgtgtccctagataaaatcttagagttttaaggatttaaatcccatctacatattgatggctttcaagtgtctatttccagtcttctacattgagcatggaacaggtagttccaactgcctaatttc----------atgc---acaaaattatcagtctaaacacagctaaaatagaactcttgattgcactgaatct----gctctcat--tccagtcttcctcattgtagtaaatgatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29502669 867 + 172585720 CTCAGTTTC-ACTTGTGTATTTTTCTCTTCCCATTTAGTCAAGTTTTCTACAGTTCTCCTTTTTCTTTTAAAAACTACTGCAAAGTTATAAT-----------------TTAATTTCACAATTTCAATCCAACCATAAGCAAATATTCGATTTTCATTTGAAAAACAAAAATGTATATAAATTGTCATGCCCACCCAT-----------ATTTCTGGTTTAAATACATTCCTGCACAGTAACTTTTCTAGTCCCTTGCTCCTTATTCTGTGATTAAAATCCATGGGTTTGTTACTCTGGAGAAATTATAGAGGAATCCTTTGGATTTTTGAA---------------TTATTTTTTAAAAAGGT-----TTTCATTTGTTATCAAG----AAATAGATATACCCAGC---TTGTAAAGCAGATGCTGGTGTCTTAAACTTTAATATAAGA-----CCTTTCCATTCCCCTTTGAATAAATCAAGACATGTTTTCCTGTTTCCTTTTTATTTAACCATTTTTTTCCCTTGCTTACTTTAGCCCTTTACTTATGGAAGCCATTTAAAGTGAAGTTATTAGCAGTGCTTCCACAACTGGCTGCATATCAGAGTAACTGTATTGGCTGGCGTATGTAGAAATTTTAGAAATACACTGTCCTGAGATTCCTATGCTCTTGCCAAGGGCTCAATtcttttctgtttatactgtgtccctagataccatcttagagttttaaggctttgaatcccatctacatattgatggctttcaagtgtctatttctagtcttctacattgagcatcaaataggtagttccagctgcctaatttc----------atgc---acaaaattataagtctaaacatagctaaaatagaactcttgattgcactgagtct----gctctaat--tccagtcttcctcattgtagtaaatgatat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29163784 867 - 170955103 CTCAGTTTC-ACTTGTGTATTTTTCTCTTCCCATTTAGTCAAGTTTTCTACAGTTCTCCTTTTTCTTTTAAAAACTACTGCAAAGTTATAAT-----------------TTAATTTCACAATTTCAATCCAACCATAAGCAAATATTCGATTTTCATTTGAAAAACAAAAATGTATATAAATTGTCATGCCCACCCAT-----------ATTTCTGGTTTAAATACATTCCTGCACAGTAACTTTTCTAGTCCCTTGCTCCTTATTCTGTGATTAAAATCCATGGGTTTGTTACTCTGGAGAAATTATAGAGGAATCCTTTGGATTTTTGAA---------------TTATTTTTTAAAAAGGT-----TTTCATTTGTTATCAAG----AAATAGATATACCCAGC---TTGTAAAGCAGATGCTGGTGTCTTAAACTTTAATATAAGA-----CCTTTCCATTCCCCTTTGAATAAATCAAGACATGTTTTCCTGTTTCCTTTTTATTTAACCATTTTTTTCCCTTGCTTACTTTAGCCCTTTACTTATGGAAGCCATTTAAAGTGAAGTTATTAGCAGTGCTTCCACAACTGGCTGCATATCAGAGTAACTGTATTGGCTGGCGTATGTAGAAATTTTAGAAATACACTGTCCTGAGATTCCTATGCTCTTGCCAAGGGCTCAATtcttttctgtttatactgtgtccctagataccatcttagagttttaaggctttgaatcccatctacatattgatggctttcaagtgtctatttctagtcttctacattgagcatcaaataggtagttccagctgcctaatttc----------atgc---acaaaattataagtctaaacatagctaaaatagaactcttgattgcactgagtct----gctctaat--tccagtcttcctcattgtagtaaatgatat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2156199 867 -   2996164 CTCAGTTTC-ACTTGTGTATTTTTCTCTTCCCATTTAGTCAAGTTTTCTACAGTTCTCCTTTTTCTTTTAAAAACTACTGCAAAGTTATAAT-----------------TTAATTTCACAATTTCAATCCAACCATAAGCAAATATTCGATTTTCATTTGAAAAACAAAAATGTATATAAATTGTCATGCCCACCCAT-----------ATTTCTGGTTTAAATACATTCCTGCACAGTAACTTTTCTAGTCCCTTGCTCCTTATTCTGTGATTAAAATCCATGGGTTTGTTACTCTGGAGAAATTATAGAGGAATCCTTTGGATTTTTGAA---------------TTATTTTTTAAAAAGGT-----TTTCATTTGTTATCAAG----AAATAGATATACCCAGC---TTGTAAAGCAGATGCTGGTGTCTTAAACTTTAATATAAGA-----CCTTTCCATTCCCCTTTGAATAAATCAAGACATGTTTTCCTGTTTCCTTTTTATTTAACCATTTTTTTCCCTTGCTTACTTTAGCCCTTTACTTATGGAAGCCATTTAAAGTGAAGTTATTAGCAGTGCTTCCACAACTGGCTGCATATCAGAGTAACTGTATTGGCTGGCGTATGTAGAAATTTTAGAAATACACTGTCCTGAGATTCCTATGCTCTTGCCAAGGGCTCAATtcttttctgtttatactgtgtccctagataccatcttagagttttaaggctttgaatcccatctacatattgatggctttcaagtgtctatttctagtcttctacattgagcatcaaataggtagttccagctgcctaatttc----------atgc---acaaaattataagtctaaacatagctaaaatagaactcttgattgcactgagtct----gctctaat--tccagtcttcctcattgtagtaaatgatat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2036898 860 -   2157725 CTCAATTTC-ACTTGTGTGTTTTTCTCTTCCCATTTAGTGAAGTTTTCTACA---CTTCTTTTTCTTTTAAAAACTGCTGTAAAGTTATAAT-----------------TCAATTTCACAATTTCAATCCAACCATAAGCAAATATTCGATTTTCATTTGAAAAATAGAAATGTATATAAATTGTCATGCCCACCCAT-----------ATTTCTGGTTTAAATACATTCTTGCACAGTGACTTTTCTAGTCCCTTGCTCCTTATTCTGTGATTAAAATCCATGGGTTTGTTACTCTGGAGAAATTATAGCGGAATCCTTTGGATTTTTGAA---------------TTATTTTTTAAAAAGGT-----TTTCATTTGTTATCAAG----AAATGGATATCCCCAGC---TTGTAAAGCAGATGCTGGTGCCTTAAACTTTAATATAAGA-----CCTTTCCATTCCCCTTTGAATAAATCAAGACATGTTTTCCTGTTTCCTTTTTATTTAACCATTTTTTCCCCTTG----CTTTAGCCCTTTACTTATGGAAGTCATTTAAAGTGAAGTTATTAGCAGTGCTTCCACAACTGGCTGCGTATCAGAGTAACTGTATTGGCTGGCATATGTAGAAATTTTAGAAATACACTGTCCTGAGATTCCTATGCCCTTGCCAAGGGCTCAATtcttttctgtttatactgtgtccctagataccatcttagagttttaaggctttgaatcccatctacatattgatggctttcaagtgtctatttccagtcttctacattgagcatcaaataggtagttccagctgcctaatttc----------atgc---acaaaattataagtctaaacatagctaaaatagaactcttgattgcactgagtct----gctctaat--tccagtcttcctcattgtagtaaatgatat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28467238 866 -  71996105 CTCAATTTC-ACTAGTGTATTTTTCTCTTCCCATTTAGTCAAGTTTTCTACAGTTCTCCTTTTTCTTTGAAAAACTACTGCAAAGTTATAAT-----------------TTAATTTCACAATTTCAATCCAACCATAAGCAAATATTCGATTTTCATTTGAAAAACAAAAATGTATATAAATTGTCATGCCCACCCAT-----------ATTTCTGGTTTAAATACATTCCTACACAGTGA-TTTTCTAGTCCCTTGCCCATTATTCTGTGATTAAAATCCATGGGTTTGTTACTCTGGAGAAATTATAGAGGAATCCTTTGGATTTTTGAA---------------TTATTTTTTAAAAAGGT-----TTTCATTTGTTATCAAG----AAATGGATATACCCAGC---TTGTAAAGCAGATGCTGGTGCCTTAAACTTTAATATAAGA-----CCTTTCCATTCCCCTTTGAATAAATCAAGACATGTTTTCCTGTTTCCTTTTTATTTAACCACTTTTTTCCCTTGCTTACTTTAGCCCTTTACTTATGGAAGTCATTTAAAGTGAAGTTATTAGCAGTGCTTCCACAACTGGCTGCGTATCAGAGTAACTGTACTGGCTGGCGTATGTAGAAATTTTAGAAATACACTGTCCTGAGATTCCTATGCCCTTGCCAAGGGCTCAATttttttctgtttatactgtgtccctagataccatcttagagttttaaggctttgaatcccatctacatattgatggctttcaagtgtctatttccagtcttctacattgagcatcaaataggtagttccagctgcctaatttc----------atgc---acaaaattataagtctaaacatagctaaaataaaactcttgattgcactgagtct----gctctaat--tccagtcttcctcattgtagtaaatgatat
i chlSab2.chr17            I 19 C 0
s manLeu1.NW_012104165v1     2174753 865 +   2316924 CTCAATTTC-ACTTGTGTGTTTTTCTCTTCCCATTTAGTCAAGTTTTCTACAGTTCTCCTTTTTCTTTTAAAAACTACTGCAAAGTTATAAT-----------------TTAATTTCACAATTTCAATCCAACCATAAGCAAATATTCGATTTTCATTTGAAAAACAAAAATGTATATAAATTGTCATGCCCACCCAT-----------ATTTCTGGTTTAAATACTTTCCTACACAGTGA-TTTTCTAGTCCTTTGCTCCTTATTCTGTGATTAAAATCCATGGGTTTGTTACTCTGGAGAAATTATAGCGGAATCCTTTGGATTTTTGAA---------------TTATTTTTTAAAAAGGT-----TTTCATTTGTTATCAAG----AAATGGATATACCCAGC---TTGTAAAGCAGATGCTGGTGCCTTAAACTTTAATATAAGA-----CCTTTCCATTCCCCTTTGAATAAATCAAGACATGTTTTCCTGTTTCCTTTTTATTTAACCA-TTTTTTCCCTTGCTTACTTTAGCCCTTTACTTATGGAAGTCATTTAAAGTGAAGTTATTAGCAGTGCTTCCACAACTGGCTGCGTATCAGAGTAACTGTATTGGCTGGCGTATGTAGAAATTTTAGAAATACACTGTCCTGAGATTCCTATGCCCTTGCCAAGGGCTCAATtcttttctgtttatactgtgtccctagataccatcttagagttttaaggctttgaatcccatctacatattgatggctttcaagtgtctatttccagtcttctacattgagcatcaaataggtagttccagctgcctaatttc----------atgc---acaaaattataagtctaaacatagctaaaatagaactcttgattgcactgagtct----gctctaat--tccagtcttcctcattgtagtaaatgatat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2040675 866 -   3067355 -TCAGTTTC-ACTTGTGTATTTTTCTCTTCCTATTTAGTCAAGTTTTCTACAGTTCTCCTTTTTCTTTTAAAAACTGATGTAAAGTTATAAT-----------------TTAATTTCACAATTTCAATCCAACCATAAGCAAATATTTGATTTTCATTTGAAAAATAAAAATGTATATAAATTGTCATGCCCACCCAT-----------ATTTCTGGTTTAAATACATTCCTGCACAGTGACTTTTCTAGTCCCTTGCTCCTTATTCTGTGATTAAAATCCATGGGTTTGTTACTCTGGAGAAATTATAGAGGAATCCTTTGGATTTTTGAA---------------TTATTTTTTTTAAAGGT-----TTTCATTTGTTATCAAG----AAATGAATATACCCAGC---TTGTAAAGCAGATGCTGGTGCCTTAAACTTTAATATAAGA-----TCTTTCCATTCCTCTTTGAATAAATCAAGACATGTTTTCCTGTTTCCTTTTTATTTAACCATTTTTTTCCCTTGCTTACTTCAGCCCTTTACTTATGGAAGCCCTTTAAAGTGAGGCTATTAGCAGTGCTTCCACAACTGGCTGTGTATCAGAGTAACTGTATTGGCTGGCGTATGTAGAAATTTTAGAAATACACTGTCCTGAGATTCCTATGCCCTTGCCAAGGGCTCAATtcttttctgtttatacggtgtccctagataccatcttatagttttaaggctttaaatcccatctacatattgatggctttcaagtatctatttccagtcttctacattgagcatcaaataggtagttccagctgcctaatttc----------atgc---acaaaattataagtctaaacatagctaaaatagaagtcttgattgcactgagtct----gctctaat--tccagtcttcctcattgtagtaaatgatat
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            210035 909 -    859332 CTCAACTTCTACTCATTCATTTTCTCTTCTCCTTTTACTCAAACTTCCTACAGATCTCCTTTT--ATTTAAAAACTATTTAAAAGTGATCATATATCTCCTAGTTCAAATGGATGTCATAATTTAAGTCCCAACATGAGGAAGTCTCTGCTTTGAATCTGAAAAACCAAAGTATGTGTAAGCTGCCATTCTACTTTATATAAATTGTGCATGTCTACCTTAGTTACATTTCAGCACAGCACCTTTCTTAGGCCCCTGATCCTTATTTCATGATC-TGACCCTTGAGTTTGCTGCTCTGGGGAAA-TAGAGAATAAACATCTGAATTATTTAACAATTAAAAATATTCTCAATATTTTCAAAGATTAGTATTTCATTTGAAATAAAAATTTAAATGTGTATACTTAAAAAGTTGTGAAGTAGGTGTTTTTGCCTCAGAC----ATATGAAGTTTTCCCTTTCTAAACTGCTTTGATGCAACCAAGACATACTTTTC----ACTCTTTTACTTACCCCCGTTTTTCC--TGCCTGCTTTAGCCCTTCATTAATGG--GCCTTACAA-------TTATTAGCAGGGTTGCCCCAACTGACT-CTTAGCAGAATAAC-----TGGGGGAGGGGTGTAG---TGTTAG-AATACAGAGCCCTGAGATTCTTAGACCCTAACCAGCGGTtctattcttgtctgttcacattgtctccctggatgatatcatatagctctaggg-tttaaatgccatctacctagggatgg-tttcaattgtatacttc-agccttcttcactgagcatcaaactggtaattccaactgcctaatttactcacattggatgtttaacaaaagcacaaattt-aacatggcttgaataaaactcttaatt-cccagtatcccatatctcttatcatctagcctttctcatcatagtaaatggtat
i dasNov3.JH570037         C 0 I 2145
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1667034 53839 -   2232465 I
e calJac3.chr4             171558497   0 - 171630274 C

a score=2079707.000000
s hg38.chr6_GL000254v2_alt    316231 371 +   4827813 aaacatgtacctatttctggccagaaaccagtaattaaggagttatccttaattactagcctgccctcatcttgaaaatctgaatgattccaagctcgacttctctccatttccagaatgactaacaaactgggccaccctatttttcctggattacccaatggattactatcttgtttctctgctttaattcattcccctctcaatctattctccatatggcggccaaaagcgttcttt-aaaaaaaccacacgttggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacctgaggtcaggagttcgagaccagcctgataaacatggagaaaccccgtct
s panTro5.chr6              29291283 371 + 175400573 aaacatgtacctatttctggccagaaaccagtaattaaggagttatccttaattactagcctgccctcatcttgaaaatctgaacgattccaagctcgacttctctccatttccagaatgactaacaaactgggccaccctatttttcctggattacccaatggattactatcttgtttctctgctttaattcattcccctttcaatctattctccatatggcggccaaaagcgttcttt-aaaaaaaccacacgttggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacctgaggtcaggagttcgagaccagcctgataaacatggagaaaccccgtct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29537178 371 + 173848474 aaacatgtacctatttctggccagaaaccagtaattaaggagttatccttaattactagcctgccctcatcttgaaaatctgaacgattccaagctcgacttctctccatttccagaatgactaacaaactgggccaccctatttttcctggattacccaatggattactatcttgtttctctgctttaattcattcccctttcaacctattctccatatggcggccaaaagcgttcttt-aaaaaaaccacacgttggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacctgaggtcaggagttcgagaccagcctgataaacatggagaaaccccgtct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5334499 370 +   6154872 aagcatgtacctatttctggtcagaaaccagtaattaaggagttacccttaattactagcctgccctcatcttgaaaatctgaacgattccaagctcgacttctctccatttccagaatgactaacaaactgggccaccctatttttcctggattacccaatggattactatcttgtttctctgctttaattcattcccctttcaatctattctccatatggcggccaaaagcgttcttt-aaaaaaaccacacgttggccgggcgcggtggctcacgcctgtaatccca-cactttgggaggccgaggcgggcagatcacctgaggtcaggagttcgagaccagcctgataaacatggagaaaccccgtct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74347333 366 + 122973662 aaacatctacctatttctggccacaaaccagtaattaaggagttatccttaattactagcctgccctcatcttgaaaagctgaacgattccaagctcggcttctctccatttccagaatgactaacaaactgggccaccctatttttcctggattacccaatggattactatcttgtttctc-----taactcattcccctttcaatctattctccatatggcggccaaaagcattcttt-aaaaaaaccacacgatggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacctgaggtcaggagttcgagaccagcctgataaacatggagaaaccccttct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29503536 367 + 172585720 aaacacctacctatttctagccagaaaccagtaattaaggagttatccttaattactagcctgccctcatcttgaaaatctgaacgattccaagcttgacttgtctccatttctagaatgactaacaaactggg----tctatttttcctggattacccgatgtattcctatcttgtttctctactttaatccattcccctttcaatctattctccatatggcggccaaaagcgttctttaaaaaaag-cacccattggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcgtatcacctgaggtcaggagttcgagaccagcctgataaacgtggagaaactccgtct
i rheMac8.chr4             C 0 I 4
s macFas5.chr4              29164651 367 - 170955103 aaacacctacctatttctagccagaaaccagtaattaaggagttatccttaattactagcctgccctcatcttgaaaatctgaacgattccaagcttgacttgtctccatttctagaatGACTAACAAACTGGG----CCTATTTTTcctggattacccgatgtattcctatcttgtttctctactttaatccattcccctttcaatctattctccatatggcggccaaaagcgttctttaaaaaAAACCACCCATTggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcgtatcacctgaggtcaggagttcgagaccagcctgataaacgtggagaaactccgtc-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2157066 368 -   2996164 aaacacctacctatttctagccagaaaccagtaattaaggagttatccttaattactagcctgccctcatcttgaaaatctgaacgattccaagcttgacttgtctccatttctagaatgactaacaaactggg----cctatttttcctggattacctgatgtattcctatcttgtttctctactttaatccattcccctttcaatctattctccatatggcagccaaaagcgttctttaaaaaAAACCACCCATTggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcgtatcacctgaggtcaggagttcgagaccagcctgataaacgtggagaaactccgtct
i macNem1.NW_012011356v1   C 0 I 4
s cerAty1.NW_012001495v1     2037758 368 -   2157725 aaacacttacctatttctagccagaaaccagtaattaaggagttatccttaattactagcctgccctcatcttgaaaatttgaacgattccaagcttgacttgtctccatttctagaatgactaacaaactggg----cctgtttttcctggattacccaatgtattcctatcttgtttctctactttaatccatttccctttcaatctcttctctatatggcggccaaaagcgttctttaaaaaAAACCACCCATTggctgggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcgtatcacctgaggtcaggagttcgagaccagcctgataaacatggagaaactccgtct
i cerAty1.NW_012001495v1   C 0 I 4
s chlSab2.chr17             28468104 368 -  71996105 aaacacctacctatttctagccagaaaccagtaattaaggagttatccttaattactagcctgccctcaTCTTGAAAATCTGAACGATTCCAAGCTTGACTTATCTCCGTTTCTAGAATGACTAACAAACTGGG----CCTATTTTTcctggattacccaatgtattcctatcttgtttctctactttaatccattcccctttcaatctattctccatatggcggccaaaagcgttctttaaaaaAAACCACCCATTggccgggtgcggtggctcacgcctgtaatcccagcactttgggaagccaaggcgggcgtatcacctgaggtcaggagttggagaccagcctgataaacatggagaaactccgtct
i chlSab2.chr17            C 0 I 4
s manLeu1.NW_012104165v1     2175618 368 +   2316924 aaacacttacctatttctagccagaaaccagtaattaaggagttatccttaattactagcctgccctcatcttgaaaatttgaacgattccaagcttgacttgtctccatttctagaatgactaacaaactggg----cctatttttcctggattacccaatgtattcctatcttgtttctctactttaatccatttccctttcaatctattctccatatggcgaccaaaagcgttctttgaaaaAAACCACCCATTggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcgtatcacctgaggtcaggagttcgagaccagcctgataaacatggagaaactccgtct
i manLeu1.NW_012104165v1   C 0 I 4
s colAng1.NW_012115566v1     2041541 368 -   3067355 aaacacctacctatttctggccagaaaccagtaattaaggagttatccttaattgctagcctgccctcatcttgaaaatctgaacgattctaagcttgacttgactccatttctagaatgactaacaaactggg----cctatttttcctggattacccaatgtattcctatcttgtttctctactttaattcattcccctttcaatctattctccatatggcggccaaaagcgttctttaaagaAAACGACACATTggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggctggcggatcacctgaggtcaggagttcgagaccaatgtgataaacatggagaaactccatct
i colAng1.NW_012115566v1   C 0 I 4
e dasNov3.JH570037            210944 2145 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1667034 53839 -   2232465 I
e calJac3.chr4             171558497   0 - 171630274 C

a score=9571.000000
s hg38.chr6_GL000254v2_alt    316602 21 +   4827813 aacaatacaaaatcaacaata
s panTro5.chr6              29291654 13 + 175400573 aacaatacaaaat--------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29537549 21 + 173848474 aacaatacaaaattaacaata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5334869 21 +   6154872 aacaatacaaaattaacaata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74347699 21 + 122973662 aacaatacaaaattaacaata
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29165018  5 - 170955103 ---tctac-------------
i macFas5.chr4             C 0 C 0
e dasNov3.JH570037            210944 2145 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1667034 53839 -   2232465 I
e calJac3.chr4             171558497  0 - 171630274 C
e colAng1.NW_012115566v1     2041909  4 -   3067355 I
e manLeu1.NW_012104165v1     2175986  4 +   2316924 I
e chlSab2.chr17             28468472  4 -  71996105 I
e cerAty1.NW_012001495v1     2038126  4 -   2157725 I
e macNem1.NW_012011356v1     2157434  4 -   2996164 I
e rheMac8.chr4              29503903  4 + 172585720 I

a score=3187817.000000
s hg38.chr6_GL000254v2_alt    316623 563 +   4827813 caacaatacaaaattagccgggtatggtggcgcatgcctggaatcccagctactctggaggctgagacaggagaatcgcttgaacccgggagacagaggttgctgtgagccgagatcgcaccattgcactccagcctgggcgacagagcgagactgtgtctcgaaa-------aaacaa-------aaaacaa------------------aacccaagaaaaccaaaaccacaaatcaagtatttccatttgccaatttgaaatctttttagacttcctatgcacttaactataaaattcagactccttaccaagaactaccagatgcaccttgcctggctccttttcatccctccct-ccttctcccattcgtctcatgcctttgtcattccAGGGTTGCAGGTGTTAAagtgtctttgcattgaatttcattggcctggcagattctgtccccaaattgaactccttgtttgtaatcgtttttcagatataatctattcaacgagatcttccttgactacttaatctaaattaaaatccctcctccccagctaatctctatcacatttccatgtgtttttcgtagcacttatc
s panTro5.chr6              29291667 563 + 175400573 taacaatacaaaattagccgggtatggtggcgcatgcctgtaatcccagttactctggaggctgagacaggagaatcgcttgaacccgggagacagaggttgcggtgagccgagatcgcaccattgcactccagcctgggtgacagagtgagactctgtctcgaaa-------aaacaa-------aaaacaa------------------aacccaagaaaaccaaaaccacaaatcaagtatttccatttgccaatttgaaatctttctagacttcctatgcacttaacgataaaattcagactccttaccaagaactaccagatgcaccttgcctggctccttttcatccctccct-ccttctcccattcgtctcatgcctttgtcattccAGGGTTGCAGGTGTTAAagtgtctttgcattgaattccattggcctggcagattctgtccccaaattgaactccttgtttgtaatcgtttttcagatataatctattcaacgagatcttccttgactacttaatctaaattaaaatccctcctccccagctaatctctatcacatttccatgtgtttttcgtagcacttatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29537570 563 + 173848474 caacaatacaaaattagccgggtatggtggcgcatgcctgtaatcccagctactctggaggctgagacaggagaatcgcttgaacccgggagacagaggttgcggtgagccgagatcgcaccattgcactccagcctgggcgacagagcgagactctgtctcaaaa-------aaacaa-------aaaacaa------------------aacccaagaaaaccaaaaccacaaatcaagtatttccgtttgccaatttgaaatctttctagacttcctatgcacttaacgataaaattcagactccttacaaagaactaccagatgcaccttgcctggctccttttcatccctccct-ccttctcccattcgtctcatgcctttgtcattccAGGGTTGCAGGTGTTAAagtgtctttgcattgaattccattggcctggcagattctgtccccaaattgaactccttgtttgtaatcgtttttcagatacaatctattcaacgagatcttccttgactacttaatctaaattaaaatccctcctccccagctaatctctatcacatttccatgtgtttttcatagcacttatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5334890 563 +   6154872 caacaatacaaaattagccgggtatggtggcccatgcctgtaatcccagctactctggaggctgagacaggagaatcgcttgaacccgggagacagaggttgcggtgagccgagatcgcaccattgcactccagcctgggcgacagagcgagactctgtctcgaaa-------aaacaa-------aaaacaa------------------aacccaagaaaaccaaaaccacaaatcaagtatttccatttgccaattggaaatctttctagacttcctatgcacttaacgataaaattcagactccttaccaagaactaccagatgcaccttgcctggctccttttcatccctccct-ccttctcccattcgtctcatgcctttgtcattccAGGGTTGCAGGTGTTAAagtgtctttgcattgaatttcattggcctggcagattctgtccccaaattgaactccttgtttgtaatcgtttttcagatataatctattcaacgagatcttccttgactacttaatctaaattaaaatccctcctccccagctaatctctatcacatttccatgtgtttttcgtagcacttatc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74347720 569 + 122973662 caacaatacaaaattagccgggtatggtggcgcatgcctgtaatcccagctactccagaggctgagacaggagaattgcttgaacctgggagacggaggttgcggtgagctgagatcgcactgttgcactccagcctgggggacagagcgagactccatctcaaaaaaacaagaaacaa-------aaaacaa------------------aacccaagaaaaccaaaaccacaaatcaagtatttccatttgccaatttgaaatctttctagacttcctatgcatttag-gataaaattcagagtccttaccaagaactaccagatgcaccttgcctggctcctttt-atccctccctcccttctcccattcgtctcatgcctttgtcattccAGGGTTGCAGGTGTTAAagtgtctttgcattaaatttcattggcctggcagattctgtccccagattgaactccttgtttgtaatcgtttttcagatataatctattcaacgagatctttcttgactacttaatctaaattaaaatccctcctccccagctattctctatcacatttccatgtgtttttcatagcacttatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29503907 583 + 172585720 taacaatatacaattagccgggtgtggtggcgcatgcctgtaatcccagctactccagaggttgagacaggagaatcgcttgaacccgggagacggaggttgtggtgagccgagatggcaccattgcactccagcctgggcaacagagcaagactctgtctcaaaa---caaaaaacaaac-----aaaacaa---aacaacaacaacaaaaacccaagaaaaccaaaaccacaaatcaagtgtttccatttaccaatttgaaatctttctagacttcctatgcacttag-gataaaattcacactccttaccaagaactatcagatgcaccatgcctggctcctttttatccctccct-ccttctcccattcgtctcatgcctttgtcattccAGGGTTGCAGGTGTTAAagggtctttgcattgaatctcattagcctggcagattctgtccccagattgaactccttgtttgtaatcgtttttcagatataatctattcaatgagatctttcttgactacttaatctaaattaaaatccctcctccccagccactctctatcacatttccatgtgtttttcgtagcacttacc
i rheMac8.chr4             I 4 C 0
s macFas5.chr4              29165023 583 - 170955103 taacaatatacaattagccgggtgtggtggcgcatgcctgtaatcccagctactccagaggttgagacaggagaatcgcttgaacccgggagacggaggttgtggtgagccgagatggcaccattgcactccagcctgggcaacagagcaagactctgtctcaaaa---caaaaaacaaac-----aaaacaa---aaCaacaacaacaaaaacccaagaaaaccaaaaccacaaatcaaGTGTTTCCATTTACCAATTTGAAATCTTTCTAGACTTCCTATGCACTTAG-GATAAAATTCACACTCCTTACCAAGAACTATCAGATGCACCATGCCTGGCTCCTTTTTATCCCTCCCT-CCTTCTCCCATTCGTCTCATGCCTTTGTCATTCCAGGGTTGCAGGTGTTAAagggtctttgcattgaatctcattagcctggcagattctgtccccagattgaactccttgtttgtaatcgtttttcagatataatctattcaatgagatctttcttgactacttaatctaaattaaaatccctcctccccagccactctctatcacatttccatgtgtttttcgtagcacttacc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2157438 583 -   2996164 taacaatatacaattagccgggtgtggtggcgcatgcctgtaatcccagctactccagaggttgagacaggagaatcgcttgaacccgggagacggaggttgtggtgagccgagatggcaccattgcactccagcctgggcaacagagcaagactctgtctcaaaa---caaaaaacaaac-----aaaacaa---aaCaacaacaacaaaaacccaagaaaaccaaaaccacaaatcaaGTGTTTCCATTTACCAATTTGAAATCTTTCTAGACTTCCTATGCACTTAG-GATAAAATTCACACTCCTTACCAAGAACTATCAGATGCACCATGCCTGGCTCCTTTTTATCCCTCCCT-CCTTCTCCCATTCGTCTCATGCCTTTGTCATTCCAGGGTTGCAGGTGTTAAagggtctttgcattgaatctcattagcctggcagattctgtccccagattgaactccttgtttgtaatcgtttttcagatataatctattcaatgagatctttcttgactacttaatctaaattaaaatccctcctccccagccactctctatcacatttccatgtgtttttcgtagcacttacc
i macNem1.NW_012011356v1   I 4 C 0
s cerAty1.NW_012001495v1     2038130 585 -   2157725 tgacaatatacaattagccaggtgtggtggcgcatgcctgtaatcccagctactccagaggctgagacaggagaatcgcttgaactcgggagacggaggttgtggtgagccgagatcgcaccattgcactccagcctgggcgacagagcaagactccgtctcaaaa---caaaaaacaaac-----aaaacaaaacaacaacaacaacaaaaacCCAAGAAAACCAaaaccacaaatcaagtgtttccatttaccagtttgaaatctttctagacttcctatgcacttag-gataaaattcacactccttatcaagaactatcagatgcaccatgcctggctcctttttatccctccct-ccttctcccattcgtctcatgcctttgtcattccagggttgcaggtgttaaagggtctttgcattgaatctcattggcctggcagattctg-ccccagattgaactccttgtttgtaatcgtttttcagatataatctattcaatgagatctttcttgactacttaatctaaattaaaatccctcctccccagccattctctatcacatttccctgtgtttttcgtagcacttatc
i cerAty1.NW_012001495v1   I 4 C 0
s chlSab2.chr17             28468476 576 -  71996105 taacaatatacaattagccgggtgtggtggcgcatgcctgtaatcccagctactccagaggctgagacaggagaatcgcttgaacccgggatacggaggttgtggtgagccgagatcgcaccattgcactccagcatgggcgacagagcaagactccgtctcaaaa---caa--------------aaaacaaaacaa-aaCAACAACAAAAACCCAAGAAAACCAAAACCACAAATCAAGTGTTTCCATTTACCAATTTGAAATCTTTCTAGACTTCCTATGCACTTAG-TATAAAATTCACACTCCTTACCAAGAACTATCAGATGCACCATGCCTGGCTCCTTTTTATCCCTCCCT-CCTTCTCCCATTCGTCTCATGCCTTTGTCATTCCAGGGTTGCAGGTGTTAAagggtctttgcattgaatctcattggcctggcagattctgtccccagactgaactccttgtttgtaatcgtttttcagatataatctattcaatgagatctttcttgactacttaatctaaattaaaatccctcctccccagccactctctatcacatttccatgtatttttcatagcacttatc
i chlSab2.chr17            I 4 C 0
s manLeu1.NW_012104165v1     2175990 590 +   2316924 taacaatatacaattagccgggtgtggtggcgcatgcctgtaatcccagctactccagaggctgagacaggagaatcgcttgaactcgggagacggaggttgtggtgagccgagatcgcaccattgcactccagcctgggcgacagagcaagactccgtctcaaaa---caaaaaacaaacaaaacaaaacaaaacaacaacaacaacaaaaacCCAAGAAAACCAaaaccacaaatcaagtgtttccatttaccagtttgaaatctttctagacttcctatgcacttag-gataaaattcacactccttaccaagaactatcagatgcaccatgcctggctcctttttatccctccct-ccttctcccattggtctcatgcctttgtcattccagggttgcaggtgttaaagggtctttgcattgaatctcattggcctggcagattctg-ccccggattgaactccttgtttgtaatcgtttttcagatataatctattcaatgagatctttcttgactacttaatctaaattaaaatccctcctccccagccattctctatcacatttccctgtgtttttcgtagcacttatc
i manLeu1.NW_012104165v1   I 4 C 0
s colAng1.NW_012115566v1     2041913 586 -   3067355 tgacaatatacaattagccgggtgtggtggcgcatgcctgtaatcccagctactccataggctgagacaggagaatcgcttgaacccgggagacggaggttgtggtgagccgagatcacaccattgcactccagcctgggcgacagagcaagactccgtctcaaaa---caaaaaacaaacaaaacaaaacaaaacaacaacaacaacaaaaacCCAAGAAAACCAaaaccacaaatcaagtgtttccatttaccagtttgaaatctttctagacttcctatgcacttag-gataaaattcacactccttaccaagaactatcagatgcaccatgcctggctcctttttatccctccct-c---ctcccattcgtctcatgcctttgtcattccAGGGTTGCAGGTGTTAAagggtctttgcattgaatttcattggcctggcagattctgtccccagattgagctccttgtttgtaattggttttcagatataatctattaagtgagatctttcttgactacttaatctaaattaaaatccctcctccccagccactctctatcacatttccatg--tttttcgtagcacttacc
i colAng1.NW_012115566v1   I 4 C 0
e dasNov3.JH570037            210944 2145 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1667034 53839 -   2232465 I
e calJac3.chr4             171558497   0 - 171630274 C

a score=1580726.000000
s hg38.chr6_GL000254v2_alt    317186 251 +   4827813 actctaaattttgttttttttaaatgtatctccccacaattaaaacctaagatccaAACGAATATGGATCTGAT--CCCCCTTTTTTGCCACGTAACTGAATGAATCAATTCAACAAATTTGATTAgcaatagaaatatagcaaacaactaaatagacaaaacagtaaagtccctgacttaatggagcttacttttaTTTGTGAAAACAAGCTCATCAGCCAAattatatatagtgttttatttgttcattgc----
s panTro5.chr6              29292230 251 + 175400573 actctaaattttgttttttttaaatgtatctccccacaattaaaacctaagatccaAACGAATATGGATCTGAT--CCCCCTTTTTTGCCACGTAACTGAATGAATCAATTCAACAAATTTGATTAgcaatagaaatatagcaaacaactaaatagacaaaacagtaaagtccctgacttaatggagcttacttttatttgtgaaaacaagCTCATCAGCCAAattatatatagtgttttatttgttcattgc----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29538133 250 + 173848474 actctaaattttg-tttttttaaatgtatctccccacaattaaaacctaagatccaAACGAATATGGATCTGAT--CCCCCTTTTTTGCCACGTAACTGAATGAATCAATTCAACAAATTTGATTAgcaatagaaatatagcaaacaactaaatagacaaaacagtaaagtccctgacttaatggagcttacttttatttgtgaaaacaagCTCATCAGCCAAattatatatagtgttttatttgttcattgc----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5335453 251 +   6154872 attctaaattttgtttttttaaaatgtatctccccacaattaaaacctaagatccaAACGAATATGGATCTGAT--CCCCCTTTTTTGCCACGTAACTGAGTGAATGAATTCAACAAATTTGATTAgcaatagaaatatagcaaacaactaaatagacaaaacagtaaagtccctgacttaatggagcttgcttttatttgtgaaaacaagctcatcaaccaaattatatatagtgttttatttgttcattgc----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74348289 250 + 122973662 actctaaattttgttttgttaaaatgtatctccccacaattaaaacctaaggtccaAACGAATATGGATCTGAT--CCCCCTTGTTTGCCACATAACTGAATGAATCAATCTAACAAATTTGATTAgcaatagaaatatagcaaacaactaaatagacaaaacaataaagtccctgacctaatggagcttacttttaTTTGTGAAAACAAGCTCATCAGCCAAAttatatatagtg-tttatttgttcattgc----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29504490 249 + 172585720 actctaaattttgttttttaaaaatgtatctccccacaattaaaacctaagatccaAACGAATACGGATCTGATTCCCCCCTTGTTTGCCACATAACTGAATGAATCAATTCAGCAAATTTGATTAgcaatagaaatatagcaaacaacta---atacaaaacaggaaagtccctgacctaatggagcttgctttTCTTTGTGAAAACAAGCTCATCAGCCAAATTATATAAAGTG-TTTATTTGTTCATTGC----
i rheMac8.chr4             C 0 I 5
s macFas5.chr4              29165606 249 - 170955103 acTCTAAATTTTGTTTTTTAAAAATGTATCTCCCCACAATTAAAACCTAAGATCCAAACGAATACGGATCTGATTCCCCCCTTGTTTGCCACATAACTGAATGAATCAATTCAGCAAATTTGATTAgcaatagaaatatagcaaacaacta---atacaaaacaggaaagtccctgacctaatggagcttgctttTCTTTGTGAAAACAAGCTCATCAGCCAAATTATATAAAGTG-TTTATTTGTTCATTGC----
i macFas5.chr4             C 0 I 5
s macNem1.NW_012011356v1     2158021 249 -   2996164 actctaaattttgttttttaaaaatgtatctccccacaattaaaacctaagatccaAACGAATACGGATCTGATTCCCCCCTTGTTTGCCACATAACTGAATGAATCAATTCAGCAAATTTGATTAgcaatagaaatatagcaaacaacta---atacaaaacaggaaagtccctgacctaatggagcttgctttTCTTTGTGAAAACAAGCTCATCAGCCAAATTATATAAAGTG-TTTATTTGTTCATTGC----
i macNem1.NW_012011356v1   C 0 I 5
s cerAty1.NW_012001495v1     2038715 247 -   2157725 actctaaattttgttttttaaaaatgtatctccccacaattaaaacctaagatccaAACGAATACGGATCTGAT--CCCCCTTGTTTGCCACATAACTGAATGAATCAATTCAGCAAATTTGATTAgcaatagaaatatagcaaacaacta---agacaaaacaggaaagtccctgacctaatggagcttgctttTCTTTGTGAAAACAAGCTCATCAGCCAAATTATATAAAGTG-tttatttgttcattgc----
i cerAty1.NW_012001495v1   C 0 I 12
s chlSab2.chr17             28469052 247 -  71996105 actctaaattttgttttttaaaaatatatctccccacaattaaaacctaagatccaaacgaatacggatctgat--cccccttgtttgccacATAACTGAATGAATCAATTCAGCAAATTTGATTAgcaatagaaatatagcaaacaacta---agacaaaacaggaaagtccctgacctaatggagcttgctttTCTTTGTGAAAACAAGCTCATCAGCCAAATTATATAAAGAA-tttatttgttcattgc----
i chlSab2.chr17            C 0 I 268
s manLeu1.NW_012104165v1     2176580 247 +   2316924 actctaaattttgttttttaaaaatgtatctccccacaattaaaacctaagatccaaacgaatacggatctgat--cccccttgtttgccacATAACTGAATGAATCAATTCAGCAAATTTGATTAgcaatagaaatatagcaaacaacta---agacaaaacaggaaagtccctgacctaatggagcttgctttTCTTTGTGAAAACAAGCTCATCAGCCAAATTATATAAAGTG-tttatttgttcattgc----
i manLeu1.NW_012104165v1   C 0 I 13
s colAng1.NW_012115566v1     2042499 247 -   3067355 actctaaattttgttttttaaaaatgtatctccccacaattaaaacctaagatccaaacgaatacggatctgat--cccccttgtttgccacATAACTGAACGAATCAATTCAGCAAATTTGATTAgcaatagaaatatagcaaacaacta---agacaaaacaggaaagtccctgacctaatggagcttgctttTCTTTGTGAAAACAAGCTCATCAGCCAAATTATATAAAGTG-CTTATTTGTTCACTGC----
i colAng1.NW_012115566v1   C 0 I 11
s calJac3.chr4             171558497 250 - 171630274 ACCCTAAATTTTGTTTTTTT--AATGTATC-CCCCACAATTAAAACCTGAGATCCCAATGAATGTAGATCTGAT--CCCTCTTGTTCACCACATAACTGAATGAATCAAATCAACAAATTTGATTAGCCATAGAAATATAGCAAATAAGTAAATAGACAAAAGAAGAAAATCCCTGACCTAATGGAGC-TACTTTTATTTGTGAAAACAAGCCCATTAACCAGATCATATGTTGTG-TTCATTTGTTCATCACTTGT
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            210944 2145 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1667034 53839 -   2232465 I

a score=31578.000000
s hg38.chr6_GL000254v2_alt    317437 5 +   4827813 ttttt
s panTro5.chr6              29292481 5 + 175400573 ttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29538383 5 + 173848474 ttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5335704 5 +   6154872 ttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74348539 5 + 122973662 ttgtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29504744 5 + 172585720 TTTTT
i rheMac8.chr4             I 5 C 0
s macFas5.chr4              29165860 5 - 170955103 TTTTT
i macFas5.chr4             I 5 C 0
s macNem1.NW_012011356v1     2158275 5 -   2996164 TTTTT
i macNem1.NW_012011356v1   I 5 C 0
s cerAty1.NW_012001495v1     2038974 5 -   2157725 ttttt
i cerAty1.NW_012001495v1   I 12 C 0
s chlSab2.chr17             28469567 5 -  71996105 ttttt
i chlSab2.chr17            I 268 C 0
s manLeu1.NW_012104165v1     2176840 5 +   2316924 ttttt
i manLeu1.NW_012104165v1   I 13 C 0
s colAng1.NW_012115566v1     2042757 5 -   3067355 ttttt
i colAng1.NW_012115566v1   I 11 C 0
s calJac3.chr4             171558747 4 - 171630274 -TTTT
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            210944 2145 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1667034 53839 -   2232465 I

a score=3413372.000000
s hg38.chr6_GL000254v2_alt    317442 498 +   4827813 t---------------------tt------tc-tttctttttttatat--aACATCCCACCAAATAGAAACATTCTCTCTTTAGGAATAGTGTTCCGTGTAGATGTTGATTTCTTACTATGCAATTTTACGGACATTGTCTTCCAATATTTCCGTAG----ACTAATTGGTCAGGACCTGATAGCCCTGTGATAATGCTGCACTCAGCATTCCTTGATGATGCTATATTAGCTTCCAGTGGCTGTTTGgtgcctggaagggagtctagcatgtaacagggatcaataattgtttgttgaCTATAAAGCAGTTAGAACAATATCTGATGTGTATAT---TAAATATCCCATTCAGTCAAGGTTATCTAGGGTGATATATTCAAGAAAT---ATAATGCTAACTCATTTATGTGGTGATGGAGATCCGTGTTTAATGATATTGATCATCAAATAGCCTGGATAAAGAGTATGTTCCCAGAAGAAAGA----------------------------------------GATTTCTGAGACTGCTTTTATGTTATCCTTTAC--ATTTC---TAttttttgac--tctt
s panTro5.chr6              29292486 503 + 175400573 t----------------ttttatt------tc-tttctttttttatgt--aACATCCCACCAAATAGAAACATTCTCTCTTTAGGAATAGTGTTCCGTGTAGATGTTGATTTCTTGCTATGCAATTTTACGGACATTGTCTTCCAATATTTCCGTAG----ACTAATTGGTCAGGACCTGATAGCCCTGTGATAATGCTGCACTCAGCATTCCTTGATGATGCTATATTAGCTTCCAGTGGCTGTTTGgtgcctggaagggggtctagcatgtaacagggatcaataattgtttgttgaCTATAAAGCAGTTAGAACAATATCTGATGTGTATAT---TAAATATCCCATTCAGTCAAGGTTATCTAGGGTGATATATTCAAGAAAT---ATAATGCTAACTCATTTATGTGGTGATGGAGATCCGTGTTTAATGATATTGATCATCAAATAGCCTGGATAAAGAGTATGTTCCCAGAAGAAAGA----------------------------------------GATTTCTGAGACTGCTTTTATGTTATCCTTTAC--ATTTC---TAttttttgac--tctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29538388 501 + 173848474 t------------------ttatt------tc-tttctttttttatat--aACATCCCACCAAATAGAAACATTCTCTCTTTAGGAATAGTGTTCCGTGTAGATGTTGATTTCTTACTATGCAATTTTACGGACATTGTCTTCCAATATTTCCGTAG----ACTAATTGGTCAGGACCTGATAGCCCTGTGATAATGCTGCACTCAGCATTCCTTGATGATGCTATATTAGCTTCCAGTGGCTGTTTGgtgcctggaagggggtctagcatgtaacagggatcaataattgtttgttgaCTATAAAGCAGTTAGAACAATATCTGATGTGTATAT---TAAATATCCCATTCAGTCAAGGTTATCTAGGGTGATATATTCAAGAAAT---ATAATGCTAACTCATTTATGTGGTGATGGAGATCCGTGTTTAATGATATTGATCATCAAATAGCCTGGATAAAGAGTATGTTCCCAGAAGAAAGA----------------------------------------GATTTCTGAGACTGCTTTTATGTTATCCTTTAC--ATTTC---TAttttttgac--tctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5335709 499 +   6154872 t-----------------tttatt------tc-tttctttttttATAT--AACATCCCACCAAATAGAAACATTCTCTCTTTAGGAATAGTGTTCCGTGTAGATGCTGATTTCTTACTATGCAATTTTACGGACATTGTCTTCCAATATTTCCGTAG----ACTAATTGGTCAGGACCTGATAGCCCTGTGATAATGCTGCACTCAGCATTCCTTGATGATGCTATATTAGCTTCCAGTGGCTGTTTGgtgcctggaagggggtctagcatgtaacagggatcaataattgtttgttgaCTATAAAGCAGTTAGAACAATATCTGATGTGTATAT---TAAATATCCCATTCAGTCAAGGTTATCTAGGGTGATATATTCAAGAAAT---ATAATGCTAACTCATTTATGTGGTGATGGAGATCCGTGTTTAATGATATTGATCATCAAATAGCCTGGATAAAGAGTATGTTTCCAGAAGAAAGA----------------------------------------GATTTCTGAGA---CTTTTATGTTATCCTTTAC--ACTTC---TAttttttgac--tttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74348544 517 + 122973662 ttttttgtttgtttgtttttgatt------tc-tttctttttttatat--aACATCTCACCAAATAGGAACATTCTCTCTTTAGGAATAGTGTTCCGTGTGGATGTTGATTTCTTACTATGCGATTTTACAGATATTGTCTTCCAATATTTCCATAG----ATTAATTGGTCAGGACCTGATAGCCCTGTGATAATGCTGCACTCAGCATTCCTTGATGATGCTATATTAGCTTCCAGTGGCTGTTTGgtgcctggaagggggtctagcatgtaacagggatcaataattgtttgttgaCTATAAAGCAGTTAGAACAATATCTAATGTGTATAT---TAAATATCCCATTCAGTCAAGGTTATCTAGGGTGATATATTCAAGAAAT---ATAATGCTAACTCATTTATGTGGTGATGGAGATCAGTGTTTAATGATACTGATCATCAAATAGCCTGGATAAAGAGTATGTTCCCAGAAGAA--A----------------------------------------GATTTCTGAGACTGCTTTTATGTTATCCTTTAC--ATTTC---TATTTTTTGAC--tttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29504749 503 + 172585720 T----------------TCTGATC------TA-TTTTTTTTTAAATAT--AACATCCCACCAAATAGGAACATTCTTTCTTTAGGAATAGCATCCCATGTGGATGTTGATTTCTTACTATGTGATTTTACAGACATTGTCTTCCAGTATTTCCGTAG----ACTAACTGGTCAGGACCTGTTAGCCCTGTGATAATGCTGCACTCAGCATTCCTTGATGATGTCATTTTAGCTTCCAGTGGCTGCTTGgtgcctggaagggggtctagcatgtaacagggatcaataaatgtttgttgaCTATAAAGCAGTTAGAGCAATATCTGATGTGTATAT---TAAATATCCCATTCAGTCAAGATTATCTAGGGTGATATATTCAAGAAAT---ACAATGCTAATGCATTTATGTGGTGATGGAGATCAGAGTTTAATGATATTGATCATCAAATAGCCTGGATAAAGAGTATGTTCCCACAAGAAAGA----------------------------------------GATTTCTGAGACTGCTTTTATGTTATCCTTTAC--Atttc---tattttttgac--tttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29165865 503 - 170955103 T----------------TCTGATC------TA-TTTTTTTTTAAATAT--AACATCCCACCAAATAGGAACATTCTTTCTTTAGGAATAGCATCCCATGTGGATGTTGATTTCTTACTATGTGATTTTACAGACATTGTCTTCCAGTATTTCCGTAG----ACTAACTGGTCAGGACCTGTTAGCCCTGTGATAATGCTGCACTCAGCATTCCTTGATGATGTCATTTTAGCTTCCAGTGGCTGCTTGgtgcctggaagggggtctagcatgtaacagggatcaataaatgtttgttgaCTATAAAGCAGTTAGAGCAATATCTGATGTGTATAT---TAAATATCCCATTCAGTCAAGATTATCTAGGGTGATATATTCAAGAAAT---ACAATGCTAATGCATTTATGTGGTGATGGAGATCAGAGTTTAATGATATTGATCATCAAATAGCCTGGATAAAGAGTATGTTCCCACAAGAAAGA----------------------------------------GATTTCTGAGACTGCTTTTATGTTATCCTTTAC--ATTTC---TAttttttgac--tttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2158280 503 -   2996164 T----------------TCTGATC------TA-TTTTTTTTTAAATAT--AACATCCCACCAAATAGGAACATTCTTTCTTTAGGAATAGCATCCCATGTGGATGTTGATTTCTTACTATGTGATTTTACAGACATTGTCTTCCAGTATTTCCGTAG----ACTAACTGGTCAGGACCTGTTAGCCCTGTGATAATGCTGCACTCAGCATTCCTTGATGATGTCATTTTAGCTTCCAGTGGCTGCTTGgtgcctggaagggggtctagcatgtaacagggatcaataaatgtttgttgaCTATAAAGCAGTTAGAGCAATATCTGATGTGTATAT---TAAATATCCCATTCAGTCAAGATTATCTAGGGTGATATATTCAAGAAAT---ACAATGCTAATGCATTTATGTGGTGATGGAGATCAGAGTTTAATGATATTGATCATCAAATAGCCTGGATAAAGAGTATGTTCCCACAAGAAAGA----------------------------------------GATTTCTGAGACTGCTTTTATGTTATCCTTTAC--Atttc---tattttttgac--tttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2038979 506 -   2157725 t----------------cctgatt------tctttttttttttAATAT--AACATCCCACCAAATAGGAACATTCTCTCTTTAGGAATAGCATCCCGTGTGGATGTTGATTTCTTACTATGTGATTTTACAGACATTGTCTTCCAGTATTTCTGTAG----ACTAACTGATCAGGACCTGTTAGCTCTGTGACAATGCTGCACTCAGCATTCCTTGATGATGTCATTTTAGCTTCCAGTGGCTGCTTGgtgcctggaaggtggtctagcatgtaacagggatcaataaatgtttgttgaCTATAAAGCAGTTAGAGCAATATCTGATGTGTATAT---TAAATATCCCATTCAGTCAAGATTATCTAGGGTGATATATTCAAGAAAT---ACAATGCTAATGCATTTATGTGGTGATGGAGATCAGAGTTTAATGATATTGATCATCAAATAGCCTGGATAAAGAGTATGTTCCTACAAGAAAGA----------------------------------------GATTTCTGAGACTGCTTTTATGTTATCCTTTAC--ATTTC---TAttttttgactttttt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28469572 496 -  71996105 t-----------------------------tt-ttttttttttAATAT--AACATCCCACCAAATAGGAACATTCTCTCTTTAGGAATAGCATCCCGTGTGGATGTTGATTTCTTACTATGTGATTTTACAGACATTGTCTTCCAGTATTTCCGTAG----ACTAACTGGTCAGGACCTGTTAGCCCTGTGTTAATGCTGCACTCAGCATTCCTCGATGATGTCATTTTAGCTTCCAGTGGCTGCTTGgtgcctggaagggagtctagcatgtaacagggatcaataaatgtttgttgaCTATAAAGCAGTTAGAGCAATATCTGATGTGTATAT---TAAATATCCCATTCAGTCAAGATTAACTAGGGTGATATATTCAAGAAAT---ACAATGCTAATGCATTTATGTGGTGATGGAGATCAGAGTTTAATGATATTGATCATCAAATAGCCTGGATAAAGAGTATGTTCCCACAAGAAAGA----------------------------------------GATTTCTGAGACTGCTTTTATGTTATCCTTTAC--ATTTC---TAttttttgac--tttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2176845 511 +   2316924 t----------------cctgatttc----tt-tttttttttAAATAT--AACATCCCACCAAATAGGAACATTCTCTCTTTAGGAATAGCATCCCGTGTGGATGTTGATTTCTTACTATGTGATTTTACAGACATTGTCTTCCAGTATTTCTGTAGACTAACTAACTGGTCAGGACCTGTTAGCCCTGTGACAATGCTGCACTCAGCATTCCTTGATGATGTCATTTTAGCTTCCAGTGGCTGCTTGgtgcctggaaggtggtctagcatgtaacagggatcaataaatgtttgttgaCTATAAAGCAGTTAGAGCAATATCTGATGTGTATAT---TAAATATCCCATTCAGTCAAGATTATCTAGGGTGATATATTCAAGAAAT---ACAATGCTAATGCATTTATGTGGTGATGGAGATCAGAGTTTAATGATATTGATCATCAAATAGCCTGGATAAAGAGTATGTTCCTACAAGAAAGA----------------------------------------GATTTCCGAGACTGCTTTTATGTTATCCTTTAC--ATTTC---TAttttttgactttttt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2042762 507 -   3067355 t----------------tctgatttctttttt-ttttttttttAATAT--AACATCCCACCAAATACGAACATTCTCTCTTTAGGAACAGCATTCCGTGTGGATGTTGATTTCTTATTATGTGATTTTACAGGCATTGTCTTCCAGTATTTCTGTAG----ACTAACTGGTCAGGACCTGTTAGCTCTGTGATAATGCTGCACTCAGCATTCCTTGATGATGTCATATTAGCTTCCAGTGGCTGCTTGGTGCCTGGAAGGGGGTCTAGCATGTAACAGGGATCAATAAAAGTTTGTTGACTATAAAGCAGTTAGAGCAATATCTGATGTGTATAT---TAAATATCCCATTCAGTCAAGATTATCTAGGGTGATATATTCAAGAAAT---ATAATGCTAATGCATTTATGTGGTGATGGAGATCAGAGTTTAATGATATTGATCATCAAATAGCCTGGATAAAGAGTGTGTTCCCACAAGAAAGA----------------------------------------GATTTCTGAGACTGCTTTTATGTTATCCTTTAC--Atttc---tattttttgac----tt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171558751 497 - 171630274 T----------------TCTGATTTC----TT-TCTTTTTTTTAATAT--AACATCCTACCAAATAGAAACATTCTTTTTTT------AGTGTTCCATGTGGATGTTGATTTCTTCCCCTGTGATTTTACAGACATTGTCTTCCAATATTTCTGTAG----ACTAATTGGTCAGGA-CTGTTAGCCCTGTGATCATGCTGCACTCAGCATTCTCTGGTGATGCTATATCGGCTTCCAGTGGCTGctcggtgcctggaagggggtctagcatgtaacagggaccaataaatgtttgttgaCTATAAAGCAGTTAGAACAATATCTGATATGTATAT---TAAATATCCCATTTAATCGAGATTATCTAGGTTGAAACATTGAA-AAGT---TTAATGCTAGCTTATTTATGTGGTGATGGAGATCAGTATTTAATGATACTCATCATCAAATAGCCTGAATAAAGGGTATGTTCCCAGAAGAAAAA----------------------------------------GACCTCGGAGATTGCTTTTATGTTATCCTTTAC--ATTTA---TATTTTTTGAC--Tttt
i calJac3.chr4             C 0 C 0
s dasNov3.JH570037            213089 530 -    859332 -----------------TTTTCTG------TA-TTATTTTTAAAAAATTCAACATCCCACCGAATTGG-----TCTCTCTCCGGGAATCATGTTCCAGTCAGTCCTTTTTTTCTTCCTGTGTGCTTTTAGGGGCAATGTCTCCCAATATTTCCAAAT----AATAATTAATCAGGAACTGTTAGCTCTGTGGGAAATCTGTGCTCAGGCTTCCCAGATGCTTTTCTAACGGCTTCCACTGGCTCTTCAGTGCCTGGAAGAT-GTTGACCATATAGTAGGGAT-AAT----------------CAAAATCATTAGAACAATGCCTGATATATATATATCAAAATGTCACATTGAGTAAATTTTACCTGTGAAGGTATGTACATAAAATGTAATAATGCAAACTCATTAA--ATGTAATGGAGGTCTATAGTTAATGACATGAATCATTAAATAGTCTGTATAAAAAGTATGTTCCAAGCAAAACAAGTGTCCAGAAATAAAGTCAGAGAGTACCCCTGGGTGACCTGATTTCTAAAATTGCTTTCACATTATTCTCTGTGGATTTTCAGTATCATTTGAT--TTTT
i dasNov3.JH570037         I 2145 N 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1667034 53839 -   2232465 I

a score=2078565.000000
s hg38.chr6_GL000254v2_alt    317940 340 +   4827813 ttttttttggcttttggcttttggcttttgggt----ctcactctgtcaccc-------aggctgaagtatagtggtgtgatcatggctcattttggcctcaaactcttgggctcaagcaatcctcccatttcagtctttccagtcactgggattaatggtgtgtgccacaaaacttggctctgtttga-----ttttttTTTTTTGGTGGACCATATATTTTACCAAAATATCTGAAATATTGTAAATGATATTTTTTGAAATATCGGAAAATATTTTTGGTATATTTTGGGGAAAA------ATACAAAACCAAAACAATCTACCTATTT-ACCTTCTCGTGAACTTATGAAATCAAATAT
s panTro5.chr6              29292989 331 + 175400573 ttttt------ttttggcttttggcttttgggt----ctcactctgtcaccc-------aggctgaagtatagtggtgtgatcatggctcattttggcctcaaactcttgggctcaagcaatcttcccatttcagtctttccagtcactgggattaatggtgtgtgccacaaaacttggctctgtttga--------ttttttTTTGGTGGACCATATATTTTACCAAAATATCTGAAATATTGTAAATGATATTTTTTGAAATATCGGAAAATATTTTTGGTATAGTTTGGGGAAAA------ATACAAAACCAAAACAATCTACCTATTT-ACCTTCTCGTGAACTTATGAAATCAAATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29538889 330 + 173848474 ttt--------ttttggcttttggcttttgggt----ctcactctgtcaccc-------aggctgaagtatagtggtgtgatcatggctcattttggcctcaaactcttgggctcaagcaatcttcccatttcagtctttccagtcactgggattaatgctgtgtgccacaaaacttggctctgtttga-------ttttttTTTTGGTGGACCATATATTTTACCAAAATATCTGAAATATTGTAAATGATATTTTTTGAAATATCGGAAAATATTTTTGGTATATTTTGGGGAAAA------ATACGAAACCAAAACAATCTACCTATTT-ACCTTCTCGTGAACTTATGAAATCAAATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5336208 333 +   6154872 ttttt------ttttggcttttggcttttgggt----ctcactctgtcaccc-------aggctgaagtatagtggtgtgatcatggctcattttggcctcaaactcttgggctcaagcaatcctcccatttcaatctttccagtcactgggattactggtgtgtgccacaaaacttggctctgtttga-------ttttttTTTTGGTGGACCATATATTTTACCAAAATATCTGAAATATTGTAAATGATATTTTTTGAAATATCGGAAAATATTTTTGGTATATTTTGGGGAAAA------ATACAAAACCAAAACAATCTACCTATTTAACCTTCTCGTGAACTTATGAAATCAAATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74349061 348 + 122973662 tttttttttt-tttttttttttGGCTTTTgggt----ctcactctgtcaccc-------aggctaaagtgtagtggtgtgatcatggctcattttggcctcaaactcttgggctcaagcaatcctcccatttcagtctttccaatcactgggattactggtgtgtgccacAAAACTTGGCTGTGTTTGAtttttttttttttttttGGTGGACCATATATTTTACCAAAATATCTGAAATATTGTAAATGATATTTTTTGAAATATCAGAAAATATTTTTGGCATACTTTGGGGAAAAAAGC--AAACAAAACCAAAACAATTTACCTGTTT-ACCTTCTCGTGAACTTATGAAATCAAATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29505252 335 + 172585720 ttttt------ttttggcttttgacttttgggt----ctca--ctgtcaccc-------agactggagtgtggtggtgtgatcatggctcattttggcttcaaactcttgggctcaagagatcctgccatttcagtctttccagtcactgggattactggtgtgtgccacaaaacttggctctgtttga--------ttattttttgGTGGACCATATATTTTACCAAAGTATCTGAAATATTGTAAATGATATTTATTGAAATATCAGAAAATATTTTTGGCATACTTTGGGGAAAAAAGCAAACACAAAACCAAAGCAATTTACCTATTT-ACCTTCTCATTAACTTATGAAATCAAATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29166368 335 - 170955103 ttttt------ttttggcttttgacttttgggt----ctca--ctgtcaccc-------agactggagtgtggtggtgtgatcatggctcattttggcttcaaactcttgggctcaagagatcctgccatttcagtctttccagtcactgggattactggtgtgtgccacaaaacttggctctgtttga--------ttattttttgGTGGACCATATATTTTACCAAAGTATCTGAAATATTGTAAATGATATTTATTGAAATATCAGAAAATATTTTTGGCATACTTTGGGGAAAAAAGCAAACACAAAACCAAAGCAATTTACCTATTT-ACCTTCTCATTAACTTATGAAATCAAATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2158783 335 -   2996164 ttttt------ttttggcttttgacttttgggt----ctca--ctgtcaccc-------agactggagtgtggtggtgtgatcatggctcattttggcttcaaactcttgggctcaagagatcctgccatttcagtctttccagtcactgggattactggtgtgtgccacaaaacttggctctgtttga--------ttattttttgGTGGACCATATATTTTACCAAAGTATCTGAAATATTGTAAATGATATTTATTGAAATATCAGAAAATATTTTTGGCATACTTTGGGGAAAAAAGCAAACACAAAACCAAAGCAATTTACCTATTT-ACCTTCTCATTAACTTATGAAATCAAATAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2039485 333 -   2157725 ttttt------ttttggcttttgacttttgggt----ct----ctgtcaccc-------agactggagtgtggtggtgtgatcatggctcattttggcttcaaactcttgggctcaagagatcctcccatttcagtctttccagtcactgggattactggtgtgtgccacaaaacttggctctgtttga--------ttttttTTTGGTGGACCATATATTTTACCAAAGTATCTGAAATATTGTAAATGATATTTATTGAAATATCAGAAAATATTTTTGGCATACTTTGGGGAAAAAAGCAAACACAAAACCAAAACAATTTACCTATTT-ACCTTCTCGTGAACTTATGAAATCAAATAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28470068 337 -  71996105 ttttt------ttttggcttttgacttttgggtctcact----ctgtcaccc-------agactggagtgtggtggtgtgatcatggctcattttggcttcaaactcttgggctctagagatcctcccatttcagtctttccagtcactgggattactggtgtgtgccacaaaacttggctctgtttga--------ttttttTTTGGTGGACCATATATTTTACCAAAGTATCTGAAATATTGTAAATGATATTTATTGAAATAGCAGAAAATATTTTTGGCATACTTTGGGGAAAAAAGCAAACACAAAACCAAAACAATTTATCTATTT-ACCTTCTCGTGAACTTATGAAATCAATTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2177356 333 +   2316924 ttttt------ttttggcttttgacttttgggt----ct----ctgttaccc-------agactggagtgtggtggtgtgatcatggctcattttggcttcaaactcttgggctcaagagatcctcccatttcagtctttccagtcactgggattactggtgtgtgccacaaaacttggctctgttata--------ttttttTTTGGTGGACCATATATTTTACCAAAGTATCTGAAATATTGTAAATGATATTTATTGAAATATCAGAAAACATTTTTGGCATACTTTGGGGAAAAAAGCAAACACAAAACCAAAACAATTTACCTATTT-ACCTTCTCGTGAACTTATGAAATCAAATAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2043269 340 -   3067355 ttttt------ttttggcttttgacttttgggt----ctcactctgtcaccc-------aggctggagtgtggtggtgtgatcatggctcattttggctttaaactcttgggctcaagagatcctcccatttcagtctttccagtcactggggttactggtgtgtaccacaaaacttgactctgtttga-----ttttttTTTTTTGGTGGACCATATATTTTACCAAAGTATCTGAAATATTGTAAATGATATTTGTTGAAATATCAGAAAATATTTTTGGCATACTTTGGGGAAAAAAGCAAACACAAAACCAAAACAATTTACCTATTT-ACCTTCTCGTGAACTTATGAAACCAAATAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171559248 334 - 171630274 ttttt------ttttggc-tttatttttttttt----ttttctctgtcgccaaagagtgaggctggagtgtagtggtgtgatca----------tggcctcaaattcctgggctcaaatgatcctcccattttagtctttccagtcactgggattgcaggtgtgtgccacAAAACATGGCTCTGTTTGA------CTTTTTTTTTTGGTGGACCATATATTTTACCAAAATATCTGAAATATTATAAGTGATGTTTGTTGAAATATCAGAAAATATTTTTGGCATACTTTGGGGAAAAAAGCAAACAC-AAACCAAAACAATTTACCTATTT-ACCTTCTCGTGAACTTATAAAATAAAatat
i calJac3.chr4             C 0 I 40357
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1667034 53839 -   2232465 I

a score=8440861.000000
s hg38.chr6_GL000254v2_alt    318280 1493 +   4827813 TTTAAGCCTTATTTTCCCCaaaccgtatatgattctctcaatagttgcagaaaaatcttctgataaaatccaacacctcttcatgtt-aaaaccctcaataaactaggtatccaaagaacatacttcaaaataataaaagccatttatttcagtcccacagccaacatcataccaaataggtaaaagctggaagcattccctttaagaactggaataagacaagaattctgacactactcttattcaacgtagtactgaaaatcctagccaaataaatcaggcaagagagagaaataaaaagcatccagataggaaaagagg-agtcaaattatgctatgattctatgactagaaaaccccaaagactctgccaaaaggcttctagacctgataaaacaacttaagtcaagtttgaagatacaaaatcaatgta-aaaaatcaatagcatttctatacaccaataatgttcaagctgagagccaaatcaagaatgtaattccctttaaa----atacacacacacacacacacacacacacacacacacacacacac--acacacaaaatctaggaatacttctaaccaaggaagtgaaagatttccacaaaaa-gaactacaaagcactgctgaaagaaatcatagatgacacaaacaaatggaaaaaccttccatgcttatggattggaagaatcaacaacataaacaaaatgtctaaattttaccgcctaaagcaatctacagattcaacactattcctattaaattaccaacgtcattttacacagaactagaaaaaatgattctaaaattacacggaacc--aaaaaagagcccaaatagccataacaatcctaagcaaaaagagcaaaactggaagcatcacattactggacttcaaactatgctacaagtctacagtaatcaaaacagcaaggtactggcacaaaaataggcacctagaccaatggaacagaataaagaacccagaaataaagcag-catacctacaaccaactgatcttgaacaaagtcgacaaaaataagtaatgcagaaaggactccctattccataaatggtcctaggaaaactggctaactatattcagaaggatgaaacttaacccttaccaagcaccata-tacaaaaattaattcaagaaagattaaagacttaaatgtaaagccccaaactataaaaatcctgggg--aaaactcagaaatacctttttggacattggccttggcaaagaacttatgaccaagtcctcaaaagcaattgcaacacacaaaaaattgacaaatgggacctaattaaaccaaagagcttctgcacagcaaaagtacctatcaacagaataaacagacatcttacagaatgggagaaaatatttgcaaactatgcatctgacaaaggactaatatccagaatctataaggaacctaaacaaatcaacaagagaaaaacaaataaccccattaaagaatgggcaaagaacatgaatg
s panTro5.chr6              29293320 1479 + 175400573 TTTAAGCCTTATTTTCCCCaaaccg--tatgattctttcaatagttgcagaaaaatcttctgataaaatccaacacctcttcatgtt-aaaaccctcaataaactaggtatccaaagaacatacttcaaaataataaaagccatttatttcagtcccacagccaacatcataccgaataggtaaaagctggaagcattccctttaagaactggaataagacaagaattctgacactactcttattcaacatagtactgaaaatcctagccaaataaatcaggcaagagagagaaataaaaagcatccagataggaaaagagg-agtcaaattatgctatgattctatgactagaaaaccccaaagactctgccaaaaggcttctagacctgataaaacaacttaagtcaagtttgaagatacaaaatcaatgta-aaaaatcaatagcatttctatacaccaataatgttcaagctgagagccaaatcaagaatgtaattccctttaaa----atacacacacacacaaacacacacacacacacacacac----------------aatctaggaatacttctaaccaaggaagtgaaagatttccacaaaaa-gaactacaaagcactgctgaaagaaatcatagatgacacaaacaaatggaaaaaccttccatgctcatggattggaagaatcaacaacataaacaaaatgtctaaattttaccgcctaaagcaatctacagattcaacactattcctattaaattaccaatgtcattttacacagaactagaaaaaatgattctaaaattacacggaacc--aaaaaagagcccaaatagccataacaatcctaagcaaaaagagcaaaactggaggcatcacattactggacttcaaactatactacaagtctacagtaatcaaaacagcaaggtactggcacaaaaataggcacctagaccaatggaacagaataaagaacccagaaataaagcag-catacctacaaccaactaatcttgaacaaagtcgacaaaaataagtaatgcagaaaggactccctattccataaatggtcctaggaaaactggctaactatattcagaaggatgaaacttaacccttaccaagcaccata-tacaaaaattaattcaagaaagattaaagacttaaatgtaaagccccaaactataaaaatcctggggaaaaaactcagaaataccattttggacattggccttggcaaagaacttatgaccaagtcctcaaaagcaattgcaacacacaaaaaattgacaaatgggacctaattaaaccaaagagcttctgcacagcaaaagtacctatcaacagaataaacagacatcttacagaatgggggaaaatatttgcaaactatgcatctgacaaaggactaatatccagaatctataaggaacctaaacaaatcaacaagagaaaaacaaataaccccattaaagaatgggcaaagaacatgaatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29539219 1484 + 173848474 TTTAAGCCTTATTTTCCCCaaaccg--tatgattctttcaatagttgcagaaaaatcttctgataaaatccaacacctcttcatgtt-aaaaccctcaataaactaggtatccaaagaacatacttcaaaataataaaagccatttatttcagtcccacagccaacatcataccgaataggtaaaagctggaagcattccctttaagaactggaataagacaagaattctgacactactcttattcaacatagtactgaaaatcctagccaaataaatcaggcaagagagagaaataaaaagcatccagataggaaaagagg-agtcaaattatgctatgattctatgactagaaaaccccaaagactctgccaaaaggcttctagacctgataaaacaacttaagtcaagtttgaagatacaaaatcaatgta-aaaaatcaatagcatttctatacaccaataatgttcaagctgagagccaaatcaagaatgtaattccctttaaa----atacacacacacacacacacacacacacacacacacacacacac----------aatctaggaatacttctaaccaaggaagtgaaagatttccacaaaaa-gaactacaaagcactgctgaaagaaatcatagatgacacaaacaaatggaaaaaccttccatgctcatggattggaagaatcaacaacataaacaaaatgtctaaattttaccgcctaaagcaatctacagattcaacactattcctattaaattaccaatgtcattttacacagaactagaaaaaatgattctaaaattacacggaacc--aaaaaagagcccaaatagccataacaatcctaagcaaaaagagcaaaactggaggcatcacattactggacttcaaactatactacaagtctacagtaatcaaaacagcaaggtactggcacaaaaataggcacctagaccaatggaacagaataaagaacccagaaataaagcag-catacctacaaccaactaatcttgaacaaagtcgacaaaaataagtaatgcagaaaggact-cctattccataaatggtcctaggaaaactggctaactatattcagaaggatgaaacttaacccttaccaagcaccata-tacaaaaattaattcaagaaagattaaagacttaaatgtaaagccccaaactataaaaatcctggggaaaaaactcagaaatacccttttggacattggccttggcaaagaacttatgaccaagtcctcaaaagcaattgcaacacacaaaaaattgacaaatgggacctaattaaaccaaagagcttctgcacagcaaaagtacctatcaacagaataaacagacatcttacagaatgggagaaaatatttgcaaactatgcatctgacaaaggactaatatccagaatctataaggaacctaaacaaatcaacaagagaaaaacaaataaccccattaaagaatgggcaaagaacatgaatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5336541 1491 +   6154872 TTTAAGCCTTATTTTCCCCaaaccg--tatgattctctcaatagttgcagaaaaatcttctgataaaatccaacacctcttcatgtt-aaaaccctcaataaactaggtatccaaagaacatacttcaaaataataaaagccatttatttcagtcccacagccaacatcataccgaataggtaaaagctggaagcattccctttaagaactgcaataagacaagaattctgacactactcttattcaacatagtactgaaaatcctagccaaataaatcaggcaagagagagaaataaaaagcatccagataggaaaagagg-agtcaaattatgctatgattctatgactagaaaaccccaaagactctgccaaaaggcttctagacctgataaaacaacttaagtcaagtttgaagatacaaaatcaatgta-aaaaatcaatagcatttctatacaccaataatgttcaagctgagagccaaatcaagaatgtaattccctttaaa----atacacacacacacacacacacatacacacacacacacacacacacacacacacaatctaggaatacttctaaccaaggaagtgaaatatctccacaaaaa-gaactacaaagcactgctgaaagaaatcatagatgacacaaacaaatggaaaaaccttccatgctcatggattggaagaatcaacaacataaacaaaatgtctaaattttaccgtctaaaacaatctacagattcaacactattcctattaaattaccaatgtcattttacacagaactagaaaaaatgattctaaaattacacggaacc--aaaaaagagcccaaatagccataacaatcccaagcaaaaagagcaaaactggaggcatcacattaccggacttcaaactatactacaagtctacagtaatcaaaacagcaaggtactggcacaaaaataggcacctagaccaatggaacagaataaagaacccagaaataaagcag-catacctacaaccaactgatcttgaacaaagtcgacaaaaataagtaatgcagaaaggactccctattccataaatggtcctaggaaaattggctaactatattcagaaggatgaaacttaacccttaccaagcaccatattacaaaaattaattcaagaaagattaaagacttaaatgtaaagccccaaactataaaaatcttggga-aaaaactcagaaatgcccttttggacattggccttggcaaagaacttatgaccaagtcctcaaaagcaattgcaacacacaaaaaattgacaaatgggacctaattaaaccaaagagcttctgcacagcaaaagtacctatcaacagaataaacagacatcttacagaatgggaaaaaatatttgcaaactatgcatctgac----gactaatatccagaatctataaggaacctaaacaaatcaacaagagaaaaacaaataaccccattaaagaatgggcaaagaacatgaatg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74349409 1454 + 122973662 TTTAAGCCTTGTTTTCCCCaaaccg--tatgattctctcaatagttgcagaaaaatcttttgataaaatccaacacctcttcatgttaaaaaccctcaataaactaggtatccaaagaacatacttcaaaataataaaagccatttatttcactcccacagccaacatcataccaaataggtaaaagctggaagcattccctttaagaagtggaataagacaagaattctgacactactgttattcaacatagtactggaaatcctagccaaataaatcaggcaagagagag----aaaaagcatccagataggaaaagaggaagtcaaattatgctatgattctatgactagaaaaccccaaaga--ctgccaaaaggcttctagacctgctaaaacaacttaagtaaagtttgaagatacaaaatcagtgta-aaaaatcgatagcatttctatacaccaataacgttcaagctgagagccaactcaagaatgtaattccctttaaa----atacacacacacacac--------------------------------------aacctaggaatacttctaaccaaggaagtgaaagatctccacaaaaaggaactacaaagcactgctgaaagaaatcatagatgacacaaacaaatggaaaaaccttccatgctcatggattggaagaatcaacaacataaattaaatgtctaaattttaccacctaatccagtctacagattcaacactattcctattaaattaccaatgtcattttgcacagaactagaaaaaatgattctaaaattacacagaacc--aaaaaagagcccaaatagccgtaacaatcttaagcaaaaagaacaaaactggaggcatcacattactggacttcaaactatactacaagtctacagtaatcaaaacagcaaggtactggtacagaaataggcacctagaccaatggaacagaataaagaacccagaaataaagcag-catacctacaactaactgatcttgaacaaagttgacaaaaataagcaatgcacaaaggactccctattccataaatggtcctaggaaaactggctaagtatattcagaaggatgaaacttaacccttaccaagcaccata-cacaaaaattaattcaagaaagattaaagacttaaatgtaaagcttcaaactataaaaatcctgggacaaaaactcggaaatacccttttggacattggccttggcaaagaacttatgaccaagtcctcaaaagcaattgcaacacacaaaaagttgacaaatgggacgtaattaaaccaaagagcttctgcacagcaaaagtacctatcaacagaataaacagacaacttacagaatgggagaaaatatttgcaaactatgcatctgacaaaggactaatatccagaatctataaggaacctaaacaaatcaacaagagaaaaacaaataacccctttaaagaatgggcaaagaacatgaatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29505587 1482 + 172585720 TTTAAGCCTTATTTTCCCCaaactg--tatgattctctcaatagttgcagaaaaatcttttgataaaatccaacacattttcatgttaaaaaccctcaataaattatgtatccaaggaacatacttcaaaataataaaagccatttatttcagtcccacagccaacatcataccaaataggtaaaagctggaagcattccctttaagaactggaataagacaag-attctgacactactcttattcaacatagtactggaagtcctagccagataaatcaggcaagagagagaaataaaaagcattcagataggaaaagaggaagtcaaattatgctatgattctatgactagaaaaccccaaagactcttccaaaaggcttctagacctgataaaacaacttcagtaaagtttgaagatacaaaatcaatgtacaacaatcaatagcatttctatacatcaataacattcaagctgagagccaaatcaagaatgtaattccctttaaa----acacacacacacacacacacacacacacacacacacacac--------------aatctaggaatacttctaaccaaggaagtgaaagatctccacaaaaa-gaactacaaagcactgctgaaagaaatcatagatgacacaaacaaatggaaaaaccttccatgctcatggattggaagaatcgacaacataattaaaatgtttaaattttaccgcctacaccaatctacagattcaacactattcctaataaattaccaatgtcattttacacagaactagaaaaaacgattctaaaattatatgaaacc-aaaaaaagagcccaaatagctataacaatcctaagcaaaaagaacaaagctggaggcatcacattactggacttcaaactatactacaagtctacagtaatcaaaatagcaaggtact-gtacaaaaataggcacttagaccaacggaacggaataaagaatccagaaataaagcag-catacctacaaccaactgatcttgaacaaagtcgacaaaaataagtaatgcagaaaggactccctattccataaatggtgctaggaaaactggctaactatgttcagaaggatgaaacttaacccttaccaagcaccata-tgcaaaaattaattcaagaaagattaaatacttaaatgtaaagcctcaaactataaaaatcctggga-gaaaactcagaaatacccttctggacattggccttggcaaagaacttaagaccaagtcctcaaaagcaattgcaacacataaaaaattgtcaaatggaacctaattaaaccaaagagcttctgcacagcaaaagtacctatcaacagaataaacagacaacttacagaatgggagaaaatatttgcaaactatgcatctgacaaaggagtaatatccagaatctataaggaacctaaacaaatcaacaaaagaaaaacaaataaccccattaaagaacaggcaaagaacatgaaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29166703 1482 - 170955103 TTTAAGCCTTATTTTCCCCaaactg--tatgattctctcaatagttgcagaaaaatcttttgataaaatccaacacattttcatgttaaaaaccctcaataaattatgtatccaaggaacatacttcaaaataataaaagccatttatttcagtcccacagccaacatcataccaaataggtaaaagctggaagcattccctttaagaactggaataagacaag-attctgacactactcttattcaacatagtactggaagtcctagccagataaatcaggcaagagagagaaataaaaagcattcagataggaaaagaggaagtcaaattatgctatgattctatgactagaaaaccccaaagactcttccaaaaggcttctagacctgataaaacaacttcagtaaagtttgaagatacaaaatcaatgtacaacaatcaatagcatttctatacatcaataacattcaagctgagagccaaatcaagaatgtaattccctttaaa----acacacacacacacacacacacacacacacacacacacac--------------aatctaggaatacttctaaccaaggaagtgaaagatctccacaaaaa-gaactacaaagcactgctgaaagaaatcatagatgacacaaacaaatggaaaaaccttccatgctcatggattggaagaatcgacaacataattaaaatgtttaaattttaccacctacaccaatctacagattcaacactattcctaataaattaccaatgtcattttacacagaactagaaaaaacgattctaaaattatatgaaacc-aaaaaaagagcccaaatagctataacaatcctaagcaaaaagaacaaagctggaggcatcacattactggacttcaaactatactacaagtctacagtaatcaaaatagcaaggtact-gtacaaaaataggcacttagaccaacggaacggaataaagaatccagaaataaagcag-catacctacaaccaactgatcttgaacaaagtcgacaaaaataagtaatgcagaaaggactccctattccataaatggtgctaggaaaactggctaactatattcagaaggatgaaacttaacccttaccaagcaccata-tgcaaaaattaattcaagaaagattaaagacttaaatgtaaagcctcaaactataaaaatcctggga-gaaaactcagaaatacccttctggacattggccttggcaaagaacttatgaccaagtcctcaaaagcaattgcaacacataaaaaattgtcaaatggaacctaattaaaccaaagagcttctgcacagcaaaagtacctatcaacagaataaacagacaacttacagaatgggagaaaatatttgcaaactatgcatctgacaaaggagtaatatccagaatctataaggaacctaaacaaatcaacaaaagaaaaacaaataaccccattaaagaacaggcaaagaacatgaaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2159118 1483 -   2996164 TTTAAGCCTTATTTTCCCCaaactg--tatgattctctcaatagttgcagaaaaatcttttgataaaatccaacacattttcatgttaaaaaccctcaataaattatgtatccaaggaacatacttcaaaataataaaagccatttatttcagtcccacagccaacatcataccaaataggtaaaagctggaagcattccctttaagaactggaataagacaag-attctgacactactcttattcaacatagtactggaagtcctagccagataaatcaggcaagagagagaaataaaaagcattcagataggaaaagaggaagtcaaattatgctatgattctatgactagaaaaccccaaagactcttccaaaaggcttctagacctgataaaacaacttcagtaaagtttgaagatacaaaatcaatgtacaacaatcaatagcatttctatacatcaataacattcaagttgagagccaaatcaagaatgtaattccctttaaa----acaaacacacacacacacacacacacacacacacacacac--------------aatctaggaatacttctaaccaaggaagtgaaagatctccacaaaaa-gaactacaaagcactgctgaaagaaatcatagatgacacaaacaaatggaagaaccttccatgctcatggattggaagaatcgacaacataattaaaatgtttaaattttaccacctacaccaatctacagattcaacactattcctaataaattaccaatgtcattttacacagaactagaaaaaacgattctaaaattatatgaaacc-aaaaaaagagcccaaatagctataacaatcctaagcaaaaagaacaaagctggaggcatcacattactggacttcaaactatactacaagtctacagtaatcaaaatagcaaggtact-gtacaaaaataggcacttagaccaacggaacagaataaagaatccagaaataaagcagccatacctacaaccaactgatcttgaacaaagtcgacaaaaataagtaatgcagaaaggactccctattccataaatggtgctaggaaaactggctaactatattcagaaggatgaaacttaacccttaccaagcaccata-tgcaaaaattaattcaagaaagattaaagacttaaatgtaaagcctcaaactataaaaatcctggga-gaaaactcagaaatacccttctggacattggccttggcaaagaacttatgaccaagtcctcaaaagcaattgcaacacataaaaaattgtcaaatggaacctaattaaaccaaagagcttctgcacagcaaaagtacctatcaacagaataaacagacaacttacagaatgggagaaaatatttgcaaactatgcatctgacaaaggagtaatatccagaatctataaggaacctaaacaaatcaacaaaagaaaaacaaataaccccattaaagaacaggcaaagaacatgaaca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2039818 1477 -   2157725 TTTAAGCCTTATTTCCCCCaaactg--tatgattctctcaatagttgcagaaagaccttttgataaaatccaacacatcttcatgttaaaaaccctcaataaattatgtatccaaggaacatacttcaaaataataaaagccatttatttcagtcccacagccaacatcataccaaataggtaaaagctggaagcattccctttaagaactggaataagacaag-attctgacactactcttattcaacatagtactggaagtcctagccagataaatcaggcaagagagagaaataaaaagcattcagataggaaaagaggaagtcaaattatgttatgattctatgactagaaaaccccaaagactcttccaaaaggcttctagacctgataaaacaacttcagtaaagtttgaagatacaaaatcaatgtacaacaatcaatagcatttctatacatcaataacattcaagctgagagccaaatcaagaatgtaattccctttaaa----------acacacacacacacacacacacacacacacacaa--------------aatctaggaatacttctaaccaaggaagtgaaagatctccacaaaaa-gaactacaaagcactgctgaaagaaatcacagatgacacaaacaaatggaaaaaccttccatgctcatggattggaagaatcaacaacataattaaaatgtttaaattttaccacctaaagcaatctacagattcaacactattcctattaaattaccaatgtcattttacacagaactagaaaaaacgattctaaaattatatggaaccaaaaaaaagagcccaaatagctataacaatcctaagcaaaaagaacaaagctggaggcatcacattactggacttcaaactatactacaagtctacagtaatcaacacagcaaggtact-gtacaaaaataggcacttagaccaacagaacagaataaagaatccagaaataaagcag-catacctacaaccaactgatcttgaacaaagtcgacaaaaataagtaatgcagaaaggactccctattccataaatggtgctaggaaaactggctaactatattcagaaggatgaaacttaacccttaccaagcaccata-tgcaaaaattaattcaagaaagattaaagacttaaatgtaaagcctcaaactataaaaatcctggga-gaaaactcagaaatacccttctggacattggcgttggcaaagaacttatgaccaagtcctcaaaagcaattgcaacacataaaaaatggacaaatggaacctaattaaaccaaagagcttctgcacagcaaaagtacctatcaacagaataaacagacaacttacagaatgggagaaaatatttgcaaactatgcatctcacaaaggagtaatatccagaatctataaggaacctaaacaaatcaacaagagaaaaacaaataaccccattaaagaacaggcaaagaacatgaaca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28470405 1486 -  71996105 TTTAAGCCTTATTTTCCCCaaactg--tatgattctctcaatagttgcagaaaaatcttttgataaaatccaacacatcttcatgttaaaaaccctcaataaattatgtatccaaggaacatacttcaaaataataaaagccatttatttcagtcccacagccaacatcataccaaataggtaaaagctggaagcattccctttaagaactggaataagacaag-attctgacactactcttattcaacatagtactggaagtcctagctagataaatcaggcaagagagagaaataaaaagcattcagataggaaaagaggaagtcaaattatgctatgattctatgactagaaaaccccaaagactcttccaaaaggcttctagaccggataaaacaacttcagtaaagtttgaagatacaaaatcaatgtacaacaatcaatagcatttctatacatcaataacattcaagctgagagccaaatcaagaatgtaattccctttaaaacacacacacacacacacacacacacacacacacacacacacac--------------aatctaggaatacttctaaccaaggaagtgaaagatctccacaaaaa-gaactacaaagcactgctgaaagaaatcatagatgacacaaacaaatggaaaaaccttccatgctcatggattggaagaatcgacaacataattaaaatgtttaaattttaccacctaaagcaatctacagattcaacactattcctattaaattaccaatgtcattttacacagaactagaaaaaacgattctaaaattatatggagcc-aaaaaaagagcccaaatagctataacaatcctaagtaaaaagaacaaagctggaggcatcacattactggacttcaaactatactacaagtctacagtaatcaaaatagcaaggtact-gtacaaaaataggcacttagaccaacggaacagaataaagaatccagaaataaagcag-catacctacaaccaactgatcttgaacaaagtcgacaaaaataagtaatgcagaaaggactccctattccataagtggtgctaggaaaactggctaactatattcagaaggatgaaacttaacccttactaagcaccata-tgcaaaaattaattcaagaaagattaaagacttaaatgtaaagcctcaaactataaaaatcctggga-gaaaactcagaaatacccttctggacattggccttggcaaagaacttatgaccaagtcctcaaaagcaattgcaacacataaaaaattgataaatggaacctaattaaaccaaagagcttctgcacagcaaaagtacgtatcaacagaataaacagacaacttacagaatgggagaaaatatttgcaaactatgcatctgacgaaggagtaatatccagaatctataaggaacctaaacaaatcaacaagagaaaaacaaataaccccattaaagaacaggcaaagaacatgaaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2177689 1479 +   2316924 TTTAAGCCTTATTTTCCCCaaactg--tatgattctctcaatagttgcagaaaaaccttttgataaaatccaacacatcttcatgttaaaaaccctcaataaattatgtatccaaggaacatacttcaaaataataaaagccatttatttcagtcccacagccaacatcataccaaataggtaaaagctggaagcattccctttaagaactggaataagacaag-attctgacactactcttattcaacatagtactggaagtcctagccagataaatcaggcaagagagagaaataaaaagcattcagataggaaaagaggaagtcaaattatgctatgattctatgactagaaaaccccaaagactcttccaaaaggcttctagacctgataaaacaacttcagtaaagtttgaagatacaaaatcaatgtacaacaatcaatagcatttctatacatcaataacattcaagctgagagccaaatcaagaatgtaattccctttaaa--------acacacacacacacacacacacacacacacacacaa--------------aatctaggaatacttctaaccaaggaagtgaacgatctccacaaaaa-gaactacaaagcactgctgaaagaaatcacagatgacacaaacaaatggaaaaaccttccatgctcatggattggaagaatcaacaacataattaaaatgtttaaattttaccacctaaagcaatctacagtttcaacactattcctattaaattaccaatgccattttacacagaactagaaaaaacgattctaaaattatgtggaaccaaaaaaaagagaccaaatagctataacaatcctaagcaaaaagaacaaagctggaggcaccacattactggacttcaaactatactacaagtctacagtaatcaaaacagcaaggtact-gtacaaaaataggcacttagaccaacagaacggaataaagaatccagaaataaagcag-catacctacaaccaactgatcttgaacaaagtcaacaaaaataagtaatgcagaaaggactccctattccataaatggtgctaggaaaactggctaactatattcagagggatgaaacttaacccttaccaagcaccata-tgcaaaaattaattcaagaaagattaaagacttaaatgtaaagcctcaaactataaaaatcctggga-gaaaactcagaaatacccttctggacattggccttggcaaagaacttatgaccaagtcctcaaaagcaattgcaacacataaaaaattgacaaatggaacctaattaaaccaaagagcttctgcacagcaacagtacctatcaacagaataaacagacaacttacagaatgggagaaaatatttgcaaactatgcatctgacaaaggagtaatatccagaatctataaggaacctaaacaaattaacaagagaaaaacaaataaccccattaaagaacaggcaaagaacatgaaca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2043609 1465 -   3067355 TTTAAGCCTTATTTTCCCCaaactg--tatgattctctcaatagttgcagaaaaatcttttgataaaatccaacacatcttcatgttaaaaatcctcaataagttatgtatccaaggaacatacttcaaaataataaaagccatttatttcagtcccacagccaacatcataccaaataggtaaaagctggaagcattccctttaagaactggaataagacaagaattctgacactactcttcttcaacatagtactggaagtcctagtcagataaatcaggcaagagagagaaataaaaagcatccagataggaaaagaggaagtcaaattatgctatgattctatgactagaaaaccccaaagactcttccaaaaggcttctagacctgataaaacaacttcagtaaagtttgaagatacaaaatcaatgtacaacaatcaatagcatttctatacatcaataacattcaagctgagagccaaatcaagaatgtaattccctttaaa----------------------acaaacacacacacacacacac--------------aatctaggaatacttctaaccaaggaagtgaaagatcttcacaaaaa-aaactacaaagcactgctgaaagaaatcatagatgacacaaagaaatggaaaaaccttccatgctcatggattggaagaaacaacaacataattaaaatgtttaaattttaccacctaaagcaatctacagattcaacagtattcctattaaattaccaatgtcattttacacagaactagaaaaaacgattctaaaattatatggaacc-aaaaaaagagcccaaatagctataacaatcctaagcaaaaagaacaaagctggaggcctcacattactggacttcaaactatactgcaagtctacagtaatcaaaacagcaaggtact-gtacaaaaataggcacttagaccaatggaacagaataaagaacccagaaatgaagcag-catacctacacccaactgatcttgaacaaagtcgacaaaaataagtaatgcagaaaggactccctattccataaatggtgctaggaaacctggctaactatattcagaaggatgaaacttaacccttaccaagcaccata-tgctaaaattaattcaagaaagattaaagacttaaatgtaaagcctcaaactataaaaattctggga-gaaaactcagaaatacccttctggacattggccttggcaaagaacttatgaccaagtcctcaaaagcaattgcaacacataaaaaattgacaaatggaacctaattaaaccaaagagcttctgcacagcaaaagtacctatcaacagaataaacacataacttacagaatgggagaaaatatttgcaaactatgcatctgacaaaggagtaatatccggaatctataaggaatctaaacaaatcaacaagagaaaaacaaataaccccattaaagaacgggcaaagaacatgaaca
i colAng1.NW_012115566v1   C 0 I 304
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1667034 53839 -   2232465 I
e calJac3.chr4             171559582 40357 - 171630274 I

a score=11239021.000000
s hg38.chr6_GL000254v2_alt    319773 2019 +   4827813 gacaattctcaaaagaagacataaaagcagctaacaaacatat--aaaaaatgctcgaacactaatcattagagaaatgccactcaaaaccgcaatgagataccatcttgcactagtctgaatggctattactaaaaagt-aaaataatgacagatattgatgaggctgcagagaaaatggaacacttttatactgctggtgggaatgtagattagttcagccact-atggaaagtagtttgggaatttctcaaagaactgaaaatagaattaccattcaacctagcaattccatcactgggtatgtgcctccca--cccaaataaattgttctacccaaaagacacatgcattcacatgttcattgcagcactattcacaattgcaaagacatggaatcaagctaggtgcccattaatggtggattggataaagaaaatgtggtacatatacagcatggaatgctacacagccataaaagagaacgaaataatgtcctttgaagcaatatggatgcagctggaggccattatccttagcaaattaatgcagaaatagaaaaccgaacaccacatcttctcacttgatttaaaatttaaggagataaatcctgggtacatacagacataaagatggaaacagtagacactagggattccaaaaggaaggagaggaggagaggagcaaggactgaaaaatttcctattgtatactatattcactgtctgggtgacaggattaatataagcccaaacctcagcatcacacaatatacccttgtaataaacctgcccatgtatccccctgaatctaaactaaaaatagaaa-tttaaaaaaCCCCTTTTTCATAGTAATCATAAAATATACACTTATGCAATTTATGAAAATAATATAGTTTTACCTCTGTTCTTTTCACTGcagctttgtgaaggtataattaacaagtaaaaattgcatacacttactatgtgtatgatgttttgacatatgtatatattgtgaagtgattaccacaaaccagctaattaacctatccatcagttgacata-ttttttcttgttttgtggtgagaatatttaagatgtactctcttaacaaatttcaaatattaaatactgtattgttaactatattcaccatgctgcatattaaatccccagaacttgttcgccttataactgaaagcttgtaccttctgaccaacatctccctattttcccctcccccagcttttggaaaccaccattctaattctattctctgtttctgtgaattcagctttttaagatttcatgtataagtgagttcatatcgtatttgtctttctctgattcatgtattttactaagcataatgccaacaaggttgatccatgttgttgcaagtggcagaatttccttctttttgatggatgcttggtttgtttccaagtgttggctaatgtgaatgatgctacattgaacacaagagtgcatatatctctttgacatactattttcgtttcctttgggtatatacccagcagtgggattgctggataagatggtagctctagttttgatttttgaggaacctccatactgttttctaaaatggctgttccaatttacattcccaccagtagtgcataaggattccctttctttctgaatccttgccaatacttgttatctc--gtctcgataatagccatcctaac--atgttggctgatctcattggggttttaattttcatttctctcatgaatagtgctgttgagcattatcattatttcacgtatctgttggccatatgtatgtcttctattgagaaatgtcagctcaggtcctttggccgtttaaaaatcaatttattgtattatttttgctatggagttgtttgaattccttgt-attttttg-gatattaactccttatcagatttgtgagttacgtaagataatggttcaattttattattttgcatatagatac-taagttttcccagcaccatttattgaatcaagtatcctttctcctgtatattctt
s panTro5.chr6              29294799 2019 + 175400573 gacaattctcaaaagaagacataaaagcagctaacaaacatat--aaaaaatgctcaaacactaatcattagagaaatgccactcaaaaccacaatgagataccatcttgcactagtctgaatggctattactaaaaagt-aaaataatgacagatattgatgaggctgcagagaaaatggaacacttttacactgctggtgggaatgtagattagttcagccact-atggaaagtagtttgggaatttctcaaagaactgaaaacagaattaccattcaacctagcaattccatcactgggtatgtgcctccca--cccaaataaattgttctacccaaaagacacatgcattcacatgttcattgcagcactattcacaattgcaaagacatggaatcaagctaggtgtccattaatggtggattggataaagaaaatgtggtacatatacaacatggaatgctacacagccataaaagagaacgaaataatgtcctttgaagcaatatggatgcagctggaggccattatccttagcaaattaatgcagaaatagaaaaccgaatatcacatcttctcacttgatttaaagtttaaggagctaaatcctgggtacatacagacataaagatggaaacagtagacactagggattccaaaaggaaggagaggaggagaggagcaaggactgaaaaatttcctattgtatactatattcactgtctgggtgacaggattaatataagcccaaacctcagcatcacacaatatacccttgtaataaacctgcccatgtatccccctgaatctaaactaaaaatagaaa-tttaaaaaaCCCCCTTTTCATAGTAATCATAAAATATACACTTATGCAATTTATGAAAATAATATAGTTTTACCTCTGTTCTTTTCACTGcagctttgtggaggtataattaacaagtaaaaattgcatacacttactatgtatatgatgttttgacatatgtatatattgtgaagtgattactacaaaccagctaattaacctatccatcagctgacata-ttttttcttgttttgtggtgagaatatttaagatctactctcttaacaaatttcaaatattaaatactgtattgttaactatattcaccatgctgcatattaaatccccagaacttgttcgccttataactgaaagcttgtaccttctgaccaacatctccctgttttcccctcccccagcttttggaaaccaccattctaattctattctctgtttctgtgaattcagctttttaagatttcatgtataagtgagttcatatggtatttgtctttctctgcttcatgtattttactaagcataatgccaacaaggttgatccatgttgttgcaagtggcagaatttccttctttttgatggatgcttggtttgtttccaagtgttggctaatgtgaatgatgctacattgaacacaagagtgcatatatctctttgacatactattttcgtttcctttgggtatatacccagcagtgggattgctggataagatggtagctctagttttgatttttgaggaacctccatactgttttctaaaatggctgttccaatttacattcccaccagtcgtgcataaggattccctttctttctgaatccttaccaatacttgttatctc--gtctcaataatagccatcctaac--atgttggctgatctcattggggttttaattttcatttctctcatgaatagtgctgttgagcattatcattatttcacatatctgttggccatatgtatgtcttctattgagaaatgtcagctcaggtcctttggccatttacaaatcgatttattgtattatttttgctatggagttgtttgaattccttgt-attttttg-gatattaactccttatcagatttgtgagttacgtaagataatggttcaattttattattttgcatatagatac-taagttttcccagcaccatttattgaatcaagtatcctttctcctgtgtattctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29540703 2017 + 173848474 gacaattctcaaaag--gacataaaagcagctaacaaacatat--aaaaaatgctcaaacactaatcattagagaaatgccactcaaaaccacaatgagataccttcttgcactagtctgaatggctattactaaaaagt-aaaataatgacagatattgatgaggctgccgagaaaacggaacacttttacactgctggtgggaatgtagattagttcagccact-gtggaaagtagtttgggaatttctcaaagaactgaaaatagaattaccattcaacctagcaattccatcactgggtatgtgcctccca--cccaaataaattgttctacccaaaagacacatgcattcacatgttcattgcagcactattcacaattgcaaagacatggaatcaagctaggtgcccattaatggtggattggataaagaaaatgtggtacatatacaacatggaatgctacacagccataaaagagaacgaaataatgtcctttgaagcaatatggatgcagctggaggccattatccttagcaaattaatgcagaaatagaaaaccgaatatcacatcttctcacttgatttaaagtttaaggagctaaatcctgggtacatacagacataaagatggaaacagtagacactagggattccaaaaggaaggagaggaggagaggagcaaggactgaaaaatttcctattgtatactatattcactgtctgggtgacaggattaatataagcccaaacctcagcatcacacaatatacccttgtaataaacctgcccatgtatccccctgaatctaaactaaaaatagaaa-tttaaaaaaCCCCCTTTTCATAGTAATCATAAAATATACACTTATGCAATTTATGAAAATAATATAGTTTTACCTCTGTTCTTTTCACCGcagctttgtgaaggtataattaacaagtaaaaattgcatacacttactatgtatatgatgttttgacatatgtatatattgtgaagtgattactacaaaccagctaattaacctatccatcagctgacata-ttttttcttgttttgtggtgagaatatttgagatctactctcttaacaaatttcaaatattaaatactgtattgttaactatattcaccatgctgcatattaaatccccagaacttgttcgccttataactgaaagcttgtaccttctgaccaacatctccctgttttcccctcccccagcttttggaaaccaccattctaattctattctctgtttctgtgaattcagctttttaagatttcatgtataagtgagttcatatggtatttgtctttttctgcttcatgtattttactaagcataatgccaacaaggttgatccatgttgttgcaagtggcagaatttccttctttttgatggatgcttggtttgtttccaagtgttggctaatgtgaatgatgctacgttgaacacaagagtgcatatatctctttgacatactattttcgtttcctttgggtatatacccagcagtgggattgctggataagatggtagctctagttttgatttttgaggaacctccatactgttttctaaaatggctgttccaatttacattcccaccagtagtgcataaggattccctttctttctgaatccttaccaatacttgttatctc--gtctcaataatagccatcctaac--atgttggctgatctcattggggttttaattttcatttctctcatgaatagtgctgttgagcattatcattatttcacatatctgttggccatatgtatgtcttctattgagaaatgtcagctcaggtcctttggccatttacaaatcaatttattgtattatttttgctatggagttgtttgaattccttgt-attttttg-gatattaactccttatcagatttgtgagttacgtaagataatggttcaattttattattttgcatatagatac-taagttttcccagcaccatttattgaatcaagtatcctttctcctgtgtattctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5338032 2016 +   6154872 gacaattctcaaaagaagacataaaagcagctaacaaacatat--aaaaaatgctcaaacactaatcattagagaaatgccactcaaaaccacaatgagataccatcttgcactagtctgaatggctattactaaaaagt-aaaataatgacagatattgatgaggctgcagagaaaatggaacacttttacactgctggtgggaatgtagattagttcagccact-atggaaagtagtttgggaatttctcaaagaactgaaaatagaattaccattcaacctagcaattccatcactgggtatgtgcctccca--cccaaataaattgttctacctaaaagacacatgcattcacatgttcattgcagcactgttcacaattgcaaagacatggaatcaagctaggtgcccattaatggtggattggataaagaaaatgtggtacatacacaacatggaatgctacacagccataaaagagaacgaaataatgtcctttgaagcaatatggatgcagctggaggccattatccttagcaaattaatgcagaaatagaaaaccgaatatcacatcttctcacttgatttaaagtttaaggagctaaatcctgggtacatacagacataaagatggaaacagtagacactagggattccaaaaggaagga---gaggagaggagcaaggactgaaaaatttcctattgtatactatattcactgtctgggtgacagggttaatataagcccaaacctcagcatcacacactatacccttgtaataaacctgcccatgtatccccctgaatctaaactaaaaatagaaa-tttaaaaaaCCCCTTTTTCATAGTAATCATAAAATATACACTTATGCAATTTATGAAAATAATATAGTTTTACCTCTGTTCTTTTCACCccagctttgtgaaggtataattaacaagtaaaaattgcatacacttactatgtatatgatgttttgacatatgtatatattgtgaagtgattaccacaaaccagctaattaacctatccatcagctgacatatttttttcttgttttgtggtgagaatatttaagatctacactcttaacaaatttcaaatattaaatactgtattgttaactatattcaccatgctgcatattaaatccccagaacttgttcgccttgtaactgaaagcttgtaccttctgaccaacatctccctattttcccct-ccccagcttttggaaaccaccattctaattctattctctgtttctgtgaattcagctttttaagatttcatgtataagtgagttcatatggtatttgtctttctctgattcatgtattttactaagcataatgccaacaaggttgatccatgttgttgcaagtggcagtatttccttctttttgatggatgcttggtttgtttccaagtattggctaatgtgaatgatgctacattgaacacaagagtgcatgtatctctttgacatactattttcgtttcctttgggtatatacccagcagtgggattgctggataagatggtagctctagttttgatttttgaggaacctccatactgttttctaaaatagctgttccaatttacattcccaccagtagtgcataaggattccctttctttctgaatccttgccaatacttgttatctc--gtctcgataatagccatcctaac--atgttggctgatctcattggggttttaattttcatttctctcatgaatagtgctgttgagcattatcattatttcacatatctgttggccatatatatgtcttccattgagaaatgtcagctcaggtcctttggccatttaaaaatcaatttattgtattatttttgctatggagttgtttgaattccttgt-attttttg-gatattaactccttatcagatttgtgagttatgtaagataatggttcaattttattattttgcatatagatac-taagttttcccagcaccatttattgaatcaagtatcctttctcctgtgtattctt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74350863 2006 + 122973662 gacaattctcaaaagaggacataaaagcagctaacaaacatat-aaaaaaatgttcaaacactaatcattagagaaatgccactcaaaaccacaatgagataccatcatgcaccagtctgaatggctattactaaaaaat-aaaaaaatgacagttattgatgaggctgcacagaaaatggaacacttatacactgctggtgggaatgtaaattagttcagccactaagggaaagtagtttgggaatttctcaaagaactgaaaatagaattaccattcaacctagcaattccatcactgggtatgtgcctccca---ccaaataaattgttctacccaaaagacacatgcacttgcatgttcattgcagcactattcacaattgcaaagacatggaatcaagctaggtccccattaatggtggattggataaagaaaatgtggtacatatacaacatggaatgctacacagccataaaagagaacgaaataatgtcatttgaagcaatatggatgcagctggaggccattatccttagcaaattaatgcagaaatagaaaaccgaatatcacatcttctcacttgatttaaagtttaaggagctaaatcttgggtacatacagacataaagatggaaacagtagacactagggattccaaaaggaaggagaggaggagaggagcaaggactgaaaaatctcctattgtgtactatattcattgtctggg-gacaggcttaatataagcccaaacctcagcatcacacaatatacccttgtaataaacctgcccatgtatccccctgaatctaaactaaaaatATAAATTTTAAAAAACCGTTTTTTCATAGTAATCATAAAATATACACTTATGCAATTTATGAAAATAATATAGTTTTACCTTTGCTCTTCTCACCccacctttgtgaaggtataattaacaagtaaaaattgcatacacttactgtgtat---atgttttgacataggtatatattgtgaagtgattaccacaaaccagctaattaacctatccatcagctgacata-ttttttcttgttttgtagtgagactatttaagatctacactctaaacaaatttcaaatattaaatactgtatcattaactatattcaccatgctgcatattaaatccccagaacttgttcaccttataactgaaagcttgtaccttctgaccaacatatccctattttcccctcccccagctcttggaaaccaccattctaattctattctctgtttctgtgaatttagctttttaagattttatgtataagtgcgttcatatggtatttgtctttctctgattcacttattttaccaaccataatgccaacaa-gttgatccatgttgttggaagtggcagaatttc---cttttggatggatgcttggtttgtttccaagtgttgggtaatgcgaatgatgctacgttgaatataagagtgcatatatctctttgacttattatttttgtttcctttgggtatatacccagcagtgggattgctggataagatggtagctctggttttgatttttgaggaacctgtatactgttttctaaaatggctgttccaatttacattcccaccagtagtgcataaggattccttttctttctgaatccttgccaatacttgttatctcttgtcttgataatagccatcctaac--atgttagctgatctcattgtggttttaattttcatttctctc---aatagtgctgttgag------cattatttcacatatctgttggccatatgtatgtcttctattgagaaatgtcagctcaggtcctttggccattcaaaaatcaatttattgtattatttttgctatggagttgtttgaattccttgt-attttttg-gatattaactccttatcagatttgtgagttatgtaagataatggttcaattttattattttgcatatagatac-taagttttcccagcaccatttattgaatcaactatcctttctcctgtgtattctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29507069 2012 + 172585720 gacaattcttaaaagaagacataaaagcagctaacaaatgtataaaaaaaatgctcaaacactaatcattagagaaatgccactcaaaaccacaatgagataccatcttgcaccagtcagaatggctattactaaaaggt-aaaaaaatgacagatattgatgaggctgcagagaaaat-gaacacttacatactgctggtagaaatgtaaattagttcagccact-atggaaagtagtttgggaatttctcgaagacctgaaaatagaattatcattcaacccagcaattccatcactgggtatgtgacccccgcccccagatatattgttctacccaaaatatacatgcactcgcatgttcattgcagcactattcacaattgcaaagacatggaatcaagctaggtgcccattaatggtggattggataaataaaatgtggtacatatacaacatggaatgctacacagccataaaagagaacaaaataatgtcctttgaagcaacatgggtgcagctggaggccattatccttagcaaattaatgcagaaatagaaaaccaaatatcacagcttctcactcgatttaaagtttaaggagctaaattttgggtacatacggacataaagatggaaacaaagaacactagggatttcaaaaggaaggagaggaggagaggagcaaggactgaaaaacttcctatcatgtactatattcactgtctgggtgacaggattaatataagcccaaacctcagcatcacacaatatacccttgtaataaacctgcccatatacccccctgaatctaaactaaaaatagaaa-ttaaaaaaaCCCCTTTTTCATAGTAATCATAAAATATACACTTAGGCAATTTATGAAAATAACGTAGTTTTACATTTGTTCTTTTCACCccagctttatgaagatataattaa----taaaaattgaatacacttactgtgtacatgatgttttgacatatgtatatattgtgaaatgattaccacaaaccagctaattaatctatccatcagctgagata-ttttttcttgttttgtggtgggaatatttaaaatctacactcttaacaaatttcaaatattaaatactgtattgttaactatattcaccatgctgcatattaaatcccgagaacttgtttgccttaaagctgaaagcttgtatctgctgaccaacatctccctatttttccctcccctagtttttggaaaccaccattctaattctat--tctgtttctgtgaattcaactttttaagatttcatgaataagtgagttcatatgctatttgtctttctctgattcatttattttactaagcataatgcccacaaggttgatccatgttattgcag--cacagaatttccttctttttgatggatgcttggtttgtttccaagtgttggttaatgtgaatgatgctacattgaacataagagtgcatatatctctttgacatactaatttcatttcttttgggtatatacccagaagtgggattgctggataagatggtagctctagttttgatttttgaggaacctccatactgttttctaaaatggctgttccaatttacattcccaccagtagtgcataaggattccctttctttctgaatccttcccaatgcttgttatctcttgtcttgataatagccatcctaacatatgttagctgatctcactgtggttttaattttcatttccgtcatgaatagtgctgttcag------cattatttcacatatctgttggccatatgtatgtcttctattgagaaatgtctgctcaggt-ctttggccatttaaaaatcaatttattgtattatttttgctatagagttgtttgaattccttgtggttttttg-gatattaactccttatcagatttgtgagttatgtaagataatggttccattttattcttttgcgtatagagac-taagttttcccagcacaatttattgaataaactatcctttctcctgtgttttctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29168185 2012 - 170955103 gacaattcttaaaagaagacataaaagcagctaacaaatgtataaaaaaaatgctcaaacactaatcattagagaaatgccactcaaaaccacaatgagataccatcttgcaccagtcagaatggctattactaaaaggt-aaaaaaatgacagatattgatgaggctgcagagaaaat-gaacacttacatactgctggtagaaatgtaaattagttcagccact-atggaaagtagtttgggaatttctcgaagacctgaaaatagaattatcattcaacccagcaattccatcactgggtatgtgacccccgcccccagatatattgttctacccaaaatatacatgcactcgcatgttcattgcagcactattcacaattgcaaagacatggaatcaagctaggtgcccattaatggtggattggataaataaaatgtggtacatatacaacatggaatgctacacagccataaaagagaacaaaataatgtcctttgaagcaacatgggtgcagctggaggccattatccttagcaaattaatgcagaaatagaaaaccaaatatcacagcttctcactcgatttaaagtttaaggagctaaattttgggtacatacggacataaagatggaaacaaagaacactagggatttcaaaaggaaggagaggaggagaggagcaaggactgaaaaacttcctatcatgtactatattcactgtctgggtgacaggattaatataagcccaaacctcagcatcacacaatatacccttgtaataaacctgcccatatactcccctgaatctaaactaaaaatagaaa-ttaaaaaaaCCCCTTTTTCATAGTAATCATAAAATATACACTTAGGCAATTTATGAAAATAACGTAGTTTTACATTTGTTCTTTTCACCccagctttatgaagatataattaa----taaaaattgaatacacttactgtgtacatgatgttttgacatatgtatatattgtgaaatgattaccacaaaccagctaattaatctatccatcagctgagata-ttttttcttgttttgtggtgggaatatttaaaatctacactcttaacaaatttcaaatattaaatactgtattgttaactatattcaccatgctgcatattaaatccccagaacttgtttgccttaaagctgaaagcttgtatctgctgaccaacatctccctatttttccctcccctagtttttggaaaccaccattctaattctat--tctgtttctgtgaattcaactttttaagatttcatgaataagtgagttcatatgctatttgtctttctctgattcatttattttactaagcataatgcccacaaggttgatccatgttattgcag--cacagaatttccttctttttgatggatgcttggtttgtttccaagtgttggttaatgtgaatgatgctacattgaacataagagtgcatatatctctttgacatactaatttcatttcttttgggtatatacccagaagtgggattgctggataagatggtagctctagttttgatttttgaggaacctccatactgttttctaaaatggctgttccaatttacattcccaccagtagtgcataaggattccctttctttctgaatccttcccaatgcttgttatctcttgtcttgataatagccatcctaacatatgttagctgatctcactgtggttttaattttcatttccgtcatgaatagtgctgttgag------cattatttcacatatctgttggccatatgtatgtcttctattgagaaatgtctgctcaggt-ctttggccatttaaaaatcaatttattgtattatttttgctatagagttgtttgaattccttgtggttttttg-gatattaactccttatcagatttgtgagttatgtaagataatggttccattttattcttttgcgtatagagac-taagttttcccagcacaatttattgaataaactatcctttctcctgtgttttctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2160601 2010 -   2996164 gacaattcttaaaagaagacataaaagcagctaacaaatgtat-aaaaaaatgctcaaacactaatcattagagaaatgccactcaaaaccacaatgagataccatcttgcaccagtcagaatggctattactaaaaggt-aaaaaaatgacagatattgatgaggctgcagagaaaat-gaacacttacatactgctggtagaaatgtaaattagttcagccact-atggaaagtagtttgggaatttctcgaagacctgaaaatagaattatcattcaacccagcaattccatcactgggtatgtgacccccgcccccagatatattgttctacccaaaatatacatgcactcgcatgttcattgcagcactattcacaattgcaaagacatggaatcaagctaggtgcccattaatggtggattggataaataaaatgtggtacatatacaacatggaatgctacacagccataaaagagaacaaaataatgtcctttgaagcaacatgggtgcagctggaggccattatccttagcaaattaatgcagaaatagaaaaccaaatatcacagcttctcactcgatttaaagtttaaggagctaaattttgggtacatacggacataaagatggaaacaaagaacactagggatttcaaaaggaaggagaggaggagaggagcaaggactgaaaaacttcctatcatgtactatattcactgtctgggtgacaggattaatataagcccaaacctcagcatcacacaatatacccttgtaataaacctgcccatatacccccctgaatctaaactaaaaatagaaa-ttaaaaaaaCCCCTTTTTCATAGTAATCATAAAATATACACTTAGGCAATTTATGAAAATAACGTAGTTTTACATTTGTTCTTTTCACCccagctttatgaagatataattaa----taaaaattgaatacacttactgtgtacatgatgttttgacatatgtatatattgtgaaatgattaccacaaaccagctaattaatctatccatcagctgagata-ttttttcttgttttgtggtgggaatatttaaaatctacactcttaacaaatttcaaatattaaatactgtattgttaactatattcaccatgctgcatattaaatcccgagaacttgtttgccttaaagctgaaagcttgtatctgctgaccaacatctccctatttttccctcccctagtttttggaaaccaccattctaattctat--tctgtttctgtgaattcaactttttaagatttcatgaataagtgagttcatatgctatttgtctttctctgattcatttattttactaagcataatgcccacaaggttgatccatgttattgcag--cacagaatttccttctttttgatggatgcttggtttgtttccaagtgttggttaatgtgaatgatgctacattgaacataagagtgcatatatctctttgacatactaatttcatttcttttgggtatatacccagaagtgggattgctggataagatggtagctctagttttgatttttgaggaacctccatactgttttctaaaatggctgttccaatttacattcccaccagtagtgcataaggattccctttctttctgaatccttcccaatgcttgttatctcttgtcttgataatagccatcctaacatatgttagctgatctcactgtggttttaattttcatttccgtcatgaatagtgctgttgag------cattatttcacatatctgttggccatatgtatgtcttctattgagaaatgtccgctcaggt-ctttggccatttaaaaatcaatttattgtattatttttgctatagagttgtttgaattccttgtgg-tttttg-gatattaactccttatcagatttgtgagttatgtaagataatggttccattttattcttttgcgtatagagac-taagttttcccagcacaatttattgaataaactatcctttctcctgtgtattctt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2041295 2005 -   2157725 gacaattcttaaaagaagacataaaagcagctaacaaatgtataaaaaaaatgctcaaacactaatcattagagaaatgccactcaaaaccacaatgagataccatcttgcaccagtcagaatggctattactaataggt-aaaaaaatgacagatattgatgaggctgcagagaaaat-gaacacttacatactgctggtaaaaatgtaaattagttcagccact-atggaaagtagtttgggaatttctcgaagacttgaaaatagaattatcattcaacccagcaattccatcactgggtatgtgccccccgcccccagataaatggttctacccaaaatatacatgcactcgcattttcattgcagcactattcacaattgcaaagacgtggaatcaagctaggtgcccattaatggtggattggataaataaaatgtggtatatatacaacatggaatgctacacagccataaaagagaacaaaataatgtcctttgaagcaacatgggtgcagctggaggccattatccttagcaaattaatgcagaaatagaaaaccaaatatcacagcttctcactcgatttaaagtttaaggagctaaattttgggtacatatggacataaagatggaaacaacgaacactagggatttcaaaaggaaggagaggaggagaggagcaaggactgaaaaacttcctatcatgtactatattcactgtctgggtgccaggattaatataagcccaaacctcagcatcacacaatatacccttgtaataaacctgcccatatacccccctgaatctaaactaaaaatagaaa-TTTTAAAAAACCCTTTTTCATAGTGATCTTAAAATATACACTTGGGCAATTTATGAAAATAATGTAGTTTTACATTTGTTTTTTTCACCccagctttatgaagatataattaa---gtaaaaattgaatacacttactgtgtacatgatgttttgacatatgtatatattgtgaaatgattaccacaaaccagctaattaatctatccatcagttgacata-ttttttcttgttttgtggtgggaatatttaaaatctacactcttaataaatttcaaattttaaatactgtattgttaactatattcaccatgctgcatattaaatccccagaacttgtttgccttaaagttgaaagcttgtatctggtgaccaacatctccctatttttccctcccctagtttttggaaaccaccattctaattctgttctctgtttctgtgaattcaactttttaagatttcatgaataagtgagttcctatgctatttgtttttctctgattcatttattttactaagcataatgcccacaaggttgatccatgttattgcag--cacagaatttccttctttttgatggatgcttggtttgtttccaagtgttggttaatgtgaatgatgctacattgaacataagagtgcatatatctctttgacatactaatttcatttcttttgggtatatacccagaagtgggattgctggataagatggtagctctagttttgatttttgaggaacctccatactgttttctaaaatggctgttccaatttacattcccaccagtagtgcataaggattccctttctttctgaatccttgccaatacttgttatctcttgtcttgataatatccatcctaacatatgttagctgatctcattgtggttttaattttcatttctgtcatgaatagtgctgttgag------cattatttcacatatctgttggccatatgtatgtcttctattgagaaatgtctgctcaggt-ctttggccatttaaaaatc-----------ttatttttgctatagagctgtttgaattccttgtggttttttgaaatattaactccttatcagatttgtgagttatgtaagataatggttccattttattcttttgc-tatagagacataagttttcccagcacaatttattgaataaactatcctttctcctgtgtattctt
i cerAty1.NW_012001495v1   C 0 I 4985
s chlSab2.chr17             28471891 2014 -  71996105 gacaattcttaaaagaagacataaaagcagctaacaaatgtataaaaaaaatgctcaaacactaatcattagagaaatgccactcaaaaccacaatgagataccatcttgcaccagtcagaatagctattactaaaaggtaaaaaaaatgacagatattgatgaggctgcagagcaaat-gaacacttacatactgctggtagaaatgtaaattagttcagccact-atggaaagtagtttgggaatttctcgaagacctgaaaatacaattatcattcaacccagcaattccatcactgggtatgtgccccccgcccccagataaattgttctacccaaaatatacatgcactcgcatgttcattgcagcactattcacaattgcaaagacatggaatcaagctgggtgcccattaatggtggattggataaataaaatgtggtacatatacaacagggaatgctacacagccataaaagagaacaaaataatgtcctttgaagcaacatgggtgcagctggaggccattatccttagcaaattaatgcagaaatagaaaaccaaatatcacagcttctcacttgatttaaagtttaaggagctaaattttgggtacatacagacataaagatggaaacaaaaaacactagggatttcaaaaggaaggagaggaggagaggagcaaggacggaaaaacttcctatcatgtactatattcactgtctgggtgacaggattaatataagcccaaacctcagcatcacacaatatatccttgtaataaacctgcccatatacccccctgaatctaaactaaaaatagaaa-taaaaaaaaCCCCTTTTTCATAGTAATCATAAAATATACACTTAGGCAATTTATGAAAATAATGTAGTTTTACATTTGTTCTTTTCACCccagctttatgaagatataattaa---gtaaaaattgaatacacttactgtgtacatgatgttttgacatatgtatatattgtgaaatgattaccacaaaccagctaattaatctatccatcagctgacatatttttttcttgttttgtggtgggaatatttaaaatctacgctcttaacaaatttcaaatattaaatattgtattgttaactatattcaccatgctgcatattaaatccccagaacttgtttgccttaaagctgaaagcttgtatctgctaaccaacatctccctatttttccctcccctagtttttggaaaccaccattctaattctattctctgtttctgtgaattcaactttttaagatttcatgaataagtgagttcatatgctatttgtctttctctgattcatttattttactaagcataatgcccacaaggttgatccacgttattgcag--cacagaatttccttcttttcgatggatgcttggtttgtttccaagtgttggttaatgtgaattatgctacattgaacataagagtgcatatatctctttgagatactaatttcatttcttttgggtatatacccagaagtgggattgctggatatgatggtagctctagttttgatttttgaggaacctccatactgttttctaaaatggctgttccaatttacattcccaccagtagtgcataaggattccctttctttctgaatccttgccaatgcttgttatctcttgtcttgataatagccatcctaacatatgttagctgatctcattgtggttttaattttcatttccgtcatgaatagtgctgttgag------cattatttcacatatctgttggccatatgtatgtcttctattgagaaatgtctgctcaggt-ctttggccatttaaaaatcaatttattgtattatttttgctatagagttgtttgaattccttgtggttttttg-aatattaactccttatcagatttgtgagttatgtaagaaaatggttccattttattcttttgtgtatagagac-taaggtttcc---cacaatttattgaataaactatcctttctcctgtgtattctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2179168 2015 +   2316924 gacaattcttaaaagaagacataaaagcagctaacaaatgtataaaaaaaatgctcaaacactaatcattagagaaatgccactcaaaaccacaatgagataccatcttgcaccagtcagaatggctattactaaaaggt-aaaaaaatgacagatattgatgaggctgcagagaaaat-gaacacttacatactgctggtagaaatgtaaattagttcagccact-atggaaagtagtttgggaatttctcgaagacctgaaaatagaattatcattcaacccagcaattccatcactgggtatgtgccccccgcccccagataaattgttctacccaaaatatacatgcactcgcgtgttcattgcagcactattcacaattgcaaagacgtggaatcaagctaggtgcccattaatggtggattggataaataaaatgtggtatatatacaacatggaatgctacacagccataaaagagaacaaaataatgtcctttgaagcaacatgggtgcagctggaggccattatccttagcaaattaatgcagaaatagaaaaccaaatatcacagcttctcacttgatttaaagtttaaggagctaaattttgggtacatatggacataaagatggaaacaacaaacactagggatttcaaaaggaaggagaggaggagaggagcaaggacggaaaaacttcctatcatgtactatattcactgtctgggtgacaggattaatataagcccaaacctcagcatcacacaatacacccttgtaataaacctgcccatatacccccctgaatctaaactaaaaatagaaa-ttaaaaaaaCCCCTTTTTCATAGTAATCATAAAATATACACTTAGGCAATTTATGAAAATAATGTAGTTTTACATTTGTTCTTTTCACCccagctttatgaagatataattaa---gtaaaaattgaatacacttactgtgtacatgatgttttgacatatgtatatattgtgaaatgattaccacaaaccagctaattaatctatccatcagctgacata-ttttttcttgttttgtggtgggaatatttaaaatctacactcttaataaatttcaaatattaaatactgtattgttaactatattcaccatgctgcatattaaatccccagaacttgtttgccttaaagctgaaagcttgtatctgctgaccaacatctccctatttttccctcccctagtttttggaaaccaccattctaattctattctctgtttctgtgaattcaactttttaagatttcatgaataagtgagttcctatgctatttgtctttctctgattcatttattttactaagcataatgcccacaaggttgatccatgttattgcag--cacagaatttccttctttttgatggatgcttggtttgtttccaagtgttggttaatgtgaatgatgctacattgaacataagagtgcatatatctctttgacatactaatttcatttcttttgggtatatacccagaagtgggattgctggataagatggtagctctagttttgatttttgaggaacctccatactgttttctaaaatggctgttccaatttacattcccaccagtagtgcataaggattccttttctttctgaattcttgccaatacttgttatctcttgtcttgataatatccatcctaacatatgttagctgatctcattgtggttttaattttcatttccgtcatgaatagtgctgttgag------cattatttcacatatctgttggccatatgtatgtcttctattgagaaatgtctgctcaggt-ctttggccatttaaaaatcgatttattgtattatttttgctatagagttgtttgaattccttgtggttttttg-aatattaactccttatcagatttgtgagttatgtaagataatggttccattttattcttttgcgtatagagac-taagttttcccagcacaatttattgaataaactatcctttctcctgtgtattctt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2045378 2001 -   3067355 gacaattcttaaaagaagacataaaagcagctaacaaatgtgtaaaaaaaatgcttaaacactaatcattagagaaatgccactcaaaaccacaatgagataccatctcgcaccagtcagaatggctattactaaaaagt-aaaaaaatgacagatattgatgaggctggagagaaaat-gaacacttacatactgctggtagaaatgtaaattagttcagccact-atggaaagtagtttgggaatttctcaaagacctgaaaatagaattatcattcaacccagcaattccatcactgggtatgtgccccccgccccc----aaattgttctaccgaaaatatacatgcactcgcatgttcattgcagcactattcacaattgcaaagacatggaatcaagctaggtgcccattaatggtggattggataaataaaatgtggtacatatacaacatggaatgctacacagccataaaagagaacaaaataatgtcctttgaagcaacatggatgcagctggaggccatcatccttagcaaattaatgcagaaatagaaaaccaaatattacagcttctcacttgatttaaagtttaaggagctaaattttgggtacatacggacataaagatggaaacaacaaacactagggatttcaaaagga-------------aggagcaaggactgaaaaacttcctatcatgtactatattcactgtctgggtaacagaattaatataagcccaaacctcagcatcacacaatatacccttgtgataaacctgcccatataccctcctgaatctaaactaaaaatggaaa-ttaaaaaaaCCCCTTTTTCACAGTAATCATAAAATATACACTTAGGCAATTTATGAAAATAATATAGTTTTACATTTGTTCTTTTCACCccagctttatgaagatataattaagaagtaaaaattgaatacacttactgtgtagatgatgttttgacatatgtatatattgtgaaatgattaccacaaaccagctaattaatctatccatcagctgacata-ttttttcttgttttgtggtgggaatatttaagatctacactcttaacaaatttcaaatattaaatactgtattgttaactatattcaccatgctgcatattaaatccccagaacttggttgccttaaaactgaaagcttgtatctgctgaccaacatctccctattttcccctcccccagcttttggaaaccaccattctaattctattctctgtttctgtgaattcaactttttaaggtttcatgaattagtgagttcatacgctatttgtctttctctgattcatttattttactaagcataacgcccacaaggttgatccatgttattgcag--cacagaatttccttctttttgatggatgcttggtttgtttccaagtgttggttaatgtgaatgatgctacattgaacataagagtgcatatatctcttttatatactaatttcatttcttttgggtatatacccagaagtgggattgctggataagatggtagctctagttttgatttttgaggaaccttcatactgttttctaaaatggccgttccaatttatattcccaccagtagtgcataaggattccccttctttctgaatccttgccaatacttgttaactcttgtcttgataatagccatcctaacatatgttagctgatctcattgtggttttaattttcatttccctcatgaatagtactgttgag------cattatttcacgtatctgttggccatatgtatgtcttctattgagaaatgtctgctcaggt-ctttggccatttaaaaatcaatttattgtattatttttgctatagagttgtttgaattccttgtggttttttt-aatattaactccttatcaggtttgtgagttatgtaagataatggttccattttattcttttgcatatagagac-taagttttcccagcacaatttattgaataaactatcctttctcctgtgtattctt
i colAng1.NW_012115566v1   I 304 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1667034 53839 -   2232465 I
e calJac3.chr4             171559582 40357 - 171630274 I

a score=548854.000000
s hg38.chr6_GL000254v2_alt    321792 120 +   4827813 gacacatttgtcaaatattagttagttgaccatatatgtgaggatttatttttggggacttgattctgttccattggtttgtgtgtctgcttttatgccagtatcatacagttttgattc
s panTro5.chr6              29296818 120 + 175400573 gacacatttgtcaaatattagttagttgaccatatatgtgaggatttatttttggggacttgattctgttccattggtttgtgtgtctgcttttatgccagtatcatacagttttgattc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29542720 120 + 173848474 gacacatttgtcaaatattagttagttgaccatatatgtgaggatttatttttggggacttgattctgttccattggtttgtgtgtctgcttttatgccagtatcatacagttttgattc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5340048 120 +   6154872 gacacatttgtcaaatattagttagttgaccatatatgtgtggatttatttttggggacttgattctgttccattggtttgtgtgtctgcttttatgccagtatcatacagttttgattc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74352869 120 + 122973662 gacacatttgtcaaatagtagttagttgaccatatatgtgtggatatatttctggggacttgattgtgctccattggtctgtgtgtctgcttttatgccagtatcatactgttttgatcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29509081 120 + 172585720 gacacatttgtcaaatattagttagttgaccatatatgtgtagatttatttctggggtcttgattctgttccattagtctatgtgtctacttttatgccagtatcatactgttttgattc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29170197 120 - 170955103 gacacatttgtcaaatattagttagttgaccatatatgtgtagatttatttctggggtcttgattctgttccattagtctatgtgtctacttttatgccagtatcatactgttttgattc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2162611 120 -   2996164 gacacatttgtcaaatattagttagttgaccatatatgtgtagatttatttctggggtcttgattctgttccattagtctatgtgtctacttttatgccagtatcatactgttttgattc
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28473905 107 -  71996105 gacacatttgtcaaatattagtta-------------gtgtagatttatttttggggtcttgattctgttccattagtctatgtgtctgcttttatgccagtatcatactgttttgattc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2181183 120 +   2316924 gacacatttgtcaaatattagttagttgaccatatatgtgtagatttatttctggggtcttgattctgttccattagtctatatgtctgcttttatgccagtatcatactgtattgattc
i manLeu1.NW_012104165v1   C 0 I 4675
s colAng1.NW_012115566v1     2047379 120 -   3067355 gacacatttgtcaaatattagttagttgaccatatatgtgtggatttatttctggggtcttgattctgttccattagtctatgtgtctgcttttatgccagtatcatactgttttgattc
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1667034 53839 -   2232465 I
e calJac3.chr4             171559582 40357 - 171630274 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I

a score=215565.000000
s hg38.chr6_GL000254v2_alt    321912 52 +   4827813 ttatggttctgtaatatggtttcaagtcaggaaatgtgatgcctcagctttt
s panTro5.chr6              29296938 52 + 175400573 ttatggctctgtaatatggtttcaagtcaggaaatgtgatgcctcagctttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29542840 52 + 173848474 ttatggttctgtaatatggtttcaagtcaggaaatgtgatgcctcagctttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5340168 52 +   6154872 ttatagttctgtaatatggtttcaagtcaggaaatgtgatgcctcagctttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74352989 52 + 122973662 ctatggttctgtaatatggtttcaagtcaggaaatgtgatgcctcagctttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29509201 52 + 172585720 ctatggttctgtaatatggtttcaagtcaggaaatgtgatgcctcagctttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29170317 52 - 170955103 ctatggttctgtaatatggtttcaagtcaggaaatgtgatgcctcagctttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2162731 52 -   2996164 ctatggttctgtaatatggtttcaagtcaggaaatgtgatgcctcagctttt
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28474012 52 -  71996105 ctatggttctgtaatatggtttcaagtcaggaaatgtgatgcctcagctttt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     2047499 52 -   3067355 ctatggttctgtaatatggtttcaagtcaggaaatgtgatgcctcagctttt
i colAng1.NW_012115566v1   C 0 I 17490
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1667034 53839 -   2232465 I
e calJac3.chr4             171559582 40357 - 171630274 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I

a score=919902.000000
s hg38.chr6_GL000254v2_alt    321964 309 +   4827813 ctgttgt---tgttgttcaagttgttttggcta--------------tttatg-tttttttgtggttccatacatattttagaatttttcctccaatgctgtgaaaaatatcattagagttttgataagaattgcattgaatctgtcaattactttgggtattatggacattttagtagtattaattcttctattccatgagcatgaaatattttaaacatttatttgtattttcttcaatttatttcatcaatattttatagttttaagtgtaaagattaatcacttccagggttaaatttatttctaaatattttattcattttg
s panTro5.chr6              29296990 308 + 175400573 ctgttgt---tgttgttcaagttgttttggcta--------------tttatg-tttttttgtggttccatacatattttagaatttttcctccaatgctgtgaaaaatatt-ttagagttttgataagaattgcattgaatctgtcaattactttgggtattatggacattttagtagtattaattcttctattccatgagcatgaaatattttaaacatttatttgtattttcttcaatttatttcatcaatattttatagttttaagtgtaaagattaatcacttccagggttaaatttatttctaaatattttattcattttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29542892 309 + 173848474 ctgttgt---tgttgttcaagttgttttggcta--------------tctatg-tttttttgtggttccatacatattttagaatttttcctccaatgctgtgaaaaatatcattagagttttgataagaattgcattgaatctgtcaattactttgggtattatggacattttagtagtattaattcttctattccatgagcatgaaatattttaaacatttatttgtattttcttcaatttatttcatcaatattttatagttttaagtgtaaagattaatcacttccagggttaaatttatttctaaatattttattcattttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5340220 309 +   6154872 ctgttgt---tgttgttcaagtcgttttggcta--------------tttatg-tttttttgtggttccatacatattttagaatttttcctccaatgctgtgaaaaatatcattagagttttgataagaattgcattgaatctgtcaattactttgggtattatggacattttagtagtattaattcttctattccatgagcatgaaatattttaaacatttatttgtattttcttcaatttatttcatcaatattttatagttttaagtgtaaagattaatcacttccagggttaaatttatttctaaatattttattcattttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74353041 310 + 122973662 atgttgt---tgttgttcaagttgttttggcta--------------tttatgttttttttgtggttccatacatattttagaatttttcctctattgctgtgaaaaatgtccttagagttttgataagaattgcattgaatctgtcaatgactttgggtattatggacattttagtagtagtaattcttctattccataagcatgaaatattttaaacatttatttgtattttcttcaatttatttcatcaatattttatagttttaagtgtaaagattaatcacttccagggttaaatttgtttctaaatagtttactcattttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29509253 315 + 172585720 ------a---tgttgttcaagttgttttggctatttgtttgtttgtttttttt-tttttttgtggttccatacatattttagaattgtttctctaatgctgtgaaaaatgtcattagagttttgataagaattgcattgaatctgtcaattactttgggtattatggacattttagtagtattaattcttctattccatgagcatgaaatattttaaacatttatttgtattttcttcaatatatttcatcaata--ttatagttttaagtgtaaagattaatcaactccagggttaaatttatttctaaatattttattcattttg
i rheMac8.chr4             C 0 I 4457
s macFas5.chr4              29170369 313 - 170955103 ------a---tgttgttcaagttgttttggctatttgtttgtttg--tttgtt-tttttttgtggttccatacatattttagaattgtttctctaatgctgtgaaaaatgtcattagagttttgataagaattgcattgaatctgtcaattactttgggtattatggacattttagtagtattaattcttctattccatgagcatgaaatattttcaacatttatttgtattttcttcaatatatttcatcaata--ttatagttttaagtgtaaagattaatcaactccagggttaaatttatttctaaatattttattcattttg
i macFas5.chr4             C 0 N 0
s macNem1.NW_012011356v1     2162783 302 -   2996164 ------a---tgttgttcaagttgttttggctattt-----------tttg---tttttttgtggttccatacatattttagaattgtttctctaatgctgtgaaaaatgtcattagagttttgataagaattgcattgaatctgtcaattactttgggtattatggacattttagtagtattaattcttctattccatgagcatgaaatattttaaacatttatttgtatcttcttcaatatatttcatcaata--ttatagttttaagtgtaaagattaatcaactccagggttaaatttatttctaaatattttattcattttg
i macNem1.NW_012011356v1   C 0 I 4759
s chlSab2.chr17             28474064 311 -  71996105 ------atgttgttgttcaagttgttttggctattttttt-------tttttt-tttttttgtggttccatacatattttagaattgtttccctaatgctgtgaaaaatgtcattagagttttgataagaattgcattgaatctgtcaattactttgggtattatggacattttagtagtattaattcttctattccataagcatgaaatattttaaacatttatttgtattttcttcaatatatttcatcaata--ttatagttttaagtgtaaagattaatcaactccagggttaaatttatttctaaatattttattcattttg
i chlSab2.chr17            C 0 I 4453
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1667034 53839 -   2232465 I
e calJac3.chr4             171559582 40357 - 171630274 I
e colAng1.NW_012115566v1     2047551 17490 -   3067355 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I

a score=5860131.000000
s hg38.chr6_GL000254v2_alt    322273 6654 +   4827813 [encoded data, 6826 characters]
s panTro5.chr6              29297298 6644 + 175400573 [encoded data, 6826 characters]
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29543201 6722 + 173848474 [encoded data, 6826 characters]
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5340529 6657 +   6154872 [encoded data, 6826 characters]
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74353351 6640 + 122973662 [encoded data, 6826 characters]
i nomLeu3.chr1a            C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1667034 53839 -   2232465 I
e calJac3.chr4             171559582 40357 - 171630274 I
e colAng1.NW_012115566v1     2047551 17490 -   3067355 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=350395.000000
s hg38.chr6_GL000254v2_alt    328927 273 +   4827813 cagggtcttgctctgtcacccagactagagtgcagtggtgtgatcatggctcactgcagacttgaccttctggtctccgggaatcctgcctcagccccctgaatagctggaactatggaactatgagcatgcaccaccacacttggctaatttttaaatttctgtaggataggtgtctcactacatagcccaagttggtcttgaacttctgggctgaagcaattctcctgccttggcttcccaaagtgctgggattagaggtataagccacca
s panTro5.chr6              29303942 273 + 175400573 cagggtcttgctctgtcacccagactagagtgcagtggtgtgatcatggctcactgcagacttgaccttctggtctccgggaatcctgcctcagccccctgagtagctggaactatggaactatgagcatgcaccaccacacttggctaatttttaaatttctgtaggataggtgtctcactacatagcccaagttggtcttgaacttctgggctgaagcaattctcctgccttggcttcccaaagtgctgggattagaggtatgagccacca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29549923 273 + 173848474 cagggtcttgctctgtcacccagactagagtgcagtggtgtgatcatggctcactgcagacttgaccttctggtctccgggaatcctgcctcagccccctgagtagctggaactatggaactatgagcatgcaccaccacacttggctaatttttaaatttctgtaggataggtgtctcactacatagcccaagttggtcttgaacttctgggctgaagcaattctcctgccttggcttcccaaagtgctgggattagaggtatgagccacca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5347186 273 +   6154872 cagggtcttgctctgtcacccagaccagagtgcagtggtgtgatcatggctcactgcagacttgaccttctggtctctgggaatcctgcctcagccccctgagtagctagaactatggaactatgagcatgcaccaccacacttggctaatttttaaatttctgtaggataggtgtctcactacatagcccaagttggtcttgaacttctgggctgaagcagttctcctgccttggcttcccaaagtgctgggattagaggtatgagccacca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74359991 265 + 122973662 cagggtcttgctctgtcacccagactacagtgcagtggtgtgatcatggctcactgcagacttgaccttctggtctcagggaatccttcctcagccccctcagtagc--------tggaactatgagcatgcactaccatacttggctactttttaaatttctgtaggataggggtctgactacatagtccaagctggtcttctacttctgggctgaagcaattctcctgccttggcctcccaaagtgctgggattagaggtatgagccacca
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1     2065041 265 -   3067355 cagagtcttgctctcttacccagactagagtgcagtggtatgatcatggctcactgcagacttgacctcctggtctcagggaatcctgcctcagccccctgagtagc--------tggaactatgagcatgcaccaccacacttggctaattcttaaatttctctagagatggggtctcactatgtagcccaagctggtcttgaacttctgggctgaagcaattctcctgccttggcctcccaaagtgctgggatcagaggtatgagccacca
i colAng1.NW_012115566v1   I 17490 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1667034 53839 -   2232465 I
e calJac3.chr4             171559582 40357 - 171630274 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=3225.000000
s hg38.chr6_GL000254v2_alt    329200 2 +   4827813 tg
s panTro5.chr6              29304215 2 + 175400573 tg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29550196 2 + 173848474 tg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5347459 2 +   6154872 tg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74360256 2 + 122973662 tg
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1     2065306 2 -   3067355 tg
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1720873 2 -   2232465 TA
i otoGar3.GL873742         I 53839 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171559582 40357 - 171630274 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=13584.000000
s hg38.chr6_GL000254v2_alt    329202 9 +   4827813 cctggtcCT
s panTro5.chr6              29304217 9 + 175400573 cctggtcCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29550198 9 + 173848474 cctggtcCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5347461 9 +   6154872 cctggtcCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74360258 9 + 122973662 cctggtcCT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29302314 8 - 170955103 -CTTGATTC
i macFas5.chr4             N 0 C 0
s colAng1.NW_012115566v1     2065308 9 -   3067355 ccTCGTCCT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1720875 9 -   2232465 CCTGGATTC
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171559582 40357 - 171630274 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=606910.000000
s hg38.chr6_GL000254v2_alt    329211 333 +   4827813 TTCATGAGTTTTTATGCTTGCAATTCAGATTAATAAGTGAATGACAGTGAGAATTCAATTCTCCAATGCCTACTCTCATAATCT----------------------AA-AGAAAGCAAGGCAGAA----------GTGTTTTCCTGAAAGGAAGAATCTTTGTTTTTAGTTTTTTAAAGATTAGGTTTACTGGA-TGTCAGAAAAATATGTTTACATTAAGGCAACATTGAGTATTGATGATGGTATGTAAGTTCTTAGCTGTCAagcctcttaaacagtgttctctgaattttacatatgtgaaaagacattaatcctcttagactttggggttgttgtgtgaggcctaggaggagcacactagca
s panTro5.chr6              29304226 333 + 175400573 TTCATGAGTTTTTATGCTTGCAATTCAGATTAATAAGTGAATGACAGTGAGAATTCAATTCTCCAATGCCTACTCTCATAATCT----------------------AA-AGAAAGCAAGGCAGAA----------GTGTTTTCCTGAAAGGAAGAATCTTTGTTTTTAGTTTTTTAAAGATTAGGTTTACTGGA-TGTCAGAAAAATATGTTTACATTAAGGCAACATTGAGTATTGATGATGGTATGTAAGTTCTTAGCTGTCAagcctcttaaacagtgttctctgaattttacatatgtgaaaagacattaatcctcttagactttggggttgttgtgtgaggcctaggaggagcacactagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29550207 333 + 173848474 TTCATGAGTTTTTATGCTTGCAATTCAGATTAATAAGTGAATGACAGTGAGAATTCAATTCTCCAATGCCTACTCTCATAATCT----------------------AA-AGAAAGCAAGGCAGAA----------CTGTTTTCCTGAAAGGAAGAATCTTTGTTTTTAGTTTTTTAAAGATTAGGTTTACTGGA-TGTCAGAAAAATATGTTTACATTAAGGCAACATTGAGTATTGATGATGGTATGTAAGTTCTTAGCTGTCAagcctcttaaacagtgttctctgaattttacatatgtgaaaagacattaatcctcttagactttggggttgttgtgtgaggcctaggaggagcacactagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5347470 333 +   6154872 TTCATGAGTTTTTATGCTTGCAATTCAGATTAATAAGTGGATGACAGTGAGAATTCAATTCTCCAATGCCTACTCTCATAATCT----------------------AA-AGAAAGCAAGGCAGAA----------GTGTTTTCCTGAAAGGAAGAATCTTTGTTTTTAGTTTTTTAAAGATTAGGTTTACTGGA-TGTCAGAAAAATATGTTTACATTAAGGCAACATTGAGTATTGATGATGGTATGTAAGTTCTTAGCTGTCAAGCCTCTTAAACAGTGTTCTCTGAATTttacatatgtgaaaagacattaatcctcttagactttggggttgttgtgtgaggcctaggaggagcacactagca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74360267 307 + 122973662 TTCATGAGTTTTTATGCTTGCAATTCAGACTGATAAGTGAATGACAGTGAGAATTCAATTCTCCAATGCCTACTCTCATAATCT----------------------AA-AGAAAGCAATGCAGAA----------ATGGTTTCCTGAAAGGAAGAATCTTTGTTTTTAGTTTTTTAAAGATTAGGTTTACTGGA-TGTCAGAAAAATATGTTTACATTAAGGCAACATTGAGTTTTGATGATGGTGTGTAAGTTCTTAGCTGTCAAGCCTCTTAAACAGTGAT--------------------------CATTAATCCTCTTAGACTTTGGGGTTGTTGTGTGAGGCCTAGGAGGAGCACGCTAGCA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29302322 348 - 170955103 TTTATGAGTTGTTACATTTGAAAATTCGATTGATGAGTTAATGACAAT---AATTTAACTCTCTCATGCTTATCCCCCTCATCTAACCAAAACaaacaaacaaacaaa-aacaaacaaaccaaaaaaaccctaAGATGGAATGTTGAGGTGAGGAACCTTTG------AATTTTTAAATATTAGATCTACCAGAGCCTCAGAAAGACATGTCTACATTAAGAGGACGTTGACTATTGATATAGACATGTAAGTTCTTTACTGCCACGTTCTT-----AGTAATTCCTGAAGTGTACGTGTATGAAATGACATT----CTCTCATACTTTACGGTTGCTTATTAGTGCCTAGAAGAAATACAGTCTTT
i macFas5.chr4             C 0 C 0
s colAng1.NW_012115566v1     2065317 333 -   3067355 TTCATGAGTTTTTATGCTTGCAATTCAGATTGATAAGTGAATGACAGTGAGAATTCAATTCTCCAATGCCTACTCTCATTATCT----------------------AA-AGAAAGCAAGGCAGAA----------ATGGTATCCTGAAGGGAAGAATCTTTGTTTTTAGTTTTTTAAAGATTAGGTTTACTGGA-TGTCAGAAAAATATGTTTACATTAAGGCAAGATTGAGTATTGATGTTGGCATGTAAGTTCTTAGCTGTCAagcctcttaaacagtgatctctgaattttacaggtgtgaaaaggtattaatcctcttagactttggggttgttgtgtgaggcctaggatgagcacactagca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171599939 320 - 171630274 TTTATGAGTTTTTACATTTGAAAATTAGATTCATAACTTAGTGACAAT---AATTTAACTCTCTCATGCCTATCCCCCTCATGT----------------------AA-CCAAAACCAAAACAAG----------GTGGAATGCTATGTTGAGATACCTCTG------AATTTTTAAAAATTAGGTTTAGCAGAGCCTCAGAAAGACATGTTAACATTAAGAGGATTTTGACTATTGATTTAGGCATGTAAGTTATTTACTGCCATGTTCTT-----AGTAATTCCTGAATTGTACATGAATGAAATGACATGAATTCTCTCATACTTCAGCGTTTCTTGTTAGTGCCTGGAAGGCAGACAGTCTCT
i calJac3.chr4             I 40357 C 0
s otoGar3.GL873742           1720884 270 -   2232465 TTCTTGAGTTTTTACATTTGAAATT---GTTACTATGTTAATGACA------------------AATGACTACCCTCCTGATCT----------------------AATCCAAAATAAAACAGGG----------ATAG-ATATTGAGGGGAGGAATCTTTC-TTTAAATTTCTTCAATATTAGGC---------CTCCAAAAAGACATGTTTACATTAAGAGGAATTTGACTACTGATGTGGGCATGTAAGTTCTTAACCACCAAG-TTATTAGACAGTGATC---------------------------TTAATACTCCCATATTTTGAGATTACT-TTTAGGGTCAAGGATAGACACCTT----
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=882285.000000
s hg38.chr6_GL000254v2_alt    329544 357 +   4827813 gtggccagtcttctttaatcaagaacagcc---tTATACATT--CCATGTTATGTGTGCTATGAT-GTGAAAATATTTGGAAAAC----TCTCTCTTCCCCCATTGCTGCCAGACTT-ATGGTCTTTCTTTGTTCCCAGGTGGCTGATTTAGGTTCCAGGCAGAA-----------------TGGAATT-------------G-GGTGCCCTGGAAGCCTGAGGTAGATTTGGTACTATGGAGGGTGCACTTGCTGATATGAAGTTTTATTTTATACAAATCCTGGAGAAGCTAAGTGAGGCCATGTCAGTGTTGCCAGAAGACATGAGAATCATGCCAGATCTCTGTGGCTTAACATTGGAACATAGTG----GTAAGTGCAGCTATATTTGTGTTTCTTAA
s panTro5.chr6              29304559 358 + 175400573 gtggccagtcttctttaatcaagaacagcc---tTATACATT--CCATGTTATGTGTGCTATGAT-GTGAAAATATTTGGAAAAC----TCTCTCTTCCCCCATTGCTGCCAGACTTAATGGTCTTTCTTTGTTCCCAGGTGGCTGATTTAGGTTCCAGGCAGAA-----------------TGGAATT-------------G-GGTGCCCTGGAAGCCTGAGGTAGATTTGGTACTATGGAGGGTGCACTTGCTGATATGAAGTTTTATTTTATACAAATCCTGGAGAAGCTAAATGAGGCCATGTCAGTGTTGCCAGAAGACATGAGAATCATGCCAGATCTCTGTGGCTTAACATTGGAACATAGTG----GTAAGTGCAGCTATATTTGTGTTTCTTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29550540 358 + 173848474 gtggccagtcttctttaatcaagaacagcc---tTATACATT--CCATGTTATGTGTGCTATGAT-GTGAAAATATTTGGAAAAC----TCTCTCTTCCCCCATTGCTGCCAGACTTAATGGTCTTTCTTTGTTCCCAGGTGGCTGATTTAGGTTCCAGGCAGAA-----------------TGGAATT-------------G-GGTGCCCTGGAAGCCTGAGGTAGATTTGGTACTATGGAGGGTGCACTTGCTGATATGAAGTTTTATTTTATACAAATCCTGGAGAAGCTAAATGAGGCCATGTCAGTGTTGCCAGAAGACATGAGAATCATGCCAGATCTCTGTGGCTTAACATTGGAACATAGTG----GTAAGTGCAGCTATATTTGTGTTTCTTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5347803 357 +   6154872 gtggccagtcttctttaatcaagaacagcc---tTATACATT--CCATGTTATGTGTGCTATGAT-GTGAAAATATTTGGAAAAC----TCTCTCTTCCCCCATTGCTGCCAGACTT-ATGGTCTTTCTTTGTTCCCAGGTGGCTGATTTAGATTCCAAGCAGAA-----------------TGGAATT-------------G-GGTGCCCTGGAAGCCTGAGGTAGATTTGGTACTATGGAGGGTGCACTTGCTGATATGAAGTTTTATTTTATACAAATCCTGGAGAAGCTAAGTGAGGCCATGTCAATGTTGCCAGAAGACATGAGAATCATGCCAGATCTCTGTGGCTTAACATTGGAACATAGTG----GTAAGTGCAGCTATATTTGTGTTTCTTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74360574 359 + 122973662 GTGGCCAGTCTTCTTTAATCAAGAACAGCCACATTATACATT--CCATGTTATGTGTGCTGTGAT-GTGAAAATATTTGGAAAAC----TCTCTATTCCCCCACTGCTGCCAGACTT-ATGGTCTTTCTTTGTTCCCAGGTGGCTGATTTAGGTTCCAAGCAGAA-----------------TGGAATT-------------G-GGTGCCCTGGAAGCCTGAGGCAGATTTGGTACTATGGAGGGTGCACTTGCTGATATGAAGTTTTATTTTATACAAATCCTGGAGAAGCTAAGTGAGGCCATGTCAATGTTGCCAGAAGACATGAGAATCATGCCAGATCTCTGTGGCTTAACA-TGGAACATAGTG----GTAAGTGCAGCTATATTTGTGTTTCTTAA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29302670 388 - 170955103 GTGGTCAGTCTCCTTGGATCAACAAAAGCC----TGTACTTTC-CCGTTTTTCACGTGCTATTTA-GTGAAAATGTTGAGAAAGCACCATCTATCCTGCGCCATTGGCATCCCACTG-ATGCTCTGTCCTGGTTGCTAGGTG-CAGATTTAGGTTCCAAGCAGAACACTC-CTAGTGTTCTCTGCAGTTTGTTGTAGCATCAG-AGTGTCTTGGCAACCAAAGGCAGAGCTGGTGCTATGGAGGACCTGCTTACTGCTATGAGATATTACTTTATGCAGGTCCTGGAGAAGCTGATTGAGGCCAAGTCACTGTTGCAAGGAGACACGAGACTCACATCAGAGTTCTATGGCTTAACA-TGGGAGATGGTG----GTAAGTGCAGCTGTATTTGGATTTCACAA
i macFas5.chr4             C 0 C 0
s colAng1.NW_012115566v1     2065650 357 -   3067355 gtggccagtcttctttaatcaagaacagcc---ttatacattt-ccatgttatgtgtgctatgat-gtgaaaatatttggaaaac----tctgTCTTCCCCCATTGCTGCCAGACTT-ATGGTCTTTCTTTGTTCCCAGGTGACTGATTTAGGTTCCAAGCAGAA-----------------TGGAATT-------------G-GGTGCCCTGGAAGCCTGAGGCAGATTTGGTACTATGGAGGGTGCACTTGCTGATATGAAGTTTTATTTTATACAAATCCTGGAGAAGCTAAGTGAGGCCGTGCCAATGTTGCCAGAAGACATGAGAATCATGCCAGATCTCTGTGGCTTAACA-TGGAACATAGTG----GTAAGTGCAGCTATATTTGTGTTTCTTAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171600259 391 - 171630274 GT-GCCGGTCTCCTTGGATCAACAAGAGCC---TTGTAGCTTCTCAATTTTTCATGTGCTATTTTAGGGAAAATGTTTAGAAAGCACCATCTGTCCTCCCCCATTGGCACCCCACTG-ATGCTCTGTCCTGGTTGCTAGGTG-CAGATTTAGGTTCCAAGCAGAATGCTC-CTAGTGTTCTCTGCAGTT---TGTAGAATCAG-AGGGTCTTGGCAACCAAAGGTGGATTTGGTGCTGTGGAAAATCTGCTTACTGCTAAGAGGTATTACTTTACACAGGTCCTGGAGAAGCTGATGGAGGCCAAGTCAATGTTGCAAGGAGACATGAGACTCACATCAGAGTTCTATGGTTTCACC-TGGGAGATGGTGGTAAGTAAGTGCAGCTATATTTGGGTTTTGTAA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1721154 369 -   2232465 GTGGCTAGCAT--TTTGTTCAAGAATAGCC----TGTATGTTT-CTATGTTATATGTTTTGTTAA-GCGAAAATGTTTGGGAAATACTGAATACCCTCCCTCATTGCCATCACATTG-ATGGTCTCAATTGGTTGCCAGGTG-AAGACTTAGGTTCCAAACAGAACACTC-CTAGTGTTCTTTGCAGTTTGTTGT-------G-GAGACTCATGGCACCTGAGGCAGA-TTGGTAGTATGGAGGACCTGCTTGCTGCTATGAAGTCCTACTTGATACA-----TGTAGG----GAGTGAGGCCATGTCAGTGTTTCCAGGAGACACGAGACTCGCATAAAATTTCTGTGGCCTAACA-TGGGAGATGATG----GTAAGTGAAAATATATTTGtgatactaga
i otoGar3.GL873742         C 0 I 554
s dasNov3.JH570037            313753 370 -    859332 GTTGCCAGTCTCCTTTTTCCAAGAGCAGTC---TTGTACTTTT-CCAC-TCATTTGTGCTTTACC-ATGAAAATGTTTGGGACATGCTCTCTGTTTTCCCAAATCACGCCTTCGCTC-ACTCTCTCCTCTGGTTGCTAGGTT-TTGGTTGAAGTTCCAAGCAGACTGCTCACTAGTTTCTTGTGGGATA-------------GTAGGGTCCTGGCAACCTGAGG-AAATTTGGTACCATGGAGGACTCA-----TGCTAGGATGTTCTGCTTCATATACATCCTGGTGAAGCTGAGTGAGGCCATGTCAGTGTTGCAAGGAGTCACAGAACTTAGTCCAGAGCTCTATGGTTTAATG-TGGGAGTTGGTG----CTAAGTGCAGCTGTATTTGTGCTTTCAA-
i dasNov3.JH570037         N 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=284625.000000
s hg38.chr6_GL000254v2_alt    329901 117 +   4827813 TAGTTGAAAGCCAGGTTTATAT--AAATAG-GAAGA--AAGAGTTTGCCAT-AGAA-TTTATGCTTTAGTTGGAGAAAAATGTAAAGTTGTTGATAAA-TTAGGCTGATTAAAAAATAATGTGAA
s panTro5.chr6              29304917 117 + 175400573 TAGTTGAAAGCCAGGTTTATAT--AAATAG-GAAGA--AAGAGTTTGCCAT-AGAA-TTTATGCTTTAGTTGGAGAAAAATGTAAAGTTGTTGATAAA-TTAGGCTGATTAAAAAATAATGTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29550898 117 + 173848474 TAGTTGAAAGCCAGGTTTATAT--AAATAG-GAAGA--AAGAGTTTGCCAT-AGAA-TTTATGCTTTAGTTGGAGAAAAATGTAAAGTTGTTGATAAA-TTAGGCTGATTAAAAAATAATGTGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5348160 117 +   6154872 TAGTTGAAAGCCAGGTTTATAT--AAATAG-GAAGA--AAGAGTTTGCCAT-AGAA-TTTATGCTTTAGTTGGAGAAAAATGTAAAGTTTTTGATAAA-TTAGGCTGATTAAAAAATAATGTGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74360933 117 + 122973662 CAGTTGAAAGCCAGGTTTATAT--AAATAG-GAAGA--AAGAGTTTGCCAT-AGAA-TTTATGCTTTAGTTGGAGAAAAATGTAAAGTTTTTGATAAA-TTAGGCTGATTAAAAAATAATGTGAA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29303058 117 - 170955103 TTA-TAAAAGCCAACTTCATGT--AAAGAGAGTAAA--AAGAGTTTGCCAG-AGAAGTTTCTTCTGTAGTTGAAGACAAATGTAATG-TTTTAATAAA-TTAGGCTGATTAAAAAAGAATATGAA
i macFas5.chr4             C 0 I 388
s colAng1.NW_012115566v1     2066007 117 -   3067355 TAGTTGAAAGCCAAGTTTATAC--ATATAG-GAAGA--AAGAGTTTGCCAT-AGAA-TTTATGCTTTAGTTGGAGAAAAATGTAAAATTTTTGATAAA-TTAGGCTGATTAAAAAATAATATGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171600650 117 - 171630274 TTA-TAAAAGCCAACTTTATGT--AAAGAGAGGAAA--AAAAGTTTACCAG-AGAAGTTTCTTCTCTAGTTGAAGACAAATGTAAAG-TTTTAATAAA-TTAGGCTGATTAAAAAAGAATATGAA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1722077 118 -   2232465 TAATTGAAAGGCAAATTTATAC--AGATTG-GGAAAAGAAGAGTTTACCATAAGAA-TGTCTGCTGTAGTTAAAGATAAATGTAAAGTTCTT-ACAAA-TTAAGCTAATT-TAAAACACTAAGAA
i otoGar3.GL873742         I 554 I 1
s dasNov3.JH570037            314123 118 -    859332 TAGTTAAAAATAGTTTTTTTTTTAATATAG-GGAAA--ATCAATTAATGACAAGTG-TTTCTGCTCTA-CTGAAGAAAAATGTCA--TTTGTGATAAAGTTATTCTGCTTAAAAAAGAAAATGAA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=-880.000000
s hg38.chr6_GL000254v2_alt    330018 1 +   4827813 -C
s panTro5.chr6              29305034 1 + 175400573 -C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29551015 1 + 173848474 -C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5348277 1 +   6154872 -C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361050 1 + 122973662 -C
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29303563 1 - 170955103 -C
i macFas5.chr4             I 388 C 0
s colAng1.NW_012115566v1     2066124 1 -   3067355 -C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171600767 1 - 171630274 -C
i calJac3.chr4             C 0 I 333
s dasNov3.JH570037            314241 1 -    859332 G-
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1722195 1 -   2232465 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=173460.000000
s hg38.chr6_GL000254v2_alt    330019 91 +   4827813 ACTTA-AATTACCTTTAATGGAGTGCAGCCTTGAGAAGAAGATACCACGTGGTCCAAGTC-TATATCAAATTTGAGTTTAAAATAGATACTTT
s panTro5.chr6              29305035 91 + 175400573 ACTTA-AATTACCTTTAATGGAGTGCAGCCTTGAGAAGAAGATACCAAGTGGTCCAAGTC-TATATCAAATTTGAGTTTAAAATAGATACTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29551016 91 + 173848474 ACTTA-AATTACCTTTAATGGAGTGCAGCCTTGAGAAGAAGATACCAAGTGGTCCAAGTC-TATATCAAATTTGAGTTTAAAATAGATACTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5348278 91 +   6154872 ACTTA-AATTACCTTTAATGGAGTGCAGCCTTGAGAAGAAGATACCAAGTGGTCCAAGTC-TATATCAAATTTGAGTTTAAAATAGATACTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361051 91 + 122973662 ACTTA-AATTACCTTTAATGGAGTGCAGCCTTGAGAAGAAGGTATCAAGTGGTCCAAGTC-TATAGCAAATTTGAGTTTAAAATAGATACTTT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29303564 91 - 170955103 ATATA-AAGTATTTGTCATGGAGTCCTGCCCTTAGAGCAAGGCATCAAATCCTCTAAGTG-TATAGGAAATTTGAATTCAAAATAGATGCTTT
i macFas5.chr4             C 0 I 842
s colAng1.NW_012115566v1     2066125 91 -   3067355 ACTTA-AATTACCTTTAATGGAGTGCAGCCTTGAGAAGAAGGTATCAAGTGGTCTAAGTC-TATAGCAAATTTGAGTTTAAAATAGACACTTT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1722196 75 -   2232465 ---AT-AGTTATCTGTAACAGAATGCAGCCTT-AGAATAAGA-ATTGAGTGGTATAAACC-TATCAAAAAT-----------ACAGATGCTTG
i otoGar3.GL873742         I 1 C 0
s dasNov3.JH570037            314242 89 -    859332 ACATAGAGTCAATTTTAGTGAACCCCAGCCTTGAGAACAAGGCATGAGGAGCTCTAAATCTTATGGCAAAC-TGAGTTTAA---GTACACTTT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171600768 333 - 171630274 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=18928.000000
s hg38.chr6_GL000254v2_alt    330110 12 +   4827813 CAGAAAAGAATC
s panTro5.chr6              29305126 12 + 175400573 CAGAAAAGAATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29551107 12 + 173848474 CAGAAAAGAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5348369 12 +   6154872 CAGAAAAGAATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361142 12 + 122973662 CAGAAAAGAATC
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1     2066216 12 -   3067355 CAGAAAAGAATC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1722271 11 -   2232465 -AAGAAAACATG
i otoGar3.GL873742         C 0 I 1
s dasNov3.JH570037            314331 12 -    859332 AGTGAAAGGATA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171600768 333 - 171630274 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e macFas5.chr4              29303655 842 - 170955103 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=45548.000000
s hg38.chr6_GL000254v2_alt    330122 21 +   4827813 AAAAGGAAGAAAGTCTTAATG
s panTro5.chr6              29305138 21 + 175400573 AAAAGGAAGAAAGTCTTAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29551119 21 + 173848474 AAAAGGAAGAAAGTCTTAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5348381 21 +   6154872 AAAAGGAAGAAAGTCTTAATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361154 21 + 122973662 AAAAGGAAGAAAGTCTTAATG
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29304497 21 - 170955103 aagaaaAAGAACACCTTAAAC
i macFas5.chr4             I 842 C 0
s colAng1.NW_012115566v1     2066228 21 -   3067355 GAAAGGAAGAAAGTCTTAATG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1722283 18 -   2232465 AAAAGAAGGAAAATAATA---
i otoGar3.GL873742         I 1 C 0
s dasNov3.JH570037            314343 21 -    859332 GAAAGGAAGAAAATCTCAATG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171600768 333 - 171630274 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=513005.000000
s hg38.chr6_GL000254v2_alt    330143 254 +   4827813 TTCACATTGAGTTAAGGTGATGGCTAGCTTTGGAACTGGAGTTCAGCCAGTAGAAGATGTGTTCAGGTCCTTTTAATC--CCAAAAAGTGGATG-CGAAATAACCA-TAAATATATGTCAGAAGAGTAAAAAAAGCCAGCAAGTTAAGATAGCAACAAAATATGGCTAAAATGAGCATTGCAATGTCCAGGAAAGCATAAACTACATGCAAAA-AAGCTCAAGAATGGGATGACCAACTGAGCAAACAGTGAACTGAAA
s panTro5.chr6              29305159 254 + 175400573 TTCACATTGAGTTAAGGTGATGGCTAGCTTTGGAACTGGAGTTCAGCCAGTAGAAGATGTGTTCAGGTCCTTTTAATC--CCAAAAAGTGGATG-CAAAATAACCA-TAAAAATATGTCAGAAGAGTAAAAAAAGCCAGCAAGTTAAGATAGCAACAAAATATGGCTAAAATGAGCATTGCAATGTCCAGGAGAGCATAAACTACACGCAAAA-AAGCTCAAGAATGGGATGACCAACTGAGCAAACAGTGAACTGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29551140 254 + 173848474 TTCACATTGAGTTAAGGTGATGGCTAGCTTTGGAACTGGAGTTCAGCCAGTAGAAGATGTGTTCAGGTCCTTTTAATC--CCAAAAAGTGGATG-CAAAATAACCA-TAAAAATATGTCAGAAGAGTAAAAAAAGCCAGCAAGTTAAGATAGCAACAAAATATGGCTAAAATGAGCATTGCAATGTCCAGGAGAGCATAAACTACACGCAAAA-AAGCTCAAGAATGGGATGACCAACTGAGCAAACAGTGAACTGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5348402 253 +   6154872 TTCACATTGAGTTAAGGTGATGGCAAGCTTTAGAACTGGAGTTCAGCCAG-AGAAGATGTGTTCAGGTCCTTTTAATC--CCAAAAAGTGGATG-CGAAATAACCA-TAAAAATATGTCAGAAGAGTAAAAAAAGCCAGCAAGTTAAGATAGCAACAAAATATGGCTAAAATGAGCATTGCAATGTCCAGGAAAGCATAAACTACATGCAAAA-AAGCTCAAGAATGGGATGACCAACTGAGCAAACAGTGAACTGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361175 254 + 122973662 TTTACATTGGGTTAAGGTGATGGCTAGCCTTAGAACTGGAGTTCAGTCAGTAGAAGATGTGTTCAGGTCCTTTTAATT--CCGAAAAGTGGATG-CAAAATAACCA-AAAAAATATGTCAGAAGAGTAAAAAAAGCCAGCAAGTTCAGATAGCAACAAAATATGGCTAAAATGAGCATTGCAATGTCCAGGAAAGCAAAAACTACATGCAAAA-AAGCTCAAGAATGGGATGACCAACTGAGCAAACAGTGAACTGAAA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29304518 244 - 170955103 TTCAGAATGAATTACATTCATGGCTAGGTTTAGAATATGGGTTCAGTTACTGGAAGAGGTGTTGAAGTATTTTAAATA--GTGAGAAGCTGATGCCAAAATAGCTT-TAAAACTATGTTAGTAGAGGAAAAAAA-----CAACTTAAGACAGAAAAAAAAAAGGGTTTGGATGAGCATTTTAATCTTGAGAAAAACCTAACCTGTTTGCAAAAGAAACTCAAG--TTGGATGACAAGTTTACCAC----TGGGCAAAA-
i macFas5.chr4             C 0 C 0
s colAng1.NW_012115566v1     2066249 254 -   3067355 TTCACATTGAGTTAAGGTGATGGCTAGATTTAGAATTGTAGTTCAGTCAGTAGAAGATGTGTTCAAGTCCTTTTAATC--CCAAAAAGTGGATACCAAAATAACCA-TAAAA-TATATCAGAAGAGTAAAAAAAGCCAGCAAGTTAAGATAACAACAAAATATGGCTAAGATGAGCATTGCAATGTTCAGGAAAGCATAAACTACATGCATAA-AAGCTCAAGAATGGGATGACTAACTGAGCAAATGGTGAACTAAAA
i colAng1.NW_012115566v1   C 0 I 3471
s calJac3.chr4             171601101 248 - 171630274 TTCAGAATGAATTACATTCATGGCTAGGTTTAGAA-TATGGTTCAGTCACTGGAAGACATGTTTGAGTCTTTTAAATA--GTGAGAATATGATGCCAGAATAACCT-TAAAACTATATCAGAATAGAAAAAAAA--CTACTACTTACCACAGTGATAAAATAGAGTTTAGATGAGCATTTCAATCTTGAGAAAAATCTAACCTGTTTGCAAAATAATCTCACTGATTGCATGATGAGTCCACCAC----TGGGCAAAA-
i calJac3.chr4             I 333 C 0
s otoGar3.GL873742           1722301 240 -   2232465 TTTACA---AGGTAAGTT--TGGATTAGCCTAAGATGAGGGTTCAGTCACTAGAAGATGTGTTTAATTCTTTTCAATA--GTAAGATGGTGATGTTAAAACAACTT-TATAAATATGTCAGAAAAATATAAGAT--AATTAACTTAAGAT------AAAATGTGACTAAGATGTGCATTTCAAATTTTAAGATAGCCTAAACTACTTACAG---AGGGCAAAAAACTGGACAAAAAATTGTATTTATAGTGGATAAGAA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            314364 236 -    859332 TTTGCAATGACTTAGACTGAT----ACCTTTAGAATAAGAATTCTGTCAC-CGAAGATATGTTCAAGTCCTTCTAGTCAGTCACATCGCTGATGTCAAGGCAACCTCTAGAAATATGTT-GAAAAATAGAAAA------CAATTTACAATGGCAATAAAATAGGGTTAGGATGAAAATTTTAATCTTCAGGAAAAATTA----------AAAG-AAGTTCAAAGAAGGGATGACAACTTGTGCAAACAGTTTACAGAAC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=363155.000000
s hg38.chr6_GL000254v2_alt    330397 209 +   4827813 AGATATGTAAATTATTGTAACAAGTGCTAAATTATAAGTAAGGTCAGAGCAAAT-ATTG----AA---ACACTTGATGAATATTTTCTACTGCACTTGGAGAAGTTAAATTGATGTCAGGGAC-TCAGGGACTTAGAATTGGGGAGAATGAAGCAATCAGAAAGTAAGTACCAGTCA--ATCATCAGTCAAAAGGGGCTTTGAGGAAATTGATTTATGCT
s panTro5.chr6              29305413 209 + 175400573 AGATATGTAAATTATTGTAACAAGTGCTAAATTATAAGTAAGGTCAGAGCAAAT-ATTG----AA---ACACTTGATGAATATTTTCTACTGCACTTGGAGAAGTTAAATTGATGTCAGGGAC-TCAGGGACTTAGAATTGGGGAGAATGAAGCAATCAGAAAGTAAGTACCAGTCA--ATCATCAGTCAAAAGGGGCTTTGAGGAAATTGATTTATGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29551394 209 + 173848474 AGATATGTAAATTATTGTAACAAGTGCTAAATTATAAGTAAGGTCAGAGCAAAT-ATTG----AA---ACACTTGATGAATATTTTCTACTGCACTTGGAGAAGTTAAATTGATGTCAGGGAC-TCAGGGACTTAGAATTGGGGAGAATGAAGCAATCAGAAAGTAAGTACCAGTCA--ATCATCAGTCAAAAGGGGCTTTGAGGAAATTGATTTATGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5348655 209 +   6154872 AGATATGTAAATTATTGTAACAAGTGCTAAATTATAAGTAAGGTCAGAGCAAAT-ATTG----AA---ACACTTGATGAATATTTTCTACTGCACTTGGAGAAGTTAAATTGATGTCAGGGAC-TCAGGGACTTAGAATTGGGGAGAATGAAGCAATCAGAAAGTAAGTACCATTCA--ATCATCAGTCAAAAGGGGCTTTGAGGAAATTGATTTATGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361429 201 + 122973662 AGATATGTAAATTATTGTAACAAGTGCTAAATTATAAGTAAGGTCAGAGCAAAT-ATTG----AA---ACACTTGATGAATAATTTCTACTGCACTTCGAGAAGTTAAATTGATG---------TCAGGGACTTAGAATTGGAGAGAATGAAGCAATCAGAAAATGAGTACCAGTCA--ATAATCAGTCAAAAGGGGCTTTGAGGAAATTGATTTATGCT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29304762 192 - 170955103 AGATATTTATATCCTTGGATTAAATGCTAAGTGATAAGAAA--TCAAACCAAATAACTG-GGTGA---ACAATTGATGAATATTCGCTACTATACTTGGAGAAGATAAAGTG--------GAT-GCTGCGACTTAGAATTGG-----ATCA---AATCAGAA--CGAGTACCAATCA--ATGTTCAGTC-AAAGGCGATTGGAGGAAATTTGTTTATGCT
i macFas5.chr4             C 0 I 311
s calJac3.chr4             171601349 190 - 171630274 CGATATTTATATCCTTGGATTAACTGCTAAGTGATAAGAAA--TCAGACCAAAT-ATCT----GAGTGAAAATTGATGAATAGTC-CTACTATACTTGTAGAAGATAAAACG--------GAT-GCTGGAACTTAGAATTGA-----ATCA---AATCAGAA--TGAGTATCAATCA--GTGTTCAGTC-AAAGAGGATTGGAAAACATTTGTTTATGCT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1722541 199 -   2232465 AGATAGTTGAATTCTTGGAATAAGTGCTGAATCATAAGAAAAGTTAGGCCACAT-CTCTTAGTGA---ACAATAGATGAGTGTTTCCTACTGCACTTGGAGAGGATAATGTG--------GAC-ATAG-GACTTAGAACTGGATAAAATA----AATCAGAATGTAAGTACCAATCA--ATCATCAGTG-AAAGGGGCATTGAAGGAATTGATTTATACC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            314600 205 -    859332 AGATATTTGAATTTCTGGAATAAGCGTTAAATGATAAGAAAAGTTAGAAAAAAC-TCTG-AG-AG---AAAATTGATGGAT-TTTCGTGCTACACTTGGAAAAGATGAGCTG--------AATGACATCGACATTGAATTGCATACAATGAAGAAATTAGAAGGTGGGAAACACTCAATATTATCAGTCAAAAGAGGCTTTAAGGAAATAGATTTATGTT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=9104.000000
s hg38.chr6_GL000254v2_alt    330606 3 +   4827813 TCT
s panTro5.chr6              29305622 3 + 175400573 TCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29551603 3 + 173848474 TCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5348864 3 +   6154872 TCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361630 3 + 122973662 TCT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29305265 3 - 170955103 TCT
i macFas5.chr4             I 311 C 0
s calJac3.chr4             171601539 3 - 171630274 TCT
i calJac3.chr4             C 0 I 1234
s otoGar3.GL873742           1722740 3 -   2232465 TCT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            314805 3 -    859332 TTT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=1120.000000
s hg38.chr6_GL000254v2_alt    330609 2 +   4827813 GT
s panTro5.chr6              29305625 2 + 175400573 GT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29551606 2 + 173848474 GT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5348867 2 +   6154872 GT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361633 2 + 122973662 GT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29305268 2 - 170955103 TA
i macFas5.chr4             C 0 C 0
s otoGar3.GL873742           1722743 1 -   2232465 -T
i otoGar3.GL873742         C 0 I 1
s dasNov3.JH570037            314808 1 -    859332 -T
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171601542 1234 - 171630274 I
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=116081.000000
s hg38.chr6_GL000254v2_alt    330611 51 +   4827813 AAAGACTTTTGATGGAGGAAGAAACAAAATATAAATTAAATTATTTGA-----ACA------
s panTro5.chr6              29305627 51 + 175400573 AAAGACTTTTGATGGAGGAAGAAACAAAATATAAATTAAATTATTTGA-----ACA------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29551608 51 + 173848474 AAAGACTTTTGATGGAGGAAGAAACAAAATATAAATTAAATTATTTGA-----ACA------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5348869 51 +   6154872 AAAGACTTTTGATGGAGGAAGAAACAAAATATAAATTAAATTATTTGA-----ACA------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361635 56 + 122973662 AAAGACTTTTGATGGAGGAAGAAGCTAAATATAAATTAAATTATTTGAAGAACACA------
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29305270 51 - 170955103 AAAGACTCTTCATGGAGAGAGAAATAAAATAGAAATTAGGTTATATGA-----ATA------
i macFas5.chr4             C 0 N 0
s calJac3.chr4             171602776 49 - 171630274 AAAGACTTC--ATGGAGAGAGAAATAAAATATGAATTAGGTTATATGA-----AGA------
i calJac3.chr4             I 1234 C 0
s otoGar3.GL873742           1722745 51 -   2232465 AAAGACTCTTGATAAAGAGAGAAATAAAATATGAATTAGATTATTTGA-----GGA------
i otoGar3.GL873742         I 1 C 0
s dasNov3.JH570037            314809 55 -    859332 AAAAACTCT--ATGGGGAAGGAAACaaaatataaattaaattatatGA-----AGAACTCCA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=-2330.000000
s hg38.chr6_GL000254v2_alt    330662 1 +   4827813 -C
s panTro5.chr6              29305678 1 + 175400573 -C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29551659 1 + 173848474 -C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5348920 1 +   6154872 -C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361691 1 + 122973662 -A
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             171602825 1 - 171630274 -C
i calJac3.chr4             C 0 I 10
s dasNov3.JH570037            314864 1 -    859332 A-
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1722796 0 -   2232465 C
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=13822.000000
s hg38.chr6_GL000254v2_alt    330663 16 +   4827813 ATTATTAAAGGCTTTA
s panTro5.chr6              29305679 16 + 175400573 ATTGTTAAAGGCTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29551660 16 + 173848474 ATTGTTAAAGGCTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5348921 16 +   6154872 ATTATTAAAGGCTTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361692 12 + 122973662 ATTATTAAAGTC----
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873742           1722796 16 -   2232465 ATGATTGGAGCCTTTA
i otoGar3.GL873742         C 0 I 2001
s dasNov3.JH570037            314865 16 -    859332 ATCCCTGAAGCAATTA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171602826 10 - 171630274 I
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=53943.000000
s hg38.chr6_GL000254v2_alt    330679 55 +   4827813 TTTGTTTTTAACTGATATACGTAATTGTTTAAGATGATGTAAAAATTTTCCAAGT
s panTro5.chr6              29305695 55 + 175400573 TTTGTTTTTAACTGATATACGTAATTGTTTAAGATGATGTAAAAATTTTCCAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29551676 55 + 173848474 TTTGTTTTTAACTGATATACGTAATTGTTTAAGATGATGTAAAAATTTTCCAAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5348937 55 +   6154872 TTTGTTTTTAACTGATATACGTAATTGTTTAAGATGATGTAAAAATTTTCCAGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361704 55 + 122973662 TTTGTTTTTAACTGATATACATAATTGTTTAAGATGATATAAAAATTTTCCAAGT
i nomLeu3.chr1a            C 0 C 0
s dasNov3.JH570037            314881 45 -    859332 ---------AAATCATAT-TAAAATTACTCAGAATGAATCAAGAATCTTACAGGT
i dasNov3.JH570037         C 0 I 9
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1722812 2001 -   2232465 I
e calJac3.chr4             171602826 10 - 171630274 I
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=199204.000000
s hg38.chr6_GL000254v2_alt    330734 224 +   4827813 TCGTTTACAATTTAAAGAGTTTGTATTGTTTAGAAGTCTGTAAAGGATGTGAGAGAAACACTGGGTAATTCTTCTTCATGTATTTTTATTTTCTTTTTTAtgtaaacaacataaatttattgcttacagttctggaggctgggaagttcaagatcaaggtaccagcaaatttcattacctggtaagcattcatttcttatggatggtgccttctgtgtgtcc------gg
s panTro5.chr6              29305750 224 + 175400573 TCGTTTACAATTTAAAGAGTTTGTATTGTTTAGAAGTCTGTAAAGGATGTGAGAGAAACACTGGGTAATTCTTCTTCATGTATTTTTATTTTCTTTTTTAtgtaaacaacataaatttattgcttacagttctggaggctgggaagttcaagatcaaggtaccagcaaatttcattacctggtaagcattcgtttcttatggatggtgccttctgtgtgtcc------gg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29551731 224 + 173848474 TCGTTTACAATTTAAAGAGTTTGTATTGTTTAGAAGTCTGTAAAGGATGTGAGAGAAACACTGGGTAATTCTTCTTCATGTATTTTTATTTTCTTTTTTAtgtaaacaacataaatttattgcttacagttctggaggctgggaagttcaagatcaaggtaccagcaaatttcattacctggtaagcattcgtttcttatggatggtgccttctgtgtgtcc------gg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5348992 230 +   6154872 TCGTTTACAATTTAAAGAGTTTGTATTGTTTAGAAGTCTGTAAAGGATGTGAGAGAAACACTGGGTAATTCTTCTTCATGTATTTTTATTTTCTTTTTTAtgtaaacaacataaatttattgcttacagttctggaggctgggaagttcaagatcaaggtaccagcaaatttcattacctggtaagcattcgtttcttatggatggtgccttctgtgtgtcctcacatgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361759 228 + 122973662 TCGTTTACAATTTCAAGAGTTTGTATTGTTTAGAAGTCTGTAAAGGATGTGAGAGAA--ACTGGGTAATTCTTCTTCATGTATTTTTATTTTCCTTTTTAtgtaaacaacataaatttattgcttacagttctggaggctgggaagttcaagatcaaggtactagcaaatttcattacctggcaagcatttgtttgttatgtatggtgccttccatgtgtcctcacatgg
i nomLeu3.chr1a            C 0 C 0
e dasNov3.JH570037            314926   9 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1722812 2001 -   2232465 I
e calJac3.chr4             171602826  10 - 171630274 I
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I
e manLeu1.NW_012104165v1     2181303 4675 +   2316924 I
e chlSab2.chr17             28474375 4453 -  71996105 I
e cerAty1.NW_012001495v1     2043300 4985 -   2157725 I
e macNem1.NW_012011356v1     2163085 4759 -   2996164 I
e rheMac8.chr4              29509568 4457 + 172585720 I

a score=212740.000000
s hg38.chr6_GL000254v2_alt    330958 42 +   4827813 tgtaaagggcaaaacaggctccctTTCCTCAAGCCTCTTGTC
s panTro5.chr6              29305974 42 + 175400573 tgtaaagggcaaaacaggctccctTTCCTCAAGCCTCTTGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29551955 42 + 173848474 tgtaaagggcaaaacaggctccctTTCCTCAAGCCTCTTGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5349222 42 +   6154872 tgtaaagggcaaaacaggctccctTTCCTCAAGCCTCTTGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361987 42 + 122973662 tgtaaagggcaaaacaggctccctTTCCTCAAGCCTCTTGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29514025 42 + 172585720 tgtaaagggcAAAACAGGCTCCCTTTCCTCAAGCCTCTTTTC
i rheMac8.chr4             I 4457 C 0
s macFas5.chr4              29175134 42 - 170955103 tgtAAAGGGCAAAACAGGCTCCCTTTCCTCAAGCCTCTTTTC
i macFas5.chr4             N 0 C 0
s macNem1.NW_012011356v1     2167844 42 -   2996164 tgtaaagggcAAAACAGGCTCCCTTTCCTCAAGCCTCTTTTC
i macNem1.NW_012011356v1   I 4759 C 0
s cerAty1.NW_012001495v1     2048285 42 -   2157725 tgtaaagggcAAAACAGGCTTCCTTTCCTCAAGCCTCTTTTC
i cerAty1.NW_012001495v1   I 4985 C 0
s chlSab2.chr17             28478828 42 -  71996105 tgtAAAGGGCAAAACAGGCTCCCTTTCCTCAAGCCTCTTTTC
i chlSab2.chr17            I 4453 C 0
s manLeu1.NW_012104165v1     2185978 42 +   2316924 tgtaaagggcAAAACAGGCTCCCTTTCCTCAAGCCTCTTTTC
i manLeu1.NW_012104165v1   I 4675 C 0
e dasNov3.JH570037            314926  9 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1722812 2001 -   2232465 I
e calJac3.chr4             171602826 10 - 171630274 I
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I

a score=12012.000000
s hg38.chr6_GL000254v2_alt    331000 2 +   4827813 AT
s panTro5.chr6              29306016 2 + 175400573 AT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29551997 2 + 173848474 AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5349264 2 +   6154872 AT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74362029 2 + 122973662 AT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29514067 2 + 172585720 AT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29175176 2 - 170955103 AT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2167886 2 -   2996164 AT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2048327 2 -   2157725 AT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28478870 2 -  71996105 AT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2186020 2 +   2316924 AT
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1724813 2 -   2232465 AT
i otoGar3.GL873742         I 2001 C 0
e dasNov3.JH570037            314926 9 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171602826 10 - 171630274 I
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I

a score=411782.000000
s hg38.chr6_GL000254v2_alt    331002 71 +   4827813 TAAAGCCTGTAAAAATGACAGTAAAAGTATTCAGAATGGGTTAAGCAATTTGACCGTCAGGAAATTCAATT
s panTro5.chr6              29306018 71 + 175400573 TAAAGCCTGTAAAAATTACAGTAAAAGTATTCAGAATGGGTTAAGCAATTTGACCGTCAGGAAATTCAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29551999 71 + 173848474 TAAAGCCTGTAAAAATTACAGTAAAAGTATTCAGAATGGGTTAAGCAATTTGACCGTCAGGAAATTCAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5349266 71 +   6154872 TAAAGCCTGTAAAAATTACAGTAAAAGTATTCAGAATGGGTTAAGCAATTTGACCGTCAGGAAATTCAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74362031 71 + 122973662 TAAAGCCTGTAAAAATTACAGCAAAAGTATTCAGAATGGGTTAAGCAATTTGACCGTCAGGAAATTCAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29514069 71 + 172585720 TAAAGCCTGTAAAAATTACAGAAAAAATATTCAGAATGGGTTAAGCAATTTGACAGTCAGGAAATTCAGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29175178 71 - 170955103 TAAAGCCTGTAAAAATTACAGAAAAAATATTCAGAATGGGTTAAGCAATTTGACAGTCAGGAAATTCAGTT
i macFas5.chr4             C 0 I 177
s macNem1.NW_012011356v1     2167888 71 -   2996164 TAAAGCCTGTAAAAATTACAGAAAAAATATTCAGAATGGGTTAAGCAATTTGACAGTCAGGAAATTCAGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2048329 71 -   2157725 TAAAGCCTGTAAAAATTACAGAAAAAATATTCAGAATGGGTTAAGCAATTTGACAGTCAGGAAATTCAGTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28478872 71 -  71996105 TAAAGCCTGTAAAAATTACAGAAAAAATATTCAGAATGGGTTAAGCAATTTGACAGTCAGGAAATTCAGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2186022 71 +   2316924 TAAAGCCTGTAAAAATTACAGAAAAAATATTCAGAATGGGTTAAGCAATTTGACAGTCAGGAAATTCAGTT
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171602836 71 - 171630274 TGAAACCTTTAAAAATCACACTGAACGTATTCAGCATGAATTAAGCATTTTTCTACTAAAAAAATGTAGTT
i calJac3.chr4             I 10 I 1
s otoGar3.GL873742           1724815 68 -   2232465 TGGAGCCTTTAAAAATCACAATAAAA-TATTCAGAATGGATCAAGCATTTC--TAGCTAAAAAATGCAGTT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            314926  9 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I

a score=440.000000
s hg38.chr6_GL000254v2_alt    331073 1 +   4827813 -G
s panTro5.chr6              29306089 1 + 175400573 -G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29552070 1 + 173848474 -G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5349337 1 +   6154872 -G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74362102 1 + 122973662 -G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29514140 1 + 172585720 -G
i rheMac8.chr4             C 0 I 172
s macFas5.chr4              29175426 1 - 170955103 -G
i macFas5.chr4             I 177 C 0
s macNem1.NW_012011356v1     2167959 1 -   2996164 -G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2048400 1 -   2157725 -G
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28478943 1 -  71996105 -G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2186093 1 +   2316924 -G
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1724883 1 -   2232465 T-
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            314926 9 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171602907 1 - 171630274 I
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I

a score=18366.000000
s hg38.chr6_GL000254v2_alt    331074 3 +   4827813 AAA
s panTro5.chr6              29306090 3 + 175400573 AAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29552071 3 + 173848474 AAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5349338 3 +   6154872 AAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74362103 3 + 122973662 AAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29514313 3 + 172585720 AAA
i rheMac8.chr4             I 172 C 0
s macFas5.chr4              29175427 3 - 170955103 AAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2167960 3 -   2996164 AAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2048401 3 -   2157725 AAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28478944 3 -  71996105 AAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2186094 3 +   2316924 AAA
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171602908 3 - 171630274 GAA
i calJac3.chr4             I 1 C 0
s otoGar3.GL873742           1724884 3 -   2232465 AAA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            314926 9 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I

a score=926910.000000
s hg38.chr6_GL000254v2_alt    331077 153 +   4827813 AGTGAGG-TTCAAAACCTTCCTCAGAAAGTTAAAG----T----TCTAAATTGTATTGAGAAAATACAATAAAGATTCACAGAATATTTATATTAGAATGAATTAA----TTAAATACAGAACATTTTAAAGGCAACTAAAAAGATCAGCCATGCTCATTAAGTAA
s panTro5.chr6              29306093 153 + 175400573 AGTGAGG-TTCAAAACCTTCCTCAGAAAGTTAAAG----T----TCTAAATTGTATTGAGAAAATACAATAAAGATTCACAGAATATTTATATTAGAATGAATTAA----TTAAATACAGAACATTTTAAAGGCAACTAAAAAGATCAGCCATGCACATTAAGTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29552074 153 + 173848474 AGTGAGG-TTCAAAACCTTCCTCAGAAAGTTAAAG----T----TCTAAATTGTATTGAGAAAATACAATAAAGATTCACAGAATATTTATATTAGAATGAATTAA----TTAAATACAGAACATTTTAAAGGCAACTAAAAAGATCAGCCATGCACATTAAGTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5349341 153 +   6154872 AGTGAGG-TTCAAAACCTTCCTCAGAAAGTTACAG----T----TCTAAATTGTATTGAGAAAATACAATAAAGATTCACAGAATATTTATATTAGAATGAATTAA----TTAAATACAGAACATTTTAAAGGCAACTAAAAAGATCAGCCATGCACATTAAGTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74362106 153 + 122973662 AGTGAGG-TTCAAAACCTTCCTCAGAAAGTTAAAG----T----TCTAAATTGTATTGAGAAAATACAATAAAGATTCACAGAATATTTATATTAGAATGAATTAA----TTAAATACAGAACATTTTAAAGGCAACTAAAAAAATCAGCCATGCACATTAAGTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29514316 153 + 172585720 AGTGAGG-TTTAAAACCTTCCTCAGAAAGTTAAAG----T----TCTAAATTGTATTGAGAAAATAGAATAAAGATTCACAGAATATTTACATTAGAATGAATTAA----TTAAGTACAGAACATTTTAAAGGCAACTAAAAAGATCAACCATGCATATTAAGTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29175430 153 - 170955103 AGTGAGG-TTTAAAACCTTCCTCAGAAAGTTAAAG----T----TCTAAATTGTATTGAGAAAATAGAATAAAGATTCACAGAATAATTACATTAGAATGAATTAA----TTAAGTACAGAACATTTTAAAGGCAACTAAAAAGATCAACCATGCATATTAAGTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2167963 153 -   2996164 AGTGAGG-TTTAAAACCTTCCTCAGAAAGTTAAAG----T----TCTAAATTGTATTGagaaaatagaataaagattcacagaatatttacattagaatGAATTAA----TTAAGTACAGAACATTTTAAAGGCAACTAAAAAGATCAACCATGCATATTAAGTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2048404 153 -   2157725 AGTGAGG-TTTAAAACCTTCCTCAGAAAGTTAAAG----T----TCTAAATTGTATTGagaaaatagaataaagattcacagaatatttacattagaatGAATTAA----TTAAGTACAGAACATTTTAAAGGCAACTAAAAAGATCAACCATGCATATTAAGTAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28478947 153 -  71996105 AGTGAGG-TTTAAAACCTTCCTCAGAAAGTTAAAG----T----TCTAAATTGTATTGagaaaatagaataaagattcacagaatatttacattagaatGAATTAA----TTAAGTACAGAACATTTTAAAGGCAACTAAAAAGATCAACCATGCATATTAAGTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2186097 153 +   2316924 AGTGAGG-TTTAAAACCTTCCTCAGAAAGTTAAAG----T----TCTAAATTGTATTGAGAAAATAGAATAAAGATTCACAGAATATTTACATTAGAATGAATTAA----TTAAGTACAGAACATTTTAAAGGCAACTAAAAAGATCAACCATGCATATTAAGTAA
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171602911 129 - 171630274 AGTAAGG-TTCAGAACATTTAGCCAAATGTTGAAG----TAATCTCTAAACTGTATTGGGAAAATGGAAT--AGTTTCATAGATTATTTGTATTAGAAAAATTTAA----TTAGA-----AAAATTTCAA---------------------ATACACATTTAGTGA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1724887 134 -   2232465 AGTCAAA-TTCAAGACCTTCCATGGCATGTTTAAGAAATT----TTAAAATTTTATTGAGACAATAGAATAAA-TTTTATGGATTATTTGTATCAAAAGGAATTAA----TTACTTAAAGA----------------TAGAAAGTT------TTCATATTAAGTGA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            314935 157 -    859332 AATGAGGTTTCAAAATCTTCACCAGAAAATTAGT-----T----TCTAATCTGTATTGAGAAAATTCTGTAAAACTTCACAGATTACTTATATCACAAGAAATTAATTACTTAAATATACAACATTTCCAAAGCAGATGAGAAGATCAGCCACGCACATGGAGTGA
i dasNov3.JH570037         I 9 I 2
e canFam3.chr35             26123994 2185 +  26524999 I
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I

a score=79344.000000
s hg38.chr6_GL000254v2_alt    331230 16 +   4827813 CAGATACCTACAGAA-------A
s panTro5.chr6              29306246 16 + 175400573 CAGATACCTACAGAA-------A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29552227 16 + 173848474 CAGATACCTACAGAA-------A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5349494 16 +   6154872 CAGATACCTACAGAA-------A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74362259 16 + 122973662 CAGATACCTACAGAA-------A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29514469 23 + 172585720 CAGATACCTACAGAAAAAAGCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29175583 23 - 170955103 CAGATACCTACAGAAAAAAGCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2168116 23 -   2996164 CAGATACCTACAGAAAAAAGCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2048557 23 -   2157725 CAGATACCTACAGAAAAAAGCCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28479100 23 -  71996105 CAGATACCTGCAGAAAAAAGCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2186250 23 +   2316924 CAGATACCTACAGAAAAAAGCCA
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171603040 12 - 171630274 TAGATA----CAGAA-------A
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1725021 16 -   2232465 TAGGTCCTAACAGAA-------A
i otoGar3.GL873742         C 0 I 6
e dasNov3.JH570037            315092  2 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I

a score=219970.000000
s hg38.chr6_GL000254v2_alt    331246 45 +   4827813 ATGTCTGTCTTTGTCTTGCATTTAAAAATTGATATATCATAGTTA
s panTro5.chr6              29306262 45 + 175400573 ATGTCTGTCTTTGTCTTGCATTTTAAAATTGATATATCATAGTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29552243 45 + 173848474 ATGTCTGTCTTTGTCTTGCATTTTAAAATTGATATATCATAGTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5349510 45 +   6154872 ATGTCTGTCTTTGTCTTGCATTTTAAAATTGATATATCATAGTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74362275 45 + 122973662 ATGTCTGTCTTTGTCTTGCATTTTAAAATTGATATATAATAGTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29514492 45 + 172585720 AAGTCTGTCTTTGTCTTGCATTTTAAAATTGATATATCATAGTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29175606 45 - 170955103 AAGTCTGTCTTTGTCTTGCATTTTAAAATTGATATATCATAGTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2168139 45 -   2996164 AAGTCTGTCTTTGTCTTGCATTTTAAAATTGATATATCATAGTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2048580 45 -   2157725 AAGTCTGTCTTTGTCTTGCATTTTAAAATTGATATATCATAGTTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28479123 45 -  71996105 AAGTCTGTCTTTGTCTTGCATTTTAAAATTGATATATCATAGTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2186273 45 +   2316924 AAGTCTGTCTTTGTCTTGCATTTTAAAATTGATATATCATAGTTA
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            315092  2 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725037  6 -   2232465 I
e calJac3.chr4             171603052  0 - 171630274 C
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I

a score=609665.000000
s hg38.chr6_GL000254v2_alt    331291 679 +   4827813 TACATAGGCCAAACttctttttttatttattatactttaagttttagagtacatgtgcacaacgtgcaggtctgttacatatgtatacatgtgccatgttggtgtgctgcacccagtaactcgtcatttaacattagatataactcctaacgctatccctcccccctccccccaccccacaacaggccctggcatgtgatgttccccttcctgtgaccatgtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttttgtccttgtgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggaaatgaactcatcattttttatggctgcatagtattccatggtgtatatatgccatattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtactgcaataaacatgcatgtgcatgtgtctttacagcagcatgatttataatcctttgggtatatactcagtaatgggatagctgggtcaaatggtatttctagttctagatgcctgaggaatcgccacaccaacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgt
s panTro5.chr6              29306307 679 + 175400573 TACATAGGCCAAAAttctttttttatttattatactttaagttttagagtaaatgtgcacaacgtgcaggtctgttacatatgtatacatgtgccatgttggtgtgctgcacccagtaactcgtcatttaacattagatatatctcctaacgctatccctcccccctccccccaccccacaacaggccctggcgtgtgatgttccccttcctgtgaccatgtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttatttgtccttgtgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggaaatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccatattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtaccgcaataaacatgcatgtgcatgtgtctttacagcagcatgatttataatcctttgggtatatactcagtaatgggatagctgggtcaaattgtatttctagttctagatccctgaggaatcgccacaccgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacccgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29552288 678 + 173848474 TACATAGGCCAAAAttc-ttttttatttattatactttaagttttagagtaaatgtgcacaacgtgcaggtctgttacatatgtatacatgtgccatgttggtgtgctgcacccagtaactcgtcatttaacattagatatatctcctaacgctatccctcccccctccccccaccccacaacaggccctggcgtgtgatgttccccttcctgtgaccatgtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttatttgtccttgtgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggaaatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccatattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtaccgcaataaacatgcatgtgcatgtgtctttacagcagcatgatttataatcctttgggtatatactcagtaatgggatagctgggtcaaattgtatttctagttctagatccctgaggaatcaccacaccgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacccgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5349555 679 +   6154872 TACATAGGCCAAAAttctttttttatttattatactttaagttttagagtacatgtgcacaacgtgcaggtttgttacatatgtatacatgtgccatgttggtatgctgcacccagtaactcgtcatttaacattagacatatctcctaatgctatccctcccccctccccccaccccacaacaggccctggcgtgtgatgttccccttcctgtgaccatgtgttctcattgttcagttcccacctatgagtgagaacatgcggtgtttggttttttgcccttgtgatagtttgctgagaatgatggtttccagcttcttccatgtccctacaaaggaaatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctgttgtgaatagtaccacaataaacatgcatgtgcatgtgtctttacagcagcatgatttataatcctttgggtatatactcagtaatgggatagctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74362320 678 + 122973662 TACATAGGCCAAAATTCttttttttttaattatactttaagttttagggtacatgtgcacaacgtgcaggtctgttacatatgtatacatgtgccatgttggtgtgctgcacccagtaactcgtcatttaacattaggtatatctcctaatgctatccctcccccctccccccaccccacaacaggccctggcgtgtgatgttccccttcctgtggccatgtgttctcattgttcagttcccacctatgagtgagaacatccggtgtttggttttttgcccttgtgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcatcttttatggctgcatagtattccatggtgtatatgtgccacattttctttat-cagtctatcatttttggacatgtgggttggttccaactctttgctattgtgaatagtgctgcagtaaacatacgtgtgcatgtgtctttgcagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgt
i nomLeu3.chr1a            C 0 C 0
e dasNov3.JH570037            315092   2 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725037   6 -   2232465 I
e calJac3.chr4             171603052   0 - 171630274 C
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I
e manLeu1.NW_012104165v1     2186318   0 +   2316924 C
e chlSab2.chr17             28479168   0 -  71996105 C
e cerAty1.NW_012001495v1     2048625   0 -   2157725 C
e macNem1.NW_012011356v1     2168184   0 -   2996164 C
e macFas5.chr4              29175651   0 - 170955103 C
e rheMac8.chr4              29514537   0 + 172585720 C

a score=1370.000000
s hg38.chr6_GL000254v2_alt    331970 16 +   4827813 tgtttcctgacttttt
s nomLeu3.chr1a             74362998 16 + 122973662 tgtttcttgacttttt
i nomLeu3.chr1a            C 0 I 2183
e dasNov3.JH570037            315092  2 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725037  6 -   2232465 I
e calJac3.chr4             171603052  0 - 171630274 C
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I
e manLeu1.NW_012104165v1     2186318  0 +   2316924 C
e chlSab2.chr17             28479168  0 -  71996105 C
e cerAty1.NW_012001495v1     2048625  0 -   2157725 C
e macNem1.NW_012011356v1     2168184  0 -   2996164 C
e macFas5.chr4              29175651  0 - 170955103 C
e rheMac8.chr4              29514537  0 + 172585720 C
e gorGor5.CYUI01015250v1     5350234  0 +   6154872 C
e panPan2.chr6              29552966  0 + 173848474 C
e panTro5.chr6              29306986  0 + 175400573 C

a score=0.000000
s hg38.chr6_GL000254v2_alt    331986 273 +   4827813 tttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccacctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgctaccacgcccggctaattttttgtatttttagtagagacggggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc
e dasNov3.JH570037            315092   2 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725037   6 -   2232465 I
e calJac3.chr4             171603052   0 - 171630274 C
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I
e manLeu1.NW_012104165v1     2186318   0 +   2316924 C
e chlSab2.chr17             28479168   0 -  71996105 C
e cerAty1.NW_012001495v1     2048625   0 -   2157725 C
e macNem1.NW_012011356v1     2168184   0 -   2996164 C
e macFas5.chr4              29175651   0 - 170955103 C
e rheMac8.chr4              29514537   0 + 172585720 C
e nomLeu3.chr1a             74363014 2183 + 122973662 I
e gorGor5.CYUI01015250v1     5350234   0 +   6154872 C
e panPan2.chr6              29552966   0 + 173848474 C
e panTro5.chr6              29306986   0 + 175400573 C

a score=762378.000000
s hg38.chr6_GL000254v2_alt    332259 1404 +   4827813 tgtttcctgactttttaatgatcgtcattctaactggtgtgaaatggtatctcactgtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgtcttttggctgcataaatgtcttgttttgagaagtgtctgttcatgtccttcacccactttttgatggggttgtttgtttttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgagtaggttgcaaaaattttctcccattctgtaggttgcctattgactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggttttgttctagggtttttctggttttaggtctaacattgaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatccagtttcagctttctccatatggctagccagttttcccagcaccatttattaaatagggaatcctttccccattgcttatttttgtcagatttgtcaaagattagatagctgtagatatgtggcgttatttctgagggctctgttctgttccattggtctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagtgtgatgcctccagctttgttcttttggcttaggattgacttggcaatgtgggctcttttttggttccatatgaactttaaagtacttttttccaattctgtgaagaaagtcattggtagcttgatggggatggcgctgaatctataaattacctttggcagtatggccattttcacaatattgattctccctacacatgagcatggaatgttcttccatttgtatcctcttttatttcattgagcagtggtctgtagttctccttgaagaggtccttcacatcc-ttgtaagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgtctgttattggtgtataagaatacttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattttgggctgagacgatggggttttctagatatacaatcatgtcatctgcaagcaggggcactttgacttcctctttttctaattgaataccctttatttctttctcctgcctgattgccctggccagaacttccaacactatgttgaataggagtggtgagagagggcatccctgt
s panTro5.chr6              29306986 1397 + 175400573 tgtttcctgactttttaatgatcgccattctaactggtgtgaaatggtatctcactgtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgtcttttggctgcataaatgtcttcttttgagaagtgtctgttcatgtccttcgcccactttttgatggggttgttt----ttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgagtaggttgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccgttgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaattgtattgcctaggttttgttctagggtttttctggttttaggtctaacattgaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatccagtttcagctttctccatatggctagccagttttcccagcaccatttattaaatagggaatcctttccccattgcttatttttgtcagatttgtcaaagatgagatagttgtagatatgcggcgttatttctgagggctctgttctgttccattggtctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagtgtgatgcctccagctttgttcttttggcttaggattgacttggcaatgtgggctcttttttggttccatatgaaatttaaagtaattttttccaattctgtgaagaaagtcattggtagcttgatggggatgttgctgaatctataaattacctttggcagtatggccattttcacaatattgattcttcctacacatgagcatggaatgttcttccatttgtatcctcttttatttcattgagcagtggtctgtagttctccttgaagaggtccttcacatcccttgtaagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgt----ctgttattggtgtataagaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattttgggttgagacaatggggttttctagatatacaatcatgtcatctgcaagcagggacactttgacttcctctttttctaattgaataccctttatttctttctcctgcctgattgccctggccagaacttccaacactatgttgaataggagtggtgagagagggcatccctgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29552966 1399 + 173848474 tgtttcctgactttttaatgatcgccattctaactggtgtgaaatggtatctcactgtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgtcttttggctgcataaatgtcttcttttgagaagtgtctgttcatgtccttcgcccactttttgatggggttgtttgt--tttttctgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgagtaggttgcaaaaattttctcccattctgtaggttgcctgttcactctgatggtagtttcttttgctgtacagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccgttgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaattgtattgcctaggttttgttctagggtttttctggttttaggtctaacattgaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatccagtttcaggtttctacatatggctagccagttttcccagcaccatttattaaatagagaatcctttccccattgcttatttttgtcagatttgtcaaagatgagatagttgtagatatgcggcgttatttctgagggctctgttctgttccattggtctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagtgtgatgcctccagctttgttcttttggcttaggattgacttggcaatgtgggctcttttttggttccatatgaaatttaaagtaattttttccaattctgtgaagaaagtcattggtagcttgatggggatggtgctgaatctataaattacctttggcagtatggccattttcacaatattaattcttcctacacatgagcatggaatgttcttccatttgtatcctcttttatttcattgagcagtggtctgtagttctccttgaagaggtccttcacattccttgtaagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgt----ctgttattggtgtataagaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattttgggctgagacgatggggttttctagatatacaatcatgtcatctgcaagcagggacactttgacttcctctttttctaattgaataccctttatttctttctcctgcctgattgccctggccagaacttccaacactatgttgaataggagtggtgagagagggcatccctgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5350234 1405 +   6154872 tgtttcctgactttttaatgattgccattctaactggtgtgaaatggtatctcactgtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgtcttttggctgcataaatgtcttcttttgagaagtgtccgttcatgtccttcacccactttttgatggtgttgtttgtttttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgagtagcttgcaaaaattttctcccattctgtaagttgcctgttcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtccgttttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcgtgaatggtattgcctaggttttgttctagggtttttctggttttaggtctaacattgaagtctttaatccatcttgaattaatttttgtataacgtttaaggaagggatccagtttcagctttctccatatggctagccagttttcccagcagcatttattaaatagggaatcctttccccattgcttatttttgtcatatttgtcaaagattagatagttgtagatatgtggcattatttctgagggctctgttctgttccattggtctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagtgtgatgtctccagctttgttcttttgggttaggattggcttggcaatgcgggctcttttttggttccatatgaactttaaagtaattttttccaattctgtgaagaaagtcattggtagcttgatggggatggtgctgaatctataaattacctttggcagtatggccattttcacgatattgattcttcctacacatgagcatggaatgttcttccatttgtatcctcttttatttcattgagcagtggtctgtagttctccttgaagaggtccttcacatcccttgtaagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttccctcatgatttggctctctgtttgtctgttattggtgtataagaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattttgggctgagacgatggggttttctagatatacaatcatgtcatctgcaagcagggacactttgacttcctctttttctaattgaataccctttatttctttctcctgcctgattgccctgggcagaacttccaacgctatgttgaataggagtggtgagagagggcatccctgt
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570037            315092    2 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725037    6 -   2232465 I
e calJac3.chr4             171603052    0 - 171630274 C
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I
e manLeu1.NW_012104165v1     2186318    0 +   2316924 C
e chlSab2.chr17             28479168    0 -  71996105 C
e cerAty1.NW_012001495v1     2048625    0 -   2157725 C
e macNem1.NW_012011356v1     2168184    0 -   2996164 C
e macFas5.chr4              29175651    0 - 170955103 C
e rheMac8.chr4              29514537    0 + 172585720 C
e nomLeu3.chr1a             74363014 2183 + 122973662 I

a score=4718.000000
s hg38.chr6_GL000254v2_alt    333663 6 +   4827813 cttgtg
s panTro5.chr6              29308383 6 + 175400573 cttgtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29554365 6 + 173848474 cttgtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5351639 6 +   6154872 cttgtg
i gorGor5.CYUI01015250v1   C 0 C 0
s dasNov3.JH570037            315094 6 -    859332 CTTGCA
i dasNov3.JH570037         I 2 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725037 6 -   2232465 I
e calJac3.chr4             171603052 0 - 171630274 C
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I
e manLeu1.NW_012104165v1     2186318 0 +   2316924 C
e chlSab2.chr17             28479168 0 -  71996105 C
e cerAty1.NW_012001495v1     2048625 0 -   2157725 C
e macNem1.NW_012011356v1     2168184 0 -   2996164 C
e macFas5.chr4              29175651 0 - 170955103 C
e rheMac8.chr4              29514537 0 + 172585720 C
e nomLeu3.chr1a             74363014 2183 + 122973662 I

a score=55638.000000
s hg38.chr6_GL000254v2_alt    333669 10 +   4827813 TACATAGGCC
s panTro5.chr6              29308389 10 + 175400573 TACATAGGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29554371 10 + 173848474 TACATAGGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5351645 10 +   6154872 TACATAGGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74365197 10 + 122973662 tgCATAGGCC
i nomLeu3.chr1a            I 2183 C 0
s rheMac8.chr4              29514537 10 + 172585720 TACATAGGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29175651 10 - 170955103 TACATAGGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2168184 10 -   2996164 TACATAGGCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2048625 10 -   2157725 TACATAGGCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28479168 10 -  71996105 TACATAGGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2186318 10 +   2316924 TACATAGGCC
i manLeu1.NW_012104165v1   C 0 C 0
s dasNov3.JH570037            315100 10 -    859332 GAAATAAGCC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725037  6 -   2232465 I
e calJac3.chr4             171603052  0 - 171630274 C
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I

a score=7098.000000
s hg38.chr6_GL000254v2_alt    333679 1 +   4827813 A
s panTro5.chr6              29308399 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29554381 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5351655 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74365207 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29514547 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29175661 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2168194 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2048635 1 -   2157725 A
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28479178 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2186328 1 +   2316924 A
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171603052 1 - 171630274 A
i calJac3.chr4             C 0 C 0
s dasNov3.JH570037            315110 1 -    859332 A
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725037 6 -   2232465 I
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I

a score=1170911.000000
s hg38.chr6_GL000254v2_alt    333680 203 +   4827813 AAATTCTTAAAGAAAAATTGGAAAAAATTACTTGTTCCTATCAAAGACTCACTATTTCCCATATTTAAAA-AGCTTATAGTTATTG----ACTTATAGTTCAGTTGAACCTCAATGAGG-T-TCAATGAGTTAGGAAAA-TCCATATGAAAGAC-cagagatcagctaa-ttttccccacaagagccagatggaaaatagttcaggttttgca
s panTro5.chr6              29308400 203 + 175400573 AAATTCTTAAAGAAAAATTGGAAAAAATTACTTGTTCCTATCAAAGACTCACTATTTCCCATATTTAAAA-AGCTTATAGTTGTTG----ACTTACAGTTCAGTTGAACCTCAATGAGG-T-TCAATGAGTTAGGAAAA-TCCATAGGAAAGAC-cagagatcagcgaa-ttttccccacaagagccagatggaaaatagttcaggttttgca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29554382 203 + 173848474 AAATTCTTAAAGAAAAATTGGAAAAAATTACTTGTTCCTATCAAAGACTCACTATTTCCCATATTTAAAA-AGCTTATAGTTATTG----ACTTATAGTTCAGTTGAACCTCAATGAGG-T-TCAATGAGTTAGGAAAA-TCCATAGGAAAGAC-cagagatcagcgaa-ttttccccacaagagccagatggaaaatagttcaggttttgca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5351656 203 +   6154872 AAATTCTTAAAGAAAAATTGGAAAAAATTACTTGTTCCTATCAAAGACTCACTATTTCCCATATTTAAAA-AGCTTATAGTTATTG----ACTTATAGTTCAGCTGAACCTCAATGAGG-T-TCAATGAGTTAGGAAAA-TCCATATGAAAGAC-cagagatcagctaa-ttttccccacaagagccagatggaaaatagttcaggttttgca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74365208 203 + 122973662 AAATTCTTAAAGAAAAATTGGAAAAAATTACTTGTTCCTATCAAAGACTCGCTATTTCCCATATTTAAAA-AGCTTATAGTTATTG----ACTTATAGTTCAGTCAAACCTCAGTGAGG-T-TCATTGAGTTAAGAAAA-TCCATATGAAAGAC-cagagatcagctaa-ttttccccacaagagccagatagaaaataatttaggttttgca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29514548 203 + 172585720 AAATTCTTAAAGAAAAATTGGTAAAAATTACTTATTCCTATCAAAGACTCACTATTTCCCATATTTAAAA-AGCTTATAGTTATGG----ACTTATAGTTCGATCGAACCTCAATGAGG-T-TCAATGAGTTAAGAAAA-TCCATATGAAAGAC-cagagatcagctaa-ttttccccccaagagccagatagaaaatattttacgttttgca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29175662 203 - 170955103 AAATTCTTAAAGAAAAATTGGTAAAAATTACTTATTCCTATCAAAGACTCACTATTTCCCATATTTAAAA-AGCTTATAGTTATGG----ACTTATAGTTCGATCGAACCTCAATGAGG-T-TCAATGAGTTAAGAAAA-TCCATATGAAAGAC-cagagatcagctaa-ttttccccccaagagccagatagaaaatattttacgttttgca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2168195 203 -   2996164 AAATTCTTAAAGAAAAATTGGTAAAAATTACTTATTCCTATCAAAGACTCACTATTTCCCATATTTAAAA-AGCTTATAGTTATGG----ACTTATAGTTCGATCGAACCTCAATGAGG-T-TCAATGAGTTAAGAAAA-TCCATATGAAAGAC-cagagatcagctaa-ttttccccccaagagccagatagaaaatattttacgttttgca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2048636 203 -   2157725 AAATTCTTAAAGAAAAATTGGTAAAAATTACTTGTTCCTATCAAAGACTCACTATTTCCCATATTTAAAA-AGCTTTTAGTTATGG----ACTTATAGTTCGATCGAACCTCAGTGAGG-T-TCAATGAGTTAAGAAAA-TCCATATGAAAGAC-cagagatcagctaa-ttttccccccaagagccagatagaaaatattttacgttttgca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28479179 203 -  71996105 AAATTCTTAAAGAAAAATTGGTAAAAATTACTTGTTCCTATCAAAGACTCACTATTTCCCATATTTAAAA-AGCTTATAGTTATGG----ACTTATAGTTCGATTGAACCTCAATGAGG-T-TCAATGAGTTAAGAAAA-TCCATATGAAAGAC-cagagatcagctaa-ttttccccccaagagtcagatagaaaatattttatgttttgca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2186329 203 +   2316924 AAATTCTTAAAGAACAATTGGTAAAAATTACTTGTTCCTATCAAAGACTCACTATTTCCCATATTTAAAA-AGCTTATAGTTATGG----ACTTATAGTTCGATCAAACCTCAATGAGG-T-TCAATGAGTTAAGAAAA-TCCATATGAAAGAC-cagagatcagctaa-ttttccccccaagagccagatagaaaatattttacgttttgca
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171603053 196 - 171630274 AAATTCTT-AGGAAGAAATGAAAGAACTGACTTGTTCTTACCAAAG--CCATGATTTCCCTCATTAAAAA-GGCTTGCAATAATTG----ATTGACAGTTAAGTTGA--CTGAAGGAAA-TCTCATTGATTTAAG-AAA-TCTATATGAGAGTT-CTGATGGCAG-Tat-tttttctatgaaaagctacatagtctgta-ttaaggctttgta
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1725043 202 -   2232465 AAATTCTTAGAGAAAGATTAAAAAAGATTATTTATGCCTAGCAAAGA--CATTATTTGCCACACTTAAAACAGTTTATGATAACTGATACATACATAGTTTAGTTG--CCTGAAAGAAACT-TTAATGGGGTAAGAAAA-TCCAT--GAAAGACTTAGACACCAACaat-ttttcctgtaaaaagccagatagtcaata--ttagactttgcA
i otoGar3.GL873742         I 6 I 32185
s dasNov3.JH570037            315111 190 -    859332 AAATTCTTAGCGAAAAATTGGGAAGAATCACTTGTCCCTATCA----------ATTTCCCACGAGAAAGT-AGTTCATAATAATTG----ATTTA-ATTTCAGTCTG--CTGAAAGACA-TGTCAAAGACTTAAGAAAATTTCAT---TAAGAC-cagagattagaaaactttttttataaagggccagataataaatattttaggatttgtt
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I

a score=158486.000000
s hg38.chr6_GL000254v2_alt    333883 36 +   4827813 ggcc---aggaagcaaaatttaaat-attatgaaataatt-
s panTro5.chr6              29308603 36 + 175400573 ggcc---aagaagcaaaatttaaat-attatgaaataatt-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29554585 36 + 173848474 ggcc---aagaagcaaaatttaaat-attatgaaataatt-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5351859 36 +   6154872 ggcc---aagaagcaaaatttaaat-attatgaaataatt-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74365411 35 + 122973662 ggcc---aagaagcaaaatttaaat-attatgaaagtac--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29514751 35 + 172585720 ggcc---aagaagcaaaatttaaat-attacaaaagtac--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29175865 35 - 170955103 ggcc---aagaagcaaaatttaaat-attacaaaagtac--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2168398 35 -   2996164 ggcc---aagaagcaaaatttaaat-attacaaaagtac--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2048839 35 -   2157725 ggcc---aagaagcaaaatttaaat-attacaaaagtac--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28479382 38 -  71996105 ggccaagaagaagcaaaatttaaat-attacaaaagtac--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2186532 35 +   2316924 ggcc---aagaagcaaaatttaaat-attacaaaagtac--
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171603249 35 - 171630274 aacc---aagatacaaaattggagt-attatgaaagtac--
i calJac3.chr4             C 0 C 0
s dasNov3.JH570037            315301 37 -    859332 gacc---aagaagaaaaaATgatatcagtatgacctcat-t
i dasNov3.JH570037         C 0 I 19697
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725245 32185 -   2232465 I
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I

a score=982461.000000
s hg38.chr6_GL000254v2_alt    333919 272 +   4827813 aaatattaaatattatgaaaataagtaaataaaatttaaatattatgaaactataaatattaaatattaGGCAACAAGACAGAA---AAATTCCCACATAATGTTCTATtggcta---------aaaaaaaa--aaa----ccctgacaatagtgaatgctagaaaaaaaatgcagaacaaggggaactcttatttattactgatgagaatgcaaaatgttaaaatcactttgaggaaccacttggcagtttcttataaagcttaaaataaactcaacatatgacccaac
s panTro5.chr6              29308639 272 + 175400573 aaatattaaatattatgaaaataagtaaataaaatttaaatattatgaaattataaatatTAAATATTAGGCAACAAGACAGAA---AAATTCCCACATAATGTTCTATtggcta---------aaaaaaaa--aaa----ccctgacaatagtaaatgctagaaaaaaaatgcagaacaaggggaactcttatttattactgatgagaatgcaaaatgttaaaatcactttgaggaaccacttggcagtttcttataaagcttaaaataaactcagcatatgacccaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29554621 271 + 173848474 aaatattaaatattatgaaaataagtaaataaaatttaaatattatgaaattataaatatTAAATATTAGGCAACAAGACAGAA---AAATTCCCACATAATGTTCTACtggct----------aaaaaaaa--aaa----ccctgacaatagtaaatgctagaaaaaaaatgcagaacaaggggaactcttatttattactgatgagaatgcaaaatgttaaaatcactttgaggaaccacttggcagtttcttataaagcttaaaataaactcagcatatgacccaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5351895 272 +   6154872 aaatattaaatattatgaaaataagtaaataaaatttaaatattatgaaattataaatatTAAATATTAGCCAACAAGACAGAA---AAATTCCCACATAATGTTCTATtggcta---------aaaaataa--aaa----ccctgacaatagtaaatgctagaaaaaaaatgcagaacaaggggaactcttatttattactgatgagaatgcaaaatgttaaaatcactttgaggaaccacttggcagtttcttatgaagcttaaaataaactcaacatatggcccaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74365446 209 + 122973662 ------------------------------------------------------------------ttaggcaacaagacagaa---aaattcccacatgatgttctattggctaaaat-----aaaaaAAa--aaa----ccctgacaatagtaaatgctag-aaaaaaatgcagagcgaggggaactcttatttattactgatgggaatgcaaaatgttaaaatcactttgaagaaacacttggcagtttcttataaagcttaaaataaactcaccatatgatccaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29514786 213 + 172585720 ------------------------------------------------------------------ttaggcaacaagacagaa---aaattcccacgtagtgttctattggctaaaattaaaaaAAAAAaa--aaa----ccctgacaatagtaaatgctag--aaaaaatgcagagcaaaggggactcttatttattactgatggaaatgcaaaatgttacaatcactttgaagaaccacttggcagtttcttataaagcttataataaactcaccatatgatccaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29175900 213 - 170955103 ------------------------------------------------------------------ttaggcaacaagacagaa---aaattcccacgtagtgttctattggctaaaattaaaaaAAAAAaa--aaa----ccctgacaatagtaaatgctag--aaaaaatgcagagcaaaggggactcttatttattactgatggaaatgcaaaatgttacaatcactttgaagaaccacttggcagtttcttataaagcttataataaactcaccatatgatccaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2168433 212 -   2996164 ------------------------------------------------------------------ttaggcaacaagacagaa---aaattcccacgtagtgttctattggctaaaatt-aaaaaAAAAaa--aaa----ccctgacaatagtaaatgctag--aaaaaatgcagagcaaaggggactcttatttattactgatggaaatgcaaaatgttacaatcactttgaagaaccacttggcagtttcttataaagcttataataaactcaccatatgatccaac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2048874 215 -   2157725 ------------------------------------------------------------------ttaggcaacaagacagaa---aaattcccacgtagtgttctattggctaaaattaaaaaAAAAAAAACaaa----ccctgacaatagtaaatgctag--aaaaaatgcagagcaaaggggactcttatttattactgatggaaatgcaaaatgttacaatcactttgaagaaccacttggcagtttcttataaagcttataataaactcaccatatgatccaac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28479420 217 -  71996105 ------------------------------------------------------------------ttaggcaacaacacagaa---aaattcccacatagtgttctattggctaaaattaaaaaAAAaaaa--aaaaaatccctgacaatagtaaatgctag--aaaaaatgcagagcaaaggggactcttatttattactgatggaaatgcaaaatgttacaatcactttgaagaaccacttggcagttttttataaagcttttaataaactcaccatatgatccaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2186567 214 +   2316924 ------------------------------------------------------------------ttaggcaacaagacagaa---aaattcccacgtagtgttctattggctaaaattaaaaaAAAaaaa--acaa---ccctgacaatagtaaatgttag--aaaaaatgcagagcaaaggggactcttatttattactgatggaaatgcaaaatgttacaatcactttgaagaaccacttggcagtttcttataaagcttataataaactcaccatatgatccaac
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171603284 197 - 171630274 ------------------------------------------------------------------tcctataacaagattgaaaataaattctcacaaaTCCCTTTGTT-GCTA---------TAAcaaac--aaa------ctgaaaatagtaaatgctag--caaaaatgcaaaatgagggaaactct--ttgattgctggtagaaatgtaaattggtgcaatcactttg----accatttggcagttt-ttatcaagtttaatatagtcttgccatatgagttaac
i calJac3.chr4             C 0 T 37208
e dasNov3.JH570037            315338 19697 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725245 32185 -   2232465 I
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I

a score=1791694.000000
s hg38.chr6_GL000254v2_alt    334191 384 +   4827813 C-ccatcattcttcatagaactag-aaaaaacaatcctaaaattcatgtggaaccaaaaaagagcccacatagccaaagcaagactaagcaaaaagaacaaatctggaggcatcacattacctgatttgaaactatactataaggccatagtcaccaaaacagcatggtatgggtataaaagtaggcacatagacccatggaacagaatagagaaccaagaaataaaaccaaatacttataaccaactgatctttgacaaagcaaacagaaacataaagtggggagaggacacgctattcaacagatgttgctgggataattggcaagccatatgtaggataatgaaccaggatcctcatctctcaccttatacaaaaatcaactc
s panTro5.chr6              29308911 384 + 175400573 C-ccatcattcttcatagaactag-aaaaaacaatcctaaaattcatgtggaaccaaaaaagagcccacatagccaaagcaagactaagcaaaaagaacaaatctggaggcatcacattacctgatttgaaactatactgtaaggccatagtcaccaaaacagcatggtatgggtataaaagtaggcacacagacccatggaacagaatagagaaccaagaaataaaaccaaatacttataaccaactgatctttgacaaagcaaacagaaacataaagtggggagaggacacgctattcaacagatggtgctgggataattggcaagccatatgtaggataatgaactgggatcctcatctctcaccttatacaaaaatcaactc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29554892 384 + 173848474 C-ccatcattcttcatagaactag-aaaaaacaatcctaaaattcgtgtggaaccaaaaaagagcccacaaagccaaagcaagactaagcaaaaagaacaaatctggaggcatcacattacctgatttgaaactatactgtaaggccatagtcaccaaaacagcatggtatgggtataaaagtaggcacacagacccatggaacagaatagagaaccaagaaataaaaccaaatgcttataaccaactgatctttgacaaagcaaacagaaacataaagtggggagaggacacgctattcaacagatggtgctgggataattggcaagccatatgtaggataatgaactgggatcctcatctctcaccttatacaaaaatcaactc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5352167 384 +   6154872 C-ccatcattcttcatagaactag-aaaaaacaatcctaaaattcatgtggaacccaaaaagagcccacatagccaaagcaagactaatcaaaaagaacaaatctggaggcatcacattacctgatttgaaactatactataaggccatagtcaccaaaacagcatggtatgggtataaaagtaggcacatagacccatggaacagaatagagaaccaagaaataaaaccaaatacttatagccaactgatctttgacaaagcaaacagaaacataaagtggggagaggacacactattcaacagatgttgctgggataattggcaagccatatgtaggataatgaaccgggatcctcatctgtcaccttatacaaaaatcaactc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74365655 385 + 122973662 caccatcattcttcttagaactag-aaaaaacaatcctaaaattaatgtggaaccaaaaaacagcccacatagctaaagcaagactaagcaaaaagaacaaatctggaggcatcacattacctgatttgaaactatactataaggccatagtcaccaaaacagcatggtatgggtataaaagtaggcacaaagaccaatggaacagaatagagaaccaagaaataaaaccaaatacttatagccaactgatctttgacaaagcaaacagaaacataaagtgggtagaggacacgctattcagcagatgttgctgggataattggcaagccatatgtaggataacgaacagggatcctcatctctcaccttatacaaaaatcaactc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29514999 386 + 172585720 caccatcattcttcaaagaactagaaaaaaaaaatcctaaaattcatatggaaccaaaaaagagcccacatagccaaagcaagactaagcaaaaagaacaaatctagaggcatcacattacctgatttcaaactatactataaggccatagtcaccaaaacagcatggtacgggtataaaaataggcacatagaccaatgtaacataatacagaaccaagaaataaacccaaatatttacagccaactgatctttgacaaagcaaacagaaacataaagtggggagaggacacactgttcaaccgatggtgctgggataattggcaagccacatgtaggataacgaacctggatcctcatctctcactttatacaaaagtcaccac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29176113 385 - 170955103 caccatcattcttcaaagaactag-aaagaaaaatcctaaaattcatatggaaccaaaaaagagcccacatagccaaagcaagactaagcaaaaagaacaaatctagaggcatcacattacctgatttcaaactatactataaggccatagtcaccaaaacagcatggtacgggtataaaaataggcacatagaccaatgtaacataatacagaaccaagaaataaacccaaatatttacagccaactgatctttgacaaagcaaacagaaacataaagtggggagaggacacactgttcaaccgatggtgctgggataattggcaagccacatgtaggataacgaacctggatcctcatctctcactttatacaaaagtcaccac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2168645 385 -   2996164 caccatcattcttcaaagaactag-aaaaaaaaatcctaaaattcatatggaaccaaaaaagaacccacatagccaaagcaagactaagcaaaaagaacaaatctagaggcatcacattacctgatttcaaactatactataaggccatagtcaccaaaacagcatggtacgggtataaaaataggcacatagaccaatgtaacataatacgggaccaagaaataaacccaaatatttacagccaactgatctttgacaaagcaaacagaaacataaagtggggagaggacacactgttcaaccgatggtgctgggataattggcaagccacatgtaggataacgaacctggatcctcatctcttactttatacaaaagtcaccac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2049089 385 -   2157725 caccatcattcttcaaagaactag-aaaaaaaaatcctaaaattcatatggaaccaaaaaagagcccacatagccaaagcaagactaagcaaaaagaacaaatctagaggcatcactttacctgatttcaaactatactataaggccatagtcaccaaagcagcatggcaagggtataaaaatacacacatagaccaatgtaacataatacagaaccaagaaataaacccaaatacttacagccaactgatctttgacaaagcaaacagaaacataaagtggggagaggacacactgttcaaccgatggtgctgggataattggcaagccacatgtaggataacgaacctggatcctcatctctcactttatacaaaagtcaccac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28479637 385 -  71996105 caccatcattcttcaaagaactag-aaaaaaagatcctaaaattcatatggaaccaaaaaagagcccacatagccaaagcaagactaagcaaaaagaacaattcttgaggcatcacattacctgatttcaaactatactataaggccatagtcaccaaaacagcatggtatgggtataaaaataggcacatagaccaatgtaacataatacagaaccaagaaataaacccaaatacttacagccaactgatctttgacaaagcaaacagaaacataaagtggggagaggacacactgttcaaccgatggtgctgggataattggcaagccacatgtaggataatgaacctggatcctcatctctcactttatacaaaagtcaccac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2186781 385 +   2316924 caccatcattcttcaaagaactag-aaaaaaaaatcctaaaattcatatggaaccaaaaaagagcccacatagccaaagcaagactaagcaaaaagaacaaatctagaggcatcactttacctgatttcaaactatactataaggccatagtcaccaaagcagcatggtaagggtataaaaatacgcacatagaccaatgtaacataatacagaaccaagaaataaacccaaatacttacagccaactgatctttgacaaagcaaacagaaacataaagtggggagaggacacactgttcaaccgatggtgctgggataattggcaagccacatgtaggataacgaacctggatcctcatctctcactttatacaaaagtcaccac
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            315338 19697 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725245 32185 -   2232465 I
e calJac3.chr4             171603481 37208 - 171630274 T
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I

a score=745.000000
s hg38.chr6_GL000254v2_alt    334575 1 +   4827813 a
s panTro5.chr6              29309295 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29555276 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5352551 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74366040 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29515385 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29176498 1 - 170955103 g
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2169030 1 -   2996164 g
i macNem1.NW_012011356v1   C 0 C 0
e dasNov3.JH570037            315338 19697 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725245 32185 -   2232465 I
e calJac3.chr4             171603481 37208 - 171630274 T
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I
e manLeu1.NW_012104165v1     2187166 0 +   2316924 C
e chlSab2.chr17             28480022 0 -  71996105 C
e cerAty1.NW_012001495v1     2049474 0 -   2157725 C

a score=18420.000000
s hg38.chr6_GL000254v2_alt    334576 13 +   4827813 agatggatcaaag
s panTro5.chr6              29309296 13 + 175400573 agatggatcaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29555277 13 + 173848474 agatggatcaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5352552 13 +   6154872 agatggatcaaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74366041 13 + 122973662 agatggatcaaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29515386 13 + 172585720 agatggatcaaag
i rheMac8.chr4             C 0 I 8
e dasNov3.JH570037            315338 19697 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725245 32185 -   2232465 I
e calJac3.chr4             171603481 37208 - 171630274 T
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I
e manLeu1.NW_012104165v1     2187166  0 +   2316924 C
e chlSab2.chr17             28480022  0 -  71996105 C
e cerAty1.NW_012001495v1     2049474  0 -   2157725 C
e macNem1.NW_012011356v1     2169031  0 -   2996164 C
e macFas5.chr4              29176499  0 - 170955103 C

a score=252472.000000
s hg38.chr6_GL000254v2_alt    334589 294 +   4827813 ctgagtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcacgaggtcaggagatcaagaccattctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcatggcagcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggcagcagagcttgcagtgagctggtattgagccactgcactctagcctgggggacagagcaagactctgtctaaaaaaaaaaaaaaaa
s panTro5.chr6              29309309 294 + 175400573 ctgagtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagatcaagaccattctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcatggcagcgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggcggcagagcttgcagtgagctgatattgagccactgcactctagcctgggggacagagcaagactctgtctaaaaaaaaaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29555290 294 + 173848474 ctgagtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagatcaagaccattctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcatggcagcgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggcggcagagcttgcagtaagctgatattgagccactgcactctagcctgggggacagagcaagactctgtctaaaaaaaaaaaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5352565 288 +   6154872 ctgagtgcagtggctcacacctataatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagatcaagaccattctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcatggcaacaggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggcggcagagcttgcagtgagctgagattgagccactgcactctagcctgggggacagagcaagactctgtctaaaaaaaaaa------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74366054 283 + 122973662 ctggatgcggtgtctcaagcctgtaatcccagcactttgggaggccgaggagggtggatcacgaggtcaggagatcgagaccattctggctaacacggtgaaaccccatctctactaaaaatacaaaaaattagctgggcatggcagcaggcgcctgtagtctc-----ctcgggaggctgaggcaggagaatggcgtgagcccaggcagcagagcttgcagtgagctgagattaagccactgcactctagccgaggggacagagcaacactct------aaaaaaaaaaaaaa
i nomLeu3.chr1a            C 0 C 0
e dasNov3.JH570037            315338 19697 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725245 32185 -   2232465 I
e calJac3.chr4             171603481 37208 - 171630274 T
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I
e manLeu1.NW_012104165v1     2187166   0 +   2316924 C
e chlSab2.chr17             28480022   0 -  71996105 C
e cerAty1.NW_012001495v1     2049474   0 -   2157725 C
e macNem1.NW_012011356v1     2169031   0 -   2996164 C
e macFas5.chr4              29176499   0 - 170955103 C
e rheMac8.chr4              29515399   8 + 172585720 I

a score=1911.000000
s hg38.chr6_GL000254v2_alt    334883 1 +   4827813 a
s panTro5.chr6              29309603 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29555584 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74366337 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012001495v1     2049474 1 -   2157725 a
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28480022 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2187166 1 +   2316924 a
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            315338 19697 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725245 32185 -   2232465 I
e calJac3.chr4             171603481 37208 - 171630274 T
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I
e macNem1.NW_012011356v1     2169031 0 -   2996164 C
e macFas5.chr4              29176499 0 - 170955103 C
e rheMac8.chr4              29515399 8 + 172585720 I
e gorGor5.CYUI01015250v1     5352853 0 +   6154872 C

a score=53935.000000
s hg38.chr6_GL000254v2_alt    334884 28 +   4827813 a---gatggatcaaagacttaaat-------ctaagac
s panTro5.chr6              29309604 31 + 175400573 aaaagatggatcaaagacttaaat-------ctaagac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29555585 29 + 173848474 a--agatggatcaaagacttaaat-------ctaagac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5352853 27 +   6154872 ----gatggatcaaagacttaaat-------ctaagac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74366338 17 + 122973662 a-------gatcaaagacttaaat--------------
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29176499 21 - 170955103 ---agatggatcaaagacttaagt--------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2169031 21 -   2996164 ---agatggatcaaagacttaaat--------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2049475 28 -   2157725 ---agatggatcaaagacttaaatctaagac-------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28480023 21 -  71996105 ---agatggatcaaagacttaaat--------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2187167 21 +   2316924 ---agatggatcaaagacttaaat--------------
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            315338 19697 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725245 32185 -   2232465 I
e calJac3.chr4             171603481 37208 - 171630274 T
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I
e rheMac8.chr4              29515399  8 + 172585720 I

a score=1171970.000000
s hg38.chr6_GL000254v2_alt    334912 261 +   4827813 ctaagacctgaaactataaaaattctagaagataacattgaaaaaaaccttctagacattggctcaggcaaagatttctgaccaagaacccaaaagcaaatgcaacaaaatccaagataaataggtggggtttaatgaaactaaagag-ctttggcacagcaaaa-gaacagtcagcagagtagattactcacaaagtgggagaaaatttttcacaatctatacaatctgtacatctgacaaaggactaataatccagtattt
s panTro5.chr6              29309635 261 + 175400573 ctaagacctgaaactataaaaattctagaagataacattgaaaaaaaccttctagacattggctcaggcaaagatttctgaccaagaacccaaaagcaaatgcaacaaaatccaagataaataggtggggtttaatgaaactaaagag-ctttggcacagcaaaa-gaacagtcagcagagtagattactcacaaagtgggagaaaatttttcacaatctatacaatctgtacatctgacaaaggactaataatccagtattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29555614 261 + 173848474 ctaagacctgaaactataaaaattctagaagataacattgaaaaaaaccttctagacattggctcaggcaaagatttctgaccaagaacccaaaagcaaatgcaacaaaatccaagataaataggtggggtttaatgaaactaaagag-ctttggcacagcaaaa-gaacagtcagcagagtagattactcacaaagtgggagaaaatttttcacaatctatacaatctgtacatctgacaaaggactaataatccagtattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5352880 261 +   6154872 ctaagacctgaaactataaaaattctagaagataacattgaaaaaaaccttctagacattggctcaggcaaagatttctgaccaagaacccaaaagcaaatgcaacaaaatccaagataaataggtggggtttaatgaaactaaagag-cttttgcacagcaaaa-gaacagtcagcagagtagattactcacaaagtgggagaaaatttttcacaatctgtacaatctgtacatctgacaaaggactaataatccagtattt
i gorGor5.CYUI01015250v1   C 0 I 106
s nomLeu3.chr1a             74366355 254 + 122973662 ctaagacctgaaactataaaaatcatagaacataacattgaaaaaaaccttctagacattggcttaggcaaatatttctgaccaagaacccaaaagcaaatgcaacaaaatccaagataaataggtggggtttaatgaaactaaagaaccctttgcacagcaaaaggaacagtcagtggagtagattactcacaaagtgggagaaaatttttcacaaccta---------tacatctgacaaaggactaataatccagtattt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29515407 253 + 172585720 ctaagacttgaaactgtaaaaattctagaagataacatcggtaaaaaccttctagacattggcttaggcaaagatttctgaccaagaacccaaaagcaaatgcaacaaaatccaagataaataggtggggtttaatgaaactaaagag-cctttgcacagcaaaaggaacagtcagcatagtagataacccacagactgggagaacatttttcacaatcta---------tacatctgacaaaggactaataatccagtatct
i rheMac8.chr4             I 8 C 0
s macFas5.chr4              29176520 253 - 170955103 ctaagacttgaaactgtaaaaattctagaagataacatcggtaaaaaccttctagacattggcttaggcaaagatttctgaccaagaacccaaaagcaaatccaacaaaatccaagataaataggtggggtttaatgaaactaaagag-cctttgcacagcaaaaggaacagtcagcatagtagataacccacagactgggagaacatttttcacaatcta---------tacatctgacaaaggactaataatccagtatct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2169052 253 -   2996164 ctaagacttgaaactgtaaaaattctagaagataacatcggtaaaaaccttctagacattggcttaggcaaagatttctgaccaagaacccaaaagcaaatgcaacaaaatccaagataaataggtggggtttaatgaaactaaagag-cctttgcacagcaaaaggaacagtcagcatagtagataacccacagactgggagaacatttttcacaatcta---------tacatctgacaaaggactaataatccagtatct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2049503 246 -   2157725 -------ttgaaactgtaaaaattctagaagataacatcggtaaaaaccttctatacattggcttaggcaaagatttctgaccaagaacccaaaagcaaatgcaacaaaatccaagataaataggtggggtttaatgaaactaaagag-cctttgcacagcaaaaggaatagtcagcatagtagataacccacagactgggagaacatttttcacaatcta---------tacatctgacaaaggactaataatccagtattt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28480044 253 -  71996105 ctaagacttgaaactgtaaaaattctagaagataacatcggtaaaaaccttctagacattggcttaggcaaagatttctgaccaagaacccaaaagcaaatgcaacaaaatccaagataaataggtggggtttaatgaaactaaagag-cctttgcacagcaaaaggaacagtcagcatagtagataacccacagattgggagaacatttttcacaatcta---------tacatctgacgaaggactaataatccagtattt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2187188 253 +   2316924 ctaagacttgaaactgtaaaaattctagaagataacatcggtaaaaaccttctatacattggcttaggcaaagatttctgaccaagaacccaaaagcaaatgcaacaaaatccaagataaataggtggggtttaatgaaactaaagag-cctttgcacagctaaaggaatagtcagcatagtagataacccacagactgggagaacatttttcacaatcta---------tacatctgacaaaggactaataatccagtattt
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            315338 19697 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725245 32185 -   2232465 I
e calJac3.chr4             171603481 37208 - 171630274 T
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I

a score=2425982.000000
s hg38.chr6_GL000254v2_alt    335173 530 +   4827813 acaaggaactcagacaaattagcaag-----aaaaaa--tcaaacaatcccatcaataagtgggctaaggacatgaatagacaattctcaaaagaagatatacaaatggccagcaaacatatgaataaatgctcaacatcactaatgatcagagaaatgcaaatcaaaactgcca-tgagataccaaccttactcctgcaagaatgaccattataaaaaatttttaaaaaatatatattggcatggatgtggtgaaagggaacacttctacactgccgatgggaatgtaaactagtacaaccactatggaaaacagtgttgagattccttaaagaactaaaagtggaactaccatttgatccagcaatccccttactgggtatctactcagaggaaaagaagtcattatacgaaaaatatacttgcacatgcatgtttatagcagcacaatttgcaattgcaaaaatgtggaaccagtccaaatgcccatcaatcaacgaatagataaagaaactgtggtgtatatatatatatatat
s panTro5.chr6              29309896 530 + 175400573 acaaggaactcagacaaattagcaag-----aaaaaa--tcaaacaatcccatcaataggtgggctaaggacatgaatagacaattctcaaaagaagatatacaaatggccagcaaacatatgaataaatgctcaacatcactaatgatcagagaaatgcaaatcaaaactgcca-tgagataccaaccttactcctgcaagaatgaccattataaaaaatttttaaaaaatatatattggcatggatgtggtgaaagggaacacttctacactgccgatgggaatgtaaactagtacaaccactatggaaaacagtgttgagattccttaaagaactaaaagtggaactaccatttgatccagcaatccccttactgggtatctactcagaggaaaagaagtcgttatacgaaaaatatacttgcacatgcatgtttatagcagtgcaatttgcaattgcaaaaatgtggaaccagtccaaatgcccatcaatcaacgaatagataaagaaactgtgatatatatatgtgtgtatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29555875 530 + 173848474 acaaggaactcagacaaattagcaag-----aaaaaa--tcaaacaatcccatcaataggtgggctaaggacatgaatagacaattctcaaaagaagatatacaaatggccagcaaacatatgaataaatgctcaacatcactaatgatcagagaaatgcaaatcaaaactgcca-tgagataccaaccttactcctgcaagaatgaccattataaaaaatttttaaaaaatatatattggcatggatgtggtgaaagggaacacttctacactgccgatgggaatgtaaactagtacaaccactatggaaaacagtgttgagattccttaaagaactaaaagtggaactaccatttgatccagcaatccccttactgggtatctactcagaggaaaagaagtcattatacgaaaaatatacttgcacatgcatgtttatagcagcgcaatttgcaattgcaaaaatgtggaaccagtccaaatgcccatcaatcaacgaatagataaagaaactgtgatatatatatgtgtgtatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5353247 530 +   6154872 acaaggaactcagacaaattagcaag-----aaaaaa--tcaaacaatcccatcaataagtgggctaaggacatgaatagacaattctcaaaagaagatatacaaatggccagcaaacatatgaataaacgctcaacatcactaatgatcagagaaatgcaaatcaaaactgcca-tgagataccaaccttactcctgcaagaatgaccattataaaaaatttttaacaaatatatattggcatggatgtggtgaaagggaacacttctacactgccgatgggaatgtaaactagtacaaccactatggaaaacagtgttgagattccttaaagaactaaaagtggaactaccatttgatccagcaatccccttactgggtatctactcagaggaaaagaagtcattatacgaaaaacatacttgcacatgcatgtttatagcagcgcaatttgcaattgcgaaaatgtggaaccagtccaaatgcccatcaatcaacgaatagataaagaaactgtggtatatatatatatatatac
i gorGor5.CYUI01015250v1   I 106 C 0
s nomLeu3.chr1a             74366609 529 + 122973662 acaaggaactcagacaaattagcaag-----aaaaaaatcaaaacaatcccatcaataagtgggctaaggacatgaatagacaattctcaaaagaagatatacaaatggccagcaaacatatgaataaatgctcaacatcactaatgatcagagaaatgcaaatcaaaactgccgttgagataccaaccttactcctgcaagaatgaccgctataaaaaaatttttaaaaatagatattggcatagatgtggtgaaagggaacacttctacactgcttttgggaacgtaaactagtacaaccactatggaaaacagtgtggagattccttaaagaactaaaagtggaactaccatttgatccagcagtccccttactgggtatctactcagaggaaaagaagtcattatacaaaaaatatacttgcacatgcatgtttatagcagtgcaatttgcaattgcaaaaatgtggaaccaacccaaatgcccatcagtcaacgaatagct----aaaCtgtggtgtgtgtgtgtgtgtgtgt
i nomLeu3.chr1a            C 0 I 110
s rheMac8.chr4              29515660 524 + 172585720 acaaggaactcagacaaattagcaagaaaaaaaaaaa--tcaaacaatcccatcaattagtggactgaggacatgaacagacaattctcaaaagaagatatacagatggccagcaaacatgtgaataaatgctcaacatcacaaatgatcagagaaatgcaaatcaaaactgcca-tgagataccaaccttactcctgcaagaatgaccgttataaaaaaattaaaaaaaataaatgttggcatggatgtggtgaaagggaacacttttacactgctggtgggaatgtaaactagtacaaccattatggaaaacagtgtggagattccttaaataactaaaagtggaactaccatttgatccagcaatcacctgactaggtatctactcagaggaaaagaagtcattatac-aaaaatatacttgcacatgaatgtttatagcagtgcaatttgcaattgcaaaaatgtggaaccagcccaaatgcccatcaatcaatgagtagataaagaaaccgtggtatatatgt----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29176773 523 - 170955103 acaaggaactcagacaaattagcaag-aaaaaaaaaa--tcaaacaatcccatcaattagtggactgaggacatgaacagacaattctcaaaagaagatatacagatggccagcaaacatgtgaataaatgctcaacatcacaaatgatcagagaaatgcaaatcaaaactgcca-tgagataccaaccttactcctgcaagaatgaccgttataaaaaaattaaaaaaaataaatgttggcatggatgtggtgaaagggaacacttttacactgctggtgggaatgtaaactagtacaaccattatggaaaacagtgtggagattccttaaataactaaaagtggaactaccatttgatccagcaatcacctgactaggtatctactcagaggaaaagaagtcattatac-aaaaatatacttgcacatgaatgtttatagcagtgcaatttgcaattgcaaaaatgtggaaccagcccaaatgcccatcaatcaatgagtagataaagaaaccgtggtatatatgt----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2169305 523 -   2996164 acaaggaactcagacaaattagcaag-aaaaaaaaaa--tcaaacaatcccatcaattagtggactgaggacatgaacagacaattctcaaaagaagatatacagatggccagcaaacatgtgaataaatgctcaacatcacaaatgatcagaggaatgcaaatcaaaactgcca-tgagataccaaccttactcctgcaagaatgaccgttataaaaaaattaaaaaaaataaatgttggcatggatgtggtgaaagggaacacttttacactgctggtgggaatgtaaactagtacaaccattatggaaaacagtgtggagattccttaaataactaaaagtggaactaccatttgatccagcaatcacctgactaggtatctactcagaggaaaagaagtcattatac-aaaaatatacttgcacatgaatgtttatagcagtgcaatttgcaattgcaaaaatgtggaaccagcccaaatgcccatcaatcaatgagtagataaagaaactgtggtatatatgt----------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2049749 521 -   2157725 acaaggaactcagacaaattagcaag--aaaaaaaaa--tcaaacaatcccatcaattagtggactcaggacatgaacagacaattctcaaaagaagatatacaaatggccagcaaacatgtgaataaatgctcaacatcacaaatgatcagagaaatgcaaatcaaaactgcca-tgagataccaaccttactcctgcaagaatgactattataaaaaaattaaaaaaaataaatgttggcatggatgtggtgaaagggaacac-tttacactgctggtgggaatgtaaactagtacaaccattatggaaaacagtgtggagattccttaaataactaaaagtggaactaccatttgatccagcaatcacctcactaggtatctactcagaggaaaataagtcattatac-aaaaatatacttgcacatgaatgtttatagcagtgcaatttgcaattgcaaaaatgtggaaccagcccaaatgcccatcaatcaatgagtagataaagaaaccgtggtatatatgt----------
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28480297 522 -  71996105 acaagaaactcagacaaattagcaag--aaaaaaaaa--tcaaacaatcccatcaattagtggactgaggacatgaacagacaattctcaaaagaagatgtacaaatgaccagcaaacatgtgaataaatgctcaacatcacaaatgatcagagaaatgcaaatcaaaactgcca-tgagataccaaccttactcctgcaagaatgaccgttataaaaaaattaaaaaaaataaatgttggcatggatgtggtgaaagggaacacttttagaatgctggtgggaatgtaaactagtacaaccattatggaaaacagtgtggagattccttaaataactaaaagtggaactaccatttgatccagcaatcacctcactaggtatctactcagaggaaaagaagtcattatac-aaaaatatacttgcacatgaatgtttatagcagtgcaatttgcaattgcaaaaatgtggaaccagcccaaatgcccatcaatcaatgagtagataaagaaaccgtggtatatatgt----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2187441 521 +   2316924 acaaggaactcagacaaattagcaag--aaaaaaaaa--tcaaacaatcccatcaattagtggactcaggacatgaacagacaattctcaaaagaagatatacaaatggccagcaaacatgtgaataaatgctcaacatcacaaatgatcagagaaatgcaaatcaaaactgcca-tgagataccaaccttactcctgcaagaatgaccattataaaaaaatttaaaaaaataaatgttggcatggatgtggtgaaagggaacac-tttacactgctggtgggaatgtaaactagtacaaccattatggaaaacagtgtggagattccttaaataactaaaagtggaactaccatttgatccagcaatcacctcactaggtatctactcagaggaaaagaagtcattatac-gaaaatatacttgcacatgaatgtttatagcagtgcagtttgcaattgcaaaaatgtggaaccagcccaaatgcccatcaatcaatgagtagataaagaaaccgtggtatatatgt----------
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            315338 19697 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725245 32185 -   2232465 I
e calJac3.chr4             171603481 37208 - 171630274 T
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I

a score=1429.000000
s hg38.chr6_GL000254v2_alt    335703 15 +   4827813 atatatatatataca
s panTro5.chr6              29310426 15 + 175400573 atatatatatacaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29556405 15 + 173848474 atatatatatatata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5353777  1 +   6154872 a--------------
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570037            315338 19697 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725245 32185 -   2232465 I
e calJac3.chr4             171603481 37208 - 171630274 T
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I
e manLeu1.NW_012104165v1     2187962  0 +   2316924 C
e chlSab2.chr17             28480819  0 -  71996105 C
e cerAty1.NW_012001495v1     2050270  0 -   2157725 C
e macNem1.NW_012011356v1     2169828  0 -   2996164 C
e macFas5.chr4              29177296  0 - 170955103 C
e rheMac8.chr4              29516184  0 + 172585720 C
e nomLeu3.chr1a             74367138 110 + 122973662 I

a score=1710450.000000
s hg38.chr6_GL000254v2_alt    335718 356 +   4827813 cacaca------------------------atgg-aatactactcagccataaaaaggaatgaattaatggcattcacaacaacctagatgggattggagactattattctaaatgaagtaactcaggaatggaaaaccaaatattgtatgttcttgctcataagagggagcgaagcaatgaggatgcaaaggcataagaatgatacaatggactttggggactgggtgggggaaagggtaggaggggagggagggataaaagactacaaattgagttcagtgtatactgctcaggtggtgggtgcaccaaaatctcacaaatcaccactaaagaacttatgtaaccaaataccacctgttacctaaaaacctatggagat
s panTro5.chr6              29310441 370 + 175400573 cacaca----------cacacacacacacaatgg-aatactgctcagccataaaaaggaatgaattaatggcattcacaacaacctagatgggattggagactattattctaaatgaagtaactcaggaatggaaaaccaaatattgtatgttcttgctcataagagggagcgaagcaatgaggatgcaaaggcataagaaggatacaatggactttggggactgggtgggggaaagggtaggaggggagggagggataaaagactacaaattgagttcagtgtatactgctcaggtggtgggtgcaccgaaatctcacaaatcaccactaaagaacttatgtaaccaaataccacctgttacctaaaaacctatggagat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29556420 380 + 173848474 cacacacacacacacacacacacacacacaatgg-aatactgctcagccataaaaaggaatgaattaatggcattcacaacaacctagatgggattggagactattattctaaatgaagtaactcaggaatggaaaaccaaatattgtatgttcttgctcataagagggagcgaagcaatgaggatgcaaaggcataagaaggatacaatggactttggggactgggtgggggaaagggtaggaggggagggagggataaaagactacaaattgagttcagtgtatactgctcaggtggtgggtgcaccaaaatctcacaaatcaccactaaagaacttatgtaaccaaataccacctgttacctaaaaacctatggagat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5353778 350 +   6154872 ------------------------------atgg-aatactactcagccataaaaaggaatgaattaatggcattcacaacaacctagatgggattggagactattattctaaatgaagtaactcaggaatggaaaaccaaatattgtatgttcttgctcataagagggagctaagcaatgaggatgcaaaggcataagaatgatacaatggactttggggactgggtgggggaaagggtaggaggggagggagggataaaagactacaaattgagttcagtgtatactgctcaggtggtgggtgcaccaaaatctcacaaatcaccactgaagaacttatgtaaccaaataccacctgttacctaaaaacctatggagat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74367248 354 + 122973662 Cacaca------------------------atggaaatactactcagccatgaaaaggaatgaattaatagcattcacaacaacctagatgggattggagactattattctaaatgaagtaactcagaaatggaaaaccaaatattgtatgttcttgctcataagagggagctaagcaatgaggatgcaaaggcataagaatgatacaatggactttggggactgggtgggggaaagggtaggaagggagggagggataaaagactacaaattgggttcagtgtatactgctcaggtgatgggtgcaccaaaatctcacaaatcaccacta---aacttatgtaaccaaataccacctgttacctaaaaacctatggagat
i nomLeu3.chr1a            I 110 C 0
s rheMac8.chr4              29516184 353 + 172585720 ---aca------------------------atgg-aatactactcagccataaaaaggaatgaattaatggcattcacaacaaactggatgggattggagactattattctaaatgaagtaactcaggaatggaaaaccaaatattgtatgttcttgctcataagagggagctaagcaatgaggatgcaaaggcataagaatgatacaatggactttggggactgggtgggggaaagggtaagaaggaaatgagggatgaaagactacaaattgggttcagtgtatactgcttaggttgtgggtgcaccaaaatctcacaaatcagcactaaagaacttatataaccaaataccacctgttacctaaaaacctatggagat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29177296 353 - 170955103 ---aca------------------------atgg-aatactactcagccataaaaaggaatgaattaatggcattcacaacaaactggatgggattggagactattattctaaatgaagtaactcaggaatggaaaaccaaatattgtatgttcttgctcataagagggagctaagcaatgaggatgcaaaggcataagaatgatacaatggactttggggactgggtgggggaaagggtaagaaggaaatgagggatgaaagactacaaattgggttcagtgtatactgcttaggttgtgggtgcaccaaaatctcacaaatcagcactaaagaacttatataaccaaataccacctgttacctaaaaacctatggagat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2169828 353 -   2996164 ---aca------------------------atgg-aatactactcagccataaaaaggaatgaattaatggcattcacaacaaactggatgggattggagactattattctaaatgaagtaactcaggaatggaaaaccaaatattgtatgttcttgcttataagagggagctaagcaatgaggatgcaaaggcataagaatgatacaatggactttggggactgggtgggggaaagggtaagaaggaaatgagggatgaaagactacaaattgggttcagtgtatactgcttaggttgtgggtgcaccaaaatctcacaaatcagcactaaagaacttatataaccaaataccacctgttacctaaaaacctatggagat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2050270 353 -   2157725 ---aca------------------------atgg-aatactactcagccataaaaaggaatgaattaatggcattcacaacaaactggatgggattggagactattattctaaatgaagtaactcaggaatggaaaaccaaatattgtatgttcttgctcataagagggagctaagcaatgaggatgcaaaggcataagaatgatacaatggactttggggactgggtgggggaaagggtaagaaggaaatgagggatgaaagactacaaattgggttcagtgtatgctgcttaggtggtgggtgcaccaaaatctcacaaatcaccactaaagaacttatgtaaccaaataccaccagttacctaagaacctatggagat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28480819 353 -  71996105 ---aca------------------------atgg-aatactactcagccataaaaaggaatgaattaatggcattcacaacaaactggatggggttggagactattattctaaatgaagtaactcaggaatggaaaaccaaatattgtatgttcttgctcataagagggagctaagcaatgaggatgcaaaggcataagaatgatacaatagactttggggactgggttggggaaagggtgagaaggaaatgagggatgaaagactacaaattgggttcagtgtatactgcttaggtggtgggtgcaccaaaatctcacaaatcaccactaaagaacttatgtaaccaaataccacctgttacctaaaaacctatggagat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2187962 353 +   2316924 ---aca------------------------atgg-aatactactcagccataaaaaggaatgaattaatggcattcacaacaaactggatgggattggagactattattctaaatgaagtaactcaggaatggaaaaccaaatattgtatgttcttgctcataagagggagctaagcaatgaggatgcaaaggcataagaatgatacaatggactttggggactgggtgggggaaagggtaagaaggaaatgagggatgaaagactacaaattgggttcagtgtatactgcttaggtggtgggtgcaccaaaatctcacaaatcaccactaaagaacttatgtaaccaaatgccaccagttacctaagaacctatggagat
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            315338 19697 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1725245 32185 -   2232465 I
e calJac3.chr4             171603481 37208 - 171630274 T
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I

a score=1563950.000000
s hg38.chr6_GL000254v2_alt    336074 321 +   4827813 aaaaaaTTTAAAAAAACATTCAGCTA------CAAACCTCTTTTGCTACACTCATTGTTTAGTATATGACACATTTTTGCATGATTCTGTTATATAGGTTTTAATAGTAGGTAATTAGGACAGTGGGTAATACTTATCATTCATTCATTTATTTAAAAAATACTTATTTAGAGCCCATT------CTCTCAAT------ACAGGTCAGTACTATGAAGGAGAGGTACACAGTGAAATCAGGCCTAGTCCTT-ACAGACATGTTGGTATGCCAGGGAGTCAACTTTCCTCCAAAAGAGTGATGTTTCC-TTGTCTCCAACAATGGCAAAACTATAATAT----------------------------------------------------------------------------------------------ATA
s panTro5.chr6              29310811 321 + 175400573 aaaaaaTTTAAAAAAACATTCAGCTA------CAAACCTCTTTTGCTACACTCATTGTTTAGTATATGACACATTTTTGCATGATTCTGTTATATAGGTTTTAATAGTAGGTAATTAGGACAGTGGGTAATACTTATCATTCATTCATTTATTTAAAAAATACTTATTTAGAGCCCATT------CTCTCAAT------ACAGGTCAGTACTATGAAGGAGAGGTACACAGTGAAATCAGGCCTAGTCCTT-ACAGACATGTTGGTATGCCAGGGAGTCAACTTTCCTCCAAAAGAGTGATGTTTCC-TTGTCTCCAACAATGGCAAAACTATAATAT----------------------------------------------------------------------------------------------ATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29556800 321 + 173848474 aaaaaaTTTAAAAAAACATTCAGCTA------CAAACCTCTTTTGCTACACTCATTGTTTAGTATATGACACATTTTTGCATGATTCTGTTATATAGGTTTTAATAGTAGGTAATTAGGACAGTGGGTAATACTTATCATTCATTCATTTATTTAAAAAATACTTATTTAGAGCCCATT------CTCTCAAT------ACAGGTCAGTACTATGAAGGAGAGGTACACAGTGAAATCAGGCCTAGTCCTT-ACAGACATGTTGGTATGCCAGGGAGTCAACTTTCCTCCAAAAGAGTGATGTTTCC-TTGTCTCCAACAATGGCAAAACTATAATAT----------------------------------------------------------------------------------------------ATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5354128 320 +   6154872 aaaaaaTTAAAAAAAACATTCAGCTA------CAAACCTCTTTTGCTACACTCATTGTTTAGTATATGACACATTTTTGCATGATTCTGTTATACAGGTTTTAATAGTAGGCAATTAGGACAGTGGGTAATACTTATCATTCATTC-TTTATTTAAAAAATACTTATTTAGAGCCCATT------CTCTCAAT------ACAGGTCAGTACTATGAAGGAGAGGTACACAGTGAAATCAGGCCTAGTCCTT-ACAGACATGTTGGTATGCCAGGGAGTCAACTTTCCTCCAAAAGAGTGATGTTTCC-TTGTCTCCAACAATGGCAAAACTATAATAT----------------------------------------------------------------------------------------------ATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74367602 414 + 122973662 aaaaaaTTTAAAAAAAAA-TCAGCTA------CAAACCTGTTTTGCTACACTCATTGTTTAGTATATGACACATTTTTGCATGATTCTGTTATATAGGTTTTAATAGTAGGTAATTAGGACAGTGGGTAATAGTTATCATTCATTCACTTATTTAAAAAATACTTATTTAGAGCCCATT------CTCTCAAT------ACAGGTCAGTACTATGAAGGAGAGGTACACAGTGAAATCAGGCCTAGTCCTT-ACAGACATGTGGGTATGCCAGGGAGTCAACTTTCCTCCAAAAGAGTGATGTTTCC-TTGTCTCCAACAAGGGCAAAACTATAATATCCTTCCCTTCAAGTCTACAAAGGAAATTTTATTGCAATGCATAGAGCATAAATTGAAGAGTGAATCAATTTATTATAATTAATTATTGATTACAATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29516537 344 + 172585720 aaaaaaTTAAAAAAAAA--TCAGCTA------CAAACCTCTTTTGCTACACTCATTGTTTAGTATATGACACATTTTTTCATGATTCTGTTATATAGGTTTTAACAGTATGTAATTATGACATTGGGTAATACTTATCATTCACTCATTTATTT-AAAAATACTTATTTAGAGCCCATT------CTCTCAAT------ACAGGTCAGTACTATGAAGGACAGGTACAGAGTGAAATCAGGCCTAGTCCTT-ACAGACATGTGGATATGCCAAGCAGTCAACTTTCCTCCAAAAGAGTGATGTTTCCTTTGTCTCCAACAAGAGCAAAACTATAATATCCTTCCCTTCAAGTCTACAAAGGAA---------------------------------------------------------------------ATT
i rheMac8.chr4             C 0 I 69
s macFas5.chr4              29177649 344 - 170955103 aaaaaaTTTTAAAAAAA--TCAGCTA------CAAACCTCTTTTGCTACACTCATTGTTTAGTATATGACACATTTTTGCATGATTCTGTTATATAGGTTTTAACAGTATGTAATTATGACATTGGGTAATACTTATCATTCACTCATTTATTT-AAAAATACTTATTTAGAGCCCATT------CTCTCAAT------ACAGGTCAGTACTATGAAGGACAGGTACAGAGTGAAATCAGGCCTAGTCCTT-ACAGACATGTGGATATGCCAAGCAGTCAACTTTCCTCCAAAAGAGTGATGTTTCCTTTGTCTCCAACAAGAGCAAAACTATAATATCCTTCCCTTCAAGTCTACAAAGGAA---------------------------------------------------------------------ATT
i macFas5.chr4             C 0 I 69
s macNem1.NW_012011356v1     2170181 344 -   2996164 aaaaaaTTTAAAAAAAA--TCAGCTA------CAAACCTCTTTTGCTACACTCATTGTTTAGTATATGACACATTTTTGCATGATTCTGTTATATAGGTTTTAACAGTATGTAATTATGACATTGGGTAATACTTATCATTCACTCATTTATTT-AAAAATACTTATTTAGAGCCCATT------CTCTCAAT------ACAGGTCAGTACTATGAAGGACAGGTACAGAGTGAAATCAGGCCTAGTCCTT-ACAGACATGTGGATATGCCAAGCAGTCAACTTTCCTCCAAAAGAGTGATGTTTCCTTTGTCTCCAACAAGAGCAAAACTATAATATCCTTCCCTTCAAGTCTACAAAGGAA---------------------------------------------------------------------ATT
i macNem1.NW_012011356v1   C 0 I 69
s cerAty1.NW_012001495v1     2050623 344 -   2157725 aaaaaaTTTAAAAAAAA--TCAGCTA------CAAACCTCTTTTGCTACACTCATTGTTTAGTATATGACACATTTTTGCATGATTCTGTTATATAGGTTTTAACAGTATGTAATTATGACATTGGGTAATACTTATCATtcactcagttattt-aaaaatacttatttagagcccatt------ctctcagt------acaggtcagtactatgaaggacaggtacagagtgaaatcaggcctagtcctt-acAGACATGTGGATATGCCAGGCAGTCAACTTTCCTCCAAAAGAGTGATGTTTCCTTTGTCTCCAACAAGAGCAAAACTATAATATCCTTCCCTTCAAGTCTACAAAGGAA---------------------------------------------------------------------ATT
i cerAty1.NW_012001495v1   C 0 I 69
s chlSab2.chr17             28481172 337 -  71996105 aaaaaaTTTTTAAAAAA--TCAGCTA------CAAACCTCTTTTGCTACACTCATTGTTTAGTATATGACACATTTTTGCATGATTCTGTTATATAGGTTTTAACAGTATGTAATTATGACGTTGGGTAATACTTATCATTCACTCATTTAT--------TACTTATTTAGAGCCCATT------CTCTCAAT------ACAGTTCAGTACTATGAAGGACGGGTATAGAGTGAAATCAGGCCTAGTCCTT-ACAGACATGTGGATATGCCAGGGAGTCAACTTTCCTCCAAAAGAGTGATGTTTCCTTTGTCTCCAACAAGAGCAAAACTATAATATCCTTCCCTTCAGGTCTACAAAGGAA---------------------------------------------------------------------ATT
i chlSab2.chr17            C 0 I 69
s manLeu1.NW_012104165v1     2188315 344 +   2316924 aaaaaaTTTTAAAAAAA--TCAGCTA------CAAACCTCTTTTGCTACACTCATTGTTTAGTATATGACACATTTTTGCATGATTCTGTTATATAGGTTTTAACAGTATGTAATTATGACATTGGGTAATACTTATCATTCACTCATTTATTT-AAAAATACTTATTTAGAGCCCATT------CTCTCAAT------ACAGGTCAGTACTATGAAGGACAGGTACAGAGTGAAATCAGGCCTAGTTCTT-ACAGACATGTGGATATGCCAGGGAGTCAACTTTCCTCCAAAAGAGTGATGTTTCCTTTGTCTCCAACAAGAGCAAAACTATAATATCCTTCCCTTCAAGTCTACAAAGGAA---------------------------------------------------------------------ATT
i manLeu1.NW_012104165v1   C 0 I 69
s otoGar3.GL873742           1757430 407 -   2232465 AAGATAGTTTGAAAAACATTTCCCTAAAGTATCTAAACTAGTTTGTTGCACTCATTATTTGGTGAATGTCATGGATTTACAGAAGCCTGTCATAATAG--------GTAGGTATTAAGGACAGTAGGCAATTCATTTTATTCattcatttacttaaaaaatatttctggagggtatattcagtggcattcattgtgctaaccactcaggttactgaagGAGGAGTACATAGTAAAATCAGACCTAGTCCTTAACAGACCCA--GCTATACTAGGAAATCAATTTGTCTCCAAAAGAGTAGTGTTTCC-TTGTCTCCAACAAGAGAAAACCCATAATAT--------TCAAGTCTATTACGGAAAGCTTATTATAATGTATAGAACATAAGTAGAAGAATGAACtaatttattttaattaatta---------ata
i otoGar3.GL873742         I 32185 C 0
e dasNov3.JH570037            315338 19697 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171603481 37208 - 171630274 T
e colAng1.NW_012115566v1     2066503 3471 -   3067355 I

a score=205345.000000
s hg38.chr6_GL000254v2_alt    336395 35 +   4827813 ----------------A---TATTTCTTTATCAGCGGTTTGCACATTGTGTGTT
s panTro5.chr6              29311132 35 + 175400573 ----------------A---TATTTCTGTATCAGCGGTTTGCACATTGTGTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29557121 35 + 173848474 ----------------A---TATTTCTGTATCAGCGGTTTGCACATTGTGTGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5354448 35 +   6154872 ----------------A---TATTTCTGTATCAGCGGTTTGCACATTGTGTGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74368016 38 + 122973662 ----------------AATGTATTTCTGTATCAGCGGTTTGCACATTGTGTGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29516950 35 + 172585720 ----------------a---tattTCTGTATCAGAGGTTTGCACATTGTGAGTT
i rheMac8.chr4             I 69 C 0
s macFas5.chr4              29178062 35 - 170955103 ----------------a---tattTCTGTATCAGAGGTTTGCACATTGTGAGTT
i macFas5.chr4             I 69 C 0
s macNem1.NW_012011356v1     2170594 35 -   2996164 ----------------a---tattTCTGTATCAGAGGTTTGCACATTGTGAGTT
i macNem1.NW_012011356v1   I 69 C 0
s cerAty1.NW_012001495v1     2051036 35 -   2157725 ----------------a---tattTCTGTATCAGAGGTTTGCACATTGTGAGTT
i cerAty1.NW_012001495v1   I 69 C 0
s chlSab2.chr17             28481578 35 -  71996105 ----------------a---tattTCTGTATCAGAGGTTTGCACATAATGAGTT
i chlSab2.chr17            I 69 C 0
s manLeu1.NW_012104165v1     2188728 35 +   2316924 ----------------a---tattTCTGTATCAAAGGTTTGCACATTGTGAGTT
i manLeu1.NW_012104165v1   I 69 C 0
s colAng1.NW_012115566v1     2069974 35 -   3067355 ----------------A---TATTTCTGTATCAGAGGTTTGCACATTGTGAGTT
i colAng1.NW_012115566v1   I 3471 C 0
s otoGar3.GL873742           1757837 51 -   2232465 attGATTGAAATCAATA---AATGTTTCTATCAGAGGTTTGTATATTATGAGTC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            315338 19697 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171603481 37208 - 171630274 T

a score=3796304.000000
s hg38.chr6_GL000254v2_alt    336430 581 +   4827813 AATAGATTTTGTTCTTGTCATTCAGAAGAGCAC----AGTGGAAATA--------CATGAAGGATGGGCAGATGTGTGAAGGCCTCAAATGAATGTATGTAGTTG-TTAGAAAAA----CAAATGTTTTTCTTAAACACAAGTTGAAAGACA----------------GGGGAGCAGAGGAAGTATAAGAAAAATTATGGATTTATAATGAGGAGAGTTGATGTTATGGATAAAGTCAACAGAACACTGCCTTCTTACAT-CATTATCCAACTTTCTACTTTGTCACCTCTATCTCAAAATTGACGGTCTGATAGCTAGTT--------TATTTTATATTTG-----CCCCAGGTTGTGCTCTACCTTCTTTTTCC----ATTTTCCTTCTGCTG-------AATATTCTGA-TTT-TAAATGATGAGACGATTTAATCCTTCGGTTACCTACCAAATACATCTAATTTTCTCATTCTAGGTAGGTTGTCTTCCCATTGAAGGGTGAGTGGCTCTCAATATTAAGAGACAACATAGA-AATTTCTGAAGATTTTAA-------CTTCTCCATCTGATAA---------CCTAGAAATAATTACTTCAGTCAAATACCTCAGAAGGAAGAAATCCCATTAAGATC---GATAGGAA-------------------------------------------------------------AGAGTC
s panTro5.chr6              29311167 581 + 175400573 AATAGATTTTGTTCTTGTCATTCAGAAGAGCAC----AGTGGAAATA--------CATGAAGGATGGGCAGATGTGTGAAGGCCTCAAATGAATGTATGTAGTTG-TTAGAAAAA----CAAATGTTTTTCTTAAACACAAGTTGAAAGACA----------------GGGGAGCAGAGGAAGTATGAGAAAAATTATGGATTTATAATGAGGAGAGTTGATGTTATGGATAAAGTCAACAGAACACTGCCTTCTTACAT-CATTATCCAACTTTCTACTTTGTCACCTCTATCTCAAAATTGACGGTCTGATAGCTAGTT--------TATTTTATATTTG-----CCCCAGGTTGTGCTCTGCCTTCTTTTTCC----ATTTTCCTTCTGCTG-------AATATTCTGA-TTT-TAAATGATGAGACGATTTAATCCTTCGGTTACCTACCAAATACATCTAATTTTCTCATTCTAGGTAGGTTGTCTTCCCATTGAAGGGTGAGTGGCTCTCAATATTAAGAGACAACATAGA-AATTTCTGAAGATTTTAA-------CTTCTCCATCTGATAA---------CCTAGAAATAATTACTTCAGTCAAATACCTCAAAAGGAAGAAATCCCATTAAGATC---GATAGGAA-------------------------------------------------------------AGAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29557156 581 + 173848474 AATAGATTTTGTTCTTGTCATTCAGAAGAGCAC----AGTGGAAATA--------CATGAAGGATGGGCAGATGTGTGAAGGCCTCAAATGAATGTATGTAGTTG-TTAGAAAAA----CAAATGTTTTTCTTAAACACAAGTTGAAAGACA----------------GGGGAGCAGAGGAAGTATAAGAAAAATTATGGATTTATAATGAGGAGAGTTGATGTTATGGATAAAGTCAACAGAACACTGCCTTCTTACAT-CATTATCCAACTTTCTACTTTGTCACCTCTATCTCAAAATTGACGGTCTGATAGCTAGTT--------TATTTTATATTTG-----CCCCAGGTTGTGCTCTGCCTTCTTTTTCC----ATTTTCCTTCTGCTG-------AATATTCTGA-TTT-TAAATGATGAGACGATTTAATCCTTCGGTTACCTACCAAATACATCTAATTTTCTCATTCTAGGTAGGTTGTCTTCCCATTGAAGGGTGAGTGGCTCTCAATATTAAGAGACAACATAGA-AATTTCTGAAGATTTTAA-------CTTCTCCATCTGATAA---------CCTAGAAATAATTACTTCAGTCAAATACCTCAAAAGGAAGAAATCCCATTAAGATC---GATAGGAA-------------------------------------------------------------AGAGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5354483 581 +   6154872 AATAGATTTTGTTCTTGTCATTCAGAAGAGCAC----AGTGGAAATA--------CATGAAGGATGGGCAGATGTGTGAAGGCCTCAAATGAATGTATGTAGTTG-TTAGAAAAA----CAAATGTTTTTCTTAAACACAAGTTGAAAGACA----------------GGGGAGCAGAGGAAGTATAAGAAAAATTATGGATTTATAATGAGGAGAGTTGATGTTATGGATAAAGTCAACAGAACACTGCCTTCTTACAT-CATTATCCAACTTTCTACTTTGTCACCTCTATCTCAAAATTGACGGTCTGATAGCTAGTT--------TATTTTATATTTG-----CCCCAGGTTGTGCTCTACCTTCTTTTTCC----ATTTTCCTTCTGCTG-------AATATTCTGA-TTT-TAAATGATGAGACGATTTAATCCTTCGGTTACCTACCAAATACATCTAATTTTCTCATTCTAGGTAGGTTGTCTTCCCATTGAAGGGTGAGTGGCTCTCAATATTAGGAGACAACATAGA-AATTTCTGAAGATTTTAA-------CTTCTCCATCTGATAA---------CCTAGAAATAATTACTTCAGTCAAATACCTCAAAAGGAAGAAATCCCATTAAGATC---AATAGGAA-------------------------------------------------------------AGAGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74368054 576 + 122973662 AACAGATTTTGTTCTTGTCATTCGGAAGAGCAC----AGTGGAAATA--------CATGAGGGATGGGCAGATGTGTGAAGGCCTC----GAATGTATGTAGTTG-TTAGAGAAA----CAAATGTTTTTCTGAAACACAAGTTGAAAGAC------------------GGGAGCAGAGGAAGTATAAGAAAAATTATGGATTTATAATGAGGAGAGTTGATGTTATGGATAAAGTCAACAGAACACAGCCTTCTTACAT-CATTATCAAACTTTCTACTTTGTCACGTCTATCTCAAAATTGACGGTCTGATAGCTAGTT--------TATTTTATATTTGT----CCCCAGGTTGTGCTCTACCTTCTTTTTCC----ATTTTCCTTCTGCTG-------AATATTCTGA-TTT-TAAATGATGAGACGATTTAGTCCTTCGGTTACCTACCAAATACATCTAATTTTCTCATTCTACATAGGTTGTCTTCCCATTGAAGGGTGAGTGGCTGTCAATATTAGGAGACAGCATAGA-AATTTCTGAAGATTTTAA-------CTTCTCCATCTGATAA---------CCTAGAAATAATTACTTCAGTCAAATACCTCAAAAGGAAGAAATCCCATTAAGATC---GATAGGAA-------------------------------------------------------------AGAGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29516985 586 + 172585720 AATAGATTTTGTTCCTGTCATTTGGAAGAGCACATGAAGTGGAAATA--------CATGAAGGATGGGCAGATGTGTGAAGGCTTCAAATGAATGTATGTAGTTG-TTAGAAAAA----CAAATGTTTCTGTTAAACACAAGTTGAAAGATG----------------GGGGAGCAGAGGAAGTATAAGAAAAATTATGGATTTATAATGAGGAGAGTTGATGTTATGGATAAAGTTGGCAGAACACTGCCTTCTTACAT-CATTAGCAAATTTTCTACTTTGTCACCTCTATCTCAAAATTGACGGTCTGATAGCTAGTT--------TATTTTATATTTGT----CCCCAGGTTGTGCTCTACCTTCTTTTTCC----ATTTTCCTTCTGCTG-------AATATTCTGA-TTT-TAAATGATGAAACGATTTAATCCTTTAATTACCTACCAAATACATCTAATTTTCTCATTCTAGGTAAGTTGTCTTCCCATTGAAGGGTGAGTGGCTCTCAATATTAGGAGACAATATAGA-AATTTCTGAAGATTTTAA-------CTTTTCCATTTGATAA---------GCTAGAAATAATTACTTCAGTCAAATACCTCAAAAGGAAGAAATCCCATTAAGATC---GGTAGGAA-------------------------------------------------------------AGAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29178097 586 - 170955103 AATAGATTTTGTTCCTGTCATTTGGAAGAGCACATGAAGTGGAAATA--------CATGAAGGATGGGCAGATGTGTGAAGGCTTCAAATGAATGTATGTAGTTG-TTAGAAAAA----CAAATGTTTCTGTTAAACACAAGTTGAAAGATG----------------GGGGAGCAGAGGAAGTATAAGAAAAATTATGGATTTATAATGAGGAGAGTTGATGTTATGGATAAAGTTGGCAGAACACTGCCTTCTTACAT-CATTAGCAAATTTTCTACTTTGTCACCTCTATCTCAAAATTGACGGTCTGATAGCTAGTT--------TATTTTATATTTGT----CCCCAGGTTGTGCTCTACCTTCTTTTTCC----ATTTTCCTTCTGCTG-------AATATTCTGA-TTT-TAAATGATGAAACGATTTAATCCTTTAATTACCTACCAAATACATCTAATTTTCTCATTCTAGGTAAGTTGTCTTCCCATTGAAGGGTGAGTGGCTCTCAATATTAGGAGACAATATAGA-AATTTCTGAAGATTTTAA-------CTTTTCCATTTGATAA---------GCTAGAAATAATTACTTCAGTCAAATACCTCAAAAGGAAGAAATCCCATTAAGATC---GGTAGGAA-------------------------------------------------------------AGAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2170629 586 -   2996164 AATAGATTTTGTTCCTGTCATTTGGAAGAGCACATGAAGTGGAAATA--------CATGAAGGATGGGCAGATGTGTGAAGGCTTCAAATGAATGTATGTAGTTG-TTAGAAAAA----CAAATGTTTCTGTTAAACACAAGTTGAAAGATG----------------GGGGAGCAGAGGAAGTATAAGAAAAATTATGGATTTATAATGAGGAGAGTTGATGTTATGGATAAAGTTGGCAGAACACTGCCTTCTTACAT-CATTAGCAAATTTTCTACTTTGTCACCTCTATCTCAAAATTGACGGTCTGATAGCTAGTT--------TATTTTATATTTGT----CCCCAGGTTGTGCTCTACCTTCTTTTTCC----ATTTTCCTTCTGCTG-------AATATTCTGA-TTT-TAAATGATGAAACGATTTAATCCTTTAATTACCTACCAAATACATCTAATTTTCTCATTCTAGGAAAGTTGTCTTCCCATTGAAGGGTGAGTGGCTCTTAATATTAGGAGACAATATAGA-AATTTCTGAAGATTTTAA-------CTTTTCCATTTGATAA---------GCTAGAAATAATTACTTCAGTCAAATACCTCAAAAGGAAGAAATCCCATTAAGATC---GGTAGGAA-------------------------------------------------------------AGAGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2051071 586 -   2157725 AATAGATTTTGTTCTTGTCATTTGGAAGAGCACATGAAGTGGAAATA--------CATGAAGGACGGACAGATGTGTGAAGGCCTCAAATGAATGTATGTAGTTG-TTGGAAAAA----CGAATGTTTCTGTTAAACACAAGTTGAAAGATG----------------GGGGAGCAGAGGAAGTATAAGAAAAATTATGGATTTATAATGAGGAGAGTTGATGTTATGGATAAAGTCGACAGAACACTGCCTTCTTACAT-GATTAGCAAACTTTCTACTTTGTCACCTCTATCTCAAAATTGACGGTCTGATAGCTAGTT--------TATTTTATATTTGT----CCCCAGGTTGTGCTCTACCTTCTTTTTCC----ATTTTCCTTCTGCTG-------AATATTCTGA-TTT-TAAATGATGAAATGATTTAATCCTTTGGTTACCTACCAAATACATCTAATTTTCTCATTCTAGGTAAGTTGTCTTCCCATTGAAGGGTGAGTGGCTCTCAATATTAGGAGACAACATAGA-AATTTCTGAAGATTTTAA-------CTTTTCCATTTGATAA---------CCTAGAAATAATTACTTCAGTGAAATACTTCAAAAGGAAGAAATCCCATTAAGATT---GGTAGGAA-------------------------------------------------------------AGAGTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28481613 582 -  71996105 AATAGATTTTGTTCTTGTCATTTGGAAGAGCAC----AGTGGAAATA--------CATGAAGGATGGGCAGATGTGTGAAGGCTTCAAATGAATGTATGTAGCTG-TTAGAAAAA----CAAATGTTTCTGTTAAACACAAGTTGAAAGATG----------------GGGGAGTAGAGGAAGTATAAGAAAAATTATGGATTTATAATGAGGAGAGTTGATGTTATGGATAAAGTCGGCAGAACACTGCCTTCTTACAT-CATTAGCAAACTTTCTACTTTGTCACCCCTATTTCAAAATTGACAGTCTGATAGCTAGTT--------TATTTTATATTTGT----CCCCAGGTTGTGCTCTACCTTTTTTTCCC----ATTTTCCTTCTGCTG-------AATATTCTGA-TTT-TAAATGATGAAACAATTTAATTCTTTAATTACCTACCAAATACATCTAATTTTCTCATTCTAGGTAAGTTGTCTTCCCATTGAAGGGTGAGTGGCTCTCAATATTAGGAGACAACATAGA-AATTTCTGAAGATTTTAA-------CTTTTCCATTTGATAA---------CCTAGAAATAATTACTTCAGTCAAATACTTCAAAAGGAAGAAACCCCATTAAGATG---GGTAGGAA-------------------------------------------------------------AGAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2188763 582 +   2316924 AATAGATTTTGTTCTTGTCATTTGGAAGAGCAC----AGTGGAAATA--------CATGAAGGATGGGCAGATGTGTGAAAGCTTCAAATGAATGTATGTAGTTG-TTAGAAAAA----CAAATGTTTCTGTTAAACACAAGTTGAAAGATG----------------GGGGAGCGGAGGAAGTATAAGAAAAATTATGGATTTATAATGAGGAGAGTTGATGTTATGGATAAAGTCGACAGAACACTGCCTTCTTACAT-GATTAGCAAACTTTCTACTTTGTCACCCCTATCTCAAAATTGACGGTCTGATAGCTAGTT--------TATTTTATATTTGT----CCCCAGGTTGTGCTCTACCTTCTTTTTCC----ATTTTCCTTCTGCTG-------AATATTCTGA-TTT-TAAATGGTGAAACGATTTAATCCTTTAATTACCTACCAAATACATCTAATTTTCTCATTCTAGGTAAGTTGTCTTCCCATTGAAGGGTGAGTGGCTCTCAACATTAGGAGACAACATAGA-AATTTCTGAAGATTTTAA-------CTTTTCCATTTGATAA---------CCTAGAAATAATTACTTCAGTCAAATACTTCAAAAGGAAGAAATCCCATTAAAATC---GGTAGGAA-------------------------------------------------------------AGAGTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2070009 583 -   3067355 AATAGATTTTGTTCTTGTCATTTGGAAGAGCAC----AGTGGAAATA--------CATGAAGGATGGGCAGATGTGTGAAGGCCACAAATGAATGTATGTAGTTG-TTAGAAAAA----CAAATGTTTCTGTTAAACACAAGTTGAAAGATG----------------GGGGAGCAGAGGAAGTATAAGAAAGATTATGGATTTATAATGAGGAGAGTTGATGTTATGGATAAAGTCGACAGAACATTGCCTTCTTACAT-CATTAGCAAACTTTCTCCTTTGTCACCTCTATCTCAAAATTGACGGTCTGATAGCTAGTT--------TATTTTATATTTGT----CACCAGGTTGTGCTCTACCTTCTTTTTCC----GTTTTCCTTCTGCTG-------AATATTCAGATTTT-TAAATGATGAAACGATTTAATCCTTTGGTTACCTACCAAATACATCTAATTTTCTCATTCTAGGTAAGTTGCCTTCCCGTTGAAGGGTGAGTGGCTCTCAATATTAGGAGACAACATAGA-AATTTCTGAAGATTTTAA-------CTTTTCCATTTGATAA---------CCTAGAAATAATTACTTCAGTCAAATACCTCAAAAGGAAGAAATCCCATTAAGATT---GATAGGAA-------------------------------------------------------------AGAGTC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1757888 666 -   2232465 AATAGATTTTGTTCTTGCCTTTGGAAGGAA-------AGGGCAAATA--------TGCCAAGT-CGAGTAGATGAATGAAGACTGCACATGAATGCATTTAGTTG-TCTGAAAAA----CAAATCTTTGCCTTACACACAAATTGAAAGATAAGAGTATTGTAAGGATGGAGAGCAGA-AAGGTATGAGAAA-ATGACAAATTTATGATAAG---------TGTT-TAGCTAAAGTCCATAGAATATCTCTGTCTCACAT-CATCATCAGACTTTCTACTTCATCATTTCTGTCTCAAAATTGATGGCCTGATAGAGAATTAAAAAAAATACTTT------------CCC----TTATGCCATTCTTCATTTTCCCCCTGATTTTCTTTCCACTAATAACCTATTATTTTGA-TTCATAAATGATTGAACTATTTTATATCTTGGTTCTTTACCAAA-ACATTTGATTTTCTCATTCGAGGTAGATTATCTCTCTAGTGAAGTCTGAGTGATTCTCAATACCAGAGGACAACAAAGA-AAATTTTCAGGATCTTAATCATCAGTTTTTTCCTTTAATGGAAATGTTTCCCTAGAAAATATTACTTTAGTCAAATGCCTCACAAGGATCTAATCCCATAGAAACC---TATAAGAAAGAAAGAATCAGatattatttttatttatttacttattttattGAtttatttttttgagacagagtc
i otoGar3.GL873742         C 0 I 245
s dasNov3.JH570037            335035 622 -    859332 AGCAGGTTTCGTTCTGGCCATTTTGGAGTGAAC----AGTGTAAATATACCATGGCATCAAGGACAAGCAGATGTATGAAGACCTTAAACGAATGCTCTTGGCTGTTTAGAAAAAGAGTTAAATATTTACCTTAGACACAAGTTGAAAGATGAAGGCTTTGGAAGGATGTGGAGCAGA-GAAGTGTGAGAAA-ATGGCAGATTTATATTGAGGACAGTCCATATTA-AGATAATATCAACAAAATCTCCTCATCTTCCCCACGTCATCAATCTTTCTATGTGATCACCACCATTTCAAACTTTATGGTCTCATAGCCAACT--------TTTAAAATACTCCCCCCACCCCATATTTTGTTCCACTTTATTTTTCC----ATTTTCCTTTCACTTAGCACCCAATGCTCTGA-TTCCTAAATGAATGGACTACTTCACCCTTTG-------ACTAAACACATCTCATTTTCC--TTTTAAGCAGTTTATATCCTAAAT-AACACTGAGTGACTCTTTGTGGTAGGACAAACCATTGAGAGTTTATCAGGATTTTAATCCTCAGCGTTTCCCTTTGAGAA---------CCTAGAATTGCTTTCTTCAGGCAAATACTTCAAAAGGAAGGAAGGACATTGAGATCATGGGGTAGAA-------------------------------------------------------------AGAGTC
i dasNov3.JH570037         I 19697 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171603481 37208 - 171630274 T

a score=9796093.000000
s hg38.chr6_GL000254v2_alt    337011 1395 +   4827813 AGATATTATTTTTGAATTATTTTATTTGTAAAGGAT----CAGTGAATTTGTGGTTGAG---AGGGTCAGTTATGGAATATGAGATATTAACCTATTTGATCTTGCTGG----CAATCCATAAAA--AGTTAATTTGCAAATAAAAGATTAGCCTTTAAATCACA-TTCATAATAAC----AAGAAGGTAAACTGCAGTCTATATTACTCATATATATTTTTCAAAGTAACACATAAAATGATAGGACTTGA---TTTTTGCTCTGAGTAAATGAGTCAGTCTATTAACATTTATTTATTGCCCACTTTTTAGA---TGCCTATGGATATTTCTAGATAAA-TACAAAGGAATATAAGGACATAGTTCTCACTACCATGCAAATTGCAGACAATCTGAGGATTAGGATTCACACTTGAAATGATATC-------CAACAAACCCCATT-GTGTGGT-----ACAAAAGCATATATGTAGACAGGGTGGGTAGTAAAGAATGCTAACAATTTTGGAGGAGGTTAAATCAACATGTAATTTTAGAACAGGAGATCTTCTGACCTGTATATGAAGAATGTGGAGTATAAAAATAATTACTTTTGTTCTCTTC-CT-GGTGATACAAAAAGACAAGAAGCCTCCTCATTGCCCCTTTTATGTCCCTGTTGCTCAAAGTGTAGATAAAAGGGTTAAGCATAGGAGTCACCAAACTGTAGAACAGGGACATGAATTTGTTTTTGTCCTGGGAGTTG---GCAGAGGGCTGTACATACATGCTAATTACAGGCCCATAGAGGAGAGATACAAT------ATGAGAACCACATGTGTTGAAGACCTCCTTCTTTCCCCCTGAGGACTGAATCCTCAGCACAGTAGCTACAATGAATCCACAGTAAACAAAGATAATTGATTAGAGAACGAGGGACTAAAATATCCTCACAATGGAGAGCATAGATACATTGAATGTGGTGTCAAAACATGATATCTTGATCATCGCTGAG-------ACCTCACACAGAAA---GTCGTCCACC---TTGTTACCGCCTAGTGGCAGCTGGACGGCAAGGGATGACTGAAGTA--GAGTTGGCCAAACTGCTTAGCCATGCCATGGCCACTAGGAGGACACAGAGTTGCTGATGCATGATAGCTGGGTACCTCAAGTGTTTGCAGATGGCAATGTAAGGATCCAAAGACGTCACAGCTAAAATGATGCATTTGGT-GCTCCCCTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCCCCTGGGTACCACAATAATTGAGATGTTGTCCACCAGTATGCAGAGATAAGCAACAAGCCCCATTATGAAGAGAAACATTTCCGGCTAGGGGTGGTCAAAGAAACCCCAGAGAATGAAGATCTTTCGAGCAATTGCATTGCCCAGATTC----CTGTCATTGCTCTTGTTGGTGGATTTGAGGGAAAGGAAAGGC---TACTTTAGTATTGAATTTTTCTGAT
s panTro5.chr6              29311748 1395 + 175400573 AGATATTATTTTTGAATTATTTTATTTGTAAAGGAT----CAATGAATTTGTGGTTGAG---AGGGTCAGTTATGGAATATGAGATATTAACCTATTTGATCTTGCTGG----CAATCCATAAAA--AGTTAATTTGCAAATAAAAGATTAGCCTTTAAATCACA-TTCATAATAAC----AAGAAGGTAAACTGCAGTCTATATTACTCATATATATTTTTCAAAGTAACACATAAAATGATAGGACTTGA---TTTTTGCTCTGAGTAAATGagtcagtctattaacatttatttattgcccactttttaga---tgcctatggatatttctagataaa-tacaaaggaatataaggacatagttctcactaccatgcaaattgcagacaatctgaggattaggattcacacttgaaatgatATC-------CAACAAACCCCATT-GTGTGGT-----ACAAAAGCATATATGTAGACAGGGTGGGTAGTAAAGAATGCTAACAATTTTGGAGGAGGTTAAATCAACATGTAATTTTAGAACAGGAGATCTTCTGACCTGTATATGAAGAATGTGGAGTATAAAAATAATTACTTTTGTTCTCTTC-CT-GGTGATACAAAAAGACAAGAAGCCTCCTCATTGCCCCTTTTATGTCCCTGTTGCTCAAAGTGTAGATAAAAGGGTTAAGCATAGGAGTCACCAAACTGTAGAACAGGTACATGAATTTGTTTTTGTCCTGGGAGTTG---GCAGAGGGCTGTACATACATGCTAATTACAGGCCCATAGAGGAGAGATACAAT------ATGAGAACCACATGTGTTGAAGACCTCCTTCTTTCCCCCTGAGGACTGAATCCTCAGCACAGTAGCTACAATGAATCCACAGTAAACAAAGATAATTAATTAGAGAACGAGGGACTACAATATCCTCACAATGGAGAGCATAGATACATTGAATGTGGTGTCAAAACATGATATCTTGATCATCGCTGAG-------ACCTCACACAGAAA---GTCGTCCACC---TTGTTACCGCCTAGTGGCAGCTGGACGGCAAGGGATGACTGAAGTA--GAGTTGGCCAAACTGCTTAGCCATGCCATGGCCACTAGGAGGACACAGAGTTGCTGATGCATGATAGCTGGGTACCTCAAGTGTTTGCAGATGGCAATGTAAGGATCCAAAGACATCACAGCTAAAATGATGCATTTGGT-GCTCCCCTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCCCCTGGGTACCACAATAATTGAGATGTTGCCCACCAGTATGCAGAGATAAGCAACAAGCCCCATTATGAAGAGAAACATTTCCGGCTAGGGGTGGTCAAAGAAACCCCAGAGAATGAAGATCTTTCGAGCAATTGCATTGCCCAGATTC----CTGTCATTGCTCTTGTTGGTGGATTTGAGGGAAAGGAAAGGC---TACTTTAGTATTGAATTTTTCTGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29557737 1395 + 173848474 AGATATTATTTTTGAATTATTTTATTTGTAAAGGAT----CAATGAATTTGTGGTTGAG---AGGGTCAGTTATGGAATATGAGATATTAACCTATTTGATCTTGCTGG----CAATCCATAAAA--AGTTAATTTGCAAATAAAAGATTAGCCTTTAAATCACA-TTCATAATAAC----AAGAAGGTAAACTGCAGTCTATATTACTCATATATATTTTTCAAAGTAACACATAAAATGATAGGACTTGA---TTTTTGCTCTGAGTAAATGagtcagtctattaacatttatttattgcccactttttaga---tgcctatggatatttctagataaa-tacaaaggaatataaggacatagttctcactaccatgcaaattgcagacaatctgaggattaggattcacacttgaaatgatATC-------CAACAAACCCCATT-GTGTGGT-----ACAAAAGCATATATGTAGACAGGGTGGGTAGTAAAGAATGCTAACAATTTTGGAGGAGGTTAAATCAACATGTAATTTTAGAACAGGAGATCTTCTGACCTGTATATGAAGAATGTGGAGTATAAAAATAATTACTTTTGTTCTCTTC-CT-GGTGATACAAAAAGACAAGAAGCCTTCTCATTGCCCCTTTTATGTCCCTGTTGCTCAAAGTGTAGATAAAAGGGTTAAGCATAGGAGTCACCAAACTGTAGAACAGGGACATGAATTTGTTTTTGTCCTGGGAGTTG---GCAGAGGGCTGTACATACATGCTAATTACAGGCCCATAGAGGAGAGATACAAT------ATGAGAACCACATGTGTTGAAGACCTCCTTCTTTCCCCCTGAGGACTGAATCCTCAGCACAGTAGCTACAATGAATCCACAGTAAACAAAGATAATTAATTAGAGAACGAGGGACTAAAATATCCTCACAATGGAGAGCATAGATACATTGAATGTGGTGTCAAAACATGATATCTTGATCATCGCTGAG-------ACCTCACACAGAAA---GTCGTCCACC---TTGTTACCGCCTAGTGGCAGCTGGACGGCAAGGGATGACTGAAGTA--GAGTTGGCCAAACTGCTTAGCCATGCCATGGCCACTAGGAGGACACAGAGTTGCTGATGCATGATAGCTGGGTACCTCAAGTGTTTGCAGATGGCAATGTAAGGATCCAAAGACATCACAGCTAAAATGATGCATTTGGT-GCTCCCCTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCCCCTGGGTACCACAATAATTGAGATGTTGCCCACCAGTATGCAGAGATAAGCAACAAGCCCCATTATGAAGAGAAACATTTCCGGCTAGGGGTGGTCAAAGAAACCCCAGAGAATGAAGATCTTTCGAGCAATTGCATTGCCCAGATTC----CTGTCATTGCTCTTGTTGGTGGATTTGAGGGAAAGGAAAGGC---TACTTTAGTATTGAATTTTTCTGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5355064 1398 +   6154872 AGATATTATTTTTGAATTATTTTATTTGTAAAGGAT----CAGTGAATTTGTGGTTGAG---AGGGTCAGTTATGGAATATGAGATATTAACCCATTTGATCTTGCTGGCAATCAATCCATAAAA--AGTTAATTTGCAAATAAAAGATTAGCCTTTAAATCACA-TTCATAATAAC----AAGAAGGTAAACTGCAGTCTATATTACTCATATATATTTTTCAAAGTAACACATAAAATGATAGGACTTGA---TTTTTGCTCTGAGTAAATGAGTCAGTCTATTAACATTTATTTATTGCCCACTTTTTAGA---TGCCTATGGATATTTCTAGATAAA-TACAAAGGAACATAAGGACATAGTTCTCACTACCATGCAAATTGCAGACAATCTGAGGATTAGGATTCACACTTGAAATGATATC-------CAACAAACCCCACT-GTGTGGT-----ACAAAAGCATATATGTAGACAGGGTGGGTAGTAAAGAATGCTAACAATTTTGGAGGAGGTTAAATCAACATGTAATTTTAGAACAGGAGATCTTCTGACCTGTATATGAAGAATGTGGAGTATAAAAATAATTACTTTTGTTCTCTTC-CT-GGTGATACAAAAAGACAAGAAGCCTCCTCATTGCCCCTTTTATGTCCCTGTTGCTCAAAGTGTAGATAAAAGGGTTAAGCATAGGAGTCACCAAACTGTAGAACAGGGACATAAATTTGTTTTTGTCCTGGGAGTTG---GCAGAGGGCTGTACATACATGCTAATTACAGGCCCATAGAGGAGAGATACAAT------ATGAGAACCACATGTGTTGAAGACCTCCTTCTTTCCCCCTGAGGACTGAATCCTCAGCACAGTAGCTACAATGAATCCACAGTAAACAAAGATAATTGATTAGAGGACGAGGGACTAAAATATCCTCACAATGGAGAGCATAGATACATTGAATGTGGTGTCAACACATGATATCTTGATCATCGCTGAG-------ACCTCACACAGAAA---GTCGTCCACC---TTGTTACCGCCTAGTGGCAGCTGGATGGCAAGGGATGACTGAAGTA--GAGTTGGCCAAACTGCTTAGCCATGCCATGGCCACTAGGAGGACACAGAGTTGCTGATGCATGATAGCTGGGTACCTCAAGTGTTTGCAGATGGCAATGTAAGGATCCAAAGACATCACAGCTAAAATGATGCATTTGGT-GCTCCCCTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCCCCTGGGTACCACAATAATTGAGATGTTGCCCACCAGTATGCAGAGATAAGCAACAAGCCCCATTATGAAGAGAAACATTTCCGGCTAGGGGTGGTCAAAGAAACCCCAGAGAATGAAGATCTTT-GAGCAATTGCATTGCCCAGATTC----CTGTCATTGTTCTTGTTGGTGGATTTGAGGGAAAGGAAAGGC---TACTTTAGTATTGAATTTTTCTGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74368630 1401 + 122973662 AGATATTATTTTTGAATTAATTTATTTGTAAAGGAT----CAGTGAATTTGTTGTTGAG---AGGGTCCGTTATAGAATATGAGGTATTAACCCATTTGATCTTGCTGCAAATGAATCGATAAAAAGAGTTAATTTGCAAATAAAAGATTAGCCTTTAAATCACA-TTCATAATAAC-------AAGGTAAACTGCAGTCTATATTACTCATATATATTTTTCAAAGTAACACATAAAATGATAGGACTTGA---TTTTTGCTCTGAGTAAATGAGTCAGTCTATTAACATTTATTTATTGCCCACTTTTTAGA---TGCCTATGGATATTTCTAGATAAA-TGCAAAGGAATATAAGGACATGGTTCTCACTACCATGCAAATTGCAGACAATCTGAGGATTAGGATTCACACTTGAAACAATATC-------CAACAAACCATATTGGTGTGGT-----ACAAAAGCATATATGTAGACAGGGTGGGTGGTAAAGAATGCTAACAATTTTGGAGGAGGTTAAATCAACATGTAATTTTAGAACAGGAGATCTTCTGACCTGTATATGAAGAATGTAGAGTATAAAAATAATTACTTTTGTTCTCTTC-CT-GGTGATACGAAAAGACAAGAAGCCTCCTCATTGCCCCTTTTATGTCCCTGTTGCTCAAAGTGTAGATAAAAGGGTTAAACATAGGAGTCACCAAACTGTAGAACAAGGACATGAATTTGTTTTTCTCCTGGGAGTTG---GCAGAGGGCTGTACATACATGCTAATTACAGGCCCATAGAGGAGAGATACAGT---ATCATGAGAACCACATGTGTTGAAGACCTCCTTCTTTCCCC--GAGTACTGAATCCTCAGCACAGTAGCCACAATGAATCCACAGTAAACAAAGATAATTGATTAGAGAACGAGGGACTAAAATATCCTCACAATGGAGAGCATAGATACATTGAATGTGGTGTCAACACACGATATCTTGATCATCGCTGAG-------GCCTCACACAGAAA---GTCGTCCACC---TTGTTACCGCCTAGTGGCAGCTGGACGGCAAGGGATGACTGAAGTA--GAGTTGGCCAAACTGCTTAGCCATGCCATGGCCACTAGGAGGACACAGAGTTGCTGATGCATGATAGCTGGGTACCTCAAGTGTTTGCAGATGGCAATGTAAGGATCCAAAGACATCACAGCTAAAATGATGCATTTGGT-GCTCCCCTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCCCCTGGGTACCACAGTAATTGAGATGTTGCCCGCCAGTATGCAGAGATAAGCAACAAGCCCCATTCTGAAGAGAAACATTTCTGGCTAGGGATGGTCAAGGAAACCCCAGAGAATGAAGATCTTTGGAGCAATTACATTGCCCAGATTC----CTGTCATTGCTCTTGTCGGTGGATTTGAGGGAAAGGAAAGGCT--TACTTTAGTATTGAATTTTTCTGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29517571 1418 + 172585720 AGATATTATTTTTGAATTATTTTATTTATAAAGGAT----CAGTGAATGTGTGGTTGAG---AGGGTCAGTTATAGGATATGAGATATTAATTCATTTGATCTTACTGG----CAATCCATAAAAAGAGTTAATTTGCAAATAAAAGATTGGCCTTTAAATCACA-TTTATAATAAC----AAGAAGGTAAACAGCAGTCTATATTACTCATATATATTTTTCAAAATAACACATAAAATGATAGGACTTGA---TTTTTATTCTGAGTAAATGagtcagtctattaacatttatttattgcccactttttaga---tgcctgcggatatttctagataaa-tacaaaggaatataaggacatggttctcactaccatgcaaattgcagacaatctgaggattaggattcacgcttgaaatgatatc-------catcaaaccatactggtgtagt-----acaaaagcaaatatgtagacagggtgggtagtaaagaatgctaacaattttggagaaggTTAAATCAACATGTAATTTTAGAACAGGAGATCTTCTGACCTGTATGTGAAGAATGTGGAGGATAAAAATAATTACTTTTGTTCTCTTC-CT-GATGATACAAAAAGACAAGAAGCCTCCTCATTGCCCCTTTTATATCCCTGTTCCTCAAAGTGTAGAAAAAAGGGTTAAGCATAGGAGTCACCAAACTGTAGAACAGGGACATGAATTTGTTTTTGTCCTGGGAGTTG---GCAGAGGGCTATACATACATTCTAATTACTGGCCCATAGAGGAGAGATACAACAGTATCATGAGAACCACATGTGTTGAAGGCCTCCTTCTTTTCCCCTGAGGACTGAATCCTCAGCACAGTAGCTACAATGAATTCACAGTAAACAAAGATAATTGATTAGAGAACCAGGGACTAAAATATCCTCACAATGGAGAGCATAGATACATTGAATGTGGTCTCAACACACAATATCTTGATCATCGCTGTGTGAGACAACCTCACACAGAAA---GTCGTCTACCTTGTTGTTACCGCCTAGTGGCAGCTGGACGGCAAGGGATGACTGAAGTA--GAGTTGGCCAAACTGCTTAGCCATGCCATGGCCACTAGGAGGACACAGAGTTGCTGATGCATGATAGCGGGGTACCTCAAGTGTTTGCAGATGGCAATGTAAGGATCCAAAGACATCACAGCTAAAATGATGCATTTGGT-GCTCCCCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCCCCTGGGTACTACAATAATTGAGATGTTGCCCAGCAGTGTGCAGAGATAAGCAACAAGCCCCGTTATGAAGAGAAGCATTTCCAGCT-GGGGTGGTCAAAGAAACCCCAGATAATGAAGATCTTTGGAGTAATTGCATTGCCCAGATTCCTAACTGTCATTGCTCTTGTAGGTGTATTTGAGGGAAAGGAAAGGCT--TACTTTAGTACTGAATTTTTCTGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29178683 1418 - 170955103 AGATATTATTTTTGAATTATTTTATTTATAAAGGAT----CAGTGAATGTGTGGTTGAG---AGGGTCAGTTATAGGATATGAGATATTAATTCATTTGATCTTACTGG----CAATCCATAAAAAGAGTTAATTTGCAAATAAAAGATTGGCCTTTAAATCACA-TTTATAATAAC----AAGAAGGTAAACAGCAGTCTATATTACTCATATATATTTTTCAAAATAACACATAAAATGATAGGACTTGA---TTTTTATTCTGAGTAAATGAGTCAGTCTATTAACATTTATTTATTGCCCACTTTTTAGA---TGCCTGCGGATATTTCTAGATAAA-TACAAAGGAATATAAGGACATGGTTCTCACTACCATGCAAATTGCAGACAATCTGAGGATTAGGATTCACGCTTGAAATGATATC-------CATCAAACCATACTGGTGTAGT-----ACAAAAGCAAATATGTAGACAGGGTGGGTAGTAAAGAATGCTAACAATTTTGGAGAAGGTTAAATCAACATGTAATTTTAGAACAGGAGATCTTCTGACCTGTATGTGAAGAATGTGGAGGATAAAAATAATTACTTTTGTTCTCTTC-CT-GATGATACAAAAAGACAAGAAGCCTCCTCATTGCCCCTTTTATATCCCTGTTCCTCAAAGTGTAGAAAAAAGGGTTAAGCATAGGAGTCACCAAACTGTAGAACAGGGACATGAATTTGTTTTTGTCCTGGGAGTTG---GCAGAGGGCTATACATACATTCTAATTACTGGCCCATAGAGGAGAGATACAACAGTATCATGAGAACCACATGTGTTGAAGGCCTCCTTCTTTTCCCCTGAGGACTGAATCCTCAGCACAGTAGCTACAATGAATTCACAGTAAACAAAGATAATTGATTAGAGAACCAGGGACTAAAATATCCTCACAATGGAGAGCATAGATACATTGAATGTGGTCTCAACACACAATATCTTGATCATCGCTGTGTGAGACAACCTCACACAGAAA---GTCGTCTACCTTGTTGTTACCGCCTAGTGGCAGCTGGACGGCAAGGGATGACTGAAGTA--GAGTTGGCCAAACTGCTTAGCCATGCCATGGCCACTAGGAGGACACAGAGTTGCTGATGCATGATAGCGGGGTACCTCAAGTGTTTGCAGATGGCAATGTAAGGATCCAAAGACATCACAGCTAAAATGATGCATTTGGT-GCTCCCCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCCCCTGGGTACTACAATAATTGAGATGTTGCCCAGCAGTGTGCAGAGATAAGCAACAAGCCCCGTTATGAAGAGAAGCATTTCCAGCT-GGGGTGGTCAAAGAAACCCCAGATAATGAAGATCTTTGGAGTAATTGCATTGCCCAGATTCCTAACTGTCATTGCTCTTGTTGGTGTATTTGAGGGAAAGGAAAGGCT--TACTTTAGTACTGAATTTTTCTGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2171215 1418 -   2996164 AGATATTATTTTTGAATTATTTTATTTATAAAGGAT----CAGTGAATGTGTGGTTGAG---AGGGTCAGTTATAGGATATGAGATATTAACTCATTTGATCTTACTGG----CAATCCATAAAAAGAGTTAATTTGCAAATAAAAGATTGGCCTTTAAATCACA-TTTATAATAAC----AAGAAGGTAAACTGCAGTCTATATTACTCATATATATTTTTCAAAATAACACATAAAATGATAGGACTTGA---TTTTTATTCTGAGTAAATGagtcagtctattaacatttatttattgcccactttttaga---tgcctgcggatatttctagataaa-tacaaaggaatataaggacatggttctcactaccatgcaaattgcagacaatctgaggattaggattcacgcttgaaatgatATC-------CATCAAACCATACTGGTGTAGT-----ACAAAAGCAAATATGTAGACAGGGTGGGTAGTAAAGAATGCTAACAATTTTGGAGAAGGTTAAATCAACATGTAATTTTAGAACAGGAGATCTTCTGACCTGTATGTGAAGAATGTGGAGGATAAAAATAATTACTTTTGTTCTCTTC-CT-GATGATACAAAAAGACAAGAAGCCTCCTCATTGCCCCTTTTATATCCCTGTTCCTCAAAGTGTAGATAAAAGGGTTAAGCATAGGAGTCACCAAACTGTAGAACAGGGACATGAATTTGTTTTTGTCCTGGGAGTTG---GCAGAGGGCTATACATGCATTCTAATTACTGGCCCATAGAGGAGAGATACAACAGTATCATGAGAACCACATGTGTTGAAGGCCTCCTTCTTTTCCCCTGAGGACTGAATCCTCAGCACAGTAGCTACAATGAATTCACAGTAAACAAAGATAATTGATTAGAGAACCAGGGACTAAAATATCCTCACAATGGAGAGCATAGATACATTGAATGTGGTCTCAACACACAATATCTTGATCATCGCTGTGTGAGACAACCTCACACAGAAA---GTCGTCTACCTTGTTGTTACCGCCTAGTGGCAGCTGGATGGCAAGGGATGACTGAAGTA--GAGTTGGCCAAACTGCTTAGCCATGCCATGGCCACTAGGAGGACACAGAGTTGCTGATGCATGATAGCGGGGTACCTCAAGTGTTTGCAGATGGCAATGTAAGGATCCAAAGACATCACAGCTAAAATGATGCATTTGGT-GCTCCCCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCCCCTGGGTACTACAATAATTGAGATGTTGCCCAGCAGTGTGCAGAGATAAGCAACAAGCCCCGTTATGAAGAGAAGCATTTCCAGCT-GGGGTGGTCAAAGAAACCCCAGATAATGAAGATCTTTGGAGTAATTGCATTGCCCAGATTCCTAACTGTCATTGCTCTTGTTGGTGTATTTGAGGGAAAGGAAAGGCT--TACTTTAGTACTGAATTTTTCTGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2051657 1414 -   2157725 AGATATTATTTTTGAATTATTTTATTTATAAAGGAT----CAGTGAATGTGTGGTTGAG---AGGGTCAGTTATAGAATATGAGATATTAACTCATTTGATCTTACTGG----CAATCCATAAAAAGAGTTAATTTGCAAATAAAAGATTGGCCTTTAAATCACA-TTTATAATAAC----AAGAAGGTAAACTGCAGTCTATATTACTCATATATATTTTTCCAAATAACACATAAAATGATAGGACTTGA---TTTTTGTTCTGAGTAAATGagtcagtctattaacatttatttattgcccactttttaga---tgcctgtggatatttctagataaa-tgcaaaggaatataaggacatggttctcactaccatgcaaattgcagacaatctgaggattaggattcacgcttgaaatgatATC-------CATCAAACCATACTGGTGTGGT-----ACAAAAGCAAATATGTAGACAGGGTGGGTAGTAAAGAATGCTAACAATTTTGGAGGAGGTTAAATCAACATGTAATTTTAGAACAGGAGATCTTCTGACCTGTGTGTGAAGAATGTGGAGTATAAAAATAATTACTTTTGTTCTCTTC-CT-GATGATACAAAAAGACAAGAAGCCTCCTCATTGCCCCTTTTATATCCCTGTTCCTCAAAGTGTAGATAAAAGGGTTAAGCATAGGAGTCACCAAACTGTAGAACAGGGACATGAATTTGTTTTTGTCCTGGGAGTTG---GCAGAGGGCTGTACATACATTCTAATTACTGGCCCATAGAGGAGAGATACAACAGTATCATGAGAACCACATGTGTTGAAGGCCTCCTTCTTTCCCCCTGAGGACTGAATCCTCAGCACAGCAGCTACAATGAATTCACAGTAAACAAAGATAATTGATTAGAGAACCAGGGACTAAAATATCCTCACAATGGAGAGCATAGATACATTGAATATGGTGTCAACACACGATATCTTGATCATCGCTGAG-------GCCTCACACAGAAAGTCGTCGTCCACCTTGTTGTTACCGCCTAATGGCAGCTGGACGGCAAGGGATGACTGAAGTA--GAGTTGGCCAAACTGCTTAGCCATGCCATGGCCACTAGGAGGACACAGAGTTACTGATGCATGATAGCGGGGTACCTCAAGTGTTTGCAGATGGCAATGTAAGGATCCAAAGACATCACAGCTAAAATGATGCATTTGGT-GCTCCCCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCCCCTGGATATCACAATAATTGAGATGTTGCCCAGCAGTGTGCATAGATAAGCAACAAGCCCTGTTATGAAGAGAAGCATTTCCGGCT-GTGGTGGTCAAAGAAACCCCAGAGAATGAAGATCTTTGGAGCAATTGCATTGCCCAGATTCCTAACTGTCATTGCTCTTGTTGGTGTATTTGAGGGAAAGGAAAGGCT--TACTTTAGTATTGAATTTTTCTGAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28482195 1411 -  71996105 AGATATTATTTTTGAATTATTTTATTTACAAAGGAT----CAGTGAATGTGTGGTTGAG---AGGGTCAGTTATAGAATATGAGATATTAACTCATTTGATCTTACTGG----CAATCCATAAAAAGCGTTAATTTGCAAATAAAAGATTGGCCTTTAAATCACA-TTTATAATAAC----AAGAAGGTAAACTGCAGTCTATATTACTCATATATATTTTTCCAAATAACACATAAAATGATAGGACTTGA---TTTTTGTTCTGAGTAAATGAGTCAGTCTATTAACATTTATTTATTGCCCACTTTTTAGA---TGCCTGCGGATATTTCTAGATAAA-TACAAAGGAATATAAGGACATGGTTCTCACTACCATGCAAATTGAAGACAATCTGAGGATTAGGATTCACGCTTGAAATGATATC-------CATCAAACCACACTGGTGTGCT-----ACAAAAGCAAATATGTAGACAGGGTGAGTAGTAAAGAATGCTAACAATTTTGGAGGAGGTTAAATCAACATGTAATTTTAGAACAGGAGATCTTCTGACCTGTGTGTGAAGAATGTGGAGTATAAAAATAATTACTTTTGTTCTCTTC-CT-GATGATACAAAAAGACAAGAAGCCTCCTCATTGCCCCTTTTATATCCCTGTTCCTCGAAGTGTAGATAAAAGGGTTAAGCATAGGAGTCACCAAACTGTAGAACAGGGACATGAATTTGTTTTTGTCCTGGGAGTTG---GCAGAGGGCTGTACATACATTCTAATTACTGGCCCATAGAGGAGAGATACAACAGTATCATGAGAACCACATGTGTTGAAGGCCTCCTTCTTTCCCCCTGAGGACTGAATCCTCAGCACAGCAGCTACAATGAATTCACAGTAAACAAAGATAATTGATTAGAGAACCAGGGACTAAAATATCCTCACAATGGAGAGCATAGATACACTGAATGTGGTGTCAACACACGATATCTTGATCATCGCTGAG-------ACCTCACACAGAAA---GTCGTCTACCTTGTTGTTACCGCCTAGTGGCAGCTGGACGGCAAGGGATGACTGAAGTA--GAGTTGGCCAAACTGCTTAGCCATGCCATGGCCACTAGGAGGACACAGAGTTGCTGATGCATGATAGCGGGGTACCTCAAGTGTTTGCAGATGGCAATGTAAGGATCCAAAGACATCACAGCTAAAATGATGCATTTGGT-GCTCCCCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCCCCTGGGTACCACAATAATTGAGATGTCGCCCAGCAGTGTGCAGAGATAAGCAACAAGCCCCGTTATGAAGAGAAGCATTTCCAGCT-GGGGTGGTCAAAGAAACCCCAGAGAATGAAGATCTTTGGAGCAATTGCATTGCCCAGATTCCTAACTGTCATTGCTCTTGTTGGTGTATTTGAGGGAAAGGAAAGGCT--TACTTTAGTATTGAATTTTTCTGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2189345 1411 +   2316924 AGATATTATTTTTGAATTATTTTATTTACAAAGGAT----CAGTGAATGTGTGGTTGAG---AGGGTCAGTTATAGAATATGAGATATTAACTCATTTGATCTTACTGG----CAATCCATAAAAAGAGTTAATTTGCAAATAAAAGATTGGCCTTTAAATCACA-TTTATAATAAC----AAGAAGGTAAACTGCAGTCTATATTACTCATATATATTTTTCCAAATAACACATAAAATGATAGGACTTGA---TTTTTGTTCTGAGTAAATGagtcagtctattaacatttatttattgcccactttttaga---tgcctgcggatatttctagataaa-tacaaaggaatataaggacatggttctcactaccatgcaagttgcagacaatctgaggattaggattcacgcttgaaatgatATC-------CATCAAACCATACTGGTGTGGT-----ACAAAAGCAAATATGTAGACAGGGTGGGTAGTAAAGAATGCTAACAATTTTGGAGGAGGTTAAATCAACATGTAATTTTAGAACAGGAGATCTTCTGACCTGTGTGTGAAGAATGTGGAGTATAAAAATAATTACTTTTGTTCTCTTC-CT-GATGATACAAAAAGACAAGAAGCCTCCTCATTGCCCCTTTTATATCCCTGTTCCTCAAAGTGTAGATAAAAGGGTTAAGCATAGGAGTCACCAAACTGTAGAACAGGGACATGAATTTGTTTTTGTCCTGGGAGTTG---GCAGAGGGCTGTACATACATTCTAATTACTGGCCCATAGAGGAGAGATACAACAGTATCATGAGAACCACATGTGTTGAAGGCCTCCTTCTTTCCCCCTGAGGACTGAATCCTCAGCACAGCAGCTACAATGAATTCACAGTAAACAAAGATAATTGATTAGAGAACCAGGGACTAAAATATCCTCACAATGGAGAGCATAGATACACTGAATGTGGTGTCAACACACGATATGTTGATCATCGCTGAG-------ACATCACACAGAAA---GTCGTCTACCTTGTTGTTACCTCCTAGTGGCAGCTGGACGGCAAGGGATGACTGAAGTA--GAGTTGGCCAAACTGCTTAGCCATGCCATGGCCACTAGGAGGACACAGAGTTACTGATGCATGATAGCGGGGTACCTCAAGTGTTTGCAGATGGCAATGTAAGGATCCAAAGACATCACAGCTAAAATGATGCATTTGGT-GCTCCCCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCCCCTGGGTACCACAATAATTGAGATGTCGCCCAGCAGTGTGCAGAGATAAGCAACAAGCCCCGTTATGAAGAGAAGCATTTCTGGCT-GGGGTGGTCAAAGAAACCCCAGAGAATGAAGATCTTTGGAGCAATTGCATTGCCCAGATTCCTAACTGTCATTGCTCTTGTTGGTGTATTTGAGGGAAAGGAAAGGCT--TACTTTAGTATTGAATTTTTCTGAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2070592 1411 -   3067355 AGATATTATTTCTGAATTATTTTATTTATAAAGGAT----CAGTGAATGTGTGGTTGAG---AGGGTCAGTTATAGAATATGAGATATTAACTCATGTGATCTTACTGG----CAATCCATAAAAAGAGTTAATTTGCAAATAAAAGATTGGCCTTTAAATCACA-TTTATAATAAC----AAGAAGGTAAACTGCAGTCTATATTACTCATATATATTTTTCAAAATAACACATAAAATGATAGGACTTGA---TTTTTGTTCTGAGTAAATGagtcagtctattaacatttatttattgcccactttttaga---tgcctgcggatatttctagataaa-tacaaaggaatataaggacatggttctcactaccatgcaaattgcagacaatctgaggattaggattcacgcttgaaatgatATC-------CATCAAACCATACTGGTGTGGC-----ACAAAAGCAAATATGTAGACAGGCTGGGTAGTAAAGAATGCTAACAATTTTGGAGAAGGTTAAATCAACAGGTAATTTTAGAACAGGAGATATTCTGACCTGTATGTGAAGAATGTGGAGTATAAAAATAATTACTTTTGTTCTCTTC-CT-GATGATATAAAAAGACAAGAAGCCTCCTCATTGCCCCTTTTATATCCTTGTTCCTCAAAGTGTAGATAAAAGGGTTATGCATAGGAGTCACCAAACTGTAGAACAGGGACACGAATTTGTTTTTGTTCTGGAAGTTG---GCAGAGGGCTGTACATACATTCTAATTACTGGCCCATAGAGGAGAGATACAACAGTATCATGAGAATCACATGTGTTGAAGGCCTTCTTCTTTCCCCCTGAGGACTGAATCCTCAGCACAGTAGCTACAATGAATTCACAGGAAACAAAGGTAATTGATTAGAGAACCAGGGACTAAAATATCCTCACAATGGAGAGCACAGATACATTGAATGTGGTGTCAACACATGATAACTTGATCATCGCTGAG-------ACCTAACACAGAAA---GTCGTCTACCTTGTTGTTACCTCCTAGTGGCAGCTGGACGGCAAGGGATGACTAAAGTA--GAGTTGGCCAAACTGCTTAGCCATGCCATGGCCACTAGGAGGACACAGAGTTGCTGATGCATGATAGCTGGGTACCTCAAGTGTTTGCAGATGGCAATGTAAGGATCCAAAGACATCACAGCTAAAATGATGCATTTGGT-GCTCCCCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCCCCTGGGTACCACAGTAATTGAGATGTTGCCCAGCAGTGTGCAGAGATAAGCAACAAGCCCCATTATGAAGAGAAGCATTTCCGGCT-GGGGTTGTCAAAGAAACCCCAGAGAATGAAGATCTTTGGAGCGATTGCATTGCCCAGATTCCTAACTGTCATTGCTCTTGTTGGTGTACTTGAGGGAAAGGAAAGGCT--TACTTTAGTATTGAATTTTTCTGAT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1758799 1577 -   2232465 AGATATTATTTTTGAATTATCTTATTTTT-CAGGGT----TGGTGAATATGTGGTTGAGAGAAGAACCTATTATAGGATATTAAATGTAAATTCATTTGATCTTGCTGG----T-GTTCATGAAA-GAGTTGATTTGCAAATGAGAGATTAATCTTTAAATCATA-TTCATAATAGC----AAAAAGGTCAACTGAGGTCTAGATTAGT--TGTATTGTTTTCAAAATAACACATAAAATGACAAGGTTTG----TTGTTTTTCTAAGTAAATGTATCAGTCGATAAGCATTTATTTATTGCCCACTTTTAAAGATTCACAGATGTATATTTCTAAATGGATTAAAAAGGAACTTAGTGACATAGTCCTCATTCTCATGCAAATAGCATGCAATCTATGGATTAGGGTTCACACATGAAATGATATC-------TGACAAACTATAGCAGTGTGGT-----AGAAAAACATATATGTAGATAGG----ACAGTAAAATATATTGAAATATTTGGAAGAGGTTAAAGTATCAGGTGATTTTAAAACAGGAGAACTTCTGAGCCATATGTGGAGATCACGGAATATAAAAATAATTATGTTTGTTCTCTTC-CTCGATGAAACAATGAGACAAGAAGCCTCCTCATTGCCCCTTTCATGTCCTTGTTCCTCAAAGTATAGATAAAAGGGTTAAGCATAGGAGTCACCAAACTGTAGAACAGGGACATAAGTTTGTTTTTGTCCTGGGAGTTGGTAGCAGAGGGTTGTACATACATGCTGATTACTGGCCCATAGAAGAGAGACACAACGATAACATGAGAACCACATGTGTTAAAGGCCTTCTTCTTTCCTTCTGAGGATCGAATTCTGAGTACAGTAGCCACAATGAATCCATAAGACACAAGGATAAGTGATAAAGGAACCAAGGTATAGAACGTCGCCACAATGGAGAGCATGGCTAGATTGAATGTGGTGTCAACACATGACATCTTGATCATCACTGGG-------ACCTCACACAGAAA---GTCATCTATCTTGCTGTTACCACAAAATGGTAGCTGGACAGTGAGGGATGACTGAAGCAAGGAATTAACCAAACCACTTAACCATGCCATGGCCACCAGAAGAATACAGAGTTGCTGGTGCATGATAGAAGGGTATCTCAAGGGCTTGCAGATGGCAATGTAACGATCTAAGGACATCACAGCTAAGAGGATACATTCAGTAGCTCCCAGGAAGA-GAAACAAGTAAAACTGGGTCACAC------------------------------------------ATCCCCCATAGGTGACGGTCTTATCTGGGCCCCACAAGTTCAACAGCAGCTGAGGAATAGTGGTTGTGGTAAAACACAAGTCCAAGAAGGAGAGGTTGGAAAGGAAG----AAGTACATAGGGCTGTCGAGATGAGGATCTACCCTGGATACCACAATGATTGAGATGTTGCCCACCAGTGTGCAGACATAGGCAATAAGCACTATTATGAAGAGAGGCATTTCCAACCAGGGATGGTTGGAGAAACCCCAGAGAATGAAGATCTTTGGAGCACTTGCATTGCCTGCATTCATGACTGTTGTTGCTCTCATTGGAGGACTCAAGTCAAAGTGAAGACTTGTATTTCAGTATTGAATTTCTCTGAT
i otoGar3.GL873742         I 245 C 0
s dasNov3.JH570037            335657 1553 -    859332 AGCTATTATTT-TGAATTATTTCATTTCCTAAGGATCAGGCAGTGAATGTGTGGTTGGG---AGGGATGATTAATGAATGGGA-ATTTAAACCCATTTAATCTTGCTGG----TAATTCATAAAAAGCATTGATTAGCAACTGACAG--------TAGAATCATAGTTTATTTTAATAGGGAAGAAGCTAAACTGTAGTCTATATTACTTGTA------CTTTAAAA--------AAAATGATAGGATTTGATTTTTTTTTTTTTGTCTGACTGTGTCAGTCAATACACATTTATTTAT--CTCACTCTTTCGA------------ATTCCTACAGATGGA-TATAGAGAAACTTAAGGACATGGTCCCCACT--TGGGCAAATTGCTGACAAATTTGGGATAAGGATTCACAGTAGAAATGATATTGAATCAAAAATAAATCATAGCAATGTGATAAATCATACGAACATGAATTTTGCTAGGACAAGTA----------TTGCCTATTTTAGGGAAGG-TAAATCAAGA-ACAGTTGTAGAACAGGATATCTTCTGAGCCATATATGGAGCATGCGGAG--TAAAAAAAGTCATGTTTGCTGTCTTCTCC-AATGATACAATGAGATGAGAAGCCTTCTCATTGCCCCTTTCATGTTCTTGTTCCTCAAAGTGTAGATAACAGGGTTAAGCATAGGAGTCACCAAGCTGTAGAACAGGGGCAGGAGCTTGCTCTTTCCCTGGGAGTTAGTAGCAGAGGGCTGCACATACATAATAATTCCTGGTCCGTAGAAGAGAGACACGACAGTAATGTGAGACCCACAGGTGTTAAAGGCCTTCTTCTTTCCCTCTGAGGACCGAATCCTCAGTACAGTAGCTACAATGAACCCATAGGAGACAAGGATAAGTGACAAGGGCACTAGGGAGTAAACCGCTCCCATCATGGACAGAAAAGCTTCATTGAAGGAGGTGTCAGCACATGACATCTTGATCATCACTGGG-------ACCTCACACAGGAA---GTCATCCACCTTGTTGTTACCACAGAGTGGCAGCTGGACTGTGAGGGATGACTGAAGCAAGGAGTTGGCCAAACCACACAGCCATGCCATAGTGACCAGAAGCTTACAGAATTGTCGATGCATAATGGCCAGGTACCTCAATGGCTTGCAGATGGCAATATAACGATCCAAGGACATCACTGCTAAGAGGATGCATTCAGT-GGCCCCCAGAAGATGAAACACATAAAACTGGGTTACACAGCCCCCATAGCTGATAGACTTCTCTGGGCCCCAGAGGTTCAGCAGCAGCTGAGGGATGGTGGTGGTTGTAAAACACAGGTCC----------------------------------------------AGGAAGGAGAGGTTGGCAAGGAAGAAGTACATGGGGCTGTCAAGTTCAGGGTCTGCTTTGGATACCACAATAATGGAGATGTTGCCCAACAGTGTGAAGATGTAAGTAACAAGCACGATGATGAACAGAGGCTTTTCCACCCAGGGCTGGCCAGAGAAACCCAAGAGAAAGAAAATCTTTGGAGAGCTGACATTACCTGGATTCATGACCGCCCTTTGTTTTGTGGGTAGATTCAGACAAAGGTGAAGCCTTGTATTTCAGTATTTCATTTCTCTGGT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171603481 37208 - 171630274 T

a score=4055289.000000
s hg38.chr6_GL000254v2_alt    338406 709 +   4827813 ACTCCACTTATTCAGTTAAGTAAAATAAACTGAGTTATGAAGGGGTTTTCTCTGTGATGTAACTAAACTGATGTGATTTGACACTTGTAAGCATGAAAAATTTTATCTAAAGGCCA-AAAT-GTTACCTTTCTAGTGCCTCTAAAAGGAAGATCAACAAATCTCTGTATCTTACCCAAGAAATGCAATATAGCAAACTTTTACAGAATAATGATTAAGTAATGGGAA--AC--ATAATTAATCTTATATTAGAAAAATGAATCAGATGGAGAAATGAATAATTTTAAAGAATGCCCAAGAACTACCCATGCTAAC-TAACAC--GTGTTAATTTCTTTCATCCAAAATCTGTTGGCCCTGGTCATGTTCTGGTTCAATTTGTGAGTTGATGTA-GGTGAGTTCAGAACTCACTGAGCTCCACGTGGATCAGTCTGATTTGCATAGAAACA-----ACATAGTGCTATTCCTTACCTCTTCTTCCCAAATCCTGGAATGAC---AATCGCCAACATAAAACTTTTGTCATAAAAGGAAGCACACAGCTGAAAGGAAATGGTTCCTTGCAACACGTTCAGTACTT-ACAA------GACAAGAT-------AATTCATTGCACAGCCAAGTGATATAAGGTCATTA-AAGTATCAGCAGTTAT----ACAGTATGATGTATGTTAGTGCTTTTCACACTGTGAGTTGTAATCTATTAC--------GCAGTTATATACTATTTTATTGATTTATTT
s panTro5.chr6              29313143 709 + 175400573 AGTCCACTTATTCAGTTAAGTAAAATAAACTGAGTTATGAAGGGGTTTTCTCTGTGATGTAACTAAACTGATGTGATTTGAAACTTGTAAGCATGAAAAATTTTATCTAAAGGCCA-AAAT-GTTACCTTTCTAGTGCCTCTAAAAGGAAGATCAACAAATCTCTGTATCTTACCCAAGAAATGCAATATAGCAAACTTTTACAGAATAATGATTAAGTAATGGGAA--AC--ATAATTAATCTTATATTAGAAAAATGAATCAGATGGAGAAATGAATAATTTTAAAGAATGCCCAAGAACTACCCATGCTAAC-TAACAC--GTGTTAATTTCTTTCATCCAAAATCTGTTGGCCCTGGTCATGTTCTGGTTCAATTTGTGAGTTGATGTA-GGTGAGTTCAGAACTCACTGAGCTCCACGTGGATCAGTCTGATTTGCATAGAAACA-----ACATAGTGCTATTCCTTACCTCTTCTTCCCAAATCCTGGAATGAC---AATTGCCAACATAAAACTTTTGTCATAAAAGGAAGCACACAGCTGAAAGGAAATGGTTCCTTGCAACACGTTCAGTACTT-ACAA------GACAAGAT-------AATTCATTGCACAGTCAAGTGATATAAGGTCATTA-AAGTATCAGCAGTTAT----ACAGTATGATATATGTTAGTGCTTTTCACATTGTGAGTTGTAATCTATTAC--------GCAGTTATATACTATTTTATTGATTTATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29559132 709 + 173848474 AGTCCACTTATTCAGTTAAGTAAAATAAACTGAGTTATGAAGGGGTTTTCTCTGTGATGGAACTAAACTGATGTGATTTGACACTTGTAAGCATGAAAAATTTTATCTAAAGGCCA-AAAT-GTTACCTTTCTAGTGCCTCTAAAAGGAAGATCAATAAATCTCTGTATCTTACCCAAGAAATGCAATATAGCAAACTTTTACAGAATAATGATTAAGTAATGGGAA--AC--ATAATTAATCTTATATTAGAAAAATGAATCAGATGGAGAAATGAATAATTTTAAAGAATGCCCAAGAACTACCCATGCTAAC-TAACAC--GTGTTAATTTCTTTCATCCAAAATCTGTTGGCCCTGGTCATGTTCTGGTTCAATTTGTGAGTTGATGTA-GGTGAGTTCAGAACTCACTGAGCTCCACGTGGATCAGTCTGATTTGCATAGAAACA-----ACATAGTGCTATTCCTTACCTCTTCTTCCCAAATCCTGGAATGAC---AATTGCCAACATAAAACTTTTGTCATAAAAGGAAGCACACAGCTGAAAGGAAATGGTTCCTTGCAACACGTTCAGTACTT-ACAA------GACAAGAT-------AATTCATTGCACAGTCAAGTGATATAAGGTCATTA-AAGTATCAGCAGTTAT----ACAGTATGATATATGTTAGTGCTTTTCACATTGTGAGTTGTAATCTATTAC--------GTAGTTATATACTATTTTATTGATTTATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5356462 709 +   6154872 AGTCCACTTATTCAGTTAAGTAAAATAAACTGAGTTATGAAGGAGCTTTCTCTGTGATGTAACTAAACTGATGTGATTTGACACTTGTAAGCATGAAAAATTTTATCTAAAGGCCA-AAAT-GTTACCTTTCTAGTGCCTCTAAAAGGAATATCAACAAATCTCTGTATCTTACCCAAGAAATGCAATATAGCAAACTTTTACAGAATAATGATTAAGTAATGGGAA--AC--ATAATTAATCTTATATTAGAAAAATGAATCAGATGGAGAAATGAATAATTTTAAAGAATGCCCAAGAACTACCCATGCTAAC-TAACAC--GTGTTAATTTCTTTCATCCAAAATCTGTTGGCCCTGGTCATGTTCTGGTTCAATTTGTGAGTTGATGTA-GGTGAGTTCAGAACTCACTGAGCTCCACGTGGATTAGTCTGATTTGCATAGAAACA-----ACATAGTGCTATTCCTTTCCTCTTCTTCCCAAATCCTGGAATGAC---GATCGCCAACATAAAACTTTTGTCATAAAAGGAAGCACACAGCTGAAAGGAAATGGTTCCTTGCAACACGTTCAGTACTT-ACAA------GACAAGAT-------AATTCATTGCACAGCCAAGTGATATGAGGTCATTA-AAGTATCAGCAGTTAT----ACAGTATGATGTATGTTAGTGCTTTTCACACTGTGAGTTGTAATCTATTAT--------GCAGTTATATACTATTTTATTGATTTATTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29518989 709 + 172585720 AGTCCACTTATTCAGTTAAGCAAAATAAACTGAGTTATGAAGGGGTTTTCTCTGCGATGTAACTTCACTG--GTGATTTGACACTTGTAAGCATGAAAAATTATGTCTAAAGGCCA-AAAT-GTTACCTTTCTAGTGCCTCTAAAAGGAAGACCAACAAATCTCTATATCTCACCCAAGAAACGCAATATAGTATACTCTTACAGAATAATGATTAAGTAATGAGAA--AC--ATAATTAATCTTATATTAGAAAAATGAATCAAATGGAGAAATGAATAATTTTAAAGAATGCCCAAGAACTACCCATGCTAAC-TAACACATGTGTTCATTTCTTTCCTCCAAAATCTGCTGACCCTTGTCATATTCTGTTTCAATTTACGAGTTCATTTA-AGTGAGTTCAGAACTCATTGAGCTCTATGTGGATTAGTCTGATTTGCATAGAAACA-----ACATAATATTATTCCTTACCTCTTCTTCCCAAATCCTGGAATGAC---GATTGCCAACATAAAACTTTTGTCATAAAAGGAAGTACACAGCTGAAAGGAAATGGTTCCTTGTAACATGTTCAGTACTT-ACAA------AACAAGAC-------AATTCATTGCACAGCCAAGTGATACAAGGTCATCA-AAGTATCAGCAGTTAC----ACAGTATGATGTGTGTTAGTGCTTTTCACACTGTGAGTTGTAATCTATCGT--------ACAGTTATATGCTATtttattgatttattt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29180101 709 - 170955103 AGTCCACTTATTCAGTTAAGCAAAATAAACTGAGTTATGAAGGGGTTTTCTCTGCGATGTAACTTCACTG--GTGATTTGACACTTGTAAGCATGAAAAATTATGTCTAAAGGCCA-AAAT-GTTACCTTTCTAGTGCCTCTAAAAGGAAGACCAACAAATCTCTATATCTCACCCAAGAAACGCAATATAGTATACTCTTACAGAATAATGATTAAGTAATGAGAA--AC--ATAATTAATCTTATATTAGAAAAATGAATCAAATGGAGAAATGAATAATTTTAAAGAATGCCCAAGAACTACCCATGCTAAC-TAACACATGTGTTCATTTCTTTCCTCCAAAATCTGCTGACCCTTGTCATATTCTGTTTCAATTTACGAGTTCATTTA-AGTGAGTTCAGAACTCATTGAGCTCTATGTGGATTAGTCTGATTTGCATAGAAACA-----ACATAATATTATTCCTTACCTCTTCTTCCCAAATCCTGGAATGAC---GATTGCCAACATAAAACTTTTGTCATAAAAGGAAGTACACAGCTGAAAGGAAATGGTTCCTTGTAACATGTTCAGTACTT-ACAA------AACAAGAC-------AATTCATTGCACAGCCAAGTGATACAAGGTCATCA-AAGTATCAGCAGTTAC----ACAGTATGATGTGTGTTAGTGCTTTTCACACTGTGAGTTGTAATCTATCGT--------ACAGTTATATGCTATTTTATTGATTTATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2172633 709 -   2996164 AGTCCACTTATTCAGTTAAGCAAAATAAACTGAGTTATGAAGGAGTTTTCTCTGCGATGTAACTTCACTG--GTGATTTGACACTTGTAAGCATGAAAAATTATGTCTAAAGGCCA-AAAT-GTTACCTTTCTAGTGCCTCTAAAAGGAAGACCAACAAATCTCTATATCTCACCCAAGAAACGCAATATAGTATACTCTTACAGAATAATGATTAAGTAATGAGAA--AC--ATAATTAATCTTATATTAGAAAAATGAATCAAATGGAGAAATGAATAATTTTAAAGAATGCCCAAGAACTACCCATGCTAAC-TAACACATGTGTTCATTTCTTTCCTCCAAAATCTGCTGACCCTTGTCATATTCTGTTTCAATTTACGAGTTCATTTA-AGTGAGTTCAGAACTCATTGAGCTCTATGTGGATTAGTCTGATTTGCATAGAAACA-----ACATAATATTATTCCTTACCTCTTCTTCCCAAATCCTGGAATGAC---GATTGCCAACATAAAACTTTTGTCATAAAAGGAAGTACACAGCTGAAAGGAAATGGTTCCTTGTAACATGTTCAGTACTT-ACAA------AACAAGAC-------AATTCATTGCACAGCCAAGTGATACAAGGTCATCA-AAGTATCAGCAGTTAC----ACAGTATGATGTGTGTTAGTGCTTTTCACACTGTGAGTTGTAATCTATCGT--------ACAGTTATATGCTATtttattgatttattt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2053071 708 -   2157725 AGTCCACTTACTCAGTTAAGTAAAATAAACT-AGTTATGAAGGGGTTTTCTCTGCGATGTAACTTCACTG--GTGATTTGACACTTGTAAGCATGAAAAATTATGTCTAAAGGCCA-AAAT-GTTACCTTTCTAGTGCCTCTAAAAGGAAGACCAACAAATCTCTATATCTTACCCAAGAAATGCAATATAGTAAACTTTTACAGAATAATGATTAAGTAATGAGAA--AC--ATAATTAATCTTATATTAGAAAAATGAATCAAATGGAGAAATGAATAATTTTAAAGAATGCCTAAGATCTACCCATGCTAAC-TAACACATGTGTTCATTTATTTCATCCAAAATCTGCTGGCTCTTGTCATATTCTGGTTCAATTTATGAGTTCATTTA-GGTGAGTTCAGAACTCATTGAGCTCCATGTGGATTAGTCTGATTTGCATAGAAACA-----ACATAATACTATTCCTTACCTCTTCTTCCCAAATCCTGGAATGAC---GATTTCCAGCATAAAACTTTTGTCATAAAAGGAAGTACTTAGCTGAAAGGAAATGGTTCCTTGCAACATGTTCAGTACTT-ACAA------AACAAGAC-------AATTCATTGCACAGCCAAGTGATATAAGGTCATTA-AAGTATCAGCAGTTAT----ACAGTATGATGTGTGTTAGTGCTTTTCACACTGTGAGTTGTAATCTATCGT--------ACCGTTATATGCTATTTTATTGATTTATTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28483606 707 -  71996105 AGTCCACTTACTCAGTTAAGTAAAATAAACT-AGTTATGAAGGGGTTTTCTCTGCGATGTAACTTCACTG--GTGATTTGACACTTGTAAGCATGAAAAATTATGTCTAAAGGCCA-AAAT-GTTACCTTTCTAGTGCCTCTAAAAGGAAGATCAACAAATCTCTATATCTTACCCAAGAAATGCAATATAGCAAACTTTTACGGAATAATGATTAAGTAATGAGAA--AC--ATAATTAATCTTATATTAGAAAAATGAATCAAATGGAGAAATGAATAATTTTAAAGAATGCCTAAGAACTACCCATGCTAAC-TAACACATGTGTTCATTTCTTTCATCCAAAATCTGCTGGCCCTTGTCATATTCTGGTTCAATTTACGAGTTCATTTA-AGTGACTTCAGAACTCACTGAGCTCCATGTGGATCAGTCTGATTTGCATAGAAACA-----ACATAATACTATTCCTTACCTCTTCTTCCCAAATCCTGGAATGAC---GATTGCCAGCGTAAAACTTTTGTCAT-AAAGGAAGTACACAGCTGAAAGGAAATGGTTCCTTGCAACATGTTCAGTACTT-ACAA------AACAAGAC-------AATTCATTGCACAGCCAAGTGATACAGGGTCATTA-AAGTATCAGCAGTTAT----ACAGTATGATGTGTGTTAGTGCTTTTCACATCGTGAGTTGTAATCTATTGT--------ACAGTTATATGCTATTTTATTGATTTATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2190756 708 +   2316924 AGTCCACTTACTCAGTTAAGTAAAATAAACT-AGTTATGAAGGGGTTTTCTCTGCGATGTAACTTCACTG--GTGATTTGACACTTGTAAGCATGAAAAATTATGTCTAAAGGCCA-AAAT-GTTACCTTTCTAGTGCCTCTAAAAGGAAGACCAACAAATCTCTATATCTTACCCAAGAAATGCAATATAGCAAACTTTTACGGAATAATGATTAAGTAATGAGAA--AC--ATAATTAATCTTATATTAGAAAAATGAATCAAATGGAGAAATGAATAATTTTAAAGAATGCCTAAGAACTACCCATGCTAAC-TAACACATGTGTTCATTTATTTCATCCAAAATCTGCTGGCCCTTGTCATATTCTGGTTCAATTTATGAGTTCATTTA-GGTGAGTTCAGAACTCATTGAGCTCCATGTGGATCAGTCTGATTTGCATAGAAACA-----ACATAATACTATTCCTTACCTCTTCTTCCCAAATCCTGGAATGAC---GATTTCCAGCATAAAACTTTTGTCACAAAAGGAAGTACATAGCTGAAAGGAAATGGTTCCTTGCAACATGTTCAGTACTT-ACAA------AACAAGAC-------AATTCATTGCACAGCCAAGTGATATAAAGTCATTA-AAGAATCAGCAGTTAT----ACAGTATGATGTGTGTTAGTGCTTTTCACACTGTGAGTTGTAATCTATCAT--------ACAGTTATATGCTATTTTATTGATTTATTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2072003 709 -   3067355 AGTCCACTTATTCAGTTAAGTAAAATAAACTGAATTATGAAGGGGTTTTCTCTGCGATGTAACTTCACTG--GTGATTTGACACTTGTATGCATGAAAAATTATGTCTAAAGGCCA-AAAT-GTTACCTTTCTAGTGCCTCTAAAAGGAAGACCAACAAATCTCTATATCTCACCCATGAAACGCAATATAGTAAACTTTTACAGAATAATGATTAAGTAATGAGAA--AC--ATAATTAATCTTATATTAGAAAAATGAATCAAATGGAGAAATGAATAATTTTAAAGAATGCCCAAGAACTACCCATGCTAAC-TAACACATGTGTTCATTTCTTTCATCCAAAATCTGCTGGCCCTTGTCATATTCTGGTTCAATTTACGAGTTCATTTA-GGTGAGTTCAGAACTCATTGAGCTCCGTATAGATTAGTCTGATTTGCATAGAAACA-----GCATAATACTATTCCTTACCTCTTCTTCCCAAATCCTGGAATGAC---AATTGCCAACATAAAACTTTTGTCATAAAAGGAAGTACACAGCTGAAAGGAAATGGTTCCTTGCAACATGTTCAGTACTT-ACAA------AACAAGAC-------AATTCATTGCACAGCCAAGTGATACAAGGTCATTA-AAGAATCAGCAGTTAT----ACAGTATGATGTGTGTTAGTGCTTTTCACACTGTGAGTTGTAATCTATCGT--------ACAGTTATATGCTATTTTATTGATTTATTT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1760376 699 -   2232465 GATCAATCTATTCAGTT----AAAATTAAATCAGTTATAAAGAGATTTTTCTCTTGATGTAACTTCAGCA------------------AAGTATGAAAAATTGAGTCCAAATGCCA-AAA--GATATTTCTGTAGTGTCTCTAAAAGAAAGATTAACAAATTTATATGTTTTACCCAAGAAATGTAACCTGGAAAATTTTTATAGAATGATCATTAGGTAAAGGGAA--ACTTACAACTGATCTTATATGAGAGAAATAAATAAAATGGAGAAATGAATGATTTTAACGAGTGCTCGAGAGCCACTTCTGCTGACTTACCACATGTTTTCCTTCCTTTTATTCAAAACCTGCTGGCCTTGGCCATGTTCTGGTTAAATTTATGAACTGATTTA-GGTGAGTTCCGAACTCATTGAGCTCCACGTGGGTCATTCTAATTTGCATAGAAAAA----CATGTATCACTGTTCCTTAGATCTACTCCCCAAACAGTAGAATGACTTTTTTTTTTAACA-AAAACTTTTGTCATAAAAGGTAACATGCAACTGAAAGGAAATGATTCCTTGCAACAAGTTCAGTACTT-GCAA------AACAAGACAAACCTTAATTGGTTGCA--------------AAGGTCATTA-AAGCATCAGCACTTATAAACACAGTATGATGTATGTTGGAACTTTTCACACTGTGATTTGTAATGTATCATATGTTTTAACAGTTATATGCTATTTTATTGATTCATTT
i otoGar3.GL873742         C 0 I 16
s dasNov3.JH570037            337210 723 -    859332 TGTTAATTCATTCAGTTAAATAACGTCAAGTGTGTTAT-AAGGAATTTTCTCTGTGATGCAACTTCAGTGAATTGTTTTGAAATTTGCAAGCATGAAAAATTGAGACCAAAGGTCACAAATAATTACTTTTGTAGTTCCTATAAAAGAAAGACCAATGCATCTCTATAATTGAGCTAAGAGATGAGATATAGCAAATTTTGACAGAATAATCCTTAGGTAAAGGAAACTAC--ACAGTTAATCTTTTTTTAGGGAAAACAATCAAGTGCAGGAATGAATTATTTTAGCAGGTGTCCTGGAATCGCCTATGCTGAC-TTAC-CATGTG-------------TCCACAGCCTGCAGGTCCTGACCAGGCTCTGGTTGAATTTATGAGTAGATTCAGGGTAAGCCCAGAACTGATTGAGCTCCACATGGACCTGCCTGATTTGCATAGACACAGAACCATATATGACTATTCTCAAGGTCTACTCCCTCAACCCTAGAATGAT----TTTGCCAACATAAAAC-TTTGTCATAAAAAGAAACATGCAGATGAAAGGAAATGCCCCTTTGCAGCATGTT-AGTGCTTGACAATTGAGGAAAACAAT-------AATCGACTGCACCGCCTGATGATATTAGACCATCAGAGGCATGGGTACTTGTAAACACATTTTGGTCTACGTTAGAGCATTTCACACTGTGAGTTGTAATCTGTCCTACATTTCAATAGGTATATGTTATTTTATTGATTTATTT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171603481 37208 - 171630274 T
e nomLeu3.chr1a             74370031   0 + 122973662 C

a score=104769.000000
s hg38.chr6_GL000254v2_alt    339115 22 +   4827813 TACTTATTCTCATCACTCATTT
s panTro5.chr6              29313852 22 + 175400573 TACTTATTCTCATCACTCATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29559841 22 + 173848474 TACTTATTCTCATCACTCATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5357171 22 +   6154872 TACTTATTCTCATCACTCATTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29519698 22 + 172585720 tacttattttcatcattctttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29180810 22 - 170955103 TACTTATTTTCATCATTCTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2173342 22 -   2996164 tacttattttcatcattctttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2053779 22 -   2157725 TACTTATTTTCATCACTCTTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28484313 22 -  71996105 TACTTATTTTCATCACTCTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2191464 22 +   2316924 TACTTATTTTCATCACTCTTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2072712 22 -   3067355 TACTTATTTTCATCACTCTTTt
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            337933 22 -    859332 TAtttgtttcgattacaagtgt
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1761075 16 -   2232465 I
e calJac3.chr4             171603481 37208 - 171630274 T
e nomLeu3.chr1a             74370031  0 + 122973662 C

a score=1408647.000000
s hg38.chr6_GL000254v2_alt    339137 247 +   4827813 -TAtatatgtgtttgtatgacctggattctgatgtacaatatattccttactataggtaatggtaaaaaatttggacaatactgGCATAG-------TAGAAAAGAAACAAGA-ATGATATTAGAAAATCTAGATTTAGTCCACTTCCCAATTACTAATACATGTACAT---TTTAGGTCTTGCTTAAATATTCAGAAACTTCTTTATCTATCTTGCTCCGTT--GTGGAGATTA----ATTAGCACCATATGTGTGAACACGCT
s panTro5.chr6              29313874 247 + 175400573 -TATATATGTGTTTGTATGACCTGGATTCTGATGTACAATATATTCCTTACTATAGGTAATGGTAAAAAATTTGAACAATACTGGCATAG-------TAGAAAAGAAACAAGA-ATGATATTAGAAAATCTAGATTTAGTCCACTTCCCAATTACTAATACATGTACAT---TTTAGGTCTTGCTTAAATATTCAGAAACTTCTTTATCTATCTTGCTCTGTT--GTGGAGATTA----ATTAGCACCATATGTGTGAACACGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29559863 247 + 173848474 -TAtatatgtgtttgtatgacctggattctgatgtacaatatattccttactataggtaatggtaaaaaatttgaacaatactgGCATAG-------TAGAAAAGAAACAAGA-ATGATATTAGAAAATCTAGATTTAGTCCACTTCCCAATTACTAATACATGTACAT---TTTAGGTCTTGCTTAAATATTCAGAAACTTCTTTATCTATCTTGCTCTGTT--GTGGAGATTA----ATTAGCACCATATGTGTGAACACGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5357193 247 +   6154872 -CATATATGTGTTTGTATGACCTGGATTCTGATGTACAATATATTCCTTACTATAGGTAATGGTAAAAAATTTGAACAATACTGGCATAG-------TAGAAAAGAAACAAGA-ATGACATTAGAAAATCTAGATTTAGTCCACTTCCCAATTATTAATACATGTACAT---TTTAGGTCTTGCTTAAATATTCAGAAACTTCTTTATCTATCTTGCTCCATT--GTGGAGATTA----ATTAGCACCATATGTGTGAACACGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29519720 248 + 172585720 -tatatatgtgtttGTATGACCTGGATTCTGATGTGCAATATATTCCTTACTACAGGTAATGGTAAAAAATTTGAACAATACTGGCATAG-------TAGAAAAGAAACAAGATATGACATTAGAAAATCTAGATTTAGTACACTTCCCAATTGTTAATACATGTACAT---TTTAGGTCTTGTTTAAATATTCAGAACCTCCCTTACCTGTCTTGCTCTGTT--GTGGAGATTA----GTTAGCACCATATGTGTGACCACGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29180832 248 - 170955103 -TAtatatgtgtttgtatgacctggattctgatgtgcaatatattccttactacaggtaatggtaaaaaatttgaacaatactgGCATAG-------TAGAAAAGAAACAAGATATGACATTAGAAAATCTAGATTTAGTACACTTCCCAATTGTTAATACATGTACAT---TTTAGGTCTTGTTTAAATATTCAGAGCCTCCCTTACCTGTCTTGCTCTGTT--GTGGAGATTA----GTTAGCACCATATGTGTGACCACGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2173364 248 -   2996164 -tatatatgtgtttGTATGACCTGGATTCTGATGTGCAATATATTCCTTACTACAGGTAATGGTAAAAAATTTGAGCAATACTGGCATAG-------TAGAAAAGAAACAAGATATGACATTAGAAAATCTAGATTTAGTACACTTCCCAATTGTTAATACATGTACAT---TTTAGGTCTTGTTTAAATATTCAGAACCTCCCTTACCTGTCTTGCTCTGTT--GTGGAGATTA----GTTAGCACCATATGTGTGACCACGCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2053801 248 -   2157725 -TATATGTGTGTTTGTATGACCTGGATTCTGATGTGCAATATATTCCTTACTACAGGTAATGGTAAAAAATTTGAACAATACTGGCATAG-------TAGAAAAGAAACAAGATATGACATTAGAAAATCTAGATTTAGTACACTTCCCAATTGTTAATACATGTACAT---TTTAGGTCTTGTTTAAATATTCAGAACCTCCCTTACCTGTCTGGCTCTGTT--GTGGAGATTA----GTTAGCACCATATGTGTGACCACGCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28484335 248 -  71996105 -TATATGTGTGTTTGTATGACCTGGATTCTGATGTACAATATATTCCTTACTACAGGTAATGGTAAAAAATTTGAACAATACTGGCATAG-------TAGAAAAGAAACAAGATATGACATTAGAAAATCTAGATTTAGTACACTTCTCAATTGTTAATACATGTACAT---TTTAGGTCTTGTTTAAATATTCAGAACCTCCCTTACCTGTCTTGCTCTGTT--GTGGAGATTA----GTTAGCACCATATGTGTGACCACGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2191486 248 +   2316924 -TAtatatgtgtttgtatgacctggattctgatgtgcaatatattccttactacaggtaatggtaaaaaatttgaacaatactgGCATAG-------TAGAAAAGAAACAAGATATGACATTAGAAAATCTAGATTTAGTACACTTCCCAATTGTTAATACATGTACAT---TTTAGGTCTTGTTTAAATATTCAGAACCTCCCTTACCTGTCTTGCTCTGTT--GTGGAGATTA----GTTAGCACCATATGTGTGACCACGCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2072734 248 -   3067355 -tatatgtgtgtttgtatgacctggattctgatgtacaatatattcctcactacaggtaatggtaaagaatttgaacaatactgGCATAG-------TAGAAAAGAAACAAGATATGACGTTAGAAAATCTAGATTTAGTATACTGCCCAATTGTTAATACATGTACAT---TTTAGGTCTTGTTTAAATATTCATAACCTCCCTTACCTGTCTTGCTCTGTT--GTGGAGATTA----GTTAGCACCATATGTGTGACCACGCT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1761091 246 -   2232465 -TATATGTGTGTTTATGTGATGTGAGTTGTGATGTCAAATATATTTCCTACTATAGGTAATAGTAAATCATTTGCAAAACACTGGTGTAGGTAAAGTTAAAAAGAAAACAGGGTATGAAACTAGAGTATCTGAAATTAGTCTA-TTGGCAATAGTTAATACATATACCT---CTTAGTCATTGCTTAAATAT------------Ttacctaccttgctgtgtt--gtgaggattaaatgaTTTGTTCAGTATGTATGACCACACT
i otoGar3.GL873742         I 16 I 9740
s dasNov3.JH570037            337955 244 -    859332 cagtatgtgtgcttgtatga-----gtcatgatgtaaaatatatttcttactatgagtaattgcaaaatgtttgaaaagcactgGTATTT-----------AGGGAAAAAAAACATGGAATCAGAAAATCTGGATCTGGTCCACTGC-CAACAGTTTATATGTATAAATAAATATTTGCATTGCTTAAATATTTGGAATCTCCCTTACCTCCCTTGCTATGTTCAGTGAGGCTTA----ATTAGTCCAACATATGTGACCACACT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171603481 37208 - 171630274 T
e nomLeu3.chr1a             74370031   0 + 122973662 C

a score=109751.000000
s hg38.chr6_GL000254v2_alt    339384 23 +   4827813 TTATTAAGTCCAATACTCAATGT
s panTro5.chr6              29314121 23 + 175400573 TTATTAAGTCCAATACTCAATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29560110 23 + 173848474 TTATTAAGTCCAATACTCAATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5357440 23 +   6154872 TTATTAAGTCCAATACTCAATGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29519968 23 + 172585720 TTATAAAGTCCCATACTCAAGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29181080 23 - 170955103 TTATAAAGTCCCATACTCAAGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2173612 23 -   2996164 TTATAAAGTCCCATACTCAAGGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2054049 23 -   2157725 TTATAAAGTCCCATACTCAAGGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28484583 23 -  71996105 TTATGAAGTCCAGTACTCAAAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2191734 23 +   2316924 TTATAAGGTCCCATATTCAAGGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2072982 23 -   3067355 TTATGAAGTCCAATACTCAAAGT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1771077 23 -   2232465 TTATTAAGTAAAGTACTTACTGT
i otoGar3.GL873742         I 9740 C 0
s dasNov3.JH570037            338199 21 -    859332 --TTTTAGTGCAATACCTAATAT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171603481 37208 - 171630274 T
e nomLeu3.chr1a             74370031  0 + 122973662 C

a score=2928346.000000
s hg38.chr6_GL000254v2_alt    339407 488 +   4827813 TGGGTTGGTTATTTTTCATGAAATAAAGTTCCCTGTTTGATTTTAAGTCTATATCTGATAGTTAATTTTT-----CTTTGTATCCAAATATTAACCATGTCCTTATATTCCCATAAGAAGTCTTAGAAGGGTTGTTTTTTCTACCATTTTATTTCCCTACATTACTCAGATCCCTTGCCTTGAATCTGATGTTAATGATTTCTAGATTTTAATATCAGTACACATATGTTTTTAATCAGTGGAAATGCTCAC-----------------------AAATGCAAACAGTAC-CATAGATTA-TTTTTCAAAAACATGTTTCAATGTTTTAAATTATAATGAT-TAGTATTAGTATTAATAGGTGTCAATTTATTTATACTTTTT-TTAactgctccttgcctagcagggctatcctataggcagtgtgcccacagtagcCTTTTTTAAAATAGTTTTTTTAGTATGCAAATTTTCATAAGGAGATCACAACATGCATGTGGTTGTAT-AAAAAGATTAAATC
s panTro5.chr6              29314144 488 + 175400573 TGGGTTGGTTATTTTTCATGAAATAAAGTTCCCTGTTTGATTTTAAGTGTATATCTGATAGTTAATTTTT-----CTTTGTATCCAAATATTAACCATGTCCTTATATTCCCATAAGAAGTCTCAGAAGGGTTGTTTTTTCTACCATTTTATTTCCCTACATTACTCAGATCCCTTGTCTTGAATCTGATGTTAATGATTTCTAGATTTTAATATCAGTACACATATGTTTTTAATCAGTGGAAATGCTCAC-----------------------AAATGCAAACAGTAC-CATAGATTA-TTTTTCAAAAACATGTTTCAATGTTTTAAATTATAATGAT-TAGTATTAGTATTAATAGGTGTCAATTTATTTATACTTTTT-TTAactgctccttgcctagcagggctatcctataggcagtgtgcccacagtagcCTTTTTTAAAATAGTTTTTTTAGTATGAAAATTTTCATAAGGAGATCACAACATGCATGTGGTTGTAT-AAAAAGATTAAATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29560133 488 + 173848474 TGGGTTGGTTATTTTTCATGAAATAAAGTTCCCTGTTTGATTTTAAGTGTATATCTGATAGTTAATTTTT-----CTTTGTATCCAAATATTAACCATGTCCTTATATTCCCATAAGAAGTCTCAGAAGGGTTGTTTTTTCTACCATTTTATTTCCCTACATTACTCAGATCCCTTGTCTTGAATCTGATGTTAATGATTTCTAGATTTTAATATCAGTACACATATGTTTTTAATCAGTGGAAATGCTCAC-----------------------AAATGCAAACAGTAC-CATAGATTA-TTTTTCAAAAACATGTTTCAATGTTTTAAATTATAATGAT-TAGTATTAGTATTAATAGGTGTCAATTTATTTATACTTTTT-TTAactgctccttgcctagcagggctatcctataggcagtgtgcccacagtagcCTTTTTTAAAATAGTTTTTTTAGTATGCAAATTTTCATAAGGAGATCACAACATGCATGTGGTTGTAT-AAAAAGATTAAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5357463 487 +   6154872 TGGGTTGGTTA-TTTTCATGAAATAAAGTTCCCTGTTTGATTTTAAGTCTATATCTGATAGTTAATTTTT-----CTTTGTATCCAAATATTAACCATGTCCTTATATTCCCATAAGAAGTCTCAGAAGGGTTGTTTTTTCTACCATTTTATTTCCCTACATTACTCAGATCCCTTGTCTTGAATCTGATGTTAATGATTTCTAGATTTTAATATCAGTACACATATGTTTTTAATCAGTGGAAATGCTCAC-----------------------AAATGCAAACAGTAC-CATAGATTA-TTTTTCAAAAACATGTTTCAATGTTTTAAATTATAATGAT-TAGTATTAGTATTAATAGGTGTCAATTTATTTATACTTTTT-TTAactgctccttgcctagcagggctatcctataggcagtgtgctcacagtagcCTTTTTTAAAATAGTTTTTTTAGTATGCAGATTTTCATAAGGAGATCACAACATGCATGTGGTTGTAT-AAAAAGATTAAATC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29519991 489 + 172585720 TGGGTTTGTTA-TTTTCATGAAATACAGCACTCTGTTTGATTTTAAGTCTATATCTTCTAGTTAATTTTTCTTCACTTTGTATCCAAATATTAACCATGTCCTTATATTCCCAT---AAGTCTCAGAAGGGTTATTTTTTCTACCATTTTATTTCCCTATATTACTCAGATCACTTGTCTTGAATCTGATGATAATGATTTCTAGATGTTAATACCAGTACACATATGTTTTTAATCAGTGGAAATGCCCAC-----------------------AAATGCAAACAGTAC-CATAGATTA-TTTTTCAAACACATGTTTCAATATTTTAAATTATAATGAT-TAGTATTAGTATTAATAGGTGTCAATTTATTTATACTTTTT-TAAactgctccttgcagagcaaggctaccctataggcagtgtgcccagagtagcCTTTTTTAAAATAGTTTTTTTAGTGTGCAAGTTTTCGTAAGGAGATCACAACATACATGTAGTTGTAT-AAAAAGATGAAATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29181103 489 - 170955103 TGGGTTTGTTA-TTTTCATGAAATACAGCACTCTGTTTGATTTTAAGTCTATATCTTCTAGTTAATTTTTCTTCACTTTGTATCCAAATATTAACCATGTCCTTATATTCCCAT---AAGTCTCAGAAGGGTTATTTTTTCTACCATTTTATTTCCCTACATTACTCAGATCACTTGTCTTGAATCTGATGATAATGATTTCTAGATGTTAATACCAGTACACATATGTTTTTAATCAGTGGAAATGCCCAC-----------------------AAATGCAAACAGTAC-CATAGATTA-TTTTTCAAACACATGTTTCAATATTTTAAATTATAATGAT-TAGTATTAGTATTAATAGGTGTCAATTTATTTATACTTTTT-TAAactgctccttgcagagcaaggctaccctataggcagtgtgcccagagtagcCTTTTTTAAAATAGTTTTTTTAGTGTGCAAGTTTTCGTAAGGAGATCACAACATACATGTAGTTGTAT-AAAAAGATGAAATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2173635 489 -   2996164 TGGGTTTGTTA-TTTTCATGAAATACAGCACTCTGTTTGATTTTAAGTCTATATCTTCTAGTTAATTTTTCTTCACTTTGTATCCAAATATTAACCATGTCCTTATATTCCCAT---AAGTCTCAGAAGGGTTATTTTTTCTACCATTTTATTTCCCTATATTACTCAGATCACTTGTCTTGAATCTGATGATAATGATTTCTAGATGTTAATACCAGTACACATATGTTTTTAATCAGTGGAAATGCCCAC-----------------------AAATGCAAACAGTAC-CATAGATTA-TTTTTCAAACACATGTTTCAATATTTTAAATTATAATGAT-TAGTATTAGTATTAATAGGTGTCAATTTATTTATACTTTTT-TAAactgctccttgcagagcagggctaccctataggcagtgtgcccagagtagcCTTTTTTAAAACAGTTTTTTTAGTGTGCAAGTTTTCGTAAGGAGATCACAACATACATGTAGTTGTAT-AAAAAGATGAAATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2054072 489 -   2157725 TGGGTTTGTTA-TTTTCATGAAATACAGCACTCTGTTTGATTTTAAGTCTATATCTTCTAGTTTATTTTTCTTCACTTTGTATCCAAATATTAACCATGTCCTTATATTCCCAT---AAGTCTCAGAAGGGTTATTTTTTCTACCATTTTATTTCCCTACATTACTCAGATCACTTGTCTTGAATCTGATGATAATGATTTCTAGATGTTAATACCAGTACACATATGTTTTTAATCAGTGGAAATGCCCAC-----------------------AAATGAAAACAGTAC-CACAGATTA-TTTTTCAAACACATGTTTCAATATTTTAAATTATAATGAT-TAGTATTAGTATTAATAGGTGTCAATTTATTTATACTTTTT-TAAactgctccttgcagagcagggctaccctataggcagtgtgcccagagtagcCTTTTTTAAAATAGTTTTTTTAGTGTGCAAGTTTTCGTAAGGAGATCACAACATACATGTAGTTGTAT-AAAAAGATGAAATC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28484606 489 -  71996105 TGGGTTTGTTA-TTTTCATGAAATACAGCACTCTGTTTGATTTTAAGTCTATATCTTCTAGTTAATTTTTCTTCACTTTGTATCCAAATATTAACCATGT-CTTATATTCCCAT---AAGTCTCAGAAGGGTTACTTTTTCTACCATTTTATTTCCCTACATTACTCAGATCACTTGTCTTGAATCTGATGATAATGATTTCTAGATGTTAATACCAGTACACATATGTTTTTAATCAGTGGAAATGCCCGC-----------------------AAATGCAAACAGTAC-CATAGATTA-TTTTTCAAACACATGTTTCAATATTTTAAATTATAATGAT-TAGTATTAGTATTAATAGGTGTCAATTTATTTATACTTTTTAAAAattgctccttgcagagcagggctaccctacaggcagtgtgcccagagtagcCTTTATAAAAATAGTTATTTTAGTATGCAAGTTTTCATAAGGAGATCACAACATACATGTAGTTGTAT-AAAAAGATTAAATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2191757 489 +   2316924 TGGGTTTGTTA-TTTTCATGAAATACAGCACTCTGTTTGATTTTAAGTCTATATCTTCTAGTTAATTTTTCTTCACTTTGTATCCAAATATTAACCATGTCCTTATATTCCCAT---AAGTCTCAGAAGGGTTATTTTTTCTACCATTTTATTTCCCTACATTACTCAGATCACTTGTCTTGAATCTGATGATAATGATTTCTAGATGTTAATACCAGTACACATATGTTTTTAATCAGTGGAAATGCCCAC-----------------------AAATGAAAACAGTAC-CACAGATTA-TTTTTCAAACACATGTTTCAATATTTTAAATTATAATGAT-TAGTATTAGTATTAATAGGTGTCAATTTATTTATACTTTTT-TAAactgctccttgcagagcagggctaccctataggcagtgtgcccagagtagcCTTTTTTAAAATAGTTTTTTTAGTGTGCAAGTTTTCGTAAGGAGATCACAACATACATGTAGTTGTAT-AAAAAGATGAAATC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2073005 488 -   3067355 TGGGTTTGTTA-TTTTCATGAAATACAGCACCCTGTTTGATTTTAAGTCTATATCTTCTAGTTAATTTTTCTTTACTTTGTATCCAAATATTAACCATGTCCTTATATTCCCAT---AAGTCTCAGAAGGTTTACTTTTTCTACCATTTTATTTCCTTACATTACTCAGATCACTTGTCTTGAATCTGATGATAATGATTTCTAGATGTTAATACCAGTACACGTATGTTTTTAATCAGTGGAAATGCCCAC-----------------------AAATGCAAAGAGTAC-TATAGATTA-TTTTTCAAACAC--GTTTCAATATTTTAAATTATAATGAT-TAGTATTAGTATTAATAGGTGTCAATTTATTTATACTTTTTTTTAactgctccttgcagagcagggctaccctataggcagtgtgcccagagtagcCTTTTTTAAAATAGTTTTTTTAGTATGCAAGTTTTCATAAGGAGATCACAACATACATGTAGTTGTAT-AAAAAGATTAAATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171566273 412 - 171630274 tGAGTTGGTTA-TTTTCATGAAATACAGTGCCCTGTTTGATTTTAAGTCTATATCTGCTAGTTAATTTTTCTTTACTTTGTATCTAAATATTAACCATGCCCTTATATTCCTGTAAGAAGTGTCAGAAGGATT-TTTTTTTTACCATTTTATTTCCCTGTATTACTCAGATCACTTTTCTTGAATCTGATGTTAATGTTTTCTAGATTTTGATACCAGTACACACATATTTTTAATCAGTGGAAATGCCCAC-----------------------AGATGCAAAGAGTAA-CATAGATTA-TTTTTTAAAAACATGTTTCAATGTTTCAAATTATAATGGT-TAATGTTAGT--------------------------------------------------------------------------------AGTAGCCTTTTTAAAAATAGTTTTTTTAGTATGCAAGTTTTCATAAGGAGACCACAGCATTTATGTAGTTGTAT-AAAAACATTAAATC
i calJac3.chr4             T 37208 C 0
s otoGar3.GL873742           1771100 434 -   2232465 TGTGTTGGTTA-TTTTCATGAAATAAAGTACCTTGTTTGATTATGAATCTATATCTGCTAATTAATTTTTCTTCAGGTTGTATCTAAATATTAA--GTGTCCTTACTCCCCTATAAGAAGTCTCAGAAGGATTGAAATTTCTTCCCTTTCTGTTACTTAAACTACTCAGATCCCTTGAGTTGAATCTGATGCAAATAATTTCAAGATTTTTATGCTGGTATACatata-ttttaattaatataaatGCATATTACCCTTCCATTTGCATTAATGAAAATGCAAATAGTAT-TCTAGATTA-TTTTTGAAGAGTAT------ACattttaaattataattat-gtttattgatattaaaagaaatgaatttatatGCACATTTG------------------------------------------------------------------------TTTTAGTGTGCAG--CTTCACACAGTGGTCACAACTTGCATGGAGTTGTTCAAAAAAGATTATATC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            338220 384 -    859332 --------TTA-TTTTCATG----------CTTTTTTTGATTGTGTGTTTGTATCT----GTTAATTTTTCTGTGGGTTGTATACAAATATTAACAGTGTCCATAACTTTTCATAGGAACTCTCATAAGGGTTGCATTTTCTTCCTTTTTGTTTCCTTAAATTACTCGGATCACATGGCTTTAATATGATGTTAATGATTTCAAGATTTTTA-GTCAATATACACATGCTTTC-TTTAATGGAAATGCCCAC-----------------------TAATGCAAACTGTACTCACAGATCATTTTTTCAAAGACATGTTTTGATGTTTTAAATTATAATGATGTTGTATTAATATTGTAAGGTTTTGATTTATTAACCTTTTTT---------------------------------------------------------------------------TAGTATGCAATATTACCTAAATAGGTCACA-------------TATGC-AAAAAGTTTAAATC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74370031   0 + 122973662 C

a score=829573.000000
s hg38.chr6_GL000254v2_alt    339895 113 +   4827813 AATCAAGCTAAATAGATCATTTC-TACTCATA-TGCAACAGTTGCC-TAAATCAGTGTTGATATTTTTTAGGGGTA-CCCTCTTTTCTTGCAAAAAAG-AACATTAATCTTTTTCTTC
s panTro5.chr6              29314632 113 + 175400573 AATCAAGCTAAATAGATCATTTC-TACTCATA-TACAACAGTTGCC-TAAATCAGTGTTGATATTTTTTAGGGGTA-CCCTCTTTTCTTGCAAAAAAG-AACATTAATCTTTTTCTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29560621 113 + 173848474 AATCAAGCTAAATAGATCATTTC-TACTCATA-TACAACAGTTGCC-TAAATCAGTGTTGATATTTTTTAGGGGTA-CCCTCTTTTCGTGCAAAAAAG-AACATTAATCTTTTTCTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5357950 113 +   6154872 AATCAAGCTAAATAGATCATTTC-TACTCATA-TACAACAGTTACC-TAAATCAGTGTTAATATTTTTTAATGGTA-CCCTCTTTTCTTGCAAAAAAG-AACATTAATCTTTTTCTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74370031 114 + 122973662 AGTCAAGCTAAATAGATCATTTC-TACTCATA-TACAACAGTTACC-TAAATCAGTGTTGATATTTTTTAGTGGTA-CTCTCTTTTCTTGCAAAAAAGAAACATTAATCTTTTTCTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29520480 112 + 172585720 AATCAAGTTAAATAGATTATTTC-TACTCATA-GACAGCAGTTACC-TAAATCAATGTTGATATTTTCTAGTGGTA-CCCTCTTTTCTTAC-AAAATG-AACATTAATCTTTTTCTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29181592 112 - 170955103 AATCAAGTTAAATAGATTATTTC-TACTCATA-GACAGCAGTTACC-TAAATCAATGTTGATATTTTCTAGTGGTA-CCCTCTTTTCTTAC-AAAATG-AACATTAATCTTTTTCTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2174124 112 -   2996164 AATCAAGTTAAATAGATTATTTC-TACTCATA-GACAGCAGTTACC-TAAATCAATGTTGATATTTTCTAGTGGTA-CCCTCTTTTCTTAC-AAAATG-AACATTAATCTTTTTCTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2054561 113 -   2157725 AATCAAGTTAAATAGATCATTTC-TACTCATA-TACAGCAGTTACC-TAAATCAATGTTGATATTTTCTAGTGGTA-CCCTCTTTTCTTACAAAAAAG-AACATTAATCTTTTTCTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28485095 112 -  71996105 AATCAAGTTAAATAGATTATTTC-TACTCATA-GACAGCAGTTACC-TAAATCAATGTTGATATTTTCTAGTGGTA-CCCTCTTTTCTTAC-AAAATG-AACATTAATCTTTTTCTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2192246 113 +   2316924 AATCAAGTTAAATAGATCATTTC-TACTCATA-TACAGCAGTTACC-TAAATCAATGTTGATATTTTCTAGTGGTA-CCCTCTTTTCTTACAAAAAAG-AACATTAATCTTTTTCTTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2073493 112 -   3067355 AATCAAGTTAAATAGATTATTTC-TTCTCATA-GACAGCAGTTACC-TAAATCAATGTTGATATTTTCTAGTGGTA-CCCTCTTTTCTTAC-AAAATG-AACATTAATCTTTTTCTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171566685 113 - 171630274 AATCAAGCTAAATAGATCCTTTC-TACTCATA-TACAACAGTTACC-TAAATCAATGTTAATATTTTCTGGTGGTA-CCCTCTTTTTTTGCAAAAAAG-AACATTAATCTTTTTCTTA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1771534 114 -   2232465 AATCAAGCTAAAGAGATCATTCC-CATCCACA-CTCAATACCTACCTTAAATCATTGTTGTTATTCTCTAGTGATG-CTCTCTTTTCTTGTCAAAAAG-GACATTACTCTTTTTTTCc
i otoGar3.GL873742         C 0 I 9480
s dasNov3.JH570037            338604 115 -    859332 AATCAATCAAAACAGATTAACTCACACTCTCACCATAACACCCACC-TCAATTAGGGCTGCTATTCAGTAGTGGTGTCCCCCTTTTCTAGCAAAAAAA-GATACCGAACTTTTCTTC-
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I

a score=34762.000000
s hg38.chr6_GL000254v2_alt    340008 4 +   4827813 CATC
s panTro5.chr6              29314745 4 + 175400573 CATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29560734 4 + 173848474 CATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5358063 4 +   6154872 CATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74370145 4 + 122973662 CATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29520592 4 + 172585720 CATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29181704 4 - 170955103 CATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2174236 4 -   2996164 CATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2054674 4 -   2157725 CATC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28485207 4 -  71996105 CATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2192359 4 +   2316924 CATC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2073605 4 -   3067355 CATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171566798 4 - 171630274 CATC
i calJac3.chr4             C 0 C 0
s dasNov3.JH570037            338719 4 -    859332 CATC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1771648 9480 -   2232465 I

a score=67935.000000
s hg38.chr6_GL000254v2_alt    340012 8 +   4827813 AGAATTCA
s panTro5.chr6              29314749 8 + 175400573 AGAATTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29560738 8 + 173848474 AGAATTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5358067 8 +   6154872 AGAATTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74370149 8 + 122973662 AGAATTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29520596 8 + 172585720 AAAATTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29181708 8 - 170955103 AAAATTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2174240 8 -   2996164 AAAATTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2054678 8 -   2157725 AAAATTCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28485211 8 -  71996105 AAAATTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2192363 8 +   2316924 AAAATTCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2073609 8 -   3067355 AAAATTCA
i colAng1.NW_012115566v1   C 0 N 0
s calJac3.chr4             171566802 8 - 171630274 AGAATTCA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1781128 8 -   2232465 AGAAGTCA
i otoGar3.GL873742         I 9480 C 0
s dasNov3.JH570037            338723 8 -    859332 AGAATTCA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I

a score=681472.000000
s hg38.chr6_GL000254v2_alt    340020 109 +   4827813 GTGTTAATTGGGGATAAAGATTGAATGTTCTTTCTGTATTCAGTGGTTTTATGTCATATCAGAGGTCTTTAATAG----TTATTTATTTGATTGAAAGGATCCCAAATCTTtt
s panTro5.chr6              29314757 109 + 175400573 GTGTTAATTGGGGATAAAGATTGAATGTTCTTTCTGTATTCAGTGGCTTTATGTCATATCAGAGGTCTTTAATAG----TTATTTATTTGATTGAAAGGATCCCAAATCTTtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29560746 109 + 173848474 GTGTTAATTGGGGATAAAGATTGAATGTTCTTTCTGTATTCAGTGGCTTTATGTCATATCAGAGGTCTTTAATAG----TTATTTATTTGATTGAAAGGATCCCAAATCTTtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5358075 109 +   6154872 GTGTTAATTGGGGATAAAGATTGAATGTTCTTTCTGTATTCAGTGGCTTTATGTCATATCAGAGGTCTTTAATAG----TTATTTATTTGATTGAAAGGATCCCAAATCTTtt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74370157 113 + 122973662 GTGTTAATTGGGGATAAAGATTGAATGTTCTTTCTATATTCAGTGGCTTTATGTCATATCAGAGGTCTTTAAtagttatttatttatttgattgaaaggatcccaaatctttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29520604 111 + 172585720 ACGTTAATTGGGGATAAAGATCGAATGTTCTTTCTGTATTCAGTGGCCTTATGTCATATCATAGGTCTTTAATAGTTATTTATCTATTTGATTGAAAGGATCCCAAATCGT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29181716 111 - 170955103 ACGTTAATTGGGGATAAAGATCGAATGTTCTTTCTGTATTCAGTGGCCTTATGTCATATCATAGGTCTTTAATAGTTATTTATCTATTTGATTGAAAGGATCCCAAATCGT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2174248 111 -   2996164 ACGTTAATTGGGGATAAAGATCGAATGTTCTTTCTGTATTCAGTGGCCTTATGTCATATCATAGGTCTTTAATAGTTATTTATCTATTTGATTGAAAGGATCCCAAATCGT--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2054686 111 -   2157725 ATGTTAGTTGGGGATAAAGATTGAATGTTCTTTCTGTATTCAGTGGCCTTATGTCATATCATAGATCTTTAAtagttatttatttatttgattgaaaggatcccaaatctt--
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28485219 111 -  71996105 ATGTTAATTGGGGATAAATATCGAATGTTCTTCATGTATTCAGTGGCCTTATGTCATATCATAGGTCTTTAAtagttatttatttatttgattgaaaggatcccaaatatt--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2192371 111 +   2316924 ATGTTAGTTGGGGATAAAGATTGAATGTTCTTTCTGTATTCAGTGGCCTTATGTCATATCATAGATCTTTAAtagttatttatttatttgattgaaaggatcccaaatctt--
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171566810 107 - 171630274 ATGCTAATTGGAGATAAAGATTGAATGTTCTTTCTGTATTCAGTAGCCTTATGTCTTATCATAGATCtttaatat----ttatttatttaattGGAAGGATCCAAAATATT--
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1781136 108 -   2232465 GTGTTAATTG-----AAGGACTGAATATTCTTTCTATATTCAGTGGCTTTATGTCAGCTCATGGGTCTTTTGTAGTTGCATGTTTATTTGATTTGAAAGAGTCCAAATGTTTT
i otoGar3.GL873742         C 0 I 45
s dasNov3.JH570037            338731 102 -    859332 GTGTTCAGTGGAGGTAAGGATTGAATATGCTTT-TGTTTTCAGTGGCTTT-TGTCATGACATAGGTCCTCAATTC----TTATTTATTTG-----AAGAATTATACATATTTT
i dasNov3.JH570037         C 0 I 40
e canFam3.chr35             26123994 2185 +  26524999 I

a score=1072882.000000
s hg38.chr6_GL000254v2_alt    340129 205 +   4827813 gatttattg------------tttatttatttatttatGCtttaacttttaattaaaatgcttaggatacagattgactttcttttgtaaatgactgttttactttttctgaaataggacatacatgcactctgataaaacagaatgaaaCATCTTAATTCATGAGAATTCCTGTACAAGGCGCTGATCCTGTGTTTAGAGCTGAGCTCCTCACAGC
s panTro5.chr6              29314866 205 + 175400573 gatttattg------------tttatttatttatttatGCtttaacttttaattaaaatgcttaggatacagattgactttcttttgtaaatgactgttttactttttctgaaataggacatacatgcactctgataaaacagaatgaaaCATCTTAATTCATGAGAATTCCTGTACAAGGCGCTGATCCTGTGTTTAGAGCTGAGCTCCTCACAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29560855 205 + 173848474 gatttattg------------tttatttatttatttatGCtttaacttttaattaaaatgcttaggatacagattgactttcttttgtaaatgactgttttactttttctgaaataggacatacatgcactctgataaaacagaatgaaaCATCTTAATTCATGAGAATTCCTGTACAAGGCGCTGATCCTGTGTTTAGAGCTGAGCTCCTCACAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5358184 201 +   6154872 gatttattg----------------tttatttatttatGCtttaacttttaattaaaatgcttaggatacagattgactttcttttgtaaatgactgttttactttttctgaaataggacgtacatgcactctgataaaacagaatgaaaCATCTTAATTCATGAGAATTCCTGTACAAGGCACTGATCCTGTGTTTAGAGCTGAGCTCCTCACAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74370270 201 + 122973662 gatttattg----------------tttatttatttatGCtttaacttttaattaaaatgcttaggatacagattgactttcttttgtaaatgactgttttactttttctgaaataggacatacatgcactctgatacaacagaatgaaaCATCTTAATTCATGAGAATGTCTGTACAAGGCGCTGATCCTGTGTTTAGAGCTGAGCTCCTCACAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29520715 198 + 172585720 --TTTATTG----------------TTTATTTATTTATGCtttaactttttattaaaatgcttaggatacggattgattttcttttgtaaatgactgtttcactttttctgaaataggacatatatgcgctctaataaaacagaatgaaacatcttaattcatgagaatt-ctgtacaaggcgctgatcttgtgtttggagatgatctcctcacagc
i rheMac8.chr4             C 0 I 113
s macFas5.chr4              29181827 198 - 170955103 --TTTATTG----------------TTTATTTATTTATGCtttaactttttattaaaatgcttaggatacggattgattttcttttgtaaatgactgtttcgctttttctgaaataggacatatatgcgctctaataaaacagaatgaaaCATCTTAATTCATGAGAATT-CTGTACAAGGCGCTGATCTTGTGTTTGGAGATGATCTCCTCACAGC
i macFas5.chr4             C 0 I 113
s macNem1.NW_012011356v1     2174359 198 -   2996164 --TTTATTG----------------TTTATTTATTTATGCtttaactttttattaaaatgcttaggatacggattgattttcttttgtaaatgactgtttcactttttctgaaataggacatatatgcgctctaataaaacagaatgaaacatcttaattcatgagaatt-ctgtacaaggcgctgatcttgtgtttggagatgatctcctcacagc
i macNem1.NW_012011356v1   C 0 I 113
s cerAty1.NW_012001495v1     2054797 211 -   2157725 --tttattg----tttgtttatttatttatttatttatGCtttaactttttattaaaatgcttaggatacagattgattttcctttgtaaatgactgttttactttttctgaaataggacatatatgcgctctaataaaacagaatgaaacatcttaattcatgagaattcctgtacaaggcgctgatcctgtgtttggagatgagctcctcacagc
i cerAty1.NW_012001495v1   C 0 I 113
s chlSab2.chr17             28485330 203 -  71996105 --tttattg------------tttatttatttatttatGCtttaactttttattaaaatgcttaggatacagaaagattttcttttgtaaatgactgttttactttttctgaaataggacatatatacgctctaataaaacagaatgaaacatcttaattcatgagaattcctgtacaaggcgctgatcctgtgtttggagatgagctcctcacagc
i chlSab2.chr17            C 0 I 113
s manLeu1.NW_012104165v1     2192482 214 +   2316924 --tttattgtttgtttgtttatttatttatttatttatGCtttaactttttattaaaatgcttaggatacggattgattttcttttgtaaatgactgtttcactttttctgaaataggacatatatgcgctctaataaaacagaatgaaacatcttaatgcatgagaatt-ctgtacaaggcgctgatcttgtgtttggagatgatctcctcacagc
i manLeu1.NW_012104165v1   C 0 I 113
s calJac3.chr4             171566917 191 - 171630274 --TTTA-------------------TTTGTTTATTTATGCTTCAACTTtttattaaaatgcctaggatacagattgagtttcttttgtaaatgactgttttaccttttctgaaatagagcatatatgcactctgat-----agagtgaaaCTTCTTAATTCATGAGAATTCCTGTTCAAGGCACTGATTCTCTGTTTAGAGCTGAACTCCTCACAGA
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            338833  40 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1781244  45 -   2232465 I

a score=25212.000000
s hg38.chr6_GL000254v2_alt    340334 4 +   4827813 AGCT
s panTro5.chr6              29315071 4 + 175400573 AGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29561060 4 + 173848474 AGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5358385 4 +   6154872 AGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74370471 4 + 122973662 AGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29521026 4 + 172585720 agct
i rheMac8.chr4             I 113 C 0
s macFas5.chr4              29182138 4 - 170955103 AGCT
i macFas5.chr4             I 113 C 0
s macNem1.NW_012011356v1     2174670 4 -   2996164 agct
i macNem1.NW_012011356v1   I 113 C 0
s cerAty1.NW_012001495v1     2055121 4 -   2157725 agct
i cerAty1.NW_012001495v1   I 113 C 0
s chlSab2.chr17             28485646 4 -  71996105 agct
i chlSab2.chr17            I 113 C 0
s manLeu1.NW_012104165v1     2192809 4 +   2316924 agct
i manLeu1.NW_012104165v1   I 113 C 0
s calJac3.chr4             171567108 4 - 171630274 AGCT
i calJac3.chr4             C 0 I 113
e dasNov3.JH570037            338833 40 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1781244 45 -   2232465 I

a score=4053494.000000
s hg38.chr6_GL000254v2_alt    340338 771 +   4827813 GCCCTACGTAGAACCCACAGTTTTCTAGCTTGCAACAAAGTTACTAGGGACAAAT-AGGGAA---------------------AAAAAATC---CGAAACTAAAAGTAAGAAAACCAACATGGAAGCAATCATACTTCTCATGTCTCTGATAAGAGAAGTATGGGGAACCTTTAACCAAAGGAAAATT--TAAAAAAAATGCAAGTTAACTATCTAGTTCATTCACTGTTAGCTAGATTTGTTCAGTTAAGGCTTTAACCCCTTTCCAAACAATTTTATCTTAATCCAGCTATGCTTGCTAATAAATGAAATGCATGCACTTCCCAGAAAT--ATACTTCACTGAGCCTCTGCATTCAGTACCTGGCAGTGAAAAAGTATGTTTCCCGAACAAGTCAGTACTGA-----AGACTGAGAACTCCAACTAAATAACTATACTCTCT--CCCCAATAATATGTTATCCACATTTTCCCTACCCTCACATTAGAATAAAGATATCCTCCTAACTTTTCATCTCCTATCTCCTGTCTTTTCCTAGGAGATCTTATCTTTTGATCTTTTACTACAAGGGTAGAATTTAGGTTAAGATCATAAAAATCCAATTTCACATGTGACACTAAGAAAATGGAATGCTATAAAATCAATCCTCATCACCGTGGTAGGGATGCTGTTGCTTTTATCCTGAGTCTTTACTGCCAATAAGTGATGCTGCTTCCAAAGGAACAGCTCTACAGAAAGTTTTTGAGTTAGTGTTTCCCCCCAGCTTATTTCTACAATGGGGAAAGGCAATTTCATATTAAAAAAA
s panTro5.chr6              29315075 771 + 175400573 GCCCTACGTAGAACCCACAGTTTTCTAGCTTGCAACAAAGTTACTAGGGACAAAT-AGGGAA---------------------AAAAAATC---CAAAACTAAAAGTAAGAAAACCAACATGGAAGCAATCATACTTCTCATGTCTCTGGTAAGAGAAGTATGGGGAACCTTTAACCAAAGGAAAATT--TAAAAAAAATGCAAGTTAACTATCTAGTTCATTCACTGTTAGCTAGATTTGTTCAGTTAAGGCTTTAACCCCTTTCCAAACAGTTTTATCTTAATCCAGCTATGCTTGCTAATAAATGAAATGCATGCACTTCCCAGAAAT--ATACTTCACTGAGCCTCTGCATTCAGTACCTGGCAGTGAAAAAGTATGTTTCCCGAACAAGTCAGTACTGA-----AGACTGAGAACTCCAACTAAATAACTATACTCTCT--CCCCAATAATATGTTATCCACATTTTCCCTACCCTCACATTAGAATAAAGATAAACTCCTAACTTTTCATCTCCTATCTCCTGTCTTTTCCTAGGAGATCTTATCTTTTGATCTTTTACTACAAGGGTAGAATTTAGGTTAAGATCATAAAAATCCAATTTCACATGTGACACTAAGAAAATGGAATGCTATAAAATCAATCCTCATCACCATGGTAGGGATGCTGTTGCTTTTATCCTGAGTCTTTACTGCCAATAAGTGATGCTGCTTCCAAAGGAACAGCTCTACAGAAAGTTTTTGAGTTAGTGTTTCCCCCCAGCTTATTTCTACAATGGGGAAAGGCAATTTCATATTAAAAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29561064 771 + 173848474 GCCCTACGTAGAACCCACAGTTTTCTAGCTTGCAACAAAGTTACTAGGGACAAAT-AGGGAA---------------------AAAAAATC---CGAAACTAAAAGTAAGAAAACCAACATGGAAGCAATCATACTTCTCATGTCTCTGATAAGAGAAGTATGGGGAACCTTTAACCAAAGGAAAATT--TTAAAAAAATGCAAGTTAACTATCTAGTTCATTCACTGTTAGCTAGATTTGTTCAGTTAAGGCTTTAACCCCTTTCCAAACAGTTTTATCTTAATCCAGCTATGCTTGCTAATAAATGAAATGCATGCACTTCCCAGAAAT--ATACTTCACTGAGCCTCTGCATTCAGTACCTGGCAGTGAAAAAGTATGTTTCCCGAACAAGTCAGTACTGA-----AGACTGAGAACTCCAACTAAATAACTATACTCTCT--CCCCAATAATATGTTATCCACATTTTCCCTACCCTCACATTAGAATAAAGATAACCTCCTAACTTTTCATCTCCTATCTCCTGTCTTTTCCTAGGAGATCTTATCTTTTGATCTTTTACTACAAGGGTAGAATTTAGGTTAAGATCATAAAAATCCAATTTCACATGTGACACTAAGAAAATGGAATGCTATAAAATCAATCCTCATCACCGTGGTAGGGATGCTGTTGCTTTTATCCTGAGTCTTTACTGCCAATAAGTGATGCTGCTTCCAAAGGAACAGCTCTACAGAAAGTTTTTGAGTTAGTGTTTCCCCCCAGCTTATTTCTACAATGGGGAAAGGCAATTTCATATTTAAAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5358389 771 +   6154872 GCCCTACGTAGAACCCACAGTTTTCTAGCTTGCAACAAAGTTACTAGGGACAAAT-AGGGAA---------------------AAAAAATC---CGAAACTAAAAGTAAGAAAACCAACATGGAAGCAATCATACTTCTCATGTCTCTGATAAGAGAAGTATGGGGAACCTTTAACCAAAGGAAAATTAAAAAAAAAAATGCAAGTTAACTATCTAGTTCATTCACTGTTAGCTAAATTTGTTCAGTTAAGGCTTTAACCCCTTTCCAAACAATTTTATCTTAATCCAGCTATGCTTGCTAATAAATGAAATGCATGCACTTCCCAGAAAT--ATACTTCACTGAGCCTCTGCATTCAGCACCTGGCAGTGAAAAAGTATGTTTCCCGAACAAGTCAGTACTGA-----AGACTGAGAACTCCAACTAAATAACTATA--CTCT--CCCCAATAATATGTTATCCACATTTTCCCTACCCTCACATTAGAATAAAGATATCCTCCTAACTTTTCATCTCCTATCTCATGTCTTTTCCTAGGAGATCTTATCTTTTGATCTTTTACTACAAGGGTAGAATTTAGGTTAAGATCATAAAAACCCAATTTCACATGTGACACTAAGAAAACAGAATGCTATAAAATCAATCCTCCTCACCGTCGTAGGCATGCTGTTGCTTTTATCCTGAGTCTTTACTGCCAATAAGTGATGCTGCTTCCAAAGGAACAGCTCTACAGAAAGTTTTTGAGTTAGTGTTTCCCCCCAGCTTATTTCTACAACGGGGAGAGGCAATTTCATATTAAAAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74370475 772 + 122973662 GCCCTACGTAGAACGCACAGTTTTCTAGCTTGCAACAAAGTTACTAGGGACAAAT-AGCGAG---------------------AAAAAATC---CAAAACTAAAAGTAAGAAAACCAACATGGAAGCAATCATACTTCTCATGTCTCTGATAAGGGAAGTATGGGGAACCTTTAACCAAAGGAAAATAAAAAAAAAAAATGCAAGTTAACTACCTAGTTCATTCACTGTTAGCTAGATTTATTCAATTAAGGCTTTAACCCCTTTCCAAACAATTTTATCTTAATCCAGCTATGCTTGCTAATAAATGAAATGCATGCACTTCCCAGAAAT--ATACTTCACTGAGCCTCTGCATTCAGTACCTGGCAGTGAAAAAGTGTGTTTCCCCAACAAGTCAGTACTGA-----AGACTGAGAACTCCAACTAAATAACTATACTGTCT--CCCCAGTAATATGTTATCCACATTTTCCCTGCCCTTACATTAGAATAAAGATATCCTCCTAACTTTTCATCTCCTATCTCCTGTCTTTTCCTAGGAGATCTTATCTTTTGATCTTTTACTACAAGGGTAGAATTTAGGTTAAGATCATAAAAATCCAATTTCACATGTGACACTAAGAAAATGGAATGCTGTAAAATCAATCCTCATCACCGTGGTAGGGATGCTGTTGCTTTTATCCTGAGTCTTTACTGCCAATAAGTGATGCTGCTTCCAAAGGAACAGCTCTACAGAAAGTTTTTGAGTTACTGTTTCCCCCCAGCTTATTTCTAC-ATGGGGAAAGGCAATTTCATATTTAAAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29521030 768 + 172585720 gccctaCGTAGAACCCACAGTTTTCTAGCTTACAACAAAGTGACTAGGGACAAAT-GGGGGG----------------------AAAAATC---CAAAACTAAAAATAA---AACCAACATGGAAGCAATCATACTTCTCATGTCTCTGAATAGAGATGTATGGGGAACCTTTAACCAAAGGAAATTT--AAAAAAAAATGCAAGTTAACTATCTAGTTCATTCGCTGTTAGCTAAATTTATTCACTTAAGGCTTTAACCTCCTTCCAAACAATTTTGTCTTAATCCAGCTATGGTTGCTAATAAACGAAAAGAATGCACTTCCCAGAAAT--ATACTTTATTGAGCCTCTGCATTCAGTACCTGACAGTGAAAAAGTATGCTTTTCCAACAAGTCAGTACTGA-----AGACCGAGAACTCCAACTACGTAACTGTACCCTCTCACTCCAGTAATATGTTATCCACATTTTCCCCACCCTCACATTAGAATAAAGATATCTTCCCAACTTTTCATATCCTATCTCCTGTCTTTTCCTAGGAGATCCTATGTTTGGATCTTTTCCTACTGGGGTAGAATTTAGGGTAAGATAGTAAAAATCCAATTTCACATGTGGCACTAAGAAAATGGAATGCTATAAAATCAGTCCTCATCACCGTGGTAGGGATGCTGTTGCTTTTATACTGAGTCTTTACTGCCAATAAGGGATGCTGCCTCCAAAGGAACAGCTCTATAGAAAATTTTTGAGTTAAGTGTTTCCCCCAGCTTATTTCTGT-ATGGAGAAAGGCAATTTCATATATAAAAAA
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              29182142 768 - 170955103 GCCCTACGTAGAACCCACAGTTTTCTAGCTTACAACAAAGTGACTAGGGACAAAT-GGGGGG----------------------AAAAATC---CAAAACTAAAAATAA---AACCAACATGGAAGCAATCATACTTCTCATGTCTCTGAATAGAGATGTATGGGGAACCTTTAACCAAAGGAAATTT--AAAAAAAAATGCAAGTTAACTATCTAGTTCATTCGCTGTTAGCTAAATTTATTCACTTAAGGCTTTAACCTCCTTCCACACAATTTTGTCTTAATCCAGCTATGGTTGCTAATAAACGAAAAGAATGCACTTCCCAGAAAT--CTACTTTATTGAGCCTCTGCATTCGGTACCTGACAGTGAAAAAGTATGCTTTTCCAACAAGTCAGTACTGA-----AGACCGAGAACTCCAACTACGTAACTGTACCCTCTCACTCCAGTAATATGTTATCCACATTTTCCCCACCCTCACATTAGAATAAAGATATCTTCCCAACTTTTCATATCCTATCTCCTGTCTTTTCCTAGGAGATCCTATGTTTGGATCTTTTCCTACTGGGGTAGAATTTAGGGTAAGATAGTAAAAATCCAATTTCACATGTGGCACTAAGAAAATGGAATGCTATAAAATCAGTCCTCATCACCGTGGTAGGGATGCTGTTGCTTTTATACTGAGTCTTTACTGCCAATAAGGGATGCTGCCTCCAAAGGAACAGCTCTATAGAAAATTTTTGAGTTAAGTGTTTCCCCCAGCTTATTTCTGT-ATGGAGAAAGGCAATTTCATATATAAAAAA
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     2174674 768 -   2996164 gccctaCGTAGAACCCACAGTTTTCTAGCTTACAACAAAGTGACTAGGGACAAAT-GGGGGG----------------------AAAAATC---CAAAACTAAAAATAA---AACCAACATGGAAGCAATCATACTTCTCATGTCTCTGAATAGAGATGTATGGGGAACCTTTAACCAAAGGAAATTA--AAAAAAAAATGCAAGTTAACTATCTAGTTCATTCGCTGTTAGCTAAATTTATTCACTTAAGGCTTTAACCTCCTTCCACACAATTTTGTCTTAATCCAGCTATGGTTGCTAATAAACGAAAAGAATGCACTTCCCAGAAAT--ATACTTTATTGAGCCTCTGCATTCGGTACCTGACAGTGAAAAAGTATGCTTTTCCAACAAGTCAGTACTGA-----AGACCGAGAACTCCAACTACGTAACTATACCCTCTCACTCCAGTAATATGTTATCCACATTTTCCCCACCCTCACATTAGAATAAAGATATCTTCCCAACTTTTCATATCCTATCTCCTGTCTTTTCCTAGGAGATCCTATGTTTGGATCTTTTCCTACTGGGGTAGAATTTAGGGTAAGATAGTAAAAATCCAATTTCACATGTGGCACTAAGAAAATGGAATGCTATAAAATCAGTCCTCATCACCATGGTAGGGATGCTGTTGCTTTTATACTGAGTCTTTACTGCCAATAAGGGATGCTGCCTCCAAAGGAACAGCTCTATAGAAAATTTTTGAGTTAAGTGTTTCCCCCAGCTTATTTCTGT-ATGGAGAAAGGCAATTTCATATATAAAAAA
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012001495v1     2055125 773 -   2157725 gccctaCGTAGAACCCCCAGTTTTCCAGCTTACAACAAAGTGACTAGGGACAAATAGGGGGA----------------------AAAAATC---CAAAACTAAAAATAAGACAACCAACATGGAAGCAATCATACTTCTCATGTCTCTGAATAGAGATGTATGGGGAACCTTTAACCAAAGAAAATTT--TAAAAAACATGCAAGTTAACTATCTAGTTCATTTGCTGTTAGCTAAATTTGTTCACTTAAGGCTTTAACCTCCTTCCAAACAATTTTGTCTTAATCTAGCTATGCTTGCTAATAAATGAAAAGAATGCACTTCCCAGAAAT--ATACTTTATTGAGCCTCTGCATTCGGTACCTGACAGTGAAAAAGTATGCTTTTCCAACAAGTCAGTACTGA-----AGACCGAGAACTCCAACTACATAACTATACCCTCTCACCCCAGTAATATGTTATCCACATCGTCCCTAGCCTCACATTAGAATAAAGATAGCCTCCCAACTTTTCATCTCCTGTCTCCTGTCTTTTCCTAGGAGATCCTATCTTTTGATCTTTTACTACTAGGGTAGAATTTAGGTTAAGATAGTAAAAATCTAATTTCACATGTGGCACTAAGAAAATGGAATGCTATAAAATGAGTCCTCATCACCGTGGTAGGGATGCTGTTGCTTTTATACTGAGTCTTTACTGCTAGTAAGTGATGCTGCCTCCAAAGGAACAGCTCTATAGAAAGTTTTTGAGTTAAATGTTTCCCCCAGCTTATTTCTGTAATGGAGAAAGGCAATTTCATATATAAAAAA
i cerAty1.NW_012001495v1   C 0 I 1
s chlSab2.chr17             28485650 772 -  71996105 gccctaCGTAGAACCCACAGTTTTCTAGCTTGCAACAAAGTGACTAGGGACAAAT-AGGGGG----------------------AAAAATC---CAAAACTAAAAATAAGAAAACCAACATGGAAGCAATCGTACTTCTTATGTCTCTGAATAGTGATGTATGGGGAACCTTTAACCAAAGGAAATTA--AAAAAAAAATGCAAGTTAACTATCTAGTTCATTCGCTGTTAGCTAAATTTGTTCACTTAAGGCGTTAACCTCCTTCCAAACAATTTTGTCTTAATGTAGCTATGCTTGCTAATAAATGAAAAGAATACATTTCCCAGGAAT--ATACTTTATTGAGCCTCTGCATTCGGTACCTGACAGTGAAAAAGTATGCTTTTCCAACAAGTCAGTAATGA-----AGACCGAGAACTCCAACTACATAACTATACCCTCTCACCCCAGTAATATGTTATCCACATTTTCCCCACCCTCACATTAGAATAAAGATATCCTCCCAACTTTTCATCTCCTATCTCCTGTCTTTTCCTAGGAGATCCTATCTTTTGATCTTTTCCTACTAGGGTAGAATTTAGGTTAAGATAGTAAAAATCCAATTTCACATGTGGCACTAAGAAAATGGAATGCTGTAAAATCAGTCCTCATCACTGTGGTAGGGATGCTGTTGCTTTTATACCGAGTCTTTACTGCCAATAAGTGATGCTGCCTCCAAAGGAACAGCTCTATAGAAAGTTTTTGAGTTAAGTGTTTCCCCCAGCTTATTTCTGTAATGGAGAAAGGCAATTTCGTATATAAAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2192813 773 +   2316924 gccctaCGTAGAACCCACAGTTTTCTAGCTTACAACAAAGTGACTAGGGACAAAT-AGGGGG---------------------AAAAAATC---CAAAACTAAAAATAAGACAACCAACATGGAAGCAATCATACTTCTCATGTCTCTGAATAGAGATGTATGGGGAACCTTTAACCAAAGGAAATTT--TAAAAAACATGCAAGTTAACTATCTAGTTCATTTGCTGTTAGCTAAATTTGTTCACTTAAGGCTTTAACCTCCTTCCAAACAATTTTGTCTTAATCTAGCTATGCTTGCTAATAAATGAAAAGAATGCACTTCCCAGAAAT--ATACTTTATTGAGCCTCTGCATTCGGTACCTGACAGTGAAAAAGTATGCTTTTCCAATAAGTCAGTACTGA-----AGACCGAGAACTCCAACTACATAACTATACCCTCTCACCCCAGTAATATGTTATCCACATCGTCCCTAGCCTCACATTAGAATAAAGATAGCCTCCCAACTTTTCATCTCCTATCTCCTGTCTTTTCCTAGGAGATCCTATCTTTTGATCTTTTACTACTAGGGTAGAATTTAGGTTAAGATAGTAAAAATCTAATTTCACATGTGGCACTAAGAAAATGGAATGCTATAAAATGAGTCCTCATCACCGTGGTAGGGATGCTGTTGCTTTTATACTGAGTCTTTACTGCTAGTAAGTGATGCTGCCTCCAAAGGAACAGCTCTATAGAAAGTTTTTGAGTTAAGTGTTTCCCCCAGCTTATTTCTGTAATGGAGAAAGGCAATTTCATATTTAAAAAA
i manLeu1.NW_012104165v1   C 0 I 344
s calJac3.chr4             171567225 794 - 171630274 GCCCCATGTAGAACTCACAGTTTTCTAGCCTGCAGCAAAATGACTAGGGACAAAT-AGGGCAAaaataaataaataaataaataaaAAAGCCCACAAAACTAAAAATAAGAAAACTAACATAGAAGCAGTCATACTTCTCATGTCTCTGAACAGAGAA-TATGGGGAACCTTTAACGAAAGGAAATTT--TTAAAAA-ATGTAAGTTAACTATCTAGTTCATTCACTGTTAGCTAGATTTGTTCACTTAAGGC-TTAACCCCTTTCCAAACAATTTTGTCTTAATCCGGCTGTGCTTGCTAATAAATAAAATGCATGCATTTCCCAGAAATACATACTTCATTGAGCCTCTGCATTCTGTACCTGGCAGTGAAAAAG--TGCTTTCCCAACAAGTCAGTACTGAAATTCAGACTGAAAACTCCAACTAAAGAAGTATACTCTCTCACCCCAGTAATATGTCATTTACATTTTCTTCATCCTCACATTAGAATAAAGATATCCTTTCAATTTTTCATCTGGTATATCCTGTCTTTTCCTAGGAGATTCTATCTTTTGATCTTTTACTACAGGGGTGGAATTTAGGTTAAGATCATTAAAATCCAATTCCACATGTGGCACTGAGAACATGGCATGCTGTAAAATCAATCCTCATCATGGTGGTAAAGACGCTCTTGCTTTTATACA----CCTTACTGCCAATAAGTGATGCTGCCTCCAAAGGAACAGCTCTACAGAAAGTTTTTAAGTTAG-TGTTTTTCCCAGCTTATTTCTGCAATGGAGAAAGGCAATTTCATTTTTAAAAAC
i calJac3.chr4             I 113 C 0
e dasNov3.JH570037            338833  40 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1781244  45 -   2232465 I

a score=1627103.000000
s hg38.chr6_GL000254v2_alt    341109 342 +   4827813 TCCACACAAACACACCTGGAAAAGCTACAGA----TGTTAACCTTTACTTTAAACA-CAGCAACGTAGATATCTAAGGAGATAAGATGTAAGACAAAGAGCTCAGGAAAAATCCAATAGAGACCAAATTCTGCAAATGGAAATTTTAAAGCCCAGTGAGTAAATTTTTCCTGCATTCAGACAAGTGCTACAATACATTTAAGTCCTCAACTCCCAGAATTAAGAGCCCTTAAGCTGTTAACTTTGTCCTGTCTTCCTATTCAGAAAAATTTTCCTCTAGAATCTGTGCAAAAGTAACTGACACACCTGCAGTATGTGACAACATAAGAGATGTTCTCAACTTTTTCA
s panTro5.chr6              29315846 342 + 175400573 TCCACACAAACACACCTGGAAAAGCTACAGA----TGTTAACCTTTACTTTAAACA-CAGCAACGTAGATATCTAAGGAGATAAGATGTAAGACAAAGAGCTCAGGAAAAATCCAATAGAGACCAAATTCTGCAAATGGAAATTTTAAAGCCCAGTGAGTAAATTTTTCCTGCATTCAGACAAGTGCTACAATACATTTAAGTCCTCAACTCACAGAATTAAGAGCCCTTAAGCTGTTAACTTTGTCCTGTCTTCCTATTCAGAAAAATTTTCCTCTAGAATCTGTGCAAAAGTAACTGACACACCTGCAGTATGTGACAACATAAAAGATGTTCTCAACTTTTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29561835 342 + 173848474 TCCACACAAACACACCTGGAAAAGCTACAGA----TGTTAACCTTTACTTTAAACA-CAGCAACGTAGATATCTAAGGAGATAAGATGTAAGACAAAGAGCTCAGGAAAAATCCAATAGAGACCAAATTCTGCAAATGGAAATTTTAAAGCCCAGTGAGTAAATTTTTCCTGCATTCAGACAAGTGCTACAATACATTTAAGTCCTCAACTCACAGAATTAAGAGCCCTTAAGCTGTTAACTTTGTCCTGTCTTCCTATTCAGAAAAATTTTCCTCTAGAATCTGTGCAAAAGTAACTGACACACCTGCAGTATGTGACAACATAAGAGATGTTCTCAACTTTTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5359160 342 +   6154872 TCCACACAAACACACCTGGAAAAGCTACAGA----TGTTAACCTTTACTTTAAACA-CAGCAACGTAGATATCTAAGGAGATAAGATGTAAGACAAAGAGCTCAGGAAAAATCCAATAGAGACCAAATTCTGCAAATGGAAATTTTAAAGCCCAGTGAGTAAATGTTTCCTGCATTCAGACAAGTGCTACAATACATTTAAGTCCTCAACTCACAGAATTAAGAGCCCTTAAGCTGTTAACTTTGTCCTGTCTTCCTCTTCAGAAAAATTTTCCTCTAGAATCTGTGCAAAAGTAACTGACACACCTGCAGTATGTGACAACATAAGAGATGTTCTCAACTTTTTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74371247 342 + 122973662 TCCACACAAACACACCTGGAAAAGCTACAGA----TGTTAACCTTTACTTTAAACA-CAGCAATGTAGATATCTAAGGAGATAAGACATAAGACAAAGAGCTCAGGAAAAATCCAATAGAGACCAAATTCTGCAAATGGAAATTTTAAAGCCCAGTGAGTAAATTTTTCCTGCATTCAGACAACTGCTATAATACATTTAAGTCCTCAACTCACAGAATTAAGAGCCCTTAAGCTGTTAACTTTGTCCTGTCTTCCTATTCAGAAAAATTTTCCTCTAGAATCTGTGCAAAAGTAACTGACACACCTGCAGTATGTGACAACATAAGAGATGTTCTCAATTCTTTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29521799 342 + 172585720 TCCACACAAACACACCTGGAAAAGCTACAGA----TGTTAACCTTTACTTTAAACACCAGCAACATAGATATCTAAGGAGATAAGATGTGAGACAAAGAGCTCAGGAAAAATCCGATAGAGACCAAATTCTCCAAATGGAAATTTTAAAGCCCACTGAGTAAGTTTTTCCCGCATTCAAACAAGTGCTACAATACATTTAAGTCCTCAACTCACAGAATTAAGAGCCCTTAAGCTG-TAACTTTGTCCTGTCTTCCTATTCAGAAAAATTTTCTGCTAGAATCTGTGCAAAAGTAACTGACACACCTGCAGTATGTGACAACATGAGAGATGTTCTCAACTCTTTTG
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              29182911 342 - 170955103 TCCACACAAACACACCTGGAAAAGCTACAGA----TGTTAACCTTTACTTTAAACACCAGCAACATAGATATCTAAGGAGATAAGATGTGAGACAAAGAGCTCAGGAAAAATCCGATAGAGACCAAATTCTCCAAATGGAAATTTTAAAGCCCACTGAGTAAATTTTTCCCGCATTCAAACAAGTGCTACAATACATTTAAGTCCTCAACTCACAGAATTAAGAGCCCTTAAGCTG-TAACTTTGTCCTGTCTTCCTATTCAGAAAAATTTTCTGCTAGAATCTGTGCAAAAGTAACTGACACACCTGCAGTATGTGACAACATGAGAGATGTTCTCAACTCTTTTG
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     2175443 342 -   2996164 TCCACACAAACACACCTGGAAAAGCTACAGA----TGTTAACCTTTACTTTAAACACCAGCAACATAGATATCTAAGGAGATAAGATGTGAGACAAAGAGCTCAGGAAAAATCCGATAGAGACCAAATTCTCCAAATGGAAATTTTAAAGCCCACTGAGTAAATTTTTCCCGCATTCAAACAAGTGCTACAATACATTTAAGTCCTCAACTCACAGAATTAAGAGCCCTTAAGCTG-TAACTTTGTCCTGTCTTCCTATTCAGAAAAATTTTCTGCTAGAATCTGTGCAAAAGTAACTGACACACCTGCAGTATGTGACAACATGAGAGATGTTCTCAACTCTTTTG
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012001495v1     2055899 343 -   2157725 TCCACACAAACACACCTGGAAAAGGTACAGA----TGTTAACCTTTACTTTAAACACCAGCAACATAGATATCTAAGGAGATAAGATGTAAGACAAAGAGCTCAGGAAAAATCCAATAGAGACCAAATTCTCCAAATGGAAATTTTAAAGCCCACTGAGTAAATTTTTCCTGCATTCAAACAAGTGCTACAATACATTTAAGTCCTCAACTCACGGAATTAAGAGCCCTTAAGCTGTTAACTTTGTCCTGTCTTCCTATTCAGAAAAATTTTCTGCTAGAATCTATGCAAAAGTAACTGACACACCTGCAGTATGTGACAACATGAGAGATGTTCTCAACTCTTTTG
i cerAty1.NW_012001495v1   I 1 C 0
s chlSab2.chr17             28486422 343 -  71996105 TCCACACAAACACACCTGGAAAAGCTACAGA----TGTTAACCTTTACTTTAAACACCAGCAACATAGATATCTAAGGAGATAAGGTGTGAGACAAAGAGCTCAGGAAAAATCCGATAGAGACCAAATTCTCCAAATGGAAATTTTAAAGCCCACTGAGTAAATTTTTCCTGCATTCAAACAAGTGCTACAATACATTTAAGTCCTCAACTCACAGAATTAGGAGCCCTTAAGCTGTTAACTTTGTCCTGTCTTCCTATTCAGAAAAATTTTCTGCTAGAATCTGTGCAAAAGTAACTGACACACCTGCAGTATGTGACAACATGAGAGATGTTCTCAACTCTTTTG
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             171568019 347 - 171630274 TCCACACAAACACACCTGGAAAAGCTGCTAACTTTTGTTAACTTTGACTTTAAACACCAACAACGTGGCTATCTAAGAAGATAAGATGTGAGACAAAGAGCTCAGGATCAATCCAATAGAGACCAAATTCTGCAAGTGGAAATTTTAAAGCCCACTGAGTACATTTTTCCTGCATGCATACAGGTGCTACAATACATTTAAGTCCTCAACTCACAGAATCAAGAGCCCTTAAGCTGTTAACTTTGTCCTGTCTTCCTATTCAGAAAAATTTCCCCCTAGAATGTGTGCAAAGGTAACTGACACACCTGCAGTATGTGACAACATGAGAGATGTTTTCAACTCATTCA
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            338833  40 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1781244  45 -   2232465 I
e manLeu1.NW_012104165v1     2193586 344 +   2316924 I

a score=10772151.000000
s hg38.chr6_GL000254v2_alt    341451 1960 +   4827813 TGAGGTGAAAGTTACTTTTTATAACTGAAAATGAAAAAGGAAGGTGCTATAGAGGGAAATAAAATTTCACCAAAGTATAAAAGTAAAGACTGGCTGAAACCTATAACTTTATAAATAAGAATAATAACAGTAACTTACACTATAATTAACTGCTCAATAGTGAATGATCTGCTACACATTCCTTGAGAAGGAATGACCCTAGCTTACCACAGTGGAAACCTGCCGCAATTACAAGGCCAGGATTCTGCCCCTTTTCTGGTTCTCTGTTCACAAGGTAATGCCACCTTCTCCAAGGCAGTTAGAGAGACAGGTGAGCTCAGGGGAGCTTCTCTCACCAACCTGCTAACTCAGCAGGAGTGAGTTTACCCAAATGAGCTCTGGCCTCCAA--TGTGTATCTGTTCATAATTTTATGAAGTATCTAAATGTCATTCATTAGTTTAA-AAAAGAATAGAAAACTCTGGACTAAGTAAATTTTGAACTCGAAAAGTTAGAAGGGGTATCAATTATATTAACAACACTTTCTTTAAAAATAGAATCACTTTCTTTTGAAATCAACCAGAGTGGTGAGATGTGTTTTTCTTTTCAGGTGCCCCATAATGGCACACAGCTTTACTCAGCAACCCCTGCCAGCTTCCAAGCCCCAGGATACTGACCTGCACCAGCACATGG----GGCAGCATTACCTCCCCAACAGTGTGGAGAAGAGAACATTTCACCACTGGGTGAT--GAGAGTAGACAGTGACTCTTGGCTTCTCAATGCT---AGA-C----------ATGATTGGAGACCTTTCATTGTTCTATTAGAAAAGTCCATGAAGAAGCTGTGAACAGGATCAGTCCAGAGGAGAAAAACTCTTATTTTCTCTGTCCAAACATCAGTCAATACATTGGGAGAGCCAGCAGAATCCCTCGCCCTAGCCTTGCCTCTTGAGCACACTGCACATGAACACTTCAGTGGGGTGAGCGTTCAGCTCCTAAAGGGCCATGTTCCTCTTTCCTGTGGTCTGTCCAGAAAGCCCAAATATCTCAAAGAGTTTTTCTTCACTTATTGCAT-TGTTCTGTCTATTTTGTTACCCAATATAAGGATTGGCACATTGGATATTATTTCATCAGTCATTAAAGCATTAAGCTCAACTTTAGATTCCATGAGGCCAGAATGATCTGCAGAATCCACCAG-AAAAACAATCTCATTAATTGCTTGGAGATAATTTTTTCAAACCTGACATGCTTGCTTGTGTCCACCAAGATCAAGAGTTGTAAAAGTCATTCCAGCAATTAATAGCTTTTCTGATGTCGGATGTAGTGTTGGAACATGTTGACCCAATCTGTCATCTTTGAGCATGTGAAGAAGAGTGGTTTTGCCTGCGTTGTCCAAACCGAAAAATACAAGTTTTCCAAATTTCTTGTAGAGTCCTAGGAACTGGAGCACACTGCTGAAGCCATTGTAGATCCACTCAAAGAGGAAAGACATTATTCATGCTTATTATGGCCTGAAGGGCTCCTCCAGCAAAGGTGGGTGGCCCAGGCCCTCCCTCAGAGCACACCCCAAATATTTTCAAATATGAAAACCTACTTACTCTTTAGAGGTAAGGAAGGTACTTTAAAAAA-----tttattttattttattta---------agttctgggatacatgtgtgggatgtgcaggtttgttacataag-taaacgtgtgccatggtggtttgctgcatctatcaacccatcacgtatgtattaagcccagcatgcattagctatttttcctgatgttctccctcccctctccacccccagacaggccccactgtgtgttgttctcctccctgtatccatgttttctcattgctcagctcatcattccatgagtgaaaacatgcagggtttggttttctgcataatggttcctgcataatggcttccagctccatccatgtccctgcaaaggacacgatcttgttcTAAAGGTACTTTAAAAAAAGTACTTT
s panTro5.chr6              29316188 1965 + 175400573 TGAGGTGAAAGTTACTTTTTATAACTGAAAATGAAAAAGGAAGGTGCTATAGAGGGAAATAAAATTTCACCAAAGTATAAAAGTAAAGACTGGCTGAAACCTATAACTTTATAAATAAGAATAATAACAGTAACTTACACTATAATTAACTGCTCAATAGTGAATGATCTGCTACTCATTCCTTGAGAAGGAATGACCCTAGCTTACCACAGTGGAAACCTGCCGCAATTACAAGGCCAGGATTCTGCCCCTTTTCTGGTTCTCTGTTCACAAGGTAATGCCACCTTCTCCAAGGCAGTTAGAGAGACAGGTGAGCTCAGGGGAGCTTCTCTCACCAACCTGCTAACTCAGCAGGAGTGAGTTTACCCAAATGAGCTCTGGCCTCCAA--TGTGTATCTGTTCATAATTTTATGAAGTATCTAAATGTCATTCATTAGTTTAA-AAAAGAATAGAAAACTCTGGACTAAGTAAATTTTGAACTCGAAAAGTTAGAAGGGGTATCAATTATATTAACAACACTTTCTTTAAAAATAGAATCACTTTCTTTTGAAATCAACCAGAGTGGTGAGATGTGTTTTTCTTTTCAGGTGCCCCATAATGGCACACAGCTTTACTCAGCAAGCCCTGCCAGCTTCCAAGCCCCAGGATACTGACCTGTACCAGCACATGG----GGCAGCATTACCTCCCCAACAGTGTGGAGAAGAGAACATTTCACCACTGGGTGAT--GAGAGTAGACAGTGACTCTTGGCTTCTCAATGCTTGGAGAGC----------ATGATTGGAGACCTTTCATTGTTCTATTAGAAAAGTCCATGAAGAAGCTGTGAACAGGATCAGTCCAGAGGAGAAAAACTCTTATTTTCTCTGTCCAAACATCAGTCAATACATTGGGAGAGCCAGCAGAATCCCTCGCCCTAGCCTTGCCTCTTGAGCACGCTGCACATGAACACTTCAGTGGGGTGAGCGTTCAGCTCCTAAAGGGCCATGTTCCTCTTTCCTGTGGTCTGTCCAGAAAGCCCAAATATCTCAAAGAGTTTTTCTTCACTTATTGCAT-TGTTCTGTCTATTTTGTTACCCAATATAAGGATTGGCACATTGGATATTATTTCATCAGTCATTAAAGCATTAAGCTCAACTTTAGATTCCATGAGGCCAGAATGATCTGCAGAATCCACCAG-AAAAACAATCTCATTAATTGCTTGGAGATAATTTTTTCAAACCTGACATGCTTGCTTGTGTCCACCAAGATCAAGAGTTGTAAAAGTCATTCCAGCAATTATTAGCTTTTCTGATGTCGGATGTAGTGTTGGAACATGTTGACCCAATCTGTCATCTTTGAGCATGTGAAGAAGAGTGGTTTTGCCTGCGTTGTCCAAACCCAAAAATACAAGTTTTCCAAATTTCTTGTAGAGTCCTAGGAACTGGAGCACACTGCCGAAGCCATTGTAGATCCACTCAAAGAGGAAAGACATTATTCATGCTTATTATGGCCTGAAGGGCTCCTCCAGCAATGGTGGGTGGCCCAGGCCCTCCCTCAGAGCACACCCCAAATATTTTCAAATATGAAAACCTACTTACTCTTTAGAGGTAAGGAAGGTACTTTAAAAAA----Ttttattttattttattta---------agttctgggatacatgtgtgggatgtgcaggtttgttacataag-taaacgtgtgccatggtggtttgctgcacctatcaacccatcacgtatgtattaagcccagcatgcattagctatttttcctgatgttctccctcccctctccacccccagacaggccccactgtgtgttgttctcctccctgtatccatgttttctcattgctcagctcatcattccatgagtgaaaacatgcagggtttggttttctgcataatggttcctgcataatggcttccagctccatccatgtccctgcaaaggacatgatcttgttcTAAAGGTACTTCAAAAAAAGTACTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29562177 1957 + 173848474 TGAGGTGAAAGTTACTTTTTATAACTGAAAATGAAAAAGGAAGGTGCTATAGAGGGAAATAAAATTTCACCAAAGTATAAAAGTAAAGACTGGCTGAAACCTATAACTTTATAAATAAGAATAATAACAGTAACTTACACTATAATTAACTGCTCAATAGTGAATGATCTGCTACTCATTCCTTGAGAAGGAATGACCCTAGCTTACCACAGTGGAAACCTGCCGCAATTACAAGGCCAGGATTCTGCCCCTTTTCTGGTTCTCTGTTCACAAGGTAATGCCACCTTCTCCAAGGCAGTTAGAGAGACAGGTGAGCTCAGGGGAGCTTCTCTCACCAACCTGCTAACTCAGCAGGAGTGAGTTTACCCAAATGAGCTCTGGCCTCCAA--TGTGTATCTGTTCATAATTTTATGAAGTATCTAAATGTCATTCATTAGTTTAA-AAAAGAATAGAAAACTCTGGACTAAGTAAATTTTGAACTCGAAAAGTTAGAAGGGGTATCAATTATATTAACAACACTTTCTTTAAAAATAGAATCACTTTCTTTTGAAATCAACCAGAGTGGTGAGATGTGTTTTTCTTTTCAGGTGCCCCATAATGGCACACAGCTTTACTCAGCAAGCCCTGCCAGCTTCCAAGCCCCAGGATACTGACCTGTACCAGCACATGG----GGCAGCATTACCTCCCCAACAGTGTGGAGAAGAGAACATTTCACCACTGGGTGAT--GAGAGTAGACAGTGACTCTTGGCTTCTCAATGCT---AGA-C----------ATGATTGGAGACCTTTCATTGTTCTATTAGAAAAGTCCATGAAGAAGCTGTGAACAGGATCAGTCCAGAGGAGAAAAACTCTTATTTTCTCTGTCCAAACATCAGTCAATACATTGGGAGAGCCAGCAGAATCCCTCGCCCTAGCCTTGCCTCTTGAGCACACTGCACATGAACACTTCAGTGGGGTGAGCGTTCAGCTCCTAAAGGGCCATGTTCCTCTTTCCTGTGGTCTGTCCAGAAAGCCCAAATATCTCAAAGAGTTTTTCTTCACTTATTGCAT-TGTTCTGTCTATTTTGTTACCCAATATAAGGATTGGCACATTGGATATTATTTCATCAGTCATTAAAGCATTAAGCTCAACTTTAGATTCCATGAGGCCAGAATGATCTGCAGAATCCACCAG-AAAAACAATCTCATTAATTGCTTGGAGATAATTTTTTCAAACCTGACATGCTTGCTTGTGTCCACCAAGATCAAGAGTTGTAAAAGTCATTCCAGCAATTATTAGCTTTTCTGATGTCGGATGTAGTGTTGGAACATGTTGACCCAATCTGTCATCTTTGAGCATGTGAAGAAGAGTGGTTTTGCCTGCGTTGTCCAAACCCAAAAATACAAGTTTTCCAAATTTCTTGTAGAGTCCTAGGAACTGGAGCACACTGCCGAAGCCATTGTAGATCCACTCAAAGAGGAAAGACATTATTCATGCTTATTATGGCCTGAAGGGCTCCTCCAGCAACGGTGGGTGGCCCAGGCCCTCCCTCAGAGCACACCCCAAATATTTTCAAATATGAAAACCTACTTACTCTTTAGAGGTAAGGAAGGTACTTTTAAAAA----ATTTAttttat----ttta---------agttctgggatacatgtgtgggatgtgcaggtttgttacataag-taaacgtgtgccatggtggtttgctgcacctatcaacccatcacgtatgtattaagcccagcatgcattagctatttttcctgatgttctccctcccctctccacccccagacaggccccactgtgtgttgttctcctccctgtatccatgttttctcattgctcagctcatcattccatgagtgaaaacatgcagggtttggttttctgcataatggttcctgcataatggcttccagctctatccatgtccctgcaaaggacacgatcttgttcTAAAGGTACTTCAAAAAAAGTACTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5359502 1959 +   6154872 TGAGGTGAAAGTTACTTTTTGTAACTGAAAATGAAAAAGGAAGGTGCTATAGAGGGAAATAAAATTTCACCAAAGTATAAAAGTAAAGACTGGCTGAAACCTATAACTTTATAAATAAGAATAATAACAGTAACTTACACTATAATTAACTGCTCAATAGTGAACGATCTGCTACACATTCCTTGAGAAGGAATGACCCTAGCTTACCACAGTGGAAACCTGCCGCAATTACAAGGCCAGGATTCTGCCCCTTTTCTGGTTCTCTGTTCACAAGGTAATGCCGCCTTCTCCAAGGCAGTTAGAGAGACAGGTGAGCTCAGGGGAGCTTCTCTCACCAACCTGCTAACTCAGCAGGAGTGAGTTTACCCAAATGAGCTCTGGCCTCCAA--TGTGTATCTGTTCATAATTTTATGAAGTATCTAAATGTCATTCATTAGTTTAA-AAAAGAATATAAAACTCTGGACTAAGTAAATTTTGAACTCGAAAAGTTAGAAAGGGTATCAATTATATTAACAACACTTTCTTTAAAAATAGAATCACTTTGTTTTGAAATCAACCAGAGTGGTGAGATATGTTTTTCTTTTCAGGTGCCCCATGATGGCACACAGCTTTACTCAGCAAGCCCTGCCAGCTTCCAAGCCCCTGGATACTGACCTGCACCAGCACATGG----GGCAGCATTACCTCCCCAACAGTGTGGAGAAGAGAACATTTCACCATTGGTTGAT--GACAGTAGACAGTGACTCTTGGCTTCTCAATGCT---AGA-C----------ATGACTGGAGACCTTTCATTGTTCTATTAGAAAAGTCCATGAAGAAGCTGTGAATAGGATCAGTCCAGAGGAGAAAAACTCTTATTTTCACTGTCCAAACATCAGTCAATACATTGGGAGAGCCAGCAGAATCCCTCGCCCTAGCCTTGCCTCTTGAGCACACTGCACATGAACACTTCCGAGGGGTGAGCGTTCAGCTCCTAAAGGGCCATGTTCCTCTTTCCTGTGGTCTGTCCAGAAAGCCCAAATATCTCAAAGAGTTTTTCTTCACTTATTGCAT-TGTTCTGTCTATTTTGTTACCCAATATAAGGATTGGCACATTGGATATTATTTCATCAGTCATTAAAGCATTAAGCTCAACTTTAGATTCCATGAGGCCAGAATGATCTGCAGAATCCACCAG-AAAAACAATCTCATTAATTGCTGGGAGATAATTTTTTCAAACCTGACATGCTTGCTTGTGTCCACCAAGATCAAGAGTTGTAAAAGTCATTCCAGCAATTATTAGCTTTTCTGATGTAGGATGTAGTGTTGGAACATGTTGACCCAATCTGTCATCTTTGAGCATGTGAAGAAGAGTGGTTTTGCCTGCGTTGTCCAAACCCAAAAATACAGGTTTTCCAAATTTCTTGTAGAGTCCTAGGAACTGGAGCACACTGCTGAAGCCATTGTAGATCCACTCAAAGAGGAAAGACATTATTCATGCTTATTATGGCCTGAAGGGCTCCTCCAGCAACGGTGGGTGGCCCAGGCCCTCCCTCAGAGCACACCCCAAATATTTTCAAATATGAAAACCTACTTACTCTTTAGAGGTAAGGAAGGTACTTTAAAACA----Atttattttattttattta---------agttctgggatacatgtgtgggatgtgcaggtttgttacataag-taaac--gtgccatggtggtttgctgcacctatcaacccatcacctatgtattaagcccagcatgcattagctatttttcctgatgttctccctcccctctccaccccgagacaggccccactgtgtgttgttctcctccctgtatcgatgttttctcattgctcagctcatcattccatgagtgaaaacatgcagggtttggttttctgcataatggttcctgcataatggcttccagctccatccatgtccctgcaaaggacacgatcttgttcTAAAGGTACTTTAGAAAAAGTACTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74371589 1941 + 122973662 TGAGGTGAAAGTTACTTTTTATAACTGAAAATGAAAAAGGAAGGTGCTATAGAGGGAAATAAAATTTCACCAAAGTATAAAAGTAAAGACTGGCTGAAGCCTATAACTTTATAAATAAGAATAATAACAATAACTTACACTACAATTAACTGCTCAATAGTGAATGATCTGCTACACATTCCTTGAGAAGGAATGAACCTAGCTTACCACAGTGGAAACCTGCCACAACTACAAGGCCAGGATTCTGCCCCTTTTCTGGTTCTCTGTTCACAAGGTAATGCCACCTTCTCCAAGGCAGTTAGACAGGTAGGTGAGCTCAGGGGAGCTTCTCTCATCAACCTGCTAACTCAGCAGGAGTGAGTTTACCCAAATGAGCTCTGGCCTCCGA--TTTGTATCTGTTCATAATTTTACGAAGTATCTAAATGTCATTCATTAGTTAAA-AAAAGAATAGAAAACT-----CTAAGTAAATTTTGAACTCAAAAAGTTAGAAGGGGTATCACTTGTATTAACAACACTTTCTTTAAAAATAGAATCACTTTCTTTTGAAATCAGCCAGAGTGGTGAGATGTGTTTTTCTTTTCAGGTGCCCCATGATGGCACACAGCTTTACTCAGCAAGCCCTGCCAGCTTCCAAACCCCAGGATACTGACCTGCACCAGCATGTGGGGCAGGCAGCATTACCTCCCCAACTGTGTGGAGAAGAGAACATTTCACCACTGGGTGATGAGAGAGTTGACAGAGAATCTTGGCTTCTCAATGCC---AGA-C----------ATGATTGGAGACCTTTCATTGTTCTATTAGAAAAGTCCATGAAGAAGCTGTGAATAGGATCAGTCCAGAGAAGAAAAACTCTTATTTTCACTGTCCAAACATCAGTCAATATATTGAGAGAGCCAGCAGAATCCCTCGCCCTAGCCTTGCCTCTTGAGCACACTGCACATGAACACTTCCGTGGGGTGAGCGTTCAGCTCCTAAAGGGCCATGTTCCTCTTTCCTGTGGTCTGTCCAGAAAGCCCAAATATCTCAGAG---TTTTTCTCACTGATTGCAT-TGTTCTGTCTATTTTGTTACCCAAGATAAGGATTGGCACATTGAATATTGTTTCATCAGTCATTAAAGCATTAAGCTCTACTTTAGATTCCATGAGGCCAGAATGATCTGCAGAATCCACCAG-AAAAACAATCTCATTAATTGCTGGGAGATAATTTTTTCAAACCAGACATGCTTGCCTGTGTCCGCCAAGATCAAAAGTTGTAAAAGTCATTCCAGCAATTATTAGCTTTTCTGATGTCATATGTAGTGTTGGAACATGTTGACCCAATCTGTCATCTTTGAGCATGTGAAAAAGAGTGGTTTTGCCTGCGTTGTCCAAACCCAAAAATACAAGTTTTCCACATTTCTTGTAGAGTCCTAGGAACTGGAGCACACTGCTGAAGCCATTGTAGATCCACTCAAAGATGAAAGACATTATTCATGCTTACCATGGCCTGAAGGGCTCCTTCGGCAATGGTGGGTGGCCCAGGCCCTCCCTCAGAGCACACCCCAAATATTTCCAGATATGAAAACCTACTT----TTTAGAGGTAAGGAAGATACTTTTAAAAA-------------AATTTAttta---------agttctcggatacatgtgcgggatgtgtaggtttgttacataag-taaacgtgtgccatggtggtttgctgcacctatcaacccatcacctatatattaagctcagcatgcattagctg--tttcctgatgttctccctccccgctccacccccagccaggccccactgtgtgttatt---ctccccgtgtccatgttttctcattgctcagctcatcactccatgagtgaaaacatgcagggtttggttttctgcataatggttcctgcataacggcttccagctccatccatgtccctgcaaaggacacgatcttgttcTAAAGGTACTTAAAAAAAAGTACTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29522141 1964 + 172585720 TGAGGTGAAAGTCACTTTTTAGAACTGAAAATGAAAAAGGAAGGTGCTATAGAGGGAAATGAAATTTCACCAAAGTATAAAAGCAAATACTGGCTGAAGTCTATAACTTTATAAATAAGAATAATAACAATAACTTATACTATAATTATCTGCTTAACAGTGAACAGTCTGCTACACATTCCTTGGTGAGGAATGACCCTAGCTTACCACAGTGGAAACCTGCCACAACTACAAGACCAGG-TTCTGCCCCTTTTCTAGTTCTCTGTTCAGAAGGTAATGCCACCTTCTCCAAGGCAGTTAAAGAGACAGGTGAGCTCAGGGGAGCTTCTCTCACCAACCTGCTAACTCAGCAGGAGTGAGTTCACCCAAATGAGCTCTGGCCTCCAATGTGTGTATCTGCTTATAATTTCATGAAGTATCTAAACGTCATTCATTAGTTAAA-AAAAGAATAGAAAACTCTGGACTAAGTAAATTTTGGACTCAGAAAGTTAGAAGGGGTATCAATTATATTAACAACACTTTCTTTAAAAATAGAATCATTTTCTTTTGAAATCAACCAGAGTGATGAGATGTGTTTTTCTTTTCAGGTGCGCCATGATGGTGCACAGCTTCACTCAGCAAACCCTGCCAGCTTCCAAGCCCCAGGATACTGACCTGCACCAGCATGTGG----GGCAGCATTACCTCCCCAACAGTGTGGAGAAGAGAACATTTCACCACTGGGTGATGAGAGAGTTGACAGAGATTCTTGGCTTCTCAACGCC---AGA-CATGATTGGAGATGATTGGAGACCTTTCCTCGTTCTATTAGAAAAGTCCATGAAGAAGCTGTGAATAGGATCAGTCCAGAGAAGAAAAACTCTTATTTTCACTGTCCAAACATCAGCCAATATATTGGGAGAGCCAGCAGAATCCCTCGCCCTCGCCTTGCCTCTTGAGCACGCTGCACATGAACACTTCCACGGGGTGAGCGTTCAGCTCCTAAAGGGCCACGTTCCTCTTTCCTGTGGTCTATCCAGAAAGCCCAAATATCTCAAAGAGTTTTTCTTCACTGATTGCAT-TGTTCTGTCTATTTTGTTACCCAGGATAAGGATTGGCACATTGGATATTATTTCATCAGTCATTAAAGCATTAAGCTCAACTTTGGATTCCCTGAGGCCAGAATGATCTACAGAGTTCACCAG-AAAAACAATCCCATTAATTCCTGGGAGATAATTTTTTCAAACCTGACATGGTTGCTTGTGTCCACCAAGATCAAAAGTTGTAAAAGTCATTCCAGCAATTATTAGCTTTTCTGATGTCAGATGTAGTGTTGGAACATGTTGACCCAATCTGTCATCTTTGAGCATGCGAAGAAGAGTGGTTTTGCCTGCATTGTCCAAACCCAAGAATACAAGTTTTCCAAATTTCTTGTGGAGTCC-AGGAACTGGAGAACACTGCTGAAGCCATTGTAGATCCACTCAAAGATGAAAGACATTATTCGTGCTTACTATGTCCTGAAGGGCTCCTCTTGCAACAGTGGGTGGCCTGGGCCCTCCCTCAGAGCACACCCCAAATATTTTCAGATATGAAAACCTACTTACTCTTTAGAGGTAAGGAAGGTACTTCTAAAAA----ATGTATTGTAttttattta---------agttctgggatacatgtgcaggatgtgcaggtttgttacataagttaaacgtgtgccatggtggtttgctgcacctattaactcatcacctatgtattaagtccagcatgagttagctatttttcctgctgttctgc--cccctctccacccctggacaggccccattgtgtgatgttttcctcccggtatcagtgttttctcattgctcagctcatcactgcatgagtgaaaacatgcagtgcttggttttct--------gttcctgcataatggcttccagctccatccatgtctctgcaaaggacacgactttgttcTAAAGGTACTTGAAAAAAAGTACTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29183253 1964 - 170955103 TGAGGTGAAAGTCACTTTTTAGAACTGAAAATGAAAAAGGAAGGTGCTATAGAGGGAAATGAAATTTCACCAAAGTATAAAAGCAAATACTGGCTGAAGTCTATAACTTTATAaataagaataataacaataacttatactataattatCTGCTTAACAGTGAACAGTCTGCTACACATTCCTTGATGAGGAATGACCCTAGCTTACCACAGTGGAAACCTGCCACAACTACAAGACCAGG-TTCTGCCCCTTTTCTAGTTCTCTGTTCAGAAGGTAATGCCACCTTCTCCAAGGCAGTTAAAGAGACAGGTGAGCTCAGGGGAGCTTCTCTCACCAACCTGCTAACTCAGCAGGAGTGAGTTCACCCAAATGAGCTCTGGCCTCCAATGTGTGTATCTGCTTATAATTTTATGAAGTATCTAAACGTCATTCATTAGTTAAA-AAAAGAATAGAAAACTCTGGACTAAGTAAATTTTGGACTCAGAAAGTTAGAAGGGGTATCAATTATATTAACAACACTTTCTTTAAAAATAGAATCATTTTCTTTTGAAATCAACCAGAGTGATGAGATGTGTTTTTCTTTTCAGGTGCGCCATGATGGTGCACAGCTTCACTCAGCAAACCCTGCCAGCTTCCAAGCCCCAGGATACTGACCTGCACCAGCATGTGG----GGCAGCATTACCTCCCCAACAGTGTGGAGAAGAGAACATTTCACCACTGGGTGATGAGAGAGTTGACAGAGATTCTTGGCTTCTCAACGCC---AGA-CATGATTGGAGATGATTGGAGACCTTTCCTCGTTCTATTAGAAAAGTCCATGAAGAAGCTGTGAATAGGATCAGTCCAGAGAAGAAAAACTCTTATTTTCACTGTCCAAACATCAGCCAATATATTGGGAGAGCCAGCAGAATCCCTCGCCCTAGCCTTGCCTCTTGAGCACGCTGCACACGAACACTTCCACGGGGTGAGCGTTCAGCTCCTAAAGGGCCACGTTCCTCTTTCCTGTGGTCTATCCAGAAAGCCCAAATATCTCAAAGAGTTTTTCTTCACTGATTGCAT-TGTTCTGTCTATTTTGTTACCCAGGATAAGGATTGGCACATTGGATATTATTTCATCAGTCATTAAAGCATTAAGCTCAACTTTGGATTCCCTGAGGCCAGAATGATCTACAGAGTTCACCAG-AAAAACAATCCCATTAATTCCTGGGAGATAATTTTTTCAAACCTGACATGGTTGCTTGTGTCCACCAAGATCAAAAGTTGTAAAAGTCATTCCAGCAATTATTAGCTTTTCTGATGTCAGATGTAGTGTTGGAACATGTTGACCCAATCTGTCATCTTTGAGCATGCGAAGAAGAGTGGTTTTGCCTGCATTGTCCAAACCCAAGAATACAAGTTTTCCAAATTTCTTGTGGAGTCC-AGGAACTGGAGAACACTGCTGAAGCCATTGTAGATCCACTCAAAGATGAAAGACATTATTCGTGCTTACTATGTCCTGAAGGGCTCCTCTTGCAACAGTGGGTGGCCTGGGCCCTCCCTCAGAGCACACCCCAAATATTTTCAGATATGAAAACCTACTTACTCTTTAGAGGTAAGGAAGGTACTTCTAAAAA----ATGTATTGTAttttattta---------agttctgggatacatgtgcaggatgtgcaggtttgttacataagttaaacgtgtgccatggtggtttgctgcacctattaactcatcacctatgtattaagtccagcatgagttagctatttttcctgctgttctgc--cccctctccacccctggacaggccccattgtgtgatgttttcctcccggtatcagtgttttctcattgctcagctcatcactgcatgagtgaaaacatgcagtgcttggttttct--------gttcctgcataatggcttccagctccatccatgtctctgcaaaggacacgactttgttcTAAAGGTACTTGAAAAAAAGTACTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2175785 1964 -   2996164 TGAGGTGAAAGTCACTTTTTAGAACTGAAAATGAAAAAGGAAGGTGCTATAGAGGGAAATGAAATTTCACCAAAGTATAAAAGCAAATACTGGCTGAAGTCTATAACTTTATAaataagaataataacaataacttatactataattatCTGCTTAACAGTGAACAGTCTGCTACACATTCCTTGATGAGGAATGACCCTAGCTTACCACAGTGGAAACCTGCCACAACTACAAGACCAGG-TTCTGCCCCTTTTCTAGTTCTCTGTTCAGAAGGTAATGCCACCTTCTCCAAGGCAGTTAAAGAGACAGGTGAGCTCAGGGGAGCTTCTCTCACCAACCTGCTAACTCAGCAGGAGTGAGTTCACCCAAATGAGCTCTGGCCTCCAATGTGTGTATCTGCTTATAATTTTATGAAGTATCTAAACGTCATTCATTAGTTAAA-AAAAGAATAGAAAACTCTGGACTAAGTAAATTTTGGACTCAGAAAGTTAGAAGGGGTATCAATTATATTAACAACACTTTCTTTAAAAATAGAATCATTTTCTTTTGAAATCAACCAGAGTGATGAGATGTGTTTTTCTTTTCAGGTGCGCCATGATGGTGCACAGCTTCACTCAGCAAACCCTGCCAGCTTCCAAGCCCCAGGATACTGACCTGCACCAGCATGTGG----GGCAGCATTACCTCCCCAACAGTGTGGAGAAGAGAACATTTCACCACTGGGTGATGAGAGAGTTGACAGAGATTCTTGGCTTCTCAACGCC---AGA-CATGATTGGAGATGATTGGAGACCTTTCCTCGTTCTATTAGAAAAGTCCATGAAGAAGCTGTGAATAGGATCAGTCCAGAGAAGAAAAACTCTTATTTTCACTGTCCAAACATCAGCCAATATATTGGGAGAGCCAGCAGAATCCCTCGCCCTAGCCTTGCCTCTTGAGCACGCTGCACACGAACGCTTCCACGGGGTGAGCGTTCAGCTCCTAAAGGGCCACGTTCCTCTTTCCTGTGGTCTATCCAGAAAGCCCAAATATCTCAAAGAGTTTTTCTTCACTGATTGCAT-TGTTCTGTCTATTTTGTTACCCAGGATAAGGATTGGCACATTGGATATTATTTCATCAGTCATTAAAGCATTAAGCTCAACTTTGGATTCCCTGAGGCCAGAATGATCTACAGAGTTCACCAG-AAAAACAATCCCATTAATTCCTGGGAGATAATTTTTTCAAACCTGACATGGTTGCTTGTGTCCACCAAGATCAAAAGTTGTAAAAGTCATTCCAGCAATTATTAGCTTTTCTGATGTCAGATGTAGTGTTGGAACATGTTGACCCAATCTGTCATCTTTGAGCATGCGAAGAAGAGTGGTTTTGCCTGTATTGTCCAAATCCAAGAATACAAGTTTTCCAAATTTCTTGTGGAGTCC-AGGAACTGGAGAACACTGCTGAAGCCATTGTAGATCCACTCAAAGATGAAAGACATTATTCGTGCTTACTATGTCCTGAAGGGCTCCTCTTGCAACAGTTGGTGGCCTGGGCCCTCCCTCAGAGCACACCCCAAATATTTTCAGATATGAAAACCTACTTACTCTTTAGAGGTAAGGAAGGTACTTCTAAAAA----ATTTATTGTAttttattta---------agttctgggatacatgtgcaggatgtgcaggtttgttacataagttaaacgtgtgccatggtggtttgctgcacttattaactcatcacctgtgtattaagtccagcatgagttagctatttttcctgctgttctgc--cccctctccacccctggacaggccccattgtgtgatgttttcctcccggtatcagtgttttctcattgctcagctcatcgctgcatgagtgaaaacatgcggtgcttggttttct--------gttcctgcataatggcttccagctccatccatgtctctgcaaaggacacgactttgttcTAAAGGTACTTGAAAAAAAGTACTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2056242 1962 -   2157725 TGAGGTGAAAGTCACTTTTTATAACTGAAAATGAAAAAGGAAGGTGCTATAGAGGGAAATGAAATTTCACCAAAGTATAAAAGCAAATACTGGCTGAAGTCTATAACTTTATAaataataataataataataacttatactataattatCTGCTCAACAGTGAACAGTCTGCTACACATTCCTTGATGAGGAATGACCCTAGTTTACCACAGTGGAAACCTGCCACAACTACAAGACCAGG-TTCTGCCCCTTTTCTAGTTCTCTGTTCAGAAGGTAATGCCACCTTCTCCAAGGCAGTTAGAGAGACAGGTGAGCTCAGGGGAGCTTCTCTCACCAACCTGCTAACTCAGCAGGAGTGAGTTCACCCAAATGAGCTCTGGCCTCCAATGTGTGTATCTGCTCATAATTTTATGAAGTATCTAAATGGCATTCATTACTTAAA-AAAAGAATAGAAAACTCTGGACTAAGTAAATTTTGGACTCAGAAAGTTAGAAGGGGTATCAATTATATTAACAACACTTTCTTTAAAAATAGAATCATTTTCTTTTGAAATCAACCAGAGTGATGAGATGTGTTTTTCTTTTCAGGTGCGCCATGATGGTGCACAGCTTCACTCAGCAAACCCTGCCAACTTCCAAGCCCCAGGATACTGACCTGCACCAGTATGTGG----GGGAGCATTACCTCCCCAACAGTGTGGAGAACAGAACATTTCACCACTGGGTGATGAGAGAGTTGACAGAGATTCTTGGCTTCTCAACGCC---AGA-CGTGATTGGAGATGATTGGAGACCTTTCCTCGTTCTATTAGAAAAGTCCATGAAGAAGCTGTGAATAGGATCAGTCCAGAGAAGAAAAACTCTTATTTTCACTGTCCAAACATCAGCCACTATATTGGGAGAGCCAGCAGAATCCCTCGCCCTAGCCTTGCCTCTTGAGCACGCTGCACACGAACACTTCCACAGGGTGAGCGTTCAGCTCTTAAAGGGCCACGTTCCTCTTTCCTGTGGTCTATCCAGAAAGCCCAAATATCTC--AGAGTTTTTCTTCACTGATTGCAT-TGTTCTGTCTATTTTGTTACCCAGGATAAGGATTGGCACATTGGATATTATTTCATCAGTCATTAAAGCATTAAGCTCAACTTTGGATTCCCTGAGGCCAGAATGATCTGCAGAGTCCACCAG-AAAAACAATCCCATTAATTCCTGGGAGATAATTTTTTCAAACCTGACATGGTTGCTTGTGTCCACCAAGATCAAAAGTTGTAAAAGTCATTCCAGCAATTATTAGCTTTTCTGATGTCAGATGTAGTGTTGGAACATGTTGACCCAATCTGTCATCTTTGAGCATGCGAAGAAGAGTGGTTTTGCCTGCATTGTCCAAACCCAAGAATACAAGTTTTCCAAATTTCTTGTAGAGTCC-TGGAACTGGAGAACACTGCTGAAGCCATTGTAGATCCACTCAAAGATGAAAGACATTATTCGTGCTTACTATGTCCTGAAGGGCTCCTCTTGCAACAGTGGGTGGCCTGGGCCCTCCCTCAGAGCACACCCCAAATATTTTCAGATATGAAAACCTACTTACTCTTTAGAGGTAAGGAAGGTACTTCTAAAAA----ATTTATTGTAttttattta---------agttctgggatacatgtgcaggatgtgcaggtttgttacataggttaaacgtgtgccatggtggtttgctgcacctattaactcatcacctatgtattaagtccagcatgagttagctatttttcctgctgttctgc--cccctctccacccctggacaggccccattgtgtgttgttttcctccctgtgtcaatgttttctcattgctcagctcatcactgcatgagtgaaaacatgcagtgcttggttttct--------gttcctgcataatggcttccagctccatccatgtctctgcaaaggacacgactttgttcTAAAGGTACTTAAAAAAAAGTACTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28486765 1954 -  71996105 TGAAGTGAAAGTCACTTTTTAGAACTGAAAATGAAAAAGGAAGGTGCTATAGAGGGAAATGAAATTTCACCAAAGTATAAAAGCAAACACTGGCTGAAGTCTATAACTTTATAaataagaataataacaataacttatactataattatCTGCTCAACAGTGAACAGTCTGCTACACATTCCTTGATGAGGAATGACCCTAGCTTACCACAGTGGAAACCTGCCACAACTACAAGGCCAGG-TTCTGTGCCTTTTCTAGTTCTCTGTTCAGAAGGTAATGCCATCTTCTCCAAGGCAGTTAGAGAGACAGGTGAGCTCAGGGGAGCTTCTCTCACCAACCTGCTAACTCAGCAGGAGTGAGTTCACCCAAATGAGCTCTGGCCTCCAATGTGTGTATCTGTTCATAATTTTATGAAGTATCTAAATGTCATTCATTAGTTAAA-AAAAGAATAGAAAACTCTGGACTAAGTAAATTTTGGACTCAGAAAGTTAGAAGGGGTATCAATTATATTAACAGCACTTTCTTTAAAAATAGAATCATTTTCTTTTGAAATCAAGCAGAGTGGTGAGATGTGTTTTTCTTTTCAGGTGCCCCATGATGGTGCACAGCTTCACTCAGCAAACCCTGCCAGCTTCCAAGCCCCAGGATACTGACCTGCACCAGCATGTGG----GGCAGCATTACCTCCCCAACAGTGTGGAGAAGAGAACATTTCACCACTGGGTGATGAGAGAGTTGACAGAGGCTCTTGGCTTCTCAACGCC---AGA-C----------ATGATTGGAGACCTTTCCTCGTTCTATTAGAAAAGTCCATGAAGAAGCTGTGAATAGGATCAGTCCAGAGAAGAAAAACTGTTATTTTCACTGTCCAAACATCAGCCAATATATTGGGAGAGCCAGCAGAATCCCTCGCCCTAGCCTTGCCTCTTGAGCACACTGCCCTTGAACACTTCCATGGGGTGAGCGTTCAGCTCCTAAAGGGCCACATTCCTCTTTCCTGTGGTCTATCCAGAAAGTCCAAATACCTCAAATAGTTTTTCTTCACTGATTGCAT-TGTTCTGTCTATTTTGTTACCCAGGATAAGGATTGGCACATTGGATATTATTTCATCAGTCATTAAAGCATTAAGCTGAACTTTGGATTCCATGAGGCCAGAATGATCTGCAGAGTCCACCAG-AAAAACAATCCCATTAATTCCTGGGAGATAATTTTTTCAAACCTGACATGGTTGCTTGTGTGCACCAAGATCAAAAGTTGTAAAAGTCATTCCAGCAATTATTAGCTTTTCTGATGTCAGATGTAGTGTTGGAACATGTTGACCCAGTCTGTCATCTTTGAGCATGTGAAGAAGAGTGGTTTTGCCTGCATTGTCCAAACCAAAGAATATAAGTTTTCCAAATTTCTTGTAGAGTCC-AGGAACTGGAGAACACTGCTGAAGCCATTGTAGATCCACTCAAAGATGAAAGACATTATTCATGCTTACTATGTCTTGAAGGGCTCCTCCTGCAACAGTGGGTGGCCTGGGCCCTCCCTCAGAGCACACCCCAAATATTTTCAGATATGAAAACCTACTTACTCTTTAGAGGTAAGGAAGGTATGTCTAAAAA----ATTTATTGTAttttattta---------agttctgggatacatgtgcaggatgtgcaggtttgttacacaggttaaacgtgtgccatggtggtttgctgcacctataaacccatcacctatgtattaagtccagcatgagttagctatttttcctgatgttctgc--cccctctccacccctggacaggccccactgtgtgttgttctcctccctgtgtcaatgttttctcattgctcagctcatcactgcacaagtgaaaacatgcagtgcttggttttct--------gttactgcataatggcttccagctccatccatgtctctgcaaaggacatgaccttgttcTAAAGGTACTTAAAAGAAAGTACTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2193930 1960 +   2316924 TGAGGTGAAAGTCACTTTTTAGAACTGAAAATGAAAAAGGAAGGTGCTATAGAGGGAAATGAAATTTCACCAAAGTATAAAAGCAAATACTGGCTGAAGTCTATAACTTTATAaataagaataat---aataacttatactataattatCTGCTCAACAGTGAACAGTCTGCTACACATTCCTTGATGAGGAATGACCCTAGCTTACCACAGTGGAAACCTGCCACAACTACAAGACCAGG-TTCTGCCCCTTTTCTAGTTCTCTGTTCAGAAGGTAATGCCACCTTCTCCAAGGCAGTTAGAGAGACAGGTGAGCTCA-GGGAGCTTCTCTCACCAACCTGCTAACTCAGCAGGAGTGAGTTCACCCAAATGAGCTCTGGCCTCCAATGTGTGTATCTGCTCATAATTTTATGAAGTATCTAAATGGCATTCATTACTTAAA-AAAAGAATAGAAAACTCTGGACTAAGTAAATTTTGGACTCAGAAAGTTAGAAGGGGTATCAATTATATTAACAACACTTTCTTTAGAAATAGAATCATTTTCTTTTGAAATCAACCAGAGTGATGAGATGTGTTTTTCTTTTCAGGTGCGCCATGATGGTGCACAGCTTCACTCAGCAAACCCTGCCAGCTTCCAAGCCCCAGGATGCTGACCTGCACCAGCATGTGG----GGGAGCATTACCTCCCCAACAGTGTGGAGAAGAGAACATTTCACCACTGGGTGATGAGAGAGTTGACAGAGATTCTTGGCTTCTCAACGCC---AGA-CGTGATTGGAGATGATTGGAGACCTTTCCTCGTTCTATTAGAAAAGTCCATGAAGAAGCTGTGAATAGGATCAGTCCAGAGAAGAAAAACTCTTATTTTCACTGTCCAAACATCAACCAATATATTGGGAGAGCCAGCAGAATCCCTCGCCCTAGCCTTGCCTCTTGAGCACGCTGCACACGAACACTTCCACAGGGTGAGCGTTCAGCTCTTAAAGGGCCACGTTCCTCTTTCCTGTGGTCTATCCAGAAAGCCCAAATATCTCAAAGAGTTTTTCTTCACTGATTGCAT-TGTTCTGTCTATTTTGTTACCCAGGATGAGGATTGGCACATTGGATATTATTTCATCAGTCATTAAAGCATTAAGCTCAACTTTGGATTCCATGAGACCAGAATGACCTGCAGAGTCCATCAG-AAAAACAATCCCATTAATTCCTGGGAGATAATTTTTTCAAACCTGACATGGTTGCTTGTGTCCACCAAGATCAAAAGTTGTAAAAGTCATTCCAGCAATTATTAGCTTTTCTGATGTCAGATGTAGTGTTGGAACATGTTGACCCAATCTGTCATCTTTGAGCATGCGAAGAAGAGTGGTTTTGCCTGCATTGTCCAAACCCAAGAATACAAGTTTTCCAAATTTCTTGTAGAGTCC-AGGAACTGGAGAACACTGCTGAAGCCATTGTAGATCCACTCAAAGATGAAAGACATTATTCATGCTTACTATGTCCTGAAGGGCTCCTCTTGCAACAGTGGGTGGCCTGGGCCCTCCCTCAGAGCACACCCCAAATATTTTCAGATATGAAAACCTACTTACTCTTTAGAGGTAAGGAAGGTACTTCTAAAAA----ATTTATTGTAttttattta---------agttctgggatacatgtgcaggatgtgcaggtttgttacataggttaaacgtgtgccatggtggtttgctgcacctattaactcatcacctatgtattaagtccagcatgagttagctatttttcctgctgttctgc--cccctctccacccctggacaggccccattgtgtgttgttttcctccctgtgtcaatgttttctcattgctcagctcatcactgcatgagtgaaaacacacagtgcttggttttct--------gttcctgcataatggcttccagctccatccatgtctctgcaaaggacacgactttgttcTAAAGGTACTTAAAAAAAAGTACTTT
i manLeu1.NW_012104165v1   I 344 C 0
s calJac3.chr4             171568366 1940 - 171630274 TGAGGTGAAAGTCATGTTTTATAACTAAAAATGAAAAAGGGAGGTGCTATAGAGGGAAAGGAAATTTCACCAAAGTATAGAATCAAAGACTGGCTGAAGTCTATAACTTTATAAGTAAGAATAATAACAATAACCTGCACTATAATTAACTGCTCAACAGTGAACAATCTGCTACACATTCCTTGATGAGGAATGACCCTAGCTTACCACAGTGGAAACCTGCCACAACTGCAAGGCCAGGATTCTGCTCCTTTCCTAGTTCTCTGTGCATAAGGTAATTCTACCTTCTCCAAGGCAGTTAAAGAGACAGGTGAGCTCAGGGGAGCTTCTCTCACCAACCTGCTAACTCCGCAGGAGTGGGTTCACCTGAATGAGCTCTGGCCTCCAA--TGTGTATCTGTTCATAACTTTATGAAGTATCTAAATGTTATTCATTAGTTAAAGAAAAGAATAGAAAACTCTGGACTAAGTAAATTTTAAACTCAAAAAGTTAGAAGGGGTATCAATTATATTAACA----CTTGTTTAAAATTAGAATCACTTTCTTTTGAAACCAACCATAGTAGTGAGATGT------------------CCTGTGATGGCTCACAGCTTTACTGAGAAAATCCTGCCGGCTTCCAAGTCCCGGGATACTGACCTGCACCAGCATGTGG----GGCAGCATTACCTCCCCAACAGTGTGGAGAAGAGAACGTTTCACCGCTGTGTGGTGAGAGAGTTCACAGA----CTTGGCTTCTCAACTGC---AGA-C----------ATGATTGGAGACCTTTCCTTGTTCTATTAAAAACGTTCATGAAGAAGTTGTGAATTGGATCAATCCAGAGAAGAAAAACTCTTATTTTCACTGTCCACACATCAGTCAATACACTGGGAGAGCCAGCAGCATTCCTCGCCGTTGCCTTGCCTCTTGAGCACACTGCACATGAACACTTCCATGGGGTGAGCATTCAGCTTCTGAAGGGCCACATTCCTCTTTACTGTGGTCTTTCCAGAAAGCCCAAATATCTCACAGACTTTTTCTTCACTGATTGCATCCATTCTTCACATTTTGTTACCCAAGATAAGAATTGGCACATTGGATATTATTTCATCAGTCATTAAAGCATTAAGCTGAACTTTGGATTCCATGAGGCCAGAATGATCTGCAAAGTCCACCAGAAAAAATAATCTCATTAATTGCAGGGAGATAATTTTTTCAAACCTGACATGCTTGCTTGTGTCTACCAAGATCAAAAGTTGTAGAAGTCATTCCAGCCATTATTAGCTGTTCTCATGTTGGATATAGCATTGGAACATGTTGGCCCTATCTATCATCTTTGAGCATGTGAAGAAGAATGGTTTTGCCTGCATTGTCCACACCCAAGAATACAAATTTTCCAAATTTCTTATAGAGTCCTAGGAACTGAAGCACACTGCTGAAGCCATTGTAGATCCACTCAAAGATAAAAGACAGTATTCATACTTCCTACGGTCTGAAGGGCTCCTCCAGCAATGGTGGGTGGTCCGGGCCATCCCTCAGAGCAGACCGCAAATATTTTCGGATGTGAAAACCAACGTACCCTTTAGAGGTAAGAAACATACTTTAAACAATTTATTTTATGTTAttttatttattgtattttagttctaggatacatgtgtgggatgtgcaggtttgtcacataag-taaacatgtgtcatagtggtttgccgcacctgtcaatccatcacctatatattaagcccagcatccattagctatatttcctgatgttttccctcccctctccatctctggacaggccccattgtatgttgttctcctccctgtgtccatgttttctcgttgttcagctc-ccact-tacgagtgaaaacatgcagtgtttggttttct--------gttcctgcataatggtttctagctccatccatttccctgcaaaggacatgatcttgttcTAAAGGTACTT---AAAAAGTACTTT
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            338833   40 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1781244   45 -   2232465 I

a score=12732.000000
s hg38.chr6_GL000254v2_alt    343411 2 +   4827813 AT
s panTro5.chr6              29318153 2 + 175400573 AT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29564134 2 + 173848474 AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5361461 2 +   6154872 AT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74373530 2 + 122973662 AT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29524105 2 + 172585720 AT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29185217 2 - 170955103 AT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2177749 2 -   2996164 AT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2058204 2 -   2157725 AT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28488719 2 -  71996105 AT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2195890 2 +   2316924 AT
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171570306 2 - 171630274 AT
i calJac3.chr4             C 0 C 0
s dasNov3.JH570037            338873 2 -    859332 AC
i dasNov3.JH570037         I 40 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1781244 45 -   2232465 I

a score=1453700.000000
s hg38.chr6_GL000254v2_alt    343413 223 +   4827813 AGGGTTGCCACTCACTCTATAAAGCTGTGAAACTTTGTTCTCTGTACAGATAATA-----GAGTTGAAATTTCTTGGTAAGGGTCATTATAGCAATTCCTTAGTGGGTATGCTTCCCTCTAACTTC--CTTGCCATAATAAAATGAAATGATAAATTTTGGCACCT--------GTTATTTATAATGGACTCAGGTCTAAGAGAAGCCAAGGAAACTGAATCTGCCTTAACAATTTTA
s panTro5.chr6              29318155 223 + 175400573 AGGGTTGCCACTCACTCTATAAAGCTGTGAAACTTTGTTCTCTGTACAGATAATA-----GAGTTGAAATTTCTTGGTAAGGGTCATTATAGCAATTCCTTAGTGGGTATGCTTCCCTCTAACTTC--CTTGCCATAATAAAATGAAATGATAAATTTTGGCACCT--------GTTATTTATAATGGACTCAGGTCTAAGAGAAGCCAAGGAAACTGAATCTGCCTTAACAATTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29564136 223 + 173848474 AGGGTTGCCACTCACTCTATAAAGCTGTGAAACTTTGTTCTCTGTACAGATAATA-----GAGTTGAAATTTCTTGGTAAGGGTCATTATAGCAATTCCTTAGTGGGTATGCTTCCCTCTAACTTC--CTTGCCATAATAAAATGAAATGATAAATTTTGGCACCT--------GTTATTTATAATGGACTCAGGTCTAAGAGAAGCCAAGGAAACTGAATCTGCCTTAACAATTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5361463 222 +   6154872 AGGGTTGCCACTCACTCTATAAAGCTATGAAACTTTGTTCTCTGTACAGATAATA-----CAGTTGAAATTTCTCGGTAA-GGTCATTATAGCAATTCCTTAGTGGGTATGCTTCCCTCTAACTTC--CTTGCCATAATAAAATGAAATGATAAATTTTGGCACCT--------GTTATTTATAATGGACTCAGGACTAAGAGAAGCCAAGGAAACTGAATCTGTCTCAACAATTTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74373532 223 + 122973662 AGGGTTGCCACTCACTCTATAAAGCTGTGAAACTTTGTTCCCCGTACAGATAATA-----CAGTTGAAATGTCTTGGTAAGGGCCATTATAGCAATTCCTTAGTGGGTATGCTTCCCTCTAACTTC--CTTGCCGTAATAAAATGAAACGACAAATTTTGGAACCT--------GTTATTTATAATGGACTCAGGATTAAGAGATGCCAAGGAAACTGAATCTGCCTCAACAATTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29524107 223 + 172585720 AGGGTTGTCACTTACTGTATAAAGCTGTGAAACTTTGTTCCCCATACAGATAATA-----cagttgaaatttcttggtaagggtcattatagtaattccttagtgggtatgcttccctctaacttc--cttgccATAATAAAATGAAATGATAAATTttggcacct--------gttatttataatggactcaggactaagagactCCAAGGAAACTGAATCTGCCTCAACAATTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29185219 223 - 170955103 AGGGTTGTCACTCACTGTATAAAGCTGTGAAACTTTGTTCCCCATACAGATAATA-----cagttgaaatttcttggtaagggtcattatagtaattccttagtgggtatgcttccctctaacttc--cttgccATAATAAAATGAAATGATAAATTTTGGCACCT--------GTTATTTATAATGGACTCAGGACTAAGAGACTCCAAGGAAACTGAATCTGCCTCAACAATTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2177751 223 -   2996164 AGGGTTGTCACTCACTGTATAAAGCTGTGAAACTTTGTTCCCCATACAGATAATA-----cagttgaaatttcttggtaagggtcattatagtaattccttagtgggtatgcttccctctaacttc--cttgccATAATAAAATGAAATGATAAATTttggcacct--------gttatttataatggactcaggactaagagactCCAAGGAAACTGAATCTGCCTCAACAATTTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2058206 223 -   2157725 AGGCTTGTCACTCACTGTATAAAGCTGTGAAACTTTGTTCCCCATACAGATAATA-----CAGTTGCAATTTCTTGGTAAGGGTCATTATAGTAATTCCTTAGTGGGTATGCTTCCCTCTAACTTC--CTTGCCATAATAAAATGAAATGATAAATTttggcacct--------gttatttataatggactcaggactaagagactCCAAGGAAACTGAATCTGCCTCAACAATTTTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28488721 223 -  71996105 AGGGTCGTCACTCACTGTATAAAGCTGTGAAACTTTGTTCCCCATACAGATAATA-----cagttgaaatttcttggtaagggtcattatagtaattccttagtgggtatgcttccctctaacttc--cttgccATAATAAAATGAAATGACAAATTttggcacct--------gttatttataatgaactcaggactaagagactCCAAGGAAACTGAATCTGCCTCAACAATTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2195892 223 +   2316924 AGGCTTGTCACTCACTGTATAAAGCTGTGAAACTTTGTTCCCCATGCAGATAATA-----CAGTTGAAATTTCTTGGTAAGGGTCATTATAGCAATTCCTTAGTGGGTATGCTTCCCTCTAACTTC--CTTGCCATAATAAAACGAAACGATAAGTTttggcacct--------gttatttataatggactcaggactaagagactCCAAGGAAACTGAATCTGCCTCAACAATTTTA
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171570308 223 - 171630274 AGGGTTGTCTCTCGCTCTGTAAATCTGTGAAACTTTGTTCCCCATACAGATAATA-----TAGCTGACATTTCTTGGTAAGGGTTATTATAGCAATTCCTTAGTGGGTATTCTTCCCTCGAACTTT--CATGCCATAATAAAATGAGACAATAAATGTTGGCACCT--------GTTATTTATAATGGACTCAGTACTAAGAGACTCCAAAAAAACTGAATTCACCTTAACAATTTTA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1781289 225 -   2232465 AGGATTGTCATTCTCCTTATAAAGCTATGGGACTCTGTTCTGTATCTAGGCTGTAAACCTCAGTGGAAACTTCTTGGCAAGAAATGCCACAGAAATTCCCATGTGGGTATACTTCCCTTTAATGTT--TTTATCATAATAAAGTGAAACGGTAAATTTAGGCACTT--------GTGG---AAAATGGACTCAGGATTAAAAGATTTCTAGAAAATTCAACTTATCTCAACAATTTCa
i otoGar3.GL873742         I 45 I 298
s dasNov3.JH570037            338875 232 -    859332 AGGGTTGTCACTCCTTATAAACAGCTGTGGGACTTCATCCTCTGTGTAGATAATTGACCTCAGTGGAAATTTCTTGGCAAGCAATACCAGAGAAGTCCCCCAGTGAGTTTTCTACTTCCAATCTTCTTTTTGCCTCAGTAAAATGAAA---TTAATTTTGGTATTTTCCACACAGTGTTGAATGATGAGCTCAAGAATAA-AGGGTCTTAGGAAAC--AACCTCCTTAAACAATTTAA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I

a score=-9051.000000
s hg38.chr6_GL000254v2_alt    343636 2 +   4827813 TA
s panTro5.chr6              29318378 2 + 175400573 TA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29564359 2 + 173848474 TA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5361685 2 +   6154872 TA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74373755 2 + 122973662 TA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29524330 1 + 172585720 T-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29185442 1 - 170955103 T-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2177974 1 -   2996164 T-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2058429 1 -   2157725 T-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28488944 1 -  71996105 T-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2196115 1 +   2316924 T-
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171570531 2 - 171630274 TA
i calJac3.chr4             C 0 C 0
s dasNov3.JH570037            339107 2 -    859332 TA
i dasNov3.JH570037         C 0 I 1
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1781514 298 -   2232465 I

a score=239238.000000
s hg38.chr6_GL000254v2_alt    343638 34 +   4827813 AAAATTTCCTTGGATCACAAGGAGGAAATTAAGA
s panTro5.chr6              29318380 34 + 175400573 AAAATTTCCTTGGATCACAAGGGGGAAATTAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29564361 34 + 173848474 AAAATTTCCTTGGATCACAAGGGGGAAATTAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5361687 34 +   6154872 AAAATTTCCTTGGATCACAAGGGGGAAATTAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74373757 34 + 122973662 AAAATTTCCTTGGATCACAAGGGGGAAATTAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29524331 33 + 172585720 -AAATTTCCTTGGATCACAAGGGGGAAATTAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29185443 33 - 170955103 -AAATTTCCTTGGATCACAAGGGGGAAATTAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2177975 33 -   2996164 -AAATTTCCTTGGATCACAAGGGGGAAATTAAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2058430 33 -   2157725 -AAATTTCCTTGGATCACAAGGGGGAAATTAAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28488945 33 -  71996105 -AAATTTCCTTGGATCACAAGGGGGAAATTAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2196116 33 +   2316924 -AAATTTCCTTGGATCACAAGGAGGAAATTAAGA
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171570533 33 - 171630274 ATAATTCCCTTAGGTCAC-AGGTGGAAATTAAGA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1781812 34 -   2232465 AAAATATCCTTGGATCACCAAGAAAAAATTAAGA
i otoGar3.GL873742         I 298 I 4
s dasNov3.JH570037            339110 34 -    859332 AAAATTCCCTTGGATCACCAGGGAATATTTAAGA
i dasNov3.JH570037         I 1 C 0
e canFam3.chr35             26123994 2185 +  26524999 I

a score=6120.000000
s hg38.chr6_GL000254v2_alt    343672 2 +   4827813 TT-
s panTro5.chr6              29318414 2 + 175400573 TT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29564395 2 + 173848474 TT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5361721 2 +   6154872 TT-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74373791 2 + 122973662 TT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29524364 2 + 172585720 TT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29185476 2 - 170955103 TT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2178008 2 -   2996164 TT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2058463 2 -   2157725 TT-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28488978 2 -  71996105 TT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2196149 2 +   2316924 TT-
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171570566 2 - 171630274 TT-
i calJac3.chr4             C 0 I 160
s dasNov3.JH570037            339144 2 -    859332 -CA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1781846 4 -   2232465 I

a score=1214904.000000
s hg38.chr6_GL000254v2_alt    343674 249 +   4827813 ATTATTTTAGGTGCCAAGATCTAATTTTCTTTTAGTTA---------------------TAGTTTTTCTCAAGATATTATTTCTTTAGATTTCTGCTACCATAGAGCCATCATAATCCTAGTTCCACA-TACAGACAAAAGAA----------------------------------GTCTTCAATAATTTCTTCCACAATAACCCAACACAGTATAGACTTTTTACCTTCCATTGACTACATTAAAGTTCCTCATTTTATTTAAACCATAAAAACATTGTGTCAAGAAGATATTAACATACATT
s panTro5.chr6              29318416 249 + 175400573 ATTATTTTAGGTGCCAAGATCTAATTTTCTTTTATTTA---------------------TAGTTTTTCTCAAGATATTATTTCTTTAGATTTCTGCTATCATAGAGCCATAATAATCCTAGTTCCACA-TACAGACAAAAGAA----------------------------------GTCTTCAATAATTTCTTCCACAATAACCCAACACAGTATAGACTTTTTACCTTCCATTGACTACATTAAAGTTCCTCATTTTATTTAAACCATAAAAACATTGTGTCAAGAAGATATTAACATACATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29564397 249 + 173848474 ATTATTTTAGGTGCCAAGATCTAATTTTCTTTTATTTA---------------------TAGTTTTTCTCAAGATATTATTTCTTTAGATTTCTGCTATCATAGAGCCATAATAATCCTAGTTCCACA-TACAGACAAAAGAA----------------------------------GTCTTCAATAATTTCTTCCACAATAACCCAACACAGTATAGACTTTTTACCTTCCATTGACTACATTAAAGTTCCTCATTTTATTTAAACCATAAAAACATTGTGTCAAGAAGATATTAACATACATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5361723 249 +   6154872 ATTATTTTAGGTGCCAAGATCTAATTTTCTTTTATTTA---------------------TAGTTTTTCTCAAGATATTATTTCTTTAGATTTCTGCTACCATAGAGCCATCATAATCCTAGTTCTACA-TACAGACAAAAGAA----------------------------------GTCTTCAATAATTTCTTCCACAATAGTCCAACACAGTATAGACTTTTTACCTTCCATTGACTACATTAAAGTTCCTCATTTTATTTAAACCATAAAAACATTGTGTCAAGAAAATATTAACATACATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74373793 267 + 122973662 ATTATTTTAGGTGCCAAGATCCAattttcttttatttatatttatattttatttatatttatttTTTCTCCAGATATTATTTCTTTAGATTTCTGCTACAATAGAGCCATCATAATCCTAGTTCTATA-TACAGACAAAAGAA----------------------------------GTCTTCAATAATTTCTTCCACAATAGCCCAACACAGTATAGACTTTTTACTTTCCATTGACTACATTGAAGT---TCATTTTATTTAAACCATAAAAACATTGTGTCAAGAAGATATTAACATACATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29524366 243 + 172585720 ATTATTTTGGGTGCCAAGATCCAATTTTCTTTTATTTA---------------------TAG-TTTTCTCAAGATATTATTTCTTTAGATTTCTGCTACAATAGAGCCATCATAATCCTAGTTCTACA-TACAGACAAAAGAA----------------------------------GTCTTCAGTAATTTCTTCCACAATATCCCAACACAGTATGGACTTTTTACCTACCATTGACTA-----AAGTTCCTCATTTTATTTAAACCATAAAAACATTGTGTCAAGAAGATATTAACATACATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29185478 243 - 170955103 ATTATTTTGGGTGCCAAGATCCAATTTTCTTTTATTTA---------------------TAG-TTTTCTCAAGATATTATTTCTTTAGATTTCTGCTACAATAGAGCCATCATAATCCTAGTTCTACA-TACAGACAAAAGAA----------------------------------GTCTTCAGTAATTTCTTCCACAATATCCCAACACAGTATGGACTTTTTACCTACCATTGACTA-----AAGTTCCTCATTTTATTTAAACCATAAAAACATTGTGTCAAGAAGATATTAACATACATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2178010 243 -   2996164 ATTATTTTGGGTGCCAAGATCCAATTTTCTTTTATTTA---------------------TAG-TTTTCTCAAGATATTATTTCTTTAGATTTCTGCTACAATAGAGCCATCATAATCCTAGTTCTACA-TACAGACAAAAGAA----------------------------------GTCTTCAGTAGTTTCTTCCACAATATCCCAACACAGTATGGACTTTTTACCTACCATTGACTA-----AAGTTCCTCATTTTATTTAAACCATAAAAACATTGTCTCAAGAAGATATTAACATACATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2058465 243 -   2157725 ATTATTTTGGGTGCCAAGATCCAATTTTCTTTTATTTA---------------------TAG-TTTTCTCAAGATATTATTTCTTTAGATTTCTGCTACAATAGAGCCATCATAATCCTAGTTCTACA-TACAGACAAAAGAA----------------------------------GTCTTCAGTAATTTCTTCCACAATATCCCAACACAGTATGGACTTTTTACCTACCATTGACTA-----AAGTTCCTCATTTTATTTAAACCATAAAAACATTGTGTCAAGAAGATATTAACATACATT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28488980 243 -  71996105 ATTATCTTGGGTGCCAAGATCCAATTTTCTTTTATTTA---------------------TAG-TTTTCTCAAGATATTATTTCTTTAGATTTCTGCTACAATAGAGCCATCATAATCCTAGTTCTACA-TACAGACAAAAGAA----------------------------------GTCTTCAGTAATTTCTTCCACAATAGCCCAACACGGTATGGACTTTTTATCTACCATTGACTA-----AAGTTCCTCATTTTATTTAAACCATAAAAACATTGTGTCAAGAAGATATTAACGTACATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2196151 238 +   2316924 ATTATTTTGGGTGCCAAGATCCAA-----TTTTATTTA---------------------TAG-TTTTCTCAAGATATTATTTCTTTAGATTTCTGCTACAATAGAGCCATCATAATCCTAGTTCTACA-TACAGACAAAAGAA----------------------------------GTCTTCAGTAATTTCTTCCACAATAGCCCAACACAGTATGGACTTTTTACCTACCATTGACTA-----AAGTTCCTCATTTTATTTAAACCATAAAAACATTGTGTCAAGAAGATGTTAACATACATT
i manLeu1.NW_012104165v1   C 0 C 0
s dasNov3.JH570037            339146 272 -    859332 AACATTTTTCGTGTCAAGATCCAATTTTCTTTTCTTTA---------------------TGT-TTTTCTTGAGACATCGTTTCTTGAGACTCCTGCTAAAATAAAAGTAGAATAATCCTACTTCTACCTTAGAAATAGAAGAGGCAACCACCTTCTGATATGATATTTAAGGCTCTTGTCTTCAAATATTTCCTCCGCAA-----CAGCACAGTATAGCCATTTTAAATGCCCTAGCTTT----GGAGTTCTGCATTTGGTTTAAACAACAGAAACACTG--TTGAGATGAAACTAATACACACT
i dasNov3.JH570037         C 0 I 8121
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1781846   4 -   2232465 I
e calJac3.chr4             171570568 160 - 171630274 I

a score=1802153.000000
s hg38.chr6_GL000254v2_alt    343923 381 +   4827813 AATGTTATTAAAACATGATTAAAAATCATGGAATCTGGAATTTTGAAAATATGGGTCCTGAAAACTTTTGGCCATGGGCTTGTTTTTAAAGTAATTGCTTTTTTCACCCATGGTTCACAATTAGCAGCAG--ATCTAGCAATCTGGAATCCTTCTAGCCAAGTTCACACTGATCATCTCAGGCTTGTTCTTTGCTCCCACTTTTGTTTTCATCATTTGCTGCATTCTATAACTATATTCAGCTTCTGGTCCTTTATTTTTTAAAACAATATTtaattgacaataaagattgtatatattcaaggtgtg---------cagtgtgatgatttgatatacgtatacCCTTTGTTTTTATTTCTTTTCTGTCTGAATCCACTCCCACCCAATTCA
s panTro5.chr6              29318665 380 + 175400573 AATGTTATTTAAACATGATTAAAAATCATGGAATCTGGAATTTTGAAAATATGGGTCCTGAAAACTTTTGGCCATGGGCTTGTTTTTAAAGTAATTGCTTTTTTCACCCATGCTTCACAATTAGCAGCAG--ATCTAGCAATCTGG-ATCCTTCTAGCCAAGTTCACACCGATCATCTCAGGCTTGTTCTTTGCTCCCACTTTTGTTTTCATCATTTGCTGCATTCTATAACTATATTCAGCTTCTGGTCCTTTATTTTTTAAAACAATATTtaattgacaataaagattgtatatattcaaggtgtg---------cagtgtgatgatttgatatacgtatacCCTTTGTTTTTATTTCTTTTCTGTCTAAATCCACTCCCACCCAATTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29564646 380 + 173848474 AATGTTATTTAAACATGATTAAAAATCATGGAATCTGGAATTTTGAAAATATGGGTCCTGAAAACTTTTGGCCATGGGCTTGTTTTTAAAGTAATTGCTTTTTTCACCCATGCTTCACAATTAGCAGCAG--ATCTAGCAATCTGG-ATCCTTCTAGCCAAGTTCACACCGATCATCTCAGGCTTGTTCTTTGCTCCCACTTTTGTTTTCATCATTTGCTGCATTCTATAACTATATTCAGCTTCTGGTCCTTTATTTTTTAAAACAATATTtaattgacaataaagattgtatatattcaaggtgtg---------cagtgtgatgatttgatatacgtatacCCTTTGTTTTTATTTCTTTTCTGTCTAAATCCACTCCCACCCAATTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5361972 380 +   6154872 AATGTTATTTAAACATGATTAAAAATCATGGAATCTGGAATTTTGAAAATATGGGTCCTGAAAACTTTTGGCCATGGGCTTGTTTTTAAAGTAATTGCTTTTTTCACCCATGCTTCACAATTAGCAGCAG--ATCTAGCAATCTGGAATCCTTCTAGCCAAGTTCACACCGATCATCTCAGGCTTGTTCTTTGCTCCCACTTTTGTTTTCATCATTTGCTGCATTCTATAACTATATTCAGCTTCTGGTCCTTTA-TTTTTAAAACAATATTtaattgacaataaagattgtatatattcaaggtgta---------cagtgtgatgatttgatatacgtatacCCTTTGTTTTTATTTCTTTTCTGTCTAAATCCACTCCCATCCAATTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74374060 383 + 122973662 AATGTTATTTAAACATGATTAAAAATCATGGAATCTAGAATTTTGAAAATATGGGTCCTGAAAACTTTTGGCCATGGGCTTGTTTTTAAAGTAATTGCTTTTTTCACCCGTGCTTCACAATTAGCAGCAGATATCTAACAATCTGGAATCCTTCTAGCCAAGTTCACACCGATCATCTCAGGCTTGTTCTTCGTTCCCACTTTTGTTTTCATCATTTGCTGCATTCTGTAACTATATTCAGCTTCTGGTCCTTTATTTTGTAAAACAATATTtaattgacaataaagattgcatatattcaaggtgta---------cagcgtgatgatttgatatacatatacCCTTTGCTTTTATTTCTTTTCTGTCTAAATCCACTCCCACCCAATTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29524609 378 + 172585720 AATGTTATTTAAACATGATTAAAAATCATGGAATCTAGAACTTTGAAAATATGAGTCCAGAATACTTTTGGCCATGGGCTTGTTTTTAAAGTAATTGCTTTTTTCACCCATGCGTCACAATTAGCAGCAG--ATCTAACAATCTGGAATCCTTCTAGCCAAGTTCACACTGATCATCTCAGGCTTGTTCTTCGTTCCCACTTTTGTTTTCATCATTTGCTGCGTTCTATAACTATATTCAGCTTCTGGTCCTTTATTTTTTAAAACAATATTtaatttacaataaagattgtatatattcaaggtgta---------cagtg---tgatttgatatatgtatacCCTTTGTTTTTATTTCTTTTCTCTGTAAATCCACTACCACCCAATTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29185721 378 - 170955103 AATGTTATTTAAACATGATTAAAAATCATGGAATCTAGAACTTTGAAAATATGGGTCCAGAATACTTTTGGCCATGGGCTTGTTTTTAAAGTAATTGCTTTTTTCACCCATGCGTCACAATTAGCAGCAG--ATCTAACAATCTGGAATCCTTCTAGCCAAGTTCACACTGATCATCTCAGGCTTGTTCTTCGTTCCCACTTTTGTTTTCATCATTTGCTGCGTTCTATAACTATATTCAGCTTCTGGTCCTTTATTTTTTAAAACAATATTtaatttacaataaagattgtatatattcaaggtgta---------cagtg---tgatttgatatatgtatacCCTTTGTTTTTATTTCTTTTCTCTGTAAATCCACTACCACCCAATTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2178253 378 -   2996164 AATGTTATTTAAACATGATTAAAAATCATGGAATCTAGAACTTTGAAAATATGGGTCCAGAATACTTTTGGCCATGGGCTTGTTTTTAAAGTAATTGCTTTTTTCACCCATGCGTCACAATTAGCAGCAG--ATCTAACAATCTGGAATCCTTCTAGCCAAGTTCACACTGATCATCTCAGGCTTGTTCTTCGTTCCCACTTTTGTTTTCATCATTTGCTGCGTTCTATAACTATATTCAGCTTCTGGTCCTTTATTTTTTAAAACAATATTtaatttacaataaagattgtatatattcaaggtgta---------cagtg---tgatttgatatatgtatacCCTTTGTTTTTATTTCTTTTCTCTGTAAATCCACTACCACCAAATTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2058708 387 -   2157725 AATGTTATTTAAACATGATTAAAAATCATGGAATCTAGAACTTTGAAAATATGGGTCCAGAAAACTTTTGGCCATGGGCTTGTTTTTAAAGTAATTGCTTTTTTCACCCATGCGTCACAATTAGCAGCAG--ATCTAACAATCTGGAATCCTTCTAGCCAAGTTCACACTGATCATCTCAGGCTTGTTCTTCGTTCCCACTTTTGTTTTCATCATTTGCTGCGTTCTATAACTATATTCAGCTTCTGGTCCTTTATTTTTTAAAACAATATTtaatttacaataaagattgtatatattcaaggtgtacagtgtgatcagtg---tgatttgatatatgtatacTCTTTGTTTTTATTTCTTTTCTCTGTAAATCCACTACCACCCAATTCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28489223 381 -  71996105 AATGTTATTTAAACATGATTAAAAATCATGGAGTCTAGAACTTTGAAAATATCGGTCCAGAAAACTTCTGGCCATGGGCTTGTTTTTAAAGTAATTGCTTTTTTCACCCATACGTCACAATTAGCAGCAG--ATCTAACAATCTGGAATCCTTCTAGCCAAGTTCACACCAATCATCTCAGGCTTGTTCTTCGTTCCCACTTTTGTTTTCATCATTTGTTGCGTTCTATAACTATATTCAGCTTCTGGTCCTTTATTGTTTAAAACAATAtttaattgacaataaagattgtgtatattcaaggtgta---------cagtgtgatgatttgatatatgtatacgctttgTTTTTATTTCTTTTCTGTGTAAATCCACTCCCACCCAATTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2196389 378 +   2316924 AATGTTATTTAAACATGATTAAAAATCATGGAATCTAGAACTTTGAAAATATGGGTCCAGAAAACTTTTGGCCATGGGCTTGTTTTTAAAGTAATTGCTTTTTTCACCCATGCGTCACAATTAGCAGCAG--ATCTAACAATCTGGAATCCTTCTAGCCAAGTTCACACTGATCATCTCAGGCTTGTTCTTCGTTCCCACTTTTGTTTTCATCATTTGCTGCGTTCTATAACTATATTCAGCTTCTGGTCCTTTATTTTTTAAAACAATATTtaatttacaataaagattgtatatattcaaggtgta---------cagtg---tgatttgatatatgtatacTCTTTGTTTTTATTTCTTTTCTCTGTAAATCCACTACCACCCAATTCA
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1781846   4 -   2232465 I
e calJac3.chr4             171570568 160 - 171630274 I

a score=149369.000000
s hg38.chr6_GL000254v2_alt    344304 49 +   4827813 TTATTGACATTAATGAATACATTTGACTTATTCTCGGTAA-CCCTCAGCT
s gorGor5.CYUI01015250v1     5362352 50 +   6154872 TTATTGACATTAATGAATACATTTGACTTATTCTCTGTAACCCCTCAGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74374443 49 + 122973662 TTATTGAAGCTAATAAATACATTTGACTTATTCTCTGTAA-CCCTCAGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29524987 49 + 172585720 TTATTGAAGCTAATGAATACATTTGACTTATTCTCTGTAA-CCCTCAGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29186099 49 - 170955103 TTATTGAAGCTAATGAATACATTTGACTTATTCTCTGTAA-CCCTCAGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2178631 49 -   2996164 TTATTGAAGCTAATGAATACATTTGACTTATTCTCTGTAA-CCCTCAGCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2059095 49 -   2157725 TTATTGAAGCTAATGAATACATTTGACTTATTCTCTGTAA-CCCTCAGCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28489604 49 -  71996105 TTATTGAAGCTGATGAATACATTTGACTTATTCTCTGTAA-CCCGCAGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2196767 49 +   2316924 TTATTGAAGCTAATGAATACATTTGATTTATTCTCTGTAA-CCCTCAGCT
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1781846  4 -   2232465 I
e calJac3.chr4             171570568 160 - 171630274 I
e panPan2.chr6              29565026  0 + 173848474 C
e panTro5.chr6              29319045  0 + 175400573 C

a score=134318.000000
s hg38.chr6_GL000254v2_alt    344353 52 +   4827813 TTATGTAGGGATACAGtatatatatatatatatTTTTTCCCTATT-ATAGCTT
s gorGor5.CYUI01015250v1     5362402 51 +   6154872 TTATGTAGGGATACGGtatatatatatatata-tTTTTCCCTATT-ATAGCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74374492 42 + 122973662 TTATGTAGGGATACAGTATATATA-----------TTTACCTGTTAATAGCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29525036 41 + 172585720 TTATGTAGGGATGCAGTATATATA-----------TTTACCTGTT-ATAGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29186148 41 - 170955103 TTATGTAGGGATGCAGTATATATA-----------TTTACCTGTT-ATAGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2178680 41 -   2996164 TTATGTAGGGATGCAGTATATATA-----------TTTACCTGTT-ATAGCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2059144 41 -   2157725 TTATGTAGGGATGCAGTATATATA-----------TTTACCTGTT-ATAGCTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28489653 41 -  71996105 TTATGTAGGGATGCAGTATATATA-----------TTTACCTGTT-GTAGCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2196816 41 +   2316924 TTATGTAGGGATGCAGTATATATA-----------TTTACCTGTT-ATAGCTT
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1781850 39 -   2232465 TTATGTAGAGATACA--ATATATA-----------TTTACCTATT-ATATCTT
i otoGar3.GL873742         I 4 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570568 160 - 171630274 I
e panPan2.chr6              29565026  0 + 173848474 C
e panTro5.chr6              29319045  0 + 175400573 C

a score=206017.000000
s hg38.chr6_GL000254v2_alt    344405 40 +   4827813 TAATTTTAAAACATGATCCTTTCTGATGGTATTAGTTTCC
s panTro5.chr6              29319045 40 + 175400573 TAATTTTAAAACATGATCCTTTTTGATGGTATTCGTTTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29565026 40 + 173848474 TAATTTTAAAACATGATCCTTTTTGATGGTATTAGTTTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5362453 40 +   6154872 TAATTTTAAAACATTATCCTTTTTGATGGTATTAGTTTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74374534 40 + 122973662 TAATTTTAAAACATTATACTTTTTGATTGTATTAGTTTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29525077 40 + 172585720 TAATTTTAAAACATTATCCTTTTTGATTGTATTAGTTTCC
i rheMac8.chr4             C 0 I 13
s macFas5.chr4              29186189 40 - 170955103 TAATTTTAAAACATTATCCTTTTTGATTGTATTAGTTTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2178721 40 -   2996164 TAATTTTAAAACATTATCCTTTTTGATTATATTAGTTTCC
i macNem1.NW_012011356v1   C 0 I 13
s cerAty1.NW_012001495v1     2059185 40 -   2157725 TAATTTTAAAACATTATCCTTTTTGATTGTATTAGTTTCC
i cerAty1.NW_012001495v1   C 0 I 13
s chlSab2.chr17             28489694 40 -  71996105 TAATTTTAAAACATTATCCTTTTTGATTGCATTAGTTTCC
i chlSab2.chr17            C 0 I 13
s manLeu1.NW_012104165v1     2196857 40 +   2316924 TAATTTTAAAACATTATCCTTTTTGATTGTATTAGTTTCC
i manLeu1.NW_012104165v1   C 0 I 13
s otoGar3.GL873742           1781889 40 -   2232465 TAAAGTTAAAAAATTATCTTTCTTAATTATATTTGTTTTA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570568 160 - 171630274 I

a score=11523.000000
s hg38.chr6_GL000254v2_alt    344445 13 +   4827813 TT-ACATCATCCTG
s panTro5.chr6              29319085 13 + 175400573 TT-ACGTCATCCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29565066 13 + 173848474 TT-ACGTCATCCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5362493 14 +   6154872 TTAACGTCATCCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74374574 13 + 122973662 TT-GTGTCATCATA
i nomLeu3.chr1a            C 0 I 1
s macFas5.chr4              29186229 12 - 170955103 -T-GTGTCATCATA
i macFas5.chr4             C 0 I 1
s otoGar3.GL873742           1781929 13 -   2232465 CT-GTGCTTTCATG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570568 160 - 171630274 I
e manLeu1.NW_012104165v1     2196897 13 +   2316924 I
e chlSab2.chr17             28489734 13 -  71996105 I
e cerAty1.NW_012001495v1     2059225 13 -   2157725 I
e macNem1.NW_012011356v1     2178761 13 -   2996164 I
e rheMac8.chr4              29525117 13 + 172585720 I

a score=309716.000000
s hg38.chr6_GL000254v2_alt    344458 58 +   4827813 -CTGGTGTGGAAGTGAAAAGTGAATGATAAATTCTTACTACACAGTTAATCTAGTTAAT
s panTro5.chr6              29319098 58 + 175400573 -CTGGTGTGGAAGTGAAAAGTGAATGATAAATTCTTACTACACAGTTAATCTAGTTAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29565079 58 + 173848474 -CTGGTGTGGAAGTGAAAAGTGAATGATAAATTCTTACTACACAGTTAATCTAGTTAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5362507 58 +   6154872 -CTGGTGTGGAAATGAAAAGTGAATGATAAATTCTTACTACATAGTTAATCTAGTTAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74374588 58 + 122973662 -CTGGTGTGGAAATGAAAAGTGAATAATAAATTCTCACTACACAGTTAATCTGGTTAAT
i nomLeu3.chr1a            I 1 I 1764
s rheMac8.chr4              29525130 58 + 172585720 -CCGGTATGGAAATGAAAAGCGAATAATAAATTCTTACTACACAGTTAATCCAGTTAAT
i rheMac8.chr4             I 13 C 0
s macFas5.chr4              29186242 58 - 170955103 -CTGGTATGGAAATGAAAAGCGAATAATAAATTCTTACTACACAGTTAATCCAGTTAAT
i macFas5.chr4             I 1 I 1882
s macNem1.NW_012011356v1     2178774 58 -   2996164 -CTGGTATGGAAATGAAAAGCGAATAATAAATTCTTACTACACAGTTAATCCAGTTAAT
i macNem1.NW_012011356v1   I 13 C 0
s cerAty1.NW_012001495v1     2059238 58 -   2157725 -CTGGTATGGAAATGAAAAGCGAATAATAAATTTTTACTACACAGTTAATCCAGTTAAT
i cerAty1.NW_012001495v1   I 13 C 0
s chlSab2.chr17             28489747 58 -  71996105 -CTGGTGTGGGAATGAAAAGCGAATAATAAATTCTTACTACACAGTTAATCCAGTTAAT
i chlSab2.chr17            I 13 C 0
s manLeu1.NW_012104165v1     2196910 58 +   2316924 -CTGGTATGGAAATGAAAAGCGAATAATAAATTTTTACTACACAGTTAATCCAGTTAAT
i manLeu1.NW_012104165v1   I 13 C 0
s otoGar3.GL873742           1781942 58 -   2232465 CCTGGGGTAGAAATGAAGAGTAAATGAGAAATTCTCACTACACATTTAATCCAG-TAAT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570568 160 - 171630274 I

a score=18612.000000
s hg38.chr6_GL000254v2_alt    344516 3 +   4827813 gaa
s panTro5.chr6              29319156 3 + 175400573 gaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29565137 3 + 173848474 gaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5362565 3 +   6154872 gaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74376410 3 + 122973662 gaa
i nomLeu3.chr1a            I 1764 C 0
s rheMac8.chr4              29525188 3 + 172585720 GAA
i rheMac8.chr4             C 0 I 1884
s macFas5.chr4              29188182 3 - 170955103 gaa
i macFas5.chr4             I 1882 C 0
s macNem1.NW_012011356v1     2178832 3 -   2996164 GAA
i macNem1.NW_012011356v1   C 0 I 1881
s cerAty1.NW_012001495v1     2059296 3 -   2157725 GAA
i cerAty1.NW_012001495v1   C 0 I 1882
s chlSab2.chr17             28489805 3 -  71996105 GAA
i chlSab2.chr17            C 0 I 1859
s manLeu1.NW_012104165v1     2196968 3 +   2316924 GAA
i manLeu1.NW_012104165v1   C 0 I 9357
s otoGar3.GL873742           1782000 3 -   2232465 GAA
i otoGar3.GL873742         C 0 I 1781
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570568 160 - 171630274 I

a score=5383.000000
s hg38.chr6_GL000254v2_alt    344519 5 +   4827813 actat
s panTro5.chr6              29319159 5 + 175400573 actat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29565140 5 + 173848474 actat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5362568 5 +   6154872 actat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74376413 5 + 122973662 accat
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29188185 5 - 170955103 accac
i macFas5.chr4             C 0 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1782003 1781 -   2232465 I
e calJac3.chr4             171570568 160 - 171630274 I
e manLeu1.NW_012104165v1     2196971 9357 +   2316924 I
e chlSab2.chr17             28489808 1859 -  71996105 I
e cerAty1.NW_012001495v1     2059299 1882 -   2157725 I
e macNem1.NW_012011356v1     2178835 1881 -   2996164 I
e rheMac8.chr4              29525191 1884 + 172585720 I

a score=1216507.000000
s hg38.chr6_GL000254v2_alt    344524 324 +   4827813 cattctcagcaaactaacccaagaacagaaaaccaaacactgcatgttctcactcataagtgggagttaaacaatgagaacacatggaacagggagaggaacatcccacactggggcctgtcagggatggaggactgggggagggatagcattaggagaaatacctaatgtagatgacaggttggtgggtgcagcaaaccaccatggcacatgtatacctatg-taacaaaccttcacatcctgcacatgtaccccagaa---aaactgtaataataaaaaaaGGTAAAATAGCGATataaaatagaaatttatgagtatatactgat
s panTro5.chr6              29319164 324 + 175400573 cattctcagcaaactaacacaagaacagaaaaccaaacactgcatgttctcactcataagtgggagttaaacaatgagaacacatggaacagggagaggaacatcccacactggggcctgtcaggggtggaggacttggggagggatagcattaggagaaatacctaatgtagatgacgggttggtgggtgcagcaaaccaccatggcacatgtatacctatg-taacaaaccttcacgtcctgcacatgtaccccagaa---aaactataataataaaaaaaGGTAAAATAGCGATataaaatagaaatttatgagtatatactgat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29565145 324 + 173848474 cattctcagcaaactaacacaagaacagaaaaccaaacactgcatgttctcactcataagtgggagttaaacaatgagaacacatggaacagggagaggaacatcccacactggggcctgtcaggggtggaggacttggggagggatagcattaggagaaatacctaatgtagatgacgggttggtgggtgcagcaaaccaccatggcacatgtatacctatg-taacaaaccttcacgtcctgcacatgtaccccagaa---aaactgtaataataaaaaaaGGTAAAATAGCGATataaaatagaaatttatgagtatatactgat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5362573 327 +   6154872 cattctcagcaaactaacacaagaacagaaaaccaaacactgcatgttctcactcataagtgggagttaaacaatgagaacacatggaacagggagaggaacatcccacagtggggcctgtcaggggtggaggactgggggagggatagcattaggagaaatacctaatgtagatgacgggttggtgggtgcagcaaaccaccatggcacatgtatacctatg-taacaaaccttcacgtcctgcacaggtaccccagaacttaaactataataataataaaaGGTAAAATAGCGATataaaatagaaatttatgagtatatactgat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74376418 322 + 122973662 cattctcagcaaactaacacaagaacagaaaaccaaataccacacgttctcactcataagtgggacttaaacaatgagaacacatggaacagggagaggaaaatcacacactggggtctgtcggggctggagggctgggggagggatagcgttaggagaaatacgtaatgtggatgacgggttgatgggtgcagcaaaccaccatggcacacgtatacctatg-t----aaccttcacttcctgcacatgtaccgcagaacttaagctataataataa-aaaaggtaaaatagtgatataaaatagaaacttatgagtacatactgat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29527075 326 + 172585720 cattttcagcaaactaacacaagaacagaaaaccaaacactgcatgttctcactcataagtgggacttaaagaatgagaacacatggaacagggagaggaacatcaca-actggggcctgtcgggaatggggggctgggggagggatagcattaggagaaatacctaatgtaggtgacgggtcaatgggtgcagcaaaccaccatggtacatgtatacctatg-taacaaaccttcatgtcccgcacatgtaccccagaacttaaactataataataagaaaaggtaaaataatgatataaaatagaaatttatgagtatatactgat
i rheMac8.chr4             I 1884 C 0
s macFas5.chr4              29188190 325 - 170955103 cattttcagcaaactaacacaagaacagaaaaccaaacaccgcatgttctcactcataagtgggacttaaagaatgagaacacat-gaacagggagaggaacatcaca-actggggcctgtcgggaatggggggctgggggagggatagcattaggagaaatacctaatgtaggtgacgggtcaatgggtgcagcaaaccaccatggtacatgtatacctatg-taacaaaccttcatgtcccgcacatgtaccccagaacttaaactataataataagaaaaggtaaaataatgatataaaatagaaatttatgagtatatactgat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2180716 323 -   2996164 cattttcagcaaactaacacaagaacagaaaaccaaacaccacatgttctcactcataagtgggacttaaagaatgagaacacatggaacagggagaggaacatcaca-actggggcctgtcgggaatggggggctgggggagggatagcattaggagaaatacctaatgtaggtgacgggtcaatgggtgcagcaa---accatggtacatgtatacctatg-taacaaaccttcatgtcccacacatgtaccccagaacttaaactataataataagaaaaggtaaaataatgatataaaatagaaatttatgagtatatactgat
i macNem1.NW_012011356v1   I 1881 C 0
s cerAty1.NW_012001495v1     2061181 326 -   2157725 cattttcagcaaactaacacaagaacagaaaatcaaacaccgcatgttctcactcataagtgggacttaaagaatgagaacacatggaacagggagaggaacatcaca-actggggcctgtcgggaatggggggctgggggagggatagcattaggagaaatacctaatgtaggtgacgggtcaatgggtgcagcaaaccaccatggtacatgtatacctatg-taacaaaccttcatgtcccgcacatgtaccccagaacttaaactataataataaaaaaaggtaaaataatgatacaaaatagaaatttatgagtatatactgat
i cerAty1.NW_012001495v1   I 1882 C 0
s chlSab2.chr17             28491667 326 -  71996105 cattttcagcaaactaacacaagaacagaaaaccaaacaccgcatgttctcacttataagtgggacttaaagaatgagaacacatggaacagggagaggaacatcaca-actggagcctgtcaggaatggggagctgggggagggatagcattaggagaaatacctaacgtaggtgacgggtcaatgggtgcagcaaaccaccatggcacatgtatacctatattaacaaaccttcatgtcccacacatgtaccccagaacttaaactataataataa-aaaaggtaaaatagtgatataaaatagaaatttatgagtatatactgat
i chlSab2.chr17            I 1859 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1782003 1781 -   2232465 I
e calJac3.chr4             171570568 160 - 171630274 I
e manLeu1.NW_012104165v1     2196971 9357 +   2316924 I

a score=4302338.000000
s hg38.chr6_GL000254v2_alt    344848 1034 +   4827813 aaaaatataaaaaa-tgaatacatgaagggggaaaagggaaaactcttaatggcacatcaattaataaatatagagggcatactaggattggagaattattaatagatgttaaaattagtgggtgaaagttt----------aagacatttacatagtt---atgctgtctgccacaaattacttattaatttctcagg-aaaaaggcataat-----------gagatctgggggacaccatgttagtcaagtgactaaagttaacagcatcgattttaagacaaactatccttatacacttttctgaaatgttgcatcattattggctcctgaatgggagaaaatataaagaacattttggagataattaacaagatctgaatatgaactattgattacataatag-tattatatgactgtaaaatgtcccagtttttatgattgtactggctatgt-atggaagttaatgtccttagcaactatacactaaagtgtatgtagtaataaaaaggttgggaaaaattt---cacagatatgaaaactacatttatatattacatatgtgtaaaagtaaggcaaatgtaaatgaatgatgactctgga-aaagggtatttaaag-ttctgtattatacttgcaactttAAAAATTACATTAAAAATACATTATAAATGTAAAATGTAGTAAACTACATT-AAATAAGAAGATGACAATAAAAAGAACACTTGTGGTTATGATACTtcctgccagatcaaggccttagcatctactgttttgtctactctg----------aagaatttactacctcacttatagat--ctgagcctaaatgacacttccctagaagagctttccttgaacctttcctggtttaaactaatcacccatccattttattcatgaagccttgtcatttttactttatagtacttagtacaacttgtaattacatgtttagtattattatttgttttctttctcccactagactataaagtttgtgagggaaggaattgtgtctgtcttattcactaacaaatactcggcaaatagcaaaatctgtatgtatag
s panTro5.chr6              29319488 1032 + 175400573 aaaaatataaaaaa-tgaatacatgaagggggaaaagggaaaactcttaatggcacatcaattaataaata--gagggcatactaggattggagaattattaatagatgttaaaattagtgggtgaaagttt----------aagacatttacatagtt---atgctgtctgccacaaattacttattaatttctcagg-aaaaaagcataat-----------gagatctgggggacaccatgttagtcaagtgactaaagttaacagcatcgattttaagacaaactatccttatacacttttctgaaatgttgcatcattattggctcctgaatgggagaaaatataaagaacattttggagataattaacaagatctgaatatgaactattgattacataatag-tattatatgactgtaaagtgtcccagtttttattattgtactggctatgt-atggaagttaatgtccttagcaactatacactaaagtgtatgtagtaatgaaaaggttaggaaaaattt---catagatatgaaaactacatttatatattacatatgtgtaaaagtaaggcaaatgtaaatgaatgatgactctgga-aaagggtatttaaag-ttctgtattatacttgcaactttAAAAATTACATTAAAAATACATTATAAATGTAAAATGTAGTAAACTACATT-AAATAAAAAGATGACAATAAAAAGAACACTTGTGGTTATGATACTtcctgccagatcaaggccttagcatctactgttttgtctactctg----------aagaatttactacttcacttgtagat--ctgagcctaaatgacacttccctagaagagctttccttgaacctttcctggtttaaactaatcacccatccattttattcatgaagccttgtcatttttactttatagtacttagtacaacttgtaattacatgtttagtattattatttgttttctttctcccactagactataaagtttgtgagggaaggaattgtgtctgtcttattcactaacaaatactcggcaaatagcaaaatctgtatgtatag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29565469 1034 + 173848474 aaaaatataaaaaa-tgaatacatgaagggggaaaagggaaaactcttaatggcacatcagttaataaatagagagggcatactaggattggagaattattaatagatgttaaaattagtgggtgaaagttt----------aagacatttacatagtt---atgctgtctgccacaaattacttattaatttctcagg-aaaaaagcataat-----------gagatctgggggacaccatgttagtcaagtgactaaagttaacaacatcgattttaagacaaactatccttatacacttttctgaaatgttgcatcattattggctcctgaatgggagaaaatataaagaacattttggagataattaacaagatctgaatatgaactattgattacataatag-tattatatgactgtaaaatgtcccagtttttattattgtactggctatgt-atggaagttaatgtccttagcaactatacactaaagtgtatgtagtaataaaaaggttaggaaaaattt---catagatatgaaaactacatttatatattacatatgtgtaaaagtaaggcaaatgtaaatgaatgatgactctgga-aaagggtatttaaag-ttctgtattatacttgcaactttAAAAATTACATTAAAAATACATTATAAATGTAAAATGTAGTAAACTACATT-AAATAAAAAGATGACAATAAAAAGAACACTTGTGGTTATGATACTtcctgccagatcaaggccttagcatctactgttttgtctactctg----------aagaatttactacttcacttatagat--ctgagcctaaatgacacttccctagaagagctttccttgaacctttcctggtttaaactaatcacccatccattttattcatgaagccttgtcatttttactttatagtacttagtacaacttgtaattacatgtttagtattattatttgttttctttctcccactagactataaagtttgtgagggaaggaattgtgtctgtcttattcactaacaaatactcggcaaatagcaaaatctgtatgtatag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5362900 1030 +   6154872 aaaaatataaaaaagtgaatacatgaaggaggaaaagggaaaactctt-atggcacatcaattaatgaata----gggcatactaggattggagaattattaatagatgttaaaattagtgggtgaaagttt----------aagacatttgcatagtt---atgctgtctgccacaaattacttattaatttctcaga-aaaaaagcataat-----------gagatctgggggacaccatgttagttaagtgactaaagttaacagcatcgattttaagacaaactatccttatacacttttctgaaatgctgcaTCATTATTGGCTCCTGAATGGGAGAAAAtataaagaacattttggagataattaacaagatctgaatatgaactattgattacataatag-tattatgtgactataaaatgtcccagtttttatgattgtattggctatgt-atggaagttaatgtccttagcaactatacactaaagtgtatgtagtaataaaaagtttgggaaaaattt---catagatatgaaaactatatttatatattacatatgtataaaagtaaggcaaatgtaaatgaatgatgactctgga-aaagggtatttaaag-ttctgtattatacttgcaactttAAAAATTATATTAAAAATACATTATAAATGTAAAATGTAGTAAACTACATT-AAATAAAAAGATGACAATAAAAAGAACACTTGTGGTTATGATACttcctgccagatcaaggccttagcacctactgttttgtctactctg----------aagaatttactacttcacttatagat--ctgaacctaaatgacacttccctagaagagctttccttgaacctttcctggtttaaactaatcacccatccattttattcatgaagccttgtcatttttactttatagtacttagtacaacttgtaattacatgtttagtagtattatttgttttctttctcccacgagactataaaggttgtgagggaaggaattgtgtctgtcttattcactaacaaatactcagcaaatagcaAAATCTGTATGTATAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74376740 1015 + 122973662 aaaagtataaaaaagtgaatacatgaaggagg-aaagggaaaactt---atggcacatcaattaataaata----ggggatactaggattggagaattattaatagatgttaaaattagtggatgaaagttt----------aagacatttacataatt---atgctgtctcccacaaattacttattaacttctcaggaaaaaaagcataat-----------gagatctgggggacaccatgttagtcaagtgactaaagttaacagcatcgactttaaaacaaactatccttatacacttttctgaaatgttgcatc---attggctcctgaatgggtgaaaatatacagaacattttggagataattaacaagatctgaatatgaactattgattacataatag-tattatatgactgtaaaatgtcccagttttgatgactgtactggctatgt-atgtaagttaatgtccttagcaactacacactaaagtgtatgtagtaataaaaagtttggaaaaaattt---catagatatgaaaacta----tatgtattatatatgtataaaagtaaggcaaatgtaagtgaatggtgactctgga-aaagggtatttaaag-ttctgtattatacttgcaactttAAAAATTATATTAAGAATACATTATAAATGTAAAATATAGTAAACTACATT-AAATAAAAAGATGACAATAAAAAGAACACTTGTGGTTATGATACttcctgccagatcaaggccttagtacatgctgttttgtctactctg----------aagaatttactacttcacttacagat--ttgagcctaaatgacagttccctagaagagctttccttgaacctttcctggtttaaactaatcacccatccattttattcaggaagccttgtcgattttactttatagtactgagtacaacttgtaattacatgtttagtattattatttgttttctttctcccactagactacaaaggttgtgaggggagaaat------tgtcttattcactaatgaatactcggcaaatagcaaaatctgtatgtatag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29527401 1029 + 172585720 aaaaatattaaaaagtgaataaatgaagggggaaaagggaaaactctt-atggtacatcaactaataaata----aggcatactaggtttggagaattattaatagatgttaaaattggtgggtaaaagttt----------aagatatttacataatt---atgctgtctcccacaaattacttattaatttctaagg--aaaaagcataat-----------gagatctcggggacaccatgttagtcaagtgactaaagttaacagcatcgattttaagacaaattatccttatacacttttctgaaatgttgcatcatgattggctgctgaatgggagaaaatataaagaacatttcggagataattaacaagatctgaatatgaactattgattacataatagttattctatgactgtaaaatgttccagttttgatgattgtactggctatgt-atgtaagttaatgtccttagcaactacacactaaagtgtATGTAGTAATAAAAAGTTTGGAAAAAATTT---CatagatatggaaactatatttatatattatatatgtataAAAGTAAGACAAATGTAAATGAATGGTGACTCTGGA-AAAGGGTATTTAAAG-TTCTGTATTATACTTGTGACTTTAAAAATTATATTAA-AATACATTATAAATGTAAAATATAGTAAACTACATT-ACATAAAAAGATGACAATAAAAAGAACCCTAGTGGTTAagatacttcctgccagattaaggccttagcacatgctgttttttctactctg----------aagaatttactacttcacttatagat--ctgagcctaaatgacactttcctagaagagctttccttgaccctttcctggtttaaactaatcactcatccattttattcatgaaaccttgtcatttttactttatggtacttagtacaacttgtaattacatgtttagtattattatttgttttctttttcccactagactataaaggttgtgaggggaggaattgtgtctgtcttattcaccaatgaatacctggcaagtagcaAAATCtgtatgtatag
i rheMac8.chr4             C 0 I 176
s macFas5.chr4              29188515 1029 - 170955103 aaaaatattaaaaagtgaataaatgaagggggaaaagggaaaactctt-atggtacatcaactaataagta----aggcatactaggtttggagaattattaatagatgttaaaattggtgggtaaaagttt----------aagatatttacataatt---atgctgtctcccacaaattacttattaatttctaagg--aaaaagcataat-----------gagatctcggggacaccatgttagtcaagtgactaaagttaacagcatcgattttaagacaaattatccttatacacttttctgaaatgttgcatcatgattggctcctgaatgggagaaaatataaagaacatttcggagataattaacaagatctgaatatgaactattgattacataatagttattctatgactgtaaaatgttccagttttgatgattgtactggctatgt-atgtaagttaatgtccttagcaactacacactaaagtGTATGTAGTAATAAAAAGTTTGGAAAAAATTT---CATAGATATGAAAACTGTATTTATATATTATATATGTATAAAAGTAAGACAAATGTAAATGAATGGTGACTCTGGA-AAAGGGTATTTAAAG-TTCTGTATTATACTTGTGACTTTAAAAATTATATTAA-AATACATTATAAATGTAAAATATAGTAAACTACATT-AAATAAAAAGATGACAATAAAAAGAACCCTAGTGGTTAAGATACttcctgccagattaaggccttagcacatgctgttttttctactctg----------aagaatttactacttcacttatagat--ctgagcctaaatgacactttcctagaagagctttccttgaccctttcctggtttaaactaatcactcatccattttattcatgaaaccttgtcatttttactttatggtacttagtacaacttgtaattacatgtttagtattattatttgttttctttttcccactagactataaaggttgtgaggggaggaattgtgtctgtcttattcaccaatgaatacctggcaaatagcaAAATCtgtatgtatag
i macFas5.chr4             C 0 I 12
s macNem1.NW_012011356v1     2181039 1029 -   2996164 aaaaatattaaaaagtgaataaatgaagggggaaaagggaaaactctt-atggtacatcaactaataaata----aggcatactaggtttggagaactattaatagatgttaaaattggtgggtaaaagttt----------aagatatttacataatt---atgctgtctcccacaaattacttattaatttctaagg--aaaaagcataat-----------gagatctcggggacaccatgttagtcaagtgactaaagttaacagcatcgattttaagacaaattatccttatacacttttctgaaatgttgcatcatgattggctcctgaatgggagaaaatataaagaacatttcggagataattaacaagatctgaatatgaactattgattacataataattattctatgactgtaaaatgttccagttttgatgattgtactggctatgt-atgtaagttaatgtccttagcaactacacactaaagtGTATGTAGTAATAAAAAGTTTGGAAAAAATTT---CatagatatgaaaactatatttatatattatatatgtataAAAGTAAGACAAATGTAAATGAATGGTGACTCTGGA-AAAGGGTATTTAAAG-TTCTGTATTATACTTGTGACTTTAAAAATTATATTAA-AATACATTATAAATGTAAAATATAGTAAACTACATT-AAATAAAAAGATGACAATAAAAAGAACCCTAGTGGTTAagatacttcctgccagattaaggccttagcacatgctgttttttctactctg----------aagaatttactacttcacttatagat--ctgagcctaaatgacactttcctagaagagctttccttgaccctttcctggtttaaactaatcactcatccattttattcatgaaaccttgtcatttttactttatggtacttagtacaacttgtaattacatgtttagtattattatttgttttctttttcccactagactataaaggttgtgaggggaggaattgtgtctgtcttattcaccaatgaatacctggcaaatagcaAAATCtgtatgtatag
i macNem1.NW_012011356v1   C 0 I 176
s cerAty1.NW_012001495v1     2061507 1029 -   2157725 aaaaatattaaaaagtgaataaatgaagggggaaaagggaaaactctt-atggtacatcaactaataaata----aggcatactaggtttggagaatttttaatagatgttaaaattggtgggtaaaagttt----------aagatatttacataatc---atgctgtctcccacaaattacttattaatttctaagg--aaaaagcataat-----------gagatctcggggacaccatgttagtcaagtgactaaagttaacagcatcgattttaagacaaattatccttatacacttttctgaaatgttgcatcatgattggctcctgaatgggagaaaatataaagaccattttggagataattaacaagatctgaatatgaactattgattacataatagttattctatgactgtaaaatgttccagttttgatgattgtactggctatgt-atgtaagttaatgtccttagcaactacacactaaagtgtatgtagtaataaaaagtttggaaaaaattt---catagatatgaaaactatatttatatattatatatgtataaaagtaagacaaatgtaaatgaatggtgactctgga-aaagggtatttaaag-ttctgtattatacttgcgactttaaaaattatattaa-aataCATTATAAATGTAAAATATAGTAAACTACATT-AAATAAAAAGATGACAATAAAAAGAACCCTAGTGGTTAagatacttcctgccagattaaggccttagcacatgctgttttttctactctg----------aagaatttactacttcacttatagat--ctgagcctaaatgacactttcctagaagagctttccttgaccctttcctggtttaaactaatcactcatccattttattcatgaaaccttgtcatttttactttatggtacttagtacaacttgtaattacatatttagtattattatttgttttctttttcccactagactataaaggttgtgaggggaggaattgtgtctgtcttattcaccaatgaatacctggcaaatagcaAAATCtgtatgtatag
i cerAty1.NW_012001495v1   C 0 I 472
s chlSab2.chr17             28491993 1028 -  71996105 aaaaatattaaaaagtgaataaatgaagggggaaaagggaaaactctt-atggtacatcaactaataaatA----GGGCATACTAGGTTTGGagaattattaatagacgttaaaattggtgggtaaaagttt----------aagatatttacataatt---atgctgtctcccacaaattacttattaatttctaagc--aaaaagcataat-----------gagatctcggggacaccatgttagtcaagtgactaaagttaacagcatctattttaagacagattatccttatacacttttctgaaacgttgcatcatgattggctcctgaatgggagaaaatataaagaacattttggagataattaacaagatctgaatatgatctattgattacataatagttattctatgactgtaaaatgttccagttttgatgattgtactggctatgt-atgtaagttaatgtccttagcaactacacactaaagtgtATGTAGTAATAAAAAGTTTGGAAAAAATTT---CatagatatgaaaactatatttatatattatatatgtataAAAGTAAGACAAATGTAAATGAATGATGACTCTGGA-AAAGGGTATTTAAAG-TTCTGTATTATACTTGCGACTTTAAAAATTATATTAA-AATACGTTATAAATGTAAAATATAGCAAACTACATT-AAATAAAAAGATGACAATAAAAACAACCCTTGTGGTTAagatacttcctgccagattaaggccttagcacatgctgttttgtctactctg----------aagaatttactacttcacttatagat--ctgagcctaaatgacacttt-ctagaagagctttccttgaccctttcttggtttaaactaatcactcatccattttattaatgaaaccttgtcatttttactttatagtacttagtacaacttgttattacatgtttagtattattatttgttttctttctcccactagactatagagattgtgaggggaggaactgtgtctgtcttattcaccaatgaatacctggcaaatagcaaaatctgtatgtatag
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873742           1783784 1005 -   2232465 aaaaagaaaaagaa------aaaaaaaatggaaaaagagcaaacatc--atagaattgcaaatattaaatatagaagacatac---------------------------taaaattagtgagtgaaagtttgatcaagataaagatatttacataatttcaaagtattatctcacaaataatttattaatttctaagg-aaaaagtcatgacttcaccttggagagatttgggagacactatcttagccaaaagattaaagttaacag-atcagttttaagacaaaccag-ctcatgggcctttctaaaatgattcattgagattggcTTCTGCACAGGGAAAAAtataaagaatattttggagctaattgataagatctggatatgaactttggattagataatag-tagtatatcacagtaaagtgtcccagttttgttaaatgtacttgctatataacagaatattctattttggggaattatatattgaagtgt------tAATTGATAGCTTGAAAAAAATTTATACCTATGTGTATATATTAAAATTATACATAATCT-TATATGACATGGAGG-AGGTGTAAACAATTGGTAACTATGGATAGTGGGTATATATAGTTTTTATGTTATTCTTACaatttt-aaaattatattag-aatgtattataaatataaaatatgttaaattatatgaaaataaaaGTGTAAAAATAAAAGAAACATTTGTactctagatatttcctgccaaattaaggctttaacatatgctgtttcttctgctttgaatttcctctaatagtcacctactttttttctacctcactaagcctaaatgatacttc-ttagaagagctttccttgatcctctcctggttttaattcattaccctcccattttattcatgaagtgttgccatttttaccctgtaacacttattataacttgcaatgacacatttagtctcattatttgtt-------------------------attgtgttgaaagaagttgaacctgtctcattcactaataaatacccaggaactagtaaaatctatgtatgttg
i otoGar3.GL873742         I 1781 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570568  160 - 171630274 I
e manLeu1.NW_012104165v1     2196971 9357 +   2316924 I

a score=51414.000000
s hg38.chr6_GL000254v2_alt    345882 25 +   4827813 taagcgattgaaaaacattAGGCAA
s panTro5.chr6              29320520 25 + 175400573 taagcgattgaaaaacattAGGCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29566503 25 + 173848474 taagcgattgaaaaacattAGGCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5363930 25 +   6154872 TAAGCAATTGAAAAACATTAGGCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74377755 25 + 122973662 taagcagttgaaaaacattAGGCAA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29189556 25 - 170955103 taAGCAATTGAAAAACATTAGGCAA
i macFas5.chr4             I 12 C 0
s chlSab2.chr17             28493021 25 -  71996105 taagcaattgaaaaacattAGGCaa
i chlSab2.chr17            C 0 I 139
s otoGar3.GL873742           1784789 22 -   2232465 taggtgacc---aaataataggcaa
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570568 160 - 171630274 I
e manLeu1.NW_012104165v1     2196971 9357 +   2316924 I
e cerAty1.NW_012001495v1     2062536 472 -   2157725 I
e macNem1.NW_012011356v1     2182068 176 -   2996164 I
e rheMac8.chr4              29528430 176 + 172585720 I

a score=7563.000000
s hg38.chr6_GL000254v2_alt    345907 19 +   4827813 atttataact---attttaata
s panTro5.chr6              29320545 19 + 175400573 atttataact---attttaata
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29566528 19 + 173848474 atttataact---attttaata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5363955 19 +   6154872 GTTtataact---attttaata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74377780 16 + 122973662 atatat---t---attttaata
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29189581 22 - 170955103 GAATATAACTGACATTTAGATA
i macFas5.chr4             C 0 I 116
s otoGar3.GL873742           1784811  2 -   2232465 -------------------at-
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570568 160 - 171630274 I
e manLeu1.NW_012104165v1     2196971 9357 +   2316924 I
e chlSab2.chr17             28493046 139 -  71996105 I
e cerAty1.NW_012001495v1     2062536 472 -   2157725 I
e macNem1.NW_012011356v1     2182068 176 -   2996164 I
e rheMac8.chr4              29528430 176 + 172585720 I

a score=207633.000000
s hg38.chr6_GL000254v2_alt    345926 208 +   4827813 tctgtatatactatatatctatatataatatCTTTGC-TCTGGATGTGCACTTAGGAAGGCAGAGAAAATTTAAGTGTCTCTGATTTAGGTGGTATGTGATAATAATGTAGATACAAGTAATATAAAAATATTTTAGAACATTGATGGTGATTCAAATTTTAGAGC---TCAACCCATCTTATTTTTGTTATTTAAGTTACTAATG-CCCCCC
s panTro5.chr6              29320564 208 + 175400573 tctgtatatactatatatctatatataatatCTTTGC-TCTGGATGTGCACTTAGGAAGGCAGAGAAAATTTAAGTGTCTCTGATTTAGGTGGTATGTGATAATAATGTAGATACAAGTAATATAAAAATATTTTAGAACTTTGATGGTGATTCAAATTTTAGAGC---TCAACCCATCTTATTTTTGTTATTTAAGTTACTAATG-CCCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29566547 208 + 173848474 tctgtatatactatatatctatatataatatCTTTGC-TCTGGATGTGCACTTAGGAAGGCAGAGAAAATTTAAGTGTCTCTGATTTAGGTGGTATGTGATAATAATGTAGATACAAGTAATATAAAAATATTTTAGAACTTTGATGGTGATTCAAATTTTAGAGC---TCAACCCATCTTATTTTTGTTATTTAAGTTACTAATG-CCCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5363974 208 +   6154872 tctgtatatactatagatctatatataatatCTTTGC-TCTGGATGTGCACTTAGGAAGGCAGAGAAAATTTAAGTGTCTCTGATTTAGGTGGTATGTGATAATAATGTAGATATGAGTAATATAAAAATATTTTAGAACATTGATGGTGATTCAAATTTTAGAGC---TCAACCCACCTTATTTTTGTTATTTAAGTTACTAATG-CCCCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74377796 197 + 122973662 tctgtatatacta------tatatataatatCTTTGC-TCTGGATGTGCACTTAGGAAGGCAGAGAAAATTTAAGTG--TCTGATTTAGGTGGTAT----TAATAATGTAGATATGAGTAATACAAAAACATTTTAGAACATTGATGGTGATTTAAATTTTAGAGC---TCAACTCACCTTATTTTTGTTATTCAAGTTACTAATGCCCCCCC
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873742           1784813 188 -   2232465 --------------------gaatATTATCTCTCTACTTCTGGAAGTGCGTTTAAGAGGGCAGGCAAATTTTAGGTGTCTCTGACTTAAGTGTTATGTGATAACAATGtaaatataaataatataaatatattttagaatatttatgat--tttaaaatCAGGTGTGGGTCAAAGTATCCTACTGTGCATCTTTA--TTACTTCTG-TCTCCC
i otoGar3.GL873742         C 0 N 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570568 160 - 171630274 I
e manLeu1.NW_012104165v1     2196971 9357 +   2316924 I
e chlSab2.chr17             28493046 139 -  71996105 I
e cerAty1.NW_012001495v1     2062536 472 -   2157725 I
e macNem1.NW_012011356v1     2182068 176 -   2996164 I
e macFas5.chr4              29189603 116 - 170955103 I
e rheMac8.chr4              29528430 176 + 172585720 I

a score=26534.000000
s hg38.chr6_GL000254v2_alt    346134 30 +   4827813 AAAGTATAAATATTTATAAAATTATTTTTA
s panTro5.chr6              29320772 30 + 175400573 AAAGTATAAATATTTATAAAATTATTTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29566755 30 + 173848474 AAAGTATAAATATTTATAAAATTATTTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5364182 30 +   6154872 AAAGTATAAATATTTATAAAATTATTTTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74377993 30 + 122973662 AAAGTATAAATATTTATAAAATTATTATTA
i nomLeu3.chr1a            C 0 I 5146
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570568 160 - 171630274 I
e manLeu1.NW_012104165v1     2196971 9357 +   2316924 I
e chlSab2.chr17             28493046 139 -  71996105 I
e cerAty1.NW_012001495v1     2062536 472 -   2157725 I
e macNem1.NW_012011356v1     2182068 176 -   2996164 I
e macFas5.chr4              29189603 116 - 170955103 I
e rheMac8.chr4              29528430 176 + 172585720 I

a score=441650.000000
s hg38.chr6_GL000254v2_alt    346164 816 +   4827813 AGAAGACTTTGGGAAATTATTAATGGTAAGCTTGAAGGTTGGAGTAGATATTTCTAAAATTAGTTGCCAAATTTATAAATACATTAATAAAAATTTCACTATCAATAATTTTTATTTCAAATAAAATTCAACTTTAGGTTATTATGGCTTTAAGATAGTGTCTAATGGGAAGCAAATAAACATTAATGCAAGACTTTTCAAGGTGAAATAGACTTAGAGCACCAGTTTTATGATGTTTAGACTTTTTCCTAATACTTAAGAAATTGTATGATGaaatcagaaaatacagaaaaataagaagcctggaataaaaatttcctgatatcctgtcacttacctcaccacagttagcttggtgaacttatttctagtgttttcttacacatataggtatacataaaattagggtcatgttctaagtgtagaatcgtttcttgagttttctccaccacttaacagtgagtatttctccataatattattttttttaaaaaAAATGGCCAATTAACAtatgctggtaaacaagtccatcataaaggcttaaaccaacaaatatttcatttttgcttatgttttgtgtttattgaatgttgctagggacttgtccatgtcattgtgcattagggatccaaactgatgaagtagacactatccaaagttctctagattgttgtgatagagggaaataaaagttgcaaaacacactctgcccttaaaatgtcttcccagaagttaaacaatcactGTAACCACTGGGCAGTTCTTGTGAGGCGTTCCAAATGTGAGTTTGGAAATGTCCCTATATCCCACTCATTG
s panTro5.chr6              29320802 813 + 175400573 AGAAGACTTTGGGAAATTATTAATGGTAAGCTTGAAGGTTGGAGTAGATATTTCTAAAATTAGTTGCCAAATTTATAAATACATTAATAAAAATTTCACTATCAATAATTTTTATTTCAAATAAAATTCAACTTTAGGTTATTATGGCTTTAAGATAGTGTCTAATGGGAAGCAAATAAACATTAATGCAAGACTTTTCAAGGTGAAATAGACTTAGAGCACCAGTTTTATGATGTTTAGACTTTTTCCTAATACTTAAGAAATTGTATGATGaaatcagaaaatacagaaaaataagaagcctggaataaaaatttcctgatatcctgtcacttacctcaccacagttagcttggtgaacttatttctagtgttttcttacacatataggtatatataaaattagggtcatgttctaagtgtagaatcgtttcttgagttttctccaccacttaacagtgagtatttctccataatattaTTTTTTTTTTAAA---TGGCCAATTAACAtatgctggtaaacaagtccatcataatggcttaaaccaacaaatatttcatttttgcttatgttttgtgtttattgaatgttgctagggactcgtccatgtcattgtgcattagggatccaaactgatgaagtagacactatccaaagttctctagattgttgtgatagagggaaataaaagttgcaaaacacactctgcccttaaaatgtcttcccagaagttaaacaatcactGTAACCACTGGGCAGTTATTGTGAGGCGTTCCAAATGTGAGTTTGGAAATGTCCCTATATCCCACTCATTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29566785 812 + 173848474 AGAAGACTTTGGGAAATTATTAATGGTAAGCTTGAAGGTTGGAGTAGATATTTCTAAAATTAGTTGCCAAATTTATAAATACATTAATAAAAATTTCACTATCAATAATTTTTATTTCAAATAAAATTCAACTTTAGGTTATTATGGCTTTAAGATAGTGTCTAATGGGAAGCAAATAAACATTAATGCAAGACTTTTCAAGGTGAAATAGACTTAGAGCACCAGTTTTATGATGTTTAGACTTTTTCCTAATACTTAAGAAATTGTATGATGaaatcagaaaatacagaaaaataagaagcctggaataaaaatttcctgatatcctgtcacttacctcaccacagttagcttggtgaacttatttctagtgttttcttacacatataggtatacataaaattagggtcatgttctaagtgtagaatcgtttcttgagttttctccaccacttaacagtgagtatttctccataatattaTTTTTTTTTAAA----TGGCCAATTAACAtatgctggtaaacaagtccatcataatggcttaaaccaacaaatatttcatttttgcttatgttttgtgtttattgaatgttgctagggactcgtccatgtcattgtgcattagggatccaaactgatgaagtagacactatccaaagttctctagattgttgtgatagagggaaataaaagttgcaaaacacactctgcccttaaaatgtcttcccagaagttaaacaatcactGTAACCACTGGGCAGTTATTGTGAGGCGTTCCAAATGTGAGTTTGGAAATGTCCCTATATCCCACTCATTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5364212 803 +   6154872 AGAAGACTTTGGGAAATTATTAATGGTAAGCTTGAAGGTTGGAGTAGATATTTCTAAAATTAGTTGCCAAATTTATAAATACATTAATAAAAATTTCACTATC---AATTTTTATTTCAAATAAAATTCAACTTTAGGTTATTATGGTTTTAAGATGGTGTCTAATGGGAAGCAAATAAACATTAATGCAAGACTTTTCAAGGTGAAATAGACTTAGATCACCAGTTTTATGATGTTTAGACTTTTTCCTAATACTTAAGAAATTGTATGATGaaatcagaaaatacagaaaaataagaagcctggaataaaaatttcctgatatcctgtcacttacctcaccacagttagcttggtgaacttatttctagtgttttcttacacatataggtatacataaaattagggtcatgttctaagtgtagaatcgtttcttgagttttctccaccacttaacagtgagtatttctccatagta----ttTTTTTTAAA----TGGCCAATTAACAtatgctggtaaacaagtccatcataatagcttaaaccaacaaagatttcatttttgcttatgttt--tgtttattgaatgttgctagggactcatccatgtcattgtgcattagggatccaaactgatgaagtagacactatccaaagttctctagattgttgtgatagagggaaataaaagttgcaaaacacactctgcccttaaaatgtcttcccagaagttaaacaatcactGTAACCACTGGGCAGTTATTGTGAGGCGTTCCAAATGTGAGTTTGGAAATGTCCCTATATCCCACTCATTG
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570568 160 - 171630274 I
e manLeu1.NW_012104165v1     2196971 9357 +   2316924 I
e chlSab2.chr17             28493046 139 -  71996105 I
e cerAty1.NW_012001495v1     2062536 472 -   2157725 I
e macNem1.NW_012011356v1     2182068 176 -   2996164 I
e macFas5.chr4              29189603 116 - 170955103 I
e rheMac8.chr4              29528430 176 + 172585720 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=43851.000000
s hg38.chr6_GL000254v2_alt    346980 56 +   4827813 AAAAGTAGCTCCTCCATCCATTGTTCTTCATAACCCTCGGGTtccactcagttgtt
s panTro5.chr6              29321615 56 + 175400573 AAAAGTAGCTCCTCCATCCATTGTTCTTCATAAccctcgggttccactcagttgtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29567597 54 + 173848474 -AAAGTAGCT-CTCCATCCATTGTTCTTCATAACCCTCGGGTTCCACTCAGTTGTT
i panPan2.chr6             C 0 I 95
s gorGor5.CYUI01015250v1     5365015 56 +   6154872 AAAAGTAGCTCCTCCATCCATTGTTCTTCATAACCCTCGGGTTCCACTCAATTGtt
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742           1671695 56 -   2232465 AGAAGTAGCTCTTCCATGCATCATTCTTCATAACCCTTGGGTTCTACCCAATCACT
i otoGar3.GL873742         N 0 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570568 160 - 171630274 I
e manLeu1.NW_012104165v1     2196971 9357 +   2316924 I
e chlSab2.chr17             28493046 139 -  71996105 I
e cerAty1.NW_012001495v1     2062536 472 -   2157725 I
e macNem1.NW_012011356v1     2182068 176 -   2996164 I
e macFas5.chr4              29189603 116 - 170955103 I
e rheMac8.chr4              29528430 176 + 172585720 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=35193.000000
s hg38.chr6_GL000254v2_alt    347036 76 +   4827813 aggttcattatctgccttctaagttattgcaggtgatagtttatgaaatgtttccttattgtataacatggatcac
s panTro5.chr6              29321671 76 + 175400573 aggttcattatctgccttctaagttattgcaggtgatagtttatgaaatgtttccttattgtataacatggatcAC
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5365071 76 +   6154872 aggttcattatctgccttctaagttattgcaggtgatagtttatgaaatgtttccttattgtataacatggatcac
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742           1671751 76 -   2232465 GAGTTCATTATCTGCCTTCAAAATTATTATAGTTGCTAGTTTACCAAACATTTCCTTCCTGTATAAAATAGATCAC
i otoGar3.GL873742         C 0 I 9
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570568 160 - 171630274 I
e manLeu1.NW_012104165v1     2196971 9357 +   2316924 I
e chlSab2.chr17             28493046 139 -  71996105 I
e cerAty1.NW_012001495v1     2062536 472 -   2157725 I
e macNem1.NW_012011356v1     2182068 176 -   2996164 I
e macFas5.chr4              29189603 116 - 170955103 I
e rheMac8.chr4              29528430 176 + 172585720 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I
e panPan2.chr6              29567651 95 + 173848474 I

a score=39178.000000
s hg38.chr6_GL000254v2_alt    347112 220 +   4827813 ttta-tctcccttcctccctccctcccttcctccctcccttctctttttccttccttccttccttccttccctttttccttccttccttcccttttttttcttctttcccttccctccctccctctctctttctcttt-cttttctttc-----------ctttc--tctctttctttctttctctttcttttctttcttttttctcctctttctttcaccctccctgtctttct
s panTro5.chr6              29321747 210 + 175400573 TTTAGTctcccttcctccctccctcccttcctccctccctcc------------------------cttccctTtttccttccttccttcccttttttt-cttctttcccttccctccctccctctctctttctcttttctttcctttctctctctttttctttccttctctttctttctttctctttcttttctttcttttttctcctctttctttcaccctccctgtctttct
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5365147 187 +   6154872 tgtagtctcccttccttcctccctcccttcccttttccttcc-------------------------------------ttccttccttcccttttttt-cttctttcccttccctccctccctctctctttctcttt-cttttctttt-----ctttctgtctctttttctttctttctttctctttcttttctttctttcttctcctctttctttcaccctccctgtct----
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1671827   9 -   2232465 I
e calJac3.chr4             171570568 160 - 171630274 I
e manLeu1.NW_012104165v1     2196971 9357 +   2316924 I
e chlSab2.chr17             28493046 139 -  71996105 I
e cerAty1.NW_012001495v1     2062536 472 -   2157725 I
e macNem1.NW_012011356v1     2182068 176 -   2996164 I
e macFas5.chr4              29189603 116 - 170955103 I
e rheMac8.chr4              29528430 176 + 172585720 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I
e panPan2.chr6              29567651  95 + 173848474 I

a score=735043.000000
s hg38.chr6_GL000254v2_alt    347332 1345 +   4827813 ttcttctttcttt--ctttttctttctttctctctttcttctctttctt--------------------------tcttttttttgagacagggtcttctctgtctgtactctgcagtggtgtgatcttggctccctgctgccttaacctcccaggctcaggtgatccttctgcctcagcatcccctagtagctgggactacaagtgtttgctcctacacccaatgaatttttgtatttttt-tagagatgagttttcactactttgctcaggcttgtcttgaactcctgagctcaggcaatctgcccaccttggcctcccaaagtgctgggattacaggtgtgagccaccaaacctggcACCATAATTTCAATCTCTCTCAttttttattagacttttactttaggttcaggggtacatgtgcaggtttgttacgtaggtaaatcgtatttcatagggtttgttgtatagactatttcaccacccaggtgataagcatagtatatgataggtagttttttagtccttaaaaaactaaaccaccctcaagtaggcctcagagtctacttttcccttctttgtgttcatgtgtactcagtgtttagttctcacttatgaatgagagtgtgaggtatttggttttctgtgcctacgttactttgcttaagaaaatggtcttcagctccatccatgttcctgcaaaaggcatcatctaattctttttctgtggctgcttagtattccatggtgtatatgtagcacattttctttagccagtctaccCCAggagaggccggcagacaagggagcactcagattagactggtcccatcccacaggtaagatagccctgctccgttcaggtctggcagttaccataggctgagaccacctagaggagcatggtgagctttgggggaatgggcgtctctggccatgctccactgcagccgttcctgtgtcagaccctctgggcttttcacaggctgaagtcctgtccttgccacctttccaaatagctctccctgccagctcaagtgtccgcggggtcatggggtctcctgcagttgggattctggaggtctgtggcgagagtggccactcctcgtgtgttcaacggacctcttccccaggagtcactgcgggccaagaacatgggccagaaacgagtccgggtactctgcaactccgtgcaaagttccgaggtttctcaccctccagcccaggttctatgtcctccctctgtccaccctcaatgccttccctccgaagatcggctcggagtatgccagtcttcctgatatcctggtctgttgtggaagatgttcttcctggctgtgtcactgaccatcttggcccCTCTCAGTTTCAGGC
s panTro5.chr6              29321957 1355 + 175400573 ttcttctttcttt--ctttttctttctttctctctttcttctctttctt-----------------ctctttctttcttttttctgagacagggtcttctctgtctgtactctgcagtggtgtgatcttggctccctgctgccttaacctcccaggctcaggtgatccttctgcctcagcatcccctagtagctgggactacaagtgtttgctcctacacccaatgaatttttgtattttttgtagagatgagttttcactactttgctcaggcttgtcttgaactcctgagctcaggcaatctgcccaccttggcctcccaaagtgctgggattacaggtgtgagccaccaaacctggcTCCATAATTTCAATCTCTCTCAttttttattagacttttactttaggttcaggggtacatgtgcaggtttgttacgtaggtaaatcgtatgtcatggggtttgttgtatagactatttcaccacccaggtgataagcatagtatatgataggtagttttttagtccttaaaaaactaaaccaccctcaagtaggcctcagagtctacttttcccttctttgtgttcatgtgtactcagtgtttagttctcacttatgaatgagagtgtgaggtatttggttttctgtgtctacgttagtttgcttaagaaaatggtcttcagctccatccatgttcctgcaaaaggcatcatctaattctttttctgtggctgcttagtattccatggtgtatatgtagcacattttctttagccagtctaccCCAggagaggccagcagacaagggagcactcagattagactggtcccatcccacaggtaagatagccctgctccgttcaggtctggcagttaccataggctgagacaacctagaggagcatggtgagctttgggggaatgggcgtctctggccatgctccactgcagccgttcctgtgtcagaccctctgggcttttcacaggctgaagtcctgtccttgccacctttccaaatagctctccctgccagctcaagtgtccgcggggtcatggggtctcctgcagttgggattctggaggtctgtggcgagagtggccactcctcgtgtgttcgacggacctcttccccaggagtcactgcgggccaagaacatgggccagaaacgagtccgggtactctgcaactccgtgcaaagttccgaggtttctcaccctccagctcaggttctatgtcctccctctgtccactctcaatgccttccctccgaagatcggctcggagtatgccagtcttcctgatatcctggtctgttgtggaagatgttcttcctggctgtgtcactgaccatcttggcccCTCTCAGTTTCAAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29567746 1347 + 173848474 ttcttctttcttttctttcttctctcttcttctctttcttctctttct---------------------------tcttttttctgagacagggtcttctctgtctgtactctgcagtggtgtgatcttggctccctgctgccttaacctcccaggctcaggtgatccttctgcctcagcatcccctagtagctgggactacaagtgtttgctcctacacccaatgaatttttgtattttttgtagagatgagttttcactactttgctcaggcttgtcttgaactcctgagctcaggcaatctgcccaccttggcctcccaaagtggtgggattacaggtgtgagccaccaaacctggcTCCATAATTTCAATCTCTCTCAttttttattagacttttactttaggttcaggggtacatgtgcaggtttgttacgtaggtaaatcgtatgtcatggggtttgttgtatagactatttcaccacccaggtgataagcatagtatatgataggtagttttttagtccttaaaaaactaaaccaccctcaagtaggcctcagagtctacttttcccttctttgtgttcatgtgtactcagtgtttagttctcacttatgaatgagagtgtgaggtatttggttttctgtgtctacgttagtttgcttaagaaaatggtcttcagctccatccatgttcctgcaaaaggcatcatccaattctttttctgtggctgcttagtattccatggtgtatatgtagcacattttctttagccagtctaccCCAggagaggccagcagacaagggagcactcagattagactggtcccatcccacaggtaagatagccctgctccattcaggtctggcagttaccataggctgagacaacctagaggagcatggtgagctttgggggaatgggcgtctctggccatgctccactgcagccgttcctgtgtcagaccctctgggcttttcacaggctgaagtcctgtccttgccacctttccaaatagctctccctgccagctcaaatgtccgcagggtcatggggtctcctgcagttgggattctggaggtctgtggcgagagtggccactcctcgtgtgttcaacggacctcttccccaggagtcactgcgggccaagaacatgggccagaaacgagtccgggtactctgcaactccgtgcaaagttccgaggtttctcaccctccagctcaggttctatgtcctccctctgtccactctcaatgccttccctccgaagatcggctcggagtatgccagtcttcctgatatcctggtctgttgtggaagatgttcttcctggctctgtcactgaccatcttggcccCTCTCAGTTTCAAGC
i panPan2.chr6             I 95 C 0
s gorGor5.CYUI01015250v1     5365334 1369 +   6154872 ttcttctttcttt--ctttttctttctttctctctttcttctctttctttctctctttcttctcttctctttctttcctttttttgagacagggtctcctgtgtctgcactctgcagtggtatgatcttggctccctgctgccttaacctcccaggctcaggtgatccttctgcctcagcatcccctagtagctgggactacaagtgtttcctcctacacccaatgaa-ttttgtattttttgtagagatgagttttcactactttgctcaggcttgtcttgaactcctgagctcaggcaatctgcccaccttggcctcccaaagtgctgggattacaggtgtgagccaccaaacctggcACCATAATTTCAATCTCTCTC-ttttttattagacttttattttaggttcaggggtacatgtgcaggtttgttatgctggtaaatcgtatgtcatggggtttgttgtatagactatttcaccacccaggtgataagcatagtatatgataggtagttttttagtccttaaaaaactaaaccaccctcaagtaggcctcagagtctacttttcccttctttgtgttcatgtgtactcagtgtttagttctcacttatgaatgagagtgtgaggtatttggttttctgtgcctatgttagtttgcttcagaaaatggtcttcagctccatccatgttcctgcaaaaggcatcatctaattctttttctgtggctgcttagtattccatggtgtatatgtagcacattttctttagccagtctaccCCAggagaggccggcagacaagggagcactcagattagactggtcccatcccacagctaagatagccctgctcctttcaggtctggcagttaccataggctgagaccacctagaggagcatggtgagcttt-ggggaatgggcgtctctggccatgctccactgcagccgttcctgtgtcagaccctctgggcttttcacaggctgaagtcctgtccttgccacctttccaaatagctctccctgccagctcaagtgtccacggagtcatggggtctcctgcagctgggattctggaggtctgtggcgagagtggccactcctcatgtgttcaacggacctcttccccaggagtcactgcgggccaagaacatgggctagaaacgagtccaggtactctgcaactccgtgcaaagttcccaggtttctcaccctccagcccaggttctatgtcctccctctgtccactctcaatgccttccctccgaagatcggcttggagtatgccagtcttcctgatatcctggtctgttgtggaagatgttcttcttggctgtgtcactgaccatcttggcccCTCTCAGTTTCAGGT
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1671827    9 -   2232465 I
e calJac3.chr4             171570568  160 - 171630274 I
e manLeu1.NW_012104165v1     2196971 9357 +   2316924 I
e chlSab2.chr17             28493046  139 -  71996105 I
e cerAty1.NW_012001495v1     2062536  472 -   2157725 I
e macNem1.NW_012011356v1     2182068  176 -   2996164 I
e macFas5.chr4              29189603  116 - 170955103 I
e rheMac8.chr4              29528430  176 + 172585720 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=424635.000000
s hg38.chr6_GL000254v2_alt    348677 554 +   4827813 TTTACTATCATATCCCTCATCATCTGCCATGTGATCCTTTTGCCAGTGCCTCATATTTTAATTTCCTAACATTTGTTTcaggctgattgagaac-ctacctggaacattgttttgattgccagagggaaagagaacatggcagagtatgtactagattttgaagtcatcaaaaaata-----acccacatcatttctcttcacattttattggcaaatcatattaaacagccaggtctgcattcgataggacagggatgtgcaattttaccatctgcctagaaggggagaaaaaataaaatatttataaacattcctaatgTATTCAATTTATGAAAAATACTCTACTTTC-AAAATACTCAAGGAAAT--------AACAAATAGGAACTTGATAATGTTTCTGCTTCTAaaattggcatattcatcaaaagatgaaa-ctctcagagtttgc-aaaagctcgtgaagcaaccattctcatttgctatatacagtgatctatctgggaatgtggaatgtt--ataaaatttctacagcacaatttgaccatatctattaactcttagatctt
s panTro5.chr6              29323312 554 + 175400573 TTTACTATCATATCCCTCATCATCTGCCATGTGATCCTTTTGCCAGTGCCTCATATTTTAATTTCCTAACATTTGTTTcaggctgattgagaac-ctacctggaacattgttttgattgccagagggaaagagaacatggcagagtatgtactagattttgaagtcatcaaaaaata-----acccacatcatttctcttcacattttattggcaaatcatattaaacagccaggtctgcattcgataggacagggatgtgcaattttaccatctgcctagaaggggagaaaaaataagatatttataaacattcctaatgTATTCAATTTATGAAAAATACACTACTTTC-AAAATACTCAAGGAAAT--------AACAAATAGGAACTTGATAATGTTTCTGCTTCTAaaattggcatattcatcaaaagatgaaa-ctctcagagtttgc-aaaagctcgtgaagcaaccattctcatttgctatatacagtgatctatctgggaatgtggaatgtt--ataaaatttctacagcacaatttgaccatatctattaactcttagatctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29569093 554 + 173848474 TTTACTATCATATCCCTCATCATCTGCCATGTGATCCTTTTGCCAGTGCCTCATATTTTAATTTCCTAACATTTGTTTcaggctgattgagaac-ctacctggaacattgttttgattgccagagggaaagagaacatggcagagtatgtactagattttgaagtcatcaaaaaata-----acccacatcatttctcttcacattttattggcaaatcatattaaacagccaggtctgcattcgataggacagggatgtgcaattttaccatctgcctagaaggggagaaaaaataagatatttataaacattcctaatgTATTCAATTTATGAAAAATACACTACTTTC-AAAATACTCAAGGAAAT--------AACAAATAGGAACTTGATAATGTTTCTGTTTCTAaaattggcatattcatcaaaagatgaaa-ctctcagagtttgc-aaaagctcgtgaagcaaccattctcatttgctatatacagtgatctatctgggaatgtggaatgtt--ataaaatttctacagcacaatttgaccatatctattaactcttagatctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5366703 554 +   6154872 TTTACTATCATATTCCTCATCGTCTGCCATGTGATCCTTTCGCCAGTGCCTCATATTTTAATTTCCTAACATTTGTTTTaggctgattgagaac-ctacctggaacattgttttgattgccagagggaaagagaacatggtagagtatgtactagattttgaagtcatcaaaaaatg-----acccacatcatttcccttcacattttgttggcaaatcatattaaacagccaggtctgcattcgataggacagggatgtgcaattttaccatctgcctagaaggggagaaaaaataaaatatttataaacattcctaatgTATTCAATTAATGAAAAATACACTACTTTC-AAAATACTCAAGGAAAT--------AACAAATAGGAACTTTATAATGTTTCTGCTTCTAAAATTCGCATATTCATCAAAAGATGAAA-CTCCCCGACTTTGC-AAAAGCTCATGAAGCAACCATTCTCATTTGCTATATACAGTGATCTATCtgggaatgtggaatgtt--acaaaatttctacagcacaatttgaccatatctattaactcttagatctt
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742           1671836 564 -   2232465 TTTAATATCATATTCCTCACCATTTGCCACATTAACTTTATGCCAGTGCCTCTTATTTTAATTTCTTAGCATCAATTTcaggctgattgagtacactacctggaacattattttgatttgaatagggaaaaagaacatggcagaatgtgcactaggttttaaagtcattaaaaaaaaaaaagacccacatcatttttgttcacattgtattggcaaaacaaattaaatagacagacctgcattcaaaagggcagggaagtgcgagtctaccatctgca-aggagggaagaagaaatcagatatttatgaacaTCCTGAATTTATCCcatgt-ttaaaaatacattactctcaaaaatattcaaggaaataaaaatagaaaaaagaaaaacttgataatatttctgcctctaaaattggcaaatgagtcagaagatgaaagctcccagagtgtgcaaaaagcccatgaagcaaatattctcatttactgtatacagtgat---tgtaggaacgtagaatactgcacagagttt----agtgcaatttggcaatatctattaattcttagatctt
i otoGar3.GL873742         I 9 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570568 160 - 171630274 I
e manLeu1.NW_012104165v1     2196971 9357 +   2316924 I
e chlSab2.chr17             28493046 139 -  71996105 I
e cerAty1.NW_012001495v1     2062536 472 -   2157725 I
e macNem1.NW_012011356v1     2182068 176 -   2996164 I
e macFas5.chr4              29189603 116 - 170955103 I
e rheMac8.chr4              29528430 176 + 172585720 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=109545.000000
s hg38.chr6_GL000254v2_alt    349231 204 +   4827813 ctaagaaatttataattagagccagtaattcagtttttcagaatataaactgacatttagacacaaattcatattgaattattggcagtagtagtaacaataatcaaaacaaggagtgtaaatatgttcaacaataggaaagtggttaaatagattttaatacacttccttggtgaaattaaatttgcagcttttttttttttt
s panTro5.chr6              29323866 204 + 175400573 ctaagaaatttataattagagccagtaattcagtttttcagaatataaactgacatttagacacaaattcatattgaattattggcagtagtagtaacaataatcaaaacaaggagtgtaaatatgttcaacaataggaaagtggttaaatagattttaatacacttccttggtgaaattaaatttgcagcttttttttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29569647 204 + 173848474 ctaagaaatttataattagagccagtaattcagtttttcagaatataaactgacatttagacacaaattcatattgaattattggcagtagtagtaacaataatcaaaacaaggagtgtaaatatgttcaacaataggaaagtggttaaatagattttaatacacttccttggtgaaattacatttgcagcttttttttttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5367257 202 +   6154872 ctaagaaatttataatttgagccagtaattcagtttttcagaatataaactgacatttaggcacaaattcatattgaattattggcagtagtagtaacaataatcaaaacaaggagtgtaa--atgttcaacagtaggaaagtggttaaatgggttttaatacacttccttggtgaaattaaatttgcagcttttttttttttt
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1672400   0 -   2232465 C
e calJac3.chr4             171570568 160 - 171630274 I
e manLeu1.NW_012104165v1     2196971 9357 +   2316924 I
e chlSab2.chr17             28493046 139 -  71996105 I
e cerAty1.NW_012001495v1     2062536 472 -   2157725 I
e macNem1.NW_012011356v1     2182068 176 -   2996164 I
e macFas5.chr4              29189603 116 - 170955103 I
e rheMac8.chr4              29528430 176 + 172585720 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=121586.000000
s hg38.chr6_GL000254v2_alt    349435 166 +   4827813 ttttttttt-------gagatggagtctcgctctgtcgcccaggctggagtgcagtggcgcaatctcggctcactgcaaactccgcctcctgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcctgccaccatgcccggctatttttttgt
s panTro5.chr6              29324070 173 + 175400573 ttttttttttttttttgagatggagtctcactctgtcgcccaggctggagtgcagtggcgcaatcttggctcactgcaaactccgcctcctgggttcacaccattctcctgcctcagcttcccgagtagctgggactacaggcgcctgccaccatgcccggctatttttttgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29569851 160 + 173848474 ttt-------------gagatggagtcttgctctgtcgcccaggctggagtgcagtggcgcaatctcggctcactgcaaactccgcctcctgggttcacgccattctcctgcctcagcttcccgagtagctgggactacaggcgcctgccaccatgcccggctatttttttgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5367459 168 +   6154872 ttttttttttt-----gagatggagtctcgctcggtcgcccaggctggagtgcagtggcgcaatctcggctcactgcaaactccgcctcctgggttcacaccattctcctacctcagcctcccgagtagctgggactacaggcacctgccaccatgcccggctatttttttgt
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742           1672400 163 -   2232465 ttttttttt-------gagacagacactcaagctgtcgccctgggtagagtgctgtagc---atcacagctcacagcaacctccaactcctgggttcaagtgattctcctgcctccacctaccaagtagttgggtctacagacacctgccacaacgcctggctattttttggt
i otoGar3.GL873742         C 0 I 301
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570568 160 - 171630274 I
e manLeu1.NW_012104165v1     2196971 9357 +   2316924 I
e chlSab2.chr17             28493046 139 -  71996105 I
e cerAty1.NW_012001495v1     2062536 472 -   2157725 I
e macNem1.NW_012011356v1     2182068 176 -   2996164 I
e macFas5.chr4              29189603 116 - 170955103 I
e rheMac8.chr4              29528430 176 + 172585720 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=71158.000000
s hg38.chr6_GL000254v2_alt    349601 125 +   4827813 atttttagtagagacggggtttcaccgtgttatccaggatgatctcgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggtgtgagccaccatgcccggccc
s panTro5.chr6              29324243 125 + 175400573 atttttagtagagacggggtttcactgtgttatccaggatgatctcgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggtgtgagccaccatgcccggccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29570011 125 + 173848474 atttttagtagagacggggtttcactatgttatccaggatgatctcgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggtgtgagccaccatgcccggccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5367627 125 +   6154872 atttttagtagagacggggtttcaccgtgttatccaggatgatctcgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggtgtgagccaccatgcccggccc
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1672563 301 -   2232465 I
e calJac3.chr4             171570568 160 - 171630274 I
e manLeu1.NW_012104165v1     2196971 9357 +   2316924 I
e chlSab2.chr17             28493046 139 -  71996105 I
e cerAty1.NW_012001495v1     2062536 472 -   2157725 I
e macNem1.NW_012011356v1     2182068 176 -   2996164 I
e macFas5.chr4              29189603 116 - 170955103 I
e rheMac8.chr4              29528430 176 + 172585720 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=16380.000000
s hg38.chr6_GL000254v2_alt    349726 4 +   4827813 aatt
s panTro5.chr6              29324368 4 + 175400573 aatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29570136 4 + 173848474 aatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5367752 4 +   6154872 aatt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29528606 4 + 172585720 aatt
i rheMac8.chr4             I 176 C 0
s macFas5.chr4              29189719 4 - 170955103 aatt
i macFas5.chr4             I 116 C 0
s macNem1.NW_012011356v1     2182244 4 -   2996164 aatt
i macNem1.NW_012011356v1   I 176 C 0
s cerAty1.NW_012001495v1     2063008 4 -   2157725 AATT
i cerAty1.NW_012001495v1   I 472 C 0
s chlSab2.chr17             28493185 4 -  71996105 aatt
i chlSab2.chr17            I 139 C 0
s manLeu1.NW_012104165v1     2206328 4 +   2316924 aatt
i manLeu1.NW_012104165v1   I 9357 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1672563 301 -   2232465 I
e calJac3.chr4             171570568 160 - 171630274 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=717590.000000
s hg38.chr6_GL000254v2_alt    349730 196 +   4827813 tgcagctatttca-attatgttttaaataccagaaaacataggaatattttctg-atataatgcacacg-aaaaaaCG------CAAACTCCGCTGGTAGTGAGTTGGGAGAAGTGCATAAAGGTAGATTGGGTAACAACAGAGATCCAGGTAAAAGGTG---------------------------------------------------------------------GATCCCTTTGTGTTCTTTCA-TTTTTTGTGT------TTTCTGAAGATATGA
s panTro5.chr6              29324372 196 + 175400573 tgcagctatttca-attatgttttaaataccagaaaacataggaatattttctg-atataatgcacacg-aaaaaaCC------CAAACTCCGCTGGTAGTGAGTTGGGAGAAGTGCATAAAGGTAGATTGGGTAACAACAGAGATCCAGGTAAAAGGTG---------------------------------------------------------------------GATCCCTTTGTGTTCTTTCA-TTTTTTGTGT------TTTCTGAAGATATGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29570140 186 + 173848474 tgcagctatttca-attatgttttaaataccagaaaacataggaatattttctg-atataatgcacacg-aaaaaaCC------CAAACTCTGCTGGTAGTGAGTTGGGAGAA----------GTAGATTGGGTAACAACAGAGATCCAGGTAAAAGGTG---------------------------------------------------------------------GATCCCTTTGTGTTCTTTCA-TTTTTTGTGT------TTTCTGAAGATATGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5367756 196 +   6154872 tgcagctatttca-attatgttttaaacaccagaaaacataggaatattttctg-atataaGGCACACG-AAAAAACC------CAAACTCCGCTGGTAGTGAGTTGGGAGAAGTGCATAAAGGTAGATTGGGTAACAACAGAGATCCAGGTAAAAGGTG---------------------------------------------------------------------GATCCCTTTGTGTTCTTTCG-TTTTTTGTGT------TTTCTGAAGATATGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29528610 198 + 172585720 tgcagctatttca-attatgttttaaataccagaaaacacgggagtattttctg-atataatgcacatgaaaaaaacC------CAAACTCCATTGGTAGTGAGTTGGGAGAAGTGCATAAAGGTAGATTGGGTAATAACAGAGATCCAAGTAAAAGGTG---------------------------------------------------------------------GGTCCCTTTGTGTTCTTTCCTTTTTTTGTGT------TTTATCAAGATATGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29189723 198 - 170955103 tgcagctatttca-attatgttttaaataccagaaaacacgggagtattttctg-atataatgcacatgaaaaaaacC------CAAACTCCATTGGTAGTGAGTTGGGAGAAGTGCATAAAGGTAGATTGGGTAATAACAGAGATCCAAGTAAAAGGTG---------------------------------------------------------------------GGTCCCTTTGTGTTCTTTCCTTTTTTTGTGT------TTTATCAAGATATGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2182248 198 -   2996164 tgcagctatttca-attatgttttaaataccagaaaacacgggagtattttctg-atacaatgcacatgaaaaaaacC------CAAACTCCATTGGTAGTGAGTTGGGAGAAGTGCATAAAGGTAGATTGGGTAATAACAGAGATCCAAGTAAAAGGTG---------------------------------------------------------------------GGTCCCTTTGTGTTCTTTCCTTTTTTTGTGT------TTTATCAAGATATGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2063012 189 -   2157725 TGCAGCTATTTCATATTATG--TTAAATACCAGAAAACAC-GGAGTATTTTCTG-ATATAATGCCAA--GAAAAAACC------CAAACTCCCGTTGTAGTGAGTTGGGAGAAGTGCAT-AAGGTAGATTGGGTAATAACAGAGATCCAAGTAAA--GTG---------------------------------------------------------------------GGTCCCTTTGTGTTCTTTCCTTTTTTTGTG-------TTTATC-AGATATGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28493189 197 -  71996105 tgcagctatttca-attatgttttaaataccagaaaacatgggagtattttctg-atataatgcacacgaaaaaaacC------CAAACTCCATTGGTAGTGAGTTGGGAGAAGTGCATAAAGGTAGATTGGGTAATAACAGAGGTCCAAGTAAAAGGTG---------------------------------------------------------------------GGTCCCTTTGTGTTCTTTCC-TTTTTTGTGT------TTTATCAAGATACGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2206332 198 +   2316924 tgcagctatttca-attatgttttaaataccagaaaacacgggagtattttctg-atataatgcacatgaaaaaaacC------CAAACTCCGTTGGTAGTGAGTTGGGAGAAGTGCATAAAGGTAGATTGGGTAATAACAGAGATCCAAGTAAAAGGTG---------------------------------------------------------------------GGTCCCTTTGTGTTCTTTCCTTTTTTTGTGT------TTTATCAAGATATGA
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1672864 272 -   2232465 tgaagctatttaa-attattgtttaaagac-------tactggaatattttcagaagataacacatatg-aaaaagtcaaattataaattgcattggcagtGATTTGAGAGGCATGCACAAAACTAGATTAGGTAATGATGTAGGTTCAGGTAAAACATGATAGTACCTGAAGTGTGAAGATGGGAAGAAGGTTAAAAAAAACAAAAACAGGAGGTTCAAAAGAGAGAAGATTGATATGTGttggtgatgattttgatatggcaaattacagagggcatgg
i otoGar3.GL873742         I 301 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570568 160 - 171630274 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=504383.000000
s hg38.chr6_GL000254v2_alt    349926 116 +   4827813 TCGATATAGG-AAAAATGATTCCCATTAACATTTCTATAATTAGCTCTATAATTAAGGGGTCATTCCACATGCCTGA--GGTAGAACTTGGGACAAATATGGAATTTGACAAAAGGGAA
s panTro5.chr6              29324568 116 + 175400573 TCGATATAGG-AAAAATGATTCCCATTAACATTTCTATAATTAGCTCTATAATTAAGGGGTCATTCCACATGCCAGA--GGTAGAACTTGGGACAAATATGGAATTTGACAAAAGGGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29570326 116 + 173848474 TCGATATAGG-AAAAATGATTCCCATTAACATTTCTATAATTAGCTCTATAATTAAGGGGTCATTCCACATGCCAGA--GGTAGAACTTGGGACAAATATGGAATTTGACAAAAGGGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5367952 116 +   6154872 TCGATATAGG-AAAAATGATTCCCATTAACATTTCTATAATTAGCTCTATAATTAAGAGGTCATTCCACATGCCTGA--GGTAGAACTTGGGACAAATATGGAATTTGACAAAAGGGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29528808 115 + 172585720 TCGATATAGG--AAAATGATTCCCATTAGCATTTCTATAATTAGCTCTATAATTAAGAGGACATTCCACATGCCTGA--GGTAGAAGTTGGGACAAATACGGAATTTGACAAAAGGGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29189921 115 - 170955103 TCGATATAGG--AAAATGATTCCCATTAGCATTTCTATAATTAGCTCTATAATTAAGAGGACATTCCACATGCCTGA--GGTAGAAGTTGGGACAAATACGGAATTTGACAAAAGGGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2182446 115 -   2996164 TCGATATAGG--AAAATGATTCCCATTAGCATTTCTATAATTAGCTCTATAATTAAGAGGATATTCCACATGCCTGA--GGTAGAAGTTGGGACAAATACGGAATTTGACAAAAGGGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2063201 113 -   2157725 TCAACATAGG--AAAATGATTCCTATTAGCATTTCTATAATTAGCTCTATAATTAAGAGGACATTCCACATGCCTGA--GGAAGAA-TTGGGACAAATACGGAATTTGACAAAAGGg-a
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28493386 116 -  71996105 TCGATATAGG-AAAAATGATTCCCATGAACATTTCTATAATTAGCTCTATAATTAAGAGGACATTCCACATGCCTGA--GGTAGAAGTTGGGACAAATACGGAATTTGACAAAAGGGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2206530 115 +   2316924 TCAATATAGG--AAAATGATTCCTATTAGCATTTCTATAATTAGCTCTATAATTAAGAGAACATTCCACATGCCTGA--GGTAGAAGTTGGGACAAATACGGAATTTGACAAAAGGGAA
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171570728 117 - 171630274 TCAATATGAGAAAAAATGGTTCTCATTAACATTTCTATAATTAGCTCTATAATTTAGAGGAGGCTCCACATACCTTA--GGTAGAAGTTGGGACAAATAAAGAATTTAACAAAAGAAGG
i calJac3.chr4             I 160 C 0
s otoGar3.GL873742           1673136 103 -   2232465 ------taaa-agatatagttcatggtttctggtctgta------tttgtaaataaaaggtaaatccattcattaaaatagtgaactttagaagaag---gttctttggtaaagggggg
i otoGar3.GL873742         C 0 I 923
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=277896.000000
s hg38.chr6_GL000254v2_alt    350042 70 +   4827813 AAACAAGGAGAAATGCTATCCA-GGGGAAT-AAAGAGATGAATTG-AAATAGAATTTGAAATAAAACTCAACA
s panTro5.chr6              29324684 70 + 175400573 AAACAAGGAGAAATGCTATCCA-GGGGAAT-AAAGAGATGAATTG-AAATAGAATTTGAAATAAAACTCAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29570442 70 + 173848474 AAACAAGGAGAAATGCTATCCA-GGGGAAT-AAAGAGATGAATTG-AAATAGAATTTGAAATAAAACTCAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5368068 71 +   6154872 AAACAAGGAGAAATGCTATCCA-GGGGAATCAAAGAGAAGAATTA-AAATAGAATTTGAAATAAAACTCAACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29528923 67 + 172585720 A---ATGGAgaaatgatatcca-gggtaat-aaagaaatgaattg-aaataaagtttgaaataaaaCTCAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29190036 67 - 170955103 A---ATGGAGAAATGATATCCA-GGGTAAT-AAAGAAATGAATTG-AAATAAAGTTTGAAATAAAACTCAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2182561 67 -   2996164 A---ATGGAGAAATGATATCCA-GGGTAAT-AAAGAAATGAATTG-AAATAAAGTTTGAAATAAAACTCAATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2063314 67 -   2157725 a---atggagaaatgatatcca-gggtaat-aaagaaatgaattg-aaataaaGTTTGAAATAAACCTCAATA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28493502 64 -  71996105 A---ATGGAGAAATGCTATCCA-GGGTAAT-AAAGAAATGAATTG-AAATAAAGTTTGAAATAAAACTCA---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2206645 67 +   2316924 A---ATGGAgaaatgatatcca-gggtaat-aaagaaatgaattg-aaataaagtttgaaataaaaCTCAATA
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171570845 71 - 171630274 AAACAAGGAGAAATACTATCTA-GAGGAAT-AAAGAGATGAATTGAAAATAAAATTTGAAATAAAACTCAACT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1674162 63 -   2232465 ---AAAAGTAGAATGTTTTGTATAGGTCAC-AAATGCATGAATTGAAAATAAGTTCTGAA------CTCAACA
i otoGar3.GL873742         I 923 T 878
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=29557.000000
s hg38.chr6_GL000254v2_alt    350112  7 +   4827813 GACATTT-----
s panTro5.chr6              29324754  7 + 175400573 GACATTT-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29570512  7 + 173848474 GACATTT-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5368139  7 +   6154872 GACATTT-----
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29528990  7 + 172585720 GATATTT-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29190103  7 - 170955103 GATATTT-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2182628  7 -   2996164 GATATTT-----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2063381  7 -   2157725 GATATTT-----
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28493566  6 -  71996105 -ATATTT-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2206712  7 +   2316924 GATATTT-----
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171570916  7 - 171630274 GACATTT-----
i calJac3.chr4             C 0 T 355
s otoGar3.GL873742           1673347 12 -   2232465 GACATCTATGTT
i otoGar3.GL873742         T 878 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=216158.000000
s hg38.chr6_GL000254v2_alt    350119 53 +   4827813 CTTCAGTCTC-----------TTCTTTTTCCACTTATTTGAAATGTCATCTAAATATTATTATA
s panTro5.chr6              29324761 53 + 175400573 CTTCAGTCTC-----------TTCTTTTTCCACTTATTTGAAATGTCATTTAAATATTATTATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29570519 53 + 173848474 CTTCAGTCTC-----------TTCTTTTTCCACTTATTTGAaatgtcatttaaatattattata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5368146 52 +   6154872 CTTCAGTCTC-----------TTCTTTTTCCACTTATTTGAAATGTCATTTAAATATtataat-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29528997 53 + 172585720 CTTCAGTCTC-----------TTCTTTTTCCACTTATTTGAAATGTCATTTAAATATTATTATA
i rheMac8.chr4             C 0 I 298
s macFas5.chr4              29190110 53 - 170955103 CTTCAGTCTC-----------TTCTTTTTCCACTTATTTGAAATGTCATTTAAATATTATTATA
i macFas5.chr4             C 0 I 16
s macNem1.NW_012011356v1     2182635 53 -   2996164 CTTCAGTCTC-----------TTCTTTTTCCACTTATTTGAAATGTCatttaaatattattata
i macNem1.NW_012011356v1   C 0 I 15364
s cerAty1.NW_012001495v1     2063388 53 -   2157725 CTTCAGTCTC-----------TTCTTTTTCCACTTATTTGAAATGTCATTTAAATATTATTATA
i cerAty1.NW_012001495v1   C 0 I 356
s chlSab2.chr17             28493572 53 -  71996105 CTTCAGTCTC-----------TTCTTTTTCTACTTATTTGAAATGTCATTTAAATATtattata
i chlSab2.chr17            C 0 I 322
s manLeu1.NW_012104165v1     2206719 53 +   2316924 CTTCAGTCTC-----------TTCTTTTTCCACTTATTTGAAATGTCATTTAAATATTATTATA
i manLeu1.NW_012104165v1   C 0 T 5856
s otoGar3.GL873742           1673359 60 -   2232465 TTTCATTTTCTCATGACTTTTTTTCTTTTGCAGTTATTCAGTTTGCTCTC----CATCATTGTA
i otoGar3.GL873742         C 0 I 1
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570923 355 - 171630274 T
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=18140.000000
s hg38.chr6_GL000254v2_alt    350172 55 +   4827813 ATTATATATAATATAAT---------------TGTAATTGTATA------------TAAGATAATTATA----ATTATA-TAATATA
s panTro5.chr6              29324814 59 + 175400573 ATTATATATAATATAAT---------------TGTAATTGtata------------taagataattatataatataata-atatata
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29570572 59 + 173848474 attatatataatataat---------------tgtaattgtata------------taagataattatataagataatt-atatata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5368198 46 +   6154872 ----tatatgatataat---------------tataattgt-----------------aaataattata----attata-taatata
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29190179 84 - 170955103 ATTATACAACATATAATTATATTATCTAATTATATAATTATATAACATAAAATTATTATCATAATTATATA--ATTATA-TAACATA
i macFas5.chr4             I 16 I 203
s otoGar3.GL873742           1673420 63 -   2232465 GGTGTATGTGATAGGAT---------GTGGTACATGTTTGGATT------------AAAAAAAGACACAT---ATACTAGGGATATG
i otoGar3.GL873742         I 1 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570923 355 - 171630274 T
e manLeu1.NW_012104165v1     2206772 5856 +   2316924 T
e chlSab2.chr17             28493625 322 -  71996105 I
e cerAty1.NW_012001495v1     2063441 356 -   2157725 I
e macNem1.NW_012011356v1     2182688 15364 -   2996164 I
e rheMac8.chr4              29529050 298 + 172585720 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=32039.000000
s hg38.chr6_GL000254v2_alt    350227  68 +   4827813 ATTATATATAAT--------ATAATAATATATA--ATATAATAATATATAA---------------------TATAATTATATA---------------------------------------TAATATATCATTATC
s panTro5.chr6              29324873  67 + 175400573 ataatatataat-----tatataataatatata--atataattatat-------------------------tataattatata---------------------------------------TAATATATCATTATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29570631  72 + 173848474 ataatatataatataattatattataatatata--atataattatat-------------------------tataattatata---------------------------------------taatatatcattatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5368244  55 +   6154872 attatatataat--------ataataatatata--atatta-------------------------------tataattatata---------------------------------------taatatatc---atc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29529348  59 + 172585720 attatatataat--------ataattatatctaatatataattataa-------------------------tataattatatc---------------------------------------taatatat-------
i rheMac8.chr4             I 298 C 0
s macFas5.chr4              29190466  59 - 170955103 ATTATATATAAT--------ATAATTATATCTAATATATAATTATAA-------------------------TATAATTATATC---------------------------------------TAATATAT-------
i macFas5.chr4             I 203 C 0
s otoGar3.GL873742           1673483 121 -   2232465 ATTGTTTTCATT--------AATATTAGGCATG--TTGTAAGTCTGACTACTGTTTTGCAAAAACCAACTTTTAAAATCATATGGGTTTCCCCTTTTCATTTATTTGAAAGGTCACATTTTGTGAACACAT-------
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570923 355 - 171630274 T
e manLeu1.NW_012104165v1     2206772 5856 +   2316924 T
e chlSab2.chr17             28493625 322 -  71996105 I
e cerAty1.NW_012001495v1     2063441 356 -   2157725 I
e macNem1.NW_012011356v1     2182688 15364 -   2996164 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=40541.000000
s hg38.chr6_GL000254v2_alt    350295 12 +   4827813 ATAATTATATGT
s panTro5.chr6              29324940 12 + 175400573 ATAATTATATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29570703 12 + 173848474 ataattatatgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5368299 12 +   6154872 ataattatatGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29529407 10 + 172585720 --aattatatGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29190525 10 - 170955103 --AATTATATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2198052 12 -   2996164 ATAATTATATGT
i macNem1.NW_012011356v1   I 15364 C 0
s cerAty1.NW_012001495v1     2063797 12 -   2157725 ataattatatGT
i cerAty1.NW_012001495v1   I 356 C 0
s chlSab2.chr17             28493947 12 -  71996105 ATAATTATATGT
i chlSab2.chr17            I 322 C 0
s otoGar3.GL873742           1673604 12 -   2232465 ATATACATATGT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570923 355 - 171630274 T
e manLeu1.NW_012104165v1     2206772 5856 +   2316924 T
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=153389.000000
s hg38.chr6_GL000254v2_alt    350307  46 +   4827813 GATATA-GAACTA------------------------------TATATAATA--------TATAATTATATTAC------------------------------ATCGTCAACCT
s panTro5.chr6              29324952  46 + 175400573 GATATA-GAACTA------------------------------TATATAATA--------TATAATTATATTAC------------------------------ATCGTCAACCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29570715  45 + 173848474 gatata-gaacta------------------------------tatataata--------tataattatatTCC------------------------------A-CGTCAACCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5368311  46 +   6154872 GATATA-GAACTA------------------------------TATATAATA--------TATAATTATATTAC------------------------------ATCGTCAACCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29529417  46 + 172585720 GATATA-GAACTA------------------------------CATATAATA--------TATAATTATATTAC------------------------------ATCACCAGCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29190535  46 - 170955103 GATATA-GAACTA------------------------------CATATAATA--------TATAATTATATTAC------------------------------ATCACCAGCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2198064  46 -   2996164 GATATA-GAACTA------------------------------CATATAATA--------TATAATTATATTGC------------------------------ATCACCAGCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2063809  46 -   2157725 GATATA-GAACTA------------------------------CATATAATA--------TATAATTATATTAC------------------------------ATCACCAGCCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28493959  46 -  71996105 GATATA-GAACTA------------------------------TATATAAAA--------TATAATTATATTAC------------------------------ATGGCCAGCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2200916  46 +   2316924 GATATA-GAACTA------------------------------CATATAATA--------TATAATTATATTAC------------------------------ATCACCAGCCT
i manLeu1.NW_012104165v1   T 5856 C 0
s otoGar3.GL873742           1673616 115 -   2232465 TGTATATGAACCATTTTCTGTTTTTATGTGTTTTATTTTTTACCATTTGATGCTACCACTTATGATTAAATTATTCTGCCTTGCTTACCAGATAAAGTTCAAAAATTTCCAGCTT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            339418 8121 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570923 355 - 171630274 T
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=548951.000000
s hg38.chr6_GL000254v2_alt    350353 129 +   4827813 CAT---CTTGCCTGGT---TTT-------GTATTGTTT----------AACTG--C--TAAATTACTTGTAA-TGATGAAATGCTTTGTTTTGTAAAGCTTT---CTCTGTTGCCTAAAATGTTGCCTCATCTGTGTCCTTACATTACTAACTGTAAACC
s panTro5.chr6              29324998 131 + 175400573 CAT---CTTGCCTGGT---TTT-------GTATTGTTT----------AACTGTGC--TAAATTACTTGTAA-TGATGAAATGCTTTGTTTTGTAAAGTTTT---CTCTGTTGCCTAAAATGTTGCCTCATCTGTGTCCTTACATTACTAACTGTAAACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29570760 131 + 173848474 CAT---CTTGCCTGGT---TTT-------GTATTGTTT----------AACTGTGC--TAAATTACTTGTAA-TGATGAAATGCTTTGTTTTGTAAAGCTTT---CTCTGTTGCCTAAAATGTTGCCTCATCTGTGTCCTTACATTACTAACTGTAAACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5368357 129 +   6154872 CAT---CTTGCCTGGT---TTT--------TATTGTTT----------AACTGTGC--TAAATTACTTGTAA-TGATGAAATG-TTTGTTTTGTAAAGCTTT---CTCTGTTGCCTAAAATGTTGCCTCATCTGTGTCCTTACATTACTAACTGTAAACC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29529463 131 + 172585720 CAT---CTTGCATGTT---TTT-------GTATTGTTT----------AACTGTAC--TAAATTGCTTGTAA-TGATGAAATGCTTTGTTTTGTAAACCTTT---CTCTGTTGCCCAAAATGTTGCCTCATCTGTGTCCTTACATTACTAACGGTAAACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29190581 131 - 170955103 CAT---CTTGCATGTT---TTT-------GTATTGTTT----------AACTGTAC--TAAATTGCTTGTAA-TGATGAAATGCTTTGTTTTGTAAACCTTT---CTCTGTTGCCCAAAATGTTGCCTCATCTGTGTCCTTACATTACTAACGGTAAACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2198110 131 -   2996164 CAT---CTTGCATGTT---TTT-------GTATTGTTT----------AACTGTAC--TAAATTGCTTGTAA-TGATGAAATGCTTTGTTTTGTAAACCTTT---CTCTGTTGCCCAAAATGTTGCCTCATCTGTGTCCTTACATTACTAACGGTAAACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2063855 124 -   2157725 CAT---CTTGCATGTT---TTT-------GTA---TTT----------AACTGTAC--TAAATTGCTTGTAA-TGATGAAATGCTTTGTTTTGTAA--CCTT---CTCTGTTG-CCAAAATGTTGCCTCATCTGTGTCCTTACA-TAGTAACGGTAAACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28494005 131 -  71996105 CAT---CTTGCATGTT---TTT-------GTATTGTTT----------AACTGTAC--TAAATTACTTGTAA-TGATGAAATGCTTTGTTTTGTAAACCTTT---CTCTGTTGCCCAAAATGTTGCCTCATCTGTGTCCTTACATTACTAACGGTAAACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2200962 131 +   2316924 CAT---CTTGCATGTT---TTT-------GTATTGTTT----------AACTGTAC--TAAATTGCTTGTAA-TGATGAAATGCTTTGTTTTGTAAACCTTT---CTCTGTTGCCCAAAATGTTGCCTCATCTGTGTCCTTACATTAGTAACGGTAAACA
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1673731 154 -   2232465 CATATACTTTCTTTTT---TTTTTTTTTGGTACTTTTTGTTTTGATCCAGCTACTCCTTAATTTATTTGTAATTTCTAAAATGCTTTTTTGGGGGTAATTTTTTCCTCTATTGCCTAAAATGTTGCCTCATCTATGTA---AAATTACCAACTGTAAAAA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            347539 134 -    859332 CAT---CTTGTATGTCCCATGT-------GCACTGTTT---------TAACCAAAC--TAAATTACTCATAATTTCTGACAAGCTTTGTTGTGTAA--TCCC---ACTTATtgcctaaaatgttgcctcttctatgtccttacattgccgaatccagata
i dasNov3.JH570037         I 8121 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171570923 355 - 171630274 T
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=1818673.000000
s hg38.chr6_GL000254v2_alt    350482 354 +   4827813 ATCATTTAAATGTCTCAGTT------TA--------------------------------------------------------------------------------AGAATCATTGCCTTCTGGAAC-----------------------------------------------------------------------------TAGCACATTTCTTCAGCAGAGGAACTGT-GA-TATTTC-TCCTCTGGACTACTGCTGTCTTGTGAACAATAAATGTTTATTGAATGACTACCACAGATAAAGAGTAAGCTAATTCAGGTCAATATGAG-AAAAAAGGATTCCCATTAACATTTCTA----TAATTAGCTCTATAATTTAGAAAAGATGCCA-CATACCTGAGGTAGAACTTGGGACAAATAAGGAATTTAACAAAA--GGGAAGAAAGGATAAATGCTATCCGGAGG-AATAAAGAGATG-AATTGAAAATAGAATTTGAAATAAAACTCAACTGACATTTAAG
s panTro5.chr6              29325129 354 + 175400573 ATCATTTAAATGTCTCAGTT------TA--------------------------------------------------------------------------------AGAATCATTGCCTTCTGGAAC-----------------------------------------------------------------------------TAGCACATTTCTTCAGCAGAGGAACTGT-GA-TATTTC-TCCTCTGGACTACTGCTGTCTTGTGAACAATAAATGTTTATTGAATGACTACCACAGATAAAGAGTAAGCTAATTCAGGTCAATATGAG-AAAAAAGGATTCCCATTAACATTTCTA----TAATTAGCTCTATAATTTAGAAAAGATGCCA-CATACCTGAGGTAGAACTTGGGACAAATAAGGAATTTAACAAAA--GGGAAGAAAGGATAAATGCTATCCGGAGG-AATAAAGAGATG-AATTGAAAATAGAATTTGAAATAAAACTCAACTGACATTTAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29570891 354 + 173848474 ATCATTTAAATGTCTCAGTT------TA--------------------------------------------------------------------------------AGAATCATTGCCTTCTGGAAC-----------------------------------------------------------------------------TAGCACATTTCTTCAGCAGAGGAACTGT-GA-TATTTC-TCCTCTGGACTACTGCTGTCTTGTGAACAATAAATGTTTATTGAATGACTACCACAGATAAAGAGTAAGCTAATTCAGGTCAATATGAG-AAAAAAGGATTCCCATTAACATTTCTA----TAATTAGCTCTATAATTTAGAAAAGATGCCA-CATACCTGAGGTAGAACTTGGGACAAATAAGGAATTTAACAAAA--GGGAAGAAAGGATAAATGCTATCCAGAGG-AATAAAGAGATG-AATTGAAAATAGAATTTGAAATAAAACTCAACTGACATTTAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5368486 355 +   6154872 ATCATTTAAATGTCTCCGTT------TA--------------------------------------------------------------------------------AGGATCATTGCCTTCTGGAAC-----------------------------------------------------------------------------TAGCACATTTCTTCAGCAGAGGAACTGT-GA-TATTTC-TCCTCTGGACTACTGCTGTCTTGTGAACAATAAATGTTTATTGAATGACTACCACAGATAAAGAGTAAGCTAATTCAGTTCAATATGAG-AAAAAAGGATTCCCATTAACATTTCTA----TAATTAGCTCTATAATTTAGAAAAGATTCCA-CATACCTGAGGTGGAACTTGGGACAAATAAGGAATTTAACAAAAG-GGGAAGAAAGGATAAATGCTATCCAGAGG-AATAAAGAGATG-AATTGAAAATACAATTTGAAATAAAACTCAACTGACATTTAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29529594 355 + 172585720 ATCATTCAAATGTCTCAGTT------TA--------------------------------------------------------------------------------AGGATCATTGCCTTCTGGAAC-----------------------------------------------------------------------------TAGCACATTTCTTCAGCAGAGGAACTGT-GA-TATTTC-TTCTCTGGACTACTGCTGTCTTGTGAACAATAAACGTTTATTGAATGACTACCACAAATAAAGAGTAAGCTAATTCAGTTCAATATGAG-AAAAAATGATTCCCATTAACATTTCTA----TAATTAGCTGTATAATTTAGAAAAGATTCCA-CATACCTGAGGTAGAACTTGGGACAAATAAGGAATTTAACAAAAG-GGGAAGAAAGGAGAAATGCTATCCAGAGG-AATAAACGGATG-AATTGAAAATAGAATTTGAAATAAAACTCAACTGACATTTAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29190712 355 - 170955103 ATCATTCAAATGTCTCAGTT------TA--------------------------------------------------------------------------------AGGATCATTGCCTTCTGGAAC-----------------------------------------------------------------------------TAGCACATTTCTTCAGCAGAGGAACTGT-GA-TATTTC-TTCTCTGGACTACTGCTGTCTTGTGAACAATAAACGTTTATTGAATGACTACCACAAATAAAGAGTAAGCTAATTCAGTTCAATATGAG-AAAAAATGATTCCCATTAACATTTCTA----TAATTAGCTGTATAATTTAGAAAAGATTCCA-CATACCTGAGGTAGAACTTGGGACAAATAAGGAATTTAACAAAAG-GGGAAGAAAGGAGAAATGCTATCCAGAGG-AATAAACGGATG-AATTGAAAATAGAATTTGAAATAAAACTCAACTGACATTTAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2198241 355 -   2996164 ATCATTCAAATGTCTCAGTT------TA--------------------------------------------------------------------------------AGGATCATTGCCTTCTGGAAC-----------------------------------------------------------------------------TAGCACATTTCTTCAGCAGAGGAACTGT-GA-TATTTC-TTCTCTGGACTACTGCTGTCTTGTGTACAATAAACGTTTATTGAATGACTACCACAAATAAAGAGTAAGCTAATTCAGTTCAATATGAG-AAAAAATGATTCCCATTAACATTTCTA----TAATTAGCTGTATAATTTAGAAAAGATTCCA-CATACCTGAGGTAGAACTTGGGACAAATAAGGAATTTAACAAAAG-GGGAAGAAAGGAGAAATGCTATCCAGAGG-AATAAACGGATG-AATTGAAAATAGAATTTGAAATAAAACTCAACTGACATTTAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2063979 352 -   2157725 ATCATTCAAATGTCTCAGTT------TA--------------------------------------------------------------------------------AGGATCATTGCCTTCTGGAAC-----------------------------------------------------------------------------TAGCACATTTCTTCAGCAGAGCAACTGT-GA-TATTTCTTTCTCTGGACTACTGCTGTCTTGTGAACAATAAACGTTTATTGAATGACTACCACAAAT-AAGAGTAAGCTAATTCAGTTC-ATATGAG-AAAAAATGATTCCCATTAACAATTCTA----TAATTAGCTGTATAA-TTAGAAAAGATTCCACCATACCTGAGGTAGAACTTGGGACAAATAAGGAATTTAACAAA---GGGGAAGAAGGAGAAATGCTATCCAGAGG-AATAAACAGATGAAATTGAAAATAGAATTTGAAATAAAA-TCAACTGACATTTAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28494136 356 -  71996105 ATCATTCAAATGTCTCAGTT------TA--------------------------------------------------------------------------------AGGATCATTGACTTCTGGAAC-----------------------------------------------------------------------------TAGCACATTTCTTCAGCAGAGGAACTGT-GA-TATTTC-TTCTCTGGACTACTGCTGTCTTGTGAACAATAAACGTTTATTGAATGACTACCACAAATAAAGAGTAAGCTAATTCAGTTCAATATGAGAAAAAAATGATTCCCATTAACATTTCTA----TAATTAGCTCTATAATTTAGAAAAGATTCCA-CATACCTGAGGTAGAACTTGAAACAAATAAGGAATTTAACAAAAG-GGGAAGAAAGGAGAAATCCTATCCAGAGG-AATAAACAGATG-AATTGAAAATAGAATTTGAAATAAAACTCAACTGACATTTAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2201093 355 +   2316924 ATCATTCAAATGTCTCAGTT------TA--------------------------------------------------------------------------------AGGATCATTGCCTTCTGGAAC-----------------------------------------------------------------------------TAGCACATTTCTTCAGCAGAGCAACTGT-GA-TATTTC-TTCTCTGGACTACTGCTGTCTTGTGGACAATAAACGTTTATTGAATGACTACCACAAATAAAGAGTAAGCTAATTCAGTTCAATATGAG-AAAAAATGATTCCCATTAACATTTCTA----TAATTAGCTGTATAATTTAGAAAAGATTCCA-CATACCTGAGGTAGAACTTGGGACAAATAAGGAATTTAACAAAAG-GGGATGAAAGGAGAAATGCTATCCAGAGG-AATAAACAGATG-AATTGAAAATAGAATTTGAAATAAAACTCAACTGACATTTAAG
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171570568 358 - 171630274 ATCATGTAAGTGTCTCAGTTTAAGGGTA--------------------------------------------------------------------------------AGGATCATTGCCATCCGGACC-----------------------------------------------------------------------------TAGCACATTTCTTCAGTAGAGGAACTGA-GA-TACTCC-TCCCCTGGA-TACTGCTGTCTTGTG---AATAAATGCTTGTTGAGTGACTACCCCGGAGAAAGAGTAAGCTAATTCAATTCAATATGAG-AAAAAATGGTTCTCATTAACATTTCTA----TAATTAGCTCTATAATTTAGAGGAGGCTCCA-CATACCTTAGGTAGAAGTTGGGACAAATAAAGAATTTAACAAAAGAAGGAAACAAGGAGAAATACTATCTAGAGG-AATAAAGAGATG-AATTGAAAATAAAATTTGAAATAAAACTCAACTGACATTTAAG
i calJac3.chr4             T 355 C 0
s otoGar3.GL873742           1673885 350 -   2232465 ATCATTTACATGTCTCAAAT------TA--------------------------------------------------------------------------------AGGGTTATTTCCTTCAGGAAC-----------------------------------------------------------------------------TAGAGCATATTTTTAGTAGAAGAACTGTAGT-TGTTTT-TCCTTTGGTCTACTGCTGTCTTGTGAACAAGAACTGTTTACTAAATAACTACCA-AAATAA--AATAAATTCATTTAGATCAATATGAG-AAAAAATTATTGCTGCTATACTATCTATAAGTAATTAGCTTTATAATTTAGAGGAGATTCCA-CATGCCTGGGACAGAACTTGAGACAATTAAAGAATTTGAAAAAA--GAGCAAAAAGTAG-AATGTTTTGTATAGGTCACAAATGCATG-AATTGAAAATAAGTTCTG------AACTCAACAGACATTTCAG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            347673 432 -    859332 atcatttaggtgtctcagtt------caatattatttccccaagaaAAATCAATAAGGACAATTCTCCCATTGTACTACTTTATGTGGTGCTCTGCACATGTTTCCATAGAATCATAGAATCCCTTAACTCCCGCTGCACATGGCATTTGTCAACCTGAAAAAAAAACCAAAATACAAAAGAAAAACATCTGCCACTCCTGATTATTAGAACATTTCTTTAGTAAAGGAATTGT-AATTGTTTT-TCTTCTCGTGTCATGCTATCTAGTGAATAATAAATATTTGTTGAATGAGTACCC------AAAAATAA-TTAATTCATACTAACGTTAG-GAAAAA-AATTCCCATTGACGTTCTTATAAATAATTAGCTTTATAATTTAGAGGCGATCCTT--------GTGGCAGAACTTGGGACCAATGAAGAATTTGACAGAA--GAG------------------------GG-AATAAAAGGA----------------------------------------------
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=978583.000000
s hg38.chr6_GL000254v2_alt    350836 233 +   4827813 GTTTCCAGATTGAGATGCAC-ACACTTAGCTGGTT-TAAAACCAGCTAGATTggttgggcgc-agtggctcat-gcctgtaat-cccagcaatttaggaggctgagatgggtggagcacctgaggtcaggagttcgagaccagcct-ggccaacacaaagaaaccccgtttctactaaaaatacaaaaaattagctgggcatggtggcgggcatccgtaatcccagctacttggaaggc
s panTro5.chr6              29325483 233 + 175400573 GTTTCCAGATTGAGATGCAC-ACACTTAGCTGGTT-TAAAACCAGCTAGATTggttgggcgc-agtggctcat-gcctgtaat-cccagcaatttaggaggccgagatgggtggagcacctgaggtcaggagttcgagaccagcct-ggccaacacaaagaaaccccgtttctactaaaaatacaaaaaattagctgggcatggtggcgggcatccgtaatcccagctacttggaaggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29571245 233 + 173848474 GTTTCCAGATTGAGACGCAC-ACACTTAGCTGGTT-TAAAACCAGCTAGATTggttgggcgc-agtggctcat-gcctgtaat-cccagcaatttaggaggccgagatgggtggagcacctgaggtcaggagttcgaggccagcct-ggccaacacaaagaaaccccgtttctactaaaaatacaaaaaattagctgggcatggtggcgggcatccgtaatcccagctacttggaaggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5368841 233 +   6154872 GTTTCCAGATTGAGATGCAC-ACACTTAGCTGGTT-TAAAACCAGCTAGATTggttgggcgc-agtggctcat-gcctgtaat-cccagcaatttgggaggccgagatgggtggagcacctgaggtcaggagtttgagaccagcct-ggccaacacaaagaaaccccgtttctactaaaaatacaaaaaattagctgggcgtggtggtgggcatctgtaatcccagctacttggaaggc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29529949 233 + 172585720 GTTTCCAGATTGAGATGCAC-ACACTTAGTAAGTT-TAAAACCAGCTAGAATggttgggtgc-agcggctcat-gcctgtaat-cccagcaatttgggaggccaagatgggtggatcacctgaggtcaggagttcgagaccagcct-ggccaacacgatgaaaccccgtttctactaaaaatacaaaaaattagctgggcgtggtggtgggcatctgtaatcccagctactaggaaggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29191067 232 - 170955103 GTTTCCAGATTGAGATGCAC-ACACTTAGTAGGTT-TAAAACCAGCTAGAATggttgggcgc-agtggctcat-gcctgtaat-cccagcaatttgggaggccaagatgggtggatcacctgaggtcaggagttcgagaccagcct-ggccaacatgatgaaa-cccgtttctactaaaaatacaaaaaattagctgggcgtggtggtgggcatctgtaatcccagctactaggaaggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2198596 233 -   2996164 GTTTCCAGATTGAGATGCAC-ACACTTAGTAGGTT-TAAAACCAGCTAGAATggttgggcgc-agtggctcat-gcctgtaat-cccagcaatttgggaggccaagatgggtggatcacctgaggtcaggagttcgagaccagcct-ggccaacacgatgaaaccccgtttctactaaaaatacaaaaaattagctgggcgtggtggtgggcatctgtaatcccagctactaggaaggc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2064331 234 -   2157725 GGTTTCCGATTGAGATGCACAACACTTAGCAGGTTGTAAAACCAGC-AGAATggttgggcgcaagtggctcatagcctgtaatccccagcaatttgggaggccaagatggttggatcacctgaggtcaggagttcgagaccagcctgggccaacac--tgaaa-cccctttctact-aaaatacaaaaaattagctgggcgtggtggcgggcatctgtaatcccagctactaggaaggc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28494492 233 -  71996105 GTTTCCAGATTGAGATGCAC-ACACTTAGCAGGTT-TAAAACCAGCTAGAGTggttgggcgc-agtggttcgt-gcctgtaat-cccagcaatttgggaggccaagatgggtggatcacctgaggtcaggagttcgagaccagcct-ggccaacacgatgaatccctgtctctactaaaaatacaaaaaattagctgggcatggtggtgggcatctgtaatcccagctactcggaaggc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2201448 233 +   2316924 GTTTCCAGATTGAGATGCAC-ACACTTAGCAGGTT-TAAAACCAGCTAGAATggttgggcgc-agtggctcat-gcctgtaat-cccagcaatttgggaggccaagatgggtggatcacctgaggtcaggagttcgagaccagcct-ggccaacacgatgaaaccccgtttctactaaaaatacaaaaaattagctgggcgtggtggtgggcatctgtaatcccagctactaggaaggc
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171570926 233 - 171630274 GTTTCAAGATTGAGTTGGAC-ACACTTAGCTGGTT-TAAAACCATCTAGGTTggccaagcgt-ggtggctcac-acctgtaat-gccagcagcttaggaggccaaggtgggtggatcacctgaagttgggagtttgagaccatcct-ggccaacaagatgaacccccatttcttctaaaaatacaaaaaattagctgggtgtggtggtgcatgcctgtaatcgcagctgctcaggaggc
i calJac3.chr4             C 0 C 0
s dasNov3.JH570037            348105 112 -    859332 ------------------------------------------------------------------------------GAAAT-----GCTGTCTATAAGG----AATAAAGGGAAGAATTGAA---AAGACTTGGAAGTGAACCT-TAACTAAACATTTAGGC-----TTCTA----------------------GGACAAGATG---------TATACTCTTAGTTACTTTAAAAGT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1674235   0 -   2232465 C
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=474126.000000
s hg38.chr6_GL000254v2_alt    351069 122 +   4827813 tgaagcaggagaatcacttgaacccaggaggtgga-ggttgcagtgagctgagatcgtgccattgcattccagcctgggcaacaag-agtaaaattcattctc------aaacaaaacaaaaacaaa---------GCC
s panTro5.chr6              29325716 122 + 175400573 tgaagcaggagaatcgcttgaacccaggaggtgga-ggttgcagtgagctgagatcgtgccattgcattccagcctgggcaacaag-agtaaaattcgttctc------aaacaaaacaaaaacaaa---------GCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29571478 115 + 173848474 tgaagcaggagaatcgcttgaac-------gtgga-ggttgcagtgagctgagatcgtgccattgcattccagcctgggcaacaag-agtaaaattcgttctc------aaacaaaacaaaaacaaa---------GCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5369074 122 +   6154872 tgaagcaggagaatcgcttgaacccaggaggtgga-ggttgcagtgagctgagatcgtgccattgcattccagcctgggcaacaag-agtaaaatttgttctc------aaacaaaacaaaaacaaa---------CCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29530182 122 + 172585720 taaagcaggagaatcgcttgaacccaggaggtgga-ggttgcagtgagccgagatcgtgccattgcactccagccttggcaacaag-agtgaaattcattctc------aaacaaaacaaaaacaaa---------CCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29191299 122 - 170955103 taaagcaggagaatcgcttgaacccaggaggtgga-ggttgcagtgagccgagatcgtgccattgcactccagccttggcaacaag-agtgaaattcattctc------aaacaaaacaaaaacaaa---------CCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2198829 122 -   2996164 taaagcaggagaatcgcttgaacccaggaggtgga-ggttgcagtgagctgagatcgtgccattgcactccagccttggcaacaag-agtgaaattcattctc------aaacaaaacaaaaacaaa---------CCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2064565 118 -   2157725 t-gagcaggagaatcgcttgaacccaggatgtggagggttgcagtgagctgagatcatg-cattgcactccagccttggcaacaagaagtgaaattcattgtc------aaacaaaacaaaaCCA-------------C
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28494725 122 -  71996105 tgaagcaggagaatcgcttgatcccaggaggtgga-ggctgcagtgagctgagatcgtgccattgcactccagcctgggcaacaag-agtgaaattcattctc------aaacaaaacaaaaacaaa---------CCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2201681 118 +   2316924 tgaagcaggagaatcgcttgaacccaggatgtgga-ggttgcagtgagctgagatcatgccattgcactccagccttggcaacaag-agtgaaattcattgtc------aaacaaaacaa----aaa---------CCC
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171571159 137 - 171630274 tgaagcaggataattgcttgaacccaggaggtgga-ggttgcggtgagccgggattgtgccattgcactccagcctgggcaacaag-agtaaaactccatctcaaaatgaaacgaaacaaaaacaaaaacaaaaaCCCC
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1674235  37 -   2232465 -------------------------------------GTTTCT-----------------------------------------AG-AATGAGAT--------------GCGCATACTTAGGTTAAA---------GGT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            348217   0 -    859332 C
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=1756216.000000
s hg38.chr6_GL000254v2_alt    351191 345 +   4827813 AGCTAGATTGAAGCC--AAATTACATACCAAAAACAGTTCTGAAAAGGTGCATATGATGAATTTTATC----------AAGAGATCAGAGGGTTCAAAGTGTTTGAAGACTTTGATTCTGATGGAATAATTTTTGGCTTGGAATAACTGGTAATTTAATTATAAGGATATTAAAATCCCTAACTAAAGGCGTAGACAGGATGGTTATAGAAT-AATAGTATACAAGTGGAA-GGCAATCCATCAAAGTCTCCTGACTACCCTGAAGTTGATAGGAAATTGACATGACTTGTCTCAAGGAACAGAGTACATTGGGGGAACTTCTGAAAAGAAAGGAGTTTCTAACTTTGAAGACATGTCA
s panTro5.chr6              29325838 345 + 175400573 AGCTAGATTGAAGCC--AAATTACATACCGAAAACAGTTCTGAAAAGGTGCATATGATGAATTTTATC----------AAGAGATCAGAGGGTTCAAAGTGTTTGAAGACTTTGATTCTGATGGAATAATTTTTGGCTTGGAATAACTGGTAATTTAATTATAAGGATATTAAAATCCCTAACTAAAGGCGTAGACAGGATGGTTATAGAAT-AATAGTATTCAAGTGGAA-GGCAATCCATCAAAGTCTCCTGACTACCCTGAAGTTGATAGGAAATCGACATGACTTGTCTCAAGGAACAGAGTACATTGGGGGAACTTCTGAAAAGAAAGGAGTTTCTAACTTTGAAGACATGTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29571593 345 + 173848474 AGCTAGATTGAAGCC--AAATTACATACCGAAAACAGTTCTGAAAAGGTGCATATGATGAATTTTATC----------AAGAGATCAGAGGGTTCAAAGTGTTTGAAGACTTTGATTCTGATGGAATAATTTTTGGCTTGGAATAACTGGTAATTTAATTATAAGGATATTAAAATCCCTAACTAAAGGCGTAGACAGGATGGTTATAGAAT-AATAGTATGCAAGTGGAA-GGCAATCCAACAAAGTCTCCTGACTACCCTGAAGTTGATAGGAAATTGACATGACTTGTCTCAAGGAACAGAGTACATTGGGGGAACTTCTGAAAAGAAAGGAGTTTCTAACTTTGAAGACATGTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5369196 346 +   6154872 AGCTAGATTGAAGCC--AAATTACATACCAAAAACAGTTCTGAAAAGGTGCATATGATTAATTTTATC----------AAGAGATCAGAGGGTTCAAAGTGTTTGAAGACTTTGATTCTGATGGAATAATTTTTGGCTTGGAATAACTGGTAATTTAATTATAAGGATATTAAAATCCCTAACTAAAGGCGTAGACAGGATGGTTATAGAAT-AATAGTATACAAGTGGAAGGGCAATCCATCAAAGTCTCCTGACTACCCTGAAGTTGATAGGAAATTGACGTGACTTGTCTCAAGGAACAGAGTACATTGGGGGAACTTCTGAAAAGAAAGGAGTTTCTAACTTTGAAGACGTGTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29530304 346 + 172585720 AGCTAGATTGAAGCC--AAATTACATACCTAAAACAGTTCTGAAAAGGTGCATATGATGAATTTTATC----------AAGAGATCAGAGGGTTCAAAGTGTTTGAAGACTTTGATTCTGATGGAATAATTTTTGGCTTGGAATAACTGGTAATTTAATTATAAAGATATTAAAATCCCTAACTAAAGGCATAGACAGGATGGTTGTAGAAT-AATAGTATACAAGAGGGAAAGCAATCCATCAAAGTCTCCTGACTACTCTGAAGTTGATAGGAAATTGGCATGACTTGCCTCAAGGAACAGAGTACATTGGAGGAACTTCTGAAAAGAAAGGAGTTTCTAACTTTGAAGACATGTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29191421 346 - 170955103 AGCTAGATTGAAGCC--AAATTACATACCTAAAACAGTTCTGAAAAGGTGCATATGATGAATTTTATC----------AAGAGATCAGTGGGTTCAAAGTGTTTGAAGACTTTGATTCTGATGGAATAATTTTTGGCTTGGAATAACTGGTAATTTAATTATAAAGATATTAAAATCCCTAACTAAAGGCATAGACAGGATGGTTGTAGAAT-AATAGTATACAAGAGGGAAAGCAATCCATCAAAGTCTCCTGACTACTCTGAAGTTGATAGGAAATTGGCATGACTTGCCTCAAGGAACAGAGTACATTGGAGGAACTTCTGAAAAGAAAGGAGTTTCTAACTTTGAAGACATGTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2198951 346 -   2996164 AGCTAGATTGAAGCC--AAATTACATACCTAAAACAGTTCTGAAAAGGTGCATATGATGAATTTTATC----------AAGAGATCAGAGGGTTCAAAGTGTTTGAAGACTTTGATTCTGATGGAATAATTTTTGGCTTGGAATAACTGGTAATTTAATTATAAAGATATTAAAATCCCTAACTAAAGGCATAGACAGGATGGTTGTAGAAT-AATAGTATACAAGAGGGAAAGCAATCCATCAAAGTCTCCTGACTACTCTGAAGTTGATAGGAAATTGGCATGACTTGCCTCAAGGAACAGAGTACATTGGAGGAACTTCTGAAAAGAAAGGAGTTTCTAACTTTGAAGACATGTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2064683 346 -   2157725 AGCTAGACTG-AGCCAAAAATTACATACCTAAAACAGTTCTGAAAAGGTGCATATGATGAATTTTATC--------CAAGAGGATCAG-GGGTTCAAAGTGTTTGAAGACTTTG--TCTGATGGAATAATTTTTGGCTTGGAATAACTGGTAATTTAATTATAAAGATATTAAAATCCCTAACTAAAGGCATAGACAGGATGATGTAAATAT-AATAGTATACAAGAGGGAAGGCAATCCATCAAAGTCTCCTGGCTACTCTGAAGTTGATAGGAAATTGGCATGACTTGCCTCAAGGAACAGAGTACATTGGAGGAACTTCTGAAAAGAAAGGAGTTTCTAACTTTGAAGACATGTCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28494847 346 -  71996105 AGCTAGATTGAAGCC--AAATTACATACCTAAAACAGTTCTGAAAAGGTGCATATGATGAATTTTATC----------AAGAGATCAGACGGTTCAAAGTGTTTGAAGACTTTGATTCTGATGGAATAATTTTTGGCTTGGAATAACTGGTAATTTAATTATAAAGATATTAAAATCCCTAACTAAAGGCGTAGACAGGATGGTTGTAGAAT-AACAGTATACAAGAGGGAAGGCAATCCATCAAAGTCTCCTGACTACTCTGAAGTTGATAGGAAATTGGCATGACTTGCCTCAAGGAACAGAGTACATTGGAGGAACTTCTGAAAAGAAAGGAGTTTCTAACTTTGAAGACGTGTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2201799 346 +   2316924 AGCTAGACTGAAGCC--AAATTACATACCTAAAACAGTTCTGAAAAGGTGCATATGATGAATTTTATC----------AAGAGATCAGAGGGTTCAAAGTGTTTGAAGACTTTGATTCTGATGGAATAATTTTTGGCTTGGAATAACTGGTAATTTAATTATAAAGATATTAAAATCCCTAACTAAAGGCATAGACAGGATGGTTGTAGAAT-AATAGTATACAGGAGGGAAGGCAATCCATCAAAGTCTCCTGGCTACTCTGAAGTTGATAGGAAATTGGCATGACTTGCCTCAAGGAACAGAGTACATTGGAGGAACTTCTGAAAAGAAAGGAGTTTCTAACTTTGAAGACATGTCA
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171571296 344 - 171630274 AGCTAGACTGAAGCC--AAAGTACATGCCTACAACAGTTCTTAAGAGGTGCATGTGATGAATTTTATC----------AAGAGATCAGAGGGTTTAAAGTGATTGAAGACTTTGGTTCTGATGGAATAATTTTTGGCTTGGAATAACTGGCAATTTAATTATAAAGATATGAAAATCCCTCACTAAAGGCATGGACAGGATG-TTGTAGAAT-AATAGTGTCCAAGCGGGAAGGCAATACACTGAAGTCCCCTGACTACTCTGAAGTTGATAGGAAATTGGCATCACTTGCCTCTAGGAACAGAGTACATTGG-GGAACTTCTGAAAAGAAGGGAGTTTTTAACTTTGAAGACATGCCA
i calJac3.chr4             C 0 I 406
s otoGar3.GL873742           1674272 256 -   2232465 AGCTAGATTTGAGCC--AAACTACAAACTTAGAATAGTTCTGAAAAGGTGCATATGATTGGTTTTTTTTTTTTTTTTGGTAAGAT----GGGTGTGAAGTGATTGA-------GGTTCTGGTGGAAGAATTTTTGGCTTGGGGCCACTGGTTATTTAATCAGAAAGACATGAAAATCCCTAACTAAAGGGGTAGAACATATAGTTTTAGAACAAACAGAATGTAAATGGGGAGGTAAAACATGCAAGGCTCCCG------------------------------GACTTGTC--------------------------CTTCTGA----------------------------------
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            348217 239 -    859332 AGTTATATTTGATCC--AGCCAATATGCTTAGGGCAGTCTTAGAAGGAT--ATAGGATGGAGCTTATC----------AATGGATAGGAAGATTTGAAGTGATTGAGGACTT-GGTGCTGATGGAAGAGGTTTTGGCTTGGAATTACTGGATATTTAATCATAAA-ATGTGGAAACCCTTAACTAAGGTGATGGACAAGGTGATTCTAGAACAAATAGCACATAA-TGGGAAGGTAA--------------------------------------------------------------------------------AATGCTGAGAA---------TTCTGACT--------------
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=199630.000000
s hg38.chr6_GL000254v2_alt    351536 51 +   4827813 TATGGGTTCAGCATTGCTT-CCTAAACAGAAGAAGACTTTTCTTTCtttcct
s panTro5.chr6              29326183 51 + 175400573 TATGGGTTCAGCATTGCTT-CCTAAACAGAAGAAGACTTttctttctttcct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29571938 51 + 173848474 TATGGGTTCAGCATTGCTT-CCTAAACAGAAGAAGACttttctttctttcct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5369542 52 +   6154872 TATGGGTTCAGCATTGCTTCCCTAAACAGAAGAAGACTTTTCtttctttcct
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29530650 49 + 172585720 TATGGGTTCAGCATTGCTT-CCTAAACAGAAAAAGACttttccttctttc--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29191767 49 - 170955103 TATGGGTTCAGCATTGCTT-CCTAAACAGAAGAAGACttttccttctttc--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2199297 49 -   2996164 TATGGGTTCAGCATTGCTT-CCTAAACAGAAGAAGACttttccttctttc--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2065029 51 -   2157725 TATGGGTTCAGCATTGCTT-CCTAAACAGAAGAAGACTtttccttctttctt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28495193 51 -  71996105 TATGGGTTCAGCATTGCTT-CCTAAACAGAAGAAGACTTTTCCTTCtttctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2202145 51 +   2316924 TATGGGTTCAGCATTGCTT-CCTAAACAGAAGAAGACTATTCCttctttctt
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171572046 38 - 171630274 TATGTGTTCAGTGTTGCTT-CCTAG-------------TTCCATTCTAAAtt
i calJac3.chr4             I 406 C 0
s otoGar3.GL873742           1674528 32 -   2232465 --------------------CATTGACAGAAGGAAATTAGCATGCCTTGCCT
i otoGar3.GL873742         C 0 I 92
s dasNov3.JH570037            348456 39 -    859332 ----GGTCTAACATTGATT---------GAAGGGAAATATCATTTCTTGGCC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=2548.000000
s hg38.chr6_GL000254v2_alt    351587 1 +   4827813 t
s panTro5.chr6              29326234 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29571989 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5369594 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17             28495244 1 -  71996105 t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2202196 1 +   2316924 t
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171572084 1 - 171630274 t
i calJac3.chr4             C 0 C 0
s dasNov3.JH570037            348495 1 -    859332 T
i dasNov3.JH570037         C 0 I 35
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1674560 92 -   2232465 I
e cerAty1.NW_012001495v1     2065080 0 -   2157725 C
e macNem1.NW_012011356v1     2199346 0 -   2996164 C
e macFas5.chr4              29191816 0 - 170955103 C
e rheMac8.chr4              29530699 0 + 172585720 C
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=667134.000000
s hg38.chr6_GL000254v2_alt    351588 168 +   4827813 tttt------tttttttttttttttcctgagacagattcctactctgtcacccacgctggagtg-agtggcgcgatctgggctaactgcaacttctgactcctgggttcaagcgattctcttgccccagcctcctgagtatctgggattacaggcgtgtaccaccatgccctgct
s panTro5.chr6              29326235 162 + 175400573 tttt------ttttttttt------cctgagacagattcctactctgtcacccacgctggagtg-agtggcgcgatctgggctcactgcaacttctgactcctgggttcaagcgattctcttgccccagcctcctgagtatctgggattacaggcgtgcaccaccatgccctgct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29571990 156 + 173848474 tttt------ttt------------cctgagacagattcctactctgtcacccacgctggagtg-agtggcgcgatctgggctcactgcaacttctgactcctgggttcaagcgattctcttgccccagcctcctgagtatctgggattacaggcgtgcaccaccatgccctgct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5369595 163 +   6154872 tttt------tttttttttt-----cctgagacagattcctactctgtcacccacgctggagtg-agtggcgcgatctgggctcactgcaacttctgactcctgggttcaagcgattcccttgccccagcctcctgagtatctgggattacaggcgtgcaccaccatgccctgct
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29530699 160 + 172585720 ---t------tttttttttt-----cctgagacagattcccactctgtcgcccaggctggagtgcagtggtgcgatctgggctcactgcaacttctgactcgtgggttcaagtgattctcttgcccc-gtctcccgagtatctgggattacaggcatgcaccaccatgacttgct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29191816 160 - 170955103 ---t------tttttttttt-----cctgagacagattcccactctgtcgcccaggctggagtgcagtggtgcgatctgggctcactgcaacttctgactcgtgggttcaagtgattctcttgcccc-gtctcccgagtatctgggattacaggcacgcaccaccatgacttgct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2199346 161 -   2996164 --tt------tttttttttt-----cctgagacagattcccactctgtcgcccaggctggagtgcagtggtgcgatctgggctcactgcaacttctgactcgtgggttcaagtgattctcttgcccc-gtctcccgagtatctgggattacaggcacgcaccaccatgacttgct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2065080 162 -   2157725 -ttt------tttttttttt-----cctgagacagattcccactctgtcgcccaggctggagtgcagtggtgtgatctgggctcactgcaacttctgactcgtgggttcaagtgattctcttgcccc-gtctcccgagtatctgggattacaggcacgcaccaccatgacttgct
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28495245 170 -  71996105 ctttcttttatttttttttt-----cctgagacagattcccactctgtcacccaggctggagtgcagtcgtgtgatctgggctcactgcaacttctgactcctgggttcaagtgattctcttgccccagtctcccgagtatctgggattacaggcacgcaccactgtgacttgct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2202197 163 +   2316924 tttt------ttttttttta-----actgagacagattcccactctgtcgcccaggctggagtgcagtggtgtgatctgggctcacagcaacttctgactcgtgggttcaagtgattctcttgcccc-gtctcccgagtatctgggattacaggcacgcaccaccatgacttgct
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171572085 164 - 171630274 tatt------ttattttttt-----tttgagacagagtctgggtctgtcacccaggcttgagtgcagagaaatgatcttggctcacctcaactttcacctcctgagtacaagtgtttctactgcctcagcctcctgagtagctgggattacaggcgtgtaccaccacgctcagct
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            348496  35 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1674560  92 -   2232465 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=637923.000000
s hg38.chr6_GL000254v2_alt    351756 141 +   4827813 aatttttttgtacttttagtagagatggggtttcgccatgttggccaggctggtctcgaactcctgacctcatgtgatctgcccaccttggcccccacaaagtactgggattacaggcgtgaaccaccgcgcccagccAAC
s panTro5.chr6              29326397 141 + 175400573 aatttttttgtacttttagtagagatggggtttcgccatgttggccaggctggtctcgaactcctgacctcatgtgatctgcccaccttggcccccacaaagtactgggattacaggcgtgaaccaccgcgcccagccAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29572146 141 + 173848474 aatttttttgtacttttagtagagatggggtttcgccatgttggccaggctggtctcgaactcctgacctcatgtgatctgcccaccttggcccccacaaagtactgggattacaggcgtgaaccaccgcacccagccAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5369758 141 +   6154872 aatttttttgtacttttagtagagatggggtttcgccatgctggccaggctggtctcgaactcctgacctcatgtgatctgcccaccttggcccccacaaagtactgggattacaggcgtgaaccaccgcgcccagccAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29530859 141 + 172585720 aatttttttgtatttttagtagagacggggttttgccatgttggccaggctggtcttgaactcctgacctcaggtgatctgcccaccttggcccccaccaagtactgggattacaggcatgaaccaccacgcccggccAAC
i rheMac8.chr4             C 0 I 236
s macFas5.chr4              29191976 141 - 170955103 aatttttttgtatttttagtagagacggggttttgccatgttggccaggctggtctcgaactcctgacctcaggtgatctgcccaccttggcccccaccaagtactgggattacaggcatgaaccaccacgcccggccAAC
i macFas5.chr4             C 0 I 236
s macNem1.NW_012011356v1     2199507 141 -   2996164 aatttttttgtatttttagtagagacggggttttgccatgttggtcaggctggtcttgaactcctgacctcaggtgatctgcccaccttggcccccaccaagtactgggattacaggcatgaaccaccatgcccggccAAC
i macNem1.NW_012011356v1   C 0 I 236
s cerAty1.NW_012001495v1     2065242 141 -   2157725 aatttttttgtatttttagtagagatggggttttgccatgttggccaggctggtctcgaactcctgacctcaggtgatctgcccaccttggcccccaccaagtactgggattacaggcatgaaccaccacgcccggccAAC
i cerAty1.NW_012001495v1   C 0 I 235
s chlSab2.chr17             28495415 141 -  71996105 aatttttttgtatttttagtagggacggggttttgccatgttggccaggctggtctcgaactcctgacctcaggtgatctgcctaccttggccctcaccaagtactgggattacaggcatgaaccaccatgcctggcTAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2202360 141 +   2316924 aatttttttgtatttttagtagagacggggttttgtcatgttggccaagctggtctcgaactcctgacctcaggtgatctgcccaccttggcccccaccaagtactgggattacaggcatgaaccaccatgcccggccAAC
i manLeu1.NW_012104165v1   C 0 I 6319
s calJac3.chr4             171572249 140 - 171630274 aatttttctgtgcttttagtacagacagggtttcaccatgttggccaggctggtctcaaacttctgacctcaggtgatccacccgccttggccccc-cagaatgctgggattacaggcgtgagccactgcaccaggccAAC
i calJac3.chr4             C 0 C 0
s dasNov3.JH570037            348531  53 -    859332 AATATTTCTGGA---TTAGAAAAGA------------------ACCCTACTGGTCT---------------------------CAGCATTGCTTCC-----------------------TGAAC-----------------
i dasNov3.JH570037         I 35 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1674560  92 -   2232465 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=6006.000000
s hg38.chr6_GL000254v2_alt    351897 1 +   4827813 A
s panTro5.chr6              29326538 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29572287 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5369899 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29531236 1 + 172585720 A
i rheMac8.chr4             I 236 C 0
s macFas5.chr4              29192353 1 - 170955103 A
i macFas5.chr4             I 236 C 0
s macNem1.NW_012011356v1     2199884 1 -   2996164 A
i macNem1.NW_012011356v1   I 236 C 0
s cerAty1.NW_012001495v1     2065618 1 -   2157725 A
i cerAty1.NW_012001495v1   I 235 C 0
s chlSab2.chr17             28495556 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2208820 1 +   2316924 A
i manLeu1.NW_012104165v1   I 6319 C 0
s calJac3.chr4             171572389 1 - 171630274 A
i calJac3.chr4             C 0 C 0
s dasNov3.JH570037            348584 1 -    859332 A
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1674560 92 -   2232465 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=2294195.000000
s hg38.chr6_GL000254v2_alt    351898 369 +   4827813 GAGGAAGGATTTTCT---AATTGTTGACAGAATTTAGTGAAATCACCAGAGCCTGAAAAATAGGAAAATGAGTTCAAAGGTCATTACCATCATTGAAGATAAGGAAAGACTAAGAAGATTCTCATCACAATGGAGTACTTCTTATTTCTTACAGAAAAAGATTCTTGGCATCAGCCTCTTGAAGGCCTCCTTCATATCTTTATTTCTAAGGCTGTAGATGAGGGAGTTCAACATGGATGTGATGATTCCATAGAAGAGGGAAACCATCTTTCCCCAGTCCTTAGAGGTGGATGAAGGTGGTTGAAGATACATATAAATGGCTGTTCCAT---AAAAGAGGGACACCACAATCATGTGGGACCCACATGTCCCAAA
s panTro5.chr6              29326539 369 + 175400573 GAGGAAGGATTTTCT---AACTGTTGACAGAATTCAGTGAAATCACCAGAGCCTGGAAAATAGGAAAATGAGTTCAAAGGTCATTACCATCATTGAAGATAAGGAAAGACTAAGAAGATTCTCATCACAATGGAGTACTTCTTATTTCTTACAGAAAAAGATTCTTGGCATCAGCCTCTTGAAGGCCTCCTTCATATCTTTATTTCTAAGGCTGTAGATGAGGGGGTTCAACATGGGTGTGATGATTCCATAGAAGAGGGAAACCATCTTTCCCCAGTCCTTAGAGGTGGATGAAGGTGGTTGAAGATACATATAAATGGCTGTTCCAT---AAAAGAGGGACACCACAATCATGTGGGACCCACATGTCCCAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29572288 369 + 173848474 GAGGAAGGATTTTCT---AACTGTTGACAGAATTCAGTGAAATCACCAGAGCCTGGAAAATAGGAAAATGAGTTCAAAGGTCATTACCATCATTGAAGATAAGGAAAGACTAAGAAGATTCTCATCACAATGGAGTATTTCTTATTTCTTACAGAAAAAGATTCTTGGCATCAGCCTCTTGAAGGCCTCCTTCATATCTTTATTTCTAAGGCTGTAGATGAGGGGGTTCAACATGGGTGTGATGATTCCATAGAAGAGGGAAACCATCTTTCCCCAGTCCTTAGAGGTGGATGAAGGTGGTTGAAGATACATATAAATGGCTGTTCCAT---AAAAGAGGGACACCACAATCATGTGGGACCCACATGTCCCAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5369900 364 +   6154872 GAGGAAGGATTTTC-------TGTTGACAGAATTCAGTGAAATCACCAGAGCCTGGAAAATAGGAAAATGAGTTCAAAGGTCATTACCATCATTGAAGATAAGGAAAGACTAAGAAGATTCTCATCACAATGGAGTACTTCTTATTTCTTACAGAAAAAGATTCTTGGCATCACCCTCTTGAAGGCCTCCTTCATATCTTTATTTCTAAGGCTGTAGATGAGGG-GTTCAACATGGGTGTGATGATTCCATAGAAGAGGGAAACCATCTTTCCCCAGTCCTTAGAGGTGGATGAAGGTGGTTGAAGATACATATAAATGGCTGTTCCAT---AAAAGAGGGACACCACAATCATGTGGGACCCACATGTCCCAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29531237 369 + 172585720 GAGGAAGGATTTTCT---AACTGTTGATAGAATTCAGTGAAATCACCAGAGCCTGGAAAATAGGAAAATGAGTTCAAAGGTCATTACCATCCTTGAAGATAAGGAAAGACTAAGAAGATTCTCATCACAATGGAGTACTTCTTATTTCTTACAGAAAAAGATTCTTGGCATCACCCTTTTGAAGGCCTCCTTCATATCTTTATTTCTAAGGCTGTAGATGAGGGGGTTCAACATGGGTGTGATGATTCCGTAGAAGAGGGAAACCATCTTTCCCCAGTCCTTAGAGGTGGATGAAGGAGGTTGTAGGTACATATAAATGGCTGTTCCAT---AAAAGAGAGACACCACAACCATGTGGGACCCACATGTCCCAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29192354 369 - 170955103 GAGGAAGGATTTTCT---AACTGTTGATAGAATTCAGTGAAATCACCAGAGCCTGGAAAATAGGAAAATGAGTTCAAAGGTCATTACCATCCTTGAAGATAAGGAAAGACTAAGAAGATTCTCATCACAATGGAGTACTTCTTATTTCTTACAGAAAAAGATTCTTGGCATCACCCTTTTGAAGGCCTCCTTCATATCTTTATTTCTAAGGCTGTAGATGAGGGGGTTCAACATGGGTGTGATGATTCCGTAGAAGAGGGAAACCATCTTTCCCCAGTCCTTAGAGGTGGATGAAGGAGGTTGTAGGTACATATAAATGGCTGTTCCAT---AAAAGAGAGACACCACAACCATGTGGGACCCACATGTCCCAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2199885 369 -   2996164 GAGGAAGGATTTTCT---AACTGTTGATAGAATTCAGTGAAATCACCAGAGCCTGGAAAATAGGAAAATGAGTTCAAAGGTCATTACCATCCTTGAAGATAAGGAAAGACTAAGAAGATTCTCATCACAATGGAGTACTTCTTATTTCTTACAGAAAAAGATTCTTGGCATCACCCTTTTGAAGGCCTCCTTCATATCTTTATTTCTAAGGCTGTAGATGAGGGGGTTCAACATGGGTGTGATGATTCCGTAGAAGAGGGAAACCATCTTTCCCCAGTCCTTAGAGGTGGATGAAGGAGGTTGTAGGTACATATAAATGGCTGTTCCAT---AAAAGAGAGACACCACAACCATGTGGGACCCACATGTCCCAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2065619 369 -   2157725 GAGGAAGGATTTTCT---AACTGTTGATAGAATTCAGTGAAATCACCAGAGCCTGGAAAATAGGAAAATGAGTTCAAAGGTCTTTACCATCCTTGAAGATAAGGAAAGACTAAGAAGATTCTCATCACAATGGAGTACTTCTTATTTCTTACAGAAAAAGATTCTTGGCATCACCCTTTTGAAGGCCTCCTTCATATCTTTATTTCTAAGGCTGTAGATGAGGGGGTTCAACATGGGTGTGATGATTCCATAGAAGAGGGAAACCATCTTTCCCCAGTCCTTAGAGGTGGATGAAGGAGGTTGTAGGTACATATAAATGGCTGTTCCAT---AAAAGAGAGACACCACAATCATGTGGGACCCACATGTCCCAAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28495557 369 -  71996105 GAGGAAGGATTTTCT---AACTGTTGATAGAATGCAGTGAAATCACCAGAGCCTGGAAAATAGGAAAATGAGTTCAAAGGTCATTACCATCCTTGAAGATAAGGAAAGACTAAGAAGATTCTCATCACAATAGAGTACTTCTTATTTCTTACAGAAAAAGATTCTTGGCATCACCCTTTTGAAGGCCTCCTTCATGTCTTTATTTCTAAGGCTGTAGATGAGGGGGTTCAACATGGGTGTGATGATTCCATAGAAGAGGGAAACCATCTTTCCCCAGTCCTTAGAGGTGGATGAAGGAGGTTGTAGATACATATAAATGGCTGTTCCAT---AAAAGAGAGACACCACAACCATGTGGGACCCACATGTCCCAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2208821 369 +   2316924 GAGGAAGGATTTTCT---AACTGTTGATAGAATTCAGTGAAATCACCAGAGCCTGGAAAATAGGAAAATGAGTTCAAAGGTCTTTACCATCCTTGAAGATAAGGAAAGACTAAGAAGATTCTCATCACAATGGAGTACTTCTTATTTCTTACAGAAAAAGATTCTTGGCATCACCCTTTTGAAGGCCTCCTTCATATCTTTATTTCTAAGGCTGTAGATGAGGGGGTTCAACATGGGTGTGATGATTCCATAGAAGAGGGAAACCATCTTTCCCCAGTCCTTAGAGGTGGATGAAGGAGGTTGTAGGTACATATAAATGGCTGTTCCAT---AAAAGAGAGACACCACAATCATGTGGGACCCACATGTCCCAAA
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171572390 340 - 171630274 GAGGAAGGCTTTTCT---AAGGGTTGGTAGAATTCAGTGAAATCACCAGACTCTGGAAAATAGGAAAATGAGTTCAAAAGTTATTAACATCGTTGAAAATAAGGAGAGACTAAGAAGATTCACATCACAATGGAGTACTTTTTACTTCTTCCAG---AAGATTCTTGGCATCACCCTCTTGAAGGCCTCCTTCATGTC--TATTTCTAAGGCTGTAGATGAGGA-----------GGTGTGATGATT----------------CCATCTTTCCCCAGTCCTTAGAGGTGGATGAAGGTGGCTGTAGATACGTATAAATGGCTGTTTAACTTGAAAAGAGAGACACCACAATCATGTGGGACCCACATGTCCCAAA
i calJac3.chr4             C 0 M 252
s otoGar3.GL873742           1674652 369 -   2232465 GAAGAAGCACTTTCT---TCCTGTTGGTAGAATTCAATGAAGTCATGGGAAACTGGAAAATAGTAGTATCACTTCAAATGTTATTACCACCTTCAAGGATGAGGAGAGACTTGGGAGATTCTTATCACAATGGAGTCCTTCCTATTTCTTATAGAAAATGATTCTTGACATTACTCTCTTGAAAGCCTCCTTCATATCTTTATTTCTAAGGCTGTAGATGAGGGGGTTCAACATGGGTGTAATGATCCCATAGAAGAGGGAAACCATCTTTCCCCAGTCCTTAGAGGTGGAGGAAGGTGGCTGTAGGTACATATAAATGGCTGTTCCAT---AAAAGAGAGACACCACAATGAGGTGGGACCCACACGTCCCAAA
i otoGar3.GL873742         I 92 C 0
s dasNov3.JH570037            348585 365 -    859332 GAGAAATAATTTTTTTTGAACTCTTGGTAGAATTCAAACAAATAATGAGAACCTAGAAAATAAGAAAATTAGTTCAAA-GTTATTACCATC--TGAAGGTAGAGAGAATCTCAGATGATTCTCATCATCATGGATTACT---TATTTCTTACAAAAAATGG-TCTTGACAGGACCCTCTTGAAGGATGCCTTAATATCCTTATTTCGCAGACTATAGATGAGGGGGTTCAACATGGGTGTGATGATTCCATAGAAGAGGGAAACCATTTTTCCCCAATCCTCAGAGGTGGATGAAGGTGGTTGTAGATATATGTAGATGGCTGTTCCAA---AGAAGAGAGACAACACAACCATGTGGGACCCACATGTCCCAAA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=1470385.000000
s hg38.chr6_GL000254v2_alt    352267 254 +   4827813 TGCTTTTTGCCGTCCTTCTGCTGACCTGATTTTTAATACTGCTTGAGCTATGAAGCCATAGGAGATGAGGATCAATGTCACTGGAATTAGAAGAATTAGTACACTAAAGAAGAAGAGCTCAGCCTCAATAGGCTTTGTGTCAGCACATGACAACTTGAGAAGTGCAGGCACCTCACAGAAAAAGTGGTCCACTTCCTGGTGACCACAGCGTGGCATGTTAAGAGTCAAGGAAGACTGCAGCACTGAGTTGCCGA
s panTro5.chr6              29326908 254 + 175400573 TGCTTTTTGCCGTCCTTCTGCTGACCTGATTTTTAATACTGCTTGAGCTATGAAGCCATAGGAGATGAGGATCAATGTCACTGGAATTAGAAGAATTAGTACACTAAAGAAGAAGAGCTCAGCCTCAATAGGCTTTGTGTCAGCACATGACAACTTGAGAAGTGCAGGCACCTCACAGAAAAAGTGGTCCACTTCCTGGTGACCACAGCGTGGCATGTTAAGAGTCAAGGAAGACTGCAGCACTGAGTTGCCGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29572657 254 + 173848474 TGCTTTTTGCCGTCCTTCTGCTAACCTGATTTTTAATACTGCTTGAGCTATGAAGCCATAGGAGATGAGGATCAATGTCACTGGAATTAGAAGAATTAGTACACTAAAGAAGAAGAGCTCAGCCTCAATAGGCTTTGTGTCAGCACATGACAACTTGAGAAGTGCAGGCACCTCACAGAAAAAGTGGTCCACTTCCTGGTGACCACAGCGTGGCATGTTAAGAGTCAAGGAAGACTGCAGCACTGAGTTGCCGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5370264 254 +   6154872 TGCTTTTTGCCGTCCTTCTGCTGACCTGATTTTTAATACTGCTTGAGCTATAAAGCCATAGGAGATGAGGATCAATTTCACTGGAATTAGAAGAATTAGTACACTAAAGAAGAAGAGCTCAGCCTCAATAGGCTTTGTGTCAGCACATGACAACTTGAGAAGTGCAGGCACCTCACAGAAAAAGTGGTCCACTTCCTGGTGACCACAGCGTGGCATGTTAAGAGTCAAGGAAGACTGCAGCACTGAGTTGCCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29531606 254 + 172585720 TGCTTTTCGCCGTCCTTCTGCTGACCTGATTTTTAATACTGCTTGAGCTATGAAGCCATAGGAGATGAGGATCAATGTCACTGGAATTAGAAGAATTAGTACACTAAAGAAGAAGAGCTCAGCCTCAATAGGCTTTGTGTCAGCACATGACAACTTGAGAAGTACAGGCACCTCACAGAAAAAGTGGTCCACTTCCTGGTGACCACAGCGTGGCATGTTAAGAGTCAAGGAAGACTGCAGCACTGAGTTGCTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29192723 254 - 170955103 TGCTTTTCGCCGTCCTTCTGCTGACCTGATTTTTAATACTGCTTGAGCTATGAAGCCATAGGAGATGAGGATCAATGTCACTGGAATTAGAAGAATTAGTACGCTAAAGAAGAAGAGCTCAGCCTCAATAGGCTTTGTGTCAGCACATGACAACTTGAGAAGTACAGGCACCTCACAGAAAAAGTGGTCCACTTCCTGGTGACCACAGCGTGGCATGTTAAGAGTCAAGGAAGACTGCAGCACTGAGTTGCTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2200254 254 -   2996164 TGCTTTTCGCCGTCCTTCTGCTGACCTGATTTTTAATACTGCTTGAGCTATGAAGCCATAGGAGATGAGGATCAATGTCACTGGAATTAGAAGAATTAGTACGCTAAAGAAGAAGAGCTCAGCCTCAATAGGCTTTGTGTCAGCACATGACAACTTGAGAAGTACAGGCACCTCACAGAAAAAGTGGTCCACTTCCTGGTGACCACAGCGTGGCATGTTAAGAGTCAAGGAAGACTGCAGCACTGAGTTGCTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2065988 254 -   2157725 TGCTTTTCGCCGTCCTTCTGCTGACCTGATTTTTAATACTGCTTGAGCTATGAAGCCATAGGAGATGAGGATCAATGTCACTGGAATTAGAAGAATTAGTGCGCTAAAGAAGAAGAGCTCAGCCTCAATAGGCTTTGTGTCAGCACATGACAACTTGAGAAGTGCAGGCACCTCACAGAAAAAGTGGTCCACTTCCTGGTGACCACAGCGTGGCATGTTAAGAGTCAAGGAAGACTGCAGCACTGAGTTGCTGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28495926 254 -  71996105 TGCTTTTCGCCGTCCTTTTGCTGACCTGATTTTTAATACTGCTTGAGCTATGAAGCCATAGGAGATGAGGATCGATGTCACTGGAATTAGAAGAATTAGTACGCTAAAGAAGAAGAGCTCAGCCTCAATAGGCTTTGTGTCAGCACATGACAACTTGAGAAGTGCAGGCACCTCACAGAAAAAGTGGTCCACTTCCTGGTGACCACAGCGTGGCATGTTAAGAGTCAAGGAAGACTGCAGCACTGAGTTGCTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2209190 254 +   2316924 TGCTTTTCGCCGTCCTTCTGCTGACCTGATTTTTAATACTGCTTGAGCTATGAAGCCATAGGAGATGAGGATCAATGTCACTGGAATTAGAAGAATTAGTGTGCTAAAGAAGAAGAGCTCAGCCTCAATAGGCTTTGTGTCAGCACATGACAACTTGAGAAGTGCAGGCACCTCACAGAAAAAGTGGTCCACTTCCTGGTGACCACAGCGTAGCATGTTAAGAGTCAAGGAAGACTGCAGCACTGAGTTGCTGA
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1675021 254 -   2232465 TGCTTTTCGCCGACCTTCCGCTGACCTGATTTTCAATACTGCTTGAACTATGAAGCTGTAGGAAATGAGTATCAATGTCACTGGAATTAGCAGAATTAATACACTGAAGAAAAAGAGCTCAGCCTCAATAGGCTTAGTGTCAGCACATGACAATTTGAGAAGGGCAGGGACCTCGCAGAAAAAGTGGTCTACTTCCCTATGACCACAGCGTGGCATGTGAAGGGTCAAGGAAGACTGCAACACTGAGTTGCTGA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            348950 254 -    859332 GGCTTTTCTCTGTCCTTCTGCTGATCTGATTCTCAATACCGCTTGAACTATGAAGCCATAGGAGATGAGGATTAATGTCACCGGGATTAGCAGCATTAACCCACTAAAGAAAAGGAGCTCAGCCTCAATAGGCTTTGTGTCGGCACACGACAACTTGAGAAGGGCAGGGACCTCACAGAAGAAGTGGTCCACTTCCCTATGACCACAGCGTGGCAAGCTAATGGTCAAAGAAGATTGCAACACCGAGTTGCTGA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171572730 252 - 171630274 M
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=5799770.000000
s hg38.chr6_GL000254v2_alt    352521  967 +   4827813 AACCAATGAGCCATGAGAAGGCTGCCATCCTTAGGCAGAACCAATAATTCATGATGACTACATAGTGGAGGGGTCTGCAAACAGCCACATATCTGTCAAAGGACATAACAGCCAGAAGGAGACACTCTGTAGCACCTAGGGCCAGGAAGATGATGAGGTGGGCCACACAGCCAGCATAGCTGATGGTCTTTTTGTTGCAACCAATATTTACCAACATATGAGGGACTGTAGTTGTGGTATAGCAGAGATCTAAGATGGAGAGATTAGTGAGAAAGAAATACATGGGAGTATGAAGTTTGGGATCCAGAATGCACACCATCATGATGGACACATTGCCAAATATGGTGATTGTGTATGATATTAACAGGACCACAAAAAGGGGCATTTGTAGCCAAGCCCTATCTGAGAAGCCAAGTAGTATAAACTCTTTTGGGGAGCTCTCATTTTCCCAATTCATGATGACTCACTTATTTCGCACTCCTAAAAAAATGTAAGATAGGAAAGCAATCAATG---------TTTGTTTATTGAATACTCTTACTGGAGCTGAATTAAATT-----------TAATGAATAGTTCAGCATCAAATACAATTTACAGTCAAGTGGATAAAGCCCTTG----TAAAGTATAATATGGTTATGTTTAAGCTTA------------AAAGTAGTTCCTGTGTTTTCAGTAG---TGTTTAAATTACTT--TA--AAGAAAATCATTACATTTAAATGACATAAAGTATGTAACATAT--GCATAACACATGGAAAATTGTGAGTTCTCAATGCATTTTATGTTCTCT-CC-TCTTCTTACCTCCTAACCTATCTTAATAAACAGTTTAGAAAGAAATATTACTTTTA--CTCCAATTATTTTAAATTTGGCCTGAAAATGCTGAG-----TAATATAGAGGTTATAAGAGTTGAATCTAAATCTGCAATTGATCTAAAGAAATTTTGCTTC-TTTTAGTAACATCTTTACGTG----TTTTTTTGAGTTGTGTCTGTCTC
s panTro5.chr6              29327162  967 + 175400573 AACCAGTGAGCCATGAGAAGGCTGCCATCCTTAGGCAGAACCAATAATTCATGATGACTACATAGTGGAGGGGTCTGCAAACAGCCACGTATCTGTCAAAGGACATAACAGCCAGAAGGAGACACTCTGTAGCACCTAGGGCCAGGAAGATGATGAGTTGGGCCACACAGCCAGCATAGCTGATGGTCTTTTTGTTGCAACCAATATTTACCAACATATGAGGGGCTGTAGTTGTGGTATAGCAGAGATCTAAGATGGAGAGATTAGTGAGAAAGAAATACATGGGAGTATGAAGTTTGGGATCCAGAATGCACACCATCATGATGGACACATTGCCAAATATGGTGATTGTGTATGATATTAACAGGACCACAAAAAGGGGCATTTGTAGCCAAGCCCTATCTGAGAAGCCAAGTAGCATAAACTCTTTTGGGGAGCTCTCATTTGCCCAATTCATGATGACTCACTTATTTCGCACTCCTAAAAAAATGTAAGATAGGAAAGCAATCAATG---------TTTGTTTATTGAATACTCTTACTGGAGCTGAATTAAATT-----------TAATGAATAGCTAAGCATCAAATACAATTTACAGTCAAGTGAATAAAGCCCTTG----TGAAGTATAATATGGTTATGTTTAAGCTTA------------AAAGTAGTTCCTGTGTTTTCAGTAG---TGTTTAAATTACTT--TA--AAGAAAATCATTACATTTAAATGACATAAAGTATGTAACATAT--GCATAACACATGGAAAATTGTGAGTTCTCAATGCATTTTATGTTCTCT-CC-TCTTCTTACCTCCTAACCTATCTTAATAAACAGTTTAGAAAGAAATATTACTTTTA--CTCCAATTATTTTAAATTTGGCCTGAAAATGCTGAG-----TAATATAGAGGTTATAAGAGTTGAATCTAAATCTGCAATTGATCTAAAGAAATTTTGCTTC-TTTTAGTAACATCTTTACATG----TTTTTTTGAGTTGTGTCTTTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29572911  965 + 173848474 AACCAGTGAGCCATGAGAAGGCTGCCATCCTTAGGCAGAACCAATAATTCATGATGACTGCATAGTGGAGGGGTCTGCAAACAGCCACGTATCTGTCAAAGGACATAACAGCCAGAAGGAGACACTCTGTAGCACCTAGGGCCAGGAAGATGATGAGTTGGGCCACACAGCCAGCATAGCTGATGGTCTTTTTGTTGCAACCAATATTTACCAACATATGAGGGGCTGTAGTTGTGGTATAGCAGAGATCTAAGATGGAGAGATTAGTGAGAAAGAAATACATGGGAGTATGAAGTTTGGGATCCAGAATGCACACCATCATGATGGACACATTGCCAAATATGGTGATTGTGTATGATATTAACAGGACCACAAAAAGGGGCATTTGTAGCCAAGCCCTATCTGAGAAGCCAAGTAGTATAAACTCTTTTGGGGAGCTCTCATTTGCCCAATTCATGATGACTCACTTATTTCGCACTCCTAAAAAAATGTAAGATAGGAAAGCAATCAATG---------TTTGTTTATTGAATACTCTTACTGGAGCTGAATTAAATT-----------TAATGAATAGCTAAGCATCAAATACAATTT--AGTCAAGTGAATAAAGCCCTTG----TGAAGTATAATATGGTTATGTTTAAGCTTA------------AAAGTAGTTCCTGTGTTTTCAGTAG---TGTTTAAATTACTT--TA--AAGAAAATCATTACATTTAAATGACATAAAGTATGTAACATAT--GCATAACACATGGAAAATTGTGAGTTCTCAATGCATTTTATGTTCTCT-CC-TCTTCTTACCTCCTAACCTATCTTAATAAACAGTTTAGAAAGAAATATTACTTTTA--CTCCAATTATTTTAAATTTGGCCTGAAAATGCTGAG-----TAATATAGAGGTTATAAGAGTTGAATCTAAATCTGCAATTGATCTAAAGAAATTTTGCTTC-TTTTAGTAACATCTTTACGTG----TTTTTTTGAGTTGTGTCTTTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5370518  967 +   6154872 AACCAGCGAGCCATGAGAAGGCTGCCATCCTTAGGCAGAACCAATAATTCATGATGACTACATAGTGGAGGGGTCTGCAAACAGCCACATATCTGTCAAAGGACATAACAGCCAGAAGGAGACACTCTGTAGCACCTAGGGCCAGGAAGATGATGAGTTGGGCCACACAGCCAGCATAGCTGATGGTCTTTTTGTTGCAACCAATATTTACCAACATATGAGGGGCTGTAGTTGTGGTATAGCAGAGATCTAAGACGGAGAGATTAGTGAGAAAGAAATACATGGGAGTATGAAGTTTGGGATCCAGAATGCACACCATCATGATGGACACATTGCCAAATATGGTGATTGTGTATGATACTAACAGGACCACAAAAAGGGGCATTTGTAGCCAAGCCCTATCTGAGAAGCCAAGTAGTATAAACTCTTTTGGGGAGCTCTCATTTGCCCAATTCATGATGACTCATTTATTTCGCACTCCTAAAAAAATGTAAGATAGGAAAGCAATCAATG---------TTTGTTTATTGAATACACTTACTGGAGCTGAATTAAATT-----------TAATGAATAGCTCAGCATCAAATACAATTTACAGTCAAGTGAATAAAGCCCTTG----TGAAGTATAATATGGTTACGTTTAAGCTTA------------AAAGTAGTTCCTGTGTTTGCAGTAG---TGTTTAAATTACTT--TA--AAGAAAATCATTACATTTAAATGACATAAAGTATGTAACATAT--GCATAACACATGGAAAATTGTGAGTTCTCAATGCATTTTATGTTCTCT-CC-TCTTCTTACCTCCTAACCTATCTTAATAAACAGTTTAGAAAGAAATATTACTTTTA--CTCCAATTATTTTAAATTTGGCCTGAAAATGCTGAG-----TAATATAGAGGTTATAAGAGTTGAATCTAAATCTGCAATTGATCTAAAGAAATTTTGCTTC-TTTTAGTAACATCTTTACGTG----TTTTTTTGAGTTGTGTCTTTCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29531860  964 + 172585720 AACCAGTGAACCATGAGAAGGCTGCCATCCTTAGGCAGAACCAATAATTCATGATGACTACATAGTGGAGGGGTCTGCAAACAGCCACATATCTGTCAAAGGACATAACAGCCAGAAGGAGACACTCAGTAGCACCTAGGGCCAGGAAGATGATGAGTTGGGCCACACAGCCAGCATAGCTGATGGTCTTTTTGTTGTAACCAATATTTACCAACATATGAGGGACTGTAGTTGTGGTATAGCAGAGATCTAAGATGGAGAGATTAGTGAGAAAGAAATACATGGGCGTATGAAGTTTGGGATCCAGAATGCACACCATCATGATGGACACATTGCCAAATATGGTGATTGTGTATGATATTAACAGGACCACAAAAAGGGGCATTTGTAGCCAAGCCCTATCTGAGAAGCCAAGTAGTGTAAACTCTTTTGGGGAGCTCTCATTTGCCCAATTCATGATGACTCTCTTATTTCGCACTCCTAAAAAAATGTAAGATAGGAAAGCAATCAATG---------TATGTTTATTGAATACTCTTATTGGAACGGAATTAAATT-----------TAATAAATAGCTCATCATCAAACACAATTTACAGTCAATTGAATAAAGCCCGTT----TGAAATATAATATGATTACGTTTAAGCTTA------------AAAGTAGTTTCTGTGTTTTCAGTAG---TGTTTAAATTACTT--CA--AAGGAAATCATTACATTTAAATAACATAAAGTATGTAACATAT--GCATAACACATGGAAAATTGTGAGTTCCCAATGCATTTTATGTTCTCT-CC-TCTTCTTACTTCCTAACCTACCTTAATAAACAGTTTAGAAAGAAATACTACTTTTA--CTCCAATTATTTTAAATTTGGACTGAAAATGC---------TAATATAGAGGTTATAAGTGTTGAATCTAAATCTGCAATTGATCTAAAGAAATTTTGCTTC-TTTCAGTAACATCTCGATGTGA---TTTTTTTGAGTTGTGTCTTTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29192977  964 - 170955103 AACCAGTGAACCATGAGAAGGCTGCCATCCTTAGGCAGAACCAATAATTCATGATGACTACATAGTGGAGGGGTCTGCAAACAACCACATATCTGTCAAAGGACATAACAGCCAGAAGGAGACACTCAGTAGCACCTAGGGCCAGGAAGATGATGAGTTGGGCCACACAGCCAGCATAGCTGATGGTCTTTTTGTTGTAACCAATATTTACCAACATATGAGGGACTGTAGTTGTGGTATAGCAGAGATCTAAGATGGAGAGATTAGTGAGAAAGAAATACATGGGCGTATGAAGTTTGGGATCCAGAATGCACACCATCATGATGGACACATTGCCAAATATGGTGATTGTGTATGATATTAACAGGACCACAAAAAGGGGCATTTGTAGCCAAGCCCTATCTGAGAAGCCAAGTAGTGTAAACTCTTTTGGGGAGCTCTCATTTGCCCAATTCATGATGACTCTCTTATTTCGCACTCCTAAAAAAATGTAAGATAGGAAAGCAATCAATG---------TATGTTTATTGAATACTCTTATTGGAACGGAATTAAATT-----------TAATAAATAGCTCATCATCAAACACAATTTACAGTCAATTGAATAAAGCCCGTT----TGAAATATAATATGATTACGTTTAAGCTTA------------AAAGTAGTTTCTGTGTTTTCAGTAG---TGTTTAAATTACTT--CA--AAGGAAATCATTACATTTAAATAACATAAAGTATGTAACATAT--GCATAACACATGGAAAATTGTGAGTTCCCAATGCATTTTATGTTCTCT-CC-TCTTCTTACTTCCTAACCTACCTTAATAAACAGTTTAGAAAGAAATACTACTTTTA--CTCCAATTATTTTAAATTTGGACTGAAAATGC---------TAATATAGAGGTTATAAGTGTTGAATCTAAATCTGCAATTGATCTAAAGAAATTTTGCTTC-TTTCAGTAACATCTCGATGTGA---TTTTTTTGAGTTGTGTCTTTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2200508  962 -   2996164 AACCAGTGAACCATGAGAAGGCTGCCATCCTTAGGCAGAACCAATAATTCATGATGACTACATAGTGGAGGGGTCTGCAAACAGCCACATATCTGTCAAAGGACATAACAGCCAGAAGGAGACACTCAGTAGCACCTAGGGCCAGGAAGATGATGAGTTGGGCCACACAGCCAGCATAGCTGATGGTCTTTTTGTTGTAACCAATATTTACCAACATATGAGGGACTGTAGTTGTGGTATAGCAGAGATCTAAGATGGAGAGATTAGTGAGAAAGAAATACATGGGCGTATGAAGTTTGGGATCCAGAATGCACACCATCATGATGGACACATTGCCAAATATGGTGATTGTGTATGATATTAACAGGACCACAAAAAGGGGCATTTGTAGCCAAGCCCTATCTGAGAAGCCAAGTAGTGTAAACTCTTTTGGGGAGCTCTCATTTGCCCAATTCATGATGACTCACTTATTTCGCACTCCTAAAAAAATGTAAGATAGGAAAGCAATCAATG---------TATGTTTATTGAATACTCTTATTGGAACGGAATTAAATT-----------TAATAAATAGCTCATCATCAAACACAATTTACAGTCAATTGAATAAAGCCCGTT----TGAAATATAATATGATTACGTTTAAGCTTA------------AAAGTAGTTTCTGTGTTTTCAGTAG---TGTTTAAATTACTT--CA--AAGGAAATCATTACATTTAAATAACATAAAGTATGTAAC--AT--GCATAACACATGGAAAATTGTGAGTTCCCAATGCATTTTATGTTCTCT-CC-TCTTCTTACTTCCTAACCTACCTTAATAAACAGTTTAGAAAGAAATACTACTTTTA--CTCCAATTATTTTAAATTTGGACTGAAAATGC---------TAATATAGAGGTTATAAGTGTTGAATCTAAATCTGCAATTGATCTAAAGAAATTTTGCTTC-TTTCAGTAACATCTCGATGTGA---TTTTTTTGAGTTGTGTCTTTCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2066242  961 -   2157725 AACCAGTGAACCATGAGAAGGCTGCCATCCTTAGGCAGAACCAATAATTCATGATGACTACATAGTGGAGGGGTCTGCAAACAGCCACATATCTGTCAAAGGACATAACAGCCAGAAGGAGACACTCAGTAGCACCTAGGGCCAGGAAGATGATGAGTTGGGCCACACAGCCAGCATAGCTGATGGTCTTTTTGTTGTAACCAATATTTACCAACATATGAGGGACTGTAGTTGTGGTATAGCAGAGATCTAAGATGGAGAGATTAGTGAGAAAGAAATACATGGGCGTACGAAGTTTGGGATCCAGAATGCACACCATCATGATGGACACATTGCCAAATATGGTGATTGTGTATGATATTAACAGGACCACAAAAAGGGGCATTTGTAGCCAAGCCCTATCTGAGAAGCCAAGTAGTATAAACTCTTTTGGGGAGCTCTCATTTGCCCAATTC---ATGACTCACTTATTTTGCACTCCTAAAAAAATGTAAGATAGGAAAGCAATCAATG---------TATGTTTATTGAATACTCTTATTGGAACGGAATTAAATT-----------TAATAAATAGCTCATCATCAAACACAATTTACAGTCAATTGAATAAAGCCCGTT----TGAAATATAATATGATTACGTTTAAGCTTA------------AAAGTAGTTTCTGTGTTTTCAGTAG---TGTTTAAATTACTT--CA--AAGGAAATCATTACATTTAAATAACATAAAGTATGTAACATAT--GCATAACACACGGAAAATTGTGAGTTCCCAATGCATTTTATGTTCTCT-CC-TCTTCTTACTTCCTAACCTACCTTAATAAACAGTTTAGAAAGAAATACTACTTTTA--CTCCAATTATTTTAAATTTGGACTGAAAATGC---------TAATATAGAGGTTATAAGTGTTGAATCTAAATCTGCAATTGATCTAAAGAAATTTTGCTTC-TTTCAGTAACATCTCGATGTGA---TTTTTTTGAGTTGTGTCTTTCTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28496180  964 -  71996105 AACCAGTGAACCATGAGAAGGCTGCCATCCTTAGGCAGAACCAATAATTCATGATGACTACACAGTGGAGGGGTCTGCAAACAGCCACATATCTGTCAAAGGACATAACAGCCAGAAGGAGACACTCAGTAGCACCTAGGGCCAGGAAGATGATGAGTTGGGCCACACAGCCAGCATAGCTGATGGTCTTTTTGTTGTAACCAATATTTACCAACATATGAGGGACTGTAGTTGTGGTATAGCAGAGATCTAAGATGGAGAGATTGGTGAGAAAGAAATACATGGGCGTATGAAGTTTGGGATCCAGAATGCACACCATCATGATGGACACATTGCCAAACATGGTGATTGTGTATGATATTAACAGGACCACAAAAAGGGGCATTTGTAGCCAAGCCCTATCTGAGAAGCCAAGTAGTATAAACTCTTTTGGGGAGCTCTCATTTGCCCAATTCATGATGACTCACTTATTTCGCACTCCTAAAAAAATGTAAGATAGGAAAGCAATCAATG---------TATGTTTATTGAATACTCTTATTGGAACGGAATTAAATT-----------TAATAAATAGCTCATCATCAAACACAATTTACAGTCAATTGAATAAAGCCCGTG----TGAAATATAATATGGTTACGTTTAAGCTTA------------AAAGTAGTTTCTGTGTTTTCAGTAG---TGTTTAAATTACTT--CA--AAGGAAATCATCACATTTAAATAACGTAAAGTATGTAACATAT--GCATAACACATGGAAAATTGTGAGTTCCCAATGCATTTTATGTTCTCT-CC-TCTTCTTACTTCCTAACCTACCTGAACAAACAGTTTAGAAAGAAATACTACTTTTA--CTCCAACTATTTTAAATTTGGACTGAAAATGC---------TAATATAGAGGTTATAAGTGTTGAATCTAAATCTGCAATTGATCTAAAGAAATTTTGCTTC-TTTCAGTAACATCTCGATGTGA---TTTTTTTGAGTTTTGTCTTTCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2209444  961 +   2316924 AACCAGTGAACCATGAGAAGGCTGCCATCCTTAGGCAGAACCAATAATTCATGATGACTACATAGTGGAGGGGTCTGCAAACAGCCACATATCTGTCAAAGGACATAACAGCCAGAAGGAGACACTCAGTAGCACCTAGGGCCAGGAAGATGATGAGTTGGGCCACACAGCCAGCATAGCTGATGGTCTTTTTGTTGTAACCAATATTTACCAACATATGAGGGACTGTAGTTGTGGTATAGCAGAGATCTAAGATGGAGAGATTAGTGAGAAAGAAATACATGGGCGTATGAAGTTTGGGATCCAGAATGCACACCATCATGATGGACACATTGCCAAATATGGTGATTGTGTATGATATTAACAGGACCACAAAAAGGGGCATTTGTAGCCAAGCCCTATCTGAGAAGCCAAGTAGTATAAACTCTTTTGGGGAGCTCTCATTTGCCCAATTC---ATGACTCACTTATTTCGCACTCCTAAAAAAATGTAAGATAGGAAAGCAATCAATG---------TGTGTTTATTGAATAATCTTATTGGAACGGAATTAAATT-----------TAATAAATAGCTCATCATCAAACACAATTTACACTCAATTGAATAAAGCCCGTT----TGAAATATAATATGGTTACGTTTAAGCTTA------------AAAGTAGTTTCTGTGTTTTCAGTAG---TGTTTAAATTACTT--CA--GAGGAAATCATTACATTTAAATAACGTAAAGTAAGTAACATAT--GCATAACACATGGAAAATTGTGAGTTCCCAATGCATTTTATGTTCTCT-CC-TCTTCTTACTTCCTAACCTACCTTAATAAACAGTTTAGAAAGAAATACTACTTTTA--CTCCAATTACTTTAAATTTGGACTGAAAATGC---------TAATATAGAGGTTATAAGTGTTGAATCTAAATCTGCAATTGATCTAAAGAAATTTTGCTTC-TTTCAGTAACATCTCGATGTGA---TTTTTTTGAGTTGTGTCTTTCTC
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171572987  958 - 171630274 AACCAGTAAGCCAGGAGAAGGCCACCATCCTTAGGCGGAACCTTTAATTCATGATGACTACGTAGTGAAGGGGTCTGCAAACAGCCACAAATCTGTCAAAGGACGTAACAGCCCGAAGGAGACACTCAGTAGCACCTAAGGCCAGGACGATGATGAGTTGG--------GCCAACATAGCTGATGGTCTCTTTGTTGCGACCCATATTTACCAACATAGGAGGACCTGTAGTTGTGGTGTAGCAGAGACCTAAGATGGAGAGATTAGTGAGAAAGAAACACATGGGTGTATGAAGTTTGGGACCCAGAATGCACAGCATCATGATGGACACATTGCCAAGGATGCTGATTGTGTGTGATATTAACAGGACCACAGAAAGGGGCATTTGTAGCCAAGGCTTATCTGAGAAGCCAAGTAGTACAAATTC-TTTGGGGAGCTTTCATTT-TCCAATTCATGATGGTGCACTTATTTTGCACTCCT-GAAATCTCTAAGATAGGAAAGCAATCAATGTATGTGTATTATGTTTATTGAATAGTCTTGTTGGAACTGGATTAAATT-----------TAATGAATAGTTCAGCATCAAATACAATTTATAGTCAGTTGAATAAAGCTC-TG----TGAAGTATGATACTGTTACGTTTAAGCTTA------------AAAGTAGTTTCTGTGTTTTCAGTAG---TGTTTAAATTACTT--TA--AAGAAAATTATTACATTTAAATGGTGTAAGGTATGTAACATAT--GCATAACACATGGAAAATTGTGAGTTCTCAATGCATTTTATGTTCTCT-CC-TCTTCTTACCTTCTATCC-------ATAAACAGTTTAGGAAGAAATGCTACCTTTA--GTCCAATTATGTTAAATTTGGACTGAAAATGCTGAG-----TAATGTAGAGGTTATGACAGTTGAGTGTAAATCTGAAATCCATCTAAACAAATTTTGCTTCTTTTTAGTAACATCTT-ATGTGA---TTTTTTTGAGTTGTGTCTTTCGC
i calJac3.chr4             M 252 C 0
s otoGar3.GL873742           1675275  971 -   2232465 AGCCAGTGAGCCATGAGCAGGCTGCCATCCTTAGGCAGAACAAATGATTCATGATGACTACATAGTGGAGGGGTCTGCAAATTGCCACAAATCTGTCAAAGGACATAACAGCCAGAAGGAGACACTCAGTAGCGCCTAGTGCCAGGAAGATGATGAGCTGGGCCACACAGCCACCATAGCTGATGGTCTTTTTGTTGTGAGCAATATTTACCAACATATGAGGGACTGTAGTTGTGGTATAACAGAGATCTAAGATGGAGAGATTAGTGAGAAAGAAATACATAGGTGTATGAAGTTTGGGATCCAGAATGCACACCATCATGATGGACACATTGCCAAAGATGGTGACTGTGTATGATATTAGCAGGACCACAAAAAGGGGCATTTGTAGCCAGGACCTCTCTGAGAAGCCAAGTAGTATAAACTCTTGTGGAGAGCTCTCATTTGCCCAATTCATGATGATTCACTTATTTTTCACTCCT-AAAAAATATAATACAGGAAAGCAGTCAATA---------GATATTTATTGAGTACTCTTACTGAAACTAAACTGAATTTAGATTAATTATAATGAATAGCTTGGCACCAAATACAATTCAAAGTCTAATTTACAAA-----TG----TGAAATGCACAGTGGTTATTTTATGGTTAC------------AAAGTAGTTACTGTGTTTTCATTAG---TGTTTGAATTACTTTGTA--AAGTGAATCACTACATTTAAATGACAT-ATGTATGTGACATCT--GCATAACACATGGAAAATTGTCAGTTTTCAATACATTTCACGTTTCCTCCC-TCTTCTTACCTCCTAACC----TTAAGAAACAATCCAGTAATACATACTGCTTATA--ATCCAATTATTTTTAATTCAGAATGAAAATGCTGAG-----TACTACAGAAGCTATAAGAATTGCATCTAAATCTGCAACAGATA-GAAGAAATTCTGCTTG-TTTTAGTAACATCTTTATGTGA--TTTTTTTTGAATTGTAtctgtctc
i otoGar3.GL873742         C 0 I 729
s dasNov3.JH570037            349204 1005 -    859332 AACCAGAGAGCCACAAGAGAGCAGCCGTCTTTAGGCAGAACCCAGGACTCATGATGACTACATAGTGAAGGGGTCTGCAGATTGCCACAAACCTGTCAAAGGACATAACGGTCAGGAGGAGGCACTCGGTGGACCCCAGGGCCAGGAAGATGATGAGTTGGGCCACACAGCCACCATAGCTGATGGTCTTTTTATTCTGACAAATATTTGCCAGCATGTGAGGGACAGTGCTTGTGGTATAACATAGATCCAAGATGGAAAGATTAGTGAGAAAGAAGTACATGGGTTTATGAAGTTTGGGGTCCTGAATGCATGCCATCATGATGGACACATTTCCGAAGATGGTGAATGTGTAGGATGTCAACAGAACCACAAGAAGGGGCATCTGCAGCCAGGGCCTGTCTGAGAAGCCGAGAAGTATGAACTCTTTTGAGGAGCTCTCATTTGCCCAATTCATGATGATTCACTTAGTTTTAATTACCTAAATTACATAA---AAGAGAACAGTCAATA---------GATACTCATTGAAGACTCCCATTTGAACTGAACTGAATGTAGATTAATTACACTGCATAGATCAGTAACAAGTATAATT-ACAGTCAGTTAAATGGAATTCTTGGGAATGCAGTATCCTAAGGAAGCCATTACACTGATTTCATAATGGTAAAAAAGTTCCTCTGTTTTCAGTAGTTTTATTTGAGTGACTT--TATGTAGTAAATCATTACA-TTAAAAGTCATAAGGTATAAAAATTATGAGCATACACTATGGAAAACTGTCAATGTTCAATACATTTCAATCCCTCT-CCTTTTTCTTACCTGCTAACCTGCCTTCATAAACATTTTAATAATGAATCCTGCTTTGAATATCCAATTATGTTTAACTCAGGTTCACAATGTCGAGCAAATTCATATAGAAACT-TATGAGTTTCACCTAAATCTGCAATGGATCTGTA-AACGTGTGCTTG-TTT-AGTAACATCTTCATGTGACTTTTTTTTTTGGTTGCCTCTTTATA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=611925.000000
s hg38.chr6_GL000254v2_alt    353488 123 +   4827813 CTAAATGCCATGCATGTAGGTCCATTTCCACAAAGAACTACCGTGGGTATT----------------AGTAATAAAATTATGGCT--ACTTGTGATATATAGTAATGACCACAGATGT-------------------------------CATCTCCCCATCTGCAAATACCT
s panTro5.chr6              29328129 123 + 175400573 CTAAATGCCATGCATGTAGGTCCATTTCCACAAAGAACTACCGTGGGTATT----------------AGTAATAAAATTATGGTT--ACTTGTGATATATAGTAATGACCACAGGTGT-------------------------------CATCTCCCCATCTGCAAATACCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29573876 123 + 173848474 CTAAATGCCATGCATGTAGGTCCATTTCCACAAAGAACTACCGTGGGTATT----------------AGTAATAAAATTATGGTT--ACTTGTGATATATAGTAATGACCACAGGTGT-------------------------------CATCTCCCCATCTGCAAATACCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5371485 123 +   6154872 CTAAATGCCATGCATGTAGGTCCATTTCCACAAAGAACTACCGTGGGTATT----------------AGTAATAAAATTATGGTT--ACTTGTGATATATAGTAATGACCACAGGTGT-------------------------------CATCTCCCCATCTGCAAATACCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29532824 123 + 172585720 CTAAATGCCATGCATGTAGGTCCATTTCCATAAAGAACTACCATGGGTATT----------------AGTAATAAAATTATGGTT--ACTTGTGATATACAGTAATGACCATAGGTGT-------------------------------CATCTCCCCATCTGCAAATACCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29193941 123 - 170955103 CTAAATGCCATGCATGTAGGTCCATTTCCATAAAGAACTACCATGGGTATT----------------AGTAATAAAATTATGGTT--ACTTGTGATATACAGTAATGACCATAGGTGT-------------------------------CATCTCCCCATCTGCAAATACCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2201470 123 -   2996164 CTAAATGCCATGCATGTAGGTCCATTTCCATAAAGAACTACCATGGGTATT----------------AGTAATAAAATTATGGTT--ACTTGTGATATACAGTAATGACCATAGGTGT-------------------------------CATCTCCCCATCTGCAAATACCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2067203 123 -   2157725 CTAAATGCCATGCATGTAGGTCCATTTCCATAAAGAACTACCATGGGTATT----------------AGTAATAAAATTATGGTT--ACTTGTGATATACAGTAATGACCATAGGTGT-------------------------------AATCTCCCCATCTGCAAATACCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28497144 123 -  71996105 CTAAATGCCATGCATGTAGGTCCATTTCCATAAAGAACTACCATGGGTATT----------------AGTAATAAAATTATGGTT--ACTTGTGATATACAGTAATGACCATAGGTGT-------------------------------CATCTCCCCATCTGCAAATACCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2210405 123 +   2316924 CTAAATGCCATGCATGTAGGTCCATTTCCATAAAGAACTACCATGGGTATT----------------AGTAATAAAATTATGGTT--ACTTGTGATATACAGTAATGACCATAGGTGT-------------------------------AATCTCCCCATCTGCAAATACCT
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171573945 164 - 171630274 CTAAATGTCATGCATGTGGGTCCATTTCCACAAAAAACTA---TGGGTATTAGATGCTTCGATTC--AGTAAT-AAATTATGGTT--ACTCGTGAGATACAGTAATTACCACAGGTGTTAACAACATGGGTGAAAATATACCACATTTGCATATTCCCATCTGCAAATACCT
i calJac3.chr4             C 0 C 0
s dasNov3.JH570037            350209 137 -    859332 CTAAATGATATTTATGC-TGCCCATCTCCACAGAAAAATATATTAGATATT---CTGTTTGATTCAAGACCATACAATTTTGGGTTGACTTGTGATGTGCAGCGATAATCATCGGTGA-------------------------------CATTTCCCCTTCTCCAAATATCT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1676246 729 -   2232465 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=966208.000000
s hg38.chr6_GL000254v2_alt    353611 224 +   4827813 TAATTAAAATAGCAAAACTGATAACATAATTGTTGCTTTActtaacatgtgccagaaactgctcagtgtgtgaaatacattctttgtaattctcatcaaacc---cctc----acagtcatggtttgcattttattgcttctgtgattcagtaagaataaataatttg-------cacactcattattggtgaggtcaagactaacacctaggatttaaaga---------------------tcattctttcttttat
s panTro5.chr6              29328252 224 + 175400573 TAATTAAAATAGCAAAACTGATAACATAATTGTTGCTTTActtaacatgtgccagaaactgctcagtgtgtgaaatacattctttgtaattctcatcaaacc---cctc----acagtcatggtttgcattttattgcttctgtgattcagtaagaataaataatttg-------cacactcattattggtgaggtcaagactaacacctaggatttaaaga---------------------tcattctttcttttat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29573999 224 + 173848474 TAATTAAAATAGCAAAACTGGTAACATAATTGTTGCTTTActtaacatgtgccagaaactgctcagtgtgtgaaatacattctttgtaattctcatcaaacc---cctc----acagtcatggtttgcattttattgcttctgtgattcagtaagaataaataatttg-------cacactcattattggtgaggtcaagactaacacctaggatttaaaga---------------------tcattctttcttttat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5371608 224 +   6154872 TAATTAAAATAGCAAAACTGATAACATAATTGTTGCTTTACTTAACATGTGCCAGAAACTGCTCAGTGTGTGAAATACATTCTTTGTAATTCTCATCAAACC---CCTC----ACAGTCACGGTTTGCATTTTATTGCTTCTGTGATTCAGTAAGAATAAATAATTTG-------CACACTCATTATTGGTGAGGTCAAGACTAACACCTAGGATTTAAAGA---------------------TCATTCTTTCTTTTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29532947 188 + 172585720 TAATTAAAATAGTAAAACTGATAACATAAATGTTGCTTTGCTTAAAATGTGCCAGAAACTGC------------------------------------AACC---CCTC----ACAGTCATGGTTTACGTTTTATTACTTCTGTGATTCAGTAAGAATAAATAATTTG-------CACACTCATTAATAGCGAGGTGAAGACTAACACCTAGGATTTAAAGA---------------------CCATTCTTTCTTTTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29194064 188 - 170955103 TAATTAAAATAGTAAAACTGATAACATAAATGTTGCTTTGCTTAAAATGTGCCAGAAACTGC------------------------------------AACC---CCTC----ACAGTCATGGTTTACGTTTTATTACTTCTGTGATTCAGTAAGAATAAATAATTTG-------CACACTCATTAATAGCGAGGTGAAGACTAACACCTAGGATTTAAAGA---------------------CCATTCTTTCTTTTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2201593 188 -   2996164 TAATTAAAATAGTAAAACTGATAACATAAATGTTGCTTTGCTTAAAATGTGCCAGAAACTGC------------------------------------AACC---CCTC----ACAGTCATGGTTTACGTTTTATTACTTCTGTGATTCAGTAAGAATAAATAATTTG-------CACACTCATTAATAGCGAGGTGAAGACTAACACCTAGGATTTAAAGA---------------------CCATTCTTTCTTTTAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2067326 188 -   2157725 TAATTAAAATAGTAAAACTGATAACATAAATGTTGCTTTGCTTAAAATGCGCCAGAAACTGC------------------------------------AACC---CCTC----ACAGTCATGGTTTATGTTTTATTACTTCTGTGATTCAGTAAGAATAAATAATTTG-------CACACTCATTAATAGCGAGGTCAAGACTAACACCTAGGATTTAAAGA---------------------CCATTCTTTGTTTTAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28497267 188 -  71996105 TAATTAAAATAGTAAAACTGATAACATAAATGTTGCTTTACTTAAAATGCGCCAGAAACTGC------------------------------------AACC---CCTC----ACAGTCATGGTTTACGTTTTATTACTTCTGTGATTCAGTAAGAATAAATAATTTG-------CACACTCATTAATGGCGAGGTCAAGACTAACACCTAGGATTTAAAGA---------------------CCACTCTTTCTTTTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2210528 188 +   2316924 TAATTAAAATAGTAAAACTGATAACATAAATGTTGCTTTGCTTAAAATGCGCCAGAAACTGC------------------------------------AACC---CCTG----ACAGTCATGGTTTACGTTTTATTACTTCTGTGATTCAGTAAGAATAAATAATTTG-------CACACTCATTAATAGCGAGGTCAAGACTAACACCTAGGATTTAAAGA---------------------CCATTCTTTCTTTTAT
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171574109 224 - 171630274 TAATTAAAATAGTAAACCTGATAACACAGTTGTTACTTTACTTTGCATATGACAGATGCTGTTCAATGCCTGAAATACATCCTTTGTAATCATCACCAAACC---CCTC----ATAGTCATGGTTTACATTTTATTGTTTCTGTGATTCAGCAAGAATAAATAATTTG-------CACACTTATTAAAGGTGAGGTTAAGATTGACACCTAGGATTTAAAGA---------------------CCATTTATTTATTTAT
i calJac3.chr4             C 0 I 949
s otoGar3.GL873742           1676975 240 -   2232465 TAGTAGAACTATTTAAAAAAATAGTAAAACTAttgc---------catgtggcagacaccaatcagtgcctgaaatacattctttctaattctcaccaaaac---tctgataaacaggcatgatttacactttattgctcctgtggttcaatgagaataaataatttg-------tacactcagtaatggcgaggtaaagatttaaatccaggATTTGAATATGAATCccttccttccttccttccttctttccttcct
i otoGar3.GL873742         I 729 I 2
s dasNov3.JH570037            350346 222 -    859332 GAGTGAACATAGTAAAGCCTCCAGCCTAACCAGTGCATGAC-CAACATGGGGCAGACACCATTCAGTGCCTGAAACA-ATGCTTTCTATTCTTAATAAAACCAAGTTAA----AGAGGtatgatctgcatttcattgctactgtgacttagagagcttaaataacatgcttacaacccacttagcaatgctg-------ggctaaaactcagaacttaAAAA---------------------CCACTCTTTTTAC---
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=1878345.000000
s hg38.chr6_GL000254v2_alt    353835 423 +   4827813 accgtatttccccCTAAATACACAGATAGTACAATAAGAATGACTGCATACAGCACAAAAGTGGTCATAAA-TTAAAATAGAAACAA-ACCAAAAGTCATATATTCAAGTTGATTTTCTTCAGTCTGTAAAAGTCATCAGTTATTTAGTTATATTACCTAAGTGCACCTAAGTTTCTTCAGTCTACTTTGC--ATGTTTAAATGAAATGTCATCGAGGTGGTTTACACCATTTGAATTTGCAAGCATA-----AAAATA-----------------GAAAGATAGACTGAAGA-----GAGAAGAGAAAATAAGTATTGACACAATTTACCACAGAATAA------------------------------GATAACTTTTCCAGAGT-AAAAACACTGATATATAAAGTATAATTTGATAATGGAATGAATAAATGAAAATGAACAGAGATGACCTTGAGATTTTTAACTTCTTCCATTATATAT
s panTro5.chr6              29328476 423 + 175400573 accgtatttccccCTAAATACACAGATAGTACAATAAGAATGACTGCATACAGCACAAAAGTGGTCATAAA-TTAAAATAGAAACAA-ACCAAAAGTCATATATTCAAGTTGATTTTCTTCAGTCTGTAAAAGTCATCAGTTATTTAGTTATATTACCTAAGTGCACCTAAGTTTCTTCAGCGTACTTTGC--ATGTTTAAATGAAATGTCATTGAGGTGGTTTACACCATTTGAATTTGCAAGCATA-----AAAATA-----------------GAAAGATAGACTGAAGA-----GAGAAGAGAAAATAAGTATTGACACAATTTACCACAGAATAA------------------------------GATAACTTTTCCAGAGT-AAAAACACTGATATATAAAATATAATTTGATAATGGAATGAATAAATGAAAATGAACAGAGATGACCTTGAGATTTTTAACTTCTTCCATTATATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29574223 423 + 173848474 accgtatttccccCTAAATACACAGATAGTACAATAAGAATGACTGCATACAGCACAAAAGTGGTCATAAA-TTAAAATAGAAACAA-ACCAAAAGTCATATATTCAAGTTGATTTTCTTCAGTCTGTAAAAGTCATCAGTTATTTAGTTATATTACCTAAGTGCACCTAAGTTTCTTCAGCGTACTTTGC--ATGTTTAAATGAAATGTCATTGAGGTGGTTTACACCATTTGAATTTGCAAGCATA-----AAAATA-----------------GAAAGATAGACTGAAGA-----GAGAAGAGAAAATAAGTATTGACACAATTTACCACAGAATAA------------------------------GATAACTTTTCCAGAGT-AAAAACACTGATATATAAAATATAATTTGATAATGGAATGAATAAATGAAAATGAACAGAGATGACCCTGAGATTTTTAACTTCTTCCATTATATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5371832 424 +   6154872 ACCGTATTTCCCCCTAAATACACAGATAGTACAATAAGAATGACTGCATACAGCACAAAAGTGGTCATAAATTTAAAATAGAAACAA-ACCAAAAGTCATATATTCAAGTTGATTTTCTTCAGTCTGTAAAAGTCATCAGTTATTTAGTTATATTACCTAAGTGCACCTAAGTTTCTTCAGTCTACTTTGC--ATGTTTAAATGAAATGTCATTGAGGTGGTTTACACCATTTGAATTTGCAAGCATA-----AAAATA-----------------GAAAGATAGACTGAAGA-----GAGAAGAGAAAATAAGTATTGACACAATTTACCACAGAATAA------------------------------GATAACTTTTCCAGAGT-AAAAACACTGATATATAAAATATAATTTGATAATGGAATGAATAAGTGAAAATGAACAGAGATGACCTTGAGATTTTTAACTTCTTCCATTATATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29533135 412 + 172585720 ACCATATTTCCCCCTAAATACAC----AGTACAAAAAGAATGACTGCATACAGCACAAGAGTGGTCACAAA-TTAAAATAGAAACAA-ACCAAAAGTCATATGTTCAAGTTGATTTTCTTCAGTCTGTAAAAGTCATCAGTTATTTAGTTATATAACCTAAGTGCACTTAA-CTTCTTCAGTCTACTTTGC--ATGTTTAAATGAAATGTCATTGAGATAATTTACACCATTTGAATTTGCAAGCATA-----AAAAT---------------------TGATAGACTGAAGA-----GTGAAGAGAAAATAAATATTGACACAACTTAC--CAGAATGA------------------------------GACACCTTTTCCAGAGT-AAAAACAATGATGTATAAAATGTAATTTGATAATGGAATGTCTAAATGAAAATGAACAGAGATGACTTTAATATTTTTAATTTATTCCATTATATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29194252 412 - 170955103 ACCATATTTCCCCCTAAATACAC----AGTACAAAAAGAATGACTGCATACAGCACAAGAGTGGTCACAAA-TTAAAATAGAAACAA-ACCAAAAGTCATATGTTCAAGTTGATTTTCTTCAGTCTGTAAAAGTCATCAGTTATTTAGTTATATAACCTAAGTGCACTTAA-CTTCTTCAGTCTACTTTGC--ATGTTTAAATAAAATGTCATTGAGATAATTTACACCATTTGAATTTGCAAGCATA-----AAAAT---------------------TGATAGACTGAAGA-----GTGAAGAGAAAATAAATATTGACACAACTTAC--CAGAATGA------------------------------GACACCTTTTCCAGAGT-AAAAACAATGATGTATAAAATGTAATTTGATAATGGAATGTCTAAATGAAAATGAACAGAGATGACTTTAATATTTTTAATTTATTCCATTATATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2201781 412 -   2996164 ACCATATTTCCCCCTAAATACAC----AGTACAAAAAGAATGACTGCATACAGCACAAGAGTGGTCACAAA-TTAAAATAGAAACAA-ACCAAAAGTCATATGTTCAAGTTGATTTTCTTCAGTCTGTAAAAGTCATCAGTTATTTAGTTATATAACCTAAGTGCACTTAA-CTTCTTCAGTCTACTTTGC--ATGTTTAAATGAAATGTCATTGAGATAATTTACACCATTTGAATTTGCAAGCATA-----AAAAT---------------------TGATAGACTGAAGA-----GTGAAGAGAAAATAAATATTGACACAACTTAC--CAGAATGA------------------------------GACACCTTTTCCAGAGT-AAAAACAATGATGTATAAAATGTAATTTGATAATGGAATGTCTAAATGAAAATGAACAGAGATGACTTTAATATTTTTAATTTATTCCGTTATATAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2067514 412 -   2157725 ACCATATTTCCCCCTAAATACAC----AGTACAAAAAGAATGACTGCATACAGCACAAGAGTGGTCACAAA-TTAAAACAGAAACAA-ACCAAAAGTCATATATTCAAGTTGATTTTCTTCAGTCTGTAAAAGTCATCAGTTATTTAGTTATATAACCTAAGTGCACTTAA-CTTCTTCAGTGTACTTTGC--ATGTTTAAATGAAATGTCATTGAGATAATTTACACCATTTGAATTTGCAAGCATA-----AAAAT---------------------TGATAGACTGAAGA-----GTGAAGAGAAAATAAATATTGACACAACTTAC--CAGAATGA------------------------------GACACCTTTTCCAGAGT-AAAAACAATGATGTATAAAATGTAATTTGATAATGGAATGTCTAAATGAAAATGAACAGAGATGACTTTAATATTTTTAATTTATTCCATTATATAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28497455 442 -  71996105 ACCATATTTCCGCCTAAATACAC----AGTACAAAAAGAATGACTGCATACAGCACAAGAGTGGTCACGAA-TTAGAACAGAAACAA-ACCAAAAGTTATATATTCAAGTTGATTTTCTTCAGTCTGTAAAAGTCATCAGTTATTTAGTTATATAACCTAAGTGCACTTAA-CTTCTTCAGTCTACTTTGC--ATGTTTAAATGAAATGTCATTGAGATGATTTACACCATTTGAATTTGCAAGCATA-----AAATT---------------------TGATAGACTGAAGA-----GTGAAGAGAAAATAAATATTGACACAACTTAC--CAGAATTGTAAGTTCTTTTCCAGAGTAAAAACAATGATGATACCTTTTCCAGAGT-AAAAACAATGATGTATAAAATGTAATTTGATAATGGAATGTCTAAATGAAAATGAACAGAGATGACTTTAATATTTTTAACTTATTCCATTATATAT
i chlSab2.chr17            C 0 I 37
s manLeu1.NW_012104165v1     2210716 412 +   2316924 ACCATATTTCCCCCTAAATACAC----AGTACAAAAAGAATGACTGCATACAGCACAAGAGTGGTCACAAA-TTAAAACAGAAACAA-ACCAAAAGTCATATATTCAAGTTGATTTTCTTCAGTCTGTAAAAGTCATCCGTTATTTAGTTATACAACCTAAGTGCACTTAA-CTTCTTCAGTCTACTTTGC--ATGTTTAAATGAAATGTCATTGAGATAATTTACATCATTTGAATTTGCAAGCATA-----AAAAT---------------------TGATAGACTGAAGA-----GTGAAGAGAAAATAAATATTGACACAACTTAC--CAGAATGA------------------------------GACACCTTTTCCAGAGT-AAAAACAATGATGTATAAAATGTAATTTGATAGTGGAATGTCTAAATGAAAATGAACAGAGATGACTTTAATATTTTTAATTTATTCCATTATATAT
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1677217 422 -   2232465 cttccATTTCCACTCACATATACAGATAGCAC---AAGAATGACTACATACAACGCAATAGTGGTTACAAA-TTAAGACAGGAATAACATCAAAAATCATATATTCAAATTGATTTTCTTCAGTCTGTGAAAGTCA----TTACTTATTTATATATCCTTAGTGCACTGAAAGTTCTTCAGTCTACTTTACATATGTTTAAATGAAATGTCATTGAGATGACACACACTATTTGAATTTACAAGCACA-----AAAATA---------------CTGTTAGACAGACTGAAAA-----AAGAAGATAAAATAAGGATTAGCCCAATGGATCACAGAATGA------------------------------GATATTTTTTCTAGACTGAAAAACCGTGAAATATCAAATATAACTCGACAATAGAATGTCTAAAGGAGAATGAACAGAGATGGCTTTAAGACTTGTAACCTCTTTCACTATATGT
i otoGar3.GL873742         I 2 C 0
s dasNov3.JH570037            350568 438 -    859332 ATCCAATTTCCCC--AAGTTTTAAGACAGCAC---AAGAAGGACTACATGCAAC-----AGTGGCTCTAAA-GTAAAACAGGAACAGCACCCAAAATCAAATAACCAGTCTGATTATCTGCATTCTGTGGAAGTTGTCAGATACTGGTTTTCATGACCTACGTGCACCTGAATTTCTTCAGTCTATTTTGC--ATGTTTATGTGCAAGGTTTATGAGGTGAC-TACAGTTGTTGAATT---AAGCAGAATTTCAAAGTGTAATGAAAGAGGGCACTGCTAGGCAGACTTAAGAAAAAGATGAAATAAGAAGAAGGATTGACACATCTTACCCCAGGGTGA------------------------------GTTACCTTCTTCAGAGTGAGAAAAACTGAAAAGGGAAGTAGAGCTAGATATTGGAAAACTTACGTGAGAATGCATAGAGATGGCTGTAAGATTTGTAACTCTTTCCATCATATGT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=60300.000000
s hg38.chr6_GL000254v2_alt    354258 25 +   4827813 GATTTT-----------TTTTAGCTATAGATACACA
s panTro5.chr6              29328899 25 + 175400573 GATTTT-----------TTTTAGCTATGGATACACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29574646 25 + 173848474 GATTTT-----------TTTTAGCTATGGATACACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5372256 25 +   6154872 GATATT-----------TTTTAGCTATAGATACACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29533547 23 + 172585720 --GTTT-----------TTTAAGCTATAGATATACG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29194664 23 - 170955103 --GTTT-----------TTTAAGCTATAGATATACG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2202193 23 -   2996164 --GTTT-----------TTTAAGCTATAGATATACG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2067926 23 -   2157725 --GTTT-----------TTTTAGCTATAGATATACG
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2211128 23 +   2316924 --GTTT-----------TTTTAGCTATAGATATACG
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1677639 34 -   2232465 -AGTTTTAATTTTGGGCTTTTCATTATATATATAG-
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            351006 34 -    859332 AATTTT--ATTTTGACCTTTCACCTACAGCTATACA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I
e chlSab2.chr17             28497897 37 -  71996105 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=327221.000000
s hg38.chr6_GL000254v2_alt    354283 74 +   4827813 TTATTTTTT------GGCAAATAACAGTAATACACC-----TTTGGTTGAAAAATAGAAGAGAATATGAGATTAGGCTTTTTTGA
s panTro5.chr6              29328924 74 + 175400573 TTATTTTTT------GGCAAATAACAGTAATACACC-----TTTGCTTGAAAAATAGAAGAGAATATGAGATTAGGCTTTTTTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29574671 74 + 173848474 TTATTTTTT------GGCAAATAACAGTAATACACC-----TTTGCTTGAAAAATAGAAGAGAATATGAGATTAGGCTTTTTTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5372281 74 +   6154872 TTATTTTTT------GGCAAATAACAGTAATACACC-----TTTGGTTGAAAAATAGAAGAGAATATGAGATTAGGCTTTTTTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29533570 74 + 172585720 TTATTTCTT------GGCAAATAACAGTAATACACC-----TTTGGTTGAAAAATAAAAGAGAATATGACATTAGGCTTTTTTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29194687 67 - 170955103 TTATTTCTT------GGCAAATAACAGTAA------------TTGGTTGAAAAATAAAAGAGAATATGACATTAGGCTTTTTTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2202216 74 -   2996164 TTATTTCTT------GGCAAATAACAGTAATACACC-----TTTGGTTGAAAAATAAAAGAGAATATGACATTAGGCTTTTTTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2067949 74 -   2157725 TTATTTCTT------GGCAAATAACAGTAATACACC-----TTTGGTTGAAAAATAAAAGAGAATATGACATTAGGCTTTTTTGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28497934 74 -  71996105 TTATTTCTT------GGCAAATAACAGTAATACACC-----TTTGGTTGAAAAACAAAAGAGAATATGACATTAGGCTTTTTTGA
i chlSab2.chr17            I 37 C 0
s manLeu1.NW_012104165v1     2211151 74 +   2316924 TTATTTCTC------GGCAAATAACAGTAATACACC-----TTTGGTTGAAAAATTAAAGAGAATATGACATTAGGCTTTTTTGA
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1677673 84 -   2232465 TTGTTCTTTTTAAGGAACAGATATAAAAAATCAACCAGATATTTGATTGAAAAATATAAGAGGATATgagattagac-tttttga
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            351040 73 -    859332 TTATTTCTT------GGTAAATAATAGTAATAGAA------TTCAGCTGGAAAATGCAAGCAGATAGAAGACTTCAATTTTCAGA
i dasNov3.JH570037         C 0 I 1436
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=661883.000000
s hg38.chr6_GL000254v2_alt    354357 156 +   4827813 ATGTCCATGTAAATTTACaaaatgataaatatgtaaggtaatacatacattagataacttgatttagccactttataatgtacacatatatcaaaacatcatgttgtacactataaatatatacaatttttactcattaatacaa-ttttttatatc
s panTro5.chr6              29328998 156 + 175400573 ATGTCCATGTAAATTTACaaaatgataaatatgtaaggtaatacatacattagataacttgatttagccactttataatgtacacatatatcaaaacatcatgttgtacactataaatatatacaatttttactcattaatACAA-TTTTTTATATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29574745 156 + 173848474 ATGTCCATGTAAATTTACaaaatgataaatatgtaaggtaatacatacattagataacttgatttagccactttataatgtacacatatatcaaaacatcatgttgtacactataaatatatacaatttttactcattaatACAA-TTTTTTATATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5372355 156 +   6154872 ATGTCCATGTAAATTTACaaaatgataaatatgtaaagtaatacatacattagataacttgatttagccactttataat-tacacatatatcaaaacatcatgttgtacactataaatatatacaatttttactcattaatACAATTTTTTTATATC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29533644 156 + 172585720 ATGTTGAAGTAAATTTACaaaatgataactatgtaaggtaatacatacgttaaataacttgatttagccactttataatgtacacatgtatcaaaacatcatgttgtacactataaatatatacaatttttactcattaatAAAC-TTTTTTATGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29194754 156 - 170955103 ATGTTGAAGTAAATTTACaaaatgataactatgtaaggtaatacatacgttaaataacttgatttagccactttataatgtacacatatatcaaaacatcatgttgtacactataaatatatacaatttttactcattaatAAAC-TTTTTTATGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2202290 156 -   2996164 ATGTTGAAGTAAATTTACaaaatgataactatgtaaggtaatacatacgttaaataacttgatttagccactttataatgtacacatatatcaaaacatcatgttgtacactataaatatatacaatttttactcattaatAAAC-TTTTTTATGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2068023 156 -   2157725 ATGTTGAAGTAAATTTACaaaatgataactatgtaaggtaatacatacgttaaataacttgatttagccactttataatgtacacatatatcaaaacatcatgttgtacactataaatatatacaatttttagtcattaatAAAC-TTTTTTATGTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28498008 154 -  71996105 ATGTTGAAGTAAATTTACaaaatgataactatgtaaggtaatacatacgttaaataacttgatttagccactttataatgtacacatacatcaaaacatc--gttgtacactgtaaatatatacaatttttactcattaatAAAC-TTTTTTATGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2211225 156 +   2316924 ATGTTGAAGTAAATTTACaaaatgataactatgtaaggtaatacatacgttaaataacttgatttagccactttataatgtacacatatatcaaaacatcatgttgtacactataaatatatacaatttttactcattaatAAAC-TTTTTTATGTG
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1677757 153 -   2232465 atgtccctgtaaa-ttaaaaaattatgagtatgtgaagcaatgtatatgtta-atgattt-atttagctacttcacaatgtacacatggatcaaaacagcatgttgtacaccataaatatatataattttACTTCACAATAAAAT-ATTTTTATGTG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            351113 1436 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=1851804.000000
s hg38.chr6_GL000254v2_alt    354513 404 +   4827813 agaaaaagactacacagaaagataaaacataaatggcaagatagaaaaatatacaatgtttatggaaaaa-atggttattatattaaaatataaataattattacata---ataaatagaaaaagatcaaaagtccaat-ggaaaaaaatgagcaatggacataaataagcagtttggggaagaaaacaacataaaatgacagtgaaagtataaaagattataactttttcattattgaagaaacacaaataaaaacaagaagaaagtatcacattgtcttcctacttagtagcatt----aaaaaaaATCACTGTTAAAGGTtagctg-ttaggtacagtgcctctggagccagaatctgccagg-gttttattactggattgtgtga-tcctgggcaa-tgaatgaacattcttg
s panTro5.chr6              29329154 404 + 175400573 AGAAAAAGACTACACAGAAAGATAAAACATAAATGGCAAGATAGAAAAATATACAATGTTTATGGAAAAA--TGGTTattatattaaaatataaataattattacata---ataataagaaaaaGATCAAAAGTCCAAT-GGAAAAAAATGAGCAATGGACATAAATAAGCAGTTTGGGGAAGAAAACAACATAAAATGACAGTGAAAGTATAAAAGATTATAACTTTTTCATTATTGAAGAAACACAAATAAAAACAAGAAGAAAGTATCACATTGTCTTCCTACTTAGTAGCATT----AAAAAAAATCACTGTTAAAGGTtagctg-ttaggtagagtgcctctggagccagaatctgccagg-gttttattactggattgtgtga-tcctgggcaaatgaatgaacattcttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29574901 405 + 173848474 AGAAAAAGACTACACAGAAAGATAAAACATAAATGGCAAGATAGAAAAATATACAATGTTTATGGAAAAA-ATGGTTattatattaaaatataaataattattacata---ataataagaaaaaGATCAAAAGTCCAAT-GGAAAAAAATGAGCAATGGACATAAATAAGCAGTTTGGGGAAGAAAACAACATAAAATGACAGTGAAAGTATAAAAGATTATAACTTTTTCATTATTGAAGAAACACAAATAAAAACAAGAAGAAAGTATCACATTGTCTTCCTACTTAGTAGCATT----AAAAAAAATCACTGTTAAAGGTtagctg-ttaggtagagtgcctctggagccagaatctgccagg-gttttattactggattgtgtga-tcctgggcaaatgaatgaacattcttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5372511 405 +   6154872 AGAAAAAGACTACACAGAAAGATAAAACATAAATGGCAAGATAGAAAAATATACAATGTTTATGGAAAAA-ATGGTTattatattaaaatataaataattattacata---ataataagaaaaaGATCAAAAGTCCAAT-GGAAAAAAATGAGCAATGGACATAAATAAGCAGTTTGGGGAAGAAAACAACATAAAATGACAGTGAAAGTATAAAAGATTATAACTTTTTCATTATTGAAGAAACACAAATAAAAACAAGAAGAAAGTATCACATTGTCTTCCTACTTAGTAGCATT----AAAAAAAATCACTGTTAAAGGTtagctg-ttaggtacagtgcctctggagccagaatctgccagg-gttttattactggattgtgtga-tcctgggcaaatgaatgaacattcttg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29533800 406 + 172585720 AGAAAAAGACTACACAGAAAGATAAAACATAAATGGCAAGACAGAAAAATACACAATGTTTATGGAAAAA-ATGGTTATTATTTtaaaatataaagaataattacata---ataataagaaaaagatcaaaagtccaatagaaaaaaaatgagcaatggacataactaagcagtttggggaagaaaacaacataaaatgatggtaaaaatataaaagattataac-ttttcattattgaagaaacacaaatagaaacAAGAAGAAAGCATCACATTGTCTTTCCATTTAGTAGCATT---AAAAAAAAATCACTGTTAAAAGTtagctg-ttaggtacagtgcctctggagctagaatctgccagg-ttttttttactggattgtgtga-tcctgggcaaatggatgaacatccttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29194910 406 - 170955103 AGAAAAAGACTACACAGAAAGATAAAACATAAATGGCAAGACAGAAAAATACACAATGTTTATGGAAAAA-ATGGttattattttaaaatataaagaataattacata---ataataagaaaaagatcaaaagtccaatagaaaaaaaatgagcaatggacataactaagcagtttggggaagaaaacaacataaaatgatggtaaaaatataaaagattataac-ttttcattattgaagaaacacaaatagaaacaagaagaaagcatcacattgtctttccatttagtagcatt---aaaaaAAAATCACTGTTAAAAGTtagctg-ttaggtacagtgcctctggagctagaatctgccagg-ttttttttactggattgtgtga-tcctgggcaaatggatgaacatccttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2202446 407 -   2996164 AGAAAAAGACTACACAGAAAGATAAAACATAAATGGCAAGACAGAAAAATACACAATGTTTATGGAAAAA-ATGGTTATTATTTTAAAATATAAAGAATAATTACATA---ATAATAAGAAAAAGATCAAAAGTCCAATAGAAAAAAAATGAGCAATGGACATAACTAAGCAGTTTGGGGAAGAAAACAACATAAAATGATGGTAAAAATATAAAAGATTATAAC-TTTTCATTATTGAAGAAACACAAATAGAAACAAGAAGAAAGCATCACATTGTCTTTCCATTTAGTAGCATT---AAAAAAAAATCACTGTTAAAAGTtagctg-ttaggtacagtgcctctggagctagaatctgccaggtttttttttactggattgtgtga-tcctgggcaaatggatgaacatccttg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2068179 406 -   2157725 AGAAAAAGACTACACAGAAAGATAAAACATAAATGTCAAGACAGAAAAATACACAATGTTTATGGAAAAA-ATGGTTATTATTTTAAAATATAAAGAATAATTACATA---ATAATAAGAAAAATGTCAAAAGTCCAATAGAAAAAAAATGAGCAATGGACATAACTAAGCAGTTTGGGGAAGAAAACAACATAAAATGATGGTAAAAATATAAAAGATTATAAC-TTTTCATTATTGACGAAACACAAATAGAAACAAGAAGAAAGCATCACATTGTCTTTCTATTTAGTAGCATTA--AAAAAAAAATCACTGTTAAAAGTtagctg-ttaggtacagtgcctctggagctagaatctgccagg-tttttattactggattgtgtga-tcctgggc-aatggatgaacatccttg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28498162 406 -  71996105 AGAAAAAGACTACATAGAAAGATAAAACATAAATGGCAAGACAGAAAAATATACAATGTTTATGGAAAAA-ATGGTTATTATTTtaaaatataaagaattattacata---gtaataagaaaaagatcaaaagtccaatagaaaaaaaatgagcaatggacataactaagcagtttggggaagaaaacaacataaaatgatggtaaaaatataaaagattataac-ttttcattattgaagaaacacaaataaaaacAAGAAGAAAGCATCACATTGTCTTTCTATTTAGTAGCATT---AAAAACAAATCACTGTTAAAAGTTAGCTG-TTAGGTACAGTGCCTCTAGAGCTAGAATCTGCCAGG-TTTTTATCACTGGATTGTGTGA-TCCTGGGCAAATGGATGAACATCCTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2211381 405 +   2316924 AGAAAAAGACTACACAGAAAGATAAAACATAAATGGCAAGACAGAAAAATACACAATGTTTATGGAAAAA-ACGGTTATTATTTTAAAATATAAAGAATAATTACATA---ATAATAAGAAAAAGATCAAAAGTCCAATAGAAAAAAAATGAGCAATGGACATAACTAAGCAGTTTGGGGAAGAAAACAACATAAAATGATGGTAAAAATATAAAAGATTATAAC-TTTTCATTATTGAAGAAACACAAATAGAAACAAGAAGAAAGCATCACATTGTCTTTCTATTTAGTAGCATT---AAAAAAAAATCACTGTTAAAAGTtagctg-ttaggtacagtgcctctggagctagaatctgccagg-tttttattactggattgtgtga-tcctgggc-aatggatgaacatccttg
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1677910 377 -   2232465 AGCAAAAGACTATATACAAAGATAAAAGACAAATGACAAAGTTGAAAAATGTACAGTGTTTATGGCAGAA-ATGGttattattttaatacataaaga---attacata---ataatgagaaaaataacaaaagcccaatagaaaacaa-------------------gagtaattagtagaagaa--------aaaataacagtgaaaatagaaaata-taggcc-ttctcatcatt-aaaaaacacaaatcaaaacagtaagaaattactacattgtttctccACTTGGTAATATTAAGAAAAAAAAATCACCTTTTAAAGTAagcag-gtaagaacactgcttctggagctagaatctgccagt-gttttctttctgagctatgtag-tcctgggcatgtggataaacacccttc
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            352549 382 -    859332 aaaaaatGACCATATGCAAAGATAAAAGATAAATGACAAGATGAAGAAATATGCAGTTCTAATAGCAAAATTTGGtta-----ataaaatataagtaattattgtataattattatgaaaaaaagacaaaaagtccaagagaaaaaaaataagcaatgtatataaataaatgatttggagaagaa------acaaaataacagcaaacagtaaaaaaaatgcaactctcccatcactaaagaaacacaattccaaacaagtaaatggt---ccattctctatccatttgTGCATGTT-TTATAAAAAAATCACCTCGAAAATTTGCCAGTTTGGGAAAACTTCCTCTGGAGCCACAGTCTGCCCAA--------------------TGACTTCTGAACAAAAAGGTGGACATTCTTC
i dasNov3.JH570037         I 1436 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I
e nomLeu3.chr1a             74378023 5146 + 122973662 I

a score=921876.000000
s hg38.chr6_GL000254v2_alt    354917 190 +   4827813 tgctacat----taaaaaacaatctctgacttga---------------------------------------taaaaagagag-----------------------------------tattgtgaagctcaagtgagacaatgtatacacatctgaacttaggaccc-tgtcccaagcatactaagcatttaatgaatgtGAGCTTGATATCAATAGCAGTATCATtaatactaatcactaata--a--gtcattaatagtaatactaTAT
s panTro5.chr6              29329558 190 + 175400573 tgctacat----taaaaaacaatctctgaattga---------------------------------------taaaaagagag-----------------------------------tattgtgaagctcaagtgagacaatgtatacacatctgaacttaggaccc-tgtcccaagcatactaagcatttaatggatgtGAGCTTGATATCAATAGCAGTATCATTAATACTAATCACTAATA--A--GTCATTAATAGTAGTACTATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29575306 190 + 173848474 tgctacat----taaaaaacaatctctgaattga---------------------------------------taaaaagagag-----------------------------------tattgtgaagctcaagtgagacaatgtatacacatctgaacttaggaccc-tgtcccaagcatactaagcatttaatggatgtGAGCTTGATATCAATAGCAGTATCATTAATACTAATCACTAATA--A--GTCATTAATAGTAGTACTATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5372916 189 +   6154872 tgctacat----taaaaaacaatctctgaattga---------------------------------------taaaaagagag-----------------------------------tattgtgaagctcaagtgagacaatgtatacacatctgaacttaggaccc-tgtcccaagcatactaagcatttaatgaatgtGAGCTTGATATCAATAGCAGTATCA-TAATACTAATCACTAATA--A--GTCATTAATAGTAGTACTATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74383169 187 + 122973662 tgctgttt----tTAAAA------TCTGTTTTAT---------------------------------------AAAAAAGGgaa----------------------------------ttattgtgagacttcaatgatccaatgcatacacatctagattttggacag-tgcctgaaacataggaaggatctaatgaatgtaagccagttatcattAATAGTatgattagcattaatcattagtaata--atcattactcataatattGAGT
i nomLeu3.chr1a            I 5146 C 0
s rheMac8.chr4              29534206 190 + 172585720 tgctactt----taaaaaacaatctctgaattga---------------------------------------taaaaagagag-----------------------------------tattatgaagctcaagtgagacaatgtatacacatctgaactcaggaccc-tgccccaaacatactaagcatttaatgaatgtGAGCTTGAtatcaatagtagtatcattaatattagtcactaatt--a--gtcattaatagtaatactgtat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29195316 190 - 170955103 tgctactt----taaaaaacaatctctgaattga---------------------------------------taaaaagagag-----------------------------------tattatgaagctcaagtgagacaatgtatacacatctgaactcaggaccc-tgccccaaacatactaagcatttaatgaatgtGAGCTTGATATCAATAGTAGTATCATTAATATTAGTCACTAATT--A--GTCATTAATAGTAATACTGTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2202853 190 -   2996164 tgctactt----taaaaaacaatctctgaattga---------------------------------------taaaaagagag-----------------------------------tattatgaagctcaagtgagacaatgtatacacatctgaactcaggaccc-tgccccaaacatactaagcatttaatgaatgtGAGCTTGATATCAATAGTAGTATCATTAATATTAGTCACTAATA--A--GTCATTAATAGTAATACTGTAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2068585 190 -   2157725 tgctactt----taaaaaacgatctctgaattga---------------------------------------taaaaagagag-----------------------------------tattatgaagctcaagtgagacaatgtatacacatctgaactcaggaccc-tgccccaaacatactaagcatttaatgaatgtGAGCTTGATATCAATAGTAGTATCATTAATATTAGTCACTAATA--A--GTCATTAATAGTAATACTGTAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28498568 190 -  71996105 TGCTACTT----TAAAAAACAATCTCTGAATTGA---------------------------------------CAAAAAGAGAG-----------------------------------TATTATGAAGCTCAAGTGAGACAATGTATACACATCTGAACTCAGGACCC-TGCCCCAAACATACTAAGCATTTAATGAATGTGAGCttgatattaatagtagtatcattaatattagtcactaata--a--gtcattaatagtaataCTGTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2211786 190 +   2316924 tgctactt----taaaaaacaatctctgaattga---------------------------------------taaaaagagag-----------------------------------tattatgaagctcaagtgagacaatgtatacacatctgaactcaggaccc-tgccccaaacatactaagcatttaatgaatgtGAGCTTGATATCAATAGTAGTATCATTAATATTAGTCACTAATA--A--GTCATTAATAGTAATACTGTAT
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1678287 198 -   2232465 tgctgcattctatcataaaaaatctctgaaatga---------------------------------------taaaaagagag----------------------------------ttatcatgatgcttaaatgagacaatgcatacacatctggacttagaatagatgtctgaaatatactcagcatttaataaatgtGAACTCATTGTAAGTAACAGTATAATTAGTATTAATCATTAGTT--ATTGTTATTAGTAGTAAAACTGTAT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            352931 227 -    859332 TGTCATTT----TTTT--TTCATCTCTGAATTGAGACTAATAAAATGTTTATGAAGGTAGGTTAGCAGGTAAGAAAAAGGAGAGGGATTGAAATGTATCTAAGGCTAGCATTGGACAGTTACTGCCAAGCGCACATGAGTCACTGCACTCACCTCTGAActcaggacag-tgcctgaaccataaaaagtgtttaatgaatgtgaccaggttatcattA-----AACAATAATACT-----CCAG-----------------------------
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I

a score=738366.000000
s hg38.chr6_GL000254v2_alt    355107 136 +   4827813 CATTATCTCAGCTTGTCTTGTATATGAGAAAACAG----AA----AATTTACTATTGGTGGTTCAAGTGATTGTTATAATTTCATAATATTATAACATGAAATTATTGAATTTCATATTATCACTTTGTCTTTGTTTCTAGCAT
s panTro5.chr6              29329748 136 + 175400573 CATTATCTCAGCTTGTCTTGTATACGAGAAAACAG----AA----AATTTACTATTGGTGGTTCAAGTGATTGTTATAATTTCATAATATTATAACATGAAATTATTGAATTTCATATTATCACTTTGTCTTTGTTTCTAGCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29575496 136 + 173848474 CATTATCTCAGCTTGTCTTGTATACGAGAAAACAG----AA----AATTTACTATTGGTGGTTCAAGTGATTGTTATAATTTCATAATATTATAACATGAAATTATTGAATTTCATATTATCACTTTGTCTTTGTTTCTAGCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5373105 136 +   6154872 CATTATCTCAGCTTGTCTTGTATACGAGAAAACAG----AA----AATTTACTATTGGTGGTTCAAGTGATTGTTATAATTTCATAATATTATAACATGAAATTATTGAATTTCATATTATCACTTTGTCTTTGTTTCTAGCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74383356 133 + 122973662 TACTATTTCAGCTTGTCATGTGTATGAAAAAGCAG----AGATATAATTTATTATTGGTAATCCCAGTGCTTATTGTAATTTTATAATATT-----ATGAAATGATTAAATGT-ATA-TGTCACTTCTTCTTTGCTTCCAGCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29534396 130 + 172585720 cattatcTCAGCTTGTCTTGTACATGAGAAAACAA----GT----AACTTACTATTGGTGGTTCAAGTGATTGTTATAATTTCATAATATTATAATATCAAATGATTGAATC------TATAACTTTTTCTTTGTTTCTAGCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29195506 134 - 170955103 CATTATCTCAGCTTGTCTTGTACATGAGAAAACAA----GT----AACTTACTATTGGTGGTTCAAGTGATTGTTATAATTTCATAATATTATAATATCAAATGATTGAATCT-ATA-TATAACTTTTTCTTTGTTTCTAGCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2203043 134 -   2996164 CATTATCTCAGCTTGTCTTGTACATGAGAAAACAA----GT----AACTTACTATTGGTGGTTCAAGTGATTGTTATAATTTCATAATATTATAATATCAAATGATTGAATCT-ATA-TATAACTTTTTCTTTGTTTCTAGCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2068775 134 -   2157725 CATTATCTCAGCTTGTCTTGTACATGAGAAAACAA----GT----AACTTACTATTGGTGGTTCAAGTGATTGTTATAATTTCATAATATTATAATATCAAATGATTGAATCT-ATA-TATCACTTTTTCTTTGTTTCTAGCAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28498758 131 -  71996105 C---ATCTCAGCTTGTCTTGTACATGAGAAAACAA----GT----AACTTACTATTGGTGGTTCAAGTGATTGTTATAATTTCATAATATTATAATATCAAATGATTGAATGT-ATA-TATCACTTTTTCTTTGTTTCTAGCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2211976 134 +   2316924 CATTATCTCAGCTTGTCTTGTACATGAGAAAACAA----GT----AACTTACTATTGGTGGTTCAAGTGATTGTTATAATTTCATAATATTATAATATCAAATGATTGAATCT-ATA-TATCACTTTTTCTTTGTTTCTAGCAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2209385 138 -   3067355 cattaTTTCAGCTTGTCATATATATGAGAAAGCAGAGATAT----AATTTATTATTGGTGGTCTCAGTGTTTATTGTAATTTTATAATATTATGACATGAAATGATTAAATGT-ATA-TGTCACTTTTTCTTTGTTTCTAGCAT
i colAng1.NW_012115566v1   N 0 I 377
s otoGar3.GL873742           1678485 120 -   2232465 ---CACCTCAGCTTGTGTAGTATATGAGAAAACAG----AC----AATTTACTTTTGGTGGGCCAAGTGattattataatttt---atattataatatGAAATGC---------ATA-TGGCACCTTTTCTTTGCTACTGGCAT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            353158 128 -    859332 --CAAGCCCAGCTTG-CATGCAGGTGAGGAAACAA----AC---CAGCTCACTTTTGGTGGGCACAGAACTTATTACAAGCCCTGGAAAGAAAAACATGAAAGAATAAAATGC-ATA-T----CCACTTCTTTGTTGCTAGCAT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I

a score=1838595.000000
s hg38.chr6_GL000254v2_alt    355243 367 +   4827813 AATATACTGAGTACATAGTTTTCCAGTAAATGGAAGTTAAATCAATG---TAGTAGGTGATATCTGGTTATCTAAAGGGCATGGAATAAAAGAGGACCCTATTCAGTAGCTGTTATTTTCTACTCCTA-TTTTTTCACGTCCT---C---TTCTCTTCACATTTTATATGGCACTGAT---A--ATTTCTCTTATTTTCTTCATATTTTATATGGCGCCAAT---TTCTCTTTTACGTTATCAGAAAA-TGAACTTACCTCTTGACAAGAACATGTTGATTC------CACTGTCACGTTGACTTTTTGTCCTATTTCTATTTTCTACATGAATC-AAAAGAAATCTTAAATCCCACTGAC-------------------------------CGTTTTTATGTACGGAGATATAATGAGCAAA---C
s panTro5.chr6              29329884 367 + 175400573 AATATACTGAGTACATAGTTTTCCAGTAAATGGAAGTTAAATCAATG---TAGTAGGTGATATCTGGTTATCTAAAGGGCATGGAATAAAAGAGGACCCTATTCAGTAGCTGTTATTTTCTACTCCTA-TTTTTTCACAACCT---C---TTCTCTTCACATTTTATATGGCACTGAT---A--ATTTCTCTTATTTTCTTCATATTTTATATGGCACCAAT---TTCTCTTTTACATTATCAGAAAA-TGAACTTACCTCTTGACAAGAACATGTTGATTC------CACTGTCACGTTGACTTTTTGTCCTATTTCTATTTTCTACATGAATC-AAAAGAAATCTTAAATCCCACTGAC-------------------------------CGTTTTTATGTACGGAGATATAATGAGCAAA---C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29575632 367 + 173848474 AATATACTGAGTACATAGTTTTCCAGTAAATGGAAGTTAAATCAATG---TAGTAGGTGATATCTGGTTATCTAAAGGGCATGGAATAAAAGAGGACCCTATTCAGTAGCTGTTATTTTCTACTCCTA-TTTTTTCACATCCT---C---TTCTCTTCACATTTTATATGGCACTGAT---A--ATTTCTCTTATTTTCTTCATATTTTATATGGCACCAAT---TTCTCTTTTACATTATCAGAAAA-TGAACTTACCTCTTGACAAGAACATGTTGATTC------CACTGTCACGTTGACTTTTTGTCCTATTTCTATTTTCTACATGAATC-AAAAGAAATCTTAAATCCCACTGAC-------------------------------CGTTTTTATGTACGGAGATATAATGAGCAAA---C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5373241 367 +   6154872 AATATACTGAGTACATAGTTTTCCAGTAAATGGAAGTTAAATCAATG---TAGTAGGTGATATCTGGTTATCTAAAGGGCATGGAATAAAAGAGGACCCTATTCAGTAGCTGTTATTTTCTACTCCTA-TTTTTTCACATCCT---C---TTCTCTTCACATTTTATATGGCACTGAT---A--ATTTCTCTTATTTTCTTCATATTTTATATGGCACCAAT---TTCTCTTTTACATTATCAGAAAA-TGAACTTACCTCTTGACAAGAACATGTTGATTC------CACTGTCACGTTGACTTTTTGTCCTATTTCTATTTTCTACATGAATC-AAAAGAAATCTTAAATCCCACTGAC-------------------------------CGTTTTTATGTACAGAGATATAATGAGCAAA---C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74383489 379 + 122973662 AGTGCA--GAGAACATAGTTTCCTCATAAGTGAAAGTCAAGTCAA-----TAGTAGGAGATATTTGGTTATCTGAAGGGCATAGGTGATAACAGTAATCGCCTCAGCAGCTGTTCCTTCTTATTCTAT-TATTTTCACAGCCTCTAC---TCCTCTTCACCTTTTATATGGCACTAGT---GCCAGTTCATTTAT-----------------------CAATTCATTTTTTTTTGCATTATCAGTAAA-TAAACTTATCCCTTAACAAGAGAATGGTGATTC------CACTGTTATCTTAAACCTTT-TCTTATTTATGCATCCTGCATGTATC-AAAAGAAACCTCAAATACCACTGATTCTTTTTCTAATT-AAAAAATTCCCACTGA-CTTTTTTATGTGTGGAGATATAATAAGCAAATTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29534526 366 + 172585720 GATATACTGAGTACACAGTTTTCCAGTAAATGGAAGTTAAATCAATA---TTGTAGGTGATATCTGGTTATCTAAAGGGCATGGAATAGAAGAGGACCCTGTTCAGTAGCTGTTATTTTCTACTCCTA-TTTTTTCACATCCT---C---TTCTCTTCACATTTTATATGGCACTGTT---A--ATTTCTCTTATTTTCTTCATATTTTATATGGCACCAAT---TTCTCTTTTACATTATCAGAAAT-TGAACTTACCCCTTGACAAGAACATGTTGATTC------CACTGTCATGTTAACTTTTT-TCCTATTTTTATTTTCTACACGATTC-AAAAGAAATCTTAAATCCCACTGAC-------------------------------TCTTTTTATGTACGGAGATATAATGAGCAAA---C
i rheMac8.chr4             C 0 I 3
s macFas5.chr4              29195640 366 - 170955103 GATATACTGAGTACATAGTTTTCCAGTAAATGGAAGTTAAATCAATA---TTGTAGGTGATATCTGGTTATCTAAAGGGCATGGAATAGAAGAGGACCCTGTTCAGTAGCTGTTATTTTCTACTCCTA-TTTTTTCACATCCT---C---TTCTCTTCACATTTTATATGGCACTGTT---A--ATTTCTCTTATTTTCTTCATATTTTATATGGCACCAAT---TTCTCTTTTACATTATCAGAAAT-TGAACTTACCCCTTGACAAGAACATGTTGATTC------CACTGTCATGTTAACTTTTT-TCCTATTTTTATTTTCTACACGATTC-AAAAGAAATCTTAAATCCCACTGAC-------------------------------TCTTTTTATGTACGGAGATATAATGAGCAAA---C
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1     2203177 366 -   2996164 GATATACTGAGTACATAGTTTTCCAGTAAATGGAAGTTAAATCAATA---TTGTAGGTGATATCTGGTTATCTAAAGGGCATGGAATAAAAGAGGACCCTGTTCAGTAGCTGTTATTTTCTACTCCTA-TTTTTTCACATCCT---C---TTCTCTTCACATTTTATATGGCACTGTT---A--ATTTCTCTTATTTTCTTCATATTTTATATGGCACCAAT---TTCTCTTTTACATTATCAGAAAT-TGAACTTACCCCTTGACAAGAACATGTTGATTC------CACTGTCATGTTAACTTTTT-TCCTATTTTTATTTTCTACACGATTC-AAAAGAAATCTTAAATCCCACTGAC-------------------------------TCTTTTTATGTACGGAGATATAATGAGCAAA---C
i macNem1.NW_012011356v1   C 0 I 3
s cerAty1.NW_012001495v1     2068909 366 -   2157725 GATATACTGAGAACATAGTTTTCCAGTAAATGGAAGTTAAATCAATA---TTGTAGGTGATATCTGGTTATCTAAAGGGCATGGAATAAAAGAGGACCCTGTTCAGTAGCTGTTATTTTCTACTCCTA-CTTTTTCACATCCT---C---TTCTCTTCACATTTTATATGGCACTGTT---A--ATTTCTCTTATTTTCTTCACATTTTATATGGCACCAAT---TTCTCTTTTACATTATCAGAAAT-TGAACTTACCCCTTGACAAGAACATGTTGATTC------CACTGTCATGTTAACTTTTT-TCCTATTTTTATTTTCTACACGATTC-AAAAGAAATCTTAAATCCCACTGAC-------------------------------TCTTTTTATGTACGGAGATATAATGAGCAAA---C
i cerAty1.NW_012001495v1   C 0 I 3
s chlSab2.chr17             28498889 366 -  71996105 GATATACTGAGTTCACAGTTTTCCAGTAAATGGAAGTTAAATCAATA---TTGTAGGTGATATCTGGTTATCTAAAGGGCATGGAATAAAAGAGGACCCTGTTCAGTAGCTGTTATTTTCCACTCCTA-TGTTTTCACATCCT---C---TTCTCTTCACATTTTATATGGCACTGTT---A--ATTTCTCTTATTTTCTTCATATTTTATATGGCACCAAT---TTCTCTTTTACTTTATCAGAAAA-TGAACTTATCCCTTGACAAGAACATGTTGATTC------CACTGTCATGTTAACTTTTT-TCCTATTTTTATTTTCTACAAGATCG-AAAAGAAATCTTAAATCCCACTGAC-------------------------------TCTTTTTATGTACGGAGACATAAAGAGCAAA---C
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012104165v1     2212110 366 +   2316924 GATATACTGAGAACATAGTTTTCCAGTAAATGGAAGTTAAATCAATA---TTGTAGGTGATATCTGGTTATCTAAAGGGCATGGAATAAAAGAGGACCCTGTTCAGTAGCTGTTATTTTCTACTCCTA-TTTTTTCACATCCT---C---TTCTCTTCACATTTTATATGGCACTGTT---A--ATTTCTCTTATTTTCTTCATATTTTATATGGCACCAAT---TTCTCTTTTACATTATCAGAAAT-TGAACTTACCCCTTGACAAGAACATGTTGATTC------CACTGTCATGTTAACTTTTT-TCCTATTTTTATTTTCTACACGATTC-AAAAGAAATCTTAAATCCCACTGAC-------------------------------TCTTTTTATGTACGGAGATATAATGAGCAAA---C
i manLeu1.NW_012104165v1   C 0 I 3
s otoGar3.GL873742           1678605 353 -   2232465 --AATGCTGAGAACATAGTTTTCTAGTAAATGTAAGTCAAGTCAATAGCTAAGAAGGAACTATTTGGTTATCCGTAGGGGATGGGAGATAAGGGGACT-TATTCAACAGCTATT-TTTTCTGCTCCTATTTTTTTCACATCCT---CTATTTTTCTCCACATTTTATATGGCACTGGTTCCA--GCTTATCT------------------------ACTAAT---TCTCCTTATACATTATCAGAAAA-TGAGCTGTCCCCTTGGCAAGAATGTGTTGATTCCAAAAACACTATCACATTAGCTTT---TCATATTTATATTTCCTACATGGATCTTAAAAAAACCTTAAATCCCACTGAT-------------------------------TCTTTTTAAATATGGCGATATAATAGGCACA---C
i otoGar3.GL873742         C 0 I 3
s dasNov3.JH570037            353286 366 -    859332 ---AATTTGGGAATATAGTTTTCTGGTAAATAGAAGTCAGGTCAATGG--TCATTGGCAGTGT---GCTATTTAAGGGGTGTGGGACATTAGAGGATTGCATTCAGC------TATCTT-TCCTTCTG-TATTTCCATATCCACCAC---TCTTCCTCACAGCTGGTATGGCACTGAT---A--CCAGCTCATC---------------------CACCAAA---CCCTCTCTTACATGAGCAGAAATGTGAACTTACCCATAACAACGAGCATGTTCATTC------CACTGTTATCCCAGTCCT---CCCTCTTTATATATCCTACACAAACT-AAAAGAAACCTTAAATCCCACTAATTCTTCTTCCTCTTAAAAAAAATTCCATGGACAGATTTTAAGTGTGGAGGTTGAATGGACAAA---T
i dasNov3.JH570037         C 0 I 3
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I
e colAng1.NW_012115566v1     2209523 377 -   3067355 I

a score=1742979.000000
s hg38.chr6_GL000254v2_alt    355610 275 +   4827813 CATTCAAAAGGGTGAAAGGATACGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTGAAAATACTTCATATTAATTTCAAAGTTCCCAGGAAACAAATTGGGCATTCTGATTATTTAACATGATGCAACTCAGAGGCAGGGATGTAGGTGAGATGTTCTTGAGAGATCCTTCCCACTCATGGTAATATAATACACTGTATTAGACGCCACTCACCTTTTTTCTAAATGTCCAAGAGATATTCACGCCT---TTCTTTGTGCTGTGTTTCAAAGGAAGTCTGGTTCAAAGAC
s panTro5.chr6              29330251 275 + 175400573 CATTCAAAAGAGTGAAAGGATACGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTGAAAATACTTCATATTGATTTCAAAGTTCCCAGGAAACAAATTGGGCATTCTGATTATTTAACATGATGCAACTCAGAGGCAGGGATGTAGGTGAGATGTTCTTGAGAGATCCTTCCCACTCATGGTAATATAATACACTGTATTAGACGCCACTCACCTTTTTTCTAAATGTCCAAGAGATATTCACGCCT---TTCTTTGTGCTGTGTTTCAAGGGAAGTCTGGTTCAAAGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29575999 275 + 173848474 CATTCGAAAGAGTGAAAGGATACGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTGAAAATACTTCATATTGATTTCAAAGTTCCCAGGAAACAAATTGGGCATTCTGATTATTTAACATGATGCAACTCAGAGGCAGGGATGTAGGTGAGATGTTCTTGAGAGATCCTTCCCACTCATGGTAATATAATACACTGTATTAGACGCCACTCACCTTTTTTCTAAATGTCCAAGAGATATTCACGCCT---TTCTTTGTGCTGTGTTTCAAGGGAAGTCTGGTTCAAAGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5373608 273 +   6154872 CATTCAAAAGGGTGAAAGGATACGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTGAAAATACTTCATATTGATTTCAAAGTTCCCAGGAAACAAATTGGGCATTCTGATTATTTAACATGATGCAACTCAGAGG-AGGGATGTAGGTGAGATGTTCTTGAGAGATCCTTCCCACTCATGGTAATATAATACACTCTATTAGATGCCACTCACCTTTTTTCTAAATGTCCAAGAGATATTCACGCCT---TTTTTTGTGCTGTGTTTCAA-GGAAGTCTGGTTCAAAGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74383868 272 + 122973662 CATTCAAAAGTTTCGAAGGATAAGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTAAAAATACTTGATATTTATTTCAAGGTTCCCTGGAAACAATTTGGACAT--TGATTATTTAACATGATGCAACCCAGAGGTAATGATGTAGGTTAGATGATCTTGAAAGACCCTTCCCAATCATGGTAACATAATTCTCTGTGGTAGACACTACTCGCCTTTATTCTAAGTGTCCTAGAGATATCCATGCCT---TTCTTTGTGTTGTGTTTTAA-GGAAGTCTGGTGCAAAGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29534895 275 + 172585720 CATTCAAAAGGCTGAAAGGATACGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTGAAAATACTTGATATTGATTTCAAGGTTCTCAGGAAACAAATTGGGCATTCTGATTATTTAACATGATGTCACTCAGAGGCAGGGATGTAGGTGAGATGTTCTTGAGAGATCCTTCCCACTCATGGTAATATAATTCACCGTAGTAGACGCCACTCACCTTTTTTCTAAATGTCCAAGAGATATTCACGCCT---TTCTTTGTGTTGTGTTTCAAAGGAAGTCTGGTTCAAAGAC
i rheMac8.chr4             I 3 C 0
s macFas5.chr4              29196009 275 - 170955103 CATTCAAAAGGCTGAAAGGATACGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTGAAAATACTTGATATTGATTTCAAGGTTCTCAGGAAACAAATTGGGCATTCTGATTATTTAACATGATGTCACTCAGAGGCAGGGATGTAGGTGAGATGTTCTTGAGAGATCCTTCCCACTCATGGTAATATAATTCACCGTAGTAGACGCCACTCACCTTTTTTTTAAATGTCCAAGAGATATTCACGCCT---TTCTTTGTGTTGTGTTTCAAAGGAAGTCTGGTTCAAAGAC
i macFas5.chr4             I 3 C 0
s macNem1.NW_012011356v1     2203546 275 -   2996164 CATTCAAAAGGCTGAAAGGATACGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTGAAAATACTTGATATTGATTTCAAGGTTCTCAGGAAACAAATTGGGCATTCTGATTATTTAACATGATGTCACTCAGAGGCCGGGATGTAGGTGAGATGTTCTTGAGAGATCCTTCCCACTCATGGTAATATAATTCACTGTAGTAGACGCCACTCACCTTTTTTCTAAATGTCCAAGAGATATTCACGCCT---TTCTTTGTGTTGTGTTTCAAAGGAAGTCTGGTTCAAAGAC
i macNem1.NW_012011356v1   I 3 C 0
s cerAty1.NW_012001495v1     2069278 275 -   2157725 CATTCAAAAGGCTGAAAGGATACGAAGG-------------------------------------------------------------------------------------------------ATTTTTAGAATCACTGAAAATACTTGATATTGATTTCAAGGTTCTCAGGAAACAAATTGGGCATTCTGATTATTTAACATGATGTCACTCAGAGGCAGGGATGTAGGTGAGATGTTCTTGAGAGATCCTTCCCACTCATGGTAATATAATTCACCGTAGTAGACGCCACTCACCTTTTTTCTAAATGTCCAAGAGATATTCACGCCT---TTCTTTGTGTTGTGTTTCAAAGGAAGTCTGGTTCAAAGAC
i cerAty1.NW_012001495v1   I 3 C 0
s chlSab2.chr17             28499258 275 -  71996105 CATTCAAAAGGCTGAAAGGATACGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTGAAAATACTTGATATTGATTTCCAGGTTCTCAGGAAACAAATTGGGCATTCTGATTATTTAACATGATGTCACTCAGAGGCAGGGATGTAGGTGAGATGTTCTTGAGAGATCCTTCCCATTCATGGTAATATAATTCACCGTAGTAGATGCCACTCACCTTTTTTCTAAATGTCCAAGAGATATTCACGCCT---TTCTTTGTGTTGTGTTTCAAAGGAAGTCTGGTTCAAAGAC
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012104165v1     2212479 275 +   2316924 CATTCAAAAGGCTGAAAGGATACGAAGG-------------------------------------------------------------------------------------------------ATTTTTAGAATCACTGAAAATACTTGATATTGATTTCAAGGTTCTCAGGAAACAAATTGGGCATTCTGATTATTTAACATGATGTCACTCAGAGTCAGGGATGTAGGTGAGATGTTCTTGAGAGATTCTTCCCACTCATGGTAATATAATTCACCGTAGTAGACGCCACTCACCTTTTTTCTAAATGTCCAAGAGATATTCACGCCT---TTCTTTGTGTTGTGTTTCAAAGGAAGTCTGGTTCAAAGAC
i manLeu1.NW_012104165v1   I 3 C 0
s colAng1.NW_012115566v1     2209900 274 -   3067355 CATTCAAAAGTTTCAAAGGATAAGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAGTCACTAAAAATACTTGATATGTATTTCAAGGTTCCCTGGAAACAAATTGGACATTCTGATTATTTAACATGATGCAACCCAGAGGTAATGATGTATGTAAGATGATCTTGAGAGACCCTTCCCAACCATGGTAACGTAATTCTCTGTGGTAGACACCACTTGCCTTTATTCTAAGTGTCCAAGAGATATCCATGCCT---TTCTTTGTGTTGTGTTTC-AAGGAAGTCTGGTGCAAAGAC
i colAng1.NW_012115566v1   I 377 I 158
s otoGar3.GL873742           1678961 267 -   2232465 CATTCAAGGGAGTGAAAAGATAAGTAGG-------------------------------------------------------------------------------------------------ATTGTTAGAGTCACTGAAAATACTTGACATTTATTTCAAGGATCCCAGGAAATAAACTGGGCACTGTGGTTATTTAATGTGATGCAACCCAGAGACAGG-----------GATGGTCTTTAGAGACCATTCCCAGTCATGGGAACCTAACTGTCTATAACAGACACCACTCACCTTTTCTCTAAGTGTCTAAGAAATATCCATGCATTTGTTCTTTGTGCTGTGTTTCAAAGGAAGTCTGATCCAAAGAC
i otoGar3.GL873742         I 3 C 0
s dasNov3.JH570037            353655 332 -    859332 TATTCAAAGGG-TGAGAGGATAAAAAAGTATTTGGATTgggaacagatgtagctcagtatgttgaggccctgcttcccatgtatgaggtcctgggctcaatccccagtaactcttaaaaaaaaGTATCTGTGGAATCACTTAAAATCCTTGAGATTTATGACAAGGTTTCCAGGAACC------------TTGATTATTTCACGTGATATAAAC--AGGGCAGGTATGTGGTTCAGATGTTCCTGAATGACGTTGACCCATCA-GGTGACACAATCCTCCACAGTGGACACCACTAACCTCCTTTCTAAGAGTCACAGCGATATCCATGCCT---TTCT------------------------GGGGCCAAAGAC
i dasNov3.JH570037         I 3 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I

a score=842230.000000
s hg38.chr6_GL000254v2_alt    355885 164 +   4827813 AGATTAATAAATGCAGTTGAGTTTTTGAATTTTCAATCCTTACGACATTCTAACTCAACTACCTTTTG-CCCACTGACCAAGAATGAAATTAGCATGAAACCTGGACTGCATCAAGAAC-----ATGTGAGAAAAATACTTATGAGGAGAGGAAAAT-GTG-TATAGTTAGT
s panTro5.chr6              29330526 164 + 175400573 AGATTAATAAATGCAGTTGAGTTTTTGAATTTTCAATCCTTACGACATTCTAACTCAACTACCTTTTG-CCCACTGACCAAGAATGAAATTAGCATGAAACCTGGACTGCATCAAGAAC-----ATGTGAGAAAAATACTTATGAGGAGAGGAAAAT-GTG-TATAGATAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29576274 164 + 173848474 AGATTAATAAATGCAGTTGAGTTTTTGAATTTTCAATCCTTACGACATTCTAACTCAACTACCTTTTG-CCCACTGACCAAGAATGAAATTAGCATGAAACCTGGACTGCATCAAGAAC-----ATGTGAGAAAAATACTTATGAGGAGAGGAAAAT-GTG-TATAGATAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5373881 165 +   6154872 AGATTAATAAATGCAGTTGAGTTTTTGAATTTTCAATCCTTACGACATTCTAACTCAACTACCTTTTG-CCCACTGACCAAGAATGAAATTAGCATGAAACCTGGACTGCATCAAGAAC-----ATGTGAGAAAAATACTTATGAGGAGAGGAAAATGGTG-TATGGATAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74384140 160 + 122973662 ----TCATACATGCAA-TGATGTTTTGAGCTTTCAACTCTTTTGCCATTCTGACTCAACTACCTTTTG-CCCACAGATTGAGAACAAAATTATCATGTATCTTGCACTGCCTTAAGAAC-----ATATAAATAAAAATCTTAAGATGAGGTAAAAGT-GTGTTACAGATAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29535170 165 + 172585720 AGATTAATAAATGCAGCTGACTTTTTGAATTTTCAATCCTTGTGACATTCTAAATCAACTACCTTTTG-CCCACTGACCAAGAATTAGGTTAGCATGAAACCTGGACAGCAACAAGAAC-----ATGTGAGAAAAATACTTATGAGGAGGGGGAAAT-GTATTATAGATAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29196284 165 - 170955103 AGATTAATAAATGCAGCTGACTTTTTGAATTTTCAATCCTTGTGACATTCTAAATCAACTACCTTTTG-CCCACTGACCAAGAATTAGGTTAGCATGAAACCTGGACAGCAACAAGAAC-----ATGTGAGAAAAATACTTATGAGGAGGGGGAAAT-GTATTATAGATAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2203821 165 -   2996164 AGATTAATAAATGCAGCTGACTTTTTGAATTTTCAATCCTTGTGACATTCTAAATCAACTACCTTTTG-CCCACTGACCAAGAATTAGGTTAGCATGAAACCTGGACAGCAACAAGAAC-----ATGTGAGAAAAATACTTATGAGGAGGGGGAAAT-GTATTATAGATAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2069553 165 -   2157725 AGATTAATAAATGCAGCTGACTTTTTGAATTTTCAATCCTTGTGACATTCTAAATCAACTACCTTTTG-CCCACTGACCAAGAATTAGGTTAGCATGAAACCTGGACAGCAACAAGAAC-----ATGTGAGAAAAATACTTATGAGGAGGGGGAAAT-GTATTATAGATAGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28499533 165 -  71996105 AGATTAATAAATGCAGCTGACTTTTTGAATTTTCAATCCTTCTGACATTCTAACTCAACTACCTTTTG-CCCACTGACCAAGAATTAAGTTAGCATGAAACCTGGACTGCATCAAGAAC-----ATGTGAGAAAAATACTTATGAGGAGGGGAAAAT-GTGTTACAGATAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2212754 165 +   2316924 AGATTAATAAATGCAGCTGACTTTTTGAATTTTCAATCCTTGTGACATTCTAAATCAACTACCTTTTG-CCCACTGACCAAGAATTAGGTTAGCATGAAACCTGGACAGCAACAAGAAC-----ATGTGAGAAAAATACTTATGAGGAGGGGGAAAT-GTATTATAGATAGT
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1679228 133 -   2232465 AGATTGATA------------------ACCTTTCAGCCCTTGTGACATTCTAATTCAACGACCTTTTG-TCCACTGATCAAGAATGAAATTAACATGTAATCTGGACTGCATCAAGAAC-----ATATGAGAAAAATA------ATGAAGGGAAAGT------ATAGAT---
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            353987 170 -    859332 AGGCTGAGCAATGCAA-TGACTTTTTGAGCTTTCAACCCTTGTGACATTCTCAGTTAACTCTCTTTTGTTCCACAAACTAAGAATGGAATTAGCATAAAACCAGGACTGGATCAAAAACATTTAATATGAGAACTGCCTTCATGTGGAGGTGAAAGT-GCTTCCTAGATATT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I
e colAng1.NW_012115566v1     2210174 158 -   3067355 I

a score=14119.000000
s hg38.chr6_GL000254v2_alt    356049 2 +   4827813 GT
s panTro5.chr6              29330690 2 + 175400573 GT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29576438 2 + 173848474 GT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5374046 2 +   6154872 GT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74384300 2 + 122973662 GT
i nomLeu3.chr1a            C 0 I 124
s rheMac8.chr4              29535335 2 + 172585720 GT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29196449 2 - 170955103 GT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2203986 2 -   2996164 GT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2069718 2 -   2157725 GT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28499698 2 -  71996105 GT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2212919 2 +   2316924 GT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2210332 2 -   3067355 AT
i colAng1.NW_012115566v1   I 158 C 0
s otoGar3.GL873742           1679361 1 -   2232465 -T
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            354157 2 -    859332 GT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I

a score=119873.000000
s hg38.chr6_GL000254v2_alt    356051 20 +   4827813 GTCTTCAGTCATTGGGGCAT
s panTro5.chr6              29330692 20 + 175400573 GTCTTCAGTCATTGGGGCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29576440 20 + 173848474 GTCTTCAGTCATTGGGGCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5374048 19 +   6154872 GTCTTCAGTCATTGGGGCA-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29535337 20 + 172585720 GTCTTCAGTCATTGGGGCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29196451 20 - 170955103 GTCTTCAGTCATTGGGGCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2203988 20 -   2996164 GTCTTCAGTCATTGGGGCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2069720 20 -   2157725 GTCTTCAGTCATTGGGGCAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28499700 20 -  71996105 TTCTTCAGTCATTGGGGCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2212921 20 +   2316924 GTCTTCAGTCATTGGGGCAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2210334 20 -   3067355 GTCTTCAGTCACTGGGATAT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1679362 20 -   2232465 ATCTTCAGTCACTGGGGCAC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            354159 18 -    859332 --CTTCAGTCACAGGCACGT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I
e nomLeu3.chr1a             74384302 124 + 122973662 I

a score=1988806.000000
s hg38.chr6_GL000254v2_alt    356071 321 +   4827813 TTTTGACTGACATGGGCTCTCCTCACCAGGTTCCTAGTGGATTTCTACAACGAGAAGTTGACTTTATAGACATCAACAACATTGGAAGTGTCATGGAAAGAAAGTTATGCCTTTAAATAAAGCCAACCAATATTTATTAAGGGAGTACCACTCACACAATTCTGTGTCC-TCT-TTTTAGCCCTAGAGATTCTAGAGTCCCTCAAGTTTAATTGGT--------------------------CATTATGTCCAGAGAGTCAATAA------------------GTCAACTCT-------ATTCCTAACTGGGCTGGTTGCATAATACTACCACATATGTC-----GTTCACAAA------------TTCTAAAA-------------CTAGGGTGAAGATTAGA
s panTro5.chr6              29330712 321 + 175400573 TTTTGACTGACATGGGCTCTCCTCACCAGGTTCCTAGTGGATTTCTACAACGAGAAGTTGACTTTATAGACATCAACAACATTGGAAGTGTCATGGAAAGAAAGTTATGCCTTTAAATAAAGCCAACCAATATTTATTAAGGGAGTACCATTCACACAATTCTGTGTCC-TCT-TTTTAGCCCTAGGGATTCTAGAGTCCCTCAAGTTTAATTGGT--------------------------CATTATGTCCAGAGAGTCAATAA------------------GTCAACTCT-------ATTCCTAACTGGGCTGGTTGCATAATACTACCACATATGTG-----GTTCACAAA------------TTCTAAAA-------------CTAGGGTGAAGATTAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29576460 321 + 173848474 TTTTGACTGACATGGGCTCTCCTCACCAGGTTCCTAGTGGATTTCTACAACGAGAAGTTGACTTTATAGACATCAACAACATTGGAAGTGTCATGGAAAGAAAGTTATGCCTTTAAATAAAGCCAACCAATATTTATTAAGGGAGTACCATTCACACAATTCTGTGTCC-TCT-TTTTAGCCCTAGGGATTCTAGAGTCCCTCAAGTTTAATTGGT--------------------------CATTATGTCCAGAGAGTCAATAA------------------GTCAACTCT-------ATTCCTAACTGGGCTGGTTGCATAATACTACCACATATGTG-----GTTCACAAA------------TTCTAAAA-------------CTAGGGTGAAGATTAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5374067 321 +   6154872 TTTTGACTGACATGGGCTCTCCTCACCAGGTTCCTAGTGGATTTCTACAACGAGAAGTTGACTTTATAGACATCAACAACATTGGAAGTGTCATGGAAAGAAAGTTATGCCTTTAAATAAAGCCAACCAATATTTATTAAGGGAGTACCATTCACACAATTCTGTGTCC-TCT-TTTTAGCCCTAGGGATTCTAGAGTCCCTCAAGTTTAATTGGT--------------------------CATTATGTCCAGAGAGTCAATAA------------------GTCAACTCT-------ATTCCTAACTGGGCTGGTTGCATAATACTACCACATATGTG-----GTTCACAAA------------TTCTAAAA-------------CTAGGGTGAAGATTAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74384426 320 + 122973662 TTTTGACTGACATGGGCTGTCCTTGCCAGGTTCCTAATGGATTTCCACAATGAGAAGCTGATTTTTTAGGCATTAGTAACATTTGCACTGTCACAGAGAGAAGATTGTGACTTT-AATAAAACCAGCCAGTATTTATCAAAGTCCTACTATTCTCACAATGTTGTGTCC-TTTATTTTAACCTTAGGGATTCC-GAGTCCCTCAAGTTTAATTGGT--------------------------CATTGTGTCCCCAGAGGCAATAA------------------GTGAACTCT-------ATTCCCAATTGCACTGGTGGCATAATACTGACACATAGGTA-----GTTCACAAA------------TTCTAAAA-------------CTAGGGTGAAGATTAGA
i nomLeu3.chr1a            I 124 C 0
s rheMac8.chr4              29535357 321 + 172585720 TTTTGACTGACAGGGGTTCTCCTCAGCAGGTTCCTAATGGATTTCTACAATGAGAAGTTGACTTTATAGACATCAACAACATTGGAAGTGTCATGGAAAGAAAGTTATGCCTTTAAGTAAAGCCAACCAATATTTATTAAGGGAGTACCATTCACACAATTCTGTGTCC-TCA-TTTTAGCCCTAGGGATTCTAGAGTCCCTCAAGTTTAATTGGT--------------------------CATTAAGTCCAGAGAGTCAATAA------------------GTCAACACT-------ATTCCTAACTGGACTGGTTACATAATACTACCACATATGTG-----GTTCACAAA------------TTCTGAAA-------------CCAGGGCGAAGATTAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29196471 321 - 170955103 TTTTGACTGACAGGGGTTCTCCTCAGCAGGTTCCTAATGGATTTCTACAATGAGAAGTTGACTTTATAGACATCAACAACATTGGAAGTGTCATGGAAAGAAAGTTATGCCTTTAAGTAAAGCCAACCAATATTTATTAAGGGAGTACCATTCACACAATTCTGTGTCC-TCA-TTTTAGCCCTAGGGATTCTAGAGTCCCTCAAGTTTAATTGGT--------------------------CATTAAGTCCAGAGAGTCAATAA------------------GTCAACACT-------ATTCCTAACTGGACTGGTTACATAATACTACCACATATGTG-----GTTCACAAA------------TTCTGAAA-------------CCAGGGCGAAGATTAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2204008 321 -   2996164 TTTTGACTGACAGGGGTTCTCCTCAGCAGGTTCCTAATGGATTTCTACAATGAGAAGTTGACTTTATAGACATCAACAACATTGGAAATGTCATGGAAAGAAAGTTATGCCTTTAAGTAAAGCCAGCCAATATTTATTAAGGGAGTACCATTCACACAATTCTGTGTCC-TCA-TTTTAGCCCTAGGGATTCTAGAGTCCCTCAAGTTTAATTGGT--------------------------CATTAAGTCCAGAGAGTCAATAA------------------GTCAACACT-------ATTCCTAACTGGACTGGTTACATAATACTACCACATATGTG-----GTTCACAAA------------TTCTGAAA-------------CCAGGGCGAAGATTAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2069740 321 -   2157725 TTTTGACTGACAGGGGTTCTCCTCAGCAGGTTCCTAATGGATTTCTACAATGAGAAGTTGACTTTATAGACATCAACAACATTGGAAGTGTCATGGAAAGAAAGTTATGCCTTTAAGTAAAGCCAACCAATATTTATTAAGGGAGTGCCATTCACACAATTCTGTGTCC-TCA-TTTTAGCCCTAGGGATTCTAGAGTCCCTCAAGTTTAATTGGT--------------------------CATTAAGTCCAGAGAGTCAATAA------------------GTCAACACT-------ATTCCTAACTGGACTGGTTGCATAATACTACCACATATGTG-----GTTCACAAA------------TTCTGAAA-------------CCAGGGCGAAGATTAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28499720 321 -  71996105 TTTTGACTGACAGGGGTTCTCCTCAGCAGGTTCCTAATGGATTTCTACAACGAGAAGTTGACTTTATAGACATCAACAACATTGGAAGTGTCATGGAAAGAAAGTTATGCCTTTAAGTAAAGCCAACCAATATTTATTAAGGGAGTACCATTCACACAATTCTGTGTCC-TCA-TTTTAGCCCTAGGGATTCTAGAGTCCCTCAAGTTTAATTGGT--------------------------CATTACGTCCAGAGAGTCAATAA------------------GTCAACTCT-------ATTCCTAACTGGACTGGTTGCATAATACTACCACATATGTG-----GTTCACAAA------------TTCTAAAA-------------CTAGGGTGAAGATTAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2212941 321 +   2316924 TTTTGACTGACAGGGGTTCTCCTCAGCAGGTTCCTAATGGATTTCTACAATGAGAAGTTGACTTTATAGACATCAACAACATTGGAAGTGTCATGGAAAGAAAGTTATGCCTTTAAGTAAAGCCAACCAATATTTATTAAGGGAGTGCCATTCACACAATTCTGTGTCC-TCA-TTTTAGCCCTAGGGATTCTAGAGTCCCTCAAGTTTAATTGGT--------------------------CATTAAGTCCAGAGAGTCAATAA------------------GTCAACACT-------ATTCCTAACTGGACTGGTTGCATAATACTACCACATATGTG-----GTTCACAAA------------TTCTGAAA-------------CCAGGGCGAAGATTAGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2210354 319 -   3067355 TTTTGACTGACA-CGGCTGTCCTCGCTAGATTCCTAAT-GATTTCCACAATAAGAGGCTGATTTTATAAACATTAGCAACATTTGCACTGTCACAGAGAGAAGGTTGTGACTTTTAATAGaatcagccagtatttattaaaggtctactattctcacaatgctgtgTCCTTTA-TTTTAACCTTAGGGATTCT-GAATCCCTTAAGTTTAATTGGT--------------------------CATTGTGTCCTGAGAGGCAATAA------------------GTGAACTCT-------ATTCCCAATTGCACTGGTGGCATAATACTGACACATAGGTA-----GTTCACAAA------------TTCTAAAA-------------CTAGGGTGAAGATTAGA
i colAng1.NW_012115566v1   C 0 I 664
s otoGar3.GL873742           1679382 316 -   2232465 TTTTGACTGACATGTGCTCTTCTTACCAGGCTCCTAATTGATTTCT--TACAAGAAGTTGACATAATAA--ATCAGCAACATTGGTGGTGTCACAAAGAGAA-GTTGTGCCTTCAACTAAAA-CATACAATATTTATTAGGGGCCTACTATCTGCACAGTTCTGTGTCCTTTA-TTTTAGCCCTAGAGATTTCAGAATCCCCCAAGTTTAATTGGT--------------------------CTTTATGTCCAGAGAGGCATTAA------------------GTTAACTCT-------ATTCCCAGCTGTATTGGTAGCATAATACTGGCATGTAGGTG-----GTTCACAAA------------TTTTAAAC-------------TTAAGGTGAATATTAGA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            354177 376 -    859332 -TTTGACAGGTGTGGGCTTTCCTCACTAGTTTCTTCATGGATTTATGCAAGGAGAAG-TGCTTTTATAAACTCCAGGAAAATGGTA---GTCACAGAGAGAAGGTTGTACCTT-AAATAAAACCAACCAGT--------------TGCCATTCACCAGGCTGTGCATTC-TT--CTTTAGCCCTGGGGACTCCAGAGTTCCTCCAGATTAACTGGTGTTTGTGAGGAATATGAGAAattacacattttgtc---aaaatctatgacattgtgctttgcaaagtgtaaaccgtgatgtaaactatcgaccatgctagcagc--aatgcttcaatatGTGTGTCAGAGATCATGGAGGTGAACTCTTTTCCCAAAACACACATGGGTGGCCAGAGTGTAGATTAGA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I

a score=458240.000000
s hg38.chr6_GL000254v2_alt    356392 89 +   4827813 GTAACAAAA-ATAAACAATGAAAAATAAATTTAAAGTTGTTTAATTAGGAAAGCACAA-GGTTTAATGAACTTATAGCCCCAAATTCCTTT
s panTro5.chr6              29331033 89 + 175400573 GTAACAAAA-ATAAACAATGAAAAATAAATTTAAAGTTGTTTAATTAGGAAAGCACAA-GGTTTAATGAACTTATAGCCCCAAATTCCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29576781 89 + 173848474 GTAACAAAA-ATAAACAATGAAAAATAAATTTAAAGTTGTTTAATTAGGAAAGCACAA-GGTTTAATGAACTTATAACCCCAAATTCCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5374388 89 +   6154872 GTAACAAAA-ATAAACAATGAAAAATAAATTTAAAGTTGTTTAATTAGGAAAGCACAA-GGTTTAATGAACTTATAGCCCCAAATTCCTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74384746 90 + 122973662 GTTATAAAACATGAACTATGAAAAATGGGTTTGGAATGTATTAATTTGAAGAGCACGA-GGCTAAATAAACATACAGCCATGAatttcttt
i nomLeu3.chr1a            C 0 I 560
s rheMac8.chr4              29535678 90 + 172585720 GTAATAAAAAATAAACAATGAAAAATAAATTTAAAGTTGCTTAACTAGGAGAGCACAA-GTTTTAATGAACTTATAACCCCAAATTCCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29196792 90 - 170955103 GTAATAAAAAATAAACAATGAAAAATAAATTTAAAGTTGCTTAACTAGGAGAGCACAA-GTTTTAATGAACTTATAACCCCAAATTCCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2204329 90 -   2996164 GTAATAAAAAATAAACAATGAAAAATAAATTTAAAGTTGCTTAACTAGGAGAGCACAA-GTTTTAATGAACTTATAACCCCAAATTCCTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2070061 90 -   2157725 GTAATAAAAACTAAACAATGAAAAATAAATTTAAAGTTGCTTAACTAGGAGAGCACAA-GGTTTAATGAACTTATAACCCCAAATTCCTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28500041 90 -  71996105 GTAATAAAAAATAAACAATGAAAAATAAATTTAAAGTTGCTTAACTAGGAGAGCACAA-GTTTTAATGAACTTATAACCCCAAATTCCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2213262 90 +   2316924 GTAATAAAAAATGAACAATGAAAAATAAATTTAAAGTTGCTTAACTAGGAGAGCACAA-GTTTTAATGAACTTATAACCCCAAATTCCTTT
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1679698 89 -   2232465 GCCATAAATCATAAATGGTAAAAGATAAGTTCAAAGTTGC-TAATTAGGAGAACACAATGGCTTAATGAACTTATAGCTTCAAATTCCTT-
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            354553 88 -    859332 GTCATGAAACCTGAACCATGAAAAGTAA-TTGGGAATTATTTAAACTGGAGCGCATAG-GG-TAAACAACCTTATTGTCCCAAATTCCttt
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I
e colAng1.NW_012115566v1     2210673 664 -   3067355 I

a score=10670.000000
s hg38.chr6_GL000254v2_alt    356481 2 +   4827813 TA
s panTro5.chr6              29331122 2 + 175400573 TA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29576870 2 + 173848474 TA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5374477 2 +   6154872 TA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29535768 2 + 172585720 TA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29196882 2 - 170955103 TA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2204419 2 -   2996164 TA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2070151 2 -   2157725 TA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28500131 2 -  71996105 TA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2213352 2 +   2316924 TA
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1679787 2 -   2232465 CA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            354641 2 -    859332 ta
i dasNov3.JH570037         C 0 I 220
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I
e colAng1.NW_012115566v1     2210673 664 -   3067355 I
e nomLeu3.chr1a             74384836 560 + 122973662 I

a score=33300.000000
s hg38.chr6_GL000254v2_alt    356483 9 +   4827813 AATAGTTGC
s panTro5.chr6              29331124 9 + 175400573 AATAGTTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29576872 9 + 173848474 AATAGTTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5374479 9 +   6154872 AATAGTTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29535770 9 + 172585720 AATTGTTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29196884 9 - 170955103 AATTGTTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2204421 9 -   2996164 AATTGTTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2070153 9 -   2157725 AATTGTTGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28500133 9 -  71996105 AATAGTTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2213354 9 +   2316924 AATTGTTGC
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1679789 9 -   2232465 AAAAGTCTC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            354643 220 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I
e colAng1.NW_012115566v1     2210673 664 -   3067355 I
e nomLeu3.chr1a             74384836 560 + 122973662 I

a score=6006.000000
s hg38.chr6_GL000254v2_alt    356492 1 +   4827813 A
s panTro5.chr6              29331133 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29576881 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5374488 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74385396 1 + 122973662 A
i nomLeu3.chr1a            I 560 C 0
s rheMac8.chr4              29535779 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29196893 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2204430 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2070162 1 -   2157725 A
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28500142 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2213363 1 +   2316924 A
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1679798 1 -   2232465 A
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            354643 220 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I
e colAng1.NW_012115566v1     2210673 664 -   3067355 I

a score=3465.000000
s hg38.chr6_GL000254v2_alt    356493 1 +   4827813 A
s panTro5.chr6              29331134 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29576882 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5374489 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74385397 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29535780 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29196894 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2204431 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2070163 1 -   2157725 A
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28500143 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2213364 1 +   2316924 A
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1679799 1 -   2232465 G
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            354863 1 -    859332 G
i dasNov3.JH570037         I 220 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I
e colAng1.NW_012115566v1     2210673 664 -   3067355 I

a score=348780.000000
s hg38.chr6_GL000254v2_alt    356494 52 +   4827813 GGTCAAATAGGGAGTCCTATGATGGCGTATAGGGAAAAATGATATTTCTATT
s panTro5.chr6              29331135 52 + 175400573 GGTCAAATAGGGAGTCCTATGATGGCGTATAGGGAAAAATAATATTTCTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29576883 52 + 173848474 GGTCAAATAGGGAGTCCTATGATGGCGTATAGGGAAAAATAATATTTCTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5374490 52 +   6154872 GGTCAAATAGGGAATCCTATGATGGCGTATAGGGAAAAATAATATTTCTATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74385398 52 + 122973662 GGTCAAATAGGGAGTCCTTTGATGGTGTATATAGGGAAATGGTATTTCTATT
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4              29535781 52 + 172585720 AGTCAAATAGAGAGTCCTATGATGGCGTATAGGGAAAAATAATATTTCTAGT
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              29196895 52 - 170955103 AGTCAAATAGAGAGTCCTATGATGGCGTATAGGGAAAAATAATATTTCTAGT
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     2204432 52 -   2996164 AGTCAAATAGAGAGTCCTATGATGGCGTATAGGGAAAAATAATATTTCTAGT
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012001495v1     2070164 52 -   2157725 AGTCAAATAGAGAGTCCTATGATGGCGTATAGGGAAAAATAATATTTCTAGT
i cerAty1.NW_012001495v1   C 0 I 1
s chlSab2.chr17             28500144 52 -  71996105 AGTCAAACAGGGAGTCCTATGATGGTGTATAGGGAAAAATAATATTTCTATT
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012104165v1     2213365 52 +   2316924 AGTCAAATAGAGAGTCCTATGATGGCGTATAGGGAAAAATAATATTTCTAGT
i manLeu1.NW_012104165v1   C 0 I 1
s colAng1.NW_012115566v1     2211337 52 -   3067355 GGTCAAATAGGGAGTGCTTTGATGGCGTATATAGGAAAATGGTATTTCTATT
i colAng1.NW_012115566v1   I 664 N 0
s otoGar3.GL873742           1679800 51 -   2232465 GGTCAAATAGTGAGACCTCTGATGGTATATATGGAAAAACAATATTTCTAA-
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            354864 52 -    859332 GGGCAAATAGTGAGCCCTTTGATGGTGCATATATGAAAATAGTATTTCTGTT
i dasNov3.JH570037         C 0 I 1
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I

a score=991895.000000
s hg38.chr6_GL000254v2_alt    356546 184 +   4827813 TTCACTGATTTTAGT------AATAAGTGTTTGTAAACTAAAGCTACCAGAGATCTGTAGGTTAAAA-ATTA----TGTCATACAAAGTCACTTAACATATTAATATACACATTGAAATTTAAGGTTAGCATTAATTCACTGGGTCAGAACACACAGAAATTACATGAAATTGCAATAGGGGGAATAGTTTTTGA
s panTro5.chr6              29331187 184 + 175400573 TTCACTGATTTTTGT------AATAAGTGTTTGTAAACTAAAGCTACCAGAGATCTGTAGGTTAAAA-ATTA----TGTCATACAAAGTCACTTAACATATTAATATACACATTGAAATTTAAGGTTAGCATTAATTCACTGGGTCAGAACACACAGAAATTACATGAAATTGCAATAGGGGGAATAGTTTTTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29576935 184 + 173848474 TTCACTGATTTTTGT------AATAAGTGTTTGTAAACTAAAGCTACCAGAGATCTGTAGGTTAAAA-ATTA----TGTCATACAAAGTCACTTAACATATTAATATACACATTGAAATTTAAGGTTAGCATTAATTCACTGGGTCAGAACACACAGAAATTACATGAAATTGCAATAGGGGGAATAGTTTTTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5374542 182 +   6154872 TTCACTGATTTTTGT------AAT--GTGTTTGTAAACTAAAGCTACCAGAGATCTGTAGGTTAAAA-ATTA----TGTCATACAAAGTCACTTAACATATTAATATACACATTGAAATTTAAGGTTAGCATTAATTCACTGGGTCAGAACACACAGAAATTACATGAAATTGCAATAGGGGGAATAGTTTTTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74385451 189 + 122973662 TTTACTGATTTTTTTGTGATGAATAAATATGCTTGGACTAAATCTCCCAGAGATCTGCGGTTAAAAT-ATTATTTCTATCATATCATGTCATTTAACATA--AATTAACACACTGAAGTTTAAGGTTAGCAGTAATTCACTGGAGCAGAACAAGTAGAAATAATACGAGATTGCAAC---TGGAATAGTTTTTGA
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4              29535834 183 + 172585720 TTCACTGATTTTTGT------AATGAGTATTTGTAAACTAAACCCACCAGAGATCTGTAGGTTAAAA-ATTA----TGTCATACAAAGTCACTTAACGTATTAATATACACATTGAAATTTAAGGTTAGCATTAATTCACTGGGTCAGAACACATAGAAATTACATGAAATTGCAAT-GGGGGAATTGTTTTTGA
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              29196948 183 - 170955103 TTCACTGATTTTTGT------AATGAGTATTTGTAAACTAAACCCACCAGAGATCTGTAGGTTAAAA-ATTA----TGTCATACAAAGTCACTTAACGTATTAATATACACATTGAAATTTAAGGTTAGCATTAATTCACTGGGTCAGAACACATAGAAATTACATGAAATTGCAAT-GGGGGAATTGTTTTTGA
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     2204485 183 -   2996164 TTCACTGATTTTTGT------AATGAGTATTTGTAAACTAAACCCACCAGAGATCTGTAGGTTAAAA-ATTA----TGTCATACAAAGTCACTTAACGTATTAATATACACATTGAAATTTAAGGTTAGCATTAATTCACTGGGTCAGGACACATAGAAATTACATGAAATTGCAAT-GGGGGAATTGTTTTTGC
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012001495v1     2070217 183 -   2157725 TTCACTGATTTTTGT------AATGAGTATTTGTAAACTAAACCCACCAGAGATCTGTATGTTAAAA-ATTA----TGTCATACAAAGTCACTTAACGTATTAATATACACATTGAAATTTAAGGTTAGCATTAATTCACTGGGTCAGAACACATAGAAATTACATGAAATTGCAAT-GGGGGAATTGTTTTTGA
i cerAty1.NW_012001495v1   I 1 C 0
s chlSab2.chr17             28500197 183 -  71996105 TTCACTGATTTTTGT------AATAAGTGTTTGTAAACTAAACCTACCAGAGATCTGTATGTTAAAA-ATCA----TGTCATACAAAGTCACTTAACGTATTAATATACGCATTGAAATTTAAAGTTAGCATTAATTCACTGGGTCAGAACACGTAGAAATTACATGAAATTGCAAT-GGGGGAATTGTTTTTGA
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012104165v1     2213418 183 +   2316924 TTCACTGATTTTTGT------AATGAGTATTTGTAAACTAAACCCACCAGAGATCTGTATGTTAAAA-ATTA----TGTCATACAAAGTCACTTAACGTATTAATATACACATTGAAATTTAAGGTTAGCATTAATTCACTGGGTCAGAACACATAGAAATTACATGAAATTGCAAT-GGGGGAATTGTTTTTGA
i manLeu1.NW_012104165v1   I 1 C 0
s otoGar3.GL873742           1679851 178 -   2232465 TTCATTAAGTTTTGT------AAT----ATTTGTGGACTAACCCTACCAGGGATCTGCAGGTTAAAATATTG----TGCAATACAAAGTCACTTAACATATGAAAATACACACTGAAATTTAAGGTTAGCCTAAATCCACTCGGGTAGAATAAGTGGAAATGACATGAGATCACAAC---AGGAATAGTTTTTGA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            354917 179 -    859332 TTCACTGGTTTGTG-------AATGAATGTACTTGAACTAAA-CTGCCAGAAACCTGCAGTTTGAAA-ATTA----CATCACGCAAAGTCAGTTGATGTATGAATGAACACACTGAGGTTTCAAGTTAGTAGTAATTCACTGGGGCAGAACTAGAAGAATTGATGAGGAAATCAAAC---AGGAATGGTTTTTGA
i dasNov3.JH570037         I 1 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171574333 949 - 171630274 I

a score=5005.000000
s hg38.chr6_GL000254v2_alt    356730 1 +   4827813 A
s panTro5.chr6              29331371 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29577119 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5374724 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74385640 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29536017 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29197131 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2204668 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2070400 1 -   2157725 A
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2213601 1 +   2316924 A
i manLeu1.NW_012104165v1   C 0 C 0
s dasNov3.JH570037            355096 1 -    859332 A
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680029 0 -   2232465 C
e calJac3.chr4             171574333 949 - 171630274 I
e chlSab2.chr17             28500380 0 -  71996105 C

a score=15606.000000
s hg38.chr6_GL000254v2_alt    356731 4 +   4827813 AGAA
s panTro5.chr6              29331372 4 + 175400573 AGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29577120 4 + 173848474 AGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5374725 4 +   6154872 AGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74385641 4 + 122973662 AAGA
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4              29536018 4 + 172585720 AGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29197132 4 - 170955103 AGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2204669 4 -   2996164 AGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2070401 4 -   2157725 AGAA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28500380 2 -  71996105 --AA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2213602 4 +   2316924 AGAA
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            355097 0 -    859332 C
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680029 0 -   2232465 C
e calJac3.chr4             171574333 949 - 171630274 I

a score=995473.000000
s hg38.chr6_GL000254v2_alt    356735 261 +   4827813 GCAGCTGAGggctggggcggtggctcacgcctgtaatcccagcactttgggaggccgaagcggacggatcacctgaggtcagg---agttcaagaccagcctggccaacatggtga-aacctagtgtctactaaaaatacaaaaaattagctgggcatggtggtgggtgcttgtaatctcagctactcgggaggcagaggcgggacaggagaatcgcttgaacctggg----------------gagacaagataggtcattgccctccagcctgggcaac
s panTro5.chr6              29331376 261 + 175400573 GCAGCTGAGggctggggcggtggctcacgcctgtaatcccagcactttgggaggccgaagcgggcggatcacctgaggtcagg---agttcaagaccagcccggccaacatggtga-aacctagtgtctactaaaaatacaaaaaattagctgggcatggtggtgggcgcttgtaatctcagctactcgggaggcagaggcaggacaggagaatcgcttgaacctggg----------------gagacaagataggccattgccctccagcctgggcaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29577124 261 + 173848474 GCAGCTGAGggctggggcggtggctcacgcctgtaatcccagcactttgggaggccgaagcgggcggatcacctgaggtcagg---agttcaagaccagcctggccaacatggtga-aacctagtgtctactaaaaatacaaaaaattagctgggcatggtggtgggcgcttgtaatctcagctactcgggaggcagaggcaggacaggagaatcgcttgaacctggg----------------gagacaagataggccattgccctccagcctgggcaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5374729 261 +   6154872 GCAGCTGAGggctggggcggtggctcacgcctgtaatcccagcactttgggaggccgaagcgggcggatcacctgaggtcagg---agttcaagaccagcctggccaacatggtga-aacctagtgtctactaaaaatacaaaaaattagctgggcatggtggtgggcgcttgtaatctcagctactcgggaggcagaggcgggacaggagaatcgcttgaacctggg----------------gagacaagataggccattgccctccagcctgggcaac
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29536022 276 + 172585720 GAAGCTGAGggctggggtggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcggatcacctgaggtcagg---agttcaagaccagcctggccaacatggtga-aacccagtctctactaaaaatacaaaaaattagctgggcgtggtggcaggtgcttgtaatcccagctactcgggaggctgaggca-gatgggagaatcgcttgaacctgggaggtgggggttgcagtgagacgagatcagccattgcactccagcctgggcaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29197136 276 - 170955103 GAAGCTGAGggctggggtggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcggatcacctgaggtcagg---agttcaagaccagcctggccaacatggtga-aacccagtctctactaaaaatacaaaaaattagctgggcgtggtggcaggtgcttgtaatcccagctactcgggaggctgaggca-gatgggagaatcgcttgaacctgggaggtgcgggttgcagtgagacgagatcagccattgcactccagcctgggcaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2204673 275 -   2996164 GAAGCTGAGggctggggtggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcggatcacctgaggtcagaggtagttcaagaccagcctggccaacatggtgagaacccagttcctactaaaaatac-aaaaattagctgggcgtgg-agcaggtgcttgtaatcccagctac-cgggaggctgaggca-gatgggagaatcgcttgaacctgggagggg-gggttgcagtgagacgagatcagccattgcactccagcct-ggcaac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2070405 276 -   2157725 GAAGCTGAGggctggggtggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcggatcacctgaggtcagg---agttcaagaccagcctggccaacatggtga-aacccagtctctactaaaaatacaaaaaattagctgggcgtggtggcaggtgcttgtaatcccagctactcaggaggctgaggca-gatgggagaatcgcttgaacctgggaggtgggggttgcagtgagacgagatcagccattgcactccagcctgggcaac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28500382 276 -  71996105 GAAACTGAGggctggggcggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcggatcacctgaggtcagg---agtttaagaccagcctggccaacatggtga-aactcagtctctactaaaaatacaaaaaattagctgggcgtggtggcaggcgcttgtaatcccagctacttgggaggctgaagcg-gatgggagaatcgcttgaacctgggaggtggaggttgcagtgagacgagatcagccattgcactccagcctgggcaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2213606 276 +   2316924 GAAGCTGAGggctggggtggtggctcacacctgtaatcccagcactttgggaggctgaggcaggcggatcacctgaggtcagg---agttcaagaccagcctggccaacatggtga-aacccagtctctactaaaaatacaaaaaattagctgggcgtggtggcaggtgcttgtaatcccagctactcaggaggctgaggca-gatgggagaatcgcttgaacctgggaggtgggggttgcagtgagacgagatcagccattgcactccagcctgggcaac
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            355097   0 -    859332 C
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680029   0 -   2232465 C
e calJac3.chr4             171574333 949 - 171630274 I
e nomLeu3.chr1a             74385645   1 + 122973662 I

a score=85772.000000
s hg38.chr6_GL000254v2_alt    356996 26 +   4827813 aaaagcgaaactccatctccaaa--aaa
s panTro5.chr6              29331637 26 + 175400573 aagagcgaaactccatctccaaa--aaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29577385 26 + 173848474 aagagcgaaactccatctccaaa--aaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5374990 26 +   6154872 aagagtgaaactccatctccaaa--aaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29536298 26 + 172585720 aagagcaaaacttcgtctcaaag--aaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29197412 26 - 170955103 aagagcaaaacttcgtctcaaag--aaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2204948 28 -   2996164 aagagcaaaatatcgtctcaaagaaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2070681 27 -   2157725 aagagcaaaacttcgtctcaaag-aaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28500658 28 -  71996105 aagagcaaaacttcgtctcaaagaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2213882 27 +   2316924 aagagcaaaacttcgtctcaaag-aaaa
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171575282 26 - 171630274 AAAAGCAAAATTCCCACCTCAAA--AAA
i calJac3.chr4             I 949 C 0
e dasNov3.JH570037            355097  0 -    859332 C
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680029  0 -   2232465 C
e nomLeu3.chr1a             74385645  1 + 122973662 I

a score=-2376.000000
s hg38.chr6_GL000254v2_alt    357022 4 +   4827813 a----aaa
s panTro5.chr6              29331663 1 + 175400573 a-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29577411 3 + 173848474 a-----aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5375016 6 +   6154872 a--aaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29536324 8 + 172585720 aaaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29197438 8 - 170955103 aaaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2204976 8 -   2996164 aaaaaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2070708 8 -   2157725 aaaaaaaa
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28500686 8 -  71996105 aaaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2213909 8 +   2316924 aaaaaaaa
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171575308 1 - 171630274 A-------
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1680029 4 -   2232465 ----AAAT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            355097 0 -    859332 C
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74385645 1 + 122973662 I

a score=26959.000000
s hg38.chr6_GL000254v2_alt    357026 5 +   4827813 aaGCT
s panTro5.chr6              29331664 3 + 175400573 --GCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29577414 5 + 173848474 aaGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5375022 5 +   6154872 aaGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29536332 5 + 172585720 aaGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29197446 5 - 170955103 aaGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2204984 5 -   2996164 aaGCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2070716 5 -   2157725 aaGCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28500694 5 -  71996105 aaGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2213917 5 +   2316924 aaGCT
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171575309 5 - 171630274 AAGCT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1680033 5 -   2232465 AAATT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            355097 5 -    859332 AAGTA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74385645 1 + 122973662 I

a score=569478.000000
s hg38.chr6_GL000254v2_alt    357031 104 +   4827813 GATTTATGCAAGTTA-TGACTTAATATGTGACTTAATAAGTGCTTATCCTAAGATCTTAG-TAAAATAAAG-AAGTT-GTAATTGAATTG-------AGCATCAGCCTAGATATA
s panTro5.chr6              29331667 104 + 175400573 GATTTATGCAAGTTA-TGACTTAATATGTGACTTAATAAGTGCTTATCCTAAGATCTTAG-TAAAATAAAG-AAGTT-GTAATTGAATTG-------AGCGTCAGCCTAGATATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29577419 104 + 173848474 GATTTATGCAAGTTA-TGACTTAATATGTGACTTAATAAGTGCTTATCCTAAGATCTTAG-TAAAATAAAG-AAGTT-GTAATTGAATTG-------AGCGTCAGCCTAGATATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5375027 104 +   6154872 GATTTATGCAAGTTA-TGACTTAATATGTGACTTAATAAGTGCTTATCCTAAGATCTTAG-TAAAATAAAG-AAGTT-GTAATTGAATTG-------AGCATCAGCCTAGATATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74385646 100 + 122973662 GATTTATGCAATTTA-------------TAACTTAATAAGTACTCACCAAAGATTTTCAG-TGaaataaagaaaatt-ataattaaattaaatATCTAGTATCAGCCTGGATATA
i nomLeu3.chr1a            I 1 I 2297
s rheMac8.chr4              29536337 105 + 172585720 GATTTGTGCAAGTTATTTACTTAATATGTGACTTAATATGTGCTCATCCTAAGATTTTAG-TAAAATAAAG-AAGGT-GTAATTGAGTTG-------AGCATCAGCCTAGATATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29197451 105 - 170955103 GATTTGTGCAAGTTATTTACTTAATATGTGACTTAATATGTGCTCATCCTAAGATTTTAG-TAAAATAAAG-AAGGT-GTAATTGAGTTG-------AGCATCAGCCTAGATATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2204989 106 -   2996164 GATTT-TGCAAGTTATTTACTTAATATGTGACTTAATATGTGCTCATCCTAAGATTTTAGTTAAAATAAAG-AAGGTGGTAATTGAGTTG-------AGCATCAGCCTAGATATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2070721 105 -   2157725 GATTTGTGCAAGTTATTTACTTAATATGTGACTTAATATGTGCCCATCCTAAGATTTTAG-TAAAATAAAG-AAGGT-GTAATTGAGTTG-------AGCATCAGCCTAGATATA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28500699  93 -  71996105 GATTTGTGCAAGTTATTT------------ACTTAATATGTGCTTATCCTAAGATTTTAG-TAAAAAAAAG-AAGGT-GTAATTGAGTTG-------AGCATCGGCCTAGATATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2213922 105 +   2316924 GATTTGTGCAAGTTATTTACTTAATATGTGACTTAATATGTGCCCATCCTAAGATTTTAG-TAAAATAAAG-AAGGT-GTAATTGAGTTG-------AGCATCAGCCTAGATATA
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171575314  92 - 171630274 GATTTGTGCAAGTTA-------------TTACTTAATATGTACTCATCCTAAGATTTTAG-CAAAATAAAG-ATGCA-GTAATTGAATTG-------AGTGTCAGCCTAGATATA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1680038  91 -   2232465 GACTTGTGCAATTTA-------------TAACTTAATTTGTGCTCA-CCTAAAATTCTAG-TAAAATAAAT-AAATT-GTAATTGAATCG-------AGCATCAGCATAGATACA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            355102  93 -    859332 GATTTTTGCAATTTA-------------TAACTTAATATGTGATCACCTAAGATTTTTAA-TGAAGTAAAG-AACATGGAAATTGTGTTT-------ACCATCAGTCTAGATATA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I

a score=268321.000000
s hg38.chr6_GL000254v2_alt    357135 60 +   4827813 ATCTTAAGGAAACTAATGTGCTCGTA-TTTTAATGTATCTATTTTTCCTCATTTTTCTTTT-------------------------------
s panTro5.chr6              29331771 60 + 175400573 ATCTTAAGGAAACTAATGTGCTCGTA-TTTTAATGTATCTATTTTTCCTCATTTTTCTTTT-------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29577523 60 + 173848474 ATCTTAAGGAAACTAATGTGCTCGTA-TTTTAATGTATCTATTTTTCCTCATTTTTCTTTT-------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5375131 60 +   6154872 ATCTTAAGGAAACTAATGTGCTCGTA-TTTTAATGTATCTATTTTTCCTCATTTTTCTTTT-------------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29536442 60 + 172585720 ATCTTCAGGAAACTCATGTGCTTGTA-TTTTAATGTATTTATTTTCCCTCATTTTTTCTTT-------------------------------
i rheMac8.chr4             C 0 I 40
s macFas5.chr4              29197556 60 - 170955103 ATCTTCAGGAAACTCATGTGCTTGTA-TTTTAATGTATTTATTTTTCCTCATTTTTTCTTT-------------------------------
i macFas5.chr4             C 0 I 40
s macNem1.NW_012011356v1     2205095 59 -   2996164 ATCTTCAGG-AACTCATGTGCTTGTATTTTTAATGTATTTA-TTTTCCTCATTTTTTCTTT-------------------------------
i macNem1.NW_012011356v1   C 0 I 44
s cerAty1.NW_012001495v1     2070826 60 -   2157725 ATCTTCAGGAAACTCATGTGCTTGTA-TTTTAATGTATTTATTTTTCCTCATTTTTTCTTT-------------------------------
i cerAty1.NW_012001495v1   C 0 I 40
s chlSab2.chr17             28500792 60 -  71996105 ATCTTCAGGAAACTCATGTGCTTGTA-TTTTAATGTATTTATTTTTCCTCATTTTTTCTTT-------------------------------
i chlSab2.chr17            C 0 I 40
s manLeu1.NW_012104165v1     2214027 60 +   2316924 ATCTTCAGGAAACTCATGTGCTTGTA-TTTTAATGTATTTATTTTTCCTCATTTTTTCTTT-------------------------------
i manLeu1.NW_012104165v1   C 0 I 40
s calJac3.chr4             171575406 60 - 171630274 ATCTTCAGGAAAATCATGTGCTCATA-TTTTAATGTATTTAGTTTTTCTTATTTTTCTTTT-------------------------------
i calJac3.chr4             C 0 I 36
s otoGar3.GL873742           1680129 45 -   2232465 ATCTCCAAGAAAATCATATG----TA-T-----------TATTTTCTCTTATTTTTCTTTT-------------------------------
i otoGar3.GL873742         C 0 I 82
s dasNov3.JH570037            355195 91 -    859332 AACTCAAAGAAAATACCTGGTTAGTA-TTAACATATATTTTATTTAACAAATTTTCTTTGTATAGTGCATTTTTATAAACTTTAAAATCCTA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74385746 2297 + 122973662 I

a score=682932.000000
s hg38.chr6_GL000254v2_alt    357195 124 +   4827813 TGTGTAGAATATGATCATTTTCTAAATTAGGACATTTTCTTAGCCTGTGATTTTTGTAACTATATGACA---TCTGTTGT--AGC-TAataatt-t------------atatataag-----tttaatagacat-atatacatactttc
s panTro5.chr6              29331831 124 + 175400573 TGTGTAGAATATGATCATTTTCTAAATTAGGACATTTTCTTAGCCTGTGATTTTTGTAACtatatgaca---tctgttat--agc-taataatt-t------------atatataag-----tttaatatacat-atatacatactttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29577583 124 + 173848474 TGTGTAGAATATGATCATTTTCTAAATTAGGACATTTTCTTAGCCTGTGATTTTTGTAACtatatgaca---tctgttat--agc-taataatt-t------------atatataag-----tttaatatacat-atatacatactttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5375191 122 +   6154872 TGTGTAGAATATGATCATTTTCTAAATTAGGACATTTTCTTAGCCTGTGATTTTTGTAACtatatgaca---tctgttat--agc-taataatt-t------------atatataag-----tttaatatacat-atatacatactt--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74388043 126 + 122973662 TATGTAAAACATAATCATTTTCTAATTTATAAAATTTTCTTGATATGCAGTTTTTGAAGCTATGTAACA---TTCTTTTTTAAAT-TAATAATT-C------------atgtataca-----ttatatatgtac-atatatataCTTTC
i nomLeu3.chr1a            I 2297 C 0
s rheMac8.chr4              29536542 124 + 172585720 TATATAGAATATGATCATTTTCTAAATTAGAACGTTTTCTTGGCCAGTGATTTTTGTAACAATATGATA---TCTGTTAT--AGC-TAATAATT-T------------ATATATAAG-----TTTAATATACGT-ATATACATACTTTC
i rheMac8.chr4             I 40 C 0
s macFas5.chr4              29197656 124 - 170955103 TATATAGAATATGATCATTTTCTAAATTAGAACGTTTTCTTAGCCAGTGATTTTTGTAACAATATGATA---TCTGTTAT--AGC-TAATAATT-T------------ATATATAAG-----TTTAATATACGT-ATATACATACTTTC
i macFas5.chr4             I 40 C 0
s macNem1.NW_012011356v1     2205198 124 -   2996164 --TATAGAATATGATCATTTTCTAAATTAGAACGTTTTCTTAGCCAGTGATTTTTGTAACAATATGATA---TCTGTTAT--AGCTTAATAATTAT------------AATAATAAG-----TTTTAAATACGT-ATATACATACTTTC
i macNem1.NW_012011356v1   I 44 C 0
s cerAty1.NW_012001495v1     2070926 124 -   2157725 TATATAGAATATGATCATTTTCTAAATTAGAACGTTTTCTTAGCCAGTGATTTTTGTAACAATATGACA---TCTGTTAT--AGC-TAATAATT-T------------ATATATAAG-----TTTAATATACGT-ATATACATACTTTC
i cerAty1.NW_012001495v1   I 40 C 0
s chlSab2.chr17             28500892 124 -  71996105 TATATAGAATATGATCATTTTCTAAATTAGAACATTTTCTTAGCCAGTGATTTTTGTAATAATATGACA---TCTGTTAC--AGC-TAATAATT-T------------GTATATAAG-----TTTAATatacat-atatacatactttc
i chlSab2.chr17            I 40 C 0
s manLeu1.NW_012104165v1     2214127 124 +   2316924 TATATAGAATATGATCATTTTCTAAATTAGAACGTTTTCTTAGCCAGTGATTTTTGTAACAATATGACA---TCTGTTAT--AGC-TAATAATT-T------------ATATATAAG-----TTTAATATACGT-ATATACATACTTTC
i manLeu1.NW_012104165v1   I 40 C 0
s calJac3.chr4             171575502 123 - 171630274 TATGTAGAATATAATTATTTTCTAATTTATAACATTTTCTTAGCCTGTGGTGTTTGTAACTGTGTGACA----ATATTAT--GCa-taataatt-t------------atatataag-----tttaatatacat-atataCATACTTTC
i calJac3.chr4             I 36 C 0
s otoGar3.GL873742           1680256 138 -   2232465 tatataGAATATGACCACTTTCTAAATTATGACATTTTCTTAACCCATAGTTTTTGTAATTGTATAATTAATTCTGttat--aat-taatgatt-tagatttaaataaatatatatG-----TATCAT-TACAT-ATATACATAATTTC
i otoGar3.GL873742         I 82 I 16369
s dasNov3.JH570037            355286 125 -    859332 TAAGTAGAATGCTATTATTTCT---GTCATAGCATTTTCTTAATACACG-TTTTTCTAGTTGTATAACA---T-TGttta--ata-aaagaata-t------------ttacataaaaatattttaatgtaaatcatatacataaatta
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I

a score=4664.000000
s hg38.chr6_GL000254v2_alt    357319 1 +   4827813 t
s panTro5.chr6              29331955 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29577707 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74388169 1 + 122973662 T
i nomLeu3.chr1a            C 0 I 464
s rheMac8.chr4              29536666 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29197780 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2205322 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2071050 1 -   2157725 T
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28501016 1 -  71996105 t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2214251 1 +   2316924 T
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171575625 1 - 171630274 T
i calJac3.chr4             C 0 I 8
s dasNov3.JH570037            355411 1 -    859332 c
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680394 16369 -   2232465 I
e gorGor5.CYUI01015250v1     5375313 0 +   6154872 C

a score=29454.000000
s hg38.chr6_GL000254v2_alt    357320 6 +   4827813 atatgt
s panTro5.chr6              29331956 6 + 175400573 atatgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29577708 6 + 173848474 atatgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5375313 5 +   6154872 -tatgt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29536667 6 + 172585720 ATATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29197781 6 - 170955103 ATATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2205323 6 -   2996164 ATATGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2071051 6 -   2157725 ATATGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28501017 6 -  71996105 atatgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2214252 6 +   2316924 ATATGT
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171575634 6 - 171630274 CTATGA
i calJac3.chr4             I 8 C 0
s dasNov3.JH570037            355412 6 -    859332 atatat
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680394 16369 -   2232465 I
e nomLeu3.chr1a             74388170 464 + 122973662 I

a score=7098.000000
s hg38.chr6_GL000254v2_alt    357326 1 +   4827813 a
s panTro5.chr6              29331962 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29577714 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5375318 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74388634 1 + 122973662 A
i nomLeu3.chr1a            I 464 C 0
s rheMac8.chr4              29536673 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29197787 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2205329 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2071057 1 -   2157725 A
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28501023 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2214258 1 +   2316924 A
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171575640 1 - 171630274 A
i calJac3.chr4             C 0 C 0
s dasNov3.JH570037            355418 1 -    859332 a
i dasNov3.JH570037         C 0 I 162
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680394 16369 -   2232465 I

a score=257992.000000
s hg38.chr6_GL000254v2_alt    357327  68 +   4827813 ata----tatat-TTGTAATTAGT--------------TTT-CA----AATACAATTTG-TTGTGCT----------------TGGATTAT-----------------AATAGAAAAGTTATTTTA
s panTro5.chr6              29331963  68 + 175400573 ata----tatat-TTGTAATTAGT--------------TTT-CA----AATACAATTTG-TTGTGCT----------------TGGATTAT-----------------AATAGAAAAGTTATTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29577715  68 + 173848474 ata----tatat-TTGTAATTAGT--------------TTT-CA----AATACAATTTG-TTGTGCT----------------TGGATTAT-----------------AATAGAAAAGTTATTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5375319  68 +   6154872 ata----tatat-TTGTAATTAGT--------------TTT-CA----AATACAATTTG-TTGTGCT----------------TGGATTAT-----------------AATAGAAAAGTTATTTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74388635  72 + 122973662 ATA----CATAT-TTCGAATTGCT--------------TTT-AAAAGGAATAGAATTCT-TTGGACT----------------TGAATTAT-----------------AATAGAAAAGTAATTTTA
i nomLeu3.chr1a            C 0 T 9496
s rheMac8.chr4              29536674  68 + 172585720 ATA----CATAT-TCTTAATTGGT--------------TTT-CA----AATACAACTTG-TTGTGCT----------------TGGATTAT-----------------AATAGTAAAGCtatttta
i rheMac8.chr4             C 0 I 10
s macFas5.chr4              29197788  68 - 170955103 ATA----CATAT-TCTTAATTGGT--------------TTT-CA----AATACAACTTG-TTGTGCT----------------TGGATTAT-----------------AATAGTAAAGCtatttta
i macFas5.chr4             C 0 I 10
s macNem1.NW_012011356v1     2205330  68 -   2996164 ATA----CATAT-TCTTAATTGGT--------------TTTCCA----AATACAACTTG-TTGTGCT----------------TGGATATA-----------------TATAGTAAAGCta-ttta
i macNem1.NW_012011356v1   C 0 I 10
s cerAty1.NW_012001495v1     2071058  68 -   2157725 ATA----CATAT-TCTTGATTGGT--------------TTT-CG----AATACAACTTG-TTGTGCT----------------TGGATTAT-----------------AATAGTAAAGCtatttta
i cerAty1.NW_012001495v1   C 0 I 10
s chlSab2.chr17             28501024  63 -  71996105 ata----cataT-TCTTAATTGGT--------------TTT-CC----AATACAACTTG-TTGTGCT----------------TGGATTAT-----------------AATAGTAAAGC-----TA
i chlSab2.chr17            C 0 I 10
s manLeu1.NW_012104165v1     2214259  68 +   2316924 ATA----CATAT-TCTTAATTGGT--------------TTT-CG----AATACAACTTG-TTGTGCT----------------TGGATTAT-----------------AATAGTAAAGCtatttta
i manLeu1.NW_012104165v1   C 0 I 10
s calJac3.chr4             171575641 119 - 171630274 ACATTTCCACTT-TCTAAATTTGTCACTTTATAGAGCATTC-AA----AATAAAATGCT-TTCCATCTTTAACATTCTTTAGATGGTTTATCAGAAATGGAGTTAGTGAATTAAAAAGTATTACTA
i calJac3.chr4             C 0 I 2
s dasNov3.JH570037            355581  74 -    859332 ATG----TAAATGGCCCAACTATT--------------TTT-CAAAGGAATGCAAACTGTTTGGACT----------------TGGATTAT-----------------ATCAGAAAAGTGATTTTA
i dasNov3.JH570037         I 162 T 61757
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680394 16369 -   2232465 I

a score=819885.000000
s hg38.chr6_GL000254v2_alt    357395 212 +   4827813 ------------TTTTTTGTGGTTTTACTTTTTT-AAAAAAattttaccttaagttctgggatacatgtgcagaacatgcagtattgttacataggtata--tatgtgccatggtggtttgctgc------acctatcaacctgtcatttaggttttaagcccctcatgcattagg-tatttgtcct--aacgctctcctccctgtgccgcca-----ccctt-caacaggc-cccagtgtgt
s panTro5.chr6              29332031 212 + 175400573 ------------TTTTTTGTGGTTTTACTTTTTT-AAAAAAattttacctttagttctgggatacatgtgcagaacgtgcagtattgttacataggtata--tatgtgccatggtggtttgctgc------acctatcaacctgtcatctaggttttaagcccctcatgcattagg-tatttgtcct--aatgctctcctccctgtgccgcca-----ccctt-caacaggc-cccagtgtgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29577783 212 + 173848474 ------------TTTTTTGTGGTTTTACTTTTTT-AAAAAAattttacctttagttctgggatacatgtgcagaacgtgcagtattgttacataggtata--tatgtgccatggtggtttgctgc------acctatcaacctgtcatctaggttttaagcccctcatgcattagg-tatttgtcct--aatgctctcctccctgtgccgcca-----ccctt-caacaggc-cccagtgtgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5375387 213 +   6154872 ------------TTTTTTGTGGTTTTACTTTTTTAAAAAAAattttaccttaagttctgggatacatgtgcagaatgtgcagtattgttacataggtata--tatgtgccatggtggtttgctgc------acctatcaacctgtcatctaggttttaagcccctcatgcattagg-tatttgtcct--aatgctctcctccctgtgccgcca-----ccctt-caacaggc-cccagtgtgt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29536752 213 + 172585720 ------------ttttttgtggttttactttTC--AAAAAAattttactttaagttctgggattcatgtgcagaacgtgcagtattgttacataggtatatgtatgtgccatggtggtttgctgc------acctatcaaccggtcatctaggtttgaatcccctcatgcattagg-tatttgtcct--aatgctctcctccctgtgccccca-----tccct-caataggc-cccagtgtgt
i rheMac8.chr4             I 10 C 0
s macFas5.chr4              29197866 213 - 170955103 ------------ttttttgtggttttactttTC--AAAAAAattttactttaagttctgggattcatgtgcagaacgtgcagtagtgttacataggtatatgtatgtgccatggtggtttgctgc------acctatcaaccggtcatctaggtttgaatcccctcatgcattagg-tatttgtcct--aatgctctcctccctgtgccccca-----tccct-caataggc-cccagtgtgt
i macFas5.chr4             I 10 C 0
s macNem1.NW_012011356v1     2205408 216 -   2996164 ------------tttttgttgtttttacttttCA-AAAAAAattttactttaagttctgggattcatgtgcagaacgtgcagtattgttacataggtatatgtatgtgccatggtggtttgctgc------acctatcaactggtcatctaggtttgaatcccctcatgcattaggttatttgtcac---atgctctcctccctgtgccccac-----cacctacaataggcactcagtgtgt
i macNem1.NW_012011356v1   I 10 C 0
s cerAty1.NW_012001495v1     2071136 213 -   2157725 ------------ttttttgtggttttactttTC--AAAAAAGttttactttaagttctgggattcatgtgcagaacgtacagtattgttacataggtatatgtatgtgccatggtggtttgttgc------acctatcaaccggtcatctaggtttgaatcccctcatgcattagg-tatttgtcct--aatgctctcctccctgtgccccca-----cccct-caataggc-cccagtgtgt
i cerAty1.NW_012001495v1   I 10 C 0
s chlSab2.chr17             28501097 213 -  71996105 ------------TTTTTTGTGGttttacttttt--taaaaaattttactttaatttctgggattcaagtgcagaacgtgcagtattgttacataggtatgtatatgtgccatggtggtttgctgc------acctatcgacccgtcatctaggtttgaatcccctcatgcattaag-tatttgtcct--aatgctctcctccctgtgacccca-----cccct-caacagac-cctagtatgt
i chlSab2.chr17            I 10 C 0
s manLeu1.NW_012104165v1     2214337 213 +   2316924 ------------ttttttgtggttttactttTC--AAAAAAAGtttactttaagttctgggattcatgtgcagaacgtgcagtattgttacataggtatatgtatgtgccatggtggtttgctgc------acctatcaaccggtcatctaggtttgaatcccctcatgcattagg-tatttgtcct--aatgctctcctccctgtgctccca-----gccct-caataggc-cccagtgtgt
i manLeu1.NW_012104165v1   I 10 C 0
s calJac3.chr4             171575762 223 - 171630274 TGTAATACATATTCCTACTTAGttttcttttttt----taaattgcattttaggttttggggtacatgtgcagaacatgcaagacagttgcataggtaca--catgtggcaatgtgatttgctgccttcctccccatcaccca--catctggcatt---tctccccgtgc-------tatccctccccaacttccccccgcactgtccctcccctgttccctc-caacagac-cccagtgtat
i calJac3.chr4             I 2 I 8172
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680394 16369 -   2232465 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1267888.000000
s hg38.chr6_GL000254v2_alt    357607 330 +   4827813 gatgttccccttcctgtgtccacgtgttcttattttcaactcccacttatgagtgag--aacatgtggtgtttggatttctgttcccgtgttagtttgctgagaatgatggtttccagc-ttcatccatgtcccggcaaaggacatgaactcattcttttctatggcta----------catggtgt-atatgtaccacat-tttctttatccagtctgtcactgatgggcatttgggttggttccaagtcttagctgttgtaaatggtgctgcaataaacatatgtgtgcatgtgtctttatagtagaattatttataatcccttgagtatatacccagtaatg
s panTro5.chr6              29332243 330 + 175400573 gatgttccccttcctgtgtccacgtgttcttattttcaactcccacttatgagtgag--aacatgtggtgtttggatttctgttcccgtgttagtttgctgagaatgatggtttccagc-ttcatccatgtcccggcaaaggacatgaactcattcttttctatggcta----------catggtgt-atatgtaccacat-tttctttatccagtctatcactgatgggcatttgggttggttccaagtcttagctgttgtaaatggtgctgcaataaacatatgtgtgcatgtgtctttatagtagaattatttataatcccttgagtatatacccagtaatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29577995 330 + 173848474 gatgttccccttcctgtgtccacgtgttcttattttcaactcccacttatgagtgag--aacatgtggtgtttggatttctgttcccgtgttagtttgctgagaatgatggtttccagc-ttcatccatgtcccggcaaaggacatgaactcattcttttctatggcta----------catggtgt-atatgtaccacat-tttctttatccagtctatcactgatgggcatttgggttggttccaagtcgtagctgttgtaaatggtgctgcaataaacatatgtgtgcatgtgtctttatagtagaattatttataatcccttgagtatatacccagtaatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5375600 329 +   6154872 gatgttccccttcctgtgtccacgtgttcttattttcaactcccacttatgagtgag--aacatgtggtgtttggatttctgttcccgtgttagtttgctgagaatgatggtttccagc-ttcatccatgtcccggcaaaggacatgaactcattcttttctatggcta----------catggtgt-atatgtaccacat-tttctttatccagtctatcactgatgggcatttgggttgattccaagtcttagctgttgtaaatggtgctgcaataaacatatgtgtgcatgtgtctttatagtagaattatttataa-cccttgagtatatacccagtaatg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29536965 340 + 172585720 gatgttccccttcctgtgtccatgtgttcgtattttcaactcccacttatgagtgag--aacatgtggtgtttggttttctgttcctgtgttagtttgctgagaataatggtttccagc-ttcatccatgtccctgcaaaggacatgaactcattcttttccatggctgcatagtattccatggtgt-atatgtgccacag-tttctttatccagtctatcatcgatgggcatttggattggttccaagtctttgctattataaatggtgctgcaataaacatacgtgtgcatgtgtctttataacagaatgatttataatcctttgggtacatatccagtaatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29198079 340 - 170955103 gatgttccccttcctgtgtccatgtgttcgtattttcaactcccacttatgagtgag--aacatgtggtgtttggttttctgttcctgtgttagtttgctgagaatgatggtttccagc-ttcatccatgtccctgcaaaggacatgaactcattcttttccatggctgcatagtattccatggtgt-atatgtgccacag-tttctttatccagtctatcatcgatgggcatttggattggttccaagtctttgctattataaatggtgctgcaataaacatacgtgtgcatgtgtctttataacagaatgatttataatcctttgggtacatatccagtaatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2205624 341 -   2996164 gatgtt-cccttcctgtgtccatgtgttcgtattttcaactcccacttatgagtgagaaaacatgtggtgtttggttttctgttcttgtgttagtttgctgagaatgatggtttccagctttcatccttgtccctgcaaaggacatgaactcattcttttccatggctgcatagtattccatggtgtaatatgtgccacagttttctttatccagtctatcatcgatgggc--tttggttggttccaagtctttgctattataaatggtgc-gcaataaacataagtgtgcatgtgtctttataacagaatgatttataatcctttgggtacatatccagtaatg
i macNem1.NW_012011356v1   C 0 I 1521
s cerAty1.NW_012001495v1     2071349 340 -   2157725 gatgttccccttcctgtgtccatgtgttcgtattttcaactcccacttatgagtgag--aacatgtggtgtttggttttctgttcctgtgttagtttgctgagaatgatggtttccagc-ttcatccatgtccctgcaaaggacatgaactcattcttttccatggctgcatagtattccatggtgt-atatgtgccacag-tttctttatccagtctatcatcgatgggcatttggattggttccaagtctttgctattgtaaatggtgctgcaataaacatatgtgtgcatgtgtctttataacagaatgatttataatcctttgggtacatatccagtaatg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28501310 340 -  71996105 gatgttccccttcctgtgtccgtgtgttcttattttcaactcccacttatgagtgag--aacatgtggtgtttggttttctgttcctgtgttagtttgctgagaatgatggtttcccgc-ttcatccatgtccctgcaaaggacatgaactcattcttttccatggctgcatagtattccatggtgt-atatgtgccacag-tttctttatccagtctatcatcgatgggcatttggattggttccaagtctttgctattgtaaatggtgctgcaataaacatatgtgtgcatgcatctttataacagaatgatttataatcctttgggtacatacccagtaatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2214550 340 +   2316924 gatgttccccttcctgtgtccatgtgttcgtattttcaactcccacttatgagtgag--aacatgtggtgtttggttttctgttcctgtgttagtttgctgagaatgatggtttccagc-ttcatccatgtccctgcaaaggacatgaactcattcttttccatggctgcatagtattccatggtgt-atatgtgccacag-tttctttatccagtctatcatcgatgggcatttggattggttccaagtctttgctattgtaaatggtgctgcaataaacatacgtgtgcatgtgtctttataacagaatgatttataatcctttgggtacatatccagtaatg
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680394 16369 -   2232465 I
e calJac3.chr4             171575985 8172 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=186784.000000
s hg38.chr6_GL000254v2_alt    357937 59 +   4827813 tgattgctgggttaaatagtatttctggctctagatctttgagaaatcgccacactgtc
s panTro5.chr6              29332573 59 + 175400573 tgattgctgggttaaatagtatttctggctctagatccttgagaaatcgccacactgtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29578325 59 + 173848474 tgattgctgggttaaatagtatttctggctctagatccttgagaaatcgccacactgtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5375929 59 +   6154872 tgattgctgggttaaatagtatttctggctctagatccttgagaaatcaccacactgtc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29537305 59 + 172585720 ggattactgggtcaagtagtatttctggctctagatccttgagaaatcgccacactgtc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29198419 59 - 170955103 ggattactgggtcaagtagtatttctggctctagatccttgagaaattgccacactgtc
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     2071689 59 -   2157725 ggattactgggtcaagtagtatttctggctctagatccttgagaaatcgccacactgtc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28501650 59 -  71996105 ggattactgggtcaaatagtatttctggctctagatccttgagaaatcgccacactgtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2214890 59 +   2316924 ggattactgggtcaagtagtatttctggctctagatccttgagaaatcgccacactgtc
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680394 16369 -   2232465 I
e calJac3.chr4             171575985 8172 - 171630274 I
e macNem1.NW_012011356v1     2205965 1521 -   2996164 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1635369.000000
s hg38.chr6_GL000254v2_alt    357996 421 +   4827813 ttccacaatggctgaactaatttacatttccactaacagtgtaaaagtgttcctatttctccccagcattgccagcatctgttgtttcctgac-tttttTTT---TCCCAATGAAATGATTTGAATGGACACTTAAAACTGTTCATGAGTATACAAGATGATAAAGAAAACATTTATTAAATGAATAAAAGCTAAAAAGTGAAATGTTACAAGCAAATATCAAATATCCCGAATCTCTAGAATTTTATTGTTGAATATGCCTTAGTTATTACAAGTGGTCTTTATTCTTGGTGACTTAGGGATTCCCAAGAAATGTGCAATCACTCCTGGCAACTCAAAGTAGTAATAAGTTAACCTCAAGAGAACAATCTTGGTTAAAAAAA-AAATTTTAAGTGTATTTTATAAATTATTATTAtttttatttt
s panTro5.chr6              29332632 422 + 175400573 ttccacaatggctgaactaatttacatttccactaacagtgtaaaagtgttcctatttctccccagcatcgccaacatctgttgtttcctgac-tttttTTT---TCCCAATGAAATGCTTTGAATGGACACTTAAAACTGTTCATGAGTATACAAGATGATAAAGAAAACATTTATTAAATGAATAAAAGCTAAAAAGTGAAATGTTACAAGCAAATATCAAATATCCCGAATCTCTAGAATTTTATTGTTGAATATGCCTTAGTTATTACAAGTGGTCTTTATTCTTGGTGACTTAGGGATTCCCAAGAAATGTGCAATCACTCCTGGCAACTCAAAGTAGTAATAAGTTAACCTCAAGAGAACAATCTTGGTTAAAAAAATAAATTTTAAGTGTATTTTATAAATTATTATTAtttttatttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29578384 422 + 173848474 ttccacaatggctgaactaatttacatttccactaacagtgtaaaagtgttcctatttctccccagcatcgccagcatctgttgtttcctgac-tttttTTT---TCCCAATGAAATGATTTGAATGGACACTTAAAACTGTTCATGAGTATACAAGATGATAAAGAAAACATTTATTAAATGAATAAAAGCTAAAAAGTGAAATGTTACAAGCAAATATCAAATATCCCGAATCTCTAGAATTTTATTGTTGAATATGCCTTAGTTATTACAAGTGGTCTTTATTCTTGGTGACTTAGGGATTCCCAAGAAATGTGCAATCACTCCTGGCAACTCAAAGTAGTAATAAGTTAACCTCAAGAGAACAATCTTGGTTAAAAAAATAAATTTTAAGTGTATTTTATAAATTATTATTAtttttatttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5375988 422 +   6154872 ttccacaatggctgaactaatttacatttccactaacagtgtaaaagtgttcctatttctccccagcatcgccaacatctgttgtttcctgactttttTTTT---TCCCAATGAAATGATTTAAATGGACACTTAAAACTGTTCATGAGTATACAAGATGATAAAGAAAACATTTATTAAATGAATAAAAGCT-AAAAGTGAAATGTTACAAGCAAATATCAAATATCCCGAATCTCTAGAATTTTATTGTTGAATATGCCTTAGTTATTACAAGTGGTCTTTATTCTTGGTGACTTAGGGATTCCCAAGAAATGTGCAATCACTCCTGGCAACTCAAAGTAGTAATAAGTTAACCTCAAGAGAACAATCTTGGTTAAAAAAATAAATTTTAAGTGTATTTTATAAATTATTATTAtttttgtttt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29537364 420 + 172585720 ttccacagtggctgaactaatttacatttccaccaacagtgtaaaagtgttcctgtttctccagagcatcaccaacatctgttgtttcctgac-tttttTTT---CCC--ATGAAATGATTTGAATGGACACTTAAAACTGTTTGTGAGCATACAAGATGataaataaaacatttattaaatgaataaaaactcaaaagtgaaatattataagcaaatatcaaatatcCCGTATCTCTAGAATTTTATTATTGAATATGCCTTAGCTATTACAAGTGGTCTTTATTCCTGGTGACTTAGGGATTCCCAAGAAATGTGCAATCACTCCTGGCAACTCAAAGTAGTAATAAGTTAACCTCAAGAGAACAATCTTGTTTAAAAAAATAAATTTTAAGTGTATTTTATAAATTATTATTAtttttatttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29198478 420 - 170955103 ttccacagtggctgaactaatttacatttccaccaacagtgtaaaagtgttcctgtttctccagagcatcaccaacatctgttgtttcctgac-tttttTTT---CCC--ATGAAATGATTTGAATGGACACTTAAAACTGTTCGTGAGCATACAAGATGATAAATAAAACATTtattaaatgaataaaaactcaaaagtgaaatattataagcaaatatcaaatatcCCGTATCTCTAGAATTTTATTATTGAATATGCCTTAGCTATTACAAGTGGTCTTTATTCTTGGTGACTTAGGGATTCCCAAGAAATGTGCAATCACTCCTGGCAACTCAAAGTAGTAATAAGTTAACCTCAAGAGAACAATCTTGTTTAAAAAAATAAATTTTAAGTGTATTTTATAAATTATTATTAtttttatttt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012001495v1     2071748 416 -   2157725 ttccacagtggctgaactaatttacatttccaccaacagtgtaaaagtgttcctgtttctccagagcatcgccaacatc---tgtttcctgac--tttttTT---CCC--ATGAAATGATTTGAATGGACACTTAAAACTGTTCGTGAGCATACAAGATGATAAATAAAACATTtattaaatgaataaaaactcaaaagtgaaatattataagcaaatatcaaatatcCCGGATCTCTAGAATTTTATTGTTGAATATGCCTTAGCTATTACAAGTGGTCTTTATTCTTGGTGACTTAGGGATTCCCAAGAAATGTGCAATCACTCCTGGCAACTCAAAGTAGTAATAAGTTAACCTCAAGACAACAATCTTGTTTAAAAAAATAAATTTTAAGTGTATTTTATAAATTATTATTAtttttatttt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28501709 423 -  71996105 ttccacaatggctgaactaatttacatttccaccaacagtgtaaaagtgttcctacttctccagagcatcgccaacatctgttgtttcctgac-tttttTTTTTCCCC--ATGAAATGATTTGAATAGACACTTAAAACTGTTTGTGAGCATACAAGATGATAAAGAAACCATTTACTAAATGAATAAAAACTCAAAAGTGAAATGTTATGAGCAAATATCAAATATCCCGGATCTCTAGAATTTTATTGTTGAATATGCCTTAGTTATTACAAGTGGTCTTTATTCTTGGTGACTTAGGGATTCCCAAGAAATGTGCAATCACTCCTGGCAACTCAAAGTAGTAATAAGTTAACCTCAAGAGAACAATCTTGTTTAAAAAAATAAACTTTAAGTGTATTTTATAAATTATTATTAtttttatttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2214949 420 +   2316924 ttccacagtggctgaactaatttatatttccaccaacagtgtaaaagtgttcctgtttctccagagcatcgccaacatctgttgtttcctgac-tttttTTT---CCC--ATGAAATGATTTGAATGGACACTTAAAACTGTTCGTGAGCATACAAGATGataaataaaacatttattaaatgaataaaaactcaaaagtgaaatattataagcaaatatcaaatatcCCGGATCTCTAGAATTTTATTGTTGAATATGCCTTAGCTATTACAAGTGGTCTTTATTCTTGGTGACTTAGGGATTCCCAAGAAATGTGCAATCACTCCTGGCAACTCAAAGTAGTAATAAGTTAACCTCAAGAGAACAATCTTGTTTAAAAAAATAAATTTTAAGTGTATTTTATAAATTATTATTAtttttatttt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2078243 421 -   3067355 ttccacaatggctgaactaatttacatttccaccaacagtgtaaaagtgttcctatttctccagagcatcgccaacatctgttgtttcctgac-attttTTT---CCC-AATGAAATGATTTGAATGGACACTTAAAGCTGTTTGTGAGCATACAAGATGATAAAGAAAACATTtattaaatgaataaaagctcaaaagtgaaatattatacataaatatcaaatatcCTGAATCTCTAGAATTTTATTGTTGAATATGCCTTAGCTATTACAAGTGGTCTTTATTCTTGGTGACTTAGGGATTCCCAAGAAATGTGCAATCACTCCTGGCAACTCAAAGTAGTAATAAGTTAACCTCAAGAGAACAATCTTGTTTAAAAAAATAAATTTTAAGTGTATTTTATAAATTATTATTAtttttatttt
i colAng1.NW_012115566v1   N 0 I 298
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680394 16369 -   2232465 I
e calJac3.chr4             171575985 8172 - 171630274 I
e macNem1.NW_012011356v1     2205965 1521 -   2996164 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=2042011.000000
s hg38.chr6_GL000254v2_alt    358417 650 +   4827813 actttaagttctgggatatatgtgtagaacgtgcaggtttgttacataggtatacatgtgccataatggtttgctgcacctatcaacctgtcatctttaagccctgcatgcattaggtatttgtcctaatgctctccctccccttgccccccaccccctgacaggccccggtgtgtaaagttcccctccctgtgtccatgtgtgctcattgttcaactctcacttatgagtgagaacatgaggtgtttggttttctgttcctgtgttagtttgctgagaatgatggcttccagcttcatccgtatccctgcaaaggacgtgaactcattcttttttatggctacatagtattccatgctgtataATTGTATTAATAGCACATCCAGGGGTGCAGCATTGCTACATGTCTTCTCTATCCAGGCACACTGATCGATCAGGGTAATTTATTTATTCATTGTTTGCAAGGTTCTATGCCAGCCAGCCAGTGCCAAGGACTTCAGAGATAAGCCACAATACCTGCCTATGTGTCTGGTTGGAACATGAACATGGAAACAAACCATTTAAtcatttactcaataaatctttatgtcatggtgataagtgtcaggcactgtcatgtgcacaggagatatattgataatcaaaagaaa
s panTro5.chr6              29333054 649 + 175400573 actttaagttctgggatacatgtgtagaacgtgcaggtttgttacataggtatacatgtgccataatggtttgctgcacctatcaacctgtcatctttaagccctgcatgcattaggtatttgtcctaatgctctccctccccttgccccccaccccctgacaggccccggtgtgtaaagttcccctccctgtgtccatgtgttctcattgttcaactcccacttatgagtgagaacatgaggtgtttggttttctgttcctgtgttagtttgctgagaatgatggcttc-agcttcatccgtatccctgcaaaggacgtgaactcattcttttttatggctgcatagtattccatgctgtataATTGTATTAATAGCACATCCAGGGGTGCAGCATTGCTACATGTCTTCTCTATCCAGGCACACTGATCGATCAGGGTAATTTATTTATTCATTGTTTGCAAGGTTCTATGCCAGCCAGCCAGTGCCAAGGACTTCAGAGATAAGCCACAATACCTGCCTATGCGTCTGGTTGGAACATGAACATGGAAACAAACCATTTAAtcatttactcaataaatctttatgtcatggtgataagtgtcaggcactgtcatgtgcacaggagatatattgataatcaaaagaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29578806 650 + 173848474 actttaagttctgggatacatgtgtagaacgtgcaggtttgttacataggtatacatgtgccataatggtttgctgcacctatcaacctgtcatctttaagccctgcatgcattaggtatttgtcctaatgctctccctccccttgccccccaccccctgacaggccccggtgtgtaaagttcccctccctgtgtccatgtgttctcattgttcaactcccacttatgagtgagaacatgaggtgtttggttttctgttcctgtgttagtttgctgagaatgatggcttccagcttcatccgtatccctgcaaaggacgtgaactcattcttttttatggctgcatagtattccatgctgtataATTGTATTAATAGCACATCCAGGGGTGCAGCATTGCTACATGTCTTCTCTATCCAGGCACACTGATCGATCAGGGTAATTTATTTATTCATTGTTTGCAAGGTTCTATGCCAGCCAGCCAGTGCCAAGGACTTCAGAGATAAGCCACAATACCTGCCTATGCGTCTGGTTGGAACATGAACATGGAAACAAACCATTTAAtcatttactcaataaatctttatgtcatggtgataagtgtcaggcactgtcatgtgcacaggagatatattgataatcaaaagaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5376410 650 +   6154872 actttaagttctggaatacatgtgtagaacgtgcaggtttgttacataggtatacatgtgccataatggtttgctgcacctatcaacctgtcatctttaagccctgcatgcattaggtatttgtcctaatgctctccctccccttgccccccaccccctgacaggccccggtgtgtaaagttcccctccctgtgtccatgtgttctcattgttcaactcccacttatgagtgagaacatgaggtgtttggttttctgttcctgtgttagtttgctgagaatgatggcttccagcttcatccgtatccctgcaaaggatgtgaactcattcttttttatggctgcatagtattccatgctgtataATTGTATTAATAGCACATCCAGGGGTGCAGCATTGCTACATGTCTTCTCTATCCAGGCACACTGATCGATCAGGGTAATTTATTTATTCATTGTTTGCAAGGTTCTATGCCAGCCAGCCAGTGCCAAGGACTTCAGAGATAAGCCACAATACCTGCCTATGTGTCTGGTTGGAACATGAACATGGAAACAAACCATTTAAtcatttactcaataaatctttatgtcatggtgataagtgtcaggcactgtcatgtgcacaggagatatattgataatcaaaagaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29537784 649 + 172585720 actttaagttctgggatatctgtgcagaacatgcaggtttgttacataggtatacatgtgccatagtggtttgctgcacccatcaacccatcatctttaagccctgcatgcattaggtatttgtcctgatgctctccctccccttgcccccgaccccctcacaggccctggtgtataatgttcccctccctgtgtctgtgtgttctcattgttcaactcccacttatgagtgagaacatatggtgtttggttttctgttcctgtgttagtttgctgagggtgatggcatccagctttatccatgtccctgcaaaggacatgaactcattcttttttatggctgcatagtattccatggtgtataagtgTATTGATAGCACATCCAGGGGTGCAGCATTCCTACATGTCTTCTCTATCCAGGCACACTGATCAATCAGGGTAATTTATTTATTCATTCTTTGCAAGGTTCTATGCCAGCCAGCCAGCGCCAAGGAATTCAGAGATAAGCCGCAATACCTGCCTATGTCTCTGGCTGTAACATGAACATGGAAACAAGCCATTTAAtcatttactcaataaatctttatgtaatggtgataagtgtcaggcactgtcatatgcacaggatatatattgataatcaaaagaa-
i rheMac8.chr4             C 0 I 315
s macFas5.chr4              29198898 649 - 170955103 actttaagttctgggatatctgtgcagaacatgcaggtttgttacataggtatacatgtgccatagtggtttgctgcacccatcaacccatcatctttaagccctgcatgcattaggtatttgtcctgatgctctccctccccttgcccccgaccccctcacaggccctggtgtataatgttcccctccctgtgtctgtgtgttctcattgttcaactcccacttatgagtgagaacatatggtgtttggttttctgttcctgtgttagtttgctgagggtgatggcatccagctttatccatgtccctgcaaaggacatgaactcattcttttttatggctgcatagtattccatggtgtataagtgTATTGATAGCACATCCAGGGGTGCAGCATTCCTACATGTCTTCTCTATCCAGGCACACTGATCAATCAGGGTAATTTATTTATTCATTCTTTGCAAGGTTCTATGCCAGCCAGCCAGCGCCAAGGAATTCAGAGATAAGCCGCAATACCTGCCTATGTCTCTGGCTGTAACATGAACATGGAAACAAGCCATTTAAtcatttactcaataaatctttatgtaatggtgataagtgtcaggcactgtcatatgcacaggatatatattgataatcaaaagaa-
i macFas5.chr4             C 0 I 317
s cerAty1.NW_012001495v1     2072164 649 -   2157725 actttaagttctgggatatctgtgcagaacatgcaggtttgttacataggtatacatgtgccatagtggtttgctgcacccatcaacccatcatctttaagccctgcatgcattaggtatttgtcctgatgctctccctccccttgcccccgaccccctgacaggccctggtgtataatgttcccctccctgtgtctgtgtgttctcattgttcaactctcacttatgagtgagaacatatggtgtttggttttctgttcctgtgttagtttgctgagggtgatggcatccagctttatccatgtccctgcaaaggacatgaactcattcttttttatggctgcatagtattccatggtgtataagtgTATTGATAGCACATCCAGGGGTGCAGCATTCCTACATGTCTTCTCTATCCAGGCACACTGATCAATCAGGGTAATTTATTTATTCATTCTTTGCAAGGTTCTATGCCAGCCAGCCAGCGCCAAGGAATTCAGAGATAAGCCGCAATACCTGCCTATGTCTCTGGCTGTAACATGAACATAGAAACAAACCATTTAAtcatttactcaataaatctttatgtaatggtgataagtgtcaggcactgtcatatgcacaggagatatattgataatcaaaagaa-
i cerAty1.NW_012001495v1   C 0 I 315
s chlSab2.chr17             28502132 648 -  71996105 actttaagttctgggatacctgtgcagaacatgcaggtttgttacataggtatacatgtgtcatagtggtttgctgcacctatcaacccatcatctttaagctctgcatgcattaggtatttgtcctgatgctctccttccccttgccccccaccccctgacaggccctggtgagtaatgttcccctccctatgtctgtgtgttctcactgttcgactcccacttacaggtgagaacatacggtgtttggttttctgttcctgtattagtttgctgaggatgatggcatccagctttatccatgtccctgcaaaggacatgaactcattcttttttatggctgcatagtattccatggtgtataagtgTATTGATAGCACATCCAGGGGTGCAGCATTCCTACATGTCTTCTCTATCCAGGCGCACTGATCAATCAGGGTAATTTATTTATTCATTCTTTGCAAGGTTCTATGCCAGCCAGCCAGTGCCAAGGAATTCAGAGATAAGCCACAATACCTGCCTATGTCTCTGGCTGTAACATGAACAT-GAAACAAACCATTTAAtcatttactcaataaatctttatgtaacggtgataagtgtcaggcactgtcatatgcacaggagatatattgataatcaaaagaa-
i chlSab2.chr17            C 0 I 323
s manLeu1.NW_012104165v1     2215369 649 +   2316924 actttaagttctgggatatctgtgcagaacatgcaggttggttacataggtatacatgtgccatagtggtttgctgcacccatcaacccatcatctttaagccctgcatgcattaggtatttgtcctgatgctctccctccccttgccccagaccccctgacaggccctggtgtataatgttcccctccctgtgtctgtgtgttctcattgttcaactctcacttatgagtgagaacatatggtgtttggttttctgttcctgtggtagtttgctgagggtgatggcatccagctttatccatgtccctgcaaaggacatgaactcattcttttttatggctgcatagtattccatggtgtaaaagtgTATTGATAGCACATCCAGGGGTGCAGCATTCCTACATGTCTTCTCTATCCAGGCACACTGATCAATCAGGGTAATTTATTTATTCATTCTTTGCAAGGTTCTATGCCAGCCAGCCAGCGCCAAGGAATTCAGAGATAAGCCGCAATACCTGCCTATGTCTCTGGCTGTAACATGAACATGGAAACAAACCATTTAAtcatttactcaataaatctttatgtaatggtgataagtgtcaggcactgtcatatgcacaggagatatattgataatcaaaagaa-
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680394 16369 -   2232465 I
e calJac3.chr4             171575985 8172 - 171630274 I
e colAng1.NW_012115566v1     2078664 298 -   3067355 I
e macNem1.NW_012011356v1     2205965 1521 -   2996164 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=57035.000000
s hg38.chr6_GL000254v2_alt    359067 11 +   4827813 taaagtctctg
s panTro5.chr6              29333703 11 + 175400573 taaagtctctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29579456 11 + 173848474 taaagtctctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5377060 11 +   6154872 taaagtctctg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29538748 11 + 172585720 taaagtctctg
i rheMac8.chr4             I 315 C 0
s macFas5.chr4              29199864 11 - 170955103 taaagtctctg
i macFas5.chr4             I 317 C 0
s macNem1.NW_012011356v1     2207486 11 -   2996164 Taaagtctctg
i macNem1.NW_012011356v1   I 1521 C 0
s cerAty1.NW_012001495v1     2073128 11 -   2157725 taaagtctctg
i cerAty1.NW_012001495v1   I 315 C 0
s chlSab2.chr17             28503103 11 -  71996105 taaagtctctg
i chlSab2.chr17            I 323 C 0
s manLeu1.NW_012104165v1     2216018 11 +   2316924 taaagtctctg
i manLeu1.NW_012104165v1   C 0 I 315
s colAng1.NW_012115566v1     2078962 11 -   3067355 Taaagtctctg
i colAng1.NW_012115566v1   I 298 C 0
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680394 16369 -   2232465 I
e calJac3.chr4             171575985 8172 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=2533761.000000
s hg38.chr6_GL000254v2_alt    359078 536 +   4827813 ttctaatgaagcttacatactagtaaggagatagaaaactaataataagtaaatagatatataatacaatgtcagatagtgataaatgctatgaagaaaaagaaagcagggtaagagaatcaaaattagctgaggctgttactttagacagcatggtcagtcagtttctgtgagggggcaacatttgacctgaacagagttagggGTTCTCATTCACTTGGAAGATTCTAAACTGAGATTTCGAGTTTGAA-TTTTTTTTGAAATGTTGCCAGTTAATGCATCAATAATTTATCAGCCGGTGTTC--------------------ATTATATAACGTTATACTTTAACAAGGACACTAAGCACTAAACTATTTAAAGATCTTCGTCTTTACAAAGGTACTACAAAGGAAACTACAAAGACTGTAGTTTCTGAAGTTAAGAAATGCAGACCGATCCTTTGTTTCTGCATTCAtccatttgcattgctataaaggaatacctaagact-gggtaatttacaaagaaaaaaggtttattttggctcacagttGTTTCCTGA
s panTro5.chr6              29333714 536 + 175400573 ttctaatgaagcttacatactagtaaggagatagaaaactaataataagtaaatagatatataatacaatgtcagatagtgataaatgctatgaagaaaaagaaagcagggtaagagaatcaaaattagctgaggctgttactttagacagcatggtcagtcagtttctgtgagggggcaacatttgacctgaacagagttagggGTTCTCATTCACTTGGAAGATTCTAAACTGAGATTTCGAGTTTGAA-TTTTTTTTGAAATGTTGCCAGTTAATGCATCAATAATTTATCAGCCGGTGTTC--------------------ATTATATAACATTATACTTTAACAAGGACACTAAGCACTAAACTATTTAAAGATCTTTGTCTTTACAAAGGTACTACAAAGGAAACTACAAAGACTGTAGTTTCTGAAGTTAAGAAATGCAGACCGATCCTTTGTTTCTGCATTCAtccatttgcattgctataaaggaatacctgagact-gggtaatttacaaagaaaaaaggtttattttggctcacagttGTTTCCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29579467 536 + 173848474 ttctaatgaagcttacatactagtaaggagatagaaaactaataataagtaaatagatatataatacaatgtcagatagtgataaatgctatgaagaaaaagaaagcagggtaagagaatcaaaattagctgaggctgttactttagacagcatggtcagtcagtttctgtgagggggcaacatttgacctgaacagagttagggGTTCTCATTCACTTGGAAGATTCTAAACTGAGATTTCGAGTTTGAA-TTTTTTTTGAAATGTTGCCAGTTAATGCATCAATAATTTATCAGCCGGTGTTC--------------------ATTATATAACATTATACTTTAACAAGGACACTAAGCACTAAACTATTTAAAGATCTTTGTCTTTACAAAGGTACTACAAAGGAAACTACAAAGACTGTAGTTTCTGAAGTTAAGAAATGCAGACCGATCCTTTGTTTCTGCATTCAtccatttgcattgctataaaggaatacctgagact-gggtaatttacaaagaaaaaaggtttattttggctcacagttGTTTCCTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5377071 552 +   6154872 ttctaatgaagcttacatactagtaaggagatagaaaac---taataagtaaatagatatataatacaatgtcagatagtgataaatgctatgaagaaaaagaaagcagggtaagagaatcaaaattagctgaggctgttactttagacagcatggtcagtcagtttctgtgagggggcaacatttgacctgaacagagttagggGTTCTCATTCACTTGGAAGATTCTAAACTGAGATTTCGAGTTTGAA-TTTTTTTTGAAATGTTGCCAGTTAATGTATCAATAATTTATCAGCCGGTGTTCATTAtataacattatactttattatataacattatactttaACAAGGACACTAAGCACTAAACTATTTAAAGATCTTTGTCTTTACAAAGGTACTACAAAGGAAACTACAAAGACTGTAGTTTCTGAAGTTAAGAAATGCAGACCGATCCTTTGTTTCTGCATTCAtccatttgcattgctataaaggaatacctgagact-gggtaatttacaaagaaaaaa-gtttattttggctcacagctgtttcctgA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29538759 532 + 172585720 ttctaatgaagcttacctactagtaaggagatagaaaactaataataaataaatagatatatagtacaatgtcagatagtgataaatgctatgaagaaaaaca---cagggtaagagaataaaaattaactgaggctgttactttagacagcatggtcagtcagtttctctgagggggcaacatttgacctgaacagagttagggGTTCTCATTCTCTTGGAAGATTCTATACTGAGATTTCGAGTTTGAATTTTTTTTTGAAATATTGCCATTTAATGCATCAATGATTTATCAGCCCGTCTTC--------------------ATTATATAACATTATATTTTAACAAGAACACTAAACACTAAACTATTTAACGACCTTTGTCTTTACACAGGCACTACAAAGGAAACTGC--AGACTGTAGTTTTTGAAGTTAGGAAATGCAGACTGATCCTTTCTTTCTGCATTCAtccatttgcattgctataaaggaatacctgagact-gggtaatttacaaagaaaaaaggtttattttggctcacagttgtttcctga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29199875 532 - 170955103 ttctaatgaagcttacctactagtaaggagatagaaaactaataataaataaatagatatatagtacaatgtcagatagtgataaatgctatgaagaaaaaca---cagggtaagagaataaaaattaactgaggctgttactttagacagcatggtcagtcagtttctctgagggggcaacatttgacctgaacagagttagggGTTCTCATTCTCTTGGAAGATTCTATACTGAGATTTCGAGTTTGAATTTTTTTTTGAAATATTGCCATTTAATGCATCAATGATTTATCAGCCCGTCTTC--------------------ATTATATAACATTATATTTTAACAAGAACACTAAACACTAAACTATTTAACGACCTTTGTCTTTACACAGGCACTACAAAGGAAACTGC--AGACTGTAGTTTTTGAAGTTAGGAAATGCAGACTGATCCTTTCTTTCTGCATTCAtccatttgcattgctataaaggaatacctgagact-gggtaatttacaaagaaaaaaggtttattttggctcacagttgtttcctga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2207497 532 -   2996164 ttctaatgaagcttacctactagtaaggagatagaaaactaataataaataaatagatatatagtacaatgtcagatagtgataaatgctatgaagaaaaaca---cagggtaagagaataaaaattaactgaggctgttactttagacagcatggtcagtcagtttctctgagggggcaacatttgacctgaacagagttagggGTTCTCATTCTCTTGGAAGATTCTACACTGAGATTTCGAGTTTGAATTTTTTTTTGAAATATTGCCATTTAATGCATCAATGATTTATCAGCCCGTCTTC--------------------ATTATATAACATTATATTTTAACAAGAACACTAAACACTAAACTATTTAACGACCTTTGTCTTTACACAGGCACTACAAAGGAAACTGT--AGACTGTAGTTTTTGAAGTTAGGAAATGCAGACTGATCCTTTCTTTCTGCATTCAtccatttgcattgctataaaggaatacctgagact-gggtaatttacaaagaaaaaaggtttattttggctcacagttgtttcctga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2073139 532 -   2157725 ttctaatgaagcttacatactagtaaggagatagaaaactaataataaataaatagatatatagtacaatgtcagatagtgataaatgctatgaagaaaaaca---cagggtaagagaataaaaattaactgaggctgttactttagacagcatggtcagtcagtttctctgagggggcaacatttgacctgaacagagttagggGTTCTCATTCTCTTGGAAGATTCTATACTGAGATTTCGAGTTTGAATTTTTTTTTGAAATATTGCCATTTAATGCATCAATGATTTATCAGCCCGTCTTC--------------------ATTATATAACATTATATTTTAACAAGAACACTAAACACTAAACTATTTAACGACCTTTGTCTTTACACAGGCACTACAAAGGAAACTGC--AGACTGTAGTTTTTGAAGTTAGGAAATGCAGACTGATCCTTTCTTTCTGCATTCAtccatttgcattgctataaaggaatacctgagact-gggtaatttacaaagaaaaaaggtttattttggctcacagttgtttcctga
i cerAty1.NW_012001495v1   C 0 I 1056
s chlSab2.chr17             28503114 533 -  71996105 ttctaatgaagcttgcatactagtaaggagatagaaaactaataataaataaatagatatatagtacaatgtcagatagtgataaatgctatgaagaaaaaca---cagggtaagagaataaaaattaactgaggctgttacttcagacagcatggtcagtcagtttctctgagggggcaacatttgacctgaacagagttagggGTTCTCATTCTCTTGGAAGATTCTATACTGAGATTTCGAGTTTGAA-TTTTTTTTGAAATGTTGCCATTTAATGTATCAATGATTTATCAGCCCGTCTTC--------------------ATTATATAACATTATATTTTAACAAGAACACTAAACACTAAACTATTTAACGACCTTTGCCTTTACACAGGCACTACAAAGGAAACTGCAAAGACTGTAGTTTTTGAAGTTAGGAAATGCAGACTGATCCTTTCTTTCTGCATTCAtccatttgcattgctataaaggaatacctgagact-gggtaatttacaaagaaaaaagttttattttggctcacagttgtttcctga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2216344 532 +   2316924 ttctaatgaagcttacatactagtaaggagatagaaaactaataataaataaatagatatatagtacaatgtcagatagtgataaatgctatgaagaaaaaca---cagggtaagagaataaaaattaactgaggctgttactttagacagcatggtcagtcagtttctctgagggggcaacatttgacctgaacagagttagggGTTCTCATTCTCTTGGAAGATTCTATACTGAGATTTCGAGTTTGAATTTTTTTTTGAAATATTGCCATTTAATGCATCAATGATTTATCAGCCCGTCTTC--------------------ATTATATAACATTATATTTTAACAAGAACACTAAACACTAAACTATTTAACGACCTTTGTCTTTACACAGGCACTACAAAGGAAACTGC--AGACTGTAGTTTTTGAAGTTAGGAAATGCAGACTGATCCTTTCTTTCTGCATTCAtccatttgcattgctataaaggaatacctgagact-gggtaatttacaaagaaaaaaggtttattttggctcacagttgtttcctga
i manLeu1.NW_012104165v1   I 315 C 0
s colAng1.NW_012115566v1     2078973 535 -   3067355 ttctaatgaagcttacatactagtaaggagatagaaaactaataataaataaatagatatatagaacaatgtcagatagtgataaatgctatgaagaaaaaag---cagggtaagagaatcaaaattaactgaggctgttactttagacagcatggtcagtcagtttctctgagggggcaacatttgacctgaacagagttagggGTTCTCATTCACTTGGAAGATTCTATACTGAGGTTTCAAGTTTGAATTTTTTTTTGAAATGTTGCTATTTAATGCATCAATGATTTATCAGCCCGTCTTC--------------------ATTATATAACATTATATTTTAACAAGAACACTAAGCACTAAACTATTTAACGACCTTTGTCTTTACACAGGCACTACAAAGGAAACTACAAAGACTGTAGTTTTTGAAGTTAGGAAATGCAGACTGATCCTTTCTTTCTTCACTCAtccatttgcattgctataaaggaatacctgagactggggtaatttacaaagaaaaaaggtttattttggctcacagttgtttcctga
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680394 16369 -   2232465 I
e calJac3.chr4             171575985 8172 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=33843.000000
s hg38.chr6_GL000254v2_alt    359614 10 +   4827813 CTTTTTAATA
s panTro5.chr6              29334250 10 + 175400573 CTTTTTAata
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29580003 10 + 173848474 CTTTTTAata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5377623 10 +   6154872 CTTTTTAata
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29539291 10 + 172585720 cctcttaata
i rheMac8.chr4             C 0 I 1043
s macFas5.chr4              29200407 10 - 170955103 cctcttaata
i macFas5.chr4             C 0 I 1029
s macNem1.NW_012011356v1     2208029 10 -   2996164 cctcttaata
i macNem1.NW_012011356v1   C 0 I 1093
s chlSab2.chr17             28503647 10 -  71996105 ccttttaata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2216876 10 +   2316924 cctcttaata
i manLeu1.NW_012104165v1   C 0 I 1046
s colAng1.NW_012115566v1     2079508 10 -   3067355 ccttttcata
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680394 16369 -   2232465 I
e calJac3.chr4             171575985 8172 - 171630274 I
e cerAty1.NW_012001495v1     2073671 1056 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=2730.000000
s hg38.chr6_GL000254v2_alt    359624 2 +   4827813 at
s panTro5.chr6              29334260 2 + 175400573 at
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29580013 2 + 173848474 at
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5377633 2 +   6154872 at
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17             28503657 2 -  71996105 at
i chlSab2.chr17            C 0 I 1039
s colAng1.NW_012115566v1     2079518 2 -   3067355 at
i colAng1.NW_012115566v1   C 0 I 1072
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680394 16369 -   2232465 I
e calJac3.chr4             171575985 8172 - 171630274 I
e manLeu1.NW_012104165v1     2216886 1046 +   2316924 I
e cerAty1.NW_012001495v1     2073671 1056 -   2157725 I
e macNem1.NW_012011356v1     2208039 1093 -   2996164 I
e macFas5.chr4              29200417 1029 - 170955103 I
e rheMac8.chr4              29539301 1043 + 172585720 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=14196.000000
s hg38.chr6_GL000254v2_alt    359626 26 +   4827813 atatatattttatatatattatatat
s panTro5.chr6              29334262 26 + 175400573 atatatattttatatatattatatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29580015 26 + 173848474 atatatattttatatatattatatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5377635 26 +   6154872 atatatattttatatatattatatat
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680394 16369 -   2232465 I
e calJac3.chr4             171575985 8172 - 171630274 I
e colAng1.NW_012115566v1     2079520 1072 -   3067355 I
e manLeu1.NW_012104165v1     2216886 1046 +   2316924 I
e chlSab2.chr17             28503659 1039 -  71996105 I
e cerAty1.NW_012001495v1     2073671 1056 -   2157725 I
e macNem1.NW_012011356v1     2208039 1093 -   2996164 I
e macFas5.chr4              29200417 1029 - 170955103 I
e rheMac8.chr4              29539301 1043 + 172585720 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=179.000000
s hg38.chr6_GL000254v2_alt    359652 12 +   4827813 --atatatatatTT--
s panTro5.chr6              29334288  8 + 175400573 --atattt----tt--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29580041  8 + 173848474 --atattt----tt--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5377661  9 +   6154872 --atatat---ttt--
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29201446 12 - 170955103 aTATGTAT----TTTG
i macFas5.chr4             I 1029 C 0
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680394 16369 -   2232465 I
e calJac3.chr4             171575985 8172 - 171630274 I
e colAng1.NW_012115566v1     2079520 1072 -   3067355 I
e manLeu1.NW_012104165v1     2216886 1046 +   2316924 I
e chlSab2.chr17             28503659 1039 -  71996105 I
e cerAty1.NW_012001495v1     2073671 1056 -   2157725 I
e macNem1.NW_012011356v1     2208039 1093 -   2996164 I
e rheMac8.chr4              29539301 1043 + 172585720 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=2120.000000
s hg38.chr6_GL000254v2_alt    359664 2 +   4827813 TT
s panTro5.chr6              29334296 2 + 175400573 tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29580049 2 + 173848474 tt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5377670 2 +   6154872 TT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29201458 2 - 170955103 TC
i macFas5.chr4             C 0 C 0
s colAng1.NW_012115566v1     2080592 2 -   3067355 TT
i colAng1.NW_012115566v1   I 1072 C 0
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680394 16369 -   2232465 I
e calJac3.chr4             171575985 8172 - 171630274 I
e manLeu1.NW_012104165v1     2216886 1046 +   2316924 I
e chlSab2.chr17             28503659 1039 -  71996105 I
e cerAty1.NW_012001495v1     2073671 1056 -   2157725 I
e macNem1.NW_012011356v1     2208039 1093 -   2996164 I
e rheMac8.chr4              29539301 1043 + 172585720 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=17236580.000000
s hg38.chr6_GL000254v2_alt    359666 3693 +   4827813 ATCATTGGGATTAAATTTTGGCCTGGTGTTCACTTTCTTTATATATTTATGAACAATTTAATAATGAGGTGAAATAGCCTTAAGTCTGATATATGATGCACCCACATATAAATGGAAATGGCATGCACAAAGACACTTTACTATTGGAACTGTATTGGAAAATTTATGAAATTTTAGGTAAAATTGCACCTAAAATTGTGTTATTAGTGACTGTAAGTAGCAATGCTAAATTTATTGTACTTGATGAATGAATGTATTTAGGCTAGTCATGGTTACTTTGGTTTAAATGTCTAAATAACATCTTTAGTTTTAAAAATGTGTTTGTAAT-TTGTACTATTGACAGGAGGATATTCTTGGACTGCAGCGGTTATTGGCAATGTGTGATTTGTGTTTTCTTACTTTATAGAATTATCTAATGTGATATGCTGATTTTTACAGGTAATATTTAGATATTTCTAATAATTGTATATTTGACAACCTACTAAAATGATTTGCTTTGGGAAAAAACTGaaaaacaatactcaaacataggctgcctgtaagaggctaactttaacttaaagaacacacattgactgaaaaaaatatttcatgcaagtagaaaccaaaagacagcaggggtagctctacttatattagacagactttaagtccaaaactgtaaaaagagacagagaaagtcattacatgataaaagggtcaattcatcaaaaggacgtaacaattgtaaatatatatacacctaatactagatcatctaaatgtataaagaaagtattaatagacc-taaaaagaaacagactgcaatacagtaatagcagg-gtttttcaacacttcactttcaacaatgaacatgtcatctagacagaaatcaataaggaaacactggacttgaaacgcacattagatcaaatggacctaacagacatatatagaacattccatccaacagcaacagaatactcattcttctcaagtgcaaatgggacattatccaggatcaaatattagggaacaaaataagtctccacagttttaagaagatcgaaatcatatcaagtatcttttctgaccacaaagttatgaaagtagaagtgaataataggagaaaatttaaaatatttacaaacgtggaaattaaacaacatgctcctgaataaacaatgggttaaataaaaaatcaaaagcaaaattaaaaaaaat---------------------------------------------cttaagacagatgaaaatgaaaacacaacataccacaacttatggcatgtagcaaaagaagatattagcaagaggaatgtttgtagtaataaatgcctatattaaaaaagaagaaagatcccaaacaa----cctaatgttacatgtcaagaaaccagaaaaagagaagagcaaactaatcccaaagttagcagaaggaaggaaataacaaagatcagagcagaaataaataagaagctagaaaacaatagaatgcattcacaaaactaagacttgaatttttgaaaagataaaaacaattggcaaaacttgagtagaccaactaagaagaaaa--gaagactctaataaagtcaaaaatgaaagaggagacattacaattgatactacagaagtacaaaagctcataaaagaatactatgaacaattttacaccaacgaatagggtaacctagaagaaatggttaaatttctagaaacataacaaaaatgaatcatgaaaaaaacagaaaatctgaacagactaataatgagtaaggaggttgaatcagtaataaaagtcttctaccaaacaaaaacccagaatatgatggattttgcattcatggtttggaagaattaatattatta--aaatatgtgtactacctaaagtgatacacagattcagtgcaatttctataaaagttcaatgacttttttgtttcacagaaatagaaaaagcaatttaaaaattcatatggaatgacaaaaacccctaagtagctgaagcacttttgagcaaaaagagcaaagctggaggcatcacactacctgtttcaaaatatattacacagttatagtattcaaaacagaaaggtagtggcataacaacagacacacggaccaatgtaatgtgatagagagcccagagataaactcatgcatttgtggttaactgatttttgccaaagatgccaagaatgaacacactatggagaaagggcagtatctttaataaatgatgctgggaaaatcaaatacccaaatacagaacaatgaaattgaaaccttatttcacaccatatgcaaaaatcctctaaaaatggtttaaagatttaaatgtgtgaccagaaaatgtaaaattactagaagaaaacatagggaaaaatgttcttgaaattaatcttggcaataatttattggtgatgatctcaatagcacaggaaaccaaagcagaaatagacaaatgggattacctcaaaccaaaaaccttctgtataacaaagtaaataacggattgaagagacaacccatggactgggagaaaatatttacaaaccatacatggctaatatccaaaatatgtaagaaatgcaaacaacttaaatttgttagcaagaaaacaaagaaccccttttaaaactgagcaaaacacttaatggacatctttcaaaagatgacataaaagactaacagatacataacaaaatttctcaa----------catcaaggaaatacaaattaaaaccacaataagatatcacctcatacctgttagaatggctatatcaataaaataagagttaataagtattagcaaggatgtggagaagggaatccttatatactaatggtagtaatgtaaattaatacagccattattgaaatcagcatggaggttcctcaaaa-aaagatagaattaccatatgatccagcaactatatttctgagtacatagccaaagagattgaaattaatatgttaaaaaTAtattggtagattttcctctaatttggtcttaacgtctctctttgaagaggagccagaaactctagccctgctctgatgggctccagtggaggtggttgtggttgtggatgttttcagtgtttttttcgtggaatacttctatatcctgatggagagctaatgcctaattgtcctatttatgaccaggtgtccctctcactggaaactcattttcactggcagacacccttgtggctcttgtctgactagtgtgtccagttcattcctaccaagataaccactctttaagagagccttgtccagaaaagaagttaatttcacgtatgtcagtcacgcgagaagcaagt---aaaaaaaaacacgtaatagaagtagttttattacttaaagatcca-gagagaagaaggaaactttcctcacaggcctaacgggagaaggggcagccctcagagacatgcatgctcaaccagtgggtgggtagcaagggagagtgagtgacagccgagaaggccgaagcctttactggggtacacagcatttcctaagcagggagtaactgattgctgggtttaaagcaagcaggcatgagttcttgggagttatgttgtattgagaggtgttcactactgcaagtctgcagtccatgtggggtgtggggatcagtgggataagtcaaacaggttgtatctaggtgctccacaggaaggtggaaaccaagaggccaaatatctggattgaccaccttgagaaactgggag
s panTro5.chr6              29334298 3691 + 175400573 atCATTGGGATTAAATTTTGGCCTGGTGTTCACTTTCTTTATATATTTATGAACAATTTAATAATGAGGTGAAATAGCCTTAAGTCTGATATATGATGCACCCACATATAAATGGAAATGGCATGCACAAAGACACTTTACTATTGGAACTGTATTGGAAAATTTATGAAATTTTAGGTAAAATTGCACCTAAAATTGTGTTACTAGTGACTGTAAGTAGCAATGCTAAATTTATTGTACTTGATGAATGAATGTATTTAGGCTAGTCATGGTTACTTTGGTTTAAATGTCTAAATAACATCTTTAGTTTTAAAAATGTGTTTGTAAT-TTGTACTATTGACAGGAGGATATTCTTGGACTGCAGCAGTTATTGGCAATGTGTGATTTGTGTTTTCTTATTTTATAGAATTATCTAATGTGATATGCTGATTTTTACAGGTAATATTTAGATATTTCTAATAATTGTATATTTGACAACCTACTAAAATGATTTGCTTTGGGAAAAAACTGaaaaacaatactcaaacataggctgcctgtaagaggctaactttaacttaaagaacacacattgactgaaaaaaatatttcatgcaagtagaaaccaaaagacagcaggggtagctctacttatattagacaaactttaagtccaaaactgtaaaaagagacagagaaagtcattacatgataaaagggtcaattcatcaaaaggatgtaacaattgtaaatatatatacacctaatactagatcatctaaatgtataaagaaagtattaatagacc-taaaaagaaacagactgcaatacagtaatagcagg-gtttttcaatacttcactttcaacaatgaacatgtcatctagacagaaatcaataaggaaacactggacttgaaatgcacattagatcaaatggacctaacagacatatatagaacattccatccaacagcaacagaatactcattcttctcaagtgcaaatgggacattatccaggatcaaatattagggaacaaaataagactccacagttttaagaagattgaaatcatatcaagtatcttttctgaccacaaagttatgaaagtagaaatgaataataggagaaaatttaaaatatttacaaacgtggaaattaaacaacatgctcctgaataaacattgggttaaataaaaaatcaaaagcaaaattaaaaaaaat---------------------------------------------cttaagacagatgaaaatgaaaacacaacataccacaacttatggcatgtagcaaaagaagatattagcaagaggaatgtttgtagtaataaatgcctatattaaaaaagaagaaagatcccaaacaa----cctaatgttacatttcaagaaaccagaaaaagagaagagcaaactaatcccaaagttagcagaaggaaggaaataacaaagatcagagcagaaataaataagaagctagaaaacaatagaatgcattcacaaaactaagacttgaatttttgaaaagataaaaacaattggcaaaacttgagtagaccaactaagaaaaaaa--gaagactctaataaagtcaaaaatgaaagaggagacattacaattgatactacagaagtacaaaagctcataaaagaatactatgaacaattttacaccaacgaatagggtaacctagaagaaatggttaaatttctagaaacataacaaaaatgaatcatgaaaaaaatagaaaatctgaacagactaataatgagtaaggaggttgaatcagtaataaaagtcttctaccaaacaaaaacccagaatatgatggattttgcattcatggtttggaagaattaatattatta--aaatatatgtactacctaaagtgatatacagattcagtgcaatttctataaaagttcaatgacttttttgtttcacagaaatataaaaagcaatttaaaaattcatatggaatgacaaaaactcctaagtagctgaagcacttttgagcaaaaagagcaaagctggaggcatcacactacctgtttcaaaatatattacacagttatagtattcaaaacagaaaggtagtggcataacaacagacacacggaccaatgtaatgtgatagagagcccagagataaactcatgcatttgtggttaattgatttttgccaaagatgccaagaatgaacacactatggagaaagggcagtatctttaataaatgatgctgggaaaatcaaatacccaaatacagaacaatgaaattgaaaccttatttcacaccatatgcaaaaatccactaaaaatggtttaaagatttaaatgtgtgaccagaaaatgtaaaattactagaagaaaacatagggaaaaatgttcttgaaattaatcttggcaataatttattggtcatgatctcaatagcacaggaaaccaaagcagaaatatacaaatgggattacctcaaaccaaaaaccttctatataacaaagtaagtaacggattgaagagacaacccatggactgggagaaaatatttacaaaccatacatggctaatatccaaaatatgtaagaaatgcaaacaacttaaatttgttagcaagaaaacaaagaaccccttttaaaactgagcaaaacacttaatggacatctttcaaaagatgacataaaagactaacagatacataacaaaatttctc------------catcaaggaaatacaaattaaaaccacaataagatatcacctcatacctgttagaatggctatatcaataaaataagagttaataagtattagcaaggatgtggagaagggaatccttatatactaatggtagtaatataaattaatacagccattattgaaatcagcatggaggttcctcaaaa-aaagatagaattaccatatgacccagcaactatatttctgagtacatagccaaagagattgaaattaatatgttaaaaaTAtattggtagattttcctctaatttggtcttaacgtctctctttgaagaggagccagaaactctagccctgctctgatgggctccagtggaggtggttgtggttgtggatgttttcagtgtttttttcgtggaatacttctatatcctgatggagagctaatgcctaattgtcctatttatgaccaggtgtccctctcactggaaactcattttcacgggcagacacccttgtggctcttgtctgactagtgtgtccagttcattcctaccaagataaccactctttaagagagccttgtccagaaaagaagttaatttcacgtatgtcagtcacgcgagacgcaagt---aaaaaaaaacacgtaatagaagtagttttattacttaaagatcca-gagagaagaaggaaactttcctcacaggcctaacgggagaaggggcagccctcagagacatgcatgctcaaccagtgggtgggtagcaagagagagtgagtgacagccaagaaggccaaagcctttactggggtacacagcatttcctaagcaaggagtaactgattgctgggtttagagcaagcaggcatgagttcttgggagttatgttgtattgaggggtgttcactactgcaagtctgcagtccatgtggggtgtggggatcagtgggataagtcaaacaggttgtatctaggtgctccacaggaaggtggaaaccaagaggccaaatatctggattgaccaccttgagaaactgggag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29580051 3689 + 173848474 atCATTGGGATTAAATTTTGGCCTGGTGTTCACTTTCTTTATATATTTATGAACAATTTAATAATGAGGTGAAATAGCCTTAAGTCTGATATATGATGCACCCACATATAAATGGAAATGGCATGCACAAAGACACTTTACTATTGGAACTGTATTGGAAAATTTATGAAATTTTAGGTAAAATTGCACCTAAAATTGTGTTACTAGTGACTGTAAGTAGCAATGCTAAATTTATTGTACTTGATGAATGAATGTATTTAGGCTAGTCATGGTTACTTTGGTTTAAATGTCTAAATAACATCTTTAGTTTTTAAAATGTGTTTGTAAT-TTGTACTATTGACAGGAGGATATTCTTGGACTGCAGCAGTTATTGGCAATGTGTGATTTGTGTTTTCTTATTTTATAGAATTATCTAATGTGATATGCTGATTTTTACAGGTAATATTTAGATATTTCTAATAATTGTATATTTGACAACCTACTAAAATGATTTGCTTTGGGAAAAAACTGaaaaacaatactcaaacataggctgcctgtaagaggctaactttaacttaaagaacacacattgactgaaaaaaatatttcatgcaagtagaaaccaaaagacagcaggggtagctctacttatattagacaaactttaagtccaaaactgtaaaaagagacagagaaagtcattacatgataaaagggtcaattcatcaaaaggatgtaacaattgtaaatatatatacacctaatactagatcatctaaatgtataaagaaagtattaatagacc-taaaaagaaacagactgcaatacagtaatagcagg-gtttttcaatacttcactttcaacaatgaacatgtcatctagacagaaatcaataaggaaacactggacttgaaatgcacattagatcaaatggacctaacagacatatatagaacattccatccaacagcaacagaatactcattcttctcaagtgcaaatgggacattatccaggatcaaatattagggaacaaaataagactccacagttttaagaagattgaaatcatatcaagtatcttttctgaccacaaagttatgaaagtagaaatgaataataggagaaaatttaaaatatttacaaacgtggaaattaaacaacatgctcctgaataaacattgggttaaataaaaaatcaaaagcaaaatt-aaaaaatt---------------------------------------------cttaagacagatgaaaatgaaaacacaacataccacaacttatggcatgtagcaaaagaagatattagcaagaggaatgtttgtagtaataaatgcctatattaaaaaagaagaaagatcccaaacaa----cctaatgttacatttcaagaaaccagaaaaagagaagagcaaactaatcccaaagttagcagaaggaaggaaataacaaagatcagagcagaaataaataagaagctagaaaacaatagaatgcattcacaaaactaagacttgaatttttgaaaagataaaaacaattggcaaaacttgagtagaccaactaagaaaaaaa--gaagactctaataaagtcaaaaatgaaagaggagacattacaattgatactacagaagtacaaaagctcataaaagaatactatgaacaattttacaccaacgaatagggtaacctagaataaatggttaaatttctagaaacataacaaaaatgaatcatgaaaaaaatagaaaatctgaacagactaataatgagtaaggaggttgaatcagtaataaaagtcttctaccaaacaaaaacccagaatatgatggattttgcattcatggtttggaagaattaatattatta--aaatatatgtactacctaaagtgatatacagattcagtgcaatttctataaaagttcaatgacttttttgtttcacagaaatagaaaaagcaatttaaaaattcatatggaatgacaaaaactcctaagtagctgaagcacttttgagcaaaaagagcaaagctggaggcatcacactacctgtttcaaaatatattacacagttatagtattcaaaacagaaaggtagtggcataacaacagacacacggaccaatgtaatgtgatagagagcccagagataaactcatgcatttgtggttaattgatttttgccaaagatgccaagaatgaacacactatggagaaagggcagtatctttaataaatgatgctgggaaaatcaaatacccaaatacagaacaatgaaattgaaaccttatttcacaccatatgcaaaaatccactaaaaatggtttaaagatttaaatgtgtgaccagaaaatgtaaaattactagaagaaaacatagggaaaaatgttcttgaaattcatcttggcaataatttcttggtgatgatctcaatagcacaggaaaccaaagcagaaatatacaaatgggattacctcaaaccaaaaaccttctatataacaaagtaagtaacggattgaagagacaacccatggactgggagaaaatatttacaaaccatacatggctaatatccaaaatatgtaagaaatgcaaacaacttaaatttgttagcaagaaaacaaagaaccccttttaaaacttagcaaaacacttaatggacatctttcaaaagatgacataaaagactaacagatacataacaaaatttctc------------catcaaggaaatacaaattaaaaccacaataagatatcacctcatacctgttagaatggctatatcaataaaataagagttaataagtattagcaaggatgtggagaagggaatccttatatactaatggtagtaatataaattaatacagccattattgaaatcagcatggaggttcctcaaaa-aaagatagaattaccatatgatccagcaactatatttctgagtacatagccaaagagattgaaattaatatgttaaaaaTAtattggtagattttcctctaatttggtcttaacgtctctcttcgaagaggagccagaaactctagccctgctctgatgggctccagtggaggtggttgtggttgtggatgttttcagtgtttttttcgtggaatacttctatatcctgatggagagctaatgcctaattgtcctatttatgaccaggtgtccctctcactggaaactcattttcactggcagacacccttgtggctcttgtctgactagtgtgtccagttcattcctaccaagataaccactctttaagagagccttgtccagaaaagaagttaatttcacgtatgtcagtcacgcgagacgcaagt----aaaaaaaacacgtaatagaagtagttttattacttaaagatcca-gagagaagaaggaaactttcctcacaggcctaacgggagaaggggcagccctcagagacatgcatgctcaaccagtgggtgggtagcaagagagagtgagtgacagccgagaaggccaaagcctttactggggtacacagcatttcctaagcaaggagtaacggattgctgggtttagagcaagcaggcatgagttcttgggagttatgttgtattgagaggtgttcactactgcaagtctgcagtccatgtgggatgtggggatcagtgggataagtcaaacaggttgtatctaggtgctccacaggaaggtggaaaccaagaggccaaatatctggattgaccaccttgagaaactgggag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5377672 3695 +   6154872 ATCATTGGGATTAAATTTTGGCCTGGTGTTCACTTTCTTTATATATTTATGAACAATTTAATAATGAGGTGAAATAGCCTTAAGTCTGATATATGATGCACCCACATATAAATGGAAATGGCATGCACAAAGACACTTTACTATTGGAACTGTATTGGAAAATTTATGAAATTTTAGGTAAAATTGCACCTAAAATTGTGTTATTAGTGACTGTAAGTAGCAATGCTAAATTTATTGTACTTGATGAATGAATGTATTTAGGCTAGTCATGGTTACTTTGGTTTAAATGTCTAAATAACATCTTTAGTTTTAAAAATGTGTTTGTAAT-TTGTACTATTGACAGGAGGATATTCTTGGACTGCAGCGGTTATTGGCAATGTGTGATTTGTGTTTTCTTATTTTATAGAATTATCTAATGTAATATGCTGATTTTTACAGGTAATATTTAGATATTTCTAATAATTGTATATTTGACAACCTACGAAAATGATTTGCTTTGGGAAAAAACTGaaaaacaatactcaaacataggctgcctgtaagaggctaactttaacttaaagaacacacattgactgaaaaaagtatttcatgcaagtagaaaccaaaagacagcaggggtagctctacttatattagacaaactttaagtccaaaactgtaaaaagagacagagaaagtcattacatgataaaagggtcaattcatcaaaaggacgtaacaattgtaaatatatatacacctaatactagatcatctaaatgtataaagaaactattaatagacc-taaaaagaaacagactgcaatacagtaatagcagg-gtttttcaatacttcactttcaacaatgaacatgtcatctagacagaaatcaataaggaaacactggacttgaaacgcacattagatcaaatggacctaacagacatatatagaacattccatccaacagcaacagaatactcattcttctcaagtgcaaatgggacattatccaggatcaaatattagggaacaaaataagactccacagttttaagaagattgaaatcatatcaagtatcttttctgaccacaaagttatgaaagtagaaatgaataataggagaaaatttaaaatatttacaaacgtggaaattaaacaacatgctcctgaataaacaatgggttaaataaaaaatcaaaagcaaaattaaaaaaaat---------------------------------------------cttaagacagatgaaaatgaaaacacaacataccacaacttatggcatgtagcaaaagaagatattagcaagaggaatgtttgtagtaataaatgcctatattaaaaaagaagaaagatcccaaacaa----cctaatgttacatttcaagaaaccagaaaaagagaagagcaaactaatcccaaagttagcagaaggaaggaaataacaaagatcagagcagaaataaataagaagctagaaaacaatagaatgcattcacaaaactaagacttgaatttttgaaaagataaaaacaattggcagaacttgagtagaccaactaagaaaaaaa--gaagactctaataaagtcaaaaatgaaagaggagacattacaattgatactacagaagtacaaaagctcataaaagaatactatgaacaattttacaccaacgaatagggtaacctagaagaaatggttaaatttctagaaacataacaaaaatgaatcatgaaaaaaatagaaaatctgaacagattaataatgagtaaggaggttgaatcagtaataaaagtcttctaccaaacaaaaacccagaatatgatggattttgcattcatggtttggaagaattaatattatta--aaatatatgtactacctaaagtgatatgcagattcagtgcaatttctataaaagttcaatgacttttttgtttcacagaaatagaaaaagcaatttaaaaattcatatggaatgacaaaaacccctaagtagctgaagcacttttgagcaaaaagagcaaagctggaggcatcacactacctgtttcaaaatatattacacagttatagtattcaaaacagaaaggtagtggcataacaacagacacacggaccaatgtaatgtgatagacagcccagagataaactcatgcatttgtggttaattgatttttgccaaagatgccaagaatgaacacactatggagaaagggcagtatctttaataaatgatgctgggaaaatcaaatacccaaatacagaacaatgaaattgaaaccttatttcacaccatatgcaaaaatccactaaaaatggtttaaagatttaaatgtgtgaccagaaaatgtaaaattactagaagaaaacatagggaaaaatgttcttgaaattaatcttggcaataatttattggtgatgatctcaatagcacaggaaaccaaagcagaaatagacaaatgggattacctcaaaccaaaaaccttctatataacaaagtaaataacggattgaagagacaacccatggactgggagaaaatatttacaaaccatacatggctaatatccaaaatatgtaagaaatgcaaacaacttaaatttgttagcaagaaaacaaagaaccccttttaaaactgagcaaaacactt-atggacatctttcaaaagatgacataaaagactaacagatacataacaaaatttctcaa----------catcaaggaaatacaaattaaaaccacaataagataccacctcatacctgttagaatggctatatcaataaaataagagttaataagtattagcaaggatgtggagaagggaatccttatatactaatggtagtaatgtaaattaatacagccattattgaaatcagcatggaggttcctcaaaa-aaagatagaattaccatatgatccagcaactatatttctgagtacatagccaaagagattgaaattaatatgttaaaaaTAtattggtagattttcctctaatttggtcttaacgtctctctttgaagaggagccagaaactctagccctgctctgatgggctccagtggaggtggttgtggttgtggatgttttcagtgtttttttcatggaatacttctatatcctgatggagagctaatgcctaattgtcctatttatgaccaggtgtccctctcactggaaactcattttcactggcagacacccttgtggctcttgtctgactagtgtgtccagttcattcctaccaagataaccactctttaagagagccttgtccagaaaagaagttaatttcacgtatgtcagtcacgcgagacacaagtaaaaaaaaaaaacacgtaatagaagtagttttattacttaaagatcca-gagagaaggaggaaactttcctcacaggcctaacgggagaaggggcagccctcagagacatgcatgctcaaccagtgggtgggtagcaagagatagtgagtgacagccgagaaggccgaagcctttactggggtatacagcatttcctaagcagggagtaactgattgctgggtttagagcaagcaggcatgagttcttgggagttatgttgtattgagaggtgttcactactgcaagtctgcagtccatgtggggtgtggggatcagtgggataagtcaaacaggttgtatctaggtgctccacaggaaggtggaaaccaagaggccaaatatctggattgaccaccttgagaaactgggag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29540344 3661 + 172585720 ATCATTGGGATTAAATTTTGGCCTGGTGTTCACTTTCTATATATGTCTATGAACAATTTAATAATGAGGTGAAATAGCCTTAAGTCTGATATATGATGCACCCACATAAAAATGGAAATGGCATGCACAAAGACACTTTACTTTCAGAACTATATTGGAAAATTTATGGAATTTTAGGTAAAATTGCACCTAAAATTGTGTTATTAGTGACTGTAAGTAGCAATGCTAAATTTATTGTACTTGATGAATGAATGTATTTAGGCTAGTCATGGTTACTTTGGTTTAAATGTCTAAATAACATCTTTAGTTTTAAAAATGTGTTTGTAAT-TTGTACTATTGAC--GGGGATATTCTTGGACTGCAGTGGTTGTTGGCAATGTGTGATTTGTGTTTTCTTATTTTACAGAATTATCTAATGTGATATACTAATTTTTACAGGTAATATTTATATATTTCTAATAATTGTATATTTGACAACCTACTAAAATGATTTGCTTTGGAAAAAAACTGaaaaacaatactcaaacat-ggctgcctgtgagaggctaacttcaacttgaagaacacacattgattgaaaaaaatatttcatgcaagtagaaactaaaagacagcagggatagctctgcttatattagacaaacttaaagtccaaaactatgaaaagagacaaagaaagtcattacatgatcaaagggtgaattcatcaaaaggacataacaattgtaaatatatatgcacctaataccagatcatctaaatgtataaagaaagttttagtagacg-tgaaaagaatcagactgcaatacaataatagcaggagtttttcaatacttcactttcaacgatgaacatatcatctagacagatatcaataaggaaacactggacttgaaatgtgcattagaccaaatggacctaacagacatacatagaacattccatccaacagcaggagaatactcattcttctcaagtgcaaatgggacattatccaggatcaaatattagggaacaaaataagactccatagttttaagaagattgaaatcatatcaagtatcttttctgaccacaaaggtatgaaagtagaaatgaataataggagaaaatttgaaatatttacaaacatggaaattaaacaacatgctcctgaataaacaatgggttaaagaaaaaatcaaaatagaagttaaaaaatat---------------------------------------------cttaagacagatcaaaatgaaaacacaacataccacaacttacggggtgtagcaaaagaaggtattagcaagaggaatgtttatagtaataaatgcctatattaaaaaagaagaaagatcccaaacaaacagcctaatgttacatttcaagaaactagaaaaagagaagagcaaactaatcccaaagttagcagaaggaaggatataacaaagatcagagcagaaataaataagagactagaaaacaatagaacacattcacaaaatgaagacttgaatttttgaaaagataaaaacgattgacaaaaatttagtagaccaactaagaaaaaaaaagaagactctaataaagtcagaaatgaaagaggagacattaaaattgaaactacagaagtacaaaagatcataaaagaatactatgaacaattttacaccaacaaatagggtaacctagaagaaatggttagatttctagaaacataacaagaatgaatcacg-aaaaaatagaaaatctgaacagac---taatgagtaaggaggttgaatcagtaataaaagtctcctaccaaagtaaagcccagaatatgatggatcttgtgttcatggtttggaataattaatattatta--atatgtatatactacctaaagtgatacacatagtcagtgcaatttctttaaaagttcaatgacttttttgtttcacagcaatagaaaaagcaatttaaaaattcgtatggaatgacaaaaaccccaaagtagctgaagcacttttgagcaaaaagaacaaagctggaggcatcacactacctgattcaaaatatattacaaagttatagtattcaaaacagaaaggtactggcataacaacagac-----------------------------------ataaactcatgcatttgtggttaattgagttttgccaaagatgccaagaataaacacattatggagaaagggcagtatctttaatgaatgatgctgggaaaatcaaatacccaaatacagaacaatgaaattgaaaccttatttcacaccatatgcaaaaatccactaaaaatggtttaaagatttaattgcatgacctgaaaatgtaaaactactagaagaaaatataagaaaaaatgtccttgaaattaatcatggcaataatttattggtgatgatctcaatagcacaggaaaccaaagcagaaatagacaaatgggattacctcaaaccaaaaagcttctgtataacaaagtaaacaacagattgaagagacaacccatggactgggagaaaatatttacaaaccatacatggttaatattcaaaatatgtaagaaatgcaaac-----aaatttgttagcaagaaagcaaagaaccccatttaaaactgagcaaaaga-ttaacggacatttttcaaaagatggcataaaagattaacagatgtataaaaaaattcctcaacatcactgatcatcaaggaaatgcaaattagaaccacaatgagatatcacttcatacctgttagaatggctacatcagtaaaataagaggtaataagtattggcaaggatgtggagaagggaattcttatatactgttggtaggaatgtaaattaatacagccattattgaaatcaggatggagattcctcaaaacaaagatagaattaccatacgatccagcaactatatttctgggtacatagccagagagactgaaattagaatgttaaaaaTAtattggtagattttcctttaatttggtcttaatgcctctctttgaagagtggctagaacctctagccctgctctgatgggctccagtggaggtggttgtggttgtggatgttttcagtgttgttttcatggaataattctatatcctgatggagagctaatgcctaattgtcctatttatgaccaggtttccc-ctcactggaaacttgttttcactggcagacacccttgtggctcttgtctgactagtgtgtccagttcattcctaccaagatcaccactctctaagagagccttgtccacaaaagaagttagtttcagttgtgtcagtcaggtgagaggcaact----aaacaaaacatgtaatagaagtagttttattacttaaagatcca-gagagaagagggcaactttcctcacaggtctaatgggagaaggggcaggccgcagagacatgcatgctcaaccagtgggtgggtagcaagagagagtgagtgacagccgagaaagccaaagcctttactggagtacacagcattactcaagcagggagtaactgattggtgggtttagagcaagcaggcccgagttcttgggagtcatgttgtattgagaggtgttcactgccgcaaatctgcagtccatgtggggtgtggggatcagtggggtaagtcaagcaggttgtatccaggtgtcccatagggaggtggaaaccaagaggtcaaatacctggattgaccaccttgagaaactgggag
i rheMac8.chr4             I 1043 C 0
s macFas5.chr4              29201460 3661 - 170955103 ATCATTGGGATTAAATTTTGGCCTGGTGTTCACTTTCTATATATGTCTATGAACAATTTAATAATGAGGTGAAATAGCCTTAAGTCTGATATATGATGCACCCACATAAAAATGGAAATGGCATGCACAAAGACACTTTACTTTCAGAACTATATTGGAAAATTTATGGAATTTTAGGTAAAATTGCACCTAAAATTGTGTTATTAGTGACTGTAAGTAGCAATGCTAAATTTATTGTACTTGATGAATGAATGTATTTAGGCTAGTCATGGTTACTTTGGTTTAAATGTCTAAATAACATCTTTAGTTTTAAAAATGTGTTTGTAAT-TTGTACTATTGAC--GGGGATATTCTTGGACTGCAGTGGTTGTTGGCAATGTGTGATTTGTGTTTTCTTATTTTACAGAATTATCTAATGTGATATACTAATTTTTACAGGTAATATTTATATATTTCTAATAATTGTATATTTGACAACCTACTAAAATGATTTGCTTTGGAAAAAAACTGaaaaacaatactcaaacat-ggctgcctgtgagaggctaacttcaacttgaagaacacacattgattgaaaaaaatatttcatgcaagtagaaactaaaagacagcagggatagctctgcttatattagacaaacttaaagtccaaaactatgaaaagagacaaagaaagtcattacatgatcaaagggtgaattcatcaaaaggacataacaattgtaaatatatatgcacctaataccagatcatctaaatgtataaagaaagttttagtagacg-tgaaaagaatcagactgcaatacaataatagcaggagtttttcaatacttcactttcaacgatgaacatatcatctagacagatatcaataaggaaacactggacttgaaatgtgcattagaccaaatggacctaacagacatacatagaacattccatccaacagcaggagaatactcattcttctcaagtgcaaatgggacattatccaggatcaaatattagggaacaaaataagactccatagttttaagaagattgaaatcatatcaagtatcttttctgaccacaaaggtatgaaagtagaaatgaataataggagaaaatttgaaatatttacaaacatggaaattaaacaacatgctcctgaataaacaatgggttaaagaaaaaatcaaaatagaagttaaaaaatat---------------------------------------------cttaagacagatcaaaatgaaaacacaacataccacaacttacggggtgtagcaaaagaaggtattagcaagaggaatgtttatagtaataaatgcctatattaaaaaagaagaaagatcccaaacaaacagcctaatgttacatttcaagaaactagaaaaagagaagagcaaactaatcccaaagttagcagaaggaaggatataacaaagatcagagcagaaataaataagagactagaaaacaatagaacacattcacaaaatgaagacttgaatttttgaaaagataaaaacgattgacaaaaatttagtagaccaactaagaaaaaaaaagaagactctaataaagtcagaaatgaaagaggagacattaaaattgaaactacagaagtacaaaagatcataaaagaatactatgaacaattttacaccaacaaatagggtaacctagaagaaatggttagatttctagaaacataacaagaatgaatcacg-aaaaaatagaaaatctgaacagac---taatgagtaaggaggttgaatcagtaataaaagtctcctaccaaagtaaagcccagaatatgatggatcttgtgttcatggtttggaataattaatattatta--atatgtatatactacctaaagtgatacacatagtcagtgcaatttctttaaaagttcaatgacttttttgtttcacagcaatagaaaaagcaatttaaaaattcgtatggaatgacaaaaaccccaaagtagctgaagcacttttgagcaaaaagaacaaagctggaggcatcacactacctgattcaaaatatattacaaagttatagtattcaaaacagaaaggtactggcataacaacagac-----------------------------------ataaactcatgcatttgtggttaattgagttttgccaaagatgccaagaataaacacattatggagaaagggcagtatctttaatgaatgatgctgggaaaatcaaatacccaaatacagaacaatgaaattgaaaccttatttcacaccatatgcaaaaatccactaagaatggtttaaagatttaattgcgtgacctgaaaatgtaaaactactagaagaaaatataagaaaaaatgtccttgaaattaatcatggcaataatttattggtgatgatctcaatagcacaggaaaccaaagcagaaatagacaaatgggattacctcaaaccaaaaagcttctgtataacaaagtaaacaacagattgaagagacaacccatggactgggagaaaatatttacaaaccatacatggttaatattcaaaatatgtaagaaatgcaaac-----aaatttgttagcaagaaagcaaagaaccccatttaaaactgagcaaaaga-ttaacggacatttttcaaaagatggcataaaagattaacagatgtataaaaaaattcctcaacatcactgatcatcaaggaaatgcaaattagaaccacaatgagatatcacttcatacctgttagaatggctacatcagtaaaataagaggtaataagtattggcaaggatgtggagaagggaatccttatatactaatggtaggaatgtaaattaatacagccattattgaaatcaggatggagattcctcaaaacaaagatagaattaccatacgatccagcaactatatttctgggtacatagccagagagactgaaattagaatgttaaaaaTAtattggtagattttcctttaatttggtcttaatgcctctctttgaagagtggctagaacctctagccctgctctgatgggctccagtggaggtggttgtggttgtggatgttttcagtgttgttttcatggaataattctatatcctgatggagagctaatgcctaattgtcctatttatgaccaggtttccc-ctcactggaaacttgttttcactggcagacacccttgtggctcttgtctgactagtgtgtccagttcattcctaccaagatcaccactctctaagagagccttgtccacaaaagaagttagtttcagttgtgtcagtcaggtgagaggcaact----aaacaaaacatgtaatagaagtagttttattacttaaagatcca-gagagaagagggcaactttcctcacaggtctaatgggagaaggggcaggccgcagagacatgcatgctcaaccagtgggtgggtagcaagagagagtgagtgacagccgagaaagccaaagcctttactggagtacacagcattactcaagcagggagtaactgattggtgggtttagagcaagcaggcccgagttcttgggagtcatgttgtattgagaggtgttcactgccgcaaatctgcagtccatgtggggtgtggggatcagtggggtaagtcaagcaggttgtatccaggtgtcccatagggaggtggaaaccaagaggtcaaatacctggattgaccaccttgagaaactgggag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2209132 3667 -   2996164 ATCATTGGGATTAAATTTTGGCCTGGTGTTCACTTTCTATATATGTCTATGAACAATTTAATAATGAGGTGAAATAGCCTTAAGTCTGATATATGATGCACCCACATAAAAATGGAAATGGCATGCACAAAGACACTTTACTTTCAGAACTATATTGGAAAATTTATGGAATTTTAGGTAAAATTGCACCTAAAATTGTGTTATTAGTGACTGTAAGTAGCAATGCTAAATTTATTGTACTTGATGAATGAATGTATTTAGGCTGGTCATGGTTACTTTGGTTTAAATGTCTAAATAACATCTTTAGTTTTAAAAATGTGTTTGTAAT-TTGTACTATTGAC--GGGGATATTCTTGGACTGCAGTGGTTGTTGGCAATGTGTGATTTGTGTTTTCTTATTTTACAGAATTATCTAATGTGATATACTAATTTTTACAGGTAATATTTATATATTTCTAATAATTGTATATTTGACAACCTACTAAAATGATTTGCTTTGGAAAAAAACTGaaaaacaatactcaaacat-ggctgcctgtgagaggctaacttcaacttgaagaacacacattgattgaaaaaaatatttcatgcaagtagaaactaaaagacagcagggatagctctgcttatattagacaaacttaaagtccaaaactatgaaaagagacaaagaaagtcattacatgatcaaagggtgaattcatcaaaaggacataacaattgtaaatatatatgcacctaataccggatcatctaaatgtataaagaaagttttagtagacgttgaaaagaatcagactgcaatacaataatagcaggagtttttcaatacttcactttcaacgatgaacatatcatctagacagatatcaataaggaaacactggacttgaaatgtgcattagaccaaatggacctaacagacatacatagaacattccatccaacagcaggagaatactcattcttctcaagtgcaaatgggacattatccaggatcaaatattagggaacaaaataagactccatagttttaagaagattgaaatcatatcaagtatcttttctgaccacaaaggtatgaaagtagaaatgaataataggagaaaatttgaaatatttacaaacatggaaattaaacaacatgctcctgaataaacaatgggttaaagaaaaaatcaaaatagaagttaaaaaatat---------------------------------------------cttaagacagatcaaaatgaaaacacaacataccacaacttacggggtgtagcaaaagaaggtattagcaagaggaatgtttatagtaataaatgcctatattaaaaaagaagaaagatctcaaacaaacagcctaatgttacatttcaagaaactagaaaaagagaagagcaaactaatcccaaagttagcagaaggaaggatataacaaagatcagagcagaaataaataagagactagaaaacaatagaacacattcacaaaatgaagacttgaatttttgaaaagataaaaacgattgacaaaaatttagtagaccaactaagaaaaaaaaagaagactctaataaagtcagaaatgaaagaggagacattaaaattgaaactacagaagtacaaaagatcataaaagaatactatgaacaattttacaccaacaaatagggtaacctagaagaaatggttagatttctagaaacataacaagaatgaatcacg-aaaaaatagaaaatctgaacagac---taatgagtaaggaggttgaatcagtcataaaagtctcctaccaaagtaaagcccagaatatgatggatcttgtgttcatggtttggaagaattaatattatta--atatgtatatactacctaaagtgatacacatagtcagtgcaatttctttaaaagttcaatgacttttttgtttcacagcaatagaaaaagcaatttaaaaattcgtatggaatgacaaaaaccccaaagtagctgaagcacttttgagcaaaaagaacaaagctggaggcatcacactacctgattcaaaatatattacaaagttatagtattcaaaacagaaaggtactggcataacaacagac-----------------------------------ataaactcatgcatttgtggttaattgagttttgccaaagatgacaagaataaacacattatggagaaagggcagtatctttaatgaatgatgctgggaaaatcaaatacccaaatacagaacaatgaaattgaaaccttatttcacaccatatgcaaaaatccactaaaaatagtttaaagatttaattgcgtgacctgaaaatgtaaaactactagaagaaaatataggaaaaaatgtccttgaaattaatcatggcaataatttattggtgatgatctcaatagcacaggaaaccaaagcagaaatagacaaatgggattacctcaaaccaaaaagcttctgtataacaaagtaaacaacagattgaagagacaacccgtggactgggagaaaatatttacaaaccatacatggttaatattcaaaatatgtaagaaatgcaaacaacttaaatttgttagcaagaaagcaaagaaccccatttaaaactgagcaaaaga-ttaacggacatttttcaaaagatggcataaaagattaacagatgtataaaaaaattcctcaacatcactgatcatcaaggaaatgcaaattagaaccacaatgagatatcacttcatacctgttagaatggctacatcagtaaaataagaggtaataagtattggcaaggatgtggagaagggaatccttatatactaatggtaggaatgtaaattaatacagccattattgaaatcaggatggagattcctcaaaacaaagatagaattaccatacgatccagcaactatatttctgggtacatagccagagagactgaaattagaatgttaaaaaTAtattggtagattttcctttaatttggtcttaatgcctctctttgaagagtggctagaacctctagccctgctctgatgggctccagtggaggtggttgtggttgtggatgttttcagtgttgttttcatggaataattctatatcctgatggagagctaatgcctaattgtcctatttatgaccaggtttccc-ctcactggaaacttgttttcactggcagacacccttgtggctcttgtctgactagtgtgtccagttcattcctaccaagatcaccactctctaagagagccttgtccacaaaagaagttagtttcagttgtgtcagtcaggtgagaggcaagt----aaacaaaacatgtaatagaagtagttttattacttaaagatcta-gagagaagagggcaactttcctcacaggtctaatgggagaaggggcaggccgcagagacatgcatgctcaaccagtgggtgggtagcaagagagagtgagtgacagccgagaaagccaaagcctttactggagtacacagcattactcaagcagggagtaactgattggtgggtttagagcaagcaggcccgagttcttgggagacatgttgtattgagaggtgttcactgccgcaaatctgcagtccatgtgggatgtggggatcagtggggtaagtcaagcaggttgtatccaggtgtcccatagggaggtggaaaccaagaggtcaaatacctggattgaccaccttgagaaactgggag
i macNem1.NW_012011356v1   I 1093 C 0
s cerAty1.NW_012001495v1     2074727 3658 -   2157725 ATCATTGGGATTAAATTTTGGCCTGGTGTTCACTTTCTATATATGGCTATGAACAATTTAATAATGAGGTGAAATAGCCTTAAGTCTGATATATGATGTACCCACATAAAAATGGAAATGGCATGCACAAAGACACTTTACTTTCAGAACTATATTGGAAAATTTATGGAATTTTAGGTAAAATTGCACCTAAAATTGTGTTATTAGTGACTGTAAGTAGCAATGCTAAATTTATTGTACTTGATGAATGAATGTATTTAGGCTAGTCATGGTTACTTTGGTTTAAATGTCTAAATAACATCTTTAGTTTTAAAAATGTGTTTGTAAT-TTGTACTATTGAC--GGGGATAATCTTGAACTGCATCGGTTGTTGGCAATGTGTGATTTGTGTTTTCGTATTTTACAGAATTATCTAATGTGATATACTAATTTTTACAGGTAATTTTTATATATTTCTAATAATTGTATATTTGACAACCTACTAAAATGCTTTGCATTGGAAAGAAACTGaaaaacaatacgcagatgcaggctgcctatgagaggctcactttaacttgaagaacacacattgattgaaaaaaatatttcatgcaagtagaaaccaaaagacagcagggatagctctgcttatattagacaaactttaagtccaaaactataaaaagagacaaagaaagtcattacatgatcaaagggtgaattcatcaaaaggacataacaattgtaaatatatatgcacctaataccagatcatctaaatgtacaaagaaagtattagtagaca-tgaaaagaattagactgcaatacaataatagcaggagtttttcaatacttcactttcaacgatgaacatgtcatctagacagatatcaataaggaaacactggacttgaaatgtgcattagaccaaatggacctaacagacatacatagaacattccatccaacagcagcagaatactcattcttctcaagtgcaaatgggatattatccaggatcaaatattagggaacaaaataagactccatagttttaagaagattgaaatcatatcaagtatcttttctgaccacaaaggtatgaaagtataaatgaataataggaaaaaatttgaaatatttacacacgtggaaattaaatgacatgctcctgaataaacaatgggttaaagaaaaaatcaaaatagaaatcaaaaaatat---------------------------------------------cttaagacagatgaaaatgaaaatacaacataccacaacttaccgggtgtaacaaaagaaggtattagcaagaggaatgtttatagtaataaatgtctatattaaaaaagaagaaagatcccaaacaaacagcctaatgttacatttcaagaaactagaaaaagagaagagcaaacgaatcccaaagttagcagaaggaaggaaataacaaagatcagagcagaaatgaataagagactagaaaacaatagaacacattcacaaaacaaagacttcaatttttgaaaagataaaaacaattgacaaaactttagtagaccaattaag-aaaaaaaagaagactctaataaagtcagaaatgaaagaggagacattaaaattgaaactacagaagtacaaaagatcataaaacaatactatgaacaattttacaccaacaaatagggtaacctagaagaaatggttagatttctagaaacataac---aatgaatcatg-aaaaaatagaaaatctgaacagactaataatgagtaaggaggttaaatcagtaataaaagtctcctaccaaagaaaatcccagaatatgatggatcttatgttcatagtttggaagaattaatatt------atgtatatatactacttaaagtgatacacatattcagtgcaatttctataaaagttcaatgacttctttgtttcacagcaatagaaaaagcaattaaaaaatttgtagggaatgacaaaaaccccaaagtagctgaagcacttttgagcaaaaagaacaaagctggaggcatcacactacctgattcaaaatatattacaaagttatagtattcaaaacagaaaggtactggcataacaacagac-------------------------------------agactcatgcatttgtggctaattgatttttgccaaagatgccaagaataaacacattatggagaaagggcagtatcttaaatgaatgatgctgggaaaatcatatacccaaatacagaacaatgaaattgaaaccttatttcacaccatatgcaaaaatccactaaaaatagtttaaagatttaattgcatgacctgaaaatgtaaaactactagaagaaaacataggaaaaaatgtccttgaaattaatcatggcaataatttattgctgatgatctcaatagcacaggaaatcaaagcagaaatagacaaatgggattacctcaaacaaaaaagcttctgtataacaaagtaaacaacagattgaagagacaacccatggactgggagaaaatatttacaaaccatacatggttaatatccaaaatatgtaagaaatgcaaacaacttaaatttgttagcaagaaagcaaagaaccccatttaaaactgagcagaagg-ttaatggacatctttcaaaagatgac--aaaagattaacagatatataaaaaaatttctcaacgtcactgatcatcaaggaaatgcaaattaaaaccacaatgagatatcacttcatacctgttagaatggctatatcagtaaaataagaggtaataagtattggcaaggatgtggagaagggaatccttatatactaatggtaggaatgtaaattaatacagctattattgaaatcaggatggagattcctcaaaaaaaagatagaattaccatatgatccagcaactatatttctgggtacatagccagagagactgaaattagaatgttaaaaaTAtattggtagattttcctttaatttggtcttaatgcctctctttgaagagtggctagaacctctagccctgctctgatgggctccagcggaggtggttgtggttgtggatgttttcagtgttgttttcatggaatacttctatatcctgatgaagagctaatgcctagttgtcctgtttatgaccaggtttcac-ctcactggaaacttgttttcactggcagacacccttgtggctcttttctgactagtgtgtccagttcattcctaccaagataaccactctctaagagagccttgtccacaaaagaaattagtttcagttgtgtcagtcaggtgagaggcaagt----aaacaaaacacgtaatagaagtagtttcattacttaaagatcca-gagagaagagggcaactttcctcacaggtctaatgggagaaggggcagccctcagagacatgcatgctcaaccagtgggtgggtagcaagagacagtgagtgacagccaagaaggccaaagcctttactggggtacacagcattacccaagcagggagtaactgattggtgggtttagagcaagcaggcgtgagttcttgggagtcatgttgtattgaggggtgttcactgccgcaaatctgcagtccatgtggggtgtggggatcagtggggtaagtcaagcaggttgtatccaggtgtcccatagggaggtggaaactaagaggccaaatacctggattgaccaccttgagaaagtgggag
i cerAty1.NW_012001495v1   I 1056 C 0
s chlSab2.chr17             28504698 3635 -  71996105 ATCATTGGGATTAAATTTTGGCCTGGTGTTCACTTTCTATATATGGCTATGAACAATTTAATAATGAGGTAAAATAGCCTTAAGTCTGATATATGATGCACCCACATAAAAATGGAAATGGCATGCACAAAGACACTTTACTTTCAGAACTATATTGGAAAATTTATGGAATTTTAGCTAAAATTGCACCTATAATTGTGTTATTAGTGACTGTAAGTAGCAATGCTAAATTTATTGTACTTGATGAATGAATGTATTTAGGCTAGTCATGGTTACTTTGGTTTAAATGTGTTTGTAA----------------------TTTGTACTGTTGTACTATTGAT--GGGGATATTCTTGGACTGCAGCGGTTGTTGGCAATGTGTGATTTGTGTTTTCTTATTTTACAGAATTATCTAATGTGATATACTAATTTTTACAGGTAATATTTATATATTTCTAATAATTGTATATTTGACAACCTACTAAAATGATTTGCTTTGGAAAAAAACTGAGaaacaatactcaaacat-ggctgcctgtgagaagctaacttcaacttgaagaacacac----attgaaaaaaatatttcatgcaagtagaaactaaaagacagcagggatagctctgcttatattagacaaacttaaagtccaaaactataaaaagagacaaagaaagtcattacatgatcaaagggtgaattcatcaaaaggacataacaattgtaaatatatatgcacctaataccagatcatctaaatgtataaagaaagtattagtagacg-tgaaaagaatcagactgcaatacaataatagcaggagtttttcaatacttcactttcaacgatgaacatatcatctagacagatatcaataaggaaacactggacttgaaatgtgcattagaccaaatggacctaacagacatacatagaacattccatccaacagcagcagaatactcattcttctcaagtgcaaatgggacattatccaggatcaaatattagggaacaaaataagactctatagttttaagaagattgaaatcatatcaagtatcttttctgaccacaaaggtatgaaagtagaaatgaataataggagaaaatttgaaatatttacaaacgtggaaattaaacaacatgctcctgaataaacaatgggttaaagaaaaagtcaaaacagaaattaaaaaatat---------------------------------------------cttaagacagatgaaaatgaaaacacaacataccacaacttacggggtgtagcaaaacaaggcattagcaagaggaatgtttatagtaataaatgcctgtattaaaaaagaagaaagatcccaaacaaacagcctaatgttacatttcaagaaacaagagaaagagaagagcaaactaatcccaaagttagcagaaggaaggaaataacaaagatcagagcagaaataaataagagactagaaaacaatagaacacattcacaaaacgaagacttgaatttttgaaaagataaaaacgattgacaaaactttagtagaccaactaagaaaaaaaa-gaagactctaataaagtcagaaatgaaagaggagacattaaaatggaaacgacagaggtacaaaagataataaaagaatactatgaacaattttacaccaacaaatagggtaacctagaagaaatggttagatttctagaaacataacaagaatgaatcact-aaaaaatagaaaatctgaacagac---taatgagtaaggaggttgaatcagtaataaaagtctcctaccaaagaaaagcccagaatatgatggatcttgtgttcatgattgggaagaattaatattatta--atatgtatatactacctaaagtgatacacatagtcagtgcaatttctataaaagttcaatgacttttttgtttcacagcaatagaaaaagcaatttaaaaattcgtatggaatgacaaaaactccaaagtagctgaagcacttttgagcaaaaagaacaaagctggaggcatcacactacctgattcaaaatatattacaaagttatagtattcaaaacagaaaggtactggcataacaacagac-----------------------------------atgaactcatgcatttgtggttaactgagttttgccaaagatgccaagaataaacacattatggagaaagggcagtatctttaatgaattatgctgggaaaatcaaatacccaaatacagaacaatgaaattgaaaccttatttcacactatatgcaaaaatccactaaaaatggtttaaagatttaattgcatgacctgaaaatgtaaaactactagaagaaaacataggaaaaaatgtccttgaaattaatcatggcaataatttattggtgatgatctcaatagcacaggaaaccaaagcagaaatagacaaatgggattacctcaaaccaaaaagcttctgtataacaaagtaaacaatagattgaagagacaacccatggactgggagaaaatatttacaaaccatacatggttaatattcaaaatatgtaagaaatgcaaacaacttaaatttgttagcaagaaagcaaagaaccccatttaaaactgagcaaaaga-ttaatggacatctttcaaaagatggcataaaagattaacagatatataaaaaaattcctcaacatcactgatcatcaaggaaatgcaaattagaaccacaatgaaatatcacttcatacctgttagaatggctatatcaataaaataagaggtaataagtattggcaaggatgtggagaagggaatccttatatactaatggtaggaaagtaaattaatacagctattattgaaatcaggatggagattcctcaaaaaa-----agaattaccatatgatccaggaactatatttctgggtacatagccagagagactgaaattagaatgttaaaaaTAtattggtagattttcctttaatttggtcttaaagtctgtctttgaagagtggctagaacctctagccctgctctgaggggctccagtggagttggttgtggttgtggatgttttcagtgttgtttttatggaatacttctatatcctgatggagagctaatgcctaattgtcctatttatgaccaggtttccc-ctcactggaaacttgttttcactggcagacacccttgtggctcttgtctgactagtgtgtccagttcattcctaccaagataaccactctctaagagagccttgtccacaaaagaagttagtttcagttgtgtcagtcaggtgagatgcaagt----aaacaaaacacgtaatagaagtagttttattacttaaagatcca-gagagaagagggcaactttcctcacaggtctaatgggagaaggggtagccctcggagacatgcatgctcaaccagtgggtgggtagcaagagacagtgagtgacagccgagaaggccaaagcctttactgggttacacagcattactcaagcagggagtaactgattggtgggtttagagcaagcaggcccgagttcttgggagttatgttgtattgagaggtgttcaccgccacgaatctgcggtccatgtggggtgtggggatcagtggggtaagtcaagcaggttgtatccaggtgtcccatagggaggtggaaaccaagaggccaaatacctggactgaccaccttgagaaagtgggag
i chlSab2.chr17            I 1039 C 0
s manLeu1.NW_012104165v1     2217932 3662 +   2316924 ATCATTGGGATTAAATTTTGGCCTAGTGTTCACTTTCTATATATGTCTATGAACAATTTAATAATGAGGTGAAATAGCCTTAAGTCTGATATATGATGCACCCACATAAAAATGGAAATGGCATGCACAAAGACACTTTACTTTCAGAACTATATTGGAAAATTTATGGAATTTTAGGTAAAATTGCACCTAAAATTGTGTTATTAGTGACTATAAGTAGCAATGCTAAATTTATTGTACTTGATGAATGAATGTATTTAGGCTAGTCATGGTTACTTTGGTTTAAATGTCTAAATAACATCTTTAGTTTTAAAAATGTGTTTGTAAT-TTGTACTATTGAC--GGGGATAATCTTGGACTGCAGCGGTTGTTGGCAATGTGTGATTTGTGTTTTCTTATTTTACAGAATTATCTAATGTGATATACTAATTTTTACAGGTAATATTTATATATTTCTAATAATTGTATATTTGACAACCTACTAAAATGATTTGCTTTGGAAAAAAACTGaaaaacaatactcaaacat-ggatgcctgtgagaggctaacttcaacttgaagaacacacattgattgaaaaaaatatttcatgcaagtagaaactaaaagacagcagggatagctctgcttatattagacaaacttaaagtccaaaactatgaaaagagacaaagaaagtcattacatgatcaaagggtgaattcatcaaaaggacataacaattgtaaatatatatgcacctaataccagatcatctaaatgtataaagaaagtattagtagacg-tgaaaagaatcagactgcaatacaataatagcaggagtttttcaatacttcactttcaacgatgaacatatcatctagacagatatcaataaggaaacactggacttgaaatgtgcattagaccgaatggacctaacagacatacatagaacattccatccaacagcagcagaatactcattcttctcaagtgcaaatgggacattatccaggatcaaatattagggaacaaaataagactccatagttttaagaagattgaaatcatatcaagtatcttttctgaccacaaaggtatgaaagtagaaatgaataataggagaaaatttgaaatatttacaaacatggaaattaaacaacatgctcctgaataaacaatgggttaaagaaaaaatcaaaatagaagttaaaaaatat---------------------------------------------cttaagacagatcaaaatgaaaacacaacataccacaacttacagggtgtagcaaaagaaggtattagcaagaggaatgtttatagtaataaatgcctatattaaaaaag----aagatcccaaacaaacagcctaatgttacatttcaagaaactagaaaaagagaagagcaaactaatcccaaagttagcagaaggaaggatataacaaagatcagagcagaaataaataagagactagaaaacaatagaacacattcacaaaatgaagacttgaatttttgaaaagataaaaacgattgacaaaaatttagtagaccaactaagaaaaaaaaggaagactcttataaagtcagaaatgaaagaggagacattaaaatggaaactacagaagtacaaaagatcgtaaaagaatactatgaacaattttacaccaacaaatagggtaacctagaagaaatggttagatttctagaaacataacaagaatgaatcatg-aaaaaatagaaaatctgaacagac---taatgagtaaggaggttgaatcagtaataaaagtctcctaccaaagaaaagcccagaatatgatggatcttgtgttcatggtttggaagaattaatattatta--atatgtatatactacctaaagtgatacacatagtcagtgcaatttctataaaagttcaatgacttttttgtttcacagcaatagaaaaagcaatttaaaaattcgtatggaatgacaaaaaccccaaagtagctgaagcacttttgagcaaaaagaacaaagctggaggcatcacactacctgattcaaaatatattataaagttatagtattcaaaacagaaaggtactggcataacaacagac-----------------------------------ataaactcatgcatttgtggttaattgagttttgccaaagatgccaagaataaacacattatggagaaagggcagtatctttaatgaatgatgctgggaaaatcaaatacccaaatacagaacaatgaaattgaaaccttctttcacaccatatgcaaaaatccactaaaaatggtttaaagatttaattgcatgacctgaaaatgtaaaactactagaagaaaatataggaaaaaatgtccttgaaattaatcatggcaataatttattggtgatgatctcaatagcacaggaaaccaaagcagaaatagacaaatgggattacctcaaaccaaaaagcttctgtataacaaagtaaacaatagattgaagagacaacccatggactgggagaaaatatttacaaaccatacatggttaatattcaaaatatgtaagaaatgcaaacaacttaaatttgttagcaagaaagcaaagaaccccatttaaaactgagcaaaaga-ttaatggacatttttcaaaagatggcataaaagattaacagatgtataaaaaaattcctcaacatcactgatcatcaaggaaatgcaaattagaaccacaatgagatatcacttcatacctgttagaatggctacatcagtaaaataagaggtaataagtattggcaaggatgtggagaagggaatccttatatactaatggtaggaatgtaaattaatacagccattattgaaatcaggatggagattcctcaaaacaaagatagaattcccatatgatccagcaactatatttctgggtacatagccagagagactgaaattagaatgttaaaaaTAtattggtagattttccttcaatttggtcttaatgcctctctttgaagagtggctagaaactctagccctgctctgacgggctccagtggaggtggttgtggttgtggatgttttcagtgttgttttcatggaataattctatatcctgatggagagctaatgcctaattgtcctatttatgaccaggtttccc-ctcactggaaacgtgttttcactggcagacacccttgtggctcttgtctgactagtgtgtccagttcattcctaccaagatcaccactctctaagagagccttgtccacaaaagaagttagtttcagttgtgtcagtcaggtgagaggcaagt----aaacaaaacatgtaatagaagtagttttattacttaaagatcca-gagagaagagggcaactttcctcacaggtctaatgggagaaggggcaggccgcagagacatgcatgctcaaccagtgggtgggtagcaagagagagtgagtgacagccgagaaagccaaagcctttactggagtacacagcattactcaagcagggagtaactgattggtgggtttagagcaagcaggcacgagttcttgggagtcatgttgtattgagaggtgttcactgccgcaaatctgcagtccatgtggggtgtggggatcagtggggtaagtcaagcaggttgtatccaggtgtcccatagggaggtggaaaccaagaggtcaaatacctggattgaccaccttgagaaactgggag
i manLeu1.NW_012104165v1   I 1046 C 0
s colAng1.NW_012115566v1     2080594 3713 -   3067355 ATCGTTGGGATTTAATTTTGGCCTGGTGTTCACTTTCTATATATGGCTATGAACAATTTAATAATGAGGTGAAATAGCCTTAAGTCTGATATATGATGCACCCACATAAAAATGGAAATGGCATGCACAAAGACACTTTACTTTCAGAGCTATATTGGAAAATTTATGGAATTTTAGGTAAAATTGCACCTAAAATTGTGTTATTAGTGACTGTAAGTAGCAATGCTAAATTTATTGTACTTGATGAATGAATGTATTTAGGCTAGTCATGGTTACTTTGGTTTAAATGTCTAAATAACATCTTTAGTTTTAAAAATGTGTTTGTAAT-TTGTACTATTGAC--GGGGATAATCTTGGACTGCAGTGGTTGTTGGCAATGTGTGATTTGTGTTTTCTTATTTTACAGAATTATCTAATGTGATATACTAATTTTTACAGGTAATATTTATATATTTCTAATAATTATATATTTGACAATCTACTAAAATGATTTGCTTTGGAAAAAAACTGaaaaacaatactcaaacat-ggctgcctgtgagaggctaacttcatcttgaagaacacatattgattgaaaaaaatatttcatgcaagtagaaaccaaaagacagcagggatagctctgcttatattagacaaactttaagtccaaaactataaaaagagacaaagaaagttgttacatgatcaaagggtgaattcatcaaaaggacataacaattgtaaatatatatgcacctaataccagatcatctaaatatataaagaaagtattagtagacg-tgaaaagaatcagactgcaatacaataatagcaggagtttttcaatacttcactttcaacgatgaacatatcatctagacagatatcaataaggaaacactggacttgaaatgcgcattagaccaaatggacctaacagacatacatagaacattccatccaacagcatcagaatactcattcttctcaagtgtaaatgggacattatccaggatcaaatattagggaacaaaataagactccatagttttaagaagattgaaatcatatcaagtatcttttctgaccacaaaggtatgaaagtagaaatgaataataggagaaaatttgaaatatttacacacatggaaattaaacaacatgctcctaaataaacaatgggttaaagaaaaaatcaaaatagaaattaaaaaatatcttaagacagatgaaaatgaaaacacaaaagaaattaaaaaataccttaagacagatgaaaatgaaaacacaatataccacaacttacggggtgtagcaaaagaaggtattagcaagagaaatgtttatagtaataaatgcctatattaaaaaagaagaaagatcccaaacaaacagcctaatgttacatttcaagaaactagaaaaagagaagagcaaactaatcccaaagttagcagaaggaaggaaataacaaagatcagagcagaaataaataagagactagaaaacaatagaacacattcacagaatgaagacttgaatttttgaaaagataaaaacaattgacaaaactttagtagaccaactaagaaaaaaaa-gaagactctaataaagtcagaaatgaaagaggagacattaaaattgaaactacagaagtacaaaagatcataaaagaatactatcaacaattttacaccaacaaatagggtaacctagaagaaat-gttagatttctagaaacataacaagagtgaatcacg-aaaaaatagaaaatctgaacagactaataatgagtaaggaggttaaatcagtaataaaagtctcctaccaaagaaaatcccagaatatgatggatcttgtgttcatagtttggaagaattaatattattaatatatatatatactacctaaagtgatacacatattcagtgcaatttctataaaagttcaatgacttttttgtttcacagcaatagaaaaaacaatttaaaaattcgtatggaatgacaaaaaccccaaagtagctgaagcacttttgagcaaaaagaacaaacctggagacatcacactacctgattcaaaatatattacaaagttatagtattcaaaacagaaaggtactggcataacaacagac-----------------------------------ataaactcatgcatttgtggttaattgatttttgccaaagatgccaagaataaacacattatggagaaagggcagtatctttaatgaatgatgctgggaaaatcaaatacccaaatacagaacaatgaaattgaaaccttatttcacaccatatgcaaaaatccactaaaaatagtttaaagatttaattgtatgacctgaaaatgtaaaactactagaagaaaacataggaaaaaatgttcttgaaattaatcatggcaaaaatttattggtgatgatctcaatagcacaggaaaccaaagcagaaatagacaaatgggattacctcaaaccaaaaagcttctgtataataaagtaaacaacagattgaagagacaacccatggactgggagaaaacatttacaaaccatacatggttagtatccaaaatgtgtaagaaatgcaaacaacttaaatttgttagcaagaaagcaaagaaccccatttaaaactgagcagaaga-ttaatggatatctttcaaaagatgacataaaagattaacagatata-aaaaacatttctcaacatcactgattgtcaaggaactgcaaattaaaaccacaatgagatatcacttcatacctgttagaatggctatatcagtaaaataagaggtaataagtattggcaaggatgtggagaagggaatccttatatactaatggtaggaatgtaaattaatacagctattaatgaaatcaggatggagattcctcaaaa-aaagatagaattaccatatgatccagcaactacatttctgcgtacatagccagagagactgaaattagaatgttaaaaaTAtattggtagattttcctttaatttggtcttaatgtctctctttgaagagtggctggaaactctagccctgctctgatgggctccagtggaggtggttgtggttgtggatgttttcagtgttgttttcatggaatacttctatatcctgatggagagctaatgcctaattgtcctgtttattaccaggtttccc-ctcactggaaacttgttttcactggcagacacccttgtggctcttgtctgactagtgtgtccagttcattcctaccaagataaccactctctaagagagccttgtccacaaaagaagttagtttcagttgtgtcagtcaggtgagatgcaagt----aaacaaaacacgtaatagaagtagttttattacttaaagatgcaggagagaagagggcaactttcctcgcaggtctaatgggagaaggggcagccctcagagacatgtatgctcaaccagtgggtgggtagcaagagagagtgagtgacagtcgagaaagccaaagcctttactggggtacacagcattacccaagcagggagtaactgattggtgggtttagagcaagcaggcacgagttcttgggagtcatgttgtattgagaggtgttcactgccgcaaatccgcagtccatgtggggtgtggggatcagtggggtaagtcaagtaggttgtatccacgtgtcccatagggaggtggaaaccaaggggccaaatatctggattgaccaccttgagaaactgggag
i colAng1.NW_012115566v1   C 0 I 1515
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680394 16369 -   2232465 I
e calJac3.chr4             171575985 8172 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=452580.000000
s hg38.chr6_GL000254v2_alt    363359 110 +   4827813 aggagaactcgaaattgtgttaagggtgactaagccctgcttctggtatgagaaagttcaacttatattgaaaataaacactgaggcaacataaaatcataagaattcac
s panTro5.chr6              29337989 110 + 175400573 aggagaactcgaaattgtgttaagggtgactaagccctgattctggtatgagaaagttcaacttatattgaaaataaacactgaggcaacataaaatcataagaattcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29583740 110 + 173848474 aggagaactcgaaattgtgttaagggtgactaagccctgcttctggtatgagaaagttcaacttatattgaaaataaacactgaggcaacataaaatcataagaattcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5381367 110 +   6154872 aggagaactcgaaattgtgttaagggtgactaagccctgcttctggtatgagaaagttcaacttatattgaaaataaacactgaggcaacataaaatcataagaattcac
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29544005 110 + 172585720 aggagaactcgaaattgtattgagggtgactaagccctgcttctggtatgagaaagttcaacttatattgaaaataaacactgaggcaacataaaatcgtaagaattcac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29205121 110 - 170955103 aggagaactcgaaattgtattgagggtgactaagccctgcttctggtatgagaaagttcaacttatattgaaaataaacactgaggcaacataaaatcgtaagaattcac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2212799 110 -   2996164 aggagaactcgaaattgtattgagggtgactaagccctgcttctggtatgagaaagttcaacttatattgaaaataaacactgaggcaacataaaatcgtaagaattcac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2078385 110 -   2157725 aggagaacttgaaattgtgttgagggtgactaagccctgcttctggtatgagaaagttcaacttatattgaaaataaacgctgaggcaacataaaatcgtaagaattcac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28508333 110 -  71996105 aggagaactcgaaattgtgttgagggtgactaagccctgcttctggtatgagaaagttcaacttatattgaaaataaacactgaggcaacataaaatcgtaagaattcac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2221594 110 +   2316924 aggagaactcgaaattgtgttgagggtgactaagccctgcttctggtatgagaaagttcaacttgtattgaaaataaacactgaggcaacataaaatcgtaagaattcac
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1680394 16369 -   2232465 I
e calJac3.chr4             171575985 8172 - 171630274 I
e colAng1.NW_012115566v1     2084307 1515 -   3067355 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1356602.000000
s hg38.chr6_GL000254v2_alt    363469 360 +   4827813 tacagatatttgcactaccatgttcattgtagcattattcacaatagctgagatatggaagg-aacttaaatgcccatcaatggataaacaga-taaatatataaaagggatataatgtg----------------atatatatgagccacattatctatataaaatggaatactatccagccttaaagaaaaaaggaaattctg---tcttttcaacaacattcatgaacctgcaggacattatgcaaagtgaaagaagccagacacagaaagacaaataccacgtgatctcactcatatgtggaatc---taaaaaagataa-----actcatgcaagtggagagtagaat-atagctacc--ttgggggtaggggatggggaaagggga
s panTro5.chr6              29338099 358 + 175400573 tacagatatttgcactaccatgttcattgtagcattattcacaatagctgagatatggaagg-aacttaaatgcccatcaatggataaacaga-taaatatataaaagggatataatgtg----------------atatatacgagccacattatctatataaaatggaatactatccagccttaaagaaaaaaggaaattctg---tcttttcaacaacattcatgaacctgcaggacattatgcaaagtgaaagaagccagacacagaaagacaaataccacgtgatctcactcat--gtggaatc---taaaaaagataa-----actcatgcaagtggagagtacaat-atagctacc--ttgggggtagcggatggggaaagggga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29583850 360 + 173848474 tacagatatttgcactaccatgttcattgtagcattattcacaatagctgagatatggaagg-aacttaaatgcccatcaatggataaacaga-taaatatataaaagggatataatgtg----------------atatatacgagccacattatctatataaaatggaatactatccagccttaaagaaaaaaggaaattctg---tcttttcaacaacattcatgaacctgcaggacattatgcaaagtgaaagaagccagacacagaaagacaaataccacgtgatctcactcatatgtggaatc---taaaaaagataa-----actcatgcaagtggagagtacaat-atagctacc--ttgggggtagcggatggggaaagggga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5381477 360 +   6154872 tacagatatttgcactaccatgttcattgtagcattattcacaatagctgagatatggaagg-aacttaaatacccatcaatggataaacaga-taaatatataaaagggatataatgtg----------------atatatatgagccgcattatctatataaaatggaatactatccagccttaaagaaaaaaggaaattctg---tcttttcaacaacattcatgaacctgcaggacgttatgcgaagtgaaagaagccagacacagaaagacaaataccacgtgatctcactcatatgtggaatc---taaaaaagataa-----actcatgcaagtggagagtagaat-atagctacc--ttgcgggcaggggatggggaaagggga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29544115 365 + 172585720 tacaGTtatttgcactatcatgttcattgtagcattattcacaatagctgagatatggaagg-accttgaatgtccatcaat-gataaagagattaaatatataaaagggatatattgcg------------atatatatatatgtaccacagtatctacataaaatggaatacgattcagccttaaagaaaaagggaaattctg---tctttacagcaacattcatgaacctgcaggacattatgcgaagtgaaagaagccaggcacagaaagacaaataccacatgatctcactcatatgtggaatc---taaaatagttaa-----actcatacaggtggagagtagaatgatagctacc--tggggggcaggggatggagaaacgGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29205231 365 - 170955103 tacaGTtatttgcactatcatgttcattgtagcattatttacaatagctgagatatggaagg-accttgaatgtccatcaat-gataaagagattaaatatataaaagggatatattgcg------------atatatatatatgtaccacagtatctacataaaatggaatacgattcagccttaaagaaaaagggaaattctg---tctttacagcaacattcatgaacctgcaggacattatgcgaagtgaaagaagccaggcacagaaagacaaataccacatgatctcactcatatgtggaatc---taaaatagttaa-----actcatacaggtggagagtagaatgatagctacc--tggggggcaggggatggagaaacgGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2212909 365 -   2996164 tacaGTtatttgcactatcatgttcattgtagcattattcacaatagctgagatatggaagg-accttgaatgtccatcaat-gataaagagattaaatatataaaaggaatatattgcg------------atatatatatatgtaccacagtatctacataaaatggaatacgattcagccttaaagaaaaagggaaattctg---tctttacagcaacattcatgaacctgcaggacattatgcgaagtgaaagaagctaggcacagaaagacaaataccacatgatctcacttatatgtggaatc---taaaatagttaa-----actcatacaggtggagagtagaatgatagctacc--tggggggcaggggatggagaaacgGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2078495 360 -   2157725 tacaGTtatttgcactaccatgttcattgtagcattattcacaatagctgagatatggaagg-aacttaaatgtccatcaat-gataaagaga-taaatatataaaagggatatagtgtg----------------atatatatgtaccacattatctacatagaatggaatacgattcagccttaaagaaaaagggaaattctg---tctttacagcaacattcatgaacctgcaggacattatgtgaagtgaaagaagccaggcacagaaagacaaataccacatgatctcactcatatgtggaatc---taaaaaagttaa-----actcatacaggtggagagtagaatgatagctacc--tggggggcaggggatggataaaggggg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28508443 376 -  71996105 tacaGTtatttgcactaccatgttcattgtagcattattcacaatagctgagatatggaagg-accttgaatgttcatcaat-gataaagagattaaatatataaaagggatataatgcaatatatatatatatatatatatatgtaccacagtatctacataaaatggaatactattcagccttaaagaaaaagggaaattctg---tctttacagcaacattcatgaacctgcaggacattatgtgaagtgaaagaagccaggcacagaaagacaaataccacatgatctcactcatatgtggaatc---taaaaaagttaa-----actcatacaggtggagagtagaatggtagctacc--tggggggcaggggatggagaaaG-GGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2221704 364 +   2316924 tacaGTtatttgcactaccatgttcattgtagcattattcacaatagctgagatatggaagg-accttaaatgtccatcaat-gataaagaga-taaatatataaaagggatataatgcg------------atatatatatatgtaccacattatctatataaaatggaatacgattcagccttaaagaaaaagggaaattctg---tctttacaacaacattcatgaacctgcaggacattatgcgaagtgaaagaagccaggcacagaaagacaaataccacatgatctcactcatatgtggaatc---taaaaaagttaa-----actcatacaggtggagagtagaatgatagctacc--tggggggcaggggatggagaaagtggg
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1696763 338 -   2232465 taaggacattgagactagattatttatcacagctcaatttacaattgccaagatgtggaaaacaacccaagtgcctatcaacccatgaatgga-ttaata----------ataaactgtg----------------gtttatgt----------------atagcatggaatactggtagaccat-----aaaatggagactttacatcttttgtattaatctggatagagttggagaacattctctttagtaaagtatcacaaaaatggaaaagcaagtatccaatgtactcaatactaatttgaagccagtagatgaagtaatgcatgctcacacaagagaaaaacttgat-ttaattaacgttgagggggagggggaagggAGA-----
i otoGar3.GL873742         I 16369 I 132
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171575985 8172 - 171630274 I
e colAng1.NW_012115566v1     2084307 1515 -   3067355 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=45855.000000
s hg38.chr6_GL000254v2_alt    363829 11 +   4827813 gattttaaaca
s panTro5.chr6              29338457 11 + 175400573 gattttaaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29584210 11 + 173848474 gattttaaaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5381837 11 +   6154872 gattttaaaca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29544480 11 + 172585720 GATTTTAAACA
i rheMac8.chr4             C 0 I 375
s macFas5.chr4              29205596 11 - 170955103 GATTTTAAACA
i macFas5.chr4             C 0 I 368
s macNem1.NW_012011356v1     2213274 11 -   2996164 GATTTTAAACA
i macNem1.NW_012011356v1   C 0 I 375
s cerAty1.NW_012001495v1     2078855 11 -   2157725 gattttaaaca
i cerAty1.NW_012001495v1   C 0 I 13981
s chlSab2.chr17             28508819 11 -  71996105 GATTTTAAACA
i chlSab2.chr17            C 0 I 379
s manLeu1.NW_012104165v1     2222068 11 +   2316924 gaTTTtaaaca
i manLeu1.NW_012104165v1   C 0 I 184
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1697101 132 -   2232465 I
e calJac3.chr4             171575985 8172 - 171630274 I
e colAng1.NW_012115566v1     2084307 1515 -   3067355 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=3820.000000
s hg38.chr6_GL000254v2_alt    363840 4 +   4827813 caag
s panTro5.chr6              29338468 4 + 175400573 caag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29584221 4 + 173848474 caag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5381848 4 +   6154872 caag
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29205975 4 - 170955103 CAAG
i macFas5.chr4             I 368 C 0
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1697101 132 -   2232465 I
e calJac3.chr4             171575985 8172 - 171630274 I
e colAng1.NW_012115566v1     2084307 1515 -   3067355 I
e manLeu1.NW_012104165v1     2222079 184 +   2316924 I
e chlSab2.chr17             28508830 379 -  71996105 I
e cerAty1.NW_012001495v1     2078866 13981 -   2157725 I
e macNem1.NW_012011356v1     2213285 375 -   2996164 I
e rheMac8.chr4              29544491 375 + 172585720 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=4095.000000
s hg38.chr6_GL000254v2_alt    363844 3 +   4827813 ata
s panTro5.chr6              29338472 3 + 175400573 ata
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29584225 3 + 173848474 ata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5381852 3 +   6154872 ata
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29205979 3 - 170955103 ATA
i macFas5.chr4             C 0 C 0
s calJac3.chr4             171584157 3 - 171630274 ata
i calJac3.chr4             I 8172 C 0
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1697101 132 -   2232465 I
e colAng1.NW_012115566v1     2084307 1515 -   3067355 I
e manLeu1.NW_012104165v1     2222079 184 +   2316924 I
e chlSab2.chr17             28508830 379 -  71996105 I
e cerAty1.NW_012001495v1     2078866 13981 -   2157725 I
e macNem1.NW_012011356v1     2213285 375 -   2996164 I
e rheMac8.chr4              29544491 375 + 172585720 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1911.000000
s hg38.chr6_GL000254v2_alt    363847 1 +   4827813 T
s panTro5.chr6              29338475 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29584228 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5381855 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29205982 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1         612 1 +    766320 T
i cerAty1.NW_012002711v1   n 13981 C 0
s calJac3.chr4             171584160 1 - 171630274 t
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1697101 132 -   2232465 I
e colAng1.NW_012115566v1     2084307 1515 -   3067355 I
e manLeu1.NW_012104165v1     2222079 184 +   2316924 I
e chlSab2.chr17             28508830 379 -  71996105 I
e macNem1.NW_012011356v1     2213285 375 -   2996164 I
e rheMac8.chr4              29544491 375 + 172585720 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=22693.000000
s hg38.chr6_GL000254v2_alt    363848 4 +   4827813 TTTT
s panTro5.chr6              29338476 4 + 175400573 TTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29584229 4 + 173848474 TTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5381856 4 +   6154872 TTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29544866 4 + 172585720 TTTT
i rheMac8.chr4             I 375 C 0
s macFas5.chr4              29205983 3 - 170955103 -TTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2213660 4 -   2996164 TTTT
i macNem1.NW_012011356v1   I 375 C 0
s cerAty1.NW_012002711v1         613 4 +    766320 TTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28509209 4 -  71996105 TTTT
i chlSab2.chr17            I 379 C 0
s manLeu1.NW_012104165v1     2222263 4 +   2316924 TTTT
i manLeu1.NW_012104165v1   I 184 C 0
s colAng1.NW_012115566v1     2085822 4 -   3067355 TTTT
i colAng1.NW_012115566v1   I 1515 C 0
s calJac3.chr4             171584161 4 - 171630274 tttt
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            355655 61757 -    859332 T
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1697101 132 -   2232465 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=159612.000000
s hg38.chr6_GL000254v2_alt    363852 28 +   4827813 TAACCTTTTGCAGGAAAAATCTTGGAAT
s panTro5.chr6              29338480 28 + 175400573 TAACCTTTTGCAGGAAAAATCTTGGAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29584233 28 + 173848474 TAACCTTTTGCGGGAAAAATCTTGGAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5381860 28 +   6154872 TAACCTTTTGCAGGAAAAATCTTGGAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29544870 28 + 172585720 TAACCTGTTGCAGGAAAAATCTGGGAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29205986 28 - 170955103 TAACCTGTTGCAGGAAAAATCTGGGAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2213664 28 -   2996164 TAACCTGTTGCAGGAAAAATCTGGGAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1         617 28 +    766320 TCACCTGTTGCAGGAAAAATCTTGGAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28509213 28 -  71996105 CAACCTGTTGCAGGAAAAATCTGGGAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2222267 28 +   2316924 TAACCTGTTGCAGGAAAAATCTGGGAAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2085826 28 -   3067355 TAACCTGTTGCAGGAAAAATCTGGGAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171584165 28 - 171630274 taatCTTTTGCCAGAAAAATGTTGGAAT
i calJac3.chr4             C 0 C 0
s dasNov3.JH570037            293898 28 -    859332 TGAACTTTTACAGGGATAAATTTAGAAT
i dasNov3.JH570037         T 61757 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e otoGar3.GL873742           1697101 132 -   2232465 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=42159.000000
s hg38.chr6_GL000254v2_alt    363880 6 +   4827813 TGAATT
s panTro5.chr6              29338508 6 + 175400573 TGAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29584261 6 + 173848474 TGAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5381888 6 +   6154872 TGAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29544898 6 + 172585720 TGAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29206014 6 - 170955103 TGAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2213692 6 -   2996164 TGAATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1         645 6 +    766320 TGAATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28509241 6 -  71996105 TGAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2222295 6 +   2316924 TGAATT
i manLeu1.NW_012104165v1   C 0 I 187
s colAng1.NW_012115566v1     2085854 6 -   3067355 TGAATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171584193 6 - 171630274 TGATTT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1697233 6 -   2232465 TGAAAT
i otoGar3.GL873742         I 132 C 0
s dasNov3.JH570037            293926 6 -    859332 TTAATT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=935387.000000
s hg38.chr6_GL000254v2_alt    363886 164 +   4827813 TAAAAGACAACTGGGATGGCATAAATAATATAGGTCAG----------T-CTCAAagagcacgtcattagtaaggaatagatatacag------tttagtctttatgtattctagtttttcagt------tgaatggctctgaaatcac-tcc-tttttt---ccagttgtcttgtaaattttacccttagc
s panTro5.chr6              29338514 164 + 175400573 TAAAAGACAACTGGGATGGCATAAATAATATAGGTCAG----------T-CTCAAagagcacgtcattaataaggaatagatatacag------tttagtctttatgtattctagtttttcagt------tgaatggctctgaaatcac-tcc-tttttt---ccagttgtcttgtaaatttgacccttagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29584267 164 + 173848474 TAAAAGACAACTGGGATGGCATAAATAATATAGGTCAG----------T-CTCAAAGAGCACATCATTAATAAGGAATAGATATACAG------TTTAGTCTTTATGTATTCTAGTTTTTCAGT------TGAATGGCTCTGAAATCAC-TCC-TTTTTT---ccagttgtcttgtaaatttgacccttagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5381894 165 +   6154872 TAAAAGACAACTGGGATGGCATAAATAATATAGGTCAG----------T-CTCAAagagcacgtcattaataaggaacagataaacag------tttagtctttatgtattctagtttttcagt------tgaatggctctgaaatcac-tccttttttt---ccagttgtcttgtaaatttgacccttagc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29544904 163 + 172585720 TAAAAGACAACTGGGAAGGCATAAATAATATAGGTCAG----------T-CTCAAAGAGCACGCCATTAGTAAGGAACAGTTACACAG------TTTAGTCTTTATGTATTCTAGGTTTTCTGT------TGAGT-GCTCTGAAATAAC-CCC-TTTTTT---ccagttgtcttgtaaattcgacccttagc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29206020 163 - 170955103 TAAAAGACAACTGGGAAGGCATAAATAATATAGGTCAG----------T-CTCAAagagcacgccattagtaaggaacagttacacag------tttagtctttatgtattctaggttttctgt------tgagt-gctctgaaataac-ccc-tttttt---ccagttgtcttgtaaattcgacccttagc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2213698 163 -   2996164 TAAAAGACAACTGGGAAGGCATAAATAATATAGGTCAG----------T-CTCAAagagcacgccattagtaaggaacagttacacag------tttagtctttatgtattctaggttttctgt------tgagt-gctctgaaataac-ccc-tttttt---ccagttgtcttgtaaattcgacccttagc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1         651 157 +    766320 TAAAAGACAACTGGGAAGGCATAAATAATATAGGTCAG----------T-CTCAAagagcacctcattaataagga--------agag------tttagtctttatgtattttagtttttctgt------tgaatggctctcaagtctctcct-tttttt---ccagttgtcttgtaaatttgacccttagc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28509247 163 -  71996105 TAAAAGACAACTGGGAAGGCATAAATAATATAGGTCAG----------T-CTCAAAGAGCATGCCATTAGTAAGGAACAGATACACAG------TTTAGTCTTTATGTATTCTAGTTTTTCTGT------TGAGT-GCTCTGAAATAAC-TCC-TTTTTT---ccagttgtcttgtaaattcgacccttagc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2222488 163 +   2316924 TAAAAGACAACTGGGAAGGCATAAATAATATAGGTCAG----------T-CTCAAagagcacaccattagtaaggaacagatacacag------tttagtctttatgtattctagtttttctgt------tgagt-gctcttaaataac-tcc-tttttt---ccagttgtcttgtaaatttgacccttagc
i manLeu1.NW_012104165v1   I 187 C 0
s colAng1.NW_012115566v1     2085860 164 -   3067355 TAAAAGACAACTGGGAAGGCATAAATAATATAGGTCAG----------T-CTCAAagagcatgccattagtaaggaacagatacacag------tttagtctttatgtattctagtttttctgt------tgagt-gctctgaaataactcct-tttttt---ccagttgtcttgtaaatttgacccttagc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171584199 167 - 171630274 TAAAAGTCAACTGGGAAGGCATAAATAATACAGGTCAA----------T-CTCAAAGAGTACCTCATTAATAAGGAAAAGATACATAGTTTAGTTTTAGTCTTTATGTATTCTA---TTTCTTT------TGAATGGCAATCAATCGCT-CCT-TTTTTT---CCAGTTGTCTTGTAAATTTGACCCTTAGC
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1697239 166 -   2232465 TAAAAAAAAA----GAAAGCATAAAAGGTATAGAATATCTAAAGCACCT-TTCAAAGAGGACCCTGTTGATAAGGAAAAGACATGT--------TTTAGTCTT----TATTTCAGTTTTTCTGT------TGACTGGGTCTCAAACCTC-TCC-TACTTTTGACCCATTGCTTTGTAAATTTGG-CCTTAGC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            293932 172 -    859332 TAAAGTCCAAGCAGGAAGCCACAAATGGTGCAGGAAAG----------TACTCAAAGAATGCAATGTTAATAAGGAA-AAACAAGCA-------TTTAGTCTTCATATGCTCCATCTTTTCTTTTTCTTCTACATGACTCCTAAACTTC-CCC-TATTTGTAACCAGAGTTCTTAAAATTTTAGGCCTTAat
i dasNov3.JH570037         C 0 I 47
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=146301.000000
s hg38.chr6_GL000254v2_alt    364050 27 +   4827813 cccatggaaaactgaaaaaaaa--tcaca
s panTro5.chr6              29338678 29 + 175400573 cccatggaaaactgaaaaaaaaaatcaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29584431 28 + 173848474 cccatggaaaactgaaaaaaaa-atcaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5382059 28 +   6154872 cccatggaaaactgaaaaaaaa-atcaca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29545067 29 + 172585720 cccatggaaaactgaaaaaagaaatcaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29206183 29 - 170955103 cccatggaaaactgaaaaaagaaatcaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2213861 29 -   2996164 cccatggaaaactgaaaaaagaaatcaga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1         808 25 +    766320 cccataggaaactgaaa----aaatcaga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28509410 29 -  71996105 cccatggaaaactgaaaaaagaaatcaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2222651 29 +   2316924 cccatggaaaactgaaaaaagaaatcaga
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2086024 29 -   3067355 cccatggaaaactgaaaaaagaaatcaga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171584366 27 - 171630274 CCCATGGGAAACTGAAAAAATA--TCAGA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1697405 28 -   2232465 CCCATGAGAAACTGGGGTAAAA-ATCACA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            294104 47 -    859332 I
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=593799.000000
s hg38.chr6_GL000254v2_alt    364077  93 +   4827813 tggctcagtaaaacccattccctttattgtaaatataactcacagcaTCTTTTCCCATATTTGTAAG----------------T-GATAAATTCAC-----TGTCATCACAGTAA
s panTro5.chr6              29338707  93 + 175400573 tggctcagtaaaacccattccctttattgtaaatataactcacagcaTCTTTTCCCATATTTGTAAG----------------T-GATAAATTCAC-----TGTCATCACAGTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29584459  93 + 173848474 tggctcagtaaaacccattccctttattgtaaatataactcacagcATCTTTTCCCATATTTGTAAG----------------T-GATAAATTCAC-----TGTCATCACAGTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5382087  93 +   6154872 tggctcagtaaaacccattccctttattgtaaatataactcacagcaTCTTTTCCCATATTTGTAAG----------------T-GATAAATTCAC-----TGTCATCACAGTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29545096  93 + 172585720 tggctcagtaaaacccattccctttattgtaaatataactcacagcaTCTTTTCCCATGTTTGTTGG----------------T-GATAAATTCAC-----TGTCATCGCAGTGA
i rheMac8.chr4             C 0 I 9
s macFas5.chr4              29206212  93 - 170955103 tggctcagtaaaacccattccctttattgtaaatataactcacagcaTCTTTTCCCATGTTTGTTGG----------------T-GATAAATTCAC-----TGTCATCACAGTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2213890  93 -   2996164 tggctcagtaaaacccattccctttattgtaaatataactcacagcaTCTTTTCCCATGTTTGTTGG----------------T-GATAAATTCAC-----TGTCATCACAGTGA
i macNem1.NW_012011356v1   C 0 I 9
s cerAty1.NW_012002711v1         833  93 +    766320 cagctcagtcaaacctgttcctttcgttgtaaatgtaactcacagcaTCTTTTCCCATGTTTGTTGG----------------T-GATAAATTCAC-----TGTCATCTCAGTAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28509439  93 -  71996105 tggctcagtaaaacccattccctttattgtaaatataactcacagcaTCTTTTCCCATGTTTGTTGG----------------T-GATAAATTCAC-----TGTCATCACAGTGA
i chlSab2.chr17            C 0 I 9
s manLeu1.NW_012104165v1     2222680  93 +   2316924 tggctcagtaaaacccattccctttactgtaaatataactcacagcaTCTTTTCCCATGTTTGTTGG----------------T-GATAAATTCAC-----TGTCATCACAGTGA
i manLeu1.NW_012104165v1   C 0 I 9
s colAng1.NW_012115566v1     2086053  93 -   3067355 tggctcagtaaaacccattccctttattgtaaatataactcacagcaTCTTTTCCCATATTTGTTGG----------------T-GATAAATTCAC-----TGTCATCACAGTGA
i colAng1.NW_012115566v1   C 0 I 9
s calJac3.chr4             171584393  98 - 171630274 CGGCTCAGTAAAATTTATTCCCTTTATTTTAAATATAACTCACAGAATCTTTTCCCATGTTTGTTGA----------------T-GATAAATTTACTGTCATGTCATCTCAGTAG
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1697433 102 -   2232465 TGAGTCAGTAGAATCCATTCCCTTTACTGTAAATAT--CTCACAGTGCCATTTC-----TGTGTTGGAAAAGATAAATTCACCA-GATAAATTCAT-----TTTCAGCTCATTAA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            294151  92 -    859332 TCACTCAATATAATCCATCCCCATCATTTTTGATTCAACTCAAAGCACCATTTTCCAGGTTAGTTTG----------------TGGATAAACTCAC-----TGTGATCTCTGT--
i dasNov3.JH570037         I 47 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=7955.000000
s hg38.chr6_GL000254v2_alt    364170 6 +   4827813 GACTAT--
s panTro5.chr6              29338800 6 + 175400573 GACTAT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29584552 6 + 173848474 GACTAT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5382180 6 +   6154872 GACTAT--
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29206305 5 - 170955103 -ATCAT--
i macFas5.chr4             C 0 I 4
s cerAty1.NW_012002711v1         926 6 +    766320 GACTAT--
i cerAty1.NW_012002711v1   C 0 C 0
s calJac3.chr4             171584491 6 - 171630274 GACTAT--
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1697535 6 -   2232465 GACTAC--
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            294243 6 -    859332 --GCATTC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e colAng1.NW_012115566v1     2086146 9 -   3067355 I
e manLeu1.NW_012104165v1     2222773 9 +   2316924 I
e chlSab2.chr17             28509532 9 -  71996105 I
e macNem1.NW_012011356v1     2213983 9 -   2996164 I
e rheMac8.chr4              29545189 9 + 172585720 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=3429611.000000
s hg38.chr6_GL000254v2_alt    364176 502 +   4827813 AACATCATACTGAAGATATTTCTGTGAAGAGTTTTGTACTGAGAACACCA---------CACCA-GGACAACT---TGAAGGGCATTAA-TTGCAACTTTGGGATTTATACTCCCAAAGGCCCCAGTCAATGAAAGAGTATCCCATTATTCTTTTTGGTTCCATAAAGATTCCATTTACTCTGGGATAAAGGGTCCATCCCCTGATACCTTGAATGCTCTAAAGTATTCCCACATTCTGCTAAAAAGCAGATCTTTTGGACAAACTCAGGCTCTCTTTTCTGTAGCAATGACAATCACAGTTATTTCCAGACTCTGTTCTCCATAGTTAGATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTAGGTTGATGTTTCTAGGTTGCATGGCAACCAGAGAGCCCCTTCATCAGTTTATACATGATGAGGTCGTAGGCCAGGTAGAGAG---TGACAGGGAACAGGGACAAACACAGGAAGGTCAGTACTGAAAGAAGTTGGC---GCA--CTTCTTAAG----GG
s panTro5.chr6              29338806 505 + 175400573 AACATCATACTGAAGATATTTCTGTGAAGAGTTTTGTACTGAGAACACCA---------CACCA-GGACAACTCCTTGAAGGGCATTAA-TTGCAACTTTGGGATTTATACTCCCAAAGGCCCCAGTCAATGAAAGAGTATCCCATTATTCTTTTTGGTTCCATAAAGATTCCATTTACTCTGGGATAAAGGGTCCATCCCCTGATACCCTGAATGCCCTAAAGTATTCCCACATTCTGCTAAAAAGCAGATCTTTTGGACAAACTCAGGCTCTCTTTTCTGTAGCAATGACAATCGCAGTTATTTCCAGACTCTGTTCTCCATAGTTAGATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTAGGTTGATGTTTCTAGGTTGCATGGCAACCAGAGAGCCCCTTCATCAGTTTATACATGATGAGGTCGTAGGCCAGGTAGAGAG---TGACAGGGAACAGGGACAAACACAGGAAGGTCAGTACTGATAGAAGTTGGC---GCA--CTTCTTAAG----GG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29584558 505 + 173848474 AACATCATACTGAAGATATTTCTGTGAAGAGTTTTGTACTGAGAACACCA---------CACCA-GGACAACTCCTTGAAGGGCATTAA-TTGCAACTTTGGGATTTATACTCCCAAAGGCCCCAGTCAATGAAAGAGTATCCCATTATTCTTTTTGGTTCCATAAAGATTCCATTTACTCTGGGATAAAGGGTCCATCCCCTGATACCCTGAATGCCCTAAAGTATTCCCACATTCTGCTAAAAAGCAGATCTTTTGGACAAACTCAGGCTCTCTTTTCTGTAGCAATGACAATCGCAGTTATTTCCAGACTCTGTTCTCCATAGTTAGATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTAGGTTGATGTTTCTAGGTTGCATGGCAACCAGAGAGCCCCTTCATCAGTTTATACATGATGAGGTCGTAGGCCAGGTAGAGAG---TGACAGGGAACAGGGACAAACACAGGAAGGTCAGTACTGAAAGAAGTTGGC---GCA--CTTCTTAAG----GG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5382186 505 +   6154872 AACATCATACTGAAGATATTTCTGTGAAGAGTTTTGTATTGAGAACACCA---------CACCA-GGACAACTCCTTGAAGGGCATTAA-TTGCAACTTTGGGATTTATACTCCCAAAGGCCCCAGTCAGTGAAAGAGTATCCCATTATTATTTTTGGTTCCATAAAGATTCCATTTACTCTGGGATAAAGGGTCCATCCCCTGATACCTTGAATCCTCTAAAGTATTCCCACATTCTGCTAAAAAGCAGATCTTTTGGACAAACTCAGGCTCTCTTTTCGGTAGCAATGACAATCACAGTTATTTCCAGACTCTGTTCTCCATAGTTAGATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTAGGTTGATGTTTCTAGGTTGCATGGCAACCAGAGAGCCCCTTCATCAGTTTATACATGATGAGGTCGTAGGCCAGGTAGAGAG---TGACAGGGAACAGGGACAAACACAGGAAGGTCAGTACTGAAAGAAGTTGGC---GCA--CTTCTTAAG----GG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29545198 504 + 172585720 AACAT-ATGCTGAAGATATTTCTGTGAAAAGTTTTGTACTGAGAACATCA---------CACCA-GGACAACTCCTTGAAGGGCCTTAA-TTGCAACTTTGAGATTTATAATCCCAAAGGCCCTAGTCAATGAAAGAGTATCCCATTATTCTTTTTGTTTCCGTAAAGATTGCATTTGCTCTGGGATAAAGGGTCCATCCCCTGATGCCTTGAATGCCCTAAAGTATTCCCACATTCTGCTAAAAAGCAGATCTTTTGGACAAACTCAGGCTGTCTTTTCTGTAGCAATGACAATCACAGTTATTTCCAGACTCTGTTGTCCATAGTTAAATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTAGGTTGATGTTTTTAGGTTGTACGGCAACCAGAGAGCCCCTTTGTCAGTTTATACATGATGAGGTCATAGGTCAGGAAGAGAG---TGACAGGGAACAGAGACAAGCACAGGAGGGTCAGTACTGAAAGAAGTTGGT---GCA--CTTCTTAAG----GG
i rheMac8.chr4             I 9 C 0
s macFas5.chr4              29206314 504 - 170955103 AACAT-ATGCTGAAGATATTTCTGTGAAAAGTTTTGTACTGAGAACATCA---------CACCA-GGACAACTCCTTGAAGGGCATTAA-TTGCAACTTTGAGATTTATAATCCCAAAGGCCCTAGTCAATGAAAGAGTATCCCATTATTCTTTTTGTTTCCGTAAAGATTGCATTTGCTCTGGGATAAAGGGTCCATCCCCTGATGCCTTGAATGCCCTAAAGTATTCCCACATTCTGCTAAAAAGCAGATCTTTTGGACAAACTCAGGCTGTCTTTTCTGTAGCAATGACAATCACAGTTATTTCCAGACTCTGTTGTCCATAGTTAGATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTAGGTTGATGTTTTTAGGTTGTACGGCAACCAGAGCGCCCCTTTGTCAGTTTATACATGATGAGGTCATAGGTCAGGAAGAGAG---TGACAGGGAACAGAGACAAGCACAGGAGGGTCAGTACTGAAAGAAGTTGGT---GCA--CTTCTTAAG----GG
i macFas5.chr4             I 4 C 0
s macNem1.NW_012011356v1     2213992 503 -   2996164 AACAT-ATGCTGAAGATATTTCTGTGAAAAGTTTTGTACTGAGAACATCA---------CACCA-GGACAACTCCTTGAAGGGCATTAA-TTGCAACTTTGAGATTTATAATCCCAAAGGCCCTAGTCAATGAAAGAGTATCCCATTATTCTTTTTGTTTCCGTAAAGATTGCATTTGCTCTGGGATAAAGGGTCCATCCCCTGATGCCTTGAATGCCCTAAAGTATTCCCACATTCTGCTAAAAAGCAGATCTTTTGGACAAACTCAGGCTGTCTTTTCTGTAGCAATGACAATCACAGTTATTTCCAGACTCTGTTGTCCATAGTTAGATTTAAAA-ATTGGCAAAAATGTTATAAGAAGGCAATTAGGTTGATGTTTTTAGGTTGTACGGCAACCAGAGCGCCCCTTTGTCAGTTTATACATGATGAGGTCATAGGTCAGGAAGAGAG---TGACAGGGAACAGAGACAAGCACAGGAGGGTCAGTACTGAAAGAAGTTGGT---GCA--CTTCTTAAG----GG
i macNem1.NW_012011356v1   I 9 C 0
s cerAty1.NW_012002711v1         932 505 +    766320 AACATCATGCTGAAGATATTTCTGTGAAGAGTTTTGTACTGAGAACATCA---------CACCA-GGACAACTCCTTGAAGGGCATTAA-TTGCAGCTTTGGGATTTATACTCCCAAAGACCCCAATCAGTGAAAGAGTATCCCATTATTCTTTTTGTTTCCATAAAGCTTGCATTTGCTCTGGGATAAAGGGTCCATCCCGTGATACCTTGAATGCCCTAAAGTATTCCCACATTCTGCTAAAAAGCAGATCTTTTGGAGAAACTCAGGCTGTCTTTTCTGTAGCAATGACAATCACAGTTATTTCCAGACTCTGTTGTCCATAGTTAGATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTAGGTTGATGTTTTTAGGTTGTACAGCAACCAGAGAGCCCCTTCGTCAGTTTATACATGATAAGGTCATAGGTCAAGAGGAGAA---TGACAGGAAACAGGGACAAGCACAGGAAGGTCAGTACTGAAAGAAGTTGGT---GCA--CTTCTTAAG----GG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28509541 504 -  71996105 AACAT-ATGCCGAAGATATTTCTGTGAAGAGTTTTGTACTGAGAACATCA---------CACCA-GGACAACTCCTTGAAGGGCATTAA-TTGCAACTTTGAGATTTATAATCCCAAAGGCCCTAGTCAATGACAGAGTATCCCATTATTCTTTTTGTTTCCATAAAGATTACATTTGCTCTGGGATAAAGGGTCCATCCCCTGATGCCTTGAATGCCCTAAAGTATTCCCACATTCTGCTAAAAAGCAGATCTTTTGGACAAACTCAGGCTGTCTTTTCTGTAGCAATGACAATCACAGTTATTTCCAGACTCTGTTGTCCATAGTTAGATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTAGGTTGATGTTTTTAGGTTGTACGGCAACCAGAGCGCCCCTTCGTCAGTTTATACATGATGAGGTCATAGGTCAGGAAGAGAG---TGACAGGGAACAGAGACAAGCACAGGAGGGTCAGTACTGAAAGAAGTTGGT---GCA--CTTCTTAAG----GG
i chlSab2.chr17            I 9 C 0
s manLeu1.NW_012104165v1     2222782 504 +   2316924 AACAT-ATGCTGAAGATATTTCTGTGAAAAGTTTTGTACTGAGAACATCA---------CACCA-GGACAACTCCTTGAAGGGCATTAA-TTGCAGCTTTGGGATTTATACTCCCAAAGGCCCCAATCAGTGAAAGAGTATCCCATTATTCTTTTTGTTTCCATAAAGATTGCATTTGCTCTGGGATAAAGGGTCCATCCCCTGATGCCTTGAATGCCCTAAAGTATTCCCACATTCTGCTAAAAAGCAGATCTTTTGGACAAACTCAGGCTGTCTTTTCTGTAGCAATGACAACCACAATTATTTCCAGACTCTGTTGTCCATAGTTAGATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTACGTTGATGTTTTTAGGTTGTACAGCAACCAGAGAGCCCCTTCGTCAGTTTATACATGATGAGGTCATAGGTCAGGAGGAGAG---TGACAGGAAACAGGGACAAGCACAAGAAGGTCAGTACTGAAAGAAGTTGGT---GCA--CTTCTTAAG----GG
i manLeu1.NW_012104165v1   I 9 C 0
s colAng1.NW_012115566v1     2086155 504 -   3067355 AACAT-ATGCTGAATATATTTCTGTGAAAAGTTTAGTACTGAGAACATCA---------CACCA-GGACAACTCCTTGAAGGGCATTAA-TTGCAACTTTGAGATCTATCATCCCAAAGGCCCCAGTCAATGAAAGAGTATTCCATTATTCTTTTTGTTTCCATAAATATACCATTTACTCTGGGATAAAGTCTCCATCCCCTGATACCTTGAATGCCCTAAAGTATTTCCACATTCTGCTAAAAAGCAGATCTTTTGGACAAACTCAGGCTGTCTTTTCTGTAGCAATGACAATCACAGTTATTTCCAGACTCTGTTGTCCATAGTTAGATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTAGGTTGACGTTTTTAGGTTGTATGACAACCAGAGAGCCCCTTCATCAGTTTATACATGATGAGGTCATAGGTCAGGAAGAGAG---TGACAGGGAACAGGGACAAACACAGGAAGGTCAGTACTGAAAGAAGTTGGT---GCA--CTTCTTAAG----GG
i colAng1.NW_012115566v1   I 9 C 0
s calJac3.chr4             171584497 493 - 171630274 AACGTCATGCTGAAGATATGTCTGTGAAGAGTTTTGTACTGAGAACGTCA---------CACCA-GGACAACGCCTCGAAGGGCATTGA-TTGCAACCTTGGGATTTATACTCCCAAAGGTCCCAGTCAAGGAAAGAGTATCTCATTATTCTTTTTGTTTTCATAAAGCTACCATTTACACTGGGATAAAGGGTCCATCCCCTGATACCTTGAATGCCCTGAAGTATTCCCACATTCTGCTAAAAAGCAAATCTTTTGGACAAACTCAGGCTCTCTTTTCTGTAGCAATGACAAT--CAGTTATTTCCAGA--CTGTTCTCCCTAGTTAGATTT-AAACACTGGCAAAAATGTCATAAGAAGGCAATCAGATTGATGTTTTTAGGTTGTATAA-----AGAGAGCCTTTTCATCAGTTTATACATGATGAGGTCGTAGACCATGAAGAGAG---GGAC--GGAACATGGACAAACACAGGAAGGTCAGTACTGAAAGAAGTTGGT---GCA--CTTCTTAAG----AG
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1697541 505 -   2232465 --AATCATGCTGGAG-TATTTCTGTGAAGCATTTTGTGTTGTGAACATCA---------CACCATGGACAACTCCTTGAGGGGCATTAA-TTGCAACTTTGGGAGTTATCCTCCCGAGAGTGCCAGCCAAGGAAAGAAAATCCCATTATTCTTTGTGTTTTCATAAAGTTTCCATTTGCTTTGGGATAAGGGGTCCATCCCTGGATACCTTGAATGCCCTGAAGTGTT-CTGCATTTTGTTAAAAGGTAGCTCTCCTGTACAAACTCAGGCTCTTTCTTCTGTAGCAATGATGTGCACAGTTATTTTCAGATTCTGTTCTCCACAGTTATATTTAGTACATTGGTAAAAACAGTCTAAGGAGACAATTAGGTTGATGTTTCAAGGTTGCATGACAATCAGAGAGCCTC-ACATCAGTTTATAC---ATCAGGTCATAGACCAGGAAGAGAA---CAACAGGAAACATGGACAAACCCAAGAAGGTCAGTACTGAAGAAAGTTGATAGAGCA--CAGCTTAAGAACTAG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            294249 514 -    859332 AACACCATGCTGAAGGCATTTCTAGAAGGATTCTTGC-TTGTGAACATCACACCTTTCTCACCA-GGACAGCTCCTTGAAAGACTTTAATTTGTCACTTTGGGGTTTATTCTCCCAGTGGCCCCAGCCAGGGGAAGCAGGCCATATTCCTCTTT-TGTTTCCATAAAAGCCCCATAGACCCTGGGATAAAAGTTCCTTCCCTTGTCA-TTTGAATGTCCTAAAGTGATCCCACATTCTGCTAAAA-GCCAACATTTTGGACAGATCCAGGCTCCCTCTGCCGTGACAGTAGAAATCACAGGTATTTTCAGACTCTGCTTTCCACAGTTAGATTTGGTGTGTTAGAAAAGAGGGTAT-AGAGGGAAATCAGGTTGATACTTTTGGGACACATGACACCTAGAGAACCCC-ACATTGGTTTATCCACGGTGAGTGCATAGACCAGGAAGAGAAGATCAACAGCGAACGTGAACGAACACAGGAAGGTCAGTACTGTATGGAACGGAT---GGAGCCTGCTTAAG----AG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1176121.000000
s hg38.chr6_GL000254v2_alt    364678 202 +   4827813 GTGTACAGCttctgtatttcaaaattgcaggaagtgtagattttaaatgttcttactac-aaaaaaatgatgtgtgtgaggtgataggtacattaactagcttaatataatcattctatga--tgtatatacatatcaaaacattacaatgtactccatacatatatacaattattactagtcaatgaa-----aaaGTAAGAAAACAAA
s panTro5.chr6              29339311 202 + 175400573 GTGTACAGCttctgtatttcaaaattgcaggaagtgtagattttaaatgttcttaatac-aaaaaaatgatgtgtgtgaggtgataggtacattaactagcttaatataatcattctatga--tgtatatacatatcaaaacattacaatgtactccatacatatatacaattattactagtcaatgaa-----aaaGTAAGAAAACAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29585063 202 + 173848474 GTGTACAGCttctgtatttcaaaattgcaggaagtgtagattttaaatgttcttactac-aaaaaaatgatgtgtgtgaggtgataggtacattaactagcttaatataatcattctatga--tgtatatacatatcaaaacattacaatgtactccatacatatatacaattattactagtcaatgaa-----aaaGTAAGAAAACAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5382691 207 +   6154872 GTGTACAGCttctgtatttcaaaattgcaggaagtgtagattttaaatgttcttcctac-aaaaaaatgatgtctgtgaggtgataggtacattaactagcttaatataatcattctatga--tgtatatacatatcaaaacattacaatgtactccataaatatatataattattactagtcaatgaaaaattaaaGTAAGAAAACAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29545702 207 + 172585720 GTAGACAGCTTCCatatttcaaaatcgcaggaagtgtagattttaaatgttcttactac-aaaaaaatgatgggtgtgaagtgatagatacattaactagtttaatataatcattctataa--tgtatatacatatcaaaacattacaatgtactccataaatatatacaattatacctagtcaatgaaaaattaaaATAAGAAAACAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29206818 207 - 170955103 GTAGACAGCTTCCatatttcaaaatcgcaggaagtgtagattttaaatgttcttactac-aaaaaaatgatgggtgtgaagtgatagatacattaactagtttaatataatcattctataa--tgtatatacatatcaaaacattacaatgtactccataaatatatacaattatacctagtcaatgaaaaattaaaATAAGAAAACAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2214495 207 -   2996164 GTAGACAGCTTCCatatttcaaaatcgcaggaagtgtagattttaaatgttcttactac-aaaaaaatgatgggtgtgaagtgatagatacattaactagtttaatataatcattctataa--tgtatatacatatcaaaacattacaatgtactccataaatatatacaattatacctagtcaatgaaaaattaaaATAAGAAAACAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        1437 202 +    766320 GTAGACAGCTTCCatatttcaaaattgcagaaagtgtagattttaaatgttcttactac-aaaaatatgatggatgtgaggtgatggatatattaactagcttaatataatcattctgtaa--tgtatatatacatcaaaacattacaatgtactccataaatatatgcaattattactggtcaatgaaaaat-----TAAGAAAACAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28510045 207 -  71996105 GTAGACAGCTTCCatatttcaaaatcgcaggaagtgtagattttaaatgttcttactac-aaaaaaatgatgggtgtgaagtgatagatacattaactagtttaatataatcattctataa--tgtatatacatatcaaaacattacaatgtactccataaatatatacaattattactagttagtgaaaaattaaaGTAAGAAAACAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2223286 203 +   2316924 GTAGACAGCTTCCatatttcaaaattgcagaaagtgtagattttaaatgttcttactac-aaaaaaatgatgggtgtgaggtgatagatacattaaatcgtttaatataatcattctataa--tgtatatacatatcaaaacattacaatgtactccataaatatatataattattactagtcaatgaaaaatta----aaGAAAACAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2086659 208 -   3067355 GTAGACAGCTTCCatgtttcaaaatcgcaggaagtgtagattttaaatgttgttactacaaaaaaaaaaatgggtgtgaggtgatagatacattaactagtttaatataatcattctataa--tatatatacatatcaaaacattacaatgtactccataaatatatgtaattattactagtcaatgaaaaattaaaGTAAGAACACAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171584990 199 - 171630274 GTGGACAGTTTCCatatttaaaaattgca--aagtttagattttacatgttcttactac-aaaataatgatggttgtgaggtgatgcatatattaactagcttaatataatcattctataatgtgtatatatatatcaaaacattacaatgtacttcataaata----caattattactagtcaatgaaaaatta----aaGAAAATAAA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1698046 199 -   2232465 ATAGAGAGCttctatatttcaaaattgctaaaagagtagttcgtaaatgtttttactac-aaaaaaa-gat--ctgtgaggtgatgaatgtgttaattagcttaatgtaatgattccgcaa--tgtatatgtgtatcaaaacattccattgtaccctatacatatatacaattattattcaacaattaaaagttaaaGTAAA-----AAA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            294763   0 -    859332 C
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1972583.000000
s hg38.chr6_GL000254v2_alt    364880 334 +   4827813 CCAGATATAGTATAAAGGAATGAATATGACACGAATTGGGAAAATGTCTCTTAGTAATAATTGGGGAAAGAAGAGA-CACTCAGCCATCCATTTTCCCTACAGTGTTTGATTTAAAAGAAGAGAGAAGATATTTTATTCCATAGTTCATAAAAGCTACATTTGATAGGGTCTTCATTTCCCTCTTTTCCTCCAAGAAGAAAATCGAAGC-TGCA----AACTTTTCTCTACGTGA-GTTCTGG---GTTT-TTTTTTTTTTTTGTCCCTTATTTCCTATCCTTTTTATCGACTCTGGAAGAATGCTGAAAGATGGTTTATACAAC-------AG----AAAAATATCAGATTTCAC
s panTro5.chr6              29339513 329 + 175400573 CCAGATATAGTATAAAGGAATGAATGTGACACGAATTGGGAAAATGTCTCTTAGTAATAATTGGGGAAAGAAGAGA-CACTCAGACATCCATTTTCCCTACAGTGTTTGATTTAAAAGAAGAGAGAAGATATTTTATTCCATAGTTCATAAAAGCTACATTCGATAGGGTCTTCATTTCCCTCTTTTCCTCCAAGAAGAAAATCGAAGC-TGCA----AACTTTTCTCTACGTGA-GTTCTGG---GTTT-TTTTTTT-----GTCCCTTATTTCCTATCCTTTTTATCAACTCTGGAAGAATGCTGAAAGATGGTTTATACAAC-------AG----AAAAATATCAGATTTCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29585265 329 + 173848474 CCAGATATAGTATAAAGGAATGAATATGACACGAATTGGGAAAATGTCTCTTAGTAATAATTGGGGAAAGAAGAGA-CACTCAGACATCCATTTTCCCTACAGTGTTTGATTTAAAAGAAGAGAGAAGATATTTTATTCCATAGTTCATAAAAGCTACATTTGATAGGGTCTTCATTTCCCTCTTTTCCTCCAAGAAGAAAATCGAAGC-TGCA----AACTTTTCTCTACGTGA-GTTCTGG---GGGT-TTTTTTT-----GTCCCTTATTTCCTATCCTTTTTATCAACTCTGGAAGAATGCTGAAAGATGGTTTATACAAC-------AG----AAAAATATCAGATTTCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5382898 329 +   6154872 CCAGATATAGTATAAAGGAATGAATATGACATGAATTGGGAAAATGTCTCTTAGTAATAATTGGGGAAAGAAGAGA-CACTCAGCCATCCATTTTCCCTACAGTGTTTGACTTAAAAGAAGAGAGAAGGTATTTTATTCCAAAGTTCATAAAAGCTACATTTGATAGGGTCTTCATTTCCCTCTTTTCCTCCAAGAAGAAAATCGAAGC-TGCA----AAC--TTCTCTACGTGA-GTTCTGG---GGGT-TTTTTTT---TTGTCCCTTATTTCCTATCCTTTTTATCAGCTCTGGAAGAATGCTGAAAGACGGTTTATACAAC-------AG----AAAAATATCATATTTCAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29545909 322 + 172585720 CCAGATATAGTATAAAGGAATGAATAAGACACGAATTGGGAAAATGTCTCTTAGTAGTAATTGAGGAAAGAAGAGA-CACTCAGGCATCCATTTTCCCTACAGTATTTCATTTAAAAGAAGAGAGAAGGTATTTTATTCTACAGCTCATAGAAGCTACATTTGATAGGGTCTTCGTTTCCCTCTTTTCCACCAAGAAGAAAATCAAAGC-TACA----AACTTGTCTCTACATGA-G-TT---------T-TTTTTTT-----GTCCCTTATTTCCTATCCCTTTTATCAACTCTGGAAGAAGGCTGAAAGATGGTTTATACAAC-------AG----AAAAATATCAGATTTCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29207025 322 - 170955103 CCAGATATAGTATAAAGGAATGAATAAGACACGAATTGGGAAAATGTCTCTTAGTAGTAATTGAGGAAAGAAGAGA-CACTCAGGCATCCATTTTCCCTACAGTATTTCATTTAAAAGAAGAGAGAAGGTATTTTATTCTACAGCTCATAGAAGCTACATTTGATAGGGTCTTCGTTTCCCTCTTTTCCACCAAGAAGAAAATCAAAGC-TACA----AACTTGTCTCTACATGA-G-TT---------T-TTTTTTT-----GTCCCTTATTTCCTATCCCTTTTATCAACTCTGGAAGAAGGCTGAAAGATGGTTTATACAAC-------AG----AAAAATATCAGATTTCAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2214702 323 -   2996164 CCAGATATAGTATAAAGGAATGAATAAGACACGAATTGGGAAAATGTCTCTTAGCAGTAATTGAGGAAAGAAGAGA-CACTCAGGCATCCATTTTCCCTACAGTATTTCATTTAAAAGAAGAGAGAAGGTATTTTATTCTACAGCTCATAGAAGCTACATTTGATAGGGTCTTCGTTTCCCTCTTTTCCACCAAGAAGAAAATCAAAGC-TACA----AACTTGTCTCTACATGA-GTTT---------T-TTTTTTT-----GTCCCTTATTTCCTATCCCTTTTATCAACTCTGGAAGAAGGCTGAAAGATGGTTTATACAAC-------AG----AAAAATATCAGATTTCAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        1639 327 +    766320 CCAGATATAGTATAAAGGAATGGATGTGACACAAGTTGGCAAAATGTCTCTTAATAATAACTGGGGAAGGAAGAGA-CACTCGACCATCCATTTTCCCTACAGTGTTTGATTTAGAAG-AGAGAGAAGGTATTTTATTCCACAGCTCATAGAAGCTACATTTGATAGGGTCTTCATTTCCCTCTTTTCCACCAAGAAGAAAATCGAAGC-TGCA----AACTTTTCTCTACATGA-G-TTCTG---GGGT-TTTTTTT-----GTCCCTTATTTCCTATCCCTTTTATCAACTCTGGAGGAATGCTGAAAGATGAGTCATACAAC-------AG----ATAGTTATCAGATTCCAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28510252 324 -  71996105 CCAGATATAGTATAAAGGAATGAATAAGACACGAATTGGGAAAATGTCTCTTAGTAGTAATTGAGGAAAGAAGAGA-CACTCAGCCATCCATTTTCCCTACAGTGTTTGATTTAAAAGAAGAGAGAAGGTATTTTATTCCACAGCTCATAGAAGCTACATTTGATAGGGTCTTCATTTCCCTCTTTTCCACCAAGAAGAAAATCAAAGC-TACA----AACTTGTCTCTACATGAGGTTT---------T-TTTTTTT-----GTCCCTTATTTCCTATCCCTTTTATCAACTCTGGAAGAAGGCTGAAAGACGGTTTATACAAC-------AG----AAAAATATCAGATTTCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2223489 319 +   2316924 CCAGATATAGTATAAAGGAATGAATAAGACACGAACTGGGAAAATGTCTCTTAGTAGTAATTGAGGAAAGAAGAGA-CACTCAGGCATCCATTTTCCCTACAGTGTTTG----AAAAGCAGAGAGAAGGTATTTTATTCCACAGCTCATAGAAGCTACATTTGATAGGGTCTTCATTTCCCTCTTTTCCACCAAGAAGAAAATCAAAGC-TACA----AACTTGTCTCTACATGA-GTTT---------T-TTTTTTT-----GTCCCTTATTTCCTATCCCTTTTATCAACTCTGGAAGAAGGCTGAAAGACGGTTTATACAAC-------AG----AAAAATATCAGATTTCAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2086867 323 -   3067355 CCAGATATAGTATAAAGGAATGAATAAGACACGAATTGGGATAATGTCTCTTAGTAGTAACTGAGAAAAGAAGAGA-CACTCAGCCATCCATGTTCCCTACAGTGTTTGATTTAAAAGAAGAGAGAAGATATTTTATTCCACAGCTCATAGAAGCTACATTTGATAGGGTCTTCATTTCCCTCTTTTCCACCAA-AAGAAAATCGAAGC-TGCA----AACTTGTCTCTACATGA-GTTT---------TGTTTTTTT-----GTCCCTTATTTCCTATCCCTTTTATCAACTCTGGAAGAAGGCTGAAAGACGGTTTATACAAC-------AG----AAAAATATCAGATTTCAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171585189 331 - 171630274 CCAGATATAGTATAAAGGAGTGGATATTACATAAATTGGGAAAATGTCTCTTAGTAATAATTGGGGAAAGAAGAGA-TACTCAGCGATCCATTTTCTCTATAGTGTTTGATTTAAAAGAATAGACAAGATATTTTATTCCGTAGCTCATGGAAGCTACATAGGATAGGGTATTCATTTCCCTCTTTTCCACTAAGAAGAAAATAGAAGC--GTA----AACTTTTTTCTACATGA-GTTCTGGTTATTTT-TTTTTTT-----GTCCCTTATTTTCTATCCCTTATATCGACTCTGGAAGAATGCTGAAAGATAAGTCATACTAG-------AG----AAAAATATCAGATTCCAC
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1698245 333 -   2232465 CCAAATATATTAAAAAGGAATGAATATGAAAAAAATTAGAAAAATCTCTGCTAGTAATAA-TGGGACAAGAAGAGAGTGCTAAGCTGTCCATTTTCCCCATAGTGTTTGATTTAAAAGAAGAGAGAAAATATTCTATTCCATGGCTCATAAAAGCTACATTTGATAGGGTCCCCATTTTGTTCTTTTCCACCAAGTAGAAGATCAAAAC-TCCA----ATTTTTTTTCTAATTAG-TTCCCTA------T-TTTTTTA-----GTCCTATATCTCTGATCCCTCTTTTCATCTTTAGAAGAATGCTGAAAGACTGGTCATACAACAAATAAAAG----AAATATGACATCTTCCAC
i otoGar3.GL873742         C 0 I 3
s dasNov3.JH570037            294763 279 -    859332 CCAGGCAGA-CATGAAGGATCGGGTGTGACTAAAGTTAGCAAAA---------------------------------GTCTAAGTCTTCCATTTTCTTCATAATGCCTGATTCCAAAGAAGAGACAGTAT-TTTTAATCCACAGCCCATAAAAGCCACCTTTGATAGGGT---CACTTCACTCTTTTCCACTAAGAATAAACTCAAACCATGGAGCTCAACTTTTCTCTGCATGA-G------------T-CCTTTTG-----CTCCTATA--------CCCTTCTAC---CTCTAGGAGAATGCTGAAA-CTGGGTTATACAAC-------AGATACAGAAATA-CAGCTGCCAC
i dasNov3.JH570037         C 0 I 511
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1184508.000000
s hg38.chr6_GL000254v2_alt    365214 211 +   4827813 CTTTTAATTACTGTAGTAAGGA--AGTCAGGCAGCTGCATTA-GGAAAGAAAATTATACCTGCATTAGCAAAAGTATCCACAACATTTGAGTTCAAGTATCTTACAGA---------ATATTACCTTTCAACCTAGCGAAATT--------TTTAAAAAAATTCTTGCAATTT---------------------------------------------------TTCCATGATTTCTCAA---------------------AAGG-T-AATGATCA------------TTT-CATTATCAACAATATGGAAAAGTGTA
s panTro5.chr6              29339842 211 + 175400573 CTTTTAATTACTGTAGTAAGGA--AATCAGGCAGCTGCATTA-GGAAAGAAAATTATACCTGCATTAGCAAAAGTATCCACAGCATTTGAGTTCAAGTATCTTACAGA---------ATATTACCTTTCAACCTAGCGAAATT--------TTTAAAAAAATTCTTGCAATTT---------------------------------------------------TTCCATGATTTCTCAA---------------------AAGG-T-AATGATCA------------TTT-CATTATCAACAATATGGAAAAGTGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29585594 211 + 173848474 CTTTTAATTACTGTAGTAAGGA--AATCAGGCAGCTGCATTA-GGAAAGAAAATTATACCTGCATTAGCAAAAGTATCCACAGCATTTGAGTTCAAGTATCTTACAGA---------ATATTACCTTTCAACCTAGCGAAATT--------TTTAAAAAAATTCTTGCAATTT---------------------------------------------------TTCCATGATTTCTCAA---------------------AAGG-T-AATGATCA------------TTT-CATTATCAACAATATGGAAAAGTGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5383227 211 +   6154872 CTTTTAATTACTGTAGTAAGGA--AATCAGGCAGCTGCATTA-GGAAAGAAAATTATACCTGCATTAGCAAAAGTATCCACAGCATTTGAGTTCAAGTATCTTACAGA---------ATATTACCTTTCAACCTAGCGAAACT--------TTTTAAAAAATTCTTGCAATTT---------------------------------------------------TTCCATGATTTCTCAA---------------------AAGG-T-AATGATCA------------TTT-CATTATCAACAGTATGGAAAAGTGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29546231 208 + 172585720 CTTTTAATTACTGTAGTAAGGA--ACTCAGGCAGCTGCGTTA-GGAAAGAAAATTATGCCTGCATTAGCAAAAATAT---CAGCATTAGAGTTCAAGTATCTTACAGA---------ATATTACCTTTAATCCTAAGGAAATT--------AAAAAAAAAATTCTTGCAATTT---------------------------------------------------TTTCATGATTTCTCAA---------------------AAGG-T-AATAATCA------------TTC-CATTACCAATAATATGGAAAAGTGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29207347 205 - 170955103 CTTTTAATTACTGTAGTAAGGA--ACTCAGGCAGCTGCGTTA-GGAAAGAAAATTATGCCTGCATTAGCAAAAATAT---CAGCATTAGAGTTCAAGTATCTTACAGA---------ATATTACCTTTAATCCTAAGGAAATT--------AAAAAAAAAATTCTTGCAATTT---------------------------------------------------TTTCATGATTTCTCAA---------------------AAGG-T-AATA---A------------TTC-CATTACCAATAATATGGAAAAGTGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2215025 208 -   2996164 CTTTTAATTACTGTAGTAAGGA--ACTCAGGCAGCTGCGTTA-GGAAAGAAAATTATGCCTGCATTAGCAAAAATAT---CAGCATTAGAGTTCAAGTATCTTACAGA---------ATATTACCTTTAATCCTAAGGAAATT--------AAAAAAAAAATTCTTGCAATTT---------------------------------------------------TTTCATGATTTCTCAA---------------------AAGG-T-AATAATCA------------TTC-CATTACCAATAATATGGAAAAGTGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        1966 210 +    766320 TTTTTAATTACTGTAATAAGGA--AC-CAGGCAGCTGCAATA-GAAAAGAAAATTAGGTCTACATCAGCAAAAGTATACACAGCATTTGAGTTCAAGTATCTTATGGC---------ATATTACCTTTAATCCTAGGGAGATT---------TTAAAAAAATTCTTGGAATTT---------------------------------------------------TCCCATGATTTCTCAA---------------------AAGGTT-AATGCTCA------------TTC-CATTACCAACAATATGGAAAAATGTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28510576 208 -  71996105 CTTTTAATTACTGTAGTAGGGA--ACTCAGGCAGCTACGTTA-GGAAAGAAAATTATGCCTGCATTAGCAAAAATAT---CAGCATTAGAGTTCAAGTATCTTACAGA---------ATATTACCTTTCATCCTAGGGAAATT--------TTTAAAAAAATTCTTGCAATTT---------------------------------------------------TTTCAGGATTTCTCAA---------------------AAAG-T-AATAATCA------------TTC-CATTACCAACAATATGGAAAAGTGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2223808 208 +   2316924 CTTTTAATTACTGTAGTAAGGA--ACTCAGGCAGCTGCGTTA-GGAAAGAAAATTATGCCTGCATTAGCAAAAATAT---CAGCATTAGAGTTCAAGTATCTTACAGA---------ATATTACCTTTCATCCCAGGGAAATT--------TAAAAAAAAATTCTTGCAATTT---------------------------------------------------TTTCATGATTTCTCAA---------------------AAGA-T-AATAATCA------------TTC-CATTACCAATAATATGGAAAAGTGTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2087190 209 -   3067355 CTTTTAATTACTGTAGTAAGGA--ACTCAGGCAGCTGCGTTA-GGAAAGAAAATTATGCCTGCATTAGCAAAAATAT---CAGCATTAGAGTTCAAGTATCTTACAGA---------GTATTACCTTTCATCCTAGGGAAATTT-------AAAAAAAAAATTCTTGCAATTT---------------------------------------------------TTTCATGATTTCTCAA---------------------AAAG-T-AATAATCA------------TTC-CATTACCAACAATATGGAAAAGTGTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171585520 210 - 171630274 CTTTTAATTACTGTAGTAAGGA--ACTCAGGCAGCTGCATTT-GGAAAGAAAGTTATGCCTGCGTTCACAAAAGTATCCACAGTGTTTGAGTTCGAGTGTCATATGGA---------ATCTTACCTTTCATCCTAAGGAGATT---------TAAAAAATATTTTTGGAATTT---------------------------------------------------TTCCATGATTTCTCAA---------------------AAGG-CGAATGATCA-------------TC-CATTACCAATGACATGGAAAAGTGTA
i calJac3.chr4             C 0 I 253
s otoGar3.GL873742           1698581 220 -   2232465 CTTTAAATTAATGTAATAAGGA--ATTCAGGCAGCTGCATTATGGGAAGAAAATAATGTCTGCATCACAGAAAGCATCCATAGTACTTAAGTTCAAGTATCTCATGGATATGTGCTTGTATTACTTCTCATTTTAGGGAAATT---------AAAAAAAATTCCTTGGAATTT---------------------------------------------------TTCCATTACCTCTCAA---------------------AAGGTT-AATGATCA------------TTTATATTACCAAGAATATGCAGAGGTG--
i otoGar3.GL873742         I 3 C 0
s dasNov3.JH570037            295553 293 -    859332 CTTTTATTTGATGTAGTAAGGGGTATTCAGGCAGCTATAA-A-GGGAAGAAAG------CTGCATCAGAGGCAGTAACC-CAGTGTTTGAGTTCAAATTTTATGTGCT---------ATATTACTTTCAA----AAGGCAGTGTCCACTAAAATAAAGGACTCTTTATCATTTACTATTTGACAGAAGATATTTATTTAAAAAGCATAGTGCTGGATGGTTATCCTGGATGGTTTCTGAACCACAGAACATAATATGGAATATTG-T-AACAATCAGCTAATGATTCTTTA-TATTACCAATTATATTAAAGGGTGTA
i dasNov3.JH570037         I 511 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1266231.000000
s hg38.chr6_GL000254v2_alt    365425 194 +   4827813 CAGATA--TCTTTGTACCTGTCTGGAGCATCTGCACAGACTTGGCCCAAGTTCAACGTTCCTAGCTCTCCAGCTGTAACTCAACTAATTAGGCAAACCCTTACATCTTTTTCAAGAGTCAAGATTAGAATATTTGAGTTGTTAAAAGTTTTTCAAAAC-------ACTGAAGGTGAGTTGGGTGTAAATAAATTTGTCTTTTG
s panTro5.chr6              29340053 194 + 175400573 CAGATA--TCTTTGTACCTATCTGGAGCATTTGCACAGACTTGGCCCAAGTTCAACGTTCCTAGCTCTCCAGCTGTAACTCAACTAATTAGGCAAACCCTTACATCTTTTTCAAGAGTCAAGATTAGAATATTTGAGTTGTTAAAAGTTTTTCAAAAC-------ACTGAAGATGAGTTGGGTGTAAATAAATTTGTCTTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29585805 194 + 173848474 CAGATA--TCTTTGTACCTGTCTGGAGCATTTGCACAGACTTGGCCCAAGTTCAACGTTCCTAGCTCTCCAGCTGTAACTCAACTAATTAGGCAAACCCTTACATCTTTTTCAAGAGTCAAGATTAGAATATTTGAGTTGTTAAAAGTTTTTCAAAAC-------ACTGAAGGTGAGTTGGGTGTAAATAAATTTGTCTTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5383438 194 +   6154872 CAGATA--TCTTTGTACCTGTCTGGAGCATTTGCACAGACTTGGCCCAAGTTCAACGTTCCTAGCTCTCCAGCTGTAACTCAACTAATTAGGCAAACCCTTACATCTTTTTCAAGAGTCAAGATTAGAATATTTGAGTTGTTAAAAGTTTTTCAAAAC-------ACTGAAGGTGAGTTGGGTATAAATAAATTTGTCTTTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29546439 194 + 172585720 CAGATA--TCTTTGTACCTGTCTGGAGCATTTGCACAGACTTAGCCCAAGTTCAACGTTCCTAGTTCTCCAGCTGTAACTCAACTAATTGCGCAAACCTTTACATCTTTTTCAAGAGTGAAGATTAGAATATTTGAGTCGCTAAAAGTTTTTCAGAAC-------ACTGAAGGTGAGTCAGGTATAAATAAATTTGTCTTTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29207552 194 - 170955103 CAGATA--TCTTTGTACCTGTCTGGAGCATTTGCACAGACTTAGCCCAAGTTCAACGTTCCTAGTTCTCCAGCTGTAACTCAACTAATTGCGCAAACCTTTACATCTTTTTCAAGAGTGAAGATTAGAATATTTGAGTCGCTAAAAGTTTTTCAGAAC-------ACTGAAGGTGAGTCAGGTATAAATAAATTTGTCTTTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2215233 194 -   2996164 CAGATA--TCTTTGTACCTGTCTGGAGCATTTGCACAGACTTAGCCCAAGTTCAACGTTCCTAGTTCTCCAGCTGTAACTCAACTAATTGCGCAAACCTTTACATCTTTTTCAAGAGTGAAGATTAGAATATTTGAGTCGCTAAAAGTTTTTCAGAAC-------ACTGAAGGTGAGTCAGGTATAAATAAATTTGTCTTTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        2176 192 +    766320 CAG-TA--TCTTTGTACCTGTCTGGAGCATTTGCATAGATTTGGCCCGAGTTTAATGTTCCTAGCTCTCCAGCTGTAACTCGACCAATTAGGCAACTCCTTACATCTTTTTCAAGAGTCAAGATTACAATATTTGAGT-ATTAAAAGTTTTTCAAAAC-------ACTGAAGGTGAGTCGGGTGTAGATAAATTTGTCTTTTG
i cerAty1.NW_012002711v1   C 0 I 319
s chlSab2.chr17             28510784 194 -  71996105 CAGATA--TCTTTGTACCTGTCTGGAGCATTTGCACAGACTTGGCCCAAGTTCAACGTTCCTAGTTCTCCAGCTGTAACTCAACTAATTGCGCAAACCTTTACATCTTTTTCAAGAGTGAAGATCAGAATATTTGAGTCGTTAAAAGTTTTTCAGAAC-------ACTGAAGGTGAGTCGGGTGTAAATAAATTTGTCTTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2224016 194 +   2316924 CAGATA--TCTTTGTACCTGTCTGGAGCATTTGCACAGACTTAGCCCAAGTTCAACGTTCCTAGTTCTCCAGCTGTAACTCAACTAATTGCGCAAACCTTTACATCTTTTTCAAGAGTGAAGATTAGAATATTTGAGTCGTTAAAAGTTTTTCAGAAC-------ACTGAAGGTGAGTCAGGTATAAATAAATTTGTCTTTTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2087399 194 -   3067355 CAGATA--TCTTTGTACCTATCTGGAGCATTTGCACAGACTTGGCCCAAGTTCAACATTCCTACTTCTCCAGTCATAACTCAACTCATTAGGCAAACCTTTACATCTTTTTCAAGAGTGAAGATTAGAATATTTGAGTTGTTAAAAGTTTTTCAGAAC-------CCTGAAGGTGAGTCGGGTGTAAATAAATTTGTCTTTTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171585983 196 - 171630274 CAGGTACGTCTTTGTACCTATCCGGAGCATTTGCAAAGACTTGGCCCAAGTGCAATGTTCCTAGCTCTCCAGCTGTAACTCAATTAACTAGGCAATCCCTTACATCTTTTTCAAGAGTCAACATTACAATATTTGAGTTATTAAAAGGTTTTCAAAAC-------ACTGAAGGTGAGTCGGGTGTAAATAAATTTGTCTTTTG
i calJac3.chr4             I 253 C 0
s otoGar3.GL873742           1698801 185 -   2232465 ----------TTTATTCCTGCCTGAATCAGTCTCACTGGTTTGGCCCAAGATCAGTGTTCCTAGATCTCTAGCTGTAATTCAACTAATTAGAC-ACTCCTTACACCTTTTTCAAGGGTACATATCATAGTATTTCAGCCTTTAAATGTTCTTCAATAG-------ACTGAAGGTGAGTCTGTTGTGGTTGAATTTGTCTTTTG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            295846 191 -    859332 CAGAAA--TCCTTGAGCTTGCCTGAATTAT---------CTTGGGTCAGATTTAATGTCCCTAGTTCTCTAGCTGTAACACAACTAATTAGATACA-CTTTACCTCCATTTCAAAAGTCACGATTACAATATTTGGACAATTAAGAGTTCTCCATAAAAGAGGTGATTGCAGGTAGGTGAGGTGTGTTTGGGTTTGTCTTTTG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=10651.000000
s hg38.chr6_GL000254v2_alt    365619 2 +   4827813 TC
s panTro5.chr6              29340247 2 + 175400573 TC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29585999 2 + 173848474 TC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5383632 2 +   6154872 TC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29546633 2 + 172585720 TC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29207746 2 - 170955103 TC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2215427 2 -   2996164 TC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28510978 2 -  71996105 TC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2224210 2 +   2316924 TC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2087593 2 -   3067355 TC
i colAng1.NW_012115566v1   C 0 I 48071
s calJac3.chr4             171586179 2 - 171630274 CC
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1698986 2 -   2232465 CC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            296037 2 -    859332 TT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e cerAty1.NW_012002711v1        2368 319 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=15939.000000
s hg38.chr6_GL000254v2_alt    365621 4 +   4827813 ATAT
s panTro5.chr6              29340249 4 + 175400573 ATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29586001 4 + 173848474 ATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5383634 4 +   6154872 ATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29546635 4 + 172585720 ATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29207748 4 - 170955103 ATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2215429 4 -   2996164 ATAT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28510980 4 -  71996105 ATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2224212 4 +   2316924 ATAT
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171586181 3 - 171630274 ATA-
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1698988 4 -   2232465 TTAT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            296039 4 -    859332 ATAT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e colAng1.NW_012115566v1     2087595 48071 -   3067355 I
e cerAty1.NW_012002711v1        2368 319 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=30297.000000
s hg38.chr6_GL000254v2_alt    365625 8 +   4827813 TTTATCAG-
s panTro5.chr6              29340253 8 + 175400573 TTTATCAG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29586005 8 + 173848474 TTTATCAG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5383638 8 +   6154872 TTTATCAG-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29546639 8 + 172585720 TTTATCAG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29207752 8 - 170955103 TTTATCAG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2215433 8 -   2996164 TTTATCAG-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        2687 8 +    766320 TTTATCAG-
i cerAty1.NW_012002711v1   I 319 C 0
s chlSab2.chr17             28510984 8 -  71996105 TTTATCAG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2224216 8 +   2316924 TTTATCAG-
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1698992 7 -   2232465 TCTATCA--
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            296043 9 -    859332 CCTGTCTAG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e calJac3.chr4             171586184 0 - 171630274 C
e colAng1.NW_012115566v1     2087595 48071 -   3067355 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=515306.000000
s hg38.chr6_GL000254v2_alt    365633 70 +   4827813 AGAGTATGAGAGGAAGAGTTGGCTGTGGCAGGAGGGGAGCAGAAGGGGGATGGCAATGCTATTTAGGAAT
s panTro5.chr6              29340261 70 + 175400573 AGAGTATGAGAGGAAGAGTTGACTGTGGCAGGAGGGGAGCAGAAGGGGGATGGCAATGCTATTTAGGAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29586013 70 + 173848474 ACAGTATGAGAGGAAGAGTTGACTGTGGCAGGAGGGGAGCAGAAGGGGGATGGCAATGCTATTTAGGAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5383646 70 +   6154872 AGAGTATGAGAGGAAGAGTTGGCTGTGGCAGGAGGGGAGCAGAAGGGGGATAGCAATGCTATTTAGGAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29546647 70 + 172585720 AGAGTATGAGAGGAAGAGTTGGCTGTGGCAGGAGGGGAGCAGAAGGGGGATGGCAATGCTATTTAGGAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29207760 70 - 170955103 AGAGTATGAGAGGAAGAGTTGGCTGTGGCAGGAGGGGAGCAGAAGGGGGATGGCAATGCTATTTAGGAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2215441 70 -   2996164 AGAGTATGAGAGGAAGAGTTGGCTGTGGCAGGAGGGGAGCAGAAGGGGGATGGCAATGCTATTTAGGAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        2695 70 +    766320 AGAGTACAAGAGGAAGAGTTGGCTGTGGCAGGAGGGGAGCAGAAGGGGGATGGCAATGCTATTTAGGAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28510992 70 -  71996105 AGAGTATGAGAGGAAGAGTTGGCTGTGGCAGGAGGGGAGCAGAAGGGGGATGGCAATGCTATTTAGGAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2224224 70 +   2316924 AGAGTATGAGAGGAAGAGTTGGCTGTGGCAGGAGGGGAGCAGAAGGGGGATGGCAATGCTATTTAGGAAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2135666 70 -   3067355 AGAGTACAAGAGGAAGAGTTGGCTGTGGCAGGAGGGGAGCAGAAGGGGGATGGCAATGCTATTTAGGAAT
i colAng1.NW_012115566v1   I 48071 C 0
s calJac3.chr4             171586184 60 - 171630274 ----------AGGAAAAGTTGGCTTTGGCAGGAAGGGAGCAAAAGGGGGATGGCAATGCTATTTAGGAAT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1698999 70 -   2232465 AGAGTATGAGAGGGAGCGTTGGCTGTGGCAGGAAAAGAGCAGAAGGGGCACAGCAAAGCAATTTAGGAAT
i otoGar3.GL873742         C 0 I 536
s dasNov3.JH570037            296052 66 -    859332 AGAGTATGAGAAGAA---TTGGCTGCGGCAGTAAGGAAGCAGAAGGGGCAT-GTAAAACAATTTAGGAAT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=8281.000000
s hg38.chr6_GL000254v2_alt    365703 1 +   4827813 A
s panTro5.chr6              29340331 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29586083 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5383716 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29546717 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29207830 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2215511 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        2765 1 +    766320 A
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28511062 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2224294 1 +   2316924 A
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2135736 1 -   3067355 A
i colAng1.NW_012115566v1   C 0 I 281
s calJac3.chr4             171586244 1 - 171630274 A
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1699605 1 -   2232465 A
i otoGar3.GL873742         I 536 C 0
s dasNov3.JH570037            296118 1 -    859332 A
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=21175.000000
s hg38.chr6_GL000254v2_alt    365704 4 +   4827813 TTGA
s panTro5.chr6              29340332 4 + 175400573 TTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29586084 4 + 173848474 TTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5383717 4 +   6154872 TTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29546718 4 + 172585720 TTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29207831 4 - 170955103 TTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2215512 4 -   2996164 TTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        2766 4 +    766320 TTGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28511063 4 -  71996105 TTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2224295 4 +   2316924 TTGA
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171586245 4 - 171630274 TTGG
i calJac3.chr4             C 0 I 520
s otoGar3.GL873742           1699606 4 -   2232465 TTAT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            296119 4 -    859332 TTTA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e colAng1.NW_012115566v1     2135737 281 -   3067355 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=7098.000000
s hg38.chr6_GL000254v2_alt    365708 1 +   4827813 A
s panTro5.chr6              29340336 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29586088 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5383721 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29546722 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29207835 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2215516 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        2770 1 +    766320 A
i cerAty1.NW_012002711v1   C 0 I 259
s chlSab2.chr17             28511067 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2224299 1 +   2316924 A
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171586769 1 - 171630274 A
i calJac3.chr4             I 520 C 0
s otoGar3.GL873742           1699610 1 -   2232465 A
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            296123 1 -    859332 A
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e colAng1.NW_012115566v1     2135737 281 -   3067355 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=9693.000000
s hg38.chr6_GL000254v2_alt    365709  10 +   4827813 ---------------------------------------------------------------------------------------------------GAAAACCCAG----------
s panTro5.chr6              29340337  10 + 175400573 ---------------------------------------------------------------------------------------------------GAAAACCCAG----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29586089  10 + 173848474 ---------------------------------------------------------------------------------------------------GAAAACCCAG----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5383722  10 +   6154872 ---------------------------------------------------------------------------------------------------GAAAACCCAG----------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29546723  10 + 172585720 ---------------------------------------------------------------------------------------------------GAAAACCCAG----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29207836  10 - 170955103 ---------------------------------------------------------------------------------------------------GAAAACCCAG----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2215517  10 -   2996164 ---------------------------------------------------------------------------------------------------GAAAACCCAG----------
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28511068  10 -  71996105 ---------------------------------------------------------------------------------------------------GAAAACCCAG----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2224300  10 +   2316924 ---------------------------------------------------------------------------------------------------GAAAACCCAA----------
i manLeu1.NW_012104165v1   C 0 C 0
s calJac3.chr4             171586770  10 - 171630274 ---------------------------------------------------------------------------------------------------TAAAACCCAG----------
i calJac3.chr4             C 0 I 1
s otoGar3.GL873742           1699611  10 -   2232465 ---------------------------------------------------------------------------------------------------GAAAACTAAA----------
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            296124 119 -    859332 ATGGTGGGTCACTATGTCTTATAGAAATAAGTATATAATAAAAGACAGTATTTGTCTTTCCCACAAAAGAATGGTCATACACAAATAAAAGAGGCAACTAAAAACCAAACTATTGGCAC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e colAng1.NW_012115566v1     2135737 281 -   3067355 I
e cerAty1.NW_012002711v1        2771 259 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=31709.000000
s hg38.chr6_GL000254v2_alt    365719 6 +   4827813 AAATAT
s panTro5.chr6              29340347 6 + 175400573 AAATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29586099 6 + 173848474 AAATAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5383732 6 +   6154872 AAATAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29546733 6 + 172585720 AAATAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29207846 6 - 170955103 AAATAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2215527 6 -   2996164 AAATAC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28511078 6 -  71996105 AAATAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2224310 6 +   2316924 AAATAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2136018 6 -   3067355 AAATAC
i colAng1.NW_012115566v1   I 281 C 0
s calJac3.chr4             171586781 6 - 171630274 ATATAC
i calJac3.chr4             I 1 C 0
s otoGar3.GL873742           1699621 5 -   2232465 -AACAT
i otoGar3.GL873742         C 0 I 2
s dasNov3.JH570037            296243 6 -    859332 ATATAT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e cerAty1.NW_012002711v1        2771 259 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=31754.000000
s hg38.chr6_GL000254v2_alt    365725 5 +   4827813 AAATT
s panTro5.chr6              29340353 5 + 175400573 AAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29586105 5 + 173848474 AAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5383738 5 +   6154872 AAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29546739 5 + 172585720 AAATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29207852 5 - 170955103 AAATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2215533 5 -   2996164 AAATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        3030 5 +    766320 aaatt
i cerAty1.NW_012002711v1   I 259 C 0
s chlSab2.chr17             28511084 5 -  71996105 AAATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2224316 5 +   2316924 AAATC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2136024 5 -   3067355 AAATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171586787 5 - 171630274 AAATT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1699628 5 -   2232465 AAGTT
i otoGar3.GL873742         I 2 C 0
s dasNov3.JH570037            296249 5 -    859332 CAATT
i dasNov3.JH570037         C 0 I 130
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=264518.000000
s hg38.chr6_GL000254v2_alt    365730 40 +   4827813 ATAAGTTGTGACTCAGAATTTAAAGTATAGTTCAGTTATT
s panTro5.chr6              29340358 40 + 175400573 ATAAGTTGTGACTCAGAATTTAAAGTATAGTTCAGTTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29586110 40 + 173848474 ATAAGTTGTGACTCAGAATTTAAAGTATAGTTCAGTTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5383743 40 +   6154872 ATAAGTTGTGATTCAGAATTTAAAGTATAGTTCAGTTATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29546744 40 + 172585720 ATAAATTGCGACTCAGAATGTAAAGTATAGTTCAGTTATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29207857 40 - 170955103 ATAAATTGCGACTCAGAATGTAAAGTATAGTTCAGTTATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2215538 40 -   2996164 ATAAATTGCGACTCAGAATGTAAAGTATAGTCCAGTTATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        3035 40 +    766320 ataaattgtgactcaaaatttaaagtataGTTCAGTTATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28511089 40 -  71996105 ATAAATTGTGACTCAGAATTTAAAGTATAGTTCAGTTATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2224321 40 +   2316924 ATAAATTGTGACTCAGAATTTAAAGTATAGTTCAGTTATT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2136029 40 -   3067355 ATAAATTGTGACTCAGAATTTAAAGTATAGTTCAGCTATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171586792 39 - 171630274 ACAAATTGTGACTCAGAATTTAAAATATACTTCA-TTATT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1699633 38 -   2232465 ATAAACTATGACTCAGAATTTAAATTCTATAT--GTTATT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            296384 40 -    859332 ATAAATTATGACCCAGAACATAAATGATGTCTCAGTTATT
i dasNov3.JH570037         I 130 C 0
e canFam3.chr35             26123994 2185 +  26524999 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=308317.000000
s hg38.chr6_GL000254v2_alt    365770 51 +   4827813 GGCCTAAAGCATATAAAATTTTTTAGAAACCACATTTAAGTCTTC---TTGTCC
s panTro5.chr6              29340398 51 + 175400573 GGACTAAAGCATATAAAATTTTTTAGAAACCATGTTTAAGTCTTC---TTGTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29586150 51 + 173848474 GGACTAAAGCATATAAAATTTTTTAGAAACCATGTTTAAGTCTTC---TTGTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5383783 51 +   6154872 GGCCTAAAGCATATAAAATTTTTTAGAAACCATGTTTAAGTCTTC---TTGTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29546784 51 + 172585720 GGCCTAAAGCATATAAAATGTTTTAGAAACCATGTTTAAGTCTTC---TTATCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29207897 51 - 170955103 GGCCTAAAGCATATAAAATGTTTTAGAAACCATGTTTAAGTCTTC---TTATCC
i macFas5.chr4             C 0 I 61123
s macNem1.NW_012011356v1     2215578 51 -   2996164 GGCCTAAAGCATATAAAATGTTTTAGAAACCATGTTTAAGTCTTC---TTATCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        3075 51 +    766320 GGCCTAAAGCATATAAAATTTTGTAGAAACCATGTTTAAGTCTTC---TTGTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28511129 51 -  71996105 GGCCTAAAGCATATAAAATTTTTTAGAAACCATGTTTAAGTCTTC---TTATCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2224361 51 +   2316924 GGCCTAAAGTATATACAATTTTTTAGAAACCATGTTTAAGTCTTC---TTATCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2136069 51 -   3067355 GGCCTAAAGCATATAAAATTTTGTAGAAACCATGTTTAAGTCTTC---TTGTCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171586831 49 - 171630274 GACCTAAAGCATATAAGAGTTTGTGGACACTGTGTTTAAGTCTTC---TTTT--
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1699671 53 -   2232465 ATCTTAAATCATATGACGT-TTGTAGAAACTATGTTCAAAAATCCCAGTTTTCC
i otoGar3.GL873742         C 0 I 1
s canFam3.chr35             26126179 51 +  26524999 gatCTAAACCACATGAAATTTTGTGAAAACTGTTCTTCTATGCTA---TTGTTC
i canFam3.chr35            I 2185 I 1
s dasNov3.JH570037            296424 42 -    859332 GTCCTAGATCAGATCAAATTGTGTGGAAACTCTTTTCAAGCC------------
i dasNov3.JH570037         C 0 C 0
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=6600.000000
s hg38.chr6_GL000254v2_alt    365821 1 +   4827813 C
s panTro5.chr6              29340449 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29586201 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5383834 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29546835 1 + 172585720 C
i rheMac8.chr4             C 0 I 60995
s macFas5.chr4              29269071 1 - 170955103 C
i macFas5.chr4             I 61123 C 0
s macNem1.NW_012011356v1     2215629 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        3126 1 +    766320 C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28511180 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2224412 1 +   2316924 C
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2136120 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            296466 1 -    859332 C
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26126230 1 +  26524999 I
e otoGar3.GL873742           1699724 1 -   2232465 I
e calJac3.chr4             171586880 0 - 171630274 C
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=555710.000000
s hg38.chr6_GL000254v2_alt    365822 101 +   4827813 TGTCTAACAATCCTGTGTTATACATTCTTTCAATTTCAAATGCCACATTCTGACCTCCTCT-TCACTGTTGTGCCTCAAAGCACTCTTCC---TTTCTC-TCTTAC
s panTro5.chr6              29340450 101 + 175400573 TGTCTAACAATCCTGTGTTATACATTCTTTCAATTTCAAATGCCACATTCTGACCTCCTCT-TCACTGTTGTGCCTCAAAGCACTCTTCC---TTTCTC-TCTTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29586202 101 + 173848474 TGTCTAACAATCCTGTGTTATACATTCTTTCAATTTCAAATGCCACATTCTGACCTCCTCT-TCACTGTTGTGCCTCAAAGCACTCTTCC---TTTCTC-TCTTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5383835 101 +   6154872 TGTCTAACAATCCTGTGTTATACATTCTTTCAATTTCAAATGCCACATTCTGACCTCCTCT-TCACTGTTGTGCCTCAAAGCACTCTTCC---TTTCTC-TCTTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29607831  99 + 172585720 TGTCAAACAATCC--TGTTATACATTCTTTCAACTTCAACTACCACGTTCAGACCTCCTCT-TCACTGTTGTGCATCCAAACACTGTTCC---TTTCTC-TCTTAC
i rheMac8.chr4             I 60995 C 0
s macFas5.chr4              29269072  99 - 170955103 TGTCAAACAATCC--TGTTATACATTCTTTCAACTTCAACTACCACATTCAGACCTCCTCT-TCACTGTTGTGCATCCAAACACTGTCCC---TTTCTC-TCTTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2215630 101 -   2996164 TGTCTAACAATCCTGTGTTGTACATCCTTTCAATTTCAAATGCCACATTCAGATCTCCTCT-TCACTGTTGTGCATCGAAACACTCTTCC---TTTCTC-TCTTAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        3127  99 +    766320 TGTCAAACAATCC--TGTTATATATTCTTTCAACTTCAAATACCACATTCAGACCTCCTCT-TCACTGTTGTGCATCCAAACACTGTCCC---TTTCTC-TCTTAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28511181 101 -  71996105 TGTCTAACAATCCTGTGTTATACATTCTTTCAATTTCAAATGCCACATTCAGATCTCCTCT-TCACTGTTGTGCATCGAAACACTCTTCC---TTTCTC-TCTTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2224413 101 +   2316924 TGTCTAACAATCCTGTGTTGTACATTCTTTCAATTTCAAATGCCACATTCAGATCTGCTCT-TCACTGTTGTGCATCGAAACACTCTTCC---TTTCTC-TCTTAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2136121  99 -   3067355 TGTCAAACAATCC--TGTTATACATTCTTTCAACTTCAAATACCACATTCAGACCTCCTTT-TCACTGTTGTGCATCCAAACACTGTCCC---TTTCTC-TCTTAC
i colAng1.NW_012115566v1   C 0 I 1468
s calJac3.chr4             171586880  98 - 171630274 TGTCTAACAATCC--TGTTATACAGTCTTTCAACTTCAGATACCACATTCAGAGCTCCTCC-TCACTGCTGTG-ATCCGTACACTCTCCC---TTTCTC-TCTTAC
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1699725  98 -   2232465 GTTCTTAGAGCCCTGTGATATATATTTTTTCAATTTCAAGTATCACAATTAGAGTTCCTTT-CCTCTTTTCTTCATTCAAATACCCTCATAGATTTTTC-------
i otoGar3.GL873742         I 1 C 0
s canFam3.chr35             26126231  83 +  26524999 ---------------GGCTTCATACCCTGGAGTTCCTGAGCATCGCCATTGGTTCCTGTCC-TCTCTCCTG---CTCTAAACACCCTTCT---TCTTTCCTCTTG-
i canFam3.chr35            I 1 C 0
s dasNov3.JH570037            296467  85 -    859332 ---------------TGTGAAAAACTCTT--AACCCCAAGTACCACAATCAGAGTTCTTCTCTTTCTTCTCCACTGCAAAACAGCTTCTC---TTCCTC-TCTTGT
i dasNov3.JH570037         C 0 I 1
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=181950.000000
s hg38.chr6_GL000254v2_alt    365923 59 +   4827813 ACCTCCCGGTGTTTTTGTTAGACTCTGTAA-----TCT---TTCTGTCTTCCAATA-ATA-----ATT----------ATACC
s panTro5.chr6              29340551 59 + 175400573 CCCTCCTGGTGTTTTTGTTAGACTCTGTAA-----TCT---TTCTGTCTTCCAATA-ATA-----ATT----------ATACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29586303 59 + 173848474 CCCTCCTGGTGTTTTTGTTAGACTCTGTAA-----TCT---TTCTGTCTTCCAATA-ATA-----ATT----------ATACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5383936 59 +   6154872 CCCTCCCGGTGTTTTTGTTAGACTCTGTAA-----TCT---TTCTGTCTTCCAATA-ATA-----ATT----------ATACC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29607930 53 + 172585720 CA--ACCTATGTTTTTGTCAGACTCTGTAA-----TCT---TTATATCTTCCAGTA-ATA----TAGT---------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29269171 53 - 170955103 CA--ACCTATGTTTTTGTCAGACTCTGTAA-----TCT---TTATATCTTCCAGTA-ATA----TAGT---------------
i macFas5.chr4             C 0 T 61276
s macNem1.NW_012011356v1     2215731 59 -   2996164 CCCTCCCTAGGGTTTTGTTAGACTCTGTAA-----TCT---TTTTCTCTTCCAATA-ATA-----ATTACACC----------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        3226 53 +    766320 CA--ACCTATGTTTTTGTTAGACTCTGTAA-----TCT---TTGTATCTTCCAGTA-ATA----TAGT---------------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28511282 59 -  71996105 CCCTCCCTATGGTTTTGTTAGACTCTGTAA-----TCT---TTTTCTCTTCCAATA-ATA-----ATT-----ACACC-----
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012104165v1     2224514 58 +   2316924 CCCTCCCTAGGGTTTTGTTAGACTCTGTAA-----TCT---TTTTCTCTTCCAATA-ATA-----ATT-----ACA-C-----
i manLeu1.NW_012104165v1   C 0 I 1
s colAng1.NW_012115566v1     2137688 51 -   3067355 ----ACCTATGTTTTTGGTAGACTCTGTAA-----TCT---TTATATCTTCCAGTA-ATA----TAGT---------------
i colAng1.NW_012115566v1   I 1468 C 0
s calJac3.chr4             171586978 54 - 171630274 --CCTCCTATGTCTTTGTTAGACTCT---A-----TTT---TTTTGTGTTTCAATA-ATAATTATATT---------------
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1699823 56 -   2232465 CCCTTCCTACATTTTTCTTAGATTCTCTAA-TTCTTTT---TTTTGTCTTCCAATATATT-----------------------
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26126314 62 +  26524999 TTCCCTCTGTAGTTTTCTTTAACTCTGTAA-----TTTCACTTTGGTCATGCAAAC-TTAGTTCTAGT---------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH570037            296553 63 -    859332 CCCTTCCTACGTCTTTATTTCATTCTGTTTATGTTTTT---ATTTGTCTTCAAAT--TTAGTTATATT---------------
i dasNov3.JH570037         I 1 C 0
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=41514.000000
s hg38.chr6_GL000254v2_alt    365982 10 +   4827813 CCCATGTAAC----
s panTro5.chr6              29340610 10 + 175400573 CCCATGTAAC----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29586362 10 + 173848474 CCCATGTAAC----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5383995 10 +   6154872 CCCATGTAAC----
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29607983 10 + 172585720 CTCATTCACC----
i rheMac8.chr4             C 0 T 61148
s macFas5.chr4              29207948 10 - 170955103 CCCATTTACT----
i macFas5.chr4             T 61276 C 0
s macNem1.NW_012011356v1     2215790 10 -   2996164 CCCATTTACT----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        3279 10 +    766320 CTCATTCACC----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28511342 10 -  71996105 CCCATTTACT----
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012104165v1     2224573 10 +   2316924 CCCATTTACT----
i manLeu1.NW_012104165v1   I 1 C 0
s colAng1.NW_012115566v1     2137739 10 -   3067355 CTCATTTACC----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171587032 10 - 171630274 CCTATTTAAC----
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1699879 10 -   2232465 CTCACTTACT----
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26126376 10 +  26524999 CTCACATATT----
i canFam3.chr35            C 0 C 0
s dasNov3.JH570037            296616 10 -    859332 ----TTTACTCCCC
i dasNov3.JH570037         C 0 C 0
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1369408.000000
s hg38.chr6_GL000254v2_alt    365992 226 +   4827813 TTTGGAAGCACTCTATCACTGATATCTCTACTCTATTTCA---CTTT-------------ATTAA-----TCAGCTTTGCTTATATTGTGAATTTTTATAAGTTGGTG--TGTGTGTGCATG------------TC------TGTTTAAACCTTCATTTGCATGTTATTTTATTCGTCTAGAAATAAACTGCTAGCATAAATAAATGAAT---ATCATTTAATTCTTTCTATAATCAT-ATCCAATT-------ATT------TCTTTTCAGTTCATATTAATA
s panTro5.chr6              29340620 226 + 175400573 TTTGGAAGCACTCTATCACTGATATCTCTACTCTATTTCA---CTTT-------------ATTAA-----TCAGCTTTGCTTATATTGTGAATTTTTATAAGTTGGTG--TGTGTGTGCATG------------TC------TGTTTAAACCTTCATTTGCATGTTATTTTATTCGTCTAGAAATAAACTGCTAGCATAAATAAATGAAT---ATCATTTAATTCTTTCTATAATCAT-GTTCAATT-------ATT------TCTTTTCAGTTCATATTAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29586372 226 + 173848474 TTTGGAAGCACTCTATCACTGATATCTCTACTCTATTTCA---CTTT-------------ATTAA-----TCAGCTTTGCTTATATTGTGAATTTTTATAAGTTGGTG--TGTGTGTGCATG------------TC------TGTTTAAACCTTCATTTGCATGTTATTTCATTCGTCTAGAAATAAACTGCTAGCATAAATAAATGAAT---ATCATTTAATTCTTTCTATAATCAT-GTTCAATT-------ATT------TCTTTTCAGTTCATATTAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5384005 220 +   6154872 TTTGGAAGCACTCTATCACTGATATCTCTACTCTATTTCA---CTTT-------------ATTAA-----TCAGCTTTGCTTATATTGTGAATTTTTATAAGTCG--------GTGTGCATG------------TC------TGTTTAAACCTTCATTTGCATGTTACTTTAATCGTCTAGAAATAAACTGCTAGCATAAATAAATGAat---atcatttaattctttctataatcat-attcaatt-------att------tcttttcatttcatattaata
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29546845 228 + 172585720 TTTGGAAGCATTCTATCACTGATATCTCTACTCTATTTTG---CTTT-------------ATTAA-----TCAGCTTTGCTTATATTGTGAACTTTTATAAGTTGGTG--TGTGTGTGCATAT----G------TC------TGTTTAAACCTTCATTTGCATGTTATTTTATTTGTCTAGAAATAAACTGCTAGCATAAATAAATGAAT---ATCGTTTAATTCTTTCTATAATCAT-ATCCAATT-------ATT------TCTTTTCAGTTAATATTAATA
i rheMac8.chr4             T 61148 C 0
s macFas5.chr4              29207958 228 - 170955103 TTTGGAAGCATTCTATCACTGATATCTCTACTCTATTTTG---CTTT-------------ATTAA-----TCAGCTTTGCTTATATTGTGAACTTTTATAAGTTGGTG--TGTGTGTGCATAT----G------TC------TGTTTAAACCTTCATTTGCATGTTATTTTATTTGTCTAGAAATAAACTGCTAGCATAAATAAATGAAT---ATCATTTAATTCTTTCTATAATCAT-ATCCAATT-------ATT------TCTTTTCAGTTAATATCAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2215800 228 -   2996164 TTTGGAAGCAATCTATCACTGATATCTCTACTCTATTTTG---CTTT-------------ATTAA-----TCAGCTTTGCTTATATTGTGAACTTTTATAAGTTGGTG--TGTGTGTGCATAT----G------TC------TGTTTAAACCTTCATTTGCATGTTATTTTATTTGTCTAGAAATAAACTGCTAGCATAAATAAATGAAT---ATCATTTAATTCTTTCTATAATCAT-ATCCAATT-------ATT------TCTTTTCAGTTAATATTAATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        3289 205 +    766320 TTTGGAAGCATTCTATCACCGAT-----TACTCTATTTTG---CTTT-------------ATTAA-----TCGGCTTTGTGTATATTGTGAATTTTTATAAGTTGGTG--TGTTTGTGCATAT-----------TC------TGTTTAAACTTTCATTT-----TTGTATTATTTGTCTAGAAATAAACTGCTAGCATAAATA----AAT---AGCAGTTAATTTTTTCTATAATC---ATTCAATT-------ATT------TCTTTTCAGTT------AATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28511352 228 -  71996105 TTTGGAAGCATTATATCACTGATATCTCGACTCTATTTTG---CTTT-------------ATTAA-----TCAGCTTTGCTTATATTGTGAACTTTTATAAGTTGGTG--TGTGTGTGCATAT----G------TC------TGTTTAAACCTTCATTTGCACGTTATTTTATTTGTCTAGAAATAAACTGCTAGCATAAATAAATGAAT---ATCATTTAATTCTTTCTATAATCAT-ATTCAATT-------AAT------TCTTTTCAGTTAATATTAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2224583 228 +   2316924 TTTGGAAGCATTCTATCACTGATATCTCTACTCTATTTTG---CTTT-------------ATTAA-----TCAGCTTTGCTTATATTGTGAACTTTTATAAGTTGGTG--TGTGTGTGCATAT----G------TC------TGTTTAAACCTTCATTTGCATGTTATTTTATTTGTCTAGAAATAAACTGCTAGCATAAATAAATGAAT---ATCGTTTAATTCTTTCTATAATCAT-ATTCAATT-------ATT------TCTTTTCAGTTAATATTAATA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2137749 207 -   3067355 TTTGGAAGCATTCTATCACCGAT-----TACTCTATTTTG---CTTT-------------ATTAA-----TCGGCTTTGTGTATATTGTGAATTTTTATAAGTTGGTG--TGTTTGTGCATAT-----------TC------TGTTTAAACTTTCATTTG-----TGTATTATTTGTCTAGAAATAAACTGCTAGCATAAATA----AAT---AGCAGGTAATTTTTTCTATAATCAT-ATTCAATT-------ATT------TCTTTTCAGTT------AATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171587042 222 - 171630274 TTTGGAAGCATTCTATTACTGACATCTCTATTCCATTTTA---CCTT-----------------A-----TCAGCTTTGCTTATATTGTGAATTTTTATAAGTTGGTGCATGTATGTGCATAT----G------AC------TGTTTAAACCTTCATTTGCACATTATTTTATTTGTCTAGAAATGAACTGCTAGCATAAATG----AAT---AGCATTGAGTTCTTTCTATAATCAT-ACTGAATT-------ATT------TATTTTCAGTCAATATTAACA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1699889 227 -   2232465 TTTGAAAACATTTCATCACTGATTTCTCTAATCTACTTTATTTCTTT-------------GCTAA-----TCAGCCTTATTCATTTTGTGAG-TATTATGAGTTGGGG---GTGTGTGCATGT-----------TCATGTGTTATTTATACTTACATTTGCATGTTATTT---TTATCTAGAAATAAGCTACTAGCACACATAA---ACT---AACATTTTATTCTTTCTATAATCAT-ATTCAAGT-------AA-------TATTTTTGGCTGATATTAACA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26126386 253 +  26524999 GTTGGTAGCATGCCATCACTGGAG----GATCCTATTTCA---CTTCTC----AGTCAGGATTAAGACCTTTAGCTTAGCTCACAGTGTGAATACTCATTTTTGGGTG--TATGTGTGCACAC----ATGTGCCTT------TGCATATATTTCCAGTTGCATGCTATTT-GTTTATTTATATATAAGCTGTTAGCATAAATAAATGAATAAGAATATTTTGTTCTTCCCATAATCATAATGCAATT-------TATGTTTAATTTTTTCACCCAAAATTGATA
i canFam3.chr35            C 0 I 10295
s dasNov3.JH570037            296626 255 -    859332 TTTGGAAACATTCTATCACTGAATTCCCCATT-GATTTCA---CGTCTCTCCTTATCAGAACTAAGACATTCAGTTTTGCTCATACTGTGAATATTCCTAAATTGGTGATTGTGTGATCATGTTTGTG------TT------TGCTTACACCTCCATTTGCTTGTTATGTT-CTTGTCTAGAAATAAAC---TATCGTAGATAAATGAATTAGAATATTTTGTTCTTTCTATAATTGT-ATCAAATTGGAGTTGAAT------TCTTT--ACCCAATATTAAGG
i dasNov3.JH570037         C 0 C 0
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=25669.000000
s hg38.chr6_GL000254v2_alt    366218 3 +   4827813 TTT
s panTro5.chr6              29340846 3 + 175400573 TTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29586598 3 + 173848474 TTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5384225 3 +   6154872 ttT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29547073 3 + 172585720 TTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29208186 3 - 170955103 TTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2216028 3 -   2996164 TTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        3494 3 +    766320 TTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28511580 3 -  71996105 TTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2224811 3 +   2316924 TTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2137956 3 -   3067355 TTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171587264 3 - 171630274 TTT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1700116 3 -   2232465 TTT
i otoGar3.GL873742         C 0 I 193
s canFam3.chr35             26136934 3 +  26524999 TTT
i canFam3.chr35            I 10295 C 0
s dasNov3.JH570037            296881 3 -    859332 TAT
i dasNov3.JH570037         C 0 C 0
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=746426.000000
s hg38.chr6_GL000254v2_alt    366221 125 +   4827813 TAAAG-TGACTACCTAATTGCTCTTTA--ACATG-------GGAAGTTCCTATCTATAA----GTAAGATT-------ATTATGGCTGCAG-TTATTCCTTTCTCTGTAACTGCAAAAT-TGGAAATAGTCTGAAA-ATGC-AAAAAAA--A---------
s panTro5.chr6              29340849 125 + 175400573 TAAAG-TGACTACCTAATTGCTCTTTA--ACATG-------GGAAGTTCCTATCTATAA----GTAAGATT-------ATTATGGCTGCAG-TTATTCCTTTCTCTGTAACTGCAAAAT-TGGAAATAGTCTGAAA-ATGC-AAAAAAA--A---------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29586601 125 + 173848474 TAAAG-TGACTACCTAATTGCTCTTTA--ACATG-------GGAAGTTCCTATCTATAA----GTAAGATT-------ATTATGGCTGCAG-TTATTCCTTTCTCTGTAACTGCAAAAT-TGGAAATAGTCTGAAA-ATGC-AAAAAAA--A---------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5384228 124 +   6154872 TAAAG-TGACTACCTAATTGCTCTTTA--ACATG-------GGAAGTTCCTATCTATAA----GTAAGATT-------ATTATGGCTGCAG-TTATTCCTTTCTCTGTAACTGCAAAGT-TGGAAATAGTCTGAAA-ATGC--AAAAAA--A---------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29547076 123 + 172585720 TAAAG-TGACTACCTAATTGATTTTTA--ATATG-------GTAAATTTCTATCTATAA----GTAAGATT-------ATTATGACTGCAG-TTATTCCTTTCTCTGTAACTGCAAAAC-GGGAAATAGTCTGAAA-ATGC--AAAAAA------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29208189 124 - 170955103 TAAAG-TGACTACCTAATTGATTTTTA--ATATG-------GTAAATTTCTATCTATAA----GTAAGATT-------ATTATGACTGCAG-TTATTCCTTTCTCTGTAACTGCAAAAC-GGGAAATAGTCTGAAA-ATGC-AAAAAAA------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2216031 123 -   2996164 TAAAG-TGACTACCTAATTGATTTTTA--ATATG-------GTAAATTTCTATCTATAA----GTAAGATT-------ATTATGACTGCAG-TTATTCCTTTCTCTGTAACTGCAAAAC-GGGAAATAGTCTGAAA-ATGC--AAAAAA------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        3497 124 +    766320 TAAAG-TGACTGCCTAATTGCTTTTTA--ATATG-------GGAAATTCCTATCTGTAA----GTAAGATT-------ATTAAGACTGCTG-TTATTCCTTTCTCTGTAATTGCAAAAT-TGGAAATAGCCTGAAA-ATAT-AAAAATA------------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28511583 123 -  71996105 TAAAG-TGACTACCTAATTGATTTTTA--ACATG-------GGAAATTTCTATCTATAA----GTAGGATT-------ATTATGACTGCAG-TTATTCCTTTCTCTGTAACTGCAAAAC-TGGAAATAGTCTGAAA-ATGC--AAAAAA------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2224814 124 +   2316924 TAAAG-TGACTACCTAATTGATTTTTA--ATATG-------GTAAATTTCTATCTATAA----GTAAGATT-------ATTATGACTGTAG-TTATTCCTTTCTCTGTAACTGCAAAAAGGGGAAATAGTCTGAAA-ATGC--AAAAAA------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2137959 125 -   3067355 TAAAG-TGACTGCCTAATTGCTTTTTA--ATATG-------GAAAATTCCTATCTATAA----GTAAGATT-------ATTAAGACTGCTG-TTATTCCTTTCTCTGTAATTGCAAAAT-TGGAAATAGCCTGAAA-ATAT--AAAAATAA----------
i colAng1.NW_012115566v1   C 0 T 49749
s calJac3.chr4             171587267 124 - 171630274 TAAAG-TGACTACCTAATTACTTTTTA--ACATG-------GGAAATTTCTATCTGTAA----GTA-GATT-------ATGAAGACTGTAG-TTATTCCTTTCTCTGTAACTGCAAATT-TGGAAATAGCCTGaaa-attaaaaaaaaa------------
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1700312 137 -   2232465 TAAAA-TTACTACTGTATTGCTTTTTA--TTATG-------TGGGAAACTTATCTACACCACTGTAAGATTATGTAGGATTAAGATTGCAGTTTATTTCTTTCTCTGTTACTGCAAAAT-TGAAAATAGCCTGAAA-ATGCAGGAAAAA------------
i otoGar3.GL873742         I 193 I 4
s canFam3.chr35             26136937 125 +  26524999 TAAAGTTGTTTATTGAGTTGTTTTTCATCTCATA-------GTAAACTCTCATTTATAT----GTAAGATT-------ATTGAGGCTAGAG-ATACT-CTTTCTCTGTAACCAGAAAAC-TG-AAATAACCCGAAATATGT--AACATA------------
i canFam3.chr35            C 0 I 3
s dasNov3.JH570037            296884 127 -    859332 ------TAATTACTATTTTCATGTTAA--ACATGAAACATAATAAACTCTCAACTATGT----GTACAATT-------ATAAAGACTGCAA-TTCTTCTTTTCTCTGTTACCAAAAAAT--------AGCCTGAAA-ATGT--ATAAAA---GGGAAGTAG
i dasNov3.JH570037         C 0 C 0
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1917712.000000
s hg38.chr6_GL000254v2_alt    366346 297 +   4827813 ATCAATT--TAA----------CTTTTTAAAAT-AAAA-AATTA--TTTTCTTAAATATTGTCTTTCTGATTAT----GGAATATC-TTAGTCTTCATTTATCCAAATGTTAACTCAAGGATGTATATAAAAGAACTCAGTAACTTGAAAAGCTATTA-CTTGTATCCACAGCTGGACAAATATCTCAATGAAGCATACAAAGGAAACTGTATAAAAATTCTACTGCCATAATGGTGCACAT-----TATCTGGAATTGGGATAC-TTTTTTCTCCAATCTGTTTGCAAGTGAGCAGTTGGCAATGCATGGACAGACTTTGAGTT
s panTro5.chr6              29340974 297 + 175400573 ATCAATT--TAA----------CTTTTTAAAAT-AAAA-AATTA--TTTCCTTAAATATTGTCTTTCTGATTAT----GGAATATC-TTAGTCTTCATTTATCCAAATGTTAACTCAAGGATGTATATAAAAGAACTCAGTAACTTGAAAAGCTATTG-CTTGTATCCACAGCTGGACAAATATCTCAATGAAGCATACAAAGGAAACTGTATAAAAATTCTACTGCCATAATGGTGCACAC-----TATCTGGAATTGGGATAC-TTTTTTCTCCAATCTGTTTGCAAGTGAGCGGTTGACAATGCATGGACAGACTTTGAGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29586726 297 + 173848474 ATCAATT--TAA----------CTTTTTAAAAT-AAAA-AATTA--TTTCCTTAAATATTGTCTTTCTGATTAT----GGAATATC-TTAGTCTTCATTTATCCAAATGTTAACTCAAGGATGTATATAAAAGAACTCAGTAACTTGAAAAGCTATTG-CTTGTATCCACAGCTGGACAAATATCTCAATGAAGCATACAAAGGAAACTGTATAAAAATTCTACTGCCATAATGGTGCACAC-----TATCTGGAATTGGGATAC-TTTTTTCTCCAATCTGTTTGCAAGTGAGCGGTTGACAATGCATGGACAGACTTTGAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5384352 297 +   6154872 ATCAATT--TAA----------CTTTTTAAAAT-AAAA-AATTA--TTTTCTTAAATATTGTCTTTCTGATTAT----GGAATATC-CTAGTCTTCATTTATCCAAATGTTAACTCAAGGATGTGTATAAAAGAACTCAGTAACTTGAAAAGCTATTG-CTTGTATCCACAGCTGGACAAATATCTCAATGACGCATACAAAGGAAACTGTATAAAAATTCTACTGCCATAATGGTGCACAC-----TATCTGGAATTGGGATAC-TTTTTTCTCCAATCTGTTTGCAAGTGAGCGGTTGACAATGCATGGACAGACTTTGAGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29547199 297 + 172585720 ACCAATT--TAA----------CTTTTTAAAAT-AAAA-AATTA--TTTTCTTAAATATTATCTTTCTGATTAT----GGAATATC-TTAGTCTTGATTTATCCAAATGTTAACTCAGGGATGTATATAAAATAACTCAGTAACTTGAAAAGCTATTG-CTGGTATCCACAGCTGGAAAAATATCTCAATGAAGCATATAAAGGAAACTGCATAAAAATTCTACTGCCATAATGGTGCACAC-----TATCTGGAATTGGGATAC-TTTTTTCTCCAATATGTTTGCAAGTGAGTGGTTGACAATGCATGGACAGACTTTGAGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29208313 297 - 170955103 AACAATT--TAA----------CTTTTTAAAAT-AAAA-AATTA--TTTTCTTAAATACTATCTTTCTGATTAT----GGAATATC-TTAGTCTTGATTTATCCAAATGTTAACTCAGGGATGTATATAAAATAACTCAGTAACTTGAAAAGCTATTG-CTGGTATCCACAGCTGGAAAAATATCTCAATGAAGCATATAAAGGAAACTGCATAAAAATTCTACTGCCATAATGGTGCACAC-----TATCTGGAATTGGGATAC-TTTTTTCTCCAATATGTTTGCAAGTGAGTGGTTGACAATGCATGGACAGACTTTGAGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2216154 297 -   2996164 ACCAATT--TAA----------CTTTTTAAAAT-AAAA-AATTA--TTTTCTTAAATATTATCTTTCTGATTAT----GGAATATC-TTAGTCTTGATTTATCCAAATGTTAACTCAGGGATGTATATAAAATAACTCAGTAACTTGAAAAGCTATTG-CTGGTATCCACAGCTGGAAAAATATCTCAATGAAGCATATAAAGGAAACTGCATAAAAATTCTACTGCCATAATGGTGCACAC-----TATCTGGAATTGGGATAC-TTTTTTCTCCAATATGTTTGCAAGTGAGTGGTTGACAATGCATGGACAGACTTTGAGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        3621 292 +    766320 ATCAAAT--TAA----------CTTTTTAAAGT-AAAA-AATTA-TTTTTCATAGTTATTGTGTTCCTGATTAT----GGAATATC-ATAGTCTTCATTAATCCAAATGTTAACTCAGGGATGTATATAAAAGAACTCAGTAACTTGAGAAGCTATTG-CTTGTATCCACAGCTGGATAAATATCTCAATGAAGCATGTAAAGGGAACTGTATAAAAATTCTACTGACATTATGATGCATAC-----TGTCTGGAAGTGGGA-----TTTGTGCTCAGTCTGTTTGCTAGTGAGCTATTGACAATGCATGGACAGAC--TGAGTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28511706 297 -  71996105 ATCAATT--TAA----------CTTTTAAAAAT-ATAA-AATTA--TTTTCTTAAATATTTTCTTTCTGATTAT----GGAATATC-TTAGTCTTCATTTATCCAAATGTTAACTCAGAGATGTATATAAAATAACTCAGTAACTTGAAAAGCTATTG-CTGGTATCCACAGCTGGAAAAATATCTCAATGAAGCATATAAAGGAAACTGCATAAAAATTCTACTGTCATAATGGTGCGCAC-----TATCTGGAATTGGGGTAC-TTTTTTCTCTAATCTGTTTGCAAGTGAGCAATTGACAGTGCATGGACAGACTTTGAGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2224938 297 +   2316924 ACCAATT--TAA----------CTTTTTAAAAT-AAAA-AATTA--TTTTGTTAAATATTATCTTTCTGATTAT----GGAATATC-TTAGTCTTGATTTATCCAAATGTTAACTCAGGGATGTATATAAAATAACTCAGTAACTTGAAAAGCTATTG-CTGGTATCCACAGCTGGAAAAATATCTCAATGAAGCATATAAAGGAAACTGCGTAAAAATTCTACTGCCATAATGGTGCACAC-----TATCTGGAATTGGGATAC-TTTTTTCTCCAATATGTTTGCAAGTGAGCGGTTGACAATGCATGGACAGACTTTGAGTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2088335 297 -   3067355 ATCAATT--TAA----------CTTTTGAAAAT-ATAA-AATTA--TTTTCTTAAATATTGTCTTTCTGATTAT----GGAATATC-TTAGTCTTCATTTATCCAAATGTTAACTCAGAAATGTATATAAAATAACTCAGTAACTTGAAAAGCTATTG-CTTGTATCCACAGCTGGAAAAATATCTCAATGAAGCATATAAAGGGAACTGCATAAAAATTCTACTGTCATAATGGTGCACAC-----TATCTGGAATTGGGATAC-TTTTTTCTCCAATCTGTTTGCAAGTGAGCGGTTGACAATGCATGGACAGACTTTGAGTT
i colAng1.NW_012115566v1   T 49749 C 0
s calJac3.chr4             171587391 291 - 171630274 atcaatt--taa----------ctttttaaaataaaaa-aatta--ttttCATAAATGTTGTTTTTCTGCTGAT----AGAATATC-TTAGTCTTCATTTATCCAAATGTTAACTCAGGGATG--TATAAAAGAACTCAGCAACTTGAAAAGCTATTG-GTTGTATCCACAGCTGGACAAATATCTCGAGGAAGCTTAAAAAGGAAACTGTATAAAAATTATACTGCCA-----GTAAACAC-----TATGAGGAAGTGGGATAC-TTTTTCCTCCAATCTGTTTGCAAGTGAGTGGTTGACAATGCATGGACAGGCTTTGAGTT
i calJac3.chr4             C 0 I 303
s otoGar3.GL873742           1700453 277 -   2232465 ATAAATT--TAAGG--------TTTTTTATAAA-AAAA-AGTAT--TTTAAATGAAAATTGCCTTTCTGGTTAT----GAAATATC-TTAGTTTTTGTTTATCCAAA-GCTAACATAGGAATGTATA-AAAAGAGGTCAATCACTTGAGAAGTTATTG-ATTGTATCTGTAACAGGGCAAATATCTGAAGGAAACATAAAAAGAAAAC----TAAAAATTCTACTGCC-TTGTGGCAT----------------AAGTGGAACAC-ATTTTCCCTGAATCTGTTTGCAAATG----TTTGACAATGCATGGGAAGCCTTTGAGTT
i otoGar3.GL873742         I 4 C 0
s canFam3.chr35             26137065 296 +  26524999 ATAAATT--GAAAGATTTGTTTTTTGTAAAAAT-AAAACGGTTA-TTTTTCATGAAAATTGTCT---TGGCTAT----GGAATGTA-ATCTTCAATATTTATCCAAATACCAACTTGGGGATGCATG-AAAAGAACTCATTTTCTTGAGAAGTTATTGATTTGTATTCACAGCAGGAAAAATATTTGAATGAAACATAAAAATAAAA--GTATAAAAATGTTACTATCATAA----GAGCAG-----TATTTGGAAATGTTGTAA-GTCTTTC-CCAGTCTACTGGTCAGGGA---TTTGGAAATGAGTGGGCACCCTTTGAGTT
i canFam3.chr35            I 3 C 0
s dasNov3.JH570037            297011 274 -    859332 ATAGAGTGGTAG----------GTTTTTGTAA--AAAA-TATTATTTTTTCATGAAAATTTTCCCTTTTGTCTTGTTAGGAATATCTTTAATCTTCATTTATCCAAATGCCAACTTAGAGAG------AAAAGAACTCAGTCATTTAAGAGGTTATTG-ATTGTATCTAC--------AAATATCTGAATGAAACA-AAAAAGAAAACT--ATAAAAGTTTTGCTGCCATCATAGCATACAGAATTATATGTGGGAG-AGCATACAGTTTTCCCCCGATCAGTTGGCGAG-------------------GGGAAACCTTTGCGTT
i dasNov3.JH570037         C 0 C 0
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=8263135.000000
s hg38.chr6_GL000254v2_alt    366643 962 +   4827813 TATGCGA--TTCTTTCTTTAGGTACA--GGAAAAATAAGAATGTTGATGAAAAAAAATGCAAGTTTTGAAGACTTCTTTATTCTACTTGGATTTTCTAACTGGCCTCATCTGGAAGTAGTTCTCTTTGTGGTTATCTTGATCTTCTACTTGATAACACTGATAGGAAACCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCC-ACACTCCCATGTACTTCTTCCTTTCAAATCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTGAATCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGTACGGTTCAACTTTACTTTGTTCTCGCACTGGGAACCGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGATCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCGCTTGTTGGCTGCGGCTTCTTGGGTAAGTGGTT--TTACAACCTCAGCACTTCATTCCTCCTTTACTTTCTGGATACCCCTATGTAGACATCGCCTAGTGGATCACTTCTTCTGTGAAGTTCCAGCACTTCTGCGATTATCATGTGTTGATACCCAGGCAAATGAGCTGACCCTCATGGTCATGAGCTCCATTTTTGTTCTCATACCTCTCATCCTCATCCTCACTTCCTATGGTGCCATTGCCCGGGCTGTACTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGCTTAGGACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTT-CATTCCAGTCATGTGCATGTATCTCCAGCCACCATCAGAAAATTCTCAAGATCAAGGCAAGTTCATTGCCCTCTTTTACACTGTTGTCACACCTAGTCTTAAccctctaatctacactttcagaaacaaggatgtaagaggggcagtgaagagactaaTGGGGTGGGA
s panTro5.chr6              29341271 962 + 175400573 TATGCGA--TTCTTTCTTTAGGTACA--GGAAAAACAAGAATGTTGATGAAAAAAAATGCAAGTTTTGAAGACTTCTTTATTCTACTTGGATTTTCTAACTGGCCTCATCTGGAAGTAGTTCTCTTTGTGGTTATCTTGATCTTCTACTTGATACCACTGATAGGAAACCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCC-ACACTCCTATGTACTTCTTCCTTTCAAATCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTGAATCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGTACGGTTCAACTTTACTTTGTTCTCGCACTGGGAACTGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGATCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCGCTTGTTGGCTGCGGCTTCTTGGGTAAGTGGTT--TTACAACCTCAGCACTTCATTCCTCCTTTACTTTCTGGATACCCCTACGTAGACATCGCCTAGTGGATCACTTCTTCTGTGAAGTTCCAGCACTTCTGCGATTATCATGTGTTGATACCCATGCAAATAAGCTGACCCTCATGGTCATGAGCTCCATTTTTGTTCTCATACCTCTCATCCTCATCCTCACTTCCTATGGTGCCATTGCCCGGGCTGTACTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGCTTAGGACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTT-CATTCCAGTCATGTGCATGTATCTCCAGCCACCATCAGAAAATTCTCAAGATCAAGGCAAGTTCATTGCCCTCTTTTACACTGTTGTCACACCTAGTCTTAAccctctaatctacactctcagaaacaaggatgtaagaggggcagtgaagagactaaTGGGGTGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29587023 961 + 173848474 TATGCGA--TTCTTTCTTTAGGTACA--GGAAAAACAAGAATGTTGATG-AAAAAAATGCAAGTTTTGAAGACTTCTTTATTCTACTTGGATTTTCTAACTGGCCTCATCTGGAAGTAGTTCTCTTTGTGGTTATCTTGATCTTCTACTTGATAACACTGATAGGAAACCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCC-ACACTCCTATGTACTTCTTCCTTTCAAATCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTGAATCTCTGGGGCCCGGAAAAGACCATCTCGTATGCTGGTTGTACGGTTCAACTTTACTTTGTTCTCGCACTGGGAACCGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGATCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTTGTTTCTGCCGCTTGTTGGCTGCGGCTTCTTGGGTAAGTGGTT--TTACAACCTCAGCACTTCATTCCTCCTTTACTTTCTGGATACCCCTATGTAGACATCGCCTAGTGGATCACTTCTTCTGTGAAGTTCCAGCACTTCTGCGATTATCATGTGTTGATACCCATGCAAATGAGCTGACCCTCATGGTCATGAGCTCCATTTTTGTTCTCATACCTCTCATCCTCATCCTCACTTCATATGGTGCCATTGCCCGGGCTGTACTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGCTTAGGACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTT-TATTCCAGTCATGTGCATGTATCTCCAGCCACCATCAGAAAATTCTCAAGATCAAGGCAAGTTCATTGCCCTCTTTTACACTGTTGTCACACCTAGTCTTAAccctctaatctacactctcagaaacaaggatgtaagaggggcagtgaagagactaaTGGGGTGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5384649 961 +   6154872 TATGCGA--ATCTTTCTTTAGGTACA--GGAAAAATAAGAATGATGATGAAAAAAAATGCAAGTTTTGAAGACTTCTTTATTCTACTTGGATTTTCTAACTGGCCTCATCTGG-AGTAGTTCTCTTTGTGGTTATCTTGATCTTCTACTTGATAACACTGATAGGAAACCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCC-ACACTCCCATGTACTTCTTCCTTTCAAATCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTGAATCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGTATGGTTCAACTTTACTTTGTTCTCGCACTGGGAACCGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGATCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCGCTTGTTGGCTGCGGCTTCTTGGGTAAGTGGTT--TTACAACCTCAGCACTTCATTCCTCCTTTACTTTCTGGATACCCCTATGTAGACATCGCCTAGTGGATCACTTCTTCTGTGAAGTTCCAGCACTTCTGCGATTATCATGTGTTGATACCCATGCAAATGAGCTGACCCTCATGGTCATGAGCTCCATTTTTGTTCTCATACCTCTCATCCTCATCCTCACTTCCTATGGTGCCATTGCCTGGGCTGTACTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGCTTAGGACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTT-CATTCCAGTCATGTGCATGTATCTCCAGCCACCATCAGAAAATTCTCCTGATCAGGGCAAGTTCATTGCCCTCTTTTACACTGTTGTCACACCTAGTCTTAAccctctaatctacactctcagaaacaaggatgtaagaggggcagtgaagagactaaTGGGGTGGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29547496 962 + 172585720 TATGTGA--TTCTTTCTTTAGGTACA--GGAAAAATAAGAATGATGATGGAAAAAAATGCAAGTTTTGAAGACTTCTTTATTCTACTTGGATTTTCTAACTGGCCTCATCTGGAAGTAGTTCTCTTTGTGGTTATCTTGATCTTCTACTTGATAACACTGATAGGAAACCTGTTCATCATCATCCTATCATACCTGGACTCCCATCTCC-ACACTCCCATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGACAATCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGCTGTATGGTTCAACTTTACTTTGTTCTTGCACTGGGAACCGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCGCTTGTTGGCTGTGGCTTCTTGGGTAAGTGGTT--TTACTACCTCAGCACTTCATTCCTCCTTTACTTTCTGGATACCCCTATGTGGACATCACCTAGTGGATCACTTCTTCTGTGAAGTTCCAGCACTTCTGCGATTATCATGTGTTGATACCCATGCAAATGAGCTGACCCTCATGGTCATGAGCTCCATTTTTGTTCTTATACCTCTCATCCTCATTCTCACTTCCTATGGTGCCATTGCCTGGGCTGTAGTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGTTTGGAACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTT-CATTCCAGTCATGTGCATATATCTCCAGCCACCATCAGAAAATTCTCCTGATCAAGGCAAGTTCATTGCCCTCTTTTATACTGTTGTCACACCTAGTCTTAAccctctaatctacactctcagaaacaaggatgtaagaggggcagtgaagaggctaaTGGGGTAGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29208610 962 - 170955103 TATGTGA--TTCTTTCTTTAGGTACA--GGAAAAATAAGAATGATGATGGAAAAAAATGCAAGTTTTGAAGACTTCTTTATTCTACTTGGATTTTCTAACTGGCCTCATCTGGAAGTAGTTCTCTTTGTGGTTATCTTGATCTTCTACTTGATAACACTGATAGGAAACCTGTTCATCATCATCCTATCATACCTGGACTCCCATCTCC-ACACTCCCATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGACAATCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGCTGTATGGTTCAACTTTACTTTGTTCTTGCACTGGGAACCGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCGCTTGTTGGCTGTGGCTTCTTGGGTAAGTGGTT--TTACTACCTCAGCACTTCATTCCTCCTTTACTTTCTGGATACCCCTATGTGGACATCACCTAGTGGATCACTTCTTCTGTGAAGTTCCAGCACTTCTGCGATTATCATGTGTTGATACCCATGCAAATGAGCTGACCCTCATGGTCATGAGCTCCATTTTTGTTCTTATACCTCTCATCCTCATTCTCACTTCCTATGGTGCCATTGCCTGGGCTGTAGTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGTTTGGAACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTT-CATTCCAGTCATGTGCATATATCTCCAGCCACCATCAGAAAATTCTCCTGATCAAGGCAAGTTCATTGCCCTCTTTTATACTGTTGTCACACCTAGTCTTAAccctctaatctacactctcagaaacaaggatgtaagaggggcagtgaagaggctaaTGGGGTAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2216451 962 -   2996164 TATGTGG--TTCTTTCTTTAGGTACA--GGAAAAATAAGAGTGATGATGGAAAAAAATGCAAGTTTTGAAGACTTCTTTATTCTACTTGGATTTTCTAACTGGCCTCATCTGGAAGTAGTTCTCTTTGTGGTTATCTTGATCTTCTACTTGATAACACTGATAGGAAACCTGTTCATCATCATCCTATCATACCTGGACTCCCATCTCC-ACACTCCCATGTACTTCATCCTTTCAAACCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGACAATCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGCTGTATGGTTCAACTTTACTTTGTTCTTGCACTGGGAACCGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCGCTTGTTGGCTGTGGCTTCTTGGGTAAGTGGTT--TTACTACCTCAGCACTTCATTCCTCCTTTACTTTCTGGATACCCCTATGTGGACATCACCTAGTGGATCACTTCTTCTGTGAAGTTCCAGCACTTCTGCGATTATCATGTGTTGATACCCATGCAAATGAGCTGACCCTCATGGTCATGAGCTCTATTTTTGTTCTTATACCTCTCATCCTCATTCTCACTTCCTATGGTGCCATTGCCTGGGCTGTACTGAGCATGCAATCAACCACCGGGCTTCAGAAAGTGTTTGGAACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTT-CATTCCAGTCATGTGCATATATCTCCAGCCACCATCAGAAAATTCTCCTGATCAAGGCAAGTTCATTGCCCTCTTTTATACTGTTGTCACACCTAGTCTTAAccctctaatctacactctcagaaacaaggatgtaagaggggcagtgaagaggctaaTGGGGTAGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        3913 962 +    766320 TATGTGA--TTCTTTCTTTAGGTACA--AGAAAAAAATGAATGATGGTGGAAAAAAACACAAGTTCTGAAGACTTCTTTATTCTACTTGGATTTTCTAATTGGCCTCATCTGGAAGTAGTTCTGTTTGTGGTTATCTTGATCTTCTACCTAATGACACTGACAGGAAACCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCC-ACACTCCCATGTACTTCTTCCTTTCAAACCTTTCATTTCTGGATATCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTCAACCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTCGCACTGGGAATTGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCTGCTTGTTGGCTGCGGCTTCTTGGGTAAGTGGTT--TTACTACCTCAGCACTTCATTCTTCCTTTACTTTCTGGATATCTCTGTGTGGACATCGCCTAGTGGATCACTTCTTCTGTGAAGTTCCAGCACTTCTGCGTTTATCATGTGTTGACATCCATGCAAATGAGCTGATCCTCATGGTCATGAGCTCtatttttgttcttatacctctcattcttattctcacttcctatGGTGCCATTGCCTGGGCCGTACTGAGCATGCAATCAACCACTGGGCTTCAGAGAGTGTTTGGGACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTT-CATTCCAGTCATGTGCATGTATCTCCAGCCACCATCAGAAAATTCTCCTGATCAAGGCAAGTTCATTGCCCTCTTTTATACTGTTGTCACACCTAGTCTTAAccctctgatctacacgctcagaaacaaggatgtaagaggggcagtgaagagactaaTGGGGTGGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28512003 962 -  71996105 TATGTGA--TTCTTTCTTTAGGTACA--GGAAAAATAAGAATGATGATGGAAAAAAATGCAAGTTTTGAAGACTTCTTTATTCTACTTGGATTTTCTAACTGGCCTCATCTGGAAGTAGTTCTCTTCGTGGTTGTCTTGATCTTCTACTTGATGACACTGATAGGAAACCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCC-ACACTCCCATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATACTTCACTTGCTGGTCAATCTCTGGGGCTCGGAAAAGACGATCTCTTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTTGCACTGGGAACCGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCGCTTGTTGGCTGCGGCTTCTTGGGTAAGTGGTT--TTACTACCTCAGCACTTCATTCCTCCTTTACTTTCTGGATACCCCTATGTGGACATCGCCTAGTGGATCATTTCTTCTGTGAAGTTCCAGCACTTCTGCGATTATCATGTGTTGATACCCACGCAAATGAGTTGACCCTCATGGTCATGAGCTCCATTTTTGTTCTTATACCTCTCATTCTCATTCTCACTTCCTATGGTGCCATTACCTGGGCTGTACTGAGCACGCAATCAACCACTGGGCTTCAGAAAGTGTTTGGAACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTT-CATTCCAGTCATGTGCATATATCTCCAGCCACCATCAGAAAATTCTCCTACTCAAGGCAAGTTCATTGCCCTCTTTTATACTGTTGTCACACCTAGTCTTAAccctctaatctacactctcagaaacaaggatgtaagaggagcagtgaagaggctaaTGGGGTGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2225235 962 +   2316924 TATGTGA--TTCTTTCTTTAGGTACA--GGAAAAATAAGAATGATGATGGAAAAAAATGCAAGTTTTGAAGACTTTTTTATTCTACTTGGATTTTCTAACTGGCCTCATCTGGAAGTAGTTCTCTTTGTGGTTATCTTGATCTTCTATTTGATAACACTGATAGGAAACCTGTTCATCATCATCCTATCATACCTAGACTCCCATCTCC-ACACTCCAATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATATCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTCAATCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGTATGGTTCAACTTTACTTTGTTCTTGCACTGGGAACCACAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCGCTTGTTGGCTGCGGCTTCTTGGGTAAGTGGTT--TTACTACCTCAGCACTTCATTCCTCCTTTACTTTCTGGATACCCCTATGTGGACATCGCCTAGTGGATCATTTCTTCTGTGAAGTTCCAGCACTTCTGCGATTATCATGTGTTGATACCCATGCAAATGAGCTGACCCTCATGGTCATGAGCTCCATTTTTGTTCTTATACCTCTCATCCTCATTCTCACTTCTTATGGTGCCATTGCCTGGGCTGTACTGAGCATGCAATCAACCACCGGGCTTCAGAAAGTGTTTGGAACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTT-CATTCCAGTCATGTGCATATATCTCCAGCCACCATCAGAAAATTCTCCTAATCAAGGCAAGTTCATTGCCCTCTTTTATACTGTTGTCACACCTAGTCTTAAccctctaatctacactctcagaaacaaggatgtaagaggagcagtgaagaggctaaTGGGGTGGGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2088632 962 -   3067355 TATGTGA--TTCTTTCTTTAGGTACA--GGAAAAATAAGAATGATGATGGAAAAAAATGCAAGTTTTGAAGACTTCTTTATTCTACTTGGATTTTCTAATTGGCCTCATCTGGAAGTACTTCTCTTTGTGGTTATCTTGATCTTCTACTTGATAACACTAATAGGAAACCTGTTCATCATCATTCTGTCACACCTGGACTCCCATCTCC-ACACTCCAATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATTCCTCACTTGCTGGTCAATCTCTGGGGCCTGGAAAAGACCATCTCTTATGCTGGTTGTGTGGCTCAACTTTACTTTGTTCTTGCACTGGGAACTGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGATCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCACTTGTTGGCTGCGGCTTCTTGGGTAAGTGGTT--TTACTACCTCAGCACTTCATTCCTCCTTTACTTTCTGGATACCCCTATGTGGACATCGCCTAGTGGATCATTTCTTCTGTGAAGTTCCAGCACTTCTGCGATTATCATGTGTTGATACCCATGCAAATGAGCTGACCCTCATGGTCATGAGCTCCATTTTTGTTCTTATACCTCTCATCCTCATTCTCACTTCCTATGGTGCCATTACCTGGACTGTACTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGTTTGGAACATGTGGAGCCCATCTTGTGGTTGTATCTCTCTTTTT-CATTCCAATCATGTGCATATATCTCCAGCCACCATCAGAAAATTCTCCTAATCAAGGCAAGTTCATTGCCCTCTTTTATACTGTTGTCACACCTAGTCTTAAccctctaatctacactctcagaaacaaggatgtaagaggagcagtgaagaggctaaTGGGGTGGGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171587985 955 - 171630274 TATGTGA--TTCTTTCTTTAGGTGTA--AGGGAAAAATGAATGATGATGAAAAAAAATGCAAGTTCTGTAGACTTCTTTACTCTACTTGGATTTTCTAATTGGCCTCATCTGGAAGCAGTTCTCTTTGTGGTTATCTTGATCTTCTACTTGATGACACTGATAGGAAACCTGTTCATCACCATCCTGTCATACCTGGACTCCCATCTCC-ACACTCCCATGTACTTCTTCCTTTCAGACCTTTCATTTCTGGATCTGTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTCAATCTCTGGGACCCAGAAAAGACCATCTCTTATGCTGGCTGCATGATTCAACTTTACTTTGTTCTTGCACTGGGAACCACAGAGTGTGTCCTATTGGTGGTGATGTCCTATGACCATTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTTCTCATGCACCCTCATTTCTG---CTTGTTGGCTGTGGCTTCTTGGGTAAGTGGTT--TTACTACGTCAGCGCTTCAATCCTCCTTCAC-TTCTGGGTACCCCTGTGTGGACATCATCAAGTGGGTCA---CTTCTGTGAAGTTGCAGCACTTCTGTGATTATCATGTGTTGATACCCATGCAAATGAGCTGACCCTCATGGTCACGAGTTCCATTTTTGTTCTCATACCTCTCATCCTCATTCTCACTTCCTATGGTGCCGTTGCCCGGGCTGTACTGAGGTTGCAGTCAACTACTGGGCTTCAGAACGTGTTTAGGACATGTGGAGCCCATCTTAGGGTTGTATCTCTCTTTTT-CATTCCGGCCAAGTGCATATATCTCCAGCCACCATCAGAAAATTCTCCTGATTGAGGCAAGTTTATCGCTGTCTTTTATACAGTAGTCACACCTAGTCTTAACCCTCTAATCTAGACTCTGAGAAACAAGGATGTAAGAGGAGCAGTGAAGATACTAATGGGGTGGGA
i calJac3.chr4             I 303 C 0
s otoGar3.GL873742           1700730 956 -   2232465 TATGTAA--TTGATTCTTCAAGTACA--GCAGAAAAAA------TGATGAAAAATAATGCAAGTTCTGAAGACTTTTTTTTTCTACTGGGTTTTTCTGATTGGCCTCATCTGGAAGTAGTTCTCTTTGTGGCGATCTTGATATTCTACTTGATGACGCTGATAGGCAACCTGTTCATCATCATCCTGTCATACGTGGACTCCCATCTCC-ACACTCCCATGTACTTCTTCCTCTCAAACCTCTCTTTTCTGGACCTCTGCTACACCACCAGCTCTATCCCTCAATTGCTGGTCAACCTCTGGGGCCCTGACAAAACCATCTCTTATGCTGGTTGCATGATTCAACTTTACTTTGTCCTTGCTCTGGGAATCACAGAGTGTGTCCTCCTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTATGTAGACCCTTGCATTACACTGCCCTCATGCACCCTCGTGTCTGCCACCTGTTGGCTGTGGCTTCTTGGGTAAGCGGCT--TCACTATTTCAGCACTTCATTCATCCTTTACCTTCTGGGTACCCCTGTGTGGACATCGCCAAGTGGATCACTTCTTCTGTGAAGTTCCTGCACTGCTGCGACTATCGTGTGTTGATACCCGTGCTAATGAGCTGACCCTCATGGTGATGAGCTCCATTTTTGTTCTCATACCTCTCATCCTCATTCTCACTTCTTATGGTGCCATTGCCCGGACTGTACTAAGGATGCCGTCAACCACTGGCCTTCAGAAAGTTTTTGCCACGTGTGGAGCCCATCTTATGGTTGTCTCTCTCTTTTT-CATTCCAGTCATATGCATATATCTCCAGCCACCATCAGGAAAATTTCAAGATCAAGGCAAATTCATTGCTCTCTTTTATACTGTTGTCACGCCTAGTCTCAACCCTCTAATCTACACTCTCCGAAACAAAGATGTAAGAGGGGCAGTGAAGAGACTAATAGGGTGGGA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26137361 965 +  26524999 --TATGA--CTCTTCCTTCAGGTACAGGGGGAAAAAAAGAATGATGAGGGGAAAAAATGCAAG-TCTGAAAGCTACTTCGTTCTACTGGGTTTTTCCAACTGGCCTCATCTGGAAGTAGTTCTCCTTGTGGTTATCTTGATGTTCTACTTGATGACATTGATAGGCTGCCTGTTTATCATTATCTTGTCATCCCTGGATGTCCATCTCCTACACTCCTATGTACTTCTTCCTCGCAAACATCTCTTTTCTGGATCTCTGCTACACCACCATCTTCATCCCTCAGTTGCTGATCAACCTCTGGGGCCCAAAAAAGACCATCTCTTACACTGGTTGCATGATTCAACTTTACTTTGTCTTTGCCCTGGGAACCACAGAGTGCGTCCTCCCAGTGGTGATGTCCTATGACTGTTATGCAGCTGTCTGTAGACCCCTGCATTATGCTGTCCTCATGAACCCTGATTTCTGCCACATATTGGCTGTGGCTTCCTGAGTCAGTTGTTGGTAAACAACTCTGCATTTCATTCTTCCTTTACTTTCTGGGTACCCCTATGTGGACATAACCAAGTAGACCATTTCTTCTGTGAAGTTCCAGCACTGCTGCAATTATCATGTGTTGATACCCATGCAGATGAGCTTACCCTCCTGATCACAAGCTGCATTTTTGTTCTCATACAACTCATCCTCATTCTCAGCTCATATGGTGCCATTGCTCAGGCTGTACTGAGGATGCAGTCAACAACCAGACTTCAGAAGGTCTTTGGAATATGTGAAGCCCATCTTATGGTTGTCTCCCTCTTTTTAAACTCCAGCCATGTGCATATATCTGCAGCCACCATTGGGAGATTCTCAAGATCAAGGCAAGTTCATTGCCCTCGTTTATACTGTTGTCACACCTAGCCTCAACCCTCTCAGCTACACTCTGAGAAACAAATATGTAAGAGGAGCAGTAAGAAGACTAGTGGAGCAGAA
i canFam3.chr35            C 0 I 138
s dasNov3.JH570037            297285 957 -    859332 TATGTGATTTTTTTTCTTCAGTTATC--AGGAA---ATGAGTGATG----GAAAAAATGCAAGTTCTCAAGACTACTTTATCCTGCTGGGTTTTTCTAATTGGCCTCATCTGGAACTGATTCTCTTTGTGGTTATCTTGATGTTCTACTTGACGACACTGACAGGCAACCTATTCATCATCATTCTGTCACACCTGGACACCCATCTCC-ACACTCCCATGTACTTCTTCCTCTCAAACCTCTCTTTTCTGGATCTCTGCTACACCACCAGCTCCATCCCTCAGTTACTGGTCAACCTCTGGGGCCCAGAGAAGACCATCTCTTATGCTGGTTGCATGGTTCAACTCTATTTTGTTCTTGCACTGGGCACCACAGAATGTGTCCTGCTGGTGGTGATGTCCTATGACCCTTATGCGGCTGTTTGCAGACCCCTGCAATACACCGTCCTCATGCACCCTCGTTTCTGTCACCTGTTGGCTGTGGCTTCTTGGGTAAGTGGCT--TTCTTGACTCAGCACTTCATTCCTCTCTTACCTTCTGGGTACCCTTGTGTGGACATCGCCGAGTGGACCACTTCTTCTGTGAAGTTCCAGCACTGCTGCAACTGTCATGTGCTGATACGCATGCTAACAAGGTGACCCTACTGGTCATGAGCTCCTTTTTTGTATTCATACCACTCCTTCTGATTCTCAGTTCCTATGGAGCCATTGCCCAGGTTGTGCTGAAGATGCGGTCCACAGCTGGACTCCAGAAACTCTTTGGGACATGTGGAGCCCATCTTACAGTTGTGGCTCTCTTTTT-CATCCCAGCCATATGCATATATCTCCAGCCACCATCAGAAAATTCTCAAGACCAAGGCAAATTCATTGCCCTTTTTTACACTGTTGTAACACCTAGTCTGAACCCTCTAATCTATACTCTCAGAAATAAAGACATAAGAGGGGCAGTAAAGAGACAAATGGGCTGGGA
i dasNov3.JH570037         C 0 C 0
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=14297.000000
s hg38.chr6_GL000254v2_alt    367605 3 +   4827813 ATG
s panTro5.chr6              29342233 3 + 175400573 ATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29587984 3 + 173848474 ATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5385610 2 +   6154872 AT-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29548458 3 + 172585720 GTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29209572 3 - 170955103 GTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2217413 3 -   2996164 GTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        4875 3 +    766320 GTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28512965 3 -  71996105 GTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2226197 3 +   2316924 GTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2089594 3 -   3067355 GTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171588940 3 - 171630274 GTG
i calJac3.chr4             C 0 I 12
s otoGar3.GL873742           1701686 3 -   2232465 GTG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            298242 3 -    859332 GTG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138326 138 +  26524999 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=507160.000000
s hg38.chr6_GL000254v2_alt    367608 92 +   4827813 GGGGATGTGACAGGGAAATCATGTTGGC---TGTTGTTTTTCCTAGGGTCTTATCCATTTTGAAAGGTTGTTTCCCTGCTTCTTTGTGATTTGTG
s panTro5.chr6              29342236 92 + 175400573 GGGGATGTGACAGGGAAATCATGTTGGC---TGTTGTTTTTCCTAGGGTCTTATCCATCTTGAAAGGTTGTTTCCCTGCTTCTTTGTGATTTGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29587987 92 + 173848474 GGGGATGTGACAGGGAAATCATGTTGGC---TGTTGTTTTTCCTAGGGTCTTATCCATCTTGAAAGGTTGTTTCCCTGCTTCTTTGTGATTTGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5385612 92 +   6154872 GGGGATGTGACAGGGAAATCATGTTGGC---TGTTGTTTTTCCTAGGGTCTTATCCATCTTGAAAGGTGGTTTCCCTGCTTCTTTGTGATTTGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29548461 95 + 172585720 GGGAATATGACAGGGAAATCATGTTGGCTGTTGTTGTTTTTCTTAGGGTCTTGTCCATGTTGAAAGGTGGTTTCCCTGCTTCTTTGTGATTTGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29209575 95 - 170955103 GGGAATATGACAGGGAAATCATGTTGGCTGTTGTTGTTTTTCTTAGGGTCTTGTCCATGTTGAAAGGTGGTTTCCCTGCTTCTTTGTGATTTGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2217416 95 -   2996164 GGGAATATGACAGGGAAATCATGTTGGCTGTTGTTGTTTTTCTTAGGGTCTTGTCCATGTTGAAAAGTGGTTTCCCTGCTTCTTTGTGATTTGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        4878 95 +    766320 GGGGATGTGACAGGGAAATCATGTTGGCTGTTGTTGTTTTTCCTAGGGTCTCATCCATCTTGAAAGATGGTTTCTCTGCTTCTTTGTGATTTATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28512968 95 -  71996105 GGGAATATGACAGGGAAATCATGTTGGCTGTTGTTGTTTTTCTTAGGGTCTTGTCCATTTTGAAAGGTGGTTTCCCTGCTTCTTTGTGATTTGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2226200 95 +   2316924 GGGAATATGACAGGGAAATCATGTTGGCTGTTGTTGTTTTTCTTAGGGTCTTGTCCATGTTGAAAGGTGGTTTCCCTGCTTCTTTGTGATTTGTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2089597 94 -   3067355 GGGAATATGACAGGGAAATCATGTTGGCTGTTGTTGTTTTTC-TAGGATCTCGTCCATCTTGAAAGGTAGTTTCCCTTCTTCTTTGTGATTTGTT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1701689 95 -   2232465 GAAGATGTGACAGAGTAATCAAGTGCCTTGCAAATGTTTTTCAGAGGGTCTTGTCCATATTTGAGGGCAGTTTCCCTGCTTCCTTGTAATTTACA
i otoGar3.GL873742         C 0 I 115
s dasNov3.JH570037            298245 94 -    859332 GGGGTTGTAACAGAGGAATCACTTGTCCTGCAATT-TTGTTCAACTGATCTTGTTCATCTGGGAGGGTGATTTCCCTGCTTCTTTGAGATTTAGT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138326 138 +  26524999 I
e calJac3.chr4             171588943 12 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1033396.000000
s hg38.chr6_GL000254v2_alt    367700 197 +   4827813 TTTCATCTAACAGCTCACAAAACATGGAATAGTTCAGTTCCCCCATTTGTTGCTCTGTTTAATATTTAGTTCTGAAATATTATGTTGAG---ATAAAGGTTTTGATTAGTACCATTTTGTTCTTTTACAATTCTATA-TTTATTTCCATGAAAATTGTGGACTGTGGTTTCAACATAA--------ATAA----------A--TGTGTGTGTGAATAATTA
s panTro5.chr6              29342328 193 + 175400573 TTTCATCTAACAGCTCACAAAACATGGAATAGTTCAGTTCCCCCATTTGTTGCTCTGTTTAATATTTGGTTCTGAAATATTATGTTGAG---ATAAAGGTTTTGATTAGTACCATTTTGGTCTTTTACAATTCTA-----TATTTCCATGAAAATTGTGGACTGTGGTTTCAACATAA--------ATAA----------A--TGTGTGTGTGAATAATTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29588079 197 + 173848474 TTTCATCTAACAGCTCACAAAACATGGAATAGTTCAGTTCCCCCATTTGTTGCTCTGTTTAATATTTGGTTCTGAAATATTATGTTGAG---ATAAAGGTTTTGATTAGTACCATTTTGGTCTTTTACAATTCTATA-TTTATTTCCATGAAAATTGTGGACTGTGGTTTCAACATAA--------ATAA----------A--TGTGTGTGTGAATAATTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5385704 197 +   6154872 TTTCATCTAACAGCTCACAAAACATGGAATAGTTCAGTTCCCCCATTTGTTGCTCTGCTTAATATTTAGTTCTGAAATATTATGTTGAG---ATAAAGGTTTTGATTAGTACCATTTTGGTCTTTTACAATTCTATA-TTTATTTCCATGAAAATTGTGGACTGTGGTTTCAACATAA--------ATAA----------A--TGTGTGTGTGAACAATTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29548556 196 + 172585720 TTTCGTCTAACATTTTACAAAACATGGAATAGTTCAG-TCCCCCATTTGTTGCTCTTTTTAATATTTAGTACTGAAATATTATGTTGAG---ATAAAGTTTTTGATTAGTACCGCTCTGGTCTTTTACAATTCTATA-TTTATTTCCATGAAAATTGTGTACTGTGGTTTCAACATAA--------ATAA----------A--TGTGTGTGTGAATAATTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29209670 196 - 170955103 TTTCGTCTAACAGTTTACAAAACATGGAATAGTTCAG-TCCCCCATTTGTTGCTCTTTTTAATATTTAGTACTGAAATATTATGTTGAG---ATAAAGTTTTTGATTAGTACCGCTCTGGTCTTTTACAATTCTATA-TTTATTTCCATGAAAATTGTGTACTGTGGTTTCAACATAA--------ATAA----------A--TGTGTGTGTGAATAATTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2217511 196 -   2996164 TTTCGTCTAACAGTTTACAAAACATGGAATAGTTCAG-TCCCCCATTTGTTGCTCTTTTTAATATTTAGTACTGAAATATTATGTTGAG---ATAAAGTTTTTGATTAGTACCGCTCTGGTCTTTTACAATTCTATA-TTTATTTCCATGAAAATTGTGTACTGTGGTTTCAACATAA--------ATAA----------A--TGTGTGTGTGAATAATTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        4973 197 +    766320 TTTGTTCTAACAGCTCACAAAACATGGAATAGTTCAG-TCTCACATTTGTTGCTCTTTTTATTATTCAGTTGTGAAATATTATCTTGAG---ATAAAGTTTTTGATTAGTGTCACTTTGGTCTTTTACAATTCTATATTTTATTTCCGTGACAATTGTGGACTGTGGTTTCAACATAA--------ATAA----------A--TGTGTGTGTGAatagttg
i cerAty1.NW_012002711v1   C 0 I 98
s chlSab2.chr17             28513063 196 -  71996105 TTTCATCTAACAGTTCACAAAACATAGAATAGTTCAG-TCTCCCATTTGTTGCTCTTTTTAATATTTATTTCTGAAATACTATGTTGAG---ATAAAGTTTTTGATTAGTACCACTCTGGTCTTTTACAATTCTATA-TTTATTTTCATGAAAATTGTGTACTGTGGTTTCAACATAA--------ATAA----------A--TGTGTATGTGAATAGTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2226295 196 +   2316924 TTTCGTCTAACAGTTTACAAAACATGGAATAGTTCAG-TCCCCCATTTGTTGCTCTTTTTAATATTTAGTTCTGAAATATTATGTTGAG---ATAAAGTTTTTGATTAGTACCACTCTGGTCTTTTACAATTCTATA-TTTATTTCCATGAAAATTGTGTACTGTGATTTCAACATAA--------ATAA----------A--TGTGTGTGTGAATAATTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2089691 198 -   3067355 TTTCGTCTAACAGTTCACAAAACATGGAATAGTTCAG-TCCCCCATTTGTTACTCTTTTTAATATTCAGTTCTGAAATATTATGTTGAG---ATAAAGTTTTTGATTAGTACCACTCTGGTCTTTTATAATTCTATA-TTTATTTCCACGAAAATTGTGTACTGTGGTTTCAACATAA--------ATAA----------ATGTGTGTGTGTGAATAATTA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1701899 211 -   2232465 TTTTACTCTGCAACTTACTTAACATAGAGTAGCTCAG-CCACAAATTTGTTGTTCTTTTTATTGTTTAATTCTGAAATATCTTGAATAGTCAATAAACTTTTTGATTAAAA--AAGTTAGTCCTTAAAAATTCTGTA-TTTTGTT----AGGAATTATGGACTGTGGTTTCAACACAAGTGTGTCTATAAGTATGTGGGCA--TGTGTATGTGAATAATAT
i otoGar3.GL873742         I 115 C 0
s dasNov3.JH570037            298339 195 -    859332 TTTGATCT-ACAACCCTCCTAACCTAGAAGAGTCCAG-ACCCAAATTTGTTGCTCTTTCTTTAGGCTAATTCAGAAATATTTTCCATAA---GCAGCCTTTTTGATTAGTACCACTTTAGTCTTTATAAATTTCATA-TTCATTTCCACAGCTATTAGGAAATGGGGTTTTAACATAA--------TTTA----------A--TGTGTATGTGTGTAATTG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138326 138 +  26524999 I
e calJac3.chr4             171588943  12 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=57961.000000
s hg38.chr6_GL000254v2_alt    367897 14 +   4827813 TGAGGAGATTATTT------------------
s panTro5.chr6              29342521 14 + 175400573 TGAGGAGATTATTT------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29588276 14 + 173848474 TGAGGAGATTATTT------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5385901 14 +   6154872 TGAGGAGATTATTT------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29548752 14 + 172585720 TAAGGAGATTATTT------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29209866 14 - 170955103 TAAGGAGATTATTT------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2217707 14 -   2996164 TAAGGAGATTATTT------------------
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28513259 14 -  71996105 TGAGAAGATTATTT------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2226491 14 +   2316924 TAAGGAGATTATTT------------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2089889 14 -   3067355 TAAGGAGATTATTT------------------
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1702110 11 -   2232465 ---TGAGACTATTT------------------
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            298534 29 -    859332 ---TGAGATTATTTCAAGTATTTGaaatattt
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138326 138 +  26524999 I
e calJac3.chr4             171588943 12 - 171630274 I
e cerAty1.NW_012002711v1        5170 98 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=550447.000000
s hg38.chr6_GL000254v2_alt    367911 108 +   4827813 AAAAAATATTGGCAATATTTCTGACA----ATGTGCTAAATTATGAACTGACCATTGATAT-GTAT-------------AGGAAGAGAAGGGCAATATTGCAAAGATGTAGGCTGAAGAAGTTTTT
s panTro5.chr6              29342535 108 + 175400573 TAAAAATATTGGAAATATTTCTGACA----ATGTGCTAAATTATGAACTGACCATTGATAT-GTAT-------------AGGAAGAGAAGGGCAATATTGCAAAGATGTAGGCTGAAGAAGTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29588290 108 + 173848474 TAAAAATATTGGAAATATTTCTGACA----ATGTGCTAAATTATGAACTGACCATTGATAT-GTAT-------------AGGAAGAGAAGGGCAATATTGCAAAGATGTAGGCTGAAGAAGTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5385915 108 +   6154872 AAAAAATATTGGAAATATTTCTGACA----ATGTGCTAAATTATGAACTGACCATTGATAT-GTAT-------------AGGAAGAGAAGGGCAATATTGCAAAGATGTAGGCTGAAGAAGTTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29548766 108 + 172585720 TAAAAATATTGGAAATATTTCTGACA----ATGTGCTAAATTATGAACTGACCATTGATAT-GTAC-------------AGGAAGAGAAGGGCAGTATTGCAAAGACGTACGCTAAAGAAGTTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29209880 108 - 170955103 TAAAAATATTGGAAATATTTCTGACA----ATGTGCTAAATTATGAACTGACCATTGATAT-GTAC-------------AGGAAGAGAAGGGCAGTATTGCAAAGACGTACGCTAAAGAAGTTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2217721 108 -   2996164 TAAAAATATTGGAAATATTTCTGACA----ATGTGCTAAATTATGAACTGACCATTGATAT-GTAC-------------AGGAAGAGAAGGGCAGTATTGCAAAGACGTACGCTAAAGAAGTTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        5268 108 +    766320 aaaaaatGTTGGAAATATTTCTAACA----GTGTGCTAAATTATGAATTGACTATTGATGT-ATAC-------------AGAAAGAGAAGGGCAATATTGCAAAGACTTAGGCTAAAAAAGTTTTT
i cerAty1.NW_012002711v1   I 98 C 0
s chlSab2.chr17             28513273 108 -  71996105 CAAAAATGTTGGAAATATTTCTAACA----GTGTACTAAATTATGAATTGACTATTGATGT-ATAC-------------AGAAAGAGAAGGGCAATATTGCAAAGACGTACACTAAAGAAGTTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2226505 108 +   2316924 AAAAAATATTGGAAATATTTCTGACA----GTGTGCTAAATTATGAACTGACCATTGATAT-GTAC-------------AGGAAGAGAAGGGCAATATTGCAAAGACGTATGCTAAAGAAGTTTCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2089903 108 -   3067355 AAAAAATATTGGAAATATTTCTGACA----ATGTGCTAAATTATGAACTGACCATTGATAT-GTAC-------------AGGAAGAGAAGGGCAATATTGCAAAGACGTATGCTAAAGAAGTTTTT
i colAng1.NW_012115566v1   C 0 I 50402
s otoGar3.GL873742           1702121 110 -   2232465 TTAAAATATTTGAAATGTTTCTAACAATTGATAAGCTATGTTATGAACTGATTATCAATATAATAT-------------ACATAAAGGGGGGCGATATT--AAAAGCATAGGCTAATGGATTCTT-
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            298563 110 -    859332 aaaaaatatt-ataacatataaaGTA----ATATGCTGATTTGTAAACTGGGCATTACTAC-CTATGAAATGGAAGGGGAGAATAAAGGGAGCATTATAGCAAAAACTTAGGGtat----------
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138326 138 +  26524999 I
e calJac3.chr4             171588943  12 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=689317.000000
s hg38.chr6_GL000254v2_alt    368019 129 +   4827813 GGTTATTAAATAAACCTTAAATGAAGCTAAAAAT--AGTCACAGCA---AA-GAAAAATAGTAAACA-----TAATGAATAACACCATTTATTATATGGTAAAGG-ATATGTCATAATTTTTTGGTTGAAGTTCACTTTTT-
s panTro5.chr6              29342643 129 + 175400573 GGTTATTGAACAAACCTTAAATGAAGCTAAAAAT--AGTCACAGCA---AA-GAAAAATAGTAAACA-----TAATGAATAACACCATTTATTATATGGTAAAGG-ATATGTCATAATTTTTTGGTTGAAATTCACTTTTT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29588398 129 + 173848474 GGTTATTGAACAAACCTTAAATGAAGCTAAAAAT--AGTCACAGCA---AA-GAAAAATAGTAAACA-----TAATGAATAACACCATTTATTATATGGTAAAGG-ATATGTCATAATTTTTTGGTTGAAATTCACTTTTT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5386023 129 +   6154872 GGTTATTGAATAAACCTTAAATGAAGCTAAAAAT--AGTCACAGCA---AA-GAAAAATAGTAAACA-----TAATGAATAACACCATTTATTATATGGTAAAGG-ATATGTCATAATTTTTTGGTTGAAGTTCACTTTTT-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29548874 129 + 172585720 GGTTATTGAATAAACCTTAAATGAAGCTAAAAAT--AGTCACAGGA---AA-GAAAAATGGTAAACA-----TAAAGAATAACACTGTTTATTATATGGTAAAGG-ACGTATCATAATTTTTTGGTTGAAGTTCACTTTTT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29209988 129 - 170955103 GGTTATTGAATAAACCTTAAATGAAGCTAAAAAT--AGTCACAGAA---AA-GAAAAATGGTAAACA-----TAAAGAATAACACTGTTTATTATATGGTAAAGG-ACGTATCATAATTTTTTGGTTGAAGTTCACTTTTT-
i macFas5.chr4             C 0 I 1151
s macNem1.NW_012011356v1     2217829 132 -   2996164 GGTTATTGAATAAACCTTAAATGAAGCTAAAAAT--AGTCACAGAAAAGAA-GAAAAATGGTAAACA-----TAAAGAATAACACTGTTTATTATATGGTAAAGG-ACGTATCATAATTTTTTGGTTGAAGTTCACTTTTT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        5376 129 +    766320 GGTTATTGAATAAACCTTAAATGAAGCTAAAAAT--AGTCACAGCA---AA-GAAAAATGGTAACCA-----TAATGAATAATATTGTTTATTTTATGGTAAAGT-ATATATCATAAGTTTTTGGCTGAAAGACACTTTTT-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28513381 129 -  71996105 GGTTATTGAATAAACCTTAAATGAAGCTAAAAAT--AGTCACAGCA---AA-GAAAAATGGTAAACG-----TAAAGAATAACACTGTTTATTATATGGTAAAGG-ACGTATCATAATTTTTTGGTTCAAGTTCACTTTTT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2226613 129 +   2316924 GGTTATTGAATAAACCTTAAATGAAGCTAAAAAT--AGTTACAGCA---AA-GAAAAATGGTAAACA-----TAAAGAATAACACTGTTTATTATATGGTAAAGG-ACGTATCATAATTTTTTGGTTGAAGTTCACTTTTT-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2140413 129 -   3067355 GGTTATTGAATAAACCTTAAATGAAGCTGAAAAT--AGTCACAGCA---AA-GAAAAATGGTAACCA-----TAATGAATAATATTGTTTATTATATGGTAAAGG-ATGTATCATAAGTTTTTGGCTGAAAGACACTTTTT-
i colAng1.NW_012115566v1   I 50402 C 0
s otoGar3.GL873742           1702231 134 -   2232465 TTTTATTGAACAGGCCTTAAATCAAGCTAAAAGT---GTCACAGCA---AA-GGCAAATGGTAAATATGATGTGATGAATAGCATTATTTATTACATAGTAAAAATGCATAGTACTATTAATTGGCTGAAGCACATTTTTT-
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            298673 131 -    859332 tatagttgaacaggccctaaatttagctaaagactctctcacagca---aatgcaaaatggcaaaca-----tgatgagaagcatcacttattatgtgttaaaat--catatgacaa-tctttgtctgaaacacactttttt
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138326 138 +  26524999 I
e calJac3.chr4             171588943  12 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=77066.000000
s hg38.chr6_GL000254v2_alt    368148 14 +   4827813 AAAGACACTAAATT
s panTro5.chr6              29342772 14 + 175400573 AAAGACACTAAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29588527 14 + 173848474 AAAGACACTAAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5386152 14 +   6154872 AAAGACACTAAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29549003 14 + 172585720 AAAGACACTAAGTT
i rheMac8.chr4             C 0 I 1151
s macFas5.chr4              29211268 14 - 170955103 aaaGACACTAAGTT
i macFas5.chr4             I 1151 C 0
s macNem1.NW_012011356v1     2217961 14 -   2996164 AAAGACACTAAGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        5505 14 +    766320 AAAGACTCTAAATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28513510 14 -  71996105 AAAGACACTAAGTT
i chlSab2.chr17            C 0 I 1151
s manLeu1.NW_012104165v1     2226742 14 +   2316924 AAAGACACTAAGTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2140542 14 -   3067355 AAAGACACTAAATC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1702365 13 -   2232465 AAAAACACTATGT-
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            298804 14 -    859332 caagatactaaatt
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138326 138 +  26524999 I
e calJac3.chr4             171588943 12 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=-856.000000
s hg38.chr6_GL000254v2_alt    368162 1 +   4827813 -A
s panTro5.chr6              29342786 1 + 175400573 -A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29588541 1 + 173848474 -A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5386166 1 +   6154872 -A
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29550168 1 + 172585720 -A
i rheMac8.chr4             I 1151 C 0
s macFas5.chr4              29211282 1 - 170955103 -A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2217975 1 -   2996164 -a
i macNem1.NW_012011356v1   C 0 I 63457
s cerAty1.NW_012002711v1        5519 1 +    766320 -A
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28514675 1 -  71996105 -A
i chlSab2.chr17            I 1151 C 0
s manLeu1.NW_012104165v1     2226756 1 +   2316924 -a
i manLeu1.NW_012104165v1   C 0 I 72086
s colAng1.NW_012115566v1     2140556 1 -   3067355 -A
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1702378 1 -   2232465 -G
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            298818 1 -    859332 c-
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138326 138 +  26524999 I
e calJac3.chr4             171588943 12 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=145925.000000
s hg38.chr6_GL000254v2_alt    368163 28 +   4827813 TATAATTTATCCTGTAGGTCTGCATTCT
s panTro5.chr6              29342787 28 + 175400573 TATAATTTATCCTGTAGGCCTGCATTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29588542 28 + 173848474 TATAATTTATCCTGTAGGCCTGCATTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5386167 28 +   6154872 TATAATTTATCCTGTAGGTCTGCATTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29550169 28 + 172585720 TATAATTTACCCTGTAGGTCTACATACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29211283 28 - 170955103 TATAATTTACCCTGTAGGTCTACATACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2281433 28 -   2996164 TCTAATTTATCCTGTAGGTCTACATACT
i macNem1.NW_012011356v1   I 63457 C 0
s cerAty1.NW_012002711v1        5520 28 +    766320 TCTAATTTATCCTGTAGGTCTACATACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28514676 28 -  71996105 TATAATTTACCCTGTAGGTCTACATACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2298843 28 +   2316924 TCTAATTTATCCTGTAGGTCTACATACT
i manLeu1.NW_012104165v1   I 72086 C 0
s colAng1.NW_012115566v1     2140557 28 -   3067355 TCTAATTTATCCTGTAGGTCTACATACT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1702379 28 -   2232465 TGTAACTTATCCTATAGATTTATATACT
i otoGar3.GL873742         C 0 I 1
s dasNov3.JH570037            298819 24 -    859332 catgagtaat----tggctctatatact
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138326 138 +  26524999 I
e calJac3.chr4             171588943 12 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=213899.000000
s hg38.chr6_GL000254v2_alt    368191 35 +   4827813 TGTCACATTGAACAGTA--AACT--AATATCTCTTTAAA
s panTro5.chr6              29342815 35 + 175400573 TGTCACATTGAACAGTA--AACT--AATATCTCTTTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29588570 35 + 173848474 TGTCACATTGAACAGTA--AACT--AATATCTCTTTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5386195 35 +   6154872 TGTCACATTGAACAGTA--AACT--AATATCTCTTTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29550197 35 + 172585720 TGTCACAGTGAACAGTA--AACT--AATATCTTTTTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29211311 35 - 170955103 TGTCACAGTGAACAGTA--AACT--AATATCTTTTTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2281461 35 -   2996164 TGTCACACTGAACGGTA--AACT--AATATCTCTTTAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        5548 35 +    766320 TGTCACACTGAACAGTA--AACT--AATGTCTCTTTAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28514704 35 -  71996105 TGTCACAGTGAACAGTA--AACT--AATATCTCTTTAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2298871 35 +   2316924 TGTCACACTGAACAGTA--AACT--AATGTCTCTTTAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2140585 35 -   3067355 TGTCACACTGAACGGTA--AACT--AATATCTCTTTAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171588955 36 - 171630274 TGTGATATT-AACAGTA--TAATGGAATATCTCCTCACA
i calJac3.chr4             I 12 C 0
s otoGar3.GL873742           1702408 37 -   2232465 GGTTACATTGAATAGTAGGAACA--AATATCTGTTTAAA
i otoGar3.GL873742         I 1 I 109
s dasNov3.JH570037            298843 36 -    859332 tgtcacattgaacagca-taaAA--AATATATGTTCAAA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138326 138 +  26524999 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=39883.000000
s hg38.chr6_GL000254v2_alt    368226 7 +   4827813 ATGGCTG
s panTro5.chr6              29342850 7 + 175400573 ATGGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29588605 7 + 173848474 ATGGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5386230 7 +   6154872 ATGGCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29550232 7 + 172585720 ATGGCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29211346 7 - 170955103 ATGGCtc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2281496 7 -   2996164 ATGGCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        5583 7 +    766320 ATGGCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28514739 7 -  71996105 ATGGCtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2298906 7 +   2316924 ATGGCtc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2140620 7 -   3067355 ATGGCTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171588991 7 - 171630274 ATGATTC
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1702554 7 -   2232465 atggctg
i otoGar3.GL873742         I 109 I 175
s dasNov3.JH570037            298879 7 -    859332 CTAGTCA
i dasNov3.JH570037         C 0 I 46
e canFam3.chr35             26138326 138 +  26524999 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=243316.000000
s hg38.chr6_GL000254v2_alt    368233 39 +   4827813 ATTCGTTCATCTGTCCAT---TTATTCATTAACTTATTCTTC
s panTro5.chr6              29342857 39 + 175400573 ATTCGTTCATCTGTCCAT---TTATTCATTAACTTATTCTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29588612 39 + 173848474 ATTCGTTCATCTGTCCAT---TTATTCATTAACTTATTCTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5386237 39 +   6154872 ATTCGTTCATCTGTCCAT---TTATTCATTAACTTATTCTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29550239 39 + 172585720 ATTCATTCTTCTGTCCAT---TTATTCATTAACTTATTCTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29211353 39 - 170955103 attcattcttctgtccat---ttattcattaacttattcttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2281503 39 -   2996164 ATTCGTTCCTCTGTCCAT---TTATTCATTAACTTATTCTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        5590 39 +    766320 ATTCATTCTTCTGTCCAT---TTATTCATTAACTTATTCTTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28514746 39 -  71996105 attcattcttctgtccat---ttattcattaatttattcttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2298913 39 +   2316924 attcattcttctgtccat---ttattcattaactcattcttc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2140627 39 -   3067355 ATTCGTTCATCTGTCCAT---TTATTCATTAACTTATTCTTT
i colAng1.NW_012115566v1   C 0 T 46929
s calJac3.chr4             171588998 42 - 171630274 ATCCATCTCTTTATTTATCAACCATTCTTTTATTTATTCACT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1702736 39 -   2232465 attcgtttacctgtccat---ttattcatcaacttactCTTC
i otoGar3.GL873742         I 175 I 9
s dasNov3.JH570037            298932 38 -    859332 atccatccatccatccat---ccatccattcattcaCTCTC-
i dasNov3.JH570037         I 46 C 0
e canFam3.chr35             26138326 138 +  26524999 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=246554.000000
s hg38.chr6_GL000254v2_alt    368272 44 +   4827813 ATTAGCTAAATCTTACTGGACATGTACTCTCTCCCAGTTTGTGA
s panTro5.chr6              29342896 44 + 175400573 ATTAGCTAAATCTTATTGGACGTGTACTCTCTCCCAGTTTGTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29588651 44 + 173848474 ATTAGCTAAATCTTATTGGACATGTACTCTCTCCCAGTTTGTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5386276 44 +   6154872 ATTAGCTAAATCTTATTGGACGTGTACTCTCTCCCAGTTTGTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29550278 44 + 172585720 ATTAGCTAAATCTGTTTGAATGTGTACTCTCTCCCAGTTTGTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29211392 44 - 170955103 attAGCTAAATCTGTTTGAATGTGTACTCTCTCCCAGTTTGTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2281542 44 -   2996164 ATTAGCTAAATCTTATTGAATGTGTACTGTCTCCCAGTTTGTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        5629 44 +    766320 ATTAGCTGAATCTTATTGAATGTGTACTCTCTCCCAGTTTGTGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28514785 44 -  71996105 attAGCTAAATCTTATTGAATGTGTAGTCTCTCCCAGTTTGTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2298952 44 +   2316924 attAGCTAAATCTGTTTGAATGTGTACTCTCTCCCAGTTTGTGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2093737 44 -   3067355 ATTAGCTAAATCTTTTTGAATGTGTACTCTCTCCCAGTTTGTGA
i colAng1.NW_012115566v1   T 46929 C 0
s calJac3.chr4             171589040 39 - 171630274 ----GTGAGCACTTGCTGAGCATGTACTTTA-ACAAGGTCATGG
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1702784 40 -   2232465 ACTAGCTAAATCTTATTG----TCTACTCTGTCCCTGATTGTGG
i otoGar3.GL873742         I 9 C 0
s dasNov3.JH570037            298970 39 -    859332 -TTAGCTAAATCTTATTG----TCTACTCTTCCCCAGATTCTGG
i dasNov3.JH570037         C 0 I 5
e canFam3.chr35             26138326 138 +  26524999 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=431711.000000
s hg38.chr6_GL000254v2_alt    368316 88 +   4827813 AATTCTTGGTAACATGTATAAATATAACATA--CTTTGTCTGAACAGAATGCACTCTCT--------ATCGGGAAAAATGGTAAC-----ATAAGATA-----AAAGA
s panTro5.chr6              29342940 88 + 175400573 AATTCTTGGTAACATGTATAAATATAACATA--CTTTGTCTGGACAGAACTCACTCTCT--------GTCGGGAAAAATGGCAAC-----ATAAGATA-----AAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29588695 88 + 173848474 AATTCTTGGTAACATGTATAAATATAACATA--CTTTGTCTGGACAGAACGCACTCTCT--------GTCGGGAAAAATGGCAAC-----ATAAGATA-----AAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5386320 88 +   6154872 AATTCTTGGTAACATGTATAAATATAACATA--GTTTGTCTGAACAGAACGCACTCTCT--------GTCGGGAAAAATGGCAAC-----ATAAGATA-----AAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29550322 83 + 172585720 AATTCTTGGTAACATGTATAAATATAACATT--CTTTGTCTGAACAAAATGCACTTTCT--------GCTGGGAAAAATGGCAAC-----TTAAGATA----------
i rheMac8.chr4             C 0 I 5
s macFas5.chr4              29211436 83 - 170955103 AATTCTTGGTAACATGTATAAATATAACATT--CTTTGTCTGAACAAAATGCACTTTCT--------GCCGGGAAAAATGGCAAC-----TTAAGATA----------
i macFas5.chr4             C 0 I 5
s macNem1.NW_012011356v1     2281586 91 -   2996164 AATTCTTGGTAACATGTATAAATATAACATA--CTCTGTCTGAACAGAACACACTCTCTGTCCCTCCGTCCAGAAAAATGGCAAC-----GTAAAAGA----------
i macNem1.NW_012011356v1   C 0 T 62144
s cerAty1.NW_012002711v1        5673 91 +    766320 AATTCTTGGTAACATGTATAAATATAACATA--CTCTGTCTGAACAGAACGCACTCTCTGTCCCTCCATCTGGAAAAATGGCAAT-----GTAAAAGA----------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28514829 88 -  71996105 AATTCTTGGTAACATGTATAAATATAACGTA--TTTTGTCTGAACAGAATGCACTTTCTG--------TTGGGAAAAATGGCAACTTAAGATAAAAGA----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2298996 91 +   2316924 AATTCTTGGTAACATGTATAAATATAACATA--CTCTGTCTGAACAGAACGCACTCTCTGTCCCTCCATCTGGAAAAATGGCAAT-----GTAAAAGA----------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2093781 88 -   3067355 AATTCTTGGTAACATGTATAAATATAACATA--CTTTGTCTGAACAGAACGCACTTTCT--------GTCGGGAAAAATGGCAAC-----TTAAGATAAAAGA-----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171589079 84 - 171630274 AGTGCCTGGTAACAGGTATAAATAAAACACA--GTAAGCATAAATACCATTCACT------------TGTGGAGAAAACAGCTAT-----GTAAAATC-----GAAGG
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1702824 89 -   2232465 GATTCTTGGTAACATACATGAGTATCACACATTTTTTGTCTG-ACAGAACTCACCCTCT--------TGTGGGAAAAATGGGAAC-----GTAAGATA-----AAAGA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26138464 86 +  26524999 AGCTCTCGCTCATAGATATAAATTAAGCA----GTTTGTCTAAATATCAATTACTCTCC--------AATGAAGAAAACAGCCAT-----GTAAAATC-----AAAAT
i canFam3.chr35            I 138 C 0
s dasNov3.JH570037            299014 89 -    859332 TTTTTTTGGTAACATACATGAATAGAACACATTCTTTGTCTGAGTGGAATTCATTCTCT--------AGTGGG-AACATGGTAAT-----GTAATAGC-----AAAGG
i dasNov3.JH570037         I 5 C 0
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=301445.000000
s hg38.chr6_GL000254v2_alt    368404 51 +   4827813 TGAAGTATCTGTACATGGCTTAATTTGTCACTGGGGTTAATGCTAATAAAT
s panTro5.chr6              29343028 51 + 175400573 TGAAGTATCTGTACATGGCTTAATTTGTCACTGGGGTTAATGCTAATAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29588783 51 + 173848474 TGAAGTATCTGTACAGGGCTTAATTTGTCACTGGGGTTAATGCTAATAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5386408 51 +   6154872 TGAAGTATATGTACATGGCTTAATTTGTCTCTGGGGTTAATGCTAATAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29550410 51 + 172585720 TGAAGTGTCTGTACCTGGCTTAATTTGTCACTGGGGTTAATGCTAATATAT
i rheMac8.chr4             I 5 C 0
s macFas5.chr4              29211524 51 - 170955103 TGAAGTGTCTGTACATGGCTTAATTTGTCACTGGGGTTAATGCTAATAAAT
i macFas5.chr4             I 5 C 0
s macNem1.NW_012011356v1     2219533 51 -   2996164 TGAAGTGTCTGTACATGGCTTAATTTGTCACTGGGGTTAATGCTAATAAAT
i macNem1.NW_012011356v1   T 62144 C 0
s cerAty1.NW_012002711v1        5764 51 +    766320 TGAAGTATCCGTTCATGGCTTAATTTGTCACTGGGGGTAATGCTAATAAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28514917 51 -  71996105 TGAAGTATCTGTACATGGCTTAATTTGTGAATGGGGTTAATGCTAATAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2299087 51 +   2316924 TGAAGTATCCGTTCATGGCTTAATTTGTCACTGGGGGTAATGCTAATAAAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2093869 51 -   3067355 TGAAGTATCTGTACATGGCTTAATTTGTGACTGGGATTAATGCTAATAAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171589163 45 - 171630274 -AAAACATCT----ATAGCAATGTTTTTCCATGGCACAAAC-CTAATGAAT
i calJac3.chr4             C 0 I 1
s otoGar3.GL873742           1702913 51 -   2232465 TGAAGTAGTTGTACATGACTTAATTTGTCACTGGGCATAAGGCCAATAAAT
i otoGar3.GL873742         C 0 I 272
s canFam3.chr35             26138550 38 +  26524999 TGAA-CATCAATA------TTAAATTTTTTCAGAGC------ATAATAAAT
i canFam3.chr35            C 0 C 0
s dasNov3.JH570037            299103 51 -    859332 TGAAGTATTTATACATGATTCAATTCGTTGTTGAGCTCAACGCTAATAAAT
i dasNov3.JH570037         C 0 C 0
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=64248.000000
s hg38.chr6_GL000254v2_alt    368455 10 +   4827813 TAAGATAGCT
s panTro5.chr6              29343079 10 + 175400573 TAAGATAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29588834 10 + 173848474 TAAGATAGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5386459 10 +   6154872 TAAGATAGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29550461 10 + 172585720 TAAGATAGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29211575 10 - 170955103 TAAGATAGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2219584 10 -   2996164 TAAGATAGCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        5815 10 +    766320 TAAGATAGCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28514968 10 -  71996105 TAACATAGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2299138 10 +   2316924 TAAGATAGCT
i manLeu1.NW_012104165v1   C 0 T 71007
s colAng1.NW_012115566v1     2093920 10 -   3067355 TAACATAGCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171589209  8 - 171630274 CAAGACAG--
i calJac3.chr4             I 1 C 0
s otoGar3.GL873742           1703236 10 -   2232465 CAAGGTAGCT
i otoGar3.GL873742         I 272 C 0
s canFam3.chr35             26138588 10 +  26524999 AAAAGTATCC
i canFam3.chr35            C 0 I 6
s dasNov3.JH570037            299154 10 -    859332 CAAGGTAGCt
i dasNov3.JH570037         C 0 C 0
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=363415.000000
s hg38.chr6_GL000254v2_alt    368465 77 +   4827813 TTTAAAAATCAGAAACAATatactctgattactcttcagattgtatacatctttcactttttaAAAATCGAAAGCAA
s panTro5.chr6              29343089 77 + 175400573 TTTAAAAATCAGAAACAATatactctgattactcttcagattgtatacatctttcactttttaAAAATCGAAAACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29588844 77 + 173848474 TTTAAAAATCAGAAACAATatactctgattattcttcagattgtatacatctttcactttttaAAAATCGAAAACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5386469 77 +   6154872 TTTAAAAATCAGAAACAATatactctgattactcttcagattgtatacatctttcactttttaAAAATTGAAAACAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29550471 77 + 172585720 TTTAAAAATCAGAAACAATatactctgattactctttagattgtatacatctttcactttttaAAAATCAAAAACAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29211585 77 - 170955103 TTTAAAAATCAGAAACAATatactctgattactctttagattgtatacatctttcactttttaAAAATCAAAAACAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2219594 77 -   2996164 TTTAAAAATCAGAAACAATatactctgattactctttagattgtatacatctttcactttttaAAAATCAAAAACAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        5825 77 +    766320 TTTAAGAGTCAGAAACAATAAactctgattactcttcagatcgtgtaaatctttcactttttaAAAATCAAAAACAA
i cerAty1.NW_012002711v1   C 0 I 353
s chlSab2.chr17             28514978 77 -  71996105 TTTAAAAATCAGAAACAATATGCTCTGATTACTCTTTAAATTGTATACATCTTTCGCTTTTTAAAAATCAAAAACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2228141 77 +   2316924 TTTAAAAATCAGAAACAATatactctgattactctttagattgtatacatctttcactttttaAAAATCAAAAACAA
i manLeu1.NW_012104165v1   T 71007 C 0
s colAng1.NW_012115566v1     2093930 77 -   3067355 TTTAAAAATCAGAAACAATatactctgattactctttagattgtatacatctttcaccttttaAAAATCAAAAACAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171589217 19 - 171630274 -------------------------------------------------ACTTTTCCTGATTGAAAAT---------
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1703246 73 -   2232465 TTTAAATAGCAAAACCAATATATTCTGATT-TTTTTCAGATCAAATCAATCTTTCACCTTCTAAAAATAAAAAA---
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26138604 58 +  26524999 TTGAAAATTAAGAAATGAAATTC------CAATAGAAAGATGATGTAC-----TTAGTTTTTAAAAAGC--------
i canFam3.chr35            I 6 C 0
s dasNov3.JH570037            299164 18 -    859332 -----------------------------------------------------------ttttaaaatataaaatat
i dasNov3.JH570037         C 0 C 0
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=161971.000000
s hg38.chr6_GL000254v2_alt    368542 40 +   4827813 AACAATAAGTTTGATAATAAACTCTGATAATA-------AATTCATA
s panTro5.chr6              29343166 40 + 175400573 AACAATAAGTTTGATAATAAACTCTGATAATA-------AATTCATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29588921 40 + 173848474 AACAATAAGTTTGATAATAAACTCTGATAATA-------AATTCATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5386546 38 +   6154872 AACAAT--GTTTGATAATAAACTCTGATAATA-------AATTCATA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29550548 46 + 172585720 AACAAGAAGTTTGGCAATAAACTCTGAAAATA-AATACCAATCCATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29211662 46 - 170955103 AACAAGAAGTTTGGCAATAAACTCTGAAAATA-AATACCAATCCATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2219671 46 -   2996164 AACAAGAAGTTTGGCAATAAACTCTGAAAATA-AATACCAATCCATA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28515055 46 -  71996105 AACAAGAAGTTTGGCAATAAACTCTGAAAATA-AATACCAATTCATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2228218 46 +   2316924 AACAAGAAGTTTGGCAATAAACTCTGAAAATA-AATACCAATTCATA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2094007 46 -   3067355 AACAAGAAGTTTGGCAATAAACTCTGAAAATA-AATACCAATTCATA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171589236 42 - 171630274 AGCATGAAATTTGTT-GTAAATCTTGATAAAA----GCAGAGTTATA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1703319 46 -   2232465 AGCAAGGAAATTGGCCATCAACCCTGAAAATA-AATTTCATTTGATA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26138662 24 +  26524999 -----------------TAGACTGTGAT------CTTCTAATTTCTC
i canFam3.chr35            C 0 C 0
s dasNov3.JH570037            299182 47 -    859332 aaCAAGAAGTTTGGTCATAAATCTTGGAAAAAAAAGACTGGTTGGTA
i dasNov3.JH570037         C 0 C 0
e cerAty1.NW_012002711v1        5902 353 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=193130.000000
s hg38.chr6_GL000254v2_alt    368582 29 +   4827813 GCTCCTGTAGGAAGACAGTGCTATTAAAT
s panTro5.chr6              29343206 29 + 175400573 GCTCCTGTAGGAAGACAATGCTATTAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29588961 29 + 173848474 GCTCCTGTAGGAAGACAATGCTATTAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5386584 29 +   6154872 GCTCCTGTAGGAAGACAATGCTATTAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29550594 29 + 172585720 GCTCCTGGAGGAAGACAATGCTATTAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29211708 29 - 170955103 GCTCCTGGAGGAAGACAATGCTATTAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2219717 29 -   2996164 GCTCCTGGAGGAAGACAATGCTATTAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        6255 29 +    766320 GCTCCTGTAGGAAGACAATGCTAGTAAAT
i cerAty1.NW_012002711v1   I 353 C 0
s chlSab2.chr17             28515101 29 -  71996105 GCTCCTGTAGGAAGACAATGCTATTAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2228264 29 +   2316924 GCTCCTGGAGGAAGAGAATGCTATTAAAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2094053 29 -   3067355 GCTCCTGTAGGAAGACAATGCTATTAAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171589278 29 - 171630274 ATTCCTAGGAAAAGATAATACTTTTATTT
i calJac3.chr4             C 0 I 12
s otoGar3.GL873742           1703365 29 -   2232465 ACTTCTGTAGGAAGATGATGCCATGAAGA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26138686 27 +  26524999 ACTTTTATGGGAGAAT-TTGCCATAAAA-
i canFam3.chr35            C 0 C 0
s dasNov3.JH570037            299229 29 -    859332 ATTCCTGTAGGAAGATAATGCTATTAAAT
i dasNov3.JH570037         C 0 C 0
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=66885.000000
s hg38.chr6_GL000254v2_alt    368611 10 +   4827813 GAAACAAAGC
s panTro5.chr6              29343235 10 + 175400573 GAAACAAAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29588990 10 + 173848474 GAAACAAAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5386613 10 +   6154872 GAAACAAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29550623 10 + 172585720 GAAACAAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29211737 10 - 170955103 GAAACAAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2219746 10 -   2996164 GAAACAAAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        6284 10 +    766320 GAAACAAAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28515130 10 -  71996105 GAAACAAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2228293 10 +   2316924 GAAACAAAAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2094082 10 -   3067355 GAAACAAAAC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1703394 10 -   2232465 TAAACAAAAC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            299258 10 -    859332 GAAACAAAAC
i dasNov3.JH570037         C 0 I 11
e canFam3.chr35             26138713  0 +  26524999 C
e calJac3.chr4             171589307 12 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=658624.000000
s hg38.chr6_GL000254v2_alt    368621 105 +   4827813 AGAATATGTGCTTAATTT-----GCTTTAG-----------TTGGC--------CTAGTTAATGACATATTAAAGATAGCTTAAAACTC----TT-----AACATC-CTTGTTCTTTGCTGAATAGC--ATTATTAA-----AAAA
s panTro5.chr6              29343245 105 + 175400573 AGAATATGTGCTTAATTT-----GCTTTAG-----------TTGGC--------CTAGTTAATGACATATTGAAGATAGCTTAAAACTC----TT-----AACATC-CTTGTTCTTTGCTGAATAGC--ATTATTAA-----AAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29589000 105 + 173848474 AGAATATGTGCTTAATTT-----GCTTTAG-----------TTGGC--------CTAGTTAATGACATATTGAAGATAGCTTAAAACTC----TT-----AACATC-CTTGTTCTTTGCTGAATAGC--ATTATTAA-----AAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5386623 105 +   6154872 AGAATATGTGCTTAATTT-----GCTTTAG-----------TTGGC--------CTAGTTAATGACATATTGAAGATAGCTTAAAACTC----TT-----AACATC-CTTGTTCTTTGCTGAATAGC--ATTATTAA-----AAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29550633 105 + 172585720 AGAATATGTGCTTAATTT-----GCTTTAG-----------TTGGC--------TTAGTCAATGACATATTGAAGACAGCTTAAAACTC----TT-----AACATC-CTTGTTCTTTGCTGAATAGC--ATTATTTA-----AAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29211747 105 - 170955103 AGAATATGTGCTTAATTT-----GCTTTAG-----------TTGGC--------TTAGTCAATGACATATTGAAGACAGCTTAAAACTC----TT-----AACATC-CTTGTTCTTTGCTGAATAGC--ATTATTTA-----AAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2219756 105 -   2996164 AGAATATGTGCTTAATTT-----GCTTTAG-----------TTGGC--------TTAGTCAATGACATATTGAAGACAGCTTAAAACTC----TT-----AACATT-CTTGTTCTTTGCTGAATAGC--ATTATTAA-----AAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        6294 105 +    766320 AGAATATGTGCTTAATTT-----GCTTTAG-----------TTGGT--------GTAGTTAATGACATGTTGAAGATAGCTTAAAACTC----TT-----AACATT-ATTGTCCTTTGCTGAATAGC--ATTATTTT-----AAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28515140 105 -  71996105 AGAATATGTGCTTAATTT-----GCTTTAG-----------TTGGC--------TTAGTCAATGACATATTGAAGACAGCTTAAAACTC----TT-----AACATC-CTTGTTCTTTGCTGAATAGC--ATTATTAA-----AAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2228303 105 +   2316924 AGAATATGTGCTTAATTT-----GCTTTAG-----------TTGGC--------TTAGTCAATGACGTATTGAAGACAGCTTAAAACTC----TT-----AACATC-CTTGTTCTTTGCTGAATAGC--ATTATTAA-----AAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2094092 105 -   3067355 AGAATATGTGCTTTATTT-----GCTTTAG-----------TTGGC--------TTAGTCAATGACATATTGAAAACAGCTTAAAACTC----TT-----AACATC-CTTGTTCTTTGTTGAATAGC--ATTATTAA-----AAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171589319 136 - 171630274 AGAACATGTCTTTAATTTCTTGCCTTTTAGGCAGAATGCTTTTGACTTCTATCTTTAGTTAAATACACAGC-AAAATACTTTAAATCTT----TTTCTCCAACACCGCTTGTTCTTTGTTGGATAGTAAATTTTGAG-----AGGA
i calJac3.chr4             I 12 C 0
s otoGar3.GL873742           1703404 107 -   2232465 AGAATACGT--TTAACTT-----ACTTTAG-----------TTGGC--------TTAGTTAGTGACATATTGAAGATACATTAGAACTCCTCTTT-----TACATC-ATTTCTTTTGGCTGAATAGC--ATTAGTTT-----TAAA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26138713 102 +  26524999 -----------TTAGTTT-----TCTATTT-----------TTGGT--------TTAGCTAAAGACATGTTGAA-ATCCCTTGAATCTT----TT-CTGCATCACT-GTTAGTCTTTATTGAGTAGT--GGTTTTGATAGAGAGGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH570037            299279 108 -    859332 AGAGTATGTGTTTTAATT-----GCTTTAG-----------TTGGT--------TTAGCTAATTACATGTGGAAGATATCTTAAACTTG----TT--TTAATCATT-ATTGTTCTTCACTGGGCAGT--AATTTTTA-----AAAA
i dasNov3.JH570037         I 11 I 1972
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=-2133.000000
s hg38.chr6_GL000254v2_alt    368726 4 +   4827813 ATTT-----
s panTro5.chr6              29343350 4 + 175400573 ATTT-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29589105 4 + 173848474 ATTT-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5386728 4 +   6154872 ATTT-----
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29550738 3 + 172585720 A-TT-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29211852 3 - 170955103 A-TT-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2219861 3 -   2996164 A-TT-----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        6399 3 +    766320 A-TC-----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28515245 3 -  71996105 A-TT-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2228408 3 +   2316924 A-TT-----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2094197 3 -   3067355 A-TT-----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171589455 3 - 171630274 A-TT-----
i calJac3.chr4             C 0 T 4909
s otoGar3.GL873742           1703511 3 -   2232465 A-CT-----
i otoGar3.GL873742         C 0 I 2
s canFam3.chr35             26138815 8 +  26524999 A-TTTTGTT
i canFam3.chr35            C 0 C 0
e dasNov3.JH570037            299387 1972 -    859332 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=61580.000000
s hg38.chr6_GL000254v2_alt    368730 13 +   4827813 CTTTATTTTGATT
s panTro5.chr6              29343354 13 + 175400573 CTTTATTTTGATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29589109 13 + 173848474 CTTTATTTTGATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5386732 13 +   6154872 CTTTATTTTGATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29550741 13 + 172585720 ATTTACTTTGATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29211855 13 - 170955103 ATTTACTTTGATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2219864 13 -   2996164 ATTTACTTTGATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        6402 10 +    766320 CTTCATTTTG---
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28515248 13 -  71996105 ATTTACTTTGATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2228411 13 +   2316924 ATTTACTTTGATT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2094200 13 -   3067355 ATTTACTTTGATT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1703516 13 -   2232465 CTTTACTTTTATT
i otoGar3.GL873742         I 2 C 0
s canFam3.chr35             26138823 13 +  26524999 CTGTATTTTCATT
i canFam3.chr35            C 0 T 1270
e dasNov3.JH570037            299387 1972 -    859332 I
e calJac3.chr4             171589458 4909 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1948940.000000
s hg38.chr6_GL000254v2_alt    368743 369 +   4827813 TTATtttttccagctttactgaggcaca------aataaaataacatatatttaatgtgcacaatgtgat----------tatatataaatcaaaccaaattgtg-aaattattaccacagtcaaattaacacatccatcatctcacatcgttac--------tgtgtgtagggggagcggggagggtcaggacacttaagatctaatctctaagcaaatttcaagtatacagtacagtattattaactatagtcaccataatctacattagatctccagaatgtattcatcttatgacagaaagtttgtaccatttggctgtctctccacttcccaccctc----cagcccatggcaaccaccattctattctctgcttctatgggttcagtttttt
s panTro5.chr6              29343367 369 + 175400573 TTATtttttccagctttactgaggcaca------aataaaataacatatatttaatgtgcacaatgtgat----------tatatataaatcaaaccaaattgtg-aaattattaccacaatcaaattaacacatccatcatctcacatcgttac--------tgtgtgtagggggagcggggagggtcaggacacttaagatctaatctctaagcaaatttcaagtatacagtacagtattattaactatagtcaccataatctacattagatctccagaatgtattcatcttatgacagaaagtttgtaccatttggctgtctctccactccccaccctc----cagcccatggcaaccaccattctattctctgcttctatgggttcagtttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29589122 369 + 173848474 TTATtttttccagctttactgaggcaca------aataaaataacatatatttaatgtgcacaatgtgat----------tatatataaatcaaaccaaattgtg-aaattattaccacaatcaaattaacacatccatcatctcacatcgttac--------tgtgtgtagggggagcggggagggtcaggacacttaagatctaatctctaagcaaatttcaagtatacagtacagtattattaactatagtcaccataatctacattagatctccagaatgtattcatcttatgacagaaagtttgtaccatttggctgtctctccactccccaccctc----cagcccatggcaaccaccattctattctctgcttctatgggttcagtttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5386745 368 +   6154872 TTATtttttccagctttactgaggcaca------aataaaataacatatatttaatgtgcacaatgtgat----------tatatataaatcaaaccaaattgtg-aaattattaccacaatcaaattaacgcatccatcatctcacattgttac--------tgtgtgta-ggggagtgtggagggtcaggacacttaagatctaatctctaagcaaatttcaagtatacagtacagtattattaactatagtcaccataatctacattagatctccagaatgtattcatcttatgacagaaagtttgtaccatttggctgtctctccactccccaccctc----cagcccatggcaaccaccattctattctctgcttctatgggttcagtttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29550754 369 + 172585720 TTATtttttccagctttactgaggcaca------aataaaattacatatatttaatgtgcacaatgtgat----------tatatataaatcaaaccgaattgtg-aaattattaccacaatcaaatggacacatccatcatctcacatagctac--------tgtgtgtagggggagcagggagggtcaggacacttaagatctaatctctaagcaaatttcaagtatacagtacagtttcattaactatagtcaccataatctacattagatctccagaatgtattcatcttataacagaaagtttgtaccatttgactgtccctccactccccaccctc----cagcccatggcaaccaccattctattctctgtttctgtgggttcagttttta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29211868 369 - 170955103 TTATtttttccagctttactgaggcaca------aataaaattacatatatttaatgtgcacaatgtgat----------tatatataaatcaaaccgaattgtg-aaattattaccacaatcaaatggacacatccatcatctcacatagctac--------tgtgtgtagggggagcagggagggtcaggacactcaagatctaatctctaagcaaatttcaagtatacagtacagtttcattaactatagtcaccataatctacattagatctccagaatgtattcatcttataacagaaagtttgtaccatttgactgtccctccactccccaccctc----cagcccatggcaaccaccattctattctctgtttctgtgggttcagttttta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2219877 369 -   2996164 TTATtttttccagctttactgaggcaca------aataaaattacatatatttaatgtgcacaatgtgat----------tatatataaatcaaaccgaattgtg-aaattattaccacaatcaaatggacacatccatcatctcacatagctac--------tgtgtgtagggggagcagggagggtcaggacacttaagatctaatctctaagcaaatttcaagtatacagtacagtttcattaactatagtcaccataatctacattagatctccagaatgtattcatcttataacggaaagtttgtaccatttgactgtccctccactccccaccctc----cagcccatggcaaccaccattctattctctgtttctgtgggttcagttttaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        6412 367 +    766320 --ATtttttccagttttattgaggcata------aataaaattgcatatatttaacgtgcacaatgtgat----------tatatagaaatcaaaccaaattgtg-aaattattaccataatcaaactaacacatccatcatctcacatagttat--------tgtgtgtagagggagcggggaggttgaggacacttaagatctaatctctaagcaaatttcaagtatacagtacagtattattaactacagtcaccatgatctacattagatctccagaatgtattcatcttatgccagaaattttgtaccatttgactgtctctccacttcccaccctg----cagcccatggcaaccaccattctattctctgcttctataagttcaacctttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28515261 369 -  71996105 TTATtttttccagttttactgaggcaca------aataaaattacatatatttaatgtgcacaatgtgat----------tatatataaatcaaaccgaattgtg-aaattattaccacaatcaaattgacacatccatcatctcacatagttac--------tgtgtgtagggggagcagggaaggtcaggacacttaagatctaatctctaagcaaatttcaagtatacagtacagtattattaactatagtcactctaatctacattagatctccagaacgtattcatcttatgacagaaattttgtaccatttgactgtctctccactccccaccctc----cagcccatggcaaccaccattctattctctgcttctgtgggttcagtttttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2228424 369 +   2316924 TTATtttttccagctttactgaggcaca------aataaaattacatatatttaatgtgcacaatgtgat----------tatatataaatcaaaccgaattgtg-aaattattaccacaatcaaattgacacatccatcatctcacatagctac--------tgtgtgtagggggagcagggagggtcaggacactgaagatctaatctctaagcaaatttcaagtatacagtacagttttattaactatagtcaccataatctacattagatctccagaatgtattcatcttataacagaaagtttgtaccatttgactgtccctccactccccaccctc----cagcccatggcaaccaccattctattctctgcttctgtgggttcagttttta
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2094213 367 -   3067355 TTATtttttccagctttactgaggcaca------aataaaattacatatatttaatgtgcacaatgtgat----------tatacataaatcaaaccaaattgtg-aaattattaccacaatcaaattgacacatccatcatctcacatagttac--------tgtgtgtagggggagcagggagggtcaggacacttaaggtctaatctctaagcaaatttcaagtgtacagtacagtattattaactttagtcactctaatctacattagatctccagaatgtattcatcttacgacag-aattttctaccatttgactgtctctccactccccaccctc----cagcccatggcaaccaccattctattctctgcttctatgggttcagtttt-a
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1703529 382 -   2232465 ---Ttttttcaagctttattgaggtataattcacaataaaactgtatacattctaagtgcacaatgtaatgatgtacgtatatgtacacattaatccaaattgtgaaaataattgccacaagcaaattaacacatccattatttcagatagttaccatttctatgtgtgt---gtgggtaagctgtgtgaagacacttaatatctaatttctgagaaattttcaagtatatagtacagtataattaactatagtcaccacgatctacattagatctccagaacttattcctgttgtaactgaaagtttgtatcat----------ctcttctttccacctctggggtagcccagggcaagaaccattttgttctctgcttctactagttcaacttttt
i otoGar3.GL873742         C 0 I 37
e dasNov3.JH570037            299387 1972 -    859332 I
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171589458 4909 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1491766.000000
s hg38.chr6_GL000254v2_alt    369112 340 +   4827813 ta-tttt-tttgatacacggtctcactctgtcacacaggctggagtgcagtggtgcgatcttggctcactgcaacctctgcctcccggcttcaagcaactctcctgcctcagcctccccagtagctgggactacaggcacccgccaccacgcccagctaatttttgta-ttttagtagaaactagttctcaccatgttggccaggctggtcttgaacccctgacctgaaatgatccacctgccttggcctcccaaagtgctgggatgacaggcgtgagccactgttcctatccgagttcaatttttttagattccacatgtaagtgttatcatac--atcttttg
s panTro5.chr6              29343736 340 + 175400573 aa-tttt-tttgatacacggtctcactctgtcacacaggctggagtgcagtggtgcgatcttggctcactgcagcctctgcctcccggcttcaagcaactctcctgcctcagcctccccagtagctgggactacaggcacccgccaccaagcccagctaatttttgta-ttttagtagaaactagttctcaccatgttggccaggctggtcttgaacccctgacctgaaatgatccacctgccttggcctcccaaagtgctgggatgacaggcgtgagccactgttcctatccgagttcaatttttttagattccacatgtaagtgttatcatac--atcttttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29589491 336 + 173848474 -a-tttt-tttgatacatggtctcactctgt---acaggctggagtgcagtggtgcgatcttggctcactgcagcctctgcctcccggcttcaagcaactctcctgcctcagcctccccagtagctgggactacaggcacccgccaccaagcccagctaatttttgta-ttttagtagaaactagttctcaccatgttggccaggcttgtcttgaacccctgacctgaaatgatccacctgccttggcctcccaaagtgctgggatgacaggcgtgagccactgttcctatccgagttcaatttttttagattccacatgtaagtgttatcatac--atcttttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5387113 341 +   6154872 ta-tttt-tttgacacagggtctcactctgtcacacaggctggagtgcagtggtgtgatcttggctcactgcaacctctgcctcccggcttcaagcaactctcctgcctcagcctccccagtagctgggactacaggcactcgccaccacgcccagctaatttttgtatttttagtagaaactagttctcaccatgttggccaggctggtcttgaacccctgacctgaaatgatccacctgccttggcctcccaaagtgctgggatgacaggcatgagacactgttcctatccgagttcaatttttttagattccacatgtaagtgttatcatac--atcttttg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29551123 342 + 172585720 aa-ttttttttgatatagggtctcactctgtctcacaggctggagtgcagtggtgtgatcttggctcactgcaacctctgcctcccggcttcaagcaactctcctgcctcagcctccccagtagctgagactacaggcacccgccaccacacccagctaa-ttttgtatttttagtagaaacaagttctcatcatgctgaccaggctggtcttgaacccctggcctgaaaagatccacctgccttggcctcccaaagtgctgggcttacaggcgtgaaccacggttcctagctgagttcaaattttttagattccacatgtaagtgttatcatac-ttttttttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29212237 341 - 170955103 aa-ttttttttgatatagggtctcactctgtctcacaggctggagtgcagtggtgtgatcttggctcactgcaacctctgcctcccggcttcaagcaactctcctgcctcagcctccccagtagctgagactacaggcacccgccaccacacccagctaa-ttttgtatttttagtagaaacaagttctcatcatgctgaccaggctggtcttgaacccctggcctgaaaagatccacctgccttggcctcccaaagtgctgggcttacaggcgtgaaccacggttcctagctgagttcaaattttttagattccacatgtaagtgttatcatac--tttttttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2220246 343 -   2996164 aatttttttttgatacagggtctcactctgtctcacaggctggagtgcagtggtgtgatcttggctcactgcaacctctgcctcccggcttcaagcaactctcctgcctcagcctccccagtagctgagactacaggcacccgccaccacacccagctaa-ttttgtatttttagtagaaacaagttctcatcatgctgaccaggctggtcttgaacccctggcctgaaaagacccacctgccttggcctcccaaagtgctgggcttacaggcgtgaaccacggttcctagctgagttcaaattttttagattccacatgtaagtgttattatac-ttttttttg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        6779 331 +    766320 ---tattttttgatacagggtcttactctgtcacacacgctggagtgc--------gatctcgactcactgcaacttctgcctcctggcttcaattaattctcctgcctcagcctccccagtaactgggactacaggtgcccaccaccatgcccagctaatttttgtatttttagtagagatagggtctcaccattttggcaaggagggtcttgaacccttgacctgaaatgatccacctgcctcagcctcccacagtgctgggattacaggtttgagccattgtgcctgtccgagttcaaa-gttttagatttcacatgtaagtcatatcatac--atcttttg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28515630 341 -  71996105 ta-ttttgtttgatacagggtctcactctgtcacacaggctggagtgcagtggtgtgatcttggctcactgcaacctctgcttcccggcttcaagcaactgtcctgcctcagcctccccagcagctgagactacaggcacccaccaccacacccagctaa-ttttgtatttttaatagaaacaagttctcaccatgttgaccaggctggtcttgaacccctggcctgaaaagatccacctgccttggcctcccaaactgctgggcttacaggcgtgagccactgttcttatctgagttcaaattttttagattccacatgtaagtgttatcatac--tttttttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2228793 342 +   2316924 aa-tttt-tttgatacagggtctcactctgtctcacaggctggagtgcagtggtgtgatcttggctcactgcaacctctgcctcccagcttcaagcaactctcctgcctcagcctccccagtagctgagactataggcacccgccaccacacccagccaa-ttttttatttttagtagaaacaagttctcatcatgctgaccaggctggtcttgaacccctggcctgaaaagatccacctgccttggcctcccaaagtgctgggcttacaggcgtgaaccactgttcctagctgagttcaaattttttagattccacatgtaagtgttatcatactttttttttg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2094580 337 -   3067355 aa-ttttttttgatacagagtctcactctgccacacaggctggagtgccgtggtgtgatcttggctcactgcaacctctgcctcccggcttcaagcaactctcctgcttcagcctccccagtagctgagactataggcacccaccactacacccagctaa-ttttgtatttttagtagaaacaagttctcaccatgttgaccaggctggtcttgaacccctggcctgaaaagatccacctgccttggcctcccaaagtgctgggcttacagacgtgagccactgttc----ctgagttcaaattttttagattccacatgtaagtgttatcatac--tttttttg
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            299387 1972 -    859332 I
e canFam3.chr35             26138836 1270 +  26524999 T
e otoGar3.GL873742           1703911  37 -   2232465 I
e calJac3.chr4             171589458 4909 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1081768.000000
s hg38.chr6_GL000254v2_alt    369452 253 +   4827813 tctttctgtgtgtggtttatttcacttagcacaatatcctcca-gttcatccatgttataacaaatggcaggattttctttttat---tggctgaataatatttctcgc------------------------------------------tgtgtgtgtgtgtgtgtgtgtgt------------gtgtgtgtgtgtatgagatcacattttctttatccattcctccatcaatggatgcttaggttgtttcttcatc---------------ttggctgtcatgaatagtgctgcaatgaacat-gggggcatagatacctcttc
s panTro5.chr6              29344076 237 + 175400573 tctttctgtgtgtggtttatttcacttagcacaatatcctcca-gttcatccatgttataacaaatggcaggattttctttttat---tggctgaataatatttctcgc------------------------------------------tgtgtgtgtgtgtgtgtgtgtgt----------------------------gatcacattttctttatccattcctccatcaatggatgcttaggttgtttcttcatc---------------ttggctgtcatgaataatgctgcaatgaacat-gggggcatagatacctcttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29589827 237 + 173848474 tctttctgtgtgtggtttatttcacttagcacaatatcctcca-gttcatccatgttataacaaatggcaggattttctttttat---tggctgaataatatttctcgc------------------------------------------tgtgtgtgtgtgtgtgtgtgtgt----------------------------gatcacattttctttatccattcctccatcaatggatgcttaggttgtttcttcatc---------------ttggctgtcatgaataatgctgcaatgaacat-gggggcatagatacctcttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5387454 254 +   6154872 tctttctgtgtgtggtttatttcacttaacacaatatcctcca-gttcatccatgttataacaaatggcaggattttctttttat---tggctgaataatatttctgtg------------------------------------------tgtgtgtgtgtgtgtgtgtgtgt--------gtgtgtgtgtgtgtgtgtgagatcacattttctttatccatttct---tcaatggatgcttaggttgtttcttcatc---------------ttggctgtcatgaataatgctgcaatgaacat-gggggcatagatacctcttc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29551465 255 + 172585720 tctttctgtgtgtggtttatttcacttatcacaatatcctcca-gttcatccatgttataacaaatggcaggattttctttttat---tggctgaataatatttctctctctctctctctctctc--------------------------tgtgtgtgtgtgtgtgtgagaga--------------------------gagatcagattttctttatccattcttccatcaatggatgcttagattgtttcttcatg---------------ttggctatcatgtataatgctgcaatgaacgc-gggggcatagatacttcttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29212578 281 - 170955103 tctttctgtgtgtggtttatttcacttatcacaatatcctcca-gttcatccatgttataacaaatggcaggattttcttttcat---tggctgaataatatttctctctctctctctctctctctctctctctctctctctgt------gtgtgtgtgtgtgtgtgtgtgtgt--------------------gagagagagatcagattttctttatccattcttccatcaatggatgcttagattgtttcttcatc---------------taggctatcatgtataatgctgcaatgaacac-gggggcatagatacttcttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2220589 257 -   2996164 tctttctgtgtgtggtttatttcacttatcacaatatcctcca-gttcatccatgttataacaaatggcaggattttcttttcat---tggctgaataatatttctctctctctctctctctctctc------------------------tgtgtgtgtgtgtgtgtgtgtgt--------------------------gagatcagattttctttatccattcttccatcaatggatgcttagattgtttcttcatc---------------ttggctatcatgtataatgctgcaatgaacac-gggggcatagatacttcttc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        7110 237 +    766320 tctttctgtgtctggtttatttcacgtagtacaacgtactc------catctgtgttctaaaaatcagcaggattttcttcttttttatggttgaataatatttcagtg------------------------------------------tgtgtgtgtttgtgcgtgtgtgt--------------------------gaaatgacatttttaaaatccattcctctgtcagtggatgcttaggttgtttcttcatc---------------ctagctatcatgaataatgctacaatgaacat-gggagcatagacatctcttc
i cerAty1.NW_012002711v1   C 0 I 2545
s chlSab2.chr17             28515971 278 -  71996105 tctttctgtgtgtggtttatttcacttatcacaatatcctcca-gttcatccatgttataacaaatggcaggattttctttttat---tggctgaataatatttctctctctctctctctc-----------------------------ctctgtgtgtgtgtgtgtgtgtatgagagagagagagagagagagagagagagatcagattttctttatccattcttccatcaatggatgcttagattgtttcttcatc---------------ttggctatcatgtataatgctgcaatgaacac-gggggcatagatacctcttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2229135 287 +   2316924 tctttctgtgtgtggtttatttcacttatcacaatatcctcca-gttcatccatgttataacaaatggcaggattttctttttat---tggctgaataatatttctctctctctctctctctctctctctctctctctctttctctctctctctgtgtgtgtgtgtgtgtgtgt--------------------gagagagagatcagattttctttatccattcttccatcaatggatgcttagattgtttcttcatc---------------ttggctatcatgtataatgctgcaatgaacac-gggggcatagatacctcttc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2094917 244 -   3067355 tctttctgtgtgtggtttatttcacttatcacaatatcctcca-gttcatccatgttataacaaatggcaggattttctttttac---tggctgaataatatttctctctctctctctctctctc--------------------------------------tgtgtgtgtgt--------------------------gagatcagattttctttatccattcttccatcggtggatgcttagattgtttcttcatc---------------ttggctatcatgtataatgctgcaatgaacacggggggcatagatacctcttc
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1703948 226 -   2232465 tctttccatgtctagcttatttcacttagcacaatgtactccaggttcatctatcctgcaacaaacagcaagatt--------------------ataatattc-----------------------------------------------tat-----tgtgtatgtctgtgt----------------------------gatcacatgcttttaatctattcctccgtcaatggacacttaggttatttccttacctcataggtaatagtattagctattgtgaataatgctgaaatgaacat-gggagtacagttgtctcttt
i otoGar3.GL873742         I 37 C 0
e dasNov3.JH570037            299387 1972 -    859332 I
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171589458 4909 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=27918.000000
s hg38.chr6_GL000254v2_alt    369705 7 +   4827813 ggaatac
s panTro5.chr6              29344313 7 + 175400573 ggaatac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29590064 7 + 173848474 ggaatac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5387708 7 +   6154872 gagatac
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29551720 7 + 172585720 gagatac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29212859 7 - 170955103 gagatac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2220846 7 -   2996164 gagatac
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28516249 7 -  71996105 aagatac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2229422 7 +   2316924 gagatac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2095161 7 -   3067355 gagatac
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1704174 7 -   2232465 gaggtac
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            299387 1972 -    859332 I
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171589458 4909 - 171630274 T
e cerAty1.NW_012002711v1        7347 2545 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=239079.000000
s hg38.chr6_GL000254v2_alt    369712 58 +   4827813 ttacttcatttttcttggataa----gtacccagtg--ggattattgggatcacatCACATCTC-----
s panTro5.chr6              29344320 58 + 175400573 ttacttcatttttcttggataa----gtacccggtg--ggattattgggatcacatCACATCTC-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29590071 58 + 173848474 ttacttcatttttcttggataa----gtacccggtg--ggattattgggatcacatCACATCTC-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5387715 58 +   6154872 ttacttcatttttcttggataa----gtacccagtg--ggattgttgggatcacatCACATCTC-----
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29551727 58 + 172585720 ttacttcatttttcttggataa----atacccagtg--ggattgttgggatcacatCACATCTC-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29212866 58 - 170955103 ttacttcatttttcttggataa----atacccagtg--ggattgttgggatcacatCACATCTC-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2220853 58 -   2996164 ttacttcatttttcttggataa----atacccagtg--ggattgttgggatcacatCACATCTC-----
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28516256 58 -  71996105 ttatttcatttttcttggataa----atacccagtg--ggattgttgggatcacatCACATCTC-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2229429 58 +   2316924 ttacttcatttttcttggataa----atacccagtg--ggattgttgggatcacatCACATCTC-----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2095168 58 -   3067355 ttactttatttttcttggataa----atacccagtg--ggattgttgggatcacatCACATCTC-----
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1704181 34 -   2232465 ---------------------------aacccggtg--ggattgct-ggatcatgccatagttc-----
i otoGar3.GL873742         C 0 I 8679
s dasNov3.JH570037            301359 56 -    859332 TTACCTAATTCTTCTTGAATAATGTGGCCCACAATGAAGGAATGCT-------------ATTTCCTGTG
i dasNov3.JH570037         I 1972 C 0
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171589458 4909 - 171630274 T
e cerAty1.NW_012002711v1        7347 2545 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=905717.000000
s hg38.chr6_GL000254v2_alt    369770 186 +   4827813 ACACAGACTTCACAAAATATGAGAACATAGATTCCTCCTGCCTCCGTGGAAATCTTACCATTT-GTAATATGTCATGTGTCACTCCAGCTTCTCAAGATCTACAAGACTCTT---ttcttttcaaatttattgaagtataatttatgtacaaagaaatctacacattttaagtatatagttcaatgaatt
s panTro5.chr6              29344378 186 + 175400573 ACACAGACTTCACAAAATGTGAGAACATAGATTCCTCCTGCCTCCATGGAAATCTTACCATTT-GTAATATGTCATGTGTCACTCCAGCTTCTCAAGATCTACAAGACTCTT---ttcttttcaaatttattgaagtataatttatgtacaaagaaatctacacattttaagtatatagttcaatgaatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29590129 186 + 173848474 ACACAGACTTCACAAAATGTGAGAACATAGATTCCTCCTGCCTCCATGGAAATCTTACCATTT-GTAATATGTCATGTGTCACTCCAGCTTCTCAAGATCTACAAGACTCTT---ttcttttcaaatttattgaagtataatttatgtacaaagaaatctacacattttaagtatatagttcaatgaatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5387773 185 +   6154872 ACACAGATTTCACAAAATGTGAGAACATAGATTCCTCCTGCCTCCGTCGAAATCTTACCATCT-GTAATATGTCATGTGTCACTCCAGCTTCTCAAGATCTACAAGACTCTT---ttcttttcaaatttattgaagtataattcatgtacaaagaaatctacacattttaagtatatagttcaatgaa-t
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29551785 187 + 172585720 ACACAGACTTCACAAAATGTGAGAACGTAGATTCCTCCTGCCTCCATGGAAATCTTGCCATTTTGTAATATGTCATGTGTCACTCCAGCTTCTCATGATCTACAAGACTCTT---ttcttttcaaatttattgaagtataatttatgtacaatgaaatctacacattttaagtatatagttcaatgaatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29212924 187 - 170955103 ACACAGACTTCACAAAATGTGAGAACGTAGATTCCTCCTGCCTCCATGGAAATCTTGCCATTTTGTAATATGTCATGTGTCACTCCAGCTTCTCATGATCTACAAGACTCTT---TTCTTTtcaaatttattgaagtataatttatgtacaatgaaatctacacattttaagtatatagttcaatgaatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2220911 187 -   2996164 ACACAGACTTCACAAAATGTGAGAACGTAGATTCCTCCTGCCTCCATGGAAATCTTGCCATTTTGTAATATGTCATGTGTCACTCCAGCTTCTCATGATCTACAAGACTCTT---ttcttttcaaatttattgaagtataatttatgtacaatgaaatctacacattttaagtatatagttcaatgaatt
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28516314 187 -  71996105 ACACAGACTTCACAAAATGTGAGAACATAGATTCCTCCTGCCTCCATGGAAATCTTGCCATTTTGTAATATGTCATGTGTCACTCCAGCTTCTCATGATCTACAAGACTCTT---TTCttttaaaatttattgaagtataatttatgtacaatgaaatctacacattttaagtatatagttcaatgcatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2229487 185 +   2316924 ACACAGACTTCACAAAATGTGAGAACGTAGATTCCTCCTGCCTCCATGGAAATCTTGCCATTTTGTAATATGTCATGTGTCACTCCAGCTTCTCATGATCTACAAGACTCTT---TTCTTTTCAAATTTattgaagtataatttatgtacaatgaaatct--acattttaagtatatagttcaatgaatt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2095226 187 -   3067355 ACACAGACTTCACAAAATGTGAGAACATAGATTCCTCCTGTCTCCATGGAAATCTTGCCATTTAGTAATATGTCATGTGTCACTCCAGCTTCTCATGATATACAAGACTCTT---ttcttttcaaatttattgaagtataatttatgtacaatgaaatctacacattttaagtatatagttcaatgaatt
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742            524674 188 +   2232465 TCACACATTTCACACAATGTGAGAACAGAGATTTCTCCTTCCTCCATGGAAATCTTACTTCCATTTAATACCTCATGTATCAGTCCAACTTCTCACCATCTATATGGCTCCT-CCTTCTTTTCCAGtttattgaaataaaatttacatatactaaaatctacacatttaaagtatagagttcaatgag-t
i otoGar3.GL873742         n 8679 C 0
s dasNov3.JH570037            301415 187 -    859332 ACAAAAGCTTGACAAGACATGAAAAC--AGATTCCTCCTGCCAACAAAGAAATCTTACTATTT-GGGAGATCTCATGTATTAAGTCACCCTTTCACCATGTAAATGGATTTAATATTTTTGtcagactcattgaactacgagatacgtataatacaatctaccagttttaagtgtatagttcaatgagtt
i dasNov3.JH570037         C 0 I 33
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171589458 4909 - 171630274 T
e cerAty1.NW_012002711v1        7347 2545 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=145780.000000
s hg38.chr6_GL000254v2_alt    369956 33 +   4827813 ttTTTATATTTTCTTTTTATTGTATTTTTGTTA
s panTro5.chr6              29344564 33 + 175400573 ttTTTATATTTTCTTTTTATTGTATTTTTGTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29590315 33 + 173848474 ttTTTATATTTTCTTTTTATTGTATTTTTGTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5387958 33 +   6154872 tttTTATATTTTCTTTTTATTGTATTTTTGTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29551972 33 + 172585720 ttttcatattttcTTTTCATTGTATTTTTGTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29213111 33 - 170955103 ttTTCATATTTTATTTTCATTGTATTTTTGTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2221098 33 -   2996164 ttTTCATATTTTCTTTTCATTGTATTTTTGTTA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28516501 33 -  71996105 ttTTCGTATTTTCTTTTCATTGTATTTTTGTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2229672 33 +   2316924 ttttcatatTTTCTTTTCATTGTATTTTTGTTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2095413 33 -   3067355 ttttcatatcttcTTTTCATTGTATCTTTGTTA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742            524862 32 +   2232465 ttttcatattttcTTCT-ATTATATTTTTATTA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            301602 33 -    859332 I
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171589458 4909 - 171630274 T
e cerAty1.NW_012002711v1        7347 2545 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=506028.000000
s hg38.chr6_GL000254v2_alt    369989 114 +   4827813 GACATCAAATATTGGATTTAATAAGCTATCGGAAAAAGTGTATAATT------ATAATCCTTTATACTGTAACAG---TACTACAC---AACTTATA----AAGCACATTAATATATTTTG-------TTTCATTAG
s panTro5.chr6              29344597 114 + 175400573 GACATCAAATATTGGATTTAATAAGCTATCAGAAAAAGTGTATAATT------ATAATCCTTTATACTGTAACAG---TACTACAC---AACTTATA----AAGCACATTAATATATTTTG-------TTTCATTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29590348 114 + 173848474 GACATCAAATATTGGATTTAATCAGCTATCAGAAAAAGTGTATAATT------ATAATCCTTTATACTGTAACAG---TACTACAC---AACTTATA----AAGCACATTAATATATTTTG-------TTTCATTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5387991 114 +   6154872 GACATCAAATATTGGATTTAATAAGCTATCGGAAAAAGTGTATAATT------ATAATCCTTTATACTGTAACAG---TACTACAC---AACTTATA----AAGCACATTAATATATTTTG-------TTTCATTAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29552005 109 + 172585720 GACATCAAATATTGGATTTAATAAGCGATCAGAAAAAGTGTATAATT------ATAATCCTT-----TATAACAG---TACTATAC---AACTTATA----AAGCACATTAATATACTTTG-------TTTCATTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29213144 114 - 170955103 GACATCAAATATTGGATTTAATAAGCGATCAGAAAAAGTGTataatt------ataatcctttatactataacag---tactatac---aacttata----aagcacattaatatactttg-------tttcattag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2221131 114 -   2996164 GACATCAAATTTTGGATTTAATAAGCGATCAGAAAAAGTGTATAATT------ATAATCCTTTATACTATAACAG---TACTATAC---AACTTATA----AAGCACATTAATATACTTTG-------TTTCATTAG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28516534 114 -  71996105 GACATCAAATATTGGATTTAATAAGTGATCAGAAAAAGTGTataatt------ataatcctttatactgtaacag---tactatac---aacttata----aagcacattaatatactttg-------tttcattag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2229705 114 +   2316924 GACATCAAATATTGGATTTAATAAGCGATCAGAAAAAGTGTataatt------ataatcctttatagtgtaacag---tactatac---aacttata----aagcacattaatatactttg-------tttcattag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2095446 114 -   3067355 GCCATCAAATATTGGATTTAATAAGCGATCAGAAAAAGTGTATAATT------ATAATCCTTTATACTGTAACAG---TACTACAC---AACTTATA----AAGCACATTAATATACTTTG-------TTTCATTAG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742            524894 118 +   2232465 GACATTGAATATC-AATTTAATAAAAGA-AAGAAAAAATGTACAATTattataatagtcttttacattgtaatag---cactatac---atcaggta----aagcacatcaatatattttg-------tttcattag
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            301635 123 -    859332 gatatagaatatt----ttcat----gatttccaaaagtATTTTTTC------AGAACCTTTATTACAGTTATAGATATATTTTTCAGAAACTTTTGTTATAGGTATATTTATATATTTTTCAGAATCTTTTATTAG
i dasNov3.JH570037         I 33 I 275
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171589458 4909 - 171630274 T
e cerAty1.NW_012002711v1        7347 2545 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1036644.000000
s hg38.chr6_GL000254v2_alt    370103 233 +   4827813 AATTTTGGTCATCATAGAAACCCT-AAAGCTTTGTTGACTATTAGCCTCTTGAAACAAAAGAAAAataagatataaacattattgttcctatgttaaagattaggaaattgagtctcagagagattaagtagtcttgtctaaatgcacgcactaataaatggcaaatttgagtctcaaagacaggtttctcaatatcaaatTGAAAGAatagttcagtgag-tctgacaaatgta
s panTro5.chr6              29344711 233 + 175400573 AATTTTGGTCATCATAGAAACCCT-AAAGCTTTGTTGACTATTAGCCTCTTGAAACAAAAGAAAAataagatataaacattattgttcctatgttaaagattaggaaattgagtctcagagagattaagtagtcttgtctaaatgcacgcactaataaatggcaaatttgagtctcaaagacaggtttctcaatatcaaatTGAAAGAatagttcagtgag-tttgacaaatgta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29590462 233 + 173848474 AATTTTGGTCATCATAGAAACCCT-AAAGCTTTGTTGACTATTAGCCTCTTGAAACAAAAGAAAAataagatataaacattattgttcctatgttaaagattaggaaattgagtctcagagagattaagtagtcttgtctaaatgcacgcactaataaatggcaaatttgagtctcaaagacaggtttctcaatatcaaatTGAAAGAatagttcagtgag-tttgacaaatgta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5388105 233 +   6154872 AATTTTGGTCATCATAGAAACCCT-AAAGCTTTGTTGACTATTTGCCTCTTGAAACAAAAGAAAAataagatataaacattattgttcctatgttaaagattaggaaattgagtctcagagagattaagtagtcttgtctaaatgcacgcactaataaatggcaaatttgagtctcaaagacaggtttctcaatatcaaatTGAAAGAatagttcagtgag-tttgacaaatgta
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29552114 233 + 172585720 AATTTTGGTCATCATAGAAACTCT-AAAGCTTTGTTGACTATTAGCCTCTTGAAACAAAGGAAAAataagatataaacattgttgttcctacgttaaaggttaggaaattgagtctcagagagattaagtaatcttgtctaaacgcacacactaataaatggcaaatttgagtctcaaagacaggtctctcAATATCAGATTGAAAGACTagttcagtgag-tttgacaaatgta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29213258 233 - 170955103 aattttggtcatcatagaaaccct-AAAGCTTTGTTGACTATTAGCCTCTTGAAACAAAGGAAAAataagatataaacattgttgttcctacgttaaaggttaggaaattgagtctcagagagattaagtaatcttgtctaaacgcacacactaataaatggcaaatttgagtctcaaagacaggtctctcAATATCAGATTGAAAGACTagttcagtgag-tttgacaaatgta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2221245 233 -   2996164 AATTTTGGTCATCATAGAAACCCT-AAAGCTTTGTTGACTATTAGCCTCTTGAAACAAAGGAAAAataagatataaacattgttgttcctacgttaaaggttaggaaattgagtctcagagagattaagtaatcttgtctaaacgcacacactaataaatggcaaatttgagtctcaaagacaggtctctcAATATCAGACTGAAAGACTagttcagtgag-tttgacaaatgta
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28516648 233 -  71996105 aattttggtcatcatagaaaccct-AAAGCTTTGTTGACTATTAGCCTCTTGAAACAAAGGAAAAataagatataaacattgttgttcctacgttaaagtttaggaaattgagtctcagaaagattaagtagtcttgtctaaatgcacacactaataaatggcaaatttgagtctcaaagacaggtctctcgatatcaaatTGAAAGAacagttcagtgag-tttgacaaatgta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2229819 233 +   2316924 aattttgatcatcagagaaaccct-aaagctttgttggctattagcctcttgaaacaaaggaaaaataagatataaacattgttgttcctacattgaaggttaggaaattgagtctcagagagattaagtagtcttgtctaaacgcacacactcataaatggcaaatttgagtctcaaagacaggtctctcAATATCAGATTGAAAGACTagttcagtgag-tttgacaaatgta
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2095560 233 -   3067355 AATTTTGGTCATCATAGAAACCCT-AAAGCTTTGTTGGCTGTTAGCCTCTTGAAACAAAGGAAAAATAAGATATAAACattgttgttcctacgttaaaagttgggaaattgagtcttagagagattatgtagtcttgtctaaatgcacacactaataaatggcaaatttgagtctcaaagacaggtctctcAATATCAGATTGAAAGAatagttcagtgag-tttgacaaatgta
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742            525012 213 +   2232465 agttttggtcattacagaaatcctAAAAGCTTTGTTGACTATTAGTCTCTGGAAAGAAAAGGAAAAGAAAATATAAACACTA---TTTGCATATTAAAGAT-----------------gagaaattaagtag-cttgtccaaatgcacacatgaataaatggcagatttgagtctcatagccagatctcttaatttca-aTTGTAAGAGCAGTTCAATAAATTTTGACAAATTTA
i otoGar3.GL873742         C 0 I 284
e dasNov3.JH570037            301758 275 -    859332 I
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171589458 4909 - 171630274 T
e cerAty1.NW_012002711v1        7347 2545 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=145626.000000
s hg38.chr6_GL000254v2_alt    370336 36 +   4827813 taattgtgtaaatgccaccacaatcaagattatagg
s panTro5.chr6              29344944 36 + 175400573 taattgtgtaaatgccaccacaatcaagattatagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29590695 36 + 173848474 taattgtgtaaatgccaccacaatcaagattatagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5388338 36 +   6154872 taattgtgtaaatgccaccacaatcaagattatagg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29552347 36 + 172585720 taattgtgtaaataccaccacaatcaagattatagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29213491 36 - 170955103 taattgtgtaaataccaccacaatcaagattatagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2221478 36 -   2996164 taattgtgtaaataccaccacaatcaagattatagg
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28516881 36 -  71996105 taattgtgtaaataccaccacaatcaagattgtagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2230052 36 +   2316924 taattgtgtaaataccaccacaatcaagatcatagg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2095793 36 -   3067355 taattgtgtaaatatcaccacaatcaagattatagg
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            301758 275 -    859332 I
e canFam3.chr35             26138836 1270 +  26524999 T
e otoGar3.GL873742            525225 284 +   2232465 I
e calJac3.chr4             171589458 4909 - 171630274 T
e cerAty1.NW_012002711v1        7347 2545 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=100392.000000
s hg38.chr6_GL000254v2_alt    370372 25 +   4827813 acatttctattactccccaaagaac------
s panTro5.chr6              29344980 25 + 175400573 acatttctattactccccaaagaac------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29590731 25 + 173848474 acatttctattactccccaaagaac------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5388374 25 +   6154872 acatttctattactccccaaagaac------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29552383 28 + 172585720 acatttctattactccccaaagaactt-g--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29213527 28 - 170955103 acatttctattactccccaaagaactt-g--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2221514 28 -   2996164 acatttctattactccccaaagaactt-g--
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28516917 28 -  71996105 acatttctattactccccaaagaactt-g--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2230088 28 +   2316924 acatttctattactccccaaagaactt-g--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2095829 30 -   3067355 acatttctattactccccaaagaactt-gtt
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742            525509 29 +   2232465 acatttctactactcctgaaagaatttag--
i otoGar3.GL873742         I 284 C 0
e dasNov3.JH570037            301758 275 -    859332 I
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171589458 4909 - 171630274 T
e cerAty1.NW_012002711v1        7347 2545 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=3214607.000000
s hg38.chr6_GL000254v2_alt    370397 692 +   4827813 ttccgttttgta----------gtcaactttccccttttagtcatagcctgaggcag-cattaattttctctaaatgtacttggtttttcccacttttagaatttcaaataattgcaatcatgcagtgtgtaatctttgggtgtggcttgtttcatttagcatgatgttttt-----gacatttattatgttgccacatgtatcagttac-tttttcctttttattgcttgttagaactccattgtacgaatgtgcgacaatttatccatttatctg-tgaagggc-tttgggagtatttaaaatttttggctattatgaataatgctgctatgaaaatttgtatacaagtgtttgtgtggatgcatgttttcacttaatttgggtaaataccttttatttgtacctctccagga-----------ggaccacatgcttagtgtatattatct-ttatgagatactg-caaaaatgttttc-aagtggctgttctattttcacttcaaacagcagtgtatgagagttccaaatgaactcacattctttctaatacttggtattgtcagtttttatacttttcacctctcaagttaggttac------------ctgtggctataatttgca----ttgaggggtgttgacattgaccatcctcttgtgtgcttttcatatgcttcatatatgttattttgtgtagcttctgttcaaa-----tattttactc---------actttaaaaattgg
s panTro5.chr6              29345005 691 + 175400573 ttccgttttgta----------gtcaactctccccttttagtcatagcctgaggcag-cattaattttctctaaatatacttggttttt-ccacttttagaatttcaaataattgcaatcatgcggtgtgtaatctttgggtgtggcttgtttcatttagcatgatgttttt-----gacatttattatgttgccacatgtatcagttac-tttttcctttttattgcttgttagaactccattgtacgaatgtgcaacaatttatccatttatctg-tgaagggc-tttgggagtatttaaaatttttggctattatgaataatgctgctatgaaaatttgtatacaagtgtttgtgtggatgcatgttttcacttaatttgggtaaataccttttatttgtacctctccagga-----------ggaccacatgcttagtgtatattatct-ttatgagatactg-caaaaatgttttc-aagtggctgttctattttcacttcaaacagcagtgtatgagagttccaaatgaactcacattctttctaatacttggtattgtcagtttttatacttttcacctctcaagttaggttac------------ctgtggctataatttgca----ttgaggggtgttgacgttgaccatccttttgtgtgcttttcatatgcttcatatatgttattttgtgtagtttctgttcaaa-----tattgtactc---------actttaaaaattgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29590756 691 + 173848474 ttccgttttgta----------gtcaactctccccttttagtcatagcctgaggcag-cattaattttctctaaatgtacttggttttt-ccacttttagaatttcaaataattgcaatcatgcagtgtgtaatctttgggtgtggcttgtttcatttagcatgatgttttt-----gacatttattatgttgccacatgtgtcagttac-tttttcctttttattgcttgttagaactccattgtacgaatgtgcaacaatttatccatttatctg-tgaagggc-tttgggagtatttaaaatttttggctattatgaataatgctgctatgaaaatttgtatacaagtgtttgtgtggatgcatgttttcacttaatttgggtaaataccttttatttgtacctctccagga-----------ggaccacatgcttagtgtatattatct-ttatgagatactg-caaaaatgttttc-aagtggctgttctattttcacttcaaacagcagtgtatgagagttccaaatgaactcacattctttctaatacttggtattgtcagtttttatacttttcacctctcaagttaggttac------------ctgtggctataatttgca----ttgaggggtgttgacgttgaccatccttttgtgtgcttttcatatgcttcatatatgttattttgtgtagtttctgttcaaa-----tattgtactc---------actttaaaaattgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5388399 690 +   6154872 ttccgttttgta----------gtcaactctccccttttagtcatagcctgaggcag-cattaattttctctaaatgtacttggttttt-ccacttttagaatttcaaataattgcagtcatgcagtatgtaatctttgggtgtggcttgtttcatttagcatgatg-tttt-----gacatttattatgttgccacatgtatcagttac-tttttcctttttattgcttgttagaactccattgtacgaatgtgcaacaatttatccatttatctg-tgaagtgc-tttgggagcatttaaaatttttggctattatgaataatgctgctatgaaaatttgtatacaagtgtttgtgtggatgcatgttttcacttaatttgggtaaataccttttatttgtacctctccagga-----------ggaccacatgcttagtgtatattatct-ttatgagatactg-caaaaatgttttc-aagtggctgttctattttcacttcaaacagcagtgtatgagagttccaaatgaactcacattctttctaatacttggtattgtcagtttttatactgttcacctctcaagttaggttac------------ctgtggctataatttgca----ctgaggggtgttgacgttgaccatccttttgtgtgcttttcatatgcttcatatatgttattttgtgtagtttctgttgaaa-----tattttactc---------actttaaaaattgg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29552411 692 + 172585720 ttttgtcttgta----------gtcaactctccccttttagtcataggctgaggcag-cattaattttctctaaatgtacttggttttt-ccatttttagaatttcaaataattgcaatcctgcagtatgtaatctttgggtatgtcttgtttcatttagtgtgatgttttt-----gacatttattatgttgctacatgtatcagttac-tttttcctttttattgcttgttagagctccattatatgaatatgctacaatttatccatttatctg-tgatgggc-tttgggagtatttaaaatttttggctattatgaataatgctgctatgaaaatttgtacgcaagtgtttgtgtggatgcatgttttcacttaatttgggtaaataccttttatttgtacctctccagga-----------ggaccacatgcttagtgtatattatct-ttatgaactactg-caaaaatgttttcaaagtggctgttctattttcacttcaaacagcagtgtatgagagttccaactgaactcacattctttctaatacttggtgttgtcagtttttatactttttacctcttaatttaggttac------------ctgtggctataatttgca----ttgagggatgtcgacgttgaccatcattttgtgtgcttttcacatgcttcttatacgttattttgtgtagtttctgttcaga-----tattttactc---------actttaaaaattgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29213555 692 - 170955103 ttttgtcttgta----------gtcaactctccccttttagtcataggctgaggcag-cattaattttctctaaatgtacttggttttt-ccatttttagaatttcaaataattgcagtcctgcagtatgtaatctttgggtatgtcttgtttcatttagtgtgatgttttt-----gacatttattatgttgctacatgtatcagttac-tttttcctttttattgcttgttagagctccattatatgaatatgctacaatttatccatttatctg-tgatgggc-tttgggagtatttaaaatttttggctattatgaataatgctgctatgaaaatttgtacgcaagtgtttgtgtggatgcatgttttcacttaatttgggtaaataccttttatttgtacctctccagga-----------ggaccacatgcttagtgtatattatct-ttatgaactactg-caaaaatgttttcaaagtggctgttctattttcacttcaaacagcagtgtatgagagttccaactgaactcacattctttctaatacttggtgttgtcagtttttatactttttacctcttaatttaggttac------------ctgtggctataatttgca----ttgagggatgtcgacgttgaccatcattttgtgtgcttttcacatgcttcttatacgttattttgtgtagtttctgttcaga-----tattttactc---------actttaaaaattgc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2221542 692 -   2996164 ttttgtcttgta----------gtcaactctccccttttagtcataggctgaggcag-cattaattttctctaaatggacttggttttt-ccatttttagaatttcaaataattgcaatcctgcagtatgtaatctttgggtatgtcttgtttcatttagtgtgatgttttt-----gacatttattatgttgctacatgtatcagttac-tttttcctttttattgcttgttagagctccattatatgaatatgctacaatttatccatttatctg-tgatgggc-tctgggagtatttaaaatttttggctattatgaataatgctgctatgaaaatttgtacgccagtgtttgtgtggatgcatgttttcactgaatttgggtaaataccttttatttgtacctctccagga-----------ggaccacatgcttagagtatattatct-ttatgaactactg-caaaaatgttttcaaagtggctgttctattttcacttcaaacagcagtgtatgagagttccaactgaactcgcattctttctaatacttggtgttgtcagtttttatactttttacctcttaatttaggttac------------ctgtggctataatttgca----ttgagggatgtcgacgttgaccatcattttgtgtgcttttcacatgcttcttatacgttattttgtgtagtttctgttcaga-----tattttactc---------actttaaaaattgc
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28516945 692 -  71996105 ttttgttttgta----------gttaactctccgcttttagtcataggctgaggcag-cattaattttctctaaatgtacttggttttt-ccatttttagaatttcaaataattgcaatcatgcagtatgtaatctttgggtatggcttgtttcatttagtgtgatgttttt-----gacatttattatgttgctacatgtatcagttac-tttttcctttttattgcttgttagagctccattatatgaatatgctacaatttatccatttatctg-tgatggac-tttcggagtatttaaaatttttggctattatgaataatgctgctatgaaaatttgtatgcaagtgtttgtgtggatgcatgttttcacttaatttgggtaaataccttttatttgtacctctccagga-----------ggaccacatgctttgtgtatattatct-ttatgaactactg-caaaaatgttttcaaagtggctgttctattttcacttcaaacagcagtgtatgagagttccaactgaactcacattctttctaatacttggtgttgtcagtttttatactttttacctcttaagttaggttac------------ctgtggctataatttgca----ttgagggatgtcgacgttgactatcattttgtgtgcttttcacatgcttcttatacgttattttgtgtagtttctgttcaaa-----tattttactc---------actttaaaaattgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2230116 692 +   2316924 ttttgtcttgta----------gtcagctctccccttttagtcataggctgaggcag-cattaattttctctaaacgtacttggttttt-ccatttttagaatttcaaataattgcaatcatgcagtatgtaatctttgggtatggcttgtttcatttagtgtgatgttttt-----gacatttattatgttgctacatgtatcagttac-tttttcctttttattgcttgttagaactccattgtatgaatatgctacaatttatccatttatctg-tgatgggc-tttgggagtatttaaaatttttggctattatgaataatactgttatgaaaatttgtatgcaagtgtttgtgtggatgcatgttttcacttaatttgggtaaataccttttatttatacttctccagga-----------ggaccacatgcttagtgtatattatct-ttatgaaatactg-caaaaatgttttcaaagtggctgttctattttcacttcaaacagcagtgtatgagagttccaactgaactcacattctttctaatacttggtgttgtcagtttttatacttttcacctctcaagttaggttac------------ctgtggctataatttgca----ttgaggaatgtcgacgttgaccatcattttgtgtgcttttcacatgcttcttatacgttatttcgtgtagtttctgttcaaa-----tattttgctc---------actttaaaaattgc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2095859 692 -   3067355 tttttttttgta----------gtcaactctccccttttagtcatagcctgaggcag-cattaattttctctaaatgtacttggctttt-ccatttttagaatttgaaataattgcaatcatgcagtatgtaatctttgggtgtggcttgtttcctttagcatgatgttttt-----gacatttattatgttgctacgtgtattagttac-tttttcctttttattgcttgttagaactccattgtatgaacatgctaaaatttatccatttatctg-tgatgggc-ttcgggagtatttaaaatttttggctattatgaataatgctgctatgaaaatttgtatgaaagtgtttgtgtggacgcatgctttcacttaatttgggtaaataccttttatttgtacctctccagga-----------ggaccacatgcttagtgtatattatct-ttatgagatactg-caaacatgttttcaaagtggctgttctattttcacttcagacagcagtgtatgagagttccaaatgaactcacattctttctaatacttggtgttgtcagtttttatacttttcacctctcaagttaggttac------------ctgtagctataatttgca----ttgaggaatgtcgacgttgaccatcattttgtgtgcttttcacatgcttcttatacattattttgtgtagtttctgttcaaa-----tattttactc---------actttaaaaattgc
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742            525538 694 +   2232465 tgttcttttgca----------atcaattct--gtttccactcatagcctcaggcaaccattgatttactgttagggta-----gtttc-tcgtttatagaatttcatataattgcaatgacagagtttgtaatctctgggtctggcttcttttcctaa-----agtctttt-----gcaatttattatgttactgcatgtattcattacaactttcttctttattgctggttaaaattccattgtatgaatatgctgtaatttgtccacttatctg-tgttgttcttttgggtatatttacagttttagattattatgaatagtcctgctatgaaaatttgtatacaagtgtttatgtggatgggtgtttt-----aacttgagtaaatgcttacgaataggatt------gag-----------gaatcatatacttaatatatgtttactattgtgagtgactaccaaaaatgttttcaacgtggctgtt-gattttcacttcaaacagcagtgcataagagtttgca-tcaccccccattctctctaatacttgatattgtcga---ttgtacttttagcctctcaagtgggattatacttatatttcattctggctataatttgca----ttaaggactattgatgttgatt-tttctttgtgagctttttatgtacttcctaaatcttagtagtagtagtttctgttcaaacacattattttaccctttattattatttttttaattgg
i otoGar3.GL873742         C 0 I 294
s dasNov3.JH570037            302033 707 -    859332 TTTCATcttgtgtccctttattgtcaattctctccctcgaccagtaacatcagacaaccattaattcactgtcattata-----gttat-gcttttctagaatttcatgtaaatgcagttatacagtgtgtaaattttgaatctcacttctttcaccttgcatggcttttttctttggaaatttatgatgtcattgtatgtatca-tagc-tcattcatttttactgttgattaaaattccactgtatcaatatatcacaatttatccatttacctgatggtggacttttagggatactttgatattttggctattataaatattgctgctttgaaaattagtatgcaagtacttatgtgggcaggaattttcatttaatttgggtaaata-----------------tgcaggaatgcgagtgatatatcataagctaattatgc-ttatct-ttataagaaactg-ctaatatgttttcaaagtggctgtgctttttgcattccgaacagcagtgta-gagagtttcaattg-ccccacattcttcctaacacttagtgttgttgatctttatacttttactcctttgagtatgtttctgcttatgtcttactgtgcttttaatttgcattccttaatacttggtgattttgaccatcttttcatgtgtttttcatgtgcttcatatgtcatagtttgtgaatttact-ctgaaa-----tatgttgcct---------actttt---attgg
i dasNov3.JH570037         I 275 C 0
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171589458 4909 - 171630274 T
e cerAty1.NW_012002711v1        7347 2545 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=373775.000000
s hg38.chr6_GL000254v2_alt    371089 73 +   4827813 gtcatttgtcttcttattgttgaatttgaag---ttctttgtat--actctgaactcaagtccttggtcaaacaaatc
s panTro5.chr6              29345696 73 + 175400573 gtcatttgtcttcttattgttgaatttgaag---ttctttgtat--attctgaactcaagtccttggtcaaacaaatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29591447 73 + 173848474 gtcatttgtcttcttattgttgaatttgaag---ttctttgtat--attctgaactcaagtccttggtcaaacaaatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5389089 73 +   6154872 gtcatttgtcttcttattgttgaatttgaag---ttctttgtat--attctgaactcaagtccttggtcaaacaaatc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29553103 73 + 172585720 ctcatttgtcttcttattgttgaatttgaag---ttcttcgtat--attctgaactcaagTCCTTGGTCAAACAAATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29214247 73 - 170955103 atcatttgtcttcttattgttgaatttgaag---ttcttcgtat--attctgaactcaagTCCTTGGTCAAACAAATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2222234 73 -   2996164 atcatttgtcttcttattgttgaatttgaag---ttcttcgtat--attctgaactcaagtccttggtcaaacagatC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28517637 73 -  71996105 atcatttgtcttcttattgttgaatttgaag---ttcttcgtat--attctgaactcaagTCCTTGGTCAAACAAATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2230808 73 +   2316924 atcatttgtcttcttattgttgaatttgaag---ttcttcgtat--attctgaactcaagtccttggtcaaacaaatc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2096551 73 -   3067355 atcatttgtcttcttattgttgaatttgaag---ttcttcgtat--attctgaactcaagtccttggtcaaacaaatc
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742            526526 72 +   2232465 gtcttttgtcttc---ttgttgagttttaag---tattttgtatgcattatggactcaagtccttggtcaaataaatg
i otoGar3.GL873742         I 294 I 31
s dasNov3.JH570037            302740 76 -    859332 gtcatctgccttctcataattgagtgttaggtgttattttatat--gtcctggactcaagttcttggtcagataaatg
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171589458 4909 - 171630274 T
e cerAty1.NW_012002711v1        7347 2545 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=478594.000000
s hg38.chr6_GL000254v2_alt    371162 257 +   4827813 -------ttttgcaaat-------aGAATACTGTC-----------ATATCTTTCAAAGAGAAAAATTTTAACTTTAAtaaaatacagtgtgtcatttccac-------agaaaaag---cctggtggcattttgattggggattgcattgaatttatagaccaattggagaagaactggcaacttgacaacattgacttttctgatctggggacatgatatagatctccatttacttacatcttattttctttcagaagcatttgagg-------ttttcattgtatagctattgtcc
s panTro5.chr6              29345769 257 + 175400573 -------ttttgcaaat-------aGAGTACTGTC-----------ATATCTTTCAAAGAGAAAAATTTTAACTTTAAtaaaatacagtgtgtcatttccac-------agaaaaag---cctggtggcattttgattggggattgcattgaatttatagaccaattggagaagaactggcaacttgacaacattgacttttctgacctggggacatgatatagatctccatttacttacatcttattttctttcagaagcatttgagg-------ttttcattgtatagctattgtcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29591520 257 + 173848474 -------ttttgcaaat-------aGAGTACTGTC-----------ATATCTTTCAAAGAGAAAAATTTTAACTTTAAtaaaatacagtgtgtcatttccac-------agaaaaag---cctggtggcattttgattggggattgcattgaatttatagaccaattggagaagaactggcaacttgacaacattgacttttctgacctggggacatgatatagatctccatttacttacatcttattttctttcagaagcatttgagg-------ttttcattgtatagctattgtcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5389162 256 +   6154872 -------ttttgcaaat-------aGAGTACTGTC-----------ATATCTTTCAAAGAGAAAAATTTTAACTTTAAtaaaatacagtgtgtcatttccac-------agaaaaag---cctggtggcattttgattggggattgcattgaatttatagaccaattggagaagaactggcaacttgacaacattgacttttctgatctgggg-catgatatagatctccatttacttacatcttattttctttcagaagcatttgagg-------ttttcattgtttagctattgtcc
i gorGor5.CYUI01015250v1   C 0 C 0
s manLeu1.NW_012104165v1     2230881 257 +   2316924 -------ttttgcaaat-------aAAGTACTGTC-----------ATATCTTTCAAAGAGAAAATTTTTAACTTCAGtaaaatacagtgtgtcatttccac-------aaaaaaag---cctggtggtattttgattggggattgcactgaatttacagaccaattggagaagaactggcaacttgacaacattgagttttctgatctgggaacatggtatagatctccatttacttacatcttactttctttcagaagcatttgagg-------ttttcattgtatagatattgtcc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2096624 257 -   3067355 -------ttttgcaaat-------aAAGTACTGTC-----------ATATCTTTCAAAGAGAAAATTTTTAACTTCAAtaaaatacagtgtgtcatttccac-------aaaaaaag---cctggtggtattttgattggggattgcactgaatttatagaccaattggagaagaactggcaacttgacaacattgacttttctgatctgggaacatggtattgatctccatttacttacatcttattttctttcagaagcatttgagg-------ttttcattgtataaatatcgttc
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742            526629 260 +   2232465 -------ttttattgtt-------aaaatactgca-----------gtatctttcaaagagcaaatttataactttaatgagatacaacgtgtcatttccacacatacaaaaaaagg---cctggtgtcattttgatt-aggattgccctgaatttgtagatcaatttg---agaactatcaacttggcagcactgactgttctggtccaggggcatgatacatgtctccatttatttacatctttttttctcttggaagcatttaaac-------tttttattgtgcagataaaatcc
i otoGar3.GL873742         I 31 n 31
s dasNov3.JH570037            302816 287 -    859332 tttcatgtttttcacctcatctggaacatgccttttgctttattaagtgccttacattaagcaaatttttaactttaatgaaaaacaatatatTGtttctac-------aaaaaaagggacttgctaggattttgatt-gggattgcactgaatttacagaccaacctggaaagaacggacatcttggcaatattgaatcttttgattcaggaacatggtgcatatctccacttatttacatcttAATTTACATCAGATGTGTTCCAAGGTGAATATCttcatt-tatttatatct---
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171589458 4909 - 171630274 T
e chlSab2.chr17             28517710   0 -  71996105 C
e cerAty1.NW_012002711v1        7347 2545 +    766320 I
e macNem1.NW_012011356v1     2222307   0 -   2996164 C
e macFas5.chr4              29214320   0 - 170955103 C
e rheMac8.chr4              29553176   0 + 172585720 C
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=116311.000000
s hg38.chr6_GL000254v2_alt    371419  95 +   4827813 atattttgttaaagtcacctctatgtatttcatgtttttagataccactataaattgtatAGAAATATGACTGATTTTTTTCCATCGTCT----------GTttt
s panTro5.chr6              29346026  95 + 175400573 atattttgttaaagtcacctctatgtatttcatgtttttagataccactataaattgtatAGAAATATAACTGATTTTTTTCCATCGTCT----------GTttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29591777  95 + 173848474 atattttgttaaagtcaccgctatgtatttcatgtttttagataccactataaattgtatAGAAATATAACTGATTTTTTTCCATCGTCT----------GTttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5389418  93 +   6154872 atattttgttaaagtcacctctatgtatttcatgtttttagataccactataaattgtatAGAAATATGACTGA--TTTTTCCATCGTGT----------GTttt
i gorGor5.CYUI01015250v1   C 0 C 0
s manLeu1.NW_012104165v1     2231138 105 +   2316924 atattttgttaaagtcatctctacatatttcatgtttttggataccactataaattgtatAGAAATATGACTGATCTTTTTCCATTGTGTATTTTATTTCATttt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2096881  95 -   3067355 atattttgttaaagtcatctctacatatttcatgtttttggataccactataaattgtatAGAAATATGACTGATTTTTTTCCATTGTGT----------GTttt
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            303103  80 -    859332 -tcatttattta---tatcttaatttatctCA------GAAGTATTCCT-TAAAAAGGGGAGAAA----ACACATTATTCTCCATCTTTT----------CTTTT
i dasNov3.JH570037         C 0 I 518
e canFam3.chr35             26138836 1270 +  26524999 T
e otoGar3.GL873742            526889  31 +   2232465 I
e calJac3.chr4             171589458 4909 - 171630274 T
e chlSab2.chr17             28517710   0 -  71996105 C
e cerAty1.NW_012002711v1        7347 2545 +    766320 I
e macNem1.NW_012011356v1     2222307   0 -   2996164 C
e macFas5.chr4              29214320   0 - 170955103 C
e rheMac8.chr4              29553176   0 + 172585720 C
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=27975.000000
s hg38.chr6_GL000254v2_alt    371514 24 +   4827813 attttattttattattatttaagt
s panTro5.chr6              29346121 24 + 175400573 attttattttattattatttaagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29591872 24 + 173848474 attttattttattattatttaagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5389511 24 +   6154872 gttttattttattattatttaagt
i gorGor5.CYUI01015250v1   C 0 C 0
s manLeu1.NW_012104165v1     2231243 24 +   2316924 attttattttattatactttaagt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2096976 24 -   3067355 attttattttattatactttaagt
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            303183 518 -    859332 I
e canFam3.chr35             26138836 1270 +  26524999 T
e otoGar3.GL873742            526889 31 +   2232465 I
e calJac3.chr4             171589458 4909 - 171630274 T
e chlSab2.chr17             28517710  0 -  71996105 C
e cerAty1.NW_012002711v1        7347 2545 +    766320 I
e macNem1.NW_012011356v1     2222307  0 -   2996164 C
e macFas5.chr4              29214320  0 - 170955103 C
e rheMac8.chr4              29553176  0 + 172585720 C
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1332614.000000
s hg38.chr6_GL000254v2_alt    371538 349 +   4827813 tctagggtacatgtgcacaacgtgcaggtttgttacgtaggtatacatgtgccatgttggtttgctgcatccatcaattaatcatttacattaggtatttctcctaatgctatccctcccgcat-cccccccaccgcccccacaggccctggtgtatgatgtttcc--ccccaggtccaactgttctcattgttcaatgcccacctatgcgtgagaacatgtggtgtttggttttctgttcttgtgatagtttgctgagaatgatggcttccagcttcatccatgtccctgcaaaggacatgaacacatccttttcgatggctgcatagtactccatgttgtatatgtgaat
s panTro5.chr6              29346145 349 + 175400573 tctagggtacatgtgcacaacgtgcaggtttgttacgtaggtatacatgtgccatgttggtttgctgcacccatcaattagtcatttacattaggtatttctcctaatgctatccctcccgcat-cccccccactgcccccacaggccctggtgtatgatgtttcc--ccccaggtccaactattctcattgttcaatgcccacctatgcgtgagaacatgtggtgtttggttttctgttcttgtgatagtttgctgagaatgatggcttccagcttcatccatgtccctgcaaaggacatgaacacatccttttcgatggctgcatagtattccatgttgtatatgtgaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29591896 349 + 173848474 tctagggtacatgtgcacaacgtgcaggtttgttacgtaggtatacatgtgccatgttggtttgctgcacccatcaattagtcatttacgttaggtatttctcctaatgctatccctcccgcat-cccccccaccgcccccacaggccctggtgtatgatgtttcc--ccccaggtccaactattctcattgttcaatgcccacctatgcgtgagaacatgtggtgtttggttttctgttcttgtgatagtttgctgagaatgatggcttccagcttcatccatgtccctgcaaaggacatgaacacatccttttcgatggctgcatagtattccatgttgtatatgtgaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5389535 350 +   6154872 tctagggtacatgtgcacaacgtgcaggtttgttacgtaggtatacatgtgccatgttggtttgctgcacccatcaattagtcatttacattaggtatttctcctaatgctatccctcccgcatccccccccaccgcccccacaggccctggtgtgtgatgtttcc--ccccaggtccaactattctcattgttcaatgcccacctatgcgtgagaacatgtggtgtttggttttctgttcttgtgatagtttgctgagaatgatggcttccagcttcatccatgtccctgcaaaggacatgaacacatccttttcgatggctgcatagtattccatgttgtgtatgtgaat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29553176 349 + 172585720 tctagggtacatgtgcacaatgtgcaggtttgttacgtaggtatacatgtgccatgttggtttgctgcacccatcaactcgtcatttacattaggtatttctcctaatgctatccctcccacat-ccaccc--ctgccctcacaggccccagtgtgtgatgttcccagccctgtgtccaagtgttctcattgttcaattcccacctatgagtgagaacatgtggtgtttgtttttctgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcatccttttctatggctgcatagtattccatggtgtatatgtgaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29214320 349 - 170955103 tctagggtacatgtgcacaatgtgcaggtttgttacgtaggtatacatgggccatgttggtttgctgcacccatcaactcgtcatttacattaggtatttctcctaatgctatccctcccacat-ccaccc--ctgccctcacaggccccagtgtgtgatgttcccagccctgtgtccaagtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttgtttttctgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcatccttttctatggctgcatagtattccatggtgtatatgtgaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2222307 349 -   2996164 tctagggtacatgtgcacaatgtgcaggtttgttacgtaggtatacatgtgccatgttggtttgctgcacccatcaactcgtcatttacattaggtatttctcctaatgctatccctcccacat-ccaccc--ctgccctcacaggccccagtgtgtgatgttcccagccctgtgtccaagtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttgtttttctgtccttgcgatagtttgctgagaatgatggtttccagcttcatccacgtccctgcaaaggacatgaactcatccttttctatggctgcatagtattccatggtgtatatgtgaat
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28517710 349 -  71996105 tctagggtacatgtgcacaatgtgcaggtttgttacgtaggtatacatgtgccatgttggtttgctgcacccatcaactcgtcatttacattgggtatttctcctaatgctatccctcccacat-ccaccc--ccgccctcacaggccccagtgtgtgatgttcccagccctgtgtccaagtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttgtttttctgtccttgcgatagtttgctgagaatgatggtttccagcttcatcgatgtccctgcaaaggacatgaactcatccttttctatggttgcatagtattccatggtgtatatgtgaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2231267 349 +   2316924 tctagggtacatgtgcacaacgtgcaggtttgttacgtaggtatacatgtgccatgttggtttgctgcactcatcaactcgtcatttacattaggtatttctcctaatgctatccctcccacat-ccatcc--ccgacctcacagaccccagtgtgtgatgttcccagccctgtgtccaagtgttctcattgttcaattcctacctataagtgagaacatgcggtgtttgtttttctgtccttgtgacagtttgctgagaatgatggtttccagcttcatctatgtccctgcaaaggacatgaactcatccttttctatggctgcatagtattccatggtgtatatgtgaat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2097000 349 -   3067355 tctagggtacatgtgcacaacgtgcaggtttgttacgtgggtatacatgtgccatgttggtttgctgcacccatcaacttgtaatttacattaggtatttctcctaatgctatccctcccacat-ccactc--ccgccctcacaggccccagtgtatgatgttcccagccctgtgtccaagtgttctcattgttcaattcctacctatgagtgagaacatgcggtgtttgtttttctgtccttgtgatagtttgctgagaatgatggtttccaacttcatccatgtccctgcaaaggatgtgaactcatccttttctatggctgcatagtattccatggtgtatatgtgaat
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            303183 518 -    859332 I
e canFam3.chr35             26138836 1270 +  26524999 T
e otoGar3.GL873742            526889  31 +   2232465 I
e calJac3.chr4             171589458 4909 - 171630274 T
e cerAty1.NW_012002711v1        7347 2545 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1383078.000000
s hg38.chr6_GL000254v2_alt    371887 287 +   4827813 tttctAGGCCTTAACTCCAACTGAGCTTC---------------CCATCTACAATGCTTTAATAGTTTGTGATCTACTCTAATTCACATTC-----------CTCCCATACAAAGCACTCAAATTAACAGAAGCTCAACAGAGATCATTTAGTGTCTTTTATTCCTTTTGATTCCTC--------------------------------------AGATGTGACTTTCAATGTGTTTTATTTATCTGAGTGTGTAT------TGTAGAGA---------------------------AAAAAGT----TGAGGGTTG-------------------------------------------------------------------CTTCCTTAGAAATACTTTGCTGTAATTAAATCATGTTATGCCAGCTGTATTT-TCACAAGTTACTAACATCA
s panTro5.chr6              29346494 287 + 175400573 tttctAGGCCTCAACTCCAACTGAGCTTC---------------CCATCTACAATGCTTTAATAGTTTGTGATCTACTCTAATTCACATTC-----------CTCCCATACAAAGCACTCAAATTAACAGAAGCTCAACAGAGATCATTTAGTGTCTTTTATTCCTTTTGATTCCTC--------------------------------------AGATGTGACTTTCAATGTGTTTTATTTATCTGAGTGTGTAT------TGTAGAGA---------------------------AAAAAGT----TGAGGGTTG-------------------------------------------------------------------CTTCCTTAGAAATACTTTGCTGTAATTAAATCATGTTATGCCAGCTGTATTT-TCACAAGTTACTAACATCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29592245 287 + 173848474 tttctAGGCCTCAACTCCAACTGAGCTTC---------------CCATCTACAATGCTTTAATAGTTTGTGATCTACTCTAATTCACATTC-----------CTCCCACACAAAGCACTCAAATTAACAGAAGCTCAACAGAGATCATTTAGTGTCTTTTATTCCTTTTGATTCCTC--------------------------------------AGATGTGACTTTCAATGTGTTTTATTTATCTGAGTGTGTAT------TGTAGAGA---------------------------AAAAAGT----TGAGGGTTG-------------------------------------------------------------------CTTCCTTAGAAATACTTTGCTGTAATTAAATCATGTTATGCCAGCTGTATTT-TCACAAGTTACTAACATCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5389885 287 +   6154872 tttctAGGCCTCAACTCCAACTGAGCTTC---------------CCATCTACGATGCTTTAATAGTGTGTGATCTACTCTAATTCACATTC-----------CTCCCATACAAAGCACTCAAATTAACAGAAGCTCAACAGAGATCATTTAGTGTCTTTTATTCCTTTTGATTCCTC--------------------------------------AGATGTGACTTTCAATGTGTTTTATTTATCTGAGTGTGTAT------TGTAGAGA---------------------------AAAAAGT----TGAGGGTTG-------------------------------------------------------------------CTTCCTTAGAAATACTTTGCTGTAATTAAATCATGTTATGCCAGCTGTATTT-TCACAAGTTACTAACATCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29553525 287 + 172585720 tttctAGACCTCAACTCCGACTGAGCTTC---------------CTATCTATAATGCTTTAATAGTTTGTGATCTACTCTAATTCACATTC-----------CTCCCATACAAAGCACTCGAATTAAAAGAAGCTCAGCAGAGATCATTTACTATAATTTATTCCTTTTGATTCCTC--------------------------------------AGATGTGACTTTCACTGTGTTTTATTTATCTGAGTGTGTAT------TGCAGAGA---------------------------AAAAAGT----TGAGAGTTA-------------------------------------------------------------------CTGCCTTAGAAATACTTTGCTGTAATTAAATCATGTTATGCCATCTGTATTT-TCACAAGTTACTAACATCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29214669 287 - 170955103 tttctAGACCTCAACTCCGACTGAGCTTC---------------CTATCTATAATGCTTTAATAGTTTGTGATCTACTCTAATTCACATTC-----------CTCCCATACAAAGCACTCGAATTAAAAGAAGCTCAGCAGAGATCATTTACTATAATTTATTCCTTTTGATTCCTC--------------------------------------AGATGTGACTTTCACTGTGTTTTATTTATCTGAGTGTGTAT------TGCAGAGA---------------------------AAAAAGT----TGAGAGTTA-------------------------------------------------------------------CTGCCTTAGAAATACTTTGCTGTAATTAAATCATGTTATGCCATCTGTATTT-TCACAAGTTACTAACATCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2222656 287 -   2996164 tttctAGACCTCAACTCCGACTGAGCTTC---------------CTATCTATAATGCTTTAATAGTTTGTGATCTACTCTAATTCACATTC-----------CTCCCATACAAAGCACTCGAATTAAAAGAAGCTCAGCAGAGATCATTTACTATAATTTATTCTTTTTGATTCCTC--------------------------------------AGATGTGACTTTCACTGTGTTTTATTTATCTGAGTGTGTAT------TGCAGAGA---------------------------AAAAAGT----TGAGAGTTA-------------------------------------------------------------------CTGCCTTAGAAATACTTTGCTGTAATTAAATCATGTTATGCCATCTGTATTT-TCACAAGTTACTAACATCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1        9892 285 +    766320 TTTCTAGACCTCAACTCCAGCTGAGCTTC---------------C-ATCCATAATGCTTTAATAGTTTTTGATCTACTCTAATTCACATTC-----------CTCCCAAACAAAGCACTCAAATTAACAGAAGCTT-GAAGAGATCAGTTAGTGTCATTTATTCCTTTTGATTCTTC--------------------------------------AGATGTGACTTTCAGTGTGTTTTATTTATCTTAGTGTGTAT------TGTAGGGA---------------------------AAAATGT----TGAGGGCTG-------------------------------------------------------------------CTGCCTTAGAAATACTTTGCTGTAATTAAATCATGTCATGCTGTCTGTATTT-TCACAAGTTACTAACATCT
i cerAty1.NW_012002711v1   I 2545 C 0
s chlSab2.chr17             28518059 287 -  71996105 tttctAGACCTCAACTCCGACTGAGCTTC---------------CCATCTACAATGCTTTAATAGTTTGTGATCTACTCTAATTCACATTC-----------CTCCCATACAAAGCACTCGAATTAAAAGAAGCTCAGCAGAGATCATTTACTATAATTTATTCCTTTTGATTCCTC--------------------------------------AGATGTGACTTTCACTGTGTTTTATTTATCTGAGTGTGTAT------TGCAGAGA---------------------------AAAAAGT----TGAGAGTTA-------------------------------------------------------------------CTGCCTTAGAAATACTTTGCTGTAATTAAATCATGTTATGCCATCTGTATTT-TCACAAGTTACTAACATCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2231616 287 +   2316924 tttctAGACCTCAACTCCGACTGAGCTTC---------------CCATCTACAATGCTTTAATAGTTTGTTATCTACTCTAATTCACATTC-----------CTCCCATACAAAGCACTCGAATTAAAAAAAGCTCAGCAGAGATCACTTAGTATCATTTATTCCTTTTGATTCCTC--------------------------------------AGATGTGACTTTCAGTGTGTTTTATTTATCTGAGTGTGTAT------TGTAGGGA---------------------------AAAAAGT----TGAGAGTTA-------------------------------------------------------------------CTGCCTTAGAAATACTTTGCTGTAATTAAATCATGCTATGCCATCTCTATTT-TCACAAGTTACTAACATCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2097349 283 -   3067355 tttctAGACCTCAACTCCAACTGAGCTTC---------------CCATCTACAATGCTTTAATAGTTTGTGATCTACACTAATTCACATTC-----------CTCCCATACAAAGCACTCGAATTAAAAGAAGCTCAGCAG-GATCATTTAGTATCATTTATTCCTTTTG---CCTC--------------------------------------AGATGTGACTTTCAGTGTGTTTTATTGATCTGAGTGTGTAT------TGTAGAGA---------------------------AAAAAGT----TGAGAGTTG-------------------------------------------------------------------CTGCCTTAGAAATACTTTGCTGTAATTAAATCATGTTATGCCATCTGTATTT-TCACAAGTTACTAACATCA
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            303701 452 -    859332 TTTCCAGAACTCAGCTCAAGCAGAAGCTCTATTCATGAGAAGCTCTATTCATGATGCTTTAATAGCTTATCATCTCCTCTATTTTACTTTTATCTCAAAAAAATCTCAAACAAAACACTCCATCTACGGGAAGCCT-ACAGAGGTCCATTACTGTCATGTGCCTCTTTTGAGCCCTCTGAACTTATTTCTTATGGTCTAGATAACATTACAATTAAGATGT--TTTGCATTG-GTTTTATGTCTCTGAGGGTGAATATGGACTCTGAAAATTACAAGTCAGAGTCCATATGTCTTCTAAAAAGTACCCTGAGAGTTATGTATTTTCAGTGTATTTCATCTCTCAAGCATGTTGGAGATGAGGGTGCAGTGGGAGCCAAGGCCTTCTACTTTAGAAATATTTTGCTGTGATGATATCATGTTATACCATCCATGTTTACCCCAAGTGGTCAAAGTCA
i dasNov3.JH570037         I 518 T 8489
e canFam3.chr35             26138836 1270 +  26524999 T
e otoGar3.GL873742            526889  31 +   2232465 I
e calJac3.chr4             171589458 4909 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=3812355.000000
s hg38.chr6_GL000254v2_alt    372174 828 +   4827813 CACCTAAAAATGTTAACATTTGCTGGCACCCAGTAGATTGGCAGGGGCCAAAAACTCTCCTACAATTCTAGTTACCAAAACATGAAAAATATTGGAGCTTGGTACAATCTCCTACAGACCAGGATATCAGACATTTCCTGGATTTTGATAACTGATTGAATTCTGCTAGTCCCCACAGGTTGTAGGATCACTGGTCAAATTCCTCTCCAATAAGATAGAGAAGTTTAGACATA----TGATTATATGACTATTTAATCATATTTATCTTAAAAATAATATTTAATATATTTTAAAGTAAActggaatgatatataccaagctcatggtagttg--tctctggatttagtgttgggtcagagagtgacagttgaaggggatatgaactttatctgtgatactttaTGTGCTAAAAATTCTGAAAATAAAAATGACAAAAGTTATGGTTGATGATTCTGAATGATGGGAACATAAGGGTTTATTTTTAATATTTTAAATATCTAAAATAAAGGATGAAGAAATAATATAGAATGACTTGTTAAAATATCACTTCAAATTAAAATTCACTATAATGGtaatagcagctaacatgtattgaatgattatgcactaggcatcaaggataatgtttacgtatttttcacatggagttttcacaacaatcAAGACTACTGAAGCCAAGACTGTTTTCAGTTGCTTCACATAAGTGGACAGGAAAATACCTGATCATGCTCTTAAAAGTACTGACTTTAAAATATAATTGTATTGTAAATGTGACTTGATTTTCATACCAAGACTTTGTCTGGTACACATGGAATATATCACCTAGACACAA
s panTro5.chr6              29346781 827 + 175400573 CACCTAAAAATGTTAACATTTGCTGGCACCCAGTAGATTGGCAGGGGCCAAAAACTCTCCTACAATTCTAGTTACCAAAACATGAAAAATATTGGAGCTTGGTACAATCTCCTACAGACCAGGATATCAGACATTTCCTGGATTTTGATAACTGATTGAATTCTGCTAGTCCCCACAGGTTGTAGGATCACTGGTCAAATTCCTCTCCAATAAGATAGAGAAGTTTAGACATA----TGATTATATGACTATTTAATCATATTTATCTTAAAAATAATATTTAATATTTTTTAAAGTAAActggaatgatatataccaagctcatggtagttg--tctctggatttagtgttgggtcagagagtgacagttgaaggggatatgaactttatctgtgatactttaTGTGCTAAAAATTCTGAAAATAAAAATGACAAAAGTTATGGTTGATGATTCTGAATGATGGGAACATAAGGGTTTATTTTTAATATTTTAAATATCTAAAATAAAGGATGAAGAAATAATATAGAATGCCTTGTTAAAATATCACTTCAAATTAAAATTCACTATAATGGtaatagcagctaacatgtattgaatgattatgcactaggcatcgaggataatgtttacgtatttttcacatggagttttcacaacaatcGAGACTACTGAAGCCAAGACCG-TTTCAGTTGCTTCACATAAGTGGACAGGAAAATACCTGATCATGCTCTTAAAAGTACTGACTTTAAAATATAATTGTATTGTAAATGTGACTTGATTTTCATACCAAGACTTTGTTTGGTACACATGGAATATATCACCTAGACACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29592532 827 + 173848474 CACCTAAAAATGTTAACATTTGCTGGCACCCAGTTGATTGGCAGGGGCCAAAAACTCTCCTACAATTCTAGTTACCAAAACATGAAAAATATTGGAGCTTGGTACAATCTCCTACAGACCAGGATATCAGACATTTCCTGGATTTTGATAACTGATTGAATTCTGCTAGTCCCCACAGGTTGTAGGATCACTGGTCAAATTCCTCTCCAATAAGATAGAGAAGTTTAGACATA----TGATTATATGACTATTTAATCATATTTATCTTAAAAATAATATTTAATATATTTTAAAGtaaactggaatgatatataccaagctcatggtagttg--tctctggatttagtgttgggtcagagagtgacagttgaaggggatatgaactgtatctgtgatactttatgtgctaaaaactctgaaaataaaaatgacagaagttatggttgatgattctgaatgatgggaacataagggtttattTTTAATATTTTAAATATCTAAAATAAAGGATGAAGAAATAATATAGAATGCCTTGTTAAAATATCACTTCAAATTAAAATTCACTATAATGGtaatagcagctaacatgtattgaatgattatgcactaggcatcgaggataatgtttacgtatttttcacatggagttttcacaacaatcGAGACTACTGAAGCCAAGACCG-TTTCAGTTGCTTCACATAAGTGGACAGGAAAATACCTGATCATGCTCTTAAAAGTACTGACTTTAAAATATAATTGTATTGTAAATGTGACTTGATTTTCATACCAAGACTTTGTTTGGTACACATGGAATATATCACCTAGACACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5390172 827 +   6154872 CACCTAAAAATGTTAACATTTGCTGGCACCCAGTAGATTGGCAGGGGCCAAAAACTCTCCTACAATTCTAGTTACCAAAACATGAAAAATATTGGAGCTTGGTACAATCTCCTACAGACCAGGATATCAGACATTTCCTGGATTTTGATAACTGATTGAATTCTGCTAGTCCCCACAGGTTGTAGGATCACTGGTCAAACTCCTCTCCAATAAGATAGAGAAGTTTAGACATA----TGATTATATGACTATTTAATCATATTTATCTTAAAAATAATATTTAATATATTTTAAAGTAAActggaatgatatataccaagctcatggtagttg--tctctggatttagtgttgggtcagagagtgacagttgaaggggatatgaactttatctgtgatactttaTGTGCTAAAAATTCTGAAAATAAAAATGACAAAAGTTATGGTTGATGATTCTGAATGATGGGAACATAAGGGTTTATTTTTAATATTTTAAATATCTAAAATAAAGGATGAAGAAATAATATAGAATGCCTTGTTAAAATATCAGTTCAAATTAAAATTCACTATAATGGTAATAGCAGCTAACATATATTGAATGATTATGCACTAGGCATCGAGGATAATGTTTACGTATTTTTCACATGGAGTTTTCACAGCAATCAAGACTACTGAAGCCAAGACCG-TTTTAGTTGCTTCACATAAGTGGACAGGAAAATACCTGATCATGCTCTTAAAAGTACTGACTTTAAAATATAATTGTATTGTAAATGTGACTTGATTTTCATACCAAGACTTTGTTTGGTACACATGGAATATATCACCTAGACACAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29553812 820 + 172585720 CACCTAAAAATGTTAACATTTGCTGGTACCCAGTAGATTGGCAGGGGCTAAAAACTCTCCTACAAGTCTAGTTACCAAAACATGAAAAATATTGGAGCTTGGTACAATCTCCTACAGACCAGGATATCAGACATTTCCTGAATTTTGATAACTGATTGAATTCTGCTAGTCCCCACAAGTTGTAGGATCACTGGTTAAATTCTTCTCCAATAAGACAGAGAAATTTAAGCATA----TGATTATATGACTATTTAATCATATTTATCTT--AAATAACATGTAATATATTTTAAAGTAAACTGGAGTGATATATACCAAGCTCATGGTAATTG--TCTCTGGATTTAGTGTTGTGTCAGAGAGTGACAGTTaaaggggatatgaactttatctgtgacactttatgtgctcaaaatgctgaaaa-aaaaatggcaaaatttatggttgatgattctgaatgatgggaatatagatgtttattTTTAATATTTTAGATATCTAAAATAAAGGATGAAAAAATAATGTAGAATGCCTTGTTAAAATATCAGTTCAAGTTAAAATTCACTCTAATGGtaatagcagctagcatgtattgaatgactatgcactaggcatagaggataatgtttacatatttttcatattgagtttttgcagcaatcAACACTACTGAAGCCAAGACCA-TTTCAGTTGCTTCACATAAGTGGACAGGAAAATACCTGATCATGCTCTTAAAATTACTGACTTTAAAACATAATTGTATTGTAAATGTGACTTGATTTTCATACCGAGACTTTGTTTGGTACACATG----GTATCACCTAGATGCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29214956 820 - 170955103 CACCTAAAAATGTTAACATTTGCTGGTACCCAGTAGATTGGCAGGGGCTAAAAACTCTCCTACAAGTCTAGTTACCAAAACATGAAAAATATTGGAGCTTGGTACAATCTCCTACAGACCAGGATATCAGACATTTCCTGAATTTTGATAACTGATTGAATTCTGCTAGTCCCCACAAGTTGTAGGATCACTGGTTAAATTCTTCTCCAATAAGACAGAGAAATTTAAGCATA----TGATTATATGACTATTTAATCATATTTATCTT--AAATAACATGTAATATATTTTAAAGtaaactggagtgatatataccaagctcatggtaattg--tctctggatttagtgttgtgtcagagagtgacagttaaaggggatatgaactttatctgtgacactttatgtgctcaaaatgctgaaaa-aaaaatggcaaaatttatggttgatgattctgaatgatgggaatatagatgtttattTTTAATATTTTAGATATCTAAAATAAAGGATGAAAAAATAATGTAGAATGCCTTGTTAAAATATCAGTTCAAGTTAAAATTCACTCTAATGGTAATAGCAGCTAGCATGTATTGAATGACTATGCACTAGGCATAGAGGATAATGTTTACATATTTTTCATATTGAGTTTTTGCAGCAATCAACACTACTGAAGCCAAGACCA-TTTCAGTTGCTTCACATAAGTGGACAGGAAAATACCTGATCATGCTCTTAAAATTACTGACTTTAAAACATAATTGTATTGTAAATGTGACTTGATTTTCATACCGAGACTTTGTTTGGTACACATG----GTATCACCTAGATGCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2222943 821 -   2996164 CACCTAAAAATGTTAACATTTGCTGGTACCCAGTAGATTGGCAGGGGCTAAAAACTCTCCTACAAGTCTAGTTACCAAAACATGAAAAATATTGGAGCTTGGTACAATCTCCTACAGACCAGGATATCAGACATTTCCTGAATTTTGATAACTGATTGAATTCTGCTAGTCCCCACAAGTTGTAGGATCACTGGTTAAATTCTTCTCCAATAAGACAGAGAAATTTAAGCATA----TGATTATATGACTATTTAATCATATTTATCTT--AAATAACATGTAATATATTTTAAAGtaaactggagtgatatataccaagctcatggtaattg--tctctggatttagtgttgtgtcagagagtgacagttaaaggggatatgaactttatctgtgacactttatgtgctcaaaatgctgaaaataaaaatggcaaaatttatggttgatgattctgaatgatgggaatatagatgtttattTTTAATATTTTAGATATCTAAAATAAAGGATGAAGAAATAATGTAGAATGCCTTGTTAAAATATCAGTTCAAGTTAAAATTCACTCTAATGGTAATAGCAGCTAGCATGTATTGAATGACTATGCACGAAGCATAGAGGATAATGTTTACATATTTTTCATATTGAGTTTTTGCAGCAATCAACACTACTGAAGCCAAGACCA-TTTCAGTTGCTTCACATAAGTGGACAGGAAAATACCTGATCATGCTCTTAAAATTACTGACTTTAAAACATAATTGTATTGTAAATGTGACTTGATTTTCATACCGAGACTTTGTTTGGTACACATG----GTATCACCTAGATGCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       10177 818 +    766320 CACCTAAAAACGTTAACATTTGCTGGTACCCAGTAGATTGGCCTG-------AACTCTCCTACAAGTCTAGTTACCAAAGCATGAAAAATATTGGAGCTTGGTACAATCTCCTATGGACCAGAATATCAGACGTTTCCTAGATTTTGATAACTGAGTGAATTCTGCTAGTCCCCACAGGTTGTAGGATCACTGGTTAAATTCCTCTCCAATAAGACAGAGAAATTTAAACATATGATTGATTACATGACCATTTAATCAAATTTATCTGAAAAATTATATTTAATATATTTTAAAGTGAActggagtgatacataccaagctcatggtagttg--tctctggattcagtgttgggtcagagagtgatagttaaaggggatatgaactttatctgtgacactttaTGTGCTCAAAATGCTGA----AAAAATGACAAAAGTTATGGTTGATGATTCTGTGTGGTGGGAACATAGATGTTTATTTTTAATATTTTAAATATCTAAAA-GAATGATGAAGAAATAATGTAGAATAGTTTGTTAAAA-ATCAGTTCAAATTAAAATTTACTATAATAATAATAGCAGCTAACATGTATTGAATGATTATGCACTGGGAATCGAGGATGATGTTTACATATTTTTCATATTGAGTTTTCTCAACAGTCAAGACTACTGAAGCCAAGACCA-TTTCAGTTGCTTCAATTAAATAGACAGGAAAATACCTGATCATGCTCTTAAAATTACTAATTTTAAAATATAATTGTATTGTAAATGTGACTTGATTTTCATACCAAGACTTTGTTTGGTACACCTGGAAAGTATTAGCTAGACACAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28518346 822 -  71996105 CACCTAAAAATGTTAACATTTGCTGGTACCCAGTAGATTGGCAGGGGCTAAAAACTCTCCTACAAGTCTAGTTACCAAAACATGAAAAATAATGGAGCTTGGTACAATCTCCTACAGACCAGGATATCAGACATTTCCTGAATTTTGATAACTGATTGAATTCTGCTAGT-CCCACAAGTTGTAGGATCACTGGTTAAATTCTTCTCCAATAAGACAGAGAAATTTAAGCATA----TGATTATATGACTATTTAATCATATTTATCTT--AAATAACATGTAATATATTTTAAAGCAAACTGGAGTGATACATACCAAGCTCATGGTAATTGTCTCTCTGGATTCAGTGTTGTGTCAGAGAGTGACAGTTAAAGGGGATATGAACTTTATCTGTGACACTTTATGTGCTCAAAATGCTGAAAATAAAAATGGCAAAATTTATGGTTGATGATTCTGAATGATGGGAATATAGATGTTTATTTTTAATATTTTAGATATCTAAAATAAAGGATGAAGAAATAATGTAGAATGCCTTGTTAAAATATCAGTTCAAGTTAAAATTCACTATAATGGTAATAGCAGCTAGCATGTATTGAATGACTATGCACTAGGCATAGAGGATAATGTTTACATATTTTTCATATTGAGTTTTTGCAGCAATCAAGACTACTGAAGCCAAGACCA-TTTCAGCTGCTTCACATAAGTGGACAGGAAAATACCTGATCATGCTCTTAAAATTACTGACTTTAAAACATAATTGTATTGTAAATGTGACTTGATTTTCATACCGAGACTTTGTTTGGTACACATG----GTATCACTTAGATGCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2231903 820 +   2316924 CACCTAAAAATGTTAACATTTGCTGGCACCCAGTAGATTGGTAGGGGCTAAAAACTCTCCTACAA-TCTAGTTACCAAAACATGAAAAATATTGGAGCTTGGTACAATCTCCTACAGACCACGATATCAGACATTTCCTGAATTTTGATAACTGATTGAATTCTGCTAGTCCCCACAAGTTGTAGGATCACTGGTTAAATTCTTCTCCAATAAGACAGAGAAATTTAAGCATA----TGATTATATGACTATTTAATCATATTTATCTT--AAATAACATTTAACATATTTTAAAGTAAACTGGAGTGATATATACCAAGCTCATGGTAATTG--TCTCTGGATTTAGTGTTGTGTCAGAGAGTGACAGTTAAAGGGGATATGAACTTTATCTGTGACACTTTATGTGCTAAAAATGCTGAAAATAAAAATGACAAAAGTTATGGTTGGTGATTCTGAATGATGGGAATATAGATGTTTATTTTTAATATTTTAGATATCTAAAATAAAGGATGAAGAAATAATGTAGAATGCCTTGTTAAAATATCAGTTCAAGTTAAAATTCACTATAATGGTAATAGCAGCTAGCATGTATTGAATGACTATGCACTAGGCATAGAGGATAATGTTTACATATTTTTCATATTGAGTTTTTGCAGCAATCAAGACTACTGAAGCCAAGACCA-TTTCAGTTGCTTCATATAAGTGGACAGGAAAATACCTGATCATGCTCTTAAAATTACTGACTTTAAAACATAATTGTATTGTAAATGTGACTTGATTTTCATACCAAGACTTTGTTTGGTACACATG----GTATCACCTAGACGCAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2097632 822 -   3067355 CACCTAAAAATGTTAACATTTGCTGGCACCCAGTAGACTGGCAGGGGCTAAAAACTCTCCTACAAGTCTAGTTACCAAAACATGAAAAATATTGGAGCTTGGTACAATCTCCTACAGACCAGGATATCAGACATTTCCTGGATTTTGATAACTGATTGAATTCTGCTAGTCCCCACAGGTTGTAGGATCACTGGTTAAATTCTTGTCCAATAAGACAGAGAAATTTAAGCGTA----TGATTATATGACTACTTAATCATATTTATCTTAAAAACAACATTTAATATATTTTAAAGTAAACTGGAGTGATATATACCAAGCTCATGGTAGTTG--TCTCTGGATTTAGTGTTGTGTCAGAGAGTGACAGTTAAAGGGGTTATGAACTTTATCTGTGACACTTTATGTGCTAAAAATGCTGAAAATTAAAATGACAAAAGTTATGGTTGATGATTCTGAATGATGGGAATATAGGTGTTTATTTTTAATATTTTAAATATCTAAAATAAAGGATGAAGAAATAATGTAGAATGCCTTGTTAAAATATCAGTTCTAATTAAAATTCACTATAATGGTAATAGcaactaacatgtattgaacgactatgcactaggcatagaggataATGTTTGCATA-TTTTCATATTGAGTTTTTGCAGCAATCAAGACTACTGAAGCCAAGACCA-TTTCAGTTGCTTCACATAAGTGGATAGGAAAATACCTGATCATGCTCTTAAAATTACTGACTTTAAAACATAATTGTATTGTAAATGTGACTCAATTTTCATACCGAGACTTTGTTTGGTACACATG----GTATCACCTAGACGCAA
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            304153 8489 -    859332 T
e canFam3.chr35             26138836 1270 +  26524999 T
e otoGar3.GL873742            526889  31 +   2232465 I
e calJac3.chr4             171589458 4909 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=238285.000000
s hg38.chr6_GL000254v2_alt    373002 53 +   4827813 TGTAACAATTGAAAAATCTTCATTAGTTTATAAACTCACAATGTGC-TTTTTTT---
s panTro5.chr6              29347608 53 + 175400573 TGTAACAATTGAAAAATCTTCATTAGTTTATAAACTCACGATGTGC-TTTTTTT---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29593359 52 + 173848474 TGTAACAATTGAAAAATCTTCATTAGTTTATAAACTCACGATGTGC--TTTTTT---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5390999 52 +   6154872 TGTAACAACTGAAAAATCTTCATTAGTTTATAAACTCACGATGTGC--TTTTTT---
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29554632 53 + 172585720 TGTAACAATTGAAAAATCTTCATTAATTTATAAACTCATGATGCGC-TTTTTTT---
i rheMac8.chr4             C 0 I 4
s macFas5.chr4              29215776 52 - 170955103 TGTAACAATTGAAAAATCTTCATTAATTTATAAACTCATGATGTGC--TTTTTT---
i macFas5.chr4             C 0 I 4
s macNem1.NW_012011356v1     2223764 53 -   2996164 TGTAACAATTGAAAAATCTTCATTAATTTATAAACTCATGATGTGC-TTTTTTT---
i macNem1.NW_012011356v1   C 0 I 4
s cerAty1.NW_012002711v1       10995 53 +    766320 TGTAACAATTTAAAAATCTTTATTAATTTATAAACTCATGACATAC-TTTTTAA---
i cerAty1.NW_012002711v1   C 0 I 24
s chlSab2.chr17             28519168 53 -  71996105 TGTAACAATTAAAAAATCTTCATTAATTTATAAACTCATGATGTGC-TTTTTTT---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2232723 54 +   2316924 TGTAACAATTGAAAAATCTTCATTAATTTATAAACTCATGATGTGCTTTTTTTT---
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2098454 53 -   3067355 TGTAACAATTGAAAAATCTTCATTAATTTATAAACTCATGATGTGC-TTTTTTT---
i colAng1.NW_012115566v1   C 0 I 1
s otoGar3.GL873742           1712894 46 -   2232465 tgtctcaaaaaaaaaaaGTTCA----TTTATAAACTCATG-------TTTCTTTGCT
i otoGar3.GL873742         I 8679 C 0
e dasNov3.JH570037            304153 8489 -    859332 T
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171589458 4909 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=30262.000000
s hg38.chr6_GL000254v2_alt    373055 10 +   4827813 TTTAAACATG---------------------
s panTro5.chr6              29347661 10 + 175400573 TTTAAACATG---------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29593411 10 + 173848474 TTTAAACATG---------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5391051 10 +   6154872 TTTAAACATG---------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29554689 10 + 172585720 TTTAAACATG---------------------
i rheMac8.chr4             I 4 C 0
s macFas5.chr4              29215832 10 - 170955103 TTTAAACACG---------------------
i macFas5.chr4             I 4 C 0
s macNem1.NW_012011356v1     2223821 10 -   2996164 TTTAAACACG---------------------
i macNem1.NW_012011356v1   I 4 C 0
s chlSab2.chr17             28519221 10 -  71996105 TTAAAACACG---------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2232777 10 +   2316924 TTTAAACACG---------------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2098508 10 -   3067355 TTTAAACATG---------------------
i colAng1.NW_012115566v1   I 1 C 0
s otoGar3.GL873742           1712940 31 -   2232465 TTTAAACCAACAAGCAGATTAGTAGATTAGT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            304153 8489 -    859332 T
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171589458 4909 - 171630274 T
e cerAty1.NW_012002711v1       11048 24 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=2754019.000000
s hg38.chr6_GL000254v2_alt    373065 540 +   4827813 GGATGTAGGCTAGCTATCACAGCTAATTTAGCTTTTTTATATATTTCTGCAAAGCTTTTAACAAGACATCAAAAGAAATTATTGATAACAATATTTTGGAAATATTAAATAATTTTGTTAAAAGTTTTCTGAGTTTGGTAGTG-ACCTTCTGAGTATAGTTTGAATGGTCTTCAAAGGTAATTTTTAACACTTTTGCAGGGCTGAACTTGGCCTTGAATTTTAGAGATGTTAGACA----CAATTAAA-AATTCAAATTAATAAAACAAATATGTATAATGTAGTCATTATATTTCCTTTTAAAAAATGT-----------TTCATGCC---------------------------------TTTTCCCATTCCCAAATTAGACTAcctaacaagctatatctcaaatttggcctctagcatactgaagaattggggaagaggtttcaggtaactcaagataacccattcccttccctgcagatacagctcaaagtatttttctctgctatggctggaCTATAGATTCCTTGTCATCCTCGTACAACAATGTGGCATCATGCCAAGAACATCACTGAGAAACTGTTCTAA
s panTro5.chr6              29347671 540 + 175400573 GGATGTAGGCTAGCTATCACAGCTAATTTAACTTTTTTATATATTTCTGCAAAGCTTTTAACAAGACATCAAAAGAAATTATTGATAACAATATTTTGGAAATATTAAATAATTTTGTTAAAAGTTTTCTGAGTTTGGTAGTG-ACCTTCTGAGTATAGTTTGAATGGTCTTCAAAGGTAATTTTTAACACTTTTGCAGGGCTGAACTTGGCCTTGAATTTTAGAGATGTTAGACA----CAATTAAA-AATTCAAATTAATAAAACAAATATGTATAATGTAGTCATTATATTTCCTTTTAAAAAATGT-----------TTCATGCC---------------------------------TTTTCCCATTCCCAAATTAGACTAcctaacaagctatatctcaaatttggcctctagcatactgaagaattggggaagaggtttcaggtaactcaagataacccattcccttccctgcagatacagctcaaagcatttttctctgctatggctggaCTATAGATTCCTTGTCATCCTAGTACAACAATGTGGCATCATGCCAAGAACATCACTGAGAAACTGTTCTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29593421 540 + 173848474 GGATGTAGGCTAGCTATCACAGCTAATTTAACTTTTTTATATATTTCTGCAAAGCTTTTAACAAGACATCAAAAGAAATTATTGATAACAATATTTTGGAAATATTAAATAATTTTGTTAAAAGTTTTCTGAGTTTGGTAGTG-ACCTTCTGAGTATAGTTTGAATGGTCTTCAAAGGTAATTTTTAACACTTTTGCAGGGCTGAACTTGGCCTTGAATTTTAGAGATGTTAGACA----CAATTAAA-AATTCAAATTAATAAAACAAATATGTATAATGTAGTCATTATATTTCCTTTTAAAAAATGT-----------TTCATGCC---------------------------------TTTTCCCATTCCCAAATTAGACTAcctaacaagctataactcaaatttggcctctagcatactgaagaattggggaagaggtttcaggtaactcaagataacccattcccttccctgcagatacagctcaaagcatttttctctgctatggctggaCTATAGATTCCTTGTCATCCTAGTACAACAATGTGGCATCATGCCAAGAACATCACTGAGAAACTGTTCTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5391061 542 +   6154872 GGATGTAGGCTAGCTATCACAGCTAATTTAACTTTTTTATATATTTCAGCAAAGCTTTTAACAAGACATCAAAAGAAATTATTGATAACAATATTTTGGAAATATTAAATAATTTTGTTAAAAGTTTTCTGAGTTTGGTAGTGAACCTTCTGAGTATAGTTTGAATGGTCTTCAAAGGTAATTTTTAACACTTTTGCAGGGCTGAACTTGGCCTTGAATTTTAGAGATGTTAGACA----CAATTAAAGAATTCAAATTAATAAAACACATATGTATAATGTAGTCATTATATTTCCTTTTAAAAAATGT-----------TTCATGCC---------------------------------TTTTCCCATTCCCAAATTAGACTAcctaacaagctatatctcaaatttggcctctagcatactgaagaattggggaagaggtttcaggtaactcaagataacccattcccttccctgcagatacagctcaaagcatttttctctgctatggctggaCTATAGACTCCTTGTCATCTTAGTACAACAATGTGGCATCATGCCAAGAACATCACTGAGAAACTGTTCTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29554699 540 + 172585720 GGATGGAGA-TAGCTATCACAGCTAATTTAACTTTTTAATATATTTCAGCAAAGCTTTTAACAAGACATCAAAAGAAATTTTTGATAACAATATTTTGGAAATATTAAATAATTTTGTTAAAAGTTTTCTGAGTTTGGTAGTG-ACCTTCTGAGTATAGTTTGAATGGTCTTCAAAGGTAATTTTTAACACCTTTGCAGGGCTGAACTTGGCCTTGAATTTTAGAGATGTTAGACA----CAATTAAAGAATTCAAATTAATAAAACAAATATGTATAATGTAGTCTTTATATTTCCTTTTTAAAAATGT-----------TTCATGCC---------------------------------TTTTCCCATTCCCAAATTAGACTAcctgacaagctacatctcaaatttggcccctaccatactgaagaattggggaagaagtttcaggtaactcaagataacccattcctttccctgtaaatacagctcaaagcgtttttctcagtgatagttggactatagattccttgtcatcttagtACAACAATGTGGCATCATGCCAAGAGTATCACTGAGAAACTGTTCTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29215842 540 - 170955103 GGATGGAGA-TAGCTATCACAGCTAATTTAACTTTTTAATATATTTCAGCAAAGCTTTTAACAAGACATCAAAAGAAATTTTTGATAACAATATTTTGGAAATATTAAATAATTTTGTTAAAAGTTTTCTGAGTTTGGTAGTG-ACCTTCTGAGTATAGTTTGAATAGTCTTCAAAGGTAATTTTTAACACCTTTGCAGGGCTGAACTTGGCCTTGAATTTTAGAGATGTTAGACA----CAATTAAAGAATTCAAATTAATAAAACAAATATGTATAATGTAGTCTTTATATTTCCTTTTTAAAAATGT-----------TTCATGCC---------------------------------TTTTCCCATTCCCAAATTAGACTACCTGACAAGCTACATCTCAAATTTGGCCCCTACCATACTGAAGAATTGGGGAAGAAGTTTCAGGTAACTCAAGATAACCCATTCCTTTCCCTGTAAATACAGCTCAAAGTGTTTTTCTCAGTGATAGTTGGACTATAGATTCCTTGTCATCTTAGTACAACAATGTGGCATCATGCCAAGAGTATCACTGAGAAACTGTTCTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2223831 540 -   2996164 GGATGGAGA-TAGCTATCACAGCTAATTTAACTTTTTAATATATTTCAGCAAAGCTTTTAACAAGACATCAAAAGAAATTTTTGATAACAATATTTTGGAAATATTAAATAATTTTGTTAAAAGTTTTCTGAGTTTGGTAGTG-ACCTTCTGAGTATAGTTTGAATGGTCTTCAAAGGTAATTTTTAACACCTTTGCAGGGCTGAACTTGGCCTTGAATTTTAGAGATGTTAGACA----CAATTAAAGAATTCAAATTAATAAAACAAATATGTATAATGTAGTCTTTATATTTCCTTTTTAAAAATGT-----------TTCATGCC---------------------------------TTTTCCCATTCCCAAATTAGACTAcctgacaagctacatctcaaatttggcccctaccatactgaagaattggggaagaagtttcaggtaactcaagataacccattcctttccctgtaaatatagctcaaagcgtttttctcagtgatggttggaCTATAGATTCCTTGTCATCTTAGTACAACAATGTGGCATCATGCCAAGAGTATCACTGAGAAACTGTTCTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       11072 541 +    766320 GGATATAGACTAGCTATCAGAGAAAATTTAACTTTTTAAAATATTTCAGCAACGCTTTTGATAAGACATCAAGGGAAATTATTGATAACAATATTTTGGAAATATTAAACAATTTTGTTAAACGTTTTCTGAGTTTGGTAGTG-ATCTTCTGAGTATAGTTTGAATGGTCTTCAAAGGTAATTTTTAACACTTTTTCAGGGCTGAACTTGGCCTTGAATTTTAGAGATGTTAGACA----CAATTAAAGAATTCAAATTAATAAAACAAATATGTATAATGTAATCTTTATATTTTCTTTTTAAAAATGT-----------TTCATGCC---------------------------------TTCTCCCATTCCTCAATTAGACCACCTGACAAACTTTATCTCAAATTTGGCCCATAGCATactgaagaattgggggaaaagtttcaggtaactcaagataacccattcctttccctgaaaatatagctcaaagcatttttctcagtgatggttggactatagattccttgtcatcttagtataACAATGTGGCATCATGCCAAGAACATCGTTGAGAAACTGTTCTAA
i cerAty1.NW_012002711v1   I 24 C 0
s chlSab2.chr17             28519231 535 -  71996105 AGATGGAGA-TAGCTATCACAGCTAATTTAACTTTTTATTATATTTCAGCAAAGCTTTTAACAAGACATCAAAATAAATTTTTGATAACAATATTTTGGAAATATTAAATAATTTTGTTAAAAGTTTTCTGAGTTTGGTAGTG-ACCTTCTGAGTATAGTTTGAATGGTCTTCAAAGGTAATTTTTAACACCTTTGCAGGGCTGAACTTGGCCTTGAATTTTAGAAATGTTAGACA----CAATTAAAGAATTCAAATTAATAAAACAAATATGTATAATGTAGTATTTATATTTGCTTTTTAAAAATGT-----------TTCATGCC---------------------------------TTTCCCCATTCCCAAATTAGACTACCTGACAAGCTACATCTCAAATTTGGCCCCTACCATACTGAAGAATTGGGGAAGAAGTTTCAGGTAACTCAAA-----CCATTCCTTTCCCTGTAAATACAGCTCAAAGCGTTTTTCTCAGTGATGGTTGGACTATAGATTCCTTGTTATCTTAGTACAACAATGTGGCATCATGCCAAGAGCATCACTGAGAAACTGTTCTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2232787 540 +   2316924 GGATGGAGA-TAGCTATCACAGCTAATTTAACTTTTTAATATATTTCAGCAAAGCTTTTAACAAGACATCAAAAGAAATTTTTGATAACAATATTTTGGAAATATTAAATAATTTTGTTAAAAGTTTTCTGAGTTTGGTAGTG-ACCTTCTGAGTATAGTTTGAATGGTCTTCAAAGGTAATTTTTAACACCTTTGCAGGGCTGAACTTGGCCTTGAATTTTAGAGACGTTAGACA----CAATTAAAGAATTCAAATTAATAAAACAAATATGTATAATGTAGTCTTTATATTTGCTTTTTAAAAAGTT-----------TTCATGCC---------------------------------TTTTCCCATTCCCAAATTAGATTAcctgacaagctacatctcaaatttggcccctaccatactgaagaattggggaagaagtttcaggcaactcaagataacccattcctttccctgtaaatacagctcaaagcgtttttctcagtgatggttggaCTATAGATTCCTTGTCATCTTAGTACAACAATGTGGCATCCTGCCAAGAATATCACTGAGAAACTGTTCTAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2098518 540 -   3067355 GGATGGAGA-TAGCTATCACAGCTAATTTAACTTTTTTATATATTTCAGCAAAGCTTTTAACAAGACATCAAAAGGAATTATTGATAACAATATTTTGGAAATATTAAATAATTTTGTTAAAAGTTTTCTGAGTTTGGTAGTG-ACCTTCTGAGTATAGTTTGAATGGTCTTCAAAGGTAATTTTTAACACTTTTGCAGGGCTGAACTTGGCCTTGAATTTTAGAGATGTTAGACA----CAATTAAAGAATTCAAATTAATAAAACAAATATGTATAATGTAGTCTTTATATTTCCTTTTTAAAAATGT-----------TTCATGCC---------------------------------TTTTCTCATTCCCAGATTAGACTAcctgacaagctacatctcaaatttggcccctaccatactgaagaattggggaagaagtttcaggtaactcgagataacccattcctttccctgtaaatacagctcaaagcgtttttctcagtgatgattggaCTATAGATTCTTTGTCATCTTAGTACAACAATGTGGCATCATGCCAAGAATATCACTGCGGAACTGTTCTAA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1712971 542 -   2232465 GAATGTAGACTAACAATCACATCTAATTTTACTTATATGTATATTTTGGCAAAGCTTTTTACAAGACATCAAGGAAAATAATTGATACATATGTTTTGGAAATATTAAATAGTTTTTATGAAAGTTTTTGGAG-----------A--------------------------TAAAAGATAA-TTTCAACACTTTCTCAGGCCTGAACTTGGGCTTTAATTTTAGAGATATCAGACAAATGCAATGAAAGGGATTAAATTAATAAGACatatatatataatgt-gtatgtatattacatatgcatacatatatattatacagtacatattatatatgtatatatatataGAGAGAGAATTTAGTTTTTATGTTTTC---TTAAACTCTCTGGCAAGTCATTTCTCAAATTTGACTTATAGCATAATAAGAAATTGGGGAAAAAA-TTCAAGTAACTCGAGATACCCCATTCTCTTCCCTGTAAACACAGTTCAAAACAATTTTCTCAGTGAAAGCTATATTATAGAGTCCTTACCATC----TACCACAGTGTGGTATCATGTTGAGACCATTCCTGAAGAACTGCTCTA-
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            304153 8489 -    859332 T
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171589458 4909 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1126804.000000
s hg38.chr6_GL000254v2_alt    373605 199 +   4827813 CCAGGATAACTCCTTGAAGGGCATTAATTGCTACTTTGGGATTTACCCTCCCAGTGGCCCAAGTCAAGGAAAGCAAGTCACATT----CTTTTGTTTCCAAAAAGGGCCCATT-GACTCTAAGATAAA-GACCCATCCCTTGATACACTGAAAGCTCTAATAAGTT--TATCTT-TTGGGTAAAACTAAATTTTTTT--AGTAGACTCAG
s panTro5.chr6              29348211 199 + 175400573 CCAGGATAACTCCTTGAAGGGCATTAACTGCTACTTTGGGATTTACCCTCCCAGTGGCCCAAGTCAAGGAAAGCAAGTCACATT----CTTTTGTTTCCAAAAAGGGCCCATT-GACTCTAAGATAAA-GACCCATCCCTTGATACACTGAAAGCTCTAATAAGTT--TATCTT-TTGGGTAAAACTAAATTTTTTT--AGTAGACTCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29593961 199 + 173848474 CCAGGATAACTCCTTGAAGGGCATTAACTGCTACTTTGGGATTTACCCTCCCAGTGGCCCAAGTCAAGGAAAGCAAGTCACATT----CTTTTGTTTCCAAAAAGGGCCCATT-GACTCTAAGATAAA-GACCCATCCCTTGATACACTGAAAGCTCTAATAAGTT--TATCTT-TTGGGTAAAACTAAATTTTTTT--AGTAGACTCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5391603 199 +   6154872 CCAGGATAACTCCTTGAAGGGCATTAATTGCTACTTTGGGATTTACCCTCCCAGTGGCCCAAGTCAAGGAAAGCAAGTCACATT----CTTTTGTTTCCAAAAAGGGCCCATT-GACTCTAAGATAAA-GACCCATCTCTTGATACACTGAAAGCTCTAATAAGTT--TATCTT-TTGGGTAAAACTAAATTTTTTT--AGTAGACTCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29555239 199 + 172585720 CCAGGACAACTCCTTGAAGGGCATTAATTGCCGCTTTGGGATTTACCCTCCCAGTAGCCCCAGTCAAGGAAAACAAGTCGCATT----CTTTTGTTTCCAAAAAGGGCCCATTGGACTCTGAGATAAA-GGCCCATCCCTTGATACACTGAAAGCTCTCATAAGTT--TATCTT-TTGGGTAAAACTAAA-TTTTTT--AGTAGACTCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29216382 199 - 170955103 CCAGGACAACTCCTTGAAGGGCATTAATTGCCGCTTTGGGATTTACCCTCCCAGTAGCCCCAGTCAAGGAAAACAAGTCGCATT----CTTTTGTTTCCAAAAAGGGCCCACTGGACTCTGAGATAAA-GGCCCATCCCTTGATACACTGAAAGCTCTCATAAGTT--TATCTT-TTGGGTAAAACTAAA-TTTTTT--AGTAGACTCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2224371 199 -   2996164 CCAGGACAACTCCTTGAAGGGCATTAATTGCCGCTTTGGGATTTACCCTCCCAGTAGCCCCAGTCAAGGAAAACAAGTCACATT----CTTTTGTTTCCAAAAAGGGCCCATTGGACTCTGAGATAAA-GGCCCATCCCTTGATACACTGAAAGCTCTCATAAGTT--TATCTT-TTGGGTAAAACTAAA-TTTTTT--AGTAGACTCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       11613 198 +    766320 CCAGGACAACTCCTTGAAGGGCATTAATTCCCACTTTGGGATTTACCCTCCCAGTGGTCCCAGTCGAGGAAAGCAAGTCACATT----CTTTTGTTTCCGAAAAGGGCCCATT-TACTCTAAGATAAA-GGCCCATCTCTTGATACACTGGAAGCTCTAACAAGTT--TATCTT-TTGAGTAAAACTAGT-TTTTTT--AGTAGACTCAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28519766 199 -  71996105 CCAGGACAACTCCTTGAAGGGCATTAATTGCCGCTTTGGGATTTACCCTCCCAGTAGCCCCAGTCAAGGAAAACAAGTCACATT----CTTTTGTTTCCAAAAAGGGCCCATTGGACTCTAAGATAAA-GGCCCATCCCTTGATACACTGAAAGCTCTCATAAGTT--TATCTT-TTGGGTAAAACTAAA-TTTTTT--AGTAGACTCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2233327 200 +   2316924 CCAGGACAACTCCTTGAAGGGCATTAATTGCCGCTTTGGGATTTACCCTCTCAGTGGCCCCAGTCAAGGAAAACAAGTCACATT----CTTTTGTTTCCAAAAAGGGCCCATTGGACTCTAAGATAAA-GGCCCATCCCTTGATACACTGAAAGCTCTCATAAGTT--TATCTT-TTGGGTAAAACTAAATTTTTTT--AGTAGACTCAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2099058 199 -   3067355 CCAGGATAACTCCTTGAAGGGCATTAATTGCCGCTTTGGGATTTACCCTCTTAGTAGCCCCAGTCAAGGAAAGCAAGTCACATT----CTTTTGTTTCCAAAAAGGGCCCATTGGACTCTAAGACAAA-GGCCCATCCCTTGATACACTGAAAGCTCTCATAAGTT--TCTCTT-TTGGGTAAAACTAAA-TTTTTC--AGTAGATTCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171584549 206 - 171630274 CCAGGACAACGCCTCGAAGGGCATTGATTGCAACCTTGGGATTTATACTCCCAAAGGTCCCAGTCAAGGAAAGAGTATCTCATTATTCTTTTTGTTTTCATAAAGCTACCATT-TACACTGGGATAAAGGGTCCATCCCCTGATACCTTGAATGCCCTGAAGTATTCCCACATT-CTGCTAAAAAGCAAATCTTTTG--GACAAACTCAG
i calJac3.chr4             T 4909 I 3281
s otoGar3.GL873742           1713513 178 -   2232465 ---------CTCCTCCAAGGGCATTAATTGCCACTTTGGGATTTGTCCTCCCAGTGGCTCTAGTCA--------------CATT----CTTTTGTTTCCATAGAGGACTCATT-TGCTCTAAGATAAAAGGTCCATTTC-TGATACTCTGAATGCTCTAATGCATT--TCTCTTATTGGCTAAAACCAAT-TTTTTTAAAGTAGACTCAG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            304153 8489 -    859332 T
e canFam3.chr35             26138836 1270 +  26524999 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=540039.000000
s hg38.chr6_GL000254v2_alt    373804 106 +   4827813 AGCTTTCTCTTCTGTAGCAATGATAGTCATAGCTACATTCAGAC--TGTTTTCCTAA-TTGATGTAGTAGATGAGGGAA--------GTGTAGG----CATTTATGTTGGTGATTTCAAGG
s panTro5.chr6              29348410 106 + 175400573 AGCTTTCTCTTCTGTAGCAATGATAGTCATAGCTACATTCAGAC--TGTTTTCCTAA-TTGGTGTAGTAGATGAGGGAA--------GTGTAGG----CATTTATGTTGGTGATTTCAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29594160 106 + 173848474 AGCTTTCTCTTCTGTAGCAATGATAGTCATAGCTACATTCAGAC--TGTTTTCCTAA-TTGGTGTAGTAGATGAGGGAA--------GTGTAGG----CATTTATGTTGGTGATTTCAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5391802 106 +   6154872 AGCTTTCTCTTCTGTAGCAATGATAGTCATAGCTACATTCAGAC--TGTTTTCCTAA-TTGATGTAGTAGATGAGGGAA--------GTGTAGG----CATTTATGTTGGTGATTTCAAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29555438 106 + 172585720 AGCTTTCTCTTCTATAGTAATGATAGTCATAGTTACATTCAGAC--TGTTTTCCTAA-ATGATGTAGTAGATGAGGGAA--------GTGTAGG----CATTTATGTTGGTGATTTCAAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29216581 106 - 170955103 AGCTTTCTCTTCTATAGTAATGATAGTCATAGTTACATTCAGAC--TGTTTTCCTAA-ATGATGTAGTAGATGAGGGAA--------GTGTAGG----CATTTATGTTGGTGATTTCAAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2224570 106 -   2996164 AGCTTTCTCTTCTATAGTAATGATAGTCATAGTTACATTCAGAC--TGTTTTCCTAA-ATGATGTAGTAGATGAGGGAA--------GTGTAGG----CATTTATGTTGGTGATTTCAAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       11811 110 +    766320 TGCTTTCTCTTTTGTAGCAATAATAGTCATCGTTACATT-AGAT--TGTTTTCCTAATTTGATGTAGTAAATGAATGAA--------GTGTAGGCAGCCATTTATACTGGTGATTTCAAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28519965 106 -  71996105 AGCTTTCTCTTCTATAGCAATGATAGTCATAGTTACATTCAGAC--TGTTTTCCTAA-ATGATGTAGTAGATGAGGGAA--------GTGTAGG----CATTTATGTTGGTGATTTCAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2233527 106 +   2316924 AGCTTTCTCTTCTATAGCAATGATAGTCATAGCTACATTCAGAC--TGTTTTCCTAA-ATGATGTAGTAGATGAGGGAA--------GTGTAGG----CATTTATGTTGGTGATTTCAAGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2099257 106 -   3067355 AGCTTTCTCTTCTGTAGCAATGATAGTCATAGTTACATTCAGAC--TGTTTTCCTAA-ATGATGTAGTAGATGAGGGAA--------GTGTAGG----CATTTATGTTGGTGATTTCAAGG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1713691 105 -   2232465 GGCTGTCT------------TGATAGTCACAGTTACTTTAAGACTTTGCTTTCCTAATTTGATGTAGTAGATTAGAAAACCTGGGGTATGCAGT----CATTTATGTTGGTAATTTCAAGG
i otoGar3.GL873742         C 0 I 2
e dasNov3.JH570037            304153 8489 -    859332 T
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=10505.000000
s hg38.chr6_GL000254v2_alt    373910 2 +   4827813 TG
s panTro5.chr6              29348516 2 + 175400573 TG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29594266 2 + 173848474 TG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5391908 2 +   6154872 TG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29555544 2 + 172585720 TG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29216687 2 - 170955103 TG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2224676 2 -   2996164 TG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       11921 2 +    766320 TG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28520071 2 -  71996105 TG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2233633 2 +   2316924 TG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2099363 2 -   3067355 TG
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            304153 8489 -    859332 T
e canFam3.chr35             26138836 1270 +  26524999 T
e otoGar3.GL873742           1713796 2 -   2232465 I
e calJac3.chr4             171584755 3281 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=681091.000000
s hg38.chr6_GL000254v2_alt    373912 134 +   4827813 ATCAAAATCAGAGATCAGATCAG--------------------TCTGTGCATGATGAGGGCATCAGCTAGGAAGACAATATACAGGGAATGTGGACAGATACAGGAAGGACAGAGTGAAAGGCATTGTTTGAGT-ACTGCTTAAGTACTAGGTAA---
s panTro5.chr6              29348518 154 + 175400573 ATCAAAATCAGagatcagatcagatcagatcagatcaTCATGCCCTGTGCATGATGAGGGCATCAGCTGGGAAGACAATATACAGGGAATGTGGACAGATACAGGAAGGACAGAGTGAAAGGCATTGTTTGAGT-ACTGCTTAAGTACTAGGTAA---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29594268 154 + 173848474 ATCAAAATCAGagatcagatcagatcagatcagatcaTCATGCCCTGTGCATGATGAGGGCATCAGCTGGGAAGACAATATACAGGGAATGTGGACAGATACAGGAAGGACAGAGTGAAAGGCATTGTTTGAGT-ACTGCTTAAGTACTAGGTAA---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5391910 134 +   6154872 ATCAAAATCAGAGATCAGATCAG--------------------TCTGTGCCTGATGAGGGCATCAGCTAGGAAGACAATATACAGGGAATGTGGACAGATACAGGAAGGACAGAGTGAAAGGCATTGTTTGAGT-ACTGCTTAAGTACTAGGTAA---
i gorGor5.CYUI01015250v1   C 0 I 1
s rheMac8.chr4              29555546 134 + 172585720 ATAACAATCAGAGATCAGATCAG--------------------TCTGTGCATGATGAGGGAAACAGTTGGGAAGACAATATACAAGGAATGTGGACAGACACAGGAAGGACAGAGTGAAAGGCATTGTCTGAGT-ACTGCTTAAGTACTAGGTAA---
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              29216689 134 - 170955103 ATAACAATCAGAGATCAGATCAG--------------------TCTGTGCATGATGAGGGAAACAGTTGGGAAGACAATATACAAGGAATGTGGACAGACACAGGAAGGACAGAGTGAAAGGCATTGTTTGAGT-ACTGCTTAAGTACTAGGTAA---
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     2224678 134 -   2996164 ATAACAATCAGAGATCAGATCAG--------------------TCTGTGCATGATGAGGGAAAGAGTTGGGAAGACAATATACAAGGAATGTGGACAGACACAGGAAGGACAGAGTGAAAGGCATTGTTTGAGT-ACTGCTTAAGTACTAGGTAA---
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012002711v1       11923 134 +    766320 ATCAAAGTCAGAGATCAGATCCG--------------------TCTATTCATGATGAGGGCATCGGTTGGGAAGACAATATACAAGGAATGTGGAGAGACACAGGAAGGACAGAGTGAAAGGCATTGTTTGAGT-ACTGCTTAATTACTAGAAAA---
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17             28520073 134 -  71996105 ATAACAATCAGAGATCAGATCAG--------------------TCTGTGCATGATGAGGGAAACAGTTGGGAAGACAATATACAAGGAATGTGGACAGACACAGGAAGGACAGAGTGAAAGGCATTGTTTGAGT-ACTGCTTAAGTACTAGGTAA---
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012104165v1     2233635 132 +   2316924 ATAACAATC--AGATCAGATCAG--------------------TCTGTGCATGATGAGGGCATCGGTTGGGAAGACAATATACAAGGAATGTGGACAGACACAGGAAGGACAGAGTGAAAGGCATTGTTTGAGT-ACTGCTTAAGTACTAGGTAA---
i manLeu1.NW_012104165v1   C 0 I 1
s colAng1.NW_012115566v1     2099365 134 -   3067355 ATAACAATCAGAGATCAGATCAG--------------------TCTGTGCATGATGAGGGAATCAGTTGGGAAGACAATATACAAGGAATGTGGACAGACACAGGAAGGACAGAGTGAAAGGCATTGTTTCAGT-ACTGCTTAAGTACTAGGTAA---
i colAng1.NW_012115566v1   C 0 I 873
s otoGar3.GL873742           1713798 138 -   2232465 ATCAAAACTAGATATCAGATCAG--------------------TTCACATATGATGAAGGCCTATAGTTTGAAGACAACATACAGGACATGTGGACAGACACAGGAAGGACAGAATGAAGGAAGTTGTTCCAGTAACTGCTTAAACACTAGGTAAGAA
i otoGar3.GL873742         I 2 C 0
e dasNov3.JH570037            304153 8489 -    859332 T
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=673408.000000
s hg38.chr6_GL000254v2_alt    374046 139 +   4827813 TATAT-AAAGAAATATTATGGTAAGAAT-AAAAAAAC-TTGGCCAGTGACATGGGGATGGGGAAAAGAGATTATTTTCTCCCTCCGTTATACCTGATTTCCAAAACTAGAGAGGATCACTTATTCCTAGTCCATGAAAGCAA
s panTro5.chr6              29348672 139 + 175400573 TATAT-AAAGAAATATTATGGTAAGAAT-AAAAAAAC-TTGGCCAGTGACATGGGGATGGGGAAAAGAGATTATTTTCTCCGTCCATTATACCTGATTTCCAAAACTAGAGAGGATCACTTATTCGTAGTCCATGAAAGCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29594422 139 + 173848474 TATAT-AAAGAAATATTATGGTAAGAAT-AAAAAAAC-TTGGCCAGTGACATGGGGATGGGGAAAAGAGATTATTTTCTCCCTCCATTATACCTGATTTCCAAAACTAGAGAGGATCACTTATTCGTAGTCCATGAAAGCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5392045 140 +   6154872 TGTAT-AAAGAAATATTATGATAAGAATAAAAAAAAC-TTGGCCAGTGACATGGGGATGGGGAAAAGAGATTATTTTCTCCCTCCATTATGCCTGATTTCCAAAACTAGAGAGGATCACTTATTCCTAGTCCATGAAAGCAA
i gorGor5.CYUI01015250v1   I 1 C 0
s rheMac8.chr4              29555681 136 + 172585720 AGTAT-AAAGAAATATTA---TAAGAAT-AAAAAAAC-TTGGCCAGTGACATGGGGAGGGGGAAAAGATGTCATTTTCTCCCTCCATTATACCTGATTTCCAAAACTAGAGAGGATCATTTATTCCTAGTCCATGAAAGCAA
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              29216824 136 - 170955103 AGTAT-AAAGAAATATTA---TAAGAAT-AAAAAAAC-TTGGCCAGTGACATGGGGAGGGGGAAAAGATGTCATTTTCTCCCTCCATTATACCTGATTTCCAAAACTAGAGAGGATCATTTATTCCTAGTCCATGAAAGCAA
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     2224813 136 -   2996164 AGTAT-AAAGAAATATTA---TAAGAAT-AAAAAAAC-TTGGCCAGTGACATGGGGAGGGGGAAAAGATGTCATTTTCTCCCTCCATTATACCTGATTTCCAAAACTAGAGAGGATCATTTATTCCTAGTCCATGAAAGCAA
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1       12058 137 +    766320 AGTAT-AAAGAAATAATATGGTAAGAAT-TTAAAAAC-TTGGCCAGTGATACGGAGATGGGGAAAAGAGGCCATTT--TCCCCCCATTATACCCGATTTCCAAAACTAGAGAGGATCATTTGTTCATGGTCCATGAAAGCAT
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17             28520208 135 -  71996105 AGTAT-AAAGAAATATTA---TAAGAAT--AAAAAAC-TTGGCCAGTGACATGGGGATGGGGAAAATATGTCATTTTCTCCCTCCATTATACTTGATTTCCAAAACTAGAGAGGATCATTTATTCCTAGTCCATGAAAGCAA
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012104165v1     2233768 136 +   2316924 AGTAT-AAAGAAATATTA---TAAGAAT-AAAAAAAC-TTGGCCAGTGACATGGGGATGGGGAAAAGATGTCATTTTCTCCCTCCATTATACCTGATTTCCAAAACTAGAGAGGATCATTCATTCCTAGTCCATGAAAGCAA
i manLeu1.NW_012104165v1   I 1 C 0
s colAng1.NW_012115566v1     2100372 136 -   3067355 TGTAT-AAAGAAATATTG---TAAGAAT-AAAAAAAC-TTGGGCAGTGACATGGGAATGGGGAAAAGATGTCATTTTCTCCCTCCATTATACCTGATTTCCAAAACTAGAGAGGATCATTTATTCCTAGTCCATGAAACCAA
i colAng1.NW_012115566v1   I 873 C 0
s otoGar3.GL873742           1713936 138 -   2232465 --TATAAAAGAACTAATATGATTAGAAT-ACAAAGTTGTTGTTCAGTGATATGGAGATGGGGAAAAGATGCCACTTT-TCCCTCTATAATGCTTGTTTTCCCAAACTAGAAAGGATAATTTATCCACAGCCCATAAAAGCAA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            304153 8489 -    859332 T
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1098977.000000
s hg38.chr6_GL000254v2_alt    374185 240 +   4827813 CTTTTAACttttaa-tttttgtgggtacacaatagg------------------tgtatgcatttat----------------------ggggta---catgaga--ttttttTTGATAA--------------------TTTCTTTCtttttattttttg---------tagagacatggtctcacttcattgcccaggctag----------------------------tctcgaacttctgggctccagagatccacccaccttggcctcccaaagtgtcaggattacaggtgtgagccatggcacccgacccaggtatttttgatacaggcatacaat
s panTro5.chr6              29348811 240 + 175400573 CTTTTAACttttaa-tttttgtgggtacacaatagg------------------tgtatgcatttat----------------------ggggta---catgaga--ttttttTTGATAA--------------------TTTCTTTCtttttattttttg---------tagagacatggtctcacttcattgcccaggctag----------------------------tctcgaacttctgggctccagagatccacccaccttggcttcccaaagtgtcaggattacaggtgtgagccacggcacccgacccaggtatttttgatacaggcatacaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29594561 240 + 173848474 CTTTTAACttttaa-tttttgtgggtacacaatagg------------------tgtatgcatttat----------------------ggggta---catgaga--ttttttTTGATAA--------------------TTTCTTTCtttttattttttg---------tagagacatggtctcacttcattgcccaggctag----------------------------tctcgaacttctgggctccagagatccacccaccttggcttcccaaagtgtcaggattacaggtgtgagccatggcacccgacccaggtatttttgatacaggcatacaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5392185 239 +   6154872 CTTTTAACttttaa-tttttgtgggtatgcaatagg------------------tgtatgcatttat----------------------ggggta---catgaga--ttttttTTGATAA--------------------TTTCTTTCGttttattttttg---------tagagacatggtctcacttcattgcccaggctag----------------------------tctcgaacttct-ggctccagagatccacccaccttggcctcccaaagtgtcaggattacaggtgtgagccacggtgcccgacccaggtatttttgatacaggcatacaat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29555817 242 + 172585720 CTTTTAACttttaa-tttttgtgggtacacattagg------------------catatgtattcat----------------------ggggta---catgagaatttttttttgataA--------------------TTTCTTCCtttttattttttg---------tagagacagggtttcacttcattgcccaggctag----------------------------tctcgaacttctgggctccagagatccaccctccttggtctcccaaagtgttgggattacaggcgtgagccacagtgccggaccCAGGTATttttgacacaggcatacaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29216960 242 - 170955103 CTTTTAACttttaa-tttttgtgggtacacattagg------------------catatgtattcat----------------------ggggta---catgagaatttttttttgataA--------------------TTTCTTCCtttttattttttg---------tagagacagggtttcacttcattgcccaggctag----------------------------tctcgaacttctgggctccagagatccaccctccttggtctcccaaagtgttgggattacaggcgtgagccacagtgccggaccCAGGTATttttgacacaggcatacaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2224949 242 -   2996164 CTTTTAACttttaa-tttttgtgggtacacattagg------------------catatgtattcat----------------------ggggta---catgagaatttttttttgataA--------------------TTTCTTCCtttttattttttg---------tagagacagggtttcacttcattgcccaggctag----------------------------tctcgaacttctgggctccagagatccaccctccttggtctcccaaagtgttgggattacaggcgtgagccacagtgccggaccCAGGAATttttgacacaggcatacaat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       12195 239 +    766320 CTTTTACtttttaa-tttttaagggtacatactagg------------------tgagtgtatttat----------------------ggggta---catgaga---tttttttgataA--------------------TTTCTTTCtttttattttttg---------tagagacagggtctcatttcattgtccaggctag----------------------------tcttgaacttctgggctcccgagatccacccaccttggcctcccaaagtgttgggattacaggtgtgagccacggtgaccgaccaagatatttttgatacaggcgTACAAT
i cerAty1.NW_012002711v1   C 0 I 34
s chlSab2.chr17             28520343 241 -  71996105 CTTTTAACttttaa-tttttgtgggtacacattagg------------------catatgtattcat----------------------ggggta---catgagattttt-tTTTGATAA--------------------TTTCTTCCtttttattttttg---------tagagacagggtttcacttcattgcccaggctag----------------------------tctcgaacttctgggctccggagatccacccaccttggtctcccaaagtgttgggattacaggcgtgagccacagtgccggaccCAGGTATttttgacacaggcatacaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2233904 241 +   2316924 CTTTTAACttttaa-tttttgtgggtacacatta-g------------------cgtatgtatttat----------------------ggggta---catgagatttttgctttgataA--------------------TTTCTTCCtttttattttttg---------tagagacagggtttcacttcattgcccaggctag----------------------------tctcgaacttctgggttccagagatccacccaccttggcctcccaaagtgttgggattacaggcatgagccacggtgccggaccCAGGTATttttgacacaggcatacaat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2100508 242 -   3067355 CTTTTAACttttaa-cttttgtgggtacacattagg------------------cgtatgtatttat----------------------ggggta---catgagattttttTTTTGATAA--------------------TTTCTTCttttttattttttg---------tagagacagggtttcacttcattgcccaggctag----------------------------tctcaaacttctgggctccagagatccacccaccttggcctcccaaagtgttgggattacaggcatgagccacggtgctggaccCAGGTATttttgacacaggcatacaat
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742            647257 310 +   2232465 CCTAAAAATTTCAACCTTTTTTTGGTTTGCATTTGGTATTTTCTTTTTCTCTCTCATATGTCTTTCTAACCTCTCTATAAGAATGCTGAAGGATGAGTCATGAAA--------TTGATAAAAATACCTCACACCTGCTGTTTTGTTTTGTTTTGTGTTTGGGGGGGGAGtttgagacagagtctcactttgtcacccttggtagcatgctgtggcatcatagctcacagcaacctcaaactcttggactcaagagattctgttgcctcagcctgcccagtagctaggactacagtcgcctgccacaa-----aacctggctat--------------------
i otoGar3.GL873742         n 0 C 0
e dasNov3.JH570037            304153 8489 -    859332 T
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=54243.000000
s hg38.chr6_GL000254v2_alt    374425 12 +   4827813 gtgtaataatca
s panTro5.chr6              29349051 12 + 175400573 gtgttataatca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29594801 12 + 173848474 gtgtaataatca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5392424 12 +   6154872 gtgtaataatca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29556059 12 + 172585720 gtgtaataatca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29217202 12 - 170955103 gtgtaataatca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2225191 12 -   2996164 gtgtaataatca
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28520584 12 -  71996105 gtgtaataatca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2234145 12 +   2316924 gtgtaataatca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2100750 12 -   3067355 gtgtaataatca
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742            647567 12 +   2232465 ttgttataatta
i otoGar3.GL873742         C 0 I 5092
e dasNov3.JH570037            304153 8489 -    859332 T
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e cerAty1.NW_012002711v1       12434 34 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=316232.000000
s hg38.chr6_GL000254v2_alt    374437 100 +   4827813 cagcaggctaaatggggtatccatcacctcaagcatttatcctttctttgtgttaaggataacttaaacttttgatatggcttttgataaggcttttaac
s panTro5.chr6              29349063 100 + 175400573 cagcaggctaaatgtggtatccatcacctcaagcatttatcctttctttgtgttaaggataacttaaacttttgatatggcttttgataaggcttttaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29594813 100 + 173848474 cagcaggctaaatgtggtatccatcacctcaagcatttatcctttctttgtgttaaggataacttaaacttttgatatggcttttgataaggcttttaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5392436  81 +   6154872 cagcacgctaaatggggtatccatcacctcaagcatttatcctttctttgtgttaaggataacttaaaCTTTTGATATGG-------------------C
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29556071  88 + 172585720 cagcagactaaatggagtatacatcacctcaagcatttatcctttctttgtgttaaggataacttaaattttTGATA------------AGACTTTTAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29217214  88 - 170955103 cagcagactaaatggagtatacatcacctcaagcatttatcctttctttgtgttaaggataacttaaattttTGATA------------AGGCTTTTAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2225203  88 -   2996164 cagcagactaaatggagtatacatcacctcaagcatttatcctttctttgtgttaaggataacttaaattttTGATA------------AGGCTTTTAAT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28520596  88 -  71996105 cagcagactaaatggagtatacatcacctcaagcatttatcctttctttgtgttaaggataacttaaattttTGATA------------AGGCTTTTAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2234157  88 +   2316924 cagtagactaaatggagtatacatcacctcaagcatttatcctttctttgtgttaaggataacttaaaCTTTTGATA------------AGGCTTTTAAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2100762  88 -   3067355 cagcagactaaatggagtatatatcaactcaagcatttatcctttctttgtgttaAGGATAACTTAAACTTTTGATA------------AGGCTTTTAAC
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            304153 8489 -    859332 T
e canFam3.chr35             26138836 1270 +  26524999 T
e otoGar3.GL873742            647579 5092 +   2232465 I
e calJac3.chr4             171584755 3281 - 171630274 I
e cerAty1.NW_012002711v1       12434  34 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=931116.000000
s hg38.chr6_GL000254v2_alt    374537 229 +   4827813 ttttgataaggcttttATTTTCTGCTCCACCAGGAAGAAGAAAATT--AACCCAGAAAAATTCCTACCTTTTCCTTGCTTGCATCTGGTAAGTTTTTGTTTGTTTG-CTTCTTATCTCATATCTCATTC--TAACCTCTCTATGTAAGATTGCTCAAAGATGGGTCATGCAATTGGCAAAGGTATCTCACAGCTAAA-TGTTGTTTTAGTTAATGTAATAAATTATCGAGGCAAC
s panTro5.chr6              29349163 229 + 175400573 ttttgataaggcttttATTTTCTGCTCCACCAGTAAGAAGAAAATT--AACCCAGAAAAATTCCTACCTTTTCCTTGCTTACATCTGGTAAGTTTTTGTTTGTTTG-CTTCTTATCTCATATCTCATTC--TAACCTCTCTATGTAAGATTGCTCAAGGATGGGTCATGCAATTGGCAAAGGTATCTCATAGCTAAA-TGTTGTTTTAGTTAATGTAATAAATTATCGAGGCAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29594913 229 + 173848474 ttttgataaggcttttATTTTCTGCTCCACCAGTAAGAAGAAAATT--AACCCAGAAAAATTCCTACCTTTTCCTTGCTTACATCTGGTAAGTTTTTGTTTGTTTG-CTTCTTATCTCATATCTCATTC--TAACCTCTCTATGTAAGATTGCTCAAGGATGGGTCATGCAATTGGCAAAGGTATCTCACAGCTAAA-TGTTGTTTTAGTTAATGTAATAAATTATCGAGGCAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5392517 229 +   6154872 TTTTGATAAGGCTTTTATTTTCTGCTCCACCAGTAAGAAGAAAATT--AACCCAGAAAAATTCCTACCTTTTCCTTGCTTGCATCTGGTAAGTTTTTGTTTGTTTG-CTTCTTATCTCATATCTCATTT--TAACCTCTCTATGTAAGATTGCTGAAGGATGGGTCATGCAATTGGCAAAGATATCTCACAGCTAAA-TGTTGTTTTAGTTAATGTAATAAATTATCGAGGCAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29556159 223 + 172585720 TTTTGATAAGGCTTTTATTTTCTGCCCCACCAGTAAGAAGAAAATT--AACCCAGAAAAATTCCTACCTTTTCCTTACTTGCATCTGGTAATTTTT------TTTC-TTTTTTATCTCATATCTCATTC--TAACCTCCCTATGTAAGACTGCTGAAGGATGGGTCATGCAATTGGCAAAGATATCTCACAGCTGCC-TCTTGTTTTAGTTAATGTACTAAATTATCGAGGCAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29217302 223 - 170955103 TTTTGATAAGGCTTTTATTTTCTGCCCCACCAGTAAGAAGAAAATT--AACCCAGAAAAATTCCTACCTTTTCCTTACTTGCATCTGGTAATTTTT------TTTC-TTTTTTATCTCATATCTCATTC--TAACCTCCCTATGTAAGACTGCTGAAGGATGGGTCATGCAATTGGCAAAGATATCTCACAGCTGCC-TCTTGTTTTAGTTAATGTACTAAATTATCGAGGCAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2225291 223 -   2996164 TTTTGATAAGGCTTTTATTTTCTGCCCCACCAGTAAGAAGAAAATT--AACCCAGAAAAATTCCTACCTTTTCCTTACTTGCATCTGGTAATTTTT------TTTC-TTTTTTATCTCATATCTCATTC--TAACCTCCCTATGTAAGACTGCTGAAGGATGGGTCATGCAATTGGCAAAGATATCTCACAGCTGCC-TCTTGTTTTAGTTAATGTACTAAATTATCGAGGCAAC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28520684 225 -  71996105 TTTTGATAAGGCTTTTATTTTCTGCCCCAACAGTAAGAAGAAAATT--AACCCAGAAAAATTCCTACCTTTTCCTTACTTGCATCTGGTAATTTTT----TGTTTC-TTTTTGATCTCATATCTCATTC--TAACCTCCCTATGTAAGACTGCTGAAGGATGGGTCATGCAATTGGCAAAGATATCTCACAGCTGCC-TCTTGTTTTAGTTAATGTACTAAATTATCGAGGCAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2234245 226 +   2316924 TTTTGATAAGGCTTTTATTTTCTGCTCCACCAGTAAGAAGAAAATT--AACCCAGAAAAATTCCTACCTTTTCCTTACTTGCATCTGGTAATTTTT----TGTTTCTTTTTTTATCTCGTATATCATTC--TAACCTCCCTATGTAAGACTGCTGAAGGATGGGTCATGCAATTGGCAAAGATATCTCACAGCTGCC-TCTTGTTTTAGTTAATGTACTAAATTATCAAGGCAAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2100850 225 -   3067355 TTTTGATAAGGCTTTTATTTTCTGCTCCACCAGTAAGAAGAAAATT--AACCCAGAAAAATTCCTGCCTTTTCCTTACTTGCATCTGGTAATTTTT----TGTTTC-TTTTTTATCTCATATCTCATTC--TAACCTCCCTATGTAAGACTGCTGAAGGATGGGTCATGCAATTGGCAAAGATAACTCACAGCTGCC-TCTTGTTTTAGTTAATGTACTAAATTATCGAGGCAAC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1714074 193 -   2232465 TTTTGATAAGGACTTTATTTTCTGCTCTTCTAGAAAGAAGAAAATTCCAACCT--AAAAATTCCAGCCTTTCCCTTACTTGCATCTAACA----TT-----------TTTTTTCTCTCATATTTCTTTCTATAATCTCTC----TAAGAATGTTGAAGGATGGGTTGTGGAACTGATAAAAATACTTCACAGCTGCCATTTTGCTTTAGTTAAT---------------------
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            304153 8489 -    859332 T
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e cerAty1.NW_012002711v1       12434  34 +    766320 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=673864.000000
s hg38.chr6_GL000254v2_alt    374766 135 +   4827813 TGTACAAGAAAGAAGAAAATTTTATCTGCATGAGAGAAGGTAACTATAACATTTGTGTTCATATTTCTCATGATGTATTATCTCCTGTTCTAGAGAAATTTTTAAAAA---TCTCTTGGAAAATTTTCATCTTCCCTC
s panTro5.chr6              29349392 135 + 175400573 TGTACAAGAAAGAAGAAAATTTTATCTGCATGAGAGAAGGTAGCTATAACATTTGTGTTCATATTTCTCATGATGTATTATCTCCTATTCTAGAGAAATTTTTAAAAA---TCTCTTGGAAAATTTTCATCTTCCCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29595142 135 + 173848474 TGTACAAGAAAGAAGAAAATTTTATCTGCATGAGAGAAGGTAGCTATAACATTTGTGTTCATATTTCTCATGATGTATTATCTCCTATTCTAGAGAAATTTTTAAAAA---TCTCTTGGAAAATTTTCATCTTCCCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5392746 135 +   6154872 TGTACAAGAAAGAAGAAAATTTTATCTGCATGAGAGAAGGTAACTATAACATTTGTGTTCATATTTCTCATGATGTATTATCTCCTATTCTAGAGAAATTTTTAAAAA---TCTCTTGGAAAATTTTCATCTTCCCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29556382 133 + 172585720 --TATAAGAAAAAAGAAAATTATATCTGCATGAGAGGAAGTAACTATAACATTTGTGTTCATATTTATCATGATGTATTATCTCCTATTCTAGAGAAATTTTTGAAAA---TCTCTTGGAAAATTTTCATCTTCCCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29217525 133 - 170955103 --TATAAGAAAAAAGAAAATTATATCTGCATGAGAGGAAGTAACTATAACATTTGTGTTCATATTTATCATGATGTATTATCTCCTATTCTAGAGAAATTTTTGAAAA---TCTCTTGGAAAATTTTCATCTTCCCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2225514 133 -   2996164 --TATAAGAAAAAAGAAAATTATATCTGCATGAGAGGAAGTAACTATAACATTTGTGTTCATATTTATCATGATGTATTATCTCCTATTCTAGAGAAATTTTTGAAAA---TCTCTTGGAAAATTTTCATCTTCCCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       12468 135 +    766320 TGTACAAGAAAGAAGAAAACTGTATCGGCATGAGAGGAAGTAACTATAACATTTGTGTTCACGTTTCTCATGATGTGTTATCTCCCATTCTAGAGAAATTTTAAAAAA---TGTCTTGGAAAACTTTCATCATCCCTC
i cerAty1.NW_012002711v1   I 34 C 0
s chlSab2.chr17             28520909 133 -  71996105 --TACAAGAAAAAAGAAAATTATATCTGCATGAGAGGAAGTAACTATAACATTTGTGTTCATATTTATCATGATGTATTATCTCCTATTCTAGAGAAATTTTTGAAAA---TCTCTTGGAAAATTTTCATCTTCCCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2234471 130 +   2316924 --TACAAGAAAAAAGAAA---ATATCTGCATGAGAGGAAGTAACTATAACATTTGTGTTCATATTTATCATGATGTATTATCTCCTATTCTAGAGAAATTTTTGAAAA---TCTCTTGGAAAATTTTCATCTTCCCTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2101075 133 -   3067355 --TACAAGAAAAAAGAAAATTATATCTGCATGAAAGGAAGTAACTATAACATTTGTGTTCATATTTATCATGATGTATTATCTCCTATTCTAGAGAAATTTTTGAAAA---TCTCTTGGAAAATTTTCATCTTCCCTC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1714267 110 -   2232465 ---------------------TTATCTGCATCAGAGGAAGT-------ATATTTGGAGCCATATTTCTCATGATGTATTATCTTCCATTGTGGAGAAATTAAAAAAAAATGTTCCTTGGAAAACTTCCATCATTCTTC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            304153 8489 -    859332 T
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=2362189.000000
s hg38.chr6_GL000254v2_alt    374901 445 +   4827813 AAG-GGCTGTGACCTCT-AAGTCAAGTAATCTTCATGATTTACTCTTTGACTATTGCTGCTTTTTGATTCAGCTATAGCTTTTAAAATTTTCTTTTAAAA--CAATGTGCAGACTGATTTTCCTGGATGGTTGTTTAAGTTGTTGAAAGTAATCTAGATTAGTGTAACAACTGGCTAATGATTATTTACATTACCAAGTCTGTTAA-AAGGTCTGAGGTCAATCTTT-------------TAATCTTGGGACCAAACTGAATGTTCCAAACTTTTCTGCTGAAACTCAACCAATTAGCTACTCCTGACATTTCTTTCAGGCATTGAATTTATAAAACATGAGCGATTAAGAGACCCCT--AAAAGAGGCAATCACAGGTGGCCCCACAATGATTTCTTTCTTCCTGTGCCATAGCCAAT-TGGGAGGTATAAGAAAAATAACTGACTGTGGAAGGAATGAAATAGA
s panTro5.chr6              29349527 445 + 175400573 AAG-GGCTGTGACCTCT-AAGTCAAGTAATCTTCATGATTTACTCTTTGACTATTGCTGCTTTTTGATTCAGCTATAGCTTTTAAAATTTTCTTTTAAAA--CAATGTGCAGACTGATTTTCCTGGATGATTGTTTAAGTTGTTGAAAGTAATCTAGATTAGTGTAACAACTGGCTAATGATTATTTACATTACCAAGTCTGTTAA-AAGGTCTGAGGTCAATCTTT-------------TAATCTTGGGACCAAACTGAATGTTCCAAACTTTTCTGCTGAAACTCAACCAATTAGCTGCTCCTGACATTTCTTTCAGGCATTGAATTTATAAAACATGAGCGATTAAGAGACCCCC--AAAAGAGGCAATCACAGGTGGCCCCACAATGATTTCTTTCTTCCTGTGCCATAGCCAAT-TGGGAGGTATAAGAAAAATAACTGACTGTGGAAGGAATGAAATAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29595277 445 + 173848474 AAG-GGCTGTGACCTCT-AAGTCAAGTAATCTTCATGATTTACTCTTTGACTATTGCTGCTTTTTGATTCAGCTATAGCTTTTAAAATTTTCTTTTAAAA--CAATGTGCAGACTGATTTTCCTGGATGGTTGTTTAAGTTGTTGAAAGTAATCTAGATTCGTGTAACAACTGGCTAATGATTATTTACATTACCAAGTCTGTTAA-AAGGTCTGAGGTCAATCTTT-------------TAATCTTGGGACCAAACTGAATGTTCCAAACTTTTCTGCTGAAACTCAACCAATTAGCTGCTCCTGACATTTCTTTCAGGCATTGAATTTATAAAACATGAGCGATTAAGAGACCCCC--AAAAGAGGCAATCACAGGTGGCCCCACAATGATTTCTTTCTTCCTGTGCCATAGCCAAT-TGGGATGTATAAGAAAAATAACTGACTGTGGAAGGAATGAAATAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5392881 445 +   6154872 AAG-GGCTGTGACCTCT-AAGTCAAGTAATCTTCATGATTTACTCTTTGACTATTGCTGTTTTTTGATTCAGCTATAGCTTTTAAAATTTTCTTTTAAAA--CAATGTGCAGACTGATTTTCCTGGATGGTTGTTTAAGTTGTTGAAAGTAATCTAGATTAGTGTAACAACTGTCTAGTGATTATTTACATTACCAAGTCTGTTAA-AAGGTCTGAGGTCAATCTTT-------------TAATCTTGGGACCAAACTGAATGTTCCAGACTTTTCTGCTGAAACTCAACCAATTAGCTACTTCTGACATTTCTTTCAGGCAATGCATTTATAAAACATGAGCGATTAAGAGACCCCC--AAAAGAGGCAATCACAGGTGGCCCCACAATGATTTCTTTCTTCCTGTGCCATAGCCAAT-TGGGAGGTATAAGAAAAATAACTGACTGTGGAAGGAATGAAATAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29556515 445 + 172585720 TAG-GGCTATGACCTTT-AAGTGAAGTAATCTTCACGATTTACTCTTTGACTATTGCTATTTTTTGATTCAGCTGTAGTTTTTAAAATTTTCTTTTAAAA--CAATGTGCAGACTGATTTTCCTGGATGGTT-TCTAAGTAGTTGAAAGTAATCTAGATGAGTGTAACAACTGGCTAATGATTATTTACATTACCAAGTCTATTAATAGGGTCTGAAGTCAATCTTT-------------TAATCTTGGGACCAAACTGAATGTTCCAAACTTTTCTGCTGAAACTCAACCAGTTCGCTACTCTTGACATCTTTTTCAGGAGTTGCATTTATAAAACAGGAGCGATTAAGAGACCCCC--AAAAGAGGCAATCACAGGTGGCTCCACAACGATTTCTTTCTTCCTGTGCCATAGCCAAT-TGGGAGGTATAAGAAAAATAACTGACTGTGGGAGTAATGAAATAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29217658 445 - 170955103 TAG-GGCTATGACCTTT-AAGTGAAGTAATCTTCACGATTTACTCTTTGACTATTGCTATTTTTTGATTCAGCTGTAGTTTTTAAAATTTTCTTTTAAAA--CAATGTGCAGACTGATTTTCCTGGATGGTT-TCTAAGTAGTTGAAAGTAATCTAGATGAGTGTAACAACTGGCTAATGATTATTTACATTACCAAGTCTATTAATAGGGTCTGAAGTCAATCTTT-------------TAATCTTGGGACCAAACTGAATGTTCCAAACTTTTCTGCTGAAACTCAACCAATTCGCTACTCTTGACATCTTTTTCAGGAGTTGCATTTATAAAACAGGAGCGATTAAGAGACCCCC--AAAAGAGGCAATCACAGGTGGCTCCACAACGATTTCTTTCTTCCTGTGCCATAGCCAAT-TGGGAGGTATAAGAAAAATAACTGACTGTGGGAGTAATGAAATAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2225647 445 -   2996164 TAG-GGCTATGACCTTT-AAGTGAAGTAATCTTCACGATTTACTCTTTGACTATTGCTATTTTTTGATTCAGCTGTAGTTTTTAAAATTTTCTTTTAAAA--CAATGTGCAGACTGATTTTCCTGGATGGTT-TCTAAGTAGTTGAAAGTAATCTAGATGAGTGTAACAACTGGCTAATGATTATTTACATTACCAAGTCTATTAATAGGGTCTGAAGTCAATCTTT-------------TAATCTTGGGATCAAACTGAATGTTCCAAACTTTTCTGCTGAAACTCAACCAGTTCGCTACTCTTGACATCTTTTTCAGGAGTTGCATTTATAAAACAGGAGCGATTAAGAGACCCCC--AAAAGAGGCAATCACAGGTGGCTCCACAACGATTTCTTTCTTCCTGTGCCATAGCCAAT-TGGGAGGTATAAGAAAAATAACTGACTGTGGGAGTAATGAAATAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       12603 443 +    766320 TAG-GGCAGTGACCTCT-GAGTGAAGTAATCTTCATGATTTACTCTTTGACTATTGCTGTTTCTTGATTCAGCCATAACTTTTAAATTTTTCTTTTAAAA--CAATGTGCAGACTAATTTTCTTGGATGGTT-TCTAAGTTGTTGAAAGTAATCTAGATGAGTGTAACAACTGGCTAATGATTA-TTACATTACCACATCTATTAATAAGGTCTG-AGTGAATCTTT-------------TAATCTTGGGATCAAACTGAATGTTCCAAACTTTTCTGCTGAAACTCAACCAATTCGCTACTCCTGACATCTTTTTCAGGAGTTGCATTTATAAAACATGAACGATTAAAAGACCCTT--GAAAGAAGCAGTCACAGGTGGCCCCACAATGATTCCTTTCTTCCTGTGCGGTAATCGGT-TGGGAGGTATAAGAAAAATAACTGACTGTGGGAGGAATGAAATAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28521042 445 -  71996105 TAG-GGCTATGACCTTT-AAGTGAAGTAATCTTCATGATTTACTCTTTGACTACTGCTGTTTTTTGATTCAGCTGTAGCTTTTAACATTTTCTGTTAAAA--CAATGTGCAGACTAATTTTCCTGGATGGTT-TCTAAATAGCTGAAAGTAATCTAGATGAGTGTAACAACTGGCTAATGATTATTTACATTACCAAGTCTATTAATAGGGTCTGAGGTCAATCTTT-------------TAATCTTGGGACCAAACTGAATGTTCCAAACTTTTCTGCTGAAACTCAACCAATTGGCTACTCCTGACATTTTTTTCAGGAGTTGCATTTATAAAACATGAGCAATTAAGAGACCCCC--AAAAGAGGTAATCACAGGTGGCTCCACAATGATTTCTTTCTTCCTGTGCCATAGCCAAT-TGGGAGGTATAAGAAAAATAACTGACTGTGGGAGTAATGAAATAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2234601 445 +   2316924 TAG-GGCTATGACCTTT-AAGTGAAGTAATCTTCACGATTTACTCTTTGACTATTGCTATTTTTTGATTCAGCTGTAGTTTTTAAAATTTTCTTTTAAAA--CAATGTGCAGACTGATTTTCCTGGATGGTT-TCTAAGTAGTTGAAAGTAATCTAGATGAGTGTAACAACTGGCTAATGATTATTTACATTACCAAGTCTATTAATAGGGTCTGAAGTCAATCTTT-------------TAATCTTGGGACCAAACTGAATGTTCCAAACTTTTCTGCTGAAACTCAACCAATTCGCTACTCCTGACATCTTTTTCAGGAGTTGCATTTATAAAACAGGAGCGATTAAGAGACCCCC--AAAAGAGGCAATCACAGGTGGCCCCACAACGATTTCTTTCTTCCTGTGCCATAGCCAAT-TGGGAGGTATAAGAAAAATAACTGACTGTGGGAGGAATGAAATAGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2101208 444 -   3067355 AAG-GGCTGTGACCTTT-AAGTGAAGTAATCTTCATGATTTACTCTTTGACTATTGCTGTTTTTTGATTCAGCCATAGCTTTTAAAATTTTCTTTTAAAA--CAATGTGTAGACTGATTTTCCTGGATGGTT-TCTAAGTTGTTGAAAGTAATTTAGATGAGTGTAACAACTGGCTAATGATTATTTACATTACCAAGTCTATTAATAGGGTCTGAGGTCAGTCTTT-------------TAATCTTGGGACCAAACTGAATGTTCCAAACTTTTCTGCTGAAACTCAACCAATTCGCTACTCCTGACATTTTTTTCAGGAGTTGCATTTACAAAACATGAGCGATTAAGAGACCCCC--AAAAGAGGCAATCACAGGTGGCCCCACAATGATT-CTTTCTTCCTGTGCCATAGCCAAT-TGGAAGGTATAAGAAAAATAACTGACTGTGGGAGTAATGAAACAGA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1714377 385 -   2232465 AAATGGCAGTGACCTCT-AAGTGAAGTAATTTTCATGAGTCACTATTTGACTACTGCTATTGTTTGATTCACCTAACCGTTTTAAAAAC-----TTAAAA--AAATGTACTGTCTGATTATTCTGAATGACT-TCTGAGTTGTGGAAAGAAAGCTAGATTAGTGTAACCACT-----------------------AATTTTGTTAA-------------GAGTCTTA-------------TTGCCTTTAAGTCAAACTGAACATTCTTAACTTTCTTGCTGAAATTCAACCA----GCTACTCCTGACATCTTTTTCAAGAGTTGGCTTTCTAGAACATGAGCAATTGAGAGGC------------------CACAGGTGGCTCCGCTGTGAGTTCTTTCTTCTCGTGACACAACTTAT-TGGGAAGTGTGAGATCGAGAATTGGCCATGGAAAGAAGGAAGTAGA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            295664 428 -    859332 AAA-GGCAGTGTCCACTAAAATAAAGGACTCTTTATCATTTACTATTTGACAG------------------------------AAGATATTTATTTAAAAAGCATAGTGCTGGATGGTTATCCTGGATGGTT-TCTGAACCACAGAACATAATATGGAATATTGTAACAATCAGCTAATGATTCTTTATATTACCAATTATATTAA-AGGGTGTACAG-AAATCCTTGAGCTTGCCTGAATTATCTTGGG-TCAGATTTAATGTCCCTAGTTCTCTAGCTGTAACACAACTAATTAGATACACTTTACCTCCATTTCAAAAGTCACGATTACAATATTTGGACAATTAAGAGTTCTCCATAAAAGAGGTGATTGCAGGTAGGTGAGGTGTGTTTGGGTTTGTCTTTTGTTATATCCTGTCTAGAGAGTATGAGAAGAAT---TGGCTGCGGCAGTAAGGAAGCAGA
i dasNov3.JH570037         T 8489 I 21
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=230479.000000
s hg38.chr6_GL000254v2_alt    375346 44 +   4827813 GGGCATGTGGCAAAGCTGGAAGAGGCAAAGAATTCAGAGAAAAT
s panTro5.chr6              29349972 44 + 175400573 GGGCATGTGGCAAAGCTGGAAGAGGCAAAGAATTCAGAGAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29595722 44 + 173848474 GGGCATGTGGCAAAGCTGGAAGAGGCAAAGAATTCAGAGAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5393326 44 +   6154872 GGGCATGTGGCAAAGCTGGATGAGGCAAAGAATTCAGAGAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29556960 44 + 172585720 GGGCATGTAGCAAAGCTGGAAGAAGCGAAGAATTCAGAGAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29218103 44 - 170955103 GGGCATGTAGCAAAGCTGGAAGAAGCGAAGAATTCAGAGAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2226092 44 -   2996164 GGGCATGTAGCAAAGCTGGAAGAAGCGAAGAATTCAGAGAAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       13046 44 +    766320 GGGCACGTGGCAAAGCTGGAAGAAGCAAAGAATTCAGAGAAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28521487 44 -  71996105 CGGCACATGGCAAAGCTGGAAGACGCGAAGAATTCAGAGAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2235046 44 +   2316924 GGGCATGTGGCAAAGCTGGAAGAAGTGAAGAATTCAGAGAAAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2101652 44 -   3067355 CGGCACATGGCAAAGCTGGAAGAAGCGAAGAATTTAGAGAAAAA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1714762 44 -   2232465 ACGGATGTGGCAAAGTTGGAAGAGGCAAAGAATTCAGAGAAAGA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            296092 21 -    859332 I
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=-17423.000000
s hg38.chr6_GL000254v2_alt    375390 6 +   4827813 GGGG------TA--
s panTro5.chr6              29350016 6 + 175400573 GGGG------TA--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29595766 6 + 173848474 GGGG------TA--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5393370 6 +   6154872 GGGG------TA--
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29557004 6 + 172585720 GGGATA--------
i rheMac8.chr4             C 0 I 33
s macFas5.chr4              29218147 4 - 170955103 GGGA----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2226136 4 -   2996164 GGGA----------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       13090 6 +    766320 GGGA--TA------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28521531 4 -  71996105 GGGA----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2235090 4 +   2316924 GGGA----------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2101696 6 -   3067355 GGGA----TA----
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1714806 4 -   2232465 AAAA----------
i otoGar3.GL873742         C 0 I 13
s dasNov3.JH570037            296113 6 -    859332 GGAA--------TA
i dasNov3.JH570037         I 21 C 0
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=55796.000000
s hg38.chr6_GL000254v2_alt    375396 13 +   4827813 TTTAAATGGTGGG
s panTro5.chr6              29350022 13 + 175400573 TTTAAATGGTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29595772 13 + 173848474 TTTAAATGGTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5393376 13 +   6154872 TTTAAATGGTGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29218151 11 - 170955103 --TAAATAGTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2226140 11 -   2996164 --TAAATAGTGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       13096  9 +    766320 ----AATGGTGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28521535 11 -  71996105 --TAAATAGTGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2235094 11 +   2316924 --TAAATGGTGGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2101702  9 -   3067355 ----GATAGTGGG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1714823 13 -   2232465 TTTAAATGGTGGG
i otoGar3.GL873742         I 13 C 0
s dasNov3.JH570037            296119 13 -    859332 TTTAAATGGTGGG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e rheMac8.chr4              29557010 33 + 172585720 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=667933.000000
s hg38.chr6_GL000254v2_alt    375409 117 +   4827813 TTGCTATGCCTGACA-CAATAACTATATAACAAAAATAAGTATCA--TTTTTTTCTATGAAAGATTGAAAACTCACTGGAGAAAAAGCATCACCTAGGAGTCATAACTATTTGTAAGATA
s panTro5.chr6              29350035 117 + 175400573 TTGCTATGCCTGACA-CAATAACTATATAACAAAAATAAGTATCA--TTTTTTTCTATGAAAGATTGAAAACTCACTGGAGAAAAAGCATCACCTAGGAGTCATAACTATTTGTAAGATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29595785 117 + 173848474 TTGCTATGCCTGACA-CAATAACTATATAACAAAAATAAGTATCA--TTTTTTTCTATGAAAGATTGAAAACTCACTGGAGAAAAAGCATCACCTAGGAGTCATAACTATTTGTAAGATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5393389 117 +   6154872 TTGCTATGCCTGACA-CAATAACTATATAACAAAAATAAGTATCA--TTTTTTTCTATGAAAGATTGAAAACTCACTGGAGAAAAAGCATCACCTAGGAGTCATAACTATTTGTAAGATA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29557043 117 + 172585720 TTACTATGCCTGACA-CAATAACTATATAACAAAAGTAAGTATTA--TTTTTTTGTGTGAAAGACTGAAAACTCACTGGAGAAAAAGCATCACCTAGGAGTCATAACTATTTGTAAGATA
i rheMac8.chr4             I 33 I 1
s macFas5.chr4              29218162 117 - 170955103 TTACTATGCCTGACA-CAATAACTATATAACAAAAGTAAGTATTA--TTTTTTTTTGTGAAAGACTGAAAACTCACTGGAGAAAAAGCATCACCTAGGAGTCATAACTATTTGTAAGATA
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     2226151 117 -   2996164 TTACTATGCCTGACA-CAATAACTATATAACAAAAGTAAGTATTA--TTTTTTTTTGTGAAAGACTGAAAACTCACTGGAGAAAAAGCATCACCTAGGAGTCATAACTATTTGTAAGATA
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012002711v1       13105 117 +    766320 TTACTATGCCTGACA-CAGTAACTATATAACAAAAGTAAGTATTA--TATTTTTTTATGAAAAATTGAAAACTCACTGGAGAAAAAGCATCACCTAGGCGTCATAACTATTTGTAAGCTA
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17             28521546 117 -  71996105 TTACTATGCCTGACA-CAATAACTATATAACAAAAGTAAGTATTA--TTTTTTTCTGTGAAAGACTGAAAACTCACTGGAGAAAAAGCATCACCTAGGAGTCATAACTATTTGTAAGATA
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012104165v1     2235105 117 +   2316924 TTACTATGCCTGACA-CAATAACTATATAACAAATGTAAGTATTA--TTTTTTTCTGTGAAAGATTGAAAACTCACTGGAGAAAAAGCATCACCTAGGAGTCATAACTATTTGTAAGATA
i manLeu1.NW_012104165v1   C 0 I 6129
s colAng1.NW_012115566v1     2101711 117 -   3067355 TTACTATGCCTGACA-CAATAACTATATAACAAAAGTAAGTATTA--TTTTTTTCTATGAAAGACTGAAAACTCACTGGAGAAAAAGTATCACCTAGGAGTCATAACTATTTGTAAGATA
i colAng1.NW_012115566v1   C 0 I 1
s otoGar3.GL873742           1714836 115 -   2232465 TTACTATGCCTGTCA-CGATAACTATATAACAAAAGGAAGAGTTAATTTTTTTTCTGTGAAAGATTGAAAACTCCCTGGAGACAAACAATCACCTGAGAGTCATGACTCTGT----GATA
i otoGar3.GL873742         C 0 I 2
s dasNov3.JH570037            296132 114 -    859332 TCACTATGTCTTATAGAAATAAGTATATAATAAAAGACAGTATTT--GTCTTTCCCACAAAAGAATGGTCATACAC--AAATAAAAGAGGCAACTAAAAACCA-AACTATTGGCA-CATA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=3016963.000000
s hg38.chr6_GL000254v2_alt    375526 581 +   4827813 ---------------TATTTTATTTTTAACAAAAAAAGTAACATGAGATTCACTGGGCACAATGTATTAAATGATGAACAGCCACTTAATGA-TTCATTAAATATTCAGAACTCTCTAACTTGGAGAAT----AAA-------TATGTACTAATTATAGC-TCATG-CTCAGAATTTATATACTATCTAAATTATTGTCCTGGAGAAAAATACATCATGTAGAAACCTTCTTCAGGCCCTGTGGTTCAGCTTCTTGAACCCTGTGATAGACACACCTGCAACTCTAAGAACTACACTCAG-GTTCTCCTCCATTTTCCTGCCCC----TCCCACTTTTCCTTCCTTCTCTGTTCTCTCACTGAATTTTTATCTTCCTTTCCTTTCTGTAAAGTTTGAATC-TTTTCAAATTCAGTTGT--AG-------TCACACATCCTTTAGAAAGCATTCTATCACTGTTCT-CCCC-------------------------------AGATTTTTAGCTTAGTTCGTATCATGAATACCCATATATTGATGA------GCAAGTGTCTGTGTCT---------------TCTCTACTTGTATTCAATTTTTCAGTTTAGAAATACATTTTGAGTCCAAGTAAACAAATCACAAGATAAGATTCT-----------TATCTAATTGAAGCTAAACA
s panTro5.chr6              29350152 581 + 175400573 ---------------TATTTTATTTTTAACAAAAAAAGTAACATGAGATTCACTGGGCACAATGTATTAAATGATGAACAGCCACTTAATGA-TTCATTAAATATTCAGAACTCTCTAACTTGGAGAAT----AAA-------TATGTACTAATTATAGC-TCATG-CTCAGAATTTATATACTATCTAAATTATTGTCCTGGAGAAAAATACATCATGTAGAAACCTTCTTCAGGCCCTGTGGTTCAGCTTCTTGAACCCTGTGATAGACACACCTGCAACTCTAAGAACTACACTCAG-GTTCTCCTCCATTTTCCTGCCCC----TCCCACTTTTCCTTCCTTCTCTGTTCTCTCACTGAATTTTTATTTTCCTTTCCTTTCTGTAAAGTTTGAATC-TTTTCAAATTCAGTTAT--AG-------TCACACATCCTTTAGAAAGCATTCTATCACTGTTCT-CCCC-------------------------------AGATTTTTAGCTTAGTTCGTATCATGAATACCCATATATTGATGA------GCAAGTGTCTGTGTCT---------------TCTCTACTTGTATTCAATTTTTCAGTTTAGAAATACATTTTGAGTCCAAGTAAACAAATCAGAAGATAAGATTCT-----------TATCTAATTGAAGCTAAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29595902 580 + 173848474 ---------------TATTTTATTTTTAAC-AAAAAAGTAACATGAGATTCACTGGGCACAATGTATTAAATGATGAACAGCCACTTAATGA-TTCATTAAACATTCAGAACTCTCTAACTTGGAGAAT----AAA-------TATGTACTAATTATAGC-TCATG-CTCAGAATTTATATACTATCTCAATTATTGTCCTGGAGAAAAATACATCATGTAGAAACCTTCTTCAGGCCCTGTGGTTCAGCTTCTTGAACCCTGTGATAGACACACCTGCAACTCTAAGAACTACACTCAG-GTTCTCCTCCATTTTCCTGCCCC----TCCCACTTTTCCTTCCTTCTCTGTTCTCTCACTGAATTTTTATTTTCCTTTCCTTTCTGTAAAGTTTGAATC-TTTTCAAATTCAGTTAT--AG-------TCACACATCCTTTAGAAAGCATTCTATCACTGTTCT-CCCC-------------------------------AGATTTTTAGCTTAGTTCGTATCATGAATACCCATATATTGATGA------GCAAGTGTCTGTGTCT---------------TCTCTACTTGTATTCAATTTTTCAGTTTAGAAATACATTTTGAGTCCAAGTAAACAAATCAGAAGATAAGATTCT-----------TATCTAATTGAAGCTAAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5393506 580 +   6154872 ---------------TATTTTATTTTTAACAAAAAAAGTAACATGAGATTCACTGGGCACAATGTATTAAATGATGAACAGCCACTTAATGA-TTCATTAAATATTTAGAACTCTCTAACTTGGAGAAT----AAA-------TGTGTACTAATTATAGC-TCATG-CTCAGAATTTATATACTATCTAAATTATTGTCCTGGAGAAAAATACATCATGTAGAAACCTTCTTCAGGCCCTGTGGTTCAGCTTCTTGAACCCTGCGATAGACACACCTGCAACTCTAAGAACTACACT-AG-GTTCTCCTCCATTTTCCTGCCCC----TCCCACTTTTGCTTCCTTCTCTGTTCTCTCACTGAATTTTTATCTTCCTTTCCTTTCTGTAAAGTTTGAATC-TTTTCAAATTCAGTTAT--AG-------TCACACATCCTTTAGAAAGCATTCTATCACTGTTCT-CCCC-------------------------------AGATTTTTACCTTAGTTCGTATCATGAATACCCATATATTGATAA------GCAAGTGTCTGTGTCT---------------TCTCTACTTGTATTCAATTTTTCAGTTTAGAAATACATTTTGAGTCCAAGTAAACATATCAGAAGATAAGATTCT-----------TATCTAATTGAAGCTAAACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29557161 580 + 172585720 ---------------TATTTTATTTTTAACAAAAAAAGTAACGTGAGATTCACTGGGCGCAGTGTATTAAATGATGAACAGCCACTTAATGA-TTCACTAAATATTCAGAACTCTCTAAATTGGAGAAT----AAA-------TATGTACTAATTATAGC-TCATG-CTCAGAATTTATATACTATCTAAATTATTGTCCTAGAGAAAAATACATCATGTAGAAAGCTGCTTCAGGCCGTGTGGTTCAGCTTTGTGAACCCTGTGACAGACACACCTGCAACTCTAAGACCTTCACTCAG-GCTCTTCTCCATTTTCCTGCCCCTCCCTCCCACCTTTCCTTCCTTCTCTGTTTTCTCACTGAATTTTTATCTTCCTTTCCC-----TAAAGTTTGAATC-TTTTCAAATTCAGTTAT--AG-------TCACACATCCTTTAGAAAGTATTCTATCACTGTTCT-CCCC-------------------------------AGAGTTTTAGCTGAGTTCATACAATGAATACCCATACATTGATGA------GCAAGTGTCTGTGTCT---------------TCTCTATTTGCATTCAATTTTTCAGTTTAGAAATACATTTTGAGTCCAAGTAAACAAATCAGAAGATCAGGTTCT-----------TATCTAATTGAAGCTAAACA
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              29218280 580 - 170955103 ---------------TATTTTATTTTTAACAAAAAAAGTAACGTGAGATTCACTGGGCGCAGTGTATTAAATGATGAACAGCCACTTAATGA-TTCACTAAATATTCAGAACTCTCTAAATTGGAGAAT----AAA-------TATGTACTAATTATAGC-TCATG-CTCAGAATTTATATACTATCTAAATTATTGTCCTAGAGAAAAATACATCATGTAGAAAGCTGCTTCAGGCCGTGTGGTTCAGCTTTGTGAACCCTGTGACAGACACACCTGCAACTCTAAGACCTTCACTCAG-GCTCTTCTCCATTTTCCTGCCCCTCCCTCCCACCTTTCCTTCCTTCTCTGTTTTCTCACTGAATTTTTATCTTCCTTTCCC-----TAAAGTTTGAATC-TTTTCAAATTCAGTTAT--AG-------TCACACATCCTTTAGAAAGTATTCTATCACTGTTCT-CCCC-------------------------------AGAGTTTTAGCTGAGTTCATACAATGAATACCCATACATTGATGA------GCAAGTGTCTGTGTCT---------------TCTCTATTTGCATTCAATTTTTCAGTTTAGAAATACATTTTGAGTCCAAGTAAACAAATCAGAAGATCAGGTTCT-----------TATCTAATTGAAGCTAAACA
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     2226269 580 -   2996164 ---------------TATTTTATTTTTAACAAAAAAAGTAACGTGAGATTCACTGGGCGCAGTGTATTAAATGATGAACAGCCACTTAATGA-TTCACTAAATATTCAGAGCTCTCTAAATTGGAGAAT----AAA-------TATGTACTAATTATAGC-TCATG-CTCAGAATTTATATACTATCTAAATTATTGTCCTAGAGAAAAATACATCATGTAGAAAGCTGCTTCAGGCCGTGTGGTTCAGCTTTGTGAACCCTGTGACAGACACACCTGCAACTCTAAGACCTTCACTCAG-GCTCTTCTCCATTTTCCTGCCCCTCCCTCCCACCTTTCCTTCCTTCTCTGTTTTCTCACTGAATTTTTATCTTCCTTTCCC-----TAAAGTTTGAATC-TTTTCAAATTCAGTTAT--AG-------TCACACATCCTTTAGAAAGTATTCTATCACTGTTCT-CCCC-------------------------------AGAGTTTTAGCTGAGTTCATACAATGAATACCCATACATTGATGA------GCAAGTGTCTGTGTCT---------------TCTCTATTTGCATTCAATTTTTCAGTTTAGAAATACATTTTGAGTCCAAGTAAACAAATCAGAAGATCAGGTTCT-----------TATCTAATTGAAGCTAAACA
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1       13223 563 +    766320 ---------------TATTTTATTTTTAAC-AAAAAAGTAATATGAGATTCACTGGGCGCAATGTATTAAATGATGAACAGTCACTTAATGA-TTCATTAAATATTCAGAACTCTCTAAATTGGAGAAT----AAA-------TATGTACTAATTATAGC-TCATG-CTCAGAATTTATATACTATCTAAATTATTGTCTTAGAGAAAAATGCATCATGTAGAAAGCTGCTTCAGGCCGTGTGGTTCAGCTTTGTGAACCCTGTGACAGACACACCTGCAACTCTAAGACCTTTACTCGG-GCTCTTCTCCATTttcctgcccctccttcccacctttccttccttctttGTTCTCTCAGTGAATTTTTATCTTCCTTCCCC-----TAAGATTTT-ATC-TTTTCAAATTCAGTTAT--AT-------TCACACATCCTTTAG-AAGTATTCTATCACTCTTCT-CCCC-------------------------------AGATTTTTAGCTTAGTTCATATCATGAATACCCAT--------------------TTGTTTGTGTCT---------------TCTCTATTTGTATTCAATTTTTCAGTTTAGAAATAAGTTTTGAGTCCAAGTAAACAAATCAGAAGATAAGCTTCT-----------TATCTAATTGAAGCTAAACA
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17             28521664 580 -  71996105 ---------------TATTTTATTTTTAACAAAAAATGTAGCATGAGATTCACTGGGCGCAATGTATTAAATGATGAACAGCCACTTAATGA-TTCATTAAATATTCAGAACTCTCTAAATTAGAGAAT----AAA-------TATGTACTAATTATAGC-TCATG-CTCAGAATTTATATACTATCTAAATTATTGTCCTAGAGAATAATACATCATGTAGAAAGCTTCTTCAGGCCGTGTGGTTCAGCTTTGTGAACCCTGTGACAGACACACCTGCAACTCTAAGACCTTCACTCAG-GTTCTTCTCCATTTTCCTGCCCCTCCCTCCCACCTTTCCTTCCTTCTCTGTTCTCTCACTGAAGTTTTATCTTCCTTTCCC-----TAAAGTTCGAATC-TTTTCAAATTCAGTTAT--AG-------TCACACATCCTTTAGAAAGTATTCTATCACTGTTCT-CCCC-------------------------------AGAGTTTTAGCTGAGTTCATATCATGAATATCCGTACATCGATGA------GCAATTGTCTGTGTCT---------------TCTCTATTTGTATTCAATTTTTCAGTTTAGGAATACATTTTGAGTCCAAGTAAACAAATCAGAAAATCAGATTCT-----------TATCTAATTGAAGCTAAACA
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012104165v1     2241351 582 +   2316924 ---------------TATTTTATTTTTAACAAGAAAAGTAACATGAGATTCACTGGGCACAATGTATTAAATGATGAACAGCCACTTAATGA-TTCATTAAATATTCAGAACTCTCTAAATTGGAGAAT----AAA-------TATGTACTAATTATAGT-TCATG-CTCAGAATTTATATACTATCTAAATTATTGTCCTAGAGAAAAATACATCATGTAGAAAGCTGCTTCAGGCCGTGTGGTTCAGCTTTGTGACCCCTGTGACAGACACACCTGCAACTCTAAGACCTTCACTCAG-GCTCTTCTCCATTTTCCTGCCCCTCCCTCCCACCTTTCCTTCCTTCCCTGTTTTCTCACTGAATTTTTATCTTCCTTTCCC-----TAAAGTTTGAATC-TTTTCAAATTCAGTTATACAA-------TCACACATCCTTTAGAAAGTATTCTATCACTGTTCT-CCCC-------------------------------AGAGTTTTAGCTGAGTTCATATCATGAATACCCATACATTGATGA------GCAATTGTCTGTGTCT---------------TCTCTATTTGTATTCAATTTTTCAGTTTAGAAATACATTTTGAGTCCAAGTAAACAAATCAGAAGATCAGATTCT-----------TATCTAATTGAAGCTAAACA
i manLeu1.NW_012104165v1   I 6129 C 0
s colAng1.NW_012115566v1     2101829 580 -   3067355 ---------------TATTTTATTTTTAACAAAAAACGTAACATGAGATTCACTGGGCGCAATGTATTAAATGATGAACAGCCACTTAATGA-TTCATTAAATATTCAGAACTCTTTAAATTGGAGAAT----AAA-------TATGTACTAATTATAGC-TCATG-CTCAGAATTTATATACTATCTAAATTATCGTCCTAGACAAAAATACATCATGTAGAAAGCTGCTTCAGGCCGTGTGGTTCAGCTTTGTGAACCCTGTGACAGACACACCTGCAACTCTAAGACCTTCACTCAG-GCTCTTCTCCATTTTCCTGCCCCTCCCTCCCACCTTGCCTTCCTTCTCTGTTCTCTCACTGAATTTTTATCTTTCTTTCCC-----TAAAGTTTGAATC-TTTTCAAATTCAGTTAC--AG-------TCACACATTCTTTAGAAAGTATTCTATCACTGTTCT-CCCC-------------------------------AGAGTTTTAGCTGAGTTCATATAATGAATACCCATACATTGATGA------GCAAGTGTCTGTGTCT---------------TCTCTATTTGTGTTCAATTTTTCAGTTTAGAAATACATTTTGAGTCCAAGTAAACAAATCAGAAGATAAGATTCT-----------TATCTAATTGAAGCTAAACA
i colAng1.NW_012115566v1   I 1 C 0
s otoGar3.GL873742           1714953 576 -   2232465 ---------------TACTTTATTCCTTAGCAAAAAAGAAACATAAGATTTACTAGGTGCAATATATTAAATGATGAATAGCCATTTAATGATTTCATTAAATATTCAGAATTCTCCAAA-AGGACAATAAAAAAA-------TATGTAGTAGTTATCACATTACA-CGCAGAATTTAAATACTGTCTCAGTTATTGTTCTAGAGAAAAGGAAATCATGTAGAAA-CTTCTTCAGG----------------------CCCTGTGATATATGCGCTTTCAATTCTCAGCACTACTAT-AG-GCTCGTCTCCATTTCCTCTTCCT----TCACACCTTTTCTTCTTTC----TTCTCTCACCGAATTACTATCT---TTTCCC-----TCAGATTTT-CTC-TTTTCAACTTCAGTTAC--AGGTAGCATTCATACATCCTTTAGGAAGCATTCCATCACTGCTCTCCCCC-------------------------------AGGTCTTTAGCTTTGTTCATATCATGAATA------TGTTGATGT------GGGCATGTCTGTGTGTCTTTAGTTAGTAGTATCTCTAGTCACATTTTATTTTACAGTTTAGAAAT-CAGCTTAAGTGTGAGTAAACAAATCAGAAGATGAGGTTCTTTCTTTAAGCATATGTTCCTGAAGTGAAGTA
i otoGar3.GL873742         I 2 C 0
s dasNov3.JH570037            296246 616 -    859332 TATCAATTTCTTGCCTTTATTTTTCTTTACAAAAGAATAACTATAAGATGAAATTGCTGT--TGAATTTTATGAT--ATAGCCACATATCTT-TTTCTTA-----TTAG---TTCCTAAACTGTAGAAA----AACCAAAACTTATGAAGTAATAATAAA-TTATGACCCAGAACATAAATGATGTCTCAGTTATTGTCCTAGATCAGATCAAATTGTGTGGAAACTCTTTTCAAGCCCTGTG--------------------------AAAAACTCTTAACCCCAAGTACCACAATCAGAGTTCTTCTCTTTCTTCT--CCACTGCAAAACAGCTTCTCTTCCTCTCTTGTTCCCTTCCTACGTCTTTATTTCATTCTGTT-----TATGTTTTTATTTGTCTTCAAATTTAGTTAT--AT-------TTTTACTCCCCTTTGGAAACATTCTATCACTGAATT-CCCCATTGATTTCACGTCTCTCCTTATCAGAACTAAGACATTCAGTTTTGCTCATACTGTGAATATTCCTAAATTGGTGATTGTGTGATCATGTTTGTGTTTGCTTACA--------CCTCCATTTGCTTGTTATGTTCTTGTCTAGAAATAAACT---ATCGTAGATAAATGAATTAGAATATTTTGTTCTTTCTATAATTGTATCAAATTGGAGTTGAAT-
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=36092.000000
s hg38.chr6_GL000254v2_alt    376107 9 +   4827813 TTTTTTCTT-
s panTro5.chr6              29350733 9 + 175400573 TTTTTTCTT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29596482 9 + 173848474 TTTTTTCTT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5394086 8 +   6154872 -TTTTTCTT-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29557741 9 + 172585720 TTTTTTGTT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29218860 9 - 170955103 TTTTTTGTT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2226849 9 -   2996164 TTTTTTGTT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2092847 9 -   2157725 TTTTTTGTT-
i cerAty1.NW_012001495v1   I 13981 C 0
s chlSab2.chr17             28522244 9 -  71996105 TTTTTTGTT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2241933 9 +   2316924 TTTTTTGTT-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2102409 9 -   3067355 TTTTTTGTT-
i colAng1.NW_012115566v1   C 0 I 5199
s otoGar3.GL873742           1715529 9 -   2232465 CTTTTCACA-
i otoGar3.GL873742         C 0 I 4
s dasNov3.JH570037            296862 9 -    859332 -TCTTTACCC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1417417.000000
s hg38.chr6_GL000254v2_alt    376116 267 +   4827813 TAGGTGAACATTTTGAAAT----GACTAAATTCAATA-TTTTCCAC----------ATATCTTTTCATCCATATGTAAGATTATTGTGATTGCAATGATTACGTTTTCCACAATCACATTTAAGAAAATAACCTGAAAATGCTGAAAAGAAAACTAA----------AGTTCCTTATTTATTAACAAAGAAAGATTTTGTGTTTTATGGAAATTATCTTCCTTAGCTAGGT-TAGGAATTTCCTTCAATTACCATTTACCTAGATGTCACCCTAAAATGAATG---AGAACTT--GAT
s panTro5.chr6              29350742 267 + 175400573 TAGGCGAACATTTTGAAAT----GACTAAATTCAATA-TTTTCCAC----------ATATCTTTTCATCCATATGTAAGATTATTGTGATTGCAATGATTACGTTTTCCACAATCACATTTAAGAAAATAACCTGAAAATGCTGAAAAGAAAACTAA----------AGTTCCTTATTTATTAACAAAGAAAGATTTTGTGTTTTATGGAAATTATCTTCCTTAGCTAGGT-TAGGAATTTCCTTCAATTACCATTTACCTAGATGTCACCCTAAAATGAATG---AGAACTT--GAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29596491 267 + 173848474 TAGGCGAACATTTTGAAAT----GACTAAATTCAATA-TTTTCCAC----------ATATCTTTTCATCCATATGTAAGATTATTGTGATTGCAATGATTACGTTTTCCACAATCACATTTAAGAAAATAACCTGAAAATGCTGAAAAGAAAACTAA----------AGTTCCTTATTTATTAACAAAGAAAGATTTTGTGTTTTATGGAAATTATCTTCCTTAGCTAGGT-TAGGAATTTCCTTCAATTACCATTTACCTAGATGTCACCCTAAAATGAATG---AGAACTT--GAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5394094 267 +   6154872 TAGGTGAACATTTTGAAAT----GACTAAATTCAATA-TTTTCCAC----------CTATCTTTTCATCCATATGTAAGATTATTGTGATTGCAATGATTACGTTTTCCACAATCACATTTAAGAAAATAACCTGAAAATGCTGAAAAGAAAACTAA----------AGTTCCTTATTTATTAACAAAGAAAGATTTTGTGTTTTATGGAAATTATCTTCCTTAGCTAGGT-TAGGAATTTCCTTCAATTACCATTTACCTAGATGTCACCCTAAAATGAATG---AGAACTT--GAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29557750 274 + 172585720 TAGGTGAACATTTTGAAAT-AACTACTAAATTCAATA-TTTTCAAC----------ATATCTTTCCATCCCTGTGTAAGATTATTGGGGTTACAATGATTACGTTTTCCACAATCACACTTAAGAAAATAACCTGAAAATGCTGAAAAGAAAACTAA----------AGTTCCTTGTTTATTAACAAAGAAAGATTTTGTGTTTTATGGAAATTATCTTCCTTAGCTAGTATTAGGAATTTCTTTCAATTACCGTTTACCTAGATGTCACCCTAAAATGAATGAGAAGAACTT--GAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29218869 273 - 170955103 TAGGTGAACATTTTGAAAT-AACTACTAAATTCAATA-TTTTCAAC----------ATATCTTTCCATCCCTGTGTAAGATTATTGGGGTTACAATGATTACGTTTTCCACAATCACACTTAAGAAAATAACCTGAAAATGCTGAAAAGAAAACTAA----------AGTTCCTTGTTTATTAACAAAGAAAGATTTTGTGTTTTATGGAAATTATCTTCCTTAGCTAGTA-TAGGAATTTCTTTCAATTACCGTTTACCTAGATGTCACCCTACAATGAATGAGAAGAACTT--GAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2226858 273 -   2996164 TAGGTGAACATTTTGAAAT-AACTACTAAATTCAATA-TTTTCAAC----------ATATCTTTCCATCCATGTGTAAGATTATTGGGGTTACAATGATTATGTTTTCCACAATCACACTTAAGAAAATAACCTGAAAATGCTGAAAAGAAAACTAA----------AGTTCCTTGTTTATTAACAAAGAAAGATTTTGTGTTTTATGGAAATTATCTTCCTTAGCTAGTA-TAGGAATTTCTTTCAATTACCGTTTACCTAGATGTCACCCTAAAATGAATGAGAAGAACTT--GAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2092856 270 -   2157725 TAGGTGAACATTTTGAAAT-AACGACTAAATTCAATA-TTTTCAAC----------ATATCTTTTCATCCATGTGTAAGATTATTGGGGTTACAATGATTACGTTTTCCACAATCACACTTAAGAAAATAAACTGAAAATGCTGAAAAGAAAACTAA----------AGTTCCTTGTTTATTAACAAAGAAAGATTTTGTGTTTTATGGAAATTATCTTCCTTAGCTAGTG-TAGGAATTTCTTTCATTTACCGTTTACCTAGATGTCACCCTAAAATGAATG---AGAACTT--GAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28522253 270 -  71996105 TAGGTGAACATTTTGAAAT-AACGACTAAATTCAATA-TTTTCAAC----------ATATCTTTTCACCCATGTGTAAGATTATTGGGGTTACAATGATTACGTTTTCCACAATCACACTTAAGGAAATAGCCTGAAAATGGTGAAAAGAAAACTAA----------AGTTCCTTGTTTACTAACAAAGAAAGATTTTGTGTTTTATGGAAATTATCTTCCTTAGCTAGCA-TAGGAATTTCTTTCAATTACCGTTTACCTAGATGTCACCCTAAAATGAATG---AGAACTT--GAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2241942 270 +   2316924 TAGGTGAACATTTTGAAAT-AACGACTAAATTCAATA-TTTTCAAC----------ATATCTTTTCATCCATGTGTAAGATTATTGGGGTTACAATGATTACGTTTTCCACAATCACACTTAAGAAAATAAACTGAAAATGCTGAAAAGAAAACTAA----------AGTTCCTTGTTTATTAACAAAGACAGATTTTGTGTTTTATGGAAATTATCTTCCTTAGCTAGTG-TAGGAATTTCTTTCACTTACCGTTTACCTAGATGTCACCCTAAAATGAATG---AGAACTT--GAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2107617 265 -   3067355 TAGGTGAACATTTTGAAAT-AACTACTAAATTCAATA-TTTTCAAC----------ATATCTTTCCATCCATGTGTAAGATTATTGGGGTTACAATGATTACGTTTTCCACAATCACACTTAAGAAAATAACCTGAAAATGCTGAAAAGAAAACTAA----------AGTTCCTTGTTTATTAACAAAGAAAGATTCTGTGTTTTATGGAAATGATCTTCCGTAGC------TAGGAATTTCTTTCAATTACTGTTTACCTAGATGTCACCGTAAAATGAATG---AGAACTT--GAT
i colAng1.NW_012115566v1   I 5199 C 0
s otoGar3.GL873742           1715542 265 -   2232465 GAAATCACCATTTTGAAAT-CACTACTAAATTTGATATTTTTCAGT----------ATGTCTTTTGACCCATAAGTAAGATTATTGGGATTGCGAGTATCATAATTCTTATAATCACATTAATGAAGATAAGCTGCAAATGCTGGAATGAAAACTAA----------AGTTACCTGCTTATTAACAA----AAATTATTTGCTTCATGGGAATTGTCTTCCCTAGCTAGGT-TAGGATTTTTTCCC----ACTATTTGCCTATGTGTTACCCTAAAATGATTG---AGAACTTTAAAA
i otoGar3.GL873742         I 4 C 0
s dasNov3.JH570037            296871 262 -    859332 ------AATATTAAGGTATTAATTACTATTTTCA----TGTTAAACATGAAACATAATAAACTCTCAACTATGTGTACAATTATAAAGACTGCAATTCTTCTTTTCTCTGTTACCA-------AAAAATAGCCTGAAAATGTATAAAAGGGAAGTAGATAGAGTGGTAGGTTTTTGT---------AAAAAATATTATTT-TTTCATGAAAATTTTCCCTTTTGTCTTGT--TAGGAATATCTTT-AATCTTCATTTATCCAAATGCCAACTTAGAGAGAAA----AGAACTC--AGT
i dasNov3.JH570037         C 0 I 19195
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=778754.000000
s hg38.chr6_GL000254v2_alt    376383 155 +   4827813 AGTTA-TTTTTCTATAATAAGGCAAACATCTAAATAAAATATAAAATTAAAA-------------AAT---TATTTTGTAtttttgtgactttttattatggtaaaatttcaaacttagagaagagttgcaaaaaagtagtacaaaagactaacatttacccttttaccaga
s panTro5.chr6              29351009 155 + 175400573 AGTTA-TTTTTCTATAATAAGGCAAACATCTAAATAAAATATAAAATTAAAA-------------AAT---TATTTTGTAtttttgtgactttttattatggtaaaatttcaaacttagagaagagttgcaaaaaagtagtacaaaagactaacatttacccttttaccaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29596758 155 + 173848474 AGTTA-TTTTTCTATAATAAGGCAAACATCTAAATAAAATATAAAATTAAAA-------------AAT---TATTTTGTAtttttgtgactttttattatggtaaaatttcaaacttagagaagagttgcaaaaaagtagtacaaaagactaacatttacccttttaccaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5394361 155 +   6154872 AGTTA-TTTTTCTATAATAAGGCAAACATCTGAATAAAATATAAAATTAAAA-------------AAT---TATTTTGTAtttttgtgactttttattatggtaaaatttcaaacttagagaagagttgcaaaaaagtagtacaaaagactaacatttacccttttaccaga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29558024 146 + 172585720 AGTTA-TTTTTCTATAATAAGGCAAACATCTGAATAAAATATAAAATTAAAA-------------AAT---TATTTTGTATT--------tttttattat-gtaaaatttcaaacttagagaagagttgcaaaaaagtagtataaaagactaacatttaccctttaaccaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29219142 146 - 170955103 AGTTA-TTTTTCTATAATAAGGCAAACATCTGAATAAAATATAAAATTAAAA-------------AAT---TATTTTGTATT--------tttttattat-gtaaaatttcaaacttagagaagagttgcaaaaaagtagtataaaagactaacatttaccctttaaccaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2227131 146 -   2996164 AGTTA-TTTTTCTATAATAAGGCAAACATCTGAATAAAATATAAAATTAAAA-------------AAT---TATTTTGTATT--------tttttattat-gtaaaatttcaaacttagagaagagttgcaaaaaagtagtgtaaaagactaacatttaccctttaaccaga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2093126 147 -   2157725 AGTTA-TTTTTCTATAATAAGGCAAACATCTGAATAAAATATAAAGTTAAAA-------------AAT---TATTTTGTATT--------tttttattatggtaaaatttcaaacttagagaagagttgcaaaaaagtagtataaaagactaacatttaccctttaaccaga
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28522523 147 -  71996105 AGTTA-TTTTTCTATAATAAGGCAAACATCTGAATAAAATATAAAGTTAAAA-------------AAT---TATTTTGTATT--------tttttattatggtaaaatttcaaacttagagaagagttgcaaaaaagtagtataaaagactaacatttaccctttaaccaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2242212 147 +   2316924 AGTTA-TTTTTCTATAATAAGGCAAACATCGGAATAAAATATAAAGTTAAAA-------------AAT---TATTTTGTATT--------tttttattatggtaaaatttcaaacttagagaagagttgcaaaaaagtagtataaaagactaatatttaccctttaaccaga
i manLeu1.NW_012104165v1   C 0 T 6084
s colAng1.NW_012115566v1     2107882 147 -   3067355 AGTTA-TTTTTCTATAATAAGGCAAACATCTGAATAAAATATAAAATTAAAA-------------AAT---TAttttgtatt--------tttttattatggtaaaatttcaaacttagagaagagttgcaaaaaagtagtataaaagactaacatttaccctttaaccaga
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1715807 157 -   2232465 AGTTATTTTTTCTGTAATAAGGCAAATATCTGTACAAGATATAAAACTAAAATTCTCTTTTTTGTAATTTATTTTTTGTACT--------TTTTCATTATAGTAAATTCTCAAACTTATGAAACACTTGCAAAAAAGTATTATAAGGAACTAACATTTAC-------TCAGA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            297133 19195 -    859332 I
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=5005.000000
s hg38.chr6_GL000254v2_alt    376538 1 +   4827813 t
s panTro5.chr6              29351164 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29596913 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5394516 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29558170 1 + 172585720 t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29219288 1 - 170955103 t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2227277 1 -   2996164 t
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2093273 1 -   2157725 t
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28522670 1 -  71996105 t
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     2108029 1 -   3067355 t
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1715964 1 -   2232465 T
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            297133 19195 -    859332 I
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e manLeu1.NW_012104165v1     2242359 6084 +   2316924 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1038882.000000
s hg38.chr6_GL000254v2_alt    376539 235 +   4827813 tgagtattagtttacattttcccccaaagctttgttatatcatctatcaactatc-------------------------tatctat---ttatctatct------------------------atctatctatct---at------------------------ctatctatctacctatctatctc----tttttctgggctagttgagagtaagttggagatgacacgttcctttacgc-caaatactttattcagtg-------ttttttgtctaaggaaaaggatgttactttacataagtccagcacagtacccaaatca
s panTro5.chr6              29351165 258 + 175400573 tgagtattagtttacattttcccccaaagctttgttatatcatctatcaactatc-------------------------tatctatctattatctatct------------------------atctatctatct---at----ctatctatctatctatctacctatctatctacctatctatctc----tttttctggactagttgagagtaagttggagatgacacgttcctttaagc-caaatactttattcagtg-------ttttttgtctaagaaaaaggatgttactttacataagtccagcacagtacccaaatca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29596914 262 + 173848474 tgagtattagtttacattttcccccaaagctttgttatatcatctatcaactatc-------------------------tatctatctattatctatct------------------------atctatctatct---atctatctatctatctatctatctacctatctatctacctatctatctc----tttttctggactagttgagagtaagttggagatgacacgttcctttaagc-caaatactttattcagtg-------ttttttgtctaagaaaaaggatgttactttacataagtccagcacagtacccaaatca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5394517 218 +   6154872 tgagtattagtttacattttcccccaaagctttgttatatcatctatcaactatc-------------------------tatctat--------------------------------------------tatct---at------------------------ctatctatctatctatctatctc----tttttctggactagttgagagtaagttggagatgacacgttcctttacgc-caaatactttattcagtg-------ttttttgtctaagaaaaaggatgttactttacataagtccagcacagtacccaaatca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29558171 226 + 172585720 tgagtattagtttacatttccccccaaagctttgttatatcatctat---ctatc-------------------------tatctat---ctatctatct---------------------------------------at------------------------ctatctatctatctatc-atctc----tttttctggactagttgagagtaagttggagataacacgttcctttacac-caaatactttattcagtgtttttttttttttgtctaagaaaaaggatgttactttacataagtccagcacagtacccaaatca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29219289 221 - 170955103 tgagtattagtttacatttccccccaaagctttgttacatcatctat---ctatc-------------------------tatctat---ctatct-------------------------------------------at------------------------ctatctatctatctatc-atctc----tttttctggactagttgagagtaagttggagataacacgttcctttacac-caaatactttattcagtg-ttttttttttttgtctaagaaaaaggatgttactttacataagtccagcacagtacccaaatca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2227278 239 -   2996164 tgagtattagtttacatttccccccaaagctttgttatatcatctat---ctatc-------------------------tatctat---ctatctatct------------------------atctatctatctatcat------------------------ctatctatctatctatc-atctc----tttttctggactagttgagagtaagttggagataacacgttcctttacac-caaatactttattcagtg--tttttttttttgtctaagaaaaaggatgttactttacataagtccagcacagtacccaaatca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2093274 230 -   2157725 tgagtattagtttacatttccccccagagctttgttatatcatctat----tatc-------------------------tatctat---ctatctatct------------------------atctatctatct---at------------------------ctatctatctatctatc-atctc-----ttttctggactagttgagagtaaattgtagatgacaccttcctttacac-caaatactttattcagtg------tttttttgtctaagaaaaaggatggtactttacataagtccagcacagtacccaaatca
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28522671 231 -  71996105 tgagtattagtttacatttccccccaaagctttgttatatcatctat----tatc-------------------------tatctat---ctatctatct------------------------atctatctatct---at------------------------ctatctatctatctatc-atctc----tttttctggactagttgagagtaagttgtagatgataccttcctttacac-caaatactttattcagtg------tttttttgtctaagaaaaaggatggtactttacataagtccagcacagtacccaaatca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2236275 226 +   2316924 TGAGTATTAGTTTACATTTCCCCCCAGAGCTTTGTTAtatcatctat---------------------------------tatctat---ctatctatct------------------------atctatctatct---at------------------------ctatctatctatctatc-atctC-----ttttctggactagttgagagtaagttgtagatgacaccttcctttacac-caaatactttattcagtg------tttttttgtctaagaaaaaggatggtactttacataagtccagcacagtacccaaatca
i manLeu1.NW_012104165v1   T 6084 I 71383
s colAng1.NW_012115566v1     2108030 255 -   3067355 tgagtattagtttacatttccccctaaagctttgttatatcatctat----catc-------------------------tatctat---ccatctatgtatgtatgtatgtatgtatgtatgtatgtatgtatct---at------------------------ctatctatctatctatc-atctc----tttttctggactagttgagagtaagtttgagatgacacgttcctttacac-caaatactttattcagtg------tttttttgtctaagaaaaaggatgttactttacataagtccagcacagtacccaaatca
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1715965 245 -   2232465 -------TATTTTCAATCTAAT----AAGCTCTGGtctatcatctat---ctatctttgcatatatttttctatgtctcttatctgt---ctgtttgtct------------------------gtctatctatct---at------------------------ctatctatgtatctatc-atctCTCTCtttttctgggctatttgaaggtaagttggagaagctatgttcctttactcttgaatat----gtcagtg-------tttcttgtctaagaacaagcatgtcattttacttaatctctgta-gttatcaaaatca
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            297133 19195 -    859332 I
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=49693.000000
s hg38.chr6_GL000254v2_alt    376774 39 +   4827813 gcaaacttaatatgggcacaatattattatctaatccat
s panTro5.chr6              29351423 39 + 175400573 gcaaacttaatatgggcacaatattattatctaatccat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29597176 39 + 173848474 gcaaacttaatatgggcacaatattattatctaatccat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5394735 39 +   6154872 gcaaacttaatatgggcacaatattattatctaatccat
i gorGor5.CYUI01015250v1   C 0 C 0
s manLeu1.NW_012104165v1     2307884 39 +   2316924 gcaaatttaatgtgggtacaatattattatctaatccat
i manLeu1.NW_012104165v1   I 71383 T 71422
s otoGar3.GL873742           1716210 39 -   2232465 gaaaatttaatatgggcacaatggtattatctaatccat
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            297133 19195 -    859332 I
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e colAng1.NW_012115566v1     2108285  0 -   3067355 C
e chlSab2.chr17             28522902  0 -  71996105 C
e cerAty1.NW_012001495v1     2093504  0 -   2157725 C
e macNem1.NW_012011356v1     2227517  0 -   2996164 C
e macFas5.chr4              29219510  0 - 170955103 C
e rheMac8.chr4              29558397  0 + 172585720 C
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1469281.000000
s hg38.chr6_GL000254v2_alt    376813 282 +   4827813 agtccacactgagatttcttaaattgtctcaataattttgttaatagctagtttttgaaaaaatccaggattgtacactgagaaatcacatctcactagtctcttttcatctggaccagttcctcaccctttgttt-------------ttctac--ttaaacttgatacttttctgaattgtataggcaagctatttctctcaatttgagtttttctcatgtgtcttcattattagaattagtcttcattattagaatttttaacacaaatatcactgaagtgacagcatgtcctg
s panTro5.chr6              29351462 280 + 175400573 agtccacactgagatttcttaaattgtctcaataattttgttaatagctagtttttgaaaaaatccaggattgtacactgagaaatcacatctcactagtctcttttcatctggaccagttcctcaccctttgttt-------------ttctac--ttaaacttgatac--ttctgaattgtataggcaagctatttctctcaatttgagtttttctcatgtgtcttcattattataattagtcttcattattagaatttttaacacaaatatcactgaagtgacagcatgtcctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29597215 280 + 173848474 agtccacactgagatttcttaaattgtctcaataattttgttaatagctagtttttgaaaaaatccatgattgtacactgagaaatcacatctcactagtctcttttcatctggaccagttcctcaccctttgttt-------------ttctac--ttaaacttgatac--ttctgaattgtataggcaagctatttctctcaatttgagtttttctcatgtgtcttcattattataattagtcttcattattagaatttttaacacaaatatcactgaagtgacagcatgtcctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5394774 280 +   6154872 agtccactctgagatttcttgaattgtctcaataattttgttaatagctagtttttgaaaaaatccaggattgtacactgagaaatcacatctcactagtctcttttcatctggaccagttcctcaccctttgttt-------------ttctac--ttaaacttgatac--ttctgaattgtataggcaagctacttctctcaatttgagtttttctcatgtgtcttcgttattagaattagtcttcattattagaatttttaacacaaatatcactgaagtgacagcatgtcctg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29558397 280 + 172585720 agtccaaactgagatttcttaaatcgtctcaataattttgttaacagctagtttttgaaaaaatgcaggattgtacactgagaaatcacgtctctctagtctcctttcatctggaccagttcctcaccctttgttt-------------ttctac--ttaagcttgatag--ttctgaattgtataggcaagttatttctctcaatttgagtttttctcatgtgtcttcattattagaattagtctgcattattagaatgtttaacacaaatatcactgaagagacatcatgtcctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29219510 280 - 170955103 agtccaaactgagatttcttaaatcgtctcaataattttgttaatagctagtttttgaaaaaatgcaggattgtacactgagaaatcacgtctctctagtctcctttcatctggaccagttcctcaccctttgttt-------------ttctac--ttaagcttgatag--ttctgaattgtataggcaagttatttctctcaatttgagtttttctcatgtgtcttcattattagaattagtctgcattattagaatgtttaacacaaatatcactgaagagacatcatgtcctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2227517 280 -   2996164 agtccaaactgagatttcttaaatcgtctcaataattttgttaatagctagtttttgaaaaaatgcaggattgtacactgagaaatcacgtctctctagtctcctttcatctggaccagttcctcaccctttgttt-------------ttctac--ttaagcttgatag--ttctgaattgtataggcaagttatttctctcaatttgagtttttctcatgtgtcttcatttttagaattagtctgcattattagaatgtttaacacaaatatcactgaagagacatcatgtcctg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2093504 280 -   2157725 agtccaaactgagatttcttaaatcgtctcaataattttgttaatagctagtttttgaaaaaatgcaggattgtacactgagaaatcacgtctctctagtctcctttcgtctggaccagttcctcaccctttgttt-------------ttctac--ttaagcttgatag--ttctgaattgtataggcaagttatttctctcaattagagtttttctcatgtgtcttcattattagaattagtctgcattattagaatgtttaacacaaatatcactgaagagacatcatgtcctg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28522902 280 -  71996105 agtccaaactgagatttcttaaattgtctcaataattttgttaatagctagtttttgaaaaaatgcaggattgtacactgagaaatcatgtctctctagtctcctttcatccggaccagttcctcaccctttattt-------------ttctac--ttaagcttgatag--ttctgaattgtataggcaagttatttctctcaatttgagtttttctcctgtgtcttcattattagaattagtctgcattattagaatgtttaacacaaatatcactgaagtgacatcatgtcctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2236501 280 +   2316924 agtccaaactgagatttcttaaattgtctcaataattttgttaatagctagtttttgaaaaaatgcaggattgtacactgagaaatcacatctctctagtctcctttcatctggaccagttcctcaccctttattt-------------ttctac--ttaagcttgatag--ttctgaattgtataggcaagttatttctctcaatttgagtttttctcatgtatcttcattattagaattagtctgcattattagaatgtttaacacaaatatcactgaagagacatcatgtcctg
i manLeu1.NW_012104165v1   T 71422 I 5978
s colAng1.NW_012115566v1     2108285 280 -   3067355 agtccaaactgagatttcttaagttgtctcaataattttgttaatagctagtttttgaaaaaatgcaggattgtacactgagaaatcacgtctctctagtctcctttcatccggaccagttcctcaccctttgttt-------------ttctac--ttaagcttgatag--ttctgaattgtataggcaagatatttctctcaatttgagtttttctcacgtgtctttattattagaattagtctgcattattagaatgtttaacacaaatatcactgaagtgacatcatgtcatg
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1716249 283 -   2232465 agtctatattcggatttctccaactgtctgaataattttgttaatagctacgttttaaaaga--tctggatcatacatttagagatcatatctcattgttctcctttaatctgcaccagttcttcagattttatttgtgtttgttgaaattgtgcttttgaacttgataa--ttttgaacagcaaaggcaagcaatttctgtc---ttgagtttgtttcatgtacctttattattagaactaggctgt-------gcatttttggcaggaatatcacagtggggacatcatgtcctg
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            297133 19195 -    859332 I
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=2867541.000000
s hg38.chr6_GL000254v2_alt    377095 555 +   4827813 ttcagagcatcatcacagcaggctcatgatgttggtttgtgcaaatacagttgatcttaagatcaataaaatcac-tggttatggtggtgtctga-----caggtttttctactacaaactttactgtttttcagtttgaaattaactagaaagttgtgaggagatattttagactattttag---------atatttgtacatattctgttccccatcaaatttttatcc---------------------------actagtttttgcaatcatttatgtttttcttaacaccgtcaccccttctatatttgttaattagggatctactgtaaggaatagctttatcttcaccattcatttatttattcttttactttttatatcagtatgagctttataattcttcttttgttaaattcattacta-----------------ctaatggttaaattgtcctacaattaaatgatggcaagcccttcaaactggcttttattttttattcatgtgtgctgatatttttggatcatttgtttactCGTTTTTTGAGTTTACCT---TTCTTTTTTTTCTCTCAGGTAATAGGAAATGAATGATGATGG-AAAAGTC
s panTro5.chr6              29351742 555 + 175400573 ttcagagcatcatcacagcaggctcatgatgttggtttgtgcaaatacaggtgatcttaagatcaataaaatcac-tggttatgttggtgtctga-----caggtttttctactacaaactttactgtttttcagtttgaaattaacaagaaagttgtgaggagatattttagactattttag---------atatttgtacatattctgttccccatcaaatttttatcc---------------------------actagtttttgcaatcatttatgttcttcttaacaccgtcaccccttctgtatttgttaattagggatctactgtaaggaatagctttatcttcaccattcatttatttattcttttactttttatatcagtatgagctttataattcttcttttgttaaattcattacta-----------------ctaatggttaaattgtcctacaattaaatgatggcaagcccttcaaactggcttttattttttattcatgtgtgctggtatttttggatcatttgtttactctttTTTTGAGTTTACCT---TTCTTTTTTTTCTCTCAGGTAATAGGAAATGAATGATGATGG-AAAAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29597495 555 + 173848474 ttcagagcatcatcacagcaggctcatgatgttggtttgtgcaaatacaggtgatcttaagatcaataaaatcac-tggttatggtggtgtctga-----caggtttttctactacaaactttactgtttttcagtttgaaattaacaagaaagttgtgaggagatattttagactattttag---------atatttgtacatattctgttccccatcaaatttttatcc---------------------------actagtttttgcaatcatttatgttcttcttaacaccgtcaccccttctgtatttgttaattagggatctactgtaaggaatagctttatcttcaccattcatttatttattcttttactttttatatcagtatgagctttataattcttcttttgttaaattcattacta-----------------ctaatggttaaattgtcctacaattaaatgatggcaagcccttcaaactggcttttattttttattcatgtgtgctggtatttttggatcatttgtttactctttTTTTGAGTTTACCT---TTCTTTTTTTTCTCTCAGGTAATAGGAAATGAATGATGATGG-AAAAGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5395054 555 +   6154872 ttcagagcatcatcacagcaggctcatgatgttggtttgtgcaaatacaggtgatcttaagatcaataaaatcac-tggttatggtggtgtctga-----caggtttttctactataaactttactgtttttcagtttgaaattaacaagaaagttgtgaggagatattttagactattttag---------atatttgtacatattctgttccccatcaaatttttatcc---------------------------actagtttttgcaatcatttatgtttttcttaacaccatcaccccttctatatttgttaattggggatctactgtaaggaatagctttatcttcaccattcatttatttattcttttactttttatatcagtatgagctttataattcttcttttgttaaattcattacta-----------------ctaatggttaaattgtcctacaattaaatgatgggaagcccttcaaactggcttttattttttattcgtgtgtgctgatatttttggatcatttgtttactctttTTTTGAGTTTACCT---TTCTTTTTTTTCTCTCAGGTAATAGGAAATGATTGATGATGG-AAAAGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29558677 555 + 172585720 ttcagagcatcatcacagcaggctcatgatgttgg-ttgtgcaaatacaggcgatcttaagatcaataaaaccacttggttatggtggtgtctgc-----caggtttttctactataaacttcactgtttttcagtttgaaattaacaagaaattcgtgaggagatattttagactattttag-----------atttgtacatatcctgctccccatcaaatttttatcc---------------------------actagtttttgcaatcatttatgtttttcttaagaccatcaccccttctatatttgttaattagggatctactgtacggaatagctttatcttcaccattcatgtatttattcttttagtttttatatcagtatgagctttataattcttcttttgttaaattcattacta-----------------ctaatggttaaattgtcctacaattaaatgatggcaagcccttcaaactggcttttattttttattcaagtgtgctgatgtttttggatcacttgattactc-tttTTTGAGTTTACCTGACTTTTTTTTTCTCTCTCAGGTAATAGGAAATGAATGATGATGG-AAAAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29219790 555 - 170955103 ttcagagcatcatcacagcaggctcatgatgttgg-ttgtgcaaatacaggcgatcttaagatcaataaaaccacttggttatggtggtgtctgc-----caggtttttctactataaacttcactgtttttcagtttgaaattaacaagaaattcgtgaggagatattttagactattttag-----------atttgtacatatcctgctccccatcaaatttttatcc---------------------------actagtttttgcaatcatttatgtttttcttaagaccatcaccccttctatatttgttaattagggatctactgtacggaatagctttatcttcacccttcatgtatttattcttttagtttttatatcagtatgagctttataattcttcttttgttaaattcattacta-----------------ctaatggttaaattgtcctacaattaaatgatggcaagcccttcaaactggcttttattttttattcaagtgtgctgatgtttttggatcacttgattactc-tttTTTGAGTTTACCTGACTTTTTTTTTCTCTCTCAGGTAATAGGAAATGAATGATGATGG-AAAAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2227797 560 -   2996164 ttcagagcatcatcacagcaggctcatgatgttgg-ttgtgcaaatacaggcgatcttaagatcaataaaaccacttggttatggtggtgtctgccatcacaggtttttctactataaacttcactgtttttcagtttgaaattaacaagaaattcgtgaggagatattttagactattttag-----------atttgtacatatcctgctccccatcaaatttttatcc---------------------------actagtttttgcaatcatttatgtttttcttaagaccatcaccccttctatatttgttaattagggatctactgtacggaatagctttatcttcaccattcatgtatttattcttttagtttttatatcagtatgagctttataattcttcttttgttaaattcattacta-----------------ctaatggttaaattgtcctacaattaaatgacggcaagcccttcaaactggcttttattttttattcaagtgtgctgatgtttttggatcacttgattactc-tttTTTGAGTTTACCTGACTTTTTTTTTCTCTCTCGGGTAATAGGAAATGAATGATGATGG-AAAAGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2093784 555 -   2157725 ttcagagcatcatcacagcaggctcatgatgttgg-ttgtgcaaatacaggcgatcttaagatcaataaaaccacttggttatggtggtgtctgc-----caggtttttctactataaacttcactgtttttcagtttgaaattaacaagaaatttgtgaggagatattttagactattttag-----------atttgtacatatcctgctccccatcaaatttttatcc---------------------------actagtttttgcaatcatttatgtttttcttaagaccatcaccccttctatatttgttaattagggatctactatacggaatagctttatcttcaccattcatgtatttattcttttagtttttatatcagtatgagctttataattcttcttttgttaaattcattacta-----------------ctaatggttaaattgtcctacagttaaatgatggcaagcccttcaaactggcttttattttttattcaagtgtgctgatgtttttggatcacttgtttactc-tttTTTGAGTTTACCTGACTTTTTTTTTCTCTCTCGGGTAATAGGAAATGAATGATGATGG-AAAAGTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28523182 555 -  71996105 ttcagagcatcatcacagcaggctcatgatgttgg-ttgtgcaaatacaggcgatcttaagatcagtaaaaccacctggttatggtggtgtctgc-----caggtttttctactatgaacttcactgtttttcagtttgaaattaacaagaaatttgcgaggagatattttagactattttag-----------atttgtacatatcctgttccccagcaaatttttatcc---------------------------actagtttttgcaatcatttatgtttttcttaagaccatcaccctttctatatttgttaattagggatctactgtacggaatagctttatcttcaccattcatgtatttattcttttagtttttatatcagtatgagctttataattcttcttttgttaaattcattacta-----------------ctaatggttaaattgtcctacaattaaatgatggcaagcccttcaaactggcttttattttttattcaagtgtgctgatgtttttggatcatttgtttactc-tttTTTGAGTTTACCTGCCTTTTTTTTTTTCTCTCAGGTAATAGGAAATGAATGATGATGG-AAAAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2242759 555 +   2316924 Ttcagagcatcatcacagcaggctcatgatgttgg-ttgtgcaaatacaggcgatcttaagatcaataaaaccacttggttatggtggtgtctgc-----caggtttttctactataaacttcactgtttttcagtttgaaattaacaagaaatttgtgaggagatattttagactattttag-----------atttgtacatatcctgctccccatcaaatttttatcc---------------------------actagcttttgcaatcatttatgtttttcttaagaccatcaccccttctatatttgttaattagggatctactatacggaatagctttatcttcacaattcatgtatttattcttttagtttttgtatcagtatgagctttataattcttcttttgttaaattcattacta-----------------ctaatggttaaattgtcctacagttaaatgatggcaagcccttcaaactggcttttattttttattcaagcgtgctgatgtttttggatcacttgtttactc-tttTTTGAGTTTACCTGACTTTTTTTTTCTCTCTCGGGTAATAGGAAATGAATGATGATGG-AAAAGTC
i manLeu1.NW_012104165v1   I 5978 C 0
s colAng1.NW_012115566v1     2108565 564 -   3067355 ttcagagcatcatcacagcaggttcatgatgttgg-ttgtgcaaatacaggcgatcttaagatcaataaaaccacttggttatggtggtgtctgc-----caggtttttctactataaatttcactgtttttcagtttgaaattaacaagaaatttgtgaggagatattttagactattttagatattttagatatttgtacatatcctgttccccatcaaatttttatcc---------------------------actag-ttttgcaatcatttatgtttttcttaacaccatcaccccttctatatttgttaattagggatctactgtagggaatagctttatcttccccattcatgtatttattcttttgctttttatatcaatatgagctttataattcttcttttgttaaattcattacta-----------------ctaatggttaaattgtcctacaattaaatgatggcaagcccttcaaactggcttttattttttattcaagtgtgctgatgtttttggatcacatgtttactc-tttTTTGAGTTTACCTGACTTTTTTTTT-TCTCTCAGGTAATAGGAAATGAATGATGATGG-AAAAGTC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1716532 571 -   2232465 ttcagagcatcgtgttagcaggcatataatgtttgtttgtcca-------gtgatgatgacattaat-----catgcagttatgatggtgtcctc-----tagattcttttactgtaaagtttagtctttctcactttgtaattaactagtgattagtgaagagatacttgagactatgaaaa--------------------tattctgttcctcatcaaatttccatcctcctttttccctgctgaatttttctttactagtttttacatccatttatgtttttc-taactctctaatcccctctatatttattaattaggaatctactgtaagaaatagattcatcttcgccattc----atttattattttattttttacatgaatatgagttttaagatttttattttgttcaattcattactatgtggtatcagtttttctgaatgatcaaattgccctgtgaatgaataattgtagacccttcaatctggtttttggtgtttttttatttgctctaagattcttggaacattatctcatat-tttttTGAGTTTACATG----TTTTATTTCCCCTCAGATACCAGGAAATGAATGATGATGGAAAAAGTC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            297133 19195 -    859332 I
e canFam3.chr35             26138836 1270 +  26524999 T
e calJac3.chr4             171584755 3281 - 171630274 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1030294.000000
s hg38.chr6_GL000254v2_alt    377650 154 +   4827813 AATGCTAGCTCTGAGGGGTACTTTATTTTAGTTGGATTTTCTAATTGGCCTCATCTGGAAGTAGTTATCTTTGTGGTTGTCTTGATCTTCTACTTGATGACACTGATAGGAAACCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTGC
s panTro5.chr6              29352297 154 + 175400573 AATGCTAGCTCTGAGGGGTACTTTGTTTTAGTTGGATTTTCTAACTGGCCTCATCTGGAAGTAGTTATCTTTGTGGTTGTCTTGATCTTCTACTTGATGACACTGATAGGAAACCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29598050 154 + 173848474 AATGCTAGCTCTGAGGGGTACTTTGTTTTAGTTGGATTTTCTAACTGGCCTCATCTGGAAGTAGTTATCTTTGTGGTTGTCTTGATCTTCTACTTGATGACACTGATAGGAAACCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5395609 153 +   6154872 AATGCTAGCTCTGAGGGGTACTTTATTTTAGTTGGATTTTCTAATTGGCCTCATCTGGAAGTAGTTATCTTTGTGGTTGTCTTGATC-TCTACTTGATGACACTGACAGGAAACCTGTTCATCATCATCCTGTCATACGTGGACTCCCATCTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29559232 154 + 172585720 AATGCTAGCTCTGAGGGGTACTTTATTTTAGTTGGATTTTCTAACTGGCCTCATCTAGAAGTAGTTCTCTTCGTGGTTGTCTTGATCTTCTACTTGATGACACTGATAGGAAATCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29220345 154 - 170955103 AATGCTAGCTCTGAGGGGTACTTTATTTTAGTTGGATTTTCTAACTGGCCTCATCTAGAAGTAGTTCTCTTCGTGGTTGTCTTGATCTTCTACTTGATGACACTGATAGGAAATCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2228357 154 -   2996164 AATGCTAGCTCTGAGGGGTACTTTATTTTAGTTGGATTTTCTAACTGGCCTCATCTAGAAGTAGTTCTCTTCGTGGTTGTCTTGATCTTCTACTTGATGACACTGATAGGAAATCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2094339 154 -   2157725 AATGCTAGCTCTGAGGGGTACTTTATTTTAGTTGGATTTTCTAACTGGCCTCATCTAGAAGTAGTTCTCTTCGTGGTTGTCTTGATCTTCTACTTGATGACACTGATAGGAAATCTGTTCATCATTATCCTGTCATACCTGGACTCCCATCTCC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28523737 154 -  71996105 AATGCTAGCTCTGAGGGGTACTTTATTTTAGTTGGATTTTCTAACTGGCCTCATCTGGAAGTAGTTCTCTTCGTGGTTGTCTTGATCTTCTACTTGATGACACTGGTAGGAAACCTGTTCATCATTATCCTGTCATACCTGGACTCCCATCTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2243314 154 +   2316924 AATGCTAGCTCTGAGGGGTACTTTATTTTAGTTGGATTTTCTAACTGGCCTCATCTAGAAGTAGTTCTCTTCGTGGTTGTCTTGATCTTCTACTTGATGACACTGATAGGAAATCTGTTCATCATTATCCTGTCATACCTGGACTCCCATCTCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2109129 154 -   3067355 AATGCTAGCTCTGAGGGGTACTTTATTTTAGTTGGATTTTCTAACTGGCCTCATCTGGAAGTAGTTCTCTTCGTGGTTGTCTTGATCTTCTACTTGATGACACTGATAGGAAACCTGTTCATCATCATCCTGTCATACCTGGACTCCCAACTCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171588036 154 - 171630274 AATGCAAGTTCTGTAGACTTCTTTACTCTACTTGGATTTTCTAATTGGCCTCATCTGGAAGCAGTTCTCTTTGTGGTTATCTTGATCTTCTACTTGATGACACTGATAGGAAACCTGTTCATCACCATCCTGTCATACCTGGACTCCCATCTCC
i calJac3.chr4             I 3281 C 0
s otoGar3.GL873742           1717103 154 -   2232465 AATGCTAGTTCTGAGACCTACATTATTCTACTGGGTTTTTCTAATTGGCCTCATCTGGAAGTAGTTCTCTTTGTGGTGATCTTGATATTCTACTTGATGACGCTGATAGGCAACCTGTTCATCATCATCCTGTCATACGTGGACTCCCATCTCC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            297133 19195 -    859332 I
e canFam3.chr35             26138836 1270 +  26524999 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=4632484.000000
s hg38.chr6_GL000254v2_alt    377804 598 +   4827813 ACACACCAATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTCAATCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGCATGATTCAACTTTACTTTGTTCTCGCACTGGGAACCACAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCACCTGCTGGCTGTGGCTTCTTGGGTAAGTGGTT--TTACCAACTCAGCACTTCATTCCTCCTTCACCTTCTGGGTACCTCTGTGTGGACACCGCCAAGTAGATCACTTTTTCTGTGAAGTTCCAGCACTTCTGCGATTATCGTGTGTTGATACCCATGTCAATGAGCTGACCCTCATGATCACAAGCTCCATATTTGTTCTCATACCTCTCATCCTCATTCTCACTTCTTATGGTGCCATCGTCCAAGCTGTACTGAGGATGCAGTCAACCACTGGGCTTCAGAAAGTGTTTGGAACATGTGGAGCTCATCTTATGGCTGTATCTCTCTTTTT-CATTCCGGC
s panTro5.chr6              29352451 598 + 175400573 ACACACCAATGTACTTCTTCCTTTCGAACCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTCAATCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGCATGATTCAACTTTACTTTGTTCTCGCACTGGGAACCACAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCACCTGCTGGCTGTGGCTTCTTGGGTAAGTGGTT--TTACCAACTCAGCACTTCATTCCTCCTTCACCTTCTGGGTACCTCTGTGTGGACACCGCCAAGTAGATCACTTTTTCTGTGAAGTTCCAGCACTTCTGCGATTATCGTGTGTTGATACCCATGCCAATGAGCTGACCCTCATGATCACAAGCTCCATATTTGTTCTCATACCTCTCATCCTCATTCTCACTTCTTATGGTGCCATCGTCCGAGCTGTACTGAGGATGCAGTCAACCACTGGGCTTCAGAAAGTGTTTGGAACATGTGGAGCTCATCTTATGGCTGTATCTCTCTTTTT-CATTCCGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29598204 598 + 173848474 ACACTCCTATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTGAATCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGCATGATTCAACTTTACTTTGTTCTCGCACTGGGAACCACAGAGTGTGTCCTACTGGTGGTGATGTCCTACGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCACCTGCTGGCTATGGCTTCTTGGGTAAGTGGTT--TTACCAACTCAGCACTTCATTCCTCCTTCACCTTCTGGGTACCTCTGTGTGGACACCGCCAAGTAGATCACTTTTTCTGTGAAGTTCCAGCACTTCTGCGATTATCGTGTGTTGATACCCATGCCAATGAGCTGACCCTCATGATCACAAGCTCCATATTTGTTCTCATACCTCTCATCCTCATTCTCACTTCTTATGGTGCCATCGTCCGAGCTGTACTGAGGATGCAGTCAACCACTGGGCTTCAGAAAGTGTTTGGAACATGTGGAGCTCATCTTATGGCTGTATCTCTCTTTTT-CATTCCGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5395762 598 +   6154872 ACACACCAATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTGAATCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTCGCACTGGGAACCACAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCACCTGCTGGCTGTGGCTTCTTGGGTAAGTGGTT--TTACCAACTCAGCACTTCATTCCTCCTTCACCTTCTGGGTACCTCTGTGTGGACACCACCAAGTAGATCACTTTTTCTGTGAAGTTCCAGCACTTCTGCGATTATCGTGTGTTGATACCCATGCCAATGAGCTGACCCTCATGGTCACAAGCTCCATATTTGTTCTCATACCTCTCATCCTCATTCTCACTTCTTATGGTGCCATCATCCGAGCTGTACTGAGGATGCAGTCAACCACTGGGCTTCAGAAAGTGTTTGGAAGATGTGGAGCTCATCTTATGGCTGTATCTCTCTTTTT-CATTCCGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29559386 598 + 172585720 ACACTCCCATGTACTTTTTCCTTTTAAACCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTTAATCTCTGGGGCCCGGAAAAAACCATCTCTTATGCTGGTTGCATGATTCAACTTTACTTTGTTCTTGCACTGGGAACCACAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTACGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCATCCTCGTTTCTGCCACCTGCTGGCTGTGGCTTCTTGGGTAAGCGGTT--TTACCAACTCAGCACTTCATTCCTCCTTCACCTTCTGGATACCCCTGTGTGGACACCACCAAGTAGATCACTTTTTCTGTGAAGTTCCAGCACTTCTGCGATTATCGTGTGTTGATACCCATGTCAATGAGCTGACCCTCATGATCACAAGCTCCGTTTTTGTTCTCATACCTCTCATCCTCATTCTCACTTCTTATGGTGCCATCGTCCAGGCTGTACTGAGGATGCAATCAACCACTGGGCTTCAGAGAGTGTTTGGAACATGTGGAGCCCACCTTATGGTTGTATCTCTCTTTTT-CATTCCGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29220499 598 - 170955103 ACACTCCCATGTACTTTTTCCTTTTAAACCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTTAATCTCTGGGGCCCGGAAAAAACCATCTCTTATGCTGGTTGCATGATTCAACTTTACTTTGTTCTTGCACTGGGAACCACAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTACGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCATCCTCGTTTCTGCCACCTGCTGGCTGTGGCTTCTTGGGTAAGCGGTT--TTACCAACTCAGCACTTCATTCCTCCTTCACCTTCTGGATACCCCTGTGTGGACACCACCAAGTAGATCACTTTTTCTGTGAAGTTCCAGCACTTCTGCGATTATCGTGTGTTGATACCCATGTCAATGAGCTGACCCTCATGATCACAAGCTCCGTTTTTGTTCTCATACCTCTCATCCTCATTCTCACTTCTTATGGTGCCATCGTCCAGGCTGTACTGAGGATGCAATCAACCACTGGGCTTCAGAGAGTGTTTGGAACATGTGGAGCCCACCTTATGGTTGTATCTCTCTTTTT-CATTCCGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2228511 598 -   2996164 ACACTCCCATGTACTTTTTCCTTTTAAACCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTTAATCTCTGGGGCCCGGAAAAAACCATCTCTTATGCTGGTTGCATGATTCAACTTTACTTTGTTCTTGCACTGGGAACCACAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTACGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCATCCTCGTTTCTGCCACCTGCTGGCTGTGGCTTCTTGGGTAAGCGGTT--TTACCAACTCAGCACTTCATTCCTCCTTCACCTTCTGGATACCCCTGTGTGGACACCACCAAGTAGATCACTTTTTCTGTGAAGTTCCAGCACTTCTGCGATTATCGTGTGTTGATACCCATGTCAATGAGCTGACCCTCATGATCACAAGCTCCGTTTTTGTTCTCATACCTCTCATCCTCATTCTCACTTCTTATGGTGCCATCGTCCAGGCTGTACTGAGGATGCAATCAACCACTGGGCTTCAGAGAGTGTTTGGAACATGTGGAGCCCACCTTATGGTTGTATCTCTCTTTTT-CATTCCGGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2094493 598 -   2157725 ACACTCCCATGTACTTTTTCCTTTTAAACCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTCAATCTCTGGGGCCCGGAAAAAACCATCTCTTATGCTGGTTGCATGATTCAACTTTACTTTGTTCTTGCACTGGGAACCACAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTACGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCATCCTCGTTTCTGCTACCTGCTGGCTGTGGCTTCTTGGGTAAGTGGTT--TTACCAACTCAGCACTTCATTCCTCCTTCACCTTCTGGATACCCCTGTGTGGACACCACCAAGTAGATCACTTTTTCTGTGAAGTTCCAGCACTTCTGCGATTATCGTGTGTTGATACCCACGCCAATGAGCTGACCCTCATGATCACAAGCTCCGTTTTTGTTCTCATACCTCTCATCCTCATTCTCACTTCTTATGGTGCCATTGTCCAGGCTGTACTGAGGATGCAATCAACCACTGGGCTTCAGAGAGTGTTTGGAACATGTGGAGCCCACCTTATGGTTGTATCTCTCTTTTT-CATTCCGGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28523891 598 -  71996105 ACACTCCCATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTTAATCTCTGGGGCCCGGAAAAAACCATCTCTTATGCTGGTTGCGTGATTCAACTTTACTTTGTTCTTGCACTGGGAACCACAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCTACCTGCTGGCTGTGGCTTCTTGGGTAAGTGGTT--TTACCAACTCAGCACTTCATTCGTCCTTCACCTTCTGGATACCCCTGTGTGGACACCACCAAGTAGATCACTTTTTCTGTGAAGTTCCAGCACTTCTGCGATTATCGTGTGTTGATACCCATGCCAATGAGCTGACCCTCATGATCACAAGCTCCGTTTTTGTTCTCATACCTCTTGTCCTCATTCTCACTTCTTATGGTGCCATTGTCCAGGCTGTACTGAGGATGCAATCAACCACTGGGCTTCAGAGAGTGTTTGGAACATGTGGAGCCCACCTTATGGTTGTATCTCTCTTTTT-CATTCCGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2243468 598 +   2316924 ACACTCCCATGTACTTTTTCCTTTTAAACCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTCAATCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTTGCACTGGGAACCACAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTACGTAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCATCCTCGTTTCTGCTACCTGCTGGCTGTGGCTTCTTGGGTAAGTGGTT--TTACCAACTCAGCACTTCATTCCTCCTTCACCTTCTGGATACCCCTGTGTGGACACCACCAAGTAGATCACTTTTTCTGTGAAGTTCCAGCACTTCTGCGATTATCGTGTGTTGATACCCATGCCAATGAGCTGACCCTCATGATCACAAGCTCCGTTTTTGTTCTCATACCTCTCATCCTCATTCTCACTTCTTATGGTGCCATTGTCCAGGCTGTACTGAGGATGCAATCAACCACTGGGCTTCAGAGAGTGTTTGGAACATGTGGAGCCCACCTTATGGTTGTATCTCTCTTTTT-CATTCCGGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2109283 598 -   3067355 ACACTCCCATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTTAATCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGTGTGGTTCAACTTTACTTTGTTCTTGCACTGGGAACTGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGATCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCGCTTGTTGGCTGCGGCTTCTTGGGTAAGTGGTT--TTACCAACTCAGCACTTCATTCCTCCTTCACCTTCTGGATACCCCTGTGTGGACACCACCAAGTACATCACTTTTTCTGTGAAGTTCCAGCACTTCTGTGATTATTGTATGTTGATACCCATGCCAATGAGCTGACCCTCATGATCACAAGCTCCGTTTTTGTTCTCATACCTCTCATTCTCATTCTCACTTCTTATGGTGCCATCGTCCAGGCTGTACTGAGGATGCAATCAACCACTGGGCTTCAGAGAGTGTTTGGAACATGTGGAGCCCACCTTATGGTTGTATCTCTCTTTTT-CATTCCGGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171588190 591 - 171630274 ACACTCCCATGTACTTCTTCCTTTCAGACCTTTCATTTCTGGATCTGTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTCAATCTCTGGGACCCAGAAAAGACCATCTCTTATGCTGGCTGCATGATTCAACTTTACTTTGTTCTTGCACTGGGAACCACAGAGTGTGTCCTATTGGTGGTGATGTCCTATGACCATTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTTCTCATGCACCCTCATTTCTGCT---TGTTGGCTGTGGCTTCTTGGGTAAGTGGTT--TTACTACGTCAGCGCTTCAATCCTCCTTCA-CTTCTGGGTACCCCTGTGTGGACATCATCAAGTGGGTCAC---TTCTGTGAAGTTGCAGCACTTCTGTGATTATCATGTGTTGATACCCATGCAAATGAGCTGACCCTCATGGTCACGAGTTCCATTTTTGTTCTCATACCTCTCATCCTCATTCTCACTTCCTATGGTGCCGTTGCCCGGGCTGTACTGAGGTTGCAGTCAACTACTGGGCTTCAGAACGTGTTTAGGACATGTGGAGCCCATCTTAGGGTTGTATCTCTCTTTTT-CATTCCGGC
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1717257 598 -   2232465 ACACTCCCATGTACTTCTTCCTCTCAAACCTCTCTTTTCTGGACCTCTGCTACACCACCAGCTCTATCCCTCAATTGCTGGTCAACCTCTGGGGCCCTGACAAAACCATCTCTTATGCTGGTTGCATGATTCAACTTTACTTTGTCCTGGCGCTGGGAACCACAGAGTGTGTCCTCCTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTATGTAGACCTTTGCATTACACTGCCCTCATGCACCCTCGTGTCTGCCACCTGTTGGCTGTGGCTTCTTGGGTAAGTGGTT--TTACTGACTCAGCACTTCATACCTTCTTCACCTTCTGGGTACCCCTGTGTGGACATCGCCAAGTGGATCACTTCTTCTGTGAAGTTCCTGCATTGCTGCAACTATCCTGTGTTGATACCCATGCTAATGAGCTGACCCTCATGGTGATGAGCTCCATTTTTGTTCTCATACCTCTCATCCTCATTCTCACTTCCTATGGTGCCATTGCCCGGACTGTACTAAAAATGAAATCAACCACTGGCCTTCAGAAAGTGTTTGCCACCTGTGGAGCCCATCTTATGGTTGTCTCTCTTTTTTT-CATTCCAGC
i otoGar3.GL873742         C 0 I 5767
s canFam3.chr35             26137566 601 +  26524999 ACACTCCTATGTACTTCTTCCTCGCAAACATCTCTTTTCTGGATCTCTGCTACACCACCATCTTCATCCCTCAGTTGCTGATCAACCTCTGGGGCCCAAAAAAGACCATCTCTTACACTGGTTGCATGATTCAACTTTACTTTGTCTTTGCCCTGGGAACCACAGAGTGCGTCCTCCCAGTGGTGATGTCCTATGACTGTTATGCAGCTGTCTGTAGACCCCTGCATTATGCTGTCCTCATGAACCCTGATTTCTGCCACATATTGGCTGTGGCTTCCTGAGTCAGTTGTTGGTAAACAACTCTGCATTTCATTCTTCCTTTACTTTCTGGGTACCCCTATGTGGACATAACCAAGTAGACCATTTCTTCTGTGAAGTTCCAGCACTGCTGCAATTATCATGTGTTGATACCCATGCAGATGAGCTTACCCTCCTGATCACAAGCTGCATTTTTGTTCTCATACAACTCATCCTCATTCTCAGCTCATATGGTGCCATTGCTCAGGCTGTACTGAGGATGCAGTCAACAACCAGACTTCAGAAGGTCTTTGGAATATGTGAAGCCCATCTTATGGTTGTCTCCCTCTTTTTAAACTCCAGC
i canFam3.chr35            T 1270 C 0
e dasNov3.JH570037            297133 19195 -    859332 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=7800.000000
s hg38.chr6_GL000254v2_alt    378402 1 +   4827813 C
s panTro5.chr6              29353049 1 + 175400573 C
i panTro5.chr6             C 0 I 20417
s panPan2.chr6              29598802 1 + 173848474 C
i panPan2.chr6             C 0 I 20373
s gorGor5.CYUI01015250v1     5396360 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 I 19611
s rheMac8.chr4              29559984 1 + 172585720 C
i rheMac8.chr4             C 0 I 14489
s macFas5.chr4              29221097 1 - 170955103 C
i macFas5.chr4             C 0 I 14612
s macNem1.NW_012011356v1     2229109 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 I 13296
s cerAty1.NW_012001495v1     2095091 1 -   2157725 C
i cerAty1.NW_012001495v1   C 0 I 24498
s chlSab2.chr17             28524489 1 -  71996105 C
i chlSab2.chr17            C 0 I 16968
s manLeu1.NW_012104165v1     2244066 1 +   2316924 C
i manLeu1.NW_012104165v1   C 0 I 19762
s colAng1.NW_012115566v1     2109881 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 I 65471
s calJac3.chr4             171588781 1 - 171630274 C
i calJac3.chr4             C 0 T 5266
s canFam3.chr35             26138167 1 +  26524999 C
i canFam3.chr35            C 0 T 1234
e dasNov3.JH570037            297133 19195 -    859332 I
e otoGar3.GL873742           1717855 5767 -   2232465 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=0.000000
s hg38.chr6_GL000254v2_alt    378403 20427 +   4827813 [encoded data, 20427 characters]
e dasNov3.JH570037            297133 19195 -    859332 I
e canFam3.chr35             26138168  1234 +  26524999 T
e otoGar3.GL873742           1717855  5767 -   2232465 I
e calJac3.chr4             171588782  5266 - 171630274 T
e colAng1.NW_012115566v1     2109882 65471 -   3067355 I
e manLeu1.NW_012104165v1     2244067 19762 +   2316924 I
e chlSab2.chr17             28524490 16968 -  71996105 I
e cerAty1.NW_012001495v1     2095092 24498 -   2157725 I
e macNem1.NW_012011356v1     2229110 13296 -   2996164 I
e macFas5.chr4              29221098 14612 - 170955103 I
e rheMac8.chr4              29559985 14489 + 172585720 I
e nomLeu3.chr1a             74388707  9496 + 122973662 T
e gorGor5.CYUI01015250v1     5396361 19611 +   6154872 I
e panPan2.chr6              29598803 20373 + 173848474 I
e panTro5.chr6              29353050 20417 + 175400573 I

a score=1500.000000
s hg38.chr6_GL000254v2_alt    398830 1 +   4827813 G
s panTro5.chr6              29373467 1 + 175400573 G
i panTro5.chr6             I 20417 C 0
s panPan2.chr6              29619176 1 + 173848474 G
i panPan2.chr6             I 20373 C 0
s gorGor5.CYUI01015250v1     5415972 1 +   6154872 G
i gorGor5.CYUI01015250v1   I 19611 C 0
s colAng1.NW_012115566v1     2175353 1 -   3067355 G
i colAng1.NW_012115566v1   I 65471 C 0
s dasNov3.JH570037            316328 1 -    859332 G
i dasNov3.JH570037         I 19195 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1717855 5767 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2244067 19762 +   2316924 I
e chlSab2.chr17             28524490 16968 -  71996105 I
e cerAty1.NW_012001495v1     2095092 24498 -   2157725 I
e macNem1.NW_012011356v1     2229110 13296 -   2996164 I
e macFas5.chr4              29221098 14612 - 170955103 I
e rheMac8.chr4              29559985 14489 + 172585720 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=2252.000000
s hg38.chr6_GL000254v2_alt    398831 2 +   4827813 GC
s panTro5.chr6              29373468 2 + 175400573 GC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29619177 2 + 173848474 GC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5415973 2 +   6154872 GC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29235710 2 - 170955103 GT
i macFas5.chr4             I 14612 C 0
s colAng1.NW_012115566v1     2175354 2 -   3067355 GC
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            316329 2 -    859332 GA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1717855 5767 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2244067 19762 +   2316924 I
e chlSab2.chr17             28524490 16968 -  71996105 I
e cerAty1.NW_012001495v1     2095092 24498 -   2157725 I
e macNem1.NW_012011356v1     2229110 13296 -   2996164 I
e rheMac8.chr4              29559985 14489 + 172585720 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=4571698.000000
s hg38.chr6_GL000254v2_alt    398833 930 +   4827813 CATTTCTTGCCAATTATGAATTTTAAAATACAGTCTTAATTATAATATGATATAATGTTCATACTAAGAATTGTGCTCATGCAAATTGAACGTATTAATCAGAAAATAATTTA---TGTTAACATATTCCTT-AGTTCATATAGAAAAGC-CACATAATACCTATATACTAACAAAGCTATTGATGTACATAG-ATGACCAGTCAAAATTACTTATTAATAGCC-TTATAATGTGACTTGTCAGATGTGCCCATTTCCCTAAGAGTCACATAGTGAATTCAGATTCAGTCATTAGTTGGTACT-CTTTCTAGC---AAAATAGCTTC-TATGGATTCAAGAAAGAAATGATTAGAGGATTTGCTGCACTTAAGAATTTGAGATCTGAGATAATGAATCCCCTGA-GA-TAGAAGAAGATGATGTCCCCATGGTGCAGTTAACTCTACTGTTTGCTCAGTGGAA--GGATATTGGAATCATAGCAAAGGGAGAAATTCCAGAAGCAAATTTTAAAGCAGTTTCTCTGCAAAAACATTTGAATCCTCTCTATTGCCCACTGAGCCC----TGCCTCCTCACTATCCTAATGCAGACAGCATATCACATATCACATATATTAAAACAACCTTAAGTTGGACACTTATCAGTGTTTCTTATAAATACTATTATTTTACTTTGAAGAGTTTTTCTGGGGAAAGGGGATTACAGACTCTAAGACTTAGAAGTGTCTGCAGAAACTACTGTTGTCCACTTCCCAATATTAATTCT-TGTTAAAATGTATATTATATATCATACTAA-GTATGGTATGCATAAACCCTTTATCTTAATATAACATCAT----GTTAAATTG--------TTGGATATCTTTAATGTCTCCAAAAAA-GAAATGCTAAAATTTCATTTAGATTTATCCTTTATAAATAAAA-TTTTTGATAACAATTAAT--TCTCTTTTTGCAAGT
s panTro5.chr6              29373470 929 + 175400573 CATTTCTTGCCAATTATGAATTTTAAAATACAGTCTTAATTATAATATGATATAATGTTCATACCAAGAATTGTGCTCATGCAAATTGAATGTATTAATCAGAAAATAATTTA---TGTTAACATATTCCTT-AGTTCATATAGAAAAGC-CACATAATACCTATATACTAACAAAGCTATTGATGTACATAG-ATGACCAGTCAAAATTACTTATTAATAGCC-TTATAATGTGACTTGTCAGATGTGCCCATTTGCCTAAGAGTCACTTAGTGAATTCAGATTCAGTCATTAGTTGGTACT-CTT-CTAGC---AAAATAGCTTC-TATGGATTCAAGAAAGAAATGATTAGAGGATTTGCTGCACTTAAGAATTTGCGATCTGAGATAATGAATCCCCTGA-GA-TAGAAGAAGATGATGTCCCCATGGTGCAGTTAACTCTACTGTTTGCTCAGTGGAA--GGATATTGGAATCATAGCAAGGGGAGAAATTCCAGAAGCAAATTTTAAAGCAGTTTCTCTGCAAAAACATTTGAATCCTCTCTGTTGCCCACTGAGCCC----TGCCTCCTCACTATCCTAATGCAGACAGCATATCACATATCACATATATTAAAACAACCTTAAGTTGGACACTTATCAGTGTTTCTTATAAATACTATTATTTTACTTTGAAGAGTTTTTCTGGGGAAAGGGGATTACAGACTCTAAGACTTAGAAGTGTCTGCAGAAACTACTGTTGTCCACTTCCCAATATTAATTCT-TGTTAAAATGTATATTATATATCATACTAA-GTATGGTATGCATAAACCCTTTATCTTAATATAACATCAT----GTTAAATTG--------TTGGATATCTTTAATGTCTCCAAAAAA-GAAATGCTAAAAATTCATTTAGATTTATCCTTTATAAATAAAA-TTTTTGATAACAATTAAT--TCTCTTTTTGCAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29619179 930 + 173848474 CATTTCTTGCCAATTATGAATTTTAAAATACAGTCTTAATTATAATATGATATAATGTTCATACCAAGAACTGTGCTCATGCAAATTGAACGTATTAATCAGAAAATAATTTA---TGTTAACATATTCCTT-AGTTCATATAGAAAAGC-CACATAATACCTATATACTAACAAAGCTATTGATGTACATAG-ATGACCAGTCAAAATTACTTATTAATAGCC-TTATAATGTGACTTGTCAGATGTGCCCATTTGCCTAAGAGTCACTTAGTGAATTCAGATTCAGTCATTAGTTGGTACT-CTTTCTAGC---AAAATGGCTTC-TATGGATTCAAGAAAGAAATGATTAGAGGATTTGCTGCACTTAAGAATTTGCGATCTGAGATAATGAATCCCCTGA-GA-TAGAAGAAGATGATGTCCCCATGGTGCAGTTAACTCTACTGTTTGCTCAGTGGAA--GGATATTGGAATCATAGCAAGGGGAGAAATTCCAGAAGCAAATTTTAAAGCAGTTTCTCTGCAAAAACATTTGAATCCTCTCTATTGCCCACTGAGCCC----TGCCTCCTCACTATCCTAATGCAGACAGCATATCACATATCACATATATTAAAACAACCTTAAGTTGGACACTTATCAGTGTTTCTTATAAATACTATTATTTTACTTTGAAGAGTTTTTCTGGGGAAAGGGGATTACAGACTCTAAGACTTAGAAGTGTCTGCAGAAACTACTGTTGTCCACTTCCCAATATTAATTCT-TGTTAAAATGTATATTATATATCATACTAA-GTATGGTATGCATAAACCCTTTATCTTAATATAACACCAT----GTTAAATTG--------TTGGATATCTTTAATGTCTCCAAAAAA-GAAATGCTAAAAATTCATTTAGATTTATCCTTTATAAATAAAA-TTTTTGATAACAATTAAT--TCTCTTTTTGCAAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5415975 929 +   6154872 CATTTCTTGCCAATTATGAATTTTAAAATACAGTCTTAATTATAATATGATATAATGTTCATACCAAGAATTGTGCTCATGCAAATTGAACGTATTAATCAGAAAACAATTTA---TGTTAACATATTCCTT-AGTTCATATAGAAAAGC-CACATAATACCTATATACTAACAAAGCTATTGATGTACATAG-ATGACCAGCCAAAATTACTTATTAATAGCC-TTATAATGTGATTTGTCAGATGTGCCCATTTGCCTAAGAGTCACTTAGTGAATTCAGATTCAGTCATTAGTTGGTACT-CTTTCTAGC---AAAATAGCTTC-TATGGATTCAAGAAAGAAATGATTAGAGGATTTGCTGCACTTAAGAATTTGCGATCTGAGATAATGAATCCCCTGA-GA-TAGAAGAAGATGATGTCCCCATGGTGCAGTTAACTCTACTGTTTGCTCAGTGGAA--GGATATTGGAATCATAGCAAGGGGAGAAATTCCAGAAGCAAATTTTAAAGCAGTTTCTCTGCAAAAACATTTGAATCCTCTCTATTGCCCACTGAGCCC----TGCCTCCTCACTATCCTAATGCAGACAGCATATCACATATCACATATATTAAAACAACCTTAAGTTGGACACTTATCAGTGTTTCTTATAAATACTATTATTTTACTTTGAAGAGTTTTTCTGGGGAAAGGGGATTACAGACTCTAAGACTTAGAAGTGTCTGCAGAAACTACTGTTGTCCACTTCCCAATATTAATTCT-TGTTAAAATGTATATTATATATCATACTAA-GTATGGTATGCATAAACCCTTTATCTTAATATAACATCGT----GTTAAATTG--------TTGGATATCTTTAATGTCTCCAAAAAA-GAAATGCTAAAAATTCATTTAGATTTATCCTTTATAAATAAAA-TTTTTGATAACAATTAAT--TCTC-TTTTGCAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29574474 923 + 172585720 CATTTCTTGCCAATTATGAATTTTAAAATACAATCTTAATTATAATATGATATAATGTTCATACCAAGAATTGTGCTCATGCAAATTGAATGTATTAATCAGAAAATAATTTA---TGTTAACATATTCATT-AGTTCATATAGAAAAGC-CACACAATACCTTTACACTAACAAAGCTGTTGATGTACATAG-ATGACCAGTCAAAATTACATATTAATAGCC-TTATAATGTGACCTGTCAGATGTGCCCATTTGCCTAACAGTCACTTAGTGAACTCAGATTCAGTCATTAGTTGGTACT-TTTTCTAGC---AAAATAGCTTC-TACGGATTCAAGAAAGAAATGATTAGAGGATTTGCTGCATTTAAGAATTTGCAATCTGAGATAACGAATCCCCTGG-GA-TGGAAGGAGGTGATGTCCCCACGGTGCAGTTAACTCTACTGTTTGCTCAGTGGGA--GGATACTGGAATCATAGCAAGATAAGAAATTCCAGAAGCAAATTTTAAAGCAGTTTCTCTGCCAAAACATTTGAATCCTCCCTATTGCCCACTGAGCCC----TGGCTTCTCACTATCCTAATGCAGACA-------ACATATCCCATATATTAAAACAACCTTAAATTGGACACTTATCAGTGTTTCTCATAAATACTATGATTTTACTTTGAAGAGTTTTTCTGGGGAAAGGGGATTACGCACTCTAAGACTTAGAAGTGTCTGCAGAAACTACTGTTGTCCACTTTCCAatattaattat-tgttaaaatgtatattatatattataCTAA-GTATGGTATGCATAAACCCTTTATCTTAATATAACATGAT----GTTAAA-TG--------TTGGATCCCTTTAATGTCTCCAAAAAT-GAAATGCTAAAAATTCATTTAGATTTATCCTTTATAAATAAAATTTTTTGATAACAATTAAT--TCTCTTTTTGCAATT
i rheMac8.chr4             I 14489 C 0
s macFas5.chr4              29235712 923 - 170955103 CATTTCTTGCCAATTATGAATTTTAAAATACAATCTTAATTATAATATGATATAATGTTCATACCAAGAATTGTGCTCATGCAAATTGAATGTATTAATCAGAAAATAATTTA---TGTTAACATATTCATT-AGTTCATATAGAAAAGC-CACACAATACCTTTACACTAACAAAGCTGTTGATGTACATAG-ATGACCAGTCAAAATTACATATTAATAGCC-TTATAATGTGACCTGTCAGATGTGCCCATTTGCCTAACAGTCACTTAGTGAACTCAGATTCAGTCATTAGTTGGTACT-TTTTCTAGC---AAAATAGCTTC-TACGGATTCAAGAAAGAAATGATTAGAGGATTTGCTGCATTTAAGAATTTGCAATCTGAGATAACGAATCCCCTGG-GA-TGGAAGGAGGTGATGTCCCCACGGTGCAGTTAACTCTACTGTTTGCTCAGTGGGA--GGATACTGGAATCATAGCAAGATAAGAAATTCCAGAAGCAAATTTTAAAGCAGTTTCTCTGCCAAAACATTTGAATCCTCCCTATTGCCCACTGAGCCC----TGGCTTCTCACTATCCTAATGCAGACA-------ACATATCCCATATATTAAAACAACCTTAAATTGGACACTTATCAGTGTTTCTCATAAATACTATGATTTTACTTTGAAGAGTTTTTCTGGGGAAAGGGGATTACGCACTCTAAGACTTAGAAGTGTCTGCAGAAACTACTGTTGTCCACTTTCCAATATTAATTCT-TGTTAAAATGTATATTATATATTATACTAA-GTATGGTATGCATAAACCCTTTATCTTAATATAACATGAT----GTTAAA-TG--------TTGGATCCCTTTAATGTCTCCAAAAAT-GAAACGCTAAAAATTCATTTAGATTTATCCTTTATAAATAAAATTTTTTGATAACAATTAAT--TCTCTTTTTGCAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2242406 923 -   2996164 CATTTCTTGCCAATTATGAATTTTAAAATACAATCTTAATTATAATATGATATAATGTTCATACCAAGAATTGTGCTCATGCAAATTGAATGTATTAATCAGAAAATAATTTA---TGTTAACATATTCATT-AGTTCATATAGAAAAGC-CACACAATACCTTTACACTAACAAAGCTGTTGATGTACATAG-ATGACCAGTCAAAATTACATATTAATAGCC-TTATAATGTGACCTGTCAGATGTGCCCATTTGCCTAACAGTCACTTAGTGAACTCAGATTCAGTCATTAGTTGGTACT-TTTTCTAGC---AAAATAGCTTC-TACGGATTCAAGAAAGAAATGATTAGAGGATTTGCTGCATTTAAGAATTTGCAATCTGAGATAACGAATCCCCTGG-GA-TGGAAGGAGGTGATGTCCCCACGGTGCAGTTAACTCTACTGTTTGCTCAGTGGGA--GGATACTGGAATCATAGCAAGATAAGAAATTCCAGAAGCAAATTTTAAAGCAGTTTCTCTGCCAAAACATTTGAATCCTCCCTATTGCCCACTGAGCCC----TGGCTTCTCACTATCCTAATGCAGACA-------ACATATCCCATATATTAAAACAACCTTAAATTGGACACTTATCAGTGTTTCTCATAAATACTATGATTTTACTTTGAAGAGTTTTTCTGGGGAAAGGGGATTACGCACTCTAAGACTTAGAAGTGTCTGCAGAAACTACTGTTGTCCACTTTCCAATATTAATTCT-TGTTAAAATGTATATTATATATTATACTAA-GTATGGTATGCATAAACCCTTTATCTTAATATAACATGAT----GTTAAA-TG--------TTGGATTCCTTTAATGTCTCCAAAAAT-GAAATGCTAAAAATTCATTTAGATTTATCCTTTATAAATAAAATTTTTTGATAACAATTAAT--TCTCTTTTTGCAATT
i macNem1.NW_012011356v1   I 13296 C 0
s cerAty1.NW_012001495v1     2119590 921 -   2157725 CATTTCTTGCCAATTATGAATTTTAAAATACAATCTTAATTATAATACGATATAATGTTCATACCAAGAATTGTGCTCATGCAAGTTGAATGTATTAATCAGAAAATAATT-----TGTTAACATATTCATT-AGTTCATATAGAAAAGC-CACACAATACCTTTACACTAACAAAGCTGTTGATGTACATAG-ATGACCAGTCAAAATTACACATTAATAGCC-TTATAATGTGACCTGTCAGATGTGCCCATTTGCCTAAGAGTCACTTAGTGAACTCAGATTCAGTCATTAGTTGGTACT-CTTTCTAGC---AAAATAGCTTC-TACGGATTCAAGAAAGAAATGATTAGAGGATTTGCTGCATTTAAGAATTTGCAATCTGAGATAATGAATCCCCTGA-GA-TGGAAGGAGGTGATGTCCCCATGGTGCAGTTAACTCTACTGTTTGCTCAGTGGGA--GGATATTGGAATCATAGCAAGATAAGAAATTCCAGAAGCAAATTTTAATGTAGTTTCTCTGCCAAAACATTTGAATCCTCCCTATTGCCCACTGAGCCC----TGGCTTCTCACTATCCTAATGCAGACA-------ACATATCACATATATTAAAACAACCTTAAATTGGACACTTATCAGTATTTCTCATAAATACTATTATTTTACTTTGAAGAGCTTTTCTGGGGAAAGGGGATTACAGACTCTAAGACTTAGAAGTGTCTGCAGAAACTACTGTTGTCCGCTTTCCAATATTAATTCT-TGTTAAAATGTATATGATATATCATACTAA-GTATGGTATGCATAAACCCTTTATCTTAATATAACATGAT----GTTAAA-TG--------TTGGATCTCTTTAATGTCTCCAAAAAG-GAAATGCTAAAAATTCATTTAGATTTATCCTTTATAAATAAAATTTTTTGATAACAATTAAT--TCTCTTTTTGCAATC
i cerAty1.NW_012001495v1   I 24498 C 0
s chlSab2.chr17             28541458 923 -  71996105 CATTTCTTGCCAATTATGAATTTTAAAATACAATCTTAATTATAATATGATATAATGTTCATACCAAGAATTGTGCTCATGCAAATTGAATGTATTAATCAGAAAATAATTTA---TGTTAACATATTCATT-AGTTCATATAGAAAAGC-CACACAATACCTTTACACTAACAAAGCTGTTGATGTACATAG-ATGACCAGTCAAAATTACATATTAATAGCC-TTATAATGTGACCTTTCAGATGTGCCCATTTGCCTAAGAGTCACTTAGTGAACTCAGATTCAGTCATTAGTTGGTACT-TTTTCTAGC---AAAATAGCTTC-TACGGATTCAAGAAAGAAATGATTAGAGGATTTGCTGCATTTCAGAGTTTGCAATCTGAGATAACGAATCCCCTGG-GA-TGGAAGGAGGTGATGTCCCCACGGTGCAGTTAACTCTACTGTTTGCTCAGTGGGA--GGATACTGGAATCATAGCAAGATAAGAAATTCCAGAAGCAAATTTTAAAGCAGTTTCTCTGCCAAAACATTTGAATCCTCCCTATTGCCCACTGAGCCC----TGGCTTCTCACTATCCTAATGCAGGCA-------ACATATCCCATATATTAAAACAACCTTAAATTGGACACTTATCACTGTTTCTCATAAGTACTATTATTTTACTTTGAAGAGTTTTTCTGGGGAAAGGGGATTACAGACTCTAAGACTTAGAAGTGTCTGCAGAAACTACTGTTGTCCACTTTCCAATATTAATTCT-TGTTAAAATGTATATTATATATTATGCTAA-GTATGGTATGCATAAACCCTTTATCTTAATATAACATGAT----GTTAAA-TG--------TTGGATCCCTTTAATGTCTCCAAAAAG-GAAATGCTAAAAATTCATTTAGATTTATCCTTTATGAATAAAATTTTTTGATAACAATTAAT--TCTCTTTTTGCAATT
i chlSab2.chr17            I 16968 C 0
s manLeu1.NW_012104165v1     2263829 923 +   2316924 CATTTTTTGCCAATTATGAATTTTAAAATACAATCTTAATTATAATACGATATAATGTTCATACCAAGAATTGTGCTCATGCAAATTGAATGTATTAATCAGAAAATAATTTA---TGTTAACATATTCATT-AGTTCATATAGAAAAGC-CACACAATACCTTTACACTAACAAAGCTGTTGATGTACATAG-ATGACCAGTCAAAATTACACATTAATAGCC-TTATAATGTGACCTGTCAGATGTGCCCATTTGCCTAAGAGTCACTTAGTGAACTCAGATTCAGTCATTAGTTGGTACT-CTTTCTAGC---AAAATAGCTTC-TACGGATTCAAGAAAGAAATGATTAGAGGATTTGCTGCATTTAAGAATTTGCAATCTGAGATAATGAATCCCCTGA-GA-TGGAAGGAGGTGATGTCCCCATGGTGCAGTTAACTCTACTGTTTGCTCAGTGGGA--GGATATTGGAATCATAGCAAGATAAGAAATTCCAGAAGCAAATTTTAATGTAGTTTCTGTGCCAAAACATTTGAATCCTCCCTATTGCCCACTGAGCCC----TGGCTTCTCACTATCCTAATGCAGACA-------ACATATCACATATATTAAAACATCCTTAAATTGGACCCTTATCAGTATTTCTCATAAATACTATTATTTTACTTTGAAGAGCTTTTCTGGGGAAAGGGGATTACAGACTCTAAGACTTAGAAGTGTCTGCAGAAACTCCTGTTGTCCGCTTTCCTATATTAATTCT-TGTTAAAATGTATATGATATATCATACTAA-GTATGGTATGCATAAACCCTTTATCTTAATATAACATGAT----GTTAAA-TG--------TTGGATCTCTTTAATGTCTCCAAAAAG-GAAATGCTAAAAATTCATTTAGATTTATCCTTTATAAATAAAATTTTTTGATAACAATTAAT--TCTCTTTTTGCAATC
i manLeu1.NW_012104165v1   I 19762 C 0
s colAng1.NW_012115566v1     2175356 913 -   3067355 CATTTCTTGCCAATTATGAATTTCAAAATGCAGTCTTAATTATAACATGATATAATGTTCATACCAAATATTGTGCAC-TGTAAATTGAATATATTAATCAGAAAATGATTTA---TATTAACATATTCATT-AGTTTATAAAGAGAAGC-CACACAGTAACTACTTACTAACAAAGCTGTTGAATTACACAGAATGACCAGTCAACATTGTTTAATAATCGCC-TTACAATGTGACCTGTCAGATGTGCCGTTTTGTCTAAGAGTCACTAAGTGAACTCAGATTCAGTCATTAGCTGGTACT-CTCTGTAGT--AAAAACAGTTTC-TATGGAATCAAGAGAGAAATGATTAGAGGATTTGCTGCACTTAAAAATTTGCAATCTGAGATAATGAATCCCCTGA-GAGTAGGAGGAGGTGATGTCCCCATGGTGCAGTTAACTCCACTCTTTTCTCGGTGGGA--GAATATTGGAATAATAGCAAGGTAAGAAATTCCAGAAGCAAATTTTAAAGCAGTTTATTTGCCAACACATTTGAATCCTCTCTATTGCCCACTGAGCCC----TGGCTTCTCACTATCCTAATGCAGACA-------ACATATCACATATATTAAAACAACCTTCAATTGAAAACTTATCAGTGTTCCTTGTAAGTACTGTTATTTTACTTTGAAGAGCTTTTCCGGAAAAAGGGAATTATAGCCTCTAAGACTTACAAGTGTCTGCAGAAACTACTGTTGTCCACTTTCCAATATTAATTAT-TGTTAAAATGTATATT-TATATTATGCTAA-ATATTATATGCATAAA-CCTTTATCTTAATAAAACATTAT----GTTAAA-TG--------TTGGATCTCTTTAATGTGTCCAAAGAA-GAAATGCTAAAAATTC----------ATCCTTTATGAAT--AACTTTTTTATAACAATTTATGCTCTCTTTTTGCAATT
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            316331 917 -    859332 CACCTCATGCCAATGACTAATTTTTAAATGTAATCCTTATTACAATATTATACAATAGTAACACCAAGAATTATTCTAGTGCAAATGGAATATATTAAATAGGAAAATATTAAGAGAATTAACATGTTTTTTAAATTTATAAATCAATGTACACACAATAACTATATGGCAAC--AGTTATAGATATGCATAG-ATGAGCAATCAAAATTAATTATTAATAACCATTTTAATGCATCTTTTTCGGTGTGTTCTTTCTTTT--GAATTGCCTAGTAAACTCATACTCAGTCATTACTTTGTGCTACTATCTATCTCCAGAATAGTTTCTTATGAAATCTAAAGAGACATAATGA-AGGATTTGCTGTGGCTAATAATTTTCAACTTAAAATAATGAGTCTCCTGAGGA-TAGAAGGAGCTGAGGGCCCAATGGTGCAGTTAATTCTACTGTTTGTACAATGGAGATAGATATCAGGATAAGAAGAAGAAAATAAATTTCAGAAGCAAATTTTCAAGTTGTTTCCCTGTCAAGTAATTTCAAACACATCTTTTGCCCACTTGGCCCTTCATTCCATCTCACTACCCC-ATTCAAACA-------ATGTATTACATGTACATAGAAAACCTCAAGGCTGA--TTTACATGTGTTTTTGACAC------TCATTTCAGTGTGGAGAGCTCTTGTGGGGGAAGAGAATTACAAAATCTAAG----AGAATTACCTGTACAAGCTACTGTTATCCAACTTCCAGAATTAGTGTTAAAATAAAATATGCATCATAGAACATACTGATATATTATCTGTGTGAAACTTTAATCCTAAAATATTGTAATATGGATTATA-TGGTATGTAATTGGATTTGTTTACTGTTTCCAAAAAATGAGATTTTACAAATTCATTTTCATTCATACTTT---------------------TAGTCAAG--TCCTCTTGATCAAGT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1717855 5767 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=41792.000000
s hg38.chr6_GL000254v2_alt    399763 13 +   4827813 AATGTCttttttt
s panTro5.chr6              29374399 13 + 175400573 AATGTCttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29620109 13 + 173848474 AAttttttttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5416904 13 +   6154872 AATGTCttctttt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29575397 13 + 172585720 AATGACttttttc
i rheMac8.chr4             C 0 I 36
s macFas5.chr4              29236635 13 - 170955103 AATGACttttttc
i macFas5.chr4             C 0 I 36
s macNem1.NW_012011356v1     2243329 13 -   2996164 AATGACttttttc
i macNem1.NW_012011356v1   C 0 I 40
s cerAty1.NW_012001495v1     2120511 13 -   2157725 AATGTCttttttt
i cerAty1.NW_012001495v1   C 0 I 467
s chlSab2.chr17             28542381 13 -  71996105 AATGTCttttttt
i chlSab2.chr17            C 0 I 46
s manLeu1.NW_012104165v1     2264752 13 +   2316924 AATGTCttttttt
i manLeu1.NW_012104165v1   C 0 I 508
s colAng1.NW_012115566v1     2176269 12 -   3067355 ATTTCTTTCTTT-
i colAng1.NW_012115566v1   C 0 I 18
e dasNov3.JH570037            317248  0 -    859332 C
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1717855 5767 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=318188.000000
s hg38.chr6_GL000254v2_alt    399776 114 +   4827813 ttttttttttttttttgagatgggagtctcactctgttgcccaggctggagtgcagtggcacaatctccactcactttaacctgtgcctcccaggttgaaaccattcttgtgcc
s panTro5.chr6              29374412 110 + 175400573 tttttttttttt----gagatgggagtctcactctgtcgcccaggctggagtgcagtggcacaatctccactcactttaacctgtgcctcccaggttgaaaccattcttgtgcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29620122 109 + 173848474 ttttttttttgt-----agatgggagtctcactctgtcgcccaggctggagtgcagtggcacaatctccactcactttaacctgtgcctcccaggttgaaaccattcttgtgcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5416917 111 +   6154872 tttttttttttt---tgagatgggagtctcactctgtcgcccaggctggagtgcagtggcacaatctccactcactttaatctgtgcctcccaggttgaaaccattcttgtgcc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29575446 114 + 172585720 ttttttttttttttttgagatgggagtctcattctgttgcccaagctggagtgcagtggcacaatctccactcactttaacctgcacttcccaggttgaaaccattcttgtgcc
i rheMac8.chr4             I 36 C 0
s macFas5.chr4              29236684 114 - 170955103 ttttttttttttttttgagatgggagtctcattctgttgcccaagctggagtgcagtggcacaatctccactcactttaacctgcacttcccaggttgaaaccattcttgtgcc
i macFas5.chr4             I 36 C 0
s macNem1.NW_012011356v1     2243382 114 -   2996164 ttttttttttttttttgagatgggagtctcattctgttgcccaagctggagtgcagtggcacaatctccactcactttaacctgcacttcccaggttgaaaccattcttgtgcc
i macNem1.NW_012011356v1   I 40 C 0
s chlSab2.chr17             28542440 114 -  71996105 ttttttttttttttttgagatgggagtctcactctggtgcccaggctggagtgcagtggcacaatctccactcactttaacctgcgcctcccaggttgaaaccattcttgtgcc
i chlSab2.chr17            I 46 C 0
s colAng1.NW_012115566v1     2176299 113 -   3067355 cttttttttttttctttagat-acagtctcactgtgttggccaggctggagtgcagtggcgcgatctcttctcattgcaaactccaccttctgggttcaagcaatttttgtgct
i colAng1.NW_012115566v1   I 18 C 0
e dasNov3.JH570037            317248   0 -    859332 C
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1717855 5767 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2264765 508 +   2316924 I
e cerAty1.NW_012001495v1     2120524 467 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=176120.000000
s hg38.chr6_GL000254v2_alt    399890 62 +   4827813 ttagcctctcaagtagctgggaccacaggcacatgccaacacacctggctaatttttataat
s panTro5.chr6              29374522 62 + 175400573 ttagcctctcaagtagctgggaccacaggcacatgccaacacacctggctaatttttgtaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29620231 62 + 173848474 ttagcctctcaagtagctgggaccacaggcacatgccaacacacctggctaatttttgtaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5417028 62 +   6154872 ttagcctctcaagtagctgggaccacaggcacatgccaacacacctggctaatttttgtaat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29575560 62 + 172585720 tcagcctcccaagtagctgggaccataggtgcatgccaccacacctggctaatttttgtatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29236798 62 - 170955103 tcagcctcccaagtagctgggaccacaggtgcatgccaccacacctggctaatttttgtatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2243496 62 -   2996164 tcagcctcccaagtagctgggaccacaggtgcatgccaccacacctggctaatttttgtatt
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28542554 62 -  71996105 tcagcctcccaagtagctgggaccacaggtgcatgccaccacacctggctaatttttgtatt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     2176412 62 -   3067355 tcagtctcccaagaagctgggcccacaggcgcgggccaccacttctggctaatttttgtatt
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            317248 20 -    859332 TTATCCTCTC------------------------------------------TTATTACAAT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1717855 5767 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2264765 508 +   2316924 I
e cerAty1.NW_012001495v1     2120524 467 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=372762.000000
s hg38.chr6_GL000254v2_alt    399952 126 +   4827813 tttagtagagatggggtttcaccatgttggccaagctggtcttgaactcctgacctcaggtggtctgctcattttggcctccaaaaattctgggattataggcgtgggccactgctcccggccAAC
s panTro5.chr6              29374584 126 + 175400573 tttagtagagatggggtttcaccatgttggccaagctggtcttgaactcctgacctcaggtggtctgctcatctcggcctccaaaaattctgggattataggcgtgggccactgctcccggccAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29620293 126 + 173848474 tttagtagagatggggtttcaccatgttggccaagctggtcttgaactcctgacctcaggtggtctgctcatctcggcctccaaaaattctgggattataggcgtgggccactgctcccggccAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5417090 126 +   6154872 tttagtagagatggggtttcaccatgttggccaagctggtcttgaactcctgacctcaggtgatctgctcatctcggcctcccaaaattctgggattataggcgtgggccactgctcccggccAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29575622 126 + 172585720 tttagtagagacggggttttaccatgttggccaggctggtcttgaactcctgacctcaggtgatctgctcacttcggcctcccaaaatgctgagattataggcgtgggccactgctcctggccAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29236860 126 - 170955103 tttagtagagacggggttttaccatgttggccaggctggtcttgaactcctgacctcaggtgatctgctcacttcggcctcccaaaatgctgagattataggcgtgggccactgctcctggccAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2243558 126 -   2996164 tttagtagagacggggttttaccatgttggccaggctggtcttgaactcctgacctcaggtaatctgctcacttcggcctcccaaaatgctgagattataggcgtgggccactgctcctggccAAT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28542616 126 -  71996105 tttagtagagacggggtattaccatattggccaggctggtcttgaactcctgacctcaggtgatctgctcaccttggcctcccaaaatgctgagattataggcgtgggccactgctcccggccAAT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     2176474 125 -   3067355 tttagtagagatggggtttcaccatgttgaccagggtggtgtcaaactcctggcctcaagtgatctgcccaccttggcctcccaaagtgttgggattacaggggtgagccaccattccc-ACAAAT
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            317268   0 -    859332 C
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1717855 5767 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2264765 508 +   2316924 I
e cerAty1.NW_012001495v1     2120524 467 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=146113.000000
s hg38.chr6_GL000254v2_alt    400078 43 +   4827813 TGATGTCTATTTCTTCTTGTAGATAATTAGTAACATCTTCCGC-------
s panTro5.chr6              29374710 43 + 175400573 TGATGTCTATTTCTTCTTGTAGATAATTAGTAACATCTTCCGC-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29620419 43 + 173848474 TGATGTCTATTTCTTCTTGTAGATAATTAGTAACATCTTCCGC-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5417216 43 +   6154872 TGATGTCTATTTCTTCTTGTAGATAAGTAGTAACATCTTCCGC-------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29575748 43 + 172585720 TGATGTCTATTTCTTCTTGTAGATAATTAGTAACATCTTCCAC-------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29236986 43 - 170955103 TGATGTCTATTTCTTCTTGTAGATAATTAGTAACATCTTCCAC-------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2243684 43 -   2996164 TGATGTCTATTTCTTCTTGTAGATAATTAGTAACATCTTCCAC-------
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28542742 43 -  71996105 TGATGTCTATTTCTTCTTGTAGATAATTAGTAACATCTTCCAC-------
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     2176599 43 -   3067355 AGATGTCTATTTCTTCTTGTAGATAATTAATAACATCTTCCGT-------
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            317268 50 -    859332 TGAAGCACAATTCTTCTTACAGGCAATTATTAAGACCTTTTATTACATTT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1717855 5767 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2264765 508 +   2316924 I
e cerAty1.NW_012001495v1     2120524 467 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=159130.000000
s hg38.chr6_GL000254v2_alt    400121 36 +   4827813 GGAATTTGACTTCAGTTTTTCT-AGAGTCCTTTTAAC---
s panTro5.chr6              29374753 36 + 175400573 GGAATTTGACTTCAGTTTTTCT-AGAGTCCTTTTAAC---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29620462 36 + 173848474 GGAATTTGACTTCAGTTTTTCT-AGAGTCCTTTTAAC---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5417259 36 +   6154872 GGAATTTGACTTCAGTTTTTCT-AGAGTCCTTTTAAC---
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29575791 36 + 172585720 GGAATTTGACTTCAGTTTTTCT-GGAGTCCTTTTAAC---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29237029 36 - 170955103 GGAATTTGACTTCAGTTTTTCT-GGAGTCCTTTTAAC---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2243727 36 -   2996164 GGAATTTGACTTCAGTTTTTCT-GGAGTCCTTTTAAC---
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28542785 37 -  71996105 GGAATTTGACTTCAGTTTTTCTCGGAGTCCTTTTAAC---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2265273 36 +   2316924 GGAATTTGACTTCAGTTTCTCT-GGAGTCCTTTTAAC---
i manLeu1.NW_012104165v1   I 508 C 0
s colAng1.NW_012115566v1     2176642 36 -   3067355 GGAATTTGACTTCAGTTTTTCT-AGAGTCCTTTTAAC---
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            317318 39 -    859332 GGAACTCGACTCCAGGTTTCCT-AAAGTTTTTTTAAAAAT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1717855 5767 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e cerAty1.NW_012001495v1     2120524 467 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1982463.000000
s hg38.chr6_GL000254v2_alt    400157 392 +   4827813 TTCTGTTTCAAAAACTACTTTCCTTGATATTAAAGTCGTTGAAATAATCTACACCTTCTGCTCAATCCTGCAGACTTAAAACATCATC--ACCACTGTCTTTGGCTCATCTCTTTCCCAGAGGACACACATTTAACAAAATTTCCAAGTTAACCTCCTATGTTAATCTCTCACACTTCCCCCATCTTTTTCATTTTTACTTCTCTTATCCTACTAGAGAGCCTCATTATCTATTGCAAAGATTGTTGCAGTACATTTAACT----AATTTCCTATGTTTTTGTACTCCAAGTGG-TTTTTTACTTTGCTAAATGTAG---TCATAAAATAAAGGTCTTACATTGTCTCAGGGTTTAAAATCCTTCAAGTTCTCATCTCCTATAGAAACACACATTCTTTAAT
s panTro5.chr6              29374789 392 + 175400573 TTCTGTTTCAAAAACTACTTTCCTTGATATTAAAGTCGTTGAAATAATCTACACCTTCTGCTCAATCCTGCAGACTTAAAACATCATC--ACCACTGTCTTTGGCTCATCTCTTTCCCAGAGGACACACATTTAACAAAATTTCCAAGTTAACCTCCTATGTTAATCTCTCACACTTCCCCCATCTTTTTCATTTTTACTTCTCTTTTCCTACTAGAGAGCCTCATTATCTATTGCAAAGATTGTTGCAGTACATTTAACT----AATTTCCTATGTTTTTGTACTCCAAGTGG-TTTTTTACTTTGCTAAATGTAG---TCATAAAATAAAGGTCTTACATTGTCTCAGGGTTTAAAATCCTTCAAGTTCTCATCTCCTATAGAAACACACATTCTTTAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29620498 392 + 173848474 TTCTGTTTCAAAAACTACTTTCCTTGATATTAAAGTCATTGAAATAATCTACACCTTCTGCTCAATCCTGCAGACTTAAAACATCATC--ACCACTGTCTTTGGCTCATCTCTTTCCCAGAGGACACACATTTAACAAAATTTCCAAGTTAACCTCCTATGTTAATCTCTCACACTTCCCCCATGTTTTTCATTTTTACTTCTCTTTTCCTACTAGAGAGCCTCATTATCTATTGCAAAGATTGTTGCAGTACATTTAACT----AATTTCCTATGTTTTTGTACTCCAAGTGG-TTTTTTACTTTGCTAAATGTAG---TCATAAAATAAAGGTCTTACATTGTCTCAGGGTTTAAAATCCTTCAAGTTCTCATCTCCTATAGAAACACACATTCTTTAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5417295 392 +   6154872 TTCTGTTTCAAAAACTACTTTCCTTGATATTAAAGTCGTTGAAATAATCTACACCTTCTGCTCAATCCTGCAGACTTAAAACATCATC--ACCACTGTCTTTGGCTCATCTCTTTCCCAGAGGACACACATTTAACAAAATTTCCAAGTTAACCTCCTATGTTAATCTCTCACACTTCCCCCATCTTTTTCATTTTTACTTCTCTTATCCTACTAGAGAGCCTCATTATCTATTGCAAAGATTGTTGCAGTACATTTAACT----AATTTCCTATGTTTTTGTACTCCAAGTGG-TTTTTTACTTTGCTAAATGTAG---TCATAAAATAAAGGTCTTACATTGTCTCAGGGTTTAAAATCCTTCAAGTTCTCATCTCCTATAGAAACACACATTCTTTAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29575827 390 + 172585720 TTCTGTTTCAAAAACTACTTTCCTTGATATTAAAGTCGTTGAAATAATCTACACGTTCTGCTCAATCCTGCAGACTTAAAACATCAAC--ACCACTGTCTTTGGCTCATCTTTTTCCCAGAGGACACACATTGA--AAAATTTCCAAGTTAACCTCCTATGTTAATCTCTCACACTTTCCCCATCTTTTTCATTTTTACTTCTCTTATCCTACTAGAGAGCCTCATTATCTATTGCATAGATTGTTGCAGTACACTTAACT----AATTTCCCGTGTTTTTCTACTCCAAATGG-TTTTTTACTTTGCTAAATGTAG---TCATAAAATAAAGGTCTTAAATAGTCTCAGGGTTTAAAATCCTTCAAGTTCTCATCTCCTATAGAAACACACATTCTTTAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29237065 390 - 170955103 TTCTGTTTCAAAAACTACTTTCCTTGATATTAAAGTCGTTGAAATAATCTACACGTTCTGCTCAATCCTGCAGACTTAAAACATCAAC--ACCACTGTCTTTGGCTCATCTCTTTCCCAGAGGACACACATTGA--AAAATTTCCAAGTTAACCGCCTATGTTAATCTCTCACACTTTCCCCATCTTTTTCATTTTTACTTCTCTTATCCTACTAGAGAGCCTCATTATCTATTGCATAGATTGTTGCAGTACACTTAACT----AATTTCCCGTGTTTTTCTACTCCAAATGG-TTTTTTACTTTGCTAAATGTAG---TCATAAAATAAAGGTCTTAAATAGTCTCAGGGTTTAAAATCCTTCAAGTTCTCATCTCCTATAGAAACACACATTCTTTAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2243763 390 -   2996164 TTCTGTTTCAAAAACTACTTTCCTTGATATTAAAGTCGTTGAAATAATCTACACCTTCTGCTCAATCCTGCAGACTTAAAACATCAAC--ACCACTGTCTTTGGCTCATCTCTTTCCCAGAGGACACACAATGA--AAAATTTCCAAGTTAACCTCCTATGTTAATCTCTCACACTTTCCCCATCTTTTTCATTTTTACTTCTCTTATCCTACTAGAGAGCCTCATTATCTATTGCATAGATTGTTGCAGTACACTTAACT----AATTTCCCGTGTTTTTCTACTCCAAATGG-TTTTTTACTTTGCTAAATGTAG---TCATAAAATAAAGGTCTTAAATAGTCTCAGGGTTTAAAATCCTTCAAGTTCTCATCTCCTATAGAAACACACATTCTTTAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2120991 392 -   2157725 TTCTGTTTCAAAAACTACTTTCCTTGATATTAAAGTTGTTGAAATAATCTACACCTTCTGCTCAATCCTGCAGACTTAAAACATCAAC--ACCACTGACTTTGGCTCATCTTTTTCCCAGAGGACACACATTTAACAAAATTTCCAAGTTAACCTCCTATGTTAATCTCTCTCACTTTCCCCATCTTTTTCATTTTTACTTCTCTTATCCTACTAGAGAGCCTCATTATCTATTGCATAGATTGTTGCAGTACACTTAACT----AATTTCCTGTGTTTTTCTACTCCAAATGG-TTTTTTACCTTGCTAAATGTAG---TCATAAAATAAAGGTCTTATATAGTCTCAGGGCTTAAAATCCTTCAAGTTCTCATCTCCTATAGAAACACACATTCTTTAAT
i cerAty1.NW_012001495v1   I 467 M 1175
s chlSab2.chr17             28542822 390 -  71996105 TTCTGTTTCAAAAACTACTTTCCTTGATTTTAAAGTCGTTGAAATAATCTACACCTTCTGCTCAATCCTGCAGACTTAAAACATCAAC--ACCACTGTCTTTGGCTCATCTCTTTCCCAGAGGACACACATTGA--AAAATTTCCAAGTTAACCTCCTATGTTAATCTCTCACACTTTCCCCATCTTTTTCATTTTTACTTCTCTTATCCTACTAGAGAACCTCATTATCTATTGCATAGATTGTTGCAGTACACTTAACT----AATTTCCCGTGTTTTTCTACTCCAAATGG-TTTTTTACTTTGCTAAATGTAG---TCATAAAATAAAGGTCTTAAATAGTCTCAAGGTTTAAAATCCTTCAAGTTCTCATCTCCTATAGAAACACACATTCTTTAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2265309 392 +   2316924 TTCTGTTTCAAAAACTACTTTCCTTGATATTAAAGTTGTTGAAATAATCTACACCTTCTGCTCAATCCTGCAGACTTAAAACATCAAC--ACCACTGTCTTTGGCTCATCTTTTTCCCAGAGGACACACATTTAACAAAATTTCCAAGTTAACCTCCTATGTTAATCTCTCACACTTTCCCCATCTTTTTCATTTTTACTTCTCTTATCCTACTAGAGAGCCTCATTATCTATTGCATAGATTGTTGCAGTACACTTAACT----AATTTCCCGTGTTTTTCTACTCCAAATGG-TTTTTTACTTTGCTAAATGTAG---TCATAAAATAAAGGTCTTATATAGTCTCAGGGCTTAAAATCCTTCAAGTTCTCATCTCCTATAGAAACACACATTCTTTAAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2176678 391 -   3067355 TTCTGTTTCAAAAACTACTTTCCTTGACTTTAAAGTCTTTGAAAAAATCTACGCCTTCTGCTCAGTCCTGCAGACTTAAAACATCAAC--ACCACTGTCTTTGGCTCATCTCTTTCCCAGAGGACACACATTTAACAAAGTTTCCAAGTTAACCTCCTGTATTAATCTCTCACACTTTCCCCATCTTTTTCATTTTTACTTCTC--ATCCTACTAGAGAGGCTCATTTTCTATTGCATAGATTGTTGAAGTACATTTAAGT----AATTTCCTGTGTTTTCCTACTACAAATGATTTTTTTACTTTGCCAAATATAG---TCACAAAATAAAGATCTTATATAATCTCAGGGTTTAAAATCCATCAAATTCTCGTCTTCTATAGAAACACACATTCTTTAAT
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            317357 362 -    859332 TTAGGATCCAAAGTCTACTTTTCTGGATACTAATCTCCTTGATAAAATCAACACCTCTTTCCCCGT--TATAGATTTAAAGTTTTGTCTTTCAATTCTCTCTGGTTCATCTCTTTACCAGAGGATTCACATTCAA-TAAATTTCCAAGTCAACCTCCTCCATCAA-------------------------------TGCCACTCTTTTCCTAGTCTAGGACCTCATTTCCTGTTGCACTGATTGTTGCAATGGCCTTAAATAGACAATTCCCAGGATTTTCCTTCTCTAAACCA---TTTCATTTTGCCAGATGTAGTCTTCTTAAAGCCAAGGCCTTGCACACTTTCAGTCCTGAAA---CTTCTATGCCTCACCATGTATAGAAATACACATTTTAAGAT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1717855 5767 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=628563.000000
s hg38.chr6_GL000254v2_alt    400549 160 +   4827813 ATCAGCCTTGGTTCTGGTTCCTGGTTCTCATTCAACATAGATCCTCCT----TTCAGTCTCCCATATTGC-CCCATGGAAT-TTCAGA-TGGAAACATTGAATTCT-TCATGATTTTGAATGTATAATTTTAAATTTCCATCATTTTTGCAAGTAGTTTGTTATAAGg
s panTro5.chr6              29375181 160 + 175400573 ATCAGCCTTGGTTCTGGTTCCTGGTTCTCATTCAACATAGATCCTCCT----TTCAGTCTCCCATATTGC-CCCATGGAAT-TTCAGA-TGGAAACATTGAATTCT-TCATGATTTCGAATGTATAATTTTAAATTTCCATCATTTTTGCaagtagtttgttataagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29620890 160 + 173848474 ATCAGCCTTGGTTCTGGTTCCTGGTTCTCATTCAACATAGATCCTCCT----TTCAGTCTCCCATATTGC-CCCATGGAAT-TTCAGA-TGGAAACATTGAATTCT-TCATGATTTCGAATGTATAATTTTAAATTTCCATCATTTTTGCaagtagtttgttataagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5417687 160 +   6154872 ATCAGCCTTGGTTCTGGTTCCTGGTTCTCATTCAACATAGATCCTCCT----TTCAGTCTCCCATATTGC-CCCATGGAAT-TTCAGA-TGGAAACATTGAATTCT-TCATGATTTCGAATGTATAATTTTAAATTTCCATCATTTTTGCaagtagtttgttataagg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29576217 160 + 172585720 ATCAGCCTTGGTTCTGGTTCCTGGTTCTAGTTCAACATATATCCTCCT----TTCAGTCTTCCATATTGC-CCCATGTGAT-TTCAGA-TGGAAACATTGAATTCT-TCATGATTTTGAATGTATAATTTTAAATTTCCATCATTTTTGCaaatagtttgttataagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29237455 160 - 170955103 ATCAGCCTTGGTTCTGGTTCCTGGTTCTAGTTCAACATATATCCTCCT----TTCAGTCTTCCATATTGC-CCCATGTGAT-TTCAGA-TGGAAACATTGAATTCT-TCATGATTTTGAATGTATAATTTTAAATTTCCATCATTTTTGCAAGTAGTTTGTTATAAGg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2244153 160 -   2996164 ATCAGCCTTGGTTCTGGTTCCTGGTTCTAGTTCAACATATATCCTCCT----TTCAGTCTTCCATATTGC-CCCATGTGAT-TTCAGA-TGGAAACATTGAATTCT-TCATGATTTTGAATGTATAATTTTAAATTTCCATCATTTTTGCaagtagtttgttataagg
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28543212 160 -  71996105 ATCAGCCTTGGTTCTGGTTCCCGGTTCTAGTTCAGCATATATCCTCCT----TTCAGTCTTCCATATTGC-CCCATGTGAT-TTCAGA-TGGAAACATTGAATTCT-TCATGATTTTGAATGTGTAATTTTAAATTTCCATCATTTTTGCAAGTAGTTTGTTATAAGg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2265701 160 +   2316924 ATCAGCCTTGGTTCTGGTTCCTGGTTCTAGTTCAACATATATCCTCCT----TTCAGTCTTCCATATTGC-CCCATGTGAT-TTCAGA-TGGAAATATTGAATTCT-TCATGATTTCGAATGTATAATTTTAAATTTCCATCATTTTTGCAAGTAGTTTGTTATAAGg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2177069 122 -   3067355 ATCAGCCTTGTTTCTGGTTCCTGGTTCTAGTTCAACATATATCCTTCTTTCATTCAGTCTTACATATTGC-CCCATGTGAT-TTCAGA-CGGAAACATTGAGTTCT-TCATG------------------------------------------AGTTTGTTATAAGG
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            317719 159 -    859332 ----ATCCTAGGTCTGGTCCCTTG-GATATTTCAACACACACCTCCTT----TTCAATCTTAGCTACTGTACCCACGTAGTAGTCAGCTTGGACATACTGAATTATGCCTTCATTTTGGATGCATCATCTTAAATTTGCATCATCTTTGCAAATAGCTTGTTATTAAG
i dasNov3.JH570037         C 0 I 3083
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1717855 5767 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e cerAty1.NW_012001495v1     2121383 1175 -   2157725 M
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1293293.000000
s hg38.chr6_GL000254v2_alt    400709 346 +   4827813 tggaaaaagcatgaatttttggtaattgaaagctttcaaattctagttctgacgtacactatgcaagctcaagaattagtgaaccacattttcattatctatcaaatgtggctaatacataccttaaagggttattgaaagattaaataagaccatacatacaatatgtttaacactttta----------ctagctcatggcagcttttcaatagttgtgagttctCCTTTTTAACATGACTTTTTGATTATGATTATGATATTTCCTCAGCCAGTGATGTATTACTATA-TACTCCTATTAAATATTACAATTTTTATTTGCCTTTTGAAAATATT-----TTTAATTCTTCTTTGAGTA
s panTro5.chr6              29375341 343 + 175400573 tggaaaaagcatgaatttttggtaattgaaagctttcaaattccagttctgacgtacactatgcaagctcaagaattagtgaaccacattttcattatctatcaaatgtggctaatacataccttaaagggttattgaaagattaaataagaccatacatacaatatgtttaacactttta----------ctagctcatggcagcttttcaatagttgtgagttctCCTTTTTAACATGACTTTTTGATTATGATTAT---ATTTCCTCAGCCAGTGATGTATTACTATA-TACTCCTATTAAATATTACAATTTTTATTTGCCTTTTGAAAATATT-----TTTAATTCTTCTTTGAGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29621050 346 + 173848474 tggaaaaagcatgaatttttggtaattgaaagctttcaaattccagttctgacgtacactatgcaagctcaagaactagtgaaccacattttcattatctatcaaatgtggctaatacataccttaaagggttattgaaagattaaataagaccatacatacaatatgtttaacactttta----------ctagctcatggcagcttttcaatagttgtgagttctCCTTTTTAACATGACTTTTTGATTATGATTATGATATTTCCTCAGCCAGTGATGTATTACTATA-TACTCCTATTAAATATTACAATTTTTATTTGCCTTTTGAAAATATT-----TTTAATTCTTCTTTGAGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5417847 346 +   6154872 tggaaaaagcatgaatttttggtaattgaaagctttcaaattccagttctgacgtatactatgcaagctcaagaattagtgaaccacattttcattatctatcaaatgtggctaatacataccttaaagggttattgaaagattaaataagaccatacatacaatatgtttaacactttta----------ctagctcatggcagcttttcaatagttgtgagttctCCTTTTTAACATGACTTTTTGATTATGATTATGATATTTCCTCAGCCAGTGATGTATTACTATA-TACTCCTATTAAATATTACAATTTTTATTTGCCTTTTGAAAATATT-----TTTAATTCTTCTTTGAGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29576377 351 + 172585720 tggaaaaagcatgaatttttggcatttgaaagctttcaaattccagttctgacatacactatgcaagctcaataattagtgaaccacattttaattatctattaaatgtggctaatacataccttaaaggattattgaaagattaaataagaccacacataaaatgtgtttaacactttta----------ctgactcatggcagctttttaatagttgtgagttctCCTTTTTAACATAACTTTTTGATTATGATTATGATATTTCCTCAGCCAGTGATGTCTTACTATA-TACTCCTATTAAATATTACAATTTTTACTTGCCTTTTGAAAATATTTTTAATTTAATTCTTCTTTGAGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29237615 351 - 170955103 tggaaaaagcatgaatttttggcatttgaaagctttcaaattccagttctgacatacactatgcaagctcaataattagtgaaccacattttcattatctattaaatgtggctaatacataccttaaaggattattgaaagattaaataagaccacacataaaatgtgtttaacactttta----------ctgactcatggcagctttttaatagttgtgagttctCCTTTTTAACATAACTTTTTGATTATGATTATGATATTTCCTCAGCCAGTGATGTCTTACTATA-TACTCCTATTAAATATTACAATTTTTACTTGCCTTTTGAAAATATTTTTAATTTAATTCTTCTTTGAGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2244313 351 -   2996164 tggaaaaagcatgaatttttggcatttgaaagctttcaaattccagttctgacatacactatgcaagctcaataattagtgaaccacattttcattatctattaaatgtggctaatacataccttaaaggattattgaaagattaaataagaccacacataaaatgtgtttaacactttta----------ctgactcatggcagctttttaatagttgtgagttctCCTTTTTAACATAACTTTTTGATTATGATTATGATATTTCCTCAGCCAGTGATGTCTTACTATA-TACTCCTATTAAATATTACAATTTTTACTTGCCTTTTGAAAATATTTTTAATTTAATTCTTCTTTGAGTA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28543372 350 -  71996105 tagaaaaagcatgaatttttggcatttgaaagctttcaaattccagttctgacatacactatgcaagctcaagaattagtgaaccacattttcattatctatcaaatgtggctaatacataccttaaaggattattgaaagattaaataagaccatacataaaatgtg-ttaacactttta----------ctgactcatggcagcttttcaatagttgtgagttctCCTTTTTAACATAACTTTTTGATTATGATTATGGTATTTCCTCAGCCAGTGATGTCTTACTATA-TACTCCTATTAAATATTAAAATTTTTATTTGCATTTTGAAAATAGTTTTAATTTAATTATTCTTTGAGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2265861 351 +   2316924 tggaaacagcatgaatttttggcacttgaaagctttcaaattccagttctgacatacactatgcaagctcaagaattagtgaaccacgttttcattatctatcaaatgtggctaatgcataccttaaaggattattgaaagattaaataagaccatacataaaatgtgtttaacactttta----------ctgactcatggcagcttttcaatagttgtgagttctCCTTTTTAACATAACTTTTTGATTATGATTATGATATTTCCTCAGCCAGTGATGTCTTACTATA-TACTCCTATTAAATATTAAAATTTTTATTCGCCTTTTGAAAATATTTTTAATTTAATTCTTCTTTGAGTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2177191 350 -   3067355 TGGAAAAAGCATGAATTTTTGGTGATTGGAAACTTTCAAATTCCAGTTCTGACATAAACTATGCAAGCTCAAGAATTACTAAACCACATTTTTATTATCTATCAAGTGTGGCTAATACATACCTTAAAGGGTTATCGAAAGGTTAAATAAGACTGCGGATCCAATGTGTTTAACACTTTTAGTAACTTTTTGTAACTTATGGCAGCTTTTCGATAGTTTTGACTTCTCCTTTTT-ATTTAACTTTTTGATTATGA------TATTTCCTCAACCAGTGATGTATTACTATGTTACTCCTATTAAATATTACAATTTTTATCTACCCTTTGAAAATAT-----ATTTAATTCTTCTTTGAGTA
i colAng1.NW_012115566v1   C 0 I 938
e dasNov3.JH570037            317878 3083 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1717855 5767 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e cerAty1.NW_012001495v1     2121383 1175 -   2157725 M
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=706881.000000
s hg38.chr6_GL000254v2_alt    401055 256 +   4827813 C-TTTAATTAGTCTTCTTTTTTCATTCCAAAGGCACAttct-tttttttttttttttGCTTCTGTGTCTATATTATTATTAtttttattatactttaagttctagggtacacttgcacaaagtgcaggtttgttacataggtatacatgtgccatgttggtttgttgcacccattaactcatcatttacattaggtatttctcctagtgttatccctccccctgccccccaacccatgacaggcacccgtgtgtgatg
s panTro5.chr6              29375684 243 + 175400573 C-TTTAATTAGTCTTCTTTTTTCATTCCAAAGGCACATTCT-TTTTTTT--------GCTTCTGTGTCTATATTATTATTAtttttattata-----agttctagggtacacgtgcacaaagtgcaggtttgttacataggtatacatgtgccatgttggtttgttgcacccattaactcatcatttacattaggtatttctcctagtgttatccctccccctgccccccaacccatgacaggcacccgtgtgtgatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29621396 240 + 173848474 C-TTTAATTAGTCTTCTTTTTTCATTCCAAAGGCACATTCT-TTTTTTT--------GCTTCTGTGTCTA---TATTATTAtttttattata-----agttctagggtacacgtgcacaaagtgcaggtttgttacataggtatacatgtgccatgttggtttgttgcacccattaactcatcatttacattaggtatttctcctagtgttatccctccccctgccccccaacccatgacaggcacccgtgtgtgatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5418193 254 +   6154872 C-TTTAATTAGTCTTCTTTTTTCGTTCCAAAGGCACATTCT-TTTTTTT-TTTTTTTGCTTCTGTGTCTATATTATTATTAtttttattatactttaagttctagggtacatgtgcacaaagtgcaggtttgttacataggtatacatgtgccatgttggtttgttgcacccattaactcatcatttacattaggtatttctcctaatgttatccctccccctg-cccccaacccatgacaggcacccgtgtgtgatg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29576728 249 + 172585720 C-TTTAATTAGTTTTCTTTTTTCATTCCAAAGGCACATTCC---TTTTT--TTTTTTGCTTTTATGTCTA---CATTATTAtttttattattctttaagttctagggtacatatgcacaacgttcaggtttgttacataggtatatatgtgccatgttggtttgttgcacccattaacttgtcatttacattaggtatttctcctaatgttattccttctcctgccccctaccccactacaggccctggtgtgtgatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29237966 249 - 170955103 C-TTTAATTAGTTTTCTTTTTTCATTCCAAAGGCACATTCC---TTTTT--TTTTTTGCTTTTATGTCTA---TATTATTAtttttattattctttaagttctagggtacatgtgcacaacgttcaggtttgttacataggtatatatgtgccatgttggtttgttgcacccattaacttgtcatttacattaggtatttctcctaatgttattccttctcctgccccctaccccactacaggccctggtgtgtgatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2244664 251 -   2996164 C-TTTAATTAGTTTTCTTTTTTCATTCCAAAGGCACATTCC-TTTTTTT--TTTTTTGCTTTTATGTCTA---CATTATTAtttttattattctttaagttctagggtacatgtgcacaacgttcaggtttgttacataggtatatatgtgccatgttggtttgttgcacccattaacttgtcatttacattaggtatttctcctaatgttattccttctcctgccccctaccccactacaggccctggtgtgtgatg
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28543722 252 -  71996105 C-TTTAATTAGTCGTCTTTTTTCATTCCAAAGGCACATTCCTTTTTTTT--TTTTTTGCTTTTATGTCTA---CATTATTAtttttattatactttaagttctagggtacatgtgcacaacgttcaggtttgttacataggtatacatgtgccacgttggtttgttgcacccattaacttgtcatttacattaggtatttctcctaatgttatcccttctcctgtcccctaccccactacagtccccggtgtgtgatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2266212 252 +   2316924 CTTTTAATTAGTTGTCTTTTTTCATTCCAAAGGCACATTCC-TTTTTTT--TTTTTTGCTTTTATGTCTA---CATTATTAtttttattatattttaagttctagggtacatgtgcacaacgttcaggtttgttacataggtatacatgtgccatgttggtttgttgcacccattaacttgtcatttacattaggtatttctcctaatgttatcccttctcctgtcccctaccccactacagtccctggtgtgtgatg
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            317878 3083 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1717855 5767 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e colAng1.NW_012115566v1     2177541 938 -   3067355 I
e cerAty1.NW_012001495v1     2121383 1175 -   2157725 M
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=569743.000000
s hg38.chr6_GL000254v2_alt    401311 152 +   4827813 ttcctcgccctgtgtccaagtgttttcattgttcaattcccacctatgagtgagaacatgtggtgtttgg-ttttctgtccttgtgatagtttgctcagaatgatggtttccagcttcatctatgtccctgcaaaggacatgaactcatccCA
s panTro5.chr6              29375927 152 + 175400573 ttcctcgccctgtgtccaagtgttttcattgttcaattcccacctatgagtgagaacatgtggtgtttgg-ttttctgtccttgtgatagtttgctcagaatgatggtttccagcttcatctatgtccctgcaaaggacatgaactcatccCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29621636 152 + 173848474 ttcctcgccctgtgtccaagtgttttcattgttcaattcccacctatgagtgagaacatgtggtgtttgg-ttttctgtccttgtgatagtttgctcagaatgatggtttccagcttcatctatgtccctgcaaaggacatgaactcatccCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5418447 152 +   6154872 ttcctcgccctgtgtccaagtgttttcattgttcaattcccacctatgagtgagaacatgtggtgtttgg-ttttctgtccttgtgatagtttgctcagaatgatggtttccagcttcatctatgtccctgcaaaggacatgaactcatccCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29576977 152 + 172585720 ttccccagcctgcgtccaagtgttctcattgttcaattcccacctgtgagcaagaacatgtggtgtttgg-ttttctgcctttgtgacagtttgctcagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcatccCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29238215 152 - 170955103 ttccccgccctgtgtccaagtgttctcattgttcagttcccacctgtgagcaagaacatgtggtgtttgg-ttttctgcctttgtgacagtttgctcagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcatccCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2244915 149 -   2996164 ttccccgccctgtgtccaagtgttctcattgttcaattcccacctgtgagcaagaacatgtggtgtttggtttttctgcctttgctgcagtttgct-agaatgatgggtt-cagcttc-tccatgtccctgcaaaggaca-gaactcatccCA
i macNem1.NW_012011356v1   C 0 I 323
s cerAty1.NW_012001495v1     2122558 152 -   2157725 ttccccgccctgtgtccaagtgttctcattgttcatttcccacctgtgagcaagaacatgtggtgtttgt-ttttctgcctttgtgacagtttgctcagaattatggtttccagcttcatccttgtccctgcaaaggacatgaactcatccCA
i cerAty1.NW_012001495v1   M 1175 C 0
s chlSab2.chr17             28543974 152 -  71996105 ttccccgccctgtgtccacgtgttcttattgttcatttcccacctgtgagcaagaacatgtggtgtttgg-ttttctgcctttgtgccagtttgctcagaatgatggtatccagcttcatccatgtccctgcaaaggacatgaactcatccCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2266464 152 +   2316924 ttccccgccctgtgtccaagtgttctcattgttcatttcccacctgtgagcaagaacatgtggtgtttgt-ttttctgcctttgtgacagtttgctcagaatgatggtttccagcttcatccttgtccctgcaaaggacatgaactcatccCA
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            317878 3083 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1717855 5767 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e colAng1.NW_012115566v1     2177541 938 -   3067355 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=71878.000000
s hg38.chr6_GL000254v2_alt    401463 22 +   4827813 AAGGCACATTCTTGAAGGTGCA
s panTro5.chr6              29376079 22 + 175400573 AAGGCACATTCTTGAAGGTGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29621788 22 + 173848474 AAGGCACATTCTTGAAGGTGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5418599 22 +   6154872 AAGGCACATTCTTGAAGGTGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29577129 22 + 172585720 AAGGCACATTCTTGAAGGTGCG
i rheMac8.chr4             C 0 I 316
s macFas5.chr4              29238367 22 - 170955103 AAGGCACATTCTTGAAGGTGCG
i macFas5.chr4             C 0 I 316
s cerAty1.NW_012001495v1     2122710 22 -   2157725 AAGGCACATTCTTGAAGGTGCA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28544126 22 -  71996105 AAGACACATTCTTGAAGGTGCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2266616 22 +   2316924 AAGGCACATTCTTGAAGGTGCG
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            317878 3083 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1717855 5767 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e colAng1.NW_012115566v1     2177541 938 -   3067355 I
e macNem1.NW_012011356v1     2245064 323 -   2996164 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=20880.000000
s hg38.chr6_GL000254v2_alt    401485 5 +   4827813 TGTTA
s panTro5.chr6              29376101 5 + 175400573 TGTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29621810 5 + 173848474 TGTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5418621 5 +   6154872 TGTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29577467 5 + 172585720 TGTTA
i rheMac8.chr4             I 316 C 0
s macFas5.chr4              29238705 5 - 170955103 TGTTA
i macFas5.chr4             I 316 C 0
s macNem1.NW_012011356v1     2245387 5 -   2996164 TGTTA
i macNem1.NW_012011356v1   I 323 C 0
s cerAty1.NW_012001495v1     2122732 5 -   2157725 TGTTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28544148 5 -  71996105 TGTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2266638 5 +   2316924 TGTTA
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            317878 3083 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1717855 5767 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e colAng1.NW_012115566v1     2177541 938 -   3067355 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=5500.000000
s hg38.chr6_GL000254v2_alt    401490 1 +   4827813 G
s panTro5.chr6              29376106 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29621815 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5418626 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29577472 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29238710 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2245392 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2122737 1 -   2157725 G
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28544153 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2266643 1 +   2316924 G
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2178479 1 -   3067355 G
i colAng1.NW_012115566v1   I 938 C 0
e dasNov3.JH570037            317878 3083 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1717855 5767 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=12606.000000
s hg38.chr6_GL000254v2_alt    401491 2 +   4827813 CA
s panTro5.chr6              29376107 2 + 175400573 CA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29621816 2 + 173848474 CA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5418627 2 +   6154872 CA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29577473 2 + 172585720 CA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29238711 2 - 170955103 CA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2245393 2 -   2996164 CA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2122738 2 -   2157725 CA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28544154 2 -  71996105 CA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2266644 2 +   2316924 CA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2178480 2 -   3067355 CA
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            320961 2 -    859332 CA
i dasNov3.JH570037         I 3083 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1717855 5767 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1062530.000000
s hg38.chr6_GL000254v2_alt    401493 181 +   4827813 CTTCTTGCCTTGCAG----TTATTATGCTATGCAGATCTTAGGACATCTCTAATATGGAGAAAGCCACTGTTAAACCTTCTTGAGTTCTACCTTAAATATTTTTCCAA---------ATACATTTTTAGTGACTTTAAATCT-AGGGTTAAAATGCTTTGTTTTC----TTCCATTTGTTATTTAGGAAAGGCCTACTT
s panTro5.chr6              29376109 181 + 175400573 CTTCTTGCCTTGCAG----TTATTATGCTATGCAGATCTTAGGACATCTCTAATATGGAGAAAGCCACTGTTAAACCTTCTTGAGTTCTACCTTAAATATTTTTCCAA---------ATACATTTTTAGTGACTTTAAATCT-AGGGTTAAAATGCTTTGTTTTC----TTCCATTTGTTATTTAGGAAAGGCCTACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29621818 181 + 173848474 CTTCTTGCCTTGCAG----TTATTATGCTATGCAGATCTTAGGACATCTCTAATATGGAGAAAGCCACTGTTAAACCTTCTTGAGTTCTACCTTAAATATTTTTCCAA---------ATACATTTTTAGTGACTTTAAATCT-AGGGTTAAAATGCTTTGTTTTC----TTCCATTTGTTATTTAGGAAAGGCCTACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5418629 181 +   6154872 CTTCTTGCCTTGCAG----TTATTATGCTATGCAGATCTTAGGACATCTCTAATATGGAGAAAGCCACTGTTAAACCTTCTTGAGTTCTACCTTAAATATTTTTCCAA---------ATACATTTTTAGTGACTTTAAATCT-AGGGTTAAAATGCTTTGTTTTC----TTCCATTTGTTATTTAGGAAAGGCCTACTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29577475 181 + 172585720 CTTCTTGCCTTGAAG----TTATTATGCTATGCAGATCTGAGAACATCTCTAATATGGAGAAAGCCACTGTTAAACCTTCCTGAGTTCTACCTTAAATATTTTCCCCA---------ATACATTTTTAGTGTCTTTAAAACT-AGGGTTAAAATGCTTTGTTTTC----TTCCATTTGTTATTTAGGAAAGGCCTACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29238713 181 - 170955103 CTTCTTGCCTTGCAG----TTATTATGCTATGCAGATCTGAGAACATCTCTAATATGGAGAAAGCCACTGTTAAACCTTCCTGAGTTCTACCTTAAATATTTTCCCCA---------ATACATTTTTAGTGTCTTTAAAACT-AGGGTTAAAATGCTTTGTTTTC----TTCCATTTGTTATTTAGGAAAGGCCTACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2245395 181 -   2996164 CTTCTTGCCTTGCAG----TTATTATGCTATGCAGATCTGAGAACATCTCTAATATGGAGAAAGCCACTGTTAAACCTTCCTGAGTTCTACCTTAAATATTTTCCCCA---------ATACATTTTTAGTGTCTTTAAAACT-AGGGTTAAAATGCTTTGTTTTC----TTCCATTTGTTATTTAGGAAAGGCCTACTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2122740 181 -   2157725 CTTCTTGCCTTGCTG----TTATTATGCTATGCAGATCTGAGAACATCTCTAATATGGAGAAAGCCACTGTTAAACCTTCCTGAGTTCTACCCTAAATATTTTCCCCA---------ATACATTTTTAGTGTCTTTAAAACT-AGGGTTAAAATGCTTTGCTTTC----TTCCATTTGTTATTTAGGAAAGGCCTACTT
i cerAty1.NW_012001495v1   C 0 I 382
s chlSab2.chr17             28544156 181 -  71996105 CTTCTTGCCTTGCGG----TTATTATGCTGTGCAGATCTGAGAACATCTCTAATATGGAGAAAGCCACTGTTAAACCTTCCTGAGTTCTACCCTAAATATTTTCCCCA---------ATACATTTTTAATGTCTTTAAAACT-AGGGTTAAAATGCTTTGTTTTC----TTCCATTTGTTATTTAGGAAAGGCCTACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2266646 181 +   2316924 CTTCTTGCCTTGCAG----TTATTATGCTATGCAGATCTGAGAACATCTCTAATATGGAGAAAGCCACTGTTAAACCTTCCTGAGTTCTACCCTAAATATTTGCCCCA---------ATACATTTTTAGTGTCTTTAAAACT-AGGGTTAAAATGCTTTGCTTTC----TTCCATTTGTTATTTAGGAAAGGCCTACTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2178482 181 -   3067355 CTTCTTGCCTTGCGG----TTATTATGCTCTGCAAATCTGAGGACATCTCTAATATGGAGAAAGCCACTGTTAAACCTTCTTGAGTTCTACCTTAAATATTTTCCCAA---------ATACATTTTTAGTGTCTTTAAAACT-GGGGTCAACATGCTTTGTTTTC----TTCCATTTGTTGTTTAGGAAAGGCTTGCTT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742            652671 189 +   2232465 CTTTTTGCCTTGCAGCTATTTATTATGCTACAAAGATCTGAGGACATTTTCAGTGTGGTGAGAACAGTTATTAAACCTTGTTGAATTCTACCTTAAGGATTTCCTCAA---------ATGCATTTTTAGTGTCCTTACAACT-AGAAGTAAAACACTTTTCTGTCTTCTTTCTATTTGTTTTTCAGGAAAGACTTGCTT
i otoGar3.GL873742         I 5092 C 0
s dasNov3.JH570037            320963 187 -    859332 CCTCTTAGCCTGCAG----TTATTATGCTTTGTGTATCTGAGAATGTGTCTAATGTGGAGAAAATCATTGTTAAACCATCTTTATTTCTACCTTAAGTCTTTCCCAAAAGCATGTGCATGTTTTTTTAGCATCTTTACAACTAAGGACTAAACAGCCTTG---TC----TTCCATCTGTTCTTCAACAAAAGCCCATT-
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=2201352.000000
s hg38.chr6_GL000254v2_alt    401674 415 +   4827813 GCTTGG-GGAAATAAGAA-CTTTAGATCACT-TTCCTTGAAAGGCAATCTCAGAATTGCTCATGCTTTACACAAAAGGTAGAGCACGCTTTCTCTTTCAAGTATAATGCGTCCCTTCTCTTCTACAGAATTTTTCAAAAGTTGACTGAA-GTATCCTTCATGCTGTAGCAT-------ACTGAGCAGTATATATTC----CCTGGAAATGCAAAGTCCAAATAAAACCTTTCTGTGGGTTTTCCAGTCCACTGTTCTGAGTATTCTTT-ATTCTGAGATTTTTGCATA-TAATTCTTAGGAAATCCTGATTTTTCACTGTGTCTAGATTTCACTCATGCCTCTGAAATGAATGTTTTTT-ACAGGACTTGAAGGTAGTATATACATTAGCCAAGGACG-GAGGATAATTTGAGAG---AGTCAGATGAACTGTAATG
s panTro5.chr6              29376290 416 + 175400573 GCTTGG-GGAAATAAGAA-CTTTAGATCACT-TTCCTAGAAAGGCAATCTCAGAATTGCTCATGCTTTACACAAAAGGTAGAGCACGCTTTCTCTTTCAAGTATAATGCGTCCCTTCTCTTCTACAGAATTTTTCAAAAGTTGACTGAA-GTATCCTTCATGCTGTAGCAT-------ACTGAGCAGTATATATTC----CCTGGAAATGCAAAGTCCAAATAAAACCTTTCTGTGGGTTTTCCAGTCCACTGTTCTGAGTATTCTTT-ATTCTGAGATTTTTGCATA-TAATTCTTAGGAAATCCTGATTTTTCACTGTGTCTAGATTTCACTCATGCCTCTGAAATGAATATTTTTTTACAGGCCTTGAAGGTAGTATATACATTAGCCAAGGACG-GAGGATAATTTGAGAG---AGTCAGATGAACTGTAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29621999 416 + 173848474 GCTTGG-GGAAATAAGAA-CTTTAGATCACT-TTCCTAGAAAGGCAATCTCAGAATTGCTCATGCTTTACACAAAAGATAGAGCACGCTTTCTCTTTCAAGTATAATGCGTCCCTTCTCTTCTACAGAATTTTTCAAAAGTTGACTGAA-GTATCCTTCATGCTGTAGCAT-------ACTGAGCAGTATATATTC----CCTGGAAATGCAAAGTCCAAATAAAACCTTTCTGTGGGTTTTCCAGTCCACTGTTCTGAGTATTCTTT-ATTCTGAGATTTTTGCATA-TAATTCTTAGGAAATCCTGATTTTTCACTGTGTCTAGATTTCACTCATGCCTCTGAAATGAATATTTTTTTACAGGCCTTGAAGGTAGTATATACATTAGCCAAGGACG-GAGGATAATTTGAGAG---AGTCAGATGAACTGTAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5418810 414 +   6154872 GCTTGG-GGAAATAAGAA-CTTTAGATCACT-TTCCTTGAAAGGCAATCTCAGAATTGCTCATGCTTTACACAAAAGGTAGAGCACGCTTTCTCTTTCAAGTATAATGCATCCCTTCTCTTCTACAGAATTTTTCAAAAGTTGACTGAA-GTATCCTTCATGCTGTAGCAT-------ACTGAGCAGTATATATTC----CCTGGAAATGCAAAGTCCAAATAAAACCTTTCTGTGGGTTTTCCAGTCCACTGTTCTGAGTATTCTTT-ATTCTGAGATTTTTGCATA-TAATTCTTAGGAAATCCTGA-TTTTCACTGTGTCTAGATTTCACTCATGCCTCTGAAATGAATATTTTTT-ACAGGCCTTGAAGGTAGTATATACATTAGCCAAGGACG-GAGGATAATTTGAGAG---AGTCAGATGAACTGTAATA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29577656 419 + 172585720 GCTTGGAGGAAATAAAAT-CTTTAGATCAAT-TTCCTTGAAAGGCAATCTCAGAATTGCTCATGCTTTGCACAAAAGGTAGAGCACGCTTTCTCTTTCAAGTATAATGTGTCCCTTCTCTTCTACAGAATTTTTCAGAAGTTGACTGAA-GTATCCTTCATGCCGTAGCAT-------ACTGAGCAGTATATATTC----CCCGGAAATGCAAAGTCCAAATAAAACCTTTCTGTGGGTTTTCCAGACCACTGTTCTGAGTATTCTTT-ATTCTGAGATATTTGCACATTAATTCTTAGGAAATCCTGATTTTTCACTGTGTCTAGATTTCACTTATGCCTCTGGAATGAATATTTTTT-ACAGGCCTTGAAGGTAGTATATACATTAGCCAAGGACA-GAGTATAACTTGAGAAAG-AGTCAGATGAACTGTAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29238894 418 - 170955103 GCTTGGGGGAAATAAAAT-CTTTAGATCAAT-TTCCTTGAAAGGCAATCTCAGAATTGCTCATGCTTTGCACAAAAGGTAGAGCACGCTTTCTCTTTCAAGTATAATGTGTCCCTTCTCTTCTACAGAATTTTTCAGAAGTTGACTGAA-GTATCCTTCATGCCGTAGCAT-------ACTGAGCAGTATATATTC----CCTGGAAATGCAAAGTCCAAATAAAACCTTTCTGTGAGTTTTCCAGACCACTGTTCTGAGTATTCTTT-ATTCTGAGATTTTTGCACA-TAATTCTTAGGAAATCCTGATTTTTCACTGTGTCTAGATTTCACTTATGCCTCTGGAATGAATATTTTTT-ACAGGCCTTGAAGGTAGTATATACATTAGCCAAGGACA-GAGTATAACTTGAGAAAG-AGTCAGATGAACTGTAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2245576 418 -   2996164 GCTTGGAGGAAATAAAAT-CTTTAGATCAAT-TTCCTTGAAAGGCAATCTCAGAATTGCTCATGCTTTGCACAAAAGGTAGAGCACGCTTTCTCTTTCAAGTATAATGTGTCCCTTCTCTTCTACAGAATTTTTCAGAAGTTGACTGAA-GTATCCTTCATGCCGTAGCAT-------ACTGAGCAGTATATATTC----CCTGGAAATGCAAAGTCCAAATAAAACCTTTCTGTGGGTTTTCCAGACCACTGTTCTGAGTATTCTTT-ATTGTGAGATTTTTGCACG-TAATTCTTAGGAAATCCTGATTTTTCACTGGGTCTAGATTTCACTTATGCCTCTGGAATGAATATTTTTT-ACAGGCCTTGAAGGTAGTATATACATTAGCCAAGGACA-GAGTATAACTTGAGAAAG-AGTCAGATGAACTGTAATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2123303 418 -   2157725 GCTTGGGGGAAATAAAAC-CTTTAGATCACT-TTCCTTGAAAGGCAATCTCAGAATCGCTCATGCTTTACACAAAAGGTAGAGCACGCTTTCTCTTTCAAGTATAATGTGTCCCTTCTCTTCTACAGAATTTTTCAGAAGTTGACTGAA-GTATCCTTCATGCTGTAGCAT-------ACCGAGCAGTATATATTC----CCTGGAAATGCAAAGTCCAAATAAAACCTTTCTGTGGGCTTTCCAGACCACTGTTCTGAGTAATCTTT-ATTCTGAGATTTTTGCACG-TAATTCTTAGGAAATCCTGATTTTTCACTGTGTCTAGATTTCACTCATGCCTCTGAAATGAATATTTTTT-ACAGGCCTTGAAAGTAGTATATACATTAGCTAAGGACA-GAGTATAACTTGAGAAAG-AGTCAGATGAACTGTAATG
i cerAty1.NW_012001495v1   I 382 C 0
s chlSab2.chr17             28544337 418 -  71996105 GCTTGGGGGAAATAAAAC-CTTTAGATCACT-TTCCTTGAAAGGCAATCTCAGAATTGCTCGTGCTTTACACAAAAGGTAGAGCACGCTTTCTCTTTCAAGTATAATGTGTCCCTTCTCTTCTACAGAATTTTTCAGAAGTCGACTGAA-GTATCCTTCATGCTGTAGCAT-------ACTGAGCAGTATATATTC----CCTGGAAATGCAAAGTCCAAATAAAACCTTTCTGTGGGCTTTCCAGACCACTGTTCTGAGTAATCTTT-ATTCTGAGATTTTTGCACA-TAATTCTTAGGAAATCCTGATTTTTCACTGTGTCTAGATTTCACTCATGCCTCTGAAATGAATATTTTTT-ACAGGCCTTGAAGGTAGTATATACATTAGCAAAGGACA-GAGTATAAATTGAGAAAG-AGTCAGATGAACTGTAATG
i chlSab2.chr17            C 0 I 275
s manLeu1.NW_012104165v1     2266827 418 +   2316924 GCTTGGGGGAAATAAAAC-CTTTAGATCACT-TTCCTTGAAAGGCAATCTCAGAATCGCTCATGCTTTACACAAAAGGTAGAGCACGCTTTCTCTTTCAAGTATAATGTGTCCCTTCTCTTCTACAGAATTTTTCAGAAGTTGACTGAA-GTATCCTTCATGCTGTAGCAT-------ACTGAGCAGTATATATTC----CCTGGAAATGCAAAGTCCAAATAAAACCTTTCTGTGGGCTTTCCAGACCACTGTTCTGAGTAATCTTT-ATTCTGAGATTTTTGCACG-TAATTCTTAGGAAATCCTGATTTTTCACTGTGTCTAGATTTCACTCATGCTTCTGAAATGAATATTTTTT-ACAGGCCTTGAAGGTAGTATATACATTAGCTAAGGACA-GAGTATAACTTGAGAAAG-AGTCAGATGAACTGTAATG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2178663 410 -   3067355 GCTTGG-GGAAATAAAAG-CTTTAGATCACT-TTTCTTGAAAGGCAATCTCAGAATTGCTGGTGGTTTACTCAAAAGGTAGAGCACACTTTCACTTTCCAGTGTAATACATGCATTTCCTTCTATAGTACTTTTCAAAAGTTGACTGAA-GTATCCTTCATGCTGTAGCAT-------ACTAAACAGTATATACTC----CCTGGAAATATGAAGTCCAAATAAAACCCTTCTGTGGATTTTCCAGACCACCGTTCTCAGTATTCTTT-ATTCTGAGATTTTTGCATT-TAATTCTTAGGAAATCCTGATTTTTCACTGTGTCTAGATTTCATTCATGCCTCTGAAATGAATATTTTTT-ACAGGTCTTGAAGGTAG----TACATTAGCCAAGGACA-GAGGAT-ATTTGAGAA---AGTCAGACGAACCGTGATG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742            652860 393 +   2232465 GGTTGG-GGAAATAAGAA-ACATTTATCACC-TTCTTGAAAAGACA--TTCAGGGTTACTTATACTTTACATTAATGGTAGAGAACAATTTCACCTTCAAATATAAAATGGGCCTTCTCATTTATGGAGCTTCTCAAAAGTTAATTAAA-GTATCTTTCATGTTGGAGTAT-------ACTAAACA-TATAT---------------ATGTAAAGTCCAAATAAAACATTGCTGTAGGTTTTCCCCATCACTACTCTCAGTATTTTTTAATCCTGAGATTTTGGTATA-TAATTATTA--AAGTCCAGGCTTTTCACAGTGTCTAGATGTCACTTGAACTTCTGACATGAGTAATCTTT-ATAGGCCTAGAAGGTAGCATACACATTAACCCAGAAGA-GAGAATAAT----------GGTCAGAACAACTATAACC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            321150 423 -    859332 GTTTGGAAAACACGAAATGTTTTTGATCAATAGTCTTTAAAAGGCAAT-GCAGAATGGCTTATAATTTACATCAAGTGTGGAGCATACTTTCACCTTCAAGTATAAGATCTG-ATTTTATTTCATCAAGCTTCCCAAATGTTAATCAAATGTATCCTTCATACTGGAGTATTGAAATAGCCAAAAATTGTGTAAACAAAGTCTGAAATCATGCAGTAGAAGTAAAATATTTCTATGAGTTTCCTTCATGAATACTCTG---TTTCTTT-ATCTAGAGAATTTTCGATC-CTTCCTTTAGAAAGTCCTGATTTTTCA--GAGTTGGAATGGCACTAA--CTCCTGAAATGATGAATCTTC-ACAGTCTGTAGCAGTCATAT-TAATTTAGCTCAGGAAACAAGGATATATTAGGACAGCAACCAGAACATGCTTATC-
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=554833.000000
s hg38.chr6_GL000254v2_alt    402089 95 +   4827813 GGTTTTTATAGCAAAGCTTTTGACAAAAATCGTTCTGTGTTTTGCCTTCAAAACTAGAAATTACTATATACTTCTGTATATAAGACTAAGTTAGA
s panTro5.chr6              29376706 95 + 175400573 GGTTTTTATAGCAAAGCTTTTGACAAAAATCGTTCTGTGTTTTGCCTTCAAAACTAGAAATTACTATATACTTCTGTATATAAGACTAAGTTAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29622415 95 + 173848474 GGTTTTTATAGCAAAGCTTTTGACAAAAATCGTTCTGTGTTTTGCCTTCAAAACTAGAAATTACTATATACTTCTGTATATAAGACTAAGTTAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5419224 95 +   6154872 GGTTTTTATAGCAAAGCTTTTGACAAAAATCATTCTGTGTTTTGCCTTCAAAACTAGAAATTACTATATACTTCTGTATATAAGACTAAGTTAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29578075 94 + 172585720 AGTTTTTATAGCAAAGCTTTTGACAAAAATCTTTCTGGGTTTTGCCCT-AAAACTAGAAATTATTATATACTTCTGTATGTAAGACTAAGTTAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29239312 95 - 170955103 AGTTTTTATAGCAAAGCTTTTGACAAAAATCTTTCTGGGTTTTGCCCTCAAAACTAGAAATTATTATATACTTCTGTATGTAAGACTAAGTTAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2245994 95 -   2996164 AGTTTTTATAGCAAAGCTTTTGACAAAAATCTTTCTGGGTTTTGCCCTCAAAACTAGAAATTATTATATACTTCTGTATGTAAGACTAAGTTAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2123721 95 -   2157725 AGTTTTTATAGCAAAGCTTTTGACAAAAATCTTTCTGGGTTTTGCCCTCAAAACTAGAAATTACTATATACTTCTGTATGTAAGACTAAGTTAGA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28545030 95 -  71996105 AGTTTTTATAGCAAAGCTTTTGACAAAAATCTTTCTGGGTTTTGCCCTCAAAACTAGAAATTACTATATACTTCTGTATGTAAGACTAAGTTAGA
i chlSab2.chr17            I 275 C 0
s manLeu1.NW_012104165v1     2267245 95 +   2316924 AGTTTTTATAGCAAAGCTTTTGACAAAAATCTTTCTGGGTTTTGCCCTCAAAACTAGAAATTACTATATACTTCTGTATGTAAGACTAAGTTAGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2179073 95 -   3067355 AGTTTCTACAGCAAAGCTTTTGACACAAATCTTTCTGGGTTTTGCCCTCAAAACTAGAAATTACTATATATTTCTGTATCTAAGACTAAGTTAGA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742            653253 95 +   2232465 AGTCTCTACAGCTATGCTTTTGATATAAATCTCTCTAGATTTTACCCTCAAAACTAGAAACTAATATATTCTTCTGTATGTAAGAATAAGTTAGA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            321573 95 -    859332 AGTATTTACAGATAAGCATTTGACACAAATATTGCCACATTCACCACCTAAAATAAAAAATTTCTGTGTTCTTTTGAATGGAAGAATATCTTAGA
i dasNov3.JH570037         C 0 I 414
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1415574.000000
s hg38.chr6_GL000254v2_alt    402184 270 +   4827813 CAAACTATACCTTAACTAATAAAAATGATCAAAGCTATTGTCTAACACCACAGAATTAGGTCATGTGTTTGTGTGTGCATGTGTATAAAATTTGAAAACA--TTTTTCTGGCAATCAACCAGAAATATGCCAATTTTTAAAGTTACTTAAAT-TTTTTTCCAAACTAGATATATAAAAGTTCAATGATTTGAGGATCTGTATCAGCACCAGATGATCTGTTAT--TTTTCAGCAAGTGTATCTGGTTTGCAGTTGATTCTTGTTTGAACTAACAT
s panTro5.chr6              29376801 270 + 175400573 CAAACTATACCTTAACTAATAAAAATGATCAAAGCTATTGTCTAACACCACAGAATTAGGTCATGTGTTTGTGTGTGCATGTGTATAAAATTTGAAAACA--TTTTTCTGGCAATCAACCAGAAATATGCCAATTTTTAAAGTTACTTAAAT-TTTTTTCCAAACTAGATATATAAAATTTCAATGATTTGAGGATCTGTATCAGCACCAGATGATCTGTTAT--TTTTCAGCAAGTGTATCTGGTTTGCAGTTGATTCTTGTTTGAAATAACAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29622510 270 + 173848474 CAAACTATACCTTAACTAATAAAAATGATCAAAGCTATTGTCTAACACCACAGAATTAGGTCATGTGTTTGTGTGTGCATGTGTATAAAATTTGAAAACA--TTTTTCTGGCAATCAACCAGAAATATGCCAATTTTTAAAGTTACTTAAAT-TTTTTTCCAAACTAGATATATAAAATTTCAATGATTTGAGGATCTGTATCAGCACCAGATGATCTGTTAT--TTTTCAGCAAGTGTATCTGGTTTGCAGTTGATTCTTGTTTGAAATAACAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5419319 270 +   6154872 CAAACTATACCTTAACTAATAAAAATGATCAAAGCTATTGTCTAACACCACAGAATTAGGTCATGTGTTTGTGTGTGCATGTGTATAAAATTTGAAAACA--TTTTTCTGGCAATCAACCAGAAATATGCCAATTTTTAAAGTTACTTAAAT-TTTTTTCCAAACTAGATATATAAGAGTTCAATGATTTGAGGATCTGTATCAGCACCAGATGATCTGTTAT--TTTTCAGCAAGTGTATCTGGTTTGCAGTTGATTCTTGTTTGAAATAACAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29578169 271 + 172585720 CGAAGGATATCTTAACTAATAAAAATGATCAAAGCTATTGTTTAACACTACAGAATTAGGTCATGTGTTTGTGTGTGCATGTGTATAAAATTTGAAAACATTTTTTTCTGGCAGTCAACCAGAAATAGGCCAA-TTTTAAAGTTACTTAAAA-TTTTTTCCAAACTGAATATATAAAAGTTCAATGATTTGAGGATCCATACCAGCACCAGATGATCTGTTAT--TTTTCAGCAAGTGTATCTGGTTTGCAGTTGATTCTTGTTTGAAGTAACAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29239407 271 - 170955103 CAAAGGATATCTTAACTAATAAAAATGATCAAAGCTATTGTTTAACACTACAGAATTAGGTCATGTGTTTGTGTGTGCATGTGTATAAAATTTGAAAACATTTTTTTCTGGCAGTCAACCAGAAATAGGCCAA-TTTTAAAGTTACTTAAAA-TGTTTTCCAAACTGAATATATAAAAGTTCAATGATTTGAGGATCCATACCAGCACCAGATGATCTGTTAT--TTTTCAGCAAGTGTATCTGGTTTGCAGTTGATTCTTGTTTGAAGTAACAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2246089 271 -   2996164 CAAAGGATATCTTAACTAATAAAAATGATCAAAGCTATTGTTTAACACTACAGAATTAGGTCATGTGTTTGTGTGTGCATGTGTATAAAATTTGAAAACATTTTTTTCTGGCAGTCAACCAGAAATAGGCCAA-TTTTAAAGTTACTTAAAA-TGTTTTCCAAACTGAATATATAAAAGTTCAATGATTTGAGGATCCATACCAGCACCAGATGATCTGTTAT--TTTTCAGCAAGTGTATCTGGTTTGCAGTTGATTCTTGTTTGAAGTAACAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2123816 269 -   2157725 CAAAGGATACCTCAACTAATAAAAACGATCAAAGCTATTGTTTAACACTACAGAATTAGGTCATGTGATTGTGTGTGCATGTGTATAAAATTTGAAAACA--TTTTTCTGGCAGTCAACCAGAAATAGGCCAA-TTTTAAAGTTACTTAATT-TTTTTTCCAAACTGAATATATAAAAGTTCAATGATTTGAGGATCTGTGCCAGCACCAGATGATCTGTTAT--TTTTCAACAAGTGTATCTGGTTTGCAGTTGATTCTTGTTTGAAATAACAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28545125 269 -  71996105 CAAAGGATACCTCAACTAATAAAAATGAGCAAAGCTATTGTTTAACACTACAGAATTAGGTCATGTGTTTGTGTGTGCATGTGTATAAAATTTGAAAACA--TTTTTCTGGCAGTCAACCAGAAATAGGCCAA-TTTTAAAGTTACTTAAAA-TTTTTTCCACACTAAATATATAAAAGTTCAATGATTTGAGGATCTGTACCAGCACCAGATGATCTGTTAT--TTTTCAACAAGTGTATCTGGTTTGCAGTTGATTCTTGTTTGAAATAGCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2267340 269 +   2316924 CAAAGGATACCTCAACTAATAAAAATGATCAAAGCTATTGTTTAACACTACAGAATTACATCATGTGATTGTGTGTGCATGTGTATAAAATTTGAAAACA--TTTTTCTGGCAGTCAACCAGAAATAGGCCAA-TTTTAAAGTTACTTAATT-TTTTTTCCAAACTGAATATATAAAAGTTCAATGATTTGAGGATCTGTACCAGCACCAGATGATCTGTTAT--TTTTCAACAAGTGTATCTGGTTTGCAGTTGATTCTTGTTTGAAATAACAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2179168 247 -   3067355 CAAAGGATACTTA----AATAAAAATTATCAAAGCTATCATTTAACATCACAGAATTAGGTCATGTCTTTGTGTGTGCATGTGTATAAAATTTGAAAATA--TTTTTCTGGCAATCAACCAGAAATATGCCAATTTTTAAAGTTACTTAAAATTTTTTTCCAAACTGAATATACAGAAGTTCAATGATCTGAGGATCTGTACCAGCACCAGATGATCTGTTAT----------------------TTTGCAGTTGATTCTTGTTTGGAATACCAT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742            653348 250 +   2232465 CAAAGGACATTTTAAT-------GATGATCAAAGTTACTATTTAAAATCATAGAATTA------GTGTATGTGTAGATATGTGTATTAAGTTTAAAAACA---TTTTCTGGCAGT----CAGAAATTTGCTAAGTTTTAAAGTTAT---AAA-TTTTTTTCAAACTAAATATGTAAAAGGCCACTGGTCTCATGATCTGGATCAGCAGTAAAT-ATCTGTTATTTTTTTCAAAAATTGTGTCTAAGTTGCAGTTCATTCTTGTTTGGAATAACAA
i otoGar3.GL873742         C 0 T 4752
s dasNov3.JH570037            322082 240 -    859332 CAAAGAAGATCAAAAATAATAAAATTGATCAATA-TATTATTTAACATCATGGGATT------TTAATTTTCATGGCTTTGTGCATAAAATTTCAAAACA--TTTTT------------AGGAAATCAGTCAATTTTGAGAGCTACTTAGAA-TTCTTTCCAAACAAAATATACCAAAGTC-------TCTAAGAACTGGATCA-TACCAGGTGATCTGTCAT--TTTTCA--AAATGGATCTAGGTTGCAGCTGGTTTTTG-TTGAGGTAATAT
i dasNov3.JH570037         I 414 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1647786.000000
s hg38.chr6_GL000254v2_alt    402454 303 +   4827813 GAGGTTTTCCTTCCAATTATTGGCTTAGATCTTGATCATACCAGAAGTTATGCCAGAAAAGTCCAAATGACCTTTTGTTTTTCTTACAAGTATTTACTTCTTCACTACACAACACCGTGTTGAACTCTCAACATATTAATTCAACACCAAGTAAATATAAAATCTATTCATTTGCTTTCATAAATTGTAACTAATTTCGTGACAAAGTTTTAAGTTTTGGGGTGTGAGTCCTAGAACTAAGTTTTAGCACTTCCAACTTTTAATGATACAGGTTTTGTACATCATTTGCATTTAACATTTACA
s panTro5.chr6              29377071 303 + 175400573 GAGGTTTTCCTTCCAATTATTGGCTTAGATCTTGATCATACCAGAAGTTATGCCAGAAAAGTCCAAATGACCTTTTGTTTTTCTTACAAGTATTTACTTCTTCACTACACAACACCGTGTTGAACTCTCAACATATTAATTCAACACCAAGTAAATATAAAATCTATTCATTTGCTCTCATAAATTGTAACTAATTTCATGACAAAGTTTTAAGTTTTGGGGTGTGAGTCCTAGAACTAAGTTTTAGCACTTCCAACTTTTAATGATACAGGTTTTGTACATCATTTGCATTTAACATTTACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29622780 303 + 173848474 GAGGTTTTCCTTCCAATTATTGGCTTAGATCTTGATCATACCAGAAGTTATGCCAGAAAAGTCCAAATGACCTTTTGTTTTTCTTACAAGTATTTACTTCTTCACTACACAACACCGTGTTGAACTCTCAACATATTAATTCAACACCAAGTAAATATAAAATCTATTCATTTGCTCTCATAAATTGTAACTAATTTCATGACAAAGTTTTAAGTTTTGGGGTGTGAGTCCTAGAACTAAGTTTTAGCACTTCCAACTTTTAATGATACAGGTTTTGTACATCATTTGCATTTAACATTTACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5419589 303 +   6154872 GAGGTTTTCCTTCCAATTATTGGCTTAGATCTTGATCATACCAGAAGTTATGCCAGAAAAGTCCAAATGACCTTTTGTTTTTCTTACAAGTATTTACTTCTTCACTACACAACACCGTGTTGAACTCTCAACATATTAATTCAACACCAAGTAAATATAAAATCTATTCATTTGCTCTCATAAATTGTAACTAATTTCATGACAAAGTTTTAAGTTTTGGGGTGTGAGTCCTAGAACTAAGTTTTAGCACTTCCAACTTTTAATGATACAGGTTTTGTACATCATTTGCATTTAACATTTACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29578440 290 + 172585720 GAGGTTTTCCTTCCAGTTATTGACTTAGATCTTGATCATACCAGAAGTTATGCCAGAAAAGTCCAAATGATCTTTTGTTTTTCTTACAAGTATTTACTTCTTCACTACACAACACCGTGTTGAACTCTCAACATATTAGTTCAACACCAAGTAAATATAAAATCTATTCATTTGCTCTTATACATTGTAACTAATTTCATGACAAAGTTTTAAGTTTTGGGGTGTGAGTCCTAGAACTAAGCTTTAGCACTTTCAACTTTTAATAATACAGGTTTTG-------------TTCAACATTTACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29239678 290 - 170955103 GAGGTTTTCCTTCCAATTATTGACTTAGATCTTGATCATACCAGAAGTTATGCCAGAAAAGTCCAAATGATCTTTTGTTTTTCTTACAAGTATTTACTTCTTCACTACACAACACCGTGTTGAACTCTCAACATATTAGTTCAACACCAAGTAAATATAAAATCTATTCATTTGCTCTTATACATTGTAACTAATTTCATGACAAAGTTTTAAGTTTTGGGGTGTGAGTCCTAGAACTAAGCTTTAGCACTTTCAACTTTTAATAATACAGGTTTTG-------------TTCAACATTTACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2246360 290 -   2996164 GAGGTTTTCCTTCCAATTATTGACTTAGATCTTGATCATACCAGAAGTTATGCCAGAAAAGTCCAAATGATCTTTTGTTTTTCTTACAAGTATTTACTTCTTCACTACACAACACCGTGTTGAACTCTCAACATATTAGTTCAACACCAAGTAAATATAAAATCTATTCATTTGCTCTTATACATTGTAACTAATTTCATGACAAAGTTTTAAGTTTTGGGGTGTGAGTCCTAGAACTAAGCTTTAGCACTTTCAACTTTTAATAATACAGGTTTTG-------------TTCAACATTTACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2124085 290 -   2157725 GAAGTTTTCCTTCTAATTATTGACTTAGATCTTGATCATACCAGAAGTTATGACAGAAAAGTCCAAATGATCTTTTGTTTTTCTTACAAGTATTTACTTCTTCACTACACAACACCGTGCTGAACTCTCAACATATTAATTCAACACCAAGTAAATATAAAATCTATTCATTTACTCTCATAAATTGCAACCAATTTCATGACAAAGTTTTAAGTTTTGGGGTGTGAGTCCTAGAATTAAGCTTTAGCACTTTCAACTTTTAATAATACAGGTTTTG-------------TTCAACATTTACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28545394 290 -  71996105 GAGGTTTTCCTTCCAATTATTGACTTAGATCTTGATCATACCAGAAGTTATGACAGAAAAGTCCAAATGACCTTTTGTTTTTCTTACAAGTATTTACTTCTTCACTACACAACACCGTGTTGAACTCTCAACATATTAATTCAACACCAAGTAAATATAAAATCTATTCATTTGCTCTCATAAATTATAACTAATTTCATGACAAAGTTTTAAGTTTTGGGGTGTGAGTCCTAGAATTAAGCTTTAGCACTTTCAACTTTTAATAATACAGGTTTTG-------------TTCAACATTTGTA
i chlSab2.chr17            C 0 I 30
s manLeu1.NW_012104165v1     2267609 290 +   2316924 GAAGTTTTCCTTCTAATTATTGACTTAGATCTTGATCATACCAGAAGTTATGACAGAAAAGTCCAAATGATCTTTTGTTTTTCTTACAAGTATTTACTTCTTCACTACACAACACCGTGCTGAACTCTCAACATATTAATTCAACACCAAGTAAATATAAAATCTATTCATTTACTCTCATAAATTGCAACCAATTTCATGACAAAGTTTTAAGTTTTGGGGTGTGAGTCCTAGAATTAAGCTTTAGCACTTTCAACTTTTAATAATACAGGTTTTG-------------TTCAACATTTACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2179415 303 -   3067355 GAGGTTTTCCTGCCAATTATTGGCTTAAATCTTGATCATACCAGAAGATATGCCAGGAAAATCCAAATGAGCTTTTGTTTTTCTTACAAGTGTTTACTTCTTCACTGCACAACATCATGCTGAACTCTCAACATATTAATTCAACACCAAATAAATATAAAATCCATTAATTTGCTCTCATAAGTTATAACTAATTTCATGACAAAGTTTTAAGTTTTGGGGTGTGAGTCCTAGAACTAAGTTTTAGCGCTTTCAACTTTTAATGATACAGATTTTGAATACCATTTGCATTCAACATTTACA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1723622 283 -   2232465 GAGGAACTCTCATTATTTATTGCCAAGGAGAGCAATGATACCAGCAG--ATGTCAGCAAAGTCTAAATGACTT----TTTTTTTTACAAGTGTTTATTTCTTCACTATACAACATCATCTTGAATTCTTAACATATTAGTTCAACATCAAATAAACATGAAAACTATTAATTTTCTTTCATAAATTGTAACTAACTACAT----AAACTTCTAACTTTGGGGTG-GATTCCTAGTAC---------GTATTTCCAACTTTTAATGATACAGAATTTGAGGGTCATTTGCATTAAAAATTTATG
i otoGar3.GL873742         I 5767 C 0
s dasNov3.JH570037            322322 293 -    859332 GAACTTTTTCTTCAGATAATTTGTTTAGAACTTCGTCATGCCAAACAACATGCTGAAAAA--TCAAATGACATTAT-TTTTTCTTACAAGTCTTCATTTCTTCTGGACATAATGTGAGGTTGAATTCTCAGCATATTAATTCAACACCAGCT--ACTTTAAATCCATTAAATGGTCCTCATAAATTTTAAGTAACTT-ATGGCAAGAGTTTGAGTTTT-GAATGTGACCCCTAGAACCAAGTCTTAGGACTTTCGCCACT---TGATATGGAGGTTGAACACTATTTGCATCTAAACTTTACA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=18612.000000
s hg38.chr6_GL000254v2_alt    402757 3 +   4827813 TCA
s panTro5.chr6              29377374 3 + 175400573 TCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29623083 3 + 173848474 TCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5419892 3 +   6154872 TCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29578730 3 + 172585720 TCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29239968 3 - 170955103 TCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2246650 3 -   2996164 TCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2124375 3 -   2157725 TCA
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2267899 3 +   2316924 TCA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2179718 3 -   3067355 TCA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1723905 3 -   2232465 TCA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            322615 3 -    859332 TCA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             28545684 30 -  71996105 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=2864765.000000
s hg38.chr6_GL000254v2_alt    402760 563 +   4827813 GT-AAAAAGAC----ATATTGTTTGTTGAGGTAATCAAGTTGCTTTTTGTTCCAG-AAATGCAAATTATTTTTTTCTCATACTGATTCTGATTCTAACACAGTTAGTTCCAAAAGGCATTCCTGGCTGTTCCAAATTGTGCACGGAAATGCTTCCAGGTTGTGTTTCATTATTAATATCACTTCCTTGTTATCTCACTGATTC-GAAGACTCATTATTATAGTATGTAAAAGGAAAGTATCAGAAACTTTTTCATACTTTTTGTCCCACTATTCCACTCATTTCAAAATTTAATAATAAATTATTTAATTAAAAATACAAAATCACTGCATACTTATTTGTTAAAAAAGAATTACACTGAATTTTTAAGAAGCAATAGTATCTACATAAATTGGGGTTGATAAGCTTATGAGACTCAT-----GATTATTCCAAAGTATAATGTGCTTCACATTGAATGCCCA--------------GTGTAGCCACACTG---------------CCCATTTAGAC--------------------------------------------------------------------------------------------------------------------------TTGGGACAACATGCAGAGAGTGATGGAATGTTTCTCAGGTGACTCTG-ACAGGAGGCTCATTGATGAGTGGTTGCTATACTATTTTTA-
s panTro5.chr6              29377377 563 + 175400573 GT-AAAAAGAC----ATATTGTTTGTTGAGGTAATCAAGTTGCTTTTTGTTCCAG-AAATGCAAATTATTTTTTTCTCATACTGATTCTGATTCTAACACAGTTAGTTCCAAAAGGCATTCCTGGCTGTTCCAAATTGTGCACGGAAATGCTTCCAGGTTGTGTTTCATTATTAATATCACTTCCTTGTTATCTCACTGATTT-GAAGACTCATTATTATAGTATGTAAAAGGAAAGTATCAGAAACTTTTTCATACTTTTTGTCCCACTATTCCACTCATTTCAAAATTTAATAATAAATTATTTAATTAAAAATACAAAATCACTGCATACTTATTTGTTAAAAAAGAATTACACTGAATTTTTAAGAAGCAATAGTATCTACATAAATTGGGGTTGATAAGCTTATGAGACTCAT-----GATTATTCCAAAGTATAATGTGCTTCACATTGAATGCCCA--------------GTGTAGCCACACTG---------------CCCATTTAGAC--------------------------------------------------------------------------------------------------------------------------TTGGGACAACATGCAGAGAGTGATGGAATGTTTCTCAGGTGACTCTG-ACAGGAGGCTCATTGATGAGTGGTTGCTATACTATTTTTA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29623086 563 + 173848474 GT-AAAAAGAC----ATATTGTTTGTTGAGGTAATCAAGTTGCTTTTTGTTCCAG-AAATGCAAATTATTTTTTTCTCATACTGATTCTGATTCTAACACAGTTAGTTCCAAAAGGCATTCCTGGCTGTTCCAAATTGTGCACGGAAATGCTTCCAGGTTGTGTTTCATTATTAATATCACTTCCTTGTTATCTCACTGATTT-GAAGACTCATTATTATAGTATGTAAAAGGAAAGTATCAGAAACTTTTTCATACTTTTTGTCCCACTATTCCACTCATTTCAAAATTTAATAATAAATTATTTAATTAAAAATACAAAATCACTGCATACTTATTTGTTAAAAAAGAATTACACTGAATTTTTAAGAAGCAATAGTATCTACATAAATTGGGGTTGATAAGCTTATGAGACTCAT-----GATTATTCCAAAGTATAATGTGCTTCACATTGAATGCCCA--------------GTGTAGCCACACTG---------------CCCATTTAGAC--------------------------------------------------------------------------------------------------------------------------TTGGGACAACATGCAGAGAGTGATGGAATGTTTCTCAGGTGACTCTG-ACAGGAGGCTCATTGATGAGTGGTTGCTATACTATTTTTA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5419895 563 +   6154872 GT-AAAAAGAC----ATATTGTTTGTTGAGGTAATCAAGTTGCTTTTTGTTCCAG-AAATGCAAATTATTTTTTTCTCATACTGATTCTGATTCTAACACAGTTAGTTCCAAAAGGCATTCCTGGCTGTTCCAAATTGTGCACGGAAATGCTTCCAGGTTGTGTTTCATTGTTAATATCACTTCCTTGTTATCTCACTGATTC-GAAGACTCATTATTATAGTATGTAAAAAGAAAGTATCAGAAACTTTTTCATACTTTTTGTCCCACTATTCCACTCATTTCAAAATTTAATAATAAATTATTTAATTAAAAATACAAAATCACTGCATACTTATTTGTTAAAAAAGAATTACACTGAATTTTtaagaagcaatagtatctacataaattggggttgataaacttatgagactcat-----gattcttccaaagTATAATGTGCTTCACATTGAATGCCCA--------------GTGTAGCCACACTG---------------CCCATTTAGAC--------------------------------------------------------------------------------------------------------------------------TTGGGACAACACGCAGAGAGTGATGGAATGTTTCTCAGGTGACTCTG-ACAGGAGGCTCATTGATGAGTGGTTGCCATACTATTTTTA-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29578733 559 + 172585720 GT-AAAAATACACTTATATTGTTTGTGGAGGTAATCAAGTTTCCTTTTGTTCCAG-AAATGCAAATT-TTTTTTTCTCATA------CTGATTCTAACACAGTCAGTTCCAAAAGGCATTCCTGGCTGTTCCAAATTGTGCACGGAAATGCTTCCAGGTTGTATTTCATTACTAATGTCACTTTCTTGTTATCTCACTGATTC-GAAGACTTCTTATTGTAGTATGTAAAAGTAAAGTGTCAGACACTTTTTCATACTTTTTGTCCCACTGTTCCACTCATTTCAAAATTTAATAATAAATTATTTAATT-AAAATACAAAATCACTGCATATTTATTTGTTAAAAAAGAATTACACTGAATTTTTGAGAAGCAATAGTATCTACATAAATTGGGGTTGATAAACTTATGAGACTCAT-----GATTCTTCCAAAGTATAATGTTCTTCCCATTGAATGCCCA--------------GTATAGCCACAGTG---------------CCCATTTAAAC--------------------------------------------------------------------------------------------------------------------------TTGGGACAACTCACAGAGAGTGATGGAATGTTTCTCAGGTGACTCTG-ACAAGAGGCTCATTGATGAGTGGTTGCCATACTATTTTTA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29239971 559 - 170955103 GT-AAAAATACACTTATATTGTTTGTGGAGGTAATCAAGTTTCCTTTTGTTCCAG-AAATGCAAATT-TTTTTTTCTCATA------CTGATTCTAACACAGTCAGTTCCAAAAGGCATTCCTGGCTGTTCCAAATTGTGCACGGAAATGCTTCCAGGTTGTATTTCATTACTAATGTCACTTTCTTGTTATCTCACTGATTC-GAAGACTTCTTATTGTAGTATGTAAAAGTAAAGTGTCAGACACTTTTTCATACTTTTTGTCCCACTGTTCCACTCATTTCAAAATTTAATAATAAATTATTTAATT-AAAATACAAAATCACTGCATATTTATTTGTTAAAAAAGAATTACACTGAATTTTTGAGAAGCAATAGTATCTACATAAATTGGGGTTGATAAACTTATGAGACTCAT-----GATTCTTCCAAAGTATAATGTTCTTCCCATTGAATGCCCA--------------GTATAGCCACAGTG---------------CCCATTTAAAC--------------------------------------------------------------------------------------------------------------------------TTGGGACAACTCACAGAGAGTGATGGAATGTTTCTCAGGTGACTCTG-ACAAGAGGCTCATTGATGAGTGGTTGCCATACTATTTTTA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2246653 559 -   2996164 GT-AAAAATACACTTATATTGTTTGTGGAGGTAATCAAGTTTCCTTTTGTTCCAG-AAATGCAAATT-TTTTTTTCTCATA------CTGATTCTAACACAGTCAGTTCCAAAAGGCATTCCTGGCTGTTCCAAATTGTGCACGGAAATGCTTCCAGGTTGTATTTCATTACTAATGTCACTTTCTTGTTATCTCACTGATTC-GAAGACTTCTTATTGTAGTATGTTAAAGTAAAGTGTCAGACACTTTTTCATACTTTTTGTCCCACTGTTCCACTCATTTCAAAATTTAATAATAAATTATTTAATT-AAAATACAAAATCACTGCATATTTATTTGTTAAAAAAGAATTACACTGAATTTTTGAGAAGCAATAGTATCTACATAAATTGGGGTTGATAAACTTATGAGACTCAT-----GATTCTTCCAAAGTATAATGTTCTTCCCATTGAATGCCCA--------------GTATAGCCACAGTG---------------CCCATTTAAAC--------------------------------------------------------------------------------------------------------------------------TTGGGACAACTCACAGAGAGTGATGGAATGTTTCTCAGGTGACTCTG-ACAAGAGGCTCATTGATGAGTGGTTGCCATACTATTTTTA-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2124378 560 -   2157725 GT-AAAAAGACACTTATATTGTTTGTGGAGGTAATCAAGTTTCCTTTTGTTCCAG-AAATGTAAATTATTTTTTTCTCATA------CTGATTCTAACACAGTCAGTTCCAAAAGGCATTCCTGGCTGTTCTAAATTGTGTACGGAAATGCTTCCAGGTTGTATTTAATTACTAATGTCACTTTCTTGTTATCTCACTGATTT-GAAGACTTATTATTATAGTATGTAAAAGGAAAGTGTCTGACACTTTTTCATACTTTTTGTCCCACTATTCCACTCATTTCAAAATTTAATAATAAATTATTTAATT-AAAATACAAAATCACTGCATATTTATTTGTTAAAAAAGAATTACACTGAATTTTTAAGAAGAAATAGTATCTACATAAATTGGGGTTGATAAATTTATGAGATTCAT-----GATTCTTCCAAAGTATAACGTTCTTCCCATTGAATGCCCA--------------GTGTAGCCACAGTG---------------CCCATTTAAAC--------------------------------------------------------------------------------------------------------------------------TTGGGATAACTCGCAGAGAGTGATGGAATGTTTCTCAGGTGACTCTG-ACAGGAGGCTCATTGATGAGTGGTTGCCATACTATTTTTA-
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28545714 557 -  71996105 GT-AAAAAGACACTTATATTGTTTGTGCAGGTAATCAAGTTTCCTTTTGTTCCAG-AAATGCAAATTATTTTTTTCTCATA------CTGATTCTAACACAGTCAGTTCCAAAAGGCATTCCTGGCTGTTCCAAATTGTGCACGGAAATGCTTCCAGGTTGTATTTCATTACTAATGTCACTTTCTTGTTATCTCACTGATTC-GAAGAC---TTATTATAGTATGTAAAAGGAAAGTGTCAGACACTTTTTCATACTTTTGGTCCCACTATTCCACTCATTTCAAAATTTAATAATAAATTATTTAATT-AAAATACAAAATCACTGCATATTTATTTGTTAAAAAAGAATTACACTGAATTTTTGAGAAGCAATAGTATCTACATAAATTGGGGTTGATAAACTTATGAGACTCAT-----GATTCTTCCAGAGTATAATGTTCTTCCCATTGAATGGCCA--------------GTGTAGCCACAGTG---------------CCCATTTAAAC--------------------------------------------------------------------------------------------------------------------------TTGGGATAACTTGCAGAGAGTGATGGAATGTTTCTCAGGTGACTCTG-ACAGGAGGCTCATTGATGAGTGGTTGCCATACTATTTTTA-
i chlSab2.chr17            I 30 C 0
s manLeu1.NW_012104165v1     2267902 560 +   2316924 GT-AAAAAGACACTTATATTGTTTTTGGAGGTAATCAAGTTTCCTTTTGTTCCAG-AAATGTAAATTATTTTTTTCTCATA------CTGATTCTAACACAGTCAGTTCCAAAAGGCATTCCTGGCTGTTCCAAATTGTGCACGGAAATGCTTCCAGGTTGTATTTAATTACTAATGTCACTTTCTTGTTATCTCACTGATTT-GAAGACTTATTATTATAGTATGTAAAAGGAAAGTGTCTGACACTTTTTCATACTTTTTGTCCCACTATTCCACTCATTTCAAAATTTAATAATAAATTCTTTAATT-AAAATACAAAATCACTGCATATTTATTTGTTAAAAAAGAATTACACTGAATTTTTAAGAAGAAATAGTATCTCCATAAATTGGGGTTGATAAATTTATGAGATTCAT-----GATTCTTCCAAAGTATAACGTTCTTCCCATTGAATGCCCA--------------GTGTAGCCACAGTG---------------CCCATTTAAAC--------------------------------------------------------------------------------------------------------------------------TTGGGATAACTCGCAGAGAGTGATGGAATGTTTCTCAGGTGACTCTG-ACAGGAGGCTCATTGATGAGTGGTTGCCATACTATTTTTA-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2179721 526 -   3067355 ---AAAAACAAACTTATATTGTTTGTTGAAGTAATCAAGTTGCTTTTTGTTCCAA-AAATACAATTTATTTCTTTCTCATA------CTGATTCTTACACAGTTAGTTCCAAAGGGCATTCCTGGCTATCCC-AATTATGCACAGAAATACTTCCAGGTTGTGTTTCGTTATTAATATCACTTCCTTGTTATCTCACTGATTCAGAAGACTCATTATTATAGTATGTAAAAGGAAATTATAGGAAACTTATTCATACTTTTTGTCCCACTAGACCACTCATTTCCATATTTAATAATAAATTCTTTAATTAAAAATACAAAATCACTGCATACTTATTTGTTAAACAAGAATTACAAAGCA-TTTTAAGAAGCAATAGCATCTACATAAATTGGGGTTGATAAACTTACAAAACTCAT-----GATTCTTTCAAAGTATAGAGTGCTTCACACTGAATGACCA--------------GTGTAGCCACACTG---------------TGCATTTAGAC--------------------------------------------------------------------------------------------------------------------------TTGGGACAACTCATAGAGAGTGATGA---------------------------------ACTGATGAGTGCTTGCCATGCTATTTTTA-
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1723908 537 -   2232465 GTAAAAAAGATACTTAAATTGTTTATTGAAGTAACTAAATTACTTTTTATTTCAGAAAATACAAACTGTTTCTTTTTCATA------CTGATTTTTACAC----AGTTTCAAAAGTTGTTATTGGCTGTACCAATTTGTGCCCAGAAATGTTTCCAGGTTGTGGTTCATTATGAAT-TTACTTTTTTGTTCTTTCACTGATTCAGAGGGATCATGCTTATGATATTTAAAAGGAACAT-TGAGAAACTTGTCTACATTTTTCCCCC------TTTATTCATTTCAATATTTAATGATACATTCTCTAATTAAAAATACAAAATTATTGCACATTTATTCATTAAACAAGAATTA-AATGCATTTTTAGGAATCAAAAATATCTATACAAATTGAGGTTGATAAACTTATGTAAATCAT-----GAATCTTCTAAAACACAGTGTGGTTCACACTAAATGGCCA--------------GAGTAGCCACAC-------------------------------------------------------------------------------------------------------------------------------------------------------TTGGACAGTTCTCATAAAATGAGGAAATATTCCTCAGGTGACTCTG-ATGGGAGGACTATTGATGAATGGTTGTCATGCTATTCTTA-
i otoGar3.GL873742         C 0 I 2384
s dasNov3.JH570037            322618 690 -    859332 AT-AAAAATGTTTTCACACTGT---CAAAGTAAATCCTGTTGCTTTCCATGCCAG-AAATACATATAAATTCTTTGTCATG------CTTATTCTTCCACAG---GTTC--AAAGAAAATCTTGGCTCCTTCATACTATGTACAGATATATTTCTTGGTTGTAGTTCATTACTAATATC------------TCTCATGGATTCAGGAGAGAGAAGATTAAAATATTAAAAGGAATAGTA--AGGAATTTTTCTGTACATTTTCTCTTTTTTCTCTGCC--TTTTACTATTCACTATTTAATTCTTTGATTAAAAATACAAAAGCACTGCAC----ATTTCTCAAACATAAATTGCAATGCATTTTC-AGGATTGATA-CAGTTATGTAAATTGAGAAAGATAAACTTAAAAGATTCATGGAAAGAGTCTCCTAAAGGACAGAATTTTTCATAAGGAATGTGCATTTTAggagagcagatgtagctcaagtgtttgagcacctgcttcccatgtatgcgaagcagacatagctcagtggttgagtgtctccttgccatgtcatgagctcaatccctggaaactcataaagagagaaagaaAAAATGTGCATTGTACATACTACTGATACATATATATATATCGGCTGAAGTAACAGAGAGTAATGGAGTGCTTCTCAGGTGACACCGTGAAAGAAGCCAATAAATGAAAGGGTGTCATGTTATTTATGA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=2101838.000000
s hg38.chr6_GL000254v2_alt    403323 381 +   4827813 CAATTAGCTTGAACTAATAAATTCATTTTACTAATTTTTTTA-CTACTTAACACAGTTACTATCTCTGTATGTACCAACCAGTATAGAA-CTATTTTAATATATTTCCAT-AATATAAT----------G------------TGCCTACTAGCCAAGTATAATCCTTGCTGAACATGTTTACAAAGAGTCTCGGAGACATAACATATTTTGCAA---GAA---CATGTAAAGCGATATTTG----ATTATGAGACAAGAAT---TTGTTAGATAAAACCATAGCA---ACCTACTCTAACTGTTCAATAACTTCATTTTATGTCTAC-CCACTATCACTTAAAGCTGAAAATGCTCCTCACCAAGTTGCGTAATGCCCCCTTTAC-------------------ATTCTTATTCCGCAGGGTGTAGATAAAAGGGTTGAGTG
s panTro5.chr6              29377940 381 + 175400573 CAATTAGCTTGAACTAATAAATTCATTTTACTAATTTTTTTA-CTACTTAACACAGTGACTATCTCTGTATGTACCAACCAGTATAGAA-CTATTTTAATATATTTCCAT-AATATAAT----------G------------TGCCTACTAGCCAAGTATAATCCTTGCTGAACATGTTTACAAAGAGTCTCGGAGACATAACATATTTTGCAA---GAA---CATGTAAAGCGATATTTG----ATTATGAGACAAGAAT---TTGTTAGATAAAACCATAGCA---ACCTACTCTAATTGTTCAATAACTTCATTTTATGTCTAC-CCACTATCACTTAAAGCTGAAAATGCTCCTCACCAAGTTGCGTAATGCCCCCTTTAC-------------------ATTCTTATTCCGCAGGGTGTAGATAAAAGGGTTGAGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29623649 381 + 173848474 CAATTAGCTTGAACTAATAAATTCATTTTACTAATTTTTTTA-CTACTTAACACAGTGACTATCTCTGTATGTACCAACCAGTATAGAA-CTATTTTAATATATTTCCAT-AATATAAT----------G------------TGCCTACTAGCCAAGTATAATCCTTGCTGAACATGTTTACAAAGAGTCTCGGAGACATAACATATTTTGCAA---GAA---CATGTAAAGCGATATTTG----ATTATGAGACAAGAAT---TTGTTAGATAAAACCATAGCA---ACCTACTCTAATTGTTCAATAACTTCATTTTATGTCTAC-CCACTATCACTTAAAGCTGAAAATGCTCCTCACCAAGTTGCGTAATGCCCCCTTTAC-------------------ATTCTTATTCCGCAGGGTGTAGATAAAAGGGTTGAGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5420458 381 +   6154872 CAATTAGCTTGAACTAATAAATTCATTTTACTAATTTTTCTA-CTACTTAACACAGTTACTATCTCTGTATGTACCAACCAGTATAGAA-CTATTTTAATATATTTCCAT-AATATAAT----------G------------TGCGTACTAGCCAAGTATAATCCTTGCTGAACATGTTTACAAAGAGTCTCGGAGACATAACATATTTTGCAA---GAA---CATGTAAAGCGATATTTG----ATTATGAGACAAGAAT---TTGTTAGATAAAACCATAGCA---ACCTACTCTAATTGTTCAATAACTTCATTTGATGTCTAC-CCACTATCACTTAAAGCTGAAAATGCTCCTCACCAAGTTGCGTAATGCCCCCTTTAC-------------------ATTCTTATTCCGCAGGGTGTAGATAAAAGGGTTGAGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29579292 381 + 172585720 CAATTAGCTTGAACTAATGAATTCATTTTACTAATATTTTTT-CTACATAACACAGTTACTATCTCCATATGTACCAACCAGTATAGAA-CTATTTTAATATATTTCCAT-AATATAAT----------G------------TGCATACTAGCCAAATATAATCCTTGCTGAACATGTTTACAAAGAGTCTCAGAGACATAACATATTTTGCAA---GAA---CATGTAAACCGATATTTG----ATTATGAGACAAGAAT---TTGTTAGAGAAAACCATAGCA---ACCTACTCTAATTGTTCAATAATTTCATTTGATGTCTAC-CAACTATCACTTAAAGCTGAAAATGCTCCTCACCAGGTGGCATAATGCCCCCTTCAC-------------------ATCCTTATTCCGCAGGGTGTAGATAAAGGGGTTGAGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29240530 381 - 170955103 CAATTAGCTTGAACTAATGAATTCATTTTACTAATATTTTTT-CTACATAACACAGTTACTATCTCCATATGTACCAACCAGTATAGAA-CTATTTTAATATATTTCCAT-AATATAAT----------G------------TGCATACTAGCCAAATATAATCCTTGCTGAACATGTTTACAAAGAGTCTCAGAGACATAACATATTTTGCAA---GAA---CATGTAAACCGATATTTG----ATTATGAGACAAGAAT---TTGTTAGAGAAAACCATAGCA---ACCTACTCTAATTGTTCAATAATTTCATTTGATGTCTAC-CAACTATCACTTAAAGCTGAAAATGCTCCTCACCAGGTGGCATAATGCCCCCTTCAC-------------------ATCCTTATTCCGCAGGGTGTAGATAAAGGGGTTGAGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2247212 381 -   2996164 CAATTAGCTTGAACTAATGAATTCATTTTACTAATATTTTTT-CTACATAACACAGTTACTATCTCCATATGTACCAACCAGTATAGAA-CTATTTTAATATATTTCCAT-AATATAAT----------G------------TGCATACTAGCCAAATATAATCCTTGCTGAACATGTTTACAAAGAGTCTCAGAGACATAACATATTTTGCAA---GAA---CATGTAAACCGATATTTG----ATGATGAGACAAGAAT---TTGTTAGAGAAAACCATAGCA---ACCTACTCTAATTGTTCAATAATTTCATTTGATGTCTAC-CAACTATCACTTAAAGCTGAAAATGCTCCTCACCAGGTGGCATAATGCCCCCTTCAC-------------------ATCCTTATTCCGCAGGGTGTAGATAAAGGGGTTGAGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2124938 381 -   2157725 CAATTAGCTTGAACTAATGAATTCATTTTACTAATACTTTTT-CTGCGTAACACAGTTACTATCTCCATATGTACCAACCAGTATAGAA-CTATTTTAATATATTTCCAC-AATATAAT----------G------------TGCATACTAGCCAAATATAATCCTTGCTGGACATGTTTACAAAAAGTCTCAGAGACATAACATATTTTGCAA---GAA---CATGTAAACCGATATTTG----ATTATGAGACAAGAAT---TTGTTAGAGAAAACCATAGCA---ACCTACTCTAATTGTTCAATAACTTCATTTGATGTCTAC-CAACTATCACTTAAAGCTGAAAATGCTCCTCACCAGGTGGCATAATGCCCCCTTCAC-------------------ATCCTTATTCCGCAGGGTGTAGATAAAGGGGTTGAGTG
i cerAty1.NW_012001495v1   C 0 I 1378
s chlSab2.chr17             28546271 381 -  71996105 CAATTAGCTTGAACTAATAAATTCATTTTACTAATATTTTTT-CTACGTAACACAGTTACTATCTCCATATGTACCAACCAGCATAGAA-CTATTTTAATATATTTCCAT-AATATAAT----------G------------TGCATACTAGCCAAATATAATCCTTGCTGAACATGTTTACAAAGAGTCTCAGAGACATAACATATTTTGCAA---GAA---CATGTAAACCGATATTTG----ATTATGAGACAAGAAT---TTGTTAGAGAAAACCATAGCA---ACCTACTCTAATTGTTCAATAACTTCATTTGACGTCTAC-CAACTATCACTTAAAGCTAAAAATGCTCCTCACCAGGTGGCATAATGCCCCCTTCAC-------------------ATCCTTATTCCGCAGGGTGTAGATAAAGGGGTTGAGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2268462 381 +   2316924 CAATTAGCTTGAACTAATGAATTCATTTTACTAATACTTTTT-CTGCGTAACACAGTTACTATCTCCATATGTACCAACCAGTATAGAA-CTATTTTAATATATTTCCAC-AATATAAT----------G------------TGCATACTAGCCAAATATAATCCTTGCTGGACATGTTTACAAAGAGTCTCAGAGACATAACATATTTTGCAA---GAA---CATGTAAACCGATATTTG----ATTATGAGACAAGAAT---TTGTTACAGAAAACCATAGCA---GCCTACTCTAATTGTTCAATAATTTCATTTGATGTCTAC-CGACTATCACTTAAAGCTGAAAATGCTCCTCACCAGGTGGCATAATGCCCCCTTCAC-------------------ATCCTTATTCCGCAGGGTGTAGATAAAGGGGTTGAGTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2180247 382 -   3067355 CAGGTAGCTTGAACTAATGAATTCATTTTACTAATATTTTTTACTACTTGGCACAGCTACTATTTCAGTATGTACCAACTAGTATATAA-CTATTTTAATATATTTTCAT-AATAAAAT----------G------------TGCATACTAGTCAAGTATAATCCTTGCCGATCATGTTTACAAAGAGTCTCAGAGACACAACATATTCTGCAA---GAG---CATGTAAACCGATATTTG----ATTATGAGACAAGAAT---TTGTTACAGAAAACTATAGCA---ACCTACTCTAATTGTTCAATAATTTCATTTGATGTCTAC-CAACTATCACTTAAAGCTGAAAATGCTCCTCACCAGGTGGCATAATGCCCCCTTCAC-------------------ATCCTGATTCCGCAGGGTGTAGATAAAGGGGTTGAGTG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1726829 363 -   2232465 CAATTAGCATAAACTAATTTATTC-------------------CTG----------------------------------AGTTTACAAGTTATTTTAATACATTTTCAA-AAAACAAA----------GTACTCACAGTGATGCTTATTAGCCAAGTATAACTGCTGCCTAACATACTAATAAAGAATATCAGAAACATGGCATAATTTGCAA---GAAGAGTATATAACATGAGATGTG----ATTAGGAGGCCAAAATGAGTTATTAGAGAAACTCATATGA---ACCTATGCTAAGTGTTAAATA-----GTTTGATATCCACTCAACTATCACTTGGAGCTGAAAATACTCTTGACCAGGGTACTTAATGCCCCCTTTACNNNNNNNNNNNNNNNNNNNNTCCTTATTCCTCAGGGTGTAGATGAAGGGGTTGAGGG
i otoGar3.GL873742         I 2384 C 0
s dasNov3.JH570037            323308 396 -    859332 TGATTAGCTTGAAC-AATGaattta---tattaaaaatttta-cttttta--aCGGTTTCTATTTTGCTATAAGGCATGCAGCAGAGAA-ATATTTTAATATATTTTCACAAACACAGTATCCACACTGG------------TGTACACTAGTCTAATATAAACCTTGCCTAAAATAATTATTAAGAGTAACAGAAATGTAACATGGTTTGGAATGGGAA---TATTGACCCTGAGATCTGGGAAATTAGTAAACAAGAATGAGTTATTAAAGAGA-CCATGGTATATACCTAGTCT-ACTGTTAAATGATTTCCTTTGATGTCTA--CAGCTGTCACTTGGAGCTGAAAATCCTCCTCACCAGATTGCCCATCGCCCCCTTCAT-------------------ATCCTTATTCCTGAGTGTGTAGATGAAGGGGTTGAGTG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=3303882.000000
s hg38.chr6_GL000254v2_alt    403704 602 +   4827813 AGGGAGTCACCACTCCATAGAAGAGGGCCATGAACTTGGGTTGATCCCTTGAGATGGAGGAGGGGGGCTGAAGGTA----CATGCTGATGGCTGGGCCATAAAATAAGAAAACTACAATAAGATGGGAGGAGCATGTCCCAAAGGCCTTTTTCCTTCCCTTGGAAGATTTGATCTTAAATACAGCACTTCCAATACTA-GCATAGGAAGCAAGAATTAAGCATAGTGGGACAGCTAACATAAAAATGCATACCACAGAGAGTGTGAGCTCGTTAGAACCCTTTTCACC-ACAGGCAA-TCTTTATC-AGAACAGG-AATCTCACACACCAAGTGGTCCAGTTTATTGAGACCACACAGTGGCAATTGTAATGTGGCAGTGGCCTCTGAGACAGCATAGATTATTCCAATTAGCCACACGGTGGAAACTA--AGGATACAGACGCGCTGATTCATGATGAGGGTGTAGTGAAGAGGTCTGCAGATGGCCACATAGCGATCAAAGGACATAATAGCCAAAAGCAAACATTCTGTTCCCCCCATTATGTGAAAGAAATAAAGCTGAACCGCACACCCCATATAGCTGATGGTCTTCTTAGAGCTTCCCAGGTTAAA
s panTro5.chr6              29378321 604 + 175400573 AGGGAGTCACCACTCCATAGAAGAGGGCCATGAACTTGGGTTGATCCCTTGAGATGGAGGAGGGGGGCTGAAGGTA----CATGCTGATGGCTGGGCCATAAAATAAGAAAACTACAATAAGATGGGAGGAGCATGTCCCAAAGGCCTTTTTCCTTCCCTTGGAAGATTTGATCTTAAATACAGCACTTCCAATACTA-GCATAGGAAGCAAGAATTAAGCATAGTGGGACAGCTAACATAAAAATGCATACCACAGAGAGTGTGAGCTCGTTAGAACCCTTTTCACC-ACAGGCAA-TCTTTATC-AGAACAGG-AATCTCACACACCAAGTGGTCCAGTTTATTGAGACCACACAGTGGCAATTGTAATGTGGCAGTGGCCTCTGAGACAGCATAGATTATTCCAATTAGCCACACGGTGGAAACTAATAGGATACAGACGCGCTGATTCATGATGAGGGTGTAGTGAAGAGGTCTGCAGATGGCCACATAGCGATCAAAGGACATAATAGCCAAAAGCAAACATTCTGTTCCCCCCATTATGTGAAAGAAATTAAGCTGAACCGCACACCCCATATAGCTGATGGTCTTCTTAGAGCTTCCCAGGTTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29624030 604 + 173848474 AGGGAGTCACCACTCCATAGAAGAGGGCCATGAACTTGGGTTGATCCCTTGAGATGGAGGAGGGGGGCTGAAGGTA----CATGCTGATGGCTGGGCCATAAAATAAGAAAACTACAATAAGATGGGAGGAGCATGTCCCAAAGGCCTTTTTCCTTCCCTTGGAAGATTTGATCTTAAATACAGCACTTCCAATACTA-GCATAGGAAGCAAGAATTAAGCATAGTGGGACAGCTAACATAAAAATGCATACCACAGAGAGTGTGAGCTCGTTAGAACCCTTTTCACC-ACAGGCAA-TCTTTATC-AGAACAGG-AATCTCACACACCAAGTGGTCCAGTTTATTGAGACCACACAGTGGCAATTGTAATGTGGCAGTGGCCTCTGAGACAGCATAGATTATTCCAATTAGCCACACGGTGGAAACTAATAGGATACAGACGCGCTGATTCATGATGAGGGTGTAGTGAAGAGGTCTGCAGATGGCCACATAGCGATCAAAGGACATAATAGCCAAAATCAAACATTGTGTTCCCCCCATTATGTGAAAGAAATTAAGCTGAACCGCACACCCCATATAGCTGATGGTCTTCTTAGAGCTTCCCAGGTTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5420839 603 +   6154872 AGGGAGTCACCACTCCATAGAAGAGGGCCATGAACTTGGGTTGATCCCTTGAGATGGAGGAGGGGGGCTGAAGGTA----CATGCTGATGGCTGGGCCATAAAATAAGAAAACTACAATAAGATGGGAGGA-CATGTCCCAAAGGCCTTTTTCCTTCCCTTGGAAGATTTGATCTTAAATACAGCACTTCCAATACTA-GCATAGAAAGCAAGAATTAAGCATAGTGGGACAGCTAACATGAAAATGCATACCACAGAGAGTGTGAGCTCGTTAGAACCCTTTTCACC-ACAGGCAA-TCTTTATC-AGAACAGG-AATCTCACACACCAAGTGGTCCAGTTTATTGAGACCACACAGTGGCAACTGTAATGTAGCAGTGGCCTCTGAGACAGCATAGATTATTCCAGTTAGCCACACGGTGGAAACTAATAGGATACAGACGCGCTGATTCATGATGAGGGTGTAGTGAAGAGGTCTGCGGATGGCCACATAGCGATCGAAGGACATAATAGCCAAAAGCAAACATTCTGTTCCCCCCATTATGTGAAAGAAATAAAGCTGAACCGCACACCCCATATAGCTGATGGTCTTCTTAGAGCTTCCCAGGTTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29579673 605 + 172585720 TGGGAGTCACCACTCCATAGAAGAGGGCCATGAACTTGGGCTGATCCCTTGAGATGGAGGA-GGAGGCTGAGAGGATAAGCATGCTGA-----GGGCCATAAAATAAGAAAACTACAATGAGACTGGAGGAACATGTCCCAAAGGCCTTTTTCCTTCCTCCAGAAGAGTTGATCTTAAATACAGCATGTCCAATACTACGCATAGGAAGCAAGAATTAAGCATAGTGGAACAGCTAACATAAAAATGCATACCACAGAGAGCGTGAGCTCG-TAGAACCTTTTTCACCAACAGGCATCTCTTTATCAAGAACAGGCAATCTCACACACT-AGTGGTCCAGCTTATTGAGACCACACAGTGGCAACCGTAATGTAGCAGTGGTCTCTGAGACAGCATAGGTTATTCCAATTAGCCACACGGTGGAAACTAATAGGATACAAATGTGCTGATTCATGATGAGGGTGTAGTGAAGAGGTCTGCAGATGGCCACATAGCGATCGAAGGACATGAGAGCCAAGAGCAAACATTCTGTGCCCCCCATTATGTGAAAGAAATAAAGCTGAACTGCACACCCCGTATAGCTGATGGTCTTCTTAGAGCTTCCCAGGTTAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29240911 604 - 170955103 TGGGAGTCACCACTCCATAGAAGAGGGCCATGAACTTGGGCTGATCCCTTGAGATGGAGGAGGGAGGCTGAAGGTA----CATGCTAATGCCTGGGCCATAAAATAAGAAAACTACAATGAGATGGGAGGAACATGTCCCAAAGGCCTTTTTCCTTCCCTCAGAAGAGTTGATCTTAAATACAGCATGTCCAATACTA-GCATAGGAAGCAAGAATTAAGCATAGTGGAACAGCTAACATAAAAATGCATACCACAGAGAGCGTGAGCTCGTTAGAACCTTTTTCACC-ACAGGCAT-TCTTTATC-AGAACAGG-AATCTCACACACTAAGTGGTCCAGCTTATTGAGACCACACAGTGGCAACCGTAATGTAGCAGTGGTCTCTGAGACAGCATAGGTTATTCCAATTAGCCACACGGTGGAAACTAACAGGATACAAATGCGCTGATTCATGATGAGGGTGTAGTGAAGAGGTCTGCAGATGGCCACATAGCGATCGAAGGACATGAGAGCCAAGAGCAAACATTCTGTGCCCCCCATTATGTGAAAGAAATAAAGCTGAACTGCACACCCCGTATAGCTGATGGTCTTCTTAGAGCTTCCCAGGTTAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2247593 604 -   2996164 TGGGAGTCACCACTCCATAGAAGAGGGCCATGAACTTGGGCTGATCCCTTGAGATGGAGGAGGGGGGCTGAAGGTA----CATGCTGATGGCTGGGCCATAAAATAAGAAAACTACAATGAGATGGGAGGAACAGGTCCCAAAGGCCTTTTTCCTTCCCTCAGAAGATTTGATTTTAAATACAGCATGTCCAATACTA-GCATAGGAAGCAAGAATTAAGCATAGTGGAACAGCTAACATAAAAATGCATACCACAGAGAGTGTGAGCTCGTTAGAACCTTTTTCACC-ACAGGCAT-TCTTTATC-AGAACAGG-AATCTCACACACTAAGTGGTCCAGCTTATTGAGACCACACAGTGGCAACCGTAATGTAGCAGTGGTCTCTGAGACAGCATAGGTTATTCCAATTAGCCACACGGTGGAAACTAATAGGATACAAATGCGCTGATTCATGATGAGGGTGTAGTGAAGAGGTCTGCAGATGGCCACATAGCGATCGAAGGACATGAGAGCCAAGAGCAAACATTCTGTGCCCCCCATTATGTGAAAGAAATAAAGCTGAACTGCACACCCCGTATAGCTGATGGTCTTCTTAGAGCTTCCCAGGTTAAC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28546652 604 -  71996105 TGGGAGTCACCACTCCATAGAAGAGGGCCATGAACTTGGGTTGATCCCTTGAGATGGAGGAGGGAGGCTGAAGGTA----CATGCTGATGGCTGGGCCATAAAATAAGAAGACTACAATGAGATGGGAGGAACATGTCCCAAAGGCCTTTTTCCTTCCCTCAGAAGATTTGATCTTAAATACAGCATGTCCAATACCA-GCATAGGAAGCAAGAATTAAGCATAGTGGAACAGCTAACATAAAAATGCATACCACAGAGAGTGTGAGCTCGTTAGCATCCTTTTCACC-ACAGGCAT-TCTTTATC-AGAACAGG-AATCTCACACACTAAGTGGTCCAGCTTATTGAGCCCACACAGTGGCAACTGTAATGTAGCAGTGGTCTCTGAGACAGCGTAGGTTATTCCAATTAGCCACACGGTGGATACTAATAGGATACAAATGCGCTGATTCATGATGAGGGTGTAGTGAAGAGGTCTGCAGATGGCCACATAGCGATCGAAGGACATGAGAGCCAAGAGCAAACATTCTGTGCCCCCCATTATGTGAAAGAAATAAAGCTGAACTGCACACCCCTTATAGCTGATGGTCTTCTTAGAGCTTCCCAGGTTAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2268843 604 +   2316924 TGGGAGTCACCACTCCATAGAAGAGGGCCATGAACTTGGGTTGATCCCTTGAGATGGAGGACGGGGGCTGAAGGTA----CATGCTGATGGCTGGGCCATAAAATAACAAAAGTACAATAAGATGGGAGGAGCATGTCCCAAAGGCCTTTTTCCTTCCCTCAGAAGATTTGATCTTAAATACAGCATGTCCAATACTA-GCATAGGAAGCAAGAATTAAGCATAGTGGGACAGCTAACATAAAAATGCATACCACAGAGAGTGTGAGCTCGTTAGCACGTTTTTCACC-ACAGGCAT-TCTTTATC-AGAACAGG-AATCTCACACAGTAAGTGGTCCAGCTTATTGAGACCACACAGTGGCAACCGTAATGTAGCAGTGGCCTCTGAGACAGCATAGGTTATTCCAATTAGCCACACGGTGGAAACTAATAGGATACAAATGCGCTGATTCATGATGAGGGTGTAGTGAAGAGGTCTGCAGATGGCCACATAGCGATCGAAGGACATGAGAGCCAAGAGCAAACATTCTGTGCCCCCCATTATGTGAAAGAAATAAAGCTGAACTGCACACCCTGTATAGCTGATGGTCTTCTTAGAGCTTCCCAGGTTAAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2180629 604 -   3067355 TGGGAGTCACCACTCCATAGAAGAGGGCCATGAACTTGGGCTGATCCCTTGAGATGGAGGATGGGGGCTGAAGGTA----CATGCTGATGGCTGGGCCATAAAATAAGAAAACTACGATGAGATGGGAGGAACATGTCCCAAAGGACTTTTTCCTTCCCTCAGAAGATTTGATCTTAAATACAGCATGTCCAATACTA-GCATAGGAAGCAAGAATTAAGCATAGTGGAACAGCTAACATAAAAATGCATACCACAGAGAGTGTGAGCTCGTTAGAACCTTTTTCACC-ACAGGCAT-TCTTTATC-AGAACAGG-AATCTCACACAGTAAGTGGTCCAGCTTATTGAGACCACACAGTGGTAACCGTAATGTAGCAGTGGCCTCTGAGACAGCATAGGTTATTCCAATTAGCCACACGGTGGAAACTAATAGGATACAAATGTTCTGATTCATGATGAGGGTGTAGTGAAGAGGTCTGCAGATGGCCACATAGCGATCGAAGGACATAAGAGCCAAGAGCAAACATTCTGTGCCCCCCATTATGTGAAAGAAATAAAGCTGAACTGCACACCCCGTATAGCTGATGGTCTTCTTAGAGCTTCCCAGGTTAAC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1727192 604 -   2232465 TAGGAGTTACCACTCCATAGAAGAGAGCCATGAACTTAGGCTGGTCTCTTGAAATGGAGGAGGGAGGCTGAAGGTA----CATGCTAATGGCTGGGCCATAAAATAGGAACACTACAATGAGATGGGAGGAACATGTCCCCAGAGCCTTTTTCCTTCCCTCAGAAGATTTAATCTTAAGTACAGCATGTCCAATACTA-GCATAGGAAGCAAGAATTAAACATAGAGGAAGGGCTAACATAAAAATGCATACCACAGAGAGTGTGAGCTCATTTGCACCCTTTTCACC-ACAGGCAG-TCTTTATC-AGAACAGG-AATCTCACACACTAAGTGATCCAGTTTATTGAGACCACATAGTGGCAATTGTAAGGTAACAGTGGCTTCTGAGACAGCGTAGGTTACTCCGCTCAGCCACACGATGGATACCAAGAGAATACAGATGTGTTGATTCATGATGAGAGTATAGTGCAGAGGTCTGCAGATGGCCACATAGCGATCAAAGGACATAATAGCCAAGAGCAAACATTCTGTGCCCCCCATTATGTGAAAGAAATAAAGCTGAACTGCACAGCCCATATAGCTGATGGTTTTCTTAGAGCTTCCCAGGTTAAA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            323704 604 -    859332 TAGGAGTCACCACTCCATAGAAGAGAGCCATGAACTTGGGCTGGTCCTTTGAGATGGATGAAGGGGGTTGAAGGTA----CATACTGATGCCTGGGCCATAAAACAAGAAAACAACAATAAGATGGGAGGAGCAAGTCCCAAAGGCCTTTTTCCTTCCCTCAGAAGATTTCATCTTAAATACAGCATGTCCAATACAA-GCATAGGAAGTGAGAATTAAGCACAGAGGAACAGCTAACATAAAAATGCAAACCACTGAGAGTGTGAGCTCATTAGCACTCTTTTCACC-ACAGGCAG-TCTTTATG-AGAACAGG-AATCTCACATACCAAGTGATCCAGCTTGTTGAAACCACAGAGTGGCAACTGTAATGTGGTAGAAGCTTCAGGGATGGCGTAGCTCAATCCCCCCACCCAGGCAATGGATGCTAACAGGATGCAAAAACATTGATTCATGATGAGGGTGTAATGAAGAGGCCGGCAGATGGCCACATAGCGATCCAAGGACATAATAGCCAAGAGGAGACACTCCGTTCCCCCCATCATGTGGAAGAAATAGAGCTGAACTGCACACCCCAGATAGCTGATGGTCTTCCTAGAGCTGCCCAGGTTATA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e cerAty1.NW_012001495v1     2125319 1378 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=10423882.000000
s hg38.chr6_GL000254v2_alt    404306 1926 +   4827813 CAGCATCTGAGGGACAATGCTTGTGGTATAACACATGTCCAAAAAGGAGAGGTTGGTGAGGAAGAAATACATGGGGCTATGAAGACGAGAGTCTAACCTGGACATGAGAATGATTGTGATATTTCCCATCACGGCTATAGGGTACATTATAAGAAGACTAGTGAACAGAGGAAGCTCTAGCCAAGGGCGGTCTGCAAAGCCTAGCAGAATAAATTCTTCAGGGTGGCTTTCATTAGTTAGTGGCATTATCTTCAATTTGTTT----CACCTGTAGTAGGGATATGCCAAAGAAGGTA----GAGCTATGGGTATCGACAAAACATGGTGATGCATTGATTGTCTACTTATAGATGACAGGGTGCAGTAACCTGGGGTCAGAATAACATAAAACATCTGGTATCAGGTGATCTTATTTTCCTATGGGACACTACAAATTAAAGGCAGATatcttaatccagt-aacccaaccattctgaaatggaatttcttcttctg-------------------------tgtaagaaggt-----tga--caataacta-----------ccattcttgagtgaggtgaggattaaataca-------------------------------------------------------------------------aagtaaaagtgaccg--------------------tatag--------------------tttt-----------------------------------------------------------------------------------------------caaactttgagttgcataaaaatcagctgagaaggttgctagaatgaaatttattgtttcctatctttaggtgtctgatagagtaaatgtggcct---ggggctgaggaaCAGGATGGTTCATTTTCAGAAACAGTGCTGCAAGGCATTACTGAAATGCTAAGAAGAATAAACATATTGAGGTAGCAATGGTAGGAGAAAAAGGAGGAGAAAACCTGGAGTCATAAGAATCATCAAGATAGCATTGTCCAGCTCCAACTAGTTAGTT-AAATAATCATATCATCTCCAAGGGAGGCAAGAAGACTTTTGGATT---TAAATCTATCTCAGCGATTTGAAATTGAACAAGAAAATTAAATACTTTT---ATTGTCTGTTTTCTCAAGTATAAATTGAGAGAGTTAACCTACAATGACAAAG-TTTCCCTATGCTCAGGAATTCGATTTT----GCATTCT--TGGGCTTTTATT---------CATTACGATTTAGTTCAACCTTTGGGCATTTGATATTTTATGTTAAATTTTAGCTAAC--ATCCATTTTGAAAAAA-A--TTTTTTTATTCAATGAGATTATC--ATCTTGCTTTAATATAAGAGTTTGGATAGTTGTCATGACCCACTGATTGCACATAACTACAAATATGTCTTTTAGTTCTGAGTGACTGCAGTCAGGACAAAAGTTGATGTCCCAATTTAGGCTTAGAGAC--AGTCAAATCT-G-AAATTA-TTTTACA--TTTT------CAAGACCTTTCC------TTTTTTTT-C-----AGCTAGACAGTACATTGATATACCAACCTCAACTAGTTTAGTGAAGCAGTATTTTGAGAAAGATTAATT--------TTTTGCTCATATGC----TTTTCTTTTAGTGGTGACATGTGTTTTATGAATATCACAATTTTCTGCAGGATGAGAAATATTCGGTTGAAAAGTTAAGATA--GCATCTCAGTGACAACATTCTGAGTAACTCTGC-CAGTCAATTAGTTGTTtaatggtaacagattacatttataagtttataaagcacagcttccacattctctgtttcattacatcttcaaagtcatcctgtgaggtGTCATACAAAGCTCCTCAGGGCTAACATGTGAATGTTGCCCTTTGATTATATGCTAT-CTCACGCCGGAAGTGTGCA-----A-AACAATAAT--AACACTCTTTCCAACTAGTCCTTAGTGAACCCTCTGTGT---------CAAACACCCCCATATGCTTTCTACAC-CATTAAATCATTTAGTATCCATCCCCAAA-CGCTATGACAAAGAAAATTTTACTATCCATATTTTAAGATA-TTGTTAATCATTTGTTTCCATACTCTGCTAATGACTAAGAACATCCTAAAGATTGAAAAGTAATTGCTGCTTTAAATGAGGTAATAAAATATTGAGACTATAAA--
s panTro5.chr6              29378925 1927 + 175400573 CAGCATCTGAGGGACAATGCTTGTGGTATAACACATGTCCAAAAAGGAGAGGTTGGTGAGGAAGAAATACATGGGGCTATGAAGACGAGAGTCTAACCTGGACACGAGAATGATTGTGACGTTTCCCATCACGGCTATAGGGTACATTATAAGAAGACTAGTGAACAGAGGAAGCTCTAGCCAAGGGCGGTCTGCAAAGCCTAGCAGAATAAATTCTTCAGGGTGGCTTTCATTAATTAGTGGCATTATCTTCAATTTGTTT----CACCTGTAGTAGGGATGTGCCAAAGAAGGTA----GAGCTATGGGTATCAACAAAACTTGGTGATGCATTGATTGTCTACTTATAGATGACAGGGTGCAGTAACCTGGGGTCAGAATAACATAAAACATCTGGTATCAGGTGATCTTATTTTCCTACGGGACACTACAAATTAAAGGCAGATatcttaatccagt-aacccaaccattctgaaatggaatttcttcttctg-------------------------tgtaagaaggt-----tga--cagtaacta-----------tcattcttgagtgaggtgaggattaaatACA-------------------------------------------------------------------------AAGTAAAAGTGACTG--------------------TAtag--------------------tttt-----------------------------------------------------------------------------------------------caaactttgagttgcataaaaatcagctgagaaggttgctagagtgaaatttattgtttcctatctttaggtgtctgatagagtaaatgtggcct---ggggctgaggaaCAGGATGGTTCATTTTCAGAAACAGTGCTGCAAGGCATTACTGAAATGCTAAGAAGAATAAACATATTGAGGTAGCAATGGTAGGAGAAAAAGGAGGAGAAAACCTGGAGTCATAAGAATCATCAAGATAGCATTGTCCAGCTCCAACTAGTTAGTT-AAATAATCATATCATCTCCAAGGGAAGCAAGAAGACTTTTGGATT---TAAATCTATCTCAGTGATTTGAAATTGAACAAGAAAATTAAATACTTTT---ATTGTCTGTTTTCTCAAGTATAAATTGAGAGAGTTAACCTACAATGACAAAG-TTTCCCTATGCTCAGGAATTCGATTTT----GCATTCT--TGGGCTTTTATT---------CATTACGATTTAGTTCAACCTTTGGGCATTTGATATTTTATGTTAAATTTTAGCTAAC--ATCCATTTTGAAAAAA-A-TTTTTTTTATTCAATGAGATTATC--ATCTTGCTTTAATATAAGAGTTTGGATAGTTGTCATGACCCACTGATTGCACATAACTACAAATATGTCTTTTAGTTCGGAGTGACTGCAGTCAGGACAAAAGTTGATGTCCCAATTTAGGCTTAGAGAC--AGTCAAATCT-G-AAATTA-TTTTACA--TTTT------CAAGACCTTTCC------TTTTTTTT-C-----AGCTAGAAAGTACATTGGTATACCAACCTCAACTAGTTTAGTGAAGCAGTATTTTGAGAAAGATTAATT--------TTTTGCTCATATGC----TTTTCTTTTAGTGGTGACATGTATTTTATGAATATCACAATTTTCTGCAGGATGAGAAATATTCGGTTGAAAAGTTAAGATA--GCATCTCAGTGACAACATTCTGAGTAACTCTGC-CAGTCAATTAGTTGTTtaatggtaacagattacatttataagtttataaagcacagcttccacattctctgtttcattacatcttcaaagtcatcctgtgaggtGTCATACAAAGCTCCTCAGGGCTAACATGTGAATGTTGCCCTTTGATTATATGCTAT-CTCACGCCGGAAGTGTGCA-----A-AACAATAAT--AACACTCTTTCCAACTAGTCCTTAGTGAACCCTCTGTGT---------CAAACACCCCCATATGCTTTTTATAC-CATTAAATCATTTAGTATCCATCCCCAAA-CGCTATGACAAAGAAAATTTTACTATCCATATTTTAAGATA-TTGTTAATCATTTGTTTCCATACTCTGCTAATGACTAAGAACATTCTAAAGATTGAAAAGTAATTGCTGCTTTAAATGAGGTAATAAAATATTGAGACTATAAA--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29624634 1927 + 173848474 CAGCATCTGAGGGACAATGCTTGTGGTATAACACATGTCCAAAAAGGAGAGGTTGGTGAGGAAGAAATACATGGGGCTATGAAGACGAGAGTCTAACCTGGACACGAGAATGATTGTGACGTTTCCCATCACGGCTATAGGGTACATTATAAGAAGACTAGTGAACAGAGGAAGCTCTAGCCAAGGGCGGTCTGCAAAGCCTAGCAGAATAAATTCTTCAGGGTGGCTTTCATTAATTAGTGGCATTATCTTCAATTTGTTT----CACCTGTAGTAGGGATGTGCCAAAGAAGGTA----GAGCTATGGGTATCAACAAAACATGGTGATGCATTGATTGTCTACTTATAGATGACAGGGTGCAGTAACCTGGGGTCAGAATAACATAAAACATCTGGTATCAGGTGATCTTATTTTCCTACGGGACACTACAAATTAAAGGCAGATatcttaatccagt-aacccaaccattctgaaatggaatttcttcttctg-------------------------tgtaagaaggt-----tga--cagtaacta-----------tcattcttgagtgaggtgaggattaaatACA-------------------------------------------------------------------------AAGTAAAAGTGACTG--------------------TAtag--------------------tttt-----------------------------------------------------------------------------------------------caaactttgagttgcataaaaatcagctgagaaggttgctagaatgaaatttattgtttcctatctttaggtgtctgatagagtaaatgtggcct---ggggcTGAGGAACAGGATGGTTCATTTTCAGAAACAGTGCTGCAAGGCATTACTGAAATGCTAAGAAGAATAAACATATTGAGGTAGCAATGGTAGGAGAAAAAGGAGGAGAAAACCTGGAGTCATAAGAATCATCAAGATAGCATTGTCCAGCTCCAACTAGTTAGTT-AAATAATCATATCATCTCCAAGGGAAGCAAGAAGACTTTTGGATT---TAAATCTATCTCAGTGATTTGAAATTGAACAAGAAAATTAAATACTTTT---ATTGTCTGTTTTCTCAAGTATAAATTGAGAGAGTTAACCTACAATGACAAAG-TTTCCCTATGCTCAGGAATTCGATTTT----GCATTCT--TGGGCTTTTATT---------CATTACGATTTAGTTCAACCTTTGGGCATTTGATATTTTATGTTAAATTTTAGCTAAC--ATCCATTTTGAAAAAA-A-TTTTTTTTATTCAATGAGATTATC--ATCTTGCTTTAATATAAGAGTTTGGATAGTTGTCATGACCCACTGATTGCACATAACTACAAATATGTCTTTTAGTTCGGAGTGACTGCAGTCAGGACAAAAGTTGATGTCTCAATTTAGGCTTAGAGAC--TGTCAAATCT-G-AAATTA-TTTTACA--TTTT------CAAGACCTTTCC------TTTTTTTT-C-----AGCTAGAAAGTACATTGGTATACCAACCTCAACTAGTTTAGTGAAGCAGTATTTTGAGAAAGATTAATT--------TTTTGCTCATATGC----TTTTCTTTTAGTGGTGACATGTATTTTATGAATATCACAATTTTCTGCAGGATGAGAAATATTCGGTTGAAAAGTTAAGATA--GCATCTCAGTGACAACATTCTGAGTAACTCTGC-CAGTCAATTAGTTGTTtaatggtaacagattacatttataagtttataaagcacagcttccacattctctgtttcattacatcttcaaagtcatcctgtgaggtGTCATACAAAGCTCCTCAGGGCTAACATGTGAATGTTGCCCTTTGATTATATGCTAT-CTCACGCCGGAAGTGTGCA-----A-AACAATAAT--AACACTCTTTCCAACTAGTCCTTAGTGAACCCTCTGTGT---------CAAACACCCCCATATGCTTTTTATAC-CATTAAATCATTTAGTATCCATCCCCAAA-CGCTATGACAAAGAAAATTTTACTATCCATATTTTAAGATA-TTGTTAATCATTTGTTTCCATACTCTGCTAATGACTAAGAACATTCTAAAGATTGAAAAGTAATTGCTGCTTTAAATGAGGTAATAAAATATTGAGACTATAAA--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5421442 1928 +   6154872 CAGCATCTGAGGGACAATGCTTGTGGTATAACACATGTCCAAAAAGGAGAGGTTGGTGAGGAAGAAATACATGGGGCTATGAAGACGAGAGTCTAACCTGGACACGAGAATGATTGTGACGTTTCCCATCACGGCTATAGGGTACATTATAAGAAGACTAGTGAACAGAGGAAGCTCTAGCCAAGGGCGGTCTGCAAAGCCTAGCAGAATAAATTCTTCAGGGTGGCTTTCATTAATTAGTGGCATTATCTTCAATTTGTTT----CACCTGTAGTAGGGATGTGCCAAAGAAGGTA----GAGCTATGGGTATCGACAAAACATGGTGATGCATTGATTGTCTACTTATAGATGACAGGGTGCAGTAACCTGGGGTCAGAATAACATAAAACATCTGGTATCAGGTGATCTTATTTTCCTACGTGACACTACAAATTAAAGGCAgttatcttaatccagt-aacccaaccattttgaaatggaatttcttcttctg-------------------------tgtaagaaggt-----tga--caataacta-----------tcattcttgagtgaggtgaggattaaatACA-------------------------------------------------------------------------AAGTAAAAGTGACTG--------------------TAtag--------------------tttt-----------------------------------------------------------------------------------------------caaactttgagttgcataaaaatcagctgagaaggttgctagaatgaaatttattgtttcctatctttaggtgtctgatagagtaaatgtggcct---ggggctgaggaaCAGGATGGTTCATTTTCAGAAACACTGCTGCAAGGCATTACTGAAATGCTAAGAAGAATAAACATATTGAGGTAGCAATGGTAGGAGAAAAAGGAGGAGAAAACCTGGAGTCATAAGAATCATCCAGATAGCGTTGTGCTGCTCCAACTAGTTAGTT-AAATAATCATATCACTTCCAAGGGAAGCACGAAGACTTTTGGATT---TAAATCTATCTCAGCGATTTGAAATTGAACAAGAAAATTAAATACTTTT---ATTGTCCATTTTCTCAAGTATAAATTGAGAGAGTTAACCTACAATGACAAAG-TTTCCCTATGCTCAGGAATTTGATTTT----GCATTCT--TGGGCTTTTATT---------CATTACGATTTAGTTCAACCTTTGGGCATTTGATATTTTATGTTAAATTTTAGCTAA---ATACATTTTGAAAAAA-A--TTTTTTTATTCAATGAGATTATC--ATCTTGTTTTAATATAAGAGTTTGGATAGTTGTCATGACCCACTGATTGTACATAACTACAAATATGTCTTTTAGTTCTGAGTGACTGCAGTCAGGACAAAAGTTGACGTCCCAATTTAGGCTTAGAGAC--AGTCAAATCT-G-AAATTA-TTTTACA--TTTT------CAAGACCTTTCC---TTTTTTTTTTT-C-----AGCTAGAAAGTACATTGATATACCAACCTCAACTAGTTTAGTGAAGCAGTATTTTGAGAAAGATTAATT--------TTTTGCTCATATGC----TTTTCTTTTAGTGGTGACATGTGTTTTATGAATATCACAATTTTCTGCAGGATGAGAAATATTCGGTTGAAAAGTTAAGATA--GCATCTCAGTGACAACATTCTGAGTAACTCTGC-CAGTCAATTAGTTGTTtaatggtaacagattacatttataagtttataaagcacatcttccacattctctgtttcattacatcttcaaagtcatcctgtgaggtGTCATACAAAGCTCCTCAGGGCTAACATGTGAATGTTGCCCTTTGGTTATATGCTAT-CTCATGCCGGAAGTGTGCA-----A-AACAATAAT--AACACTCTTTCCAACTAGTCCTTAGTGAACCCTCTGTGT---------CAAACACCCCCATATGCTTTTTATAC-CATTAAATCATTTAGTATCCATCCCCGAA-CGCTATGACAAAGAAAATTTTACTATCCATATTTTAAGATA-TTGTTAATCATTTGTTTCCATACTTTGCTAATGACTAAGAACATTCTAAAGATTGAAAAGTAATTGCTGCTTTAAATGAGATAATGAAATATTGAGACTACAAA--
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29580278 1923 + 172585720 CAGCATCTGAGGGACAATGCTTGTAGTGTAACACATGTCCAAAAAGGAGAGGTTGACGAGGAAGAAATACATGGGGCTGTGAAGACGAGAGTCTAACCTGGACACCAGAATGATTGTGACGTTTCCCATCATGGCTATGGGGTACGTTATAAGAAGACTAGTGAACAGAGGAAGCTCTAGCCAAGGGCGGTCTGCAAAGCCTAGCAGAATAAATTCTTCAGGACGGCTTTCATTAATTAGTGGCATTATCTTCAATTCGTTT----CACCTGTAGTAGGGATGCGGCAAGGAAGTTA----GAGATACGGGCATTGACAAAACATGGTGATGCATTGATTATCTACTTATAGATGACAGGGTGCAGTAAACTGGGGTCAGAATAATATAAAACATCTGGTATCAGGTGATCTTATTTTCCTACGTGACACTACAAATTAAAGGCAGTTATCGTAATCCagt-aacccaaccattttgaaatggaatttcttcctctg-------------------------tgtaagaaagt-----tga--caataacta-----------tcattcttgagtgaggtgaagattaaatACA-------------------------------------------------------------------------AAGTAAAAGTGGCTG--------------------TATAG--------------------tttt-----------------------------------------------------------------------------------------------caaactttgagttgcatacaaatcagctgaggaggttgctagaatgAAATTTATTGTTTCTTATCTTTAGGTGTCTGATAGAGTAAATGTGTCCT---GGGGCTGAGGAACAGGATGATTCATTTTCAGAAACCCTGCTGCAAGGCATTGCTGAAATGTTAAGAAGAATAAACATATTGAGGTAGCAATGGTAGGAGAAAAAGGAGGAGAAAACCTGGAGTCATATGA---ATCAAGATAGCATTGTCCAGCTCCAAATAGTTGGTT-GAATAAT-ATATAATCTCCAAGGGAAGCAAGAAGGCTTTTGGATTAAACAAATCTATCTCAGCGATTTGAAACTGAACAAGAAAATTAAATACTTTT---ATTGTCTGTTTTCTCAAGTATAAATTGAGAGAATTAACCTACAATGACAAAG-TTTCCCTATGCTCAGGAATTTTGTTTT----GCATTCT--TGGGCTTTTATT---------CATTACGATTTAGTTCAACCTTTGGGCATTTGATATTTTATGTTAAATTTTAGCTAGC--ATTCATTTTGAAAAAA-A---ATTTTTATTCAATGAGATTATC--ATCTTGTTTTAGTATAAGAGTTTGGATTGTTGTCATGACCTACTGATTGTACATAACTACAAATATGTCTTTTAGTTCCAAGTGACTGCTGTCAGGACAAAAGTCGACGTCCTGGTTTAGGCTCAGAGAC--AGTCAAATCT-G-AAATTA-TTTCACGATCTTT------CAAGACCTTTCC--TTTTTTTTTTTT-C-----AGCTAAAAAGTACATTGATATACCAACATCAGCTAGTTTAGTGAAGCAGTATTTTTAGAAAG-TTAATT--------TTTTGCTCATATGC---------TTTTAGTGGTGACATGTGTTTTATG-AGATCACAATTCTCTGCAGGATGAGAAATATTCAGTCAAAAAGTTAAGATA--GCATCTCCGTAACAACATTCTGAGTCACTCTGC-CAGTCAATTAGTTGTTTCATGGTAGCAGATTACATTTATAAGTTTATAAAGCACAGCTTCCACATTCTCTGCTTCATTACATCTTCAAAGTCATCCTCTGAGGTGTCACACAGAGCTACTCAGGGCTAACATGTGAATGTTGCCCTTTGATTATATGCTAT-CTTAGGCCAGAAGTGTGCA-----A-AACAATAAT--AATACTCTTTCCAACTAGTCCTCAGTGAAACCTCTGTGT---------CAAACACCCCCATATGCTTTTTATAC-CATTAAATCATTTAGTATCCATCCCCAAA-TGCTATGACAATGAAAATTTTGGTATCCATATTTTAAGATA-TTGTTAATCATTTGTTTCCATACTCTGCTAATAACTAAGAACATTCTAAAGATTGAAAAGTAATCGCTGCTTTAAATGAGGTAATGAAATATTGAGACTATAAA--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29241515 1923 - 170955103 CAGCATCTGAGGGACAATGCTTGTAGTGTAACACATGTCCAAAAAGGAGAGGTTGGCGAGGAAGAAATACATGGGGCTGTGAAGACGAGAGTCTAACCTGGACACCAGAATGATTGTGACGTTTCCCATCATGGCTATGGGGTACGTTATAAGAAGACTAGTGAACAGAGGAAGCTCTAGCCAAGGGCGGTCTGCAAAGCCTAGCAGAATAAATTCTTCAGGACGGCTTTCATTAATTAGTGGCATTATCTTCAATTCGTTT----CACCTGTAGTAGGGATGCGGCAAGGAAGTTA----GAGATACGGGCATTGACAAAACATGGTGATACATTGATTATCTACTTATAGATGACAGGGTGCAGTAAACTGGGGTCAGAATAACATAAAACATCTGGTATCAGGTGATCTTATTTTCCTACGTGACACTACAAATTAAAGGCAGTTATCGTAATCCAGT-AACCCAACCATTTTGAAATGGAATTTCTTCCTCTG-------------------------TGTAAGAAGGT-----TGA--CAATAACTA-----------TCATTCTTGAGTGAGGTGAAGATTAAATACA-------------------------------------------------------------------------AAGTAAAAGTGGCTG--------------------TATAG--------------------tttt-----------------------------------------------------------------------------------------------caaactttgagttgcatacaaatcagctgaggaggttgctagaatgAAATTTATTGTTTCTTATCTTTAGGTGTCTGATAGAGTAAATGTGTCCT---GGGGCTGAGGAACAGGATGATTCATTTTCAGAAACCCTGCTGCAAGGCATTGCTGAAATGTTAAGAAGAATAAACATATTGAGGTAGCAATGGTAGGAGAAAAAGGAGGAGAAAACCTGGAGTCATATGA---ATCAAGATAGCGTTGTCCAGCTCCAAATAGTTGGTT-GAATAAT-ATATAATCTCCAAGGGAAGCAAGAAGGCTTTTGGATTAAACAAATCTATCTCAGCGATTTGAAACTGAACAAGAAAATTAAATACTTTT---ATTGTCCGTTTTCTCAAGTATAAATTGAGAGAATTAACCTACAATGACAAAG-TTTCCCTATGCTCAGGAATTTTGTTTT----GCATTCT--TGGGCTTTTATT---------CATTACGATTTAGTTCAACCTTTGGGCATTTGATATTTTATGTTAAATTTTAGCTAGC--ATTCATTTTGAAAAAA-A---ATTTTTATTCAATGAGATTATC--ATCTTGTTTTAGTATAAGAGTTTGGATTGTTGTCATGACCTACTGATTGTACATAACTACAAATATGTCTTTTAGTTCCAAGTGACTGCTGTCAGGACAAAAGTCGACGTCCCGGTTTAGGCTCAGAGAC--AGTCAAATCT-G-AAATTA-TTTCACGACCTTT------CAAGACCTTTCC--TTTTTTTTTTTT-C-----AGCTAAAAAGTACATTGATATACCAACATCAGCTAGTTTAGTGAAGCAGTATTTTGAGAAAG-TTAATT--------TTTTGCTCATATGC---------TTTTAGTGGTGACATGTGTTTTATG-AGATCACAATTCTCTGCAGGATGAGAAATATTCAGTCAAAAAGTTAAGATA--GCATCTCCGTAACAACATTCTGAGTCACTCTGC-CAGTCAATTAGTTGTTTCATGGTAGCAGATTACAtttataagtttataaagcacagcttccacattctctgcttcattacatcttcaaagtcatcctctgaggtgtcacacagagcTACTCAGGGCTAACATGTGAATGTTGCCCTTTGATTATATGCTAT-CTTAGGCCAGAAGTGTGCA-----A-AACAATAAT--AATACTCTTTCCAACTAGTCCTTAGTGAAACCTCTGTGT---------CAAACACCCCCATATGCTTTTTATAC-CATTAAATCATTTAGTATCCATCCCCCAA-TGCTATGACAATGAAAATTTTGGTATCCATATTTTAAGATA-TTGTTAATCATTTGTTTCCATACTCTGCTAATAACTAAGAACATTCTAAAGATTGAAAAGTAATCGCTGCTTTAAATGAGGTAATGAAATATTGAGACTATAAA--
i macFas5.chr4             C 0 I 81681
s macNem1.NW_012011356v1     2248197 1923 -   2996164 CAGCATCTGAGGGACAATGCTTGTGGTGTAACACATGTCCAAAAAGGAGAGGTTGGCGAGGAAGAAATACATGGGGCTGTGAAGACGAGAGTCTAACCTGGACACCAGAATGATTGTGACGTTTCCCATCATGGCTATGGGGTACGTTATAAGAAGACTAGTGAACAGAGGAAGCTCTAGCCAAGGGCGGTCTGCAAAGCCTAACAGAATAAATTCTTCAGGACGGCTTTCATTAATTAGTGGCATTATCTTCAATTCGTTT----CACCTGTAGTAGGGATGCGGCAAGGAAGTTA----GAGATACGGGCATTGACAAAACATGGTGATGCATTGATTATCTACTTATAGATGACAGGGTGCAGTAAACTGGGGTCAGAATAACATAAAACATCTGGTATCAGGTGATCTTATTTTCCTACGTGACACTACAAATTAAAGGCAGTTATCGTAATCCagt-aacccaaccattttgaaatggaatttcttcctctg-------------------------tgtaagaaggt-----tga--caataacta-----------tcattcttgagtgaggtgaagattaaatACA-------------------------------------------------------------------------AAGTAAAAGTGGCTG--------------------TATAG--------------------tttt-----------------------------------------------------------------------------------------------caaactttgagttgcatacaaatcagctgaggaggttgctagaatgAAATTTATTGTTTCTTATCTTTAGGTGTCTGATAGAGTAAATGTGTCCT---GGGGCTGAGGAACAGGATGATTCATTTTCAGAAACCCTGCTGCAAGGCATTGCTGAAATGTTAAGAAGAATAAACATATTGAGGTAGCAATGGTAGGAGAAAAAGGAGGAGAAAACCTGGAGTCATATGA---ATCAAGATAGCGTTGTCCAGCTCCAAATAGTTGGTT-GAATAAT-ATATAATCTCCAAGGGAAGCAAGAAGGCTTTTGGATTAAACAAATCTATCTCAGCGATTTGAAACTGAACAAGAAAATTAAATACTTTT---ATTGTCTGTTTTCTCAAGTATAAATTGAGAGAATTAACCTACAATGACAAAG-TTTCCCTATGCTCAGGAATTTTGTTTT----GCATTCT--TGGGCTTTTATT---------CATTACGATTTAGTTCAACCTTTGGGCATTTGATATTTTATGTTAAATTTTAGCTAGC--ATTCATTTTGAAAAAA-A---ATTTTTATTCAATGAGATTATC--ATCTTGTTTTAGTATAAGAGTTTGGATTGTTGTCATGACCTACTGATTGTACATAACTACAAATATGTCTTTTAGTTCCAAGTGACTGCTGTCAGGACAAAAGTCGACGTCCCGGTTTAGGCTCAGAGAC--AGTCAAATCT-G-AAATTA-TTTCACGACCTTT------CAAGACCTTTCC--TTTTTTTTTTTT-C-----AGCTAAAAAGTACATTGATATACCAACATCAGCTAGTTTAGTGAAGCAGTATTTTGAGAAAG-TTAATT--------TTTTGCTCATATGC---------TTTTAGTGGTGACATGTGTTTTATG-AGATCACAATTCTCTGCAGGATGAGAAATATTCAGTCAAAAAGTTAAGATA--GCATCTCCGTAACAACATTCTGAGTCACTCTGC-CAGTCAATTAGTTGTTTCATGGTAGCAGATTACATTTATAAGTTTATAAAGCACAGCTTCCACATTCTCTGCTTCATTACATCTTCAAAGTCATCCTCTGAGGTGTCACACAGAGCTACTCAGGGCTAACATGTGAATGTTGCCCTTTGATTATATGCTAT-CTTAGGCCAGAAGTGTGCA-----A-AACAATAAT--AATACTCTTTCCAACTAGTCCTTAGTGAAACCTCTGTGT---------CAAACACCCCCATATGCTTTTTATAC-CATTAAATCATTTAGTATCCATCCCCCAA-TGCTATGACAACGAAAATTTTGGTATCCATATTTTAAGATA-TTGTTAATCATTTGTTTCCATACTCTGCTAATAACTAAGAACATTCTAAAGATTGAAAAGTAATCGCTGCTTTAAATGAGGTAATGAAATATTGAGACTATAAA--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2126697 1925 -   2157725 CAGCATCTGAGGGACAATGCTTGTGGTGTAACACATGTCCAAAAAGGAGAGGTTGGCGAGGAAGAAATACATAGGGCTGTGAAGACGAGAGTCTAACCTGGACACCAGAATGATTGTGACGTTTCCCATCATGGCTATGGGGTACGTTATAAGAAGACTAGTGAACAGAGGAAGCTCTAGCCAAGGGCGGTCTGCAAAGCCTAACAGAATAAATTCTTCAGGACGGCTTCCATTAATTAGTGGCATTATCTTCAATTCGTTT----CACCTGTAGTAGGGATGCGGCAAGGAAGTTA----GAGATATGGGCATTGACAAAACATGGTGATGCATTGATTGTCTACTTATAGATGACAGGGTGCAGTAAACTGGGGTCAGAATAACATAAAACATCTAGTATCAGGTGATCTTATTTTCCTGCGTGACACTACAAATTAAAGGCAGTTATCGTAATCCagt-aacccaaccattttgaaatggaatttcttcctctg-------------------------tgtaagaaggt-----tga--taataacta-----------tcattcttgagtgaggtgaagattaaatACA-------------------------------------------------------------------------AAGTAAAAGTGGCTG--------------------TATAG--------------------tttt-----------------------------------------------------------------------------------------------caaactttgagttgcatacaaatcagctgaggaggttgctagaatgAAATTTATTGTGTCTTATCTTTAGGTGTCTGATAGAGTAAATGTGTCCT---GGGGCTGAGGAACAGGATGATTCATTTTCAGACACCCTGCTGCAAGGCATTGCTGAAATGTTAAGAAGAATAAACATATTGAGGTAGCAATGGTAGGAGAAAAAGGAGGAGAAAACCTGGAGTCATATGA---ATCAAGATAGCGTTGTCCAGCTCCAAATAGTTGGTT-GAATAAT-ATATAATCTCCAAGGGAAGCAAGAAGGCTTTTGGATTAAACAAATCTATCTCAGCGATTTGAAACTGAACAAGAAAATTAAATACTTTT---ATTGTCCGTTTTCTCAAGTATAAATTGAGAGAATTAACCTACAATGACAAAG-TTTCCCTATGCTCAGGAATTTTGTTTT----GCATTCT--TGGGCTTTTATT---------CATTACGATTTAGTTCAACCTTTGGGCATTTGATATTTTATGTTAAATTTTAGCTAGC--ATTCATTTTGAAAAAA-A---ATTTTTATTCAATGAGATTATC--ATCTTGTTTTAGTATAAGAGTTTGGATAGTTGTCATGACCTACTGATTGTACATAACTACAAATATGTCTTTTAGTTCCAAGTGACTGCTGTCAGGACAAAAGTCGATGTCCCGGTTTAGGCTCAGAGAC--AGTCAAATCT-G-AAATTA-TTTCACGACCTTT------CAAGATCTTTCCTTTTTTTTTTTTTT-C-----AGCTAAAAAGTACTTTGATATACCAACATCAGCTAGTTTAGTGAAGCAGTATTTTGAGAAAG-TTAATT--------TTTTGCTCATATGC---------TTTTAGTGGTGACATGTGTTTTATG-AGATCACAATTCTCTGCAGGATGAGAAATATTCAGTCAAAAAGTTAAGATA--GCATCTCTGTAACAACATTCTGAGTCACTCTGC-CAGTCAATTAGTTGTTTCATGGTAGCAGATTACATTTATAAGTTTATAAAGCACAGCTTCCACATTCTCTGCTTCATTACATCTTCAAAGTCATCCTCTGAGGAGTCACACAGAGCTACTCAGGGCTAACATGTGAATGTTGCCCTTTGATTATATGCTAT-CTTAGGCCAGAAGTGTGCA-----A-AACAATAAT--AATACTCTTTCCAACTAGTCCTTAGTGAAACCTCTGTGT---------CAAACACCCCCATATGCTTTTTATAC-CATTAAATCATTTAGTATCCATTCCCAAA-TGCTATGACAACGAAAATTTTGGTATCCATATTTTAAGATA-TTGTTAATCATTTGTTTCCATACTCTGCTAATAACTAAGAACATTCTAAAGATTGAAAAGTAATCGCTGCTTTAAATGAGGTAATGAAATATTGAGACTATAAA--
i cerAty1.NW_012001495v1   I 1378 C 0
s chlSab2.chr17             28547256 1908 -  71996105 CAGCATCTGAGGGACAATGCTTGTGGTGTAACACATGTCCAAAAAGGAGAGGTTGGCGAGGAAGAAATACATGGGGCTGTGAAGACGAGAGTCTAACCTGGACACCAGAATGATTGTGACGTTTCCCATCATGGCTATGGGGTATGTTATAAGAAGACTAGTGAACAGAGGAAGCTCTAGCCAAGGGCGGTCTGCAAAGCCTAGCAGAATAAATTCTTCAGGGCGGCTTTCATTAATTAGTGGCATTATCTTCAATTTGTTT----TACCTGTAGTAGGGATGTGGCAAGGAAGTTA----GAGATACGGGCATTGACAAAACATGGTGATGCATTGATTGTCTACTTATAGATGACAGGGTGCAGTAACCTGGGGTCAGAATAACATAAAACATCTGGTATCAGGTGATCTTGTTTTCCTACGTGACACTACAAATTAAAGGCAGTTATCTTAATCCAGT-AACCCAACCATTTTGAAATGGAATTTCTTCCTCTG-------------------------TGTAAGAAGGT-----TGA--CAATAACTA-----------TCATTCTTGAGTGAGGTGAAGATTAAATACA-------------------------------------------------------------------------AAGTAAAAGTGGCTG--------------------TAtag--------------------tttt-----------------------------------------------------------------------------------------------caaactttgagttgcataaaaatcagctgaggaggttgctagaatgaaatttattgtttcttatctttaggtgtctgatagagtaaatgtgtcct---ggggctgaggaaCAGGATGATTCATTTTCAGAAACCCTGCTGCAAGGCATTGCTGAAATGTTAAGAAGAATAAACATATTGAGGTAGCAATGGTAGGAGAAAAAGGAGGAGAAAACCTGGAGTCATATGA---ATCAAGATAGCGTTGTCCAGCTCCAACTAGTTAGTT-GAATAAT-ATATAATCTCCAAGGGAAGCAAGAAGGCTTTTGGATGAAACAAATTTATCTCAGTGATTTGAAACTGAACAAGAAAATTAAATACTTTT---ATTATCTGTTTTCTGGAGTATAAATTGAGAGAATTAACCTATAATGACAAAG-TTTCCCTATGTTCAGGAATTTTGTTTT----GCATTCT--TGGGCTTTTATT---------CATTACAACTTAGTTCAACCTTTGGGCATTTGATA--------TAAATTTTAGCTAGC--ATCCATTTTGAAAAAA-A---ATTTTTATTCAATGAGATTATC--ATCTTGTTTTAGTATAAGAGTTTGGATAGTTGTCATGACCTGCTGATTGTACATAACTACAAATATGTCTTTTAGTTCTGAGTGACTGCTGTCAGGACAAAAGTTGACATCCCGGTTTAGGCTCAGAGAC--CGTCAAATCT-G-AAATTA-TTTCACA--TTTT------CAAGACCTTTCCTTTTTTTTTTTTTTCC-----AGCTAAAAAGTACATTGACATACCAACATCAGCTAGTTTAGTGAAGCAGTGTTTTGAGAAAG-TTAATT--------TTTTGCTCATATGC---------TTTTAGCGGTGACATGTGTTTTATG-AGATCACAATTCTCTGCAGAATGAGAAATATTCAGTCAAAAAGTTAAGGTA--GCATCTCCGTAACAACATTCTGAGTCACTCTGC-C--------AGTTGTTTCATGGTAGCAGATTACAtttataagtttataaagcacagcttccacattctctgcttcattacatcttcaaagtcatcctctgaggtgtcacacagagcTACTCAGGGCTAACATGTGAATGTTGCCCTTTGATTATATGCTAT-CTTAGGCCAGAAGTGTGCA-----A-AACAATAAT--AATACTCTTTCCAATAAGTCCTTAGTGAACCCTCTGTGT---------CAAACACCCCCATATGCTTTTTATAC-CATTAAATCATTTAGTATCCATCCCCAAA-TGCTATGACAATGAAAATTTTGGTATCCATATTCTAAGATA-TTGTTAATCATTTGTTTCCATACTCTGCTAATAACTAAGAACATTCTAAAGATTGAAAAGTAATCGCTGCTTTAAATGAGGTAATGAAATATTGAGACTATACA--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2269447 1915 +   2316924 CAGCATCTGAGGGACAATGCTTGTGGTGTAACACATGTCCAAAAAGGAGAGGTTGGCGAGGAAGAAATACATAGGGCTGTGAAGACGAGAGTCTAACCTGGACACCAGAATGATTGTGACGTTTCCCATCATGGCTATGGGGTACGTTATAAGAAGACTAGTGAACAGAGGAAGCTCTAGCCAAGGGCGGTCTGCAAAGCCTAGCAGAATAAATTCTTCAGGACGGCTTTCATTAATTAGTGGCATTATCTTCAATTCGTTT----CACCTGTAGTAGGGATGCGGCAAGGAAGTTA----GAGATACGGGCATTGACAAAACATGGTGATGCATTGATTGTCTACTTATAGATGACAGGGTGCAGTAAACTGGGGTCAGAATAACATAAAACATCTAGTATCAGGTGATCTTATTTTCCTGCGTGACACTACAAATTAAAGGCAGTTATCGTAATCCagt-aacccaaccattttgaaatggaatttcttcctctg-------------------------tgtaagaaggt-----tga--caataacta-----------tcattcttgagtgaggtgaagattaaatACA-------------------------------------------------------------------------AAGTAAAAGTGGCCG--------------------TATAG--------------------tttt-----------------------------------------------------------------------------------------------caaactttgagttgcatacaaatcagctgaggaggttgctagaatgAAATTTATTGTTTCTTTTCTTTAAGTGTCTGATAGAGTAAATGTGTCCT---GGGGCTGAGGAA----------CATTTTCAGAAACCCTGCTGCAAGGCATTGCTGAAATGTCAAGAAGAATAAACATATTGAGGTAGCAATGGTAGGAGAAAAAGGAGGAGAAAACCTGGAGTCATGTGA---ATCAAGATAGCGTTGTCCAGCTCCAAATAGTTGGTT-GTATAAT-ATATAATCTCCAAGGGAAGCAAGAAGGCTTTTGGATTAAACAAATCTATCTCAGCGATTTGAAACTGAACAAGAAAATTAAATACTTTT---ATTGTCCATTTTCTCAAGTATAAATTGAGAGAATTAACCTACAATGACAAAG-TTTCCCTATGCTCAGGAATTTTGTTTT----GCATTCT--TGGGCTTTTATT---------CATTACGATTTAGTTCAACCTTTGGGCATTTGATATTTTATGTTAAATTTTAGCTAGC--ATTCATTTTGAAAAAA-A---ATTTTTATTCAATGAGATTATC--ATCTTGTTTTAGTATAAGAGTTTGGATAGTTGTCATGACCTACTGATTGTACGTAACTACAAATATGTCTTTTAGTTCCAAGTGACTGCTGTCAGGACAAAAGTCGATGTCCCGGTTTAGGCTCAGAGAC--AGTCAAATCT-G-AAATTA-TTTCACGACCTTT------CAAGACCTTTCCTTTTTTTTTTTTTT-C-----AGCTAAAAAGTACTTTGATATACCAACATCAGCTAGTTTAGTGAAGCAGTATTTTGAGAAAG-TTAATT--------TTTTGCTCATATGC---------TTTTAGTGGTGACATGTGTTTTATG-AGATCACAATTCTCTGCAGGATGAGAAATATTCAGTCAAAAAGTTAAGATA--GCATCTCCGTAACAACATTCTGAGTCACTCTGC-CAGTCAATTAGTTGTTTCATGCTAGCAGATTACATTTATAAGTTTATAAAGCACAGCTTCCACATTCTCTGCTTCATTACATCTTCAAAGTCATCCTCTGAGGAGTCACACAGAGCTACTCAGGGCTAACATGTGAATGTTGCCCTTTGATTATATGCTAT-CTTAGGCCAGAAGTGTGCA-----A-AACAATAAT--AATACTCTTTCCAACTAGTCCTTAGTGAAACCTCTGTGT---------CAAACACCCCCATATGCTTTTTATAC-CATTAAATCATTTAGTATCCATCCCCAAA-TGCTATGACAACGAAAATTTTGGTATCCATATTTTAAGATA-TTGTTAATCATTTGTTTCCATACTCTGCTAATAACTAAGAACATTCTAAAGATTGAAAAGTAATCGCTGCTTTAAATGAGGTAATGAAATATTGAGACTATAAA--
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2181233 1942 -   3067355 CAGCATCTGAGGGACAATGCTTGTGGTGTAACACATGTCCAAAAAGGAGAGGTTGGCGAGGAAGAAATACATGGGGCTGTGAAGACGAGAGTCTAACCTGGACACCAGAATGATTGTGATGTTTCCCATCATGGCTATGGGGTACGTTATAAGAAGACTAGTGAACAGAGGAAGCTCTAGCCAAGGGCGGTCTGCAAAGCCTAACAGAGTAAATTCTTCAGGACGGCTTTCATTAATTAGTGGCATTATCTTCAATTTGTTT----CACCTGTAGTAGGGATGTGCCAAAGAAGGCA----GAGTTATGGGCATGGACAAGACATGGTGATGCATTGATTATCTACTTATAGATGACAGGGTGCAGTAACCTGGGGTCAGAATAACATAAAACATCTGGTATCAGGTGATCTTATTTTCCCACACGACACTACAAATTAAAGGCAgttatcttaatccagt-aacccaaccattttgaaacagaatttcttcttctg-------------------------tgtaagaaggc-----tga--caataacca-----------tcattcttgagtgaggtgacgattaaatACA-------------------------------------------------------------------------AAGTAGAAGTGACTA--------------------TTTTGGAAACTTCAAAATAACAGTTtttt-----------------------------------------------------------------------------------------------caatctttgagttgcataaaaatcagctgaggaggttgctagaatgaaatttattgtttcctatctttaggtgtctgatagagtaaatgtggcct---ggggctgaggaaCAGGATGGCTTATTTTCAGAAACCCTGCTGCAAGGAATTACTGAAATGTCAAGAAGAATAAACGTATTGAGGTAGCAACGGTAGGAGAAAAAGGAGGAGAAAACCTGGAGTCATAAGAATCATCAAGATAGCGTTGTCCAGTTCCAACTAGTTGGTTGGAATAATCATATCGTCTCCATGGGAAGCAGGAAGACTTTGGATTTAAACAAATCTATCTGAGCAATTTGAATTTGAACAAGAAAATTAAATCTTTTT---ATTGTTCATTTCCTCAAGTATAAATTGAAGGAGTTAACCTACAATGGCAAGG-TTCTCCTATGATGATGAATTTGGTTTT----GCATTTT--TGGGGTTTTATT---------CATTACTATTTAGTCCAATCATTGGACATTTGATATTTTATGTTACATTTTAGCTTACTTACTCATCTTGAAGAAATA---TTTTTTATTCAGTGAGATTATC--CTC-TGTTTTAAT---AGAGTTTGGACAGTTGTCATTACCCACTGATTGTACATAACTACAAATATGTATTTTAGTTCTAAGTAACTGCTGTCAGGAGAAAAGTGGAGGTCCCAATTTAGGCTCAGAGAC--AGTCAAATCT-G-AAATTA-TTTTACA--TTTT------CAAGAC----------TTTTTTTTTT-C-----AGCTAGAAAGCAGATTGATATACTAACATCAACTAGTTTAATGAAGCAGTATTTTGAGAAAGATTAATT--------TCTTGCTAATATGC--TTTTTTTTTTTCGTGGTGATGTGTGTTTTATGAAAATCACAATCTCCTGCAGGATGAGAAATATTCAGATGGAAAGTTAAGATA--GCATCTCAGTGACAACATTCTGAGTCACTCTGC-TAGTC----AGTTGTTTAATGGTAATAGATTACATTTATAAATTTATAAAGCACAGCTTCCACATTCACTGTTTCATTACATCTTCAAAGTCATCCTCTGAGGTGTCACACAGAGCTACTCAGGGCTAACATGTGAATGTTGCCCTTTGATTATATGCTAT-CTTAGGCCAGAAGTGTGCA-----A-AACAATAAT--AAAACTCTTTCCAAATAGTCCTTAATGAGCCGTCCATGT---------CAAACATTCCTATATACTTTTGATAC-CATTAAATAGTTTAGTATCCATGCCCAAA-TGCTGTGACAAAGAAAATTTTAGTATCCATATTTTAAGATA-TTGTTAATCATTTATTTTCGTACTCTGGTAATGACTAAGAACATTCTAAAGATTGAAAAGTAACCGTTGCTTTAAATGAGGTGATAAAATATTGAGACTATAAA--
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1727796 2106 -   2232465 CAGCATCTGAGGGACAATGCTCGTAGTGTAGCACATGTCCAAAAAGGAGAGGTTGGTGAGGAAGAAATACATGGGGCTGTGAAGACGAGAGTCCAGCCTGGACACCAGAATGATGGCAATGTTTCCCATGATAGCCATGGGGTATGTTATGAGAAGAATAACAAACAGAGGAAGCTCTAGCCAAGGACGGTCGGCAAAGCCTAGTAGAATAAACTCTTCAGGGTGGCTTTCATTAATTAGTGGCATCATCTTCATTGTGTAT----CACCTAGAATAGGGAAGAGGTGAAGAAGTTA----AGACTTACGGCAATGACAAAGT---GTGATGCATTGGTTGTCCACTTATAGA-AATAGGGAGCAGTAAGTTAAGGTCAAAATAACATAAAGGATCTAGTACCATGTGATCTAATTTCCCTTTGTGACACTACAAATTA-------------------AGT-AACCCAACCATTCTGAAACTGAATTTCCTTCTCTGCAGAAGTGACTTTTCAAATTTGGTTTGTAggatggtatctgtggctcaatgagtaagaacctgcccccattc-cgagggtggtg-ggtttgaacccagtccggccaaactgcaccaaaaatatagctgggcgttgtggggcacctgtagtcccagctacttgggaggctgaggcaagagt-attg--------------------cctag--------------------ttccaagagctgaaggttgctgtgagctgtgatgccacaggactctaccaagggtgacaaagtaaaactctgtctctacaaaaaaagtaaaaaaTGAAACAAACTTTGGGTTGCTTAACAATCAGTTGAGGAGGCTGTTAGAATGATGTTTATGGGT-----TTTTCAGGTGTCTGATAGAGGAGAGGTGGCAT--GGGGGCCAAGGGATTGGATAGTTTATTTTCAGAAACACTG-TGCAAGCCATTTCTGAAATGTTGAGAAAGGTGAAAGGATTGAGGTAGCAGTGGTGCAAGGAAAAGGAGGCGCGCACATGGAGCTATCAGCATCATCAACACAGCCTT-TCTAGTCCCAGCTAGTTAGTT-GAATAATCATAGTATCTCCacagggaataaaaagactttggatttaaataagtctaccttagtgatttgaaattgaacaagaaatttaaacactttt---atcctcagttccctgagatataaattgggagagttaagctgcaatgacagagatttctccatgctcaggaattTGTTTCT----GCATTTTCATGGATTTTTTTTTTTTTTTTGCAATACTATTTAGCTCAACATTTGGGCATATGATCTTTCATGTTAAATTTTAGGTAATTTATCCATCTTGAAGACC-ATTTTCTTTTATCAAGTGAGATTACA--ATCCCATTTTAATATGAGAGTTTGGTCAGTTATCATGACCCATCAATTGTACATAGCTACAAATATATTTTTTAACTCCAAGTAATAGCTATTAGGAGAAAAGTCAATATCCAAATTCAGGTCCAGCAAC--ACTCAAATCCAG-AAATTGTTTTTACA--TTTT------CAGGACATTCCT-------TGTGTTT-T-----GGCTAAAGAGCCCACTGAAACAACAAAATCAATTAACTGAGTGAAACAGTATTTTAAAAAAGATTAATT--------TTTTGTTTATGCATATCTTTTTATTTTAGTGGTA--GTATAGCTCATGAAAGTCACAATCTTCTGTAAAATGAGAAATATTAAGATGGG-----ATAATA--GTATCCCACTGATGAAATTTTGAGTCACTTAACTCTGTCAATTAGTGTTTTCATGATAGCAGATTATATTTATAGGTTTACAAAG--CAGTTTCCACATTCTCTGTTTCCTTAAATCCTC--AGCCATACTCTGAAGTTTAATACAAAGCTACTCAGTAATAAGATATAAATGTTGCCC------------ATAT-TCTACACCAGAAATGTGCA-----ATAACAACAATAAAATAATAATTCCAAGTGATCTTTATTGAGTCTTATATGC---------CAAATATTCCAATAAGCTTATTACACTCATTAAA----TTAGCA-CATTCCCCAAA-TCCTATAACAAAGGACATTTTCATATCTATGTTTTAGGATA-TCATTAATTATTCATTCCCAAGGCCTGCTAAGGACTAGGGATATTCTGAAGATAAAATAGCAATCAATGCCTTAAATGAGCTAGGGAGATATTGAGATTATAAA--
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            324308 1924 -    859332 AAGCATCTGGGGGACAATGCTTGTGGTGTAGCACATGTCCAAAAAGGAGAGGTTGGTGAGGAAGAAGTACATGGGGCTGTGCAGACGGGGCTCTAACCTAGACACCAGGATGATGGAGATGTTTCCAGTCATGGCCATAGGGTATGTTATGAGAAGAAGAATGAACAGAGGAAGCTCCAGCCAAGGGCGGTCAGCGAAGCCTAGTAGAATAAACTCTTGGGGGTGGCTCTCGTTAATTAGTCCCATCATCTTCCATTTGATTCAAACACTTACACTATCGAAGTCCTAAGAAATATAGAAGGAGTTACGAAAAATGGAAAAACGTGATTATACATTGATCATCCACTCACATCTGGCAGTGGGTAGTAACCTTAGGGGAAAATAA---------------AGCAGATAACCAAATTACCCTTTATCACAGTGGAAATTAAAGTCAATCatcttaaggaagtaaacataaccattctgaaactgaatatcctcctcca-------------------------tataatgaggg-----tga--aaatagtta-----------tttcctttacttgtgatgaagattaaatgaa-------------------------------------------------------------------------aATCAGACGTGAATAAGTCTCTGAAATTCCAAAGcaatgg--------------------cttt-----------------------------------------------------------------------------------------------gaatctttggcttgca---aactcaaccaggtatgctgttaaaatgcatgttattggttcttgtctcta-gtgtctgataaagtaggtgtgtttttatggggcccaagaatCATTAGATTCATATGCAGAAATGCTGTTGAAAAGCATTTCTAAAATGTCAAGA---TTCAAAGTACTGAAGTGACGTT--------AAGAAGAAGGAGGTATTCTCGCACTTTGGTAATCATCAAGGTAGTCATCACCAGCTCCCTGCAGTTAAAG-GAATGATTATGTCATCT-TACAAGAATTAAGAA---CTCTAATTGAAAGAAATCTATCTTATTGATGTGAAATTAAGGAAGAAACTT--ATTTTTTTAAAATATTCAATTTGTTCAAGCATATAC--AGAGATTTGAACTAC-TTGACATAG-GTTTTCCATGATTGAGAATTTTATTTTTGCAGCATTTT--T---TTTTTGCA---------TAGAACTATTTAGTTCATATGTCAGGCATCTGAGCTTTCATGGAAACCTTATGCTAATTTGTCAGTCTTCTAGGAA-A---ATTCCTAC---ATGCATTTGTCTTATTCTGTTTTA-TATAAGACTTTGGATTCTT--------------------CATACTTAAAAATATATGTGTAAAC-CAAGGAAACTGTAGTCTGGAGAAAAGTCTGTGCCCTAATTCA-CTTCAGAGACTTATTCAAGTGA-ATAAATTA-TTTTAGG--TTTTTTGGGACATGCTCTTTCC------TTTTTTCT-CAAAAAAAAAAAAAAGCACATTAAGATAACAAAAGTAACTAGTCAAATGAATTACCATTGTGACAACAGTTAGGTAATGAGACCTTTGTTAATGTTT----TCTTCCTTTAGTGTTAAAATGT--TTCATGTAATCAATAACCTTGTGTAAGATG-GGAGTATTCAGATGGA-AGTTAAGACAAGGCATCCAGTTGACAAAAGTTTGAATTAATCTGT-TAGTCCATTAGTAGGGAAAGCAAAAGAGATTTTATTGGTAGAATT-TAAAGAACAGTTTTCATATTTTTATTTT--TTAAGTCTTTACAACTACCCAGTGTGTGCTCAAAGTAAGCTAATAATGG-TAAAGTATGAACACTTCCCTTCCATTACC--CTGTCCTTGCCCCTACAGTGCCTACCATGA-TAGGACAAT--AACGATAATTGCAGCTAATCCTTGAAGAG-CATTTGCATGGCTCTTAGCTCATATTTCCACAAG-----------CATTAAGTCATTTAATACCCTTTCCCAAACCCCTACACCACAGGAATTTTTAGTCCACCTCCTTCTGGATATTTGTTGACCATTGATTTCTATAGTCTACTAATAATCAAGGAAGTGCCAAAGATGGAAAAGTAATCAATGTCTT-TATGAAGTAGTGAGGTAAGGAGATTCTATACA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=58126.000000
s hg38.chr6_GL000254v2_alt    406232 36 +   4827813 CTCAGAGTTTCAAGAGCCCC-AGAAAGCATCTGTACT
s panTro5.chr6              29380852 36 + 175400573 CTCAGAGTTTCAAGAGCCCC-AGAAAGCATCTGCACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29626561 36 + 173848474 CTCAGAGTTTCAAGAGCCCC-AGAAAGCATCTGCACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5423370 36 +   6154872 CTCAGAGTTTCAAGAGCCCC-AGAAAGCATCTGTACT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29325119 37 - 170955103 CTCAGAGTTTCAAGATTCCCGAGAAAGCATCTGCACC
i macFas5.chr4             I 81681 T 81718
s cerAty1.NW_012001495v1     2128622  1 -   2157725 ------------------------------------C
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28549164 36 -  71996105 CTCAGAGTTTCAAGAGCCCC-AGAAAGCATCTGTACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2271362  1 +   2316924 C------------------------------------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2183175 37 -   3067355 CTCAGAGTTTCAAGATTCCTGAGAAAGCATCTGCACC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1729902 37 -   2232465 TTCAGAGTTTCAAAATTCCAAAGAAGGCAGCTGTACT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            326232 37 -    859332 TTTAGGATCTTAATATTCTGGAAAGAGCATCTGTACT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e macNem1.NW_012011356v1     2250120  0 -   2996164 C
e rheMac8.chr4              29582201  0 + 172585720 C
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=744890.000000
s hg38.chr6_GL000254v2_alt    406268 159 +   4827813 CGAGGGTTG-TTCCTGAATGAGTGTGACCCCCTTCACATT-ATTTGACCTTGAT-TTAATCAAGATGTTATATGAGTGCATCAAATTTAGAAATATGTCTTGGCCTGAGTGCTTTTTCAGATGAAAATCC------GTATTGGAAATG-----------AAAGATG-AAATAAAGGCATG-----
s panTro5.chr6              29380888 159 + 175400573 CGAGGGTTG-TTCCTGAATGAGTGTGACCCCCTTCACATT-ATTTGACCTTGAT-TTAATCAAGATGTTATATGAGTGCATCAAATTTAGAAATATGTCTTAGCCTGAGTGCTTTTTCAGATGAAAATCC------GTATTGGAAATG-----------AAAGATG-AAATAAAGGCATG-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29626597 159 + 173848474 CGAGGGTTG-TTTCTGAATGAGTGTGACCCCCTTCACATT-ATTTGACCTTGAT-TTAATCAAGATGTTATATGAGTGCATCAAATTTAGAAATATGTCTTAGCCTGAGTGCTTTTTCAGATGAAAATCC------GTATTGGAAATG-----------AAAGATG-AAATAAAGGCATG-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5423406 159 +   6154872 CGAGGGTTG-TTCCTGAATGAGTGTGACCCCCTTCACATT-ATTTGACCCTGAT-TTAATCAAGATGTTGTATGAGTGCATCAAATTTAGAAATATGTCTTGGCCTGAGTGCTTTTTCAGATGAAAATCC------ATATTGGAAATG-----------GAAGATG-AAATAAAGGCATG-----
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29582201 158 + 172585720 CGAGGGTTG-TTCCTGAATAAG-GTGACCCCTTTCACATT-ATTCGACCTTGAT-TTAATCAAGATGTTGTATGAGTGCATCAAATTTAAAAATATGTCTTGGCTTGAGTGCTTTTTCAGATGAAAATCT------GTGTTGGAAATG-----------GAAGATG-AAATAAAGGCATG-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29243438 158 - 170955103 CGAGGGTTG-TTCCTGAATAAG-GTGACCCCTTTCACATT-ATTCGACCTTGAT-TTAATCAAGATGTTGTATGAGTGCATCAAATTTAAAAATATGTCTTGGCTTGAGTGCTTTTTCAGATGAAAATCT------GTGTTGGAAATG-----------GAAGATG-AAATAAAGGCATG-----
i macFas5.chr4             T 81718 C 0
s macNem1.NW_012011356v1     2250120 158 -   2996164 CGAGGGTTG-TTCCTGAATGAG-GTGACCCCTTTCACATT-ATTTGACCTTGAT-TTAATCAAGATGTTGTATGAGTGCATCAAATTTAAAAATATGTCTTGGCTTGAGTGCTTTTTCAGATGAAAATCT------GTGTTGGAAATG-----------GAAGATG-AAATAAAGGCATG-----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2128623 157 -   2157725 -GAGGGTTG-TTCCTGAATAAG-GTGACCCCTTTCACATT-ATTCGACCTTGAT-TTAATCAAGATGTTATATGAGTGCATCAAATTTAAAAATATGTCTTGGCTTGAGTGCTTTTTCAGATGAAAATCT------GCGTTGGAAATG-----------GAAGATG-AAATAAAGGCATG-----
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28549200 158 -  71996105 TGAGGGTTG-TTCCTGAATAAG-GTGACCCCTTTCACATT-ATTCGACCTTGAT-TTAATCAAGATGTTATATGAGTGCATCAAATTTAGAAATATGTCTTGGCCTGAGTGCTTTTTCAGATGAAAATCT------GTATTGGAAATG-----------GAAGATA-AAATAAAGGCATG-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2271363 157 +   2316924 -GAGGGTTG-TTCCTGAATAAG-GTGACCCCTTTCACATT-ATTCGACCTTGAT-TTAATCAAGATGTTATATGAGTGCATCAAATTTAAAAATATGTCTTGGCTTGAGTGCTTTTTCCGATGAAAATCT------GCGTTGGAAATG-----------GAAGATG-AAATAAAGGCATG-----
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2183212 160 -   3067355 TTAGGGTTGTTTCCTGATTGAGTGTGACCCCCTTCACATT-ATTCGACCTTGAT-TTAATGAAGATGTTATATGAGTGCATCAAATTTAGAAATAAGTCTTGGCCTGAGTGCTTTTTCAGGTGAAAATCT------GTGTTGGAAATG-----------GAAGATG-AAATAAAGGCATg-----
i colAng1.NW_012115566v1   C 0 I 319
s otoGar3.GL873742           1729939 149 -   2232465 CTAGCAATATTTCTTAAATGGATGTGGCCCC-TACACATT-ATTT-------------------AGGATATGTG-GTCCaacctgtgcagaataata--ctgcactgaatactgtaggcaattataataa------a-attgtaaatattcatatgtccaaatatgtctatctagacata-----
i otoGar3.GL873742         C 0 I 3
s dasNov3.JH570037            326269 160 -    859332 CTTGGGATGTTTTCTGAACAAATGCTGCCTCTAACACCCTAATTAGGCTTTGACATTATTCAAGATGTTACATGAGCATGCAGAATTTATAA-CAAGCTTTGGGCTAAGTG------------AAAACTTCATGTCATGTCATAGGTG-----------GGGTATG-AAATAAAACTATGGTATG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=174504.000000
s hg38.chr6_GL000254v2_alt    406427 34 +   4827813 ATATAAACTAATTTGATGTCAAAATAA-----------AT------Acagt
s panTro5.chr6              29381047 34 + 175400573 ATATAAACTAATTTGATGTCAAAATAA-----------AT------Acagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29626756 34 + 173848474 ATATAAACTAATTTGATGTCAAAATAA-----------AT------Acagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5423565 34 +   6154872 ATATAAACTAATTTGATGTCAAAATAA-----------AT------Acagt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29582359 34 + 172585720 ATATAAACTAATTTGATGTCAAAATAA-----------AT------ATagt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29243596 34 - 170955103 ATATAAACTAATTTGATGTCAAAATAA-----------AT------Acagt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2250278 34 -   2996164 ATATAAACTAATTTGATGTCAAAATAA-----------AT------Acagt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2128780 34 -   2157725 ATATAAACTAATTTGATGTCAAAATAA-----------AT------Acagt
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28549358 51 -  71996105 ATATAAACTAATTTGATGTCAAAATAATACAGTCATACATAGCTTAAcagt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2271520 34 +   2316924 ATATAAACTAATTTGATGTCAAAATAA-----------AT------ATagt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2183691 34 -   3067355 ATATAAGTTAATTTGATGTCAAAATAA-----------AT------Acagg
i colAng1.NW_012115566v1   I 319 C 0
s otoGar3.GL873742           1730091 34 -   2232465 atctaagcacatttaaacttagaaaag-----------gt------acagt
i otoGar3.GL873742         I 3 I 326
s dasNov3.JH570037            326429 30 -    859332 ATTTAAACTAATT----GTTAAAATAA-----------GC------ATCCT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=37180.000000
s hg38.chr6_GL000254v2_alt    406461 7 +   4827813 catacat
s panTro5.chr6              29381081 7 + 175400573 catacat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29626790 7 + 173848474 catacat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5423599 7 +   6154872 catacat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29582393 7 + 172585720 catacat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29243630 7 - 170955103 catacat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2250312 7 -   2996164 catacat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2128814 7 -   2157725 catacat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28549409 7 -  71996105 catacat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2271554 7 +   2316924 catacat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2183725 7 -   3067355 catgcat
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            326459 7 -    859332 AAAACAT
i dasNov3.JH570037         C 0 I 12
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1730125 326 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1033728.000000
s hg38.chr6_GL000254v2_alt    406468 227 +   4827813 agcttaacaagaggaatatagtctgagaaatgtattgttaagtgattttgtcattgtgtgaatataatagagtgcacttacacaaacttagatggtatggcctagtacacacttatgctatgtgatatagcctattgctcctaggctacaaacttgtgcagcatgttaccttactgaatactgtggacaatcataattcaatggtaagtatttatgtattaagcgta
s panTro5.chr6              29381088 227 + 175400573 agcttaacaagaggaatatagtctgagaaatgtattgttaagtgattttgtcattgtgtgaatataatagagtgcacttacacaaacttagatggtatggcctagtacacacttatgctatgtgatatagcctattgctcctaggctacaaacttgtgcagcatgttaccttactgaatactgtggacaatcataattcaatggtaagtatttatgtattaagcata
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29626797 227 + 173848474 agcttaacaagaggaatatagtctgagaaatgtattgttaagtgattttgtcattgtgtgaatataatagagtgcacttacacaaacttagatggtatggcctagtacacacttatgctatgtgatatagcctattgctcctaggctacaaacttgtgcagcatgttaccttactgaatactgtggacaatcataattcaatggtaagtatttatgtattaagcata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5423606 227 +   6154872 agcttaacaagaggaatatagtctgagaaatgtattgttaagtgattttgtcattgtgtgaatataatagagtgcacttacacaaacctagatggtatggcctagtacacacttatgctatgtgatatagcctattgctcctaggctacaaacttgtgcagcatgttaccttactgaatactgtagacaatcataattcaatggtaagtatttatgtattaagcaca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29582400 227 + 172585720 agcctaacaagagcgatatagtctgagaaatgcattgttaagtggttttgtcattgtgggaacataatagagtgcacttagacaaacctaggtggtatagcctactacacactgaggctatatgatacagcctatagctcctaggctacaaacttgtgcagcatgttactgtactgaatactgtagacaattgtaatacaatggtaagtatttatgtattaagcata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29243637 227 - 170955103 agcctaacaagagcgatatagtctgagaaatgcattgttaagtggttttgtcattgtgggaacataatagagtgcacttagacaaacctaggtggtatagcctactacacactgaggctatatgatacagcctatagctcctaggctacaaacttgtgcagcatgttactgtactgaatactgtagacaattgtaatacaatggtaagtatttatgtattaagcata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2250319 227 -   2996164 agcctaacaagagcgatatagtctgagaaatgcattgttaagtggttttgtcattgtgggaacataatagagtgcacttagacaaacctaggtggtatagcctactacacactgaggctatatgatacagcctatagctcctaggctacaaacttgtgcagcatgttactgtactgaatactgtagacaattgtaatacaatggtaagtatttatgtattaagcata
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2128821 227 -   2157725 agcctaacaagagcgatatagtctgagaaatgcattgttaagtggttttgtcattgtgggaacataatagagtgcgcttagacaaacctaggtggtatagcctactacatactgaggctatatgatacagcctatagctcctaggctacaaacttgtgcagcatgttactgtactgaatactgtagacaattgtaatacaatggtaagtatttatgtattaagcata
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28549416 227 -  71996105 agcttaacaagagcgatatagtctgagaaatgcattgttaagtggttttgtcattgtgggaacataatagagtgcacttacacaaacctagatggtatagcctactacacactgaggttatatgatacagcctatagctcctaggctacaaacttgtgcagcatgttactgtactgaatactgtagataattataatataatggtaagtatttatgtattaagcata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2271561 227 +   2316924 agcctaacaagagcgatatagtctgagaaatgcattgttaagtggttttgtcattgtgggaacataatagagtgcacttagacaaacctaggtggtatagcctactacacactgaggctatatgatacagcctatagctcctaggctacaaacttgtgcagcatgttactgtactgaatactgtagacaattgtaatacaatggtaagtatttatgtattaagcata
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2183732 227 -   3067355 agcttaacaaaagggatacattctgagaaatgcattgttaagtgattttgccattgagtgagcataatagagtgcacttacacaagcctagatggtatagcctactacacaccttggctatatgttatagcttattgctcctaagctacaaacttgtgcagcatgttactttattaaatactgtagacaatcgtaacacaattgtaagaatttatgtattaagcata
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            326466  12 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1730125 326 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=4701284.000000
s hg38.chr6_GL000254v2_alt    406695  970 +   4827813 tataaaaatagaaaaggtacaataaaatatggtataaaagataaaaaatggtatacctatattgggcacttaccataaatggatcttgcaggacttgaagttgctctgg----gtgagtcagtgagtgaatggtgagggaatgt---------------------------gaaggcctagaccactactgtacactactatagactttgtaaaca--ct-gtctatagcctacactaaatttacta-aaaaacacttt-tctctgtttaataataaattcattttagctaactgtaacatttttacttcataaacttcttaatttctttaa-ctttttgattatt--gaataaca-----cttaaac-------ccatcatacagctgtacaaaagtatgttctttgtttatatccttattctataaattat-----------------ttctatttttttaagttttttaac-ttttttgttaaaaatgaagacacaaacacacacatta---gcccaggcctacacagggtcaggatcatcaatatcattgtcttccagct-----ccttgtcccactggaaggttttcaggggcaataacatgcatggagctgtcatctcctatgattataataacaatatcttcttctggtatacttgctgaaagacttgtgtgaggctgttttacagttaac-----tttt-----taaaaataagtaggagtataaa-------aaatca----taaaaagtatagtatagcaaaaatataaaccagtaacatatttat---ttatcatcatcaagtattatgtactgcacacaattttatgtgttattcttttatatgactggcagtgc---ag---gtttgattatacc-gtcatcactgcaaacacttgagtaatgtgttacattataacattatcat-ggatacagtgtcactaggcaacaggaa-ttttttagctccattgtaatctt-atgggaccactgttgaacacatgcatggtcagtcattg-----atgaaaatgtcattatgtggtgcatgcctgTATTCTGAGAATTGCAAATTA----C
s panTro5.chr6              29381315  966 + 175400573 tataaaaatagaaaaggtacaataaaatatggtataaaagataaaaaatggtatacctgtattgggcacttaccataaatggatcttgcaggacttgaagttgctctgg----gtgagtcagtgagtgaatggtgagggaatgt---------------------------gaaggcctagaccactactgtacactactatagactttgtaaaca--ct-gtctatagcctacactaaatttacta-aaaaacacttt-tctctgtttaataataaattcattttagctaactgtaacatttttacttcataaacttcttaatttctttaa-ctttttgattatt--gaataaca-----cttaaac-------ccatcatacagctgtacaaaagtatgttctttgtttatatccttattctataaattat-----------------ttctatttttttaagttttttaac-ttttttgttaaaaatgaagacacaaacacatacatta---gcccaggcctacacagggtcaggatcatcaatatcattgtcttccagct-----ccttgtcccactggaaggttttcaggggcaataacatgcatggagctgtcatctcctatgattataataacaatatcttcttctggtatacttgctgaaagacttgtgtgaggctgttttacagttaac-----tttt-----taaaaataagtaggagtataaa-------aaatca----taaaaagtatagtatagcaaaaatataaaccagtaacatatttgt---ttatcatcatcaagtattatgtactgcacacaattttatgtgttattcttttatatgactggcagtgc---ag---gtttgattatacc-atcatcactgcaaacacttgagtaatgtgttacattataacattatcat-ggatacagtgtcactaggcaataggaa-ttttttagctccattgtaatctt-atgggaccactgttgaaca----catggtcagtcattg-----atgaaaatgtcattatgtggtgcatgcctgTATTCTGAGAATTGCAAATTA----C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29627024  965 + 173848474 tataaaaatagaaaaggtacaataaaatatggtataaaagataaaaaatggtatacctgtattgggcacttaccataaatggatcttgcaggacttgaagttgctctgg----gtgagtcagtgagtgaatggtgagggaatgt---------------------------gaaggcctagaccactactgtacactactatagactttgtaaaca--ct-gtctatagcctacactaaatttacta-aaaaacacttt-tctctgtttaataataaattcattttagctaactgtaacatttttacttcataaacttcttaatttcttcaa-ctttttgattatt--gaataaca-----cttaaac-------ccatcatacagctgtacaaaagtatgttctttgtttatatccttattctataaattat-----------------ttctatttttttaag-tttttaac-ttttttgttaaaaatgaagacacaaacacatacatta---gcccaggcctacacagggtcagggtcatcaatatcattgtcttccagct-----ccttgtcccactggaaggttttcaggggcaataacatgcatggagctgtcatctcctatgattataataacaatatcttcttctggtatacttgctgaaagacttgtgtgaggctgttttacagttaac-----tttt-----taaaaataagtaggagtataaa-------aaatca----taaaaagtatagtatagcaaaaatataaaccagtaacatatttgt---ttatcatcatcaagtattatgtactgcacacaattttatgtgttattcttttatatgactggcagtgc---ag---gtttgattatacc-atcatcactgcaaacacttgagtaatgtgttacattataacattatcat-ggatacagtgtcactaggcaataggaa-ttttttagctccattgtaatctt-atgggaccactgttgaaca----catggtcagtcattg-----atgaaaatgtcattatgtggtgcatgcctgTATTCTGAGAATTGCAAATTA----C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5423833  966 +   6154872 tataaaaatagaaaaggtacaataaaatatggtataaaagataaaaaatggtatacctgtattgggcacttaccataaatggatcttgcaggacttgaagttgctctgg----gtgagtcagtgagtgaatggtgagggaatgt---------------------------gaaggcctagaccactactatacactactatagactttgtaaaca--ct-gtctatagcctacactaaatttacta-aaaaacacttt-tctctgtttaataataaattcattttagctaactgtaacatttttacttcataaacttcttaatttctttaa-ctttttgattatt--gaataaca-----cttaaac-------acatcatacagctgtacaaaagtatgttctttgtttatatccttattctataaattat-----------------ttctatttttttaacttttttaac-ttttttgttaaaaatgaagacacaaacacacacatta---gcccaggcctacacagggtcaggatcatcaatatcattgtcttccagct-----ccttgtcccactggaaggttttcaggggcaataacatgcatggagctgtcacctcctatgattataataacaatatcttcttctggtatacttgctgaaagacttgtgtgaggctgttttacagttaac-----tttt-----taaaaataagtaggagtataaa-------aaatca----taaaaagtatagtatagcaaaaatataaaccagtaacatatttgt---ttatcatcatcaagtattatgtactgcacacaattttatgtgttattcttttatatgactggcagtgc---ag---gtttgattacacc-atcatcactgcaaacacttgagtaatgtgttacattataacattatcat-ggatacagtgtcactaggcaataggaa-ttttttagctccattgtaatctt-atgggaccactgttgaaca----catggtcagtcactg-----atgaaaatgtcattatgtggtgcatgcctgTATTCTGACAATCGCAAATTA----C
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29582627  979 + 172585720 tataaacatagaaaaggtacaataaaatatggtataaaagataaaaaatggtatacctgtattgggcacttaccatgaatggagcttgcaggacttcaagttgctctgggtgagtgagtgagtgagtgagtgctgagtgaatgt---------------------------gaaggcctagaccactactgaacactactttagactttgtaaaca--ct-acatttagcctacactaaaattacta-aaaaaca-ttt-tctctctttaacaataaattcattttagctaactacaacatttttacttcataaacttcttaatttccttag-ctttttgagtatt--taataaca-----cttaaaa-----------catacagctgtacaaaagtatgttctttgcctatatccttattctataaattcttttc-------------ttttttttttttaacttgttaaac-ttttttgttaaaaatgaagacacaaacacacatatta---gcccaggcctacacaaggtcaggatcatcaatataattgtcttccaactccacaccttgtcccactggaaggttttcaggggcagtaacatgcatgaagctgtcatctcctatgataataataacaatattttcttctggtatacttgctgaaagacttgtgtgaggctgttttactgttaac-----tttt-----taaaaataagtaggagtat-aa-------aaatca----taaaaattatagtacaggaaaaatataaaccagtaacgtatttgt---ttatcatcatcaagtattatgtactgcacacaattgtatgtgttattcttttatataactggcagtgc---ag---atttgattacacc-agcatcactgcaaacacctgagtaatgtgttacattatgacattatcat-agatacagtgtcattaggaaataggaatttttttagctctgttgtaatctt-atgggaccagtgttgaaca----cgtggtcagtcattgatgaaatgaaaatgtcattatgtggtgcatgcctgTATTCTGAGAATTGCAAATTA----C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29243864  979 - 170955103 tataaacatagaaaaagtacaataaaatatggtataaaagataaaaaatggtatacctgtattgggcacttaccatgaatggagcttgcaggacttcaagttgctctgggtgagtgagtgagtgagtgagtgctgagtgaatgt---------------------------gaaggcctagaccactactgaacactactttagactttgtaaaca--ct-acatttagcctacactaaaattacta-aaaaaca-ttt-tctctctttaacaataaattcattttagctaactagaacatttttacttcataaacttcttaatttccttag-ctttttgagtatt--taataaca-----cttaaaa-----------catacagctgtacaaaagtatgttctttgcctatatccttattctataaattcttttc-------------ttttttttttttaacttgttaaac-ttttttgttaaaaatgaagacacaaacacacacatta---gcccaggcctacacaaggtcaggatcatcaatatcattgtcttccaactccacaccttgtcccactggaaggttttcaggggcaataacatgcatgaagctgtcatctcctatgataataataacaatatcttcttctggtatacttgctgaaagacttgtgtgaggctgttttactgttaac-----tttt-----taaaaataagtaggagtat-aa-------aaatca----taaaaagtatagtacaggaaaaatataaaccagtaacgtatttgt---ttatcatcatcaagtattatgtactgcacacaattgtatgtgttattcttttatataactggcagtgc---ag---atttgattacacc-agcatcactgcaaacacctgagtaatgtgttacattatgacattatcat-agatacagtgtcattaggaaataggaatttttttagctctgttgtaatctt-atgggaccagtgttgaaca----cgtggtcagtcattgatgaaatgaaaatgtcattatgtggtgcatgcctgTATTCTGAGAATTGCAAATTA----C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2250546  981 -   2996164 tataaacatagaaaaggtacaataaaatatggtataaaagataaaaaatggtatacctgtattgggcacttaccatgaatggagcttgcaggacttcaagttgctctgggtgagtgagtgagtgagtgagtgctgagtgaatgt---------------------------gaaggcctagaccactactgaacactactttagactttgtaaaca--ct-acatttagcctacactaaaattacta-aaaaaca-ttt-tctctctttaacaataaattcattttagctaactagaacatttttacttcataaacttcttaatttccttag-ctttttgagtatt--taataaca-----cttaaaa-----------catacagctgtacaaaagtatgttctttgcctatatccttattctataaattcttttc------------tttttttttttttaacttgttaaac-ttttttgttaaaaatgaagacacaaacacacacatta---gcccaggcctacacaaggtcaggatcatcaatatcattgtcttccaactccacaccttgtcccactggaaggttttcaggggcaataacatgcatgaagctgtcatctcctatgataataataacaatatcttcttctggtatacttgctgaaagacttgtgtgaggctgttttactgttaac-----tttt-----taaaaataagtaggagtat-aa-------aaatca----taaaaagtatagtacaggaaaaatataaaccagtaacgtatttgt---ttatcatcatcaagtattatgtactgcacacaattgtatgtgttattcttttatataactggcagtgc---ag---atttgattacacc-agcatcactgcaaacacctgagtaatgtgttacattatgacattatcat-agatacagtgtcattaggaaataggaatttttttagctctgttgtaatcttaatgggaccagtgttgaaca----cgtggtcagtcattgatgaaatgaaaatgtcattatgtggtgcatgcctgTATTCTGAGAATTGCAAATTA----C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2129048  971 -   2157725 tataaacatagaaaaggtacaataaaatatggtataaaagataaaaaatggtatacctgtattgggcacttaccatgaatggagcttgcaggacttcaagttgctctgg----gtgagtgagtgagtgagtgctgagtgaatgt---------------------------gaaggcctagaccactactgaacactactttagactttgtaaaca--ct-acatttagcctacactaaaattacta-aaaaaca-ttt-tctctctttaacaataaattcattttagctaactacaacatttttacttcataaacttcttaatttccttag-ctttttgagtatt--taataaca-----cttaaaa-----------catacagctgtacaaaagtatgttctttgcctatatccttattctataaattcttt---------------ctttttttttttaacttgttaaac-ttttttgttaaaaatgaagacacaaacacacacatta---gcccaggcctacacaaggtcaggatcatcaatatcattgtcttccagctccacaccttgtcccactggaaggttttcaggggcaataacatgcatgaagctgttatctcctatgataataataacaatatcttcttctggtatacttgctgaaagacttgtgtgaggctgttttactgttaac-----tttt-----taaaaataagtaggagtat-aa-------aaatca----taaaaagtatagtacaggaaaaatataaaccagtaacgtatttgt---ttatcatcatcaagtattatatactgcacacaattgtatgtgttattcttttatataactggcagtgc---ag---atttgattacacc-agcatcactgcaaacacctgagtaatgtgttacattatgacattatcat-agatacagtgtcattaggaaataggaa-ttttttagctctgttataatctt-atgggaccagtgttgaaca----cctggtcagtcattgatgaaatgaaaatgtcattttgcggtgcatgcctgTATTCTGAGAATTGCAAAGTA-----
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28549643  972 -  71996105 tataaaaatagaaaaggtacaataaaatatggtataaaagataaaaaatggtatacctgtattgggcacttaccatgaatggggcttacaggacttcaagttgctctgg----gtgagtgagtgagtgagtgctgagtaaatgt---------------------------gaaggcctagaccactactgaacactactttagactttgtaaaca--ct-acatttagcctacactaaaattacta-aaaaaca-ttt-tctctctttaacaataaattcattttagctaactacaacatttttacttcataaacttcttaatttccttaa-ctttttgggtatt--taatcaca-----cttaaac-------acatcatacagctgtacaaaagtatgttctttgcctatatccttattccataaattat-----------------tattatttttttaactttttaaac-ttttttgttaaaaatgaagacacaaacacacacatta---gcccaggcccacccagggtcaggatcatcaatatcattgtcttccagctctacaccttgtcccactggaaggttttcaggcgcaataacatgcatggagctgtcatctcctatgataataataacattatcttcttctggtatacttgctgaaagacttgtgtgaggctgttttactgttaac-----tttt-----taaaaataagtaggtgtataaa-------aaatca----taaaaagtatagtataggaaaaatataaaccagtaacatatttgt---ttatcatcatcaagtat---gtactgcacacaattgtatgtgttattcttttatataactggcagtgc---ag---atttgattacacc-agcatcactgcaaacacctgagtaatgtgttacattatgacattatcat-agatacagtgtcattaggcaataggaa-ttttttagttctgttataatctt-atgggaccagtgttgaaca----cgtggtcagtcattgatgaaatgaaaatgtcattatgtggtgcatgcctgTATTCTGAGAATTGCAAATTA----C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2271788  973 +   2316924 tataaacatagaaaaggtataataaaatatggtataaaagataaaaaatggtatacctgtattgggcacttaccatcaatggagcttgcaggacttcaagttgctctgg----gtgagtgagtgagtgagtgctgagtgaatgt---------------------------gagggcctagaccactactgaacactactttagactttgtaaaca--ct-acatttagcctacactaaaattacta-aaaaaca-ttt-tctctctttaacaataaattcattttagctaactacaacatttttacttcataaacttcttaatttccttag-ctttttgagtatt--taataaca-----cttaaaa-----------catacagctgtacaaaagtatgttctttgcctatatccttattctataaattctttc--------------ttttttttttttaacttgttaaac-ttttttgttaaaaatgaagacacaaacacacacatta---gcccaggcctacacaaggtcaggatcatcaatatcattgtcttccagctccacaccttgtcccactggaaggttttcaggggcaataacatgcatgaagctgtcatctcctatgataataataacaatatcttcctctggtatacttgctgaaagacttgtgtgaggctgttttactgttaac-----tttt-----taaaaataagtaggagtat-aa-------aaatca----taaaaagtatagtacaggaaaaatataaaccagtaacgtatttgt---ttatcatcatcaagtattacatactgcacacaattgtatgtgtttttcttttatataactggcagtgc---ag---atttgattacacc-agcatcactgcaaacacctgagtaatgtgttacattatgacattatcat-agatacagtgtcattaggaaataggaa-ttttttagctctgttataatctt-atgggaccagtgttgaaca----cctggtcagtcattgatgaaatgaaaatgtcattatgcggtgcatgcctgTATTCTGAGAATTGCAAAGTA----G
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2183959 1027 -   3067355 tataaaaatagaaaa-gtataataaaaaatatggtaaaaaattaaaaatggtacgcttgtatagggcacttaccatgaatggagcttgcaggacttgaggttgctcagg----gtgagtcagtgagtgagaggtgagtgaatgtatacagaatgtatacagaaagtatacagaaggcctagaccactattgtatactactatagactttgtaaaca--ctgacatttagcctacactaaatttattacaaaagta-tttgtctctctttaataataaattcatcttagcttactataacatttttacttcataaactttttaatttctttaa-ctttttgattatt--taataaca-----ccttaag------tgcatcatatagctgtacaaaaatatgttctttg----tattcttattctataaattgttttctatttttaagcttttatcttgttttaactttttaaactttttttgttaaaaacgaaaacacgaacgcacacatta---gaccaagcctccacagggtcaggatcatcaatatcattgccttccagctccacaccttgtcccactggaaggttttcaggggcaataacatgtatggagctgtcatctcctatgat-ataataacaataccttcttatggaatgctttctgaagaacctgtgtgaggctgttttataattaccttttttttt-----taa----aagtaggactat-aaaaatgataaatga----taaagagtatagtatagcaagtacataaaccagtaatgtatttgt---ttatcatcattgagtattatgcactacacacaattgtatgtgctattcttttatatgactggcagtgctgtag---gtttgattacacc-agcatcactgcaaacacctgagtaatgcgttatgttatgacattattat-ggctacagtgtcactaggcaataggaa-ttttttacctccattataatctt-atgggaccactgttgaata----cgtggtcagtcattg-----atgaaaacgtcattatgtggtgcatgcctgTATTCTGAGAATTGCAATTTACTCAC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1730451  999 -   2232465 cttaagaaagaaaaaaatgttacaaaat--------aaaaataaaaaatagtacatctgcatagggtacttactatgaatggaactt-ctccactggaagttgctctag----gtgtgtcaatgagtgagtggtaagtgactgt---------------------------gaaagcctagggccttactgtacactactgtagactttataagccatct-gtatccaggtggcactaaatttac-a-aaaagaa-ttt-tctttttccaataataaattaatcttagcttattataacatttttactttataagctttaaaacttttaaaagcattttcaacctttgtaataacaatgaccttaaaacacaagtgccttgtatagctgtacaaaaatattttctttctttatatccttattttattttttttcttttttt---------tttttttttttttactttttaaac-ttttttgttgaaaactaagatgtaagcatgcacattattcacctaggcccatacagggtca-gatcatcaacatcgctgtcttccacttttacattttgtctcactggacggtcttcagggataataacaggcatggggctgtcagctcctatggc------aacaataccttcttccgg-ataccttctgaaaagccttccttgggctaatttacagttatt-----tgttttctataagtagaagaagaaaactata-------aaataatggttaaaaagtatagtatagtaaatgtataagccattaacttagtcatttattatcattatcaagtattacgtattgtatgt-gctatat-tgttatatgtgtgtatgactggcagcac---agtaagtttctttacactaagcaccaccacaaacacatgagtaatgacttgtcctaacactttaccacaagctagtacatcactaagcagtagaaa-tttgtcagctttaatatagtctt-aagggatcactttcatata----tgcggtcagtctttg-----accaaaatgtcattatgcagtacataactgTATTCTAAAATTTGCAATCTATCCAT
i otoGar3.GL873742         I 326 C 0
e dasNov3.JH570037            326466   12 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=2377498.000000
s hg38.chr6_GL000254v2_alt    407665 447 +   4827813 ATTATTAAATAATTTCACTATTAGATACCTGCTATCT--TTATTTAACATTGTTATGTTCACCTTTTATA-TTTTTT-CTACCAGGGACCATCCTTGAATTTTTTAAAAAGCAATTTTAGATTTGATCCTCCATGAATTCTTCCATAATTATAACTAATTATAACTACCTTTAATGACAATATTCACTCCA-GTATGTCTTCCGCAATTTTATTAAATTTATATTATTTGGGATTTTG------TTATTAACTTTATTAAGTAT-------AT-TTTGTCT-GTGAGTGGTGGTCA-C-CCAGAGCTCCTCC----------ATTT----CTCTGGACAT----------TTCCCTGAAGACATCAGACTAGGAATGACTAATCAATGTGATTTAATTTTGAAGTATATTTAAGCTCTGTAATTCTATTCTTAGATCTCATATTTTTTT-CTCATGTCATTCTTGT-ATTTTATTTCTTTTAGCTTTGGGATTTT
s panTro5.chr6              29382281 447 + 175400573 ATTATTAAATAATTTCACTATTAGATACCTGCTATCT--TTATTTAACATTGTTATGTTCACCTTTTATA-TTTTTT-CTACCAGGGACCATCCTTGAATTTTTTAAAAAGCAATTTTAGATTTGATCCTCCATGAATTCTTCCATAATTATAACTAATTATAACTACCTTTAATGACAATATTCACCCCA-GTATGTCTTCCACAATTTTATTAAATTTATATTATTTGGGATTTTG------TTATTAACTTTATTAAGTAT-------AG-TTTGTCT-GTGAGTGGTGGTCA-C-CCAGAGCTCCTCC----------ATTT----CTCTGGACAT----------TTCCCTGGAGACATCAGAGTAGGAATGACTAATCAATGTGATTTAATTTTGAAGTATATTTAAGCTCTGTAATTCTATTCTTAGATCTCATATTTTTTT-CTCATGTCATTCTTGT-ATTTTATTTCTTTTAGCTTTGGGATTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29627989 447 + 173848474 ATTATTAAATAATTTCACTATTAGATACCTGCTATCT--TTATTTAACATTGTTATGTTCACCTTTTATA-TTTTTT-CTACCAGGGACCATCCTTGAATTTTTTAAAAAGCAATTTTAGATTTGATCCTCAATGAATTCTTCCATAATTATAACTAATTATAACTACCTTTAATGACAATATTCACCCCA-GTATGTCTTCCACAATTTTATTAAATTTATATTATTTGGGATTTTG------TTATTAACTTTATTAAGTAT-------AG-TTTGTCT-GTGAGTGGTGGTCA-C-CCAGAGCTCCTCC----------ATTT----CTCTGGACAT----------TTCCCTGGAGACATCAGAGTAGGAATGACTAATCAATGTGATTTAATTTTGAAGTATATTTAAGCTCTGTAATTCTATTCTTAGATCTCATATTTTTTT-CTCATGTCATTCTTGT-ATTTTATTTCTTTTAGCTTTGGGATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5424799 452 +   6154872 ATTATTAAATAATTTCACTATTAGATACCTGCTATCT--TTATTTAACATTGTTATGTTCACCTTTTATA-TTTTTT-CTACCAGGGACCATCCTTCAATTTTTTAAAAAGCAATTTTAGATTTGATCCTCCATGAATTCCTCCATAATTATAACTAATTATAACTACCTTTAATGACAATATTCACTCCA-GTATGTCTTCTGCAATTTTATTAAATTTATATTATTTGGGATTTTG-TTATCTTATTAACTTTATTAAGTAT-------AG-TTTGCCT-GTGAGTGGTGGTCA-C-CCAGAGCTCCTCC----------ATTT----CTCTGGACAT----------TTCCCTGGAGACATCAGAGTAGGAATGACTAATCAATATGATTTAATTTTGAAGTATATTTAAGCTCTGTAATTCTATTCTTAGATCTCATATTTTTTT-CTCATGTCATTCTTGT-ATTTTATTTCTTTTAGCTTTGGGATTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29583606 455 + 172585720 ACTATTAAATAATTTCACTGTTAGATACCTACTATCTATTTCTTTAACATTGTTATGTTCACCTTTTATA-TTTTTT-CTACCAGGGACCATCCTTCAATTTTTAAAAGAGTAATTTTAGATTTGATCCTTCATGAATTCTTCCATAATTATAACTAATTATAACTACCTTTAATGACAATATTCACTCCA-ATTTGTCTTCTGCAATTTTATTAAATTCATATTATTTGGGATTTTG-TTATCTTATTAACTTTATTAAGTAT-------AG-TTTGTGT-GTGAGTGATGGTTA-C-CCAGAGCTCCTCC----------ATTT----CTCTGGACAT----------TTCCCTGGAGACATCAGAGTGGGAATGACTAATCAATGTGATTTAATTTTGAAATATATTTAAGCTCTGTAATTCTATTCTTAGAGCTCATATTTTTTTTCTCATGTCATTCTTGT-ATTTTATTTCTTTTAGCTTTGGGATTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29244843 455 - 170955103 ACTATTAAATAATTTCACTGTTAGATACCTACTATCTATTTCTTTAACATTGTTATGTTCACCTTTTATA-TTTTTT-CTACCAGGGACCATCCTTCAATTTTTAAAAGAGTAATTTTAGATTTGATCCTTCATGAATTCTTCCATAATTATAACTAATTATAACTACCTTTAATGACAATATTCACTCCA-GTTTGTCTTCTGCAATTTTATTAAATTCATATTATTTGGGATTTTG-TTATCTTATTAACTTTATTAAGTAT-------AG-TTTGTGT-GTGAGTGATGGTTA-C-CCAGAGCTCCTCC----------ATTT----CTCTGGACAT----------TTCCCTGGAGACATCAGAGTGGGAATGACTAATCAATGTGATTTAATTTTGAAATATATTTAAGCTCTGTAATTCTATTCTTAGAGCTCATATTTTTTTTCTCATGTCATTCTTGT-ATTTTATTTCTTTTAGCTTTGGGATTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2251527 455 -   2996164 ACTATTAAATAATTTCACTGTTAGATACCTACTATCTATTTCTTTAACATTGTTATGTTCACCTTTTATA-TTTTTT-CTACCAGGGACCATCCTTCAATTTTTAAAAGAGTAATTTTAGATTTGATCCTTCATGAATTCTTCCATAATTATAACTAATTATAACTACCTTTAATGACAATATTCACTCCA-GTTTGTCTTCTGCAATTTTATTAAATTCATATTATTTGGGATTTTG-TTATCTTATTAACTTTATTAAGTAT-------AG-TTTGTGT-GTGAGTGATGGTTA-C-CCAGAGCTCCTCC----------ATTT----CTCTGGACAT----------TTCCCTGGAGACATCAGAGTGGGAATGACTAATCAATGTGATTTAATTTTGAAATATATTTAAGCTCTGTAATTCTATTCTTAGAGCTCATATTTTTTTTCTCATGTCATTCTTGT-ATTTTATTTCTTTTAGCTTTGGGATTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2130019 436 -   2157725 -------------------GTTAGATACCTACTATCTATTTCTTTAACATTGTTATGTTCACCTTTTATA-TTTTTT-CCACCAGGGACCATCCTTCAATTTTTAAAAGAGTAATTTTAGATTTGATCCTTCATGAATTCTTCCATAATTATAACAAATTGTAACTACCTTTAATGACAATATTCACTCCA-GTATGTCTTCTGCAATTTTATTAAATTCATATTATTTGGGATTTTG-TTATCTTATTAACTTTATTTAGTAT-------AG-TTTGTGT-GTGAGTGATGGTTA-C-CCAGAGCTCCTCC----------ATTT----CTCTGGACAT----------TTCCCTGGAGACATCAGAGTGGGAATGACTAATCAATGTGATTTAATTTTGAAATATATTTAAGCTCTGTAATTCTATTCTTAGAGCTCATATTTTTTTTCTCATGTCATTCTTGT-ATTTTATTTCTTTTAGCTTTGGGATTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28550615 443 -  71996105 ACTGTTCAATAATTTCACTATTAGATACCTACTATCTATTTCTTTAACATTGTTATGTTCACCTTTTATA-TTTTCT-CTACCAGGGACCATCCTTCAATTTTTAAAAGAGTAATTTTAGATTTGATCTTCCATGAATTCTTCCAT----------AATTATAACTACCTTTAATGACAATATTCACTCCA-GTATGTCTTCTGCAATTTTATTAAATTTATATTATTTGGGATTTTG-TTATCTTATTAACTTTATTAAGTAT-------AG-TTTGTCT-GTGAGTGGTGGTTA-C-CCAGAGCTCCTCC----------ATTT----CTCTGGACAT----------TTCCCTGGAGACATCAGAGTGGGAATGACTAATCAACGTGATTTAATTTTGAAATATATTTAAGCTCTGTAATTCTATTCTTAGAGCTCATATTTTTTT--TCATGTAATTCTTGT-ATTTTATTTCTTTTAGCTTTGGGATTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2272761 435 +   2316924 A--------------------TAGATACCTACTATCTATTTCTTTAACATTGTTATGTTCACCTTTTATA-TTTTTT-CCACCAGGGACCATCCTTCAATTTTTAAAAGAGTAATTTTAGATTTGATCCTTCATGAATTCTTCCATAATTATAACAAATTATAACTACCTTTAATGACAATATTCACTCCA-GTATGACTTCTGCAATTTTATTAAATTCATATTATTTGGGATTTTG-TTGTCTTATTAACTTTATTAAGTAT-------AG-TTTGTGT-GTGAGTGATGGTTA-C-CCAGAGCTCCTCC----------ATTT----CTCTGGACAT----------TTCCCTGGAGACATCAGAGTGGGAATGACTAATCAATGTGATTTAATTTTGAAATATATTTAAGCTCTGTAATTCTTTTCTTAGAGCTCATATTTTTTTTCTCATGTCATTCTTGT-ATTTTATTTCTTTTAGCTTTGGGATTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2184986 449 -   3067355 ATTATTAAATAATCTCACTATTAGATACTTACTATCTA----TTTAACATTGTTATGTTCACTTTTTATATTTTTTT-CTACCAGGGACCATCTTTCAATTTTTTAAAGAGTAATTTTAGATTTGATCCTCTATGAATTCTTCCGTAATTATAACTAATTTTAACTAACTTTAATGATAATATTCACTCCA-GTATGCCTTCCAGGATTTCATTAAATTTGTATTATTTGGGATTTTG-TTATCTTATTAACTTTATTAAGTGT-------AG-TTTGTCT-GTGAATGGTGGTCA-C-CCTGAGCTCCTCC----------ATTT----CTCTGGACAT----------TTCCCTAGAGACATCAGAGTAGGAATGACTAATCAATGTGATTTAATTCTGAAGTATATTTAAGCTCTGTAATTCTAATCTTAGATCTCATATTTTT---CCCATGTCATTCTTGT-ATTTTATTTCTTTTAGCTTTGGGATTTT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1731450 462 -   2232465 GCTATTAAATAATTGCCCTATAAGACA----CTATCTATTCATTTAACATTGTTATATTCACCTTTTA-G-CTTTTT-CTATGATGGGTTATCCTTCAATTTTTAAAAGGGTAATCTTAGATTTAATCCTCCAGGAATTATTCTGTAATT------AATTACATCTAACTTTTATGTCAATAATCACTTTATGTATGTTTTTAACAATCTTATCAAATTTATATTATTTGGAATTGTGTTTACATTATTCAATTTCTTAAGTATGTAGCACAG-TTTAATTAGCAAATGATGATCA-CTCCATAGTCCCTTC----------ATTT----CTCTGGAAATCCCCAAAAGATTCTCTAAAGACATCATAGCAGGTGTGATTAGTCGATGTGATTTAATCTTAAAGAATATTTTAGTTATAAAATACTATCCTTAAATCTTAAATGTTT---CCCATGTAGTTGTCAT-ACTTCATAACTTTTAGTTGAGTGATTTT
i otoGar3.GL873742         C 0 I 294
s dasNov3.JH570037            326478 438 -    859332 ATTATTATATACCTGCACTATAAGAAGCATATTG-CCATTTATATAACACATTTGTGTTCGCCTTTCAAA-TTTTTTCCCACTGTGGACCATACTTCAATCTTTTAAAGATTAATTTAACATATGATTCTCTATATTTTCAGCCATAGCC------------AATTCTTTTTA----------TCCCTCAA-GTATGCTCTCATTAAATAAATTATATTTGTGTCATTTAGGAATTTGCTTCTATTATTCACCTTTTAAAGTGT-------GGTTTTGTTT-GAGAATGGTGACCATC-CCAGAGCCTCTTTCAATACTGAAATCTTTAACTTTGAATAT----------TGCCTTAGAGAACCCACAGCAGGAAGGCCTAAACAATGTGATTTACTCTTGAACTTTA-TTAAGGTCTGTAGTTCTATCCTTAGGTTTGTAACTTTT---GCCATATAGTTTTCATGATTTTACTTCT---------GAGATACC
i dasNov3.JH570037         I 12 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=521869.000000
s hg38.chr6_GL000254v2_alt    408112 102 +   4827813 ATCTGTCTTTTGGATCTTATACTTCAAGAAATGTTTCATCACTATTTTACTACATGGGGATTTACTTAATCACAAATGTTTAAAGCCACTTTATTAAAGTGC
s panTro5.chr6              29382728 102 + 175400573 ATCTGTCTTTTGGATCTTATACTTCAAGAAATGTTTCATCACTATTTTACTACATGGGGATTTACTTAATCACAAATGTTTAAAGCCACTTTATTAAAGTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29628436 102 + 173848474 ATCTGTCTTTTGGATCTTATACTTCAAGAAATGTTTCATCACTATTTTACTACATGGGGATTTACTTAATCACAAATGTTTAAAGCCACTTTATTAAAGTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5425251 102 +   6154872 ATCTGTCTTTTGGATCTTATACTTCAAGAAATGTTTCATCACTATTTTACTACATGGGGATCTACTTAACCACAAATGTTTAAAGCCACTTTATTAAAGTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29584061 102 + 172585720 ATCTGTCTTTTGGATCTTATACTTCAAGAAATTTTTCATCACTATTTTACTATATGGGGATCTACTTAACTACAAATGTTTAAAGCCACTTTATTAAGGTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29245298 102 - 170955103 ATCTGTCTTTTGGATCTTATACTTCAAGAAATTTTTCATCACTATTTTACTATATGGGGATCTACTTAACTACAAATGTTTAAAGCCACTTTATTAAGGTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2251982 102 -   2996164 ATCTGTCTTTTGGATCTTATACTTTAAGAAATTTTTCATCACTATTTTACTATATGGGGATCTACTTAACTACAAATGTTTAAAGCCACTTTATTAAGGTGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2130455 102 -   2157725 ATCTGTCTTTTGGATCTTATACTTCAAGAAATTTTTCATCACTATTTTACTATATGGGGATCTACTTAACTACAAATGTTTAAAGCCACTTTATTAAGGTGC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28551058 102 -  71996105 ATCTGTCTTTTGGATCTTATACTTCAAGAAATTTTTCATCACTATTTTACTATATGGGGATCTACTTAACTACAGATGTTTAAAGCCACTTTATTAAAATGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2273196 102 +   2316924 ATCTGTCTTTTGGATCTTATACTTCAAGAAATTTTTCATCACTATTTTACTATATGGGGATCTACTTAACTACAAATGTTTAAAGCCACTTTATTAAGGTGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2185435 102 -   3067355 ATCTGTCTTTTGGATCTTATACTTCAAGAAATTTTTCCTCAGTATTTTACTACATGGGGTTCTACTTACCCACAATTGTTTAAAGACACTTTATTAAAGTGC
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            326916 100 -    859332 --ATGATTTTTGAATCTCTCACTTGCAGTGATTTTCTATCTGTATTTCACTATACAGGGAAACATTCCTCCACAGTTGTTTATCTTCACTTTAGGAAAGTGC
i dasNov3.JH570037         C 0 I 36
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1731912 294 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=3149296.000000
s hg38.chr6_GL000254v2_alt    408214 689 +   4827813 CAGacccatgagttgagtaaattcctctcctcatggggtcccaagataaagcaggaatccttggaatgttagaaaatgacattctttacttaccacaggccagaaaccctgtatagggactgtgtaggcaaggtagaaggtcagttccccaaggggtttttattggctctataagtcaagtttcattccttaaaggaaaacacaccattccagtcaaagccttggt-aaaataaccaatttctccaactgtgtcctgctac----aaaaaaaaaaaaacagattcttattgcacttatgcaaataaatatattgccatcagttaagaatactcacaaatagtctccaaattctggagaaatcaggtagagagaaacaaatatggtcca--------ttttttttttcc--acagaagtatactttactcaattgctaaaggctgtaaatagctcaaagtaaaagttttcttaactctggaaaacaaaacaaagggttagcaacgttttaagcaaagtcaaaaagatta------gtttattcttttagcttagtttatgcagttaactcctgttctgtttgatattcatgaacattcctgttcttcacaagagttgcaaaagttgtttcctctattctaatgtcacaatttccaaagttatcagaaacctgcatttaagaacatccgttagagttgtatagctgactata
s panTro5.chr6              29382830 694 + 175400573 CAGacccatgagttgagtaaattcctctcctcatggggtcccaagataaagcaggaatccttggaatgttagaaaatgacattctttacttaccacaggccagaaaccctgtatagggactgtgtaggcaaggtagaaggtcagttccccaaggggtttttattggctctataagtcaagtttcattccttaaaggaaaacacaccattccagtcaaagccttggt-aaaataaccaatttctccaactgtgtcctgctacaaaaaaaaaaaaaaaaacagattcttattgcacttatgcaaataaatatattgccatcagttaagaatactcacaaatagtctccaaattctggagaaatcaggcagagagaaacaaatatggtcca-------tttttttttttcc--acagaagtatactttactcaattgctaaaagctgtaaatagctcaaagtaaaagttttcttaactctggaaaacaaaacaaaggattagcaacattttaagcaaagtcaaaaagatta------gtttattcttttagtttagtttatgcagttaactcctgttctgtttgatattcatgaacattcctgttcttcacgagagttgcaaaagttgtttcctctattctaatgtcacaatttccaaagttatcagaaacctgcatttaagaacatccgttagagttgtatagctgactata
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29628538 687 + 173848474 CAGacccatgagttgagtaaattcctctcctcatggggtcccaagataaagcaggaatccttggaatgttagaaaatgacattctttacttaccacaggccagaaaccctgtatagggactgtgtaggcaaggtagaaggtcagttccctaaggggtttttattggctctataagtcaagtttcattccttaaaggaaaacacaccattccagtcaaagccttggt-aaaataaccaatttctccaactgtgtcctgctac-----aaaaaaaaaaaacagattcttattgcacttatgcaaataaatatattgccatcagttaagaatactcacaaatagtctccaaattctggagaaatcaggcagagagaaacaaatatggtcca---------tttttttttcc--acagaagtatactttactcaattgctaaaagctgtaaatagctcaaagtaaaagttttcttaactctggaaaacaaaacaaaggattagcaacattttaagcaaagtcaaaaagatta------gtttattcttttagtttagtttatgcagttaactcctgttctgtttgatattcatgaacattcctgttcttcacgagagttgcaaaagttgtttcctctattctaatgtcacaatttccaaagttatcagaaacctgcatttaagaacatccgttagagttgtatagctgactata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5425353 685 +   6154872 CAGacccatgagttgagtaaattcctctcctcatggggtcccaagataaagcaggaatccttggaatgttagaaaatgacattctttacttaccacaggccagaaaccctgtatagggactgtgtaggcaaggtagaaggtcagttccccaaggggtttttattggctctataagtcaagtttcattccttaaaggaaaacacaccattccagtcaaagccttggt-aaaataaccaatttctccaactgtgtcctgctac--------aaaagaaaacagattcttattgcacttatgcaaataaatatattgccataagttaagaatactcacaaatagtctccaaattctggagaaatcaggtagagagaaacaattatggtcca--------ttttttttttcc--acagaagtatactttactcaattgctaaaagctgtaaatagctcaaagtaaaagttttcttaactctggaaaacaaaacaaaggattagcaacgttttaagcaaagtcaaaaagatta------gtttattcttttagtttagtttatgcagttaattcctgttctgtttgatattcatgaacattcctgttcttcacgagagttgcaaaagttgtttcctctattctaatgtcacaatttccaaagttatcagaaacctgcatttaagaacatgcgttagagttgtatagctgactata
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29584163 693 + 172585720 CAGatccatgagttgagtaaatctctctcctcacggggtcccaacataacgtagggctccttggactattagaaaatgacattctttacttaccacaggtcagaaaccctgtacagggactgtgtaggcaaggtagaaggtcagttccccaaggggtttttattggatctataagtcaagtttcattccttaaaggaaaacacaccattccagtcaaagccttggt-aaaaaaaacaatttctgcaattgtgtcctgttat--------aaaagaaaacagattcttattgcacttatgcaaataactatattgccataagttaagaatactcacaaatagtctccaaattctggagaaatcaggtagagagaaaaaaatatgctccatttttttttttttttttttc--ccagaagtatgctttactcaattgctaaaaactgtaaatagctcaaagtaaaagttttcttgactctggaaaacaaaacaaaggattagcaactttttaagcaaagtcaaaatgatta------gtttattcttttagtttagtttatgcagttaactcctggtctgtttggtattcatgaacattccagttcttcatgagagttgcaaaagttgtttcctatattctaatgtcacaatttccaaagttatcagaaacctgcatttaagaacatccattagagttgtatagctgactata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29245400 689 - 170955103 CAGacccatgagttgagtaaatctctctcctcacggggtcccaacataacgtagggctccttggactattagaaaatgacattctttacttaccacaggtcagaaaccctgtacagggactgtgtaggcaaggtagaaggtcagttccccaaggggtttttattggatctataagtcaagtttcattccttaaaggaaaacacaccattccagtcaaagccttggt-aaaaaaaacaatttctgcaattgtgtcctgttat--------aaaagaaaacagattcttattgcacttatgcaaataaatatattgccataagttaagaatactcacaaatagtctccaaattctggagaaatcaggtagagagaaaaaaatatgctcca----attttttttttttttt--ccagaagtatgccttactcaattgctaaaaactgtaaatagctcaaagtaaaagttttcttgactctggaaaacaaaacaaaggattagcaactttttaagcaaagtcaaaatgatta------gtttattcttttagtttagtttatgcagttaactcctggtctgtttggtattcatgaacattccagttcttcatgagagttgcaaaagttgtttcctatattctaatgtcacaatttccaaagttatcagaaacctgcatttaagaacatccattagagttgtatagctgactata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2252084 690 -   2996164 CAGacccatgagttgagtaaatctctctcctcacggggtcccaacataacgtagggctccttggactattagaaaatgacattctttacttaccacaggtcagaaaccctgtatagggactgtgtaggcaaggtagaaggtcagttccccaaggggtttttattggatctataagtcaagtttcattccttaaaggaaaacacaccattccagtcaaagccttggtaaaaaaaaacaatttctgcaattgtgtcctgttat--------aaaagaaaacagattcttattgcacttatgcaaataaatatattgccataagttaagaatactcacaaatagtctccaaattctggagaaatcaggtagagagaaaaaaatatgctcca----attttttttttttttc--ccagaagtatgctttactcaattgctaaaaactgtaaatagctcaaagtaaaagttttcttgactctggaaaacaaaacaaaggattagcaactttttaagcaaagtcaaaatgatta------gtttattcttttagtttagtttatgcagttacctcctggtctgtttggtattcatgaacattccagttcttcatgagagttgcaaaagttgtttcctatattctaatgtcacaatttccaaagttatcagaaacctgcatttaagaacatccattagagttgtatagctgactata
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2130557 691 -   2157725 CAGacccatgagttgagtaaatctctttcctcacggggtcccaacataacgtagggctccttggactattagaaaatgacattctttacttaccacaggtcagaaaccctgtacagggactgtgtaggcaaggtagaaggtcagttccccaaggggtttttattggatctataagtcaagtttcattccttaaaggaaaacacaccattccagtcaaagccttggt-aaaaaaaacaatttctgcaattgtgtcctgttat--------aaaagaaaacagattcttattgcacttatgcaaataaatatattgccataagttaagaatactcacaaatagtctccaaattctggagaaatcaggtagagagaaaaaaatatgctcca----attttttttttttttcttccagaagtatgctttactcaattgctaaaaactgtaaatagctcaaagtaaaagttttcttgactctggaagacaaaacaaagaattagcaactttttaagcaaagtcaaaatgatta------gattattcttttagtttagtttatgcagttaactcctggtctatttggtattcatgaacattccagctcttcatgagagttgcaaaagttgtttcctatattctaatgtcacaatttccaaagttatcagaaacctgcatttaagaacatccattagagttgtatagctgactata
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28551160 686 -  71996105 CAGacccatgagttgagtaaatccctctcctcacggggtcccaagataacgtagggctccttggactattagaaaatgacattgtttacttaccacaggtcagaaaccctatacagggactgtgtaggcaaggtagaaggtcagttccccaaggggtttttattggatctataagtcaagtttcattccttaaaggaaaacacaccagtccattcaaagccttggt-aaaataaacaatttctgcaattgtgtcctgttac--------aaaagaaaacagattcttattgcactcatgcaaataaatatattgccataagttaagaatactcacaaatagtctccgaattctggagaaatcaggtagagagaaacaaatatgctcca----attttttttttttt-----cagaagtatactttactcaattactaaaaactgtaagtagctcaaagtaaaagttttcttgactctggaaaacaaaacaaaggattagcaactttttaagcaaagtcaaaatgatta------gtttattcttttagtttagtttatgcagttaactcctgttccgtttggtattcatgaacattccagttcttcatgagagttgcaaaagttgtttcctctattctaatgtcacaatttcccaagttatcagaaacctgtatttaagaacatccattagagttgtatagctgactata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2273298 690 +   2316924 CAGacccatgagttgagtaaatctctctcctcacgggatcccaacataacgtagggctccttggactattagaaaatgacattctttacttaccacaggtcagaaaccctgtacagggactgtgtaggcaaggtagaagatcagttccccaaggggtttttattggatctataagtcaagtttcattccttaaaggaaaacacaccattccagtcaaagccttggt-aaaaaaaacaatttctacaattgtgtcctgttat--------gaaagaaaacagattcttattgcacttatgcaaataaatatattgccataagttaagaatactcacaaatagtctccagattctggagaaatcaggtagagagaaaaaaatatgctcca----atttttttttttttct-tccagaagtatgctttactcaattgctaaaaactgtaaatagctcaaagtaaaagttttcttgactctggaagacaaaacaaaggattagcaactttttaagcaaagtcaaaatgatta------gtttattcttttagtttagtttatgcagttaactcctggtctatttggtattcatgaacattccagttcttcatgagagttgcaaaagttgtttcctatattctaatgtcacaatttccaaagttatcagaaacctgcatttaagaacatccattagagttgtatagctgactata
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2185537 676 -   3067355 CAGatccatgagttgagtaaattcttctcctcttggggtcccaagataacttagggctcctggtcttgttagaaaatggcattctttacttaccacaggtcagaaaccctgtacagggactgcacaggcaaggtaggaggtcatttccac-----------------tgtgtaagtcaagttgaattccttaaaggaaaacacaccattccagtcaaagccttggt-taaataaccaatttctccaattgtgtcctgttac--------aaaagaaaacagattcttatttcacttatgcaaataactatattgccataagttaagaatactcccaaatagtctccaaattctggagaaatcagatagagaaaaacaaatatgctct-----ttttttttttttcctc--acagaagtatactttacttaattgctaaaagctgtaaatagctcaaaagaaaagtttccttgactctggaaaacaaaacaaagggtcagcaatgttttaagcaaagtcaaaaagattactttagttttatttgtttagtttagtttatgcagttaactcttgttctagttgatacccatgaacattccagttcttcatgagagttgcaaaagttgtttcctctattctaatgtcacaa-ttacaaagttatcagaaaccagcatttaggaacaaccattagagttgtatagctgactata
i colAng1.NW_012115566v1   C 0 I 196
e dasNov3.JH570037            327016  36 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1731912 294 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=375503.000000
s hg38.chr6_GL000254v2_alt    408903 103 +   4827813 aaccacc---ttttgaagaggattaaaacaagacaattgtctgtgtatgacaaaactcgttaccacagccactggcaaaaacgtgattgacaaagaaatttTGGTA
s panTro5.chr6              29383524 106 + 175400573 aaccacctttttttgaagaggattaaaacaagacaattgtctgtgtatgacaaaactcgttaccacagccactggcaaaaacatgattgacaaagaaattttgtta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29629225 106 + 173848474 aaccacctttttttgaagaggattaaaacaagacaattgtctgtgtatgacaaaactcgttaccacagccactggcaaaaacatgattgacaaagaaattttgtta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5426038 103 +   6154872 aaccacc---ttttgaagaggattaaaacaagacagttgtctgtgtatgacaaaacttgttaccacagccactggcaaaaacatgattgacaaagaaatttTGGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29584856 103 + 172585720 aaccacc---ttttgaagaggattaaaacaagataattgtctgtagattacaaaatgccttatgacagccacaggcaaaaacatgattgacaaagaaattttgcta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29246089 103 - 170955103 aaccacc---ttttgaagaggattaaaacaagataattgtctgtagatgacaaaatgccttatgacagccacaggcaaaaacatgattgacaaagaaattttgcta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2252774 103 -   2996164 aaccacc---ttttgaagaggattaaaacaagataattgtctgtagatgacaaaatgccttatgacagccacaggcaaaaacatgattgacaaagaaattttgcta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2131248 103 -   2157725 aaccacc---ttttgaagaggattaaaacaagataattgtctgtagatgacaaaacgccttacgacagccacaggcaaaaacatgattgacaaagaaattttgcta
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28551846 103 -  71996105 aaccacc---ttttgaagaggattaaaaaaacataattgtctgtggatgacaaaatgccttacaacagccacgggcaaaaacatgattgacaaagaaattttgcta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2273988 103 +   2316924 aaccacc---ttttgaagaggattaaaacaagataattgtctgtagatgacaaaacgccttacgacagccacaggcaaaaacatgattgacaaagaaattttgcta
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            327016  36 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1731912 294 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e colAng1.NW_012115566v1     2186213 196 -   3067355 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=4181075.000000
s hg38.chr6_GL000254v2_alt    409006 900 +   4827813 atgtataaaataattattcttgttccactttatacaaataatcaggccaagtgcaataaagtaaatcagtcttatcataatttgtcttcagtaaaaatgagaaactgaagtgagaaaaattatgtttcaagaagtatggtacacttgttattaaattctagtctcatgagttg-tttttaagtttgtttctacaatttaggctaaacctgcttattcctgtgaaccaaccagtgatcttagactgttactcagaagatacaagaggtttgggtaatgtaaaaatctggaccaatattctaatcatgggcacatattggaatcatctggcaaccctgtatcagcttggttttaacagttgctcagttcatgggaagcctttaaatttagtttacctggaataattttacttattttgctttgctgctgtggaatacattgcatttgtactctttgcatacggatgcagaatatgcttagtgaatgttttcttaaatggaacacttatcaatctttcagatagcacctcttgttgaaactcagagttatgaatggctctcatcatacca-atgctttttga-cgagctcctctctaccccaaatacgagagactctaattgttaggcag-ga--atatcattgctcctcttaagcctgaagaagctacagaaggagatggatctttgtccctctccaacccttaggattaagggttctcttgtaaaggggagggaggaaatgtcagaggcatgtgagccagagcagctccatcttgaatagcagctgggtaaaatgaggttgaaacctactggg-ctgcattcccagatggttaaggcattctaagtcacaggatgagacagaaagtcagtacaagatacaggtcataaagaccttgctgataaaacag
s panTro5.chr6              29383630 900 + 175400573 atgtataaaataattattcttgttccactttatacaaataatcatgccaagtgcaataaagtaaatcagtcttatcataatttgtcttcagtaaaaatgagaaactgaagtgagaaaaattatgtttcaagaagtatggtacacttgttattaaattctagtctcatgagttg-tttttaagtttgtttctacaatttaggctaaacctgcttattcctgtgaaccaaccagtgatcttagactgttactcagaagatacaagaggtttgggtaatgtaaaaatctggaccaatattctaatcatgggcacatattggaatcatctggcaaccctgtatcagcttggttttaacagttgctcagttcatgggaagcctttaaatttagtttacctggaataattttacttattttgctttgctgctgtggaatacattgcatttgtactctttgcatacagatgcagaatatgcttagtgaatgttttcttaaatggaacacttatcaatctttcagatagcacctcttgttgaaactcagagttatgaatggctctcatcatacca-gtgctttttga-cgagctcctctctaccccaaatacgagagactctaattgttaggcag-ga--atatcattgctcctcttaagcctgaagaagctacagaaggagatggatctttgtccctctccaacccttaggattaagggttctcttgtaaaggggagggaggaaatgtcagaggcatgtgagccagagcagctccatcttgaatagcagctgggtaaaatgaggttgaaacctactggg-ctgcattcccagatggttaaggcattctaagtcacaggatgagatagaaagtcagtacaagatacaggtcataaagaccttgctgataaaacag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29629331 900 + 173848474 atgtataaaataattattcttgttccactttatacaaataatcatgccaagtgcaataaagtaaatcagtcttatcataatttgtcttcagtaaaaatgagaaactgaagtgagaaaaattatgtttcaagaagtatggtacacttgttattaaattctagtctcatgagttg-tttttaagtttgtttctacaatttaggctaaacctgcttattcctgtgaaccaaccagtgatcttagactgttactcagaagatacaagaggtttgggtaatgtaaaaatctggaccaatattctaatcatgggcacatattggaatcatctggcaaccctgtatcagcttggttttaacagttgctcagttcatgggaagcctttaaatttagtttacctggaataattttacttattttgctttgctgctgtggaatacattgcatttgtactctttgcatacagatgcagaatatgcttagtgaatgttttcttaaatggaacacttatcaatctttcagatagcacctcttgttgaaactcagagttatgaatggctctcatcatacca-gtgctttttga-cgagctcctctctaccccaaatacgagagactctaattgttaggcag-ga--atatcattgctcctcttaagcctgaagaagctacagaaggagatggatctttgtccctctccaacccttaggattaagggttctcttgtaaaggggagggaggaaatgtcagaggcatgtgagccagagcagctccatcttgaatagcagctgggtaaaatgaggttgaaacctactggg-ctgcattcccagatggttaaggcattctaagtcacaggatgagatagaaagtcagtacaagatacaggtcataaagaccttgctgataaaacag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5426141 900 +   6154872 atgtataaaataattattcttgttgcactttatacaaataatcaggccaagtgcaataaagtaaatcaggcttatcataatttgtcttcagtaaaaatgagaaactgaagtgagaaaaattatgtttcaagaagtatggtacacttgttattaaattctagtctcatgagttg-tttttaagtttgtttctacaatttaggctaaacctgcttattcctgtgaaccaaccagtgatcttagactgttactcagaagatacaagaggtttgggtaatgtaaaaatctggaccaatattctaatcatgggcacatattggaatcatctggcaaccctatatcagcttggttttaacagttgctcagttcatgggaagcctttaaatttagtttacctggaataattttacttattttgctttgctgctgtggaatacattgcatttgtactctttgcatacggatgcagaatatgcttagtgaatgttttcttaaatggaacacttatcaatctttcagatagcacctcttgttgaaactcagagttatgaatggctctcatcatacca-atgctttttga-cgagctcctctctaccccaaatacgagagactctaattgttaggcag-ga--atatcattgctcctcttaagcctgaagaagctacagaaggagatggatctttgtccctctccaacccttaggattaagggttctcttgtaaaggggagggaggaaatgtcagaggcatgtgagccagagcagctccatcttgaatagcagctgggtaaaatgaggttgaaacctactggg-ctgcattcccagatggttaaggcattctaagtcacaggatgagatagaaagtcagtacaagatacaggtcataaggaccttgtggataaaacag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29584959 893 + 172585720 aagtataaaataattattcttgctgccctttatacaaataatcaggccaaatgtaataaagcaaattagccttatcataatttgtctttagtaaaaatgagaaactgaagagag-aaaattatgtttcaagaagtatggtacacttgttattaaattctagtctcatgagttg-tttttaagtttgtttctacaatttaggctaaacctgcttattcctatgaaccaaccagtgatcttagactgttactcagaagatacaagagggttgggtaacgtaagaatccggactaatattctaattatgggcacatattggaatcatctggcaaccctatatcagcatggttttaacagttactcagttcatgggaaacctttcaatttagtttacctggaataattttagttattttgctttgctgctgtggaatacatttcatttgtactctttgtatagggatgcagaatattcttagtgaatg------taaatggaacacttattaatctttcagatagcacctcttgttgaaactcagagttatgaatggctctcaccatacca-acgctttttga-tgagctcctctctaccccagatgtgagagactctaattgttaggcag-ga--atatcattgctcctcttaagcctgaagaagccaccaaagaagatggatctttgtccctctgcaacccttaggattaagggttctcttgtaaaggggagggagaaaatgtcagaaacatgtgagccagagcaactccatcttgaatagcagcttggtaaaatgaggctgaaacctatcggg-ctgcattcctagatggttaaggcattctaagtcacaggatcagatagaaggtcagtacaagatacaggtcataaagaccttgctgataaaacag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29246192 899 - 170955103 AAGTATaaaataattattcttgctgccctttatacaaataatcaggccaaatgtaataaagcaaattagccttatcataatttgtctttagtaaaaatgagaaactgaagagag-aaaattatgtttcaagaagtatggtacacttgttattaaattctagtctcatgagttg-tttttaagtttgtttctacaatttaggctaaacctgcttattcctatgaaccaaccagtgatcttagactgttactcagaagatacaagagggttgggtaacgtaagaatccggactaatattctaattatgggcacatattggaatcatctggcaaccctatatcagcatggttttaagagttactcagttcatgggaaacctttcaatttagtttatctggaataattttagttattttgctttgctgctgtggaatacattgcatttgtactctttgtatagggatgcagaatatgcttagtgaatgttttcttaaatggaacacttattaatctttcagatagcacctcttgttgaaactcagagttatgaatggctctcaccatacca-acgctttttga-tgagctcctctctaccccagatgtgagagactctaattgttaggcag-ga--atatcattgctcctcttaagcctgaagaagccaccgaagaagatggatctttgtccctctgcaacccttaggattaagggttctcttgtaaaggggagggagaaaatgtcagaaacatgtgagccagagcaactccatcttgaatagcagcttggtaaaatgaggctgaaacctattggg-ctgcattcctagatggttaaggcattctaagtcacaggatcagatagaaggtcagtacaagatacaggtcataaagaccttgctgataaaacag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2252877 899 -   2996164 aagtataaaataattattcttgctgccctttatacaaataatcaggccaaatgtaataaagcaaattagccttatcataatttgtctttagtaaaaatgagaaactgaagagag-aaaattatgtttcaagaagtatggtacacttgttattaaattctagtctcattagttg-tttttaagtttgtttctacaatttaggctaaacctgcttattcctatgaaccaaccagtgatcttagactgttactcagaagatacaagagggttgggtaacgtaagaatccggactaatattctaattatgggcacatattggaatcatctggcaaccctatatcagcatggttttaacagttactcagttcatgggaaacctttcaatttagtttacctggaataattttagttattttgctttgctgctgtggaatacattgcatttgtactctttgtatagggatgcagaatatgcttagtgaatgttttcttaaatggaacacttattaatctttcagatagcacctcttgttgaaactcagagttatgaatggctctcaccatacca-acgctttttga-tgagctcctctctaccccagatgtgagagactctaattgttaggcag-ga--atatcattgctcctcttaagcctgaagaagccaccgaagaagatggatctttgtccctctgtaacccttaggattaagggttctcttgtaaaggggagggagaaaatgtcagaaacatgtgagccagagcaactccatcttgaatagcagcttggtaaaatgaggctgaaacctattggg-ttgcattcctagatggttaaggcattctaagtcacaggatcagatagaaggtcagtacaagatacaggtcataaagaccttgctgataaaacag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2131351 894 -   2157725 atgtataaaataattattcttgctgccctttatacaaataatcgggccaaatgtaataatgcaaattagccttatcataatttgtctttggtaaaaatgagaaactgaagagag-aaaattatgtttcaagaagaatggtacacttgttattaaattctagtctcatgagttg-tttttaagtttgtttctacaatttaggctaaacttgcttattcctatgaaccaaccagtgatcttagactgttactcagaagatacaagagggttgggtaacgtaagaatccggactaatattctaattatgggcacatattggaatcatctggcaaccctatatcagcatgattttaacagttgctcagttcatgggaaacttttcaatttagtttacctggaataattttagttattttgctttgctgctgtggaatacattgcatttgtactctttgcatagggatgcagaatatgcttagtgaatgttttcttaaatggaacacttattaatctttcagatagcacctcttgttgaaactcagagttatgaatagctctcaccatactatacgctttttga-tgagctccttctta-cccaaat-tgagagactct-attgttaggcagcga--atatcatcgctcctcttaagcctgaagaagccaccaa--aagatagatctttgtccctctg-aacccttaggattaaggtttctcttgtaaaggggagggagaaaatgtcagaaacatgtgagccagagcaactccatcttgaatagcagcttggtaaaatgaggctgaaacctattgggcctgcattcccagatggttaaggcattctaagtc-caggatcagatagaaggtcagtacaaga-aaaggtcataaagaccttgctgataaaacag
i cerAty1.NW_012001495v1   C 0 I 72
s chlSab2.chr17             28551949 900 -  71996105 ACGTATaaaataattattcttgctgcactttatacaaataatcaggccaaatgtaataaagcaaatcagtcttatcataatttgtctttagtaaaaatgagaaactgaagagagaaaaattatgtttcaagaagtatggtacacttgttattaaattctagtctcatgagttg-tttttaagtttgtttctacaatttaggctaaacctgcttattcctgtgaaccaactagtgatcttagactgttactcagaagatacaagagggttgggtaatgtaagaatctggactaatattctaattatggacacatattggaatcatctggcaaccctatatgagcatggttttaacagttgctcagttcatgggaaacctttcaatttagtttacctggaataattttacttattttgctttgctgctgtggaatacattgcatttgtactctttgtatagggatgcagaatatgcttattgaatgttttcttaaatggaacgcttattaatctttcagatagcacctcttgttgaaactcagagttatgaatggctctcaccatacca-acgctttttga-tgagctcctctctaccctagatgtgagggactctaattgttaggcag-ga--atatcattgctcctctaaagcctaaagaagccatcgaagaagacggatctttgtccctctgcaacccttaggattaagggttctcttgtaaaggggagggagaaaatgtcagagacatgtgagccagagcaactccatcttgaatagcagcttggtaaaatgagtctgaaacctattggg-ctgcattcccagatggttaaggcattctaagtcacaagatgagatagaaggtcagtacaagatacaggtcacaaagaccttgctgataaaacag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2274091 898 +   2316924 atgtataaaataattattcttgctgccctttatacaaataatcaggccaaatgtaataaagcaaattagccttatcataatttgtctttagtaaaaatgagaaactgaagaaag-aaaattatgtttcaagaagaatggtacacttgttattaaattctagtctcatgagttg-tttttaagtttgtttctacaatttaggctaaacttgcttattcctatgaaccaaccagtgatcttaga-tgttactcagaagatacaagagggttgggtaacgtaagaatccggactaatattctaattatgggcacatattggaatcatctggcaaccctatatcagcatgattttaacagttgctcagttcatgggaaacctttcaatttagtttacctggaataattttagttattttgctttgctgctgtggaatacattgcatttgtactctttgcatagggatgcagaatatgcttagtgaatgttttcttaaatggaacacttattaatctttcagttagcacctcttgttgaaactcagagttatgaatagctctcaccatacta-acgctttttga-tgagctcctctctaccccaaatgtgagagactctaattgttaggcag-ga--atatcattgctcctcttaagcctgaagaagccaccgaagaagatggatctttgtccctctgcaacccttaggattaagggttctcttgtaaaggggagggagaaaatgtcagaaacatgtgagccagagcaactccatcttgaatagcagcttggtaaaatgaggctgaaacctattggg-ctgcattcccagatggttaaggcattctaagtcacaggatcagatagaaggtcagtacaagataaaggtcataaagaccttgctgataaaacag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2186409 904 -   3067355 atgtaaaaaataattattcttgctgcactttatacaaataatcaggccaagtgtaataaagcaaatcagtcttatcatgatttgtctttagtaaaaatgggaaactggagagagaaaaataatgtttcaagaactatggtgcacttgttattaaaatctagtctcatgagttgctttttaagttttttcctacaatttaggctaatcctgcttattcctgtgaaccaaccagttatctctgactgttacgcagaagacataagatggttgggtaatgtaaaaatctgaatcaatattctaatcttgggcacgtattggaatcatctggcaaccctatatcagcttggttccaacagttgctgagttcatggaaagccttcaaatttagtttacctcgaataattttacttattttgctttgctgctgtggaatacattgcatttgtactcttagtataggaatgcacaatatgcttattgaatgttttcttaaatagaacatttattagtctttcagatagcacctcttgttgaaactcagagttataaatggctctcatcaaacaa-acactttctgactgagctcctctctactccaaatatgagaggccctaattgttaggcag-gaatatatcattggtcctcttcatcctgaggaagctacagaagaagatggatctttgtccctctgcaacccttaggattaagggttctcttgtaaaagggaggagggaaatgtcagaggcatgtaatccagagcagcaccatcttgaatagaagctaagtaaaatgaggctgaaacctactggg-ctgcattcccagatggttaaggtactgtaagtcacaggatgagatagaaggtcagcacgagatacaggtcataaagcccttgctgataaaacag
i colAng1.NW_012115566v1   I 196 C 0
e dasNov3.JH570037            327016  36 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1731912 294 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=222219.000000
s hg38.chr6_GL000254v2_alt    409906 75 +   4827813 attactctaaagaagatggccaaaacccaccaaaaacaagatggtgatgagagtaaccactggtcatcctcgctg
s panTro5.chr6              29384530 75 + 175400573 attactctaaagaagatggccaaaacccaccaaaaacaagatggcgatgagagtaaccactggtcatcctcgctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29630231 75 + 173848474 attactctaaagaagatggccaaaacccaccaaaaacaagatggcgatgagagtaaccactggtcatcctcgctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5427041 75 +   6154872 attactctaaagaagatggccaaaacccaccaaaaacaagatggtgatgagagtaaccactggtcatcctcgctg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29585852 66 + 172585720 gttgctctaaagaag-----caaaacccaccaaaaacaagatggcaatgagagtaa---ccggtcat-ctcactg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29247091 66 - 170955103 gttgctctaaagaag-----caaaacccaccaaaaacaagatggcaatgagagtaa---ccggtcat-ctcactg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2253776 66 -   2996164 gttgctctaaagaag-----caaaacccaccaaaaacaagatggcaatgagagtaa---ccggtcat-ctcactg
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28552849 71 -  71996105 gttgctctaaagaagccagtcaaaatccaccaaaaacaagatgacgatgagagtaa---ctggttat-ctcactg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2274989 66 +   2316924 gttgctctaaagaag-----caaaacccaccaaaaacaagatggcaatgagagtaa---ccggtcat-ctcactg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2187313 75 -   3067355 gttactgtaaagaatccggccaaaacccaccaaaaccaagatggtgacgagagtgactgctggtcatcctcactg
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            327016 36 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1731912 294 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e cerAty1.NW_012001495v1     2132245 72 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=499621.000000
s hg38.chr6_GL000254v2_alt    409981 116 +   4827813 ctacactcccat-cagtgccatg-acaacgtcaggaagttgccctat-atggtagagtacatttgtttacaaatg--ccatggtaacatcaggaagctaccctgtatgttctagaaagggg
s panTro5.chr6              29384605 116 + 175400573 ctacactcccat-cagtgccatg-acaacgtcaggaagttgccctat-atggtagagtacatttgtttacaaatg--ccatggtaacatcaggaagctaccctgtatgttctagaaagggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29630306 116 + 173848474 ctacactcccat-cagtgccatg-acaacgtcaggaagttgccctat-atggtagagtacatttgtttacaaatg--ccatggtaacatcaggaagctaccctgtatgttctagaaagggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5427116 116 +   6154872 ctacactcccat-cagtgccatg-ataatgtcaggaagttgccccat-atggtagagtacatttgtttacaaatg--ccatggtaacatcaggaagctaccctgtatgttctagaaagggg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29585918 116 + 172585720 ctaaactcctat-cagagccatg-acaatgtcaggaagttaccctat-atggtagagcacatttgtttacaaatg--ccatggcaacatcaggaagttaccctgtatgttctagaaagggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29247157 116 - 170955103 ctaaactcctat-cagagccatg-acaatgtcaggaagttaccctat-atggtagagcacatttgtttacaaatg--ccatggcaacatcaggaagttaccctgtatgttctagaaagggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2253842 116 -   2996164 ctaaactcctat-cagagccatg-acaatgtcaggaagttaccctat-atggtagagcacatttgtttacaaatg--ccatggcaacatcaggaagttaccctgtatgttctagaaagggg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2132317 119 -   2157725 ctaaactcctatccagagccatgcacaatgctcggaagttaccctataattgtagc-cacatttgtttacaaattgcccatggccacatcaggaagttaccctg-gtatttcagaaagggg
i cerAty1.NW_012001495v1   I 72 C 0
s chlSab2.chr17             28552920 116 -  71996105 ctaaactcttat-cagagtcatg-acaacgtcaggaagttaccctat-acggtagagcacatttgtttacaaatg--ccatggcaacatcaggaagttaccctgtatgttctagaaagggg
i chlSab2.chr17            C 0 I 393
s manLeu1.NW_012104165v1     2275055 116 +   2316924 ctaaactcctat-cagagccatg-acaatgtcaggaagttaccctat-atggtagagcacatttgtttacaaatg--ccatggcaacatcaggaagttaccctgtatgttctagaaaggga
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2187388 113 -   3067355 ctacacttccac-cagtgccatg-acaa---caggaagttaccctat-atggtagggtacatttgcttacaaatg--ccatggcaacatcaggaagttaccctacctgttctaaaaagggg
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            327016  36 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1731912 294 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=678698.000000
s hg38.chr6_GL000254v2_alt    410097 157 +   4827813 aggc-atgaataatccaccccttgtttaacatatcatcaagaaataaccataaaaatgggcaaccagcagcccttgggg---ctgctctgtctgtggagtagccagccattcttttactcctttactttctgaataaacttgctttcacttAAAAA---------------------------AGATA
s panTro5.chr6              29384721 157 + 175400573 aggc-atgaataatccaccccttgtttaacatatcatcaagaaataaccataaaattgggcaaccagcagcccttgggg---ctgctctgtctatggagtagccagccattcttttactcctttactttctgaataaacttgctttcacttAAAAA---------------------------AAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29630422 157 + 173848474 aggc-atgaataatccaccccttgtttaacatatcatcaagaaataaccataaaattgggcaaccagcagcccttgggg---ctgctctgtctatggagtagccagccattcttttactcctttactttctgaataaacttgctttcactttaAAA---------------------------AAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5427232 156 +   6154872 aggc-atgaataatccaccccttgtttaacatatcatcaagaaataaccataaaaatgggcaaccagcagcccttgggg---ctgctctgtctatggagtagccagccattcttttattcctttactttctgaataaacttgctttcacttAAAAA---------------------------AAA-A
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29586034 153 + 172585720 aggc-atgaataatccaccccttgtttagcatatcatcaagaaataaccataaaaatgggcaaccagcagcccttgggg---ctgctctgtctatggagtaaccagccattcttttattcctttactttctgaataaacttgctttcacttAAAAA-------------------------------A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29247273 153 - 170955103 aggc-atgaataatccaccccttgtttagcatatcatcaagaaataaccataaaaatgggcaaccagcagcccttgggg---ctgctctgtctatggagtaaccagccattcttttattcctttactttctgaataaacttgctttcacttAAAAA-------------------------------A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2253958 153 -   2996164 aggc-atgaataatccaccccttgtgtagcatatcatcaagaaataaccataaaaatgggcaaccagcagcccttgggg---ctgctctgtctatggagtaaccagccattcttttattcctttactttctgaataaacttgctttcacttAAAAA-------------------------------A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2132436 152 -   2157725 aggcgatgaataatccacccct--gttaacatatcatcaagaaataaccataaaaatgggcaaccagcagccccttggggccctgctctgtctatggagtaggcagcgcatcttttatt-ctttac-ttctgaat-aacttgctttcacttAAAAA-------------------------------A
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28553429 153 -  71996105 aggc-atgaataatccaccccttgtttaacatatcatcaagaaataaccataaaaataggcaaccagcagcccttgggg---ctgctctgtctatggagtagccagccattcttttattcctttactttctgaataaacttgctttcacttaaaaA-------------------------------A
i chlSab2.chr17            I 393 C 0
s manLeu1.NW_012104165v1     2275171 153 +   2316924 aggc-atgaataatccaccccttgtttaacatatcatcaagaaataaccataaaaatgggcaaccagcagcccttgggg---ctgctctgtctatggagtaggcagccattcttttattcctttactttctgaataaacttgctttcacttAAAAA-------------------------------A
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2187501 180 -   3067355 aggc-atgaataatcctcccattgtttaacatatcgtcaagaaataaccataaaaatgggcaaccagcagcccttgggg---ctgctctgtctaatgagt----agccattcttttattcctttgttttctgaataaacttgctttcacataaataaataaataagtaaataaataaataaataagta
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            327016  36 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1731912 294 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=213166.000000
s hg38.chr6_GL000254v2_alt    410254 46 +   4827813 AATAAAGTACCAGACCCTATTCCTGTTGATGTCTCCTGTTTTATCT
s panTro5.chr6              29384878 46 + 175400573 AATAAAGTACCAGACCCTATTCCTGTTGATGTCTCCTGTTTTATCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29630579 46 + 173848474 AATAAAGTACCAGACCCTATTCCTGTTGATGTCTCCTGTTTTATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5427388 46 +   6154872 AATAAAGTACCAGACCCTATTCCTGTTGATGTCTCCTGTTTTATCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29586187 46 + 172585720 AATAAAGTACCAGACCCTATTCCTGTTGATGTCTCCTGTTTTATCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29247426 46 - 170955103 AATAAAGTACCAGACCCTATTCCTGTTGATGTCTCCTGTTTTATCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2254111 46 -   2996164 AATAAAGTACCAGACCCTATTCCTGTTGATGTCTCCTGTTTTATCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2132588 44 -   2157725 AATAAAGTACCAGACCCTATTCCTG-TGATGT-TCCTGTTTTATCT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28553582 46 -  71996105 AATAAAGTACCGTACGCTATTCCTGTTGATGTCTCCTGTTTTATCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2275324 46 +   2316924 AATAAAGTACCAGACCCTATTCCTGTTGATGTCTCCTGTTTTATCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2187681 44 -   3067355 aataaaCTACCAGAC-CGATTCCTGTTGATTTCTTC-ATTTTATCT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1732206 43 -   2232465 AATAAAATGGCGGA--CTATTTCTGTCAGCACCTTCT-TTGTATTC
i otoGar3.GL873742         I 294 C 0
e dasNov3.JH570037            327016 36 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1741932.000000
s hg38.chr6_GL000254v2_alt    410300 347 +   4827813 CCACTTCCA-TCTTCATTCTAGTGTAGCTTA----TAC-----------TTCATTTTTACCATACACAATATTTTCTTTATATGTACT-GCACT--TGTAGACTTTCTATATA----GTAAAAGATCATAAGAAGAAATAAAAGTTATTTTTATCTGACATTAGGA-ATCTGC--ATG-AAACACACAGACAAATCAATCCATCCAATTTTGAACATATATTCTAAAAATCCACCTGATTGAAAGAAGGCTTCATATTTGT-TTTGGGCATTTAATATTTCTCAGATATAGTGTATAAATCTCCCTCTCAGTCTCTCACTGAAACCAAATTTAAAATCAT---AATGAT-------TTTAA-ATGGGTT----TAATGTTTTT-AAATTTG
s panTro5.chr6              29384924 345 + 175400573 CCACT--CA-TCTTCATTCTAGTGTAGCTTA----TAC-----------TTCATTTTTACCATACACAATATTTTCTTTATATGTACT-GCACT--TGTAGACTTTCTATATA----GTAAAAGAGCATAAGAAGAAATAAAAGTTATTTTTATCTGACATTAGGA-ATCTGC--ATG-AAACACACAGACAAGTCAATCCATCCAATTTTGAACATATATTCTAAAAATCCACCTGACTGAAAGAAGGCTTCATATTTGT-TTTGGGCATTTAATATTTCTCAGATATAGTGTATAAATCTCCCTCTCAGTCTCTCACTGAAACCAAATTTAAAATCAT---AATGAT-------TTTAA-ATGGGTT----TAATGTTTTT-AAATTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29630625 345 + 173848474 CCACT--CA-TCTTCATTCTGGTGTAGCTTA----TAC-----------TTCATTTTTACCATACACAATATTTTCTTTATATGTACT-GCACT--TGTAGACTTTCTATATA----GTAAAAGAGCATAAGAAGAAATAAAAGTTATTTTTGTCTGACATTAGGA-ATCTGC--ATG-AAACACACAGACAAGTCAATCCATCCAATTTTGAACATATATTCTAAAAATCCACCTGACTGAAAGAAGGCTTCATATTTGT-TTTGGGCATTTAATATTTCTCAGATATAGTGTATAAATCTCCCTCTCAGTCTCTCACTGAAACCAAATTTAAAATCAT---AATGAT-------TTTAA-ATGGGTT----TAATGTTTTT-AAATTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5427434 347 +   6154872 CCACTTCCA-TCTTCATTCTAGTGTAGCTTA----TAC-----------TTCATTTTTACCATACACAATATTTTCTTTATATGTACT-GCACT--TGTAGACTTTCTATATA----GTAAAAGATCATAAGAAGAAATAAAAGTTATTTTTATCTGACATTAGGA-ATCTGC--ATG-AAACACACAGACAAGTCAATCCATCCAATTTTGAACATATATTCTAAAAATCCACCTGACTGAAAGAAGGCTTCATATTTGT-TTTGGGCATTTAATATTTCTCAGATATAGTGTATAAATCTCCCTCTCAGTCTCTCACTGAAACCAAATTTAAAATCAT---AATGAT-------TTTAA-ATGGGTT----TAATGTTTTT-AAATTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29586233 346 + 172585720 CCACTTCCA-TCTTCATTCTAGTGTAGTTTA----TAC-----------TTCATTTTTACCACACACAATATTTTCTTTATATGTACT-GCACT--TGTAGACTTTCTATATA----GTAAAAGATCATAAGAAGAAATAAAAGTTATTTTTATCTGACATTAGGA-ATCTGC--ATG-AAACACACAGACAAGTCAATCCATCCAATTTTGAACATATATTCTAAAAATTCACCTGACTGAAAGAAGGCTTCATATTTGT-TTCGGGCATTTAATATTTCTCAGATGTAGTGTATAAATCTCCCTCTCAGTCTCTCACTGAAACCAAATTTAAAATCAT---AATTAT-------TTTAA-ATGGGTT----TAATGTTTTT--AATTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29247472 342 - 170955103 CCACTTCCA-TCTTCATTCTAGTGTAGTTTA----TAC-----------TTCATTTTTACCACACACAATATTTTCTTTATATGTACT-GCACT--TGTAGACTTTCTATATA----GTAAAAGATCATAAGAAGAAATAAAAGTTATTTTTATCTGACATTAGGA-ATCTGC--ATG-AAACAC----ACAAGTCAATCCATCCAATTTTGAACATATATTCTAAAAATTCACCTGACTGAAAGAAGGCTTCATATTTGT-TTCGGGCATTTAATATTTCTCAGATGTAGTGTATAAATCTCCCTCTCAGTCTCTCACTGAAACCAAATTTAAAATCAT---AATTAT-------TTTAA-ATGGGTT----TAATGTTTTT--AATTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2254157 346 -   2996164 CCACTTCCA-TCTTCATTCTAGTGTAGTTTA----TAC-----------TTCATTTTTACCACACACAATATTTTCTTTATATGTACT-GCACT--TGTAGACTTTCTATATA----GTAAAAGATCATAAGAAGAAATAAAAGTTATTTTTATCTGACATTAGGA-ATCTGC--ATG-AAACACACAGACAAGTCAATCCATCCAATTTTGAACATATATTCTAAAAATTCACCTGACTGAAAGAAGGCTTCATATTTGT-TTCGGGCATTTAATATTTCTCAGATGTAGTGTATAAATCTCCCTCTCAGTCTCTCACTGAAACCAAATTTAAAATCAT---AATTAT-------TTTAA-ATGGGTT----TAATGTTTTT--AATTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2132632 346 -   2157725 CCACTTCCA-TC-TCATTCTAGTGTAGTTTA----TAC-----------TTCATTTTTACCACA-ACAATATTTTCTTTATATGCACTGGCACTGCTGTAGA--TTTTATATA----GTAAAAG-TCATAAGAACGAAATAAAGTTGATTTTATCTGACATTA-GA-ACATGCCGATGTAAACACACAGACAAGTCAATCCATCCAATTTAGAACATATATTCTAAAAATCCACCTGACTGAAAGAAGGCTTCATATTTGT-TTCGGGCATTTAATATTTCTCAGATGTAGTGTATAAATCTCCCTCTCAGTCTCTCACTGAAACCAAATTTAAAATCAT---AATTAT-------TTTAA-ATGGGTT----TAATGTTTTT--AATTTG
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28553628 348 -  71996105 CCACTTCCATTCTTCATTCTAGTGCAGCTTA----TAC-----------TTCATTTTTACCACACACAATATTTTCTTTATATGTACT-GCACT--TGTAGACTTTCTATATA----GTAAAAGATCATAAGAAGAAAAAAAAGTTATTTTTATCTGACATTAGGA-ATCTGC--ATG-AAACACACAGACAAGTCAATCCATCCAATTTTGAACATATATTCTAAAAATCCACCTGACTGAAAGAAGCCTTCGTATTTGT-TTTGGGCATTTAATATTTCCCAGATGTAGTGTATAAATCTCCCTCTCAGTCTCTCACTGAAACCAAATTTAAAATCAT---AATTAT-------TTTAA-ATGGGTT----TAATGTTTTT-AAATTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2275370 346 +   2316924 CCACTTCCA-TCTTCATTCTAGTGTAGTTTA----TAC-----------TTCATTTTTACCACACACAATATTTTCTTTATATGTACT-TCACT--TGTAGACTTTCTATATA----GTAAAAGATCATAAGAAGAAATAAAAGTTATTTTTATCTGACATTAGGA-ATCTGC--ATG-AAACACACAGACAAGTCAATCCATCCAATTTTGAACATATATTCTAAAAATTCACCTGACTGAAAGAAGGCTTCATATTTGT-TTCGGGCATTTAATATTTCTCAGATGTAGTGTATAAATCTCCCTCTCAGTCTCTCACTGAAACCAAATTTAAAATCAT---AATTAT-------TTTAA-ATGGGTT----TAATGTTTTT--AATTTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2187725 351 -   3067355 CCATTTCCA-TTTTCATTCTAGTGTAGCTTA----TAC-----------TTCATTATTACCACACACAATATTTTCTGTATATGTAGA-ACACT--TGTAAACTTTCTATATA----GTAAAAGATTATCAGAAGAAATAACAGTTA-TTTTATCTGACATTAGAA-ATGTGG--ATG-AAACACACAAACAAGTCAATCCATCCAGCCATGACCATATATTTTAAAAATCCACATGACTGAATGAAGGCTTCATATTTGT-TTCAGGCATTTAATATTTCTCAGATACAGTGTATCAAT----CTCTCAGTCTCTCACTGAAACCAAATTTAAAATCATTTAAATTTTTAAGTCATTTAA-AT-TTTT----AAATGATTTT-AAGTTTG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1732249 321 -   2232465 CCACTCACA-TATTCATTCTAATGTTTCTTATTCGTAC-----------TTTGTTTTCACTACACACCGTACATTGTTTATATTTACA-GTGCT--TTTTAGCTTTCTACATA----GTAAAAGATCACAAGA---AATAAAAGTTGTTTTTATCTGACACCAAAACATTCAG--ATG-ACACATGTGGACAACTCCAGCCATCAAATTGTGGCCATATTTTTAAAAAGTTCACATGACTGAATGAAGGCTTCATAGTTAT-TTCAGGTATTTAACATCTATGAAATATAATGTTTATGG--------------------------AAATTTA----------AATGAT-------TTTAAGATTGGTTTAAGTAAtgttactgaaattt-
i otoGar3.GL873742         C 0 I 669
s dasNov3.JH570037            327052 310 -    859332 CTGCTCACG-TTTTTATTCTAATGCATCTTA----TGCATACAACTTTTTTTGTGTGTGCCATATA-GTTATTTTATTTATGTTTACC-ATGTT--ATTTAGTTTTATATATACATGGCAAAAGATCACATGAAGAAATAAAAGTTATGCCTATCTGACCCTAAAGTATGAGG--ATG-GAACACATGGACAAGTCGATCCATCACAATTTGACCATACTTTAAAAAAGCTAACATGGTGGAATGAAGCCTTTATACTTCTATTCAGGTATTTCACATTGGCCAGGTATAGAATTTAAAG--------------------------AAATTT-----------TATGAT-------TTCAA----GGTT----G-----------------
i dasNov3.JH570037         I 36 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=4780114.000000
s hg38.chr6_GL000254v2_alt    410647 841 +   4827813 GTTTCAGTGAGAGATTGAGAGATAGATTAATT----ACAAAGAGAAAT-CTAGTTGCTTCTTAGAACCACTGAGCAGCTGTTTCCAAAGGTTAGAAAAGGCTCCCTGAAATGAAATGCTCTCTGCCTTTCAGATGTATATTAGGCAGTGGCAGTATGATCTACACATATTTCAATTT-CCCTAAGAATGCATGGACTTGAAA---ACGTGCCTTTTTACTCACC---TTTTGATAAATATCTTTCAATAAAAAGGAATTATGAAGG-AATACACTTGAATTTTTCAAACGTTCAG---AGGATGGATAAACTGTAGTATACA--TGAGTATTTAAGAATTAGCTTCACAACT--TAGGTTTTCAATTGTTA-CAGGGTTCCAAAGAGAAGAAAACATGGGTTAGGAAGA----------------------------CAATAGTAGAAAATA------------TCAGAATGCTTTGTGGATGTGTTATTTGTAAGCTCTTCCTGAGACCTCTTGGGCATTGTTTTCCAACAGGCCATTAATCCTTATCCCAGATGAGGAGTTAGCAGAGAAAATTCCTTGGGACAGAGATCTCTATGGAAATGCTACTTATGTACAATTAGTTTCCTACTGAACTGAGGTTGGTAGGAAGTCTCTTCTGTTGTCAGATGTGTTTTAAAATACATTTACTCAATTTCCCAAAACAG-------TAGACACTAATTTTAAATGA------GATGCAATTAGAGATGAGCTAGTTTGAATAAATGATTCTGGGGAACTTAAATGAGAATTCCCTGAATACCTTACCTCATTAACTTCTAGACTACCTCACATAAAATTTAATCATTTCTAGTTGTAAGAATAAAGGGGCACAAAAATGAGTTGAAAAGGAAGAAAGATAAT-----AAAAAG
s panTro5.chr6              29385269 844 + 175400573 GTTTCAGTGAGAGACTGAGAGATAGATTAATT----ACAAAGAGAAAT-CTAGTTGCTTCTTAGAACCACTGAGCAGCTGTTTCCAAAGGTTAGAAAAGGCTCCCTGAAATGAAATGCTCTCTGCCTTTCAGATGTATATTAGGCAGTGGCAGTATGATCTACACATATTTCAATTT-CCCTAAGAATGCATGGACTTGAAA---ACGTGCCTTTTTACTCACCTTATTTTGATAAATATCTTTCAATAAAAAGGAATTATGAAGG-AATACACTTGAATTTTTCAAACGTTCAG---AGGATGGATAAACTGTAGTATACG--TGAGTATTTAAGAATTAGCTTCACAACT--TAGGTTTTCAATTGTTA-CAGGGTTCCAAAGAGAAGAAAACATGGGTTAGGAAGA----------------------------CAATAGTAGAAAATA------------TCAGAATGCTTTGTGGATGTGTTATTTGTAAGCTCTTCCTGAGACCTCTTGGGCATTGTTTTCCAACAGGCCATTAATCCTTATCCCAGATGAGGAGTTAGCAGAGAAAATTCCTTGGGACAGAGATCTCTATGGAAATGCTCCTTATGTACAATTAGTTTCCTACTGAACTGAGGTTGGTAGGAAGTTTCTTCTGTTGTCAGATGTGTTTTAAAATACATTTACTCAATTTCCCAAAACAG-------TAGACACTAATTTTAAATGA------GATGCAATTAGAGATGAGCTAGTTTGAATAAATGATTCTGGGGAACTTAAATGAGAATTCCCTGAATACCTTACCTCATTAGCTTCTAGACTACCTCACATAAAATTTAATCATTTCTAGTTGTAAGAATAAAGGGGCACAAAAATGAGTTGAAAAGGAAGAAAAATAAT-----AAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29630970 844 + 173848474 GTTTCAGTGAGAGACTGAGAGATAGATTAATT----ACAAAGAGAAAT-CTAGTTGCTTCTTAGAACCACTGAGCAGCTGTTTCCAAAGGTTAGAAAAGGCTCCCTGAAATGAAATGCTCTCTGCCTTTCAGATGTATATTAGGCAGTGGCAGTATGATCTACACATATTTCAATTT-CCCTAAGAATGCATGGACTTGAAA---ACGTGCCTTTTTACTCACCTTATTTTGATAAATATCTTTCAATAAAAAGGAATTATGAAGG-AATACACTTGAATTTTTCAAACGTTCAG---AGGATGGATAAACTGTAGTATACG--TGAGTATTTAAGAATTAGCTTCACAACT--TAGGTTTTCAATTGTTA-CAGGGTTCCAAAGAGAAGAAAACATGGGTTAGGAAGA----------------------------CAATAGTAGAAAATA------------TCAGAATGCTTTGTGGATGTGTTATTTGTAAGCTCTTCCTGAGACCTCTTGGGCATTGTTTTCCAACAGGCCATTAATCCTTATCCCAGATGAGGAGTTAGCAGAGAAAATTCCTTGGGACAGAGATCTCTATGGAAATGCTCCTTATGTACAATTAGTTTCCTACTGAACTGAGGTTGGTAGGAAGTCTCTTCTGTTGTCAGATGTGTTTTAAAATACATTTACTCAATTTCCCAAAACAG-------TAGACACTAATTTTAAATGA------GATGCAATTAGAGATGAGCTAGTTTGAATAAATGATTCTGGGGAACTTAAATGAGAATTCCCTGAATACCTTACCTCATTAGCTTCTAGACTACCTCACATAAAATTTAATCATTTCTAGTTGTAAGAATAAAGGGGCACAAAAATGAGTTGAAAAGGAAGAAAAATAAT-----AAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5427781 846 +   6154872 GTTTCAGTGAGAGACTGAGAGATAGATTAATT----ACAAAGAGAAAT-CTAG-TGCTTCTTAGAACCACTGAGCAGCTGTTTCCAAAGGTTAGAAAAGGCTCCGTGAAATGAAATGCTCTCTGCCTTTCAGATGTATATTAGGCAGTGGCAGTATGATCTACACATATTTCAATTT-CCCTAAGAAGGCATGGACTTGAAAAACATGTGCCTTTTTACTCACCTTATTTTGATAAATATCTTTCAATAAAAAGGAATTATGAAGG-AATACACTTGAATTTTTCAAACGTTCAG---AGGATGGATAAACTGTAGTATACA--TGAGTATTTAAGAATTAGCTTCACAACT--TAGGTTTTCAATTGTTA-CAGGGTTCCAAAGAGAAGAAAACATGGGTTAGGAAGA----------------------------CAATAGTAGAAAATA------------TCAGAATGCTTTGTGGATGTGTTATTTGTAAGCTCTTCCTGAGACCTCTTGGGCATTGTTTTCCAACAGGCCATTAATCCTTATCCCAGATGAGGAGTTAGCAGAGAAAATTCCTTGGGACAGAGATCTCTATGGAAATGCTCCTTATGTACAATTAGTTTCCTACTGAACTGAGGTTGGTAGGAAGTCTCTTCTGTTGTCAGATGTGTTTTAAAATACATTTACTCAATTTCCCAAAACAG-------TAGACACTAATTTTAAATGA------GATGCAATTAGAGATGAGCTAGTTTGAATAAATGATTCTGGGGAACTTAAATGAGAATTCCCTGAATACCTTACCTCATCAGCTTCTAGACTACCTCACATAAAATTTAATCATTTCTAGTTGTAAGAATAAAGGGGCACAAAAATGAGTTGAAAAGGAAGAAAAATAAT-----AAAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29586579 845 + 172585720 GTTTCAGTGAGAGACTAAGAGGTAGATTAATT----ACAAAGAGAAAT-CTAGTTGCTTCTTAGAACCACTGAGCAGATGTTT-CAAAGGTTAGAAAAGGCTCCCTGAAATGAAATACTCTCTGCCCTTCAGATGTATATTAGGCAGTGGCAGTATGATCTACACATATTTCAATTT--CCTAAGAATGCATAGACTTGAAAAACATGTGCCTTTTTACTCACCTTATTTTGATAAATATCCTTTAATAAAAAGGAATTATGAAGG-AATACACTTGAATTTTTCAAACATTCAG---AGGATGGAGAAACTGTAGTATACA--TGAGTATTTAAGAATTAGCTTCACAACT--TAGGTTTTCAATTGCTA-CCACGTTCCAAAGAGAAGAAAGCATGGGTTAGGAAGA----------------------------CAATAGTTGAAAATA------------TCAGAATGCTTTGTGGGTGTGTTATTTTTAAGCTCTTCCTGAGACCTCTTGGGCATTGTTTTCCAACAGGCCATTAATCCTTATCCCAGATGAGGAGTTAGCAGAGAAAATTCCTTGGGACAGAGATCTCTATGGAAATGCTTCTTATGCACAATTAGTTACCTACTGAACTGAGGTTGGTAGGAAGTCTCTTCTGTTGTCAGATGTATTTTAAAATACACTTACTCAATTTCTCAAAATAG-------TAGACACCAATTTTAAATGA------GATGCAATTAGAAATGAGCTAGTTTGAATAAATGGTTCTGAAGAACTTATATGAGAGTTCCCTGAATATCTTACCTCGTTAGCTCTTAAACTCTCGCACATAAAATTTAATCATTTCTAGTTGTAAGAATAAAGGAGCACAAAAATGAGTTGAAGAGGAAGAAAAATAAT-----AAAAAG
i rheMac8.chr4             C 0 I 2
s macFas5.chr4              29247814 845 - 170955103 GTTTCAGTGAGAGACTGAGAGATAGATTAATT----ACAAAGAGAAAT-CTAGTTGCTTCTTAGAACCACTGAGCAGATGTTT-CAAAGGTTAGAAAAGGCTCCCTGAAATGAAATACTCTCTGCCCTTCAGATGTATATTAGGCAGTGGCAGTATGATCTACACATATTTCAATTT--CCTAAGAATGCATAGACTTGAAAAACATGTGCCTTTTTACTCACCTTATTTTGATAAATATCCTTTAATAAAAAGGAATTATGAAGG-AATACACTTGAATTTTTCAAACATTCAG---AGGATGGAGAAACTGTAGTATACA--TGAGTATTTAAGAATTAGCTTCACAACT--TAGGTTTTCAATTGCTA-CCATGTTCCAAAGAGAAGAAAGCATGGGTTAGGAAGA----------------------------CAATAGTTGAAAATA------------TCAGAATGCTTTGTGGGTGTGTTATTTTTAAGCTCTTCCTGAGACCTCTTGGGCATTGTTTTCCAACAGGCCATTAATCCTTATCCCAGATGAGGAGTTAGCAGAGAAAATTCCTTGGGACAGAGATCTCTATGGAAATGCTACTTATGTACAATTAGTTACCTACTGAACTGAGGTTGGTAGGAAGTCTCTTCTGTTGTCAGATGTATTTTAAAATACGGTTACTCAATTTCTCAAAACAG-------TAGACACCAATTTTAAATGA------GATGCAATTAGAAATGAGCTAGTTTGAATAAATGATTCTGAAGAACTTATATGAGAGTTCCCTGAATATCTTACCTCGTTAGCTCTTAAACTCTCGCACATAAAATTTAATCATTTCTAGTTGTAAGAATAAAGGAGCACAAAAATGAGTTGAAGAGGAAGAAAAATAAT-----AAAAAG
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1     2254503 845 -   2996164 GTTTCAGTGAGAGACTGAGAGATAGATTAATT----ACAAAGAGAAAT-CTAGTTGCTTCTTAGAACCACTGAGCAGATGTTT-CAAAGGTTAGAAAAGGCTCCCTGAAATGAAATACTCTCTGCCCTTCAGATGTATATTAGGCAGTGGCAGTATGATCTACACATATTTCAATTT--CCTAAGAATGCATAGACTTGAAAAACATGTGCCTTTTTACTCACCTTATTTTGATAAATATCCTTTAATAAAAAGGAATTATGAAGG-AATACACTTGAATTTTTCAAACATTCAG---AGGATGGAGAAACTGTAGTATACA--TGAGTATTTAAGAATTAGCTTCACAACT--TAGGTTTTCAATTGCTA-CCATGTTCCAAAGAGAAGAAAGCATGGGTTAGGAAGA----------------------------CAATAGTTGAAAATA------------TCAGAATGCTTTGTGGGTGTGTTATTTTTAAGCTCTTCCTGAGACCTCTTGGGCATTGTTTTCCAACAGGCCATTAATCCTTATCCCAGATGAGGAGTTAGCAGAGAAAATTCCTTGGGACAGAGATCTCTATGGAAATGCTACTTATGTAGAATTAGTTTCCTAGTGAACTGAAGTTGGTAGGAAGTCTCTTCTGTTGTCAGATGTATTTTAAAATACACTTACTCAATTTCTCAAAATAG-------TAGACACCAATTTTAAATGA------GATGCAATTAGAAATGAGCTAGTTTGAATAAATGATTCTGAAGAACTTATATGAGAGTTCCCTGAATATCTTACCTCATTAGCTCTTAAACTCTCGCACATAAAATTTAATCATTTCTAGTTGTAAGAATAAAGGAGCACAAAAATGAGTTGAAGAGGAAGAAAAATAAT-----AAAAAG
i macNem1.NW_012011356v1   C 0 I 2
s cerAty1.NW_012001495v1     2132978 833 -   2157725 GTTTCAGTGAGAGACTGAGAGATAGATTAATT----ACAAAGAGAAAT-CTAGTTGCTTCTTAGAACCACTGAGCAGATGTTT-CAAAGGTTAGAAAAGGCTGCCTGAAATGAAATACTCTCTGCCCTTCAGATGTATATTAGGCAGTGGCAGTATGATCTACACATATTTCAATTT--CCTAAGAATGCATAGACTTGAAAAACATGTGCCTTTTTACTCACCTTATTTTGATAAATATCCTTTAATAAAAAGGAATTATGAAGG-AATACACTTGAATTTTTCAAACATTCAG---AGGATGGAGAAACTGTAGTATACA--TGAGTATTTAAGAATTAGCTTCACAACT--TAGGTTTTCAATTGCTA-CCATGTTCCAAAGAGAAGAAAGCATGGGTTAGGAAGA----------------------------CAATAGTTGAAAATA------------TCAGAATGCTTTGTGGGTGTGTTATTTTTAAGCTCTTCCTGAGACCTCTTAGGCATTGTTTTCCAACAGGCCATTAATCCTTTTCCCAGATGAGGAGTTAGCAGAGAAAATTCCTTGGGACAGAGATCTCTATGGAAATGCTACTTATGTACAATTAGTTTCCTAGTGAACTGAAGTTGGTAGGAAGTCTCTTCTGTTGTCAGATGTATTTTAAAATACACTTACTCAATTTCTCAAAATAG-------TAGACACCAATTTTAAATGA------GATGCAATTAGAAATGAGCTAGTTTGAAT------------AGAACTTATATGAGAGTTCCCTGAATATCTTACCTCATTAGCTCTTAAACTCTCGCACATAAAATTTAATCATTTCTAGTTGTGAGAATAAAGGAGCACAAAAATGAGTTGAAGAGGAAGAAAAATAAA-----AAAAAG
i cerAty1.NW_012001495v1   C 0 I 5841
s chlSab2.chr17             28553976 846 -  71996105 GTTTCAGTGAGAGACTGAGAGATAGATTAATT----ACAAAGAGAAAT-CTAGTTGCTTCTTAGAATCACTGAGCAGATGTTT-CAAAGGTTAGAAAAGGCTCCCTAAAATGAAATGCTCTCTGCCTTTCAGATGTATATTAGGCAGTGGCAGTATGATCTACACATATTTCAATTT-CCCTAAGAATGTATAGACTTGAAAAACATGTGCCTTTTTACTCACCTTATTTTGATAAATATCCTTCAATAAAAAGGAATTATGAAGG-AATACACTTGAATTTTTCAAATGTTCAG---AGGATGGAGAAAATGTAGTATACA--TGAGTATTTAAGAATTAGCTTCACAACT--TAGGTTTTCAATTGCCA-CCAGGTTCCAAAGAGAAGAAAGCATGGGTTAGGAAGA----------------------------CAATAATTGAAAATT------------TCAGAATGCTTTGTGGGTGTGTTATTTTTAAGCTCTTCCTGAGACCTCTTGGGCATTGTTTTCCAACAGGCCATTAATCCTTATCCCAGATGAGGAGTGAGCAGAGAAAATTCCTTGGGACAAAGATCTCTATGGAAATGCTACTTATGTACAATTAGTTTCCTAGTGAACTGAAGTTGGTAGGAAGTCTCTTCTGTTGTCAGATGTATTTTAAAATACACATACTCAATTTCTCAAAATAG-------TAGACACCAACTTTAAATGA------GATGCAATTAGAAATGAGCTAGTTTGAATAAATGATTCTAAAGAACTTATATGAGAGTTCCCTGAATATCTTACCTCATTAGCTCTTAAACTCTCGCACATAAAATTTAATCATTTCTAGTTGTAAGAATAAAGGAGCACAAAAATGAGTTGAAGAGGAAGAAAAATAAT-----AAAAAG
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012104165v1     2275716 845 +   2316924 GTTTCAGTGACAGACTGAGAGATAGATTAATT----ACAAAGAGAAAT-CTAGTTGCTTCTTAGAACCACTGAGCAGATGTTT-CAAAGGTTAGAAAAGGCTCCCTGAAATGAAATGCTCTCTGCCCTTCAGATGTATATTAGGCAGTGGCAGTATGATCTACACATATTTCAATTT--CCTAAGAATGCATAGACTTGAAAAACATGTGCCTTTTTACTCACCTTATTTTGATAAATATCCTTTAATAAAAAGGAATTATGAAGG-AATACACTTGAGTTTTTCAAACATTCAG---AGGATGGAGAGACTGTAGTGTACA--TGAGTATTTAAGAATTAGCTTCACAACT--TAGGTTTTCAATTGCTA-CCATGTTCCAAAGAGAAGAAAGCATGGGTTAGGAAGA----------------------------CAATAGTTGAAAATA------------TCAGAATGCTTTGTGGGTGTGTTATTTTTAAGCTCTTCCTGAGACCTCTTGGGCATTGTTTTCCAACAGGCCATTAATCCTTATCCCAGATGAGGAGTTAGCAGAGAAAATTCCTTGGGACAGAGATCTCTATGGAAATGCTACTTATGTACAATTAGTTTCCTAGTGAACTGAAGTTGGTAGGAAGTCTCTTCTGTTGTCAGATGTATTTTAAAATACACTTACTCAATTTCTCAAAATAG-------TAGACACCAATTTTAAATGA------GATGCAATTAGAAATGAGCTAGTTTGAATAAATGATTCTGAAGAACTTATATGAGAGTTCCCTGAATATCTTACCTCATTAGCTCTTAAACTCTCACACATAAAATTTAATCATTTCTAGTTGTAAGAATAAAGGAGCACAAAAATGATTTGAAGAGGAAGAAAAATAAT-----AAAAAG
i manLeu1.NW_012104165v1   C 0 I 2
s colAng1.NW_012115566v1     2188076 833 -   3067355 GTTTCAGTGAGAGACTGAGAGGAAGATGAATT----ACAAAGAGAAAT-CTAGTTGCTTCTTAGAAGCACTGAGTAAATGTTTCCAAAGGTTAG-------------AAATGAAATGCTCTCTACCTTTCAGATGTATATTAGGCAGTGGCAGTATGATCTACACATATTTCAATTT--CCTAAGAAAGCATGAACTTTAAAAACATGAGCCTTTTTACTTACTTTATTTTGATAAATATCCTTCAATAAAAAGGAATTGTGAAGG-AATACACTTGAAGGTTTCAAACTTTCAG---AAGATGGATAAACTGTAGTACATA--GAAGTATCTAAGAATTAGCTTTACAATT--TAGGTTTTCAGTTGCTA-TAGGGTTCCAAAGAGAAGAAAGCATGAGTTAGGAAGA----------------------------CAATAGTAGAAAATG------------TCAGAATGCTTTGTGGGTGTGTTGTTTTTAAGCTCTTCCTGAGACCTCTTGGGCATTGTTTTTCAACAGGCCGTTAATCCTTATCCCAGATGAGGAGTGAGCAGAGAAAATTCCTTGGGACAGAGATCTCTATGGAAATGCTCCTTATGTACAATTACTTACCTACTGAACTGAGGTTGGTAGGAAGTCTCTTCTGTTGTCAGATGTATTTTAAAATACACTTACTCAATTTCTCAAAACAG-------TAGACACCAATTTTAAATGA------GATGCAATTAGAGATGAGCTAGTTTGAACAAATGATTCTGAAGAACTTATATGAGAGTTCCCTGAATATCTTACCTCATTAGCTCTTAAACTATTGCACATAAAATTTAATCATTTCTAGCTGTAAGAATAAAGGGGCACAAAAATGAGTTGAAATGGAAGAAAAATAAT-----AAAAAG
i colAng1.NW_012115566v1   C 0 I 1
s otoGar3.GL873742           1733239 885 -   2232465 GTATCAGTGAGACACTGAGAGT--GATTAATT----ACAAAGGGAAAT-CTGGTTGCCTCCTAGAGCCATTAATTAGGTATTTCCAAAGCTGAGAAAAGGCTGCCTGAAATGAAATGCTATCTGCCTTCAATGTGTGTATCA------GTCCCTATGAACTATACACATTTCAACCCTCCCTAAGAATGCATGACCCTTCAAAACATATACCTTTTTACTTACCTTATTTGGATAAATATCCTTCAATAAAAAGAAATTGTGAAGGAAATACACTTGAGCTTTCCACACTTTCAGAGAAGGATAGAGAAACTGTAGTATGCAGGTGAGTACTTAAGAATTAGCTTCAGAACTGATAGGTTTTCAATTGATT-CTG-GTGCCAAAGAGAAGAAAGCATAGGTTAGGAAGATTCCTATTCCTTCCTATTTTCTGGGAAGCAATGGTAGAAAATAGGTAGAAAATATCAAGAATGCTTCGTGGGTGTGTTATTTGTATGCTATTCCTGAAACCTCTTGGGAGCTGTTTTCAGATAGCCCATTTATCCTTATCCCAGATGAGGCGTTAGCAGAGAAAGTTCCTTGGGACAGAGCTCTCTGTGGAAATGTTTCTTGTGTCCAATTAGTCACCCACTGAACTGAGCTTTGTAGCAAGTATTTTCTGTTGTCAGATGTGTTTTAAAATAAACTTATTCAGTTTTCCAACACAC-------TGGATGCCAATTTTAAATAG------GATGAACTTCACTAAAAGCTAGTTTGAATAAATGATTCTGAGGAATTTTAATGAGAGTTCCTTGAATATCTTCTTTTGTTAGTTCCTAGAATATGTCACAGAAGATTTAATCATTTGTAG-TGTAACAATAGATGAGCAC-AAAATGAGTTGGAAGGAAAGAAAAAAAAT-----AAAAAG
i otoGar3.GL873742         I 669 I 2
s dasNov3.JH570037            327362 842 -    859332 ATTTgagagagagagagagaaagagagTAATTTATCACAAAGAAAAATCCTAGTTGCACCTTACAGTTACTGATTAGTTATTC-CCAAGTTCAGAGAAAACTCCCTGGTATAACATGCTTTGTTCCTTTTATGTGTATATTA------TGTCCTATG-TTTGCCCATGTTCAAACTTTTCCTAAAAACACATGACATTTAAAAAAAAATG----TTTACTCACCTTATTTTGGGAAAAATCACACAATGGGAAGCAATTATGGAGA-ACTACTTTCAAATTTCT-AAATGTTCCA---AGAAAGCA-AAACTGTAGTACACAGATGCATGTTAAAAAATTACCT--ACAGTT-----GCTATCAGCTGATAGTAGGACCCCAAAGAAAAGAAAGCATGTGTTAAGATGA----------------------------TAATAGATAAAATCA--------------AAGATGCTTTGCTGCTGTGTTATTTGTATTATTTTTCTGGGACCTCTTGGGCATTGGATTCTGACACATCATTTGTACTTATCCCAGATGCATGACCAG------ATGTCCCTTGGGATGAAGGTctctgaggaaatgtttcttaaattcagtcacttacctactcctgtgaggttcacagtaagtttttcctgtt---agatttgtcttgaaataaactcagtcaaAATAAAAAAAAAAAAACACCTAAACAACACTGCAAAACAATTTAAGGACACTGTTAGAGTAGAGAAAACTTGAGTAAATCATATTAAGGAATTTAAATATGAGTATTTTGAGCATCTTGCTTCATTCATTATTAGAATATGGTACGAAAGATTCCATTATTTTTATTCATAA-AATAAAAGGGCACAAAGATGACTTGAATGGCAAGGAAAAAAGTCCAGCAAAAA-
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=35436.000000
s hg38.chr6_GL000254v2_alt    411488 12 +   4827813 A------TATTTCCAATG
s panTro5.chr6              29386113 11 + 175400573 A-------ATTTCCAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29631814 11 + 173848474 A-------ATTTCCAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5428627 14 +   6154872 AG----ATATTTCCAATG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29587426 12 + 172585720 ------ATATTTCCAATg
i rheMac8.chr4             I 2 I 80910
s macFas5.chr4              29248661 12 - 170955103 ------ATATTTCCAATg
i macFas5.chr4             I 2 I 82327
s macNem1.NW_012011356v1     2255350 12 -   2996164 ------ATATTTCCAATg
i macNem1.NW_012011356v1   I 2 I 83752
s chlSab2.chr17             28554824 12 -  71996105 ------ATATTTCCAATG
i chlSab2.chr17            I 2 I 5244
s manLeu1.NW_012104165v1     2276563 12 +   2316924 ------ATATTTCCAATg
i manLeu1.NW_012104165v1   I 2 I 7149
s colAng1.NW_012115566v1     2188910 12 -   3067355 ------GATTTTCCAATG
i colAng1.NW_012115566v1   I 1 C 0
s otoGar3.GL873742           1734126 12 -   2232465 ------ATTTTTCCAGTG
i otoGar3.GL873742         I 2 C 0
s dasNov3.JH570037            328204 17 -    859332 -ATTCTATCTCTGCAATG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e cerAty1.NW_012001495v1     2133811 5841 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=11511.000000
s hg38.chr6_GL000254v2_alt    411500 3 +   4827813 AGA
s panTro5.chr6              29386124 3 + 175400573 AGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29631825 3 + 173848474 AGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5428641 3 +   6154872 AGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29668348 3 + 172585720 AGA
i rheMac8.chr4             I 80910 C 0
s macFas5.chr4              29331000 3 - 170955103 AGA
i macFas5.chr4             I 82327 C 0
s macNem1.NW_012011356v1     2339114 3 -   2996164 AGA
i macNem1.NW_012011356v1   I 83752 C 0
s colAng1.NW_012115566v1     2188922 3 -   3067355 AGA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1734138 3 -   2232465 AGA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            328221 3 -    859332 AAA
i dasNov3.JH570037         C 0 T 34343
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2276575 7149 +   2316924 I
e chlSab2.chr17             28554836 5244 -  71996105 I
e cerAty1.NW_012001495v1     2133811 5841 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=150582.000000
s hg38.chr6_GL000254v2_alt    411503 59 +   4827813 AGGAATCAAGTGATAGTTT-AAAACATTTCATAATATTTAATGCTTTCATATTAAAATGA
s panTro5.chr6              29386127 59 + 175400573 AGGAATCAAGTGATAGTTT-AAAACATTTCATAATATTTAATGCTTTCATATTAAAATGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29631828 59 + 173848474 AGGAATCAAGTGATAGTTT-AAAACATTTCATAATATTTAATGCTTTCATATTAAAATGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5428644 60 +   6154872 AGGAATCAAGTGATAGTTTAAAAACATTTCATAATATTTAATGCTTTCATATTAAAATGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29668351 60 + 172585720 AGGAATCAAGTGATAGTTTAAAAACACTTTGTAATATTTAATGCTTTTATATTAAAATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29331003 60 - 170955103 AGGAATCAAGTGATAGTTTAAAAACACTTTGTAATATTTAATGCTTTTATATTAAAATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2339117 60 -   2996164 AGGAATCAAGTGATAGTTTAAAAACACTTTGTAATATTTAATGCTTTTATATTAAAATGT
i macNem1.NW_012011356v1   C 0 C 0
s colAng1.NW_012115566v1     2188925 60 -   3067355 AGGAATCAAGTGATAGTTTAAAAACACTTTGTAATGTTTAATGCTTTTATATTAAAATGT
i colAng1.NW_012115566v1   C 0 I 309
s otoGar3.GL873742           1734141 56 -   2232465 AGAAATTACGTGATACTTA-AAAACA--TCaaaatatttaatatttttataataaaaaa-
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2276575 7149 +   2316924 I
e chlSab2.chr17             28554836 5244 -  71996105 I
e cerAty1.NW_012001495v1     2133811 5841 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=414686.000000
s hg38.chr6_GL000254v2_alt    411562 161 +   4827813 TGAAATGATAATTTCTTCA------CTCTCACCAAGCACATACCACATAACATTAGGCAGATACACAGATAACTTTGAGATTTTAAAAATTACATACAAAATGCATAAATACATTATGTTGAAAAACAAATTCAAGTGCATGGGATAGCAAATACAAATTTAAAGGG
s panTro5.chr6              29386186 161 + 175400573 TGAAATGATAATTTCTTCA------CTCTCACCAAGCACATACCACATAACATTAGGCAGATACACAGATAACTTTGAGATTTTAAAAATTACATACAAAATGCATAAATACATTATGTTGAAAAACAAATTCAAGTGCATGGGATAGCAAATACAAATTTAAAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29631887 161 + 173848474 TGAAATGATAATTTCTTCA------CTCTCACCAAGCACATACCACATAACATTAGGCAGATACACAGATAACTTTGAGATTTTAAAAATTACATACAAAATGCATAAATACATTATGTTGAAAAACAAATTCAAGTGCATGGGATAGCAAATACAAATTTAAAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5428704 161 +   6154872 TGAAATGATAATTTCTTCA------CTCTCACCAAGCACATACCACATAACATTAGGCAGATACACAGATAACTTTGAGATTTTAAAAATTACCTACAAAATGCATAAATACATTATGTTGAAAAACAAATTCAAGTGCATGGGATAGCAAATACAAATTTAAAGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29668411 165 + 172585720 TGAAATGACAATTTCTTCACTCTCTCTCTCACCATGCACATGCCACATAACATTAGGCAGATACACAGATCACTTTAAGATTTTGAAAATTACATACAAAATGCGTAAATACATTATGTTGAAAAACAAATTCAAGTACATGGAATAGCAGATAGAAATGGAAAG--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29331063 165 - 170955103 TGAAATGACAATTTCTTCACTCTCTCTCTCACCATGCACATGCCACATAACATTAGGCAGATACACAGATCACTTTAAGATTTTGAAAATTACATACAAAATGCGTAAATACATTATGTTGAAAAACAAATTCAAGTACATGGAATAGCAGATAGAAATGGAAAG--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2339177 165 -   2996164 TGAAATGACAATTTCTTCACTCTCTCTCTCACCATGCACATGCCACATAACATTAGGCAGATACACAGATCACTTTAAGATTTTGAAAATTACATACAAAATGCGTAAATACATTATGTTGAAAAACAAATTCAAGTACATGGAATAGCAGATAGAAATGGAAAG--
i macNem1.NW_012011356v1   C 0 C 0
s colAng1.NW_012115566v1     2189294 161 -   3067355 TGAAATGACAATTTCTTCA----CTCTCTCACCATGCACATGCCACATAACATTAGACAGATACTCAGATCACTTTAAGATTTAAAAAATTACATACAAAATGCATAAATACATTATGTTGAAAAACAAATTCAAGTACACGGAATAGCAGATAGAAATGGAAAG--
i colAng1.NW_012115566v1   I 309 C 0
s otoGar3.GL873742           1734197 160 -   2232465 tGAAACAACAATTTCTTTT-----TCCCTCATCA--CACATTTCACACAATATTTGTCAGATATGTACACAAAATTTTGATTTTTAAAATTATATGCATTATCCATTAGGACATTATTTTGAAAAACAAATTCAAATAGGTAGAATAGCAGGtacggatagaaaggt
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2276575 7149 +   2316924 I
e chlSab2.chr17             28554836 5244 -  71996105 I
e cerAty1.NW_012001495v1     2133811 5841 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=296614.000000
s hg38.chr6_GL000254v2_alt    411723 137 +   4827813 ----tttt--------------ttttttaagatggagtcttgctgtgttgcccagtctggagtgcagtggtatgatctcagctcactgcaacctctgctgtac-agttcaagcgattctcctgccgcagcctcccaagtggctgggattacaggcA
s panTro5.chr6              29386347 139 + 175400573 --tttttt--------------ttttttaagatggagtcttgctgtgttgcccagtctggagtgcagtggtatgatctcagctcactgcaacctctgctgtcc-agttcaagcgattctcctgccacagcctcccaagtggctgggattacaggcA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29632048 137 + 173848474 ----tttt--------------ttttttaagatggagtcttgctgtgttgcccagtctggagtgcagtggtatgatctcagctcactgcaacctctgctgtcc-agttcaagcgattctcctgccacagcctcccaagtggctgggattacaggcA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5428865 141 +   6154872 tttttttt--------------ttttttaagatggagtcttgctgtgttgcccagtctggaatgcagtggtatgatctcagctcactgcaacctctgctgtcc-agttcaagcgattctcctgccacagcctcccaagtggctgggattacaggcA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29668576 138 + 172585720 ----tttt--------------ttttttgagatggagtcttgctctgttgcctaggctggagtgcagtgtcatgaccttcgttcactgcaagctctgccacccgggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29331228 138 - 170955103 ----TTTT--------------ttttttgagatggagtcttgctctgttgcctaggctggagtgcagtgtcatgaccttcgttcactgcaagctctgccacccgggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2339342 138 -   2996164 ----tttt--------------ttttttgagatggagtcttgctctgttgcctaggctggagtgcagtgtcatgaccttcgttcactgcaagctctgccacccgggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggTA
i macNem1.NW_012011356v1   C 0 C 0
s colAng1.NW_012115566v1     2189455 152 -   3067355 ----tttttgtttttgtttttgttttttgtgatggagtctttctctgttgcctaggctggagtgcagtgtcatgaccttcgttcactgcaagctctgccacccgagttcaagtgattctcctgccttagcctcccaagtagctgggattataggTA
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1734357   0 -   2232465 C
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2276575 7149 +   2316924 I
e chlSab2.chr17             28554836 5244 -  71996105 I
e cerAty1.NW_012001495v1     2133811 5841 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1802243.000000
s hg38.chr6_GL000254v2_alt    411860 687 +   4827813 TTCCCTTTGATGACCTACTGTCATGGTCTGTTGTCCCTCTCCTTTCTTTAAAGGTAACCGTTAGTGTCAT---AAGGGTGTGCATCTTTCCACATTACATAtgtgctggatattttccactcccccttccttcccctgccccagattcactctctatccaaccatgtttgtttctaccctgtgttgtgcctctagaggcgaaatcaagagaattccatgatatttgacttctggttgtgttcagccaatgag--tcaccagctgaggatt--agagtgaggcagcagctagtttgaagtattttcccctaccctctccttcagatgggacaaatgaggctacttgtattgctcaaccaaagatcacaggtcatggatgtagccacgtacaggttctctctctttctgctttgtaatagtactttctccctttgctacttcaggccttgtgttggttgct-aagcctcccaactgttgctagattcagagtagtccatatataatacatatacagaaatcccttgttgatgttcctaaatccttctcacaactttgtatttacttcttttgttaaacctctttcag--ttcccataggagcatgccatctattttctgctgggaccATAGGTGACTGTAACTTTCCATTacaaaca----aaggtcatttcctgctttaggacttttgaattaga-------------tgttttt
s panTro5.chr6              29386486 687 + 175400573 TTCCCTTTGATGACCTACTGTCATGGTCTGTTGTCCCTCTCCTTTCTTTAAAGGTAACCATTAGTGTCAT---AAGGGTGTACATCTTTCCACATTACATAtgtgctggatattttccactcccccttccttcccctgcaccagattcactctctatccaaccatgttcgtttctaccctgtgttgtgcctctagaggcgaaatcaagagaattccatgatatttgacttctggttgtgttcagccaatgag--tcaccagctgaggatt--agagtgaggcagcagctagtttgaagtattttcccctaccctctccttcagatgggacaaatgaggctacttgtattgctcaaccaaagatcacaggtcatggatgtagccacgtacaggttctctctctttctgctttctaatagtactttctccctttgctacttcaggccttgtgttggttgct-aagcctcccaactgttgctagattcagagtagtccatatataatacatatacagaaatcccttgttgatgttcctaaatccttctcacaactttgtatttacttcttttgttaaacctctttcag--ttcccataggagcatgccatctattttctgctgggaccATAGGTGACTGTAACTTTCCATTacaaaca----aaggtcatttcctgctttaggacttttgaattaga-------------tgttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29632185 687 + 173848474 TTCCCTTTGATGACCTACTGTCATGGTCTGTTGTCCCTCTCCTTTCTTTAAAGGTAACCATTAGTGTGAT---AAGGTTGTACATCTTTCCACATTACATAtgtgctggatattttccactcccccttccttcccctgcaccagattcactctctatccaaccatgttcgtttctaccctgtgttgtgcctctagaggcgaaatcaagagaattccatgatatttgacttctggttgtgttcagccaatgag--tcaccagctgaggatt--agagtgaggcagcagctagtttgaagtattttcccctaccctctccttcagatgggacaaatgaggctacttgtattgctcaaccaaagatcacaggtcatggatgtagccacgtacaggttctctctctttctgctttctaatagtactttctccctttgctacttcaggccttgtgttggttgct-aagcctcccaactgttgctagattcagagtagtccatatataatacatatacagaaatcccttgttgatgttcctaaatccttctcacaactttgtatttacttcttttgttaaacctctttcag--ttcccataggagcatgccatctattttctgctgggaccATAGGTGACTGTAACTTTCCATTacaaaca----aaggtcatttcctgctttaggacttttgaattaga-------------tgttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5429006 684 +   6154872 TTCCCTTTGATGACCTACTGTCATGGTCTGTTGTCCCTCTCCTTTCTTTAAAGGTAACCATTAGTGTCAT---AAGGGTGTGCATCTTTCCACATTACATAtgtgctggatattttccactcccccttccttcccctgccccagattcactctctatccaaccatgtttgtttctaccttgtgttgtgcctctagaggcgaaatcaagagaattccatgatatttgacttctggttgtgttcagccaatgag--tcaccagctgaggatt--agagtgaggcagcagctagtttgaagtattttcccctaccctctccttcagatgggacaaatgaggctacttgtattgttcaaccaaagatcacaggtcatggatgtagccacgtacaggttctctctctttctgctttctaacagtactttctccctttgctacttcaggccttgtgttggttgct-aagcctcccaactgttgctagattcagagtagtccatatataatacat---cagaaatcccttgctgatgttcctaaatccttctcacaactttgtatttacttcttttgttaaacctctttcag--ttcccataggagcatgccatctattttctgctgggaccATAGGTGACTGTAACTATCCATTacaaaca----aaggtcatttcctgctttaggacttttgaattaga-------------tgttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29668714 702 + 172585720 TTCTCTTTGACAACCTACTCTGAAATTCTGTAGTCCTTCTCCTTTCTTTAAAGGTAACCATTAGTGCCAC----AGGATGTGCATCTTTCCGAATTACATACgtgctggatattttccattccc----ccttcccctgacccagatccactctgtctccaaccatgtttgtttctaccctgcattgtgtgtctagaggtggaatcaagataattccttgatatctggcttctggttgtgttcagtcaatgag--tcctcagctgaggatt--agagtgaggcagcagctagtttgaagtattttcccctaccatccccctcaagtggaacaaatgaggctacttgtattgctcaacaaaagatcacaggtcattgatgtaaccatgtacagattctctctctttctgctttctaatagtactttctccctttgctacttcagggtttgtgttggttgctaaagcctccccactgttgctaggtccagggtagtgcatatataatacatatacagaaatcccttcttggtgtttctaaatccttctcacacctttgtaagtacttcttttgttaaacttccctcagttttccaggaggatcatgacatctattttctgctgggaccactgatGAATATAACTTTCCATTAcaaacagaccaaggtcatttcctgcttcaggacatttgaattagctttttttttttttttttttt
i rheMac8.chr4             C 0 I 10
s macFas5.chr4              29331366 702 - 170955103 ttCTCTTTGACAACCTACTCTGAAATTCTGTAGTCCTTCTCCTTTCTTTAAAGGTAACCATTAGTGCCAC----AGGATGTGCATCTTTCCGAATTACATACGTGCtggatattttccattccc----ccttcccctgacccagatccactctgtctccaaccatgtttgtttctaccctgcattgtgtgtctagaggtggaatcaagataattccttgatatctggcttctggttgtgttcagtcaatgag--tcctcagctgaggatt--agagtgaggcagcagctagtttgaagtattttcccctaccatccccctcaagtggaacaaatgaggctacttgtattgctcaacaaaagatcacaggtcattgatgtagccatgtacagattctctctctttctgctttctaatagtactttctccctttgctacttcagggtttgtgttggttgctaaagcctccccactgttgctaggtccagggtagtgcatatataatacatatacagaaatcccttcttggtgtttctaaatccttctcacacctttgtaagtacttcttttgttaaacttccctcagttttccaggaggatcatgacatctattttctgctgggaccatagATGAATATAACTTTCCATTACAAACAGACCAAGGTCATTTCCTGCTTCAGGACATTTGAATTAGCtttttttttttttttttttt
i macFas5.chr4             C 0 I 10
s macNem1.NW_012011356v1     2339480 689 -   2996164 TTCTCTTTGACAACCTACTCTGAAATTCTGTAGTCCTTCTCCTTTCTTTAAAGGTAACCATTAGTGCCAC----AGGATGTGCATCTTTCCGAATTACATACgtgctggatattttccattccc----ccttcccctgacccagatccactctatctccaaccatgtttgtttctaccctgcattgtgtgtctagaggtggaatcaagataattccttgatatctggcttctggttgtgttcagtcaatgag--tcctcagctgaggatt--agagtgaggcagcagctagtttgaagtattttcccctaccatccccctcaagtggaacaaatgaggctacttgtattgctcaacaaaagatcacaggtcattgatgtagccatgtacagattctctctctttctgctttctaatagtactttctccctttgctacttcagggtttgtgttggttgctaaagcctccccactgttgctaggtccagggtagtgcatatataatacatatacagaaatcccttcttggtgtttctaaatccttctcacacctttgtaagtacttcttttgttaaacttccctcagttttccaggaggatcatgacatctattttctgctgggaccATAGATGAATATAACTTTCCATTAcaaacagaccaaggtcatttcctgcttcaggacatttgaattagc-------------ttttttt
i macNem1.NW_012011356v1   C 0 I 10
s colAng1.NW_012115566v1     2189607 689 -   3067355 TTCTCTTTGACAACCTACTCTGAAGTTCTGTAGTCCTTCTCTTTTCTTTAAAGGTAACCACTAGTGCCAC----AGGATGTGCATCTTTCCGAATTACATACgtgctggatactttccattccc----ccttcccctgacccagatccactgtctatccaaccgtgtttgtttctaccctgcattgtgtgtctagaggtggaatcaagataattccttgatatctggcttctggttgtgttcagtcaatgag--tcctcagctgaggatt--agagtgaggcagcagctggtttgaagtattttcccctaccatccccctcaagtggaacaaatgaggctacttgtattgctcaacaaaagatcacaggtcattgatgtagccatgtacagattctctctctttctgctttctaatactactttctccctttgctacttcagggtttgtgttggttgctaaagcctccccactgttgctagatccagggtagcgcatatataatacacatacagaaatcccttcttggtgtttctaaatcctcctcacatctttgtaagtacttcttttgttaaacttcccccagttttccaggaggatcatgccatctattttctgctgggaccATAGATGAATATAACTTTCCATTAcaaacagaccaaggtcatttcctgctttaggacatttgaattagc-------------ttttttt
i colAng1.NW_012115566v1   C 0 I 56
s otoGar3.GL873742           1734357 678 -   2232465 ttccctttgatcacctac-accatggtccataatgcctctcttttctctaaagctaaccactggtatcatgtgggtggtgtgtgtctttccaCAGTAGATGtgtgctggatattttccactct-----ccttctcctgccccagattcatttcctatcctactatatatgttgctaccctgcattgcgc-tacagaggctgaatcaagaaaattccttgatatctgacttctgattgtgttagggcaatgggaataatcaactgaggattacagaatgaaagaacaactagtttgaagcatttcccccttagctccctcttagctggaacatgtgaagctgcctgtgtggatcaatcaaag-tcacactttctggaaatagtcatgtacagattctctctcttc---attcccagtaccacttcctccctttgctacttcagggcttggattggtaac---aggttctccactattgctagtttcaggtcactgcatgtatcatacacatgcagaagtcccttgctggtgttcctaaacccctctcacacccttgtaggtatttcct---ttaaacttccctcaatattccagggagaatatgccatctgttttctgctgaggccttagctgGC-ATAACT-CCCTTTacagacc----aaacttatttcctgtttcaggacttttgaattagc-------------ttttctc
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2276575 7149 +   2316924 I
e chlSab2.chr17             28554836 5244 -  71996105 I
e cerAty1.NW_012001495v1     2133811 5841 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=122166.000000
s hg38.chr6_GL000254v2_alt    412547 60 +   4827813 aggtctaaaatgctctttctttgattttatcacgactggctcctttctgtgtttcaggtt-
s panTro5.chr6              29387173 60 + 175400573 aggtctaaaatgctctttctttgattttatcacgactggctcctttctgtgtttcaggtt-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29632872 60 + 173848474 aggtctaaaatgctctttctttgattctatcacgactggctcctttctgtgtttcaggtt-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5429690 60 +   6154872 gggtctaaaatgctctttctttgattttatcatgactggctcctttctgtgtttcaggtt-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29669426 60 + 172585720 ctgtctaaaatgctcttcttctgattttatcatgactggttcctttctgtgtctcagatt-
i rheMac8.chr4             I 10 I 1
s macFas5.chr4              29332078 60 - 170955103 ctgtctaaaatgctcttcttctgattttatcatgactggctcctttctgtgtctcagatt-
i macFas5.chr4             I 10 I 1
s macNem1.NW_012011356v1     2340179 60 -   2996164 ctgtctaaaatgctcttcttctgattttatcatgactggctcctttctgtgtctcagatt-
i macNem1.NW_012011356v1   I 10 I 1
s otoGar3.GL873742           1735035 60 -   2232465 ctgcctaaaatacccttccctt-attttatcagggctgtctccttcctgtctttcaggttt
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e colAng1.NW_012115566v1     2190296 56 -   3067355 I
e manLeu1.NW_012104165v1     2276575 7149 +   2316924 I
e chlSab2.chr17             28554836 5244 -  71996105 I
e cerAty1.NW_012001495v1     2133811 5841 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1974135.000000
s hg38.chr6_GL000254v2_alt    412607 766 +   4827813 gatctcaaatgtcacctAAGAAGGAATATCTAATATGAATATACTACACAGTATCTCTATATCATATTCTCTTTTAATTTTCTGCAAAAGAATGAAAGCTTTCTTAGTTATTTTGCTTTTGAAGTCTCCCCCTCTAGTATGCATAGTTTTTGACAATAGCAAC-TTAAATAATACAATTAAATCATCTTGAAC---ATAT--TGTTACTTGATTTTTACATACATATGTacacgcacacacacg-----------cacacacacTTTTTGTCATTTCAGAGACAATGA----CTGATAAAGGAATTTTTTTCTTTTAAACACATCTCTAGCTTATctacttttgctgaattccataaactttggtatgttgtgtttctattttcattctttgcaaattatttgcta-ttttcccttgtgatttcctctgagccattcattatttaggaatgtgttgtttcatcgccacttacttgtgtatttcacaatattttgcctgatattgatttctaattttattccattgtggttagaggacatcctttacattattttaatc-ttttaaatgtattgtgatttgctttatgac----cttatagactaatctgtagaatgt-ttcatgtgccctgagtaatatatgtattctactactattgggtggagttttctgtagaggtcaattagctgtagttagtttataatgctgttcacatcttctatttccttgtggacctt-tatctaattgttctat-tgttattgaaagtgggatgctgacattgaactataattatg
s panTro5.chr6              29387233 765 + 175400573 gatctcaaatgccacctAAGAAGGAATATCTAATATGAATATACTACACAGTATCTCTATATCATATTTTCTTTTAATTTTCTGCAAAAGAATGAAAGCTTTCTTAGTTATTTTGCTTTTGAAGTCTCCCCCTCTAGTATGCATAGTTTTTGACAATAGCAAC-TTAAATAATACAATTAAATCATCTTGAAC---ATAT--TGTTACTTGATTTTTacatacatacatacacgcacacacacg-----------cacacacacTTTTTGTCATTTCAGAGACAATGA----CTGATAAAGGAATTTTTTTCTTTTAAACACATCTCTAGCTTATctacttttgctgaattctgtaaactttggtatgttgtgtttctattttcattctttgcaaattatttgcta-ttttcccttatgatttcctctgagccattcattatttaggaatgtgttgtttcatcgccacttacttgtgtatttcacaatattttg-ctgatattgatttctaattttattccattgtggttagaggacatcctttacgttattttcatc-ttttaaatgtattgtgatttgctttatgac----cttatagactaatctgtagaatgt-ttcatgtgccctgagtaatatatgtattctactactattggatggagttttctgtagaggtcaattagctctagttagtttataatgctgttcacatcttctatttccttgtggacctt-tatctaattgttctat-tgttattgaaagtgggatgctgacattgaactataatcatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29632932 765 + 173848474 gatctcaaatgtcacctAAGAAGGAATATCTAATATGAATATACTACACAGTATCTCTATATCATATTCTCTTTTAATTTTCTGCAAAAGAATGAAAGCTTTCTTAGTTATTTTGCTTTTGAAGTCTCCCCCTCTAGTATGCATAGTTTTTGACAATAGCAAC-TTAAATAATACAATTAAATCATCTTGAAC---ATAT--TGTTACTTGATTTTTacatacatacatacacgcacacacacg-----------cacacacacTTTTTGTCATTTCAGAGACAATGA----CTGATAAAGGAATTTTTTTCTTTTAAACACATCTCTAGCTTATctacttttgctgaattccgtaaactttggtatgttgtgtttctattttcattctttgcaaattatttgcta-ttttcccttatgatttcctctgagccattcattatttaggaatgtgttgtttcatcgccacttacttgtgtatttcacaatattttg-ccgatattgatttctaattttattccattgtggttagaggacatcctttacgttattttcatc-ttttaaatgtattgtgatttgctttatgac----cttatagactaatctgtagaatgt-ttcatgtgccctgagtaatatatgtattctactactattgggtggagttttctgtagaggtcaattagctctagttagtttataatgctgttcacatcttctatttccttgtggacctt-tatctaattgttctat-tgttattgaaagtgggatgctgacattgaactataatcatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5429750 763 +   6154872 gatctcaaatgtcacctAAGAAGGAATATCTAATATGAATATACTACACAGTATCTCTATATCATATTCTCTTTTAATTTTCTGCAAAAGAATGAAAGCTTTCTTAGTTATTTTGCTTTTGAAGTCTCCCTCTCTAGTATGCATAGTTTTTGACAATAGCAAC-TTAAAAAATACAATTAAATCATCTTGAAC---ATAT--TGTTACTTGATTTTTacatacatacata----tacacacacg-----------cacacacacTTTTTGTCATTTCAGAGACAATGA----CTGATAAAGGAATTTTTTTCTTTTAAACACATCTCTAGCTTATctacttttgctgaattccataaactttggtatgttgtgtttctattttcattctttgcaaattatttgctatttttcccttatgatttcctctgagccattcattatttaggaatgtgttgtttcatcgccacttacttgtgtatttcacaatattttgcctgatattgatttctaattttattccattgtggatagaggacatcctttacattattttaatc-ttttaaatgtattgtgatttgctttatgac----cttatagactaatctgtagaatgt-ttcatgtgccctgagtaatatatgtattctactactattgggtggagttttctgtagaggtcaattagctctagttagtttataatgctgttcacatcttctatttccttgtggacctt-tatctaattgttctat-tgttattgaaagtgggatgctgacattgaactataattacg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29669487 778 + 172585720 gatctcaaatatcacctAAGAAGGAATATCTAATATGAGTATTCTACACAGAATTTCTATATCATAGTCTCTTTTAATTTTCAGCAAAAGAATGAAAGCTTTCTTAGTTATTTTGCTTCTGAAGTCTTCCCCTCTAGGATGCATAGTTTTTGACA--AGCAAA-TTAAAAAATACAATTAAACCATCATGAACTTATTAT--TGTTACCTGATTTTTacacacactcatgcacacacacacaca--gcacacatacacacacacTCTTTGTCATTTCAGAGAAAATGA----CTAATAAAGGA-TTTTTTTCTTTTAAACACATCTCTAGCTTATctacttttgttgcattccataagctttggtatgttgtgtttctattttcattctttgcaaattatttgcta-agttcccttatgatttcatctgatccatccattatttaggaatgtattgtttaattgccacttacttg-gtatttcacaatattttgtctgatattgatttccagttttattccattgtgtatagaggacatactttacatgatttcaatc-ttttaaatgtattgtgatttgttttatgacctaacttacagcctaatctgtagaatgt-tccat-tgccctgagtaatacatgtattctaccactattgggtggagttttctacagatgccagttagctctagttagtttataatgctattcacattatctatttccttgtagatcttctgtctgattattctat-tgttcttgaaagtgggatgttgacattgaactataattgtg
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              29332139 778 - 170955103 gatctcaaatatcacctaagaAGGAATATCTAATATGAGTATTCTACACAGAATTTCTATATCATAGTCTCTTTTAATTTTCAGCAAAAGAATGAAAGCTTTCTTAGTTATTTTGCTTCTGAAGTCTTCCCCTCTAGGATGCATAGTTTTTGACA--AGCAAA-TTAAAAAATACAATTAAACCATCATGAACTTATTAT--TGTTACCTGATTTTTACACacactcatgcacacacacacaca--gcacacatacacacacactcttTGTCATTTCAGAGAAAATGA----CTAATAAAGGA-TTTTTTTCTTTTAAACACATCTCTAGCTTATCTACttttgttgcattccataagctttggtatgttgtgtttctattttcattctttgcaaattatttgcta-agttcccttatgatttcatctgatccatccattatttaggaatgtattgtttaattgccacttacttg-gtatttcacaatattttgtctgatattgatttccaattttattccattgtgtatagaggacatactttacatgatttcaatc-ttttaaatgtattgtgatttgttttatgacctaacttacagcctaatctgtagaatgt-tccat-tgccctgagtaatacatgtattctaccactattgggtggagttttctacagatgccagttagctctagttagtttataatgctattcacattatctatttccttgtagatcttctgtctgattattctat-tgttcttgaaagtgggatgttgacattgaactataattgtg
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     2340240 778 -   2996164 gatctcaaatatcacctAAGAAGGAATATCTAATATGAGTATTCTACACAGAATTTCTATATCATAGTCTCTTTTAATTTTCAGCAAAAGAATGAAAGCTTTCTTAGTTATTTTGCTTCTGAAGTCTTCCCCTCTAGGATGCATAGTTTTTGACA--AGCAAA-TTAAAAAATACAATTAAACCATCATGAACTTATTAT--TGTTACCTGATTTTTacacacactcatgcacacacacacaca--gcacacatacacacacacTCTTTGTCATTTCACAGAAAATGA----CTAATAAAGGA-TTTTTTTCTTTTAAACACATCTCTAGCTTATctacttttgttgcattccataagctttggtatgttgtgtttctattttcattctttgcaaattatttgcta-agttcccttatgatttcatctgatccatccattatttaggaatgtattgtttaattgccacttacttg-gtatttcacaatattttgtctgatattgatttccaattttattccattgtgtatagaggacatactttacatgatttcaatc-ttttaaatgtattgtgatttgttttatgacctaacttacagcctaatctgtagaatgt-tccat-tgccctgagtaatacatgtattctaccactattgggtggagttttctacagatgccagttagctctagttagtttataatgctattcacattatctatttccttgtagatcttctgtctgattattctat-tgttcttgaaagtgggatgttgacattgaactataattgtg
i macNem1.NW_012011356v1   I 1 C 0
s colAng1.NW_012115566v1     2190352 781 -   3067355 gatctcaaatatcacctAAGAAGGAATATCTAATATGAGTATTCTACACAGAATTTCTATATCATAGTCTCTTTTAATTTTCAGCAAAAGAATGAAAGCCTTCTTAGTTATTTTGCTTCTGAAGTCTCCCCCTCTAGGATGCATAGTTTTTGACA--AGCAAA-TTAAAAAATACAATTAAACCATCATGAACTTATTAT--TGTTACTTGATTTTTACACACAGTCATGcacacacacacacaccacacacatacacacacacTCTTTGTCATTTCAGAGAAAATGA----TTAATAAAGGATTTTTTTTCTTTTAAACACATCTATAGCTTGTctacttttgttgcattccataagctttggtatgttgtgtttctgttttcattctttgcaaattatttgcta-agttcccttatgatttcatctgatccatccattatttaggaatgtattgtttaattgcctcttacttg-gtatttcacaatattttgtctgatattgatttccaattttattccattgtgtatagaggacatactttacatgatttcaatc-ttttaaatgtattgtgatttgttttatgacctaacttatagcctaatctgtagaatgt-tccat-tgccctgagtaatacgtgtattctaccactatcgggtggagttttctgcagacgccaattagctctagttagtttataatgctattcacatcatctatttccttgtagattttctgtctgattattctat-tgttattgaaagtgggatgttgacattgaactataattgtg
i colAng1.NW_012115566v1   I 56 C 0
s otoGar3.GL873742           1735095 719 -   2232465 gatc----aaatcacccaagaagcAATATCCAGTATAAGCATACTAATCAGTGTCTCTCTGTCATATTG--TTTTAATTTTCAGCAAAAGAGTTAATTTTTTAAAatttattttgctttctaagtttctccctctaggatgtaaattccataatgatagtaactttAAAAAATGCAATGAAACTGTCATCTGTATATTATTATGTCATTTGATTTTTACACACA-------------------------------TACACACACTTTT--TCATTTCAGAGAAATTAAGtctttaataatgaatgttttttcttttaaagacatctctatctgacctacttttgctatattccacaagtttttgtatattgtgtgtctattatcattcttctcaagttatttgcta-attttctttatgattctttccaaaccattaattatttagaagagtgttgtttaatttccacatacttatatatttcacaatatttt---tgttattgatatctgactttattccattgtggttagaggacatattttataacagtttaatcatttaaaatttactgtgacttgttttatg------------gactaacttctggtatatctccgtgtgccctgaataatatatctattctgct-ctgttgggaagatttttacacagatgtctgttaggtctagtttg-ttataatgttgttcatatcttc-------------------tatttagttgttctatccattattgaaact-ggatgctaaagtttaattgttattgtg
i otoGar3.GL873742         C 0 I 383
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2276575 7149 +   2316924 I
e chlSab2.chr17             28554836 5244 -  71996105 I
e cerAty1.NW_012001495v1     2133811 5841 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=138425.000000
s hg38.chr6_GL000254v2_alt    413373 56 +   4827813 gaattatctattgctccaaacagttctgttagtctttgttttatgtagtttggaga
s panTro5.chr6              29387998 56 + 175400573 gaattatctattgctccaaacagttctgttagtctttgttttatgtagtttggaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29633697 56 + 173848474 gaattatctattgctccaaacagttctgttagtctttgttttatgtagtttggaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5430513 56 +   6154872 gaattatctattgctccaaacagttctgttagtctttgttttatgtagtttggaga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29670265 56 + 172585720 gaattatctattgctcctaacagttctgttagtctttgttttatacagtctggaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29332917 56 - 170955103 gaattatctattgctcctaacagttctgttagtctttgttttatacagtctggaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2341018 56 -   2996164 gaattatctattgctccaaacagttctgttagtctttgttttatgcagtctggaga
i macNem1.NW_012011356v1   C 0 C 0
s colAng1.NW_012115566v1     2191133 56 -   3067355 gaattatctattgctccaaacagttctgttagtctttgttttacgcagtctggaga
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1735814 383 -   2232465 I
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2276575 7149 +   2316924 I
e chlSab2.chr17             28554836 5244 -  71996105 I
e cerAty1.NW_012001495v1     2133811 5841 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1053571.000000
s hg38.chr6_GL000254v2_alt    413429 399 +   4827813 tctgctgcaaggtgcatatgtacttataattgatgtatcttcttgatggaccagcgattttatcatcataaattgtccttctttgtttccagtaataattcttgtctttttgttgatattgtgtaatatcagtatagccatccattagcactctatcttgcttactctttgaatggaata-cttttttcatcttttcagtttcaacctatttgcatttttgaatctaaagtgaatatattgttgacagtatatcattggattgtctttttaaataaaccttgtcaatctcttc-catttTTTaaatgaatagactatttttcagaag----ctttaggtttacaaaa-aattgaatggaaggtgtagagaactcacatgtaaccccttttactccctcccccagag
s panTro5.chr6              29388054 395 + 175400573 tctgctgcaaggtgcatacgtacttataattgatgtatcttcttgatggaccagcgattttatcatcataaattgtccttctttgtttccagtaataattcttgtctttttgttgatattgtgtaatatcagtatag----ccattagcactctatcttgcttactctttgaatggaata-cttttttcatcttttcagtttcaacctatttgcatttttgaatctaaagtgaatatattgttgacagtatatcattggattgtctttttaaataaaccttgtcaatctcttc-catttTTTaaatgaatagactatttttcagaag----ctttaggtttacaaaa-aattgaatggaaggtgtagagaactcacatgtaaccccttttactccctcccccagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29633753 395 + 173848474 tctgctgcaaggtgcatacgtacttataattgatgtatcttcttgatggaccagcgattttatcatcataaattgtccttctttgtttccagtaataattcttgtctttttgttgatattgtgtaatatcagtatag----ccattagcactctatcttgcttactctttgaatggaata-cttttttcatcttttcagtttcaacctatttgcatttttgaatctaaagtgaatatattgttgacagtatatcattggattgtctttttaaataaaccttgtcaatctcttc-catttTTTaaatgaatagactatttttcagaag----ctttaggtttacaaaa-aattgaatggaaggtgtagagaactcacatgtaaccccttttactccctcccccagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5430569 395 +   6154872 tctgctgcaaggtgcatacgtacttataactgatgtatcttcttgatggaccagcgattttatcatcataaattgtccttctttgtttccagtaataattcttgtctttttgttgatattgtgtaatatcagtatag----ccattagcactctatcttgcttactctttgaatggaata-cttttttcatcttttcagtttcaacctatttgcatttttgaatctaaagtgaatatattgttgacagtatatcattggattgtctttttaaataaaccttgtcaatctcttc-cattttttaaatgaatagactatttttcagaag----ctttaggtttacaaaa-aattgaatggaaggtgtagagaagtcacatgtaaccccttttactccctcccccagag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29670321 393 + 172585720 tctgctgcaaggtgcatacatacttataattgatgtatcttcttgatggacctgtgatttcatcatcataaattgtccttttttgtctccagtaataatctttgtctttttgttgatattgtataatatcagtatag----ccattagcactctatcgtggttactctttgaatggaata-cctttttcatgcttt-agtttcaatcaattttcagttttgaatctaaagtgcatatattgttgacagcatatccttggattatgtttttaaatacatcttgtctgtctcttc-catttTTTaaatgaatagactatttttcagaag----ctttaggttcacaaaaaaattgaatggaaggtgtagaaatctcacatgtaaccccttttactctctcatccag--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29332973 394 - 170955103 tctgctgcaaggtgcatacatacttataattgatgtatcttcttgatggaccagtgatttcatcatcataaattgtccttttttgtctccagtaataatctttgtctttttgttgatattgtataatatcagtatag----ccattagcactctatcgtggttactctttgaatggaata-cctttttcatgctttcagtttcaatcgattttcagttttgaatctaaagtgaatatattgttgacagcatatccttggattatgtttttaaatacatcttgtctgtctcttc-cattttttaaatgaatagactatttttcagaag----ctttaggttcacaaaaaaattgaatggaaggtgtagaaatctcacatgtaaccccttttactctctcatccag--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2341074 394 -   2996164 tctgctgcaaggtgcatacatacttataattgatgtatcttcttgatggaccagtgatttcatcatcataaattgtccttttttgtctccagtaataatctttgtctttttgttgatattgtataatatcagtatag----ccattagcactctatcgtggttactctttgaatggaata-cctttttcatgctttcagtttcaatcgattttcagttttgaatctaaagtgaatatattgttgacagcatatccttggattatgtttttaaatacatcttgtctgtctcttc-cattttttaaatgaatagactatttttcagaag----ctttaggttcacaaaaaaattgaatggaaggtgtagaaatctcacatgtaaccccttttactctctcatccag--
i macNem1.NW_012011356v1   C 0 C 0
s colAng1.NW_012115566v1     2191189 394 -   3067355 tctgctgcaaggtgcatacatacttataattgatgtatcttcttgatggaccagtgatttcatcatcataaattgtccttttttgtctccagtaataatccttgtctttttgttgatattgtgtaatatcagtatag----ccattagcactctatcgtggttactctttgaatggaata-cctttttcatcctttcagtttcaatcgatttgcgtttttgaatctaaagtgaatatattgttgacagcgtatccttggattatgtttttaaatacatcttgtctgtctcttc-catttTTTaaatgaatagactatttttcagaag----ctttcggtttacaaaacaattgaatggaaggtgtagaaatctcacatgtaaccccttttactctctcatccag--
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1736197 389 -   2232465 tttgttgctaggtgcatgaaaatttataatagttatatctccttgatggattaactattttatcatttcaaattgtccttcttatcctggggtaataattcttatctttttgttggtattccgtgatatcagtataa----ccaatagcattc--tcttggttaatctttgaacagaatatcttttctcatctttttggttttaacctatttgtgtttttgaatctgaagtgaattttttatatacagcaactagttggatcttttttt---atacattgtgttaatctctgctcctttgaaaaataaataaggtacattttagaagttttctttagatttacaaaaatattgaatacaaagtagagagttcccacataccacct------cccccccacccac--
i otoGar3.GL873742         I 383 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2276575 7149 +   2316924 I
e chlSab2.chr17             28554836 5244 -  71996105 I
e cerAty1.NW_012001495v1     2133811 5841 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T

a score=1368602.000000
s hg38.chr6_GL000254v2_alt    413828 719 +   4827813 tttcttttattattaacaacttgcattcatgtggtacatttgttataattgataagccaatattaatacattattagtaaccaaattccatagtttacattagggttgatggtgtgtgttttacattctatgggttttgacaaatgtttaataacatgtattcccccatt-cagtatcataaagaatggtttcactgccttaaaaattccctgttctccttccattcatcatttcctcccctcc----tccccgggagcccctgacaaccactga-ttttttattgtttccataactgtgctttttccagaatatcatacaattgaaatcatatataatgtagacttttctgactggcttctttgacttagtaatatgcatttaaatttcttccaggtc-----tgggctttacaactcattttttataattgaataatattccattctatgaatgtaccacagtctgcttattcattcatttattaaaggactttttt-------------tt----------------------tttttttgcttccaagctttggaaattaggaataaagctactgcaaacatttgtgtacaggttctgtgtggacataacgtttcagattatttgggttaataccaggacacgtgagtgctggattctatggttaagat--gtttagtgttgtatgaaactgtccagttgtcctctagagtggttgtacacttttggatttctgtaatcagtgaatgagagttcctgttattt
s panTro5.chr6              29388449 716 + 175400573 tttcttttattattaacaacttgcattcatgtggtacatttgttataattgataagccaatattaatacgttattagtaaccaaattccatagtttacattagggttgatggtgtgtgttttacattctatgggttttgacaaatgtttaataacatgtattcccccatt-cagtatcataaagaatggtttccctgccttaaaaactccctgttctccttccattcatcatttcctcccctcc----tccctgggagcccctgacaaccactga-ttttttattgtttccataactgtgctttttccagaatatcatacaattgaaatcatatataatgtagacttttctgactggcttctttgacttagtaatatgcatttaaatttcttccaggtc-----ttggctttacaactcattttttataattgaataatattccattctgttaatgtactacagtctgcttattcattcatttattaaaggac---ttt-------------tt----------------------tttttttgcttccaagctttggaaattaggaataaagctactgcaaacatttgtgtacaggttccgtgtggacataacgtttcagattatttgggttaataccaggacacgtgagtgctggattctatggttgagag--gtttagtgttgtatgaaactgtccagttgtcctctagagtggttgtacacttttggatttctgtaatcagtgaatgagagttcctgttattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29634148 715 + 173848474 tttcttttattattaacaacttgcattcatgtggtacatttgttataattgataagccaatattaatacgttattagtaaccaaattccatagtttacattagggttgatggtgtgtgttttacattctatgggttttgacaaatgtttaataacatgtattcccccatt-cagtatcataaagaatggtttccctgccttaaaaactccctgttctccttccattcatcatttcctcccctcc----tccctgggagcccctgacaaccactga-ttttttattgtttccataactgtgctttttccagaatatcatacaattgaaatcatatataatgtagacttttctgactggcttctttgacttagtaatatgcatttaaatttcttccaggtc-----ttggctttacagctcattttttataattgaataatattccattctgttaatgtactacagtctgcttattcattcatttattaaaggac----tt-------------tt----------------------tttttttgcttccaagctttggaaattaggaataaagctactgcaaacatttgtgtacaggttccgtgtggacataacgtttcagattatttgggttaataccaggacacgtgagtgctggattctatggttgagag--gtttagtgttgtatgaaactgtccagttgtcctctagagtggttgtacacttttggatttctgtaatcagtgaatgagagttcctgttattt
i panPan2.chr6             C 0 C 0
s rheMac8.chr4              29670714 743 + 172585720 tttcttttattattaacaacttgtattagtgtggtacatttgttataattgataagccaatattaatatattattagtaacaaaattccatagtttgcattagagttgatgctgtatgttgtacattctatgggttttgacaaatgtttaataacatgta-tcctccatt-cagtatcataaagaagagtttcactgccttaaaaattccctgtgctccatccattca--------tcctctcc----tcccttggagcccctggcaaccactga-tttttta---tttccataactgtgctttttccagaatatcatataattgaaatcatataagatgtggccttttctgattggcttctttgatttagtaatatgcatttaagttacttccaggtctttcattggcttgatagctcctttcttataaccgaataatattccattctattcatgtactatagtctgcttattcattcactgat----ggacacttttgtatgtgcgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctaaactttagcaattcagaataaagctactgtaaacatttgtgtatgggttctgtatggacataaagtttcaagccatttgggtcaataccaagatgcatgaatgctggattgtatggtaaaaat--gtttagtcctgtatgaaacggcccaattgtcttacagagtggttgtacacattttagtttctgtaaacaatgaaagagagttcctgttgttt
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              29333367 742 - 170955103 tttcttttattattaacaacttgtattagtgtggtacatttgttataattgataagccaatattaatatattattagtaacaaaattccatagtttgcattagagttgatgctgtatgttgtacattctatgggttttgacaaatgtttaataacatgta-tcctccatt-cagtatcataaagaatagtttcactgccttaaaaattccctgtgctccatccattca--------tcctctcc----tcccttggagcccctggcaaccactga-ttttttattgtttccataactgtgctttttccagaatatcatataattgaaatcatataagatgtggccttttctgattggcttctttgatttagtaatatgcatttaagttacttccaggtctttcattggcttgatagctcctttcttataaccgaataatattccattctattcatgtactatagtctgcttattcattcactgat----ggacacttttgtatgtgcgtgtgtt----tgtgtgtgtgtgtgtgtgtgtgtgtgtgtctaaactttagcaattcagaataaagctactgtaaacatttgtgtatgggttctgtatggacataaagtttcaagccatttgggtcaataccaagatgcatgaatgctggattgtatggtaaaaat--gtttagtcctgtatgaaacggcccaattgtcttacagagtggttgtacacattttagtttctgtaaacaatgaaagagagttcctgttgttt
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     2341468 734 -   2996164 tttcttttattattaacaacttgtattagtgtggtacatttgttataattgataagccaatattaatatattattagtaacaaaattccgtagtttgcattagagttgatgctgtatgttgtacattctatgggttttgacaaatgtttaataacatgta-tcctccatt-cagtatcataaagaatagtttcactgccttaaaaattccctgtgctccatccattca--------tcctctcc----tcccttggagcccctggcaaccactga-ttttttattgtttccataactgtgctttttccagaatatcatataattgaaatcatataagatgtggccttttctgattggcttctttgatttagtaatatgcatttaagttacttccaggtctttcattggcttgatagctcctttcttataaccaaataatattccattctattcatgtactatagtctgcttattcattcactgat----ggacacttttgtatgtgcgtgtgtt------------tgtgtgtgtgtgtgtgtgtgtctaaactttagcaattcagaataaagctactgtaaacatttgtgtatgggttctgtatggacataaagtttcaagccatttgggtcaataccaagacgcatgaatgctggattgtatggtaaaaat--gtttagtcctgtatgaaacggcccaattgtcttacagagtggttgtacacattttagtttctgtaaacaatgaaagagagttcctgttgttt
i macNem1.NW_012011356v1   C 0 I 1
s colAng1.NW_012115566v1     2191583 725 -   3067355 tttcttttattattaacaacttgcattagtgtggtacatttgttataattgataagccaatattaatacattattagcaacaaaattccatagtttacattagagttgatactgtatgttttacattctattggttttgacaaatgtttaataacatgta-tcctccatt-cagtatcataaagaagagtttcactgccttaaaaattccctgtgctccatccattca--------ttctctcc----ttccttggagcccctggcaaccactgatttttttattgtttccataactgtgctttttccagaatatcatacaattgaaatcatataagatgtagccttttctgattggcttctttgatttagtaatatgcatttaagttacttccaggtctttcattggcttgatagctcctttcttataaccgaataatattccattctattaatgtactgcagtctgcttattcattcactgat----ggactcttttgtgtgtgtgtgtgtt----------------------tgtgtgtgtgtctaaactttagcaattcagaataaagctactgtaaacatttgtgtatgggttctgtatggacataaagtttcagaccatttgggtcaataccaagacgcatgattgctggattgtatggtaaaaat--gtttagtcctgtatgaaatggcccaattgtcttacagagtggttgtacacattttaatttctgtaaacaatgaaagagagttcctgttgttt
i colAng1.NW_012115566v1   C 0 I 1
s otoGar3.GL873742           1736586 686 -   2232465 tgtctcctgttactaacatcttgaattagtgtggcacatttattacaattcatgaggcaatgttaatgcattattattaactaaaatccataatttacattaaggttcactctttctgttgtacattctagagg-tttaacaaatgtattatgatgtata-ttctccatgatagtatcatatggaatagcttcaccatcttaaaaatctcctgtgcttctcctgttca--------tcttctccgtcttctccctgatcccttggca------ga-tactttatt-tctccata-----gctttttccagaatatgatacagttgaaatcctgtatgatgtggtcttttctgattgccttttttcacttaattatacatctttaatctccttctatgtcttttcttggcttgatggc----ttcttataactgaataatattcaattatttggatgtgccacagtgtatttattcattctcttattgaagaacactttt-------------tt----------------------tttttct---tccaaactttggcaattaggaataaaacaaatgtaaacgttgctgtacaagtttcatgtagatataagctttcaaattaatcaggc---------------tgattgatggattatatggtaagaatacatttagttttgtcagaaactgccaaattgtcctccagagtggctataccattttgcatgcttacaagcaa-ggatgagagttcctgttgttc
i otoGar3.GL873742         C 0 I 236
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2276575 7149 +   2316924 I
e chlSab2.chr17             28554836 5244 -  71996105 I
e cerAty1.NW_012001495v1     2133811 5841 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T
e gorGor5.CYUI01015250v1     5430964   0 +   6154872 C

a score=665259.000000
s hg38.chr6_GL000254v2_alt    414547 329 +   4827813 atctctttgtcaacatctgatgttttcagtggtttgCtatggttgataatgtctcagatttctttaggctgttttatttttcttcattct-tttttctttttattactctgactagataatctcaattgacctatcttgtagtttgttgattcttccttctgcttgttaaaatctggtgttcaggtcttctgctgcattttttatttccatcactgtactttttcatctctagaatttgacttggttctttaacaacaaataatgtctatctctttaataattttctctatttagtgagaaatagttgtcatatcttcctttagttcttt
s panTro5.chr6              29389165 329 + 175400573 atctctttgtcaacatctgatgttttcagtggtttgCtatggttgataatgtctcagatttctttaggcggttttatttttcttcattct-tttttctttttattactctgactagataatctcaattgacctatcttgtagtttgttgattcttccttctgcttgttaaaatctggtgttcaggtcttctgctgcattttttatttccatcactgtactttttcatctctagaatttgacttggttctttaacaacaaataatgtctatctctttactaattttctctatttagtgagaaatagttgtcatatcttcctttagttcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29634863 327 + 173848474 atctctttgtcaacatctgatgttttcagtggtttgCtatggttgataatgtctcagatttctttaggctgtttta-ttttcttcattc--tttttctttttattactctgactagataatctcaattgacctatcttgtagtttgttgattcttccttctgcttgttaaaatctggtgttcaggtcttctgctgcattttttatttccatcactgtactttttcatctctagaatttgacttggttctttaacaacaaataatgtctatctctttactaattttctctatttagtgagaaatagttgtcatatcttcctttagttcttt
i panPan2.chr6             C 0 C 0
s rheMac8.chr4              29671458 330 + 172585720 acctctttgccaatgtctgatattttcagtggtttgCTATGACtgatgatgtcccagatttttttaggctcttttatttttctttgttctgtttttctttgtattactctgactagataatctcaactgacctgtcttgtagtttgttgattttttcttctgcttgttaaaatccggtgttaaggtcttctgctgaattttttatttccgtcactgtattttttcatcgctagaatttgacttggttctttaacaacaaataatgcctatctctttattaattttctctgtttagtgagaaatagttgtcatatcttgctttagttcttt
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              29334110 330 - 170955103 acctctttgccaatgtctgatattttcagtggtttgCtatgactgatgatgtcccagatttttttaggctcttttatttttctttgttctgtttttctttgtattactctgactagataatctcaactgacctgtcttgtagtttgttgattttttcttctgcttgttaaaatccggtgttcaggtcttctgctgaattttttatttccgtcactgtattttttcatcgctagaatttgacttggttctttaacaacaaataatgcctatctctttattaattttctctgtttagtgagaaatagttgtcatatcttgctttagttcttt
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     2342203 330 -   2996164 acctctttgccaatgtctgatattttcagtggtttgctatgactgatgatgtcccagatttttttaggctcttttatttttctttgttctgtttttctttgtattactctgactagataatctcaactgacctgtcttgtagtttgttgattttttcttctgcttgttaaaatccggtgttcaggtcttctgctgaattttttatttccgtcactgtattttttcatcgctagaatttgacttggttctttaacaacaaataatgcctatctctttattaattttctctgtttagtgagaaatagttgtcatatcttgctttagttcttt
i macNem1.NW_012011356v1   I 1 T 76545
s colAng1.NW_012115566v1     2192309 326 -   3067355 acctctttgccaatatctgatattttcagtggtttgCtatgactgaggatgtcccagatttctttaggctcttttatttttctttgttctgtttttctttgtattactctgactagataatctcaactgacctgtcttgtagtttgttgattctttcttctgcttgttaaaatctggtgttcaggtcttctgctgaattttttatttccgtcactgtatttcttcatctctagaatttgacttggttcttgaacaacaaatgatgcctg----tttattaattttctctgtttagtgagaaatagttgtcatatcttgctttagttcttt
i colAng1.NW_012115566v1   I 1 C 0
s otoGar3.GL873742           1737508 303 -   2232465 atattcttgccaacatttggtgttgtcagtatttttgtatgcttgataatgtaccacatttctttaggaccttctatttttctttatt---tttttcctcatattattctgactagataatctcaattgatgtatcattaagtgtgctgatgttttcttcggcttgttcaaatct--------ggttctttgttcatttttaaatttcagttattacagtttttgattttagaattttgattgggtattttaaaaa------atattt-tctccttattaatattctatattttgtaaaatatag---------cttcctttagtttttt
i otoGar3.GL873742         I 236 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2276575 7149 +   2316924 I
e chlSab2.chr17             28554836 5244 -  71996105 I
e cerAty1.NW_012001495v1     2133811 5841 -   2157725 I
e nomLeu3.chr1a             74388707 9496 + 122973662 T
e gorGor5.CYUI01015250v1     5430964   0 +   6154872 C

a score=13044.000000
s hg38.chr6_GL000254v2_alt    414876 13 +   4827813 aaacatggtttat
s panTro5.chr6              29389494 13 + 175400573 aaacatggtttat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29635190 13 + 173848474 aaacatggtttat
i panPan2.chr6             C 0 C 0
s rheMac8.chr4              29671788 13 + 172585720 aaacatggtttct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29334440 13 - 170955103 aaacatggtttct
i macFas5.chr4             C 0 C 0
s colAng1.NW_012115566v1     2192635 13 -   3067355 aaacatggtttct
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1737811  2 -   2232465 -aa----------
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2276575 7149 +   2316924 I
e chlSab2.chr17             28554836 5244 -  71996105 I
e cerAty1.NW_012001495v1     2133811 5841 -   2157725 I
e macNem1.NW_012011356v1     2342533 76545 -   2996164 T
e nomLeu3.chr1a             74388707 9496 + 122973662 T
e gorGor5.CYUI01015250v1     5430964  0 +   6154872 C

a score=322863.000000
s hg38.chr6_GL000254v2_alt    414889 169 +   4827813 ttcagctctttgaccctatttttaaagtagctgatgtaagcctttgtccaacaagttcaacacctagatttgctgctattgattgc-atttccccctccttttatgacccatacttcctgtgtctttcttcacttgtattataattttatgttgaaaactagatacttCA
s panTro5.chr6              29389507 169 + 175400573 ttcagctctttgaccctatttttaaagtagctgatctaagcctttgtccaacaagttcaacacctagatttgctactattgattgc-atttccccctccttttatgacccatacttcctgtgtctttcttcacttgtattataattttatgttgaaaactagatacttCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29635203 169 + 173848474 ttcagctctttgaccctatttttaaagtagctgatctaagcctttgtccaacaagttcaacacctagatttgctactattgattgc-atttccccctccttttatgacccatacttcctgtgtctttcttcacttgtattataattttatgttgaaaactagatacttCA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74379211 169 + 122973662 tccagtttcttgaccatatttttaaagaagctgattaaagcctttgtccaacaagttcaacacctagacttgctactattgattgc-atttccccctccttttatgacttctactttctgtgtttttctttacctgtatcataattttatgttgaaaaccaggtatttCA
i nomLeu3.chr1a            T 9496 C 0
s rheMac8.chr4              29671801 168 + 172585720 ttcagttctttgaccata-ttttaaagaagctgattaaagcctttgtccaacaagttcaacacctagacttgctactactgattgc-atttccccctccttttatgacttctactttctgtgtttttctttacctgtatcagaattttatgttgaaaactagatatttCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29334453 168 - 170955103 ttcagttctttgaccata-ttttaaagaagctgattaaagcctttgtccaacaagttcaacacctagacttgctactactgattgc-atttccccctccttttatgacttctactttctgtgtttttctttacctgtatcagaattttatgttgaaaactagatatttca
i macFas5.chr4             C 0 C 0
s colAng1.NW_012115566v1     2192648 164 -   3067355 ttcagctctttgaccata-ttttaaagaagctgattaaagcctttgtccaacaagttc-acacctagacttgctactactgattgc-atttctccctccttttatgactt---ctttctgtgtttttctttacctgtatcataattttatgttgaaaactagatatttCA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1737813 153 -   2232465 -----ctcttt----atatttttaaaggagctaattaaagttgtcatctagaaagtttaatatctagacttccatctatttattgcaatttctccttctttgtatggcacatactt--------ttttgtttcttgtgtcgcgattctattttgaagacaagacatttta
i otoGar3.GL873742         C 0 T 41203
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2276575 7149 +   2316924 I
e chlSab2.chr17             28554836 5244 -  71996105 I
e cerAty1.NW_012001495v1     2133811 5841 -   2157725 I
e macNem1.NW_012011356v1     2342533 76545 -   2996164 T
e gorGor5.CYUI01015250v1     5430964   0 +   6154872 C

a score=3714127.000000
s hg38.chr6_GL000254v2_alt    415058 2319 +   4827813 TTTCATTTAtttttatttttaaaacttttatcttaagttcaaaggtacatacgcaggt------catggg----------------ggtttgttgtagagattatttcatcacccag----gtattaagcatagcatccattagttatttttcctgatcctctctgtcctcccatcctccaccctccaccaggccacagtatgtattgtttccctctatgtgtccatatgttttcatcatttagctcccagttacaagtgagaacatgtggtattcaattttctgttactgtgttagtttgctaaggataatggcctccaactccatctatgttcctgaaagggacatgatctcgttcttttttatggctgcatagtattccacggtgtgtatgtaccacattttctttatcgagtctatcattgatgggcatttaggttgattcca----------------------tgtctttgctattgtgagtagtgctccaatgaacatatgtatgcatgtgttttcacaattgaacaacttatattcctttgggtgcttacccagtaatgagattggtgggtcaaatggtattactgtctttagaactttgaggaattgccacaatgccttccacaatggttgaactaatttacactcccaccaacagtgtatacatgtttgtttttctccataaccttcccagcatctgttcttctctgactttttaataatagccattctgactggtgtgataaggtatctccttgtggttttgatttgcatttctctaatgatcagtgatgttgagcttttttcatatgattgttggctgcatgtatgtcttcttttgaaaactgtcggctcatgttctttgctcactttttaatggggttgtttttctttcttataaatttggaaaactaaatattttaaatactagaaatggcaactgtggaaaccagattctccctgtctcactagaatttgttgttgctgcttattaatgtagttgttgctgcttattaatgtagttgttgcttgcttgtttagtgaatactcccaaataattctctacagtctgccttctttgtggtgtagggccattaaaatctgtactcaggtagtctagtggccagcaaataattggacagaaatttctttcaatgcctgggactaataaatcttccagtttctgtcaaagacctctatgttcatattgaggcatgactctgacacctagtcaggcagttcacatctctaccttagcctccacttacttcttcctgaaatactgaaggtcagccagagacaagagtttagaatcttctcagttcttgcttgagcatttatagagtcctgaatctgaacacagccatatgcatatacatgaaattcctggcatatggcaaagattttcaaaatccctatagacatcccattccttaca----ttttttaagctcttttattgctttatggtctgccccaacttttatcaattgctttagtcagaagtgaagttaaagcagtcacttgaaattattttcaacaaatacctgctgagaaaatgctttttgcattggtcgaggtctgagtcatggtcaaatacagacagactcatgaatgaagtcttccaaaaagccccagccaggtaaattaaagacaTATCTTTATAAGTTTATACATATATCTTTATAAAAGGTATATAAAATATTTCAC-----TTTTCATTCTTTTTTGGTA----TTTTGGTATTTCAGGAGATTTGATTTTTTTTGTTTTGATGCTTATATTTACACATTAGTCCCTCTTT-TAGGCATCATTGATTGGTTTTCTAAAATGAGCACTATATTTATTTATTTATTTAAtttttcaatatattatagttgtacatatttt-ggggtagatgtgttttcttacacatataca---------------------------atgtgtaatga-ttaaatcagagtgattataatatctatcaccacaaaca-----ctttgtgttgtgaaaattacaatttttttctagctattttgaaatatacaatatatgttatgctaatattaataaatgttagttgtattttctctactgtattatcaaatactaaaaattattccttgtatctaactctat-ttttgtatccactaacaaactctttttcatctgtttttccttgcatccatttgcagactctgataagcaccattctacccttgaccttcataagatccactttttttagctcctgcataccagtgagaacatgatatatttgtatttctgttcatggtttatttcacttaacataatgacttccaattttatccatgttgctactaatgaaaggatttca-ttattttttatggttgaatgatattccatcatgtatatatat
s panTro5.chr6              29389676 2309 + 175400573 TTTCAtttatttttat------aacttttatcttaagttcaaaggtacatacgcaggt------catggg----------------ggtttgttgtagagattatttcatcacccag----gtattaagcatagcatccattagttatttttcctgatcctctctgtcctcccatcctccaccctccaccaggccacagtatgtattgtttccctctatgtgtccatatgttttcatcatttagctcccagttacaagtgagaacatgtggtattcgattttctgttactgtgttagtttgctaaggataatggcctccaactccatctatgttcctgaaagggacatgatctcgttcttttttatggctgcatagtattccacggtgtgtatgtaccacattttctttatcgagtgtatcattgatgggcatttaggttgattcca----------------------tgtctttgctattgtgagtagtgctccaatgaacatatgtatgcatgtgttttcacaattgaacaacttatattcctttgggtgcttacccagtaacgagattggtgggtcaaatggcgttactgtctttagaactttgaggaattgccacaatgccttccacaatggttgaactaatttacactcccaccaacagtgtatacatgtttgtttttctccataaccttcccagcatctgttcttctctgactttttaataatagccattctgactggtgtgataaggtatctccttgtggttttgatttgcacttctctaatgatcagtgatgttgagcttttttcatatgattgttggctgcatgtatgtcttcttttgaaaactgtcggctcatgttctttgctcactttttaatggggttgtttttctttcttgtaaatttggaaaactaaatattttaaatactagaaatggcaactgtggaaaccagattctccctgtctcactagaatttgttgttgctgcttattaatgtagttgttgctgcttattaatgtagttgttgcttgcttgtttagtgaatactcccaaataattctctaaagtctgccttctttgtggtgtagggccattaaaatctgtactcaagtagtctagtggccagcaaataattggacagaaatttctttcaatgcctgggactaataaatcttccagtttctgtcaaagacctctatgttcatattgaggcatgactctgacacctagtcaggcagttcacatctctaccttagcctccacttacttcttcctgaaatactgaaggtcagccagagacaagagtttagaatcttctcagttcttgcttgagcatttatagagtcctgaatctgaacacagccatatgcatatatatgaaattcctggcatatggcaaagattttcaaaatccctatagacatcccattccttaca----ttttttaagctcttttattgctttatggtctgccccaacttttatcaattgctttagtcagaagtgaagttaaagcagtcacttgaaattattttcaacaaatacctgctgagaaaatgctttttgcattggtcgaggtctgagtcatggtcaaatacagacagactcatgaatgaagtcttccaaaaagccccagccaggtaaattaaagacaTATCTTTATAAGTTTATACATATATCTTTATAAAAGGTATATAAAATATTTCAC-----TTTTCATTCTTTTTTGGTA----TTTTGGTATTTCAGGAGATTGGATTTTTTTTGTTTTGATGCTTATATTTACACCTTAGTCCCTCTTT-TAGGCATCATTGATTGGTTTTCTAAAATGAGCACTATATTTATTTATTTATTTAAtttttcgatatattatagttgtacatattttgggggtagatgtgttttcttacacatataca---------------------------atgtgtaatga-ttaaatcagagtgattataatatctatcaccacaaata-----ctttgtgttgtgaaaattacaatttttttctagctattttgaaatatacaatatatgttatgctaatattaataaatgttagttgtattttctctactgtattatcaaatactagaaattattccttgtatctaactctat-ttttgtacccactaacaaattctttttcatctgtttttccttgcatccatttgcagactctgataagcaccattctacccttgaccttcataagatccactttttttagctcctgcataccagtgagaacatgatatatttgtatttctgttcatggcttatttcact-----taatgacttccaattttatccatgttgctactaatgaaaggatttca-ttattttttatggttgaatgatattccatcatgtatatatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29635372 2310 + 173848474 TTTCAtttatttttat------aacttttatcttaagttcaaaggtacatacgcaggt------catggg----------------ggtttgttgtagagattatttcatcacccag----gtattaagcatagcatccattagttatttttcctgatcctctctgtcctcccatcctccaccctccaccaggccacagtatgtattgtttccctctatgtgtccatatgttttcatcatttagctcccagttacaagtgagaacatgtggtattcgattttctgttactgtgttagtttgctaaggataatggcctccaactccatctatgttcctgaaagggacatgatctcgttcttttttatggctgcatagtattccacggtgtgtatgtaccacattttctttatcgagtgtatcattgatgggcatttaggttgattcca----------------------tgtctttgctattgtgagtagtgctccaatgaacatatgtatgcatgtgttttcacaattgaacaacttatattcctttgggtgcttacccagtaacgagattggtgggtcaaatggcgttactgtctttagaactttgaggaattgccacaatgccttccacaatggttgaactaatttacactcccaccaacagtgtatacatgtttgtttttctccataaccttcccagcatctgttcttctctgactttttaataatagccattctgactggtgtgataaggtatctccttgtggttttgatttgcacttctctaatgatcagtgatgttgagcttttttcatatgattgttggctgcatgtatgtcttcttttgaaaactgtcggctcatgttctttgctcactttttaatggggttgtttttctttcttgtaaatttggaaaactaaatattttaaatactagaaatggcaactgtggaaaccagattctccctgtctcactagaatttgttgttgctgcttattaatgtagttgttgctgcttattaatgtagttgttgcttgcttgtttagtgaatactcccaaataattctctaaagtctgccttctttgtggtgtagggccattaaaatctgtactcaagtagtctagtggccagcaaataattggacagaaatttctttcaatgcctgggactaataaatcttccagtttctgtcaaagacctctatgttcatattgaggcatgactctgacacctagtcaggcagttcacatctctaccttagcctccacttacttcttcctgaaatactgaaggtcagccagagacaagagtttagaatcttctcagttcttgcttgagcatttatagagtcctgaatctgaacacagccatatgcatatatatgaaattcctggcatatggcaaagattttcaaaatccctatagacatcccattccttaca----ttttttaagctcttttattgctttatggtctgccccaacttttatcaattgctttagtcagaagtgaagttaaagcagtcacttgaaattattttcaacaaatacctgctgagaaaatgctttttgcattggtcgaggtctgagtcatggtcaaatacagacagactcatgaatgaagtcttccaaaaagccccagccaggtaaattaaagacaTATCTTTATAAGTTTATACATATATCTTTATAAAAGGTATATAAAATATTTCAC-----TTTTCATTCTTTTTTGGTA----TTTTGGTATTTCAGGAGATTGGATTTTTTTTGTTTTGATGCTTATATTTACACATTAGTCCCTCTTT-TAGGCATCATTGATTGGTTTTCTAAAATGAGCACTATATTTATTTATTTATTTAAtttttcgatatattatagttgtacatattttgggggtagatgtgttttcttacacatataca---------------------------atgtgtaatga-ttaaatcagagtgattataatatctatcaccacaaata-----ctttgtgttatgaaaattacaatttttttctagctattttgaaatatacaatatatgttatgctaatattaataaatgttagttgtattttctctactgtattatcaaatactagaaattattccttgtatctaactctat-ttttgtacccactaacaaattctttttcatctgtttttccttgcatccatttgcagactctgataagcaccattctacccttgaccttcataagatccactttttttagctcctgcataccagtgagaacatgatatatttgtatttctgttcatggcttatttcact-----taatgacttccaattttatccatgttgctactaatgaaaggatttcatttattttttatggttgaatgatattccatcatgtatatatat
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74379380 2295 + 122973662 TTTTATTTATttttatttttt-aatttttattttaagttcaaaggtacatatgcaggtttgttacataggtaaacttatgtcatgtgatttcttttagagattatttcatcacccagtgatgggttaagcctagtactcattagttatttttcctgatcctcttcatcttcctaccttccaccctctaccaggctacagtatgtattattctcctttatatgtccatattttatcatcatttagctcccacttataagcgagaacatgtggtatttaattttctgtttctgtgtcagtttgctaaggataatggcctccaactccatctatgttcctgcaaagaacatgatctcatccttttatatggctgcatagtatttcatggtgtatatgtaccacattttctttatccagtctatcattgatgggcatttaagttgattccatgtctttgcta-ttttcaatagtgtctttgctattgtgagtagtgctccaataaactgaagcacgtgtgtgtttttataatagaataatttatattcctctaagtatataccaagtaatgtgattgctgggtcaaatggtatttctgtctttaggac--tgaggaattgccatgatgccttccccagtggttgaactaatttacactcccaccaacagtttataaatgtttgtttttctccataaccctgccagcatctattttt---tgactttttaataatagtcattctgactggtatgatatgctatctccctgtggttttgatctgcatttctctaatgatcagtgatgttgagtttttttcatatgaatgttggctgcatgtatgtcttcttttgaaaagt----gctcacgtcctttgctcactttttcatgg---cgtttttctttcttataaatttggaaaactagatattttaaatactagatatggcaaatgtggaaaccagattctccctgtctcactagaattt----------------------gttgttgctgcttattattgtagttgttgcttgcttgtgtagtgaatactctcaaataattctctaaagtctgccttctttgtagtgtagggccattaaagtctgtactcaggtagcttagcagccagcaaataattggacagaaatttctttcaatgcctgggactaatacattttccagttgttgtcaaagacctctatgtgcatgttgaggcatgactttgacacccagtcaggcagtttacatctctaccttagcctccacttactgcctcctgaaatactgaaggtcagccagagatgagagcttaggatcttctcagttcttgcttgagcattcatagagccctgaatctgcacacagctctatgcatgcatgtgaatttcctcacatatggcaaagattttcaaaatccctatggacatgtcattctttagatttgtttttttagctctttgattaatttatggtttgccccatccatggtccattgctttagtaaaaagtgaagttaaagcagtcacttgaaattattttcaacaaatgcctgctgggataatgctttttgcactggtgaaggtctgagtcagattcaaatacaggtagcctcatgaatgtggtcttccaaaaagccccagttaggtaaattaatgccaTACCTCTCTAAATTTATACATACATATTTATAAAAGGTATAAAAAGTATTTCAC-----GTTTC------TTTTTATT----TTTTGGTATTTCAGAAGATTTGATTTTTTTTGGTTTGATGCTTGTATTTACATATTAGTCCCTTTGTATAGGCATC----ACTAGTTTTCTAAAATGAGCAC------------TCTATTTAAttttttgatatattatagttgtacatatttt-ggggta-aggtgttctgatacacatataca---------------------------atgtgtaatgatttaaattacagtaattgtgatatctaccactaaaaatatttttctttctgttgtg-aaattataatttttttctagctattttgaaatacacaata-----------------aacaattgttagctgtaat-----tattgtattatcaaatactagaaattattccttctattatagtgagtattttgtactcactaacaaacttcttttcatctttctttccttgtatccattcccagactctgataagcaccattctactctctaccttcataggatccac-ttttttagctctcacataccagtaagaacgtgatatattcgtatttctgttcatggcttatttcacttaacataatgactt-caattctatccatgttgctgcaaatggaaggatttca-ttcttttttatggctgaatggtattccatcacatatatatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29671969 2346 + 172585720 ----------Ttttattttttaaatttttattttaagttcaaaagtacacatgcaggtttgttacataggtaaacttgtgtcatggggctttttttagagattatttcatcacccag----ctattaagcctagtacccattagttatttttcccgatcctcttcatcctcccaccctccaccctctaccaggctacagtatgtattgttcccctttatgtgtccgtattttctcatcatttagctcccacttgtaagtgagaacatgtggtatttgattttctgtttctgtatccatttgctaaggataatcacctccaactccgtctatgttcctgcaaagaacatgatctcattcttttatatgactgcatagtattccatggtatatatctaccacattttctttatccagtctatcattgatgggcatttaagttgattccatgtctttgctatttttcaatagtatctttgctattgtgagtagtgctccaatgaacttaagcatgtgtgtgtgtttataatagaataatttctatccctctgggtatacaccaagtaatgcgattgctgggtcaaatagtatttctgtctttaagac--tgaggaattcccacaatgccttcc-caatggttgaactaatttacactcccaccaacagtttataaatgtttgtttttctccataaccttgccagcatctgttttt---tgactttttaataatagtcattctgacgggtatgatatgctatctccttgtggttttgatctgcatttctctaatgatcagtgatgttgaatttttttcatatgattgttggttgcatgtatgtcctcttttgaaaagtgtctgctcatgtccttcgctcactttttcatggggttgtttttctttcttgtaaatttggaaaactagatactttaaatactagaaatggcaactgtggaaaccagattctccctgtctcattagaattt----------------------gttcttgctgcttattattgtagttgttgcttgcttgtttagtgaatactcccaaataattctctaaagtctgccttctttgtggtgtagggccattaaagtctgtactcaggtagcttagcggccagcaaataattggacagaaatttctttcaatgcctgggactaataaattttccagtttttgtcaaagacctctatgtgcatgttgatgcatgacttcaacacccagtcaggcagtttacatctctaccttagcctccacttatttcctcctgaaatactgaaggtcagccagagatgagagcttaggatcttctcacttcttgcttgagcattcatagagccctgaatctgcacacagccatatgcatgcatattaatttccttgcatatggcaaagattttcaaaatccctctggccatgtcattccttagatttgtgtttttagttttttgattaatttgtggtttgcctcattggtggtacattgctttagtaagaagtgaaattaaagcagtcacttgaaattattttcaacaaacgcctgctgggaaaatgctttttgcgctggtgaaggtctgagttaggttcaaatacagttagcctcataaatgtggtcttccaaaaagccccagtcaggtaaattaatgacaTACCTTTCtaaatgtatacatatatatttataaaaggtatataaaatatttcacatttatttttatTCTTTTTTGGTATTTCTTTTGGTATTTCAGAATATTTGATTTTTTTTGTTTTGATGCTTATATTTACATATTAGTGCCTTTTTATAGACATC----ACTGGTTTTCTAAGATGAGCAC----TCTATTTATTTATTTAAttttttgatatattatagttgtacatattttgggggtagttgtgttttgatacacatatgcacagttgccgtgtgttttgatacacattatgtataatga-ctaaatcagagtaattgtgatacccatcattacaaatacttttctttgtgttgtgaaaattataatttttttctagctattttgaaatatacaaca-----------------aacaattgttagctataatttctctgctgtataataaaatactagaaatcattccttctatctaactgtat-atttgtactcactaacaaactccttttcctctttttttccttgtatccattcccagactctgataagcaccattctactctctacctttataagatccac-tattttagctctcacataccagtaagaacatgatatatttgtatttctgttcatggcttatttcacttaacataatgacttccaattttatccatgttgctacaaatgaaagcatttca-ttctttttgatgactgaatggtatttcatcatatatacataT
i rheMac8.chr4             C 0 T 79614
s macFas5.chr4              29334621 2346 - 170955103 ----------ttTTAttttttaaatttttattttaagttcaaaagtacatatgcaggtttgttacataggtaaacttgtgtcatggggctttttttagagattatttcatcacctag----ctattaagcctagtacccattagttatttttcccgatcctcttcatcctcccaccctccaccctctaccaggctacagtatgtattgttcccctttatgtgtccgtattttctcatcatttagctcccacttgtaagtgagaacatgtggtatttgattttctgtttctgtatccatttgctaaggataatcacctccaactccgtctatgttcctgcaaagaacatgatctcattcttttttatgactgcatagtattccatggtgtatatctaccacattttctttatccagtctatcattgatgggcatttaagttgattccatgtctttgctatttttcaatagtatctttgctattgtgagtagtgctccaatgaacttaagcatgtgtgtgtgtttataatagaataatttctatccctctgggtatataccaagtaatgcgattgctgggtcaaatagtatttctgtctttaagac--tgaggaattcccacaatgccttcc-caatggttgaactaatttacactcccaccaacagtttataaatgtttgtttttctccataaccttgccagcatctgttttt---tgactttttaataatagtcattctgacgggtatgatatgctatctccttgtggttttgatctgcatttctctaatgatcagtgatgttgaatttttttcatatgattgttggttgcatgtatgtcctcttttgaaaagtgtctgctcatgtccttcgctcactttttcatggggttgtttttctttcttgtaaatttggaaaactagatactttaaatactagaaatggcaactgtggaaaccagattctccctgtctcattagaattt----------------------gttcttgctgcttattattgtagttgttgcttgcttgtttagtgaatactcccaaataattctctaaagtctgccttctttgtggtgtagggccattaaagtctgtactcaggtagcttagcggccagcaaataattggacagaaatttctttcaatgcctgggactaataaattttccagtttttgtcaaagacctctatgtgcatgttgatgcatgacttcaacacccagtcaggaagtttacatctctaccttagcctccacttatttcctcctgaaatactgaaggtcagccagagatgagagcttaggatcttctcacttcttgcttgagcattcatagagccctgaatctgcacacagccatatgcatgcatattaatttccttgcatatggcaaagattttcaaaatccctctggccatgtcattccttagatttgtgtttttagttttttgattaatttgtggtttgcctcattggtggtacattgctttagtaagaagtgaaattaaagcagtcacttgaaattattttcaacaaacgcctgctgggaaaatgctttttgcactggtgaaggtctgagttaggttcaaatacagttagcctcataaatgtggtcttccaaaaagccccagtcaggtaaattaatgacataccTTTCTAAATGTATACATATATATTTATAAAAGGTATATAAAATATttcacatttatttttattcttttttggtatttcttttggtatttcagaatatttgattttttttgttttgatgcttatatttacatattagtgcctttttatagacaTC----ACTGGTTTTCTAAGATGAGCAC----TCTATTTATTTATTTAATTTTttgatatattatagttgtacatattttgggggtagttgtgttttgatacacatatgcacagttgccgtgtgttttgatacacattatgtataatga-ttaaatcagagtaattgtgatacccatcattacaaatacttttctttgtgttgtgaaaagtataatttttttctagctattttgaaatatacaata-----------------aacaattgttagctataatttctctgctgtataataaaatactagaaatcattccttctatctaactgtat-atttgtactcactaacaaactccttttcctctttttttccttgtatccattcccagactctgataagcaccattctactctctacctttataagatccac-tattttagctctcacataccagtaagaacatgatatatttgtatttctgttcatggcttatttcacttaacataatgacttccaattttatccatgttgctacaaatgaaagcatttca-ttctttttgatgactgaatggtatttcatcatatatacatat
i macFas5.chr4             C 0 I 18
s colAng1.NW_012115566v1     2192812 2353 -   3067355 TTTTATTTAtttttatttttgaaatttttattttaagttcaaaagtacatatgcaggtttgttacataggtaaacttgtgtcatggggctttttttagagataatttcatcacccag----ctattaagcctagtacccattagttatttttcccgatcctcttcatcctcccaccctccaccctttaccaggctacagtatgtattgttcccctttatgtgtccatattttctcatcatttagctcccacttgtaagtgagaacatgtggtatttgatattctgtttctgtatccatttgctaaggataatcgcctccaactctgtctgtgttcctgcaaagaacatgatctcattcttttttatgactgcatagtattccatggtgtatatgtaccacattttctttatccagtctattattgatgggcatttaagttgattccatgtctttgcta-ttttcaatagtgtctttgctattgtgagtagtgctccaatgaacttaagcatgtgtgtgtgtttataatagaataatttgtatccctctgggtatataccaagtaatgggattgctgggtcaaatagtatttctgtctttaagac--tgaggaattcccacaatgccttcc-caatggttgaactaatttacactcccaccaacagtttataaatgtttgtttttctccataaccttgccagcgtctgttttt---tgactttttaataatagtcattctgactgatatgatatgctatctccttgtggttttgatctgcatttctctaatgatcagtgatgttgaatttttttcatatgattgttggctgcatgtatgtcctcttttgaaaagtgtctgttcatgtccttcactcactttttcatggggttgtttttctttcttgtaaatttggaaaactagatattttaaatactagaaatggcaactgtggaaaccaaattctccctgtctcactagaattt----------------------tttcttgctgcttattattgtagttgttgcttgcttgtttagtgaatactcccaaataattctctaaagttcgccttctttgtggtgtagggccattaaagtctgtactcaggtagcttagcggccagcaaataattggacagaaatttctttcaatgcctgggactaataaattttccagtttttgtcaaagacctctatgtgcatgttgaggcatgacttcaacacccagtcaggcagtttacatctctaccttagcctccacttatttcctcctgaaatactgaaggtcagccagagatgagagtttaggatcttcttacttcttgcttgagcattcatagagcactgaatctgcacacagccatatgcatgcatatgaatttccttgcttatggcaaagattttcaaaatccctatggccatgtcattccttagatttgtgtttttagttttttgattaatttgtggtttgccccattggtggttcattgctttagtaagaagtgaaattaaagcagtcacttgaaattattttcaacgaacgcctgctgggaaaacgctttttgtactggtgaaggtctgagttaggttcaaatacagttagcctcataaatgtggtcttccaaaaagccccagtcaggtaaattaatgacaTACCCTTCtaaatgtatacatatatatttataaaaggtatataaaatatttcacatttatttttatTCTTTTTTGGTATTTCTTTTGGTATTTCAGAATATTTGATTTTTTTTGTTTTGATGCTTATATTTACATATTAGTCCCTTTTTATAGGCATC----ACTGTTTTTCTAAGATGAGCAC----TC--TTTATTTATTTAAttttttgatatattatagttgtacatattttgggggtagttgtgttttgatacacatatgcacagttgccatgtgttttgatacacattatgtataatga-ttaaatcagagtaatagtgatacccatcattacaaatacttttctttgtgttgtgaaaattataatttttttctagctattttgaaatatacaaca-----------------aacaattgttagctgtaatttctctgctgtatcataaaatagtagaaatcattccttctatctaactgtat-ttttgtactcattaacaaactccttttcatctttttttccttgtatccattcccagactctgataagcaccattctactctctacctttataagatccac-tattttagctctcacataccagtaagaacatgatatatttgtatttctgttcatggcttatttcacttaacataatgacttccaattttatccatattgctacaaatgaaagcatttca-ttcttttttatgactgaatgatatttcatcatatatacatat
i colAng1.NW_012115566v1   C 0 N 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2276575 7149 +   2316924 I
e chlSab2.chr17             28554836 5244 -  71996105 I
e cerAty1.NW_012001495v1     2133811 5841 -   2157725 I
e macNem1.NW_012011356v1     2342533 76545 -   2996164 T
e gorGor5.CYUI01015250v1     5430964    0 +   6154872 C

a score=79797.000000
s hg38.chr6_GL000254v2_alt    417377 206 +   4827813 tacattttctttatccatcctt----------------ctcttgctagaca--------------------ctggtgttgca------------ttcTTTGTGTGTTTCTATAGGTGAAGTGAGGTTC-TTTTTTTCTTTCC------------------------------------------AATTTTTTTTTTGCTTTTTTTTA-------tttttaattttttt--attatactttaagttttagggtacatgtgcacaacgtatttcaggttcaagtggtacatgtgcaggtttgttacat
s panTro5.chr6              29391985 207 + 175400573 tacattttctttatccatcctt----------------ctcttgctagaca--------------------ctgatgttgca------------ttcTTTGTGTGTTTCTATAGGTGAAGTGAGGTTCTTTTTTTTCTTTCC------------------------------------------AATTTTTTTTTTTGCTTTTTTTA-------tttttaattttttt--attatactttaagttttagggtacatgtgcacaacgtatttcaggttcaagtggtacatgtgcaggtttgttacat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29637682 207 + 173848474 tatattttctttatccatcctt----------------ctcttgctagaca--------------------ctgatgttgca------------ttcTTTGTGTGTTTCTATAGGTGAAGTGAGGTTCTTTTTTTTCTTTCC------------------------------------------AATAATTTTTTTTGCTTTTTTAA-------tttttaattttttt--attatactttaagttttagggtacatgtgcacaacgtatttcaggttcaagtggtacatgtgcaggtttgttacat
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74381675 144 + 122973662 aacattttctttatccattctt----------------ctcttgctagaca--------------------cttaagttgca------------ttcTTTGTGTATCTTTGTAGGTGAAGTGAGTTTCTTTTTTTTttttcc------------------------------------------------------------------------tttccaactttt------------------------------------------ttttaggttcaaggggtacacgtgcaggtttgttacat
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29336985 276 - 170955103 AACATTTTCTTTTTCTTTTTTTAATTTaaagaggtatattctggccaaatataagtgatcatagcctggggcttggggtacagcctcaagaggcttcTTT---tgttttt---ggtctgggaaagtctttattttaccttcatgattgaaggatatttttgctagataaacttctatagggtcaaaggtttttgtttgctttccttcagcacttttttttctttttttaaattatattttatgttttagggtacatgtgcaca------------------------atgtgcaagtttgttacat
i macFas5.chr4             I 18 T 81325
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2276575 7149 +   2316924 I
e chlSab2.chr17             28554836 5244 -  71996105 I
e cerAty1.NW_012001495v1     2133811 5841 -   2157725 I
e macNem1.NW_012011356v1     2342533 76545 -   2996164 T
e rheMac8.chr4              29674315 79614 + 172585720 T
e gorGor5.CYUI01015250v1     5430964   0 +   6154872 C

a score=100801.000000
s hg38.chr6_GL000254v2_alt    417583 239 +   4827813 cagtaaattttttgttatgggggtttggtg-tacag--ataattttg--tcaccc--aggg---aattagc-att--atacccattaagtagcttttc--tttttttttaaactttaattttaggttcagggtacctgtgcaggtttgttatataggtaaattgtgtgtcacatgggtttggtgtacagattattttgtcacccatgtaataagtgtggtaaccaatgggttgg-ttttgatcctcacctccccc
s panTro5.chr6              29392192 241 + 175400573 cagtaaattttttgttatgggggtttggtg-tacag--ataattttg--tcaccc--aggg---aattagc-att--atacccattaggtagcttttcttttttttttttaactttaattttaggttcagggtacatgtgcaggtttgttatataggtaaattgtgtgtcacatgggtttggtgtacagattattttgtcacccatgtaataagtgtggtaaccaataggttgg-ttttgatcctcacctccccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29637889 248 + 173848474 cagtaaa-tttttgttatgggggtttggtgttacagtattaattttgtttcacccttagggtaaatttagctatttattacccattaggtagctttgc----ttttttttaac-ttaattttaggttcagggtacatgtgcaggtttgttatataggtaaattgtgtgtcacacgggtttggtgtacagattattttgtcacccatgtaataagtgtggtaaccaataggttgg-ttttgatcctcacctccccc
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74381819 237 + 122973662 gagtaaa-tttttgttatgggggtttggtg-tacag--ataattttg--ttgccc--aggt---aatcagc-ttt--atatccaataggtagcttttc--tttgttaaaaaactttgattttaggttcagggtacatgttcaggtttgttatataggtaaattgtgtgtcacaagggtatggtgtacagattattttgtcacccatgtaataagcatggtaaccga--ggttggtttttgatcctcacctccccc
i nomLeu3.chr1a            C 0 T 21791
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2276575 7149 +   2316924 I
e chlSab2.chr17             28554836 5244 -  71996105 I
e cerAty1.NW_012001495v1     2133811 5841 -   2157725 I
e macNem1.NW_012011356v1     2342533 76545 -   2996164 T
e macFas5.chr4              29337261 81325 - 170955103 T
e rheMac8.chr4              29674315 79614 + 172585720 T
e gorGor5.CYUI01015250v1     5430964   0 +   6154872 C

a score=1300559.000000
s hg38.chr6_GL000254v2_alt    417822 4666 +   4827813 [encoded data, 4678 characters]
s panTro5.chr6              29392433 4673 + 175400573 [encoded data, 4678 characters]
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29638137 4674 + 173848474 [encoded data, 4678 characters]
i panPan2.chr6             C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2276575 7149 +   2316924 I
e chlSab2.chr17             28554836 5244 -  71996105 I
e cerAty1.NW_012001495v1     2133811 5841 -   2157725 I
e macNem1.NW_012011356v1     2342533 76545 -   2996164 T
e macFas5.chr4              29337261 81325 - 170955103 T
e rheMac8.chr4              29674315 79614 + 172585720 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T
e gorGor5.CYUI01015250v1     5430964    0 +   6154872 C

a score=2862.000000
s hg38.chr6_GL000254v2_alt    422488 9 +   4827813 attaactga
s panTro5.chr6              29397106 9 + 175400573 attaattga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29642811 9 + 173848474 attaattga
i panPan2.chr6             C 0 C 0
s macFas5.chr4             141691748 9 + 170955103 attagtctg
i macFas5.chr4             n 81325 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2276575 7149 +   2316924 I
e chlSab2.chr17             28554836 5244 -  71996105 I
e cerAty1.NW_012001495v1     2133811 5841 -   2157725 I
e macNem1.NW_012011356v1     2342533 76545 -   2996164 T
e rheMac8.chr4              29674315 79614 + 172585720 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T
e gorGor5.CYUI01015250v1     5430964 0 +   6154872 C

a score=806899.000000
s hg38.chr6_GL000254v2_alt    422497 185 +   4827813 ttcagattttcta-ttttttcatgattcattgttgttatgtttctagaaatctaaccatttcttctaggtcatcctatttgttggtgtaaaattgttcgtagtattcttttatgatcttttgtacttctgtagtttcaattttaatgtctcctctttcatttcttattttgttagagtcttctttt--
s panTro5.chr6              29397115 185 + 175400573 ttcagattttcta-ttttttcatgattcactgttgttaggtttctagaaatctaaccatttcttctaggtcatcctatttgttggtgtaaaattgttcgtagtattcttttatgaacttttgtacttctgtagtttcaattttaatgtctcctctttcatttcttcttttgttagagtcttctttt--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29642820 185 + 173848474 ttcagattttcta-ttttttcatgattcactgttgttaggtttctagaaatctaaccatttcttctaggtcatcctatttgttggtgtaaaattgttcgtagtattcttttatgaacttttgtacttctgtagtttcaattttaatgtctcctctttcatttcttcttttgttagagtcttctttt--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1      775485 185 -   6154872 ttcagattttctatttttttcatgattcatttttgttatgtttctagaaatttaaccatttcttctaggttaccctattcgttggtgtaaaattgttcatagtattcttttatgagcttttgtacttctgtagtatcaattgtaatgtctcctctttcatttttgactttattagagtcttc-ttt--
i gorGor5.CYUI01015250v1   n 0 C 0
s rheMac8.chr4             142983613 183 - 172585720 ttcagattttcta-ttttttcgtgattcattcttgttatgtttctagaaatctaaccatttcttctagatcatcttatttgttggtgttaaactgttcatagtatta-tttatgatcttttgtacttctgtagtttcaattttaatgtctcctctttcatttcttattttattagagtcttc-ttt--
i rheMac8.chr4             n 79614 C 0
s macFas5.chr4             141691757 183 + 170955103 ttcagattttcta-ttttttcgtgattcattcttgttatgtttctagaaatctaaccatttcttctagatcatcttatttgttggtgttaaactgttcatagtatta-tttatgatcttttgtacttctgtagtttcaattttaatgtctcctctttcatttcttattttattagagtcttc-ttt--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1      722770 183 +   2996164 ttcagattttcta-ttttttcgtgattcattcttgttatgtttctagaaatctaaccatttcttctagatcatcttatttgttggtgttaaactgttcatagtatta-tttatgatcttttgtacttctgtagtttcaattttaatgtctcctctttcatttcttattttattagagtcttc-ttt--
i macNem1.NW_012011356v1   n 76545 C 0
s cerAty1.NW_012001495v1       81283 182 +   2157725 ttcagattttcta-ttttttcatgattca---ttgttatgtttctagaaatctaaccatttcttctaggttaccctatttgttggtgtaaaattgttcatagtattgttttatgatcttttgtacttctgtagtttcaattttaatgtctcctctttcatttctgactttattagagtcttctttt--
i cerAty1.NW_012001495v1   n 5841 C 0
s chlSab2.chr17             43435156 184 +  71996105 ttcagattttcta-ttttttcatgattcattcttgttatgtttctagaaatctaaccatttcttctaggtcatcttatttgttggtgtaaaactgttcatagtgtta-tttatgatcttttgtacttctgtagtttcaattttaatgtctcctctttcatttcttattttattagagtcttc-tttt-
i chlSab2.chr17            n 5244 C 0
s manLeu1.NW_012104165v1       97278 185 -   2316924 ttcagattttcta-ttttttcatgattcattcttgttatgtttctagaaatctaaccatttcttctaggttaccctatttgttggtgtaaaattgttcatagtattcttttacgatcttttgtacttctgtagtttccattttaatgtctcctctttcatttctgactttataagagtcttc-cttt-
i manLeu1.NW_012104165v1   n 7149 T 71149
s colAng1.NW_012115566v1      936685 184 +   3067355 ttcagattttctg-tttttccgtgattcattcttgttatgtttctagaaatctaaccatttcttctaggtcatcttatttgttggtgtaaaactgttcatagtatta-tttatgatcttttgtacctctgtagtttcaattttaatgtctcctctttcatttcttattttattagagtcttc-ttt-t
i colAng1.NW_012115566v1   N 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=5442690.000000
s hg38.chr6_GL000254v2_alt    422682 1242 +   4827813 ttttcttagttggtctgctaaagttttgtcaattgtttttatcttttcaaaaactgaa----ctgttagttttgcaaatgtgttcttttgttttctagtctcttacttatttctgctctgatctttgttatttccttccttctgctaactttgggattagtttgctcttctctttttctagcttcttgaaatgtaacattagg----ttgtttgggatctttcttcttttttaatatcggcatttattactataaactttcctcctgctaagaacttcttttgttacatcccataagttgtggtacgttgcattttcattttcatctgtcttaagatattttttaatttcccttttgatttcttcattaaccctttgtttattcaagagcgtgttggttaatttccacgtatgtaatattttcaaattttattgtattatttatttctattcatttctactttcatacttttgtggtcagaaaagatacttgatatgattt--------cagtcttcttaaaactgttgagtcttattttgttaccttat--------ttggataatgtcccatttgcacttgagaa----gaatgaatattctgttgctgttggatggaatgttctatatatgtctgttaggtccacttggtctaaagtgtatgtcaagtccagtgtttccttattgatttttgtctagatgatatgtccactgttgaaagtaaagtattgaaatcct-ctgctattattgtattgcagtctatctcttttcaggtctactaatgctttctttatatgtataggtgatcttatattaggtgcatatatatttacaattgttaagtccttttcatgaattgacccttttatcattacataatgaccttctttgtctcttttaacagttttggacttaaagttcatctcataaaagtacagcta---ccc---ttgtcttttgctttccacttgcatgaaataattttttcaatcaatgtgtgttcttcaagttaaagtgaacctcttacaggcagcctacgtctgcatattgtttttCAGTTTCTTTCCAATGCAAAGCATTTTAGTAGGTTGTCAAATATACAATTATTAGAAATATCTAAATATTACCTGTAAAAACTAG-TATATCACATTAGATAATTCTATAAAATAAGGAAACACAAATCACACATTGCC-ACAACCTCTGCAGTCCAATAATATCC-CCCGTTGATAGTACAAATTACAAATACATTTTTAAAA-TAAAGACATGATTTCGACA
s panTro5.chr6              29397300 1246 + 175400573 ttttcttagttggtctgctaaagttttgtcaattgtttttatctcttcaaaaactgaa----ctgttagttttgcaaatgtgttcttttgttttctagtctcttacttatttctgctctgatctttgttatttccttccttctgctaactttgggattagtttgctcttctctttttctagcttcttgaaatgtaacattaggttgtttgtttgggatctttcttcttttttaatatcggcatttattactataaactttcctcctgctaagaacttcttttgttacatcccataagttgtggtacgttgcattttcattttcatctgtcttaagatatttttaaatttcccttttgatttcttcattaaccctttgtttattcaagagcgtgttggttaatttccacgtatgtaatattttcaaattttatcgtattatttatttctattcatttctactttcatacttttgtggtcagaaaagatacttgatatgattt--------cagtcttcttaaaactgttgagtcttattttgttaccttat--------ttggataatgtcccatttgcacttgagaa----gaatgaatattctgttgctgttggatgaaatgttctatatatgtctgttaggtccacttggtctaaagtgtatgtcaagtccagtgtttccttattgatttttgtctagatgatatgtccactgttgaaagtaaagtattgaaatcct-ctgctattattgtattgcagtctatctcttttcaggtctactaatactttctttatatgtataggtgatcttatattaggtgcatatatatttacaattgttaagtccttttcacgaattgacccttttatcattacataatgaccttctttgtctcttttaacagttttggacttaaagttcatctcataaaagtacatcta---ccc---ttgtcttttgctttccacttgcatgaaataattttttcaatcaatgtgtgttcttcaagttaaagtgaacctcttacaggcagcctacgtctgcatattgtttttCAGTTTCTTTCCAATGCAAAGCATTTTAGTAGGTTGTCAAATATACAATTATTAGAAATATCTAAATATTACCTGTAAAAACTAG-TATATCACATTCGATAATTCTATAAAATAAGGAAACACAAATCACACATTGCC-ACAACCTCTGCAGTCCAATAATATCC-CCCGTTGATAGTACAAATTACAAATACATTTTTAAAA-TAAAGACATGATTTCGACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29643005 1246 + 173848474 ttttcttagttggtctgctaaagttttgtcaattgtttttatctcttcaaaaactgaa----ctgttagttttgcaaatgtgttcttttgttttctagtctcttacttatttctgctctgatctttgttatttccttccttctgctaactttgggattagtttgctcttctctttttctagcttcttgaaatgtaacattaggttgtttgtttgggatctttcttcttttttaatatcggcatttattactataaactttcctcctgctaagaacttcttttgttacatcccgtaagttgtggtacgttgcattttcattttcatctgtcttaagatatttttaaatttcccttttgatttcttcattaaccctttgtttattcaagagcgtgttggttaatttccacgtatgtaatattttcaaattttatcgtattatttatttctattcatttctactttcatacttttgtggtcagaaaagatacttgatatgattt--------cagtcttcttaaaactgttgagtcttattttgttaccttat--------ttggataatgtcccatttgcacttgagaa----gaatgaatattctgttgctgttggatgaaatgttctatatatgtctgttaggtccacttggtctaaagtgtatgtcaagtccagtgtttccttattgatttttgtctagatgatatgtccactgttgaaagtaaagtattgaaatcct-ctgctattattgtattgcagtctatctcttttcaggtctactaatactttctttatatgtataggtgatcttatattaggtgcatatatatttacaattgtgaagtccttttcacgaattgacccttttatcattacctaatgaccttctttgtctcttttaacagttttggacttaaagttcatctcataaaagtacatcta---ccc---ttgtcttttgctttccacttgcatgaaataattttttcaatcaatgtgtgttcttcaagttaaagtgaacctcttacaggcagcctacgtctgcatattgtttttCAGTTTCTTTCCAATGCAAAGTATTTTAGTAGGTTGTCAAATATACAATTATTAGAAATATCTAAATATTACCTGTAAAAACTAG-TATATCACATTCGATAATTCTATAAAATAAGGAAACACAAATCACACATTGCC-ACAACCTCTGCAGTCCAATAATATCC-CCCGTTGATAGTACAAATTACAAATACATTTTTAAAA-TAAAGACATGATTTCGACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1      775670 1243 -   6154872 ttttcttagttggtctactcaagttctgccaattgtttttatcttttcaaaaattcaa----gtcttagttttgtgaatgcattctattgttttctagcttcttatttatttctgctctgatctttgttatttccttccttctgctaactttgggattagtttgctcttctctttttctggtttcttgaaatgtaacattagg----ttgtttgggatctttcttcttttttaatataggcatttattactacaaacattcctcttgctaatatcttcttttgctacatgccataagttgtggtatgttgtgttttcattttcatctgtcttaagattttttttaattttgcttttgattttttatttaacccattgtttattcaggagcatgttgtttaatttccacgtttgtaaatattttaaattttctcctat----------tattcatttctactttcataactttgtggtcagaaaagatacttgatatgattt--------caatcttcttaaaactgtggagtcttattttgttccctaatatttgatcctggataatgtcccatttgcacttgagaa----gaatgagtattctgttgctgttggatggaatgttctatatatgtctgttaggtccatttgatctaatgtgcgtttcaagtccagtgtttccttattgatttctgtctagatgacatgttcattgttgaaagtgaagtattgaaaaacc-ctgctattactgtattgcagtctgtttctttttaggtctattaatagtttctttatacatttagatgatctagtattaggtgtatatatatttacaattgttacgtccttttgatgaattgacccttttatcat---gtaatgactttctctgtctctttttacagttttggacttaaagtttgtctaatataagtagagcta---cccctgctgtcttttggtttctacttgcatgaaatacttttttcagtcaatgtgtgttctttaagttaaagttagcctcttacaggcagcctatgtttgagtattgtttttCAGTTTTTTCCCAAAGCAAATCATTTTCGTAGGTTGTCAAATATACAATTATTAGAAATATCTAAATATTACCTGTAAAAATCAG-CATATTACATTAGATAATTCTATAAAATAAGAAAACACAAATCACACATTGCCAATAACCGCTGCAGTCCAAGAATATCCTCCTGTCAATAGTACAAATTACAAACACATTTTTAAAACTAAAGATGTTATTTAGACA
i gorGor5.CYUI01015250v1   C 0 n 0
s rheMac8.chr4             142983796 1240 - 172585720 ttctcttagttggtctactaaagttttgtcaattgtttttgtcttttcaaaaaccaaa----ct----gttttgtgaacgtgttcttttgttttgtagtctcttatttatttctgctctgatctttgttatttccttccttctgctaactttgggatttgtttg---ttctctttttctagtttcttgaaatgtaacattagg----ttgtttgggatctttcttcttttttaatataggcatttactactataaactttcctcctgctaagaacttcttttgttacctcccacaagttgtggtacattgtgttttcattttcatctgtcttaagatattttttaatttctattttgatttcttcattaacccattgtttattcaagagcatgttggttaatttccatgtttgtaatattttcaaactttctcctat----tatttctattcatttctactttcatacttttgtggtcagaaaagatacttgatatgatttcaatcttccaatcttcttaaaattattgaatcttattttgttacctaatatttgatcctggataatgtcccatttgcacttgagaa----gaatgaatattctgttgctgttggatgaaatattctatatatgtctgttaggtccatttggtctaaagtgtatgtcaagtccagtgtttccttattgatttttgtctagatgataagtccactgttgaaagtgaagtattgaaatcct-ctgctattattgtattgcaatctatctcttttcaggtctactaatactttctttatatgttgaggttatcttatattaggtgcatatatatttacaatggttaagtccttttcatgatttgacccttttatcattatgtaatgac---ctttgtctcttttaacagttttggacttaaagttcatc-----taagtacagcta---ctc---ttgtcttttgctttccacttgcacgaaataattttttcaatcaatctgtgttcttcaagttaaagtgagccttttacaggcagcctgcatctgcgtattgttcttCAGTTTCTTTCCAATGCAAAGCATTTTAGTAGGTTGTCAAATGTACAATTATTAGAAA-ATCTAAATATTACCTGTAAAAACTAGTTACATCACATTAGATAATTCTATAAAATAAGGAAACACGAATCACACATTGCCAATAACCTCTGCAGTCCAATAATACCC-CCCATCGATAGTATAAATTACAAATGCATTTTTAAAA-TAAAGACATGATTTAGACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             141691940 1244 + 170955103 ttctcttagttggtctactaaagttttgtcaattgtttttgtcttttcaaaaaccaaa----ct----gttttgtgaatgtgttcttttgttttgtagtctcttatttatttctgctctgatctttgttatttccttccttctgctaactttgggattcgtttg---ttctctttttctagtttcttgaaatgtaacattaggttgtttgtttgggatctttcttcttttttaatataggcatttactactataaactttcctcctgctaagaacttcttttgttacctcccacaagttgtggtacattgtgttttcattttcatctgtcttaagatattttttaatttctattttgatttcttcattaacccattgtttattcaagagcatgttggttaatttccatgtttgtaatattttcaaactttctcctat----tatttctattcatttctactttcatacttttgtggtcagaaaagatacttgatatgatttcaatcttccaatcttcttaaaattgttgaatcttattttgttacctaatatttgatcctggataatgtcccatttgcacttgagaa----gaatgaatattctgttgctgttggatgaaatgttctatatatgtctgttaggtccatttggtctaaagtgtatgtcaagtccagtgtttccttattgatttttgtctagatgataagtccactgttgaaagtgaagtattgaaatcct-ctgctattattgtattgcagtctatctcttttcaggtctactaatactttctttatatgttgaggttatcttatattaggtgcatatatatttacaatggttaagtccttttcatgatttgacccttttatcattatgtaatgac---ctttgtctcttttaacagttttggacttaaagttcatc-----taagtacagcta---ctc---ttgtcttttgctttccacttgcatgaaataattttttcaatcaatctgtgttcttcaagttaaagtgagccttttacaggcagcctgcatctgcgtattgttcttCAGTTTCTTTCCAATGCAAAGCATTTTAGTAGGTTGTCAAATGTACAATTATTAGAAA-ATCTAAATATTACCTGTAAAAACTAGTTACATCACATTAGATAATTCTATAAAATAAGGAAACACGAATCACACATTGCCAATAACCTCTGCAGTCCAATAATACCC-CCCATCGATAGTACAAATTACAAATGCATTTTTAAAA-TAAAGACATGATTTAGACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1      722953 1244 +   2996164 ttctcttagttggtctactaaagttttgtcaattgtttttgtcttttcaaaaaccaaa----ct----gttttgtgaatgtgttcttttgttttgtagtctcttatttatttctgctctgatctttgttatttccttccttctgctaactttgggattcgtttg---ttctctttttctagtttcttgaaatgtaacattaggttgtttgtttgggatctttcttcttttttaatataggcatttactactataaactttcctcctgctaagaacttcttttgttacctcccacaagttgtggtacattgtgttttcattttcatctgtcttaagatattttttaatttctattttgatttcttcattaacccattgtttattcaagagcatgttggttaatttccatgtttgtaatattttcaaactttctcctat----tatttctattcatttctactttcatacttttgtggtcagaaaagatacttgatatgatttcaatcttccaatcttcttaaaattgttgaatcttattttgttacctaatatttgatcctggataatgtcccatttgcacttgagaa----gaatgaatattctgttgctgttggatgaaatgttctatatatgtctgttaggtccatttggtctaaagtgtatgtcaagtccagtgtttccttattgatttttgtctagatgataagtccactgttgaaagtgaagtattgaaatcct-ctgctattattgtattgcagtctatctcttttcaggtctactaatactttctttatatgttgaggttatcttatattaggtgcatatatatttacaatggttaagtccttttcatgatttgacccttttatcattatgtaatgac---ctttgtctcttttaacagttttggacttaaagttcatc-----taagtacagcta---ctc---ttgtcttttgctttccacttgcacgaaataattttttcaatcaatctgtgttcttcaagttaaagtgagccttttacaggcagcctgcatctgcgtattgttcttCAGTTTCTTTCCAATGCAAAGCATTTTAGTAGGTTGTCAAATGTACAATTATTAGAAA-ATCTAAATATTACCTGTAAAAACTAGTTACATCACATTAGATAATTCTATAAAATAAGGAAACACGAATCACACATTGCCAATAACCTCTGCAGTCCAATAATACCC-CCCATCGATAGTACAAATTACAAACGCATTTTTAAAA-TAAAGACATGATTTAGACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1       81465 1246 +   2157725 ttttcttaattggtctactaaagttttgtcaattgtttttatcttttcaaaaattgaagtcttt----gttttgtgaatgtgttctattgttttctagtctcttattcatttctgctctgatctttgttatttccttccttctgctaactttgggattcgtttgctcttctctttttctagtttcttgaaatgtaacattaggctgtttgtttgggatctttcttcttttttaatatagacatttattactataaacattcctcttgctaataccttcttttgttacacccggtaagttgtggtatgttgtattttcattttcatctgtcttaagatattttttgatttctattttgattttttctttaacccattgtttattcaggagcatgtcatttaatttccacgtgtgtaaatatttcaaattttttcctat----------tattcatttatactttcatacctttgtggtcagaaaagatacttgatatgattt--------caatcttcttaaaactatggagtcttattttgttccctaatatttgatcctggataatatcccatttgcacttgagaa----gaatgagtattctgctgctgttggatggaatgttctatgtatgtctgttaggtccatttggtctaatgcacatttcaagtccagtgtttccttattgatatctgtctagatgacatgttcatcgttgaaagtgaagtattgaaaaactcctgctattattgtattgcagtctaattcttttcatgtctactaatactttctttgtacatttagatgatctggtattaggtgcatatatatttacaattgttatgtccttttgatgaattcaccctttgatc---atgtaatgactttctttgtctctttttatagttttggacttaaagtttgtctaatataagcagagctatccctg---ctgtcttttggtttctacttgcatgaaatatttttttcaatcaatgtgtgttcttcaagttaaagtgagcctctcataggcagcctgcatctgcgtattgtttttCAGTTTCTTTCCAATGCAAAGCATTTTAGTAGGTTGTCAAATATACAATTATTAGAAATATATAAAAATTACCTGTAAAAATTAG-TATATCACATTAGATAATTCTGTAAAATACGAAAACACAAATCACACATTGCCAACAACCGATGCAGTTCAAGATTA-TC-CCCGTCAATAGTACAAATTACAAACACATTTTTAAAACTAAAGATGTTATTTAGACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             43435340 1240 +  71996105 -tctcttagttggtctactaaagttttgtcaattgtttttgtcttttcaaaaaccgaa----ctgttagttttgtgaatgtgttcttttgttttgtagtctcttatttatttctgctctgatctttgttatttccttccttctgctaactttgggattcgtttg---ttctctttttctagtttcttgaaatgtaacgttagg----ttgtttgggatctttcttcttttttaatataggcatttattactataaactttcctcctgctaagaacttcttttgttacctcccataagttgtggtacattgtgttttcattttcatctgtcttaagatattttttaatttctattttgatttcttcattaacccattgtttattcaagagcatgttggttaatttccatgtttgtaatattttcaaactttctcctat----tatttctattcatttctactttcatacttttgtggtcagaaaagatacttgatatgatttcaatcttccaatcttcttaaaattgttgaatcttattttgttacctaatatttgatcctggataatgtccca-ttgcacttaagaagaatgaatgaatattctgttgctgttggatgaaatgttctgtatatgtctgttaggtccatttggtctaaagtg--tgtcaagtccagtgtttccttattgacttttgtctagatgataagtccactgttgaaagtgaagtaatgaaatcct-ctgctattattgtattgcagtctatctcttttcaggtctactaata----ctttatatgttgaggttgtctcatattaggtgcatatatatttacaattgttaagtccttttcatgatttgacccttttatcattatgtaatgac---ctttgtctcttttaacagttttggacttaaagttcatc-----taagtacagcta---ctc---ttgtcttttgctttccacttgcatgaaataattttttcaatcaatctgtgttcttcaagttaaagtgagccttttacaggcagcctgcatctgcgtattgtTTTTCAGTTTCTTTCCAATGCAAAGCATTTTAGTAGGTTGTCAAATATACAATTATTAGAAA-ATCTAAATATTACCTGTAAAAACTAGTTATATCACATTAGATAATTCTATAAAATAAGGAAACACAAATCACACATTGCCAATAACCTCTGCAGTCCAATAATATCC-CCCATCGATAGTAGAAATTGCAAACGCATTTTTAAAA-TAAAGAAATGATTTAGACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1       26314 1246 -   2316924 ttttcttagttagtctactaaagttttgtcaattgtttttgtcttttcaaaaaccgaa----ctgttagttttgtgaatgtgttcttttgttttgtagtctcttatttatttctgctctgatctttgttatttccttccttctgctaactttgggattcatttg---ttctctttttctagtttcttgaaatgtaacgttaggttgtttgtttggtatctttcttcttttttaatataggtatttattactataaactttcctcctgctaagaacttcttttgttacctcccataagttgtggtacattgtgttttcattttcatctatcttaagatattttttaatttctattttgattccttcattaacccattgtttattcaagagcatgttggttaatttccatgtttataatattttcaaactttctcctat----tatttctattcatttctactttcatacttttgtggtcagaaaagatacttgatatgatttcaatcttccaatcttcttaaaattgttgaatcttattttgttacctaatatttgatcctggataatgtcccatttgcacttgagaa----gaatgaatattctgttgctgttggatgaaatgttctatatatgtctgttaggtccatttggtctaaagtgtatgtcaagtccagtgttttcttattgatttttgtctagatgataagtccactgttgaaagtgaagtattgaaatcct-ctgctattattgtattgcagtctatctcttttcaggtctactaatactttctttataagttgaggttatcttatattaggtgcatatatatttacaattgttaagtccttttcatgatttgacccttttatcatcatgtaatgac---ctttgtctcttttaacagttttggacttaaagttcatc-----taagtacagtta---ctt---ttgtcttttgctttccacttgcatgaaataattttttcaatcaatgtgtgttcttcaagttaaagtgagcctctcataggcagcctgcatctgcgtattgtttttCAGTTTCTTTCCAATGCAAAGCATTTTAGTAGGTTGTCAAATATACAATTATTAGAAA-ATCTAAATATTACCTGTAAAAACTAGTTATATCATATTAGATAATTCTATAAAATAAGGAAACACAAATCACACATTGCCAATAACCTCTGCAGTCCAATAATACCC-TCCATCGATAGTACAAATTGCAAACACA-TTTTAAAA-TAAAG-AATGATTTAGACA
i manLeu1.NW_012104165v1   T 71149 C 0
s colAng1.NW_012115566v1      936869 1246 +   3067355 ttttcttagttggtctactaaggttttgtcaattgtttttgtcttttcaaaaaccgaa----ctgttagttttgtgaatgtgttcttttgttttgtagtctcttatttatttctgctctgatctttgttatttccttccttctgctaactttgggatttctttg---ttctctttttctagtttcttgaaatgtaacattaggttgtttgtttgggatctttcttcttttttaatataggcatttattactataaactttcctcctgctaagaacttcttttgttacctcccataagttgtggtacattgtgttttcattttcatctgtcttcagatattttttaatttcccttttgatttcttcattaacccattgtttattcaagagtatgttggttaatttccattgttgtaacattttcaaactttctcctat----tatttctattcatttctactttcatatttttgtggtcagaaaagatacttgatatgatttcaatcttccaatgttcttaaaattgttgagtcttattttgttacctaatatttgatcctggataacgtaccatttgcacttgagaa----gaatgaatattccgttgctgttggatgaaattttctatatatgtctgttaggtccatttggtctaaagtgtatgtcaagtccagtgtttccttattgatttttgtctagatgataagtccactgttgaaagtgaagtactgaaatcct-ctgctattattgtattgcagtctatctcttttcaggtctactaatactttctttatatgttgaggttatcttatattaggtgcatatatatttacaattgttaactccttttcatgatttgacccttttatcattttgtaatgac---ctttgtctcttttaacagttttggacttaaagttcatc-----taagtacagtta---ccc---ctgtcttttgctttccacttgcatgaaataattttttcaatcaatgtgtgttcttcaagttaaagtgagcctcttacaggcagcctgcgtctgcgtattgtttttCAGTTTCTTTCCAATGCAAAGCATTTTAGTAGGTTGTCAAATACA-AATTATTAGAAA-ATCTAAATATTACCTGCAAAAACTAGTTATATTACATTAGATAATTCTATAAAATAAGGAAACACAAATCACACATTGCCAATAACCTCTGCAGGCCAATAATA-CC-CCCATAGATAGTACAAATTGCAAACACATTTTTAAAA-TAAAGACATGATTTAGACA
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1400069.000000
s hg38.chr6_GL000254v2_alt    423924 295 +   4827813 TTTAAACCAAAGTAACTATGGCTAACCTAAATACATTCATTCATCAAGTACAATAAATTAAGCATTGCTACTTATAGTCACTAATAACAAAATTTTAGGTTCAATTTTACCTAAAATTTCATAAATCTTCCAATACAGTTCCCATAGTAAAGTGTCTTTGTGTGTGCCATTTTAATTTATATGCAGGTGCATCATATATCAGACTTAAGACTATTTCACTTCATAATTAAATTGTTCATACATATATATTGAAAGTGAACACCCGGCCAAAATTTAATCCCAATGATGACAAAAT
s panTro5.chr6              29398546 295 + 175400573 TTTAAACCAAAGTAACTATGGCTAACCTAAATACATTCATTCATCAAGTACAATAAATTAAGCATTGCTACTTATAGTCACTAATAACAAAATTTTAGGTTCAATTTTACCTAAAATTTCATAAATCTTCCAATACAGTTCCCATAGTAAAGTGTCTTTGTGTGTGCCATTTTAATTTATATGCGGGTGCATCATATATCAGACTTAAGACTATTTCACTTCATAATTAAATAGTTCATACATATATATTGAAAGTGAACACCCGGCCAAAATTTAATCCCAATGATGACAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29644251 295 + 173848474 TTTAAACCAAAGTAACTATGGCTAACCTAAATACATTCATTCATCAAGTACAATAAATTAAGCATTGCTACTTATAGTCACTAATAACAAAATTTTAGGTTCAATTTTACCTAAAATTTCATAAATCTTCCAATACAGTTCCCATAGTAAAGTGTCTTTGTGTGTGCCATTTTAATTTATATGCGGGTGCATCATATATCAGACTTAAGACTATTTCACTTCATAATTAAATAGTTCATACATATATATTGAAAGTGAACACCCGGCCAAAATTTAATCCCAATGATGACAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5430964 295 +   6154872 tttAAACCAAAGTAACTATGGCTAACCTAAATACATTCATTCATCAAGTACAATAAATTAAGCATTGCTACTTATAGTTACTAATAACAAAATTTTAGGTTCAATTTTACCTAAAATTTCATAAATCTTCCAATACAGTTCCCATAGTAAAGTGTCTTTGTGTGTGCCATTTTAATTTATATGCGGGTGCATCATATATCAGACTTAAGACTATTTCACTTCATAATTAAATTGTTCATACATATATATTGAAAGTGAACACCCGGCCAAAATTTAATCCCAATGATGACAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             142985036 295 - 172585720 TTTAAACCAAAGCAACCATAGCTAACCTAAATACATTTATTCCTCAAGTACAATAAATTAAGCATTGCTACTTATAGTCACTAACAACAAAATTTTAGGTTCAATTTTACCTAAAATTTCATAAATCTTCCAATACAGTTCCCATAGTAAAATGTCTTTGTGTGTGCCATTTTAATTTATATGCAGGTGAATCATATACCAGATTTAAGACTATTTCACTTCATAATTAAATTGTTCATACATATATATTGAAAGTGAATACCCGGCCAAAATTTAATCCCAAAGATGACAAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             141693184 295 + 170955103 TTTAAACCAAAGCAACCATAGCTAACCTAAATACATTTATTCCTCAAGTACAATAAATTAAGCATTGCTACTTATAGTCACTAACAACAAAATTTTAGGTTCAATTTTACCTAAAATTTCATAAATCTTCCAATACAGTTCCCATAGTAAAGTGTCTTTGTGTGTGCCATTTTAATTTATATGCAGGTGAATCATATACCAGACTTAAGACTATTTCACTTCATAATTAAATTGTTCATACATATATATTGAAAGTGAATACCCGGCCAAAATTTAATCCCAAAGATGACAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1      724197 295 +   2996164 TTTAAACCAAAGCAACCATAGCTAACCTAAATACATTTATTCCTCAAGTACAATAAATTAAGCATTGCTACTTATAGTCACTAACAACAAAATTTTAGGTTCAATTTTACCTAAAATTTCATAAATCTTCCAATACAGTTCCCATAGTAAAGTGTCTTTGTGTGTGCCATTTTAATTTATATGCAGGTGAATCATATACCAGACTTAAGACTATTTCACTTCATAATTAAATTGTTAATACATATATATTGAAAGTGAATACCCAGCCAAAATTTAATCCCAAAGATGACAAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1       82711 295 +   2157725 TTTAAACCAAAGTAACCATGACTAGCCTAAATACATTCATTCATCAAGTACAATAAATTTAGCATTGCTACTTACAGTCACTAATAACACAATTTTAGGTGCAATTTTACCTAAAATTCCATAAATTTTCCAATATAGTTCTGAAAGTAAAGTGTCTTTGTGCATGCCATTTCCATTTTTATGTGGGTACATCATATATCAGACTTAAGGCTATTTCACCTCATTATTAAATTGTTCATAGCCATATATAGAAAGTGAACACCAGGCCAAAATTTAATCCCAATGATGACAAAAT
i cerAty1.NW_012001495v1   C 0 I 385
s chlSab2.chr17             43436580 295 +  71996105 TTTAAACCAAAGCAACCATAGCTAACCTAAATACATTCATTCCTCAAGTACAATAAATTAAGCATTGCTACTTATAGTCACTAACAACAAAATTTTAGGTTCAATTTTACCTAAAATTTCATAAATCTTCCAATACAGTTCCCATAGTAAAGTGTCTTTGTGTGTGCCATTTTAATTTATACGCAGGTGAATCATATATCAGACTTAAGACTATTTCACTTCATAATTAAATTGTTCATACATATATATTGAAAGTGAATACCTGGCCAAAATTTAATCCCAAAGATGACAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1       27560 295 -   2316924 TTTAAACCAAAGCAACCATAGCTAACCTAAATACATTCATTCCTCAAGTACAATAAATTAAGCATTGCTACTTATAGTCACTAACAACAAAATTTTAGGTTCAATTTTACCTAAAATTTCATAAATCTTCCAATACAGTTCCCATAGTAAAGTGTCTTTGTGCGTGCCATTTTAATTTATATGCGGGTGCATCATATATCAGACTTAAGATTATTTTGCTTCATAATTAAATTGTTCATACATATATATTGAAAGTGAATATCCGGCCAAAATTTAATCCCAAAGATGACAAAAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1      938115 295 +   3067355 TTTAAACCAAAGCAACCATAGCTAACCTAAATACATACATTCCTCAAGTACAATAAATTAAGCATTGCTACTTATAGTCACTAACAACAAAATTTTAGGTTCAATTTTACCTAAAATTTCATAAATCTTCCAATACAGTTCCCATAGTAAAGTGTCTTTGTGCGTGCCATTTTAATTTATATGCGGGTGCATCATATATCAGACTTAAGACTATTTCACTTCGTAATTAAATTGTTCATACATATATATTGAAAGTGAAAACCCGGCCAAAACTTAATCCCAAAGATGACAAAAT
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=262059.000000
s hg38.chr6_GL000254v2_alt    424219 67 +   4827813 GTAAAATTGTTTTAAATTCTTGAATGCATATACTGATTTGTTTAATTGCCTGCATACTACTTTTTTT
s panTro5.chr6              29398841 67 + 175400573 GTAAAATTGTTTTAAATTCTTGAATGCATATACTGATTTGTTTAATTGCCTGCATACTACTTTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29644546 67 + 173848474 GTAAAATTGTTTTAAATTCTTGAATGCATATACTGATTTGTTTAATTGCCTGCATACTACTTTTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5431259 67 +   6154872 GTAAAATTGTTTTAAATTCTTGAATGCATATACTGATTTGTTTAATTGCCTGCATACTACTTTTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             142985331 67 - 172585720 GTAAAATTGTTTTAAATTCTTGAATGCATATACTGATTTGTTTAATTGCCTGTGTACTACTTTTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             141693479 67 + 170955103 GTAAAATTGTTTTAAATTCTTGAATGCATATACTGATTTGTTTAATTGCCTGTGTACTACTTTTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1      724492 67 +   2996164 GTAAAATTGTTTTAAATTCTTGAATGCATATACTGATTTGTTTAATTGCCTGTGTATTACTTTTTTA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             43436875 67 +  71996105 GTAAAATTGTTTTAAATTCTTGAATACATGTACTGATTTGTTTAATTGCCTGTGTACTACTTTTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1       27855 67 -   2316924 GTAAAATTGTTTTAAATTCTTAAATGCATATACTGATTTGTTTAATTGCCTGTGTACTACTTTTTTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1      938410 67 +   3067355 GTAAAATTGCTTTAAATTCTTGAATGCATATACTGATTTGTGTAATTGCCTGTGTACTACttttttt
i colAng1.NW_012115566v1   C 0 I 259
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e cerAty1.NW_012001495v1       83006 385 +   2157725 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=42165.000000
s hg38.chr6_GL000254v2_alt    424286 10 +   4827813 AATTAGAGAC
s panTro5.chr6              29398908 10 + 175400573 AATTAGAGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29644613 10 + 173848474 AATTAGAGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5431326 10 +   6154872 AATTAGAGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             142985398 10 - 172585720 AATTAGAGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             141693546 10 + 170955103 AATTAGAGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1      724559 10 +   2996164 AATTAGAGAC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             43436942 10 +  71996105 AATTAGAGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1       27922 10 -   2316924 AATTAGAGAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1      938736 10 +   3067355 AATTAGAGAC
i colAng1.NW_012115566v1   I 259 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e cerAty1.NW_012001495v1       83006 385 +   2157725 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=253303.000000
s hg38.chr6_GL000254v2_alt    424296 53 +   4827813 TATCAAAGTAAGTAATAAGAATTTAAATATTAACTCAAAAAAAGATGAAGCCT
s panTro5.chr6              29398918 53 + 175400573 TATCAAAGTAAGTAATAAGAATTTAAATATTAACTCAAAAAAAGATGAAGGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29644623 53 + 173848474 TATCAAAGTAAGTAATAAGAATTTAAATATTAACTCAAAAAAAGATGAAGGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5431336 53 +   6154872 TATCAAAGTAAGTAATAAGAATTTAAATATTAACTCAAAAAAAGATGAAGGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             142985408 53 - 172585720 TATCAAAGTAAGTAATGAGGATTTAAATATTAACTCAAAAAAAGATGAAGGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             141693556 53 + 170955103 TATCAAAGTAAGTAATGAGAATTTAAATATTAACTCAAAAAAAGATGAAGGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1      724569 53 +   2996164 TATCAAAGTAAGTAATGAGAATTTAAATATTAACTCAAAAAAAGATGAAGGCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1       83391 52 +   2157725 TATCACAGTAAATAATGAGAATTT-AATATTAACTCAAAAAAAGATGAAGGCT
i cerAty1.NW_012001495v1   I 385 T 70575
s chlSab2.chr17             43436952 53 +  71996105 TATCAAAGTAAGTAATGAGAAATTAAATATTAACTCAAAAAAAGATGAAGGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1       27932 53 -   2316924 TATCAAAGTAAGTAATGAGAATTTAAATATTAACTCAAAAAAAGATGAAGGCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1      938746 53 +   3067355 TATCAAAGTAAGTAATGAGAATTTAAATATTAACTCAAAAAAAGATGAAGGCT
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=354218.000000
s hg38.chr6_GL000254v2_alt    424349 75 +   4827813 TCAACCTTCCTACAATAGTAACAAGCATTTTAAATAACAATACAAGGAGTCTGTAAGCTAAAAAGTAACTTCATA
s panTro5.chr6              29398971 75 + 175400573 TCAACCTTCCTACAATAGTAACAAGCATTTTAAATAACAATACAAGGAGTCTGTAAGCTAAAAAGTAACTTCATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29644676 75 + 173848474 TCAACCTTCCTACAATAGTAACAAGCATTTTAAATAACAATACAAGGAGTCTGTAAGCTAAAAAGTAACTTCATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5431389 75 +   6154872 TCAACCTTCCTACAATAGTAACAAGCATTTTAAATAACAATACAAGGAGTCTGTAAGCTAAAAAGTAACTTCATA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             142985461 75 - 172585720 TCAACCTTCCTACAATAGTAGCAAGCATTTTAAATAACAATACCAGGAGTCTGTAAGCTAAAAAGTAACTTTATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             141693609 75 + 170955103 TCAACCTTCCTACAATAGTAGCAAGCATTTTAAATAACAATACCAGGAGTCTGTAAGCTAAAAAGTAACTTTATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1      724622 75 +   2996164 TCAACCTTCCTACAATAGTAGCAAGCATTTTAAATAACAATACCAGGAGTCTGTAAGCTAAAAAGTAACTTTATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1       12868 74 +   2157725 TCAACCTTCCTACAATTATAACAGCAATTTTTAATAACAATACC-GGAGTCTGTAAGCTAAAAAGTAACTTTATA
i cerAty1.NW_012001495v1   T 70575 I 173
s chlSab2.chr17             43437005 75 +  71996105 TCAACCTTCCTACAATAGTAACAAGCATTTTAAATAACAATACCAGGAGTCTGTAATCTAAAAAGTAACTTTATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1       27985 75 -   2316924 TCAACCTTCCTACAATAGTAACAAGCATTTTAAATAACAATACCAGGAGTCTGTAAGCTAAAAAGTAACTTTATA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1      938799 75 +   3067355 TCAACCTTCCTACAATAGTAACAAGTATTTTAAATAACAATACCAGGAGTCTGTAAGCTAAAAAGTAACTTTATA
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=298071.000000
s hg38.chr6_GL000254v2_alt    424424 75 +   4827813 TTCATTGCAAAACTTAAAATACCAGTGAATTGAAGATAAGATTGAGGTCTAAAATATTTGTACTGTATTGTAAAA
s panTro5.chr6              29399046 75 + 175400573 TTCATTGCAAAACTTAAAATACCAGTGAATTGAAGATAAGATTGAGGTCTAAAATATTTGTACTGTATTGTAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29644751 75 + 173848474 TTCATTGCAAAACTTAAAATACCAGTGAATTGAAGGTAAGATTGAGGTCTAAAATATTTGTACTGTATTGTAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5431464 75 +   6154872 TTCATTGCAAAACTTAAAATACCAGTGAATTGAAGATAAGATTGAGGTCTAAAATATTTGTACTATATTGCAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             142985536 75 - 172585720 TTCATTGCAAAATTTAAAATACCAGTGAATTGAAGATAAGATTAAGGTCTAAAATATTTGTACTAAATTGTAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             141693684 75 + 170955103 TTCATTGCAAAATTTAAAATACCAGTGAATTGAAGATAAGATTAAGGTCTAAAATATTTGTACTAAATTGTAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1      724697 75 +   2996164 TTCATTGCAAAATTTAAAATACCAGTGAATTGAAGATAAGATTAAGGTCTAAAATATTTGTACTAAATTGTAAAA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             43437080 75 +  71996105 TTCATTGCAAAATTTAAAATACCAGTGAATTGAAGATAAGATTAAGGTCTAAAATATTTGTACTAAATTgtaaaa
i chlSab2.chr17            C 0 n 0
s manLeu1.NW_012104165v1       28060 75 -   2316924 TTCATTGCAAAATTTAAAATACCAGTGAATTGAAGATAAGATTGAGGTCTAAAATATTTGTACTAAATTGTAAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1      938874 75 +   3067355 TTCATTGCAAAATTTAAAATACCAGTGAATTGAAGATAAGATTGAGGTCTAAAATATTTGTACTAAATTGTAAAA
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e cerAty1.NW_012001495v1       12942 173 +   2157725 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=362566.000000
s hg38.chr6_GL000254v2_alt    424499 128 +   4827813 TACAATTTAAAATGTGCAGTTAATTTGCTTGTGGACATGTAATGGAATGTTTTTCAACAGTAATGTTATGTTAAACAC-ACTTTAAATGGTCACTCTAAGCAAACATAACCTTACTAGCAAGAAAAGCG
s panTro5.chr6              29399121 128 + 175400573 TACAATTTAAAATGTGCAGTTAATTTGCTTGTGGACATGTAATGGAATGTTTTTCAACAGTAATGTTATGTTAAACAC-ACTTTAAATGGTCACTCTAAGCAAACATAACCTTACTAGCAAGAAAAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29644826 128 + 173848474 TACAATTTAAAATGTGCAGTTAATTTGCTTGTGGACATGTAATGGAATGTTTTTCAACAGTAATGTTATGTTAAACAC-ACTTTAAATGGTCACTCTAAGCAAACATAACCTTACTAGCAAGAAAAGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5431539 128 +   6154872 TACAATTTAAAATGTGCCGTTAATTTGCTTGTGGACATGTAATGGAATGTTTTTCAACAGTAATGTTATGTTAAACAC-ACTTTAAATGGTCACTCCAAGCAAACATAACCTTACTAGCAAGAAAAGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             142985611 129 - 172585720 TACAGTTTAAAATACGCAGTTAATTTGCTTGTGGACATGTAATGGTATGTTTTTCAACAGTAATGTTATGTTAAACACTACTTTAAATGGTCACTCTAAGTAAACATAACCTTACTAGCAAGAAAAGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             141693759 129 + 170955103 TACAGTTTAAAATACGCAGTTAATTTGCTTGTGGACATGTAATGGTATGTTTTTCAACAGTAATGTTATGTTAAACACTACTTTAAATGGTCACTCTAAGTAAACATAACCTTACTAGCAAGAAAAGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1      724772 129 +   2996164 TACAGTTTAAAATACGCAGTTAATTTGCTTGTGGACATGTAATGGTATGTTTTTCAACAGTAATGTTATGTTAAACACTACTTTAAATGGTCACTCTAAGTAAACATAACCTTACTAGCAAGAAAAGTG
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1       28135  96 -   2316924 TAAAGTTTAAAATATGCAGTTAATTTGCTTGTGGACATGTAATGGTATGTTTTTCAACAGTAATGTTATGTTAAACA---------------------------------CTTACTAGCAAGAAAAGTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1      938949 129 +   3067355 TACAGTTTAAAATATGCAGTTAATTTGCTTGTGGACATGTAATGGTATGTTTTTCAACAGTAATGTTATGTTAAACACTACGTTAAATGGTCACTCTAAGTAAACACAACCTTACTAGTAAGAAAAGTG
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             43437155   0 +  71996105 I
e cerAty1.NW_012001495v1       12942 173 +   2157725 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=5521236.000000
s hg38.chr6_GL000254v2_alt    424627 1414 +   4827813 AAAAATTAAGGCTTTCATGCTATCTATATCTACTACACAAAGTCAAAAGTCAAATAGAGCTTACAATGTGGCAAAAT---------ATTTCTAACTTCTGTGACATTAGTTGCTTCACCTCAACTCAATACTTATCATCTTATCTTTATACAAACTCAAATGCTAGTTATCTTTACTATCCATAAATACAaattaaactaaggagcttccgcacagcaaaagaaactataaatagaataaacagacaacttacggaaggtgagaaaagattcacaaactatgcatacaacaaaggtctaatatccagaatctataaggaacttaaatcaac-----aaacataaccccattaaaaaattaacaaatgacaaaggatgaacagacacttctcaaaagaagacataaaggtgaccaataaacatatggaaaaaattgttcatcattactaatcatcagagaaacggaaatcaaaaccacaatgagattccatctcacaccagtcagaatggctgctatttaaaagtcaaaaaacaacagatattgcggaggctgcagagaaacgcgaacgctt-atacactgttggtgagaatgaacattagttcagccactgtggaaagcagtttggagaattt-tccaaaagaactaaaaacagagctaccattggacccagcaattccattaccgcgtatttagtcaaaggaaaatatatcattataccaaaaggacacacgcactcatgttcatggcagcactattcacaatagcagagacatagaaccaacctaggtgcccatcagtggtggattggatagagagaatgtggAGTTCCGGCAGAGACCCGGGTGAGACGCGCTGACCATGGGCCTGCGGAGGGGCTGGGGGTTCAGGACCTCCCGCAGCCTCTGCCCTGCAGGCTCCAGGTGCCCTCGCTGTGGCTCCCCTCGCGGGCCCAGGCCTGAAGAAGCCGCGAACCTCTCTTCCCTACCCCACCTCGGTGACAGATGGCAGCTCCTCTCTCAGCCCAGACCCCGCCGGCCTCCATGTCTCCCGGCCCAGCCCTGCGGGGCCTAAACTAAGCCCCTGCCGAGCTGCTAGGATGCAGCGCATTTGAGTGGCTGCGGGCGTGGGGGGCCGGGAAGCATGGTGACCGCCCCAACTCGCAGCGGAGGCCGTTAGGGTGTGGAGAGCGCGGGAAGGTGGGTCGCCTGCCACTGGGGCGCGGGCAGATCGGACCGCTCTGTCCCAACTGGTCGAGACCGACCTAGTCCTGACGAC-AGGAACAACGGCATTAACAACGGCCGGAAGGTGAGCAGTGTCCCAGACAACGACGGATAGCGGCCACCTGGCCACTGGTCTTCCTTCTCTACCAGACCTGTATGTGGGAAGAGAGAAGTGGTGGAACAACAGGCCACAtttggcgcattggag
s panTro5.chr6              29399249 1413 + 175400573 AAAAATTAAGGCTTTCATGCTATCTATATCTACTACACAAAGTCAAAAGTCAAATAGAGCTTACAATGTGGCAAAAT---------ATTTCTAACTTCTGTGACATTAGTTGCTTCACCTCAACTCAATACTTATCATCTTATCTTTATACAAACTCAAATGCTAGTTATCTTTACTATCCATAAATACAaattaaactaaggagcttccgcacagcaaaagaaactataaatagaataaacagacaacttacggaaggtgagaaaagattcacaaactatgcatacaacaaaggtctaatatccagaatctataaggaacttaaatcaac-----aaacataaccccattaaaaaattaacaaatgacaaaggatgaacagacacttctcaaaagaagacataaaggtgaccaataaacatatggaaaaaattgttcatcattactaatcatcagagaaatgcaaatcaaaaccacaatgagattccatctcacaccagtcagaatggctgctatttaaaagtcaaaaaacaacagatattgcggaggctgcagagaaacgcgaacgctt-atacactgttggtgagaatgaacattagttcagccactgtggaaagcagtttggagaattt-tccaaaagaactaaaaacagagctaccattggacccagcaattccattaccgcgtatttagtcaaaggaaaatatatcattataccaaaaggacacacacactcatgttcatggcagcactattcacaatagcagagacatagacccaacctaggtgcccatcagtggtggattggatagagacaatgtggAGTTCCGGCAGAGACCCGGGTGAGACGCGCTGACCATGGGCCTGCGGAGGGGCTGGGGGTTCAGGACCT-CCGCAGCCTCTGCCCTGCGGGCTCCAGGTGCCCTCGCTGTGGCTCCCCTCGCGGGCCCAGGCCTGAAGAAGCCGCGAACCTCTCTTCCCTACCCCACCTCGGTGACTGATGGCAGCTCCTCTCTCAGCCCAGACCCCGCCGGCCTCCATGTCTCCCGGCCCAGCCCTGCGGGGCCTAAACTAAGCCCCTGCCGAGCTGCTAGGATGCAGCGCATTTGAGTGGCTGCGGGCGTGGGGGGCCGGGAAGCATGGCGACCGCCCCAACTCGCAGCGGAGGCCGTTAGGGTGTGGAGGGCGCAGGAAGGCGGGTCGCCTGCCACTGGGGCGCGGGCAGATCTGACCGCTCTGTCCCAACTGGTCGAGACCGACCTAGTCCTGACGAC-AGGAACAACGGCATTAACAACGGCCGGAAGGTGAGCGGTGTCCCAGACAACGACGGATAGCGGCCACCTGGCCACTGGTCTTCCTTCTCTACCAGACCTGGATGTGGGAAGAGACAAGTGGTGGAACAACAGGCCACAtttggcgtattggag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29644954 1413 + 173848474 AAAAATTAAGGCTTTCATGCTATCTATATCTACTACACAAAGTCAAAAGTCAAATAGAGCTTACAATGTGGCAAAAT---------ATTTCTAACTTCTGTGACATTAGTTGCTTCACCTCAACTCAATACTTATCATCTTATCTTTATACAAACTCAAATGCTAGTTATCTTTACTATCCATAAATACAaattaaactaaggagcttccgcacagcaaaagaaactataaatagaataaacagacaacttacggaaggtgaaaaaagattcacaaactatgcatacaacaaaggtctaatatccagaatctataaggaacttaaatcaac-----aaacataaccccattaaaaaattaacaaatgacaaaggatgaacagacacttctcaaaagaaaacataaaggtgaccaataaacatatggaaaaaattgttcatcattactaatcatcagagaaatgcaaatcaaaaccacaatgagattccatctcacaccagtcagaatggctgctatttaaaagtcaaaaaacaacagatattgcggaggctgcagagaaacgcgaacgctt-atacactgttggtgagaatgaacattagttcagccactgtggaaagcagtttggagaattt-tccaaaagaactaaaaacagagctaccattggacccagcaattccattaccgcgtatttagtcaaaggaaaatatatcattataccaaaaggacacacacactcatgttcatggcagcactattcacaatagcagagacatagacccaacctaggtgcccatcagtggtggattggatagagacaatgtggAGTTCCGGCAGAGACCCGGGTGAGACGCGCTGACCATGGGCCTGCGGAGGGGCTGGGGGTTCAGGACCT-CCGCAGCCTCTGCCCTGCGGGCTCCAGGTGCCCTCGCTGTGGCTCCCCTCGCGGGCCCAGGCCTGAAAAAGCCGCGAACCTCTCTTCCCTACCCCACCTCGGTGACTGATGGCAGCTCCTCTCTCAGCCCAGACCCCGCCGGCCTCCATGTCTCCCGGCCCAGCCCTGCGGGGCCTAAACTAAGCCCCTGCCGAGCTGCTAGGATGCAGCGCATTTGAGTGGCTGCGGGCGTGGGGGGCCGGGAAGCATGGCGACCGCCCCAACTCGCAGCGGAGGCCGTTAGGGTGTGGAGGGCGCAGGAAGGCGGGTCGCCTGCCACTGGGGCGCGGGCAGATCTGACCGCTCTGTCCCAACTGGTCGAGACCGACCTAGTCCTGACGAC-AGGAACAACGGCATTAACAACGGCCGGAAGGTGAGCGGTGTCCCAGACAACGACGGATAGCGGCCACCTGGCCACTGGTCTTCCTTCTCTACCAGACCTGGATGTGGGAAGAGACAAGTGGTGGAACAACAGGCCACAtttggcgcattggag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5431667 1413 +   6154872 AAAAATTAAGGCTTTCATGCTATCTATATCTACTACACAAAGTCAAAAGTCAAATAGAGCTTACAATGCGGCAAAAT---------ATTTCTAACTTCTGCGACATTAGTTGCTTCACCTCAACTCAATACTTATCATCTTATCTTTATACAAACTCAAATGCTAGTTATCTTTACTATCCATAAATACAaattaaactaaggagcttccgcacagcaaaagaaactatcaatagaataaacagacaacttacggaaggtgagaaaagattcacaaactatgcatacaacaaaggtctaatatccagaatctataaggaacttaaatcaac-----aaacataaccccattaaaaaattaacaaatgacaaaggatgaacagacacttctcaaaagaagacataaaggtgaccaataaacatatggaaaaaattgttcatcattactaatcatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagtcagaatggctgctatttaaaagtcaaacaacaacagatattgcggaggctgcagagaaacgcgaacgctt-atacactgttggtgagaatgaacattagttcagccactgtggaaagcagtttggagaattt-tccaaaagaactaaaaacagagctaccattggacccagcaattccattaccgcgtatttagtcaaaggaaaatatatcattataccaaaaggacacacgcactcatgttcatggcagcactattcacaatagcagagacatagacccaacctaggtgcccatcagtggtggattggatagagacaatgtggAGTTCCGGCAGAGACCCGGGTGAGACGCGCTGACCATGGGCCTGCGGAGGGGCTGGGGTTTCAGGACCT-CCGCAGCCTCTGCCCTGCAGGCTTCAGGTGCCCCCGCTGTGGCTCCCCTCGCGGGGCCAGGCCTGAAGAAGCCACGAACCTCTCTTCCCTACCCCACTTCGGTGACTGATGGCAGCTCCTCTCTCAGCCCAGACCCCGCCGGCCTCCATGTCTCCCGGCCCAGCCCTGCGGGGCCTAAACTAAGCCCCTGCCGAGCTGCTAGGATGCAGCGCATTTGAGTGGCTGCGGGCGTGGGAGGCCGGGAAGCATGGCGACCGCCCCAACTCGCAGCGGAGGCCATTAGGGTGTGGAGGGCGCGGGAAGGCGGGTCTCCTGCCACTGGGGCGCGGGCAGATCGGACCGCTCTGTCCCAACTGGTCGAGACCGACCTAGTCCTGACGAC-AGGAACAACGGCATTAACAACGGCCGGAAGGTGAGCGGTGTCCCAGACAATGACGGATAGCGGCCATCTGGCCACTGGTCTTCCTTCTCTACCAGACCTGGATGTGGGAAGAGAGAAGTGGTGGAACAACAGGCCACAtttggcgcattggag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             142985740 1416 - 172585720 AAAAATTAAGGCTTTCATGCTATCTATATCTACTACGCAAAGTCAAAAGTCAAATAGAGCTTACAATGCAGCAAAAT------ATTATTTCTAACTTCTGTGACATTAGCTGCTTCATCTCAGCTCAATACTTACTATCATATCTTTATACAAACTCAAATGCTAGTTATCTTTATTATCCATAAATACAaattaaactaaagaacttctgcacagcaaaagaaactagcagtagaataaacagacaacttacagaaggggagaaaagattcacaaactatgcatacaacaaaggtctaatatccagaatctataaggaacttaaatcaacaaacaaaacataaccccgttaaaaaattaacaaatgacaaaggatgaacagacacttctcaaaagaagacatacaggtgaccaataaacatat-gaaaaaattgttcatcatcactaatcatcagagaaatg-----caaaaccacagtgagataccatctcacaccagtcagaatggctgtcatttaaaagtcaaaaaacaacagatattgcagaggctgaagagaaacgcgaatgcttaatacacggttagtgagaatgaacattagttcagccactgtggaaagcagtttggagattttagtttgaagaactaaaaacagagctaccactggacccagcaattccattaccgcgtatttagtcaaaggaaaatatatcattataccaaaaggacacaggcactcatgttcatggcagcactattcacagtagcagagacatagacccaacctaggtgcccatcagtggtggattggatagacacaatgtggAGCTCTGGCAGAGACCCGGGTGAGACACGCTGACCCTGGGCCTGCGGAGGGGCTGGCGGTTCAGGACCTCCCACAGCCTCTGCCCTGCAGGCTCCAGGCGCCCTCCCTGTGGCTCCCCTCGTGGGCCCAGGCCTGAAGCAGCCGTGAACCTCTCTTCCCTACCCCACCTCCGTGACTGATGGCAGCTCCTCTCCCAGCCCAGCCCCCGCCGGCCTCCAGGTCTCCCGGCCCAGCCCTGCAGGGCCTAAACTAAGCCCCTGCCGAGCCGCTAGGATGCAGCGCATTTGGGTGGCGGCCGGAGTGGCGGGCCGGGAAGCATGGCGACCGCCTCAACTCGCAGCGGAGGCCATTAGAGTGTGGAGGGCGCGGGAAGACGGGTCGCCTGCCACCAGGGCGCGGGCAGATTGAACCGCTCTGTCGCAACCGGGCGAGACCGACCTAGTCCTGACGACAAGGCACAACGGCATT---AACGGCCGGAAGGTGAGCGGTGTCGCAGACAACGACGGATAGCGGCCATCTGGCCACTGGTCTTCCTTCTCTACCAGACCTGGAGGTGGGAAGAGAGAAGTGGTGGAACAACAGGCCACATTTGGCGCATTGGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             141693888 1416 + 170955103 AAAAATTAAGGCTTTCATGCTATCTATATCTACTACGCAAAGTCAAAAGTCAAATAGAGCTTACAATGCAGCAAAAT------ATTATTTCTAACTTCTGTGACATTAGCTGCTTCATCTCAGCTCAATACTTACTATCATATCTTTATACAAACTCAAATGCTAGTTATCTTTATTATCCATAAATACAaattaaactaaagaacttctgcacagcaaaagaaactagcagtagaataaacagacaacttacagaaggggagaaaagattcacaaactatgcatacaacaaaggtctaatatccagaatctataaggaacttaaatcaacaaacaaaacataaccccgttaaaaaattaacaaatgacaaaggatgaacagacacttctcaaaagaagacatacaggtgaccaataaacatat-gaaaaaattgttcatcatcactaatcatcagagaaatg-----caaaaccacagtgagataccatctcacaccagtcagaatggctgtcatttaaaagtcaaaaaacaacagatattgcagaggctgaagagaaacgcgaatgcttaatacacggttagtgagaatgaacattagttcagccactgtggaaagcagtttggagattttagtttgaagaactaaaaacagagctaccactggacccagcaattccattaccgcgtatttagtcaaaggaaaatatatctttataccaaaaggacacaggcactcatgttcatggcagcactattcacagtagcagagacatagacccaacctaggtgcccatcagtggtggattggatagacacaatgtggAGCTCTGGCAGAGACCCGGGTGAGACACGCTGACCCTGGGCCTGCGGAGGGGCTGGCGGTTCAGGACCTCCCACAGCCTCTGCCCTGCAGGCTCCAGGCGCCCTCCCTGTGGCTCCCCTCGTGGGCCCAGGCCTGAAGCAGCCGTGAACCTCTCTTCCCTACCCCACCTCCGTGACTGATGGCAGCTCCTCTCCCAGCCCAGCCCCCGCCGGCCTCCAGGTCTCCCGGCCCAGCCCTGCAGGGCCTAAACTAAGCCCCTGCCGAGCCGCTAGGATGCAGCGCATTTGGGTGGCGGCCGGAGTGGCGGGCCGGGAAGCATGGCGACCGCCTCAACTCGCAGCGGAGGCCATTAGAGTGTGGAGGGCGCGGGAAGACGGGTCGCCTGCCACCAGGGCGCGGGCAGATTGAACCGCTCTGTCGCAACCGGGCGAGACCGACCTAGTCCTGACGACAAGGCACAACGGCATT---AACGGCCGGAAGGTGAGCGGTGTCGCAGACAACGACGGATAGCGGCCATCTGGCCACTGGTCTTCCTTCTCTACCAGACCTGGAGGTGGGAAGAGAGAAGTGGTGGAACAACAGGCCACATTTGGCGCATTGGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1      724901 1421 +   2996164 AAAAATTAAGGCTTTCATGCTATCTATATCTACTACGCAAAGTCAAAAGTCAAATAGAGCTTACAATGCAGCAAAAT------ATTATTTCTAACTTCTGTGACATTAGCTGCTTCATCTCAACTCAATACTTACTATCATATCTTTATACAAACTCAAATGCTAGTTATCTTTATTATCCATAAATACAaattaaactaaagaacttctgcacagcaaaagaaactagcagtagaataaacagacaacttacagaaggggagaaaagattcacaaactatgcatacaacaaaggtctaatatccagaatctataaggaacttaaatcaacaaacaaaacataaccccattaaaaaattaacaaatgacaaaggatgaacagacacttctcaaaagaagacatacaggtgaccaataaacatat-gaaaaaattgttcatcatcactaatcatcagagaaatgcaaatcaaaaccacagtgagataccatctcacaccagtcagaatggctgtcatttaaaagtgaaaaaacaacagatattgcagaggctgaagagaaacgcgaacgcttaatacacggttagtgagaatgaacattagttcagccactgtggaaagcagtttggagattttagtttgaagaactaaaaacagagctaccactggacccagcaattccattaccgcgtatttagtcaaaggaaaatatatcattataccaaaaggacacaggcactcatgttcatggcagcactattcacagtagcagagacatagacccaacctaggtgcccatcagtggtggattggatagacacaatgtggAGCTCTGGCAGAGACCCGGGTGAGACACGCTGACCCTGGGCCTGCGGAGGGGCTGGCGGTTCAGGACCTCCCACAGCCTCTGCCCTGCAGGCTCCAGGCGCCCTCCCTGTGGCTCCCCTCGTGGGCCCAGGCCTGAAGCAGCCGTGAACCTCTCTTCCCTACCCCACCTCCGTGACTGATGGCAGCTCCTCTCCCAGCCCAGCCCCCGCCGGCCTCCAGGTCTCCCGGCCCAGCCCTGCAGGGCCTAAACTAAGCCCCTGCCGAGCCGCTAGGATGTAGCGCATTTGGGTGGCGGCCGGAGTGGCGGGCCGGGAAGCATGGCGACCGCCTCAACTCGCAGCGGAGGCCATTAGAGTGTGGAGGGCGCGGGAAGACGGGTCGCCTGCCACCAGGGCGCGGGCAGATTGAACCGCTCTGTCGCAACCGGGCGAGACCGACCTAGTCCTGACGACAAGGCACAACGGCATT---AACGGCCGGAAGGTGAGCGGTGTCGCAGACAACGACGGATAGCGGCCATCTGGCCACTGGTCTTCCTTCTCTACCAGACCTGGAGGTGGGAAGAGAGAAGTGGTGGAACAACAGGCCACATTTGGCGCATTGGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1       13115 1421 +   2157725 AAAAATTAAGGTGTTCATGCTATCCATATCTACTACACAAAGTCAAAAGTCGAATAGAGCTTACAATGTGGCAAAAT------ATTATTTCTAACTTCTATGACATTAGCTGCTTCATCTCAACTCAACACTTACTATCTCATCTTTATACAAACTCAAATGATAGTTATCTTTATTATCCATAAATACAaattaaactaaagaacttctgcacagcaaaagaaactagcaatagaataaacagacaacttacagaaggggagaaaagattcccaaactatgcatacaacaaaggtctaatatccagaatctataaggaacttaaatcaacaaacaaaacataaccccatttaaaaattaacaaatgacaaaggatgaacagacacttctcaaaagaagacatataggtgaccaataaacatat-gaaaaaattgttcgtcatcactaatcatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagtcagaatggctgtcatttaaaagtcaaaaaacaacagatattgcagaggctgaagagaaacgcgaacgcttaatacactgttggtgagaatgaacattagttcagccactgtggaaagcagtttggagatattagtttggagaactaaaaacagaaccaccactggacccagcaattccattaccgcgtatttagtcaaaggaaaatatatcattataccaaaaggacacacgcactcatgttcatggcagcactattcacagtagcagagacatagacccaacctaggtgcccatcggtggtggattggatagagacaatgtggAGTTCTGGCAGAGACCCGGGTGAGACACGCTGACCCTGGGCCTGCGGAGGGGCTGGCGGTTCAGGACCTCCCACAGCCTCTGCCCTGCAGGCTCCAGGCGCCCTCCCTGTGGCTCCCCTCGTGGGCCCAGGCCTGAAGCAGCCGTGAACCTCTCTTCCCTACCCCACCTCGGTGACTGATGGCAGCTCCTCTCCCAGCCCAGACCCCGCCGGCCTCCAGGTCTCCCGGCCCAGCCCTGCAGGGCCTAAACTAAGCCCCTGCCGAGCCGCTACGACGCAGCGCATTTGGGTGGCGGCCGGCGTGGCGGGCCGGGAAGCATGGCGACCGCCTCAACTCGCAGCGGAGGCTATTAGGGTGTGGAGGGCGCGGAAAGGCGGGTCGCCTGCCACCAGGGCGCGGGCAGATTGAACCGCTCTGTCGCAACCGAGCGAGACTGACCTAGTCCTGACGACAAGGGACAACGGCATT---AACGGCCGGAAGGTGAGTGGTGTCGCAGACAACGACGGATAGCGGCCATCTGGCCACTGGTCTTCCTTCTCTACCGGACCTGGAGGTGGGAAGAGAGAAGTGGTGGAACAACAGGCCACATTTGGCGCATTGGAG
i cerAty1.NW_012001495v1   I 173 n 173
s manLeu1.NW_012104165v1       28231 1421 -   2316924 AAAAATTAAGGTTTTCATGCTATCCATATCTACTACACAAAGTCAAAAGTCGAATAGAGCTTACAATGTGGCAAAAT------ATTATTTCTAACTTCTATGACATTAGCTGCTTCATCTCAACTCAACACTTACTATCTCATCTTTATACAAACTCAAATGCTAGTTATCTTTATTATCCATAAATACAaattaaactaaagaacttctgcacagcaaaagaaactagcaatagaataaacagacaacttacagaaggggagaaaagattcccaaactatgcatacaacaaaggtctaatatccagaatctataaggaacttaaatcaacaaacaaaacataaccccatttaaaaattaacaaatgacaaaggatgaacagacacttctcaaaagaagacatataggtgaccaataaacatat-gaaaaaagtgttcgtcatcactaataatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagtcagaatggctgtcatttaaaagtcaaaaaacaacagatattgcagaggctgaagagaaacgcgaacgcttaatacactgttggtgagaatgaacattagttcagccactgtggaaagcagtttggagattttagtttggagaactaaaaacagaactaccactggacccagcaattccattaccgcgtatttagtcaaaggaaaatctatcattataccaaaaggacacacgcactcatgttcatggcagcactattcacagtagcagagacatagacccaacctaggtgcccatcggtggtggactggatagagacaatgtggAGTTCTGGCAGAGACCCGGGTGAGACACGCTGATCCTGGGCCTGCGGAGGGGCTGGCGGTTCAGGACCTCCCACAGCCTCTGCCCCGCAGGCTCCAGGCGCCCTCCCTGTGGCTCCCCTCGTGGGCCCAGGCCTGAAGCAGCCGTGAACCTCTCTTCCCTACCCCACCTCGGTGACTGATGGCAGCTCCTCTCCCAGCCCAGACCCCGCCGGCCTCCAGGTCTCCCGGCCCAGCCCTGCAGGGCCTAAACTAAGCCCCTGCCGAGCCGCTACGACGCAGCGCATTTGGGTGGCGGCCGGCGTGGCGGGCCGGGAAACATGGCGACCACCTCAACTCGCAGCGGAGGCCATTAGGGTGTGGAGGGCGCGGGAAGGCGGGTCGCCTGCCACCAGGGCGCGGGCGTATTGAACCGCTCTGTCGCAACCGAGCGAGACCGACCTAGTCCTGACGACAAGGGACAACGGCATT---AACGGCCGGAAGGTGAGTGGTGTCGCAGACAACGACGGATAGCGGCCATCTGGCCACTGGTCTTCCTTCTCTACCGGACCTGGAGGTGGGAAGAGAGAAGTGGTGGAACAACAGGCCACATTTGGCGCATTGGAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1      939078 1427 +   3067355 AAAAATTAAGGTTTTTATGCTATCTATATCTACTACGCAAAGTCAAAAGTCAAATAGAGCTTACAATGCAGCAAAAGTTAGAAATTATTTCTAACTTCTGTGACATTAGCTGCTTCATCTCAACTCAATACTTACTATCTTATCTTTATACAAACTCAAATGCTAGTTATCTTTATTATCCATAAATACAaattaaactgaagaacttctgcacagcaaaagaaactagcaatagaataaacagacaacttacagaaggggagaaaagattcacaaactatgcatacaacaaaggtctaatatccagaatctatcaggaacttaaatcaacaaacaaaacataaccccattaaaaaattaacaaatgacaaaggatgaacagacacttctcaaaagaagacatacaggtgaccaataaacatat-gaaaaaactgttcattaccactaatcatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccggtcagaatggctgtcatttaaaagtcaaacaacaacagatattgcagaggctgaagagaaacgcgaacgcttaatacactgttggtgaaaatgaacattagttcagccactgtggaaagcagtttggagattttagtttggagaactaaaaacagagctaccactggacccagcaattccattaccgcgtatttagtcaaaggaaaatatatcattgtaccaaaaggacacacacgctcatgttcatggcagcactattcacagtagcagagacatagacccaacctaggtgcccatcagtgatggattggatagagacaatgtggAGTTCCGGCAGAGACCCGGGTGAGACACGCTGACCCTGAGCCTGCGGAGGGGCTGGGGGTTCAGGACCTCCCACAGCCTCTGCCCTGCAGGCTCCAGGCGCCCTCCCTGTGGCTCCCCTAGTGGGCCCAGGCCTGAAGCAGCTGTGAACCTTTCTTCCCTACCCCACCTCGGTGACTGATGGCAGCTCCTCTCCCAGCCCAGACCCCGCCGGCCTCCAGGTCTCCCGGCCCAGTCCTGCAGGGCCTAAACTAAGCCCCTGCCGAGCCGCTAGGATGCAGCGCATTTGGGTGGCGGCCGGCGTGGAGGGCCGGGAAGCATGGCGACCGCCTCAACTCGCAGCGGAGGCCATTAGGGTGTGGAGAGCGCGGGAAGGCGGGTCACCTGCCACCAGGGCGCAAGCAGATTGAACCGCTCTGTCCCAACTGGGCGAGACCGACCTAGTCCTGACGACAAGGGACAACGGCATT---AACGGCCAGAAGGTGAGTGGTGTCCCAGACAACGCCGAATAGCGGCCATCTGGCCACTGGTCTTCCTTCTCTACCAGACCTGGAGGTGGGAAGAGAGAAGTGGTGGAACAACAGGCCACATTTGGCACATTGGAG
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             43437155    0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=10152.000000
s hg38.chr6_GL000254v2_alt    426041 3 +   4827813 atg
s panTro5.chr6              29400662 3 + 175400573 atg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29646367 3 + 173848474 atg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5433080 3 +   6154872 atg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             142987156 3 - 172585720 ATG
i rheMac8.chr4             C 0 n 0
s macFas5.chr4             141695304 3 + 170955103 ATG
i macFas5.chr4             C 0 n 0
s macNem1.NW_012011356v1      726322 3 +   2996164 ATG
i macNem1.NW_012011356v1   C 0 n 0
s manLeu1.NW_012104165v1       29652 3 -   2316924 ATG
i manLeu1.NW_012104165v1   C 0 n 0
s colAng1.NW_012115566v1      940505 3 +   3067355 ATG
i colAng1.NW_012115566v1   C 0 N 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             43437155 0 +  71996105 I
e cerAty1.NW_012001495v1       14536 173 +   2157725 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=738283.000000
s hg38.chr6_GL000254v2_alt    426044 1322 +   4827813 aaattcttggttgaaaattcttttctttaagaatgttgaatattggcccccactctcttctggcttgtagggtttctgcagagagatatgctgttagtctgatgggcttccctttataggtaacctgacccttctctctggctgcccttaactttttttccttcatttcaagcttggagaatctgacaattacgtttcttggggttgcttttctcgagcagtatcttagtggtgttctc-gtatttcctgaatttgaatgttggcctgtattgctaccttgtggaagttctcctggataatatcctgaagctgttttccagcttggttccattcttctcgtcactttcaggtaaaccaatcaaacataagtttggtcttttcacatagtcccatatttcctggaggctttgtttgttccttttcattcttttttctctaatcttgtcttcacaccttatttcagtaagttggtcttcagtctctaatatcctttcttctgcttgatcgatttggctattgatccttgtgtatatcttacaaagttctcgtgctgtgtttttcagctcctcaggtcatttatgttctcctctaaactggctagtctagttagcagtttctgtaaccttttatcaaggttcttagcttccttgcattgggttagaacatgctcctttagctcagaggagtttgttattacacaccttgtgaagcctacttctgtcattcatcaatctccttctccagttttgtgcccttgctggagaggagttgagatcattttgagtagaagaggcattctggtttttggaattttcagcgtttttatgctagtttttcctcatctttgtggatttatctacctttgatctttgaggctgatgactttggatggggtttttgtgtgacggtcctttatgttgatgttgacgttgtttctgtttgttagttttccttataacagtcaggcccctcttctgcgggtctgctgcagtttgctggaagtgtactccagaccctgtttgcctgggtatcaccagcagaggctgtagaacagcaaagattgcttcctgctccttcctctggaagcttcgtcccagaagggcactggcctgatgacagctggagctctcctgtgtgaggttctgtcaacccctgttgggagttgtctcccagtcaggaggcatgggggttagggacccacttgaggagggagtgtgtcccttaagagaactggtgtgctgtgctgggagaatccctcttgtcaggatcagctgctgtcttcagagcaggcaggcaggaacgattaaatctgcttgtgctgt
s panTro5.chr6              29400665 1322 + 175400573 aaattcttggttgaaaattcttctctttaagaatgttgaatattggcccccactctcttctggcttgtagggtttctgcagagagatatgctgttagtctgatgggcttccctttataggtaacctgacccttctctctggctgcccttaactttttttccttcatttcaagcttggagaatctgacaattacgtttcttggggttgcttttctcgagcagtatcttagtggtgttctc-gtatttcctgaatttgaatgttggcctgtattgctaccttggggaagttctcctggataatatcctgaagctgttttccagcttggttccattcttctcgtcactttcaggtaaaccaatcaaacataagtttggtcttttcacatagtcccatatttcctggaggctttgtttgttccttttcattcttttttctctaatcttgtcttcacaccttatttcagtaagttggtcttcagtctctgatatcctttcttctgcttgatcgatttggctattgatccttgtgtatatcttacaaagttctcgtgctgtgtttttcagctcctcaggtcatttatgttctcctctaaactggctagtctagttagcagtttctgtaaccttttatcaaggttcttagcttccttgcattgggttagaacatgctcctttagctcagaggagtttgttattacacaccttgtgaagcctacttctgtcattcatcaatctccttctccagttttgtgcccttgctggagaggagttgcgatcattttgagtagaagaggcattctggtttttggaattttcagcgtttttatgctagtttttcctcatctttgtggatttatctacctttgatctttgaggctgatgactttggatggggtttttgtgtgacggtcctttatgttgatgttgacgttgtttctgtttgttagttttccttataacagtcaggcccctcttctgcgggtctgctgcagtttgctggaagtgtactccagaccctgtttgcctgggtatcaccagcagaggctgtagaacagcaaagatttcttcctgctccttcctctggaagcttcgtcccagaagggcactggcctgatgacagctggagctctcctgtgtgaggttctgtcaacccctgttgggagttgtctctcagtcaggaggcatgggggttagggacccacttgaggagggagtgtgtcccttgagagaactggtgtgctgtgctgggagaatccctcttgtcaggatcagctgctgtcttcagagcaggcaggcaggaacgattaaatctgcttgtgctgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29646370 1322 + 173848474 aaattcttggttgaaaattcttttctttaagaatgttgaatattggcccccactctcttctggcttgtagggtttctgcagagagatatgctgttagtctgatgggcttccctttataggtaacctgacccttctctctggctgcccttaactttttttccttcatttcaagcttggagaatctgacaattacgtttcttggggttgcttttctcgagcagtatcttagtggtgttctc-gtatttcctgaatttgaatgttggcctgtattgctaccttggggaagttctcctggataatatcctgaagctgttttccagcttggttccattcttctcgtcactttcaggtaaaccaatcaaacataagtttggtcttttcacatagtcccatatttcctggaggctttgtttgttccttttcattcttttttctctaatcttgtcttcacaccttatttcagtaagttggtcttcagtctctgatatcctttcttctgcttgatcgatttggctattgatccttgtgtatatcttacaaagttctcgtgctgtgtttttcagctcctcaggtcatttatgttctcctctaaactggctagtctagttagcagtttctgtaaccttttatcaaggttcttagcttccttgcattgggttagaacatgctcctttagctcagaggagtttgttattacacaccttgtgaagcctacttctgtcattcatcaatctccttctccagttttgtgcccttgctggagaggagttgcgatcattttgagtagaagaggcattctggtttttggaattttcagcgtttttatgctagtttttcctcatctttgtggatttatctacctttgatctttgaggctgatgactttggatggggtttttgtgtgacggtcctttatgttgatgttgacgttgtttctgtttgttagttttccttataacagtcaggcccctcttctgcgggtctgctgcagtttgctggaagtgtactccagaccctgtttgcctgggtatcaccagcagaggctgtagaacagcaaagatttcttcctgctccttcctctggaagcttcgtcccagaagggcactggcctgatgacagctggagctctcctgtgtgaggttctgtcaacccctgttgggagttgtctctcagtcaggaggcatgggggttagggacccacttgaggagggagtgtgtcccttgagagaactggtgtgctgtgctgggagaatccctcttgtcaggatcagctgctgtcttcagagcaggcaggcaggaacgactaaatctgcttgtgctgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5433083 1317 +   6154872 aaattcttggttgaaaattcttttctttaagaatgttgaatattggcccccactctcttctggcttgtagggtttctgcagagagatatgctgttagtctgatgggcttccctttataggtaacctgacccttctctctggctgcccttaacttttttcccttcatttcaagcttggagaatctgacaattacgtttcttggggttgcttttcttgagcagtatcttagtggtgttctctgtatttcctgaatttgaatgttggcctgtattgctaccttggggaagttctcctggataatatcctgaagctgttttccagcttggttccattcttctcgtcactttcaggtaaaccaatcaaacataagtttggtcttttcacatagtcccatatttcctggaggctttgttttttccttttcattcttttttctctaatcttgtcttcacaccttatttcagtaagttggtcttcagtctctgatatcctttcttctgcttgatcaatttggctattgatccttgtgtatattttacagagttctcgtgctgtgtttttcagctcctcaggtcatttatgttctcctctaaactggctagtctagttagcagtttctgtaaccttttatcaaggttcttagcttccttgcattgggttagaacatgctcctttagctcagaggagtttgtcattacacaccttgtgaagcctacttctgtcattcatcaatctccttctccagttttgtgcccttgctggagaggagttgcgatcattttgagtagaagaggcattctgggttttggaattttcagcatttttatgctagtttttcctcatctttgtggatttatctacctttgatctttgaggctgatgactttggatgtggtttttgtgtgagggtcctttatgttgat------gttgtttctgtttgttagttttccttacaacagtcaggcccctcttctgcgggtctgctgcagtttgctggaagtgtactccagaccccgtttgcctgggtatcaccagcagaggctgtagaacagcaaagattgcttcctgctccttcctctggaagcttcgtcccagaagggcactggcctgatgacagctggagctctcctgtgtgaggttctgtcaacccctgttgggagttgtctcccagtcaggaggcatgggggttagggacccacttgaggagggagtgtgtcccttaagagaactggtgtgctgtgctgggagaatccctcttgtcaggatcagctgctgtcttcagagcaggcaggcaggaacgattaaatctgcttgtgctgt
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1       29655    0 -   2316924 I
e chlSab2.chr17             43437155    0 +  71996105 I
e cerAty1.NW_012001495v1       14536  173 +   2157725 I
e macNem1.NW_012011356v1      726325    0 +   2996164 I
e macFas5.chr4             141695307    0 + 170955103 I
e rheMac8.chr4             142987159    0 - 172585720 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1500.000000
s hg38.chr6_GL000254v2_alt    427366 1 +   4827813 g
s panTro5.chr6              29401987 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29647692 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5434400 1 +   6154872 g
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012001495v1     2139652 1 -   2157725 g
i cerAty1.NW_012001495v1   I 5841 C 0
s manLeu1.NW_012104165v1     2283724 1 +   2316924 g
i manLeu1.NW_012104165v1   I 7149 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             43437155 0 +  71996105 I
e macNem1.NW_012011356v1      726325 0 +   2996164 I
e macFas5.chr4             141695307 0 + 170955103 I
e rheMac8.chr4             142987159 0 - 172585720 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=2663089.000000
s hg38.chr6_GL000254v2_alt    427367 845 +   4827813 cccacagccacctcttccccaggtgctctgtcccagggagatgggggttttgtctgtaagcctctgactggggctgttacctttctttcagagatgccctgcccagtgagggggaatctagagaagcagtctggccacagctgctttgctgcactgtgatgaatttgccagtccatacctccgagactccttggaactgtca-gggaaaatggcctactaaagcctcagtaatggcagacgtccctcatcccatgaagctcaattgtcctaggttgacttcagactgctgtgctggcagtgagaatttcaagccagtggttcttagcttgctaggttctgtgggagtgggacctgctgagcgagaccacttggctccctggcttcagcctcctttcca-ggggagtaaatggttctgtctcgctggggttccaggcatcactagggtaggaaaaatactccttcatctagctctgtgtctgcccaaatggccacccagttttgtgcttgaaacctaaggccctggtggtgtaggcacacaagggaatctcctgatctacagattgcaaaaaccatgggaaaagtgtagtaacaagctaggcagcactgtccctcatggc-tcccctggctcggggaaagaggtcccctggcctcttgaacttcctgggt-aagcaactccccacccttcttctgcttgccctccatgggtttgacctgctgcctaaccagtcctaatgagaggaacggggtacctcagttggaaatgcagaaatcacctgccatctggattggtcttgctgggagctgcaaaccagaactgctcctatttggccgtcttCGGCTTCATC
s panTro5.chr6              29401988 845 + 175400573 cccacagccacctcttccccaggtgctctgtcccagggagatgggggttttgtctgtaagcctctgactggggctgttacctttctttcagagatgccctgcccagtgagggggaatctagagaagcagtctggccacagctgctttgctgcactgtgatgaattcgccagtccatacctccaagactccttggaactgtca-gggaaaatggcctactaaagccttagtaatggcagacgtccctcatcccatgaagctcaattgtcctaggttgacttcagactgctgtgctggcagtgagaatttcaagccagtggttcttagcttgctaggttccgtgggagtgggacctgctgagcgagaccacttggctccctggcttcagcctcctttcca-ggggagtaaatggttctgtctcgctggggttccaggcatcactagggtaggaaaaatgctccttcatctagctctgtgtctgcccaaatggccacccagttttgtgcttgaaacctagggccctggtggtgtaggcacacaagggaatctcctgatctacagattgcaaaaaccatgggaaaagtgtagtaacaggctaggcagcactgtccctcatggc-ttccctggctcggggaaagaggtcccctggcctcttgaacttcctgggt-aagcaactccccacccttcttctgcttgccctccatgggtttgacctgctgcctaaccagtcctaatgagaggaacggggtacctcagttggaaatgcagaaatcacctgccatctggattggtcttgctgggagctgcaaaccagaactgctcctatttggccatcttCGGCTTCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29647693 846 + 173848474 cccacagccacctcttccccaggtgctctgtcccagggagatgggggttttgtctgtaagcctctgactggggctgttacctttctttcagagatgccctgcccagtgagggggaatctagagaagcagtctggccacagctgctttgctgcactgtgatgaattcgccagtccatacctccaagactccttggaactgtca-gggaaaatggcctactaaagccttagtaatggcagacgtccctcatcccatgaagctcaattgtcctaggttgacttcagactgctgtgctggcagtgagaatttcaagccagtggttcttagcttgctaggttccgtgggagtgggacctgctgagcgagaccacttggctccctggcttcagcctcctttcca-ggggagtaaatggttctgtctcgctggggttccaggcatcactagggtaggaaaaatgctccttcatctagctctgtgtctgcccaaatggccacccagttttgtgcttgaaacctagggccctggtggtgtaggcacacaagggaatctcctgatctacagattgcaaaaaccatgggaaaagtgtagtaacaggctaggcagcactgtccctcatggcttcccctggctcggggaaagaggtcccctggcctcttgaacttcctgggt-aagcaactccccacccttcttctgcttgccctccatgggtttgacctgctgcctaaccagtcctaatgagaggaacggggtacctcagttggaaatgcagaaatcacctgccatctggattggtcttgctgggagctgcaaaccagaactgctcctatttggccatcttCGGCTTCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5434401 847 +   6154872 cccacagccacctcttccccaggtgctctctcccagggagatgggggttttgtctgtaagcctctgactggggcttttacctttctttcagagatgccctgcccagtgagggggaatctagagaagcagtctggccacagctgctttgctgcactgtgatgaattcgccagtccatacctccgagactccttggaactgtcaggggaaaatggcctactaaagccttagtaatggcagacgtccctcatcccatgaagctcaattgtcctaggttgacttcagactgctgtgctggcagtgagaatttcaagccagtggttcttagcttgctaggttccgtgggagtgggacctgctgagcgagaccacttggctccctggcttcagcctcctttcca-ggggagtaaatggttctgtctcactggggttccaggcatcactagggtaggaaaaatactccttcatctagctctgtgtctgcccaaatggccacccagttttgtgcttgaaacctagggccctggtggtgtaggcacacaagggaatctcctgatctgcagattgcaaaaaccatgggaaaagtgtagtaacaggctaggcagcactgtccctcatggcttcccctggctcggggaaagaggtcccctggcctcttgaacttcctgggt-aagcaactccccacccttcttctgcttgccctccatgggtttgacctgctgcctaaccagtcctaatgagaggaacggggtacctcagttggaaatgcagaaatcacctgccatctggattggtcttgctaggagctgcaaaccagaactgctcctatttggccatcttCGGCTTCATC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29594701 848 + 172585720 cccacagccacctcttccccagatgctctgtcccaggcagatgggggttttgtctgtaagcctctgactggggctgttacctttctttcagagataccctgcccagtgagggggaatctagggaagcagtctggccacagctgctttgctgcactgtggtgaatttgccagtctgcatctcccagactccttagaactgtca-ggggaaaacgcttactaaagcattagtaatggcagacgccattcaccccaccaagctcaattgtcccaggttgacttcagactgctgtgctggcagtgagaatttcaagccagtggttcttagcttgctaggctccgtgggagtgggacctgctgagcgagaccacttgactccctggcttcagcctcctttccagggggagtaaatagttctctctcgctggggttccaggcatcactggggtaggaaaaatattcctgcatctagctctgtgtctgcccaaacagccacccagttttgtgcttgaaacctagggccctggtggtgtaggcatacgagggaatctcctgatctgcagattgcgaaaaccatgggaaaagtgtagtaacaggctgggcagcactgtccctcatggcttcccccggttcggggagggaggtcccctggcctcttgaacttctcaggtgaggcaatgccccacccttcttctgcttgccccccatggttttgaccttctgtctaaccagtcccaatgagaggaacagggtacctcagttagaaatgcagaaattacctgccttctggattagtcttgctgggagctgcagaccagaagtgttcctatttggccatcttTGGCTGCATC
i rheMac8.chr4             T 79614 C 0
s macFas5.chr4              29255936 848 - 170955103 cccacagccacctcttccccagatgctctgtcccaggcagatgggggttttgtctgtaagcctctgactggggctgttacctttctttcagagataccctgcccagtgagggggaatctagagaagcagtctggccacagctgctttgctgcactgtggtgaatttgccagtctgcatctcccagactccttagaactgtca-ggggaaaacgcttactaaagcattagtaatggcagacgccattcaccccaccaagctcaattgtcccaggttgacttcagactgctgtgctggcagtgagaatttcaagccagtggttcttagcttgctaggctccgtgggagtgggacctgctgagcgagaccacttgactccctggcttcagcctcctttccagggggagtaaatagttctctctcgctggggttccaggcatcactggggtaggaaaaatattcctgcatctagctctgtgtctgcccaaacagtcacccagttttgtgcttgaaacctagggccctggtggtgtaggcatacgagggaatctcctgatctgcagattgcgaaaaccatgggaaaagtgtagtaacaggctgggcagcactgtccctcatggcttcccccggttcggggagggaggtcccctggcctcttgaacttctcaggtgaggcaatgccccacccttcttctgcttgccccccatggttttgaccttctgtctaaccagtcccaatgagaggaacagggtacctcagttggaaatgcagaaattacctgccttctggattagtcttgctgggagctgcagaccagaagtgttcctatttggccatcttTGGCTGCATC
i macFas5.chr4             T 81325 C 0
s macNem1.NW_012011356v1     2265988 848 -   2996164 cccacagccacctcttccccagatgctctgtcccaggcagatgggggttttgtctgtaagcctctgactggggctgttacctttctttcagagatactctgcccagtgagggggaatctagagaagcagtctggccacagctgctttgctgcactgtggtgaatttgccagtctgcatctcccagactccttagaactgtca-ggggaaaacgcttactaaagcattagtaatggcagacgccattcaccccaccaagctcaattgtcccaggttgacttcagactgctgtgctggcagtgagaatttcaagccagtggttcttagcttgctaggctccgtgggagtgggacctgctgagcgagaccacttgactccctggcttcagcctcctttccagggggagtaaatagttctctctcgctggggttccaggcatcactggggtaggaaaaatattcctgcatctagctctgtgtctgcccaaacagccacccagttttgtgcttgaaacctagggccctggtggtgtaggcatacgagggaatctcctgatctgcagattgcgaaaaccatgggaaaagtgtagtaacaggctgggcagcactgttcctcatggcttcccccggttaggggagggaggtcccctggcctcttgaacttctcaggtgaggcaatgccccacccttcttctgcttgccccccatggttttgaccttctgtctaaccagtcccaatgagaggaacagggtacctcagttggaaatgcagaaattacctgccttctggattagtcttgctgggagctgcagaccagaagtgttcctatttggccatcttTGGCTGCATC
i macNem1.NW_012011356v1   T 76545 C 0
s cerAty1.NW_012001495v1     2139653 846 -   2157725 cccacagccacctcttccccaggtgctctgtcccaggcagatgggggttttgtttgtaagcctctgactggggctgttacctttctttcagagatgccctgcccagtgagggggaatctagagaagcagtctggccacagctgctttgctgcactgtggtgaatttgccagtctgcatctcccagactccttagaactgtca-ggggaaaacgcttactaaagcattagtaatggcagatgccatt-accctaccaagctcaattgtcccaggttgacttcagactgctgtgctggcagtgagaatttcaagccagtggttcttagcttgctaggctccgtgggagtgggacctgctgagcgagaccacttgactccctggcttcagcctcctttcca-ggggagtaaatagttctgtctcgctggggttccaggcatcactggggtaggaaaaatattcctgcatctagctctgtgtctgcccaaacagccacccagttttgtgcttgaaacctagggccctggtggtgtaggcatacgagggaatctcctgatctgcagattgcaaaaaccatggaaaaagtgtagtaacagactgggcagcactgtccctcatggcttcctctggttcggggagggaagttccctggcctcttgaacttctcaggtgaagcaacgccccacccttcttctgcttgccctccgtggttttgaccttctgtctaacaagtcccaatgagaggaacagggtacctcagttggaaatgcagaaattacctgccttctggattagtcttgctgggagctgcagaccagaagtgttcctatttggccatcttCGGCTGCATC
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2283725 846 +   2316924 cccacagccacctcttccccagatgctctgtcccaggcagatgggggttttgtctgtaagcctctgactggggctgttacctttctttcagagacgccctgcccagtgagggggaatctagagaagcagtctggccacagctgctttgctgcactgtggtgaatttgccagtctgcatctcccagactccttagaactgtca-ggggaaaacgcttactaaagcattagtaatggcagatgccact-accctaccaagctcaattgtcccagattgacttcagactgctgtgctggcagtgagaatttcaagccagtggttcttagcttgctaggctccgtgggagtgggacctgctgagcgagaccacttgactccctggcttcagcctcctttcca-ggggagtaaatagctctgtctcgctggggttccaggcatcactggggtaggaaaaatattcctgcatctagctctgtgtctgcccaaacagccacccagttttgtgcttgaaacctagggccctggtggtgtaggcatatgagggaatctcctgatctgcagattgcaaaaaccatggaaaaagtgtagtaacagactgggcagcactgtccctcatggcttcccctggttcggggagggaggtcccctggcctcttgaacttctcaggtgaagcaatgccccacccttcttctgcttgccatccgtggttttgaccttctgtctaacaagtcccaatgagaggaacagggtacctcagttggaaatgcagaaattacctgccttctggattagtcttgctgggagctgcagaccagaagtgttcctatttggccatcttCGGCTGCATC
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             43437155   0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=194366.000000
s hg38.chr6_GL000254v2_alt    428212 53 +   4827813 CTTTTGTGTTTTTAAGAACAGTCCTCCCTGTGAATTTTACC-AAAAAGTGTACT
s panTro5.chr6              29402833 53 + 175400573 CTTTTGTGTTTTTAAGAACAGTCTTCCCTATGAATTTTACC-AAAAAGTGTACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29648539 53 + 173848474 CTTTTGTGTTTTTAAGAACAGTCTTCCCTATGAATTTTACC-AAAAAGTGTACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5435248 53 +   6154872 CTTTTGTGTTTTTAAGAACAGTCTTCCCTATGAATTTTACC-AAAAAGTGTACT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29595549 54 + 172585720 TTTCTGTGTTTTTAAGAACAGTCTTCCCTATGAATTTTACCAAAAAAGTGTGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29256784 54 - 170955103 TTTCTGTGTTTTTAAGAACAGTCTTCCCTATGAATTTTACCAAAAAAGTGTGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2266836 54 -   2996164 TTTCTGTGTTTTTAAGAACAGTCTTCCCTATGAATTTTACCAAAAAAGTGTGCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2140499 54 -   2157725 ATTCTGTGTTTTTAAGAACGGTCTTCCCTATGAATTTTACCAAAAAAGTGTGCT
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2284571 54 +   2316924 ATTCTGTGTTTTTAAGAACGGTCTTCCCTATGAATTTTACCAAAAAAGTGTGCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2022763 53 -   3067355 CTTTTGTGTTTTTAAGAACAGTCTTCCCTATGAATTTTAAC-ACAAAGTGTACT
i colAng1.NW_012115566v1   N 0 I 51
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             43437155  0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=211180.000000
s hg38.chr6_GL000254v2_alt    428265 68 +   4827813 CAGTACAGTAGTTTACTAACTCTACTTTTGTCATACACTAGAAACATCTTAATATCTACAAAGACTAG
s panTro5.chr6              29402886 68 + 175400573 CAGTACAGTAGTTTACTAACTCTACTTTTGTCATACACTAGAAACATCTTAATATCTACAAAGACTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29648592 68 + 173848474 CAGTACAGTAGTTTACTAACTCTACTTTTGTCATACACTAGAAACATCTTAATATCTACAAAGACTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5435301 68 +   6154872 CAGTACAGTAGTTTACTAACTCTACTTTTGTCATACACTAGAAACATCTTAATATCTACAAAGACTAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29595603 68 + 172585720 CAGTGTAGTAGTTTACTAACTCTACTTTTGTCATACACTAGAAACCTCTTAATATCTACAAAAACAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29256838 68 - 170955103 CAGTGTAGTAGTTTACTAACTCTACTTTTGTCATACACTAGAAACCTCTTAATATCTACAAAAACAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2266890 68 -   2996164 CAGTGTAGTAGTTTACTAACTCTACTTTTGTCATACACTAGAAACCTCTTAATATCTACAAAAACAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2140553 68 -   2157725 CAGTGTAGTAGTTTACTAACTCTACTTTTGTTATTCACTAGAAACCTCTTAATATCTACAAAAACTAG
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2284625 68 +   2316924 CAGTGTAGTAGTTTACTAACTCTACTTTTGTCATACACTAGAAACCTCTTAATATCTACAAAAACTAG
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e colAng1.NW_012115566v1     2022816 51 -   3067355 I
e chlSab2.chr17             43437155  0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1297072.000000
s hg38.chr6_GL000254v2_alt    428333 353 +   4827813 ATGTTGAAAATTAGGACTAATTTGTCCACTTATATGCACTATATACACAGCACAGTAAAAGAAAATGCAGACATAAGGGACAATGGTAAAGTGTGCCTCACCATAAACACACTGGTATTTGAATTACCCTTTGCCCTTTCTGCTCCTCTTTCCTCCCTGAGCCAACACACATATAGT-AATGTGTACTGCTCAGATA-AGTGGTTTGATCCATTTCCCAAAGACAATATTTCATATGAATCAAAAGGATATCTACAAA--GTGTTATTTACTCCCTCTACTTTTAACATACTTTGTGCACTTCT--------AGAAAGACTAAATGTTTCAAATAAGGACTTAAATTTGTCCACTATATACACAG
s panTro5.chr6              29402954 353 + 175400573 ATGTTGAAAATTAGGACTAATTTGTCCACTTATATGCACTATATACACAGCACAGTAAAAGAAAATGCAGACATAAGGGACAATGGTAAAGTGTGCCTCACCATAAACACACTGGTGTTTCAATTACCCTTTGCCCTTTCTGCTCCTCTTTCCTCCCTGAGCCAACACACATATAGT-AATGTGTACTGCTCAGATA-AGTGGTTTGATCCATTTCCCAAAGACAATATTTCATATGAATCAAAAGGATATCTACAAA--GTGTTATTTACTCCCTCTACTTTTAACATACTTTGTGCACTTCT--------AGAAAGACTAGATGTTTCAAATAAGGACTTAAATTTGTCCACTATATACACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29648660 353 + 173848474 ATGTTGAAAATTAGGACTAATTTGTCCACTTATATGCACTATATACACAGCACAGTAAAAGAAAATGCAGACATAAGGGACAATGGTAAAGTGTGCCTCACCATAAACACACTGGTGTTTCAATTACCCTTTGCCCTTTCTGCTCCTCTTTCCTCCCTGAGCCAACACACATATAGT-AATGTGTACTGCTCAGATA-AGTGGTTTGATCCATTTCCCAAAGACAATATTTCATATGAATCAAAAGGATATCTACAAA--GTGTTATTTACTCCCTCTACTTTTAACATACTTTGTGCACTTCT--------AGAAAGACTAGATGTTTCAAATAAGGACTTAAATTTGTCCACTATATACACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5435369 353 +   6154872 ATGTTGAAAATTCGGACTAATTTGTCCACTTATATGCACTATATACACAGCACAGTAAAAGAAAATGCAGACATAAGGGACAATGGTAAAGTGTGCCTCACCATAAACACACTGGTATTTCAATTACCCTTTGCCCTTTCTGCTCCTCTTTCCTCCCTGAGCCAACACACATATAGT-AATGTGTACTGCTCAGATA-AGTGGTTTGATCCATTTCCCAAAGACAATATTTCATATGAATCAAAAGGATATCTACAAA--GTGTTATCTACTCCCTCTACTTTTAACATACTTTGTGCACTTCT--------AGAAAAACTAGATGTTTCAAATAAGGACTTAAATTTGTCCACTATATACACAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29595671 359 + 172585720 ATGTTGAAAATTAGGACTTATTTGTCCACTTACATGCACTATATACACAGCACAGTAAAATAAAATGCAGACATAAGGGACAATGGTAAAGTATGCCTCACTGTAAACACACTGGTATTTCAATTACCCTCTGCACTTTCTGCTCCTCCTTCCTCCCTGAGCCAGCA-ACATATAAT-AATGTGTACTGCTCA-ATG-AGTGGTTTGATCCATTTCCCAAAGACAATATTTCATATGAATCAAAAGGATATCTACTAA--GTGTTTTTTACTACCTCTACTTTTAACATACTTTGTGCACTTCTAAACAACTAGAAAGACTACATGTTTCAAATAAGGACTTAAATTTGTCCACTATATACGCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29256906 359 - 170955103 ATGTTGAAAATTAGGACTTATTTGTCCACTTACATGCACTATATACACAGCACAGTAAAATAAAATGCAGACATAAGGGACAATGGTAAAGTATGCCTCACTGTAAACACACTGGTATTTCAATTACCCTCTGCACTTTCTGCTCCTCCTTCCTCCCTGAGCCAGCA-ACATATAAT-AATGTGTACTGCTCA-ATG-AGTGGTTTGATCCATTTCCCAAAGACAATATTTCATATGAATCAAAAGGATATCTACTAA--GTGTTTTTTACTACCTCTACTTTTAACATACTTTGTGCACTTCTAAACAACTAGAAAGACTACATGTTTCAAATAAGGACTTAAATTTGTCCACTATATACGCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2266958 359 -   2996164 ATGTTGAAAATTAGGACTTATTTGTCCACTTACATGCACTATATACACAGCACAGTAAAATAAAATGCAGACATAAGGGACAATGGTAAAGTATGCCTCACTGTAAACACACTGGTATTTCAATTACCCTCTGCACTTTCTGCTCCTCCTTCCTCCCTGAGCCAGCA-ACATATAAT-AATGTGTACTGCTCA-ATG-AGTGGTTTGATCCATTTCCCAAAGACAATATTTCATATGAATTAAAAGGATATCTACTAA--GTGTTTTTTACTACCTCTACTTTTAACATACTTTGTGCACTTCTAAACAACTAGAAAGACTACATGTTTCAAATAAGGACTTAAATTTGTCCACTATATACGCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2140621 349 -   2157725 ATGTTGAAAATTAGGACCCATTTGTCCACTTACATGCACTATATACACAGCACAGTAAAATAAAATGCAGACATAAGGGACAATGGTAAAGTATGCCTCACCGTAAACACACTGGTATTTCAATTACCCTCTGCACTTTCTGCTCCTCCTTCCTCCCTGAGCCAACA-ACATATAAT-AATGTGTACTGCTCA-ATG-AGTGGTTTGATCCATTTCCCAAAGACAATATTTCATATGAATCAAAAGGATATCTACTAA--GTGTTATTTACTACCTCTACTTTTAACATACTTTGTGCACTTCT----------TAAGACTACATGTTGCAAATAAGGACTTAAATTTGTCCGCTATATACGCAT
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2284693 349 +   2316924 ATGTTGAAAATTAGGACTCATTTGTCCACTTACATGCACTATATACACAGCACAGTAAAATAAAATGCAGACATAAGGGACAATGGTAAAGTATGCCTCACCGTAAACACACTGGTATTTCAATTACCCTCTGCACTTTCTGCTCCTCCTTCCTCCCTGAGCCAACA-ACATATAAT-AATGTGTACTGCTCA-ATG-AGTGGTTCGATCCATTTCCCAAAGACAATATTTCATATGAATCAAAAGGATATCTACTAA--GTGTTATTTACTACCTCTACTTTTAACATACTTTGTGCACTTCT----------AAAGACTACATGTTGCAAATAAGGACTTAAATTTGTCCACTATATACGCAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2022867 360 -   3067355 ATGTTGTAAATTAGGACTCGTTTGTCCACTTACATACACTACATACACAGCATAGTAAAAGAAAATGCAGACACAAGGGACAATGGTCAAGTGTGCCTCACCATAAGCACACTGGTATCTCAATTACCCTTTGCACTTTCTGCTCCTTCTTCCTTCCCAAACCAGCACAAATATAATAAATGTGTACTGCTCA-GGGAAGTGATTTGATCAATTTCCAAAAGACAATATTTCATATGAATTAAAAGCGTATCTACAAAATGTGTTATTTACTACCTCTACTTTTAACA----CTGTGCACTTCTAAACATCTAGAAAGACTAGGTGTTTCAAATAGGGACTTCAGTCTGTCCACCATATACATAG
i colAng1.NW_012115566v1   I 51 I 26
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             43437155   0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=10152.000000
s hg38.chr6_GL000254v2_alt    428686 3 +   4827813 GTA
s panTro5.chr6              29403307 3 + 175400573 GTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29649013 3 + 173848474 GTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5435722 3 +   6154872 GTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29596030 3 + 172585720 GTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29257265 3 - 170955103 GTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2267317 3 -   2996164 GTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2140970 3 -   2157725 GTA
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2285042 3 +   2316924 GTA
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e colAng1.NW_012115566v1     2023227 26 -   3067355 I
e chlSab2.chr17             43437155 0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=716872.000000
s hg38.chr6_GL000254v2_alt    428689 191 +   4827813 ACAATGGTTATATCTGAAAGTGTCTTCTAAATAGGAACATTCTGGTCTAAAATCTTTCATTCCTTCTAACTCCTCTCTACCACCAACCTAGTGGATATAGGCATATGTGTCATTTAGAACTGATGTTATCATTTCACTTCCAAAAGTCCTTTTCAGAAGATAGCCTTTCTATGAATTTCAACAAAGTGTAC
s panTro5.chr6              29403310 191 + 175400573 ACAATGGTTATATCTGAAAGTGTCTTCTAAATAGGAACATTCTGGTCTAAAATCTTTCATTCCTTCTAACTCCTCTCTACCACCAACCTAGTGGATATAGGCATATGTGTCATTTAGAACTGATGTTATCATTTCACTTCCAAAAGTCCTTTTCAGAAGACAGCCTTTCTATGAATTTCAACAAAGTGTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29649016 191 + 173848474 ACAATGGTTATATCTGAAAGTGTCTTCTAAATAGGAACATTCTGGTCTAAAATCTTTCATTCCTTCTAACTCCTCTCTACCACCAACCTAGTGGATATAGGCATATGTGTCATTTAGAACTGATGTTATCATTTCACTTCCAAAAGTCCTTTTCAGAAGACAGCCTTTCTATGAATTTCAACAAAGTGTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5435725 191 +   6154872 ACAATGGTTATATCTGAAAGTGTCTTCTAAATAGGAACATTCTGGTCTAAAATCTTTCATTCCTTCTAACTCCTCTCTACCACCAACCTAGTGGATATAGGCATATGTGTCATTTAGAACTGATGTTATCATTTCACCTCCAAAAGTCCTTTTCAGAAGACAGCCTTTCTATGAATTTCAACAAAGTGTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29596033 191 + 172585720 ACAATGGTTATATCTGAAAGTGTCTTCTAAATAGGAACATTCTGATCTAAAATCTTTCATTCCTTCTAACTCCTTTCCACCACGAACCTAGTGGATATGCGCATATGTGCCATTTAGAACTGATGTTATCATTTCACTTCCAAAAGTCCTTTTCAGAAGACAGCCTTTCTATGAATTTCAACAAAGTGTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29257268 191 - 170955103 ACAATGGTTATATCTGAAAGTGTCTTCTAAATAGGAACATTCTGATCTAAAATCTTTCATTCCTTCTAACTCCTTTCCACCACGAACCTAGTGGATATGCGCATATGTGCCATTTAGAACTGATGTTATCATTTCACTTCCAAAAGTCCTTTTCAGAAGACAGCCTTTCTATGAATTTCAACAAAGTGTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2267320 191 -   2996164 ACAATGGTTATATCTGAAAGTGTCTTCTAAATAGGAACATTCTGATCTAAAATCTTTCATTCCTTCTTACTCCTTTCCACCACGAACCTAGTGGATATGCGTATATGTGCCATTTAGAACTGATGTTATCATTTCACTTCCAAAAGTCCTTTTCAGAAGACAGCCTTTCTATGAATTTCAACAAAGTGTAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2140973 191 -   2157725 ACAATGGTTGTATCTGAAAGTGTCTTCTAAATAGGAACATTCTGATCTAAAGTCGTTCATTCCTTCTAACTCCTCTCCACCACGAACCTAGTGGATACACGCATATGTGTCATTTAGAACTGATGTTATCATTTCACTTCCTAAAGTCCTTTTCAGAAGACAGCCTTTCTATGAATTTCAACAAAGTGTAC
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2285045 191 +   2316924 ACAATGGTTATATCTGAAAGTGTCTTCTAAATAGGAACATTCTGATCTAAAATCGTTCATTCCTTCTAACTCCTCTCCACCACGAACCTAGTGGATATATGCATATGTGTCATTTAGAACTGATGTTATCATTTCACTTCCTAAAGTCCTTTTCAGAAGACAGCCTTTCTATGAATTTCAACAAAGTGTAC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2023253 167 -   3067355 ACAATGGTTATATCTGAAAGTGTCTTCTAAATAGGAATATTCTGGTCTAG---------------------CCTCTCCACCATCAACCTGGTGGATACAGGCACATGT--CACTTCGAGCTGATGTTATCATTTCACTTCCAAAAGTCCTTTCCA-AAGACAGCCTTTCTATGAATTTTAACAAAGTCTAC
i colAng1.NW_012115566v1   I 26 I 26
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             43437155   0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=69274.000000
s hg38.chr6_GL000254v2_alt    428880 34 +   4827813 AAAAATAGAGTTAGTAAACTAACTCTCATAAATT
s panTro5.chr6              29403501 34 + 175400573 AAAAATAGAGTTAGTAAACTAACTCTCATAAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29649207 34 + 173848474 AAAAATAGAGTTAGTAAACTAACTCTCATAAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5435916 34 +   6154872 AAAAATAGAGTTAGTAAACTAACTCTCATAAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29596224 23 + 172585720 AAAAAT--AGTTAGTAAACTAACTC---------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29257459 23 - 170955103 AAAAAT--AGTTAGTAAACTAACTC---------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2267511 23 -   2996164 AAAAAT--AGTTAGTAAACTAACTC---------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2141164 32 -   2157725 AAAAAT--AGTTAGTAAACTAACTCTCATAAATT
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2285236 32 +   2316924 AAAAAT--AGTTAGTAAACTAACTCTCATAAATT
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e colAng1.NW_012115566v1     2023420 26 -   3067355 I
e chlSab2.chr17             43437155  0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=633049.000000
s hg38.chr6_GL000254v2_alt    428914 170 +   4827813 GTTATAAATTGGCAACCTCTTTAATATCTAGAGACTAGACTAGATATTATAAAATTAAGACTACTTCATCCAGTATACACACAATATATACAGTATAGCAAAGTTAAATGCAATGCATGTAACATATAGGTAATGGATTAAGCTGAAATTTTCTAGTAAACATTAGCAAA
s panTro5.chr6              29403535 170 + 175400573 GTTATAAATTGGCAACCTCTTTAATATCTAGAGACTAGACTAGATATTATAAAATTAAGACTACTTCATCCAGTATACACACAATATATACAGTATAGCAAAGTTAAATGCAATGCATGTAACATATAGGTAATGGATTAAGCTGAAATTTTCTAGTAAACATTAGCAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29649241 170 + 173848474 GTTATAAATTGGCAACCTCTTTAATATCTAGAGACTAGACTAGATATTATAAAATTAAGACTACTTCATCCAGTATACACACAATATATACAGTATAGCAAAGTTAAATGCAATGCATGTAACATATAGGTAATGGATTAAGCTGAAATTTTCTAGTAAACATTAGCAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5435950 170 +   6154872 GTTATAAATTGGCAACCTCTTTAATATCTAGAGACTAGACTAGATATTATAAAATTAAGACTACTTCATCCAGTATACACACAATATATACAGTATAGCAAAGTTAAATGCAATGCATGTAACATATAAGTAATGGATTAAGCTGAAATTTTCTAGTAAACATTAGCAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29596247 169 + 172585720 -TCATAAATTGGCAACCTCTTTAATACCTAGAGACTAGATTAGATATTATAAAATTAGGACTCCTTCGTCCACTACATACACAATATATACAGTATAGCAAAGTTAAATGCGATGCATGTAACATATAGGTAATGGATTAAGCCGAAATTTTCTAGTAAACACTAGCAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29257482 169 - 170955103 -TCATAAATTGGCAACCTCTTTAATACCTAGAGACTAGATTAGATATTATAAAATTAGGACTCCTTCGTCCACTACATACACAATATATACAGTATAGCAAAGTTAAATGCGATGCATGTAACATATAGGTAATGGATTAAGCCGAAATTTTCTAGTAAACACTAGCAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2267534 169 -   2996164 -TCATAAATTGGCAACCTCTTTAATACCTAGAGACTAGATTAGATATTATAAAATTAGGACTCCTTCGTCCACTACATACACAATATATACAGTATAGCAAAGTTAAATGCGATGCATGTAACATATAGGTAATGGATTAAGCCGAAATTTTCTAGTAAACACTAGCAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2141196 170 -   2157725 GTCATAAATTGGTAACCTCTTTAATACCTAGAGACTAGATTAGATATTATAAAATTAGGACTCCTTCGTCCACTACCTACACAATATATACAGTATAGCAAAGTTAAATGCGATGCATGTAACATATAGGTAATGGATTAAGCTGAAATTTTCTAGTAAACACTAGCAAA
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2285268 170 +   2316924 GTCATAAATTGGCAACCTCTTTAATACCTAGAGACTAGATTAGATATTATAAAATTAGGACTCCTTCGTCCACTACATACACAATATATACAGTATAGCAAAGTTAAATGCGATGCATGTAACATATAGGTAATGGATTAAGCTGAAATTTTCTAGTAAACACTAGCAAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2023446 166 -   3067355 GTCATACACTGACAACCTCTTTAATATCTAGAGACTAGACTAGA---TATAAAATTAGGACTCCTTTGTTCAGTATATACAAGATAGATACAGTATAGTAAAGTTAAATGAAATTCATGTAACACACAGGCAATGGATTAAG-TGAAAATTTCTACTAAACACTAGCAAA
i colAng1.NW_012115566v1   I 26 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             43437155   0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=-1480.000000
s hg38.chr6_GL000254v2_alt    429084 9 +   4827813 ACACTTTTT-----
s panTro5.chr6              29403705 4 + 175400573 ACAC----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29649411 4 + 173848474 ACAC----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5436120 4 +   6154872 ACAC----------
i gorGor5.CYUI01015250v1   C 0 C 0
s colAng1.NW_012115566v1     2023612 9 -   3067355 ACAG-----TTTTT
i colAng1.NW_012115566v1   C 0 I 74
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2285438 0 +   2316924 C
e chlSab2.chr17             43437155 0 +  71996105 I
e cerAty1.NW_012001495v1     2141366 0 -   2157725 C
e macNem1.NW_012011356v1     2267703 0 -   2996164 C
e macFas5.chr4              29257651 0 - 170955103 C
e rheMac8.chr4              29596416 0 + 172585720 C
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=168557.000000
s hg38.chr6_GL000254v2_alt    429093 310 +   4827813 ATTTtttattttttattattatac-tttaagttttagggtacatgtgcacattgtgcaggttagttacatatgtatacatgtgccacgctggtgcgctgcacccactaactcgcatctagcattaggtatatctcccaacgctatccctcccccctccccccaccccacaacagtccccagagtgtgatattccccttcctgtgtccatgtgatctcgttgttcagttcccacctatgagtgagaatatgcggtgtttggcttggatgaaattggaaatcatcattctcagtaaactatcgcaagagcaag
s panTro5.chr6              29403709 309 + 175400573 --TTtttattttttattattatacttttaagttttagggtacatgtgcacattgtgcaggttagttacatatgtatacatgtgccatgctggtgcgctgcacccactaacttgcatctagcattaggtatatctcccaacgctatccctcccccttccccccaccccacaacagtccccagagtgtgatattccccttcctgtgtccatgtgatctcattgttcagttcccacctatgagtgagaatatgcggtgtttggcttggatgaaattggaaatcatcattctcagtaaactatcgcaagagcaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29649415 308 + 173848474 --TTtttattttttattattatacttttaagttttagggtacatgtgcacattgtgcaggttagttacatatgtatacatgtgccatgctggtgcgctgcacccactaacttgcatctagcattaggtatatctcccaacgctatccctccccctt-cccccaccccacaacagtccccagagtgtgatattccccttcctgtgtccatgtgatctcattgttcagttcccacctatgagtgagaatatgcggtgtttggcttggatgaaattggaaatcatcattctcagtaaactatcgcaagagcaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5436124 308 +   6154872 --TTtttattttttattattatac-tttaagttttagggtacatgtgcacattgtgcaggttagttacatatgtatacatgtgccatgctggtgcgctgcacccactaactctcatctagcattaggtatatctcccaacgctatccctcccccctccccccaccccacaacagtccccagagtgtgatattccccttcctgtgtccatgtgatctcattgttcagttcccacctatgagtgagaatatgcggtgtttggcttggatgaaattggaaatcatcattctcagtaaactatagcaagagcaaa
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e colAng1.NW_012115566v1     2023621  74 -   3067355 I
e manLeu1.NW_012104165v1     2285438   0 +   2316924 C
e chlSab2.chr17             43437155   0 +  71996105 I
e cerAty1.NW_012001495v1     2141366   0 -   2157725 C
e macNem1.NW_012011356v1     2267703   0 -   2996164 C
e macFas5.chr4              29257651   0 - 170955103 C
e rheMac8.chr4              29596416   0 + 172585720 C
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=237146.000000
s hg38.chr6_GL000254v2_alt    429403 76 +   4827813 acacTTTTTGCAATATCTTCCTTCCAATCTCCCTCAACCCAATGAACATGTACAGAGAG--GACGCTGTTCACAGAGG
s panTro5.chr6              29404018 76 + 175400573 acacTTTTTGCAATATCTTCCTTCCAATCTCCCTCAACCCAATGAACATGTACAGAGAG--GACGCTGTTCACAGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29649723 76 + 173848474 acacTTTTTGCAATATCTTCCTTCCAATCTCCCTCAACCCAATGAACATGTACAGAGAG--GACGCTGTTCACAGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5436432 76 +   6154872 acacTTTTTGCAATATCTTCCTTCCAATCTCCCTCAACCCAATGAACATGTACAGAGAG--GACGCTGTTCACAGAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29596416 78 + 172585720 ACACCTTTTGCAATATCTTCCTTCCAATCTCCCTCAATCCGATGAACATGTACAGAGAGTATACACTGTTCACAGAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29257651 78 - 170955103 ACACCTTTTGCAATATCTTCCTTCCAATCTCCCTCAATCCGATGAACATGTACAGAGAGTATACACTGTTCACAGAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2267703 78 -   2996164 ACACCTTTTGCAATATCTTCCTTCCAGTCTCCCTCAATCCGATGAACATGTACAGAGAGTATACACTGTTCACAGAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2141366 78 -   2157725 ACACCTTTTGCAATATCTTCCTTCCAATCTCCCTCAATCCGATGAACATGTACAGAGAGTATACACTGTTCACAGAGG
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2285438 78 +   2316924 ACACCTTTTGCAATATCTTCCTTCCAATCTCCCTCAATCCGATGAACATGTACAGAGAGTATACACTGTTCACAGAGG
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e colAng1.NW_012115566v1     2023621 74 -   3067355 I
e chlSab2.chr17             43437155  0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=572715.000000
s hg38.chr6_GL000254v2_alt    429479 153 +   4827813 TGGTTCAACAATGCCAGTTCCAAAAAGTATTTCTCATTAC-TTTTAAAAGATATTTACAGAAAGTGTTATTCTACTACTTCTATTTTTAAATACACCAAGCACTTCCAAATATCTAGAAAGATTAAATATTTCATATAACTTGTCCACCATGTA
s panTro5.chr6              29404094 153 + 175400573 TGGTTCAACAATGCCAGTTCCAAAAAGTATTTCTCATTAC-TTTTAAAAGATATTTACAGAAAGTGTTATTCTACTACTTCTATTTTTAAATACACCAAGCACTTCCAAATATCTAGAAAGATTAAATATTTCATATAACTTGTCCACCATGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29649799 153 + 173848474 TGGTTCAACAATGCCAGTTCCAAAAAGTATTTCTCATTAC-TTTTAAAAGATATTTACAGAAAGTGTTATTCTACTACTTCTATTTTTAAATACACCAAGCACTTCCAAATATCTAGAAAGATTAAATATTTCATATAACTTGTCCACCATGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5436508 153 +   6154872 TGGTTCAACAATGCCAGTTCCAAAAAGTATTTCTCATTAC-TTTTAAAAGATATTTACAGAAAGTGTTATTCTACTACTTCTATTTTTAAATACACCAAGCACTTCCAAATATCTAGAAAGATTAAATATTTCATATAACTTGTCCACCATGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29596494 152 + 172585720 TGGTTCAACAATGCCAGTTCCAAACAGTATTTCTCATTAG-TTTTAAAAGATATTTA-AAAAAGTGTTATTCTGCTACTTCTATTTTTAAATACACCAAGCACTTTCAAATATCTAGAAAGACTAGATATTTCATATAACTTGTCCACCGTGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29257729 152 - 170955103 TGGTTCAACAATGCCAGTTCCAAACAGTATTTCTCATTAG-TTTTAAAAGATATTTA-AAAAAGTGTTATTCTGCTACTTCTATTTTTAAATACACCAAGCACTTTCAAATATCTAGAAAGACTAGATATTTCATATAACTTGTCCACCGTGTA
i macFas5.chr4             C 0 I 313
s macNem1.NW_012011356v1     2267781 152 -   2996164 TGGTTCAACAATGCCAGTTCCAAACAGTATTTCTCATTAG-TTTTAAAAGATATTTA-AAAAAGTGTTATTCTGCTACTTCTATTTTTAAATACACCAAGCACTTTCAAATATCTAGAAAGACTAGATATTTCATATAACTTGTCCACCGTGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2141444 152 -   2157725 TGGTTCAACAATGCCAGTTCCAAACGGTATTTCTCATTAG-TTTTAAAAGATATTTT-AAAAAGTGTTATTCTACTACTTCTATTTTTAAATACACCAAGCACTTTCAAATATCTAAAAACACTAGATATTTCATATAACTTGTCCACCGTGTA
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2285516 152 +   2316924 TGGTTCAACAATGCCAGTTCCAAACGGTATTTCTCATTAG-TTTTAAAAGATATTTA-AAAAAGTGTTATTCTACTACTTCTATTTTTAAATACACCAAGCACTTTCAAATATCTAGAAACACTAGATATTTCATATAACTTGTCCACTGTGTA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2023695 154 -   3067355 TGGTTCAACAATTCCAGTTCCAAATAGTATTTCCCATTAGTTTTTAAAAGCTATTTACAAAAAGTGTTATTCTAATACTTCTACTTTTAAATACATCAAGCACTTCTAAATATCTAGAAAGACTAGATATTTCATAAAATTTGTCCACTATGTA
i colAng1.NW_012115566v1   I 74 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             43437155   0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=11401.000000
s hg38.chr6_GL000254v2_alt    429632 4 +   4827813 CATG
s panTro5.chr6              29404247 4 + 175400573 CACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29649952 4 + 173848474 CACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5436661 4 +   6154872 CATG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29596646 4 + 172585720 CACA
i rheMac8.chr4             C 0 I 313
s macFas5.chr4              29258194 4 - 170955103 CACA
i macFas5.chr4             I 313 C 0
s macNem1.NW_012011356v1     2267933 4 -   2996164 CACA
i macNem1.NW_012011356v1   C 0 I 307
s cerAty1.NW_012001495v1     2141596 4 -   2157725 CACA
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2285668 4 +   2316924 CACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2023849 4 -   3067355 CAGA
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             43437155 0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=354581.000000
s hg38.chr6_GL000254v2_alt    429636 93 +   4827813 GCACTGTTAAATAAAATTGCACACACATAACAACAGTTATAATCTGAGGTATCTTCTAAACATGACCATTTTGGCCTTGAAGTAGTCCTTCCT
s panTro5.chr6              29404251 93 + 175400573 GCACTGTTAAATAAAATTGCACACACATAACAACAGTTATAATCTGAGGTATCTTCTAAACATGACCATTTTGGCCTTGAAGTAGTCCTTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29649956 93 + 173848474 GCACTGTTAAATAAAATTGCACACACATAACAACAGTTATAATCTGAGGTATCTTCTAAACATGACCATTTTGGCCTTGAAGTAGTCCTTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5436665 93 +   6154872 GCACTGTTAAATAAAATTGCACACACATAACAACAGTTATAATCTGAGGTATCTTCTAAACATGACCATTTTGGCCTTGAAGTAGTCCTTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29596963 93 + 172585720 GCACTGTTAAATAAAATTGCACACACATAACAACAGTTATAATCTGAGGTATCTTCTAAACATGACCATTTTGGCCTTGAAGTATTCCTTCCT
i rheMac8.chr4             I 313 C 0
s macFas5.chr4              29258198 93 - 170955103 GCACTGTTAAATAAAATTGCACACACATAACAACAGTTATAATCTGAGGTATCTTCTAAACATGACCATTTTGGCCTTGAAGTATTCCTTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2268244 93 -   2996164 GCACTGTTAAATAAAATTGCACACACATAACAACAGTTATAATCTGAGGTATCTTCTAAACATGACCATTTTGGCCTTGAAGTATTCCTTCCT
i macNem1.NW_012011356v1   I 307 C 0
s cerAty1.NW_012001495v1     2141600 93 -   2157725 GCACAGTTAAATAAAATTGCACACACATAACAACAGTTATAATCTGAGGTATCTTCTAAACATGACCATTTTGGCCTTGAAGTATTCCTTCCT
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2285672 93 +   2316924 GCACAGTTAAATAAAATTGCACACACATAACAACAGTTATAATCTGAGGTATCTTCTAAACATGACCATTTTGGCCTTGAAGTATTCCTTCCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2023853 91 -   3067355 GTACTGTTCAATAAAATT--ATACACATAACAATGGTTATAATCTGTGGTAACTTATAAATATGACAGTTTTGCCTTTGAACCATTCCCCCCT
i colAng1.NW_012115566v1   C 0 I 61
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             43437155  0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=197703.000000
s hg38.chr6_GL000254v2_alt    429729 59 +   4827813 TTCTTCTCTCTGCCTTTATTTCAGTAGACAAGTATAGGCATGTGTCATACTTTAGAAAT
s panTro5.chr6              29404344 59 + 175400573 TTCTTCTCTCTGCCTTTATTTCAGTAGACAAGTATAGGCATGTGTCATACTTTAGAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29650049 59 + 173848474 TTCTTCTCTCTGCCTTTATTTCAGTAGACAAGTATAGGCATGTGTCATACTTTAGAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5436758 59 +   6154872 TTCTTCTCTCTGCCTTTATTTCAGTAGACAAGTATAGGCATGTGTCATGCTTTAGAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29597056 59 + 172585720 TTCTTCTCTCTGCCTTTATTTCAGTAGACAAGTATAGGCATGTGTCATGCTTTAGAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29258291 59 - 170955103 TTCTTCTCTCTGCCTTTATTTCAGTAGACAAGTATAGGCATGTGTCATGCTTTAGAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2268337 59 -   2996164 TTCTTCTCTCTGCCTTTATTTCAGTAGACAAGTATAGGCATGTGTCATGCTTTAGAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2141693 59 -   2157725 TTCTTCTCTCTGCCTTTATTTCAGTAGACAAGTATAGGCATGTGTCATGCTTTAGAAAT
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2285765 59 +   2316924 TTCTTCTCTCTGCCTTTATTTCAGTAGACAAGTATAGGCATGTGTCATGCTTTAGAAAT
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e colAng1.NW_012115566v1     2023944 61 -   3067355 I
e chlSab2.chr17             43437155  0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=793147.000000
s hg38.chr6_GL000254v2_alt    429788 211 +   4827813 GGTTGAACAAATTTAGATCCAAAAGTTATTTACAGAAGACAAGGTTTCCTATGAATTTCAACACAAAGCTTACAAAAAGTGCTAATTTTACTAAGTACTTTGTCATACACTGCCAGCCTCTTTAACATCTAGAGACTAGATGTTGCAAAATTAGGACTCATTTGTTCATTATATGCGCTATATACAGAGCAAAACACAATGCACAAAACAT
s panTro5.chr6              29404403 211 + 175400573 GGTTGAACAAATTTAGATCCAAAAGTTATTTACAGAAGACAAGGTTTCCTATGAATTTCAACACAAAGCTTACAAAAAGTGCTAATTTTACTAAGTACTTTGTCATACACTGCCAGCCTCTTTAACATCTAGAGACTAGATGTTGCAAAATTAGGACTCATTTGTTCATTATATGTGCTATATACAGAGCAAAACACAATGCACAAAACAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29650108 211 + 173848474 GGTTGAACAAATTTAGATCCAAAAGTTATTTACAGAAGACAAGGTTTCCTATGAATTTCAACACAAAGCTTACAAAAAGTGCTAATTTTACTAAGTACTTTGTCATACACTGCCAGCCTCTTTAACATCTAGAGACTAGATGTTGCAAAATTAGGACTCATTTGTTCATTATATGTGCTATATACAGAGCAAAACACAATGCACAAAACAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5436817 210 +   6154872 GGTTGAACAAATTTATATCCAAAAGTTATTTACAGAAGACAAGGTTTCCTATGAATTTCAACACAAAGCTTACAAAAAGTGCTAATTTTACTAAGTACTTTGTCGTACACTGCCAGCCTCTTTAACATCTAGAGACTAGATGTTGCAAAATTAGGACTCATTTGTTCATTATATGCGCTATATACAGAG-AAAACACAATGCACAAAACAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29597115 211 + 172585720 TGTTGAACAAATTTATATCCAAAAGTTATTTACAGAAGACAAGGTTTCCTGTGAATTTCAACACAAAGCGTACAAAACATGCTAATTTTACTAAGTACTTTGTCATACATTGCCAACCTCTTTAACATCTAGAGACTAGATGCTGCAAAATTAGGACTCATTTGTTCATTATATATGCTATATACAGAGCAAAACACAATGCACAAAACAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29258350 197 - 170955103 TGTTGAACAAATTTATATCCAAAAGTTATTTACAGAAGACAAGGTTTCCTGTGAATTTCAACACAAAGCGTACAAAACATGCTAATTTTACTAAGTACTTTGTCATACATTGCCAACCTCTTTAACATCTAGAGACTAGATGTTGCAAAATTAGGACTCATTTGTTCATTATATATGCTATATACAGAGCAAAACAC--------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2268396 211 -   2996164 TGTTGAACAAATTTATATCCAAAAGTTATTTACAGAAGACAAGGTTTCCTGTGAATTTCAACACAAAGCGTACAAAACATGCTAATTTTACTAAGTACTTTGTCATACATTGCCAACCTCTTTAACATCTAGAGACTAGATGTTGCAAAATTAGGACTCATTTGTTCATTATATATGCTATATACAGAGCAAAACACAATGCACAAAACAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2141752 211 -   2157725 TGTTGAACAAATTTATATCCAAAAGTTATTTACAGAAGACAAGGTTTCCTATGAATTTCAACACAAAGCGTACAAAACGTGCTAATTTTACTAAGTACTTTGTCATACATTGCCAACCTCTTTAACATCTAGAGACTAGATGTTGCAAAATTAGGACTCATTTGTTCATTATATATGCCATATACAGAGCAAAACACAATGCATAAAACAT
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2285824 211 +   2316924 TGTTGAACAAATTTATATCCAAAAGTTATTTACAGAAGACAAGGTTTCCTATGAATTTCAACACAAAGCGTACAAAACATGCTAATTTTACTAAGTACTTTGTCATACATTGCCAACCTCTTTAACATCTAGAGACTAGATGTTGCAAAATTAGGACTCATTTGTTCATTATATATGCTATATACAGAGCAAAACACAATGCATAAAACAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2024005 211 -   3067355 TGTTGGACAAATTTCTATCCAAAAGTCATTTACAGAAGACAAGGTTTCCTATGAATTTCAACACAGAGTGTATAAAATGTGCTAATTTTACTAAGTACTTAGTCAGACACTGGCAACCTCTTTAACATCTATGGACTAGATATTGCAAAATTAGGGCTCATTTGTTCATTCTATACACACGATACAGAGCAAAACTAAATGCACAAAACAT
i colAng1.NW_012115566v1   I 61 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             43437155   0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=65450.000000
s hg38.chr6_GL000254v2_alt    429999 103 +   4827813 ACAGAAAAATGGTGCCTGAAAATGTGCAAGTATGAGCACACTAGCATGTTACCTTTTGCAGTTTCATCCGTCCCAGCTCCTCTAAACTACTGAGCAAGTATAG
s panTro5.chr6              29404614 102 + 175400573 ACAGAAAAATGGTGCCTGAAAATGTGCAAGTATGAGCACACTAGCATGTTACC-TTTGCAGTTTCATCCGTCCCAGCTCCTCTAAACTACTGAGCAAGTATAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29650319 102 + 173848474 ACAGAAAAATGGTGCCTGAAAATGTGCAAGTATGAGCACACTAGCATGTTACC-TTTGCAGTTTCATCCGTCCCAGCTCCTCTAAACTACTGAGCAAGTATAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5437027 103 +   6154872 ACAGAAAAATGGTGCCTGAAAATGTGCAAGTATGAGCACACTAGCATATTACCTTTTGCAGTTTCATCCGTCCCAGCTCCCCTAAACTACTGAGCAAGTATAG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29258547  14 - 170955103 --------------------AATGCACAA-------------AACAT--------------------------------------------------------
i macFas5.chr4             C 0 C 0
s colAng1.NW_012115566v1     2024216 102 -   3067355 ACAGAAAAATGCTGTCTGAAAATGTCCAAGTATAAACACCCTAGCATAGTACCTTTTGCAATTTCTTCCCT-CCGCTTCCTCTAAACTATCAAACAAGTGTAG
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2286035   0 +   2316924 C
e chlSab2.chr17             43437155   0 +  71996105 I
e cerAty1.NW_012001495v1     2141963   0 -   2157725 C
e macNem1.NW_012011356v1     2268607   0 -   2996164 C
e rheMac8.chr4              29597326   0 + 172585720 C
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=104902.000000
s hg38.chr6_GL000254v2_alt    430102 29 +   4827813 ACAGTACTATACCACTCACAAAGATGGCT
s panTro5.chr6              29404716 29 + 175400573 ACAGTACTATACCACTCACAAAGATGGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29650421 29 + 173848474 ACAGTACTATACCACTCACAAAGATGGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5437130 29 +   6154872 ACAGTACTATACCACTCACAAAGATGGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29597326 29 + 172585720 ACAGTACTATATTGCTTACAAAGATGGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29258561 29 - 170955103 ACAGTACTATATTGCTTACAAAGATGGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2268607 29 -   2996164 ACAGTACTATATTGCTTACAAAGATGGCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2141963 29 -   2157725 ACAGTACTATATTGCTCACAAAGATGGCT
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2286035 29 +   2316924 ACAGTACTATATTGCTCACAAAGATGGCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2024318 29 -   3067355 ACAGTACTACACTGCCCACAAACGTGACT
i colAng1.NW_012115566v1   C 0 N 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             43437155  0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=4727069.000000
s hg38.chr6_GL000254v2_alt    430131 1233 +   4827813 TAATAATTCAATTTCCAAAACACAGTATTTCCTATGAATTTCAGCAAAAAGACATTTACAAAGTGAAATTTTGCTACCTCTACATTTAACATACATCAGGCCCTTCTAAACATCTAAATAGACTAGCGGTTTCAGGTAAGAAGTTAATCTGTCCACTATGTACACTGCAGCCTTGAATAAACTGCATACATGTAACAATAGTTATAATTTGAAGGAGTCTTCCAAATGTGAACATTCTGGCCTAAAAATCTTTCCATCTCCATCAACCCAGTGGGCAAGAATGCTCAAGTTTTCAGAAGACAATCTTCCCTAGGAATTTAAAAACAAAATGTACAAAAATATTAGTTTACTAACTCTACTTTTGTAATTCACTGGCAACCTCCATAACATCTAGAAAGACTAGATGTAAATTAGGACTTGTTTTCCTCTATATACACTTTATACATAGATAAGTAAAAGAAAATGCACAAACATAAGATATAATGGTTAATCTTGCCTCACTGTAAGCACACTGGTGGCACAGAGCTCTCTGCACAGcctcctc------ctcctcctctcctGAACTGGCGCATAATACAATGCATATTACTCAACTTGTGGTTTGGCCATTCCCCCTAAAACAATGTTTCATTCGAATTTTAACAAAAAGATACTTACAAAATGTGTTATTTTACTACTTCTAGTTTAAACATATATCAGGCACCTCAGAACATCTAGAAACACTAGACATTTC-AAAAAAGTGTAGCATTGTCAATGATCTATACAGTAGTAGGGAATAAAATGCACACAAAACAATGGAAAGAATATGAGAATGTCTTCTGAATATGACTAGTCTGG-----------CACAGAACCTTCTTCTTTTCCTTCTCAGGTCTTCTTCTTCATGCCCTCTAACCCACTGAACAAATGTGGTTGTGTCTGTCGTTCCTGGTATGGCTTCCAGAAGTGGTCCAACAATTCCATTGCGAAAAGCCATTTCCAGAAGACATCTATTTTCTATCATTTCTTTTTGAACAAATGAGAATTTATAAGATGTGTGATTTTCTAACTTTATCATACATCACAACCTCTTTCCATCTAGAAGGGCTAAATGTGGCAAATGTTTTCTATTTAAAAGTT-GGGGCGGGGGCAGTTGAGAGCCGCTTTCTCACTTTACACACGCAGGGCCTTCTATAAACGGTGGTAATTAAATCTTCCCAAAGGGTAGTGGGCATCTCCAATACGCCAAATGTGGCCTGTTCC---
s panTro5.chr6              29404745 1234 + 175400573 TAATAATTCAATTTTCAAAACACAGTATTTCCTATGAATTTCAGCAAAAAGACATTTACAAAGTGAAATTTTGCTACCTCTACATTTAACATACATCAGGCTCTTCTAAACATCTAAATAGACTAGCGGTTTCAGGTAAGAAGTTAATCTGTCCACTATGTACACTGCAGCCTTGAATAAACTGCATACATGTAACAATAGTTATAATTTGAAGGAGTCTTCCAAATGTGAACATTCTGGCCTAAAAATCTTTCCATCTCCATCAACCCAGTGGGCAAGTATGCTCAAGTTTTCAGAAGACAATCTTCCCTAGGAATTTAAAAACAAAATGTACAAAAATATTAGTTTACTAACTCTACTTTTGTAATTCACTGGCAACCTCCATAACATCTAGAAAGACTAGATGTAAATTAGGACTTGTTTTCCTCTATATACACTTTATACATAGATAAGTAAAAGAAAATGCACAAACATAAGATATAATGGTTAATCTTGCCTCACTGTAAGCACACTGGTGGCACAGAGCTCTCTGCACAGcctcctc------ctcctcctctcctGAACTGGCGCATAATACAATGCATATTACTCAACTTGTGGTTTGGCCATTCCCCCTAAAACAATGTTTCATTCGAATTTTAACAAAAAGATACTTACAAAATGTGTTATTTTACTACTTCTAGTTTAAACATATATCAGGCACCTCAGAACATCTAGAAACACTAGACATTTCAAAAAAAGTGTAGCATTGTCAATGATCTATACAGTAGTAGGGAATAAAATGCACACAAAACAATGGAAAGAATATGAGAATGTCTTCTGAATATGGCTAGTCTGG-----------CACAGAACCTTCTTCTTTTCCTTCTCAGGTCTTCTTCTTCATGCCCTGTAACCCACTGAACAAATGTGGTTGTGTCTGTCGCTCCTGGTATGGCTTCCAGAAGTGGTCCAACAATTCCATTGCGAAAAGCCATTTCCAGAAGACATCTATTTTCTATCATTTCTTTTTGAACAAATGAGAATTTATAAGATGTGTGATTTTCTAACTCTATCATACATCACAACCTCTTTCCATCTAGAAGGGCTAAATGTGGCAAATGTTTTCTATTTAAAAGTT-GGGGCGGGGGCAGTTGAGAGCCGCTTTCTCACTTTACACACGCAGGGCCTTCTATAAACGGTGGTAATTAAATCTTCCCAAAGGGTAGTGGGCATCTCCAATACGCCAAATGTGGCCTGTTCC---
i panTro5.chr6             C 0 I 6392
s panPan2.chr6              29650450 1234 + 173848474 TAATAATTCAATTTTCAAAACACAGTATTTCCTATGAATTTCAGCAAAAAGACATTTACAAAGTGAAATTTTGCTACCTCTACATTTAACATACATCAGGCCCTTCTAAACATCTAAATAGACTAGCGGTTTCAGGTAAGAAGTTAATCTGTCCACTATGTACACTGCAGCCTTGAATAAACTGCATACATGTAACAATAGTTATAATCTGAAGGAGTCTTCCAAATGTGAACATTCTGGCCTAAAAATCTTTCCATCTCCATCAACCCAGTGGGCAAGTATGCTCAAGTTTTCAGAAGACAATCTTCCCTAGGAATTTAAAAACAAAATGTACAAAAATATTAGTTTACTAACTCTACTTTTGTAATTCACTGGCAACCTCCATAACATCTAGAAAGACTAGATGTAAATTAGGACTTGTTTTCCTCTATATACACTTTATACATAGATAAGTAAAAGAAAATGCACAAACATAAGATATAATGGTTAATCTTGCCTCACTGTAAGCACACTGGTGGCACAGAGCTCTCTGCACAGcctcctc------ctcctcctctcctGAACTGGCGCATAATACAATGCATATTACTCAACTTGTGGTTTGGCCATTCCCCCTAAAACAATGTTTCATTTGAATTTTAACAAAAAGATACTTACAAAATGTGTTATTTTACTACTTCTAGTTTAAACATATATCAGGCACCTCAGAACATCTAGAAACACTAGACATTTCAAAAAAAGTGTAGCATTGTCAATGATCTATACAGTAGTAGGGAATAAAATGCACACAAAACAATGGAAAGAATATGAGAATGTCTTCTGAATATGACTAGTCTGG-----------CACAGAACCTTCTTCTTTTCCTTCTCAGGTCTTCTTCTTCATGCCCTCTAACCCACTGAACAAATGTGGTTGTGTCTGTCGCTCCTGGTATGGCTTCCAGAAGTGGTCCAACAATTCCATTGCGAAAAGCCATTTCCGGAAGACATCTATTTTCTATCATTTCTTTTTGAACAAATGAGAATTTATAAGATGTGTGATTTTCTAACTCTATCATACATCACAACCTCTTTCCATCTAGAAGGGCTAAATGTGGCAAATGTTTTCTATTTAAAAGTT-GGGGCGGGGGCAGTTGAGAGCCGCTTTCTCACTTTACACACGCAGGGCCTTCTATAAACGGTGGTAATTAAATCTTCCCAAAGGGTAGTGGGCATCTCCAATACGCCAAATGTGGCCTGTTCC---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5437159 1230 +   6154872 TAATAATTCAATTTCCAAAACACAGTATTTCCTATGAATTTCAGCAAAAAGACATTTACAAAGTGAAATTTTGCTACCTCTACATTTAACATACATCAGGCCCTTCTAAACATCTAAATAGACTAGCGGTTTCAGGTAAGAAGTTAATCTGTCCACTATTTACACTGCAGCCTTGAATAAACTGCATACATGTAACAATAGTTATAATTTGAAGGAGTCTTCCAAATGTGAACATTCTGGCCTAAAAATCTTTCCATCTCCATCAACCCAGTGGGCAAGAATGCTCAACTTTTCAGAAGACAATCTTCTCTAGGAATTTAAAAACAAAATGTACAAAAATATTAGTTTACTAACTCTACTTTTGTAATTCACTGGCAACCTCCATAACATCTAGAAAGACTAGATGTAAATTAGGACTTGTTTTCCTCTATATACACTTTATACATAGATAAGTAAAAGAAAATGCACAAACATAAGATATAATGGTTAATCTTGCCTCACTGTAAGCACACTGGTGGCACAGAGCTCTCTGCACAGcctcctc------ctcctcctctcctGAGCTGGCGCATAATACAATGCATATTACTCAACCTGTGGTTTGGCCATTCCCCCTAAAACAATGTTTCATTCGAATTTTAACAAAAAGATACTTACAAAATGTATTATTTTACTACTTCTAGTTTAAACATATATCAGGCACCTCAGAACATCTAGAAACACTAGACATTTC-AAAAAAGTGTAGCATTGTCAATGATCTATACAGCAGTAGGGAATAAAATGCACACAAAACAATGGAAAGAATATGAGAATGTCTTCTGAATATGACTAGTCTGG-----------CACAGAACCTTCTTCTTTTCCTTCTCAGG---TCTTCTTCATGCCCTCTAACCCACTGAACAAATGTGGATATGTCTGTCGCTCCTGGTATGGCTTCCAGAGGTGGTCCAACAATTCCATTGCGAAAAGCCATTTCCAGAAGACATCTATTTTCTATCATTTCTTTTTGAACAAATGAGAATTTATAAGATGTGTGATTTTCTAACTCTATCATACATCACAACCTCTTTCCATCTAGAAGGGCTAAATGTGGCAAATGTTTTCTATTTAAAAGTT-GGGGCGGGGGCAGTTGAGAGCCGCTTTCTCACTTTACACACGCAGGGCCTTCTACAAACGGTGGTAATTAAATCTTCCCAAAGGGTAGTGGGCATCTCCAATACACCAAATGTGGCCTGTTCC---
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29597355 1240 + 172585720 TAACAATTCAATCTCCAAAATACAGCATTTCCTATGAATTTCAACAAAAAGACATTTACCAAGTGAAATTTTACTACCTCTACATTTAACATACATCGGGCCCTTCTAAACATCTAAATAGACTAGAGGCTTCAGGTAAGAAGTTAATCTGTCCACTATGTACACTGCAGCCCTGAATAAACTGCATACATGTAACAATAGTTATAATTTGAAGGAGTCTTCCAAATGTGAACATTCTGGCCTAGAAATCTTTCCATCTGCATCAACCCAGTAGGCAAGAATGCTCAAGTTTTCAGAAGACAATCTTTCTTAGAAATTTAAAAAC-AAATATACAAAAATATTATTTTATTAACTCTACTTTTGTCATACACTGGCAACCTCTATAACATCTAGAAACACTAGATGTAAATTAGGACTTGTTTTCCTCTATATACACTTTATACACAGATAAGTAAAACAAAATGCACAAACATAAGATACAATGGTTAATATTGTCTCACTGTAAGTCCACTGGTGGCACAGAGCTCTCTGCACAGcctccttctcctcctcctcctctcctGAACCAGTGCATAATACAATGCAAAGTACTCAACTGGTGGTTTGGCCATTCCCCC-AAAACAACGTTTCATACGAATTTTAACAAAAAGATACTTACAAAATGTGTTATTTTACTACTTCTAGTTTAAACATATATCAGGCACTTCAGAACATCTAGAAAGACTAGACATTTC-AAAAAAGTTTAGCATTGTCAACGATCTATACAGTAGTAGGGAATAAAATGCACACAAAACAATGGAAAGAATATGAGAAAGTCTTCTGAATATGACTAGTCTGG-----------CACAGAACCTTCTTCTCTTTCTTCTCAGGTCTTCTTCTTCATGTCCTCTAACCCACTGAACAAACGTGGATGGGTCTGTCATTCCTGGTATGGCTTCCAGAGGTGGTCCAACAATTCCATTTCGAAAAGCCATTTCCAGAAGACATCGATTTTCTATGATTTATTTTTGAACAAGTGAGAATTTATAAGATGTGTGATTTTCTAACTCTATCATACATCACAACCTTTTTCCATCTAGAAGGGCTAGATTTGGCAAATGTTTTCTATTTAAAAGTTGGGGGCGGAGGAAGTTGAGAGCCACTTTCTCATATTACACACGAA-GGCCTTCTATAAACGGTGGTAATTAAATCTTCCCAAAGGGTAGCGGGCATCTCCAATGCGCCAAATGTGGCCTGTTGTTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29258590 1240 - 170955103 TAACAATTCAATCTCCAAAATACAGTATTTCCTATGAATTTCAACAAAAAGACATTTACCAAGTGAAATTTTACTACCTCTACATTTAACATACATCGGGCCCTTCTAAACATCTAAATAGACTAGAGGCTTCAGGTAAGAAGTTAATCTGTCCACTATGTACACTGCAGCCCTGAATAAACTGCATACATGTAACAATAGTTATAATTTGAAGGAGTCTTCCAAATGTGAACATTCTGGCCTAGAAATCTTTCCATCTGCATCAACCCAGTAGGCAAGAATGCTCAAGTTTTCAGAAGACAATCTTCCTTAGAAATTTAAAAAC-AAATATACAAAAATATTATTTTATTAACTCTACTTTTGTCATACACTGGCAACCTCTATAACATCTAGAAACACTAGATGTAAATTAGGACTTGTTTTCCTCTATATACACTTTATACACAGATAAGTAAAACAAAATGCACAAACATAAGATACAATGGTTAATATTGTCTCACTGTAAGTCCACTGGTGGCACAGAGCTCTCTGCACAGcctccttctcctcctcctcctctcctGAACCAGTGCATAATACAATGCAAAGTACTCAACTGGTGGTTTGGCCATTCCCCC-AAAACAACGTTTCATACGAATTTTAACAAAAAGATACTTACAAAATGTGTTATTTTACTACTTCTAGTTTAAACATATATCAGGCACTTCAGAACATCTAGAAAGACTAGACATTTC-AAAAAAGTTTAGCATTGTCAACGATCTATACAGTAGTAGGGAATAAAATGCACACAAAACAATGGAAAGAATATGAGAAAGTCTTCTGAATATGACTAGTCTGG-----------CACAGAACCTTCTTCTCTTTCTTCTCAGGTCTTCTTCTTCATGTCCTCTAACCCACTGAACAAACGTGGATGGGTCTGTCATTCCTGGTATGGCTTCCAGAGGTGGTCCAACAATTCCATTTCGAAAAGCCATTTCCAGAAGACATCGATTTTCTATGATTTATTTTTGAACAAGTGAGAATTTATAAGATGTGTGATTTTCTAACTCTATCATACATCACAACCTTTTTCCATCTAGAAGGGCTAGATTTGGCAAATGTTTTCTATTTAAAAGTTGGGGGCGGAGGAAGTTGAGAGCCAGTTTCTCATATTACACACGAA-GGCCTTCTATAAACGGTGGTAATTAAATCTTCCCAAAGGGTAGCGGGCATCTCCAATGCGCCAAATGTGGCCTGTTGTTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2268636 1237 -   2996164 TAACAATTCAATCTCCAAAATACAGTATTTCCTATGAATTTCAACAAAAAGACATTTACCAAGTGAAATTTTACTACCTCTACATTTAACATACATCGGGCCCTTCTAAACATCTAAATAGACTAGAGACTTCAGGTAAGAAGTTAATCTGTCCACTATGTACACTGCAGCCCTGAATAAACTGCATACATGTAACAATAGTTATAATTTGAAGGAGTCTTCCAAATGTGAACATTCTGGCCTAGAAATCTTTCCATCTGCATCAACCCAGTAGGCAAGAATGCTCAAGTTTTCAGAAGACAATCTTCCTTAGAAATTTAAAAAC-AAATATACAAAAATATTATTTTATTAACTCTACTTTTGTCATACACTGGCAACCTCTATAACATCTAGAAACACTAGATGTAAATTAGGACTTGTTTTCCTCTATATACACTTTATACACAGATAAGTAAAACAAAATGCACAAACATAAGATACAATGGTTAATATTGTCTCACTGTAAGTCCACTGGTGGCACAGAGCTCTCTGCACAGcctccttctcctcctcctcctctcctGAACCAGTGCATAATACAATGCAAAGTACTCAACTGGTGGTTTGGCCATTCCCCC-AAAACAACGTTTCATACGAATTTTAACAAAAAGATACTTACAAAATGTGTTATTTTACTACTTCTAGTTTAAACATATATCAGGCACTTCAGAACATCTAGAAAGACTAGACATTTC-AAAAAAGTTTAGCATTGTCAACGATCTATACAGTAGTAGGGAATAAAATGCACACAAAACAATGGAAAGAATATGAGAAAGTCTTCTGAACATGACTAGTCTGG-----------CACAGAAC---CTTCTCTTTCTTCTCAGGTCTTCTTCTTCATGTCCTCTAACCCACTGAACAAACGTGGATGGGTCTGTCATTCCTGGTATGGCTTCCAGAGGTGGTCCAACAATTCCATTTCGAAAAGCCATTTCCAGAAGACATCGATTTTCTATGATTTATTTTTGAACAACTGAGAATTTATAAGATGTGTGATTTTCTAACTCTATCATACATCACAACCTTTTTCCATCTAGAAGGGCTAGATTTGGCAAATGTTTTCTATTTAAAAGTTGGGGGCGGAGGAAGTTGAGAGCCACTTTCTCATATTACACACGAA-GGCCTTCTATAAACGGTAGTAATTAAATCTTCCCAAAGGGTAGCGGGCATCTCCAATGCGCCAAATGTGGCCTGTTGTTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2141992 1228 -   2157725 TAACAATTCAATCTCCAAAATACAGTATTTCCTATGAATTTCAACAAAAAGACATTTACCAAGTGAAATTTTACTACCTCTACATTTAACATACATCGGGCCCTTCTAAACATCTAAATAGACTAGAGGTTTCAGGTAAGAAGTTAATCTGTCCACTATGTACACTGTAGCCCTGCATAAACTGCATACATGTAACAATAGTTATAATTTGAAGGGGTCTTCCAAATGTGAACATTCTGGCCTAGAAATCTTTCCATCTGCATCAACCCAGTAGGCAAGAATGCTCAAGTTTTCAGAAGACAATCTTCCTTAGAAATTTAAAAAC-AAATATACAAAAATATTATTTTATTAACTCTACTTTTGTCATACACTGGCAACCTCTATAACATCTAGAAACACTATATGTAAATTAGGACTTGTTTTCCTCTATATACACTTTATACACAGGTAAGTAGAACAAAATGCACAAACATAAGATACAATGGTTAATATTGTCTCACTGTAAGTCCACTGGTGGCACAGAGCTCTCTGCACAGCCTCCTT------CTCCTCCTCTCCTGAACCAGTGCATAATACAATGCAAAGTACTCAACTGGCGGTTTGGCCATTCCCCCTAAAACAACGTTTCATACGAATTTTAACAAAAAGATACTTACAAAATGTGTTATTTTACTACTTCTAGTTTAAACATATATCAGGCACT-------ATCTAGAAAGACTAGACATTTC-AAAAAAGTTTAGCATTGTCAATGATCTATACAGTAGTTGGGAATAAAATGCACACAAAACAATGGAAAGACTACGAGAAAGTCTTCTGAATATGACTAGTCTGG-----------CACAGAACCTTCTTCTCTTTCTTCTCAGGTCTTCTTTTTCATGTCCTCCAACCCACTGAACAAACGTGGATGGGTCTGTCATTCCTGGTATGGCTTCCAGAGGTGGTCCAACAATTCCATTTCGAAGAGCCATTTCCAGAAGACATCTATTTTCTATGATTTGTTTTTGAACAAATGAGAATTTATAAGATGTGTGATTTTCTAACTCTATCATACATCACAACCTTTTTCCATCTAGAAGGGCTAGATTTGGCAAATGTTTTCTATTTAAAAGTTGGGGGCGGAGGAAGTTGAGAGCCACTTTCTCATATTACACACGAA-GGCCTTCTATAAACGGTGGTAATTAAATCTTCCCAAAGGGTAGCGGGCAGCTCCAATGCGCCAAATGTGGCCTGTTGTTCC
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2286064 1239 +   2316924 TAACAATTCAATCTCCAAAATACAGTATTTCCTATGAATTTCAACAAAAAGACATTTACCAAGTGAAATTTTACTACCTCTACATTTAACATATATCGGGCCCTTCTAAACATCTAAATAGACTAGAGGTTTCAGGTAAGAAGCTAATCTGTCCACTATGTACACTGTAGCCCTGCATAAACTGCATACATGTAACAATAGTTATAATTTGAAGGGGTCTTCCAAATGTGAACATTCTGGCCTAGAAATCTTTCCATCTGCATCAACCCAGTAGGCAAGAATGCTCAAGTTTTCAGAAGACAATCTTCCTTAGAAATTTAAAAAC-AAATATACAAAAATATTATTTTATTAATTCTACTTTTGTCATACACTGGCAACCTCTATAACATCTAGAAACACTATACGTAAATTAGGACTTGTTTTCCTCTATATACACTTTATACACAGATAAGTAAAACAAAATGCACAAACATAAGATACAATGGTTAATATTGTCTCACTGTAAGTCCACTGGTGGCACAGAGCTCTCTGCACAGCCTCCTT------CTCCTCCTCTCCTGAACCAGTGCATAATACAATGCAAAGTACTCAACTGGCGGTTTGGCCATTCCCCCTAAAACAACATTTCATACGAATTTTAACAAAAAGATACTTACAAAATGTGTTATTTTACTACTTCTAGTTTAAACATATATCAGGCACT-------ATCTAGAAAGACTAGACATTTC-AAAAAAGTTTAGCATTGTCAATGATCTATACAGTAGTAGGGAATAAAATGCACACAAAACAATGGAAAGAATATGAGAAAGTCTTCTGAATACGACTAGTCTGAATATGACTAGTCACAGAACCTTCTTCTCTTTCTTCTCAGGTCTTCTTCTTCATGTCCTCTAACCCACTGAACAAACGTGGATGGGTCTGTCATTCCTGGTATGGCTTCCAGAGGTGGTCCAACAATTCCATTTCGAAGAGCCATTTCCAGAAGACATCTATTTTGTATGATTTATTTTTGAACAAATGAGAATTTACAAGATGTGTGATTTTCTAACTTTATCATACATCACAACCTTTTTCCATCTAGAAGGGCTAGATTTGACAAATGTTTTCTATTTAAAAGTTGGGGGCAGAGGAAGTTGAGAGCCGCTTTCTCATATTACACACGCA-GGCCTTCTACAAACAGTGGTAATTAAATCTTCCCAAAGGGTAGCAGGCATCTCCAATGCGCCAAATGTGGCCTGTTGTTCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2125651 1230 -   3067355 TAACAATTCAATCTCCAAAATACAGTATTTCCTATGAATTTCAGCAAAAAGACATTTACCAAGTGACATTTTACTATCTCTACATTTAACATACATCGGGCCCTTCTAAACATCTAAATAGACTAGAGGTTTCAGGTAAGAAGTTAATCTGTCCACTATGTACACTGCAGCCCCGAATAAACTGCATACATGTAACAATAGTTATAATTTGAAGGAGTCTTCCAAATGTGAACATTCTGGCCTAGCAATCTTTCCATCTGCATTAACCCAGTAGGCAAGAATGCTCAAGTTTTCTGAAGACAATCTTCCTTAGAAATTTAAAAAC-AAATATACAAAAATATTATTTTATTAACTCTACTTTTGTCATACACTGGCAACCTCTATAACATCTAGAAACACTAGATGTAAATTAGGACTTCTTTTCCTCTATATACACTTTATACACAGATAAGTAAAACAAAATGCACAAACATAAGATACAATGGTTAATATTGCCTCACTGTAAGTCCACTGGTGGCACAGAGCTCTCTGCACAGCCTC---------CTCCTCCTCTCCTGAACCAGTGCATAATACAATGCAAAGTACTCAACTGGTGGTTTGGCCATTCCCCCTAAAACAACGTTTCATACGAATTTTAACAAAAAGATACTTACAAAATGTGTTATTTTACTACTTCTAGTTTAAACATGTATCAGGCACTTCAGAACATCTAGAAAGACTAGACATTTC-AAAAAAGTTTAGCATTGTCAACGATCTATACAGTAGTGGGGAATAAAATGCACACAAAACAATGGAAAGAATATGAGAAAGTCTTCTGAATATGACTAGTCTGG-----------CACAGAACCTTTTTCTCTTCCTTCTCAGGTCTTCTTCTTCACGTCCTCTAACCCACTGAATAAATGTGGATGGGTCTATCATTCCTGGTGTGGCTTCCAGCGGTGGTCCAACAATTCCATTTCGAAAAGCCATTTCCAGAAGACATCTATTTTCTATGATTTATTTTTGAACAAATGAGAATTTATGAG--GTGTGATTTTCTAACTCTATCATACATCACAACCTTTTTCCGTCTAAAAGGGTTAGATTTGGTAAATGTTTTCTATTTAAAAGTTGGGGGCAGAGGAAGTTGAGAGCCGCTTTCTCATATCACACACGCA-GGCCTTCTATAAACGGTGGTAATTAAATCTTCCCAAAGGGTAGCGGGCATCTCCAATGTGCCAAATGTGGCCTGTTGTTCC
i colAng1.NW_012115566v1   N 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             43437155    0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1632454.000000
s hg38.chr6_GL000254v2_alt    431364 421 +   4827813 ACCACTTCTCTCTTCCCACATCCAGGTCTGGTAGAGAAGGAAGACCAGTGGCCAGGTGGCCGCTATCCGTCGTTGTCTGGGACACTGCTCACCTTCCGGCCGTTGTTAATGCCGTTGTTCC-TGTCGTCAGGACTAGGTCGGTCTCGACCAGTTGGGACAGAGCGGTCCGATCTGCCCGCGCCCCGGTGGCAGGCGACCCACCTTCCCGCGCCCTCCACACCCTAACGGCCTCCGCTGCGAGTTGGGGCGGTCGCCATGCTTCCCGGCCCCCCACGCCCGCAGCCACTCAAATGCGCTGCATCCTAGCAGCTCGGCAGGGGCTTAGTTTAGGCCCCGCAGGGCTGGGCCGGG--AGACATGGAGGCCGGCGGGGTCTGGGCTGAGAGAGGAGCTGCCATCAGTCACGGAGGTGGGGTAGGGAAG
s panTro5.chr6              29412371 421 + 175400573 ACCACTTGTCTCTTCCCACATCCAGGTCTGGTAGAGAAGGAAGACCAGTGGCCAGGTGGCCGCTATCCGTCGTTGTCTGGGACACCGCTCACCTTCCGGCCGTTGTTAATGCCGTTGTTCC-TGTCGTCAGGACTAGGTCGGTCTCGACCAGTTGGGACAGAGCGGTCAGATCTGCCCGCGCCCCAGTGGCAGGCGACCCGCCTTCCCGCGCCCTCCACACCCTAACGGCCTCCGCTGCGAGTTGGGGCGGTCGCCATGCTTCCCGGCCCCCCACGCCCGCAGCCACTCAAATGCGCTGCGTCCTAGCAGCTCGGCAGGGGCTTAGTTTAGGCCCCGCAGGGCTGGGCCGGG--AGACATGGAGGCCGGCGGGGTCTGGGCTGAGAGAGGAGCTGCCATCAGTCACCGAGGTGGGGTAGGGAAG
i panTro5.chr6             I 6392 C 0
s panPan2.chr6              29651684 421 + 173848474 ACCACTTGTCTCTTCCCACATCCAGGTCTGGTAGAGAAGGAAGACCAGTGGCCAGGTGGCCGCTATCCGTCGTTGTCTGGGACACCGCTCACCTTCCGGCCGTTGTTAATGCCGTTGTTCC-TGTCGTCAGGACTAGGTCGGTCTCGACCAGTTGGGACAGAGCGGTCAGATCTGCCCGCGCCCCAGTGGCAGGCGACCCGCCTTCCTGCGCCCTCCACACCCTAACGGCCTCCGCTGCGAGTTGGGGCGGTCGCCATGCTTCCCGG-CCCCCACGCCCGCAGCCACTCAAATGCGCTGCATCCTAGCAGCTCGGCAGGGGCTTAGTTTAGG-CCCGCAGGCTGGGGCCGGGGAGGACATGGAGGCCGGCGGGGTCTGGGCTGAGAGAGGAGCTGCCATCAGTCACCGAGGTGGGGTAGGGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5438389 421 +   6154872 ACCACTTCTCTCTTCCCACATCCAGGTCTGGTAGAGAAGGAAGACCAGTGGCCAGGTGGCCGCTATCCGTCGTTGTCTGGGACACCGCTCACCTTCCGGCCGTTGTTAATGCCGTTGTTCC-TGTCGTCAGGACTAGGTCGGTCTCGACCAGTTGGGACAGAGCGGTCCGATCTGCCCGCGCCCCGGTGGCAGGCGACCCACCTTCCCGCGCCCTCCACACCCTAACGGCCTCCGCTGCGAGTTGGGGCGGTCGCCATGCTTCCCGGCCTCCCACGCCCGCAGCCACTCAAATGCGCTGCATCCTAGCAGCTCGGCAGGGGCTTAGTTTAGGCCCCACAGGGCTGGGCCGGG--AGGCATGGAGGCCGGCGGGGTCTGGGCTGAGAGAGGAGCTGCCATCAGTCACCGAAGTGGGGTAGGGAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29598595 419 + 172585720 ACCACTTCTCTCTTCCCACCTCCAGGTCTGGTAGAGAAGGAAGACCAGTGGCCAGATGGCCGCTATCCGTCGTTGTCTGCGACACCGCTCACCTTCCGGCC---GTTAATGCCGTTGTGCCTTGTCGTCAGGACTAGGTCGGTCTCGCCCGGTTGCGACAGAGCGGTTCAATCTGCCCGCGCCCTGGTGGCAGGCGACCCGTCTTCCCGCGCCCTCCACACTCTAATGGCCTCCGCTGCGAGTTGAGGCGGTCGCCATGCTTCCCGGCCCGCCACTCCGGCCGCCACCCAAATGCGCTGCATCCTAGCGGCTCGGCAGGGGCTTAGTTTAGGCCCTGCAGGGCTGGGCCGGG--AGACCTGGAGGCCGGCGGGGGCTGGGCTGGGAGAGGAGCTGCCATCAGTCACGGAGGTGGGGTAGGGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29259830 419 - 170955103 ACCACTTCTCTCTTCCCACCTCCAGGTCTGGTAGAGAAGGAAGACCAGTGGCCAGATGGCCGCTATCCGTCGTTGTCTGCGACACCGCTCACCTTCCGGCC---GTTAATGCCGTTGTGCCTTGTCGTCAGGACTAGGTCGGTCTCGCCCGGTTGCGACAGAGCGGTTCAATCTGCCCGCGCCCTGGTGGCAGGCGACCCGTCTTCCCGCGCCCTCCACACTCTAATGGCCTCCGCTGCGAGTTGAGGCGGTCGCCATGCTTCCCGGCCCGCCACTCCGGCCGCCACCCAAATGCGCTGCATCCTAGCGGCTCGGCAGGGGCTTAGTTTAGGCCCTGCAGGGCTGGGCCGGG--AGACCTGGAGGCCGGCGGGGGCTGGGCTGGGAGAGGAGCTGCCATCAGTCACGGAGGTGGGGTAGGGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2269873 419 -   2996164 ACCACTTCTCTCTTCCCACCTCCAGGTCTGGTAGAGAAGGAAGACCAGTGGCCAGATGGCCGCTATCCGTCGTTGTCTGCGACACCGCTCACCTTCCGGCC---GTTAATGCCGTTGTGCCTTGTCGTCAGGACTAGGTCGGTCTCGCCCGGTTGCGACAGAGCGGTTCAATCTGCCCGCGCCCTGGTGGCAGGCGACCCGTCTTCCCGCGCCCTCCACACTCTAATGGCCTCCGCTGCGAGTTGAGGCGGTCGCCATGCTTCCCGGCCCGCCACTCCGGCCGCCACCCAAATGCGCTACATCCTAGCGGCTCGGCAGGGGCTTAGTTTAGGCCCTGCAGGGCTGGGCCGGG--AGACCTGGAGGCCGGCGGGGGCTGGGCTGGGAGAGGAGCTGCCATCAGTCACGGAGGTGGGGTAGGGAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2143220 419 -   2157725 ACCACTTCTCTCTTCCCACCTCCAGGTCCGGTAGAGAAGGAAGACCAGTGGCCAGATGGCCGCTATCCGTCGTTGTCTGCGACACCACTCACCTTCCGGCC---GTTAATGCCGTTGTCCCTTGTCGTCAGGACTAGGTCAGTCTCGCTCGGTTGCGACAGAGCGGTTCAATCTGCCCGCGCCCTGGTGGCAGGCGACCCGCCTTTCCGCGCCCTCCACACCCTAATAGCCTCCGCTGCGAGTTGAGGCGGTCGCCATGCTTCCCGGCCCGCCACGCCGGCCGCCACCCAAATGCGCTGCGTCGTAGCGGCTCGGCAGGGGCTTAGTTTAGGCCCTGCAGGGCTGGGCCGGG--AGACCTGGAGGCCGGCGGGGTCTGGGCTGGGAGAGGAGCTGCCATCAGTCACCGAGGTGGGGTAGGGAAG
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2287303 419 +   2316924 ACCACTTCTCTCTTCCCACCTCCAGGTCCGGTAGAGAAGGAAGACCAGTGGCCAGATGGCCGCTATCCGTCGTTGTCTGCGACACCACTCACCTTCCGGCC---GTTAATGCCGTTGTCCCTTGTCGTCAGGACTAGGTCGGTCTCGCTCGGTTGCGACAGAGCGGTTCAATACGCCCGCGCCCTGGTGGCAGGCGACCCGCCTTCCCGCGCCCTCCACACCCTAATGGCCTCCGCTGCGAGTTGAGGTGGTCGCCATGTTTCCCGGCCCGCCACGCCGGCCGCCACCCAAATGCGCTGCGTCGTAGCGGCTCGGCAGGGGCTTAGTTTAGGCCCTGCAGGGCTGGGCCGGG--AGACCTGGAGGCCGGCGGGGTCTGGGCTGGGAGAGGAGCTGCCATCAGTCACCGAGGTGGGGTAGGGAAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2126881 419 -   3067355 ACCACTTCTCTCTTCCCACCTCCAGGTCTGGTAGAGAAGGAAGACCAGTGGCCAGATGGCCGCTATTCGGCGTTGTCTGGGACACCACTCACCTTCTGGCC---GTTAATGCCGTTGTCCCTTGTCGTCAGGACTAGGTCGGTCTCGCCCAGTTGGGACAGAGCGGTTCAATCTGCTTGCGCCCTGGTGGCAGGTGACCCGCCTTCCCGCGCTCTCCACACCCTAATGGCCTCCGCTGCGAGTTGAGGCGGTCGCCATGCTTCCCGGCCCTCCACGCCGGCCGCCACCCAAATGCGCTGCATCCTAGCGGCTCGGCAGGGGCTTAGTTTAGGCCCTGCAGGACTGGGCCGGG--AGACCTGGAGGCCGGCGGGGTCTGGGCTGGGAGAGGAGCTGCCATCAGTCACCGAGGTGGGGTAGGGAAG
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             43437155   0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=122923.000000
s hg38.chr6_GL000254v2_alt    431785 31 +   4827813 AGAGGTTCGCGGCTTCTTCAGGCCTGGGCCC
s panTro5.chr6              29412792 31 + 175400573 AGAGGTTCGCGGCTTTTTCAGGCCTGGGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             144202559 31 - 173848474 AGAGGTTCGCGGCTTTTTCAGGCCTGGGCCC
i panPan2.chr6             n 0 I 273
s gorGor5.CYUI01015250v1     5438810 31 +   6154872 AGAGGTTCGCGGCTTCTTCAGGCCTGGGCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29599014 31 + 172585720 AGAGGTTCACGGCTGCTTCAGGCCTGGGCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29260249 31 - 170955103 AGAGGTTCACGGCTGCTTCAGGCCTGGGCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2270292 31 -   2996164 AGAGGTTCACGGCTGCTTCAGGCCTGGGCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2143639 31 -   2157725 AGAGGTTCACGGCTGCTTCAGGCCTGGGCCC
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2287722 31 +   2316924 AGAGGTTCACGGCTGCTTCAGGCCTGGGCCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2127300 31 -   3067355 AAAGGTTCACAGCTGCTTCAGGCCTGGGCCC
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             43437155  0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=998536.000000
s hg38.chr6_GL000254v2_alt    431816 265 +   4827813 GCGAGGGGAGCCACAGCGAG--------------------GGCACCTGGAGCCTGCAGGGCAGAGGCTGCGGGAGGTCCTGAACCCCCAGCCCCTCCGCAGGCCCATGGTCAGCGCGTCCCACCCGGGTCTCTGCCGGAACTccacattg--tctctatccaatccaccactgatgggca---------ggcctatgtctctgctgttgtgaatagtgctgccatgaacatgagtgcgtgtgttcttttggtataatgatatattttcctttgactaaatacgcaagaatggtatt
s panTro5.chr6              29412823 264 + 175400573 GCGAGGGGAGCCACAGCGAG--------------------GGCACTTGGAGCCTGCAGGGCAGAGGCTGCGG-AGGTCCTGAACCCCCAGCCCCTCCGCAGGCCCATGGTCAGCGCGTCTCACCCGGGTCTCTGCCGGAACTccacattg--tctctatccaatccaccactgatgggca---------ggcctatgtctctgctgttgtgaatagtgctgccatgaacatgagtgcgtgtgttcttttggtataatgatatattttcctttgactaaatacgcaggaatggtatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29652105 264 + 173848474 --------------------NNNNNNNNNNNNNNNNNNNNGGCACTTGGAGCCCGCAGGGCAGAGGCTGCGG-AGGTCCTGAACCCCCAGCCCCTCCGCAGGCCCATGGTCAGCGCGTCTCACCCGGGTCTCTGCCGGAACTccacattg--tctctatccaatccaccactgatgggca---------ggcctatgtctctgctgttgtgaatagtgctgccatgaacatgagtgcgtgtgttcttttggtataatgatatattttcctttgactaaatatgcaggaatggtatt
i panPan2.chr6             C 0 I 4997
s gorGor5.CYUI01015250v1     5438841 266 +   6154872 GCGAGGGGAGCCACAGCGAG--------------------GGCACCTGGAGCCTGCAGGGCAGAGGCTGCGGGAGGTCCTGAAACCCCAGCTCCTCCGCAGGCCCATGGTCAGCGCGTCTCACCCGGGTCTCTGCCGGAACT-cacattgtctctctatccaatccaccactggtgggca---------ggcctatgtctctgctgttgtgaatagtgctgccatgaacatgagtgcgtgtgtccttttggtataatgatatattttcctttgactaaatacgcaggaatggtatt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29599045 274 + 172585720 ACGAGGGGAGCCACAGGGAG--------------------GGCGCCTGGAGCCTGCAGGGCAGAGGCTGTGGGAGGTCCTGAACCGCCAGCCCCTCCGCAGGCCCAGGGTCAGCGTGTCTCACCCGGGTCTCTGCCAGAGCTccacattg--tgtctatccaatccaccactgatgggcacctaggttgggtctatgtctctgctactgtgaatagtgctgccatgaacatgagtgcctgtgtccttttggtataatgatatattttcctttgactaaatacgcggtaatggaatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29260280 274 - 170955103 ACGAGGGGAGCCACAGGGAG--------------------GGCGCCTGGAGCCTGCAGGGCAGAGGCTGTGGGAGGTCCTGAACCGCCAGCCCCTCCGCAGGCCCAGGGTCAGCGTGTCTCACCCGGGTCTCTGCCAGAGCTccacattg--tgtctatccaatccaccactgatgggcacctaggttgggtctatgtctctgctactgtgaatagtgctgccatgaacatgagtgcctgtgtccttttggtataaagatatattttcctttgactaaatacgcggtaatggaatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2270323 274 -   2996164 ACGAGGGGAGCCACAGGGAG--------------------GGCGCCTGGAGCCTGCAGGGCAGAGGCTGTGGGAGGTCCTGAACCGCCAGCCCCTCCGCAGGCCCAGGGTCAGCGTGTCTCACCCGGGTCTCTGCCAGAGCTccacattg--tgtctatccaatccaccactgatgggcacctaggttgggtctatgtctctgctactgtgaatagtgctgccatgaacatgagtgcctgtgtccttttggtataatgatatattttcctttgactaaatacgcggtaatggaatt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2143670 274 -   2157725 ACGAGGGGAGCCACAGGGAG--------------------GGCGCCTGGAGCCTGCAGGGCAGAGGCTGTGGGAGGTCCTGAACCGCCAGCCCCTCCGCAGGCCCAGGGTCAGCGTGTCTCACCCGGGTCTCTGCCAGAACTccacattg--tctctatccaatccaccaccgatgggcacctaggttgggtctatgtctctgctactgtgaatagtgctgccatgaacatgagtgcgtgtgtccttttggtataatgatatattttcctttgactaaatacgcggtaatggaatt
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2287753 274 +   2316924 ACGAGGGGAGCCACAGGGAG--------------------GGCGCCTGGAGCCTGCGGGGCAGAGGCTGTGGGAGGTCCTGAACCGCCAGCCCCTCCGCAGGCCCAGGATCAGCGTGTCTCACCCGGGTCTCTGCCAGAACTccacattg--tctctatccagtccaccaccgatgggcacctaggttgggtctatgtctctgctactgtgaatagtgctgccatgaacatgagtgcgtgtgtccttttggtataatgatagattttcctttgactaaatacgcggtaatggaatt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2127331 274 -   3067355 ACTAGGGGAGCCACAGGGAG--------------------GGCGCCTGGAGCCTGCAGGGCAGAGGCTGTGGGAGGTCCTGAACCCCCAGCCCCTCCGCAGGCTCAGGGTCAGCGTGTCTCACCCGGGTCTCTGCCGGAACTccacattg--tctctatccaatccatcactgatgggcacctaggttgggtctatgtctctgctactgtgaatagtgctgccatgaacatgagcgtgtgtgtccttttggtacaatgatatattttcctttgactaaatacgcggtaatggaatt
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             43437155   0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=915616.000000
s hg38.chr6_GL000254v2_alt    432081 243 +   4827813 gctgggtccaatggtagctctgtttttagttcttttgg--aaaa-tctccaaactgctttccacagtggctgaactaatgttcattctcaccaacagtgta-taagcgttcgcgtttctctgcagcctccgcaatatctgttgttttttgacttttaaatagcagccattctgactggtgttagatgatatctcattgtggttttgatttgcatttctctgatgattagtaatgatgaacaattttt
s panTro5.chr6              29413087 243 + 175400573 gctaggtccaatggtagctctgtttttagttcttttgg--aaaa-tctccaaactgctttccacagtggctgaactaatgttcattctcaccaacagtgta-taagcgttcgcgtttctctgcagcctccgcaatatctgttgttgtttgacttttaaatagcagccattctgactggtgttagatgatatctcattgtggttttgatttgcatttctctgatgattagtaatgatgaacaattttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             144202863 244 - 173848474 gctgggtccaatggtagctctgtttttagttcttttgg--aaaattctccaaactgctttccacagtggctgaactaatgttcattctcaccaacagtgta-taagcgttcgcgtttctctgcagcctccgcaatatctgttgttttttgacttttaaatagcagccattctgactggtgtgagatggaatctcattgtggttttgatttgcatttctctgatgattagtaatgatgaacaattttt
i panPan2.chr6             I 273 C 0
s gorGor5.CYUI01015250v1     5439107 243 +   6154872 gctgggtccaatggtagctctgtttttagttcttttgg--aaaa-tctccaaactgctttccacagtggctgaactaatgttcattctcaccaacagtgta-taagcgttcgcgtttctctgcagcctccgcaatatctgttgttgtttgacttttaaatagcagccattctgactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatgattagtaatgatgaacaattttt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29599319 241 + 172585720 gctgggtccagtggtagctctgtttttagttcttcaaactaaaa-tctccaaactgctttccacagtggctgaactaatgttcattctcactaaccgtgtattaagcattcgcgtttctcttcagcctctgcaatatctgttgttttttgacttttaaatgacagccattctgactggtgtgagatggtatctcactgtggt-----tttgcatttctctgatgattagtgatgatgaacaattttt
i rheMac8.chr4             C 0 I 1683
s macFas5.chr4              29260554 241 - 170955103 gctgggtccagtggtagctctgtttttagttcttcaaactaaaa-tctccaaactgctttccacagtggctgaactaatgttcattctcactaaccgtgtattaagcattcgcgtttctcttcagcctctgcaatatctgttgttttttgacttttaaatgacagccattctgactggtgtgagatggtatctcactgtggt-----tttgcatttctctgatgattagtgatgatgaacaattttt
i macFas5.chr4             C 0 I 1683
s macNem1.NW_012011356v1     2270597 246 -   2996164 gctgggtccagtggtagctctgtttttagttcttcaaactaaaa-tctccaaactgctttccacagtggctgaactaatgttcattctcactaaccgtgtattaagcgttcgcgtttctcttcagcctctgcaatatctgttgttttttcacttttaaatgacagccattctgactggtgtgagatggtatctcactgtggttttgatttgcatttctctgatgattagtgatgatgaacaattttt
i macNem1.NW_012011356v1   C 0 I 1683
s cerAty1.NW_012001495v1     2143944 246 -   2157725 gctgggtccagtggtggttctgtttttagttctccaaactaata-tctccaaactgctttccacagtggctgaactaatgttcattctcaccaacagtgtattaagcgttcgcgtttctcttcagcctctgcaatatctgttgttttttgacttttaaatgacagccattctgactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatgattagtgatgacgaacaattttt
i cerAty1.NW_012001495v1   C 0 C 0
s manLeu1.NW_012104165v1     2288027 246 +   2316924 gctgggtccagtggtagttctgtttttagttctccaaactaaaa-tctccaaactgctttccacagtggctgaactaatgttcattctcaccaacagtgtattaagcgttcgcgtttctcttcagcctctgcaatatctgttgttttttgacttttaaatgacagccattctgactggtgtgagatggtatctcattgtggttttgatttgcatttctctgattattagtgatgacgaacacttttt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2127605 246 -   3067355 gctgggtccagtggtagctctgtttttagttctccaaactaaaa-tctccaaactgctttccacagtggctgaactaatgttcattttcaccaacagtgtattaagcgttcgcgtttctcttcagcctctgcaatatctgttgttgtttgacttttaaatgacagccattctgaccggtgtgagatggtatctcattgtggttttgatttgcatttctctgatgattagtggtaatgaacagttttt
i colAng1.NW_012115566v1   C 0 I 1946
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e chlSab2.chr17             43437155   0 +  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=10505.000000
s hg38.chr6_GL000254v2_alt    432324 2 +   4827813 tc
s panTro5.chr6              29413330 2 + 175400573 tc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             144203107 2 - 173848474 tc
i panPan2.chr6             C 0 n 0
s gorGor5.CYUI01015250v1     5439350 2 +   6154872 tc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29601243 2 + 172585720 tc
i rheMac8.chr4             I 1683 C 0
s macFas5.chr4              29262478 2 - 170955103 tc
i macFas5.chr4             I 1683 C 0
s macNem1.NW_012011356v1     2272526 2 -   2996164 tc
i macNem1.NW_012011356v1   I 1683 C 0
s cerAty1.NW_012001495v1     2144190 2 -   2157725 tc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28560080 2 -  71996105 tc
i chlSab2.chr17            I 5244 C 0
s manLeu1.NW_012104165v1     2288273 2 +   2316924 tc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2129797 2 -   3067355 tc
i colAng1.NW_012115566v1   I 1946 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=8190.000000
s hg38.chr6_GL000254v2_alt    432326 2 +   4827813 at
s panTro5.chr6              29413332 2 + 175400573 at
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5439352 2 +   6154872 at
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29601245 2 + 172585720 at
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29262480 2 - 170955103 at
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2272528 2 -   2996164 at
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2144192 2 -   2157725 at
i cerAty1.NW_012001495v1   C 0 I 6263
s chlSab2.chr17             28560082 2 -  71996105 at
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2288275 2 +   2316924 at
i manLeu1.NW_012104165v1   C 0 I 2569
s colAng1.NW_012115566v1     2129799 2 -   3067355 at
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T
e panPan2.chr6             144203109 0 - 173848474 I

a score=1571488.000000
s hg38.chr6_GL000254v2_alt    432328 673 +   4827813 ctagacagaaatcaatagggaaacactagacttgacatacactttggaccaaatggacctaa-agacgt-tatagaacatttcatccaacagcaacagaat----attcattcttctcaagtgcaaatgagacattatccaggatcaaatattaggtaacaaaataagactcaacaattttaa--------gaagattgaaatcatatcaagtatcttttctgaccacaaaattatgaaagtagaaatgaatagaaataaataataggggaaaatttgaaaatattacaaatgtggaaattaaccaacatgctcttgaataaacaa----tgggttaatgaagaaatcaaag-ggaagttaaaaaatatcttaagacagatgaaaatgaaaatgcaacgtaccacaacttatgggatgtaacaaaagaagttcttagcaggaggaaagtttatagtaataaatgccgatattgaaaaagaagaaagatct----caaacaacctaatgttacatttcaagaaactagaaaaagagaagagcaaactaatcccaaatttagcagaaggaaggaaataacaaagatcagagcagaaataagtaagagattagaaaacaaaagaacacatttgcaaaactaacagttcagtttttgaaaagataaaaacaattgacaaaactttagcagaccaactaag
s panTro5.chr6              29413334 673 + 175400573 ctagacagaaatcaataaggaaacactagacttgacatacactttggaccaaatggacctaa-agacgt-tatagaacatttcatccaacagcaacagaat----attcattcttctcaagtgcaaatgagacattatccaggatcaaatattaggtaacaaaataagactcaacaattttaa--------gaagattgaaatcatatcaagtatcttttctgagcacaaaattatgaaagtagaaatgaatagaaataaataataggagaaaatttgaaaatattacaaatgtggaaattaaccaacatgctcttgaataatgaagttacgggttaatgaagaaatcaaag-ggaagttaaaaaatatcttaagacagatgaaaatgaaaatgcaacgtaccacaacttatgggatgtaacaaaag---ttcttagcaggaggaaagtttatagtaataaatgccgatattaaaaaagaagaaagatct----caaacaacctaatgttacatttcaagaaactagaaaaagagaagagcaaactaatcc-aaagttagcagaaggaaggaaataacaaagatcagagcagaaataagtaagagactagaaaacaaaagaacacatttgcaaaactaacagttcagtttttgaaaagataaaaacaattgacaaaactttagcagaccaactaag
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5439354 673 +   6154872 ctagacagaaatcaataaggaaacactagacttgacatacactttggaccaaatggacctaa-agacgt-tatagaacatttcatccaacagcaacagaat----attcattcttctcaagtgcaaatgagacattatccaggatcaaatattaggtaacaaaataagactcaacaattttaa--------gaagattgaaatcatatcaagtatcttttctgagcacaaaattatgaaagtagaaatgaatagaaataaataataggagaaaatttgaaaatattacaaatgtggaaattaaccaacatgctcttgaataaacaa----tgggttaatgaagaaatcaaag-ggaagttaaaaaatatcttaagacagatgaaaatgaaaatgcaacgtaccacaacttatgggatgtaacaaaagaagttcttagcaggaggaaagtttatagtaataaatgctgatattaaaaaagaagaaagatct----caaacaacctaatgttacatttcaagaaactagaaaaagagaagagcaaactaatcccaaagttagcagaaggaaggaaataacaaagatcagagcagaaataagtaagagactagaaaacaaaagaacacatttgcaaaactaacagttcagtttttgaaaagataaaaacaattgacaaaactttagcagaccaactaag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29601247 673 + 172585720 ctagacaaaaatcaataaggaaacactggacttgacatacactttagaccaaatggacctaacagacatatatagaatatttcatccaacagcaacagaat----attcattcttctcaagtgcaaatgggacattatccaggatcaaatattaggtaacaaaataagattcaataattttaagaagattggaagattgaaatcatatcaagtatcttttctgaccacaaaagtatgaaagtagaaatgaatag----aaataataggagaaagtttgaaaatattacaaacatggaaattaaccaacatgctcttgaataaacaa----tgggttaatgaagaaatcaaaatagaaattaaaaaatatcttaagacagatgaaaatgaaaacacaatgtaccacaacttgtgggaggtaacaaaagaagttcttagcaggaggaaagtttatagtagtaaatgcctatattaaaaaagaagaaagatcc----caaacaacctaatgttacatttcaagaaactagaaaaagagaa---caaacaaatcccaaagttagcagaaggaaggaaataacaaagatcagagcagaaataaataagagactacaaaacaaaagaacacgttcacaa----aacagtttggtttttgaaaagacaaaaacaattgacaaaactttagtagaccaactaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29262482 677 - 170955103 ctagacaaaaatcaataaggaaacactggacttgacatacactttagaccaaatggacctaacagacatatatagaacatttcatccaacagcaacagaat----attcattcttctcaagtgcaaatgggacattatccaggatcaaatattaggtaacaaaataagattcaacaattttaagaagattggaagattgaaatcatatcaagtatcttttctgaccacaaaagtatgaaagtagaaatgaatag----aaataataggagaaagtttgaaaatattacaaacatggaaattaaccaacatgctcttgaataaacaa----tgggttaatgaagaaatcaaaatagaaattaaaaaatatcttaagacagatgaaaatgaaaacacaatgtaccacaacttgtgggaggtaacaaaagaagttcttagcaggaggaaagtttatagtagtaaatgcctatattaaaaaagaagaaagatcccaaacaaacaacctaatgttacatttcaagaaactagaaaaagagaa---caaacgaatcccaaagttagcagaaggaaggaaataacaaagatcagagcagaaataaataagagactacaaaacaaaagaacacattcacaa----aacagtttggtttttgaaaagacaaaaacaattgacaaaactttagtagaccaactaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2272530 677 -   2996164 ctagacaaaaatcaataaggaaacactggacttgacatacactttagaccaaatggacctaacagacatatatagaacatttcatccaacagcaacagaat----attcattcttctcaagtgcaaatgggacattatccaggatcaaatattaggtaacaaaataagattcaacaattttaagaagattggaagattgaaatcatatcaagtatcttttctgaccacaaaagtatgaaagtagaaatgaatag----aaataataggagaaagtttgaaaatattacaaacatggaaattaaccaacatgctcttgaataaacaa----tgggttaatgaagaaatcaaaatagaaattaaaaaatatcttaagacagatgaaaatgaaaacacaatgtaccacaacttgtgggaggtaacaaaagaagttcttagcaggaggaaagtttatagtagtaaatgcctatattaaaaaagaagaaagatcccaaacaaacaacctaatgttacatttcaagaaactagaaaaagagaa---caaacgaatcccaaagttagcagaaggaaggaaataacaaagatcagagcagaaataaataagagactacaaaacaaaagaacacattcacaa----aacagtttggtttttgaaaagacaaaaacaattgacaaaactttagtagaccaactaag
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28560084 678 -  71996105 ctagacaaaagtcaataaggaaacactggacttgac--acactttagaccaaatggacctaacagacatatacagaacatttcatccaacagcaacagaatattcattcattcttcttaagtgc-aatgggacattatccaggatcaaatattaggtaacaaaataagattcaacaattttaagaagattggaagattgaaatcatatcaagtatcttttctgaccacaaaagtatgaaagtagaaatgaatag----aaataataggagaaagtttgaaaatattacaaacatggaaattaaccaacatgctcttgaataaacaa----tgggttaatgaagaaatcaaaatagaaattaaaaaatatcttaagacagatgaaaatgaaaacacaatgtaccacaacttatgggaggtaacaaaagaagttcttagcaggaggaaagtttatagtaataaatgcctatattaaaaaagaagaaagatcc----caaacaacctaacgttacatttcaagaaactagaaaaagagaa---caaacgaatcccaaagttagcagaaggaaggaaataacaaagatcagagcagaaataaataagagactacaaaacaaaagaacacattcacaaaactaacagttcggtttttgaaaagacaaaaacaattgacaaaactttagtagaccaactaag
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     2129801 681 -   3067355 ctagacaaaaatcaataaggaaacactggacttgacatacactttagaccaaatggacctaacagacatatatagaaaatttcatccaacagcaacggaat----attcattcttctcaagtgcaaatggtacgttatccaggatcaaatattaggtaacaaaataagactcaacaattttaagaacattggaagattgaaatcatatcaagtatcttttctgaccacaaaaatatgaaagtagaaatgaatag----aaataataggagaaagtttgaaaatgttacaacaatggaaattaaccaacatactcttgaataaacaa----tgggttaatgaagaaatcaaaagggaaattaaaaaatatctgaagacagatgaaaatgaaaacacaatgtaccacaacttatgggaggtaacaaaagaagttcttagcaggaggaaagtttatagtaataaatgcctatattaaaaaagaagaaagatcccaaacaaacaacctaatgttacatttcaagaaactagaaaaagagaa---caaagaaatcccaaagttagcagaaggaaggaaataacaaagatcagagcagaaataaataagagactacaaaacaaaagaacacattcacaaaactaacagttcggtttttgaaaagacaaaaacaattgacaaaaccttagtagaccaactaag
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e manLeu1.NW_012104165v1     2288277 2569 +   2316924 I
e cerAty1.NW_012001495v1     2144194 6263 -   2157725 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T
e panPan2.chr6             144203109   0 - 173848474 I

a score=3307636.000000
s hg38.chr6_GL000254v2_alt    433001 1056 +   4827813 aaaaaaaagaagactctaataaaataagaaatgaaagaggagacattaaaattgaaactacgcaagtacaaaagatcataaaagaatactacgaacaattttacaccaacaaataggatgacctagaagaaatggttagatttccagaaacataacaacaatgaattatgaaaaaatagaaaatctgaacagactaatgagtaagggggttgaatcagtgataaaagtctcctaccaaagaaaagcccagaacctgatggttcatggattggaggaattaatattattaaaatgtctgtgctgctgaaagtggtatacagattcaatgcaattcctataaaagttctaatgacctttttgtttcacagaaatagaaaaagcaattcaaaaattcatatggaatgac--aaaaatcttaagtagctaaagcacttttgagcaaaaagaccagagctggaggcatcacactacctgattaaagatatattacaaagttatagtattcaaaacagaaaggtactggcataacaacagacacatggaccaatgtaatgtgatagagagcccagacataaactcatgcatttgtgattaattgatttttgccaaagatgccaagaataaacacactatggggaaaggacagtttctttaataaatgatgcaggggaaatcaaatacccacatacagaagaatgaaattgaacccttatctcacaccatgtgtaaaaagcccactaaaaatggtttaaagatttaaa-tgcgagacctgaaaatgtaaaactactagaagaaagcatagggaaaaatgtccctgaaattaatcttggcaatactttcttggtgatgatctcaaaagctcaggaaaccaaagcagaagtagacaaatgggattacctgaaaccaaaagcttctctacaacaaagtaaataacagattgaagagacaacccatggactgggagaaaatatttacaaaccatacatggctaatatccaaaatatgtaagaaatgcaaacaacttaaatttgttagcaagaaaacaaataacgccattt
s panTro5.chr6              29414007 1048 + 175400573 aaaaaaaagaagactctaataaaataagaaatgaaagaggagacattaaaattgaaactacagaagtacaaaagatcataaaagaatactacgaacaattttacaccaacaaataggatgacctagaagaaatggttagatttccagaaacataacaacaatgaatcatgaaaaaatagaaaatctgaacagactaatgagtaagggggttgaatcagtgataaaagtctcctaccaaagaaaagcccagaacctgatggttcatggattggaggaattaatattattaaaatgtctgtgctgctgaaagtggtatacagattcaatgcaattcctataaaagttctaatgacctttttgtttcacagaaatagaaaaagcaattcaaaaattcatatggaatgac--aaaaatcttaa--------agcacttttgagcaaaaagaccagagctggaggcatcacactacctgattaaaaatatattacaaagttatagtattcaaaacagaagggtactggcataacaacagacacatggaccaatgtaatgtgatagagagcccagacataaactcatgcatttgtgattaattgatttttgccaaagatgccaagaataaacacactatggggaaaggacagtttctttaataaatgatgcaggggaaatcaaatacccacatacagaagaatgaaattgaacccttatctcacaccatgtgtaaaaagcccactaaaaatggtttaaagatttaaa-tgcgagacctgaaaatgtaaaactactagaagaaagcatagggaaaaatgtccctgaaattaatcttggcaatactttcttggtgatgatctcaaaagctcaggaaaccaaagcagaagtagacaaatgggattacctgaaaccaaaagcttctctacaacaaagtaaataacagattgaagagacaacccatggactgggagaaaatatttacaaaccatacatggctaatatccaaaatatgtaagaaatgcaaacaacttaaatttgttagcaagaaaacaaataatgccattt
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5440027 1056 +   6154872 aaaaaaaagaagactctaataaaataagaaatgaaagaggagacattaaaattgaaactacacaagtacaaaagatcataaaagaatactatgaacaattttacaccaacaaataggatgacctagaagaaatggttagatttctagaaacataacaacaatgaatcataaaaaaatagaaaatctgaacagactaatgagtaagggggttgaatcagtgataaaagtctcctaccaaagaaaagcccagaacctcatggttcatggattggaggaattaatattattaaaatgtctgtgctgctgaaagtggtatacagattcaatgcaattcctataaaagttctaatgacc-ttttgtttcacagaaatagaaaaagcaattcaaaaattcatatggaatgac-aaaaaatcttaagtagctaaagcacttttgagcaaaaagaccagagctggaggcatcacactacctgattaaaaatatattacaaagttatagtattcaaaacagaaaggtactggcataacaacagacacatggaccaatgtaatgtgatagagatcccagacataaactcatgcatttgtgattaattgatttttgccaaagatgccaagaataaaaacactatggggaaaggacagtttctttaataaatgatgcaggggaaatcaaatacccacatacagaagaatgaaattgaacccttatctcacaccatgtgtaaaaagtccactaaaaatggtttaaagatttaaa-tgcgagacctgaaaatgtaaaactactagaagaaagcatagggaaaaatgtccctgaaattaatcttggcaatactttcttggtgatgatctcaaaagctcaggaaaccaaagcagaagtagacaaatgggattacctgaaaccaaaagcttctctacaacaaagtaaataacagattgaagagacaacccatggactgggagaaaatatttacaaaccatacatggctaatatccaaaatatgtaagaaatgcaaacaacttaaatttgttagcaagaaaacaaataacgccattt
i gorGor5.CYUI01015250v1   C 0 I 315
s rheMac8.chr4              29601920 1054 + 172585720 -agaaaaagaagactctaataaaataagaaatgaaagaggagacattaaaattgaaactacagaagtacaaaagatcat-aaataatactatgaacagtttaacaccaacaaataagatgatctagaagaaatggttagatttctagaaacataacaagaatgaatcacgaaaaaatagaaaatctgaacagactaatgagtaaggaggttgaatcagtgataaaagtctcctaccaaagaaaagcccagaacctgatggttcatggattggaggaattaatattattaaaatgtctgtactgccaaaagtggtatacagattcaatgcaattcctataaaagttctaatgacctttttgtttcacagaaatagaaaaagcaattcaaaaattcatatggaatgac-aaaaaatcttaagtggctaaagcacttctgagcaaaaagaacagagctggaggcgtaacactacctgattcaaaatatattacaaagttatagtattcgaaacagaaaagtactggcataacaacagacacatggaccaatgtaacatgatagagagcccagacataaactcatgtatttgtgattaattgatttttaccaaagatgccaagaataagcacactatggggaaaggacagtttctttaataaataatgctggggaaatcgaatacccacatacagaagaatgaaattgaaccattatctcacatcatatgtgcaaagtccactaaaaatggtttaaagatttaaa-ttcgagacctgaaaatgtaaaactactagaagaaaacatagggaaaaatgtccttgaaattaatcttggcaatactttcttggtgatgatctcaaaagctcgggaaaccaaagcagaagtagccaaacgggattacttcaaaccaaaagcttccctacaacaaagtaaataacagattgaagagacaacccatagactgggagaaaatatttacaaatcatacatggctaatatccaaaatatgtaagaaatgcaaacaactt-gatttgttagcaagaaaacaaagaaccccattt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29263159 1054 - 170955103 -agaaaaagaagactctaataaaataagaaatgaaagaggagacattaaaattgaaactacagaagtacaaaagatcat-aaataatactatgaacagtttaacaccaacaaataagatgatctagaagaaatggttagatttctagaaacataacaagaatgaatcacgaaaaaatagaaaatctgaacagactaatgagtaaggaggttgaatcagtgataaaagtctcctaccaaagaaaagcccagaacctgatggttcatggattggaggaattaatattattaaaatgtctgtactgccgaaagtggtatacagattcaatgcaattcctataaaagttctaatgacctttttgtttcacagaaatagaaaaagcaattcaaaaattcatatggaatgac-aaaaaatcttaagtggctaaagcacttttgagcaaaaagaacagagctggaggcataacactacctgattcaaaatatattacaaagttatagtattcaaaacagaaaagtactggcataacaacagacacatggaccaatgtaacatgatagagagcccagacataaactcatgtatttgtgattaattgatttttaccaaagatgccaagaataagcacactatggggaaaggacagtttctttaataaataatgctggggaaatcgaatacccacatacagaagaatgaaattgaaccattatctcacaccatatgtgcaaagtccactaaaaatggtttaaagatttaaa-ttcgagacctgaaaatgtaaaactactagaagaaaacatagggaaaaatgtccttgaaattaatcttggcaatactttcttggtgatgatctcaaaagctcgggaaaccaaagcagaagtagccaaacgggattacttcaaaccaaaagcttccctacaacaaagtaaataacagattgaagagacaacccatagactgggagaaaatatttacaaatcatacatggctaatatccaaaatatgtaagaaatgcaaacaactt-gatttgttagcaagaaaacaaagaaccccattt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2273207 1041 -   2996164 -agaaaaagaagactctaataaaataagaaatgaaagaggagacattaaaattgaaactacagaagtacaaaagatcat-aaataatactatgaacagtttaacaccaacaaataagatgatctagaagaaatggttagatttctagaaacataacaagaatgaatcacgaaaaaatagaaaatctgaacagactaatgagtaaggaggtcgaatcagtgataaaagtctcctaccaaagaaaagcccagaacctgatggttcatggattggaggaattaatattattaaaatgtctgtactgccgaaagtggtatacagattcaatgcaattcctataaaagttctaatgacctttttgtttcacagaaatagaaaaagcaattcaaaaattcatatggaatgacaaaaaaatcttaagtggctaaagcacttttgagcaaaaagaacagagctggaggcataacactacctgattcaaaatatattacaaagttatagtattcgaaacagaaaagtactggcataacaacagacacatggaccaatgtaacatgatagagagcccagacataaactcatgtatttgtgattaattgatttttaccaaagatgccaagaataagcacactatggggaaaggacagtttctttaataaataatgctggggaaattgaatacccacatacagaagaatgaaattgaaccattatctcacaccatatgtgcaaagtccactaaaaatggtttaaagatttaaa-ttcgagacctgaaaatgtaaaactactagaagaaaacatagggaaaaatgtccttgaaattaatcttggcaatactttcttggt--------------ctcgggaaaccaaagcagaagtagccaaacgggattacttcaaaccaaaagcttccctacaacaaagtaaataacagattgaagagacaacccatagactgggagaaaatatttacaaatcatacatggctaatatccaaaatatgtaagaaatgcaaacaactt-gatttgttagcaagaaaacaaagaaccccattt
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28560762 1054 -  71996105 -agaaaaagaagactctaataaaataagaaatgaaagaggagacattaaaattgaaactacagaagtacaaaagatcat-aaataacactatgaacagttttacaccaacaaataagatgacctagaagaaatggttagatttctagaaacataacaagaatgaatcatgaaaaaatagaaaatctgaacagactaatgagtaaggaggttgaatcagtgataaaagtctcctaccaaagaaaagcccagaacctgatggttcatggattggaggaattaatattattaaaatgtctgtactgccgaaagtggtatacagattcaatgcaattcctataaaagttctaatgacctttttgtttcacagaaatagaaaaagcaattaaaaaattcatatggaatgat-aaaaaatcttaagtggctaaagcacttttcagcaaaaagaatagagctggaggcatcacactacctgattcaaaatatattacaaagttatagtattcagaacagaaaagtactggcataacaacagacacatggaccaatgtaacatgatagagagcccagacataaactcatgtatttgtgattaattgatttttgccaaagatgccaagaataagtacactatggggaaaggacagcttctttaataaataatgctggggaaatcgaatacccacatacagaagaatgaaattgaaccattatctcacaccatatgtgcaaagtccactaaaaatggtttaaagatttaaa-ttcgagacctgaaaatgtaaaactactagaagaaaacatagggaaaaatgtccttgaaattaatcttggcaatactttcttggtgatggtctcaaaagctcgggaaaccaaagcagaagtagccaaacgggattacctcaaaccaaaatcttctctacaacaaagtaaataacagattgaagagacaacccatagactgggagaaaatatttacaaatcatacatggctaatatccaaaatatgtaagaaatgcaaagaactt-gatttgttagcaagaatacaaagaaccccattt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2290846 1056 +   2316924 aaaaagaagacgactctaataaaataagaaatgaaagaggagacattaaaatggaaactacagaagtacaaaagatcat-aaataatactatgaacagttttacaccaacaaataagatcacctagaagaaatggttagatttctagaaacataacaagaatgaatcacgaaaaaatagaaactctgaacagactaatgagtaaggaggttgaatcagtgataaaagtctcctaccaaagaaaagcccagaacctgatggttcatggattggaagaattaatattattaaaatgtctgtactgccaaaagtggtatacagattcagtgcaattcctataaaagttctaatgacctttttgtttcacagaaatagaaaaagcaattcaaaaattcatatggaatgac-aaaaaatcttaagtggctaaagcagttttgagcaaaaagaacagagctggaggcatcacagtacctgattcaaaatatattacaaagttatagtattcaaaacagaaaagtactggcataacaacagacacatggaccaatgtaacatgatagagagtccagacataaactcatgtatttgtgattaattgatttttgccaaagatgccaagaatgagcacactatggggaaaggacagtttctttaataaataatgctggggaaatcgaatacccacatacagaagaatgaaattgaaccattatctcacaccatatgtgcaaagtccactaaaaatggtttaaagatttaaatttcgagacctgaaaatgtaaaactactagaagaaaacatagggaaaaatgtccttgaaattaatcttggcaatactttcttggtgatgatctcaaaagctcgggaaaccaaagcagaagtagccaaacgggattacctcaaaccaaaagcttctctacaacaaagtaaataacagattgaagagacaacccatagactgggagaaaatatttacaaatcatacatggctaatatccaaaatatgtaagaaatgcaaacaactt-gatttgttagcaagaaaacaaagaaccccattt
i manLeu1.NW_012104165v1   I 2569 C 0
s colAng1.NW_012115566v1     2130482 1052 -   3067355 aaaaaaaagaagactctaataaaataagaaatgaaagaggagacattaaaattgaaactacagaggtacaaaagatcat-aaataatactatgaacagttttacaccaacaaataagatgacctagaagaaatggttagatttctagaaacataacaagaatgaatcacggaaaaacagaaaatctgaacagactaatgagtaaggaggttgaatcagtgataaaagtctcctaccaaagaaaagcccagaacctgatagttcatggattggaggaattaatattattaaaatgtctgtactgccgaaagtggtatacagattcaatgcaattcttataaaagttctaatgacctttttgtttcacagaaatagaaaaagcaattcaaaaattcatatggaatgac--aaaaatcttaagtagctaaagcacttttgagcaaaaagaacagagctggaggcatcacactacttgattcaaaatatattacaaagttatagtattcaaaacagaaaagtactggcataacaacagacacatggaccaatgtaacatgatagagagcccagacataaactcatgtatttgtgattaattgatttttgccaaagatgccaagaataagcacactatggggaaaggacagtttctttgataaatgatgctggggaaatcgaatacccacatacagaataatgaaattgaacccttatctcacaccatatgtgcaaagtccactaaaaatggtttaaagatttaaa-ttcgagacctgaaaatgtaaaactactagaagaaaac--agggaaaaatgtctttgaaattaatcttggcaatactttcttggtgatgatctcaaaagctcaggaaaccaaagcagaagtagccaaacgggattacctcaaaccaaaagcttctctacaacaaagtaaataacagattgaagagacaacccatagactgggagaaaatatttacaaatcatacatggctaatatccaaaatatataagaaatgcaaacaactt-aatttgttagcaagaaaacaaagaaccccattt
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e cerAty1.NW_012001495v1     2144194 6263 -   2157725 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T
e panPan2.chr6             144203109    0 - 173848474 I

a score=1758925.000000
s hg38.chr6_GL000254v2_alt    434057 574 +   4827813 aaaactgagcaatggacttgaatggacatctttcaaaagaccaatagatatataaaaaagtgtct--acatcactaatcatcagggaaatgcaaattaaaacaaaacaaagagatatcacctcatacctgttagaatgactattatcagtaaactaaaaggtaataagtactgacaaggatgtggggaatccttatatactaatggcaggaaagtaaattaatacaggcattattgaaatcagcatggagattcctcaaaaaactaaagatagaattaccataggatctagcaattatatttctggatacatagccaaagagattgaaatttgtattttaaaaatatgttggagaccagcctgaccaatatggtgaaaccccatctctactaaaaatacaaaaaaattagccggctgtggtttgcacctgtagtcccagctattcaggtggctgagacaggagaattgcttgaacctgggaggccaagtttgcagtgagctgagattatgccactgcactccagcctgggctacagagcaagactccatctcaaaaaaaaaaaaaaa-------------------TGGGTAGat
s panTro5.chr6              29415055 576 + 175400573 aaaactgagcaatggacttgaatggacatctttcaaaagaccaatagatatataaaaaagtgtct--acatcactaatcatcagggaaatgcaaattaaaacaaaacaaagagatatcacctcatacctgttagaatgactattatcaataaactaaaaggtaataagtactgacaaggatgtggggaatccttatatactaatggcaggaatgtaaattaatacaggcattattgaaatcagcatggagattcctcaaaaaactaaagacagaattaccataggatctagcaattatatttctggattcatagccaaagagattgaaatttgtattttaaaaatatgttagagaccagcctgaccaatatggtgaaaccccatctctactaaaaatacaaaaaaattagccgggtgtggtttgcacctgtagtcccagctattcaggtggctgagacaggagaattgcttgaacctgggaggccaagtttgcagtgagctgagattatgccactgcactccagcctgggctacagagcaagactccatctcaaaaaaaaaaaaaaa-----------------aaTGGGTAGat
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5441398 593 +   6154872 aaaactgagcaatggacttgaatggacatctttcaaaagaccaatagatatataaaaaagtgtct--acatcactaatcatcagggaaatgcaaattaaaacaaaacaaagagatatcacctcatacctgttagaatgactattatcaataaactaaaaggtaataagtactgacaaggatgtggggaatccttatatactaacggcaggaatgtaaattaatacaggcattattgaaatcagcatggagattcctcaaaaaactaaagatagaattaccataggatctagcaattatatttctggatacatagccaaagagattgaaatttgtatgttaaaaatatgttagagaccagcctgaccaatatggtgaaaccccatctctactaaaaatacaaaaaaattagctgggtgtggtttgcacctgtagtcccagctattcaggtggctgagacaggagaattgcttgaacctgggaggccaagtttgcagtgagctgagattatgccactgcactccagtctgggctacagagcaagactccatctcaaaaaaaaaaaaaaaaaaaaaaaCACACACAAAATGGGTAGat
i gorGor5.CYUI01015250v1   I 315 C 0
s rheMac8.chr4              29602974 568 + 172585720 aaaactgagcaatggacttgaatggacatctttcaaaagaccaatagctatatacaaaaatttttcaatatcactagtcatcagggaaatgcaaattaaagc--cacaaagagatatcacctcatacctgttagaatgactattatcaataaactaaaaggtaataagtactgacaaggatgtggggaatccttatatactaatggcaggaatgtaaattaatacaggcattattgaaatcagcatggagattcctcaaaaaactaaagatagaattaccatataatccagcaatcacatttctgggtacatagccaaagagattgaaatttgtatgtTACAAATATgttagagaccagcctgaccaatatggtgaaaccccatctctactaaaaatacaaaaaaattagcagggtgtggtttgcacctgtagtcccagctactcaggtgactgagacaggataattgcttgaacctgggaggcgaagtttgcagtgaactgagattgtgccactgcactccagcctgggctacggagcaagactctatctc-----aaaaaaaaaa--------------------GGTCAGat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29264213 568 - 170955103 aaaactgagcaatggacttgaatggacatctttcaaaagaccaatagctatatacaaaaatttttcaatatcactagtcatcagggaaatgcaaattaaagc--cacaaagagatatcacctcatacctgttagaatgactattatcaataaactaaaaggtaataagtactgacaaggatgtggggaatccttatatactaatggcaggaatgtaaattaatacaggcattattgaaatcagcatggagattcctcaaaaaactaaagatagaattaccatataatccagcaatcacatttctgggtacatagccaaagagattgaaatttgtatgtTACAAATATgttagagaccagcctgaccaatatggtgaaaccccatctctactaaaaatacaaaaaaattagcagggtgtggtttgcacctgtagtcccagctactcaggtgactgagacaggataattgcttgaacctgggaggcgaagtttgcagtgaactgagattgtgccactgcactccagcctgggctacggagcaagactctgtctc-----aaaaaaaaaa--------------------GGTCAGat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2274248 568 -   2996164 aaaactgagcaatggacttgaatggacatctttcaaaagaccaatagctatatacaaaatttttttaatatcactagtcatcagggaaatgcaaattaaagc--cacaaagagatatcacctcatacctgttagaatgactattatcaataaactaaaaggtaataagtactgacaaggatgtggggaatccttatatactaatggcaagaatgtaaattaatacaggcattattgaaatcagcatggagattcctcaaaaaactaaagatagaattaccatataatccagcaatcacatttctgggtacatagccaaagagattgaaatttgtatgtTACAAATATgttagagaccagcctgaccaatatggtgaaaccccatctctactaaaaatacaaaaaaattagcagggtgtggtttgcacctgtggtcccagctactcaggtgactgagacaggataattgcttgaacctgggaggcgaagtttgcagtgaactgagattgtgccactgcactccagcctgggctacggagcaagactctatctc-----aaaaaaaaaa--------------------GGTCAGat
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28561816 567 -  71996105 aaaactgagcaatggacttgaatggacatctttcaaaagaccaatagctatatacaaaagtttttcaatatcactaatcatcagggaaatgcaaattaaaac--cacaaagagatatcacctcatacctgttagaatgactgttatcaaaaaactaaaaggtaataagtactgacaaggatgtggggaatccttatatactaatggcaggaatgtaaattaatacaggcattattgaaatcagcatggagattcctcaaaaagctaaagatagaattaccatataatccagcaatcacatttctgggtacatagccaaagagattgaaatttgtattttaaaaatatgttagagaccagcctgaccaatatggtgaaaccccatctctactaaaaatacaaaaaaattagcagggtgtggtttgcacctgtagtcccagctactcaggtgactgagacaggataattgcttgaacctgggaggcgaagtttgcagtgaactgagattgtgccactgcactccagcctgggctacggagcgagactctatctc------aaaaaaaaa--------------------ggtcAGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2291902 566 +   2316924 aaaactgagcaatggacttgaatggacatctttcaaaagaccaatagctatatacaaaaatttttcaatatcactaatcatcagggaaatgcaaattaaaac--cacaaagagatatcacctcatacctgttagaatgactattatcaataaactaaaaggtaataagtactgacaaggatgtggggaatccttatatactaatggcaggaatgtaaattaatacaggcattattgaaatcagcatggagattcctcaaaaaactaaagatagaattaccatataatccagcaatcatatttctgggtacatagccaaagagattgaaatttgtatgttaaaaatatgttagagaccagcctgaccaatgtggtgaaaccccgtctctactaaaaatacaaaaaaattagcagggtgtggtttgcacctgtagtcccagctactcaggtgactgagacaggataattgcttgaacctgggaggcgaaggttgcagtgaactgagattgtgccactgcactccagcctgggctacggagcgagactctatctc-------aaaaaaaa--------------------GGTCAGat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2131534 566 -   3067355 aaaactgagcaatggacttgaatggacagccttcaaaagaccaatagctacatacaaaaatttttcaatatcactaatcatcagggaaatgcaaattaaaac--tatgaagagatatcacctcatacctgttagaatgactattatcaataaactaaaaggtaataagtactgacaaggatgtggggaatccttatatactaatggcaggaatgtaaattaatacaggtattattgaaatcagcatggagattcctcaaaaaactaaaaatagaattaccatataatccagcaatcatatttctgggtacatagccaaagagattgaaatttgtatgttaaaaatatgttagagaccagcctgaccaatatggtgaaaccccatctctactaaaaatacaaaaaaattagcagggtgtggtttgcacctgtagtcccagctactcaggtgactgagacaggataattgcttgaacctgggaggcgaaggttgcagtgaactgagattgtgtcactgcactccagcctgggctatggagcgagactgtatctc-------aaaaaaaa--------------------GGTCAGat
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e cerAty1.NW_012001495v1     2144194 6263 -   2157725 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T
e panPan2.chr6             144203109   0 - 173848474 I

a score=2362662.000000
s hg38.chr6_GL000254v2_alt    434631 628 +   4827813 tttcctctaatttggttttaacgtctctctttgaagagtggctagaaactctagcctggctctgatgggctccagtggag------gtggttgtggttgtggatgttttcggtgttcttttcatggaatacttccttatcctgatggagagctaatgcctaattgtcctatttatgaccaggtgtccctctcactggaaacttgttttcactggcagacaccattgtggcttttgtctgactagtgtgtccagttcattcctaccaagattgccactctctaagggagccttgtccagaaaaaaaaattaatttcaggtgtgtc----aggtgagacgccaagaagacacat----------------------aaaaaaaaata-----gtataagtagttttattacttaaagattccagagagaagagggcaacttgcctcacaggcctaatgggagaaagggcatcccttagagacatgcatgtgcaaccagtgggtgggtagcgagagagagtgagtgacagaccagaaagccaaagcccttattggagtacacagcattatccaagcagggagtaactggttgctgggtttagagcaagcaggcatgatttcttgggagttaagttgtattgagaggtgttcactgctgcaaatctgca
s panTro5.chr6              29415631 628 + 175400573 tttcctctaatttggttttaacgtctctctttgaagagtggctagaaactctagcctggctctgatgggctccagtggag------gtggttgtggttgtggatgttttcggtgttcttttcatggaatacttccttatcctgatggagagctaatgcctaattgtcctatttatgaccaggtgtccctctcactggaaacttgttttcactggcagacaccattgtggcttttgtctgactactgtgtccagttcattcctaccaagattgccactctctaagggagccttgtccagaaaaaaaaattaatttcaggtgtgtc----aggtgagacgccaagaagacacat----------------------aaaaaaaaata-----gtataagtagttttattacttaaagattccagagagaagagggcaacttgcctcacaggcctaatgggagaaagggcatcccttagagacatgcatgtgcaaccagtgggtgggtagcgagagagagtgagtgacagaccagaaagccaaagcccttattggagtacacagcattatccaagcagggagtaactgattgctgggtttagagcaagcaggcatgatttcttgggagttaagttgtattgagaggtgttcactgctgcaaatctgca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29657366 626 + 173848474 tttcctctaatttggttttaacgtctctctttgaagagtggctagaaactctagcctggctctgatgggctccagtggag------gtggttgtggttgtggatgttttcggtgttcttttcatggaatacttccttatcctgatggagagctaatgcctaattgtcctacttatgaccaggtgtccctctcactggaaacttgttttcactggcagacaccattgtggcttttgtctgactactgtgtccagttcattcctaccaagattgccactctctaagggagccttgtccag-aaaaaaaattaatttcaggtgtgtc----aggtgagacgccaagaagacacat-----------------------aaaaaaaata-----gtataagtagttttattacttaaagattccagagagaagagggcaacttgcctcacaggcctaatgggagaaagggcatcccttagagacatgcatgtgcaaccagtgggtgggtagcgagagagagtgagtgacagaccagaaagccaaagcccttattggagtacacagcattatccaagcagggagtaactgattgctgggtttagagcaagcaggcatgatttcttgggagttaagttgtattgagaggtgttcactgctgcaaatctgca
i panPan2.chr6             I 4997 C 0
s gorGor5.CYUI01015250v1     5441991 631 +   6154872 tttcctctaatttggttttaacgtctctctttgaagagtggctagaaactctagcctggctctgatgggctccagtggag------gtggttgtggttgtggatgttttcggtgttcttttcatggaatacttccttatcctgatggagagctaatgcctaattgtcctatttatgaccaggtgtccctctcactggaaacttgttttcactggcagacaccattgtggcttttgtctgactagtgtgtccagttcattcctgccaagattgccactctctaagggagccttgtccag-aaaaaaaattaatttcaggtgtgtcagttaggtgagacaacaagaagacacat----------------------caaaaaaaata-----gtataagtagttttattacttaaagattccagagagaagagggcaacttgcctcacaggcctaatgggagaaagggcatcccttagagacatgcatgtgcaaccagtgagtgggtagcgagagagagtgagtgacagaccagaaagccaaagcccttattggagtacacagcattatccaagcagggagtaactgattgctgggtttagagcaagcaggcatgatttcttgggagttaagttgtattgagaggtgttcactgctgcaaatctgca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29603542 633 + 172585720 tttcctctaatttcgttttaatgtctctctttgaagagtggctagaaactctagcctgcctctgatgggctccagtggag------gtggttgtggttgtggatgttttcggtgttcttttcacggaatacttccttatcctgatggagagctaatgcctaattatcctatttatgaccaggtgtccctctcactgg-aacttgttttcactggcagacacacttgtggctcttgcctgacta--gtgtccagttcattcctaccaagatcaccactctctaagagagccttgtccggaaaaaattattaatttcaggtgtgtcagtcaggtgcaatgccaagaagacacgt------------------aaaaaaaaaaaaaag-----gtagaagtagttttattacttaaagattccagagagaagagggcaacttgcctcacaggcctaatgggagaaaggtcatcccttagagacacgcatgctcaaccagtgggtgggtagcaagagagagtgagtgacagccgagaaggccaaagcccttattggggtacacagcattacccaagcagagagtaactgattggtgggtttagagcaagcaggcccgagttcttgggagtcatgttgtattgagaggtgttcactgccacaaatctgcg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29264781 633 - 170955103 tttcctctaatttcgttttaatgtctctctttgaagagtggctagaaactctagcctgcctctgatgggctccagtggag------gtggttgtggttgtggatgttttcggtgttcttttcacggaatacttccttatcctgatggagagctaatgcctaattatcctatttatgaccaggtgtccctctcactgg-aacttgttttcactggcagacacacttgtggctcttgcctgacta--gtgtccagttcattcctaccaagatcaccactctctaagagagccttgtccggaaaaaattattaatttcaggtgtgtcagtcaggtgcaatgccaagaagacacgt------------------taaaaaaaaaaaaag-----gtagaagtagttttattacttaaagattccagagagaagagggcaacttgcctcacaggcctaatgggagaaaggtcatcccttagagacacgcatgctcaaccagtgggtgggtagcaagagagagtgagtgacagccgagaaggccaaagcccttattggggtacacagcattacccaagcagagagtaactgattggtgggtttagagcaagcaggcccgagttcttgggagtcatgttgtattgagaggtgttcactgccacaaatctgcg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2274816 632 -   2996164 tttcctctaatttcgttttaatgtctctctttgaagagtggctagaacctctagccttgctctgatgggctccagtggag------gtggttgtggttgtggatgttttcggtgttcttttcacggaatacttccttatcctgatggagagctaatgcctaattatcctatttatgaccaggtgtccctctcactgg-aacttgttttcactggcagacacacttgtggctcttgcctgacta--gtgtccagttcattcctaccaagatcaccactctctaagagagccttgtccggaaaaaattattaatttcaggtgtgtcagtcaggtgcaatgccaagaagacacg-------------------taaaaaaaaaaaaag-----gtagaagtagttttattacttaaagattccagagagaagagggcaacttgcctcacaggcctaatgggagaaaggtcatcccttagagacacgcatgctcaaccagtgggtgggtagcaagagagagtgagtgacagccgagaaggccaaagcccttattggggtacacagcattacccaagcagagattaactgattggtgggtttagagcaagcaggcccgagttcttgggagtcatgttgtattgagaggtgttcactgccacaaatctgcg
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28562383 637 -  71996105 TTtcctctaatttcgttttaatgtctctctttgaagagtggctagaaactctagcctgcctctcatgggctccagtggag------gtggttgtggttgtggatgtttttggtgttcttttcatggaatacttccttatcctgatggagagctaatgcctaattatcctatttatgaccaggtgttcctctcactgg-aacttgttttcactggcagacacacttgtggctcttgcctgacta--gtgtccagttcattcctaccaaaatcaccactttctaagagagccttgtccggaaaaaattattaatttcaggtgtgtcagtcaggtgcaatgccaagaagacacgt----------aaaaaaaaaaaaaaaaaaaaaag-----gtagaagtagttttattacttaaagattccagagagaagagggcaacttgcatcacaggcctaatgggagaaaggtcatcccttagagacacgcatgctcaaccagtgggtgggtagc----aagagtgagtgacagccgagaaggccaaagcccttattgggttacacagcattacccaagcagagagtaactgattggtgggtttagagcaagcaggcccgagttcctgggagtcatgttgtattgagaggtgttcactgccacaaatctgcg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2292468 647 +   2316924 tttcctctaattttgttttaatgtctctctttgaagagtggctagaaactctagcctgcctctgatgggctccagtggag------gtggttgtggttgtggatgttttcggtgttcttttcacggaatacttcctttccctgatggagagctaatgcctaattatcctacttatgaccaggtgtccctctcactgg-aacttgttttcactggcagacacacttgtggctcttgcctgtcta--gtgtccagttcattcctaccaatatcatcactccctaagagagccttgtccggaaaaaattattaatttcaggtgtgtcagtcaggtgcaacgccaagaagacacattaaacaaacaaaacaaaaaaaaaaaaaaaaaag-----ggagaagtagttttattacttaaaggttccagagagaagagggcaacttgcctcacaggcctaatgggagaaatgtcatcccttagagacacgcatgctcaaccagtgggtagcaaga----gagagtgagtgacagccaagaaggccaaagcctttacaggggtacacagcattacccaagcagggagtaactgattggtgggtttagagcaagcaggcacgacttcttgggagtcatgttgtattgagaggtgttcactgctgcaaatctgcg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2132100 644 -   3067355 tttcttctaattttgttttaatgtctctctttgaagagtggctagaaactctagcctgcctctgatgggctccagtggaggtggttgtggttgtggttgtggatgtttacagtgttcttttcatggaatacttccttatcctgatggagagctaatgcctaattatcctatttatgaccaggtgtccctctcactgg-aacttgtttccactggcagacacacttgtggctcttgcctgacta--gtgtccagttcattcctaccaacatcatcactctctaagagagccttgtccggaaaaaattattaatttcaggtgtgtcagtcaggtgcaacgccaagaagacacgt------------------taaaaaaaaaaaaggtaaaagtagaagtagttttattacttaaagattccagagagaagagggcaacttgcctcacaggcctaatgggagaaaggtcatcccttagagacacgcatgctcaaccagtgagtgggtagcaagagagagtgagtgacagccgagaaggccaaagcccttattggggtacacagcattacccaagcagggagtaactgattggtgggtttagagcaagcaggcacgagttcttgggagtcatgttgtattgagaggtgttcactgccacaaatctgca
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e cerAty1.NW_012001495v1     2144194 6263 -   2157725 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=690823.000000
s hg38.chr6_GL000254v2_alt    435259 143 +   4827813 gtccatgtggggtgtggggatcagtgggataagtcaagtaggttgtatctaggtgtcccacacggaggtggtaaccaagaggccaaatatctggattgaccacctgaagaaactg---ggagaggagaactcaaaattgtgataag
s panTro5.chr6              29416259 143 + 175400573 gtccatgtggggtgtggggatcagtgggataagtcaagtaggttgtatctaggtgtcccacacggaggtggtaaccaagaggccaaatatctggattgaccaccttgagaaactg---ggagaggagaactcaaaattgtgataag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29657992 143 + 173848474 gtccatgtggggtgtggggatcagtgggataagtcaagtaggttgtatctaggtgtcccacacggaggtggtaaccaagaggccaaatatctggattgaccaccttgagaaactg---ggagaggagaactcaaaattgtgataag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5442622 143 +   6154872 gtccatgtggggtgtggggatcagtgggataagtcaagtaggttgtatctaggtgtcccacatggaggtggtaaccaagaggccaaatatctggattgaccaccttgagaaactg---ggagaggagaactcaaaattgtgataag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29604175 146 + 172585720 gtctatgtggggtgtggggatcagtggggtaagtcaagcaggttttatctaggtgtcccatagggaggtggaaaccaagaggccaaatatctggattgaccaccttgagaaactgggaggagaggagaactcaaaattgtgataag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29265414 146 - 170955103 gtctatgtggggtgtggggatcagtggggtaagtcaagcaggttttatctaggtgtcccatagggaggtggaaaccaagaggccaaatatctggattgaccaccttgagaaactgggaggagaggagaactcaaaattgtgataag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2275448 146 -   2996164 gtctatgtggggtgtggggatcagtggggtaagtcaagcaggttttatctaggtgtcccatagggaggtggaaaccaagaggccaaatatctggattgaccaccttgagaaactgggaggagaggagaactcaaaattgtgataag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2150457 146 -   2157725 gtccatgtggggtgtggggatcagtggggtaagtcaagcaggttgtatccaggtgtcccatagggaggtggaaaccaagaggccaaatatctggattgaccaccttgagaaactgggaggagaggagaagtcgaaattgtgataag
i cerAty1.NW_012001495v1   I 6263 C 0
s chlSab2.chr17             28563020 146 -  71996105 gtccatgtggggtgtggggatcagtggggtaagtcaagcaggttttatctaggtgtcccatagggaggtggaaaccaagaggccaaatatctggattgaccaccttgagaaactgggaggagaggagaactcaaaattgtgataag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2293115 146 +   2316924 gtccatgtggggtgtggggatcagtggggtaagtcaagcaggttgtatccaggtgtcccatagggaggtggaaaccaagaggccaaatatctggattgaccaccttgagaaactgggaggagaggagaagtcgaaattgtgataag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2132744 146 -   3067355 gtccatgtggggtgtggggatcagtggggtaagtcaagcagattgtatccaggtgtcccatagggaggtagaaaccaaggggccaaatatctggattgaccacgttgagaaactgggaggagaggagaactcgaaattgtgataag
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e calJac3.chr4             171588782 5266 - 171630274 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=466079.000000
s hg38.chr6_GL000254v2_alt    435402 87 +   4827813 ggtgactaagtcctgcttctggcatgaggaagttcaattatatattgaaaatgaacgctgaggtaacctaaactcataagaattcac
s panTro5.chr6              29416402 87 + 175400573 ggtgactaagtcctgcttctggtatgaggaagttcaattatatattgaaaatgaatgctgaggtaacataaattcataagaattcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29658135 87 + 173848474 ggtgactaagtcctgcttctggtatgaggaagttcaattatatattgaaaatgaatgctgaggtaacataaattcataagaattcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5442765 87 +   6154872 ggtgactaagtcctgcttctggtatgaggaagttcaactatatattgaaaatgaatgctgaggtaacataaactcataagaattcac
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29604321 87 + 172585720 ggtggctaagccctgtttctggtatgagaaatttcaactatagattgaaaatgaatgctgaggcaacataaaatcataagaattcac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29265560 87 - 170955103 ggtggctaagccctgtttctggtatgagaaatttcaactatagattgaaaatgaaggctgaggcaacataaaatcataagaattcac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2275594 87 -   2996164 ggtggctaagccctgtttctggtatgagaaatttcaactatagattgaaaatgaacgctgaggcaacataaaatcataagaattcac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2150603 87 -   2157725 ggtgactaagccatgcttctggtatgagaaatttcaactatagattgaaaatgaacgctgaggcaacataaaatcataagaattcac
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28563166 87 -  71996105 ggtgactaagccctgcttctggtatgagaaatttcaactatatattgaaaatgaatgctgaggcaatataaaatcataagaattcac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2293261 87 +   2316924 ggtgactaagccatgcttctggtatgagaaatttcaactatagattgaaaacgaacgctgaggcaacataaaatcataagaattcac
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2132890 87 -   3067355 ggtgactaagccccacttctggtatgaaaaatttcaactatacattgaaaatgaacgctgaggcaacataaaatcataagaattcac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171583516 86 - 171630274 ggtgactaagccctgcttctgatatgagaaagtttaact-tatattgaaaatgaatgctgaggcaacataaaatcataagaattcac
i calJac3.chr4             T 5266 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1737966 41203 -   2232465 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=2819489.000000
s hg38.chr6_GL000254v2_alt    435489 540 +   4827813 tacagata--tctgcactaccatgttcattgtagcatttttcacaatagctgaggtatgaaagg-aacctaaatgtccatcaacggataaacagataaatatataaaagggatataatgtg------atatat--atgaaccacattatctatataaaatggaatactattcagccttaaagaaaaaaggg-aaattctgtc-tttacaacaacattcatgaacctgcaggacattatgcgaagtgaaagaagccagacacagaaggacaaataccacatgatctcactcttatgtggaatc---taaaaaagataa-----actcatacaagtggagagtagaatga-tagctacct-ggggggcaggggatggagaaaggggggattttaaacaagtaga-tttaaatgttctcactataagaaaaataagtatgtgaggtgatgactgtgttagctggacttaatcattccatattgcac--------------atata--------c----a------------------tata--------tcaaaagatcacattgtacctaatcaatatataaaattatt---tgtcaattaaaat-----aataaaaGATT-GGAGT
s panTro5.chr6              29416489 543 + 175400573 tacagata--tctgcactaccatgttcattgtagcatttttcacaatagctgaggtatggaagg-aacctaaatgtccatcaatggataaacagataaatatataaaagggatataatgtg------atatat--atgaaccacattatctatataaaatggaatactattcagccttaaagaaaaaaggg-aaattctgtc-tttacaacaacattcatgaacctgcaggacattatgcgaagtgaaagaagccagacacagaaggacaaataccacatgatctcactcatatgtggaatc---taaaaaagataa-----actcatacaagtggagagtagaatga-cagctacct-ggggggcaggggatggagaaaggggggattttaaacaagtaga-cttaaatgttctcactataagaaaaataagtatgtgaggtgatgactgtgttagctggacttaatcattccatattgcac--------------atata--------c----a------------------tata--------tcaaaagatcacattgtacctaatcaatatataaaattattatttgtcaattaaaat-----aataaaaGATT-GGAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29658222 543 + 173848474 tacagata--tctgcactaccatgttcattgtagcatttttcacaatagctgaggtatggaagg-aacctaaatgtccatcaatggataaacagataaatatataaaagggatataatgtg------atatat--atgaaccacattatctatataaaatggaatactattcagccttaaagaaaaaaggg-aaattctgtc-tttacaacaacattcatgaacctgcaggacattatgcgaagtgaaagaagccagacacagaaggacaaataccacatgatctcactcatatgtggaatc---taaaaaagataa-----actcatacaagtggagagtagaagga-cagctacct-ggggggcaggggatggagaaaGGGGGGATTTTAAACAagtaga-tttaaatgttctcactataagaaaaataagtatgtgaggtgatgactgtgttagctggacttaatcattccatattgcac--------------atata--------c----a------------------tata--------tcaaaagatcacattgtacctaatcaatatataaaattattatttgtcaattaaaat-----aataaaaGATT-GGAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5442852 543 +   6154872 tacagata--tctgcactaccatgttcattgtagcatttttcacaatagctgaggtatggaagg-aacctaaatgtccatcaatggataaacagataaatatataaaagggatataatgtg------atatat--atgaaccacattatctatataaaatggaatactattcagccttaaagaaaaaaagg-aaattctgtc-tttacaacgacattcatgaacctgcaggacattatgcgaagtgaaagaagccagacacagaaggacaaataccacatgatctcactcatatgtggaatc---taaaaaagataa-----actcatacaagtggagagtagaatga-tagctacct-ggggggcaggggatggagaaaggggggattttaaacaagtaga-tttaaatgttctcactataagaaaaataagtatgtgaggtgatgactgtgttagctggacttaatcattccatattgcac--------------atata--------c----a------------------tata--------tcaaaagatcacattgtacctaatcaatatataaaattattatttgtcaattaaaat-----aataaaaGATC-GGAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29604408 567 + 172585720 tacagata--tttgcactgtcatgttcactatagcatttttcacaatagctgagatgtggaagg-accttaaatgtccatcaatggataaacagataaatatataaaagggatataatgcgatatatatatat--atgtaccacagtatctatataaaatggaatactattccgccttaaag-aaaaaggg-aaattctgtc-tttacaacaacattcatgaacctgcaggacattatacaaagtgaaagaagccagacaca-aaagacaaataccacatgatctcactcatatgtggaatc---taaaaaagttaa-----actcatacaggtacagaatagaatga-tagctacctaggggggcaggggatggagaaaggggggattttaaacaagtagattttagatgttctcactataagaaaaataa----gtgaggtgatgactgtgttaactggacttaatcattccatattgtac--------acacacacaca--------c----acacacacacacacata--tatc--------tcaacagatcacattgtacctaataaatatataaaattgttatttgtcaattaaaat-----aataaaaGACT-GGAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29265647 569 - 170955103 tacagata--tttgcactgtcatgttcattgtagcatttttcacaatagctgagatgtggaagg-accttaaatgtccatcaatggataaacagataaatatataaaagggatataatgcgacatatatatat--atgtaccacagtatctatataaaatggaatactattcagccttaaag-aaaaaggg-aaattctgtc-tttacaacaacattcatgaacctgcaggacattatacgaagtgaaagaagccagacaca-aaagacaaataccacatgatctcactcatatgtggaatc---taaaaaagttaa-----actcatacaggtacagaatagaatga-tagctacctaggggggcaggggatggagaaaggggggattttAAACAagtagagtttaaatgttctcactataagaaaaataa----gtgaggtgatgactgtgttaactggacttaatcattccatattgtac--------acacacacaca--------c----acacacacacacacacacgtatc--------tcaacggatcacattgtacctaataaatatataaaattgttatttgtcaattaaaat-----aataaaaGACT-GGAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2275681 567 -   2996164 tacagata--tttgcactgtcatgttcattgtagcatttttcacaatagctgagatgtggaagg-actttaaatgtccatcaatggataaacagataaatatataaaagggatataatgcg--atatatatat--atgtaccacagtatctatataaaatggaatactattcagccttaaag-aaaaaggg-aaattctgtc-tttacaacaacattcatgaacctgcaggacattatacgaagtgaaagaagccagacaca-aaagacaaataccacatgatctcactcatatgtggaatc---taaaaaagttaa-----actcatacaggtacagaatagaatga-tagctacctaggggtgcaggggatggagaaaggggggattttaaacaagtagattttaaatgttctcactataagaaaaataa----gtgaggtgatgactgtgttaactggacttaatcattccatattgtac--------acacacacaca--------c----acacacacacacacatatatatc--------tcaacagatcacattgtacctaataaatatataaaattgttatttgtcaattaaaat-----aataaaaGACT-GGAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2150690 574 -   2157725 tacagata--tttgcactatcatgttcattgtagcatttttcacaatagctgagatatggaagg-accttaaatgtctatcaatggataaacagataaatatataaaagggatataatgcg--atatatatat--atgtaccacagtatctatataaaatggaatactattcaaccttaaag-aaaaaggg-aaattctgtc-tttacagcaacattcatgaacctacaggacattatgcgaagtgaaagaagccaggcacataaagacaattaccacatgatctcactcatatgtggaatc---taaaaaagttaa-----actcatacaggtggagagtagaatga-tagctacct-ggggggcaggggagggagaaaggggggattttaaacaagtagattttaaatgttctcactataagaaaaataa----gtgaggtgatgactgtgttaactggacttaatcattccata-tgtac--------acacacacacacgcgtgtgc----acacacacacacacatatatata--------tcaacagatcacattgtacctaataaatatataaaattgttatttgtaaattaaaat-----aataaaaGACT-GGAGT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28563253 562 -  71996105 tacagata--tttgcactatcatgttcattgtagcatttttcacaatagctgagatatggaagg-accttaaatgtccatcaatggataaacaggtaaatatataaaagggatataatgtg--atatatatatacatgtaccatagtatctatataaaatggaatactattcagcctt-------aaaggg-aaattctgtc-ttcacaacaacattcatgaacctgcaggacattatacgaagtgaaagaagccaggcacagaaagacaaataccacatgatctcactcatatgtggaatc---taaaaaagttaa-----actcatacaggtgcagagtagaatga-tagctacct-ggggggcaggggatggagaaa-ggggGATTTTAAAcaagtagattttaaatattctcactataagaaaaataa----gtaaggtgatgactgtgttaattggacttaatcattccatattgtac--------acgcacacaca--------c----acgcgcacacacacacatatata--------tcaacagatcacattgtacctaataaatatataaaattgttatttgtcaattaaaat-----aataaaagact-GGAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2293348 579 +   2316924 tacagata--tttgcactatcatgttcattgtagcatttttcacaatagctgagatatggaagg-accttaaatgtccatcaatggataaacagataaatatataaaagggatataatgcg--atatatatat--atgtaccacagtatctatataaaatggaatactattcagccttaaag-aaaaaggg-aaattctgtc-tttacaacaacattcatgaacctacaggacattatgtgaagtgaaagaagccaggcacagaaagacaaataccacatgatctcactcatatgtggaatc---taaaaaagttaa-----actcatacaggtggagagtagaatga-tagctacct-ggggggcaggggatggagaaaggggggattttaaacaagtagattttaaatgttctcactataagaaaaataa----gtgaggtgatgactgtgttaactggacttaatcattccatattgtac--------acacacacaca--------cgcatgcgcgcacacacacacacacatatatctctctcaacagatcacattatacctaataaatatataaaattgttatttgtcaattaaaat-----aataaaaGACT-GGAGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2132977 575 -   3067355 tacagata--tttgcactatcatgttcattgtagcatttttcacaatagctgagatatggaagg-atcttaaatgtccatcaatggataaacaggtaaatatataaaagggatataatgcg----atatatat--atgtaccacagtatctatataaaatgaaatactattcagccttaaag-aaaaagggaaaattctgtc-tttacaacaacattcatgaacctgcaggacattatgcgaagtgaaagaagccagacacagaaagacaaataccacatgatctcactcatatatggaatc---taaaaaagttaa-----actcatacaggtggagagtagaatgagtagctacct-gaggggcaggggatggagaaaggcgggatcttaaacaagtagattttaaatgttctcactacaagaaaaataa----gtgaggtgatgactgtgttaactggacttaatcattccatattgtacgtatatatatacacacaca--------c----atatatatacacacatatatata--------tcaacagatcacattgtacctaataaacatataaaattgttatttgtcaattaaaat-----aataaaaGACT-GGAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171583602 547 - 171630274 tacagatatctctgcactaccatgcttattgtagcatcattcacaatagctgagatatggaagg-aaattaaatgtccatccattaatgaacaaatgaatataagaaagtgatattatgtg------agatat--atgtatcacacgatctatataaaatggaatgctattcagccttaaag-aaagaagg-aaattctgtc-tttataacaacattcactaatctggaggacatcatgctgagtgaaagaagctaggcacagaaatgcaaataccacatgatctcactcacacgtgaaatc---taaaaacgttta-----ggtcatacaagtggagagtagaatgg-tggctacct-ggggggcagtggatggggaaaggggaaattttaaagaagtagattttaaatgttctcactataagaaaattaagtatgtaagatgatgaccgtgttaactggacttaatcatttcatattgtac----------------ata--------a-----------------------tata--------ccaaaatatcacattgtatctaataaatatatagaattattatttttcaattaaaataaaaCaataaaatatt-agaat
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1696763 466 -   2232465 taaggaca--ttgagactagattatttatcacagctcaatttacaattgccaagatgtggaaaacaacccaagtgcctatcaacccatgaatggattaata----------ataaactgtg------gtttat------------------gtatagcatggaatactggtagaccata----aaatggag-actttacatcttttgtattaatctggatagagttggagaacattctctttagtaaagtatcacaaaaatggaaaagcaagtatccaatgtactcaatactaatttgaagccagtagatgaagtaatgcatgctcacaca-----agagaaaaactt-gatttaatt-aacgttgagggggagggggaagggAGA-----------------TTGGTGTGCTTCTACCTAAAGGGCATGAT----ATAAGGGTATA-------TGGCAGG------------CCTGCTGGGG--------GCA---GGACA--------C----A-------------------ACT--------ACAACGGGG---ATCTTACCTAACAAATGCA-AACACTG------------TAACCT-----AATCGGATCCTCATATT
i otoGar3.GL873742         T 41203 C 0
e dasNov3.JH570037            328224 34343 -    859332 T
e canFam3.chr35             26138168 1234 +  26524999 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1249485.000000
s hg38.chr6_GL000254v2_alt    436029 216 +   4827813 AATATTTAAGATTTTTTTAACATTTTGCAGGAAAAATCTTGGAATTGAATTTAAAAGACAACTGGGAAGGCATAAATAATATAGGTCAG----------T-CTCAAAGAGCCCCTCATTAATAAGGAACAGATATGCAG------TTTAGTCTTTATGTATTCTAG------TTTTTCAGTTGAATGACTCTCAAATCTCTCC--TTTTTTT--ccagttgtcttgtacatttgagccttagc
s panTro5.chr6              29417032 216 + 175400573 AATATTTAAGATTTTTTTAACATTTTGCAGGAAAAATCTTGGAATTGAATTTAAAAGACAACTGGGAAGGCATAAATAATATAGGTCAG----------T-CTCAAAGAGCCCCTCATTAATAAGGAACAGATATGCAG------TTTAGTCTTTATGTATTCTGG------TTTTTCTGTTGAATGACTCTCAAATCTCTCC--TTTTTTT--ccagttgtcttgtacatttgagccttagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29658765 216 + 173848474 AATATTTAAGATTTTTTTAACATTTTGCAGGAAAAATCTTGGAATTGAATTTAAAAGACAACTGGGAAGGCATAAATAATATAGGTCAG----------T-CTCAAAGAGCCCCTCATTAATAAGGAACAGATATGCAG------TTTAGTCTTTATGTATTCTGG------TTTTTCTGTTGAATGACTCTCAAATCTCTCC--TTTTTTT--ccagttgtcttgtacatttgagccttagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5443395 216 +   6154872 AATATTTAAGATTTTTTTAACATTTTGCAGGAAAAATCTTGGAATTGAATTTAAAAGACAACTGGGAAGGCATAAATAATATAGGTCAG----------T-CTCAAagagcccctcattaataaggaacagatatgcag------tttagtctttatgtattctag------tttttctgttgaatgactctcaaatctctcc--ttttttt--ccagttgtcttgtacatttgagccttagc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29604975 208 + 172585720 AATATTTAAGATTTTTTTCACCTGTTGCAGGAAAAATCTTGGAATTGAATTTAAAAGACAACTGGGAAGGCATAAATAATATAGGTCAG----------T-CTCAAAGAGCACCTCATTAATAAGGAA--------CAG------TTTAGTCTTTATGTATTttag------tttttctgttgaatggctctcaggtctctcc--ttttttt--ccagttgtcttgtaaatttgacccttagc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29266216 208 - 170955103 AATATTTAAGATTTTTTTCACCTGTTGCAGGAAAAATCTTGGAATTGAATTTAAAAGACAACTGGGAAGGCATAAATAATATAGGTCAG----------T-CTCAAAGAGCACCTCATTAATAAGGAA--------CAG------TTTAGTCTTTATGTATTTTAG------TTTTTCTGTTGAATGGCTCTCAAGTCTCTCC--TTTTTTT--CCAGTTGTCTTGTAAATTTGACCCTTAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2276248 208 -   2996164 AATATTTAAGATTTTTTTCACCTGTTGCAGGAAAAATCTTGGAATTGAATTTAAAAGACAACTGGGAAGGCATAAATAATATAGGTCAG----------T-CTCAAagagcacctcattaataaggaa--------cag------tttggtctttatgtattttag------tttttctgttgaatggctctcaagtctctcc--ttttttt--ccagttgtcttgtaaatttgacccttagc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2151264 208 -   2157725 AATATTTAAGATTTTTTTCACCTGTTGCAGGAAAAATCTTGGAATTGAATTTAAAAAACAACTGGGAAGGCATAAATAATATAGGTCAG----------T-CTCAAAGAGCACCTCATTAATAAGGAA--------CAG------TTTAGTCTTTATGTATTttag------tttttctgttgaatggctctcaagtttctcc--ttttttt--ccagttgtcttgtaaatttgacccttagc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28563815 208 -  71996105 AATGTTTAAGATTTTTTTCACCTGTTGTAGGAAAAATCTTGGAATTGAATTTAAAAGACAACTCGGAAGGCATAAATAATATAGGTCAG----------T-CTCAAAGAGCACCTCATTAATAAGGAA--------CAG------TTTAGTCTTTATGTATTTTAG------TTTTTCTGTTGAATGGCTCTCAAGTCTCTCC--TTTTTTT--CCAGTTGTCTTGTAAATTTGACCCTTAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2293927 208 +   2316924 AATATTTAAGATTTTTTTCACCTGTTGCAGGAAAAATCTTGGAATTGAATTTAAAAGACAACTGGGAAGGCATAAATAATATAGGTCAG----------T-CTCAAagagcacctcattaataaggaa--------gag------tttagtctttatgtattttag------tttttctgttgaatggctctcaagtctctcc--ttttttt--ccagttgtcttgtaaatttgacccttagc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2133552 210 -   3067355 AATATTTAAGATTTTTTTCACCTGTTGCAGGAAAAATCTTGGAATTGAATTTAAAAGACAACTGGGAAGGCATAAGTAATATAGGTCAG----------T-CTCAAACAGCACCTCATTAATAAGGAA--------CAG------TTTAGTCTTTATGTATTttag------tttttctgttgaatggctctcaagtctctccttttttttt--ccagttgtcttgtaaatttgacccttagc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171584149 217 - 171630274 aatatttaata-ttttttaatCTTTTGCCAGAAAAATGTTGGAATTGATTTTAAAAGTCAACTGGGAAGGCATAAATAATACAGGTCAA----------T-CTCAAAGAGTACCTCATTAATAAGGAAAAGATACATAGTTTAGTTTTAGTCTTTATGTATTCTA---------TTTCTTTTGAATGGCAATCAA-TCGCTCC--TTTTTTT--CCAGTTGTCTTGTAAATTTGACCCTTAGC
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1697229 176 -   2232465 AATA-----------------------------------------TGAAATTAAAAAAAAA----GAAAGCATAAAAGGTATAGAATATCTAAAGCACCT-TTCAAAGAGGACCCTGTTGATAAGGAAAAGACA--TGT------TTTAGTCTT----TATTTCAG------TTTTTCTGTTGACTGGGTCTCAAACCTCTCC--TACTTTTGACCCATTGCTTTGTAAATTTGG-CCTTAGC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            293881 223 -    859332 AGTATCAAAGTTCTGAGTGAACTTTTACAGGGATAAATTTAGAATTTAATTTAAAGTCCAAGCAGGAAGCCACAAATGGTGCAGGAAAG----------TACTCAAAGAATGCAATGTTAATAAGGAA-AAACAAGCA-------TTTAGTCTTCATATGCTCCATCTTTTCTTTTTCTTCTACATGACTCCTAAACTTCCCC--TATTTGTAACCAGAGTTCTTAAAATTTTAGGCCTTAat
i dasNov3.JH570037         T 34343 I 43
e canFam3.chr35             26138168 1234 +  26524999 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=116281.000000
s hg38.chr6_GL000254v2_alt    436245 25 +   4827813 cccacgggaaactgaaaaaaaaaat
s panTro5.chr6              29417248 25 + 175400573 cccacgggaaactgaaaaaaaaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29658981 25 + 173848474 cccacgggaaactgaaaaaaaaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5443611 25 +   6154872 cccatgggaaactgaaaaaaaaaat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29605183 21 + 172585720 cccataggaaactg----aaaaaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29266424 21 - 170955103 CCCATAGGAAACTG----AAAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2276456 21 -   2996164 cccataggaaactg----aaaaaat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2151472 21 -   2157725 cccataggaaactg----aaaaaat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28564023 21 -  71996105 CCCATGGGAAACTG----AAAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2294135 21 +   2316924 cccataggaaactg----aaaaaat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2133762 21 -   3067355 cccatgggaaactg----aaaaaat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171584366 23 - 171630274 CCCATGGGAAACTG--AAAAAATAT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1697405 24 -   2232465 CCCATGAGAAACTG-GGGTAAAAAT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            294104 43 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=717274.000000
s hg38.chr6_GL000254v2_alt    436270 113 +   4827813 cggacggctcagtaaaacctcttcctttcattgtaaatgttactcacagcaTCTTTTCCCATGTTTGTTGG----------------T-GACAAATTCAC-----TGTCATCTCAGTAAGAGTATAACATCATGC
s panTro5.chr6              29417273 113 + 175400573 cggacggctcagtaaaacctcttccttccgttgtaaatgttactcacagcaTCTTTTCCCATGTTTGTTGG----------------T-GATAAATTCAC-----TGTCATCTCAGTAAGAGTATAACATCATGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29659006 113 + 173848474 cggacggctcagtaaaacctcttcctttcgttgtaaatgttactcacagcaTCTTTTCCCATGTTTGTTGG----------------T-GATAAATTCAC-----TGTCATCTCAGTAAGAGTATAACATCATGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5443636 113 +   6154872 tggacggctcagtaaaacctgttcctttcattgtaaatgtaattcacagcaTCTTTTCCCATGTTTGTTGG----------------T-GATAAATTCAC-----TGTCATCTCAGTAAGAGTATAACATCATGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29605204 113 + 172585720 cagacagctcagtcaaacctgttcctttcgttgtaaatgtaactcacagcaTCTTTTCCCATGTTTGTTGG----------------T-GATAAATTCAC-----TGTCATCTCAGTAAGACTATAACATCATGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29266445 113 - 170955103 CAGACAGCTCAGTCAAACCTGTTCCTTTCGTTGTAAATGTAACTCACAGCATCTTTTCCCATGTTTGTTGG----------------T-GATAAATTCAC-----TGTCATCTCAGTAAGACTATAACATCATGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2276477 113 -   2996164 cagacagctcagtcaaacctgttcctttcgttgtaaatgtaactcacagcaTCTTTTCCCATGTTTGTTGG----------------T-GATAAATTCAC-----TGTCATCTCAGTAAGACTATAACATCATGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2151493 113 -   2157725 cagacagctcagtaaaacctgttcctttcgttgtaaatgtaactcacagcaTCTTTTCCCATGTTTGTTGG----------------T-GATAAATTCAC-----TGTCATCTCAGTAAGACTATAACATCATGC
i cerAty1.NW_012001495v1   C 0 M 3200
s chlSab2.chr17             28564044 113 -  71996105 CAGACAGCTCAGTAAAACCTGTTCCTTTCGTTGTAAATGTAACTCACAGCATCTTTTCCCATGTTTGTTGG----------------T-GATAAATTCAC-----TATCATCTCAGTAAGACTATAACATCATGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2294156 113 +   2316924 cagacagctcagtcaaacctgttcctttcgttgtaaatgtaactcacagcaTCTTTTCCCATGTTTGTTGG----------------T-GATAAATTCAC-----TGTCATCTCAGTAAGACTATAACATCATGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2133783 113 -   3067355 cagacggctcagtaaaacctgttcctttcgttgtaaatgtaactcacagcaTCTTTTCCCATGTTTGTTGG----------------T-GATAAATTCAC-----TGTCATCTCAGTAAGACTATAACATCATGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171584389 118 - 171630274 CAGACGGCTCAGTAAAATTTATTCCCTTTATTTTAAATATAACTCACAGAATCTTTTCCCATGTTTGTTGA----------------T-GATAAATTTACTGTCATGTCATCTCAGTAGGACTATAACGTCATGC
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1697429 120 -   2232465 CACATGAGTCAGTAGAATCCATTCCCTTTACTGTAAATAT--CTCACAGTGCCATTTC-----TGTGTTGGAAAAGATAAATTCACCA-GATAAATTCAT-----TTTCAGCTCATTAAGACTACAA--TCATGC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            294147 112 -    859332 tgACTCACTCAATATAATCCATCCCCATCATTTTTGATTCAACTCAAAGCACCATTTTCCAGGTTAGTTTG----------------TGGATAAACTCAC-----TGTGATCTCTGT--GCATTCAACACCATGC
i dasNov3.JH570037         I 43 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=2958098.000000
s hg38.chr6_GL000254v2_alt    436383 503 +   4827813 TGAAGATATTTCTGTGAAGAGTTTTGTACTGAGAACATCA---------TACCA-GGACAACTCCTTGAAGGGCATTAA-TTGCAGCTTTGGGATTTATACTCCCAAAGGCTGCAGTCAATGAAAGAGTATCCCGTTATTCTTTTTGTTTCCATAAAGATTACATTTGCTCTGGGATAAAGGGTCCATCCCGTGATACCTTGAATGCCCTAAAGTATTCCCACATTCTGCTAAAAAGCAGATCTTTTGGACAAACTCAGGCTCTCTTTTCTGTAGCAATGACAATCACAGTTATTTCCAGACTCTGTTCTTCATAGTTAGATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTAGGTTGATGTTTTTAGGTTGTATGGCAACCAGAGAGCCCCTTCATCAGTTTATACCTGATGAGGTTGTAGGCCAGGTAGAGAG---TGACAGGGAACAGGGACAAACACAGGAAGGTCAGTACTGAAAGAAGTTGGT---GCA--CTTCTTAAG----GGGTAGACAG
s panTro5.chr6              29417386 503 + 175400573 TGAAGATATTTCTGTGAAGAGTTTTGTACTGAGAACATCA---------TACCA-GGACAACTCCTTGAAGGGCATTAA-TTGCAGCTTTGGGATTTATACTCCCAAAGGCTGCAGTCAATGAAAGAGTATCCCATTATTCTTTTTGTTTCCATAAAGATTACATTTGCTCTGGGATAAAGGGTCCATCCCGTGATACCTTGAATGCCCTAAAGTATTCCCACATTCTGCTAAAAAGCAGATCTTTTGGACAAACTCAGGCTCTCTTTTCTGTAGCAATGACAATCACAGTTATTTCCAGACTCTGTTCTTCATAGTTAGATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTAGGTTGATGTTTTTAGGTTGTATGGCAACCAGAGAGCCCCTTCATCAGTTTATACCTGATGAGGTCGTAGGCCAGGTAGAGAG---TGACAGGGAACAGGGACAAACACAGGAAGGTCAGTACTGAAAGAAGTTGGT---GCA--CTTCTTAAG----GGGTAGACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29659119 503 + 173848474 TGAAGATATTTCTGTGAAGAGTTTTGTACTGAGAACATCA---------TACCA-GGACAACTCCTTGAAGGGCATTAA-TTGCAGCTTTGGGATTTATACTCCCAAAGGCTGCAGTCAATGAAAGAGTATCCCATTATTCTTTTTGTTTCCATAAAGATTACATTTGCTCTGGGATAAAGGGTCCATCCCGTGATACCTTGAATGCCCTAAAGTATTCCCACATTCTGCTAAAAAGCAGATCTTTTGGACAAACTCAGGCTCTCTTTTCTGTAGCAATGACAATCGCAGTTATTTCCAGACTCTGTTCTCCATAGTTAGATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTAGGTTGATGTTTTTAGGTTGTATGGCAACCAGAGAGCCACTTCATCAGTTTATACCTGATGAGGTCGTAGGCCAGGTAGAGAG---TGACAGGGAACAGGGACAAACACAGGAAGGTCAGTACTGAAAGAAGTTGGT---GCA--CTTCTTAAG----GGGTAGACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5443749 503 +   6154872 TGAAGATATTTCTGTGAAGAGTTTTGTACTAAGAACATCA---------TACCA-GGACAACTCCTTGAAGGGCATTAA-TTGCAGCTTTGGGATTTATACTCCCAAAGGCTGCAGTCAATGAAAGAGTTTCCCATTATTCTTTTTGTTTCCATAAAGATTACATTTGCTCTGGGATAAAGGGTCCATCCCGTGATACCTTGAATGCCCTAAAGTATTCCCACATTCTGCTAAAAAGCAGATCTTTTGGACAAACTCAGGCTCTCTTTTCTGTAGCAATGACAATCACAGTTATTTCCAGACTCTGTTCTTCATAGTTAGATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTAGCTTGATGTTTTTAGTTTGTATGGCAACCAGAGAGCCCCTTCATCAGTTTATACATGATGAGGTCGTAGGCCAGGTAGAGAG---TGACAGGGAACAGGGACAAACACAGGAAGGTCAGTACTGAAAGAAGTTGGT---GCA--CTTCTTAAG----GGGTAGACAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29605317 503 + 172585720 TGAAGATATTTCTGTGAAGAGTTTTGTACTCAGAACATCA---------CATCA-GGACAACTCCTTGAAGGGCATTAA-TTGCAGCTTTGGGATTTATACTCCCAAAGGCCCCAATCAGTGAAAGAGTATCCCATTATTCTTTTTGTTTCCATAAAGATTGCATTTGCTCTGGGATAAAGGGTCCATCCCGTGATACCTTGAATGCCCTAAAGTATTCCCACATTCTGCTAAAAAGCAGATCTTTTGGACAAACTCAGGCTGTCTTTTCTGTAGCAATGACAATCACAGTTATTTCCAGACTCTGTTGTCCATAGTTAGATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTAGGTTGATGTTTTTAGGTTGTACAGCAACCAGAGAGCCCCTTCGTCAGTTTATACATGATGAGGTCATAGGTCAGGAGGAGAG---TGACAGGAAACAGGGACAAGCACAGGAAGGTCAGTACTGAAAGAAGTTGGT---GCA--CTTCTTAAG----GGGTAGACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29266558 503 - 170955103 TGAAGATATTTCTGTGAAGAGTTTTGTACTGAGAACATCA---------CATCA-GGACAACTCCTTGAAGGGCATTAA-TTGCAGCTTTGGGATTTATACTCCCAAAGGCCCCAATCAGTGAAAGAGTATCCCATTATTCTTTTTGTTTCCATAAAGATTGCATTTGCTCTGGGATAAAGGGTCCATCCCGTGATACCTTGAATGCCCTAAAGTATTCCCACATTCTGCTAAAAAGCAGATCTTTTGGAGAAACTCAGGCTGTCTTTTCTGTAGCAATGACAATCACAGTTATTTCCAGACTCTGTTGTCCATAGTTAGATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTAGGTTGATGTTTTTAGGTTGTACAGCAACCAGAGAGCCCCTTCGTCAGTTTATACATGATGAGGTCATAGGTCAGGAGGAGAG---TGACAGGAAACAGGGACAAGCACAGGAAGGTCAGTACTGAAAGAAGTTGGT---GCA--CTTCTTAAG----GGGTAGACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2276590 503 -   2996164 TGAAGATATTTCTGTGAAGAGTTTTGTACTGAGAACATCA---------CATCA-GGACAACTCCTTGAAGGGCATTAA-TTGCAGCTTTGGGATTTATACTCCCAAAGGCCCCAATCAGTGAAAGACTATCCCATTATTCTTTTTGTTTCCATAAAGATTGCATTTGCTCTGGGATAAAGGGTCCATCCCGTGATACCTTGAATGCCCTAAAGTATTCCCACATTCTGCTAAAAAGCAGATCTTTTGGAGAAACTCAGGCTGTCTTTTCTGTAGCAATGACAATCACAGTTATTTCCAGACTCTGTTGTCCATAGTTAGATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTAGGTTGATGTTTTTAGGTTGTACAGCAACCAGAGAGCCCCTCCGTCAGTTTATACATGATGAGGTCATAGGTCAGGAGGAGAG---TGACAGGAAACAGGGACAAGCACAGGAAGGTCAGTACTGAAAGAAGTTGGT---GCA--CTTCTTAAG----GGGTAGACAG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28564157 503 -  71996105 TGAAGATATTTCTGTGAAGAGTTTTGTACTGAGAACATCA---------CACCA-GGACAACTCCTTGAAGGGCATTAA-TTGCAGCTTTGGGATTTGTACTCCCAAAGGCCCCAATTAACGAAAGAGTATCCCATTATTCTTTTTGTTTCCATAAAGATTGCATTTACTCTGGGATAAAGGGTCCATCCCCTGATGCCTTGAATGCCCTAAAATATTCCCACATTCTGCTAAAAAGCAGATCTTTTGAACAAACTCAGGCTGTCTTTTCCGTAGCAATGACAATCACAGTTATTTCCAGACTCTGTTCTTCATAGTTAGATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTAGGTTGATGTTTTTAGGTTGTACGGCAACCAGAGCGCCCCTTCGTCAGTTTATACATGATGAGGTCATAGGTCAGGAGGAGag---tgacagggaacagggacaagcacaggaaggTCAGTACTGAAAGAAGTTGGT---GCA--CTTCTTAAG----GGGTAGACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2294269 503 +   2316924 TGAAGATATTTCTGTGAAGAGTTTTGTACTGAGAACATCA---------CACCA-GGACAACTCCTTGAAGGGCATTAA-TTGCAGCTTTGGGATTTATACTCCCAAAGACCCCAATCAGTGAAAGAGTATCCCATTATTCTTTTTGTTTCCATAAAGATTGCATTTGCTCTGGGATAAAGGGTCCATCCCGTGATACCTTGAATGCCCTAAAGTATTCCCACATTCTGCTAAAAAGCAGATCTTTTGGAGAAACTCAGGCTGTCTTTTCTGTAGCAATGACAATCACAGTTATTTCCAGACTCTGTTGTCCATAGTTAGATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTAGGTTGATGTTTTTAGGTTGTACAGCAACCAGAGAGCCCCTTCGTCAGTTTATACATGATGAGGTCATAGGTCAAGAGGAGAA---TGACAGGAAACAGGGACAAGCACAGGAAGGTCAGTACTGAAAGAAGTTGGT---GCA--CTTCTTAAG----GGGTAGACAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2133896 503 -   3067355 TGAAGATATTTCTGTGAAGAGTTTTGTACTGAGAACATCA---------CACCA-GGACAACTCCTTGAAGGGCATTAA-TTGCAGCTTTGGGATTTATACTCCCAAAGGCCCCAATCAATGAAAGACTATCCCATTATTCTTTTTGTTTCCATAAAGATTGCATTTGCTCTGGGATAAAGGGTCCATCCCGTGATACCTTGAATGCCCTAAAGTATTCCCACATTCTGCTAAAAAGCAGATCTTTTGGACAAACTCAGGCTCTCTTGTCTGTAGCAATGACAATCACAGTTATTTCCAGACTCTGTTCTTCATAGTTAGATTTAAAACATTGGCAAAAATGTTATAAGAAGGCAATTAAGTTGATGTTTTGAGGTTGTACAGCAACCAGAGAGCCCCTTCGTCAGTTTATACTTAATGAGGTCATAGGTCAGGAAGAGAG---TGACAGGGAACAGGGACAAACACAGGAAGGTCAGTACTGAAAGAAGTTGGT---GCA--CTTCTTAAG----GGGTAGGCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171584507 491 - 171630274 TGAAGATATGTCTGTGAAGAGTTTTGTACTGAGAACGTCA---------CACCA-GGACAACGCCTCGAAGGGCATTGA-TTGCAACCTTGGGATTTATACTCCCAAAGGTCCCAGTCAAGGAAAGAGTATCTCATTATTCTTTTTGTTTTCATAAAGCTACCATTTACACTGGGATAAAGGGTCCATCCCCTGATACCTTGAATGCCCTGAAGTATTCCCACATTCTGCTAAAAAGCAAATCTTTTGGACAAACTCAGGCTCTCTTTTCTGTAGCAATGACAAT--CAGTTATTTCCAGA--CTGTTCTCCCTAGTTAGATTT-AAACACTGGCAAAAATGTCATAAGAAGGCAATCAGATTGATGTTTTTAGGTTGTATAA-----AGAGAGCCTTTTCATCAGTTTATACATGATGAGGTCGTAGACCATGAAGAGAG---GGAC--GGAACATGGACAAACACAGGAAGGTCAGTACTGAAAGAAGTTGGT---GCA--CTTCTTAAG----AGGTGGACAG
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1697549 505 -   2232465 TGGAG-TATTTCTGTGAAGCATTTTGTGTTGTGAACATCA---------CACCATGGACAACTCCTTGAGGGGCATTAA-TTGCAACTTTGGGAGTTATCCTCCCGAGAGTGCCAGCCAAGGAAAGAAAATCCCATTATTCTTTGTGTTTTCATAAAGTTTCCATTTGCTTTGGGATAAGGGGTCCATCCCTGGATACCTTGAATGCCCTGAAGTGTT-CTGCATTTTGTTAAAAGGTAGCTCTCCTGTACAAACTCAGGCTCTTTCTTCTGTAGCAATGATGTGCACAGTTATTTTCAGATTCTGTTCTCCACAGTTATATTTAGTACATTGGTAAAAACAGTCTAAGGAGACAATTAGGTTGATGTTTCAAGGTTGCATGACAATCAGAGAGCCTC-ACATCAGTTTATAC---ATCAGGTCATAGACCAGGAAGAGAA---CAACAGGAAACATGGACAAACCCAAGAAGGTCAGTACTGAAGAAAGTTGATAGAGCA--CAGCTTAAGAACTAGATAGAGAG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            294259 512 -    859332 TGAAGGCATTTCTAGAAGGATTCTTGC-TTGTGAACATCACACCTTTCTCACCA-GGACAGCTCCTTGAAAGACTTTAATTTGTCACTTTGGGGTTTATTCTCCCAGTGGCCCCAGCCAGGGGAAGCAGGCCATATTCCTCTTT-TGTTTCCATAAAAGCCCCATAGACCCTGGGATAAAAGTTCCTTCCCTTGTCA-TTTGAATGTCCTAAAGTGATCCCACATTCTGCTAAAA-GCCAACATTTTGGACAGATCCAGGCTCCCTCTGCCGTGACAGTAGAAATCACAGGTATTTTCAGACTCTGCTTTCCACAGTTAGATTTGGTGTGTTAGAAAAGAGGGTAT-AGAGGGAAATCAGGTTGATACTTTTGGGACACATGACACCTAGAGAACCCC-ACATTGGTTTATCCACGGTGAGTGCATAGACCAGGAAGAGAAGATCAACAGCGAACGTGAACGAACACAGGAAGGTCAGTACTGTATGGAACGGAT---GGAGCCTGCTTAAG----AGCCAGGCAG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1079492.000000
s hg38.chr6_GL000254v2_alt    436886 203 +   4827813 CTTCCatatttcaaaattgcagaaagtgtagattttaaatgttcttactacaaaaatatgatggttgtggggtgatggatatgttaactagcttaatataatcattctataa--tgtatatatacatcaaaacattacagtgtactccataaatatatacaattattactagtcaatgaaaaatT-AAGAAAACAAACCAGATATA
s panTro5.chr6              29417889 203 + 175400573 CTTCCatatttcaaaattgcagaaagtgtagattttaaatgttcttactacaaaaatatgatggttgtggggtgatggatatgttaactagcttaatataatcattctataa--tgtatatatacatcaaaacattacagtgtactccataaatatatacaattattactagtcaatgaaaaatT-AAGAAAACAAACCAGATATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29659622 203 + 173848474 CTTCCatatttcaaaattgcagaaagtgtagattttaaatgttcttactacaaaaatatgatggttgtggggtgatggatatgttaactagcttaatataatcattctataa--tgtatatatacatcaaaacattacagtgtactccataaatatatacaattattactagtcaatgaaaaatT-AAGAAAACAAACCAGATATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5444252 203 +   6154872 CTTCCatatttcaaaattgcaaaaagtgtagattttaaatgttcttactacaaaaatatgatggttgtggggtgatggatatgttaactagcttaatataatcattctataa--tgtatatatacatcaaaacattacagtgtactccataaatatatacaattattactagtcaatgaaaaatT-AAGAAAACAAACCAGATATA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29605820 203 + 172585720 CTTCCatatttcaaaattgcagaaagtgtagattttaaatgttcttactacaaaaatatgatggatgtgaggtgatggatgtattaactagcttaatataatcattctgtaa--tgtatatatacgtcaaaacattacaatgtactccataaatatatgcaattattactggtcaatgaaaaatT-AAGAAAACAAACCAGATATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29267061 203 - 170955103 CTTCCatatttcaaaattgcagaaagtgtagattttaaatgttcttactacaaaaatatgatggatgtgaggtgatggatgtattaactagcttaatataatcattctgtaa--tgtatatatacatcaaaacattacaatgtactccatagatatatgcaattattactggtcaatgaaaaatT-AAGAAAACAAACCAGATATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2277093 203 -   2996164 CTTCCatatttcaaaatcgcagaaagtgtagattttaaatgttcttactacaaaaatatgatggatgtgaggtgatggatgtattaactagcttaatataatcattctgtaa--tgtatatatacgtcaaaacattacaatgtactccatagatatatgcaattattactggtcaatgaaaaatT-AAGAAAACAAACCAGATATA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28564660 203 -  71996105 CTTCCatatttcaaaatcgcaggaagtgtagattttaaatgttcttactacaaaaatatgatggttgtgaggtgatggatatattaactagcttaatataatcattctgtaa--tgtatatatacatcaaaacattacaatgtactccataaatatatgtaattattactagtcaatgaaaaatT-AAGAAAACAAACCAGATATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2294772 203 +   2316924 CTTCCatatttcaaaattgcagaaagtgtagattttaaatgttcttactacaaaaatatgatggatgtgaggtgatggatatattaactagcttaatataatcattctgtaa--tgtatatatacatcaaaacattacgatatactccataaatatatgcaattattactggtcaatgaaaaatT-AAGAAAACAAACCAGATATA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2134399 203 -   3067355 CTTCCatatttcaaaattgcagaaagtgtagattttaagtgttcttactacaaaaatatgatggttgtgaggtgatggatgtattaactagcttaatataatcattctgtaa--tgtatatatacatcaaaacattacaatgtactccataaatatatgcaattattactagtcaatgaaaaatT-AAGAAAACAAACCAGATATA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171584998 200 - 171630274 TTTCCatatttaaaaattgca--aagtttagattttacatgttcttactacaaaataatgatggttgtgaggtgatgcatatattaactagcttaatataatcattctataatgtgtatatatatatcaaaacattacaatgtacttcataaata----caattattactagtcaatgaaaaattaaaGAAAATAAACCAGATATA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1698054 200 -   2232465 Cttctatatttcaaaattgctaaaagagtagttcgtaaatgtttttactacaaaaaaa-gat--ctgtgaggtgatgaatgtgttaattagcttaatgtaatgattccgcaa--tgtatatgtgtatcaaaacattccattgtaccctatacatatatacaattattattcaacaattaaaagtt-aaaGTAAAAAACCAAATATA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            294771   0 -    859332 C
e canFam3.chr35             26138168 1234 +  26524999 T
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1855929.000000
s hg38.chr6_GL000254v2_alt    437089 353 +   4827813 GTATAAAGGAATGGATGTGACACAAATTGGCATAATGTCTCTTAATAATAATTGGGGAAGGAAGAGACACTCAGCCATCCATTTTCCCTATAGTATTTGATTTAAAAAA-AGAGAGAAGATATTTTATTCTACAACTCATAAAAGCTACATTTGATAGGGTCTTCATTTCCCTCTTTTCCACCAAGAAGAAAATTGA-------AGCTG-AGACTTTTCTCTACATGAGTTCTGGG----GGTTTTTTT-------------GTCCCTTATTTCCTATCCCTTTTATCAACTCCGGAGGAATGCTGAAAGATGGG-------TCATATAACAGAT----------AG-------TTATCAGATTCCACCTTTT---AATTACTGTAATAAGGAACTCAGGCAGCTG
s panTro5.chr6              29418092 353 + 175400573 GTATAAAGGAATGGATGTGACACAAATTGGCATAATGTCTCTTAATAATAATTGGGGAAGGAAGAGACACTCAGCCATCCATTTTCTCTATAGTATTTGATTTAAAAAA-AGAGAGAAGATATTTTATTCTACAACTCATAAAAGCTACATTTGATAGGGTCTTCATTTCCCTCTTTTCCACCAAGAAGAAAATTGA-------AGCTG-AGACTTTTCTCTACATGAGTTCTGGG----GTTTTTTTT-------------GTCCCTTATTTCCTATCCCTTTTATCAACTCCGGAGGAATGCTGAAAGATGGG-------TCATATAACAGAT----------AG-------TTATCAGATTCCACCTTTT---AATTACTGTCATAAGGAACTCAGGCAGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29659825 353 + 173848474 GTATAAAGGAATGGATGTGACACAAATTGGCATAATGTCTCTTAATAATAATTGGGGAAGGAAGAGACACTCAGCCATCCATTTTCCCTATAGTATTTGATTTAAAAAA-AGAGAGAAGATATTTTATTCTACAACTCATAAAAGCTACATTTGATAGGGTCTTCATTTCCCTCTTTTCCACCAAGAAGAAAATTGA-------AGCTG-AGACTTTTCTCTACATGAGTTCTGGG----GTTTTTTTT-------------GTCCCTTATTTCCTATCCCTTTTATCAACTCCGGAGGAATGCTGAAAGATGGG-------TCATATAACAGAT----------AG-------TTATCAGATTCCACCTTTT---AATTACTGTCATAAGGAACTCAGGCAGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5444455 352 +   6154872 GTATAAAGGAATGGATGTGACACAAATTGGCATAATGTCTCTTAATAATAATTGGGGAAGGAAGAGACACTCAGCCATCCATTTTCCCTATAGCATTTGATTT-AAAAA-AGAGAGAAGATATTTTATTCTACAACTCATAAAAGCTACATTTGATAGGGTCTTCATTTCCCTCTTTTCCACCAAGAAGAAAATTGA-------AGCTG-AGACTTTTCTCTACATGAGTTCTGGG----TTTTTTTTG-------------GTCCCTTATTTCCTATCCCTTTTATCAACTCCGGAGGAATGCTGAAAGATGGG-------TCATATAACAGAT----------AG-------TTATCAGATTCCACCTTTT---AATTACTGTAATAAGGAACTCAGGCAGCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29606023 353 + 172585720 GTATAAAGGAATGGATGTGACACAAGTTGGCAAAATGTCTCTTAATAATAACTGGGGAGGGAAGAGACACTCAACCATCCATTTTCCCTGCAGTGTTTGATTT-AGAAG-AGAGAGAAGGTATTTTATTCCACAGCTCATAGAAGCTACATTTGATAGGGTCTTCATTTCCCTCTTTTCCACCAAGAAGAAAATCGA-------AGCTGCAAACTTTTCTCTACATGAGTTCTGAG----TTTTTTTTT-------------GTCCCTTATTTCCTATCCCTTTTATCAACTCTGGAGGAATACTGAAAGATGAG-------TCATACAACAGAT----------AG-------GTATCAGATTCCACTTTTT---AATTACTGTAATAAGGAACGCAGGCAGCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29267264 353 - 170955103 GTATAAAGGAATGGATGTGACACAAGTTGGCAAAATGTCTCTTAATAATAACTGGGGAAGGAAGAGACACTCAACCATCCATTTTCCCTACAGTGTTTGATTT-AGAAG-AGAGAGAAGGTATTTTATTCCACAGCTCATAGAAGCTACATTTGATAGGGTCTTCATTTCCCTCTTTTCCACCAAGAAGAAAATCGA-------AGCTGCAAACTTTTCTCTACATGAGTTCTGGG----TTTTTTTTT-------------GTCCCTTATTTCCTATCCCTTTTATCAACTCTGGAGGAATACTGAAAGATGAG-------TCATACAACAGAT----------AG-------GTATCAGATTCCACTTTTT---AATTACTGTAATAAGGAACGCAGGCAGCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2277296 349 -   2996164 GTATAAAGGAATGGATGTGACACAAGTTGGCAAAATGTCTCTTAATAATAACTGGGGAAGGAAGAGACACTCAACCATCCATTTTCCCTACAGTGTTTGATTT-AGAAG-AGAGAGAAGGTATTTTATTCCACAGCTCATAGAAG---CATTTGATAGGGTCTTCATTTCCCTCTTTTCCACCAAGAAGAAAATCGA-------AGCTGCAAACTTTTCTCTACATGAGTTCTGGG-----TTTTTTTT-------------GTCCCTTATTTCCTATCCCTTTTATCAACTCTGGAGGAATACTGAAAGATGAG-------TCATACAACAGAT----------AG-------GTATCAGATTCCACTTTTT---AATTACTGTAATAAGGAACGCAGGCAGCTG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28564863 367 -  71996105 GTATAAAGGAATGGATGTGACACAAATTGGCAAAATGTCTCTTAATAATAATTGGGGAAGGAAGAGACACTCAGCCATCCATTTTCCCTACAGTGTTTGATTT-AAAAGAAGAGAGAAGGTATTTTATTCTATAGCTCGTAGAAGCTACATTTGATAGGGTCTTCATTTCCCTCTTTTCCACCAAGAAGAAAATCGA-------AGCTGCAAACTTTTCTCTACATGAGTTCTGGG----TTTTcttttttttttttttttggttCCTTATTTCCTATCCCTTTTATCACCTCTGGAGGAATGCGGAAAGATGAG-------TCATACAACAGAT----------AG-------TTACCAGATTCCACCTTTT---AATTACTGTAATAAGGAACTCAGGCAGCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2294975 352 +   2316924 GTATAAAGGAATGGATGTGACACAAGTTGGCAAAATGTCTCTTAATAATAACTGGGGAAGGAAGAGACACTCGACCATCCATTTTCCCTACAGTGTTTGATTT-AGAAG-AGAGAGAAGGTATTTTATTCCACAGCTCATAGAAGCTACATTTGATAGGGTCTTCATTTCCCTCTTTTCCACCAAGAAGAAAATCGA-------AGCTGCAAACTTTTCTCTACATGAGTTCTGGG----GTTTTTTTT-------------GTCCCTTATTTCCTATCCCTTTTATCAACTCTGGAGGAATGCTGAAAGATGAG-------TCATACAACAGAT----------AG-------TTATCAGATTCCACTTTTT---AATTACTGTAATAAGGAAC-CAGGCAGCTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2134602 371 -   3067355 GTATAAAGGAATGGATGTGACACAAATTGGCAAAATGTCTCTTAATAATAATTGGGGAAGGAAGAGACACTCAGCCATCCATTTTCCCTACAGTGTTTGATTT-AAAAG-AGAGAGAAGATATTTTATTCCACAGCTCATAGAAGCTACATTTGATAGGGTCTACATTTCCTTCTTTTCCACCAAGAAGAAAATCGA-------AGCTGCAAACTTTTCTCTATATGAGTTCTGGG----Ctttttttt--ttttttttttGGTCCCTTATTTCCTATCCCTTTTATCAACTCTGGAGGAATGCTGAAAGATGAAAGATGACTCATACAACAGAT----------AG-------TTATCAGATTCCACCTTTT---AATTACTGTAATAAAGAACTCAGGCAGCTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171585198 357 - 171630274 GTATAAAGGAGTGGATATTACATAAATTGGGAAAATGTCTCTTAGTAATAATTGGGGAAAGAAGAGATACTCAGCGATCCATTTTCTCTATAGTGTTTGATTTAAAAGA-ATAGACAAGATATTTTATTCCGTAGCTCATGGAAGCTACATAGGATAGGGTATTCATTTCCCTCTTTTCCACTAAGAAGAAAATAGA-------AGCGT-AAACTTTTTTCTACATGAGTTCTGGTTATTTTTTTTTTT-------------GTCCCTTATTTTCTATCCCTTATATCGACTCTGGAAGAATGCTGAAAGATAAG-------TCATACTAGAGAA----------AA-------ATATCAGATTCCACCTTTT---AATTACTGTAGTAAGGAACTCAGGCAGCTG
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1698254 362 -   2232465 TTAAAAAGGAATGAATATGAAAAAAATTAGAAAAATCTCTGCTAGTAATAATGGGACAAGAAGAGAGTGCTAAGCTGTCCATTTTCCCCATAGTGTTTGATTTAAAAGA-AGAGAGAAAATATTCTATTCCATGGCTCATAAAAGCTACATTTGATAGGGTCCCCATTTTGTTCTTTTCCACCAAGTAGAAGATCAA-------AACTCCAATTTTTTTTCTA-ATTAGTTCCCTA-----TTTTTTTA-------------GTCCTATATCTCTGATCCCTCTTTTCATCTTTAGAAGAATGCTGAAAGACTGG-------TCATACAACAAAT----------AAAAGAAATATGACATCTTCCACTTTCTTTAAATTAATGTAATAAGGAATTCAGGCAGCTG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            294771 313 -    859332 ACATGAAGGATCGGGTGTGACTAAAGTTAGCAAAAGT--------------------------------CTAAGTCTTCCATTTTCTTCATAATGCCTGATTCCAAAGA-AGAGACAGTAT-TTTTAATCCACAGCCCATAAAAGCCACCTTTGATAGGGT---CACTTCACTCTTTTCCACTAAGAATAAACTCAAACCATGGAGCTC--AACTTTTCTCTGCATGA----------------------------------GTCCTTTTGCTCCTATACCCTT--CTACCTCTAGGAGAATGCTGAAA-CTGGG-------TTATACAACAGATACAGAAATACAG-------CTGCCACTTTCTTTTTTTA---AAAAACGTTATTAAAGTAgggaagcagctg
i dasNov3.JH570037         C 0 I 510
e canFam3.chr35             26138168 1234 +  26524999 T
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=13878.000000
s hg38.chr6_GL000254v2_alt    437442 5 +   4827813 CATTC-
s panTro5.chr6              29418445 5 + 175400573 CATTA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29660178 5 + 173848474 CATTA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5444807 5 +   6154872 CATTA-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29606376 5 + 172585720 CAATA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29267617 5 - 170955103 CAATA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2277645 5 -   2996164 CAATA-
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28565230 5 -  71996105 CAATA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2295327 5 +   2316924 CAATA-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2134973 5 -   3067355 CAATA-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171585555 5 - 171630274 CATTT-
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1698616 6 -   2232465 CATTAT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            295084 510 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=411182.000000
s hg38.chr6_GL000254v2_alt    437447 75 +   4827813 GGAAAGAAAATTAGGTCGGCATCAGCAAAAGTATCCACAGCATTTGAGTTCAAGTATCTTATGG---------CATATTACCTT
s panTro5.chr6              29418450 75 + 175400573 GGAAAGAAAATTAGGTCGGCATCAGCAAAAGTATCCACAGCATTTGAGTTCAAGTATCTTATGG---------CATATTACCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29660183 75 + 173848474 GGAAAGAAAATTAGGTCGGCATCAGCAAAAGTATCCACAGCATTTGAGTTCAAGTATCTTATGG---------CATATTACCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5444812 75 +   6154872 GGAAAGAAAATTAGGTCGGCATCAGCAAAAGTATCCACAGCATTTGAGTTCAAGTATCTTATGG---------CATATTACCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29606381 75 + 172585720 GAAAAGAAAATTAGGTCTACATCAGCAAAAGTATACACAGCATTTGAGTTCAAGTATCTTATGG---------CATATTACCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29267622 75 - 170955103 GAAAAGAAAATTAGGTCTACATCAGCAAAAGTATACACAGCATTTGAGTTCAAGTATCTTATGG---------CATATTACCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2277650 75 -   2996164 GAAAAGAAAATTAGGTCTACATCAGCAAAAGTATACACAGCATTTGAGTTCAAGTATATTATGG---------CATATTACCTT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28565235 75 -  71996105 GGAAAGAAAATTAGGTCTACATCAGCAAAAGTATCCACAGTATTTGAGTTCAAGTATCTTATGG---------CATATTACCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2295332 75 +   2316924 GAAAAGAAAATTAGGTCTACATCAGCAAAAGTATACACAGCATTTGAGTTCAAGTATCTTATGG---------CATATTACCTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2134978 75 -   3067355 GGAAAGAAAATTAGGTCTACATCAGCAAAAGTATCCACAGCATTTGAGTTCAAGCATCTTATGG---------CATATTACCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171585560 75 - 171630274 GGAAAGAAAGTTATGCCTGCGTTCACAAAAGTATCCACAGTGTTTGAGTTCGAGTGTCATATGG---------AATCTTACCTT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1698622 84 -   2232465 GGGAAGAAAATAATGTCTGCATCACAGAAAGCATCCATAGTACTTAAGTTCAAGTATCTCATGGATATGTGCTTGTATTACTTC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            295594 68 -    859332 GGGAAGAAAG------CTGCATCAGAGGCAGTAACC-CAGTGTTTGAGTTCAAATTTTATGTGC---------TATATTACTTT
i dasNov3.JH570037         I 510 I 137
e canFam3.chr35             26138168 1234 +  26524999 T
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=242583.000000
s hg38.chr6_GL000254v2_alt    437522 49 +   4827813 TCATCTTAGGGAGATTTAAAAAAA--TCCTTGGAATTTTCCCATGATTTCT
s panTro5.chr6              29418525 50 + 175400573 TCATCTTAGGGAGATTTAAAAAAA-ATCCTTGGAATTTTCCCATGATTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29660258 51 + 173848474 TCATCTTAGGGAGATTTAAAAAAAAATCCTTGGAATTTTCCCATGATTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5444887 49 +   6154872 TCATCTTAGGGAGATTTAAAAAAA--TCCTTGGAATTTTCCCATGATTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29606456 50 + 172585720 TAATCCTAGGGAGATTTTAAAAAA-ATTCTTGGAATTTTCCCATGATTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29267697 50 - 170955103 TAATCCTAGGGAGATTTTAAAAAA-ATTCTTGGAATTTTCCCATGATTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2277725 50 -   2996164 TAATCCTAGGGAGATTTTAAAAAA-ATTCTCGGAATTTTCCCATGACTTCT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28565310 50 -  71996105 TAATCCTAGGGAGATTTTTAAAAA-ATTCTTGGAATTTTTCCATGATTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2295407 50 +   2316924 TAATCCTAGGGAGATTTTAAAAAA-ATCCTTGGAATTTTCCCATGATTTCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2135053 50 -   3067355 TAATCCTAGGGAGATTTTTAAAAA-ATTCTTGGAATTTTCCCATGATTTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171585635 50 - 171630274 TCATCCTAAGGAGATTTAAAAAAT-ATTTTTGGAATTTTTCCATGATTTCT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1698706 50 -   2232465 TCATTTTAGGGAAATTAAAAAAAA-TTCCTTGGAATTTTTCCATTACCTCT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            295662 137 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=268539.000000
s hg38.chr6_GL000254v2_alt    437571 50 +   4827813 CAAAAGGTTAATGCTCATTC-CATTACCAACAATATGGAAAAATGTACAGT
s panTro5.chr6              29418575 50 + 175400573 CAAAAGGTTAATGCTCATTC-CATTACCAACAATATGGAAAAATGTACAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29660309 50 + 173848474 CAAAAGGTTAATGCTCATTC-CATTACCAACAATATGGAAAAATGTACAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5444936 50 +   6154872 CAAAAGGTTAATGCTCATTC-CATTACCAACAATATGGAAAAATGTACAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29606506 50 + 172585720 CAAAAGGTTAATGCTCATTC-CATTATCAACAATATGGAAAAATGTACAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29267747 50 - 170955103 CAAAAGGTTAATGCTCATTC-CATTATCAACAATATGGAAAAATGTACAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2277775 50 -   2996164 CAAAAGGTTAATGCTCATTC-CATTATCAACAATATGGAAAAATGTACAGT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28565360 50 -  71996105 CAAAAGGTTAATGCTCATTC-CATTACCAACAATATGGAAAAATGTACAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2295457 50 +   2316924 CAAAAGGTTAATGCTCATTC-CATTACCAACAAAAGGGGAAAATGTACAGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2135103 50 -   3067355 CAAAAGGTTAATGCTCATTC-CATTACCAACAATATGGGAAAATGTACAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171585685 49 - 171630274 CAAAAGGCGAATGATCA-TC-CATTACCAATGACATGGAAAAGTGTACAGT
i calJac3.chr4             C 0 I 257
s otoGar3.GL873742           1698756 46 -   2232465 CAAAAGGTTAATGATCATTTATATTACCAAGAATATGCAGAGGTGT-----
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            295799 51 -    859332 CAATCAGCTAATGATTCTTTATATTACCAATTATATTAAAGGGTGTACAGA
i dasNov3.JH570037         I 137 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=5005.000000
s hg38.chr6_GL000254v2_alt    437621 1 +   4827813 A
s panTro5.chr6              29418625 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29660359 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5444986 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29606556 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29267797 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2277825 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28565410 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2295507 1 +   2316924 A
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2135153 1 -   3067355 A
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            295850 1 -    859332 A
i dasNov3.JH570037         C 0 I 1
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1698802 0 -   2232465 C
e calJac3.chr4             171585734 257 - 171630274 I
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=963220.000000
s hg38.chr6_GL000254v2_alt    437622 170 +   4827813 TCTTTGTACCAGTCTGGAGCATTTGCACAGATTTGGCCCAAGTTCAATGTTCCTAGCTCTCCAGCTGTAACTCAACCAGTTAGGCAACTCCTTACATCTTTTTCAAGAGTCAAGATTACAATACTTGAGTTATTAAAAGTTTTTCAAAA-------CACTGAAGGTGAGTCGGGTGT
s panTro5.chr6              29418626 170 + 175400573 TCTTTGTACCAGTCTGGAGCATTTGCACAGATTTGTCCCAAGTTCAATGTTCCTAGCTCTCCAGCTGTAACTCAACCAGTTAGGCAACTCCTTACATCTTTTTCAAGAGTCAAGATTACAATATTTGAGTTATTAAAAGTTTTTCAAAA-------CACTGAAGGTGAGTCGGGTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29660360 170 + 173848474 TCTTTGTACCAGTCTGGAGCATTTGCACAGATTTGGCCCAAGTTCAATGTTCCTAGCTCTCCAGCTGTAACTCAACCAGTTAGGCAACTCCTTACATCTTTTTCAAGAGTCAAGATTACAATATTTGAGTTATTAAAAGTTTTTCAAAA-------CACTGAAGGTGAGTCGGGTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5444987 170 +   6154872 TCTTTATACCAGTCTGGAGCATTTGCACAGATTTGGCCCAAGTTCAATGTTCCTAGCTCTCCAGCTGTAACTCAACCAGTTAGGCAACTCCTTACATCTTTTTCAAGAGTCAAGATTACAATATTTGAGTTATTAAAAGTTTTTCAAAA-------CACTGAAGGTGAGTCGGGTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29606557 169 + 172585720 TCTTTGTACCTGTCTGGAGCATTTGCATAGATTTGGCCCGAGTTTAATGTTCCTAGCTCTCCAGCTGTAACTCGACCAACTAGGCAACTCCTTACATCTTTTTCAAGAGTCAAGATTACAATATTTGAG-TATTAAAAGTTTTTCAAAA-------CACTGAAGGTGAGTCGGGTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29267798 169 - 170955103 TCTTTGTACCTGTCTGGAGCATTTGCATAGATTTGGCCCGAGTTTAATGTTCCTAGCTCTCCAGCTGTAACTCGACCAACTAGGCAACTCCTTACATCTTTTTCAAGAGTCAAGATTACAATATTTGAG-TATTAAAAGTTTTTCAAAA-------CACTGAAGGTGAGTCGGGTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2277826 169 -   2996164 TCTTTGTACCTGTCTGGAGCATTTGCATAGATTTGGCCCGAGTTTAATGTTCCTAGCTCTCCAACTGTAACTCGACCAACTAGGCAACTCCTTACATCTTTTTCAAGAGTCAAGATTACAATATTTGAG-TATTAAAAGTTTTTCAAAA-------CACTGAAGGTGAGTCGGGTGT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28565411 169 -  71996105 TCTTTGTACCTCTCTGGAGCATTTGCCTAGATTTGGCCTGAGTTTAATGTTCCTAGCTCTCCAGCTGTAACTCAACCAATTAGACAACTCCTTACATCTTTTGCAAGAGTCAAGATTACAATATTTGAG-TACTAAAAGTTTTTCAAAA-------CACGGAAGGTGAGTCGGGTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2295508 169 +   2316924 TCTTTGTACCTGTCTGGAGCATTTGCATAGATTTGGCCCGAGTTTAATGTTCCTAGCTCTCCAGCTGTAACTCGACCAATTAGGCAACTCCTTACATCTTTTTCAAGAGTCAAGATTACAATATTTGAG-TATTAAAAGTTTTTCAAAA-------CACTGAAGGTGAGTTGGGTGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2135154 169 -   3067355 TCTTTGTACCTGTCTGGAGCATTTGCATAGATTTGGCCCGAGTTTAATGTTCCTAGCTCTCCAGCTGTAACTCAACCAATTAGGCAACTCCTTACATCTTTTTCAAGAGTCAAGATTACAATATTTGAA-TATTAAAAGTTTTTCAAAA-------CATGGAAGGTGAGTCGGGTGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171585991 170 - 171630274 TCTTTGTACCTATCCGGAGCATTTGCAAAGACTTGGCCCAAGTGCAATGTTCCTAGCTCTCCAGCTGTAACTCAATTAACTAGGCAATCCCTTACATCTTTTTCAAGAGTCAACATTACAATATTTGAGTTATTAAAAGGTTTTCAAAA-------CACTGAAGGTGAGTCGGGTGT
i calJac3.chr4             I 257 C 0
s otoGar3.GL873742           1698802 166 -   2232465 ---TTATTCCTGCCTGAATCAGTCTCACTGGTTTGGCCCAAGATCAGTGTTCCTAGATCTCTAGCTGTAATTCAACTAATTAGAC-ACTCCTTACACCTTTTTCAAGGGTACATATCATAGTATTTCAGCCTTTAAATGTTCTTCAATA-------GACTGAAGGTGAGTCTGTTGT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            295852 167 -    859332 TCCTTGAGCTTGCCTGAATTAT---------CTTGGGTCAGATTTAATGTCCCTAGTTCTCTAGCTGTAACACAACTAATTAGAT-ACACTTTACCTCCATTTCAAAAGTCACGATTACAATATTTGGACAATTAAGAGTTCTCCATAAAAGAGGTGATTGCAGGTAGGTGAGGTGT
i dasNov3.JH570037         I 1 I 11
e canFam3.chr35             26138168 1234 +  26524999 T
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=58570.000000
s hg38.chr6_GL000254v2_alt    437792 16 +   4827813 AGA---------------------------TATTAGttttttg
s panTro5.chr6              29418796 16 + 175400573 AGA---------------------------TATTAGttttttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29660530 16 + 173848474 AGA---------------------------TATTAGttttttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5445157 16 +   6154872 AGA---------------------------TATTAGttttttg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29606726 43 + 172585720 AGATAAATTTGTCTTTTGCCTTATTATCATTATTAtttttttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29267967 43 - 170955103 AGATAAATTTGTCTTTTGCCTTATTATCATTATTAtttttttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2277995 43 -   2996164 AGATAAATTTGTCTTTTGCCTTATTATCATTATTAtttttttc
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28565580 43 -  71996105 AGATGAATTTGTCTTTTGCCTTATTATCATTATTAtttttttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2295677 43 +   2316924 AGATAAATTTGTCTTTTGCCTTATTATCATTATTAtttttttg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2135323 43 -   3067355 AGATAAATTTGTCTTTTGCCTTATTATCATTATTAtttttttg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171586161 18 - 171630274 AAATAAATTTGTCTTTTG-------------------------
i calJac3.chr4             C 0 I 5
s otoGar3.GL873742           1698968 18 -   2232465 GGTTGAATTTGTCTTTTG-------------------------
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            296019 11 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=86118.000000
s hg38.chr6_GL000254v2_alt    437808 21 +   4827813 agacagagtcttgctctgtca
s panTro5.chr6              29418812 21 + 175400573 agacagagccttgctctgtca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29660546 21 + 173848474 agacagagccttgctctgtca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5445173 21 +   6154872 agacagagtcttgctctgtca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29606769 21 + 172585720 agacagagtcttgctctgtca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29268010 21 - 170955103 agacagagtcttgctctgtca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2278038 20 -   2996164 agaca-agtcttgctctgtca
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28565623 21 -  71996105 agacagattcttgctctgtca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2295720 21 +   2316924 agacagagtcttgctctgtca
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2135366 21 -   3067355 agacagagtcttgctctgtca
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1698986 13 -   2232465 --------CCTTATTCTATCA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            296019 11 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171586179  5 - 171630274 I
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=965282.000000
s hg38.chr6_GL000254v2_alt    437829 265 +   4827813 ccca-ggctggagggcaat-ggcatgatctcagctcactgcaacctccacctcctgggttcaagc-gattctcct--gcctca-gcctccagagtagctggtattacaggtgcccactaccatgcctgcctggctaatttttgtatt--ttttagtaga-gatggtgtttcaccacgttggtca-ggctggtctcgaactcctgacctcaggtgttccacctgcctcggcctcccaaaatgctgagattacaggcatgagccaccacgcctggcc
s panTro5.chr6              29418833 265 + 175400573 ccca-ggctggagggcaat-ggcatgatctcagatcactgcaacctccgcctcctgggttcaagc-gattctcct--gcctca-gcctccagagcagctggtattacaggtgcccaccaccatgcctgcctggctaatttttgtatt--ttttagtaga-gacggtgtttcaccacgttggtca-ggctggtctcgaactcctgacctcaggtgttccacctgcctcggcctcccaaagtgctgagattacaggcatgagccaccacgcccggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29660567 265 + 173848474 ccca-ggctggagggcaat-ggcatgatctcagatcactgcaacctccgcctcctgggttcaagc-gattctcct--gcctca-gcctccagagtagctggtattacaggtgcccaccaccatgcctgcctggctaatttttgtatt--ttttagtaga-gacagtgtttcaccacgttggtca-ggctggtctcgaactcctgacctcaggtgttccacctgcctcggcctcccaaagtgctgagattacaggcatgagccaccacgcccggcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5445194 265 +   6154872 ccca-ggctggagggcaat-ggcatgatctcagctcactgcaacctccgcctcctgggttcaagc-gattctcct--gcctca-gcctccagagtagctggtattacaggtgcccaccaccatgcctgcctggctaatttttgtatt--ttttagtaga-gacggtgtttcaccacgttggtca-ggctggtctcgaactcctgacctcaggtgttccacctgcctcggcctcccaaagtgctgagattacaggcatgagccaccacgcccggcc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29606790 261 + 172585720 ccca-ggctggagggcaat-ggtgcgatctcagctcactgcaacctccgtctcccaggttcaagt-gattctcct--gcctca-gcttccagagtagctggtattacaggtgtccaccacca----tgcctggctaatttttgtatt--ttttagtaga-gacggtgtttcaccatgttggtca-ggctggtctcgaactcctgacctcaagtgttccacctgcctcggcctcccaaaatgctgggattacaggcatgagccaccacacccagtc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29268031 261 - 170955103 ccca-ggctggagggcaat-ggtgcgatctcagctcactgcaacctccgtctcccaggttcaagt-gattctcct--gcctca-gcttccagagtagctggtattacaggtgtccaccacca----tgcctggctaatttttgtatt--ttttagtaga-gacggtgtttcaccatgttggtca-ggctggtctcgaactcctgacctcaagtgttccacctgcctcggcctcccaaaatgctgggattacaggcatgagccaccacacccagtc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2278058 268 -   2996164 cccagggctggagggcaatgggtgcgacttcagctcactgcaacctccgtcctcccaggtcaagtggattctcctgggcctcaggcttccagagtagctggtattacaggtgctcaccaccg----catcctggtaatttttgtatgtattttagtagaggacggtgtttcaccatgttggtcagggctggtctcaaactcctgacctcaagtgtt-cacctgctggggcctcccaaaatgct-ggattacaggcatg-gccaccacacccagtc
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28565644 261 -  71996105 ccca-ggctggagggcaat-ggtgcgatctcagctcactgcaacctctgtctcccaggttcaagt-gattctcct--gcctca-gcctccagagtagctggtattacaggtgtccaccacca----tgcctggctaatttttgtatt--ttttagtaga-gacggtgtttcaccatgttggtca-ggctggtctcgaactcctgacctcaggtgttccacctgcctcagcctcccaaaatgctgggattacaggcatgagccaccacacccggcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2295741 260 +   2316924 ccca-ggctggagggcaat-ggtgcgatctca-ctcactgcaacctccgtctcccaggttcaagt-gattctcct--gcctca-gcttccagagtagctggtattacaggtgtccaccacca----tgcctggctaatttttgtatt--ttttagtaga-gacggtgtttcaccatgttggtca-ggctggtctcaaactcctgacctcaagtgttccatctgcctcggcctcccaaaatgctgggattacaggcatgagccaccacacccagcc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2135387 261 -   3067355 ccca-ggctggaggacaat-ggtgtgatctcagctcacggcaacctccgtctcccaggttcaagt-gattctcct--gcttca-gcctccagagtagctggtattacaggtgtccaccacta----tgcctggctaatttttgtatt--ttttagtaga-gatggtgtttcaccatgttggtca-ggctgatctcgaactcctgacctcaggtgttccacctgccttggcctcccaaaatgctgggattacaggcatgagccaccacaccgggcc
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            296019  11 -    859332 I
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1698999   0 -   2232465 C
e calJac3.chr4             171586179   5 - 171630274 I
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=72108.000000
s hg38.chr6_GL000254v2_alt    438094 20 +   4827813 TCT--TTTGCCAAAT-TTATCAG-
s panTro5.chr6              29419098 20 + 175400573 TCT--TTTGCCAAAT-TTATCAG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29660832 20 + 173848474 TCT--TTTGCCAAAT-TTATCAG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5445459 20 +   6154872 TCT--TTTGCCAAAT-TTATCAG-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29607051 20 + 172585720 TCT--TTTGCCGAAT-TTATCAG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29268292 20 - 170955103 TCT--TTTGCCGAAT-TTATCAG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2278326 22 -   2996164 CTCTATTTGCCGAAT-TTATCAG-
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28565905 20 -  71996105 TCT--TTTGCCAAAT-TTATCAG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2296001 20 +   2316924 TCT--TTTGCCGAAT-TTATCAG-
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2135648 20 -   3067355 TCT--TTTGCCAAAT-TTATCAG-
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            296030 22 -    859332 TCT--TTTGTTATATCCTGTCTAG
i dasNov3.JH570037         I 11 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e otoGar3.GL873742           1698999  0 -   2232465 C
e calJac3.chr4             171586179  5 - 171630274 I
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=43499.000000
s hg38.chr6_GL000254v2_alt    438114 10 +   4827813 AGAGTATAAG
s panTro5.chr6              29419118 10 + 175400573 AGAGTATAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29660852 10 + 173848474 AGAGTATAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5445479 10 +   6154872 AGAGTTTAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29607071 10 + 172585720 AGAGTACAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29268312 10 - 170955103 AGAGTACAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2278348 10 -   2996164 AGTGTACAAG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28565925 10 -  71996105 AGAGTACAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2296021 10 +   2316924 AGAGTACAAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2135668  8 -   3067355 A--GTACAAG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1698999 10 -   2232465 AGAGTATGAG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            296052 10 -    859332 AGAGTATGAG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e calJac3.chr4             171586179  5 - 171630274 I
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=585181.000000
s hg38.chr6_GL000254v2_alt    438124 105 +   4827813 AGGAA-GAGTTGGCTGTGGCAGGAGGGGAGCAGAAGGGGGATGGCAAAACTATTTAGG-AATATTGAAA-TGC-TGGGTTCC--TGTATTTTATTG-CAAAAACTATATCAT
s panTro5.chr6              29419128 105 + 175400573 AGGAA-GAGTTGGCTGTGGCAGGAGGGGAGCAGAAGGGGGATGGCAAAACTATTTAGG-AATATTGAAA-TGC-TGGGTTCC--TGTATTTTATTG-CAAAAACTATATCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29660862 105 + 173848474 AGGAA-GAGTTGGCTGTGGCAGGAGGGGAGCAGAAGGGGGATGGCAAAACTATTTAGG-AATATTGAAA-TGC-TGGGTTCC--TGTATTTTATTG-CAAAAACTATATCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5445489 104 +   6154872 AGGAA-GAGTTGGCTGTGGCAGGAGGGGAGCAGAAGGGGGATGGCAAAACTATTTAGG-AATATTGAAA-TGC-TGGGTT-C--TGTATTTTATTG-CAAAAACTATATCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29607081 105 + 172585720 AGGAA-GAGTTGGCTGTGGCAGGAGGGGAGCAGAAGGGGGATGGCAATGCTATTTAGG-AATATTGAAA-TGC-TGGGTTCC--TGTATTTTATTG-CAAAAACTGTATCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29268322 105 - 170955103 AGGAA-GAGTTGGCTGTGGCAGGAGGGGAGCAGAAGGGGGATGGCAATGCTATTTAGG-AATACTGAAA-TGC-TGGGTTCC--TGTATTTTATTG-CAAAAACTGTATCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2278358 111 -   2996164 AGGAAGGAGTTGGCTGTGGCAGTGAGGAGGCAGAGGGGGATGGGCAATGCTATTTAGGCAATACTGAAATTGC-TGGGGTTCCGTGTATTTTATTGCCAAAGACTGTATCAT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28565935 105 -  71996105 AGGAA-GAGTTGGTTGTGGCAGGAGGGGAGCAGAAGGGGGATGGCAATGCTATTTAGG-AATATTGAAA-TGC-TGGGTTCC--TGTATTTTATTG-CAAAAACTGTATCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2296031 105 +   2316924 AGGAA-GAGTTGGCCGTGGCAGGAGGGGAGCAGAAGGGGGATGGCAATGCTATTTAGG-AATATTGAAA-TGC-TGGGTTCC--TGTATTTTATTG-CAAAAACTGTATCAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2135676 105 -   3067355 AGGAA-GAGTTGGCTGTGGCAGGAGGGGAGCAGAAGGGGGATGGCAATGCTATTTAGG-AATACTCAAA-TGC-TGGGTTCC--TGTATTTTATTG-CAAAAACTATATCAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171586184 105 - 171630274 AGGAA-AAGTTGGCTTTGGCAGGAAGGGAGCAAAAGGGGGATGGCAATGCTATTTAGG-AATATTGGAA-TGC-TGGGTGCC--TGTATTTTATTG-CCGAAACTATACCAT
i calJac3.chr4             I 5 I 269
s otoGar3.GL873742           1699009 106 -   2232465 AGGGA-GCGTTGGCTGTGGCAGGAAAAGAGCAGAAGGGGCACAGCAAAGCAATTTAGG-AATGTTTGAA-TGAGTGAGTTTT--TATGTCTCATAG-CAAAAACTGGATCAT
i otoGar3.GL873742         C 0 I 2
s dasNov3.JH570037            296062 101 -    859332 ---AA-GAATTGGCTGCGGCAGTAAGGAAGCAGAAGGGGCAT-GTAAAACAATTTAGG-AATATTTAAA-TGG-TGGGTCAC--TATGTCTTATAG-AAATAAGTATATAAT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=518715.000000
s hg38.chr6_GL000254v2_alt    438229 92 +   4827813 --AAAAGAGT-G-----TTTATCTTTCTCATGCAAGATTGGTAATGT-GCAAGAGAAAATAAGCAACTGAAAATCAAG-CTATCAAAGCATATTTGAATTTC
s panTro5.chr6              29419233 92 + 175400573 --AAAAGAGT-G-----TTTATCTTTCTCATGCAAGATTGGTAATGT-GCAAGAGAAAATAAGCAACTGAAAATCAAG-CTATCAAAGCATATTTGAATTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29660967 92 + 173848474 --AAAAGAGT-G-----TTTATCTTTCTCATGCAAGATTGGTAATGT-GCAAGAGAAAATAAGCAACTGAAAATCAAG-CTATCAAAGCATATTTGAATTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5445593 92 +   6154872 --AAAAGAGT-G-----TTTATCTTTCTCATGCAAGATTGGTAATGT-GCAAGAGAAAATAAGCAACTGAAAATCAAG-CTATCAAAGCATATTTGAATTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29607186 92 + 172585720 --AAAAGAGT-G-----TTTATCTTTCTCATGCAAGATTGGTAGTGT-GCAAGAGAAAATAAGCAACTGAAAATCAAA-CTATCAAAGCATATTTGAATTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29268427 92 - 170955103 --AAAAGAGT-G-----TTTATCTTTCTCATGCAAGATTGGTAGTGT-GCAAGAGAAAATAAGCAACTGAAAATCAAA-CTATCAAAGCATATTTGAATTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2278469 95 -   2996164 --AAAAGAGTGG-----TTTATCTTTCTCATGCAAGATTGGTAGTGTGGCAAGAGAAAATAAGCAACTGAAAATCAAAGCTATCAAAGCATATTTGAATTTC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28566040 87 -  71996105 --AAA--AGT-G-----TTTATCTTTCTCATGCAAGATTGGTAGTGT-GCAAGAGAAAATAAGCAACTGAAAATGAAA-CTATCAAAGCATATTTGAAT---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2296136 92 +   2316924 --AAAAGAGT-G-----TTTATCTTTCTCATGCAAGATTGGTAGTGT-GCAAGAGAAAATAAGCAACTGAAAATCAAA-CTATCAAAGCATATTTGAATTTC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2135781 92 -   3067355 --AAAAGAGT-G-----TTTATCTTTCTCATACAAGATTGGTAGTGT-GCAAGAGAAAATAAGCAACTGAAAATCAAA-CTATCAAAGCATATTTGAATTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171586558 92 - 171630274 --aaaaaaGT-G-----TTTATTTTTCTCATGAAAGATTGACAATGT-ACAAGAGAAAATAAGCAACTGAAAATTAAA-CTGTCAGAGCATATTTGAATTTC
i calJac3.chr4             I 269 C 0
s otoGar3.GL873742           1699117 97 -   2232465 --GAAAAACT-GCATCATATATCTTTCCCGTGAAAGATTTATAATGC-ACAAGAGAAAATAGGTAATTGAAAATCAAA-CTATCTGTGCAAATTTCAATTTC
i otoGar3.GL873742         I 2 I 280
s dasNov3.JH570037            296163 93 -    859332 AAAAGACAGT-A-----TTTGTCTTTCCCACAAAAGAATGGTCATAC-ACAA-ATAAAAGAGGCAACTAAAAACCAAA-CTATTGGCACATATATCAATTTC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=466254.000000
s hg38.chr6_GL000254v2_alt    438321 102 +   4827813 ---------TTC---ATTTTAAAAA---AATAA-----------------------CTACAAG-GTGAATTTT---C---TGGATTTTATAC-AATGTTCACGTATC--TT------TCTACTAATATTAGTTAATGTCTGTTCAGAAGCTCCATT
s panTro5.chr6              29419325 105 + 175400573 ---------TTCTTTATTTTAAAAA---AATAA-----------------------CTACAAG-GTGAATTTT---C---TGGATTTTATAC-AATGTTCACGTATC--TT------TCTACTAATATTAGTTAATGTCTGTTCAGAAGCTCCATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29661059 105 + 173848474 ---------TTCTTTATTTTAAAAA---AATAA-----------------------CTACAAG-GTGAATTTT---C---TGGATTTTATAC-AATGTTCACGTATC--TT------TCTACTAATATTAGTTAATGTCTGTTCAGAAGCTCCATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5445685 105 +   6154872 ---------TTCTTTATTTTAAAAA---AATAA-----------------------CTACAAG-GTGAATTTT---C---TGGATTTTATAC-AATGTTCACGTATC--TT------TCTACTAATATTAGTTAATGTCTGTTCAGAAGCTCCATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29607278 101 + 172585720 ---------TTCTTTATTTTTTAAA---AATAA-----------------------CTACAAG-GTGAATTTT---C---TGGATTTTATAC-AATGCTCATGTATC--TT------TCTACTAATA----TTAATGTCTGTTCAGAAGCTCCATT
i rheMac8.chr4             C 0 I 328
s macFas5.chr4              29268519 101 - 170955103 ---------TTTTTTATTTTTTAAA---AATAA-----------------------CTACAAG-GTGAATTTT---C---TGGATTTTATAC-AATGCTCATGTATC--TT------TCTACTAATA----TTAATGTCTGTTCAGAAGCTCCATT
i macFas5.chr4             C 0 I 328
s macNem1.NW_012011356v1     2278564 103 -   2996164 ---------TTTTTTATTTTTAAAA---AATAA------------------------TACAAGCGTGAATTTT---C---TGGATTTTGTACAAATGCTCATGTATC-TTT------TCTACTAATA----TTAATGTCTGTTCAGAAGCTCCATT
i macNem1.NW_012011356v1   C 0 I 332
s chlSab2.chr17             28566127 101 -  71996105 ---------TTCTTTATTTTTAAAA---AATAA-----------------------CTACAAG-GTGAATTTT---C---TGGATTTTATAC-AATGTTCATGTATC--TT------TCTACTAATA----TTAATGTCTGTTCAGAAGCTCCATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2296228 101 +   2316924 ---------TTCTTTATTTTTTAAA---AATAA-----------------------CTACAAG-GTGAATTTT---C---TGGATTTTATAC-AATGCTCATGTATC--TT------TCTACTAATA----TTAATGTCTGTTCAGAAGCTCCATT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2135873 124 -   3067355 ---------TTCTTTATTTTTAAAA---AATAACTACAAGGAAATAAAAAAAATAACTACAAG-GTGAATTTT---C---TGGATTTTATAC-AATATTCATGTATC--TT------TCTACTAATA----TTAATTTCTGTTCAGAAGCTCCATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171586650 110 - 171630274 ---------TTCTTTATTTTTTAAAAAGAATAA-----------------------CTACAAG-ATGAATTTT---C---TGGATTTTGTAC-ATTATTGACATATTGTTG------TCTACTAATATTAGTTCATGTCTACTCAGAAGCTCCATT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1699494 107 -   2232465 ------------TTTTTAACAAAAG---CATGA-----------------------CTACAAG-ACAAATTTGTCAT---TGGAGTTTATAC-AACGTTCCCATATC--TTTAATTATCTATTAATA----TTAATGTTTATTCAGAAGCTCCATT
i otoGar3.GL873742         I 280 C 0
s dasNov3.JH570037            296256  94 -    859332 TTGCCTTTATTTTTCTTTACAAAAG---AATAA-----------------------CTATAAG-ATGAAATTG---CTGTTGAATTTTATGA-TATAGCCACATATC--TT------TTTCTTA-------TTAGTTCCT----------------
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1139169.000000
s hg38.chr6_GL000254v2_alt    438423 223 +   4827813 AAAAATTGTGGAAAACCCAGAAAATACAAATT----ATAAATTGTGACTCAGAATTTAAAGTATAGTTCAGTTATTGGCCTAAAGCATATACAGTTTTGTAGAAACCATGTTTAAGTCTTC---TTGTCCTTGTCTAACAAACTTGT--TATACATTCTTTCAACTTCGCATACCACATTCAGACCT-CTCTTCACTGTTGTGCAT--CCAAACACTCTCC---ATTTCTCTCTTACC---
s panTro5.chr6              29419430 223 + 175400573 AAAAATTCTGGAAAACCtagaaaatacaaatt----ataaattgtgactcagaatttaaagtataGTTCAGTTATTGGCCTAAAGCATATACAGTTTTGTAGAAACCATGTTTAAGTCTTC---TTGTCCTTGTCTAACAAACTTGT--TATACATTCTTTCAACTTCGCATACCACATTCAGACCT-CTCTTCACTGTTGTGCAT--CCAAACACTCTCC---ATTTCTCTCTTACC---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29661164 223 + 173848474 AAAAATTGTGGAAAACCtagaaaatacaaatt----ataaattgtgactcagaatttaaagtataGTTCAGTTATTGGCCTAAAGCATATACAGTTTTGTAGAAACCATGTTTAAGTCTTC---TTGTCCTTGTCTAACAAACTTGT--TATACATTCTTTCAACTTCGCATACCACATTCAGACCT-CTCTTCACTGTTGTGCAT--CCAAACACTCTCC---ATTTCTCTCTTACC---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5445790 223 +   6154872 AAAAATTGTGGAAAACCCAGAAAATACAAATT----ATAAATTGTGATTCAGAATTTAAAGTATAGTTCAGTTATTGGCCTAAAGCATATACAGTTTTGTAGAAACCATGTTTAAGTCTTC---TTGTCCTTATCTAACAAACTTGT--TATACATTCTTTCAACTTCGCATACCACATTCAGACCT-CTCTTCACTGTTGTGCAT--CCAAACACTCTCC---ATTTCTCTCTTACC---
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29607707 224 + 172585720 aaaaaTTGTAGAAACCCCAGAAAATACAAATT----ATAAATTGTGACTCAGAATTTAAAGTATAGTTCAGTTATTGGCCTAAAGCATATAAAATTTTGTAGAAACCATGTTTAAGTCTTC---TTGTCCCTGTCAAACAATCCTGT--TATACATTCTTTCAACTTCAACTACCACGTTCAGACCTCCTCTTCACTGTTGTGCAT--CCAAACACTGTTC---CTTTCTCTCTTACC---
i rheMac8.chr4             I 328 C 0
s macFas5.chr4              29268948 224 - 170955103 aaaaaTTGTAGAAACCCCAGAAAATACAAATT----ATAAATTGTGACTCAGAATTTAAAGTATAGTTCAGTTATTGGCCTAAAGCATATAAAATTTTGTAGAAACCATGTTTAAGTCTTC---TTGTCCCTGTCAAACAATCCTGT--TATACATTCTTTCAACTTCAACTACCACATTCAGACCTCCTCTTCACTGTTGTGCAT--CCAAACACTGTCC---CTTTCTCTCTTACC---
i macFas5.chr4             I 328 C 0
s macNem1.NW_012011356v1     2278999 224 -   2996164 aaaaaTTGTAGAAACCCCAGAAAATACAAATT----ATAAATTGTGACTCAGAATTTAAAGTATAGTTCAGTTATTGGCCTAAAGCATATAAAATTTTGTAGAAACCATGTTTAAGTCTTC---TTGTCCCTGTCAAACAATCCTGT--TATACATTCTTTCAACTTCAAATACCACATTCAGACCTCCTCTTCACTGTTGTGCAT--CCAAACACTGTCC---CTTTCTCTCTTACC---
i macNem1.NW_012011356v1   I 332 C 0
s chlSab2.chr17             28566228 224 -  71996105 AAAAATTGTAGAAACCCCAGAAAATACAAATT----ATAAATTGTGACTCAGAATTTAAAGTATAGTTCAGTTATTGGCCTAGAGCATATAAAATTTTGTAGAAACCATGTTTAAGTCTTC---TTATCCCTGTCAAACAATCCTGT--TATACATTCTTTCAACTTCAAATACCACATTCAGACCTCCTCTTCTCTGTTGTGCAT--CCAAACACTGTCC---CTTTCTCTCTTACC---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2296329 224 +   2316924 AAAAATTGTAGAAACCCCAGAAAATACAAATT----ATAAATTGTGACTCAGAATTTAAAGTATAGTTCAGTTATTGGCCTAAAGCATATAAAATTTTGTAGAAACCATGTTTAAGTCTTC---TTGTCCCTGTCAAACAATCCTGT--TATACATTCTTTCAACTTCAAATACCACATTCAGACCTCCTCTTCACTGTTGTGCAT--CCAGACACTGTCC---CTTTCTCTCTTACC---
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2135997 224 -   3067355 AAAAATTGTAGAAACCCCAGAAAATACAAATT----ATAAATTGTGACTCAGAATTTAAAGTATAGTTCAGCTATTGGCCTAAAGCATATAAAATTTTGTAGAAACCATGTTTAAGTCTTC---TTGTCCCTGTCAAACAATCCTGT--TATACATTCTTTCAACTTCAAATACCACATTCAGACCTCCTTTTCACTGTTGTGCAT--CCAAACACTGTCC---CTTTCTCTCTTACC---
i colAng1.NW_012115566v1   C 0 I 1466
s calJac3.chr4             171586760 219 - 171630274 AAAAATTGTATAAAACCCAGAATATACAAATT----ACAAATTGTGACTCAGAATTTAAAATATACTTCA-TTATTGACCTAAAGCATATAAGAGTTTGTGGACACTGTGTTTAAGTCTTC---TT---TTTGTCTAACAATCCTGT--TATACAGTCTTTCAACTTCAGATACCACATTCAGAGCTCCTCCTCACTGCTGTG-AT--CCGTACACTCTCC---CTTTCTCTCTTACC---
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1699601 225 -   2232465 ATAAATTATAGAAAACTAAAAACATGTAAGTT----ATAAACTATGACTCAGAATTTAAATTCTATAT--GTTATTATCTTAAATCATATGACG-TTTGTAGAAACTATGTTCAAAAATCCCAGTTTTCCAGTTCTTAGAGCCCTGTGATATATATTTTTTCAATTTCAAGTATCACAATTAGAGTTCCTTTCCTCTTTTCTTCAT--TCAAATACCCTCATAGATTTTTCCCC-------
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            296350 206 -    859332 --AAACTGTAGAAAAACCAAAACTTATGAAGTAATAATAAATTATGACCCAGAACATAAATGATGTCTCAGTTATTGTCCTAGATCAGATCAAATTGTGTGGAAACTCTTTTCAAG----C---------------------CCTGT--GAAAAACTCTT--AACCCCAAGTACCACAATCAGAGTT-CTTCTCTTTCTTCTCCACTGCAAAACAGCTTCT---CTTCCTCTCTTGTTCCC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1293464.000000
s hg38.chr6_GL000254v2_alt    438646 270 +   4827813 AACCTATGTTTTTGTTAGACTCTG-TAA----TCTTTATGTCTTCCAGTAA-------TATAGTCTCATTTACCTTTGGAAGCATACTATCACCGATCACTCTATT-----------TTGCTGTA-T--------TAA-----------TCAGCTTTGTGTATATTGTGAATTTTTATAAGTTGG-----TG--TGTGCGTGCATATT-----CTCTTTAAACTTTGATTTGTGCATTATTTTA--T----TTGTCTAGAAATAAACTGCTAGCA----TAAA-T-------AGCATTTGATTCTTTCTATAATCATATTCAATT-------ATTTCTTTTCA-----G------TTAATA
s panTro5.chr6              29419653 270 + 175400573 AACCTATGTTTTTGTTAGACTCTG-TAA----TCTTTATGTCTTCCAGTAA-------TATAGTCTCATTTACCTTTGGAAGCATTCTATCACCGATCACTCTATT-----------TTGCTGTA-T--------TAA-----------TCAGCTTTGTGTATATTGTGAATTTTTATAAGTTGG-----TG--TGTGCGTGCATATT-----CTCTTTAAACTTTCATTTGTGCATTATTTTA--T----TTGTCTAGAAATAAACTGCTAGCA----TAAA-T-------AGCATTTGATTCTTTCTATAATCATATTCAATT-------ATTTCTTTTCA-----G------TTAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29661387 270 + 173848474 AACCTATGTTTTTGTTAGACTCTG-TAA----TCTTTATGTCTTCCAGTAA-------TATAGTCTCATTTACCTTTGGAAGCATTCTATCACCGATCACTCTATT-----------TTGCTGTA-T--------TAA-----------TCAGCTTTGTGTATATTGTGAATTTTTATAAGTTGG-----TG--TGTGCGTGCATATT-----CTCTTTAAACTTTCATTTGTGCATTATTTTA--T----TTGTCTAGAAATAAACTGCTAGCA----TAAA-T-------AGCATTTGATTCTTTCTATAATCATATTCAATT-------ATTTCTTTTCA-----G------TTAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5446013 270 +   6154872 AACCTATGTTTTTGTTAGACTCTG-TAA----TCTTTATGTCTTCCAGTAA-------TATAGTCTCATTTACCTTTGGAAGCATTCTATCACCGATCACTCTATT-----------TTGCTGTA-T--------TAA-----------TCAGCTTTGTGTATATTGTGAATTTTTATAAGTTGG-----TG--TGTGTGTGCATATT-----CTCTTTAAACTTTCATTTGTGCATTATTTTA--T----TTGTCCAGAAATAAACTGCTAGCA----TAAA-T-------AGCATTTGATTCTTTCTATAATCATATTCAATT-------ATTTCTTTTCA-----G------TTAATA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29607931 267 + 172585720 AACCTATGTTTTTGTCAGACTCTG-TAA----TCTTTATATCTTCCAGTAA-------TATAGTCTCATTCACCTTTGGAAGCATTCTATCACCGATTACTCTATT-----------TTGCTTTA-T--------TAA-----------TCGGCTTTGTGTATATTGTGAATTTTTATAAGTTGG-----TG--TGTTTGTGCATATT-----CTGTTTAAACTTTCATTTTTGTA-----TTA--T----TTGTCTAGAAATAAACTGCTAGCATAAGTAAA-T-------AGCAGTTAATTTTTTCTATAATC--ATTCAATT-------ATTTCTTTTCA-----G------TTAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29269172 267 - 170955103 AACCTATGTTTTTGTCAGACTCTG-TAA----TCTTTATATCTTCCAGTAA-------TATAGTCTCATTCACCTTTGGAAGCATTCTATCACCGATTACTCTATT-----------TTGCTTTA-T--------TAA-----------TCGGCTTTGTGTATATTGTGAATTTTTATAAGTTGG-----TG--TGTTTGTGCATATT-----CTGTTTAAACTTTCATTTTTGTA-----TTA--T----TTGTCTAGAAATAAACTGCTAGCATAAGTAAA-T-------AGCAGTTAATTTTTTCTATAATC--ATTCAATT-------ATTTCTTTTCA-----G------TTAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2279223 267 -   2996164 AACCTATGTTTTTGTCAGACTCTG-TAA----TCTTTATATCTTCCAGTAA-------TATAGTCTCATTCACCTTTGGAAGCATTCTATCACCGATTACTCTATT-----------TTGCTTTA-T--------TAA-----------TCGGCTTTGTGTATATTGTGAATTTTTATAAGTTGG-----TG--TGTTTGTGCATATT-----CTGTTTAAACTTTCATTTTTGTA-----TTA--T----TTGTCTAGAAATAAACTGCTAGCATAAGTAAA-T-------AGCAGTTAATTTTTTCTATAATC--ATTCAATT-------ATTTCTTTTCA-----G------TTAATA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28566452 263 -  71996105 AACCTATGTTTTTGTTAGACTCTG-TAA----TCTTTATATCTTCCAGTAA-------TACAGTTTCATTTACCTTTGGAAGCATTCTATCACCGATTACTCTGTT-----------TTGTTTTA-T--------TAA-----------TCAGTTTTGTGTATATTGTGAATTTTTATAAGCTGG-------------TGTGCCTATT-----CTGTTTAAACTTTCATTTGTGTA-----TTA--T----TTGTCTAGAAATAAACTGCTAGCATAAATAAA-T-------GGCAGTTAATTTTTTCTATAATCATATTCAATT-------ATTTCTTTTCA-----G------TTAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2296553 266 +   2316924 AACCTATGTTTTTGTCAGACTCTG-TAA----TCTTTATATCTTCCAGTAA-------TATAGTCTCATTCACCTTTGGAAGCATTCTATCACCGATTACTCTATT-----------TTGCTTTA-T--------TAA-----------TCGGCTTTGTGTATATTGTGAATTTTTATAAGTTGG-----TG--TGTTTGTGCATATT-----CTGTTTAAACTTTCATTTTTGTA-----TTA--T----TTGTCTAGAAATAAACTGCTAGCATAAATAAA-T-------AGCAGTTAA-TTTTTCTATAATC--ATTCAATT-------ATTTCTTTTCA-----G------TTAATA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2137687 269 -   3067355 AACCTATGTTTTTGGTAGACTCTG-TAA----TCTTTATATCTTCCAGTAA-------TATAGTCTCATTTACCTTTGGAAGCATTCTATCACCGATTACTCTATT-----------TTGCTTTA-T--------TAA-----------TCGGCTTTGTGTATATTGTGAATTTTTATAAGTTGG-----TG--TGTTTGTGCATATT-----CTGTTTAAACTTTCATTTGTGTA-----TTA--T----TTGTCTAGAAATAAACTGCTAGCATAAATAAA-T-------AGCAGGTAATTTTTTCTATAATCATATTCAATT-------ATTTCTTTTCA-----G------TTAATG
i colAng1.NW_012115566v1   I 1466 C 0
s calJac3.chr4             171586979 285 - 171630274 CTCCTATGTCTTTGTTAGACTCT----A----TTTTTTTGTGTTTCAATAA---TAATTATATTCCTATTTAACTTTGGAAGCATTCTATTACTGACATCTCTATT-----------CCATTTTACC--------TTA-----------TCAGCTTTGCTTATATTGTGAATTTTTATAAGTTGG-----TGCATGTATGTGCATATG----ACTGTTTAAACCTTCATTTGCACATTATTTTA--T----TTGTCTAGAAATGAACTGCTAGCATAAATGAA-T-------AGCATTGAGTTCTTTCTATAATCATACTGAATT-------ATTTATTTTCA-----GTCAATATTAACA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1699826 290 -   2232465 TTCCTACATTTTTCTTAGATTCTC-TAATTCTTTTTTTTGTCTTCC---AA-------TATATTCTCACTTACTTTTGAAAACATTTCATCACTGATTTCTCTAAT-----------CTACTTTA-TTTCTTTGCTAA-----------TCAGCCTTATTCATTTTGTGAG-TATTATGAGTTGGGGGTGTG--TGCATGTTCATGTG-----TTATTTATACTTACATTTGCATG-----TTATTT----TTATCTAGAAATAAGCTACTAGCACACATAAACT-------AACATTTTATTCTTTCTATAATCATATTCAAGT-------AATATTTTTGGCTGATA------TTAACA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            296556 319 -    859332 TTCCTACGTCTTTATTTCATTCTGTTTA----TGTTTTTATTTGTCTTCAAATTTAGTTATATTTTTACTCCCCTTTGGAAACATTCTATCACTGAATTCCCCATTGATTTCACGTCTCTCCTTA-T--------CAGAACTAAGACATTCAGTTTTGCTCATACTGTGAATATTCCTAAATTGG-----TGATTGTGTGATCATGTTTGTGTTTGCTTACACCTCCATTTGCTTG-----TTA--TGTTCTTGTCTAGAAATAAA---CTATCGTAGATAAA-TGAATTAGAATATTTTGTTCTTTCTATAATTGTATCAAATTGGAGTTGAATTCTTT--A-----C------CCAATA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138168 1234 +  26524999 T
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=23270.000000
s hg38.chr6_GL000254v2_alt    438916 3 +   4827813 TTT
s panTro5.chr6              29419923 3 + 175400573 TTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29661657 3 + 173848474 TTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5446283 3 +   6154872 TTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29608198 3 + 172585720 TTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29269439 3 - 170955103 TTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2279490 3 -   2996164 TTT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28566715 3 -  71996105 TTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2296819 3 +   2316924 TTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2137956 3 -   3067355 TTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171587264 3 - 171630274 TTT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1700116 3 -   2232465 TTT
i otoGar3.GL873742         C 0 I 193
s canFam3.chr35             26136934 3 +  26524999 TTT
i canFam3.chr35            T 1234 C 0
s dasNov3.JH570037            296875 2 -    859332 -TT
i dasNov3.JH570037         C 0 C 0
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=2207354.000000
s hg38.chr6_GL000254v2_alt    438919 417 +   4827813 TAAAG-TGACTATCTAATTGCTTTTT---------------A--ATATGGGAAATTCCTATCTATAA----GTAAGATC-------AGTAAGACTGCTG-TTATTCCTTTCTCTGTAATTGCAAAATTGGAAATAGCCTGAA------AA-T-----ATAAAAATAAT--------T-----------TGA-CTTTTT---AAAGTAAAA-AATCATTTTTCATAAATATTGTGTTCCTGATTAT----GGACTATC-TTAGTCTTCATTAATCCAAATGTTAATTCAGGGATGTATAT-AAAGAACTCAGTAACTTGAGAAGCTATTG-CTTGTATCTGTAGCTGGATAAATATCTCAATGAAGCACATAAAGGGAACTGTATAAAAATTCTACTACCATTATGGTGCACACTCTCTGGAAGTGGGATA------CTTTTGTCTTCAATCTGTTTGCAAGTGAGCGGTTGACAATGCATGGACAGACTTTGAGTT
s panTro5.chr6              29419926 417 + 175400573 TAAAG-TGACTATCTAATTGCTTTTT---------------A--ATATGGGAAATTCCTATCTATAA----GTAAGATC-------AGTAAGACTGCTG-TTATTCCTTTCTCTGTAATTGCAAAATTGGAAATAGCCTGAA------AA-T-----ATAAAAATAAT--------T-----------TAA-CTTTTT---AAAGTAAAA-AATCATTTTTCATAAATATTGTGTTCCTGATTAT----GGACTATC-TTAGTCTTCATTAATCCAAATGTTAATTCAGGGATGTATAT-AAAGAACTCAGTAACTTGAGAAGCTATTG-CTTGTATCTGTAGCTGGATAAATATCTCAATGAAGCATATAAAGGGAACTGTATAAAAATTCTACTACCATTATGGTGCACACTCTCTGGAAGTGGGATG------CTTTTGTCTTCAATCTGTTTGCAAGTGAGCAGTTGACAATGCATGGACAGACTTTGAGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29661660 417 + 173848474 TAAAG-TGACTATCTAATTGCTTTTT---------------A--ATATGGGAAATTCCTATCTATAA----GTAAGATC-------AGTAAGACTGCTG-TTATTCCTTTCTCTGTAATTGCAAAATTGGAAATAGCCTGAA------AA-T-----ATAAAAATAAT--------T-----------TAA-CTTTTT---AAAGTAAAA-AATCATTTTTCATAAATATTGTGTTCCTGATTAT----GGACTATC-TTAGTCTTCATTAATCCAAATGTTAATTCAGGGATGTATAT-AAAGAACTCAGTAACTTGAGAAGCTATTG-CTTGTATCTGTAGCTGGATAAATATCTCAATGAAGCATATAAAGGGAACTGTATAAAAATTCTACTACCATTATGGTGCACACTCTCTGGAAGTGGGATG------CTTTTGTCTTCAATCTGTTTGCAAGTGAGCAGTTGACAATGCATGGACAGACTTTGAGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5446286 416 +   6154872 TAAAG-TGACTATCTAATTGCTTTTT---------------A--ATATGGGAAATTCCTATCTATAA----GTAAGATC-------AGTAAGACTGCTG-TTATTCCTTTCTCTGTAATTGCAAAATTGGAAATAGCCTGAA------AA-T-----ATAAAAATAAT--------T-----------TAA-CTTTTT---AAAGTAAAA-AATCATTTTTCATAAATATTGTGTTCCTGATTAT----GGACTATC-TTAGTCTTCATTAATCCAAATGTTAATTCAGGGATGTATAT-AAAGAACTCAGTAACTTGAGAAGCTATTG-CTTGTATCTGTAGCTGGATAAATATCTCAATGAAGCATGTAAAGGGAACTGTATAAAAATTCTACTACCATTA-GGTGCACACTCTCTGGAAGTGGGATA------CTTTTGTCTTCAATCTGTTTGCAAGTGAGCGGTTGACAATGCATGGACAGACTTTGAGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29608201 418 + 172585720 TAAAG-TGACTGCCTAATTGCTTTTT---------------A--ATATGGGAAATTCCTATCTGTAA----GTAAGATT-------ATTAAGACTGCTG-TTATTCCTTTCTCTGTAATTGCAAAATTGGAAATAGCCTGAA------AA-T-----ATAAAAATAATC----AAAT-----------TAA-CTTTTT---AAAGTAAAA-AATTATTTTTCATAGTTATTGTGTTCCTGATTAT----AGAATATC-ATAGTCTTCATTAATCCAAATATTAACTCAGGGATGCATATAAAAGAACTCAGCAACTTGAGAAGCTATTG-CTTGTATCCACAGCTGGATAAATATCTCAATGAAGCATGTAAAGGGAACTGTATAAAAATTCTACTGACATTATGATGCATACTGTCTAGAAGTGGGA----------TTTGTGCTCAGTCTGTTTGCAAGTGAGCAATTGACAATGCATGGACAGACTTTGAGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29269442 418 - 170955103 TAAAG-TGACTGCCTAATTGCTTTTT---------------A--ATATGGGAAATTCCTATCTGTAA----GTAAGATT-------ATTAAGACTGCTG-TTATTCCTTTCTCTGTAATTGCAAAATTGGAAATAGCCTGAA------AA-T-----ATAAAAATAATC----AAAT-----------TAA-CTTTTT---AAAGTAAAA-GATTATTTTTCATAGTTATTGTGTTCCTGATTAT----AGAATATC-ATAGTCTTCATTAATCCAAATATTAACTCAGGGATGCATATAAAAGAACTCAGCAACTTGAGAAGCTATTG-CTTGTATCCACAGCTGGATAAATATCTCAATGAAGCATGTAAAGGGAACTGTATAAAAATTCTACTGACATTATGATGCATACTGTCTAGAAGTGGGA----------TTTGTGCTCAGTCTGTTTGCAAGTGAGCAATTGACAATGCATGGACAGACTTTGAGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2279493 418 -   2996164 TAAAG-TGACTGCCTAATTGCTTTTT---------------A--ATATGGGAAATTCCTATCTGTAA----GTAAGATT-------ATTAAGACTGCTG-TTATTCCTTTCTCTGTAATTGCAAAATTGGAAATAGCCTGAA------AA-T-----ATAAAAATAATC----AAAT-----------TAA-CTTTTT---AAAGTAAAA-AATTATTTTTCATAGTTATTGTGTTCCTGATTAT----AGAATATC-ATAGTCTTCATTAATCCAAATATTAACTCAGGGATGCATATAAAAGAACTCAGCAACTTGAGAAGCTATTG-CTTGTATCCACAGCTGGATAAATATCTCAATGAAGCATGTAAAGGGAACTGTATAAAAATTCTACTGACATGATGATGCATACTGTCTAGAAGTGGGA----------TGTGTGCTCAGTCTGTTTGCAAGTGAGCAATTGACAATGCATGGACAGACTTTGAGTT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28566718 415 -  71996105 TAAAG-TGACTGCCTAATTGCTTTTT---------------A--ATGTGGGAAATTCCTATCTGTAA----GTAAGATT-------ATTAAGACTGCTC-TTATTCCTTTTTCTGTAATTGCAAAATTGGAAATAGCCTGAA------AA-T-----ATAAAAATAATC----AAAT-----------TAA-CTTTTT---AAAGTAAAA-AATTATTTTTCATAAATATTGTGTTCCTGATTAT----GGAATATC-ATAGTCTTCATTAATCCAAATGTTAACTCAGGAATGTATACAAAAGAACTCAGTAACTCGAGAAGCTATTG-CTTGTATCCATAGCTGGATAAATATCTCAATGAAGCATGTAAAGGGAACTGTATAAAAATTCTACTGAC---ATGATGCACACTGTCTGGAAGTGGGA----------TTTGTCTTCAATCTGTTTGCAAGTGAGCAATTGACAATGCATGGGCAGACTTTGAGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2296822 416 +   2316924 TAAAG-TGACTGCCTAATTGCTTTTT---------------A--GTATGGGAAATTCCTATCTGTAA----GTAAGATT-------ATTAAGACTGCTG-TTATTCCTTTCTCTGTAATTGCAAAATTGGAAATAGCCTGAA------AA-T-----ATAAAAATAATC----AAAT-----------TAA-CTTTTT---AAAGTAAAA-AATTATTTTCCATAGTTATTGTGTTCCTGATTAT----GGAATATC-ATAGTCTTCATTAATCCAAATGTTAACTCAGGGATGTATATAAAAGAACTCAGTAACTTGAGAAGCTATTG-CTTGTATCCACAGCTGGATAAATATCTCAATGAAGCATGTAAAGGGAACTGTATAAAAATTCTACTGACATTATGATGCATACTGTCTGGAAGTGGGA----------TTTGTGCTCAGTCTGTTTGCTAGTGAGCTATTGACAATGCATGGACAGAC--TGAGTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2137959 418 -   3067355 TAAAG-TGACTGCCTAATTGCTTTTT---------------A--ATATGGAAAATTCCTATCTATAA----GTAAGATT-------ATTAAGACTGCTG-TTATTCCTTTCTCTGTAATTGCAAAATTGGAAATAGCCTGAA------AA-T-----ATAAAAATAATC----AAAT-----------TAA-CTTTTT---AAAGTAAAA-AATTATTTTTCATAAATATTGTGTTCCTGATTAT----GGAATATC-ATAGTCTTCATTAATCCAAATGTTAACTCAGGGATGTATATAAAAGAACTCAGTAACTTGAGAAGCTATTG-CTTGTATCCATAGCTGGATAAATATCTCAATGAAGCATGTAAAGGGAACTGTATAAAAATTCTACTGACATTATGATGCATACTGTCTGGAAGTGGGA----------TTTGTCTTCAATCTGTTTGCAAGTGAGCAATTGACAATGCATGGACAGACTTTGAGTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171587267 415 - 171630274 TAAAG-TGACTACCTAATTACTTTTT---------------A--ACATGGGAAATTTCTATCTGTAA----GT-AGATT-------ATGAAGACTGTAG-TTATTCCTTTCTCTGTAACTGCAAATTTGGAAATAGCCTGaa------aatt-----aaaaaaaaaatc----aatt-----------taa-cttttt---aaaataaaa-aaattattttCATAAATGTTGTTTTTCTGCTGAT----AGAATATC-TTAGTCTTCATTTATCCAAATGTTAACTCAGGGATGTATA--AAAGAACTCAGCAACTTGAAAAGCTATTG-GTTGTATCCACAGCTGGACAAATATCTCGAGGAAGCTTAAAAAGGAAACTGTATAAAAATTATACTGCCA-----GTAAACACTATGAGGAAGTGGGATA------CTTTTTCCTCCAATCTGTTTGCAAGTGAGTGGTTGACAATGCATGGACAGGCTTTGAGTT
i calJac3.chr4             C 0 I 303
s otoGar3.GL873742           1700312 418 -   2232465 TAAAA-TTACTACTGTATTGCTTTTT---------------A--TTATGTGGGAAACTTATCTACACCACTGTAAGATTATGTAGGATTAAGATTGCAGTTTATTTCTTTCTCTGTTACTGCAAAATTGAAAATAGCCTGAA------AA-TGCAGGAAAAAAGGAATA----AATT-----------TAAGGTTTTT---TATAAAAAA-AAGTATTTTAAATGAAAATTGCCTTTCTGGTTAT----GAAATATC-TTAGTTTTTGTTTATCCAAA-GCTAACATAGGAATGTATAA-AAAGAGGTCAATCACTTGAGAAGTTATTG-ATTGTATCTGTAACAGGGCAAATATCTGAAGGAAACATAAAAAGAAAAC----TAAAAATTCTACTGCC-TTGTGGCAT-----------AAGTGGAACA------CATTTTCCCTGAATCTGTTTGCAAATG----TTTGACAATGCATGGGAAGCCTTTGAGTT
i otoGar3.GL873742         I 193 C 0
s canFam3.chr35             26136937 424 +  26524999 TAAAGTTGTTTATTGAGTTGTTTTTC---------------ATCTCATAGTAAACTCTCATTTATAT----GTAAGATT-------ATTGAGGCTAGAG-ATACT-CTTTCTCTGTAACCAGAAAACTG-AAATAACCCGAAATATGTAA-C-----ATAGGAATAAATTGAAAGAT-----------TTG-TTTTTTGTAAAAATAAAACGGTTATTTTTCATGAAAATTG---TCTTGGCTAT----GGAATGTA-ATCTTCAATATTTATCCAAATACCAACTTGGGGATGCATGA-AAAGAACTCATTTTCTTGAGAAGTTATTGATTTGTATTCACAGCAGGAAAAATATTTGAATGAAACATAAAAATAAAA--GTATAAAAATGTTACTATCATAA----GAGCAGTATTTGGAAATGTTGTA------AGTCTTTCC-CAGTCTACTGGTCAGGGA---TTTGGAAATGAGTGGGCACCCTTTGAGTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH570037            296877 408 -    859332 -AAGG-TA-----TTAATTACTATTTTCATGTTAAACATGAA--ACATAATAAACTCTCAACTATGT----GTACAATT-------ATAAAGACTGCAA-TTCTTCTTTTCTCTGTTAC--CAAA-----AAATAGCCTGAA------AA-T-----GTATAAAAGGG-----AAGTAGATAGAGTGGTAG-GTTTTT---GTAAAAAAT-ATTATTTTTTCATGAAAATTTTCCCTTTTGTCTTGTTAGGAATATCTTTAATCTTCATTTATCCAAATGCCAACTTAGAGAGA------AAAGAACTCAGTCATTTAAGAGGTTATTG-ATTGTATCTAC--------AAATATCTGAATGAAACA-AAAAAGAAAAC--TATAAAAGTTTTGCTGCCATCATAGCATACAGAAT-TATATGTGGGAGAGCATACAGTTTTCCCCCGATCAGTTGGCGAG-------------------GGGAAACCTTTGCGTT
i dasNov3.JH570037         C 0 C 0
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=232361.000000
s hg38.chr6_GL000254v2_alt    439336 45 +   4827813 TATGTGG--TTCTTTCTTTAGGTATAAG--AAAAAGATGAATGATGATT
s panTro5.chr6              29420343 45 + 175400573 TATGTGG--TTCTTTCTTTAGGTATAAG--AAAAAGATGAATGATGATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29662077 40 + 173848474 TATGTG------TCTTCTTAGGTATAAG---AAAAGATGAATGATGATT
i panPan2.chr6             C 0 T 9726
s gorGor5.CYUI01015250v1     5446702 45 +   6154872 TATGTGG--TTCTTTCTTTAGGTATAAG--AAAAAGATGAATGATGATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29608619 45 + 172585720 TATGTGA--TTCTTTCTTTAGGTACAAG--AAAAAAATGAATGATGATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29269860 45 - 170955103 TATGTGA--TTCTTTCTTTAGGTACAAG--AAAAAAATGAATGATGATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2279911 45 -   2996164 TATGTGA--TTCTTTCTTTAGGTACAAG--AAAAAAATGAATGATGATG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28567133 45 -  71996105 TATATGA--TTCTTTCTTTAGGTACAAG--AAAAAAATGAATGATGATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2297238 45 +   2316924 TATGTGA--TTCTTTCTTTAGGTACAAG--AAAAAAATGAATGATGGTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2138377 45 -   3067355 TATGTGA--TTCTTTCTTTAGGTACAAG--AAAAAAATGAATGATGATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171587985 45 - 171630274 TATGTGA--TTCTTTCTTTAGGTGTAAG--GGAAAAATGAATGATGATG
i calJac3.chr4             I 303 C 0
s otoGar3.GL873742           1700730 39 -   2232465 TATGTAA--TTGATTCTTCAAGTACAGC--AGAAAA---AATGATG---
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26137361 45 +  26524999 --TATGA--CTCTTCCTTCAGGTACAGGGGGAAAAAAAGAATGATGAGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH570037            297285 42 -    859332 TATGTGATTTTTTTTCTTCAGTTATCAG-----GAAATGAGTGATGG--
i dasNov3.JH570037         C 0 C 0
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1594838.000000
s hg38.chr6_GL000254v2_alt    439381 216 +   4827813 AAAAAAAATGCAAGTTCGGAAGACTTCTTT-ATTCTACTTGGATTTTCTAATTGGCCTCAGCTGGAAGTAGTTCTCTTTGTGGTTATCTTGATCTTCTACCTGATGACACTGACAGGAAACCTGTTCATCATCATCCTGTCATACGTGGACTCCCATCTCC-ACACACCAATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATCTCTGCTACACC
s panTro5.chr6              29420388 216 + 175400573 AAAAAAAATGCAAGTTCGGAAGACTTCTTT-ATTCTACTTGGATTTTCTAATTGGCCTCAGCTGGAAGTAGTTCTCTTTGTGGTTATCTTGATCTTCTACCTGATGACACTGACAGGAAACCTGTTCATCATCATCCTGTCATACGTGGACTCCCATCTCC-ACACACCAATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATCTCTGCTACACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29652391 217 + 173848474 AAAAAAAATGCAAGTTCGGAAGACTTCTTTAATTCTACTTGGATTTTCTAATTGGCCTCAGCTGGAAGTAGTTCTCTTTGTGGTTATCTTGATCTTCTACCTGATGACACTGACAGGAAACCTGTTCATCATCATCCTGTCATACGTGGACTCCCATCTCC-ACACACCAATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATCTCTGCTACACC
i panPan2.chr6             T 9726 C 0
s gorGor5.CYUI01015250v1     5446747 216 +   6154872 AAAAAAAATGCAAGTTCGGAAGACTTCTTT-ATTCTACTTGGATTTTCTAATTGGCCTCAGCTGGAAGTAGTTCTCTTTGTGGTTATCTTGATCTTCTACCTGATGACACTGACAGGAAACCTGTTCATCATCATCCTGTCATACGTGGACTCCCATCTCC-ACACACCAATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATCTCTGCTACACC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29608664 216 + 172585720 GAAAAAAACATAAGTTCTGAAGACTTCTTT-ATTCTACTTGGATTTTCTAATTGGCCTCATCTGGAAGTAGTTCTGTTTGTGGTTATCTTGATCTTCTACCTAATGACACTGACAGGAAACCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCC-ACACTCCCATGTACTTCTTCCTTTCAAACCTCTCGTTTCTGGATATCTGCTACACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29269905 216 - 170955103 GAAAAAAACATAAGTTCTGAAGACTTCTTT-ATTCTACTTGGATTTTCTAATTGGCCTCATCTGGAAGTAGTTCTGTTTGTGGTTATCTTGATCTTCTACCTAATGACACTGACAGGAAACCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCC-ACACTCCCATGTACTTCTTCCTTTCGAACCTCTCGTTTCTGGATCTCTGCTACACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2279956 216 -   2996164 GAAAAAAACATAAGTTCTGAAGACTTCTTT-ATTCTACTTGGATTTTCTAATTGGCCTCATCTGGAAGTAGTTCTGTTTGTGGTTATCTTGATCTTCTACCTAATGACACTGACAGGAAACCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCC-ACACTCCCATGTACTTCTTCCTTTCGAACCTCTCGTTTCTGGATCTCTGCTACACC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28567178 216 -  71996105 GAAAAAAACGCAAGTTCTGAAGACTTCTTT-ATTCTACTTGGATTTTCTAATTGGCCTCATCTGGAAGTAGTTCTCTTTGTGGTTATCTTGATCTTCTACCTAATGACACTGACAGGAAACCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCC-ACACTCCCATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATCTCTGCTACACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2297283 216 +   2316924 GAAAAAAACACAAGTTCTGAAGACTTCTTT-ATTCTACTTGGATTTTCTAATTGGCCTCATCTGGAAGTAGTTCTGTTTGTGGTTATCTTGATCTTCTACCTAATGACACTGACAGGAAACCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCC-ACACTCCCATGTACTTCTTCCTTTCAAACCTTTCATTTCTGGATATCTGCTACACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2138422 216 -   3067355 GAAAAAAACGCAAGTTCTGAAAACTTCTTT-ATTCTACTTGGATTTTCTAATTGGCCTCATCTGGAAGTAGTTCTGTTTGTGGTTATCTTGATCTTCTACCTAATGACACTGACAGGAAACCTGTTCATCATCATCCTGTCATACCTGGACTCCCATCTCC-ACACTCCAATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATCTCTGCTACACC
i colAng1.NW_012115566v1   C 0 I 657
s calJac3.chr4             171588030 216 - 171630274 AAAAAAAATGCAAGTTCTGTAGACTTCTTT-ACTCTACTTGGATTTTCTAATTGGCCTCATCTGGAAGCAGTTCTCTTTGTGGTTATCTTGATCTTCTACTTGATGACACTGATAGGAAACCTGTTCATCACCATCCTGTCATACCTGGACTCCCATCTCC-ACACTCCCATGTACTTCTTCCTTTCAGACCTTTCATTTCTGGATCTGTGCTACACC
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1700769 216 -   2232465 AAAAATAATGCAAGTTCTGAAGACTTTTTT-TTTCTACTGGGTTTTTCTGATTGGCCTCATCTGGAAGTAGTTCTCTTTGTGGCGATCTTGATATTCTACTTGATGACGCTGATAGGCAACCTGTTCATCATCATCCTGTCATACGTGGACTCCCATCTCC-ACACTCCCATGTACTTCTTCCTCTCAAACCTCTCTTTTCTGGACCTCTGCTACACC
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26137406 216 +  26524999 GGAAAAAATGCAAG-TCTGAAAGCTACTTC-GTTCTACTGGGTTTTTCCAACTGGCCTCATCTGGAAGTAGTTCTCCTTGTGGTTATCTTGATGTTCTACTTGATGACATTGATAGGCTGCCTGTTTATCATTATCTTGTCATCCCTGGATGTCCATCTCCTACACTCCTATGTACTTCTTCCTCGCAAACATCTCTTTTCTGGATCTCTGCTACACC
i canFam3.chr35            C 0 C 0
s dasNov3.JH570037            297327 214 -    859332 --AAAAAATGCAAGTTCTCAAGACTACTTT-ATCCTGCTGGGTTTTTCTAATTGGCCTCATCTGGAACTGATTCTCTTTGTGGTTATCTTGATGTTCTACTTGACGACACTGACAGGCAACCTATTCATCATCATTCTGTCACACCTGGACACCCATCTCC-ACACTCCCATGTACTTCTTCCTCTCAAACCTCTCTTTTCTGGATCTCTGCTACACC
i dasNov3.JH570037         C 0 C 0
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=3953104.000000
s hg38.chr6_GL000254v2_alt    439597 533 +   4827813 ACCAGCTCTATCCCTCAGTTGCTGGTGAATCTCCGGGGCCCGGAAAAGACCATCTCGTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTTGCACTGGGAATCGCAGAGTGTGTCCTACTGGTGGTGATGTCGTATGATCGTTATGTAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCACTTGTTGGTTGCGGCTTCTTGGGTAATTGGTT--TTACTATCTCAGCACTTCATTCCTCCTTTACTTTCTGGGTACCCCTTTGTGGACATCGCCTAGTGGATCACTTCTTCTGTGAAGTTCCAGCACTTCTGCGTTTATCATGTGTTGACACCCATGCAAATGAGCTGACCCTCATGGTCATGAGCTCcatttttgttctcatacctctcattctcattctcaCTACCTATGGTGCCATTGCCCGGGCTGTACTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGTTTAGGACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTT
s panTro5.chr6              29420604 533 + 175400573 ACCAGCTCTATCCCTCAGTTGCTGGTGAATCTCCGGGGCCCGGAAAAGACCATCTCGTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTTGCACTGGGAATCGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGATCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCACTTGTTGGCTGCGGCTTCTTGGGTAATTGGTT--TTACCATCTCAGCACTTCATTCCTCCTTTACTTTCTGGGTACCCCTTTGTGGACATCGCCTAGTGGATCACTTCTTCTGTGAAGTTCCAGCACTTCTGCATTTATCATGTGTTGACACCCATGCAAATGAGCTGACCCTCATGGTCATGAGCTCCATTTTTGTTCTCATACCTCTCCTTCTCATTCTCACTTCCTATGGTGCCATTGCCCGGGCTGTACTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGTTTAGGACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29652608 533 + 173848474 ACCAGCTCTATCCCTCAGTTGCTGGTGAATCTCCGGGGCCCGGAAAAGACCATCTCGTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTTGCACTGGGAATCGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGATCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCACTTGTTGGCTGCGGCTTCTTGGGTAATTGGTT--TTACCATCTCAGCACTTCATTCCTCCTTTACTTTCTGGGTACCCCTTTGTGGACATCGCCTAGTGGATCACTTCTTCTGTGAAGTTCCAGCACTTCTGCGTTTATCATGTGTTGACACCCATGCAAATGAGCTGACCCTCATGGTCATGAGCTCcatttttgttctcatacctctcattctcattctcacttcCTATGGTGCCATTGCCCGGGCTGTACTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGTTTAGGACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5446963 531 +   6154872 ACCAGCTCTATCCCTCAGTTGCTGGTGAATCTCTGGG--CCGGAAAAGACCATCTCGTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTTGCACTGGGAATCGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGATCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCACTTGTTGGCTGCGGCTTCTTGGGTAATTGGTT--TTACTATCTCAGCACTTCATTCCTCCTTGACTTTCTGGGTACCCCTTTGTGGACATCGCCTAGTGGATCACTTCTTCTGTGAAGTTCCAGCACTTCTGCGTTTATCATGTGTTGATACCCATGCAAATGAGCTGACCCTCATGGTCATGAGCTCCATTTTTGTTCTCATACCTCTCACTCTCATTCTCACTTCCTATGGTGCCATTGCCCGGGCTGTACTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGTTTAGGACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29608880 533 + 172585720 ACCAGCTCTATCCCTCAGTTGCTGGTCAACCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTCGCACTGGGAATTGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCTGCTTGTTGGCTGTGGCTTCTTGGGTAAGTGGTT--TTACTACCTCAGCACTTCATTCCTCCTATACTTTCTGGATATCTCTGTGTGGACATCGCCTAGTGGATCACTTCTTCTGTGAAGTTCCAGCACTTCTGCGTTTATCATGTGTTGACACCCATGCAAATGAGCTGATCCTCATGGTCATGAGCTCCATTTTTGTTCTTATACCTCTCATCCTCATTCTCACTTCCTATGGTGCCATTGCCTGGGCTGTACTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGTTTAGGACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29270121 533 - 170955103 ACCAGCTCTATCCCTCAGTTGCTGGTCAACCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTCGCACTGGGAATTGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCTGCTTGTTGGCTGCGGCTTCTTGGGTAAGTGGTT--TTACTACCTCAGCACTTCATTCCTCCTATACTTTCTGGATATCTCTGTGTGGACATCGCCTAGTGGATCATTTCTTCTGTGAAGTTCCAGCACTTCTGCGTTTATCATGTGTTGACACCCATGCAAATGAGCTGATCCTCATGGTCATGAGCTCTATTTTTGTTCTTATACCTCTCATTCTCATTCTCACTTCCTATGGTGCCATTGCCTGGGCTGTACTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGTTTAGGACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2280172 533 -   2996164 ACCAGCTCTATCCCTCAGTTGCTGGTCAACCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTCGCACTGGGAATTGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCTGCTTGTTGGCTGCGGCTTCTTGGGTAAGTGGTT--TTACTACCTCAGCACTTCATTCCTCCTATACTTTCTGGATATCTCTGTGTGGACATCGCCTAGTGGATCATTTCTTCTGTGAAGTTCCAGCACTTCTGCGTTTATCATGTGTTGACACCCATGCAAATGAGCTGATCCTCATGGTCATGAGCTCTATTTTTGTTCTTATACCTCTCATTCTCATTCTCACTTCCTATGGTGCCATTGCCTGGGCTGTACTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGTTTAGGACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28567394 533 -  71996105 ACCAGCTCTATCCCTCAGTTGCTGGTCAACCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGCATGATTCAACTTTACTTTGTTCTCGCACTGGGAATTGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGATCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCCGCTTGTTGGCTGCGGCTTCTTGGGTAAGTGGTT--TTACTATCTCAGCACTTCATTCCTCCTTTACTTTCTGGATATCTCTGTGTGGACATCGCCTAGTGGATCACTTCTTCTGTGAAGTTCCAGCACTTCTGCGTTTATCATGTGTTGACATCCATGCAAATGAGCTGATCCTCATGGTCATGAGCTCTATTTTTGTTCTTATACCTCTCATTCTCATTCTCACTTCCTATGGTGCCATTGCCTGGGCTGTACTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGTTTGGAACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2297499 531 +   2316924 ACCAGCTCTATCCCTCAGTTGCTGGTCAACCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTCGCACTGGGAATTGCAGAGTGTGTCCTACTGCTGGTGATGTCCTATGATTGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTGCTGCTTGTTGGCTGCGGCTTCTTGGGTAAGTGGTT--TTACTACCTCAGCACTTCATTCCTCCTTTACTTTCTGGATA--TCTGTGTGGACATCGCCTAGTGGATCATTTCTTCTGTGAAGTTCCAGCACTTCTGCGTTTATCATGTGTTGACACCCATGCAAATGAGCTGATCCTCATGGTCATGAGCTCtatttttgttcttatacctctcattcttattctcacttcctatGGTGCCATTGCCTGGGCTGTACTGAGCATGCAATCAACCACTGGGCTTCAGAGAGTGTTTAGGACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2139295 533 -   3067355 ACCAGCTCTATCCCTCAGTTGCTGGTCAACCTCTGGGGCCTGGAAAAGACCATCTCTTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTTGCACTGGGAATTGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGTATTACACTGTCCTCATGCACCCTCGTTTCTGCCGCTTGTTGGCTGCGGCTTCTTGGGTAAGTGGTT--TTACTACCTCAGCGCTTCATTCCTCCTATACTTTCTGGATACCCCTATGTGGACATCGCCTAGTGGATCACTTCTTCTGTGAAGTTCCAGCACTTCTGCGTTTATCATGTGTTGACACCCATGCAAATGAGCTGATCCTCATGGTCATGAGCTCTATTTTTGTTCTTATACCTCTCATTCTCATTCTCACTTCCTATGGTGCCATTGCCTTGGCTGTACTGAGCATGCAATCAACCACTGGGCTTCAGAAAGTGTTTAGGACATGTGGAGCCCATCTTATGGTTGTATCTCTCTTTTT
i colAng1.NW_012115566v1   I 657 C 0
s calJac3.chr4             171588246 526 - 171630274 ACCAGCTCTATCCCTCAGTTGCTGGTCAATCTCTGGGACCCAGAAAAGACCATCTCTTATGCTGGCTGCATGATTCAACTTTACTTTGTTCTTGCACTGGGAACCACAGAGTGTGTCCTATTGGTGGTGATGTCCTATGACCATTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTTCTCATGCACCCTCATTTCTG---CTTGTTGGCTGTGGCTTCTTGGGTAAGTGGTT--TTACTACGTCAGCGCTTCAATCCTCCTTCAC-TTCTGGGTACCCCTGTGTGGACATCATCAAGTGGGTCA---CTTCTGTGAAGTTGCAGCACTTCTGTGATTATCATGTGTTGATACCCATGCAAATGAGCTGACCCTCATGGTCACGAGTTCCATTTTTGTTCTCATACCTCTCATCCTCATTCTCACTTCCTATGGTGCCGTTGCCCGGGCTGTACTGAGGTTGCAGTCAACTACTGGGCTTCAGAACGTGTTTAGGACATGTGGAGCCCATCTTAGGGTTGTATCTCTCTTTTT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1700985 533 -   2232465 ACCAGCTCTATCCCTCAATTGCTGGTCAACCTCTGGGGCCCTGACAAAACCATCTCTTATGCTGGTTGCATGATTCAACTTTACTTTGTCCTTGCTCTGGGAATCACAGAGTGTGTCCTCCTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTATGTAGACCCTTGCATTACACTGCCCTCATGCACCCTCGTGTCTGCCACCTGTTGGCTGTGGCTTCTTGGGTAAGCGGCT--TCACTATTTCAGCACTTCATTCATCCTTTACCTTCTGGGTACCCCTGTGTGGACATCGCCAAGTGGATCACTTCTTCTGTGAAGTTCCTGCACTGCTGCGACTATCGTGTGTTGATACCCGTGCTAATGAGCTGACCCTCATGGTGATGAGCTCCATTTTTGTTCTCATACCTCTCATCCTCATTCTCACTTCTTATGGTGCCATTGCCCGGACTGTACTAAGGATGCCGTCAACCACTGGCCTTCAGAAAGTTTTTGCCACGTGTGGAGCCCATCTTATGGTTGTCTCTCTCTTTTT
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26137622 535 +  26524999 ACCATCTTCATCCCTCAGTTGCTGATCAACCTCTGGGGCCCAAAAAAGACCATCTCTTACACTGGTTGCATGATTCAACTTTACTTTGTCTTTGCCCTGGGAACCACAGAGTGCGTCCTCCCAGTGGTGATGTCCTATGACTGTTATGCAGCTGTCTGTAGACCCCTGCATTATGCTGTCCTCATGAACCCTGATTTCTGCCACATATTGGCTGTGGCTTCCTGAGTCAGTTGTTGGTAAACAACTCTGCATTTCATTCTTCCTTTACTTTCTGGGTACCCCTATGTGGACATAACCAAGTAGACCATTTCTTCTGTGAAGTTCCAGCACTGCTGCAATTATCATGTGTTGATACCCATGCAGATGAGCTTACCCTCCTGATCACAAGCTGCATTTTTGTTCTCATACAACTCATCCTCATTCTCAGCTCATATGGTGCCATTGCTCAGGCTGTACTGAGGATGCAGTCAACAACCAGACTTCAGAAGGTCTTTGGAATATGTGAAGCCCATCTTATGGTTGTCTCCCTCTTTTT
i canFam3.chr35            C 0 I 1
s dasNov3.JH570037            297541 533 -    859332 ACCAGCTCCATCCCTCAGTTACTGGTCAACCTCTGGGGCCCAGAGAAGACCATCTCTTATGCTGGTTGCATGGTTCAACTCTATTTTGTTCTTGCACTGGGCACCACAGAATGTGTCCTGCTGGTGGTGATGTCCTATGACCCTTATGCGGCTGTTTGCAGACCCCTGCAATACACCGTCCTCATGCACCCTCGTTTCTGTCACCTGTTGGCTGTGGCTTCTTGGGTAAGTGGCT--TTCTTGACTCAGCACTTCATTCCTCTCTTACCTTCTGGGTACCCTTGTGTGGACATCGCCGAGTGGACCACTTCTTCTGTGAAGTTCCAGCACTGCTGCAACTGTCATGTGCTGATACGCATGCTAACAAGGTGACCCTACTGGTCATGAGCTCCTTTTTTGTATTCATACCACTCCTTCTGATTCTCAGTTCCTATGGAGCCATTGCCCAGGTTGTGCTGAAGATGCGGTCCACAGCTGGACTCCAGAAACTCTTTGGGACATGTGGAGCCCATCTTACAGTTGTGGCTCTCTTTTT
i dasNov3.JH570037         C 0 C 0
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=331663.000000
s hg38.chr6_GL000254v2_alt    440130 49 +   4827813 CATTCCAGTCATGTGCATGTATCTCCAGCCACCATCAGAAAATTCTCCT
s panTro5.chr6              29421137 49 + 175400573 CATTCCAGTCATGTGCATGTATCTCCAGCCACCATCAGAAAATTCTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29653141 49 + 173848474 CATTCCAGTCATGTGCATGTATCTCCAGCCACCATCAGAAAATTCTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5447494 49 +   6154872 CATTCCAGTCATGTGCATGTATCTCCAGCCACCATCAGAAAATTCTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29609413 49 + 172585720 CATTCCAGTCATGTGCATATATCTCCAGCCACCATCAGAAAATTCTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29270654 49 - 170955103 CATTCCAGTCATGTGCATATATCTCCAGCCACCATCAGAAAATTCTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2280705 49 -   2996164 CATTCCAGTCATGTGCATATATCTCCAGCCACCATCAGAAAATTCTCCT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28567927 49 -  71996105 CATTCCAGTCATGTGCATATATCTCCAGCCACCATCAGAAAATTCTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2298030 49 +   2316924 CATTCCAGTCATGTGCATGTATCTCCAGCCACCATCAGAAAATTCTCCT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2139828 49 -   3067355 CATTCCAGTCATGTGCATATATCTCCAGCCACCATCAGAAAATTCTCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171588772 49 - 171630274 CATTCCGGCCAAGTGCATATATCTCCAGCCACCATCAGAAAATTCTCCT
i calJac3.chr4             C 0 T 832
s otoGar3.GL873742           1701518 49 -   2232465 CATTCCAGTCATATGCATATATCTCCAGCCACCATCAGGAAAATTTCAA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            298074 49 -    859332 CATCCCAGCCATATGCATATATCTCCAGCCACCATCAGAAAATTCTCAA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138157  1 +  26524999 I
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=518998.000000
s hg38.chr6_GL000254v2_alt    440179 93 +   4827813 GATCAGGGCAAGTTCATTGCCCTCTTTTATACTGTTGTCACACCGAGTCTTAATCCTCTAATCTACACTCTCAGAAACAAGCATGTAAAAGGG
s panTro5.chr6              29421186 93 + 175400573 GATCAGGGCAAGTTCATTGCCCTCTTTTATACTGTTGTCACACCGAGTCTTAATCCTCTAATCTACACTCTCAGAAACAAGGATGTAAAAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29653190 93 + 173848474 GATCAGGGCAAGTTCATTGCCCTCTTTTATACTGTTGTCACACCGAGTCTTAATCCTCTAATCTACACTCTCAGAAACAAGGATGTAAAAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5447543 93 +   6154872 GATCAGGGCAAGTTCATTGCCCTCTTTTATACTGTTGTCACACCGAGTCTTAATCCTCTAATCTACACTCTCAGAAACAAGGATGTAAAAGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29609462 93 + 172585720 GATCAAGGCAAGTTCATTGCCCTCTTTTATACTGTTGTCACACCTAGTCTTAAccctctaatctacactctcagaaacaaggatgtaagagga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29270703 93 - 170955103 GATCAAGGCAAGTTCATTGCCCTCTTTTATACTGTTGTCACACCTAGTCTTAAccctctaatctacactctcagaaacaaggatgtaagagga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2280754 93 -   2996164 GATCAAGGCAAGTTCATTGCCCTCTTTTATACTGTTGTCACACCTAGTCTTAATcctctaatctacactctcagaaacaaggatgtaagagga
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17             28567976 93 -  71996105 GATCAAGGCAAGTTCATTGCCCTCTTTTATACTGTTGTCACACCTAGTCTTAACCCTTTGATCTACACGCTCAGAAACAAGGATGTAAGAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2298079 93 +   2316924 GATCAAGGCAAGTTCATTGCCCTCTTTTATACTGTTGTCACACCTAGTTTTAAccctctaatctacactttcagaaacaaggatgtaagaagg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2139877 93 -   3067355 GATCAAGGCAAGTTCATTGCCCTCTTTTATACTGTTGTCACACCTAGTCTTAAccctctaatctacactctcagaaacaaggatgtaagaagg
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1701567 93 -   2232465 GATCAAGGCAAATTCATTGCTCTCTTTTATACTGTTGTCACGCCTAGTCTCAACCCTCTAATCTACACTCTCCGAAACAAAGATGTAAGAGGG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            298123 93 -    859332 GACCAAGGCAAATTCATTGCCCTTTTTTACACTGTTGTAACACCTAGTCTGAACCCTCTAATCTATACTCTCAGAAATAAAGACATAAGAGGG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138157  1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e cerAty1.NW_012001495v1     2151606 3200 -   2157725 M
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=691748.000000
s hg38.chr6_GL000254v2_alt    440272 119 +   4827813 GCAGCGAAGAGACTATTGGGGTGGGAGTGGGGGAAGTGACAGGGAAATCATGTTGTCTGTTGTCATTGTTTTTCCTAGGGTCTTAGCCATCTTGAAAGGTGGTTTCCCTGCTTCTTTGT
s panTro5.chr6              29421279 119 + 175400573 GCAGCGAAGAGACTATTGGGGTGGGAGTGGGGGATGTGACAGGGAAATCATGTTGTCTGTTGTCATTGTTTTTCCTAGGGTCTTAGCCATCTTGAAAGGTGGTTTCCCTGCTTCTTTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29653283 119 + 173848474 GCAGCGAAGAGACTATTGGGGTGGGAGTGGGGGATGTGACAGGGAAATCATGTTGTCTGTTGTCATTGTTTTTCCTAGGGTCTTAGCCATCTTGAAAGGTGGTTTCCCTGCTTCTTTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5447636 119 +   6154872 GCAGCGAAGAGACTATTGGGGTGGGAGTGGGGGATGTGACAGGGAAATCATGTTGTCTGTTGTCATTGTTTTTCCTAGGGTCTTAGCCATCTTGAAAGGTGGTTTCCCTGCTTCTTTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29609555 116 + 172585720 gcagtgaagagactaaTGGGGTGGGAGTGGGGGATGTGACAGGGAAATCATGTTGGCTGTTG---TTGTTTTTCCTAGGGTCTCGTCCATCTTGAAAGGTGGTTTCCCTGCTTCTTTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29270796 116 - 170955103 gcagtgaagagactaaTGGGGTGGGAGTGGGGGATGTGACAGGGAAATCATGTTGGCTGTTG---TTGTTTTTCCTAGGGTCTCGTCCATCTTGAAAGGTGGTTTCCCTGCTTCTTTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2280847 116 -   2996164 gcagtgaagagactaaTGGGGTGGGAGTGGGGGATGTGACAGGGAAATCATGTTGGCTGTTG---TTGTTTTTCCTAGGGTCTCGTCCATCTTGAAAGGTGGTTTCCCTGCTTCTTTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2154806 116 -   2157725 GCAGTGAAGAGACTAATGGGGTGGGAGTGGGGGATGTGACAGGGAAATCATGTTGGCTGTTG---TTGTTTTTCCTAGGGTCTCATCCATCTTGAAAGGTGGTTTCTCTGCTTCTTTGT
i cerAty1.NW_012001495v1   M 3200 C 0
s chlSab2.chr17             28568069 116 -  71996105 GCAGTGAAGAGACTAATGGGGTGGGAGTGGGGGATGTGACAGAGAAATCATGTTGGCTGTTA---TTGTTTTTCTTAGGGTCTCGTCCATCTTGAAAGATGGTTTCTCTGCTTTTTTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2298172 116 +   2316924 gcagtgaagagactaaTGGGGTGGGAGTGGGGGATGTGACAGGGAAATCATGTTGGCTGTTG---TTGTTTTTCCTAGGGTCTCATCCATCTTGAAAGGTGGTTTCTCTGCTTCTTTGT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2139970 116 -   3067355 gcagtgaagagactaaTGGGGTGGGAGTGGGGGATGTGACAGGGAAATCATGTTGGCTGTTG---TTGTTTTTCCTAGGGTCTCGTCCATCTTGAAAGGTGGTTTCTCTGCTTCTTTGT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1701660 116 -   2232465 GCAGTGAAGAGACTAATAGGGTGGGAGTGGAAGATGTGACAGAGTAATCAAGTGCCTTGCAA---ATGTTTTTCAGAGGGTCTTGTCCATATTTGAGGGCAGTTTCCCTGCTTCCTTGT
i otoGar3.GL873742         C 0 I 116
s dasNov3.JH570037            298216 115 -    859332 GCAGTAAAGAGACAAATGGGCTGGGAGTGGGGGTTGTAACAGAGGAATCACTTGTCCTGCAA---TT-TTGTTCAACTGATCTTGTTCATCTGGGAGGGTGATTTCCCTGCTTCTTTGA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138157   1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1123647.000000
s hg38.chr6_GL000254v2_alt    440391 203 +   4827813 GATTTATTTTTGTTCTAACAGCTCACAAAACA--GAATAGTTCAGTCTCACATTTGTTGCTCTTTTTATTATTTAGTTCTGAAATATTATGTTGAG---ATAAAGTTTCTGATTAGTGCCACTTTGTTCTTTTACAATTGTATATTTTATTTCTGTGAAAATTGTGGACTGTGGTTTCAACGTAA--------ATAA----------ATGTGCATGCGAATAGTTA
s panTro5.chr6              29421398 203 + 175400573 GATTTATTTTTGTTCTAACAGCTCACAAAACA--GAATAGTTCAGTCTCACATTTGTTGCTCTTTTTATTATTTAGTTCTGAAATATTATGTTGAG---ATAAAGTTTCTGATTAGTGCCACTTTGGTCTTTTACAATTGTATATTTTATTTCTGTGAAAATTGTGGACTGTGGTTTCAACGTAA--------ATAA----------ATGTGCATGCAAATAGTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29653402 203 + 173848474 GATTTATTTTTGTTCTAACAGCTCACAAAACA--GAATAGTTCAGTCTCACATTTGTTGCTCTTTTTATTATTTAGTTCTGAAATATTATGTTGAG---ATAAAGTTTCTGATTAGTGCCACTTTGGTCTTTTACAATTGTATATTTTATTTCTGTGAAAATTGTGGACTGTGGTTTCAACGTAA--------ATAA----------ATGTGCATGCGAATAGTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5447755 203 +   6154872 GATTTATTTTTGTTCTAACAGCTCACAAAACA--GAATAGTTCAGTCTCACATTTGTTGCCCTTTTTATTATTTAGTTCTGAAATATTATGTTGAG---ATAAAGTTTCTGATTAGTGCCACTTTGGTCTTTTACAATTGTATATTTTATTTCTGTGAAAACTGTGGACTGTGGTTTCAACGTAA--------ATAA----------ATGTGCATGCGAATAGTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29609671 205 + 172585720 GATTTATTTTTGTTCTAACAGCTCACAAAACATGGAATAGTTCAGTCTCACATTTGTTGCTCTTTTTATTATTTAGTTCTGAAATATTGTCTTGAG---ATAAAGTTTTTGATTAGTGCCACTTTGGTCTTTTACAATTCTATATTTTAATCCCATGACAATTGCCAACTGTGGTTTCAACATAA--------ATAA----------ATGTGTGTGTGAATAGTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29270912 205 - 170955103 GATTTATTTTTGTTCTAACAGCTCACAAAACATGGAATAGTTCAGTCTCACATTTGTTGCTCTTTTTATTATTTAGTTCTGAAATATTGTCTTGAG---ATAAAGTTTTTGATTAGTGCCACTTTGGTCTTTTACAATTCTATATTTTATTTCCATGACAATTGCCAACTGTGGTTTCAACATAA--------ATAA----------ATGTGTGTGTGAATAGTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2280963 205 -   2996164 GATTTATTTTTGTTCTAACAGCTCACAAAACATGGAATAGTTCAGTCTCACATTTGTTGCTCTTTTTATTATTTAGTTCTGAAATATTGTCTTGAG---ATAAAGTTTTTGATTAGTGCCACTTTGGTCTTTTACAATTCTATATTTTATTTCCATGACAATTGCCAACTGTGGTTTCAACATAA--------ATAA----------ATGTGTGTGTGAATAGTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2154922 205 -   2157725 GATTTATTTTTGTTCTAACAGCTCACAAAACATGGAATAGTTCAGTCTCACATTTGTTGCTCTTTTTATTATTTAGTTCTGAAATATTATGTTGAG---ATAAAGTTTTTGATTAGTGCCACTTTGGTCTTTTACAATTCTATATTTTATTTCCGTGACAATTGTGGATTGTGGTTTCAACATAA--------ATAA----------ATGTGTGTGTGAATAGTTA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28568185 205 -  71996105 GATTTATTTTTGTTCTAACAGCTCACAAAACATGGAATAGTTCAGTCTCACATTTGTTGCTCTTTTTATTATTTAGTTCTGAAATATTATGTTGAG---ATAAAGTTTTTGATTAGTGCCACTTTGGTCTTTTACAATTCTATATTTTATTTCCATGACAATTGTGGATTGTGGTTTCAACATAA--------ATAA----------ATGTGTGTGTGAATAGTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2298288 205 +   2316924 GATTTATTTTTGTTCTAACAGCTCACAAAACATGGAATAGTTCAGTCTCACATTTGTTGCTCTTTTTATTATTTAGTTGTGAAATATTATCTTGAG---ATAAAGTTTTTGATTAGTGTCACTTTGGTCTTTTACAATTCTATATTTTATTTCCGTGACAATTGTGGACTGTGGTTTCAACATAA--------ATAA----------ATGTGTGTGTGAatagttg
i manLeu1.NW_012104165v1   C 0 I 99
s colAng1.NW_012115566v1     2140086 205 -   3067355 GGTTTATTTTTGTTCTAACAGCTCACAAAACATGGAATAGTTCAGTCTCACATTTGTTGCTCTTTTTATTATTTAGTTCTGAAATATTATCTTGAG---ATAAAGTTTTTGATTAGTGCCACCTTGGTCTTTTACAATTCTATATTTTATTTCCATGAAAATTGTGAACTGTGGTTTCAAAATAA--------ATAA----------ATGTGTGTGTGAATAGTTA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1701892 215 -   2232465 GATTTACTTTTACTCT-GCAACTTACTTAACATAGAGTAGCTCAGCCACAAATTTGTTGTTCTTTTTATTGTTTAATTCTGAAATATCTTGAATAGTCAATAAACTTTTTGATTAAAA--AAGTTAGTCCTTAAAAATTCTGTATTTTGT-----TAGGAATTATGGACTGTGGTTTCAACACAAGTGTGTCTATAAGTATGTGGGCATGTGTATGTGAATAA---
i otoGar3.GL873742         I 116 C 0
s dasNov3.JH570037            298331 203 -    859332 GATTTAGTTTTGATCT-ACAACCCTCCTAACCTAGAAGAGTCCAGACCCAAATTTGTTGCTCTTTCTTTAGGCTAATTCAGAAATATTTTCCATAA---GCAGCCTTTTTGATTAGTACCACTTTAGTCTTTATAAATTTCATA-TTCATTTCCACAGCTATTAGGAAATGGGGTTTTAACATAA--------TTTA----------ATGTGTATGTGTGTAATTG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138157   1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=78446.000000
s hg38.chr6_GL000254v2_alt    440594 15 +   4827813 TGAGGAGATTATTTC
s panTro5.chr6              29421601 15 + 175400573 TGAGGAGATTATTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29653605 15 + 173848474 TGAGGAGATTATTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5447958 15 +   6154872 TGAGGAGATTATTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29609876 15 + 172585720 TGAGGAGATTATTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29271117 15 - 170955103 TGAGGAGATTATTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2281168 15 -   2996164 TGAGGAGATTATTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2155127 15 -   2157725 TGAGGAGATTATTTC
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28568390 15 -  71996105 TGAGGAGATTATTTC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     2140291 15 -   3067355 TGAGGAGATTATTTC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1702107 15 -   2232465 TATTGAGACTATTTT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            298534 12 -    859332 ---TGAGATTATTTC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138157  1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e manLeu1.NW_012104165v1     2298493 99 +   2316924 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1682110.000000
s hg38.chr6_GL000254v2_alt    440609 312 +   4827813 AAAAATGTTGGGAATAT----------TTCTAACA---------ATGTGCTAAATTATGAACTGAT----GATAT-ATAC-------------AGAAAGAGAAGGGCAATATTGCAAAGACTTAGGCTAAAAAGGTTTTTGGTTATTGAATAAACCTTAAATGAAGCTAAAAAT--AGTCACAGCAAA-GAAAAATGGTAAACA-----TAATGAATAACATTGTTTAAGATATGGTAAAGGATATATCATA----AGTATTTGGTTGAAAGACAC-TTTTTAAAGACACTAAATTATCTAATTTATCCTGTAGGTCTACATACTT-GTCACATTGAACAGTA--AACTAATATCTCTTTAAAAT
s panTro5.chr6              29421616 312 + 175400573 AAAAATGTTGGGAATAT----------TTCTAACA---------ATGTGCTAAATTATGAACTGAC----GATAT-ATAC-------------AGAAAGAGAAGGGCAATATTGCAAAGACTTAGGCTAAAAAAGTTTTTGGTTATTGAATAAACCTTAAATGAAGCTAAAAAT--AGTCACAGCAAA-GAAAAATGGTAAACA-----TAATGAATAACATTGTTTAAGATATGGTAAAGGATATATCATA----AGTATTTGGTTGAAAGACAC-TTTTTAAAGACACTAAATTATCTAATTTATCCTGTAGGTCTACATACTT-GTCACATTGAACAGTA--AACTAATATCTCTTTAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29653620 312 + 173848474 AAAAATGTTGGGAATAT----------TTCTAACA---------ATGTGCTAAATTATGAACTGAC----GATAT-ATAC-------------AGAAAGAGAAGGGCAATATTGCAAAGACTTAGGCTAAAAAAGTTTTTGGTTATTGAATAAACCTTAAATGAAGCTAAAAAT--AGTCACAGCAAA-GAAAAATGGTAAACA-----TAATGAATAACATTGTTTAAGATATGGTAAAGGATATATCATA----AGTATTTGGTTGAAAGACAC-TTTTTAAAGACACTAAATTATCTAATTTATCCTGTAGGTCTACATACTT-GTCACATTGAACAGTA--AACTAATATCTCTTTAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5447973 312 +   6154872 AAAAATGTTGGGAATAT----------TTCTAACA---------ATGTGCTAAATTATGAACTGAC----GATAT-ATAC-------------AGAAAGAGAAGGGCAATATTGCAAAGACTTAGGCTAAAAAAGTTTTTGGTTATTGAATAAACCTTAAATGAAGCTAAAAAT--AGTCACAGCAAA-GAAAAATGGTAAACA-----TAATGAATAACATTGTTTAAGATATGGTAAAGGATATATCATA----AGTATTTGGTTGAAAGACAC-TTTTTAAAGACACTAAATTATCTAATTTATCCTGTAGGTCTACATACTT-GTCACATTGAACAGTA--AACTAATATCTCTTTAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29609891 316 + 172585720 AAAAATGTTGGAAATAT----------TTCTAACA---------GTGTGCTAAATTATGAATTGACTATTGATGT-ATAC-------------AGAAAGAGAAGGGCAATATTGCAAAGACTTAGGCTAAAAAAGTTTTTGGTTATTGAATAAACCTTAAATGAAGCTAAAAAT--AGTCACAGCAAA-GAAAAATGGTAACCA-----TAATGAATAATATTGTTTATTATATGGTAAAGGATATATCATA----AGTTTTTGGCTGAAAGACAC-TTCTTAAAGACACTAACTCATCTAATTTATCCTGTAGGTCTACATACTT-GCCACACTGAACGGTA--AACTAATATCTCTTTAAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29271132 316 - 170955103 AAAAATGTTGGAAATAT----------TTCTAACA---------GTGTGCTAAATTATGAATTGACTATTGATGT-ATAC-------------AGAAAGAGAAGGGCAATATTGCAAAGACTTAGGCTAAAAAAGTTTTTGGTTATTGAATAAACCTTAAATGAAGCTAAAAAT--AGTCACAGCAAA-GAAAAATGGTAACCA-----TAATGAATAATATTGTTTATTATATAGTAAAGGATATATCATA----AGTTTTTGGCTGAAAGACAC-TTCTTAAAGACACTAACTCATCTAATTTATCCTGTAGGTCTACATACTT-GTCACACTGAACGGTA--AACTAATATCTCTTTAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2281183 315 -   2996164 AAAAATGTTGGAAATAT----------TTCTAACA---------GTGTGCTAAATTATGAATTGACTATTGATGT-ATAC-------------AGAAAGAGAAGGGCAATATTGCAAAGACTTAGGCTAAAAAAGTTTTTGGTTATTGAATAAACCTTAAATGAAGCTAAAAAT--AGTCACAGCAAA-GAAAAATGGTAACCA-----TAGTGAATAATATTGTTTATTATATGGTAAA-GATATATCATA----AGTTTTTGGCTGCAAGACAC-TTCTTAAAGACACTAACTCATCTAATTTATCCTGTAGGTCTACATACTT-GTCACACTGAACGGTA--AACTAATATCTCTTTAAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2155142 312 -   2157725 AAAAATGTTGGA---AT----------TTTTAACA---------GTGTGCTAAATTATGAATTGACTATTGATGT-ATAG-------------AGAAAGAGAAGGGCAATATTGCAAAGA-TTAGGCTAAAAAAGTTTTTGGTTATTGAATAAACCTTAAATGAAGCTAAAAAT--AGTCACAGCAAA-GAGAAATGGTAACCA-----TAATGAATAATATTGTTTATTATATGGTAAAGGATATATCATA----AGTTTTTGGCTGAAAGACGC-TTTTTAAAGACACTAAATCATCTAATTTATCCTGTAAGTCTACATACTT-GTCACACTGAACAGTA--AACTAATATCTCTTTAAAAT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28568405 312 -  71996105 AAAAATGTTGGA---AT----------TTTTAACA---------GTGTGCTAAATTATGAATTGACTATTGATGT-ATAC-------------AGAAAGAGAAGGGCAATATTGCAAAGATT-AGGCTAAAAAAGTTTTTGGTTATTGAATAAACCTTAAATGAAGCTAAAAAT--AGTCACAGCAAA-GAGAAACGGTAACCA-----TAATGAATAATATTGTTTATTATATGGTAAAGGATGTATCATA----AGTTTTTGGCTGAAAGACAC-TTTTTAAAGACACTAAATCATCTAATTTATCCTGTAAGTCTACATACTT-GTCACGCTGAACAGTA--AACTAATATCTCTTTAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2298592 316 +   2316924 aaaaatGTTGGAAATAT----------TTCTAACA---------GTGTGCTAAATTATGAATTGACTATTGATGT-ATAC-------------AGAAAGAGAAGGGCAATATTGCAAAGACTGAGGCTAAAAAAGTTTTTGGTTATTGAATAAACCTTAAATGAAGCTAAAAAT--AGTCACAGCAAA-GAAAAATGGTAACCA-----TAATGAATAATATTGTTTATTTTATGGTAAAGTATATATCATA----AGTTTTTGGCTGAAAGACAC-TTTTTAAAGACTCTAAATCATCTAATTTATCCTGTAGGTCTACATACTT-GTCACACTGAACAGTA--AACTAATGTCTCTTTAAAAT
i manLeu1.NW_012104165v1   I 99 C 0
s colAng1.NW_012115566v1     2140306 316 -   3067355 AAAAATGTTGGAAATAT----------TTCTAACA---------GTGTGTTAAATTATGAATTGACTATTGATTT-ATAC-------------AGAAAGAGAAGGGCAATATTGCAAAGACTTAGGCTAAAAAAGTTTTTGGTTATTGAATAAACCTTAAATGAAGCTGAAAAT--AGTCACAGCAAA-GAAAAATGGTAACCA-----TAATGAATAATATTGTTTATTATATGGTAAAGGATGTATCATA----AGTTTTTGGCTGAAAGACAC-TTTTTAAAGACACTAAATCATCTAATTTATCCTGTAGGTCTACATACTT-GTCACACTGAACGGTA--AACTAATATCTCTTTAAAAT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1702122 325 -   2232465 TAAAATATTTGAAATGT----------TTCTAACA-----ATTGATAAGCTATGTTATGAACTGATTATCAATATAATAT-------------ACATAAAGGGGGGCGATATT--AAAAGCATAGGCTAATGGA-TTCTTTTTTATTGAACAGGCCTTAAATCAAGCTAAAAGT---GTCACAGCAAA-GGCAAATGGTAAATATGATGTGATGAATAGCATTATTTATTACATAGTAAA-AATGCATAGTAC--TATTAATTGGCTGAAGCACAT-TTTTTAAAAACACTATGT-GTGTAACTTATCCTATAGATTTATATACTTGGTTACATTGAATAGTAGGAACAAATATCTGTTTAAAAt
i otoGar3.GL873742         C 0 I 258
s dasNov3.JH570037            298546 335 -    859332 --AAGTATTTGaaatatttaaaaaatattataacatataaaGTAATATGCTGATTTGTAAACTGGGCATTACTAC-CTATGAAATGGAAGGGGAGAATAAAGGGAGCATTATAGCAAAAACTTAGGGtattatag----------ttgaacaggccctaaatttagctaaagactctctcacagcaaatgcaaaatggcaaaca-----tgatgagaagcatcacttattatgtgttaaa------atcatatgacaatctttgtctgaaacacacttttttcaagatactaaattccatgagtaat----tggctctatatactt-gtcacattgaacagca-taaAAAATATATGTTCAAACT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138157   1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1314924.000000
s hg38.chr6_GL000254v2_alt    440921 235 +   4827813 GGCTC--------------------------TTTCGTT-------------------------------------------CATCTGTCCATTTATTCATTAACTTATT--CTTTAT---------TAGCTAAATCTTATTGAATGTGTACTCTCTTCCAGTTTGTGA-----AATTCTTGGTAACGTGTATAAATATAACATA--CTCTGTCTGAACAGAACACACTCTCTGTCA--------GGAAAAATGGCAACA-----TA-----AAAGATGAAGTATCTGTGCATGGCTTAATTTGTCACTGGGGGTAATGCTAATACATTAAGACAGCTTTT
s panTro5.chr6              29421928 235 + 175400573 GGCTC--------------------------TTTCGTT-------------------------------------------CATCTGTCCATTTATTCATTAACTTATT--CTTTAT---------TAGCTAAATCTTATTGAATGTGTACTCTCTTCCAGTTTGTGA-----AATTCTTGGTAACGTGTATAAATATAACATA--CTCTGTCTGAACAGAACACACTCTCTGTCA--------GGAAAAATGGCAACA-----TA-----AAAGATGAAGTATCTGTACATGGCTTAATTTGTCACTGGGGGTAATGCTAATACATTAAGACAGCTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29653932 234 + 173848474 GGCTC--------------------------TTTCGTT--------------------------------------------ATCTGTCCATTTATTCATTAACTTATT--CTTTAT---------TAGCTAAATCTTATTGAATGTGTACTCTCTTCCAGTTTGTGA-----AATTTTTGGTAACGTGTATAAATATAACATA--CTCTGTCTGAACAGAACACACTGTCTGTCA--------GGAAAAATGGCAACA-----TA-----AAAGATGAAGTATCTGTACATGGCTTAATTTGTCACTGGGGGTAATGCTAATACATTAAGACAGCTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5448285 235 +   6154872 GGCTC--------------------------TTTCGTT-------------------------------------------CATCTGTCCGTTTATTCATTAACTTATT--CTTTAT---------TAGCTAAATCTTATTGAATGTGTACTCTCTTCCAGTTTGTGA-----AATTCTTGGTAACGTGTATAAATATAACATA--CTCTGTCTGAACAGAACACACTCTCTGTCA--------GGAAAAATGGCAACA-----TA-----AAAGATGAAGTATCTGTACATGGCTTAATTTGTCACTGGGGGTAATGCTAATACATTAAGACAGCTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29610207 243 + 172585720 GGCTC--------------------------ATTCGTT-------------------------------------------CCTCTGTCCATTTATTCATTAACTTATT--CTTTAT---------TAGCTAAATCTTATTGAATGTGTACTGTCTCCCAGTTTGTGA-----AATTCTTGGTAACATGTATAAATATAACATA--CTCTGTCCGAACAGAACACACTCTCTGTCCCTCCGTCCAGAAAAATGGCAACG-----TA-----AAAGATGAAGTATCCATTCATGGCTTAATTTGTCACTGGGGGTAATGCTAATAAATTAAGATAGCTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29271448 243 - 170955103 GGCTC--------------------------ATTCGTT-------------------------------------------CCTCTGTCCATTTATTCATTAACTTATT--CTTTAT---------TAGCTAAATCTTATTGAATGTGTACTGTCTCCCAGTTTGTGA-----AATTCTTGGTAACATGTATAAATATAACATA--CTCTGTCTGAACAGAACACACTCTCTGTCCCTCCGTCCAGAAAAATGGCAACG-----TA-----AAAGATGAAGTATCCATTCATGGCTTAATTTGTCACTGGGGGTAATGCTAATAAATTAAGATAGCTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2281498 243 -   2996164 GGCTC--------------------------ATTCGTT-------------------------------------------CCTCTGTCCATTTATTCATTAACTTATT--CTTTAT---------TAGCTAAATCTTATTGAATGTGTACTGTCTCCCAGTTTGTGA-----AATTCTTGGTAACATGTATAAATATAACATA--CTCTGTCTGAACAGAACACACTCTCTGTCCCTCCGTCCAGAAAAATGGCAACG-----TA-----AAAGATGAAGTATCCATTCATGGCTTAATTTGTCACTGGGGGTAATGCTAATAAATTAAGATAGCTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2155454 243 -   2157725 GGCTC--------------------------ATTTGTT-------------------------------------------CATCTGTCCATTTATTCATTAACTTATT--CTTTAT---------TAGCTAAATCTTATTGAATGTGTAGTCTCTCCCAGTTTGTGA-----AATTCTTGCTAACATGTATAAATATAACATA--CTTTGTCTGAACAGAACCCACTCTCTGTCCCTCCGTCCGGAAAAATGGCAACG-----TA-----AAAGATGAAGTATCCGTTCATGGCTTAATTTGTCACTGGGGGTAATGCTAATAAATTAAGATAGCTTTT
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28568717 243 -  71996105 GGCTC--------------------------ATTTatt-------------------------------------------catctgtccatttattcattaacttatt--ctttat---------tagctAAATCTTATTGAATGTGTAGTCTCTCCCAGTTTGTGA-----AATTCTTGCTAACATGTATAAATATAACATA--CTCTGTCTGAACAGAACACACTCTCTGTCCCTCTGTCCGGAAAAATGGCAACG-----TA-----AAAGATGAAGTATCCGTTCATGGCTTAATTTGTCACTGGGGGTAATGCTAATAAATTAAGATAGCTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2298908 243 +   2316924 GGCtc--------------------------attcatt-------------------------------------------cttctgtccatttattcattaactcatt--cttcat---------tAGCTAAATCTGTTTGAATGTGTACTCTCTCCCAGTTTGTGA-----AATTCTTGGTAACATGTATAAATATAACATA--CTCTGTCTGAACAGAACGCACTCTCTGTCCCTCCATCTGGAAAAATGGCAATG-----TA-----AAAGATGAAGTATCCGTTCATGGCTTAATTTGTCACTGGGGGTAATGCTAATAAATTAAGATAGCTTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2140622 243 -   3067355 GGCTC--------------------------ATTCGTT-------------------------------------------CATCTGTCCATTTATTCATTAACTTATT--CTTTAT---------TAGCTAAATCTTATTGAATGTGTACCCTCTCCCAGTTTGTGA-----AATTCTTGGTAACATGTATAAATATAACATA--CACTGTCTGAACAGAACACACTCTCTGTCCCTCCGTCCGGAAAAATGACAACG-----TA-----AAAGATGAAGTATCCGTTCATGGCTTAATTTGTCACTGGGGGTAATGCTAATAAATTAAGATAGCTTTT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1702705 272 -   2232465 ggctccgactcaaaaaaaaaaaaaattatttattcgtt-------------------------------------------tacctgtccatttattcatcaacttact--CTTCATTCCCTTCACTAGCTAAATCTTAT----TGTCTACTCTGTCCCTGATTGTGG-----GATTCTTGGTAACATACATGAGTATCACACATTTTTTGTCTG-ACAGAACTCACCCTCTTGTG--------GGAAAAATGGGAACGTAAGATA-----AAAGATGAAGTAGTTGTACATGACTTAATTTGTCACTGGGCATAAGGCCAATAAATCAAAGTAGCtttt
i otoGar3.GL873742         I 258 I 272
s dasNov3.JH570037            298881 286 -    859332 -AGTC--------------------------ATTCGTTCACCCATTTATTTATTACccatccatccatccatccatccatccatccatccatccatccatccattcattcaCTCTCT---------TAGCTAAATCTTAT----TGTCTACTCTTCCCCAGATTCTGGTTTTTTTTTTTTGGTAACATACATGAATAGAACACATTCTTTGTCTGAGTGGAATTCATTCTCTAGT---------GGGAACATGGTAATG-----TAATAGCAAAGGTGAAGTATTTATACATGATTCAATTCGTTGTTGAGCTCAACGCTAATAAATCAAGGTAGCtttt
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138157   1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=78170.000000
s hg38.chr6_GL000254v2_alt    441156 14 +   4827813 AAAAGTCAGAAACA
s panTro5.chr6              29422163 14 + 175400573 AAAAGTCAGAAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29654166 14 + 173848474 AAAAGTCAGAAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5448520 14 +   6154872 AAAAGTCAGAAACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29610450 14 + 172585720 AAAAGTCAGAAACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29271691 14 - 170955103 AAAAGTCAGAAACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2281741 14 -   2996164 AAAAGTCAGAAACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2155697 14 -   2157725 AAAAGTCAGAAACA
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28568960 14 -  71996105 AAAAGTCAGAAACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2299151 14 +   2316924 AAGAGTCAGAAACA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2140865 14 -   3067355 AAAAGTCAGAAACA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1703249 14 -   2232465 AAATAGCAAAACCA
i otoGar3.GL873742         I 272 C 0
s dasNov3.JH570037            299167 14 -    859332 taaaatataaaata
i dasNov3.JH570037         C 0 T 1904
e canFam3.chr35             26138157  1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=340318.000000
s hg38.chr6_GL000254v2_alt    441170 66 +   4827813 ATAAACTCTGATTACTCTTCAGATTGTATAAATCTTTCTTTCACTTTTTAAAAATCAAAAA--CAAgg
s panTro5.chr6              29422177 62 + 175400573 ATAAactctgattactcttcagattgtataaa----tctttcactttttaAAAATCAAAAA--CAAgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29654180 62 + 173848474 ATAAactctgattactcttcagattgtataaa----tctttcactttttaAAAATCAAAAA--CAAgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5448534 62 +   6154872 ATAAactctgattactcttcagattgtataaa----tctttcactttttaAAAATCAAAAA--CAAgg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29610464 62 + 172585720 ATAAactctgattactcttcagattgtgtaaa----tctttcactttttaAAAATCAAAAA--CAAgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29271705 62 - 170955103 ATAAactctgattactcttcagattgtgtaaa----tctttcactttttaAAAATCAAAAA--CAAgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2281755 62 -   2996164 ATAAactctgattactcttcagattgtgtaaa----tctttcactttttaAAAATCAAAAA--CAAgg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2155711 62 -   2157725 ATAAactctgattactcttcagattgtgtaaa----tctttcactttttaAAAATCAAAAA--CAAgg
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28568974 62 -  71996105 ATAAACTCtgattactcttcagattgtgtaaa----tctttcactttttaaaaaTCAAAAA--CAAgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2299165 62 +   2316924 ATAAactctgattactcttcagatcgtgtaaa----tctttcactttttaAAAATCAAAAA--CAAgg
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2140879 62 -   3067355 ATAAactctgattactcttcagattgtataaa----tctttcactttttaAAAATCAAAAA--CAAgg
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1703263 63 -   2232465 ATATATTCTGATT-TTTTTCAGATCAAATCAA----TCTTTCACCTTCTAAAAATAAAAAAAGCAAGG
i otoGar3.GL873742         C 0 I 12497
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157  1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=505803.000000
s hg38.chr6_GL000254v2_alt    441236 109 +   4827813 ccgagcacggtggctcacacctgtaatcccagcactttggaaggccgagtcaggtggatcatgaggtcaggagaccaagaccatcctggctaacaaggtgaaaccccat
s panTro5.chr6              29422239 109 + 175400573 ccgagcacggtggctcacacctgtaatcccagcactttggaaggccgagtcaggtggatcatgaggtcaggagaccaagaccatcctggctaacaaggtgaaaccccat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29654242 109 + 173848474 ccgagcacagtggctcacacctgtaatcccagcactttggaaggccgagtcaggtggatcatgaggtcaggagaccaagaccatcctggctaacaaggtgaaaccccat
i panPan2.chr6             C 0 T 57840
s gorGor5.CYUI01015250v1     5448596 109 +   6154872 ctgagcacggtggctcacacctgtaatcccagcactttggaaggccgagtcaggtggatcatgaggtcaggagaccaagaccatcctggctaacaaggtgaaaccccat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29610526 109 + 172585720 ccaagcgcggtggctcgcgcctgtaatcccagcactttgggaggctgaagcaggtggctcacgaggtcaggagatcaagaccatcctggctaacatggtgaaaccccat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29271767 109 - 170955103 ccaagcgcggtggctcgcgcctgtaatcccagcactttgggaggctgaagcaggtggctcacgaggtcaggagatcaagaccatcctggctaacatggtgaaaccccat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2281817 109 -   2996164 ccaagcgcggtggctcgcgcctgtaatcccagcactttgggaggctggagcaggtggctcatgaggtcaggagatcaagaccatcctggctaacatggtgaaaccccat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2155773 109 -   2157725 ccaagcacggtggctcacgcctgtaatcccagcactttgggaggctgaagcaggtggatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccctat
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28569036 109 -  71996105 ccaagcgcggtggctcacgcctgtaatcccagcactttgggaggctgaagcaggtggatcatgaggtcaggagatcgagaccatcctggctaacatggggaaaccctat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2299227 109 +   2316924 ccaagcgcggtggctcgcgcctgtaatcccagcactttgggaggctgaagcaggtggatcatgaggtcaggagatcgagaccatcctggctaacgtggtgaaaccccat
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2140941 109 -   3067355 ccaagcacggtggcttgcgcctgtaatcccagcactttgggaggctgaagtaggtggttcacgaggttaggagatcgagactatcctggctaacatggtgaaagcccat
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157   1 +  26524999 I
e otoGar3.GL873742           1703326 12497 -   2232465 I
e calJac3.chr4             171588821 832 - 171630274 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=206439.000000
s hg38.chr6_GL000254v2_alt    441345 52 +   4827813 ctctactaaaaatacaaaacaattagctaggcatggtggcacatgcctgtag
s panTro5.chr6              29422348 52 + 175400573 ctctactaaaaatacaaaaaaattagccaggcatggtggcacatgcctgtag
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5448705 52 +   6154872 ctctactaaaaatacaaaaaaattagccaggcatggtggcacatgcctgtag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29610635 52 + 172585720 ctctactaaaaatacaaaaaaattagccagacgtggtggcacacgcctgtag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29271876 52 - 170955103 ctctactaaaaatacaaaaaaattagccagacgtggtggcacacgcctgtag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2281926 52 -   2996164 ctctactaaaaatacaaaaaaattagccagacgtggtggcacacgcctgtag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012001495v1     2155882 52 -   2157725 ctctactaaaaatacaaaaaaattagccagatgtggtggcacacgcctgtag
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28569145 52 -  71996105 ctctactaaaaatacaaaaaaattagccagatgtggtggcacacgcctgtag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2299336 52 +   2316924 ctctactaaaaatacaaaaagattagccagatgtggtggcacacgcctgtag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2141050 52 -   3067355 ctctactaaaaatacaaaaaaattagccagacatggtggcacacgcctgtag
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157  1 +  26524999 I
e otoGar3.GL873742           1703326 12497 -   2232465 I
e calJac3.chr4             171588821 832 - 171630274 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T
e panPan2.chr6              29654351 57840 + 173848474 T

a score=18055.000000
s hg38.chr6_GL000254v2_alt    441397 4 +   4827813 tccc
s panTro5.chr6              29422400 4 + 175400573 tccc
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5448757 4 +   6154872 tccc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29610687 4 + 172585720 tccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29271928 4 - 170955103 tccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2281978 4 -   2996164 tccc
i macNem1.NW_012011356v1   C 0 I 7700
s cerAty1.NW_012001495v1     2155934 4 -   2157725 tccc
i cerAty1.NW_012001495v1   C 0 C 0
s chlSab2.chr17             28569197 4 -  71996105 tccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2299388 4 +   2316924 tccc
i manLeu1.NW_012104165v1   C 0 I 7704
s colAng1.NW_012115566v1     2141102 4 -   3067355 tccc
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742            648846 4 +   2232465 TCTA
i otoGar3.GL873742         T 4752 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157 1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T
e panPan2.chr6              29654351 57840 + 173848474 T

a score=5005.000000
s hg38.chr6_GL000254v2_alt    441401 1 +   4827813 a
s panTro5.chr6              29422404 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5448761 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29610691 1 + 172585720 a
i rheMac8.chr4             C 0 T 52666
s macFas5.chr4              29271932 1 - 170955103 a
i macFas5.chr4             C 0 I 10620
s macNem1.NW_012011356v1     2289682 1 -   2996164 A
i macNem1.NW_012011356v1   I 7700 C 0
s cerAty1.NW_012001495v1     2155938 1 -   2157725 a
i cerAty1.NW_012001495v1   C 0 n 0
s chlSab2.chr17             28569201 1 -  71996105 a
i chlSab2.chr17            C 0 T 46945
s manLeu1.NW_012104165v1     2307096 1 +   2316924 A
i manLeu1.NW_012104165v1   I 7704 C 0
s colAng1.NW_012115566v1     2141106 1 -   3067355 a
i colAng1.NW_012115566v1   C 0 T 33486
s otoGar3.GL873742            648850 1 +   2232465 A
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157 1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T
e panPan2.chr6              29654351 57840 + 173848474 T

a score=12481.000000
s hg38.chr6_GL000254v2_alt    441402 13 +   4827813 TTGAAGCTAAACT
s panTro5.chr6              29422405 13 + 175400573 TTGAAGCTAAACT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5448762 13 +   6154872 TTGAAGCTAAACT
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1     2289683 13 -   2996164 TTGAAGCTAAACA
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012104165v1     2307097 13 +   2316924 TTGAAGCTAAACA
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742            648851 11 +   2232465 CTGAAGTTAAA--
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157  1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e colAng1.NW_012115566v1     2141107 33486 -   3067355 T
e chlSab2.chr17             28569202 46945 -  71996105 T
e cerAty1.NW_012001495v1     2155939  0 -   2157725 I
e macFas5.chr4              29271933 10620 - 170955103 I
e rheMac8.chr4              29610692 52666 + 172585720 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T
e panPan2.chr6              29654351 57840 + 173848474 T

a score=22134.000000
s hg38.chr6_GL000254v2_alt    441415 16 +   4827813 TTTTTTTCACTTTACA
s panTro5.chr6              29422418 16 + 175400573 TTTTTTTCACTTTACA
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5448775 16 +   6154872 TTTTTTTCACTTTACA
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1     2289696 16 -   2996164 TTTTTTTCACTTTACG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       13786 16 +    766320 TTTTTTTCACTTTACG
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012104165v1     2307110 16 +   2316924 TTTTTTTCACTTTACG
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742            648862 14 +   2232465 TATTTTCCACCATA--
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157  1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e colAng1.NW_012115566v1     2141107 33486 -   3067355 T
e chlSab2.chr17             28569202 46945 -  71996105 T
e macFas5.chr4              29271933 10620 - 170955103 I
e rheMac8.chr4              29610692 52666 + 172585720 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T
e panPan2.chr6              29654351 57840 + 173848474 T

a score=49559.000000
s hg38.chr6_GL000254v2_alt    441431 19 +   4827813 TGAACATTTTGAAATCACT
s panTro5.chr6              29422434 19 + 175400573 TGAACATTTTGAAATCACT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5448791 19 +   6154872 TGAACATTTTGAAATCACT
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1     2289712 19 -   2996164 TGAACATTTTGAAATTACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       13802 19 +    766320 TGAACATTTTGAAATCACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28522257 19 -  71996105 TGAACATTTTGAAATAACG
i chlSab2.chr17            T 46945 C 0
s manLeu1.NW_012104165v1     2307126 19 +   2316924 TGAACATTTTGAAATCACT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2107621 19 -   3067355 TGAACATTTTGAAATAACT
i colAng1.NW_012115566v1   T 33486 C 0
s otoGar3.GL873742            648876 10 +   2232465 ---------TGAAATCACT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157  1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e macFas5.chr4              29271933 10620 - 170955103 I
e rheMac8.chr4              29610692 52666 + 172585720 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T
e panPan2.chr6              29654351 57840 + 173848474 T

a score=610522.000000
s hg38.chr6_GL000254v2_alt    441450 180 +   4827813 ACTAAATTCAATATT-TTCAACATATTATTTCATCCGTATGTAAAATTATTGGGATTGCAATTGTTATGTTTTCTATAATCACATTTTTGAAAATAACCTGAAAATGCTGAAAAGA-----AAAGTTCCTTATTCATTAACAAAGAAAAATTTTGTGTTTTATGGAAATTATCTTCCTTAGCTAGG
s panTro5.chr6              29422453 180 + 175400573 ACTAAATTCAATATT-TTCAACATATTATTTCATCCGTATGTAAAATTATTGGGATTGCAATTGTTATGTTTTCTATAATCACATTTTTGAAAATAACCTGAAAATGCTGAAAAGA-----AAAGTTCCTTATTCATTAACAAAGAAAGATTTTGTGTTTTATGGAAATTATCTTCCTTAGCTAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29596511 185 + 173848474 ACTAAATTCAATATT-TTCCACATATCTTTTCATCCATATGTAAGATTATTGTGATTGCAATGATTACGTTTTCCACAATCACATTTAAGAAAATAACCTGAAAATGCTGAAAAGAAAACTAAAGTTCCTTATTTATTAACAAAGAAAGATTTTGTGTTTTATGGAAATTATCTTCCTTAGCTAGG
i panPan2.chr6             T 57840 C 0
s gorGor5.CYUI01015250v1     5448810 180 +   6154872 ACTAAATTCAGTATT-TTCAACATATTATTTCATCCGTATGTAAAATTATTGGGATTGCAATTGTTATGTTTTCTATAATCACATTTATGAAAATAACCTGAAAATGCTGAAAAGA-----AAAGTTCCTTATTCATTAACAAAGAAAGATTTTGTGTTTTACGGAAATTATCTTCCTTAGCTAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1     2289731 183 -   2996164 ACCAAATTCAATATT-TTCAACGTATTATTTCATCCATATGTAAGATTATTGGGATTGTAATTGT--TGCTTTCTATAATCACATTTATGAAAATAACCTGAAAATGCTGAAAAGAAAACTAAAGTTCCTTGTTAATTAACAAAGAAAGATTTTGTGTTTTATGGAAATTATTTTCCTTAGCTAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       13821 185 +    766320 ACCAAATTCAATATT-TTCAACATATTATTTCATCCATATGTAAGATTATTGGAATTGTAATTGTTATGTTTTCTATAATCACATTTATGAAAGTAACCTGAAAATGCTGAAAAGAAAACTAAAGTTCCTTGTTAATTAACAAAGAAAGATTTTGTGTTTTATGGAAATTATTTTCCTTAGCTAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28522276 185 -  71996105 ACTAAATTCAATATT-TTCAACATATCTTTTCACCCATGTGTAAGATTATTGGGGTTACAATGATTACGTTTTCCACAATCACACTTAAGGAAATAGCCTGAAAATGGTGAAAAGAAAACTAAAGTTCCTTGTTTACTAACAAAGAAAGATTTTGTGTTTTATGGAAATTATCTTCCTTAGCTAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2307145 185 +   2316924 ACCAAATTCAGTATT-TTCAACATATTATTTCATCCATATGTAAGATTATTGGGATTGTAATTGTTATGTTTTCTATAATCACATTTATGAAAGTAACCTGAAAATGCTGAAAAGAAAACTAAAGTTCCTTGTTAATTAACAAAGAAAGATTTTGTGTTTTATGGAAATTATTTTCCTTAGCTAGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2107640 185 -   3067355 ACTAAATTCAATATT-TTCAACATATCTTTCCATCCATGTGTAAGATTATTGGGGTTACAATGATTACGTTTTCCACAATCACACTTAAGAAAATAACCTGAAAATGCTGAAAAGAAAACTAAAGTTCCTTGTTTATTAACAAAGAAAGATTCTGTGTTTTATGGAAATGATCTTCCGTAGCTAGG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742            648886 182 +   2232465 ACTAAATTTGATGTTCTTCAACATGTCTTTTCACCCTTATGTGAGATTATTGGGATTCCAATTATCATATTTCTTATAATCACATTTATGAAGATAACCTGAAAATTCTGGAATGAAAACTAAAGTTACTTATTTATTAACAAAG----ATTATTAGCTTCACGGGAATTGTCTTTCCCAGCTAGG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157   1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e macFas5.chr4              29271933 10620 - 170955103 I
e rheMac8.chr4              29610692 52666 + 172585720 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=12823.000000
s hg38.chr6_GL000254v2_alt    441630 5 +   4827813 TTAGA
s panTro5.chr6              29422633 5 + 175400573 TTAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29596696 5 + 173848474 TTAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5448990 5 +   6154872 TTAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1     2289914 5 -   2996164 TTAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       14006 5 +    766320 TTAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28522461 5 -  71996105 ATAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2307330 5 +   2316924 TTAGA
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742            649068 5 +   2232465 TTAGG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157 1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e colAng1.NW_012115566v1     2107825 0 -   3067355 C
e macFas5.chr4              29271933 10620 - 170955103 I
e rheMac8.chr4              29610692 52666 + 172585720 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=205513.000000
s hg38.chr6_GL000254v2_alt    441635 62 +   4827813 AATTTCTTTCAATTACCATTTACCTAGAAGTCACCATAAAATGAATGGGAAGAACTCGATAG--------
s panTro5.chr6              29422638 62 + 175400573 AATTTCTTTCAATTACCATTTACCTAGAAGTCACCATAAAATGAATGGGAAGAACTCGATAG--------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29596701 59 + 173848474 AATTTCCTTCAATTACCATTTACCTAGATGTCACCCTAAAATGAATG---AGAACTTGATAG--------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5448995 62 +   6154872 AATTTCTTTCAATTACCGTTTACCTAGAAGTCACCATAAAATGAATGGGAAGAACTCGATAG--------
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1     2289919 62 -   2996164 AATTTCTTTCAATTACCATTTACCTAGAAGTCACCATAAAATGAATGAGAAGAACTTGATAG--------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       14011 62 +    766320 AATTTCTTTCAATTACCATTTACCTAGAAGTCACCATAAAATGAATGAGAAGAACTTGATAG--------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28522466 59 -  71996105 AATTTCTTTCAATTACCGTTTACCTAGATGTCACCCTAAAATGAATG---AGAACTTGATAG--------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2307335 62 +   2316924 AATTTCTTTCAATTACCATTTACCTAGAAGTCACCATAAAATGAATGAGAAGAACTTGATAG--------
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2107825 59 -   3067355 AATTTCTTTCAATTACTGTTTACCTAGATGTCACCGTAAAATGAATG---AGAACTTGATAG--------
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742            649073 70 +   2232465 AATTCTTTTCAATTACTATTTGTCTGTATGTTACCCTAAGATGAATAAGAAGAACTTGATATTCAATAAG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157  1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e macFas5.chr4              29271933 10620 - 170955103 I
e rheMac8.chr4              29610692 52666 + 172585720 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=48105.000000
s hg38.chr6_GL000254v2_alt    441697 10 +   4827813 TTATTCTTCT
s panTro5.chr6              29422700 10 + 175400573 TTATTTTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29596760 10 + 173848474 TTATTTTTCT
i panPan2.chr6             C 0 I 3
s gorGor5.CYUI01015250v1     5449057 10 +   6154872 TTATTTTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29558026 10 + 172585720 TTATTTTTCT
i rheMac8.chr4             T 52666 I 3
s macNem1.NW_012011356v1     2289981 10 -   2996164 TTATTTTTCT
i macNem1.NW_012011356v1   C 0 I 3
s cerAty1.NW_012002711v1       14073 10 +    766320 TTATTTTTCt
i cerAty1.NW_012002711v1   C 0 I 3
s chlSab2.chr17             28522525 10 -  71996105 TTATTTTTCT
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012104165v1     2307397 10 +   2316924 TTATTTTTCt
i manLeu1.NW_012104165v1   C 0 I 3
s colAng1.NW_012115566v1     2107884 10 -   3067355 TTATTTTTCT
i colAng1.NW_012115566v1   C 0 I 3
s otoGar3.GL873742            649143 10 +   2232465 TTACTTTTCT
i otoGar3.GL873742         C 0 n 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157  1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e macFas5.chr4              29271933 10620 - 170955103 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=194872.000000
s hg38.chr6_GL000254v2_alt    441707 50 +   4827813 ATAAGGCAAATATATGAATAAAATATAAAATTAAAAAATTGTTTTCTAtt-------
s panTro5.chr6              29422710 50 + 175400573 ATAAGGCAAATATATGAATAAAATATAAAATTAAAAAATTGTTTTCTAtt-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29596773 49 + 173848474 ATAAGGCAAACATCTAAATAAAATATAAAATTAAAAAATTATTTTGTA-t-------
i panPan2.chr6             I 3 C 0
s gorGor5.CYUI01015250v1     5449067 50 +   6154872 ATAAGGCAAATATATGAATCAAATATAAAATTAAAAAATTGTTTTCTAtt-------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29558039 50 + 172585720 ATAAGGCAAACATCTGAATAAAATATAAAATTAAAAAATTATTTTGTATT-------
i rheMac8.chr4             I 3 I 61420
s macNem1.NW_012011356v1     2289994 50 -   2996164 AAAAGGCAAACACATGAATAAAATATAAAATTAAAAAATTATTTTCTAtt-------
i macNem1.NW_012011356v1   I 3 C 0
s cerAty1.NW_012002711v1       14086 50 +    766320 aaaaggcaaacatatgaataaaatataaaattaaaaaatTATTTTCTAtt-------
i cerAty1.NW_012002711v1   I 3 C 0
s chlSab2.chr17             28522538 50 -  71996105 ATAAGGCAAACATCTGAATAAAATATAAAGTTAAAAAATTATTTTGTATT-------
i chlSab2.chr17            I 3 I 1101
s manLeu1.NW_012104165v1     2307410 50 +   2316924 aaaaggcaaacatatgaataaaatataaaattaaaaaatTATTTTCTAtt-------
i manLeu1.NW_012104165v1   I 3 C 0
s colAng1.NW_012115566v1     2107897 50 -   3067355 ATAAGGCAAACATCTGAATAAAATATAAAATTAAAAAATTAttttgtatt-------
i colAng1.NW_012115566v1   I 3 I 1134
s otoGar3.GL873742           1715823 57 -   2232465 ATAAGGCAAATATCTGTACAAGATATAAAACTAAAATTCTCTTTTTTGTAATTTATT
i otoGar3.GL873742         I 12497 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157  1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e macFas5.chr4              29271933 10620 - 170955103 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=267682.000000
s hg38.chr6_GL000254v2_alt    441757 139 +   4827813 ttttgtgactttttattatggtaaaatttcaaacttagagaagaattgcaaaaaagtagtac-aaag-actgacatttaccctataaccagattaagcattagtttacattttcccccaaagctttgttatatc--------------------atctatc
s panTro5.chr6              29422760 159 + 175400573 ttttgtgactttttattatggtaaaatttcaaacttagagaagaattgcaaaaaagtagtac-aaag-actgacatttaccctataaccagattaagcattagtttacattttcccccaaagctttgttatatcatctatctatctatctatctatctatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29596822 140 + 173848474 ttttgtgactttttattatggtaaaatttcaaacttagagaagagttgcaaaaaagtagtacaaaag-actaacatttacccttttaccagattgagtattagtttacattttcccccaaagctttgttatatc--------------------atctatc
i panPan2.chr6             C 0 I 57409
s gorGor5.CYUI01015250v1     5449117 139 +   6154872 ttttgtgactttttattatggtaaaatttcaaacttagagaagaattgcaaaaaagtagtac-aaag-actgacatttaccctataaccagattaagcattagtttacattttcccccaaagctttgttatatc--------------------atctatc
i gorGor5.CYUI01015250v1   C 0 I 24
s macNem1.NW_012011356v1     2290044 138 -   2996164 ttttatgactttttattatggtaaaatttcaaacttagagcagagttgcaaaaaagtagtac-aaag-actagcatttaccctataaccagattgagtattagtttata-tttcccccaaagctttgttatatc--------------------atccatc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       14136 138 +    766320 ttttatgactttttattatggtaaaatttcaaacttagagcagagttgcaaacaagtagtac-aaag-actagtatttaccctataaccagattgagtattagtttata-tttcccccaaagctttgttatatc--------------------atccatc
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012104165v1     2307460 138 +   2316924 ttttatgactttttattatggtaaaatttcaaacttagagcagagttgcaaaaaagtagtac-aaag-actagtatttaccctataaccagattgagtattagtttata-tttcccccaaagctttgttatatc--------------------atccatc
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1715880 122 -   2232465 TTTTGTACTTTTTCATTATAGTAAATTCTCAAACTTATGAAACACTTGCAAAAAAGTATTAT-AAGGAACTAACATTTAC-------TCAGATT-ATTTTCAATCTAAT----------AAGCTCTGGtctatc--------------------atctatc
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157   1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e colAng1.NW_012115566v1     2107947 1134 -   3067355 I
e chlSab2.chr17             28522588 1101 -  71996105 I
e macFas5.chr4              29271933 10620 - 170955103 I
e rheMac8.chr4              29558089 61420 + 172585720 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=26013.000000
s hg38.chr6_GL000254v2_alt    441896 19 +   4827813 tatct----atctatctatctat
s panTro5.chr6              29422919 19 + 175400573 tatct----atctatctatctat
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5449280 19 +   6154872 tatct----atctatctatctat
i gorGor5.CYUI01015250v1   I 24 C 0
s macNem1.NW_012011356v1     2290182 19 -   2996164 tatct----atctatctatctat
i macNem1.NW_012011356v1   C 0 I 872
s cerAty1.NW_012002711v1       14274 19 +    766320 tatct----atctatctatctat
i cerAty1.NW_012002711v1   C 0 I 10
s manLeu1.NW_012104165v1     2307598 16 +   2316924 tatct----atctatctatc---
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1716002 23 -   2232465 tatctttgcatatatttttctat
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157  1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e colAng1.NW_012115566v1     2107947 1134 -   3067355 I
e chlSab2.chr17             28522588 1101 -  71996105 I
e macFas5.chr4              29271933 10620 - 170955103 I
e rheMac8.chr4              29558089 61420 + 172585720 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T
e panPan2.chr6              29596962 57409 + 173848474 I

a score=53162.000000
s hg38.chr6_GL000254v2_alt    441915 64 +   4827813 atctctatcatctat----tatatctatctatctatctatctatctatctatctatctatctatctat
s panTro5.chr6              29422938 68 + 175400573 atctctatcatctattctatctatctatctatctatctatctatctatctatctatctatctatctat
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5449299 68 +   6154872 atctctatcatctattatatctatctatctgtctgtctgtctgtctgtctgtctatctatctatctat
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1       14303 59 +    766320 ctctctatcatcta-----tc----tatctatgtatctatgtatctatctatgtatctatgtatctat
i cerAty1.NW_012002711v1   I 10 I 4
s manLeu1.NW_012104165v1     2307614 62 +   2316924 -tctctatcatcta-----tctatgtatctatgtatctatgtatctatgtatctatctatgtatctat
i manLeu1.NW_012104165v1   C 0 T 64917
s otoGar3.GL873742           1716025 53 -   2232465 gtctct---------------tatctgtctgtttgtctgtctatctatctatctatctatgtatctat
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157  1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e colAng1.NW_012115566v1     2107947 1134 -   3067355 I
e chlSab2.chr17             28522588 1101 -  71996105 I
e macNem1.NW_012011356v1     2290201 872 -   2996164 I
e macFas5.chr4              29271933 10620 - 170955103 I
e rheMac8.chr4              29558089 61420 + 172585720 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T
e panPan2.chr6              29596962 57409 + 173848474 I

a score=7640.000000
s hg38.chr6_GL000254v2_alt    441979 9 +   4827813 catctatct
s panTro5.chr6              29423006 9 + 175400573 catctatct
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5449367 9 +   6154872 catctatct
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1       14366 9 +    766320 catctatct
i cerAty1.NW_012002711v1   I 4 I 740
s otoGar3.GL873742           1716078 9 -   2232465 catctCTCT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157 1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e colAng1.NW_012115566v1     2107947 1134 -   3067355 I
e manLeu1.NW_012104165v1     2307676 64917 +   2316924 T
e chlSab2.chr17             28522588 1101 -  71996105 I
e macNem1.NW_012011356v1     2290201 872 -   2996164 I
e macFas5.chr4              29271933 10620 - 170955103 I
e rheMac8.chr4              29558089 61420 + 172585720 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T
e panPan2.chr6              29596962 57409 + 173848474 I

a score=22897.000000
s hg38.chr6_GL000254v2_alt    441988 49 +   4827813 ctttttctgcactagctgagagtaagttggagatgccacgtacctttac
s panTro5.chr6              29423015 49 + 175400573 ctttttctgcactagctgagagtaagttggagatgccacgtacctttac
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5449376 49 +   6154872 ctttttctgcactagctgagagtaagttggagatgccatgtacctttac
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742           1716087 49 -   2232465 Ctttttctgggctatttgaaggtaagttggagaagctatgttcctttac
i otoGar3.GL873742         C 0 I 11
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157  1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e colAng1.NW_012115566v1     2107947 1134 -   3067355 I
e manLeu1.NW_012104165v1     2307676 64917 +   2316924 T
e chlSab2.chr17             28522588 1101 -  71996105 I
e cerAty1.NW_012002711v1       14375 740 +    766320 I
e macNem1.NW_012011356v1     2290201 872 -   2996164 I
e macFas5.chr4              29271933 10620 - 170955103 I
e rheMac8.chr4              29558089 61420 + 172585720 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T
e panPan2.chr6              29596962 57409 + 173848474 I

a score=4644.000000
s hg38.chr6_GL000254v2_alt    442037 22 +   4827813 accaagtacttTTTTTTTTAAT
s panTro5.chr6              29423064 21 + 175400573 accaagtac-ttTTTTTTAAAT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5449425 22 +   6154872 accaagtacttTTTTTTTTAAT
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157  1 +  26524999 I
e otoGar3.GL873742           1716136 11 -   2232465 I
e calJac3.chr4             171588821 832 - 171630274 T
e colAng1.NW_012115566v1     2107947 1134 -   3067355 I
e manLeu1.NW_012104165v1     2307676 64917 +   2316924 T
e chlSab2.chr17             28522588 1101 -  71996105 I
e cerAty1.NW_012002711v1       14375 740 +    766320 I
e macNem1.NW_012011356v1     2290201 872 -   2996164 I
e macFas5.chr4              29271933 10620 - 170955103 I
e rheMac8.chr4              29558089 61420 + 172585720 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T
e panPan2.chr6              29596962 57409 + 173848474 I

a score=819660.000000
s hg38.chr6_GL000254v2_alt    442059 1482 +   4827813 TATTAGGTCATTTTTATTCCTTTTAAATTTTTTATTTTGTGTTAATTATTTGTCTGCATTCTATGTACATAACTGTATTGGAGTTTCAGTTTCATATTAAGTTGTATAAACTTTTGTGTTCCAAGGTTATACAAATTCATATGTATTTTCTTAGTTCATTGACTCTTATTTTGGTTTGTTACAATTTGTGATGTTAAAAGTCTAAAAATGTGTGCGTGGTTAATACTATCTATTGTTCATTAACATTGTGGTTTCTTCCTTTTCTTAATGCTATAATGTTCTTTTATTATAATTAttattattatactttaagttctacggtacatgtgcacaacctgcaggtttattacatatgtatacatgtgccatgttgctgtgctgcacccattaactcgtcatttacattaggtatatctcctcatgctatccctccccccaccacacaacaggccccggtgtgtgatgttccccttcctgtgtccaaatgttctcattgctcaattcccactcatgagtgagaacatgcggtgtttggttttttgtccttgggatagtttgctgagaatgatggtttccagcttcatccatgtccctacat---------------------------ggacatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccactctatcattgttggacatttgggttggttccaagtctttgctgttgtgaatagtgccgtaataaacatacgtgtgcatgtgtctttctagcagcatgatttataatcctttgggtatatacccagtaatgggatggttgggtcaaatggtatttctagttctagatccctgaggaatcaccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctgtccagcacctgttgtttcctgactttttaatgattgccattctaactggtgtgaggtggtatctcattgtggttttgatttgcatttctctgatggccagtgatggtgagcatcttttcatgtgttttttggctgcataaatgtcttcttttgagaagtgtctgttcatgtccttcgtccactttttgatggggctgtttgttcttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgagtagcttgcaaaaattttctcccattctgtaggttgcctattcactctgatggtagtttcttttgctgtgcagaaactctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggttttgttctagggtttttatggttttaggtctaacattgaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatccagtt
s panTro5.chr6              29423085 1509 + 175400573 TATTAGGTCATTTTTATTCCTTTTAAATTTTTTATTTTGTGTTAATTATTTGTCTGCATTCTATGTACATAACTGTATTGGAGTTTCAGTTTCATATTAAGTTGTATAAACTTTTGTGTTCCAAGGTTATACAAATTCATATGTATTTTCTTAGTTCATTGCCTCTTATTTTGGTTTGTTACAATTTGTGATGTTAAAAGTCTAAAAATGTGTGTGTGGTTAATACTATCTATTGTTCATTAACATTGTGGTTTCTTCCTTTTCTTAATGCTATAATGTTCTTTTATTATAATAATAattattatactttaagttctacggtacatgtgcacaacctgcaggtttattacatatgtatacatgtgccatgttgctgtgctgcacccattaactcgtcatttacattaggtatatctcctaatgctatccctccccccaccacacaacaggccccggtgtgtgatgttccccttcctgtgtccaaatgttctcattgctcaattcccacttatgagtgagaacatgcggtgttttgttttttgtccttgggatagtttgctgagaacgatggtttccagcttcatccatgtccctacatggatatgaactcatcatgtccatacaaggacatgaactcatcattttttatggctgcatattattccatggtgtatatgtgccacattttcttaatccactctatcattgttggacatttgggttggttccaagtctttgctgttgtgaatagtgccataataaacatacgtgtgcatgtgtctttctagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcaccacactgacttccacaatggttgaactattttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctgtccagcacctgttgtttcctgactttttaatgatggccattctaactggtgtgaggtggtatctcattgtggttttgatttgcatttctctgatggccagtgatggtgagcattttttcatgtgttttttggctgcataaatgtcttcttttgagaagtgtctgttcatgtcctttgtccactttttgatggggctgtttgttcttttcttgtaaatttgtttgagttcattgtagattctggataatagccctttgtcagatgagtagcttgcaaaaattttctcccattctgtaggttgcctattcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtccattttggcttttgataccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggttttgttctagggtttttctggttttaggtctaacattgaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatccagtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29654371 1508 + 173848474 TATTAGGTCATTTTTATTCCTTTTAAATTTTTTATTTTGTGTTAATTATTTGTCTGCATTCTATGTACATAACTGTATTGGAGTTTCAGTTTCATATTAAGTTGTATAAACTTTTGTGTTCCAAGGTTATACAAATTCATATGTATTTTCTTAGTTCATTGCCTCTTATTTTGGTTTGTTACAATTTGTGATGTTAAAAGTCTAAAAATGTGTGTGTGGTTAATACTATCTATTGTTCATTAACATTGTGGTTTCTTCCTTTTCTTAATGCTATAATGTTCTTTTATTATAATAATAattattatactttaagttctacggtacatgtgcacaacctgcaggtttattacatatgtatacatgtgccatgttgctgtgctgcacccattaactcgtcatttacattaggtatatctcctaatgctatccctccccccaccacacaacaggccccggtgtgtgatgttccccttcctgtgtccaaatgttctcattgctcaattcccacttatgagtgagaacatgcggtgttttgttttttgtccttgggatagtttgctgagaacgatggtttccagcttcatccatgtccctacatggatatgaactcatcatgtccatacaaggacatgaactcatcattttttatggctgcatattattccatggtgtatatgtgccacattttcttaatccactctatcattgttggacatttgggttggttccaagtctttgctgttgtgaatagtgccataataaacatacgtgtgcatgtgtctttctagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcaccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctgtccagcacctgttgtttcctgactttttaatgatggccattctaactggtgtgaggtggtatctcattgtggttttgatttgcatttctctgatggccagtgatggtgagcattttttcatgtgttttttggctgcataaatgtcttcctttgagaagtgtctgttcatgtcctttgtccactttttgatggggctgtttgttcttttcttgtaaatttgtttgagttcattgtagattctggataatagcgctttgtcagatgagtagcttgcaaaaattttctcccattctgtaggttgcctattcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtccattttggcttttgatgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtattgcctcggttttcttctagggtttttctgg-tttaggtctaacattgaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatccagtt
i panPan2.chr6             I 57409 I 6259
s gorGor5.CYUI01015250v1     5449447 1508 +   6154872 TATTAGGTCATTTTTATTCCTTTTAAATTTTTTATTTTGTGTTAATTATTTGTCTGTATTCTATGTACATAACTGTATTGGAGTTTCAGTTTCATATTAAGTTGTATAAACTTTTGTGTTCCAAGGTTATACAAATTCATATGTATTTTCTTAGTTCATTGCCTCTTATTTTGGTTTGTTACAATTTGTGATGTTAAAAGTCTAAAAATGTGTGCGTGGTTAATACTATCTATTATTCATTAACATTGTGGTTTCTTCCTTTTCTTAATGCTATAATGTTCTTTTATTATAATTAttattattatactttaaattctacggtacatgtgcacaacctgcaggtttattacatatgtatacatgtgccatgttgctgtgctgcacccattaactcgtcatttacattaggtatatctcctaatgctatccctccccccaccacacaacaggccccggtgtgtgatgttccccttcctgtgtccaaatgttctcattgctcaattcccacttatgagtgagaacatgcggtgtttggttttttgtccttgggatagtttgctgagaatgatggtttccagcttcatccatgtccctacatggacaagaactcatcatgtccatacaaggacatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccactctatcattgttggacatttgggttggttccaagtctttgctgttgtgaatagtgctgcaataaacatacgtgtgcatgtgtctttctagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctgtccagcacctgttgtttcctgactttttaatgattgccattctaactggtgtgaggtggtatctcgttgtggttttgatttgcatttctctgatggccagtgatggtgagcattttttcatgtgttttttggctgcataaatgtcttcttttgagaagtgtctgttcatgtccttcatccactttttgatggggctgtttgttcttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgagtagcttgcaaaaattttctcccattctgtaggttgcctattcgctctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtccattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtattgcctagattttgttctagggtttttctggttttaggtctaacattgaagtctttaatccatcttgaattaatttttgtataaggtgtaa-gaagggatccagtt
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157    1 +  26524999 I
e otoGar3.GL873742           1716136   11 -   2232465 I
e calJac3.chr4             171588821  832 - 171630274 T
e colAng1.NW_012115566v1     2107947 1134 -   3067355 I
e manLeu1.NW_012104165v1     2307676 64917 +   2316924 T
e chlSab2.chr17             28522588 1101 -  71996105 I
e cerAty1.NW_012002711v1       14375  740 +    766320 I
e macNem1.NW_012011356v1     2290201  872 -   2996164 I
e macFas5.chr4              29271933 10620 - 170955103 I
e rheMac8.chr4              29558089 61420 + 172585720 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=474503.000000
s hg38.chr6_GL000254v2_alt    443541 1727 +   4827813 tcggctttctacatatagctagccagttttcccagcagcatttgttaaatagggaatcctttccccatttcttgtttttttcaggtttgtcaaagatcagataattgtagatgtgtggtattatttctgagggctgtattctgttcctttgctctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagcgtgatgcctccagctttgttcttttgggttaggattggcttggcaatgcgggctcttttttggttccatatgaactttaaagcagttttttccaattctgtgaagaaagtcattggtagcttgatggggatcgcaccgaatctataaattaccttgggcagtatggccattttcgcgatattgattcttcctatccatgagcatggaatgttcttccatttgtttgtatcctcttttatttcattgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttgtattcctaggtatttgattctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgcctgttattggtgtataagaatgtttgtgattttcgcacattgattttgtatcctgagcctttgctgaagttgcttatcaacttaaggagattttgggctgagatgatggggttttctagatatacaatcatgtcatctgcaaacagggacaatttgacttcctcttttcctaattgaataccctttatttctttctcctgcctgattgccctggccagaacttccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttatcaaagggaatgtttccagtttttgcccattcagtatgatattggctgtggttttgtcataaatagctcttattattttgagatacgttccatcaatacctagtttattgagagtttttagcatgaagggctgttgaattttgtcaaaggccttttctgcatctattgagataatcatgtggtttttgtcttttgttc--------tgctggattacgtttattgatttgcgtacgttgaaccagccttgcatcccagggatgaagcccacttgatcatggtggataagctttttgatgtgctgctggattcggtttgccagtattttattgaggatttttgcatcgaggttcatcagggatgttggtctaaaattctttttttgttgtgtctctgccaggctttggtatcaggatgatgctggcctcataaaatgagttagggaggattccctctttttctattgattggagtagtttcagaaggaatggtaccagctcctccttgtacctctggtagaattcggctgtgaatccgtctggtcctggacttttttttggttggtaagctactaattattgcctcaatttcagagcctgttatttggtctattcagagattcaacttcttcctggtttagtcttgggagggtgtatgtgtcgaggaatttatccatttcttctagattttctagtttatttgcacagaggtgtttatagtattctctgatggtagtttgtgtttctgtgcgatcggtggtgatatcccctttatcattttttgttgtgtctatttgattcttctctcttttcttctttattagtcttgctagcagtctatcaattttgttgat
s panTro5.chr6              29424594 1735 + 175400573 tcagctttctacatatggctagccagttttcccagcagcatttgttaaatagggaatcctttccccatttcttgtttttttcaggtttgtcaaagatcagatacttgtagatgtgtggtcttatttctgagggctgtattctgttccattggtctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagcgtgatgcctccagctatgttcttttgggttaggattggcttggcaatgcgggctcttttttggttccatatgaactttaaagcagttttttccaattctgtgaagaaagtcattggtagcttgatggggatgacattgaatctataaattaccttgggcagtatggccattttcgcgatattgattcttcctacccatgagcatggaatgttcttccatttgtttgtatcctcttttatttcattgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattcctaggtatttgattctctttgaagcaattgtgaatgggagttcagtcatgatttggctctctgtttgcctgttattggtgtataagaatgcttgtgattttcgcacgttgattttgtatcctgagcctttgctgaagttgcttatcaactgaaggagattttgggctgagatgatggggttttctagatatacaatcatgtcatctgcaaacagggacaatttgacttcctcttttcctaattgaataccctttatttctttctcctgcctgattgccctggccagaacttccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttatcaaagggaatgcttccagtttttgcccattcagtatgatattggctgtggttttgtcataaatagctcttattattttgagatacgttccatcaatacctagtttattgagagtttttagcatgaagggctgttgaattttgtcaaaggccttttctgcatctattgagataatcatgtggtttttgtcttttgttctgtttatatgctggattacgtttattgatttgcgtacgttgaaccagctttgcatcccagggatgaagcccacttgatcatggtggataagctttttgatgtgctgctggattcggtttgccagtattttattgaggatttttgcatcgaggttcatcagggatattggtctaaaattctttttttgttgtgtctctgccaggctttggtatcaggatgatgctggcctcataaaatgagttagggaggattccctctttttctattgattggaatagtttcagaaggaatggtaccagctcctccttgtacctctggtagaattcagctgtgaatccgtctggtcctggacttttttttggttggtaagctactaattattgcctcaatttcagagcctgttatttggtctattcagagattcaacttcttcctggtttagtcttgggagggtgtatgtgtcgaggaatttatccatttcttctagattttctagtttatttgcgtagaggtgtttatagtattctctgatggtagtttgtgtttctgtgggatcagtggtgatatcccctttatcatttttcgttgtgtctatttgattcttctctcttttcttctttattagtcttgctagcagtctatcaattttgttgat
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5450955 1734 +   6154872 tcagctttctccatatggctagccagttttcccaacaccatttgttaaatagggaatcctttccccatttcttgtttttttcaggtttgtcaaagatcagatacttgtagatgtgtggtattatttctgagggctgtattctgttccattggtctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttaaagtcaggtagcgtgatgcctccagctttgttcttttggattaggattggcttggcaatgcgggctcttttttggttccatatgaactttaaagcagttttttcctattctgtgaagaaagtcattggtagcttgatggggatgacattgaatctataaattaccttgggcagtatggccattttcacgatattgattcttcctacccatgagcatggaatgttcttccatttgtttgtatcctcttttatttcattgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattcctaggtattt-attctctttgaagcaattgtgaatgggagttcactcatgatttggctctctgtttgcctgttattggtgcataagaatgcttgtgattttcgcacattgattttgtatcctgagcctttgctgaagttgcttatcaacttaaggagattttgggctgagatgatgggtttttctagatatacaatcatgtcatctgcaaacagggacaatttgacttcctcttttcctaattgaataccctttatttctttctcctgcctgattgccctggccagaacttccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttatcaaagggaatgcttccagtttttgcccattcagtatgatattggctgtggttgtgtcataaatagctcttattattttgagatacgttccatcaatacctagtttattgagagtttttagcatgaagggatgttgaattttgtcaaaggccttttctgcatctattgagataatcatgtggtttttgtcttttgttctgtttatatgctggattacgtttattgatttgcatacgttgaaccagccttgcatcccagggatgaagcccacttgatcatggtggataagctttttgatgtgctgctgcattcggtttgccagtattttattgaggatttttgcatcgaggttcatcagggatattggtctaaaattctttttttgttgtgtctctgccaggctttggtatcaggatgatgctggcctcataaaatgagttagggaggattccctctttttctattgattggaatagtttcagaaggaatggtaccagctcctccttgtacctctggtagaattcggctgtgaatccgtctggtcctggacttttttttggttggtaagctactaattattgcctcaatttcagagcctgttatttggtctattcagagattcaacttcttcctggtttagtcttgggagggtgtatgtgtcgaggaatttatccatttcttctagattttctagtttatttgcgtagaggtgtttatagtattctctgatggtagtttgtgtttctgtgtgatcggtggtgatatcccctttatcattttttcttgtgtctatttgattcttctctcttttcttctttattagtcttgctagcagtctatcaattttgttgat
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157    1 +  26524999 I
e otoGar3.GL873742           1716136   11 -   2232465 I
e calJac3.chr4             171588821  832 - 171630274 T
e colAng1.NW_012115566v1     2107947 1134 -   3067355 I
e manLeu1.NW_012104165v1     2307676 64917 +   2316924 T
e chlSab2.chr17             28522588 1101 -  71996105 I
e cerAty1.NW_012002711v1       14375  740 +    766320 I
e macNem1.NW_012011356v1     2290201  872 -   2996164 I
e macFas5.chr4              29271933 10620 - 170955103 I
e rheMac8.chr4              29558089 61420 + 172585720 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T
e panPan2.chr6              29655879 6259 + 173848474 I

a score=601484.000000
s hg38.chr6_GL000254v2_alt    445268 1086 +   4827813 ctttcaaaaaaccagctcctggattcattgattttttgaagggttttttgtgtgtctatctccttcagttctgctctgatcttagttatttcttgccttctgctagcttttgaatgtgtttgctcttacttctctagttcttttaattatgatgttagggtgtcagttttagatctttcctgctttctcttgtggacattcagtgttataaatttccctctacacactgctttaaatgtgtcccagagattctggtatgttgtatctttgttctcgctggtttcaaagaacatctttatttctgccttcatttcgttatgtaccagtagtcattcaggagcaggttgttcagtttccatgtagttgagtggttttgagtgagtttcttaatcctgagttgtagtttgatggcactgtggtctgagagacagtttgttataatttctgttcttttacatttgctgaggagtgcttttcttccagctatgtggtcaattttggaataagtgtgatgtggtactgagaagaatgtatattctgttgatttggggtggagagttctgtagatgtctattagcaccgcttggtgcagagctgagttcaattcctggatatccttgttaactttctgtcttgttgatctgtctattgttgacagtggggtgttaaagtctcccattattattgtgtgggagtctaagcctctttgtaggtctctaaggacttgttgtatgaatctgggtgctcttgtattgggtgcatgtatatttaggatagttagctcttcttgttgaattgatccctttaccattatgtaatggccttctttgtctcttttgatctttgttggtttaaagtctattttatcagagactaggattgcaacccctccctttttttgttttccatttgcttggtagatcttcctccatccctttatcttgaacctatgtgtgtctctgcatgtgagatgggtttcctgaatacagcacactgatgggtcttgaccctttatccaatttgccagtctgtgtcttttaattggagcatttagcccattcaagacatttacaccaaatattttat
s panTro5.chr6              29426329 1086 + 175400573 ctttcaaaaaaccagctcctggattcattgattttttgaagggttttttgtgtctctatttccttcagttctgctctgatcttagttatttcttgccttctgctagcttttgaatgtgtttgctcttacttctctagttcttttaattatgatgttagggtctcaattttagatctttcctgctttctcttgtggacatttagtgttataaatttccctctacacactgctttaaatgtgtcccagagattctggtatgttgtatctttgttctcgctggtttcaaagaacatctttatttctgccttcatttcgttatgtaccagtagtcattcaggagcaggttgttcagtttccatgtagttgagtggttttgagtgagtttcttaatcctgagttgtagtttgatggcactgtggtctgagagacagtttgttataatttctgttcttttacatttgctgaggagtgctttacttccagctatgtggtcaattttggaataagtgtgatgtggtactgagaagaatgtatattctgttgatttggggtggagagttctgtagatgtctattaggaccgcttggtgcagagctgagttcaattcctggatatccttgttaactttctgtcttgttgatctgtctattgttgacagtggggtgttaaagtctcccattattattgtgtgggagtctaagcctctttgtaggtctctaaggacttgttgtatgaatctgggtgctcttgtattgggtgcatgtatatttaggatagttagctcttcttgttgaattgatccctttaccattatgtaatggccttctttgtctcttttgatctttgttggtttaaagtctattttatcagagactaggattgcaacccctccctttttttgttttccatttgcttggtagatcttcctccatccctttatcttgaacttatgtgtgtctctgcatgtgagatgggtttcctgaatacagcacactgatgggtcttgaccctttatccaatttgccagtctgtgtcttttaattggagcatttagcccattcaagacatttacaccaaatattttat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29662138 1085 + 173848474 ctttcaaaacaccagctcctggattcattaattttttggagggttttttgtgtctctatttccttcagttctcctctaattttagttatttcttgccttctgctagcttttgaatgtgtttgctcttgcttttctagttcttttaattgtgatgttagggtctcaattttagatctttcctgctttctcttgtggacatttagtgttataaatttccctctacacactgctttaaatgtgtcccagagattctggtatgttgtatctttgttctcgctggtttcaaagaacatctttatttctgccttcatttcgttatgtaccagtagtcattcaggagcaggttgttcagtttccatgtagttgagtggttttgagtgagtttcttaatcctgagttgtagtttgatggcactgtggtctgagagacagtttgttataatttctgttcttttacatttgctgaggagtgctttacttccaactatgtggtcaattttggaataagtgtgatgtggtactgagaagaatgtatattctgttgatttggggtggagagttctgtagatgtctattaggaccgcttggtgcagagctgagttcaattcctggatatccttgttaactttctgtcttgttgatctgtctattgttgacagtggggtgttaaagtctcccattattattgtgtgggagtctaagcctctttgtaggtctctaaggacttgttgtatgaatctgggtgctcttgtattgggtgcatgtatatttaggatagttagctcttcttgttgaattgatccctttaccattatgtaatggccttctttgtctcttttgatctttgttggtttaaagtctattttatcagagactaggattgcaacccctccc-ttttttgttttccatttgcttggtagatcttcctccatccctttatcttgaacttatgtgtgtctctgcatgtgagatgggtttcctgaatacagcacactgatgggtcttgaccctttatccaatttgccagtctgtgtcttctaattggagcatttagcccattcaagacatttacaccaaatattttat
i panPan2.chr6             I 6259 C 0
s gorGor5.CYUI01015250v1     5452689 1086 +   6154872 ctttcaaaaaaccagctcctggattcattgattttttgaagggttttttgtgtgtctatctccttcagttctgctctgatcttagttatttcttgccttctgctagcttttgaatgtgtttgctcttacttctctagttcttttaattatgatgttagggtgtcaattttagatctttcctgctttctcttgtggacatttagtgttataaatttccctctacacactgctttaaatgtgtcccagagattctggtatgttgtatctttgttctctctggtttcaaagaacatctttatttctgccttcatttcgttatgtaccagtagtcattcaggagcaggttgttcagtttccatgtagttgagtggctttgagtgagtttcttaatcctgagttgtagtttgatggcactgtggtctgagagacagtttgttataatttctgttcttttacatttgctgaggagtgctttacttccagctttgtggtcaattttggaataagtgtgatgtggtactgagaagaatgtatattctgttgatttggggtggagagttctgtagatgtctattaggtccgcttggtgcagagctgagttcaattcctggatatccttgttaactttctgtcttgttgatctgtctattgttgacagtggggtgttaaagtctcccattattattgtgtgggagtctaagcctctttgtaggtctctaaggacttgttgtatgaatctgggtgctcttatattgggtgcatgtatatttaggatagttagctcttcttgttgaattgatccctttaccattatgtaatggccttctttgtctcttttgatctttgttggtttaaagtctattttatcagagactaggattgcaacccctccctttttttgttttccatttgcttggtagatcttcctccatccctttatcttgaacctatgtgtgtctctgcatgtgagatgggtttcctgaatacagcacactgatgggtcttgaccctttatccaatttgccagtctgtgtcttttaattggagcatttagcccattcaagacatttacaccaaatattttat
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157    1 +  26524999 I
e otoGar3.GL873742           1716136   11 -   2232465 I
e calJac3.chr4             171588821  832 - 171630274 T
e colAng1.NW_012115566v1     2107947 1134 -   3067355 I
e manLeu1.NW_012104165v1     2307676 64917 +   2316924 T
e chlSab2.chr17             28522588 1101 -  71996105 I
e cerAty1.NW_012002711v1       14375  740 +    766320 I
e macNem1.NW_012011356v1     2290201  872 -   2996164 I
e macFas5.chr4              29271933 10620 - 170955103 I
e rheMac8.chr4              29558089 61420 + 172585720 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=285888.000000
s hg38.chr6_GL000254v2_alt    446354 376 +   4827813 tcaatgtttcttgtctaagaagaaggatgttattttacataagtcctgcacagtacccaaatcagcaaatttaatatgggcacaatattattatctaatccatagtccacagtgagatttcttaaatagtcccaataattttgttaatagccacttttt-aaaaaaatcccagatgatacactgagaaatcacatctcactagtctccttccatctggaccagtgccacagcctttgtttgtct---------------acttaaacttgatacttttgaattgtacaggcaaactatttctctcaattagagtttttctcatgtgtcttcattattagaattagtctgtgtatttttaacataaatatcactgaggtgacatcatgttctg
s panTro5.chr6              29427415 376 + 175400573 tcaatgtttcttgtctaagaagaaggatgttattttacataagtcctgcacagtacccaaatcagcaaatttaatatgggcacaatattattatctaatccatagtccacagtgagatttcttaaatagtcccaataattttgttaatagccacttttt-aaaaaaatcccagatgatacactgagaaatcacatctcactagtctccttccatctggactagtgccacagcctttgtttgtct---------------acttaaacttgatgcttttgaattgtacaggcaaactatttctctcaattagagtttttctcatgtgtcttcattattagaattagtctgtgtatttttaacataaatatcactgaggtgacatcatgtcctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29663223 376 + 173848474 tcaatgtttcttgtctaagaagaaggatgttattttacataagtcctgcacagtacccaaatcagcaaatttaatatgggcacaatattattatctaatccatagtccacagtgagatttcttaaatagtcccaataattttgttaatagccacttttt-aaaaaaatcccagatgatacactgagaaatcacatctcactagtctccttccatctggactagtgccacagcctttgtttgtct---------------acttaaacttgatgcttttgaattgtacaggcaaactatttctctcaattagagtttttctcatgtgtcttcattattagaattagtctgtgtatttttaacataaatatcactgaggtgacatcatgtcctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5453775 377 +   6154872 tcaatgtttcttgtctaagaagaaggatgttattttacataagtcctgcacagtacccaaatcagcaaatttaatatgggcacaatattattatctaatccatagtccacagtgagatttcttaaatagtcccaataattttgttaatagccactttttaaaaaaaatcccagatgatacactgagaaatcacatctcactagtctccttccatctggaccagtgccacagcctttgtttgtct---------------acttaaactcgatacttttgaattgtacaggcaaactatttctctcaattagagtttttctcatgtgtcttcattattagaattagtctgtgtatttttaacataaatatcactgaggtgacatcatgtcctg
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742           1716147 385 -   2232465 tcagtgtttcttgtctaagaacaagcatgtcattttacttaatctctgta-gttatcaaaatcagaaaatttaatatgggcacaatggtattatctaatccatagtctatattcggatttctccaactgtctgaataattttgttaatagctacgtttt-aaaaga--tctggatcatacatttagagatcatatctcattgttctcctttaatctgcaccagttcttcagattttatttgtgtttgttgaaattgtgcttttgaacttgataattttgaacagcaaaggcaagcaatttctgtc---ttgagtttgtttcatgtacctttattattagaactaggctgtgcatttttggcaggaatatcacagtggggacatcatgtcctg
i otoGar3.GL873742         I 11 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157   1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e colAng1.NW_012115566v1     2107947 1134 -   3067355 I
e manLeu1.NW_012104165v1     2307676 64917 +   2316924 T
e chlSab2.chr17             28522588 1101 -  71996105 I
e cerAty1.NW_012002711v1       14375 740 +    766320 I
e macNem1.NW_012011356v1     2290201 872 -   2996164 I
e macFas5.chr4              29271933 10620 - 170955103 I
e rheMac8.chr4              29558089 61420 + 172585720 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=313816.000000
s hg38.chr6_GL000254v2_alt    446730 293 +   4827813 ttcagagcagcatctcagcagtctcatgatgttggtttgtacaaatacaggtgatcttaagatcaataaaatcacttggttatgttggtgtctgccaggtttttctactgtaaacttcactgtttttcagtttgaaattaacaagaaagttgtgaggagatattttagacta---------tgtacatgtcctgttccccatcaaatttttatcc---------------------------actag-ttttgcaatcatttatgtttttcttaacaccatcatcccttctatgtttattaattagggatctactgttaggaatggcttt
s panTro5.chr6              29427791 294 + 175400573 ttcagagcagcatctcagcagtctcatgatgttggtttgtacaaatacaggtgatcttaagatcaataaaatcacttggttatgttggtgtttgccaggtttttctactgtaaacttcactgtttgtcagtttgaaattaacaagaaagttgtgaggagatattttagacta---------tgtacatgtcctgttccccatcaaatttttatcc---------------------------actagtttttgcaatcatttatgtttttcttaacaccatcatcccttctatgtttattaattagggatctactgtaaggaatggcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29663599 294 + 173848474 ttcagagcagcatctcagcagtctcatgatgttggtttgtacaaatacaggtgatcttaagatcaataaaatcacttggttatgttggtgtttgccaggtttttctactgtaaacttcactgtttgtcagtttgaaattaacaagaaagttgtgaggagatattttagacta---------tgtacatgtcctgttccccatcaaatttttatcc---------------------------actagtttttgcaatcatttatgtttttcttaacaccatcatcccttctatgtttattaattagggatctactgtaaggaatggcttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5454152 293 +   6154872 ttcagagcagcatctgagcagtctcgtgatgttggtttgtacaaatacaggtgatcttaagatcaataaaatcacttggttatgttggtgtctgccaggtttttctactgtaaacttcactgtttttcagtttgaaattaacaagaaagttgtgaggagatattttagacta---------tgtgaatgtcctgttccccatcaaatttttatcc---------------------------actag-ttttgcaatcatttatgtttttcttaacaccatcatcccttctatgtttattaattagggatctactgtaaggaatggcttt
i gorGor5.CYUI01015250v1   C 0 C 0
s manLeu1.NW_012104165v1     2242759 302 +   2316924 Ttcagagcatcatcacagcaggctcatgatgttgg-ttgtgcaaatacaggcgatcttaagatcaataaaaccacttggttatggtggtgtctgccaggtttttctactataaacttcactgtttttcagtttgaaattaacaagaaatttgtgaggagatattttagactattttagatttgtacatatcctgctccccatcaaatttttatcc---------------------------actagcttttgcaatcatttatgtttttcttaagaccatcaccccttctatatttgttaattagggatctactatacggaatagcttt
i manLeu1.NW_012104165v1   T 64917 C 0
s otoGar3.GL873742           1716532 308 -   2232465 ttcagagcatcgtgttagcaggcatataatgtttgtttgtcca-------gtgatgatgacattaat-----catgcagttatgatggtgtcctctagattcttttactgtaaagtttagtctttctcactttgtaattaactagtgattagtgaagagatacttgagacta---------tgaaaatattctgttcctcatcaaatttccatcctcctttttccctgctgaatttttctttactagtttttacatccatttatgtttttc-taactctctaatcccctctatatttattaattaggaatctactgtaagaaatagattc
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157   1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e colAng1.NW_012115566v1     2107947 1134 -   3067355 I
e chlSab2.chr17             28522588 1101 -  71996105 I
e cerAty1.NW_012002711v1       14375 740 +    766320 I
e macNem1.NW_012011356v1     2290201 872 -   2996164 I
e macFas5.chr4              29271933 10620 - 170955103 I
e rheMac8.chr4              29558089 61420 + 172585720 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=9273.000000
s hg38.chr6_GL000254v2_alt    447023 9 +   4827813 ttcttcacc
s panTro5.chr6              29428085 9 + 175400573 ttcttcacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29663893 9 + 173848474 ttcttcacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5454445 9 +   6154872 ttcttcacc
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29282553 7 - 170955103 --ttcccca
i macFas5.chr4             I 10620 I 2
s manLeu1.NW_012104165v1     2243061 9 +   2316924 atcttcaca
i manLeu1.NW_012104165v1   C 0 I 65322
s otoGar3.GL873742           1716840 9 -   2232465 atcttcgcc
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157 1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e colAng1.NW_012115566v1     2107947 1134 -   3067355 I
e chlSab2.chr17             28522588 1101 -  71996105 I
e cerAty1.NW_012002711v1       14375 740 +    766320 I
e macNem1.NW_012011356v1     2290201 872 -   2996164 I
e rheMac8.chr4              29558089 61420 + 172585720 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=591669.000000
s hg38.chr6_GL000254v2_alt    447032 176 +   4827813 attcatttatttactc--ttactttttatatcagtacgagctttataattcttcttttgttaagttcattacta-----------------ctaatggttaaattgtcctacaattaaatgatggcaagcccttcaaactggatttta--ttttttttacgtatcctgatgttttttggagcat-----ttgtttactGCTT
s panTro5.chr6              29428094 176 + 175400573 attcatttatttactc--ttactttttatatcagtatgagctttataattcttcttttgttaagttcattacta-----------------ctaatggttaaattgtcctacaattaaatgatggcaagcccttcaaactggatttta--ttttttttacgtatcctgatgttttttggagcat-----ttgtttactGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29663902 176 + 173848474 attcatttatttactc--ttactttttatatcagtatgagctttataattcttcttttgttaagttcattacta-----------------ctaatggttaaattgtcctacaattaaatgatggcaagcccttcaaactggatttta--ttttttttacgtatcctgatgttttttggagcat-----ttgtttactGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5454454 177 +   6154872 attcatttatttactc--ttactttttatatcagtacgagctttataattcttcttttgttaagttcattacta-----------------ctaatggttaagttgtcctacaattaaatgatggcaagcccttcaaactggatttta-tttttttttacgtatcctgatgttttttggagcat-----ttgtttactGCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29619509 183 + 172585720 aTTCATTTATTTACTCTTTTACTTTTTATATCAGTATGAGCTTTCTAATTCTTCTTTTGTTAAATTCATTACTA-----------------CTAATGATTAAATTGTCTTACAATTAAATGATGGCAAGCCCTTCAAAATGGATTTTA--TTTTTTTTATGTGTCCTGACGTTTTTTGGAGCATAGCATTTGTTTACTATTT
i rheMac8.chr4             I 61420 C 0
s macFas5.chr4              29282562 183 - 170955103 aTTcatttatttactcttttactttttatatcagtatgagctttctaattcttcttttgttaaattcattacta-----------------ctaatgattaaattgtcttacaattaaatgatggcaagcccttcaaaatggatttta--ttttttttatgtgtcctgacgttttttggagcatagcatttgtttactATTT
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1     2291073 183 -   2996164 aTTCATTTATTTACTCTTTTACTTTTTATATCAGTATGAGCTTTCTAATTCTTCTTTTGTTAAATTCATTACTA-----------------CTAATGATTAAATTGTCTTACAATTAAATGATGGCAAGCCCTTCAAAATGGATTTTA--TTTTTTTTATGTGTCCTGACGTTTTTTGGAGCATAGCATTTGTTTACTATTT
i macNem1.NW_012011356v1   I 872 C 0
s cerAty1.NW_012002711v1       15115 182 +    766320 attcatttatttactcttttactttttatatcagtatgagctttctaattcttcttttgttaaattcattacta-----------------ctaatgattaaattgtcttacagttaaatgatggcaagcccttcaaaatggatttta--ttttttttatgtgtcctgacgttttttggagcATAGCA-TTGTTTACTATTT
i cerAty1.NW_012002711v1   I 740 C 0
s manLeu1.NW_012104165v1     2308392 182 +   2316924 aTTCATTTATTTACTCTTTTACTTTTTATATCAGTATGAGCTTTCTAATTCTTCTTTTGTTAAATTCATTACTA-----------------CTAATGATTAAATTGTCTTACAATTAAATGATGGCAAGCCCTTCAAAATGGATTTTA--TTTTTTTTATGTGTCCTGACGTTTTTTGGAGCATAGCA-TTGTTTACTATTT
i manLeu1.NW_012104165v1   I 65322 C 0
s otoGar3.GL873742           1716849 192 -   2232465 ----attcatttattattttattttttacatgaatatgagttttaagatttttattttgttcaattcattactatgtggtatcagtttttctgaatgatcaaattgccctgtgaatgaataattgtagacccttcaatctggtttttggtgtttttttatttgctctaa-gattcttggaacat-----tatctcatatttt
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            299181 1904 -    859332 T
e canFam3.chr35             26138157   1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e colAng1.NW_012115566v1     2107947 1134 -   3067355 I
e chlSab2.chr17             28522588 1101 -  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=53541.000000
s hg38.chr6_GL000254v2_alt    447208 12 +   4827813 TTTGAGTTTACC
s panTro5.chr6              29428270 12 + 175400573 TTTGAGTTTACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29664078 12 + 173848474 TTTGAGTTTACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5454631 12 +   6154872 TTTGAGTTTACC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29619692 12 + 172585720 TTTGAGTTTATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29282745 12 - 170955103 TTTGAGTTTACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2291256 12 -   2996164 TTTGAGTTTACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       15297 12 +    766320 TTTGAGTTTACC
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012104165v1     2308574 12 +   2316924 TTTGAGTTTACC
i manLeu1.NW_012104165v1   C 0 C 0
s otoGar3.GL873742           1717041 12 -   2232465 ttTGAGTTTACA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            297277 12 -    859332 TTTGCGTTTATG
i dasNov3.JH570037         T 1904 C 0
e canFam3.chr35             26138157  1 +  26524999 I
e calJac3.chr4             171588821 832 - 171630274 T
e colAng1.NW_012115566v1     2107947 1134 -   3067355 I
e chlSab2.chr17             28522588 1101 -  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=12881.000000
s hg38.chr6_GL000254v2_alt    447220 3 +   4827813 TGA
s panTro5.chr6              29428282 3 + 175400573 TGA
i panTro5.chr6             C 0 I 2
s panPan2.chr6              29664090 3 + 173848474 TGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5454643 3 +   6154872 TGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29619704 3 + 172585720 TGA
i rheMac8.chr4             C 0 I 3
s macFas5.chr4              29282757 3 - 170955103 TGA
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1     2291268 3 -   2996164 TGA
i macNem1.NW_012011356v1   C 0 I 8
s cerAty1.NW_012002711v1       15309 3 +    766320 TGA
i cerAty1.NW_012002711v1   C 0 I 6
s manLeu1.NW_012104165v1     2308586 3 +   2316924 TGA
i manLeu1.NW_012104165v1   C 0 I 4
s calJac3.chr4             171587989 3 - 171630274 TGA
i calJac3.chr4             T 832 C 0
s otoGar3.GL873742           1717053 2 -   2232465 TG-
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            297289 3 -    859332 TGA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138157 1 +  26524999 I
e colAng1.NW_012115566v1     2107947 1134 -   3067355 I
e chlSab2.chr17             28522588 1101 -  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=3400454.000000
s hg38.chr6_GL000254v2_alt    447223 458 +   4827813 TTTTTTTTTTCTCTCAGGTAATAGG---AAATGAATGATGATGG-AAAAGTCAATGCTAGCTCTGAGGGGTACTTTATTTTAGTTGGATTTTCTAATTGGCCTTATCTGGAAGTAGTTCTCTTTGTGGTTATTTTGATCTTCTGCTTGATGACACTGATAGGAAACCTGTTCATCATCATCCTGACGTACCTGGACTCCCATCTCCATACTCCCTTGTATTTCTTCCTTTCAAATCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTCAGTCTCTGGGGTGTGGGAAAGACCATTTCTTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTCACACTGGGAACCACAGAGTGTTTCCTACTGGTGGCGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACTCTCGTTTCTG
s panTro5.chr6              29428287 458 + 175400573 TTTTTTTTTTCTCTCAGGTAATAGG---AAATGAATGATGATGG-AAAAGTCAATGCTAGCTCTGAGGGGTACTTTATTTTAGTTGGATTTTCTAATTGGCCTTATCTGGAAGTAGTTCTCTTTGTGGTTATTTTGATCTTCTGCTTGATGACACTGATAGGAAACCTGTTCATCATCATCCTGACGTACCTGGACTCCCATCTCCATACTCCCTTGTATTTCTTCCTTTCAAATCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTCAGTCTCTGGGGTGTGGAAAAGACCATTTCTTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTCACACTGGGAACCACAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACTCTCGTTTCTG
i panTro5.chr6             I 2 C 0
s panPan2.chr6              29664093 456 + 173848474 --TTTTTTTTTTCTCAGGTAATAGG---AAATGAATGATGATGG-AAAAGTCAATGCTAGCTCTGAGGGGTACTTTATTTTAGTTGGATTTTCTAATTGGCCTTATCTGGAAGTAGTTCTCTTTGTGGTTATTTTGATCTTCTGCTTGATGACACTGATAGGAAACCTGTTCATCATCATCCTGACGTACCTGGACTCCCATCTCCATACTCCTTTGTATTTCTTCCTTTCAAATCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGTTGGTCAGTCTCTGGGGTGTGGAAAAGACCATTTCTTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTCACACTGGGAACCACAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACTCTCGTTTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5454646 457 +   6154872 -TTTTTTTTTCTCTCAGGTAATAGG---AAATGAATGATGATGG-AAAAGTAAATGCTAGCTCTGAGGGGTACTTTATTTTAGTTGGATTTTCTAATTGGCCTTATCTGGAAGTAGTTCTCTTTGTGGTTATTTTGATCTTCTGCTTGATGACACTGATAGGAAACCAGTTCATCATCATCCTGACGTACCTGGACTCCCATCTCCATACTCCCTTGTATTCCTTCCTTTCAAATCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTCAGTCTCTGGGGTGTGGAAAAGACCATTTCTTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTCACACTGGGAACCACAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACTCTCGTTTCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29619710 454 + 172585720 TTTTTTTTTTCTCTCAGGTAATAGG---AAATGAATGATGATGG-AAAAGTCAATGCTAGCTCTGAGGGGTACTTTATTTTA----GATTTTCTAATTGGCCTTATCTGGAAATAGTTCTCTTTGTGGTTATTTTGATCTTCTACTTGATGACACTGGTAGGAAACCTGTTCATCATTATCCTGTCATACCTGGACTCCCATCTCCACACTCCCTTGTATTTCTTCCTTTCAAATCTCTCATTTCTGGATCTCTGTTACACCACCAACTCTATCCCTCAGTTGCTGGACAATCTCTGGGGTCTGGAAAAGACCATTTCTTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTCACACTGGGAACCACAGAGTGTGTCCTACTGGTGATGATGTACTATGACCGTTATGCAGCTGTGTGTAGACTTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTG
i rheMac8.chr4             I 3 C 0
s macFas5.chr4              29282763 454 - 170955103 TTTTTTTTTTCTCTCAGGTAATAGG---AAATGAATGATGATGG-AAAAGTCAATGCCAGCTCTGAGGGGTACTTTATTTTA----GATTTTCTAATTGGCCTTATCTGGAAATAGTTCTCTTTGTGGTTATTTTGATCTTCTACTTGATGACACTGGTAGGAAACCTGTTCATCATTATCCTGTCATACCTGGACTCCCATCTCCACACTCCCTTGTATTTCTTCCTTTCAAATCTCTCATTTCTGGATCTCTGTTACACCACCAACTCTATCCCTCAGTTGCTGGACAATCTCTGGGGTCTGGAAAAGACCATTTCTTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTCACACTGGGAACCACAGAGTGTGTCCTACTGGTGATGATGTACTATGACCGTTATGCAGCTGTGTGTAGACTTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTG
i macFas5.chr4             I 3 C 0
s macNem1.NW_012011356v1     2291279 454 -   2996164 ttttttttttCTCTCAGGTAATAGG---AAATGAATGATGATGG-AAAAGTCAATGCTAGCTCTGAGGGGTACTTTATTTTA----GATTTTCTAATTGGCCTTATCTGGAAATAGTTCTCTTTGTGGTTATTTTGATCTTCTACTTGATGACACTGGTAGGAAACCTGTTCATCATTATCCTGTCATACCTGGACTCCCATCTCCACACTCCCTTGTATTTCTTCCTTTCAAATCTCTCATTTCTGGATCTCTGTTACACCACCAACTCTATCCCTCAGTTGCTGGACAATCTCTGGGGTCTGGAAAAGACCATTTCTTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTCACACTGGGAACCACAGAGTGTGTCCTACTGGTGATGATGTACTATGACTGTTATGCAGCTGTGTGTAGACTTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTG
i macNem1.NW_012011356v1   I 8 C 0
s cerAty1.NW_012002711v1       15318 454 +    766320 TTTTTTTTTCCTCTCAGGTAATAGG---AAATGAATGATGATGG-AAAAGTCAATGCTAGCTCTGAGGGGTACTTTATTTTA----GATTTTCTAATTGGCCTTAACTGGAAATAGTTCTCTTTGTGGTTATTTTGATCTTCTACTTGATGACACTGGTAGGAAACCTGTTCATCATTATCCTGTCATACCTGGACTCCCATCTTCACACTCCCTTGTATTTCTTCCTTTCAAATCTCTCATTTCTGGATCTCTGTTACACCACCAACTCTATCCCTCAGTTGCTGGACAATCTCTGGGGTCTGGAAAAGACCATTTCTTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTCACACTGGGAACCGCAGAGTGTGTCCTACTGGTGATGATGTACTATGACTGTTATGCAGCTGTGTGTAGACTTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTG
i cerAty1.NW_012002711v1   I 6 C 0
s chlSab2.chr17             28523689 458 -  71996105 TTTTTTTTTTCTCTCAGGTAATAGG---AAATGAATGATGATGG-AAAAGTCAATGCTAGCTCTGAGGGGTACTTTATTTTAGTTGGATTTTCTAACTGGCCTCATCTGGAAGTAGTTCTCTTCGTGGTTGTCTTGATCTTCTACTTGATGACACTGGTAGGAAACCTGTTCATCATTATCCTGTCATACCTGGACTCCCATCTCCACACTCCCATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTTAATCTCTGGGGCCCGGAAAAAACCATCTCTTATGCTGGTTGCGTGATTCAACTTTACTTTGTTCTTGCACTGGGAACCACAGAGTGTGTCCTACTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTG
i chlSab2.chr17            I 1101 C 0
s manLeu1.NW_012104165v1     2308593 454 +   2316924 TTTTTTTTTTCTCTCAGGTAATAGG---AAATGAATGATGATGG-AAAAGTCAATGCTAGCTCTGAGGGGTACTTTATTTTA----GATTTTCTAATTGGCCTTATCTGGAAATAGTTCTCTTTGTGGTTATTTTGATCTTCTACTTGATGACACTGGTAGGAAACCTGTTCATCATTATCCTGTCATACCTGGACTCCCATCTCCACACTCCCTTGTATTTCTTCCTTTCAAATCTCTCATTTCTGGATCTCTGTTACACCACCAACTCTATCCCTCAGTTGCTGGACAATCTCTGGGGTCTGGAAAAGACCATTTCTTATGCTGGTTGCATGGTTCAACTTTACTTTGTTCTCACACTGGGAACCGCAGAGTGTGTCCTACTGGTGATGATGTACTATGACTGTTATGCAGCTGTGTGTAGACTTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTG
i manLeu1.NW_012104165v1   I 4 C 0
s colAng1.NW_012115566v1     2109081 458 -   3067355 TTTTTTTTTTCTCTCAGGTAATAGG---AAATGAATGATGATGG-AAAAGTCAATGCTAGCTCTGAGGGGTACTTTATTTTAGTTGGATTTTCTAACTGGCCTCATCTGGAAGTAGTTCTCTTCGTGGTTGTCTTGATCTTCTACTTGATGACACTGATAGGAAACCTGTTCATCATCATCCTGTCATACCTGGACTCCCAACTCCACACTCCCATGTACTTCTTCCTTTCAAACCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTTAATCTCTGGGGCCCGGAAAAGACCATCTCTTATGCTGGTTGTGTGGTTCAACTTTACTTTGTTCTTGCACTGGGAACTGCAGAGTGTGTCCTACTGGTGGTGATGTCCTATGATCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCACCCTCGTTTCTG
i colAng1.NW_012115566v1   I 1134 C 0
s calJac3.chr4             171587992 454 - 171630274 -----TTCTTTCTTTAGGTGTAAGGGAAAAATGAATGATGATGA-AAAAA--AATGCAAGTTCTGTAGACTTCTTTACTCTACTTGGATTTTCTAATTGGCCTCATCTGGAAGCAGTTCTCTTTGTGGTTATCTTGATCTTCTACTTGATGACACTGATAGGAAACCTGTTCATCACCATCCTGTCATACCTGGACTCCCATCTCCACACTCCCATGTACTTCTTCCTTTCAGACCTTTCATTTCTGGATCTGTGCTACACCACCAGCTCTATCCCTCAGTTGCTGGTCAATCTCTGGGACCCAGAAAAGACCATCTCTTATGCTGGCTGCATGATTCAACTTTACTTTGTTCTTGCACTGGGAACCACAGAGTGTGTCCTATTGGTGGTGATGTCCTATGACCATTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTTCTCATGCACCCTCATTTCTG
i calJac3.chr4             C 0 I 375
s otoGar3.GL873742           1717055 458 -   2232465 -TTTTATTTCCCCTCAGATACCAGG---AAATGAATGATGATGGAAAAAGTCAATGCTAGTTCTGAGACCTACATTATTCTACTGGGTTTTTCTAATTGGCCTCATCTGGAAGTAGTTCTCTTTGTGGTGATCTTGATATTCTACTTGATGACGCTGATAGGCAACCTGTTCATCATCATCCTGTCATACGTGGACTCCCATCTCCACACTCCCATGTACTTCTTCCTCTCAAACCTCTCTTTTCTGGACCTCTGCTACACCACCAGCTCTATCCCTCAATTGCTGGTCAACCTCTGGGGCCCTGACAAAACCATCTCTTATGCTGGTTGCATGATTCAACTTTACTTTGTCCTGGCGCTGGGAACCACAGAGTGTGTCCTCCTGGTGGTGATGTCCTATGACCGTTATGCAGCTGTATGTAGACCTTTGCATTACACTGCCCTCATGCACCCTCGTGTCTG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            297292 449 -    859332 ---TTTTTTTTCTTCAGTTATCAGG---AAATGA---GTGATGG-AAAA---AATGCAAGTTCTCAAGACTACTTTATCCTGCTGGGTTTTTCTAATTGGCCTCATCTGGAACTGATTCTCTTTGTGGTTATCTTGATGTTCTACTTGACGACACTGACAGGCAACCTATTCATCATCATTCTGTCACACCTGGACACCCATCTCCACACTCCCATGTACTTCTTCCTCTCAAACCTCTCTTTTCTGGATCTCTGCTACACCACCAGCTCCATCCCTCAGTTACTGGTCAACCTCTGGGGCCCAGAGAAGACCATCTCTTATGCTGGTTGCATGGTTCAACTCTATTTTGTTCTTGCACTGGGCACCACAGAATGTGTCCTGCTGGTGGTGATGTCCTATGACCCTTATGCGGCTGTTTGCAGACCCCTGCAATACACCGTCCTCATGCACCCTCGTTTCTG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138157   1 +  26524999 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=2027116.000000
s hg38.chr6_GL000254v2_alt    447681 333 +   4827813 CCACTTGTTGGCTGTGGCTTCTTGGGTAAGTGGTTTTACAAACCCAGCACTTCATTCCTCCTTCACCTTCTGGGTACCTCTGTGTGGACACCGCCAAATAGATCACTTTTTCTGTGAAGTTCCGGCACTTTTATGATTATCATTTGTCAATACCCGTGAAAATAAACTGACCCTCATGATCACAAGCTCCATTTTTGTTCTGCTACTTCTCACCCTCATTTTCACTTCCTATGGTGCTATTGCCCAGGCTGTACTGAGGATGCAGTCAACCACTGGGCTTCAGAAAGTATTTGGAACATGTGGAGCTCATCATATGGTTGTATCTCTCTTTTT
s panTro5.chr6              29428745 333 + 175400573 CCGCTTGTTGGCTGTGGCTTCTTGGGTAAGTGGTTTTACAAACCCAGCACTTCATTCCTCCTTCACCTTCTGGGTACCTCTGTGTGGACACCGCCAAATAGATCACTATTTCTGTGAAGTTCCGGCACTTTTATGATTATCATTTGTCAATACCTGTGAAAATAAACTGACCCTCATGATCACAAGCTCCATTTTTGTTCTGCTACTTCTCACCCTCATTTTCACTTCCTATGGTGCCATTGTCCAGGCTGTACTGAGGATGCAGTCAACCACTGGGCTTCAGAAAGTGTTTGGAACATGTGGAGCTCATCATATGGTTGTATCTCTCTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29664549 333 + 173848474 CCGCTTGTTGGCTGTGGCTTCTTGGGTAAGTGGTTTTACAAACCCAGCACTTCATTCCTCCTTCACCTTCTGGGTACCTCTGTGTGGACACCACCAAATAGATCACTTTTTCTGTGAAGTTCCAGCACTTTTATGATTATCATTTGTCAATACCTGTGAAAATAAACTGACCCTCATGATCACAAGCTCCATTTTTGTTCTGCTACTTCTCACCCTCATTTTCACTTCCTATGGTGCCATTGTCCAGGCTGTACTGAGGATGCAGTCAACCACTGGGCTTCAGAAAGTGTTTGGAACATGTGGAGCTCATCATATGGTTGTATCTCTCTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5455103 333 +   6154872 CCGCTTGTTGGCTGTGGTTTCTTGGGTAAGTGGTTTTACCAACTCAGCACTTCATTCCTCCTTCACCTTCTGGGTACCTCTGTGTGGACACCGCCAAATAGATCACTTTTTCTGTGAAGTTCCGGCACTTTTATGATTATCATTTGTCAATACCCGTGAAAATAAACTGACCCTCATGACCACAAGCTCCATTTTTGTTCTGCTACTTCTCACCCTCATTTTCACTTCCTATGGTGCCATTGTCCAGGCTGTACTGAGGATGCAGTCAACCACTGGGCTTCAGAAAGTGTTTGGAACATGTGGAGCTCATCATATGGTTGTATCTCTCTTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29620164 333 + 172585720 CTGCTTGTTGGCTGTGGCTTCTTGGGTAAGTGGTTTTACAAACTCAGCACTTAATTCCTCCTTTTCCTTCTGGGTACCGCTGTGTGGACATCACCAAGTAGATCACTTTTTCTGTGAAGTTCCAGCACTTTTGTGATTATTGTGGGTCAGTACCCATGCAAATAAGCTGACCCTCATAATCACAAGCTCCATTTTTGTTCTCCTACTTCTCACCCCCATTTTCACTTCCTATGGTGCCATCGTCCAGGCTGTACTGAGGATGTAGTTAACTGCTGGGCTTCGGAAAGTGTTTGGAATATGTGGAGCTCATCTTATGGTTGTACCTCTCTTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29283217 333 - 170955103 CTGCTTGTTAGCTGTGGCTTCTTGGGTAAGTGGTTTTACAAACTCAGCACTTAATTCCTCCTTTTCCTTCTGGGTACCGCTGTGTGGACATCACCAAGTAGATCACTTTTTCTGTGAAGTTCCAGCACTTTTGTGATTATTGTGGGTCAGTACCCATGCAAATAAGCTGACCCTCATAATCACAAGCTCCATTTTTGTTCTCCTACTTCTCACCCCCATTTTCACTTCCTATGGTGCCATCGTCCAGGCTGTACTGAGGATGTAGTTAACTGCTGGGCTTCGGAAAGTGTTTGGAATATGTGGAGCTCATCTTATGGTTGTATCTCTCTTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2291733 333 -   2996164 CTGCTTGTTGGCTGTGGCTTCTTGGGTAAGTGGTTTTACAAACTCAGCACTTAATTCCTCCTTTTCCTTCTGGGTACCGCTGTGTGGACATCACCAAGTAGATCACTTTTTCTGTGAAGTTCCAGCACTTTTGTGATTATTGTGGGTCAGTACCCATGCAAATAAGCTGACCCTCATAATCACAAGCTCCATTTTTGTTCTCCTACTTCTCACCCCCATTTTCACTTCCTATGGTGCCATCGTCCAGGCTGTACTGAGGATGTAGTTAACTGCTGGGCTTCGGAAAGTGTTTGGAATATGTGGAGCTCATCTTATGGTTGTATCTCTCTTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       15772 333 +    766320 CTGCTTGTTGGCTGTGGCTTCTTGGGTAAGTGGTTTTACAAACTCAGCACTTAATTCCTCCTTTTCCTTCTGGGTACCGCTGTGTGGACATCACCAAGTAGATCACTTTTTCTGTGAAGTTCCAGCACTTTTGTGATTATTGTGGGTCAGTACCCATGCAAATAAGCTGACCCTCATAATCACAAGCTCCGTTTTTGTTCTCCTACTTCTCACCCCCATTTTCACTTCCTATGGTGCCATCATCCAGGCTGTACTGAGGATGTAGTTAACTGCTGGGCTTCGGAAAGTGTTTGGAATATGTGGAGCTCATCTTATGGTTGTATCTCTCTTTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28524147 333 -  71996105 CTACCTGCTGGCTGTGGCTTCTTGGGTAAGTGGTTTTACCAACTCAGCACTTCATTCGTCCTTCACCTTCTGGATACCCCTGTGTGGACACCACCAAGTAGATCACTTTTTCTGTGAAGTTCCAGCACTTCTGCGATTATCGTGTGTTGATACCCATGCCAATGAGCTGACCCTCATGATCACAAGCTCCGTTTTTGTTCTCATACCTCTTGTCCTCATTCTCACTTCTTATGGTGCCATTGTCCAGGCTGTACTGAGGATGCAATCAACCACTGGGCTTCAGAGAGTGTTTGGAACATGTGGAGCCCACCTTATGGTTGTATCTCTCTTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2309047 333 +   2316924 CTGCTTGTTGGCTGTGGCTTCTTGGGTAAGTGGTTTTACAAACTCAGCACTTAATTCCTCCTTTTCCTTCTGGGTACCGCTGTGTGGACATCACCAAGTAGATCACTTTTTCTGTGAAGTTCCAGCACTTTTGTGATTATTGTGGGTCAGTACCCATGCAAATAAGCTGACCCTCATAATCACAAGCTCCATTTTTGTTCTCCTACTTCTCACCCCCATTTTCACTTCCTATGGTGCCATCGTCCAGGCTGTACTGAGGATGTAGTTAACTGCTGGGCTTCGGAAAGTGTTTGGAATATGTGGAGCTCATCTTATGGTTGTATTTCTCTTTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2109539 333 -   3067355 CCGCTTGTTGGCTGCGGCTTCTTGGGTAAGTGGTTTTACCAACTCAGCACTTCATTCCTCCTTCACCTTCTGGATACCCCTGTGTGGACACCACCAAGTACATCACTTTTTCTGTGAAGTTCCAGCACTTCTGTGATTATTGTATGTTGATACCCATGCCAATGAGCTGACCCTCATGATCACAAGCTCCGTTTTTGTTCTCATACCTCTCATTCTCATTCTCACTTCTTATGGTGCCATCGTCCAGGCTGTACTGAGGATGCAATCAACCACTGGGCTTCAGAGAGTGTTTGGAACATGTGGAGCCCACCTTATGGTTGTATCTCTCTTTTT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1717513 333 -   2232465 CCACCTGTTGGCTGTGGCTTCTTGGGTAAGTGGTTTTACTGACTCAGCACTTCATACCTTCTTCACCTTCTGGGTACCCCTGTGTGGACATCGCCAAGTGGATCACTTCTTCTGTGAAGTTCCTGCATTGCTGCAACTATCCTGTGTTGATACCCATGCTAATGAGCTGACCCTCATGGTGATGAGCTCCATTTTTGTTCTCATACCTCTCATCCTCATTCTCACTTCCTATGGTGCCATTGCCCGGACTGTACTAAAAATGAAATCAACCACTGGCCTTCAGAAAGTGTTTGCCACCTGTGGAGCCCATCTTATGGTTGTCTCTCTTTTTTT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            297741 333 -    859332 TCACCTGTTGGCTGTGGCTTCTTGGGTAAGTGGCTTTCTTGACTCAGCACTTCATTCCTCTCTTACCTTCTGGGTACCCTTGTGTGGACATCGCCGAGTGGACCACTTCTTCTGTGAAGTTCCAGCACTGCTGCAACTGTCATGTGCTGATACGCATGCTAACAAGGTGACCCTACTGGTCATGAGCTCCTTTTTTGTATTCATACCACTCCTTCTGATTCTCAGTTCCTATGGAGCCATTGCCCAGGTTGTGCTGAAGATGCGGTCCACAGCTGGACTCCAGAAACTCTTTGGGACATGTGGAGCCCATCTTACAGTTGTGGCTCTCTTTTT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138157   1 +  26524999 I
e calJac3.chr4             171588446 375 - 171630274 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=356863.000000
s hg38.chr6_GL000254v2_alt    448014 49 +   4827813 CATTCCGGCCATGTGCATGTATCTCCAGCCACCATCAGGGAATTCTCAA
s panTro5.chr6              29429078 49 + 175400573 CATTCCGGCCATGTGCATGTATCTCCAGCCACCATCAGGGAATTCTCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29664882 49 + 173848474 CATTCCGGCCATGTGCATGTATCTCCAGCCACCATCAGGGAATTCTCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5455436 49 +   6154872 CATTCCGGACATGTGCAGGTATCTCCAGCCACCATCAGGGAATTCTCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29620497 49 + 172585720 CTTTCTGGCCATGTGCATGTATCTCCAGCCACCATCAGGAAATTCTCGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29283550 49 - 170955103 CTTTCTGGCCATGTGCATGTATCTCCAGCCACCATCAGGAAATTCTCGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2292066 49 -   2996164 CTTTCTGGCCATGTGCATATATCTCCAGCCACCATCAGGAAATTCTCGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       16105 49 +    766320 CTTTCTGGCCATGTGCATGTATCTCCAGCCACCATCAGGAAATTCTCGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28524480 49 -  71996105 CATTCCGGCCATGTGCATATATCTCCAGCCACCATCAGGAAATTCTCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2309380 49 +   2316924 CTTTCTGGCCATGTGCATGTATCTCCAGCCACCATCAGGAAATTCTCGA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2109872 49 -   3067355 CATTCCGGCCATGTGCATATATCTCCAGCCACCATCAGGAAATTCTCAA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1717846 49 -   2232465 CATTCCAGCTATGTGTATATATCTCCAGCCATCTTCAGAAAATTCTCAA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35             26138158 49 +  26524999 AACTCCAGCCATGTGCATATATCTGCAGCCACCATTGGGAGATTCTCAA
i canFam3.chr35            I 1 C 0
s dasNov3.JH570037            298074 49 -    859332 CATCCCAGCCATATGCATATATCTCCAGCCACCATCAGAAAATTCTCAA
i dasNov3.JH570037         C 0 C 0
e calJac3.chr4             171588446 375 - 171630274 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=155115.000000
s hg38.chr6_GL000254v2_alt    448063 20 +   4827813 GATCAAGGCAAGTTCATTGC
s panTro5.chr6              29429127 20 + 175400573 GATCAAGGCAAGTTCATTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29664931 20 + 173848474 GATCAAGGCAAGTTCATTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5455485 20 +   6154872 GATCAAGGCAAGTTCATTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29620546 19 + 172585720 GATCAAAGCAAGTTCGTTG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29283599 19 - 170955103 GATCAAAGCAAGTTCGTTG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2292115 19 -   2996164 GATCAAAGCAAGTTCGTTG-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       16154 20 +    766320 GATCAAAGCAAGTTCGTTGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28524529 20 -  71996105 GATCAAGGCAAGTTCATTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2309429 20 +   2316924 GATCAAAGCAAGTTCGTTGC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2109921 20 -   3067355 GATCAAGGCAAGTTCATTGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171588821 20 - 171630274 GATTGAGGCAAGTTTATCGC
i calJac3.chr4             I 375 C 0
s otoGar3.GL873742           1717895 20 -   2232465 AATCAAGGCAAGTTCATTGC
i otoGar3.GL873742         C 0 T 16328
s canFam3.chr35             26138207 20 +  26524999 GATCAAGGCAAGTTCATTGC
i canFam3.chr35            C 0 C 0
s dasNov3.JH570037            298123 20 -    859332 GACCAAGGCAAATTCATTGC
i dasNov3.JH570037         C 0 C 0
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=815039.000000
s hg38.chr6_GL000254v2_alt    448083 102 +   4827813 TCTCTTTTATACTGTTGTTACACCTAGTCTTAAccctctaatctacaccctcagaaacaaagatgtaagaggggtagtgaagagactaaGGGGGTGGGAGTG
s panTro5.chr6              29429147 102 + 175400573 TCTCTTTTATACTGTTGTTACACCTAGTCTTAAccctctaatctacaccctcagaaacaaagatgtaagaggggtagtgaagagactaaGGGGGTGGGAGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29664951 102 + 173848474 TCTCTTTTATACTGTTGTTACACCTAGTCTTAAccctctaatctacaccctcagaaacaaagatgtaagaggggtagtgaagagactaaGGGGGTGGGAGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5455505 102 +   6154872 TCTCTTTTATACTGTTGTTACACCTAGTCTTAAccctctaatctacaccctcagaaacaaagatgtaagaggggtagtgaagagactaaGGGGGTGGGAGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29620565 101 + 172585720 -CTGTTTTATACTGTTGTCACACCTAGTTGTAACCCTATAATCTACACCCTCAGAAACAAAGATGTAAGAGGGCCAATGAAGAGACTAATGGGGTGGGAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29283618 101 - 170955103 -CTGTTTTATACTGTTGTCACACCTAGTTGTAACCCTATAATCTACACCCTCAGAAACAAAGATGTAAGAGGGCCAATGAAGAGACTAATGGGGTGGGAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2292134 101 -   2996164 -CTGTTTTATACTGTTGTCACACCTAGTTGTAACCCTATAATCTATACCCTCAGAAACAAAGATGTAAGAGGGCCAATGAAGAGACTAATGGGATGGGAATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       16174 102 +    766320 TCTGTTTTATACTGTTGTCACACCTAGTTGTAACCCTATAATCTACACCCTCAGAAACAAAGATGTAAGAGGGCCAATGAAGAGACTAATGGGGTGGGAATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28524549 102 -  71996105 CCTCTTTTATACTGTTGTCACACCTAGTCTTAAccctctgatctacaccctcagaaacaaagatgtaagaggggcagtgaagagactaaTGGGGTGGAAGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2309449 102 +   2316924 TCTGTTTTATACTGTTGTCACACCTAGTTGTAACCCTATAATCTACACCCTCAGAAACAAAGATGTAAGAGGGCCAATGAAGAGACTAATGGGGTGGGAATG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2109941 102 -   3067355 TCTGTTTTATACTGTTGTTACACCTAGTCTTAAccctctaatctacaccctcagaaacaaagatgtaagaggggcagtgaagagactaaTGGGGTGGGAGTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171588841 102 - 171630274 TGTCTTTTATACAGTAGTCACACCTAGTCTTAACCCTCTAATCTAGACTCTGAGAAACAAGGATGTAAGAGGAGCAGTGAAGATACTAATGGGGTGGGAGTG
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1701587 102 -   2232465 TCTCTTTTATACTGTTGTCACGCCTAGTCTCAACCCTCTAATCTACACTCTCCGAAACAAAGATGTAAGAGGGGCAGTGAAGAGACTAATAGGGTGGGAGTG
i otoGar3.GL873742         T 16328 I 17490
s canFam3.chr35             26138227 101 +  26524999 CCTCGTTTATACTGTTGTCACACCTAGCCTCAACCCTCTCAGCTACACTCTGAGAAACAAATATGTAAGAGGAGCAGTAAGAAGACTAGTGGAGCAGAAGA-
i canFam3.chr35            C 0 C 0
s dasNov3.JH570037            298143 102 -    859332 CCTTTTTTACACTGTTGTAACACCTAGTCTGAACCCTCTAATCTATACTCTCAGAAATAAAGACATAAGAGGGGCAGTAAAGAGACAAATGGGCTGGGAGTG
i dasNov3.JH570037         C 0 C 0
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=10650.000000
s hg38.chr6_GL000254v2_alt    448185 2 +   4827813 AG
s panTro5.chr6              29429249 2 + 175400573 AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29665053 2 + 173848474 AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5455607 2 +   6154872 AG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29620666 2 + 172585720 AG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29283719 2 - 170955103 AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2292235 2 -   2996164 AG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       16276 2 +    766320 AG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28524651 2 -  71996105 AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2309551 2 +   2316924 AG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2110043 2 -   3067355 AG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171588943 2 - 171630274 AT
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26138328 2 +  26524999 AT
i canFam3.chr35            C 0 C 0
s dasNov3.JH570037            298245 2 -    859332 GG
i dasNov3.JH570037         C 0 I 5899
e otoGar3.GL873742           1701689 17490 -   2232465 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=2248595.000000
s hg38.chr6_GL000254v2_alt    448187 404 +   4827813 CCTGTGTTTGTGTGATATTAACAATATAATGGAGTCTTTCCTCACAATGATTCATCCATCTGTTCATTTATCAACCATTCTTTTATTCACTCACTCTGTTAGCACTTGCTGAGCATGTACTC-TAACAAAGTCGTGGAGATCCTGGTAACAGGTAGGAATAAAACACATTCAGCTTAAATACCATTCACTTT----TGGAGAAAACAGCTGTGTAAAATCAAGATAAAACATCTATAGTGATGTTTTTCCATGGCACAAACCTAATGAATACAAGAAAGACTTTTCCTGATTAAAAA-TAAGGCATGAAATTTGTTGTAAATATTGATAAAAGTGAAGTTATAATTCCTATGAAAAGATGATACTCTCA-ATTTTAAAATATCTAGAATATG-TCTTTTAATTTTTTGCTGT
s panTro5.chr6              29429251 404 + 175400573 CCTGTGTATGTGTGATATTAACAATATAATGGAGTCTTTCCTCACAATGATTCATCCATCTGTTCATTTATCAACCATTCTTTTATTCACTCACTCTGTTAGCACTTGCTGAGCATGTACTC-TAACAAAGTCGTGGAGTTCCTGGTAACAGGTAGGAATAAAACACATTCAGCTTAAATACCATTCACTTT----TGGAGAAAACAGCTGTGTAAAATCAAGATAAAACATCTATAGTGATGTTTTTCCATGGCACAAACCTAATGAATACAAGAAAGACTTTTCCTGATTAAAAA-TAAGGCATGAAATTTGTTGTAAATATTGATAAAAGTGAAGTTATAATTCCTATGAAAAGATGATACTCTCA-ATTTTAAAATATCTAGAATATG-TCTTTTAATTTTTTGCTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29665055 404 + 173848474 CCTGTGTATGTGTGATATTAACAATATAATGGAGTCTTTCCTCACAATGATTCATCCATCTGTTCATTTATCAACCATTCTTTTATTCACTCACTCTGTTAGCACTTGCTGAGCATGTACTC-TAACAAGGTCGTGGAGTTCCTGGTAACAGGTAGGAATAAAACACATTCAGCTTAAATACCATTCACTTT----TGGAGAAAACAGCTGTGTAAAATCAAGATAAAACATCTATAGTGATGTTTTTCCATGGCACAAACCTAATGAATACAAGAAAGACTTTTCCTGATTAAAAA-TAAGGCATGAAATTTGTTGTAAATATTGATAAAAGTGAAGTTATAATTCCTATGAAAAGATGATACTCTCA-ATTTTAAAATATCTAGAATATG-TCTTTTAATTTTTTGCTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5455609 404 +   6154872 CCTGTGTATGTGTGATATTAACAATATAATGGAGTCTTTCCTCACAATGATTCATCCATCTGTTCATTTATCAACCATTCTTTTATTCACTCACTCTGTTAGCACTTGCTGAGCATATACTC-TAATAAAGTCGTGGAGTTCCTGGTAACAGGTAGGAATAAAACACATTCAGCTTAAATACCGTTCACTTT----TGGAGAAAACAGCTGTGTAAAATCAAGATAAAACATCTATAGTGATGTTTTTCCATGGCACAAACCTAATGAATACAAGAAAGACTTTTCCTGATTAAAAA-TAAGGCATGAAATTTGTTGTAAATATTGACAAAAGTGAAGTTATAATTCCTATGAAAAGATAATACTCTCA-ATTTTAAAATATCTAGAATATG-TCTTTTAATTTTTTGCTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29620668 401 + 172585720 CCTGTGTATGTGTGATAGTAACAATAAAATGGAGTCTCTCCTCACAATGATTCATCCATCTGTTTATTTATCAACGATTCTTTTAT----TGACTCTGTTAGTACTTGCTGAGCATGTACTCTTAACAAAGTCATGGAGTTCCTGGTAACAGGTAGGAATAAAACATATTCAGCTTAAACATCATTCACTTG----TGGAGAAAACAGCTATGTAAAATCAAGATAAAACATCTATAGCGATGTTTTTCCATGGCACAAACCTAATGAATCCAAGACAGACTTTTCCTGATTAAAAA-TAAGGCATGAAATTTGTTGTAAATATTGATAAAAGTGAAGTTATAATTCCTATGAAAAGATGATACTCTCA-GTGTAAAAATATCTAGAATATG-TCTTTTAATTTTTTGCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29283721 401 - 170955103 CCTGTGTATGTGTGATAGTAACAATAAAATGGAGTCTCTCCTCACAATGATTCATCCATCTGTTTATTTATCAACGATTCTTTTAT----TGACTCTGTTAGTACTTGCTGAGCATGTACTCTTAACAAAGTCATGGAGTTCCTGGTAACAGGTAGGAATAAAACATATTCAGCTTAAACATCATTCACTTG----TGGAGAAAACAGCTATGTAAAATCAAGATAAAACATCTATAGCGATGTTTTTCCATGGCACAAACCTAATGAATCCAAGACAGACTTTTCCTGATTAAAAA-TAAGGCATGAAATTTGTTGTAAATATTGATAAAAGTGAAGTTATAATTCCTATGAAAAGATGATACTCTCA-GTGTAAAAATATCTAGAATATG-TCTTTTAATTTTTTGCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2292237 401 -   2996164 CCTGTGTATGTGTGATAGTAACAATAAAATGGAGTCTCTCCTCACAATGATTCATCCATCTGTTTATTTATCAACGATTCTTTTAT----TCACTCTGTTAGTACTTGCTGAGCATGTACTCTTAACAAAGTCATGGAGTTCCTGGTAACAGGTAGGAATAAAACATATTCAGCTTAAACATCATTCACTTG----TGGAGAAAACAGCTATGTAAAATCAAGATAAAACATCTATAGCGATGTTTTTCCATGGCACAAACCTAATGAATCCAAGACAGACTTTTCCTGATTAAAAA-TAAGGCATGAAATTTGTTGTAAATATTGATAAAAGTGAAGTTATAATTCCTATGAAAAGATGATACTCTCA-GTGTAAAAATATCTAGAATATG-TCTTTTAATTTTTTGCTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       16278 400 +    766320 CCTGTGTATGTGTGATAGTAACAATAAAACGGAGTCTCTCCTCACAATGATTCATCCATCTGTTTATTTATCAACGATTCTTTTAT----TCACTCTGTTAGTACTTGCTGAGCATGTACTCTTAACAAAGTCATGGAGTTCCTGGTAACAGGTAGGAATAAAACATATTCAGCTTAAACACCATTCACTTG----TGGAGAAAACAGCTATGTAAAATCAAGATAAAACATCTATAGCGATGTTTTT-CATGGCACAAACCTAATGAATCCAAGACAGACTTTTCCTGATTAAAAA-TAAGGCATGAAATTTGTTGTAAATATTGATAAAAGTGAAGTTATAATTCCTATGAAAAGATGATACTCTCA-GTGTAAAAATATCTAGAATATG-TCTTTTAATTTTTTGCTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28524653 393 -  71996105 CCTGTGTACGTGTCATAT-----------TGGAGTCTCCCCTCACAATGATTCATCCTTCCATTTATTTATCAACGATTCTTTTattcactcactctgttagcgcttgctgagcatgtactc-taacaaggtcctggagttcctggtgacaggtatgaataaaacacagtcagcctaaataccattcacttg----tggagaaaacagctatgtaaaATCAAGATAAAACATCTGTAGCGATGTTTTTCCATGGCACAAACCTAATGAATCCAAGACAGACTTTTCTTGATTGAAAA-TAAGGCATGAAATTTGTTGTAAATCTTGATAAAAGTGAAGTTATAATTCCTATGAAAAGATGATACTCTCA-ATTTAAAAATCTCTACAATATG-TCTTTTAATTTCTTGCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2309553 401 +   2316924 CCTGTGTATGTGTGATAGTAACAATAAAATGGAGTCTCTCCTCACAATGATTCATCCATCTGTTTATTTATCAACGATTCTTTTAT----TCACTCTGTTAGTACTTGCTGAGCATGTACTCTTAACAAAGTCGTGGGGTTCCTGGTAACAGGTAGGAATAAAACATATTCAGCTTAAACACCATTCACTTG----TGGAGAAAACAGCTATGTAAAATCAAGATAAAACATCTATAGCGATGTTTTTCCATGGCACAAACCTAATGAATCCAAGACAGACTTTTCCTGATTAAAAA-TAAGGCATGAAATTTGTTGTAAATATTGATAAAAGTGAAGTTATAATTCCTATGAAAAGATGATACTCTCA-GTGTAAAAATATCTAAAATATG-TCTTTTAATTTTTTGCTTT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2110045 404 -   3067355 CCTGTGTACGTGTCATATTAACAATATAATGGAGTCTCCCCTCACAATGATTCATCCTTCTATTTATTTATCAACAATTCTTTTattcactcactctgttagcacttgcttagcatgtactc-taacaaggtcctggagttcctggtgacaggtatgaataaaacacagtcaacctaaataccattcacttg----tggagaaaacagctatgtaaaATCGAGATAAAACATCTATAGCAATGTTTTTCCATGGCACAAACCTAATGAATCCAAGACAGACTTTTGTTGATTGAAAA-TAAGGCATGAAATTTGTTGTAAATCTTGATAAAAGCGAAGTTATAATTCCTATGAAAAGATGATACTCTCA-ATTTAAAAATCTCTACAATATG-GCTTTTAATTTCTTGCTTT
i colAng1.NW_012115566v1   C 0 I 39541
s calJac3.chr4             171588945 400 - 171630274 CCTTTCTACATGTGATATTAACAGTATAATGGAATATCTCCTCACAATGATTCATCCATCTCTTTATTTATCAACCATTCTTTTATTTATTCA--CTGTGAGCACTTGCTGAGCATGTACTT-TAACAAGGTCATGGAGTGCCTGGTAACAGGTATAAATAAAACACAGTAAGCATAAATACCATTCACTTG----TGGAGAAAACAGCTATGTAAAATCGAAGGAAAACATCTATAGCAATGTTTTTCCATGGCACAAACCTAATGAATCCAAGACAGACTTTTCCTGATTGAAAA-TA--GCATGAAATTTGTTGTAAATCTTGATAAAAGCAGAGTTATAATTCCTAGGAAAAGATAATACTTTTATTTTTTTAAATCTCTAGAACATG-TC-TTTAATTTCTTGCCTT
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26138330 361 +  26524999 CCCTTGCATTCATGATCTTCATGAGACAGTGGAGCCCCTCTTCAGCA-GGCGCTTCTCTATATCCATCCATCAGCCACTCTCCTGTTTACTCGCTGTGTCAGCACCAGTGGAGCATGTG-TC-TTGCAAGGCCACAGAGCTCTCGCTCATAGATATAAATTAAGCAGTTT--GTCTAAATATCAATTACTCTCCAATGAAGAAAACAGCCATGTAAAATCAAAATTGAACATCAATATTAA-ATTTTTTCAGAGCA------TAATAAAT----AAAAGTATCCTCTTAATTGAAAATTAAGAAATGA----------------------------------AATTCCAATAGAAAGATGATGTACTTA-GTTTTTAAAAAGCTAGACTGTGATCTTCTAATTTCTCACTTT
i canFam3.chr35            C 0 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e otoGar3.GL873742           1701689 17490 -   2232465 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1633533.000000
s hg38.chr6_GL000254v2_alt    448591 282 +   4827813 TTAGGCAGAAT--------ACTTTTGTCTTCTATCTTTAGTTTAGTTGAATACACAGCAAAATACTTCAAATCCTTTCCTCCAACACTACTTATTTTTTGTTGGAT-GTAAATTTT---GAGAGGAATTTTGGTCCATATTCTTTGATATCCAATATCAATAGTAAGACAATAAGTTTTATAAATTGTAGCAAGAGAGATGTTGAAGCAGTGTAGCAGAAGTCGGCGTCCAAGATCCCTCTTTTTTACAAGGCAGTGAGAAGGATATTGGAGGTGAAAGGAGCTGGTAAAGCTG
s panTro5.chr6              29429655 282 + 175400573 TTAGGCAGAAT--------ACTTTTGTCTTCTATCTTTAGTTTAGTTGAATACACAGCAAAATCCTTCAAATCCTTTCCTCCAACACTACTTATTTTTTGTTGGAT-GTAAATTTT---GAGAGGAATTTTGGTCCATATTCTTTGATATCCAATATCAATAGTAAGACAATAAGTTTTATGAATTGTAGCAAGAGAGACGTTGAAGCAGTGTAGCAGAAGTCAGCGTCCAAGATCCCTCTTTTTTACAAGGCAGTGAGAAGGATATTGGAGGTGAAAGGAGCTGGTAAAGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29665459 282 + 173848474 TTAGGCAGAAT--------ACTTTTGTCTTCTATCTTTAGTTTAGTTGAATACACAGCAAAATCCTTCAAATCCTTTCCTCCAACACTACTTATTTTTTGTTGGAT-GTAAATTTT---GAGAGGAATTTTGGTCCATATTCTTTGATATCCAATATCAATAGTAAGACAATAAGTTTTATGAATTGTAGCAAGAGAGACGTTGAAGCAGTGTAGCAGAAGTCAGCGTCCAAGATCCCTCTTTTTTACAAGGCAGTGAGAAGGATATTGGAGGTGAAAGGAGCTGGTAAAGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5456013 282 +   6154872 TTAGGCAGAAT--------ACTTATGTCTTCTATCTTTAGTTTAGTTGAATACACAGCAAAATACTTCAAATCCTTTCCTCCAACACTACTTATTTTTTGTTGGAT-GTAAATTTT---GAGAGGAATTTTGGTCCATATTCTTTGATATCCAATATCAATAGTAAGACAATAAGTTTTATGAATTGTAGCAAGAGAGACGTTGAAGCAGTGTAGTAGAAGTCGGCGTCCAAGATCCCTCTTTTTTACAAGGCAGTGAGAAGGATATTGGAGGTGAAAGGAGCTGGTAAAGCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29621069 279 + 172585720 TTGGGCAGAAT--------ACTTTTGTCTTCTATCTTTAGTTTAGTTGAATACACAGCAAAATACTTCAAATCCTTTCCTCCAACACTCCTTATTCTTTGTTGGATAGTAAATTTT---GAGAGGAATTTTGGTCCATATTCTTTGATATCCAATATCAATAGTAAGACAATAAGTTTTATGAATTGTAGCAAGAGACATGTTGAAGCAGTGTAGCAGAAGTCGGCATCTGAGATCCCTCTTTTTTGCAAGGCAGTGA----TATATTGGAGGTGAAAGGAGCTGGTAAAGCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29284122 279 - 170955103 TTGGGCAGAAT--------ACTTTTGTCTTCTATCTTTAGTTTAGTTGAATACACAGCAAAATACTTCAAATCCTTTCCTCCAACACTCCTTATTCTTTGTTGGATAGTAAATTTT---GAGAGGAATTTTGGTCCATATTCTTTGATATCCAATATCAATAGTAAGACAATAAGTTTTATGAATTGTAGCAAGAGACATGTTGAAGCAGTGTAGCAGAAGTCGGCATCTGAGATCCCTCTTTTTTGCAAGGCAGTGA----TATATTGGAGGTGAAAGGAGCTGGTAAAGCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2292638 279 -   2996164 TTGAGCAGAAT--------ACTTTTGTCTTCTATCTTTAGTTTAGTTGAGTACACAGCAAAATACTTCCAATCCTTTCCTCCAACACTCCTTATTCTTTGTTGGATAGTAAATTTT---GAGAGGAATTTTGGTCTATATTCTTTGATATCCAATATCAATAGTAAGACAATAAGTTTTATGAATTGTAGCAAGAGACATGTTGAAGCAGTGTAGCAGAAGTTGGCATCTGAGATCCCTCTTTTTTGCAAGGCAGTGA----TATATTGGAGGTGAAAGGAGCTGGTAAAGCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       16678 279 +    766320 TTGGGCAGAAT--------ACTTTTGTCTTCTATCTTTAGTTTAGTTGAATACACAGCAAAATACTTCAAATCCTTTCCTCCAACACTCCTTATTCTTTGTTGGATAGTAAATTTT---GAGAGGAATTTTGGTCCATATTCTTTGATATCCAATATCAATAGTAAGACAATAAGTTTTATGAATTGTAGCAAGAGACATGTTGAAGCAGTGTAGCAGAAGTCGGCATCTGAGATCCCTCTTTTTTGCAAGGCAGTGA----TATATTGGAGGTGAAAGGAGCTGGTAAAGCTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28525046 283 -  71996105 TTGGGCAGAAT--------ACTTTTCTCTTCTATCTTTAGTTTAGTTGAATACACAGCAAAATACTTCAAATCCTTTTCTCCAACACTGCTTTTTCTTTGTTGGATAGTAAATTTT---GAGAGGAATTTTGGTCCATATTCTTTCATAGCCAATATCAATAGTAGGACGATAAGTTTTATGAATTGTAGCAAGAGAGTCTTTGAAGCAGTGTAGCAGAAGTCAGCATCTGAGATCCCTCTTTTTTGCAAGGCAGTGAGAAGTATACAGGAAGTAAAAGGGGCTGGTAAAGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2309954 276 +   2316924 TTGGGCAGAAT--------ACTTTTGTCTTCTATCTTTAGTTTAGTTGAATACACAGCAAAATACTTCAAATCCTTTCCTCCAACACTCCTTATTCTTTGTTGGATAGTAAATTTT---GAGAGGAATTTTGGTCCATATTCTTTGATATCCAATATCAATAGTAAGACAATAAGTTTTATGAATTGTAGCAAGAGACATGTTGAAGCAGTGTAGCAGAAGTCGGCATCTGAGATCCCTCTTTTTTGCAAGGCAGTGA----TATATTGGAGGTGAAA---GCTGGTAAAGCTG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2149990 279 -   3067355 TTAGGCAGAAT--------ACTTTTGTCTTCCATCTTTAGTTTAGTTGAATACACAGCAAAATACTTCAAATCCTTTCCTCCAACACTACTTATTCTTTGTTGGATAGTAAATTTT---GAGAGGAATTTTGGTCCATATTCTTTGATATCCAATATCAATAGTAAGACAATAAGTTTTATGAATTGTAGCAAGAGACACGTTGAAGCAGTGTAGCAGAAGTCAGCATCTGAGATCCCTCTTTTTTGCAAGGCAGTGA----TATATTGGAGGTGAAAGGAGCTGGTAAAGCTG
i colAng1.NW_012115566v1   I 39541 C 0
s calJac3.chr4             171589345 275 - 171630274 TTAGGCAGAAT--------GCTTTTGACTTCTATC-----TTTAGTTAAATACACAGCAAAATACTTTAAATCTTTTTCTCCAACACCGCTTGTTCTTTGTTGGATAGTAAATTTT---GAGAGGAATTTTGGTCCATATTCTTTCATATCCAGTATCAATCGTAAGATAATAAGTTTTATGAATTGTATCAAGAGAGGCTTTGAAGCAGTGT---AGAAGTTGGCATTTGAGATCCCTCTTTCTTGCAAGGCAGTGAGAAGCATATAGGAAGTGACAAGAGCTGGTAAAGCTG
i calJac3.chr4             C 0 C 0
s canFam3.chr35             26138691 283 +  26524999 TATGGGAGAATTTGCCATAAAATTAGTTTTCTATTTTTGGTTTAGCTAAAGACATGTTGAAATCCCTTGAATC-TTTTCTGCATCACTG-TTAGTCTTTATTGAGTAGTGGTTTTGATAGAGAGGAATTTTGTTCTGTATTTT--------CATTATCAATAGTAAGAAAATAAATTGTATGAATTATAGGAAGAATATCCCTGAAGTAATG-AACAAACATAAGCATCCTGTATTTCTCTCTTTCTTGAGGCAGTGGAAAGTGTATAGGAGGCATAAATCACTTATAGAGGTG
i canFam3.chr35            C 0 I 64429
e dasNov3.JH570037            298247 5899 -    859332 I
e otoGar3.GL873742           1701689 17490 -   2232465 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=3177126.000000
s hg38.chr6_GL000254v2_alt    448873 591 +   4827813 ACCTATGTAGCTTATAAAGAAATGGTCATCACCGTCTAGGTATACTTAGGTGAGGTAAGTGCTTGGAGCAACTGCATTACCTAAAGAGCTATGGAGAACATTTGAGGCAAATAGAG----AGGCTCTGAAAATGACTTGAAGTCAATGGGTGTATAAAAGAATTATGTTTAAATATACTGGAAAATTTTTATGATAAAAGCTGTTATATGGAAAATGTTAGtttatttttatttttaagtttgttctaatttgaatatttatagttaataagtatattAGGAATATCAATATATG-GTTTCAAAT----AAATATATTTTATAGAAGTTATCATTTTGTTCTATATATTATTGTCAACCATCTTCATCTGAAATAATTGCGTTATACCTAGAGCAATTTAAACTGACAGTCATAGTCAAATGATGTGGAAAAATGACTAAAGGAGAATTCAGTATAATGTAACGTACTTGCAATGCCTGAGTTTTCTCTATAACTGGAATGTCAGCTGTAGCTTTTGAGGCCTGTGAGATTTGGATGTGATTGATTCACACACTATTTCCTAAATTATAAAAATAAAAATGCATCTCGGAACTTCCCTCC
s panTro5.chr6              29429937 595 + 175400573 ATCTATGTAGCTTATAAAGAAATGGTCATCACCGTCTAGGTATACTTGGGTGAGGTAAGTGCTTGGAGCAACTGCATTACCTAAAGAGCTATGGAGAACATTTGAGGCAAATAGAG----AGGCTCTGAAAATGACTTGAAGTCAATGGGTGTATAAAAGAATTATGTTTAAATATACTGGAAAATTTTTATGATAAAAGCTGTTATATGGAAAATGTTAGTTTGTTTTTATTTTTAAGCTTGTTCTAATTTGAATATTTATAGTTAATAAGTATATTAGGAATATCAATATATG-GTTTCAAATAAAGAAATATATTTTATAGAAGTTATCATTTTGTTCTATATATTATTGTCAACCATCTTCATCTGAAATAATTGCCTTATACCTACAGCAATTTAAACTGACAGTCATAGTCAAATGATGTGGAAAAATGACTAAAGGAGAATTCAGTATAATGTAACGTACTTGCAATGCCTGAGTTTTCTCTATAACTGGAATGTCAGCTGTAGCTTTTGAGGCCTGTGAGATTTAGATATGATTGATTCACACACTATTTCCTAAATTATAAAAATAAAAATGCATCTCGGAACTTCCCTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29665741 592 + 173848474 ATCTATGTAGCTTATAAAGAAATGGTCATCACCGTCTAGGTATACTTGGGTGAGGTAAGTGCTTGGAGCAACTGCATTACCTAAAGAGCTATGGAGAACATTTGAGGCAAATAGAG----AGGCTCTGAAAATGACTTGAAGTCAATGGTTGTATAAAAGAATTATGTTTAAATATACTGGAAAATTTTTATTATAAAAGCTGTTATATGGAAAATGTTAGtttatttttatttttaagcttgttctaatttgaatatttatagttaataagtatattAGGAATATCAATATATG-GTTTCAAATAAAGAAATATATTTTATAGAAGTT---ATTTTGTTCTATATATTATTGTCAACCATCTTCATCTGAAATAATTGCCTTATACCTACAGCAATTTAAACTGACAGTCATAGTCAAATGATGTGGAAAAATGACTAAAGGAGAATTCAGTATAATGTAACGTACTTGCAATGCCTGAGTTTTCTCTATAACTGGAATGTCAGCTGTAGCTTTTGAGGCCTGTGAGATTTAGATATGATTGATTCACACACTATTTCCTAAATTATAAAAATAAAAATGCATCTCGGAACTTCCCTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5456295 595 +   6154872 ATCTATGTAGCTTATAAAGAAATGGTCATCACAGGCTAGGTATACTTAGGTGAGGTAAGTGCTTGGAGCAACTGCATTACCTAAAGAGCTATGGAGAACATTTGAGGCAAATAGAG----AAGCTCTGAAAATGACTTGAAGTCAATGGGTGTATAAAAGAATTATGTTTAAATATACTGAAAAATTTTTATGATAAAAGCTGTTATATGGAAAATGTTAGtttatttttatttttaagcttgttctaatttgaatatttatagttaataagtatattAGGAATATCAATATATG-GTTTCAAATAAAGAAGTATATTTTATAGAAGTTATCATTTTGTTCTATATATTATTGTCAACCATCTTCATCTGAAATAATTGCGTTATACCTAGAGCAATTTAAACTGACAGTCATAGTCAAATGATGTGGAAAAATGACTAAAGGAGAATTCAGTATAATGTAACGTACTTGCAATGCCTGAGTTTTCTCTATAACTGGAATGTCAGCTGTAGCTTTTGAGGCCTGTGAGATTTGGATATGATTGATTCACACACTATTTCCTAAATTATAAAAATAAAAATGCATCTCGGAACTTCCCTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29621348 595 + 172585720 ATCTATGTAGCTTACAAAGAAATGGTCATCACCGGCTAGATATACTTAAGTGAGGTAAGTGCTTGGAACAACTGCATTACCTAAAGAGCTATGGAGAACATTTGAGGCAAATAGAA----AGGCTCTGAAAATAACTTGAAATCAATGGGTATGTAAAAGAATTATGTTTAAATATATTGGAAAAATTTTATGATAAAAGCTGTTATATGGAAAATGTTAGtttatttttatttttaagcttgttgtaatttgaatatttatagttaataagtatattAGGAATGTCAATATATG-GTGTCAAATAAAGAAATATATTTTATAGAAGTTATCATTTTGTTCTATATATTATTGCCAACCATCTTCATCTGAAATAATTGTGCCATACCTAGAGCAATTTAAACTGACAGTCATAGTCAAATGACGTGGAAAAATGACTAAAGGAGAATTCAGGATAATGTAACATACTTGCAATGCCTGAGTTTTCTCTATAACTTGAATGTCAGCTGTAGCTTTTGAGGCCTGTGAGATTTGGATATGATTGATTCACACACTATTTCCTAAATTATAAAAATAAAAATGTATCTTGGAACTTCTCTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29284401 595 - 170955103 ATCTATGTAGCTTACAAAGAAATGGTCATCACCGGCTAGATATACTTAAGTGAGGTAAGTGCTTGGAACAACTGCATTACCTAAAGAGCTATGGAGAACATTTGAGGCAAATAGAA----AGGCTCTGAAAATAACTTGAAATCAATGGGTATGTAAAAGAATTATGTTTAAATATATTGGAAAAATTTTATGATAAAAGCTGTTATATGGAAAATGTTAGtttatttttatttttaagcttgttgtaatttgaatatttatagttaataagtatattAGGAATGTCAATATATG-GTGTCAAATAAAGAAATATATTTTATAGAAGTTATCATTTTGTTCTATATATTATTGCCAACCATCTTCATCTGAAATAATTGTGCCATACCTAGAGCAATTTAAACTGACAGTCATAGTCAAATGACGTGGAAAAATGACTAAAGGAGAATTCAGGATAATGTAACATACTTGCAATGCCTGAGTTTTCTCTATAACTTGAATGTCAGCTGTAGCTTTTGAGGCCTGTGAGATTTGGATATGATTGATTCACACACTATTTCCTAAATTATAAAAATAAAAATGTATCTTGGAACTTCTCTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2292917 591 -   2996164 ATCTATGTAGCTTACAAAGAAATGGTCATCACCGGCTAGATATACTTAAGTGAGGTAAGTGCTTGGAACAACTGCATTACCTAAAGAGCTATGGAGAACATTTGAGGCAAATAGAA----AGGCTCTGAAAATAACTTGAAATCAATGGGTATGTAAAAGAATTATGTTTAAATATATTGGAAAAATTTTATGATAAAAGCTGTTATATGGAAAATGTTAGtttatttttatttttaagcttgttgtaatttgaatatttatagttaataagtatattAGGAATGTCAATATATG-GTGTC----AAAGAAATATATTTTATAGAAGTTATCATTTTGTTCTATATATTATTGCCAACCATCTTCATCTGAAATAATTGTGCCATACCTAGAGCAATTTAAACTGACAGTCATAGTCAAATGACGTGGAAAAATGACTAAAGGAGAATTCAGGATAATGTAACATACTTGCAATGCCTGAGTTTTCTCTATAACTTGAATGTCAGCTGTAGTTTTTGAGGCCTGTGAGATTTGGATATGATTGATTCACACACTATTTCCTAAATTATAAAAATAAAAATGTATCTTGGAACTTCTCTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       16957 595 +    766320 ATCTATGTAGCTTACAAAGAAATGGTCATCACTGGCTAGATATACTTAAGTGAGGTAAGTGCTTGGAACAACTGCATTACCTGAAGAGCTATGGAGAACATTTGAGGCAAATAGAA----AGGCTCTGAAAATAACTTGAAATCAATGGGTATGTAAAAGAATTATGTTTAAATATATTGGAAAAATTTTATGATAAAAGCTGTTATATGGAAAATGTTAGtttatttttatttttaagcttgttgtaatttgaatatttatagttaataagtatattAGGAATGTCAATATATG-GTGTCAAATAAAGAAATATATTTTATATAAGTTATCATTTTGTTCTATATATTATTGCCAACCATCTTCATCTGAAATAATTGTGCCATACCTAGAGCAATTTAAACTGACAGTCATAGTCAAATGACGTGGAAAAATGACTAAAGGAGAATTCAGGATAATGTAACATACTTGCAATGCCTGAGTTTTCTCTATAACTTGAATGTCAGCTGTAGCTTTTGAGGCCTGTGAGATTTGGATATGATTGATTCACACACTATTTCCTAAATTATAAAAATAAAAACACATCTTGGAACTTCTCTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28525329 590 -  71996105 AGCTATGTAGCTTATAAAGAAATGGTCATCATAGGTTTGGTACACTTAGGTGAGGTAAATGCTTGGAGCAACTGCATAACCTAAGGAACTATGGAGAACATTTGAGGCAAATAGAGCGCTAGGCTCTGAAAATGACTTGAAGCAAATGGGCGTATGAATGAATTATGTGAAAATATATTGGAAACATTTTATGATACAAGCTGTCATATGGAAAATGATAGTTTACTTTTACTTTAAAGCTTGATCTAATTTGAATATTTATGGTTAATAAGTATATTATGTATGTCAATATATGTGTTTCAAAT----AAATATATTTCATAGAAGTTGTTGTTTTGTTCTATATATTATTGTCAACCATCTTCATCTGAAATAATGGTGCTATACCTAGAGCAATTTAAACTGAC------AGTCAAATGAAGTGGAAAAATTACTAAAGGAGAATTCACTATAAAGTAACATACTTGCAATCCCTGAGTTTTCTGTATAACTCAAATGTCAGCTGTAGCTTTTGAGGCCTGTGAAATTTAGATATGATTGATTCGCACACGGTTTCCTAAATTATAAAAATAAAAACACATCTCGGAACTTCCCTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2310230 595 +   2316924 ATCTATGTAGCTTACAAAGAAATGGTCATCACTGGCTAGATATACTTAAGTGAGGTAAGTGCTTGGAACAACTGCATTACCTAAAGAGCTATGGAGAACATTTGAGGCAAATAGAA----AGGCTCTGAAAATAACTTGAAATCAATGGGTATGTAAAAGAATTATGTTTAAATATTTTGGAAAAATTTTATGATAAAAGCTGTTATATGGAAAATGTTAGtttatttttatttttaagcttgttgtaatttgaatatttatagttaataagtatattAGGAATGTCAATATATG-GTGTCAAATAAAGAAATATATTTTATAGAAGTTATCATTTTGTTCTATATATTATTGCCAACCATCTTCATCTGAAATAATTGTGCCATACCTAGAGCAATTTAAACTGACAGTCATAGTCAAATGACGTGGAAAAATGACTAAAGGAGAATTCAGGATAATGTAACATACTTGCAATGCCTGAGTTTTCTCTATAACTTGAATGTCAGCTGTAGCTTTTGAGGCCTGTGAGATTTGGATGTGATTGATTCACACACTATTTCCTAAATTATAAAAATAAAAACACATCTCGGAACTTCTCTCC
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2150269 595 -   3067355 ATCTATGTAGCTTACAAAGAAATGGTCACCATCAGCTAGATATACTTAAGTGAGGTAAGTGCTTAGAACAACTGCATTACCTAAAGAGTTATGGAGAACATTTGAGGCAAATAGAA----AGGCTCTGAAAATAACTTGAAGTCAATGGGTGTATACAAGAATTATGTTTCAATATATTGGAAAAATTTTATGATAAAAGCTGTTATATGGAAAATGTTAGTTTATTTTTATTTTTAAGCTTGTTCTAATTGGAATATTTATAGTTAATAAGTATATTAGGAATGTCAATATATG-GTGTCAAATAAAGAAATATATTTTATAGAAGTTATCATTTTGTTCTATATATTGTTGCCAAGCATCTTCATCTGAAATAATTGTGCTATACCGAGAGCAATTTAAACTGACAGTCATAGTCCAATGACATGGAAAAATGACTAAGGGAGAATTCAGGATAATGGAACGTACTTGCAATGCCTGAGTTTTCTCTATAACTCGAATGTCAGCTGTAGCTTTTGAGGCCTGTGAGATTTGGATATGATTGATTCACACACCATTTCCTAAATTATAAAAATAAAAACGGATCTCGGAACTTCTCTCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171589620 579 - 171630274 AGCTGTGTGTTTCATAAAGGAATGGTCATCACAGGCGAGGCATACTTAGGTGAAGTAAGTGATTGGAGCAACTGCATAACCTAAGGATCTATGGAGAACATTTGAGGCAAATAGAGAGCTAGGCTCTGAAAATGACTTCAAGCCAAGGGATGTATGAAAGGATTATGTGAAAATATACTGGAAAAATTTTATGATAAAAGCTGTTATGTGTAAAATATTAGTTTATTTTT------AAGCTTGACCTAATTTGAATATTAATGATTACTAAGT-CAATATGAATGTCAGTATATGTGTTTCAGATAAAGAAATGTATTTTATAGAAGTTATCATTTTGTTCTATATATTATTGTCAACCATCTCCATCTGAAATAATTGTACTATACATAGAGCAGTTTAAACTGATAGTCATATTCAAATG-------------ACTAAAGGAGAATTCAGTATTAAGTAACATGCTTGCAATGCCTGAGTTTTCTCTGTAACTCCAGTGTCAGCTCTTGC-TTTGAGGCCTGTGAGATTTAGATATGATTGATTCACACGCTACTTCCTAAATTATGAAAATAAAAACACATCCCAGAACTTCCCTCC
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1701689 17490 -   2232465 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=909308.000000
s hg38.chr6_GL000254v2_alt    449464 139 +   4827813 AATTTCTAGTGTGACTTGCAATTGCATTGATTCTGCTGACTTTATCTTCTTTCTGCATCTGTGACTCTTCCTTTATTTCTAACTAGGCATGAAAAAT-ATGAGTCATTTG-CCCTTGTCCTTAAGCT--TACCCAAGAAATGA
s panTro5.chr6              29430532 139 + 175400573 AATTTCTAGTGTGACTTGCAATTGCATTGATTCTGCTGACTTTATCTTCTTTCTGCATCTGTGACTCTTCCTTTATTTCTAACTAGGCATGAAAAAT-ATGAGTCATTTG-CCCTTGTCCTTAAGCT--TACCCAAGAAATGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29666333 139 + 173848474 AATTTCTAGTGTGACTTGCAATTGCATTGATTCTGCTGACTTTATCTTCTTTCTGCATCTGTGACTCTTCCTTTATTTCTAACTAGGCATGAAAAAT-ATGAGTCATTTG-CCCTTGTCCTTAACCT--TACCCAAGAAATGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5456890 139 +   6154872 AATTTCTAGTGTGACTTGCAATTGCATTGATTCTGCTGACTTTATCTTCTTTCTGCATCTGTGACTCTTCCTTTATTTCTAACTAGGCATGAAAAAT-ATGAGTCATTTG-CCCTTGTCCTTAAGCT--TACCCAAGAAATGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29621943 139 + 172585720 AATTTCTAGTGTGACTTGCAATTGCATTGATTCTGCTGACTTTATCTTCTTTCTACATCTGTGACTCTTCCTTTATTTCTAACTAGGCATGaaaaat-atgagtcatgtg-cccttgtccttaagct--tacccaagaaatga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29284996 139 - 170955103 AATTTCTAGTGTGACTTGCAATTGCATTGATTCTGCTGACTTTATCTTCTTTCTACATCTGTGACTCTTCCTTTATTTCTAACTAGGCATGAAAAAT-ATGAGTCATGTG-CCCTTGTCCTTAAGCT--TACCCAAGAAATGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2293508 139 -   2996164 AATTTCTAGTGTGACTTGCAATTGCATTGATTCTGCTGACTTTATCTTCTTTCTACATCTGTGACTCTTCCTTTATTTCTAACTAggcacgaaaaat-atgagtcatgtg-cccttgtccttaagct--tacccaagaaatga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       17552 139 +    766320 AATTTCTAGTGTGACTTGCAATTGCATTGATTCTGCTGACTTTATCTTCTTTCTGCATCTGTGACTCTTCCTTTATTTCTAACTAGGCATGaaaaat-atgagtcatgtg-cccttgtccttaagct--tacccaagaaatga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28525919 139 -  71996105 AATTTCTAGTGTGACTTGCAATTGCATTGATTCTGCTGACTTTATCTTCCTTCTGCATCTGTGACTCTTCCTTTATTTCTAACTAGGCATGAAAAAT-ATGAGGCATGTG-CCCTTGTCCTTAAGCT--TACCCAAGAAATGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2310825 139 +   2316924 AATTTCTAGTGTGACTTGCAATTGCATTGATTCTGCTGACTTTATCTTCTTTCTGCATCTGTGACTCTTCCTTTATTTCTAACTAGGCATGaaaaat-atgagtcatgtg-cccttgtccttaagct--tacccaagaaatga
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2150864 139 -   3067355 AATTTCTAGTGTGACTTGCAATTGCATTGATTCTGCTGACTTTATCTTCTTTCTGCATCTGTGACTCTTCCTTTATTTCTAACTAGGCATGAAACAT-ATGAGTCATGTG-CCCTTGTCCTTAAGCT--TACCCAAGAAATGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171590199 139 - 171630274 AATTTCTAATGTGACTTGCAATTGCATTGATTCTGCTGACTTTTCCTTCTTTCTGCATCTGTGACTCTTCCTTTATTTCTAACGAGGCATGAAAAAT-ATGAGGTATGTG-CCTTTGTCCTTAACCT--TACCCAGGAAATGA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1719179 136 -   2232465 AATTTCCTGTGTGGCTGGCAATTACATTGATTCTGCTGACTTTG---TCTTTCTGCATCTGTGA----TTCTTTATCTCCAACGAGGCATGAAAAACAATGTGGCGTACATCCCTTGTCTTTAGCCTGCCACCTAAGAAATaa
i otoGar3.GL873742         I 17490 I 636
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1109936.000000
s hg38.chr6_GL000254v2_alt    449603 211 +   4827813 AGAACCAAGAATAGTGTATGTAAAATAACTTCTAGTAAACAATTGAGACCACTTAGGGTAAAACATCACATAAAAACAAATTTTTTAAAACTTAAAGAACATAGCTTAGCTCTTTGAACTATTTCCTACTATGGAAATCTTACGATTTGTAACACTTCCTGTAGCATCCTGGTTTCTCACCTACTCAAATATCCTCTC--CATCTTTAT-----------TAAG
s panTro5.chr6              29430671 216 + 175400573 AGAACCAAGAATAGTGTATGTAAAATAACTTTTAGTAAACAATTGAGACCACTTAGGGTAAAACATCAAATAAAAACAAATTTTTTAAAACTTAAAGAACATAGCTTAGCTCTTTGAACTATTTCCTACTATGGAAATCTTACGATTTGTAACACTTCCTGTAGCATCCTGGTTTCTCACCTACTCAAATATCCTCTC--CATCTTTAT------TAAgataag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29666472 216 + 173848474 AGAACCAAGAATAGTGTATGTAAAATAACTTTTAGTAAACAATTGAGACCACTTAGGGTAAAACATCAAATAAAAACAAATTTTTTAAAACTTAAAGAACATAGCTTAGCTCTTTGAACTATTTCCTACTATGGAAATCTTACGATTTGGAGCACTTCCTGTAGCATCCTGGTTTCTCACCTACTCAAATATCCTCTC--CATCTTTAT------TAAgataag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5457029 216 +   6154872 AGAACCAAGAATAGTGTATGTAAAATAACTTTTAGTAAACAATTGAGACCACTTAGGGTAAAACATCACATAAAAACAAATTTTTTAAAACTTAAAGAACATAGCTTAGCTCTTTGAACTATTTCCTACTATGGAAATCTTATGATTTGTAACACTTCCTGTAGCATCCTGGTTTCTCACCTACTCAAATATCCCCTC--CATCTTTAT------TAAgataag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29622082 210 + 172585720 agaaccaagaataatgtatgtaaaataacttttagtaaacaattgagaccacataGGGTAAAACATCACATAAAAACACATTTTTAAAAACTTAAAGAACATAACTTAGCTCTTTGAACTATTTCCTACTATGGAAATCTTACTTTTTGGAACACTTCCTGTAGCATCCTCGTTTCTCACCTACTCAAATAT-CTCCC--CATCTTTAT------TAAG-----
i rheMac8.chr4             C 0 I 6
s macFas5.chr4              29285135 210 - 170955103 AGAACCAAGAATAATGTATGTAAAATAACTTTTAGTAAACAATTGAGACCACATAGGGTAAAACATCACATAAAAACACATTTTTAAAAACTTAAAGAACATAACTTAGCTCTTTGAACTATTTCCTACTATGGAAATCTTACTTTTTGGAACACTTCCTGTAGCATCCTCGTTTCTCACCTACTCAAATAT-CTCCC--CATCTTTAT------TAAG-----
i macFas5.chr4             C 0 I 6
s macNem1.NW_012011356v1     2293647 210 -   2996164 agaaccaagaataatgtatgtaaaataacttttagtaaacaattgagaccacataGGGTAAAACATCACATAAAAACACATTTTTAAAAACTTAAAGAACATAACTTAGCTCTTTGAACTATTTCCTACTATGGAAATCTTACTTTTTGGAACACTTCCTGTAGCATCCTCGTTTCTCACCTACTCAAATAT-CTCCC--CATCTTTAT------TAAG-----
i macNem1.NW_012011356v1   C 0 I 6
s cerAty1.NW_012002711v1       17691 210 +    766320 agaaccaagaataatgtatgtaaaataacttttagtaaacaattgagaccacataGGGTAAAACATCACATAAAAACACATTTTTAAAAACTTAAAGAACATAGCTTAGCTCTTTGAACTATTTCCTACTATGGAAATCTTACTTTTTGGAACACTTCCTGTAGCATCCTCGTTTCTCACCTACTCAAATAT-CTCCC--CATCTTTAT------TAAG-----
i cerAty1.NW_012002711v1   C 0 I 6
s chlSab2.chr17             28526058 210 -  71996105 AGAACCAAGAATCGTGTATGTAAAATAACTTTTAGCAAACAATTGGGACCACGTAGGGTAAAACATCACATAAAAACACATTTTTAAAAACTTAAAGAACATAGCTTAGCCCTTTGAACTCTTTTCTACTGTGGAAATTTTATGATTTGGAACACTTCCTGTAGCATCCTAGTTTCTCACCTACTAAAATCA-CCCCC--CATCTTTAT------TAAG-----
i chlSab2.chr17            C 0 I 15
s manLeu1.NW_012104165v1     2310964 210 +   2316924 agaaccaagaataatgtatgtaaaataacttttagtaaacaattgagaccacataGGGTAAAACATCACATAAAAACACATTTTTAAAAACTTAAAGAACATAGCTTAGCTCTTTGAACTATTTCCTACTATGGAAATCTTACTTTTTGGAACACTTCCTGTAGCATCCTCGTTTCTCACCTACTCAAATAT-CTCCC--CATCTTTAT------TAAG-----
i manLeu1.NW_012104165v1   C 0 I 6
s colAng1.NW_012115566v1     2151003 210 -   3067355 AGAACCAAGAATAATGTATGTAAAATAACTTTTAGTAAACAATTGAGACCACATAGGGCAAAACATCACATAAAAGCAAATTTTTAAAAACTTAAAGAACATAGCTTAGCTCTTTGAACTATTTCCTACTATGGAAATCTTATGATTTGGAACACTTCCTGTAGCATCCTGGTTTCTCACCTACTCAAATAT-CTCCC--CATCTTTAT------TAAG-----
i colAng1.NW_012115566v1   C 0 I 6
s calJac3.chr4             171590338 216 - 171630274 AGAACCAAGAATGATGTACATAAAATAACTTTCAGTAAGCAATTGGGATCACATAGGGTAAAACATCACATAAAAACAAACTTTTAAAAACTTATAGAACATAGCTTAG--CTTTGAACTATTTTCTGCTATGGAAATCTTATGATTCAAATCACTTCCTGTAGCATCCTGGTTTCTCACCTATGAAACCCC-CCCCCCACATCtttataatggataag-----
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=56575.000000
s hg38.chr6_GL000254v2_alt    449814 12 +   4827813 -TGaaaagttgta
s panTro5.chr6              29430887 12 + 175400573 -tgaaaagttgta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29666688 12 + 173848474 -tgaaaagttgta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5457245 12 +   6154872 -tgaaaagttgta
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29622298 12 + 172585720 -tgaaaagttgta
i rheMac8.chr4             I 6 C 0
s macFas5.chr4              29285351 12 - 170955103 -tgaaaagttgta
i macFas5.chr4             I 6 C 0
s macNem1.NW_012011356v1     2293863 12 -   2996164 -tgaaaagttgta
i macNem1.NW_012011356v1   I 6 C 0
s cerAty1.NW_012002711v1       17907 12 +    766320 -tgaaaagttgta
i cerAty1.NW_012002711v1   I 6 C 0
s manLeu1.NW_012104165v1     2311180 12 +   2316924 -tgaaaagttgta
i manLeu1.NW_012104165v1   I 6 C 0
s colAng1.NW_012115566v1     2151219 12 -   3067355 -tgaaaagttgta
i colAng1.NW_012115566v1   I 6 C 0
s calJac3.chr4             171590554 13 - 171630274 tgaaaaaattgta
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e chlSab2.chr17             28526268 15 -  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=3584180.000000
s hg38.chr6_GL000254v2_alt    449826 663 +   4827813 tttatttatgatatacagcataaagttttgatatatgtataattatgcaattattattcaagctaattaacaaatcattaactcacatacttacctgttttgtggtgagaacatttaggatctgttatcttagcaattttcaagtatgcagtacagttttattaactatagt---caccatactatagaatagatctcttgaatttattccttctaactgaaactttgtaccctttgaccagcatctccccattttc----cc----tccctccactgctaacccctgacaagcctcattctactactttgtgcttctatgagttcattttatgtagatttcacacattagatcgtgcagtatttatttttctgtgcctggctcattttacttagcaaagtgtcctcaggtttgccatgtgtttgaaaatattaggacttccttcttattttaaggcagaatagtattctattg--tatataaactacactttttaaattcactcattcattgattgactcttagattgattcaatactttggctattatgaatttgctgccatattcatggaagtggagatagctcttcaacatagtgatttaattcttttggatataaacccagaagtgtgattgatggatcatatggcagttctatt----tttatttatt----attaat
s panTro5.chr6              29430899 663 + 175400573 tttatttatgatatacagcataaagttttgatatatgtataattatgcaattattattcaagctaattaacaaatcattaactcacatacttacctgttttgtggtgagaatatttaggatctgttatcttagcaattttcaagtatgcagtacagttttattaactatagt---caccatactatagaatagatctcttgaatttattccttctaactgaaactttgtaccctttgaccagcatctccccattttc----cc----tccctccactgctaacccctgacaagcctcattctactactttgtgcttctatgagttcattttatgtagatttcacacattagatcgtgcagtatttatttttctgtgcctggctcattttacttagcaaagtgtcctcaggtttgccatgtttttgaaaatattaggacttccttcttattttaaggcagaatagtattctattg--tatataaactacactttttaaattcactcattcattgattgactcttagattgattcaatactttggctattatgaatttgctgccatattcatggaagtggagatagctcttcaacatagtgatttaattcttttggatataaacccagaagtgtgattgatggatcatatggcagttctatt----tttatttatt----attaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29666700 667 + 173848474 tttatttatgatatacagcataaagttttgatatatgtataattatgcaattattattcaagctaattaacaaatcattaactcacatacttacctgttttgtggtgagaatatttaggatctgttatcttagcaattttcaagtatgcagtacagttttattaactatagt---caccatactatagaatagatctcttgaatttattccttctaactgaaactttgtaccctttgaccagcatctccccattttc----cc----tccctccactgctaacccctgacaagcctcattctactactttgtgcttctatgagttcattttatgtagatttcacacattagatcgtgcagtatttatttttctgtgcctggctcattttacttagcaaagtgtcctcaggtttgccatgtttttgaaaatattaggacttccttcttattttaaggcagaatagtattctattg--tatataaactacactttttaaattcactcattcattgattgactcttagattgattcaatactttggctattatgaatttgctgccatattcatggaagtggagatagctcttcaacatagtgatttaattcttttggatataaacccagaagtgtgattgatggatcatatggcagttctatt----tttatttattattaattaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5457257 663 +   6154872 tttatttatgatatacagcataaagttttgatatatgtataattatgcaattattattcaagctaattaacaaatcattaactcacatacttacctgttttgtggtgagaacatttaggatctgttatcttagcaattttcaagtatgcagtacagttttattaactatagt---caccatactatagaatagatctcttgaatttattccttctaactgaaactttgtaccctttgaccagcatctccccattttc----cc----tccctccactgctaacccctgacaagcctcattctactactttgtgcttctatgagttcattttatgtagatttcacacattagatcgtgcagtatttatttttctgtgcctggctcattttacttagcaaagtgtcctcaggtttgccatgtttttgaaaatattaggacttccttcttattttaaggcagaatagtattctattg--tatataaactacactttttaaattcactcattcattgattgactcttagattgattcaatactttggctattatgaatttgctgccatattcatagaagtggagatagctcttcaacatagtgatttaattcttttggatataaacccagaagtgtgattgatggatcatatggcagttctatt----tttatttatt----attaat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29622310 662 + 172585720 tttatttatgatatatgacataaagttttgatatatgcataattatgcaattatta-tcaagctaattaacagatcaataactcacatactcatctgttttgtggtgagaacatttaggatctgttttcttagcaattttcaagtatgcagtacagtattattaactatagt---caccatactatagaatagatctcttgaatttattccttctaactgaaactttgtgccctttgaccagcatctccccattttc----cc----tctctccactcctaacccctgacaagcatcattctactactttgtgcttctatgagttcattttatgtagatttcacatatgagatcatgcagtatttatttttctgtgcctggctcattttacctagcaaaatgtcctcaggtctgccatgttgttgaaaatattaggacttccttcttattttaaggcagaatattattctattg--tatataaactacactttttaaattcactcattaattgattgactcttagattgattaaatacttcggctattatgaatttgctgccatgtacatgaaagtggagatagctcttcaacatagtgatttaattcttttggatataaatccagaagtgtgattgatggatcatacagcagttctatt----tttaTTTATT----ATTAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29285363 662 - 170955103 tttatttatgatatatgacataaagttttgatatatgcataattatgcaattatta-tcaagctaattaacagatcaataactcacatactcatctgttttgtggtgagaacatttaggatctgttttcttagcaattttcaagtatgcagtacagtattattaactatagt---caccatactatagaatagatctcttgaatttattccttctaactgaaactttgtgccctttgaccagcatctccccattttc----cc----tctctccactcctaacccctgacaagcatcattctactactttgtgcttctatgagttcattttatgtagatttcacatatgagatcatgcagtatttatttttctgtgcctggctcattttacctagcaaaatgtcctcaggtttgccatgttgttgaaaatattaggacttccttcttattttaaggcagaatattattctattg--tatataaactacactttttaaattcactcattaattgattgactcttagattgattaaatacttcggctattatgaatttgctgccatgtacatgaaagtggagatagctcttcaacatagtgatttaattcttttggatataaatccagaagtgtgattgatggatcatacagcagttctatt----tttaTTTATT----ATTAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2293875 665 -   2996164 tttatttatgatatatgacataaagttttgatatatgcataattatgcaattatta-tcaagctaattaacagatcaataactcacatactcatctgttttgtggtgagaacatttaggatctgttttcttagcaattttcaagtatgcagtacagtattattaactatagtcaccaccatactatagaatagatctcttgaatttattccttctaactgaaactttgtgccctttgaccagcatctccccattttc----cc----tctctccactcctaacccctgacaagcatcattctactactttgtgcttctatgagttcattttatgtagatttcacatatgagatcatgcagtatttatttttctgtgcctggctcattttacctagcaaaatgtcctcaggtttgccatgttgttgaaaatattaggacttccttcttattttaaggcagaatattattctattg--tatataaactacactttttaaattcactcattaattgattgactcttagattgattaaatacttcggctattatgaatttgctgccatgtacatgaaagtggagatagctcttcaacatagtgatttaattcttttggatataaatccagaagtgtgattgatggatcatacagcagttctatt----tttaTTTATT----ATTAAT
i macNem1.NW_012011356v1   C 0 T 62932
s cerAty1.NW_012002711v1       17919 662 +    766320 tttatttatgatatatgacataaagttttgatatatgcataattatgcaattatta-tcaagctaattaacagatcattaactcacatactcatctgttttgtggtgagaacatttaggatctgttttcttagcaattttcaagtatgcagtacagtattattaactatagt---caccatactatagaatagatctcttgaatttattccttctaactgaaactttgtgccctttgaccagcatctccccattttc----cc----tctctccactcctaacccctgacaagcatcattctactactttgtgcttctatgagttcattttatgtagatttcacatatgagatcatgcagtatttatttttctgtgcctggctcattttacctagcaaaatgtcctcaggtttgccatgttgttgaaaatattaggacttccttcttattttaaggcagaatattattctattg--tatataaactacactttttaaattcactcattaattgattgactcttagattgattaaatacttcggctattatgaatttgctgccatgtacatgaaagtggagatagctcttcaacatagtgatttaattcttttggatataaatccagaagtgtgattgatggatcatacagcagttctatt----tttaTTTATT----ATTAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28526283 646 -  71996105 tgtacttatgatatacagcataatattttgacatatgcataattatgcaattcttattcaagctaattaacagatcattaactcacatacttgcctgttttgtggtgagaacatttaggacctgttatcttagcaattttcaagtgtgcattacagtactattaactatagc---caccatattgtagaatagatctcttgaatttgttccttccaactgaaactttgtactctttgaccaacatctccccattttc----cctatttctctctactcctaacccctgacaaatatcattcgactactctgtgcttctgtgaattcactttatgttgatttcacatatgagatcatgcagtatttatttttctgtgccc------ttttacttagcaaaatgtcttcaggtttgccatgttgttgaaaatattaagacttccttcttgttttcaggcaggatagtattctattt--tatatctactacactttctttattcactctc------------------attgatttaataccttggctattatgaatttgctgtcataaaaatgggtgtgcagacagctcttcaacataatgatttaattcttttggttatatacctagaacgtatacaaatggatcatatgg-agttctatttttatttatttATT----TTTAAT
i chlSab2.chr17            I 15 C 0
s manLeu1.NW_012104165v1     2311192 662 +   2316924 tttatttatgatatatgacataaagttttgatatatgcataattatgcaattatta-tcaagctaattaacagatcattaactcacatactcatctgttttgtggtgagaacatttaggatctgttttcttagcaattttcaagtatgcagcacagtattattaactagagt---caccatactatagaatagatctcttgaatttattccttctaactgaaactttgtgccctttgaccagcatctccccattttc----cc----tctctccactcctaacccctgacaagcatcattctactactttgtgcttctatgagttcattttatgtagatttcacatatgagatcatgcagtatttatttttctgtgcctggctcattttacctagcaaaatgtcctcaggtttgccatgttgttgaaaatattaggacttccttcttattttaaggcagaatgttattctattg--tatataaactacactttttacattcactcattaattgattgactcttagattgattaaatacttcggctattatgaatttgctgccatgtacatgaaagtggagatagctcttcaacatagtgatttaattcttttggatataaatccagaagtgtgattgatggatcatacagcagttctatt----tttaTTTATT----ATTAAT
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2151231 662 -   3067355 tttatttatgatacacgacataaagttttgatatatgtataattatgcaattatta-tcaagctaattaacagatcattaactcacatacttatctgttttgttgtgagaacatttagtatctgttttcttagcaattttcaagtatgcagtacagtattattaactatagt---caccatactatagaatagatctcttgaatttattccttctaactgaaactttgtaccctttgaccagcatctccccattttc----cc----tctctccactcctaacccctgacaagcatcattctactactttgtgcttctatgagttcattttatgtggatttcacatatgagatcatgcagtgtttatttttctgtgcctggctcattttacttagcaaaatgtcctcaggtttgccatgttgttgaaaatattaggacttccttcttattttaaggcagaatattattctattg--tatataaactatactttttaaattcactcattaattgattgactcttagattgattaaatactttggctattatgaatttgctgccatatacatgaaagtggagatagctcttcaacatagtgatttaattcttttggatataaatccagaagtgtgattgatggatcatacagcagttctatt----tttaTTTATT----ATTAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171590567 662 - 171630274 cttatttttgatatacagcataatattttgatatatgcataattatacaattattattcaagctaattaacatatcattaactcacatacttacctgttttgtggtgag-acatttaggatctgttattttaacagttttcaagtatgcagcacagtgttattaactatagt---caccatactgtaaaatagatctcttgaatttattcctt----ctgaaactttgtaccctttgaccaacatcgcccaatcttctatatc----tctctccactcctaagccctgacaagcatcattctactactctgtgcttctgtgagttcattttatgtagatttcacatataagatcatgcagtatttgtttttctgtgcctggcttattttacttagcaaaatgtcctcgggtttgccatgttgttgaaaatattaagacttccttcttgtgttaaggcagaatagtattctattgtatatatatactacactttctttattcactcatccattcgttgactcttagattgattcaataccttggctattatgaatttcctgtcataaaaatgggagtgcagatagctgtccaacatagtgatttaaatcttttgtagatatacccagaatgtatccaaatggatcatatggtagttttatt----tttatttatt---tatt---
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=926080.000000
s hg38.chr6_GL000254v2_alt    450489 190 +   4827813 taa-----ttaattaa--ttaattttttgagacagagtctcgct-----ctgtcgcccaggctggagtgcagtggtgggatctcggcttactgcaactcccacctcctgggttctagcgattgtcttgcctcagcctccagagtagctgggactacaggtaagcaccaccacgcccagctaatttctgtatttttagtagag
s panTro5.chr6              29431562 190 + 175400573 taa-----ttaattaa--ttaattttttgagacagagtctcact-----ctgtcgcccaggctggagtgcagtggtgggatctcggcttactgcaacttccacctcctgggttctagcgattgtcttgcctcagcctccagagtagctgggactacaggtgagcaccaccacgcccagctaatttctgtatttttagtagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29667367 190 + 173848474 taa-----ttaattaa--ttaattttttgagacagagtctcact-----ctgtcgcccaggctggagtgcagtggtgggatctcggcttactgcaacttccacctcctgggttctagcgattgtcttgcctcagcctccagagtagctgggactacaggtgagcaccaccacgcccagctaatttctgtatttttagtagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5457920 190 +   6154872 taa-----ttaattaa--ttaattttttgagacagagtctcact-----ctgtctcccaggctggagtgcagtggtgggatctcggcttactgcaacttccacctcctgggttctagcgattgtcttgcctcagcctccagagtagctgggactacaggtgagcaccaccacgcccagctaatttctgtatttttagtagag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29622972 189 + 172585720 TAA------TAAttta--tttattttttgagacagggcctcact-----ctgtcacccaggctggagtgcagtggtgtgatctcagctcactgcaacctccacctcctgggttctagcgattatcttgcctcagccttcagagtagctgggactagaggtgagtgccaccatgcccagctaatttctgtatttttagtagag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29286025 189 - 170955103 TAA------TAAttta--tttattttttgagacagggcctcact-----ctgtcacccaggctggagtgcagtggtgtgatctcagctcactgcaacctccacctcccgggttctagcgattatcttgcctcagccttcagagtagctgggactagaggtgagcaccaccatgcccagctaatttctgtatttttagtagag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2231608 188 -   2996164 taa------t--ttta-ttttattttttgagacagagtctcact-----ctgtcacccaggctggagtgcagtggtggaatctttgctcactgcaaattctgcctcccgggctcaagtgacactcttgcctcagccttccgagtagctggaactacaggtgtgtgccaccttgcctggctgatttttgtatttttagtagag
i macNem1.NW_012011356v1   T 62932 I 62867
s cerAty1.NW_012002711v1       18581 189 +    766320 TAA------TAAttta--tttattttttgagacaggacctcact-----ctgtcacccaggctggagtgcagtggtgtgatcccagctcactgcaacctccacctcccaggttctagcgattatcttgcctcagccttcagagtagctgggactagaggtgagcgcctccatgcccagctaatttctgtatttttagtagag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28526929 197 -  71996105 TTATATATTTAATTTAAttttattttttgagacagagtctcact-----ctgtcgcccaggctggagtgcagtggtggaatctctgctcactgcaaactctgcctcccgggctcaagtgacactcttgcctcagctttccgagtagctgggactacagatgtgtgccactttgtccagctgatttttgtatttttagtagag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2311854 189 +   2316924 TAA------TAAttta--tttattttttgagacaggacctcact-----ctgtcacccaggctggagtgcagtggtgtgatcccagctcactgcaacctccacctcccaggttctagcgattatcttgcctcagccttcagagtagctgggactagaggtgagcgccaccatgcccagctaatttctgtatttttagtagag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2151893 194 -   3067355 TAA------TAAttta--tttattttttgagacagagtctcactctggactggagtccaggctggagtgcagtggtgtgatctcagctcactgcaacctccacctcctgggttctagcgattatcttgcctcagccttcagagtagctgggactagaggtgagcgccaccatgcccagctaatttctgtatttttagtagag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171591229 174 - 171630274 ----------------------ttttttgaggcagagcctcact-----ctgttgcccaggctggagtgctgtggtgggatctctgctcactgcaaccgccacctcccagtttc-aaccattcttctgcctcagcctcctgagtatctgggactacaggtgtgtgccaccacactcagctaatttttgtatttttagtagag
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=36321.000000
s hg38.chr6_GL000254v2_alt    450679 10 +   4827813 acaggatttc
s panTro5.chr6              29431752 10 + 175400573 acaggatttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29667557 10 + 173848474 acaggatttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5458110 10 +   6154872 acaggatttc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29623161 10 + 172585720 gcaggatttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29286214 10 - 170955103 gcaggatttc
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1       18770 10 +    766320 gcaggatttc
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012104165v1     2312043 10 +   2316924 gcaggatttc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2152087 10 -   3067355 acaggatttc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171591403 10 - 171630274 atggggtttc
i calJac3.chr4             C 0 I 776
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e chlSab2.chr17             28527126  0 -  71996105 C
e macNem1.NW_012011356v1     2231796 62867 -   2996164 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=4319.000000
s hg38.chr6_GL000254v2_alt    450689 15 +   4827813 Ttgtgtgtgtgtgtg
s panTro5.chr6              29431762 13 + 175400573 T--tgtgtgtgtgtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29667567 11 + 173848474 T----tgtgtgtgtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5458120 13 +   6154872 T--tgtgtgtgtgtg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29623171 15 + 172585720 TTTtgtgtgtgtgtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29286224 15 - 170955103 TTTtgtgtgtgtgtg
i macFas5.chr4             C 0 I 2
s cerAty1.NW_012002711v1       18780  1 +    766320 T--------------
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012104165v1     2312053  1 +   2316924 T--------------
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e calJac3.chr4             171591413 776 - 171630274 I
e colAng1.NW_012115566v1     2152097  0 -   3067355 C
e chlSab2.chr17             28527126  0 -  71996105 C
e macNem1.NW_012011356v1     2231796 62867 -   2996164 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1006220.000000
s hg38.chr6_GL000254v2_alt    450704 262 +   4827813 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCCTAGCAAATCTTTAATTACCCTAAGGCTGATGTAGTTTCTCGTATAAGTTCTTATGAAATCTTTTATTTTTCATTAtttttatgtttattttactttaagttctcggatacatgtgcagaatgtgcaaatttgttacataggtatacatgtgccatagtggtttgctgcacctatcaacctgtcatctaggttttaagccccatatgcattagatatttgtcctaatgct
s panTro5.chr6              29431775 262 + 175400573 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCCTAGCAAATCTTTAATTACCCTAAGGCCGATGTAGTTTCTCGTATAAGTTCTTATGAAATCTTTTATTTTTCATTAtttttatgtttattttactttaagttctcggatacatgtgcagaatgtgcaaatttgttacataggtatacatgtgccatagtggtttgctgcacctatcaacctgtcatctaggttttaagccccacatgcattagatatttgtcctaatgct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29667578 262 + 173848474 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCCTAGCAAATCTTTAATTACCCTAAGGCCGATGTAGTTTCTCGTATAAGTTCTTATGAAATCTTTTATTTTTCATTAtttttatgtttattttactttaagttctcggatacatgtgcagaatgtgcaaatttgttacataggtatacatgtgccatagtggtttgctgcacctatcaacctgtcatctaggttttaagccccacatgcattagatatttgtcctaatgct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5458133 261 +   6154872 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCCTAGCAAATCTTTAATTACCCTAAGGCCGATGTAGTTTCTCGTATAAGTTCTTATGAAATCTTTTATTTTTCATTAtttttatgtttattttactttaagttcttggatacatgtgcagaatgtgcaaatttgttacataggt-tacatgtgccatagtggtttgctgcacctatcaacctgtcatctaggttttaagccccacatgcattagatatttgtcctaatgct
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29623186 262 + 172585720 tgtgtctgtgtgtgtgtgtgtgtgtgtgtgtCCTAGGAAGTCTGTAATTACCCTCAGGCCGATATAGTTTCTCCTATATGTTCTTAGGAAATCTTTTATTTTTCATTAtttttatttttattttactttaagttctgggatacatgtgcagaatgtgcaggtttgttacataggtatacatgtgccatagtggtttgctgcacctatcaacctgtcatctaggttttaagccccgcatgcattaggtatttgtcctaatact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29286241 262 - 170955103 tgtctgtgtgtgtgtgtgtgtgtgtgtgtgtCCTAGGAAGTCTGTAATTACCCTCAGGCCGATATAGTTTCTCCTATATGTTCTTAGGAAATCTTTTATTTTTCATTAtttttatttttattttactttaagttctgggatacatgtgcagaatgtgcaggtttgttacataggtatacatgtgccatagtggtttgctgcacctatcaacctgtcatctaggttttaagccccgcatgcattaggtatttgtcctaatact
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1     2294663 262 -   2996164 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCCTAGGAAGTCTGTAATTACCCTCAGGCCGATATAGTTTCTCCTATATGTTCTTAGGAAATCTTTTATTTTTCATTAtttttatttttattttactttaagttctgggatacatgtgcagaatgtgcaggtttgttacataggtatacatgtgccatagtggtttgctgcacctatcaacctgtcatctaggttttaagccccgcatgcattaggtatttgtcctaatact
i macNem1.NW_012011356v1   I 62867 C 0
s cerAty1.NW_012002711v1       18781 260 +    766320 --tgtgtgtgtgtgtgtgtgtgtgtgtgtgtCCTAGGAAGTCTGTAATTACCCTCAGGCCGATATAGTTTCTCCTATGTGTTCTTAGGAAATCTTTTATTTTTCATTAtttttatttttattttactttaagttctgggatacatgtgcagaatgtgcaggtttgttacataggtatacatgtgccatagtggtttgctgcacctatcaacctgtcatctaggttttaagccccgcgtgcattaggtatttgtcctaatgct
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012104165v1     2312054 254 +   2316924 --------tgtgtgtgtgtgtgtgtgtgtgtCCTAGGAAATCTGTAATTACCCTCAGGCCGATATAGTTTCTCCTATGTGTTCTTAGGAAATCTTTTATTTTTCATTAtttttatttttattttactttaagttctgggatacatgtgcagaatgtgcaggtttgttacataggtatacatgtgccatagtggtttgctgcacctatcaacatgtcatctaggttttaagccccgcgtgcattaggtatttgtcctaatgct
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2152097 255 -   3067355 -------atgtgtgtgtgtgtgtgtttgtgtCCTAGGAAATCTGTAATTACCCTAAGGCCGATATAGTTTCTCCTATATGTTCTTAGGAAATCTTTTATTTTTCATTAtttttatttttattttactttaagttctgggatacatgtgcagaatgtgcaggtttattacataggtatacatgtgccatagtggtttgctgcacctatcaatctgtcatctaggttttaagccctgtgtgcattaggtatttgtcctaatgct
i colAng1.NW_012115566v1   C 0 M 265
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e calJac3.chr4             171591413 776 - 171630274 I
e chlSab2.chr17             28527126   0 -  71996105 C
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=515491.000000
s hg38.chr6_GL000254v2_alt    450966 164 +   4827813 ctccctctccttccccctgaacccgtgacaggccccagtgtgtgatgttgccctccctgtgtccatgtgttctcattgtttaactaccgcttatgagtgagaacatgcagtgtttagttttctgttcctgtgttattttgctgaaaataatggtttccagcttc
s panTro5.chr6              29432037 164 + 175400573 ctccctctccttccccctgaacccgtgacaggccccagtgtgtgatgttgccctccctgtgtccatgtgttctcattgtttaactaccgcttatgagtgagaacatgcagtgtttagttttctgttcctgtgttattttgctgaaaataatggtttccagcttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29667840 164 + 173848474 ctccctctccttccccctgaacccgtgacaggccccagtgtgtgatgttgccctccctgtgtccatgtgttctcattgtttaactaccgcttatgagtgagaacatgcagtgtttagttttctgttcctgtgttattttgctgaaaataatggtttccagcttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5458394 164 +   6154872 ctccctctccttccccctgaacccgtgacaggccccagtgtgtgatgttgccctccctgtgtccatgtgttctcattgtttaactaccgcttatgagtgagaacatgcagtgtttagttttctgttcctgtgttattttgctgaaaataatggttttcagcttc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29623448 163 + 172585720 ctccctctccttccccc-gaacccgtgacaggccccagtgtgtgatgttcccctccctgtgtccatgtgttctcattgttcgactcccacttatgagtgagaacatgtggtggttggttttctgttcctgtgttattttgctgagaataatggtttccagcttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29286503 163 - 170955103 ctccctctccttccccc-gaacccgtgacaggccccagtgtgtgatgttcccctccctgtgtccatgtgttctcattgttcgactcccacttatgagtgagaacatgtggtggttggttttctgttcctgtgttattttgctgagaataatggtttccagcttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2294925 163 -   2996164 ctccctctccttccccc-gaacccgtgacaggccccagtgtgtgatgttcccctccctgtgtccatgtgttctcattgttcgactcccacttatgagtgagaacatgtggtggttggttttctgttcctgtgttattttgctgagaataatggtttccagcttc
i macNem1.NW_012011356v1   C 0 I 25
s cerAty1.NW_012002711v1       19041 163 +    766320 ctccctctccttccccc-gaacccgtgacaggccccagtgtgtgatgttcccctccctgcgtccatgtgttctcattgttcgactcccacttatgagtgagaacatgtggtggttggttttctgttcctgtgttattttgctgagaataatggtttccagcttc
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012104165v1     2312308 163 +   2316924 ctctctctccttcccct-gaacccgtgacaggccccagtgtgtgatgttcccctccctgagtccatgtgttctcattgttcgactcccacttatgagtgagaacatgtggtggttggttttctgttcctgtgttattttgctgagaataatggtttccagcttc
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e calJac3.chr4             171591413 776 - 171630274 I
e colAng1.NW_012115566v1     2152352 265 -   3067355 M
e chlSab2.chr17             28527126   0 -  71996105 C
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=172305.000000
s hg38.chr6_GL000254v2_alt    451130 66 +   4827813 atccatgtccctgcaaaggacatgaactcattcttttttatggctgcatagtattccaaggtgtat
s panTro5.chr6              29432201 66 + 175400573 atccatgtccctgcaaaggacatgaactcattcttttttatggctgcatagtattccatggtgtat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29668004 66 + 173848474 atccatgtccctgcaaaggacatgaactcattcttttttatggctgcatagtattccatggtgtat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5458558 66 +   6154872 atccatgtccctgcaaaggacatgaactcattcttttttatggctgcatagtattccatggtgtat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29623611 66 + 172585720 atccatgtccctgcaaaggacatgaactcattcttttttatggctgcatagtattccatggtgtat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29286666 66 - 170955103 atccatgtccctgcaaaggacatgaactcattcttttttatggctgcatagtattccatggtgtat
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1       19204 66 +    766320 atccatgtctctgcaaaggacatgaactcattcttttttatggctgcatagtattccatggtgtat
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012104165v1     2312471 66 +   2316924 atccatgtccctgcaaaggacatgaactcattcttttttatggctgcatagtattccatggtgtat
i manLeu1.NW_012104165v1   C 0 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e calJac3.chr4             171591413 776 - 171630274 I
e colAng1.NW_012115566v1     2152352 265 -   3067355 M
e chlSab2.chr17             28527126  0 -  71996105 C
e macNem1.NW_012011356v1     2295088 25 -   2996164 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=836277.000000
s hg38.chr6_GL000254v2_alt    451196 268 +   4827813 atgtgccacattttcttcatccagtctattattgatgggcatttgggttggttccaagtctttcctattgtaaatggtgctgcaataaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttggatatatacgcactcatgggattgctgggtcaaatggtattgctggttctagatccttgaggaatcgccacactgtcttccacaatggatgaactaatttactctcccaccaacagtgtaaaagcattccta
s panTro5.chr6              29432267 268 + 175400573 atgtgccacattttcttcatccagtctattattgttgggcatttgggttggttccaagtctttcctattgtaaatggtgctgcaataaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttggatatatacgcactcatgggattgctgggtcaaatggtattgctggttctagatccttgaggaatcgccacactgtcttccacaatggatgaactaatttactctcccaccaacagtgtaaaagcattccta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29668070 268 + 173848474 atgtgccacattttcttcatccagtctattattgttgggcatttgggttggttccaagtctttcctattgtaaatggtgctgcaataaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttggatatatacgcactcatgggattgctgggtcaaatggtattgctggttctagatccttgaggaatcgccacactgtcttccacaatggatgaactaatttactctcccaccaacagtgtaaaagcattccta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5458624 268 +   6154872 atgtgccacattttcttcatccagtctattattggtgggcatttgggttggttccaagtctttcctattgtaaatggtgctgcaataaacatacatgtgcatgtgtctttatagcagaatgatttataatcctttggatatatacgcactcatgggattgctgggtcaaatggtattgctggttctagatccttgaggaattgccacactgtcttccacaatggatgaactaatttactctcccaccaacagtgtaaaagcattccta
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29623677 267 + 172585720 atgtgccacattttcttcatccagtctataattgatgggcatttgggttggttccaagtatttgctattgtaaatggtgctgcaataaacatacatgtgcatgtgtctttattgtagaaagatttataatcctttgggtatatacacagtcatgggattgctgggtcaaatggtattgctggttctagatccttgaggaatcgccacactgtattccacaatagatgaactaatttatactcccacc-acagtgtaaaagcattctta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29286732 267 - 170955103 atgtgccacattttcttcatccagtctatcattgatgggcatttgggttggttccaagtatttgctattgtaaatggtgctgcaataaacatacatgtgcatgtgtctttattgtagaaagatttataatcctttgggtatatacacagtcatgggattgctgggtcaaatggtattgctggttctagatccttgaggaatcgccacactgtattccacaatagatgaactaatttatactcccacc-acagtgtaaaagcattctta
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1       19270 267 +    766320 atgtgccacattttcttcatccagtctatcattgatgggcatttgggttggttccaagtctttgctattgtaaatggtgctgcaataaacatacatgtgcatgtgtctttattgtagaaagatttataatcctttgggtatatacacagtcatgggattactgggtcaaatggtattgctggttctagatccttgaggaatcgccacactgtcttccacaatagatgaactaatttatactctcacc-acagtgtaaaagcattctta
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012104165v1     2312537 267 +   2316924 atgtgccacattttcttcatccagtctatcattgatgggcatttgggttggttccaagtctttgctattgtaaatggtgctgcaataaacatacatgtgcatgtgtctttattgtagaaagatttataatcctttgggtatatatacagtcatgggattgctgggtcaaatggtattgctggttctagatccttgaggaattgccacactgtcttccacaatagatgaactaatttatactcccacc-acagtgtaaaagcattctta
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2152617 267 -   3067355 atgtgccacattttcttcatccagtctatcattgatgggcatttgggttggttcctagaatttgctattgtaaatggtgctgcaataagcatacatgtgcatgtgtctttatagtagaatgatttataatcctttgggtatatacacagtcatgggattgctgggttaaatggtattgctggttctagaaccttgaggaatcaccacactgtcttccacaatagatgaactaatttacactcccacc-acagtgtaaaagcattttta
i colAng1.NW_012115566v1   M 265 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e calJac3.chr4             171591413 776 - 171630274 I
e chlSab2.chr17             28527126   0 -  71996105 C
e macNem1.NW_012011356v1     2295088  25 -   2996164 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=2546737.000000
s hg38.chr6_GL000254v2_alt    451464 650 +   4827813 tttctccacagactcgccagcatctgttgtctcctgacattttaataattgccattctaactagtgtgagatggtatctcgtggttttgatttgcatttctcgaatgaccagtgatgacgagctatttttcatgtgtttgttggctccataaatgccttcttttgagaagtttctatttatatcctttgctcactttttgatggggttgtttgttttattttcataaatttgtttaagttcctcatatattctggatattagacttttgtcagatgcatagattgcaaaaattttgtcccattctgtaggttgcctgttcactctgatggtagtttcttttgctgtgcagcagctcttcagtttaattagatcccatttgtcaattttgtcttttgttgccgttgcttttggtgttttagtcatgaagtctttgcccatgcctatatcctgaatggtattgcctaggttcttttctagggtttatatggttttgggttctacatttaagtctttaagctatcttgagttaatttttgcctaaggtataaggaaggggtccagtatcagttttctgcatatggctagccagttttcccaccaccatttgttaaacagagaatcctttcccca-ttgcttgtttctggtagag
s panTro5.chr6              29432535 650 + 175400573 tttctccacagactcgccagcatctgttgtttcctgacattttaataattgccattctaactagtgtgagatggtatctcgtggttttgatttgcatttctcgaatgaccagtgatgacgagctgtttttcatgtgtttgttggctccataaatgccttcttttgagaagtttctatttatatcctttgctcactttttgatggggttgtttgttttattttcataaatttgtttaagttcctcatatattctggatattagacttttgtcagatgcatagattgcaaaagttttgtcccattctgtaggttgcctgttcactctgatggtagtttcttttgctgtgcagcagctcttcagtttaattagatcccatttgtcaattttgtcttttgttgccgttgcttttggtgttttagtcatgaagtctttgcccatgcctatatcctgaatggtattgcctaggttcttttctagggtttatatggttttgggttctacatttaagtctttaagctatcttgagttaatttttgcctaaggtataaggaaggggtccagtatcagttttctgcatatggctagccagttttcccaccaccatttgttaaacagagaatcctttcctca-ttgcttgtttctggtagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29668338 650 + 173848474 tttctccacagactcgccagcatctgttgtttcctgacattttaataattgccattctaactagtgtgagatggtatctcatggttttgatttgcatttctcgaatgaccagtgatgacgagctgtttttcatgtgtttgttggctccataaatgccttcttttgagaagtttctatttatatcctttgctcactttttgatggggttgtttgttttattttcataaatttgtttaagttcctcatatattctggatattagacttttgtcagatgcatagattgcaaaagttttgtcccattctgtaggttgcctgttcactctgatggtagtttcttttgctgtgcagcagctcttcagtttaattagatcccatttgtcaattttgtcttttgttgccattgcttttggtgttttagtcatgaagtctttgcccatgcctatatcctgaatggtattgcctaggttcttttctagggtttatatggttttgggttctacatttaagtctttaagctatcttgagttaatttttgcctaaggtataaggaaagggttcagtatcagttttctgcatatggctagccagttttcccaccaccatttgttaaacagagaatcctttcctca-ttgcttgtttctggtagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5458892 650 +   6154872 tttctccacagactcgccagcatctgttgtttcctgacattttaataattgccattctaactagtgtgagatggtatctcgtggttttgatttgcatttctcgaatgaacagtgatgacgagctgtttttcatgtgtttgttggctccataaatgccttcttttgagaagtttctatttatatcctttgctcactttttgatggggttgtttgttttattttcataaatttgtttaagttcctcatatattctggatattagacttttgtcagatgcatagattgcaaaaattttgtcccattctgtaggttgcctcttcactctgatggtggtttcttttgctgtgcagcagctcttcagtttaattagatcccatttgtcaattttgtcttttgttgccgttgcttttggtgttttagtcatgaagtctttgcccatgcctatatcctgaatggtattgcctaggttcttttctatggtttatatggttttgggttctacatttaagtctttaagctatcttgagttaatttttgcctaaggtataaggaaggggtccagtatcagttttctgcatatggctagccagttttcccaccaccatttgttaaacagagaatcctttcccca-ttgcttgtttctggtagag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29623944 650 + 172585720 tttctccacagactcgtcagcatctgttgtttcctgacattttaataattgccattctaactggcacgagatggtatcttgtggttttgatttgcgtttctctaatgaccagtgatgatgagcggtttttcatatgttttttggctccataaatgtcttcttttgagaagtgtctatttatatccttcgctcactttttgatggggttgtttgtcttattttcataaatttgtttaagctcctcatatattctgggtattagacttctgtcagatggatagattgcaaaaa-tttgtcccattctgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagtagctctttagtttaattagatcccatttgtcaattttggcttttgttgcaattgcttttggtgttttactcatgaagtctttgcccatgcctatatcctgaatggtattgcctaggttcttttctagggtttttatggttttgggttctacatttaagtctttaatccaccttgagttaatttttgcataaggtataaggaaagggtccagtttcagttttctgcatatggctagccaattttcccatcaccatttgttaaacaaagaatcctttccccagttgcttgtttctggtagag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29286999 650 - 170955103 tttctccacagactcgtcagcatctgttgtttcctgacattttaataattgccattctaactggcacgagatggcatcttgtggttttgatttgcgtttctctaatgaccagtgatgatgagcggtttttcatatgttttttggctccataaatgtcttcttttgagaagtgtctatttatatccttcgctcactttttgatggggttgtttgtcttattttcataaatttgtttaagctcctcatatattctgggtattagacttctgtcagatggatagattgcaaaaa-tttgtcccattctgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagtagctctttagtttaattagatcccatttgtcaattttggcttttgttgcaattgcttttggtgttttagtcatgaagtctttgcccatgcctatatcctgaatggtattgcctaggttcttttctagggtttttatggttttgggttctacatttaagtctttaatccaccttgagttaatttttgcataaggtataaggaaagggtccagtttcagttttctgcatatggctagccaattttcccatcaccatttgttaaacaaagaatcctttccccagttgcttgtttctggtagag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2295113 650 -   2996164 tttctccacagactcgtcagcatctgttgtttcctgacattttaataattgccattctaactggcacgagatggtatcttgtggttttgatttgcgtttctctaatgaccagtgatgatgagcggtttttcatatgttttttggctccataaatgtcttcttttgagaagtgtctatttatatccttcgctcactttttgatggggttgtttgtcttattttcataaatttgtttaagctcctcatatattctgggtattagacttctgtcagatggatagattgcaaaaa-tttgtcccattctgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagtagctctttagtttaattagatcccatttgtcaattttggcttttgttgcaattgcttttggtgttttagtcatgaagtctttgcccatgcctatatcctgaatggtattgcctaggttcttttctagggtttttatggttttgggttctacatttaagtctttaatccaccttgagttaatttttgcataaggtataaggaaagggtccagtttcagttttctgcatatggctagccaattttcccatcaccatttgttaaacaaagaatcctttccccagttgcttgtttctggtagag
i macNem1.NW_012011356v1   I 25 C 0
s cerAty1.NW_012002711v1       19537 650 +    766320 tttctccacagactcatcagcatctgttgtttcctgacattttaataattgccgttctaactggcacgagatggtatcttgtggttttgatttgcgtttctctaatgagcagtgatgatgagcggtttttcatatgttttttggctccataaatgtcttcttttgagaagtgtctatttatatccttcgctcactttttgatggggttgtttgtcttattttcataaatttgtttaagctcctcatatattctgggtattagacttttgtcagatggatagattgcaaaaa-tttgtcccattctgtaggttgtctgttcactctgatgatagtttcttttgctgtgcagtagctctttaatctaattagatcccatttgtcaattttggcttttgttgcaattgcttttggtgttttagtcatgaagtctttgctcatgcctatatcctgaatggtattgcctaggttcttttctagggtttttatggttttgggttctacttttaagtctttaatccatcttgagttaatttttgcataaggtgtaaggaaagggtccagtttcagttttctgcatatggctagccaattttcccatcaccatttgttaaacagagaatcctttccccagttgcttgtttctggtagag
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012104165v1     2312804 650 +   2316924 tttctccacagactcatcagcatctgttgtttcctgacattttaataattgccattctaactggcacgagatggtatcttgtggttttgatttgcgtttctctaatgaccagtgatgatgagcggtttttcatatgttttttggctccataaatgtcttcttttgagaagtgtctatttatatccttcgctcactttttgatggggttgtttgtcttattttcataaatttgtttaagctcctcatatattctgggtattagacttttgtcagatggatagattgcaaaaa-tttgtcccattctgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagtagctctttaatctaattagatcccatttgtcaattttggcttttgttgcaattgcttttggtgttttagtcatgaagtctttgctcatgcctatatcctgaatggtattacctaggttcttttctagggtttttatggttttgggttctacttttaagtctttaatccatcttgagttaatttttgcataaggtgtaaggaaggggtccagtttcagttttctgcatatggctagccaattttcccatcaccatttgttaaacagagaatcctttccccagttgcttgtttctggtagag
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2152884 650 -   3067355 tttctccacagactcatcagcatctgttgtttcctgacattttaataattgctattctaacgggcacgagatggtatcttgtggttttgatttgcatttctctaatgaccagtgatgatgagctgtttttcacatatttgttggctccataaatgtcttcttttgagaagtgtctatttatatccttcactcactttttgatggggttgtttgttttattttcatacatttgtttaagctcctcatatattctggatattagacttttgtcagatggatagattgcaaaaa-tttttcccattctgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagtagctctttaatctaattagatcccatttgtcaattttggcttttgttgcaattgcttttggtgttttagtcatgaagtctttgcccatgcctatatcctgaatggtatagcctaggttcttttctagggtttttatggttttgggttctacatttaagtttttaatctatcttgagttaatttttgcataaggtataaggaaggggtccagtttcagttttttggatatggctagccaattttcccatcaccatttgttaaacagagaatcttttccccaattgcttgtttctggtagag
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e calJac3.chr4             171591413 776 - 171630274 I
e chlSab2.chr17             28527126   0 -  71996105 C
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=2142779.000000
s hg38.chr6_GL000254v2_alt    452114 481 +   4827813 atgggatttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatctgccgacctcggcctcccaaagtgttggaattacaggcataagccactgcgcctggccctattttaaatttatttaggaaacttcatagtgttttccctcatggctgtcctaatttacatttcaaaaaacaatgtaacaatgtataagaattctcttttctccatattcttcccaccacctgttgtcctttgtg-tttttcataataga---tcta---------------------------------------------------------------------------------actggtgtgaggtATGAGGTGATAGctactggtgtgggcctgaactttaggtccagtggaacc--tagagtggtggggatcaacctgaagcctggaactggcctggttctagagtggaacttgctgccttaggggcttgtctggagcctgggtttatggggcccagcttatatgtgctggtctggaggctaggcccttgggtactggcatggatct
s panTro5.chr6              29433185 481 + 175400573 atgggatttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatctgccgacctcggcctcccaaattgttggaattacaggcgtaagccactgcgcctggccctatttttaatttatttaggaaacttcatagtgttttccctcatggctgtcctaatttacatttcaaaaaacaatgtaacaatgtataagaattctcttttctccatattcttcccaccacctgttgtcctttgtg-tttttcataataga---tcta---------------------------------------------------------------------------------actggtgtgaggtATGAGGTGATAGctactggtgtgggcctgaactttaggtccagtggaacc--tagagtggtggggatcaacctgaagcctggaactggcctggttctagagtggaacttgctgccttaggggcttgtctggagcctgggtttatggggcccagcttatatgtgctggtctggaggctaggcccttgggtactggcatgggtct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29668988 481 + 173848474 atgggatttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatctgccgacctcggcctcccaaattgttggaattacaggcgtaagccactgcgcctggccctatttttaatttatttaggaaacttcatagtgttttccctcatggctgtcctaatttacatttcaaaaaacaatgtaacaatgtataagaattctcttttctccatattcttcccaccacctgttgtcctttgtg-tttttcataataga---tcta---------------------------------------------------------------------------------actggtgtgaggtATGAGGTGATAGctactggtgtgggcctgaactttaggtccagtggaacc--tagagtggtggggatcaacctgaagcctggaactggcctggttctagagtggaacttgctgccttaggggcttgtctggagcctgggtttatggggcccagcttatatgtgctggtgtggaggctaggcccttgggtactggcatgggtct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5459542 473 +   6154872 atgggatttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatctgccgacctcggcctcccaaagtgttggaattacaggcgtaagccactgcacctggccctatttttaatttatttaggaaacttcatagtgttttccctcatggctgtcctaatttacatttcaaaa--------aacaatgtataagaattctcttttctccatattcttcccaccacctgttgtcctttgtg-tttttcataataga---tcta---------------------------------------------------------------------------------actggtgtgaggtatgaggtgatagctactggtgtgggcctgaactttaggtccagtggaacc--tagagtggtggggatcaacctgaagcctggaactggcctggttctagagtggaacttgctgccttaggggcttgtctggagcctgggtttatggggcccagcttatatgtgctggtctggaggctaggcccttgggtactggcatgggtct
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29624594 502 + 172585720 atgggatttcaccatgttggccaggctggtctcaaactcttgacctcaggtgatctgcccacctcggcctcccaaagtgttggaattacaggcataagtcactgtgcctggccctatttttaatttatttaggaactttcacagtgttttccctcatggcagtcctaatttacatttccaaa--------aacaatgtataagaattcccttttttccatattcttcccaacacctgttatcctttgtc-tttttcatagtagacattcta------------------------------------------------------actggtgtgaggtatgaggtgatatctactggtgtgaggtatgaggtgatatctattggtgtgggcctggaatttaggtctagtggagcc--tagagcagtggggatcaacctgaagcctggaattggcctggtgctagagtggaacttgctgccttggggtcttgtctggagcctgggtttatggggcccagctt-tatgtgctggtctgcaggctaggtccttggatactggcatgggtct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29287649 502 - 170955103 atgggatttcaccatgttggccaggctggtctcaaactcttgacctcaggtgatctgcccacctcggcctcccaaagtgttggaattacaggcataagtcactgtgcctggccctatttttaatttatttaggaactttcacagtgttttccctcatggcagtcctaatttacatttccaaa--------aacaatgtataagaattcccttttttccatattcttcccaacacctgttatcctttgtc-tttttcatagtagacattcta------------------------------------------------------actggtgtgaggtatgaggtgatatctactggtgtgaggtatgaggtgatatctattggtgtgggcctggaatttaggtctagtggagcc--tagagcagtggggatcaacctgaagcctggaattggcctggtgctagagtggaacttgctgccttggggtcttgtctggagcctgggtttatggggcccagctt-tatgtgctggtctgcaggctaggtccttggatactggcatgGGTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2295763 502 -   2996164 atgggatttcaccatgttggccaggctggtctcaaactcttgacctcaggtgatctgcccacctcggcctcccaaagtgttggaattacaggcataagtcactgtgcctggccctatttttaatttatttaggaactttcacagtgttttccctcatggcagtcctaatttacatttccaaa--------aacaatgtataagaattcccttttttccatattcttcccaacacctgttatcctttgtc-tttttcatagtagacattcta------------------------------------------------------actggtgtgaggtatgaggtgatatctactggtgtgaggtatgaggtgatatctattggtgtgggcctggaatttaggtctagtggagcc--tagagcagtggggatcaacctgaagcctggaattggcctggtgctagagtggaaattgctgccttggggtcttgtctggagcctgggtttatggggcccagctt-tatgtgctggtctgcagactaggtccttggatactggcatgggtct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       20187 529 +    766320 atgggatttcaccatgttggccaggctggtctcaaactcttgacctcaggtgatctgcccacctcggcctcccaaagtgttggaattacaggcataagtcactgtgcctggccctatttttaatttatttaggaactttcacagtgttttccctcatggcagtcctaatttacatttccaaa--------aaccatgtataagaattcccttttctccatattcttcccaacacctgttatcctttgtc-tttttcataacagatattcaa---------------------------actggtgtgaggtatgaggtgatatctactggtgtGAGGTATGAGGTGATAtctactggtgtgaggtatgaggtgatatctactggtgtgggcctggaatttaggtctagtggagcc--tagagcagtggggatcaacctgaagcctggaattggcctggtgctagagtggaacttgctgccttggggtcttgtctggagcctgggtttatggggcccagctt-tatgtgctggtctgcaggctaggtccttggatactggcatgggtct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28527126 464 -  71996105 atggggtttcaccatgttggccaggcttgtctcaaactcctgacctcaggtaatccgcctgcctcggcctcccaaagtgctgggattacagttttaagccaccctgtttggcAAtatttttaacttatttaggaaccttcacagtgtttttcatcatggctgtcctaatgtacatttccaaa--------aacagtgtataaggattcccttttctccatattcttctcaacatctgttatcctttgtcttttttcataatagacattcta---------------------------------------------------------------------------------actggtgtcaggtatgaggtgatatctactggtgtggacctggactttaggtccactggagcc--tcgagcagtggggaccaacctga-------------cctggtgctagagcagaacttactgccttggaggctggtctggagtctgggtttatgaggcccagcttatatgtactggtctggaggctaggtccttgggtactggcatgggtct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2313454 556 +   2316924 atgggatttcaccatgttggccaggctggtctcaaactcttgacctcaggtgatctgcccacctcggcctcccaaagtgttggaattacaggcataagtcactgtgcctggccctatttttaatttatttaggaactttcacagtgttttccctcatggcagtcctaatttacatttccaaa--------aaccatgtataagaattcctttttttccatattcttcccaacacctgttatcctttgtc-tttttcatagtagacattctaactggtgtgaggtatgaggtgatatctactggtgtgaggtatgaggtgatatctactggtgtgaggtatgaggtGATAtctactggtgtgaggtatgaggtgatatctactggtgtgggcctggaatttaggtctagtggagcc--tagagcagtggggatcaacctgaagcctgaaattggcctggtgctagagtggaacttgctgccttggggtcttgtctggagcctgggtttatggggcccagctt-tatgtgctggtctgcaggctaggtccttggatactggcatgggtct
i manLeu1.NW_012104165v1   C 0 I 549
s colAng1.NW_012115566v1     2153534 477 -   3067355 atgggatttcaccatgttggccaggctggtctcaaactcttgacctcaggtgatctgcccacctcggcctcccaaagtgttggaattacaggcgtaaaccactgtgcctggccctatttttaatttgtttaggaactttcacagtgttttctctcatggcagtcctaatttacatttccaaa--------aacaatgtataagaattcccttttctccatattcttcccaacacctgttatcctttgtc-tttttcataatagacattcta---------------------------------------------------------------------------------actggtgtgaggtatgaggtgatatctactggtgtggacctggaatttaagtccagtggagcctatagagcaatggggaccaacctgaagcctggaactggcctggtgctagagtggaacttgctgctttgggggcttgtctggagcttgggtttatggggcccagctt-tatgtgctggtctgaagggtaggtccttgggtactggcatgggtct
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e calJac3.chr4             171591413 776 - 171630274 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=21815.000000
s hg38.chr6_GL000254v2_alt    452595 18 +   4827813 tgggactacagagtctga
s panTro5.chr6              29433666 18 + 175400573 tgggactacagagtctga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29669469 18 + 173848474 tgggactacagagtctga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5460015 18 +   6154872 tgggactacagagtctga
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17             28527590 18 -  71996105 tggggttacggagtctga
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     2154011 18 -   3067355 ggggacttcagagtctga
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e calJac3.chr4             171591413 776 - 171630274 I
e manLeu1.NW_012104165v1     2314010 549 +   2316924 I
e cerAty1.NW_012002711v1       20716  0 +    766320 C
e macNem1.NW_012011356v1     2296265  0 -   2996164 C
e macFas5.chr4              29288151  0 - 170955103 C
e rheMac8.chr4              29625096  0 + 172585720 C
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=5266.000000
s hg38.chr6_GL000254v2_alt    452613 4 +   4827813 ccta
s panTro5.chr6              29433684 4 + 175400573 tcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29669487 4 + 173848474 tcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5460033 4 +   6154872 ccta
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17             28527608 4 -  71996105 cctg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     2154029 4 -   3067355 cctg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171592189 4 - 171630274 CCTG
i calJac3.chr4             I 776 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e manLeu1.NW_012104165v1     2314010 549 +   2316924 I
e cerAty1.NW_012002711v1       20716 0 +    766320 C
e macNem1.NW_012011356v1     2296265 0 -   2996164 C
e macFas5.chr4              29288151 0 - 170955103 C
e rheMac8.chr4              29625096 0 + 172585720 C
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=908184.000000
s hg38.chr6_GL000254v2_alt    452617 169 +   4827813 ggggGCCAACTGGCACTGGAAAGTCCTATTTTGCCGTTTTATTGATATCACTTCTCACTCTCTAAA------TTTTT--TTTGGCTTTTTAATTTTCTGGGCTCTTTTCTCCTTCTTCTCTTACAAAATATATACATTTTCTTTTATATGTGTAGACTTTTTGTTTTCTTTTGGGAG
s panTro5.chr6              29433688 169 + 175400573 gggggccaactggcactggaaagtcctATTTTGCCGTTTTATTAATATCACTTCTCACTCTCTAAA------TTTTT--TTTGGCTTTTTAATTTTCTGGGCTCTTTTCTCCTTCTTCTCTTACAAAATATATACATTTTCTTTTATATGTGTAGACTTTTTGTTTTCTTTTGGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29669491 169 + 173848474 gggggccagctggcactggaaagtcctATTTTGCCGTTTTATTAATATCACTTCTCACTCTCTAAA------TTTTT--TTTGGCTTTTTAATTTTCTGGGCTCTTTTCTCCTTCTTCTCTTACAAAATATATACATTTTCTTTTATATGTGTAGACTTTTTGTTTTCTTTTGGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5460037 169 +   6154872 gggggccaactggcactggaaagtcctattttgccattttattgatatcACTTCTCACTCTCTAAA------TTTTT--TTTGGCTTTTTAATTTTCTGGGCTCTTTTCTCCTTCTTCTCTTACAAAATATGTACATTTTCTTTTATATGTGTAGACTTTTTGTTTTCTTTTGGGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29625096 169 + 172585720 ggggACCAACTGGCACTGGAAAGTCCTATTTTGCCATTTTATTGAGATCACTTCTCACTATCTAAA------TTTTT--TTTGGCTTTTTAACTTTCTGTGCTCTTTTCTCCTTTTTCTTTTACAATACATATATATTTTCTTTTATATGTGTAGACTTTTTGTTTTCTTTTGGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29288151 169 - 170955103 GGGGACCAACTGGCACTGGAAAGTCCTATTTTGCCATTTTATTGAGATCACTTCTCACTACCTAAA------TTTTT--TTTGGCTTTTTAACTTTCTGTGCTCTTTTCTCCTTTTTCTTTTACAATACATATATATTTTCTTTTATATGTGTAGACTTTTTGTTTTCTTTTGGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2296265 169 -   2996164 ggggaccaactggCACTGGAAAGTCCTATTTTGCCATTTTATTGAGATCACTTCTCACTATCTAAA------TTTTT--TTTGGCTTTTTAACTTTCTGTGCTCTTTTCTCCTTTTTCTTTTACAATACATATATATTTTCTTTTATATGTGTAGACTTTTTGTTTTCTTTTGGAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       20716 168 +    766320 ggggACCAACTGGCACTGGAAAGTCCTATTTTGCCATTTTATTGAGATCACTTCTCACTATCTAAA-------TTTT--TTTGGCTTTTTAACTTTCTGTGCTCTTTTCTCCTTTTTCTTTTACAATACATATATGTTTTCTTTTATATGTGTAGACTTTTTGTTTTCTTTTGGAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28527612 175 -  71996105 gggggccaactggcactggaaagtcctattttgccattttattgatatcACTTCTCACTATCTAAAttttctttttt--tttttatttttaactttctgtgctcttttcttctttttctcttACAAAACATATACATTTTCTTTTATATGTATAGACTTTTTGTTTTCTTTTGGGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2314559 164 +   2316924 ggggACCAACTGGCACTGGAAAGTCCTATTTTGCCATTTTATTGAGATCACTCCTCA----CTAAA-------TTTT--TTTGGCTTTTTAACTTTCTGTGCTCTTTTCTCCTTTTTCTTTTACAATACATATATATTTTCTTTTATATGTGTAGACTTTTTGTTTTCTTTTGGAAG
i manLeu1.NW_012104165v1   I 549 C 0
s colAng1.NW_012115566v1     2154033 169 -   3067355 ggggGCCAACTGGCACTGGAAAGTCCTGTTTGGCCATTTTATTGATATCACTTCTCACTATCTAAA------TTTTT--TTTGGCTTTTTAACTTTCTGTGCTCTTTTCTCCTTTTTCTTTTACAAAACATATATATTTTCTTTTATATGTATAGACTTCTTGTTTTCTTTTGGAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171592193 167 - 171630274 GGGGGCCAACTGGCACTGGAAAGTCCTATTTTGCCATTATGTTGATATCGCTTCT----ATCTAAA------TTCTTTGTTTGGCTTTTTAACTTTCTTTGCTCTTTTCTCCTTTTTCTCTTACAAAACATATACATTTTCTTTTATATGTATAGACTTTTTGTTTTCTTTTGGGAT
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=25520.000000
s hg38.chr6_GL000254v2_alt    452786 5 +   4827813 GTTAt
s panTro5.chr6              29433857 5 + 175400573 GTTAt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29669660 5 + 173848474 GTTAt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5460206 5 +   6154872 GTTAt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29625265 5 + 172585720 GTTAt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29288320 5 - 170955103 GTTAt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2296434 5 -   2996164 GTTAt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       20884 5 +    766320 GTTAt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28527787 5 -  71996105 GTTAT
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012104165v1     2314723 5 +   2316924 GTTAt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2154202 5 -   3067355 GTTAt
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e calJac3.chr4             171592360 0 - 171630274 C
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=8595.000000
s hg38.chr6_GL000254v2_alt    452791 2 +   4827813 gt
s panTro5.chr6              29433862 2 + 175400573 gt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29669665 2 + 173848474 gt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5460211 2 +   6154872 gt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29625270 2 + 172585720 gt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29288325 2 - 170955103 gt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2296439 2 -   2996164 gt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       20889 2 +    766320 gt
i cerAty1.NW_012002711v1   C 0 I 1163
s manLeu1.NW_012104165v1     2314728 2 +   2316924 gt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2154207 2 -   3067355 gt
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e calJac3.chr4             171592360 0 - 171630274 C
e chlSab2.chr17             28527792 3 -  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=2003183.000000
s hg38.chr6_GL000254v2_alt    452793 509 +   4827813 tgggaacaggcccccaaatctggccataaactggccccaaaactggccataaacaaaatctctgcagccctgtgacatgtttgtgatggccatgatgcccatgccgaaggttgtgggtttaccagaatgagggcaaggaacacctggcccacccagggcagaaaaccgcttaaaggcattcctaaatcacaaacaatagcatgagtgatctgtgccttaaggacatgtttctgctgcagataactagacagagcccatccctttgtttcggcccatccctttgtttcccttaaggaatacttttagttaatctataatctatagaaataatgcttatcactggcttcgtgtcaatcaatatgtg--ggtcaaactctgttcagggctctcagctctgaaggctgtgagtgccctgatttcccactccatactctatatttctgtgtgtgtgtctttaattcctctagtgccgctgggttagcatctccatgatcgaggtggtcttggcaAG
s panTro5.chr6              29433864 509 + 175400573 tgggaacaggcccccaaatctggccataaactggccccagaactggccataaacaaaatctctgcagccctgtgacatgtttgtgatggccatgatgcccatgctgaaggttgtgggtttaccagaatgagggcaaggaacacctggcccacccagggcagaaaaccgcttaaaggcattcctaaatcacaaacaatagcatgagtgatctgtgccttaaggacatgtttctgctgcagataactagacagagcccatccctttgtttcggcccatccctttgtttcccttaaggaatacttttagttaatctataatctatagaaataatgcttatcactggcttggtgtcaatcaatatgtg--cgtcaaactctgttcagggctctcagctctgaaggctgtgagtaccctgatttcccactccatactctatatttctgtgtgtgtgtctttaattcctctagtgccgctgggttagcatctccatgatcgaggtggtcttggcaAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29669667 509 + 173848474 tgggaacaggcccccaaatctggccataaactggccccagaactggccataaacaaaatctctgcagccctgtgacatgtttgtgatggccatgatgcccatgctgaaggttgtgggtttaccagaatgagggcaaggaacacctggcccacccagggcagaaaaccgcttaaaggcattcctaaatcacaaacaatagcatgagtgatctgtgccttaaggacatgtttctgctgcagataactagacagagcccatccctttgtttcggcccatccctttgtttcccttaaggaatacttttagttaatctataatctatagaaataatgcttatcactggcttggtgtcaatcaatatgtg--ggtcaaactctgttcagggctctcagctctgaaggctgtgagtgccctgatttcccactccatactctatatttctgtgtgtgtgtctttaattcctctagtgccgctgggttagcatctccatgatcgaggtggtcttggcaAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5460213 509 +   6154872 tgggaacaggcccccaaatctggccataaactggccccaaaactggccataaacaaaatctctgcagccctgtgacatgtttgtgatggccatgatgcccatgctgaaggttgtgggtttaccagaatgagggcaaggaacacctggcccacccagggcagaaaaccgcttaaaggcattcctaaatcacaaacaatagcatgagtgatctgtgccttaaggacatgtttctgctgcagataactagacagagcccatccctttgtttcagcccatccctttgtttcccttaaggaatacttttagttaatctataatctatagaaataatgcttatcactggcttggtgtcaatcaatatgtg--cgtcaaactctgttcagggctctcagctctgaaggctgtgagtgccctgatttcccactccatactctatatttctgtgtgtgtgtctttaattcctctagtgccgctgggttagcatctccatgatcgaggtggtcttggcaAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29625272 511 + 172585720 tgggaacaggcccccaaatctggccataaactggccccaaaactggccataaacaaaatctctgcagcactgtgacatgtttgtgatggctatgatgcccatggtgaaggctgtgggtttaccagaatcagggcaaggaacacctggcccacccagggcagaaaaccgcttaaaggtgttcctaaaacacaaacaatagtgtgagtgatctgtgccttaaggacatgttcctgctgctgatagctagccagagcccatccctttgtttcggcccatccctttgtttcccgtaaggaatacttttagttaatctataatctatagaaataatgcttatcactggcttgctgtcagtaaatatgtgtgggtcaaactctgttcagggctctcagctctaaagactgtgagtcccctgatttccaactccacactctatatttctgtgtatgtatctttaattcctctagtgctgctgagttagggtctccacgattgagctggtcttggcaAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29288327 511 - 170955103 tgggaacaggcccccaaatctggccataaactggccccaaaactggccataaacaaaatctctgcagcactgtgacatgtttgtgatggctatgatgcccatggtgaaggctgtgggtttaccagaatcagggcaaggaacacctggcccacccagggcagaaaaccgcttaaaggtgttcctaaaacacaaacaatagtgtgagtgatctgtgccttaaggacatgttcctgctgctgatagctagccagagcccatccctttgtttcggcccatccctttgtttcccgtaaggaatacttttagttaatctataatctatagaaataatgcttatcactggcttgctgtcagtaaatatgtgtgggtcaaactctgttcagggctctcagctctaaagactgtgagtcccctgatttccaactccacactctatatttctgtgtatgtatctttaattcctctagtgctgctgagttagggtctccacgattgagctggtcttggcaAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2296441 511 -   2996164 tgggaacaggcccccacatctggccataaactggccccaaaactggccataaacaaaatctctgcagcactgtgacatgtttgtgatggctatgatgcccatggtgaaggctgtgggtttaccagaatcagggcaaggaacacctggcccacccagggcagaaaaccgcttaaaggtgttcctaaaacacaaacaatagtgtgagtgatctgtgccttaaggacatgttcctgctgctgatagctagccagagcccatccctttgtttcggcccatccctttgtttcccgtaaggaatacttttagttaatctataatctatagaaataatgcttatcactggcttgctgtcagtaaatatgtgtgggtcaaactctgttcagggctctcagctctaaagactgtgagtcccctgatttccaactccacactctatatttctgtgtatgtatctttaattcctctagtgctgctgagttagggtctccacgattgagctggtcttggcaAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       22054 511 +    766320 tgggaacaggcccccaaatctggccataaactggccccaaaactggtcataaacagaatctctgcagcactgtgacatgtttgtgatggctatgatgcccatggtgaaggctgtgggtttaccagaatcagggaaaggaacacctggcccacccagggcagaaaaccgcttaaaggtgttcctaaaacacaaacaatagtgtgagtgatctgtgccttaaggacatgttcctgctgctgatagctagtcagagcccatccctttgtttcggcccatccctttgtttcccgtaaggaatacttttagttaatctataatctatagaaataatgcttatcactggcttgctgtcagtaaatatgtgtaggtcaaactctgttcagggctctcagctctaaagactgtgagtcccctgatttccaactccacactctctatttctgtgtatgtatctttaattcctctagtgctgctgagttagggtctccacgattgagctggtcttggcaAG
i cerAty1.NW_012002711v1   I 1163 C 0
s manLeu1.NW_012104165v1     2314730 511 +   2316924 tgggaataggcccccaaatctggccataaactggccccaaaactggccataaacaaaatctctgcagcactgtgacatgtttgtgatggctatgatgcccatggtgaaggctgtgggtttaccagaatcagggcaaggaacacctggcccacctagggcagaaaaccgcttaaaggtgttcctaaaacacaaacaatagcgtgagcgatctgtgccttaaggacatgttcctgctgcctacagctagccagagcccatccctttgtttcggcccatccctttgtttcccttaaggaatacttttagttaatctataatctatagaaataatgcttatcattggcttgctgtcagtaaatatgtgtgggtcaaactctgttcagggctctcagctctaaagactgtgagtcccctgatttccagctccacactctatatttctgtgtatgtatctttaattcctctagtgctgctgagttagggtctccacgattgagctggtcttggcaAG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2154209 511 -   3067355 tgggaacaggcccccaaatctggccataaactggccccaaaactggccataaacaaaatctctgcagcactgtgacatgtttgtgatggccatgatgcccacggtgaaggttgtgggtttaccagaatcagggcaaggaacacctggcccacccagggcagaaaaccgcttaaaggtgttcctaaaacacaaacaatagcatgagagatctgtgccttaaggacatgttcctgctgccgatagctagccagagcccatccctttgtttcggcccatccctgtgtttcccataaggaatacttttagttaatctataatctatagaaataatgcttatcactggcttgctgtcaataaatatgtgtaggtcaaactctgttcagggctctcagctctaaagactatgagtcccctgatttccagctccacactctgtatttctgtatgtgtgtctttaattcctcttgtgctgctgggttagggtctccacgactgagctggtcttggcaAG
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e calJac3.chr4             171592360   0 - 171630274 C
e chlSab2.chr17             28527792   3 -  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=64015.000000
s hg38.chr6_GL000254v2_alt    453302 14 +   4827813 GTTATAATTATAGG
s panTro5.chr6              29434373 14 + 175400573 GTTATAATTATAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29670176 14 + 173848474 GTTATAATTATAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5460722 14 +   6154872 GTTATAATTATAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29625783 14 + 172585720 CTTATAATTATAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29288838 14 - 170955103 CTTATAATTATAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2296952 14 -   2996164 CTTATAATTATAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       22565 14 +    766320 GTTATAATTATAGG
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012104165v1     2315241 14 +   2316924 GTTATAATTATAGG
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2154720 14 -   3067355 GTTATAATTATAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171592360 14 - 171630274 GTTATAATTATAGT
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e chlSab2.chr17             28527792  3 -  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1296214.000000
s hg38.chr6_GL000254v2_alt    453316 241 +   4827813 ATATCTAATATTGAATCCTAGTCATATTAACCTGTGCTATTTAATTTGTAATCT--GAAAGTGATCAGTTACTAATAATTCCCCCAAAGTGTAACACAGATATTATTGTTTTTATTGTTTTGTACTTTTCAAACCAGTCAAGCAAACTTTATGCAG------------CAGAACAACAAGAATGAGTTCTCTCACTTTATCAAACTGAAGGG-AGGAGATAGGT-GCTTGCATAAGCTCTGGCAACTTGTATATGAA
s panTro5.chr6              29434387 241 + 175400573 ATATCTAATATTGAATCCTAGTCATATTAACCTGTGCTATTTAATTTGTAATCT--GAAAGTGATCAGTTACTAATAATTCTCCCAAAGTGTAACACAGATATTATTGTTTTTATTGTTTTGTACTTTTCAAACCAGTCAAGCAAACTTTATGCAG------------CAGAACAACAAGAATGAGTTTTCTCACTTTATCAAACTGAAGGG-AGGAGATAGGT-GCTTGCATAAGCTCTGGCAACTTGTATATGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29670190 241 + 173848474 ATATCTAATATTGAATCCTAGTCATATTAACCTGTGCTATTTAATTTGTAATCT--GAAAGTGATCAGTTACTAATAATTCCCCCAAAGTGTAACACAGATATTATTGTTTTTATTGTTTTGTACTTTTCAAACCAGTCAAGCAAACTTTATGCAG------------CAGAACAACAAGAATGAGTTTTCTCACTTTATCAAACTGAAGGG-AGGAGATAGGT-GCTTGCATAAGCTCTGGCAACTTGTATATGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5460736 241 +   6154872 ATAACTAATATTGAATCCTAGTCATATTAACCTGTGCTATTTAATTTGTAATCT--GAAAGTGATCAGTTACTAATAATTCACCCAAAGTGTAACACAGATATTATTGTTTTTATTGTTTTGTACTTTTCAAACCAGTCAAGCAAACTTTATGCAG------------CAGAACAACAAGAATGAGTTTTCTCACTTTATCAAACTGAAGGG-AGGAGATAGGT-GCTTGCATAAGCTCTGGCAACTTGTATATGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29625797 253 + 172585720 ATATCTAATATTGAATCCTAGTCATATTAGCCTGTACTATTTAATTTGTAATCT--GAAAGAGATCAGTTACCAATAATTCCCCCAAAGAGTAACACAGATATTATTGTTTTTATTGTTTTGTACTTTTCAAACCAATCAAACAAACTTTATGCAGTTTTATCACAAGTAGAACAACAAGAATGAGTTTTCTCACTTTATCAAACTGAAGGG-AGGAGATAGGT-GCTTGTGTAAGCTCTGGCAACTTGTATGTGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29288852 253 - 170955103 ATATCTAATATTGAATCCTAGTCATATTAGCCTGTACTATTTAATTTGTAATCT--GAAAGAGATCAGTTACCAATAATTCCCCCAAAGAGTAACACAGATATTATTGTTTTTATTGTTTTGTACTTTTCAAACCAATCAAACAAACTTTATGCAGTTTTATCACAAGTAGAACAACAAGAATGAGTTTTCTCACTTTATCAAACTGAAGGG-AGGAGATAGGT-GCTTGTGTAAGCTCTGGCAACTTGTATGTGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2296966 253 -   2996164 ATATCTAATATTGAATCCTAGTCATATTAGCCTGTACTATTTAATTTGTAATCT--GAAAGAGATCAGTTACCAATAATTCCCCCAAAGAGTAACACAGATATTATTGTTTTTATTGTTTTGTACTTTTCAAACCAATCAAACAAACTTTATGCAGTTTTATCACAAGTAGAACAACAAGAATGAGTTTTCTCACTTTATCAAACTGAAGGG-AGGAGATAGGT-GCTTGTGTAAGCTCTGGCAACTTGTATGTGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       22579 253 +    766320 ATATCTAATATTGAATACTAGTCATATTAGCCTGTACTATTTAATTTGTAATCT--GAAAGAGATCAGTTACCAATAATTCCCCCAAAGAGTAACACAGATATTATTGTTTTTATTGTTTTGTACTTTTCAAACCAATCAAACAAACTTTATACAGTTTTATCACAAGTAGAACAACAAGAATGAGTTTTCTCACTTTATCAAACTGAAGGG-AGGAGATAGGT-GCTTGTGTAAGCTCTGGCAACTTGTATGTGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28527795 257 -  71996105 ATATCTAATGTTGAATCCTAGCCATATTAGCCTGTGCTATTTAATTTGTAATCTGAGAAATAGATCACTTACCAAAAATTCCACCAAAGTTTAACACAGATATTATTGTTTTTATTGTTTTGTATTTTTCAAACCAGTCGAACAAACTTTATGCAGGTTTATCACAGATAGGACAACAGGAATGCGTTTTCTCACTTTATCAAACTGAAGGGAAAAAGATAGGTGGCTTGCATAACTTCTGGCAACTTGTATGTGAA
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012104165v1     2315255 253 +   2316924 ATATCTAATATTGAATCCTAGTCATATTAGCCTGTACTATTTAATTTGTAATCT--GAAAGAGATCAGTTACCAATAATTCCCCCAAAGAGTAACACAGATATTATTGTTTTTATTGTTTTGTACTTTTCAAACCAATCAAACAAACTTTATGCAGTTTTATCGCAAGTAGAACAACAAGAATGAGTTTTCTCACTTTATCAAACTGAAGGG-AGGAGATAGGT-GCTTGCGTAAGCTCTGGCAACTTGTATGTGAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2154734 240 -   3067355 ATATCTAATATTGAATCCTAGTCATATTAGCCTGTACTATTTAATTTGTAATCT--GAAAGAGATCAGTTACCAATAATTCCCCCAAAGAGTAACACAGATA---------TTATTGTTTTGTACTTTTCAAACCA----AACAAACGTTATGCAGTTTTATCACAAGTAGAACCACAAGAATGAGTCTTCTCACTTTATCAAACTGAAGGG-AGGAGATAGGT-GCTTGCATAAGCTCTGGCAACTTGTATGTGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171592374 254 - 171630274 ACATTTAATATTGAATCCTAGTTATGTTAGACTGCACTATTTAGTTTGTAATCTGAGAAATAGATGAGTTACCAACAAGTCCCCCAAAGATTAACCCAGATA---TTGTTTTCATTGTTTCGTACTTTTGAAACCAGTCAAAGAAACTTTATGCAGTTCTATCACAGGTAGGACAATAGGAATGAGTTTTCTCACTTTATCAAACTGAAGGGAAGAAGATAGGTGGTTTGTGTAACTTCTGGCAATTTGTATGTGAA
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            298247 5899 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=89478.000000
s hg38.chr6_GL000254v2_alt    453557 13 +   4827813 AAAATCAGGGTAA
s panTro5.chr6              29434628 13 + 175400573 AAAATCAGGGTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29670431 13 + 173848474 AAAATCAGGGTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5460977 13 +   6154872 AAAATCAGGGTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29626050 13 + 172585720 AAAATCAGGGTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29289105 13 - 170955103 AAAATCAGGGTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2297219 13 -   2996164 AAAATCAGGGTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       22832 13 +    766320 AAAATCAGGGTAA
i cerAty1.NW_012002711v1   C 0 I 353
s chlSab2.chr17             28528052 13 -  71996105 AAAATCAGGGTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012104165v1     2315508 13 +   2316924 AAAATCAGGGTAA
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2154974 13 -   3067355 AAAATCAGGGTAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171592628 13 - 171630274 AAAATCAGGGTAA
i calJac3.chr4             C 0 C 0
s dasNov3.JH570037            304146 13 -    859332 AAAGTCAGTATAA
i dasNov3.JH570037         I 5899 C 0
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1434088.000000
s hg38.chr6_GL000254v2_alt    453570 254 +   4827813 GGACAATACATTTTTAGCTCTGACGACCTGTTCCTAT-GTCAACAACACTGAAGGCAAAGTAGAAGCCCTGAGATGCTCCCCTTGTCAGGCCTAAACCTCATGTCAACGTTTGTGAACTGGGATTTCCAAAGCAGAAATGAATTTATGCGGCAAGCAATTTTACTGTAGAACTAACAGTGAAGCCAGC--TTTTTCCCAGATAGGAATGATGACTAACTGCACTGAAGCATCAGCTTCT--TTTTCCCTGTAAACttct
s panTro5.chr6              29434641 254 + 175400573 GGACAATACATTTTTAGCTCTGACGACCTGTTCCTAT-GTCAACAACACTGAAGGCAAAGTAGAAGCCCTGAGATGCTCCCCTTGTCAGGCCTAAACCTCATGTCAACGTTTGTGAACTGGGATTTCCAAAGCAGAAATGAATTTATGCGGCAAGCAATTTTACTGTAGAACTAACAGTGAAGCCAGC--TTTTTCCCAGATAGGAATGATGACTAACTGCACTGAAGCATCAGCTTCT--TTTGCCCTGTAAACttct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29670444 254 + 173848474 GGACAATACATTTTTAGCTCTGACGACCTGTTCCTAT-GTCAACAACACTGAAGGCAAAGTAGAAGCCCTGAGATGCTCCCCTTGTCAGGCCTAAACCTCATGTCAACGTTTGTGAACTGGGATTTCCAAAGCAGAAATGAATTTATGCGGCAAGCAATTTTACTGTAGAACTAACAGTGAAGCCAGC--TTTTTCCCAGATAGGAATGATGACTAACTGCACTGAAGCATCAGCTTCT--TTTGCCCTGTAAACttct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5460990 254 +   6154872 GGACAATACATTTTTAGCTCTGATGACCTGTTCCTAT-GTCAACAACACTGAAGGCAAAGTAGAAGCCCTGAGATGCTCCCCTTGTCAGGCCTAAACCTCATGTCAACGTTTGTGAACTGGGATTTCCAAAGCAGAAATGAATTTATGTGGCAAGCAATTTTACTGTAGAACTAACAGTGAAGCCAGC--TTTTTCCCAGATAGGAATGATGACTAACTGCACTGAAGCATCAGCTTCT--TTTGCCCTGTAAACttct
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29626063 254 + 172585720 GGACAATACATTTTTAGCTCTGACGACTCATTCCTAT-GTCCACAACACTTAAGGCAAAGTAGAAGCCCTGAGATGCTCTGCTTGTGAGGTCTAAACCTCATGTCAATGTTTGTGAACTGGAATTTCCAAAGAACAAATGAATGTATGAGGCAAGCAACTTTACTGTAGAACTAACAGTGAAGCCAGC--TTTTTTCCAGATAGGAATGATGACTAACTGCACTGAAGCATCAGCTTCT--TTTGCCCTGTAAattttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29289118 254 - 170955103 GGACAATACATTTTTAGCTCTGACGACTCATTCCTAT-GTCCACAACACTTAAGGCAAAGTAGAAGCCCTGAGATGCTCTGCTTGTGAGGTCTAAACCTCATGTCAATGTTTGTGAACTGGAATTTCCAAAGAACAAATGAATGTATGAGGCAAGCAACTTTACTGTAGAACTAACAGTGAAGCCAGC--TTTTTTCCAGATAGGAATGATGACTAACTGCACTGAAGCATCAGCTTCT--TTTGCCCTGTAAATTTtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2297232 254 -   2996164 GGACAATGCATTTTTAGCTCTGACGACTCATTCCTAT-GTCCACAACACTTAAGGCAAAGTAGAAGCCCTGAGATGCTCTGCTTGTGAGGTCTAAACCTCATGTCAATGTTTGTGAACTGGAATTTCCAAAGAACAAATGAATGTATGAGGCAAGCAACTTTACTGTAGAACTAACAGTGAAGCCAGC--TTTTTTCCAGATAGGAATGATGACTAACTGCACTGAAGCATCAGCTTCT--TTTGCCCTGTAAattttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       23198 254 +    766320 GGACAATACATTTTTAGCTCTGACGACCCATTCCTAT-GTCCACAACACTTAAGGCAAAGTAGAAGCCCTGAGATGCTCCGCTTGTGAGGTCTAAACCTCATGTCAATGTTTGTGAACTGGAATTTCCAAAGAACAAATGAATGTATGAGGCAAGCAACTTTACTGTAGAACTAACAGTGAAGCCAGC--TTTTTTCCAGATAGGAATGATGACTAACTGCACTGAAGCATCAGCTTCT--TTTGCCCTGTAAattttt
i cerAty1.NW_012002711v1   I 353 C 0
s chlSab2.chr17             28528065 254 -  71996105 GGGCAATACCTTTTTAGCTTTGGAGGACCATTCCTGT-GTCAACAACACTGAAGGCAAAGTAGAAGCCCTGAGATGCTCCCCTTGTCAGCCCTAAACCTTATGAAAACGTTTGTGAACTGGAATTTCCAAAGCACACATGAATTTGTGCCACAAGCAACTTTACTGAAGAACTAACAGTGAAGCCAGC--TTTTTCCCAGATAGGAATGAAGGTTAACTGCACTGAAGCATCAGCTTTT--TTCACCCTGTAAATTTCT
i chlSab2.chr17            C 0 I 53896
s manLeu1.NW_012104165v1     2315521 254 +   2316924 GGACAATACATTTTTAGCTCTGACGACCCATTCCTAT-GTCCACAACACTTAAGGCAAAGTAGAAGCCCTGAGATGCTCCGCTTGTGAGGTCTAAACCTCATGTCAATGTTTGTGAACTGGAATTTCCAAAGAACAAATGAATGTATGAGGCAAGCAACTTTACTGTAGAACTAACAGTGAAGCCAGC--TTTTTTCCAGATAGGAATGATGACTAACTGCACTGAAGCATCAGCTTCT--TTTGCCCTGTAAattttt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2154987 256 -   3067355 GGACAATACGTTTTTAGCTCTGACGACCCATTCCTAT-GTCAACAACACTTAAGGCAAAATAGAAGCCCTGAGATGCTCCGCTTGTCGGGTCTAAACCTCATGTCAATATTTGTGAACTGGAATTTCCAAAGAACAAATGAATGTATGTGGCAAGCAACTTTACTGTAGAACTAACAGTGAAGCCAGCTTTTTTTTCCAGATAGGAATGATGACTAACTGCTCTGAAGCATCAGCTTCT--TTTGCCCTGTAAattttt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171592641 250 - 171630274 GGACAATACATTTTTAGCTCTGGAGACCCATTCCCTT-GTCAACAACACTGAAGGCAAAGTAGAAGCCCTGAGATTCTCCCCTCACCAGCCCTAAACC----ATCAATGTTTGCAAACTGGCATTTTCACAGCACACATGAATTTGTGCCACAAGCAACTTTACTGAAGAACTAACAATGAAGCCAGC--TCTTCCCCAGATAGGAGTGAAGGCTAACTTCACTAACGCACCAGCTTCT--CTGGCCCTGTAAGTTTCT
i calJac3.chr4             C 0 I 2696
s dasNov3.JH570037            304159 247 -    859332 AGACAACAGATTTTCAGCTCTGGAGGGCCCTTCTTATGGTCAAAAACCCCTCA-GCAAACTAGAAGCTCTAAGAGCCTCTTACCGCCACCTCTAAAGCCCCAAATAACATTGGTGGGCCAGTAT--------CACACATGGATTTGGGTCA-AAGCAACTTCACAGAATTCCTAACA-TGAAACCAAC-ATTTCCCCCAGGCAAGGATGGAGGCTAAGTTCACTACAGCACCAGCCTCTTCTTTAGCCTTTAATTTTCC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=13755.000000
s hg38.chr6_GL000254v2_alt    453824 3 +   4827813 gtc
s panTro5.chr6              29434895 3 + 175400573 gtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29670698 3 + 173848474 gtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5461244 3 +   6154872 gtc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29626317 3 + 172585720 gtc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29289372 3 - 170955103 gtc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2297486 3 -   2996164 gtc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       23452 3 +    766320 gtc
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012104165v1     2315775 3 +   2316924 gtc
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2155243 3 -   3067355 gtc
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            304406 3 -    859332 CTC
i dasNov3.JH570037         C 0 I 9342
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e calJac3.chr4             171592891 2696 - 171630274 I
e chlSab2.chr17             28528319 53896 -  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1217952.000000
s hg38.chr6_GL000254v2_alt    453827 305 +   4827813 aggaataccacaaaagtgtgattgtgttctccttagtgcatcctatcagtatgtaca---tatttctttattctgttatgggcaatattggctttgattacttggttaatgttgtatctgccaggcatctttactataaaaattagtgtttttctcagtaatatataagtgtc-atgtggggaagtatgttgagattaggtagcattctgttttttaactagctttcatccactagttttattagtaagcatcccttaatattccttcccagaaacaattattactatagtggtttccaagtaatgatt
s panTro5.chr6              29434898 305 + 175400573 aggaataccacaaaagtgtgattgtgttctccttagtgcatcctatcagtatgtaca---tatttctttattctgttatgggcaatattggctttgattacttggttaatgttgtatctgccaggcatctttactataaaaattagtgtttttctcagtaatatataagtgtc-atgtggggaagtatgttgagattaggtagcattctgttttttaactagctttcatccactagttttattagtaagcatcccttaatattccttcccagaaacaatgattactatagtggtctccaagtaatgatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29670701 305 + 173848474 aggaataccacaaaagtgtgattgtgttctccttagtgcatcctatcagtatgtaca---tatttctttattctgttatgggcaatattggctttgattacttggttaatgttgtatctgccaggcatctttactataaaaattagtgtttttctcagtaatatataagtgtc-atgtggggaagtatgttgagattaggtagcattctgttttttaactagctttcatccactagttttattagtaagcatcccttaatattccttcccagaaacaattattactatagtggtctccaagtaatgatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5461247 306 +   6154872 aggaataccacaaaagtgtgattgtgttctccttagtgcatcctatcagtatgtaca---tatttctttattctgttatgggcaatattggctttgattacttggttaatgttgtatctgccaggcatctttactataaaaattagtgtttttctcagtaatatataagtgtcaatgtggggaagtatgttgagattaggtagcattctgttttttaactagctttcatccactagttttattagtaagcatcccttaatattccttcccagaaacaattattactatagtggtttccaagtaatcatt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29626320 308 + 172585720 aggaataccacaaaagtgcgattgtgttctccttagttcatcttatcagaatgtacatggtatttctttattctgttacgggcaatattggctttgattacttggttaatgttgtatctgccaggcatctttactataaaaattagtgcttttctcagtaatatataaatgtc-atgtggggaagtatgttgagattaggtagcattctgttttttaactagctttcatccactagttttattagtaagcatcccttaatagtccttcccagaaacacttattactatagtggtttccaagtaatgatt
i rheMac8.chr4             C 0 I 8174
s macFas5.chr4              29289375 308 - 170955103 aggaataccacaaaagtgcgattgtgttctccttagttcatcttatcagaatgtacatggtatttctttattctgttacgggcaatattggctttgattacttggttaatgttgtatctgccaggcatctttactataaaaattagtgcttttctcagtaatatataaatgtc-atgtggggaagtatgttgagattaggtagcattctgttttttaactagctttcatccactagttttattagtaagcatcccttaatagtccttcccagaaacacttattactatagtggtttccaagtaatgatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2297489 308 -   2996164 aggaataccacaaaagtgcgattgtgttctccttagttcatcttatcagaatgtacatggtatttctttattctgttacgggcaatattggctttgattacttggttaatgttgtatctgccaggcatgtttactataaaaattagtgcttttctcagtaatatataaatgtc-atgtggggaagtatgttgagattaggtagcattctgttttttaactagctttcatccactagttttattagtaagcatcccttaatagtccttcccagaaacacttattactatagtggtttccaagtaatgatt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       23455 308 +    766320 aggaataccacaaaagtgcgattgtgttctccttagttcatcttatcagaatatacatggtatttctttattctgttacgggcaatattggctttgattacttggttaatgttgtatctgccaggcatctttactataaaaattagtgcttttctcagtaatatataaatgtc-atgtggggaagtatgttgagattaggtagcattctgttttttaactagctttcatccactagttttattagtaagcatcccttaatagtccttcccagaaacacttattactatagtggtttccaagtaatgatt
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012104165v1     2315778 308 +   2316924 aggaataccacaaaagtgtgattgtgttctccttagttcatcttatcagaatgtacatggtatttctttattctgttacgggcaatattggctttgattacttggttaatgttgtatctgccaggcatctttactataaaaattagtgtttttctcagtaatatataagtgtc-atatggggaagtatgttgagattaggtagcattctgttttttaactagctttcatccactagttttattagtaagcatcccttaatagtcctttccagaaacacttattactatagtggtttccaagtaatgatt
i manLeu1.NW_012104165v1   C 0 C 0
s colAng1.NW_012115566v1     2155246 308 -   3067355 aggaataccacaaaagtacgattgtgttctccttaattcatcctgttggaatgtacatggtatttctttattctgttacgggcaatattggctttgattactcggttaatgttgtatctgccagatatctttactataaaaattagtgtttttctcagtaatatataagtgtc-atgtggggaagtatgttgagattaggtagcattctgttttttaactagctttcatacactagttttattagtaagcatcccttaatagtccttcccagaaacacttattactgtagtggtttccaagtaatgatc
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            304409 9342 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e calJac3.chr4             171592891 2696 - 171630274 I
e chlSab2.chr17             28528319 53896 -  71996105 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=2607774.000000
s hg38.chr6_GL000254v2_alt    454132 844 +   4827813 cttaaagttccatcattccttccaaatttaataattTGTGTGGCAGGCTAAATACTTCCTCTCCTTCTCTCAAATGATCACAACCTAATCACTGGGATAAGTTATTATATATTACCTTACGTGGCAAAATTAAttttattttttatattttaagtcctggaagacatgtgcggaatgtgcaggtttgttacataggcatacatgtgccatgctgg--tttgctgcacccatcaactcatcatctacattaggtatttctcctaatgctatctct-ccctagccctcccaccttctaacagaccctactgtgtgatgttcccatccctgtgtccatgtgttctcactgttcaactcccacttatgagtgagaacatgcagtgtttggttttctgttcctg-ttttagtttgctgagaatgatggtttccagtttcatccatgtccctacaaaggacataaactcgttcttttt--tatggctgcatagtattccatggtgtatatgtgctacattttcttattccagtctatcattgatgggcatttgggttggttccaagtctttactattatgaatggtgctgcaataaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttgggtatatacctagtaatgggattgctgagtcaaatggtattgctggttctagatccttgaggaattgccccactgtcttccacaatggatgaactaatttacattctcaccaacagtgtaaaagcattcctatttctccacatcctctccagcatctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatggtatctc
s panTro5.chr6              29435203 844 + 175400573 cttaaagttccatcattccttccaaatttaataattTGTGTGGCAGGCTAAATACTTCCTCTTCTTCTCTCAAATGATCACAACCTAATCACTGAGATAAGTTATTATATATTACCTTATGAGGCAAAATTAAttttattttttatattttaagtcctggaagacatgtgcagaatgtgcaggtttgtgacataggcatacatgtgccatgctgg--tttgctgcacccatcaactcatcatctacattaggtatttctcctaatgctatctct-ccctagccctcccaccttctaacagaccctactgtgtgatgttcccatccctgtgtccatgtgttctcactgttcaactcccacttatgagtgagaacatgcagtgtttggttttctgttcctg-ttttagtttgctgagaatgatggtttccagtttcatccatgtccctacaaaggacataaactcgttcttttt--tatggctgcatagtattccatggtgtatatgtgctacattttcttattccagtctatcattgatgggcatttgggttggttccaagtctttgctattatgaatggtgctgcaataaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttgggtatatacctagtaatgggattgctgagtcaaatggtattgctggttctagatccttgaggaattgccccactgtcttccacaatggatgaactaatttacattctcaccaaccgtgtaaaagcgttcctatttctccacatcctctccagcatctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatggtatctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29671006 844 + 173848474 cttaaagttccatcattccttccaaatttaataattTGTGTGGCAGGCTAAATACTTCCTCTCCTTCTCTCAAATGATCACAACCTAATCACTGGGATAAGTTATTATATATTACCTTATGAGGCAAAATTAAttttattttttatattttaagtcctggaagacatgtgcagaatgtgcaggtttgtgacataggcatacatgtgccatgctgg--tttgctgcacccatcaactcatcatctacattaggtatttctcctaatgctatctct-ccctagccctcccaccttctaacagaccctactgtgtgatgttcccatccctgtgtccatgtgttctcactgttcaactcccacttatgagtgagaacatgcagtgtttggttttctgttcctg-ttttagtttgctgagaatgatggtttccagtttcatccatgtccctacaaaggacataaactcgttcttttt--tatggctgcatagtattccatggtgtatatgtgctacattttcttattccagtctatcattgatgggcatttgggttggttccaagtctttgctattatgaatggtgctgcaataaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttgggtatatacctagtaatgggattgctgagtcaaatggtattgctggttctagatccttgaggaattgccccactgtcttccacaatggatgaactaatttacattctcaccaacagtgtaaaagcgttcctatttctccacatcctctccagcatctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatggtatctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5461553 844 +   6154872 cttaaagttccatcattccttccaaatttaataattTGtgtggcaggctaaatacttcctctccttctctcaaatgatcacaacctaatcactgggataagttattatatattaccttacgtggcaaaaTTAAttttattttttatattttaagttctggaagacatgtgcggaatgtgcaggtttgttacataggcatacatgtgccatgctgg--tttgctgcacccatcaactcatcatctacattaggtatttctcctaatgctatctct-ccctagccctcccaccttctaacagaccctactgtgtgatgttcccatccctgtgtccatgtgttctcactgttcaactcccatttatgagtaagaacatgcagtgtttggttttctgttcctg-tttcagtttgctgagaatgatggtttccagtttcatccatgtccctacaaaggacataaactcattcttttt--tatggctgcatagtattctatggtgtatatgtgctacattttcttattccagtctatcattgatgggcatttgggttggttccaagtctttgctattatgaatggtgctgcaataaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttgagtatatacctagtaatgggattgctgagtcaaatggtattgctggttctagatccttgaggaattgccccactgtcttccacaatggatgaactaatttacattctcaccaacagtgtaaaagcgttcctatttctccacatcctctccagcatctgttgtttcctgactttttaatgatcacaattctaactggtgtgagatggtatctc
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29289683 836 - 170955103 attaaagttccataattccttccaaattaattagtttgtgTGgcaggctaaatacttcctctccttctctcaaatgatcataccctaatcactgggacaagttattatatgttaccttatatggcaaaatgtattttatttTTTATattttaagttctggaagacatgtgcagaatgtgcaggtttgt----------tatacatgccatggtgg--tttgctgcactcatcaacccatcatctacattaggtatttctcctaatgctctctctcccctagcccacccaccttctgacggaccctgctgtgtgatgttcccttccctgtgtccatattttctcattgttcaactctcacttatgagtgggaacatgcagtgtttggttttctgttcctgtttttagtttgctgagaataatcatttccagtttcatccatgtccctacaaaggacatgaattcatccttttt--tatggctgcatagtattccatggtgtatatatgttacattttctttatccggtctatcattgatgggcatttgagttggttccaagtctttgctattgtgaatggtgctgcaataaacatacatgtgcatttgtctttatagtagaatgatttataatcctttgggtgtatacccagtaatgggattgctgggttcaatggtattgctcgttctagatccttgaggaattgccacactgtcttccacaatggatgaactaatttacattctcaccaacagtgtaaaagcattcctatttctccacatcctctccagcatctgttgtttcctgactttttaaagatcaccattctaactggtgtgagatggtatctc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2297797 836 -   2996164 attaaagttccataattccttccaaattaattagttTGtgtggcaggctaaatacttcctctccttctctcaaatgatcataccctaatcactgggacaagttattatatgttaccttatatggcaaaatgtattttATTTTttatattttaagttctggaagacatgtgcagaatgtgcaggtttgt----------tatacatgccatggtgg--tttgctgcactcatcaacccatcatctacattaggtatttctcctaatgctctctctcccctagcccacccaccttctgacggaccctgctgtgtgatgttcccttccctgtgtccatattttctcattgttcaactcccacttatgaatgggaacatgcagtgtttggttttctgttcctgtttttagtttgctgagaataatcatttccagtttcatccatgtccctacaaaggacatgaattcatccttttt--tatggctgcatagtattccatggtgtatatatgttacattttctttatccggtctatcattgatgggcatttgagttggttccaagtctttgctattgtgaatggtgctgcaataaacatacatgtgcatttgtctttatagtagaatgatttataatcctttgggtgtatacccagtaatgggattgctgggttcaatggtattgctcgttctagatccttgaggaattgccacactgtcttccacaatggatgaactaatttacattctcaccaacagtgtaaaagcattcctatttctccacatcctctccagcatctgttgtttcctgactttttaaagatcaccattctaactggtgtgagatggtatctc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       23763 836 +    766320 attaaagttccataattccttccaaattaattagttTGtgtggcaggctaaatacttcctctccttctctcaaatgatcataccctaatcactgggacaagttattatatgttaccttatatggcaaaatgaattttATTTTttatattttaagttctggaagacatgtgcagaatgtgcaggtttgt----------tatacatgccatggtgg--tttgctgcactcatcaacccatcatctacattaggtatttctcctaatgctatctctcccctagcccacccaccttctgacggaccctgctgtgtgatgttcccctccctgtgtccatattttctcattgttcaactcccacttatgagtgggaacatgcagtgtttggttttctgttcctgtttttagtttgctgagaataatcatttccagtttcatccatgtccctacaaaggacatgaattcatccttttt--tgtggctgcatagtattccatggtgtatatatgttacattttctttatccggtctatcattgatgggcatttgggttggttccaagtctttgctattgtgaatggtgctgcaataaacatacatgtgcatttgtctttatagtagaatgatttataatcctttgggtgtatacccagtaatgggattgctgggttcaatggtattgctcgttctagatccttgaggaattgccacactgtcttccacaatggatgaactaatttacattctcaccaacagtgtaaaagcattcctatttctccacatcctctccagcatctgttgtttcctgactttttaaagatcaccattctaactggtgtgagatggtatctc
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012104165v1     2316086 838 +   2316924 attaaagttccataattccttccaaattaattagttTGtgtggcaggctaaatacttcctctccttctctcaaatgatcataccctaatcactgggacaagttattatatgttaccttatatggcaaaatgaattttATTTTttatattttaagttctggaagacatgtgcagaatgtgcaggtttgt----------tatacatgccatggtggtatttgctgcactcatcaacccatcatctacattaggtatttctcctaatgctatctcttccctagcccacccaccttctgacggaccctgctgtgtgatgttcccctccctgtgtccatattttctcattgttcaactcccacttatgagtgggaacatgcagtgtttggttttctgttcctgtttttagtttgctgagaataatcatttccagtttcatccatgtccctacaaaggacatgaattcatccttttt--tatggctgcatagtattccatggtgtatatatgttacattttctttatccggtctatcattgatgggcatttgggttggttccaagtctttgctattgtgaatggtgctgcaataaacatacatgtgcatttgtctttatagtagaatgatttataatcctttgggtgtatacccagtaatgggattgctgggttcaatggtattgctcgttctagatccttgaggaattgccacactgtcttccacaatggatgaactaatttacattctcaccaacagtgtaaaagcattcctatttctccacatcctctccagcatctgttgtttcctgactttttaaagatcaccattctaactggtgtgagatggtatctc
i manLeu1.NW_012104165v1   C 0 N 0
s colAng1.NW_012115566v1     2155554 848 -   3067355 attaaagttctgtaattccttccaaattaattagttTGtgtggcaggctaaatacttcctctccttctctcaaatgatcataccctaatcactgagacaagttattatatgttaccttatatggcaacatgaattttATTTTttatattttaagttctggaagacatgtgcagaatgtgcaggtatgttacataggcatatacatgccatggtgg--tttgttgcactcatcaacccatcatctacattaggtatttctcctaatgctatctctcccctagcccacccaccttctgacagaccctgctgtgtgatgttcccctcactgtgtccatgttctctcattgttcaactcccacttatgagtgagaacatgcagtgtttggttttctgttcttgtttttagtttgctgagaacaatcatttccagtttcatccatgtccctacaaaggacatgaattcatccttttttatatggctgcatagtattccatggtgtatatatgttacattttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgctattgtgaatggtgctgcaataaacatacatgtgcatttgtctttatagtagaatgatttataatcctttgggtgtatacccagtaatgggattgctgggttcaatggtattgctcgttctagatccttgaggaattgccacactgtcttccacaatggatgaactaatttacattctcaccaacagtgtaaaagcattcctatttctccacatcttctccagcatctgttgtttcctgactttttaaagatcaccattctaactggtgtgagatggtatctc
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            304409 9342 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e calJac3.chr4             171592891 2696 - 171630274 I
e chlSab2.chr17             28528319 53896 -  71996105 I
e rheMac8.chr4              29626628 8174 + 172585720 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1537582.000000
s hg38.chr6_GL000254v2_alt    454976 669 +   4827813 attgtggttttgatttacatttctctaatgaccagagataatgagctttttttcatatgtttgttggctgcatcaatgtcttttttagagaactgtctgttcatatccttcgcccactttttgatggggttg--ttttttcttgtaaatttgtttaaattctttgtagactctggatattagccctttgccagatggatagattgcaaaaattttctcccattctgtaggctgcttgtccagaaggtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttgtcttttcttgccattgcttttggtgttttagtcatgaagtctttgcccatgcctatatcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtcttaagtttaagtctttcatctgtcttgagttaattttt-gtgtaaggtgtaaggaaggggtccagtttcagttttctgcatatggctagccagttttcctaacaccatttatta-aataaggaatcctttccccattgcttgtttttgtctggtttgtcaaagatcaggtggttgtagacgtgtggcattatttcagaggcctctgtcctgttcca-ttggtctatatatccgttttggtacacataccatgctgttttggtt
s panTro5.chr6              29436047 670 + 175400573 attgtggttttgatttacatttctctaatgaccagagataatgagctttttttcatatgtttgttggctgcatcaatgtcttttttagagaactgtctgttcatatccttcgcccactttttgatggggttg-tttttttcttgtaaatttgtttaaattctttgtagactctggatattagccctttgccagatggatagattgcaaaaattttctcccattctgtaggctgcttgtccagaaggtttcttttgctgtgcagaagctctttagtttaattagatcgcatttgtcaattttgtcttttcttgcccttgcttttggtgttttagtcatgaagtctttgcccatgcctatatcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtcttacgtttaagtctttcatctgtcttgagttaattttt-gtgtaaggtgtaaggaaggggtccagtttcagttttctgcatatggctagccagttttcccaacaccatttatta-aataaggaatcctttccccattgcttgtttttgtctggtttgtcaaagatcaagtggttgtagacgtgtggcattatttcagaggcctctgtcctgttcca-ttggtctatatatccgttttggtacacataccatgctgttttggtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29671850 669 + 173848474 attgtggttttgatttacatttctctaatgaccagagataatgagctttttttcatatgtttgttggctgcatcaatgtcttttttagagaactgtctgttcatatccttcgcccactttttgatggggttg--ttttttcttgtaaatttgtttaaattctttgtagactctggatattagccctttgccagatggatagattgcaaaaattttctcccattctgtaggctgcttgtccagaaggtttcttttgctgtgcagaagctctttagtttaattagatcgcatttgtcaattttgtcttttcttgcccttgcttttggtgttttagtcatgaagtctttgcccatgcctatatcctgaatggtattgcctaggttttcttctagggtttttatgggtttaggtcttacgtttaagtctttcatctgtcttgagttaattttt-gtgtaaggtgtaaggaaggggtccagtttcagttttctgcatatggctagccagttttcccaacaccatttatta-aataaggaatcctttccccattgcttgtttttgtctggtttgtcaaagatcaggtggttgtagacgtgtggcattatttcagaggcctctgtcctgttcca-ttggtctatatatccgttttggtacacataccatgctgttttggtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5462397 670 +   6154872 attgtggttttgatttacatttctctaatgaccagagataatgagctttttttcatatgttcgttggctgcatcaatgtctttcttagagaactgtctgttcatatccttcgcccactttttgatggggttg-tttttttcttgtaaatttgtttaaattctttgtagactctggatattagccctttgccagatggatagatggcaaaaattttctcccattctgtaggctgcttgtccagaaggtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttgtcttttcttgccattgcttttggtgttttagtcatgaagtctttgcccatgcctatatcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtcttacatttaagtctttcatctgtcttgagttaattttt-gtgtaaggtgtaaggaaggggtccagtttcagttttctgcatatggctagccagttttcccaataccatttatta-aataaggaaacctttccccattgcttgtttttgtctggtttgtcaaagatcaggtggttgtagatgtgtggcattatttcagaggcctctgtcctgttccg-ttggtctatatatccgttttggtacacataccatgctgttttggtt
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29290519 661 - 170955103 attgtggttttgatttgcatttctctaatgatctgtgattatgagcttcttttc--atgtttgttgactgtataaatgtcttttttagaaaa----ctgttcacatccttcatccacttcttgatggggttgttttttttcttgtaaatttgtttaagttctttgtagattctggatattagccctttgtcagatggatagattgcaaaatttttctcccattctgtaggctgcctgttcagaaggtttcttttactgtgcagaagctctttagtttaattagattccatttgtcaattttggcttctgttgccatcgcttttagtgttttagtcatgaagtctttgtccatgccgatatcctcaacggtattgcctaggtttttttctagggattttatggtttttggtcttacatttaagtcttcaatctgtcttgagttaattttt-gcataaggtgtaaagaaggggtccagtttcagttttctgcatatggctagccagttttcccaacaccattt-----attaaggaatcctttccccattgcttgtttttgtcaggtttgttgaagatcagatggttgtagatgtgtggcgttatttcagaggcctctgtcccgttcca-ttggtctatatatccgtcttggtacatataccatgctgttttggtt
i macFas5.chr4             C 0 I 6169
s macNem1.NW_012011356v1     2298633 664 -   2996164 attgtggttttgatttgcatttctctaatgatctgtgattatgagcttcttttc--atgtttgttgactgtataaatgtcttttttagaaaa----ctgttcacatccttcatccactttttgatggggttgttttttttcttgtaaatttgtttaagttctttgtagattctggatattagccctttgtcagatggatagattgcaaaatttttctcccattctgtaggctgcctgttcagaaggtttcttttactgtgcagaagctctttagtttaattagattccatttgtcaattttggcttctgttgccatcgcttttagtgttttagtcatgaagtctttgtccatgccgatatcctcaacggtattgcctaggtttttttctagggattttatggtttttggtcttacatttaagtcttcaatctgtcttgagttaatttttggcataaggtgtaaag-aggggtccagtttcagttttctgcatatggctagccag-tttcccaataccatttattaaattaaggaatccttt-cccattgcttgtttttgtcaggtttgttgaagatcagatggttgtagatg-gttgcgttatttcagaggctcttgtcccgttccagttggtctatatatccgtctgtgtacatataccatgctgttttggtt
i macNem1.NW_012011356v1   C 0 I 6174
s cerAty1.NW_012002711v1       24599 665 +    766320 attgtggttttgatttgcatttctctaatgatctgtgattatgagctttttttc--atgtttgttgactgtataaatgtcttttttagaaaa----ctgttcacatccttcatccactttttgatggggttgttttttttcttgtaaatttgtttaagttctttgtagattctggatattagccctttgtcagatggatagattgcaaaatttttctcccattctgtaggctgcctgttcagaaggtttcttttactgtgcagaagctctttagtttaattagattccatttgtcaattttggcttctgttgccatcgcttttggtgttttagtcatgaagtctttgtccatgccgatatcctcaacggtattgcctaggtttttttctagggattttatggtttttggtcttacatttaagtcttcaatctgtcctgagttaattttt-gcataaggtgtaaagaaggggtccagtttcagttttctgcatatggctagccagttttcccaacaccatttatta-aataaggaatcctttccccattgcttgtttttgtcaggtttgttgaagatcagatggttgtagatgtgtggtgttatttcagaggcctctgtcccgttcca-ttggtctatatatccgtcttggtacatataccatgctgttttggtt
i cerAty1.NW_012002711v1   C 0 I 3722
s colAng1.NW_012115566v1     2156402 660 -   3067355 attgcggttttgatttgcatttctctaatgatctgtgattatcagctttttttc--atgtttgttgactgtataaatgtcttttttagaaaa----ctgttcacatcctttatccactttttgatggggttg-tttttctcttgtaaatttgtttaagttctttgtaggttctggatattagccctttgtca----gatagattgcaaaatttttctcccattctgtaggctgcttgttcagaaggtttcttttgctgggcagaagccctttagtttaattagatcccatttgtcaattttggcttctgttgccattgcttttggtgttttagtcatgaagtctttgtccatgctgatatcctcaatggtattgcctaggtttttttctagggatttcatggtttttgatcttacatttaagtcttcaatctgtcttgagttaattttt-gcataaggtgtaaagaaggggtccaatttcagttttctgcatatggctagccagttttcccaacaccatttatta-aataaggaatcctttccccattgcttgtttttgtcaggtttgttgaagatcaggtggttgtagatgtgtggtgttatttcagaggcctctgtctcattcca-ttggtctatatatccgtcttggtacatataccatgctgtttaggtt
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            304409 9342 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e calJac3.chr4             171592891 2696 - 171630274 I
e chlSab2.chr17             28528319 53896 -  71996105 I
e rheMac8.chr4              29626628 8174 + 172585720 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=56540.000000
s hg38.chr6_GL000254v2_alt    455645 11 +   4827813 actgtattctt
s panTro5.chr6              29436717 11 + 175400573 actgtattctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29672519 11 + 173848474 actgtattctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5463067 11 +   6154872 actgtattctt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29634802 11 + 172585720 actgtattctt
i rheMac8.chr4             I 8174 C 0
s macFas5.chr4              29297349 11 - 170955103 ACTGtattctt
i macFas5.chr4             I 6169 C 0
s macNem1.NW_012011356v1     2305471 11 -   2996164 actgtattctt
i macNem1.NW_012011356v1   I 6174 C 0
s cerAty1.NW_012002711v1       28986 11 +    766320 actgtattctt
i cerAty1.NW_012002711v1   I 3722 C 0
s chlSab2.chr17             28582215 11 -  71996105 ACTGtattctt
i chlSab2.chr17            I 53896 C 0
s manLeu1.NW_012099655v1         483 11 -    352859 actgtattctt
i manLeu1.NW_012099655v1   N 0 C 0
s colAng1.NW_012115566v1     2157062 11 -   3067355 actgtattctt
i colAng1.NW_012115566v1   C 0 T 40175
e dasNov3.JH570037            304409 9342 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e calJac3.chr4             171592891 2696 - 171630274 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=4700912.000000
s hg38.chr6_GL000254v2_alt    455656 1211 +   4827813 gtagtatagtttaaagtcaggtagcatgatgcctccaactttctccttcttgcttaggattgtcttggttatacgggctctgttttggttccatgtgatatttaaagt-agtttttttctaattctgtgaagaaagtcagtggtagcttgattgggatagcactgaatctataaattactttgggcagtatggccattttcatgatattgattctttggtatgtttttgcagtggctggtactgatttttcttttccatatttagtacttccttcaggaactcccgtaaggcaggactggtggtgacgaaatctctcagcatttgcttgtctgtaaaggattttgtttctccttcacttatgaagcttagtttggctggatatgaaattctgggctgaaaattcttttctttaagaattttgaatattcgttctcactctcccctcgcttgtagggtttttgctgagagacctgctgttagtctgatgggcttccctttgtgggtaacgcgacctttctctctggctgcccttaacattttttttctttcatttcaaccttggtgaatattatgattatgtgtcttggggttgctgttcttgaggaatatcttagtatttttctctgcatttcctgaatttgaatgttgacctgtcttgctaggttggggaaattctcctggattatattctgaagagtgttttcaagcttggttccattctccccatcactttcaggtacaccaatcaaacgtaggtttggtcttttcacatagtcccatatttcttggaggctttgttcattcattttcattcttttttctctaattttgtcttcacgctttatttcattaagttgaatttcaatctctgatatcctttcttctgcttaatcaattcggctattgatacctttgtatgcttcacaaagttctcgtgc--tgtttttcagctccatcaggtcatttatgttcttctctaaactgattaatttagttaggaagtcttctatcttttcttcaaggttcttagcttccttgcattgggttaaaacatgctcctttagcttggaggagtttgttattacccaccttctgaagcctacttgtgtcaattcgtcaaactcattccccatccagttttgttcccttgctcgtgaggagttgtgatcctttggaggagaagaggcgttctggattttggaattttcagcCT
s panTro5.chr6              29436728 1210 + 175400573 gtagtatagtttaaagtcaggtagcatgatgcctccaactttctccttcttgcttaggattgtcttggttatacgggctctgttttggttccatgtgaaatttaaagt-agtttttttctaattctgtgaagaaagtcagtggtagcttgattgggatagcactgaatctataaattactttgggcagtatggccattttcatgatattgattctttggtatgtttttgcagtggctggtactgatttttcttttccatatttagtacttccttcaggaactcccgtaaggcaggactggtggtgacgaaatctctcagcatttgcttgtctgtaaaggattttgtttctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattcttttctttaagaattttgaatattcgttctcactctcccctcgcttgtagggtttttgctgagagacctgctgttagtctgatgggcttccctttgtgggtaatgcgacctttctctctggctgcccttaaca-tttttttctttcatttcaaccttggtgaatattatgattatgtgtcttggggttgctgttcttgaggaatatcttagtatttttctctgcatttcctgaatttgaatgttgacctgtcttgctaggttggggaaattctcctggattatatcctgaagagtgttttcaagcttggttccattctccccatcactttcaggtacaccaatcaaacgtaggtttggtcttttcacatagtcccatatttcttggaggctttgttcattcattttcattcttttttctctaattttgtcttcacactttatttcattaagttgaatttcaatctctgatatcctttcttctgcttaatcaattcggctattgatacctttgtatgcttcacaaagttctcgtgc--tgtttttcagctccatcaggtcatttatgttcttctctaaactgattaatttagttaggaagtcttctatcttttcttcaaggttcttagcttccttgcattgggttaaaacatgctcctttagcttggaggagtttgttattacccaccttctgaagcctgcttgtgtcaattcgtcaaactcattccccatccagttttgttcccttgcttgtgaggagttgtgatcctttggaggagaagaggcgttctggattttggaattttcagcCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29672530 1209 + 173848474 gtagtatagtttaaagtcaggtagcatgatgcctccaactttctccttcttgcttaggattgtcttggttatacgggctctgttttggttccatgtgaaatttaaagt-ag-ttttttctaattctgtgaagaaagtcagtggtagcttgattgggatagcactgaatctataaattactttgggcagtatggccattttcatgatattgattctttggtatgtttttgcagtggctggtactgatttttcttttccatatttagtacttccttcaggaactcccgtaaggcaggactggtggtgacgaaatctctcagcatttgcttgtctgtaaaggattttgtttctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattcttttctttaagaattttgaatattcgttctcactctcccctcgcttgtagggtttttgctgagagacctgctgttagtctgatgggcttccctttgtgggtaatgcgacctttctctctggctgcccttaaca-tttttttctttcatttcaaccttggtgaatattatgattatgtgtcttggggttgctgttcttgaggaatatcttagtatttttctctgcatttcctgaatttgaatgttgacctgtcttgctaggttggggaaattctcctggattatatcctgaagagtgttttcaagcttggttccattctccccatcactttcaggtacaccaatcaaacgtaggtttggtcttttcacatagtcccatatttcttggaggctttgttcattcattttcattcttttttctctaattttgtcttcacactttatttcattaagttgaatttcaatctctgatatcctttcttctgcttaatcaattcggctattgatacctttgtatgcttcacaaagttctcgtgc--tgtttttcagctccatcaggtcatttatgttcttctctaaactgattaatttagttaggaagtcttctatcttttcttcaaggttcttagcttccttgcattgggttaaaacatgctcctttagcttggaggagtttgttattacccaccttctgaagcctacttgtgtcaattcgtcaaactcattccccatccagttttgttcccttgcttgtgaggagttgtgatcctttggaggagaagaggcgttctggattttggaattttcagcCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5463078 1210 +   6154872 gtagtatagtttaaagtgaggtagcatgatgcctccaactttctccttcttgcttaggattctcttggttatacgggctctgttttggttccatgtgaaatttaaagt-agtttttttctaattctgtgaagaaagtcagtggtagcttgattgggatagcactgaatctataaattactttgggcagtatggccattttcatgatattgattctttggtatgcttttgcagtggctggtactgatttttcttttccatatttagtacttccttcaggaactcccgtaaggcaggactggtggtgacgaaatctctcagcatttgcttgtctgtaaaggattttgtttctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattcttttctttaagaattttgaatattcattctcactctcccctcgcttgtagggtttttgctgagagacctgctgttagtctgatgggcttccctttgtgggtaatgcgacctttctctctggctgcccttaaca-tttttttctttcatttcaaccttggtgaatattatgattaagtgtcttggggttgctgttcttgaggaatatcttagtatttttctctgcatttcctgaatttgaatgttgacctgtcttgctaggttggggaaattctcctggattatatcctgaagagtgttttcaagcttggttccattctccccatcactttcaggtacaccaatcaaacgtaggtttggtcttttcacatagtcccatatttcttggaggctttgttcattcattttcattcttttttctctaattttgtcttcatgctttatttcattaagttgaatttcaatctctgatatcctttcttctgcttaatcaattcggctattgatacctttgtatgcttcacaaagttctcgtgc--tgtttttcagctccatcaggtcatttatgttcttctctaaactgattaatttagttaggaagtcctctatcttttcttcaaggttcttagcttccttgcattgggttaaaacatgctcctttagcttggaggagtttgttattacccaccttctgaagcctacttgtgtcaattcgtcaaactcattccccatccagttttgttcccttgctcgtgaggagttgtgatcctttggaggagaagaggtgttctggattttggaattttcagcCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29634813 1205 + 172585720 gtagtatagtttaaagtcaggtagcatgatg---ccaactttgtccttcttgtttaggattgtctcaggtgtacgggctctgttttggtttcatatgaaatttaaagcttttttttttctaattctgtgaagaaagtcaatggtagcttgattgggatagcattgaatctataaattattttgggtagtatggccattttcacaacattgattctttggtgtgtttttgcagtggctggtactggtttttcttttccatatttagtacttccttcaggaactcctgtaaggcaggaccgttggtgacaaaatctctcagcagttgcttgtctgtaaaggattttgtttctccttcacttatggagatttgtttggctggatatgaaattctggatttaaaattattttctttaagaattttgaatattcgttctcactctcccctcacttgtagggtttctgccgagaaatctgctgttagtctgatgggcttccctttgtgggtcacccaacctttctctctggctgcccttaaca--ctttttctttcatttcagtcttggtgaatgttatgattatgtgtcttggagttgcagttcttgaggagtatcttagtgtttttctctctatttcctgaatttgaatgttgacctgtcttgctaggttggggaaattctcctatgtaatatcctgaagagtgtttttaagcttggttccattctccctgtcactttcaggtacaccaatcaaatgtaggtttggtcttttcacatagtcccatatttcttggaggc----tttgttccttttcattcttttttctctaatcttgtcttcacgctttatttcattaagttgaatttcaatctctgatatcctttcttctgcttgatcaattcggctgttgatacttttgtatgcttcacgaagttctcatgttgtgtttttcagctccatcaggtcacttatgttcttctctaaactgattaatttagttaggaattcatctgtcttttcttcaagattcttagcttccttgcattgggttagaacatgctcctttagcttggagcagtttgttattacccaccttctgacgctgacttctgtcaattcatcaaactcattctccatccagttttgttcccttgctcatgagaagttgtgatcctttggaggagaagaggcgttctggattttggaattttcaacCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29297360 1205 - 170955103 gtagtatagtttaaagtcaggtagcatgatg---ccaactttgtccttcttgtttaggattgtctcaggtgtacgggctctgttttggtttcatatgaaatttaaagcttttttttttctaattctgtgaagaaagtcaatggtagcttgattgggatagcattgaatctataaattattttgggtagtatggccattttcacaacattgattctttggtgtgtttttgcagtggctggtactggtttttcttttccatatttagtacttccttcaggaactcctgtaaggcaggactgttggtgacaaaatctctcagcagttgcttgtctgtaaaggattttgtttctccttcacttatggagatttgtttggctggatatgaaattctggatttaaaattattttctttaagaattttgaatattcgttctcactcccccctcacttgtagggtttctgccgagaaatctgctgttagtctgatgggcttccctttgtgggtcacccaacctttctctctggctgcccttaaca--ctttttctttcatttcagtcttggtgaatgttatgattatgtgtcttggagttgcagttcttgaggagtatcttagtgtttttctctctatttcctgaatttgaatgttgacctgtcttgctaggttggggaaattctcctatgtaatatcctgaagagtgtttttaagcttggttccattctccctgtcactttcaggtacaccaatcaaatgtaggtttggtcttttcacatagtcccatatttcttggaggc----tttgttccttttcattcttttttctctaatcttgtcttcacgctttatttcattaagttgaatttcaatctctgatatcctttcttctgcttgatcaattcggctgttgatacttttgtatgcttcacgaagttctcatgttgtgtttttcagctccatcaggtcacttatgttcttctctaaactgattaatttagttaggaattcatctgtcttttcttcaagattcttagcttccttgcattgggttagaacatgctcctttagcttggagcagtttgttattacccaccttctgacgctgacttctgtcaattcatcaaactcattctccatccagttttgttcccttgctcatgagaagttgtgatcctttggaggagaagaggcgttctggattttggaattttcaacct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2305482 1204 -   2996164 gtagtatagtttaaagtcaggtagcatgatg---ccaactttgtccttcttgtttaggattgtctcaggtgtacgggctctgttttggtttcatatgaaatttaaagcttttttttttctaattctgtgaagaaagtcaatggtagcttgattgggatagcattgaatctataaattattttgggtagtatggccattttcacaacattgattctttggtgtgtttttgcagtggctggtactggtttttcttttccatatttagtacttccttcaggaactcctgtaaggcaggactgttggtgacaaaatctctcagcagttgcttgtctgtaaaggattttgtttctccttcacttatgaagatttgtttggctggatatgaaattctggatttaaaattattttctttaagaattttgaatattcattctcactctcccctcacttgtagggtttctgccgagaaatctgctgttagtctgatgggcttccctttgtaggtcacccaacctttctctctggctgcccttaaca--ctttttctttcatttcagtcttggtgaatgttatgattatgtgtcttggagttgcagttcttgaggagtatcttagtgtttttctctctatttcctgaatttgaatgttgacctgtcttgctaggttggggaaattctcctatgtaatatcctgaagagtgtttttaagcttggttccattctccttgtcactttcaggtacaccaatcaaatgtaggtttggtcttttcacatagtcccatatttcttggaggc----tttgttccttttcattcttttttctctaatcttgtcttcacactttatttcattaagttgaatttcaatctctgatatcctttcttctgcttgatcaatttggctattgatacttttgtatgcttcacgaagttctcatgttgtgtttttcagctccatcaggtca-ttatgttcttctctaaactgattaatttagttaggaattcgtctgtcttttcttcaagattcttagcttccttgcattgggttagaacatgctcctttagcttggagcagtttgttattacccaccttctgacgctgacttctgtcaattcatcaaactcattctccatccagttttgttcccttgctcgtgagaagttgtgatcctttggaggagaagaggcgttctggattttggaattttcaacCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       28997 1204 +    766320 gtagtatagtttaaagtcagatagcatgatg---ccaactttgtccttcttgtttaggattgtctcaggtgtacgggctctgttttggtttcatatgaaatttaaagc-tttttttttctaattctgtgaagaaagtcaatggtagcttgattgggatagcattgaatctataaattattttgggcagtatggccattttcacaacattgattctttggtgtgtttttgcagtggctggtactggtttttcttttccatatttagtacttccttcaggaactcctgtaaggcaggactgttggtgacaaaatctctcagcagttgcttgtctgtaaaggattttgtttctccttcacttatgaagctttgtttggctggatatgaaattctgggtttaaaattattttctttaagaattttgaatattcgttctcactctcccctcacttgtagggtttctgccgagaaatctgctgttagtctgatgggcttccctttgtgggtcacccaacctttctctctggctgcccttaaca--ctttttctttcatttcagtcttggtgaatgttatgattatgtgtcttggagttgcagttcttgaggagtatcttagtgtttttctctctatttcctgaatttgaatgttgacctgtctggctaggttggggaaattctcctatgtaatatcctgaagagtgtttttaagcttggttccattctccctatcactttcaggtacaccaatcaaatgtaggtttggtcttttcacatagtcccatatttcttggaggc----tttgttccttttcattcttttttctctaatcttgtcttcacgctttatttcattaagttgaatttcaatctctgatatcctttcttctgcttgatcaattcggctgttgatacttttgtatgcttcacgaagttctcatgttgtgtttttcagctccatcaggtcacttatgttcttctctaaactgattaatttagttaggaattcatctgtcttttcttcaagattcttagcttccttgcattgggttagaacatgctcctttagcttggaggagtttgttattacccaccttctgacgctgacttctgtcaattcatcaaactcattctccatccagttttgttcccttgctcatgagaagttgtgatcctttggaggagaagaggcgttctggattttggaattttcaacCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28582226 1208 -  71996105 gtagtatggtttaaagtcagatagcatgatg---ccaactttgtccttcttgtttaggattgtctcaggtgtacgggctctgttttggtttcatatgaaatttaaagc-tttttttttctaattctgtgaagaaagtcaatagtaccttgattgggatagcattgaatctataaattattttgagcagtatggccattttcacaacattgattctttggtgtgtttttgcagtggctggtactggtttttcttttccatatttagtacttccttcaggaactcctgtaacgcaggactgttggtgacaaaatctctcagcagttgcttgtctgtaaaggattttgtttctccttcacttatgaagctttgtttggctggatatgaaattctgggttgaaaattcttttctttaagaattttgaatattcgttctcactctcccctcacttgtagggtttctgccgataaatctgctgttactctgatgggcttccctttgtgggtcgcccaacttttctctctggttgcccttaaca--ctttttctttcatttcagccttggtgaatgttatgattatgtgtcttggggttgcagttcttgaggagtatcttagtatttttctctctatttcctgaatttgaatgttgacctgtcttgctaggttggggaaattctcctggataatatcctgaagagtgtttttaagcttggttccattctccccgtcactttcaggtacaccaatcaaatgtaggtttggtcttttcacatagtcccatatttcttggaggctttgtttgttccttttcattcttttttctctaatcttgtcttcacgctttatttcattaagttgaatttcaatctctgatatcctttcttctgcttgatcaattcggctactgatacttttgtatgcttcacgaagttctcatgctatgtttttcagctccatcaggtcacttatgttcttctctaaactgattaatttagttaggaattcttctatcttttcttcaagattcttagcttccttgcattgggttagaacatgctcctttagcttggaggagtttgttattacccaccttctgacgctgacttctgtcaattcatcaaactcattctccatccagttttgttcccttgctcatgagaagttgtgatcctttggaggagaagaggcattctggattttggaattttcaacct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1         494 1209 -    352859 gtagtatagtttaaagtcaggtagcatgatg---ccaactttgtccttcttgtttaggattgtctcaggtgtacgggctctgttttggtttcatatgaaatttaaagcttttttttttctaattctgtgaagaaagtcaatggtagcttgattgggatagcattgaatctataaattattttgggcagtatggccattttcacaacattgattctttggtgtgtttttgcagtggctggtactggtttttcttttccatatttagtacttccttcaggaactcctgtaaggcaggactgttggtgacaaaatctctcagcagttgcttgtctgtaaaggattttgtttctccttcacttatgaagctttgtttggctggatatgaaattctgggttgaaaattattttctttaagaattttgaatattcgttctcactctcccctcacttgtagggtttctgccgagaaatctgctgttagtctgatgggcttccctttgtgggtcacccaacctttctctctggctgcccttaaca--ctttttctttcatttcagccttggtgaatgttatgattatgtgtcttggagttgcagttcttgaggagtatcttagtgtttttctctctatttcctgaatttgaatgttgacctgtcttgctaggttggggaaattctcctatgtaatatcctgaagagtgtttttaagcttggttccattctccccgtcactttcaggtacaccaatcaaatgtaggtttggtcttttcacatagtcccatatttcttggaggctttgtttgttccttttcattcttttttctctaatcttgtcttcacgctttatttcattaagttgaatttcaatctctgatatcctttcttctgcttgatcaattcagctgttgatacttttgtatgcttcacgaagttctcatgttgtgtttttcagctccatcaggtcacttatgttcttctctaaactgattaatttagttaggaattcgtctatcttttcttcaagattcttagcttccttgctttgggttagaacatgctcctttagcttggaggagtttgttattacccaccttctgatgctgacttctgtcaattcatcaaactcattctccatccagttttgttcccttgctcatgagaagttgtgatcctttggaggagaagaggcgttctggattttggaattttcaacCT
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570037            304409 9342 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315  636 -   2232465 I
e calJac3.chr4             171592891 2696 - 171630274 I
e colAng1.NW_012115566v1     2157073 40175 -   3067355 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=51533.000000
s hg38.chr6_GL000254v2_alt    456867 11 +   4827813 gcaaaagggtt
s panTro5.chr6              29437938 11 + 175400573 GAaaaagggtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29673739 11 + 173848474 gcaaaagggtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5464288 11 +   6154872 gcaaaagggtt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29636018 11 + 172585720 gcaaaaggatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29298565 11 - 170955103 gcAAaaggatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2306686 11 -   2996164 gcaaaaggatt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       30201 11 +    766320 gcaaaaggatt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28583434 11 -  71996105 gcAAaaggatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        1703 11 -    352859 gcaaaaggatt
i manLeu1.NW_012099655v1   C 0 C 0
s calJac3.chr4             171595587 11 - 171630274 gcaaaaggatt
i calJac3.chr4             I 2696 C 0
e dasNov3.JH570037            304409 9342 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1719315 636 -   2232465 I
e colAng1.NW_012115566v1     2157073 40175 -   3067355 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=2940887.000000
s hg38.chr6_GL000254v2_alt    456878 605 +   4827813 tttatagatgtgattaaattctcaaccttgagttgggattattatcctgtattagccaggagggctgacataatcacacatatccatataagaga-----gagggcatgtaagttctttcctgccacattcttagtcagagagaagatattctgctgctgactttaaagatagaggaatgggccatgagccacggaatacaggttgcttctagaagctggagtagttgaggaaacatgttctgtcctagagcctgcggaagatgtgcagccctgtagatccaatttagtctttctttctccagatatataagatatttttgttattttaaacaccaaatttgtagtaatttgttttagcaacaatgggaaactaataGAGTTGGCATTCTATATGAAGGAATAGCTTTCCTTTGTTCC--------------tg--tgtgtg--tgtgt----gtgtacgtgtgtgtATCAGGTAttatttatctatgtgtctatccatatatcttaatatggtcttatgcattcttatttcattctatcattattttgatgctgaaatggtcagtgttttggctagagaggatcccttctgggtggcttatatgtcttttttatatgtctccatacttctt
s panTro5.chr6              29437949 611 + 175400573 tttatagatgtgattaaattctcaaacttgagttgggattattatcctgtattagccaggagggctgacataatcacacatatccatataagaga-----gagggcatgtaagttctttcctgccacattcttagtcagagagaagatattctgctgctgactttaaagatagaggaatgggccatgagccatggaatacaggttgcttctagaagctggagtagttgaggaaacatgttctgtcctagagcctgcagaagatgtgcagccctgtagatccaatttagtctttctttctccagatatataagatatttttgttattttaaacaccaaatttgtagtaatttgttttagcaacaatgtaaaactaataGAGTTGGCATTCCATATGAAGGAATAGCTTTCCTTTGTTCC--------tgtgtgtg--tgtgtg--tgtgt----gtgtacgtgtgtgtATCAGGTAttatttatctatgtgtctatccatatatcttaatatggtcttatgcattcttatttcattctatcattattttgatgctgaaatgctcagtgttttggctagagaggatcccttctgggtggcttatatatcttttttatatgtctccatacttctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29673750 613 + 173848474 tttatagatgtgattaaattctcaaacttgagttgggattattatcctgtattagccaggagggctgacataatcacacatatccatataagaga-----gagggcatgtaagttctttcctgccacattcttagtcagagagaagatattctgctgctgactttaaagatagaggaatgggccatgagccatggaatacaggttgcttctagaagctggagtagttgaggaaacatgttctgtcctagagcctgcagaagatgtgcagccctgtagatccaatttagtctttctttctccagatatataagatatttttgttattttaaacaccaaatttgtagtaatttgttttagcaacaatgtaaaactaataGagttggcattccatatgaaggaatagctttcctttgttcc------tgtgtgtgtg--tgtgtg--tgtgt----gtgtacgtgtgtgtatcaggtattatttatctatgtgtctatccatatatcttaatatggtcttatgcattcttatttcattctatcattattttgatgctgaaatgctcagtgttttggctagagaggatcccttctgggtggcttatatatcttttttatatgtctccatacttctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5464299 619 +   6154872 tttatagatgtgattaaattctcaaccttgagttgggattattatcctgtattagccaggagggctgacataatcacacatatccatataagaga-----gagggcatgtaagttctttcctgccacattcttagtcagagagaagatattctgctgctgactttaaagatagaggaatgggccatgagccacggaatacaggttgcttctagaagctggagtagttgaggaaacatgttctgtcctagagcctgcagaagatgtgcagccctgtagatccaatttagtctttctttctccagatatataagatatttttgttattttaaacaccaaatttgtagtaatttgttttagcaacaatgaaaaactaataGagttggcattctatatgaaggaatagctttcctttgttcctgtgtgtgtgtgtgtg--tgtgtg--tgtgt----gtgtacgtgtgtgtatcaggtattatttatctatgtgtctatccgtatatcttaatatggtcttatgcattcttatttcattctatcattattttgatgctgaaatggtcagtgttttggctagagaggatcccttctgggtggcttatatatcttttttatatgtctccatacttctt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29636029 609 + 172585720 tttatagatgtgattaaattctcaaccttgagttgggattattatcctgtattagccaggtgggctgacataatcacacatgtccatataagaaa-----gaggtcatgtaagttctttactgccatgttcttagtcagagagaagatattctgctactgactttaaagatagaggaatgggccatgagccatggaatgtaagttgctactagaagctggagtagttgaggaaacatattctctcctagagcctgcagaagatgtgcaggcctgtagatccaatttagtctttctatctccagatatataagatatttttgttattttaaacaccaaatttgtaataatttgttttagcaacaatggaaaactaataGAGTTGACATTCGATATGAAGGAATAGCTTTCCtctgttcg----------tgtgtc--tgtgtg--tgtgt----gtgtgtgcgcgtgtATCAGGTAttatttatctatgtgtctatctatatatcctaatatggtcttatgcattcttatttcattctgtcatgattttgatgctgaaatgatcagtgttttggctagagaggacccctttcagttggcttatatatcttttttatatatctccatacttctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29298576 609 - 170955103 tttatagatgtgattaaattctcaaccttgagttgggattattatcctgtattagccaggtgggctgacataatcacacatgtccatataagaaa-----gaggtcatGTAAGTTCTTTACTGCCATGTTCTTAGTCAgagagaagatattctgctactgactttaaagatagaggaatgggccatgagccatggaatgtaagttgctactagaagctggagtagttgaggaaacatattctctcctagagcctgcagaagatgtgcaggcctgtagatccaatttagtctttctatctccagatatataagatatttttgttattttaaacaccaaatttgtaataatttgttttagcaacaatggaaaactaatagagtTGACATTCGATATGAAGGAATAGCTTTCCTCTGTTcg----------tgtgtc--tgtgtg--tgtgt----gtgtgtgcgcgtgtatcaGGTATTATTTatctatgtgtctatctatatatcctaatatggtcttatgcattcttatttcattctgtcatgattttgatgctgaaatgatcagtgttttggctagagaggacccctttcagttggcttatatatcttttttatatatctccatacttctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2306697 610 -   2996164 tttatagatgtgattaaattctcaaccttgagttgggattattatcctgtattagccaggtgggctgacataatcacacatgtccatataagaaa-----gaggtcatgtaagttctttactgccatgttcttagtcagagagaagatattctgctactgactttaaagatagaggaatgggccatgagccatggaatataagttgctactagaagctggagtagttgaggaaacatattctctcctagagcctgcagaagatgtgcaggcctgtagatccaatttagtctttctatctccagatatataagatatttttgttattttaaacaccaaatttgtaataatttgttttagcaacaatggaaaactaa-AGagttgacattcgatatgaaggaatagctttcctctgttcg----------tgtgtctgtgtgtg--tgtgt----gtgtgtgtgcgtgtatcaggtattatttatctatgtgtctatctatatatcctaatatggtcttatgcattcttatttcattctgtcatgattttgatgctgaaatgatcagtgttttggctagagaggacccctttcagttggcttatatatcttttttatatatctccatacttctt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       30212 613 +    766320 tttatagatgtgattaaattctcaaccttgagttgggattattatcctgtattagccaggtgggctgacataatcacacgtgtccatataagaaa-----gaggtcatgtaagttctttactgccatgttcttagtcagagagaagatattctgctactgactttaaagatagaggaatgggccatgagccatggaatataggttgctactagaagctggagtagttgaggaaacatattctctcctagagcctgcagaagatgtgcaggactgtagatccaatttagtctttctatctccagatatataagatatttttgttattttaaacaccaaatttgtaataatttgttttagcaacaatggaaaactaataGAGTTGACATTCGATATGAAGGAATAGCTTTCCTCTGTTCg----------tgtgtg--tgtgtg--tgtgtgcacgcgcgtgtgcgtgtATCAGGTAttatttatctatgtgtctatctatatatcctaatatggtcttatgcattcttatttcattctgtcatgattttgatgctgaaatgatcagtgttttggctagagaggacccctttcagttggcttatatatcttttttatatatctccatacttctt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28583445 607 -  71996105 tttatagatgtgattaaattctcaaccttgagttgggattattatcctgtattagccaggtaggctgacataatcacacgtatccatgtaagaaa-----gagggcatGTAAGTTCTTTACTGCCACGTTCTTAGTCAgagagaagatattctgctactgactttaaagatagaggaatgggccgtgagccatggaatacaggttgctactagaagctggagtagttgaggaaacatattctctcctagagcctgcagaacatgtgcaggcctgtagatccaatttagtctttctgtctccagatatataagatatttttgttattttaaacaccaaatttgtaataatttgttttagcaacaatggaaaactaatagagcTGACATTCGATATGAAGGAATAGCTTTCCTTTGTTCG----------TGTgtg--tgtg----tgtgt----gtgtgcatgagtgtatcaGGTATTATTTatctatgtgtctatctatatatcctaatatggtcttatgcattcttatttcattctgtcatgattttgatgctgaaatgatcagtgttttggctagagaggacccctttcagttggcttatatatcttttttatatatctccatatttctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        1714 610 -    352859 tttatagatgtgattaaattctcaa-cttgagtcgggattattatcctgtattagccaggtgggctgacataatcacacgtgtccatataagaaa-----gagggcatgtaagttctttactgccatgttcttagtcagagagaagatattctgctactgactttaaagatagaggaatgggccatgagccatggaatataggttgctactagaagctggagtagttgaggaaacatattctctcctagagcctgcagaagatgtgcaggcctgtagatccaatttagtctttctatctccagatatataagatatttttgttatttttaacaccaaatttgtaataatttgttttagcaacaatggaaaactaataGAGTTGACATTCGATATGAAGGAATAGCTTTCCTTTGTTCg----------tgtgtg--tgtgtgtatgtgt----gtgcgcgcgcgtgtATCAGGTAttatttatctatgtgtctatctatatatcctaatatggtcttatgcattcttacttcattctgtcatgattttgatgctgaaatgattagtgttttggctagagaggacccctttcagttggcttatatatcttttttatatatctccatacttctt
i manLeu1.NW_012099655v1   C 0 C 0
s calJac3.chr4             171595598 563 - 171630274 tttatagatgtgattaaattcataaccttgagttgggtttattatcctggattag-caggtgggctgacataatca-atgcatccatttaagagt-----ga-------------------tgccgga-----gggcagagagaagatgttctgctgctgactttaaagatagagggataggccatgagccaaggaatacagcttgct-ttgaaagtgggagtagttgaggaaacagaatctctcctaaagccggtagaag------agccctgtagacccaatttagtcctcctctctccagacttataaaata----tgttattttaaacaccaaagttgtagtaatttgttctagcaacaatggaaaacaaataGagttggcattctatgtgaaggaatagctttcctttattcc------------------tatgtg--tgtgt----gtgtacaagtgcatatcagatattatttatctttgtatttatctgtatatcctaatatggtcttatgcattcttatttcattctgtcattattttgat-ctgaaactgtcactttcttggctagagaagaccccttccagttg--tttcatgttttttttatatgtctccatacttctt
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1719951 565 -   2232465 tttacagatatgattatattaaggatattgtgatggggacattatactactttagccaggtaggacagtataatcacaggagtacttgtgagggaaacaggaggtcaggaaa-------------------------aaagacaagacactctgctactgactttaaagatggaggaagaggccgtgagccaaggaatataggttgcttctagaagctg----aggtgaagaaatagattctctcctaaaacctgcagaaggaatacagtcttgtagatcaaattta-tcttctcatctctaaaggtgtaatata--ataaatttTATAAACACAA-----------------TATAGCAGCAATGGGAAATTCA----GTTGCCATTCTGCAGGAAGGAATAGCTTTCTTTTTTTAA------TTTCCATAAC--TGTGTG--CACAT----GGTTTTATTCACATATCATCTATTAcctatccatccatttagctatctactttaatatgaacttatgagtttctaccttattctatcatacttttgattctgaaactctcactattttggccagtgaggatcccttcctgtcagctaatatatccttttgacatgtgccagtatttctt
i otoGar3.GL873742         I 636 C 0
e dasNov3.JH570037            304409 9342 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e colAng1.NW_012115566v1     2157073 40175 -   3067355 T
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=868490.000000
s hg38.chr6_GL000254v2_alt    457483 143 +   4827813 aaaatattttcttac-tgttggcaaactcagatgaacttgacatatctgacacttttcttTGGGAGGAACAGATAACTTTGTTTATCTTAGGTCAAAT-GACAAAAACTTTGAATAAAGCAATGGGGTTTCCTAATGAACAATTC
s panTro5.chr6              29438560 143 + 175400573 aaaatattttcttac-tgttggcaaactcagatgaacttgacatatctgacacttttcttTGGGAGGAACAGATAACTTTGTTTATCTTAGGTCAAAT-GACAAAAACTTTGAATAAAGTAGTGGGGTTTCCTAATGAACAGTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29674363 143 + 173848474 aaaatattttcttac-tgttggcaaactcagatgaacttgacatatctgacacttttcttTGGGAGGAACAGATAACTTTGTTTATCTTAGGTCAAAT-GACAAAAACTTTGAATAAAGTAGTGGGGTTTCCTAATGAACAATTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5464918 142 +   6154872 -aaatattttcttac-tgttggcaaactcagatgaacttgacatatctgacacttttcttTGGGAGGAACAGATAACTTTGTTTATCTTAGGTCAAAT-GACAAAAACTTTGAATAAAATAGTGGGGTTTCCTAATGAACAATTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29636638 143 + 172585720 aaaatattttcttac-tgttggcaaactgagatgatcttgacatatctgacacttATCTTTGGGAGGAGTAGATAACTTTGTTTATCTTAGGTCAAAT-GACCAAAACTTTGAATAAAGTAGTGGGGTTTCCTAATGAACAATTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29299185 143 - 170955103 aaaatattttcttac-tgttggcaaactgagatgatcttgacatatctgacacttatctTTGGGAGGAGTAGATAACTTTGTTTATCTTAGGTCAAAT-GACCAAAACTTTGAATAAAGTAGTGGGGTTTCCTAATGAACAATTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2307307 143 -   2996164 aaaatattttcttac-tgttggcaaactgagatgatcttgacatatctgacacttATCTTTGGGAGGAGTAGATAACTTTGTTTATCTTAGGTCAAAT-GACCAAAACTTTGAATAAAGTAGTGGGGTTTCCTAATGAACAATTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       30825 143 +    766320 aaaatattttcttac-tgttggcaaactgagatgatcttgacatatctgacacttATCTTTGGGAGGAGTAGATAACTTTGTTTATCTTAGGTCAAAT-GACCAAAACTTTGAATAAAGTAGTGGGGTTTCCTAATGAACAATTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28584052 143 -  71996105 aaaatattttcttac-tgttggcaaactgagatgatcttgacataactgacacttttctttgggAGGAGTAGATAACTTTGTTTATCTTAGGTCAAAT-GACCAAAACTTTGAATAAAGTAGTGGGGTTTCCTAATGAACAATTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        2324 143 -    352859 aaaatattttcttac-tgttggcaaactgagatgatcttgacatatctgacacttATCTTTGGGAGGAGTAGATAACTTTGTTTATCTTAGGTCAAAT-GACCAAAACTTTGAATAAAGTAGTGGGGTTTCCTAATGAACAATTC
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2116898 143 -   3067355 AAAAAATTTTCTTAC-CGTTGGCAAACTGAGGTGATCTTAACATATCTGACACTTTTCTTTGGGAGGAGTAGATAACTTTGTTTATCTTAGGTCAAAT-GACCAAAACTTTGAATAAAGTAGTGGGGTTTCCTAATGAGAAATTC
i colAng1.NW_012115566v1   T 40175 I 40764
s calJac3.chr4             171596161 143 - 171630274 agaatattttcttac-ttttggcaAACTCAGACAATTGTGACATGTCTGACACCTTTCTTTGGGAGGAATAGATAACTTCGTTTATCTTAGGTCAAATAAACAAAAATTTTGAATAAAGTA-TGGGGTTTCCTAATGAAGAATTC
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1720516 144 -   2232465 agaacatttccttaagttctggcaaactcagatggtcttgactcatctgacacttttcttTGTGCGAGAAGGCCTAATACGTCTTTTTCAGGTCCCAT-GGGCACCCCTTTGAATAAATCACTGGGATTTCCTAATGATCAGTTT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            304409 9342 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1432036.000000
s hg38.chr6_GL000254v2_alt    457626 232 +   4827813 ACTAGAAATGCATGGAGTAGATAACACCAAGAGATGGTAATATTGTTGGCAAATATTTCTTTTGTTATAACACCACATTTCTTTACCCTCTCAGGAAATGGAAAGTTTTTGTATTGTGCTTGAGAGTGGGGCAATGGTGAAGAACAGTGACTGGCTATGGGTTTGGGGAGTCATT--TGGCAGGAGTGTAAATCCTTGAAATTTGAAGATCTTTCAAATTACCTTGATTCtcct
s panTro5.chr6              29438703 232 + 175400573 ACTAGAAATGCATGGAGTAGATAACACCAAGAGATGGTAATATTGTTGGCAAATATTTATTTTGTTATAACACCACATTTCTTTACCCTCTCAGGAAATGGAAAGTTTTTGTATTGTGCTTGAGAGTGGGGCAATGGTGAAGAACAGTGACTGGCTATGGGTTTGGGGAGTCATT--TGGCAGGAGTGTAAATCCTTGAAATTTGAAGATCTTTCAAATTACCTTGATTCtcct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29674506 232 + 173848474 ACTAGAAATGCATGGAGTAGATAACACCAAGAGATGGTAATATTGTTGGCAAATATTTATTTTGTTATAACACCACATTTCTTTACCCTCTCAGGAAATGGAAAGTTTTTGTATTGTGCTTGAGAGTGGGGCAATGGTGAAGAACAGTGACTGGCTATGGGTTTGGGGAGTCATT--TGGCAGGAGTGTAAATCCTTGAAATTTGAAGATCTTTCAAATTACCTTGATTCtcct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5465060 232 +   6154872 ACTAGAAATGCATGGAGTAGATAACACCAAGAGATGGTAATATTGTTGGCAAATATTTATTTTGTTATAACACCACATTTCTTTACCCTCTCAGGAAATGGAAAGTTTTTGTATTGTGCTTGAGAGTGGGGCAATGGTGAAGAACAGTGACTGGCTATGGGTTTGGGGAGTCATT--TGGCAGGAGTGTAAATCCTTGAAATTTGAAGATCTTTCAAATTACCTTGATTCtcct
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29636781 231 + 172585720 ACTGGAAATGCATGGAATAGACAACACCAAGAGATGGTAATATTGTTGACAAATATTTATTGAGTTATAACACCACATTTCTTTACCCTCTCAGGAAATGGAAAGTTGTTGTATTGTGTTTGAGAGTG-GGCAATGCTGAAGAACAGTGACTGGCTATGGGTTTGGGGAGTCATT--TGGCAGGAATGTAAGTCCTTGAAATTTGAAGATCTTTCAAATTGCCTTGTTTCtcct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29299328 231 - 170955103 ACTGGAAATGCATGGAATAGACAACACCAAGAGATGGTAATATTGTTGACAAATATTTATTGAGTTATAACACCACATTTCTTTACCCTCTCAGGAAATGGAAAGTTGTTGTATTGTGTTTGAGAGTG-GGCAATGCTGAAGAACAGTGACTGGCTATGGGTTTGGGGAGTCATT--TGGCAGGAATGTAAGTCCTTGAAATTTGAAGATCTTTCAAATTGCCTTGTTTCTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2307450 231 -   2996164 ACTGGAAATGCATGGAATAGACAACACCAAGAGATGGTAATATTGTTGACAAATATTTATTGAGTTATAACACCACATTTCTTTACCCTCTCAGGAAATGGAAAGTTGTTGTATTGTGTTTGAGAGTG-GGCAATGCTGAAGAACAGTGACTGGCTATGGGTTTGGGGAGTCATT--TGGCAGGAATGTAAATCCTTGAAATTTGAAGATCTTTCAAATTGCCTTGTTTCtcct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       30968 231 +    766320 ACTGGAAATGCATGGAATAGACAACACCAAGAGATGGTAATATTGTTGACAAATATTTATTGAGTTATAACACCACATTTCTTTACCCTCTCAGGAAATGGAAAGTTGTTGTATTGTGTTTGAGAGTG-GGCAATGCTGAAGAACAGTGACTGGCTGTGGGTTTGGGGAGTCATT--TGGCAGGAATGTAAATCCTTGAAATTTGAAGATCTTTCAAATTACCTTGTTTCtcct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28584195 232 -  71996105 ACTGGAAATGCATGGAGTAGACAACACCAAGAGATGGTAATATTGTTGACAAATATTTATTTAGTTATAACACCACATTTCTTTACCCTCTCAGGAAATGGAAAGTTGTTGTATTGTGTTTGAGAGTGCGGCAATGCTGAAGAACAGTGACTGGCTATGGGTTTGGGGAGTCATT--TGGCAGGAGTGTAAATCCTTGAAGTTTGAAGATCTTTCAAATTACCTTGTTTCTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        2467 231 -    352859 ACTGGAAATGCATGGAATAGACAACACCAAGAGATGGTAATATTGTTGACAAATATTTATTGAGTTATAACACCACATTTCTTTACCCTCTCAGGAAATGGAAAGTTGTTGTATTGTGTTTGAGAGTG-GGCAATGCTGAAGAACAGTGACTGGCTATGGGTTTGGGGAGTCATT--TGGCAGGAATGTAAATCCTTGAAATTTGAAGATCTTTCAAATTACCTTGTTTCtcct
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2157805 230 -   3067355 ACTGGAAATGCATGGAGTAGACGACACCAAGAGATGGTAATATTGTTGACAAATATTTATTTAGTTATAACACCACATTTCTTTACCCTCTCAGGAAATGGAAAGTTGTTGTATTGTGTTTGAGAGTG-GGCAATGCTGAAGAACAGTGACTGGCTATGAATTTGAGGAGTCA-T--TGGCAGGAATGTAAATCCTTGAAATTTGAAGATCTTTCAAATTACCTTGTTTCTCCT
i colAng1.NW_012115566v1   I 40764 C 0
s calJac3.chr4             171596304 232 - 171630274 ACTAAAAATGCATGGAGTAGACAACACCAAGAGATGGTAATATTGTTGGCAAATATTTATCTAGTTATAACATCACATTTCTTTACCATCTCAGGAAATGGAAAGTTTTCAGATCGTGCTTGAGAGTGGAGAAATGCTGAAGAACAGCGACTGCCTATGGGTTTGGGGAGCAATT--GGGCAGGACTCTAAATTCTTGGAATGTGAAGATCATTCAAATTACCTTGATTCTTCT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1720660 228 -   2232465 ACTAGAAATGCATGGAGTAGACTATACCAA-ATAAAGTAGCATT-TTGAAAAATATTTA----GTTAGAAGATTATGTTCCTTTACACTTCCAGCAAATGGAAAGTTTTTGTATTGTGCCAGAGAGTGGGGTCATACTGAAGAAAAGTAAAGGCTTATGATTTTGGGGAGCCATTTCTGGTTGGCTTGTAAATCTTTGAAATTTAAAGACTTTTCAAGTTACCTGGATTCTTCT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            304409 9342 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=8837181.000000
s hg38.chr6_GL000254v2_alt    457858 1646 +   4827813 caacaaaatactagcaaaccaaatccaacagcatataaaaacccaatTTCTTAGCTTTTTGATGAAATAGctgtttcctcacgttttctatcttctagaggtgacctatattccttggctcatggcccattcttctatctttaaagtcagcagcagagtatcttttctctgacctccagcctccctcttatatggacacaggtgattatattagcctacctgcctaatccaggataatatccccatctcaagattctgaatttaatcacatctataaaagtccttttgccatgtaaagtaacatataatcacaggctccacagattagggtgtgagcatttGCATCGCAGAGAAAAAGCCTACCATGACCCCTTGCGTCCCAGGGATAAAGCctaccatgatcaagtaggctttatccctgagaggaaaggttggttcaacatatgcaaatcaatacatgtgattcatcacataaacagaaatgaaaacaaaaaccacataattatctcaatacatgcagagaaggctttcaataaaattcaacatcccttcatgttaaaaaccctcaataaactaggcattgaaggaatatacttcaaaataataaaagcaatctataaaaaa---------cccacagccaacatcatactgaatgga-aaaagctggaagcattccccttgaaaaccggcataagacatggatgccctctctcaccacacctattcaacatagtactggaagtcctggccagagcaatcaggcaagagaaagaaatgaaaggcatccaagtaagaagagaggaagttatactattcctggttgcaaaagacatgaatccgtatg-agaaaaccccatagtcttggtccaaaagctccttgatctgataaacaacttcagaaaagtt----tcaggatacaaaagcaatgtacaaaaatttagcattcccatacatcaacaacattcaatctgagggctaaatcaggaatgccatcccattcacaactgccacaagaagaataaaatacctagaaattctgctaaccaagaacgtaaaacatctctacaatgagaattacaaaaaactgctgaaagaaatcagaggtgccacaaacaaatggaaaaacatcccatgctcatggatactaagattcagtatcattaaaatggccacactggtccaaagcaatttatagattcagtgcaattcctatcaaactaccgatgacattgttcacagcattagaaaa-aaactattttaaaatttgtatggaaccgaaaaagagccctaatagccaaggcaatcctaagaaaaaaggaaaaagctagaggcatcaccttacccaacttatactagagggctacagtatccaaaacagcacggtactgga--------aaaaaaaa-aaaaa-aaaacagatatatagaccaatagaata-aatagagaacccagaaatagtgcaacacacctacaaaaaaatatgatcttcaacaaagctgaccaaaacaagcaatggggaaaggactccccattttataaagggtgctgggataagtgactagctctatgcagaagattgaaactggatgccaactttgcaccacatacaaaaatcaactcaagatggattaaacacttaaatgttaaaatgaaaactattaatat
s panTro5.chr6              29438935 1649 + 175400573 caacaaaatactagcaaaccaaatccaacagcatataaaaaCCCAATTTCTTAGCTTTTTGATGAAATAGctgtttcctcaccttttctgtcttctagaggtgacctatattccttggctcatggcccattcttctatctttaaagtcagcagcagagtatcttttctctgacctccagcctccctcttatatggacacaggtgattatattagcctacctgcctaatccaggataatatccccatctcaagattctgaatttaatcacatctataaaagtccttttgccatgtaaagtaacatataatcacaggctccacagattagggtgtgagcatttGCATCGCAGAGAAAAAGCCTACCATGACCCCTTGCGTCCCAGGGATaaagcctaccatgatcaagtaggctttatccctgagaggaaaggttggttcaacatatgcaaatcaatacatgtgattcatcacataaacagaaatgaaaacaaaaaccacataattatctcagtacatgcagagaaggctttcaataaaattcaacatcccttcatgttaaaaaccctcaataaactaggcattgaaggaatatacttcaaaataataaaagcaatctataaaaaa---------cccacagccaacatcatactgaatgggcaaaagctggaagcattccccttgaaaaccggcataagacatggatgccctctctcaccacacctattcaacatagtactggaagtcctggccagagcaatcaggcaagagaaagaaatgaaaggcatccaaataagaagggaggaagttatactattcctggttgcaaaagacatgaatccgtatg-agaaaaccccatagtcttggtccaaaagctccttgatctgataaacaacttcagaaaagtt----tcaggataaaaaagcaatgtacaaaaatttagcattcccatacatcaacaacattcaatctgagggctaaatcaggaatgcaatcccattcacaactgccacaagaagaataaaatacctagaaattctgctaaccaagaacgtaaaacatctctacaatgagaattacaaaaaactgctgaaagaaatcagaggtgccacaaacaaatggaaaaacatcccatgctcatggatactaagattcagtatcattaaaatggccacactggtccaaagcaatttatagattcagtgcaattcctatcaaactactgatgacattgttcacagcattagaaaa-aaactattttaaaatttgtgtggaaccgaaaaagagccctaatagccaaggcaatcctaagaaaaaaggacaaagctagaggcatcaccttacccaacttatactagagggctacagtatccaaaacagcacggtactgga--------aaaaaaaacaaaac-aaaacagatatatagaccaatagaatagaatagagaacccagaaatagtgccacacacctacaaaaaaatatgatcttcaacaaagctgaccaaaacaagcaatggggaaaggactccccattttataaagggtgctgggataagtgactagctctatgcagaagattgaaactggatgccaactttgcaccacatacaaaaatcaactcaagatggattaaacacttaaatgttaaaatgaaaactattaatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29674738 1649 + 173848474 caacaaaatactagcaaaccaaatccaacagcatataaaaaCCCAATTTCTTAGCTTTTTGATGAAATAGctgtttcctcaccttttctatcttctagaggtgacctatattccttggctcatggcccattcttctatctttaaagtcagcagcagagtatcttttctctgacctccagcctccctcttatatggacacaggtgattatattagcctacctgcctaatccaggataatatccccatctcaagattctgaatttaatcacatctataaaagtccttttgccatgtaaagtaacatataatcacaggctccacagattagggtgtgagcatttGCATCGCAGAGAAAAAGCCTACCATGACCCCTTGCGTCCCAGGGATaaagcctaccatgatcaagtaggctttatccctgagaggaaaggttggttcaacatatgcaaatcaatacatgtgattcatcacataaacagaaatgaaaacaaaaaccacataattatctcagtacatgcagagaaggctttcaataaaattcaacatcccttcatgttaaaaaccctcaataaactaggcattgaaggaatatacttcaaaataataaaagcaatctataaaaaa---------cccacagccaacatcatactgaatgggcaaaagctggaagcattccccttgaaaaccggcataagacatggatgccctctctcaccacacctattcaacatagtactggaagtcctggccagagcaatcaggcaagagaaagaaatgaaaggcatccaaataagaagagaggaagttatactattcctggttgcaaaagacctgaatccgtatg-agaaaaccccatagtcttggtccaaaagctccttgatctgataaacaacttcagaaaagtt----tcaggatacaaaagcaatgtacaaaaatttagcattcccatacatcaacaacattcaatctgagggctaaatcaggaatgcaatcccattcacaactgccacaagaagaataaaatacctagaaattctgctaaccaagaacgtaaaacatctctacaatgagaattacaaaaaactgctgaaagaaatcagaggtgccacaaacaaatggaaaaacatcccatgctcatggatactaagattcagtatcattaaaatggccacactggtccaaagcaatttatagattcagtgcagttcctatcaaactactgatgacattgttcacagcattagaaaa-aaactattttaaaatttgtgtggaaccgaaaaagagccctaatagccaaggcaatcctaagaaaaaaggacaaagctagaggcatcaccttacccaacttatactagagggctacagtatccaaaacagcacggtactgga--------aaaaaaaacaaaac-aaaacagatatatagaccaatagaatagaatagagaacccagaaatagtgccacacacctacaaaaaaatatgatcttcaacaaagctgaccaaaacaagcaatggggaaaggactccccattttataaagggtgctgggataagtgactagctctatgcagaagattgaaactggatgccaactttgcaccacatacaaaaatcaactcaagatggattaaacacttaaatgttaaaatgaaaactattaatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5465292 1653 +   6154872 caacaaaatactagcaaaccaaatccaacagcatataaaaacccaatTTCTTAGC-TTTTGATGAAATAGctgtttcctcaccttttctatcttctagaggtgacctatattccttggctcatggcccattcttctatctttaaagtcagcagcagagtatcttttctccgacctccagcctccctcttatatggacacaggtgattatattatcctacctgcctaatccaggataatatccccatctcaagattctgaatttaatcacatctataaaagtccttttgccatgtaaagtaacatatattcacaggctccacagattagggtgtgagcatttGCATCACAGAGAAAAAGCCTACCATGACCCCTTGCGTCCCAGGGATaaagcctaccatgatcaagtaggctttatccctgataggaaaggttggttcaacatatgcaaatcaata-atgtgattcatcacataaacagaaatgaaaacaaaaaccacataattatctcaatacatgcagagaaggctttcaataaaattcaacatcccttcatgttaaaaaccctcaataaactaggcattgaaggaatatacttcaaaataataaaagcaatctataaaaaa---------cccacagccaacatcatactgaatgga-aaaagctggaagcatt-cccttgaaaaccggcataagacatggatgccctctctcaccacacctattcaacatagtactggaagtcctggccagagcaatcaggcaagagaaagaaatgaaaggcatccaaataagaagagaggaagttatactattcctggttgcaaaagacatgaatccgtatg-agaaaaccccatagtcttgatccaaaagctccttgatctgataaacaacttcagaaaagtttcagtcaggatacaaaagcaatgtacaaaaatttagcattcccatacatcaacaacattcaatctgagggctaaatcaggaatgcagtcccattcacaactgccacaagaagaataaaatacctagaaattctgctaaccaagaacgtaaaacatctctacaatgagaattacaaaaaactgctgaaagaaatcagaggtgccacaaacaaatggaaaaacatcccatgctcatggatactaagattcagtatcattaaaatggccacactggtccaaagcaatttatagattcagtgcaattcctatcaaactaccgatgacattgttcacagcattagaaaa-aaactattttaaaatttgtatggaaccgaaaaagagccctaatagccaaggcaatcttaag-aaaaaggacaaagctagaggcatcaccttacccaacttatactagagggctacagtatccaaaacagcacggtactggaaaaaaac-aaaaaaaaaaaaac-aaaacagatatatagaccaatagaatagaatagagaacccagaaatagtgccacacacctacaaaaaa--aagatcttcaacaaagctgaccaaaacaagcaatggggaaaggactccccattttataaagggtgctgggataagtgactagctctatgcagaagattgaaactggatgccaactttgcaccacatacaaaaatcaactcaagatggattaaacacttaaatgttaaaatgaaaactattaatat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29637012 1623 + 172585720 caacaaaatactagcaaaccaaatccaacagcatataaaaaCCCAATTTCTTAGCTTTTTGATGAAATAGctgtttcctcaccttttctatcttctagaggtaacctacattccttggcttatggcccattcttctatctttaaagtcagcagcagagtatcttttctctgacctccagcctccctcttatatggacacaggtgattattttagcccacctgcctaatccaagataatatccccatctcaagattctgagtttaatcacatctat-gaagtccttttgccatgtaaagtaatgtatagtcacaggttccagagattagggtgtgatcatttGCATCCCAGGGAAAAAGCCTACCACGACC---------------------CCTGccatgatcgagtaggctttatccctgagacaaaagattggttcaacatatgcaaatcaataaatatgattcatcacataaacataaatgaaaacaaaaactgcat-gttatctcaatacatggagaaaaggctttcaataatattcaacatgccttcatgttaaaagccctcaataaactaggcattgaaagaacatacttcaaaataataagagcgatctataaaaaa---------cccacagccaacatcatactgaatgggcaaaagctggaagcattccccttgaaaactggcacaagacattgatgccctctctcaccactcctattcagcatagtattggaagtactggccagatcaatcaggcaagagacagaaatgaaaggcatccaaataggacaagacaaagttaaattattcctggttgcaaaagacatgaatctgtatg-agaaaaccccatagtcttggcccaaaagctccttgatctgataaacaacttcagaaaagtt----tcaggatataaaagcaatgtacaaaaatttagcattcccatacatcaacagcatccaagctgagggttaaatcaggaatgcaatcccattcaccactgccatgaaaagaataaaatacctagaaatactgctaacctgaaaggtaaaaagtctctacaatgagaattacaaaagactgctaaaagaaatcagaggtgacacaaacaaatggaaaaacttcc--tgctgatgggtactaagac------tcattaaaatggccacaat-gtccaaagcaatttatagattcaatgcaattcatatcaaactagcaatgacattgttcacagaattagaaaa-aaactattttaaaatttgcatggaaccgaaaaagaggcctaatagccaagg-aatcctaagaaaaaagaacaaagctagaggcatcaccttacccaacttatactacagggctacagtaatcaaaacagcatggtactagtaaaaaacaaaacaaaacaaaacaaaaacagatatatagaccaatggaatagaatagagaacccagaaataatgccatacacctacaaacaa--atgatcttcaacaaagttgacaaaaacaagcaatagggaaaggactccccattttataaacggtgctgggataagtgattagctccaggcagaagattaaaactggacgccaaccttgcaccacatataaaaatcaactcaagatggattaaacacttaaatgtaaaaatgaaaactattaatat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29299559 1623 - 170955103 caacaaaatactagcaaaccaaatccaacagcatataaaaacccaatttctTAGCTTTTTGATGAAATAGCTGTttcctcaccttttctatcttctagaggtaacctacattccttggcttatggcccattcttctatctttaaagtcagcagcagagtatcttttctctgacctccagcctccctcttatatggacacaggtgattattttagcccacctgcctaatccaagataatatccccatctcaagattctgagtttgatcacatctat-gaagtccttttgccatgtgaagtaatgtatagtcacaggttccagagattagggtgtgatcatttgcatCCCAGGGAAAAAGCCTACCACGACC---------------------CCTGCCATgatcgagtaggctttatccctgagacaaaagattggttcaacatatgcaaatcaataaatatgattcatcacataaacataaatgaaaacaaaaactgcat-gttatctcaatacatggagaaaaggctttcaataatattcaacatgccttcatgttaaaagccctcaataaactaggcattgaaagaacatacttcaaaataataagagcgatctataaaaaa---------cccacagccaacatcatactgaatgggcaaaagctggaagcattccccttgaaaactggcacaagacattgatgccctctctcaccactcctattcagcatagtattggaagtcctggccagatcaatcaggcaagagacagaaatgaaaggcatccaaataggacaagacaaagttaaattattcctggttgcaaaagacatgaatctgtatg-agaaaaccccatagtcttggcccaaaagctccttgatctgataaacaacttcagaaaagtt----tcaggatataaaagcaatgtacaaaaatttagcattcccatacatcaacagcatccaagctgagggttaaatcaggaatgcaatcccattcaccactgccatgaaaagaataaaatacctagaaatactgctaacctaaaaggtaaaaagtctctacaatgagaattacaaaagactgctaaaagaaatcagaggtgacacaaacaaatggaaaaacttcc--tgctgatgggtactaagac------tcattaaaatggccacaat-gtccaaagcaatttatagattcaatgcaattcatatcaaactagcaatgacattgttcacagaattagaaaa-aaactattttaaaatttgcatggaaccgaaaaagaggcctaatagccaagg-aatcctaagaaaaaagaacaaagctagaggcatcaccttacccaacttatactacagggctacagtaatcaaaacagcatggtactagtaaaaaacaaaacaaaacaaaacaaaaacagatatatagaccaatggaatagaatagagaacccagaaataatgccatacacctacaaacaa--atgatcttcaacaaagttgacaaaaacaagcaatagggaaaggactccccattttataaacggtgctgggataagtgattagctccaggcagaagattaaaactggacgccaaccttgcaccacatataaaaatcaactcaagatggattaaacacttaaatgtaaaaatgaaaactattaatat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2307681 1643 -   2996164 caacaaaatactagcaaaccaaatccaacagcatataaaaacccaatTTCTTAGCTTTTTGATGAAATAGctgtttcctcaccttttctatcttctagaggtaacctacattccttggcttatggcccattcttctatctttaaagtcagcagcagagtatcttttctctgacctccagcctccctcttatatggacacaggtgattattttagcccacctgcctaatccaagataatatccccatctcaagattctgagtttaatcacatctat-gaagtccttttgccatgtaaagtaatgtatagtcacaggttccagagattagggtgtgatcatttGCATCCCAGGGAAAAAGCCTACCACGACCCCTTGCATCCCAGGGATAAAGCCTGccatgatcaagtaggctttatccctgagacaaaagattggttcaacatatgcaaatcaataaatgtgattcatcacataaacataaatgaaaacaaaaactgcat-gttatctcaatacatggagaaaaggctttcaataatattcaacatgccttcatgttaaaagccctcaataaactaggcattgaaagaacatacttcaaaataataagagcgatctataaaaaa---------cccacagccaacatcatactgaatgggcaaaagctggaagcattccccttgaaaactggcacaagacattgatgccctctctcaccactcctattcagcatagtattggaagtcctggccagatcaatcaggcaagagacagaaatgaaaggcatccaaataggacaagacaaagttaaattattcctggttaaaaaagacatgaatctgtatg-agaaaaccccatagtcttggcccaaaagctccttgatctgataaacaacttcagaaaagtt----tcaggatataaaagcaatgtacaaaaatttagcattcccatacatcaacagcatccaagctgagggttaaatcaggaatgcaatctcattcaccactgccatgaaaagaataaaatacctagaaatactgctaacctaaaaggtaaaaagtctctacaatgagaattacaaaagactgctaaaagaaatcagaggtgacacaaacaaatggaaaaacttcc--tgctgatgggtactaagac------tcattaaaatggccacaat-gtccaaagcaatttatagattcaatgcaattcatatcaaactaacaatgacattattcacagaattag-aaa-aaactattttaaaatttgaatggaaccgaaaaagaggcctaatagccaagg-aatcctaagaaaaaagaacaaagctagaggcatcaccttacccaacttatactacagggctacagtaatcaaaacagcatggtactggtaaaaaacaaaacaaaacaaaacaaaaacagatatatagaccaatggaatagaatagagaacccagaaataatgccatacacctacaaacaa--atgatcttcaacaaagttgacaaaaacaagcaatagggaaaggactccccattttataaacggtgctgggataagtgattagctccaggcagaagattaaaactggacgccaaccttgcaccacatataaaaatcaactcaagatggattaaacacttaaatgtaaaaatgaaaactattaatat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       31199 1644 +    766320 caacaaaatactagcaaaccaaatccaacagcatataaaaaCCCAATTTCTTAGCTTTTTGATGAAATAGctgtttcctcaccttttctatcttctagaggtaacctacattccttgacttatggcccattcttctatctttaaagtcagcagcagagtatcttttctctgacctccagcctccctcttatatggacacaggtgattattttagcccacctgcctaatccaagataatatcctcatctcaagattctgaatttaatcacatctat-gaagtccttttgccatgtaaagtaatgtatagtcacaggttccagagattagggtgtgatcatttGCATCCCAGGGAAAAAGCCTACCACGACCCCTTGCATCCCAGGGATAAAGCCTGccatgatcaagtaggctttatccctgagacaaaagattggttcaacatatgcaaatcaataaatgtgattcatcacataaacataaatgaaaacaaaaactgcat-gttatctcaatacatgcagaaaaggctttcaataatattcaacatgccttcatgttaaaagccctcaataaagtaggcattgaaagaacatacttcaaaataataagagcgatctataaaaaa---------ctcacagccaacatcatactgaatgggcaaaagctggaagcattccccttgaaaactggcacaagacattgatgccctctctcaccactcctattcagcatagtattggaagtcctggccagatcaatcaggcaagagacagaaatgaaaggcatccaaataggacaagacaaagttaaattattcctggttgcaaaagacatgaatctgtatg-agaaaaccccatagtcttggcccaaaagctccttgatctgataaacaacttcagaaaagtt----tcaggatataaaagcaacgtacaaaaatttagcattcccatacatcaacagcatccaagctgagggttaaatcaggaatgcaatcccattcaccactgccatgaaaagaataaaatacctagaaatactgctaacctaaaaggtaaaaaatctctacaatgagaattacaaaagactgctaaaagaaatcagaggtgacacaaacaaatggaaaaacttcc--tgctgataggtactaagac------tcattaaaatggccacaat-gtccaaagcaatttatagattcaatgcaattcatatcaaactagcaatgacattgttcacagaattagaaaa-aaactattttaaaatttgcatggaaccgaaaaagaggcctaatagccaagg-aatcctaagaaaaaagaacaaagctagaggcatcaccttacccaacttatactacagggctacagtaatcaaaacagcatggtactggtaaaaaacaaaacaaaacaaaacaaaaacagatatatagaccaatggaatagaatagagaacccagaaataatgccatacacctacaaacaa--atgatcttcaacaaagctgacaaaaacaagcaatagggaaaggactccccattttataaacggtgctgggataagtgactagctccaggcagaagattaaaactggacgccaaccttgcaccacatacaaaaatcaactcaagatggattaaacacttaaatgtaaaaatgaaaactattaatat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28584427 1644 -  71996105 caacaaaatactagcaaaccaaatccaacagcatataaaaacccaatttctTAGCTTTTTGATGAAATAACTGTttcctcaccttttctatcttctagaggtaacctacattccttggcttatggcccattcttctatctttaaagtcagcagcagagtatcttttctctgacctccagtctccctcttatatggacacaggtgattattttagcccacctgcctaatccaagataatatccccatctcaagattctgaatttaatcacatctat-gaagtccttttgccatgtaaagtaatgtatagtcacaggttccagagattagggtgtgatcatttgcatCCCAGGGAAAAAGCCTACCACGACCCCTTGCATCCCAGGGATAAAGCCTGCCATgatcaagtaggctttatccctgagacaaaagattggttcaacatatgcaaatcaataaatgtgattcatcatataaacataaatgaaaacaaaaactgcat-gttatctcaatacatgcagaaaaggctttcaataatattcaacatcccttcatgttaaaagccctcaataaactaggcattgaaagaacatacttcaaaataataagagcgatctataaaaaa---------cccacagccaacatcatagtgaatgggcaaaagctggaagcattccccttgaaaactggcacaagacattgatgccctctctcaccactcctattcagcatagtactggaagtcctggccagagcaatcaggcaagagacagaaatgaaaggcatccaaaaaggacaagacaaagttaaattattcctggttgcaaaagacatgaatctgtatg-agaaaaccccatagtcttggcccaaaagctccttgatctgataaacgacttcagaaaagtt----tcaggatataaaagcaatgtacaaaaatttagcattcccatacatcaacagcatccaagctgagggttaaatcaggaatgcaatcccattcacgactgccatgaaaagaataaaatacctagaaatactgctaacctaaaaggtaaaacatctctacaatgagaattacaaaagactgctaaaagaaatcaaaggtgacacaaacaaatggaaaaacttcc--cgctgatgggtactaagac------tcattaaaatggccacaat-gtccaaagcaatttatagattcaatgcaatttgtatcaaactagcaatgacattgttcacagaattagaaaa-aaactattttaaaatttttatggaaccgaaaaagagccctaatagccaagg-aatcctaagaaaaaagaacaaagctagaggcatcaccttacccaacttatactacagggctacagtaatcaaaacagcatggtactggtaaaaaacaaaaccaaacaaaacaaaaacagatatatagaccaatggaatagaatagagaacccagaaataatgccatacacctacaaacaa--atgatcttcaacaaagctgacaaaaacaagcaatagggaaaggactccccattttataaagggtgctgggataagtgactagctccaggcagaagattaaaactggacggcaaccttgcaccacatacaaaaatcaactcgagatggattaaacacttaaacgtaaaaatgaaaactattaatat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        2698 1644 -    352859 caacaaaatactagcaaaccaaatccaacagcatataaaaacccaatTTCTTAGCTTTTTGATGAAATAGctgtttcctcaccttttctatcttctagaggtaacctacattccttggcttatggcccattcttctatctttaaagtcagcagcagagtatcttttctctgacctccagcctccctcttatatggacacaggtgattattttagcccacctgcctaatccaagataatatccccatctcaagattctgaatttaatcacatctat-gaagtccttttgccatgtaaagtaatgtatagtcacaggttccagagattagggtgtgatcatttGCATCCCAGGGAAAAAGCCTACCACGACCCCTTGCATCCCAGGGATAAAGCCTGccatgatcaagtaggctttatccctgacacaaaagattggttcaacatatgcaaatcaataaatgtgattcatcacataaacataaatgaaaacaaaaactgcat-gttatctcaatacatgcagaaaaggctttcaataatattcaacatgccttcatgttaaaagccctcaataaactaggcattgaaagaacatacttcaaaataataagagcgatctataaaaaa---------cccacagccaacatcatactgaatgggcaaaagctggaagcattccccttgaaaactggcacaagacattgataccctctctcaccactcctattcagcatagtattggaagtcctggccagatcaatcaggcaagagacagaaatgaaaggcatccaaataggacaagacaaagttaaattattcctggttgcaaaagacatgaatctgtatg-agaaaaccccatagtcttggcccaaaagctccttgatctgataaacaacttcagaaaagtt----tcaggatataaaagcaacgtacaaaaatttagcattcccatacatcaacagcatccaagcttagggttaaatcaggaatgcaatcccattcaccactgccatgaaaagaataaaatacctagaaatactgctaacctaaaaggtaaaaaatctctacaatgagaattacaaaagactgctaaaagaaatcagaggtgacacaaacaaatggaaaaacttcc--tgctgatgggtactaagac------tcattaaaatggccacaat-gtccaaagcagtttatagattcaatgcaattcatatcaaactagcaatgacattgttcacagaattagaaaa-aaactattttaaaatttgcatggaaccgaaaaagaggcctaatagccaagg-aatcctaagaaaaaagaacaaagctagaggcatcaccttacccaacttatactacagggctacagtaatcaaaacagcatggtactggtaaaaaacaaaacaaaacaaaacaaaaacagatatatagaccaatggaatagaatagagaacccagaaataatgccatacacctacaaacaa--atgatcttcaacaaagctgagaaaaacaagcaatagggaaaggactccccattttataaacggtgctgggataagtgactagctccaggcagaagattaaaactggacgccaaccttgcaccacatacaaaaatcaactcaagatggattaaacacttaaatgtaaaaatgaaaacaattaatat
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2158035 1616 -   3067355 CAACAAAATACTAGCAAA------CCAACAGCATATAAAAACCCAGTTTCTTAGCTTTTTTATGAAATAGctgtttcctcaccttttctatcatctagaggtaacctacattccttggcttatggcccattcttctatctttaaagtcaacagcagagtatcttttctctgacctccagcctccctcttatatggacacaggtgattattttagcccacctgcctattccaggataatatccccatatcaagattctgaatttaatcacatctat-gaagtccttttgccatgtaaagtaatgtatagtcacaggttccagagattagggtgtgatcatttGCATCCCAGGGAAAAAGCCTACCATGACCCCTTGCAACCCAGGGATAAAGCCTGccatgatcaagtaggctttatccctgagacaaaaggttggttcaacatatgcaaatcaataaatgtgattaatcacataaacagaaatgaaaacaaaaactacac-gttatctcaatacatgcagaaaaggctttcaataatattcaacatcccttgatgttaaaaaccctcaataaactaggcattgaaagaacatacttcaaa--aataagaacaatctataaaaaa---------cccacagctaacatcatactgaatgggcaaaagctggaagcattccccttgaaaactggcagaagacattgatgccctctctcaccactcctattcagcatagtactggaagtcctggccagagcaatcaggcaagagacagaaatgaaaggcatccaaataggacaagacaaagttaaattattcctggttgcaaaagacatgaatctatatg-agaaaaccccatagtcttggcccaaaagctccttgatctgataaacaacttcagaaaagtt----tcaggatataaaagcaacgtacaaaaatttagcattcccatacatcaacagcatccaagctgagggttaaatcaggaatgcagtgccattcacgactgccatgaaaagaataaaatacctagaaatactgctaacctaaaaggtaaaacatctctacaatgagaattacaaaagactgctaaaagaaatcagaagtgacacaaaaaaatggaaaaacttcc--cgctgatgggtactaagac------tcattaaaatggccacaat-gtccaaagcaatttatagattcaatgcaattcgtatcaaactagcaatgacattgttcacagaattagaaaa-aaactattttaaaatttgtatggaaccgaaaaagagccctaatagccaagg-aatcctaagaaaaaagaacaaagccagaggcatcaccttacccaacttatactacagggctacagtaatc--------------------aaaaaaaaaaaaaaaaaaaaaaaaaaaagatgtgtagaccaatggaatagaatagagaacccagaaataatgccatacacctccaaacaa--atgatcttcaacaaagctgacaaaaacaagcaatagggaaaggactccccattttataaagggtgctgggataagtgactagctccaggcagaagattaaaactggacgccaaccttgcaccacatacaaaaatcaactcaagatggattaaacacttaaatgtaaaaatgaaaactattaatat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171596536 1644 - 171630274 CAACCAAATACTGGCAAATGTAATCCCACGGCCCATAAAAACCTAATTTACTAGCTTTTTGATGAAACAGctgttttctcaccttttctatcttctagaggcaacctacattccatggctcttagtccattcctgtatctttaaagtcagcagcagaatatcttctctctgacctccagccttcctcttatatgcacatgtgtgattatgtcagcttacctgcctaatccaggatactctccccatctcaagattctgaatttaatcacacctaaaaaagtccttttgccatgtaaagtaacatataatcacaggttccagagaatagagtgtgatcatttGCATCCCAGGGAAAAAGCCTACCACGATCCCATGCATTGTAGGGATAAAGCctaccatgatcaagaaggctttatccctgagacaaaaggttggttcagtatatgcaaatcaataaatgtgattcatcacataaacggaactgaaaacaaaaaccacatgatcatctcaatacatgcagaaaaggctttcagtaaaattcaacatcccttaatgttgaaaaccctcaaaaaactaggcattgaaggaatatacttcaaaataacatgagaaatctgttaaaaaaaaaacaaccccacagccaaccttatactgaatgggcaaaagctggaagcattccccttgaaaacaggtataagacattgatgctgtctattactacttctattcaacatagtattggaagtcctggccagagcaattaggcaagagaaataaatgagaggcatccaaataggaatagaggaagttaaactatttctttttgcagaagacatgattctatacgtagaaaaccctatagttttggtccaaaagctccttgatttgataaataaccttggaaaa-tt----tcagagtatgaaatcaacacacaaaaatttagcattctcatccatcagcagcatccaagctgaggtctaaatcaggaaagcagtcccattcacaacttccccaaaaagaataaaatacctaggaatactgctaaccaagaagttaaagcatgtctacaatgagaattacaaaacactgctaaaag--------------------aaatggaaaaccatcccatgctggtggatactaacaatcagcatcattacaatgaccgtgtt-gtccaaagcaatttgtagattcaatgcatctcctatcaaactaccaatgacattgttcacagaattagaaaataaaatctcttaaaatttacatggaaccaaataagagccctaatagccaaggcaatcccaaggaaaaagaacaaagctagaggcatcaccttacccaacttata-tacaaggctacagtaatcaaaacagcatggtactggtatgaaaacatatatatatatatatatgtatatacatgtaccagtggaatagaatagagaacccagaaataattctacacacctacaaacaa--atgatattcaacaaagttgacaaaaacaagcaatgggtaaaggagtctgcattttataaagggtactgggataactgactagctccctgcagaagattgaaactggatgcctaccttgcaccacatacaaaaatcaactcaagatggattaaagacttaaatgtaaaaatgaaaactattaatat
i calJac3.chr4             C 0 I 917
e dasNov3.JH570037            304409 9342 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1720888    0 -   2232465 C
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=1460936.000000
s hg38.chr6_GL000254v2_alt    459504 316 +   4827813 aaaaactctggaagataacctaggaaataccattctggacataggacttgggaaacatttcatcatgaagatgccaaaagcaattgcaacaaaaacaaaaattgacaaatgaagcctaattaaactaaagaacgtctcacagtaagagaaactatcaacagtggaaacagacaacctacaaaatgagagaaaatatctgcatacaatgcatttgacaaaggtctaatatctggcatctagaaagaacttaaacaaatttataagaaagaaacaatgccgtttaaaagtcagcaaaagacatgaacagacactttcc
s panTro5.chr6              29440584 316 + 175400573 aaaaactctggaagataacctaggaaataccattctggacataggacttgggaaacatttcatcatgaagatgccaaaagcaattgcaacaaaaacaaaaattgacaaatgaagcctaattaaactaaagaacgtctcacagtaagagaaactatcaacagtggaaacagacaacctacaaaatgaaagaaaatatctgcatacaatgcatttgacaaagatctaatatctggcatctataaagaacttaaacaaatttacaagaaagaaaaagtgccgtttaaaagttggcaaaagacatgaacagacactttcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29676387 316 + 173848474 aaaaactctggaagataacctaggaaataccattctggacataggacttgggaaacatttcatcatgaagatgccaaaagcaattgcaacaaaaacaaaaattgacaaatgaagcctaattaaactaaagaacgtctcacagtaagagaaactatcaacagtggaaacagacaacctacaaaatgagagaaaatatctgcatacaatgcatttgacaaagatctaatatctggcatctataaagaacttaaacaaatttacaagaaagaaaaagtgccgtttaaaagttggcaaaagacatgaacagacactttcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5466945 316 +   6154872 aaaaactctggaagataacctaggaaataccattctggacataggacttgggaaacatttcatcatgaagatgccaaaagcaattgcaacaaaaacaaaaattgacaaatgaagcctaattaaactaaagaacgtctcacagtaagagaaactatcaacagtggaaacagacaacctacaaaatgagagaaaatatctgaatacaatggatttgacaaagatctaatatctggcatctataaagaactgaaacaaatttacaagaaagaaaaagtgccgtttaaaagttggcaaaagacatgaacagacactttcc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29638635 311 + 172585720 aaaaactctggcagataacctaggaaataccattctggacataggacttggcgaagatttcatgatgaagatgccaaaagcaattgcaacaaaaataaaaattgacaaatgaggcctaat-----taaagaacttctcacagtaaaagaaactatcaacagtggaaacagacaacctacaaaatgagagaaaatatctgaatacagtggatttgacaaaggtctaatatccagcatctataaagagcttaaacaaattttcaagaaagaaacaataccatttaaaagttggcaaaagacatgaacagacactttcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29301182 311 - 170955103 aaaaactctggcagataacctaggaaataccattctggacataggacttggcgaagatttcatgatgaagatgccaaaagcaattgcaacaaaaataaaaattgacaaatgaggcctaat-----taaagaacttctcacagtaaaagaaactatcaacagtggaaacagacaacctacaaaatgagagaaaatatctgaatacagtggatttgacaatggtctaatatccagcatctataaagagcttaaacaaattttcaagaaagaaacaataccatttaaaagttggcaagagacatgaacagacactttcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2309324 311 -   2996164 aaaaactctggcagataacctaggaaataccattctggacataggacttggcgaagatttcatgatgaagatgccaaaagcaattgcaacaaaaataaaaattgacaaatgaggcctaat-----taaagaacttctcacagtaaaagaaactatcaacagtggaaacagacaacctacaaaatgagagaaaatatctgaatacagtggatttgacaaaggtctaatatccagcatctataaagagcttaaacaaattttcaagaaagaaacaataccatttaaaagttggcaaaagacatgaacagacactttcc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       32843 316 +    766320 aaaaactctggcagataacctaggaaataccattctggacataggacttggcaaagatttcatgatgaagatgccaaaagcaattgtaacaaaaataaaaattgacaaatgaggcctaattaagctaaagaacttctcacagtaaaagaaactatcaacagtggaaacagacaacctacaaaatgagagaaaatatctgaatacagtggatttgacaaaggtctaatatccagcatctataaagagcttaaacaaattttcaagaaagaaacaataccatttaaaagttggcaaaagacatgaacagacactttcc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28586071 316 -  71996105 aaaaactccagcagataacctaggaaataccattctggacgtaggacttggcaaagatttcatgatgaagatgccaaaaccaattgcaacaaaaacaaaaattgacaaatgaggcctaattaagctagagaacttctcacagtaaaagaaactatcaacagtggaaacagacaacctacaaaatgagagaaaatatctgaaaacaatggatttgacaaaagtctaatatccggcatctataaagaacttaaacaaattttcaagaaagaaacaataccatttaaaagttggcaaaagacatgaacagacactttcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        4342 308 -    352859 aaaaactctggcagataacctaggaaataccattctggacataggacttggcgaagatttcatgatgaagatgccaaaagcaattacaacaaaaataaaaattgacaaatgaggcctaattaagctaaagaacttctcacagtaaaagaaactatcaacagtggaaacagacaacctacaaaatgagagaaaatatctgaatacagtggatttgacaaagg-------tccagcatctataaagagcttaaacaaattttcaagaaagaaacaataccatttaaaagttggc-aaagacatgaacagacactttcc
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2159651 316 -   3067355 aaaaactctggcagataacctaggaaataccattctggacgtaggacttggcaaagatttcatgatgaagatgccaaaagcaattgtaacaaaaacaaaaattgacaaatgaggcctaattaagctaaagaacttctcacagtaaaagaaactatcaacagtggaaacagacaacctacaaaatgagagaaaatatctgaatacaatggatttgacgaaggtctaatatccggcatctataaagaacttaaacaaattttcaagaaagaaacaaaaccatttaaaagttggcaaaaggcatgaacagacactttcc
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            304409 9342 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1720888   0 -   2232465 C
e calJac3.chr4             171598180 917 - 171630274 I
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=4442218.000000
s hg38.chr6_GL000254v2_alt    459820 825 +   4827813 aaaagaaggtacacatgcggccaagcatatgaaaaaatgctcaatatcattaatcattagagaaatgcaaatcaaaaccgcaatgagataccatctcgtaccaggtggaatggctattatcaaaaagtcaaattattaataacagatacatcaaggttatggagaaaa-ggaatgcttatacactgctggtgggaatgtaaattaccttagctatt-gtggaaaatggtgtaatgattcctccaagaacttaaaacagaactactcttccaccaagcaatcccattagcgggtatatacccaaaggaatataaatcattctaccataaagacatatgcacgagtatgttcattgcagcactgttcacaacagcaaatacatgaaatcaacctaaatgcccatcaacagtagattgggtaaagaaaatgtggtacataga-ccccatggaatactatgc---------------------agtcataaaaagaatgaggtcatttcctttgcagcaccatggatggagctgcaggccatcatcctaagcaaactaaatggaaaagagccaaataccacatgttctcacttataagtgggagctaaa-cataagaacacatggatactagaaggtgaaccacatgcactggggtctacttgacggtggagggtgggaggaggaagaagatcagaaaaaatacctattgagtactatgcttattacctggatgatgaaattatctgtactccaaacccctgtgatgcgcagtttacctgtataacaaacctgcacatatacccatgaacctaaaataaaagtt---aaaaaaaCCTAAACCCCAAATTACCTTCAA
s panTro5.chr6              29440900 814 + 175400573 aaaagcagacacacatgcagtcaagcatatgaaaaaatgctcaatatcattaatcattagagaaatgcaaatcaaaaccacaatgagataccgtctcacaccaggcagaatggatattatcaaaaagtcagattattaatagcagatacgtcaaggttatggagaaaagggaatgcttatacactgctggtgggaatgtaaattagtttagctatt-gtggaaaacggtgtgatgattcctcagagaactt-aaacagaactactattcgacccagcaatgccattactgggtatatacccaaaggaatataaatcattctaccataaagacatatgcatgagtatgttcattgcagcactgttcacaacagcaaatacatggaatcaacctaaatggccatcaacagtagattgggtaaagaaaatgtggtacataga-ccccatggaatactatgc---------------------cgtcataaaaagaatgaggtcatttcctttgcagcaccatggatggagctgcaggccatcatcctaagcaaactaaatggaaaagagccaaataccacatgttctcacttataagtgggagctaaa-cataagaacacatggatactagaaggtgaaccacatgcactggggtctacttgacggtggagggtgagaggaggaagaagatcagaaaaaatacctattgagtactatgcttattacctggatgatgaaattatctgtactccaaacccctgtgatgcgcagtttacctgtataacaaacctgcacatatacccatgaacc-----------tt---aaagaaaCCTAAACCCCAAATTACCTTCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29676703 814 + 173848474 aaaagcagacacacatgcagtcaagcatatgaaaaaatgctcaatatcgttaatcattagagaaatgcaaatcaaaaccacaatgagataccgtctcacaccaggcagaatggatattatcaaaaagtcagattattaatagcagatacgtcaaggttatggagaaaagggaatgcttatacactgctggtgggaatgtaaattagtttagctatt-gtggaaaacggtgtgatgattcctcagagaactt-aaacagaactactattcgacccagcaatgccattactgggtatatacccaaaggaatataaatcattctaccataaagacatatgcatgagtatgttcattgcagcactgttcacaacagcaaatacatgaaatcaacctaaatggccatcaacagtagattgggtaaagaaaatgtggtacataga-ccccatggaatactatgc---------------------cgtcataaaaagaatgaggtcatttcctttgcagcaccatggatggagctgcaggccatcatcctaagcaaactaaatggaaaagagccaaataccacatgttctcacttataagtgggagctaaa-cataagaacacatggatactagaaggtgaaccacatgcactggggtctacttgacggtggagggtgagaggaggaagaagatcagaaaaaatacctattgagtactatgcttattacctggatgatgaaattatctgtactccaaacccctgtgatgcacagtttacctgtataacaaacctgcacatatacccatgaacc-----------tt---aaagaaaCCTAAACCCCAAATTACCTTCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5467261 818 +   6154872 aaaagcagacacacatgcagtcaagcatatgaaaaaatgctcaatatcattaatcattagagaaatgcaaatcaaaaccacaatgagataccatctcacaccaggcagaatggatattatcaaaaagtcagattattaatagcagatacgtcaaggttatggagaaaagggaatgcttatacactgctggtgggaatgtaaattagtttagctatt-gtggaaaacggtgtgatgattcctcagagaactt-aaacagaactactattcgacccagcaatgccattactgggtatatacccaaaggaatataaatcattctaccataaagacatatgcacgagtatgttcattgcagcactgttcacaacagcaaatacatgaaatcaacctaaatgcccatcaacagtagattgggtaaagaaaatgtggtacataga-ccccatggaatactatgc---------------------agtcataaaaagaatgaggtcatttcctttgcagcaccatggatggagctgcaggccatcatcctaagcaaactaaatgg-aaagagccaaataccacatgttctcacttataagtgggagctaaa-catgagaacacatggatactagaaggtgaaccacatgcactggggtctacttgacggtggagggtgggaggaggaagaagatcagaaaaaatacctattgagtactatgcttattacctggatgatgaaattatctgtactccaaacccctgtgatgcacagtttacctgtataacaaacctgc------acccatgaacctaaaataaaagtt---aaaaaaaCCTAAACCCCAAATTACCTTCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29638946 827 + 172585720 aaaagaagacacacatgtggccaagcatatgaaaaaatgctcaagatcattaattattagagaaatgcaaatcaaaaccacaatgagataacatctcacaccaggcagaatggatattatcaaaaagtcaaatgattaataacagatacatcaaggttatgaagaaaagggaatgcttatacactgctggtgggaatgtaaattagcttagctatt-gtggaaaatgttgtaatgattcctccaagaacttaaaacagaactactcttcgaccaagcaatcccattactgggtatatacccaaaggaatataaatcattttaccataaacacatatgcacggatatgttcactgcagcactattcacaacagcaaagacatgaaatcaacctaaatgcccatcaacagtagactgggtaaagaaaatgtggtacataga-ccccatggaatactatac---------------------agttgtaaaaagaatgagataatttcctttgcagcaccctggatggagctgcaggccatcatcctaggcaaactaactagaagagagccaaatactgcatgttctcacttataagtgggagttaaa-cataagaacatatggatactaggaggtgaaccacatgcacttgggtctacttgacggtggagggtgggaggaggaagaaaaccagaaagaatacctattatgtaccatgcttattgcctgggtgatgaaatgatctgtactccaaacctctgtgaggcacagtttacccgtataacaaacctgcacatatacccatgaacctaaaataaaagtt--aaaaaaaaTCCAAAACCTAAATTACCTTGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29301493 827 - 170955103 aaaagaagacacacatgtggccaagcatatgaaaaaatgctcaagatcattaattattagagaaatgcaaatcaaaaccacaatgagatagcatctcacaccaggcagaatggatattatcaaaaagtcaaatgattaataacagatacatcaaggttatgaagaaaagggaatgcttatacactgctggtgggaatgtaaattagcttagctatt-gtggaaaatgttgtaatgattcctccaagaacttaaaacagaactactcttcgaccaagcaatcccattactgggtatatacccaaaggaatataaatcattctaccataaacacatatgcacggatatgttcactgcagcactattcacaacagcaaagacatgaaatcaacctaaatgcccatcaacagtagactgggtaaagaaaatgtggtacataga-ccccatggaatactatac---------------------agttgtaaaaagaatgagataatttcctttgcagcaccctggatggagctgcaggccatcatcctaagcaaactaactagaagagagccaaatactgcatgttctcacttataagtgggagttaaa-cataagaacatatggatactaggaggtgaaccacatgcacttgggtctacttgacggtggagggtgggaggaggaagaaaaccagaaagaatacctattatgtaccatgcttattgcctgggtgatgaaatgatctgtactccaaacctctgtgaggcacagtttacccgtataacaaacctgcacatatacccatgaacctaaaataaaagtt--aaaaaaaatccaAAACCTAAATTACCTTGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2309635 827 -   2996164 aaaagaagacacacatgtggccaagcatatgaaaaaatgctcaagatcattaattattagagaaatgcaaatcaaaaccacaatgagatagcatctcacaccaggcagaatggatattatcaaaaagtcaaatgattaataacagatacatcaaggttatgaagaaaagggaatgcttatacactgctggtgggaatgtaaattagcttagctatt-gtggaaaatgttgtaatgattcctccaagaacttaaaacagaactactcttcgaccaagcaatcccattactgggtatatacccaaaggaatataaatcattctaccataaacacatatgcacggatatgttcactgcagcactattcacaacagcaaagacatgaaatcaacctaaatgcccatcaacagtagactgggtaaagaaaatgtggtacataga-ccccatggaatactatac---------------------agttgtaaaaagaatgagataatttcctttgcagcaccctggatggagctgcaggccatcatcctaagcaaactaactagaagagagccaaatactgcatgttctcacttataagtgggagttaaa-cataagaacatatggatactagaaggtgaaccacatgcacttgggtctacttgacggtggagggtgggaggaggaagaaaaccagaaagaatacctattatgtaccatgcttattgcctgggtgatgaaatgatctgtactccaaacctctgtgaggcacagtttacccgtataacaaacctgcacatatacccatgaacttaaaataaaagtt--aaaaaaaaTCCAAAACCTAAATTACCTTGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       33159 828 +    766320 aaaagaagacacacatgtggccaagcatatgaaaaaatgctcaagatcattaattattagagaaatgcaaatcaaaaccacaatgagatagcatctcacaccaggcagaatggatattatcaaaaagtcaaattattaataacagatacatcaaggttatggagaaaagggaatgcttatacactgctggtgggaatgtaaattagcttagctatt-gtggaaaatggtgtaatgattcctccaagaacttaaaacagaactactcttcgaccaagcaatcccattactgggtatatacccaaaggaatataaatcattctaccataaacacatatgcacgagtatgttcactgcagcactattcacaacagcaaagacatgaaatcaacctaaatgcccatcaacagtagactgggtaaagaaaatgtggtacataga-ccccatggaatactatac---------------------agttgtaaaaagaatgagataatttgctttgcagcaccctggatggagctgcaggccatcatcctaagcaaactaactagaagagagccaaatactgcatgttctcacttataagtgggagttaaa-cataggaacatatggatactaggaggtgaaccacatgcacttgggtctacttgacggtggagggtgggaggaggaagaaaatcagaaagaatacctattatgtaccatgcttattg-ctgggtgatgaaatgatctgtactccaaacctctgtgaggcacagtttacccgtataacaaacctgcacatatacccatgaacctaaaataaaagttaaaaaaaaaaTCCAAAACCTAAATTACCTTGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28586387 824 -  71996105 aaaagaagacacacatgtggccaagcatatgaaaaaatgctcaagatcattaatcattagagaaatgcaaatcaaaaccac---gagatagcatctcacaccaggcagaatggatattatcaaaaagtcaaattattaataacagatacatcaaggttatggagaaaagggaatgcttatacaccgctggtgggaatgtaaattagcttagctatt-gtggaaaatggcgtaatgattcctccaagcacttaaaacagaactactcttcgaccaagcaatcccattactgggtatatacccaaaggaatataaatcattctaccataaacacatatgcatgagtatgttcactgcagcactattcacaacagcaaagacatgaaatcaacctaaatgcccatcaacagtagactgggtaaagaaaatgtggtacataga-ccccatggaatactatac---------------------agttgtaaaaagaatgagataatttcctttgcagcaccctggatggagctgcaggccatcatcctaagcaaactaactagaagagagccaaatactgcatgttctcacttataagtgggagttaaa-cataagaacatacggatactaggaggtgaaccacatgcacttgggtctacttgacggtggagggtgggaggaggaagaaaaccagaaagaatacctattatgtaccatgcttattgcctgggtgatgaaatgatctgtactccaaacctctgtgaggcacagtttacccgtataacaaacctgcacatatacccatgaacctaaaataaaagtt--aaaaaaaatccaAAACCTAAATTACCTTGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        4650 829 -    352859 aaaagaagacacacatgtggccaagcatatgaaaaaatgctcaagatcattaatcattagagaaatgcaaatcaaaaccacaatgagatagcatctcacaccaggcagaatggctattatcaaaaagtcaaatgattaataacagatacctcaaggttatgaagaaaagggaatgcttatacactgctggtgggaatgtaaattagcttagctattaaaggaaaatggtgtaatgattcctccaagaacttaaaccagaactactcttcgaccaagcaatcccattactgggtatatacccaaaggaatataaatcattctaccataaacacatatgcacggatatgttcactgcagcactattcacaacagcaaagacatgaaatcaacctaaatgcccatcaacagtagactgggtaaagaaaatgtggtacataga-ccccatggaatactacac---------------------agttgtaaaaagaatgagataatttcctttgcagcaccctggacggagctgcaggccatcatcctaagcaaactaactagaaaagagccaaatactgcatgttctcacttataagtgggagttaaa-cataagaacatatggatactaggaggtgaaccacacgcactcgggtctacttgacggtggagggtgggaggaggaagaaaatcagaaagaatacctattatgtaccatgcttattacctgggtgatgaaatgatctgtactccaaacctctgtgaggcacagtttacctgtgtaacaaacctgcacatatacccatgaacctaaaataaaagtt-aaaaaaaaaTCCAAAACCTAAGTTACCTTGAT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2159967 828 -   3067355 aaaagaagacacacatgtggccaagcatatgaaaaaacgctcaagatcattaatcattagagaaatgcaaatcaaaaccacaatgaggtagcatctcacaccaggcagaatggatatcatcaaaaagtcaaattattaataacagatacatcaaggttatggagaaaagggaatgcttatacactgctggtgggaatgtaaattagcttagttatt-gtggaaaatggtgtaatgattcctccaagaacttaaaacagaactactcttcgaccaaacaatcccattactgggtatatacctaaaggaatataaatcattctaccataaacacatatgcaccagtatgttcattgcagcactattcacaacagcaaagacatgaaatcaacctaaatgcccatcaacagtagactgggtaaagaaaatgtggtacatagacccccatggaatactatac---------------------agttgtaaaaagaatgagataatttcctttgcagcaccctggatggagctgcaggccatcatcctaagcaaactaactagaaaacagccaaatactgcatgttgtcacttataagtgggagttaaa-cataagaacatacggatactaggaggggaaccacatatacttgggtctacttgatggtggagggtgggaggaggaagaaaatcagaaagaatacctattatgtactgtgcttattgcctgggtgatgaaatgatctgtactccaaacctctgtgaggcagagtttacctgtataacaaacctgcacatatacccatgaacctaaaataaacgtt--aaaaaaaaTCTAAAACCTAAATTACCTTGAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171599097 840 - 171630274 aaaagaagacacacatgcagccaagcatataaaaaaatcctcagtaccattaatcactagagaaatgcaaatcaaaaccacgatgaaataccattttgtagcacgcagaatggctattatcaaaaagctaaattattaataacagatacgtcaaggttacagagaaaggggaatgcttatatactgctggtgggaatgtaaattagtttaactatt-gtggaaaatggtgtgatgattcctcaaagaactttaaatggaagtactgttcgacccagcaatcccataactgggtatatgctcaaagaaatacaaattattctatcataaagacatatgcacgagtatgttcgctgcagcactattcacaacagcagagacatgaaat-aacctaaatgcccatcaacagtagacagagtaaagaaaatgtggtacatgga-ccccatgaaatagtatgtcgtaaaaacaatgagaatacaagtcataaaaagaatgagatcatttccttcgcagcaccatgaagggagctgccggccatcatcctaagcacactga--gaaagagagctgagttctgcatgttctcacttacacgtgagagctaaaccataagaacacacggattctaggagatgagccgcacacactggggtctacttgatggtgacgggtgggaggaggaag---atcagaaaaaatacctagtatgtactacgcttattatttgagtgatgaaattatctgtgctccaaaccactgtgatgcacagtttacctgtgtaacaaagctgcacatatacccatgaagc-----taaaagttaaaaaaaaTACCCCAAACCCAAATTACCTTCAT
i calJac3.chr4             I 917 C 0
e dasNov3.JH570037            304409 9342 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1720888   0 -   2232465 C
e nomLeu3.chr1a             74382056 21791 + 122973662 T

a score=32138.000000
s hg38.chr6_GL000254v2_alt    460645 6 +   4827813 CCTTCA
s panTro5.chr6              29441714 6 + 175400573 CCTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29677517 6 + 173848474 CCTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5468079 6 +   6154872 CCTTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74360265 6 + 122973662 CTTTCA
i nomLeu3.chr1a            T 21791 C 0
s rheMac8.chr4              29639773 6 + 172585720 TCTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29302320 6 - 170955103 TCTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2310462 6 -   2996164 TCTTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       33987 6 +    766320 TCTTTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28587211 6 -  71996105 TCTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        5479 6 -    352859 TCTTTA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2160795 6 -   3067355 TCTTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171599937 6 - 171630274 TCTTTA
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            304409 9342 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1720888 0 -   2232465 C

a score=1199925.000000
s hg38.chr6_GL000254v2_alt    460651 210 +   4827813 TGAGTTTTTACATTTGAAAGTTAAATCGATAACTTAATGACAAT---AATTCAACTCTCTCATGCTTATCCCCCTCATCTAACCCAAAACAAAACA--------------------------------AGATGGGATGCTGAGGTGAGGAACCTTT-----G-----AATTTTTAAATAGCATTAGGTCTAGCAGAGCCTCAGAAAGACACGTTTACATTAAGAGGACTTTGACTATTGATATGGGCATGTAAGT
s panTro5.chr6              29441720 210 + 175400573 TGAGTTTTTACATTTGAAAGTTAAATCGATAACTTAATGACAAT---AATTCAACTCTCTCATGCTTATCCCCCTCGTCTAACCCAAAACAAAACA--------------------------------AGATGGGATGCTGAGGTGAGGAACCTTT-----G-----AATTTTTAAATAGTATTAGGTCTAGCAGAACCTCAGAAAGACACGTTTACATTAAGAGGACTTTGACTATTGATATGGGCATGTAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29677523 209 + 173848474 TGAGTTTTTACATTTGAAAGTTAAATCGATAACTTAATGACAAT---AATTCAACTCTCTCATGCTTATCCCCCTCGTCTAACCCAAAACAAAACA--------------------------------AGATGGGATGCTGAGGTGAGGAACCTTT-----G-----AA-TTTTAAATAGTATTAGGTCTAGCAGAACCTCAGAAAGACACGTTTACATTAAGAGGACTTTGACTATTGATATGGGCATGTAAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5468085 210 +   6154872 TGAGTTTTTACATTTGAAAGTTAAATCGATAACTTAATGACAAT---AATTCAACTCTCTCATGCTTATCCCCCTCATCTAACCCAAAACAAAACA--------------------------------AGATGGGATGCTGAGGTGAAGAACCTTT-----G-----AATTTTTAAATATTATTAGGTCTAGCAGAACCTCAGAAAGACACGTTTACATTAAGAGGACTTTGACTATTGATATGGGCATGTAAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74360271 215 + 122973662 TGAGTTTTTATGCTTGCAATTCAGACTGATAAGTGAATGACAGTGAGAATTCAATTCTCCAATGCCTACTCTCATAATCTAA-AGAAAGCAATGCA-------------------------------GAAATGGTTTCCTGAAAGGAAGAATCTTT-----GTTTTTAGTTTTTTAAAG--ATTAGGTTTA-CTGGATGTCAGAAAAATATGTTTACATTAAGGCAACATTGAGTTTTGATGATGGTGTGTAAGT
i nomLeu3.chr1a            C 0 I 43201
s rheMac8.chr4              29639779 239 + 172585720 TGAGTTGTTACATTTGAAAATTCAATTGATGAGTTAATGACAAT---AATTTAACTCTCTCATGCTTATCCCCCTCATCTAACCAaaacaaacaaacaaacaaaaacaaacaaacaaaaaaacCCCTAAGATGGAATGTTGAGGTGAGGAACCTTT-----G-----AATTTTTAAAT---ATTAGATCTACCAGAGCCTCAGAAAGACATGTCTACATTAAGAGGACGTTGACTATTGATATAGACATGTAAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29302326 239 - 170955103 TGAGTTGTTACATTTGAAAATTCGATTGATGAGTTAATGACAAT---AATTTAACTCTCTCATGCTTATCCCCCTCATCTAACCAAAACaaacaaacaaacaaaaacaaacaaaccaaaaaaaccctaAGATGGAATGTTGAGGTGAGGAACCTTT-----G-----AATTTTTAAAT---ATTAGATCTACCAGAGCCTCAGAAAGACATGTCTACATTAAGAGGACGTTGACTATTGATATAGACATGTAAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2310468 239 -   2996164 TGAGTTGTTACATTTGAAAATTCGATTGATGAGTTAATGACAAT---AATTTAACTCTCTCATGCTTATCCCCCTCATCTAACCAaaacaaacaaacaaacaaaaacaaacaaacaaacaaaACCCTAAGATGGAATGTTGAGGTGAGGAACCTTT-----G-----AATTTTTAAAT---ATTAGATCTACCAGAGCCTCAGAAAGACATGTCTACATTAAGAGGACGTTGACTATTGATATAGACATGTCAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       33993 239 +    766320 TGAGTTGTTACATTTGAAAATTCGATTGATGAGTTAATGACAAT---AATTTAACTCTCTCATGCTTATCCCCCTCATCTAACCAaaacaaacaaacaaacaaaaacaaacaaacaaacaaaAACCTAAGATGGAATGTTGAGGTGAGGAACCTTT-----G-----AATTTTTAAAT---ATTAGATCTACCAGACCCTCAGAAAGACATGTCTACATTAAGAGGACGTTGACTATTGATATAGACACGTAAGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28587217 225 -  71996105 TGAGTTGTTACATTTGAAAATTCGATTGATGAGTTAATGACAAT---AATTTAACTCTCTCATGCTTATCCCCCTCATCTAAC---------CAAA-----ACaaacaaacaaacaaataaaaaccTAAGATGGAATGTTGAGGTGAGGAACCTTT-----G-----AATTTTTAAAT---ATTAGATCTACCAGAGCCTCAGAAAGACATGTTTACATTAAGAGGACGTTGACTATTGATATAGACATGTAAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        5485 231 -    352859 TGAGTTGTTACATTTGAAAATTCGATTGATGAGTTAATGACAAT---AATTTAACTCTCTCATGCTTATCCCCCTCATCTAACCaaagaaaacaaa-----acaaacaaacaaaca---aaaaaCCTAAGATGGAAAGTTAAGGTGAGGAACCTTT-----G-----AATTTTTAAAT---AATAGATCTATCAGAGCCTCAGAAAGACATGTTTACATTAAGAGGACGTTGACTATTGATATAGGCATCTAAGT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2160801 216 -   3067355 TGAGTTGTTACATTTGAAAATTCGATTGATGAGTTAATGACAAT---AATTTAACTCTCTCATGCTTATCCCCCTCATCTAACCaaaaaaaaaaaa-----------------------aaaaaTCTAAGATGGAATATTGAGGTGAGAAACCTTT-----G-----AATTTTTAAAT---ATTAGATCTACCAGAGCCTCAGAAAGACATGTTTACATTAAGAGGACGTTGACTATTGATATAGGCATGTAAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171599943 207 - 171630274 TGAGTTTTTACATTTGAAAATTAGATTCATAACTTAGTGACAAT---AATTTAACTCTCTCATGCCTATCCCCCTCATGTAACCAAAACCAAAACA--------------------------------AGGTGGAATGCTATGTTGAGATACCTCT-----G-----AATTTTTAAAA---ATTAGGTTTAGCAGAGCCTCAGAAAGACATGTTAACATTAAGAGGATTTTGACTATTGATTTAGGCATGTAAGT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1720888 185 -   2232465 TGAGTTTTTACATTTGAAATT---GTTACTATGTTAATGACAAA------------------TGACTACCCTCCTGATCTAATCCAAAATAAAACA--------------------------------GGGATAGATATTGAGGGGAGGAATCTTTCTTTAA-----ATTTCTTCAAT---ATTAGGCCT---------CCAAAAAGACATGTTTACATTAAGAGGAATTTGACTACTGATGTGGGCATGTAAGT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            304409 9342 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I

a score=634772.000000
s hg38.chr6_GL000254v2_alt    460861 107 +   4827813 TCTTTACTGCCACGTTCCTAGTAATTCCTGAATTGCACATGTATGAAATGACATTAATTCTCTCATACTTTAGGGTTGCTTGTTAGTGCCTAGAAGGAATACAGTCT
s panTro5.chr6              29441930 107 + 175400573 TCTTTACTGCCACATTCCTAGTAATTCCTGAATTGCACATGTATGAAATGACATTAATTCTCTCATACTTTAGGGTTGCTTGTTAGTGCCTAGAAGGAATACAGTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29677732 107 + 173848474 TCTTTACTGCCACATTCCTAGTAATTCCTGAATTGCACATGTATGAAATGACATTAATTCTCTCATACTTTAGGGTTGCTTGTTAGTGCCTAGAAGGAATACAGTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5468295 106 +   6154872 TCTTTACTGCCAC-TTCCTAGTAATTCCTGAATTGCACATGTATGAAATGACATTAATTCTCTCATACTTTAGGGTTGCTTGTTAGTGCCTAGAAGGAATACAGTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74403687  99 + 122973662 TCTTTA--------TTATCAGTGATTCCGGAATAGCACATGTGTAAAAATACATCTATCCTCCCAGATTTTGGGATTACTGGATGTGGCCTTGGATGAACAAAGTCC
i nomLeu3.chr1a            I 43201 C 0
s rheMac8.chr4              29640018 107 + 172585720 TCTTTACTGCCACGTTCTTAGTAATTCCTGAAGTGTACGTGTATGAAATGACATTAATTCTCTCATACTTTACGGTTGCTTATTAGTGCCTAGAAGAAATACAGTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29302565 103 - 170955103 TCTTTACTGCCACGTTCTTAGTAATTCCTGAAGTGTACGTGTATGAAATGAC----ATTCTCTCATACTTTACGGTTGCTTATTAGTGCCTAGAAGAAATACAGTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2310707 107 -   2996164 TCTTTACTGCCACGTTCTTAGTAATTCCTGAAGTGTACGTGTATGAAATGACATTAATTCTCTCATACTTTACGGTTGCTTATTAGTGCCTAGAAGAAATACAGTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       34232 107 +    766320 TCTTTACTGCCACGTTCTTAGTAATTCCTGAAGTGTACGTGTATGAAATGACATTAATTCTCTCATACTTTAGGGTTGCTTATTAGTGCCTAGAAGAAATACAGTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28587442 107 -  71996105 TCTTTACTGCCACGTTCTTACTAATTCCTGAAGTGTATGTGTATGAAATGACATTAATTCTCTCATACTTTAGGGTTGCTTGTTAGTGCCTAGAAGAAATACAGTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        5716 107 -    352859 TCTTTACTGCCACGTTCTTAGTAACTCCTGAAGTGTACATGTATGAAATGACATGAATTCTCTCATACTTTAGGGTTGCTTGTTGGTGCCTAGAAGAAATACAGTCT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2161017 107 -   3067355 TCTTTACTGCCACGTTCTTAGTAATTCCTGAAGTGTACATGTATGAAATGACATTAATTCTCTCATACTTTAGGGTTGCTTGTTAGTGCCTAGAAGAAATGCAGTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171600150 107 - 171630274 TATTTACTGCCATGTTCTTAGTAATTCCTGAATTGTACATGAATGAAATGACATGAATTCTCTCATACTTCAGCGTTTCTTGTTAGTGCCTGGAAGGCAGACAGTCT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1721073  79 -   2232465 TCTTAACCACCAAGTTATTAG-----------------------ACAGTGATCTTAATACTCCCATATTTTGAGATTACTT-TTAGGGTCAAGGATAGACA----CC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            304409 9342 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I

a score=2652651.000000
s hg38.chr6_GL000254v2_alt    460968 375 +   4827813 CTGTGGCCAGTCTCCTTGGATCAACAAGAGCCTTGTAGTTTCCC-ATTTTTCATGTGCTA--ATAGTGAAAATGTTTAGAAAGCCCCATCTATCCTCCCACATTGGCAT-CCCACTGATGTGCTGTCCTGGTTGCTAGGTGCAGATTTAGGTTCCAAGCAGAACACTGC-TAGTGTTCTCTGCAGTTTGTTGTAGAATCATAGTGTCTTGGCAACCAAAGGCAGATCTGGTGCTATGGAGGACCTGCTTACTGCTATGAGGTGTTACTTTATAGAGGTCCTGGAGAAGCTGATTGAGGCCACGTCAATGTTGCAAGGAGACATGAGACTCACATCAGAGTTCTATGGCTTAACATGGGGGATGGTG----GTAAGTGTGGCTCT
s panTro5.chr6              29442037 375 + 175400573 CTGTGGCCAGTCTCCTTGGATCAACAAGAGCCTTGTAGTTTCCC-ATTTTTCATGTGCTA--ATAGTGAAAATGTTTAGAAAGCCCCATCTATCCTCCCACATTGGCAT-CCCACTGATGTGCTGTCCTGGTTGCTAGGTGCAGATTTAGGTTCCAAGCAGAACACTGC-TAGTGTTCTCTGCAGTTTGTTGTAGAATCATAGTGTCTTGGCAACCAAAGGCAGATCTGGTGCTATGGAGGACCTGCTTACTGCTATGAGGTGTTACTTTATAGAGGTCCTGGAGAAGCTGATTGAGGCCACGTCAATGTTGCAAGGAGACATGAGACTCACATCAGAGTTCTATGGCTTAACATGGGGGATGGTG----GTAAGTGCAGCTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29677839 375 + 173848474 CTGTGGCCAGTCTCCTTGGATCAACAAGAGCCTTGTAGTTTCCC-ATTTTTCATGTGCTA--ATAGTGAAAATGTTTAGAAAGCCCCATCTATCCTCCCACATTGGCAT-CCCACTGATGTGCTGTCCTGGTTGCTAGGTGCAGATTTAGGTTCCAAGCAGAACACTGC-TAGTGTTCTCTGCAGTTTGTTGTAGAATCATAGTGTCTTGGCAACCAAAGGCAGATCTGGTGCTATGGAGGACCTGCTTACTGCTATGAGGTGTTACTTTATAGAGGTCCTGGAGAAGCTGATTGAGGCCACGTCAATGTTGCAAGGAGACATGAGACTCACATCAGAGTTCTATGGCTTAACATGGGGGATGGTG----GTAAGTGCAGCTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5468401 374 +   6154872 CTGTGGCCAGTCTCCTTGGATCATCAAGAGCCTTGTAGTTTCCC-ATTTTTCATGTGCTA--ATAGTGAAAATGTTTAGAAAGCCCCATCTATCCTCCCACATTGGCAT-CCCACTGATGTGCTGTCCTGGTTGCTAGGTGCAGATTTAGGTTCCAAGCAGAACACTGC-TAGTGTTCTCTGCAGTTTGTTGTAGAATCATAGTGTCTTGGCAACCAAAGGCAGATCTGGTGCTATGGAGGACCTGCTTACTGCTATGAGGTGTTACTTTATACAGGTCCTGGAG-AGCTGATTGAGGCCACGTCAATGTTGCAAGGAGACATGAGACTCACATCAGAGTTCTATGGCTTAACATGGGGGATGGTG----GTAAGTGCAGCTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74403786 372 + 122973662 CAGTGGCCAATCTTCCCTGGTGAAAGTCAGCCTTGTA-CATCTA-ACTTAATGTGTGCTA-TGAAATGAAAATGTTTTGGAAGCACTGCCTGTTCTCTC---TCGCCACGCACACTGCTGGTCTCTCTTGGTTGCCAGGCACTGGTTTAGGTTCTGAGCAGAATACTCCACAGTGTTCTCTACAGTGTGTTGTAGAATAGGAGGGTCCTGGCAACCTGAGGCAGAGCTGGTGCTACAGAGTACCTGCTTACTGCTATAAAGTTTTACTTTATACGAATTCTGGAGAAGCTGAGTGAGGCCATGTC--TGTTACCAGGAGACATGAGACTCACAGCAGATCTCTCTGGCTTAACATGGGAGGTGGTG----GTAAGTGCAGCTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29640125 375 + 172585720 TTGTGGTCAGTCTCCTTGGATCAACAAAAG-CCTGTACTTTCCC-GTTTTTCTTGTGTTA-TTTAGTGAAAATGTTGAGAAAGGACCATCTATCCTGCGCCATTGGCAT-CCCACTGATGCTCTGTCCTGGTTGCTAGGTGCAGATTTAGGTTCCAAGCAGAACACTCC-TAGTGTTCTCTGCGGTTTGTTGTAGCATCAGAGTATCTTGGCAACCAAAGGCAGAGCTGGTGCTATGGAGGACCTGCTTACTGCTATGAGGTATTACTTTATGCAGGTCCTGGAGAAGCTGATTGAGGCCAAGTCACTGTTGCAAGGAGACACGAGACTCACATCAGAGTTCTATGGCTTAACATGGGAGATGGTG----GTAAGTGCAGCTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29302668 375 - 170955103 TTGTGGTCAGTCTCCTTGGATCAACAAAAG-CCTGTACTTTCCC-GTTTTTCACGTGCTA-TTTAGTGAAAATGTTGAGAAAGCACCATCTATCCTGCGCCATTGGCAT-CCCACTGATGCTCTGTCCTGGTTGCTAGGTGCAGATTTAGGTTCCAAGCAGAACACTCC-TAGTGTTCTCTGCAGTTTGTTGTAGCATCAGAGTGTCTTGGCAACCAAAGGCAGAGCTGGTGCTATGGAGGACCTGCTTACTGCTATGAGATATTACTTTATGCAGGTCCTGGAGAAGCTGATTGAGGCCAAGTCACTGTTGCAAGGAGACACGAGACTCACATCAGAGTTCTATGGCTTAACATGGGAGATGGTG----GTAAGTGCAGCTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2310814 375 -   2996164 TTGTGGTCAGTCTCCTTGGATCAACAAAAG-CCTGTACTTTCCC-GTTTTTCATGTGCTA-TTTAGTGAAAATGTTGAGAAAGCACCATCTATCCTGCGCCATTGGCAT-CCCACTGATGCTCTGTCCTGGTTGCTAGGTGCAGATTTAGGTTCCAAGCAGAACACTCC-TAGTGTTCTCTGCGGTTTGTTGTAGCATCAGAGTGTCTTGGCAACCAAAGGCAGAGCTGGTGCTATGGAGGACCTGCTTACTGCTATGAGGTATTACTTTATGCAGGTCCTGGAGAAGCTGATTGAGGCCAAGTCACTGTTGCAAGGAGACACGAGACTCACATCAGAGTTCTATGGCTTAACATGGGAGATGGTG----GTAAGTGCAGCTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       34339 375 +    766320 TTGTGGTCAGTCTCCTTGGATCAACAAAAG-CCTGTACTTTCCC-GTTTTTCATGTGCTA-TTTAGTGAAAATGTTGAGAAAGCACCATCTATCCTGCCCCATTGGCAT-CCCACTGATGCTCTGTCCTGGTTGCTAGGTGCAGATTTAGGTTCCAAGCAGAACACTCC-TAGTGTTCTCTGCAGTTTGTTGTAGAATCAGAGTGTCTTGGCAACCAAAGGCAGAGCTGGTGCTATGGAGGACCTGCTTACTGCTATGAGGTGTTACTTTATACAGGTCCTGGAGAAGCTGATTGAGGCCAAGTCACTGTTGCAAGGAGACATGAGACTCACATCAGAGTTCTATGGCTTAACATGGGAGATGGTG----GTAAGTGCAACTAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28587549 375 -  71996105 TTGTGGTCAGTCTCCTTGGATCAACAAAAG-CTTGTACTTACCC-GTTTTTCATGTGCTA-TTTAGTGAAAATGTTGAGAAAGCACCATCTATCCTGCCCCATTGGCAT-CCCATTGATGTGCTGTCCTGGTTGCTAGGTGCAGATTTAGGTTCCAAGCAGAACACTCC-TAGTATTCTCTGCAGTTTGTTGTAGAATCAGAGTGTCTTGGCAACCAAAGACAGATCTGGTGCTGTGGAGGACCTGCTTACTGCTATGAGGTATTACTTTATGCCGTTCCTGGAGAAGCTGATTGAGGCCAAGTCACTGTTGCAAGGAGACACGAGACTCACATCAGAGTTCTATGGCTTACCATGGGAGATGGTG----GTAAGTGCAGCTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        5823 376 -    352859 TTGTGGTCAGTCTCCTTGGATCAATAAAAGCCTCGTACTTTCCC-GTTTTTCATGTGCTA-TTTAGTGAAAATGTTGAGAAAGCCCCATCTATCCTGCCCCATTGGCAT-CCCATTGATGTGCTGTCCTGGTTGCTAGGTGCAGATTTAGGTTCCAAGCAGAACACTCC-CACTGTTCTCTGCAGTTTGTTGTAGAATCAGAGTGTCTTGGCAACCAAAGGCAGATCTGGTGCTATGGAGGACCTGCTTACTGCTATGAGGTGTTACTTTATGCAGGTCCTGGAGAAGTTGATTGAGGCCAAGTCACTGTTGCAAGGAGACATGAGACTCACATCAGAGTTCTATGGCTTACCATGGGAGATGGTG----GTAAGTGCAGCTGT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2161124 376 -   3067355 TTGTGGTCAGTCTCCTTGGATCAACAAAAGCCTTGTACTTCCCC-GTTTTTCATGTGCTA-TTCAGTGAAAATGTTGAGAAAGCACCATCTATCCTGACCCATTGGCAT-CCCATTGATGTGCTGTCCTGGTTGCTAGGTGCAGATTTAGGTTCCAAGCAGAACACTCC-TAGTGTTCTCTGCAGTTTGTTGTAGAATCAGAGTTTCTTGGCAACCAAAGGCAGATCTGGTGCTATGGAGGACCTGCTTACTGCTATGAGGTGTTACTTTATGCAGGTCCTGGAGAAGCTGATTGAGGCCAAGTCACTGTTGCAAGGAGACATGAGACTCACATCAGAGTTCTATGGCTTAACATGGGAGATGGTG----GTAAGTGCAGCTAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171600257 378 - 171630274 CTGT-GCCGGTCTCCTTGGATCAACAAGAGCCTTGTAGCTTCTCAATTTTTCATGTGCTATTTTAGGGAAAATGTTTAGAAAGCACCATCTGTCCTCCCCCATTGGCAC-CCCACTGATGCTCTGTCCTGGTTGCTAGGTGCAGATTTAGGTTCCAAGCAGAATGCTCC-TAGTGTTCTCTGCAGT---TTGTAGAATCAGAGGGTCTTGGCAACCAAAGGTGGATTTGGTGCTGTGGAAAATCTGCTTACTGCTAAGAGGTATTACTTTACACAGGTCCTGGAGAAGCTGATGGAGGCCAAGTCAATGTTGCAAGGAGACATGAGACTCACATCAGAGTTCTATGGTTTCACCTGGGAGATGGTGGTAAGTAAGTGCAGCTAT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1721152 356 -   2232465 TTGTGGCTAGCAT--TTTGTTCAAGAATAG-CCTGTATGTTTCT-ATGTTATATGTTTTG-TTAAGCGAAAATGTTTGGGAAATACTGAATACCCTCCCTCATTGCCAT-CACATTGATGGTCTCAATTGGTTGCCAGGTGAAGACTTAGGTTCCAAACAGAACACTCC-TAGTGTTCTTTGCAGTTTGTTGTGGAGAC------TCATGGC-ACCTGAGGCAGAT-TGGTAGTATGGAGGACCTGCTTGCTGCTATGAAGTCCTACTTGATACA-----TGTAGG----GAGTGAGGCCATGTCAGTGTTTCCAGGAGACACGAGACTCGCATAAAATTTCTGTGGCCTAACATGGGAGATGATG----GTAAGTGAAAATAT
i otoGar3.GL873742         C 0 I 551
s dasNov3.JH570037            313751 358 -    859332 CTGTTGCCAGTCTCCTTTTTCCAAGAGCAGTCTTGTACTTTTCC-ACTCATT-TGTGCTT-TACCATGAAAATGTTTGGGACATGCTCTCTGTTTTCCCAAATCACGCC-TTCGCTCACTCTCTCCTCTGGTTGCTAGGTTTTGGTTGAAGTTCCAAGCAGACTGCTCA-C-----------TAGTTTCTTGTGGGATAGTAGGGTCCTGGCAACCTGAGG-AAATTTGGTACCATGGAGGACTCA-----TGCTAGGATGTTCTGCTTCATATACATCCTGGTGAAGCTGAGTGAGGCCATGTCAGTGTTGCAAGGAGTCACAGAACTTAGTCCAGAGCTCTATGGTTTAATGTGGGAGTTGGTG----CTAAGTGCAGCTGT
i dasNov3.JH570037         I 9342 C 0
e canFam3.chr35             26138974 64429 +  26524999 I

a score=750815.000000
s hg38.chr6_GL000254v2_alt    461343 122 +   4827813 ATTTGGATTTTGTAATTA--TA----AAAGCCCA--CTTTATGTAGAGAGAAAAAA-AAGAGTTTACCAGAGAAGTTTCTTCTGTAGTTGAAGACAAATGT-AATGTTTTAA-TAAATTAGGCTGAT----------------------------------------------------------------------------------------------------------TAAAAA
s panTro5.chr6              29442412 122 + 175400573 ATTTGGATTTTGTAATTA--TA----AAAGCCCA--CTTTATGTAGAGAGAGTAAA-AAGAGTTTACCAGAGAAGTTTCTTCTGTAGTTGAAGACAAATGT-AATGTTTTAA-TAAATTAGGCTGAT----------------------------------------------------------------------------------------------------------TAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29678214 122 + 173848474 ATTTGGATTTTGTAATTA--TA----AAAGCCCA--CTTTATGTAGAGAGAGTAAA-AAGAGTTTACCAGAGAAGTTTCTTCTGTAGTTGAAGACAAATGT-AATGTTTTAA-TAAATTAGGCTGAT----------------------------------------------------------------------------------------------------------TAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5468775 122 +   6154872 ATTTGGATTTTGTAATTA--TA----AAAGCCAA--CTTTATATAAAGAGAGTAAA-AAGAGTTTACCAGAGAAGTTTCTTCTGTAGTTGAAGACAAATGT-AATGTTTTAA-TAAATTAGGCTGAT----------------------------------------------------------------------------------------------------------TAAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74404158 126 + 122973662 ATCTGAATTTTTTTAATAGTTA----AAAGATGA--CTTTATCCAAAAAGGGATTA-ATGTATTTTCCATAAGAAGTTCTGTTCTAGGTAGAAAAAAATGTGAAGGTTTTGGTTAGGTTAAACTGAT----------------------------------------------------------------------------------------------------------TTTAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29640500 177 + 172585720 ATTTGGATTTTACAATTA--TA----AAAGCCAA--CTTCATGTAAAGAGAGTAAA-AAGAGTTTACCAGAGAAGTTTCTTCTGTAGTTGAAGACAAATGT-AATGTTTTAA-TAAATTAGGCTGATTAAAAAAGAATATGAAATTggcgtggtggctcatgcctgtaatcccagcacttAA---------------------------------------------------TGTAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29303043 122 - 170955103 ATTTGGATTTCACAATTA--TA----AAAGCCAA--CTTCATGTAAAGAGAGTAAA-AAGAGTTTGCCAGAGAAGTTTCTTCTGTAGTTGAAGACAAATGT-AATGTTTTAA-TAAATTAGGCTGAT----------------------------------------------------------------------------------------------------------TAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2311189 177 -   2996164 ATTTGGATTTCACAATTA--TA----AAAGCCAA--CTTCATGTAAAGAGAGTAAA-AAGAGTTTGCCAGAGAAGGTTCTTCTGTAGTTGAAGACAAATGT-AATGTTTTAA-TAAATTAGGCTGATTA---------------------------------------------------AAAAAGAATATGAAATTggcgtggtggctcatgcctgtaatcccagcacttAATGTAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       34714 122 +    766320 ATTTGGATTTTACAATTA--TA----AAAGCCAA--CTTCATGTAAAGAGAGTAAA-AAGAGTTTGCCAGAGAAGTTTCTTCTGTAGTTGAAGACAAATGT-AATGTTTTAA-TAAATTAGGCTGAT----------------------------------------------------------------------------------------------------------TAAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28587924 122 -  71996105 ATTTGGATTTTACAATTA--TA----AAAGCCAA--CTTCATGTAAAGAGAGTAAA-AAGAGTTTACCAGAGAAGTTTCTTCTGTAGTTGAAGACAAATGT-AATGTTTTAA-TAAATTAGGCTGAT----------------------------------------------------------------------------------------------------------TAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        6199 122 -    352859 ATTTGGATTTTACAATTA--TA----AAAGCCAA--CTTCATGTAAAGAGAGTAAA-AAGAGTTTGCCAGAGAAGTTTCTTCTGTAGTTGAAGACAAATGT-AATGTTTTAA-TAAATTAGGCTGAT----------------------------------------------------------------------------------------------------------TAAAAA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2161500 122 -   3067355 ATTTGGATTTTACAGTTA--TG----AAAGCCAA--CTTCATGTAAAGAGAGTAAG-AAGAGTTTACCAGAGAAGTTTTTTCTGTAGTTGAAGACAAATGT-AATGTTTTAA-TAAATTAGGCTGAT----------------------------------------------------------------------------------------------------------TAAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171600635 122 - 171630274 ATTTGGGTTTTGTAATTA--TA----AAAGCCAA--CTTTATGTAAAGAGAGGAAA-AAAAGTTTACCAGAGAAGTTTCTTCTCTAGTTGAAGACAAATGT-AAAGTTTTAA-TAAATTAGGCTGAT----------------------------------------------------------------------------------------------------------TAAAAA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1722059 127 -   2232465 aTTTGGATTTTTTAAAAA--TAATTGAAAGGCAA--ATTTATACAGATTGGGAAAAGAAGAGTTTACCATAAGAATGTCTGCTGTAGTTAAAGATAAATGT-AAAGTTCTTA-CAAATTAAGCTAAT----------------------------------------------------------------------------------------------------------TTAAAA
i otoGar3.GL873742         I 551 I 100
s dasNov3.JH570037            314109 122 -    859332 ATTTGTGCTTT-CAATAG--TT----AAAAATAGTTTTTTTTTTAATATAGGGAAA-ATCAATTAATGACAAGTGTTTCTGCTCTA-CTGAAGAAAAATGT-CATTTGTGAT-AAAGTTATTCTGCT----------------------------------------------------------------------------------------------------------TAAAAA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138974 64429 +  26524999 I

a score=25526.000000
s hg38.chr6_GL000254v2_alt    461465 9 +   4827813 AGAATATGA
s panTro5.chr6              29442534 9 + 175400573 AGAATATGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29678336 9 + 173848474 AGAATATGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5468897 9 +   6154872 AGAATATGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74404284 9 + 122973662 AGTATAGGA
i nomLeu3.chr1a            C 0 T 43244
s rheMac8.chr4              29640677 9 + 172585720 GTTTTAATA
i rheMac8.chr4             C 0 I 27
s macFas5.chr4              29303165 9 - 170955103 AGAATATGA
i macFas5.chr4             C 0 I 82
s macNem1.NW_012011356v1     2311366 9 -   2996164 GTTTTAATA
i macNem1.NW_012011356v1   C 0 I 27
s cerAty1.NW_012002711v1       34836 9 +    766320 AGAATATGA
i cerAty1.NW_012002711v1   C 0 I 82
s chlSab2.chr17             28588046 9 -  71996105 AGAATATGA
i chlSab2.chr17            C 0 I 82
s manLeu1.NW_012099655v1        6321 9 -    352859 AGAATATGA
i manLeu1.NW_012099655v1   C 0 I 82
s colAng1.NW_012115566v1     2161622 1 -   3067355 A--------
i colAng1.NW_012115566v1   C 0 I 8
s calJac3.chr4             171600757 9 - 171630274 AGAATATGA
i calJac3.chr4             C 0 C 0
s dasNov3.JH570037            314231 9 -    859332 AGAAAATGA
i dasNov3.JH570037         C 0 I 8
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1722186 100 -   2232465 I

a score=2466.000000
s hg38.chr6_GL000254v2_alt    461474 2 +   4827813 GC
s panTro5.chr6              29442543 2 + 175400573 GC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29678345 2 + 173848474 GC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5468906 2 +   6154872 GC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361049 2 + 122973662 AC
i nomLeu3.chr1a            T 43244 C 0
s rheMac8.chr4              29640713 2 + 172585720 GA
i rheMac8.chr4             I 27 C 0
s macFas5.chr4              29303256 2 - 170955103 GA
i macFas5.chr4             I 82 C 0
s macNem1.NW_012011356v1     2311402 2 -   2996164 GA
i macNem1.NW_012011356v1   I 27 C 0
s cerAty1.NW_012002711v1       34927 2 +    766320 GA
i cerAty1.NW_012002711v1   I 82 C 0
s chlSab2.chr17             28588137 2 -  71996105 GA
i chlSab2.chr17            I 82 C 0
s manLeu1.NW_012099655v1        6412 2 -    352859 GA
i manLeu1.NW_012099655v1   I 82 C 0
s colAng1.NW_012115566v1     2161631 2 -   3067355 AA
i colAng1.NW_012115566v1   I 8 C 0
s calJac3.chr4             171600766 2 - 171630274 AC
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            314240 8 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1722186 100 -   2232465 I

a score=1103231.000000
s hg38.chr6_GL000254v2_alt    461476 202 +   4827813 TTggtgtggtggctcatgcctgtaatcccagcgctttgggaggctgaggcgggtggatcacctgaggtcaggagtttgagaccagcccggccaacatggtgaaattccgtctctactaaaaatacaaaaaattagccaggcatggtggcagg-tcctgtaatcccagctacttgggaggctgaggcaggataatc-cttgaacc
s panTro5.chr6              29442545 202 + 175400573 TTggtgtggtggctcatgcctgtaatcccagcgctttgggaggacgaggtgggtggatcacctgaggtcaggagtttgagaccagcccggccaacatggtgaaattctgtctctactaaaaatacaaaaaattagccaggcgtggtggcagg-tcctgtaatcccagctacttgggaggctgaggcaggataatc-cttgaacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29678347 202 + 173848474 TTGCTgtggtggctcatgcctgtaatcccagcgctttgggaggacgaggcgggtggatcacctgaggtcaggagtttgagaccagcccggccaacatggtgaaattccgtctctactaaaaatacaaaaaattagccaggcgtggtggcagg-tcctgtaatcccagctacttgggaggctgaggcaggataatc-cttgaacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5468908 202 +   6154872 TTggtgtggtggctcatgcctgtaatcccagcgctttgggaggccgaggcaggtggatcacctgaggtcaggagtttgagaccagcccggccaacatggtgaaattccgtctctactaaaaatacaaaaaattagccgggcgtggtggcagg-tcctgtaatcccagctacttgggaggctgaggcaggataatc-cttgaacc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29640715 204 + 172585720 TTggcgtggtggctcatgcccgtaatcccagcactttgggaggccaaggcagatggctcacctgaggtcaggagtttgagaccagcctggccaacgtggtgaaatcccgtctctactaaaaatacgaaaaaatagccagtcgtggtgccgggttcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29303258 204 - 170955103 TTggcgtggtggctcatgcccgtaatcccagcactttgggaggccgaggcagatggctcacctgaggtcaggagttcgagaccagcctggccaacgtggtgaaatcccgtctctactaaaaatacgaaaaaataaccaggcgtggtgccgggttcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2311404 204 -   2996164 TTggcgtggtggctcatgcccgtaatcccagcactttgggaggccgaggcagatggctcacctgaggtcaggagttcgagaccagcctggccaacgtggtgaaatcccgtctctactaaaaatacgaaaaaatagccaggcgtggtgccgggttcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       34929 204 +    766320 TTggcgtggtggctcatgcctgtaatcccagcactttgggaggccgagacaggtggctcacctgaggtcaggagtttgagaccagcctggccaacgtggtgaaatcccgtctctactaaaaatacgaaaaaatagctgggcgtggtggtgggttcctgtaatcccagctacttgggaagctgaggcaggagaatcgcttgaacc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28588139 204 -  71996105 TTggcgtggtggctcatgcctgtaatcccagcactttgggaggccgagacaggtggctcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaatcccgtctctactaaaaatacgaaaaaatagccgggcgtagtggcaggttcctataatcccagctacttgggaggctgaggcaggagaatcgcttgaacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        6414 204 -    352859 TTggcgtggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggtggctcacctgaggtcaggagtttgagaccagcctggccaacgtggtgaaatcccgtctctacgaaaaatacgaaaaaatagctgggcgtggtggtgggttcctgtaatcccagctacttgggaagctgaggcaggagaatcgcttgaacc
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2161633 204 -   3067355 TTggcatggtggctcatgcctgtaatcccagcactgcgggaggccaaggcaggtggctcacctgatgtcaggagtttgagaccagcctggccaacgtggtggaatcctgtctctactaaaattacgaaaaaataaccgggcgtggtggcgggttcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171600768 204 - 171630274 TTggcatgatggcttacacctgtaatcccagcactttgggaggccgaggcaggtggatcacctgaggtcagaagtttgagaccaccctggccaacatgttgaaaccccatctctagtaaaaatacagaaaattagccgggtgtggtggcaggttcctgtagtcccagctactagggagactgaaacaggagaattgcttgaacc
i calJac3.chr4             C 0 I 4
e dasNov3.JH570037            314240   8 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1722186 100 -   2232465 I
e nomLeu3.chr1a             74361051   0 + 122973662 C

a score=453978.000000
s hg38.chr6_GL000254v2_alt    461678 100 +   4827813 tgggaggcagaggttgcagtgagccgagatcacgccattgtactacagcctgggcaatgggagtgaaac-tttgtctctt----aaaaaaaaaaCGAGTATGAAG
s panTro5.chr6              29442747 102 + 175400573 tgggaggcagaggttgcagtgagccgagatcacgccattgtactacagcctgggcaatgggagtgaaac-tttgtctctt--aaaaaaaaaaaaCAAGTATGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29678549 100 + 173848474 tgggaggcagaggttgcagtgagccgagatcacgccattgtactacagcctgggcaatgggagtgaaac-tttgtctctt----aaaaaaaaaaTGAGTATGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5469110  99 +   6154872 tgggaggcagaggttgcagtgagccgagatcacgccattgtactacagcctgggcaatgggagtgaaac---tgtctctt---aaaaaaaaaaaCGAGTATGAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29640919 100 + 172585720 ctggaggcagaggttgcagtgagctgagattacgccattatactacagcctgggcaacaggagtgaaac-tttgtctctt----aaacaaaaaaaGAGTATGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29303462 101 - 170955103 ctggaggcagaggttgcagtgagccgagattacgccattatactacagcctgggcaacaggagtgaaacgtttgtctctt----aaacaaaaaaaGAGTATGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2311608 100 -   2996164 ctggaggcagaggttgcagtgagccaagattacgccattatactacagcctgggcaacaggagtgaaac-tttgtctctt----aaacaaaaaaaGAGTATGAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       35133 100 +    766320 ctggaggcagaggttgcagtgagccgagattacaccattatactacagcctgggcaacaggagtgaaac-tttgtctctt----aaacaaaaaaaGAGTATGAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28588343 104 -  71996105 ctggaggcagaggttgcagtgagccgagattacgccattatactacagcctgggcaacaggagtgaaac-tttgtctcttaaaaaaaaaaaaaaaGAGTATGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        6618 100 -    352859 ctggaggcagaggttgcagtgagccgagattacaccattatactacagcctgggcaacaggagtgaaac-tttgtctctt----aaacaaaaaaaGAGTATGAAG
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2161837 104 -   3067355 ctggaggcagaggttgcagtgagccgagattgcgccattgtactacagcctgggcaacaggagtgaaac-tttgtctcttaaaaaaaaaaaaaaaGAGTATGAAG
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            314240   8 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1722186 100 -   2232465 I
e calJac3.chr4             171600972   4 - 171630274 I
e nomLeu3.chr1a             74361051   0 + 122973662 C

a score=20266.000000
s hg38.chr6_GL000254v2_alt    461778 6 +   4827813 AGTATA
s panTro5.chr6              29442849 6 + 175400573 AGTATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29678649 6 + 173848474 AGTATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5469209 6 +   6154872 AGTATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361051 5 + 122973662 -ACTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29641019 6 + 172585720 CATATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29303563 6 - 170955103 CATATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2311708 6 -   2996164 CATATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       35233 6 +    766320 CATATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28588447 6 -  71996105 CATATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        6718 6 -    352859 CATATA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2161941 6 -   3067355 CATACA
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            314240 8 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1722186 100 -   2232465 I
e calJac3.chr4             171600972 4 - 171630274 I

a score=519960.000000
s hg38.chr6_GL000254v2_alt    461784 93 +   4827813 AATTATTTTTCATGGAGTCCTGCCCTTAGAACAAGGCATTAAATCCTCTAAGTGTATAGGAAATTTGAGTTCAAAATAGATGCTTTGAAAAAA--------
s panTro5.chr6              29442855 93 + 175400573 AATTATTTTTCATGGAGTCCTGCCTTTAGAACAAGGCATTAAATCCTCTAAGTGTATAGGAAATTTGAGTTCAAAATAGATGCTTTGAAAAAA--------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29678655 93 + 173848474 AATTATTTTTCATGGAGTCCTGCCCTTAGAACAAGGCATTAAATCCTCTAAGTGTATAGGAAATTTGAGTTCAAAATAGATGCTTTGAAAAAA--------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5469215 93 +   6154872 AATTATTTTTCATGGAGTCCTGCCCTTAGAACAAGGCATTAAATCCTCTAAGTGTATAGGAAATTTAAGTTCAAAATAGATGCTTTGAAAAAA--------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361056 93 + 122973662 AATTACCTTTAATGGAGTGCAGCCTTGAGAAGAAGGTATCAAGTGGTCCAAGTCTATAGCAAATTTGAGTTTAAAATAGATACTTTCAGAAAA--------
i nomLeu3.chr1a            C 0 I 5
s rheMac8.chr4              29641025 93 + 172585720 AAGTATTTGTCATGGAGTCCTGCCCTTAGAGCAAGGCATCAAATCCTCTAAGTGTATAGGAAATTTGAATTCAAAATAGATGCTTTGAAAAAA--------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29303569 93 - 170955103 AAGTATTTGTCATGGAGTCCTGCCCTTAGAGCAAGGCATCAAATCCTCTAAGTGTATAGGAAATTTGAATTCAAAATAGATGCTTTGAAAAAA--------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2311714 93 -   2996164 AAGTATTTGTCATGGAGTCCTGCCCTTAGAGCAAGGCATCAAATCCTCTAAGTGTATAGGAAATTTGAATTCAAAATAGATGCTTTGAAAAAA--------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       35239 93 +    766320 CATTATTTGTCATGGAGTCCTGCCCTTAGAGCAAGGCATCAAATCCTCTAAGTGTATAGGAAATTTGAATTCAAAATAGATGCTTTGAAAAAA--------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28588453 93 -  71996105 AATTATTTGTCATGGAGTCCTGCCTTTAGAGCAAGGCATCAAATCCTCTAAGTGTATAGGAAATTTGAATTCAAAATAGATGCTTTGAAAAAA--------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        6724 93 -    352859 CATTATTTGTCATGGAGTCCTGCCGTTAGAGCAAGGCATCAAATCCTCTAAGTGTATAGGAAATTTGAATTCAAAATAGATGCTTTGAAAAAA--------
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2161947 93 -   3067355 AATTATTTGTCATGGAGTCCTGCCCTTAGAGCAAGGCATCAAATCCTCTAAGTGTATAGGAAATTTGAATTCAAAATAGATGCCTTGAAAAAA--------
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            314248 98 -    859332 AGTCAATTTTAGTGAACCCCAGCCTTGAGAACAAGGCATGAGGAGCTCTAAATCTTATGGCAAACTGAGTTTAA---GTACACTTTAGTGAAAGGATAGAA
i dasNov3.JH570037         I 8 C 0
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1722186 100 -   2232465 I
e calJac3.chr4             171600972  4 - 171630274 I

a score=19206.000000
s hg38.chr6_GL000254v2_alt    461877 3 +   4827813 AGG
s panTro5.chr6              29442948 3 + 175400573 AGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29678748 3 + 173848474 AGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5469308 3 +   6154872 AGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29641118 3 + 172585720 AGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29303662 3 - 170955103 AGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2311807 3 -   2996164 AGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       35332 3 +    766320 AGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28588546 3 -  71996105 AGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        6817 3 -    352859 AGG
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2162040 3 -   3067355 AGG
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037            314346 3 -    859332 AGG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1722186 100 -   2232465 I
e calJac3.chr4             171600972 4 - 171630274 I
e nomLeu3.chr1a             74361149 5 + 122973662 I

a score=3063538.000000
s hg38.chr6_GL000254v2_alt    461880 683 +   4827813 AATGTTTTTGAAAAATGCGAatttttacagatttacaatgtagaagtgcagttgtgttccatggatatattgcatagtggtgaagtctgatttttcaatgtatccatcatccaaataaa--atacattgtcctcagtaggtagtctttcatccctcaaccctttcccagcctcccaccttttggagtctccaatgcctatatttcactctatatccacatgtacccattgtttagctcccacttataattgataatatgtagcatttggctttttgtttctgagt----tctcttaagccaatggcctccagttacagtcacgttgctgcaaaagacatgatttcag---tctttttatggccaagtagtattctaaagtgtg--------------tatatatgtat---accacattttagaaatccaatagtccactgatggacactcaggctgattttattactttgctattgtggatagtgctgcgatatacatagacacataggtttctttttgatataatgatttctttacctttagcttgatatccagtaatgggattgctggatcgaatggtagctctatttttagttctttgaaaagtctccatactgttttccacagaggttgtactaatttacattcccaccaatagtgtatgtaatcc-ttttctctataccctcggcaaaac------------------tttttttttctgaa
s panTro5.chr6              29442951 682 + 175400573 AATGTTTTTGAAAAATGCGAatttttacagatttacaatgtagaagtgcagttgtgttccatggatatattgcatagtggtgaagtctgagctttcagtgtatccatcatccaaataaa--atacattgtcctcagtaggtagtctttcatccctcaaccctttcccaacctcccaccttttggagtctccaatgcctatgtttcactctatatccacatgtacccattgtttagctcccacttataattgataatatgtagcatttggctttttgtttctgagt----tctcttaagccaatggcctccagttacagtcacattgctgcaaaagacatgatttcag---tctttttatggccaagtagtattctaaagtgtg--------------tatatatgtat---accacattttagaaatccaatagtccactgatggacactcaggctgattttattactttgctattgtggatagtgctgcgatatacatagacacataggtttctttttgatataatgatttctttacctttagcttgatatccagtaatgggattgctggatcgaatggtagctctatttttagttctttgaaaagtctccatactgttttccacagaggttgtactaatttacattcccaccaatagtgtatgtaatcc-ttttctctataccctcggcaaaa-------------------tttttttttctgaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29678751 682 + 173848474 AATGTTTTTGAAAAATGTGAatttttacagatttacaatgtagaagtgcagttgtgttccatggatatattgcatagtggtgaagtctgagctttcagtgtatccatcatccaaataaaatatacattgtcctcagtaggtagtctttcatccctcaaccctttcccaacctcccaccttttggagtctccaatgcctatatttcactctatatccacatgtacccattgtttagctcccacttataattgataatatgtagcatttggctttttgtttctgagt----tctcttaagccaatggcctccagttacagtcacattgctgcaaaagacatgatttcag---tctttttatggccaagtagtattctaaagtgtg--------------tatatatgtat---accacattttagaaatccattagtccactgatggacactcaggctgattttattactttgctattgtggatagtgctgcgatatacatggacatataggtttctttttgatataatgatttctttacctttagcttgatatccagtaatgggattgctggatcgaatggtagctctatttttagttctttgaaaagtctccatactgttttccacagaggttgtactaatttacattcccaccaatagtgtatgtaatcc-ttttctctataccctcggcaaa---------------------ttttttttctgaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5469311 682 +   6154872 AATGTTTTTGAAAAATGCTAatttttacagatttacagtgtagaagtgcagttgtgttccatggatatattgcatagtggtgaagtctgagctttcagtgtatccatcatccaaataaa--atacatagtcctcagtaggtagtctttcatccctcaaccctttcccaacctcccaccttttggagtctccaatgcctatatttcactctgtatccacatgtacccattgtttagctcccacttataattgataatatgtagcatttggctttttgtttctgagt----tctcttaaggcaatggcctccagttacagtcacgttgctgcaaaagacatgatttcag---tctttttatggccaagtagtattctaaagtgtg--------------tatatatgtat---atcacattttagaaatccaatagtccactgatggacactcaggctgattttattactttgctattgtgggtagtgctgcgatatacatagacacataggtttctttttgatataatgatttctttacctttagcttgatatccagtaatgggattgctggatcgaatggtagctctatttttagttctttgaaaagtctccatactgttttccacagaggttgtactaatttacgttcccaccaatagtgtatgtaatcc-ttttctctatatcctcggcaaca-------------------tttttttttctgaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29641121 713 + 172585720 AATGTTTAAGGAAAATGTGAatttttacagatttagggtatagaagtgcagttgtgtttcatggatatattgcatagtggtgaagtgtgagctttcagtgtatccatcattcaaatagt--atacattgtcctcaataggtagtctttcatccctcagccctttcccaacctcccaccttttggagtctccaatgcctatatttcactctatatccacatgtacccattgtttagctcccacttataattgataatatctagcatttggctttctgtctttgagttatctcacttaagccaatggcctccagttacattcacattgctgaaaaagacatgatttcagacttttttttattgtcaaggagtattctaaagtgta--------tatatatatatatatataaaatcacattttagaaatccaatagtacattgatggacactcaggttgattctaatactttgctattgtgaatagtgctgcgatatacatagacatgcaggtttctttttgatataatgatttgtttacctttagtttgatatccagtaatgggattgctgaatcaaatggtagctctattttcagttatttgaaaagtctccatactgttttccatagagattgtactaatttacatccccaccaacattgtatgtaatcctttttctctataccctcagcaaaatttgttttt-----ttaaattttttttttattt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29303665 713 - 170955103 AATGTTTAAGGAAAATGTGAATTTttacagatttagggtatagaagtgcagttgtgtttcatggatatattgcatagtggtgaagtgtgagctttcagtgtatccatcattcaaatagt--atacattgtcctcaataggtagtctttcatccctcagccctttcccaacctcccaccttttggagtctccaatgcctatatttcactctatatccacatgtacccattgtttagctcccacttataattgataatatctagcatttggctttctgtctttgagttatctcacttaagccaatggcctccagttacattcacattgctgaaaaagacatgatttcagacttttttttattgtcaaggagtattctaaagtgta--------tatatatatatatatatataatcacattttagaaatccaatagtacattgatggacactcaggttgattctaatactttgctattgtgaatagtgctgcgatatacatagacatgcaggtttctttttgatataatgatttgtttacctttagtttgatatccagtaatgggattgctgaatcaaatggtagctctattttcagttatttgaaaagtctccatactgttttccatagagattgtactaatttacatccccaccaacattgtatgtaatcctttttctctataccctcagcaaaatttgttttt-----tttaattttttttttattt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2311810 709 -   2996164 AATGTTTAAGGAAAATGTGAatttttacagatttagggtatagaagtgcagttgtgtttcatggatatattgcatagtggtgaagtgtgaactttcagtgtatccatcattcaaatagt--atacattgtcctcaataggtagtctttcatccctcagccctttcccaacctcccaccttttggagtctccgatgcctatatttcactctatatccacatgtacccattgtttagctcccacttataattgataatatctagcatttggctttctgtctttgagttatctcacttaagccaatggcctccagttacattcacattgctgaaaaagacatgatttcagacttttttttattgtcaaggagtattctaaagtg------------tgtgtatatatatatataatcacattttagaaatccaatagtacattgatggacactcaggttgattctaatactttgctattgtgaatagtgctgcgatatacatagacatgcaggtttctttttgatataatgatttgtttacctttagtttgatatccagtaatgggattgctgaatcaaatggtagctctattttcagttatttgaaaagtctccatactgttttccatagagattgtactaatttacatccccaccaacatggtatgtaatcctttttctctataccctcagcaaaatttgttttt-----ttaaattttttttttattt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       35335 707 +    766320 AATGTTTAAGGAAAATGTGAAGttttacagatttagggcgtagaagtgcagttgtgtttcatggatatattgcatagtggtgaagtgtgagctttcaatgtatccatcattcaaatagt--atacattgtcctcaataggtagtctttcatccctcaaccctttcccaacctcccaccttttggagtctccaacgcctatatttcactctatatccacatgtacccattgtttagctcccacttataattgataatatctagaatttggctttctgtttttgagttatctcacttaagccaatggcctccagttacattcacattgctgtaaaagacatgatttcag---tctttttattgtcaaggagtattctaaagtatatgtatgtgtatatatatatatatataaaatcacattttagaaatccagtagtccattgatggacactcaagttgattctaatactttgctattgtgaatagtgctgtgatatacatagacgtgcaggtttctttttgatat-atgatttgtttacctttagtctgatatccagtaatgggattgctgaatcaaatggtagctctattttcagttatttgaaaagtctccatactgttttccatagagattgtactaatttacattcccaccaacattgtatgtaatcctttttctctataccctcggcaaaaattt---------------tttttttttgattt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28588549 709 -  71996105 AATGTTTAAGGAAAATGTGAATTTttacagatttagggtatagaagtgcagttgtgtttcatggatatagtgcatagtggtgaagtgtgagctttcagtgtatccatcattcaaatagt--atacattgtcctcaataggtagtctttcatccctcagccctttcccaacctcccaccttttggagtctccaatgccattatttcactctatatccacatgtacccattgtttagctcccacttataactgataatatctagcatttggctttctgtttttgagttatctcacttaagccaatggcctccagttacattcacattgctgtaaaagatatgatttcag---tctttttattgtcaaggagtattctaaagtata--------------tatatgtatataaaatcacattttagaaatccaatagtccattgatggacactcaagttgattctaatactttgctattgtgaatagtgctgcgatatacatagacgtgcaggtttctttttgatataatgatttgtttacctttagtttgatatccagtaatgggattgctgaatcaaatggtagctctattttcagttatttgaaaagtctccatactgttttccatagagattgtactaatttacattcccaccaacattgtatgtaatcctttttctctatatcctcggcaaaatttgtttttcttttttttttttttttttgattt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        6820 697 -    352859 AATGTTTAAGGAAAATGTGAAGttttacagatttagggtgtagaagtgcagttgtgtttcatggatatattgcatagtggtgaagtgtgagctttcagtgtatcagtcattcaaatagt--atacattgtcctcaataggtagtctttcatccctcaaccctttcccaacctcccaccttttggagtctccaatgcctatatttcactctatatccacatgtacccattgtttagctcccacttataattgataatatctagattttggttttctgtttttgagttatctcacttaaaccaatggcctccagttacattcacattgctgtaaaagacatgatttcag---tctttttattgtcaaggagtattctaaagtata----------tgtgtatatatacataaaatcacattttagaaatccaatagtccattgatggacactcaagttgattctaatactttgctattgtgaatagtgctgcgatatacatagacgtgcaggtttctttttgagataatgatttgtttacctttagtttgatatccagtaatgggattgctgaatcaaatggtagctctattttcaattatttgaaaagtctccacactgttttccatagagattgtactaatttacattcccaccaacattgtatgtaatcctttttctctataccctcggcaa----------------tttttttttttttttattt
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2162043 692 -   3067355 AATGTTTAAGGAAAATGTGAatttttacagatttagggtatagaagtgcagttgtgtttcatggatatattgcatagtggtgaaatgtgagctttcagtgtatccatcattcaaatagt--atacattatcctcaataggtagtctttcatccctcaacactttcccaacctcccaccttttggagtctccaatgcctatatttcactctatatccacatgtacccattgtttagctcccacttataactgataatatctagcatttggctttctgtttttgagttatctcactgaagccaatggcctccagttacattcacattgctgtaaaagacatgatttcag---tctttttattgtcaaggagtattctaaagtata------------------tatatatataatcacattttagaaatccaatagtccattgatgaacactcaagttgattctaatactttgctattgtgaatagtgctgcgatatacatagatgtgcaggtttctttctgatataatggtttgtttacctttagtttgatatccagtaatgggattgctgaatcaaatggtagctctattttcagttatttgaaaagtcttcatactgttttccatagagattgtactaatttacattcccaccaacattgtatgtaatcctttttctctataccctcggcaaaaa-------------ttttttttattttttattt
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            314349   0 -    859332 C
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1722186 100 -   2232465 I
e calJac3.chr4             171600972   4 - 171630274 I
e nomLeu3.chr1a             74361149   5 + 122973662 I

a score=625060.000000
s hg38.chr6_GL000254v2_alt    462563 116 +   4827813 ttt--aataatggccattttgactggcataacataatatctcactgtggttttaatttgcagttctcttatgattagcatttgttcatatgattattggccatttatatgtcatctt--t-
s panTro5.chr6              29443633 116 + 175400573 ttt--aataatggccattttgactggcataacataatatctcactgtgcttttaatttgcagttttcttatgattagcatttgttcatatgattattggccatttatatgtcatctt--t-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29679433 116 + 173848474 ttt--aataatggccattttgactggcataacataatatctcactgtgcttttaatttgcagttctcttatgattagcatttgttcatatgattattggccatttatatgtcatctt--t-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5469993 116 +   6154872 ttt--aataatggccattttgactggcataacataatatctcactgtggttttaatttgcaattctcttatgattagcatttgttcatatgattattggccatttatatgtcatctt--t-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29641834 117 + 172585720 ttt--aagaatggccattttgactggcataagataatatctcattgtggttttaatttgaagttctcttatgattagcatttgttcatatggttattggccatttacatctcatctg--ga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29304378 116 - 170955103 ttt--aagaatggccattttgactggcataagataatatctcattgtggttttaatttgaagttctcttatgattagcatttgttcatatggttattggccatttacatgtcatctg--g-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2312519 116 -   2996164 ttt--aagaatggccattttgactggcataagataatatctcattgtggttttaatttgaagttctcttatgattagcatttgttcatatggttattggccatttacatgtcatctg--g-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       36042 116 +    766320 ttt--aagaatggccattttgactggcataagataatatctcattgtggttttaatttgaagttctcttatgattagcgtttgttcatatggttattggccatttatatgtcatctt--a-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28589258 120 -  71996105 ttttaaagaatggccatttttactggcataagataatatctcattgtggttttaatttgaagttctcttatgattagcgtttgttcatatggttattggccatttatatgtcatcttaaa-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        7517 116 -    352859 ttt--aagaatggccattttgactggcataagataatatctcattgtggttttaatttgaagttctcttatgattagcgtttgttcatatggttattggccatttatatgtaatctt--a-
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2162735 116 -   3067355 ttt--aagaatggccattttgactggcataagataatatctcattgtggttttaatttgaagttctcttatgattagcatttgttcatatggttattggccatttatatgtcatctt--a-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171600976 116 - 171630274 ttt--aataatggccattttgactggtataaggtaatatcttattgtgggtttaatttgcagttctcttatgattagcatttgttcatatgtttattggccatttgtatgtaatctt--t-
i calJac3.chr4             I 4 C 0
e dasNov3.JH570037            314349   0 -    859332 C
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1722186 100 -   2232465 I
e nomLeu3.chr1a             74361149   5 + 122973662 I

a score=8953.000000
s hg38.chr6_GL000254v2_alt    462679 2 +   4827813 aa
s panTro5.chr6              29443749 2 + 175400573 aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29679549 2 + 173848474 aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5470109 2 +   6154872 aa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29641951 2 + 172585720 aa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29304494 2 - 170955103 aa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2312635 2 -   2996164 aa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       36158 2 +    766320 aa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28589378 2 -  71996105 aa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        7633 2 -    352859 aa
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2162851 2 -   3067355 aa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171601092 2 - 171630274 tg
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1722286 2 -   2232465 AG
i otoGar3.GL873742         I 100 C 0
e dasNov3.JH570037            314349 0 -    859332 C
e canFam3.chr35             26138974 64429 +  26524999 I
e nomLeu3.chr1a             74361149 5 + 122973662 I

a score=8281.000000
s hg38.chr6_GL000254v2_alt    462681 1 +   4827813 a
s panTro5.chr6              29443751 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29679551 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5470111 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361154 1 + 122973662 A
i nomLeu3.chr1a            I 5 I 43279
s rheMac8.chr4              29641953 1 + 172585720 a
i rheMac8.chr4             C 0 I 1
s macFas5.chr4              29304496 1 - 170955103 a
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1     2312637 1 -   2996164 a
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012002711v1       36160 1 +    766320 a
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17             28589380 1 -  71996105 a
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012099655v1        7635 1 -    352859 a
i manLeu1.NW_012099655v1   C 0 I 1
s colAng1.NW_012115566v1     2162853 1 -   3067355 a
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chr4             171601094 1 - 171630274 a
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1722288 1 -   2232465 A
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            314349 0 -    859332 C
e canFam3.chr35             26138974 64429 +  26524999 I

a score=8335.000000
s hg38.chr6_GL000254v2_alt    462682 5 +   4827813 a-aaa-A--
s panTro5.chr6              29443752 5 + 175400573 a-aaa-A--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29679552 5 + 173848474 a-aaa-A--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5470112 6 +   6154872 a-aaaCA--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74404434 5 + 122973662 A-AGG-A--
i nomLeu3.chr1a            I 43279 C 0
s rheMac8.chr4              29641955 5 + 172585720 A-AAA-A--
i rheMac8.chr4             I 1 C 0
s macFas5.chr4              29304498 5 - 170955103 a-gaa-a--
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1     2312639 5 -   2996164 a-AAA-A--
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1       36162 7 +    766320 a-aaA-AAC
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17             28589382 5 -  71996105 a-aaa-c--
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012099655v1        7637 5 -    352859 a-aaA-C--
i manLeu1.NW_012099655v1   I 1 C 0
s colAng1.NW_012115566v1     2162855 6 -   3067355 atAAA-A--
i colAng1.NW_012115566v1   I 1 C 0
s otoGar3.GL873742           1722289 5 -   2232465 A-GGA-A--
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            314349 0 -    859332 C
e canFam3.chr35             26138974 64429 +  26524999 I
e calJac3.chr4             171601095 0 - 171630274 C

a score=836035.000000
s hg38.chr6_GL000254v2_alt    462687 130 +   4827813 AAGAACACCTTAAAGTTCAGAATGAATTACATTCATGGCTAGGTTTAGAATATGGGTTCCGTTACTGGAAGATGTGTTGAAGTCTTTTAAAT-AGTGAGA-AGCTAATGCCAAAATAGCCT-TAAAACTATGT
s panTro5.chr6              29443757 130 + 175400573 AAGAACACCTTAAAGTTCAGAATGAATTACATTCATGGCTAGGTTTAGAATATGGGTTCCGTTACTGGAAGATGTGTTGAAGTCTTTTAAAT-AGTGAGA-AGCTAATGCCAAAATAGCCT-TAAAACTATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29679557 130 + 173848474 AAGAACACCTTAAAGTTCAGAATGAATTACATTCATGGCTAGGTTTAGAATATGGGTTCCGTTACTGGAAGATGTGTTGAAGTCTTTTAAAT-AGTGAGA-AGCTAATGCCAAAATAGCCT-TAAAACTATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5470118 130 +   6154872 AAAAACACCTTAAAGTTCAGAATGAATTACATTCATGGCTAGGTTTAGAATATGGGTTCTGTTACTGGAAGATGTGTTGAAGTCTTTTAAAT-AGTGAGA-AGCTAATGCCAAAATAGCCT-TAAAACTATGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74404439 115 + 122973662 AAAGGTATCTAAATGTTCATAATGACTT------GTGTCTGACATTAAAACAAGGATTCAGTCACTAGAAGATATGTCAAAGTCCATC-AGT-ACCAAAT-GGATAAAGCCGAAAT---------AACTATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29641960 130 + 172585720 AAGAACACCTTAAACTTCAGAATGAATTACATTCATGGCTAGGTTTAGAATATGGGTTCAGTTACTGGAAGAGGTGTTGAAGTCGTTTAAAT-AGTGAGA-AGCTGATGCCAAAATAGCTT-TAAAACTATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29304503 130 - 170955103 AAGAACACCTTAAACTTCAGAATGAATTACATTCATGGCTAGGTTTAGAATATGGGTTCAGTTACTGGAAGAGGTGTTGAAGTATTTTAAAT-AGTGAGA-AGCTGATGCCAAAATAGCTT-TAAAACTATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2312644 130 -   2996164 AAGAACACCTTAAACTTCAGAATGAATTACATTCATGGCTAGGTTTAGAATATGGGTTCAGTTACTGGAAGAGGTGTTGAAGTCTTTTAAAT-AGTGAGA-AGCTGATGCCAAAATAGCTT-TAAAACTATGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       36169 130 +    766320 AAAAACACCTTAAACTTCAGAATGAATTACATTCATGGCTAGGTTTAGAATATGGGTTCAGTTACTGGAAGAGGTGTTGAAGTCTTTTAAAT-AGTGAGA-AGCTGATGCCAAAATAGCTT-TAAAACTAAGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28589387 130 -  71996105 AAAAACACCTTAAATTTCAGAATGAATTCCATTCATGGCTAGGTTTAGAATATGGGTTCAGTTACTGGAAGAGGTGTTGAAGTCTTTTAAAT-AGTGAGA-AGCTGATGCCAAAATAGCTT-TAAAACTATGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        7642 130 -    352859 AAAAACACCTTAAACTTCAGAATGAATTACATTCATGGCTAGGTTTAGAATATGGGTTCAGTTACTGGAAGAGGTGTTGAAGTCTTTTAAAT-AGTGAGA-CGCTGATGCCAAAATAGCTT-TAAAACTATGT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2162861 130 -   3067355 AAGAATACCTTAAACTTCAGTATGAATTACATTCATGGCTAGGTTTAGAATACGGGTTCAGTTACTGGAAGAGGTGTTGAAGTCTTTTAAAT-AGTGAGA-AGCTGATGCCAAAATAGCCT-TAAAACTATGT
i colAng1.NW_012115566v1   C 0 T 43109
s calJac3.chr4             171601095 120 - 171630274 -aaaaC--------CTTCAGAATGAATTACATTCATGGCTAGGTTTAGAATATGG-TTCAGTCACTGGAAGACATGTTTGAGTCTTTTAAAT-AGTGAGA-ATATGATGCCAGAATAACCT-TAAAACTATAT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1722294 117 -   2232465 AATAATATTTACAAGGTAAGTTTGGATTA-------------GCCTAAGATGAGGGTTCAGTCACTAGAAGATGTGTTTAATTCTTTTCAAT-AGTAAGA-TGGTGATGTTAAAACAACTT-TATAAATATGT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            314349 128 -    859332 AAGAAAATCTCAATGTTTGCAATGACTTAGACTGATACCT----TTAGAATAAGAATTCTGTCACC-GAAGATATGTTCAAGTCCTTCTAGTCAGTCACATCGCTGATGTCAAGGCAACCTCTAGAAATATGT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138974 64429 +  26524999 I

a score=1554485.000000
s hg38.chr6_GL000254v2_alt    462817 287 +   4827813 CAGAAGAGGaaaaa---aaac---aacttaagacagc------------------aaaaaaaaaaaaaaaaaTTGGGTTTGGATGAGCATTTCAATCTTGAGAAAAACCTAACGT-GTTTGCAAAAGAAACTCAAGGATTGGATGACAAGT----T----TA-CCACTGGGCAA-AA-GGATATT-----TATATC---------------CTTGGATTAAGTGTTAAGTGATAA----GAAA--TCAAAT--CAAATAACTGAGTAAACAGTTGATGAATATTCCCTACTATACTTGGAGAAGATAAAATGGATG-CTGGGACTTAGAATTGGAT--------CAAATCAGAACA--AGTA--
s panTro5.chr6              29443887 288 + 175400573 CAGAAGAGG-aaaa---aaac---aacttaagacagc----------------aaaaaaaaaaaaaaaaaaaTTGGGTTTGGATGAGCATTTCAATCTTGAGAAAAACCTAACGT-GTTTGCAAAAGAAACTCAAGGACTGGATGACAAGT----T----TA-CCACTGGGCAA-AA-GGATATT-----TATATC---------------CTTGGATTAAGTGTTAAGTGATAA----GAAA--TCAAAT--CAAATAACTGAGTGAACAGTTGATGAATATTCCCTACTATACTTGGAGAAGATAAAATGGATG-CTGGGACTTAGAATTGGAT--------CAAATCAGAACA--AATA--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29679687 285 + 173848474 CAGAAGAGG-aaaa---aaac---aacttaagacag-------------------acaaaaaaaaaaaaaaaTTGGGTTTGGATGAGCATTTCAATCTTGAGAAAAACCTAACGT-GTTTGCAAAAGAAACTCAAGGATTGGATGACAAGT----T----TA-CCACTGGGCAA-AA-GGATATT-----TATATC---------------CTTGGATTAAGTGTTAAGTGATAA----GAAA--TCAAAT--CAAATAACTGAGTGAACAGTTGATGAATATTCCCTACTATACTTGGAGAAGATAAAATGGATG-CTGGGACTTAGAATTGGAT--------CAAATCAGAACA--AATA--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5470248 304 +   6154872 CAGAAGAGGaaaaa---aaac---aacttaagacagcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaTTGGGTTTGGATGAGCATTTCAATCTTGAGAAAAACCTAACGT-GTTTGCAAAAGAAACTCAAGGATTGGATGACAAGT----T----TA-CCAGTGGGCAA-AA--GATATT-----TATATC---------------CTTGGATTAAGTGTTAAGTGATAA----GAAA--TCAAAT--CAAATAACTGAGTGAACAGTTGATGAATATTCCCTACTATACTTGGAGAAGATAAAATGGATG-CTGGGACTTAGAATTGGAT--------CAAATCAGAACA--AGTA--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74404554 300 + 122973662 CACATGAAT-GAA-----------GACTTGCCATAGC----------------------------AATAAAGTAGAGTTTGGATGAAGATGTCCATCTTCGGGAAAACCCAAAATAGCTTTTACAAAAAACTGAAGGATGAAATAAAAGAT----T----AAGCCAACAGAAAT-AA-ACATATTGAAAATATTTCAATAAACAGAAATAACTTAGAGTGAGTCAGAACTGAGAACACCTAGA--ACAAGTTCCAAAGAAC---AAGAAAAGTCAGACCAAATCTCTGAC---ACTTGGAGAAGATAAAACAGATG-CAGTATGTTAGAG-TGGATGTAATAGACAAATCAGAACA--TGTA--
i nomLeu3.chr1a            C 0 T 43272
s rheMac8.chr4              29642090 273 + 172585720 TAGTAGAGG-AAAA---AAAC---AACTTAAGACAG-----------------------------AAAAAAAAAGGGTTTGGATGAGCATTTTAATCTTGAGAAAAGCCTAACCT-GTTTGCAAAAGAAACTCAAG--TTGGATGACAAGT----T----TA-CCACTGGGCAA-AA-AGATATT-----TATATC---------------CTTGGATTAAATGCTAAGTGATAA----GAAA--TCAAAC--CAAATAACTGGGTGAACAATTGATGAATATTCGCTACTATACTTGGAGAAGATAAAGTGGATG-CTGCGACTTAGAATTGGAT--------CAAATCAGAACG--AGTA--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29304633 274 - 170955103 TAGTAGAGG-AAAA---AAAC---AACTTAAGACAG----------------------------AAAAAAAAAAGGGTTTGGATGAGCATTTTAATCTTGAGAAAAACCTAACCT-GTTTGCAAAAGAAACTCAAG--TTGGATGACAAGT----T----TA-CCACTGGGCAA-AA-AGATATT-----TATATC---------------CTTGGATTAAATGCTAAGTGATAA----GAAA--TCAAAC--CAAATAACTGGGTGAACAATTGATGAATATTCGCTACTATACTTGGAGAAGATAAAGTGGATG-CTGCGACTTAGAATTGGAT--------CAAATCAGAACG--AGTA--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2312774 275 -   2996164 TAGTAGAGG-AAAA---AAAC---AACTTAAGACAGA---------------------------AAAAAAAAAAGGGTTTGGATGAGCATTTTAATCTTGAGAAAAACCTAACCT-GTTTGCAAAAGAAACTCAAG--TTGGATGACAAGT----T----TA-CCACTGGGCAA-AA-AGATATT-----TATATC---------------CTTGGATTAAATGCTAAGTGATAA----GAAA--TCAAAC--CAAATAACTGGGTGAACAATTGATGAATATTCGCTACTATACTTGGAGAAGATAAAGTGGATG-CTGCGACTTAGAATTGGAT--------CAAATCAGAACG--AGTA--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       36299 277 +    766320 TAGTAGAGG-AAAA---AAAC---AACTTAAGACAGG---------------------------AAAAAAAAAAGGGTTTGGATGAGCATTTTAATCTTGAGAAAAACCTAACCT-CTTTGCAAAAGAAACTCAAGGATTGGATGACAAGT----T----TA-CCACTGGGCAA-AA-AGATATT-----TATATC---------------CTTGGATTAAATGCTAAGTGATAA----GAAA--TCAAAC--CAAATAACTGGGTGACCAATTGATGGATATTCGCTACTATACTTGGAGAAGATAAACTGGATG-CTGTGACTTAGAATTGAAT--------TAAATCAGAACG--AGTA--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28589517 277 -  71996105 TAGTAGAGG-AAAA---AAAC---AACTTAAGATAGA---------------------------AAAAAAAAAAGGGTTTGGATGAGCATTTTAATCTTGAGAAAAACCTAACCT-GTTTGCAAAAGAAACTCAAGGATTGGATGACAAGT----T----TA-CCACTGGGCAA-AA-AGATATT-----TATATC---------------CTTGGATTAAATGTTAAGTGATAA----GAAA--TCAAAC--CAAATAACTGGGTGACCAATTGATGGATATTCACTACTATACTTGGAGAAGATAAAGTGGATG-CTGCGACTTAGAATTGAAT--------TAAATCAGAACG--AGTA--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        7772 277 -    352859 TAGTAGAGG-AAAA---AAAC---AACTTAAGACAGA---------------------------AAAAAAAAAAGGGTTTGGATGAGCATTTTAATCTTGAGAAAAACCTAACCT-CTTTGCAAAAGAAACTCAAGGATTGGATGACAAGT----T----TA-CCACTGGGCAA-AA-AGATATT-----TATATC---------------CTTGGATTAAATGCTAAGTGATAA----GAAA--TCAAAC--CAAATAACTGGGTGACCAATTGATGGATATTCGCTACTATACTTGGAGAAGATAAACTGGATG-CTGCGACTTAGAACTGGAT--------CAAATCAGAATG--AATA--
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2119882 275 -   3067355 ---CCAAAG-AGAA---AACCC-TCACTTAAGACAG----------------------------CAATAAAATAAGTTTTGGATGAGCATTTCAATCTTGAGACAAACCTAACCT-GTTTGCAAAATAAGCCCAAAGATTGGATGACAAGT----T----TA-CCACTGGGCAA-AA-AGATATT-----TATATC---------------TTTGGATTAAGTGCTAAGTGATAA----GAAA--TCAAAC--CAAATATTTGAGTGAACAATTAACGAATATTCCCTACTATACTTGGAGAAGATAAAATGGATG-CTGCGACTTAGAACTGGAT--------CAAATCAGAATG--AATA--
i colAng1.NW_012115566v1   T 43109 C 0
s calJac3.chr4             171601215 277 - 171630274 CAGAATAGA-AAAA---AAACTACTACTTACCACAGT----------------------------GATAAAATAGAGTTTAGATGAGCATTTCAATCTTGAGAAAAATCTAACCT-GTTTGCAAAATAATCTCACTGATTGCATGATGAGT----C----CA-CCACTGGGCAA-AA-CGATATT-----TATATC---------------CTTGGATTAACTGCTAAGTGATAA----GAAA--TCAGAC--CAAATATCTGAGTGAA-AATTGATGAATAGTC-CTACTATACTTGTAGAAGATAAAACGGATG-CTGGAACTTAGAATTGAAT--------CAAATCAGAATG--AGTA--
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1722411 282 -   2232465 CAGAAAAAT-ATAAGATAATT---AACTTA----------------------------------AGATAAAATGTGACTAAGATGTGCATTTCAAATTTTAAGATAGCCTAAACT-ACTTACAGAGGGCA---AAAAACTGGACAAAAAATTGTAT----TT-ATAGTGGATAAGAA-AGATAGT-----TGAATT---------------CTTGGAATAAGTGCTGAATCATAA----GAAAAGTTAGGC--CACATCTCTTAGTGAACAATAGATGAGTGTTTCCTACTGCACTTGGAGAGGATAATGTGGACA--TAGGACTTAGAACTGGAT----AAAATAAATCAGAATGTAAGTA--
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            314477 278 -    859332 --TGAAAAA-TAGA---AAAC---AATTTACAATGGC----------------------------AATAAAATAGGGTTAGGATGAAAATTTTAATCTTCAGGAAAA---------ATT---AAAAGAAGTTCAAAGAAGGGATGACAACT----TGTGCAA-ACAGTTTACAG-AACAGATATT-----TGAATT---------------TCTGGAATAAGCGTTAAATGATAA----GAAAAGTTAGAA--AAAAC-TCTGAGAGAA-AATTGATGGATTTTCG-TGCTACACTTGGAAAAGATGAGCTGAATGACATCGACATTGAATTGCATACAATGAAGAAATTAGAAGG--TGGGAA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138974 64429 +  26524999 I

a score=346420.000000
s hg38.chr6_GL000254v2_alt    463104 49 +   4827813 CCAATCAATGT--TCAGTCAAAGGTGATT-------GATTTGTTTATGCTTCTTAAAA
s panTro5.chr6              29444175 49 + 175400573 CCAATCAATGT--TCAGTCAAAGGTGATT-------GATTTGTTTATGCTTCTTAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29679972 49 + 173848474 CCAATCAATGT--TCAGTCAAAGGTGATT-------GATTTGTTTATGCTTCTTAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5470552 49 +   6154872 CCAATCAATGT--TCAGTCAAAGGTGATT-------GATTTGTTTATGCTTCTTAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361582 56 + 122973662 CCAGTCAATAA--TCAGTCAAAAGGGGCTTTGAGGAAATTGATTTATGCTTCTGTAAA
i nomLeu3.chr1a            T 43272 C 0
s rheMac8.chr4              29642363 55 + 172585720 CCAATCAATGT--TCAGTCAAAGGCGATT-GGAGGAAATTTGTTTATGCTTCTTAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29304907 55 - 170955103 CCAATCAATGT--TCAGTCAAAGGCGATT-GGAGGAAATTTGTTTATGCTTCTTAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2313049 55 -   2996164 CCAATCAATGT--TCAGTCAAAGGCGATT-GGAGGAAATTTGTTTATGCTTCTTAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       36576 55 +    766320 CCAATCAATGT--TCAGTCAAAGGCAATT-GGAGGAAATTTGTTTATGCTTCTTAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28589794 55 -  71996105 CCAATCAATGT--TCAGTCAAAGGCAATT-GGAGGAAATTTGTTTATGCTTCTTAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        8049 55 -    352859 CCAATCAACGT--TCAGTCGAAGGGGATT-GGAGGAAATTTGTTTATGCTTCTTAAAA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2120157 55 -   3067355 CCAATCAATGT--TCAGTCGAAGGGGATT-GGAGGAAATTTGTTTATGCTTCTTAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171601492 51 - 171630274 TCAATCAGTGT--TCAGTCAAAGAGGATT-GGAAAACATTTGTTTATGCTTCTt----
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1722693 55 -   2232465 CCAATCAATCA--TCAGTGAAAGGGGCAT-TGAAGGAATTGATTTATACCTCTTTAAA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            314755 58 -    859332 ACACTCAATATTATCAGTCAAAAGAGGCTTTAAGGAAATAGATTTATGTTTTTTAAAA
i dasNov3.JH570037         C 0 I 113
e canFam3.chr35             26138974 64429 +  26524999 I

a score=-2256.000000
s hg38.chr6_GL000254v2_alt    463153  7 +   4827813 TAC----tttt-
s panTro5.chr6              29444224  6 + 175400573 TAC-----ttt-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29680021  5 + 173848474 TAC------tt-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5470601  6 +   6154872 TAC-----TCt-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74361638  6 + 122973662 GAC-----TTT-
i nomLeu3.chr1a            C 0 I 428
s rheMac8.chr4              29642418  6 + 172585720 TAC-----ttt-
i rheMac8.chr4             C 0 I 2
s macFas5.chr4              29304962  6 - 170955103 TAC-----ttt-
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1     2313104  8 -   2996164 TAC---ttttt-
i macNem1.NW_012011356v1   C 0 I 2
s cerAty1.NW_012002711v1       36631  8 +    766320 TAC---ttttt-
i cerAty1.NW_012002711v1   C 0 I 2
s chlSab2.chr17             28589849 11 -  71996105 TACtttttttt-
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012099655v1        8104  7 -    352859 TAC----tttt-
i manLeu1.NW_012099655v1   C 0 I 2
s colAng1.NW_012115566v1     2120212  4 -   3067355 TGC-------t-
i colAng1.NW_012115566v1   C 0 I 2
s calJac3.chr4             171601543  3 - 171630274 --------ttt-
i calJac3.chr4             C 0 I 1
s otoGar3.GL873742           1722748  7 -   2232465 GAC-----TCTT
i otoGar3.GL873742         C 0 I 1
e dasNov3.JH570037            314813 113 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I

a score=30030.000000
s hg38.chr6_GL000254v2_alt    463160 5 +   4827813 ttttt
s panTro5.chr6              29444230 5 + 175400573 ttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29680026 5 + 173848474 ttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5470607 5 +   6154872 ttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29642426 5 + 172585720 ttttt
i rheMac8.chr4             I 2 C 0
s macFas5.chr4              29304970 5 - 170955103 ttttt
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1     2313114 5 -   2996164 ttttt
i macNem1.NW_012011356v1   I 2 C 0
s cerAty1.NW_012002711v1       36641 5 +    766320 ttttt
i cerAty1.NW_012002711v1   I 2 C 0
s chlSab2.chr17             28589862 5 -  71996105 ttttt
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012099655v1        8113 5 -    352859 ttttt
i manLeu1.NW_012099655v1   I 2 C 0
s colAng1.NW_012115566v1     2120218 5 -   3067355 ttttt
i colAng1.NW_012115566v1   I 2 C 0
s calJac3.chr4             171601547 5 - 171630274 ttttt
i calJac3.chr4             I 1 I 913
e dasNov3.JH570037            314813 113 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1722755 1 -   2232465 I
e nomLeu3.chr1a             74361644 428 + 122973662 I

a score=1652440.000000
s hg38.chr6_GL000254v2_alt    463165 306 +   4827813 tcttttttgtgatggagtcttgctctgtcgcccaggctggagtgcagtggtgcaatctcagctcattgcaacctccatctcccggtttcaagtgattctcctacctcag------------------------------------------------------------cgtcccgagtagctgggattacaagcatgcaccaccaattctg--gctaa--------------ttcttgtatctttagtagagacagtgtttcaccctgttgcccagtctggtctcaaactcctgacctcaagtgaccctcccactttggcctcccaaagtgctgggattacaggtgtgagccaccgtgcctggccTCTTACAAGACTCTTC
s panTro5.chr6              29444235 306 + 175400573 tcttttttgtgatggagtcttgctctgtcgcccaggctggagtgcagtggtgcgatctcagctcattgcaacctccatctcccggtttcaagtgattctcctacctcag------------------------------------------------------------cgtcccgagtagctgggattacaagcatgcaccaccaattctg--gctaa--------------ttcttgtatctttagtagagacagtgtttcaccctgttgcccagtctggtctcaaactcctgacctcaagtgaccctcccactttggcctcccaaagtgctaggattacaggtgtgagccaccgtgcctggccTCTTACAAGACTCTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29680031 306 + 173848474 tcttttttgtgatggagtcttgctctgttgcccaggctggagtgcagtggtgcgatctcagctcattgcaacctccatctcccggtttcaagtgattctcctacctcag------------------------------------------------------------cgtcccgagtagctgggattacaagcatgcaccaccaattctg--gctaa--------------ttcttgtatctttagtagagacagtgtttcaccctgttgcccagtctggtctcaaactcctgacctcaagtgaccctcccactttggcctcccaaagtgctaggattacaggtgtgagccaccgtgcctggccTCTTACAAGACTCTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5470612 306 +   6154872 tcttttttgtgatggagtcttgctctgtcacccaggctggagtgcagtggtgcaatctcagctcattgcaacctccatctcccggtttcaagtgattctcctacctcag------------------------------------------------------------catcccgagtagctgggattacaagcatgcaccaccaattctg--gctaa--------------ttcttgtatctttagtagagacagtgtttcaccctgttgcccagtctggtctcaaactcctgacctcaagtgaccctcccactttggcctcccaaagtgctgggattacaggtgtgagccaccgtgcctggccTCTTACAAGACTCTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29642431 306 + 172585720 tcttttttgagacagagtcttgctctgtcacccaggctggagtgcagtggtgcaatttcggctcacttcaacctccatctcccagtttcaagtgattctcctaccgcag------------------------------------------------------------catcccgagtagctgggattacaagcatgcaccaccaattctg--gctaa--------------ttcttgtatctttagtagagacagtgtttcaccctgttgcccagtctggtttcaaattcctgacctcaagtcaccctcctactttggcctcacaaagtgctgggaatacaggtgtgagccactgtgcctggccTCTTAAAAGACTCTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29304975 306 - 170955103 tcttttttgagacagagtcttgctctgtcacccaggctggagtgcagtggtgcaatttcggctcacttcaacctccatctcccagtttcaagtgattctcctaccgcag------------------------------------------------------------catcccgagtagctgggattacaagcatgcaccaccaattctg--gctaa--------------ttcttgtatctttagtagagacagtgtttcaccctgttgcccagtctggtttcaaattcctgacctcaagtcaccctcctactttggcctcccaaagtgctgggaatacaggtgtgagccactgtgcctggccTCTTAAAAGACTCTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2313119 366 -   2996164 tcttttttgagacagagtcttgctctgtcacccaggctggagtgcagtggtgcaatttcggctcacttcaacctccatctcccagtttcaagtgattctcctaccgcagcatcccgagtagctgggattacaagcatgcaccaccaattctggctaattcttgtatcttcatcccgagtagctgggattacaagcatgcaccaccaattctg--gctaa--------------ttcttgtatctttagtagagacagtgtttcaccctgttgcccagtctggtttcaaattcctgacctcaagtcaccctcctactttggcctcacaaagtgctgggaatacaggtgtgagccactgtgcctggccTCTTAAAAGACTCTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       36646 306 +    766320 tcttttctgagatggagtcttgctctgtcgcccaggctggagtgcagtgctgcaatcttggctcacttcaacctccatctcccagtttcaagtgattcttctacctcag------------------------------------------------------------catcccaagtagctgcgattacaagcatgcaccaccaattctg--gctaa--------------ttcttgtatctttggtagagacagtgtttcaccctgttgcccagtctggtttcaaattcctgacctcaagtcaccctcccactttggcctcccaaagtgctgggattacaggtgtgagccactgtgcctggccTCTTAAAAGACTCTTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28589867 306 -  71996105 tcttttctgagacggagtcttgctctgtcgcccaggctggagtgcagtgctgcaatcttggctcacttcaacctccatctcccagtttcaagtgattctcctacctcag------------------------------------------------------------catcccaagtagctgcgattacaagcatgtaccaccaattctg--gctaa--------------ttcttgtatctttagtagagacagtgtttcaccctgttgcccagtctggtttcaaattcctgacctcaagtcaccctcccactttggcctcccaaagtgctgggaatacaggtgtgagccactgtgcctggccTCTTAAAAGACTCTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        8118 306 -    352859 tcttttctgagacggagtcttgctctgtcgcccaggctggagtgcagtgctgcaatcttggctcacttcaacctccatctcccagtttcaagtgattcttctacctcag------------------------------------------------------------catcccaagtaactgcgattacaagcatgcaccaccaattctg--gctaa--------------ttcttgtatctttagtagagacagtgtttcaccctgttgcccagtctggtttcaaattcctgacctcaagtcaccctcccactttggcctcccaaagtgctgggattacaggtgtgagccactgtgcctggccTCTTAAAAGACTCTTC
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2120223 305 -   3067355 tcttttttgagatagagtcctgctctgttgcccaggctggagtgcagtggtgccatctcaact-actgcaacctccatctcctggtttcaagtggttctcttgcctcag------------------------------------------------------------catcctgagtagctgggattacaggcatgcaccaccacgtctg--gctaa--------------tttttgtgtttttagtagagacagtgtttccccatgttgcccaggctggtcttgaattcctgacctcaagtaatcctcccagtttggcctcccaaagtgctgggattacaggcatgagccactgtgcctggccTCTTAAAAGACTCTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171602465 320 - 171630274 TCttttttgagacggagtcttgctctgttgcctgggttggagtgcagtggtgtgatctcagctgactgaaacctccatcttacagtttcaagagactctcctccctcag------------------------------------------------------------cattctgagtagctgggattataggcatgcaccatcacttctgatgccaaaataatgtaaaatttttttgtatttttagtagagagagcgcttcaccatgttgcctaggctggtctcaagttcctgaccacaagtgatgctcccactttggcctcccaaagtgctggaattacaggtgtgagccactgtgcctggGCTCTTAAAAGA--CTTC
i calJac3.chr4             I 913 C 0
e dasNov3.JH570037            314813 113 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1722755   1 -   2232465 I
e nomLeu3.chr1a             74361644 428 + 122973662 I

a score=631793.000000
s hg38.chr6_GL000254v2_alt    463471 101 +   4827813 ATGGAGAGAGAAATAAAATAGAAATTAGGTTGTATGAATAACATTGAATCTTGAAGCCTTTAAAAATCACACTGAACATATTCGGCATGAATTAAGCAttt
s panTro5.chr6              29444541 101 + 175400573 ATGGAGAGAGAAATAAAATAGAAATTAGGTTATATGAATAACATTGAATCTTGAAGCCTTTAAAAATCACACTGAACATATTCAGCATGAATTAAGCATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29680337 101 + 173848474 ATGGAGAGAGAAATAAAATAGAAATTAGGTTATATGAATAACATTGAATCTTGAAGCCTTTAAAAATCACACTGAACATATTCGGCATGAATTAAGCATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5470918 101 +   6154872 ATGGAGAGAGAAATAAAATAGAAATTAGGTTATATGAATAACATTGAATCTTGAAGCCTTTAAAAATCACACTGAACATATTCGGCATGAATTAAGCAttt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29642737 101 + 172585720 ATGGAGAGAGAAATAAAATAGAAATTAGGTTATATGAATAACATTGAATCATGAAGCCTTTAAAAATCACACTGAACATATTCAGCGTGAATTAAGCAttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29305281 101 - 170955103 ATGGAGAGAGAAATAAAATAGAAATTAGGTTATATGAATAACATTGAATCATGAAGCCTTTAAAAATCACACTGAACATATTCAGCGTGAATTAAGCAttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2313485 101 -   2996164 ATGGAGAGAGAAATAAAATAGAAATTAGGTTATATGAATAATATTGAATCATGAAGCCTTTAAAAATCACACTGAACATATTCAGCGTGAATTAAGCAttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       36952 101 +    766320 ATGGAGAGAGAAATAAAATAGAAATTAGGTTATATGAATAACATTGAATCATGAAGCCTTTAAAAATCACACTGAACATATTCAGCGTGAATTAAACAttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28590173 101 -  71996105 ATGGAGAGAGAAATAAAATAGAAATTAGGTTATATGAATAACATTGAATCATGAAGCCTTTAAAAATCACACTGAACATATTCAGCGTGAATTAAGCAttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        8424 101 -    352859 ATGGAGAGAGAAATACAATAGAAATTAGGTTATATGAATAACATTGAATCATGAAGCCTTTAAAAATCACACTGAACATATTCAGCATGAATTAAGCAttt
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2120528 100 -   3067355 ATGGAGAGAGAAATAAAACATACATTAGGTTATATGAAAAACATTGAATCACGAA-CCCTTAAAAATCACACTGAACATATTCAGCATGAATTAAGCATTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171602785 101 - 171630274 ATGGAGAGAGAAATAAAATATGAATTAGGTTATATGAAGACCATTGAATTGTGAAACCTTTAAAAATCACACTGAACGTATTCAGCATGAATTAAGCATTT
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1722756  94 -   2232465 ATAAAGAGAGAAATAAAATATGAATTAGATTATTTGAGGAATGAT------TGGAGCCTTTAAAAATCACAATAAA-ATATTCAGAATGGATCAAGCATTT
i otoGar3.GL873742         I 1 C 0
e dasNov3.JH570037            314813 113 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e nomLeu3.chr1a             74361644 428 + 122973662 I

a score=1749.000000
s hg38.chr6_GL000254v2_alt    463572 1 +   4827813 t
s panTro5.chr6              29444642 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29680438 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5471019 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29642838 1 + 172585720 c
i rheMac8.chr4             C 0 I 2
s macFas5.chr4              29305382 1 - 170955103 c
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1     2313586 1 -   2996164 c
i macNem1.NW_012011356v1   C 0 I 2
s cerAty1.NW_012002711v1       37053 1 +    766320 c
i cerAty1.NW_012002711v1   C 0 I 2
s chlSab2.chr17             28590274 1 -  71996105 c
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012099655v1        8525 1 -    352859 c
i manLeu1.NW_012099655v1   C 0 I 2
s colAng1.NW_012115566v1     2120628 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 I 42863
s calJac3.chr4             171602886 1 - 171630274 T
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            314813 113 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1722850 0 -   2232465 C
e nomLeu3.chr1a             74361644 428 + 122973662 I

a score=-1923.000000
s hg38.chr6_GL000254v2_alt    463573 5 +   4827813 ---ttaaa
s panTro5.chr6              29444643 5 + 175400573 ---TAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29680439 5 + 173848474 ---TTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5471020 5 +   6154872 ---ttaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29642841 5 + 172585720 ttttt---
i rheMac8.chr4             I 2 C 0
s macFas5.chr4              29305385 5 - 170955103 ttttt---
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1     2313589 5 -   2996164 ttttt---
i macNem1.NW_012011356v1   I 2 C 0
s cerAty1.NW_012002711v1       37056 5 +    766320 ttttt---
i cerAty1.NW_012002711v1   I 2 C 0
s chlSab2.chr17             28590277 5 -  71996105 ttttt---
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012099655v1        8528 5 -    352859 ttttt---
i manLeu1.NW_012099655v1   I 2 C 0
e dasNov3.JH570037            314813 113 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1722850 0 -   2232465 C
e calJac3.chr4             171602887 0 - 171630274 C
e colAng1.NW_012115566v1     2120629 42863 -   3067355 I
e nomLeu3.chr1a             74361644 428 + 122973662 I

a score=2659752.000000
s hg38.chr6_GL000254v2_alt    463578 567 +   4827813 att-atactttaagttctggggtacatgtgcacaatgtgcaggtttgttacataggtatacatgtgccatgttgatttgctgcacccatcaactcgtcatttacattaggtatttctcctaatgctatccct-cccccagtgcccccc-accccccgacaggccctggtgtgtgatgttccccaccctgtgtccaagtgttctcattgttcaactcccacttataaatgagaacatgcagtgtttggttttctgtccttgtgatagtttgctgagaatgatggtttccagtttcatccatgtccctgcaaagggcatgaactcatcc-ttttctatggctgcatagcattccactgtgtatatgtgccacattttctttatccagtgtattattgatggacatttgggttggttccaagtctttgctattgtgagtgccacaataaacatacgtgttcatgtgtctttatagtataatgatttataatcctttgagtatatacccagtaatgggatcgctgggtcaaatggtatttctagttctagatccttgaggaatcgccacactgtc
s panTro5.chr6              29444648 567 + 175400573 att-atactttaagttctggggtacatgtgcacaatgtgcaggtttgttacataggtatacatgtgccatgttgatttgctgcacccatcaactcgtcatttacattaggtatttctcctaatgctatccct-cccccagtgcccccc-accccccgacaggccctggtgtgtgatgttccccaccctgtgtccaagtgttctcattgttcaactcccacttataaatgagaacatgcagtgtttggttttctgtccttgtgatagtttgctgagaatgatggtttccagtttcatccatgtccctgcaaagggcatgaactcatcc-ttttttatggctgcatagcattccacagtgtatatgtgccacattttctttatccagtgtattattgatggacatttgggttggttccaagtctttgctattgtgagtgccacaataaacatatgtgttcatgtgtctttatagtataatgatttataatcctttgagtatatacccagtaatgggatcgctgggtcaaatggtatttctagttctagatccttgaggaatcgccacactgtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29680444 568 + 173848474 ATTGatactttaagttctggggtacatgtgcacaatgtgcaggtttgttacataggtatacatgtgccatgttgatttgctgcacccatcaactcgtcatttacattaggtatttctcctaatgctatccct-cccccagtgcccccc-accccccgacaggccctggtgtgtgatgttccccaccctgtgtccaagtgttctcattgttcaactcccacttataaatgagaacatgcagtgtttggttttctgtccttgtgatagtttgctgagaatgatggtttccagtttcatccatgtccctgcaaagggcatgaactcatcc-ttttttatggctgcatagcattccacagtgtatatgtgccacattttctttatccagtgtattattgatggacatttgggttggttccaagtctttgctattgtgagtgccacaataaacatatgtgttcatgtgtctttatagtataatgatttataatcctttgagtatatacccagtaatgggatcgctgggtcaaatggtatttctagttctagatccttgaggaatcgccacactgtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5471025 565 +   6154872 att-atactttaagttctggggtacatgtgcacaatgtgcaggtttgtcacataggtatacatgtgccatgttgatttgctgcacccatcaactcgtcatttacattaggtatttctcctaatgctatccct--ccccagtg-ccccc-accccccgacaggccctggtgtgtgatgttccccaccctgtgtccaagtgttctcattgttcaactcccacttataaatgagaacatgcaatgtttggttttctgtccttgtgatagtttgctgagaatgatggtttccagtttcatccatgtccctgcaaagggcatgaactcatcc-ttttttatggctgcatagcattccgcagtgtatatgtgccacattttctttattcagtgtattattgacagacatttgggttggttccaagtctttgctattgtgagtgccacaataaacatacgtgttcatgtgtctttatagtataatgatttataatcctttgggtatataccgagtaatgggatcgctgggtcaaatggtatttctagttctagatccttgaggaatcgccacactgtc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29642846 566 + 172585720 att-atactttaagttctgggatacatgtgcacaacatgcaggtttgttacacaggtgtacatgtgccatgttgatttgttgcacccagaaactcatcatttacattaggtacatctcctaatggtatccct-ctcccagct-cccca-ccctgccaacaggccctggtgtatgatgttccccgccctgtggctaagtcttctcattactcaactcccacttataaatgagaacatgcagtgtttggttttctgtccttgtgatagtttgctgagaatgatggtttccagtttcatccatgtccctacaaaggacatgaactcatcc-ttttttatggctgcatagtattccatgctgtatatgtgccacattttctttatccagtgtattattgatggacatttgggtgggttccaagtctttgctattgtgagtgccacaataaacatatgtgtgcatgtgtctttacagtagcatgatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctagttctagatctttgatgaatcaccacactgtc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29305390 566 - 170955103 att-atactttaagttctgggatacatgtgcacaacatgcaggtttgttacacaggtgtacatgtgccatgttgatttgttgcacccagaaactcatcatttacattaggtacatctcctaatggtatccct-ctcccagct-cccca-ccctgccaacaggccctggtgtatgatgttccccgccctgtggctaagtcttctcattactcaactcccacttataaatgagaacatgcagtgtttggttttctgtccttgtgatagtttgctgagaatgatggtttccagtttcatccatgtccctacaaaggacatgaactcatcc-ttttttatggctgcatagtattccatgctgtatatgtgccacattttctttatccagtgtattattgatggacatttgggtgggttccaagtctttgctattgtgagtgccacaataaacatatgtgtgcatgtgtctttacagtagcatgatttataatcctttgggtatatacccagtaatgggattgctgagtcaaatggtatttctagttctagatctttgacgaatcaccacactgtc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2313594 566 -   2996164 att-atactttaagttctgggatacatgtgcacaacatgcaggtttgttacacaggtgtacatgtgccatgttgatttgttgcacccagaaactcatcatttacattaggtacatctcctaatggtatccct-ctcccagct-cccca-ccctgccaacaggccctggtgtatgatgttccccgccctgtggctaagtcttctcattactcgactcccacttataaatgagaacatgcagtgtttggttttctgtccttgtgatagtttgctgagaatgatggtttccagtttcatccatgtccctagaaaggacatgaactcatcc-ttttttatggctgcatagtattccatgctgtatatgtgccacattttctttatccagtgtattattgatggacatttgggtgggttccaagtctttgctattgtgagtgccacaataaacatatgtgtgcatgtgtctttatagtagcatgatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctagttctagatctttgacgaatcaccacactgtc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       37061 566 +    766320 att-acactttaagttctggggcacatgtgcacaacatgcaggtttgttacacaggtgtatatgtgccatgttgatttgttgcacccagaaacttgtcatttacattaggcatatctcctaatggtatccct-cccccagtt-ccccaccccccccaacaggccctagtgtgtgatgttccccaccctgtggccaagtcttctcattattcaactcccacttataaatgagaacatgcagtgtttggttttctgtccttgtgatagtttgctgagaatgatggtttccagtttcatccatgtccctacaaaggacatgaactcatcc-tttttta-ggctgcatagtattccatggtgtatatgtgccacattttctttatccagtgtattattgatggacatttgggttggttccaagtctttgctattgtgagtgtcacaataaacatatgtgtgcatgtgtctttatagtagcatgatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctagttctagatctttgaggaattaccacactgtc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28590282 565 -  71996105 att-atactttaagttctggggtacatgtgcacaacatgcaggtttgttacacaggtgtatatatgccatgttgatttgttgcacccagaaactcgtcacttacattaggtatatctcctaatggtatccct-cccccagct-cccca-cccccccaacaggccctagtgtgtgatgttccccaccctgtggccaagtcttctcattattcaactcccacttataaatgagaacatgcagtgtttggttttctgtccttgtgatagtttgctgagaatgatggtttccagtttcatccatgtccctacaaaggacatgaactcatcc-tttttta-ggctgcatagtattccatggtgtatatgtgccacattttctttatccagtgtattattgatggacatttgggttggttccaagtctttgctattgtgagtgccacaataaacatatgtgtgcatgtgtctttttagtagcatgatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctagttctagatctttgaggaattaccacactgtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        8533 565 -    352859 att-atactttaagttctggggtacatgtgcacaacatgcaggtttgttacacaggtgtatatgtgccatgttgatttgttgcacccagaaactcgtcatttacattaggtatatctcctaatggtatccct-cccccagct-cccca-ctcccccaacaggccctagtgtgtgatgttccccaccctgtggccaagtcttctcattattcaactcccacttataaatgagaacatgcagtgtttggttttctgtccttgtgatagtttgctgagaatgatggtttccagtttcatacatgtccctacaaaggacatgaactcatcc-tttttta-ggctgcatagtattccatggtgtatatgtgccacattttctttatccagtgtattattgatggacatttgggttggttccaagtctttgctattgtgagtgccacaataaacatatgtgtgcatgtatctttatagtagcatgatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctagttctagatctttgaggaattaccacactgtc
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2163492 568 -   3067355 att-atactttaagttctggggtacatgtgcacaacatgcaggtttgttacataggtgtacatgtgccatgttgattggttgcacccagaaactcgtcatttacattaggtatatctcctaatggtatccctccccccagct-ctcca-cccccacaacaggccctggtgtgtgatgttccccgccctgtggccaagtcttctcattattcaactcccacttacaaatgagaacatgcaatgtttggttttctgtccttgtgatagtttgctgagaatgatgatttccagtttcatctatgtccctacaaaggacatgaactcatcctttttttatggctgcatagtatttcatggtgtgtatgtgccacgttttctttatccagtgtattattgatggacatttgggttggttccaagtctttgctattgtgagtgccgcaataaacatacatgtgcatgtgtctttatagtagcatgatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctagttctagatccttgaggaatcaccacactgtc
i colAng1.NW_012115566v1   I 42863 C 0
e dasNov3.JH570037            314813 113 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1722850   0 -   2232465 C
e calJac3.chr4             171602887   0 - 171630274 C
e nomLeu3.chr1a             74361644 428 + 122973662 I

a score=52388.000000
s hg38.chr6_GL000254v2_alt    464145 10 +   4827813 tAAGCATTTG
s panTro5.chr6              29445215 10 + 175400573 tAAGCATTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29681012 10 + 173848474 tAAGCATTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5471590 10 +   6154872 tAAGCATTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74362072 10 + 122973662 TAAGCAATTT
i nomLeu3.chr1a            I 428 C 0
s rheMac8.chr4              29643412 10 + 172585720 tAAGCATTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29305956 10 - 170955103 tAAGCATTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2314160 10 -   2996164 tAAGCATTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       37627 10 +    766320 tAAGCATTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28590847 10 -  71996105 tAAGCATTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        9098 10 -    352859 tAAGCATTTT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2164060 10 -   3067355 tAAGCATTTT
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037            314813 113 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1722850  0 -   2232465 C
e calJac3.chr4             171602887  0 - 171630274 C

a score=4638.000000
s hg38.chr6_GL000254v2_alt    464155 1 +   4827813 T
s panTro5.chr6              29445225 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29681022 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5471600 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74362082 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29643422 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29305966 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2314170 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       37637 1 +    766320 T
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28590857 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        9108 1 -    352859 T
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2164070 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171602887 1 - 171630274 T
i calJac3.chr4             C 0 C 0
e dasNov3.JH570037            314813 113 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1722850 0 -   2232465 C

a score=30646.000000
s hg38.chr6_GL000254v2_alt    464156 6 +   4827813 CTAGTA
s panTro5.chr6              29445226 6 + 175400573 CTAGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29681023 6 + 173848474 CTAGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5471601 6 +   6154872 CTAGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74362083 6 + 122973662 ACCGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29643423 6 + 172585720 CTAGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29305967 6 - 170955103 CTAGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2314171 6 -   2996164 CTAGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       37638 6 +    766320 TTAGTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28590858 6 -  71996105 TTAGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        9109 6 -    352859 TTAGTA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2164071 6 -   3067355 CTAGTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171602888 6 - 171630274 CTACTA
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1722850 6 -   2232465 CTAGCT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            314813 113 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I

a score=286178.000000
s hg38.chr6_GL000254v2_alt    464162 41 +   4827813 AGAAAATGTAATTTGAAAGTAAGGTTCAGAACATTTAACCA-
s panTro5.chr6              29445232 41 + 175400573 AGAAAATGTAATTTCAAAGTAAGGTTCAGAACATTTAACCA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29681029 41 + 173848474 AGAAAATGTAATTTGAAAGTAAGGTTCAGAACATTTAACCA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5471607 41 +   6154872 AGAAAATGTAATTTGAAAGTAAGGTTCAGAACATTTAACCA-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74362089 41 + 122973662 AGGAAATTCAATTGAAAAGTGAGGTTCAAAACCTTCCTCAG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              29643429 41 + 172585720 AGAAAATGTAGTTTGAAAGTAAGGTTCAGAACATTTAGCCA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29305973 41 - 170955103 AGAAAATGTAGTTTGAAAGTAAGGTTCAGAACATTTAGCCA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2314177 41 -   2996164 AGAAAATGTAGTTTGAAAGTAAGGTTCAGAACATTTAGCCA-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       37644 41 +    766320 AGAAAATGTAGTTTGAAAGTAAGGTTCAGAACATTTAGCCA-
i cerAty1.NW_012002711v1   C 0 I 514
s chlSab2.chr17             28590864 41 -  71996105 AGAAAATGTAGTTTGAAAGTAAGGTTCAGAACATTTAGCCA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        9115 41 -    352859 AGAAAATGTAGTTTGAAAGTAAGGTTCAGAACATTTAGCCA-
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2164077 41 -   3067355 AGAAAATGTAGTTTGAAAGTAAGGTTCAGAACATTTAGCCA-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171602894 41 - 171630274 AAAAAATGTAGTTTGAAAGTAAGGTTCAGAACATTTAGCCA-
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1722856 41 -   2232465 AAAAAATGCAGTTTAAAAGTCAAATTCAAGAACTTCTGCAG-
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            314926 34 -    859332 AGAAAATGCAA--------TGAGGTTTCAAAATCTTCACCAG
i dasNov3.JH570037         I 113 C 0
e canFam3.chr35             26138974 64429 +  26524999 I

a score=770073.000000
s hg38.chr6_GL000254v2_alt    464203 119 +   4827813 AATGTTCAAGTAATTTCTAAACTGTATTGAGAAAATGGAATAAAGTTTCATAGATTATTTGTATTAGAAAAAGTTAATT----------AGAAAGTTTTCAA--------------------A---TGCACATTAAGTGATAGAT----------ACACACA
s panTro5.chr6              29445273 119 + 175400573 AATGTTCAAGTAATTTCTAAACTGTATTGAGAAAATGGAATAAAGTTTCATAGATTATTTGTATTAGAAAAAGTTAATT----------AGAAAGTTTTCAA--------------------A---TGCACATTAAGTGATAGAT----------ACACACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29681070 119 + 173848474 AATGTTCAAGTAATTTCTAAACTGTATTGAGAAAATGGAATAAAGTTTCATAGATTATTTGTATTAGAAAAAGTTAATT----------AGAAAGTTTTCAA--------------------A---TGCACATTAAGTAATAGAT----------ACACACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5471648 121 +   6154872 AATGTTCAAGTAATTTCTAAACTGTATTGAGAAAATGGAATAAAGTTTCATAGATTATTTGTATTAGAAAAAGTTAATT----------AGAAAGTTTTCAA--------------------A---TGCACATTAAGTGATAGAT--------ACACACACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74362130 141 + 122973662 AAAGTTAAAG----TTCTAAATTGTATTGAGAAAATACAATAAAGATTCACAGAATATTTATATTAGAATGAATTAATT----AAATACAGAACATTTTAAAGGCAACTAAAAAAATCAGCCA---TGCACATTAAGTAACAGAT----------ACCTACA
i nomLeu3.chr1a            C 0 I 2936
s rheMac8.chr4              29643470 117 + 172585720 AATGTTCAAGTAATTTCTAAACTGTATTGAGAAAATGGAATGGAGTTTCATAGATCATTTGTATTAGAAAAAGTTAATT----------GGAAAGTTTTCAA--------------------A---TACACATTAAGTGATAGAT------------ACACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29306014 117 - 170955103 AATGTTCAAGTAATTTCTAAACTGTATTGAGAAAATGGAATGGAGTTTCATAGATCATTTGTATTAGAAAAAGTTAATT----------GGAAAGTTTTCAA--------------------A---TACACATTAAGTGATAGAT------------ACACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2314218 117 -   2996164 AATGTTCAAGTAATTTCTAAACTGTATTGAGAAAATGGAATGGAGTTTCATAGATCATTTGTATTAGAAAAAGTTAATT----------GGAAAGTTTTCAA--------------------A---TACACATTAAGTGATAGAT------------ACACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       38199 127 +    766320 aatGTTCAAGTAATTTCTAAACTGTATTGAGAAAATGGAATAAAGTTTAATAGATCATTTGTATTAGAAAAAGTTAATT----------GGAAAGTTTTCAA--------------------A---TACACATTAAGTGATAGATacat--acacacacaca
i cerAty1.NW_012002711v1   I 514 C 0
s chlSab2.chr17             28590905 129 -  71996105 AATGTTCAAGTAATTTCTAAACTGTATTGAGAAAATGGAATAAAGTTTAATAGATCATTTGTATTAGAAAAAGTTAATT----------GGAAAGTTTTCAA--------------------A---TACACATTAAGTGATAGATacacacacacacacaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        9156 129 -    352859 AATGTTCAAGTAATTTCTAAACTGTATTGAGAAAATGGAATAAAGTTTAATAGATCATTTGTATTAGAAAAAGTTAATT----------GGAAAGTTTTCAA--------------------A---TACACATTAAGTGGTAGATACATacacacacacaca
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2164118 112 -   3067355 AATGTTCAAG-------TAAACTGTATTGAGAAAATGGAATAAAGTTCCATGGATCATTTGTATTAGAAAAAGTTAATT----------GGAAAGTTTTCAA--------------------A---TACACATTAAGTGATAGAC----------ACACACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171602935 112 - 171630274 AATGTTGAAGTAATCTCTAAACTGTATTGGGAAAATGGAAT--AGTTTCATAGATTATTTGTATTAGAAAAATTTAATT----------AGAAAAATTTCAA--------------------A---TACACATTTAGTGATAGAT----------AC-----
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1722897 127 -   2232465 AATGTTCAAGAAATTTTAAAATTTTATTGAGACAATAGAATAAA-TTTTATAGATTATTTGTATCAAAAGAAATTACTT----AAAGATAGAAAGTTTTCAT--------------------AATTTTTATATTAAGTGATAAGT----------CCTAACA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037            314960 144 -    859332 -----AAAATTAGTTTCTAATCTGTATTGAGAAAATTCTGTAAAACTTCACAGATTACTTATATCACAAGAAATTAATTACTTAAATATACAACATTTCCAAAGCAGATGAGAAGATCAGCCA---CGCACATGGAGTGATGCTT----------GCAGAAA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138974 64429 +  26524999 I

a score=25873.000000
s hg38.chr6_GL000254v2_alt    464322 11 +   4827813 CACACAA------------AACA
s panTro5.chr6              29445392 11 + 175400573 CACAAAA------------AACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29681189 11 + 173848474 CACAAAA------------AACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5471769 11 +   6154872 CACACAA------------AGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29643587 11 + 172585720 CACACAA------------AACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29306131 11 - 170955103 CACACAA------------AACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2314335 11 -   2996164 CACACAA------------AACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       38326 11 +    766320 cacacac------------aaca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28591034 11 -  71996105 cacacac------------aACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        9285 23 -    352859 cacacacacacacacacaAAACA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2164230 11 -   3067355 CACACAA------------AACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171603047  5 - 171630274 ---AGAA------------A---
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1723024  8 -   2232465 ---GAAA------------TACA
i otoGar3.GL873742         C 0 I 2
s dasNov3.JH570037            315104  6 -    859332 ----TAA------------GCC-
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138974 64429 +  26524999 I
e nomLeu3.chr1a             74362271 2936 + 122973662 I

a score=1239274.000000
s hg38.chr6_GL000254v2_alt    464333 188 +   4827813 AAAATTCTTAGAGAAAAAAATG--AAAAAACTGACCTGTTCTTATCAAAGACATG--ATTTCCCACATTTAAAAAACCTTGTAATAGTTGATTTACAGTTAA---GTTGA--CTGATGGAAATCTCACTGATTTAAGAAAATCTATATGAAAGTCCAGATACCAGTATTttttcctataaaaagctacgtagtcaat
s panTro5.chr6              29445403 188 + 175400573 AAAATTCTTAGAGAAAAAAATG--AAAAAACTGACCTGTTCTTATCAAAGACATG--ATTTCCCACATTTAAAAAACCTTGTAATAGTTGATTTACAGTTAA---GTTGA--CTGATGGAAATCTCATTGATTTAAGAAAATCTATATGAAAGTCCAGATACCAGTATTttttcctataaaaagctacgtagtcaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29681200 188 + 173848474 AAAATTCTTAGAGAAAAAAATG--AAAAAACTGACCTGTTCTTATCAAAGACGTG--ATTTCCCACATTTAAAAAACCTTGTAATAGTTGATTTACAGTTAA---GTTGA--CTGATGGAAATCTCATTGATTTAAGAAAATCTATATGAAAGTCCAGATACCAGTATTttttcctataaaaagctacgtagtcaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5471780 187 +   6154872 AAAATTCTTAGAGAAAAAAATG--AAAAAACTGACCTGTTCTTATCAAAGACATG--ATTTCCCACATTT-AAAAACCTTGTAATAGTTGATTTACAGTTAA---GTTGA--CTGATGGAAATCTCATTGATTTGAGAAAATCTATATGAAAGTCCAGATAACAGTATTttttcctataaaaagctacgtagtcaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74365207 189 + 122973662 AAAATTCTTAAAG-AAAAATTG--GAAAAAATTACTTGTTCCTATCAAAGACTCGCTATTTCCCATATTT-AAAAAGCTTATAGTTATTGACTTATAGTTCA---GTCAAACCTCAGTGAGGT-TCATTGAGTTAAGAAAATCCATATGAAAGACcagagatcagctaattttccccacaagagccagatagaaaat
i nomLeu3.chr1a            I 2936 I 17331
s rheMac8.chr4              29643598 188 + 172585720 AAAATTCTTAGAGAAAAAAACA--AAAAATCTGACCTATTCTTATCAAAGACATG--ATTTCCCACATTTAAAAAAGCTTGTAATAATTGATTTACAGTTAA---GTTGA--CTGAAGGAAATCTCACTGATTTAAGAAAATCTACATGAAAGTCAAGATACCAATATTttttcctataaaaaggtacatagtcaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29306142 188 - 170955103 AAAATTCTTAGAGAAAAAAACA--AAAAATCTGACCTATTCTTATCAAAGACATG--ATTTCCCACATTTAAAAAAGCTTGTAATAATTGATTTACAGTTAA---GTTGA--CTGAAGGAAATCTCACTGATTTAAGAAAATCTACATGAAAGTCAAGATACCAATATTTTTTcctataaaaaggtacatagtcaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2314346 188 -   2996164 AAAATTCTTAGAGAAAAAAACA--AAAAATCTGACCTATTCTTATCAAAGACATG--ATTTCCCACATTTAAAAAAGCTTGTAATAATTGATTTACAGTTAA---GTTGA--CTGAAGGAAATCTCACTGATTTAAGAAAATCTACATGAAAGTCAAGATACCAATATTttttcctataaaaaggtacatagtcaat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       38337 188 +    766320 AAAATTCTTAGAGAAAAAAACG--AAAAAACTGACCTATTCTTATCAAAGACATG--ATTTCCCACATTTAAAAAAGCTTGTAATAATTGATTTACAGTTAA---GTTGA--CCGATGGAAATCTCACTGATTTAAGAAAATCTATATGAAAGTCAAGATACCAGTATTttttcctgtaaaaagctacatagtcaat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28591045 190 -  71996105 AAAATTCTTAGAGAAAAAAACGAAAAAAAACTGACCTATTCTTATCAAAGACATG--ATTTCCCACATTTAAAAAAGCTTGTAATAATTGATTTACAGTTAA---GTTGA--CCGATGGAAATCTCACTGATTTAAGAAAATCTATATGAAAGTCAAGATACCAGTATTTTTTcctataaaaagctacatagtcaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        9308 185 -    352859 AAAATTCTTAGAGAAAAAAACG--AAAAAACTGACCTA---TTATCAAAGACATG--ATTTCCCACATTTAAAAAAGCTTGTAATAATTGATTTACAGTTAA---GTTGA--CCGATAGAAATCTCACTGATTTAAGAAAATCTATATGAAAGTCAAGATACCAGTATTttttcctataaaaagctacatagtcaat
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2164241 188 -   3067355 AAAATTCTTAGAGAAAAAAACG--AAAAAACTGACCTATTCTTATCAAAGACATG--ATTTTCCACATTTAAAAAAGCTTGTAATAATTGATTTACAGTTAA---GTTGA--CTGATGGAAATCTCACTGATTTAAGAAAACCTACATGAAAGCCAAGATAACAGTATTttttcctataaaaagctacatagtcagt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171603052 183 - 171630274 AAAATTCTTAGG--AAGAAATG--AAAGAACTGACTTGTTCTTACCAAAGCCATG--ATTTCCCTCA-TTAAAAAGGCTTGCAATAATTGATTGACAGTTAA---GTTGA--CTGAAGGAAATCTCATTGATTTAAG-AAATCTATATGAGAGTTCTGATGGCAGTatttttt-ctatgaaaagctacatagtctgt
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1723034 187 -   2232465 -AAATTCTTAGAGAAAAAATGA--AAAAAGATTATTTATGCCTAGCAAAGACATT--ATTTGCCACACTTAAAACAGTTTATGATAACTGATATATA--TAATTCATCGA--CTGAGAGAAATTTTAATGGACTAAGACAATCCATG-AAAAACTTAAACAtcagcaatttttcctatcaaaagccagatagtcaat
i otoGar3.GL873742         I 2 C 0
s dasNov3.JH570037            315110 176 -    859332 AAAATTCTTAGCG-AAAAATTG--GGAAGAATCACTTGTCCCTATCA----------ATTTCCCACG-AGAAAGTAGTTCATAATAATTGATTTA-ATTTCA---GTCTG--CTGAAAGACATGTCAAAGACTTAAGAAAATTTCATTAAGACcagagattagaaaacttttt-ttataaagggccagataataaat
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138974 64429 +  26524999 I

a score=93931.000000
s hg38.chr6_GL000254v2_alt    464521 13 +   4827813 -attaaggctttgt
s panTro5.chr6              29445591 13 + 175400573 -attaaggctttgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29681388 13 + 173848474 -attaaggctttgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5471967 13 +   6154872 -attaaggctttgt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29643786 13 + 172585720 -attaaggctttgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29306330 13 - 170955103 -attaaggctttgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2314534 13 -   2996164 -attaaggctttgt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       38525 13 +    766320 -attaaggctttgt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28591235 13 -  71996105 -attaaggctttgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        9493 13 -    352859 -attaaggctttgt
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2164429 13 -   3067355 -attaaggctttgt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171603235 13 - 171630274 -attaaggctttgt
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1723221 12 -   2232465 -att-agactttgt
i otoGar3.GL873742         C 0 T 52776
s dasNov3.JH570037            315286 14 -    859332 attttaggatttgt
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35             26138974 64429 +  26524999 I
e nomLeu3.chr1a             74365396 17331 + 122973662 I

a score=126862.000000
s hg38.chr6_GL000254v2_alt    464534 19 +   4827813 aaaccaagacacaaaactg
s panTro5.chr6              29445604 19 + 175400573 aaaccaagacacaaaactg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29681401 19 + 173848474 aaaccaagacacaaaactg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5471980 19 +   6154872 aaaccaagacacaaaactg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29643799 19 + 172585720 aaaccaagaaacaaaattg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29306343 19 - 170955103 aaaccaagaaacaaaattg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2314547 19 -   2996164 aaaccaagaaacaaaattg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       38538 19 +    766320 aaaccaagatacaaaattg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28591248 19 -  71996105 aaaccaagatacaaaattg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        9506 19 -    352859 aaaccaagatacaaaagtg
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2164442 19 -   3067355 aaaccaagatacaaaattg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171603248 19 - 171630274 aaaccaagatacaaaattg
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1670457 19 -   2232465 aagccaaggggcaaaattg
i otoGar3.GL873742         T 52776 C 0
s dasNov3.JH570037            315300 19 -    859332 tgaccaagaagaaaaaATg
i dasNov3.JH570037         C 0 I 37722
e canFam3.chr35             26138974 64429 +  26524999 I
e nomLeu3.chr1a             74365396 17331 + 122973662 I

a score=3737031.000000
s hg38.chr6_GL000254v2_alt    464553 665 +   4827813 gagtattatgaaagtacttatataacaaaattaaaaataaattctcacaatttttttttgttgctgaaa------caaaagcactgaaaataataaAtactagcaagaatgcaaagtga-gggaaactctctttgattgctggtagaaatgcaaagtggtgcaaccactttg----actatttggcaattt-ttataaagtttaatatagtcttgccatatgacttaacaatcacattcctaagtatttaccctagtgaattaa-aacttaggtccgtgtaaaaatctgcatgcaaatgtttatatcagtttcattcataattactccaaactgtaagcaacccatgcccttcaacaggggaaagataatct-tgggtatttccacacaatgatctatgattttgtggaagttgattgatcaatgaatactattgatcaatgggatggaatgagctactgatacatgcaacaacatgaatatatgttaagggtattttactaaatgaatgaagccagacttcaaagtctgaatattgtatgatttcattcataagacatctgg---ggaaaaaaaacccactgggatggaaacacatcagtggtatccagggcttagtgtaagggagattagtttattacaaagaagacacac-aggggaatttttaaatgatggagttgttt
s panTro5.chr6              29445623 666 + 175400573 gagtattatgaaagtacttatataacaaaattaaaaataaattctcacaatttttttttgttgctgaaa------caaaagcactgaaaataataaAtactagcaagaatgcaaagtga-gggaaactatctttgattgctggtagaaatgcaaagtggtgcaaccactttg----actatttggcaattt-ttataaagtttaatatagtcttgccatatgacttaacaatcacattcctaagtatttaccctagtgaattaa-aacttatgtccgtgtaaaaatctgcatgcaaatgtttatatcagtttcattcataattactcaaaactgtaagcaacccatgcccttcaacaggggaaagataatct-tgggtatttccacataatgatctatgattttgtggaagttgattgatcaatgaatactattgatcaatgggatggaatgagctactgatacatgcaacaacatgaatatatgttaagggtattttactaaatgaatgaagccagacttcaaagtctgaatattgtatgatttcattcataagacatctggc--aaaaaaaaaacccactgggatggaaacacatcagtggtatccagggcttagtgtaagggagattagtttattacaaagaagacacac-aggggaatttttaaatgatggagttgttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29681420 667 + 173848474 gagtattatgaaagtacttatataacaaaattaaaaataaattctcacaatttttttttgttgctgaaa------caaaagcactgaaaataataaAtactagcaagaatgcaaagtga-gggaaactatctttgattgctggtagaaatgcaaagtggtgcaaccactttg----actatttggcaattt-ttataaagtttaatatagtcttgccatatgacttaacaatcacattcctaagtatttaccctagtgaattaa-aacttatgtccgtgtaaaaatctgcatgcaaatgtttatatcagtttcattcataattactcaaaactgtaagcaacccatgcccttcaacaggggaaagataatct-tgggtatttccacacaatgatctatgattttgtggaagttgattgatcaatgaatactattgatcaatgggatggaatgagctactgatacatgcaacaacatgaatatatgttaagggtattttactaaatgaatgaagccagacttcaaagtctgaatattgtatgatttcattcataagacatctggcaaaaaaaaaaaacccactgggatggaaacacatcagtggtatcca-ggcttagtgtaagggagattagtttattacaaagaagacacac-aggggaatttttaaatgatggagttgttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5471999 664 +   6154872 gagtattatgaaagtacttatataacaaaattaaaaataaattctcacaa-ttttttttgtcgctgaaa------caaaagcactgaaaataataaAtactagcaagaatgcaaagtga-gggaaactctctttgattgctggtagaaatgcaaagtggtgcaaccactttg----actatttggcaattt-ttataaagtttaatatagtcttgccatatgacttaacaatcacattcctaagtatttaccctactgaattaa-aacttatgtccgtgtaaaaatctgcatgcaaatgtttatatcagtttcattcataattactcaaaactgtaagcaacccatgcccttcaacaggggaaagataatct-tgggtatttccacacaatgatctatgattttgtggaagttgattgatcaatgaatactattgatcaatgggatggaatgagctactgatacatgcaacaacatgaatatatgttaagggtattttactaaatgaatgaagccagacttcaaagtctgaatattgtatgatttcattcataagacatctgg---gaaaaaaaaacccactgggatggaaacacatcagtggtatccagggcttagtgtaagggagattagtttattacaaagaagacacac-aggggaatttttaaatgatggagttgttt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29643818 664 + 172585720 gagtattatgaaagtactcatataatgagattaaaaataaattctcacaa-ttttgttTGTCACTGAGA------caaaagcactgaaaataataaatgctagcaataatgcaaagtgaggggaaactctctttgattgctagtagaaatgcaaagtgacgcaaacac--tg----actatttggcaattt-ttatgaagtttaatatagtctttctatatgacttaacaatcacattcgtaagtatttaccccagtgaattaa-aacttttgtccatgtaaaaatctgcatgcaaatgtttatatcagttttattcataattactcaaaactgtaagccacccatgcccttcaacaggggaaagataatct-tgggtatttccacacaatgatctatgattgtgtggaaattgattgatcaatgaaaactattgaccggtgggatggaatgagctactgatacatgcaacaacatgaatatatgttaagtgtgttttactaaatagatgaagccagacttcaaagtctgaatattgtatgatttcattcataagacatctgg---gaaaaaaaaccacattgggatggaaacacactagtggtattcagagcttagtgtaggggagattagttgattacaaagaagacacacaagggaaatttttaaatgatgcatttgtct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29306362 663 - 170955103 gagtattatgaaagtactcatataatgagattaaaaataaattctcacaa-ttttgtttgtcactgaga------caaaagcactgaaaataataaatgctagcaataatgcaaagtgaggggaaactctctttgattgctagtagaaatgcaaagtgacgcaaacac--tg----actatttggcaattt-ttatgaagtttaatatagtctttctatatgacttaacaatcacattcgtaagtatttaccccggtgaattaa-aacttttgtccatgtaaaaatctgcatgcaaatgtttatatcagttttattcataattactcaaaactgtaagccacccat-cccttcaacaggggaaagataatct-tgggtatttccacacaatgatctatgattgtgtggaaattgattgatcaatgaaaactattgaccggtgggatggaatgagctactgatacatgcaacaacatgaatatatgttaagtgtgttttactaaatagatgaagccagacttcaaagtctgaatattgtatgatttcattcataagacatctgg---gaaaaaaaaccacattgggatggaaacacactagtggtattcagagcttagtgtaggggagattagttgattacaaagaagacacacaagggaaatttttaaatGATGCATTTGTCT
i macFas5.chr4             C 0 T 76475
s macNem1.NW_012011356v1     2314566 664 -   2996164 gagtattatgaaagtactcatataatgagattaaaaataaattctcacaa-ttttgttTGTCACTGAGA------caaaagcactgaaaataataaatggtagcaataatgcaaagtgaggggaaactctctttgattgctagtagaaatgcaaagtgacgcaaacac--tg----actatttggcaattt-ttatgaagtttaatatagtctttctatatgacttaacaatcacattcgtaagtatttaccccagtgaattaa-aacttttgtccatgtaaaaatctgcatgcaaatgtttatatcagttttattcataattactcaaaactgtaagccacccatgcccttcaacaggggaaagataatct-tgggtatttccacacaatgatctatgattgtgtggaaattgattgatcaatgaaaactattgaccggtgggatggaatgagctactgatacatgcaacaacatgaatatatgttaagtgtgttttactaaatagatgaagccagacttcaaagtctgaatattgtatgatttcattcataagacatctgg---gaaaaaaaaccccattgggatggaaacacactagtggtattcagagcttagtgtaggggagattagttgattacaaagaagacacacaagggaaatttttaaatgatgcatttgtct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       38557 661 +    766320 gagtattatgaaagtactcatataataagattaaaaataaattctcacaa-ttttgttTGTCACTGAGA------caaaagcactgaaaataatgaatgctagcaagaatgcaaagtgaggggaaactctctttgattgctggtagaaatgcaaagtgacgcaaacac--tg----actatttggcagttt-ttataaagtttaatatagtcttt-tatatgacttaacaatcacattcctaagtatttaccccagtgaattaa-aacttttgtccatgtaaaaatctgcatgcaaatgtttatatcagttttattcataattactcaaaactgtaagccacccatgcccttcaacaggggaaagataatct-tgggtatttccacacaatgatctatgattgtgtggaaattgattgatcaatgaatactatttaccagtgggatggaatgagctactgatacatgcaacaacatgaatatatgttaagtgtgttttactaaatagatgaagccagacttcaaagtctgaatattgtatgatttcattcataagacatctgg---ggaaaaaa--cccattgggatggaaacacaccagtggtattcagggcttagtgtaggggagattagttgattacaaagaagacacacaagggaaatttttaaatgatggagttgtct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28591267 658 -  71996105 gagtattttgaaagtactcgtataataagattaaaaataaattctcacaa-ttttGTTTGTCACTGAGA------CAAAagcactgaaaataatgaatgctagcaagaatgcaaaatcaggggaaactctctttgattgctgatagaaatgcaaagtgatgcaaacac--tg----actatttggcagttt-ttataaagtttaatatagtcttt-tatatgacttaacaatcacattcctaaatatttaccccagtgaattaa-aacttttgtccatgtaaaaatctgcatgcaaatgtttatatcagttttattcataattactcaaaactgtaagccacccatgcccttcaacacgggaaagataatct-tgggtatttccacacaatgatctatgattgtgtggaaattgattgatcaatgaaaactattgaccggtgggatggaatgagctactgatacatgcaacaacatgaatatatgttaagtgtgttttactaaatagatgaagccagacttcaaagtctgaatattgtatgatttcattcataagacatctgg---gaagaaaa--cccattgggatggaaacacaccagtggtattcagggcttagtgtaggggagattagttgattacaaagaagacacacaagggaaatttttaaatgatgga---gtct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1        9525 661 -    352859 gagtattatgaaagtactcatataataagattaaaaataaattctcacaa-ttttgttTGTCACTGAGA------Caaaagcactgaaaataatgaatgctagcaagaatgcaaagtgaggggaaactctctttgattgctggtagaaatgcaaagtgatgcaaacac--tg----actatttggcagttt-ttataaaatttaatatagtcttt-tatatgacttaacaatcacattcctaaatatttaccccagtgaattaa-aacttttgtccatgtaaaaatctgcatgcaaatgtttatatcagttttattcataattactcaaaactgtaagccacccatgcccttcaacaggggaaagataatct-tgggtatttccacacaatgatctatgattgtgtggaaattgattgatcaatgaatactattgaccagtgggatggaatgagctactgatacatgcaacaacatgaatatatgttaagtgtgttttactaaatagatgaagccagacttcaaagtctgaatattgtatgatttcattcataagacatctgg---gaaaaaaa--cccattgggatggaaacacaccagtggtattcagggcttagtgtaggggagattagttgattacaaagaagacacataagggaaatttttaaatgatggagttgtct
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2164461 657 -   3067355 gagtattatgaaagtactcatataataagattaaaaataaattctcacaa-ttttgttTGTCACTGAGA------caaaagcactgaaaataataaatgctagcaagaatgcaaagtgaggggaaactctctttgattgctggtagaaatgcaaagtgatgcaaacac--tg-------atttggcaatat-ttgtgaagtttaatatagtctttctacatgacttaacaatcacattcctaagtatttattccagtgaattaa-aacttttatccatgtaaaaatctgcatgcaaatgtttatatcagtttcattcataattactcaaaactgtaagccacctatgcccttcaacaggggaaagataatct-tggatatttccacacaatgatctatgattgtgtggaaattgattgatcaatgtatactattgaccagtgggatgaaatgagctactgctaaatgcaacaacatgaatatatgttaaatgtgttttactaaatagatgaagccagacttcaaagtctgaatattgtatgatttcattcataagacatctgg---gaaaaaa---cccattgggatggaaacacatcagtggtattcagggcttagtgtaggggaggttagttgattacaaagaagacacacaaggaaaa-ttttaaacgatggagttgtct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171603267 593 - 171630274 gagtattatgaaagtactcctataacaagattgaaaataaattctcacaa-aTCCCTTTGTTGCTATAA------caaacaaactgaaaatagtaaatgctagcaaaaatgcaaaatga-gggaaac--tctttgattgctggtagaaatgtaaattggtgcaatcactttg----accatttggcagttt-ttatcaagtttaatatagtcttgccatatgagttaacaatcacattcctaagtatttaccccagtgaattaa-aacttatgtccatgtaaaaatctgtatgcaaacggttatatcagttt-attcataattgctcaaaac--taaccaacccatgcccttcaacaggggaaagatgatct-tgggtattttcacactatgatctatgattgtgtggaaactgattgatcaataaatactattaatcaatgtgatggaatgagctactgatacatac-acaatatgaatatg-----------------------------------------------------gtattatttcattcataagacatctgg---aaaaaaa---cctgttgggatggaaagac---------atgcagggcttagtata-gggagattagttgattacaaagaagacactcaggggaaatttttaaataatggaattgttt
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1670476 575 -   2232465 gaatattaCAAAA-------------------------AAATTC-CATAA-AATATTTTGTTGCTTAAAACACAGaaaaaaccctgacaatagtaaacacttgcaagaatgtagagcaa-gtggagctctcttttattaccaatggaaatgcaa--tggtacaacaactttgaaagactgttggccaatttcttatag---ttaatataggcataccatatgacccgacaatcacatccctaggtatttatctcagtgaatcaataacttatgtccacacaaaaatctgcatgcaaat-tttaaagcagattgattcatattcactcaaaagtgaaagcaacacat---cttcaacaggagaaggataaactgggggtatatccacacaataa--------------------------------agtattatctatcgataggaaggaatgaactactgagacatacaacaacatggacgcatcttaaatgtattttgctaaatgaaagaattcagactccagaggctaaatattatatgattctattcataagacatctgg---aaaaggcaaaactgtaggga------------------------------------gggagattgattgattataaaggagacatacagggggaatttgaggatgatgaagatgttc
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            315319 37722 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e nomLeu3.chr1a             74365396 17331 + 122973662 I

a score=103565.000000
s hg38.chr6_GL000254v2_alt    465218 24 +   4827813 tgtatggtgctgcactagta-atac
s panTro5.chr6              29446289 24 + 175400573 tgtatggtgctgcactagta-atac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29682087 24 + 173848474 tgtatggtgctgcactagta-atac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5472663 24 +   6154872 tgtatggtgctgcactagta-gtac
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29230550 24 - 170955103 tgtatggtactgcactagta-atac
i macFas5.chr4             T 76475 C 0
s cerAty1.NW_012002711v1       39218 24 +    766320 tgtatggtgctgcactagta-atac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28591925 24 -  71996105 tgtatggtgctgcactagta-atac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1       10186 24 -    352859 tgtatGGTGCTGCACTAGTA-ATAC
i manLeu1.NW_012099655v1   C 0 I 39054
s colAng1.NW_012115566v1     2165118 24 -   3067355 tgtatggtgctgccctagta-atac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171603860 24 - 171630274 tatacagtgctgcactaata-atac
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1671051 25 -   2232465 tgtattgtgctgcactggtgcggac
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            315319 37722 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e macNem1.NW_012011356v1     2315230  0 -   2996164 C
e rheMac8.chr4              29644482  0 + 172585720 C
e nomLeu3.chr1a             74365396 17331 + 122973662 I

a score=24108.000000
s hg38.chr6_GL000254v2_alt    465242 9 +   4827813 acaagtcca
s panTro5.chr6              29446313 9 + 175400573 acaagtcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29682111 9 + 173848474 acaagtcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5472687 9 +   6154872 acaagtcta
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29230574 9 - 170955103 acaagtcta
i macFas5.chr4             C 0 I 76442
s cerAty1.NW_012002711v1       39242 9 +    766320 ccaagtcta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28591949 9 -  71996105 ccaagtcta
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     2165142 9 -   3067355 ccaagtcta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171603884 7 - 171630274 --atgtcca
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1671076 9 -   2232465 atgactcta
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037            315319 37722 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e manLeu1.NW_012099655v1       10210 39054 -    352859 I
e macNem1.NW_012011356v1     2315230 0 -   2996164 C
e rheMac8.chr4              29644482 0 + 172585720 C
e nomLeu3.chr1a             74365396 17331 + 122973662 I

a score=1221812.000000
s hg38.chr6_GL000254v2_alt    465251 252 +   4827813 tgatttatt----aatccctaagta-gtgtatcacaaaattgcactcaaatgcatgcaaataaacaagcaaaaat-atcacc-------aagatgtgggaagatcctagaatggtat---gacagtggcaaatcaacctcacttta-tataaatatgtaagctaacaacactgaaaagggtagagaagaagtaaaaagtggcctaacttaccttg-agaaataatgttttgattaaaaaatgtcagactgtagacaaaagtaactttgca
s panTro5.chr6              29446322 252 + 175400573 tgatttatt----aatccctaagta-gtgtatcacaaaattgcactcaaatgcatgcaaataaacaagcaaaaat-atcacc-------aagatgtgggaagatcctagaatggtat---gacagtggcaaatcaacctcacttta-tataaatatgtaagctaacaacactgaaaagggtagagaagaagtaaaaagtgacctaacttaccttg-agaaataatgttttgattaaaaaatgtcagactgtagacaaaagtaactttgca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29682120 252 + 173848474 tgatttatt----aatccctaagta-gtgtatcacaaaattgcactcaaatgcatgcaaataaacaagcaaaaat-atcacc-------aagatgtgggaagatcctagaatggtat---gacagtggcaaatcaacctcacttta-tataaatatgtaagctaacaacactgaaaagggtagagaagaagtaaaaagtgacctaacttaccttg-agaaataatgttttgattaaaaaatgtcagactgtagacaaaagtaactttgca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5472696 252 +   6154872 tgatttatt----aatccctaagta-gtgtatcacaaaattgcactcaaatgcatgcaaataaacgagcaaaaat-atcacc-------aagatgtggggagatcctagaatggtat---gacagtggcaaatcaacctcacttta-tataaatatgtaagctaacaacactgaaaagggtagagaagaagtaaaaagtgacctaacttaccttg-agaaataatgttttgattaaaaaatgtcagactgtagacaaaagtaactttgca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29644482 250 + 172585720 tgatttatt----aatccccaagta-gtgtatcacaaaactgcactcaaatgcatgcaaataaacaagtaaaaat-atcacc-------aagatgtgggaagat--tagaatggtat---gacggtaacaaatcaacctcacttta-tataaatatataagctaacaacactgaaaagggtagagaagaagtaaaaagtgacctgacttactttg-agaaataatattttggttaaaaaatatcagactatagacaaaagtaactgtgca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29307025 250 - 170955103 TGATTTATT----AATCCCCAAGTA-GTGTATCACAaaactgcactcaaatgcatgcaaataaacaagtaaaaat-atcacc-------aagatgtgggaagat--tagaatggtat---gacggtaacaaatcaacctcacttta-tataaatatataagctaacaacactgaaaagggtagagaagaagtaaaaagtgacctgacttactttg-agaaataatattttggttaaaaaatatcagactatagacaaaagtaactgtgca
i macFas5.chr4             I 76442 C 0
s macNem1.NW_012011356v1     2315230 250 -   2996164 tgatttatt----aatccctaagta-gtgtatcacaaaactgcactcaaatgcatgcaaataaacaagtaaaaat-atcacc-------aagatgtgggaagat--tagaatggtat---gacggtaacaaatcaacctcacttta-tataaatatataagctaacaacactgaaaagggtagagaagaagtaaaaagtgacctgacttactttg-agaaataatattttggttaaaaaatatcagactatagacaaaagtaactgtgca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       39251 249 +    766320 tgatttatt----aatctccaagta-gtgtatcacaaaactgcactcaaatgcatgcaaataaacaagtaaaaat-atcacc-------aagatgtgggaagattctagaatggtat---gacggtgacaaatcaacctcacttta-tataaatatataagctaacaacactgaaaagggtagagaagaagtaaaaagtgacctgacttacttcg-aga---aatattttggttaaaaaatatcagactatagacaaaagtaaccatgcg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28591958 252 -  71996105 tgatttatt----aacctccaagta-gtgtatcacaaaactgcactcaaatgcatgcaaataaacaagtaaaaat-atcacc-------aagatgtgggaaggttctagaatggtat---gacggtgacaaatcatcctcacttta-tataaatatataagctaacaacactgaaaagggtagagaagaagtaaaaagtgacctaacttactttg-agaaataatactttggttaaaaaatgtcagactatagacaaaagtaaccatgca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     2165151 252 -   3067355 ttatttatt----aatccccaagta-gtgtatcacaaaactgcactcaaatgcatgcaaataaacaagtaaaaat-atcatc-------aagatgtgggaagattctagaatggtaa---gacggtgacaaatcaacctcactttg-tataaatctataagctaacaacactgaaaagggtagagaagaagtaaagagtgacctaacttacttcg-agaaataatattttggttaaaaaatgtcagactatagacaaaagtaactgtgca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171603891 255 - 171630274 tgatttatt----aatcccaaagaa-gtctatcacaaaattgcatgcaaatgtatgcaaataaacaagcaaaaat-atctcc-------aagacgtggggatatcctagaatggtatgcagacaatgacaaatcaacctcacttta-tagaaatacgtaagctaataacactgaaaagggtagagaagaagtaaatactgatttcacttactttg-agaaatactgttttgatttaaaagtgtcaggttaaagacaaaagtaactgtgca
i calJac3.chr4             C 0 C 0
s otoGar3.GL873742           1671085 266 -   2232465 tggatttttaaaaaacccataggcacgtacatcccccaaatgaattt-aatgtatgcaaacaaa--agcaaaaatcaacactatcaggaaagatgccagaggattctaagatggaatgcagacaatg-caaatgaatctcactgtattataaatgtaaaacataaccacattgagaaaggtgaggaaaaaataagtactaattgaagaaactttgcaaaaatggtgtttggattgaaaaatgtaagactaaagacagaagTCACTATGTA
i otoGar3.GL873742         C 0 I 7131
e dasNov3.JH570037            315319 37722 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e manLeu1.NW_012099655v1       10210 39054 -    352859 I
e nomLeu3.chr1a             74365396 17331 + 122973662 I

a score=6396666.000000
s hg38.chr6_GL000254v2_alt    465503 1502 +   4827813 taaatatggtattctgaatagtaaatttgtttctcatgcgggttcagctaattctgtaattgcttcacatgcatacca--gttgaacaaaaatattaaaatatgaacagtggcatccaggtttctccctgttggtaagagaagttacagagaagcaagaaaggaaggccagaatgaccattagggactgtgttagagtcagagttatcactatgacctcatgtttaaacacaagcccaaat----gcacatgg--acacaca--cagatggacaaataaggaaacaacgacagatatgtgtgtattcagggcttactgtgtagacacacattacctagccctttctgctgaaatagcctagaaacaatgttaccctcatagcaatgtgcacatgtcacactcagataatgttttctaatgccattttccagtgaaaagaaacagagatcgttggagaaatgtctgatta------------taagatatttctaagcctggtgaagaaatatataagagaagcct---ggagaagaaccagtaataccagaaatcagggaggggccctgaagagaaaaggataacaaaaggatgaagacctgtccaagggacccagcagctaacttgaaagagctctcaatgggtaaagctggagcaatttcaacaacaaaataaataacatatcactggattataacctgaa------------------gtataaaacgtatgagtccatactcttataaataaatgattgaataaatacataaat-gagaagaagggagaaatcttccttactagtctattaatagtccccactttcagatgtggagctcatgatctcctttgttaagtgtaggctggactcagtgactgtcttccaaggaatagagtatggacaggtaacaattgtaagtttcagttttatttagtgaaaacactaccttaaccaagtgattaaagtcagcaccatcagtgatgccatgtagatattatgtaacccctgctctgatgggataaaaagggcactttacctctgtggtctcctctgcaaaaattcaaaggcccagtgtaattgatggcagctgaaacccatctggactgt----------gatgccggctgtagtaggggagatgcaggtgtggctgtgcgctccgtggagccc-ctggagccgggaacaggcggaagccccaaccccttatgagttgacagggcaagagccttgtgctccccaggctcagctgcagttgcccagcagcggctgtgga-caggacatccctgtgcgcttggggttcaggagcaggcagaagccccaccctccctggtgcagctgcagctgctcaagctgtgtctacaaacctgggcatccctgtgttcttgggtgccagga----gtaagagccctgccctcctgggcgcagctgcagatgcccaagctgcagcggcagacccgggcatctctgcactcttgggggcctgggaaagccctttttgccc--ccgcaggcttggaggtgcctgctcctggtgtctgatctctccctgctcctgg
s panTro5.chr6              29446574 1502 + 175400573 taaatatggtattctgaatagtaaatttgtttctcatgcgggttcagctaattctgtaattgcttcacatgcatacca--gttgaacaaaaatattaaaatatgaacagtggcatccaggtttctccctgttggtaagagaagttacagagaagcaagaaaggaaggccagaatgaccattagggactgtgttagagtcagagttatcactatgacctcatgtttaaacacaagcccaaat----gcacatgg--acacaca--cagatggacaaataaggaaacaacgacagatatgtgtgtattcagggcttactgtgtagacacacattacctagccctttctgctgaaatagcctagaaacaatgttaccctcatagcaatgtgcacatgtcacactcagataatgttttctaatgccattttccagtgaaaagaaacagagatcgttggagaaatgtctgatta------------taagatatttctaagcctggtgaagaaatatataagagaagcct---ggagaagaaccagtaataccagaaatcagggaggggccctgaagagaaaaggataacaaaaggatgaagacctgtccaagggacccagcagctaaattgaaagagctctcaatgggtaaagctggagcaatttcaacaacaaaataaataacatatcactggattataacctgaa------------------gtataaaacgtatgagtccatactcttataaataaatgattgaataaatacataaat-gagaagaagggagaaatcttccttactagtctattaatagtccccactttcagatgtggagctcatgatctccttcgttaagtgtaggctggactcagtgactgtcttccaaggaatagagtatggacaggtaacaattgtaagtttcagttttatttagtgaaaacactaccttaaccaagtgattaaagtcagcaccatcagtgatgccatgtagatattatgtaacccctgctctgatgggataaaaagggcactttacctctgtggtctcctctgcaaaaattcaaaggcccagtgtaattgatggcagctgaaacccatctggactgt----------gatgccggctgtagtaggggagatgcaggtgtggctgtgcgctccgtggagccc-ctggagccgggaacaggcggaagccccaaccccttatgagttgacagggcaagagccttgtgctccccaggctcagctgcagttgcccagcagcggctgtgga-caggacatccctgtgcgcttggggttcaggagcaggcagaagccccaccctccccggtgcagctgcagctgctcaagctgtgtctacaaacctgggcatccctgtgttcttgggtgccagga----gtaagagccctgccctcctgggcgcagctgcagatgcccaagctgcagcggcagacccgggcatctctgcactcttgggggcctgggaaagccctttttgccc--ccgcaggcttggaggtgcctgctcctggtgtctgatctctccctgctcctgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29682372 1502 + 173848474 taaatatggtattctgaatagtaaatttgtttctcatgcgggttcagctaattctgtaattgcttcacatgcatacca--gttgaacaaaaatattaaaatatgaacagtggcatccaggtttctccctgttggtaagagaagttacagagaagcaagaaaggaaggccagaatgaccattagggactgtgttagagtcagagttatcactatgacctcatgtttaaacacaagcccaaat----gcacatgg--acacaca--cagatggacaaataaggaaacaacgacagatatgtgtgtattcagggcttactgtgtagacacacattacctagccctttctgctgaaatagcctagaaacaatgttaccctcatagcaatgtgcacatgtcacactcagataatgttttctaatgccattttccagtgaaaagaaacagagatcgttggagaaatgtctgatta------------taagatatttctaagcctggtgaagaaatatataagagaagcct---ggagaagaaccagtaataccagaaatcagggaggggccctgaagagaaaaggataacaaaaggatgaagacctgtccaagggacccagcagctaaattgaaagagctctcaatgggtaaagctggagcaatttcaacaacaaaataaataacatatcactggattataacctgaa------------------gtataaaacgtatgagtccatactcttataaataaatgattgaataaatacataaat-gagaagaagggagaaatcttccttactagtctattaatagtccccactttcagatgtggagctcatgatctccttcgttaagtgtaggctggactcagtgactgtcttccaaggaatagagtatggacaggtaacaattgtaagtttcagttttatttagtgaaaacactaccttaaccaagtgattaaagtcagcaccatcagtgatgccatgtagatattatgtaacccctgctctgatgggataaaaagggcactttacctctgtggtctcctctgcaaaaattcaaaggcccagtgtaattgatggcagctgaaacccatctggactgt----------gatgccggctgtagtaggggagatgcaggtgtggctgtgcgctccgtggagcgc-ctggagccgggaacaggcggaagccccaaccccttatgagttgacagggcaagagccttgtgctccccaggctcagctgcagttgcccagcagcggctgtgga-caggacatccctgtgcgcttggggttcaggagcaggcagtagccccaccctccccggtgcagctgcagctgctcaagctgtgtctacaaacctgggcatccctgtgttcttgggtgccagga----gtaagagccctgccctcctgggcgcagctgcagatgcccaagctgcagcggcagacccgggcatctctgcactcttgggggcctgggaaagccctttttgccc--ccgcaggcttggaggtgcctgctcctggtgtctgatctctccctgctcctgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5472948 1505 +   6154872 taaatatggtattctaaatagtaaatttgtttctcatgcgggttcagctaattctgtaattgcttcacatgcatacca--gttgaacaaaaatattaaaatatgaacagtggcatccaggtttctccctgttggtaagagaagttacagagaagcaagaaaggaaggccagaatgaccattagggactgtgttagagtcagagttatcactatgacctcatgtttaaacacaagcccaaat----gcacatgg--acacaca--cagatggacaaataaggaaacaacaacagatatgtgtgtattcagggcttactgtgtagacacacgttacctagccctttctgctgaaatagcctagaaacaatgttaccctcgtagcaatgtgcacatgtcacactcagataatgttttctaatgccattttccagtgaaaagaaacagagatcgttggagaaatgtctgatta------------taagatatttctaagcctggtgaagaaatatataagagaagcct---ggagaagaaccagtaataccagaaatcagggaggggccctaaagagaaaaggataacaaaaagatgaagacctgtccaagggacccagcagctaacttgaaagagctctcaatgggtaaagctggagcaatttcaacaacaaaataaataacatatcactggattataacctgaa------------------gtataaaacgtatgagtccatactcttataaataaatgattgaataaatacataaat-gagaagaagggagaaatcttccttactagtctattaatagtccccactttcagatgtggagctcatgatctccttcgttaagtgtaggctggactcagtgactgtcttccaaggaatagagtatggacaggtaacaattgtaagtttaagttttatttagtgcaaacactaccttaaccaagtgattaaagtcagcaccatcagtgatgccatatagatattatgtaacccctgctctgatgggataaaaagggcactttacctctgtggtctcctctccaaaaattcaaaggcccagtgtaattgatggc-gctgaaacccatctggactgt----------gatgctggctgtagtaggggagatgcaggtgtggctgtgcgctctgtggagccc-ctggagccgggaacaggcagaagccccaaccccttatgagttgacagggcaagagccttgtgctccccagcctcagctgcagttgcccagcagcggctgcgga-caggacatccctgtgcgcttggggttcagaagcaggcagaagccccaccctcccgggtgcagctgcagctgctcaagctgtgtctacaaacctgggcatccctgtgctcttgggtgccagaagtaggtaagagccctgccctcctgggcgcagctgcagatgcccaagctgcagtggcagacccgggcatctctgcactcttgggggcttgggaaagccctttttgccc--ccgcaggcttggaggtgcctgctcctggtgtctgatctctccctgctcctga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29644732 1504 + 172585720 taaatatggtattctgaatagtaaatttgtttctcatgcaggttcagctaattctgtaattgcttcacatacatacta--gttgaacaaaaatgtttaaagatgaacagtggcatccaggtttctccctgttggtataagaagttacagagaagcaagaaaggaaggccagaatga-cattagggactgtgttagagccagagttatcactatgacctcatgtttaaacacaagcacaaat----acacacacacacacaca--cagatggacaaatattgaaacaatgacagatacatgtgtgttcagagcttactgtgtggacagatgttgcctagccttttctggtgaaatagcctagaaacaatgttaccctcatagcaatgtctacatgtcccattcagataatgttttctaatgccattttccagtgaaaagaaccagagatccttggggaaatgtctgattc------------taagatatttctaaggctggtg--aaaatatgtaagagaagcct---ggagaagaaccagtaataccagaaatcaaggaggggccctgaagagaaaaggataacaaaaggatgaagacttgtccaagggacccagcagccaacatgaaagagctctcaatggggaaagctggagcaatttcaacaacaaaataaataatatgtcactggattataacctgaa------------------gtataaaaagtatgagtccatactgttacaaataactgactgaataaatacataaat-gagacgaagagagaaatcttccttactagtctattaatagtccccactttcagatgtggagctcatgatctcattcgttaagcataggttgcactcagtgactattttccaaggaatagagtactgaaagctaacagctgtaagtttaagttttatttagtgcaaacactaccttaaccaagtgattaaagtcagca-catcagtgatgccatgtagatattatgtaacccctgctctgatgggataaaaagggcactttacctctgtggtctcctctccaaaaattcaaaggcccagtgtcattgactgcagctgaggcccgactgaaccgg----------gacgccgactatagtaggggaggtgcggttggggctgtgcgctcgatggagcccgcaggagccgggaacaggcggaagcccccatcccttaagagttggca-ggcaagagccctgtgctccccaggctcagctgcagttgcctagcagcggctgcggacccggccatccctgtgcgcttggggttcgggagccgacagaagccccaccctcctgtgtgca-ctgcagctgctcaagctgtggctacaaacctgggcatccctgtgctcttaggtgccaggagcaggtaataggcctgccgtcttgtgcgcagttgcagatgcccgagctgcagctgcagacccgggcatctctgcactcttgggggcccgggaaagccctttttgccc--ccgtaggcttggaggtgcctgctcctggtgtctggcctctccctgctcctgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29307275 1508 - 170955103 taaatatggtattctgaatagtaaatttgtttctcatgcaggttcagctaattctgtaattgcttcacatacatacta--gttgaacaaaaatgtttaaagatgaacagtggcatccaggtttctccctgttggtataagaagttacagagaagcaagaaaggaaggccagaatga-cattagggactgtgttagagccagagttatcactatgacctcatgtttaaacacaagcacaaatacacacacacacacacacaca--cagatggacaaatattgaaacaatgacagatacatgtgtgttcagagcttactgtgtggacagatgttgcctagccttttctggtgaaatagcctagaaacaatgttaccctcatagcaatgtctacatgtcccattcagataatgttttctaatgccattttccagtgaaaagaaccagagatccttggggaaatgtctgattc------------taagatatttctaaggctggtg--aaaatatgtaagagaagcct---ggagaagaaccagtaataccagaaatcaaggaggggccctgaagagaaaaggataacaaaaggatgaagacttgtccaagggacccagcagccaacatgaaagagctctcaatggggaaagctggagcaatttcaacaacaaaataaataatacgtcactggattataacctgaa------------------gtataaaaagtatgagtccatactgttacaaataactgactgaataaatacataaat-gagacgaagagagaaatcttccttactagtctattaatagtccccactttcagatgtggagctcatgatctcattcgttaagcataggttgcactcagtgactattttccaaggaatagagtactgaaagctaacagctgtaagtttaagttttatttagtgcaaacactaccttaaccaagtgattaaagtcagca-catcagtgatgccatgtagatattatgtaacccctgctgtgatgggataaaaagggcactttacctctgtggtctcctctccaaaaattcaaaggcccagtgtcattgactgcagctgaggcccgactgaaccgg----------gacgccgactatagtaggggaggtgcggttggggctgtgcgctcgatggagcccgcaggagccgggaacaggcggaagcccccatcccttaagagttggca-ggcaagagccctgtgctccccaggctcagctgcagttgcctaccagcggctgcggacccggccatccctgtgcgcttggggttcgggagccgacagaagccccaccctcctgtgtgca-ctgcagctgctcaagctgtggctacaaacctgggcatccctgtgctcttaggtgccaggagcaggtaatagccctgccctcttgtgcgcagttgcagatgcccgagctgcagctgcagacccgggcatctctgcactcttgggggcccgggaaagccctttttgccc--ccgtaggcttggaggtgcctgctcccggtgtctggcctctccctgctcctgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2315480 1502 -   2996164 taaatatggtattctgaatagtaaatttgtttctcatgcaggttcagctaattctgtaattgcttcacatacatacta--gttgaacaaaaatgtttaaagatgaacagtggcatccaggtttctccctgttggtataagaagttacagagaagcaagaaaggaaggccagaatga-cattagggactgtgttagagccagagttatcactatgacctcatgtttaaacacaagcacaaat------acacacacacacaca--cagatggacaaatattgaaacaatgacagatacatgtgtgttcagagcttactgtgtggacagatgttgcctagccttttctggtgaaatagcctagaaacaatgttaccctcatagcaatgtctacatgtcccattcagataatgttttctaatgccattttccagtgaaaagaaccagagatccttggggaaatgtctgattc------------taagatatttctaaggctggtg--aaaatatgtaagagaagcct---ggagaagaaccagtaataccagaaatcaaggaggggccctgaagagaaaaggataacaaaaggatgaagacttgtccaagggacccagcagccaacatgaaagagctctcaatggggaaagctggagcaatttcaacaacaaaataaatactatgtcactggattataacctgaa------------------gtataaaaagtatgagtccatactgttacaaataaatgactgaataaatacataaat-gagacgaagagagaaatcttccttactagtctattaatagtccccactttcagatgtggagctcatgatctcattcgttaagcataggttgcactcagtgactattttccaaggaatagagtactgaaagctaacagctctaagtttaagttttatttagtgcgaacactaccttaaccaagtgattaaagtcagca-catcagtgatgccatgtagatattatgtaacccctgctctgatgggataaaaagggcactttacctctgtggtctcctctccaaaaattcaaaggcccagtgtcattgactgcagctgaggcccgactgaaccgg----------gacaccgactatagtaggggaggtgcggttggggctgtgcgctcgatggagcccgcaggagccgggaacaggcggaagcccccatcccttaagagttggca-ggcaagagccctgtgctccccaggctcagctgcagttgcctagcagcggctgcggacccggccatccctgtgcgcttggggttcgggagccgacagaagccccaccctcctgtgtgca-ctgcagctgctcaagctgtggctacaaacctgggcatccctgtgctcttaggtgccaggagcaggtaataggcctgccgtcttgtgcgcagttgcagatgcccgagctgcagctgcagacccgggcatctctgcactcttgggggcccgggaaagccctttttgccc--ccgtaggcttggaggtgcctgctgctggtgtctggcctctccctgctcctgg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1       39500 1462 +    766320 taaatatggtattctgaatagtaaatttgtttctcatgcagattcagctaattctgtaattgcttcacatacatacta--gttgaacaaaaatgtttaaagatgaacggtggcatccaggtttctccctgttggtataagaagttacagagaagcaagaaaggaaggccagaatga-cattaaggactgtgttagagtcagagttatcactatgacttcatgtttaaacacaagcacaaat----acacacggacacacaca--cagatggacaaatattgaaacaatgacagatacatgtgtgttcagagcttactgtgtagacacacattgcctagccttttctggtgaaatagcctagaaacaatgttaccctcatagcaatgtgtacatgtcccattcagataatgttttctaatgccattttccagtgaaaagaaccagagatccttagggaaatgtctgattc------------taagatatttctaaggctgatgaaaaaatatgtaagataagcct---ggagaagaaccagtaataccggaaatcaaggaggggccctgaagagaaaaggataacaaaaggatgaagacctgtccaagggacccagcagccagcttgaaagagctctcaatggggaaagctggagcactttcaacaacaaaataaataaaatatcactggattataacctgaa------------------gtataaaaagtaactgtccatactgttacaaataaatgactgaataaatacataaacggagaagaagagagaaatcttccttactagtctattaatagtccccactttccggggtggagctcatgatctccttcactaagtgtaggctggactcagtgactgtcttccaaggaatagagtatggaaaggtaacaactgtaagtttaagttttatttagtgcaaacaccactttcagcaagtgattaaagtcagca-catcagtgatgccatgtagatattatgtaacccctgctgt-----gataaaaagggcactttacctctgtggtctcctctccaaaaattcaaaggcccagtgtcattgactgcagctgaggcccgactgaaccgg----------gacgccgaccgtagtaggggaggtgcggttggggctgtgcgctcgatggagcccgcaggagccaggaacaggcggaagtccccatcccttaagagttggca-ggcaagagccctgtgctccccaggctcagctgcagttgcctagcagcggctgcggacccgggcatccctgggcgcttggggttcgggagccggcagaagccccacccacctgtgtgcacctgcagctgctcaagctgtggctaaaaacccgggcatccctgtgctcttaggtgccaggagcaggtaat-----------------------------------------agctgcagacccgggcatctctgcactcttgggggcccgggaaagccccttttgccc--ccgtaggcttggaggtgcctgctcccggtgtctggcctctccctgctcctgg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28592210 1461 -  71996105 taaatatggaattctgaatagtaaatttgtttctcatgcaggttcagctaattctgtaattgcttcacatacatacta--gttgaacaaaaatgtttaaagatgaacggtggcatccaggtttctccctgttggtataagaagttatggagaagcaagaaaggaaggctagaatga-cattagggactgtgttagagtcagagttatcactatgacctcatgtttaaacacaagcacaaat----acacacagacacacaca--cagatggacaaatattgaaacaatgacagatacatgtgtgttcagagcttactgtgtagacacacattgcctagccttttctggtgaaatagcctagaaacaatgttaccctcatagcaatgtgtacatgtcccattcagataatgttttctaatgccatttttcagtgaaaagaaccagagatccttagggaaatgtctgattc------------taagatatttctaaggctgatgaaaaaatatgtaagataagcct---ggagaagaaccagtaataccagaaatcaaggaggggccctaaagagaaaaggataacaaaaggatgaagacttgtccaagggacccagcagccagcttgaaagagctctcaatggggaaagctagagcactttcaacaacaaaataaataaaatatcactggattataacctgaa------------------gtataaaaagtaactgtccatactgttacaaatacatgactgaataaatacataaacggagaagaagaaagaaatcttccttactagtctattaatagtccccactttccggggtggagctcatgatctccttcactaagtgtaggctggactcagtgactgtctttcaaggaatagagtatggaaaggtaacaactgtaagtttaagttttatttagtgcaaacactaccttaagcaagtgattaaagtcagca-catcagtgatgccatgtagatattatgtaatccctgctgt-----gataaaaagggcactttacttctgtggtctcctctccaaaaattcaaaggcccagtgtcattgactgcagctgaggaccgactgaaccgg----------gacgcggactgtagtaggggaggtgcggttggggctgagcgctcgatggagcccgcaggagccgggaacaggcggaagtcctcatcccttaagagttggca-ggcaagagccctgtgctccccaggctcagctgcagttgcctagcagcggctgcggacccgggcatccctgtgcgtttggggttcgggagccggcagaagccccaccctcctgtgtgcacctgcagc-gctcaagttgtggctacaaacctgggcatccctgtgcccttaggtgccaggagcaggtaat-----------------------------------------agctgcagacccgggcatctctgcactcttgggggcccgggaaagccctttttgtcc--ccgtaggcttggaggtgcctgctcccggtgtctggcctctccctgctcctgg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1     2165403 1522 -   3067355 taaatatggtattctgaatagtacatttgtttctcatgcgggttcagctaattctgtaattgattcacatacatactg--gttgaacaaaaatgtttaaagatgaacagtggcatctaggtttctccctgttggcataagaagttacggagaagtaagaaaggaaggccagaatga-cattagagactgtgttagagtcagagttatcactatgacctcatgtttaaacacaagcacaaat----acacatggacacacaca--cagatggacaaatattgaaacaatgacagatacatgtgtgttcagagcttactgtgtagacacacattgcctcgccttttctggtgaaatagcctagaaacaatgttaccctcatagcaatgtgcacatgtcccattcagataatgttttctaatgccattttccagtgaaaagaaccagagatccttggggaaatgtctgattctaagacattttgtaagatatttctaaggctggtgaaaaaatatataagataagcctggaggagaagaaccagtaataccggaaatcaaggaggggccctaaagagaaaaggataacaaaaggatgaagacttgtccaagggacccagcagccaacctgaaagagttctcaatggggaaagctggagcaatttcaacaacaaaataaataatatgtcactggattataacctgaa------------------gtataaaaagtgtgagtccatactgttacaaataaatgactgaataaatacataaat-gagacgaagagagaaatcttccttactagtctattaatagtccccactttcagatgtgaagctcatgatctccttcgttaagcataggctgcactcagtgactattttccaaggaatagagtactgaaaggtaacaactgtaagtttaatttttatttagtgcaaacactaccttaaccaagtgattaaagtcagca-catcagtgatgccatgtagatattatgtaacccctgctctgatgggataaaaagggcactttacctctgtggtctcctctccaaaaattcaaaggcccagtgtcattgactgcagctgaggcccgactgaaccgg----------gacgctggctgtagtaggggaggtgcggttggggctgtgcgctcgacggagcctgcaggagccgggaacaggcggaagcccccatcccttaggagttggta-ggcaagagccctgtgctccccaggctcagctgcagttgcctagcagcggctgcggacccgggcatccctgagcgcttggggttcgggagccggcagaagccccaccctcctgtgtgcacctgcagctgctcaagctgtggctacaaacctgggcatccctgtgctcttaggtgccaggagcaggtaataaccctgccctcttgtgcgcagttgcagatgcccaagctgcagctgcagacccgggcatctctgcactcttgggggcctgggaaagccctttttgccc--cggtaggcttggaggtgcctgctcctggtgtctggcttctccctgctcctgg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             171604146 1485 - 171630274 taaacagtgtattctgaatggtgaatttttttctcgtgtgggtacggctggttatataat-------------taccagtgttggacaaaaacgttagaagatgagcagtggcatcccggttcctcactgttgttatgggaagtcacaaagaggtcagaaaggaagtccagaatga-ccatgaggactgtgtt------agagttatcactatgacctcatgtttaaacataagcataaat----acacacggacacacacacccagatggacagatacagaaacaatgacagatacgtgtggatacagggcttactgtgcagacacacatgacccagccatttctgctgaaatagcctag-aacactgttacccgcattgcagtgtgcacatgtcacattcatatagtgttttcgaatgccattttccagtgaaaacaaccagagatccttggagaaatgttagattc------------taagatatttctgaggctggtgaagaaatatagaagacaagcctgcagtagaaggaccagtaataccagaaatcatggagggg-cctaaagagaaaaggatagcaaaaggttgaagacctgtccaaggcacccagtagccaaccagaaagggctcttaacgggcaaagctggagcaatttcaacaaggaaataaataacataccactggattataacccgaattaaaaaaggtatgagtggtataaaaagtatgagtccatactgttacaaatacatgattgaatcaatatgcagatggagaagcagacagaaatcttccctactcatctagaaacgccccccactttcagatgtggagttcatgatctacttcatttagtgtcggctgg----aataacagtctcccaaggaatagagtacagagaggtaacaattttaagtttccgttttatttagtgcaaacactaggttaagcaagtgattaaagctggcgccattg-------catat-gatattatgtgctccctgctgtgacggaataaaaagggcactttatctctgtggtcacacctttgaaaatgcaaaggcccagtgtaaGT-----cagccgcggcccgtgtggagtggcagctgccctgacgctggctgcagtgggagaggt----------------gctccatggagcctgcagaagcc-ggagcaggcggaagccccagctccctagcagttggca-ggcgggagtcttgtgctcccgagactcagttgcagctgcccagctctggctgcggacccgggcatccctgctc-ttttggttctgggagcaggcagaagttccaccctcccgtgtgcaagtgcagatacttgagctgtggccacacacccaggcatccctgtgctcttgggtgccagaggtaggtgggatccctgccctcc----cgcacttgtagcttcccaagctgtggctgcagaccccggcatctcagcacttttgggggcccgggaagggctcccacgcccctctgcagtctcggaggtgcctgctcctgtggcctggcc-ctccctgctcctgg
i calJac3.chr4             C 0 N 0
e dasNov3.JH570037            315319 37722 -    859332 I
e canFam3.chr35             26138974 64429 +  26524999 I
e otoGar3.GL873742           1671351 7131 -   2232465 I
e manLeu1.NW_012099655v1       10210 39054 -    352859 I
e nomLeu3.chr1a             74365396 17331 + 122973662 I

a score=4203655.000000
s hg38.chr6_GL000254v2_alt   467005 1074 +   4827813 tgcgtgctctgatctcggagcgtggttgaggccaggcccaggtgctattgcaacctggcctggtgtgcccacacttggggcagcactgacatgccagtcttctgccacctcagccccctctgggctttgggcaccagtaagcaagggagggaggctggagggggtgctgctgagggcagcttggcgctggcctgcaggtgcctcttggcaggaacagcctg-ggcaccgtcaacagtggcaggaggcccacaggctcctgggcagaaagggacgggtccccggtgaggccccaccttcaa--ctcagggaaggattgaagcctgggagacgggctgccagcctcgcagactggagtggggacttacgatgctttttccaagcctgcccgtggctgcccaaggaccaatcagcaagcacttcctttcctctgaagtccataaaaattcccagactcagccagacacaaaaagatgtcaggacaaccagctgcagagaggaattacctaccctagggtctcttttctgctgagacctgaacactctgtgggatgacctgtctgaggagaggagctacccactccagggtctcctctctgcggagagctgaacactcgttaggacaccctggctatggagaggagcgggtttcctctcagctgttctattgttcaataaagctcctcttcaccttactcaccctccacttatccacatacctcgtgagtgtgggacaagaacttgggacccactgaatggcatggctgaaagagctgtcacacaaacagggctgaaacatgccctttcctcacctcattgtggttgacataaaggagataagagatgcaactctttggggagcccagacctaggagctccctgagccagggctgtgacaccc-ttttgggtggttctgtggttcctggtgcggaagctgcttgcagtacacctggtccagccgcagacttgcagggagatggcacccctgtcagtgcctggaactgcctgccctgctgcagcaagcatgcctggctgtgtgcagtagctggaccccacacttgctccctcatacacacctG
s panTro5.chr6             29448076 1072 + 175400573 tgcgtgctctgatcttggagcgtggttgaggccaggcccaggtgctattgcaacctggcctggtgtgcccacacttggggcagcactgacatgccagtcttctgccacctcagccccctctgggctttgggcaccagtaagcaagggagggaggctggagggggtgctgctgagggcagcttggcgctggcctgcaggtgcctcttggcaggaacagcctg-ggcaccgtcaacagtggcaggaggcccacaggctcctgggcagaaagggacgggtccccggtgaggccccaccttcaa--ctcagggaaggattgaagcctgggagacgggctgccagcctcgcagactggcgtggggacttacgatgctttttccaagcctgcccgtggctgcccaaggaccaatcagcaagcacttcctttcctctgaagtccataaaaattcccagactcagccagacacaaaaagatgtcaggacaaccagctgcagagaggaattacctaccctagggtctcttttctgctgagacctgaacactctgtgggatgacctgtctgaggagaggagctacccactccagggtctcctctctgtggagagctgaacactcgttaggacaccctggctatggagaggagcgggtttcctctcagctgttctattgttcaataaagctcctcttcaccttactcaccctccacttatccacatacctcgtgagtgtgggacaagaacttgggacccactgaatggcatggctgaaagagctgtcacacag--agggctgaaacatgccctttcctcacctcattgcggttgacataaaggagataagagatgcaactctttggggaacccagacctaggagctccctgagccagggctgtgacaccc-ttttgggtggttctgtggttcctggtgcggaagctgcttgcagtacacctggtccagctgcagacttgcagggagatggcacccctgtcagtgcctggaactgcctgccctgctgcagcaagcatgcctggctgtgtgcagtagctggaccccacacttgctccctcatacacgcctG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29683874 1072 + 173848474 tgcatgctctgatcttggagcatggttgaggccaggcccaggtgctattgcaacctggcctggtgtgcccacacttggggcagcactgacatgccagtcttctgccacctcagccccctctgggctttgggcaccagtaagcaagggagggaggctggagggggtgctgctgagggcagcttggcgctggcctgcaggtgcctcttggcaggaacagcctg-ggcaccgtcaacagtggcaggaggcccacaggctcctgggcagaaagggacgggtccccggtgaggccccaccttcaa--ctcagggaaggattgaagcctgggagacgggctgccagcctcgcagactggagtggggacttacgatgctttttccaagcctgcccgtggctgcccaaggaccaatcggcaagcacttcctttcctctgaagtccataaaaattcccagactcagccagacacaaaaagatgtcaggacaaccagctgcagagaggaattacctaccctagggtctcttttctgctgagacctgaacactctgtgggatgacctgtctgaggagaggagctacccactccagggtctcctctctgtggagagctgaacactcgttaggacaccctggctatggagaggagcgggtttcctctcagctgttctattgttcaataaagctcctcttcaccttactcaccctccacttatccacatacctcgtgagtgtgggacaagaacttgggacccactgaatggcatggctgaaagagctgtcacacag--agggctgaaacatgccctttcctcacctcattgcggttgacataaaggagataagagatgcaactctttggggagcccagacctaggagctccctgagccagggctgtgacaccc-ttttgggtggttctgtggttcctggtgcggaagctgcttgcagtacacctggtccagctgcagacttgcagggagatggcacccctgtcagtgcctggaactgcctgccctgctgcagcaagcatgcctggctgtgtgcagtagctggaccccacacttgctccctcatacacgcctG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5474453 1074 +   6154872 tgcatgctctgatctcggagcgtggttgagggcaggcccaggtgctgttgcaacctggcctggtgtgcccacacttggggcagcactgacatgccagtcttctgccacctcagccccctctgggctttgggcaccagtaagcaagggagggaggctggagagggtgctgctgagggcagcttggcactggcctgcaggtgcctcttggcaggaacagcctg-ggcaccgtcaacagtggcaggaggcccacaggctcctgggcagaaagggacgggtccccggtgaggccccaccttcaa--ctcagggaagaattgaagcctgggagacgggctgccagcctcgcagactggagtggggacttacgatgcttttttcaagcctgcccgtggctgcccaaggaccaatcagcaagcacttcctttcctctgaagtccataaaaattcccagactcagccagacacaaaaagatgtcaggacaaccagctgcagagaggaattacctaccctagggtctcttttctgctgagacctgaacactctgtgggatgacctgtctgaggagaggagctacccactccagggtctcctctctgcagagagctgaacactcgttaggacaccctggctatggagaggagcgggtttcctctcagctgttctattgttcaataaagctcctcttcaccttactcaccctccacttatccacatacctcgtgagtgtgggacaagaacttgggacccactgaatggcatggctgaaagagctgtcacacaaacagggctgaaacatgccctttcctcacctcattgcggttgacataaaggagataagagatgcaactctttggggagcccagacataggagctccctgagccagggctgtgacaccc-ttttgggtcgttctgtggttcctggtgtggaagctgcttgcagtacacctggttcagccgcagacttgcagggagctggcacccctgtcagtgcctggaactgcctgccctgctgcagcaagcatgcctggctgtgtgcagtagctggaccccacacttgctccctcatacatgcctG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29646236 1077 + 172585720 cactggctctgatatcagagcacggttgaggctgagtccaggtgctgttgcaacctggcctgatgtgcccacacttggggcagtactgacatgccagtcttctgccacttcagccccctctgggctttgggcaccggtaagcaagggagggaggctggagggggtgctgctgagggcagcttggcgctggcctgcaggtgccccttggcaagaacagcctggggcaccgtcaacagtggcaggaggccgacaggctcctgggcagaaagggacaggtccccgttgaggccccaccttcaacccccagggaagggtggaaacctgggagacgggctgccagccttgcagactggagtttgaacttagggtgctttttccaagcctgtccatggctgcgcaaggaccaatcagcatgcacttcctctcctctgaagtccataaaaactcccagactcaaccagatgcaaaaagatgtcaggacaaccagctgcagagaggaattacctaccctagggtatcttttctgctgagacctgaacactctgtgggatgacctgtctgaagagaggaactacccactccagggtctcctctctgctgagagctgaacaccagtcaggacaccctggctatggagaggagcaggtttcctctcagctgttctattgttcaataagactcctcttcaccttactcaccctccgcttatccgcataccctgtgggtgcgggacaagaacttgggacccactgaatggcatggctgaaagagccgtcacacaaacagggctggaacataccctttcctcacctcattgcaggtgacataaaggagataagagctgcagccctttggggagcctagacctagatgctccctgagccagggctgtgacaccctttttgggtggttctgtggttcctggtgtgggagctgcttgcagtacacctggtccagccacagacttgcagggagctggcacccctgtcagtgccaggaactgca-gccctgccacggcaagcatgcctggctgtgtgcagtggctggaccccactcttgctcgctcatacacccctg
i rheMac8.chr4             C 0 I 35059
s macFas5.chr4             29308783 1077 - 170955103 cactggctctgatatcagagcacggttgaggctgagtccaggtgctgttgcaacctggcctgatgtgcccacacttggggcagtactgacatgccagtcttctgccacttcagccccctctgggctttgggcaccggtaagcaagggagggaggctggagggggtgctgctgagggcagcttggcgctggcctgcaggtgccccttggcaagaacagcctggggcaccgtcaacagtggcaggaggccgacaggctcctgggcagaaagggacaggtccccattgaggccccaccttcaacccccagggaagggtggaaacctgggagacgggctgccagccttgcagactggagtttgaacttagggtgctttttccaagcctgtccatggctgcgcaaggaccaatcagcatgcacttcctctcctctgaagtccataaaaactcccagactcagccagatgcaaaaagatgtcaggacaaccagctgcagagaggaattacctaccctagggtctcttttctgctgagacctgaacactctgtgggatgacctgtctgaagagaggaactacccactccagggtctcctctctgctgagagctgaacaccagtcaggacaccctggctatggagaggagcaggtttcctctcagctgttctattgttcaataagactcctcttcaccttactcaccctccgcttatccgcataccctgtgggtgcgggacaagaacttgggacccactgaatggcatggctgaaagagccgtcacacaaacagggctggaacataccctttcctcacctcattgcaggtgacataaaggagataagagctgcagccctttggggagcctagacctagatgctccctgagccagggctgtgacaccctttttgggtggttctgtggttcctggtgtgggagctgcttgcagtacacctggtccagccgcagacttgcagggagctggcacccctgtcagtgccaggaactgca-gccctgccacggcaagcatgcctggctgtgtgcagtggctggaccccactcttgctcgctcatacacccctg
i macFas5.chr4             C 0 I 35155
s macNem1.NW_012011356v1    2316982 1077 -   2996164 cactggctctgatatcagagcacggttgaggctgagtccaggtgctgttgcaacctggcctgatgtgcccacacttggggcagtactgacatgccagtcttctgccacttcagccccctctgggctttgggcaccggtaagcaagggagggaggctggagggggtgctgctgagggcagcttggcgctggcctgcaggtgccccttggcaagaacagcctggggcaccgtcaacagtggcaggaggccgacaggctcctgggcagaaagggacaggtccccgttgaggccccaccttcaacccccagggaagggtggaaacctgggagacgggctgccagccttgcagactggagtgtgaacttagggtgctttttccaagcctgtccatggctgcgcaaggaccaatcagcatgcacttcctctcctctgaagtccataaaaactcccagactcagccagatgcaaaaagatgtcaggacaaccagctgcagagaggaattacctaccctagggtatcttttctgctgagacctgaacactctgtgggatgacctgtctgaagagaggaactacccacttcagggtctcctctctgctgagagctgaacaccagtcaggacaccctggctatggagaggagcaggtttcctctcagctgttctgttgttcaataaaactcctcttcaccttactcaccctccgcttatccgcataccctgtgggtgcgggacaagaacttgggacccactgaatggcatggctgaaagagccgtcacacaaacagggctggaacacaccctttcctcacctcattgcaggtgacataaaggagataagagctgcagccctttggggagcctagacctagatgctccctgagccagggctgtgacaccctttttgggtggttctgtggttcctggtgtgggagctgcttgcagtacacctggtccagccgcagacttgcagggagctggcacccctgtcagtgccaggaactgca-gccctgccacggcaagcatgcctggctgtgtgcagtggctggaccccacacttgctcgctcatacacccctg
i macNem1.NW_012011356v1   C 0 N 0
s cerAty1.NW_012002711v1      40962 1076 +    766320 caccggctctgatatcagagcacggttgaagctgagcccaggtgctgttgaaacctggcctgaggtgcccacacttggggcagcgctgacatgccagtcttctgccacttcagccccctctgggctttgggcaccggcaagcaagggagggaggctggagggggtgctgctgagggcagcttggcgctggcctgcaggtgccccttggcaggaacagcctgaggcaccgacaacaatggcaggaggccgacaggctcctgggcagaaagggacgggtcccggttgagg-cccaccttcaacccccagggaagggtcgaaacctgggagacgggctgccagccttgcagattggagtgtgaacttagggtgctttttccaagcctgtccatggctgctcaaggaccaatcagcaggcacttcctctcctctgaggtccataaaaactcccagactcagccagacgcaaaaagatgtcaggacaaccagctgcagagaggaattacctaccctagggtctcttttctgctgagacctgaacactctatgggatgacctgtctgaggagaggaactgcccactccagggtctcctctctgctgagagctgaacaccagtcaggacaccctggctatggagaggagcgggtttcctctcagctgttctattgttcaataaaactcctcttcaccttactcaccctccgcttatccgcataccccgtgggtgtgggacaagaacttggggtccgctgaatggcatggctgaaagagccgtcacacaaacagggctggaacataccctttcttcacctcattgcaggtgacataaaggagataagtgctgcagccctttggggagcctagacctaggagctccctgagccagggctgtgacaccctttttgggtagttctgtggttcctggtgtgggagctgcttgcagtacacctggtccagccgcagacttgcagggagctggcacccctgtcagtgccaggaactgca-gccctgccatggcaagcatgcctggctgtgtgcagtggctggaccccacgcttgctcgctcatacacccctg
i cerAty1.NW_012002711v1   C 0 I 38427
s chlSab2.chr17            28593671 1077 -  71996105 caccggctctgatatcagagcacggttgaggctgagcctaggtgctgtttaaacctggcctgatgtgcccacacttggggcagcgctgacatgccagtcttctgccacttcagccccctctgggctttgggctccggtgagcaagggagggaggctggagggggtgctgctgagggcagcttggcgctggcctgcaggtgccccttggcaggaacagcctggggcaccgacaacagtggcaggaggccgacaggctcctgggcagaaagggacgggtccccgttgaggccccaccttcaacccccagggaagggtcgaaacctgggagacgggctgccagccttgcagactggagtgtgaacttagggtgctttttccaagcctgtccatggctgcgcaaggaccaatcagcaggcacttcctttcctctgaagtccataaaaactcccagactcagccagacgcaaaaagatgtcaggacaaccagctgcagagaggaattacctaccctagggtttcttttctgctgagacctgaacactctatgggatgacctgtctgaggagaggaactacccactccaaggtctcctctctgctgagagctgaacaccagtcaggacaccctggctatggagaggagcgggtttcttctcagctgttctattgttcaataaaactcctcttcaccttactcaccctccgcttatctgcatatcctgtgggtgcgggacaagaacttgggacccactgaatggcatgactgaaagagccgtcacacaaacagggctggaacataccctttcctcacctcattgcaggtgacataaaggagataagagttgcagccctttggggagcctagacctaggagctccctgagccagggctgtgacaccctttttgggtggttctgtggttcctggtgtgggagctgcttgcagtacacctggtccagccgcagacttgcagggagctggcacccctgtcagtgccaggaactgca-gccctgccatggcaagcatgcctggctgtgtgcagtggctggaccccacgcttgctcgctcatacacccctg
i chlSab2.chr17            C 0 I 6426
s colAng1.NW_012115566v1    2166925 1077 -   3067355 cactggctctgatatcagagcatggctgaggctgagcccaggtgctgttgcaacctggcctgatgtgcccacacttggggcagtgctgtcatgccagtcttctgccacttcagccccctctgggctttgggcaccggtaagcaagggagggaggctggagggagtgctgctgagggcagcttggcgctggcctgcaggtgccccttggcaggaacagcctggggcaccatcaacagtggcaggaggccgacaggctcctgggcagaaagggacgggtccacgttgaggccccactttaaaaccccagggaagggttgaaacctgggagacgggctgccagccttgtgggctggagtgtgaacttagggtgctttttccaagcctgtccatggctgctcaaggaccaatcagcacgcacttcctctcctctgaagtccataaaaactcccagactcagccagacgcaaaaagatgtcaggacagccagctgcagagaggaattacctaccctggggtctcttttctgctgagacctgaacactctatgggatgacctgtctgaggagaggagctacccactccagggtctcctctctgctgagagctgaacactagtcaggacaccctggctatggagaggagcgggtttcctctcagctgttctattgttcaataaaactcctcttcaccttactcaccctccgcttatccgcataccctgtgggtgtgggacaagaacttgggagccactgaatggcatggctgaaagagccgtcacacaaacagggctggaacataccctttcctcacctcattgcaggtgacataaaggagataagagctgcagccctttggggagcctagacctaggagctcgctgagccagggctgtgacaccctttttgggtggttctgtggttcctggtgtgggagctgcttgcagtacacctggtccagctgcagacttgcagggaggcggcacccctgtcagtgccaggaactgca-gccctgccacggcaagcatgcctggctgtgtgcagtggctggaccccactcttgctggctcatacacccctg
i colAng1.NW_012115566v1   C 0 I 40269
e dasNov3.JH570037           315319 37722 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1671351 7131 -   2232465 I
e manLeu1.NW_012099655v1      10210 39054 -    352859 I
e nomLeu3.chr1a            74365396 17331 + 122973662 I

a score=1006206.000000
s hg38.chr6_GL000254v2_alt   468079 1811 +   4827813 CCACAGTAAACATACTGCAGTATGTTGGgagatattggattttaccaaaagctttttcagcatctattgagatgatcatatggcttttccttttaattctgtttatgtggtgaatcacatttgtagatttgcagatgttcaaccaatcttgcatgccagaaatagagccttcttgattgtggtgtattaactttttgatgtgctgctggatttgtttgattagtattttctcaaggatttttccttctatgttcatcagggatattggatggaatttttttcttttctttctttttttTTTTTTTTTATTAAGCTAACTCACCTAACTTagtgtgggtcacatatcttggcttgataatcccaagctgtgcttagaaacccaggtagcaccaggacatcctgcagctcagggttgggctctggctgcactgtgggatctgatatgcttctgggttgctgggaaagtactcaggtgaagcaaggcattcagctgggctgtgcaagctgcacaatgcacctgcttctccagggcagctaggcataggacctgagaggagcctgcaggcaggagggcttgcagaacagatgtgtcttagtcccatagggaagccagccctgctctcctttggcttgacagtcagctgagtcaagagccttgcagagggagatgggaagctctcagggatgtgtgtctatggctaccctccaccaaagctgcccagcacacaaaagctcccaggctctgcactgtctgaagtactgtctctgcctgtt-ccccagggagatacccctgccagctaacacatttatgggggatatggggtctctcatagctaggatcccagaggtacatgacaagagtgagctgtccctcagttccctggctcaccaatttcccaggagccatctggggctgggaactagccctggcattcaggtaccactt-cagggtttccagatttctgactctacagcctcagcttcagctttgcttctccatacactcagtgttttctctcctaagatcacacattgactttgtatcctgagactttgctgaatttgcttatcagcttaaggagattttgggctgagatgattaaatcaaccaatttatgttgattaactcaataatttggtctctctcggtgaaagcagtgcttcctggctgcaactaattggacatcttgtccctTCCCATCTGTGTAACACATTTTTTATACATGCtttattttgtcataattttagctttacagaaaagttgcaaagatggcaaagaattcccatatacacctcaaccagtttcactttcacttaatgttacatttctctggtacatttttcaaaattcagaaactaacattggtatgttactactaccaaaactctagactatctttggatttcagcaagattttctttaacatcctttttttgttgcagaatcccatccaggacactccattgcctttagttgtcatgtgtttcagtttcctgaatctctgttatcttgtttttcatgatgttgataattctgagtactgctcaggtatcttacagaatgcacttcaatcatggtttgtccaatgttttctaatggttatgttacgggatccttgggttatcacttcaccagctgaaaacctctgtggctagtggcacttatgctggggttttgctcaggcccactggcccactcagcctggcagcctgtgctcagcttacattaccagcctggatactgcacacagccaggcatgCTTGCTGATATTTCTGGTTCTAGATCCTTgtgggagtgtaaattaattcaa
s panTro5.chr6             29449148 1811 + 175400573 CCACAGTAAACATACTGCAGTATGTTGGgagatactggattttaccaaaagctttttcagcatctattgagatgatcatatggcttttccttttaattctgtttatgtggtgaatcacatttgttgatttgcagatgttcaaccaatcttgcatgccagaaatagagccttcttgattgtggtgtattaactttttgatgtgctgctggatttgtttgattagtattttctcaaggatttttccttctatgttcatcagggatattggatggaatttttttcttttcttt-tctttTCTTTTTTTTTATTAAGCTAACTCACCTAACTTagtgtgggtcacatatcttggcttcataatcccaagctgtgcttagaaacccaggtagcaccaggacatcctgcagctcagggttgggctctggctgcactgtgggatctgatatgcttctgggttgctgggaaagtactcaggtgaagcaaggcattcagctgggctgtgcaagctgcacaatgcacctgcttctctagggcagctaggcataggacctgagaggagcctgcaggcaggagggcttgcagaacagatgtgtcctagtcccatagggaagccagccctgctctcctttggcttgacagtcagctgagtcaagagccttgcagagggagatgggaagctctcagggatgtgtgtctatggctaccctccaccaaagctgcccagcacacaaaagctcccaggctctgcactgtctgaagtactgtctctgcctgtt-ccccagggagatacccctgccagctaacacatttatgggggatatggggtctctcatagctaggatcccagaggtacatgacaagagtgagctgtccctcagttccctggctcaccaatttcccaggagccatctggggctgggaactagccctggcattcaggtaccacttgcagggtttccacatttctgactctacagcctcagcttcagctttgcctctccatacactcagcgttttctctcctaagatcACacattgactttgtatcctgagactttgctgaatttgcttatcagcttaaggagattttgggctgagacgatTAAATCAACcaatttatgttgattaactcaatcatttggtctctctcggtgaaagcagttcttcctggctgcaactaattggacatcttgtccctTCCCATCTGTGTAACACATTTTTTATACATGCtttattttgtcataattttagctttacagaaaagttgcaaagatggcaaagaattcccatacacacctcaaccagtttcactttcacttaatgttacatttctctggtacatttttcaaaattcagaaactaacattggtatgttactactaccaaaactctagactatctttggatttcagcaagattttctttaacatcctttttttgttgcagaatcccatccaggaccctccattgcctttagttgtcatgtgtttcagtttcctgaatctctgttaccttgtttttcatgatgttgataattctgagtactgctcaggtatcttacagaatgtacttcaatcatggtttgtccaatgttttctaatggttatgttatgggatccttgggttatcacttcaccagctgaaaacctctgtggctagtggcacttatgccggggttttgctcaggcccactggcccactcagcctggcagcctgtgctcagcttacattaccagcctggatactgcacacagccaggcatgcTTGCTGATATTTCTGGTTCTAGATCCTTgtgggagtgtaaattaattcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29684946 1812 + 173848474 CCACAGTAAACATACTGCAGTATGTTGGgagatattggattttaccaaaagctttttcagcatctattgagatgatcatatggcttttccttttaattctgtttatgtggtgaatcacatttgttgatttgcagatgttcaaccaatcttgcatgccagaaatagagccttcttgattgtggtgtattaactttttgatgtgctgctggatttgtttgattagtattttctcaaggatttttccttctatgttcatcagggatattggatggaatttttttcttttcttt-tctttTCTTTTTTTTTATTAAGCTAACTCACCTAACTTagtgtgggtcacatatcttggcttcataatcccaagctgttcttagaaacccaggtagcaccaggacatcctgcagctcagggttgggctctggctgcactgtgggatctgatatgcttctgggttgctgggaaagtactcaggtgaagcaaggcattcagctgggctgtgcaagctgcacaatgcacctgcttctctagggcagctaggcataggacctgagaggagcctgcaggcaggagggcttgcagaacagatgtgtcctagtcccatagggaagccagccctgctctcctttggcttgacagtcagctgagtcaagagccttgcagagggagatgggaagctctcagggatgtgtgtctatggctaccctccaccaaagctgcccagcacacaaaagctcccaggctctgcactgtctgaagtactgtctctgcctgttcccccagggagatacccctgctagctaacacatttatgggggatatggggtctctcgtagctaggatcccagaggtacatgacaagagtgagctgtccctcagttccctggctcaccaatttcccaggagccatctggggctgggaactagccctggcattcaggtaccacttgcagggtttccacatttctgactctacagcctcagcttcagctttgcctctccatacactcagcgttttctctcctaagatcACacattgactttgtatcctgagactttgctgaatttgcttatcagcttaaggagattttgggctgagacgatTAAATCAACcaatttatgttgattaactcaataatttggtctctctcggtgaaagcagtgcttcctggctgcaactaattggacatcttgtccctTCCCATCTGTGTAACACATTTTTTATACATGCtttattttgtcataattttagctttacagaaaagttgcaaagatggcaaagaattcccatacacacctcaaccagtttcactttcacttaatgttacatttctctggtacatttttcaaaattcagaaactaacattggtatgttactactaccaaaactctagactatctttggatttcagcaagattttctttaacatcctttttttgttgcagaatcccatccaggacactccattgcctttagttgtcatgtgtttcagtttcctgaatctctgttaccttgtttttcatgatgttgataattctgagtactgctcaggtatcttacagaatgtacttcaatcatggtttgtccaatgttttctaatggttatgttatgggatccttgggttatcacttcaccagctgaaaacctctgtggctagtggcacttatgccggggttttgctcaggcccactggcccactcagcctggcagcctgtgctcagcttacattaccagcctggatactgcacacagccaggcatgcTTGCTGATATTTCTGGTTCTAGATCCTTgtgggagtgtaaattaattcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5475527 1807 +   6154872 CCACAGTAAACATACTGCAGTATGTTGGgagatattggattttaccaaaagctttttcagcatctattgagatgatcatatggctttttcttttaattctgtttatgtggtgaatcacatttgttgatttgcagatgttcaaccaatcttgcatgccagaaatagagccttcttgattgtggtgtattaactttttgatgtgctgctggatttgtttgattagtattttctcaaggatttttccttctatgttcatcagggatattggatggaatttttttcttttcttt-----ttttttttTTTTATTAAGCTAACTCACCTAACTTagtgtgggtcacatatcttggcttgataatcccaagctgtgcttagaaacccaggtagcaccaggacatcctgcagctcagggttgggctctggctgcactgtgggatctgatatgcttctgggttgctgggaaagtactcaggtgaagcaaggcattcagctgggctgtgcaagctgcacaatgcacctgcttctccagggcagctaggcataggacctgagaggagcctgcaggcaggagggcttgcagaacagatgtgtcctagtcccatagggaagccagccctgctctcctttggcttgacagtcagctgagtcaagagccttgcagagggagatgggaagctctcagggatgggtgtctacggctaccctccaccaaagctgcccagcacacaaaagctcccaggctctgcactgtctgaagtactgtctctgcctgtt-ccccagggagatacccctgccagctaacacatttatgggggatatggggtctcttgtagctaggatcccagaggtacatgacaagagtgagctgtccctcagttccctggctcaccaatttcccaggagccatctggggctgggaactagccctggcattcaggtaccacttgcagggtttccagatttctgcctctacagcctcagcttcagctttgcctctccatacactcagcgttttctctcctaagatcACacattgactttgtatcctgagactttgctgaatttgcttatcagcttaaggagattttgggctgagacgatTAAATCAACcaatttatgttaattaactcaataatttggtctctctcggtgaaagcagtgcttcccggctgcaactaattggacatcttgtccctTCCCATCTGTGTAACACATTTTTTATACATGCtttattttgatataattttagctttacagaaaagttgcaaagatggcaaagaattcccatatacacctcaaccagtttcactttcacttaatgttacatttctctggtacatttttcaaaattaagaaactaacattggtatgttgctactaccaaaactctagactatctttggatttcagcaagattttctttaacatcctttttttgttgcagaatcccatccaggacactccattgcctttagttgtcatgtgtttcagtttcctgaatctctgttatcttgtttttcatgatgttgataattctaagtactgctcaggtatcttacagaatacacttcagtcatggtttgtccaatgttttctaatggttatgttatgggatccttgggttatcactttaccagctgaaaacctctggggctagtggcacttatgccggggttttgctcaggcccactggcccactcagcctggcagcctgtgctcagcttacattaccagcctggatactgcacacagccaggcatgcTTGCTGATATTTCTGGTTCTAGATCCTTAtgggagtgtaaattaattcaa
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570037           315319 37722 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1671351 7131 -   2232465 I
e colAng1.NW_012115566v1    2168002 40269 -   3067355 I
e manLeu1.NW_012099655v1      10210 39054 -    352859 I
e chlSab2.chr17            28594748 6426 -  71996105 I
e cerAty1.NW_012002711v1      42038 38427 +    766320 I
e macFas5.chr4             29309860 35155 - 170955103 I
e rheMac8.chr4             29647313 35059 + 172585720 I
e nomLeu3.chr1a            74365396 17331 + 122973662 I

a score=6752.000000
s hg38.chr6_GL000254v2_alt   469890 11 +   4827813 ccattgtggaa--
s panTro5.chr6             29450959 11 + 175400573 ccattgtggaa--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29686758 11 + 173848474 ccattgtggaa--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5477334 11 +   6154872 ccattgtggaa--
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29345015 13 - 170955103 ctattgtgaacag
i macFas5.chr4             I 35155 C 0
e dasNov3.JH570037           315319 37722 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1671351 7131 -   2232465 I
e colAng1.NW_012115566v1    2168002 40269 -   3067355 I
e manLeu1.NW_012099655v1      10210 39054 -    352859 I
e chlSab2.chr17            28594748 6426 -  71996105 I
e cerAty1.NW_012002711v1      42038 38427 +    766320 I
e rheMac8.chr4             29647313 35059 + 172585720 I
e nomLeu3.chr1a            74365396 17331 + 122973662 I

a score=310978.000000
s hg38.chr6_GL000254v2_alt   469901 110 +   4827813 tgccacagtaaacatacatgtacatgcatgtttatagtagaatgatttataatcctttgggtataaacccagtaatgggattgctgggtcaaatga-tatttctg-gatctg
s panTro5.chr6             29450970 110 + 175400573 tgccacagtaaacatacatgtacatgcatgtttatagtagaatgatttataatcctttgggtataaacccagtaatgggattgctaggtcaaatga-tatttctg-gatctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29686769 110 + 173848474 tgccacagtaaacatacatgtacatgcatgtttatagtagaatgatttataatcctttgggtataaacccagtaatgggattgctgggtcaaatga-tatttctg-gatctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5477345 110 +   6154872 tgccacagtaaacatacatgtacatgcatgtttatagtagaatgatttataatcctttgggtataaacccagtaatgggattgctgggtcaaatga-tatttctg-gatctg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29682372 104 + 172585720 tgccacagtaaacatgcgtgtgcatgtgtctttacagtagaatgatttataatcctttgggtataaacccagtaatgggattgctgggtcaaatga-tttttctg-------
i rheMac8.chr4             I 35059 C 0
s macFas5.chr4             29345028 104 - 170955103 tgccacagtaaacatgcgtgtgcatgtgtctttacagtagaatgatttataatcctttgggtataaacccagtaatgggattgctgggtcaaatga-tttttctg-------
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            28601174 105 -  71996105 tgccacagtaaacatgcgtgtgcatgtgtctttacagtagaatgatttataatcctttgggtataaacccagtaatgggattgctgggtcaaatgattttttctg-------
i chlSab2.chr17            I 6426 C 0
s manLeu1.NW_012099655v1      49264 104 -    352859 tgccacagtaaacatgcgtgtgcatgtgtctttacagtagaatgatttataatcctttgggtataaacccagtaatgggattgctgggtcaaatga-tttttctg-------
i manLeu1.NW_012099655v1   I 39054 C 0
s colAng1.NW_012115566v1    2208271 105 -   3067355 tgccacaataaacatacgtgtgcatgtgtctttacagcagaatgatttataatcctttgggtataaacccagtaatgggattgctgggtcaaatga-tttttctgg------
i colAng1.NW_012115566v1   I 40269 C 0
e dasNov3.JH570037           315319 37722 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1671351 7131 -   2232465 I
e cerAty1.NW_012002711v1      42038 38427 +    766320 I
e nomLeu3.chr1a            74365396 17331 + 122973662 I

a score=1400312.000000
s hg38.chr6_GL000254v2_alt   470011 381 +   4827813 gttctagatccttgtggaattgccaccctgtcttccacaatggttgaattaa-ttacactcccaccaacaatgtaaaagcattcctatttctccacatcctctccagcatctgttgtttcctgactttttaatggtcaccattctaactggcgtatgatggaatctcattgtggttttgatttgcgtttctctaatgatgagtgatgatgagcttttttc--atgtttgttggctacataaatgtcttcttttgagaagtgtctgttcatatcatttgcccactttttgatgggg----ttgtttttttcttgtaaatttgtttaagttctttgtagactctggata----ttagccctttgtc----ggatggattgcaaaaa--ttttctcccatt
s panTro5.chr6             29451080 385 + 175400573 gttctagatccttgtggaattgccaccctgtcttccacaatggttgaattaa-ttacactcccaccaacaatgtaaaagcattcctatttctccacatcctctccagcatctgttgtttcctgactttttaatggtcaccattctaactggcgtatgatggaatctcattgtggttttgatttgcgtttctccagtgatgagtgatgatgaacttttttc--atgtttgttggctacataaatgtcttcttttgagaagtgtctgttcatatcctttgcccactttttgatgggg----ttgtttttttcttgtaaatttgtttaagttctttgtagactctggata----ttagccctttgtcagatggatggattgcaaaaa--ttttctcccatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29686879 385 + 173848474 gttctagatccttgtggaattgccaccctgtcttccacaatggttgaattaa-ttacactcccaccaacaatgtaaaagcattcctatttctccacatcctctccagcatctgttgtttcctgactttttaatggtcaccattctaactggcgtatgatggaatctcattgtggttttgatttgcgtttctccagtgatgagtgatgatgaacttttttc--atgtttgttggctacataaatgtcttcttttgagaagtgtctgttcatatcctttgcccactttttgatgggg----ttgtttttttcttgtaaatttgtttaagttctttgtagactctggata----ttagccctttgtcagatggatggattgcaaaaa--ttttctcccatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5477455 385 +   6154872 gttctagatccttgtggaattgccaccttgtcttccacaatggttgaattaa-ttacactcccaccaacaatgtaaaagcattcctatttctccacatcctctccagcatctgttgttttctgactttttaatggtcaccattctaactggcgtatgatagaatctcattgtggttttgatttgcgtttctctaatgatgagtgatgatgagcttttttc--atgtttgttggctacataaatgtcttcttttgagaagtgtctgttcatatccttcgcccactttttgatgggg----ttatttttttcttgtaaatttgtttaagttctttgtagactctggata----ttagccctttgtcagatggatggattgcaaaaa--tattctcccatt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29682476 398 + 172585720 gttctagatccttgaggaatcaccatcctgttttccacaatggttgaattaatttacactcccatcaacagtgtaaaagtgttcctatttctccacatcctctccagcatctgtagtttcctgtctttttaatggtcaccattctaactggcgtgtgacggtatctcattgtggttttgatttgcatttctctaatgaccagggatgatgagcttttttcatatgtctgttggctgcataaatgtcttcttttgaggaatgtctgttcatatccttcgcccactttttgatgtggttgtttgtttttttcttctaaatttgtttaaattctttgtagattctggatattagttagccctttttcaggtgaattgattgcaccaattttttttcccatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29345132 398 - 170955103 gttctagatccttgaggaatcaccatcctgttttccacaatggttgaattaatttacactcccatcaacagtgtaaaagtgttcctatttctccacatcctctccagcatctgtagtttcctgtctttttaatggtcaccattctaactggcgtgtgacggtatctcattgtggttttgatttgcatttctctaatgaccagggatgatgagcttttttcatatgtctgttggctgcataaatgtcttcttttgaggaatgtctgttcatatccttcgcccactttttgatgtggttgtttgtttttttcttctaaatttgtttaaattctttgtagattctggatattagttagccctttttcaggtgaattgattgcaccaattttttttcccatt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      80465 397 +    766320 gttctagatccttgaggaatcaccatcctgttttccacaatggttgaattaatttacactcccatcaacagtgtaaaagtgttcctatttcttcacatcctctccagcatctgtagtttcctgtctttttaatggtcaccattctaactggcgtgcgacagtatctcattgtggttttgatttgcatttctctaatgaccagggatgatgagcttttttcttatgtctgttggctgcataaatgtcttcttttgaggaacgtctgttcgtatcctttgcccactttttgatgtggttgtttgtttttttcttctaaatttgtttaaattatttgcagattctggatattagttagccctttttcaggtgaattgattgcaccaa-tttttttcccatt
i cerAty1.NW_012002711v1   I 38427 C 0
s chlSab2.chr17            28601279 393 -  71996105 gttctagatccttgaggaatcaccatccagttttccacaatggttgaattaatttacactcccatcaacagtgtaaaagtgttcctatttctccacatcctctccagcatctgtagtttcctgtctttttaatggtcaccattctaactggcgtgcgacggtatctcattgtggttttgatttgcatttctctaatgaccagggatgatgagcttttttcatatgtctgttggctgcataaatgtcttcttttgaggaatgtctgttcgtatccttcgcccactttttgatgtggttgtttgtttttttcttctaaatttgtttaaattctttgtagattctggata----ttagccctttttcaggtgaattgattgcaccaa-tttttttcccatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      49368 393 -    352859 gttctagatccttgaggaatcaccatcctgtttttcacaatggttgaattaatttacacacccatcaacagtgtaaaagtgttcctatttctccacatcctctccagcatctgtagtttcctgtctttttaatggtcaccattctaactggcgtgcgacggtatctcattgtggttttgatttgcatttctctaatgaccaggaatgatgagcttttttcatatgtctgttggctgcataaatgtcttcttttgaggaatgtctgttcgtatccttcgcccactttttgatgtgg----ttgtttttttcttctaaatttgtttaaattctttgtagattctggatattagttagccctttttcaggtgaattgattgcaccaa-tttttttcccatt
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2208376 395 -   3067355 -ttctagatccttgatgaatcaccaccctgttttccacaatggttgaattaatttacactcccaccaacagtataaaagtgttcctatttctccacatcctctccagcatctgtagtttcctgtctttttaatggtcaccattctaactggcgtgtgatggtatctcattgtggttttgatttgcatttctctaatgaccagggatgatgagcttttttcatatgtttgttgggtgcataaatgtcttcttttgaggagtgtctcttcatacccttcacccacattttgatgtggttgtttgttttttacttctaaatttgtttaaattctttgtagattctggatattagttagcccttttttaggtgaattaattgcaccaa--ttttttcccatt
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037           315319 37722 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1671351 7131 -   2232465 I
e nomLeu3.chr1a            74365396 17331 + 122973662 I

a score=2225296.000000
s hg38.chr6_GL000254v2_alt   470392 475 +   4827813 ctgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtctattttggcttttgttgctattgcttttggtgttttagtcatgaagtctttgtccatgcctatgtcctgaatggtattgcctaggttttcttctaaatcttttatggttttaggttttatgtttaagtctttaatccatcttgagttaatttttgtataaagtgtaaggaagtggtccagtttctgttttctgcatgtggctagccagttttcccaacaccatttattaaatagggaatcttttccacattgcttgtttttttcaggttcatggaagatcagatggttgtagatgtgtggtgttatttctgaggcctctgttctgttccattggtctatatatttgttttggtaccagtaccatgctgttttTAAAACCTG-TTTTATAAAAAAGGg
s panTro5.chr6             29451465 475 + 175400573 ctgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtctattttggcttttgttgctattgcttttggtgttttagtcatgaagtctttgtccatgcctatgtcctgaatggtattgcctaggttttcttctaaatcttttatggttttaggttttatgtttaagtctttaatccatcttgagttaatttttgtataaagtgtaaggaagtgttccagtttctgttttctgcatgtggctagccagttttcccaacaccatttattaaatagggaatcttttccacattgcttgtttttttcgggttcattgaagatcagatggttgtagatgtgtggtgttatttctgaggcctctgttctgttccattggtctatatatttgttttggtaccagtaccatgctgttttTAAAACCTG-TTTTATAAAAAAGGg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29687264 475 + 173848474 ctgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtctattttggcttttgttgctattgcttttggtgttttagtcatgaagtctttgtccatgtctatgtcctgaatggtattgcctaggttttcttctaaatcttttatggttttaggttttatgtttaagtctttaatccatcttgagttaatttttgtataaagtgtaaggaagtgttccagtttctgttttctgcatgtggctagccagttttcccaacaccatttattaaatagggaatcttttccacattgcttgtttttttcgggttcattgaagatcagatggttgtagatgtgtggtgttatttctgaggcctctgttctgttccattggtctatatatttgttttggtaccagtaccatgctgttttTAAAACCTG-TTTTATAAAAAAGGg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5477840 475 +   6154872 ctgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtctattttggcttttgttgctattgcttttggtgttttagtcatgaagtctttgtccatgcctatgtcctgaatggtattgcctaggttttcttctaaatcttttatggttttaggttttatgtttaagtctttaatccatcttgagttaatttttgtataaggtgtaaggaagtggtccagtttctgttttctgcatgtggctagccagttttcccaacaccatttattaaatagggaatcttttccacgttgcttgtttttttcgggttcattgaagatcagatggttgtagatgtgtggtgttatttctgaggcctctgttctgttccattggtctatatatttgttttggtaccagtaccatgctgttttTAAAACCTG-TTTTATAAAAAAGGg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74382727 475 + 122973662 ctgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttagttgaattagatcccatttgtctattttggcttttgtcgctattgcttttggtgttttagtcatgaagtctttgcccatgcctatgtcctgaatggtattgcctaggttttcttccaaatcttttctggttttaggttttatgtttaagtctttaatccatcttgagttaatttttgtataaagtgtaaggaagtggtccagtttctgttttctgtatatggctagccagttttcccaacaccatttgttaaatagggaatcctttccacattgcttgtatttttcaggtttgttgaagatcagatggttgtagatgtgtggtgttatttctgaggcctctgttctgttccattggtctatatatttgttttggtaccagtaccatgctgttttTAAAATCTG-TTTTATAAAAAAGGg
i nomLeu3.chr1a            I 17331 C 0
s rheMac8.chr4             29682874 474 + 172585720 ctgtaggttgcctgttcactctgatgatagtttcttttgctgtacagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtctttgtccatgcctatgtcctgaatggtattacctagattttcttctagggttttta-ggttttaggttttacatttaagtctttaatccatattgagttaatttttgtataagatgtaaggaaggggtccagtttctgttttctgcctatggctagccagttttcccaacactatttattaaatagagaatcctttccacattgcttg-ttttttcagggtccttgaagatcagatgtttgtagatgtgtggtgttatttctgaggcctctgttctgttccattggtctgtatatttgttttggtaccagtactatattgttttTAAAACCTGTTTTTATTAAAAAGag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29345530 473 - 170955103 ctgtaggttgcctgttcactctgatgatagtttcttttgctgtacagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtctttgtccatgcctatgtcctgaatggtattacctagattttcttctagggttttta-ggttttaggttttacatttaagtctttaatccatattgagttaatttttgtataagatgtaagg-gggggtccagtttctgttttctgcctatggctagccagttttcccaacactatttattaaatagggaatcctttccacattgcttg-ttttttcagggtccttgaagatcagatgtttgtagatgtgtggtgttatttctgaggcctctgttctgttccattggtctgtatatttgttttggtaccagtactatattgttttTAAAACCTGTTTTTATTAAAAAGag
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      80862 473 +    766320 ctgtaggttgcctgttcactctgatgatagtttcttttgctgtacagaagctctttagtttaattagatcccatttgccaattttggcttttgttgccattgcttttggtgttttagtcatgaagtctttgtccatgcctatgtcctgaatggtattacctagattttcttctagggctttta-ggttttaggttttacatttaagtctttaatccatattgagttaatttttgtataagatgtaaggaaggggtccagtttctgttttctgcctatggctagccagttttcccaacaccatttattaaatagggagtcctttccacattgcttg-ttttttcagggtcattgaagatcagatgtttgtagatgtgtggtgttatttctgaggcctctgttctgttccattggtctgtatatttgttttggtaccagtaccatattgttttTAAAACCTG-TTTTATTAAAAAGag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28601672 474 -  71996105 ctgtagattgcttgttcactctgatgatagtttcttttgctgtacagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtctttgtccatgcctatgtcctgaatggtattacctagattttcttctagggtttttatggttttaggttttacatttaagtctttaatccatattgagttaatttttgtataagatgtaaggaaggggtccagtttctgttttctgcctatggctagccagttttcccaacaccatttattaaatagggaatcctttccacattgcttg-ttttttcagggtcattgaagatcagatgtttgtagatgtgtggtgttatttctgaggcctctgttctcttccattggtctgtatatttgttttggtaccagtaccatattgttttTAAAACCTG-TTTTATTAAAAAGag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      49761 473 -    352859 ctgtaggttgcctgttcactctgatgatagtttcttttgctgtacagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtctttgcccatgcctatgtcctgaatggtattacctagtttttcttctagggttttta-ggttttaggttttacatttaagtctttaatccatattgagttaatttttgtataagatgtaaggaaggggtccagtttctgttttctgcctatggctagccagttttcccaacaccatttattaaatagggagtcctttccacattgcttg-ttttttcagggtcattgaagatcagatgtttgtagatgtgtggtgttatttctgaggcctctgttctgttccattggtctgtatatttgttttggtaccagtaccatattgttttTAAAACCTG-TTTTATTAAAAAGag
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2208771 460 -   3067355 ctgtaggttgcctgttcactctgatgatag--------------cagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtctttgtccatgcctatgtcctgaatggtattgcctagattttcttctagggttttta-ggttttaggttttacatttaagtcttcaatccatattgagttaatttttgtataagatgtaaggaaggggtctagtttctgttttctgcatatggctagccagttttcccaacaccatttattaaatagggaatcctttccacattgcttgtttttttcagggtcattgaagatcagatgtttgtagatgtatggtgttatttctgaggcctctgttctgttccattggtctgtatatttgttttggtaccagtgccatattgttttTAAAACCTG-TTTTATTAAAAAGag
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037           315319 37722 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1671351 7131 -   2232465 I

a score=795211.000000
s hg38.chr6_GL000254v2_alt   470867 154 +   4827813 aattattgtgagacttcaatgagccagtgcatacacatctagattttggacagtgcctgaaacataggaaggatctaatgaatgtaagccagttatcattAATAGTatgattagcattaatcattagtaataatcattactcataatattgagt
s panTro5.chr6             29451940 154 + 175400573 aattattgtgagacttcaatgagccagtgcatacacatctagattttggacagtgcctgaaacataggaaggatctaatgaatgtaagccagttatcattAATGGTatgattagcattaatcattagtaataatcattactcataatattgagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29687739 154 + 173848474 aattattgtgagacttcaatgagccagtgcatacacatctagattttggacagtgcctgaaacataggaaggatctaatgaatgtaagccagttatcattAATGGTatgattagcattaatcattagtaataatcattactcataatattgagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5478315 153 +   6154872 aattattgtgagacttcaatgagccagtgcatacacatctagattttggacagtgcctgaaacataggaaggatctaatgaatgtaagccagttatcattAATAGTATGATTAGCATTAATCATTAGTAATAAT-ATTACTCATAATATTGAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74383202 154 + 122973662 aattattgtgagacttcaatgatccaatgcatacacatctagattttggacagtgcctgaaacataggaaggatctaatgaatgtaagccagttatcattAATAGTatgattagcattaatcattagtaataatcattactcataatattGAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29683348 154 + 172585720 aattattgtgaggcttcagtgagccagtgcatacacatctggattttggacagtgcctgaaacataggaaggatctaatgaatgtaagccagttatcattAATAGTGTGATTAGcattaatcattagtgataatcattactcataatattgagc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29346003 154 - 170955103 aattattgtgaggcttcagtgagccagtgcatacacatctggattttggacagtgcctgaaacataggaaggatctaatgaatgtaagccagttatcattAATAGTGTGATTAGcattaatcattagtgataatcattactcataatattgagc
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      81335 154 +    766320 aattattgtgaggcttcaatgagccagtgcatacacatctggattttggacagtgcctgaaacataggaaggatctaatgaatgtaagccagttatcattAATAGTGTGATTAGcattaatcattagtgataatcattactcataatattgagc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28602146 154 -  71996105 aattattatgaggcttcaatgagccagtgcatacacatctggattttggacagtgcctgaaacagaggaaggatctaatgaatgtaagccagttatcattAATAGTGTGATTAGcattaatcattagtgataatcattactcataatattgagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      50234 154 -    352859 aattattgtgaggcttcaatgagccagtgcatacacatctggattttggacagtgcctgaaacataggaaggatctaatgaatgtaagccagttatcattAATAGTGTGATTAGcattaatcattagtgataatcattactcataatattgagc
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2209231 154 -   3067355 aattattgtgaggcttcagtgagccagtgcatacacatctggattttggacagtgcttgaaacataggaaggatctaatgaatgtaagccagttatcattAATAGTGTGATTAGcattaatcattagtgataatcactactcataatattgagc
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037           353041 122 -    859332 AGTTACTGCCAAGCGCACATGAGTCACTGCACTCACCTCTGAActcaggacagtgcctgaaccataaaaagtgtttaatgaatgtgaccaggttatcattAA---------------------------ACAAT-AATACTC----CAGCAAGC
i dasNov3.JH570037         I 37722 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1671351 7131 -   2232465 I

a score=415710.000000
s hg38.chr6_GL000254v2_alt   471021 82 +   4827813 cattaTTTCAGCTTGTCATGTGTATGAAAAAGCAGAGATATAATTTATTATTGGTAATCCCAGTGCTTATTGTAATTTTATA
s panTro5.chr6             29452094 82 + 175400573 cattaTTTCAGCTTGTCATGTGTATGAAAAAGCAGAGATATAATTTATTATTGGTAATCCCAGTGCTTATTGTAATTTTATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29687893 82 + 173848474 cattaTTTCAGCTTGTCATGTGTATGAAAAAGCAGAGATATAATTTATTATTGGTAATCCCAGTGCTTATTGTAATTTTATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5478468 81 +   6154872 CATTATTTCAGCTTGTCATGTGTATGAAAAAGCAGAGATATAATTTATTATTGGTAAT-CCAGTGCTTATTGTAATTTTATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74383356 82 + 122973662 TACTATTTCAGCTTGTCATGTGTATGAAAAAGCAGAGATATAATTTATTATTGGTAATCCCAGTGCTTATTGTAATTTTATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29683502 79 + 172585720 cattaTTTCAGCTTGTCATGTATATGAGAAAGCAGAGATATAATTTATTATTGGTGGTCCCAGTGTTTATTGTAATTTT---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29346157 79 - 170955103 cattaTTTCAGCTTGTCATGTATATGAGAAAGCAGAGATATAATTTATTATTGGTGGTCCCAGTGTTTATTGTAATTTT---
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      81489 79 +    766320 cattaTTTCAGCTTGTCATGTATATGAGAAAGCAGAGATATAATTTATTATTGGTGGTACCAGTGTTTATTGTAATTTT---
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28602300 79 -  71996105 cattaTTTCAGCTTGTCATGTATATGAGAAAGCAGAGATATAATTTATTATTGGTGGTCCCAGTGTTTATTGTAATTTT---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      50388 79 -    352859 cattaTTTCAGCTTGTCATGTATATGAGAAAGCAGAGATATAATTTATTATTGGTGGTCCCAGTGTTTATTGTAATTTT---
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2209385 82 -   3067355 cattaTTTCAGCTTGTCATATATATGAGAAAGCAGAGATATAATTTATTATTGGTGGTCTCAGTGTTTATTGTAATTTTATA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1678482 78 -   2232465 TATCACCTCAGCTTGTGTAGTATATGAGAAAACAG----ACAATTTACTTTTGGTGGGCCAAGTGattattataattttata
i otoGar3.GL873742         I 7131 C 0
s dasNov3.JH570037           353163 71 -    859332 -------CCAGCTTG-CATGCAGGTGAGGAAACAAA---CCAGCTCACTTTTGGTGGGCACAGAACTTATTACAAGCCCTGG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I

a score=15664.000000
s hg38.chr6_GL000254v2_alt   471103 3 +   4827813 ATA
s panTro5.chr6             29452176 3 + 175400573 ATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29687975 3 + 173848474 ATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5478549 3 +   6154872 ATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74383438 3 + 122973662 ATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29683581 3 + 172585720 ATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29346236 3 - 170955103 ATA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      81568 3 +    766320 ATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28602379 3 -  71996105 ATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      50467 3 -    352859 ATA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2209467 3 -   3067355 ATA
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037           353234 3 -    859332 AAA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1678560 0 -   2232465 C

a score=2129659.000000
s hg38.chr6_GL000254v2_alt   471106 405 +   4827813 TTATGATATGAAATGATTAAATGTATATGTCA---CTTCTTTGTTTCTAGCATAGTGCAGAGAACATAGTTTCCTCATAAGTGAAAGTCAAGTCAATAGT-----AGGAGATATTTGGTTATCTGAAGGGCATAGCTGATAACAGTAATTGACTCAGCAGCTCTTCCTTCTTATTCTATTATTTTCACAGCCTCTACTCCTCTTCACCTTTTATATGGCACTGGTGCCAGTTCATTTATCAAttcttttttttttttttttttttGCATTATCAGTAA-ATAAACTTATCCCTTGACAAGAGAATGGTGATTC------CACTGTTATCTTAAACCTTTTCTTATTTATGCATCCTGCATATATC-AAAAGAAACCTCAAATACCACTGATTCTTTTTC-AATT-AAAAAATTCCCACTGAC-T
s panTro5.chr6             29452179 400 + 175400573 TTATGATATGAAATGATTAAATGTATATGTCA---CTTCTTTGTTTCTAGCATAGTGCAGAGAACATAGTTTCCTCATAAGTGAAAGTCAAGTCAATAGT-----AGGAGATATTTGGTTATCTGAAGGGCATAGCTGATAACAGTAATTGACTCAGCAGCTCTTCCTTCTTATTCTATTATTTTCACAGCCTCTACTCCTCTTCACCTTTTATATGGCACTGGTGCCAGTTCATTTATCAATTC-----TTTTTTTTTTTTTTTGCATTATCAGTAA-ATAAACTTATCCCTGGACAAGAGAATGGTGATTC------CACTGTTATCTTAAACCTTTTCTTATTTATGCATCCTGCATATATC-AAAAGAAACCTCAAATACCACTGATTCTTTTTC-AATT-AAAAAATTCCCACTGAC-T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29687978 398 + 173848474 TTATGATATGAAATGATTAAATGTATATGTCA---CTTCTTTGTTTCTAGCATAGTGCAGAGAACATAGTTTCCTCATAAGTGAAAGTCAAGTCAATAGT-----AGGAGATATTTGGTTATCTGAAGGGCGTAGCTGATAACAGTAATTGACTCAGCAGCTCTTCCTTCTTATTCTATTATTTTCACAGCCTCTACTCCTCTTCACCTTTTATATGGCACTGGTGACAGTTCATTTATCAATTC-------TTTTTTTTTTTTTGCATTATCAGTAA-ATAAACTTATCCCTGGACAAGAGAATGGTGATTC------CACTGTTATCTTAAACCTTTTCTTATTTATGCATCCTGCATATATC-AAAAGAAACCTCAAATACCACTGATTCTTTTTC-AATT-AAAAAATTCCCACTGAC-T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5478552 403 +   6154872 TTATGATATGAAATGATTAAATGTATATGTCACTTCTTCTTTGTTTCTAGCATAGTGCAGAGAACATAGTTTCCTCATAAGTGAAAGTCAAGTCAATAGT-----AGGAGATATTTGGTTATCTGAAGAGCATAGCTGATAACAGTAATTGACTCAGCAGCTGTTCCTTCTTATTCTATTATTTTGACAGCCTCTACTCCTCTTCACCTTTTATATGGCACTGGTGCCAGTTCATTTATCAATTC------TTTTTTTTTTTTTTGCGTTATCAGTAA-ATAAACTTATCCCTTAACAAGAGAATGGTGATTC------CACTGTTATCTTAAACCTTTTCTTATTTACGCATCCTGCATATATC-AAAAGAAACCTCAAATACCACTGATTCTTTTTC-AATT-AAAAAATTCCCACTGACTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74383441 394 + 122973662 T-----TATGAAATGATTAAATGTATATGTCACTTCTTCTTTGCTTCCAGCATAGTGCAGAGAACATAGTTTCCTCATAAGTGAAAGTCAAGTCAATAGT-----AGGAGATATTTGGTTATCTGAAGGGCATAGGTGATAACAGTAATCGCCTCAGCAGCTGTTCCTTCTTATTCTATTATTTTCACAGCCTCTACTCCTCTTCACCTTTTATATGGCACTAGTGCCAGTTCATTTATCAATTC----------ATTTTTTTTTGCATTATCAGTAA-ATAAACTTATCCCTTAACAAGAGAATGGTGATTC------CACTGTTATCTTAAACCTTTTCTTATTTATGCATCCTGCATGTATC-AAAAGAAACCTCAAATACCACTGATTCTTTTTCTAATT-AAAAAATTCCCACTGAC-T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29683584 397 + 172585720 TTATGATATGAAATGATTAAATGTATATGTCACTTTTTCTTTGTTTCTAGCATAGTGCAGAGAACATAGCTTTCTCATAAGTGAAAGTCAAGTCAGTAGT-----AGGAGATATTTGGTTATATGAAGGGCATAGGCAATAACAGTAATCGACTCAGCAGCTATTCCTTCTTATTGTATTATTTTCACAGCCTCTACTCCTCTTCACCTTTTATATGGCTCTGGTGCCAGTTCATTTATCAATTC------------CTTTTTCTGCATTATCAGTAA-ATAGACTTATCCCTTGACAAGAGAATGGTGATTC------CACTGTTATCTTAAACCTTTTCCTATTTATGCATTCTGCATGTATC-AAAAGAAACCTCAAATACCACTGAATCTTTTTCTAGTT-AAAAAAATCCCACTGAC-T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29346239 397 - 170955103 TTATGATATGAAATGATTAAATGTATATGTCACTTTTTCTTTGTTTCTAGCATAGTGCAGAGAACATAGCTTTCTCATAAGTGAAAGTCAAGTCAGTAGT-----AGGAGATATTTGGTTATATGAAGGGCATAGGCAATAACAGTAATCGACTCAGCAGCTATTCCTTCTTATTGTATTATTTTCACAGCCTCTACTCCTCTTCACCTTTTATATGGCTCTGGTGCCAGTTCATTTATCAATTC------------CTTTTTCTGCATTATCAGTAA-ATAGACTTATCCCTTGACAAGAGAATGGTGATTC------CACTGTTATCTTAAACCTTTTCCTATTTATGCATTCTGCATGTATC-AAAAGAAACCTCAAATACCACTGAATCTTTTTCTAGTT-AAAAAAATCCCACTGAC-T
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      81571 398 +    766320 TTATGATATGAAATGATTAAATGTATATGTCGCTTTTTCTTTGTTTCTAGCATAGTGCAGAGAACATAGCTTTCTCATAAGTGAAAGTCAAGTCAGTAGT-----AGGAGATATTTGGTTATATGAAGGGCATAGGCAATAACAGTAATCGACTCAGCAGCTATTCCTTCTTATTGTATTATTTTCACAGCCTCTACTCCTCTTCACCTTTTATGTGGCTCTGGTGCCAGTTCATTTATCAATTC------------CTTTTTTTGCATTATCAGTAA-ATAGACTTATCCCTTGACAAGAGAATGGTGATTC------CACTGTTATCTTAAACCTTTTCCTATTTATGCATTCTGCATGTATC-AAAAGAAACCTCAAATACCACTGAATCTTTTCCTAGTTAAAAAAAATCCCACTGAC-T
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28602382 397 -  71996105 TCATGATATGAAATGATTAAATGTATATGTCACTTTTTCTTTGTTTCTAGCATAGTGCAGAGAACATAGCTTTCTCATAAGTGAAAGTCAAGTCAGTAGT-----AGGAGATATTTGGTTATATGAAGGGCATAGGCAATAACAGTAATCGACTCAGCAGCTATTCCTTCTTATTGTTTTATTTTCACAGCCTCTACTCCTCTTCACCTTTTATGTGGCTCTGGTGCCAGTTCATTTATCAATTC------------CTTTTTTTGCATTATCAGTAA-ATAGACTTATCCCTTGACAAGAGAATGGTGATTC------CATTGTTATCTTAAACCTTTTCCTATTTATGCATTCTGCATGTATC-AAAAGAAACCTCAAATACCACTGAATCTTTTTCTAGTT-AAAAAAATGCCACTGAC-T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      50470 397 -    352859 TTATGATATGAAATGATTAAATGTATATGTCGCTTTTTCTTTGTTTCTAGCATAGTGCAGAGAACATAGCTTTCTCATAAGTGAAAGTCAAGTCAGTAGT-----AGGAGATTTTTGGTTATATGAAGGGCATAGGCAATAACAGTAATCGACTCAGCAGCTATTCCTTCTTATTGTATTATTTTCACAGCCTCTACTCCTCTTCACCTTTTATGTGGCTCTGGTGCCAGTTCATTTATCAATTC------------CTTTTTTTTCATTATCAGTAA-ATAGACTTATCCCTTGACAAGAGAATGGTGATTC------CACTGTTATCTTAAACCTTTTCCTATTTATGCATTCTGCATGTATC-AAAAGAAACCTCAAATACCACTGAATCTTTTTCTAGTT-AAAAAAATCCCACTGAC-T
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2209470 397 -   3067355 TTATGACATGAAATGATTAAATGTATATGTCACTTTTTCTTTGTTTCTAGCATGGTGCAGAGAACATAGCTTTCTCATAAGTGAAAGTTAAGTCAGTAGT-----AGGAGATATTTGGTTATCTGAAGGGCATAGGCGATAACAGTAATTGACTCAGCAGCTGTTCCTTCTTATTCTATTATTTTCACAGCCTCTATTCCTCTTCACCTTTTATGTGGCTCTGGTGCCAGTTCATTTATCAATTC------------CTTTTTTTGCTTTATCAGTAA-ATAGACTTATCCCTTGACAAGAGAATGGTGATTC------CACTGTTATCTTCAACCTTTGCCTATTTATGCATCCTGCATGTATC-AAAAGAAACCTCAAATACCACTGAATCTTTTTCTAGTT-AAAAAAATCCCACTGAC-T
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1678560 377 -   2232465 ttataatatG--------AAATGCATATGGCACCTTTTCTTTGCTACTGGCATAATGCTGAGAACATAGTTTTCTAGTAAATGTAAGTCAAGTCAATAGCTAAGAAGGAACTATTTGGTTATCCGTAGGGGATGGGAGATAAGGGGACTT-ATTCAACAGCTATTTTTTCTGCTCCTATTTTTTTCACATCCTCTATTTTTCTCCACATTTTATATGGCACTGGTTCCAGCTTATCTACTAATTC-------------TCCTTATACATTATCAGAAA-ATGAGCTGTCCCCTTGGCAAGAATGTGTTGATTCCAAAAACACTATCACATTAG--CTTTTCATATTTATATTTCCTACATGGATCTTAAAAAAACCTTAAATCCCACTGATTCTTTTTA-AAT---------------------
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037           353237 384 -    859332 GAAAAACATGAAAGAATAAAATGCATAT-CCA---CTTCTTTGTTGCTAGCATAAT-TTGGGAATATAGTTTTCTGGTAAATAGAAGTCAGGTCAATGGT-----CATTGGCAGTGTGCTATTTAAGGGGTGTGGGACATTAGAGGATTGCATTCAGCTATCTTTCCTTCTG-------TATTTCCATATCCACCACTCTTCCTCACAGCTGGTATGGCACTGATACCAGCTCATCCACCAAACC-------------CTCTCTTACATGAGCAGAAATGTGAACTTACCCATAACAACGAGCATGTTCATTC------CACTGTTATCCCAGTCCTC--CCTCTTTATATATCCTACACAAACT-AAAAGAAACCTTAAATCCCACTAATTCTTCTTCCTCTTAAAAAAAATTCCATGGAC-A
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I

a score=1019172.000000
s hg38.chr6_GL000254v2_alt   471511 159 +   4827813 -TTTTTATGTGTGGAGATATAATAAGCAAA-TTTTCATTCAAAAGTTTCAAAGGATAAGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTAAAAATACTTGATATTTATTTCAAGGTTCCCTGGAAACAAATTGGACATTCTGATTACTTAACATGATGCAACCCAGAGGTAA
s panTro5.chr6             29452579 159 + 175400573 -TTTTTATGTGTGGAGATATAATAAGCAAA-TTTTCATTCAAAAGTTTCAAAGGATAAGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTAAAAATACTTGATATTTATTTCAAGGTTCCCTGGAAACAAATTGGACATTCTGATTACTTAACATGATGCAACCCAGAGGTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29688376 159 + 173848474 -TTTTTATGTGTGGAGATATAATAAGCAAA-TTTTCATTCAAAAGTTTCAAAGGATAAGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTAAAAATACTTGATATTTATTTCAAGGTTCCCTGGAAACAAATTGGACATTCTGATTACTTAACATGATGCAACCCAGAGGTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5478955 159 +   6154872 -TTTTTATGTGTGGAGATATAATAAGCAAA-TTTTCATTCAAAAGTTTCAAAGGATAAGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTAAAAATACTTGATATTTATTTCAAGGTTCCCTGGAAACAAATTGGACATTCTGATGACTTAACATGATGCAACCCAGAGGTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74383835 157 + 122973662 -TTTTTATGTGTGGAGATATAATAAGCAAA-TTTTCATTCAAAAGTTTCGAAGGATAAGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTAAAAATACTTGATATTTATTTCAAGGTTCCCTGGAAACAATTTGGACAT--TGATTATTTAACATGATGCAACCCAGAGGTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29683981 159 + 172585720 -TTTTAATGTGTGGAAATATAATAAGCAAA-TGTTCATTCAAAAGTTTCAAAGGATAAGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTAAAAATACTTGATATGTATTTCAAGGTTCCCTGGAAACAAATTGGACATTCTGATTATTTAACATGATGCAACCCAGAGGTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29346636 159 - 170955103 -TTTTAATGTGTGGAAATATAATAAGCAAA-TGTTCATTCAAAAGTTTCAAAGGATAAGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTAAAAATACTTGATATGTATTTCAAGGTTCCCTGGAAACAAATTGGACATTCTGATTATTTAACATGATGCAACCCAGAGGTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2203513 159 -   2996164 -TTTTTATGTACGGAGATATAATGAGCAAA-CCTTCATTCAAAAGGCTGAAAGGATACGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTGAAAATACTTGATATTGATTTCAAGGTTCTCAGGAAACAAATTGGGCATTCTGATTATTTAACATGATGTCACTCAGAGGCCG
i macNem1.NW_012011356v1   N 0 C 0
s cerAty1.NW_012002711v1      81969 160 +    766320 -TTTTAATGTGTGGAAATATAATAAGCAAATTGTTCATTCAAAAGTTTCAAAGAATAAGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTAAAAATACTTGATATGTATTTCAAGGTTCCCTGGAAACAAATTGGACATTCTGATTATTTAACATGATGCAACCCAGAGGTAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28602779 159 -  71996105 -TTTTAATGTGTGGAAATATAATAAGCAAA-TGTTCATTCAAAAGTTTCAAAGGATAAGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTAAAAATACTTGATATGTATTTCAAGGTTCCCTGGAAACAAATTGGACATTCTGATTATTTAACATGATGCAACCCAGAGGTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      50867 159 -    352859 -TTTTAATGTGTGGAAATATAATAAGCAAA-TGTTCATTCAAAAGTTTCAAAGGATAAGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAATCACTAAAAATACTTGATATGTATTTCAAGGTTCCCTGGAAACAAACTGGACATTCTGATTATTTAACATGATGCAACCCAGAGGTAA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2209867 159 -   3067355 -TTTTCATGTGTGGAAATATAATAAGCAAA-TGTTCATTCAAAAGTTTCAAAGGATAAGAAGG-------------------------------------------------------------------------------------------------ATTTTTGGAGTCACTAAAAATACTTGATATGTATTTCAAGGTTCCCTGGAAACAAATTGGACATTCTGATTATTTAACATGATGCAACCCAGAGGTAA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1678937 150 -   2232465 ----------ATGGCGATATAATAGGCACA-CATTCATTCAAGGGAGTGAAAAGATAAGTAGG-------------------------------------------------------------------------------------------------ATTGTTAGAGTCACTGAAAATACTTGACATTTATTTCAAGGATCCCAGGAAATAAACTGGGCACTGTGGTTATTTAATGTGATGCAACCCAGAGACAG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037           353621 242 -    859332 GATTTTAAGTGTGGAGGTTGAATGGACAAA-TGGTTATTCAAAGGG-TGAGAGGATAAAAAAGTATTTGGATTgggaacagatgtagctcagtatgttgaggccctgcttcccatgtatgaggtcctgggctcaatccccagtaactcttaaaaaaaaGTATCTGTGGAATCACTTAAAATCCTTGAGATTTATGACAAGGTTTCCAGGAACC------------TTGATTATTTCACGTGATATAAAC--AGGGCAG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I

a score=52848.000000
s hg38.chr6_GL000254v2_alt   471670 11 +   4827813 TGATGTAGGTT----
s panTro5.chr6             29452738 11 + 175400573 TGATGTAGGTT----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29688535 11 + 173848474 TGATGTAGGTT----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5479114 11 +   6154872 TGATGTAGGTT----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74383992 11 + 122973662 TGATGTAGGTT----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29684140 11 + 172585720 TGATGTAGGTG----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29346795 11 - 170955103 TGATGTAGGTG----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2203672 11 -   2996164 GGATGTAGGTG----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      82129 11 +    766320 TGATGTAGGTG----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28602938 11 -  71996105 TGATGTAGGTG----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      51026 11 -    352859 TGATGTAGGTG----
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2210026 11 -   3067355 TGATGTATGTA----
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037           353863 11 -    859332 ----GTATGTGGTTC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1679087  0 -   2232465 C

a score=916621.000000
s hg38.chr6_GL000254v2_alt   471681 137 +   4827813 AGATGATCTTGAAAGACCCTTCCCAATCATGGTAACATAATTCTCTGTGGTAGACACCACTCGCCTTTATTCTAAGTGTCCTAGAGATATCCATGCCT---TTCTTTGTGTTGTGTTTC-AAGGAAGTCTGGTGCAAAGAC----
s panTro5.chr6             29452749 137 + 175400573 AGATGATCTTGAAAGACCCTTCCCAATCATGGTAACATAATTCTCTGTGGTAGACACCACTCGCCTTTATTCTAAGTGTCCTAGAGATATGCATGCCT---TTCTTTGTGTTGTGTTTC-AAGGAAGTCTGGTGCAAAGAC----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29688546 137 + 173848474 AGATGATCTTGAAAGACCCTTCCCAATCATGGTAACATAATTCTCTGTGGTAGACACCACTCGCCTTTATTCTAAGTGTCCTAGAGATATGCATGCCT---TTCTTTGTGTTGTGTTTC-AAGGAAGTCTGGTGCAAAGAC----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5479125 137 +   6154872 AGATGATCTTGAAAGACCCTTCCCAATCATGGTAACATAATTCTCTGTGGTAGACACCACTCGCCTTTATTCTAAGTGTACTAGAGATATCCATGCCT---TTCTTTGTGTTGTGTTTC-AAGGAAGTCTGGTGCAAAGAC----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74384003 137 + 122973662 AGATGATCTTGAAAGACCCTTCCCAATCATGGTAACATAATTCTCTGTGGTAGACACTACTCGCCTTTATTCTAAGTGTCCTAGAGATATCCATGCCT---TTCTTTGTGTTGTGTTTT-AAGGAAGTCTGGTGCAAAGAC----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29684151 137 + 172585720 AGATGATCTTGAGAGACCCTTCCCAACCATGGTAACATAATTCTCTGTGGTAGACACCACTTGCCTTTATTCTAAGTGTCCAAGAGTTATCCATGCCT---TTCTTTGTGCTGTGTTTC-AAGGAAGTCTGGTCCAAAGAC----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29346806 137 - 170955103 AGATGATCTTGAGAGACCCTTCCCAACCATGGTAACATAATTCTCTGTGGTAGACACCACTTGCCTTTATTCTAAGTGTCCAAGAGTTATCCATGCCT---TTCTTTGTGCTGTGTTTC-AAGGAAGTCTGGTCCAAAGAC----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2203683 138 -   2996164 AGATGTTCTTGAGAGATCCTTCCCACTCATGGTAATATAATTCACTGTAGTAGACGCCACTCACCTTTTTTCTAAATGTCCAAGAGATATTCACGCCT---TTCTTTGTGTTGTGTTTCAAAGGAAGTCTGGTTCAAAGAC----
i macNem1.NW_012011356v1   C 0 I 379
s cerAty1.NW_012002711v1      82140 137 +    766320 AGATGATCTTGAGAGACCCTTCCCAACCATGGTAACATAATTCTCTGTGGTAGACACCACTTGCCTTTATTCTAAGTGTCCAAGAGATATCCATGCCT---TTCTTTGTGCTGTGTTTC-AAGGAAGTGTGGTCCAAAGAC----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28602949 137 -  71996105 AGATGATCTTAAGAGACCCTTCCCAACCATGGTAACATAATTCTCTGTGGTAGACACCACTTGCCTTTATTCTAAGTGTCCAAGAGATGTCCATGCCT---TTCTTTGTGCTGTGTTTC-AAGGAAGTCTGGTCCAAAGAC----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      51037 137 -    352859 AGATGATCTTGAGAGACCCTTCCCAACCATGGTAACATAATTCTCTGTGGTAGACACCACTTGCCTTTATTCTAAGTGTCCAAGAGATACCCATGCCT---TTCTTTGTGCTGTGTTTC-AAGGAAGTGTGGTCCAAAGAC----
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2210037 137 -   3067355 AGATGATCTTGAGAGACCCTTCCCAACCATGGTAACGTAATTCTCTGTGGTAGACACCACTTGCCTTTATTCTAAGTGTCCAAGAGATATCCATGCCT---TTCTTTGTGTTGTGTTTC-AAGGAAGTCTGGTGCAAAGAC----
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1679087 141 -   2232465 GGATGGTCTTTAGAGACCATTCCCAGTCATGGGAACCTAACTGTCTATAACAGACACCACTCACCTTTTCTCTAAGTGTCTAAGAAATATCCATGCATTTGTTCTTTGTGCTGTGTTTCAAAGGAAGTCTGATCCAAAGAC----
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037           353874 117 -    859332 AGATGTTCCTGAATGACGTTGACCCATCA-GGTGACACAATCCTCCACAGTGGACACCACTAACCTCCTTTCTAAGAGTCACAGCGATATCCATGCCT---TTCT---------------GGGG---------CCAAAGACAGGC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I

a score=21366.000000
s hg38.chr6_GL000254v2_alt   471818 4 +   4827813 TGAT
s panTro5.chr6             29452886 4 + 175400573 TGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29688683 4 + 173848474 TGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5479262 4 +   6154872 TGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74384140 4 + 122973662 TCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29684288 4 + 172585720 TGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29346943 4 - 170955103 TGAT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      82277 4 +    766320 TGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28603086 4 -  71996105 TGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      51174 4 -    352859 TGAT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2210174 4 -   3067355 TGAT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1679228 4 -   2232465 AGAT
i otoGar3.GL873742         C 0 I 5
s dasNov3.JH570037           353991 4 -    859332 TGAG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e macNem1.NW_012011356v1    2203821 379 -   2996164 I

a score=96404.000000
s hg38.chr6_GL000254v2_alt   471822 18 +   4827813 ACATGCAATGATGTTTTG
s panTro5.chr6             29452890 18 + 175400573 ACATGCAATGATGTTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29688687 18 + 173848474 ACATGCAATGATGTTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5479266 18 +   6154872 ACATGCAATGATGTTTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74384144 18 + 122973662 ACATGCAATGATGTTTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29684292 18 + 172585720 ACATGCAATGATGCTTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29346947 18 - 170955103 ACATGCAATGATGCTTTG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      82281 18 +    766320 ACATGCAATGATGCTTTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28603090 18 -  71996105 ACATGCGATGATGCTTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      51178 18 -    352859 ACATGCAATGATGCTTTG
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2210178 18 -   3067355 ACATACAATGATGTTTTG
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037           353995 18 -    859332 CAATGCAATGACTTTTTG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1679232  5 -   2232465 I
e macNem1.NW_012011356v1    2203821 379 -   2996164 I

a score=618767.000000
s hg38.chr6_GL000254v2_alt   471840 105 +   4827813 AGCTTTCAACTCTTTTGCCATTCTGACTCAACTACCTTTTG-CCCACAGATTGAGAATAAAATTATCATGTATCTTGCACTGCCTTAAGAACATATAA-GTAAAAAT
s panTro5.chr6             29452908 105 + 175400573 AGCTTTCAACTCTTTTGCCATTCTGACTCAACTACCTTTTG-CCCACAGATTGAGAATAAAATTATCATGTATCTTGCACTGCCTTAAGAACATATAA-GTAAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29688705 105 + 173848474 AGCTTTCAACTCTTTTGCCATTCTGACTCAACTACCTTTTG-CCCACAGATTGAGAATAAAATTATCATGTATCTTGCACTGCCTTAAGAACATATAA-GTAAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5479284 105 +   6154872 AGCTTTCAACTCTTTTGCCATTCTGACTCAACTACCTTTTG-CCCACAGATTGAGAATAAAATTATCATGTATCTTGCACTGCCTTAAGAACATATAA-GTAAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74384162 105 + 122973662 AGCTTTCAACTCTTTTGCCATTCTGACTCAACTACCTTTTG-CCCACAGATTGAGAACAAAATTATCATGTATCTTGCACTGCCTTAAGAACATATAA-ATAAAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29684310 105 + 172585720 AGCTTTCAACTCTTTTGCCATTCTGACTCAACTACCTTTTG-CCCACAGATTGAGAATAAAATTATAATGTATCTTGCACTGCCTTAAGAATACGTAA-GTAAAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29346965 105 - 170955103 AGCTTTCAACTCTTTTGCCATTCTGACTCAACTACCTTTTG-CCCACAGATTGAGAATAAAATTATAATGTATCTTGCACTGCCTTAAGAATACGTAA-GTAAAAAT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      82299 105 +    766320 AGCTTTCAACTCTTTTGCCATTCTGACTCAACTACCTTTTG-CCCACAGATTGAGAATAAAATTATAATGTATCTTGCACTGCCTTAAGAATATATAA-GTAAAAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28603108 105 -  71996105 AGCTTTCAACTCATTTGCCACTCTGACTCAGCTACCTTTTG-CCCACAGATTGAGAATAAAATTATAATGTATCTTGCACTGCCTTAATAATATATAA-GTAAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      51196 105 -    352859 AGCTTTCAACTCTTTTGCCATTCTGACTCAACTACCTTTTG-CCTACAGATTGAGAATAAAATTATAATGTATCTTGCACTGCCTTAAGAATATATAA-GTAAAAAT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2210196 105 -   3067355 AGCTTTCAACTCTTTTGCCATTCTGACTCAACTACCTTTTG-CCAACGGATTGAGAATAAAATTATAATATATCTTGCACTGCCTTAAGAACATATGA-GTAAAAAT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1679237 104 -   2232465 ACCTTTCAGCCCTTGTGACATTCTAATTCAACGACCTTTTG-TCCACTGATCAAGAATGAAATTAACATGTAATCTGGACTGCATCAAGAACATATGA-G-AAAAAT
i otoGar3.GL873742         I 5 C 0
s dasNov3.JH570037           354013 107 -    859332 AGCTTTCAACCCTTGTGACATTCTCAGTTAACTCTCTTTTGTTCCACAAACTAAGAATGGAATTAGCATAAAACCAGGACTGGATCAAAAACATTTAATATGAGAAC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e macNem1.NW_012011356v1    2203821 379 -   2996164 I

a score=22649.000000
s hg38.chr6_GL000254v2_alt   471945 5 +   4827813 ---CTTAA-
s panTro5.chr6             29453013 5 + 175400573 ---CTTAA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29688810 5 + 173848474 ---CTTAA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5479389 5 +   6154872 ---CTTAA-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74384267 5 + 122973662 ---CTTAA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29684415 5 + 172585720 ---CTTAA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29347070 5 - 170955103 ---CTTAA-
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      82404 5 +    766320 ---CTTAA-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28603213 5 -  71996105 ---CTTAA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      51301 5 -    352859 ---CTTAA-
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2210301 5 -   3067355 ---CTTAA-
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037           354120 9 -    859332 TGCCTTCAT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1679341 0 -   2232465 C
e macNem1.NW_012011356v1    2203821 379 -   2996164 I

a score=169131.000000
s hg38.chr6_GL000254v2_alt   471950 31 +   4827813 GATGAGGTAAAAGTGTGTTACAGATAATGTC
s panTro5.chr6             29453018 31 + 175400573 GATGAGGTAAAAGTGTGTTACAGATAATGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29688815 31 + 173848474 GATGAGGTAAAAGTGTGTTACAGATAATGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5479394 31 +   6154872 GATGAGGTAAAAGTGTGTTACAGATAATGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74384272 31 + 122973662 GATGAGGTAAAAGTGTGTTACAGATAATGTC
i nomLeu3.chr1a            C 0 I 123
s rheMac8.chr4             29684420 31 + 172585720 GATGAGGTAAAAGTGTGTTAAAGATAATGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29347075 31 - 170955103 GATGAGGTAAAAGTGTGTTAAAGATAATGTC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      82409 31 +    766320 GATGAGGTAAAAGTGTGTTAAAGATAATGTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28603218 31 -  71996105 GATGAGGTAAAAGTGTGTTAAAGATAATGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      51306 31 -    352859 GATGAGGTAAAAGTGTGTTAAAGATAATGTC
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2210306 31 -   3067355 GATGAGGTAAAAGTGTGTTACAGATAATGTC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1679341 24 -   2232465 AATGAAGGGAAAGTAT-----AGATTATC--
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037           354129 31 -    859332 GTGGAGGTGAAAGTGCTTCCTAGATATTGTC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e macNem1.NW_012011356v1    2203821 379 -   2996164 I

a score=91648.000000
s hg38.chr6_GL000254v2_alt   471981 17 +   4827813 TTCAGTCACCGGGATAT
s panTro5.chr6             29453049 17 + 175400573 TTCAGTCACCGGGATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29688846 17 + 173848474 TTCAGTCACCGGGATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5479425 17 +   6154872 TTCAGTCACCGGGATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29684451 17 + 172585720 TTCAGTCACTGGGATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29347106 17 - 170955103 TTCAGTCACTGGGATAT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      82440 17 +    766320 TTCAGTCACTGGGATAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28603249 17 -  71996105 TTCAGTCACTGGGATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      51337 17 -    352859 TTCAGTCACTGGGATAT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2210337 17 -   3067355 TTCAGTCACTGGGATAT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1679365 17 -   2232465 TTCAGTCACTGGGGCAC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037           354160 17 -    859332 TTCAGTCACAGGCACGT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e macNem1.NW_012011356v1    2203821 379 -   2996164 I
e nomLeu3.chr1a            74384303 123 + 122973662 I

a score=265620.000000
s hg38.chr6_GL000254v2_alt   471998 47 +   4827813 TTTTGACTGACATGGGCTGTCCTTGCCAGGTTCCTAATGGATTTCCA
s panTro5.chr6             29453066 47 + 175400573 TTTTGACTGACATGGGCTGTCCTTGCCAGGTTCCTAATGGATTTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29688863 47 + 173848474 TTTTGACTGACATGGGCTGTCCTTGCCAGGTTCCTAATGGATTTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5479442 47 +   6154872 TTTTGACTGACATGGGCTGTCCTTGCCAGGTTCCTAATGGATTTCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74384426 47 + 122973662 TTTTGACTGACATGGGCTGTCCTTGCCAGGTTCCTAATGGATTTCCA
i nomLeu3.chr1a            I 123 C 0
s rheMac8.chr4             29684468 47 + 172585720 TTTTGACTGACACGGGCTGTCCTCGCTAGATTCCTAATGGATTTCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29347123 47 - 170955103 TTTTGACTGACACGGGCTGTCCTCGCTAGATTCCTAATGGATTTCCA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      82457 46 +    766320 TTTTGA-TGACACGGGCTGTCCTCGCTAGATTCCTAATGGATTTCCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28603266 47 -  71996105 TTTTGACTGACACGGGCTGTCCTCGCTAGATTCCTAATGGATTTCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      51354 47 -    352859 TTTTGAGTGACACGGGCTGTCCTCACTAGATTCCTAATGGATTTCCA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2210354 45 -   3067355 TTTTGACTGACAC-GGCTGTCCTCGCTAGATTCCTAAT-GATTTCCA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1679382 47 -   2232465 TTTTGACTGACATGTGCTCTTCTTACCAGGCTCCTAATTGATTTCTT
i otoGar3.GL873742         C 0 I 71
s dasNov3.JH570037           354177 46 -    859332 -TTTGACAGGTGTGGGCTTTCCTCACTAGTTTCTTCATGGATTTATG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e macNem1.NW_012011356v1    2203821 379 -   2996164 I

a score=385348.000000
s hg38.chr6_GL000254v2_alt   472045 77 +   4827813 CAATGAGAAGCTGATTTTATAGACATTAGTAACATTTGCACTGTCACAGAGAGAAGGTTGTGGCTTTTAATAAAACC
s panTro5.chr6             29453113 77 + 175400573 CAATGAGAAGCTGATTTTATAGACATTAGTAACATTTGCACTGTCACAGAGAGAAGGTTGTGGCTTTTAATAAAACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29688910 77 + 173848474 CAATGAGAAGCTGATTTTATAGACATTAGTAACATTTGCACTGTCACAGAGAGAAGGTTGTGGCTTTTAATAAAACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5479489 77 +   6154872 CAATGAGAAGCTGATTTTATAGACATTAGTAACATTTGCACTGTCACAGAGAGAAGGTTGTGGCTTTTAATAAAACC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74384473 76 + 122973662 CAATGAGAAGCTGATTTTTTAGGCATTAGTAACATTTGCACTGTCACAGAGAGAAGATTGTGAC-TTTAATAAAACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29684515 77 + 172585720 CAATAAGAGGCTGATTTTATAGACATTAGCAACATTTGCACTGTCACAGAGAGAAGGTTGTGACTTTTAATAGagtc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29347170 77 - 170955103 CAGTAAGAGGCTGATTTTATAGACATTAGCAACATTTGCACTGTCACAGAGAGAAGGTTGTGACTTTTAATAGAGTC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      82503 77 +    766320 CAGTAAGAGGCTGATTTTATAGACATTAGCAACATTTGCACTGTCACAGAGAGAAGGTTGTGACTTTTAATAGagtc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28603313 77 -  71996105 CAGTAAGAGGCTGATTTTATAGACATTAGCAACATTTGCACTGTCACAGAGAGAAGGTTGTGACTTTTAATAGAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      51401 77 -    352859 CAGTAAGAGGCTGATTTTATAGACATTAGCAACATTTGCACTGTCACAGAGAGAAGGTTGTGACTTTTAATAGagtc
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2210399 77 -   3067355 CAATAAGAGGCTGATTTTATAAACATTAGCAACATTTGCACTGTCACAGAGAGAAGGTTGTGACTTTTAATAGaatc
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037           354223 72 -    859332 CAAGGAGAAG-TGCTTTTATAAACTCCAGGAAAATG---GTAGTCACAGAGAGAAGGTTGT-ACCTTAAATAAAACC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1679429 71 -   2232465 I
e macNem1.NW_012011356v1    2203821 379 -   2996164 I

a score=371905.000000
s hg38.chr6_GL000254v2_alt   472122 66 +   4827813 AGCCAGTATTTATTAAAGTCCTACTATTCTCACAATGTTGTGTCCTTTATTTTAACCTTAGGGATT
s panTro5.chr6             29453190 66 + 175400573 AGCCAGTATTTATTAAAGTCCTACTATTCTCACAATGTTGTGTCCTTTATTTTCACCTTTGGGATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29688987 66 + 173848474 AGCCAGTATTTATTAAAGTCCTACTATTCTCACAATGTTGTGTCCTTTATTTTCACCTTAGGGATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5479566 66 +   6154872 AGCCAGTATTTATTAAAGTCCTACTATTCTCACAATGTTGTGTCCTTTATTTTAACCTTAGAGATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74384549 66 + 122973662 AGCCAGTATTTATCAAAGTCCTACTATTCTCACAATGTTGTGTCCTTTATTTTAACCTTAGGGATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29684592 66 + 172585720 agccagtatttattaaaggcctactattctcacaattctgtgTCCTTTATTTTAACCTTAGGGATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29347247 66 - 170955103 AGCCAGTATTTATTAAAGGCCTACTATTCTCACAATTCTGTGTCCTTTATTTTAACCTTAGGGATT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      82580 66 +    766320 agccagtatttattaaaggcctactattctcacaattctgtgTCCTTTATTTTAACCTTAGGGATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28603390 66 -  71996105 AGCCAGTATTTATTAAAGGCCTACTATTCTCACAATTCTGTGTCCTTTATTTTAACCTTAGGGATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      51478 66 -    352859 agccagtatttattaaaggcctactattctcacaattctgtgTCCTTTATTTTAACCTTAGGGATT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2210476 66 -   3067355 agccagtatttattaaaggtctactattctcacaatgctgtgTCCTTTATTTTAACCTTAGGGATT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1679500 66 -   2232465 ATACAATATTTATTAGGGGCCTACTATCTGCACAGTTCTGTGTCCTTTATTTTAGCCCTAGAGATT
i otoGar3.GL873742         I 71 I 1
s dasNov3.JH570037           354295 50 -    859332 AACCAGT--------------TGCCATT--CACCAGGCTGTGCATTCTTCTTTAGCCCTGGGGACT
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e macNem1.NW_012011356v1    2203821 379 -   2996164 I

a score=8312.000000
s hg38.chr6_GL000254v2_alt   472188 2 +   4827813 CT
s panTro5.chr6             29453256 2 + 175400573 CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29689053 2 + 173848474 CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5479632 2 +   6154872 CT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74384615 2 + 122973662 CC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29684658 2 + 172585720 CC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29347313 2 - 170955103 CC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      82646 2 +    766320 CC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28603456 2 -  71996105 CC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      51544 2 -    352859 CC
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2210542 2 -   3067355 CT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1679567 2 -   2232465 CA
i otoGar3.GL873742         I 1 C 0
s dasNov3.JH570037           354345 2 -    859332 CC
i dasNov3.JH570037         C 0 I 1
e canFam3.chr35            26138974 64429 +  26524999 I
e macNem1.NW_012011356v1    2203821 379 -   2996164 I

a score=202627.000000
s hg38.chr6_GL000254v2_alt   472190 29 +   4827813 GAGTCCCTCAAGTTTAATTGGTCATTGTG
s panTro5.chr6             29453258 29 + 175400573 GAGTCCCTCAAGTTTAATTGGTCATTGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29689055 29 + 173848474 GAGTCCCTCAAGTTTAATTGGTCATTGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5479634 29 +   6154872 GAGTCCCTCAAGTTTAATTGGTCATTGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74384617 29 + 122973662 GAGTCCCTCAAGTTTAATTGGTCATTGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29684660 29 + 172585720 GAGTCTCTCAAGTTTAATAGGTCATTATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29347315 29 - 170955103 GAGTCTCTCAAGTTTAATTGGTCATTATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2204200 29 -   2996164 GAGTCCCTCAAGTTTAATTGGTCATTAAG
i macNem1.NW_012011356v1   I 379 C 0
s cerAty1.NW_012002711v1      82648 29 +    766320 GAGTCTCTCAAGTTTAGTTGGTCATTATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28603458 29 -  71996105 GAGTCTTTCAAGTTGAATTGGTCATTATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      51546 29 -    352859 GAGTCTCTCAAGTTTAATTGGTCATTATG
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2210544 29 -   3067355 GAATCCCTTAAGTTTAATTGGTCATTGTG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1679569 29 -   2232465 GAATCCCCCAAGTTTAATTGGTCTTTATG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037           354348 29 -    859332 GAGTTCCTCCAGATTAACTGGTGTTTGTG
i dasNov3.JH570037         I 1 I 138
e canFam3.chr35            26138974 64429 +  26524999 I

a score=474883.000000
s hg38.chr6_GL000254v2_alt   472219 75 +   4827813 TCCCCAGAGGCAATAAGTTAACTCTATTCCCAATTGCACTGGTGGCATAATACTGACACATAGGTAGTTCACAAA
s panTro5.chr6             29453287 75 + 175400573 TCCCCAGAGGCAATAAGTTAACTCTATTCCCAATTGCACTGGTGGCATAATACTGACACATAGGTAGTTCACAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29689084 75 + 173848474 TCCCCAGAGGCAATAAGTTAACTCTATTCCCAATTGCACTGGTGGCATAATACTGACACATAGGTAGTTCACAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5479663 75 +   6154872 TCCCCAGAGGCAATAAGTTAACTCTATTCCCAATTGCACTGGTGGCATAATACTGACACATAGGTAGTTCACAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74384646 75 + 122973662 TCCCCAGAGGCAATAAGTGAACTCTATTCCCAATTGCACTGGTGGCATAATACTGACACATAGGTAGTTCACAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29684689 75 + 172585720 TCCCAAGAGGCAATAAGTGAACTCTATTCCCAATTGCACTGGTGGCATGATACTGACACATACGTAGTTCACAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29347344 75 - 170955103 TCCCAAGAGGCAATAAGTGAACTCTATTCCCAATTGCACTGGTGGCATGATACTGACACATACGTAGTTCACAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2204229 75 -   2996164 TCCAGAGAGTCAATAAGTCAACACTATTCCTAACTGGACTGGTTACATAATACTACCACATATGTGGTTCACAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      82677 75 +    766320 TCCCAGGAGGCAATAAGTGAACTCTATTCCCAATTGCACTGGTGGCATGATACTGACACATACGTAGTTCACAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28603487 75 -  71996105 TCCCAAGAGGCAATAAGTGAACTCTATTCCCAATTGCACTGGTGGCATGATACTGACACATACGTAGTTCACAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      51575 75 -    352859 TCCCAGGAGGCAATAAGTGAACTCTATTCCCAATTGCACTGGTGGCATGATACTGACACATACGTAGTTCACAAA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2210573 75 -   3067355 TCCTGAGAGGCAATAAGTGAACTCTATTCCCAATTGCACTGGTGGCATAATACTGACACATAGGTAGTTCACAAA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1679598 75 -   2232465 TCCAGAGAGGCATTAAGTTAACTCTATTCCCAGCTGTATTGGTAGCATAATACTGGCATGTAGGTGGTTCACAAA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037           354377 138 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I

a score=361075.000000
s hg38.chr6_GL000254v2_alt   472294 52 +   4827813 TTCTAAAA-------------CTAGGGTGAAGATTAGAGTTATAAAACATGAACTATGAAAAATA
s panTro5.chr6             29453362 52 + 175400573 TTCTAAAA-------------CTAGGGTGAAGATTAGAGTTATAAAACATGAACTATGAAAAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29689159 52 + 173848474 TTCTAAAA-------------CTAGGGTGAAGATTAGAGTTATAAAACATGAACTATGAAAAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5479738 52 +   6154872 TTCTAAAA-------------CTAGGGTGAAGATTAGAGTTATAAAACATGAACTATGAAAAATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74384721 52 + 122973662 TTCTAAAA-------------CTAGGGTGAAGATTAGAGTTATAAAACATGAACTATGAAAAATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29684764 52 + 172585720 TTCTAAAA-------------CTAGGGTGAAGATTAGAATTATAAAACATGAACTATGAAAAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29347419 52 - 170955103 TTCTAAAA-------------CTAGGGTGAAGATTAGAATTATAAAACATGAACTATGAAAAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2204304 52 -   2996164 TTCTGAAA-------------CCAGGGCGAAGATTAGAGTAATAAAAAATAAACAATGAAAAATA
i macNem1.NW_012011356v1   C 0 N 0
s cerAty1.NW_012002711v1      82752 52 +    766320 TTCTAAAG-------------CTAGGGTGAAGATTAGAATTATAAAACATGAACTATGAAAAATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28603562 52 -  71996105 TTCTAAAA-------------CTAGGGTGAAGATTAGAATTATAAAACATGAACTATGAAAAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      51650 52 -    352859 TTCTAAAA-------------CTAGGGTGAAGATTAGAATTATAAAACATGAACTATGAAAAATA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2210648 52 -   3067355 TTCTAAAA-------------CTAGGGTGAAGATTAGAATTATAAAACGTGAACTATGAAAAATA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1679673 52 -   2232465 TTTTAAAC-------------TTAAGGTGAATATTAGAGCCATAAATCATAAATGGTAAAAGATA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037           354515 65 -    859332 TCCCAAAACACACATGGGTGGCCAGAGTGTAGATTAGAGTCATGAAACCTGAACCATGAAAAGTA
i dasNov3.JH570037         I 138 C 0
e canFam3.chr35            26138974 64429 +  26524999 I

a score=344240.000000
s hg38.chr6_GL000254v2_alt   472346 64 +   4827813 GGTTTGGAATGTATTAATTTGAAGAGCATAA-GGCTAAATAAACATACAGCCACAAATTTCTTTA
s panTro5.chr6             29453414 64 + 175400573 GGTTTGGAATGTATTAATTTGAAGAGCACAA-GGCTAAATAAACATACAGCCGCAAATTTCTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29689211 64 + 173848474 GGTTTGGAATGTATTAATTTGAAGAGCACAA-GGCTAAATAAACATACAGCCGCAAATTTCTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5479790 60 +   6154872 GGTTTGGAATGTATTAATTTGAAGAGCACAA-GGCTAAATAAACATACAGCCGCAAATTTC----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74384773 64 + 122973662 GGTTTGGAATGTATTAATTTGAAGAGCACGA-GGCTAAATAAACATACAGCCATGAatttcttta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29684816 64 + 172585720 GGTTTGGAATGTATTAATTTGAAGAGCGCAA-GGCTAAATAAACATATAGCCACAAATTTCTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29347471 64 - 170955103 GGTTTGGAATGTATTAATTTGAAGAGCACAA-GGCTAAATAAACATATAGCCGCAAATTTCTTTA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      82804 64 +    766320 GGTTTGGAGTGTATTAATTTGAAGAGCGCAA-GGCTAAATAAACATATAGCCACAAATTTCTTTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28603614 64 -  71996105 GGTTTGGAATGTATTAATTTGAAGAGCGCAA-GGCTAAAAAAACATACAGCCGCAAATTTCTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      51702 64 -    352859 GGTTTGGAATGTATTAATTTGAAGAGCGCAA-GGCTAAATAAACATATAGCCGCAAATTTCTTTA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2210700 64 -   3067355 GGTTTGGAATGTATTAATTTGAAGAGCGCAA-GGCTAAATAAACATACAGCCGCAAATTTCTTTA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1679725 64 -   2232465 AGTTCAAAGT-TGCTAATTAGGAGAACACAATGGCTTAATGAACTTATAGCTTCAAATTCCTTCA
i otoGar3.GL873742         C 0 I 4
s dasNov3.JH570037           354580 61 -    859332 -ATTGGGAATTATTTAAACTGGAGCGCATAG-GG-TAAACAACCTTATTGTCCCAAATTCCttt-
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I

a score=1080165.000000
s hg38.chr6_GL000254v2_alt   472410 232 +   4827813 TTTTTCATTTTTAAAttttatagctgtattgagatataatttatttacaatacagttcacccatttaaagtgtacaagtcaatgatttttggtatattTCATTACTAATTTATAACattgtggtaatatataacataaaatttgccattttaactatttttaagtgtacaatttaatggtgttaattatattcatactattgtgtaaatcttgccactattttctaaacttt
s panTro5.chr6             29453478 229 + 175400573 TTTTTCATTTTTAAAttttatagctgtattgagatataatttatttacaatacagttcacccatttaaagtgtacaagtcaatgatttttggtatattTCATTACTAATTTATAACattgtggtaatatataac--aaaatctgccattttaacta-ttttaagtgtacaatttaatggtgttaattatattcatactattgtgtaaatcttgccactattttctaaacttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29689275 229 + 173848474 TTTTTCATTTTTAAAttttatagctgtattgagatataatttatttacaatacagttcacccatttaaagtgtacaagtcaatgatttttggtatattTCATTACTAATTTATAACattgtggtaatatataac--aaaatctgccattttaacta-ttttaagtgtacaatttaatggtgttaattatattcatactattgtgtaaatcttgccactattttctaaacttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5479850 232 +   6154872 TTTTTCATTTTTAAAttttatagctgtattgagatataatttatttacaatacagttcacccatttaaagtgtacaagtcaatgatttttggtatattTCATTACTAATTTATAACattgtggtaatatataacataaaatttgccattttaactatttttaagtgtacaatttaatggtgttaattatattcatagtattgtgtaaatcttgccactattttctaaacttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74384837 232 + 122973662 tttttcatttttaaattttatagctgtattgagatataatttatttacaatacagttcacccatttaaagtgtacaagtcaatgatttttggtatatttcattactactttatAACACtgtggtaatatataacataaaatttgccattttaactatttttaagtgtacaatttaatggtgttaattatattcatacgattgtgtaaatcttgccactattttttaaacttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29684880 232 + 172585720 TTTTTCATTTTTAAAttttatagctgtattgagatataatttatttacaatacagttcaaacatttaaagtatacaagtcaatgatttttggtatattTCATTACTAATTTATAACattgtagtaatatataacataaaatttgccactttaactatttttaactgtacaatttaatggtgttaattatattcatactattgtgtaaatcttgccactattttctaaacttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29347535 232 - 170955103 TTTTTCATTTTTAAAttttatagctgtattgagatataatttatttacaatacagttcaaacatttaaagtatacaagtcaatgatttttggtatattTCATTACTAATTTATAACattgtagtaatatataacataaaatttgccactttaactatttttaactgtacaatttaatggtgttaattatattcatactattgtgtaaatcttgccactattttctaaacttt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      82868 232 +    766320 TTTTTCATTTTTAAAttttatagctgtattgagatataatttatttacaatacagttcaaacatttaaagtatacaagtcaatgatttttggtatattTCATTACTAATTTATAACattgtagtaatatataacataaaatttgccacttcaactatttttaactgtacaatttaatggtgttaattatattcatactattgtgtaaatcttgccactattttctaaacttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28603678 232 -  71996105 TTTTTCATTTTTAAAttttatagctgtattgagatataatttatttacagtacagttcaaacatttaaagtgtataagtcaatgatttttggtatattTCATTACTAATTTATAACattgtagtaatatgtaacataaaatttgccactttaactatttttaactgtacaatttaatggtgttaattatattcatactattgtgtaaatcttgccactattttctaaacttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      51766 232 -    352859 TTTTTCATTTTTAAAttttatagctgtattgagatataatttatttacaatacagttcaaacatttaaagtatacaagtcaatgatttttggtatattTCATTACTAATTTATAACattgtagtaatatataacataaaatttgccactttaactatttttaactgtacaatttaatggtgttaattatattcatactattgtgtaaatcttgccactattttctaaacttt
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2210764 232 -   3067355 TTTTTCATTTTTAAAttttatagctgtattgagatataatttatttacaatacagttcaaccatttaaagtgtacaagtcaatgatttttggtatattTCATTACTAATTTATAACattgtagtaatatataacataaaatttgccattttaactacttttaagtgtacaatttaatggtattaattatattcatactattatgtaaatcttgccactattttcttaacttt
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037           354641  79 -    859332 ------------------------------------tattttatt----------------------------------------------atatatttttttataaacttatact------ttaataaaGGACATAGA-----------------------------------------------------------------TAAAGCTGGCGAGCATTTGCCAACATTT
i dasNov3.JH570037         C 0 I 127
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1679789   4 -   2232465 I

a score=1490027.000000
s hg38.chr6_GL000254v2_alt   472642 311 +   4827813 ttcgtcatcccaaacag-aaa--ctctaacccttagtgataactctccattcccctcccccatcccctagtaactttcaacctaccttatgtctgtatgaatttgcatgttccagatatttcatattattggaaacatacaatttttgcccttttaggtctggcttattcatttagcataaGATGTACATATTGCTTTATAGCCTGCTTTTTCACTTAGCAGCATATTGTGAGAATGTTCATGGTTAGGCAGGGACTAGGCAGTGGAGTTGGGTGGAATTTTGCAAACCATACTTAGGAGTTTGGATTCTGTTT
s panTro5.chr6             29453707 312 + 175400573 ttcgtcatcccaaacagaaaa--ctctaacccttagtgataactctccattcccctcccccatcccctagtaactttcaacctaccttatgtctgtatgaatttgcatgttccagatatttcatattattggaaacatacaatttttgcccttttaggtctggcttattcatttagcataagatgtacatattgctttatagcctgctttttcacttagcagcatattgtgagaatgttcATGGTTAGGCAGGGACTAGGCAGTGGAGTTGGGTGGAATTTTGCAAACCACACTTAGGAGTTTGGATTCTGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29689504 311 + 173848474 ttcgtcatcccaaacag-aaa--ctctaacccttagtgataactctccattcccctcccccatcccctagtaactttcaacctaccttatgtctgtatgaatttgcatgttccagatatttcatattattggaaacatacaatttttgcccttttaggtctggcttattcatttagcataaGAtgtacatattgctttataacctgctttttcacttagcagcatattgtgagaatgttcATGGTTAGGCAGGGACTAGGCAGTGGAGTTGGGTGGAATTTTGCAAACCACACTTAGGAGTTTGGATTCTGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5480082 311 +   6154872 ttcgtcatcccaaacag-aaa--ctctaacccatagtgataactctccattcccctcccccatcccatagtaactttcaacctaccttatgtctgtatgaatttgcatgttccagatatttcatattattggaaacatacaatttttgcccttttaggtctggcttattcatttagcataaGAtgtacatattgctttatagcctgctttttcacttagcagcatattgtgagaatgttcATGGTTAGGCAGGGACTAGGCAGTGGAGTTGGGTGGAATTTTGCAAACCATACTTAGGAGTTTGGATTTTGTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74385069 311 + 122973662 ttcgtcatcccaaacag-aaa--ctctaacccttagtgataactctccattcccctcccccattccctagtaactttcaacctactttatgtctgtatgaatttgcatgttccagatatttcatattattggaaacatacaatttttgcccttttaggtctggcttattcatttagcataaGATGTACATATTACTTTATAGTCTGCTTTTTCACTTGGCAGCGTATCGTGAGAATGTTCATGGTTAGGCAGGGACTAGGCAGTGGAGTTGGGTGGAATTTTGTAAACCATGCTTAGGAGTTTGGATTTTATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29685112 313 + 172585720 ttcatcatcccaaacag-aaacgctgtaacccttagtgataactctccattcccctcccccataccctagtaactatcaacctaccttatgtctccatgaatttgcatgttccagatatttcatattattggaaacatacaatttttacccttttagttctggcttattcatttagcataaGATGTACATATTGCTTTATAGCCTGCTTTTTCATTTAGCAGCATATTGTGAGAATGTTTATGGTTAGGCAGGGACTAGGCAGTGCAGTTGGGCAGAATTTTGTAAATCATGCTTAGGAGTTTGGATTTTGTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29347767 313 - 170955103 ttcatcatcccaaacag-aaacgctgtaacccttagtgataactctccattcccctcccccataccctagtaactatcaacctaccttatgtctccatgaatttgcatgttccagatatttcatattattggaaacatacaatttttacccttttagttctggcttattcatttagcataaGATGTACATATTGCTTTATAGCCTGCTTTTTCATTTAGCAGCATATTGTGAGAATGTTTATGGTTAGGCAGGGACTAGGCAGTGCAGTTGGGCAGAATTTTGTAAATCATGCTTAGGAGTTTGGATTTTGTTT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      83100 313 +    766320 ttcatcatcccaaacag-aaacgctgtaacccttagtgataactctccattcccctcccccataccctagtaactttcaacctaccttatgtctccatgaatttgcatgttccagatatttcatattattggaaacatacaatttttacccttttagttctggcttattcatttagcataaGATGTACATATTGCTTTATAGCCTGCTTTTTCATTTAGCAGCATATTGTGAGAATGTTCATGGTTAGGCAGGGACTAGGCAGTGCAGTTGGGCAGAATTTTGTAAATTATGCTTAGGAGTTTGGATTTTGTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28603910 313 -  71996105 ttcatcatcccaaacag-aaacgctgtaacccttagtgataactctccattcccctcccccataccctagtaaccttcaacctaccttatgtctccatgaatttgcatgttccagatatttcatattattggaaacatacaatttttacccttttagttctggcttattcatttagcataaGATGTACCTATTGCTTTATAGCCTGCTTTTTCATTTAGCAGCATGTTGTGAGAACGTTCATGGTTAGGCAGGGACTAGGCAGTGCAGTTGGGCAGAATTTTGTAAATCATGCTTAGGAGTTTGGATTTTGTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      51998 313 -    352859 ttcatcatcccaaacag-aaacgctgtaacccttagtgataactctccattcccctcccccataccctagtaactttcaacctaccttatgtctccatgaatttgcatgttccagatatttcatattattggaaacatacaatttttacccttttagttctggcttattcatttagcataaGATGTACATATTGCTTTATAGCCTGCTTTTTCATTTAGCAGCATATTGTGAGAATGTTCATGGTTAGGCAGGGACTAGGCAGTGCAGTTGGGCAGAATTTTGTAAATTATGCTTAGGAGTTTGGATTTTGTTT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2210996 313 -   3067355 ttcatcatcccaaacag-aaacgctctaacccttagtgataactctccattcccctcctctataccctagtaaccttcaacctaccttatatctccatgaatttgcgtgttccagatatttcatgttattggaaacatacaatttttacccttttagttctggcttattcatttagcataaGATGTACATATTGCTCTATAGCCTGCTTTTTCATTTAGCAGCATATTGTGAGAATGTTCATGGTTAGGCAGGGACTAGGCAGTGCAGTTGGGCAGAATTTTGTAAATCATGCTTAGGAGTTTGGATTTTGTTT
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037           354720 127 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1679789   4 -   2232465 I

a score=43393.000000
s hg38.chr6_GL000254v2_alt   472953 11 +   4827813 TGTAGGAC----------TTG
s panTro5.chr6             29454019 11 + 175400573 TGTAGGAC----------TTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29689815 11 + 173848474 TGTAGGAC----------TTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5480393 11 +   6154872 TGTAGGAC----------TTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74385380 11 + 122973662 TGTAGGAC----------TTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29685425 21 + 172585720 TGTAGGATTTAACGTAAATTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29348080 21 - 170955103 TGTAGGATTTAACGTAAATTG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      83413 21 +    766320 TGTAGGATTTAACGTAAATTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28604223 21 -  71996105 TGTAGGATTTAACGTAAATTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      52311 21 -    352859 TGTAGGATTTAACGTAAATTG
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2211309 21 -   3067355 TGTAGGATTTAACGTAAATTG
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037           354847 11 -    859332 ----------CACATAAAATG
i dasNov3.JH570037         I 127 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1679789  4 -   2232465 I

a score=353137.000000
s hg38.chr6_GL000254v2_alt   472964 57 +   4827813 GTCTCAGGGTCAAATAGGGAGTCTTTTGATGGTGTATATAGGAAAATGGTATTTCTA
s panTro5.chr6             29454030 57 + 175400573 GTCTCAGGGTCAAATAGGGAGTCTTTTGATGGTGTATATAGGAAAATGGTATTTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29689826 57 + 173848474 GTCTCAGGGTCAAATAGGGAGTCTTTTGATGGTGTATATAGGAAAATGGTATTTCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5480404 57 +   6154872 GTCTCAGGGTCAAATAGGGAGTCTTTTGATGGTGTATACAGGAAAATTGTATTTCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74385391 57 + 122973662 GTCTTAGGGTCAAATAGGGAGTCCTTTGATGGTGTATATAGGGAAATGGTATTTCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29685446 57 + 172585720 GTCTCAGGGTCAAATAGGGAGTGCTTTGAGGGCGTATATAGGAAAATGGTATTTCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29348101 57 - 170955103 GTCTCAGGGTCAAATAGGGAGTGCTTTGAGGGCGTATATAGGAAAATGGTATTTCTA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      83434 57 +    766320 GTCTCAGGGTCAAATAGGGAGTGCTTTGATGGCGTATATAGGAAAATGGTATTTCTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28604244 57 -  71996105 GTCTCAGGGTCAAATAGGGAGTGCTTTGATGGCGTATATAGGAAAATGGTATTTCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      52332 57 -    352859 GTCTCAGGGTCAAATAGGGAGTGCTTTGATGGCGTATATAGGAAAATGGTATTTCTA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2211330 57 -   3067355 GTCTCAGGGTCAAATAGGGAGTGCTTTGATGGCGTATATAGGAAAATGGTATTTCTA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1679793 57 -   2232465 GTCTCAGGGTCAAATAGTGAGACCTCTGATGGTATATATGGAAAAACAATATTTCTA
i otoGar3.GL873742         I 4 I 50
s dasNov3.JH570037           354858 56 -    859332 GTCTTGGGG-CAAATAGTGAGCCCTTTGATGGTGCATATATGAAAATAGTATTTCTG
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I

a score=70988.000000
s hg38.chr6_GL000254v2_alt   473021 18 +   4827813 TTGTTTACTGATTTTTTT
s panTro5.chr6             29454087 18 + 175400573 TTGTTTACTGATTTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29689883 18 + 173848474 TTGTTTACTGATTTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5480461 18 +   6154872 TTGTTTACTGATTTTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74385448 18 + 122973662 TTGTTTACTGATTTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29685503 18 + 172585720 TTGTTGATTGATTTTTTT
i rheMac8.chr4             C 0 I 3
s macFas5.chr4             29348158 18 - 170955103 TTGTTGATTGATTTTTTT
i macFas5.chr4             C 0 I 3
s cerAty1.NW_012002711v1      83491 18 +    766320 TTGTTGATTGGTTTTTTT
i cerAty1.NW_012002711v1   C 0 I 3
s chlSab2.chr17            28604301 17 -  71996105 TTGTTGATTGAT-ATTTT
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012099655v1      52389 16 -    352859 TTGTTGATTGAT--TTTT
i manLeu1.NW_012099655v1   C 0 I 3
s colAng1.NW_012115566v1    2211387 18 -   3067355 TTGTTGATTGATTTTTTT
i colAng1.NW_012115566v1   C 0 M 875
s dasNov3.JH570037           354914 16 -    859332 TTGTTCACTGGTTTGT--
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1679850 50 -   2232465 I

a score=169206.000000
s hg38.chr6_GL000254v2_alt   473039 39 +   4827813 GTGATG----AATATGCTTGGACTAAATCTCCCAAAGATCTGT
s panTro5.chr6             29454105 39 + 175400573 GTGATG----AATATGCTTGGACTAAATCTCCCAAAGATCTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29689901 39 + 173848474 GTGATG----AATATGCTTGGACTAAATCTCCCAAAGATCTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5480479 39 +   6154872 GTGACG----AATATGCTTGGACTAAATCTCCCAAAGATCTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74385466 43 + 122973662 GTGATGAATAAATATGCTTGGACTAAATCTCCCAGAGATCTGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29685524 39 + 172585720 GTGATG----AATATGCTTGGACTAAATCTCCCAGAGATCTGC
i rheMac8.chr4             I 3 C 0
s macFas5.chr4             29348179 39 - 170955103 GTGATG----AATATGCTTGGACTAAATCTCCCAGAGATCTGC
i macFas5.chr4             I 3 C 0
s cerAty1.NW_012002711v1      83512 39 +    766320 GTGATG----AATATGCTTGGACTAAATCTCCCAGAGATCTGC
i cerAty1.NW_012002711v1   I 3 C 0
s chlSab2.chr17            28604321 39 -  71996105 GTGATG----CATATGCTTGGACTAAATCTCCCAGAGATCTGC
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012099655v1      52408 39 -    352859 GTGATG----AATATGCTTGGACTAAATCTCCCAGAGATCTGC
i manLeu1.NW_012099655v1   I 3 C 0
s dasNov3.JH570037           354930 37 -    859332 -GAATG----AATGTACTTGAACTAAA-CTGCCAGAAACCTGC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1679850 50 -   2232465 I
e colAng1.NW_012115566v1    2211405 875 -   3067355 M

a score=499725.000000
s hg38.chr6_GL000254v2_alt   473078 102 +   4827813 GGTTAAAATATTATTTATATCATATGATGTCATTTAACATA--AATTAACACACTGAAGTTTAAGGTTAGCATTAATTCACTGGAGCAGAACAAGTAGAAATAA
s panTro5.chr6             29454144 102 + 175400573 GGCTAAAATATTATTTATATCATATGATGTCATTTAACATA--AATTAACACACTGAAGTTTAAGGTTAGCATTAATTCACTGGAGCAGAACAAGTAGAAATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29689940 102 + 173848474 GGCTAAAATATTATTTATATCATATGATGTCATTTAACATA--AATTAACACACTGAAGTTTAAGGTTAGCATTAATTCACTGGAGCAGAACAAGTAGAAATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5480518 102 +   6154872 GGTTAAAATATTATTTATATCATATGATGTCATTTAACATA--AATTAACACACTGAAGTTTAAGGTTAGCATTAATTCACTGGAGCAGAACAAGTAGAAATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74385509 102 + 122973662 GGTTAAAATATTATTTCTATCATATCATGTCATTTAACATA--AATTAACACACTGAAGTTTAAGGTTAGCAGTAATTCACTGGAGCAGAACAAGTAGAAATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29685563 102 + 172585720 GGTTAAAATATTATTTACATCATATGATGTCATTTAACATA--AATTAACATACTGAAGTTTAAGGTTAGCATTAATTCACTGGAGCAGAACAAGTAGAAATAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29348218 102 - 170955103 GGTTAAAATATTATTTACATCATATGATGTCATTTAACATA--AATTAACATACTGAAGTTTAAGGTTAGCATTAATTCACTGGAGCAGAACAAGTAGAAATAA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      83551 102 +    766320 GGTTAAAATATTATTTACATCATATGATGTCATTTAACATA--AATTAACATACTGAAGTTTAAGGTTAGCATTAATTCACTGGAGCAGAACAAGTAGAAATAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28604360 102 -  71996105 GGTTAAAATATTATTTACATCATATGATGTCATTTAACATA--AATTAACATACTGAAGTTTAAGGTTAGCATTAATTCACTGGAGCAGAACAAGTAGAAATAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      52447 101 -    352859 AGTTAAAATATTATTTACATCATATGATGTCATTTAACAT---AATTAACATACTGAAGTTTAAGGTTAGCATTAATTCACTGGAGCAAAACAAGTAGAAATAA
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          1679900 100 -   2232465 GGTTAAAATATTGTGCA----ATACAAAGTCACTTAACATATGAAAATACACACTGAAATTTAAGGTTAGCCTAAATCCACTCGGGTAGAATAAGTGGAAATGA
i otoGar3.GL873742         I 50 I 2
s dasNov3.JH570037           354967 100 -    859332 AGTTTGAAAATTA----CATCACGCAAAGTCAGTTGATGTATGAATGAACACACTGAGGTTTCAAGTTAGTAGTAATTCACTGGGGCAGAACTAGAAGAATTGA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e colAng1.NW_012115566v1    2211405 875 -   3067355 M

a score=503698.000000
s hg38.chr6_GL000254v2_alt   473180 107 +   4827813 T--GAGATTGCAACTGGAATAGTTTTTGAAAATAAGAAGATTTATGCAATGTATAACTTAATAAGTGCTCACCAAAGATTTTCAGTGaaataaagaaaattataattaa
s panTro5.chr6             29454246 107 + 175400573 T--GAGATTGCAACTGGAATAGTTTTTGAAAATAAGAAGATTTATGCAATGTATAACTTAATAAGTGCTCACCAAAGATTTTCAGTGaaataaagaaaattataattaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29690042 107 + 173848474 T--GAGATTGCAACTGGAATCGTTTTTGAAAATAAGAAGATTTATGCAATGTATAACTTAATAAGTGCTCACCAAAGATTTTCAGTGaaataaagaaaattataattaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5480620 107 +   6154872 T--GAGATTGCAACTGGAATAGTTTTTGAAAATAAGGAGAGGTATGCAATGTATAACTTAATAAGTGCTCACCAAAGATTTTCAGTGaaataaagaaaattataattaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74385611 106 + 122973662 TACGAGATTGCAACTGGAATAGTTTTTGAA---AAGAAGATTTATGCAATTTATAACTTAATAAGTACTCACCAAAGATTTTCAGTGaaataaagaaaattataattaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29685665 109 + 172585720 TATGAGATTGCAACTGGAATAGTCTTTGAAAATAAGAAGATGTATGCAATTTATAGCTTAATAAGTGCTCGCCAAATATTTTCAGTGaaataaagaaaattataattaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29348320 109 - 170955103 TATGAGATTGCAACTGGAATAGTCTTTGAAAATAAGAAGATTTATGCAATTTATAGCTTAATAAGTGCTCGCCAAATATTTTCAGTGaaataaagaaaattataattaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      83653 109 +    766320 TATGAGATTGCAACTGGAATAGTCTTTGAAAATAAGAAGATTTATGCAATTTATAGCTTAATAAGTGCTCGCCAAGTATTTTCAGTGaaataaagaaaattataattaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28604462 109 -  71996105 TATGAGATTGCAACTGGAATAGTCTTTGAAAATAAGAAGATTTATGCAATTTATAGCTTAATAAGTGCTCGCCAAATATTTTCAGTGaaataaagaaaattataattaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      52548 109 -    352859 TATGAGATTGCAACCGGAATAGTCTTTGAAAATAAGAAGATTTATGCAATTTATAGCTTAATAAGTGCTCGCCAAATATTTTCAGTGaaataaagaaaattataattaa
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          1680002 105 -   2232465 --TGAGATCACAACAGGAATAGTTTTTGAAAATAAATTGACTTGTGCAATTTATAACTTAATTTGTGCTCACCTAAAATTCT-AGTAAAATAAAT-AAATTGTAATTGA
i otoGar3.GL873742         I 2 I 291
s dasNov3.JH570037           355067 104 -    859332 TGAGGAAATCAAACAGGAATGGTTTTTGAA---AAGTAGATTTTTGCAATTTATAACTTAATATGTGATCACCTAAGATTTTTAATGAAGTAAAGAACATGGAAATT--
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e colAng1.NW_012115566v1    2211405 875 -   3067355 M

a score=127006.000000
s hg38.chr6_GL000254v2_alt   473287 30 +   4827813 attaaatATCTAGTATCAGCCTGGATATAG
s panTro5.chr6             29454353 30 + 175400573 attaaatATCTAGTATCAGCCTGGATATAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29690149 30 + 173848474 attaaatATCTAGTATCAGCCTGGATATAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5480727 30 +   6154872 attaaatATCTAGTATCAGCCTGGATATAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74385717 28 + 122973662 attaaatATCTAGTATCAGCCTGGATAT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29685774 30 + 172585720 attaaatATCTAGTATCAACCTGGATATAG
i rheMac8.chr4             C 0 I 38
s macFas5.chr4             29348429 30 - 170955103 attaaatATCTAGTATCAACCTGGATATAG
i macFas5.chr4             C 0 I 38
s cerAty1.NW_012002711v1      83762 30 +    766320 attaaatATCTAGTATCAACCTGGATATAG
i cerAty1.NW_012002711v1   C 0 I 63
s chlSab2.chr17            28604571 30 -  71996105 attaaatATCTAGTATCAACCTGGATATAG
i chlSab2.chr17            C 0 I 28
s manLeu1.NW_012099655v1      52657 30 -    352859 attaaatATCTAGTATCAACCTGGATATAG
i manLeu1.NW_012099655v1   C 0 I 26
s dasNov3.JH570037           355171 25 -    859332 -----GTGTTTACCATCAGTCTAGATATAA
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1680107 291 -   2232465 I
e colAng1.NW_012115566v1    2211405 875 -   3067355 M

a score=-724.000000
s hg38.chr6_GL000254v2_alt   473317 3 +   4827813 -CCT
s panTro5.chr6             29454383 3 + 175400573 -CCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29690179 3 + 173848474 -CCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5480757 3 +   6154872 -CCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29685842 3 + 172585720 -cac
i rheMac8.chr4             I 38 C 0
s macFas5.chr4             29348497 3 - 170955103 -cac
i macFas5.chr4             I 38 C 0
s chlSab2.chr17            28604629 3 -  71996105 -CAC
i chlSab2.chr17            I 28 C 0
s manLeu1.NW_012099655v1      52713 3 -    352859 -cac
i manLeu1.NW_012099655v1   I 26 C 0
s dasNov3.JH570037           355196 3 -    859332 ACT-
i dasNov3.JH570037         C 0 I 55
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1680107 291 -   2232465 I
e colAng1.NW_012115566v1    2211405 875 -   3067355 M
e cerAty1.NW_012002711v1      83792 63 +    766320 I
e nomLeu3.chr1a            74385745 0 + 122973662 C

a score=73621.000000
s hg38.chr6_GL000254v2_alt   473320 41 +   4827813 GGATATA-TATTGtttg-tttgttttgttttgttttgttttgt
s panTro5.chr6             29454386 35 + 175400573 GGATATA-TATTGtttg-tttgttttgttttgttttg------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29690182 35 + 173848474 GGATATA-TATTGtttg-tttgttttgttttgttttg------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5480760 42 +   6154872 GGATATA-TATTGtttgttttgttttgttttgttttgttttgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74385745 33 + 122973662 --ATATT-GTTTGtttg-tttgttttgttttgttttg------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29685845 36 + 172585720 acacaTGCTAttttttg-tttgttttcttttgttttg------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29348500 36 - 170955103 acacaTGCTAttttttg-tttgttttcttttgttttg------
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            28604632 36 -  71996105 ACACATGCTAttttttg-tttgttttgttttgttttg------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      52716 36 -    352859 acacaTGCTAttttttg-tttgttttgttttgttttg------
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570037           355199 55 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1680107 291 -   2232465 I
e colAng1.NW_012115566v1    2211405 875 -   3067355 M
e cerAty1.NW_012002711v1      83792 63 +    766320 I

a score=828964.000000
s hg38.chr6_GL000254v2_alt   473361 235 +   4827813 tttta-agacaggat-ctcactcccatggcccaggctggagtgcagtggtgcgatcacaggtcactgcagcctcgacttcccaggctgaggtcatcctcccgcctcagctgcctgagtag-ctggtaccacaggtgca--cgccaccaagcccagctaa-tttttgtatcttttgtagagat-ggtgttttaatacattgcccaggctggtctccaactcctgggttcaggccatccacctg
s panTro5.chr6             29454421 234 + 175400573 -ttta-agacaggat-ctcactcccatggcccaggctggagtgcagtgttgcgatcacaggtcactgcagcctcgacttcccaggctgaggtcatcctcccgcctcagctgcctgagtag-ctggtaccacaggtgca--cgccaccaagcccagctaa-tttttgtatcttttgtagagat-ggggttttaatacattgcccaggctggtctccaactcctgggttcaggccatccacctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29690217 235 + 173848474 -ttta-agacaggat-ctcactcccatggcccaggctggagtgcagtattgcgatcacaggtcactgcagcctcgacttcccaggctgaggtcatcctcccgcctcagctgcctgagtag-ctggtaccacaggtgca--cgccaccaagcccagctaa-tttttgtatcttttgtagagatgggggttttaatacattgcccaggctggtctccaactcctgggttcaggccatccacctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5480802 235 +   6154872 tttta-agacaggat-ctcactcccatggcccaggctggagtgcagtggtgtgatcacaggtcactgcggcctcgacttcccaggctgaggtcatcctcccgcctcagctgcctgagtag-ctggtaccacaggtgca--cgccaccaagcccagctaa-tttttgtatcttttgtagagat-ggggttttaccacattgcccaggctggtctccaactcgtgggttcaggccatccacctg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74385778 233 + 122973662 tttta-cgacaggat-ctcactcccatgggccaggctggagtgcagtggtgcgatcacaggtcactgaagccttcacttcccaggctgaggtgatcctcctgcctcagctgcctgagtag-ctggtaccacaggtgca--catcaccaagcccagctaa-tttttgaatcttttgtagagat-ggggttttaccacattgcccaggctggtctccaactcct-ggTTCA-GCCATCCACCTG
i nomLeu3.chr1a            C 0 I 1771
s rheMac8.chr4             29685881 222 + 172585720 ------agacaggat-ctcactcccatggcccaggttggagtgcagtggtgtgatcacaggtcactgcagactcgacttcctgggctgaggtgatcctcccgcctcagctgcctgagtag-ctgggaccacagctgca--cgccaccacacccagctaa-tttttgaatcttttgtggagac-gagattttaccacattgcccaggctggtctccaactcttgggttcgggcca--------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29348536 230 - 170955103 ------agacaggat-ctcactcccatggcccaggttggagtgcagtggtgtgatcacaggtcactgcagactcgacttcctgggctgaggtgatcctcctgcctcagctgcctgagtag-ctgggaccacagctgca--cgccaccacacccagctaa-ttttttaatcttttgtggagac-gagattttaccacattgcccaggctggtctccaactcttgggttcaggccatccacctg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      83855 237 +    766320 -ttttgagacaggatcctcactcccatggcccaggtcggagtgcagtggtgtgatcaca-gtcactgcagactcgacttcctgggctgaggtgatcctcccgcctcagctgcctgagtagtctgggaccacagctgcatgcgccaccacacccagctaattttttgaattttttgtgga-ac-gagattttaccacattgcccaggctggtctcc-actcttgggttcaggccatccacctg
i cerAty1.NW_012002711v1   I 63 C 0
s chlSab2.chr17            28604668 230 -  71996105 ------agacaggat-ctcactcccatggcccaggtcggagtgcagtggtgtgatcacaggtcactgcagactcgacttcctgggctgaggtgatactcccgcctcagctgcctgagtag-ctgggaccacagctgca--cgccaccacacccagctaa-tttttgaatcttttgtggagac-gagattttaccacattgcccaggctggtcaccaactcttgggttcaggccatccacctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      52752 230 -    352859 ------agacaggat-ctcactcccatggcccaggtcggagtgcagtggtgtgatcacaggtcactgcagactcgacttcctgggctgaggtgatcctcccgcctcagctgcctgagtag-ctgggaccacagctgca--cgccaccacacccagctaa-tttttgaatcttttgtggagac-gagattttaccacattgcccaggctggtctccaactcttgggttcaggccatccacctg
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570037           355199  55 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1680107 291 -   2232465 I
e colAng1.NW_012115566v1    2211405 875 -   3067355 M

a score=168052.000000
s hg38.chr6_GL000254v2_alt   473596 53 +   4827813 ccttggcctctcaaagtgctgggattacaggtgtgagccatggcacctggccA
s panTro5.chr6             29454655 53 + 175400573 ccttggcctctcaaagtgctgggattacaggtgtgagccatggcacctggccA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29690452 53 + 173848474 ccttggcctctcaaagtgctgggattacaggtgtgagccatggcacctggccA
i panPan2.chr6             C 0 M 250
s gorGor5.CYUI01015250v1    5481037 53 +   6154872 ccttggcctctcaaagtgctgggattacaggtgtgagccatggcacctggccA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29686103 45 + 172585720 --------tctcaaagtgctgggattacaggtatgagccatggtacctggccA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29348766 53 - 170955103 ccttggcctctcaaagtgctgggattacaggtatgagccatggtacctggccA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      84092 53 +    766320 ccttggcctctcaaagtgctgggattacaggtatgagccatggtacctggccA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28604898 53 -  71996105 ccttggcctctcaaagtgctgggattacaggtatgagccgtggtacctggccA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      52982 53 -    352859 ccttggcctctcaaagtgctgggattataggtatgagccatggtacctggccA
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570037           355199 55 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1680107 291 -   2232465 I
e colAng1.NW_012115566v1    2211405 875 -   3067355 M
e nomLeu3.chr1a            74386011 1771 + 122973662 I

a score=139277.000000
s hg38.chr6_GL000254v2_alt   473649  78 +   4827813 CATGCTCGTATTTTAATGTATTTGTTTCCTCTTAC----------------------------ttttcttttgtgtatcatttttttgttttgagatggagtcttg
s panTro5.chr6             29454708  78 + 175400573 CATGCTCGTATTTTAATGTATTTGTTTCCCCTTAC----------------------------TTTTCTTTTGTGTATCAtttttttgttttgagatggagtcttg
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5481090  77 +   6154872 CATGCTCGTA-TTTAATGTATTTGTTTCCCCTTAC----------------------------TTTTCTTTTGTGTATCAtttttttgttttgagatggagtcttg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29686148  76 + 172585720 CATGCTCATATTTTAATGTATTTGTTTTCCCTTAG----------------------------ttttcttttgtgtat--ttttttttttttgaggcagagtcttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29348819  76 - 170955103 CATGCTCGTATTTTAATGTATTTGTTTTCCCTTAG----------------------------ttttcttttgtgtat--ttttttttttttgaggcggagtcttg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      84145  71 +    766320 CATGCTCGTA-TTTAATGTATTGCTTT--CCTTAG----------------------------ttttcttttgt-ta---ttttttttttttgaggcggagtcttg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28604951 102 -  71996105 CATGCttgtattttaatgtatttgttttcccttagttttttttttttttttttttttttttttttttttttttttt----ttttttttttttgaggcggagtcttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      53035  74 -    352859 CATGCTCGTATTTTAATGTATTTGTTTTCCCTTAG----------------------------ttttcttttgtgt----atttttttttttgaggcggagtcttg
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570037           355199  55 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1680107 291 -   2232465 I
e colAng1.NW_012115566v1    2211405 875 -   3067355 M
e nomLeu3.chr1a            74386011 1771 + 122973662 I
e panPan2.chr6             29690505 250 + 173848474 M

a score=93382.000000
s hg38.chr6_GL000254v2_alt   473727 38 +   4827813 ctcttttcgcacacgctggagtgtaatggcacgatctc
s panTro5.chr6             29454786 38 + 175400573 ctcttttcgcacacgctggagtgtaatggcacgatctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29690755 38 + 173848474 CTCTTTTCgcacacgctggagtgtaatggcacgatctc
i panPan2.chr6             M 250 C 0
s gorGor5.CYUI01015250v1    5481167 38 +   6154872 ctcttttcgcacaggctggagtgtaatggcacgatctc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29686224 38 + 172585720 ctcttgtcccacaggctggggtgtaatggtgcaatctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29348895 38 - 170955103 ctcttgtcccacaggctggggtgtaatggtgcaatctt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      84216 35 +    766320 ctcttgt-ccacaggct-gggtgtaatggt-caatctt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28605053 38 -  71996105 ctcttgtcccacaggctggggtgtaatggtgcaatctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      53109 38 -    352859 ctcttgtcccacaggctggggtgtaatggtgcaatctt
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570037           355199 55 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1680107 291 -   2232465 I
e colAng1.NW_012115566v1    2211405 875 -   3067355 M
e nomLeu3.chr1a            74386011 1771 + 122973662 I

a score=835044.000000
s hg38.chr6_GL000254v2_alt   473765 234 +   4827813 ggctcactgcaacctccgcctcctgggttaaagcaattctcctgcctcagcctcctga-gtagctggga-ttacaggcacccaccaccatgcctggctaattttgtatttttag-tagagacggggtttctccatcttggtcaggctggtctcgaactcccgacctcagatgatctgcctgccttggcctccc-aaagtgctgggacctcacctgtagtgtgagccac--ctcccggccA
s panTro5.chr6             29454824 234 + 175400573 agctcactgcaacctccgcctcctgggttcaagcaattctcctgcctcagcctcctga-gtagctggga-ttacaggcacccaccaccatgcctggctaattttgtacttttag-tagagacggggtttctccatcttggtcaggctggtctcgaactccagacctcagatgatctgcctgccttggcctccc-aaagtgctgggacctcacctgtagtgtgagccac--ctcccggccA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29690793 234 + 173848474 agctcactgcaacctccgcctcctgggttcaagcaattctcctgcctcagcctcctaa-gtagctggga-ttacaggcacccaccaccatgcctggctaattttgtatttttag-tagagacggggtttctccatcttggtcaggctggtctcgaactccagacctcagatgatctgcctgccttggcctccc-aaagtgctgggacctcacctgtagtgtgagccac--ctcccggccA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5481205 229 +   6154872 ggctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagcctcctga-gtagctggga-ttacaggcacccaccaccatgcctggctaattttgtatttttag-tagagacggggtttctccatcttggtcaggctggtctcgaactcccgacctcagatgatctgcctgccttggcctccc-aaagtgctgggattaca-----gttgtgagccac--ctcccggccA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74387782 229 + 122973662 ggctcactgcaacctccgcctcctgggttcaagcaattctcctggctcagcctcctga-atagctggga-ttacaggcacccaccaccaagcctggctaatttggtatttttag-tagagacggggtttctccatcttggtcaggctggtcttaaactcctgacctcagatgatctgcctgcctcggcctccc-aaagtgctgggattaca-----ggtgtgagccac--tgccaggccA
i nomLeu3.chr1a            I 1771 C 0
s rheMac8.chr4             29686262 231 + 172585720 ggctcactgcgacctctgcctcccatgttcaagcgattctcctgcctcagcttcctga-gtagctggga-ttacaggcacctgccaccatgcctggctaattttgtatttttag-tagagacggggtttctccatcttgctcaggctggtcttgaactcccaacctcaggtgatctgcccgccttggcctccc-aaagtgctgggattaca-----ggcgtgagccaccacgcctggccG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29348933 231 - 170955103 ggctcactgcgacctccgcctcccatgttcaagcgattctcctgcctcagcttcctga-gtagctggga-ttacaggcacctgccaccatgcctggctaattttgtatttttag-tagagacggggtttctccatcttgctcaggctggtcttgaactcccaacctcaggtgatctgcccgccttggcctccc-aaagtgctgggattaca-----ggcgtgagccaccacgcctggccG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      84251 230 +    766320 ggctcactgcaa-ctccgcctcccatgttcaagcgattctcctgcctcagcttcctgaggtagct-gga-ttacaggcacctgccaccatgcctggctaattttgtatttttagttagagac-gggtttctccatcttgctcaggctggtcttgaactctcgacctcaggtgatccgcctgccttggcctcccaaaagtgctgggattaca-----ggcgtga-ccaccacgcctggccG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28605091 232 -  71996105 ggctcactgcaacctccgcctcccatgttcaagcgattctcctgcctcagcttcctga-gtagctgggatttacaggcacctgccaccatgcctggctaattttgtatttttag-tagaaacggggtttctccatcttgctcaggctggtcttgaactcccgacctcaggtgatctgcccgccttggcctccc-aaagtgctgggattaca-----ggcgtgagccaccacgcctggccg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      53147 231 -    352859 ggctcactgcaacctccgcctcccatgttcaagtgattctcctgcctcagcttcctga-gtagctggga-ttacaggcacctgccaccatgcctggctaattttgtatttttag-tagagacggggtttctccatcttgctcaggctggtcttgaactcccgacctcaggtgatctgcccgccttggcctccc-aaagtgctgggattaca-----ggcgtgagccaccacgcctggccG
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570037           355199  55 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1680107 291 -   2232465 I
e colAng1.NW_012115566v1    2211405 875 -   3067355 M

a score=755911.000000
s hg38.chr6_GL000254v2_alt   473999 156 +   4827813 TATCATGTATTTTTATAAATTGTAAACTGACATATGTAAAAC--AATCATTTTCTAATTTATAAAATTTTCTTGATATGCAGTTTTTGAAGCTATGTAACATTCTTTTTTAAATTAATA-------------ATTCatatatacattatatatg-----tac-atatatataCTTTC
s panTro5.chr6             29455058 156 + 175400573 TATCATGTATTTTTATAAATTGTAAACTGACATATGTAAAAC--AATCATTTTCTAATTTATAAAATTTTCTTGATATGCAGTTTTTGAAGCTATGTAACATTCTTTTTTAAATTAATA-------------ATTCatatatacattatatatg-----tac-atatatataCTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29691027 156 + 173848474 TATCATGTATTTTTATAAATTGTAAACTGACATATGTAAAAC--AATCATTTTCTAATTTATAAAATTTTCTTGATATGCAGTTTTTGAAGCTATGTAACATTCTTTTTTAAATTAATA-------------ATTCatatatacattatatatg-----tac-atatatataCTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5481434 156 +   6154872 TATCATGTATTTTTATAAATTGTAAACTGACATATGTAAAAC--AATCATTTTCTAATTTATAAAATTTTCTTGATATGCAGTTTTTGAAGCTATGTAACATTCTTTTTTAAATTAATA-------------ATTCatatatacattatatatg-----tac-atatatataCTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74388011 158 + 122973662 TATCATGTATTTTTACAAGTTGGAAACTGACATATGTAAAACATAATCATTTTCTAATTTATAAAATTTTCTTGATATGCAGTTTTTGAAGCTATGTAACATTCTTTTTTAAATTAATA-------------ATTCatgtatacattatatatg-----tac-atatatataCTTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29686493 157 + 172585720 TATCATGTATTTTTACAAATTGTAAACTGACATATGTAAAACATAATCATTTTCTAATTTATAAAATTTTCTTGATATGCAGTTTTTGAAGC-ATATAACATTCCTTTTTAAATCAATA-------------ATTCatatatacattatatata-----tac-atatatgtaCTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29349164 157 - 170955103 TATCATGTATTTTTACAAATTGTAAACTGACATATGTAAAACATAATCATTTTCTAATTTATAAAATTTTCTTGATATGCAGTTTTTGAAGC-ATATAATATTCCTTTTTAAATCAATA-------------ATTCatatatacattatatata-----tac-atatatgtaCTTTC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      84481 158 +    766320 TATCATGTATTTTTACAAATTGTAAACTGACATATGTAAAACATAATCATTTTCTAATTTATAAAATTTTCTTGATATGCAGTTTTTTGAAG-CTATAACATTCCTTTTTAAATCAATA-------------ATTCatatatacattatatata-----tacgatatatgtaCTTTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28605323 157 -  71996105 tatcatgtatttttaCAAATTATAAACTGACATATGTAAAACATAATCATTTTCTAATTTATAAAATTTTCTTGATATGCAGTTTTTGAAGC-ATATAACATTCCTTTTTAAATCAATA-------------ATTCatatatacattatatata-----tac-atatatgtaCTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      53378 157 -    352859 TATCATATATTTTTACAAATTGTAAACTGACATATGTAAAACATAATCATTTTCTAATTTATAAAATTTTCTTGATATGCAGTTTTTGAAGC-ATATAACATTCCTTTTTAAATCAATA-------------ATTCatatatacattatatata-----tac-atatatgtaCTTTC
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2212282 156 -   3067355 TATCATGTATTTTTACAAATTGTAAACTGACATATATAAAACATAATCATTTTCTAATTTATAAAATGTTCTTG-TATGCAGTTTTTAAAGC-ATATAACGTTCCTTTTTAAATCAATA-------------ATTCatatatacattatatata-----tac-atatatgtaCTTTC
i colAng1.NW_012115566v1   M 875 C 0
s dasNov3.JH570037           355254 172 -    859332 TATAGTGCATTTTTATAAACTTTAAAATCCTATAAGTAGAATGCTATTATTTCT---GTCATAGCATTTTCTTAATACAC-GTTTTTCTAGTTGTATAACATTGtttaataaaagaatatttacataaaaatattttaatgtaaatcatatacataaattac-atatatataattCC
i dasNov3.JH570037         I 55 I 4
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1680107 291 -   2232465 I

a score=851125.000000
s hg38.chr6_GL000254v2_alt   474155 158 +   4827813 TCATTCTTCTACAATTAAA----TATA--TTTTCTGAATTTGT-CACCTTATACTATAGATCATTCAGAATAAAGTGCTTTCCATATGTGATCTCTTTTAG----ACTGTTTATCAGAAATGACGTCAGTGAATT-AAAAGTATTAGTATAggctggg--tgaggtggctta
s panTro5.chr6             29455214 158 + 175400573 TCATTCTTCTACAATTAAA----TATA--TTTTCTGAATTTGT-CACCTTATACTATAGATCATTCAGAATAAAGTGCTTTCCATATGTGATCTCTTTTAG----ACTGTTTATCAGAAATGACGTCAGTGAATT-AAAAGTATTAGTATAggctggg--tgaggtggctta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29691183 158 + 173848474 TCATTCTTCTACAATTAAA----TATA--TTTTCTGAATTTGT-CACCTTATACTATAGATCATTCAGAATAAAGTGCTTTCCATATGTGATCTCTTTTAG----ACTGTTTATCAGAAATGACGTCAGTGAatt-aaaagtattagtataggctggg--tgaggtggctta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5481590 158 +   6154872 TCATTCTTCTACAATTAAA----TATA--TATTCTGAATTTGT-CACCTTATACTATAGATCATTCAGAATAAAGTGCTTTCCATAGGTGATCTCTTTTAA----ACTGTTTATCAGAAATGACGTCAGTGAATT-AAAAGTATTAGTATAggctggg--tgaggtggctta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74388169 162 + 122973662 TCGTTCTTCCACAATTAAATATCTATA--TTATCTGAATTTGT-CACCTTATACTATAGATCATTCAGAATAAAGTGCTTTCCATATGTGATCTCTTTTAG----ACTGTTTATCAGAAATGATGTCAGTGAATT-AAAAGTATTAGTATAggctggg--tgaggtggctta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29686650 162 + 172585720 CCAATCTTCTACAACTAAATATCTATA--TTTTCTGAATTTGT-CACCTTATATTATAGATCATTCAGAATAAAGTGCTTTTCATATGTGATCTTCTTTAG----ACTGTTTATCAGAAATGAAGTCAGTGAATT-AAAAGTGTTAGTGTAggctggg--tgtagtggctca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29349321 162 - 170955103 CCAATCTTCTACAACTAAATATCTATA--TTTTCTGAATTTGT-CACCTTATATTATAGATCATTCAGAATAAAGTGCTTTTCATATGTGATCTTCTTTAG----ACTGTTTATCAGAAATGAAGTCAGTGAATT-AAAAGTGTTAGTGTAggctggg--tgtagtggctca
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      84639 163 +    766320 CCAATCTTCTACAACT-AATATCTATA--TTTTCTGAATTTGTCCACCTTATATTATAGATCATTCAGAATAAAGTGCTTTTCATATGTGATCTTCTTTAG----ACTGTTTATCAGAAATGAAGTCAGTGAATT-AAAAGTGTTA-TGTAGGTTGGGATGGTAgtggctca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28605480 162 -  71996105 CCAATCTTCTACAACTAAATATCTATA--TTTTCTGAATTTGT-CACCTTATATTATAGATCATTCAGAATAAAGTGCTTTTCATATGTGATCTTCTTTAG----ACTGTTTATCAGAAATGAAGCCAGTGAATT-AAAAGTGTTAGTGTAggctggg--tgtggtggctca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      53535 162 -    352859 CCAATCTTCTACAACTAAATATCTATA--TTTTCTGAATTTGT-CACCTTATATTATAGATCATTCAGAATAAAGTGCTTTTCATATGTGATCTTCTTTAG----ACTGTTTATCAGAAATGAAGTCAGTGAATT-AAAAGTGTTAGTGTAggctggg--tgtagtggctca
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2212438 162 -   3067355 CCAATCTTCTACAACTAAATATCTATA--TTTTCTGAATTTGT-CACCTTATATTATAGATCATTCAGAATAAAGTGCTTTTCATATGTGATCTTCTTTAG----ACTCTTTATCAGAAATGAAGTCAGTGAATT-AAAAGTGTTAGTGTGggctggg--tgtagtggctca
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1680398 142 -   2232465 TCATTCCTTTACTATTAAATACTTATATTTTTTCTGAACTTGT-CACTTTATGCTATAGATAATTCAGAATAAATTGCTTTCCATA----------TTTAA----CTTATTTTTCAGAAATGGAGTTAGTGGATTAAAAAATATTACTACA---------TGTAAT------
i otoGar3.GL873742         I 291 C 0
s dasNov3.JH570037           355430 165 -    859332 TCATTCTCCTAATATTAAATATTTACA--CTCTTTAAATTTGT-CCCTTTATACTAGAGATCATTTAGAATACAGCTCTTTCCATGTATAACCTTCTTTTGTTTTATTGTTTACCAGAAATGGGGTCAGAAACGA-AAAAGTATTAACATATGCGATG--TA-AATGGCCCA
i dasNov3.JH570037         I 4 I 142
e canFam3.chr35            26138974 64429 +  26524999 I

a score=163182.000000
s hg38.chr6_GL000254v2_alt   474313 35 +   4827813 cactgtaatcctagcactttgggaggctgaagtgg
s panTro5.chr6             29455372 35 + 175400573 cgctgtaatcctagcactttgggaggctgaagtgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29691341 35 + 173848474 cgctgtaatcctagcactttgggaggctgaagtgg
i panPan2.chr6             C 0 I 226
s gorGor5.CYUI01015250v1    5481748 35 +   6154872 cgctgtaatcctagcactttgggaggctgaagtgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74388331 35 + 122973662 cgctgtaatcctagcactgtgggaggctgaagtgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29686812 29 + 172585720 cgctgtaatcctagcacttcgggaggct------g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29349483 35 - 170955103 cgctgtaatcctagcacttcgggaggctgaagtgg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      84802 35 +    766320 cgctgtaatcctagcacttcgggaggctgaagtgg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28605642 35 -  71996105 cgctgtaatcctagcacttcgggaggctgaattgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      53697 35 -    352859 cgctgtaatcctagcacttcgggaggctgaagtgg
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2212600 35 -   3067355 cactgtaatcctagcacttcgggaggctgaagtgg
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037           355595 142 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1680540  0 -   2232465 C

a score=783582.000000
s hg38.chr6_GL000254v2_alt   474348 222 +   4827813 gaggattacttgaattcaggagtttgagaccagcctgggtgacatgatgaactcctgtttctactaaaaatgc------aaaaaaaaaaaattagccaggcatggtggtgcatacctatagtgtcagctactctgaagactgaggtgggaggattgcttgagcctgggaggtggaggtcacagtgagccaagattgtgccagtgcactgcagctggggcaacaaagca
s panTro5.chr6             29455407 228 + 175400573 gaggattacttgaattcaggagtttgagaccagcctgggtgacatgatgaactcctgtttctactaaaaatgcaaaaaaaaaaaaaaaaaattagccaggcatggtggtgcatacctatagtgtcagctactgtgaagactgaggtgggaggattgcttgagcctgggaggtggaggtcacagtgagccaagattgtgccagtgcactccagctggggcaacaaagca
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5481783 221 +   6154872 gaggattacttgaattcaggagtctgagactagcctgggtgacatggtgaactactgtttctactaaaaatgc-------aaaaaaaaaaattagccaggcatggtggtgcatgcctatagtgtcagctactctgaagactgaggtgggaggattgcttgagcctgggaggtggaggtcacagtgagccaagattgtgccagtgcactccagctggggcaacaaagca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74388366 220 + 122973662 gaggattacttgaattcaggagt-tgagaccagcctgggtgacatggtgagctcctgtttctactaaaaatgc-------caaaaaaaaaattagccaggcatggtggtgcatgcctatagtgtcagctactctgaagactgaggtgggaggattgattgatcctgggaggtggaggtcacagtgagccaagattgtgccagtgcactccagccggggcaacaaagca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29686841 218 + 172585720 aaggaatgctttaattcaggaatttgagaccagcctgggtgacatggtgagaccctgtctctactaaaaatgc----------aaaaaaaattagccagacatggtggtgcatgcctatagtgtcagctactctgaagactgaggtgggaggattgcttgagcctgggaggtggaggtcacagggagccaagagtgtgccagtgcactccagcctgggcaagagagta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29349518 218 - 170955103 aaggattgctttaattcaggaatttgagaccagcctgggtgacatggtgagaccctgtctctactaaaaatgc----------aaaaaaaattagccagacatggtggtgcatgcctatagtgtcagctactctgaagactgaggtgggaggattgcttgagcctgggaggtggaggtcacagggagccaagagtgtgccagtgcactccagcctgggcaagagagta
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      84837 218 +    766320 aaggattgctttaattcaggaatttgagaccagcctgggtgacatgatgagaccctgtctctactaaaaatgc----------aaaaaaaattagccagacatggtggtgcatgcctatagtgtcagctactctgaagactgaggtgggaggattgcttgagcctgggaggtggaggtcacagggagccaagattgtgccagtgcactccagcctgggcaagagagta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28605677 218 -  71996105 aaggattgctttaattcaggaatttgagaccagcctgggtgacatggtgagaccttgtctctactaaaaatgc----------aaaaaaaattagccagacatggtggtgcatgcctatagtgtcagctactctgaagactgaggtgggaggattgcttgagcctgggaggtggaggtcacagggagccaagattgtgccagtgcactccagtctaggcaagagagta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      53732 218 -    352859 aaggattgctttaattcaggaatttgagaccagcctgggtgacatgatgagaccctgtctctactaaaaatgc----------aaaaaaaattagccagacatggtggtgcatgcctatagtgtcagctactctgaagactgaggtgggaggattgcttgagcctgggaggtggaggtcacagggagccaagattgtgccagtgcactccagcctgggcaagagagta
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2212635 218 -   3067355 gaggattgctttaattcaggagtttgagaccagcctgggtgacatggtgagaccctgtctctactaaaaatgc----------aaaaaacattagccagacatggtggtgcatgcctatagtgtcagctactctgaagactgaggtgggaggattgcttgagcctgggaggtggaggttacagggagccaagattgtgccagtgcactccagcctgggcaacagagta
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1680540  47 -   2232465 -----------------------------------------ACA-----------TATTCCTAATTAGTTTTC----------AAAGGA----------------------------------------------------------GGATAACTACTTGTGCTTGG-------------------------------------------------------------
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037           355595 142 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e panPan2.chr6             29691376 226 + 173848474 I

a score=659907.000000
s hg38.chr6_GL000254v2_alt   474570 183 +   4827813 agaccctgtctcaagaaaaaaaaTTTTTAGAAGTGTTAGTATATAACAAATACATATTTCGAATTGCTTTTAAAAGGAATAGAATTGTTTGGACTTGAATTATAATAGAAAAGTAATTTTAGAC--AACTTATAAAAGCATAAATCTCACAAACATCATTGAAGAGatatacatatgtgtgtgtg
s panTro5.chr6             29455635 183 + 175400573 agaccctgtctcaagaaaaaaaTTTTTTATAAGTGTTAGTATATAACAAATACATATTTTGAATTGCTTTTAAAAGGAATAGAATTGTTTGGACTTGAATTATAATAGAAAAGTAATTTTAGAC--AACTTATAAAAGCATAAATCTCACAAACATCATTGAAGAGCTATACgtgtgtgtgtgtg
i panTro5.chr6             C 0 I 10
s gorGor5.CYUI01015250v1    5482004 183 +   6154872 agaccctgtctcaagaaaaaaaTTTTTTAGAAGTGTTAGTATATTACAAATACATATTTCTAATTGCTTTTAAAAGGAATAGAATTGTTTGGACTTGAATTATAATAGAAAAGTAATTTTAGAC--AACTTATAAAAGCATAAATCTCACAAACATCATTGAAGAGCtatacatatatgtgtgtg
i gorGor5.CYUI01015250v1   C 0 I 4
s nomLeu3.chr1a            74388586 180 + 122973662 aaaccctgtctcaagaaaaaaaaTTTTTTAAAGTGTTAGTATATAACAAATACATATTTCGAATTGCTTTTAAAAGGAATAGAATTCTTTGGACTTGAATTATAATAGAAAAGTAATTTTAGAC--AACTTATAAAAGCATAAATCTCACAAA---CATTGAAGAGCTATACATACGTGTGTGTG
i nomLeu3.chr1a            C 0 I 2
s rheMac8.chr4             29687059 181 + 172585720 agaccctgtctcaagaaaaaaaTTTTTACAAAGCATTAGTATATAACAAATACATATTTTGAATTGCTTTTAAAAGGAATAGAATTGTTTGGACTTGAATTATAATAGAAAAGTAATTTTGGAC--AACTTATAAAAGCATAAATCTCACAAACATCACTGAAGAACtatatatatatgtgtg--
i rheMac8.chr4             C 0 I 2
s macFas5.chr4             29349736 181 - 170955103 agaccctgtctcaagaaaaaaaTTTTTACAAAGCATTAGTATATAACAAATACATATTTTGAATTGCTTTTAAAAGGAATAGAATTGTTTGGACTTGAATTATAATAGAAAAGTAATTTTGGAC--AACTTATAAAAGCATAAATCTCACAAACATCACTGAAGAACtatatatatatgtgtg--
i macFas5.chr4             C 0 I 2
s cerAty1.NW_012002711v1      85055 181 +    766320 agaccctgtctcaagaaaaaaaTTTTTAAAAAGCATTAGTATATAACAAATACATATTTTGAATTGCTTTTAAAAGGAATAGAATTGTTTGGACTTGAATTATAATAGAAAAGTAATTTTGGAC--AACTTATAAAAGCATAAATCTCACAAACATCACTGAAGAACtatatatatgtgtgtg--
i cerAty1.NW_012002711v1   C 0 I 6
s chlSab2.chr17            28605895 183 -  71996105 agaccctgtctcaagaaaaaaaTTTTTAAAAAGCATTAGTATATAACAAATACATATTTTGAATTGCTTTTAAAAGGAATAGAATTGTTTGGACTTGAATTATAATAGAAAAGTAATTTTGGAC--AACTTATAAAAGCATAAATCTCACAAACATCACTGAAGAACtatatatatgtgtgtgtg
i chlSab2.chr17            C 0 I 8
s manLeu1.NW_012099655v1      53950 183 -    352859 agaccctgtctcaagaaaaaaaTTTTTAAAAAGCATTAGTATATAACAAATACATATTTTGAATTGCTTTTAAAAGGAATAGAATTGTTTGGACTTGAATTATAATAGAAAAGTAATTTTGGAC--AACTTATAAAAGCATAAATCTCACAAACATCACTGAAGAACTATATATAtgtgtgtgtg
i manLeu1.NW_012099655v1   C 0 I 14
s colAng1.NW_012115566v1    2212853 183 -   3067355 agattctgtctcaagaaaaaaaTTTTTAAAAAGCATTAGTATATAACAAATACATATTTCGAATTGCTTTTAGAAGGAATAGAATTGTTTGGACTTGAATTATGATAGAAAAGTAATTTTGGAC--AACTTATAAAAGCATAAATCTCACAAACATCACTGAAGAACtatatatatgtgtgtgtg
i colAng1.NW_012115566v1   C 0 I 18
s otoGar3.GL873742          1680587  69 -   2232465 -------------------------------------ATTATATA-------------------------------------------------------CATAAAAGAAAAGTAATTTTAGATGGAGATTATAAAAGA--GAATCCCACAAG-------------------ATAT-TGAGTG--
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037           355737 119 -    859332 ATATCTTTCCAAAAGAAACAAGAATCTGAAAA-----AGTAGAGAATCAAGGCATTT-----------------AGGGAAAGAA-------AAATAAAATTATAATAG---------TTTTGAC--AGATACTGCAACAATGTGCTCCATAAG-------------TTATAC-------------
i dasNov3.JH570037         I 142 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e panPan2.chr6             29691376 226 + 173848474 I

a score=1327180.000000
s hg38.chr6_GL000254v2_alt   474753 264 +   4827813 tatatatatatatatat--------------------atGCCTCCTCTTTTGATTTTCCTTATATCTTTTCAATTTTAATGTTGAATCCTAAATTATCCTCAGGGTTGTAAAGTTGCTTTTATTTTCCCTATTCCCCTTTAAATCctaaggtatacaatagtggtacttcctgtcatatcttcatttgcattagcagtcagacc---------------cctgaaataaatcagacagatattgg--gatgacagtagcaaattaccacagattgaaataagtagtagccccaattgaatc
s panTro5.chr6             29455828 264 + 175400573 tatatatatatatatat--------------------atGCCTCCTCTTTTGATTTTCCTTATATCTTTTCAATTTTAATGTTGAATCCTAAATTGTCCTCAGGGTTGTAAAGTTGCTTTTATTTTCCCTATTCCCCTTTAAATCctaaggtatacaatagtggtacttcctgtcatatcttcatttgcattaccagtcagacc---------------ccttaaataaatcagacagatattgg--gatgacagtagcaaattaccacagattgaaataagtagtagccccaattgaatc
i panTro5.chr6             I 10 C 0
s panPan2.chr6             29691602 264 + 173848474 tatatatatatatatat--------------------atGCCTCCTCTTTTGATTTTCCTTATATCTTTTCAATTTTAATGTTGAATCCTAAATTGTCCTCAGGGTTGTAAAGTTGCTTTTATTTTCCCTATTCCcctttaaatcctaaggtatacaatagtggtacttcctgtcatatcttcatttgcattaccagtcagacc---------------ccttaaataaatcagacagatattgg--gatgacagtagcaaattaccacagattgaaataagtagtagccccaattgaatc
i panPan2.chr6             I 226 C 0
s gorGor5.CYUI01015250v1    5482191 263 +   6154872 tgtatatatatatatat--------------------atGCCTCCTCTTTTGATTTTCCTTATATCTTTTCAA-TTTAATGTTGAATCCTAAATTATCCTCAGGGTTGTAAAGTTGCTTTTATTTTCCCTATTCCcctttaaatcctaaggtatacaatagtggtactttctgtcatatcttcatttgcattaccagtcagacc---------------cctgaaataaatcagacagatattgg--gatgacagtagcaaattaccacagattgaaataagtagtagccccaattgcatc
i gorGor5.CYUI01015250v1   I 4 C 0
s nomLeu3.chr1a            74388768 284 + 122973662 TGTGTATATATATATATGCCTCCTTATATATTTTCAGATGCCTCCTCTTTTGATTTTCCTTATATATTTTCAGTTTTAATATTGAATCCTAAATTATCCTCAGGGTTGTAAAGTTGCTTTTATTTTCCCTATTCCCCTTTAAATCctaaggtatacaatagtggtacttcctgtcatatcttcatttgcattaccagtcagacc---------------cctgaaataaatcagacagatattgg--gatgacagtagcaaattgccacaaattgaaataagtagtagctccaattgaatc
i nomLeu3.chr1a            I 2 C 0
s rheMac8.chr4             29687242 279 + 172585720 tgtgtatatatatatat--------------------atGCCTCCTCTTTTGATTTTCCTTATATCTTTTCATTTTTAATATTGAATCCTAAATTATCCTCAGGGTTGTAAAGTTGCTTTTATTTTCCCTATTCcccttaaaatcctaaagtgtgcagtagtggtacttcctgtcatatcttcatttgcattaccagtcagactggtaatttcagactgtctgaaataaatcagacagatattgg--gatgacaatagcaaattaccacaaattgaaacaagtagtagccgcagttgaatc
i rheMac8.chr4             I 2 C 0
s macFas5.chr4             29349919 264 - 170955103 tgtgtatatatatatat--------------------atGCCTCCTCTTTTGATTTTCCTTATATCTTTTCATTTTTAATATTGAATCCTAAATTATCCTCAGGGTTGTAAAGTTGCTTTTATTTTCCCTATTCcccttaaaatcctaaagtgtgcagtagtggtacttcctgtcatatcttcatttgcattaccagtcagacc---------------cctgaaataaatcagacagatattgg--gatgacaatagcaaattaccacaaattgaaacaagtagtagccgcagttgaatc
i macFas5.chr4             I 2 C 0
s cerAty1.NW_012002711v1      85242 264 +    766320 tgtgtgtatatatatat--------------------ATGCCTCCTCTTTTGATTTTCCTTATATTTTTTCATTTTTAATATTGAATCCTAAATTATCCTCAGGGTTGTAAAGTTGCTTTTGTTTTCCCTATTCcccttaaaatcctaaagtgtgcagtagtggtacttcctgtcatatcttcatttgcattaccagtcagacc---------------cctgaaataaatcagacagatattgg--gatgacaatagcaaattaccacaaattgaaacaagtagtagccgcagttgaatc
i cerAty1.NW_012002711v1   I 6 C 0
s chlSab2.chr17            28606086 264 -  71996105 tgtatatatatatatat--------------------gtgCCTCCTCTTTTGATTTTCCTTATATCTTTTCATTTTTAATATTGAATCCTAAATTATCCTCAGGGTTGTAAAGTTGCTTTTATTTTCCCTATTCcccttaaaatcctaaagtgtgcagtagtggtacttcctgtcatatcttcatttgcgttaccagtcagacc---------------cctgaaataaatcagacagatattgg--gatgacaatagcaaattatcacaaattgaaacaagtagtagccccagttgaatc
i chlSab2.chr17            I 8 C 0
s manLeu1.NW_012099655v1      54147 264 -    352859 tgtgtgtatatatatat--------------------atGCCTCCTCTTTTGATTTTCCTTATATCTTTTCATTTTTAATATTGAATCCTAAATTATCCTCAGGGTTGTAAAGTTGCTTTTATTTTCCCTATTCcccttaaaatcctaaagtgtgcagtagtggtacttcctgtcatatcttcatttgcattaccagtcagacc---------------cctgaaataaatcagacagatattgg--gatgacaatagcaaattaccacaaattgaaacaagtagtagccacagttgaatc
i manLeu1.NW_012099655v1   I 14 C 0
s colAng1.NW_012115566v1    2213054 264 -   3067355 tatatatatatatatat--------------------GTGCCTCCTCTTTTGATTTTCCTTGTATCTTTTCATTTTTAATATTGAATTCTAAATTATCCTCAGGGTTGTAAAGTTGCTTTTATTTTCCCTATTCcccttaaaatcctaaagtgtgcagtagtggtacttcctgtcatatcttcatttgcattaccagtcagacc---------------cctgaaagaagtcagacagatattgg--gatgacaatagcaaattaccacaaattgaaacaagtagtagccccagttgaatc
i colAng1.NW_012115566v1   I 18 C 0
s otoGar3.GL873742          1680656 220 -   2232465 ---AAAAAAATCAATGT--------------------ATTTCTCCTGTTTTAGTTTCTCTTATTTCTTGACAATTTTAATACAAAATCCTGAATTAACCCTAAGGCAATAAAGTTGGTTTTATTTT---------CCTTAAAACCCTAGAAC-TGCAGTGGTGATAGCATTTACCATATCTCTGTTTCCTTTACCCACC-TATC---------------CCTGAAA-AAATAAGCCAGATCTTGAATGATGACAACAGCCTATTGC-------------------------------AATC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037           355856 189 -    859332 -------------------------------------------------------TTCCTAGGGAAT----ATTTTTGATACTGGATATTAA-------TCATGGTCATTAAGTTGCCTTCATTT----------CCTT------------------ATGTTAGCAAGTTCCTTTAAATCTCCCTTTGCTTCACCTCGTGTGTC---------------CTTTACAAAAATCCAGCAGACTGTG---GATGATGACTGCAAATCCTCACAAATTCAAATAAGAGGTAGTACAATTTGAATC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I

a score=911492.000000
s hg38.chr6_GL000254v2_alt   475017 184 +   4827813 tgctggaagagatatgttatccttgatagagtatattagcatgttactgagtaccctgtatgcatacattgatctggtaaatg-ttttctttttcatccttat----------------------------caggaaacatgatcagggag--tttgcactcacttggagctgaca-atactataccatgtcccagagctatgctaggtttttcat
s panTro5.chr6             29456092 184 + 175400573 tgctggaagagatatgttatccttgatagagtatattagcatgttactgagtaccccgtatgcatacattgatctggtaaatg-ttttctttttcatccttat----------------------------caggaaacatgatcagggag--tttgcactcacttgcagctgaca-atactataccatgtcccagagctatgctaggtttttcat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29691866 184 + 173848474 tgctggaagagatatgttatccttgatagagtatattagcatgttactgagtaccccgtatgcatacattgatctggtaaatg-ttttctttttcatccttat----------------------------caggaaacatgatcagggag--tttgcactcacttgcagctgaca-atactataccatgtcccagagctatgctaggtttttcat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5482454 184 +   6154872 tgctggaagaaatatgttatccttgatagagtatattagcatgttactgagtaccccgtatgcattcattgatctggtgaatg-ttttctttttcatccttat----------------------------caggaaacatgatcagggag--tttgcactcacttggagctgaca-atactataccatgtcccagagctatgctaggtttttcat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74389052 184 + 122973662 tgctggaagacatatgttatccttgagagagtatattagcatgatactgagtacacagtatgcatacattgatctggtaaatg-ttttctttttcatccttat----------------------------taggaaacatgatcagggag--tttgcactcacttggagctgaca-atactataccatgtcccagagctatgctaggtttttcat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29687521 185 + 172585720 tgctggaagagatatgttatccttgatagagtatattagcatgttactgagtacatagtacacattcattgatctggtaaatgtttttctttttcatccttat----------------------------taggaaacatgatcagggag--tttgcactcacttggagctgaca-atactataccatgtctcagggctatgctaggtttttcat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29350183 185 - 170955103 tgctggaagagatatgttatccttgatagagtatattagcatgttactgagtacatagtacgcattcattgatctggtaaatgtttttctttttcatccttat----------------------------taggaaacatgatcagggag--tttgcactcacttggagctgaca-atactataccatgtctcagggctatgctaggtttttcat
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      85506 185 +    766320 tgctggaagagatatgttatccttgatagagtatattagcatgttactgagtacatagtacgcattcattgatctggtaaatgtttttctttttcatccttat----------------------------taggaaacatgatcagggag--tttgcactcacttggagctgaca-atactataccatgtctcagggctatgctaggtttttcat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28606350 185 -  71996105 tgctggaagagatatgttatccttgatagagtatattagcatgttactgagtacatagtacgcattcattgatctggtaaatgtttttctttttcatccttat----------------------------taggaaacatgatcagggag--tttgcactcacttggagctgaca-atactataccatgtctcagggctatgctaggtttttcat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      54411 185 -    352859 tgctggaagagttatgttatccttgatagagtatattagcatgttactgagtacatagtacgcattcattgatctggtaaatgtttttctttttcatccttat----------------------------taggaaacatgatcagggag--tttgcactcacttggagctgaca-atactataccatgtcccagggctatgctaggtttttcat
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2213318 184 -   3067355 tgttggaagagatatgttatccttgatagagtgtattagcatgttactgagtacatagtatgcattcattgatctggtaaatg-ttttctttttcatccttat----------------------------taggaaacatgatcagggag--tttgcactcacttggagctgaca-atactataccatgtcccagggctatgctaggtttttcat
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037           356045 188 -    859332 ----TGACCAGC-------TCTTCGATAGAGCTTGTTAGCATGTTCCTTGGTGCATGGCA-GCAGCCACTGATCTGGTGAATG-TGTTTTCTCCCTTCCTTATCAGGTATCCCTATAGAAAAGACTCCTGGCAGGAAAGAGGATCAAAAAGGATCTGCATTGTCCTGGAAGAGACGCAGTCTACAT---------------TGTTAATTCTCCCAC
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1680876   0 -   2232465 C

a score=1456544.000000
s hg38.chr6_GL000254v2_alt   475201 287 +   4827813 ---cttccatcataaaatactgaagagaacgggactagctgtatattctgtaggccgtcacactggccaactatatctaacacatcatgcgtatcagacaat---atgaacaagaagtggtcaatacattaaaagccttgataagacacatgtgatccagagagtgagtgttgcactccataaagattcagggacctaaagca----t----aaaagttttaagtgtttattggtctggggcactatgagacattctatctaaagt-aaaggataca-tttttgcattatgcatttcctatca
s panTro5.chr6             29456276 287 + 175400573 ---cttccatcataaaatactgaagagaactggactagctgtatattctgtaggccgtcacactggccaactatatctaacacatcatgcgtatcagacaat---atgaacaagaagtggtcaatacattaaaagccttgataagacacatgtgatccagagagtgagtgttgcactccataaagattcagggacctaaagca----t----aaaagttttaagtgtttattggtctggggcactatgagacattctatctaaagt-aaaggataca-tttttgcattatgcatttcctatca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29692050 287 + 173848474 ---cttccatcataaaatactgaagagaactggactagctgtatattctgtaggccgtcacactggccaactatatctaacacatcatgcatatcagacaat---atgaacaagaagtggtcaatacattaaaagccttgataagacacatgtgatccagagagtgagtgttgcactccataaagattcagggacctaaagca----t----aaaagttttaagtgtttattggtctggggcactatgagacattctatctaaagt-aaaggataca-tttttgcattatgcatttcctatca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5482638 287 +   6154872 ---cttccatcataaaatactgaagagaactggactagctgtatattctgtaggccgtcacactggccaactatatctaacacatcatgcgtatcagacaat---atgaacaagaagtggtcaatacattaaaagccttgataagacacatgtgatccagagagtgagtgttgcactccataaagattcagggacctaaagca----t----aaaagttttaagtgtttattggtctggggcactatgagactttctatctaaagt-aaaggataca-tttttgcattatgcatttcctatca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74389236 288 + 122973662 ---cttccatcataaaatactgaagggaacaggactagctgtatattctgtaggccgtcaccctggccaactatatctaacacatcatgcgaatcagacaat---atgaacaagaagtggtcaatacattaaaagccttgataagacacatgtgatccagagagtgagtgttgcactccatgaaaattcagggactgaaagca----t----gaaagttttaggtgcttattgatctggggcactatgagacattctatctaaagtaaaaggataca-tttttgcattatgcatttcctatca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29687706 286 + 172585720 ---cttccatcataaaatactgaagagaactggactagctgtacattctgtaggccatcacactggtcaaccatatctaagacatcatgctaatcagacaat---atgaacaagaagtagttaatacattgaaggccttaataagacacatgtgatccagagagtgagtgttgtactacataaagattcagggacctgaagca----t----aaaaatgtt--gtgtttatagatctggggcattatgagacattctatctaaagt-aaaggatatattttttgcattatgcatttcctatca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29350368 286 - 170955103 ---cttccatcataaaatactgaagagaactggactagctgtacattctgtaggccatcacactggtcaaccatatctaagacatcatgctaatcagacaat---atgaacaagaagtagttaatacattgaaggccttaataagacacatgtgatccagagagtgagtgttgtactccataaagattcagggacctgaagca----t----aaaaatgtt--gtgtttatagatctggggcattatgagacattctatctaaagt-aaaggatatattttttgcattatgcatttcctatca
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      85691 286 +    766320 ---cttccatcataaaatgctgaagagaactggactagctgtacattctgtaggccatcacactggtcaaccatatctaagacatcatgctactcagacaat---atgaaaaagaagtagttaatacattgaaggccttgataagacacatgtgatccagagagtgaatgttgtactccataaagattcagggacctgaagta----t----aaaaatgtt--gtgtttatagatctggggcattatgagacatcctatctaaagt-aaaggatatattttttgcattatgcatttcctatca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28606535 286 -  71996105 ---cttccatcataaaatactgaagagaactggactagctgtacattgtgtaggccatcacactggtcaaccatatctaagacatcatgctaatcagacaat---atgaaaaagaaatagttaatacattgaaggccttgataagacacatgtgatccagagagtgaatgttgtactccataaagattcagggacctgaagca----t----aaaaatgtt--gtgtttatagatctggggcattatgagacattctatctaaagt-aaaggatatattttttgcattatgcatttcctatca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      54596 286 -    352859 ---cttccatcataaaatgctgaagagaactggactagctgtacattctgtaggccatcacacaggtcaaccatatctaagacatcatgctaatcagacaat---atgaaaaagaagtagttaatacattgaaggccttgataagacacatgtgatccagagagtgaatgttgtactccataaagattcagggacctgaagca----t----aaaaatgtt--gtgtttatagatctggggcattatgagacatcctatctaaagt-aaaggatatattttttgcattatgcatttcctatca
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2213502 286 -   3067355 ---cttccatcataaaatactgaagagaaccggactagctgtacattctgtaggccgtcacactggtcaaccatatctaagacatcatgctagtcagacaat---atgaacaagaagtagttaatacattgaaggccttgataagacacatgtgatccagagagtgagtgttgtactccataaagattcagggacctgaagca----t----aaaaatatt--gtgtttattgatctggggcattatgagatattctctctaaagt-aaaggatacattttttacattatgcatttcctatca
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1680876 255 -   2232465 ---cttctgttataagatactgaagagaactgctct---------tcctgcagatcatcacactggtcaaccatatcaatgacatcatgctagttggacaataacatgagcaag--------aatacactgaaggcctttataagacacatgt---------------------cccttatacagattcaggggcctggcacatcagt----aaaagttttagatgtatttttttc-ggggtattatgggaaaaactacctaaggt-aaaggacaca-ttgtggcattatgtatcttctatca
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570037           356233 243 -    859332 CTGCTTTCGT-ATTAGAGCCTGAACAGCCCTGGACTAGCTACACATTGTGCTGGCC-------------CCTCTGTCAAAGACAAGGAGTTAGGCAGAAATT---ATGAGTAAGACACAGCTAAGATTCT-AAGACCTTGGTAGGAC---------------------------ATTCAACAAAGATCCAGGCAC-TGGTGCA----TCAGAGAAAGTTCTAGATG------GGTTTCAGGCATCCTGGGACAT-CTATGCAGATA-AAGGCATCT--CGGCTGCATCTTGGCTCTTCTAGCA
i dasNov3.JH570037         C 0 I 8405
e canFam3.chr35            26138974 64429 +  26524999 I

a score=11119754.000000
s hg38.chr6_GL000254v2_alt   475488 2111 +   4827813 taaaaaagaagcaaagtgcctggcagacctctctgtactttgtagtaagcatatttgacactatcgag-tactgtt------------ctaattcatccacta------------ggtgctgtatttgaatggccttcagggtaagaatgggctctatagcaagtctaAATTTC-----------------------------------------------------------------ACCATAAATGAGGtggaatttatggcaagtttatgggaagatcataacaaaattcttagggttttgataaaactctgctatctacagcacaggattgtatacatttcaaaaataaagccctggtgttttactgaattctgggtagagaaataacatctgaccatggaacaacaaataaccatgcaggcaaaactacccat-atgagctggggactgtctgaaccatcaagttattaggttgagtggatacagagcaatcactgtaacacggcattagtacatccaggattgacca-cagcatgactagagggcagaggcaaacagtatgagcaagtagcccaggacttcatgctattcaccacttttgcatcaatatctcttcttcagaccacacttacgcctccaagagagaacacttccaac--tctaatggaggagaaaaatgtca-agcttggttcattaatgggtcagcttgctatgtgagtccaagtcaaaaaggatgaaga-taaattatagcctcgcttacggtgatcttgaaaaatagt-agtgaggaaaacgcctcccaatggacagagtttcagatggtacccagtcattcactttgtgtggaaagagaagtagtttgaagttagaatatgtataactcataggtagtgataaatggcttaggaggcttttcaggtggctggaaagaaaaagatagaaacacttggaaaaaagaagtctggaacagaggcacatgcataaacatataagagtgaaggtatgaagtgttgcattatttgtattacatgct-aaaactacaagatggaatccatcatagaaaatgaattaagcaactaggtagaaaatgtgacttggcgagcagttattgtcaagagcttctgacatttgccctcattatcctacctgcaatgctagagcaatgagc-------ttatgaatgaagtcaccatgatagtagggatagaagcaatgcatgggtttaacagcatgcattatagccactggtcaaacatccagtcttccatcaataagtgtcccatgcaatg-actggataaaatagtttcccatcaaaagatcaaccagttatttaatgtcaagttgatgacactggactttttctactttga--atgtagcaa--t--tttttttggtaggaatagatacacatactccaggcatgggtttctattcctgaacataagttctcagccagcatgactgtc-taaaggctta-------taggatgtttgacgcagcagcaggagatcccacataccattgtatcagaaaaaagggccgacttaatggcaaagaaagtgtaggagtggacttatgaccatggaatccattggccatatcacatattgcactatcataagtgatctattagagtcatggagggatctgttgaagctacacctgaaattccagctcagatgaaatgtcatccttcaagaccca----gtactttaaatcaattatctttctatggtgctgtgtcctcactaggaagaatgcatgg-tttagaaaccaaaaggtgaa---------agcccttcttagaatccctaccagtaactcatttgagaaatttgtgttttttttctccacaattataagctctgtgagtttagaggttctagctctctaaagggaaatattcccactagggggtacaaaagGTACACTAGGAAGTGTATActttgtttaattatgatggtaaatgaccaaaggcaatgagattaactaaaaaaagccatagtgatcaggggctcagacacttccggatcatgacaccaggtaaaccactgagagcaggagaggtgccagataagggtgagagcaacacagaatgaatagtaagaaggagatggtgacc------atagtttgtaggacttaagaccagccgcagtggtggtcctcttctaagtttcctccagatacagaggcccactatagccctgtaagagcttttccCAGATCTTTTt---ta-a
s panTro5.chr6             29456563 2118 + 175400573 taaaaaagaagcaaagtgcctggcagacctctctgtactttgtagtaagcatatttgacactatcgag-tactgtt------------ctaattcatccacta------------ggtgctgtatttgaatggccttcagggtaagaatgggctctatagcaagtctaaatttc-----------------------------------------------------------------accataaatgaggtggaatttatggcaagtttatgggaagatcataacaaaattcttagggttttgataaaactctgctatctacagcacaggattgtatacatttcaaaaataaagccctggtgttttactgaattctgggtagagaaataacatctgaccatggaacaacaaataaccatgcaggcaaaactacccat-atgagctggggactgtctgaaccatcaagttattaggttgagtggatacagagcaatcactgtaacacggcattagtacatccaggattgacca-cagcatgactagagggcagaggcaaacagtatgagcaagtagcccaggacttcatgctattcaccacttttgcatcaatatctcttcttcagaccacacttacgcctccatgagagaacacttccaac--tctaatggaggagaaaaatgtca-agcttggttcattaatgggtcagcttggtatgtgagtccaagtcaaaaaggatgaaga-taaattatagcctcgcttacggtgatcttgaaaaatagt-agtgaggaaaacgcctcccaatgggcagagtttcagatggtacccagtcattcactttgtgtggaaagagaagtagtttgaagttagaatatgtataactcataggtagtgataaatggcttaggaggcttttcaggtggctggaaagaaaaagatagaaacacttggaaaaaagaagtctggaacagaggcacatgcataaacatat--gagtgaaggtatgaagtgttacattatttgtattacatgct-aaaaccacaagatggaatccaccatagaaaatgaattaagcaactaggtagaaaatgtgacttggcgagcagttattgtcaagagcttctgacatttgccctcattatcctacctgcaatgctagtgcaatgaac-------ttatgaatgaagtcaccatgatagtagggatagaagcaacgcatgggtttaacagcatgtattatagccactggtcaaacatccagtcttccatcaataagtgtcccatgcaatg-actggataaaatagtttcccatcaaaagatcaaccagttatttaatgtcaagttgatgacactggactttttctactttga--atgtagcaa--t--tttttttggtaggaatagatacacatactccaggcatgggtttctattcctgaacataagtcctcagccagcatgactgtc-taaaggctta-------taggatgtttgacgcagcagcagaagatcccacataccattgtatcagaaaaaagggccgacttaatggcaaagaaagtgtaggagtggacttatgaccatggaatccattggccatatcacatattgcactatcataagtgatctattagagtcatggagggatctgttgaagctacacctgaaattccagctcagatgaaatgtcatccttcaagaccca----gtactttaaatcaattatctttctacggtgctgtgtcctcactaggaagaatgtatgg-tttagaaaccaaaaggtgaaagcaggtgcagcccttcttagaatccctaccagtaactcatttgagaaatttgtggtttttttctccacaattataagctctgtgagtttagaggttctagctctctaaagggaaatattcccactagggggtacaAAAGGTACACTAGGAAGTGTATActttgtttaattatgatggtaaatgaccaaaggcaatgagattaactaaaaaaagccatagtgatcaggggctcagacacttccggatcatgacaccaggtaaactactgagagcaggagaggtgctagataagggtgagagcaacatagaatgaacagtaagaaggagatggtgact------ataatttgtaggacttaagaccagccgcagtggtggtcctcttctaagtttcctccagatacagaggcccactatagccctgtaagagcttttccCAGATCTTTTt---ta-a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29692337 2118 + 173848474 taaaaaagaagcaaagtgcctggcagacctctctgtactttgtagtaagcatatttgacactatcgag-tactgtt------------ctaattcatccacta------------ggtgctgtatttgaatggccttcagggtaagaatgggctctatagcAAGTCTAAATTTC-----------------------------------------------------------------ACCATAAATGAGgtggaatttatggcaagtttatgggaagatcataacaaaattcttagggttttgataaaactctgctatctacagcacaggattgtatacatttcaaaaataaagccctggtgttttactgaattctgggtagagaaataacatctgaccatggaacaacaaataaccatgcaggcaaaactacccat-atgagctggggactgtctgaaccatcaagttattaggttgagtggatacagagcaatcactgtaacacggcattagtacatccaggattgacca-cagcatgactagagggcagaggcaaacagtatgagcaagtagcccaggacttcatgctattcaccacttttgcatcaatatctcttcttcagaccacacttacgcctccatgagagaacacttccaac--tctaatggaggagaaaaatgtca-agcttggttcattaatgggtcagcttggtatgtgagtccaagtcaaaaaggatgaaga-taaattatagcctcgcttacggtgatcttgaaaaatagt-agtgaggaaaacgcctcccaatgggcagagtttcagatggtacccagtcattcactttgtgtggaaagagaagtagtttgaagttagaatatgtataactcataggtagtgataaatggcttaggaggcttttcaggtggctggaaagaaaaagatagaaacacttggaaaaaagaagtctggaacagaggcacatgcataaacatat--gagtgaaggtatgaagtgttacattatttgtattacatgct-aaaaccacaagatggaatccaccatagaaaatgaattaagcaactaggtagaaaatgtgacttggcgagcagttattgtcaagagcttctgacatttgccctcattatcctacctgcaatgctagtgcaatgaac-------ttatgaatgaagtcaccatgatagtagggatagaagcaacgcatgggtttaacagcatgcattatagccactggtcaaacatccagtcttccatcaataagtgtcccatgcaatg-actggataaaatagtttcccatcaaaagatcaaccagttatttaatgtcaagttgatgacactggactttttctactttga--atgtagcaa--t--tttttttggtaggaatagatacacatactccaggcatgggtttctattcctgaacataagtcctcagccagcatgactgtc-taaaggctta-------taggatgtttgacgcagcagcagaagatcccacataccattgtatcagaaaaaagggccgacttaatggcaaagaaagtgtaggagtggacttatgaccatggaatccattggccatatcacatattgcactatcataagtgatctattagagtcatggagggatctgttgaagctacacctgaaattccagctcagatgaaatgtcatccttcaagaccca----gtactttaaatcaattatctttctacggtgctgtgtcctcactaggaagaatgtatgg-tttagaaaccaaaaggtgaaagcaggtgcagcccttcttagaatccctaccagtaactcatttgagaaatttgtggtttttttctccacaattataagctctgtgagtttagaggttctagctctctaaagggaaatattcccactagggggtacaAAAGGTACACTAGGAAGTGTATActttgtttaattatgatggtaaatgaccaaaggcaatgagattaactaaaaaaagccatagtgatcaggggctcagacacttccggatcatgacaccaggtaaactactgagagcaggagaggtgccagataagggtgagagcaacatagaatgaacagtaagaaggagatggtgact------ataatttgtaggacttaagaccagccgcagtggtggtcctcttctaagtttcctccagatacagaggcccactatagccctgtaagagcttttccCAGATCTTTTt---ta-a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5482925 2119 +   6154872 taaaaaagaagcaaagtgcctggcagacctctctgtactttgtagtaagcatatttgacactatcgaa-tactgtt------------ctaattcatctacta------------ggtgCTGTATTTGAATGGCCTTCAGGGTAAGAATGGGCTCTATAGCAAGTTTAAATTTC-----------------------------------------------------------------ACCATAAATGAGgtggaatttatggcaagtttatgggaagatcataacaaaattcttagggttttgataaaactctgctatctacagcacaggattgtatacatttcaaaaataaagccctggtgttttactgaattctgggtagagaaataacatctgaccatggaacaacaaataaccatgcaggcaaaactacccat-atgagctggggactgtctgaaccatcaagttattaggttgagtggatacagagcaatcactgtaacacggcattagtacatccaggattgacca-cagcatgactagagggcagaggcaaacagtatgagcaagtagcccaggacttcatgctattcaccacttttgcatcaatatctcttcttcagatcacacttacgcctccatgagagaacacttccaac--tctaacggaggagaaaaatgtca-agcttggttcattaatgggtcagcttggtatgtgagtccaagtcaaaaaggatgaaga-taaattatagcctcgcttacggtgatcttgaaaaatagt-agtgaggaaaacgcctcccaatggacagagtttcagatggtacccagtcattcactttgtgtggaaagagaagtagtttgaagttagaatatgtataactcataggtagtgataaatggcttaggaggcttttcaggtggctggaaagaaaaagatagaaacacttggaaaaaagaagtctggaacagaggcacatgcataaacatataagagtgaaggtatgaagtgttacattatttgtattacatgct-aaaaccacaggatggaatccaccatagaaaatgaattaagcaactaggtagaaaatgtgacttggtgagcagttattgtcaagagcttctgacatttgccctcattatcctacctgcaatgctagtgcaatgagc-------ttatgaatgaagtcaccatgatagtagggatagaagcaatgcatgggtttaacagcatgcattatagccactggtcaaacatccagtcttccatcaataagtgccccatgcaatg-actggataaaatagtttcccgtcaaaagatcaaccagttatttaatgtcagcttgatgacactggacttcttctactttga--atgtagcaa--t--tttttttggtaggaatagatacacatactccaggcatgggtttctattcctgaacataagtcctcagccagcatgactgtc-taaaggctta-------taggatgtttgacgcagcagcaggagatcccacataccattgtatcagaaaaaagggccgacttaatggcaaagaaagtgtaggagtggacttatgaccatggaatccattggccatatcacatattgcactatcataagtgatctattagagtcatggagggatctgttgaagctacacctgaaattccagctcagatgaaatgtcatccttcaagaccca----gtactttaaatcaattatctttctatggtgctgtgtcctcactaggaagaatgcgtgg-tttagaaaccaaaaggtgaaagcaggtgcagcccttcttagaatccctaccaataactcatttgagaaatttgtggcttttttctccacaattataagctctgtgagtttagaggttctagctctctaaagggaaatattcccacttgggggtacaAAAGGTACACTAGGAAGTGTATActttgtttaattatgatggtaaatgaccaaaggcaatgagattaactaaaaaaagccatagtgatcaggggctcagacacttccggatcatgacaccaggtaaaccactgag-gcaggagaggtgccagataagggtgagagcaacatagaatgagtagtaagaaggagatggtgact------ataatttgtaggacttaagaccagccacagtggtggtcctcttctaagtttcctccagatacagaggcccactatagccctgtaagggcttttccCAGATCTTTTt---ta-a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74389524 2110 + 122973662 taaaaaagaagcaaagtgcctagcagacctctctgtactttgtagtaagcatatttgacactatcgag-tactgtt------------ttaattcatctacta------------gttgctatatttgaatggccttcagggtaagaatgggctctatagcaagtccaAATTTC-----------------------------------------------------------------ACCATAAATGAGGTGGAATTTATGTCAAGTTtatgggaagatcataacaaaattcttagggttttgataaaactctactatctacagcacaggattgtatacatttcaaaaataaagccctggtgttttactgaattctgggtagagaaataacatctgaccatggaacaacaaataaccatacaggcaaaactacccat-atgagctggggactgtctgaaccatcaagttattacgtcgagtggatacagagcaatcattgtaacacggcattagcacatccaggattgacca-cagcatgactagagggcagaggcaaacagtatgagcaagtagcccaggccttcatgctattcaccacttttgcatcaatatctcttcttcagatcacacttatgcctgcatgagagaacacttccaac--tctaatggaggagaaaaatgtca-agcttagttcattaatgggtcagcttggtatgtgagtccaagtcaaaaaggatgaaga-taaattatagccttgcttatgatgatcttgaaaaatagt-agtgaggaaaacgcctcccaatggacagagtttcagatggtacccagtcattcactttgtgtggaaagagaagtagtttgaagttagaatatttataactcataggtagtgataaatggcttagggggcttttcacgtggctggaaagaaaa----agaaacacttgggaaa---aagtctggaacagaggcacatgcataaacatataagactgaaggtatgaagtgttacattatttgtattacatgct-aaaaccacaagatggaatccatcatagaaaatgaattaagcaactaggtagaaaatgtgacttggcgagcagttattgtcaagagcttctgacatttgccctcattatcctacctgcaatgctagtgcaatgagc-------ttatgaatgaagtcaccatgacagtagggatagaagcaatgcatgggtttaacagcatgcattataaccact-gtcaaacatccagtcttccatcaataagtgtcccatgcaatg-actggataaaatagtttcccgtcaaaagatcaaccagttacttaatgtcaagttgatgacactggactttttctactttga--atgtagcaatgt--tttttttggtaggaatagatacacatactccaggcatgggtttctattcctgaacataagtcctcagccagcatgactgtc-taaaggctta-------ttggatgtttgacgcaggagcaggagatcccacatactattgtattagaaaaaagggccgacttaatggcaaagaaagtgtaggagtggactcatgaccatgaaatccattggccatatcacatattgcactatcgtaagtgatctattagaatcatggagggatctgttgaagctgcacctgaaattccagctcagatgaaatgtcatccttcaagaccca----gtactttaaatcaattatctttctatggtgctgtgtcctcactaggaagaatgcatgg-tttagaaaccaaaaggtgaaagcaggtgcagcccttcttagaatccctaccagtaactcatttgagaaatctgtgccttttttctccacaattataagctctgtgagtttagaggttctagctctctaaagggaaatgttcccactagagggtacaAAAGGTACACTAGGAAGTGTATActttgtttaattatgatggtaaatgaccaaaggcaatgagattaactaaaaaaagccatagtgatcaggggctcagacacttctggatcatgacaccaggtaaaccactgagagcaggagaggtgccagataagggtgagagcaacatagaatgaatagtaagaaggagatggtgact------ataatttgtaggacttaagaccagacacagtggtggtcctcttctaagtttcctccagatacagaggcccactatagccctgtaacagcttttccCAGATCTTTT--------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29687992 2118 + 172585720 taaaaaagaagaaaagtgcctggcagacctcacagtactttgtagtaagcatatttgacactatagag-tactgtt------------ctaattcatctacta------------gttgCTATATTTGAATGGCCTTCAGGGTAAGAATGGCCTCTATAGCAAGTCTAAATTTC-----------------------------------------------------------------ACCATAAATGAGgtggaatttatggcaagtttatgggaagatcataacaaaattcttagggttttgataaaaccctactatctacagcacagggttgtatgcattttgagaataaagccctggtgttttaccgaattctgggtacagaaataacatctgaccatggaacatcaaataaccatgcaggcaaaactacccat-aggagctggggactgtctgaaccatcaagtcattaggtcgagtggatacagagcaatcactgtaacatagcattagtacatccaggattgaccaccagcgtgactagagggcagaggaaaatagtatgagcaagcagccgaggccttcatgctattcaccacttttgcatcaatatctcttcttcagatcacacttatgcctgcatgagagaacacttccaactgtctaatggaggagaaaaatgtca-agcttggttcattaatgggtcagcttgatatgtgagttcaagtcaaaaaggatgaaga-agaattatagcctcgcttatggtgatcttgaaaaatagt-agtgaggaaaacgcctcccaatggacagagtttcagatggtacgcagtcattcactttgtgtggaaagagaagtagtttgaagttagaatatgtataactcataggtaatgataaatgacttaggaggcttttcaggtggctggaaagaaaaagacag----acttggaaaaaagaagtcgggaacagaggcacatgcataaacatgtaagagtgaaggtatgaagtgttacattatttgtattacatgctcaaaaccacaagatggaatccaccatagaaaatgaattaaacaactaggtagaaaatgtgacttgtcaagctgttattgtcaagaccttctgtcatttgccctcattctcctacctgcaatgctggtgcaatgagc-------ttatgaatgaggtcgctatgatagtagggatagaagcaatgcatgggtttaacagcatgcattatagccact-gtcaaacatccagtcttccatcaacaagtgtcccatgcaatg-accggataaaatagtttgccgtcaaaaggtcaaccagttagttaatgtcaagttgatgacactagactttttctactttga--atgtagcaa--t-gtttttttggtagggatagatacacatactccaggcatgggttttcattcctgaacataagtcctcagccagcatgactgtc-taaaggctta-------taggatgtttgatgcagctgcaggagatcccacataccattgtgtcagaaaaaaggactgacttaatggcaaagaaagtgtaggagtggactcatgaccatggaatccattggccacatcacatattgcactaccataagtgatctattagagtcatggagggatttgttgaagctgcacctgaaataccagctcaaatgcaatgtcatccttcaagaccca----gtactttaaatcaattatctttctatggtgctgtgtcctcactaggaaaaatgcatgg-tttagaaaccaaaaggtgaaagcaggtgcagcccttcttagaatccctaccagtaactcatttgagaaatttgtgttttttgtctccacaattataagctctgtgagtttagaggttctaactctctaaagggaaatgttcccactag-aggtacaaaagGTACACTAGGAAGTGTATATTttgtttaattatgatggtaaatgaccaagggcaatgagagtaattgaaaaaagccattgtgatcgggggctcagacacctctggatcatgacatcgggtaaaccactgagagcagaaaaggtgccagataagggtgagaacaacatagaatgaatagtaagaaggagatggtgact------ataatttgtaagacttaagaccagccgcagtggtggtcctcttctaagtttcctccagatacagaggcccactatagccctgtaagagcttctccCAGATCTtttt---ta--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29350654 2117 - 170955103 taaaaaagaagcaaagtgcctggcagacctcacagtactttgtagtaagcatatttgacactatagag-tactgtt------------ctaattcatctacta------------gTTCCTATATTTGAATGGCCTTCAGGGTAAGAATGGCCTCTATAGCAAGTCTAAATTTC-----------------------------------------------------------------ACCATAAATGAGgtggaatttatggcaagtttatgggaagatcataacaaaattcttagggttttgataaaactctactatctacagcacagggttgtatgcattttgagaataaagccctggtgttttaccgaattctgggtacagaaataacatctgaccatggaacatcaaataaccatgcaggcaaaactacccat-aggagctggggactgtctgaaccatcaagtcattaggtcgagtggatacagagcaatcactgtaacatagcattagtacatccaggattgaccaccagcatgactagagggcagaggaaaatagtatgagcaagcagcccaggccttcatgctattcaccacttttgcatcaatatctcttcttcagatcacacttatgcctgcatgagagaacacttccaactgtctaatggaggagaaaaatgtca-agcttggttcattaatgggtcagcttgatatgtgagttcaagtcaaaaaggatgaaga-agaattatagcctcgcttatggtgatcttgaaaaatagt-agtgaggaaaacgcctcccaatggacagagtttcagatggtacgcagtcattcactttgtgtggaaagagaagtagtttgaagttagaatatgtataactcataggtaatgataaatgacttaggaggcttttcaggtggctggaaagaaaaagacag----acttggaaaaaagaagtcgggaacagaggcacatgcataaacatgtaagagtgaaggtatgaagtgttacattatttgtattacatgctcaaaaccacaagatggaatccaccatagaaaatgaattaaacaactaggtagaaaatgtgacttggcgagctgttattgtcaagaccttctgtcatttgccctcattctcctacctgcaatgctggtgcaatgagc-------ttatgaatgaggtcgctatgatagtagggatagaagcaatgcatgggtttaacagcatgcattatagccact-gtcaaacatccagtcttccatcaacaagtgtcccatgcaatg-accggataaaatagtttcccgtcaaaaggtcaaccagttagttaatgtcaagttgatgacactagactttttctactttga--atgtagcaa--t-gtttttttggtagggatagatacacatactccaggcatgggttttcattcctgaacataagtcctcagccagcatgactgtc-taaaggctta-------taggatgtttgatgcagctgcaggagatcccacataccattgtgtcagaaaaaaggactgacttaatggcaaagaaagtgtaggagtggactcatgaccatggaatccattggccacatcacatattgcactaccataagtgatctattagagtcatgg-gggatttgttgaagctgcacctgaaataccagctcaaatgcaatgtcatccttcaagaccca----gtactttaaatcaattatctttctatggtgctgtgtcctcactaggaaaaatgcatgg-tttagaaaccaaaaggtgaaagcaggtgcagcccttcttagaatccctaccagtaactcatttgagaaatttgtgttttttgtctccacaattataagctctgtgagtttagaggttctaactctctaaagggAAATGTTCCCACTAG-AGGTACAAAAGGTACACTAGGAAGTGTATATTttgtttaattatgatggtaaatgaccaagggcaatgagagtaattgaaaaaagccattgtgatcgggggctcagacacctctggatcatgacatcaggtaaaccactgagagcaggaaaggtgccagataagggtgagaacaacatagaatgaatagtaagaaggagatggtgact------ataatttgtaagacttaagaccagccgcagtggtggtcctcttctaagtttcctccagatacagaggcccactatagccctgtaagagcttctccCAGATCTTTTT---TA--
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      85977 2120 +    766320 taaaaaagaagcaaagtgcctggcagacctcacagtactttgtagtaagcatatttgacactatagag-tactgtt------------ctaattcatctacta------------gTTCCTATATTTGAATGGCCTTCAGGGTAAGAATGGCCTCTATAGCAAGTCTAAATTTC-----------------------------------------------------------------ACCATAAATGAGgtggaatttatggcaagtttatgggaagatcataacaaaattcctagggttttgataaaactctactatctacagcacagggttgtatgcattttgagaataaagccctggtgttttaccaaattctgggtacagaaataacatctgaccatggaacatcaaataaccatgcaggcaaaactacccat-aggagctggggactgtctgaaccatcatgtcattaggtcgagtggatacagagcaatcactgtaacatagcattagcacatccaggattgaccaccagcatgactagagggcagaggaaaatagtatgagcaagcagcccaggccttcatgctattcaccacttttgcatcaatatctcttcttcagatcacacttatgcctgcatgagagaacacttccaactgtctaatggaggagaaaaatgtca-agcttggttcattaatgggtcagcttgatatgtgagttcaagtcaaaaaggatgaaga-ggaattatagcctcgcttatggtgatcttgaaaaatagt-agtgaggaaaacgcctcccaatggacagagtttcagatggtacgcagtcattcactttgtgtggaaagagaagtagtttgaagttagaatatgtataactcataggtaatgataaatgacttaggaggcttttcaggtggctggaaagaaaaagacag----acttggaagaaagaagtccggaacagaggcacatgcataaacatgtaagagtgaaggtatgaagtgttacattatttgtattacatgctcaaaaccacaagatggaatccaccatagaaaatgaattaagcaactaggtagaaaatgtgacttggtgagctgttattgtcaagagcttctgtcatttgccctcattctcctacctgcaatgctggtgcaatgagc-------ttatgaatgaagtcgctatgatggtagggatagaagcaatgcatgggtttaacagcatgcattatagccact-gtcaaacatccagtcttccatcaacaagtgtcccatgcaatg-actggataaaatagtttcccgtcaaaaggtcaaccagttagttaatgtcaagttggtgacactagactttttctactttga--atgtagcaa--t-gtttttttggtagggatagatacacatactccaggcatgggttttcattcctgaacataagtcctcagccagcatgactgtc-taaaggctta-------taggatatttgatgcagcagcaggagatcccacataccattgtgtcagaaaaaaggactgacttaatggcaaagaaagtgtaggagtggactcatgaccatggaatccattggccacatcacatattgcgctaccataagtgatctattagagtcatggagggatctgttgaagctgcacctgaaataccagctcagatgcaatgtcatccttcaagaccca----gtactttaaatcaattatctttctatggtgctgtgtcctcacgaggaaaaatgcatgg-tttagaaaccaaagggtgaaagcaggtgcagcccttcttagaatccctaccagtaactcatttgagaaatttgtgttttttgtctccacaattataagctctgtgagttcagaggttctaactctctaaagggaaatgttcccactag-gggTACAAAAGGTACACTAGGAAGTGTATATTttgtttaattatgatggtaaatgaccaagggcaatgagagtaactgaaaaaagctattgtgatcaggggctcagacacctctggatcatgacaccaggtaaaccactgagatctggaaaggtgccagataagggtgagaacaacatagaatgaatagtaagaaggagatggtgact------ataatttgtaagacttaagaccagccgcagtggtggtcctctcctaagtttcctgcagatacagaggcccactatagccctgtaagagcttttccCAGATCTTTTT---ttaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28606821 2120 -  71996105 taaaaaagaagcaaagtgcctggcagacctcacagtactttgtagtaagcatatttgacactatagag-tactgtt------------ctaattcatctacta------------gTTCCTATA-TTGAATGGCCTTCAGGGTAAGAATGGCCTCTATAGCAAGTCTAAATTTC-----------------------------------------------------------------ACCATAAATGAGgtggaatttatggcaagtttatgggaagatcataacaaaattcttagggttttgataaaactctactatctacagcacagggttgtatgcattttgagaataaagccctggtgttttaccgaattctgggtacagaaataacatctgaccatggaacatcaaataaccatgcaggcaaaactacgcat-aggagctggggactgtctgaaccatcaagtcattaggtcgagtggatacagagcaatcactgtaacatagcattagtgcatccaagattgaccaccagcatgactagagggcagaggaaaatagtatgagcaagcagcccaggccttcatgctattcaccacttttgcatcaatatctcttcttcagatcacacttatgcctgcatgagagaacacttccaactgtctaatggaggagaaaaatgtca-agcttggttcattaatgggtcagcttgatatgtgagttcaagtcaaaaaggatgaaga-agaattatagcctcgcttatggtgatcttgaaaaatagt-agtgaggaaaacacctcccaatggacagagtttcagatggtacgcagtcattcactttgtgtgaaaagagaagtagtttgaagttagaatatgtataactcataggtaatgataaatgacttcggaggcttttcaggtggctggaaagaaaaagacag----acttggaaaaaagaagtctggaacagaggcacatgcataaacatgtaagagtgaaggtatgaagtgttacattatttgtattacatgctcaaaaccacaagatggaatccaccatagaaaatgagttaagcaactaggtagaaaatgtgactaggtgagctgttattgtcaagagcttctgtcatttgccctcattctcctacctgcaatgctggtgcaatgagc-------ttatgaatgaagtcgctatgatagtagggatagaagcaatgcatgggtttaacagcatgcattatagccact-gtcaaacatccagtcttccatcaacaagtgtcccatgcaatg-accggataaaacagtttcccttcaaaaggtcaaccagttagttaatgtcaagttgatgacactagactttttctactttga--atgtagcaa--t-gttgttttggcaggaacagatacacatactccaggcatgggttttcattcctgaacataagtcctcagccagcatgactgtc-tgaaggctta-------taggatgtttgatgcagcagcaggagatcccacataccattgtgtcagaaaaaaggactgacttaatggcaaagaaagtgtaggagtggactcatgaccatggaatccattggccacatcacatattgcactaccataagtgatctattagagtcatggagggatctgttgaagctgcacctgaaataccagctcagatgcaatgtcatccttcaagaccca----gtactttaaatcaattatctttctatggtgctgtgtcctcactaggaaaaatgcatgg-tttagaaaccaaaaggtgaaagcaggtgcagcccttcttagaatccctaccagtaactcatttgagaaatttgtgttttttgtctccacaattataagctctgtgagtttagaggttctaactctctaaagggaaatgttcccactag-gggcacaAAAGGTACACTAAGAAGTGTATATTttgtttaattatgatggtaaatgaccaagggcaatgagagtaattgaaaaaagccattgtgatcaggggctcagacacctctggatcatgacaccaggtaaaccactgagagcaggaaaggtgccagataagggtgagaacaacatagaatgaatagtaagaagaagatggtgact------ataatttgtaagacttaagaccagccgcagtggtggtcctcttctaagtttcctccagatacagaggcccactatagccctgtaagagcttctccCAGATCTTTTTAaatt--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      54882 2117 -    352859 taaaaaagaagcaaagtgcctggcagacctcacagtactttgtagtaagcatatttgacactatagag-tactgtt------------ctaattcatctacta------------gTTCCTATATTTGAATGGCCTTCAGGGTAAGAATGGCCTCTATAGCAAGTCTAAATTTC-----------------------------------------------------------------ACCATAAATGAGgtggaatttatggcaagtttatgggaagatcataacaaaattcctagggttttgataaaactctattatctacagcacagggttgtatgcattttgagaataaagccctggtgttttaccaaattctgggtacagaaataacatctgaccatggaacatcaaataaccatgcaggcaaaactacccat-aggagctggggactgtctgaaccatcaagtcattaggtcgagtggatacagagcaatcactgtaacatagcattagtacatccaggattgaccaccagcatgactagagggcagaggaaaatagtatgagcaagcagcccaggccttcatgctattcaccacttttgcatcaatatctcttcttcagatcacacttatgcctgcatgagagaacacttccaactgtctaatggaggagaaaaatgtca-agcttggttcattaatgggtcagcttggtatgtgagttcaagtcaaaaaggatgaaga-ggaattatagcctcgcttatggtgatcttgaaaaatagt-agtgagg-aaacgcctcccaatggacagagtttcagatggtacgcagtcattcactttgtgtggaaagagaagtagtttgaagttagaatatgtataactcgtaggtaatgataaatgacttaggaggcttttcaggtggctggaaagaaaaagacag----acttggaagaaagaagtctggaacagaggcacatgcataaacatgtaagagtgaaggtatgaagtgttacattatttgtattacatgctcaaaaccacaagatggaatccaccatagaaaatgaattaagcaactaggtagaaaatgtgacttggtgagctgttattgtcaagagcttctgtcatttgccctcattctcctacctgcaatgctggtgcaatgagc-------ttatgaatgaagtcgctatgatagtagggatagaagcaatgcatgggtttaacagcatgcgttatagccact-gtcaaacatccagtcttccatcaacaagtgtcccatgcaatg-accggataaaatagtttcccgtcaaaaggtcaaccagttagttaatgtcaagttgatgacactagactttttctactttga--atgtagcaa--t-gtttttttggtagggatagatacacatactccaggcatgggttttcattcctgaacataagtcctcagccagcatgactgtc-taaaggctta-------taggatatttgatgcagcagcaggagatcccacataccattgtgtcagaaaaaaggactgacttaatggcaaagaaagtgtaggagtggactcatgaccatggaatccattggccacatcacatattgcgctaccataagtgatctattagagtcatggagggatctgttgaagctgcacctgaaataccagctcagatgcaatgtcatccttcaagaccca----gtactttaaatcaattatctttctatggtgctgtgtcctcacgaggaaaaatgcatgg-tttagaaaccaaaaggtgaaagcaggtgcagcccttcttagaatccctaccagtaactcatctgagaaatttgtgttttttgtctccacaattataagctctgtgagttcagaggttctaactctctaaagggaaatgttcccactag-gggTACAAAAGGTACACTAGGAAGTGTATATTttgtttaattatgatggtaaatgaccaagggcaatgagagtaactgaaaaaagctattgtgatcaggggctcagacacctctggatcatgacaccaggtaagccactgagatctggaaaggtgccagataagggtgagaacaacatagaatgaatagtaagaaggagatggtgact------ataatttgtaagacttaagaccagctgcagtggtggtcctcttctaagtttcctgcagatacagaggcccactatagccctgtaagagcttttccCAGATCTTTTT---tt--
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2213788 2126 -   3067355 taaaaaagaagcaaagtgcctggcagacctcacagtactttgtagtaagcatatttgacactatagag-tactgttcatctactagtactaatttatctacta------------gttcctatatttgaatggccttcagggtaagaatgggctctatagcAAGTCTAAATTTC-----------------------------------------------------------------ACCATAAATGAGgtgaaatttatggcaagtttataggaagatcgtaacaaaattcttagggttttgataaaactctactatctacagcacagggttgtatgcattttgagaataaagccctgg---tttaccgaattctgggtacagaaataacatctgaccatggaacatcaaataaccatgcaggcaaaactacccat-atgagctggggactgtctgaaccatcaagtcattaggtcgagtggatacagagcaatcactgtaacatggcattagtacatccaggactcaccaccagcatgactagagggcagaggaaaatagtatgagcaagcagcccaggccttcatgctattcaccactttggcatcaatatctcttcttcagatcacacttatacctgcatgagagaacatttccaactgtctaatggaggagaaaaatgtca-agcttggttcattaatgggtcagctcggtatgtgaatccaagtcaaagaggatgaa----gaattatagcctcgcttatggtgatcttgaaaaatagt-agtgaggaaaacgcctcccagtggacagagtttcagatggtgcccagtcattcactttgtgtggaaagagaagtagtttgaagttagaatatgtataactcataggtaatgataaatgacttaggaggcttttcaggtggctggaaagaaaaagatag----acttggaaaaaagaagtctggaacagaggcacatgcataaacatgtaagagtgaaggtatgaagtgttacattatttgtattacatgctaaaaaccacaagatggaatccaccatagaaaatgaattaagcaactaggtagaaaatgtgacttggtgagctgttattgtcaagagcttctgtcatttgccctcgttctcctacctgcaatgctggtgcgatgaac-------ttatgaatgaagtcaccatgatagtagggatagaagcaatgcatgggtttaccagcatgcattatagccact-gtcaaacatccagtcttccatcaacaagtgtcccatgcaatg-atcggataaaatagtttcccgtcaaaaggtcaaccagttagttaatgtcaagttgatgacactagactttttctactttgaatatatagcaa--t-gtttttttggtaggaatagatacacatactccaggcatgggtttttattcctgaacttaagtcgtcagccagcatgactgtc-tgaaggctta-------taggatgtttgatgcagcagcaggagatcccacataccattgtgtcagaaaaaagggctgacttaatggcaaagaaagtgtaggagtgggctcatgaccatggaatccattggccacatcacatattgcgctactgtaagtgatctattagagtcatggagggatctgttgaagctgcacctgaaataccagctcagatgcaatgtcatccttcaagaccca----gtactttaaatcaattatctttctatggtgctgtgtcctcactaggaaaaatgcatgg-tttagaaaccaaaaggtgaaagcaggtgcagcccttcttagaatccctaccggtaactcatttgagaaatttgtgttttttgtctccacaattataagctctgtgagtttagaggttctgactctctaaagggaaatgttcccactag-gggTACAAAAGGTACACTAGGAAGTGTATATTttgtttaattatgatggtaaatgaccaagggcaatgagagtaactgaaaaaagccattgtgatcagaggctcagacacctctggatcatgacaccaggtaaaccactgagagaaggaaaggtgccagataagggtgagaacaacatagaatgaatagtgagaaggagatggtgact------ataatttgtaagacttaagaccagccacagtggtggtcctcttctaagtttcgtctagatacagaggaccactatagccctgtaagagctTTCCCCAGATCTTTTT---tt--
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1681131 2108 -   2232465 tcaataaggaaa-----gccttgtaggtctctctgtgttttgtagtaagc-catttaacaccatggggatactgtg----------------tccatctgctatggacatacatggctacagtcattgaataggc-ccagggtgagaa-gggctctagaacacgtctaagctacagtgcaagtcatcctgatacttggggcatacaatttgtaagactttatagtatagaggtacaaataacaagaatgaggtagagtttatagcaaatttatgggaaaataataataaaagtcttagggttttggagcaaacctgctatctacag---aagatcatacaccttttgaaaaataggctctggtgtgctacttaactctgggttgagacacaacacctgactatgg-acatcaaataaccaagaagcctaaatcatccatcatgag-----------ctgacccaccaagtcattaggtcaggtggatac--agcactcattgaaacatgctattggtacattcaggatcaagtagaggcatgcccagaaggccgaagcaaactgtatgagcaagtagctaagaacttcctgctcttaaacactattgcttcaatgtttctgcctcagatcacatcaatgtctacatgggagaaaacatctaaccatctaatgggggaggaaaaaggcagagtttggtacgtcactggctta-----------ggggacaagttaaaaaggatatagactgaattatagcc----------------taaaagacagtgggtgagggaaactctgcccagtggatagcgttttagagggtacctagtcatccactatgtgtggaaag---agtagtctgaagttaggat-tgtataactcatgggc-----taaatggcttgggaggcttttcgggtggctggaaggaaaaggatagaaagacttggaaaa-agaagtctagaacagtggcacatacatagacatatg-------------ggagtgtttcattattcctactacatgttaacaactataagatagaatcaaccacagaagagggattaaataaccaggtagaagatgtgacttggtgggcagttatggtcaaa--catctgtcatttgcttgcaccccactctctacaatgctggtataatgggcatactatgtatgaatgcagtagccatg-tggtaggaatggaagaaatgcatgggctaagcagcatgcactatagccact-gctaaatatccaatgtgccatcaacaagagactaatgtggggtccctgataaaacagtaccccttcaaaagaccaaccagatacttagattcaagtcgacatcattggaatccttccattttgg--atgtagcaa--taattattttggtaggtatagagaggcatactccaggtatgggttttcttccctagctgtaagtcctcagtcaacacaactatcttaaagacttagagtctttagagtgtttgattcagtatcaggagatcccaaataacattgtgtcaggctata----ccacctaatagcataggaagtataggcatggacatatgatcatgaaatctgttggtcacatcacatactgc------atcaatgacctattagaagtgtaaagtgacctgttgaatacatagctgaaatgccatctcacatgcaattttatcctctaagacccattatgtactttaaaacaattacccttatatggtgctgtgtcttcactaggaaaaatacatggattcagtaaccaagggatgtaaacaagggtggttcat-ttatcatcatgac--------catttgaataatatgtgtttcttgtgtccataattataagctctgtaagtttagaggttctagtttccaaaagggaaatgcttctaccag-agatacaGAATGTACA-------------AATttgtctaattatgatggtaaatgaccaagtgctatgagcttggcctaagaatggcatagttatctggggctcagacacctctggattgtgtcatcaggtaaaatactgagacaagtggaggtgctagctgagggtgagggcaatacagaatgaatag-aagaaagtgatggttaatatacacataatttgta-gacctgagaccagctgcaatgacggttCTCTTCTATGCTTTCCCCACATACAAGGGCCCACTAGAGCCATGTAGAAACTTCTTTTATAA-------------
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570037           356476 8405 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I

a score=803909.000000
s hg38.chr6_GL000254v2_alt   477599 177 +   4827813 tcaattaattaattaatttttttatactttaagttctagggtacatgtgcacaacgtgcaggtttgttacatgtgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatatctcctaatgctatccctgccccct-cccccaccccacaccagat
s panTro5.chr6             29458681 177 + 175400573 ttaattaattaattaatttttttatactttaagttctagggtacatgtgcacaacgtgcaggtttgttacatgtgtatacatgtgccatgttggtgtgctgcacccattaacttgtcatttacattaggtatatctcctaatgctatccctgccccct-cccccaccccacaccagat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29694455 177 + 173848474 ttaattaattaattaatttttttatactttaagttctagggtacatgtgcacaacgtgcaggtttgttacatgtgtatacatgtgccatgttggtgtgctgcacccattaacttgtcatttacattaggtatatctcctaatgctatccctgccccct-cccccaccccacaccagat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5485044 177 +   6154872 ttaattaattaattaatttttttatactttaagttctagggtacatgtgcacaacgtgcaggtttgttacatgtgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatatctcctaatgctatccctgccccct-cccccaccccacaccagat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74391634 174 + 122973662 ----TTAATTAATTAAtttttttatactttaagttctagggtacatgtgcacaacgtgctggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatatctcctaatgctatccctgccccctccccccaccccacaccagat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29690110 171 + 172585720 ------aattaattaattaattaatacttcaagtgctaaggtacatgtgcacaacatgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatgtctcctaatgttatccctccctgtc-cctccaccccaCACCAGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29352771 175 - 170955103 --aattaattaattaattaattaatactttaagtgctaaggtacatgtgcacaacatgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatgtctcctaatgttatccctccctgtc-cctccaccccacaccagat
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      88097 177 +    766320 ttaattaattaattaattaattaatactttaagtgctaaggtacatgtgcacaacatgcagatttgttacatatgtgtatatgtgccatgttggtgtgctgcactcattaactcgtcatttacattaggtatgtctcctaatgttatccctccccctc-ctcccaccccacaccagat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28608941 175 -  71996105 --aattaattaattaattaattaatactttaagtgctaaggtacatgtgcacaacatgcaggtttgttacatatggatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatgtctcctaatgttatccctccccctc-cccccaccccacaccagat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      56999 175 -    352859 --aattaattaattaattaattaatactttaagtgctaaggtacatgtgcacaacatgcaggtttgttacatatgtgtatatgtgccatgttggtgtgctgcactcattaactcgtcatttacattaggtatgtctcctaatgttatccctccccctc-ctcccaccccacaccagat
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2215914 171 -   3067355 ------aattaattaattaattaatactttaagtactaaggtacatgtgcacaacatgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatgtctcctaatgttatccctccccctc-cccccaccccacaccagat
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037           356476 8405 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e otoGar3.GL873742          1683239   0 -   2232465 C

a score=2292637.000000
s hg38.chr6_GL000254v2_alt   477776 439 +   4827813 cTTATACAAAGGAGTAGATCT--GAAATTAAAGGAATAGACAgtgttggaagttataatgctttactcagataacactttcagaatgaaggcattattacttcagctgctagatgtgctacaggtagatag----agctcagctgaga-tccttctttctgggttgcctcagctaaacagagttgcttcatctaaacatatggcccttttccatgtaatctgcattcaacactgaccaacaaggagatttaaggcttgccgttggcctcagctcagaacatcaa----tgaattgtcatctcatattgagaacttcctacagggttcagtgaaact-----------------------------ttagt--agtttgcattacaaacttccaaagtaggtagtttgcattacttcctttcctcaatcatgctacccaccctttcctttgaaagatgttgatccaaaaaatgttccctagt
s panTro5.chr6             29458858 439 + 175400573 cTTATACAAAGGAGTAGATCT--GAAATTAAAGGAATAGACAgtgttggaagttataatgctttactcagataccactttcagaatgaaggcattattacttcagctgctagatgtgctacaggtagatag----agctcagctgaga-tccttctttctgggttgcctcagctaaacagagttgcttcatctaaatatatggcccttttccatgtaatctgcattcaacactgatcaacaaggagatttaaggcttgcctttggcctcagctcagaacatcaa----tgaattgtcatctcatattgagaacttcctacagggttcagtgaaact-----------------------------ttagt--agtttgcattacaaacttccaaagtaggtagtttgcattacttcctttcctcaatcatactacccaccctttcctttgaaagatgttgatccaaaaaatgttccctagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29694632 439 + 173848474 cTTATACAAAGGAGTAGATCT--GAAATTAAAGGAATAGACAgtgttggaagttataatgctttactcagataccactttcagaatgaaggcattattacttcagctgctagatgtgctacaggtagatag----agctcagctgaga-tccttctttctgggttgcctcagctaaacagagttgcttcatctaaatatatggcccttttccatgtaatctgcattcaacactgatcaacaaggagatttaaggcttgcctttggcctcagctcagaacatcaa----tgaattgtcatctcatattgagaacttcctacagggttcagtgaaact-----------------------------ttagt--agtttgcattacaaacttccaaagtaggtagtttgcattatttcctttcctcaatcatactacccaccctttcctttgaaagatgttgatccaaaaaatgttccctagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5485221 438 +   6154872 cTTATACAAAGGAGTAGATCT--GAAATTAAAGGAATAGACAgtgttggaagttat-atgctttactcagataccactttcagaatgaaggcattattacttcagctgctagatgtgctacaggtagatag----agcttagctgaga-tccttctttctgggttgcctcagctaaacagagttgcttcatctaaatatatggcccttttccatgtaatctgcattcaacactgatcaacaaggagatttaaggcttgcctttggcctcagctcagaacatcaa----tgaattgtcatctcatattgagaacttcctacagggttcagtgaaact-----------------------------ttagt--agtttgcattacaaacttccaaagtaggtagtttgcattacttcctttcctcaatcatgctacccaccctttcctttgaaagatgttgatccaaaaaatgttccctagt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74391808 438 + 122973662 cTTACACAAAGCAGTAGATCT--GAAATTAAAGGAATAGACAgtgttggaagttataatgcattactcagataccactttcagaatgaaggcattattacttcagctgctagatgtgctacaggtagatag----agctcagctgaga-tccttctttccgggttgcctcagctaaacagagttgcttcatctaaatatatggcccttttccatgtgatctacattcaacactgatcaacaaggagatttaaggcttgccttaggcctcagctcagaacatcaa----tgaattgtcatctcatattgagaacttcctacagggttcagtgaaact-----------------------------ttggt--agtttgcattacaaacttccaaagtaggtagtttgcattacttgctttcctcaatcatgctacccaccctttcctttgaaagatgttgatcc-aaaaacatgccctagt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29690281 468 + 172585720 CTTATACAAAGGAGTAGATCTGAGAAATTAAAGGAATAGATAgtgttggaagttacaatgcactactcagataccactttcagaatgaaggcattattacttcagctgctagatgtgctacaggtagatag----ggctcagctgaaa-tccttctttctgggttgcctcagctaaacagagttgcttcatctaaatatatggcccttttccatgtaatctgccttcaatcctgatcaacaaggagatttaaggcttgcctttggcctcagctcagaacatcaa----taaattgtcatctcatattgagaacttcctacagggttcagtgaaact--ggtagtttgcattacaaacttccaaagtaggt--agtttgcattacaaacttccaaagtaggtagtttgcattacttcctttcctcaatcatatttcccaccctttcttttgaaagatgttgatccaaaaaacgttccctaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29352946 468 - 170955103 cTTATACAAAGGAGTAGATCTGAGAAATTAAAGGAATAGATAgtgttggaagttacaatgcactactcagataccactttcagaatgaaggcattattacttcagctgctagatgtgctacaggtagatag----ggctcagctgaaa-tccttctttctgggttgcctcagctaaacagagttgcttcatctaaatatatggcccttttccatgtaatctgccttcaatcctgatcaacaaggagatttaaggcttgcctttggcctcagctcagaacatcaa----taaattgtcatctcatattgagaacttcctacagggtTCAGTGAAACT--GGTAGTTTGCATTACAAACTTCCAAAGTAGGT--AGTTTGCATTACAAACTTCCAAAGTAGGTAGTTTGCATTActtcctttcctcaatcatgtttcccaccctttcttttgaaagatgttgatccaaaaaacgttccctaat
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      88274 441 +    766320 cttgTACAAAGGAGTAGATCTGAGAAATTAAAGGAATAGACAgtgttggaagttacaatgcactactcagataccactttcagaatgaaggcattattacttcagctgctagatgtgctacaggtagatag----ggctcagctgaaa-tccttctttctgggttgcctcagctaaacagagttgcttcatctaaatgtatggcccttttccatgtaatctgccttcaatcctgatcaacaaggaggtttaaggcttgcctttggcctcagctcagaacatcaa----tgaattgtcatctcatattgagaacttcctacagggttcagtgaaact-----------------------------ttggt--agtttgcattacaaactttcaaagtaggtagtttgcattacttcctttcctcaatcatgtttcccaccctttcttttgaaagatgttgatccaaaaaacgttccctaat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28609116 441 -  71996105 cTTATAAAAAGGAGTAAATCTGAGAAATTAAAGGAAGAGACAgtgttggaagttacaatgcactactcagataccactttcagaatgaaggcattattacttcagctgctagatgtgctacaggtagatag----ggctcagctgagg-tccttctttctgggttgcctcagctaaacagagttgcttcatctaaatgtatggcccttttccatgtaatctgccttcaatcctgatcaacaaggagatttaaggcttgcctttggcctcagctcagaacatcaa----tgaattgtcatctcatattgagaacttcctacagggttcagtgaaacc-----------------------------ttggt--agtttgcattacaaacttccaaagtaggtagtttgcattacttcctttcctcaatcatgtttcccaccctttcttttgaaagatgttgatccaaaaaacgttccctaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      57174 441 -    352859 cTTATACAAAGGAGTAGATCTGAGAAATTAAAGGAATAAACAgtgttggaagttacaatgcactactcagataccactttcagaatgaaggcatcattacttcaactgctagatgtgctacaggtagatag----ggctcagctgaaa-tccttctttctgggttgcctcagctaaacagagttgcttcatctaaatgtatggcccttttccatgtaatctgccttcaatcctgatcaacaaggagatttaaggcttgcctttggcctcagctcagaacatcaa----tgaattgtcatctcatattgagaacttcctacagggttcagtgaaact-----------------------------ttggt--agtttgcattacaaacttccaaagtaggtagtttgcattacttcctttcctcaatcatgtttcccaccctttcttttgaaagatgttgatccaaaaaacgttccctaat
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2216085 470 -   3067355 cTTATACAAAGGAGTAGATCTGAGAAATTAAAGGAATAGACAgtgttggaagttacaatgcactactcagataccactttcagaatgaaggcattattacttcagctgctagatgtgctacaggtagatag----ggctcagctgaga-tccttctttctgggttgcctcagctaaacagagttgcttcatctaaatgtatggcccttttccatgtaatctgtcttcaatcctgatcaacaaggagatttaaggcttgcctttggcctcagctcagaacatcaa----tgaattgtcatctcatattgagaacttcctacagggttcagtgaaactttgctagtttgcattacaaactaccaaagtaggt--agtttgcattacaaacttccaaagtaggtagtttgcgttacttcctttcctcgatcatgtttcccaccctttcttttgaaagatgttgatccaaaaaacgttccctaat
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1683239 411 -   2232465 CTTAAATAACACAGTGGATCTGAGAAGTTAAAGA-------Agtgtttgaagttataatgctctgcttagataccactt------taaaggc---attacctcagctgcttgatgtgctactgacagacagcagtagtgcagctgagatttcttctttttggattct-----ctaaagagagttgccttactaaaacacacag-acttttctatgtagtctgcattcaacattgatcaacaaggagatttcaggcttgccctgttgcctaacacagaacatacatatttgaactgccatcccatattgaaggttttctgtagggttgggt-aaact-----------------------------ttggtagagttcgtatcacaact--------caggtttttt----------ctcatctcaatcctacttcctttcctttcttttcaaaaatgttgttctaaaaaatactccctagt
i otoGar3.GL873742         C 0 N 0
e dasNov3.JH570037           356476 8405 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I

a score=250430.000000
s hg38.chr6_GL000254v2_alt   478215 52 +   4827813 aaactttctaaatgctgatctccatccctgagtcggcttcctgggaaactcC
s panTro5.chr6             29459297 52 + 175400573 aaactttctaaatgctaatctccatccctgagtcggcttcctgggaaactcC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29695071 52 + 173848474 aaactttctaaatgctaatctccatccctgagtcggcttcctgggaaactcC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5485659 52 +   6154872 aaactttctaaatgctaatctccatccctgagtcggcttcctgggaaactcC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74392246 52 + 122973662 aaactttctaaatgctaatctccatccctgagtcagcttcctgggaaattcC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29690749 52 + 172585720 aaacgttctgaatgctaatctccatccctgagtctgcttcctgagaaactcC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29353414 52 - 170955103 aaacgttctgaatgctaatctccatccctgagtctgcttcctgagaaactcC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      88715 52 +    766320 aaaccttctgaatgctaatctccatccctgagtctgcttcctgggaaactcC
i cerAty1.NW_012002711v1   C 0 I 3791
s chlSab2.chr17            28609557 52 -  71996105 aaaccttctgaatgctaatctccatccctgagtctgcttcctgggaaactcC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      57615 52 -    352859 aaaccttctgaatgctaatctccatccctgagtctgcttcctgggaaactcC
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2216555 52 -   3067355 aaaccttctgaatgctaatctccatccctgagtctgcttcctgggaaactcC
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037           356476 8405 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I

a score=8190.000000
s hg38.chr6_GL000254v2_alt   478267 2 +   4827813 AT
s panTro5.chr6             29459349 2 + 175400573 AT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29695123 2 + 173848474 AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5485711 2 +   6154872 AT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74392298 2 + 122973662 AT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29690801 2 + 172585720 AT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29353466 2 - 170955103 AT
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            28609609 2 -  71996105 AT
i chlSab2.chr17            C 0 I 3842
s manLeu1.NW_012099655v1      57667 2 -    352859 AT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2216607 2 -   3067355 AT
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037           356476 8405 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e cerAty1.NW_012002711v1      88767 3791 +    766320 I

a score=2548.000000
s hg38.chr6_GL000254v2_alt   478269 1 +   4827813 T
s panTro5.chr6             29459351 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29695125 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5485713 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74392300 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29690803 1 + 172585720 T
i rheMac8.chr4             C 0 I 3798
s manLeu1.NW_012099655v1      57669 1 -    352859 T
i manLeu1.NW_012099655v1   C 0 I 3829
s colAng1.NW_012115566v1    2216609 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 I 3778
e dasNov3.JH570037           356476 8405 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e chlSab2.chr17            28609611 3842 -  71996105 I
e cerAty1.NW_012002711v1      88767 3791 +    766320 I
e macFas5.chr4             29353468 0 - 170955103 C

a score=20829.000000
s hg38.chr6_GL000254v2_alt   478270 34 +   4827813 CTCA--------------------------------TCTCTCTCTCtatatatatatctatatata
s panTro5.chr6             29459352 34 + 175400573 CTCA--------------------------------TCTCTCTCTCtatatatatatctatatata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29695126 34 + 173848474 CTCA--------------------------------TCTCTCTCTCtatatatatatctatatata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5485714 34 +   6154872 CTCA--------------------------------TCTCTCTCTCTCtatatatatctatatata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74392301 65 + 122973662 CTCATCTAtctctctctctctctctctctctttctctctctctctctctctctctctctatatat-
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29353468 22 - 170955103 --------------------------------------------TTtatatatatatatatattta
i macFas5.chr4             C 0 I 3767
e dasNov3.JH570037           356476 8405 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e colAng1.NW_012115566v1    2216610 3778 -   3067355 I
e manLeu1.NW_012099655v1      57670 3829 -    352859 I
e chlSab2.chr17            28609611 3842 -  71996105 I
e cerAty1.NW_012002711v1      88767 3791 +    766320 I
e rheMac8.chr4             29690804 3798 + 172585720 I

a score=54509.000000
s hg38.chr6_GL000254v2_alt   478304 72 +   4827813 aaatatatacattatatatgtaatatataaaatacatgtataatatataatacatatgtattatatgtataC
s panTro5.chr6             29459386 72 + 175400573 aaatatatacattatatatgtaatatataaaatacacgtataatatataatacatatgtattatatgtataC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29695160 72 + 173848474 aaatatatacattatatatgtaatatataaaatacacgtataatatataatacatatgtattatatgtataC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5485748 72 +   6154872 aaatatatacattatatatgtaatatataaaatacatgtataatatataatacatatgtattatatgtataC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74392366 65 + 122973662 --atatatata-tatacatataatattcattata----tataatatataatacatatgtattatatgtataC
i nomLeu3.chr1a            C 0 C 0
e dasNov3.JH570037           356476 8405 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I
e colAng1.NW_012115566v1    2216610 3778 -   3067355 I
e manLeu1.NW_012099655v1      57670 3829 -    352859 I
e chlSab2.chr17            28609611 3842 -  71996105 I
e cerAty1.NW_012002711v1      88767 3791 +    766320 I
e macFas5.chr4             29353490 3767 - 170955103 I
e rheMac8.chr4             29690804 3798 + 172585720 I

a score=11916.000000
s hg38.chr6_GL000254v2_alt   478376 3 +   4827813 agg
s panTro5.chr6             29459458 3 + 175400573 AGg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29695232 3 + 173848474 AGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5485820 3 +   6154872 AGg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74392431 3 + 122973662 AGg
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29357257 3 - 170955103 agg
i macFas5.chr4             I 3767 C 0
s cerAty1.NW_012002711v1      92558 3 +    766320 agg
i cerAty1.NW_012002711v1   I 3791 C 0
s chlSab2.chr17            28613453 3 -  71996105 agg
i chlSab2.chr17            I 3842 C 0
s manLeu1.NW_012099655v1      61499 3 -    352859 agg
i manLeu1.NW_012099655v1   I 3829 C 0
s dasNov3.JH570037           364881 3 -    859332 aga
i dasNov3.JH570037         I 8405 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e colAng1.NW_012115566v1    2216610 3778 -   3067355 I
e rheMac8.chr4             29690804 3798 + 172585720 I

a score=25260.000000
s hg38.chr6_GL000254v2_alt   478379 6 +   4827813 gaacaa
s panTro5.chr6             29459461 6 + 175400573 gaacag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29695235 6 + 173848474 GAACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5485823 6 +   6154872 gaacag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74392434 6 + 122973662 gaacag
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29357260 6 - 170955103 aaacag
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      92561 6 +    766320 aaacag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28613456 6 -  71996105 gaacag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      61502 6 -    352859 aaacag
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2220388 6 -   3067355 gaacag
i colAng1.NW_012115566v1   I 3778 C 0
s dasNov3.JH570037           364884 6 -    859332 taacag
i dasNov3.JH570037         C 0 C 0
e canFam3.chr35            26138974 64429 +  26524999 I
e rheMac8.chr4             29690804 3798 + 172585720 I

a score=8246445.000000
s hg38.chr6_GL000254v2_alt   478385 1649 +   4827813 gaagagtgaaacatttaagaaagaaagttaatttagggatgcattagccaggttgtgtgt----aatgagagctcagttctctaaaggccttctgaaaagcacacaggatgtttttgcctgaagggagagctgctggaccatttattcctagttaaaattcttcattgttggaggatttcccctagggtcattaagcattttgta---cttctaggcagcacttgtctatatgccaaatgggctcccatggtgtcagacaag--ccttggggccaagggaagccctatacagcatacttgaggtaggtcactgtcagtatgtgtgagat-aatctgagttcacacacaactgtcccttgcagctctgctgaaattagagctgggctgaagagatgtgatacactggtactagaggcatctactTTAGAAGGTGAGATAGAAATGCTGTATTTTACAtttacaaccataggaatggaggtgtgctggcttttaccatgaactcccccagatagtgt----tctgaaaagcagaggaggccaactaaaataaaat---ca-cagggaaaactatatttgcaggaagaagATAATCTCAAGAGAAGCAGAGATTAA-GAGTATTCTTGAATTTTGCATAGTAAAAACCATCTAGTCTAAGACTGTctcccctaaccaaggaccttttacaaatagttgatccagggggaaaaaaaaaaagcatctacttcaatgattagtaatttaaaaggaacTGGAAGAGATAAGACATATGGATGCATACAT----ATATAAAAATAGCTAGATAGAGACCTGCAGGTGATAATATACAAGAAAGAAAATGGGGAAAGGAAAAGCAATCTGAATAGACAAAAAACG-AAACCAGTAGTTAGTGGTTATGAAGTGGATGAAAACCGAAGGGTGGGGTAAGAGGCAGGTTGATTCTGAACATGGAAAAATCTACAAGACTGAGATTCTTTAAAACATCAAACTACTCTTCTACTTTAATATAATATCAAACTCAAATTCACAACCAAAGTGGTAACATTTCATCACTAATTTGAAAAATTCTAAATAAAATAAAGGAAAAATAACACAC-AC---------ACAAAACAGAGA--ATATATAGATTTTCTAGAATGCACAGCATAGTAAAGACAAACATGAGTAAAATTATGGTGAAATTTAAGCCATGAGGGTCAGTGCATCTTAATGCCCTGTGACATTGTACTTGAGGGTTTACCAGTAGATTAATACCCTTTAAGCATGAGAATTACTGATTGAGAGAACTTCAAATGAATTTGCTTCTAGTGTGTTGATAAAGTTAAATGTGATTTATCATAGGTGGGTAAGAATATGGTTGGTAGATAGGAGACAACAGGGCTAGGATATTCAGAAAATAACCTCCAGCAAGCTTTGTAAAAGCAAAAGCATATATTGATGTAAAA-ACTTTACATATGTAATTGCATGATATACCATCATGTTGCTCAAACTGCATTAAAGTGTGATTGAGAATTCACCAC---AATGTATGTTGATGTAAT----AGTAAATATCAGATTATGTCATAATTTTTCTTAGAATTATGGCTTGAGTGATCTATTTGACACAGT-TATTATTGTTAATG--ATTTTAAATATTTTCATCTAA--TTTCAAGCTTTTGG-TTTTCTTTAATGTACTT----TATCATTCTT
s panTro5.chr6             29459467 1656 + 175400573 gaagagtgaaacatttaagaaagaaagttaatttagggatgcattagccaggttgtgtgt----aatgagagctcagttctctaaaggccttctgaaaagcacacaggatgtttttgcctgaagggagagctgctggaccatttattcctagttaaaattcttcattgttggaggatttcccctagggtcattaagcattttgta---cttctaggcagcacttgtctatatgccaaatgggctcccatggtgtcagacaag--ccttggggccaagggaagccctatacagcatacttgaggtaggtcactgtcagtatgtgtgagat-aatctgagttcacacacaactgtcccttgcagctctgctgaaattagagctgggctgaggagatgtgatacactggtactagaggcatctactTTAGAAGGTGAGATAGAAATGCTGTATTTTACAtttacaaccataggaatggaggtgtactggcttttaccatgaactcccccagatagtgt----tctgaaaagcagaggaggccaactaaaataaaat---ca-cagggaaaactatatttgcaggaagAGGATAATCTCAAGAGAAGCAGAGATTAA-GAGTATTCTTGAATTTTGCATAGTAAAAACCATCTAGTCTAAGACTctctcccctaaccaaggaccttttacaaatagttgatccagggg--aaaaaaaaaagcatctccttcaatgattagtaatttaaaaggaacTGGAAGAGATAAGACATATGGATGGATACAT----ATATAAAACTAGCTAGGTAGAGACCTGCAGGTGATAATATACAAGAAAGAAAATGGGGAAAGGAAAAGCAATCTGAATAGACAAAAAACG-AAACCAGTAGTTAGTGGTTATGAAGTGGATGAAAATCGAAGGATGGGATAAGAGGCAGATTGATTCTGAACATGGAAAAATCTACAAGACTGAGATTCTTTAAAACATCAAACTACTCTTCTACTTTAATATAATATCAAACTCAAATTCACAACCAAATTGGTAACATTTCATCACTAATTTGAAAAATTCTaaataaaataaagtaaaaataacacac-acacaaaacagacaaaacaGAGA--ATATATAGATTTTCTAGAATGCACAGCATAGTAAAGACAAGCATGAGTAAAATTATGGTGAAATTTAAGCCATGAGGGTCAGTGCATCTTAATGCCCTGTGACATTGTACTTGAGGGTTTACCTGTAGATTAATACCCTTTAAGCATGAGAACTACTGATTGAGAGAACTTCAAATGAATTTGCTTCTAGTGTGTTGATAAAGTTAAATGTGATTTATCATAGGTGGGTAAGAATATGGTTGGTAGATAGGAGACAACAGGGCTAGGATATTCGGAAAATAACCTCCAGCAAGCTTTGTAAAAGCAAAAGCATATATTGATGTAAAA-ACTTTACATATGTAATTGCATGATATACCATCATGTTGCTCAAACTGCATTAAAGTGTGATTAAGAATTCACCAC---AATGTATGTTGATGTAGT----AGTAAATATCAGATTATGTCATAATTTTTCTTAGAATTATGGCTTGAGTGATCTATTTGACACAGT-TATTATTGTTAATG--ATTTTAAATATTTTCATCTAA--TTTCAAGCTTTTGG-TTTTCTTTAATGTACTT----TATCATTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29695241 1655 + 173848474 GAAGAGTTAAACATTTAAGAAAGAAAGTTAATTTAGGGATGCATTAGCCAGgttgtgtgt----aatgagagctcagttctctaaaggccttctgaaaagcacacaggatgtttttgcctgaagggagagctgctggaccatttattcctagttaaaattcttcattgttggaggatttcccctagggtcattaagcattttgta---cttctaggcagcacttgtctatatgccaaatgggctcccatggtgtcagacaag--ccttggggccaagggaagccctatacagcatacttgaggtaggtcactgtcagtatgtgtgagat-aatctgagttcacacacaactgtcccttgcagctctgctgaaattagagctgggctgaggagatgtgatacactggtactagaggcatctactTTAGAAGGTGAGATAGAAATGCTGTATTTTACAtttacaaccataggaatggaggtgtactggcttttaccatgaactcccccagatagtgt----tctgaaaagcagaggaggccaactaaaataaaat---ca-cagggaaaactatatttgcaggaagAGGATAATCTCAAGAGAAGCAGAGATTAA-GAGTATTCTTGAATTTTGCATAGTAAAAACCATCTAGTCTAAGACTCTCTCCCCTAACCAAGGACCTTTTACAAATAGTTGATCCAGGGG---AAAAAAAAAGCATCTCCTTCAATGATTAGTAATTTAAAAGGAACTGGAAGAGATAAGACATATGGATGGATACAT----ATATAAAACTAGCTAGGTAGAGACCTGCAGGTGATAATATACAAGAAAGAAAATGGGGAAAGGAAAAGCAATCTGAATAGACAAAAAACG-AAACCAGTAGTTAGTGGTTGTGAAGTGGATGAAAATCGAAGGATGGGATAAGAGGCAGATTGATTCTGAACATGGAAAAATCTACAAGACTGAGATTCTTTAAAACATCAAACTACTCTTCTACTTTAATATAATATCAAACTCAAATTCACAACCAAATTGGTAACATTTCATCACTAATTTGAAAAATTCTaaataaaataaagtaaaaataacacac-acacaaaacagacaaaacaGAGA--ATATATAGATTTTCTAGAATGCACAGCATAGTAAAGACAAGCATGAGTAAAATTATGGTGAAATTTAAGCCATGAGGGTCAGTGCATCTTAATGCCCTGTGACATTGTACTTGAGGGTTTACCTGTAGATTAATACCCTTTAAGCATGAGAACTACTGATTGAGAGAACTTCAAATGAATTTGCTTCTAGTGTGTTGATAAAGTTAAATGTGATTTATCATAGGTGGGTAAGAATATGGTTGGTAGATAGGAGACAACAGGGCTAGGATATTCGGAAAATAACCTCCAGCAAGCTTTGTAAAAGCAAAAGCATATATTGATGTAAAA-ACTTTACATATGTAATTGCATGATATACCATCATGTTGCTCAAACTGCATTAAAGTGTGATTAAGAATTCACCAC---AATGTATGTTGATGTAAT----AGTAAATATCAGATTATGTCATAATTTTTCTTAGAATTATGGCTTGAGTGATCTATTTGACACAGT-TATTATTGTTAATG--ATTTTAAATATTTTCATCTAA--TTTCAAGCTTTTGG-TTTTCTTTAATGTACTT----TATCATTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5485829 1654 +   6154872 gaagagtgaaacatttaagaaagaaagttaatttagggatgcattagccaggttgtgtgt----aatgagagctcagttctctaaaggccttctgaaaagcacacaggatgtttttgcctgaagggagagctgctggaccatttattcctagttaaaattcttcattgttggaggatttcccctagggtcattaagcattttgta---cttctaggcagcacttgtctatatgccaaatgggctcccatggtgtcagacaag--ccttggggccaagggaagccctatacagcatacttgaggtaggtcactgtcagtatgtgtgagat-aatctgagatcacacacaactgtcccttgcagctctgctgaaattagagctgggctgaggagatgtgatacactggtactagaggcatctactTTAGAAGGTGAGATAGAAATGCTGTATTTTACAtttacaaccataggaatggaggtgtgctggcttttaccatgaactcccccagatagtgt----tctgaaaagcaaaggaggccaactaaaataaaat---ca-cagggaaaactatatttgcaggaagaagATAATCTCAAGAGAAGCAGAGATTAA-GAGTATTCTTGAATTTTGCATAGTAAAAACCATCTAGTCTAAGACTGTctcccctaaccaaggaccttttacaaatagttgatccagggg----aaaaaaaagcatctccttcaatgattagtaatttaaaaggaacTGGAAGAGATAAGACATATGGATGCATACAT----ATATAAAAATAGCTAGATAGAGAC--GCAGGTGATAATATACAAGAAAGAAAATGGGGAAAGGAAAAGCAATCTGAATAGACAAAAAACG-AAACCAGTAGTTAGTGGTTATGAAGTGGATGAAAATCGAAGGATGGGATAAGAGGCAGGTTGATTCTGAACATGGAAAAATCTACAAGACTGAGATTCTTTAAAACATCAAACTACTCTTCTACTTTAATATAATATCAAACTCAAATTCACAACCAAAGTGGTAACATTTCATCACTAATTTGAAAAATTCTAAATAAAATAAAGGAAAAATAACACAC-ACACAAAACAGACAAAACAGAGAATATATATAGATTTTCTAGAATGCACAGCATAGTAAAGACAAACATGAGTAAAATTATGGTGAAATTTAAGCCATGAGGGTCAGTGCATCTTAATGCCCTGTGACATTGTACTTGAGGGTTTACCAGTAGATTAATACCCTTTAAGCATGAGAATTACTGATTGAGAGAACTTCAAATGAATTTGCTTCTAGTGTGTTGATAAAGTTAAATGTGATTTATCATAGGTGGGTAAGAATATGGTTGGTAGATAGGAGACAACAGGGCCAGGATATTCAGAAAATAACCTCCAGCAAGCTTTGTAAAAGCAAAAGCATATATTGATGTAAAA-ACTTTACATATGTAATTGCATGATATACCATCATGTTGCTCAAACTGCATTAAAGTGTGATTAAGAATTCACCAC---AATGTATGTTGATGTAAT----AGTAAATATCAGATTATGTCATAATTTTTCTTAGAATTATGGCTTGAGTGATCTATTTGACACAGT-TATTATTGTTAATG--ATTTTAAATATTTTCATCTAA--TTTCAAGCTTTTGG-TTTTCTTTAATGTACTT----TATCATTATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74392440 1653 + 122973662 gaagagtgaaacatttaagaaagaaaggtaatttagggatgcattagccaggttgtgtgt----aatgagagctcagttctctaaaggccttctgaaaagcacacaggatgtttttacctgaaggaagagctgctggatcatttattcctagttaaaattcttcattgttggaggatttcccctagggtcattaagcattttgta---cttctaggcagcacttgtctgtatgccaaatgggctcccatggtgtcagacaag--ccttggggccgaggggagccctatacagcatacttgaggtaggttgctgtcggtatgtgtcagatgaatctgagttcacacaaaactgtcccttgcagctctgctgaaattagagctgggctgaggagatgtgatacactggtactagaggcatctactTTAGAAGGTAAGATAGAAATGCTGTATTTTACAtttacaaccataggaatggaggtgtgctggcttttaccatgaactcccccagatagtgt----tctgaaaagcagaggaggccaactaaaataaaat---ca-cagggaaaactatatttgcaggaagaagATAATCTCAAGAGAAGCAGAGATTAA-GAGTATTCTTGAATTTTCCATAGTAAAAACCATCTAGTCTAAGACTctctcccctaaccaaggacgttttacaaatagttgatccaggaa----aaaaaaaagcacctccttcaatgattagtaatttaaaaggaacTGGAAAAGATAAGACATACGGATGGCTACAT----ATATAAAACTAGCTAGGTAGAGACCTGCAGGTGATAATATACAAGGAAGAAAATGGAGAAAGGAAAAGCAATCTGAATAGATAAAAAACG-AAATCAGTAGTTAGTGGTTATGAAGTGGATGAAAATCGAAGGATGGGTTAAGAGGCAGGTTGATTCTGGACATGGAAAAATCTACAAGACTTAGATTCTTTAAAACATCAAACTACTCTTCTACTTTAATATAATATCAAACTCAAATTAACAACCAAAGTGGTAACATTTCATCACTAATTTGAAAAATTATAAATAAAATAAAGGAAAAATAACACAC-AGACAAAACAGACAAAAAGGAGA--ATATATAGATTTTCTAGAATGCACAGCATAGTAAAGACAAACGTGAGTAAAATTATGGTGAAATTTAAGCCATGAGGGTCAGTGCATCTTAATGCCCTGTGACATTGTACTTGAGGGTTTACCTGTAGATTAATACCCTTTAAGCATGAGAACTACTGATTGAGAGAACTTCAAATGAATTTGCTTCTAGTGTGTTGATAAAGTTAAATGTGATTTATCATAGGTGGGTAAGAGTATGGTTGGTAGATAGGAGACAACAGGGCTAGGATATTCAGAAAATAACCTCCAGCAAGCTTTGTAAAAGCAAAAGCATATATTGATGTAAAA-AGTTTACATATGTAATTGCATGATATACCATCATGTTGCTCAAACTGCATTAAAGTGTGATTAAGAATTCACCAC---AATGTATGTTGACGTAAT----AGCAAATATCAGAT--TGTCATAATTTTTGTTAGAATTATGGCTTGAGTGATCTATTTGACACAAT-TATTATTGTTAATG--ATTTTAAATATTTTCATCTAA--TTTCAAGCTTTTGG-TTTTCTTTAATATACTT----TATCATTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29694602 1652 + 172585720 gaagagttaaacatttaagaaagaaaggtaatttagggatgcattagccaggttgtgtgt----aatgggagtccagttctctaaagaccttctgaaaagcacatggcatgtttttgcctgaaggaagagcttctggaccatttattcctagttaaaattcttcattgttggaggatttcccctagggtcattaagcattttgta---cttctaggcagcacttgtctataagccaaatgggctcccatggtgtcagacaag--ccttggggccgagggaagctatatacagcatacttgaggtaggtcactctcagtatgtgtgagatgaatctgcattcacatacaactgtcccttgcagctctgctgaaattagagctgggctgaggagatgtgatacactggtactagaggcacctactTTAGAAGGTGAGATAGAAATGCTGTATTTTACATTTATAACCTTAGGAATGGAGGTGTGCTGTCTTTTACCATGAACTCCCCCAGATAGTGT----TCTGCAAAGCAGAGGAGGCCAACTAAAATAAAAT---CA-CAGGAAAAATTATATTTGCGGGAAGAAGATAATCTCAAGAGAAGCAGAGATTAA-GAGTATTCTTGAATTTTGCGTAGTAAAAACCATCTAGTCTAAAACTctctcccctaaccaaggaccttttacaaatagttgatccagg------aaaaaaatgcatctccttcaatgattagtaatttaaaaggaacTGGAAGAGATAAGACATACGGATGGATACAT----ATATAAAACTAGCTAGGTAGAGACCTGTAGGTGATAATATACAAGAAAGAAAATGGGGAAAGGAAAAGCAATCTGAATAGACAAAAAATG-AAATCAGTAGTTAGTGGTTATGAAGTGGATGAAAATCGAAGGATGGGATAAGAGGCAGGTTGATTCTGGACATGGAAAAATCTACAAGACTGAGATTCTTTAAAACATCAAACTACTCTTCTACTTTAATGTAATATCAAACTCAAATTCACAACTAAAGTGGTAACATTTCATCATTAATTTGAAAAATTCTAAAGAAAATAAAGGAACAATAACACACAAA--AAAACAGACAAAAAGGAGA--ATGTATAGATGTTGTAGAATGCACAGCATAGTAAAGACAAATGTGAGTAAAATTATGGTGAAATTTAAGCCATGAGGGTCATTGCATCTTAATGCCCTGTGACATTTTACTTGTGGGTTTACCTGTAGATTAAAACCCTTTAAGCATGAGAACTACTGATTGAGAGAACTTCAAATGAATTTGCTTCTAGTGTATTGATAAAGTTAAATGTGACATATCATAGGTGGGTAAGAATATGGTTGGAAGATAGGAGACAACAGGGCTAGGATATTCAGAAAATAACCTCCAGCAAGCTTTGTAAAAGCAAAAGCATATATTTATGTAAAC-ATTTTACATATGTAATTGCATAATATACCATCATGTTGCTCAAACTACATTAAAGTGTGATTAAGAATTCACCAC---AATGTATGATGATGTAAT----AGTAAATATCAGACTATGTCATAATTTTCCTTAGAATTATGGCTTGAGTGGTCTATTTGACACAAT-TATTATTGTTAATT--ATTTTAAATATTTTCATCTAA--TTTCAAGCTTTTGG-TTTTCTTTAATATACGT----TATCATTCTT
i rheMac8.chr4             I 3798 C 0
s macFas5.chr4             29357266 1651 - 170955103 gaagagttaaacatttaagaaagaaaggtaatttagggatgcattagccaggttgtgtgt----aatgggagtccagttctctaaagaccttctgaaaagcacacagtatgtttttgcctgaaggaagagcttctggaccatttattcctagttaaaattcttcattgttggaggatttcccctagggtcattaagcattttgta---cttctaggcagcacttgtctacaagccaaatgggctcccatggtgtcagacaag--ccttggggccgagggaagccatatacagcatacttgaggtaggtcactctcagtatgtgtgaaatgaatctgagttcacacacaactgtcccttgcagctctgctgaaattagagctgggctgaggagatgtgatacactggtactagaggcacctactTTAGAAGGTGAGATAGAAATGCTGTATTTTACATTTATAACCATAGGAATGGAGGTGTGCTGGCTTTTACCATGAACTCCCCCAGATAGTGT----TCTGCAAAGCAGAGGAGGCCAACTGAAATAAAAT---CA-CAGGAAAAATTATATTTGCGGGAAGAAGATAATCTCAAGAGAAGCAGAGATTAA-GAGTATTCTTGGATTTTGCGTAGTAAAAACCATCTAGTCTAAgactctgtcccctaaccaaggaccttttataaatagttgatccagg-a----aaaaaaacacatctccttcaatgattagtaatttaaaaggaacTGGAAGAGATAAGACATACGGATGGATACAT----ATATAAAACTAGCTAGGTAGAGACCCGTAGGTGATAATATACAAGAAAGAAAATGGGGAAAGGAAAAGCAATCTGAATAGGAAAAAAACA-AAATCAGTAGTTAGTGGTTATGAAGTGGATGAAAATCGAAGGATGGGATAAGAGGCAGGTTGATTCTGGACATGGAAAAATCTACAAGACTGAGATTCTTTAAAACATCAAACTACTCTTCTA-TCTAATATAATATCAAGCTCAAATTCACAACTAAAGTGGTAACATTTCATCATTAATTTGAAAAATTCTAAAGAAAATAAAGGAACAATAACACAC-AA--AAAACATACAAAAAGGAGA--ATGTATAGATGTTCTAGAATGCACAGCATAGTAAAGACAAATGTGAGTAAAATTATGGTGAAATTTAAGCCATGAGGGTCAGTGCATCTTAATGCCCTGTGACATTTTACTTGTGGGTTTACCTGTAGATTAAAACCCTTTAAGCATGAGAACTACTGATTGAGAGAACTTCAAATGAATTTGCTTCTAGTGCATTGATAAAGTTATATGTGACATATCATAGGTGGGTAAGAATATGGTTGGAAGATAGGAGACAACAGGGCTAGGATATTCAGAAAATAACCTCCAGCAAGCTTTGTAAAAGCAAAAGCATATATTGATGTAAAA-ATTTTACATATGTAATTGCATAATATACCATCATATTGTTCCAACTACATTAAAGTGTGATTAAGAATTCACCAC---AATGTATGATGATGTAAT----AGTAAATATCAGACTATGTCATAATTTTCCTTAGAATTATGGCTTGAGTGGTCTATTTGACACAAT-TATTATTGTTAATT--ATTTTAAATATTTTCATCTAA--TTTCAAGCTTTTGG-TTTTCTTTAATATACTT----TATCATTCTT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      92567 1652 +    766320 gaagagttaaacatttaagaaagaaaggtaatttagggatgcattagccaggttgtgtgt----aatgggagtccagttctctaaagaccttctgaaaagcacacagtatgtttttgcctgaaggaagagcttctggaccatttattcctagttaaaattcctcattgttggaggatttcccctagggtcattaagcgttttgta---cttctagggagcacttgtctacaagccaaatgggctcccatggtgtcagacaag--ccttggggccgagggaagccatatacagcatacttgaggtaggtcactctcagtatgtgtgaaatgaatctgagttcacacacaactgtcccttgcagctctgctgaaattagagctgggctgaggagacgtgatacactggtactagaggcacctactTTAGAAGGTGAGATAGAAATGCTGTATTTTACAtttataaccataggagtggaggtgtgctggcttttaccatgaactcccccaggtagtgt----tctgcaaagcagaggaggccaactaaaataaaat---ca-caggaaaaattatatttgcgggaagaagATAATCTCAAGAGAAGCAGAGATTAA-GAGTATTCTTGAATTTTGCATAGTAAAAACCATctagtctaagactctgtcccctaaccaaggaccttttataaatagttgatccagg-a----aaaaaaacgcatctccttcaatgattagtaatttaaaaggaacTGGAAGAGATAAGACATACGGATGGATACAT----ATATAAAACTAGCTAGGTAGAGACCTGTAGGTGATAATATACAAGAAAGAAAATGGGGAAAGGAAAAGCAATCTGAATAGGAAAAAAACA-AAATCAGTAGTTAGTGGTTATGAAGTGGATGAAAATCGAAGGATGGGATAAGAGGCAGGTTGATTCTGGACATGGAAAAATCTACAAGACTGAGATTCTTTAAAACATCAAACTACTCTTCTA-TCTAATATAATATCAAGCTCAAATTCACAACTAAGGTGGTAATGTTTCATCATTAATTTGAAAAATTCTAAAGAAAATAAAGGAACAATAACACAC-AA--AAAACAGACAAAAAGGAGA--ATGTATAGATGTTCTAGAATGCACAGCATAGTAAAGACAAATGTGAGTAAAATTATGGTGAAATTTAAGCCATGAGGGTCAGTGCATCTTAATGCCCTGTGACATTTTACTTGTGGGTTTACCTGTAGATTAAAACCCTTTAAGCATGAGAACTACTGATTGAGAGAACTTCAAATGAATTTGCTTCTAGTGTATTGATAAATTTATATGTGACATATCATAGGTGGGTAAGAATATGGTTGGAAGATAGGAGACAACAGGGCTAGGATATTCAGAAAATAACCTCCAGCAAGCTTTGTAAAAGCAAAAGCATATATTGATGTAAAA-ATTTTACATATGTAATTGCATAATATACCATCATATTGCTCCAACTACATTAAAGTGTGATTAAGAATTCACCAC---AATGTATGATGATGTAAT----AGTAAATATCAGACTATGTCATAATTTTCCTTAGAATTATGGCTTGAGTGGTCTATTTGACATGAT-TATTATTGTTAATT--ATTTTAAATATTTTCATCTAA--TTTCAAGCTTTTGGTTTTTCTTTAATATACTT----TATCATTCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28613462 1651 -  71996105 gaagagttaaacatttaagaaagaaaggtaatttagggatgcattagccagattgtgtgt----aatgggagtccagttctctaaagaccttctgaaaagcacacagtatgtttttgcctgaaggaagagcttctggaccatttattcctagttaaaattcttcattattggaggatttcccctagggtcattaagcgttttgta---cttctaggcagcacttgtctacaagccaaatgggctcccatagtgtcagacaag--ccttggggccgagggaagccatatacagcatacttgaggtaggtcactctcagtatgtgtgaaatgaatctgagttcacacacaactgtcctttgcagctctgctgaaattagagctgggctgaggagatgtgatacactggtactagaggcacctactTTAGAAGGTGAGATAGAAATGCTGTATTTTACAtttataaccataggaatggaggtgtgctggcttttaccatgaactcccccagatagtgt----tctgcaaagcagaggaggccaactaaagtaaaat---ta-caggaaaaattatatttgcgggaagaagacaatctcAAGAGAAGCAGAGATTAA-GAGTGTTCTTGAATTTTGCGTAGTAAAAACCATCTAGTCTAAgactctgtcccctaaccaaggaccttttataaatagttgatcaaggaa----aaaaaaacgcatctccttcaatgattagtaatttaaaaggaactggaagaggTAAGACATACAGATGGATACAT----ATATAAAACTAGCTAGGTAGAGACCTGTAGGTGATAATATACAAGAAAGAAAATGGGGAAAGGAAAAGCAATCTGAATAGGAAAAAAAC--AAATCAGTAGTTAGTGGTTATGAAGTGGATGAAAATCGAAGGATGGGATAAGGGGCAGGTTGATTCTGGACATGGAAAAATCTACAAGACTGAGATTCTTTAAAACATCAAACTACTCTTCTA-TCTAATATAATATCAAGCTCAAATTCACAACTAAAGTGGTAACATTTCATCATTAATTTGAAAAATTCTAAAGAaaataaaggaacaataacaaac-aa--aaaacagacaaaAAGGAGA--ATGTATAGATGTTCTAGAATGCACAGCATAGTAAAGACAAATGTGAGTAAAATTATGGTGAAATTTAAGCCATGAGGGTCAGTGCATCTTAATGCCCTGTGACATTTTACTTGTGGGTTTACCTGTAGATTAAAACCCTTTAAGCATGAGAACTACTGATTGAGAGAACTTCAAATGAATTTGCTTCTAGTGTATTGATAAAGTTATATGTGACATATCATAGGTGGGTAAGAATATGGTTGGAAGATAGGAGACAACAGGGCTAGGATATTCAGAAAATAACCTCCAGCAAGCTTTGTAAAAGCAAAAGCATATATTGATGTAAAA-ATTTTACATATGTAATTGCATAATATACCATCATATTGCTCCAACTACATTAAAGTGTGATTAAGAATTCACCAC---AATGTATGATGATGTAAT----AGTAAATATCAGACTATGTCATAATTTTCCTTAGAATTATGGCTTGAGTGATCTATTTGACACAAT-TATTGTTGTTAATT--ATTTTAAATATTTTCATCTAA--TTTCAAGCTTTTGG-TTTTCTTTAATATACTT----TATCACTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      61508 1651 -    352859 gaagagttaaacatttaagaaagagaggtaatttagggatgcattagccaggttgtgtgt----aatgggagtccagttctctaaagaccttctgaaaagcacacagtatgtttttgcctgaaggaagagcttctggaccatttattcctaattaaaattcttcattgttggaagatttcccctagggtcattaagcgttttgta---cttctaggcagcacttgtctacaagccaaatgggctcccatggtgtcagacaag--ccttggggccgagggaagccatatacagcatacttgaggtaggtcactctcagtatgtgtgaaatgaatctgagttcacacacaactgtcccttgcagctctgctgaaattagagctgggctgaggagatgtgatacactggtactagaggcacctactTTAGAAGGTGAGATAGAAATGCTGTATTTTACAtttataaccataggaatggaggtgtgctggcttttatcatgaactcccccagatagtgt----tctgcaaagcagaggaggcaaactaaaataaaat---ca-caggaaaaattatatttgcgggaagaagATAATCTCAAGAGAAGCAGAGATTAA-GAGTATTCTTGAATTTTGCATAGTAAAAACCATctagtctaagactctgtcccctaaccaaggaccttttataaatagttgatccagg-a----aaaaaaacgcatctccttcaatgattagtaatttaaaaggaacTGGAAGAGATAAGACATACGGATGGATACAT----ATATAAAACTAGCTAGGTAGAGACCTGTAGGTGATAATATACAAGAAAGAAAATGGGGAAAGGAAAAGCAATCTGAATAGGAAAAAAACA-AAATCAGTAGTTAGTGGTTATGAAGTGGATGAAAATCGAAGGATGGGATAAGAGGCAGGTTGATTCTGGACATGGAAAAATCTACAAGACTGAGATTCTTTAAAACATCAAACTACTCTTCTA-TCTAATATAATATCAAGCTCAAATTCACAACTAAAGTGGTAACATTTCATCATTAATTTGAAAAATTCTAAAGAAAATAAAGGAACAATAACACAC-AA--AAAACAGACAAAAAGGAGA--ATGTATAGATGTTCTAGAATGCACAGCATAGTAAAGACAAATGTGAGTAAAATTATGGTGAAATTTAAGCCATGAGGGTCAGTGCATCTTAATGCCCTGTGACATTTTACTTGTGGGTTTACCTGTAGATTAAAACCCTTTAAGCATGAGAACTACTGATTGAGAGAACTTCAAATGAATTTGCTTCTAGTGTATTGATAAATTTATATGTGACATATCATAGGTGGGTAAGAATATGGTTGGAAGATAGGAGACAACAGGGCTAGGATATTCAGAAAATAACCTCCAGCAAGCTTTGTAAAAGCAAAAGCATATATTGATGTAAAA-ATTTTACATATGTAATTGCATAATATACCATCATATTGCTCCAACTACATTAAAGTGTGATTAAGAATTCACCAC---AATGTATGATGATGTAAT----AGTAAATATCAGACTATGTCATAATTTTCCTTAGAATTATGGCTTGAGTGGTCTATTTGACATGAT-TATTATTGTTAATT--ATTTTAAATATTTTCATCTAA--TTTCAAGCTTTTGG-TTTTCTTTAATATACTT----TATCATTCTT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2220394 1652 -   3067355 gaagagttaaacatttaagaaagaaaggtaatttagggatgcattagccaggttgtgtgt----aatgagagtccatttctctaaagaccttctgaaaagcacacagtatgtttttgcctgaaggaagagctgctggaccatttattcctagttaaaattcttcattgttggaggaattcccctagggtcattaagcattttgta---cttctaggcagcacttgtatataagccaaatgggctcccatggtgtcagacaaa--ccttggggccgagggaagccgtatacagcgtgcttgaggtaggtcactgtcagtatgtgtgagacgaatctgagttcacacacaactgtcccttgcagctctgctgaaattagagctgggctgaggaggtgtgatacactggtactagaggcacctactTTAGAAGATGAGATAGAAATGCTGTATTTTACAtttataaccataggaatggaggtgtgctggcttttaccatgaactcccccagatagtgt----tctgcaaagcagaggaggccaactaaaataaaat---ca-caggaaaaattatatttgtgggaagaagATAATCTCAAGAGAAGCAGAGATTAA-GAGTATTCTTGAATTTTGCATAGTAAAAACCATCTAGTCTAAGAgtctctcccctaaccaaggaccttttacaaatagttgatccagg-a----aaaaaaatgcatctccttcaatggttagtaatttaaaaggaacTGGAAGAGATGAGACATACAGATGGATACAT----ATATAAAACTAGCTAGGTAGAGACCTGTAGGTGATAATATACAAGAAAGAAAATGGGGAAAGGAAAAGCAATCGGAATAGACAAAAAACG-AAATCAGTAGTTAGTGGTTATGAAGTGGATGAAAATCGAAGGATGGCATAAGAGGCAGGTTGATTCTGGACATGGTAAAATCTATAAGACTGAGATTCTTTAAAACATCAAACTACTCTTCTACTCTAATATAATATCAAACTCAAATTCACAACTAAAGTGGTAACACTTCATCATTAATTTGAAAAATTCTAAAGAAAATAAAGGAACAATAACACAC-AA--AACACAGACAAAAAGGAGA--ATGTATAGATGTTCTAGAATGCACAGCATAGTAAAGACAAATGTGAGTAAAATTATGGTGAAATTTAAGCCATGAGGGTCAGTGCATCTTAATGCCCTGTGACATTTTACTTGTGGGTTTACCTGTAGATTAAAACCCTTTAAGCATGAGAACTACTGATTGAGAGAACTTCAAATGAATTTGCTTCTAGTGTATTGATAAAGTTAAATGTGACATATGATAGGTGGGTAAGAACATGGTTGGAAGATAGGAGACAACAGGGCTAGGATATTCAGAAAATAGCCTCCAGCAAACTTTGTAAAAACAAAAGCATATATTGATGTAAAA-ATTTTACATATGTAATTGCATAATATACCATCATGTTGCTCAAACTACATTAAAGTGTGATTAAGAATTCACCAC---AATGTATGATGATATAAT----AGTAAATATCAGACTATGTCATAATTTTCCTTAGAATTATGGCTTGAGTGGTCTATTTGACACAAT-TGTTATTGTTAATT--ATTTTAAATATTTTCATCTAA--TTTCAAGCTTTTGG-TTTTCTTTAATATACTT----TATCATTCTT
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037           364890 1317 -    859332 gaagtgtgaaacagataaggaagagagataacattagagtgcattagccatgctgtgaaccaagaaggggagcccagtcttcctgggagc-tcagaaaagcaggcaggctattttcatcggaaagagttgtggttggaaca-----------ttaccatcctccactgtctgaaagttgcccctagggtaattaaattgtttgcattttttctgagaggcacttctacatgtgccaagtgggtttccaaggcatcagagagggccctgggcactcagggaaaatgtgcacagcgtgcttgagt--agtccctgttcatgtgcatgaggtaagtccgaggtcac--tgaattgcccattgcggttctgcaggcctcaagcctgggctgaggagattggacacattgtcaccagaggtatccactTTAGAAGGtaagatgtaaatgctgagtcctccttttgtacccataggaatgggggcgaacctgctctcaggatgaatgcccccagatgctgttaactctgagaagcagaggaggtgagctgaaagaaaatgtccaccggggcaaatgatatttacaggaagaaggcaatttccccacaagcagagataaaggaagggttttgaattttgcatggtgaaaaccagctgggctacgacccttcccctcacccaatagccttttgcacatag----tccaggga-------aaaacacat----tgtaatgactagtaataaaaagggaactaggagagataagatagatggattgatacatagggacagagatacagatagatgtacaaatagaGGTACTACCAT--AAAAAAGAGACCTAGGGAAGGAGGAACAATTCTAATAGACAATCAGCATAAACCAGT-GTTAG-GTTTATGATGTAGATGAAAGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC------------------AGG--ATG-----------------------------------GAATACGAG------------------------------------GCATCTTGGT----------------TTTGGGG-------------------------------------------CTGGGACAAC-CCTGATGGGTCTGCTCCT-GTGTGTGGGTGAAGCCAAATGGGAC-TGTTGCTAGTGGGATGGAA--------GGAGAT-GGAGAAGACAGGACTGGAGTGGTCAGGAAATGA-GTCCTGCAAGCCGGGTAAGAGCAAAGACACATTTTGAGGTAAAATACTTTTGATAAATGCCAGCATGATGTATCATTATGTTGTTGAAGCTACATTGAAGTGAGATTATGATTTCACACTGCAAAAATATGACTACATAATAGAAAGTAAACATCAGACCCCGTCATATTTTTCCTTTGAATCCTGGCTTGAGTGGGCCACTTGACACAATGCattattttttttttaattttaaa-attttCAACTCAATTTCCAAAC--GTGG-TTTTATCCAGTTCACTTCTTCTATCATTTTT
i dasNov3.JH570037         C 0 I 1664
e canFam3.chr35            26138974 64429 +  26524999 I

a score=26015.000000
s hg38.chr6_GL000254v2_alt   480034 5 +   4827813 CATCA
s panTro5.chr6             29461123 5 + 175400573 CATCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29696896 5 + 173848474 CATCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5487483 5 +   6154872 CATCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74394093 5 + 122973662 CATCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29696254 5 + 172585720 CATCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29358917 5 - 170955103 CATCA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      94219 5 +    766320 CATCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28615113 5 -  71996105 CATCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      63159 5 -    352859 CATCA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2222046 5 -   3067355 CATCA
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570037           366207 1664 -    859332 I
e canFam3.chr35            26138974 64429 +  26524999 I

a score=4990966.000000
s hg38.chr6_GL000254v2_alt   480039 968 +   4827813 AAGAAGGTCATGTAGAAATATAATGTTTCTTTTTTCTAGATGTTA-TTTTTACTCATG--CTCTGCAAAACTTTGGTAATAAATTTTGGTTTCTGGAACA-------ATCCATTG--AACAGTTTCATCATC------ATGATaattattgctaacttacattgaacagttactttgtgccaagaacactttttagtatttc-ccacatttgcacatttaatctctccaacaagcatatgtaggtttttaattttg-ctcgttttccaaatacaaaa-tctaaggaaagaactaaagtaag-aacaaaaatgttaactacttttcctaacatcacacagcatgaaggtggctgagggagaattcaagctcaTCAAT-AACAGACAGAGTGAAAAGGAGGAATGGAGAAGAGGAGAATGAGAGAGAAAAAAGAGAAGATAAAGGGAGAAGATCCAGGGAGAGAAGAGGGGAAGGAAA-AGAGAGAAACATGGGAGACAGAGAGTGAAATAAATCAAGATACAAGGTCACAGAGAAATAAGAGAACAAAAGAAATAGAGAA--AGTTATAAAGCTAATAGGCAGTGATTAGAACTATGTAATAA-----ATGTGGTAAAT---GTATACTCTTTGAGAGCACAGATGAAACACATCT---AATATTTAGCAAAGTGA--TTTTCACTAGCAGGTGCTT-ACATGTATTTTATATAATATTTATAATGAACAATTTTAATCAGAGACAAAATATGAGGAAGATGTAAAAGAGGAAGAGAGAGAGTGAATGATGAATATCAAAGATTAAAGCACTTCACTAAATCTTGTATTTTTT---CCCAAAATACAGCTGGTGAAAATCTTATCCTTGAGTAGAAAGGAATCAAACAAGTCATATACCACCCGTCTTCCTGTCTGTACTGGAACCATCACAGGCTTTTGAGGAACTACTTTTGAACCGTTCCCCAGAGAGGCATTTGCCCCAGTAGCTATGATTATAATTTGCAATGACAG
s panTro5.chr6             29461128 969 + 175400573 AAGAAGGTCATGTAGAAATATAATGTTTCTTTTTTCTAGATGTTA-TTTTTACTCGTG--CTCTGCAAAACTTTGGTAATAAATTTTGGTTTCTGGAACA-------ATCCATTG--AACAGTTTCATCATC------ATGATaattattgctaacttacattgaacagttactttgtgccaagaacactttttagtatttc-ccacatttgcacatttaatctctccaacaagcatatgtaggtttttaattttg-cccgttttccaaatacaaaa-tctaaggaaagaactaaagtaag-aacaaaaatgttaactacttttcctaacatcacacagcatgaaggtggctgagggagaattcaagcTAATCAAT-AACAGACAGAATGAAAAGGAGGAATGgagaagaggagaatgagagagaaaaaagagaagataaagggagaagatccagggagagaagaggggaaggaaagagagagaaacatgggagacagagagtgaAATAAATCAAGATACAAGGTCACAGAGAAATAAGAGAACAAAAGAAATAGAGAA--AGTTATAAAGCTAATAGGCAGTGATTAGAACTATGTAATAA-----ATGTGGTAAAT---GTATACTCTTTGAGAGCACAGATGAAACACATCT---AATATTTAGCAAAGTGA--TTTTCACTAGCAGGTGCTT-ACATGTATTTTATATAATATTTATAATGAACAATTTTAATCAGAGACAAAATATGAGGAAGATGTAAAAGAGGAAGAGAGAGAGTGAATGATGAATATCAAAGATTAAAGCACTTCACTAAATCTTGTATTTTTT---CCCAAAATACAGCTGGTGAAAATCTTATCCTTGAGTAGAAAGGAATCAAACAAGTCATATACCACCCGTCTTCCTGTCTGTACTGGAACCATCACAGGCTTTTGAGGAACTACTTTTGAACCGTTCCCCAGAGAGGCATTTGCCCCAGTAGCTATGATTATAATTTGCAATGACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29696901 967 + 173848474 AAGAAGGTCATGTAGAAATATAATGTTTCTTTTTTCTAGATGTTA-TTTTTACTCATG--CTCTGCAAAACTTTGGTAATAAATTTTGGTTTCTGGAACA-------ATCCATTG--AACAGTTTCATCATC------ATGATaattattgctaacttacattgaacagttactttgtgccaagaacactttttagtatttc-ccacatttgcacatttaatctctccaacaagcatatgtaggtttttaattttg-cccgttttccaaatacaaaa-tctaaggaaagaactaaagtaag-aacaaaaatgttaactacttttcctaacatcacacagcatgaaggtggctgagggagaattcaagcTAATCAAT-AACAGACAGAATGAAAAGGAGGAATGgagaagaggagaatgagagagaaaaaagagaagataaagggagaagatccagggagagaagaggggaaggaa--agagagaaacatgggagacagagagtgaAATAAATCAAGATACAAGGTCACAGAGAAATAAGAGAACAAAAGAAATAGAGAA--AGTTATAAAGCTAATAGGCAGTGATTAGAACTATGTAATAA-----ATGTGGTAAAT---GTATACTCTTTGAGAGCACAGATGAAACACATCT---AATATTTAGCAAAGTGA--TTTTCACTAGCAGGTGCTT-ACATGTATTTTATATAATATTTATAATGAACAATTTTAATCAGAGACAAAATATGAGGAAGATGTAAAAGAGGAAGAGAGAGAGTGAATGATGAATATCAAAGATTAAAGCACTTCACTAAATCTTGTATTTTTT---CCCAAAATACAGCTGGTGAAAATCTTATCCTTGAGTAGAAAGGAATCAAACAAGTCATATACCACCCGTCTTCCTGTCTGTACTGGAACCATCACAGGCTTTTGAGGAACTACTTTTGAACCGTTCCCCAGAGAGGCATTTGCCCCAGTAGCTATGATTATAATTTGCAATGACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5487488 969 +   6154872 AAGAAGGTCATGTAGAAATATAATGTTTCTTTTTTCTAGATGTTA-TTTTTACTCATG--CTCTGCAAAACTTTGGTAATAAATTTTGGTTTCTGGAACA-------ATCCATTG--AACAGTTTCATCATC------ATGATaattattgctaacttacattgaacagttactttgtgccaagaacactttttagtatttc-ccacatttgcacatttaatctctccaacaagcatatgtaagttcttaattttg-cccgttttccaaatacaaaa-tctaaggaaagaactaaagtaag-aacaaaaatgttaactacttttcctaacatcacacagcatgaaggtggctgagggagaattcaagctcaTCAAT-AACAGACAGAGTGAAAAGGAGGAATGGAGAAGAGGAGAATGAGAGAGAAAAAAGAGAAGATAAAGGGAGAAGATCCAGGGAGAGAAGAGGGGAAGGAAAGAGAGAGAAACATGGGAGACAGAGAGTGAAATAAATCAAGATACAAGGTCACAGAGAAATAAGAGAACAAAAGAAATAGAGAA--AGTTATAAAGCTAATAGGCAGTGATTAGAACTATGTAATAA-----ATGTGGTAAAT---GTATACTCTTTGAGAGCACAGATGAAACACATCT---AATATTTAGCAAAGTGA--TTTTCACTAGCAGGTGCTT-ACATGTATTTTATATAATATTTATAATGAACAATTTTAATCAGAGACAAAATATGAGGAAGATGTAAAAGAGGAAGAGAGAGAGTGAATGATGAATATCAAAGATTAAAGCACTTCACTAAATCTTGTATTTTTT---CCCAAAATACAGCTGGTGAAAATCTTATCCTTGAGTAGAAAGGAATCAAACAAGTCATATACCACCCGTCTTCCTGTCTGTACTGGAACCATCACAGGCTTTTGAGGAACTACTTTTGAACCGTTCCCCAGAGAGGCATTTGCCCCAGTAGCTATGATTATCATTTGCAATGACAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74394098 967 + 122973662 AAGAAGGTCATGTAGAAATATAATGTTTCTGTTTTCTAAATGTTA-TTTTTACTCATG--CTCTGCAAAACTTTGGTAATAAATTTTGGTTTCTGGAACA-------ATCCATTG--AACAGTTTCATCATC------ATGATAATTACTGctaacttacattgaacagttactttttgccaagaacactttttagtatttc-ccacgtttgcacatttaatctctccaacaagcatatgtaggtttttaattttg-cctgttttccaaatacaaaa-tctaaggaaagaactaaggtaag-aacaaaaatgttaactacttttcctaacatcacacagcataaaggtggctgagggagaattcaagctcaTCAAT-AACAGACAGAGTGAAAAGGAGGAATGGAGAAGAGGAGAATGAGAGAGAAAAAAGAGAAGATAAAGGGAGAAGATCCAGGGAGAGAAGAGGGGAAGGAAAGAGAGAGAAACATGGGAGACAGATAGTGAAATAAATCAAGATACAAGGTCACAGAGAAATAAGAGAACAAAAGAAATAAAG----AGTTATAAAGCTAATAGGCAGTGATTAGAACTATGTGATAA-----ATGTGGTAAAT---GTATACTCTTTGAGAGCACAGATGAAACACATCT---AGTATTTAGCAAAATGA--TTTTCACTAGCAGGTGCTT-ACATGTATTTTATATAATATTTATAATGAACAATTTTAATCAGAGACAAAATATGAGGAAGATGTAAAAGAGGAAGAGAGAGAGTGAATGAGGAATCTCAAAGATTAAAGCACTTCACTAAATCTTGTATTTTTT---CCCAAAATACAGCTGGTGAAAATCTTATCCTTGAGTAGAAAGGAATCAAACAAGTCATATACCACCCGTCTTCCTGTCTGTACTGGAACCATCACAGGCTTTTGAGAAACTACTTTTGAACCATTCCCCAGAGAGGCATTTGCCCCAGTAGCTATGATTATAATTTGCAATGACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29696259 967 + 172585720 AAGAAGGTCATGTAGAAATATAATGTTTCTTTTTTCTAAATGTTA-TTTTTACTCATGCCCTCTGCAAAACTTTGGTAATAAATTTTGGTTTCTGAAACA-------ATCTATTG--AACAGTGTCATCATC------ATGATaattattgctaacttacattgaacagttactttgtgccaagaacactttttagtatttc-ccccattttcacatttaatttttccaacaagcatatgtaggtttttaattttg-cctattttccaaatagaaaa-tctaaggaaagaactaaggtaag-aacaaaaatgttaaccacttttcctaatatcacacagcataaaggtgactgagggagaattcaagcttaTCAAT-Aagagacagagtgaaaaggaggaatggagaagaggagaatgagagagcaaaaagagaagataaagagagaatatccagggagagaagaggggaaggaaagagag-gaaagatgggag----aCAGTGAAATAAATCAAGATACAAGGTCACAGAGAACTAAGAGAACAAAAGAAATAGAGAAAGAGTTATAAAGCTAATATGCAGTGAATAGAACTATGTAATAA-----ATGTGGTAAAT---GTATACTCTTTGAGAG--CAGATGGAACACATCT---AATATTTAGCAAAGTGA-TTTTTTACTAGCTGGTGCTT-ACATATATTTTATATAATATTTATAATGAACAATTTTAATCAGAGACAaaatatgaggaagatgtaaaagaagaagagagagagtgaatgatgaatatcaaagattaaagCACTTCACTAAATCTTGCATTTTTT---CCCAAAATACAGCTGGTGAAAATCTTATCCTTGAGTAGAGAGGAATCAAACAAGTCATATACCACCCTTCTTCCTGTCTGTACTGGAACCATCACAGGCTTTTGAGCAACTACTTTTGAAACATTTCCCAGAGAGGTATTTGCCCCAGTAGCTATGATTATAATTTGCAATGACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29358922 969 - 170955103 AAGAAGGTCATGTAGAAATATAATATTTCTTTTTTCTAAATGTTA-TTTTTACTCATGCTCTCTGCAAAACTTTGGTAATAAATTTTGGTTTCTGAAACA-------ATCTATTG--AACAGTGTCATCATC------ATGATaattattgctaacttacattgaacagttactttgtgccaagaacactttttagtatttc-ccctgttttcacatttaatttctccaacgagcatatgtaggtttttaattttg-cctattttccaaatagaaaa-tctaaggaaagaactaaggtaaa-aacaaaaatgttaatgacttttcctaatatcacacagcataaaggtgactgagggagaattcaagctcaTCAAT-AAGAGACAGAGTGAAAAGGAGGAATGGAGAAGAGGAGAATGAGAGAGAAAAAAGAGAAGATAAAGGGAGAATATCCAGGGAGAGAAGAGGGGAAGGAAAGAGAG-GAAAGATGGGAG----ACAGTGAAATAAATCAAGATACAAGGTCACAGAGAACTAAGAGAACAAAAGAAATAGAGAAAGAGTTATAAAGCTAATATGCAGTGAATAGAACTATGTAATAA-----ATGTGGTAAAT---GTATACTCTTTGAGAGCACAGACGGAACACATCT---AATATTTAGCAAAGTGA-TTTTTTACTAGCTGGTGCTT-ACATATATTTTATATAATATTTATAATGAACAATTTTAATCAGAGACAAAATATGAGGAAGATGTAAAAGAGGAAGAGAGAGAGTGAATGATGAATATCAAAGATTAAAGCACTTCACTAAATCTTGCATTTTTT---CCCAAAATACAGCTGGTGAAAATCTTATCCTTGAGTAGAGAGGAATCAAACAAGTCATATACCACCCTTCTTCCTGTCTGTACTGGAACCATCACAGGCTTTTGAGCAACTACTTTTGAAACATTCCCCGGAGAGGTATTTGCCCCAGTAGCTATGATTATAATTTGCAATGACAG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      94224 969 +    766320 AAGAAGGTCATGTAGAAATATAATATTTCTTTTTTCTAAATGTTA-TTTTTACTCATGCTCTCTGCAAAACTTTGGTAATAAATTTTAGTTTCTGAAACA-------ATCTATTG--AACGGTGTCATCATC------ATGATaattattgctaacttacattgaacagttactttgtgccaagaacactttttagtatttc-ccccgttttcacatttaatttctccaacaagcatatgtaggtttttaatttcg-cctattttccaaatagaaaa-tctaaggaaagaactaaggtaag-aacaaaaatgttaaccacttttcctaatatcacacagcataaaggtgactgagggagaattcaagctcaTCAAT-Aagagacagagtgaaaaggaggaatggagaagaggagaatgagagagaaaaaagggaagataaagggagaatatccagggagagaagaggagaaggaaagagag-gaaagatgggag----aCAGTGAAATAAATCAAGATACAAGGTCACAGAGAACTAAGAGAACAAAAGAAATAGAGAAAGAGTTATAAAGCTAATATGCAGTGAATAGAACTATGTAATAA-----ATGTAGTAAAT---GTATACTCTTTGAGAGCACAGATGGAACACATCT---AATATTTAGCAAAGTGA-TTTTTTACTAGCTGGTGCTT-ACATATATTTTATATAATATTTATAATGAACAATTTTAATCAGAGAAAAAATATGAGGAAGATGTAAAAGAGGAAGAGAGAGAGTGAATGATGAATATCAAAGATTAAAGCACTTCACTAAATCTTGCATTTTTT---CCCAAAATACAGCTGGTGAAAATCTTATCCTTAAGTAGAGAGGAATCAAACAAGTCATATACCACCCTTCTTCCTGTCTGTACTGGAACCATCACAGGCTTTTGAGCAACTACTTTTGAAACATTCCCCAGAGAGGTATTTGCCCCAGTAGCTATGATTATAATTTGCAATGACAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28615118 969 -  71996105 AAGAAGGTCATGTAGAAATATAATATTTCTTTTTTCTAAATGTTA-TTTTTACTCATGCTCTCTGCAAAACTTTGGTAATAAATTTTGGTTTCTGAAACA-------ATCTATTG--AACAGTGTCATCATC------ATGATaattattgctaacttacattgaacagttactttgtgccaagaacactttttagtatttc-ccccgttttcacatttaatttctccaacaagcatatgtaggtttttaatttcg-cctattttccaaatagaaaa-tctaaggaaagaactaaggtaag-aacaaaaatgttaaccacttttcctaatatcacacagcataaaggtgactgagggagaattcaagctcaTCAAT-AAGAGACAGAGTGAAAAGGAGGGATGGAGAAGAGGTGAATGAGAGAGAAAAAAGAGAAGATAAAGGGAGAATATCCAGGGAGAGAAGAGGGGAAGGAAAGAGAG-GAAAGATGGGAG----ACAGTGAAATAAATCAAGATACAAGGTCACAGAGAACTAAGAGAACAAAAGAAATAGAGAAACAGTTATAAAGCTAATATGTAGTGAATAGAACTATGTAATAA-----ATGTAGTAAAT---GTATACTCTTTGAGAGCACAGATGGAACACATCT---AATATTTAGCAAAGTGA-TTTTTTACTAGCTGGTGCTT-ACATATATTTTATAGAATATTTATAATGAACAATTTTAATCAGAGACAAAATATGAGGAAGATGTAAAAGAGGAAGAGAGAGAGTGAATGATGAATATCAAAGATTAAAGCACTTCACTAAATCTTGTATTTTTT---CCCAAAATACAGCTGGTGAAAATCTTATCCTTGAGTAGAGAGGAATCAAACAAGTCATATACCACCCTTCTTCCTGTCTGTACTGGAACCATCACAGGCTTTTGAGCAACTACTTTTGAAACATTCCCCAGAGAGGTATTTGCCCCAGTAGCTATGATTATAATTTGCAATGACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      63164 969 -    352859 AAGAAGGTCATGTAGAAATATAATATTTCTTTTTTCTAAATGTTA-TTTTTACTCATGCTCTCTGCAAAACTTTGGTAATAAATTTTGGTTTCTGAAACA-------ATCTATTG--AACGGTGTCATCATC------ATGATaattatcgctaacttacattgaacagttactttgtgccaagaacactttttagtatttc-ccccgttttcacatttaatttctccaacaagcatatgtaggtttttaatttcg-cctattttccaaatagaaaa-tctaaggaaagaactaaggtaag-aacaaaaatgttaaccacttttcctaatatcacacagcataaaggtgactgagggagaattcaagctcaTCAAT-AAGAGACAGAGTGAAAAGGAGGAATGGAGAAGAGGAGAATGAGAGAGAAAAAAGGGAAGATAAAGGGAGAATATCCAGGGAGAGAAGAGGGGAAGGAAAGAGAG-GAAAGATGGGAG----ACAGTGAAATAAATCAAGATACAAGGTCACAGAGAACTAAGAGAACAAAAGAAATAGAGAAAGAGTTATAAAGCTAATATGCAGTGAATAGAACTATGTAATAA-----ATGTAGTAAAT---GTATACTCTTTGAGAGCACAGATGGAACACATCT---AATATTTAGCAAAGTGA-TTTTTTACTAGCTGGTGCTT-ACATATATTTTATATAATATTTATAATGAACAATTTTAATCAGAGACAAAATATGAGGAAGATGTAAAAGAGGAAGAGAGAGAGTGAATGATGAATATCAAAGATTAAAGCACTTCACTAAATCTTGCATTTTTT---CCCAAAATACAGCTGGTGAAAATCTTATCCTTAAGTAGAGAGGAATCAAACAAGTCATATACCACCCTTCTTCCTGTCTGTACTGGAATTATCACAGGCTTTTGAGCAACTACTTTTGAAACATTCCCCAGAGAGGTATTTGCCCCAGTAGCTATGATTATAATTTGCAATGACAG
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2222051 974 -   3067355 AAGAAGATCATGTAGAAATATAATGTTTCTTTTTTCTAAGTGTTATTTTTTACTCATGCTCTCTGCAAAACTTTGGTAATAAATTTTGGTTTCTGAAACA-------ATCTATTG--AACAGTGTCATAATC------ATGATaattattgctaacttacattgaacagttactttgtgccaagaacactttttagtatttg-ccccgttttcacatttaatttctccaacaagcatatgtaggtttttaattttg-cctgttttccaaatagaaaa-tctaaggaaagaactaaggtaag-aacaaaaatgttaaccacttttcctaatatcacacagcataaaggtgactgagggagaattcaagctcaTCAAT-AAGAGACAGAGTGAAAAGGAGGAATGGAGAAGAGGAGAATGAGAGAGAGAAAAGAGAAGATAAAGGGAGAATATCCAGGGAGAGAAAAGGGGAAGGAAAGAGAG-GAAAGATGGGAGACAAACAGTGAAATAAATCAAGATACAAGGTCACAGAGAACTAAGAGAACAAAAGAAATAGAGAAAGAGTTATAAAGCTAATATGCAGTGAATAGAACTATGTAATAA-----ATGTGGTAAAT---GTATACTCTTTAACAGCACAGATGGAACACATCT---AATATTTAGCAAAGTGA-TTTTTTACTAGCTGGTGCTT-ACATATATTTTATATAATATTTATAATGAACAATTTTAATCAGAGACAAAATACGAGGAAGATGTAAAAGAGGAAGAGAGAGAGTGAATGATGAATATCAAAGATTAAAGCACTTCACTAAATCTTGTGTTTTTT---CCCAAAATACAGCTGGTGAAAATCTTATCCTTGAGTAGAGAGGAATCAAACAAGTCATATACCACCCTTCTTCCTGTCTGTACTGGAACCATCACAGGCTTTTGAGCAACTACTTTTGAAACATTCCCCAGAGAGGTATTTGCCCCAGTAGCTATGATTATAATTTGCAATGACAG
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570037           367871 930 -    859332 AAAAAGGTAATGTAAAGATATGG---------TTTCTAAATATTA-TTATTATGTTTA--CTCTG--AAATTT----------TTTTGGTTCTTTGAACATAGATTCATCTTTTGATAATATTATCATCATCACAACTATGCTaattacagctaacatacattgaacagttaatatgtgtgaggaactcttttctgtatttcttcattttttcacatataatatttccaccaagtataggtaggttctaggatttgccccattttccaaatacaaaacttcaaagaaataactaaagtaagaaacaaaaaggttaaataatttttctcagatcacacagcttgaaagtgcctgaggaagcattcaagttcagAAATGAagagagaacatgaaggaaagaaatagggaaggggagaaagagggcagaaagagggaaggaaaggggaggagactgagcgagagcagagataaaagggagaggaagaaacatgggag--agaaaTTCAGATAAACTGAGATTCAGATAAACAAGGCAGTAAGAGAACATGAGGAAGAGAGGA------GGAAAGGTAATGTGCATTGAGCAGTACTGTATACCAAACTCTATGTGATAAATGGGGCACAATCTCTCAGAGCAAAGATAAGATGAGTCTTGGAAATGTTGGCAAAGTTATTTTTTTGCTGGGAGGTGATTAAAATGTATTTCACATAATATTTATAATGTATCTTTCTAATTAAACACAAAATATGATGAAGTTGTGAAAGAGAAAGAAATAGAATGAATGATGGACATCAATGATTAAAG-------------CTGGTATTTCTTTCCCCCAAAATATGGCACATCAAAATT---TCCTTG---------------------------ACTACCTCTCTTT---TCTGTACTGGCACCTTCACATTCCAT--AGCAACTGCTTTTGAACCTATCACCAAAGAGACCATTGTCCCAGAAGCTA-GGTCCCAGTGTGCGATGGCAG
i dasNov3.JH570037         I 1664 C 0
e canFam3.chr35            26138974 64429 +  26524999 I

a score=4216479.000000
s hg38.chr6_GL000254v2_alt   481007 695 +   4827813 CCACAGTGATTTCATCCTTCTGGGCTTCTCTAACAAGCCA-CATTTGGAGAAGATAC-TTTTTGGATCA-TTTTTATTTTTTAT-------TTTTTGACTCTTGCAGGAAATATGGTCATAGTTCTTGTGTCCTTGAAGGATCCAAAACTCCACATCCCTATGTATTTC-TTTCTTTCCAACCTTTCCTTGGTAGACCTCTGTTTGACCAGCAGCTGTGTTCCACAGATGTTGATTAACTTCTGGGGCCCAGAAAAGACCATCAGCTACATTGGCTGTGCCATTCAACTCTATGTTTTTTTGTGGCTTGGGGCCACGGAATGTGTCCTTCTTGTTGTCATGGCTGTGGATTGTTATGTAGCAGTGTGTCATCCACTGCAAAATACCATGATCATGCACCCAAAACTT-TGTCTGCAGCTGGCTATCTTGGCATGGGGGACTGGCTTGGCCCAGTCTCTGATCCAGTCCCCTGCCACCCTCCGGTTACCCTTCTGCTCCCAGCGGATGGTGGATGATGTTGTTTGTGAAGTCCCAGCTCTGATTCAGCTCTCCAGTACTGATACTACCTACAGTGAAATTCAGATGTCTATCGCCAGTGTTGTCCTCCTGGTGATGCCCTTGATCATTATCCTTTCCTCTTCTGGTGCTATTGCTAAGGCTGTGCTGAGAATTAAGTCAACTGCAGGACAGAAGAAAGCATTTGGCAC
s panTro5.chr6             29462097 691 + 175400573 CCACAGTGATTTCATCCTTCTGGGCTTCTCTAACAAGCCA-CATTTGGAGAAGATAC-TTTTTGGATCA-TTTTTATTTTTTAT-------TTTTTGACTCTTGCAGGAAATATGGTCATAGTTCTTGTGTCCTTGAAGGATCCAAAACTCCACATCCCTA-GTATTTC-TTTCTTTCCAACCTTTCCTTGGTAGACCTCTGTTTCACCAGCAGCTGTGTTCCACAGATGTTGATTAACTTCTGGGGCCCAGAAAAGACCATCAGCTACATTGGCTGTGCCATTCAACTCTATGTTTTTTTGTGGCTTGGGGCCACGGAATGTGTC---CTTGTTGTCATGGCTGTGGATTGTTATGTAGCAGTGTGTCATCCACTGCAATATACCATGATCATGCACCCAAAACTT-TGTCTGCAGCTGGCTATCTTGGCATGGGGGACTGGCTTGGCCCAGTCTCTGATCCAGTCCCCTGCCACCCTCCGGTTACCCTTCTGCTCCCAGCGGATGGTGGCTGATGTTGTTTGTGAAGTCCCAGCTCTGATTCAGCTCTCCAGTACTGATACTACCTACAGTGAAATTCAGATGTCTATCGCCAGTGTTGTCCTCCTGGTGATGCCCTTGATCATTATCCTTTCCTCTTATGGTGCTATTGCTAAGGCTGTGCTGAGAATTAAGTCAACTGCAGGACAGAAGAAAGCATTTGGCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29697868 692 + 173848474 CCACAGTGATTTCATCCTTCTGGGCTTCTCTAACAAGCCA-CATTTGGAGAAGATAC-TTTTTGGATCA-TTTTTATTTTTTAT-------TTTTTGACTCTTGCAGGAAATATGGTCATAGTTCTTGTGTCCTTGAAGGATCCAAAACTCCACATGCCTATGTATTTC-TTTCTTTCCAACCTTTCCTTGGTAGACCTCTGTTTCACCAGCAGCTGTGTTCCACAGATGTTGATAAACTTCTGGGGCCCAGAAAAGACCATCAGCTACATTGGCTGTGCCATTCAACTCTATGTTTTTTTGTGGCTTGGGGCCACGGAATGTGTC---CTTGTTGTCATGGCTATGGATTGTTATGTAGCAGTGTGTCATCCACTGCAATATACCATGATCATGCACCCAAAACTT-TGTCTGCAGCTGGCTATCTTGGCATGGGGGACTGGCTTGGCCCAGTCTCTGATCCAGTCCCCTGCCACCCTCCGGTTACCCTTCTGCTCCCAGCGGATGGTGGATGATGATGTTTGTGAAGTCCCAGCTCTGATTCAGCTCTCCAGTACTGATACTACCTACAGTGAAATTCAGATGTCTATCGCCAGTGTTGTCCTCCTGGTGATGCCCTTGATCATTATCCTTTCCTCTTATGGTGCTATTGCTAAGGCTGTGCTGAGAATTAAGTCAACTGCAGGACAGAAGAAAGCATTTGGCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5488457 693 +   6154872 CCACAGTGATTTCATCCTTCT-GGCTTCTCTAACAAGCCA-CATTTGGAGAAGATAC-TTTTTGGATCA--TTTTATTTTTTAT-------TTTTTGACTCTTGCAGGAAATATGGTCATAGTTCTTGTGTCCTTGAAGGATCCAAAACTCCACATCCCTATGTATTTC-TTTCTTTCCAACCTTTCCTTGGTAGACCTCTGTTTCACTAGCAGCTGTGTTCCACAGATGTTGATTAACTTCTGGGGCCCAGAAAAGACCATCAGCTACACTGGCTGTGCCATTCAACTCTATGTTTTTTTGTGGCTTGGGGCCACGGAATGTGTCCTTCTTGTTGTCACGGCTGTGGATTGTTATGTAGCAGTGTGTCATCCACTGCAATATACCATGATCATGCACCCAAAACTT-TGTCTGCAGCTGGCTATCTTGGCATGGGGGACTGGCTTGGCCCAGTCTCTGATCCAGTCCCCTGCCACCCTCCGGTTACCCTTCTGCTCCCAGCGGATGGTGGGTGATGTTGTTTGTGAAGTCCCAGCTCTGATTCAGCTCTCCAGTACTGATACTACCTACAGTGAAATTCAGATGTCTATCGCCAGTGTTGTCCTCCTGGTGATGCCCTTGATCATTATCCTTTCCTCTTATGGTGCTATTGCTAAGGCTGTGCTGAGAATTAAGTCAACTGCAGGACAGAAGAAAGCATTTGGCAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74395065 696 + 122973662 CCACAGTGATTTCATCCTTCTGGGCTTCTCTAACAAGCCA-CATTTGGAGAAGATACTTTTTTGGATAA-TTTTATTTTTTTAT-------TTTTTGACTCTTGCAGGAAATATGGTCATAGTTCTTGTGTCCTTGAAGGATCCAAAACTCCACATCCCTATGTATTTC-TTTCTTTCCAACCTGTCCTTGGTAGACCTCTGTTTCACCAGCAGCTGTGTTCCACAGATGTTGATTAACTTCTGGGGCCCAGAAAAGACCATCAGCTACATTGGCTGTGCCATTCAACTCTATGTTTTTTTGTGGCTTGGGGCCATGGAATGTGTCCTTCTTGTTATCATGGCTGTGGATCGTTATGTAGCAGTGTGACATCCACTGCAATATACCATGATCATGCACCCAAAACTT-TGTCTGCGGCTAGCTATCTTGGCATGGGGGACTGGCTTGGCCCAGTCTCTGATCCAGTCCCCTGCCACCCTCCAGTTACCCTTCTGCTCCCAGCGGATGGTGGATGATGTTGTTTGTGAAGTCCCAGCTCTGATTCAGCTCTCCAGTACTGATACTACCTACAATGAAATTCAGATGTGTACAGCCAGTGTTATCCTCCTGGTAGTGCCCTTGATCATTATCCTTTCCTCTTATGGTGCTATTGCTAAGGCTGTGCTGAGAATTAAGTCAACTGCAGGACAGAAGAAAGCATTTGGCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29697226 696 + 172585720 CCACAGTGATTTCATCCTTCTGGGCTTCTCTAACAAGCCA-CATTTGGAGAAGATACTTTTTTGGGTCA-TTTTTATTTTTTAT-------TTTTTGACTCTTGCAGGAAATATGGTCATAGTTCTTGTGTCCTTGAAGGATCCAAAACTCCACATCCCTATGTATTTC-TTTCTTTCCAACCTTTCCTTGGTAGACCTATGTTTCACCAGCAGCTGTGTTCCACAGATGTTGATTAACTTCTGGGGCCCAGAAAAGAGCATCAGCTACATTGGCTGTGCCATTCAACTCTATGTTTTTTTGTGGCTTGGGGCCACGGAATGTGTCCTTCTTGTTGTCATGGCTGTGGATCGTTATGTAGCAGTGTGTCATCCACTGCAATATACCACGATCATGCACCGAAAACTT-TGTCTGCAGCTGGCTATCCTGGCATGGGGGACTGGCTTGGCCCAGTCTCTGATCCAGTCCCCTGCCACCCTCCTGTTACCCTTCTGCTCCCATCGGATGGTGGATGATGTCGTTTGTGAAGTCCCAGCTCTGATTCAGCTCTCCAGTACTGATACTACCTACAATGAAATTCAGATGTCTACAGCCAGTGTTATCCTCCTGGTGGTGCCCTTGATCATTATCCTTTCCTCTTACGGTGCTATTGCTAAGGCTGTGCTGAGGATTAAGTCAACTGTGGGACAGAAGAAAGCATTTGGCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29359891 696 - 170955103 CCACAGTGATTTCATCCTTCTGGGCTTCTCTAACAAGCCA-CATTTGGAGAAGATACTTTTTTGGGTCA-TTTTTATTTTTTAT-------TTTTTGACTCTTGCAGGAAATATGGTCATAGTTCTTGTGTCCTTGAAGGATCCAAAACTCCACATCCCTATGTATTTC-TTTCTTTCCAACCTTTCCTTGTTAGACCTATGTTTCACCAGCAGCTGTGTTCCACAGATGTTGATTAACTTCTGGGGCCCAGAAAAGACCATCAGCTACATTGGCTGTGCCATTCAACTCTATGTTTTTTTGTGGCTTGGGGCCACGGAATGTGTCCTTCTTGTTGTCATGGCTGTGGATCGTTATGTAGCAGTGTGTCATCCACTGCAATATACCACGATCATGCACCCAAAACTT-TGTCTGCAGCTGGCTATCCTGGCATGGGGGACTGGCTTGGCCCAGTCTCTGATCCAGTCCCCTGCCACCCTCCTGTTACCCTTCTGCTCCCATCGGATGGTGGATGATGTCGTTTGTGAAGTCCCAGCTCTGATTCAGCTCTCCAGTACTGATACTACCTACAATGAAATTCAGATGTCTACAGCCAGTGTTATCCTCCTGGTGGTGCCCTTGATCATTATCCTTTCCTCTTACGGTGCTATTGCTAAGGCTGTGCTGAGGATTAAGTCAACTGTGGGACAGAAGAAAGCATTTGGCAC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      95193 696 +    766320 CCACAGTGATTTCATCCTTCTGGGCTTCTCTAACAAGCCA-CATTTGGAGAAGATACTTTTTTGGGTCA-TTTTTATTTTTTAT-------TTTTTGACTCTTGCAGGAAATATGGTCATTGTTCTTGTGTCCTTGAAGGATCCAAAACTCCACATCCCTATGTATTTC-TTTCTTTCCAACCTTTCCTTGGTAGACCTATGTTTCACCAGCAGCTGTGTTCCACAGATGTTGATTAACTTCTGGGGCCCAGAAAAGACCATCAGCTACATTGGCTGTGCCATTCAACTCTATGTTTTTTTGTGGCTTGGGGCCACGGAATGTGTCCTTCTTGTTGTCATGGCTGTGGATCGTTATGTAGCAGTGTGTCATCCACTGCAATATACCATGATCATGCATCCAAAACTT-TGTCTGCAGCTGGCTATCCTGGCATGGGGGACTGGCTTGGCCCAGTCTCTGATCCAGTCCCCTGCCACCCTCCTGTTACCCTTCTGCTCCCATCGGATGGTGGATGATGTCGTTTGTGAAATCCCAGCTCTGATTCAGCTCTCCAGTACTGATACTACCTACAATGAAATTCAGATGTCTACAGCCAGTGTTATCCTCCTGGTGGTGCCCTTGATCATTATCCTTTCCTCTTACGGTGCTATTGCTAAGGCTGTGCTGAGGATTAAGTCAACTGTGGGACAGAAGAAAGCATTTGGCAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28616087 696 -  71996105 CCACAGTGATTTCATCCTTCTGGGCTTCTCTAACAAGCCA-CATTTGGAGAAGATACTTTTTTGGGTCA-TTTTTATTTTTTAT-------TTTTTGACTCTTGCAGGAAATATGGTCATAATTCTTGTGTCCTTGAAGGATCCAAAACTCCACATCCCTATGTATTTC-TTTCTTTCCAACCTTTCCTTGGTAGACCTATGTTTCACCAGCAGCTGTGTTCCACAGATGTTGATTAGCTTCTGGGGCCCAGAAAAGACCATCAGCTACATTGGCTGTGCCATTCAACTCTATGTTTTTTTGTGGCTTGGGGCCACAGAATGTGTCCTTCTTGTTGTCATGGCTGTGGATCGTTATGTAGCAGTGTGTCATCCACTGCAATATACCATGATCATGCACCCAAAACTT-TGTCTGCAGCTGGCTATCCTGGCATGGGGGACTGGCTTGGCCCAGTCTCTGATCCAGTCCCCTGGCACCCTCCTGTTACCCTTCTGCTCCCATCGGATGGTGGATGATGTCGTTTGTGAAGTCCCAGCTCTGATTCAGCTCTCCAGTACTGATACTACCTACAATGAAATCCAGATGTCTACAGCCAGTGTTATCCTCCTGGTGGTGCCCTTGATCATTATCCTTTCCTCTTACGGTGCTATTGCTAAGGCTGTGCTGAGGATTAAGTCAACTGTGGGACAGAAGAAAGCATTTGGCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      64133 696 -    352859 CCACAGTGATTTCATCCTTCTGGGCTTCTCTAACAAGCCA-CATTTGGAGAAGATACTTTTTTGGGTCA-TTTTTATTTTTTAT-------TTTTTGACTCTTGCAGGAAATATGGTCATTGTTCTTGTGTCCTTGAAGGATCCAAAACTCCACATCCCTATGTATTTC-TTTCTTTCCAACCTTTCCTTGGTAGACCTATGTTTCACCAGCAGCTGTGTTCCACAGATGTTGATTAACTTCTGGGGCCCAGAAAAGACCATCAGCTACATTGGCTGTGCCATTCAACTCTATGTTTTTTTGTGGCTTGGGGCCACGGAATGTGCCCTTCTTGTTGTCATGGCTGTGGATCGTTATGTAGCAGTGTGTCATCCACTGCAATATACCATGATCATGCACCCAAAACTT-TGTCTGCAACTGGCTATCCTGGCATGGGGGACTGGCTTGGCCCAGTCTCTGATCCAGTCCCCTGCCACCCTCCTGTTACCCTTCTGCTCCCATCGGATGGTGGATGATGTCATTTGTGAAGTCCCAGCTCTGATTCAGCTCTCCAGTACTGATACTACCTACAATGAAATTCAGATGTCTACAGCCAGTGTTATCCTCCTGGTGGTGCCCTTGATCATTATCCTTTCCTCTTACGGTGCTATTGCTAAGGCTGTGCTGAGGATTAAGTCAACTGTGGGACAGAAGAAAGCATTTGGCAC
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2223025 697 -   3067355 CCACAGTGATTTCATCCTTCTGGGCTTCTCTAACAAGCCA-CATTTGGAGAAGATACTTTTCTGGGTCAtttttttttttttat-------tttttAACTGTTGCAGGAAATATGGTCATAGTTCTTGTGTCCTTGAAGGATCCAAAACTCCACATCCCTATGTATTTC-TTTCTTTCCAACCTTTCCTTGGTAGACCTATGTTTCACCAGCAGCTGTGTTCCACAGATGTTGATTAACTTCTGGGGCCCAGAAAAGACCATCAGCTACATTGGCTGTGCCATTCAACTCTATGTTTTTTTGTGGCTTGGGGCCACGGAATGTGTCCTTCTTGTTGTCATGTCTGTGGATCGTTATGTAGCAGTGTGTTATCCACTGCAATATACCATGATCATGCACCCAAAACTT-TGTCTGCAGCTGGCTATCCTGGCATGGGGGACTGGCTTGGCCCAGTCTCTGATCCAGTCCCCTGCCACCCTCCAGTTACCCTTCTGCTCCCATCGGATGGTGGATGATGTCGTTTGTGAAGTCCCAGCTCTGATTCAGCTCTCCAGTACTGATACTACCTACAATGAAATTCAGATGTCTACAGCCAGTGTTATCCTCCTGGTGGTGCCCTTGATCATTATCCTTTCCTCTTACGGTGCTATTGCTAAGGCTGTGCTGAGGATTAAGTCAACTGTGGGACAGAAGAAAGCATTTGGCAC
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35            26203403 700 +  26524999 CCCTGGGGGCTTCCTCCTTCTGGACTTCTCTGAACACCCA-GGGCTAGAGAGAATCCTTTTTGTGGTTG-TCCTCACTTCCTGTTGTGTTGTTCCTCACTCTGGTGAGCAACACCCTCATCATCCTGCTGTCTGTGCGGGACCCAAGGCTCCACTCCTCGATGTACTTT-TTCCTCTCCAACCTGTCCTTCTTGGACCTGCGCTTCACCACAAGCTCCGTCCCCCAGCTGCTGGTCAACCTCTGCAGCCC---AAAGACCACCAGCTTCCTTGGCTGCTCTGTTCAGCTCTTCATCTTTCTGTTCCTGGGGACCACAGAGTGCATCCACCTGAACATGATGGCCTTTGACCTCTACATGGCCATATGCCAGCCTCTGCACTATACCATCATCATGCCCCCGTTGCCTGTGCCGGCAGCTGGCGTCCATGGCCTGGGCCATCAGTCTGCTGGAGTCGGTGGTCCAGACACCACCCACTCTCCACCTGCCCTTGTGTCCCCACCAGCAGGGGGATGAGTTCGTGTGTGAGGTCCCAGCT-TAATCAGACTGTCTGGTGGGGACACCACCTACAACCAGATCCAGATGGCTGTCACCAGCATCCTCATCCTGCTCATGCCCATCGGCCTCATCCTGGTCTCTTACTGTGCCATTGCCCAGGCAGTGCTGAGGATTAACTCAGCCAACCGGTGGAGGAAAGCATGTGGGAC
i canFam3.chr35            I 64429 C 0
s dasNov3.JH570037           368801 696 -    859332 CCACAGTGATTTCATCCTCTTGGGCTT-TCCGACAAGCCATTTTTTGGAGAAGATACTTTTTTGGGTTA-TTCTGACCTTTTAT-------TGCTTGACTTTTATGGGAAATATGTTCATTATTCTTGTCTCCTCCAAGTATCCAAAACTGCACATCCCTATGTATTTCTTTTCTTTCCAACATTTCCTTGCTAGAGCTCTGTTTCATCAGCAGCTGTGTCCTACAGATGCTGCTTAATCTCTGGGGTCCAGAGAAGACCATCAGCTACACAGGTTGTGCCATTCAACTCTATGCATTCACATGGTTTGAGGCCACTGAATGTGTCCTTCTAGTGGTCATGGCTGTGGACCGCTATGTGTCAGTGTGTCACCGTCTGCAGTATACTACTATCATGTGCCTTAAACTT-TGTCTACAGCTGGCCATCCTGGAATGGGGGGTTGGCCTGCTTCAGTCTTCGATCCAGTCTCCTGCCACACTCAAGCTACCCTTCTGCTGCTACTGGAGGGTGGA-GACATTGTCTGTCAAGTCCCAGGCCTGATTCAGCTCCCTAGTGCAGACACCACCTACAGTGAGGTCCAGATGTCCATAGCCAGTGCTGTTCTCCTGGTGGTGCCCTTGATCATCATCCTCTCCTCTTACGCTGTTATTGTGAAGGCTGTGCTGAGTATAAAGTCAACCGCAGGGCGGAAGAAAGCACTGGGCAC
i dasNov3.JH570037         C 0 N 0

a score=1190936.000000
s hg38.chr6_GL000254v2_alt   481702 226 +   4827813 CTGCATCTCTCACCTTCTTGTGGTTTCTCTCTTTTATGGCACTGTCACAGGTGTCTACCTTCAACCAAAAAATCACTATCCTCATGAATGGGGCAAATTTCTCACTCTTTTCTACACTGTAGTAACCCCAACTCTTAATCCCCTCATCTACACTCTAAGGAACAAGGAGGTAAAGGGAGCACTAATAAGATTGGGGAGGAGGACCTGGGATTCCCAGAATAACTAA
s panTro5.chr6             29462788 224 + 175400573 CTGCATCTCTCACCTTCTTGTGGTTTCTCTCTTTTATGGCACTGTCACAGGTGTCTACCTTCAACCAAAAAATCACTATCCTCATGAATGGGGCAAATTTCT--CTCTTTTCTACACTGTAGTAACCCCAACTCTTAATCCCCTCATCTCCACTCTAAGGAACAAGGAGGTAAAGGGAGCACTAATAAGATTGGGGAGGAGGACCTGGGATTCCCAGAATAACTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29698560 226 + 173848474 CTGCATCTCTCACCTTCTTGTGGTTTCTCTCTTTTATGGCACTGTCACAGGTGTCTACCTTCAACCAAAAAATCACTATCCTCATGAATGGGGCAAATTTCTCACTCTTTTCTACACTGTAGTAACCCCAACTCTTAATCCCCTCATCTCCACTCTAAGGAACAAGGAGGTAAAGGGAGCACTAATAAGATTTGGGAGGAGGACCTGGGATTCCCAGAATAACTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5489150 226 +   6154872 CTGCATCTCTCACCGTCTTGTGGTTTCTCTCTTTTATGGCACTGTCACAAGTGTCTACCTTCAACCAAAAAATCACTATCCTCATGAATGGGGCAAATTTCTCACTCTTTTCTACACTGTAGTAACCCCAACTCTTAATCCCCTCATCTACACTCTATGGAACAAGGAGGTAAAGGGAGCACTAATAAGATTGGGGAGGAGGACCTGGGATTCCCAGAATAACTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74395761 226 + 122973662 CTGCATCTCTCATCTTCTTGTGGTTTCTCTCTTTTATGGCACTGTCACAGGTGTCTACCTTCGACCAAAAAATCACTATGCTCATGAATGGGGCAAATTTCTCACTCTTTTCTACACTGTAGTAACCCCAACTCTTAATCCCCTCATCTACACTCTAAGGAACAAGGAGGTAAAGGGAGCACTAATAAGATTGGGGAGGAGGACCTGGGATTCCCAGAATAACTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29697922 226 + 172585720 CTGCACCTCTCACCTTCTTGTGGTTTCTCTCTTTTATGGCACTGTCACAGGTGTCTACCTTCAACCAAAAATTCACTATGCTCATGAATGGGGTAAATTTCTCACTCTTTTCTACACTGTGGTAACCCCAACTCTTAATCCCCTCATCTACACTCTAAGGAACAAGGAGGTAAAGGGAGCACTAATAAGATTGGGGAGGAGGACCTGGGATTCCTAGAATAACTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29360587 226 - 170955103 CTGCACCTCTCACCTTCTTGTGGTTTCTCTCTTTTATGGAACTGTCACAGGTGTCTACCTTCAACCAAAAAATCACTATTCTCATGAATGGGGTAAATTTCTCACTCTTTTCTACACTGTGGTAACCCCAACTCTTAATCCCCTCATCTACACTCTAAGGAACAAGGAGGTAAAGGGAGCACTGATAAGATTGGGGAGGAGGACCTGGGATTCCCAGAATAACTAA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      95889 226 +    766320 CTGCACCTCTCACCTTCTTGTGGTTTCTCTCTTTTATGGCACTGTCACAGGTGTCTACCTTCAACCAAAAAATCACTATTCTCATGAATGGGGTAAATTTCTCACTCTTTTCTACACTGTGGTAACCCCAACTCTTAATCCCCTTATCTACACTCTAAGGAACAAGGAGGTAAAGGGAGCACTGATAAGATTGGGGAGGAGGACCTGGGATTCCCAGAATAACTAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28616783 224 -  71996105 CTGCACCTCTCACCTTCTTGTGGTTTCTCTCTTTTATGGCACTGTCACAGGTGTCTACCTTCAACCAAAAAATCACTATGCTCATGAATGGGGTAAATTTCTCACTC--TTCTACACTGTGGTAACCCCAACTCTTAATCCCCTCATCTACACTCTAAGGAACAAGGAGGTAAAGGGAGCACTGATAAGATTGGGGAGGAGGACCTGGGGTTCCCAGAATAACTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      64829 226 -    352859 CTGCACCTCTCACCTTCTTGTGGTTTCTCTCTTTTATGGCACTGTCACAGGTGTCTACCTTCAACCAAAAAATCACTATTCTCATGAATGGGGTAAATTTCTCACTCTTTTCTACACTGTGGTAACCCCAACTCTTAATCCCCTCATCTACACTCTAAGGAACAAGGAGGTAAAGGGAGCACTGATAAGATTGGGGAGGAGGACCTGGGATTCCCAGAATAACTAA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2223722 226 -   3067355 CTGCACCTCTCACCTTCTTGTGGTTTCTGTCTTTTATGGCACTGTCACAGGTGTCTACCTTCAACCAAAAAATCACTATGCTCATGAATGGGGTAAATTTCTCACTCTTTTCTACACTGTGGTAACCCCAACTCTTAATCCCCTCATCTATACTCTAAGGAACAAGGAGGTAAAGGGAGCACTAATAAGATTGGGGAGGAGGACCTGGGATTCCCAGAATAACTAA
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35            26204103 224 +  26524999 CTGCTTCTCCCCTCTCGTGGTGGTCACCCTCTTCTACAGATCAGCCATCGCTGTCTACCTCCAGCCCCAGAATGCCTATGCCCAGAAAGGGGCATAGTTCTTCTGTCTGTTCTGTGCCGTGGGCACTGCAGCAATGAA--CCCTCATTTACACCCTGAAAACCAAGGAGGTAAAGAGGGCTGTCAGAAGGTCGCTGGGGAAAGACAGGGATACATGGGAGAGCTGA
i canFam3.chr35            C 0 T 64688

a score=9676086.000000
s hg38.chr6_GL000254v2_alt   481928 2061 +   4827813 CAAGGTTAACATATGTTTACCT-TTGCTTAACCTAAGAATAGAGAACAACCTCATCACAAAAAGCTGGAGATACACCTCCTAAGCCAAAAGTAGGAGAGAAAGAGCTGCATTCTGTTCAGGTTGAGATTTCAGTTTCCTTCATCAATCA---ATTGGGCCCTTAAATTCTTCATATTGTGGATTTAGACACAGTATGGTATAAAAATTAATATATTTAATAGCTATTGTCTTGAAAAGGACACAATGCAATTGAAT-GGGGGAGGAGGAGAAGACACAAGAAACACATTACTTGCAAAATAAAATACTAAGTAGTACGTTTCATGCCTTTCTATTTCGTTCTTTTTTTGTTCTATTTTCCTACAAGCTCCACCAGTGCTTTCAGTCCCAACAAGATTTCTAAAGTTTTGAGACAGAAACTTCTTGATCAACTTATATGTACCCCTATACTGTAATATGGCAGGTCTTGGTTTTAATTGCTTCTGTCTC---TCTGTCTCAGCATGACCACTGTTGACCTGTAATGTGACTTTCACTATCCAATGCAAAGTGTTTGCCATGCCAAAGTCCACATTTACTGCTCTCTGGTGCTGATACTATGAT--GAGTGTGTGTGCAAGTTTCTCAGTTTGAGCCTTGATATTCTGGGCCCCCAGTTATAGGAATAGACTTCTGTGTTTTTCTTCATTCTGAGGCCTTATTGTAACAAAATGGTTATCTTTTTATCAGACCCAATTATTCTTTCACTTTATAGATATTTATGGCTTTCCTATTATATACCTATTATGTTTCAGATGGTAGTTATGTAATAGTAGATAAAACATATAAAATAATCAACATCGTGGAACTTATAacaatatcatctcttgctcttagactctttcacagtattgatataatattagatttgcctcattacaaaacccatttgtttattgctttactcttagctattatttgtcttctccatttacaaccaaactttttcaattttggaaggaatattaggttcagccactgtgttgcttcagattgcagctaacaacactggtctagcaagtgcttccccctcagttcactcctgttcagaGACAGtgacaatgtgatagaaaataaaaacccattttctgaggagaaattcaagcaggctgcagaaatttgcataagtaagaaggagccaaatgttaatcaccaagacaatggggaaaatgtctccagggcatgtcagaggtcttcacagcagcccctcccatcacaggcccagaggcctaggagggagaaacagtttcctgggccaagcccagagcccccctgctctatgcagccttgggacatggtgcccggtgtcttatctgcttcagctccatccttggctaaaagaggccaaggtacagaccgcttcagagagtgcaagccccaagcattggcagcttccacatggtgttggtcctgtgggtgtgcagaagacaagaactgagctttgagaacctccgcctagatttcagaggatgtattgatgtgcctggatgtccaggaagaagtttgctgggttggcaagagccctcatggagaatctctgctagggcagtgcagaagaaaaatgtggtgttgga-gcccttacacagagtacccactggggcactgcctggtggagctgtgagaagagggtcaccatcctccagactccagaatgatagacccactgacagcttgcactgtgtgcctggaaaagctggagacactcaatgccagcctgtgaaagcagccaggaggggagcaaagccacaaggatggagttgcccaaggccatgggagcccacctcttgcatcagcttgacctagatttgagacatggagtcaaaagagatcatttatgagctttaagaattgactgccctgctggatttcggacatgcatgggtcctgcaacacctttgttttggccaatttctcccatctggaatgggtgtatttacccaatgctgtactcccattgtatctaggaagtaactaacttgcttttgattttacaggcttataaccagaagggacttgccttgtctcagatgaga
s panTro5.chr6             29463012 2061 + 175400573 CAAGGTTAACATATGTTTACCT-TTGCTTAACCTAAGAATAGAGAACAACCTCATCACAAAAAGCTGGAGATACACCTCCTAAGCCAAAAGTAGGAGAGAAAGAGCTGCATTCTGTTCAGGTTGAGATTTCAGTTTCCTTCATCAATCA---ATTGGGCCCTTAAATTCTTCATATTGCGGATTTAGACACAGTATGGTATAAAAATTAATATATTTAATAGCTATTGTCTTGAAAAGGACACAATGCAATTGAAT-GGGGGTGGAGGAGAAGACACAAGAAACACATTACTTGCAAAATAAAATACTAAGTAGTACATTTCATGCCTTTCTATTTCGTTCTTTTTTTGTTCTATTTTCCTACAAGCTCCACCAGTGCTTTCAGTCCCAACAAGATTTCTAACGTTTTGAGACAGAAACTTCTTGATCAACTTATATGTACCCCTATACTGTAATATGGCAGGTCTTGGTTTTAATTGCTTCTGTCTC---TCTGTCTCAGCATGACCACTGTTGACATGTAATGTGACTTTCACTATCCAATGCAAAGTGTTTGCCATGCCAAAGTCCACATTTACTGCTCTCTGGTGCTGATACTATGAT--GAGTGTGTGTGCAAGTTTCTCAGTTTGAGCCTTGATATTCTGGGCCCCCAGTTATAGGAATAGACTTCTGTGTTTTTCTTCATTCTGAGGCCTTATTGTAACAAAATGGCTATCTTTTTATCAGACCCAATTATTCTTTCATTTTATAGATATTTATGGCTTTCCTATTATATACCTATTATGTTTCAGATGGTAGTTATATAATAGTAGATAAAACATATAAAATAATCAACATCGTGGAACTTATAacaatatcatctcttgctcttagactctttcacagtattgatataatattagatttccctcattacaaaacccatttgtttattgctttactcttagctattatttctcttctccatttacaaccaaactttttcaattttggaaggaatattaggttcagccactgtgttgcttcagattgtagctaacaacactggtctagcaagtgcttccccctcagttcactcctgttcagaGACAGtgacaatgtgatagaaaataaaaacccattttctgaggagaaattcaagcaggctgcagaaatttgcataagtaagaaggagccaaatattaatcaccaagacaatggggaaaatgtctccagggcatgtcagaggtcttcacagcagcccctcccatcacaggcccagaggcctaggagggagaaacggtttcctgggccaagcccagagcccccctgctctatgcagccttgggacatggtgcccggtgtcttatctgcttcagctccatccttggctaaaagaggccaaggtacagaccgcttcagagagtgcaagccccaagcattggcagcttccacgtggtgttggtcctgtgggtgtgcagaagacaagaattgagctttgagaacctccgcctagatttcagaggatgtattgacgtgccgggatgtccaggaagaagtttgctgggttggcaagagccctcatggagaatctctgctagggcagtgcagaagcaaaatgtggtgttgga-gcccttacacagagtacccactggggcactgcctggtggagctgtgagaagagggtcaccatcctccagactccagaatgatagacccactgacagcttgcactgtgtgcctggaaaagctggagacactcaatgccagcctgtgaaagcagccaggaggggagcaaagccacagggatggagttgcccaaggccatgggagcccacctcttgcatcagcttgacctagatttgagacatggagtcaaaagagatcatttatgagctttaagaattgactgccctgctggatttcggacatgcatgggtcctgcaacaccttcgttttggccaatttctcccatctggaatgggtgtatttacccaatgctgtactcccattgtatctaggaagtaactaacttgcttttgattttacaggcttataaccagaagggacttgccttgtctcagatgaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29698786 2061 + 173848474 CAAGGTTAACATATGTTTACCT-TTGCTTAACCTAAGAATAGAGAACAACCTCATCACAAAAAGCTGGAGATACACCTCCTAAGCCAAAAGTAGGAGAGAAACAGCTGCATTCTGTTCAGGTTGAGATTTCAGTTTCCTTCATCAATCA---ATTGGGCCCTTAAATTCTTCATATTGCAGATTTAGACACAGTATGGTATAAAAATTAATATATTTAATAGCTATTGTCTTGAAAAGGACACAATGCAATTGAAT-GGGGGTGGAGGAGAAGACACAAGAAACACATTACTTGCAAAATAAAATACTAAGTAGTACATTTCATGCCTTTCTATTTCGTTCTTTTTTTGTTCTATTTTCCTACAAGCTCCACCAGTGCTTTCAGTCCCAACAAGATTTCTAACGTTTTGAGACAGAAACTTCTTGATCAACTTATATGTACCCCTATACTGTAATATGGCAGGTCTTGGTTTTAATTGCTTCTGTCTC---TCTGTCTCAGCATGACCACTGTTGACATGTAATGTGACTTTCACTATCCAATGCAAAGTGTTTGCCATGCCAAAGTCCACATTTACTGCTCTCTGGTGCTGATACTATGAT--GAGTGTGTGTGCAAGTTTCTCAGTTTGAGCCTTGATATTCTGGGCCCCCAGTTATAGGAATAGACTTCTGTGTTTTTCTTCATTCTGAGGCCTTATTGTAACAAAATGGCTATCTTTTTATCAGACCCAATTATTCTTTCATTTTATAGATATTTATGGCTTTCCTATTATATACCTATTATGTTTCAGATGGTAGTTATATAATAGTAGATAAAACATATAAAATAATCAACATCGTGGAACTTATAacaatatcatctcttgctcttagactctttcacagtattgatataatattagatttccctcattacaaaacccatttgtttattgctttactcttagctattatttctcttctccatttacaaccaaactttttcaattttggaaggaatattaggttcagccactgtgttgcttcagattgcagctaacaacactggtctagcaagtgcttccccctcagttcactcctgttcagaGACAGtgacaatgtgatagaaaataaaaacccattttctgaggagaaattcaagcaggctgcagaaatttgcataagtaagaaggagccaaatattaatcactaagacaatggggaaaatgtctccagggcatgtcagaggtcttcacagcagcccctcccatcacaggcccagaggcctaggagggagaaacggtttcctgggccaagcccagagcccccctgctctatgcagccttgggacatggtgcccggtgtcttatctgcttcagctccatccttggctaaaagaggccaaggtacagaccgcttcagagagtgcaagccccaagcattggcagcttccacgtggtgttggtcctgtgggtgtgcagaagacaagaattgagctttgagaacctctgcctagatttcagaggatgtattgacgtgccgggatgtccaggaagaagtttgctgggttggcaagagccctcatggagaatctctgctagggcagtgcagaagcaaaatgtggtgttgga-gcccttacacagagtacccactggggcactgcctggtggagctgtgagaagagggtcaccatcctccagactccagaatgatagacccactgacagcttgcactgtgtgcctggaaaagctggagacactcaatgccagcctgtgaaagcagccaggaggggagcaaagccacagggatggagttgcccaaggccatgggagcccacctcttgcatcagcttgacctagatttgagacatggagtcaaaagagatcatttatgagctttaagaattgactgccctgctggatttcggacatgcctgggtcctgcaacaccttcgttttggccaatttctcccatctggaatgggtgtatttacccaatgctgtactcccgttgtatctaggaagtaactaacttgcttttgattttacaggcttataaccagaagggacttgccttgtctcagatgaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5489376 2063 +   6154872 CAAGGTTAACATATGTTTACCT-TTGCTTAACCTAAGAATAGAGAACAACCTCATCACAAAAAGCTGGAGATACACCTCCTAAGCCAAAAGTAGGAGAGAAAGAGCTGCATTCTGTTCAGGTTGAGATTTCAGTTTCCTTCATCAATCA---ATTGGGCCCTTAAATTCTTCATATTGTGGATTTAGACACAGTATGGTATAAAAATTAATATATTTAATAGCTATTGTCTTGAAAAGGACACAATGCAATTGAAT-GGGGGAGGAGGAGAAGACACAAGAAACACATTACTTGCAAAATAAAATACTAAGTAGTACGTTTCATGCCTTTCTATTTCGTTCTTTTTTTGTTCTATTTTCCTACAAGCTCCACCAGTGCTTTCAGTCCCAACAAGATTTCTAAAGTTTTGAGACAGAAACTTCTTGATCAACTTATATGTACCCCTATACTGTAATATGGCAGGTCTTGGTTTTAATTGCTTCTGTCTCTCTTCTGTCTCAGCATGACCACTGTTGACGTGTAATGTGACTTTCACTATCCAATGCAAAGTGTTTGCCATGCCAAAGTCCACATTTACTGCTCTCTGGTGCTGATACTATGAT--GAGTGTGTGTGCAAGTTTCTCAGTTTGAGCCTTGATATTCTGGGCCCCCAGTTATAGGAATAGACTTCTGTGTTTTTCTTCATTCTGAGGCCTTATTGTAACAAAATGGCTATC-TTTTATCAGACCCAATTATTCTTTCATTTTATAGATATTTATGGTTTTCCTATTATATACCTATTATGTTTCAGATGGTAGTTATATAATAGTAGATAAAACATATAAAATAATCAACATCGTGGAACTTATAacaatatcatctcttgctcttagactctttcacagtattgatataatattagatttgcctcattacaaaacccatttgtttattgctttactcttagctattatttctcttctccatttacaaccaaactttttcaattttggaaggaatattaggttcagccactgtgttgcttcagattgcagctaacaacactggtctagcaagtgcttccccctcagttcactcctgttcagaGACAGtgacaatgtgatagaaaataaaaacccattttctgaggagaaattcaagcaggctgcagaaatttgcataagtaagaaggagccaaatgttaatcaccaagacaatggggaaaatgtctccagggcatgtcagaggtcttcacagcagcccctcccatcacaggcccagaggcctaggagggagaaacggtttcctgggccaagcccagagcccccctgctctatgcagccttgggacatggtgcccggtgtcttatctgcttcagctccatccttggctaaaagaggccaaggtacagaccgtttcagagagtgcaagccccaagcattggcagcttccacatggtgttggtcctgtgggtgtgcagaagacaagaactgagctttgagaacctccgcctagatttcagaggatgtattgacgtgcctggatgtccaggaagaagtttgctgggttggcaagagccctcatggagaatctctgctagggcagtgcagaagaaaaatgtggtgttgga-gcccttacacagagtacccactggggcactgcctggtggagctgtgagaagagggtcaccatcctccagactccagaatgatagacccactgacagcttgcactgtgtgcctggaaaagctggagacactcaatgccagcctgtgaaagcagccaggaggggagcaaagccacagggatggagttgcccaaggccatgggagcccacctcttgcatcagcttgacctagatttgagacatggagtcaaaagagatcatttatgagctttaagaattgactgccctgctggatttcggacatgcatgggtcctgcaacacctttgttttggccaatttctcccatctggaatgggtgtatttacccaatgctgtactcccattgtatctaggaagtaactaacttgcttttgattttacaggcttataaccagaagggacttgccttgtctcagatgaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74395987 2056 + 122973662 CAAGGTTAACATATGTTTACCTATTGCTTAACCTGAGAATAGAGAACAACCTCATCACAAAAAGCTGGAGATACACCTCCTAAGCCAAAAGTAGGACAGAAAGAGCTGCATTCTGTTCAGGTTGAGATTTCAGTTCCCTTCATCAATCA---ATTGGGCCCTTAAATTCTTCATATTGTGGATTTAGACACAGTATGGTATAAAAATTAATATATTTAATAGCTATTGTCTTGAAAAGGACACAATGCAATTGAATGGGGGGGGGAGGAGAAGACACAAGAACCACATTATTTGCAAAATAAAATGCCAAGTAGTACGTTTCATGCCTTTCTATTTCGTTCTTTTTTTGTTCTATTTTCCTACAAGCATCACCAGTGCTTTCAGTACCAACAAGATTTGTAAAGTTTTGAGACAGAAACTTCTCGATTAACTTATATGTACCCCTATACTGTAATCTGGCAGGTCTTGGTTTTAATTGCTTCTGTGTC---TCTGTCTCAGCATGACCACTGTTGACGTGTAATGTGACTTTCACTATCCAATGCAAAGTGTTTGCCATGCCGAAGTCCACATTTACTGCTCTCTGATGCTGATACTATGATAAGAGTGTGTGTGCAAGTTTCTCAGTTTGAGCCTTGATATTCTGGGCCCCCAGTTATAGGAATAGACTTCTGTGTTTTTCTTCATTCTGAGGCCTTATTATAAC-AAATGGCT----TTTTATCAGACCCAATTATTCTTTCATTTTACAGATATTTCTGGCTTTCCTATTGTACACCTATTATGTTTTAGATGGTAGTTATATAATACTAGATAAAACATATATAATAATCAACATTGTGGAACTTATAacaatatcatctcttactcttagactctttcacagtattgatataatattagatttccctcattacaaaacccatttgtttattgctttactcttagctattatttctcttctccatttacaaccgaactttttcaattttggaaggaacataaggttcagccactgtgttgcttcagattgcagctaacaacactggtctagcaagtgcttccccctcagttcactcctgttcagaCACAGtgacaatgtgatagaaaataaaaacccattttctgaggagaaattcaagcaggctgcagaaatttgcataagtaaggaggagccaaatattaatcaccaagacaatggggaaaatgcctccagggcatgtcagaggtcttcacagcagcccctcccatcacaggcccagaggcccaggagggagaaacggtttcctgggccaagcccagggcccccctgctctgtgcagccttgggacatggtaccctgtgtcttatctgcttcagctccatccttagctaaaaga-cccaacgtacaaactgcttcagagagtgcaagccccaagcactggcagcttccacatggtgttggtcttgtgggtgtgcagaagacaagaattgagctttgagaacctccgcctagatttcagacgatgtattgacgtgcctggatgtccaggaagaagtttgctgagttggcaagagccctcatggagaatctctgctagggcagtgcagaagaaaaat---gtgttgga-gcccttacacagagtacccactggggcactgcctggtggagctgtgagaagagggtcaccatcctccagactccagaatggtagacccactgacagcttgcactgtgtgcctggaaaagctgaagacactcaacgccagcctgtgaaagtagccaggaggggagcaaagccacagggatagagttgcccaaggccatgggagcccacctcttgcatcagcttgacctagatttgagacatggagtcaaaagagatcatttatgagctttaagaattgactgccctgctggattttggacatgcgtggggcctgcaacatctttgttttggccaatttctcccatctggaatgggtgtatttacccaatgctgtactctcattgtatctaggaagtaactaacttgcttttgattttacaggcttataaacagaagggacttgccttgtctcagatgaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29698148 2015 + 172585720 CAAGGTT-----------------------------------------ACTCCATCACAAAAAGCTGGAGATACACCTCCTAAGCCAAAAGTAGGAGAGAAAAAGCTGCATTCTGTTCAGGTTGAGATTTCAGTTCCCTTTATCAGTCATTCATTGGG-CCTTAAATTCTTCATATTGTGGATTTAGACACAGTATGGTATAGAAATTAATATACTTAATAGCTATTGTCTTGAAAAGGACACAATGCAATTGAAT-GGGAGAGGAGGAGAAGACACAAGAAACACATTACTTGCAAAATAAAATACCAAGTAGTACATTTCATGCCTTTTTATTTCATTCTTTTTTTGTTCTATTTTCCTACAAGCTTCACCAGTGCTTTCAGTCACAAGAAGATTTCTAAAGTTTTGAGACAGAAACTTCTTGAGCAACGTATATGTACCCCTATACTGTAATCTGGCAGGTCTTGGTTTTAATTGC-TGTGTCTC---TCTGTCTCAACATCACCACTGTTGACATTTAATGTGCCTTTCACTATCCAATGCAAAGCATTTGCCATGCCAAAGTCCACATTTACTGCTCTCTGGTGCTGTTACCAAGGTAAGAGTGTATGTGCAAGTTTCTCAATTTGAGCCTTGATATTCTGGGCCCCCAGTTACAGGAATAGACTTATG-ATTCTTCTTCATTCTGAGGCCTTATTGTAACAAAATGGCTATCTTTTTATCAGACCCAATTATTCTTTCATCTTATAGATATTTATGGCTTTCCTATTATATACCTATTACATTTTAGATGGTAGTTATATAATAGTAGATAAAACATATAAAATAATCAACATCATGAAACTTATAacaataccatctcttgctcttagactctttcacagtattgatgtaatattagatttccctcattacaaaacccatttgtttattgctttgctcttagctattatttctgttctccatttacaaccaaactttttcaactttggaagtaacattaggttcagccactgtgttgcttcacactgcagctaaaaacactggtctagcaagggcttccccctcagttcactcctgctcagaCAGAGtgacaatgtgatagaaaagaaaaacccattttcagagaagaaattcaagcaggctgcagaaatttgcataagtaaggaggagccaaatgttaatcaccaagacaatggggaaaatgtctccagggcatgtcagaggtcttcacagcagccccttccatcacaggcccagaggcgtaggaggaagaaatggtttcctaggccaagtccaggacccccctgctctatacagccttggtgcatggtgccctgtgtctcagctgcttcagccccatccttggctaaaagaggccaaggtacagattgcttcagagagtgcaagccccaagcattggcagcttccacgtggtgttggtcctgtgggtgtgcagaagacaagaattgagctttaagaacctccacctagatttcagaggatgtattgatatgcttggatgtccaggaagaagtttgctgggttggtaagagcccttatggagaatctctgctagagcagtgcagaagaaaaatgtggtgttgga-gcccccccacagagtacccactggggcactgcctggtggagctgt--------ggtcaccatcttccagactccagaatggtagatccatcgacagcttgcactgtgtgcctggaaaagctgcagacactcaatgccagcctgtgaaagcagccagtaggggagcaaagccacagggatggagttgcccaaggccatgggagcccacctcttgcatcagcttgacctagatttgagacgtggagtcaaaagagatcatttctgagttttgagaattgactgccctgctggattttggacttgcatggggcctgcaacccctttgttttggccaatttctcccatctggaatgggtgtatttacccagtgctgtacttccattgtatctaggaagtaactaacttgcttttgattttacaggcttataaacagaaggaatttgccttgtctcagatgaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29360813 2015 - 170955103 CAAGGTT-----------------------------------------ACCCCATCACAAAAAGCTGGAGATACACCTCCTAAGCCAAAAGTAGGAGAGAAAAAGCTGCATTCTGTTCAGGTTGAGATTTCAGTTCCCTTTATCAATCATTCATTGGG-CCTTAAATTCTTCATATTGTGGATTTAGACACAGTATGGTATAGAAATTAATATACTTAATAGCTATTGTCTTGAAAAGGACACAATGCAATTGAAT-GGGAGAGGAGGAGAAGACACAAGAAACACATTACTTGCAAAATAAAATACCAAGTAGTACATTTCATGCCTTTTTATTTCATTCTTTTTTTGTTCTATTTTCCTACAAGCTTCACCAGTGCTTTCAGTCACAAGAAGATTTCTAAAGTTTTGAGACAGAAACTTCTTGAGCAACGTATATGTACCCCTATACTGTAATCTGGCAGGTCTTGGTTTTAATTGC-TGTGTCTC---TCTGTCTCAGCATCACCACTGTTGACGTGTAATGTGCCTTTCACTATCCAATGCAAAGCATTTGCCATGCCAAAGTCCACATTTACTGCTCTCTGGTGCTGTTACCAAGGTAAGAGTGTATGTGCAAGTTTCTCAATTTGAGCCTTGATATTCTGGGCCCCCAGTTACAGGAATAGACTTATG-ATTCTTCTTCATTCTGAGGCCTTATTGTAACAAAATGGCTATCTTTTTATCAGACCCAATTattctttcatcttatagatatttatggctttcctattatatacctattacattttagatggtagttatataatagtagataaaacatataaaaTAATCAACATCTTGAAACTTATAacaataccatctcttgctcttagactctttcacagtattgatgtaatattagatttccctcattacaaaacccatttgtttattgctttgctcttagctattatttctgttctccatttacaaccaaactttttcaactttggaagtaacattaggttcagccactgtgttgcttcacactgcagctaacaacactggtctagcaagtgcttccccctcagttcactcctgctcagaCAGAGtgacaatgtgatagaaaagaaaaacccattttcagagaagaaattcaagcaggctgcagaaatttgcataagtaaggaggagccaaatgttaatcaccaagacaatggggaaaatgtctccagggcatgtcagaggtcttcacagcagccccttccatcacaggcccagaggcctaggaggaagaaatggtttcctaggccaagtccaggacccccctgctctatacagccttggtgcatggtgccctgtgtctcagctgcttcagccccatccttggctaaaagaggccaaggtacagattgcttcagagagtgcaagccccaagcattggcagcttccacgtggtgttggtcctgtgggtgtgcagaagacaagaattgagctttaagaacctccacctagatttcagaggatgtattgatatgcttggatgtccaggaagaagtttgctgggttagcaagagcccttatggagaatctctgctagggtagtgcagaagaaaaatgtggtgttgga-gcccccccacagagtacccactggggcactgcctggtggagctgt--------ggtcaccatcttccagactccagaatggtagatccactgacagcttgcactgtgtgcctggaaaagctgcagacactcaatgccagcctgtgaaagcagccagtaggggagcaaagccacagggatggagttgcccaaggccatgggagcccacctcttgcatcagcttgacctagatttgagacgtggagtcaaaagagatcatttttgagttttgagaattgactgccctgctggatttcggacttgcatggggcctgcaacccctttgttttggccaatttctcccatctggaatgggtgtatttacccagtgctgtacttccattgtatctaggaagtaactaacttgcttttgattttacaggcttataaacagaaggaatttgccttgtctcagatgaga
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      96115 2015 +    766320 CAAGGTT-----------------------------------------ACCCCATCACAAAAAGCTGGAGATACACCTCCTAAGCCAAAAGTAGGAGAGAAAAAGCTGCATTCTGTTCAGGTTGAGATTTCAGTTCCCTTTATCAATCATTCATTGGG-CCTTAAATTCTTCATATTGTGGATTTAGACACAGTATGGTATATAAATTAATATACTTAATAGCTATTGTCTTGAAAAGGACACAATGCAATTGAAT-GGGAGAGGAGGAGAAGACACAAGAAACACATTACTTGCAAAATAAAATACCAAGTAGTACATTTCATGCCTTTTTATTTCATTCTTTTTTTGTTCTATTTTCCTACAAGCTTCACCAGTGCTTTCAGTCACAAGAAGATTTCTAAAGTTTTGAGACAGAAACTTCTTGAGCAACGTATATGTACCCCTATACTGTAATCTGGCAGGTGTTGGTTTTAATTGC-TGTGTCTC---TCTGTCTCAGCATCACCACTGTTGACGTGTAATGTGCCTTTCACTATCCAATGCAAAGCATTTGCCATGCCAAAGTCCACATTTACTGCTCTCTGGTGCTGTTACCAAGGTAAGAGTGTATGTGCAAGTTTCTCAATTTGAGCCTTGATATTCTGGGCCCCCAGTTACAGGAATAGACTTATG-ATTCTTCTTCATTCTGAGGCCTTATTGTAACAAAATGGCTATCTTTTTATCAGACCCAATTATTCTTTCATCTTATAGATATTTATGGCTTTCCTATTATATACCTATTATAGTTTAGATGGTAGTTATATAATAGTAGATAAAACATATAAAATAATCAACATCATGAAACTTATAacaataccatctcttgctcttagactctttcacagtattgatgtaatattagatttccctcattacaaaacccatttgtttattgctttgctcttagctattatttctgttctccatttacaaccaaactttttcaactttggaagtaacattaggttcagccactgtgttgcttcacactgcagctaacaacactggtctagcaagtgcttccccctcagttcactcctgctcagacagagtgacaatgtgatagaaaagaaaaacccattttcagagaagaaattcaagcaggctgcagaaatttgcataagtaaggaggagccaaatgttaatcaccaagacaatggggaaaatgtctccagggcatgtcagaggtcttcacagcagccccttccatcacaggcccagaggcctaggaggaagaaatggtttcctaggccaagtccaggacccccctgctctatatagccttggtgcatggtgccctgtgtctcagctgcttcagccccatccttggctaaaagaggccaaggtacagattgcttcagagagtgcaagccccaagcattggcagcctccacatggtgttcgtcctgtgggtgtgcagaagacaagaattgagctttaagaacctccacctagatttcagaggatgtattgatatgcttggatgtccaggaagaagtttgctgggttggcaagaacccttatggagaatctctgctagggcagtgcagaagaaaaatgtggtgttgga-gcccccccacagagtacccactggggcactgcctggtggagctgt--------ggtcaccatcttccagactccagaatggtagatccactgacagcttgcactgtgtgcctggaagagctgcagacactcaatgccagcctgtgaaagcagccagtaggggagcaaagccacagggatggagttgcccaaggccaagggagcccacctcttgcatcagcttgatctagatttgagacatggagtcaaaagagatcatttttgagttttgagaattgactgccctgctggatttcagacttgcatggggcctgcaacccctttgttttggccaatttctcccatctggaatgggtgtatttacccagtgctgtacttccattgtatctaggaagtaactaacttgcttttgattttacaggcttataaacagaaggaatttgccttgtctcagatgaga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28617007 2015 -  71996105 CAAGGTT-----------------------------------------ACCCCATCACAAAAAGCTGGAGATACACCTCCTAAGCCAAAAGTAGGAGAGAAAAAGCTGCATTCTGTTCAGGTTGAGATTTCAGTTCCCCTTATCAATCATTCATTGGG-CCTTAAATTCTTCATATTGTGGATTTAGACACAGTATGGTATAGAAATTAATAAACTTAATAGCTATTGTCTTGAAAAGGACACAATGCAATTGAAT-GGGAGAGGAGGAGAAGACACAAGAAACACATTACTTGCAAAATAAAATACCAAGTAGTACATTTCATGCCTTTTTATTTCATTCTTTTTTTGTTCTATTTTCCTACAAGCTTCACCAGTGCTTTCAGTCACAAGAAGATTTCTAAAATTTTGAGACAGAAACTTCTTGAGCAATGTATATGTACCCTTATACTGTAATCTGGCAGGTCTTGGTTTTAATTGC-TCTGTCTC---TCTGTCTCAGCATCACCACTGTTGACGTGTAATGTGCCTTTCACTATCCAATGCAAAGCATTTGCCATGCCAAAGTCCACATTTACTGCTCTCTGGTGCTGTTACCAAGGTAAGAGTGTATGTGCAAGTTTCTCAATTTGAGCCTTGATATTCTGGGCCCCCAGTTACAGGAATAGACTTATG-ATTCTTCTTCATTCTGAGGCCTTATTGTAACAAAATGGCTATCTTTTTATCAGACCCAATTATTCTTTCATCTTATAGATATTTCTGACTTTCCTATTATATACCTATTACATTTTAGATGGTAGTTATATAATAGTAGATAAAACATATAAAATAATCAACATCATGAAACTTATAacaataccatctcttgctcttagactctttcacagtattgatgtcatattagatttccctcattacaaaacccatttgtttattgctttgctcttagctattatttctgttctccatttacaaccaaactttttcaactttggaagtaacattaggttcagccaccgtgttgcttcacactgcagctaacaacactggtctagcaagtacttccccctcagttcactcctgctcagacagagtgacaatgtgatagaaaagaaaaacccattttcagagaagaaattcaagcaggctgcagaaatttgcataagtaaggaggagccaaatgttaatcaccaagacaatggggaaaatgtctccagggcatgtcagaggtcttcacagcagccccttccatcacaggcccagaggcctaggaggaagaaatggtttcctaggccaagtccaggaccctcctgctctatacagccttggtgcatggtgccctgtgtctcagctgcttcagccccatccttggctaaaagaggccaaggtacagattgcttcagagagtgcaagccccaagcattggcagcttccacgtggtgttggtcctgtgggtgtgcagaagacaagaattgagctttaagaacctccacctagatttcagaggatgtattgatatgcttggatgtccaggaagaagtttgctgggttggcaagagcccttatggagaatctctgctagggcagtgcagaagaaaaatgtggtgttgga-gcccccccacagagtacccactggggcactgcctggtggagctgt--------ggtcaccatcttccagactccagaatggtagatccaccgacagcttgtactgtgtgcctggaaaagctgcagacactcaatgccagcctgtgaaagcagccagtaggggagcaaagccacagggatggagttgcccaaggccatgggagcccacctcttgcatcagcttgacctagatttgagacgtggagtcaaaagagatcatttttgagttttgagaattgactgccctgctggatttcggacttgcgtggggcctgcaacccgtttgttttggccaatttctcccatctggaatgggtgtatttacccagtgctgtacttccattgtatccaggaagtaactaacttgcttttgattttacaggcttataaacagaaggaaattgccttgtctcagatgaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      65055 2015 -    352859 CAAGGTT-----------------------------------------ACCCCATCACAAAAAGCTGGAGATACACCTCCTAAGCCAAAAGTAGGAGAGAAAAAGCTGCATTCTGTTCAGGTTGAGATTTCAGTTCCCTTTATCAATCATTCATTGGG-CCTTAAATTCTTCATATTGTGGATTTAGACACAGTATGGTATAGAAATTAATGTACTTAATAGCTATTGTCTTGAAAAGGACACAATGCAATTGAAT-GGGAGAGGAGGAGAAGACACAAGAAACACATTACTTGCAAAATAAAATACCAAGTAGTACATTTCATGCCTttttatttcattctttttttgttttattttCCTACAAGCTTCACCAGTGCTTTCAGTCACAAGAAGATTTCTAAAGTTTTGAGACAGAAACTTCTTGAGCAACGTATATGTACCCCTATATTGTAATCTGGCAGGTCTTGGTTTTAATTGC-TGTGTCTC---TCTGTCTCAGCATCACCACTGTTGACGTGTAATGTGCCTTTCACTATCCAATGCAAAGCATTTGCCATGTCAAAGTCCACATTTACTGCTCTCTGGTGCTGTTACCAAGGTAAGAGTGTATGTGCAAGTTTCTCAATTTGAGCCTTGATATTCTGGGCCCCCAGTTACAGGAATAGACTTATG-ATTCTTCTTCATTCTGAGGCCTTATTGTAACAAAATGGCTATCTTTTTATCAGACCCAATTATTCTTTCATCTTATAGATATTTATGGCTTTCCTATTATATACCTATTACATTTTAGATGGTAGTTATATAATAGTAGATAAAACATATAAAATAATCAACATCATGAAACTTATAacaataccatctcttgctcttagactctttcacagtattgatgtaatattagatttccctcattacaaaacccatttgtttattgctttgctcttagctattatttctgttctccatttacaaccaaactttttcaactttggaagtaacattaggttcagccactgtgttgcttcacactgcagctaacaacactggtctagcaagtgcttccccctcagttcactcctgctcagacagagtgacaatgtgatagaaaagaaaaacccattttcagagaagaaattcaagcaggctgcagaaatttgcataagtaaggaggagccaaatgttaatcaccaagacaatggggaaaatgtctccagggcatgtcagaggtcttcacagcagccccttccatcacaggcccagaggcctaggaggaagaaatggtttcctaggccaagtccaggacccccctgctctatacagccttggtgcatggtgccctgtgtctcagctgcttcagccccatccttggctaaaagaggccaaggtacagattgcttcagagagtgcaagccccaagcattggcagcttccacgtggtgttcgtcctgtgggtgtgcagaagacaagaattgagctttaagaacctccacctagatttcagaggatgtattgatatgcttggatgtccaggaagaagtttgctgggttggcaagagcccttatggagaatctctgctagggcagtgcagaagaaaaatgtggtgttgga-gcccccccacagagtacccactggggcactgcctggtggagctgt--------ggtcaccatcttccagactccagaatggtagatccactgacagcttgcactgtgtgcctggaaaagctgcagacactcaatgccagcctgtgaaagcagccagtaggggagcaaagccacagggatggagttgcccaaggccaagggagcccacctcttgcatcagcttgacctagatttgagacatggagtcaaaagagatcatttttgagttttgagaattgactgccctgctggatttcagacttgcatggggcctgcaacccctttgttttggccaatttctcccatctggaatgggtgtatttgcccagtgctgtacttccattgtatctaggaagtaactaacttgcttttgattttacaggcttataaacagaaggaatttgccttgtctcagatgaga
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2223948 2048 -   3067355 TGAGGTTAACATATGTTTACCTGTTGCTTAACCTGAGAATAGAGAACAACCCCATCACAAAAAGCTGGAGATACACCTCCTAAGCCAAAAGTAGGAGAGAAAAAGCTGCATTCTGTTCAGGTTGAGATTTCAGTTCCCTTTATCAATCATTCATTGGG-CCTTAAATTCTTCATATTGTGGATTTAGACACAGTGGGGTATAGAAATTAATATACTTAATAGCTATCGTCTTGAAAAGAACACAATACAATTGAAT-GGGAGAGGAGGAGAAGACACAAGAAACACATTACTTGCAAAATAAAATACCAAG---------TCATGCCTTTTTATTGCATTCTTTTTTTGTTCTATTTTCCTACAAGCTTCACCAGTGCTTTCAGTACCAAGAAGATTTCTAAAGTTTTGAGACAGAAACTTCTTGAGCAACTTATATGTACCCCTATACCGTAATCTGGCAGGTCTTGGGTTTAATTGC-TCTGTCTC---TCTGTCTCAGCATCACCACTGTTGACATGTAATGTGCCTTTCACTATCCAATGCAAAGCATTTGCCATGCCAAAGTCCACATTTACTGCTCTCTGGTGCTGTTACCAAGGTAAGAGTGTATGTGCAAGTTTCTCAATTTGAGCCTTGATATTCTGGGCCCCCAGTTACAGGAATAGACTTATG-ATTTTTCTTCATTCTGAGGCCTTATTATAACAAAATGGCTATCTTTTTATCAGACCCAATTattctttcatcttatagatatttatggctttcctattatctacctattacattttagatggtagttatataatagtagataaaacatataaaataatcaacatcatggaacttataacaataccatctcttgctcttagactctttcacagtattgatgtaatattagatttccctcattacaaaacccatttgtttattgctttactcttagctattatttctgttctccatttacaaccaaactttttcaactttggaagtaacattaggttcagccactgtgttgcttcacactgcagctaacaacactggtctagcaagtgcttccccctcagttcactcctgctcagacagggtgacaatgtgatagaaaagaaaaacccattttcagaggagaaattcaagcaggctgcagaaatttgcataagtaaggaggaaccaaatgttaatcaccaagacaatggggaaaatgtctccagggcatgtcagaggtcttcactgtagccccttccatcacaggcccagaggcctaggagggagaaatggtttcctaggccaagcccagggcccccctgctccatgcagccttagtgcatggtgccctgtgtctcagctgcttcagctccatccttggctgaaagaggccaaggtacagattgcttcagagagtgcaagccccaagcattggcagcttccacgtgatgttggtcctgtgggtgtgcagaagacaagaattgagctttaagaacctccacctagatttcagaggatgtattgaaatgcttggatgtccaggaagaagtttgctgggttggcaagagcccttatggagaatctctgctagggcagtgcagaagaaaaatgtggtgttggaggccccctcacagagtacccactggggcactgcctggtggagctgt--------ggtcaccatcttccagactccagaatggtagatccaccgacagcttgcactgtgtgcctggaaaagctgcagacactcaatgccagcctgtgaaagcagccagtacgggagcaaagccacagggatggagttgcccaaggccatgggagcccacctcttgcatcagtttgacctagatttgagacatggagtcaaaagagatcatttttgagttttgagaattgactgccctgctggatttcggacttgcatggggcctgcaacccctttgttttggccagtttctcccatctggaatgggtgtatttacccggtgctgtacttccattgcatctaggaagtaactaacttgcttttgattttacaggcttataaacagaagggatttgccttgtctcagatgaga
i colAng1.NW_012115566v1   C 0 N 0
e canFam3.chr35            26204327 64688 +  26524999 T

a score=2839141.000000
s hg38.chr6_GL000254v2_alt   483989 722 +   4827813 ctttggacttggac-tttgagttaatgctggaattagttaaggctttgagggacttgttggaagggcataattgtgttttgaaatgtgaggacatgagacttgggaggggccaggcacagaatgatagggtttggccttgtctccacctaaatctaatcttgaattatagttcccataatccccatgtgtcttggtagggacctagtgagagg---ttgaatcataggagtggttactccccatgctgctgttctcatgatagtgagtgagttctcacaagatctgatgattttataaagagtttttccccttttgccctttttctctcttctgctgccatctgaagaaggatatgtttgcttccctttctgccataattgtaagtttcctgaagcctccccagccttgcggaactgtgagtcaattaaacttctttcctttataaattacccagtctcaggtacgtctttattagcagcatgagaatggactaatataccttctctcatgttaactgccctcttggatcagacgttgtagagataatttatcttgttcccaacataatttttctcttgaggggtggttttgaggttagtggtctgagttcacactcatcaaaatctgagcttattctagcattaaggtctgctttggcattctcttttaatttcattttagctattacagattacaataagcaatggattatatatttttctttt
s panTro5.chr6             29465073 722 + 175400573 ctttggacttggac-tttgagttaatgctggaattagttaaggctttgagggacttgttggaagggcataattgtgttttgaaatgtgaggacatgagacttgggaggggccagggacagaatgatagggtttggccttgtctccacctaaatctaatcttgaattgtagttcccataatccccatgtgtcttggtagggacccagtgagagg---ttgaatcataggagtggttactccccatgctgctgttctcatgatagtgagtgagttctcacaagatctgatggttttataaggagtttttccccttttgctctttttctctcttctgctgccatctgaagaaggatatgtttgcttccctttctgccataattgtaagtttcctgaagcctccccagccttgcagaactgtgagtcaattaaacttctttcctttataaattacccagtctccggtacgtctttattagcagcatgagaatggactaatataccttctctcatgttaactgccctcttggatcagacgttgtagagataatttatcttgttcccaacataatttttctcttgagggatggttttgaggttagtggtctgagttcacactcatcaaaatctgagcttagtctagcattaaggtctgctttggcattctcttttaatttcattttagctattacagattacaataagcaatggattatatatttttctttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29700847 722 + 173848474 ctttggacttggac-tttgagttaatgctggaattagttaaggctttgagggacttgttggaagggcataattgtgttttgaaatgtgaggacatgagacttgggaggggccagggacagaatgatagggtttggccttgtctccacctaaatctaatcttgaattgtagttcccataatccccatgtgtcttggtagggacccagtgagagg---ttgaatcataggagtggttactccccatgctgctgttctcatgatagtgagtgagttctcacaagatctgatggttttataaggagtttttccccttttgctctttttctctcttctgctgccatctgaagaaggatatgtttgcttccctttctgccataattgtaagtttcctgaagcctccccagccttgcagaactgtgagtcaattaaacttctttcctttataaattacccagtctccggtacgtctttattagcagcatgagaatggactaatataccttctctcatgttaactgccctcttggatcagacgttgtagagataatttatcttgttcccaacataatttttctcttgaggggtggttttgaggttagtggtctgagttcacactcatcaaaatctgagcttagtctagcattaaggtctgctttggcattctcttttaatttcattttagctattacagattacaataagcaatggattatatatttttctttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5491439 722 +   6154872 ctttggacttggac-tttgagttaatgctggaattagttaaggctttgagggatttgttggaagggcataattgtgttttgaaatgtgaggacatgagacttgggaggggccagggacagaatgatagggtttggccttgtctccacctaaatctaatcttgaattgtagttcccataatccccatgtgtcttggtagggacccagagagagg---ttgaatcataggagtggttactccccatgctgctgttctcatgatagtgagtgagttctcacaagatctgatggttttataaagagtttttccccttttgctctttttctctcttctgctgccatctgaagaaggatatgtttgcttccctttctgccataattgtaagtttcctgaagcctccccagccttgcggaactgtgagtcaattaaacttctttcctttataaattacccagtctcaggtacgtctttattagcagcatgagaatggactaatataccttctctcatgttaactgccctcttggatcagacgttgtagagataatttatcttgttcccaacataatttttctcttgaggggtggttttgaggttagtggtctgagttcacactcatcaaaatctgagcttagtctagcattaaggtctgctttggcattctcttttaatttcattttagctattacagattacaataagcaatggattatatatttttctttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74398043 723 + 122973662 ctttggacttggacttttgagttaatgctggaattagttaaggctttgagggacttgttggaagggcataattgtgttttgaaatgtgaggacatgagatttgggaggggccagggacagaatgatagggtttggccttgtctccacctaaatctaatcttgaattgtagttcccataatccccatgtgtcttggtagggacccagtgagagg---ttgaatcataggaatgattaccccccatgctgctgttctcatgatagtgagtgagttctcacaagatctgatggttttataaggagtttttccccttttgctctttttctctcttctgctgccatctgaagaaggacatgtttgcttccctttctgccctaattgtaagtttcctgaagcctccccagccttgtggaactgtgagtcaattaaactgctttcctttataaattacccagtctccggtatgtctttattagcagcatgagaatggactaatataccttccctcatattaactgccctcttggatcagaggttgtagagataatttatcttgttcccaacataatttttcacttggggggtggttttgaggttagtggtctgagttcacactcaccaaaatctgagcttagtctagcattaaggtctgctttggcattctcttttaatttcattttagctattacagattacaataagcaatggattatatatttttctttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29700163 724 + 172585720 ctttggacttggac-tttgagttaatggtggaattatttaaagctttgagggactcattggaagggcataattgtgttttgaaatgtgaggacatgagatttgaaaggggccagggacagaatgatatggttttgtcttgtccccacctaaatcgaatcttgaattgtagttcccataatccccacgtgtcttggtagggacccagtgagaggtaattgaatcataggagcagttaccccccatgctgctgttcttatcatagtgagtgagttctcacaagatctgatggttttgtaaggggtttttccccttttgctctttttctctcttctgctgccatctgaagaaggacatgtttgcttccttttctgccataattgtaagtttcctgaggcctccccagccctatggaactgtgagtcaattaaacttctttcctttataaactacccagtctcaggtacgtctttattagcagtgtgagaatggactaatataccttctctcatgttaactaccctcttggatcagagatcgtagagataatttctcttgttcccaacataatttttctgttt-ggggtggttttgaggttagtggtctgagttcacactcaccaaaatctgaacttagtctagcattaagatctgctttggcattctcttttaatttcagtttagctattacagattacaataagcaatggattatttatttttctttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29362828 724 - 170955103 ctttggacttggac-tttgagttaatggtggaattatttaaagctttgagggactcattggaagggcataattgtgttttgaaatgtgaggacatgagatttgaaaggggccagggacagaatgatatggttttgtcttgtccccacctaaatcgaatcttgaattgtagttcccataatccccacgtgtcttggtagggacccagtgagaggtaattgaatcataggagcggttaccccccatgctgctgttcttatcatagtgagtgagttctcacaagatctgatggttttgtaaggggtttttccccttttgctctttttctctcttctgctgccacctgaagaaggacatgtttgcttccttttctgccataattgtaagtttcctgaggcctccccagccctatggaactgtgagtcaattaaacttctttcctttataaactacccagtctcaggtacgtctttattagcagtgtgagaatggactaatataccttctctcatgttaactaccctcttggatcagagatcgtagagataatttctcttgttcccaacataatttttctgttt-ggggtggttttgaggttagtggtctgagttcacactcaccaaaatctgaacttagtctagcattaagatctgctttggcattctcttttaatttcagtttagctattacagattacaataagcaatggattatttatttttctttt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      98130 724 +    766320 ctttggacttggac-tttgagttaatggtggaattaattaaagctttgagggactcattggaaggacataattgtgttttgaaatgtgaggacatgagatttgaaaggggccagggacagaatgatatggttttgtcttgtccccacctaaatcaaatcttgaattgtagttcccataatccccacgtgccttggtagggacccagtgagaggtaattgaatcataggagcggttaccccccatgctgctgttcttatcatagtgagtgagttctcacaagatctgatggttttgtaaggggtttttccccttttgctctttttctctcttctgctgccacctgaagaaggacatgtttgcttccttttctgccataattgtaagtttcctgaggcctccccagccctatgaaactgtgagtcaattaaacttctttcctttataaactacccagtctcaggtacatctttattagcagtgtgagaatggactaatataccttctctcatgttaactaccctcttggatcagagatcgtagagataatttctcttgttcccaacataatttttctgttt-ggggtggttttgaggttagtggtctgagttcacactcaccaaaatctgaacttagtctagcattaagatctgctttggcattctcttttaatttcagtttagctattacagattacaataagcaatggattatttatttttctttt
i cerAty1.NW_012002711v1   C 0 N 0
s chlSab2.chr17            28619022 724 -  71996105 ctttgaacttggac-tttgagttaatggtggaattaattaaagctttgagggactcattggaagggcataattgtgttttgaaatgtgaggacatgaaatttgaaaggggccagggacagaatgatatggttttgtcttgtccccacctaaatcgaatcttgaattgtagttcccataatccccacgtgtcttggtagggacccagtgagaggtaattgaatcataggagtggttaccccccatgctgctgttcttatcatagtgagtgagttctcacaagatctgatggttttgtaaggggtttttccccttttgctctttttctctcttctgctgccatctgaagaaggacatgtttgcttccttttctgccatagttgtaagtttcctgaggcctctccagccctatgaaactgtgagtcaattaaacttctttcctttataaactacccagcctcaggtacatctttattagcagtgtgagaatggactaatataccttctctcatgttaactaccctcttggatcagagattgtagagataatttctcttgttcccaacataatttttctgttt-ggggtggttttgaggttagtggtctgagttcacactcaccaaaatctgaacttagtctagcattaagatctgctttggcattctcttttaatttcagtttagctgttacagattacaataagcaatggattatttatttttctttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      67070 724 -    352859 ctttggacttggac-tttgagttaatggtggaattaattaaagctttgagggactcattggaagggcataattgtgttttgaaatgtgaggacatgagatttgaaaggggccagggacagaatgatatggttttgtcttgtccccacctaaatcgaatcttgaattgtagttcccataatccccacgtgtcttggtagggacccagtgagaggtaattgaatcataggagcggttaccccccatgctgctgttcttatcatagtgagtgagttctcacaagatctgatggttttgtaaggggtttttccccttttgctctttttctctcttctgctgccacctgaagaaggacatgtttgcttccttttctgccataattgtaagtttcctgaggcctccccagccctatggaactgtgagtcaattaaacttctttcctttataaactacccagtctcaggtacgtctttattagcagtgtgagaatggactaatataccttctctcatgttaactaccctcttggatcagagatcgtagagataatttctcttgttcccaacataatttttctgttt-ggggtggttttgaggttagtggtctgagttcacactcaccaaaatctgaacttagtctagcattaagatctgctttggcattctcttttaatttcagtttagctattacggattacaataagcaatggattatttatttttctttt
i manLeu1.NW_012099655v1   C 0 C 0
e canFam3.chr35            26204327 64688 +  26524999 T

a score=3809572.000000
s hg38.chr6_GL000254v2_alt   484711 1267 +   4827813 aaaaattagtttgcatttctttatggatcttgtgaaccagctctctgggggttggatttgtatctaaattATAGAAAATTTGAATGATCCTGGGAAGACAGGAGGCTTTTCTCTCCAGCAATTTGCAGAGTTGGGTCTGTAGTTAAGATCAAGAGCAGTTGACAGAATTGGTAGCAGCACAAGAGATCATGAGCCACCTAAGGTGACCTAACTGAGTTGTTTCTGGAGATCTA-------------------Attttttttttttt------agatggaatctcactctgtcggtcaggctggagtgcagtgg--------------------tgccatctcagctcactgtaacctctgctgcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggattagaggtgcctgccactgcacctggctaatttttgtagttttagtagagacgggatttcaccatcttggccaggctggtcttgaactcctgacctcatgatctaccctcctcagcctcccaaagtgctgggattacaggcatgagccaccacgcccagccTCTAATTTCttttttttaaatttaatttaatattaagttccgggatgcatttgcaggacgtgcaggtttgttacataggtaaatgtatgtcatggtggtttgctgcacctattaacccaccacgtaggtattaagccccacatgcattagctatttatcctgatgctcttcccacctatccccgacaggtcccagtgtgtgtggttcccctccctgtgtccatgtgttttcattgttcagctcccacttataagtgagaacatgcagtgtttggtcttctgttcgtgtgttagtttgctgagaatgatggcttccagctccatccatgtctctgcaaaggatgtgatcttgttccttttcatggctgtgtagtattcagtggtgtatatgtaccacattttctttatccagtctatcattgataggcattggggttgattccatgcctttgctattgtgaatagtgctgcaaagtacatatgtgtgcatgtatctttataataaaatgatttatattcctttgggtataaacccagtaatgggattgctgggtcaaatggtatttctggttctaggtctttgaggaattgccacactgtctttcacaatggttgaactcaggcatcctataaaatgggagaaaatttttgcaatctatccatctgacaaaggtctaatatccagaatctataaggagcatcactgattattagagaaatgcaaatcaaaaccagaatgaga
s panTro5.chr6             29465795 1265 + 175400573 aaaaattagtttgcatttctttatggatcttgtgaaccaactctctgggggttggatttgtatctaaattATAGAAAATTTGAATGATCCTGGGAAGACAGGAGGCTTTTCTCTCCAGCAATTTGCAGAGTTGGGTCTGTAGTTAAGATCAAGAGCAGTTGACAGAATTGGTAGCAGCACAAGAGATCATGAGCCACCTAAGGTGACCTAACTGAGTTGTTTCTGGAGATCTA-------------------A--ttttttttttt------agatggaatctcactctgtcggtcaggctggagtgcagtgg--------------------tgccatctcagctcactgtaacctctgctgcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggattagaggtgcctgccactgcacctggctaatttttgtagttttagtagagacgggatttcaccatcttggccaggctggtcttgaactcctgacctcgtgatctaccctcctcagcctcccaaagtgctgggattacaggcatgagccaccacgcccagccTCTAATTTCTttttttttaatttaatttaatattaagttccgggatgcatttgcaggacgtgcaggtttgttacataggtaaatgtatgtcatggtggtttgctgcacctattaacccaccacgtaggtattaagccccacatgccttagctatttatcctgatgctcttcccacctatccctgacaggtcccagtgtgtgtggttcccctccctgtgtccatgtgttttcattgttcagctcccacttataagtgagaacatgcagtgtttggtcttctgttcgtgtgttagtttgctgagaatgatggcttccagctccatccatgtctctgcaaaggacgtgatcttgttccttttcatggctgtatagtattcagtggtgtatatgtaccacattttctttatccagtctatcattgataggcattggggttgattccatgcctttgctattgtgaatagtgctgcaaagtacatatgtgtgcatgtatctttataataaaatgatttatattcctttgggtataaacccagtaatgggattgctgggtcaaatggtatttctggttgtcggtctttgaggaattgccacactgtctttcacaatggttgaactcaggcatcctataaaatgggagaaaatttttgcaatctatccatctgacaaaggtctaatatccagaatctataaggagcatcactgattattagagaaatgcaaatcaaaaccagaatgaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29701569 1243 + 173848474 aaaaattagtttgcatttctttatggatcttgtgaaccaactctctgggggttggatttgtatctaaattATAGAAAATTTGAATGATCCTGGGAAGACAGGAGGCTTTTCTCTCCAGCAATTTGCAGAGTTGTGTCTGTAGTTAAGATCAAGAGCAGTTGACAGAATTGGTAGCAGCACAAGAGATCATGAGCCACCTAAGGTGACCTAACTGAGTTGTTTCTGGAGATCTA-------------------A--TTTTTTTTTT------------------------------------------------NNNNNNNNNNNNNNNNNNNNTgccatctcagctcactgtaacctctgctgcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggattagaggtgcctgccactgcacctggctaatttttgtagttttagtagagacgggatttcaccatcttggccaggctggtcttgaactcctgacctcgtgatctaccctcctcagcctcccaaagtgctgggattacaggcatgagccaccacgcccagccTCTAATTTCTttttttttaatttaatttaatattaagttccgggatgcatttgcaggacgtgcaggtttgttacataggtaaatgtatgtcatggtggtttgctgcacctattaaaccaccacgtaggtatgaagccccacatgcattagctatttatcctgatgctcttcccacctatccctgacaggtcccagtgtgtgtggttcccctccctgtgtccatgtgttttcattgttcagctcccacttataagtgagagcatgcagtgtttggtcttctgttcgtgtgttagtttgctgagaatgatggcttccagctccatccatgtctctgcaaaggacgtgatcttgttccttttcatggctgtatagtattcagtggtgtatatgtaccacattttctttatccagtctatcattgataggcattggggttgattccatgcctttgctattgtgaatagtgctgcaaagtacatatgtgtgcatgtatctttataataaaatgatttatattcctttgggtataaacccagtaatgggattgctgggtcaaatggtatttctggttcttggtctttgaggaattgccacactgtctttcacaatggttgaactcaggcatcctataaaatgggagaaaatttttgcaatctatccatctgacaaaggtctaatatgcagaatctataaggagcatcactgattattagagaaatgcaaatcaaaaccagaatgaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5492161 1264 +   6154872 aaaaattagtttgcatttctttatggatcttgtgaaccaactctctgggggttggatttgtatctaaattATAGAAAATTTGAATGATCCTGGGAAGACAGGAGGCTTTTCTCTCCAGCAATTTGCAGAGTTGGGTCTGTAGTTAAGATCAAGAGCAGTTGACAGAATTGGTAGCAGCACAAGAGATCATGAGCCACCTAAGATGACCTAACTGAGTTGTTTCTGGAGATCTA-------------------A--tttttttttt-------agatggaatctcactctgtcagtcaggctggagtgcagtgg--------------------tgccatctcagctcactgtaacctctgctgcctgggttcaagcaattctgctgcctcagcctcctgagtagctgggattagaggtgcctgccactgcacctggctaatttttgtagttttagtagagacgggatttcaccatcttggccaggctggtcttgaactcctgacctcgtgatctaccctcctcagcctcccaaagtgctgggattacaggcatgagccaccacgcccagccTCTAATTTCtttttttaaaatttaatttaatattaagttctgggatgcatttgcaggacgtgcaggtttgttacataggtaaatgtatgtcatggtggtttgctgcacctattaacccaccacataggtactaagccccacatgcattagctatttatcctgatgctcttcccacctatccccgacaggtcccagtgtgtgtggttcccctccctgtgtccatgtgttttcattgttcagctcccacttataagtgagaacatgcagtgtttggtcttctgttcgtgtgttagtttgctgagaatgatggcttccagctccatccatgtctctgcaaaggacgtgatcttgttccttttcatggctgtatagtattcagtagtgtatatgtaccacattttctttatccagtctatcattgataggcattggggttgattccatgcctttgctattgtgaatagtgctgcaaagtacatatgtgtgcatgtatctttataataaaatgatttatattcctttgggtctaaacccagtaatgggattgctgggtcaaatggtgtttctggttctaggtctttgaggaattgccacactgtctttcacaatggttgaactcaagcatcctataaaataggagaaaatttttgcaatctatccatctgacaaaggtctaatatccagaatctataaggagcatcactgattattagagaaatgcaaatcaaaaccagaatgaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74398766 1258 + 122973662 aaaagttagtttgtatttctttatggatcttgtgaaccaactctctgggggttagatttgtatctaaattATAGAAAATGTGAATGATCCTGGGAAGACAGGAGGCTTTTCTCTCCAACAATTTGCAGAGTTGGGTCTGTAGTTAAGATCAAGAGCAGTTGACAGAATTGGTAGCAGCACAAGAGATCATGAGCCACCTAAGGTGACCTAGCTGA---GTTTCTGGAGATCTA-------------------A--ttttttttt--------agatggaatctcactctgtcagtcaggctggagtgcagtga--------------------tgccatctcagctcactgtaacctctgctgcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggattagaggtgcctgccactgcacctggctaatttttgtagttttaatagagaaaggatttcaccatcttggccaggctggtcttgaactcctgacctcgtgatctacctgcctcagcctcccaaagtgctgggattacaggcatgagc--ccacgcccagccTCTAATTTCTttttttttaatttaatttaattttaagttccgggatgcatttgcaggatgtgcaggtttgttatataggtaaatgtatgtcatggtggtttgctgcacctattaacccaccacctaggtattaagccccacatgcattagctatttatcctgatgctcttcccacatacccccgacaggtcccagtgtgtgtggttcccctccctgtgtccatgtgttttcattgttcagctcccacttataagtgagaacatgcagtgtttggtcctctgtttgtgtgttagtttgctgagaatgatggcttccagctccatccatgtccctacaaaggacatgatcttgttccttttcattgctgcatagtattccgtggtgtatatgtaccacattttctttatccagtctatcattgataggcattggggttgattccgtgcctttgctattgtgaatagtgctgcaaagtacatatgtgtgcatgtatctttataatagaatcatttatattcctttgggtataaacccagtaatgggcttgctgggtcaaatggtatttctggttctaggtctttgaggaactgccacactgtcttccacaatggttgaactcaggcatcccataaaatgggagaaaatttttgcaatctatccttctgacaaaggtctaatatccagaatctataaggagcatcactgattattagagaaatgtaaatcaaaaccacaatgaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29700887 1249 + 172585720 aaaaattagtttgcatttctttatggatctcatgaaccaactctctgggggttggatttgtatctaaattATAGAAAATTTGAATGATCCTGGGAAGATAGGAGGCTTTTCTCTCCAACAATTAGCAGAGTTGGGTCTGTAGTTAAGGTCAAGAGCAGTTGACAGAATTGGTAGTAGGCCAAGAGATCATGAGCAACCTAAGGTGACCTAACTGAGTTGTTTCTGGAGATCTA----------------------ttttttttttttttttgagatggagtctca--ctgtcagtcaggctggagtgcagtgg--------------------tgccatctcagctcactgcaacctctgctgcctaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggtgcctgccactgcatccagctaatttttgtagttttagtagagacgggatttcactatcttgtccaggctggtcttgaactcctggcctcgtgatttacccacctcggtctcccaaagtgctgggattataggcatgagccaccatgaccagccTCTAATTTCTTTTTTAAAAAtttaatttaattttaagttccgggataca------------------ttgttacataggtaaatgtgtgccatggtggtttgctgcacctattaacccaccac-taggtattaagccccacaagcattggctatgtattctgatgctctccctacctactcctggcaggtcccagtgtgtattgttcccctccctgtgtccacatgttttcattgttcagttcccacttataagtgagaacatgtagtgtttgcttttctgttcatgtgttagtttgctgagaatgatggcttccagctccatccatgtccctacaaaggacatgatcttgttccttttcatggctgcacagtattccatggtatacatgtaccacattttctttatccagtctatcattgacgggcattggggttgattccatgactttgctattgtgaatagtgctgcaaagttcatatgtatgcatgtatctttataatagaatgatttatattcctttgggtgtaaacccagtaatgggattgttgggtcaaatggtatttctggttctaggtctttgaggaattgccacactgtcttccacgatggttgaactcagacaacctatagaaagggagaaaatttttgcaatctatccatctgacaaaggtctaatatcaagcatctacaaggaacatcactgattattagagaaatgcaaatcaaaaccacagtgaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29363552 1250 - 170955103 taaaattagtttgcatttctttatggatctcatgaaccaactctctgggggttggatttgtatctaaattATAGAAAATTTGAATGATCCTGGGAAGATAGGAGGCTTTTCTCTCCAACAATTAGCAGAGTTGGGTCTGTAGTTAAGGTCAAGAGCAGTTGACAGAATTGGTAGTAAGCCAAGAGATCATGAGCAACCTAAGGTGACCTAACTGAGTTGTTTCTGGAGATCTA-------------------t--ttttttttttttttttgagatggagtctca--ctgtcagtcaggctggagtgcagtgg--------------------tgccatctcagctcactgcaacctctgctgcctaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggtgcctgccactgcatccagctaatttttgtagatttagtagagacgggatttcactatcttgtccaggctggtcttgaactcctggcctcgtgatttacccacctcagtctcccaaagtgctggaattataggcatgagccaccatgaccagccTCTAATTTCTTTTTTAAAAAtttaatttaattttaagttccgggataca------------------ttgttacataggtaaatgtgtgccatggtggtttgctgcacctattaacccaccac-taggtattaagccccacaagcattagctatttattctgatgctctccctacctactcctggcaggtcccagtgtgtattgttcccctccctgtgtccacatgttttcattgttcagttcccacttataagtgagaacatgtagtgtttgctcttctgttcatgtgttagtttgctgagaatgatggcttccagctccatccatgtccctacaaaggacatgatcttgttccttttcatggctgcacagtattccatggtatatatgtaccacattttctttatccagtctatcattgatgggcattggggttgattccatgcctttactattgtgaatagtgctgcaaagttcatatgtgtgcatgtatctttataatagaatgatttagattcctttgggtgtaaacccagtaatgggattgttgggtcaaatggtatttctggttctaggtctttgaggaattgccacactgtcttccacaatggttgaactcagacaacctatagaaagggagaaaatttttgcaatctatccatctgacaaaggtctaatatcaagcatctacaaggaacatcactgattattagagaaatgcaaatcaaaaccacagtgaga
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            28619746 1269 -  71996105 aaaaattagtttgcatttctttatggatctcatgaaccaactctctgggggttggatttgtatctaaattATAGAAAATTTGAATGATCCTGGGAAGATAGGAGGCTTTTCTCTCCAACAATTAGCAGAGTTGGGTCTGTAGTTAAGGTCAAGAGCAGTTGACAGAATTGATAGTAGGCCAAGAGACCATGAGCAACCTAAGGTGACCTAACTGAGTTGTTTCTGGAGATCTAAttttttttttttttttttt--ttttttttttttttttgagatggagtctca--ctgtcagtcaggctggagtgcagtgg--------------------tgccatctcagctcactgcaacctctgctgcctaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggtgcctgccactgcatccagctaatttttgtagttttagtagagacaggatttcactatcttgtccaggctggtcttgaactcctggcctcgtgatttacccacctcggtctcccaaagtggtgggattataggcatgtgccaccacaaccagccTCTAATTTCTTTTTTAAAAAtttaatttaattttaagttctgggataca------------------ttgttacataggtaaatgtgtgccatggtggtttgctgcacctattaacccaccac-taggtattaagccccaaaagcattagctatttattctgatgctctccctacctactcctggcaggtcccagtgtgtattgttcccctccctgtgtccacatgttttcattgttcagttcccacttataaatgagaacatgtagtgtttgctgttctgttcatgtgttagtttgctgagaatgatggcttccagctccatccatgtccctacaaaggacatgatcttgttccttttcatggttgcacagtattccatggtatatatgtaccacattttctttatccagtctatcatttatgggcattggggttgattccatgcctttgctattgtgaatagtgctgcaaagttcatatgtgtgcatgtatctttataatagaatgatttatattcctttgggtgtaaacccagtaatgggattgttgggtcaaatggtatttctggttctaggtctttgaggaattgccacactgtcttccacaatggttgaactcagacaacctatagaaagggagaaaatttttgcaatctatccatctgacaaaggtctaatatcaagcatctacaaggaacatcactgattattagagaaatgcaaatcaaaaccacagtgaga
i chlSab2.chr17            C 0 N 0
s manLeu1.NW_012099655v1      67794 1255 -    352859 aaaaattagtttgcatttctttatggatctcatgaaccaactctctgggggttggatttgtatctaaattATAGAAAATTTGAATGATCCTGGGAAGATAGGAGGCTTTTCTCTCCAACAATTAGCAGAGTTGGGTCTGTAGTTAAGGTCAAGAGCAGTTGACAGAATTGGTAGTAGGCCAAGAGATTATGAGCAACCTAAGGTGACCTAACTGAGTTGTTTCTGGAGATCTA--------------tttttt--ttttttttttttttttgagatggagtctca--ctgtcagtcaggctggagtgcagtgg--------------------tgccatctcagctcactgcaacctctgctgcctaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggtgcctgccactgcatccagctaatttttgtagttttagtagagacgggatttcactatcttgttcaggctggtcttgaactcctggcctcgtgatttacccacctcggtctcccaaagtgctgggattataggcatgagccaccatgaccagccTCTAATTTCTTTTTTAAAAAtttaatttaattttaagttccaggataca------------------ttgttacataggtaaatgtgtgccatggtggtttgctgcacctattaacccaccac-taggtattaagccccacaagcattagctatttattctgatgctctccctacctactcctggcaggtcccagtgtgtattgttcccctccctgtgtccacatgttttcattgttcagttcccacttataagtgagaacatgtagtgtttgctcttctgttcatgtgttagtttgctgagaatgatggcttccagctccatccatgtccctacaaaggacatgatcttgttccttttcatggctgcacagtattccatggtatatatgtaccacattttctttatccagtctatcattgatgggcattggggttgattccatgcctttgctattgtgaatagtgctgcaaagttcatatgtgtgcatgtatctttataatggaatgatttatattcctttgggtgtaaacccagtaatgggattgttgggtcaaatggtatttctggttctaggtctttgaggaattgccacactgtcttccacaatggttgaactcagacaacctatagaaagggagaaaatttttgcaatctatccatctgacaaaggtctaatatcaagcatctacaaggaacatcactgattgttagagaaatgcaaatcaaaaccacagtgaga
i manLeu1.NW_012099655v1   C 0 C 0
e canFam3.chr35            26204327 64688 +  26524999 T

a score=70301.000000
s hg38.chr6_GL000254v2_alt   485978 27 +   4827813 taacatctcacaccagtcagaatggcC
s panTro5.chr6             29467060 27 + 175400573 taacatctcacaccagtcagaatggcc
i panTro5.chr6             C 0 I 59825
s panPan2.chr6             29702812 27 + 173848474 taacatctcacaccagtcagaatggcc
i panPan2.chr6             C 0 I 62735
s gorGor5.CYUI01015250v1    5493425 27 +   6154872 taacatctcacaccagtcagaatggcc
i gorGor5.CYUI01015250v1   C 0 I 74932
s nomLeu3.chr1a            74400024 27 + 122973662 taacatctcacaccagtcaaaatggcc
i nomLeu3.chr1a            C 0 I 56717
s rheMac8.chr4             29702136 27 + 172585720 taacatctcacaccagtcagaatggcc
i rheMac8.chr4             C 0 I 94632
s macFas5.chr4             29364802 27 - 170955103 taacatctcacaccagtcagaatggcc
i macFas5.chr4             C 0 I 94265
s manLeu1.NW_012099655v1      69049 27 -    352859 taacacctcacaccagtcagaatggcc
i manLeu1.NW_012099655v1   C 0 N 0
e canFam3.chr35            26204327 64688 +  26524999 T

a score=0.000000
s hg38.chr6_GL000254v2_alt   486005 68831 +   4827813 [encoded data, 68831 characters]
e canFam3.chr35            26204327 64688 +  26524999 T
e macFas5.chr4             29364829 94265 - 170955103 I
e rheMac8.chr4             29702163 94632 + 172585720 I
e nomLeu3.chr1a            74400051 56717 + 122973662 I
e gorGor5.CYUI01015250v1    5493452 74932 +   6154872 I
e panPan2.chr6             29702839 62735 + 173848474 I
e panTro5.chr6             29467087 59825 + 175400573 I

a score=17446.000000
s hg38.chr6_GL000254v2_alt   554836 3 +   4827813 GGC
s panTro5.chr6             29526912 3 + 175400573 GGC
i panTro5.chr6             I 59825 C 0
s panPan2.chr6             29765574 3 + 173848474 GGC
i panPan2.chr6             I 62735 C 0
s gorGor5.CYUI01015250v1    5568384 3 +   6154872 GGC
i gorGor5.CYUI01015250v1   I 74932 C 0
s rheMac8.chr4             29796795 3 + 172585720 GGC
i rheMac8.chr4             I 94632 C 0
s macFas5.chr4             29459094 3 - 170955103 GGC
i macFas5.chr4             I 94265 C 0
s macNem1.NW_012011356v1    2445626 3 -   2996164 GGC
i macNem1.NW_012011356v1   N 0 C 0
s cerAty1.NW_012002711v1     210121 3 +    766320 GGC
i cerAty1.NW_012002711v1   N 0 C 0
s chlSab2.chr17            28722330 3 -  71996105 GGC
i chlSab2.chr17            N 0 C 0
s manLeu1.NW_012099655v1     183333 3 -    352859 GGC
i manLeu1.NW_012099655v1   N 0 C 0
s cebCap1.NW_016107522v1     188726 3 +   3820305 GGC
i cebCap1.NW_016107522v1   N 0 C 0
s otoGar3.GL873742          1944030 3 -   2232465 GGA
i otoGar3.GL873742         N 0 C 0
e canFam3.chr35            26204327 64688 +  26524999 T
e nomLeu3.chr1a            74400051 56717 + 122973662 I

a score=178963.000000
s hg38.chr6_GL000254v2_alt   554839 28 +   4827813 CAACTAAGTACATGAACCTTACTAAGTC
s panTro5.chr6             29526915 28 + 175400573 CAACTAAGTACATGAACCCTACTAAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29765577 28 + 173848474 CAACTAAGTACATGAACCCTACTAAGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5568387 28 +   6154872 CAACTAAGTACATGAACCCTACTAAGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29796798 28 + 172585720 CAACTAAGTACATGAACCCTACTAAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29459097 28 - 170955103 CAACTAAGTACATGAACCCTACTAAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2445629 28 -   2996164 CAACTAAGTACATGAACCCTACTAAGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     210124 28 +    766320 CAACTAAGTACATGAACCCTACTAAGTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28722333 28 -  71996105 CAACTAAGTACATGAACCCTACTAAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     183336 28 -    352859 CAACTAAGTACATGAACCCTACTAAGTC
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2351920 28 -   3067355 CAACTAAGTACATGAACCCTACTAAGTC
i colAng1.NW_012115566v1   N 0 C 0
s cebCap1.NW_016107522v1     188729 28 +   3820305 CAGCGAAGTACCTGAATCCTACTAAGTC
i cebCap1.NW_016107522v1   C 0 C 0
s otoGar3.GL873742          1944033 28 -   2232465 CAGCTAATGCCATTAACCCTAATAATTT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35            26204327 64688 +  26524999 T
e nomLeu3.chr1a            74400051 56717 + 122973662 I

a score=736440.000000
s hg38.chr6_GL000254v2_alt    554867 102 +   4827813 AGGATCACAAGAAGAATATGACATAGGG-CAACTGAGAGGATCAGAAAAGTAAATAGAGGATCCTGAGCTGAT--TTCAGAGCAGTCACATTTTGTTTACTATCC
s panTro5.chr6              29526943 102 + 175400573 AGGATCACAAGAAGAATATGACATAGGG-CAACTGGGAGGATCAGAAAAGTAAATAGAGGATCCTGAGCTGAT--TTCAGAGCAGTCACATTTTGTTTACTATCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29765605 102 + 173848474 AGGATCACAAGAAGAATATGACATAGGG-CAACTGAGAGGATCAGAAAAGTAAATAGAGGATCCTGAACTGAT--TTCAGAGCAGTCACATTTTGTTTACTATCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5568415 102 +   6154872 AGGATCACAAGAAGAATATGACATACGG-CAACTGAGAGGATCAGAAAAGTAAATAGAGGATCCTGAGCTGAT--TTCAGAGCAGTCACATTTTGTTTACTATCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29796826 101 + 172585720 AGGATCACAAGAAGAATATGACGTAGGG-CAAATGAGAGGATCAGAAAAGTAAATAGAGGA-CCTGAGCTGAT--TTCAGAGCAGTCACATTTTGTTTACTATCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29459125 101 - 170955103 AGGATCACAAGAAGAATATGACGTAGGG-CAAATGAGAGGATCAGAAAAGTAAATAGAGGA-CCTGAGCTGAT--TTCAGAGCAGTCACATTTTGTTTACTATCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2445657 101 -   2996164 AGGATCACAAGAAGAATATGACGTAGGG-CAAATGAGAGGATCAGAAAAGTAAATAGAGGA-CCTGAGCTGAT--TTCAGAGCAGTCACATTTTGTTTACTATCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      210152 101 +    766320 AGGATCACAAGAAGAACATGACACAGGG-CAAATGAGAGGATCAGAAAAGTAAATAGAGGA-CCTGAGCTGAT--TTCAGAGCAGTCACATTTTGTTTACTATCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28722361 102 -  71996105 AGGATCACAAGAAGAATATGACGTAGGG-CAAATGAGAGGATCAGAAAAGTAGATAGAGGATCCTGAGCTGAT--TTCAGAACAGTCACATTTTGTTTACTATCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      183364 101 -    352859 AGGATCACAAGAAGAATATGACGTAGGG-CAAATGAGAGGATCAGAAAAGTAAATAGAGGA-CCTGAGCTGAT--TTCAGAGCAGTCACATTTTGTTAACTATCC
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2351948 102 -   3067355 AGGATCACAAGAAGAATATGACGTAGGG-CAAATGAGAGGATCAGAAAAGTAAATAGAGGATCCTGAGCTGAT--TTCAGAGAAGTCACATTTTGTTTACTATCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr6             126566259 102 - 158406734 AGAAACAAAGAAAGAGAATGATGTAGGG-CAACTGAGAGGATCAGGAAAGTAAATAGAGGATCCTGAGCTGAT--TTTGAAGCAGTCACATTTTGTTTACTATCC
i calJac3.chr6             N 0 C 0
s cebCap1.NW_016107522v1      188757 102 +   3820305 AGGATCACAAGAAGAAAATGACGTAGGG-CAAACGAGAGGATCAGAAAAGTAAACAGAGGATCCTGAGCTGAT--TTCGGAGCAGACACATTTTGTTTACTATCC
i cebCap1.NW_016107522v1   C 0 C 0
s otoGar3.GL873742           1944061 105 -   2232465 AGGATCACAAGAAGAATATGATGTATGACCAATTAAGAAGATCAGAAAAATAAGGGGAAGATCCTGAGCTGATAGTTTCTAGTAGTCACATAATTTTTGCCATCC
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             26204327 64688 +  26524999 T
e nomLeu3.chr1a             74400051 56717 + 122973662 I

a score=762839.000000
s hg38.chr6_GL000254v2_alt    554969 107 +   4827813 TCTAATAAATATTTGTTTA---TTGTTACAAATATCATTATAAACTGCAT--AAATGCATAAAAATAAAACAACTGTAATACATCTGGGGATTCATAATTAGGTAAGTATAT
s panTro5.chr6              29527045 107 + 175400573 TCTAATAAATATTTGTTTA---TTGTTACAAATATCATTATAAACTGCAT--GAATGCATAAAAATAAAACAACTGTAATACATCTGGGGATTCATAATTAGGTAAGTATAT
i panTro5.chr6             C 0 I 376
s panPan2.chr6              29765707 107 + 173848474 TCTAATAAATATTTGTTTA---TTGTTACAAATATCATTATAAACTGCAT--AAATGCATAAAAATAAAACAACTGTAATACATCTGGGGATTCATAATTAGGTAAGTATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5568517 107 +   6154872 TCTAATAAATATTTGTTTA---TTGTTACAAATATCATTATAAACTGCAT--AAATGCATAAAAATAAAACAACTCTAATACATCTGGGTATTCATAATTAGGTAAGTATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74456768 107 + 122973662 TCTAATAAATATTTGTTTA---TTGTTACAAATATCATTATAAACTGTGTAAAAATGCATAAAAATAAAACAAC--TAATATATCTGGGGATTCATAATTAGGTAAGTATAC
i nomLeu3.chr1a            I 56717 C 0
s rheMac8.chr4              29796927 105 + 172585720 TCTAATAAATA----TTTA---TTATTACAAATATAATTATGAACTGTGTATAAATGCACAAAAATAAAACAATTGTAATATATCTGGGGATTCATAATGAGGTAAGTATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29459226 105 - 170955103 TCTAATAAATA----TTTA---TTATTACAAATATAATTATGAACTGTGTATAAATGCACAAAAATAAAACAATTGTAATATATCTGGGGATTCATAATGAGGTAAGTATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2445758 105 -   2996164 TCTAATAAATA----TTTA---TTATTACAAATATAATTATGAACTGTGTATAAATGCACAAAAATAAAACAATTGTAATATATCTGGGGATTCATAATTAGGTAAGTATAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      210253  93 +    766320 TCTAATAAATA----TTTA---TTATTACAAATATAATTATAAACTGTGTATAG------------AAAACAATTGTAATATATCTGGGGATTCATAATTAGGTAAGTATAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28722463 105 -  71996105 TCTAATAAATA----TTTA---TTATTACAAATATCATTATAAATTGTGTATAGATGCATAAAAATAAAACAATTGTAATATATCTGGGGATTCATGATTAGGTAAGTATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      183465 105 -    352859 TCTAATAAATA----TTTA---TTATTACAAATATAATTATAAACTGTGTATAAATGCACAAAAATAAAACAATTGTAATATATCTGGGGATTCATAATTAGGTAAGTATAT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2352050 105 -   3067355 TCTAATAAATA----TTTA---TTATTACAAATATCATTATAAACTGTGTATAAATGCATAAAAATAAAACAATTGTAATATATCTGGGGATTCATAATTAGGTAAGTGTAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr6             126566361 109 - 158406734 CCTAATAAATATTTGCTTA---TTATTACCAATATCATTATAAACTGTTTATAGACACATAAAAAGAAAACAATTTTAATATTTCTGGGAATTCATAATTAGGTAAGTATAT
i calJac3.chr6             C 0 I 18
s cebCap1.NW_016107522v1      188859 109 +   3820305 CCTAATAAATATTTGCTTA---TTATTACCAATATCATTGTAAACTGTTTATAGATGCATAAAAAGAAAACAATTACAATATATCTGGGAATTCATAATTAGGTAAGTATAT
i cebCap1.NW_016107522v1   C 0 I 19
s otoGar3.GL873742           1944166 108 -   2232465 CCTAGTAGACATTTGTTAATATTTATTACAAATACCACTACATGCTGTGTATAGATGCACAAAGATACAGAAATTACAATATGTTTGAAAATTCATAATTAGGTAAAT----
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             26204327 64688 +  26524999 T

a score=7790425.000000
s hg38.chr6_GL000254v2_alt    555076 1000 +   4827813 aataattgtta------------------atagtcattgaattattagtatatgacaagaactgagctatgtt------tgcaatgtacactctattccttaatttgtacactagttctatgagatgggtataattatgcttatttgaaagatgagaaaattgaagcacacaaagattaaatgacatctccaaagtcacacagctaatgaatggaatgactgggatttggaggaaatcctagtcttttATAAATGTCTTTTATAAAACAACTAGAGAAAAACACAAGACAAATTTACTAAAAGATAAGAGTCAAAC-AAAAA-AAGAAATTTGGGATTGTAGGGAATGGAAAAATTTGCAATTGGAGTTATTCTTTAGAAATTATATGATAAAGGAATTGTGTAATTTGGATGGGCAAAGAGCAGGATAGAGGCAATTTTGGTGGAAAAAATAGTATCAGTAATTAG-AAAATATGAGAATAAAGA--AGGGAGAGAGA-GGGAAAATGATTAAGTTTATATGTGCTGAGAATGATGCTGAGAGATTACAAATTCATATA-CATCCTCAAATTTCAAGGATTCACATATTTAAAACTCTTTCTGGTGATTTCTTCCAGAGATTAAAATTTCATCAAATGTATCCAGA-TATTTTTAAAGTTGCA-TTTTCACAGC-AAACAAATTTCTAAGGACtgattgtttttttgtgtgtgtaattttgtttg-tttttttgGCTTT--TTTCTCCCTATTTTTAAATGTTCTGAGTAGGACTAGCA-TTAAAGCTTGGAAGGGGTAAAACGAGTCATGGCACTCCATCCTTTTATCATGCAGACTTT-ATAAAGTGCTCCAGTTCTTATGGTGTTTTCTGACCAGGATCTGTACCAAGCAGATGAACATGCCAAGATGTCTTCGTTC--TCCCTGGCTGCACATCCTCCTGTAGTCTTCATGCCGGCCTTCGTTTGACCTGTTTTTGGGAAGTTCTGCCTTTTCCT--TCTATTTTAATCTACACTCTGTTGCCACCATTACATATCCA
s panTro5.chr6              29527528  998 + 175400573 aataattgtta------------------atagtcattgAATTAttagtatatgacaagaactgagctatgtt------tgcaatgtacactctattccttaatttgtacactagttctatgagatgggtataattatgcttatttgaaagatgagaaaattgaagcacacaaagattaaatgacatctccaaagtcacacagctaatgaatggaatgactgggatttggaggaaatcccagtctTTTATAAATGTCTTTTATTAAACAACTAGAGAAAAACACAAGACAAATTTACTAAAAGATAAGAGTCAAAC-AAAAA-AAGAAATTTGGGATTGTAGGGAATGGAAAAATTTGCAATTGGAGTTATTCTTTAGAAATTAGATGATAAAGGAATTGTGTAATTTGGATGGGCAAAGAGCAGGATAGAGGCAATTTTGGTGGAAAAAATAGTATCAGTAATTAG-AAAATATGAGAATAAAGA--AGGGAGAGAGA-GGGAAAATGATTAAGTTTATATGTGCTGAGAATGATCCTGAGAGATTACAAATTCATATA-CATCCTCAAATTTCAAGGATTCAAATGTTTAAAACTCTTTCTGGTGATTTCTTCCAGAGATTAAAATTTCATCAAATGTATCCAGA-TATTTTTAAAGTTGCA-TTTTCACAGC-AAACAAATTTCTAAGAACTGATT-TTTGTGTGTGTGTGTAATTTTGTTTG-TTTTTTTGGCTTT--TTTCTCCCTATTTTTAAATGTTCTGAGTAGGACTAGCA-TTAAAGCTTGGAAGGGGTAAAACGAGTCGTGGCACTCCATCCTTTTATCATGCAGACTTT-ATAAAGTGCTCCAGTTCTTATGGTGTTTTCTGACCAGGATCTGTACCAAGCGGAT-AACATGCCAAGATGTCTTCGTTC--TCCCTGGCTGCACATCCTCCTGTAGTGTTCATGCCGGCCTTCGTTTGACCTGTTTTTGGGAAGTTCTGCCTTTTCCT--TCGATTTTAATCTATACTCTGTTGCCACCATTACATATCCA
i panTro5.chr6             I 376 C 0
s panPan2.chr6              29765814 1001 + 173848474 aataattgtta------------------atagtcattgaattattagtatatgacaagaactgagctatgtt------tgcaatgtacactctattccttaatttgtacactagttctatgagatgggtataattatgcttatttgaaagatgagaaaattgaagcacacaaagattaaatgacatctccaaagtcacacagctaatgaatggaatgactgggatttggaggaaatcccagtcttttATAAATGTCTTTTATAAAACAACTAGAGAAAAACACAAGACAAATTTACTAAAAGATAAGAGTCAAACAAAAAA-AAGAAATTTGGGATTGTAGGGAATGGAAAAATTTGCAATTGGAGTTATTCTTTAGAAATTAGATGATAAAGGAATTGTGTAATTTGGATGGGCAAAGAGCAGGATAGAGGCAATTTTGGTGGAAAAAATAGTATCAGTAATTAG-AAAATATGAGAATAAAGA--AGGGAGAGAGA-GGGAAAATGATTAAGTTTATATGTGCTGAGAATGATCCTGAGAGATTACAAATTCATATA-AATCCTCAAATTTCAAGGATTCAAATATTTAAAACTCTTTCTGGTGATTTCTTCCAGAGATTAAAATTTCATCAAATGTATCCAGA-TATTTTTAAAGTTGCA-TTTTCACAGC-AAACAAATTTCTAAGGACTGAtt-tttttgtgtgtgtgtaattttgtttgtttttttTGGCTTT--TTTCTCCCTATTTTTAAATGTTCTGAGTAGGAGTAGCA-TTAAAGCTTGGAAGGGGTAAAACAAGTCGTGGCACTCCATCCTTTTATCATGCAGACTTT-ATAAAGTGCTCCAGTTCTTATGGTGTTTTCTGACCAGGATCTGTACCAAGCGGATGAACATGCCAAGATGTCTTCGTTC--TCCCTGGCTGCACATCCTCCTGTAGTCTTCATGCCAGCCTTCGTTTGACCTGTTTTTGGGAAGTTCTGCCTTTTCCT--TCGATTTTAATCTATACTCTGTTGCCACCATTACATATCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5568624 1000 +   6154872 aataattgtta------------------atagtcattgaattattagtatatgacaagaactgagctatgtt------tgcaatgtacactctattccttaatttgtacactagttctatgagatgggtataattatgcttatttgaaagatgagaaaattgaagcacacaaagattaaatgacatctccaaagtcacacagctaatgaatggaatgtctgggatttggaggaaatcccagtcttttATAAATGTCTTTTATAAAACAACTAGAGAAAAACACAAGAGAAATTTACTAAAAGGTAAGAGTCAAAC-AAAAA-AAGAAATTTGGGATTGTAGGGAATGGAAAAATTTGCAATTGGAGTTATTCTTTAGAAATTATATGATAAAGGAATTGTGTAATTTGGGTGGGCAAAGAGCAGGATAGAGGCATTTTTGGTGTAAAAAATAGTATCAGTAATTAG-AAAATATGAGAATAAAGA--AGGGAGAGAGA-GGGAAAATGATTAAGTTTATATGTGCTGAGAATGATCCTGAGAGATTACAAATTCATATA-CATCCTCAAATTTCAAGGATTCAAATATTTAAAACTCTTTCTGGTGATTTCTTCCAGAGATTAAAATTTCATCAAATGTATCCAGA-TATTTTTAAAGTTGCA-TTTTCACAGC-AAACAAATTTCTAAGGACTGATT-TTTGTGTGTGTGTGTAATTTTGTTTGTTTTTTTTGGCTTT--TTTCTCCCTATTTTTAAATGTTCTGAGTAGGACTAGCA-TTAAAGCTTGGAAGGGGTAAAACGAGTTGTGGCACTCCATCCTTTTATCATGCAGACTTT-ATAAAGTGCTCCAGTTCTTATGGTGTTTTCTGACCAGGATCTGTACCAAGCGGATGAACATGCCAAGATGTCTTCGTTC--TCCCTGGCTGCACATCCTCCTGTAGTCTTCATGCAGGCCTTCGTTTAACCTGTTTTTGGGAAGTTCTGCCTTTTCCT--TCTATTTTAATCTACACTCTGTTGCCACCATTACATATCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74456875  987 + 122973662 aataattgtta------------------atagtcattgaattattagtatatgacaagaactgagctatgtt------tgcaatgtacactctattccttcatttgtacactagttctatgagatgggtataattatgctcatttgaaagatgagaaaattgaagcacacaaagattaaatgacatctccaaagtcacacagctaatgaatggaatgactgggatttggaGGAAATCCCAGTCTTTTATAAATGTCTTTTATAAAACAACTAGAGAAAAACACAAGACAAATTTACTAAAAGATAAGAGTCAAAC-AAAAA-AAGAAATTTGGGATTGCAGGAAATGGAAAAATTTACAATTGGAGTTATTCTTTATAAATTATATGATAAAGGAATTGTGTAATTTGGATGGGCAAAGAGCAGGATAGAGGCAATTTTGGTGGAAAAAATAGTATCAGTAATAAG-AAAATATGAGAATAAAGA--AGG--GAGAGA-GGGAAAATGATTAAGTTTATATGTGCTGAGAATGATCCTGAGGGATTAGAAATTCATATA-CCTCCCCAAATTTCAAGGATTCAAATATTTAAAACTCTTTCTGGTGATTTCTTCCAGAGATCAAAAGTTCATCAAATGTATCCAGA-TATTTTTAAAGTTGCA-TTTTTACAGC-AAACAAATTTCTAAGGACTGATTGTTTTTTTGTGTGTGTAATTTTGTTGG--TTTTTTGGCTTT--TTTCTCCCTGTTTTTAAATTTTCTGAGTAGGACTAGCA-TTAAAGCTTGGAAGG----------GTCCTGGCACTCCATCCTTTTATCATGCAGACTTT-ATAAAGTGCTCCAGTTCTTATGGTGTTTTCTGACCAGGATCTGTACCAAGCGGATGAACGTGCCAAAATGTCTTCGTTC--TCCCTGGCTGCTGACCCTCCTGTAGTCTTCATGCTGGCCTTCGTTTGACCTGTTTTTGGGACGTTCTGCCTTTTCCT--TCTATTTTAATCTACACTCTGTTGCCACCATTACATATCCA
i nomLeu3.chr1a            C 0 N 0
s rheMac8.chr4              29797032  991 + 172585720 AATAATCATTA------------------ATAGtcattgaattattagtataagacaagaactgagctatgtt------tgcaatgtacactctattccttaatttgtacagcagttc--tgagatgggtataattatgctcatttgaaagatgagaaaattgaagcacatgaagatt-aatgacatctccaaagtcacacagctgatgaatggaatgactgggatttggaggaaatcccagtctTTTATAAATGTCTTTTATAAAACAACTAGAGAAAAATAT--GACAAATTTACTAAAAGATAAGAGTCAAAC-AAAAACAAGAAATTTGGGATTGTAGGGAATGGAAAAATTTGCAATTGGAGTTATTCTTTAGAAATTATATGATAAAGGAATTGCATAATTTGGATGGGCAAAGAGCAGAATAGAGGCAATTTAAGTGGAAAAAATAGTATCAGTAATTAG-AAAATATGTGAATAAAGA--AGG----GAGA-GGGAAAATGATTAAGTTCATATGTGCTGAGAATGATCCTGAGGGACTAGAAATTCATATA-CATCCTCAAATTTCAAGGATTTAAATATTTAAAACTCTTTCTGGTGATTTCTTCCAGAGATTAAAGTTTCATCAGATTTATCCAGA-TACTTTTAAAGTTGCA-TTTTCACAGC-AAACAAATTTCTAAGGACtgattgtt--tgtgtgtgtgtaattttgtttgatttttctggctgt--ttTCTCCCTATTTTTAAATTTTCTGAGTAAGACTAGCA-TTAAAACTTGAAAGGGGTAAAACGAGTCCTGACACTCCATCCTTTTATCATGCAGACCTT-ATGAAGTGCTGCAGTTCTTACGGTGTTTTCTGACCATGATCTGTACAAAGCGGATGAACATGCCAAGATGCCTTTGCTC--TCCCTGGCTGCAGATCCTCCTGTAGCCTTCATGCTGGCCTTCGTTTGACCTGTTTGTGGGAAGTTCTGCCTTTTCCT--TCTGTTTTAATCTACACTCTGTCGCCACCATTAAATATCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29459331  994 - 170955103 AATAATCATTA------------------ATAGtcattgaattattagtataagacaagaactgagctatgtt------tgcaatgtacactctattccttaatttgtacagcagttc--tgagatgggtataattatgctcatttgaaagatgagaaaattgaagcacatgaagattaaatgacatctccaaagtcacacagctgatgaatggaatgactgggatttggaggaaatcccagtctTTTATAAATGTCTTTTATAAAACAACTAGAGAAAAATAT--GACAAATTTACTAAAAGATAAGAGTCAAAC-AAAAACAAGAAATTTGGGATTGTAGGGAATGGAAAAATTTGCAATTGGAGTTATTCTTTAGAAATTATATGATAAAGGAATTGCATAATTTGGATGGGCAAAGAGCAGAATAGAGGCAATTTAAGTGGAAAAAATAGTATCAGTAATTAG-AAAATATGTGAATAAAGA--AGG----GAGA-GGGAAAATGATTAAGTTCATATGTGCTGAGAATGATCCTGAGGGACTAGAAATTCATATA-CATCCTCAAATTTCAAGGATTTAAATATTTAAAACTCTTTCTGGTGATTTCTTCCAGAGATTAAAGTTTCATCAGATTTATCCAGA-TACTTTTAAAGTTGCA-TTTTCACAGC-AAACAAATTTCTAAGGACTGATTGTTTGTGTGTGTGTGTAATTTTGTTTGATTTTTCTGGCTGT--TTTCTCCCTATTTTTAAATTTTCTGAGTAAGACTAGCA-TTAAAACTTGAAAGGGGTAAAACGAGTCCTGACACTCCATCCTTTTATCATGCAGACCTT-ATGAAGTGCTGCAGTTCTTACGGTGTTTTCTGACCATGATCTGTACAAAGCGGATGAACATGCCAAGATGCCTTTGCTC--TCCCTGGCTGCAGATCCTCCTGTAGCCTTCATGCTGGCCTTCGTTTGACCTGTTTGTGGGAAGTTCTGCCTTTTCCT--TCTGTTTTAATCTACACTCTGTCGCCACCATTAAATATCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2445863  994 -   2996164 AATAATCATTA------------------ATAGtcattgaattattagtataagacaagaactgagctatgtt------tgcaatgtacactctattccttaatttgtacagcagttc--tgagatgggtataattatgctcatttgaaagatgagaaaattgaagcacatgaagattaaatgacatctccaaagtcacacagctgatgaatggaatgactgggatttggaggaaatcccagtctTTTATAAATGTCTTTTATAAAACAACTAGAGAAAAATAT--GACAAATTTACTAAAAGATAAGAGTCAAAC-AAAAACAAGAAATTTGGGATTGTAGGGAATGGAATCATTTGCAATTGGAGTTATTCTTTAGAAATTATATGATAAAGGAATTGCATAATTTGGATGGGCAAAGAGCAGAATAGAGGCAATTTAAGTGGAAAAAATAGTATCAGTAATTAG-AAAATATGTGAATAAAGA--AGG----GAGA-GGGAAAATGATTAAGTTCATATGTGCTGAGAATGATCCTGAGGGACTAGAAATTCATATA-CATCCTCAAATTTCAAGGATTTAAATATTTAAAACTCTTTGTGGTGATTTCTTCCAGAGATTAAAGTTTCATCAGATTTATCCAGA-TACTTTTAAAGTTGCA-TTTTCACAGC-AAACAAATTTCTAAGGACTGATTGTTTTTGTGTGTGTGTAATTTTGTTTGATTTTTCTGGCTGT--TTTCTCCCTATTTTTAAATTTTCTGAGTAAGACTAGCA-TTAAAACTTGAAAGGGGTAAAACGAGTCCTGACACTCCATCCTTTTATCATGCAGACCTT-ATGAAGTGCTGCAGTTCTTACGGTGTTTTCTGACCATGATCTGTACAAAGCGGATGAACATGCCAAGATGTCTTTGCTC--TCCCTGGCTGCAGATCCTCCTGTAGCCTTCATGCTGGCCTTCGTTTGACCTGTTTGTGGGAAGTTCTGCCTTTTCCT--TCTGTTTTAATCTACACTCTGTCGCCACCATTAAATATCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      210346  996 +    766320 aataatcatta------------------atagtcattgaattattagtataagacaagaactgagttatgtt------tgcaatgtacactctattccttaatttgtacagcagttctatgagatgggtataattatgctcatttgaaagatgagaaaattgaagcacatgaagattaaatgacatctccaaagtcatacagctgatgaatggaatgactgggatttggaggaaatcccagtcttttATAAATGTCTTTTATAAAACAACTAGAGAAAAATAT--GACAAATTTACTAAAAGATAAGAGTCAAAC-AAAAACAAGAAATTTGGGATTGTAGGGAATGGAAAAATTTGCAATTGGAGTTATTCTTTAGAAATTATATGATAAAGGAATTGCATAATTTGGATGGGCAGAGAGCAGGATAGAGGCAATTTAAGTGGAAAAACTAGTATCAGTAATTAG-AAAATATGTGAATAAAGA--AGG----GAGA-GGGAAAATGATTAAGTTTATATGTGCTGAGAATGATTCTGAGGGACTAGAAATTCATATA-CATCCTCAAATTTCAAGGATTTAAATATTTAAAACTCTTTCTGGTGATTTCTTCCAGAGATTAAAGTTTCATCAGATTTATCCAGA-TACTTTCAAAGTTGCA-TTTTCACAGC-AAACAAATTTCTAAGGACTGATTGTTTTTGTGTGTGTGTAATTTTGTTTGATTTTTCTGGCTGT--TTTCTCCCTATTTTTAAATTTTCTGAGTAAGACTAGCA-TTAAAACTTGAAAGGGGTAAAACGAGTCCTGACACTCCATCCTTTTATCATGCAGACTTT-ATGAAGTGCTGCAGTTCTTACGGTGTTTTCTGACCATGATCTGTACAAAGTGGACGAACGTGTCAAGATGTCTTTGCTC--TCCCTGGCTGCAGATCCTCCCGTAGCCTTCATGCTGGCCTTCGTTTGACCTGTTTGTGGGAAGTTCTGCCTTTTCCT--TCTGTTTTAATCTACACTCTGTTGCCACCATTAAATATCCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28722568  996 -  71996105 AATAATCATTA------------------ATAGTCATTGAATTATTAGTATAAGACGAGAACTGAGCTATGTT------TGCAATGTACActctattccttaatttgtacagcagttctatgagatgggtataattatgctcatttgaaagatgagaaaattgaaacacacgaagattaaatgacatctccaaagtcacacagctgatgaatggaatgactgggatttggaggaaatcccagtcttttataaatgtcttttataaaacaactagagaaaaacat--ggcaaatctactaaaagataagagtcaaac-AAAAACAAGAAATTTGGGATTGTAGGGAATGGAAAAATTTGCAATTGGAGTTATTCTTTAGAAATTATATGATAAAGGAATTGCGTAATTTGGACGGGCAAAGAGCAGGATAGAGGCAATTTAGGTGGAAAAAATATTATCAGTAATTAG-AAAATATGTAAATAAAGA--AGG----GAGA-GGGAAAATGATTAAGTTTATATGTGCTGAGAATGATCCTGAGGGACTAGAAAGTCATATA-CATCCTCAAATTTCAAGGATTTAAATATTTAAAACTCTTTCTGGTGATTTCTTCCAGAGATTAAAGTTTCATCAGATTTATCCAGA-TACTTTTAAAGTTGCA-TTTTCACAGC-AAACAAATTTCGAAGGACTGATTGTTTTTTTGTGTGCGTAATTTTGTTTGATTTTTCTGGCTTT--TTTCTCCCTATTTTTAAATTTTCTGAGTAGGACTAGCA-TTAAAACTTGAAAGGGGTAAAACGGGTCCTGACACTCCATCCTTTTATCATGCAGACTTT-ATGAAGTGCTGCAGTTCTTACGGTGTTTTCTGACCATGATCTGTACAAAGCGGATGAACATGCCAAGATGTCTTTGCTC--TCCCTGGCTGCAGATCCTCCTGTAGTCTTCATGCTGGCCTTCGTTTGACCTGTTTGTGGGAAGCTCTGCCTTTTCCT--TCAGTTTTAATCTACACTCTGTTGCCACCATTAAATATCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      183570  996 -    352859 AATAATCATTA------------------GTGGtcattgaattattagtataagacaagaactgagctatgtt------tgcaatgtacactctattccttaatttgtacagcagttctatgagatgggtataattatgctcatttgaaagatgagaaaattgaagcacatgaagattaaatgacatctccaaagtcacacagctgatgaatggaatgactgggatttggaggaaatcccagtctTTTATAAATGTCTTTTATAAAACAACTAGAGAAAAATAT--GACAAATTTACTAAAAGATAAGAGTCAAAC-AAAAACAAGAAATTTGGGATTGTAGGGAATGGAAAAATTTGCAATTGGAGTTATTCTTTAGAAATTATATGATAAAGGAATTGCATAATTTGGATGGGCAAAGAGCAGGATAGAGGCAATTTAAGTGGAAAAACTAGTATCAGTAATTAG-AAAATATGTGAATAAAGA--AGG----GAGA-GGGAAAATGATTAAGTTTATATGTGCTGAGAATGATCCTGAGGGACTAGAAATTCATATA-CATCCTCAAATTTCAAGGATTTAAATATTTAAAACTCTTTCTGGTGATTTCTTCCAGAGATTAAAGTTTCATCAGATTTATCTAGA-TACTTTCAAAGTTGCA-TTTTCACAGC-AAACAAATTTCTAAGGACTGATTGTTTTTGTGTGTGTGTAATTTTGTTTGATTTTTCTGGCTGT--TTTCTCCCTATTTTTAAATTTTCTGAGTAAGACTAGCA-TTAAAACTTGAAAGGCGTAAAACGAGTCCTGACACTCCATCCTTTTATCGTGCAGACTTT-ATGAAGTGCTGCAGTTCTTACGGTGTTTTCTGACCATGATCTGTACAAAGCGGATGAACGTGTCAAGATGTCTTTGCTC--TCCCTGGCTGCAGATCCTCCTGTAGTCTTCATGCTGGCCTTCGTTTGACCTATTTGTGGGAAGTTCTGCCTTTTCCT--TCTGTTTTAATCTACAGTCTGTCGCCACCATTAAATATCCA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2352155  986 -   3067355 aatagtcatta------------------atagtcattgaatgattagtataagacaagaactgagctatatt------tgcaatgtacactctattccttaatttgtacagcagttctatgagatgggtataattatgctcatttgaaaaatgagaaaattgaggcacatgaagattaaatgacatctccaaagtcacacagctgatgaatggaatgactgggatttggaggaaatccta-------------gtcttttATAAAACAACTAGAGAAAAACAT--GACAAATTTACTAAAAGATAAGAGTCAAAC-AAAAACAAGAAATTTGGGATTATAGGGAATGGAAAAATTTGCAATTGGAGTTATTCTTTAGAAATTATATGATAAAGGAATTATGTAATTTGGATGGGCAAAGAGCAGGGTAGAGGCAATTTAGGTGGAAAAATTAGTATCAGTAATTAG-AAAATATGTGAATAAAGA--AGGGAGAGAGA-GGGAAAATGATTAAGTTTATATGTGCTGAGAATGATCCTGAGGGACTAGAAATTCATATA-TATCCTCAAATTTCAAGGATTTAAATATTTAAAACTCTTTCTGGTGATTTCTTCCAGAGATTAAAGTTTCATCAGATTTATCCAGA-TACTTTTAAAGTTGCA-TTTTCACAGC-AAACAAATTTCTAAGGACTGATT-TTTTTGTGTGTGCGTAACTTTGTTTGATTTTTCTGGCTTT--TTTCTCCCTATTTTTAAATTTTCTGAGTAGGACTAGCA-TTAAAACTTGAAAGGGGTAAAACGAGTCCTGACACTCCATCCTTTTATCATGCAGACTTT-ATGAAGCGCTGCAGTTCTTACGGTGTTTTCTGACCATGATCTGTATAAAGCGGATGAACATACCAAGATGTCTTTGCTC--TCCCTGGCTGCAGATCCTCCTGTAGTCTTCATGCTGGCCTTCGTTTGACCTGTTTGTGGGAAGCTCTGCCTTTTCCT--TCTGTTTTAATCTACACTCTGTTGCCACCATTAAATATCCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr6             126566488  996 - 158406734 AATAACTATTA-AACTaataatactgttcatagttattgaattgttagtatatgacaagaacagagctatgtc------tgcaacttatactctattccttaatatgtacactagttctatgagataggtataattatgctcattttaaagatgagaaaattgaagcacacaaagattaaatcacatctccaaagtcacacagctactgaatggaatgactgggatttggaGGAACTCTCAGTCTTTTATAAATTTCTTTTACAAAACAGCCAGAGAAAAACACACGGCAAATTTGCTAAAAGCTAGGAGTCAAAC-AAAA--AAGAAATTTGGGATCGTAGAGAATGGAAAACTTTGCAATTGGAATTATTCTTTAGAAATTATATGATAAAGGAATTGTTTAACTTGAATAGG-GAAGAGCAGGATAGAGGCAATTTAGGTGGTAGAAACAGTATCAGTAATTAATAAGATATGAGAATAAAGAAGAGA----GAGAGGGGGAAATGATTAAGCTTATATGTGCTA-----------GAAGGATTAGAAATTCATATA-CGTTCTCAAATTTCAAATATTCAAATACTC-AAGCTCTTTCTGGTGATTTGTTCCAGAGGTTAAAATTCCATCAAATTTATCCAAA-TATTTTTAAAGTTGCATTTTTTACAAC----CAAATTACTAAGGCCCGAT--TTTTTGTGTATGTGTAATTTTGTTCAAATT-------TTTTCTTTCTCCCTATTTTTAGATTTTCTGAGTAGGACCATCA-TTAAAGCCTGAAAGGGGTAAAATGAGTCCTAGCACTGCAGCCTTTCATCATGCAGACTTTAATGAAGTACTCTAGTTCTCATGGTG-TTTCTGATCAGGATCAGCCAAAAGCGGATGAACACATCAAGATGTCTTCACTC--TCCCTGGCTGCAGACCCTCCTCCAGTCTTCATACTGGTCTTTGTTTGACCCA-TTGTGGGAAGCTCTGCCTTTTCCCAATCTATTTTACTCTACACTCTGTTGCCACCGTTAAATATCCA
i calJac3.chr6             I 18 C 0
s cebCap1.NW_016107522v1      188987 1005 +   3820305 AATAACTATTATAACTGataataatgttcatagttattgaagtattagtatatgacaagaacagagctatgtc------tgcaacttttactctattccttaatatgtacactagttctatgagataggtataattatgctcatttgaaagac-agaaaattgaagcacacaaagatgaaatcacatctccaaagtcacacagctactgaatggaatgacaaggatttggaggaactctcagtcTTTTATAAATTTCTTTTACAAAACAACTAGAGAAAAACACACGGCCAATTTGCTAAAAGATAGGAGTCAAAC-AAAA--AAGAAATTTGGGATTGTAGAGAATGGAAAAATGTGCAATTGGAATTATTCTTTAGAAATTATATGATAAAGGAATTGTTTAACTCGGATGCG-GAAGAGCAGGATAGAGGCAATTTAGGTGGTAGATACAGTATCAGTAATTAGCAAGATACAAGAATAAAGA--AGG----GAGGGGGGAAAATGATTAAGCTTATATGTGCTG-----------GAAGGATTAGAAATTCATCTA-CGTTCTCAAATTTCAAATATTCAAATACTT-AAGCTCTTTCTGGTGATTTCTCTCAGAGGTTAAAATTCCATCAAGTTTATCCAGA-TGTTTTTAAAGTTGCATTTTTCACAACAAAACAAATTTCTAAGGCCCGAT--TTTTTGTGTATGTGTCATTTTGTTCGAATTTTTCGGCTTTTTTTTCACCCTATTTTTAGATTCTCTGAGTAGGACCATCA-TTAAAGCTTGGGAGGGGTAAAATGAGTCCTAGCACTCCATCCTTTCATCATGCAGACTTT-ATGAAGTACTCTAGTTCTCATGGTG-GTTCTGATCAGGATTAGCACAAAGCGGATGTACACACCAAGATGTCTTCACTC--TCCCTGGCTGCAGATCCTCCTTCAGTCTTCATGCTGGTCTTCGTTTGACCCGTTTTTTGGAAGCTCTGCCTTTTCCCAACCTGTTTGACTCTACACTCTGTTGCCACCGTTAAATATCCA
i cebCap1.NW_016107522v1   I 19 C 0
s otoGar3.GL873742           1944274  979 -   2232465 AAAAATAATTA------------------ATTGttattgaattactagtatatgataagaactgagctatgttttcaccttcaatttacactatatcacttaatctgtggattagccccatggaatgagaatagttatgctaattttaaagatgagaaaattgaagc-----aaaattaaatgacatttccaatgtcaccccattagtgactgAAATGTGTGAGATTTTGAGGAAGTAGGA---------AAATGACTTTTATAAAACAAGTAGAAAAGAATACAGGACAAATTTACTAAAACAGAAGAGTCAAAA-CAAAA-AGGAA--TCAGGGTTGTAAAGAATAGAAAAATGATC-ATAGGAGTTATTTTTCAGAAATTATATCATAAAGGAACTGTGCAATTCGAGTATGTGAACAGTGGAAGAGAGGCAGTC--AGAGGTAGGAGCAGGCTACGTAGTGAGTAAGACATGAGAACACAGA--AAG-----ACA-AGGGATGTGATTAAATTTACAAGTGCTGACAATAATCTTGAGGGATTAGAAATTCATATGTTAGCTCCAAGTTTCAAGGATACAAGTATTTTAAACTCTTTCTGATGATTTTTCTCAGAAGTTAAAATTTCATCCAATTTATCCAGATTATTTGTACA--TGCATTTTTCACAGA-AAACAAATTTCTAAGGCCTAAT--TTTTTATGTGTGTGTTATCTTGCTTGAATTTTTTAA-TGT--TTTCCTATTTTTTTTAA----TTTGAGTAAGACTAACATTTAAAACCTGGAATGGGTAAAATGAGTCCTAATGCCCC-TTCTTTCATCACACAGATTTT-ATGAAGTGCTCCAG-TCCCATGATG-CTTCTGACCAGGATTAGTGCGATGCAGACGAACACACCAAGATGCCGTGGCTCAGTCTCT-GTTACAGATCCACCTGCCTTCTTCATGTTGCCCTTTGTTTGGCCTGTTTGGGGGAAGCTCTGCATTTTCCCAGTCTGTTTTAATCTACATTTTGTTGTCATGATTAAATATTCA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             26204327 64688 +  26524999 T

a score=1434114.000000
s hg38.chr6_GL000254v2_alt           556076 176 +   4827813 TG-CATGTAGAGTTGATGGTAGTA-TACTAAAACTTTTTAGAAGAGAAGATATGAAAACCCAAATGGAGTGAATAGCTAACCAGAAGACATATATTAAATAAGCAAAA-TTCCCAACTATGTTGCTGGTGTGGTATTTATTCTTTTCTCAGTAATCTTTCAATATTACATTGATGATGT
s panTro5.chr6                     29528526 177 + 175400573 TGACATGTAGAGTTGATGGTAGTA-TACTAAAACTTTTTAGAAGAGAAGATATGAAAACCCAAATGGAGTGAATAGCTAACCAGAAGACATATATTAAATAAGCAAAA-TTCCCAACTATGTTGCTGATGTGGTATTTATTCTTTTCTCAGTAATCTTTCAATATTACATTGATGATGT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29766815 177 + 173848474 TGACATGTAGAGTTGATGGTAGTA-TACTAAAACTTTTTAGAAGAGAAGATATGAAAACCCAAATGGAGTGAATAGCTAACCAGAAGACATATATTAAATAAGCAAAA-TTCCCAACTATGTTGCTGGTGTGGTATTTATTCTTTTCTCAGTAATCTTTCAATATTACATTGATGATGT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5569624 177 +   6154872 TGACATATAGAGTTGATGGTAGTA-TACTAAAACTTTTTCGAAGAGAAGATATGAAAACCCAAATGGAGTGAATAGCTAACCAGAAGACATATATTAAATAAGCAAAA-TTCCCAACTATGTTGCTGGTGTGGTATTTATTCTTTTCTCAGTAATCTTTCAATATTACATTGATGATGT
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      3233 177 +     39990 TGACATGTAGAGTTGATGGTAGTA-TACTAAAACTTTTTAGAAGAGAAGATGTGAAAACCCAAATGGAGTGAATAGCTAACGAGAAGACATATATTAAGTAAGCAAAA-TTCCCAACTATGTTGCTGGTGTGGTATTTATTCTTTTCTCAGTAATCTTTCAATATTACATTGATGATGT
i nomLeu3.chr1a_JH996256_1_random N 0 C 0
s rheMac8.chr4                     29798023 177 + 172585720 TG-GATGTAGAGTTGATGGTGGTACTAATAAAACTGTTTAGAAGAGAAAATATGAAAACTCAAATGAAGTGAGTAGCTAACCAGAAGACATATATTAAAGAAGCAAAA-TTCCCAACTATGTTGCTGGTGTGGTATTTATTCTTTTCTTAGTAATCTTTCAATATTACATTGATGATGT
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29460325 177 - 170955103 TG-GATGTAGAGTTGATGGTGGTACTAATAAAACTGTTTAGAAGAGAAAATATGAAAACTCAAATGAAGTGAGTAGCTAACCAGAAGACATATATTAAAGAAGCAAAA-TTCCCAACTATGTTGCTGGTGTGGTATTTATTCTTTTCTTAGTAATCTTTCAATATTACATTGATGATGT
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2446857 177 -   2996164 TG-AATGTAGAGTTGATGGTGGTACTAATAAAACTGTTTAGAAGAGAAAATATGAAAACTCAAATGAAGTGAGTAGCTAACCAGAAGACATATATTAAAGAAGCAAAA-TTCCCAACTATGTTGCTGGTGTGGTATTTATTCTTTTCTTAGTAATCTTTCAATATTACATTGATGATGT
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             211342 177 +    766320 TG-AATGTAGAGTTGATGGTGGTACTAATAAAACTGTTTAGAAGAGAAAATATGAAAACTCAAATGAAGTGAGTAGCTAACCAGAAGACATATATTAAAGAAGCAAAA-TTCCCAACTATGTTGCTGGTGTGGTATTTATTCTTTTCTTAGTAATCTTTCAATATTACATTGATGATGT
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28723564 177 -  71996105 TG-AATGTAGAGCTGATGGTGGTACTAATAAAACTGTTTAGAAGAGAAAATATGAAAAGTCAAATGAAGTGAGTAGCTAACCAGAAGACATATATTAAAGAAGCAAAA-TTCCCAACTATGTTGCTGGTGTGGTATTTAGTCTTTTCTTAGCAATCTTTCAATATTACATTGATGATGT
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             184566 177 -    352859 TG-AATGTAGAGTTGATGGTGGTACTAATAAAACTGTTTAGAAGAGAAAATATGAAAACTCAAATGAAGTGAGTAGCTAACCAGAAGACACATATTAAAGAAGCAAAA-TTCCCAACTATGTTGCTGGTGTGGTATTTATTCTTTTCTTAGTAATCTTTCAATATTACATTGATGATGT
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2353141 177 -   3067355 TG-AATGTAGAGTTGATGGTGGTACTAATAAAACTGTTTAGAAGAGAAAATATGAAAACTCAAATGAAGTGAATAGCTAACCAGAAGGCATATATTAAAGAAGCAAAA-TTCCCAAATATGTTGTTGGTGTGGTATTTATTATTTTCTTAGTAATCTTTCAATATTACATTGATGATGT
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126567484 177 - 158406734 TGACAGGTAGAGTTGATGGTAGTATTAATAAAACTTTTTAGAGGAGAAGATATGAAAACCCAAATGGAGTGAATACCTAA-CATTAGACATACATTAAAGAAGCAAAA-TTCCCAACTGTGTTGCTGGTGTGGCATTTATTCTTTCCCCAGTAATCTTTCAATATTACATTGATGGTGC
i calJac3.chr6                    C 0 I 2245
s cebCap1.NW_016107522v1             189992 178 +   3820305 TGACAGGTAGAGTTGATGGTAGTACTAATAAAACTTTTTAGAAGAGAAGATATGAAAACCCAGATGGAGTGAATACCTAACCAGAAGATATATATTAAAGAAGCAAAA-TTCCCAACTATGTTGCTGGTGTGGCATTTATTCTTTTCTCAGTAATCTTTCAATATTACGTTGATGGTGT
i cebCap1.NW_016107522v1          C 0 C 0
s otoGar3.GL873742                  1945253 176 -   2232465 TGATATGTAGGATTATTGGTAGTACTACCAAAACATTTTAGAAGAGAAGATGTTGAAATCCAAAGAGTGTGATTAGGTAACCAGAAGACAACCATGAAATAAGCAGAATTTCTCAACTATGTTGCTGGTGCTCTATTTA---TTTTCTTGGCAATCATTCAATATTACAATAACAATGT
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T

a score=17926670.000000
s hg38.chr6_GL000254v2_alt           556252 2102 +   4827813 TGTCTCCACATTTCATCATAATCAGGATGTAGATGCAAATG---ATATTTTACTGTAATGAAGATACAGATGCCGATTAGAGCAAAAATGAAAATTTCATCTTGGCATCTCTGATCTCTAATTCTCAGTGGCTTCCTCCTACTGTTGATG----TCTATCCCTAACTGTGGGTATTTAGAGGTCTCAGCTGGAATTTCACCTCCCAGTGCTAACATGTGGATCAACAATCAAAGCTCGCTAGATGATTTTATCCTATTGGGATTTTCTGACCGTCCCTGGCTAGAGACACCCCTC--TGTAATCTTTCTGGTGGCCTACATCTTTTCCCTATTTGGAAATATCTCCATTATCCTAGTTTCCCATCTGGATCCCCAGCTTGACAGTCCCATGTACTTTTTTGTCTCTAATCTATCCTTTCTGGACCTCTGCTATACCACCAGCACTGTCCCACAGATGCTGGTCAACCTCCGGGGACCAGAAAAGACCATTAGCTATGGGGGTTGTGTTGCCCAACTCTATATATTTTTGGCCCTGGGTTCTACTGAATGCATACTTCTAGCCATCATGGCCTTTGACCGTTACGCTGCCATTTGCAAGCCCCTTCACTACCCAGTCATCATGAACCATAGACGCTGTATCCACATGGCTGCTGGCACTTGGATCAGTGGCTTTGCTAACTCCCTTGTCCAGTCCACTCTCACAGTGGTGGCCCCAAGATGTGGACAGAGGGTGTTGGACCATTTCTTCTGTGAAGTTCCAGCCCTTTTGAAACTAGCCTGTATTGATATTCGTGTGAATGAAATGGAGCTCAATGTACTAGGCGCTTTGCTTCTCCTGATGCCACTCACCCTCATCCTGGGCACTTATGTGTTCATTGCTCAGGCAGTAATGAGAATCTGCTCTGCTGAAAGTCGCTGGAAGGCTTTCAATACCTGTGCCTCACATTTGCTGGTGGTCTCCCTCTTCTACTTCACAGCCATCAGTATGTATGTCCAGCCTCCCTCTAGCTATTCTCATGACCGGGGGAAGATCATGGCTCTCTTTTATGGCATTGTCACACCCACCCTCAACCCATTCATCTACACATTGAGAAACAAGGATGTGAAAGCTGCCCTGAGAAGGTCACTGACTAAAGAGTTTTGGATTAAGACAAGATGATATCTGAAAAGAAGTCCTAAGAAGCGAGGATAGATGTGTTTGACTTTCA-AAAAGATGTTGGACATGGAATTGATGAGGGAACAGTAT-CAAGTGACACAAAGTTTACAAGTGGAACAAGACTAAGAAAAAAACAATTAACTCTTGGTAAAATCTACATAGCATTTTTTCACTTACGAGACTATCTGCTTTACAATATTGGATTCCATCAAGTCAGTC--TTTTTTCTCCCTATTCCTAATGACTAGCTAATCTAGTTAAAGTAAGGGAAAATGGTATAATAGCTAGAGAAAAAGATACTGAGAAAGTTTAGGAAATATATTTAGCATAAATTGTTTATAAATGAATCCCAATTAAATTAGAAATGATCCCAACTCTTAGAAAAACATGCCAGTACTATCGTGAGGTAATTTTGATCAACATGTATTGCCACCATTTAGCCATCTTCTAACATTCGATGTCCAATTATATCACCCTCAAATGCTTTTGTAAGGTCTCACAGGCAAGTAAAATCAAGAGACAATTAGTTCAAAAACAT-TAAGATGGAATTATGGAAAGAGAAATTAATGAACAAATTTAGAGGTGATGATTTTAAATATATTTTTTTTGCCATGAATTCTTTTAAATACAA-ATTTTTTTTGCCATAAATGTTTTGCCTTAGTCAATCTTATGCTCTTGTGGTACACAACAATGAGGCCTAGGTCAATGCAAATAGAACTTACTCTG-GGGGGAAAGATGAACAGTGAGATGCTTTGGATAGTGATCAGCAGGGGAAAAATCTGAGGTGG-AAAAAATTCTAATTTAGGGACACAAACTCAGTGGGAATTTACATGTTTTGACAAGGCAGCTTTCTTCACCACTTGACTGGGTAATTTAGTCCTATTTCAGTGTGGGGGTTTGAGAATACCATGTGGAATTC-AAAACTTTGGTTGATCTATTATCTTTATTTAG---AA----AAAA
s panTro5.chr6                     29528703 2101 + 175400573 TGTCTCCACATTTCATCATAATCAGGATGTAGATGCAAATG---ATATTTTACTGTAATGAAGATACAGATGCCGATTAGAGCAAAAATGAAAATTTCATCTTGGCATCTCTGATCTCTAATTCTCAGTGGCTTCCTCCTACTGTTGATG----TCTATCCCTAACTGTGGGTATTTAGAGGTCTCAGCTGGAATTTCACCTCCCAGTGCTAACATGTGGATCAACAATCAAAGCTCGCTAGATGATTTTATCCTATTGGGATTTTCTGACCGTCCCTGGCTAGAGACACCCCTC--TGTAATCTTTCTGGTGGCCTACATCTTTTCCCTATTTGGAAATATCTCCATTATCTTAGTTTCCCATCTGGATCCCCAGCTTGACAGTCCCATGTACTTTTTTGTCTCCAATCTATCCTTTCTGGACCTCTGCTATACCACCAGCACTGTCCCACAGATGCTGGTCAACCTCCGGGGACCAGAAAAGACCATTAGCTATGGGGGTTGTGTTGCCCAACTCTATATATTTTTGGCCCTGGGTTCTACTGAATGCATACTTCTAGCCATCATGGCCTTTGACCGTTACGCTGCCATTTGCAAGCCCCTTCACTACCCAGTCATCATGAACCATAGACGCTGTATCCACATGGCTGCTGGCACTTGGATCAGTGGCTTTGCTAACTCCCTTGTCCAGTCCACTCTCACAGTGGTGGCCCCAAGATGTGGACAGAGGGTGTTGGACCATTTCTTCTGTGAAGTTCCAGCCCTTTTGAAACTAGCCTGTATTGATATTCGTGTGAATGAAATGGAGCTCAATGTACTAGGCGCTTTGCTTCTCCTGGTGCCACTCACCCTCATCCTGGGCACTTATGTGTTCATTGCTCAGGCAGTAATGAGAATCTGCTCTGCTGAAAGTCGCTGGAAGGCTTTCAATACCTGTGCCTCACATTTGCTGGTGGTCTCCCTCTTCTACTTCACAGCCATCAGTATGTATGTCCAGCCTCCCTCTAGCTATTCTCATGACCGGGGGAAGACCATGGCTCTCTTTTATGGCATTGTCACACCCACCCTCAACCCATTCGTCTACACATTGAGAAACAAGGATGTGAAAGCTGCCCTGAGAAGGTCACTGACTAAAGAGTTTTGGATTAAGACAAGATGATATCTGAAAAGAAGTCCTAAGAAGCGAGGATAGATGTGTTTGACTTTCA-AAAAGATGTTGGACATGGAATTGATGAGGGAACAGTAT-CAAGTGACACAAAGTTTACAAGTGGAACAAGACTAAGAAAAAAACAATTAACTCTTGGTAAAATCTACATAGCATTTTTTCACTTACGAGACTATCTGCTTTACAATATTGGATTCCATCAAGTCAGTC--TTTTTTCTCCCTATTCCTAATGACTAGTTAATCTAGTTAAAGTAAGGGAAAATGGTATAATAGCTAGAGAAAAAGATACTGAGAAAGTTTAGGAAATATATTTAGCATAAATTGTTTATAAATGAATCCCAATTAAATTAGAAATGATCCCAACTCTTAGAAAAACATGCCAGTACTATCGTGAGTTAATTTTGATCAACATGTATTGCCACCATTTAGCCATCTTCTAACATTCGATGTCCAATTATATCACCCTCAAATGCTTTTGTAAGGTCTCACAGGCAAGTAAAATCAAGAGACAATTAGTTCAAAAACAT-TAAGATGGAATTATGGAAAGAGAAATTAATGAACAAATTTAGAGGTGATGATTTTAAATATATTTTTTTTGCCATGAATTCTTTTAAATACAA--TTTTTTTTGCCATAAATGTTTTGCCTTAGTCAATCTTATGCTCTTGTGGTACACAACAATGAGGCCTAGGTCAATGCAAATAGAACTTACTCTG-GGGGGAAAGATGAACAGTGAGATGCTTTGGACAGTGATCAGCAGGGGAAAAACCTGAGGTGG-AAAAAATTCTAATTTAGGGACACAAACTCAGTGGGAATTTACATGTTTTGACAAGGCAGCTTTCTTCACCACTTGGCTGGGTAATTTAGTCCTATTTCAGTGTGGGGGTTTGAGAATACCATGTGGAATTC-AAAACTTTGGTTGATCTATTATCTTTATTTAG---AA----AAAA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29766992 2099 + 173848474 TGTCTCCACATTTCATCATAATCAGGATGTAGATGCAAATG---ATATTTTACTGTAATGAAGATACAGATGCCGATTAGAGCAAAAATGAAAATTTCATCTTGGCATCTCTGATCTCTAATTCTCAGTGGCTTCCTCCTACTGTTGATG----TCTATCCCTAACTGTGGGTATTTAGAGGTCTCAGCTGGAATTTCACCTCCCAGTGCTAACATGTGGATCAACAATCAAAGCTCGCTAGATGATTTTATCCTATTGGGATTTTCTGACCGTCCCTGGCTAGAGACACCCCTC--TGTAATCTTTCTGGTGGCCTACATCTTTTCCCTATTTGGAAATATCTCCATTATCCTAGTTTCCCATCTGGATCCCCAGCTTGACAGTCCCATGTACTTTTTTGTCTCCAATCTATCCTTTCTGGACCTCTGCTATACCACCAGCACTGTCCCACAGATGCTGGTCAACCTCCGGGGACCAGAAAAGACCATTAGCTATGGGGGTTGTGTTGCCCAACTCTATATATTTTTGGCCCTGGGTTCTACTGAATGCATACTTCTAGCCATCATGGCCTTTGACCGTTACGCTGCCATTTGCAAGCCCCTTCACTACCCAGTCATCATGAACCATAGACGCTGTATCCACATGGCTGCTGGCACTTGGATCAGTGGCTTTGCTAACTCCCTTGTCCAGTCCACTCTCACAGTGGTGGCCCCAAGATGTGGACAGAGGGTGTTGGACCATTTCTTCTGTGAAGTTCCAGCCCTTTTGAAACTAGCCTGTGTTGATATTCGTGTGAATGAAATGGAGCTCAATGTACTAGGCGCTTTGCTTCTCCTGGTGCCACTCACCCTCATCCTGGGCACTTATGTGTTCATTGCTCAGGCAGTAATGAGAATCTGCTCTGCTGAAAGTCGCTGGAAGGCTTTCAATACCTGTGCCTCACATTTGCTGGTGGTCTCCCTCTTCTACTTCACAGCCATCAGTATGTATGTCCAGCCTCCCTCTAGCTATTCTCATGACCGGGGGAAGACCATGGCTCTCTTTTATGGCATTGTCACACCCACCCTCAACCCATTCGTCTACACATTGAGAAACAAGGATGTGAAAGCTGCCCTGAGAAGGTCACTGACTAAAGAGTTTTGGATTAAGACAAGATGATATCTGAAAAGAAGTCCTAAGAAGCGAGGATAGATGTGTTTGACTTTCA-AAAAGATGTTGGACATGGAATTGATGAGGGAACAGTAT-CAAGTGACACAAAGTTTACAAGTGGAACAAGACTAAGAAAAAAAC----AACTCTTGGTAAAATCTACATAGCATTTTTTCACTTACGAGACTATCTGCTTTACAATATTGGATTCCATCAAGTCAGTC--TTTTTTCTCCCTATTCCTAATGACTAGTTAATCTAGTTAAAGTAAGGGAAAATGGTATAATAGCTAGAGAAAAAGATACTGAGAAAGTTTAGGAAATATATTTAGCATAAATTGTTTATAAATGAATCCCAATTAAATTAGAAATGATCCCAACTCTTAGAAAAACATGCCAGTACTATCGTGAGTTAATTTTGATCAACATGTATTGCCACCATTTAGCCATCTTCTAACATTCGATGTCCAATTATATCACCCTCAAATGCTTTTGTAAGGTCTCACAGGCAAGTAAAATCAAGAGACAATTAGTTCAAAAACAT-TAAGATGGAATTATGGAAAGAGAAATTAATGAACAAATTTAGAGGTGATGATTTTAAATATATTTTTTTTGCCATGAATTCTTTTAAATACAATTTTTTTTTTGCCATAAATGTTTTGCCTTAGTCAATCTTATGCTCTTGTGGTACACAACAATGAGGCCTAGGTCAATGCAAATAGAACTTACTCTG-GGGGGAAAGATGAACAGTGAGATGCTTTGGACAGTGATCAGCAGGGGAAAAACCTGAGGTGG-AAAAAATTCTAATTTAGGGACACAAACTCAGTGGGAATTTACATGTTTTGACAAGGCAGCTTTCTTCACCACTTGACTGGGTAATTTAGTCCTATTTCAGTGTGGGGGTTTGAGAATACCATGTGGAATTC-AAAACTTTGGTTGATCTATTATCTTTATTTAG---AA----AAAA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5569801 2103 +   6154872 TGTCTCCACATTTCGTCATAATCAGGATGTAGATGCAAATG---ACATTTTACTGTAATAAAGATACAGATGCAGATTAGAGCAAAAATGAAAATTTCATCTTGGCATCTCTGATCTCTAATTCTCAGTGGCTTCCTCCTACTGTTGATG----TCTATCCCTAACTGTGGGTATTTAGAGGTCTCAGCTGGAATTTCACCTCCCAGTGCTAACATGTGGATCAACAATCAAAGCTCGCTAGATGATTTTATCCTATTGGGATTTTCTGACCGTCCCTGGCTAGAGACACCCCTCTTTATAATCTTTCTGGTGGCCTACATCTTTTCCCTATTTGGAAATATCTCCATTATCCTAGTTTCCCATCCGGATCCCCAGCTTGACAGTCCCATGTACTTTTTTGTCTCCAATCTATCCTTTCTGGACCTCTGCTATACCACCAGCACTGTCCCACAGATGCTGGTCAACCTCTGGGGACCAGAAAAGACCATTAGCTATGGGGGTTGTGTTGCCCAACTCTATATATTTTTGGCCCTGGGTTCTACTGAATGCATACTTCTAGCCATCATGGCCTTTGACCGTTACGCTGCCATTTGCAAGCCCCTTCACTACCCAGTCATCATGAACCATAGACGCTGTATCCACATGGCTGCTGGCACTTGGATCAGTGGCTTTGCTAACTCCCTTGTCCCGTCCACTCTCACAGTGGTGGCCCCAAGATGTGGACAGAGGGTGTTGGACCATTTCTTCTGTGAAGTTCCAGCCCTTTTGAAACTAGCCTGTATTGATATTCGTGTGAATGAAATGGAGCTCAATGTACTAGGCGCTTTGCTTCTCCTGGTGCCACTCACCCTCATCCTGGGCACTTATGTGTTCATTGCTCAGGCAGTAATGAGAATCTGCTCTGCTGAAAGTCGCTGGAAGGCTTTCAATACCTGTGCCTCACATTTGCTGGTGGTCTCCCTCTTCTGCTTCACAGCCATCAGCATGTATGTCCAGCCTCTCTCTAGCTATTCTCATGACCGGGGGAAGATCATGGCTCTCTTTTATGGCATTGTCACACCCACCCTCAACCCATTCATCTACACATTGAGAAACAAGGATGTGAAAGCTGCCCTGAGAAGGTCACTGACTAAAGAGTTTTGGATTAAGACAAGATGATCTCTGAAAAGAAGTCCTAAGAAGCAAGGATAGATGTGTTTGACTTTCA-AAAAGATGTTGGACATGGAACTGATGAGGGAACAGTAT-CAAGTGACACAAAGTTTACAAGTGGAACAAGACTAAGAAAAAAACAATTAACTCTTGGTAAAATCTACACAGCATTTTTTCACTTACGAGACTATCTGCTTTACAATATTGAATTCCATCAAGTCAGTC--TTTTTTCTCCCTATTCCTAATGACTAGTTAATCTAGTTAAAGTAAGGGAAAATGGCATAATAGCTAGAGAAAAAGATACTGAGAAAGTTTAGGAAATATATTTAGCATGAATTGTTTATAAATGAATCCCAATTAAATTAGAAATGATCCCAACTCTTAGAAAAACATGCCAGTACTATCGTGAGTTAATTTTGATCAACACGTATTGCCACCATTTAGCCATCTTCTAACATTCGATGTCCAATTATATCACCCTCAAATGCTTTTGTAAGGTCTCAGAGGCAAGTAAAATCAAGAGACAATTAGTTCAAAAACAT-TAAGATGGAATTATGGAAAGAGAAATTAATGAACAAATTTAGAGGTGATGATTTTAAATATATTTTTTTTGCCATGAATTCTTTTAAATACAA--ATTGTTTTGCCATAAATGTTTTGCCTTAGTCAATCTTATGCTCTTGTGGTACACAACAATGAGGCCTAGGTCAATGCAAATAGAACTTACTCTG-GGGGGAAAGATGAACAGTGAGATGCTTTGGACAGTGATCAGCAGGGGAAAAACCTGAGGTGG-AAAAAATTCTAATTTAGGGACACAAACTCAGTGGGAATTTACATGTTTTGACAAGGCAGCTTTCTTCACCACTTGACTGGGTAATTTAGTCCTATTTCAGTGTGGGGGTTTGAGAATACCATGTGGAATTC-AAAACTTTGGTTGATCTATTATCTTTATTTAG---AA----AAAA
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      3410 2097 +     39990 TGTCTCCACATTTTATCATAATCAGgatgtagatgcaaatg---acattttactgtaatgaagatacagatgcagattagaGCAAAAATGAAAATTTCATCTTGGCATCTCTGATCTCTAATTCTTAGTGGCTTCCTCCTACTGTTGATG----TCTATCCCTAACTGTGGATATTTAGAGGTCTCAGCTGGAATTTCACCTCCCAGTGCTAACATGTGGATCAA----CAAAGCTTGCTAGATGATTTTATCCTATTGGGATTTTCTGACCGTCCCTGGCTAGAGACACCGCTCTTTGTAATCTTTCCGGTGGCCTACATCTTTTCCCTATTTGGAAATATCTCCATTATCCTAGTTTCCCATCTGGACCCCCAGCTTGACAGTCCCGTGTACTTTTTTGTCTCCAATCTGTCTTTTCTGGACCTCTGCTATACCACCAGCACTGTCCCACAGATGCTGGTCAACCTCTGGGGACCAGAAAAGACCATTAGCTGTGGGGGTTGTGTTGCCCAACTCTATATATTTGTGGCCCTGGGTTCTACTAAATGCATTCTTCTAGCCATCATGGCCTTTGACTGTTATGCTGCCATTTGCAAGCCCCTTCACTACCCAGTCATCATGAACCACAGACGCTGTATCCACATGGCTGCTGGCACTTGGATCAGTGGCTTTGCTAACTCCCTTGTCCAGTCCACTCTCACAGTGGTGGCCCCAAGATGTGGACAAATGGTGTTGGACCATTTCTTCTGTGAAGTTCCAGCCCTTTTGAAACTAGCCTATATTGATATTCGTGTGAAGGAAACTGAGCTCAATGTACTAGGCACTTTGCTTCTCCTGGTGCCACTCACCATCATCCTGGGCACTTATGTGTTCATTGCTCAGGCAGTAATGAGAATCTGCGCTGCTGAAAGTCGTTGGAAGGCTTTCAATACCTGTGCCTCACATTTGCTGGTGGTCTCCCTCTTCTACTTCACAGCCATCAGTATGTATGTCCAGCCTCCCTCTAGCTATTCTTATGACTAGGGGAAGATCATGGCTCTCTTTTATGGCATTGTCACACCCACCCTCAACCCATTCATCTACACATCGAGAAACAAGGATGTGAAAGCTGCCCCGAGAAGGTCACTGACTAAAGAGTTTTGGATTAAGACAAGATGATCTCTGAAAAGAAGTCCTAAGAATTAAGGATAGATGTGTTTGACTTTCA-AAAAGATGTTGGACATGGAATTGATGAGGGAACAGTAT-CAAGTGACACAAAGTTTACAAGTGGAACAAGACTAAGAAAAAAACAATTAACTCTTGGTAAAATCTACATAGCATTTTTTCACTTATGAGACTATCTGCTTTACAATATTGAATTCCATCAAGTCAGTC--TTTTTTCTCCCTGTTCCTAATGACTAGTTAATCTAGTTAAAGTAAGGGAAAATGGTATAATATCTAGAGAAAAAGATACTTAGAAACTTTAGGAAATATATTTAGCATAAATTGTTTATAAATGAATCTCAATTAAATTAGAAATGATCCCAACTCTTAGAAAAACATGCCAG-ACTATCGTGAGTTAATTTTGATCAACATGTATTGCCACCATTTAGCCATCTTCTAACATTTGATGTCCAATTGTATCACCCTCAAATGCTTTTGTAAGGTCTCAGAGGCAAGTAAAATCAAGAGACAATTAGTTCAAAAACAT-TAAGATGGAATTATGGAAAGAGAACTTAATGAACAAATTTAGAGGTGATGATTTTAAATATA-ATATTTTGCCATGAATTCTTTTAAATACAA--ATTTTTTTGCCATAGATGTTTTGCCTTAGTCAATCTTATGCTCTTGTGGTACACAACAATGAGGCCTAGTTCAATGCAAATAGAACTTACTCTG-GGGGCAAGAATGAACAGTGAGATGCTTTGGACAGTGATCACCAGGGGAAAAACCTGAGATAG-AAAAAATTCTAATTTAGGGACACAAACTCAGTGGGAATTTACATGTTTTGGCAAGGCAGCTTTCTTCACCACTTGACTGGGTAAGTTAGTCCTATTTCATTGTGGGGGTTTGAGAATACCATGTGGAATTC-AAAACTTTGGTTGATCTATTATCTTTATTTAG---AA----AAAA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29798200 2101 + 172585720 TGTCTCCACAATTTATCATAATCAGGATATAGAGGCAAATG---ACATTTTACTGTCATGAAGATACAGATGCAGATTAGAGCAAAAATGAAAATTTAATCTCAGCGTCTCTGATCTCTAATTTTCAGTGGTTTCCTCTTACTGTTGATG----TATATCCCTAACTGTGGGTATTTAAAGGTCTCACCTGGAATTTCACCTACCAGTGCTGACATGTGGATCAACAATCAAAGCTCGCTACATGATTTTATCCTATTGGGATTTTCTGACCGTCCCTGGCTAGAGACACCCTTCTTTGTAATCTTTCTGGTGGCCTACATCTTTTCCCTATTTGGAAACATCTCCATTATCCTAGTTTCCTGCCTGAATCCCCAGCTTGACAGTCCCATGTACTTTTTTGTCTCCAATCTATCCTTTCTGGACCTCTGCTATACCACCAGCACTGTCCCAGAGATGCTGGTCAACCTCCGGGGAGCAGAAAAGATCATTAGCTATGGGGGTTGTGTTGCCCAACTCTATATATTTTTGGCCCTGGGTTCTACTGAATCCATACTTCTAGCCATCATGGCCTTTGACCGTTACGCTGCCATTTGCAAGCCCCTTCGCTACCCAGTCATCATGAACCAGAGACGCTGTATCCACATGGCTGCTGGCACTTGGATCAGTGGTTTTGCTAACTCCGTTGTCCAGTCCACTCTCACAGTGGTGGCCCCAAGATGTGGACAGAGGGTGTTGGACCATTTCTTCTGTGAAGTTCCAGCCCTTTTGAAACTAGCCTGTATTGCTAC-AGTGTGAATGAAACTGAGCTCAATGTACTAGGCGCTTCGCTTCTCCTGGTGCCACTCACCCTCATCCTGGGCACTTATGTGTTCATTGCTCAGGCAGTAATGAGAATCCGCTCTGCTGAAAGTCGCTGGAAGGCTTTCAATACCTGTGCCTCACATTTGCTGGTGGTCTCCCTCTTCTACTTCACAGCCATCAGTATGTATGTACAGCCTCCCTCTAGCTATTCTCGTGACCGGGGAAAGGTCATGGCTCTCTTCTATGGCATTGTCACACCCACCCTCAACCCATTCATCTACACATTGAGAAACAAGGATGTGAAAGCTGCCCTGAGAAGATCACTGACTAAAGAGTTTTGGATTAAGACAAGATGATCTCTGAAAAGAAGTCCTAAGAAGCAAGGATAGATATGTTTGACTTTCA-AAAAGATGTCAGACATGGAATTGATGAGGGAATAGTAT-CAAGTGACACAAAGTTCACAAGTGGAACAAGACTAAGAAAAAAACAGTTAACTCTTGGTAAAATCTACGTAGCATTTTTTCACTTATGAGAATACCTGCTTTACAATATTGAATTCCATCAAGTCAGTC-TTTTTTTCTCCCTTTTCCTAATGACCAGTTAATCTAGTTAGAGTAGGGGAAAATGGTATAATATCCAGAGAAAAAGATATTTAGAAAGTTTAGGAAATATATTTAGCATAAATTGTTTATAAATGAATCCCAATTAAATTAGAAATGATCCCAACTCCTAGAAAAACATGTCAGTACTATCGTGAGTTAATTTTGATCAACATGTATTGCCACCATCTAGCCATCTTCTAACATTCAATGTCCAATTATATCACCCTCAAATGCTTTTTTAAGGTCTCAGTGGCAAGTAGAATCAAGAGACAATTAGTTCAAAAACAT-TAAGATGAAATTATGGAACGTGAAATTAATGAACAAATTTAGAGGTGATGATTTTAAATATAATTTTTTTGCCATGAATTCTTTTAAA---AT--TCTTTTTTGCCATAAATGTTTTGCCTTAGTCAGTCTTATGCTCTCGTGGTACACAACAACGAGGCCTAGGTCAATACACATAGAACTTACTCTG-GGGGGAAAGATGAACAGTGAGATGCTTTGGACAGTGATCAGCAGGGGAAAAACCTGAGATGGAAAAAAATTCTAATTTAGCGACACAAACTCAGTGGGAATTTACATGTTTTGACAAGGAAACTTTCTTCATCACCTGACTGGGCAAGTTAGTCCTATTTCAGTGTGGGGGTTTGAGAATACCATGTGGAATTC-AAAACTTTGGTTGATCTATTATCTTTATTTAG---AA----AAAA
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29460502 2101 - 170955103 TGTCTCCACAATTTATCATAATCAGGATATAGAGGCAAATG---ACATTTTACTGTCATGAAGATACAGATGCAGATTAGAGCAAAAATGAAAATTTAATCTCAGCGTCTCTGATCTCTAATTTTCAGTGGTTTCCTCTTACTGTTGATG----TATATCCCTAACTGTGGGTATTTAAAGGTCTCACCTGGAATTTCACCTACCAGTGCTGACATGTGGATCAACAATCAAAGCTCGCTACATGATTTTATCCTATTGGGATTTTCTGACCGTCCCTGGCTAGAGACACCCTTCTTTGTAATCTTTCTGGTGGCCTACATCTTTTCCCTATTTGGAAACATCTCCATTATCCTAGTTTCCTGCCTGGATCCCCAGCTTGACAGTCCCATGTACTTTTTTGTCTCCAATCTATCCTTTCTGGACCTCTGCTATACCACCAGCACTGTCCCAGAGATGCTGGTCAACCTCCGGGGAGCAGAAAAGATCATTAGCTATGGGGGTTGTGTTGCCCAACTCTATATATTTTTGGCCCTGGGTTCTACTGAATCCATACTTCTAGCCATCATGGCCTTTGACCGTTACGCTGCCATTTGCAAGCCCCTTCGCTACCCAGTCATCATGAACCAGAGACGCTGTATCCACATGGCTGCTGGCACTTGGATCAGTGGTTTTGCTAACTCCGTTGTCCAGTCCACTCTCACAGTGGTGGCCCCAAGATGTGGACAGAGGGTGTTGGACCATTTCTTCTGTGAAGTTCCAGCCCTTTTGAAACTAGCCTGTATTGATACTGGTGTGAATGAAACTGAGCTCAATGTACTAGGCGCTTCGCTTCTCCTGGTGCCACTCACCCTCATCCTGGGCACTTATGTGTTCATTGCTCAGGCAGTAATGAGAATCCGCTCTGCTGAAAGTCGCTGGAAGGCTTTCAATACCTGTGCCTCACATTTGCTGGTGGTCTCCCTCTTCTACTTCACAGCCATCAGTATGTATGTACAGCCTCCCTCTAGCTATTCTCGTGACCGGGGAAAGGTCATGGCTCTCTTCTATGGCATTGTCACACCCACCCTCAACCCATTCATCTACACATTGAGAAACAAGGATGTGAAAGCTGCCCTGAGAAGATCACTGACTAAAGAGTTTTGGATTAAGACAAGATGATCTCTGAAAAGAAGTCCTAAGAAGCAAGGATAGATATGTTTGACTTTCA-AAAAGATGTCAGACATGGAATTGATGAGGGAATAGTAT-CAAGTGACACAAAGTTCACAAGTGGAACAAGACTAAGAAAAAAACAGTTAACTCTTGGTAAAATCTACGTAGCATTTTTTCACTTATGAGAATACCTGCTTTACAATATTGAATTCCATCAAGTCAGTC-TTTTTTTCTCCCTTTTCCTAATGACCAGTTAATCTAGTTAGAGTAGGGGAAAATGGTATAATATCCAGAGAAAAAGATATTTAGAAAGTTTAGGAAATATATTTAGCATAAATTGTTTATAAATGAATCCCAATTAAATTAGAAATGATCCCAACTCCTAGAAAAACATGTCAGTACTATCGTGAGTTAATTTTGATCAACATGTATTGCCACCATCTAGCCATCTTCTAACATTCAATGTCCAATTATATCACCCTCAAATGCTTTTTTAAGGTCTCAGTGGCAAGTAGAATCAAGAGACAATTAGTTCAAAAACAT-TAAGATGAAATTATGGAACGTGAAATTAATGAACAAATTTAGAGGTGATGATTTTAAATATAATTTTTTTGCCATGAATTCTTTTAAA---AT--TCTTTTTTGCCATAAATGTTTTGCCTTAGTCAGTCTTATGCTCTCGTGGTACACAACAACGAGGCCTCGGTCAATGCACATAGAACTTACTCTT-GGGGGAAAGATGAACAGTGAGATGCTTTGGACAGTGATCAGCAGGGGAAAAACCTGAGATGGAAAAAAATTCTAATTTAGGGACACAAACTCAGTGGGAATTTACATGTTTTGACAAGGAAACTTTCTTCATCACCTGACTGGGCAAGTTAGTCCTATTTCAGTGTGGGGGTTTGAGAATACCATGTGGAATTC-AAAACTTTGGTTGATCTATTATCTTTATTTAG----A----AAAA
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2447034 2101 -   2996164 TGTCTCCACAATTTATCATAATCAGGATATAGAGGCAAATG---ACATTTTACTGTCATGAAGATACAGATGCAGATTAGAGCAAAAATGAAAATTTAATCTCAGCGTCTCTGATCTCTAATTTTCAGTGGTTTCCTCTTACTGTTGATG----TATATCCCTAACTGTGGGTATTTAAAGGTCTCACCTGGAATTTCACCTACCAGTGCTGACATGTGGATCAACAATCAAAGCTCGCTACATGATTTTATCCTATTGGGATTTTCTGACCGTCCCTGGCTAGAGACACCCTTCTTTGTAATCTTTCTGGTGGCCTACATCTTTTCCCTATTTGGAAACATCTCCATTATCCTAGTTTCCTGCCTGGATCCCCAGCTTGACAGTCCCATGTACTTTTTTGTCTCCAATCTATCCTTTCTGGACCTCTGCTATACCACCAGCACTGTCCCAGAGATGCTGGTCAACCTCCGGGGAGCAGAAAAGATCATTAGCTATGGGGGTTGTGTTGCCCAACTCTATATATTTTTGGCCCTGGGTTCTACTGAATCCATACTTCTAGCCATCATGGCCTTTGACCGTTACGCTGCCATTTGCAAGCCCCTTCGCTACCCAGTCATCATGAACCAGAGACGCTGTATCCACATGGCTGCTGGCACTTGGATCAGTGGTTTTGCTAACTCCGTTGTCCAGTCCACTCTCACAGTGGTGGCCCCAAGATGTGGACAGAGGGTGTTGGACCATTTCTTCTGTGAAGTTCCAGCCCTTTTGAAACTAGCCTGTATTGATACTGGTGTGAATGAAACTGAGCTCAATGTACTAGGCGCTTCGCTTCTCCTGGTGCCACTCACCCTCATCCTGGGCACTTATGTGTTCATTGCTCAGGCAGTAATGAGAATCCGCTCTGCTGAAAGTTGCTGGAAGGCTTTTAATACCTGTGCCTCACATTTGCTGGTGGTCTCCCTCTTCTACTTCACAGCCATCAGTATGTATGTACAGCCTCCCTCTAGCTATTCTCGTGACCGGGGAAAGGTCATGGCTCTCTTCTATGGCATTGTCACACCCACCCTCAACCCATTCATCTACACATTGAGAAACAAGGATGTGAAAGCTGCCCTGAGAAGATCACTGACTAAAGAGTTTTGGATTAAGACAAGATGATCTCTGAAAAGAAGTCCTAAGAAGCAAGGATAGATATGTTTGACTTTCA-AAAAGATGTCAGACATGGAATTGATGAGGGAATAGTAT-CAAGTGACACAAAGTTCACAAGTGGAACAAGACTAAGAAAAAAACAGTTAACTCTTGGTAAAATCTACGTAGCATTTTTTCACTTATGAGAATACCTGCTTTACAATATTGAATTCCATCAAGTCAGTC-TTTTTTTTCCCCTTTTCCTAATGACCAGTTAATCTAGTTAGAGTAGGGGAAAATGGTATAATATCCAGAGAAAAAGATATTTAGAAAGTTTAGGAAATATATTTAGCATAAATTGTTTATAAATGAATCCCAATTAAATTAGAAATGATCCCAACTCCTAGAAAAACATGTCAGTACTATCGTGAGTTAATTTTGATCAACATGTATTGCCACCATCTAGCCATCTTCTAACATTCAATGTCCAATTATATCACCCTCAAATGCTTTTTTAAGGTCTCAGTGGCAAGTAGAATCAAGAGACAATTAGTTCAAAAACAT-TAAGATGAAATTATGGAACGTGAAATTAATGAACAAATTTAGAGGTGATGATTTTAAATATAATTTTTTTGCCATGAATTCTTTTAAA---AT--TCTTTTTTGCCATAAATGTTTTGCCTTAGTCAGTCTTATGCTCTCGTGGTACACAACAACGAGGCCTAGGTCAATACACATAGAACTTACTCTG-GGGGGAAAGATGAACAGTGAGATGCTTTGGACAGTGATCAGCAGGGGAAAAACCTGAGATGGAAAAAAATTCTAATTTAGGGACACAAACTCAGTGGGAATTTACATGTTTTGACAAGGAAACTTTCTTCATCAACTGACTGGGCAAGTTAGTCCTATTTCAGTGTGGGGGTTTGAGAATACCATGTGGAATTC-AAAACTTTGGTTGATCTATTATCTTTATTTAG----A----AAAA
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             211519 2104 +    766320 TGTCTCCACAATTTATCATAACCAGGATATAGAGGCAAATG---ACATTTTACTGTCATGAAGATACAGATGCAGATTAGAGCAAAAATGAAAATTTAGTCTCAGCATCTCTGATCTCTAATTCTCAGTGGTTTCCTCTTACTATTGATG----TCTATCCCTAACTGTGGGTATTTAGAGGTCTCAGCTGGAATTTCGCCTACCAGTGCTGACATGTGGATCTACAATCAAAGCTCGCTACATGATTTTATCCTATTGGGATTTTCTGACCATCCCTGGCTAGAGACACCCTTCTTTGTAATCTTTCTGGTGGCCTACATCTTTTCCCTATTTGGAAACATCTCCATTATCCTAGTTTCCTGCCTGGATCCCCAGCTTGACAGTCCCATGTACTTATTTGTCTCCAATCTATCCTTTCTGGACCTCTGCTATACCACCAGCACTGTCCCACAGATGCTGGTCAACCTCCGGGGAGCAGAAAAGATCATTAGCTATGGGGGTTGTGTTGCCCAACACTATATATTTTTGGTCCTGGGTTCTACTGAATCCATACTTCTAGCCATCATGGCCTTTGACCGTTACGCTGCCATTTGCAAGCCCCTTCACTACCCAGTCATCATGAACCAGACACGCTGTATCCACATGGCTGCTGCCACTTGGAGCAGTGGTTTTGCTAACTCCGTTGTCCAGTCCACTCTCACAGTGGTGGCCCCAAGATGTGGACAGAGGGTGTTGGACCATTTCTTCTGTGAAGTTCCAGCCCTTTTGAAACTAGCCTGTATTGATACTGGTGTGAATGAAACTGAGCTCAATGTACTAGGCGCTTTGCTTCTCCTGGTGCCACTCACCCTCATCCTGGGCACTTATGTGTTCATTGCTCAGGCAGTAATGAGAATCCGCTCTGCTGAAAGTCGCTGGAAGGCTTTCAATACCTGTGCCTCACATTTGCTGGTGGTCTCCCTCTTCTACTTCACGGCCATCAGTATGTATGTACAGCCTCCCTCTAGCTATTCTCGTGACCGGGGAAAGGTCATGGCTCTCTTCTATGGCATTGTCACACCCACCCTCAACCCATTCGTCTACACATTGAGAAACAAGGATGTGAAAGCTGCCCTGAGAAGATCACTGACTAAAGAGTTTTGGATTAAGACAAGATGATCTCTGAAAAGAAGTCCTAAGAAGCAAGGATAGATATGTTTGACTTTCA-AAAAGATGTCAGACATGGAATTGATGAGGGAATAGTAT-CAAGTGACACAAAGTTCACAAGTGGAACAAGACTAAGAAAAAAGCAATTAACTCTTGGTAAAATCTACGTAGCATTTTTTCACTTATTAGAATACCTGCTTTACAATATTGAATTCCATCAAGTCAGTC--TTTTTTCTCCCTTTTCCTAATGACCAGTTAATCTAGTTAAAGTAGGGGAAAACGGTATAATATCCAGAGAAAAAGATATTTAGAAAGTTTAGGAAATATATTTAGCATAAATTGTTTATAAATGAATCCCAATTAAATTAGAAATGATCCCAACTCCTAGAAAAACATGTCAGTACTATCGTGAGTTAATTTTGATCAACATGTATTGCCACCATCTAGCCATCTTCTAACATTCAATGTCCAATTCTATCACCCTCAAATGCTTTTTTAAGGTCTCAGTGGCAAGTAGAATCAGGAGACAATTAGTTCAAAAACAT-TAAGATGAAATTATGGAAAGAGAAATTAATGAACAAATTTAGAGGTGATGATTTTAAATATAATTTTTTTGCCATGAATTCTTTTAAA---AT--TCTTTTTTGCCATAAATGTTTTGCCTTAGTCAGTCTTATGCTCTCGTGGTACACAACAACGAGGCCTAGGTCAATACACATAGAACTTACTCTG-GGGGGAAAGATGAACAGTGAGATGCTTTGGACAGTGATCAGCAGGGGAAAAACCTGAGATGGAAAAAAATTCTAATTTAGGGACACAAACTCAGTGGGAATTTACGTGTTTTGACAGGGAAACTTTCTTCATCACCTGACTGGGCAAGTTAGTCCTATTTCAGTGTGGGGGTTTGAGAATACCATGTGGAATTC-AAAACTTTGGTTGATCTGTTATCTTTATTTAGAAAAA----AAAA
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28723741 2106 -  71996105 TGTCTCCACAATTTATCATAATCAGGATATAGATGCAAATG---ACATTTTACTGTCATGAAGATAGAGATGCAGATTAGAGCAAAAATGAAAATTTAATCTCAGCATCTCTGATCTCTAATTCTCAGTGATTTCCTCTTGCTGTTGATG----TCTATCCCTAACTGTGGGTATTTAGAGGTCTCAGCTGGAATTTCACCTACCAGTGCTGACATGTGGATCAACAATCAAAGCTCGCTACATGATTTTATCCTATTGGGATTTTCTGACCGTCCCTGGCTAGAGACACCCTTCTTTGTAATCTTTCTGGTGGCCTACATCTTTTCCCTATTTGGAAACATCTCCATTATCCTAGTTTCCTGCCTGGATCCCCAGCTTGACAGTCCCATGTACTTTTTTGTCTCCAATCTATCCTTTCTGGACCTCTGCTATACCACCAGCACTGTCCCACAGATGCTGGTCAACCTCCGGGGAGCAGAAAAGATCATTAGCTATGGGGGTTGTGTTGCCCAACTCTATATATTTTTGGCCCTGGGTTCTACTGAATCCATACTTCTAGCCATCATGGCCTTTGACCGTTATGTGGCCATTTGCAAGCCCCTTCACTACCCAGTCATCATGAACCAGAGACGCTGTATCCACATGGCTGCTGACACTTGGATCAGTGGTTTTGCTAACTCCGTTATCCAGTCCACTCTCACAGTGGTGGCCCCAAGATGTGGACAGAGGGTATTGGACCATTTCTTCTGTGAAGTTCCAGCCCTTTTGAAACTAGCCTGTATTGATATTGGTGTGAATGAAACTGAGCTCAATGTACTAGGCGCTTTGCTTCTCCTGGTGCCACTCACCCTCATCCTGGGCACTTATGTGTTCATTGCTCAGGCAGTAATGAGAATCCGCTCTGCTGAAAGTCGCTGGAGGGCTTTCAATACCTGTGCCTCACATTTGCTGGTGGTCTCCCTCTTCTACTTCACAGCCATCAGTATGTATGTACAGCCTCCCTCTAGCTATTCTCGTGACCGGGGAAAGGTCATGGCTCTCTTCTATGGCATTGTCACACCCACCCTCAACCCATTCATCTACACATTGAGAAACAAGGATGTGACAGCTGCCCTGAGAAGATCACTGACTGAAGAGTTTTGGATTAAGACAAGATGATCTCTGAAAAGAAGTCCTAAGAAGCAAGGATAGGTATGTTTGACTTTCA-AAAAGATGTCAGACATGGAATTGATGAGAGAATAGTAT-CAAGTGACACAAAGTTCACAAGTGGAACAAGACTAAGAAAAAAGCAATTAACTCTTGGTAAAATCTACGTAGCATTATTTCACTTATGAGAATACCTGCTTTACAATATTGAATTCCATCAAGTCAGTC-TTTTTTTCTCCCTTTTCCTAATGACTAGTTAATCTAGTTAAAGTAGGGGAAAATGGTATAATAGCTAGAGAAAAAGATATTTAAAAAGTTAAGGAAATATATTTAGCATAAATCATTTATAAATGAATCCCAATTAAAATAGAAATGATCCCAACTCCTAGAAAAACATGTCAGTACTATCGTGAGTTAATTTTGATCAACATGTATTGCCACCATTTAGCCATCTTCTAACATTCAATGTCCAATTATATCACCCTCAAATGCTTTTTTAAGGTTTCAGTGGCAAGTAGAATCAAGACAAAATTAGTTCAAAAACAT-TAAGATGAAATTATGGAAAGAGAAATTAATGAACAAATTTAGAGGTGATGATTTTAAATATAATTTTTTTGCCATGAATTCTTTTAAA---AT--TCTTTTTTGCCATAAATGTTTTGCCTTAGTCAGTCTTATGCGCTCGTGGTACACAACAACGAGGCCTAGGTCAATACAAATAGAACTTACTCTG-GGAGGAAAGATGAACAGTGAGATGCTTTGGACAGTGATCAGCAGGGGAAAAACCTGAGATGGAAAAAAATTCTAATTTAGGGACACAAACTCAGCGGGAATTTACATGTTTTGACAAGGAAACTTTCTTCACCACTTGACTGGGCAAGTTAGTCCTATTTCAGTGTGGGGGTTTGAGAATACCATGTAGAACTC-AAAACTTTGGTTGATCTATTATCTTTATTTAG---AACAACAAAA
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             184743 2102 -    352859 TGTCTCCACAATTTATCATAACCAGGATATAGAGGCAAATG---ACATTTTACTGTCATGAAGATACAGATGCAGATTAGAGCAAAAATGAAATTTTAATCTCAGCATCTCTGATCTCTAATTCTCAGTGGTTTCCTCTTACTGTTGATG----TCTATCCCTAACTGTGGGTATTTAGAGGTCTCAGCTGGAATTTCGCCTACCAGTGCTGACATGTGGATCTACAATCAAAGCTCGCTACATGATTTTATCCTATTGGGATTTTCTGACCGTCCCTGGCTAGAGACACCCTTCTTTGTAATCTTTCTGGTGGCCTACATCTTTTCCCTATTTGGAAACATCTCCATTATCCTAGTTTCCTGCCTGGATCCCCAGCTTGACAGTCCCATGTACTTTTTTGTCTCCAATCTATCCTTTCTGGACCTCTGCTATACCACCAGCACTGTCCCAGAGATGCTGGTCAACCTCCGGGGAGCAGAAAAGATCATCAGCTATGGGGGTTGTGTTGCCCAACTCTATATATTTTTGGCCCTGGGTTCTACTGAATCCATACTTCTAGCCATCATGGCCTTTGACCGTTACGCTGCCATTTGCAAGCCCCTTCGCTACCCAGTCATCATGAACCAGAGACGCTGTATCCACATGGCTGCTGGCACTTGGATCAGTGGTTTTGCTAACTCCGTTGTCCAGTCCACTCTCACAGCGGTGGCCCCAAGATGTGGACAGAGGGTGTTGGACCATTTCTTCTGTGAAGTTCCAGCCCTTTTGAAACTAGCCTGTATTGATACTGGTGTGAATGAAACTGAGCTCAATGTACTAGGCGCTTTGCTTCTCCTGGTGCCACTCACCCTCATCCTGGGCACTTATGTGTTCATTGCTCAGGCAGTAATGAGAATCCGCTCTGCTGAAAGTCGCTGGAAGGCTTTCAATACCTGTGCCTCACATTTGCTGGTGGTCTCCCTCTTCTATTTCACGGCCATCAGTATGTATGTACAGCCTCCCTCTAGCTATTCTCGTGACCGGGGAAAGGTCATGGCTCTCTTCTATGGCATTGTCACACCCACCCTCAACCCATTCGTCTATACATTGAGAAACAAGGATGTGAAAGCTGCCCTGAGAAGATTACTGACTATAGAGTTTTGGATTAAGACAAGATGATCTCTGAAAAGAAGTCCTAAGAAGCAAGGATAGATATGTTTGACTTTCA-AAAAGATGTCAGACATGGAATTGATGAGGGAATAGTAT-CAAGTGACACAAAGTTCACAAGTGGAACAAGACTAAGAAAAAAGCGATTAACTCTTGGTAAAATCTACGTAGCATTTTTTCACTTATGAGAATACCTGCTTTACAATGTTGAATTTCATCAAGTCAGTC-TTTTTTTCTCCCTTTTCCTAATGACCAGTTAATCTAGTTAAAGTAGGGGAAAACGGGATAATAGCTAGAGAAAAAGATATTTAGAAAGTTTAGGAAATATATTTAGCATAAATTGTTTATAAATGAATCCCAATTAAATTAGAAATGATCCCAACTCCTAGAAAAACATGTCAGTACTATCGTGAGTTAATTTTGATCAACATGTATTGCCACCATCTAGCCATCTTCTAACATTCAATGTCCAATTATATCACCCTCAAATGCTTTTCTAAGGTCTCAGTGGCAAGTAGAATCAAGAGACAATTAGTTCAAAAACAT-TAAGATGAAATTATGGAAAGTAAAATTAATGAACAAATTTAGAGGTGATGATTTTAAATATAATTTTTTTGCCATGAATTCTTTTAAA---AT--TCTTTTTTGCCATAAATGTTTTGCCTTAGTCAGTCTTACGCTCTCGTGGTACACAACAACGAGGCCTAGGTCAATACACATAGAACTTACTCTG-GGAGGAAGGATGAACAGTGAGATGCTTTGGACAGTGATCAGCAGGGGAAAAACCTGAGATGGAAAAAAATTCTAATTTAGGGACACAAACTCAGTGGGAATTTACGTGTTTTGACAGGGAAACTTTCTTCATCACCTGACTGGGCAAGTTAGTCCTATTTCAGTGTGGGGGTTTGAGAATACCATGTAGAACTC-AAAACTTTGGTTGATCTATTATCTTTATTTAG---AA----AAAA
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2353318 2098 -   3067355 TGTCTCCACAATTTATCATAACCAAGATGTAGATGCAAATG---ACATTTTACTGTCATGAAGATACAGATGCAGATTAGAGCAAAAATGAAAATTTAATCTTAGCATCTCTGATCTCTAATGCTCAGTGATTTCCTCTTACTATTGATG----TCTATCCCTAACTGTGGGTATTTAGAGGTCTCAGCTGAAATTTCACCTACCAGTGCTGACATGTGGATCAACAATCAAAGCTCGCTACATGATTTTATCCTACTGGGATTTTCTGACCGTCCCTGGCTGGAGACACCCTTCTTTGTAATCTTTCTGGTGGCCTACATCTTTTCCCTATTTGGAAACATCTCCATTACCCTAGTTTCCTGCCTGGATCCCCAGCTTGACAGTCCCATGTACTTTTTTGTCTCCAATCTGTCCTTTCTGGACCTCTGCTATACCACCAGCACTGTCCCACAGATGCTGGTCAACCTCCGGGGAGCAG--AAGATCATTAGCTATGGGGGTTGTGTTGCCCAACTCTATATATTTTTGGCCCTGGGTTCTACTGAATCCATATTTCTAGCTATCATGGTCTTTGACCATTACGCTGCCATTTGCAAGCCCCTTCACTACCCAGTCATCATGAACCAGAGATGCTGTATCCACATGGCTGCTGGCACTTGGATCAGTGGTTTTGCTAACTCCGTTATCCAGTCCACTCTCACAGTGGTGGCCCCAAGATGTGGACAGAGGGTGTTGGACCATTTCTTCTGTGAAGTTCCAGCCCTTTTGAAACTAGCCTGTATTGACATTGGTGTGAACGAAACTGAGCTCAATGTACTAGGCGCTTTGCTTCTCCTGGTGCCACTCACCCTCATCCTGGGCACTTATGTGTTCATTGCTCAGGCAGTAATGAGAATCCGCTCTGCTGAAAGTCTCTGGAAGGCTTTCAATACCTGTGCCTCACATTTGGTGGTGGTCTCCCTTTTCTACTTCACGGCCATCAGTATGTATGTACAGCCTCCCTCTAGCTATTCTCGTGACCGGGGGAAGATCATGGCTCTCTTCTATGGCATTGTCACACCCACCCTCAACCCATTCATCTACACATTGAGAAACAAGGATGTGAAAGCTGCCCTGAGAAGGTCACTGACTAAAGAATTTTGGATTAAGACAAGATGATCTCTGAAAAGAAGTCCTAAGAAGCAAGGATAGATATGTTTGACTTTCA-AAAAGATGTCAGACCTGGAATTGATGAGGGAATAGTAT-TAAGTGACACAAAGTTCACAAGTGGAACAAGACTAAGAAAAAAGCAATTAACTCTTGGTAAAATCTATGTAGCATTTTTTCACTTATGAGAATACCTGCTTTACAATATTGAATTCCATC-ATTCAGTC-ATTTTTTCTCTCTTTTCCTAATGACTAGTTAATCTAGTTAAAGTAGGGGAAAACGGTATAATAGCTAGAGAAAAAGATACTTAGAAAGTTTAGGAAATATATTTAGCATGAATTGTTTATAAATGAATCCCAGTTAAATTAGAAATGATCCCAACTCCTAGAAAAACATGTCAGTACTATCATGAGTTAATTTTGATCAACAAGTATTGCCACCATTTAGCCATCTTCTAACATTCAATGTCCAATTATATCACCCTCAAATGCTTTTTTAAGGTCTCAGAGGCAAGTAAAATCAAGAGACAATTAGTTCAAAAACAT-TAAGATGAAATTATGGAAAGAGAAATTAATGAACAAATTTAGAGGTGATGATTTTAAATATAATTTTTTTGCCATGAATTCTTTTAAA---AT--GCTTTTTTGCCATAAATGTTTTGCCTTAGTCAGTCTTATGCTCTCGTGGTACACAATAACGAGGCCTAGGTCAACACAAATAGAACTTACTCTG-GGGGGAAAGATGAACAGTGAGATGCTTTGGACAGTGATCAGCAGGAGAAAAACCTGAGATGGAAAAAAATTCTAATTTAGGGACACAAACTCAGCAGGAATTTACATGTTTTGACAAGGAAACTTTCTTCACCACTTGACTGGGCAAGTTAGTCCCATTTCAGTGTGGGGGTTTGAGAATACCATGTGGAATTC-AAAACTTTGGTGGATCTATTATCTTTATTTAG----A----AAAA
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126569906 2084 - 158406734 TGACTCCACATTTTATCATCATCAGGATGTAGATGCAAATG---ATGTTTTACTGTAATGAAGATACAGATGCAGATTAGAGCAAAATTGAGAATTTCATCTCAGCATCTCTGGTCTCTAATTCTCAGTGGCTTCCTCTTACTGTTGATGTCTATCTATCCCTAATTGTGGGTATTTAGAGGTCTCAGCTGGAATTTCACCTCTCAGTACTGACATGTGGATCAACAATCAAAGTTCAATAGATGATTTTATCATATTGGGATTTTCTGGCCATCCCTGGCTAGAAACAACACTC--TGTAACCTTTCTGGTGGCCTACATCTTTGCCCTATTTGGAAATATCTCCATTATCTTAGTTTCCTGCCTGGATCCCCAGTTTGACAGCCCCATGTACTTTTTTGTCTCCAATCTATCCTTTCTGGACCTCTGCTATACCACCAGCACTATCCCACAGATGCTGATCAACCTCCAGGGACCAGAAAAGAACATTAGCTATGACGGTTGTGTTGCCCAACTCTATATACCTTTGGCCCTGGGTTCTACTGAATGCATACTTTTGGCCATCATGGCCTTTGACCATTATGCTGCCATTTGCAAGCCTCCTCACTACCCAATCATCATGAACCAGAAACACTGTATCCACATG------GGCACCTGGATCAGTGGTTTTGCTAACTCCCTTGTCCCGTGCACTCTCACAGTGATGGCTCCAAGATGTGGACAGAGAGTGTTGGACCATTTCTTCTGTGAAGTTCCAGCCCTTTTGAAACCAGCCTGTGTTGATACT-GTATGAATGAAGCTGGGCTCAATGTACTAGGCACTTTGCTTCTCCTGGTGCCACTCACCGTCATCCTGGGCACTTACGTGTTCATTGCTCAGGCAGTAATGAGAATTCTCTCTGCTGAAAGTCGCTGGAAGGCTTTCAATACCTGTGTTTCACATTTTCTGGTGGTCTCTCTCTTCTACTTCACACCCATCAGTATGTATGTCCAGCCTCCCTCTAGCTATTCTCATGACCGGG---GGATCATGGCTCTCTTCTATGGCATTGTCACACCCACCTTCAACCCATTCATCTACACATTGAGAAACGAGGATGTGAATGCTGCCCTAAGAAAGGCACTGACTAAGGAGTTTTAGATTAAGACAAGATGGTCTCTGAAAAGAAGTCCTAAGAAGCAAGGATAGATGTGTTTGACTTTCA-AAAAGATGTCGGACGTGGAATTGATGAGGGAACAGTAT-CAAGTGACACAAAGTTCACAAGTGGAACAAGACTAAGAAATAAACAATTAACTCTTGGTAAAATCTGAATAGCATTTATTCACTTATGAGAATATCTGCTCTATGATATTGAATTGTAGCAAGTCAGTC--TCTTTTTTTCCTATACCTAATGACTGGTTAATCTAGTTTAAAT-GGGGAAAATGGTATAATATCTGGAGAAAAATATACTTAGAAAGTTTAGGAAATATATTTAGCACAAATTGTTTGCAAATGAATCCCAATTCAATTAGAAATGATCCCAACTCTTAGAAAAACATGTCACTACTGTCATGAGTTAATTTTGATCAACATGTATTGCCACCATTTAGTCATCTTCTAACATTCAATGTCCAATTATCTCACCCTCAAAGGCTTTTTTAAGGTCTCA-AGGTAAGTAAAATCAAGACATAGTTAGTCCAAAAACAT-TAAGATGGAAATATGGAAAGAGAAATTCATGAACAAATTTAGA-GTGATGACTTTAAATATAA-TTTTTTGCCATGAATTATTTTAAATACAA-----ATTTTGCCATAAATGTGTTGTCTTAGTCAAGCTTATGCTCTTGTGGTATCCAACAATGAGGCACAGGTCAACACAAATAGAGCTTACTCTGCGGGGGAAAGAGAAACAGTGAGATGCTTTGGACAGTGATCAGCAATAAAAAAC-CTGAGATGGAAAAAGATTGTAATTTAAGGACACAAACTCAGTGGGAATTTACGTGTTTTGACAAGGCAGCTTTCTTCACCACCTGACTGGGTAAGCTAGTCCTGTTTCAATGTGTGGGTTTGAGAATACCATGTTGAATTG-AAAACTTT----GATCTATTCTCTTTATTTAG----A----AAAA
i calJac3.chr6                    I 2245 C 0
s cebCap1.NW_016107522v1             190170 2080 +   3820305 TGACTCCACGTTTTATCATCATCAGGTTATAGATGCAAATG---ACATTTTACTGTAATGAAGATGCAGATGCAGATTAGAGCAAAAATGAGAATTTCATCTCAGCATCTCTGATCTCTAATTCTCAGTGGCTTCCTCTTACTGCTGATGTCTATCTATCCCTAATTGTGGGTATTTAGAGGTCTCAGCTGGAATTTCACCTCTCAGTACTGACATGTGGGTCAACAATCAAAGCTCAATAGGTGATTTTATCATATTGGGATTTTCTGGCCATCCCTGGCTAGAGACAACACTC--TGTAATCTTTCCGGTGGCCTACATCTTTGCCCTATTTGGAAATATCTCCATTATCCTAGTTTTCTGCCTGGATCCCCAGCCTGACAGCCCCACATACTTTTTTGTCTCCAGCCTATCCTTTCTGGACCTCTGCTACACCACCAGCACTATCCCACAAATGCTGGTCAACCTCCAGGGACCAGAAAAGACCATTAGCTATGGGGGTTGTGTTGCCCAACTCTATATAGCTTTGGCCTTGGGTTCTACTGAATGCATGCTTCTGGCCATCATGGCCTTTGACCATTATGCTGCCATTTTCAAGCCTCCTCACTACCCAATCATCATGAAGCAGAAACACTGTATCCACATG------GGCACCTGGATCAGTGATTTTGCTAACTCCCTTGTCTAATGCACTCTCACAGTGATGGCTCCAAGATGTGGACGGAGAGTGTTGGACCATTTCTTCTGTGAAGTTCCAGCCCTTTTGAAACTAGCCTGTATTGATACTCGTATGAATGAAGCTGGGCTCAATGTACTAGGCGTTTTGCTTCTCCTGGTGCCACTCACCGTCTTCCTGGGCACTTATGTGTTCATTGCTCAGGCAGTAATGAGAATTCTCTCTGCTGAAAGTCGCTGGAAGGCTTTCAATACCTGTGCTTCACATTTGCTGGTGGTCTCTCTCTTCTACTTCACACCCATCAGTATGTACGTCCAGCCTCCCTCTAGCTATTCTCATGACCGGGGGAGGATCGTTGCTCTCTTCTGTGGCATTGTCACACCCACCTTCAACCCATTCATCTACACATTGAGAAACAAGGATGTGAACGCTGCTATAAGAAGGGCACTGACTAAGGAGTTTTGGATTAAGACAAGATGATCTCTGAAAAGAAGTCCTAAGAAGGAAGGATAGATGCGTTTGACTTTCA-AAAAGATGTCGGACATGGAATTGATGAGGGAACAGTAT-CAAGTGAAACAAAGTTCACAAGTGGAACAAGACTAAGAAAGAAAC----AACTCTTGGTAAAATCTACATAGCATTTATTCACTGATGAGAATATCTGCTCTATGATATTGAACTGCAGCAAGTCAGTC--TCTTTTCTCCCTATTCCTAATGACTAGTTAATCTAGTTTAAGT-GGGGAAAAT-GTATAATATCTGGAGAAAAAGATACTTAGAAAGTTTAGGAAATATATTTAGCACAAATTGTTTATAAATGAATCCCAATTAAATTAGAAATGATCCCAACTCTTCGAAAAACATGTCACTACTGTCATGAGTTAATTTTGATCAACGTATATTGCCACCATTTAGTCATCTTCTAACATTCAATGTCCAATTATATCATCCTCAAAGGCTTCTTTAAGGTCTCAGAGGTAAGTAAAATCAAG----AGATAGTCCAAAAACAT-TAAGATGGAAATATGGAAAGGGAAATTCATGAACAAATTTAGA-GTGATGACTTTAAATATAA-TTTTTTGCCATGAATTATTTTAAATACAA-----ATTTTGCCATAAATGTGTTGTCTTAGTCAAGCTTATGCTCTTGTGGTACCCAATAATGAGGCATAGGTCAATACAAATAGAGCTCACTCTG-GGGGGAAAGATAAACAGTGAGATGCTTTGGACAATGATCAGCAATAGAAAACTCTGAGATGGAAAAAAATTCTAATTTAAGGACACAAACTCAATGGGAATTTACATGTTTTGACAAGGCAGCTTTCTTCACCACTTGACTGGGTAAGCTAGTCCTATTTCAGTGTGTGGGTTTGAGAATACCATGTTGAATTG-AAAACTTT----GATCTATTATCTTTATTTAG----A----AAAC
i cebCap1.NW_016107522v1          C 0 C 0
s otoGar3.GL873742                  1945429 2026 -   2232465 TGACTCAACATTTTACTGTAATCAGGATATAGACACAGATGTTATCATTTTACTATAGTCAGGATATAGAGGCATGTTAGAGCAAAAATGAGAATTTTATCTCAGCATCTCTGGCTTCTAATTCTCACTGGCTTCCCCTTACCATCGATG----TCCATTCCTAATGGTGGGTATTTAGAGGTCTCAGCTGGAATTTCACCTATCAGTAGTAATCTATGGATCAATAATCAAAGCTCGCTAGATGATTTTATTCTATTGGGATTTTCTGACTATCCCTGGCTAGAGACTCCACTTTTTGTAATCTTTCTGGTGGCCTACATCTTTGCCCTATTTGGAAATATCTCCATTATCCTAGTTTCCCGCATGGATCCTCAGCTTGACAGTCCTATGTACTTTTTTGTCTCAAATCTATCCCTTCTAGACTTCTGCTATACTACCAGCACTGTCCCACAGATGCTAGTCAACCTTCGGGGACCAGAAAAAACCATTAGCTATGGAGGTTGTGTTACCCAACTCTATATTTTCTTGGCCTTGGGTTCCACTGAGTGTATACTTTTAGCCATCATGGCCTTTGACCGTTATGCTGCCATTTGCAAACCCCTTCATTACCCAATTATCATGAACCAGAGACGCTGTATCCACATGGCAGCTGGAACCTGGATTAGTGGTTTTGCTAACTCCCTTGTCCAGTCCACTCTCACAGTAGTGGCCCCAAGATGTGGGCAGAGAGTAATTGACCATTTCTTCTGTGAAGTTCCTGCCCTTCTCAAACTAGCCTGTACTGATACTAGTGTGAATGAAGCTGAGCTCAATGTGCTAGGGGCCTTGCTTCTCCTAGTGCCACTTGCCCTCATCTTGGGCACTTATGTGTTCATTGCTCGAGCAGTAATGAGAATTCGCTCTGCTGAAAGTCGCTGGAAGGCCTTTAATACCTGTGCTTCACATTTGCTGGTGGTTTCACTCTTCTACTTTACAGCCATCAGTATGTATGTCCAGCCTCCCTCTAGCTATTCCCATGAACGGGGGAAGATCATGGCTCTCTTCTATGGCATTGTCACGCCCACCCTCAACCCATTCATCTATACATTGAGGAATAAAGATGTGAAAGCTGCCCTAAGAAGGGCGCTTACTAAGGAGTTTTGGATCAGGACAAGATAATATCTGAAAGGAAGACCTAAGA----AGGATGGGTATGTTTTCCTTCCACAAAAGATGTCAGACATAGACTTGATGAGTAAATAGTGTACAAGTTGCACAAAGCTCACAAGTTA---AAGACTAAGAAAGAAATAATCAACTCTTGCTGGAATCTACACAGCATTTACCTATTAAAGAGGATACCCTCTTTACAATATTGAACTCCATCAAGTCAATGCTTCTTTTTTACCTAAGCCTAACTATCAATCAATCTGGTTTAA--AAGGGAAAACAGTACATTATCTGGAGGAAAAAATATCTGGAAAGTTTAGAAAATGTATTTGACATAAATTGCTCACAAATGGTTTCCAAGTAAATTAGAAGTGATCCTATCTTTTAG-AAAACATGTTA---------TAAGTTAATTTCAATAAACATATATTGACACAATTTAGTCATCTTCTAACA-TCAGTGTCCAGCTATATCATCCTCAAAGGCTTTACCAAGGCCCCAGAGGCAAATGAAATTAAGAAATAATTAGTTCAAAAGCATGTAAGATAAAAACATGAATATAGAAATGTATTAA-AAATTTAGAGGTGATGGTTTTAAACATA-----------------------------AA--TTGTTTTCTCCAT-----------------------------TTTGAGATAATGAGCAATGAAGTCATGATTAACACAAATGGAACTTACTTTG-GGGAGAAAGAAAAACTGTGAGATGCTTTGGACAGTGAATAGTAATGAAAAAACTTGAGGTGG-AAAAAATTCTAACTTAAGAAAACTAGACCACTCAGGATTTACTTG-TCTGACAAGGCAGCTT------CCACTTGCTTAGGTAAATTAGTTTTCTTTCAATGTGGGGTTATAAGAATACCATATTGAATTCAAAAACCTTCAttttttttttttaatttttgag---at----agaa
i otoGar3.GL873742                C 0 I 300
e canFam3.chr35                    26204327 64688 +  26524999 T

a score=6967.000000
s hg38.chr6_GL000254v2_alt           558354 5 +   4827813 AA---GAC
s panTro5.chr6                     29530804 6 + 175400573 AA--AGAC
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29769091 5 + 173848474 AA---GAC
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5571904 8 +   6154872 AAAAAGAC
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      5507 6 +     39990 AA--AGAC
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29800301 6 + 172585720 AA--AAAC
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29462603 6 - 170955103 AA--AAAC
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2449135 6 -   2996164 AA--AAAC
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             213623 6 +    766320 AA--AAAC
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28725847 6 -  71996105 AA--AAAC
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             186845 6 -    352859 AA--AAAC
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2355416 6 -   3067355 AA--AAAC
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126571990 2 - 158406734 AT------
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             192250 2 +   3820305 AA------
i cebCap1.NW_016107522v1          C 0 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1947455 300 -   2232465 I

a score=706254.000000
s hg38.chr6_GL000254v2_alt           558359 87 +   4827813 TTTTATAGCCTTTTGCTATAAACTGCCTCACAAACCTATGAGCCGAAGAAACCAAGACAAAATAGAGTGAGTTCACCAAAAAATCCA
s panTro5.chr6                     29530810 87 + 175400573 TTTTATAGCCTTTTGCTATAAACTGCCTCACAAACCTATGAGCCGAAGAAACCAAGACAAAATAGAGTGAGTTCACCAAAAAATCCA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29769096 87 + 173848474 TTTTATAGCCTTTTGCTATAAACTGCCTCACAAACCTATAAGCCGAAGAAACCAAGACAAAATAGAGTGAGTTCACCAAAAAATCCA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5571912 87 +   6154872 TTTTATAGCCTTTTGCTATAAACTGCCTCACAAAACTATGAGCCAAAGAAACCAAGACAAAATAGAGTGAGTTCACCCAAAAATCCA
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      5513 87 +     39990 TTTTATAGCCTTTTGCTATAAACTGCCTCGCAAACCTATGAGCCAAAGATACCAAGACAAAATAGAGTGAGTTCACCAAAAAATCCA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29800307 87 + 172585720 TTTTATAGCCTATTGCTATAAACTGCCTCACAAACATATGAGCCAAAGATACCACGACAAAATAGAGTGAGTTCACCAAAAAATCCA
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29462609 87 - 170955103 TTTTATAGCCTATTGCTATAAACTGCCTCACAAACCTATGAGCCAAAGATACCACGACAAAATAGAGTGAGTTCACCAAAAAATCCA
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2449141 87 -   2996164 TTTTATAGCCTATTGCTATAAACTGCCTCACAAACCTATGAGCCAAAGATACCACGACAAAATAGAGTGAGTTCACCAAAAAATCCA
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             213629 87 +    766320 TTTTATAGCCTATTGCTATAAACTGCCTCACAAACCTATGAGCCAAAGATACCACGACAAAATAGAGTGAGTTCACCAAAAAATCCA
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28725853 87 -  71996105 TTTTATAGCCTATTGCTATAAACTGCCTCACAAACCTATGAGCCAAAGATACCACGACAAAATAGAGTGAGTTCACCAAAAAATCCA
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             186851 87 -    352859 TTTTATAGCCTATTGCTATAAACCGCCTCACAAACCTATGAGCCAAAGATATCACGACAAAATAGAGTGAGTTCACTAAAAAATCCA
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2355422 87 -   3067355 TTTTATAGCCTGTTGCTATAAATTGCCTCACAAACCTATGAGCCAAAGATACCACGACAAAATAGAGTGAGTTCACCAAAAAATCCA
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126571992 87 - 158406734 TTTTATGGTTTTTTGCTGTAAACTGCCTCACAAACCTATTAGCCAAAAATACTTAGACAAAATAGAGTGAGTTCACCAAAAAATCCA
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             192252 83 +   3820305 TTTTATGGTCTTTTGCTGTAAACTGCCTCACAAACCTATT----AAAGATACCTAGACAAAATAGAGTGAGTTCACCAAAAAATCCA
i cebCap1.NW_016107522v1          C 0 I 1453
s otoGar3.GL873742                  1947755 83 -   2232465 TTTTACAGCCTTTTGTTATCAACTGTCTCAAAAATATATT----AAAGATGCCTACACAAAATCAAGTAAATTCAGCAAAATCTTAA
i otoGar3.GL873742                I 300 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T

a score=52736.000000
s hg38.chr6_GL000254v2_alt           558446 7 +   4827813 CATCATT
s panTro5.chr6                     29530897 7 + 175400573 CATCATT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29769183 7 + 173848474 CATCATT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5571999 7 +   6154872 CATCATT
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      5600 7 +     39990 CATCATT
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29800394 7 + 172585720 CGTCATT
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29462696 7 - 170955103 CGTCATT
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2449228 7 -   2996164 CGTCATT
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             213716 7 +    766320 CGTCATT
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28725940 7 -  71996105 CGTCATT
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             186938 7 -    352859 CGTCATT
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2355509 7 -   3067355 CGTCATT
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126572079 7 - 158406734 CGTCATT
i calJac3.chr6                    C 0 I 1773
s otoGar3.GL873742                  1947838 7 -   2232465 TGTCATT
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e cebCap1.NW_016107522v1             192335 1453 +   3820305 I

a score=7584.000000
s hg38.chr6_GL000254v2_alt           558453 2 +   4827813 AA-
s panTro5.chr6                     29530904 2 + 175400573 AA-
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29769190 2 + 173848474 AA-
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5572006 2 +   6154872 AA-
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      5607 2 +     39990 AA-
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29800401 2 + 172585720 AA-
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29462703 2 - 170955103 AA-
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2449235 2 -   2996164 AA-
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             213723 2 +    766320 AA-
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28725947 2 -  71996105 AA-
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             186945 2 -    352859 AA-
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2355516 2 -   3067355 AA-
i colAng1.NW_012115566v1          C 0 C 0
s otoGar3.GL873742                  1947845 2 -   2232465 -AC
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e cebCap1.NW_016107522v1             192335 1453 +   3820305 I
e calJac3.chr6                    126572086 1773 - 158406734 I

a score=18512.000000
s hg38.chr6_GL000254v2_alt           558455 3 +   4827813 AAG
s panTro5.chr6                     29530906 3 + 175400573 AAG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29769192 3 + 173848474 AAG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5572008 3 +   6154872 AAG
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      5609 3 +     39990 AAG
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29800403 3 + 172585720 AAG
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29462705 3 - 170955103 AAG
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2449237 3 -   2996164 AAG
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             213725 3 +    766320 AAG
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28725949 3 -  71996105 AAG
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             186947 3 -    352859 AAG
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2355518 3 -   3067355 AAG
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126573859 3 - 158406734 AAA
i calJac3.chr6                    I 1773 C 0
s otoGar3.GL873742                  1947847 3 -   2232465 CTG
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e cebCap1.NW_016107522v1             192335 1453 +   3820305 I

a score=97671.000000
s hg38.chr6_GL000254v2_alt           558458 11 +   4827813 AACAGTGCAAA
s panTro5.chr6                     29530909 11 + 175400573 AACAGTGCAAA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29769195 11 + 173848474 AACAGTGCAAA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5572011 11 +   6154872 AACAGTGCAAA
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      5612 11 +     39990 AACAGTGCAAA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29800406 11 + 172585720 AACAGTGCAAA
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29462708 11 - 170955103 AACAGTGCAAA
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2449240 11 -   2996164 AACAGTGCAAA
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             213728 11 +    766320 AACAGTGCAAA
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28725952 11 -  71996105 AACAGTGCAAA
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             186950 11 -    352859 AACAGTGCAAA
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2355521 11 -   3067355 AACAGTTCAAA
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126573862 11 - 158406734 AACAGTGCAAA
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             193788 11 +   3820305 aaCAGTGCAAA
i cebCap1.NW_016107522v1          I 1453 C 0
s otoGar3.GL873742                  1947850  9 -   2232465 --AAATGCAAA
i otoGar3.GL873742                C 0 I 1173
e canFam3.chr35                    26204327 64688 +  26524999 T

a score=728391.000000
s hg38.chr6_GL000254v2_alt           558469 96 +   4827813 GCTCTATTTCCTGTACTGTGAGCATGTCCACTTTCTGTGGCTCCCGGTGGTGAGACAGATGAGAAGCTGGAACACAGATAAAAGGTTTTTGGGAAC
s panTro5.chr6                     29530920 96 + 175400573 GCTCTATTTCCTGTACTGTGAGCATGTCCACTTTCTGTGGCTCCCGGTGGTGAGACAGATGAGAAGCTGGAACACAGATAAAAGGTTTTTGGGAAC
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29769206 96 + 173848474 GCTCTATTTCCTGTACTGTGAGCATGTCCACTTTCTGTGGCTCCCGGTGGTGAGACAGATGAGAAGCTGGAACACAGATAAAAGGTTTTTGGGAAC
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5572022 96 +   6154872 GCTCTATTTCCTGTACTGTGAGCATGTCCACTTTCTGTGGCTCCCGGTGGTGAGACAGATGAGAAGCTGGAACACAGATAAAAGGTTTTTGGGAAC
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      5623 96 +     39990 GCTCTATTTCCTGTACTGTGAGCATGTCAACTTTCTGTGGCTCCCGGTGGTGAGACAGATGAGAAGCTGGAACACAGATAAAAGGTTTTTGGTAAC
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29800417 96 + 172585720 GCTCTATTTCCTGTACTGTGAGCATGTCCACTTTCTGTGGTTCCCAGTGTTAAGACAGATGAGAAGCTGGAACACAGAGAAAAGGTTTTTGGGAAC
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29462719 96 - 170955103 GCTCTATTTCCTGTACTGTGAGCATGTCCACTTTCTGTGGTTCCCAGTGTTAAGACAGATGAGAAGCTGGAACACAGAGAAAAGGTTTTTGGGAAC
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2449251 96 -   2996164 GCTCTATTTCCTGTACTGTGAGCATGTCCACTTTCTGTGGTTCCCAGTGTTAAGACAGATGAGAAGCTGGAACACAGAGAAAAGGTTTTTGGGAAC
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             213739 96 +    766320 GTTCTATTTCCTGTACTGTGAGCATGTCCACTTTCTGTGGTTCTCAGTGTTAAGACAGATGAGAAGCTGGAACACAGAGAAAAGGTTTTTGGGAAC
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28725963 96 -  71996105 GCTCTATTTCCTGTACTGTGAGCATGTCCACTTCCTGTGGCTCCTGGTGTTAAGACAGATGAGAAGCTGGAACACAGAGAAAAGGTTTTTGGGAAC
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             186961 96 -    352859 GCTCTATTTCCTGTACTGTGAGCATGTCCACTTTCTGTGGTTCTCAGTGTTAAGACAGATGAGAAGCTGGAACACAGAGAAAAGGTTTTTGGGAAC
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2355532 96 -   3067355 GCTCTATTTCCTGTACTGTGAGCATGTCCACTTTCTGTGGCTCCCGGTGTTAAGACAGATGAGAAGCTGGAACACAGAGAAAAGGTTTTTGGGAAC
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126573873 95 - 158406734 GCTCTAGTTCCTGGACTGCGAGCATGTTTACTTCCTGTGGGTCCCAGTGGTGAGGCAGATGAGAAGTTGGAACATGGAG-AAAGGTTTTGGGGAAC
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             193799 95 +   3820305 GCTCTAGTTCCTGTACTGTGAGCATGTTTACTTTCTGTGGGTCCCAGTGGTGAGGCAGATGAGAAGTTGGAGCATGGAG-AAAGGTTTTGGGGAAC
i cebCap1.NW_016107522v1          C 0 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1947859 1173 -   2232465 I

a score=610515.000000
s hg38.chr6_GL000254v2_alt           558565 70 +   4827813 ACTTTTGAAGGCCTGTGGCTATATAAGAGAAAGTGAGTTCATTTCCTTAATTCTAGTATAATCTGGAAAA
s panTro5.chr6                     29531016 70 + 175400573 ACTTTTGAAGGCCCGTGGCTATATAAGAGAAAGTGAGTTCATTTCCTTAATTCTAGTATAATCTGGAAAA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29769302 70 + 173848474 ACTTTTGAAGGCCCGTGGCTATATAAGAGAAAGTGAGTTCATTTCCTTAATTCTAGTATAATCTGGAAAA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5572118 70 +   6154872 ACTTTTGAAGGCCCGTGGCTATATAAGAGAAAGTGAGTTCATTTCCTTAATTCTAGTATAATCTGGAAAA
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      5719 70 +     39990 ACTTTTGAAGGCCCGTGGCTATATAAGAGAAAGTGAGTCCATTTCCTTAATTCTAGTATAATCTGGAAAA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29800513 70 + 172585720 ACTTTCGAAGGCCCGTGGCTATATAAGAGAAAGTGAGTTCATTTCCTTAATTCTAGTATAATCTGGAAAA
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29462815 70 - 170955103 ACTTTCGAAGGCCCGTGGCTATATAAGAGAAAGTGAGTTCATTTCCTTAATTCTAGTATAATCTGGAAAA
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2449347 70 -   2996164 ACTTTCGAAGACCCGTGGCTATATAAGAGAAAGTGAGTTCATTTCCTTAATTCTAGTATAATCTGGAAAA
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             213835 70 +    766320 ACTTTCGAAGGCCCGTGGCTATATAAGAGAAAGTGAGTTCATTTCCTTAATTCTAGTATAATCTGGAAAA
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28726059 70 -  71996105 ACTTTTGAAGGCCTGTGGCTGTATAAGAGAAAGTGAGTTCATTTCCTTAATTCTAGTATAATCTGGAAAA
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             187057 70 -    352859 ACTTTCGAAGGCCCGTGGCTATATAAGAGAAAGTGAGTTCATTTCCTTAATTCTAGTATAATCTGGAAAA
i manLeu1.NW_012099655v1          C 0 M 950
s colAng1.NW_012115566v1            2355628 70 -   3067355 ACTTTTGAAGGCCCGTGGCTATACAAGAGAAAGTTAGTTCATTTCCTTAATTCTAGTATAATCTGGAAAA
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126573968 70 - 158406734 ATTCTTGAAGGCCTGTGGCTATATAAGAGAAAGTGAGTCCATTTCCTTAATTCTAGTAAAATTTGGAAAA
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             193894 70 +   3820305 ACTTTTGAAGGCCCATGGCTATATAAGAGAAAGCGAATCCATTTCCTTAATTCTAGTATAATCTGGAAAA
i cebCap1.NW_016107522v1          C 0 C 0
s otoGar3.GL873742                  1949032 69 -   2232465 ATTTTTTAAGGTCCTTGGTTATACCAGAGAAAAAGAGTCCATTT-CTCAATTCTAATAAGATTTGTAATA
i otoGar3.GL873742                I 1173 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T

a score=2234778.000000
s hg38.chr6_GL000254v2_alt           558635 340 +   4827813 GGATCCTAGACATTAT-GCA-TTTTTTTGATCACAGTATTTTTCCCAACCCATGGTTCATTTATACATGGAGTCTGCTATTGGCATGAA-------ATAAAATACATCCTAATATGTA-------------TTATGAAAAAAACGCTTATTGTATTTATT----TATTCTATTAAAGCAGTATATTTCTCAGAGGTTGAATGTTG-GGGGTTTT-TGTGGTCATTTAATAAAAATGTTAACATATTCTTGAGTTTGTTTGTTTAACTTAGAAGTAT-AAATAGAACTCAAAATAATTGAACATTGAAACTACTGTGttgcattggaataaacatggatatattatgttgagaaaatcacatgtattttt
s panTro5.chr6                     29531086 340 + 175400573 GGATCCTAGACATTTT-GCA-TTTTTTTGATCACAGTATTTTTCCCAACCCATGGTTCATTTATACATGGAGTCTGCTATTGGCATGAA-------ATAAAATACATCCTAATATGTA-------------TTATGAAAAAAACTCTTATTGTATTTATT----TATTCTATTAAAGCAGTATATTTCTCAGAGGTTGAATGTTG-GGAGTTTT-TGTGGTCATTTAATAGAAATGTTAACATATTCTTGGGTTTGTTTGTTTAACTTAGAAGTAT-AAATAGAACTCAAAATAATTGAACATTGAAACTACTGTGttgcattggaataaacatggatatattatgttgagaaaatcgcatgtattttt
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29769372 340 + 173848474 GGATCCTAGACATTTT-GCA-TTTTTTTGATCACAGTATTTTTCCCAACCCATGGTTCATTTATACATGGAGTCTGCTATTGGCATGAA-------ATAAAATACATCCTAATATGTA-------------TTATGAAAAAAACGCTTATTGTATTTATT----TATTCTATTAAAGCAGTATATTTCTCAGAGGTTGAATGTTG-GGAGTTTT-TGTGGTCATTTAATAAAAATGTTAACATATTCTTGGGTTTGTTTGTTTAACTTAGAAGTAT-AAATAGAACTCAAAATAATTGAACATTGAAACTACTGTGttgcattggaataaacatggatatattatgttgagaaaatcgcatgtattttt
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5572188 341 +   6154872 GGATCCTAGACATTAT-GCATTTTTTTTGATCACAGTATTTTTCCCAACCCATGGTTCATTTATACATGGAGTCTGCTATTGGCATGAA-------ATAAAATACATCCTAATATGTA-------------TTATGAAAAAAACGCTTATTGCATTTATT----TATTCTATTAAAGCAGTATATTTCTCAGAGGTTGAATGTTG-GGGGTTTT-TGTGGTCATTTAATAAAAATGTTAACATATTCTTGGGTTTGTTTGTTTAACTTAGAAGTAT-AAATAGAACTCAAAATAACTGAACGTTGAAACTACTGTGttgcattggaataaacatggatatattatgttgagaaaatcgcatgtattttt
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      5789 335 +     39990 GGATCCTAGACATTAT-GCA-TTTTTTTGATCACAGTATTTTTCCCAACCCATGGCTCATTTATACATGGAGTCTGCTATTGGCATGAA-------ATAAAATACATCCTAATATGTA-------------TTATG-AAAAAATGCTTATTGTATTTATT---------TATTAAAGCAGTATATTTCTCAGAGGTTGAATGTTGTGGGGTTTT-TGTGGTCATTTAATAAAAATGTTAACATATTCTTGGGTTTGTTTGTTTAACTTAGAAGTAT-AAATAGAACTCAAAATAATTGAACATTGAAACTACTATGTTGCATTGGAATAAACATGGATATATTATGTTGAGAAAATCGCATGTATTTTT
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29800583 345 + 172585720 GGATCCTAGACATTAT-GAA-TTTTTTGGATCACAGTATTTTTCCCAACCCATGACTCATTTTTACATGGAGTCTGCTATTGGCATGAA-------ATAAAATACATCCTAATATGTA-------------TTATGAAAAAAATGCttattgtatttatttatttattctattAAAGGAGTATGTTTCTCAGAGGTTAAATGTTGTGGGGTTTT-TGGGGTCACTTAATAAAAATGTTAACATATTCTTGTTTTTGTTTGTTTAACTTAGAAGTAT-AAATAGAACTCAAAATAATTGAACATTGAAACTACTAttctgcattggaataaacatggatatattatgttgagaaaatcgcatgtattttt
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29462885 345 - 170955103 GGATCCTAGACATTAT-GAA-TTTTTTGGATCACAGTATTTTTCCCAACCCATGACTCATTTTTACATGGAGTCTGCTATTGGCATGAA-------ATAAAATACATCCTAATATGTA-------------TTATGAAAAAAATGCttattgtatttatttatttattctattAAAGGAGTATGTTTCTCAGAGGTTAAATGTTGTGGGGTTTT-TGGGGTCACTTAATAAAAATGTTAACATATTCTTGTTTTTGTTTGTTTAACTTAGAAGTAT-AAATAGAACTCAAAATAATTGAACATTGAAACTACTAttctgcattggaataaacatggatatattatgttgagaaaatcgcatgtattttt
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2449417 345 -   2996164 GGATCCTAGACATTAT-GAA-TTTTTTGGATCACAGTATTTTTCCCAACCCATGACTCATTTTTACATGGAGTCTGCTATTGGCATGAA-------ATAAAATACATCCTAATATGTA-------------TTATGAAAAAAATGCttattgtatttatttacttattctattAAAGGAGTATGTTTCTCAGAGGTTAAATGTTGTGGGGTTTT-TGGGGTCACTTAATAAAAATGTTAACATATTCTTGTTTTTGTTTGTTTAACTTAGAAGTAT-AAATAGAACTCAAAATAATTGAACATTGAAACTACTAttctgcattggaataaacatggatatattatgttgagaaaatcgcatgtattttt
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             213905 345 +    766320 TGATCCTAGACGTTAT-GAA-TTTTTTGGATCACAGTATTTTTCCCAACCCATGACTCATTTTTACATGGAGTCTGCTATTGGCATGAA-------ATAAAATACATCCTAATATGTA-------------TTATGAAAAAAATGCttattgtatttatttatttattctattAAAAGAGTATGTTTCTCAGAGGTTAAATGTTGTGGGGTTTT-TGGGGTCACTTAATAAAAATGTTAACATATTCTTGTTTTTGTTTGTTTAACTTAGAAGTAT-AAATAGAACTCAAAATAATTGAACATTGAAACTACTAttctgcattggaataaacatggatatattacgttgagaaaatcgcatgtattttt
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28726129 345 -  71996105 GGATCCTAGACATTAT-GAA-TTTTTTGGATCACAGTATTTTTCCCAACCCATGACTCATTTTTACATGAAGTCTGCTATTGGCATGAA-------ATAAAATACATCCTAATATGTA-------------TTATGAAAAAAATGCTTATTGTATTTATTTATTTATTCTATTAAAGGAATATGTTTCTCAGAGGTTAAATGTTGTGGGGTTtt-tggggtcacttaataaaaatgttaaCATGTTCTTGTTTTTGTTTGTTTAACTTAGAAGTAT-AAATAGAACTCAAAATAATTGAACATTGAAACTACTATTCTGCATTGGAATAAACATGGATATATTATGTTGAGAAAATCGCATGTATTTTT
i chlSab2.chr17                   C 0 C 0
s colAng1.NW_012115566v1            2355698 346 -   3067355 GGATCCTAGACGTTAT-GAA-TTTTTTGGATCACAGTATTTTTCCCAACCCATGACTCGTTTTCACACGGAGTCTGCTATTGGCATGAA-------ATAAAATACATCCTAACATGTA-------------TTATGAAAAAAATGCttattgtatttatttatttattctattAAAGGAGTATGTTTCTCAGAGGCTAAATGTTGTGGGGTTTTGGGGGGTCACTTAATAAAAATGTTAACATATTCTTGTTTTTGTTTGTTTATCTTAGAAGTAT-AAATAGAACTCAAAATAATTCAACATTGAAACTACTATTCTGCATTGGAATAAACATGGATGTATTATGTTGAGAAAATCTCATGTATTTTT
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126574038 340 - 158406734 GGATCCTAGACATTAT-AAA-TTTTTTTGATTACAGTATTTTTCCCAACCCATGACTCATTTTTACATGGAAACTACTATTGGCATG------------AAATATATCCtaggatatatttaggaatatatttagg-aaAAAATGCTTATTACATTTATCTATTCATTCTACTAAAGCTGTATATTCTTCAGAGGTTGTATGTTGCAGGGTTTT-GGGGATC-----ATAAAAATGTTGACATATTCTT--GTTTGTTTGTTTAACTTAGAAGTGTAAAATACAACTCAAAATAATTGAACACTGAAACTACTATTTTGCATTGGA--AAAAA-GGAAATATCATGT---GAAAATTGAATGTATTTTT
i calJac3.chr6                    C 0 I 105
s cebCap1.NW_016107522v1             193964 331 +   3820305 GGATCCTAGACATTAT-GAA-TTTTTTTGATTACAGTATTTTTCCCAACCCATGTCTCATTTTTACATGGAACCTACTATTGGCATGAA-------ATAAAATATATCCTAATATGTG-------------TTATG-AAAAAATGCTTATTA----TGTTTATTCATTCTTCTAAAGCTGTATATTCTTCAGAGGCTGAATGTTGCAGGGTCTT-GGGGATC-----ATAAAAATGTTAACATATTCTTAAGTTTGTTTGTTTAACTTAGAAGTGT-AAATACAACTCAAAATAATTGAACATTGAAACTACTATTTTGCATTGGAACACACA-TAATATATTATGT---GAAAATCACATGTAttttt
i cebCap1.NW_016107522v1          C 0 I 114
s otoGar3.GL873742                  1949101 337 -   2232465 GTATCCCAAGCATTGCAGAA-ATTTCTTGATCACAGTGTTTCTCACAACTCATAAC-CATTGTTACATGGAACCTCACATTGTTATGAATTAAAACATAAAATATGACTTCATTGGTA-------------TTATGAAAAAAATGTTCATTGTATTAATTTATTCATTCTATTAAAACAGTGTATTTATCAGAAGTTGTATATTGTGGGATATT-TGAGGTCACTAAATAAAAATGTT-ACATCTTCATGA----GTTTGTTTTACTTAGAAGTCT-AGATAAAACTTGAACTACTTGAACATTGATGCTACT---TTGAATTGGAACTAACATGAATA-------CTGTGGAAATTTCATGaattttt
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e manLeu1.NW_012099655v1             187127 950 -    352859 M

a score=27786.000000
s hg38.chr6_GL000254v2_alt           558975 5 +   4827813 aaatt
s panTro5.chr6                     29531426 5 + 175400573 aaata
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29769712 5 + 173848474 aaata
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5572529 5 +   6154872 aaata
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      6124 5 +     39990 AAATA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29800928 5 + 172585720 aaata
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29463230 5 - 170955103 aaata
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2449762 5 -   2996164 aaata
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             214250 5 +    766320 aaata
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28726474 5 -  71996105 AAATA
i chlSab2.chr17                   C 0 C 0
s colAng1.NW_012115566v1            2356044 5 -   3067355 AAATA
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126574483 5 - 158406734 ATATA
i calJac3.chr6                    I 105 C 0
s otoGar3.GL873742                  1949438 5 -   2232465 aaaaa
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e cebCap1.NW_016107522v1             194295 114 +   3820305 I
e manLeu1.NW_012099655v1             187127 950 -    352859 M

a score=27724.000000
s hg38.chr6_GL000254v2_alt           558980 4 +   4827813 aaaa
s panTro5.chr6                     29531431 4 + 175400573 aaaa
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29769717 4 + 173848474 aaaa
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5572534 4 +   6154872 aaaa
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      6129 4 +     39990 AAAA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29800933 4 + 172585720 gaaa
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29463235 4 - 170955103 gaaa
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2449767 4 -   2996164 gaaa
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             214255 4 +    766320 gaaa
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28726479 4 -  71996105 GAAA
i chlSab2.chr17                   C 0 C 0
s colAng1.NW_012115566v1            2356049 4 -   3067355 AAAA
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126574488 4 - 158406734 AAAA
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             194409 4 +   3820305 AAAA
i cebCap1.NW_016107522v1          I 114 C 0
s otoGar3.GL873742                  1949443 4 -   2232465 aaaa
i otoGar3.GL873742                C 0 I 288
e canFam3.chr35                    26204327 64688 +  26524999 T
e manLeu1.NW_012099655v1             187127 950 -    352859 M

a score=83704.000000
s hg38.chr6_GL000254v2_alt           558984 13 +   4827813 tatgggtgcttgg
s panTro5.chr6                     29531435 13 + 175400573 tatgggtgcttgg
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29769721 13 + 173848474 tatgggtgcttgg
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5572538 13 +   6154872 tatgggtgcttgg
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      6133 13 +     39990 TATGGGTGCTTGG
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29800937 13 + 172585720 tacgggtgcttgg
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29463239 13 - 170955103 tacgggtgcttgg
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2449771 13 -   2996164 tacgggtgcttgg
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             214259 13 +    766320 tacgggtgcttgg
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28726483 13 -  71996105 TAcgggtgcttgg
i chlSab2.chr17                   C 0 C 0
s colAng1.NW_012115566v1            2356053 13 -   3067355 AACGGGTGCTTGG
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126574492 13 - 158406734 TATGGGCACTTAG
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             194413 13 +   3820305 TATGGGTGCTTAG
i cebCap1.NW_016107522v1          C 0 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1949447 288 -   2232465 I
e manLeu1.NW_012099655v1             187127 950 -    352859 M

a score=816186.000000
s hg38.chr6_GL000254v2_alt           558997 115 +   4827813 agaaatgttttgctgatgtgggtggctgctcaagatatgtcccccaagcccTAGAAATATATTTTGATTCACTTTCATTATTA---CAGATATGCCAGAGAA-AAATTTTATCTTTAAA
s panTro5.chr6                     29531448 115 + 175400573 agaaatgttttgctgatgtgggtggctgctcaagatatgtcccccaagcccTAGAAATATATTTTGATTCACTTTCATTATTA---CAGATATGCCAGAGAA-AAATTTTATCTTTAAA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29769734 115 + 173848474 agaaatgttttgctgatgtgggtggctgctcaagatatgtcccccaagcccTAGAAATATATTTTGATTCACTTTCATTATTA---CAGATATGCCAGAGAA-AAATTTTATCTTTAAA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5572551 115 +   6154872 agaaatgttttgctgatgtgggtggctgctcaagatatgtcccccaagcccTAGAAATATATTTTGATTCACTTTCATTATTA---CAGATATGCCAGAGAA-AAATTTTATCTTTAAA
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      6146 115 +     39990 AGAAATGTTTTGCTGATGTGGGTGGCTGCTCAAGATAGGTCCCCCAAGCCCTAGAAATATATTTTGATTCACTTTCATTATTA---CAGATATGCCAGAGAA-AAATTTTATCTTTAAA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29800950 115 + 172585720 agaaatgttttgctgatgtgggtggctgctcaagatatgtccccaaagctctcgaaatacattttgattcactttcATTATTA---CAGCTATGCCAGAGAA-AAATTTTATCTTTAAA
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29463252 115 - 170955103 agaaatgttttgctgatgtgggtggctgctcaagatatgtccccaaagctctcgAAATACATTTTGATTCACTTTCATTATTA---CAGCTATGCCAGAGAA-AAATTTTATCTTTAAA
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2449784 115 -   2996164 agaaatgttttgctgatgtgggtggctgctcaagatatgtccccaaagctctcgaaatacattttgattcactttcATTATTA---CAGCTATGCCAGAGAA-AAATTTTATCTTTAAA
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             214272 115 +    766320 agaaatgttttgctgatgtgggtggctgctcaagatatgtccccaaagctctcgaaatacattttgattcactttcattatta---cagatatgccagagaa-aaattttATCTTTAAA
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28726496 115 -  71996105 agaaatgttttgctgatgtgggtggctgctcaagatatgtccccaaagctctcgaaatacattttgattcactttcattatta---cagatatgccagagaa-aaattttatctttaaa
i chlSab2.chr17                   C 0 C 0
s colAng1.NW_012115566v1            2356066 115 -   3067355 AAAAATGTTCTGCTGATGTGGGTGGCTGCTCAAGATATGTCCCCAAAGGCCTCAAAATACATTTTGATTCTCTTTCTTTATTA---CAGATACGCCAGAGAA-AAATTTTATCTTTAAA
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126574505 115 - 158406734 AGAAATGTTTCGCTGATGTGGATGGCTGCTCAAAATATGTCTCCTAAGCCTTAGGAATACATTTTGGTTCACTTTCAATATTA---CAGATGTGCCAGAGAA-AAATTTTATCTTGAAA
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             194426 115 +   3820305 AGAAATGTTTCGCTGATTCGGGTGGCTGCTCAAAACCTGTCCCCTAAGCCTTAGAAATACATTTTGGTTCACTTTCAATATTA---CAGATATGCCAGAGAa-aaattttatctttaaa
i cebCap1.NW_016107522v1          C 0 C 0
s otoGar3.GL873742                  1949735 119 -   2232465 AGGAAATTTTTACTAATGTAGGATATTGTTCCAGATATTTCCCCTAATCCTAAGAAATATATTTTGATTCACCTTCAACTTTAACCCATTTATGCCAAAGGATGAATTTTTTGCATAAA
i otoGar3.GL873742                I 288 I 3719
e canFam3.chr35                    26204327 64688 +  26524999 T
e manLeu1.NW_012099655v1             187127 950 -    352859 M

a score=444094.000000
s hg38.chr6_GL000254v2_alt           559112 68 +   4827813 CAGTTTTAAATTTTTGACTTTATAAAGGTATAATATTTCTGCATGTATGCTGCCTGAGATTTTGGAAG
s panTro5.chr6                     29531563 68 + 175400573 CAGTTTTAAATTTTTGACTTTATAAAGGTATAATATTTCTGCATGTATGCTGCCTGAGATTTTGGAAG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29769849 68 + 173848474 CAGTTTTAAATTTTTGACTTTATAAAGGTATAATATTTCTGCATGTATGCTGCCTGAGATTTTGGAAG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5572666 68 +   6154872 CAGTTTTAAATTTTTGACTTTATAAAGGTATAATATTTCTGCATGTATGCTGCCTGAGATTTTGGAAG
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      6261 68 +     39990 CAGTTTTAAATTTTTGACTTTATAAAGGTACAACATTTCTGCATGTATGCTGCCTGAGATTTTGGAAG
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29801065 68 + 172585720 TAATTTAAAATTTTTGACTTTATAAAGGTATAATGTTTCTGCATGTATGCTGCCTGAGATTTTGGAAG
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29463367 68 - 170955103 TAATTTAAAATTTTTGACTTTATAAAGGTATAATGTTTCTGCATGTATGCTGCCTGAGATTTTGGAAG
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2449899 68 -   2996164 TAATTTAAAATTTTTGACTTTATAAAGGTATAATGTTTCTGCATGTATGCTGCCTGAGATTTTGGAAG
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             214387 68 +    766320 TAATTTAAAATTTTTGACTTTATAAAGGTATAATGTTTCTGCATATATGCTGCCTGAGATTTTGGAAG
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28726611 68 -  71996105 taattTAAAATTTTTGACTTTATAAAGGTATAATGTTTCTGCATGTATGCTGCCTGAGACTTTGGAAG
i chlSab2.chr17                   C 0 C 0
s colAng1.NW_012115566v1            2356181 68 -   3067355 CAATGTAAAATTTTTGACTTTATAAAGGTATAATGTTTCTGCATGTATGCTGCCTGAGATTTTGGAAG
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126574620 68 - 158406734 AAGTTTAAAATTTTTGACTTTATAAAGGTATAATATTTCTGCATGTATGCTGCCTGAGATTTCAGAAG
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             194541 67 +   3820305 aagtttaaaa-ttttgactttataaaggtataatATTTCTGCATATATGCCACCTGAGATTTCAGAAG
i cebCap1.NW_016107522v1          C 0 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1949854 3719 -   2232465 I
e manLeu1.NW_012099655v1             187127 950 -    352859 M

a score=2482016.000000
s hg38.chr6_GL000254v2_alt           559180 370 +   4827813 GCTATATATTTAAATATATCATTAAATAAATTATAGTA-----CCTGTACTATCAAGCAAGCAAATCAAAATAAGGCAATGTTGAACAAGT----------TTAATAAGGAAATATTTTAAGTATTCCTGAAAGTATTACCAAAACATTAGTAAAGTTATTAAATATTAAAAGT-------TACTAAATATTACATCAATTATGCAAATAATTGGCAAGCCATTAAATA-GAAATAGGCCCTGTGCTAT---AGGAGCAGTAGGAAAACATATTCAATAAGG------------------------------------------TAAAAATATTTATAT-CAGAACAAAGTCTACTATCATATTTATTCTAGGAGAAGTGGATAATTCCCAACACTTTTAGAAATAATAGAAATTTTCTGACTCTCATCACAGTTATAT
s panTro5.chr6                     29531631 369 + 175400573 GCtatatatttaaatatatcattaaataaattata-ta-----CCTGTACTATCAAGCAAGCAAATCAAAATAAGGCAATGTTGAACAAGT----------TTAATAAGGAAATATTTTACGCATTCCTGAAAGTATTACCAAAACATTAGTAAAGTTATTAAATATTAAAAGT-------TACTAAATATTACATCAATTATGCAAATAATTGGCAAGCCATTAAATA-GAAATAGGCCCTGTGCTAT---AGGAGCAGTAGGAAAACATATTCAATAAGG------------------------------------------TAAAAATATTTATAT-CAGAACAAAGTCTACTATCATATTTATTCTAGGAGAAGTGGATAATTCCCAACACTTTTAGAAATAATAGAAATTTTCTGACTCTCATCACAGTTATAT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29769917 369 + 173848474 GCtatatatttaaatatatcattaaataaattata-ta-----CCTGTACTATCAAGCAAGCAAATCAAAATAAGGCAATGTTGAACAAGT----------TTAATAAGGAAATATTTTACGCATTCCTGAAAGTATTACCAAAACATTAGTAAAGTTATTAAATATTAAAAGT-------TACTAAATATTACATCAATTATGCAAATAATTGGCAAGCCATTAAATA-GAAATAGGCCCTGTGCTAT---AGGAGCAGTAGGAAAACATATTCAATAAGG------------------------------------------TAAAAATATTTATAT-CAGAACAAAGTCTACTATCATATTTATTCTAGGAGAAGTGGATAATTCCCAACACTTTTAGAAATAATAGAAATTTTCTGACTCTCATCACAGTTATAT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5572734 369 +   6154872 GCTATATATTTAAATCTATCATT-AATAAATTATAGTA-----CCTGTACTATCAAGCAAGCAAATCAAAATAAGGCAATGTTGAACAAGT----------TTAATAAGGAAATATTTTAAGTATTCCTGAAAGTATTACCAAAACATTAGTAAAGTTATTAAATATTAAAAGT-------TACTAAATATTACATCAATTATGCAAATAATTGGCAAGCCATTAAATA-GAAGTAGGCCCTGTGCTAT---AGGAGCAGTAGGAAAACATATTCAATAAGG------------------------------------------TAAAAATATTTATAT-CAGAACAAAGTCTACTATCATATTTATTCTAGGAGAAGTGGATAATTTCCAACACTTTTAGAAATAATAGAAATTTTCTGACTCTCATCACAGTTATAT
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      6329 368 +     39990 GCTATATATTTAACTATATCATTAAATAAATTATAGTA-----AGTGTACTATCAAGCAGGCAAATCAAAATAAGGCAATGTTGAACAAGT----------TTAATAAGGAAATATTTTAAGTATTCCTGAAAGCATTACCAAAACATTAGTAAAGTTATTAAATATTAAAAGT-------TACTAAATATTACATCAATTATGCAAATAATTGGCAAGCCATTAAATA-GAAATAGGCCCTGTGCTAT---AGGAGCAGTAGGAAAGCATATTCAATAAGG------------------------------------------TAAAAATATTTATAT-CAGAACAAAGTCTACTATCATATTTGTTCTAGGAGAAGTGGATAATTCCCAACACTTTTAGAAACAATAGAAATTTTCTGA--CTCATCACAGTTATAT
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29801133 367 + 172585720 GCTATATATTTAAATATATCATTAAATAAATTATAGTA-----CCTGTACTATCAGGCAAGCAAATCAAAACAAGGCAATGTTGAACATAT----------TTAATAAGGAAATAGTTTAAGTATTCCTGAAAGTATTACCAaaacat---taaagttattaaatattaaaagt-------tatcaaatattacatCAATTATGCAAATATCCAGCAAGCCATTAAATA-GAAACATGCCCTGTGCTGT---AAGAACAGTAGGAAAACATATTCAATAAGG------------------------------------------TAAAAATATTTATAT-CAGAACCAAGTCTACTATCATATTTATTCTAGGAGCAGTGGATAATTCCCAATACTTTTAGAAACAATAGAAATTTTCTGACTCTCATCACAGTTACAT
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29463435 367 - 170955103 GCTATATATTTAAATATATCATTAAATAAATTATAGTA-----CCTGTACTATCAGGCAAGCAAATCAAAACAAGGCAATGTTGAACATAT----------TTAATAAGGAAATAGTTTAAGTATTCCTGAAAGTATTACCAaaacat---taaagttattaaatattaaaagt-------tatcaaatattacatCAATTATGCAAATATCTAGCAAGCCATTAAATA-GAAACATGCCCTGTGCTGT---AGGAACAGTAGGAAAACATATTCAATAAGG------------------------------------------TAAAAATATTTATAT-CAGAACCAAGTCTACTATCATATTTATTCTAGGAGCAGTGGATAATTCCCAATACTTTTAGAAACAATAGAAATTTTCTGACTCTCATCACAGTTACAT
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2449967 367 -   2996164 GCTATATATTTAAATATATCATTAAATAAATTATAGTA-----CCTGTACTATCAGGCAAGCAAATCAAAACAAGGCAATGTTGAACATAT----------TTAATAAGGAAATAGTTTAAGTATTCCTGAAAGTATTACCAaaacat---taaagttattaaatattaaaagt-------tatcaaatattacatCAATTATGCAAATATCCAGCAAGCCATTAAATA-GAAACATGCCCTGTGCTGT---AGGAACAGTAGGAAAACATATTCAATAAGG------------------------------------------TAAAAATATTTATAT-CAGAACCAAGTCTACTATCATATTTATTCTAGGAGCAGTGGATAATTCCCAATACTTTTAGAAACAATAGAAATTTTCTGACTCTCATCACAGTTACAT
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             214455 367 +    766320 GCTATATATTTAAATATATCATTAAATAAATTATAGTA-----CCTGTACTATCAAGCAAGCAAATCAAAACAAGGCAATGTTGAACATAT----------TTAATAAGGAAATATTTTAAGTATTCCTGAAAGTATTACCAaaacat---taaagttattaaatattaaaagt-------tatcaaatattacatCAATTATGCAAATATCCAGCAAGCCATTAAATA-GAAATATGCCCAGTGCTGT---AGGAACAGTAGGAAAACATATTCAATAAGG------------------------------------------TAAAAATATTTATAT-CAGAACCAAGTCTACTATCATATTTATTCTAGGAGCAGTGGATAATTCCCAATACTTTTAGAAACAATAGAAATTTTCTGACTCTCATCACAGTTACAT
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28726679 367 -  71996105 GCTATATATTTAAATATATCATTAAATAAATTATAGTA-----CCTGTACTATCAAGCAAGCAAAGCAAAACAAGGCAATGTTGAACATAT----------TTAATAAGGAAATATTTTAAGTATTCCTGaaagtattaccaaaacat---taaagttATTAAATATTAAAAGT-------TATCAAATATTACATCAATTATGCACATATCCAGCAAgccattaaaca-gaaatatgccctgtgctgt---aggaacagtaggaaAACACATTCAACAAGG------------------------------------------TAAAAATATTTATAT-CAGAACCAAGTCTACTATCATATTTATTCTAGGAGCAGTGGATAATTCCCAATACTTTTAGAAACAATAGAAATTTTCTGACTCTCATCACAGTTACAA
i chlSab2.chr17                   C 0 C 0
s colAng1.NW_012115566v1            2356249 367 -   3067355 GCTATATATTTAAATATATCGTTAAATAAATTATAATA-----CCTGTACTATCAAGTAAGCAAACCAAAATAAGGCAATGTTGAACATAC----------TTAATAAGGAAATATTTTAAGTATTCCTGAAAATATTACCAaaacat---taaagttattaaatattaaaagt-------tatcaaatattacatCAATTATGCAAATATCCAGCAAGCCATTAAATA-GAAATATGCCCTGTGCTGT---AGGAACAGTAGGAAAACATATTCAATAAGG------------------------------------------TAAAAATATTTATAT-CAGAACCAAGTCTACTATCATATTTATTCTAGGAGCAGTGGATAATTCCCAATACTTTTAGAAACAATAGAAATTTTCTGACTCTCATCACAGTTATAT
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126574688 414 - 158406734 GTTATATATTTAAATATCTCATTAAATAAATTATAGTA-----CCTGTACTATCAAGCAGGCAAATCAAAATAAGTCAATGCTGAACATGT----------CTAATAAGGAAATCTTTTAAGTATTCCTGAAAGTATTATCAAAACATTAGTAAAGTTATTCAATATTAAAAGTTATTAAATATCAAATATTACATCAATTATGCAAATATCCAGCAAGCCAATAAATA-GAAATA--CTCTGTGCTAT----GGAGCAATAGGAAAACATATGCAATAAGGTAAACCTTATTGCATACATAAATCATAAATATTTTTCTGATATAAAAATATTTATAT-CAGAACAAAGTCTATTATCACTTTTATTAGAGGAGCAGTGGAGAATTCACAATACTTTTAGAAACAATTGAAGTTTTCTGA--CTCATCACAGTTATAT
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             194608 373 +   3820305 GTTATATATTTAAATATCTCATTAAATAAATTATAGTA-----CCTGTACTGTCAAGCAGGCAAATCAAAATAAGTCAATGCTGAACATGT----------CTAATAAGGAAATTTTTAAAGTATTCTTGAAAGTATTATCAAAACATTAGTAAAGTtattcaatattaaaagttattaaatatcaaatattacatCAATTATGCAAATATCCAGCAAGCCAATAAATA-GAAATA--CTCTGTGCTAT---AGGAGCAGTAGGAAAACATATGCAATAAGG------------------------------------------TAAAAATATTTATAT-CAGAACAAAGTCTATTATCACCTTTATTAGAGGAGCAGAGGAGAATTCACAATACTTTTAGAAACAATTGAAGTTTCCTGA--CTCATCGCAGTTATAT
i cebCap1.NW_016107522v1          C 0 C 0
s otoGar3.GL873742                  1953573 373 -   2232465 GCAAAATGTTAAACTTTATAACTAATACAACAATAATAACTTCACTGTACTATTAAGCAGGTAAATCAAAATGATATAATGTTGAAAACCTGATTAATGGATTGATAAGGAAACCTTTTTAGTATTACTGAAAATATTACTAAAACATTAGCaaatt------------------------tattaaataatttattaatttGTCAAATGTCCAGCAATCCATTAGATATAAAAAATGCACTGCGATATAAAAGGAGCAGTAGGAAAACATATTCAATAAGG------------------------------------------TATGAATGTTTGTATCCAAAACAAAATCTAGTATTATGTTTGTTAGAGAAGTACTAAATAATTCACAACAATGCCAGGGACAATGGAAGCTCTTCCACTCTCACCACAATTATTT
i otoGar3.GL873742                I 3719 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e manLeu1.NW_012099655v1             187127 950 -    352859 M

a score=3033937.000000
s hg38.chr6_GL000254v2_alt           559550 389 +   4827813 ATTGTTGGTTTGGATTAACTACCCAACATGATTTAAAA--ATAATATTAGTAAATTATTAAAT-AAAAATATTTATTTGTTATATCTTATAAAACAACATAAACAGCAACATTTAAATGAGCTGTTGCTATGATGAGG-TTTATCTTATGATGAAAATG--Cattcctttatttggtaaatatttattgatggcaactatgtacaagtcactgaaataaaa-----ttaga----------catttacctttacatcaaggaatac-aacttttgaaaaaaactg----agaaata----------------aaAAaggcagaactg-agcatccagactaaggcagaatttgtcataaaaagtgtcagaaaagataatgctaaacatagaaaaatctttcacgacttgcagaatgatgtgatttggctctg
s panTro5.chr6                     29532000 393 + 175400573 ATTGTTGGTTTGGATTAACTACCCAACATGATTTAAAA--ATAATATTAGTAAATTATTAAAT-AAAAATATTTATTTGTTATATCTTATAAAACAACATAAACAGCAACATTTAAATGAGCTGTTGCTATGATGAGG-TTTATCTTATGATGAAAATG--TattcctttatttggtaaatatttattgatggcaactatgtacaagtcactgAAATAAAA-----TTAGA----------CATTTACCTTTACATCAAGGAATAC-AACTTTTGAAAAAAACTGTGAAATAAATA----------------AAAAaggcagaactg-agcatccagactaaggcagaatttgtcataaaaagtgtcagaaaagataatgctaaacatagaaaaatctttcacgacttgcagaatgatgtgatttggctctg
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29770286 393 + 173848474 ATTGTTGGTTTGGATTAACTACCCAACATGATTTAAAA--ATAATATTAGTAAATTATTAAAT-AAAAATATTTATTTGTTATATCTTATAAAACAACATAAACAGCAACATTTAAATGAGCTGTTGCTATGATGAGG-TTTATCTTATGATGAAAATG--Tattcctttatttggtaaatatttattgatggcaactatgtacaagtcactgaaataaaa-----ttaga----------catttacctttacatcaaggaatac-aacttttgaaaaaaactgagaaataaata----------------aaAAaggcagaactg-agcatccagactaaggcagaatttgtcataaaaagtgtcagaaaagataatgctaaacatagaaaaatctttcacgacttgcagaatgatgtgatttggctctg
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5573103 393 +   6154872 ACTGTTGGTTTGGATTAACTACCCAACAGGATTTAAAA--ATAATATTAGTAAATTATTAAAT-AAAAATATTTATTTGGTATATCTTAAAAAACAACATAAACAGCAACATTTAAATGAGCTGTTGCTATGATGAGG-TTTATCTTGTGATGAAAATGTTTattcctttatttggtaaatatttattgatggcaactatgtacaactcactgAAATAAAA-----TTAGA----------CATTCACCTTTACATCAAGGAATAC-AACTTTTGAAAAAAACTGAGAAATAAATA----------------AAAAaggcagaactg-agcatc--gactaaggcagagtttgtcataaaaagtgtcagaaaagataatgctaaacatagaaaaatctttcacgacttgcagaatgatgtgatttggctctg
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      6697 389 +     39990 ATTGTTGGTTTGGATTAACTACACAACACGATTTAAAA----AATATTAGTAAATTAT----T-AACAATATGTATTTGGTATATGTTATAAAACAACATAAACAGCAACATTTAAATGAGCTGTTGCTATGATGAGG-TTTATCTTATGATGAAAATGTTTattcctttatttggtaaatatttattgatggcaactatgtataagtcactgAAATAAAA-----TTAGA----------CATTCACCTTTACATCAAGGAATAC-AACTTTTGAAAAAAACTGAGAAATAAATA----------------Aaagagacagaactg-agcatccagactaaggcagaatttgtcttaaaaagtgtcagaaaagataatgctaaacatagaaaaatctttcacgacttgcagaatgatgtggtttggctctg
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29801500 385 + 172585720 ATTGTTGATTTGGATTAACTACCCAATACAACTTAAAA--ATAATATTAGTAAATTATTAAAT-AAAAA----CATTTGGTATATGTTATAAAACAACAAAAACAGCATCATTTAAATGAGCTGTTGCTATGATTAAG-TTTATCTTATGATGAAAATGTTTATTCCTTTATTTGGTAAATATTTTCTGATGGCAACTATGTACAAGTTGCTGAAATAAAA-----TTAGA----------TATTCACCTTTATATCAAGGAGTAC-AACTTTTGAACAAAAC------AGAAATA----------------Aaagagacagaactg-agcgaccagactaaggcagaatttgtcataaaaagcgtcagaaaagataatgctaaacatagaaaaatctttcacgacttgcagaatgatatgatttggctcgg
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29463802 385 - 170955103 ATTGTTGATTTGGATTAACTACCCAATACAACTTAAAA--ATAATATTAGTAAATTATTAAAT-AAAAA----CATTTGGTATATGTTATAAAACAACAAAAACAGCATCATTTAAATGAGCTGTTGCTATGATTAAG-TTTATCTTATGATGAAAATGTTTATTCCTTTATTTGGTAAATATTTTCTGATGGCAACTATGTACAAGTTGCTGAAATAAAA-----TTAGA----------TATTCACCTTTATATCAAGGAGTAC-AACTTTTGAACAAAAC------AGAAATA----------------Aaagagacagaactg-agcgaccagactaaggcagaatttgtcataaaaagcgtcagaaaagataatgctaaacatagaaaaatctttcacgacttgcagaatgatatgatttggctcgg
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2450334 385 -   2996164 ATTGTTGATTTGGATTAACTACCCAATACAACTTAAAA--ATAATATTAGTAAATTATTAAAT-AAAAA----CATTTGGTATATGTTATAAAACAACAAAAACAGCATCATTTAAATGAGCTGTTGCTATGATTAAG-TTTATCTTATGATGAAAATGTTTATTCCTTTATTTGGTAAATATTTTCTGATGGCAACTATGTACAAGTTGCTGAAATAAAA-----TTAGA----------TATTCACCTTTATATCAAGGAGTAC-AACTTTTGAACAAAAC------AGAAATA----------------Aaagagacagaactg-agcgaccagactaaggcagaatttgtcataaaaagcgtcagaaaagataatgctaaacatagaaaaatctttcacgacttgcagaatgatatgatttggcttgg
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             214822 385 +    766320 ATTGTTGATTTGGATTAACTACCCAATACAACTTAAAA--ATAATATTAGTAAATTATTAAAT-AAAAA----TATTTGGCATATGTTATAAAACAACAAAAACAGCATCATTTAAATGAGCTGTTGCTATGATGAAG-TTTATCTTATGATGAAAATGTTTATTCCTTTATTTGGTAAATATTTTCTGATGGCAACTATGTACAAGTTGCTGAAATAAAA-----TTAGA----------TATTCACCTTTATATCAAGGAGTAC-AACTTTTGAACAAAAC------AGAAATA----------------Aaagagacagaactg-agcaaccagactaaggcagaatttgtcataaaaagcgtcagaaaagataatgctaaacatagaaaaatctttcacgacttgcagaatgatatgatttggctcgg
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28727046 385 -  71996105 ATTGTTGATTTGGATTAACTACCCAATACAACTTAAAA--ATAATATTAGTAAATTATTAAAT-AAAAA----TATTTGGCATATGTTATAAAACAACAAAAACAGCATAATTTAAATGAGCTGTTGCTATGATGAAG-TTTATCTTATGATGAAAATGTTTATTCCTTTATTTGGTAAATATTTTTTGATGGCAGCTATGTACAAGTTGCTGAAAGAAAA-----TTAGA----------TATTCACCTTTATATCAAGGAGCAC-AACTTTTGAACAAAAC------AGAAATA----------------AAAGAGACAGAACTG-AGCAACCAGACTAAGGCAGAATTTGTCATAAAAAGCGTCAGAAAAGATAATGctaaacatagaaaaatctttcacgacttgcagaatgatatgatttggctcgg
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             188077 385 -    352859 ATTGTTGATTTGGATTAACTACCCAATACAACTTAAAA--ATAATATTAGTAAATTATTAAAT-AAAAA----TATTTGGCATATGTTATAAAACAACAAAAACAGCATCATTTAAATGAGCTGTTGCTATGATGAAG-TTTATCTTATGATGAAAATGTTTATTCCTTTATTTGGTAAATATTTTCTGATGGCAACTATGTACAAGTTGCTGAAATAAAA-----TTAGA----------TATTCACCTTTATATCAAGGAGTAC-AACTTTTGAACAAAAC------AGAAATA----------------Aaagagacagaactg-agcaaccagactaaggcagaatttgtcataaaaagcgtcagaaaagataatgctaaacatagaaaaatctttcacgacttgcagaatgatatgatttggctcgg
i manLeu1.NW_012099655v1          M 950 C 0
s colAng1.NW_012115566v1            2356616 385 -   3067355 ATTGTTGATTTAGATTAACTACCCAACACAACTTAAAA--ATAATATTAGTAAATTATTAAAT-AAAAA----TACTTGGCATATGTTATAAAAAAACAAAACCAGCATCATTTAAACGAGCTGTTGCTATGATGAAG-TTTATCTTATGATGAAAATGTTTATTCCTTTATTTGGTAAATATTTTTTGATGGCAACTATGTACAAGTTGCTGAAATAAAA-----TTAGA----------TATTCACCTTTATATCAAGGCGTAC-AACTTTTGAACAAAAC------AGAAATA----------------Aaggagacagaactg-agcaaccagactaaggcagaatttgtcataaaaagcgtcagaaaagttaatgctaaacatagaaaaatctttcacgacttgcagaatgatatggtttggctcgg
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126575102 390 - 158406734 ACTGTTGATTTGGATTTACTACCTAACACAATTTGaaa--ataatattagtaaattattaaat-aaaaa----tatttGGTACATGTTATAAAACAACAAAAACAGCAACATTTAAATGAGCTGTTGCTATGATGAGG-TTCATCTTATGGTGAAAATGTTTATTCCTTTTTCTGGCAAATATTTATGGATGACAAGTATGTACAAGTCACCAAAATACAA-----TTAGA----------CATTCACCTCTACATCAAGGAGTAC-AATTTTTTAACAAAACTGAGATATAAA-G----------------AAGGAGACAGAGCTG-AGCATCCAGACTAAGACAGAATTTGTCATAAAAAGCGTCAGAAAAGATAATGCTAAACAGAGATAAGTCTTTCACGATTTGCCATGtgatatggtttggctctg
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             194981 390 +   3820305 ACTGTTGATTTGGATTAACTACCTAACACAATTTGAAA--ATAATATTAGTAAATTATTAAATAAAAAA----TATTTGGTACATGTTATAAAACAACAAAAACAGCAATATTTAAACGAGGTGTTGCTATGATGAGG-TTTATCTTATGGTGAAAATGTTTattcctttatttggcaaatatttatggatgacaagtatgtacaagtcaccgaaatacaa-----ttaga----------cattcacctttacatcaaggagtac-aacttttgaacaaaactgagatgtaaa-G----------------AAGGAGACAGAGCTG-AGCATCCAGACTAAGACAGAATTTGTCATAAAAAGCGTCAGAAAAGATAATGCTAAACAGAGAAGAATCTTTTACGACTT-CCATGtgatatggtttggctctg
i cebCap1.NW_016107522v1          C 0 C 0
s otoGar3.GL873742                  1953946 425 -   2232465 ACTATTGATTTTGATTAACCATTCAACACaatttaaaaaaataatattagtaaattattagat-aaaaa----tGCTTAGTA-ATGTTATGAAACAACAAAAATAGCAACATTTTAATGAGCTGCTGCTATGGTGAGGTTTTGTCTTATGTTGAAAATGTGTatccctttatttgctaaacatttattgatgccaagcatgtataagtcactgaaatagaaacagtttaaaatgaataaatcattggtatttacatcaaggaacacaaaattttgaacaaaactaagatagaaataaagagacagtATAAAtaaagagacaaaggtgaagagtccagactaaggaagagtttcttataaaaagtgtcagaaatgaaaaggttaaatagata-aagtctgtggagatctgcagaggtctctgcttgagtacag
i otoGar3.GL873742                C 0 I 656
e canFam3.chr35                    26204327 64688 +  26524999 T

a score=335285.000000
s hg38.chr6_GL000254v2_alt           559939 43 +   4827813 tgtccccatccaaatctcatctcgattgtaatccccatatgtt
s panTro5.chr6                     29532393 43 + 175400573 tgtccccatccaaatctcatctcgattgtaatccccatatgtt
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29770679 43 + 173848474 tgtccccatccaaatctcatctcgattgtaatccccatatgtt
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5573496 43 +   6154872 tgtccccatccaaatctcatctggattgtaatccccatatgtt
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      7086 43 +     39990 tgtccccatccaaatctcatctcgattgtaatccccatatgtt
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29801885 43 + 172585720 tgtccccatccaaatctcatctcaattgaaatccccatatgtt
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29464187 43 - 170955103 tgtccccatccaaatctcatctcaattgtaatccccatatgtt
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2450719 43 -   2996164 tgtccccatccaaatctcatctcaattgtaatccccatatgtt
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             215207 43 +    766320 tgtccccatccaaatctcatctcaattgtaatccccatatgtt
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28727431 43 -  71996105 tgtccccatccaaatctcaactcaattgtaatccccatatgtt
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             188462 43 -    352859 tgtccccatccaaatctcatctcaattgtaatccccatatgtt
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2357001 43 -   3067355 tgtccccatccaaatctcatctcgattgtaatccccatatgtt
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126575492 43 - 158406734 tgcccctattcaaatctcatctccatggtaatccccaTATGtt
i calJac3.chr6                    C 0 I 99
s cebCap1.NW_016107522v1             195371 43 +   3820305 tgcccctacacaaatctcatctccatggtaatccccatatgtt
i cebCap1.NW_016107522v1          C 0 I 7908
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1954371 656 -   2232465 I

a score=4536177.000000
s hg38.chr6_GL000254v2_alt           559982 674 +   4827813 ----gagggagggaggtgactggatcgtgggggtggtttctcctattctggtctcgtgacagtgagttagttttcatgagatctgatggttttacaagcctctggcatttcccctgcttgcacttctctctcctgccaccatgtga------------agaaggtcagtgcttcctcttcaccttccaccatgattgtaagtttcttgaggcctccccagccatgtggaactgtgagtcaattaaacctcttttctttacaaattacccagtcttgggtatttccttatagcagtatgaaaatggactaatacacagagagagggccctgcttgagtttagctgagcgctgatttgcat--gtgtgtgaggaagctatccaagaatgaggaaagaaccacttaatggattaaggtaaatagtgcccaatgcttatgcaaaggctgggaattttgtgggttctcaagctatttatgtgccagaatgaaaacctaagaattcctgaggcattgagtttggcaatcaaaagtgtcttgcttcaagaatttcaataattagctctaaactaaacactgttctggttttacctaacaaatcttcaaaacaagtgactaaagtatcaaactgtatccaagtaacttagtaac---actccagaataaactcaagggtatttataggattacagatataccc
s panTro5.chr6                     29532436 676 + 175400573 ----gagggagggaggtgactggattgtgggggcggtttctcctattctggtctcgtgacagtgagttagttttcatgagatctgatggttttacaagcctctggcatttcccctgcttgcacttctctctcctgccaccatgtga------------agaaggtcagtgcttcctctttaccttccaccatgattgtaagtttcttgaggcctccccagccatgtggaactgtgagtcaattaaacctcttttctttacaaattacccagtcttaggtatttccttatagcagtatgaaaatggactaatacacagagagagggccctgcttgagtttagctgagcgctgatttgcatatgtgtgtgaggaagctatccaagaatgagtaaagaaccacttaatggattaaggtaaatagtgcccaatgcttatgcaaaggctgggaattttgtgggttctcaagctatttatgtgccagaatgaaaacctaagaattcctgaggcattgagtttagcaatcaaaagtgtcttgcttcaagaatttcaataattagctctaaactaaacactgttctggttttacctaacaaatcttcaaaacaagtgactaaagtatcaaactgtatccaagtaacttagtaac---actccagaataaactcaagggtatttataggattacagatataccc
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29770722 676 + 173848474 ----gagggagggaggtgactggattgtgggggcggtttctcctattctggtctcgtgacagtgagttagttttcatgagatctgatggttttacaagcctctggcatttcccctgcttgcacttctctctcctgccaccatgtga------------agaaggtcagtgcttcctctttaccttccaccatgattgtaagtttcttgaggcctccccagccatgtggaactgtgagtcaattaaacctcttttctttacaaattacccagtcttaggtatttccttatagcagtatgaaaatggactaatacacagagagagggccctgcttgagtttagctgagcgctgatttgcatatgtgtgtgaggaagctatccaagaatgaggaaagaaccacttaatggattaaggtaaatagtgcccaatgcttatgcaaaggctgggaattttgtgggttctcaagctatttatgtgccagaatgaaaacctaagaattcctgaggcattgagtttagcaatcaaaagtgtcttgcttcaagaatttcaataattagctctaaactaaacactgttctggttttacctaacaaatcttcaaaacaagtgactaaagtatcaaactgtatccaagtaacttagtaac---actccagaataaactcaagggtatttataggattacagatataccc
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5573539 676 +   6154872 ----gagggagggaggtgactggatcgtgggggcggtttattctattctggtctcgtgacagtgagttagttttcatgagatctgatggttttacaagcctctggcatttcccctgcttgcacttctctctcctgccaccatgtga------------agaaggtcagtgcttcctcttcaccttccaccatgattgtaagtttcttgaggcctccccagccatgtggaactgtgagtcaattaaacctcttttctttacaaattacccagtcttgggtatttccttatagcagtatgaaaatggactaatacacagagagagggccctgcttgagtttagctgagcgctgatctgcatatgtgtgtgagaaagctatccaagaatgaggaaagaaccacttaatggattaaggtaaatagtgcccaatgcttatgcaaaggctgggaattttgtgggttctcaagctatttatgtgccagaatgaaaacctaagaattcctgaggcattgagtttagcaatcaaaagtgtcttgcttcaagaatttcaataattagctctaaactaaacactgttctggttttacctaacaaatcttcaaaacaagtgactaaagtatcaaactgtatccaagtaacttagtaac---actccagaagaaactcaagggtatttataggattacagatataccc
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      7129 675 +     39990 ----gagggagggaggtgactggatcatgggggcggtttctcgtattctggtctcgtgacagtgagtgagttttcatgagatctgatggttttacaagcttctggcatttcccctgcttgcacttctctc-cctgccaccatgtga------------agaaggtcagtgcttcctcttcaccttccaccatgattgtaagtttcttgaggcctccccagccatgtggaactgtgagtcaattaaacctcttttcttcacaaattaccgagtcctgggtatttccttatagcagtatgaaaatggactaatacacagagagagggccctgcttgagtttagctgagcgctgatctgcatatgtgtgtgaggaagctatccaagaatgaggaaagaactacttaatggattaaggtaaatagtgcctaatgcttatgcaaaggctgggaattttgtgggttctcaagctatttatgtgccggaatgaaaacctaagaattcctgaggcattgagtttagcaatcaaaagtgtcttgcttcaagaatttcaataattagctctaaactaaacactgttctggttttacctgacaaatcttcaaaacaagtgattaaagtatcaaaccgtatccaagtaaattagtagc---actccagaataaactcaagggtatttataggattacaaatataccc
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29801928 679 + 172585720 ----gagggagggaggtgattggatcatgggggcggtttctcctattctggtctcgtgacagtgagtgagttttcatgagatctgatggttttataagcgtctggcattttccctgcttgcacttctctttcctgccaccacgtga------------agaaggttattgcttcctcttgaccttccaccatgattgtaagtttcttgaggcctccccagccatgtggaactgtgagtcagttaaacctctttcctttataaattacccagtcttgggtatttccttatagcagtatgaaaaaggactaatacacagagagagggccctgcttgagtttagctgagcgctgatctgcatatgtgtgtgaggaagctatccaagaatgaggaaagaactacttaatggattaaggtaaatagtgcccaatgcttatgcaaaggctaggaattttgtgggttctcaagctatttatgtgccagaatgaaaacctaagaattcctgaggcattgagtttagcaatcaaaagtgtcttgcttcaagagtttcaataattagctctaaactaaacactgttctggttgcacctaacaaatcttcgaaagaagtaactaaagtttcaaactgtatccaagtaatttagtagcactactccagaagaaattcaaggatatttctaggattacaaatataccc
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29464230 679 - 170955103 ----gagggagggaggtgattggatcatgggggcggtttctcctattctggtctcgtgacagtgagtgagttttcatgagatctgatggttttataagcgtctggcattttccctgcttgcacttctctttcctgccaccacgtga------------agaaggtcattgcttcctcttgaccttccaccatgattgtaagtttcttgaggcctccccagccatgtggaactgtgagtcagttaaacctctttcctttataaattacccagtcttgggtatttccttatagcagtatgaaaaaggactaatacacagagagagggccctgcttgagtttagctgagcgctgatctgcatatgtgtgtgaggaagctatccaagaatgaggaaagaactacttaatggattaaggtaaatagtgcccaatgcttatgcaaaggctgggaattttgtgggttctcaagctatttatgtgccagaatgaaaacctaagaattcctgaggcattgagtttagcaatcaaaagtgtcttgcttcaagagtttcaataattagctctaaactaaacactgttctggttgcacctaacaaatcttcgaaagaagtaactaaagtttcaaactgtatccaagtaatttagtagcactactccagaagaaattcaaggatatttctaggattacaaatataccc
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2450762 679 -   2996164 ----gagggagggaggtgattggatcatgggggcggtttctcctattctggtctcgtgacagtgagtgagttttcatgagatctgatggttttataagcgtctggcattttccctgcttgcacttctctttcctgccaccacgtga------------agaaggtcattgcttcctcttgaccttccaccatgattgtaagtttcttgaggcctccccagccatgtggaactgtgagtcagttaaacctctttcctttataaattacccagtcttgggtatttccttatagcagtatgaaaaaggactaatacacagagagagggccctgcttgagtttagctgagcgctgatctgcatatgtgtgtgaggaagctatccaagaatgaggaaagaactacttaatggattaaggtaaatagtgaccaatgcttatgcaaaggctgggaattttgtgggttctcaagctatttatgtgccagaatgaaaacctaagaattcctgaggcattgagtttagcaatcaaaagtgtcttgcttcaagagtttcaataattagctctaaactaaacactgttctggttgcacctaacaaatcttcgaaagaagtaactaaagtttcaaactgtatccaagtaatttagtagcactactccagaagaaattcaaggatatttctaggattacaaatataccc
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             215250 679 +    766320 ----gagggagggaggtgattggatcatgggggcggtttctcctgttctggtctcgtgacagtgagtgagttttcatgagatctgatggttttataagcgtctggcattttccctgcttgcacttctctttcctgccatcacgtga------------agaaggtcattgcttcctcttgaccttccaccatgattgtaagtttcttgaggcctccccagccatgtggaactgtgagtcagttaaacctctttcctttataaattacccagtcttgggtattgccttatagcagtatgaaaatggactaatacacagagagagggccctgcttgagtttagctgagcgctgatctgcatatgtgtgtgaggaagctatccaagaatgaggaaataactacttaatggattaaggtaaatagtgcccaatgcttatgcaaaggctgggaattttgtgggttctcaagctatttatgtgccagaatgaaaacctaagaattcctgaggcattgagtttagcaatcaaaagtgtcttgcttcaagagtttcaataattagctctaaactaaacactgttctggttgcacctaacaaatcttcgaaacaagtaactaaagtttcaaactgtatccaagtaatttagtagcactactccagaagaaattcaaggatatttctaggattacaaatataccc
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28727474 676 -  71996105 ----gagggagggaggtgattggatcatgggggcggtttctcctattctggtctcgtgacagtgagtgagttttcatgagatctgatggttttataagcgtctggcatttcccctgcttgcacttctctttcctgccaccacgtga------------agaaggtcattgcttcctcttgaccttccaccatgattgtaagtttcttgaggcccccctagccatgcggaactgtgagtcagttaaacctctttcctttatagatgacccagtcttgggtatttccttatagcagtatgaaaatggactaatacacagagagagggccctgcttgagtttagctgagcgctgatctgcatatgtgtgtgaggaagctatccaagaatgaggaaagaactacttaatgaattaaggtaaatagcgcccaatgcttatgcaaaggctgggaattttgtgggttctcaagctatttatgtgccagaatgaaaacctaagaattcctgaggcactgagtttagcaatcaaaagtgtcttgcttcaagagtttcaataattagctctaaactaaacactgttctggttgcacctaacaaatctttgaaacaagtgactaaagtttcaaactgcatccaactaatttagtagc---actccagaagaaattcaaggatatttctaggattacaaatataccc
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             188505 679 -    352859 ----gagggagggaggtgattggatcatgggggcggtttctcctattctggtctcgtgacagtgagtgagttttcatgagatctgatggttttataagcgtctggcattttccctgcttgcacttctctttcctgccaccacgtga------------agaaggtcattgcttcctcttgaccttccaccatgattgtaagtttcttgaggcctccccagccatgtggaactgtgagtcagttaaacctctttcctttataaattacccagtcttgggtatttccttatagcagtatgaaaatggactaatacacagagagagggccctgcttgagtttagctgagcgctgatctgcatatgtgtgtgaggaagctatccaagaatgaggaaagaactacttaatggattaaggtaaatagtgcccaatgcttatgcaaaggctgggaattttgtgggttctcaagctatttatgtgccagaatgaaaacctaagaattcctgaggcattgagtttagcaatcaaaagtgtcttgcttcaagagtttcaataattagctctaaactaaacactgttctggttgcacctaacaaatcttcgaaacaagtaactaaagtttcaaactgtatccaagtaatttagtagcactactccagaagaaattcaaggatatttctaggattacaaatataccc
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2357044 687 -   3067355 ----gagggagggaggtgattggatcatgggggcggtttctcctattctggtctggtgacagtgagtgagttttcatgagatctgatggttttataagcgtctggcatttcccctgcttgcacttctctttcctgccaccatgtgaagaaggtcattgagaaggtcattgcttcctcttgacctttcaccatgattgtaagtttcttgaggcctccccagccatgtggaactgtgagtcagttaaaccgctttcc-ttataaattacccagtcttgggtatttccttatagcagtttgaaaatggactaatacacagagagagggccctgcttgagtttagctgagcgctgatctgcatatgtgtgtgaggaagctatccaagaatgaggaaagaactacttaatggattaaggtaaatagcgcccaatgcttatgcaaaggctgggaattctgtgggttctcaagctatttatgtgccagaatgaaaacctaagaattcctgaggcattgagtttagcaaacgaaagtgtcttgcttcaagagtttcaacaattagctctaaactaaacactgttctggttgtacctaacaaatcttcgaaacaagtgactacagtttcaaaccgtatccaagtaatttagtagc---actccagaagaaattcaaggatatttctaggattacaaatacaccc
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126575634 665 - 158406734 gaaggagggaaggaggtgattggatcactggggtggtttctgccattctgttctcccgatagtgagtgagttctcatgagatctgatggttttataagcatttggcgtttcccctgctttcacttctctctcccgccaccatgtga------------agaaggtcattgctttctcttcaccttccaccatgattgtgagtttcttgaggcctctccagccctgtggaactgtgagtcaattaaacctctttcctttacaaattacccagtcttaggtatttgattacagcagtgcgaaaacggactaataAACCGAGagagcgccctgcttgagttcagctgagtgctgatctgcatatgtaagcgaggaagctatccaagaa-gaggaaagaacaacttaatgggttagggtaaatagtgcccaatgcttatgcaaaggctgggaattttgtggattctcacactatttctgtgccagaatgaaaacctaaggattcctggggcattgagttcagccatcaaaagcgtcttgcttcaagagtctgaataattagctctaaactaa-------------tttacctaacaaatcttcaaaacaagtgactaaagcatcaaactgtattcaagtaacttagtagc---cctccagaagaaactcaaggatattgat-ggaatacaaatatatcc
i calJac3.chr6                    I 99 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1954371 656 -   2232465 I
e cebCap1.NW_016107522v1             195414 7908 +   3820305 I

a score=2332394.000000
s hg38.chr6_GL000254v2_alt           560656 327 +   4827813 agtaaaagaaaattttccaatgaaaatttactaagcatgaaaaaaagcaggaaaatatga-----tgtaaggagaaaaatcaataaatcaaacctgactcagaactgacacatatgttagaatgattcaagttatggcattaaaacaattatactgtttaccatatgttcaaaaat----ttagagacgaggaagatactttaaa-------aaatcaaacttctagagatgaaaaccacaacgttt--aaatatacataatacctaaaagcactgaatgtaattcataatacactaaacaTtgagaagtcccatgatctgcagttggcatgctggagttcctgg
s panTro5.chr6                     29533112 327 + 175400573 agtaaaagaaaattttccaatgaaaatttactaagcatgaaaaaaagcaggaaaatatga-----tgtaaggagaaaaatcaataaatcaaacctgactcagaactgacacatatgttagaatgattcaagttatggcattaaaacaattatactgtttaccatatgttcaaaaat----ttagagacgaggaagatactttaaa-------aaatcaaacttctagagatgaaaaccacaacgttt--aaatatacataatacctaaaagcactgaatgtaattcatagtacactaaacaTtgagaagtcccatgatctgcagttggcatgctggagttcctgg
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29771398 327 + 173848474 agtaaaagaaaattttccaatgaaaatttactaagcatgaaaaaaagcaggaaaatatga-----tgtaaggagaaaaatcaataaatcaaacctgactcagaactgacacatatgttagaatgattcaagttatggcattaaaacaattatactgtttaccatatgttcaaaaat----ttagagacgaggaagatacttttaa-------aaatcaaacttctagagatgaaaaccacaacgttt--aaatatacataatacctaaaagcactgaatgtaattcatagtacactaaacaTtgagaagtcccatgatctgcagttggcatgctggagttcctgg
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5574215 327 +   6154872 agtaaaagaaaattttccaatgaaaatttactaagcatgaaaaaaagcaggaaaatatga-----tgtaaggagaaaaatcaataaatcaaacctgactcagaactgacacatatgttagaatgattcaagttatggcattaaaacaattatactgtttaccatatgttcaaaaat----ttagagatgaggaagatactttaaa-------aaatcaaacttctagagatgaaagccacaacgttt--aaatatacataatacctaaaagcactggatgtaattcatagtacactaaacaTtgagaagtcccatgatctgcagttggcatgctggagttcctgg
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      7804 324 +     39990 agtaaaagaaaattttccaatgaaaatttactaagcatcaaaaaaagcaggaaaatatga-----tgtaaggagaaaaatcaataaatcaaacctgactcagaactgacacatatgttagaatgattcaagttatggcattaaaacaatt---ctgtttaccatatgttcaaaaat----ttagagacgaggaagatactttaaa-------aaatcaaacttctagagatgaaaaccacaacgttt--aaatatacataatgcctaaaagcactggatgtaattcatagtacattaaaaaTTGAGAAGTCCCATGATCTGCAGTTGGCATGCTGGAGTTCCTGG
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29802607 326 + 172585720 ggtaaaagaaaattttccaatgaaaatttactgagcatgaaaaaaagcaggaaaatatga-----tgtaagggaaaaaatcaacaaatcaaacctgactcagaactgacacatatgttagaatgattcaagttatggcattaaaacaattatactgtttaccatatgttcagaaat----ttatagatgtggaagatactttaaa-------aaatccaacttctagagacgaaaaccacaacgttt--aaatatacgtagtacctaaaagcactggatgtaatccatagtgcattcaacattgGGAAGCTCCGTGA-CTGCAGTTGGCATGCTGGAGTTCCTGG
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29464909 326 - 170955103 ggtaaaagaaaattttccaatgaaaatttactaagcatgaaaaaaagcaggaaaatatga-----tgtaagggaaaaaatcaacaaatcaaacctgactcagaactgacacatatgttagaatgattcaagttatggcattaaaacaattatactgtttaccatatgttcagaaat----ttatagatgtggaagatactttaaa-------aaatccaacttctagagacgaaaaccacaacgttt--aaatatacatagtacctaaaagcactggatgtaatccatagtgcattcaacattgGGAAGCTCCGTGA-CTGCAGTTGGCATGCTGGAGTTCCTGG
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2451441 326 -   2996164 ggtaaaagaaaattttccaatgaaaatttactgagcatgaaaaaaagcaggaaaatatga-----tgtaagggaaaaaatcaacaaatcaaacctgactcagaactgacacatatgttagaatgattcaagttatggcattaaaacaattatactgtttaccatatgttcagaaat----ttatagatgtggaagatactttaaa-------aaatccaacttctagagacgaaaaccacaacgttt--aaatatacgtagtacctaaaagcactggatgtaatccatagtgcattcaacattgGGAAGCTCCGTGA-CTGCAGTTGGCATGCTGGAGTTCCTGG
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             215929 326 +    766320 agtaaaagaaaattttccaatgaaaatttactaagcatgaaaaaaagcaggaaaatatga-----tgtaaggaaaaaaatcaacaaatcaaacctgactcagaactgacacatatgttagaatgattcaagttatggcattgaaacaattatactgtttaccatatgttcagaaat----ttatagatgtggaagatactttaaa-------aaatccaacttctagagacgaaaaccacaacgttt--aaatatacgtagtacctaaaagcactggatgtaatccatagtgcattcagcattgGGAAGCTCCGTGA-CTGCAGTTGGCATGCTGGAGTTCCTGG
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28728150 329 -  71996105 agtaaaagaaaattttccaatgaaaatttactaagcatgaaaaaaagcaggaaaatatga-----tgtaaggaaaaaaatcaacaaatcaaacctgactcagaactgacacatatgttagaatgattcaagttatggcattaaaacaattatactgtttaccatatgttcagaaat----ttataggtgtggaagatactttaaa-------aaatccaacttctacagatgaaaaccacaacgtttaaaaatatacatagtacctaaaagcactggatgtaattcatagtgcattcaaccttgagaagctccgtgatctgcaGTTGGCATGCTGGGGTTCCTGG
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             189184 326 -    352859 agtaaaagaaaattttccaatgaaaatttactaagcatgaaaaaaagcaggaaaatatga-----tgtaaggaaaaaaatcaacaaatcaaacctgactcagaactgacacatatgttagaatgattcaagttatggcattgaaacaattatactgtttaccatatgttcagaaat----ttatagatgtggaagatactttaaa-------aaatccaacttctagagacgaaaaccacaacgttt--aaatatacgtagtacctaaaagcactggatgtaatccatagtgcattcagcattgGGAAGCTCCGTGA-CTGCAGTTGGCATGCTGGAGTTCCTGG
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2357731 324 -   3067355 agtaaaagaaaattttccaatgaaaatttactaagcatgaaaaaaagcaggaaaatatga-----tgtaaggaaaaaaatcaacaaatcaaacctgactcagaactgacacatatgttagaatgattcaagttatggcattaaaacaattatactgtttaccatatgttcagaaat----ttatagatgtggaagatactttaaa-------aaatccaacttctagagatgaaaacc---acgttt--aaatatacatagtacctaaaagcactggatgtaatccatagtgcattcaacattgagaagCTCCATGATGTGCAGCTGGCATGCTGGAGTTCCTGG
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126576299 327 - 158406734 agtaaaagaaaattttccaatgaaaatttactaagcatgaaaaaaagaatgaaaatatga-----tgtaaggagaaaaatcagtaagttaaaactgactcagaattgacacatatgttagaattattcaagttatggcattaaaacgattacactgtttaccatatgttcaaaagt----ttacagatgtggaagatactttaaa-------aaatcaaacatctagagatgaaaaccacaacattt--aagtatacataatacctaaaaggactggatgtaattcatagtacattaaacaTtgagaagtcccatgatctgcagctggtatgctagagacccagg
i calJac3.chr6                    C 0 I 1833
s otoGar3.GL873742                  1955027 335 -   2232465 aagaaaagaaaag-----aaaagaaaagaaccaggcatgcaaaagagtggaaaaatatgacatagtgtaagaagaaaagtcaatctatcataacttattcagaattgatacacatgttggaattattcaggtgatggtattaaaacaattatatggtgtgccatgtgttcaaaaagttaattagatacatggaaagt--tataaaatcaaccaaatcaaacttctatagatgaaaactgccatgctt--gaatatacacaatacttgaatacactagctgggattcacagtagattaaacatt-aCaagtcacatgatctgcagctagcacgctgcaggcccagg
i otoGar3.GL873742                I 656 I 6016
e canFam3.chr35                    26204327 64688 +  26524999 T
e cebCap1.NW_016107522v1             195414 7908 +   3820305 I

a score=914434.000000
s hg38.chr6_GL000254v2_alt           560983 186 +   4827813 GCCTTGGGAGGAGGCTCTGTGCAGGCCTCCCAGGGCCAGTCCCCTGGGGTCTGCTCTATACAGGTCACCCGAGGCGTTAGGGTGACCTCGGAGCCTGCCACTCCCGACAGCCAGACCCAGGGCCTGCGTTCTGCTCTACCCAGggcctccctgaaagcccctgcccgactaggcacagctgcagcc
s panTro5.chr6                     29533439 186 + 175400573 GCCTTGGGAGGAGGCTCTGTGCAGGCCTCCCAGGGCCAGTCCCCTGGGGTCTGCTCTATACAGGTCACCCGAGGCGTTAGGGTGACCTCGGAGCCTGCCACTCCCGACAGCCAGACCCAGGGCCTGCGTTCTGCTCTATCCAGggcctccctgaaagcccctgcccgactaggcacagctgcagcc
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29771725 186 + 173848474 GCCTTGGGAGGAGGCTCTGTGCAGGCCTCCCAGGGCCAGTCCCCTGGGGTCTGCTCTATACAGGTCACCCGAGGCGTTAGGGTGACCTCGGAGCCTGCCTCTCCCGACAGCCAGACCCAGGGCCTGCGTTCTGCTCTATCCAGggcctccctgaaagcccctgcccgactaggcacagctgcagcc
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5574542 186 +   6154872 GCCTTGGGAGGAGGCTCTGCGCAGGCCTCCCAGGGCCAGTCCCCTGGGGTCTGCTCTACACAGGTCACCCGAGGCGTTAGGGTGACCTCGGAGCCTGCCACTCCCGACAGCCAGACCCAGGGCCTGCGTTCTGCTCTATCCAGggcctccctgaaagcccctgcccgactaggcacagctgcagcc
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      8128 170 +     39990 GCCTCGGGAGGAGGCTCTGCCCTGGCCTCCCAGGGCCAGTCCCCTGGGGTCTGCC----------------AGGCGTTAGGGTGACCTCGGAGCCTGCCACTCCCGACAGCCAGACCCAGGGCCTGCGCTCTGCTCTATCCAGGGCCTCCATGAAAGCCCCTGCCCAActaggcacagctgcagcc
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29802933 163 + 172585720 GCCTCGGGAGGAGGCTCTGCGCAGGCCTCCCAGGGCCAGTCCCCTGGGGTCCGCC----------------AGGCGTTTGGGTTACCTCGGAGCCTGCCACTCCCTACAG------CCAGGGCCTGCGTTCTACTCTATCCAGGGCGCCCCTGAAagcccctacct-actaggcacagctgcagcc
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29465235 163 - 170955103 GCCTCGGGAGGAGGCTCTGCGCAGGCCTCCCAGGGCCAGTCCCCTGGGGTCTGCC----------------AGGCGTTTGGGTTACCTCGGAGCCTGCCACTCCCTACAG------CCAGGGCCTGCGTTCTACTCTATCCAGGGCGCCCCTGAAagcccctacct-actaggcacagctgcagcc
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2451767 163 -   2996164 GCCTCGGGAGGAGGCTCTGCGCAGGCCTCCCAGGGCCAGTCCCCTGGGGTCCGCC----------------AGGCGTTTGGGTTACCTCGGAGCCTGCCACTCCCTACAG------CCAGGGCCTGCGTTCTACTCTATCCAGGGCGCCCCTGAAagcccctacct-actaggcacagctgcagcc
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             216255 163 +    766320 GCCTCGGGAGGAGGCTCTGCGCAGGCCTCCCAGGGCCAGTCCCCTGGGGTCCGCC----------------AGGCGTTTGGGTGACCTCGGAGCCTGCCACTCCCTACAG------CCAGGGCCTGCGTTCTACTCTATCCAGGGCGCCCCTGAAAGCCCCTACCT-Actaggcacagctgcagcc
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28728479 164 -  71996105 GCCTCAGGAGGAGGCTCTGCGCAGGCCTCCCAGGGCCAGTCCCTTGGGGTCCGCC----------------AGGCGTTTGGGTGACCTCGGAGCCTGCCACTCCCTACAG------CCAGGGCCTGAGTTCTACTCTATCCAGGGCGCCCCTGAAAGCCCCTGCCCGACTAGGCACAGCTGCAGCC
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             189510 163 -    352859 GCCTCGGGAGGAGGCTCTGCGCAGGCCTCCCAGGGCCAGTCCCCTGGGGTCCGCC----------------AGGCGTTTCGGTGACCTCGGAGCCTGCCACTCCCTACAG------CCAGGGCCTGCGTTCTATTCTATCCAGGGCGCCCCTGAAAGCCCCTACCT-ACTAGGCACAGCTGCAGCC
i manLeu1.NW_012099655v1          C 0 I 9457
s colAng1.NW_012115566v1            2358055 164 -   3067355 GCCTCGGGAGGAGGCTCTGCGCAGGCCTCCCAGGGCCAGTCCCCTGGGGTCCGCC----------------AGGCGTTTGGGTGACCTCGGAGCCTGCCACTCCCTACAG------CCAGGGCCTGCGTTCTACTCTATCCAGGGCGCCCCTGAAAGCCCCTGCCCGActaggcacagctgcagcc
i colAng1.NW_012115566v1          C 0 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1955362 6016 -   2232465 I
e cebCap1.NW_016107522v1             195414 7908 +   3820305 I
e calJac3.chr6                    126576626 1833 - 158406734 I

a score=4867059.000000
s hg38.chr6_GL000254v2_alt           561169 1003 +   4827813 gccaaagtcggtgcagtatacccggggctcctgtgtgctgggagcaggcaggagctctgcccaccctgggcgcggctgcagccacccacgtcagggttgtagacttgggcctccatgtgctcttga------gggctgggagcaggcaggagccccacacccccaggcacagctgcagctgtccaaatggagacagtagatgtgggcctccgtgtgctcttgagagccagggaaggccccctttgccattgcaggctcagaggtgcctgctcctactgcctggtctcttcccactctctgcaactgatccaatctaggagtaggtggagctgagcccaggcactgtcacaaccctgccaggtatatgcatgatcgagccctgccacctcagccccctctggatgttgggccagacaagagtggatgcgggcaaagcgttggcctgcaggtgccccttggc---------------accatgaaaggcgtcaggaggcagacgggctcctaggtggaagggagtgggtccctgtaaggccccatcctcaggccaggaagagcctgaaggctgggggtcaggctgccacaccggtggactggagtggggtcttgtggtgcctttttctgcccacccatggccacggatggaccactccatatgcacttcctcccctctgaggtccataaaagccccaggatcagcaatagcatggtagaggacaactgagagatgacgagatgaccagctgcagagagtagctatcctctctgctgagagctgggaagtcaatggggacctgcctgcagagaggagccacctctccaaacacacccagaatgatgttcgaccaaatataggcctgtctcattttattgtgcttcactttattgcacctgaaggtttgtggcaaccttgcaatgagcaaatctatcagtatcatttttccaacggcatgtgctcccttcatatctctatgtgacgttttggtaattctcacaatatttcaaactttttcgttattat
s panTro5.chr6                     29533625 1003 + 175400573 gccaaagtcggtgcagtatacccggggctcctgtgtgctgggagcaggcaggagctctgcccaccctgggcgcggctgcagccacccacgtcagggttgtagacttgggcctccatgtgctcttga------gggctgggagcaggcaggagccccacacccccaggcacagctgcagctgtccaaatcgagacagtagatgtgggcctctgtgtgctcttgagagccggggaaggccccctttgccattgcaggctcggaggtgcctgctcctactgcctggtctctccccactctctgcaactgatccaatctaggagtaggtggagctgagcccaggcactgtcacaaccctgccaggtatatgcatgatcgagccctgccacctcagccccctctggatgttgggccagacaagagtggatgcgggggaagcgttggcctgcaggtgccccttggc---------------accatgaaaggcgtcaggaggcagacgggctcctaggtggaagggagcgggtccctgtaaggccccatcctcaggccaggaagagcctgaaggctgggggtcaggctgccacaccggtggactggagtggagtcttgtggtgcctttttctgcccacccatggccacggatggaccactccatgtgcacttcctcccctctgaggtccataaaagccccaggatcagcgatagcatggtagaggacaactgagagatgacgggatgaccagctgcagagagtagctatcctctctgctgagagctgggaagtcaatggggacctgcctgcagagaggagccacctctcCAAACACACCCAGAATGATGTTCGACTAAATATaggcctgtctcattttattgtgcttcactttattgcacctgaaggtttgtggcaaccttgcaatgagcaaatctatcagtatcatttttccaacggcatgtgctcccttcatatctctatgtgacgttttggtaattctcacaatatttcaaactttttcgttattat
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29771911 1003 + 173848474 gccaaagtcggtgcagtatacccggggctcctgtgtgctgggagcaggcaggagctctgcccaccctgggcgcggctgcagccacccacgtcagggttgtagacttgggcctccatgtgctcttga------gggctgggagcaggcaggagccccacacccccaggcacagctgcagctgtccaaatcgagacagtagatgtgggcctctgtgtgctcttgagagccggggaaggccccctttgccattgcaggctcggaggtgcctgctcctactgcctggtctctccccactctctgcaactgatccaatctaggagtaggtggagctgagcccaggcactgtcacaaccctgccaggtatatgcatgatcgagccctgccacctcagccccctctggatgttgggccagacaagagtggatgcgggggaagcgttggcctgcaggtgccccttggc---------------accatgaaaggcgtcaggaggcagacgggctcctaggtggaagggagcgggtccctgtaaggccccatcctcaggccaggaagagcctgaaggctgggggtcaggctgccacaccggtggactggagtggggtcttgtggtgcctttttctgcccacccatggccacggatggaccactccatatgcacttcctcccctctgaggtccataaaagccccaggatcagcgatagcatggtagaggacaactgagagatgacgggatgaccagctgcagagagtagctatcctctctgctgagagctgggaaatcaatggggacctgcctgcagagaggagccacctctcCAAACACACCCAGAATGATGTTCGACTAAATATaggcctgtctcattttattgtgcttcactttattgcacctgaaggtttgtggcaaccttgcaatgagcaaatctatcagtatcatttttctaacggcatgtgctcccttcatatctctatgtgacgttttggtaattctcacaatatttcaaactttttcgttattat
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5574728  991 +   6154872 gccaaagtcggtgcagtatacccggggctcctgtgtgctggaagcaggcaggagctctgcccaccctgggtgcggctgcagccacccacgtcagggttgtagacttgggcctccatgtgctcttga------gggctgggagcaggcaggagccccacacccccaggcacagctgcagctgtccaaatcgagacagtagatgtgggcctctgtgtgctcttgagagccggggaaggccccctttgccattgcaggctcggaggtgcctgctcctactgcctggtctctccccactctttgcaactgatccaatctaggagtaggtggagctgagcccaggcactgtcacaactctgccaggtatatgcatgatcgagccctgccacctcagccccctctggatgttgggccagacaagagtggatgcgggggaagcgttggcctgcaggtgccccttggc---------------accatggaaggcgtcaggacgcagacgggctcctaggtggaagggagtgggtccctgtaaggccccatcctcaggccaggaaaagcctgaaggctgggggtcaggctgccacaccagtg------------gtcttgtggtgcctttttctgcccacccatggccacggatggaccactccatatgcacttcctcccctctgaggtccataaaagccccaggatcagcaatagcatggtagaggacaactgaaagatgacgggatgaccagctgcagagagtagctatcctctctgctgagagctgggaagtcaatggggacctgcctgcagagaggagccacctctgcaaacacacccagaatgatgttcgaccaaatataggcctgtctcattttattgtgcttcactttattgcacctgaaggtttgtggcaaccttgcaatgagcaaatctatcagtatcatttttccaacggcatgtgctcccttcatatctctatgtgacgttttggtaattctcacaatatttcaaactttttcgttattat
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      8298 1000 +     39990 gccaaagtcggtgcagtatacccggggctcctgtgtgctgggagcaggcaggagccttgcccaccctgggcgcggctgcagccacccacgtcagggtcatagacttgggcctccatgtgctcttga------gggctgggagcaggcaggagccccacacccccaggcacagctgcagctgtccaaattgagacagtagacgtgggcctctgtgtgctcttgagagcctgggaaggccccctttgccattgcaggctgggaggtgcctgctcctactgactggtctctccccactctctgcacctgattcaatcttggagtaggtggagctgagcccaggcactgtc---accctgccaggtatatgcatgatcgagccctgccacctcagccccctctggatgttgggccagacaagagtggatgcaggggaagcattggcctgcaggtgccccttggc---------------accatggaaggcgtcaggatgcagacgggctcctaggtggaaaggagcgggtccctgtaaggccccatcctcaggccaggaagagcctgaaggctgggggtcaggctgccacactggtggactggagtggggtcttgtggtgcctttttctgcccacccatggccacagatggaccaatccacatgcacttcctcccctctaaggtccataaaagccccaggatcagcaatagcgtggtagaggacaactgagagatgacgggatgaccagctgcagagagtagctatcctctctgctgagagctgggaagtcaatggggacctgcctgcagagaggagccacctctgcAAACACACCCAGAATGATGTTCTACCAAATATaggcctatctcattttattatgcttcactttattgcatctgaaggtttgtggcaaccttgcaaagagcaaatccatcagtaccatttttccaacggcgtgtgctcccttcatatctctatgtgatgttttggtaattctcacaatatttcaaactttttcattattat
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29803096 1017 + 172585720 gccaaagtcggtgcagcatatccgggtctcctgtgcgctgggggcaggcaggagccctgcccatcctgggcgcggctgcagccaccgacgtcagggttgtagacttgggcctccgtgtgctcttga------gggctgggagcaggcaggagccccacacccccgggcacagttgcagctgtccaaatccggacggtagacctgggcctctgtgtgctcttgagagccc-ggaaggccccctttgctattgcaggctcggaagtgcctgctcctactgcctggtctctctccactctgtgcacctgatccaacctaggagtaggtggagctgagcccaggcaccgtcataaccctgccaggtatacgcatgatcgagccctgccacctcagccccctctggatgttgggccagacaagagtggatgagggggaagcgttggcctgcaggtgccccttggcacaaacagcctgtgcaccatggaaggcgtcaggaggcagacgggctcctcggtggaagggagcgggtccctgtaaggccccatcctcaggccaggaagaatctgaaggctgggggtcaggctgccacaccggtggactggagtggggtcttgtggtgcctttttctgcccacccatggccacggatggaccaatccacatgcacttcctcccctctgaggtcaatgaaagtcccaggatcagcaatagcatggtagaggacaactgagagatgatgggatgaccagctgcagagagtagttatcctctctgctgagagttgggaagtcattggggacctgcctgcagagaggagccacctctgcaaacacacccagaatgatgttcgaccaaatacaggcctacctcattttattatgcttcactttattgcacctgaaggtttgtgacaaccttgcaatgagcaaatctatcaataccatttttccaatgccatgtgcccccttcatatctctatgtgacattttggtaattctcgcaatatttcaaactttttcattattat
i rheMac8.chr4                    C 0 I 13
s macFas5.chr4                     29465398 1016 - 170955103 gccaaagtcggtgcagcatatccgggtctcctgtgcgctgggggcaggcaggagccctgcccatcctgggcgcggctgcagccaccgacgtcagggttgtagacttgggcctccgtgtgctcttga------gggctgggagcaggcaggagccccacacccccgggcacagttgcagctgtccaaatccggacggtagacctgggcctctgtgtgctcttgagagccc-ggaaggccccctttgctattgcaggctcggaagtgcctgctcctactgcctggtctctctccactctctgcacctgatccaacctaggagtaggtggagctgagcccaggcaccgtcataaccctgccaggtatacgcatgatcgagccctgccacctcagccccctctggatgttgggccagacaagagtggatgagggggaagcgttggcctgcaggtgccccttggcacaagcagcctgtgcaccatggaaggcgtcaggaggcagacgggctcctcggtggaagggagcgggtccctgtaaggccccatcctcaggccaggaagagtctgaaggctgggggtcaggctgccacaccggtggactggagtggggtcttgtggtgcctttttctgcccacccatggccacggatggaccaatccacatgcacttcctcccctctgaggtcaatgaaagtcccaggatcagcaatagcatggtagaggacaactgagagatgatgggatgaccagctgcagagagtagctatcctctctgctgagagttgggaagtcaatggggacctgcctgcagagaggagccacctctgcaaacacacccagaatgatgttcgaccaaatacaggcctacctcattttattatgcttcactttattgcacctgaaggtttgtgacaaccttgcaatgagcaaatctatcaataccatttttccaatgccatgtgcccccttcatatctctatgtgacattttggtaattctcacaatatttcaaactttttcattatta-
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2451930 1017 -   2996164 gccaaagtcggtgcagcatatccgggtctcctgtgcgctgggggcaggcaggagccctgcccatcctgggcgcggctgcagccaccgacgtcagggttgtagacttgggcctccgtgtgctcttga------gggctgggagcaggcaggagccccacacccccgggcacagttgcagctgtccaaatccggacggtagacctgggcctctgtgtgctcttgagagccc-ggaaggccccctttgctattgcaggctcggaagtgcctgctcctactgcctggtctctctccactctgtgcacctgatccgacctaggagtaggtggagctgagcccaggcaccgtcataaccctgccaggtatacgcatgatcgagccctgccacctcagccccctctggatgttgggccagacaagagtggatgagggggaagcgttggcctgcaggtgccccttggcacaagcagcctgtgaaccatggaaggcgtcaggaggcagacgggctcctcggtggaagggagcgggtccctgtaaggccccatcctcaggccaggaagagtctgaaggctgggggtcaggctgccacaccggtggactggagtggggtcttgtggtgcctttttctgcccacccatggccacggatggaccaatccacatgcacttcctcccctctgaggtcaatgaaagtcccaggatcagcagtagcatggtagaggacaactgagagatgacgggatgaccagctgcagagagtagctatcctctctgctgagagttgggaagtcaacggggacctgcctgcagagaggagccacctctgcaaacacacccagaatgatgttcgaccaaatacaggcctacctcattttattatgcttcactttattgcacctgaaggtttgtgacaaccttgcaatgagcaaatctatcaataccatttttccaatgccatgtgcccccttcatatctctatgtgacattttggtaattctcgcaatatttcaaactttttcattattat
i macNem1.NW_012011356v1          C 0 I 13
s cerAty1.NW_012002711v1             216418 1017 +    766320 gccaaagtcggtgcagcatatccgggtctcctgtgcgctgggggcaggcaggagccctgcccatcctgggcgcggctgcagctaccgacgtcggggttgtagacttgggcctccgtgtgctcttga------gggctgggagcaggcaggagccccgcacccccaggcacagctgcagctgtccaaatccggacggtagacctgggcctctgtgtgctcttgagagcct-ggaaggccccctttgccattgcaggctcggaagtgcctgctcctactgcctggtctctctccactctctgcacctgatccaacctaggagtaggtggagctgagcccaggcactgtcataaccctgccaggtatacgcatgatcgagccctgccacctcagccacctctggatgttgggccagacaagagtggatgagggggaagcgttggcctgcaggtgccccttggcacaagcagcctgtgcaccatggaaggcgtcaggaggcagacgggctcctcggtggaagggagcgggtccctgtaaggccccatgctcaggccaggaagagtctgaaggctgggggtcaggctgccacaccggtggactggagtggggtcttgtggtgcctttttctgcccacccatggccatggatggaccaatccataagcacttcctcccctctgaggtcaatgaaagtcccaggatcagcaatagcatggtagaggacaactgagagatgacgggatgaccagctgcagagagtagctatcctttctgctgagagttgagaagtcaacggggacctgcctgcagagaggagttacttctgcAAACACACCCAGAATGATGTTCGACCAAATAcaggcctatctcattttattacgcttcactttattgcacctgaaggtttgtggcaaccttgcaatgagcaaatctatcaataccatttttccaatgccatgtgcccccttcgtatctctatgtgacattttggtaattctcacaatatttcaaaccttttcattactat
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28728643 1023 -  71996105 GCCAAAGTCGGTGCAGCATACCCGGGTCTCCTGTGCGCTGGGGGCAGGcaggagccctgcccatcctgggcgcggctgcagccaccgacgtcagggttgtagacttgggtctccttgtgctcttgagggctggggctgggagcaggcaggagccccacacccccaggcacagctgcagctgttcaaatccggacggtagacctgggcctctgtgtgctcttgagagccc-ggaaggccccctttgccattgcaggctcggaagtgcctgctcctactgcctggtctctctccactctctgcacctgatccaacctaggagtaggtggagctgagcccaggcactgccataaccctgccgggcatacgcatgatcgagccctgccacctcagccccctctggatgtggggccagacaagactggatgagggggaagcgttggcctgcaggtgccccttggcacaagcagcctgtgcaccatggaaggcgtcaggaggcagacgggctcctagatggaagggagcgggtccctgtaaggccccatcctcaggccaggaagagtctgaaggctggcggtcaggctgccacaccggtggactggagtggggtcttgtggtgcctttttctgcccacccatggccacggatggaccaatccacatgcacttcctcccctctgaggtcaatgaaagtcccaggatcagcaatagcatggtagaggacaactgagagatgacgggatgaccagctgcagacagtagctatcctctctgctgagagttgggaagtcaatggggacctgcctgcagagaggagccgcctctgcaaacacacccagaatgatgttcgaccaaatacaggcctatctcattttattatgcttcactttattGCACCTGAAGGTTTGTGGCAACCTTGCAATGaccaaatctatcaataccatttttccaatgccatgtgcccccttcatctctctatgtgacattttggtaattctcacaatatttcaaactttttcattattat
i chlSab2.chr17                   C 0 C 0
s colAng1.NW_012115566v1            2358219 1017 -   3067355 gccaaagtcggtgcagcatacccgggtctcctgtgtgctgggagcaggcaggacccctgcccatcatgggtgcggctgcagccaccgacgtcagggttgtagacttgggcctccgtgtgctcttga------gggctgggagcaggcaggagccccacatccccaggcacagctgcagttgtccaattccggacggtagacctgggcctctgtgtgctcttgagagccg-ggaaggccccctttgccattgcaggctcggaagtgcctgctcctactgcctggtctctctccactctctgcacctgatccaacctaggagtaggtggagctgagcccaggcactgtcataaccctgccgggtatacgcatgatcgagccctgccacctcagccccctctggatgttggaccagacaagagtgaatgagggggaagcgttggcctgcaggtgccccttggcacaagcagcctgtgcaccatggaaggcgtcaggaggcagatgggctcctaggtggaagggagcgggtacctgtaaggccccatcctcaggccaggaagagtctgaaggctgggggtcaggctgccacaccagtggactggagtggggtcttgcggtgcctttatctgcccacccatggtcacggatggaccaatccacatgcacttccgcccctctgaggtcaatgaaagtcccaggatcagcaatagcacggtagaggacaactgagagatgacgggatgaccagctgcagagagtagctatcctctctgctgagagttgggaagtcaatggggacctgcctgcagagaggagccacctccgcaaacacacccagaatgatgtttgaccaaatacagtcctatctcattttattatgcttcactttattgcacctgaaggtttgtggcaaccttgcaatgagcaaatctatcaataccatttttccagtgccatgtgcccccttcatatctctatgtgacattttggaaattctcacaatatttcaaactttttcattatgat
i colAng1.NW_012115566v1          C 0 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1955362 6016 -   2232465 I
e cebCap1.NW_016107522v1             195414 7908 +   3820305 I
e calJac3.chr6                    126576626 1833 - 158406734 I
e manLeu1.NW_012099655v1             189673 9457 -    352859 I

a score=20304.000000
s hg38.chr6_GL000254v2_alt           562172 6 +   4827813 tgtatc
s panTro5.chr6                     29534628 6 + 175400573 tgtatc
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29772914 6 + 173848474 tgtatc
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5575719 6 +   6154872 tgtatc
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      9298 6 +     39990 tgtatc
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s macFas5.chr4                     29466414 6 - 170955103 tgtatc
i macFas5.chr4                    C 0 I 1
s cerAty1.NW_012002711v1             217435 6 +    766320 tgtatc
i cerAty1.NW_012002711v1          C 0 I 1
s chlSab2.chr17                    28729666 6 -  71996105 tgtatc
i chlSab2.chr17                   C 0 I 1
s colAng1.NW_012115566v1            2359236 6 -   3067355 tgtatc
i colAng1.NW_012115566v1          C 0 I 13
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1955362 6016 -   2232465 I
e cebCap1.NW_016107522v1             195414 7908 +   3820305 I
e calJac3.chr6                    126576626 1833 - 158406734 I
e manLeu1.NW_012099655v1             189673 9457 -    352859 I
e macNem1.NW_012011356v1            2452947 13 -   2996164 I
e rheMac8.chr4                     29804113 13 + 172585720 I

a score=406410.000000
s hg38.chr6_GL000254v2_alt           562178 478 +   4827813 -gttattgtcaggcctctgagcccaagctaagccatcgcatcccctgtgacctgcatgtatatgcccagatggcctgaagtaactgaagaatcacaaaataagtgaaaatggcctgttcctgccttaactgatgacattccaccacaaaagaagtgaaaatggccggtccttgccttaactgatgacattaccttgtgaaattccttttcctggctcatccattccttttcctggctcatcctggctcaaaaaacctcccccactgagcaccttgtgacccccactcctgcccgctagagaacaacccccctttgac--taattttcctttacctacccaaatcttataatatggccccacccctatctcccttagctgactctcttttcggactcagcccgcctgcacccaggtgattaaaaagctttattgctcacacaaagcctgtttggtgatctcttcacacggacgcgggtgaaa
s panTro5.chr6                     29534634 457 + 175400573 -gttattgtcaggcctctgagaccaagctaagccatcgcatcccctgtgacctgcacgtatatgcccagatggcctgaagtaactgaagaatcacaaaataagtgaaaatggcctgttcctgccttaactgatgacattccaccacaaaagaagtgaaaatggccggtccttgccttaactgatgacattaccttgtgaaattccttttcctggctcatcc---------------------tggctcaaaaaacctcccccactgagcaccttgtgacccccactcctgcccgccagagaacaacccccctttgac--taattttcctttacctacccaaatcttataataaggccccacccctatctcccttagctgactctcttttcggactcagcccgcctgcacccaggtgattaaaaagctttattgctcacacaaagcctgtttggtggtctcttcacacggacgcgagtgaaa
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29772920 457 + 173848474 -gttattgtcaggcctctgagaccaagctaagccatcgcatcccctgtgacctgcacgtatatgcccagatggcctgaagtaactgaagaatcacaaaataagtgaaaatggcctgttcctgccttaactgatgacattccaccacaaaagaagtgaaaatggccggtccttgccttaactgatgacattaccttgtgaaattccttttcctggctcatcc---------------------tggctcaaaaaacctcccccactgagcaccttgtgacccccactcctgcccgccagagaacaacccccctttgac--taattttcctttacctacccaaatcttataataaggccccacccctatctcccttagctgactctcttttcggactcagcccgcctgcacccaggtgattaaaaagctttattgctcacacaaagcctgtttggtggtctcttcacacggacgcgagtgaaa
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5575725 457 +   6154872 -gttattgtcaggcctctgagcccaaggtaagccatcgcatcccctgtgacctgcacgtatatgcccagatggcctgaagtaactgaagaatcacaaaataagtgaaaatggcctgttcctgccttaactgatgacattccaccacaaaagaagtgaaaatggccggtccttgccttaactgatgacattaccttgtgaaattccttttcctggctcatcc---------------------tggctcaaaaaacctcccccactaagcaccttgtgacccccactcctgcccgcgagagaacaacccccctttgac--taattttcctttacctacccaaatcttataatacggccccacccctatctcccttagctgactctcttttcggactcagcccgcctgcacccaggtgattaaaaagctttattgctcacacaaagcctgtttggtggtctcttcacacggacgcgagtgaaa
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      9304 457 +     39990 tgttattgtcaggcctcagagcccaagctaagccattgcatcccctgtgacctgcacgtatatgcccagatggcctgaagtaactgaagaatcacaaaagaagtgaaaatggcctgttcctgccttaactgatgacattccaccataaaagaagtgaaaatggccggtcgttgccttaagtgatgacattaccttatgaaattccttttcctggctcatcc---------------------tggctcaaaag--ctcccccactgagcaccttgtgacccccactcctgcccaccagagaacaacccccctttgactgtaattttcctttacctaccgaaatcttataa-acagccccacccctgtctccctttgctgactcacttttcggactcagcccgcctacacccaggtgattaaaaagctttattgctcacacaaagcctgtttggcggtctcttcacatggacgtgagtgaaa
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1955362 6016 -   2232465 I
e cebCap1.NW_016107522v1             195414 7908 +   3820305 I
e calJac3.chr6                    126576626 1833 - 158406734 I
e colAng1.NW_012115566v1            2359242  13 -   3067355 I
e manLeu1.NW_012099655v1             189673 9457 -    352859 I
e chlSab2.chr17                    28729672   1 -  71996105 I
e cerAty1.NW_012002711v1             217441   1 +    766320 I
e macNem1.NW_012011356v1            2452947  13 -   2996164 I
e macFas5.chr4                     29466420   1 - 170955103 I
e rheMac8.chr4                     29804113  13 + 172585720 I

a score=6876.000000
s hg38.chr6_GL000254v2_alt           562656 2 +   4827813 gt
s panTro5.chr6                     29535091 2 + 175400573 gt
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29773377 2 + 173848474 gt
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5576182 2 +   6154872 gt
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      9761 2 +     39990 gt
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s macFas5.chr4                     29466421 2 - 170955103 gt
i macFas5.chr4                    I 1 C 0
s cerAty1.NW_012002711v1             217442 2 +    766320 gt
i cerAty1.NW_012002711v1          I 1 C 0
s chlSab2.chr17                    28729673 2 -  71996105 gt
i chlSab2.chr17                   I 1 C 0
s manLeu1.NW_012099655v1             199130 2 -    352859 gt
i manLeu1.NW_012099655v1          I 9457 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1955362 6016 -   2232465 I
e cebCap1.NW_016107522v1             195414 7908 +   3820305 I
e calJac3.chr6                    126576626 1833 - 158406734 I
e colAng1.NW_012115566v1            2359242 13 -   3067355 I
e macNem1.NW_012011356v1            2452947 13 -   2996164 I
e rheMac8.chr4                     29804113 13 + 172585720 I

a score=18684.000000
s hg38.chr6_GL000254v2_alt           562658 5 +   4827813 tatgg
s panTro5.chr6                     29535093 5 + 175400573 tatga
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29773379 5 + 173848474 tatga
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5576184 5 +   6154872 tatga
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      9763 5 +     39990 tatga
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s macFas5.chr4                     29466423 5 - 170955103 tacga
i macFas5.chr4                    C 0 C 0
s cerAty1.NW_012002711v1             217444 5 +    766320 tatga
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28729675 5 -  71996105 tatga
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             199132 5 -    352859 tatga
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2359255 5 -   3067355 tatga
i colAng1.NW_012115566v1          I 13 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1955362 6016 -   2232465 I
e cebCap1.NW_016107522v1             195414 7908 +   3820305 I
e calJac3.chr6                    126576626 1833 - 158406734 I
e macNem1.NW_012011356v1            2452947 13 -   2996164 I
e rheMac8.chr4                     29804113 13 + 172585720 I

a score=3240666.000000
s hg38.chr6_GL000254v2_alt           562663 590 +   4827813 tgacgtgtgatcagtgatctttgatgttactattgtaattgttttagggaaccacaaactgcccatgtaagtcagtgaacttaattgataaatgatgtatgttttgattgctccacccactggctgttccaccatctctccctctcttcaggcctctctattttctaagacacaacaatattgaaatgagaccaattaataatcctacaatggcctttaagtattcaagtgaaaggaagagtcacatgtctcttatttaaatcaaaagctagaaatgattaagcttagtgaagaaggcctatcaaaagccaagacaggccagaagctagggcttttgcaccagttagccaagttgtgaatgtaaagaaaagttattgaaaaaaattaaaatgcgctactccagtaaacacataaataagatagcaaaacagtcttattgctgatatggagaaaattttttgtggtctggatagaaaatTttaaaaagctagggaaaaaaagaaaaataaatccatgtcagtagaagccagaaaataataaagaaaatatttaataattgaaagtaataaaatag-------aaa--ataatagataaAT
s panTro5.chr6                     29535098 590 + 175400573 tgatgtgtgatcagtgatctttgatgttactattgtaattgttttagggaaccacaaactgcccatgtaattcagtgaacttaattgataaatgatgtatgttttgattgctccacccactggctgttccaccatctctccctctcttcaggcctctctgttttctaagacacaacaatattgaaatgagaccaattaataatcctacaacggcctttaagtattcaagtgaaaggaagagtcacatgtctcttatttaaatcaaaagctagaaatgattaagcttagtgaagaaggcctatcaaaagccaagacaggccagaagctagggcttttgcaccagttagccaagttgtgaatgtaaagaaaagttattgaaaaaaattaaaatgcgctactccagtaaacacataaataagatagcaaaacagtcttattgctgatatggagaaaattttttgtgatctggatagaaaatTTTAAAAAGCTAGGGAAAAAAAGAAAAATAAATCCATATCAGTAGAAGCCAGGAAATAATAAAGAAAATATTTAATAATAGAAATTAATAAAATAG-------AAA--ATAATAGATAAAT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29773384 590 + 173848474 tgatgtgtgatcagtgatctttgatgttactattgtaattgttttagggaaccacaaactgcccatgtaattcagtgaacttaattgataaatgatgtatgttttgattgctccacccactggctgttccaccatctctccctctcttcaggcctctctattttctaagacacaacaatattgaaatgagaccaattaataatcctacaatggcctttaagtattcaagtgaaaggaagagtcacatgtctcttatttaaatcaaaagctagaaatgattaagcttagtgaagaaggcctatcaaaagccaagacaggccagaagctagggcttttgcaccagttagccaagttgtgaatgtaaagaaaagttattgaaaaaaaataaaatgcgctactccagtaaacacataaataagatagcaaaactgtcttattgctgatatggagaaaattttttgtgatctggatagaaaatTTTAAAAAGCTAGGGAAAAAAAGAAAAATAAATCCATATCAGTAGAAGCCAGGAAATAATAAAGAAAATATTTAATAATAGAAATTAATAAAATAG-------AAA--ATAATAGATAAAT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5576189 596 +   6154872 tgatgtgtgatcagtgatctttgatgttactattgtaattgttttagggaaccacaaactgcccatgtaagtcagtgaacttaattgataaatgatgtatgttttgattgctccacccactggctgttccaccatctctccctctcttcaggcctctctattttctaagacacaacaatattgaaatgagaccaattaataatcctacaatggcgtttaaggattcaagtgaaaggaagagtcacatgtctcttatttaaatcaaaagctagaaatgattaagcttagtgaagaaggcctatcaaaagccaagacaggccagaagctagggcttttgcaccagttagccaagttgtgaatgtaaagaaaagttattgaaaaaaattaaaatgcgctactccagtaaacacataaataagatagcaaaacagtcttattgctgatatggagaaaattttttgtggtctggatagaaaatTTTAAAAAGCTATGGAAAAAAAGAAAAATAAATCCATGTCAGTAGAAGCCAG-aaataataaagaaaatatttaataatagaaattaataaaatagaaaatataaa--ataatagataaAT
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random      9768 588 +     39990 tgatgtgtgatcagtgatctttgatgttactattgtaattgttttagggaaccacaaactgcccatataagtcagtgaacttaattgataaatcatgtatgttttgactgccccacccactggctgttccaccatctctcc--ctcttcaggcctctctattttctaag--acaacaatattgaaatgagaccaattaataatcctacaatggcctttaagtattcaagtgaaaggaagagtcacatgtcttttatttaaataaaaagctggacatgattaagcttagtgaagaaggcctatcaaaagccaagacaggccagaagctagggcttttgcaccagttagccaagtcctgaatgcaaagaaaagttatagaaaaaaatttaaatgcgctactctagtaaacacataaataagatagcaaaacagtcttattgctgaaatagagaaaattttttgtggtctggatagaagatTttaaaaagctagggaaaaaaagaaaaataaatccatgtcagtagaagccaggaaataataaagaaaatacttaataatagaaattaataaaatag-------aaaatataatagataaAT
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29804126 571 + 172585720 tgatgtgtgatcagtgatctttgatgttactattgtaattgttttagggaaccacaaactgcccatataagtcagtgaccttaattgataaatgatgtacgttttgattgctccacccact-----------catctctccctctcttcaggcctttgtattttgtaagacacaacaatattgaaatgagaccaattgataatcctacaatggcctttaagtattcaagtgaaaggaagagtcacatgtctcttatttaaatcaaaagctaggaatgattaagcttagtgaagaaggcctgtcaaaa-ccaagacaggccagaatctcgggcttttgcaccagttagccaagttgtgaatgcaaagaaaagttatagaaaaaaatgtaaatgcactactccggtaaccacataaataagatagcaaaatagtcttattgctgatatggagaaaattttttgtggtctggatagaagatTTTGAAAAGCTAAGGAAAAAAAGAAAAATAAATCCATGTCAGTAGAAGCCAGGAaataataaagaaaatatttaataatagaaattaat--------------aaa--ataatagataaAT
i rheMac8.chr4                    I 13 C 0
s macFas5.chr4                     29466428 571 - 170955103 tgatgtgtgatcagtgatctttgatgttactattgtaattgttttagggaaccacaaactgcccatataagtcagtgaccttaattgataaatgatgtacgttttgattgctccacccact-----------catctctccctctcttcaggcctttctattttgtaagacacaacaatattgaaatgagaccaattgataatcctacaatggcctttaagtattcaagtgaaaggaagagtcacatgtctcttatttaaatcaaaagctaggaatgattaagcttagtgaagaaggcctgtcaaaa-ccaagacaggccagaatctcgggcttttgcaccagttagccaagttgtgaatgcaaagaaaagttatagaaaaaaatgtaaatgcactactccggtaaccacataaataagatagcaaaacagtcttattgctgatatggagaaaattttttgtggtctggatagaagatTTTGaaaagctaaggaaaaaaagaaaaataaatccatgtcagtagaagccaggaaataataaagaaaatatttaataatagaaattaat--------------aaa--ataatagataaaT
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2452960 571 -   2996164 tgatgtgtgatcagtgatctttgatgttactattgtaattgttttagggaaccacaaactgcccatataagtcagtgaccttaattgataaatgatgtacgttttgattgctccacccact-----------catctctccctctcttcaggcctttctattttgtaagacacaacaatattgaaatgagaccaattgataatcctacaatggcctttaagtattcaagtgaaaggaagagtcacatgtctcttatttaaatcaaaagctaggaatgattaagcttagtgaagaaggcctgtcaaaa-ccgagacaggccagaatctcgggcttttgcaccagttagccaagttgtgaatgcaaagaaaagttatagaaaaaaatgtaaatgcactactccggtaaccacataaataagatagcaaaacagtcttattgctgatatggagaaaactttttgtggtctggatagaagatTTTGAAAAGCTAAGGAAAAAAAGAAAAATAAATCCATGTCAGTAGAAGCCAGGAaataataaagaaaatatttaataatagaaattaat--------------aaa--ataatagataaAT
i macNem1.NW_012011356v1          I 13 C 0
s cerAty1.NW_012002711v1             217449 571 +    766320 tgatgtgtgattagtgatctttgacgttaatattgtaattgttttagggaaccacgaactgcccatataagtcagtgaacttaattgataaatgatgtatgttttgattgctccacccact-----------catctctccctctcttcaggcctttctattttgtaagacacaacaatattgaaatgagaccaactgataatcctacaatggcctttaagtattcaagtgaaaggaagagtcacatgtctcttatttaaatcaaaagctagaaatgattaagcttagtgaagaaggcctgtcaaaa-ccaagacaggccagaagctagggcttttgcaccagttagccaagttgtgaatgcaaagaaaagttagagaaaaaaatgtaaatgcactactccggtaaccacataaataagatagcaaaacagtcttattgctgatatggagaaaattttttgtggtctggatagaagatTTTGAAAAGCTAAGGAAAAAAAGAAAAATAAATCCATGTCAGTAGAAGCCAGGAaataataaagaaaatatttaataatagaaattaat--------------aaa--ataatagataaAT
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28729680 582 -  71996105 taatgtgtgattagtgatctttgatgttactattgtaattgttttagggaaccacaaactgcccatataagtcagtgaacataattgataaatgatgtacgttttgattgctccacccact-----------catctctccctctcttcaggcctttctattttgtaagac---acaatattgaaatgagaccaattgataatcctacaatggcctttaagtattcaagtgaaaggaagagtcacatgtctcttagttaaatcaaaagctagaaatgattaagcttagtgaagaaggcctgtcaaaa-ccaagacaggccagaagctagggcttttgcaccagttagccaagttgtgaatgcaaagaaaagttatagaaaaaaatgtaaatgcactactccggtaaacacagaaataagatagcaaaacagtcttattgctgatatggggaaaatttttcgtggtctggatagaagattttgaaaagctagggaaaaaaagaaaaataaatccatgtcagtagaagccaggaaataataaagaaAATAtttaataatagaaattaataaaatagaaaatagaaa--ataatagataaat
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             199137 571 -    352859 tgatgtgtgattagtgatctttgacgttactattgtaattgttttagggaaccacgaactgcccatataagtcagtgaacttaattgataaatgatgtatgttttgattgctccactcact-----------catctctccctctcttcaggcctttctattttgtaagacacaacaatattgaaatgagaccaattgataatcctacaatggcctttaagtattcaagtgaaaggaagagtcacatgtctcttattgaaatcaaaagctaggaatgattaagcttagtgaagaaggcctgtcaaaa-ccaagacaggtcagaatctagggcttttgcaccagttagccaagttgtgaatgcaaagaaaagttatagaaaaaaatgtaaatgcactactctggtaaccacataaataagatagcaaaacagtcttattgctgatatggagaaaattttttgtggtctggatagaagatTTTGAAAAGCTAAGGAAAAAAAGAAAAATAAATCCATGTCAGTAGAAGGCAGGAAATAATAAAGAAAATATTTAATAATGGAAATTAAT--------------AAA--ATAATAGATAAAT
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2359260 585 -   3067355 tgatgtgtgatcagtgatctttgatgttaccattgtaattgttttagggaaccacaaactgcccatataagtcactgaacttaattgataaatgatgtatgttttgattgctccacccact-----------catctctctctctcttcaggcctttctattttgtaagacacaacaatattgaaatgagaccaattaataatcctacaatggcctttaagtattcaagtgaaaggaagagtcacatgtctcttatttaaatcaaaagctagaaatgactaagcatagtgaagaaggcctatcaaaa-ccaagacaggccagaagctagggcttttgcaccagttagccaagttgtgaatgcaaagaaaagttatagaaaaaaatttaaatgcactactccggtaaacacataaataagatagcgaaacagtcttattgctgatatggagaaaattttttgtggtctggatagaagatTTTGTAAAGCTAGGGAAATAAAGAAAAATAAATCCATGTCAGTAGAAGCCAGGaaataataaagaaaatatttaataatagaaatcaataaaatagaaaatataaa--ataatagataaAc
i colAng1.NW_012115566v1          C 0 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1955362 6016 -   2232465 I
e cebCap1.NW_016107522v1             195414 7908 +   3820305 I
e calJac3.chr6                    126576626 1833 - 158406734 I

a score=1662177.000000
s hg38.chr6_GL000254v2_alt           563253 217 +   4827813 taatttttgta-ttttttgtagagacagggtctcaccgtgttgcccaggctggtcttgaactcatgtgctctagtgatctgcctgccttggcctcccaaagtgttgggattgcaggcatgagccacctcgccctgccTGAGTTAAACTTCTAGTGGAAAACCCCTTTTATATAAGCCAC--AAGCAGTTTCAGACTGTCCAATGTTATTATTACTAACAT
s panTro5.chr6                     29535688 217 + 175400573 taatttttgta-ttttttgtagagacagggtctcaccatgttgcccaggctggtcttgaactcatgagctctagtgatctgcctgccttggcctcccaaagtgttgggattgcaggcatgagccacctcgccctgccTGAGTTAAACTTCTAGTGGAAAACCCCTTTTATATAAGCCAC--AAGCAGTTTCAGACTGTCCAATGTTATTATTACTAACAT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29773974 217 + 173848474 taatttttgta-ttttttgtagagacagggtctcaccatgttgcccaggctggtcttgaactcatgagctctagtgatctgcctgccttggcctcccaaagtgttgggattgcaggcatgagccacctcgccctgccTGAGTTAAACTTCTAGTGGAAAACCCCTTTTATATAAGCCAC--AAGCAGTTTCAGACTGTCCAATGTTATTATTACTAACAT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5576785 217 +   6154872 taatttttgta-ttttttgtagagacagggtctcaccatgttgcccaggctggtcttgaactcgtgagctctagtgatctgcctgccttggcctcccaaagtgttgggattgcaggcatgagccacctcgccctgccTGAGTTAAACTTCTAGTGGAAAACCCCTTTTATATAAGCTAC--AAGCAGTTTCTGACTGTCCAATGTTATTATTACTAACAT
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     10356 219 +     39990 taatttttgta-ttttttgtggagacagggtctcaccatgttgcccaggctggtcttgaactcatgagctctagcgatctgcctgccttggcctcccaaagtgttgggattgcaggcatgagccacctcgccctgccTGAGTTAAACTTCTAGTGGAAACCCCCTTTTATATAAGCCACATAGGCAGTTTGGGACTGTCCAATGTTATTATTACTAACAT
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29804697 219 + 172585720 taatttttgta-ttttttgtggagacagggtctcaccatgttgcccaggctggtcttgaactcatgagctgtagtgatctacctgccttggcctctcaaagtgttgggattgcaggcatgagccacctcgccctgccTGAGGTAAACTTCTAGTGGAAAACACCTTTTATATAAGCCACATAAGCAGCTTCAGACTGTCCAATGTTATTATTACTAACAT
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29466999 219 - 170955103 taatttttgta-ttttttgtggagacagggtctcaccatgttgcccaggctggtcttgaactcatgagctgtagtgatctacctgccttggcctctcaaagtgttgggattgcaggcatgagccacctcgccctgccTGAGGTAAACTTCTAGTGGAAAACACCTTTTATATAAGCCACATAAGCAGCTTCAGACTGTCCAATGTTATTATTACTAACAT
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2453531 219 -   2996164 taatttttgta-ttttttgtggagacagggtctcaccatgttgcccaggctggtcttgaactcatgagctgtagtgatctacctgccttggcctctcaaagtgttgggattgcaggcatgagccacctcgccctgccTGAGGTAAACTTCTAGTGGAAAACACCTTTTATATAAGCCGCATAAGCAGCTTCAGACTGTCCAATGTTATTATTACTAACAT
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             218020 219 +    766320 taatttttgta-ttttttgtggagacagagtctcaccatgttgcccaggctggtcttgaactaatgagctgtagtgatctacctgccttggcctctcaaagtgttggaattgcaggcatgagccacctcgccctgccTGAGGTAAACTTCTAGTGGAAAACACCTTTTATATAAGCCACATAAGCAGCTTCAGACTGTCCAATGTTATTATTACTAACAT
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28730262 219 -  71996105 taatttttgta-ttttttgtggagacagggtctcaccatgttgcccaggatggtcttgaactcatgAgctctagtgatctacctgccttggcctctcaaagtgttgggattgcaggcatgagccacctcgccctgcctgagttaagcttctagtggaaaaccccttttatataagccacataagcagcttcagactgtccaatGTTATTGTTACTAACAT
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             199708 219 -    352859 taatttttgta-ttttttgtggagacagggtctcaccatgttgcccaggctggtcttgaactcatgagctgtagtgatctacctgccttggcctctcaaagtgttgggattgcaggcatgagccacctcgccctgccTGAGGTAAACTTCTAGTGAAAAACACCTTTTATATAAGCCACATAAGCAGCTTCAGACTGTCCAATGTTATTATTACTAACAT
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2359845 220 -   3067355 taatttttgtatttttttgtggagacagggtctcaccatgttgcccaggctggtcttgaactcatgagctctagtgatctacctgccttggcctctcaaagtgttgggattgcaggcatgagccatctcgccctgcTTGAGTTAAACTTCTAGTGGAAAACCCCTTTTATATAAGCCACATAAGCAGTTTCAGACTGTCCAATGTTATTATTACTAACAT
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126578459 216 - 158406734 taatttttgtatttttttgtagagacagggtctcactatgttgcccaggcagatcttgaactcatgagctctagtg----gcccgcctcggcctcctaaagtgttgagattgcagacatgagccacctgaccctgccTGAATTAAAGTTGGAGTGGAAAACCCTTTTGATGTAAGCCACATAAGCAGCTTCAGACTGCCCGGTGTTAGTATTACTAATGT
i calJac3.chr6                    I 1833 C 0
s cebCap1.NW_016107522v1             203322 215 +   3820305 taatttttgta-ttttttgtaaagacagggtctcactatgttgcccaggcaggtcttgaactaacgagctctagtg----gcccgcctcggcctcctaaagtgttgggattgcagacatgagccacctgaccctgccTGAATTAAACTTCGAGTGGAAAACCCTTTTGATGTAAGCCACATAAGCAGCTTCAGACTGCCCGGTGTTATTATTACTAATAT
i cebCap1.NW_016107522v1          I 7908 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1955362 6016 -   2232465 I

a score=2442016.000000
s hg38.chr6_GL000254v2_alt           563470 327 +   4827813 AAATTAATGTAGGCTTTCTTTTATCCTAGAGGAGTTGTGGAAAAACATCCTCATGGCATGAATTATGAGTCAGAATATTAAAGGCATAGACACAGGAGTTGgaaattg-------------------------------------aaagtgtagatga-----aaaaaaaagaaaaagaaTTTT---ACAATATCAAAATTAGATTTTTTCACTGAATTCAAAAAGGTCTCCACAAAACTTTTGTAAGGGA---------------------TTCAA----ACCCTTCCTTtaa----a---aaataaataaataaataTTTCTTAATATCAGTCTGTAGTTACTGTATCATCAGGAA--CAGGTTTTG-AAAATTATTGTTTATGCTGAGAAAACAACTATCTGAA
s panTro5.chr6                     29535905 327 + 175400573 AAATTAATGTAGGCTTTCTTTTATCCTAGAGGAGTTGTGGAAAAACATCCTCATGGCATGAATTATGAGTCAGAATATTAAAGGCATAGACACAGGAGTTGgaaattg-------------------------------------aaagtgtagatga-----aaaaaaaagaaaaagaaTTTT---ACAATATCAAAATTAGATTTTTTCACTGAATTCAAAAAGGTCTCCACAAAACTTTTGTAAGGGA---------------------TTCAA----ACCCTTCCTTtaa----a---aaataaataaataaataTTTCTTAATATCAGTCTGTAGTTACTGTATCATCAGGAA--CAGGTTTTG-AAAATTATTGTTTATGCTGAGAAAACAACTATCTGAA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29774191 326 + 173848474 AAATTAATGTAGGCTTTCTTTTATCCTAGAGGAGTTGTGGAAAAACATCCTCATGGCATGAATTATGAGTCAGAATATTAAAGGCATAGACACAGGAGTTGGAAATTG-------------------------------------AAAGTGTAGATGA-----AAAAAAAAG-AAAAGAATTTT---ACAATATCAAAATTAGATTTTTTCACTGAATTCAAAAAGGTCTCCACAAAACTTTTGTAAGGGA---------------------TTCAA----ACCCTTCCTTtaa----a---aaataaataaataaataTTTCTTAATATCAGTCTGTAGTTACTGTATCATCAGGAA--CAGGTTTTG-AAAATTATTGTTTATGCTGAGAAAACAACTATCTGAA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5577002 326 +   6154872 AAATTAATGTAGGCTTTCTTTTATCCTAGAGGAGTTGTGGAAAAACATCCTCATGGCATGAATTATGAGTCAGAATATTAAAGGCATAGACACAGGAGTTGGAAATTG-------------------------------------AAAGTGTAGATGA-----AAAAAAAGA-AAAAGAATTTT---ACAATATCAAAATTAGATTTTTTCACTGAATTCAAAAAGGTCTCCACAAAACTTTTGTAAGGGA---------------------TTCAA----ACCCTTCCTTtaa----a---aaataaataaataaataTTTCTTAATATCAGTCTGTAGTTATTGTATCATCAGGAA--CAGGTTTTG-AAAATTATTGTTTATGCTGAGAAAACAACTATCTGAA
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     10575 319 +     39990 AAATTAAGATATGCTTTCTTTTATCCTAGAGGAGTTGTGGAAAAACATCCTCATGGCATGAATTATGAGTCAGAATATTAAAGGTGTAGACAC-GGAGTTGGAAATTG-------------------------------------AAAGTGTAGATGG-----AAAAAAAAA-GAAAAAATTTT---ACAATATCGAAATTAGATTTTTTCACTGAATTCAAAAAGGTCTACACAAAACTTTTGTAAGGGA---------------------TTCAA----ACCCTTGCTTTAA----A-------AAATAAATAAATATTTCTTAATACCAGTGTGT--TTACTATATCATCAGGAA--CAGGTTTTG-GAAATTATTGTTTATGTTGAGAAAACAACTATCTGAA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29804916 334 + 172585720 AAATTAATACGGGCTTTCTTTTATCCTGGAGGAGTTGTGGAAACACATCTTCATGGCTTGAATTAGGAGTCAGAATATTAAAGGTGTAGACACAGGAGTTGGAAATTG-------------------------------------AAAGTGTAGATGG-----AAAAAAAAA-GAAAGAATTTTATGACAATATCGAAATTAGATTTTTTCACTGAATTCAAAAAGGTCTACACAGAACTTTTGTAAGGGA---------------------TTCAA----ACCCTTGCTTTAAaaataaataaataaataaataaataTTTCTTAATACCAATGTGT--TTACTGTTTCATCAGGAG--CAGGTTTTG-AAAATTATTGTTTATGTTGAGAAAACAACCATCTGAA
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29467218 335 - 170955103 AAATTAATACGGGCTTTCTTTTATCCTGGAGGAGTTGTGGAAACACATCTTCATGGCTTGAATTAGGAGTCAGAATATTAAAGGTGTAGACACAGGAGTTGGAAATTG-------------------------------------AAAGTGTAGATGG----AAAAAAAAAA-GAAAGAATTTTATGACAATATCGAAATTAGATTTTTTCACTGAATTCAAAAAGGTCTACACAGAACTTTTGTAAGGGA---------------------TTCAA----ACCCTTGCTTTAAaaataaataaataaataaataaataTTTCTTAATACCAATGTGT--TTACTGTTTCATCAGGAG--CAGGTTTTG-AAAATTATTGTTTATGTTGAGAAAACAACCATCTGAA
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2453750 332 -   2996164 AAATTAATACGGGCTTTCTTTTATCCTGGAGGAGTTGTGGAAACACATCTTCATGGCTTGAATTAGGAGTCAGAATATTAAAGGTGTAGACACAGGAGTTGGAAATTG-------------------------------------AAAGTGTAGATGG---AAAAAAAAAAA-GAAAGAATTTTATGACAATATCGAAATTAGATTTTTTCACTGAATTCAAAAAGGTCTACACAGAACTTTTGTAAGGGA---------------------TTCAA----ACCCTTGCTTTAA----aaataaataaataaataaataTTTCTTAATACCAATGTGT--TTACTGTTTCATCAGGAG--CAGGTTTTG-AAAATTATTGTTTATGTTGAGAAAACAACCATCTGAA
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             218239 332 +    766320 AAATTAATACGAGCTTTCTTTTATCCTGGAGGAGTTGTGGAAACACATCTTCATGGCTTGAATTAGGAGTCAGAATATTAAAGGTGTAGACACAGGAGTTGGAAATTG-------------------------------------AAAGTGTAGATGA---AAAAAAAAAAA-GAAAGAATTTTATGACAATATCGAAATTAGATTTTTTCACTGAATTCAAAAAGATCTACACAGAACTTTTGTAAGGGA---------------------TTCAA----ACCCTTGCTTTAA----aaataaataaataaataaataTTTCTTTATACCAGGGTGT--TTACTGTTTCATCAGGAG--CAGGTTTTG-AAAATTATTGTTTATGTTGAGAAAACAACTATCTGAA
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28730481 336 -  71996105 AAATTAATATGGGCTTTCTTTTATCCTGGAGGAGTTGTGGAAACACATCTTCATGGCTTGAATTAGGAGTCAGAATATTAAAGGTGTAGACACAGGAGTTGGAAATTG-------------------------------------AAAGTGTAGATGGAAAAAAAAAAAAAA-GAAAGAATTTTATGACAATATCGAAATTAGATTTTTTCACTGAATTCAAAAAGATCTACACAGAACTTTTGTAAGGGA---------------------TTCAA----ACCCTTGCTTTAA----AAACAAATAAATAAATAAATATTTCTTAATACCAGGGTGT--TTACTGTTTCATCAGGAG--CAGGTTTTgaaaaattattgtttatgttgAGAAAACAACTATCTGAA
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             199927 332 -    352859 AAATTAATACGGGCTTTCTTTTATCCTGGAGGAGTTGTGGAAACACATCTTCATGGCTTGAATTAGGAGTCAGAATATTAAAGGTGTAGACACAGGAGTTGGAAATTG-------------------------------------AAAGTGTAGATGG---AAAAAAAAAAA-GAAAGAATTTTATGACAATATCGAAATTAGATTTTTTCACTGAATTCAAAAAGATCTACACAGAACTTTTGTAAGGGA---------------------TTCAA----ACCCTTGCTTTAA----aaataaataaataaataaataTTTCTTTATACCAGTGTGT--TTACTGTTTCATCAGGAG--CAGGTTTTG-AAAATTATTGTTTATGTTGAGAAAACAACTATCTGAA
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2360065 334 -   3067355 AAATTAATATGGGCTTTTTTTTATCCTGGAGGAGTTGTGGAAAAACATCTTCATGGCTTGAATTATGAGTCAGAATATTAAAGGTGTAGACACAGGAGTTGGAAATTG-------------------------------------AAAGTGTAGATGA-----AAAAAAAAA-GAAAGAACTTTACAACAATATCAAAATTAGATTTTTTCACTGAATTCAAAAAGGTCTACACAGAACTTTTGTAAGGGA---------------------TTCAA----ACCTTTGCTTTAAaaataaataaataaataaataaataTTTCTTAATACCAGTGTGT--TTACTGTTTCATCAGGAG--CAGGTTTTG-AAAATTATTGTTTATGTTGAGAAAACAACTATCTGAA
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126578675 357 - 158406734 AAATGAATATGGGCTTTCTTATATCCTAGAGGAGTTGT--GAAAACATCTTCATGGCATGAATTACGAGTCAGAATATTAAAGTTGTAGAAGGAAGAGTTGGAAACTGAAAGTGTAACTCCGGGAGGCGGAGGTTGCGGTTTGCCAAAGTGTAGGTGG----AAAAAGGAAA-GAAAGAATTTTACAACAATATCAAAATTAAA-ATTTTCACTGAACTCAAAAAGGTCTACATAAAACTTTTGTATGGGA---------------------TTCAG----AACCTTGCTTTAA----A--------AATAAATAAATACTTCCTAATACCAGTGCGT--TTACTGTATGGTCAGGAA--CAGGTTTGG-AAAATTATTGTTTAAGTTGAGAAAACAACTATCTCAA
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             203537 316 +   3820305 AAATGAATATGGGCTTTCTTATACCCTAGAGGAGTTGTGGGAAAACATCGTCACAGCATGAATTACGAGTCAGAATATTAAAGTTGTAGAAGGAAGAGTTGGAAACTG-------------------------------------AAAGTGTAGGTGG----GAAAAAGAAA-G--AGAGTTTTACAACAATATCAAAATTAAA-TTTTTCACTGAACTCAAAAACGTCTACACAAAACTTTTGTACAGGA---------------------TTCAG----ATCTTTGCTTTAA----A--------AATAAATAAATACTTCTTAATACCAGTGTGT--TTACTGTATTGTCAGGAA--CAGGTTTTG-AAAATTA----TTAAGTTGAGAAAACAGCTATCTCAA
i cebCap1.NW_016107522v1          C 0 C 0
s otoGar3.GL873742                  1961378 353 -   2232465 aaaccaatatgggctttctcatagcaaagggaaGTTGTTGAAGAAAGCCTTCATGGCAGCAATCAAGAGTTAGAATCTTAAAGTTGTAGATACAGGGATTGGAAATTG-------------------------------------AAAAAGTAGATGA-AAAGGAAAAAAGA-GGAAGAATTTTACAATAACATTGACATCAGC-CTTTTCACTGAATTCAAAAATGCCTCCAAAAAACTTTCATACAGAAATTTATGGTATGCAACTTCCTTTCAAGGAGATTCTTCCTTTAA----A-------AAGTAAATACATGCTTCCTAATACCTGTGTGT--TTACTATAACTTCAGGGGGAGAGAGCTTG-AAAATTATTATTTATGTTGAGACAACCACTATTTGAA
i otoGar3.GL873742                I 6016 I 454
e canFam3.chr35                    26204327 64688 +  26524999 T

a score=2437606.000000
s hg38.chr6_GL000254v2_alt           563797 341 +   4827813 TATAACTAATAACCATTATTACTAGATTGATTCTAGGAACATAGATAAATTTAAATTTATTTTTAAAAGACAAACATTTTTAAT-ATTTGAAAATATAGGTCACCCTGAGCTTTCTAGTAATTGGAATGAATGAC----AATTGCTTTTGTTTGCTAACACATCCATTTGTCTACAATTTTCTTAATGTATTTAATTCTGAAATGATTCATTCAGTTTCGGTCTGATGAAGAGAGTAAAGTGAAAATATTACTCATCAATTGAAATATTACTATAGG--GTCTT-TTTGT-AACTG----TTTTCTTTGTCATTGGATGCTCTTAGCATGTATTGATTAGATTTAATCAATCTT
s panTro5.chr6                     29536232 341 + 175400573 TATAACTAATAACCATTATTACTAGATTGATTCTAGGAACATAGATAAATTTAAATTTATTTTTAAAAGACAAACATTTTTAAT-ATTTGAAAATATAGGTCACCCTGAGCTTTCTAGTAATTGGAATGAATGAC----AATCGCTTTTGTTTGCTAACACATCCATTTGTCTACAATTTTCTTAATGTATTTAATTCTGAAATGATTCATTCAGTTTCGGTCTGATGAAGAGAGTAAAGCAAAAATATTACTCATCAATTGAAATATTACTATAGG--GTCTT-TTTGT-AACTG----TTTTCTTTGTCATTGGATGCTCTTAGCATGTATTGATTAGATTTAATCAATCTT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29774517 341 + 173848474 TATAACTAATAACCATTATTACTAGATTGATTCTAGGAACATAGATAAATTTAAATTTATTTTTAAAAGACAAACATTTTTAAT-ATTTGAAAATATAGGTCACCCTGAGCTTTCTAGTAATTGGAATGAATGAC----AATCGCTTTTGTTTGCTAACACATCCATTTGTCTACAATTTTCTTAATGTATTTAATTCTGAAATGATTCATTCAGTTTCGGTCTGATGAAGAGAGTAAAGCGAAAATATTACTCATCAATTGAAATATTACTATAGG--GTCTT-TTTGT-AACTG----TTTTCTTTGTCATTGGATGCTCTTAGCATGTATTGATTAGGTTTAATCAATCTT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5577328 341 +   6154872 TATAACTAATAACCATTATTACTAGATTGATTCTAGGAATGTAGATAAATTTAAATTTATTTTTAAAAGACAAACATTTTTAAT-ATTTGAAAATATAGGTCACCCTGAGCTTTCTAGTAATTGGAATGAATGAC----AATCGCTTTTGTTTGCTAACACATCCATTTGTCTACAATTTTCTTAATGTATTTAATTCTGAAACGATTCATTCAGTTTTGGTCTGATGAAGAGAGTAAAGTGAAAATATTACTCATCAATTGAAATACTACTATAGG--GTCTT-TTTGT-AACTG----TTTTCTTTGTCATTGGATGCTCTTAGCATGTATTGATTAGATTTAATCAATCTT
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     10894 342 +     39990 TATAACTAACAACCATTATTACTAGATTGATTCTAGGAACATAGATAAATTTAAATTTATTTTTAAAAGACAAACATTTTTAATAATTTGAAAATACAGGTCAGCCTGAGCTTTCTAGTGACTGGAATGAATGAC----AATTGCTTTTGTTTGCTAACACATCCATTTGTCTACAGTTTTCTTAACATATTTAATTCTGAAATGATTCATTCATTTATGGTCTGATGAAGAGAGTAAAGTGAAAATATTACTCATCAATTAAAATATTA----GGG--CTTTT-TTTTT-AACTGTTTATTTTTATTGTCATTGGATGCTCTTAGCATGTATTGATTTGATTTAACCAGTCTT
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29805250 345 + 172585720 TATAACTAATAACCATTATTACTAGATTGAGTCTAGGAACATAGATACATTTAAATTTATTTTTAAAAGACAAACATTTTTAAT-A-TTGAAAATATAGGTCACCCTGAGCTTTCTAGTAATTGGAATGAATGAC----AATCGCTTTTGTTTGCTAACACATCCATTTGTCTACAATTTTCTTAACGTATTTAATTCTGAAACGACTCATTCAGTTTCGGTCTACTGAAGAGAGTAAAGTGAAAATA-TACTCATCAATTGATATATTACTTAGGG-TTTTTT-TTTTTTAACTGTTTACTTTGATTGTCATTGGATGCTCTTAGCATGTATTAATTAGTTTTAACCAATCTT
i rheMac8.chr4                    C 0 I 12
s macFas5.chr4                     29467553 345 - 170955103 TATAACTAATAACCATTATTACTAGATTGAGTCTAGGAACATAGATACATTTAAATTTATTTTTAAAAGACAAACATTTTTAAT-A-TTGAAAATATAGGTCACCCTGAGCTTTCTAGTAATTGGAATGAATGAC----AATCGCTTTTGTTTGCTAACACATCCATTTGTCTACAATTTTCTTAACGTATTTAATTCTGAAACGACTCATTCAGTTTCGGTCTACTGAAGAGAGTAAAGTGAAAATATTACTCATCAATTGATATATTACTTAGGG--TTTTT-TTTTTTAACTGTTTACTTTGATTGTCATTGGATGCTCTTAGCATGTATTAATTAGTTTTAACCAATCTT
i macFas5.chr4                    C 0 I 12
s macNem1.NW_012011356v1            2454082 345 -   2996164 TATAACTAATAACCATTATTACTAGATTGAGTCTAGGAACATAGATACATTTAAATTTATTTTTAAAAGACAAACATTTTTAAT-A-TTGAAAATATAGGTCACCCTGAGCTTTCTAGTAATTGGAATGAATGAC----AATCGCTTTTGTTTGCTAACACATCCATTTGTCTACAATTTTCTTAACGTATTTAATTCTGAAACGACTCATTCAGTTTCGGTCTACTGAAGAGAGTAAAGTGAAAATATTACTCATCAATTGATATATTACTTAGGG--TTTTT-TTTTTTAACTGTTTACTTTGATTGTCATTGGATGCTCTTAGCATGTATTAATTAGTTTTAACCAATCTT
i macNem1.NW_012011356v1          C 0 I 12
s cerAty1.NW_012002711v1             218571 345 +    766320 TATAACTAATAACCATTATTACTAGATTGAGTCTAGGAACATAGATACATTTAAATTTATTTTTAAAAGACAAACATTTTTAAT-A-TTGAAAATATAGGTCACCCTGAGCTTTCTAGTAATTGGAATGAATGAC----AATCGCTTTTGTTTGCTAACACATCCATTTGCCTACAATTTTCTTAACGTATTTAATTCTGAAACGACTCATTCAGTTTCGGTCTACTGAAGAGAGTAAAGTGAACATATTACTCATCAATTGATATATTACTTAGGG--TTTTT-TTTTTAAACTGTTTACTTTGATTGTCATTGGATGCTCTTAGCATGTATTAATTAGTTTTAACCAATCTT
i cerAty1.NW_012002711v1          C 0 I 12
s chlSab2.chr17                    28730817 334 -  71996105 TATAACTAATAACCATTATTACTAGATTGATTCTAGGAACATAGATACATTTAAATTTATTTTTAAAAGACAAACATTTTTAAC-A-TTGAAAATAAAGGTCACCCTGAGCTTTCTAGTAATTAGAATGAATGAC----AATCGCTTTTGTTTGCTAATACATCCATTTGTCTACAATTTTCTTAACGTATTTAATTCTGAAACAACTCATTCAGTTTCGGTCTGCTGAAGAGAGTAAAGTGAAAATATTACTCATCAATTGATATATGACTTAGGG--TTTTT-CTCTG-----------TTTGATTGTCATTGGATGCTCTTAGCATGTATTAATTAGATTTAACCAATCTT
i chlSab2.chr17                   C 0 I 13
s manLeu1.NW_012099655v1             200259 344 -    352859 TATAACTAATAACCATTATTACTAGATTGATTCTAGGAACATAGATACATTTAAATTTATTTTTAAAAGACAAACATTTTTAAT-A-TTGAAAATATAGGTCACTCTGAGCTTTCTAGTAATTGGAATGAATGAC----AATTGCTTTTGTTTGCTAACACATCCATTTGTCTACAATTTTCTTAATGTATTTAATTCTGAAACAACTCATTCAGTTTCAGTCTGCTGAAGAGAGTAAAGTGAACATATTACTCATCAATTGATACATTACTTAGGG--TTTTT-TTTTT-ACCTGTTTACTTTGATTGTCATTGGATGCTCTTAGCATGTATTAATTAGATTTAACCAATCTT
i manLeu1.NW_012099655v1          C 0 M 3510
s colAng1.NW_012115566v1            2360399 346 -   3067355 TATAAGTAATAACCATTATTACTAGATTGATTCTAGGAACATAGATACATTTAAATTTATTTTTAAAAGAGAAACATTTTTAAT-A-TTGAAAATATAGGTCACCCTGAGCTTTCTAGTAATTAGAATGAATGAC----AGTCTCTTTTGTTTGCTGACACATCCATTTGTCTACAATTTTCTTAACATATTTAATTCTGAAACAATTCATTCAGTTTCGGTCTGCTGAAGAGAGTAAAGTGAAAATATTACTCATCAATTAATATATTACTTAGGG--TTTTTATTTTTTAACTGTTTACTTTGATTGTCATTGGATGCTCTTAGCATGTATTAATTAGATTTAACCAATCTT
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126579032 350 - 158406734 TACAACTAATAACCATTATTATTAGATTGATTCTAGGAACATAGATACatttaaatttatttttaaaagacaaagatttttaat-atttgaaaatataGGTCACCCTGCACTTTCCAGTAATTGGAATGAATGACATTTAATAAC--TTATTTGCTAACACATCCATTTGTCTACAATCTTCTTAACGTATTTAATTCTGAAATGAATCATTCAGTTTTGGTCTGATGAAGAGGTTAGCCTGAAAATATTACTCATCAATTGAAATATTACTTAGGGTTTTTTT-TTTTTTTACTGTTCACTTTAATGAGCATTGGATTCTCTTGGCATGTATTGGTTAGATTTAACCAATCTT
i calJac3.chr6                    C 0 I 10
s cebCap1.NW_016107522v1             203853 350 +   3820305 TACAACTAATAATCATTATTATTAGATTGATTCTAGGAACATAGATACATTTAAATTTATTTTTAAAAGACAAAGATTTTTAAT-ATTTGAAAATATAGGTCACCCTGTGCTTTCTAGTAATTGGAATGAATGACATTTAATAACTTTTGTTTGCTAACACATCCATTTGTCTACAGTCTTCTTAACGTATTTAATTCTGAAATGAATCATTCAGTTTTGGACTGATGGGGAGGGTAGAGTGAAAATATTACTCATCAATTGAAATATTACTTAGGG--TTTTT-TGTTTTTACTGTTTACTTTGATAAGCATTGGATGCTCTTGGCATGTATTGATTAGATTTAACCAATCTT
i cebCap1.NW_016107522v1          C 0 I 3
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1961731 454 -   2232465 I

a score=38643.000000
s hg38.chr6_GL000254v2_alt           564138 8 +   4827813 AAAAAAAA
s panTro5.chr6                     29536573 8 + 175400573 AAAAAAAA
i panTro5.chr6                    C 0 I 2
s panPan2.chr6                     29774858 8 + 173848474 AAAAAAAA
i panPan2.chr6                    C 0 I 1
s gorGor5.CYUI01015250v1            5577669 8 +   6154872 CAAAAAAA
i gorGor5.CYUI01015250v1          C 0 I 3
s nomLeu3.chr1a_JH996256_1_random     11236 8 +     39990 TAAAAAAA
i nomLeu3.chr1a_JH996256_1_random C 0 I 3
s rheMac8.chr4                     29805607 8 + 172585720 AAAGCAAA
i rheMac8.chr4                    I 12 C 0
s macFas5.chr4                     29467910 8 - 170955103 AAAGCAAA
i macFas5.chr4                    I 12 C 0
s macNem1.NW_012011356v1            2454439 8 -   2996164 AAAGCAAA
i macNem1.NW_012011356v1          I 12 C 0
s cerAty1.NW_012002711v1             218928 8 +    766320 AAAGCAAA
i cerAty1.NW_012002711v1          I 12 C 0
s chlSab2.chr17                    28731164 8 -  71996105 AAAGCAAA
i chlSab2.chr17                   I 13 C 0
s colAng1.NW_012115566v1            2360745 8 -   3067355 AAAAAAAA
i colAng1.NW_012115566v1          C 0 M 1870
s calJac3.chr6                    126579392 8 - 158406734 AAAACAAA
i calJac3.chr6                    I 10 C 0
s cebCap1.NW_016107522v1             204206 8 +   3820305 AAAGCAAA
i cebCap1.NW_016107522v1          I 3 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1961731 454 -   2232465 I
e manLeu1.NW_012099655v1             200603 3510 -    352859 M

a score=2435252.000000
s hg38.chr6_GL000254v2_alt           564146 455 +   4827813 GAAAAACACACATCTCTCAAATTTTAATGTGCCTTTATCT-TGGAAAGTATTTTATTAAAGTTTATCCTATTTGAACTATCCCACAGTTTTCTCTAAATTATCCATTATTGTTGTATGTTGAAATTTTTGGATTATTTGTCTACTAACCACCATGTATAATATTGAATCCACCTACCATCTGTATCCAAAGCTTTTACAAAAACATTGATCAGATCACAATCAAAGTCAATGTTAAAATAGAAAATTCTTTCCTCAAAATGAAAAAAACCTCAGAGTA-TTTTTTAATCATTCATTAATTGTC--TCTTATTGTTCATAAACAGCCTTATGAAAAC--GTGTGATCCTTACTGAGACAC--------CATATTGTGGTACTTAATGTGGTACTATATTTGTCACTGGAGATCAAAATAAAGTTTATTGGTCTGCAACATTTACAATTCAGTTTCTtatatt--tatatata
s panTro5.chr6                     29536583 456 + 175400573 GAAAAACACACATCTCTCAAATTTTAATGTGCCTTTATCTATGGAAAGTATTTTATTAAAGTTTATCCTATTTGAACTATCCCACAATTTTCTCTAAATTATCCATTATTGTTGTATGTTGAAATTTTTGGATTATTTGTCTACTAACCACCATGTATAATATTGAATCCACCTACCATCTGTATCCAAAGCTTTTACAAAAACATTGATCAGATCACAATCAAAGTCAATGTTAAAATAGAAAATTCTTTCCTCAAAATGAAAAAAACCTCAGAGTA-TTTTTTAATCATTCATTAATTGTC--TCTTATTGTTCATAAACAGCCTTATGAAAAC--GTGTGATCCTTACTGAGACAC--------CATATTGTGGTACTTAATGTGGTACTATATTTGTCACTGGAGATCAAAATAAAGTTTATTGGTCAGCAACATTTACAATTCAGTTTCTtatatt--tatatata
i panTro5.chr6                    I 2 C 0
s panPan2.chr6                     29774867 456 + 173848474 GAAAAACACACATCTCTCAAATTTTAATGTGCCTTTATCTATGGAAAGTATTTTATTAAAGTTTATCCTATTTGAACTATCCCACAATTTTCTCTAAATTATCCATTATTGTTGTATGTTGAAATTTTTGGATTATTTGTCTACTAACCACCATGTATAATATTGAATCCACCTACCATCTGTATCCAAAGCTTTTACAAAAACATTGATCAGATCACAATCAAAGTCAATGTTAAAATAGAAAATTCTTTCCTCAAAATGAAAAAAACCTCAGAGTA-TTTTTTAATCATTCATTAATTGTC--TCTTATTGTTCATAAACAGCCTTATGAAAAC--CTGTGATCCTTACTGAGACAC--------CATATTGTGGTACTTAATGTGGTACTATATTTGTCACTGGAGATCAAAATAAAGTTTATTGGTCAGCAACATTTACAATTCAGTTTCTtatatt--tatatata
i panPan2.chr6                    I 1 C 0
s gorGor5.CYUI01015250v1            5577680 457 +   6154872 GAAAAACACACATCTCTCAAATTTTAATGTGCCTTTGTCTATGGAAAGTATTTTATTAAAGTTTATCCTATTTGAACTACCCCACAATTTTCTCTAAATTATCCATTATTGTTGTATGTTGAAATTTTTGGATTATTTGTCTACTAACCACCATGTATAATATTGAATCCACCTACCATCTGTATCCAAAGCTTTTACAAAAACATTGATCAGATCACAATCAAAGTCAATGTTAAAATAGAAAATTTTTTCCTCAAAATGAAAAAAACCTCAGAGTATTTTTTTAATCATTCATTAATTGTC--TCTTATTGTTCATAAACAGCCTTATGAAAAC--GTGTGATCCTTACTGAGACAC--------CATATTGTCGTACTTAATGTGGTACTATATTTGTCACTGGAGAACAAAATAAAGTTTATTGGTCTTCAACATTTACAATTCAGTTTCTtatatt--tatatata
i gorGor5.CYUI01015250v1          I 3 C 0
s nomLeu3.chr1a_JH996256_1_random     11247 457 +     39990 AAGAAAAACACATCTCTCAAATTTTTATGTGCCTCTATCTATGGGAAGTATTTTATTAAAGTTTATCCTATTTGAACTATCCCACAATTTTCTCTAAATTATCCATTACTGTTGTATGCTGAAATTTTTGGATTACTTGTCTACTAACCACCATGTATAATATTGAATCCACCTACTATCTGTATCCAAAGCTTTTACAAAAATATTGATCAGATCACAATCAAAGTCTATTTTAAAGTAGAAAATTCTTTCCTCAAAATGAAAAAAACTTCAGAGTATTTTTTTGATCATTCATTAATTG----TCTTATTGTTCATAAACAGCCTTATGAAAAA--GTGTGATCCTGATTGAGACAC--------CATATTGTGGTACTTAATGTAGTACTATATTTGTCACTGGAGATCAAAATAAAGTTTATTGGTATGCAacatttacaattcagtttcttatatttatatatata
i nomLeu3.chr1a_JH996256_1_random I 3 C 0
s rheMac8.chr4                     29805615 467 + 172585720 GAAAAACACACATCTCTCAAACTTTAATGTGACTTTATATATGGAAAGTATTTTATTAAAGTTTATCCTATTTGAACTATCACACAATTTTCTCTAAATCATCCATTATTGTTGTATGTTGAAATTTTTGTACTATTTGTCTACTAACCACCATGTATAATATTGAATCCACCTACTATCTGTATCCAAAGCTTTTACGAAAATATTGATCAGATCACAATCAAAGTCTATGTTAAAATAGAAAATTCTTTCCTCAAAATGAAAAGAACCTCAGAGTATTTTTTTGATCATTCATTAATTGTCTTTCTTATTGTTCATAAACAACCTTATGAGAAC--GTGTGATCCTTATTGAGACACTGTATTGTCATATTGTGGTGCTTAATGTGGTACTATAtttgccactggagatcaaaataaagtttattggtctgcaacatttacaattcagtttcttatatt--tatatata
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29467918 467 - 170955103 GAAAAACACACATCTCTCAAACTTTAATGTGACTTTATATATGGAAAGTATTTTATTAAAGTTTATCCTATTTGAACTATCACACAATTTTCTCTAAATCATCCATTATTGTTGTATGTTGAAATTTTTGTACTATTTGTCTACTAACCACCATGTATAATATTGAATCCACCTACTATCTGTATCCAAAGCTTTTATGAAAATATTGATCAGATCACAATCAAAGTCTATGTTAAAATAGAAAATTCTTTCCTCAAAATGAAAAGAACCTCAGAGTATTTTTTTGATCATTCATTAATTGTCTTTCTTATTGTTCATAAACAACCTTATGAGAAC--GTGTGATCCTTATTGAGACACTGTATTGTCATATTGTGGTGCTTAATGTGGTACTATATTTGCCACTGGAGATCAAAATAAAGTTTATTGGTCTGCAACATTTACAATTCAGTTTCTtatatt--tatatata
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2454447 467 -   2996164 GAAAAACACACATCTCTCAAACTTTAATGTGACTTTATATATGGAAAGTATTTTATTAAAGTTTATCCTATTTGAACTATCACACAATTTTCTCTAAATCATCCATTATTGTTGTATGTTGAAATTTTTGTACTATTTGTCTACTAACCACCATGTATAATATTGAATCCACCTACTATCTGTATCCAAAGCTTTTATGAAAATATTGATCAGATCACAATCAAAGTCTATGTTAAAATAGAAAATTCTTTCCTCAAAATGAAAAGAACCTCAGAGTATTTTTTTGATCATTCATTAATTGTCTTTCTTATTGTTCATAAACAACCTTATGAGAAC--GTGTGATCCTTATTGAGACACTGTATTGTCATATTGTGGTGCTTAATGTGGTACTATAtttgccactggagatcaaaataaagtttattggtctgcaacatttacaattcagtttcttatatt--tatatata
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             218936 467 +    766320 GAAAAACACATATCTCTCAAACTTTAATGTGACTTTATATATGGAAAGTATTTTATTAAAGTTTATCCTATTTGAACTATCACACAATTTTCTCTAAATCATCCATTATTGTTGTATGTTGAAATTTTTGTACTATTTGTCTACTAACCACCATGTATAATATTGAATCCACCTACTATCTGTATCCAAAGCTTTTACGAAAATACTGATCAGATCACAATCAAAGTCTATGTTAAAATAGAAAATTCTTTCCTCAAAATGAAAAGAACCTCAGAGTATTTTTTTGATCATTCATTAATTGTCTTTCTTATTGTTCATAAACAACCTTATGAGAAC--GTGTGATCCTTATTGAGACACTGTATTGTCGTATTGTGGTGCTTAATGTGGTACTATAtttgccactggagatcaaaataaagtttattggtctgcaacatttacaattcagtttcttatatt--tatatata
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28731172 467 -  71996105 AAAACACACACATCTCTCAAACTTTAATGTGTCTTTATCTATGGAAAATATTTTATTAAAGTTTATCCTATTTGAACTATCCTACAATTTTCTCTAAATTATTCATTATTGTTGTATGTTGAAATTTTTGTACTATTTGTCTACTAACCACCATGTATAATATTGAATCCACCTACTATCTGTATCCAAAGCTTTTACAAAAATATTGATCAGATCACAATCAAAGTCCATGTTAAAATAGAAAATTCTTTCCTCAAAATGAAAAGAACCTCAGAGTATTTTTTTGATCATTCATTAATTGTCTTTCTTGTTGTTCATAAACAGCCTTATGAGAAC--GTGTGATCCTTATTGAGACACTGCATTGTCATATTGTGGTGCTTAATGTGGTACTATATTTGCCACTGGAGATCAAAATAAAGTTTATTGGTCTGCAACATTTACAATTCAGTTTCTTATATT--TATATATA
i chlSab2.chr17                   C 0 C 0
s calJac3.chr6                    126579400 446 - 158406734 GAAAACCACACATCTCTCAAATTTTAATGTGACTTTATCTATGGGAAGTATTTTATTAAAGTTTATGCTATTCGAATTATCCCACAATTTTCTTGAAATTATCCGTTGTTGTTATATGTTGAG--------ATTCTTTGTCTACTAACCATCAGGTATAATATTGAACCCACCTATTATCTCTATCCAAAGCTTTCACAAAAATATTGATGAGATCGCAATCAAAGATTATATTAAAATAGAAAATTCTTTCCTCAAAATGAAAAAAAGCTAAGAGTA-TTTTTTGGTCATTCATTCATTGTCTTTCTTATTATTCATAAACAGCCTTATGAAAACATGTGTGATCCTTACTGAGACAC--------TGTATTGTGGTACTT-GTGAGGTGCTATATTAGTCACTGGAGATCAAAATAAGGTTTATTGGTCTGCAACATTTACAGTTCAGTTTCTTATGtt--tat-----
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             204214 454 +   3820305 GAAAACCACACATCTCTCAAATTTTAATGTGACTT----TATGGGAAGTATTTTATTAAAGTTTATGCTATTTGAATTATCCCACAATTTTCTCTAAATTATCTGTTATTTTTGTATGCTGAGATTTTTGAATTCTTTGTCTACTAACCATCAAGTATAATATTGAATCCACCTATTACCTGTATCCAAAACTTTCACAAAAATATTGATCAGATCACAATCAAAGACTATGTTAAAATAGAAAATTCTTTCCTCAAAATGAAAAAAAACTAAGAGTA-TTTTTTGATCATTCATTCATTGTCTTTCTTGTTGTTCATAAACAGCCTTATGAAAACGTGTGTGATCCTTACTGAGATAC--------TGTATTGTGGTACTT-ACGAGGTACTATATTAGTCGCTGGAGATCAAAATAA-ATTTATTGGTCTGCAACATTTATAATTCAGTTTCTtatatt--tatatata
i cebCap1.NW_016107522v1          C 0 I 86
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1961731 454 -   2232465 I
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M
e manLeu1.NW_012099655v1             200603 3510 -    352859 M

a score=161881.000000
s hg38.chr6_GL000254v2_alt           564601 72 +   4827813 taattcata--tatataatacacataatataaatcatatacattatatatatatatat------aCACACACACACGGGA
s panTro5.chr6                     29537039 64 + 175400573 taattcata--tatataatacacg--atataaatcatatatattatatatatatata------------CACGCACGGGA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29775323 66 + 173848474 taattcata--tatataatacacataatataaatcatatatattatatatatatata------------CACACACGGGA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5578137 78 +   6154872 taattcata--tatataatacacataatataaatcatatacattatatatatatatatatataCACACACACACAGGGGA
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     11704 49 +     39990 taattcata--tacataatatacataatataaatc---------atatatatatatT--------------------GGA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29806082 65 + 172585720 taattcatatgtatataatatacataatataaattatatat---atacacacatatg------------tataCAGGGAA
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29468385 65 - 170955103 taattcatatgtatataatatacataatataaattatatat---atacacacatatg------------tataCAGGGAA
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2454914 65 -   2996164 taattcatatgtatataatatacataatataaattatatat---atacacacatatg------------tataCAGGGAA
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             219403 65 +    766320 taattcatatgtatataatatacataatataaattatatat---atacacacatata------------tataCAGGGAA
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28731639 65 -  71996105 TAATTCATATGTATATAATATACATAATATAAATTATATAT---ATACACACATAta------------tatacagggaa
i chlSab2.chr17                   C 0 C 0
s calJac3.chr6                    126579846 29 - 158406734 --------------------------atataaatcatat-----atatatatatatG-------------------GGG-
i calJac3.chr6                    C 0 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1961731 454 -   2232465 I
e cebCap1.NW_016107522v1             204668 86 +   3820305 I
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M
e manLeu1.NW_012099655v1             200603 3510 -    352859 M

a score=40799.000000
s hg38.chr6_GL000254v2_alt           564673 7 +   4827813 ACTTAGA
s panTro5.chr6                     29537103 7 + 175400573 ACTTAGA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29775389 7 + 173848474 ACTTAGA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5578215 7 +   6154872 ACTTAGA
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     11753 7 +     39990 ACTTAGA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29806147 7 + 172585720 ACTTAGA
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29468450 7 - 170955103 ACTTAGA
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2454979 7 -   2996164 ACTTAGA
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             219468 7 +    766320 ACTTAGA
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28731704 7 -  71996105 acttaga
i chlSab2.chr17                   C 0 C 0
s calJac3.chr6                    126579875 7 - 158406734 ACTTAGG
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             204754 7 +   3820305 ACTTAGG
i cebCap1.NW_016107522v1          I 86 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1961731 454 -   2232465 I
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M
e manLeu1.NW_012099655v1             200603 3510 -    352859 M

a score=698257.000000
s hg38.chr6_GL000254v2_alt           564680 119 +   4827813 GCTATTTTTAAACATTTGCCAAGTAGAATATACAATATATTAAATTTTTGATATTAAAAGTTTTAAAAAATTTTCTTTCAAtgctaagaaggtagattttatgttaagtgtccttatca
s panTro5.chr6                     29537110 119 + 175400573 GCTATTTTTAAATGTTTGCCAAGTAGCATATACAATATATTAAATTTTTGATATTAAAAGTTTTAAAAATTTTTCTTTCAAtgctaagaaggtagattttatgttaagtgtccttatca
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29775396 117 + 173848474 GCTATTTTTAAACGTTTGCCAAGTAGAATATACAATATATTAAATTTTTGATATTAAAAGTTTTAAAAAATTTTCTTTCAATGCTAAGAAGGTAGATTTTATGTT--GTGTCCTTCTCA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5578222 117 +   6154872 GCTATTTTTAAATGTTTGCCAAGTAGAATATGCAATATATTAAATTTTTGATATTAAAAGTTTTAAAAAATTTTCTTTCAATGCTAAGAAGGTAGATTTTATGTT--GTGTCCTTATCA
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     11760 119 +     39990 GCTATTTTTAAATGTTTGCCAAGTAGAATATACAATATATTAAATTTCTGATTTTAAAAGTTTTTAAAATATTTCTTTCAAtgctaagaaggtagattttatgttaagtgtccctatca
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29806154 117 + 172585720 GCTATTTTTAAATGTTTGCCAAGTAAAATATATAATATATTAAATTTTTCATAATAAAAGTTTTTAAAAAATTTCTTTCAATGCTAAGAAGGTAGATTTTATGTT--GTGTCCTTATCA
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29468457 117 - 170955103 GCTATTTTTAAATGTTTGCCAAGTAAAATATATAATATATTAAATTTTTCATACTAAAAGTTTTTAAAAAATTTCTTTCAATGCTAAGAAGGTAGATTTTATGTT--GTGTCCTTATCA
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2454986 117 -   2996164 GCTATTTTTAAATGTTTGCCAAGTAAAATATATAATATATTAAATTTTTCATACTAAAAGTTTTTAAAAAATTTCTTTCAATGCTAAGAAGGTAGATTTTATGTT--GTGTCCTTATCA
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             219475 117 +    766320 GCTATTTTTAAATGTTTGCCAAGTAAAATATATAATATATTAAATTTTTCATGCTAAAAGTTTTTTAAAAATTTCTTTCAATGCTAAGAAGGTAGATTTTATGTT--GTGTCCTTATCA
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28731711 117 -  71996105 gctatttttaaatgtttgccaagtaaaatatataatatattaaatttttcatACTAAAAGTTTTTAAAAAATTTCTTTCAATGCTAAGAAGGTAGATTTTATGTT--GTGTCCTTATCA
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             204113 117 -    352859 GCTATTTTTAAATGTTTGCCAAGTAAAATATACAATATATTAAATTTTTCATACTAAAAGGTTTTTAAAAATTTCTTTCAATGCTAAGAAGGTAGATTTTATGTT--GTGTCCTTACCA
i manLeu1.NW_012099655v1          M 3510 C 0
s calJac3.chr6                    126579882 117 - 158406734 GCTATGTTTAAATGTTTGCCAAGTAGAATGtataatatattaaatttttgatattaaaaattttttt--aatttCTTTCAttgctaagaagatagattttacgttaagtgtccttatta
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             204761 113 +   3820305 GCTATTTTTAAATATTTGCCAAGTAGAAT-----ATATATTAAATTTTTGATCCTAAAATTTTTTTT-AAATTTCTTTAAttgctaagaaggtagatttcatgttaagagtccttatca
i cebCap1.NW_016107522v1          C 0 I 6
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1961731 454 -   2232465 I
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M

a score=30932.000000
s hg38.chr6_GL000254v2_alt           564799 6 +   4827813 TGATTT
s panTro5.chr6                     29537229 6 + 175400573 TGATTT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29775513 6 + 173848474 TGATTT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5578339 6 +   6154872 TGATTT
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     11879 6 +     39990 tgattt
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29806271 6 + 172585720 CGATTT
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29468574 6 - 170955103 CGATTT
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2455103 6 -   2996164 CGATTT
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             219592 6 +    766320 TGATTT
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28731828 6 -  71996105 CGATTT
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             204230 6 -    352859 CGATTT
i manLeu1.NW_012099655v1          C 0 C 0
s calJac3.chr6                    126579999 6 - 158406734 caattt
i calJac3.chr6                    C 0 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1961731 454 -   2232465 I
e cebCap1.NW_016107522v1             204874 6 +   3820305 I
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M

a score=2464.000000
s hg38.chr6_GL000254v2_alt           564805 6 +   4827813 CAAAAA-
s panTro5.chr6                     29537235 6 + 175400573 CAAAAA-
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29775519 6 + 173848474 CAAAAA-
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5578345 6 +   6154872 CAAAAA-
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     11885 5 +     39990 aaaaa--
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s calJac3.chr6                    126580005 6 - 158406734 -aaaaaA
i calJac3.chr6                    C 0 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1961731 454 -   2232465 I
e cebCap1.NW_016107522v1             204874 6 +   3820305 I
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M
e manLeu1.NW_012099655v1             204236 0 -    352859 C
e chlSab2.chr17                    28731834 0 -  71996105 C
e cerAty1.NW_012002711v1             219598 0 +    766320 C
e macNem1.NW_012011356v1            2455109 0 -   2996164 C
e macFas5.chr4                     29468580 0 - 170955103 C
e rheMac8.chr4                     29806277 0 + 172585720 C

a score=-330.000000
s hg38.chr6_GL000254v2_alt           564811 2 +   4827813 -TG
s panTro5.chr6                     29537241 2 + 175400573 -TG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29775525 2 + 173848474 -TG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5578351 2 +   6154872 -TG
i gorGor5.CYUI01015250v1          C 0 C 0
s calJac3.chr6                    126580011 2 - 158406734 TT-
i calJac3.chr6                    C 0 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1961731 454 -   2232465 I
e cebCap1.NW_016107522v1             204874 6 +   3820305 I
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M
e manLeu1.NW_012099655v1             204236 0 -    352859 C
e chlSab2.chr17                    28731834 0 -  71996105 C
e cerAty1.NW_012002711v1             219598 0 +    766320 C
e macNem1.NW_012011356v1            2455109 0 -   2996164 C
e macFas5.chr4                     29468580 0 - 170955103 C
e rheMac8.chr4                     29806277 0 + 172585720 C
e nomLeu3.chr1a_JH996256_1_random     11890 0 +     39990 C

a score=748706.000000
s hg38.chr6_GL000254v2_alt           564813 1368 +   4827813 CCTTTTCCaaggcattcaattaggaaaagaggaagtcaaattgtccctctttgcagatgatatgattgtatatctagaaaaccccatcgtgtcagcccaaaatctccttaagctgataggcaacttcagcaaagtctgaggataaaaaatcaatgtgcaaaaatcacaagcattcttatacaccgataacagacagagagccaaatcatgagtgaactcccattcacaattgcttcaaagagaataaaaacctaggaatccaacttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataaaagaggatacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctaccaatgactttcttcacagagttggaaaaaactactttaaagttcatatggaaccaaaaaagagcctgcattgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgacttcaaactatactacaaggctacagtaaccaaaatagcatggtactggtaccaaaacagatatagaccaatggaacagaacagaggcctcagaaataatgccacatatctaccagtatctgatctttgacaaacctgacaaaaacaagcaatggggaaaggattctctatttaataaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccctccttacaccttatacaaaaattaattcaagatggattaaagacttcaatgttagacctaaaaccagaaaaaccctagaacaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgataaatggaatctaattaaactaaagagcttctgcacagcaaaagaaaccaccatcagagtgaacaggcaacctacaaaatgggagaaaatttttgcaacctactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaccccatcaaaaagtgggcaaaggatatgaacagacacttct-caaaagaagacatttatggagccaaaaaacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaaaagtcaggaaataacaggtgctggagaggatatggagaaacaggaacacttttacact
s panTro5.chr6                     29537243 1368 + 175400573 CCTTTTCCaaggcattcaattaggaaaagaggaagtcaaattgtccctctttgcagatgatatgattgtatatctagaaaaccccatcatctcagcccaaaatctccttaagctgataggcaacttcagcaaagtctgaggataaaaaatcaatgtgcaaaaatcacaagcattcttatacacagataacagacagagagccaaatcatgactgaactcccattcacaattgcttcaaagagaataaaaacctaggaatccaacttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataaaagaggatacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctaccaatgactttcttcacagagttggaaaaaactactttaaagttcatatggaaccaaaaaagagcccacattgccaagtcaatcctaagccagaagaacaaagctggaggcatcatgctacctgacttcaaactatactacaaggctacagtaaccaaaatagcatggtactggtaccaaaacagatatagaccaatggaacagaacagaggcctcagaaataatgctacatatctaccagtatctgatctttgacaaacctgacaaaaacaagcaatggggaaaggattctctatttaataaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacaccttatacaaaaattaattcaagatggattaaagatttcaatgttagacctaaaaccagaaaaaccctagaacaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatggaatctaattaaactaaagagcttctgcacagcaaaagaaaccaccatcagagtgaacaggcaacctacagaatgggagaaaatttttgcaacctacgcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaccccatcaaaaagtgggtgaaggatatgaacagacacttct-caaaagaagacatttatgcagccaaaaaacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacatcagttagaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatatggagaaacaggaacacttttacact
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29775527 1367 + 173848474 CCTTTTCCaaggcattcaattaggaaaagaggaagtcaaattgtccctctttgcagatgatatgattgtatatctagaaaaccccatcgtctcagcccaaaatctccttaagctgataggcaacttcagcaaagtctgaggataaaaaatcaatgtgcaaaaatcacaagcattcttatacacagataacagacagagagccaaatcatgactgaactcccattcacaattgcttcaaagagaataaaaacctaggaatccaacttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataaaagaggatacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctaccaatgactttcttcacagagttggaaaaaactactttaaagttcatatggaatgaaaaaagagcccacattgccaagtcaatcctaagccagaagaacaaagctggaggcatcatgctacctgacttcaaactatactacaaggctacagtaaccaaaatagcatggtactggtaccaaaacagatatagaccaatggaacagaacagaggcctcagaaataatgccacatatctaccagtatctgatctttgacaaacctgacaaaaacaagcaatggggaaaggattctctatttaataaatggtgctgggaaaactggctagccatatgtagaaaggtgaaactggatcccttccttacaccttatacaaaaattaattcaagatggattaaagacttcaatgttagacctaaaaccagaaaaaccctagaacaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatggaatctaattaaactaaagagcttctgcacagcaaaagaaaccaccatcagagtgaacaggcaacctacagaatgggagaaaatttttgcaacctacgcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaccccatcaaaaagtgggcaaaggacatgaacagacacttctacaaaagaagacatttatgcagcc--aaaacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacatcagttagaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatatggagaaacaggaacacttttacact
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5578353 1368 +   6154872 CCTTTTCCaaggcattcaattaggaaaggaggaagtcaaattgtccctctttgcagatgatatgattgtatatctagaaaaccccattgtctcagcccaaaatctccttaagctgataaggaacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaatcacaagcattcttatacaccaataacagacagagagccaaatcatgagtgaactcccattcacaattgcttcaaagagaataaaaacctaggaatccaacttacaagcgatgtgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataaaagaggatacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcatgaaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctaccaatgactttcttcacagagttggaaaaaactactttaaagttcatacagagtgaaaaaagagcccgcatcgccaagtcaatcctaagccaaatgaacaaagctggaggcatcatgctacctgacttcaaactatactacaaggctacagtaaccaaaacagcatagtactggtaccaaaacagatatagaccaatggaacagaacagaggcctcagaaataatgccacatatctaccagtatctgatctttgacaaacctgacaaaaacaagcaatggggaaaggattctctatttaataaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacaccttatacaaaaattaattcaagatggattaaagacttcaatgttagacctaaaaccagaaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaatggacaaatggaatctaattaaactaaagagcttctgcacagcaatagaaaccaccatcagagtgaacaggcaacctacagaatgggagaaaatttttgcaacctactcatctgacaaaggactaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaccccatcaaaaagtgggcaaaggatatgaacagacacttct-caaaagaagacatttatgcagccaaaaaacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagtgagaatggcgatcattaaaaagtcaggaaacaacaggtgctggagaggatatggagaaacaggaacacttttacact
i gorGor5.CYUI01015250v1          C 0 C 0
e canFam3.chr35                    26204327 64688 +  26524999 T
e otoGar3.GL873742                  1961731  454 -   2232465 I
e cebCap1.NW_016107522v1             204874    6 +   3820305 I
e calJac3.chr6                    126580013    0 - 158406734 C
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M
e manLeu1.NW_012099655v1             204236    0 -    352859 C
e chlSab2.chr17                    28731834    0 -  71996105 C
e cerAty1.NW_012002711v1             219598    0 +    766320 C
e macNem1.NW_012011356v1            2455109    0 -   2996164 C
e macFas5.chr4                     29468580    0 - 170955103 C
e rheMac8.chr4                     29806277    0 + 172585720 C
e nomLeu3.chr1a_JH996256_1_random     11890    0 +     39990 C

a score=285526.000000
s hg38.chr6_GL000254v2_alt           566181 436 +   4827813 gttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcaactcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggattataaatcatgctgctaga----aagacacatgcacacatatgtttattgtggcgctattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaacta--tcacaaaggacaaaaacccaaacatcgcatgttctcactcataggtgggaattgaacaat-------gagatcacatggaca-------------------------caggaaggggaaca
s panTro5.chr6                     29538611 435 + 175400573 gttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggtgattcctcagggatctagaactggaaataccatttgacccagccatcccattactggatatatacacaaaggattataaatcatgctgctaga----aagacacatgcacacatatgtttattgtggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacgtatacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattttcagcaaacta--tca-aaaggacaaaaacccaaacatcgcatgttctcactcataggtgggaattgaacaat-------gagaacacatggaca-------------------------caggaaggggaaca
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29776894 435 + 173848474 gttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggtgattcctcagggatctagaactggaaataccatttgacccagccatcccattactggatatatacacaaaggattataaatcatgctgctaga----aagacacacacacacatatgtttattgtggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacgtatacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattttcagcaaacta--tca-aaaggacaaaaacccaaacatcgcatgttctcactcataggtgggaattgaacaat-------gagaacacatggaca-------------------------caggaaggggaaca
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5579721 435 +   6154872 gttggtgggactctaaactagttcaaccatcgtggaagtcagtgtggcgattcctcagggacctagaactagaaatatcatttgacccagccatcccattactgggtatatacccaaaggattataaatcatgctgctaga----aagacacatgcacacgtatgtttattgcggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaatta--tcg-caaggacaaaaacccaaacatcgcatgttctcactcataggtgggaattgaacaat-------gagagcacatggaca-------------------------caggaaggggaaca
i gorGor5.CYUI01015250v1          C 0 C 0
s canFam3.chr35                    26139639 467 +  26524999 gttggtgggaatgggaactggtgctgccactctggaaaactttgtggaggttcctcaaagagttaaaaatagacctgccctacgacccagcaattgcactgttggggatttaccccaaagat----agagatgcagtgaaacgccaggacacctgcaccccgatgtttctagcagcaatgtccacaatagccaaactgtggaaggagcctcggtgtccatcgaaagatgaatggataaagacgatgtggtttatgtatacaatggaatattactcagccattagaaacgacaaatacccaccatttgcttcaacgtggatggaactggagggtattatgctcagtgaagtaagtca-ataggagaagga--caaacagtgtatgttctcattcatttggggaatatgaataatagtgaaagggaatataggggaagggagaggatatgtgtgggaaatatcagaaagggagaca
i canFam3.chr35                   T 64688 I 198
e otoGar3.GL873742                  1961731 454 -   2232465 I
e cebCap1.NW_016107522v1             204874   6 +   3820305 I
e calJac3.chr6                    126580013   0 - 158406734 C
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M
e manLeu1.NW_012099655v1             204236   0 -    352859 C
e chlSab2.chr17                    28731834   0 -  71996105 C
e cerAty1.NW_012002711v1             219598   0 +    766320 C
e macNem1.NW_012011356v1            2455109   0 -   2996164 C
e macFas5.chr4                     29468580   0 - 170955103 C
e rheMac8.chr4                     29806277   0 + 172585720 C
e nomLeu3.chr1a_JH996256_1_random     11890   0 +     39990 C

a score=88212.000000
s hg38.chr6_GL000254v2_alt           566617 160 +   4827813 tcacactctggggcctgttgtggggtggggggagtggggagggatagcattaggagatatacctaatgctaaatgactagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtatcctaaaatt
s panTro5.chr6                     29539046 160 + 175400573 tcacactctggggcctgttgtggggtgggggcagcggggagggatagcattaggagatatacctaatgctaaatgactagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctaaaatt
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29777329 160 + 173848474 tcacactctggggcctgttgtggggtgggggcagtggggagggatagcattaggagatatacctaatgctaaatgactagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctaaaatt
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5580156 160 +   6154872 tcacactctggggcctgttgtggggtggggggagggaggagggatagcattaggagatatacctaatgctaaatgactagttaatgggtgcagcacaccaacatggcacatgtatacatatgttacaaacctgcacgttgtgcacatgtaccctaaaatt
i gorGor5.CYUI01015250v1          C 0 C 0
e canFam3.chr35                    26140106 198 +  26524999 I
e otoGar3.GL873742                  1961731 454 -   2232465 I
e cebCap1.NW_016107522v1             204874   6 +   3820305 I
e calJac3.chr6                    126580013   0 - 158406734 C
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M
e manLeu1.NW_012099655v1             204236   0 -    352859 C
e chlSab2.chr17                    28731834   0 -  71996105 C
e cerAty1.NW_012002711v1             219598   0 +    766320 C
e macNem1.NW_012011356v1            2455109   0 -   2996164 C
e macFas5.chr4                     29468580   0 - 170955103 C
e rheMac8.chr4                     29806277   0 + 172585720 C
e nomLeu3.chr1a_JH996256_1_random     11890   0 +     39990 C

a score=7298.000000
s hg38.chr6_GL000254v2_alt           566777 14 +   4827813 taaagtataattta-------
s panTro5.chr6                     29539206 14 + 175400573 taaagtataatttt-------
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29777489 14 + 173848474 taaagtataatttt-------
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5580316 14 +   6154872 taaagtataatttt-------
i gorGor5.CYUI01015250v1          C 0 C 0
s canFam3.chr35                    26140304 21 +  26524999 taaaaaataaatttattttta
i canFam3.chr35                   I 198 C 0
e otoGar3.GL873742                  1961731 454 -   2232465 I
e cebCap1.NW_016107522v1             204874  6 +   3820305 I
e calJac3.chr6                    126580013  0 - 158406734 C
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M
e manLeu1.NW_012099655v1             204236  0 -    352859 C
e chlSab2.chr17                    28731834  0 -  71996105 C
e cerAty1.NW_012002711v1             219598  0 +    766320 C
e macNem1.NW_012011356v1            2455109  0 -   2996164 C
e macFas5.chr4                     29468580  0 - 170955103 C
e rheMac8.chr4                     29806277  0 + 172585720 C
e nomLeu3.chr1a_JH996256_1_random     11890  0 +     39990 C

a score=1365.000000
s hg38.chr6_GL000254v2_alt           566791 1 +   4827813 a
s panTro5.chr6                     29539220 1 + 175400573 a
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29777503 1 + 173848474 a
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5580330 1 +   6154872 a
i gorGor5.CYUI01015250v1          C 0 C 0
s cebCap1.NW_016107522v1             204880 1 +   3820305 a
i cebCap1.NW_016107522v1          I 6 C 0
s canFam3.chr35                    26140325 1 +  26524999 a
i canFam3.chr35                   C 0 C 0
e otoGar3.GL873742                  1961731 454 -   2232465 I
e calJac3.chr6                    126580013 0 - 158406734 C
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M
e manLeu1.NW_012099655v1             204236 0 -    352859 C
e chlSab2.chr17                    28731834 0 -  71996105 C
e cerAty1.NW_012002711v1             219598 0 +    766320 C
e macNem1.NW_012011356v1            2455109 0 -   2996164 C
e macFas5.chr4                     29468580 0 - 170955103 C
e rheMac8.chr4                     29806277 0 + 172585720 C
e nomLeu3.chr1a_JH996256_1_random     11890 0 +     39990 C

a score=30030.000000
s hg38.chr6_GL000254v2_alt           566792 5 +   4827813 aaaaa
s panTro5.chr6                     29539221 5 + 175400573 aaaaa
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29777504 5 + 173848474 aaaaa
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5580331 5 +   6154872 aaaaa
i gorGor5.CYUI01015250v1          C 0 C 0
s rheMac8.chr4                     29806277 5 + 172585720 AAAAA
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29468580 5 - 170955103 AAAAA
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2455109 5 -   2996164 AAAAA
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             219598 5 +    766320 AAAAA
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28731834 5 -  71996105 AAAAA
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             204236 5 -    352859 AAAAA
i manLeu1.NW_012099655v1          C 0 C 0
s cebCap1.NW_016107522v1             204881 5 +   3820305 aaaaA
i cebCap1.NW_016107522v1          C 0 I 1
s canFam3.chr35                    26140326 5 +  26524999 aaaaa
i canFam3.chr35                   C 0 I 8
e otoGar3.GL873742                  1961731 454 -   2232465 I
e calJac3.chr6                    126580013 0 - 158406734 C
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M
e nomLeu3.chr1a_JH996256_1_random     11890 0 +     39990 C

a score=2778.000000
s hg38.chr6_GL000254v2_alt           566797 2 +   4827813 -TG
s panTro5.chr6                     29539226 2 + 175400573 -TG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29777509 2 + 173848474 -TG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5580336 2 +   6154872 -TG
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     11890 2 +     39990 -TG
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29806282 2 + 172585720 -TG
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29468585 2 - 170955103 -TG
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2455114 2 -   2996164 -TG
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             219603 2 +    766320 -TG
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28731839 2 -  71996105 -TG
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             204241 2 -    352859 -TG
i manLeu1.NW_012099655v1          C 0 C 0
s cebCap1.NW_016107522v1             204887 1 +   3820305 -T-
i cebCap1.NW_016107522v1          I 1 C 0
s canFam3.chr35                    26140339 2 +  26524999 TT-
i canFam3.chr35                   I 8 C 0
e otoGar3.GL873742                  1961731 454 -   2232465 I
e calJac3.chr6                    126580013 0 - 158406734 C
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M

a score=139744.000000
s hg38.chr6_GL000254v2_alt           566799 19 +   4827813 Ccttttccataatcacaca
s panTro5.chr6                     29539228 19 + 175400573 Ccttttccataatcacacg
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29777511 19 + 173848474 Ccttttccataatcacacg
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5580338 19 +   6154872 Ccttttccataatcacaca
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     11892 19 +     39990 Ccttttccataatcacaca
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29806284 19 + 172585720 Ccttttccataatcacaca
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29468587 19 - 170955103 CCTTTTCCATAATCACACA
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2455116 19 -   2996164 Ccttttccataatcacaca
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             219605 19 +    766320 Cctttttcataatcacaca
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28731841 19 -  71996105 CCTTTTCCATAATCACACA
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             204243 19 -    352859 Ccttttccataatcacaca
i manLeu1.NW_012099655v1          C 0 C 0
s calJac3.chr6                    126580013 19 - 158406734 TCTTTTCCATAATCACACA
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             204888 19 +   3820305 CCTTTTCCATAATCACACA
i cebCap1.NW_016107522v1          C 0 C 0
s canFam3.chr35                    26140341 19 +  26524999 CCTTTTCCTAAATGAAGTC
i canFam3.chr35                   C 0 C 0
e otoGar3.GL873742                  1961731 454 -   2232465 I
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M

a score=1440757.000000
s hg38.chr6_GL000254v2_alt           566818 226 +   4827813 tatttaagaatggaattcattcactt---------ttgagtaaaaatta------ttcatctgggggattg--ttaaaatgagggctggattatcagtttcagagtaa----ttttagaaaagacacc-atgtttgaagaaagtttagctctctaagtcatggtttt--attctgagattctttgattcta---CTATTATGTATGGGTTTATGTAAATAA----TTA-CTAAGTATTCC------TTTTTTTTTTT-ACATAAG
s panTro5.chr6                     29539247 221 + 175400573 tatttaagaatggaattcattcactt---------ttgagtaaaaatta------ttcatctgggggattg--ttaaaatgagggctggattatcagtttcagagtaa----ttttagaa----------tgtttgaagaaagtttagctctctaagtcatggtttt--attctgagattctttgattcta---CTATTATGTATGGGTTTATGTAAATAAACAATTA-CTAAGTATTCC------TTTTTTTTTTT-ACATAAG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29777530 220 + 173848474 tatttaagaatggaattcattcactt---------ttgagtaaaaatta------ttcatctgggggattg--ttaaaatgagggctggattatcagtttcagagtaa----ttttagaa----------tgtttgaagaaagtttagctctctaagtcatggtttt--attctgagattctttgattcta---CTATTATGTATGGGTTTATGTAAATAAACAATTA-CTAAGTATTCC-------TTTTTTTTTT-ACATAAG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5580357 228 +   6154872 tatttaagaatggaattcattcactt---------ttgagtaaaaatta------ttcatctgggggattg--ttaaaatgagagctggattatcagtttcagagtaa----ttttagaaaagacacc-atgtttgaagaaagtttagctctctaagtaatggtttt--attctgagattc-ttgattcta---CTATTATGTATGGGTTTATGTAAATAAACAATTA-CTAAGTATTCC-------TTTTTTTTTT-ACATAAG
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     11911 229 +     39990 tatttaaggatggaattcatttactt---------ctgagtaaaaatta------ttcatctgggggattg--ttaaaatgatggctggattatcagtttcagagtta----ttttagaaaagacacc-atgtttgaagaaagcttagctctctaagtactggtttt--attctgagattctttgattcta---CTATTATGTATGGGTTTATGTAAATAAACAATTA-CTAAGTATTCC-------TTTTTTTTTT-ACATAGG
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29806303 238 + 172585720 tatttaagaatggaattcattcactt---------ttgagtaaaaattattcatattcatctaggggattg--ttaaaatgaggactggattataagtttca-agtta----ttttagaaaagacacc-atgtttgaagaaagtttagctctctaagtattggtttt--attctgagattatttgattcta---CTATTATGTATGGGTTTATGTAAATAAACAATTA-CTAAGTATTCC---TTTTTTTTTTTTTT-AAATAAG
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29468606 238 - 170955103 TATTTAAGAATGGAATTCATTCACTT---------TTGAGTAAAAATTATTCATATTCATCTAGGGGATTG--TTAAAATGAGGACTGGATTATAAGTTTCA-AGTTA----TTTTAGAAAAGACACC-ATGTTCGAAGAAAGTTTAGCTCTCTAAGTATTGGTTTT--ATTCTGAGATTATTTGATTCTA---CTATTATGTATGGGTTTATGTAAATAAACAATTA-CTAAGTATTCC---TTTTTTTTTTTTTT-AAATAAG
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2455135 240 -   2996164 tatttaagaatggaattcattcactt---------ttgagtaaaaattattcatattcatctaggggattg--ttaaaatgaggactggattataagtttca-agtta----ttttagaaaagacacc-atgtttgaagaaagtttagctctctaagtattggtttt--attctgagattatttgattcta---CTATTATGTATGGGTTTATGTAAATAAACAATTA-CTAAGTATTCC-TTTTTTTTTTTTTTTT-GCATAAG
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             219624 241 +    766320 tatttaagaatggaattcattcactt---------ttgagtaaaaattattcatattcatctagcggattg--ttaaaatgaggactggattataagtttca-agtta----ttttagaaaaggcacc-atgtttgaagaaagtttagctctctaagtagtggtttt--attctgagattatttgattcta---CTATTATGTATGGGTTTATGTAACTAAACAATTA-CTAAGTATTCCttttttttttttttttt-ACATAAG
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28731860 235 -  71996105 TATTTAAGAATGGAATTCATTCACTT---------TTGAGTAAAAATTATTCATGTTCATCTAGCGGATTG--TTAAAATGAGGACTGGATTATAAGTTTCA-AGTTA----TTTTAGAAAAGGCACT-ATGTTTGAAGAAAGTTTAGCTCTCTAAGTAGTGGTTTT--ATTCTGAGATTATTTGATTCTA---CTATTATGTATGGGTTTATGTAAATAAATAATTA-CTAAGTATTCC------TTTTTTTTTTT-ACATAAG
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             204262 241 -    352859 tatttaagaatggaattcattcactt---------ttgagtaaaaattattcatattcatctaggagattg--ttaaaatgaggactggattataagtttca-agtta----ttttagaaaagacacc-atgtttgaagaaagtttagctctctaagtactggtttt--attctgagattatttgattcta---CTATTATGTATGGGTTTATGTAAACAAACAATTA-CTAAGTATTCCttttttttttttttttt-GCATAAG
i manLeu1.NW_012099655v1          C 0 C 0
s calJac3.chr6                    126580032 222 - 158406734 TATTGAAGAACGGCAATTATTCACTT---------TTGAATAAAAATCA------Ttca-ctgggggattg--ttaaaatgaaggctggattatcagcttcagagtta-----tttagaaaagacacc-atgtttgaagaaagcttagctctctaagtattagtttt--attctgagattttttgattcca---tTATTATGTATGAGTTTAGGTAAATAAATAATTA-CTACGTATTTT-------------TTTTAACCTAAG
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             204907 219 +   3820305 TATTGAAGAATGGAAATCATCCACTT---------TTGCATAAAAATTA------TTCCTctgggggattg--ttaaaatgaaggctggattatcagcttcagagtta----ttttagaaaagacacc-atgtttgaagaaagcttag----ctaagtattagtttt--attctgatattctttgattcta---tTATTCTGCATGAGTTTAGGTAAGTAAATAATAA-CTAAGTATTTT-------------TTTT-ACCTAAG
i cebCap1.NW_016107522v1          C 0 C 0
s otoGar3.GL873742                  1962185 222 -   2232465 TACTTACAAGCTGATTTCATTCACTT---------TGGA-TGAAAACTA------TTCATCTAGGGGATTG--TTAAAATGGAGGCTGAATTAAAACTTTCAGA---A----TTTTAGAAAAGATGTA-ATGCTTAGAGAATGATTCAATCTTTAAGTATTGATTTA--AGTCTATAATTCTTTGATTCTC---TTATTGCATATGTGTTTATATAAATAAATAATTA-CAAAATACTCC----------TTTTATA-ACTTAAG
i otoGar3.GL873742                I 454 C 0
s canFam3.chr35                    26140360 237 +  26524999 --CTTACAAGCAGGTATGATTTTGTTGGTGGCCAGTAAAACTAAAATTG------TTAA--TAGAAAATTGAATTAAAATAGAAATTGAATTGTTAAT---AAAGAAATACCTTTTACTAGAGAAACTGAAGTCTGAA-----CttatttttttattttatttttttGAAGTCTGAATTTATCTTACATAAAATACATCATATAC---TTTTTAAAAAtatttatttatttatttattta------tttatttattt-atttaag
i canFam3.chr35                   C 0 I 178
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M

a score=874791.000000
s hg38.chr6_GL000254v2_alt           567044 140 +   4827813 GCCAGTGCAATCATGCGTGATTTTATTGGTGACCAGTTAAAATGAAACTGTTAATTAATGAAAAAA-ATCCTTTTTACTAGAAAA---ACCTGTGAATCTGTGTTACAGAAAACGAGTTATGTATAATATTCATTTTTTTA--ACC
s panTro5.chr6                     29539468 140 + 175400573 GCCAATGCAATCATGTGTGATTTTATTGGTGACCAGTTAAAATGAAACTGTTAATTAATGAAAAAA-ATCCTTTTTACTAGAAAA---ACCTGTGAACCTATGTTACAGAAAACGAGTTATGTATAATATTCATTTTTTTA--ACC
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29777750 140 + 173848474 GCCAATGCAATCATGCGTGATTTTATTGGTGACCAGTTAAAATGAAACTGTTAATTAATGAAAAAA-ATCCTTTTTACTAGAAAA---ACCTGTGAACCTATGTTACAGAAAACGAGTTATGTATAATATTCATTTTTTTA--ACC
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5580585 140 +   6154872 GCCAATGCAATCATGCGTGATTTTATTGGTGACCAGTTAAAATGAAACTGTTAATTAATGAAAAAA-ATCCTTTTTACTAGAAAA---ACCTGTGAACCTATGTTACAGAAAACGAGTTATGTATAATATTCATTTTTTTA--ACC
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     12140 139 +     39990 GCCAATGCAATCATGCATGATTTTATTGGTGACCAGTTAAAATGAAATTGTTAATTAATG-AAAAA-ATCGTTTTTACCAGAAAA---ACCTGTGAACTTTTATTACAGAAAACAAGTTACGTATAATATTCATTTTTTTA--ACC
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29806541 136 + 172585720 GCCAGTGCAATCATGCATGATTTTATTGGTGACCAGTTAAACTGAAATTGTTAATTAATG-AAAAA-ATAGTTTTTACTAGAAAA---ACCTGTGAACTTATATTACAGAAAAC--GTTATGTATAATATTCA-TTTTTTA--ACC
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29468844 136 - 170955103 GCCAGTGCAATCATGCATGATTTTACTGGTGACCAGTTAAACTGAAATTGTTAATTAATG-AAAAA-ATAGTTTTTACTAGAAAA---ACCTGTGAACTTACATTACAGAAAAC--GTTATGTATAATATTCA-TTTTTTA--ACC
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2455375 136 -   2996164 GCCAGTGCAATCATGCATGATTTTATTGGTGACCAGTTAAACTGAAATTGTTAATTAATG-AAAAA-ATAGTTTTTACTAGAAAA---ACCTGTGAACTTACATTACAGAAAAC--GTTATGTATAATATTCA-TTTTTTA--ACC
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             219865 135 +    766320 GCCAGTGCAATCATGCATGATTTTATTGGTGACCAGTTAAACTGAAATTGTTAATTAATG-AAAAA-ATAGTTTTTACTAG-AAA---ACCTGTGAACTTACATTACAGAAAAC--GTTATGTATAATATTCA-TTTTTTA--ACC
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28732095 136 -  71996105 ACCAATGCAGTCATGCATGATTTTATTGGTGACCAGTTAAACTGAAATTGTTAATTAATG-AAAAA-ATAGTTTTTACTAGAAAA---ACCTGTGAACTTATATTATAGAAAAC--ATTATGTATAATATTCA-TCTTTTA--ACC
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             204503 137 -    352859 GCCAATGCAATCATGCATGATTTTATTGGTGACCAGTTAAACTGAAATGGTTAATTAATG-AAAAATATAGTTTTTACTAGAAAA---ACCTGTGAATTTATATTACAGAAAAC--GTTATGTATAATATTCA-TTTTTTA--ACC
i manLeu1.NW_012099655v1          C 0 C 0
s calJac3.chr6                    126580254 139 - 158406734 GACAATGCAATCGTGCATGATTTTATTGATGACCAGTTAAACTGAAATTGTTAGTTAATG-AAAAA-ATACTTTTTACTAGAAAA---ACCTACGAACTTAT-TTACAGAAAACAAGTTACGTATAATATGCA-TTTTTTCCTACC
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             205126 138 +   3820305 GACAATGCAATCATGCATGATTTTATCGGTGACCAGTTAAAC-AAAATTGTTAGTTAATG-AAAAA-ATACTTTTTACTAGAAAA---ACCTGTGAACTTAT-TTACAGAAAACAAGTTATGTATAATATGCA-TTTTTTCCTACC
i cebCap1.NW_016107522v1          C 0 C 0
s otoGar3.GL873742                  1962407 141 -   2232465 ACCCATGAAAGAATGCATAATTTCA-TGGTGACCAGTCAAACTGAAAATGTTAATCAGTT--AAAA-ATAGTTTTTACCAGAAAAAACAACTTTAAATTTATACTACAGAAAGCAAATTATCTACACTATTCA-TTTTTCCCTACC
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                    26140597 178 +  26524999 I
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M

a score=3197374.000000
s hg38.chr6_GL000254v2_alt           567184 410 +   4827813 TGAAATGCATCGA--CTACAAGAGTTAGCTAAACCAAGATAATAATTAACTACTTCCCACTGAGGCAATTCCCTGAGGGAGAGGTCCATGAAATCCCCTGCTTTGAACTCATAGTTTTTATCTGAAACACCAACTTTCCTGCACAGGATTTTTGTCCCCAGTGCCTGGACAGCACTGGCTTCATTT-CAAATACCCCTTAGTTAATAGGAAATTTAAATGTCCCTGGGCAGTTACATCCTGTTTGGTCCTATATAAAAGCGTTTCAGTCCTTTCCTTACATGGAAATTTCACTGACTGAAACACCAGCTTGATTCTAGAACAAAGATGCTCAGTCTCAGGATCAATTGAGATTTGT---TTCTACCGA--GAGATCCACTCTGGTGAGTAAAACTTCTTCAAATTTTATGGAatttat
s panTro5.chr6                     29539608 410 + 175400573 TGAAATGCATCGA--CTGCAAGAGTTAGCTAAACCAAGATAATAATTAACTACTTTCCACTGAGGCAATTCCTTGAGGGAGAGGTCCATGAAATCCCCTGCTTTGAACTCATAGTTTTTATCTGAAACACCAACTTTCCTGCACAGGATTTTTGTCCCCAGTGCCTGGACAGCACTAGCTTCATTT-CAAATACCCCTTAGTTAATAGGAAATTTAAATGTCCCTGGGCAGTTACATCCTGTTTGGTCCTATATAAAAGCGTTTCAGTCCTTTCCTTACATGGAAATTTCACAGACTGAAACACCAGCTTGATTCTAGAACAAAGATGCTCAGTCTCAGGATCAATTGAGATTTGT---TTCTACCGA--GAGATCCACTCTGGTGAGTAAAACTTGTTCAAATTTTATGGAatttat
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29777890 410 + 173848474 TGAAATGCATCGA--CTGCAAGAGTTAGCTAAACCAAGATAATAATTAACTACTTTCCACTGAGGCAATTCCTTGAGGGAGAGGTCCATGAAATCCCCTGCTTTGAACTCATAGTTTTTATCTGAAACACCAACTTTCCTGCACAGGATTTTTGTCCCCAGTGCCTGGACAGCACTGGCTTCATTT-CAAATACCCCTTAGTTAATAGGAAATTTAAATGTCCCTGGGCAGTTACATCCTGTTTGGTCCTATATAAAAGCGTTTCAGTCCTTTCCTTACATGGAAATTTCACAGACTGAAACACCAGCTTGATTCTAGAACAAAGATGCTCAGTCTCAGGATCAATTGAGATTTGT---TTCTACCGA--GAGATCCACTCTGGTGAGTAAAACTTGTTCAAATTTTATGGAatttat
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5580725 410 +   6154872 TGAAATGCATCGA--CTACAAGAGTTAGCTAAGCCAAGATAATAATTAACTACTTTCCACTGAGGCAATTCCTTGAGGGAGAGGTCCATGAAATCCCCTGCTTTGAACTCATAGTTTTTATCTGAAACACCAACTTTCCTGCACAGGATTTTTGTCCCCAGTGCCTGGACAGCACTGGCTTTGTTT-CAAATACCCCTTAGTTAATAGGAAATTTAAATGTCCCTGGGCAGTTACATCCTGTTTGGTCCTATATAAAAGCATTTCAGTCCTTTCCTTACATGGAAATTTCACAGACTGAAACACCAGCTTGATTCTAGAACAAAGATGCTCAGTCTCAGGATCAATTGAGATTTGT---TTCTACCGA--GAGATCCACTCTGGTGAGTAAAACTTCTTCAAATTTTATGGAATTTAT
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     12279 410 +     39990 TGAAATGCATCGA--CTACAAGAGTTAGCTAAACCAAGATAATAGTTAACTACTTTCCACTGAGGCAATTCCTTGAGGGAGAGATCCGTTAAATCCCCTGCTTTGAACTCATAGTGGTTATCTGAAACCCCAACTTTCCTGCACAGGATTTTTGTCCCTAGTGCCTGGACAGCACTGGCTTTATTT-CAAATACCACTTAGCTAATAGGAAATTTAAATGTCCCTGGGCAGTTACATCCTGTTTGGTCCTATATAAAAGCATTTCAGTCCTTTCCTTACATGGAAATTTCACGGACTGAAAAACCAGCTTGATTCTAGAACAAAGATGCTCAGTCTCAGGATCAACTGAGATTTGT---TTCTACCAA--GAGATCCACTCTGGTGAGTAAAACTTCTCCAAATTTTATGGAatttat
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29806677 410 + 172585720 TGAAATGCATCGA--CTACAAGAGTTAGCTAAACCAAGATAGTAATTAACTACTTTCCACTGAGGCAATTCCTTGAGGGAGAGGTCCATGAAATCCCCTGCTTTGAACTCATAGTATTTATCTGAAACACCAACTTCCCTGCACAGGATGTTTGTCCCTAGTGCCTGGACAGCACTGGCTTTATTT-CAAATACCACTTAGTTAATAGGAAATTTAAATGTCCCTGGGCAGTTACATCCTGTTTGGTCCTATATAAAAGCATTTCAGTCCTTTCCCTACATGGAAATTTCACGGACTGAAATAACAGCTTGATTCTAGAACAAAGATGCTCAGTCTCAGGATCAACTGAGATTTGT---TTCTACTAA--GAAATCCACTCTGGTGAGTAAAACTTCTCCGAATTTTATGAAATTTAT
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29468980 410 - 170955103 TGAAATGCATCGA--CTACAAGAGTTAGCTAAACCAAGATAGTAATTAACTACTTTCCACTGAGGCAATTCCTTGAGGGAGAGGTCCATGAAATCCCCTGCTTTGAACTCATAGTATTTATCTGAAACACCAACTTCCCTGCACAGGATGTTTGTCCCTAGTGCCTGGACAGCACTGGCTTTATTT-CAAATACCACTTAGTTAATAGGAAATTTAAATGTCCCTGGGCAGTTACATCCTGTTTGGTCCTATATAAAAGCATTTCAGTCCTTTCCCTACATGGAAATTTCACGGACTGAAATAACAGCTTGATTCTAGAACAAAGATGCTCAGTCTCAGGATCAACTGAGATTTGT---TTCTACTAA--GAAATCCACTCTGGTGAGTAAAACTTCTCCGAATTTTATGAAATTTAT
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2455511 410 -   2996164 TGAAATGCATCGA--CTACAAGAGTTAGCTAAACCAAGATAGTAATTAACTACTTTCCACTGAGGCAATTCCTTGAGGGAGAGGTCCATGAAATCCCCTGCTTTGAACTCATAGTATTTACCTGAAACACCAACTTCCCTGCACAGGATGTTTGTCCCTAGTGCCTGGACAGCACTGGCTTTATTT-CAAATACCACTTAGTTAATAGGAAATTTAAATGTCCCTGGGCAGTTACATCCTGTTTGGTCCTATATAAAAGCATTTCAGTCCTTTCCCTACATGGAAATTTCACGGACTGAAATAACAGCTTGATTCTAGAACAAAGATGCTCAGTCTCAGGATCAACTGAGATTTGT---TTCTACTAA--GAAATCCACTCTGGTGAGTAAAACTTCTCCGAATTTTATGAAATTTAT
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             220000 410 +    766320 TGAAATGCATTGA--CTACAAGAGTTAGCTAAACCAAGATAGTAATTAACTACTTTCCACTGAGGCAATTCCTTGAGGGAGAGGTCCATGAAATCCCCTGCTTTGAACTCATAGTATTTATCTGAAACACCAACTTCCCTGCACAGGATATTTGTCCCTAGTGCCTGGACAGCACTGGCTTTATTT-CAAATACCACTTAGCTAATAGGAAATTTAAATGTCCCTGGGCAGTTACATCCTGTTTGGTCCTATATAAAAGCATTTCAGTCCTTTCCCTACATGGAAATTTCACGGACTGAAATAACAGCTTGATTCTAGAACAAAGACGCTCAGTCTCAGGATCAACTGAGATTTGT---TTCTACTAA--GAAATCCACTCTGGTGAGTAAAACTTCTCTGAATTTTATGAAATTTAT
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28732231 410 -  71996105 TGAAATGCATCGA--CTACAAGAGTTAACTAAACCAAGATAGTAATTAACTACTTTTCACTGAGGCAATTCCTTGAGGGAGAGGTCCATGAAATCCCCTGCTTTAAACTCATAGTATTTATCTAAAACACCAACTTCCCTGCACAGGATTTTTGTCCCTAGTGCCTGGACAGCACTGGCTTTATTT-CAAATACCACTTAGTTAATAGGAAATTTAGATGTCCCTGGGCAGTTACATCCTGTTTGGTCCTATATAAAAGCATTTCAGTCCTTTCCCTACAAGGAAATTTCACGGACTGAAATAACAGCTTGATTCTAGAACAAAGATGCTCAGTCTCAGGATCAACTGAGATTTGT---TTCTACTAA--GAAATCCACTCTGGTGAGTAAAACTTCTCCGAATTTTATGAAATTTAT
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             204640 410 -    352859 TGAAATGCATCGA--CTACAACAGTTAGCTAAACCAAGATAGTAATTAACTACTTTTCACTGAGGCAATTCCTTGAGTGAGAGGTCCATGAAATCCCCCGCTTTGAACTCATAGTATTTATCTGAAACACCAACTTCCCTGCACAGGATGTTTGTCCCTAGTGCCTGGACAGCACTGGCTTTATTT-CAAATACCACTTAGTTAATAGGAAATTTAGATGTCCCTGGGCAGTTACATCCTGTTTGGTCCTATATAAAAGCATTTCAGTCCTTTCCCTACATGGAAATTTCATGGACTAAAATAACAGCTTGATTCTAGAACAAAGATGCTCAGTCTCAGGATCAACTGAGATTTGT---TTCTACTAA--GAAATCCATTCTGGTGAGTAAAACTTCTCTGAATTTTATGAAATTTAT
i manLeu1.NW_012099655v1          C 0 C 0
s calJac3.chr6                    126580393 412 - 158406734 CGGAATGCATAGA--CTACAAGAGTTAGCTAAACTGAGATAATAATTAACTACTTCCTACTGAGGCAGTTCCTTGAAGGAGAGGTCCATGAAGTCCCCTGCTTTGCACTCAGAGTGTTTATCTGAAACACCAACTTCCCTGAACAGGATTTTTGTCCCTGGTGCCTGGACAGCACGGACTTTATTT-CAAGTACCACTTACCTAATGGGAAATGGAAATGTCCCTGGGCAGTTGCATCCTGTTTGGTCC-ATATAAAAGGATTTCAGTCCTTTTCTTACATGAAAACTTCATGTACTGAAACACCAGCTTGATTCTGGAACAAAAAGGCTCAGTCTCAGGATCAACTGAGATTCATAGGATCTACCGA--GAGATCCATTCTGGAGAGTAAAACTTCTTCATATTTTATGGAATCTAT
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             205264 405 +   3820305 TGGAATGCATAGA--CTGCAAGAGTTAGCTAAACCGAGATAATAATTAACTACCTTCCACTGAGGCAGTTCTTTGAAGGAGAGGCCCATGAAGTTCCCTGCTTTGAACTCATTGTGTTTACCTGAAACACCAACTTCCCTGCACAGGATTTTTGTCCCTGGTGCCTGGACAGCACCGGCTTTATTT-CAAGTACCACTTACTTAATGGGAAATGGAAATGTCCCT-GGCAGTTCCATCCTGTTTGGTCC-ATACAAAACCATTTCAGTCCTTTCCTTACATGAAAACTTCATGGACTGAAATACCAGCTTGATTCTGGAACAAAGAGGCTCAGTCTCAGGATCAACTGAGATTTGT---TTCTACCAA--GAGACCCACTCTGGAGAGTAAAA---CTCCAAATTTTATGGAATTTAT
i cebCap1.NW_016107522v1          C 0 C 0
s otoGar3.GL873742                  1962548 385 -   2232465 TGGAATGTATAGA--CCATAAGATTCAGTTAACCCAAAATAACAATTAACTACTTTCCACTGAGGCAATTCCTTGAGGGAAAACTCTATGAAGTCCCCTGCTTTGAACTCATAGTGTTTACCTTACACACCAACTTTGCTGAAGAGG--TTTGGTCCCTAGTGCCTGGGCATCACTGGCTTCATTT-CAGGTATCACTGACTTAATAGGAAATTTAAATGTCCCTGGGTCTATGCTCCCTGTTCAATCTTGTATGAAAGCTTCTCAGTCC-TTCGTCACATGAAAATTTCACAGACTTGG-------------CCTAGAACAAAGATTCTCAGTCTC-----------TAATTTGT---TTCTGCTGACTGAGATCAACCAAGGTAAGTGAAACTTCTCAAGATTTTATGGAGTTTAT
i otoGar3.GL873742                C 0 C 0
s canFam3.chr35                    26140775 399 +  26524999 TGGAATGCACTGACTCTATAAGATCCAGTTAAACTAAGATGGCAATTAATTACTTTCCACTGAGGCAATTCCTTGGGGGACAGATCCACCAAGCCCCATGCTCTGAACTCA--GTGTTT-CCTGATACCCCAACCACCCTGAAGAGA--CTTGCTCCCTCGTGCCTGGGAAGCACTGGCTGCATTTGGGGGTGTTGTAGGCTTTGTGGGAGGTTAAAATGTCCCTGTACCTGTGCCCCCTGTTCAACCTTGTATGAACATAGCTCAGTTCTTTCCTTGCCTGAAAATTT------CCAAGCTACCAGCTCGACTCTGAAACAAAAATGCTCAATCTTCGGATTAA-TGAGATTTGC---TCCTACTAA--GAG--CAGCTCTGGTGAGTGACACTTGTCCATATTTTATGAAATTTAT
i canFam3.chr35                   I 178 I 1061
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M

a score=878291.000000
s hg38.chr6_GL000254v2_alt           567594 134 +   4827813 ccaacatttatgtagcacctgcttagtgccagcgactatgcgagtcttcaaagttataactctaaataagataCATAATTTCTCACTCCTTAACTAAGAACAGTTTAAATAAGCTGCGATATCTATGCAAAT----AA--
s panTro5.chr6                     29540018 134 + 175400573 ccaacatttatgtagcacctgcttagtgccagtgactatgcgagtcttcaaagttataactctaaataagataTATAATTTCTCACTCCTTAACTAAGAACAGTTTAAATAAGCTGGGATATCTATGCAAAT----AA--
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29778300 134 + 173848474 ccaacatttatgtagcacctgcttagtgccagtgactatgcgagtcttcaaagttataactctaaataagataTATAATTTCTCACTCCTTAACTAAGAACAGTTTAAATAAGCTGGGATATCTATGCAAAT----AA--
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5581135 134 +   6154872 CCAACATTTGTGTAGCACCTGCTTAGTGCCAGTGACTATGTGAGTCTTCAAAGTTATAACTCTAAATAAGATATATAATTTCTCACTCCTTAACTAAGAACAGTTTAAATAAGCTGGGATATCTATGCAAAT----AA--
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     12689 134 +     39990 ccaacatttatgtagcacctgcttagtgccagtgactatgcgagtcttcaaagttataactctaaataagataTATAATTTCTCACTCCTTAACTAAGAACAGTTTAAATAAGCTGGGAAATTTATGCAAAT----AA--
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29807087 131 + 172585720 CCAGAATTTATGTAGCATCTGCTTAGTGCCAGTGACTATGCGAGTCATCAAAATTATAACTGTAAATAAGGTATACAATTTCTCATTCCTTAACTAAGAACAG-TTAAATAAGCTGGAAAATCTATGCAAAT--------
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29469390 131 - 170955103 CCAGAATTTATGTAGCATCTGCTTAGTGCCAGTGACTATGCGAGTCATCAAAATTATAACTGTAAATAAGGTATACAATTTCTCGTTCCTTAACTAAGAACAG-TTAAATAAGCTGGAAAATCTATGCAAAT--------
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2455921 131 -   2996164 CCAGAATTTATGTAGCATCTGCTTAGTGCCAGTGACTATGCGAGTCATCAAAATTATAACTGTAAATAAGGCATACAATTTCTCATTCCTTAACTAAGAACAG-TTAAATAAGCTGGAAAATCTATGCAAAT--------
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             220410 133 +    766320 CCAGAATTTATGTAGCATCTGCTTAGTGCCAGTGACTATGCAAGTCATCAAAATTATAACTGTAAATAAGGTATATAATTTCTCATTCCTTAACTAAGAACAG-TTAAATAAGCTGGAAAATCTATGCAAATAA------
i cerAty1.NW_012002711v1          C 0 I 7
s chlSab2.chr17                    28732641 131 -  71996105 CCAGAATTTATGTAGCATCTGCTTAGTGCCAGTGACTATGCGAGTCATCAAAATTATAACTGTAAATAAGGTATATAATTTCTCATTCCTTAACTAAGAACAG-TTAAATAAGCTGGAAAATCTATGCAAAT--------
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             205050 133 -    352859 CCAGAATTTATGTAGCATCTGCTTAATGCCAGTGACTATGCGAGTCATCAAAATTATAACTGTAAATAAGGTATATAATTTCTCATTCCTTAACTAAGAACAG-TTAAATAAGCTGGAAAATCTATGCAAAT--AA----
i manLeu1.NW_012099655v1          C 0 C 0
s calJac3.chr6                    126580805 132 - 158406734 CCAACATTTATGTAGCACCTGCTTAGGGCCAGTGACTATGTGAGTCATCAAAGTTATAACTCTAAATAAGATATGTAATTTCTCACACCTTAACTAAGCATAGTTTAAATCAGCTGGGAAATCTATGCAAAT--------
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             205669 132 +   3820305 CCAACATTTATGTAGCACCTGCTTAGTGCCAGTGATTATGTGAGTCATCAAAGTTATAACTCTAAATAAGATATGTAATTTCTCACACCTTAACTAAGCATAGTTTAAATAAGCTGGGAAATCTATGCAAAT--------
i cebCap1.NW_016107522v1          C 0 C 0
s otoGar3.GL873742                  1962933 128 -   2232465 CCAACATTTATAGA------GTTTATTGCCAGTGACTGTGTGAATTGTCATAGGTACAATTCTAATGAAGATATATTATTTCCCACTCCCCAATTAAGAATAGTTTAAATAGGATAGGAAACTTATGCAAAT------GA
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                    26141174 1061 +  26524999 I
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M

a score=2100.000000
s hg38.chr6_GL000254v2_alt           567728 1 +   4827813 G
s panTro5.chr6                     29540152 1 + 175400573 G
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29778434 1 + 173848474 G
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5581269 1 +   6154872 G
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     12823 1 +     39990 G
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s manLeu1.NW_012099655v1             205183 1 -    352859 G
i manLeu1.NW_012099655v1          C 0 I 6
s otoGar3.GL873742                  1963061 1 -   2232465 G
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                    26141174 1061 +  26524999 I
e cebCap1.NW_016107522v1             205801 0 +   3820305 C
e calJac3.chr6                    126580937 0 - 158406734 C
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M
e chlSab2.chr17                    28732772 0 -  71996105 C
e cerAty1.NW_012002711v1             220543 7 +    766320 I
e macNem1.NW_012011356v1            2456052 0 -   2996164 C
e macFas5.chr4                     29469521 0 - 170955103 C
e rheMac8.chr4                     29807218 0 + 172585720 C

a score=13069.000000
s hg38.chr6_GL000254v2_alt           567729 36 +   4827813 GTAGTATAAATTATAAAAAAGTATATAAAGCATAAA
s panTro5.chr6                     29540153 36 + 175400573 TTAGTATAAATTATAAAAAAGTATATAAAGCATAAA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29778435 36 + 173848474 TTAGTATAAATTATAAAAAAGTATATAAAGCATAAA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5581270 36 +   6154872 TTAGTATAAATTATaaaaaagtatataaagcataaa
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     12824  6 +     39990 T------------------------------ATAAG
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29807218  9 + 172585720 ---------------------------AAGTGTAAT
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29469521  9 - 170955103 ---------------------------AAGTGTAAT
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2456052  9 -   2996164 ---------------------------AAGTGTAAT
i macNem1.NW_012011356v1          C 0 C 0
s chlSab2.chr17                    28732772  9 -  71996105 ---------------------------AAGTGTAAT
i chlSab2.chr17                   C 0 C 0
s calJac3.chr6                    126580937  9 - 158406734 ---------------------------AAATATAAT
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             205801  9 +   3820305 ---------------------------AAATATAAT
i cebCap1.NW_016107522v1          C 0 C 0
e canFam3.chr35                    26141174 1061 +  26524999 I
e otoGar3.GL873742                  1963062  0 -   2232465 C
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M
e manLeu1.NW_012099655v1             205184  6 -    352859 I
e cerAty1.NW_012002711v1             220543  7 +    766320 I

a score=493745.000000
s hg38.chr6_GL000254v2_alt           567765 74 +   4827813 AAAGTTAGTAAAAATTATAAGGAATCTTAAATGAATGCAATCTGGGCTCC------------AAAGAGTG-ACAATTCTTCTTGGGT
s panTro5.chr6                     29540189 74 + 175400573 AAAGTTAGTATAAATTATAAGGAATCTTAAATGAATGCAATCTGGGCTCC------------AAAGAGTG-ACAATTCTTCTTGGGT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29778471 74 + 173848474 AAAGTTAGTATAAATTATAAGGAATCTTAAATGAATGCAATCTGGGCTCC------------AAAGAGTG-ACAATTCTTCTTGGGT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5581306 74 +   6154872 aaagttagtataaattataaagaatCTTAAATGAATGCAATCTGGGCTCC------------AAAGAGTG-ACAATTCTTCTTGGGT
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     12830 74 +     39990 GAAGTTAGTATAAATTATAAGGAATCTTAAATGAATGCAATCTGGGCTCC------------AAAGAGTG-ACAATTCTTCTTGGGT
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29807227 75 + 172585720 AAAGTTAGTATAAATTATAAGGAATCTGAAATGAATGCAATCTGGGCTCC------------AAACAGTGTTCAATTCTTCTTGGGT
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29469530 75 - 170955103 AAAGTTAGTATAAATTATAAGGAATCTGAAATGAATGCAATCTGGGCTCC------------AAACAGTGTTCAATTCTTCTTGGGT
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2456061 75 -   2996164 AAAGTTAGTATAAATTATAAGGAATCTGAAATGAATGCAATCTGGGCTCC------------AAACAGTGTTCAATTCTTCTTGGGT
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             220550 87 +    766320 AAAGTTAGTATAAATAATAAGGAATCTAAAATGAATGCAGTCTGGGCTCCaaacagtgttcaaaacagtgttcaaTTCTTCTTGGGT
i cerAty1.NW_012002711v1          I 7 C 0
s chlSab2.chr17                    28732781 87 -  71996105 AAAGTTAGTATAAATTATAAGGAATCTGAAATGAATGCAGTCTGGGCTCCaaacagtgttcaaaacagtgttcaaTTCTTCTTGGGT
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             205190 75 -    352859 AAAGTTAGTATAAATTATAAGGAATCTGAAATGAATGCAATCTGGGCTCC------------AAACAGTGTTCAATTCTTCTTGGGT
i manLeu1.NW_012099655v1          I 6 M 155
s calJac3.chr6                    126580946 74 - 158406734 AAAGTTAGTATAAATTATGAAGAATCTT-AATGAATGCAATCTGGGCTCC------------AAAGAGTGATTAGTTCTTCTTGGGT
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             205810 74 +   3820305 AAAGTTAGTATAAATTATAAAGAATCTT-AATGAATGCAATCTGAGCTCC------------AAAGAGTGATCAATTCTTCTTGAGT
i cebCap1.NW_016107522v1          C 0 C 0
s otoGar3.GL873742                  1963062 69 -   2232465 -----TACAATAAATTATAAGAAATCTCAATTGAG-GCAATCTGGGCTTC------------AAAGAGTCCCCAATTCTACTTGGGT
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                    26141174 1061 +  26524999 I
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M

a score=182019.000000
s hg38.chr6_GL000254v2_alt           567839 31 +   4827813 CGACAGTTAAACTCAGGTGAATTATAAATGG
s panTro5.chr6                     29540263 31 + 175400573 CGACAGTTAAACTCAGGTGAATTATAAATGG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29778545 31 + 173848474 CGACAGTTAAACTCAGGTGAATTATAAATGG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5581380 31 +   6154872 CGACAGTTAAACTCAGGTGAATTATAAATGG
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     12904 31 +     39990 TGACAGTTAAACTCAGTTGAATTATAAATGG
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29807302 31 + 172585720 CGACAGTTAAACTCAGGTGAATTTTAGATGG
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29469605 31 - 170955103 CGACAGTTAAACTCAGGTGAATTTTAGATGG
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2456136 31 -   2996164 CGACAGTTAAACTCAGGTGAATTTTAGATGG
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             220637 31 +    766320 CGACAGTTAAACTCAGGTGAATTTTAGATGG
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28732868 31 -  71996105 CAACAGTTAAACTCAGGTGAATTTTAGATAG
i chlSab2.chr17                   C 0 C 0
s calJac3.chr6                    126581020 31 - 158406734 TGGCAGTTAAACTCAGGTGAATTTTAAATGA
i calJac3.chr6                    C 0 I 316
s cebCap1.NW_016107522v1             205884 31 +   3820305 CAACAGTTAAACTCAGATGAATTTTAAATGA
i cebCap1.NW_016107522v1          C 0 I 324
s otoGar3.GL873742                  1963131 30 -   2232465 TGATAGTTAAA-TCAGGAGAATTTCAATTGA
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                    26141174 1061 +  26524999 I
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M
e manLeu1.NW_012099655v1             205265 155 -    352859 M

a score=394703.000000
s hg38.chr6_GL000254v2_alt           567870 58 +   4827813 AAAGAGACAATGTAGCTGTGTTAAAAGATAGTTAAGTATTTGCCAAACAAATGAGGGG
s panTro5.chr6                     29540294 58 + 175400573 AAAGAGACAATGTAGCTGTGTTAAAAGATAGTTAAGTATTTGCCAAACAAATGAGGGG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29778576 58 + 173848474 AAAGAGACAATGTAGCTGTGTTAAAAGATAGTTAAGTATTTGCCAAACAAATGAGGGG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5581411 58 +   6154872 AAAGAGACAATGTAGCTGTGTTAAAAGATAGTTAAGTATTTGCGAAACAAATGAGAGG
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     12935 58 +     39990 AAAGAGACAATGTAGCTGTGTTAAAAGATAGTTAAGTATTTGCCAAACCAATGAGGGG
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29807333 58 + 172585720 AAAGAGACAATGTAGCTGTGTTAAAAGATAGTTAAGTATTTGCCAAACAAATGAGGGG
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29469636 58 - 170955103 AAAGAGACAATGTAGCTGTGTTAAAAGATAGTTAAGTATTTGCCAAACAAATGAGGGG
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2456167 58 -   2996164 AAAGAGACAATGTAGCTGTGTTAAAAGATAGTTAAGTATTTGCCAAACAAATGAGGGG
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             220668 58 +    766320 AAAGAGACAATGTAGCTGTGTCAAAAGATAGTTAAATATTTGCCAAACAAATGAGGGG
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28732899 58 -  71996105 AAAGAGACAATGTAGCTGTGTCAAAAGATAGTTAAATATTTGCCAAACAAATGAGGGG
i chlSab2.chr17                   C 0 C 0
s calJac3.chr6                    126581367 58 - 158406734 AAAGAGACAATGTAGCTGTGTTAAAAGATAGTTAAATATTTGCCAAACAAATGAGGGG
i calJac3.chr6                    I 316 C 0
s cebCap1.NW_016107522v1             206239 58 +   3820305 AAAGAGACAATGTAGCTGTGTTAAAAGATAGTTAAATATTTGCCAAACAAATGAGGGG
i cebCap1.NW_016107522v1          I 324 C 0
s otoGar3.GL873742                  1963161 58 -   2232465 AAAGAAACAATGTAACTGCATTGAAAGATAATTAAATATTTGCCCAGCAAATGAAGAG
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                    26141174 1061 +  26524999 I
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M
e manLeu1.NW_012099655v1             205265 155 -    352859 M

a score=23871.000000
s hg38.chr6_GL000254v2_alt           567928 5 +   4827813 AGAtt
s panTro5.chr6                     29540352 5 + 175400573 AGAtt
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29778634 5 + 173848474 AGATt
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5581469 5 +   6154872 AGACt
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     12993 5 +     39990 GGAtt
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29807391 5 + 172585720 AGATT
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29469694 5 - 170955103 AGATT
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2456225 5 -   2996164 AGATT
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             220726 5 +    766320 AGATT
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28732957 5 -  71996105 AGATT
i chlSab2.chr17                   C 0 C 0
s cebCap1.NW_016107522v1             206297 5 +   3820305 GGATT
i cebCap1.NW_016107522v1          C 0 I 5
s otoGar3.GL873742                  1963219 5 -   2232465 GGAGT
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                    26141174 1061 +  26524999 I
e calJac3.chr6                    126581425 0 - 158406734 C
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M
e manLeu1.NW_012099655v1             205265 155 -    352859 M

a score=1560.000000
s hg38.chr6_GL000254v2_alt           567933 1 +   4827813 t
s panTro5.chr6                     29540357 1 + 175400573 t
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29778639 1 + 173848474 t
i panPan2.chr6                    C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     12998 1 +     39990 t
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29807396 1 + 172585720 C
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29469699 1 - 170955103 C
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2456230 1 -   2996164 T
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             220731 1 +    766320 T
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28732962 1 -  71996105 T
i chlSab2.chr17                   C 0 C 0
s otoGar3.GL873742                  1963224 1 -   2232465 C
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                    26141174 1061 +  26524999 I
e cebCap1.NW_016107522v1             206302 5 +   3820305 I
e calJac3.chr6                    126581425 0 - 158406734 C
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M
e manLeu1.NW_012099655v1             205265 155 -    352859 M
e gorGor5.CYUI01015250v1            5581474 0 +   6154872 C

a score=526132.000000
s hg38.chr6_GL000254v2_alt           567934 173 +   4827813 tt---tttctttttttttcttttttttttcttttttttttttttttttgagacgagtctcgctctgtcacccaggctggagtgcagtggcgcgaccttggctcactgtaacttccgcctcctgggttcaaacaattctcctgcctcagcctccctagtagctgggattacaggtgc
s panTro5.chr6                     29540358 169 + 175400573 tt---tttctttctttttctttttctttt----tttttttctttttttgagacgagtctcgctctgtcacccaggctggagtgcaatggcgcgaccttggctcactgtaacctccgcctcctgggttcaaacaattctcctgcctcagcctccctagtagctgggattacaggtgc
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29778640 167 + 173848474 tt---tttctttctttttctttttctt------ttttttttcttttttgagacgagtctcgctctgtcacccaggctggagtgcaatggcgcgaccttggctcactgtaacctccgcctcctgggttcaaacaattctcctgcctcagcctccctagtagctgggattacaggtgc
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5581474 143 +   6154872 ---------------------------------ttttttcttttttttgagacgagtctcgctctgtcacccaggctggagtgcaatggcgcgatcttggctcactgtaacctccgcctcctgggttcaaacaattctcctgcctcagcctccctagtagctgggattacaggggc
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     12999 154 +     39990 tt---ttttcttttt------------------ttttcttttttttttcagacgagtctcgctctgtcgcccaggctggagtgcaatggcgctaccttgggtcactgcaacctccacctcctgggttcaaacaattctcctgcctcagcctccttagtagctgggattac-ggtgc
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29807397 158 + 172585720 CA---ttttattttttta---------------ttttttattttttttgagacgagtctcagtctgttgcccaggctggagtgcaatggcacaatcttggctcactgcaacctctgcctcccgagttcaaacaattctcctgcctcagcctcccgagtagctgggattacaggcgc
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29469700 158 - 170955103 CA---ttttattttttta---------------ttttttattttttttgagacgagtctcagtctgttgcccaggctggagtgcaatggcacaatcttggctcactgcaacctctgcctcccgagttcaaacaattctcctgcctcagcctcccgagtagctgggattacaggcgc
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2456231 158 -   2996164 TA---ttttattttttta---------------ttttttattttttttgagacgagtctcagtctgttgcccaggctggagtgcaatggcacaatcttggctcactgcaacctctgcctcccgagttcaaacaattctcctgcctcagcctcccgagtagctgggattacaggcgc
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             220732 157 +    766320 TAtttttttattttttta---------------ctt----ttttttttgagacgagtctcactctgttgccaaggctggagtgcaatggcacgatcttggctcactgcaacctccgcctcccgagttcaaacaattctcctgcctcagcctcccaagtagctggggttacaggcgc
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28732963 157 -  71996105 TAtttttttattttttta---------------ctt----ttttttttgagacgagtctcactctgttgccaaggctggagtgcaatggcacaatcttggctcactgcaacctccgcctcccgagttcaaacaattctcctgcctcagcctcccgagtagctggggttacaggcgc
i chlSab2.chr17                   C 0 C 0
e canFam3.chr35                    26141174 1061 +  26524999 I
e otoGar3.GL873742                  1963225   0 -   2232465 C
e cebCap1.NW_016107522v1             206302   5 +   3820305 I
e calJac3.chr6                    126581425   0 - 158406734 C
e colAng1.NW_012115566v1            2360753 1870 -   3067355 M
e manLeu1.NW_012099655v1             205265 155 -    352859 M

a score=16005.000000
s hg38.chr6_GL000254v2_alt           568107 3 +   4827813 cca
s panTro5.chr6                     29540527 3 + 175400573 cca
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29778807 3 + 173848474 cca
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5581617 3 +   6154872 cca
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     13153 3 +     39990 cca
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29807555 3 + 172585720 cca
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29469858 3 - 170955103 cca
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2456389 3 -   2996164 cca
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             220889 3 +    766320 cca
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28733120 3 -  71996105 cca
i chlSab2.chr17                   C 0 C 0
s colAng1.NW_012115566v1            2362625 3 -   3067355 cca
i colAng1.NW_012115566v1          M 1870 C 0
e canFam3.chr35                    26141174 1061 +  26524999 I
e otoGar3.GL873742                  1963225 0 -   2232465 C
e cebCap1.NW_016107522v1             206302 5 +   3820305 I
e calJac3.chr6                    126581425 0 - 158406734 C
e manLeu1.NW_012099655v1             205265 155 -    352859 M

a score=839126.000000
s hg38.chr6_GL000254v2_alt           568110 159 +   4827813 ccaccgtgcccggctaatttttgtatttttagtagagatggggtttcgccattttggccaggctggttttgaactcctgacctcaggtgatctgccc-acctcagcctcccaaagtgctgggattacaggtgtgagcaaccgtgctcagccATGAGGGGC
s panTro5.chr6                     29540530 160 + 175400573 ccaccatgcctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggttttgaaatcctgacctcaggtgatctgccccacctcagcctcccaaagtgctgggattacaggtgtgagcaaccgtgctcagcGATGAGGGGC
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29778810 160 + 173848474 ccaccgtgcctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggttttgaaatcctgacctcaggtgatctgccccacctcagcctcccaaagtgctgggattacaggtgtgagcaaccgtgctcagcGATGAGGGGC
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5581620 157 +   6154872 ccaccgtgcccggctaatttttgtatttttagtagagatggggttttgccatgttggccaggctggttttgaactcctgacctcaggtgatctgccc-acctcagcctccc-aagtgct-ggattacaggtgtgagcaaccgtgctcagccATGAGGGGC
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     13156 159 +     39990 ccaccgtccccggctaatttttgtatttttagtagagatggggtttcaccgtgttggccaggctggtttcgaactcctgacctcaggtgatctgccc-acctcagcctcccaaagtgctgggattacaggcgtgagcaaccgtgcccagccATGAGGGGG
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29807558 159 + 172585720 ccactgtgcctggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctagttttgaactcctgaccccaggtgatctgccc-acctcagcctcccaaagtgctgggattataggcgtgagcaacagtgcccagccACAAGGGGA
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29469861 159 - 170955103 ccactgtgcctggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctagttttgaactcctgacctcaggtgatctgccc-acctcagcctcccaaagtgctgggattataggcgtgagcaacagtgcccagccACAAGGGGA
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2456392 159 -   2996164 ccactgtgcctggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctagttttgaactcctgacctcaggtgatctgccc-acctcagcctcccaaagtgctgggattataggcgtgagcaacagtgcccagccACAAGGGGA
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             220892 159 +    766320 ccactgtgcctggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggttagttttgaactcttgacctcaggtgatttgccc-acctcagcctcccaaagtgctgggattataggcgtgagcaacagtgcccagccACGAGGGGA
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28733123 159 -  71996105 ccactgtgcctggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggttagttttgaactcctgacctcaggggatctgcct-acctcagcctcccaaagtgctgggattataggcgtgagcaacagtgcccagccATGAGGGGA
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             205420 130 -    352859 ccactgtgcctggctactttttgtatttttagtagagacagggtttcgccatgttggccaggctggttttgaactcctgacctcaggtgatctgccc-acctcagcctcccaaagtgctgggattataggc-----------------------------
i manLeu1.NW_012099655v1          M 155 C 0
s colAng1.NW_012115566v1            2362628 159 -   3067355 ccattgtgcctggcaaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggttttgaactcctgacctcaggtgatctgccc-acctcaacctcccaaagtgctggcattataggcatgagcaacagtgcccagccACCAGGCGA
i colAng1.NW_012115566v1          C 0 C 0
e canFam3.chr35                    26141174 1061 +  26524999 I
e otoGar3.GL873742                  1963225   0 -   2232465 C
e cebCap1.NW_016107522v1             206302   5 +   3820305 I
e calJac3.chr6                    126581425   0 - 158406734 C

a score=26972.000000
s hg38.chr6_GL000254v2_alt           568269 5 +   4827813 AATTC
s panTro5.chr6                     29540690 5 + 175400573 AATTC
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29778970 5 + 173848474 AATTC
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5581777 5 +   6154872 AATTC
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     13315 5 +     39990 GATTC
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29807717 5 + 172585720 GATTC
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29470020 5 - 170955103 GATTC
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2456551 5 -   2996164 GATTC
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             221051 5 +    766320 GATTC
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28733282 5 -  71996105 GATTC
i chlSab2.chr17                   C 0 C 0
s colAng1.NW_012115566v1            2362787 5 -   3067355 GATTC
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126581425 5 - 158406734 GATTC
i calJac3.chr6                    C 0 C 0
e canFam3.chr35                    26141174 1061 +  26524999 I
e otoGar3.GL873742                  1963225 0 -   2232465 C
e cebCap1.NW_016107522v1             206302 5 +   3820305 I
e manLeu1.NW_012099655v1             205550 0 -    352859 C

a score=34680.000000
s hg38.chr6_GL000254v2_alt           568274 7 +   4827813 TAATGGG
s panTro5.chr6                     29540695 7 + 175400573 TAATGGG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29778975 7 + 173848474 TAATGGG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5581782 7 +   6154872 TAATGGG
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     13320 7 +     39990 TAGTGGG
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29807722 7 + 172585720 TAGTGAG
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29470025 7 - 170955103 TAGTGAG
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2456556 7 -   2996164 TAGTGAG
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             221056 7 +    766320 TAGTGGG
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28733287 7 -  71996105 TAGTGGG
i chlSab2.chr17                   C 0 C 0
s colAng1.NW_012115566v1            2362792 7 -   3067355 TAGTGGG
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126581430 4 - 158406734 TAGT---
i calJac3.chr6                    C 0 C 0
s otoGar3.GL873742                  1963225 7 -   2232465 TAGTGGG
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                    26141174 1061 +  26524999 I
e cebCap1.NW_016107522v1             206302 5 +   3820305 I
e manLeu1.NW_012099655v1             205550 0 -    352859 C

a score=342727.000000
s hg38.chr6_GL000254v2_alt           568281 47 +   4827813 AGGACTTCCAGACAGGAGGGATAGTGTGATTTAAGAAAAGAAACACA
s panTro5.chr6                     29540702 47 + 175400573 AGGACTTCCAGACAGGAGGGATAGTGTGATTTAAGAAAAGAAACACA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29778982 47 + 173848474 AGGACTTCCAGACAGGAGGGATAGTGTGATTTAAGAAAAGAAACACA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5581789 45 +   6154872 AGGACTTCCAGACAGGAGGGATAGTGTGATTTAAGAAAACAA--ACA
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     13327 46 +     39990 AGGACTTCCAGACAGGAGGAATAGTGTGATTTAAG-AAACAAACACA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29807729 47 + 172585720 AGGACTTTCAGACAGGAGGAATAGTGTGATTTAAGAAAACAAACACA
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29470032 47 - 170955103 AGGACTTTCAGACAGGAGGAATAGTGTGATTTAAGAAAACAAACACA
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2456563 47 -   2996164 AGGACTTTCAGACAGGAGGAATAGTGTGATTTAAGAAAACAAACACA
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             221063 47 +    766320 AGGACTTTCAGACAGGAGGAATAGTATGATTTAAGAAAACAAACACA
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28733294 47 -  71996105 AGGACTTTCAGGCAGGAGGAATAGTATGATTTAAGAAAACAAACACA
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             205550 47 -    352859 CGGACTTTCAGACAGGAGGAATAGTGTGATTTAAGAAAACAAACACA
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2362799 47 -   3067355 AGGACTTTCAGACACGAGGAATAGTGTGATTTAAGAAAACAAACACA
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126581434 45 - 158406734 AGGACTCCCA-AGGGGAGGAATACTG-GATTTGAGAAAACAAACACA
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             206307 43 +   3820305 AGGACTCCCAGAGAGGAGGAATAGTGTGATTTGAGA----AAACACA
i cebCap1.NW_016107522v1          I 5 C 0
s otoGar3.GL873742                  1963232 40 -   2232465 AAGAATTCCAGATAAAAGGAATAGTATGATATG-------AAACACA
i otoGar3.GL873742                C 0 I 9
e canFam3.chr35                    26141174 1061 +  26524999 I

a score=1834954.000000
s hg38.chr6_GL000254v2_alt           568328 243 +   4827813 GCATGGTGATACAACCTGATTGATTTATTAAGAGTAATTAAGTCAGTCGCCATTATTAGACATGGAGATTGGCATGGGGTTAGAGAAGTCACAATGATAGATAATACTGGAATGGCAGTCAGGAAGCATTGTAAAGATATTGTTTGCCATCCTAA---GCTTTTTGGGCATCATTGCGTAATC----AAGTCAATAAAGAGCTAAAAGCTAAATTAATGTTACAAGATGTGATCTGCATCACCATTTGTC
s panTro5.chr6                     29540749 243 + 175400573 GCATGGTGATACAACCTGATTGATTTATTAAGAGTAATTAAGTCAGTCGCCATTATTAGACATGGAGATTGGCATGGGGTTAGAGAAGTCACAATGATAGATAATACTGGAATGGCAGTCAGGAAGCATTGTAAAGATATTGTTTGCCATCCTAA---GCTTTTTGGGCATCATTGCATAATC----AAGTCAATAAAGAGTTAAAAGCTAAATTAATGTTACAAGATGTGATCTGCATCACCATTTGTC
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29779029 243 + 173848474 GCATGGTGATACAACCTGATTGATTTATTAAGAGTAATTAAGTCAGTCGCCATTATTAGACATGGAGATTGGCATGGGGTTAGAGAAGTCACAATGATAGATAATACTGGAATGGCAGTCAGGAAGCATTGTAAAGATATTGTTTGCCATCCTAA---GCTTTTTGGGCATCATTGCATAATC----AAGTCAATAAAGAGTTAAAAGCTAAATTAATGTTACAAGATGTGATCTGCATCACCATTTGTC
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5581834 242 +   6154872 GCATGGTGATACAACCTGATTGATTTA-TAAGAGTAATTAAGTCAGTCGGCATTATTAGACATGGAGATTGGCATGGGGTTAGAGAAGTCACAATGATAGATAATACTGGAATGGCAGTCAGGAAGCATTGTAAAGATATTGTTTGCCGTCCTAA---GCTTTTTGGGCATCATTGCATAATC----AAGTCAATAAAGAGTTAAAAGCTAAATTAATGTTACAAGATGTGATCTGCATCACCATTTGTC
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     13373 243 +     39990 GCATGATGATACAACCTGATTGATTTATTGCGAGTAATTAAGTCAGTCAGCATTATTAGACATGGAGATTGGCCTGGGGTTGGAGAAGTCAAAATGATGGATAATACTAGAATGGCAGTCAGGAAGCATTGTAAAGATATTGTTTGCCATCCTAA---GCTTTTTGGGCATCATTGCATAATC----AAGTCAATAAAGAGTTAAAAGCTAAATTAATGTTACAAGATGTGATTTGCATCATCATTTATC
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29807776 247 + 172585720 GCATGGTGATACAACCTGATTGATGTATTAAGAGTGATTAAGTCAGTCAGCATTAGTAAACATGGAGATTGGCATGGGGTTGGAGAAGTCACAGTGATAGATAATACGGGAATGGCAGTCAGGAAGCATCGTAAAGATACTGTTTGCCATCCTAA---GCTTTTTGGGCATCCTTGCATAATCAATTAAGTCAATAAAGAGTTAAAAGCTAAATTAATGTTACAAGATGTGATTGGCATCACCATTTATC
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29470079 247 - 170955103 GCATGGTGATACAACCTGATTGATTTATTAAGAGTGATTAAGTCAGTCAGCATTATTAAACATGGAGATTGGCATGGGGTTGGAGAAGTCACAGTGATAGATAATACGGGAATGGCAGTCAGGAAGCATTGTAAAGATACTGTTTGCCATCCTAA---GCTTTTTGGGCATCCTTGCATAATCAATTAAGTCAATAAAGAGTTAAAAGCTAAATTAATGTTACAAGATGTGATTGGCATCACCATTTATC
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2456610 247 -   2996164 GCATGGTGATACAACCTGATTGATTTATTAAGAGTGATTAAGTCAGTCAGCATTATTAAACATGGAGATTGGCATGGGGTTGGAGAAGTCACAGTGATAGATAATACGGGAATGGCAGTCAGGAAGCATTGTAAAGATACTGTTTGCCATCCTAA---GCTTTTTGGGCATCCTTGCATAATCAATTAAGTCAATAAAGAGTTAAAAGCTAGATTAATGTTACAAGCTGTGATTGGCATCACCATTTATC
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             221110 247 +    766320 GCATAGTGATACAACCTGATTGATTTATTAAGAGTGATTAAGTCAGTCAGCATTATTAAACATGGAGATTGGCACGGGGTTGGAGAAGTCACAATGATAGATAATATGTGAATGGCAGTCAGGAAGCATTGTAAAGATATTGTTTGCCATCCTAA---GCTTTTTGGGCATCTTTGCATAATCAATTAAGTCAATAAAGAGTTAAAAGCTAAATTAATGTTACAAGATGTGATTGGCATCACCATTTATC
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28733341 243 -  71996105 GCATGGTGATACAACCTGATTGATTTATTAAGAGTAATTAAGTCAGTCAGCATTATTAAACATGGAGATTGGCATGGGGTTGGAGAAGTCACAAT----GATAATATGGGAATGGCAGTCAGGAAGCATTGTAAAGATATTGTTTGCCATCCTAA---GCTTTTTGGGCATCTTTGCATAATCAATTAAGTCAATAAAGAGTTAAAAGCTAAATTAATGTTACAAGATGTGATTTGCATCACCATTTATC
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             205597 247 -    352859 GCATGGTGATACAACCTGATTGATTTTTTGAGAGTAATTAAGTCAGTCAGCATTATTAAACATGGAGATTGGCATGGGGTTGGAGAAGTCACAGTGATAGATAATACGGGAATGGCAGTCAGGAAGCATTGTAAAGATACTGTTTGCCATCCTAG---GCTTTTTGGGCATCCTTGCATAATCAATTAAGTCAATAAAGAGTTAAAAGCTAAATTAATGTTACAAGATGTGATTGGCATCACCATTTATC
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2362846 247 -   3067355 GCATGGTGCTACAACCTGATTGATTTATTAAGAATAATTAAGTCAGTCAGCATTATTAAACGTGGAGATTGGCATGGGGTTGGAGAAGTCACAATGATAGATAATACGGGAATGGCAGTCAGGAAGCATTGTAAAAATATTGTTTGCCATCCTAA---GCTTTTTGGGCATCCTTGAATAATCAATTAAGTCAATAAAGAGTTAAAAGCTAAATTAATGTTACAAGATGTGATTGGCATCACCATTTATC
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126581479 250 - 158406734 GCATGGCGATACAACTTGACTGATTTATTAAGAGTAATTAAGTCAATCAGCATTATTAGACATGGAGATTAGCATAGGGTTGGAGAAGCCACAACAATAGATGATACTGGAATGGCAGTCAGAAAGCATTGTGAAGACATTACTTGCCATCTTAGGATGCCTTTTGTGCATCATTGCATAATCAGTTAAGTCAATAAAGAGTTAAAAGCTAAATTAATGTTACAGGATGTGATTTACATCACCATTTATC
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             206350 250 +   3820305 GCATGGTGATACAACTGGATTGATTTATTAAGAGTAATTAAGTCAATCAGCATTTTTAGACATGGAGATTAGCATAGGGTTGGAGAAGCCACAACAATAGAGGATACTGGAATGGCAGTCAGAAAGCATTGTAAAGATATTACTTGCCATCTTAGGATGCCTTTTGTGCATCATTGCGTGATCAATTAAGTCAATAAAGAGTTAAAAGCTAAATTAATGTTACAAGATGTGATTTACATCACCATTTATC
i cebCap1.NW_016107522v1          C 0 C 0
e canFam3.chr35                    26141174 1061 +  26524999 I
e otoGar3.GL873742                  1963272   9 -   2232465 I

a score=3745648.000000
s hg38.chr6_GL000254v2_alt           568571 549 +   4827813 CTGGCAACAGCATTGAAGTTGGATTAGAAATACATAAAACTGAAGAATAAAATATTGCCAGAGATAATGAAGGTTTGAACTAATCTGTACGTGTGACAGCAA--GATGTAATAACTACAACAGATAGTAA---GCAAATAAAATTTTGGTGTTTGATTGGATATACAGATTAAAGCAAAGTTGTGCTTGATTGGATATACAGATTAAAGCAAAGTTGTGCCATTCTTTGAAATAGGTCACAGTGACAGGGAGATGTCTGGGAGAAGAGATGAGTCCTTATGGGAAAGACCCATTCAGGGGCAGTGATGTGCCAACCGTGAAGCAGGATATGAGGACCTGCAACCCAGGGGACCTGCAACCCAGAAGACCTATGGTAGTGCTCGAAACAGCAGACTATTATTTTCT------------ATTGTGTAGGAAAATAGTTAATCTGTCTTCTTTAAAAGGC----ACAGGAATATTTTTGAGTAAACAAAAGTACAGAAAGAAAGTGTCAGGACAAATTTTTGGAAACCATCAAATTTCAATAAATGT-TAAaagaagacccagataacgagact
s panTro5.chr6                     29540992 499 + 175400573 CTGGCAACAGCATTGAAGTTGGATTAGAAATACATAAAACTGAAGAATAAAATATTGCCAGAGATAATGAAGGTTTGAACTAATCTGTACGTGTGACAGCAA--GATGTAATAACTACAACAGATAGTAA---GCAAATAAAATTTTGGTGTTTGATTGGATATACAGATTAAAGCAAAGTTGTGC----------------------------------CATTCTTTGAAATAGGTCACAGTGACAGGGAGATGTCTGGGAGAAGAGATGAGTCTTTATGGGAAAGACCCATTCAGGGGCAGTGATGTGCCAACCGTGAAGCAGGATATGAGGACCTGCAACCCAG----------------AAGACCTATGGTAGTGCTCGAAACAGCAGACTATTATTTTCT------------ATTGTGTAGGAAAATAGTTAATCTGTCTTCTTTAAAAGGC----ACCGGGATATTTTTGAGTAAAAAAAAGTACAGAAAGAAAGTGTCAGGACAAATTTTTGCAAACCATCAAATTTCAATAAATGT-TAAaagaagacccagataatgagact
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29779272 499 + 173848474 CTGGCAACAGCATTGAAGTTGGATTAGAAATACATAAAACTGAAGAATAAAATATTGCCAGAGATAATGAAGGTTTGAACTAATCTGTACGTGTGACAGCAA--GATGTAATAACTACAACAGATAGTAA---GCAAATAAAATTTTGGTGTTTGATTGGATATACAGATTAAAGCAAAGTTGTGC----------------------------------CATTCTTTGAAATAGGTCACAGTGACAGGGAGATGTCTGGGAGAAGAGATGAGTCTTTATGGGAAAGACCCATTCAGGGGCAGTGATGTGCCAACCGTGAAGCAGGATATGAGGACCTGCAACCCAG----------------AAGACCTATGGTAGTGCTCGAAACAGCAGACTATTATTTTCT------------ATTGTGTAGGAAAATAGTTAATCTGTCTTCTTTAAAAGGC----ACCGGGATATTTTTGAGTAAAAAAAAGTACAGAAAGAAAGTGTCAGGACAAATTTTTGGAAACCATCAAATTTCAATAAATGT-TAAaagaagacccagataatgagact
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5582076 498 +   6154872 CTGGCAACAGCATTGAAGTTGGATTAGAAATACATAAAACTGAAGAATAAAATATTGCCAGAGATAATGAAGGTTTGAACTAATCTGTACGTGTGACAGCAA--GATGTAATAACTACAACAGATAGTAA---GCAAATAAAATTTTGGTGTTTGATTGGATATATAGATTAAAGCAAAGTTGTGC----------------------------------CATTCTTTGAAATAGGTCACAGTGACAGGGAGATGTCTGGGAGAAGAGATGAGTCCTTATGGGAAAGACCCATTC-GGGGCAGTGATGTGCCAACTGTGAAGCAGGATATGAGGACCTGCAACCCAG----------------AAGACCTATGGTAGTGATCGAAACAGCAGACTATTATTTTCT------------GTTGTGTAGGAAAATAGTTAATCTGTCTTCTTTAAAAGGC----ACAAGAATATTTTTGAGTAAACAAAAGTACAGAAAGAAAGTGTCAGGACAAATTTTTGGAAACCATCAAATTTCAATAAATGT-TAAaagaagacccagataaagagact
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     13616 495 +     39990 CTGGCAACAGCATTGAAGTTGGATTAGAAATACATAAAACTGAAGAATAAAATATTGCCAGAGATAATGAAGGTTTGAACTAATCTGTACGTGTGACAGCAA--GAGGTAATAACTACAACAGATAGTAA---GCAAATAAAATTCTGGTGTTTGATTGGATATACGGATTAAAGCAAAGTTGTGC----------------------------------CATTCTTTGAAATAGGTAACAGTGACAGGGAGAGGTCTGGAAGAAGAGATGAGTCCTTATGGGAAAGACCCATTCAGGGGCAGTGATGTGCCATCCATGAAGCAGGATATGAGGACCTGCAACCCAG----------------AAGACCTATGGTAGTGCTCAAAACAGCCAACTATTATTTTCT------------ATTGTGTAGGAAAATAGTTAATCTGTCTTCTTTAAAAGGC----ACAAGAATATTTTTGAGTAAACAAAAGTACAGAAAGA----GTCAGGACAAATTTTTGGAAACCATCAAATTTCAGTAAATGT-TAAaagaagacccagataaagagact
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29808023 499 + 172585720 CTGACAACAGCACTGAAGTTGGATTAGAATTCCATAAAGCTGAAGAATGAAATATTGCCAGAGATAATGAAGGTTTGAACTAATCTGTACGTGTGACAGCAA--GAGGTAATAACTACAACAGGTAGTAA---GCAAATAAAATTTTGGTGTTTGATTGAATATACAGATTAAAGCAAAGTTG----------------------------------TGCCATTCTTTGAAATAGGTAACAGTGACAGGGAGACGGCTGGAAGAAGAGGTGAGTCCTTACGGCAAAGACCCATTCAGGGGCAGTGATGTGCCAACCATGAAGTAGGAGATGAGGACCTGCAACCCAG----------------AAGACCTATGGTAGTGCCCGAAACAGCCGACTATTATTTTCT------------ATTCTGTAAGAAAATAGTTAATCTGTCTTCTTTAAAAGGC----GCAATAGTATATTTGAGTAAACAGAAGTACAGAAAGAAAGTGTCAGGACAAATTTTTGGAAACCGTCAAATTTCAATAAATGT-TAAAAGAAGACTCAGATAAAGAGACT
i rheMac8.chr4                    C 0 I 321
s macFas5.chr4                     29470326 499 - 170955103 CTGACAACAGCACTGAAGTTGGATTAGAATTACATAAAGCTGAAGAATGAAATATTGCCAGAGATAATGAAGGTTTGAACTAATCTGTACGTGTGACAGCAA--GAGGTAATAACTACAACAGGTAGTAA---GCAAATAAAATTTTGGTGTTTGATTGAATATACAGATTAAAGCAAAGTTG----------------------------------TGCCATTCTTTGAAATAGGTAACAGTGACAGGGAGACGGCTGGAAGAAGAGGTGAGTCCTTACGGCAAAGACCCATTCAGGGGCAGTGATGTGCCAACCATGAAGTAGGAGATGAGGACCTGCAACCCAG----------------AAGACCTATGGTAGTGCCCGAAACAGCCGACTATTATTTTCT------------ATTCTGTAAGAAAATAGTTAATCTGTCTTCTTTAAAAGGC----ACAATAGTATATTTGAGTAAACAGAAGTACAGAAAGAAAGTGTCAGGACAAATTTTTGGAAACCGTCAAATTTCAATAAATGT-TAAAAGAAGACTCAGATAAAGAGACT
i macFas5.chr4                    C 0 I 322
s macNem1.NW_012011356v1            2456857 499 -   2996164 CTGACAACAGCACTGAAGTTGGATTAGAATTACATAAAGCTGAAGAATGAAATATTGCCAGAGATAATGAAGGTTTGAACTAATCTGTACGTGTGACAGCAA--GAGGTAATAACTACAACAGGTAGTAA---GCAAATAAAATTTTGGTGTTTGATTGAATATACAGATTAAAGCAAAGTTG----------------------------------TGCCATTCTTTGAAATAGGTAACAGTGACAGGGAGACGGCTGGAAGAAGAGGTGAGTCCTTATGGCAAAGACCCATTCAGGGGCAGTGATGTGCCAACCATGAAGTAGGAGATGAGGACCTGCAACCCAG----------------AAGACCTATGGTAGTGCCCGAAACAGCTGACTATTATTTTCT------------ATTCTGTAAGAAAATAGTTAATCTGTCTTCTTTAAAAGGC----ACAATAGTATATTTGAGTAAACAGAAGTACAGAAAGAAAGTGTCAGGACAAATTTTTGGAAACCGCCAAATTTCAATAAATGT-TAAAAGAAGACTCAGATAAAGAGACT
i macNem1.NW_012011356v1          C 0 I 322
s cerAty1.NW_012002711v1             221357 499 +    766320 CTGACAACAGCGCTGAAGTTGGATTAGAATTACATAAAGCTGAAGAATGAAATATTGCCAGAGATAATGAAGGTTTGAACTAATCTGTACGTGTGACAGCAA--GAGGTAATAACAACAACAGGTAGTAA---GCAAATAAAATTTTGGTGTTTGATTGAATATACAGATTAAAGCAAAGTTG----------------------------------TGCCATTCTTTGAAATAGGTAACAGTGACAGGGAGACGGCTGGAAGAAGAGGTGAGTCCTTATGGCAAAGACCCATTCAGGGGCAGTGATGTGCCAACCATGAAGTGGGAGATGAGGACCTGCAACCCAG----------------AAGACCTATGGTAGTGTCCGAAACAGCCCACTATTATTTTCT------------ATTCTGTAAGAAAATAGTTAATCTGTCTTCTTTAAAAGGC----ACAAGAGTGTATTTGAGTAAACAAAAGTACAGAAAGAAAGTGTCAGGACAAATTTTTGGAAACCGTCAAATTTCAATAAATGT-TAAAAGACGACTCAGATAAAGAGACT
i cerAty1.NW_012002711v1          C 0 I 325
s chlSab2.chr17                    28733584 499 -  71996105 CTGACAACAGCACTGAAGTTGGATTAGAATTACATAAAGCTGAAGAATAAAATATTGCCAGAGATAACGAAGGTTTGAACTAATCTGTACGTGTGACAGCAA--GAGGTAATAACTACAACAGGTAGTAA---GCAAATAAAAATTTGGTGTTTGATTGAATATACAGATTAAAGCAAAGTTG----------------------------------TGCCATTCTTTGAAATAGGTAACAGTGACAGGGAGACGGCTGGAAGAAGAGGTGAGTCCTTATGGCAAAGACCCATTCAGGGGCAGTGATGTGCCAACCATGAAGTAGGAGATGAGGACCTGCAACCCAG----------------AAGACCTATGGTAGTGCCCAAAACAGCCGACTATTATTTTCT------------GTTCTGTAAGAAAATAGTTAATCTGTCTTCTTTAAAAGGC----ACAATAGTATATTTGAGTAAACAGAAGTACAGAAAGAAAGTGTCAGGACAAATTTTTGGAAACCGTTAAATTTCAATAAATGT-TAAAAGAAGACTGAGATAAAGAGACT
i chlSab2.chr17                   C 0 I 326
s manLeu1.NW_012099655v1             205844 499 -    352859 CTGACAACAGCACTGAAGTTGGATTAGAATTACATAAAGCTGAAGAATGAAATATTGCCAGAGATAATGAAGGTTTGAACTAATCTGTACGTGTGACAGCAA--GAGGTAATAACTACAACAGGTAGTAA---GCAAATAAAATTTTGATGTTTGATTGAATATACAGATTAAAGCAAAGTTG----------------------------------TGCCATTCTTTGAAATAGGTAACAGTGACAGGGAGACGGCTGGAAGAAGAGGTGAGTCCTTATGGCAAAGACCCATTCAGGGGCAGTGATGTGCCAACCATGAAGTAGGAGATGAGGACCTGCAACCCAG----------------AAGACCTATGGTAGTGCCCCAAACAGCCGACTATTATTTTCT------------ATTCTGTAAGAAAATAGTTAATCTGTCTTCTTTAAAAGGC----ACAATAGTATATTTGAGTAAACAGAAGTACAGAAAGAAAGTGTCAGGACAAATTTTTGGAAACCGTCAAATTTCAATAAATGT-TAAAAGAAGACTCAgatgaagagact
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2363093 499 -   3067355 CTGACAACAGCATTGAAGTTGGATTAGAATTACATGAAGCTGAAGAATAAAATATTGCCAGAGACAATGAAGGTTTGAACTAATCTGTATGTGTGACAGCAA--GAGGTAATAACTACAACAGGTAGTAA---GCAAATAAAATTTTGGTGTTTGATTGAATATACAGATTAAAGCAAAGTTG----------------------------------TGCCATTCTTTGAAATAGGTAACAGTGACAGGGAGACGGCTGGAAGAAGAGGTGAGTCCTTATGGGAAAGACCCATTCGGGGGCAGTGATGCGCTAACCATGAAGTAGGATATGAGGACCTACAACCCAG----------------AAGACCTATGGTAGTGCCCGAAACAGCTGACTATTACTTTCT------------GTTCTGTAAGAAAATAGTTAATCTGTCTTCTTTAAAAGGC----ACAATAATATATTTGAGTAAACAAAAGTACAGAAAGAAAGTGTCAGGACAAAATTTTGGAAACCATTAAATTTCAATAAATGT-TAAAAGAAGACTCAGATAAAGAGACT
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126581729 479 - 158406734 CTGGCAACAGCATTGAAGTTGTATTAGAGTCACATAAAACTGAAGAATAAAATATTGCCAGAGATAATGAAGGTTTGAACTAATCTGTACATGTGACAGCTCTTGCTGTGATAAGTACAACAGACAGTAGTAAGCAAATAAAACTTTGACGTTTGATGGGATCTGCAGATTAAAGCA--------------------------------------------------------AGGTAACAGTGACGGGGAGTCGGCCGGAAGAAGAGATGAGTTCTCACAGGAGATACCCATTCAGGGGTAGCAATGCCCGAACCAT---GTAGGATATGAGGATCTG-GAGCCAG----------------AAGACCTATGGCAGTGCTTGAAACAGCCGACTATTATTTTCT------------ATTGCGTAGGGAAATAATTAATCTATCTTCTTTAAAAGGCACTTACGAGAATATTTTGGAGTAAACA-ATGTACAGAAAGGAAGTCTCAGGACATATTTTTGGAAACCATCAAATTTCAATAAATAT-TAACAGAAGA--CAGATTAAGAGACT
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             206600 478 +   3820305 CTGGCCACAGCATTGAAGTTGGATTAGAGTCACATAAAACTGAAGAATAAACTATTGCCAGAGATAATGAAGATTTGAACTAATCTGTACGTGTGACAGCAA--GAGGTGGTCACTACAACAGATAGTAG---GCAAATAAAATTTTGACGTTTGATTGGATATGCAGATTAAAGCA--------------------------------------------------------AGGTAACAGTGAC-GGGAGACGGCTGGAAGAAGAGATGAGTTCTCATAGGAAATACCCATTCAGGGGTAGCAATGTGTGAATCATGAAGTAGGATATGAGGACCTG-GACCCAG----------------AAGACCTACGGCAGTGCTTGAAACAGCCGACTATTATTTTCT------------ATTGTGTAGGAAAATAATTAATCTATCTTCTTTAAAAAGTACTTACGAGAATATTTTGGAGTAAACA-AAATACAGAAAGGAAGTCTCAAGACAAATTTTTGGAAACCATCAAGCTTCAATAAATGT-TAACGGAAGACTCAGATTAAGAGACT
i cebCap1.NW_016107522v1          C 0 C 0
s canFam3.chr35                      383065 469 -  26524999 CTGGCAACAGCATGGACATTGGATTGGAAGAAAATAAAACTGAAGGATTAAATATTGCCAGAGATGATGAAGGTTTGAACTAATCAATAAGTGTGACA---A--GAGGTAACAATTATGAGAGAAAACA----GCAGGCAATATCCTGATGGCTGAT-AGATGTGCAGAGAGGA-------------------------------------------------------AGATAGATAACAGAGACAGGAAGGCAGTTGAG---AGAGATGACT-CTGATGAGAGAGACCCAGTCTGAGGTGATGGTGTGCTGATCTTGAGGTTGTTTATGAAGATCTGAAAGTCAG--------------------------GTAGTACCTAAAACAGC--ACCA--ATTCAGTAAAAGTGTACAAATCATGTAGAGAAGCAGTTAAATTGGCTCCTTGAAGGGGCACTTACAAGAATATTTTTaggggaaaaaaa--aaagaaaagaggactgaggatg-acatttagatactgtcaaatttcaaaagacatgcataagaggagccagccaaggagaca
i canFam3.chr35                   n 1061 C 0
e otoGar3.GL873742                  1963272   9 -   2232465 I

a score=27086.000000
s hg38.chr6_GL000254v2_alt           569120 4 +   4827813 -aaga
s panTro5.chr6                     29541491 4 + 175400573 -aaga
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29779771 4 + 173848474 -aaga
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5582574 4 +   6154872 -aaga
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     14111 4 +     39990 -aaga
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29808843 4 + 172585720 -aaga
i rheMac8.chr4                    I 321 C 0
s macFas5.chr4                     29471147 4 - 170955103 -AAGA
i macFas5.chr4                    I 322 C 0
s macNem1.NW_012011356v1            2457678 4 -   2996164 -AAGA
i macNem1.NW_012011356v1          I 322 C 0
s cerAty1.NW_012002711v1             222181 4 +    766320 -aaga
i cerAty1.NW_012002711v1          I 325 C 0
s chlSab2.chr17                    28734409 4 -  71996105 -AAGA
i chlSab2.chr17                   I 326 C 0
s manLeu1.NW_012099655v1             206343 4 -    352859 -aaga
i manLeu1.NW_012099655v1          C 0 I 325
s colAng1.NW_012115566v1            2363592 4 -   3067355 -AAGA
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126582208 4 - 158406734 -AGGA
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             207078 4 +   3820305 -AGGA
i cebCap1.NW_016107522v1          C 0 C 0
s canFam3.chr35                      383534 4 -  26524999 gagg-
i canFam3.chr35                   C 0 C 0
e otoGar3.GL873742                  1963272 9 -   2232465 I

a score=55622.000000
s hg38.chr6_GL000254v2_alt           569124 6 +   4827813 aaaaat
s panTro5.chr6                     29541495 6 + 175400573 aaaaat
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29779775 6 + 173848474 aaaaat
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5582578 6 +   6154872 aaaaat
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     14115 6 +     39990 aaaaat
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29808847 6 + 172585720 aaaaat
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29471151 6 - 170955103 AAAAAT
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2457682 6 -   2996164 AAAAAT
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             222185 6 +    766320 aaaaat
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28734413 6 -  71996105 AAAAAT
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             206672 6 -    352859 AAAAAT
i manLeu1.NW_012099655v1          I 325 C 0
s colAng1.NW_012115566v1            2363596 6 -   3067355 AAAAAT
i colAng1.NW_012115566v1          C 0 I 324
s calJac3.chr6                    126582212 6 - 158406734 AAAAAT
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             207082 6 +   3820305 AAAAAT
i cebCap1.NW_016107522v1          C 0 C 0
s canFam3.chr35                      383538 6 -  26524999 aagaat
i canFam3.chr35                   C 0 C 0
e otoGar3.GL873742                  1963272 9 -   2232465 I

a score=237737.000000
s hg38.chr6_GL000254v2_alt           569130 28 +   4827813 attcaga---gaggaaatagaaaaccagaac---
s panTro5.chr6                     29541501 28 + 175400573 attcaga---gaggaaatagaaaaccagaac---
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29779781 28 + 173848474 attcaga---gaggaaatagaaaaccagaac---
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5582584 28 +   6154872 attcaga---gaggaaatagaaaacgagaac---
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     14121 28 +     39990 attcaga---gaggaaatagaaaaccagaac---
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29808853 28 + 172585720 attcaga---gaagaaataaaaaaCCAGAAC---
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29471157 28 - 170955103 ATTCAGA---GAAGAAATAGAAAACCAGAAC---
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2457688 28 -   2996164 ATTCAGA---GAAGAAATAGAAAACCAGAAC---
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             222191 28 +    766320 attcaga---gaagaaatagaaaaCCAGAAC---
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28734419 28 -  71996105 ATTCAGA---GAAGAAATAGAAAACCAGAAC---
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             206678 28 -    352859 ATTCAGA---GAAGAAATAGAAAACCAGAAC---
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2363926 28 -   3067355 ATTCAGA---GAAGAAATAGAAAACCAGAAC---
i colAng1.NW_012115566v1          I 324 C 0
s calJac3.chr6                    126582218 28 - 158406734 ATTCAGA---GAAGAAATAGAAAACCAGAAC---
i calJac3.chr6                    C 0 I 308
s cebCap1.NW_016107522v1             207088 28 +   3820305 ATTCAGA---GAAGAAATAGAAAACCAGAAC---
i cebCap1.NW_016107522v1          C 0 C 0
s canFam3.chr35                      383544 34 -  26524999 attcatagaggaagaaggagaaaaccagcaggga
i canFam3.chr35                   C 0 C 0
e otoGar3.GL873742                  1963272  9 -   2232465 I

a score=2005478.000000
s hg38.chr6_GL000254v2_alt           569158 262 +   4827813 taagtgt---cat-agagccaatggaagtcagctgttttagaagaaagaactgtataatagtgtcatatatttgagaaacaaaatttaaaata-aaaacaaaatagaaag--tgcattgaatttaccgttgtgatagttatttgtggatttgctggagctgtttgtgaggactcatgaa---gcaagaa-tgattaacatggttcaagaATTGAACCAAATGTGCCAGGGCACAGAATGATACCCTATTCTGCTCATAAAGCATGGCTGTAAA
s panTro5.chr6                     29541529 264 + 175400573 taagtgg---cat-agagccaatggaagtcagctgttttagaagaaagaactgtataatagtgtcatatatttgagaaagaaaatttaaaata-aaaacaaaatagaaagagtgcattgaatttaccattgtgatagttatttgtggatttgctggagctgtttgtgaggactcatgaa---gcaagaa-tgattaacatggttcaaaaATTGAACCAAATGTGCCAGGGCACAGAATGATACCCTATTCTGCTCATAAAGCATGGCTGTAAA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29779809 264 + 173848474 taagtgg---cat-agagccaatggaagtcagctgttttagaagaaagaactgtataatagtgtcatatatttgagaaagaaaatttaaaata-aaaacaaaatagaaagagtgcattgaatttaccattgtgatagttatttgtggatttgctggagctgtttgtgaggactcatgaa---gcaagaa-tgattaacatggttcaaaaATTGAACCAAATGTGCCAGGGCACAGAATGATACCCTATTCTGCTCATAAAGCATGGCTGTAAA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5582612 264 +   6154872 taagtgg---cat-agagccaatggaagtcagctgttttagaagaaagaactgtttaatagtgtcatatatttgagaaagaaagtttaaaata-aaaacaaaataggaagagtgcattgagtttaccattgtgatagttatttgtggatttgctggagctgtttgtgaggactcatgaa---ggaagca-tgatAAACATAGTTCAAAAATTGAACCAAATATGCAAGGGCACAGAATGATACCCTATTCTGCTCATAAAGCATGGCTGTAAA
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     14149 264 +     39990 taagtgg---cac-agagctaatggaggtgagctgttttagaagaaagaactgtataataatgtcatatatttgagaaagaaagtttaaaata-aaaacaaaatagaaagagtgcattgaatttaccattgtgatagttatttgtggatttgctggagctgtttGTGAGGACTCATCAA---GCAAGAA-TGATTAACATGGTTCAAAAATTCAACCAAATGTGCCAGGGCACAGAATGATACCCTATTCTGCTCATAAAGCATGGCTGTAAA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29808881 259 + 172585720 TAAGTGG---CAT-AGAGCCAATGGAAAAGAGCTGTTTTAGAACAAAGAACTGTATGATAGTGTCATATATTTGAGAAAG----TTTAAAATA-AAAACAAAATAGAAAGAGTGCATTGAATTTTCCATTGTGACAGTTATTTGTGGATTTGCTGGAGCTGTTTGTGAGCACTTATGAG---GCAAGCA-TGATAAACATGGTTCAA-AATTGAACTAAATGTGCCCGGGCACAGAATGATACCTTATTCTGCTCATAAAGCACGGCTGTAAA
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29471185 259 - 170955103 TAAGTGG---CAT-AGAGCCAATGGAAAAGAGCTGTTTTAGAACAAAGAACTGTATGATAGTGTCATATATTTGAGAAAG----TTTAAAATA-AAAACAAAATAGAAAGAGTGCATTGAATTTTCCATTGTGACAGTTATTTGTGGATTTGCTGGAGCTGTTTGTGAGCACTTATGAG---GCAAGCA-TGATAAACATGGTTCAA-AATTGAACTAAATGTGCCCGGGCACAGAATGATACCTTATTCTGCTCATAAAGCATGGCTGTAAA
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2457716 259 -   2996164 TAAGTGG---CAT-AGAGCCAATGGAAAAGAGCTGTTTTAGAACAAAGAACTGTATGATAGTGTCATATATTTGAGAAAG----TTTAAAATA-AAAACAAAATAGAAAGAGTGCATTGAATTTTCCATTGTGACAGTTATTTGTGGATTTGCTGGAGCTGTTTGTGAGCACTCATGAG---GCAAGCA-TGATAAACATGGTTCAA-AATTGAACTAAATGTGCCCGGGCACAGAATGATACCTTATTCTGCTCATAAAGCATGGCTGTAAA
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             222219 259 +    766320 TAAGTGG---CAT-AGAGCAGATGGAAAAGAGCTGTTTTAGAACAAAGAACTGTATGATAGTGTCATATATTTGAGAAAG----TTTAAAATA-AAAACAAAATAGAAAGAGTGCATTGAATTTTCCATTGTGACAGTTATTTGTGGATTTGCTGGAGCTGTTTGTGAGGACTCATGAG---GCAAGCA-TGATAAACATGGTTCAA-AATTGAACCAAATGTGCCAGGGCACAGAATGATACCTTATTCTGCTCATAGAGCATGGCTGTAAA
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28734447 260 -  71996105 TAAGTGG---CAT-AGAGCCGATGGAAAAGAGCTGTTTTAGAACAAAGAACTGTATGATAGTGTCATATATTTGAGAAAG----TTTAAAATA-AAAACAAAATAGAAAGAGTGCATTGAATTTTCCATTGTGACAGTTATTTGTGGATTTGCTGGAGCTGTTTGTGAGGACTCATGAG---GCAAGCATTGATAAACATGGTTCAA-AATTGAACCAAATGTGCCAGGGCACAGAACAATACCTTATTCTGCTCATAAAGCATGGCTGTAAA
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             206706 259 -    352859 TAAGTGG---CAT-AGAGCCGATGGAAAAGGGCTGTTTTAGAACAAAGAACTGTATGATAGTGTCATATATTTGAGAAAG----TTTAAAATA-AAAACAAAATAGAAAGAGTGCATTGAATTTTCCATTGTGACAGTTATTTGTGGATTTGCTGGAGCTGTTTGTGAGGACTCATGAG---GCAAGCA-TGATAAACATGGTTCAA-AATTGAACCAAATGTGCCAGGGCACAGAATGATACCTTATTCTGCTCATAGAGCATGGCTGTAAA
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2363954 259 -   3067355 TAAGTGG---CAC-AGAGCCAATGGAAAAGAGCTGTTTTAGAACAAAGAACTGTATGATAGTGTCATATATTTGAGAAAG----TTTAAAATA-AAAACAAAATAGAAAGAGTGCATTGAATTTTCCATTGTGACAGTTATTTGTGGATTTGCTGGAGCTGTTTGTGAAGACTCATGAG---GCAAGCA-TGATAAACATGGTTCAA-AATTGAACCAAATGTGCCAGGGCACAGAATGATACCTTATTTTGCTCATAAAGCATGGCTGTAAA
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126582554 266 - 158406734 CAAGTGGCATCAT-AGAACCAACGGAAGTGAGCTGTTTTAGAAGAAGTAACTATACAATAGTGTCATATATTTGAGAAAGAAATTTTAAAATATAAAGCAAA--AGAAAGAGTGCATTGGATGTACCATTGTAACAGTTATTTGTGGATTTGCTGGAGCTGTTTGTGAGGACCCATGAA---GCAAGCA-TGACAAACGTGGTTCAAAAATTGAACAAAATTTGCGAGGGCACAGAATGATACCCTGTTTTGCTCATAAAACATGGCTGTAAA
i calJac3.chr6                    I 308 C 0
s cebCap1.NW_016107522v1             207116 263 +   3820305 CAAGTGGCATCAT-AGAGCCAACAGAAGTGAGCTGTTTT---AGAAGTAACTATACAATAGTGTCATATATTTGAGAAAGAAAGTTTGATATATAAAACAAA--AGAAAGAGGGCATTGAATGTACCATTGTGACAGTTATTTGTGGATTTGCTGGAGCTGTTTGTGAGGACTCATGAA---GCAAGCG-TGACAAAGATGGTTCAAAAATTGAACAAAATGTGCCAGGGCACAGAATGAGACCCTGTTTTGCTCATAAAACATGGCTGTAAA
i cebCap1.NW_016107522v1          C 0 C 0
s canFam3.chr35                      383578 252 -  26524999 cgagtgg---tatcagattcagcagaagagagatattttagaagaaa-aactgtacagtagtgtcatatatttaagaaaggaaaattaaaata-acagcaaaaca---------cattgaatttaccatttttttggtcatttgtagacttgctggagctattcaggaggattcataggtatagaaaca-tgatgaacgttgttcaaaaaatgaatgagttatgagagg-----aaATCATAGACTACTCTCCTCA-GTAGGATGTCTATAAA
i canFam3.chr35                   C 0 n 0
e otoGar3.GL873742                  1963272   9 -   2232465 I

a score=852340.000000
s hg38.chr6_GL000254v2_alt           569420 168 +   4827813 GAGAAGGGACATTATAAGTAAGTCCTAAGTGTGGAGTGAAGACTTTTCTTTTTCTTTAAAATGGATGAGTCTTAAGAT------------------TATC----------------------------------------tctatctatctatctatct--atctatctatctatctatctat----ca------tctatct---------------atca---------------------tcatctatctatctctaatctatcatctatcA
s panTro5.chr6                     29541793 148 + 175400573 GAGAAGGGACATTATAAGTAAGTCCTAAGTGTGGAGTGAAGACTTTTCTTTTTCTTTAAAATGGATGAGTCTTAAGAT------------------TATC----------------------------------------tctatctatctatctatct--atc------------------------a------tctatct---------------atca---------------------tcatctatctatctCTAATCTGTCATCTATCA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29780073 165 + 173848474 GAGAAGGGACATTATAAGTAAGTCCTAAGTGTGGAGTGAAGACTTTTCTTTTTCTTTAAAATGGATGAGTCTTAAGAT------------------TATC----------------------------------------tctatctatctatctatct--atctatctatctatctatct-------a------tctatct---------------atca---------------------tcatctatctatctCTAATCTGTCATCTATCA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5582876 134 +   6154872 GAGAAGGGACATTATAAGTAAGTCCTAAGTGTGGAGTGAAGGCTTTTCTTTTTCTTTAAAATGGATGAGTCTTAAGAT------------------tatc----------------------------------------tctatctatctatctatct--atc--------------------------------------------------------------------------------atctatctgtctctaatctatcatctGTCA
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     14413 160 +     39990 GAGAAGGGACATTATAAGTAAGTCCTAAGTGTGGAGTGAAGGCTTTTCTTTTTCTTTAAAATAGATAAGTCTGAAGAT------------------TATC----------------------------------------tctatctatctatc-atct--atctatctatctatctatc--------a------tctatct---------------atc------------------------atctatctatctctaatctatcatctGTCA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29809140 235 + 172585720 GAGAAGGGACATTATAAGTAAGTCCTAAGTATGGAGTGAAGGCTTTTCTTTTTCTTTAAAGTGGAAAAGTCTTATGATTGTCTATATTCATCTGCctctc----tctctctctctctctctctctctctc----------tctatctatctctctatct--atctatcta--catctatctattatcta------tctatct---------------atctatctatctatctatctatctctcatctatctatctctAATTTATCATTTATCA
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29471444 235 - 170955103 GAGAAGGGACATTATAAGTAAGTCCTAAGTATGGAGTGAAGGCTTTTCTTTTTCTTTAAAGTGGAAAAGTCTTACGATTGTCTATATTCATCTGCctatc----tctctctctctctctctctctctctc----------tctatctatctctctatct--atctatcta--catctatctattatcta------tctatct---------------atctatctatctatctatctatctctcatctatctatctctAATTTATCATTTATCA
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2457975 266 -   2996164 GAGAAGGGACATTATAAGTAAGTCCTAAGTATGGAGTGAAGGCTTTTCTTTTTCTTTAAAGTGGAAAAGTCTTACGATTGTCTATATTCATCTGCCTATCGtctcctctctctctctctctctatctatcgtatcttacatctatctatctatctatct--atctatctatctatctatctactagttc------tatgcctaatcaggtctactacatctatctatctatctatctatctctcatctatctatctCTAATTTATCATTTATCA
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             222478 232 +    766320 GAGAAGGGACATTATAAGTAAGTCCCAAGTATGGAGTGAAGGCTTTTCTTTTTCTTTAAAGTGGGTAAGTCTTAAGATTGTCTATATTCATCTGCctatc----tatctatctctctgtctgtctgtctg----------tctgtctatctatcta--c--atccatcaatctatctatctat---cta------tctatct---------------atctatctatctatctatctatctctcatctatctatctCTAATTTATCATTTATCA
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28734707 216 -  71996105 GAGAAGGGACATTATAAGTAAGTCCTAAGTATGGAGTGAAGGCTTTTCTTTTTCTTTAAAGTGGATAAGTCTTAAGATTGTCTATATTCATCTGCctatc----ta----------------------------------tctatctatctatctatct--atctatctatctatccatccat---ccatccatctctatct---------------ctctatctatctatctacctgtctgtcatctatctatctCTCATTTATCATCCATCA
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             206965 240 -    352859 GAGAAGGGACATTATAAGTAAGTCCCAAGTATGGAGTGAAGGCTTTTCTTTTTCTTTAAAGTGGGTAAGTCTTAAGATTGTCTATATTCATCTGCctatc----tatctatctctctgtctgtctgtctg------tctgtctatctatctatctatctacatctatctatctatctatctat---cta------tctatct---------------atctatctatctatctatctatctctcatctatctatctCTAATTTATCATTTATCA
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2364213 178 -   3067355 GAGAAGGAACATTATAAGAAAGTCCTGAGTATGGAGTGAAGGCTTTTCTTTTTCTTTAAGGTGGGTAAGTCTTAAGATTGTCTATATTCATCTGCTTATC----------------------------------------TCTCTCTCTCTCtctatct--atctatcta-----------------ta------tctatct---------------atctatcaa----------------tcatctatttatctctcatttatcatctatcA
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126582820 138 - 158406734 GACAAGGGAGATTATAAGAAAGTCCTAAGTGTGGAGTGAAGGCTTTTCTTTTTCTTTAAAATGGTTGAGTCTTAAGA--------------------ATC----------------------------------------tctatctatctatctat----atctatc--------------------a------tctatct----------------------------------------------gtctatatataatctatcatctatcA
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             207379 136 +   3820305 GAGAAGGGAGATTATAACAAAGTCTTAAGTGTGGAGTGAAGGCTTTTCTTTTTCTTTAAAATGGATGAATCTTAAGA--------------------ATC----------------------------------------TAtatctgtctatctat-g--atct-----------------------a------tctatct----------------------------------------------atctatatctaatctatcatctatcA
i cebCap1.NW_016107522v1          C 0 C 0
e canFam3.chr35                      383830   0 -  26524999 I
e otoGar3.GL873742                  1963272   9 -   2232465 I

a score=5297445.000000
s hg38.chr6_GL000254v2_alt           569588 736 +   4827813 ACAGAGCATAGTGAAACAAT----CTGGTTCATTACGAGTAATCTCAGTAAATCAACATTATTAGAATTTTTAGACATGGAGTTTGTGTTG------ATTTTATacacacacatatacagacacacac--acacacaTAAAATGTGCACTATTATG--------------AA------------------------------------------------AGAGAGAGAGAGAGCA----AGTGCATACTGTGGCAAAGATGCCCTTTGCGATAGAGCAAGGTTGAGTATAGGGTTGGTCACTGACTTGGAAAGGAAAAAAGAGCTCTTTCTCTGCCTTTG-AAACCCTAGAGTGGGTGGAATTAAATCATGTTAGAGATCATTTCGTTTATATACAGGTAGGAAACTGAGGGGCTTAACATATAATTACCTATGTTTTCTCATTGAAGTTATTGGCAATGCTACCTCCCAGGAAATAG-AGGAAAATAGTGAAGAAGAGACACAGGATGCTAACTCTTTAGAGCAGCTACTGGAATGAATT---Agagtttacctac--ataacatatttgcacatgtaccactgaacttaaaagagaac---tactttc--aaaaaaaTTGAGGGTTTCAA---CATTTGAGAGGTAAAAAACGGA-AAAGTTTAGAAATGTTTTGTAGG-----ATAAAATTTGCATACAAGTGGTTAGTGAAGACAGAAAA-AAATGCTTGGGGGAAACAAATGACATTGAAAG-AATCATTATACTCTCCACCAAA-AAATGTTT-----------------------------------------------------------AGTTTTATTATAAA-TAAAGTATTTAATGCAGGTATGACTTGGAAGGAT
s panTro5.chr6                     29541941 737 + 175400573 ACAGAGCATAGTGAAACAAT----CTGGTTCATTAAGAGTAATCTCAGTAAATCAACATTATTAGAATTTTTAGACATGGAGTTTGTGTTG------ATTTTATacacacacatatacagacacacac--acacacaTAAAATGTGCACTATTATG--------------AA------------------------------------------------AGAGAGAGAGAGAGCA----AGCGCACACTGTGGCAAAGATGCCCTTTGCGATAGAGCAAGGTTGAGTATATGGTTGGTCACTGACTTGGAAAGGAAAAAAGAGCTCTTTCTCTGCCTTTG-AAACCCTAGAGTGGGTGGAATTAAATCATGTTAGAGATCATTTCGTTTATATACAGGTAGGAAACTGAGGGGCTTAACATATAATTACCTATGTTTTCTCATTGAAGTTATTGGCAATGCTACCTCCCAGGAAATAG-AGGAAAATAGTGAAGAAGAGACACAGGATGCTAACTCTTTAGAGCAGCTACTGGAATGAATT---Agagtttacctac--ataacatatttgcacatgtaccactgaacctaaaagagaac---tactttc--aaaaaaaTTGAGGGTTTCAA---CATATGAGAGGTAAAAAACGGA-AAAGTTTAGAAATGTTTTGTAGG-----ATAAAATTTGCATATAAGTGGTTAGTGAAGACAGAAAA-AAATGCTTGGGGGAAACAAATGACATTGAAAG-AATCATTATACTCTCCACCAAA-AAATGTTT-----------------------------------------------------------AGTTTTATTATAAAATAAAGTATTTAATGCAGGTATGACTTGGAAGGAT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29780238 737 + 173848474 ACAGAGCATAGTGAAACAAT----CTGGTTCATTAAGAGTAATCTCAGTAAATCAACATTATTAGAATTTTTAGACATGGAGTTTGTGTTG------ATTTTATacacacacatatacagacacacac--acacacaTAAAATGTGCACTATTATG--------------AA------------------------------------------------AGAGAGAGAGAGAGCA----AGCACACACTGTGGCAAAGATGCCCTTTGCGATAGAGCAAGGTTGAGTATATGGTTGGTCACTGACTTGGAAAGGAAAAAAGAGCTCTTTCTCTGCCTTTG-AAACCCTAGAGTGGGTGGAATTAAATCATGTTAGAGATCATTTCGTTTATATACAGGTAGGAAACTGAGGGGCTTAACATATAATTACCTATGTTTTCTCATTGAAGTTATTGGCAATGCTACCTCCCAGGAAATAG-AGGAAAATAGTGAAGAAGAGACACAGGATTCTAACTCTTTAGAGCAGCTACTGGAATGAATT---Agagtttacctac--ataacatatttgcacatgtaccactgaacctaaaagagaac---tactttc--aaaaaaaTTGAGGGTTTCAA---CATATGAGAGGTAAAAAACGGA-AAAGTTTAGAAATGTTTTGTAGG-----ATAAAATTTGCATATAAGTGGTTAGTGAAGACAGAAAA-AAATGCTTGGGGGAAACAAATGACATTGAAAG-AATCATTATACTCTCCACCAAA-AAATGTTT-----------------------------------------------------------AGTTTTATTATAAAATAAAGTATTTAATGCAGGTATGACTTGGAAGGAT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5583010 732 +   6154872 ACAGAGCATAGTGAAACAAT----CTGGTTCATTAAGAGTAATCTCAGTAAATCAACATTATTAGAATTTTTAGACATGGAGTTTGTGTTG------ATTTTATacacacacatatacag--acacac--acacacaTAAAATGTGCACTATTATG--------------AA--------------------------------------------------AGAGAGAGAGAGCA----AGCACACACTGTGGCAAAGATGCCCATTGCGATAGAGCAAGGTTGAGTATAGGGTTGGTCACTGACTTGGAAAGGAAAAACGAGCTCTTTCTCTGTCTTTG-AAACCCTGGAGTGGGTGGAATTAAATCATATTGGAGATCATTTCATTTGTATACAGGTAGGAAACGGAGGGGATTAACATATAATTACCTATGTTTTCTCATTGAAGTTATTGGCAATGCTGTCTCCCAGGAAATAG-AGGAAAATAGTGAAGAAGAGACTTAGGATGCTAATTCTTTAGAGCAGCTACTGGAATGAATT---Agagtttacctac--ataacatatttgcacatgtaccactgaacctaaaaGATAAC---TACTTTC---AAAAAATTGAGGGTTTCAA---CATATGAGAGGTAAAAAACGGA-AAAGTTTAGAAATGTTTTGTAGA-----ATAAAATTTGCATATAAGTGGTCAGTGAAGACAGAAAA-AAGTGCTTGGGGGAAACAAATAACATTGAAAG-AGTCATTTTACTCTTCACCAAA-AAATGTTT-----------------------------------------------------------AGTTTTATTATAAAATAAAGTATTTAATGCAGGTATGACTTGGAAGGAT
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     14573 738 +     39990 ACAGAGCATAGTGAAACAAT----CTGGTTCATTAAGAGTAATCTCAGTAAATCAACA-TATTAGAATTTTTAGACATGGAGTTTGTGTTG------ATTTTATacacacac--atacagacacacac--acacacaTAAAATGTGCACTATTATg--------------aaagag--------------------------------------------agagagagagagagCA----AGTGCACACTGTGACAAAGATGCCCTTTGCGATAGAGCAAGGTTGAGTATAGGGTTGGTCACTGACTTGGAAAGGAAAAAAGAGCTCTTTCTCTGCCTTTG-AAACCCTACAGTGGGTGGAATTAAATCATATTAGAGATCATTTCATTTGTATACAGGTAGGAAACTGAGGGGCTTAACATATAATTACCTATGTTTTCTCATTGAAGTTATTGGCAATGCTACTTCCCAGGAAATAG-AGGAAAATAGTGAAGAAGAGACTTAGGATGCTAACTGTTTAGAGCAGTTACTGGAATGAATT---Agagtttacctac--ataacatattcgcacatgtaccactgaacctaaaagagaac---tactttc--aaaaaaaTTGAGGGTTTCAA---CATATGAGAGGTAAAAAACAGA-AAAGTTTAGAAATGTTTTGTAGG-----ATAAAATTTGCATATAAGTGGTTAGTGAAGACAGAAAA-AAATGCTTGGGGGAAACAAATAACATTGAAAG-AATCATTACACTCTCCACCAAA-AAATGTTT-----------------------------------------------------------AGTTTTATTGTAAAATAAAGTATTTAATGCAGGTATGACTTGGAAGGAT
i nomLeu3.chr1a_JH996256_1_random C 0 I 190
s rheMac8.chr4                     29809375 772 + 172585720 ACGGAGAATAGTGAAACAATCTGACTGGTTCATTAAAAGTAATCTCAGTAAATCAACATTATTAGAATTTTTAGACATGGAGTTTGTGTGA------ATTTTATacatacacatacacag----acac--acacacaTAAAATGTGTGCTCTTgag--------------agagagagagagaaagagagagagagaaagagagagagag----------agacagagagagagca----agcgcaTACTGTGGCAAAGATGCCCTTT--------ACAAGGCTGTGTATAGGGTTGGTCACTGACTTGGAAAGGAAAAAAGAGCTCTTTCTCTGCTTTTG-AAACCCTGGAATGGGTGGAATTAAATCATATTAGAGATAATTTCATTTGTATACAGGTAGGAAACTGAGATATTTAACATATAATTACCTATGTTTTCTCACTGAAGTTGTTGGCAATGTGACCTCCCAGGAAATAG-AGGAAAATAGAGAAGAAGAGACTTAGGATGCGGACTCTCTAGAGCAGCTACTGGAATGAATT---Agagtttacctac--ataacgtgcctgcacgtgtaccactgaacctaaaagagaac---tactttcaaaaaaaAATTGAGTGTTTCAACAACATATGAGAGTTAAAAAACAG--ACAGTTTATAGATGTTTTGTAAG-----ATAAAATTTGCATATAAGTGGTTAGTGAAGAGAGAAAATAAATGCTTGGGGGAAACAAATAACATTCAAAG-AATCATTATACTCTCCACCAAA-AAATGTTT-----------------------------------------------------------AGTTTTATTATAAAATAAAGTATTTAATGCAGGTATGACTTGGAAGGAT
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29471679 770 - 170955103 ACGGAGAATAGTGAAACAATCTGACTGGTTCATTAAAAGTAATCTCAGTAAATCAACATTATTAGAATTTTTAGACATGGAGTTTGTGTGA------ATTTTATacatacacatacacag----acac--acacacaTAAAATGTGTGCTCTTgag--------------agagagagagagaaagagagagagagaa--agagagagac----------agacagagagagagCA----AGCGCATACTGTGGCAAAGATGCCCTTT--------ACAAGGCTGTGTATAGGGTTGGTCACTGACTTGGAAAGGAAAAAAGAGCTCTTTCTCTGCTTTTG-AAACCCTGGAATGGGTGGAATTAAATCATATTAGAGATAATTTCATTTGTATACAGGTAGGAAACTGAGATATTTAACATATAATTACCTATGTTTTCTCACTGAAGTTGTTGGCAATGTGACCTCCCAGGAAATAG-AGGAAAATAGAGAAGAAGAGACTTAGGATGCGGACTCTCTAGAGCAGCTACTGGAATGAATT---Agagtttacctac--ataacgtgcctgcacatgtaccactgaacctaaaagagaac---tactttcaaaaaaaAATTGAGTGTTTCAACAACATATGAGAGTTAAAAAACAG--ACAGTTTATAGATGTTTTGTAAG-----ATAAAATTTGCATATAAGTGGTTAGTGAAGAGAGAAAATAAATGCTTGGGGGAAACAAATAACATTCAAAG-AATCATTATACTCTCCACCAAA-AAATGTTT-----------------------------------------------------------AGTTTTATTATAAAATAAAGTATTTAATGCAGGTATGACTTGGAAGGAT
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2458241 783 -   2996164 ACGGAGAATAGTGAAACAATCTGACTGGTTCATTAAAAGTAATCTCAGTAAATCAACATTATTAGAATTTTTAGACATGGAGTTTGTGTGA------ATTTTATacatacacatacacag----acac--acacacaTAAAATGTGTGCTCTTgagagagagagagagaaagagagagagagaaagagagagagagaa--agagagagag----------agacagagagagagCA----AGCGCATACTGTGGCAAAGATGGCCTTT--------ACAAGGCTGTGTATAGGGTTGGTCACTGACTTGGAAAGGAAAAAAGAGCTCTTTCTCTGCTTTTG-AAACCCTGGAATGGGTGGAATTAAATCATATTAGAGATAATTTCATTTGTATACAGGTAGGAAACTGAGATATTTAACATATAATTACCTACGTTTTCTCACTGAAGTTGTTGGCAATGTGACCTCCCAGGAAATAG-AGGAAAATAGAGAAGAAGAGACTTAGGATGCGGACTCTCTAGAGCAGCTACTGGAATGAATT---Agagtttacctac--ataacgtgcctgcacatgtaccactgaacctaaaagagaac---tactttc-aaaaaaaACTGAGTGTTTCAACAACATATGAGAGTTAAAAAATAG--ACAGTTTATAGATGTTTTGTAAG-----ATAAAATTTGCATATAAGTGGTTAGTGAAGAGAGAAAATAAATGCTTGGGGGAAACAAATAACATTCAAAG-AATCATTATACTCTCCACCAAA-AAATGTTT-----------------------------------------------------------AGTTTTATTATAAAATAAAGTATTTAATACAGGTATGACTTGGAAGGAT
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             222710 774 +    766320 ACGGAGAATAGTGAAACAATCTGACTGGTTCATTAAAAGTAATCTCAGTAAATCAACATTATTAGAATTTTTAGACATGGAGTTTGTGTGA------ATTTTATacacacacatacacag----acac--acacacaTAAAATGTGTACTCTTgag--------------agagagcgagagagagagaaagagagagagagagacagac----------agacagagagagCGCA----AGCTCATACTGTGGCAAAGATGCCCTTT--------ACAAGGCTGTGTATAGGGTTGGTCACTGACTTGGAAAGGAAAAAAGAGCTCTTTCTCTGCTTTTG-AAACCCTGGAATGGGTGGAATTAAATCATATTAGAGACAATTTCATTTGTATACAGGTAGGAAACTGAGATATTTAACATATAATTACCTATGTTTTCTCACTGAAGTTGTTGGCAATGTGACCTCCCAGGAAATAG-AGGAAAATAGAGAAGAAGAGACTTAGGATGCAGACTCTCTAGAGCAGCTACTGGAATGAATT---Agagtttacctacatataacatgcctgcacatgtaccactgaacctaaaagagaac---tactttcaaaaaaaAATTGAGTGTTTCAACAACATATGAGAGTTAAAAAACAG--ACAGTTTATAGATGTTTTGTAAG-----ATAAAATTTGCATATAAGTGGTTAGTGAAGAGAGAAAATAAATGCTTGGGGGAAACAAATAACATTCAAAG-AATCATTATACTCTCCACCAAA-AAATGTTT-----------------------------------------------------------AGTTGTATTATAAAATAAAGTATTTAATGCAGGTATGACTTGGAAGGAT
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28734923 764 -  71996105 ATAGAGCATAGTGAAACAATCTGACTGGTTCATTAAAAGTAATCTCAGTAAATCAACATTATTAGAATTTTTAGACATGGACTTTGTGTGA------ATTTTATACACACACATACACAG----ACAC--ACACACATAAAATGTGTGCTCTTATG--------------Tgagagagagagagagagagagagaaagacagagagagaa----------agacagagagagagCA----AGCACATACTGTGGCAaagatgcccttt--------acaaggctgtgtataGGGTTGGTCACTGACTTGGAAAGGAAAAAAGAGCTCTTTCTGTGCCTTTG-AAACCCTGGAGTGGGTGGAATTAAATCATATTAGAGATAATTTCATT--TATACAGGTAGGAAACTGAGATATTTAACATATAATTACCTATGTTTTCTCACTGAAGTTATTGGCAATGTGACCTCCCAGGAAA-AG-AGGAAAATAGAGAAGAAGAGACTTAGGATGCTAACTGTCTAGAGCAGCTACTGGAATGAATT---Agagtttacctac--ataacatgcctgcacatgtgccactgaacctaaaagagaac---tactttcaaaaaaaAATTGAGGGTTTCAACAGCACCTGAGAGTTAAGAAACAG--ACAGTTTATAAATGTCTTGTAAG-----ATAAAATTTGCATATAAGTCGTTAGTGAAGAGAGAAAATAAATGCTTGGGGGAAACAAATAACATTCAAAG-AATCATTATACTCTCCACCAAA-AAATGTTT-----------------------------------------------------------AGTTTTATTATAAAA-----TATTTAATGCAGGTATGACTTGGAAGGAT
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             207205 782 -    352859 ACGGAGAATAGTGAAACAATCTGACTGGTTCATTAAAAGTAATCTCAGTAAATCAACATTATTAGAATTTTTAGACATGGAGTTTGTGTGA------ATTTTATacacacacatacacag----acac--acacacaTAAAATGTGTGCTCTTgag--------------agagacagagagagagaaagagagagagagaaagagagagagagacagacagacagagagagCGCA----AGCGCATACTGTGGCAAAGATGCCCTTT--------ACAAGGCTGTGTATAGGGTTGGTCACTGACTTGGAAAGGAAAAAAGAGCTCTTTCTCTGCTTTTG-AAACCCTGGAATGGGTGGAATTAAATCATATTAGAGATAATTTCATTTGTATACAGGTAGGAAACTGAGATATTTAACATATAATTGCCTATGTTTTCTCACTGAAGTTGTTGGCAATGTGACCTCCCAGGAAATAG-AGGAAAATAGAGAAGAAGAGACTTAGGATGCGGACTCTCTAGAGCAGCTACTGGAATAAATT---Agagtttacctac--ataacatgcctgcacatgtaccactgaacctaaaagagaac---tactttcaaaaaaaAATTGAGTGTTTCAACAACATATGAGAGTTAAAAAACAG--ACAGTTTATAGATGTTTTGTAAG-----ATAAAATTTGCATATAAGTGGTTAGTGAAGAGAGAAAATAAATGCTTGGGGGAAACAAATAACATTCAAAG-AATCATTATACTCTCCACCAAA-AAATGTTT-----------------------------------------------------------AGTTTTATTATAAAATAAAGTATTTAATGCAGGTATGACTTGGAAGGAT
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2364391 766 -   3067355 ATAGAGCATAGTGAAACAATCTGACTGGTTCTTTAAAAGTAATCTCAGTAAATCAACATTATTAGAATTTTTAGACATGGAGTTTGTGTGA------ATTTTATacacacacatacacag----acac--acacacaTAAAATGTGTGCTCTTGTg--------------agagagagagagagagagagagacagac----acagagacag--------agagagagagagagCA----AGCGCATACTGTGGCAAAGATGCCCTTT--------ACAAGGCTGTGTATAGGGTTGGTCACTGACTTGGAAAGGAAAAAGGAGCTCTTTCTCTGCCTTTG-AAACCCTAGAGTGGGTGGAATTAAATC-TATTAGAGATAATTTCATTTGTATACAGGTAGAAAACTGAGATATTTAACATATAATTACCTATGTTTTCTCACTGAAGTTACTGGCAATGTGACCTCCCAGGAAATAG-AGGAAAATAG---AGAAGAGACTTAGCATGCTAACTCTCTAGAGCAGCTACTGGAATGAATT---Agagtttacctac--ataacatacctgcacgtgtaccactgaacctaaaacagaaC---TACTTTCAAAAAACAATGGAGAGTTTCAACAACATATGAGAGTTAAAAAACAG--ACAGTTTATAAATGTTTTGTAGG-----ATAAAATTTGCATATAAGTGGTTAGTGAAGAGAGAAAATAAATGCTTGGGGGAAACAAGTAACATGCAAAG-AATCATTATACTCTCCATCAAA-AAATGTTT-----------------------------------------------------------AGTTTTATTATAAAATAAAGTATTTAATGCAGTTATGACTTGGAAGGAT
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126582958 716 - 158406734 ACAGAGCATAGTGAAACAATCTGATTGGTTCATTAAAAGTAATCTCAGCAAATCAACATTATTAGACTTTTTAGACATGGAGTTTATGAGG------ACTTTAGGCACACACATACAAAG--ATACAC--ACACACATAAGATGTGTGCTCTTgag--------------agagagagagag--------------------------------------agagagagagCGTGCAC---AACAAACACTATGGCAAAGATCCCCTTTGCGGTAGAGCAAGGCTGAGTCTGGGGTTAGTCACTGACTTGGAAAGGAAAAACGAGCTCTTTC------TTTG-AAATCCTAGAGTGGGTGGAATTAAATAATATCAGAGATAATTTCATTTGTAAACAGGTAGGAAACTGAGGGACTTAACCTGTAATGACCTACGTCTT----TTGAAGTTACTGGCAATGCTACCTCCCAAGAAATAG-AGGAAAGCAGTGAAGAAAAGACTTCGGA--------------------TACTGGAATGAATT---cgagtttacctac--ataacatacctgcccatgtacccctggacgtaaaagagaac---tacttt--taaaaaaaTTGAGGGGTTCAA---CATATGAGAGTTAAAAAACGAACGAAGCTTAGAAATGGTTTGTAGG-----ATAAAATTTGCATTTGAGTGGTTAGTGAGGAGAAAGA--AAATGCGTGGGGGAAACAAATCACATTGAAAG-AATC---ATACTCTCCA-CTAA-AAATGTTT-----------------------------------------------------------AGTTTTACTCTAAAATAAGATATTGAATCCTGGTGTGACTTGGGAGAAC
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             207515 733 +   3820305 ACAGAGCATAGTGAAACAATCTGATTGGTTCATTAAAAGTAATCTCAGCAAATCAACATCATTAGACTTTTTAGACATGGAGTTTGGGAGG------ACTTTAGacacacacatacacag--atacacatacacacaTAAAATGTGCGCTC----------------------------------------------------------------------GAGAGAGCTCGCTCACGCAAGCGCACACTATGGCAAAGATCCCCTTTGCGATAGAGCAAGGCTGAGTCTGGGGTTAGTCACTGACTTGGAAAGGAAAAACGAGCTCTTTC------TTTG-AAATCCTAGAGTGGGTGGAATTAAATCATATCAGAGATAATTTCATTTGTAAACAGATAGGAAACTGAGGGACTTAACATGTAATGACCTACGTTTTCTCATTGAAGTTACTGGCAATGCTACCTCCCAGGAAATAG-AGGAAAGCAGCGAAGAAGAGACTTCGGATGCTAAGTCTCTAGAGCAGCTGCTGGAATGAATT---cgagcttatctac--ataacatacctgcacatgtacccctgaacctgaaagggaac---tactttaaaaaaaAAATTGAGGGTTTCAA---CATATAAGAGTTAAAAAACAAACGAAGCTTAGAAATGTTTTGTAGG-----ATAAAATTTGCGTTTGAGTGGTTAGTGAAGGGAGAGA--AAATGCTTGAGGGAAACAAATCACATTGAAAG-AATCATTATACTCTCCACCTAA-CAATGTTT-----------------------------------------------------------AGTTTTATTATAAAATAAAGTATTTAATTCCAGTATGACTTGGAAGAAT
i cebCap1.NW_016107522v1          C 0 C 0
s otoGar3.GL873742                  1963281 757 -   2232465 ATAGAGCATGGTGATAAAATATGATTGGTTTACTAAAAGTAATCTCAATAAACCAACCTTA---------TTAGACATAGATTATGTATAATCCCATGTCCTCtgtgtgtgtgtgtgtgt----gtgt--gtgtTGTTTGGATGTATGTATCTGTG--------------AGG-----------------------------------------------GGGGAGAAAGAAG-------AGAGTGTACTGTTTCAA--CTAGCCATTAAGATA--GCAAGGCTGAGCATA-GCTGAGTCACTGATTTGGAAAAAAAAAAAAACACTTCTCTCTGTCTTCGAAAACTCAGGAGTGGGTGAAATTAAAGAATTGAAGAGATAATTTCCTTTGTATATAGGTAGAAAATTGAGGGACTTAATACCTAATTACCTACATTTTCTCATTTAAATGCCTAGCAATGCCACCTCCAAGGAAATAGCAGGAAAGCAGTG-----GAGATTTAGGATGCCAAATTTACACAGTAGCTTCCACAATTAATTAGAAGAGTTGACTTAT--------------------------------TGAAAGTCAACTTATACTTTC--CAAAACATACAGGGTTTCAA---CATATTAG---------ACAGACAAATTTTAGAAATATTTTTCAAGACAAAATAAAATTTTCATGTAAGTGGTTAGTGAAGACAGAAA--AAATATTTGGGGGTAATAAATAACACTGAAAGAAACCACTCCACTCGCCACCaaataaatgtttattttatttattttaaataaaagtgtttatattttataaaaggtgtattttatagtaacatttttattataaaataaaatatttaatGCACATATGAGTTGAAAGGCT
i otoGar3.GL873742                I 9 C 0
e canFam3.chr35                      383830   0 -  26524999 I

a score=2139545.000000
s hg38.chr6_GL000254v2_alt           570324 281 +   4827813 TGAACACAGGTTTTATATGTTCTTGCAGTATCATCCTTTATCCTAAGAGTATCTCCACA----------------------------------------CGTAT--ATGATTCCCTTCCTTCTTATTTGATAAG-------------TGATGAATTAATCAATACAATTTGGAACTAGTGAAATTAAAATGATGAAAATTTCCATTTATTAATCAGATATAAAAATTATTATCTATGTCTTCAAAGAAAAT------AAAAATGAAAATAGGTTGGTGGGAGTTGTTGAGAGGAGAATAT---GGTGTGTGCATTCAAG-TTTTTTCTT-ACGATTTTTCTCCTCCT
s panTro5.chr6                     29542678 281 + 175400573 TGAACACAGGTTTTATATGTTCTCGCAGTATCATCGTTAATCCTAAGAGTATCTCCACA----------------------------------------CGTAT--ATGATTCCCTTCCTTCTTATTTGATAAG-------------TGATGAATTAATCAGTACAATTTGGAACTAGTGAAATTAAAATGATGACATTTTCCGTTTATTAATCAGATATAAAAATTATTATCTATGTCTTCAAAGAAAAT------AAAAATGAAAATAGGTTGGTGGGAGTTGTTGAGAGGAGAATAT---GATGTGTGCATTCAAG-TTTTTTCTT-ACGATTTTTCTCCTCCT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29780975 281 + 173848474 TGAACACAGGTTTTATATGTTCTCGCAGTATCATCGTTAATCCTAAGAGTATCTCCACA----------------------------------------CGTAT--ATGATTCCCTTCCTTCTTATTTGATAAG-------------TGATGAATTAATCAGTACAATTTGGAACTAGTGAAATTAAAATGATGAAATTTTCCGTTTATTAATCAGATATAAAAATTATTATCTATGTCTTCAAAGAAAAT------AAAAATGAAAATAGGTTGGTGGGAGTTGTTGAGAGGAGAATAT---GATGTGTGCATTCAAG-TTTTTTCTT-ACGATTTTTCTCCTCCT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5583742 278 +   6154872 TGAACACAGGTTTTACATGTTCTCACAGTATCATCCTTAATCCTAAGTGTATCTCCACA----------------------------------------CGTAT--ATGATTC----CCTTCTTATTTGATAAG-------------TGATGAATTAATCAATACAATTTGGAACTAGTGAAATTAAAATGATGAAATTTTCCATTTATTAATCAGATATAAAAATTATTCGTTATGTCTTCAAAGAAAAT------AAAAATAAAAATAGGTTGGTGGGAGTTGTTGAGAGGAGAATAT---GGTGTGTGCATTCAAG-TTTTTTCTTAACGATTTTTCTCCTCCT
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     15501 277 +     39990 TGAACACAGGTTTTATATGTTCTCGCAGTATCATCCTTAATCCTAAGAGTATCTCCACA----------------------------------------TGTAT--ATGATTCCCTTCCTTCTTATTTGATAAG-------------TGATG----AATCAATACAATTTGGAACTAGTGAAATTAAAATGATGAAATTTTCCATTTATTAATCAGATATAAAAATTATTGTCTATGTCTTCAAAGAAAAT------AAAAATGAAAATAGGTTGGTGGGAGTTGTTGAGAGGAAAATAT---GGTGTGTGCATTCAAG-TTTCTTCTT-ATGATTTTTCTCCTCCT
i nomLeu3.chr1a_JH996256_1_random I 190 C 0
s rheMac8.chr4                     29810147 280 + 172585720 TGAACACAGGTTTTATATGTTCTCACAGTA-CATCCTTAATCCTAAGTGTATCTCCACA----------------------------------------TGTAT--ATGATTCCCTTCCTTCTTATTTGATAAG-------------TGATGAATCAATCAATACAATTTGCAACTAATGAAATTAAAATGATGAAATTATCCATGTATTCATCAGACATAAAAATTATTCTCTATGTCTTCAAAGAAAAT------AAAAATAAAAATAGGTTGGTGGGAGTTGTTGAGAGGAGAATAT---GGTGTGTTCATTCAAG-TTTTTTCTA-ATGATTTTTCTCCTCCT
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29472449 280 - 170955103 TGAACACAGGTTTTATATGTTCTCACAGTA-CATCCTTAATCCTAAGTGTATCTCCACA----------------------------------------TGTAT--ATGATTCCCTTCCTTCTTATTTGATAAG-------------TGATGAATCAATCAATACAATTTGCAACTAATGAAATTAAAATGATGAAATTATCCATGTATTCATCAGACATAAAAATTATTCTCTATGTCTTCAAAGAAAAT------AAAAATAAAAATAGGTTGGTGGGAGTTGTTGAGAGGAGAATAT---GGTGTGTTCATTCAAG-TTTTTTCTA-ATGATTTTTCTCCTCCT
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2459024 280 -   2996164 TGAACACAGGTTTTATATGTTCTCACAGTA-CATCCTTAATCCTAAGTGTATCTCCACA----------------------------------------TGTAT--ATGATTCCCTTCCTTCTTATTTGATAAG-------------TGATGAATCAATCAATACAATTTGCAACTAATGAAATTAAAATGATGAAATTATCCATGTATTCATCAGACATAAAAATTATTCTCTATGTCTTCAAAGAAAAT------AAAAATAAAAATAGGTTGGTGGGAGTTGTTGAGAGGAGAATAT---GGTGTGTTCATTCAAG-TTTTTTCTA-ATGATTTTTCTCCTCCT
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             223484 280 +    766320 TGAACACAGGTTTTATATGTTCTCACAGTA-CATCCTTAATCCTAAGTGTATCTCCACA----------------------------------------TGTAT--ATGATTCCCTTCCTTCTTATTTGATAAG-------------TGATGAATTAATCAATACAATTTGAAACTAATGAAATTAAAATGATGAAATTTTCCATGTATTCATCAGATATAAAAATTATTCTCTATGTCTTCAAAGAAAAT------AAAAATAAAAATAGGTTGGTGGGAGTTGTTGAGAGGAGAATAC---GGTGTGTGCATTCAAG-TTTTTTCTA-ATGATTTTTCTCCTCCT
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28735687 281 -  71996105 TGAACACAGGTTTTATATGTTCTCACAGTATCATCCTTAATCCTAAGTGTATCTCCACA----------------------------------------TGTAT--ATGATTCCCTTCCTTCTTATTTGATAAG-------------TGATGAATTAATCAATACAATTTGCAACTAATGAAATTAAAATGATGAAATTTTCCGTGTATTAATCAGATATAAAAATTATTCTCCATGTTTTCAAAGAAAAT------AAAAATAAAAATAGGTTGGTGGGAGTTGTTGAGAGGAGAATAC---GGTGTGTGCATTCAAG-TTTTTTCTA-ATGATTTTTCTCCTCCT
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             207987 280 -    352859 TGAACACAGGTTTTATATGTTCTCACAGTA-CATCCTTAATCCTAAGTGTATCTCCACA----------------------------------------TGTAT--ATGATTCCCTTCCTTCTTATTTGATAAG-------------TGATGAATTAATCAATACAATTTGCAACTAATGAAATTAAAATGATGAAATTTTCCATGTATTCATCAGATATAAAAATTACTCTCTATGTCTTCAAAGAAAAT------AAAAATAAAAATAGGTTGGTGGGAGTTGTTGAGAGGAGAATAT---GGTGTGTGCATTCAAG-TTTTTTCTA-ATGATTTTTCTCCTCCT
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2365157 275 -   3067355 TGAACACAGGTTTTGTATGTTCTCACAGTATCATCCTTAATCCTAAGTGTATCTCCACA----------------------------------------TGGAT--ATGATTCCCTTTTTTCTTATTTGATAAG-------------TGATGAATTAATCAATACAATTTACAGCTAATGAAATTAAAATGATGAAATTTTCCATGTATTAATCATACATAAAAATTATTCTCTATGTCTTCAAAG------------AAAATAAAAATAGGTTGGTGGGAGCTGTTGAGAGGAAAATAT---GGTGTGTGCATTCAAG-TTTTTTCTA-ATGATTTTTCTCCTCCT
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126583674 268 - 158406734 TGAAGACAGGCTTTATTTGCTCTCATGCCATCATCCTTAATTCTAAGTGTATCTCCACA----------------------------------------CGCAC--ATGGTTCCCTTCCTTC-AATTTGATGAG-------------TGATG----AATTAATACAGTTTGCAACTGGTGAAATTAAA---ATGAAATTTTCCATGTATTAATCAGATATAAAAATTATGCTCTATGTCTTCAAAGAAAAC------AAAAATAAAAATATGTTGTTGGGAGTTGTTGAAAGCAGAATAT---GGTGTGTATGTTCAAGtttttttctt-----tttttcttttt--
i calJac3.chr6                    C 0 I 283
s cebCap1.NW_016107522v1             208248 276 +   3820305 TGAAGACAGGTTTTATTTGCTCTCACAGCATCATCCTTAATTCTAAGTGTATTTCCACA----------------------------------------AGTAT--ATGGTTCCCTTCCTTC-AATTTGAT--G-------------TGATGAATTAATTAATACAATTTGCAACTAGTGAAATTAAA---ATGAAATTTTCCATGTATTAATCAGATATAAAAATTATTCTCTATGTCTTCAAAGAAAAC------GAAAATAAAAATATGTTGTTGGGAGTTGTTGAAAGCAGAATAT---AGTGTGGGTGTTCGAGTTTTTTTCTT-ATGATTTTTCTCCTCCT
i cebCap1.NW_016107522v1          C 0 C 0
s otoGar3.GL873742                  1964038 337 -   2232465 TGAATGCAAGTTTTATACGTTCTCACAATATCTTTCTTAATCCTAAACTTGTCTTCACAGATCATGGTTCCCTTACTTCCTATCTGAGAAGTGATACATTGTATTGATGGTTCCCTTACTTCCTATTTGAGAAGTGATACATTGTATTGATGCATTATTCAATGCAATTTATAAATAGTGAAATTAAGATAATCAAATTTTTCAACTAATAATCTGATATAAGAAT--------ATATATTCAAATAACATCCATTCAAAAATTAAAATAGATTGATGAGAATTGTTGAGAGCAGAATATGTAGGAGTGTGCACTGAAG-TTTTTCCTT-GTGGTTTTCCTCCTCCT
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                      383830   0 -  26524999 I

a score=663122.000000
s hg38.chr6_GL000254v2_alt           570605 94 +   4827813 TCCCTCTATGGAGAAACCTTAATGGGGAGGCTAAATGATAGAGGTTTTTCTTAGATTACATTAACAATGTGTATTAGAAGTGGTAAGTAACACG--
s panTro5.chr6                     29542959 94 + 175400573 TCCCTCTATGGAGAAACCTTAATGGGGAGGCTAAATGATAGAGGTTTTTCTTAGATTACATTAACAATGTGTATTAGAAGTGGTAAGTAACATG--
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29781256 94 + 173848474 TCCCTCTATGGAGAAACCTTAATGGGGAGGCTAAATGATAGAGGTTTTTCTTAGATTACATTAACAATGTGTATTAGAAGTGGTAAGTAACATG--
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5584020 93 +   6154872 TCCCTCTATGGAGAAACCTTAAT-GGGAGGCTAAATGATAGAGGTTTTTCTTAGATTACACTAACAATGTGTATTAGAAGTGGTAAGTAACATG--
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     15778 94 +     39990 TCCCTCTATGGAGAAACCTTAATGGGGAGGCTAAATGATAGAGGTTTTTCTTAGATTACACTAACAACGTGTGTTAGAAGTGGTAAGTAACACA--
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29810427 94 + 172585720 TCCCTCTATGGAGAAACCTTAATGGGGACGCTAAATCATAGAGGTTTTTCTTAAATTACACTAACAATGTGTATTAGAAGTGGTAAATAACATG--
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29472729 94 - 170955103 TCCCTCTATGGAGAAACCTTAATGGGGATGCTAAATGATAGAGGTTTTTCTTAAATTACACTAACAATGTGTATTAGAAGTGGTAAATAACATG--
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2459304 94 -   2996164 TCCCTCTATGGAGAAACCTTAATGGGGACGCTAAATGATAGAGGTTTTTCTTAAATTACACTAACAATGTGTATTAGAAGTGGTAAATAACATG--
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             223764 94 +    766320 TCCCTCTATGGAGAAACCTTAATGGGGAGGCTAAATGATAGAGGTTTTTCTTAAATTACACTAACAATGTGTATTAGAAGTGGTAAATAACATG--
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28735968 94 -  71996105 TCCCTCTATGGAGAAACCTTAATGGGGAGGCTAAATGATAGACGTTTTTCTTAAGTTACGCTAACAATGTGTACTAGAAGCAGTAAATAACACG--
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             208267 94 -    352859 TCCCTCTATGGAGAAACCTTAATGGGGAGGCTAAATGATAGAGGTTTTTCTTAAATTACACTAACAATGTGTATTAGAAGTGGTAAATAACATG--
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2365432 94 -   3067355 TCCGTCTATGGAGAAACCTTAATGAGGAGGCTAAATGATAGAGGTTTTTCTTAAATTACACTAACAATGTGTATTAGAAATGGTAAATAACATG--
i colAng1.NW_012115566v1          C 0 C 0
s cebCap1.NW_016107522v1             208524 93 +   3820305 TCCTTCTATGGAGAAACCTTAATGAGGAGCCTAAATGACAGAGGTTTTCCCTAGA-TACACTAACAATGTGTATTAGAATTGGCAAATAACACA--
i cebCap1.NW_016107522v1          C 0 C 0
s otoGar3.GL873742                  1964375 95 -   2232465 TCCTCTTATGGAAAAACCTCAATGTAGAGGTTAAAATATGGAGAGCATTCTTAGGTTACACTAAGAATGTGTAC-AGAAGTGGGCAGTAATAGAGG
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                      383830  0 -  26524999 I
e calJac3.chr6                    126583942 283 - 158406734 I

a score=19110.000000
s hg38.chr6_GL000254v2_alt           570699 2 +   4827813 AT
s panTro5.chr6                     29543053 2 + 175400573 AT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29781350 2 + 173848474 AT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5584113 2 +   6154872 AT
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     15872 2 +     39990 AT
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29810521 2 + 172585720 AT
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29472823 2 - 170955103 AT
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2459398 2 -   2996164 AT
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             223858 2 +    766320 AT
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28736062 2 -  71996105 AT
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             208361 2 -    352859 AT
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2365526 2 -   3067355 AT
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126584225 2 - 158406734 AT
i calJac3.chr6                    I 283 C 0
s cebCap1.NW_016107522v1             208617 2 +   3820305 AT
i cebCap1.NW_016107522v1          C 0 I 387
s otoGar3.GL873742                  1964470 2 -   2232465 AT
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                      383830 0 -  26524999 I

a score=2532768.000000
s hg38.chr6_GL000254v2_alt           570701 314 +   4827813 GCTTTTGA-TTTTCAAGCCAGAGACAGTAAGTTTTAAAATATAAGTGAATTGCTTTCATCTATTCACATTTTATTTTAAATTCCAAAAC----TACCATCCAATATTTGGAACAAGTTAAGCCAGGCATTAAGATTGGCAGCACTGGGGATTAAGCTATATCTTATGGAGGACCAGGAAAACTGTAGGAGCAAGAAAGCTAGAGAAACT--TTGAAGAAAGTAACCCCTGTTTTCCTCTGATTCCTACTGCCA-------TGAAGCAGGGGATGTGACCATCAGTGAGGGATTAAGGGCCCTTCCAGCCCTGAGACTGTTCCTTGT--GG
s panTro5.chr6                     29543055 314 + 175400573 GCTTTTGA-TTTTCAAGCCAGAGACAGTAAGTTTTAAAATATAAGTGAATTGCTTTCATCTATTCACATTTTATTTTAAATTCCAAAAC----TACCATCAAATATTTGGAGCAAGTTAAGCCAGGCATTAAGATTGGCAACACTGGGGATTAAGCTATACCTAATGGAGGACCAGGAAAACTGTAGGAGCAAGAAAGCTAGAGAAACT--TTGAAGAAAGTAACCCCTGTTTTCCTCTGATTCCTACTGCCA-------TGAAGCAGGGGGTGTGACCATCAGTGAGGGATTAAGGGCCCTTCCAGCCCTCAGACTGTTCCTTGT--GG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29781352 314 + 173848474 GCTTTTGA-TTTTCAAGCCAGAGACAGTAAGTTTTAAAATATAAGTGAATTGCTTTCATCTATTCACATTTTATTTTAAATTCCAAAAC----TACCATCAAATATTTGGAGCAAGTTAAGCCAGGCATTAAGATTGGCAACACTGGGGATTAAGCTATACCTAATGGAGGACCAGGAAAACTGTAGGAGCAAGAAACCTAGAGAAACT--TTGAAGAAAGTAACCCCTGTTTTCCTCTGATTCCTACTGCCA-------TGAAGCAGGGGGTGTGACCATCAGTGAGGGATTAAGGGCCCTTCCAGCCCTCAGACTGTTCCTTGT--GG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5584115 315 +   6154872 GCTTTTAATTTTTCAAGCCAGAGACAATAAGTTTTAAAATATAAGTGAATTGCTTTAATCTATTCACATTTTATTTTAAATTCCAAAAC----TACCATCCAATATTTGGAGCAAGTTAAGCCAGGCATTAAGATTGGCAGCAATGGGGATTAAGCCATATCTAATGGAGGACCAGGAAAACTGTAGGAGCAAGAAACCTAGAGAAACT--TTGAAGAGAGTAACCCCTGTTTTCCTCTGATTCCTACTGCCA-------TGAATCAGGGGATGTGACCATCAGTGAGGGATTAAGGGCCCTTCTAGGCCTGAGACTGTTCTTTGT--GG
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     15874 314 +     39990 GCTTTCGA-TTTTCAAGCCAGAGACAATAAGTTTTAAAATATAAGTGAATTGCTTTAATCCATTCACATTTTATTTTAAATTCCAAAAC----TACTATCCAATATTTGGAGCAAGTTAAGCCAGGCATTAAGATTGGCAGCAATGGGGATTAAGCCATATCTAATGGAGGACCAGGAAAACTATAGGAGCAAGAAAGCTAGAGAAACT--TTGAAGAAAGTAACCCCTGTTTTCCTCTGATTCCTACTGCCA-------TGAAGCAGGGGATGTGACCATCAGTGATGGATTAAGGGCCCTTCTAGCCCTGAGACTGTTTCTTGT--GG
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29810523 307 + 172585720 GCTCTTGA-TTTTCAAGCCAGAGACAATAAGTTTTAAAATATAAGTGAATTGTTTTAATCTA-------TTTATTTTAAATTCCAAAAC----TACCATCTGATATTTGGAGCAAGTTAAGCCAGGCATTAAGATTGGCAGCAATGGGAATTAAGCCATATCTAATGGAGGACCAGGAAAACTGTAGGAGTAAGAAAGCTAGAGAAACT--TTGAAGAAAGTAACCCCTGTTTTCCTCTGATTCTTACTGCCG-------TGAAGCAGGGGATGTGACCATCGGTGATGGATTAAGGGCCCTTCTATCCCTGAGACTGTGCCTTGT--GG
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29472825 307 - 170955103 GCTCTTGA-TTTTCAAGCCAGAGACAATAAGTTTTAAAATATAAGTGAATTGTTTTAATCTA-------TTTATTTTAAATTCCAAAAC----TACCATCTGATATTTGGAGCAAGTTAAGCCAGGCATTAAGATTGGCAGCAATGGGAATTAAGCCATATCTAATGGAGGACCAGGAAAACTGTAGGAGTAAGAAAGCTAGAGAAACT--TTGAAGAAAGTAACCCCTGTTTTCCTCTGATTCTTACTGCCG-------TGAAGCAGGGGATGTGACCATCGGTGATGGATTAAGGGCCCTTCTATCCCTGAGACTGTGCCTTGT--GG
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2459400 307 -   2996164 GCTCTTGA-TTTTCAAGCCAGAGACAATAAGTTTTAAAATATAAGTGAATTGTTTTAATCTA-------TTTATTTTAAATTCCAAAAC----TACCATCTGATATTTGGAGCAAGTTAAGCCAGGCATTAAGATTGGCAGCAATGGGAATTAAGCCATATCTAATGGAGGACCAGGAAAGCTGTAGGAGTAAGAAAGCTAGAGAAATT--TTGAAGAAAGTAACCCCTGTTTTCCTCTGATTCTTACTGCCG-------TGAAGCAGGGGATGTGACCATCGGTGATGGATTAAGGGCCCTTCTATCCCTGAGACTGTGCCTTGT--GG
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             223860 307 +    766320 GCTCTTGA-TTTTCAAGCCAGAGACAATAAGTTTTAAAATATAAGTGAATTGTTTTAATCTA-------TTTATTTTAAATTCCAAAAC----TACCATCTGATATTTGGAGCAAGTTAAGCCAGGCACTAAGATTGGCAGCAATGGGAATTAAGCCATATCTAATGGAGGACCAGGAAAACTGTAGGAGTAAGAAAGCTAGAGGAACT--TTCAAGAAAGTAACCCCTGTTTTTCTCTGATTCTTACTGCCG-------TGAAGCAGGGGATGTGACCATCGGTGATGGATTAAGGGCCCTTCTATCCCTGAGACTGTGCCTTGT--GG
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28736064 307 -  71996105 GCTCTTGA-TTTTCAAGCCAGAGACAATAAGTTTTAAAATATAAGTGAGTTGTTTTAATCTA-------TTTATTTTAAATTCCAAAAC----TACCATCTGATATTTGGAGCAAGTTAAGCCAGGCATTAAGATTGGCAGCAATGGGAATTAAGCCATATCTAATGGAGGACCAGGAAAACTGTAGGAGCGAGAAAGCTAGAGAAACT--TTGAAGAAAGTAACCCCTGTTTTTCTCTGATTCTTACTGCCG-------TGAAGCAGGGGATGTGACCATCGGTGATGGATTAAGGGCCCTTCTATCCCTGATACTGTGCCTTGT--GG
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             208363 307 -    352859 GCTCTTGA-TTTTCAAGCCAGAGACAATAAGTTTTAAAATATAAGTGAATTGTTTTAATCTA-------TTTATTTTAAATTCCAAAAC----TACCATCTGATATTTGGAGCAAGTTAAGTCAGGCATTAAGTTTGGCAGCAATGGGAATTAAGCCATATCTAATGGAGGACCAGGAAAACTGTAGGAGTAAGAAAGCTAGAGGAACT--TTGAAGAAAGTAACCCCTGTTTTTCTCTGATTCTTACTGCCG-------TGAAGCAGGGGATGTGACCATCGGTGATGGATTAAGGGCCCTTCTATCCCTGAGACTGTGCCTTGT--GG
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2365528 309 -   3067355 GCTCTTGA-TTTTCAAGCCAGAGAGAATAAGTTTTAAAATATAAGTGAATTGTTTTAATCTA-------TTTATTTTAAATTCCAAAAC----TACCATCTGATATTTGGAGCAAGTTAAGCCAGGCATTAAGATTGGCAGCAATGGGAATTAAGCCATATCTAATGGAGGACCAGGAAAACTGTAGGAACAAGAAAGCTAGAGAAACT--TTGAAGAAAGTAACCCCTGTTTTTCTCTGATTCTCACTGCCG-------TGAAGCAGGGGATGTGACCATCGGTGATGGATTAAGGGCCCTTCTATCCCTGAGACTGTGCCTTGTGGGG
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126584227 315 - 158406734 GCTTTTGA-TTTTCAAGCCAGAGACAGTAAGTTTTAAAATGTAAGTGGATTGCTTTAGTCTATTCACATTTTATTCTAAATTCCAAAAC----TACCATTCAAAATTTGGAGCAAGTTAAGCCAGACATTAAGATTTGCAGCAATGGGGATTAAGCCATACCTAATGGAGGACCAGAAAAACTGAAGGAGCAAGAAAGCCAAAGAAACT--TTGAAGAAAGTAACCCCTGCTTTCCTCTGATTCCTGCTGCCA-------TGAAGCAGGGGATGTGACTATTGGTGATGTATTCAGGACCCTTCTAGCCCTGAGACTGTTCTTTGT-AGG
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             209006 315 +   3820305 GCTTTTGA-TTTTCAAGCCAGAGACAATAAGTTTGAAAATGTAAGTGGACTGCATTAATCTATTCACATTTTATTTTAAATTCCAAAAC----TACAATCCAAAATTTGGAGCAAGTTAAGCCAGGCATTAAGATGTGCAGCCATGGGGATTAAGCCATACCTAATGGAGGACCAGGAAAACTGAAGGAGCAAGAAAGCTAAAGAAACT--TTGAAGAAAGTAACCCCTGCTTTCCTCTGATTCCTGCTGCCA-------TGAAGCAGGGAATGTGACCATTGGTGATGCATTAAGGACCCTTCTAGCCCTGAGACTGTTCTTTGT-AGG
i cebCap1.NW_016107522v1          I 387 C 0
s otoGar3.GL873742                  1964472 322 -   2232465 GCTTTTGA-TTTTCAAGTCATGGACAACAAATTCTAAAACATAAGTCAACTGCTTTAATACATTCATCTTTTACTTTAATTTCCAAAGCTACTTACTACACAGTGGTTAGAACAAGTTA----AGGCATTAGGGGTGACAGCAGTGGGGATTAAGTCATATTTGAGGGAGGAATAGGACAATTAAAGGAGCAAAAAGCCTACAGAACCTCCTTAAAGAAAAGAACTCCTATCTTCCTCTAATTCTTGCTGCCACACTAATTGAAGCAGGGGACA-GAACACAGGTGACAGTCTAAGGTCCTTGATAGCCCTAAGAGTATTTCTTGT--GG
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                      383830   0 -  26524999 I

a score=6667154.000000
s hg38.chr6_GL000254v2_alt           571015 795 +   4827813 AA----AAAAAAA---ATTTCCTAA-------AAATTAGTTTCAGTCAGTTCTCAAAATAAATTACAGCAAAATCAAAAAGAT------CTTGGTTTAAGTGATTTTTAACCTTTTCCTACAGCTTAGGGATTAATAAATGAAACAAACTACAATATCAGATGCAGTTACTTCAAAATCAGATGCATTAACTCATGTAACTTAGCCATTAAG-----------------TTTTTGTCTATATAGAACTGAAATCAATTATGTAGATA----TCCCGTTAAATAAGTATTTACTTAGAACCTATATGTTAGATGCCTTTGGTCAAGGGTGAAGAAATGGACAGAAATGATGAAGGAATAGTCTTTGTGCAGAAGAAACTCAGTGAAAATGATACTGATTGACCTTTCAACAAATGCACAGATTTAAAAAG-AAAAAAAAGAGGCAAAAATTAGTTAGCAGAGTGATTCTGAT-ACACAAAATAATTCTATGATGGTGTTGATTCTATAATAATAGCACATTTAAAATGAAATAGGAAAAGTTACATCATTTAATCCT-CCTAACAAT--TG--TTACATCTGGTATAGAT-T----TTTTTTTGTTTGGTT----GGTTATTTTAAGAAATGGGCTCCCACTATCTAATATATTTCAAGTCCTAGAAAG-------AAATATATATAT-A---T--AT----TTTTTCATTCAGGAAGTCACAATGAGACACAGCACTAGAAAGATATATACTCTACTACCTAGCATTCTGCCTATCACATAG--------------ATTTTAGAAAATCTCTTTATTTCTTCAAATGGATTTGATTGAAAATGTCCAACCCCAAGTTGTCATAAGAATTTTGAGAATTAAACG
s panTro5.chr6                     29543369 797 + 175400573 AA----AAAAAAA---ATTTCCTAG-------AAATTAGTTTCAGTCAGTTCTCAAAATAAATTACAGCAAAATCAAAAAGAT------CTTGGTTTAAGTGATTTTTAACCTTTTCCTACAGCTTAGGGATTAATAAGTGAAACAAACTACAATATCAGATGCAGTTACTTCAAAATCAGATGCATTAACTCATGTAACTTAGCCATTAAG-----------------TTTTTGTCTGTATAGAACTGAAATCAATTATGTAGATA----TCCTGTTAAATAAGTATTTACTTAGAACCTATATGTTAGATACCTTTGGTCAAGGGTGAAGAAATGGACAGAAATGATGAAGGAATAGTCTTTGTGCAGAAGAAACTCAGTGAAAATGATACTGATTGACCTTTCAACAAATGCACAGATTTAAAAAG-AAAAAAAAGAGGCAAAAATTAGTTAGCAGAGTGATTCTGAT-ACACAAAATAATTCTATGATGATGTTGATTCTATAATAATAGCACATTTAAAATGAAATAGGAAAAGTTACATCATTTAATCCT-CCTAACAAT--TG--TTACATCTGGTATAGAT-T----TTTTTTTGTTTGGTT----GGTTATTTTAAGAAATGGGCTCCCACTATCTAATATATTTCAAGTCCTAGAAAG-------AAATATATATAT-A---T--AT--ATTTTTTCATTCAGGAAGTCACAATGAGACACAGCACTAGAAAGATATATACTCTACTACCTAGCATTCTGCCTATCACATAG--------------ATTTTAGAAAATCTCTTTATTTCTTCAAATGGATTTGATTGAAAATGTCCAACCCCAAGTTGTCATAAGAATTTTGAGAATTAAACG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29781666 757 + 173848474 -A----AAAAAAA---ATTTCCTAG-------AAATTAGTTTCAGTCAGTTCTCAAAATAAATTACAGCAAAATCAAAAAGAT------CTTGGTTTAAGTGATTTTTAACCTTTTCCTACAGCTTAGGGATTAATAAGTGAAACAAACTACAATATCAGATGCAGTTACTTCAAAATCAGATGCATTAACTCATGTAACTTAGCCATTAAG-----------------TTTTTGTCTATATAGAACTGAAATCAATTATGTAGATA----TCCCGTTAAATAAGTATTTACTTAGAACCTATATGTTAGATACCTTTGGTCAAGGGTGAAGAAATGGACAGAAATGATGAAGGAATAGTCTTTGTGCAGAAGAAACTCAGTGAAAATGATACTGATTGACCTTTCAACAAATGCACAGATTTAAAAAG---AAAAAAGAGGCAAAAATTAGTTAGCAGAGTGATTCTGAT-ACACAAAATAATTCTATGATGATGTTGATTCTATAATAATAGCACATTTAAAATGAAATAGGAAAAGTTACATCATTTAATCCT-CCTAACAAT--TG--TTACATCTGGTATAGA--T----TTTTTTTGTTTGGTT----GGTTATTTTAAGAAATGGGCTCCCACTATCTAATATA---------------------------------------------------TTTGCATTCAGGAAGTCACAATGAGACACAGCACTAGAAAGATATATACTCTACTACCTAGCATTCTGCCTATCACATAG--------------ATTTTAGAAAATCTCTTTATTTCTTCAAATGGATTTGATTGAAAATGTCCAACCCCAAGTTGTCATAAGAATTTTGAGAATTAAACG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5584430 798 +   6154872 AA----AAAAAAA---TTTTCCTAA-------AAATTAGTTTCAGTCAGTTCTGAAAATAAATTACAGCAAAATCAAAAAGAT------CTTGGTTTAAGTGAGTTTTAACCTTTTCCTACAGCTTAGGGATTAATAAATGAAACAAACTACAATATCAGATGTAGTTACTTAAAAATCAGATGCAGTAACTCATGTAACTTAGCCATTAAG-----------------TTTTTATCTACATAGAACTGAAATCAATTATGTAGATA----TTCAGTTAAATAAGTATTTACTTAGAACCTATATGTTAGATACCATTGGTCAAGGGTGAAGAAATGGACAGAAATGATGAAGGAATAGTCTTTGTGCAGAAGAAACTCAGTGAAAATGATACTGATTGACCTTTCAACAAATGCACAGATTTAAAAAG--AAAAAAAAAGGCAAAAATTAGTTAGCAGAGTGATTCTGAT-ACACAAAATAATTCTATGATGATGTTGATTCTATAATAATAGCACATTTAAAATGAAATAGGAAAAGTTACATCATTTAATCCT-CCTAACAAT--TG--TTACATCTGGTATAGAT-T----TTTTTTTGTTTGGTT----GGTTATTTTAAGAAATGGGCTCCCACTATCTAATATATTTCAAGTCCTAGAAAGAAAAAAAAAATATATATAT-A---T--AT-----ATTTCATTCAGGAAGTCACAATGAGACATAGCACTAGAAAGATATAG--TCTACTACCTAGCATTCTGCCTATCACACAG--------------ATTTTAGAAAATCTCTTTATTTCTTCAAATGGATTTGATTGAAAATGTCCAACCCCAAGTTGTCATAAGAATTTTGAGAATTAAACG
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     16188 780 +     39990 ------GAAAAAA---ATTTCCTAA-------AAATTAGTTTCAGTCGGTTCTCAAAATGAATTACAGCAAAATCAAAAAGAT------ATTGGTTTAAGTGA-TTTTAACCTTTTCCTACAGCTTAGGGATTAATAAATGAAACAAACTACAATATCAGATGCAGTAACTTCAAAATCAGATGCAGTAACTCATGTAGCTTAGCCATTAAG-----------------TTTTTATCTATATAGAACTGAAATAAATTATGTAGATA----TCCAATTAAGTAAGTATTTACTTAGTACCTATATGTTAGAAACCATTGGTCAAGGGTGAAGAAATGGACAGAAATGATGAAGGAATAGTCTTTGTGCAGAAGAAACTCAGTGAAAATGATACTGATTGACCTTTCGACAAACGCACGGATTTAAAAAG-AAAAAAAAGAGGCAAAAATTAGTTAGCAGAGTGATTCTGAT-ACACAAAATAATTCTATGATGACAATGATTC--------TAGCACATTTAAAATGAAATAGGAAAAGTTACATCATTTAGTCCT-CCTAATAAT--TG--TTACATCTGGTATAGAT-T----TTTTTTTGTTTGGTT----GGTTATTTTAAGAAATGGGCTCCCACTATCTAATATATTTCAAGTCCTAGAGAG-------AAAAAAATGTAT-A---T--TT----TTTTTCATTCAGAAAGTCACAATGAGACATAGCACTAGAAAAATATATACTCTACTACCTAGCATTCTGCCTATCACATAG--------------ATTTTAGAAAATC----TATTTCTTCAAATGGATTTGATTGAAAATGTCCAACCCCAAGTTGTCATAAGAATTTTGAGAATTAAACG
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29810830 802 + 172585720 AA----AAAAAAA-ATACTTCCTAA-------AAATTAGTTTCAATCAGTTCTCAAAATAAATTACAGCAAAATCAGAAAGAT------CTTGGTTTAAGTGATTTTTAACCGTTTCCTATAGCTTAGGGATTAATAAATGAAACATACTACAATATCAGATACAGTAACTTCAAAATCCGATGCAGTAACTCATGTAACTTGGCCATTAAG-----------------TTTTTATCTATATAGAATTGAAATCAATTATGTAGATA----TCCAGTTAAATAACTATTTACTTAGTACTTATATGTTAGATACCATTGGTCAAGGGTGAAGAAATGGATTGAAATGGTGAAGGAATAGTCTTTGTGCAAAAGAAACTCAGTGAAAATGATACTGATTGACCTTTCAACAAATGCACAGATTTAAAAAG-AAAAAAAAGAGGCAAAAATTAGTTGGCAGAGTGATTCTGAT-ACACAAAATGATTCTATGATGATGATGATTCTACAATAATAGCACATTTAAAATAAAATAGGAAAAGTTACATCATTTAATCCT-CCTAACAAT--TG--TTACATCTGGTATAGATGT----TTCTTTTGTTTGGTT----GGTTATTTTAAGAAATGGGCTCCCACTATCTAATATATTTCAAGTCCTAGAGAG-------AAAAAAATACTG-T---T--TCTTTTTTTTTCATTTGGGAAGACACAATGAGACATAGCACTAGAAAGATACATACTCCACTACCTAGCATTCTCCCTATCACAGAG--------------ATTTTAGAAAATCTCTTTATTTCTTCAAATGGATTTGATTGAAAATGTCCAACCCCAAGTTGTCATAAGAATTCTGAGAATTAAACG
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29473132 802 - 170955103 AA----AAAAAAA-ATACTTCCTAA-------AAATTAGTTTCAATCAGTTCTCAAAATAAATTACAGCAAAATCAGAAAGAT------CTTGGTTTAAGTGATTTTTAACCGTTTCCTACAGCTTAGGGATTAATAAATGAAACATACTACAATATCAGATACAGTAACTTCAAAATCCAATGCAGTAACTCATGTAACTTGGCCATTAAG-----------------TTTTTATCTATATAGAATTGAAATCAATTATGTAGATA----TCCAGTTAAATAACTATTTACTTAGTACTTATATGTTAGATACCATTGGTCAAGGGTGAAGAAATGGATTGAAATGGTGAAGGAATAGTCTTTGTGCAAAAGAAACTCAGTGAAAATGATACTGATTGACCTTTCAACAAATGCACAGATTTAAAAAG-AAAAAAAAGAGGCAAAAATTAGTTGGCAGAGTGATTCTGAT-ACACAAAATGATTCTATGATGATGATGATTCTACAATAATAGCACATTTAAAATAAAATAGGAAAAGTTACATCATTTAATCCT-CCTAACAAT--TG--TTACATCTGGTATAGATGT----TTCTTTTGTTTGGTT----GGTTATTTTAAGAAATGGGCTCCCACTATCTAATATATTTCAAGTCCTAGAGAG-------AAAAAAATACTG-T---T--TCTTTTTTTTTCATTTGGGAAGACACAATGAGACATAGCACTAGAAAGATACATACTCCACTACCTAGCATTCTCCCTATCACAGAG--------------ATTTTAGAAAATCTCTTTATTTCTTCAAATGGATTTGATTGAAAATGTCCAACCCCAAGTTGTCATAAGAATTCTGAGAATTAAACG
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2459707 802 -   2996164 AA----AAAAAAA-ATACTTCCTAA-------AAATTAGTTTCAATCAGTTCTCAAAATAAATTACAGCAAAATCAGAAAGAT------CTTGGTTTAAGTGATTTTTAACCGTTTCCTACAGCTTAGGGATTAATAAATGAAACATACTACAATATCAGATACAGTAACTTCAAAATCCGATGCAGTAACTCATGTAACTTGGCCATTAAG-----------------TTTTTATCTATATAGAATTGAAATCAATTATGTAGATA----TCCAGTTAAATAACTATTTACTTAGTACTTATATGTTAGATACCATTGGTCAAGGGTGAAGAAATGGATTGAAATGGTGAAGGAATAGTCTTTGTGCAAAAGAAACTCAGTGAAAATGATACTGATTGACCTTTCAACAAATGCACAGATTTAAAAAG-AAAAAAAAGAGGCAAAAATTAGTTGGCAGAGTGATTCTGAT-ACACAAAATGATTCTATGATGATGATGATTCTACAATAATAGCACATTTAAAATAAAATAGGAAAAGTTACATCATTTAATCCT-CCTAACAAT--TG--TTACATCTGGTATAGATGT----TTCTTTTGTTTGGTT----GGTTATTTTAAGAAATGGGCTCCCACTATCTAATATATTTCAAGTCCTAGAGAG-------AAAAAAATACTG-T---T--TCTTTTTTTTTCATTTGGGAAGACACAATGAGACATAGCACTAGAAAGATACATACTCCACTACCTAGCATTCTCCCTATCACAGAG--------------ATTTTAGAAAATCTCTTTATTTCTTCAAATGGATTTGATTGAAAATGTCCAACCCCAAGTTGTCATAAGAATTCTGAGAATTAAACG
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             224167 807 +    766320 AA----AAAAAAATATACTTCCTAA-------AAATTAGTTTCAATCAGTTCTCAAAATAAATTACAGCAAAATCAGAAAGAT------CTTGGTTTAAGTGATTTTTAATCGTTTCCTACAGCTTAGGGATTAATAAATGAAACATACTACAATATCAGATACAGTAACTTCAAAATCCGATGCAGTAACTCACGTAACTTGGCCATTAAG-----------------TTTTTATCTATATAGAATTGAAATCAATTATGTAGATA----TCCAGTTAAATAACTATTTACTTAGTACTTATATGTTAGATACCATTGGTCAAGGGTGAAGAAATGGATTGAAATGATGAAGGAATAGTCTTTGTGCAAAAGAAACTCAGTGAAAATGATACTGATTGACCTTTCAACAAATGCACAGATTTAAAAAGAAAAAAAAAGAGGCAAAAATTAGTTGGCAGAGTGATTCTGAT-ACACAAAATGATTCTATGATGATGATGATTCTACAATAATAGCACATTTAAAATGAAATAGGAAAAGTTACATCATTTAATCCT-CCTAACAAT--TG--TTACATCTGGTATAGATGT----TTCTTTTATTTGGTT----GGTTATTTTAAGAAATGGGCTCCCACTATCTAATATATTTCAAGTCCTAGAGAG-------AAAAAAATACTG-TTTGT--TTTTTTTTTTTCATTTGGGAAGACACAATGAGACATAGCACTAGAAAGATACATACTCCACTACCTAGCATTCTCCCTATCACAGAG--------------ATTTTAGAAAATCTCTTTATTTCTTCAAATGGATTTGATCGAAAATGTCCAACCCCAAGTTGTCATAAGAATTCTGAGAACTAAACG
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28736371 806 -  71996105 AA----AAAAAAATATACTTCCTAA-------AAATTAGTTTCAATCAGTTCTCAAAATAAATTACAGCAAAATCAGAAAGAT------CTTGGTTTAAGTGATTTTTAACCGTTTCCTACAGCTTAGGGATTAATAAATGAAACAAACTACAATATCAGATACAGTAACTTCAAAATCCGATGCAGTAACTCATGTAACTTGGCCATTAAG-----------------TTTTTATCTATATAGAAGTGAAATCAGTTATGTAGATA----TCCAGTTAAATAACTATTTACTTAGTACCTATATGTTAGATACCATTGGTCAAGGGTGAAGAAATGGACTGAAATGATGAAGGAATAGTCTTTGTGCAAAAGAAACTCAGTGAAAATGATACTGATTGACCTTTCAACAAATGCACAGATTTAAAAAG-AAAAAAAAGAGACAAAAATTAGTTGGCAGAGTGATTCTGAT-ACACAAAATGATTCTATGATGATGATGATTCTACAATAATAGCACATTTAAAATGAAATAGGAAAAGTTACATCATTTAATCTT-CCTAACAAT--TG--TTACATCTGCTATAGATGT----TTCTTTTGTTTGGTT----GGTTATTTTAAGAAATGGGCTCCCGCTATCTAATATATTTCAAGTCCTAGAGAG-------AAAAAAATACTGTT---TTGTTTTTTTTTTTCATTTGGGAAGACACAATGAGACATAGCACTAGAAAGATACATACTCCACTACCTAGCATTCTCCCTATCACAGAG--------------ATTTTAGAAAATCTCTTTATTTCTTCAAATGGATTTGATCGAAAATGTCCAACCCCAAGTTGTCATAAGAATTCTGAGAATTAAACG
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             208670 805 -    352859 AA----AAAAATATATACTTCCTAA-------AAATTAGTTTCAATCAGTTCTCAAAATAAATTACAGCAAAATCAGAAAGAT------CTTGGTTTAAGTGATTTTTAACCGTTTCCTACAGCTTAGGGATTAATAAATGAAATATACTACAATATCAGATACAGTAACTTCAAAATCCGATGCAGTAACTCATGTAACTTGGCCATTAAG-----------------TTTTTATCTATATAGACGTGAAATCAATTATGTAGATA----TCCAGTTAAATAACTATTTACTTAGTACTTATATGTTAGATACCATTGGTCAAGGGTGAAGAAATGGATTGAAATGATGAAGGAATAGTCTTTGTGCAAAAGAAACTCAGTGAAAATGATACTGATTGACCTTTCAACAAATGCACAGATTTTAAAAG-AAAAAAAAGAGGCAAAAATTAGTTGGCAGAGTGATTCTGAT-ACACAAAATGATTCTATGATGATGATGATTCTACAATAATAGCACATTTAAAATGAAATAGGAAAAGTTACATCATTTAATCCT-CCTAACAAT--TG--TTACATCTGGTATAGATGT----TTCTTTTGTTTGGTT----GGTTATTTTAAGAAATGGGCTCCCACTATCTAATATATTTCAAGTCCTAGAGAG-------AAAAAAATACTG-T---TTGTTTTTTTTTTTCATTTGGGAAGACACAATGAGACATAGCACTAGAAAGATACATACTCCACTACCTAGCATTCTCCCTATCACAGAG--------------ATTTTAGAAAATCTCTTTATTTCTTCAAATGGATTTGATTGAAAATGTCCAACCCCAAGTTGTCATAAGAATTCTGAGAATTAAACG
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2365837 800 -   3067355 AA----AAAGAAA-ATATTTCCTAA-------AAATTAGTTTCAATCAGTTCTCAAAATAAATTACAGCAAAATCAGAAAGAT------CTTGGTTTAAGTGATTTTTAACCGTTTCCTACAGCTTAGGGATTAATAAATGAAACAAACTACAATATCAGATACAGTAACTTCAAAATCTGATGCAGTAACTCATGTAACTTGGCCATTAAG-----------------TTTTTATCTATATAGAAGTGAAATCAATTATGTAGATA----TCCAGTTAAATAACTACTTACTTAGTACTTCTATGTTAGATACCATTGGTCAAGGGTGAAGAAATGGACTGAAATGATGAAGAAATAGTCTTTGTGCAAAAGAAACTCAGTGAAAATGATACTGATTGACCTTTCAACAAATGCACAGATTTAAAAAGAAAAAAAGAGAGGCAAAAATTAGTTGGCAGAGTGATTCTGATAACACAAAATGATTCTATGATGATGATGATTCTACAATAATAGCACATTTAAAATGAAATAGGAAAAGTTACATCATTTAATCCT-CCTAACAAT--TG--TTACATCTGCTATAGATGT----TTCTTTTGTTTGGTT----GGTTATTTTAAGAAATGGTCTCCCACTATCTAATATATTTCAAGTCCTAGAGAG-------AAAAAAATACTT-T---T------TTTTTTTCATTTGGGAAGACACAATGAGACATAGCACTAGAAAGATACATACTCCACTACCTAGCATTCTGCCTATCACAGAG--------------ATTTTAGAAAATCTCTTTATTTCTTCAAATGGATTTGATTGAAAATATCCAACCCCAAGTTGTCATAAGAATTTTGAGAATTAAACA
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126584542 804 - 158406734 AA----AAAAAAA---GTTTCCTAA-------AAATTAGTTTCAGTCAGTTCTCAAAATAAATTACAGCAAAACCAAAAAGAT------CTTGGTTTAAGTGATTTTTAACCTTTTTCTACAGCTTA-GGATTTATAAGTGAAAGAAATTACAATGTCAGGTGGAGTAACTTCAAAATCAGATGCAGTAACTCATGTAACTTGGTCATTAAGTTTTTTTTGTCATTAAGTTTTTATCTGTATAGTACTCAAATAAAATATGTAGATA----TCCCATTAAATAAGTATTTACTTAGTACCCATCTGATAGTTACCATTGGTC-AGGGTGAAGAAATGGACAGAAATGATGAAGGAATGGTCTTTGTGTAAAAGAAACTCAGTGAAAATGATACTGATTGACCTTTCAACAAATCCAAAGATTTAAAAAG-AAAACAAAGAGGCAAAAATTAGTTAGCAGAGTGATTCTGAT-ACACAAAACGATTCTATGATGATGATGATTCTACAATAATAGCATATTTAAAATGCAGTAGGAGAACTTACATCATTTAATCCT-CCTAACAAT--TG--TTACATCTGGTATAGAGGT----TTTGTTTGCTTGGCT----GGTGATTTTAAGAAATGGGCACCCACTATC-----TATTTCAAGTCCTAGAGAG--------AAAAAATATTG-T---T--TT-----TTCTCATTAGGGAAGTCACAATGAGACACAGCACTAGAAAGGTATATACTCTACTACCTAGCATTCTGCCTGTCACATAG--------------ATTTTAGCAAATCTCTTTATTTCTTCAAATGGATTTGATTGAAAATGTCCAACCCCAAGTTGTAATGAAGATTTTGAGAATTAAACG
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             209321 812 +   3820305 AAAAAGAAAAAAA---GTTTCCTAA-------AAATTAGTTTCAGTCAGTCCTCAAAATAAATTACAGCAAAACC-AAAAGAT------CTTGGTTTAAGTGATTTTTAACCTTTTTCTACAGCTTA-GGATTTATAAGTGAAAGAAATTACAATATCAGGTGCAGTAACTTGAAAATCAGATGCAGTAACTCATGTAACTTGGTCATTAAG-TTTTTTTGTCATTAAGTTTTTATCTGTATAGTACTGAAATCAAATATGTAGATA----TCCAGTTAAATAAGTATTTACTTAGTACCCATATGTTAGATACCATTGGTCAAGGGTGAAGAAATGGACAGAAATGATGAAGGAATTGTCTTTGTGTAAGAGAAACTCAGTGAAAATGATACTGATTGACCTTTCAACAAATCCAAATATTTAAAAAGAAAAACAAAGAGGCAAAAATTAGTTAGCAGAGTGATTCTGAT-ACACAAAATGATTCTATGATGATGATGATTGTATAATAATAGCACATTTAAAATGCAACAGGAAAACTTACATCATTTAATCCT-CCTAACAAT--TG--TTACATCTGGTATAGAGGC----TTTGTTTACTTGGTT----GGTTATTCTAAGAAATGGGCTCCCACTATCTAATATATTTCAAGTCCTAGAGAG--------AAAAAATATTG-T---T--TT-----TTCTCATTAGGGAAGTCACAATGAGACACAGCACTAGAAAGGTATATACTCTACTACTTAGCATTCTG-CTATCACATAG--------------ATTTGAGCAAATCTCTTTATTTCTTCAAATGGATTTGATTGAAAATGTCCAACCCCAAGTTGTCATGAAGATTTTGAGAATTAAACA
i cebCap1.NW_016107522v1          C 0 C 0
s otoGar3.GL873742                  1964794 756 -   2232465 AA----AAGCATA----ATTCCTAA-------AAATTAATTTCAGTGAGTTCTGAAAATAAATTACAGCAAAATTAGAAAGATTTCTAGCTTTATTTAAGTGATTTTTCACCTTTTCCTGTGGTTTAAAGACTAATAAGTGTGACAACCCACACT---------------------ATCTGATGTAGTAATTCATGTAACTTTATAACTGAA-----------------TTTTTGTCTATATAGAATTAAAGTCAATTGTGTAGATAGATGCTCAGTTAAATAAATA-TTATTTATTGCCTATAAGTTAGATACCATT-CTTAAGGGTGGAAAAATGAGCAGAGATGGTGAAGGAATAGTATTTAAGCATAAGAA----AGTTAAAATGACACTGATGGGCCTATCAACAAATCCACAGATTTTTTAAA----------------AAATCAATTAACAGAGTGATTCTGAT-ACAAACAATGATTCTTTG-------TTATTCTACAACAATA-CACATTTAAAATAAAATAGAAAAAGTAATATCATCCAACCTT-CCTAACAAT--TGTATTGTAAATGGCATTGATGT----TTTGTTTGTTTGGTTAATCGGTTATTTTAAGAAATGGGCTTCCACTATCTAATGTATTTCAAATCCTAGGG---------GAAAAATCAATT-T---T--TT-----TTTTCATTGTAGAAGTCACAATGAAAGATAATTCCTGGAAGGCATATACTTCACCACCTAACATTATGCCTAGCACTTAA-------------CACTTTAGAAAATCTCATTATTTGTTCAAATGAGTTTGATTG---ATGTCCAACCCCAAGTTGTCCTAAGGATTTTGAAAATTAAAGG
i otoGar3.GL873742                C 0 C 0
s canFam3.chr35                    26142235 740 +  26524999 aa----aaaataa---atttattaAAACAACTaaataaataaaattaaaataaaaaaataaattacagtaaaa-caaaaAGAT------ACTAGCTC-AGTGATTTTCAACTCCTTTCCATTGGTTAGGGATTAATCAACAGAATAAACTAAAGC---------------------ATCTGACAGAGTAATTCAGGTACCTTAAT-----AG-----------------T-----ACTGTATAGAATTGAAATCACTCGCGAATATa----tccagttaagtaaatatttacttagtgctgctatgttaggtaccatt-gccaagcatggagaaatggacag------tgaagaaaTTG-CCTCATGGTGAAGAAACTCAGTGAAAATG-----GACTGATCTTTCAACAAATCCACAGATTTCTTAAA-AAAAGAAATAG----AAATCAGT----AGAATGATTCTGAC-ACCCAGAATGATTTTA---------TCATTCTACGT---TATCTCATTTAACATA-------AAGACTGACACTAGCCAACCCTCCCCAACAATTATG--TTACATGTGATGTTAAAGTTTTGTTTGTTTGTTTGGTT----GATTATTTTAGGAAATGGGCA--------CTAATATATTTCAAGTCCTTGAGAA-------AAAGAATAAATG-T---T--AA-----TTCTTATTGAAGAAGTCACACT-AAAGATAATACTGGAAAGGCATATACTCCACCATTTAGCATTCTGCCTACAACATAGTAAGAACTAAATACATTTTAGAAAACCTCATTATTTGTTCAAATGAACTTGATTAGACATATCTGAATCCAAATCATCCTAAGG-TTTTAACAATTAAAAG
i canFam3.chr35                   I 1061 I 29

a score=296007.000000
s hg38.chr6_GL000254v2_alt           571810 39 +   4827813 --TTCTTTGACGGTGAACCTTTGTCACTTAGTTGCAAGATC-------
s panTro5.chr6                     29544166 38 + 175400573 --TTCTTTGACGGTGAAC-TTTGTCACTTAGTTGCAAGATC-------
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29782423 38 + 173848474 --TTCTTTGACGGTGAAC-TTTGTCACTTAGTTGCAAGATC-------
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5585228 39 +   6154872 --TTCTTTGACGGTGAATCTTTGTCACTTAGTTGCAAAATC-------
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     16968 39 +     39990 --TTCTTTGATGGTGAACCTTTGTCAGTCAGTTGCAAGATC-------
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29811632 39 + 172585720 --TTCTTTGACAGTGAACCTTTGTCACTTAGTCGCAAGATC-------
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29473934 39 - 170955103 --TTCTTTGACAGTGAACCTTTGTCACTTAGTTGCAAGATC-------
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2460509 39 -   2996164 --TTCTTTGACAGTGAACCTTTGTCACTTAGTTGCAAGATC-------
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             224974 39 +    766320 --TTCTTTGACAGTGAACCTTTGTCACTTGGTTGCAAGATC-------
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28737177 39 -  71996105 --TTCTTTGACAGTGAACCTTTCTCACTTAGTTGCAAGATC-------
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             209475 39 -    352859 --TTCTTTGACAGTGAACCTTTGTCACTTGGTTGCAAGATC-------
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2366637 39 -   3067355 --TTCTTTGACAGTGAACCTTTGTCACTTAGTTACAAGATC-------
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126585346 39 - 158406734 --TTCTCTGATGGTGAACTTACGTCACTTAGTTGCAAGATC-------
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             210133 39 +   3820305 --TTCTCTGATGGTGAACTTTTGTCACTTAGTTGCAAGATC-------
i cebCap1.NW_016107522v1          C 0 C 0
s otoGar3.GL873742                  1965550 48 -   2232465 TATTCTCTGAAGACAAAGCACTGTCCATCAGTCGTAAGATCTTCCAAT
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                    26142975 29 +  26524999 I

a score=14835931.000000
s hg38.chr6_GL000254v2_alt           571849 1606 +   4827813 TCCAAAGCTCAGGATTCAATGCCTGATATCAGTGGCATCTGCATT---------------TTACAATTTTGAGAC--ATTTCATTTTTCAAAATTTCTATGAAAAGTTTATTACAATCAAATGTAATC-TTTTTAAAGTGTTAAGAGCTTTTCAAAGG-AAAAAA-TATGACTGTTCTTTGAGCTAACCTCTCTTCTAGATTAGCTTCTGAGCTGTTTCTAGATCTGCCTCTGAGCTGTTTCTAGATCCATTTGCAAGGTGGTATCAATAACTTCATGTTAGCTGGTTAGCAAAAGAAGCTATATAGTGCATCGTTGTAATACTAAGGCAT-----CATATAGAAGATGTAATGAGATTGGTATGCTAGAATCATTTTCATTGACTTTATTGAAGGTAAAGACTTTATCATTTCCATCAATTTCTCCCTC-TTTGACAATGCAAACTCTGCTCCAGAAAATGTTTATGACT-----------------------TGTTGATCACATTCAGGGATTCTATTTCTGAATAATTGCTAAA-ACGTTTTTG--AATTGAATATTAACTAATCGCAATGAAAATAAATTCATCTC-ATTT-CAGTACCTCCTTGCTGAG-GA-ATTGAGTTACTTGACACACAAATAT----ATTAGATGTCATGCATTTTCTTCCTACTGT-CTTTGGCTTCCTAAACAGAG--TCACACTTGGTATCTTCAGAGAGACTATGGTCAATTTGACTTCAATGAGTGGATTCCTTCTTATGGGGTTTTCTGATGAGCG-TAAGCTTCAGATTTTACATGCATTGGTATTTCTGGTGACATACCTGCTGGCCTTGACA----GGCAAC---CTCCTCATTATCACCATCATTACCGTGGACCGTCGTCTCCATTCCCCCATGTATTACTTTTTAAAGCACCTCTCTCTTCTGGACCTCTGCTTCATCTCTGTCACAGTCCCCCAGTCCATTGCAAATTCACTTATGGGCAACGGTTACATTTCTCTTGTTCAGTGCATTCTTCAGGTTTTCTTCTTCATAGCTCTGGCCTCATCAGAAGTGGCCATTCTCACAGTG---ATGTCTTATGACAGGTACGCAGCAATCTGTCAACCACTTCATTATGAGACTATTATGGATCCCCGTGCCTGTAGGCATGCAGTGATAGCTGTGTGGATTGCTGGGGGCCTCTCTGGGCTCATGCATGCTGCCATTAACTTCTCCATACCTCTCTGTGGGAAGAGAGTCATTCACCAATTC----TTCTGTGATGTTCCTCAGATGCTGAAACTAGCCTGTTCTT-ATGAATTCATTAATGAGATTGCACTGGCTGCATTCACAACGTCTGCAGCATTTATCTGTTTGATCTCCATTGTGCTCTCCTACATTCGCATCTTCTCTACAGTGCTGAGAATCCCATCAGCTGAGGGCCGGACCAAGGTCTTCTCCACCTGCCTACCACACCTATTTGTAGCC-ACCTTCTTTCTTTCAGCTGCAGGCTTTGAGTTTCTCAGACTGCCTTCTGATTCCTCATCGACTGTGGACCTTGTATTCTCCGTATTCTATACTGTGATACCTCCAACACTCAATCCAGTCATTTATAGCTTACGGAATGATTCCATGAAGGCAGCACTGAGGAAGATGCTGTCAAAGGAAGAGCTTCCTCAGAGAAAaatgtgct
s panTro5.chr6                     29544204 1608 + 175400573 TCCAAAGCTCAGGATTCAATGCCTGATATCAGTGGCATCTGCATT---------------TTACAATTTTGAGAC--ATTTCATTTTTCAAAATTTCTATGAAAAGTTTATTACAATCAAATGTAATC-TTTTTAAAATGTTAAGAGCTTTTCAAAGG-AAAAAAATATGACTGTTCTTTGAGCTAACCTGTCTTCTAGATTAGCTTCTGAGCTGTTTCTAGATCTGCCTCTGAGCTGTTTCTAGATCCATTTGCAAGGTGGTATCAATAACTTCATGTTAGCTGGTTAGCAAAAGAAGCTATATAGTGCATCGTTGTAATACTAAGGCAT-----CATATAGAAGATGTAATGAGATTGGTATGCTAGAATCATTTTCATTGACTTTATTGAAGGTAAAGACTTTATCATTTCCATCAATTTCTCCCTC-TTTGACAATGCAAACTCTGCTCCAGAAAATGTTTATGACT-----------------------TGTTGATCACATTCAGGGATTCTATTTCTGAATAATTGCTAAA-ACGTTTTTG--AATTGAATATTAACTAATCACAATGAAAATAAATTCATCTC-ATTT-CAGTACCTCCATGCTGAG-GA-ATTGAGTTACTTGACACACAAATAT----ATTAGATGTCATGCATTTTCTTCCTACTGTTCTTTGGCTTCCTAAACAGAG--TCACACTTGGTATCTTCAGAGAGACTATGGTCAATTTGACTTCAATGAGTGGATTCCTTCTTATGGGGTTTTCTGATGAGCG-TAAGCTTCAGATTTTACATGCATTGGTATTTCTGGTGACATACCTGCTGGCTTTGACA----GGCAAC---CTCCTCATTATCACCATCATTACTGTGGACCGTCGTCTCCATTCCCCCATGTATTACTTTTTAAAGCACCTCTCTGTTCTGGACCTCTGCTTCATCTCTGTCACAGTCCCCCAGTCCATTGCAAATTCACTTATGGGCAACGGTTACATTTCTCTTGTTCAGTGCATTCTTCAGGTTTTCTTCTTCATAGCTCTGGCCTCATCAGAAGTGGCCATTCTCACAGTG---ATGTCTTATGACAGGTACGCAGCAATCTGTCAACCACTTCATTATGAGACTATTATGGATCCCCGTGCCTGTAGGCATGCGGTGATAGCTGTGTGGATTGCTGGGGGCCTCTCTGGGCTCATGCATGCTGCCATTAACTTCTCCATACCTCTCTGTGGGAAGAGAGTCATTCACCAATTC----TTCTGTGATGTTCCTCAGATGCTGAAACTAGCCTGTTCTT-ATGAATTCATTAATGAGATTGCACTGGCTGCATTCACAACGTCTGCAGCATTTATCTGTTTGATCTCCATTGTGCTCTCCTACATTCGCATCTTCTCTACAGTGCTGAGAATCCCATCAGCTGAGGGCCGGACCAAGGTCTTCTCCACCTGCCTACCACACCTATTTGTAGCC-ACCTTCTTTCTTTCAGCTGCAGGCTTTGAGTTTCTCAGACTGCCTTCTGATTCCTCATCGACTGTGGACCTTGTATTCTCCGTATTCTATACTGTGATACCTCCAACACTCAATCCAGTCATCTATAGCTTACGGAATGATGCCATGAAGGCAGCACTGAGGAAGATGCTGTCAAAGGAAGAGCTTCCTCAGAGAAAaatgtgct
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29782461 1607 + 173848474 TCCAAAGCTCAGGATTCAATGCCTGATATCAGTGGCATCTGCATT---------------TTACAATTTTGAGAC--ATTTCATTTTTCAAAATTTCTATGAAAAGTTTATTACAATCAAATGTAATC-TTTTTAAAATGTTAAGAGCTTTTCAAAGG-AAAAAA-TATGACTGTTCTTTGAGCTAACCTGTCTTCTAGATTAGCTTCTGAGCTGTTTCTAGATCTGCCTCTGAGCTGTTTCTAGATCCATTTGCAAGGTGGTATCAATAACTTCATGTTAGCTGGTTAGCAAAAGAAGCTATATAGTGCATCGTTGTAATACTAAGGCAT-----CATATAGAAGATGTAATGAGATTGGTATGCTAGAATCATTTTCATTGACTTTATTGAAGGTAAAGACTTTATCATTTCCATCAATTTCTCCCTC-TTTGACAATGCAAACTCTGCTCCAGAAAATGTTTGTGACT-----------------------TGTTGATCACATTCAGGGATTCTATTTCTGAATAATTGCTAAA-ACGTTTTTG--AATTGAATATTAACTAATCACAATGAAAATAAATTCATCTC-ATTT-CAGTACCTCCATGCTGAG-GA-ATTGAGTTACTTGACACACAAATAT----ATTAGATGTCATGCATTTTCTTCCTACTGTTCTTTGGCTTCCTAAACAGAG--TCACACTTGGTATCTTCAGAGAGACTATGGTCAATTTGACTTCAATGAGTGGATTCCTTCTTATGGGGTTTTCTGATGAGCG-TAAGCTTCAGATTTTACATGCATTGGTATTTCTGGTGACATACCTGCTGGCTTTGACA----GGCAAC---CTCCTCATTATCACCATCATTACCGTGGACCGTCGTCTCCATTCCCCCATGTATTACTTTTTAAAGCACCTCTCTGTTCTGGACCTCTGCTTCATCTCTGTCACAGTCCCCCAGTCCATTGCAAATTCACTTATGGGCAACGGTTACATTTCTCTTGTTCAGTGCATTCTTCAGGTTTTCTTCTTCATAGCTCTGGCCTCATCAGAAGTGGCCATTCTCACAGTG---ATGTCTTATGACAGGTACGCAGCAATCTGTCAACCACTTCATTATGAGACTATTATGGATCCCCGTGCCTGTAGGCATGCGGTGATAGCTGTGTGGATTGCTGGGGGCCTCTCTGGGCTCATGCATGCTGCCATTAACTTCTCCATACCTCTCTGTGGGAAGAGAGTCATTCACCAATTC----TTCTGTGATGTTCCTCAGATGCTGAAACTTGCCTGTTCTT-ATGAATTCATTAATGAGATTGCACTGGCTGCATTCACAACGTCTGCAGCATTTATCTGTTTGATCTCCATTGTGCTCTCCTACATTCTCATCTTCTCTACAGTGCTGAGAATCCCATCAGCTGAGGGCCGGACCAAGGTCTTCTCCACCTGCCTACCACACCTATTTGTAGCC-ACCTTCTTTCTTTCAGCTGCAGGCTTTGAGTTTCTCAGACTGCCTTCTGATTCCTCATCGACTGTGGACCTTGTATTCTCCGTATTCTATACTGTGATACCTCCAACACTCAATCCAGTCATCTATAGCTTACGGAATGATGCCATGAAGGCAGCACTGAGGAAGATGCTGTCAAAGGAAGAGCTTCCTCAGAGAAAaatgtgct
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5585267 1584 +   6154872 TCCAAAGCTCAGGATTCAATGCCTGATATCAGTGACATCTGCATT---------------TTACAATTTTGAGAC--ATTTCATTTTTCAGAATTTCTATGAAAAGTTTATTACAATCAAATGTAATC-TTTTTAAAATGTTAAGAGCTTTTCAAAGG-AAAAAA-TATGATTGTTCTTTGAGCTAACCTCTCTTCTAGATTAGCT-----------------------TCTGAGCTGTTTCTAGATCCATTTGCAAGGTGGTATCAATAACTTCATGTTAGCTGGTTAGCAAAAGAAGCTATATAGTGCATCATTGTAATACTAAGGCAT-----CATATAGAAGATGTAATGAGATTGGTATGCTAGAATCATTTTCATTGACTTTATTGAAGGTAAAGACTTTATCATTTCCATCAATTTCTCCCTC-TTTGACAATGCAAACTCTGCTCCAGAAAATGTTTATGACT-----------------------TGTTGATCACATTCAGGGATTCTATTTCTGAATAATTGCTAAA-ACGTTTTTG--AATTGAATATTAACTAATCACAATGAAAATGAATTCATCTC-ATTT-CAGTACCTCCATGCTGAG-GA-ATTGAGTTACTTGACACACAAATAT----ATTAGATGTCATGCATTTTCTTCCTACTGTTCTTTGGCTTCCTAAACAGAG--TCACACTTGGTATCTTCAGAGAGACTATGGTCAATTTGACTTCAATGAGTGGATTCCTTCTTATGGGGTTTTCTGATGAGCG-TAAGCTTCAGATTTTACATGCATTGGTATTTCTGGTGACATACCTGCTGGCCTTGACA----GGCAAC---CTCCTCATTATCGCCATTATTACCGTGGACCGTCGTCTCCATTCCCCCATGTATTACTTTTTAAAGCACCTCTCTCTTCTGGACCTCTGCTTCATCTCTGTCACAGTCCCCCAGTCCATTGCAAATTCACTTATGGGCAACGGTTACATTTCTCTTGTTCAGTGCATTCTTCAGGTTTTCTTCTTCATAGCTCTGGCCTCATCAGAAGTGGCCATTCTCACAGTG---ATGTCTTATGACAGGTACGCAGCAATCTGTCAACCACTTCATTATGAGACTATTATGGATCCCCGTGCCTGTAGGCATGCAGTGATAGCTGTGTGGATTGCTGGGGGCCTCTCTGGGCTCATGCATGCTGCCATTAACTTCTCCATACCTCTCTGTGGGAAGAGAGTCATTCACCAATTC----TTCTGTGATGTTCCTCAGATGCTGAAACTAGCCTGTTCTT-ATGAATTCATTAATGAGATTGCACTGGCTGCATTCACAACATCTGCAGCATTTATCTGTTTGATCTCCATTGTTCTCTCCTACATTCGCATCTTCTCTACAGTGCTGAGAATCCCATCATCTGAGGGCCGGACCAAGGTCTTCTCCACCTGCCTACCACACCTATTTGTAGCC-ACCTTCTTTCTTTCAGCTGCAGGCTTTGAGTTTCTCAGACTGCCTTCTGATTCCTCATCGACTGTGGACCTTGTATTCTCCGTATTCTATACTGTGATACCTCCAACACTCAATCCAGTCATCTATAGCTTACGGAATGATGCCATGAAGGCAGCACTGAGGAAGATGCTGTCAAAGGAAGAGCTTCCTCAGAGAAAaatgtgct
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     17007 1605 +     39990 TCCAAAGCTCAGGATTCAATGCCTGATATCAGTGGCATCTGCATT---------------TTACAATTTTGAGAC--ATTTCATTTTTCAAAATTTCTATGAAAAGTTTATTACAAGCAAATGTAATC-TTTTTAAAATGTTAAGAGCTTTTCAGAGG-AAAAAA-TATGACTGTTCTTTGAGCTAACCTCTCTTCTAGATTAGCTTCTGAGCTGTTTCTTGATCTGCCTCTGAGCTGTTTCTAGATCCATTTGCAAGGTGGTATCAATAACTTCATGTTAGCTGGTTAGCAAAAGAAGCTATATAGTGCATCATTGTAATACTAAGGCAT-----CATATAGAAGATGTAATGAGATTGGTATGCTAGTATCATTTTCATTGACTTTATTGAAGGTAAAGACTTTATCATTTCCATCCATTTCTCCCTC-TTTGACAATGCAAACTCTACTCCAGAAAATGTTTATGACT-----------------------TGTTGATCACATTTAGGGATTCTATTTCTGAATAATTGCTAAA-ACGTTTTTG--AACTGAATATTAACTAATCATAATGAAAATAAATTCATCTC-ATTT-CAGTATCTCCATGCTGAG-GA-ATTGAGTTACTTGACACACAAATAT----ATTAGATGTCATGCATTTTCTTCCTACTGTTCTTTGGCTTCCTAAACAGAG--TCGCACTTGGTATCTTC--AGAGACTATGGTCAATTTGACTTCAATGAGTGGATTCCTTCTTATGGGGTTTTCTGATGAGCG-TAAGCTTCAGATTTTACATGCATTGCTGTTTCTGGTGACATACCTGCTGGCCTTGACA----GGCAAC---CTCCTCATTATCACCATCATTACCTTGGACCATCGTCTCCATTCCCCCATGTATTACTTTTTAAAGCACCTCTCTTTTCTGGACCTCTGCTTCATCTCTGTCACAGTCCCCCAGTCCATTGCAAATTCACTTACGGGCAACGGTTACATTTCTCTTGTTCAGTGCATTCTTCAGGTTTTCTTCTTCATAGCTTTGGCCTCATCAGAAGTGGCCATTCTCACAGTG---ATGTCTTATGACAGGTACGCAGCAATCTGTCAACCACTTCACTATGAGACTATTATGGATCCCCGTGCCTGTAGGCATGCAGTGATAGCTGTGTGGATTGCTGGGGGCCTCTCTGGGCTCATGCATGCTGCCATTAACTTCTCCATACCTCTCTGTGGGAAGAGAGTCATTCACCAATTC----TTCTGTGATGTTCCTCAGATGCTGAAACTAGCCTGTTCTT-ATGAATTCATTAATGAGATTGTACTGGCTGCATTCACAACGTCTACAGCATTTATCTGTTTGATCTCCATTGTGCTCTCCTACATTCGCATCTTCTCTACAGTGCTGAGAATCCCATCAGCTGAGGGCCGGACCAAGATCTTCTCCACCTGCCTACCACACCTATTTGTAGTC-ACCTTCTTTCTTTCAGCTGCAGGCTTTGAGTTTCTCAGACTGCCTTCTGATTCCTCATCAACTATGGACCTTGTATTCTCCGTGTTCTATACTGTGATACCTCCAACACTCAATCCAGTCATCTATAGCTTACGGAATGACGCCATGAAGGCAGCACTGAGGAAGATGCTCTCAAAGGAAGAGCTTCCTCAgagaaagatgtgct
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29811671 1588 + 172585720 TCCAAAGCTCAGGATTCAATGCCTGATATCAGTGGCATCTGCAGT---------------TTACAATTTTGAGAC--ATTCCATTTTTCAAAATTTCTATGGAAAGTTTATTACAATCAAATGTAATC-TTTTTTAGATGTTAAGAGCTTTTCAGAGG-AAAAAA-TATGACTGTTATTTGAGCGAACCTCTCTTCTAGATTAGCTTCTGAGCTGTTTCTAGATGTGCCTCTGAGTTG------------------AGGTGGTATCAATAACTTCATGTTAGCTGGTTAGCAAATGAAGCTGTATAGTGCATAACTATAATACTAAGGCAT-----CACATAGAAGATGTAATGAGATTGGTATGCTAATATCATTTTCATTGACTTTGTTGAAGGTAAAGATTTTATCATTTCCATCAATTTCTCCCTCTTTTGACAACGCAAACTCTGCTCCAGAAAACGTTTATGACT-----------------------TGTTGATCACATTTAGGGATTCTATTTCTGAATAATTGCTAAA---TTTTTTA--AATTGAATATTAACTAATCACAATGGAGATAAATTCATCTC-ATTT-CAGTACCTCCATGCTGAG-GA-ACTGAGTTACTTGACATACAAATAT----ATTAGATGTCATGCATTTTCTTCCTACTGTTCTTTGGCTTCCTAAACAGAG--TCACACTTGGTATCTTCAGAGAGACTATGGTCAATTTGACTGCAATGAGTGGATTCCTCCTCATGGGGTTTTCTGATGAGCG-TAAGCTTCAGATTTTACATGCATTGCTGTTTCTGGTGACATACCTGCTGGCCTTGACA----GGCAAC---CTCCTCATTATCACCGTCATTACCTTGGACCATCGTCTCCATTCCCCCATGTATTACTTTTTAAAGCACCTCTCTCTTCTGGACCTCTGCTTCATCTCTGTCACAGTCCCCCAGTCCATTGCAAATTCACTTATGGGCAACGGTTACATTTCTCTTGTTCAGTGCATTCTTCAGGTTTTCTTCTTCATAGCTCTGGCCTCATCAGAAGTGGCCATTCTCACAGTG---ATGTCTTATGACCGGTACGCAGCGATCTGTCAACCACTTCACTATGAGACCACTATGGATCCCAGTGCCTGTAGGCATGCAGTGATAGCTGTGTGGATTGCTGGGGGCCTCTCTGGGCTCATGCATGCTGCCATTAACTTCTCCATACCTCTCTGTGGGAAGAGAGTCATTCAGCAATTC----TTCTGTGATGTTCCTCAGATGCTGAAACTAGCCTGTTCTT-ATGAATCCATTAACGAGATTGCACTGGCTGCATTCACGACATCTACAGCATTTATCTGTTTGATATCCATTGTGCTCTCCTACATTCGCATCTTCTCTACAGTGCTGAGAATCCCATCAGCTGAGGGCCGGACCAAGGTCTTCTCCACCTGCCTACCACACCTATTTGTAGTC-ACCTTCTTTCTTTCAGCTGCAGGCTTTGAGTTTCTCAGACTGCCTTCTGATTCCTCATCGACTATGGACCTTGTATTCTCCATATTCTATACTGTGATACCTCCAACACTCAATCCAGTCATCTATAGCTTACGGAATGACGCCATGAAGGCAGCACTGAGGAAGATGTTGTCAAAGGAAGAGCTTCCTCAgagaaagatgtgtt
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29473973 1588 - 170955103 TCCAAAGCTCAGGATTCAATGCCTGATATCAGTGGCATCTGCAGT---------------TTACAATTTTGAGAC--ATTCCATTTTTCAAAATTTCTATGGAAAGTTTATTACAATCAAATGTAATC-TTTTTTAGATGTTAAGAGCTTTTCAGAGG-AAAAAA-TATGACTGTTCTTTGAGCGAACCTCTCTTCTAGATTAGCTTCTGAGCTGTTTCTAGATGTGCCTCTGAGTTG------------------AGGTGGTATCAATAACTTCATGTTAGCTGGTTAGCAAATGAAGCTGTATAGTGCATAACTATAATACTAAGGCAT-----CACATAGAAGATGTAATGAGATTGGTATGCTAATATCATTTTCATTGACTTTGTTGAAGGTAAAGATTTTATCATTTCCATCAATTTCTCCCTCTTTTGACAACGCAAACTCTGCTCCAGAAAACGTTTATGACT-----------------------TGTTGATCACATTTAGGGATTCTATTTCTGAATAATTGCTAAA---TTTTTTT--AATTGAATATTAACTAATCACAATGGAGATAAATTCATCTC-ATTT-CAGTACCTCCATGCTGAG-GA-ACTGAGTTACTTGACATTCAAATAT----ATTAGATGTCATGCATTTTCTTCCTACTGTTCTTTGGCTTCCTAAACAGAG--TCACACTTGGTATCTTCAGAGAGACTATGGTCAATTTGACTGCAATGAGTGGATTCCTCCTCATGGGGTTTTCTGATGAGCG-TAAGCTTCAGATTTTACATGCATTGCTGTTTCTGGTGACATACCTGCTGGCCTTGACA----GGCAAC---CTCCTCATTATCACCGTCATTACCTTGGACCATCGTCTCCATTCCCCCATGTATTACTTTTTAAAGCACCTCTCTCTTCTGGACCTCTGCTTCATCTCTGTCACAGTCCCCCAGTCCATTGCAAATTCACTCATGGGCAATGGTTACATTTCTCTTGTTCAGTGCATTCTTCAGGTTTTCTTCTTCATAGCTCTGGCCTCATCAGAAGTGGCCATTCTCACAGTG---ATGTCTTATGACCGGTACGCAGCGATCTGTCAACCACTTCACTATGAGACCACTATGGATCCCAGTGCCTGTAGGCATGCAGTGATAGCTGTGTGGATTGCTGGGGGCCTCTCTGGGCTCATGCATGCTGCCATTAACTTCTCCATACCTCTCTGTGGGAAGAGAGTCATTCAGCAATTC----TTCTGTGATGTTCCTCAGATGCTGAAACTAGCCTGTTCTT-ATGAATCCATTAACGAGATTGCACTGGCTGCATTCACGACATCTACAGCATTTATCTGTTTGATATCCATTGTGCTCTCCTACATTCGCATCTTCTCTACAGTGCTGAGAATCCCATCAGCTGAGGGCCGGACCAAGGTCTTCTCCACCTGCCTACCACACCTATTTGTAGTC-ACCTTCTTTCTTTCAGCTGCAGGCTTTGAGTTTCTCAGACTGCCTTCTGATTCCTCATCGACTATGGACCTTGTATTCTCCATATTCTATACTGTGATACCTCCAACACTCAATCCAGTCATCTATAGCTTACGGAATGACGCCATGAAGGCAGCACTGAGGAAGATGTTGTCAAAGGAAGAGCTTCCTCAgagaaagatgtgtt
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2460548 1587 -   2996164 TCCAAAGCTCAGGATTCAATGCCTGATATCAGTGGCATCTGCAGT---------------TTACAATTTTGAGAC--ATTCCATTTTTCAAAATTTCTATGGAAAGTTTATTACAATCAAATGTAATC-TTTCTTAGATGTTAAGAGCTTTTCAGAGG-AAAAAA-TATGACTGTTCTTTGAGCGAACCTCTCTTCTAGATTAGCTTCTGAGCTGTTTCTAGATGTGCCTCTGAGTTG------------------AGGTGGTATCAATAACTTCATGTTAGCTGGTTAGCAAATGAAGCTGTATAGTGCATAACTATAATACTAAGGCAT-----CACATAGAAGATGTAATGAGATTGGTATGCTAATATCATTTTCATTGACTTTGTTGAAGGTAAAGATTTTATCATTTCCATCAATTTCTCCCTCTTTTGACAACGCAAACTCTGCTCCAGAAAACGTTTATGACT-----------------------TGTTGATCACATTTAGGGATTCTATTTCTGAATAATTGCTAAA----TTTTTT--AATTGAATATTAACTAATCACAATGGAGATAAATTCATCTC-ATTT-CAGTACCTCCATGCTGAG-GA-ACTGAGTTACTTGACATACAAATAT----ATTAGATGTCATGCATTTTCTTCCTACTGTTCTTTGGCTTCCTAAACAGAG--TCACACTTGGTATCTTCAGAGAGACTATGGTCAATTTGACTGCAATGAGTGGATTCCTCCTCATGGGGTTTTCTGATGAGCG-TAAGCTTCAGATTTTACATGCATTGCTGTTTCTGGTGACATACCTGCTGGCCTTGACA----GGCAAC---CTCCTCATTATCACCGTCATTACCTTGGACCATCGTCTCCATTCCCCCATGTATTACTTTTTAAAGCACCTCTCTCTTCTGGACCTCTGCTTCATCTCTGTCACAGTCCCCCAGTCCATTGCAAATTCACTCATGGGCAATGGTTACATTTCTCTTGTTCAGTGCATTCTTCAGGTTTTCTTCTTCATAGCTCTGGCCTCATCAGAAGTGGCCATTCTCACAGTG---ATGTCTTATGACCGGTACGCAGCGATCTGTCAACCACTTCACTATGAGACCACTATGGATCCCAGTGCCTGTAGGCATGCAGTGATAGCTGTGTGGATTGCTGGGGGCCTCTCTGGGCTCATGCATGCTGCCATTAACTTCTCCATACCTCTCTGTGGGAAGAGAGTCATTCACCAATTC----TTCTGTGATGTTCCTCAGATGCTGAAACTAGCCTGTTCTT-ATGAATCCATTAACGAGATTGCACTGGCTGCGTTCACGACGTCTACAGCATTTATCTGTTTGATATCCATTGTGCTCTCCTACATTCGCATCTTCTCTACAGTGCTGAGAATCCCATCAGCTGAGGGCCGGACCAAGGTCTTCTCCACCTGCCTACCACACCTATTTGTAGTC-ACCTTCTTTCTTTCAGCTGCAGGCTTTGAGTTTCTCAGACTGCCTTCTGATTCCTCATCGACTATGGACCTTGTATTCTCCATATTCTATACTGTGATACCTCCGACACTCAATCCAGTCATCTATAGCTTACGGAATGACGCCATGAAGGCAGCACTGAGGAAGATGTTGTCAAAGGAAGAGCTTCCTCAgagaaagatgtgtt
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             225013 1588 +    766320 TCCAAAGCTCAGGATTCAATGCCTGATATCAGTGGCATCTGCAGT---------------TTACAATTTTGAGAC--ATTTCATTTTTCAAAATTTCTATGGAAAGTTTATTACAATCAAATGTAATC-TTTTTTAGATGTTAAGAGCTTTTCAGAGG-AAAAAA-TATGACTGTTCTTTGAGCGAACCTCTCTTCTAGATTAGCTTCTGAGCTGTTTCTAGATCTGCCTCTGAGTTG------------------AGGTGGTATCAATAACTTCATGTTAGCTGGTTAGCAAATGAAGCTATATAGTGCATAACTATAATACTAAGGCAT-----CATATAGAAGATGTAATGAGATTGGTATGCTAATATCATTTTCATTGACTTTGTTGAAGGTAAAGATTTTATCATTTCCATCAATTTCTCCCTCTTTTGACAACGCAAATTCTGCTCCAGAAAACGTTTATGACT-----------------------TGTTGATCACATTTAGGGATTCTATTTCTGAATAATTGCTAAA---TTTTTTA--AATTGAATATTAACTAATCACAGTGGAGATAAATTCATCTC-ATTT-CAGTACGTCTATGCTGAG-GA-ACTGAGTTACTTGACATACAAATAT----ATTAGATGTCATGCATTTTCTTCCTAATGTTCTTTGGCTTCCTAAACAGAG--TCACACTTGGTATCTTCAGAGAGACTATGGTCAATTTGACTGCAATGAATGGATTCCTCCTCATGGGGTTTTCTGATGAGCG-TAAGCTTCAGATTTTACATGCATTGCTGTTTCTGGTGACATACCTGCTGGCCTTGACA----GGCAAC---CTCCTCATTATCACCGTCATTACCTTGGACCATCGTCTCCATTCCCCCATGTATTACTTTTTAAAGCACCTCTCTCTTCTGGACCTCTGCTTCATCTCTGTCACAGTCCCCCAGTCCATTGCAAATTCACTCATGGGCAATGGTTACATTTCTCTTGTTCAGTGCATTCTCCAGGTTTTCTTCTTCATAGCTCTGGCCTCATCAGAAGTGGCCATTCTCACAGTG---ATGTCTTATGACCGGTACGCAGCGATCTGTCAACCACTTCACTATGAGACCACTATGGATCCCAGTGCCTGTAGGCATGCAGTGATAGCTGTGTGGATTGCTGGGGGCCTCTCTGGGCTCATGCATGCTGCCATTAACTTCTCCATACCTCTCTGTGGGAAGAGAGTCATTCACCAATTC----TTCTGTGATGTTCCTCAGATGCTGAAACTAGCCTGTTCTT-ATGAATCCATAAACGAGATTGCACTGGCTGCATTCACGACGTCTACAGCATTTATCTGTTTGATATCCATTGTGCTCTCCTACATTCGCATCTTCTCTACAGTGCTGAGAATCCCATCAGCTGAGGGCCGGACCAAGGTCTTCTCCACCTGCCTACCACACCTATTTGTAGTC-ACCTTCTTTCTTTCAGCTGCAGGCTTTGAGTTTCTCAGACTGCCTTCTGATTCCTCATCGACTATGGACCTTGTATTCTCCATATTCTATACTGTGATACCTCCAACCCTCAATCCAGTCATCTATAGCTTACGGAATGACGCCATGAAGGCAGCACTGAGGAAGATGTTGTTAAAGGAAGAGCTTCCTCAgagaaagatgtgtt
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28737216 1586 -  71996105 TCCAAAGCTCAGGATTCAATGCCTGATAGCAGTGGCATCTGCAGT---------------TTACAATTTTGAGAC--GTTTCATTTTTCAAAATTTCTATGGAAAGTTTATTACAATAAAATGTAATC-TTTTAAAGATTTTAAGAGCTTTTCAGAGG-AAAAAA-TATGACTGTTCTTTGAGCGAACCTCTCTTCTAGATTAGCTTCTGAGCTGTTTCTAGATCTGCCTCTGAGTTG------------------AGGTGGTATCAATAACTTCATGTTAGCTGGTTAGCAAATGAAGCTGTATAGTGCATAACTATAATACTAAGGCAT-----CATATAGAAGATGTAATGAGATTGGTATGCTAATATCATTTTCATTGACTTTGTTGAAGGTAAAGATTTTATCATTTCCATCAATTTCTCCCTCTTTTGACAACGCAAACTCTGCTCCAGAAAACGTTTATGACT-----------------------TGTTGATCACATTTAGGGATTCTATTTCTGAATAATTGCTAAT---TTTTTT----ATTGAATATTAACTAATCACAATGGAGATAAATTCATCTC-ATTT-CAGTACCTCCATGCTGAG-GA-ATTGAGTTACTTGACATACAAATAT----ATTAGATGTCATGCATTTTCTTCCTACTGTTCTTTGGCTTCCTAAACAGAG--CCACACTTGGTATCTTCAGAGAGACTATGGTCAATTTGACTGCAATGAGTGGATTCCTCCTCATGGGGTTTTCTGATGAGCG-TAAGCTTCAGATTTTACATGCATTGCTGTTTCTGGTGACATACCTGCTGGCCTTGACA----GGCAAC---CTCCTCATTATCACCGTCATTACCTTGGACCATCGTCTCCATTCACCCATGTATTACTTTTTAAAGCACCTCTCTCTTCTGGACCTCTGCTTCATCTCTGTCACAGTCCCCCAGTCCATTGCAAATTCACTTATGGGCAATGGTTACATTTCTCTTGTTCAGTGCATTCTTCAGGTTTTCTTCTTCATAGCTCTGGCCTCATCAGAAGTGGCCATTCTCACAGTG---ATGTCTTATGACCGGTACGCAGCGATCTGTCAACCACTTCACTATGAGACCACTATGGATCCCAGTGCCTGTAGGCATGCAGTGATAGCTGTGTGGATTGCTGGGGGCCTCTCTGGGCTCATGCATGCTGCCATTAGCTTCTCCATTCCTCTCTGTGGGAAGAGAGTCATTCACCAATTC----TTCTGTGATGTTCCTCAGATGCTGAAACTAGCCTGTTCTT-ATGAATCCATTAACGAGATTGCACTGGCTGCATTCACAACGTCTACAGCATTTATCTGTTTGATATCCATTGTGCTCTCCTACATTCGCATCTTCTCTACAGTGCTGAGAATCCCATCAGCTGAGGGGCGGACCAAGGTCTTCTCCACCTGCCTACCACACCTATTTGTAGTC-ACCTTCTTTCTTTCAGCTGCAGGCTTTGAGTTTCTCAGGCTGCCTTCTGATTCCTCATCGACTATGGACCTTGTATTCTCCATATTCTATACTGTGATACCTCCAACACTCAATCCAGTCATCTATAGCTTACGGAATGACGCCATGAAGGCAGCGCTGAGGAAGATGTTGTCAAAGGAAGAGCTTCCTCAGAGAAAGATGTGTT
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             209514 1588 -    352859 TCCAAAGCTCAGGATTCAATGCCTGATATCAGTGGCATCTGTAGT---------------TTACAATTTTGAGAC--ATTTCATTTTTCAAAATTTCTATGGAAAGTTTATTACAATCAAATGTAATC-TTTTTTAGATGTTAAGAGCTTTTCAGAGG-AAAAAT-TATGACTGTTCTTTGAGCGAACCTCTCTTCTAGATTAGCTTCTGAGCTGTTTCTAGATCTGCCTCTGAGTTG------------------AGGTGGTATCAGTAACTTCATGTTAGCTGGTTAGCAAATGAAGCTATATAGTGCATAACTATAATACTAAGGCAT-----CATATAGAAGATGTAATGAGATTGGTATGCTAATATCATTTTCATTGACTTTGTTGAAGGTAAAGATTTTATCATTTCCATCAATTTCTCCCTCTTTTGACAACGCAAATTCTGCTCCAGAAAATGTTTATGACT-----------------------TGTTGATCACATTTAGGGATTCTATTTCTGAATAATTGCTAAA---TTTTTTA--AATTGAATATTAACTAATCACAATGGAGATAAATTCATCTC-ATTT-CAGTACCTCTATGCTGAG-GA-ACTGAGTTACTTGACATACAAATAT----ATTAGATGTCATGCATTTTCTTCCTAATGTTCTTTGGCTTCCTAAACAGAG--TCACACTTGCTATCTTCAGAGAGACTATGGTCAATTTGACTGCAATGAATGGATTCCTCCTCATGGGGTTTTCTGATGAGCG-TAAGCTTCAGATTTTACATGCATTGCTGTTTCTGGTGACATACCTACTGGCCTTGACA----GGCAAC---CTCCTCATTGTCACTGTCATTACCTTGGACCATCGTCTCCATTCCCCCATGTATTACTTTTTAAAGCACCTCTCTCTTCTGGACCTCTGCTTCATCTCTGTCACAGTCCCCCAGTCCATTGCAAATTCACTCATGGGCAACGGTTACATTTCTCTTGTTCAGTGCATTCTTCAGGTTTTCTTCTTCATAGCTCTGGCCTCATCAGAAGTGGCCATTCTCACAGTG---ATGTCTTATGACCGGTACGCAGCGATCTGTCAACCACTTCACTATGAGACCACTATGGATCCCAGTGCCTGTAGGCATGCAGTGATAGCTGTGTGGATTGCTGGGGGCCTCTCTGGGCTCATGCATGCTGCCATTAACTTCTCCATACCTCTCTGTGGGAAGAGAGTCATTCACCAATTC----TTCTGTGATGTTCCTCAGATGCTGAAACTAGCCTGTTCTT-ATGAATCCATTAACGAGATTGCACTGGCTGCATTCACGACGTCTACAGCATTTATCTGTTTGATATCCATTGTGCTCTCCTACATTCGCATCTTCTCTACAGTGCTGAGAATCCCATCAGCTGAGGGCCGGACCAAGGTCTTCTCCACCTGCCTACCACACCTATTTGTAGTC-ACCTTCTTTCTTTCAGCTGCAGGCTTTGAGTTTCTCAGACTGCCTTCTGATTCCTCATCGACTATGGACCTTGTATTCTCCATATTCTATACTGTGATACCTCCAACCCTCAATCCAGTCATCTATAGCTTACGGAATGACGCCATGAAGGCAGCACTGAGGAAGATGTTGTTAAAGGAAGAGCTTCCTCAgagaaagatgtgtt
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2366676 1592 -   3067355 TCCAAAGTTCAGGATTCAATGCCTGATATCAGTGGCATCTGCATT---------------TTACGATTTTGAGAC--ATTTCATTTTTCAAAATTTCTATGGAAAGCTTATTACAATCAAATGTAATC-TTTTTTAGATGTTAAGAGCTTTTCAGAGG-AAAAAA-TA----AGTTCTTTGAGCTAACCTCTCTTCTAGATTAGCTTCTGAGCTGTTTCTATATCTGCCTCTGAGTTGTTTCTAGATGCATTTGCAAGGTGGTATCAATAACTTCATATTAGCTGGTTAGCAAATGAAGCTATACAGTGCATAACTATAATACTAAGGCAT-----CATATAGAAGATGTAATGAGATTGGTA------------TTTCATTGACTTTGTTGAAGGTAAAGATTTTATCATTTCCATCAATTTCTCCCTCTTTTGACAACGCAAACTCTGCTCCAGAAAATGTTTATGACT-----------------------TGTTGATCACATTTAGGGATTCTATTTCTGAATAATTGCTAAA---TTTTTTTTGAATTGAATATTAACTAATCACAATGGAGATAAATTCATCTC-ATTT-CAGTACCTCCATGCTGAG-GA-ATTGAGTTACTTGACATACAAATAT----ATTAGATGTCATGCATTTTCTTCCTACTGTTCTTTGGCTTCCTAAACAGAG--TCACACTTGGTATCTTCAGAGAGACTATGGTCAATTTGACTGCAATGAATGGATTCCTCCTCATGGGCTTTTCTGATGAGCG-TAAGCTTCAGATTTTACATGCATTGCTGTTTCTGGTGACATACCTGCTGGCCTTGACA----GGCAAC---CTTCTCATTATCACCGTCATTACCTTGGACCATCGTCTCCATTCCCCCATGTATTACTTTTTAAAGCACCTCTCTCTTCTGGACCTCTGCTTCATCTCTGTCACAGTCCCCCAGTCCATTGCAAATTCACTTATGGGCAATGGTTATATTTCTCTTGTTCAGTGCATTCTTCAGGTTTTCTTCTTCATAGCTCTGGCCTCATCAGAAGTGGCCATTCTCACAGTG---ATGTCTTATGACCGGTACGCAGCGATCTGTCAACCACTTCACTATGAGACCACTATGGATCCCAGTGCCTGTAGGCATGCAGTGATAGCTGTGTGGATTGCTGGCGGCCTCTCTGGGCTCATGCATGCTGCCATTAACTTCTCCATACCTCTCTGTGGGAAGAGAGTCATTCACCAATTC----TTCTGTGATGTTCCTCAGATGCTGAAACTAGCCTGTTCTT-ACGAATCCGTTAACGAGATTGCACTGGCTGCATTCACAACGTCTACAGCATTTATCTGTTTGATATCCATTGTGCTCTCCTACATTCGCATCTTCTCTACAGCGCTGAGAATCCCATCAGCTGAGGGCCGGACGAAGGTCTTCTCCACCTGCCTACCACACCTATTTGTAGTC-ACCTTCTTTCTTTCAGCTGCAGGCTTTGAGTTTCTCAGACTGCCTTCTGATTCCTCATCGACTATGGACCTTGTATTCTCCATATTCTATACTGTGATACCTCCAACACTCAACCCAGTTATCTATAGCTTACGGAATGACGCCATGAAGGCAGCACTGAGGAAGATGCTGTCAAAGGAAGAGCTTCCTCAgagaaagatgtgtt
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126585385 1558 - 158406734 TCCAAAGCTCAGGATTCAATGCCTGATATCCGTGGCATC------------------------------TGAGCC--ATTTTATTTTTCAAAATTTCTATGGAAACTTTATTACAACCAAATGTAATC-TTTTTAAAATGTTAAGAGCTTTTCAGAGG-AAAGAA-TATGACTCTTCTTTGAGCTAACCACTCTTCCAGAGTTGCCTCCGAGCTGTTTCTAGATC-----------------------CATTTGCAAGGTGATATCAATAACTTCTTATTAGCTGGTTAGCAAAAGAAGCTATTTAGTGCATCATTGTAATACGAAGGCAT-----CGCAT---AGATGTAATGAGATTGGTATGCCAGGATGCTTTTCTTTGACTTTATTGAAGGTAAAGACGTTATCATTTCCATCCATTTCTCCCTC-TTTGACAACCCAAACTCTGCTCCAGAAAATGTTCATGACT-----------------------TGTTTATCATATTTAGGGATTCTATTTCTGAATAACTGCGAAA-ACTTTTTTG--AATTGATTATTAACTAATCACAGTGGAGATAAATTCATCTC-ACGT-CAGTCCCTCCATGCTGAG-GA-ATTGAGCTACTTGACACAGAGATAT----ATTAGACGTCATGCATTCTCTTCCTACTGTT-TTTGGCTTCCTAAACAGAG--TCACACTTGGTATCTTCAAAGAGACTATGGTCAGCTTGACTTCGGTGAGTGGATTCCTCCTCATGGGGTTTTCTGATGAGCGTTAAGCTTCAGATTTTTCATGCATTGCTGTTTTTGATGACACACCTGCTGGCCTTGACAGTATGATAATGACCTCTTCATTATCACTGTAATTACCTTGGAGCATGGTCTCTACTCCCCCATGTATTGCTTTTTAAAGCACTTCTCTCTTCCGGGCCTCTGTTTCATCTCTGTCACAGTACCCCAGTCCATTGCAAATTCACCTATCGGCAACAGTTACATTTCTCTTGTTCAGTG---------------------CATAGCTCTGGCCTCATCAGAAGTAGCCATTCTCACAGTGTCATTCTCTTATGACAGGTACACAGCGATCGGTCAGCCACTTCTCTGTGAGGTCGTTATGGATCTCAGTGCCTGTAGGCATGCAGTGATAGCTGTGTGGATTGCGGGGGGCCTCTCTGGGCTCATACATGCTTACATTAACTTCTCCAAACCTCTCTGTGGG--GAGAGCCATTCACCGATTCACCAACCTGTGATGTTCCTCAGCTGCTGAAACGAACCTGTTTTTAAGGAATTCATTCATGAGATTGCACTGGCTGGGCTCACAACCTTTACAGAGTTTATCTGTTTGATCTCCATTGTGCTCTCCCACGTTCACATCTCCTCTGCAGTGCTGAGAATCCCATCAGCTGAGGACCTGACCAAGGGCTTCGCCACCTGCCCACCACGCCTGTTTGTAGTT-ACCTTCTTTTTTTCAGCTGCAGGTTTTGAGTTTCTCAGACCCCCTTCGGATTCCTCTTCGGCTATGGACCTCATGTTCTCTGTATTCTACACTGTGATACCTCCAGCATTCAATCCAGTCATCTATAGCTTACGGAATGCCACCATGAAGGCAGCACTGAGGAAGGTGCTGTCAAAGGAAGGGCTTGCTCAgagaaagatgtgtt
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             210172 1555 +   3820305 TCCAAAGCTCAGAATTCAATGCCTGATATCCGTGGCATC------------------------------TGAGAC--ATTTTATTTGTCAAAATTTCTACGGAAACTTTATTACAACCAAATGTAATC-TTTTATAAATGTTAAGAGCTTTTCAGAGG-AAAGAA-TATGACTCTTCTTTGAGCTAACCATTCTTCTAGATTTGCCTCTGAGCTGTTTCTAGATC-----------------------CATTTGCAAGGTGGTATCAGTAACTTCTTATTAGCTGGTTAGCAAAAG-AGCTATATAGTGCATCATTGTAATACGAAGGCAT-----CACAT---AGATGTAATGAGATTGGTATGCTAGGATCCTTTTCTTTGACTTTATTGAAGGTAAAGACATTATCATTTCCATCAATTTCCCCCTC-TTTGACAACCCAAACTCTGCTCCAGAAAATGTTTATGGCT-----------------------TGTTTATCACATTTAGGGATTCTATTTCTGAATAACTGCTAAA-ACTTTTTTG--AATTGATTATTAACTAATCACAATGGAGATGAATTCATCTC-ACGT-CAGTACCTCCATGCTGAG-GA-ATTGAGCTACTTGACATAGAGATAT----ATTAGACGTCAGGCATTCTCTTCCTACTGTTCTTTGGCTTCGTAAACAGAG--TCACAGTTGGCATCTTCAAAGAGACTATGGTGAAGTTGACTTCAGTGAGTGGATTCCTCCTCACGGGGTTTTCTGATGAGTGTTAAGCTTCAGATTTTACATGCATTGCTGTTTTTGGTGACACACCTGCTAGCTTTGACATTATGATAAT---CTCTTCATTATCACCATAATTACCTTGGAGCACCGTCTCCATTCCCCCATGTATTGCTTTTTAAAGCACCTCTCTCTTCCAGGACTCTGCTGCATCTCTGTCACAGTACCCCAGTCCATTGCAAATTCACTTATCGGCAACGGTTACATTTCTCTTGTTCAGCG---------------------CATAGCTCTGGCCTCATCAGAAGTGGCCATTCTCACAGTG---CTGTCTTATGACAGGTACACAGCGATCTGTCAACCACTTCTCTGTGAGGTCATTATGGATCCCAGTGCCTATAGGCATGCAGTGATAGCTGTGTGGATTGCGGGGGGCCTCTCTGGGCTCACACATGCTGCCATTAACTTCTCCAAACCTCTCTGTGGGAAGAGAGTCATCCACCAGTTCAACAACCTGTGATGTTCCTCAGCTGCGGAAACTAGCCTGCTCTTAAGGAATTCATTAATGAGCTTGCACTGGCTGGGTTCACAAGCTTTACAGCATTCATCTGTTTGATCTCCATTGTGCTCTCCAACCTTCGCATCTCCTCTACAGTGCTGAGAATCCCATCAACTCAGGGCTGGACCAAGGGCTTCACCACCTGCCTACCACACCTGTTTGTAGTTAACCTTCTTTCTTTGAGCTGCAGGCTTTGAGTTTCTCAGACCCCCTTCAGATTCGTCTTCAGCTATGGACCTCGTGTTCTCTGTATTTTACACTGTGATCCCTCCAACACTCAATCCAGTCTTCTATAGCTTATGGAATGACGCCATGAAGGCAGCACTGAGGAAGGTGCTGTCAAAGGAAGAGCTTGCTCAGAGAAAGATGTGTT
i cebCap1.NW_016107522v1          C 0 I 319
s otoGar3.GL873742                  1965598 1554 -   2232465 TCCAAAGCTCAAGATTCAATGCCTGATAACAGAGCCATCTACACTCATGCCGTCTACACACTACAATTTTGAGACATATTTCACTCTTCAAGA-----ATGGGAAGTTCATTCCAACCAAATGTAATC-TTCCTTAAATGTTAGGACCATTCAAAGGC-AAGAAG-TATGACTGTTCTTTGAGCTAACATCTATTCTAGATTTACCTGGGGGCTATTCTTAGATCCA---------------------------------------------TTCATTTTAGATGGTTAACGAAAGAAGT--TATGGTACATCGTTGTAATACTAAGGTATTAGACTATATATAATATATAGTACTTCTGGTA---------------CATTG-------TGGAGGTAAAGATTTTGTCATTTCCATCAATTTCTCCCTC-TTTGATAACCCAAAATCTGCTCAAGAAAA-ATTTATGATT-----------------------TGTTGATTACATTTGGTGATTCTATTTATGAATAATACTAAAA-ATTTTTCCG--AATTGAAT--------TTCACAATGGAGACAAATTCAACTT-GTTTCCAGAAACTCCATGCTAAG-GACACTAAGTTACCTTACATACAGATATATTAATTAAGTATCATGCTGTTTTCGCTTTCTGTTCTTTGGTTTCCCAAACAGAAATTCACACTTGGTATCTTCAGAATGACTACGGCCAACTTGACCTCAGTGAGTGGATTTCTTCTCATGGGGTTTTCTGATGAGCG-TAAACTTCAGATTTTACATGCACTTCTGTTTTTGGTAACATACATGCTTGCCTTGACA----GGCAAC---CTCCTCATTATCACCATCATTACCTTGGACCTTCGTCTCCATTCCCCTATGTATTACTTCTTAAAGCACCTCTCTCTTCTGGACCTCTGCTTCATCTCCATTACAGTCCCCCAGTCCATTGCAAACTCACTTATGAACAATGGTTATATTTCCCTGACTCAGTGCATTCTTCAGGTTTTCTTCTTCATAGCTCTGGCCTCATCAGAAGTGGCCATACTTACTGTG---ATGTCTTATGACCGGTATGCAGCCATCTGTCGACCACTGCAATATGAGACCATCATGGATCCCAGTGCTTGTAGGCGTGCAGTGATAGCTGTGTGGATTGCTGGAGGCCTGTCTGGGCTCATGCACACAGCTGTTAACTTCTCTATACCTCTCTGTGGGGAGAGAGTCATTTACCAATTC----TTTTGTGATATTCCTCAGATGCTGAAACTAGCTTGTTCTA-AAGAATTCATGAATGAGATTGCAGTGGCTGCATTTACAACCTCAACAGCCTTTGCCTGTTTGATCTCCATTGTGTTCTCCTACATTCACATCTTCTCCACAGTGCTGAGAATTCCATCAGCTGAGGGCCGCACTAAGGTCTTCTCCACCTGCCTACCACACCTATTTGTAGTC-ACATTTTTCCTCTCAGCTGCAGGCTTTGAGTTTCTAAGACCTCCTTCTGATTCTCCATCAGCTATGGACCTCATGTTTTCCATATTTTATACAGTGATACCTCCAACACTCAATCCAGTCATCTATAGCTTGCAGAATGATGCCATGAAGGCAGCACTGAGGAAAGTGCTGTCAAAAGAAGAATTTGCTCAGAGAAAGATGTATT
i otoGar3.GL873742                C 0 C 0
s canFam3.chr35                    26143004 1589 +  26524999 TCCAAACCTCGGGACTCA-------------GTGGCATCTGCATG---------------TTACAATTTTAAAGTTGATTTCACTGTTCAAGTTTGCCCTTGGAATTTCATTCCAACCAAATTTCATTATTTTAAAAATGTTGAGAGTCTTTCAGAGGCAAGGAA-TATGATTGTCCTTAGAATGAACATCTCCCTTAAG------TCTGGACTGTTCCTAGATC-----------------------CATTTACAAGATGGTACCAACAACTTCATTTTAGATGGTTAATGAAGGAAATTTTAC--TACCTCATTGTAATCCTAAGGTAT-----TGTATATAAGATGTAATAATACTAATATATCAGTGCAATCCTAAATGACTTTGTTGAGTGGAAAGACTTAATTGTCTCCATCAGTTTTTCACC--TTTGACAATCCAAACTCTGCTCCAGAAAATTCTGATGACTTTTTTTTTTTACCTATGTGAAGCTATTGATCACATTTAGGTGTTCTATTTCTGAATAATAGGTAAAGATTTTTCTA--AGTTAAATGTTACCTACTCACTATGGGGATAAATTTGTCTTGATTT-CCGTACCTCTAGGCTGAGTGC-ACCA--TTCCTTGACATACAGATAT----ACTAAATATGATACATTCT-TTACAACTGTTGTTTGGCTTCTTTGGCAGAG--TCATACTTTCTACCTTCAGTGTGACCATGGCCAACTTGACCTCCATGAGTGGATTCCTCCTCATGGGGTTTTCTGATCATCG-TGAGCTTCAGATTTTACATGCATTGCTTTTTTTGGTGACATACCTGTTGGCCTTGACA----GGCAAC---CTCCTCATTATCACTGTAACCAGCTTGGACCATCACCTACAGTCCCCCATGTATTACTTCTTGAAGCACCTCTCTCTTCTGGACCTCTGCTTCATCTCTGTCACAGTCCCCCAGTCCATCACAAATTCACTTATGAACAATGGTTACATTTCCTATGTCCAGTGCATTCTTCAGGTGTTCTTCTTCATAGCTCTGGCCTCATCAGAAGTGGCCATCCTCACAGTG---ATGTCTTATGACCGCTATGTCTCCATCTGTCGGCCCCTGCAGTATGAGACCATTATGAACCCCTGCATTTGTAGGTATGCAGTGACAGCTGTGTGGCTGGCTGGGGGCCTCTCTGGGCTCAtgcatacggctgtgaacttctccatacctctctgtggggagagagtcattcaccaattc----ttctgtgatgttcctcagatgctgaaactagcttgttctc-aTGAATTCATCAATGAGATTGCAGTGGCTGCCTTCACAACCTCAGCAGCATTCATCTGCTTGGTCTCCATCGTGCTCTCCTATGTTCATATCTTTTCTACCGTGCTGAGGATCCCATCAGCCGAGGGCCGGACCAAAGTCTTTGCCACCTGCCTACCACACCTGTTTGTAGTC-ACCTTCTTCCTCTCCACTGCAGGCTTTGAGTTTCTGCAGCCCCCTTCTGACTCCCAATCAGCTATGGACATCATGTTATCCATATTCTATACGGTGATACCACCAACACTCAATCCAGTTATATACAGTTTACGGAATGAAGCCATTAAGGCTGCTCTGAAGAAGGTGCTGTCAAAAGGAGAATTTGCTCAGAGAAAAATGTATT
i canFam3.chr35                   I 29 C 0

a score=1044866.000000
s hg38.chr6_GL000254v2_alt           573455 118 +   4827813 taaaagccatgtttaaactctgaagaaccatacaaatgaaaggcattgttattatGTTTCAGATTGGAAGAGAGGTGAATCTTATTTCTACCCAGAATGCTCTTCCAAGCTGTCTATT
s panTro5.chr6                     29545812 118 + 175400573 taaaagccatgtttaaactctgaagaaccatacaaatgaaaggcatttttattatGTTTCAGATTGGAAGAGAGGTGAATCTTGCTTCTTCCCAGAACGCTCTTCCAAGCTGTCTATT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29784068 118 + 173848474 taaaagccatgtttaaactctgaagaaccatacaaatgaaaggcatttttattatGTTTCAGATTGGAAGAGAGGTGAATCTTGCTTCTTCCCAGAACGCTCTTCCAAGCTGTCTATT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5586851 118 +   6154872 taaaagccatgtttaaactctaaagaaccatacaaatgaaaggccttgttattatGTTTCAGATTGGAAGAGAGGTGAATCTTATTTCTTCCCAGAACGCTCTTCCAAGCTGTCTATT
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     18612 118 +     39990 taaaagccatgtttaaactctaaagaaccatacgaatgaaaggcattgttactatGTTTCAGATTGGAAGAGAGGTGAATCTTATTTCTTCCCAGAATGCTCTTCCAAGCTGTCTATT
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29813259 117 + 172585720 taaaagccatgtttaaactctaaagaaccatagaaatgaaaggcattgttattatGTTTCAGATTGGAAG-GGGGTGAATCTAATTGCTTCCCAGAACGCTCTTCCAAGCTGTCTATT
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29475561 117 - 170955103 taaaagccatgtttaaactctaaagaaccatagaaatgaaaggcattgttattatGTTTCAGATTGGAAG-GGGGTGAATCTAATTGCTTCCCAGAACGCTCTTCCAAGCTGTCTATT
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2462135 117 -   2996164 taaaagccatgtttaaactctaaagaaccatagaaatgaaaggcattgttattatGTTTCAGATTGGAAG-GGGGTGAATCTAATTGCTTCCCAGAACGCTCTTCCAAGCTGTCTATT
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             226601 117 +    766320 taaaagccatgtttaaactctaaagaaccatagaaatgaaaggcattgttattatGTTTCAGATTGGAAG-GGGGTGAATCTAATTTCTTCCCAGAACGCTCTTCCAAGCTGTCTATT
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28738802 117 -  71996105 TAAAAGCCATGTTTAAACTCTAAAGAACCATAGAAATGAAAGGCATTGTTATtatgtttcagattggaag-ggggtgaatctaatttcttcccagaacgctcttccaagctgtctatt
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             211102 117 -    352859 taaaaggcatgtttaaactctaaagaaccatagaaatgaaaggcattgttattatGTTTCAGATTGGAAG-GGGGTGAATCTAATTTCTTCCCAGAACGCTCTTCCAAGCTGTCTATT
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2368268 117 -   3067355 taaaagccatgtttaaactctaaagaaccatagaaatgaaaggcattgttattatGTTTCAGATTGGAAG-GGGGTGAATCTAATTTCTTCCCGGAACGCTCTTCCAAGCTGTCTATT
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126586943 118 - 158406734 taaaagccatgtttaaactcgaaagaaccatacaaataaaaggcattgttattatGTTTCACATTGGAAGAGGGGTGAATTTTATTTCTTCCCAGAATGCTCTTCCAAGCTGTCTATT
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             212046 118 +   3820305 taaaaGCCGTGTTTAAACTCGAAAGATCCATACAAATAAAAGTCATTGTTATTATGTTTCACATTGGAAGAGGGGTGAATTTTATTTCTTCCCAGAATGCTCTTCCAAGCTGTCTATT
i cebCap1.NW_016107522v1          I 319 C 0
s otoGar3.GL873742                  1967152 110 -   2232465 TCAAAGCTGTGTTTAAACTCTAAGGAGCTATACAAATAAAAA-------TATTATGCTT-AAATTGGAAAAGGAATGAATCTGATCTCTTCCCAGAACTCTATTCCAACTTGTATATT
i otoGar3.GL873742                C 0 C 0
s canFam3.chr35                    26144593 116 +  26524999 TAAAAACCATTTTTAAATTCTAAAAATCCATACAAATAAAAGGTACTCCCAATATATTTCACATTGTAAG-AGGGGAGGTCTGATTTCCT-TCAGAACTCCATTCCAACTTTTCTTTT
i canFam3.chr35                   C 0 I 15139

a score=4001837.000000
s hg38.chr6_GL000254v2_alt           573573 505 +   4827813 GTATATATTCCTCTCAAATATAATTCTTTAAAATTTAAGATGTTGTGC-TCTAATAATATTAGCTTTCCTTCCTCCCTCCAATTCAAGTGTTATTTTAAGTCATCTTTG------------------------------GAAAATTTTTCTGAAATGAAGGAGAAAGACAATTAGTTTGGAGTCTGGCCTGTATAATTTAAAACTTGTTATTAACAAATAAGGTTGGAGAT-------AGATGAAGCTAACTGGGTTAATATT-----------ATGGTGCATATATGGTATTTCCAGTGGGCCTCCTAGTTT-TCTATCCATATTAAGTATTCATATTAAGTTCTTTTACTATTATTACAGTGGTGATTTcaacaatttattcagcccctagtaagtatcaagtgctttatatata--taca-tttttttgactcaagaaaacaac----------------------tcttctagctataacatattgtccccattttgccaataggaacaataaatttaggaaggattagttaa-ttttcctgagatttctcaaataaatggtagttaagctctgatt
s panTro5.chr6                     29545930 505 + 175400573 GTATATATTCCTCTCAAATATAATTCTTTAAAATTTAAGATGTTGTGC-TCTAATAATATTAGCTTTCCTTCCTCCCTCCAATTCAAGTGTTATTTTAAGTCATCTTTG------------------------------GAAAATTTTTCTGAAATGAAGGAGAAAGACAATTAGTTTGGAGTCTGGCCTGTATAATTTAAAACTTGTTATTAACAAATAAGGTTGGAGAT-------AGATGAAGCTAACTGGGTTAATATG-----------ATGGTGCATATATGGTATTTCCAGTGGGCCTCCTAGTTT-TCTATCCATATTAAGTATTCATATTAAGTTCTTTTACTATTATTACAGTGGTGATTTcaacaatttattcagcccctagtaagtatcaagtgctttatatata--taca-tttttttgactcaagaaaacaac----------------------tcttctagctataacatattgtccccattttgccaataggaacaataaatttaggaaggattaattaa-ttttcctgagatttctcaaataaatggtagttaagctgtgatt
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29784186 505 + 173848474 GTATATATTCCTCTCAAATATAATTCTTTAAAATTTAAGATGTTGTGC-TCTAATAATATTAGCTTTCCTTCCTCCCTCCAATTCAAGTGTTATTTTAAGTCATCTTTG------------------------------GAAAATTTTTCTGAAATGAAGGAGAAAGACAATTAGTTTGGAGTCTGGCCTGTATAATTTAAAACTTGTTATTAACAAATAAGGTTGGAGAT-------AGATGAAGCTAACTGGGTTAATATG-----------ATGGTGCATATATGGTATTTCCAGTGGGCCTCCTAGTTT-TCTATCCATATTAAGTATTCATATTAAGTTCTTTTACTATTATTACAGTGGTGATTTcaacaatttattcagcccctagtaagtatcaagtgctttatatata--taca-tttttttgactcaagaaaacaac----------------------tcttctagctataacatattgtccccattttgccaataggaacaataaatttaggaaggattaattaa-ttttcctgagatttctcaaataaatggtagttaagctgtgatt
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5586969 500 +   6154872 GTATATATTCCTCTCAAATATAATTCTTTAAAATTTAAGATGTTGTGC-TCTAATAATATTAGCTTTCCTTCCTCCCTCCAATTCAAGTGTTATTTTAAGTCATCTTT-------------------------------GAAAATTTTTCTGAAATGAAGGAGAAAGAC----AGTTTGGAGTCTGGCCTGTATAATTTAAAACTTGTTATTAAC-AATAAGGTTGGAGAT-------AGATGAAGCTAACCGGGTTAATATG-----------ATGGTGCATATATGGTATTTCCAGTGGGCCTCCTAGTTT-TCTATCCATATTAAGTATTCATATTAAGTTCTTTTACTATTATTACAGTGGTGATTTcaacaatttattcagcccctagtaagtatcaagtgctttatatata--tacattttttttggctcaagaaaacaac----------------------tctcctagctatgccatattgtccctattttgccaataggaacaataaatttaggaaggattaattaa-ttttcctgagatttctcaaataaatggtagttaagctgtgatt
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     18730 507 +     39990 GCATATATTCCTCTCAAATATAATTCTTTAAAATTTAAGATGTTGTGCTTCTAATAATATTAGCTTTCCTTCCTCCCTCCAATTCAAGTGTTATTTTAAGTCATCTTTG------------------------------GGAAATTTTTCTGAAATGAAGGAGAAAGACAATTAGTTTGGAGTCTGGCCTGTATAATTTAAAGCTTGTTATTAACAAATAAGGTTGGAGAT-------AGATGAAGCTAACTGGGTTAATATG-----------ATGGTGCATATATGGTATTTCCAGTGAGCCTCCTAGTTT-TCTATCCATATTAAGTATTCATATTAAGTTCTTTTACTATTATTACAATGGTGATTTcaacaatttattcagcccctagtaagtatcaagtgctttatatata--tatattttttttgactcaagaaaacaac----------------------tcttctagctatgccatattgtccccattttgccaataggaacaataaattcaggaaggattaattaa-ttttcccgagatttctcaaataaatagcagttaagctgtgatt
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29813376 506 + 172585720 GCATATATTCCTCTCAAATATAATTCTTCAAAATTTAAGATGTTGTGCTTCTAATAATATTGGCTTTCCTTCCTCCCTCCAATTCAAGTGCTATTTTAAGTCATCTTTG------------------------------GGAAATTTTTCTGAAATGAAGGAGAAAGACAATTAGTTTGGAGTCTGGCCTGTATAATTTAAAATCCATTATTAACAAAT-AGGTTGGAGAT-------AGTTGAAGCTAACTGGGATAATATG-----------ATAGTGCATATATGGTCTTTCCAGTGGGCCTCCTAGTTT-CCTATCCATATTAAGTATTCTTATTAAGTTCTTTTGCTATTATTACAGTGGTGATTTcaacaatttattcagcccctagcaagtatcaagtg-tttatacata--tttttttcttttgactcaagaaaacaac----------------------tcttctagctatgccatattgtccccattttgccaataggagcaataaatttaggaaggattaattaattttttctgagatttgtcaaacaaatagtagttaagctgtgatt
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29475678 506 - 170955103 GCATATATTCCTCTCAAATATAATTCTTCAAAATTTAAGATGTTGTGCTTCTAATAATATTGGCTTTCCTTCCTCCCTCCAATTCAAGTGCTATTTTAAGTCATCTTTG------------------------------GGAAATTTTTCTGAAATGAAGGAGAAAGACAATTAGTTTGGAGTCTGGCCTGTATAATTTAAAATCCATTATTAACAAAT-AGGTTGGAGAT-------AGTTGAAGCTAACTGGGATAATATG-----------ATAGTGCATATATGGTCTTTCCAGTGGGCCTCCTAGTTT-CCTATCCATATTAAGTATTCTTATTAAGTTCTTTTGCTATTATTACAGTGGTGATTTCAACAATTTATTCAGCCCCTAGCAAgtatcaagtg-tttatacata--tttttttcttttgactcaagaaaacaac----------------------tcttctagctatgccatattgtccccattttgccaataggagcaataaatttaggaagggttaattaattttttctgagatttctcaaacaaatagtagttaagctgtgatt
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2462252 506 -   2996164 GCATATATTCCTCTCAAATATAATTCTTCAAAATTTAAGATGTTGTGCTTCTAATAATATTGGCTTTCCTTCCTCCCTCCAATTCAAGTGCTATTTTAAGTCATCTTTG------------------------------GGAAATTTTTCTGAAATGAAGGAGAAAGACAATTAGTTTGGAGTCTGGCCTGTATAATTTAAAATCCATTATTAACAAAT-AGGTTGGAGAT-------AGTTGAAGCTAACTGGGGTAATATG-----------ATAGTGCATATATGGTCTTTCCAGCGGGCCTCCTAGTTT-CCTATCCATATTAAGTATTCTTATTAAGTTCTTTTGCTATTATTACAGTGGTGATTTcaacaatttattcagcccctagcaagtatcaagtg-tttatacata--tttttttcttttgactcaagaaaacaac----------------------tcttctagctatgccatattgtccccattttgccaataggagcaataaatttaggaaggattaattaattttttctgagatttctcaaacaaatagtagttaagctgtgatt
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             226718 506 +    766320 GCATATATTCCTCTCAAATATAATTCTTCAAAATTTAAGATGTTGTGCTTCTAATAATATTGGCTTTCCTTCCTCCCTCCAATTCAAGTGCTATTTTAAGTCATCTTTG------------------------------GGAAATTTTTCTGAAATGAAGGAGAAAGACAATTAGTTTGGAGTCTGGCCTGTATAATTTAAAATTCATTATTAACAAAT-AGGTTGGAGAT-------AGTTGAAGCTAACTGGGGTAATATG-----------ATAGTGCATATATGGTCTTTCCAGCGGGCCTCCTAGTTT-CCTATCCATATTAAGTATTCTTATTAAGTTCTTTTGCTATTATTACAGTGGTGATTTCAACAATTTATTCAACCCCTAGCAAgtatcaagtg-tttatacata--tttttttcttttgactcaagaaaacaac----------------------tcttctagctatgccatattgtccccattttgccaataggagcaataaatttaggaaggattaattaattttttctgagatttctcaaacaaatagtagttaagctgtgagt
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28738919 506 -  71996105 gcatATATTCCTCTCAAATATAATTCTTCAAAATTTAAGATGTCGTGCTTCTAATAATATTGGCTTTCCTTCCTCCCTCCAATTCAAGTGCTATTTTAAGTCATCTTTG------------------------------GGAAATTTTTCTGAAATGAAGGAGAAAGACAGTTAGTTTGGAGTCTGGCCTGTATAATTTAAAATCCATTATTAACAAAT-AGGTTGGAGAT-------AGTTGAAGCTAACTGGGATAATATG-----------ATAGTGCATATATGGTCTTTCCAGCGGGCCTCCTAGTTT-CCTATCCATATTAAGTATTCTTATTAAGTTCTTTTGCTATTATTACAGTGGTGATTTCAACAATTTATTCAGCCCCTAGCAAGTATCAAGTG-TTTATACATA--TTTTTTTCTTTTGACTCAAGAAAACAAC----------------------TCTTCTAGCTATGCCATAttgtacccattttgccaataggagcaataaatttaggaaggattaattaattttttctgagatttctcaaacaaatagtagttaagctgtgatt
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             211219 506 -    352859 GCATATATTCCTCTCAAATATAATTCTTCAAAATTTAAGATGTTGTGCTTCTAATAATATTGGCTTTCCTTCCTCCCTCCAATTCAAGTGCTATTTTAAGTCATCTTTG------------------------------GGAAATTTTTCTGAAATGAAGGAGAAAGACAATTAGTTTGGAGTCTGGCCTGTATAATTTAAAATTCATTATTAACAAAT-AGGTTGGAGAT-------AGTTGAAGCTAACTGGGGTAATATG-----------ATAGTGCATATATGGTCTTTCCAGCGGGCCTTCTAGTTT-CCTATCCATATTAAGTATTCTTATTAAGTTCTTTTGCTATTATTACAGTGGTGATTTcaacaatttattcaacccctagcaagtatcaagtg-tttatacata--tttttttcttttgactcaagaaaacaac----------------------tcttctagctatgccatattgtccccattttgccaataggagcaataaatttaggaaggattaattaattttttctgagatttctcaaacaaatagtagttaagctgtgatt
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2368385 527 -   3067355 GCATATATTCCTCTCAAATATAATTCTTCAAAATTAAAGATGTTGTGCTTCTAATAATATTGGCTTTCCTTCCTCCCTCCAATTTAAGTGCTATTTTAAGTCATCTTTG------------------------------GGAAATTTTTCTGAAATGAAGGAGAAAGAGAATTAGTTTGGAGTCTGGCCTGTATAATTTTAAATACATTATTAACAAAT-AGGTTGGAGAT-------AGTTGAAGCTAACTGGGATAATATG-----------ATAGTGCATATATGGTCTTTCCAGCGGGCCTCCTAGTTT-CCTATCCATATTAAGTATTCTTATTAAGTTCTTTTGCTATTATTACAGTGGTTATTTCAACAATTTATTCAGCCCCTAGCAAGTATCAGGTG-TTTATACGTA--ATTTTTTCTTTTGACTCAAGAAAACAACAATTTTTTCTTTTGACTCAAGTACTTCTAGCTATGCCAtattgtccccattttgccaataggagcaataaatttaggaaggattaattaa-ttttcctgagatttctcaaacaaatagtagttaagctgtgatt
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126587061 494 - 158406734 ATATATATGCCTCTCAAATACAATTCTTTAAAATTGAAGATATTTTGCTTTTAAGAATATTGATTTTTCTTCCTCCCTTCAATGCAAGTGTTATTTTAAGTCATCTCTG------------------------------GGAAATTTTTCTGAAATGAAGGAGAAAGACAATTAGTTTGGAGTCTGGCCTGTTTAATTTAAAATTCCTTATTAACAAAT-A----GCAGAT--------GATGAAGCTAACTGGGCTAACATG-----------ATGGTGCATGTGTGGTGTTTCTGGTGGGCCTCCTAGTTC-CCTATCCGTATTAAGTATTCATATTAAGTTCTTTTGCTATTATTACAGTGCTGATTTCAACAATTTATTcagcccct----cgtatcaggtgctttatacaca-ttttttttcttttgactcaagaaaacaac----------------------tcttctagctacgccatattgtctccattttgccaatgggaacaataaatttaggaaagattaa-----ttttcctgagatttctcaaataaatagtagttaagctgtgatt
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             212164 529 +   3820305 GTATATGTTCCTCTCAAATATAATTCTTTAAAATTGAAGATATTGTGCTTCTAAGAATATTGGTTTTCCTTCCTCCCTTCAATGCAAGTGTTATTTTAAGTCATCTCTGACTTTTTTTTTAAGTTATTTAAGTCATCTCGGAATTTTTTCTGAAATGAAGGAGAAAGACAATTAGTTTGGAGTCTGGCCTGTATAATTTAAAATTCGTTATTAACAAAT-AGGTTGCAGAT--------GATGAAGCTAACTGGGCTAATATG-----------ATGGCGCATGTATGGTGTTTCTGGTGGGCCTCCTAGTTT-TCTGTGCATATTAAGTATTCATATTAAGTTATTTTGCTATTATTACAGTGGTGATTTCAATAACTTATTcagcccct----cgtatcaggtgctttatacacatttttttttcttttgactcaaggaaacaac----------------------tcttccagctatgccatattgtcccaatttggccaatgggaacaataaatttaggaaagattaa-----ttttcctgagagttctcaaataaatagcagtaaagctgtgatt
i cebCap1.NW_016107522v1          C 0 C 0
s otoGar3.GL873742                  1967262 478 -   2232465 CTATATACTGTTCTCAAATATCATTCTTTAAAATTTAAGAAATTATAC---TAAAATTATTGGCTTTCTTTTCCTCCTCC-----AAGTGTTATTTTAAGACATCTTTT------------------------------AGGAATTTCTTTGAAATGAAAGAGAATGGCAATTAGTTTGAGGTCTGGCTTATATTATTTAAAATTAG---TTAACGAAT-AGATTATAGACTACAATCAGATGA----AACTGTGTTAATATGATAGTATATCTATAGTGCATGTATGGGATTTCCAGAGAACCTCTTAGTTTCCCTATCCATATTAAG-------------------------TATTATAATAGTTATTATAATAATGTATTCAATCCCT----AATTTCaaatgctttatgcaca--tt---tttctttaactcatggaaacaac----------------------tcctctggttatgccatattgtcttcattttgctaacggggacactaaatttaagaatgattaattaa-tttttcttagctctctccaatgaatagtgggaaaactgtgatt
i otoGar3.GL873742                C 0 I 375
e canFam3.chr35                    26144709 15139 +  26524999 I

a score=3121306.000000
s hg38.chr6_GL000254v2_alt           574078 385 +   4827813 caaattaatatttgtctgactcaaaCAATAAGGTCATTTATGTTC-CTTACTGATGGCAAATGCATTATTACCCAAAtgtgagtgtgtatgttta--tgtgtgtgtgtgatgtgtATAATCTATAAATATAAGCATATACTACTATAATCTATTAATAAAATTGTCATCACCCTTGTGCA--TCCCTATTACTGGAGGTATTTATATTAATTCCTTTACTTTTCTGATCTGTACAAGAGTTTGACAAATTGGTTTTACAGAGTTAGGCAGGGGATGCTCCCTAGTTCCATGAAACAGAATATAGATAAACTGCAAATGAAGAGTTCCAACTTATGAATGTGTGAGATAAGGAGGCACAAATCTTGTGAATCTGAATATCTGATTCAATTT
s panTro5.chr6                     29546435 385 + 175400573 caaattaatatttgtctgactcaaaCAATAAGGTCATTTATGTTC-CTTACTGATGGCAAATGCATTATTACCCAAAtgtgagtgtgtatgttta--tgtgtgtgtgtgatgtgtATAATCTATAAATATAAGCATATACTACTATAATCTATTAATAAAATTGTCATCACCCTTGTGCA--TCCCTATTACTGGAGGTATTTATATTAATTCCTTTACTTTTCTGATCTGTACAAGAGTTTGACAAACTGGTTTTACAGAGTTAGGCAGGGGATGCTCCCTAGTTCCATGAAACAGAATATAGATAAACTGCAAATGAAGAGATCCAACTTATGAATGTGTGAGATAAGGAGGCATAAATCTTGTGAATCTGAATATCTGATTCAATTT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29784691 385 + 173848474 caaattaatatttgtctgactcaaaCAATAAGGTCATTTATGTTC-CTTACTGATGGCAAATGCATTATTACCCAAAtgtgagtgtgtatgttta--tgtgtgtgtgtgatgtgtATAATCTATAAATATAAGCATATACTACTATAATCTATTAATAAAATTGTCATCACCCTTGTGCA--TCCCTATTACTGGAGGTATTTATATTAATTCCTTTATTTTTCTGATCTGTACAAGAGTTTGACAAACTGGTTTTACAGAGTTAGGCAGGGGATGCTCCCTAGTTCCATGAAACAGAATATAGATAAACTGCAAATGAAGAGATCCAACTTATGAATGTGTGAGATAAGGAGGCATAAATCTTGTGAATCTGAATATCTGATTCAATTT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5587469 385 +   6154872 caaattaatatttgtctgactcaaaCAATAAGGTCATTTATGTTC-CTTACTGATGGCAAATGCATTATTACCCAAAtgtgagtgtgtatgttca--tgtgtgtgtgtgatgtgtATAATCTATAAATATAAGAATATACTACTATAATCTATTAATAAAATTGTCATCACCCTTGTGCA--TCCCTATTACTGGAGGTATTTATATTAATTCCTTTACTTTTCTGATCTGTACAAGAGTTTGACAAATTGGTTTTACAGAGTTAGGCAGGGGATGCTCCCTAGTTCCATGAAACAGAATATAGATAAACTGCAAATGAAGAGATCCAACTTATGAATGTGTGAGATAAGGAGGCACAAATCTTGTGAATCTGAATATCTGATTCAATTT
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     19237 387 +     39990 caaattaatatttgtctgactcaaaCAATAAGGTCATTTATGTTC-GTTACTGATGGCAAATGCATTATTACCCAAAtgtgagtgtgtatgtttatgtgtgtgtgtgtgatgtgtATAATCTATAAATATAAGCATATACTACTATAATCTATTAATAAAATTGTCATCACCCTTGTGCA--TCCCTATTACTGGATGTATTTATATTAATTCCTTTACTTTTCTGATCTGTACAAGAGTTTGACAAATTGGTTTTACAGAGTTAGGCAGGGGATGCTCCCTAGTTCCATGAAACAGAATATAGATAAACTGCAAATGAAGAGATCCAACTTATGAATATGTGAGATAAGGAGGCATAAATCTTGTGAATCTGTATATCTGATTCAATTT
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29813882 385 + 172585720 caaattaatatttgtctgactcaaaCAATAATGTCATTTATGTTC-CTTACTCATGGCAAATGCATTATTACCCAAAtgtgagtgtgtatgttta--tgtgtgtgtgtgaggtgtACAATCTATAAATATAAGCATATACAACTATAATCTATTAATAAAATTGTCATCACCCTTGTGTA--TCCCTATTACTGGAGATATTTATATTAATTCCTTTACTTTTCTGATCTGTACAAGAGTTTGACAAATTGGTTTTACAGAGTTAGCCTGGGGATGCTCCCTAGTTCCATGAAACAGAATATAGATAAACTGCAAACGAAAAGATCCAACTTACGAATGTGTGAGATAAGGGGGCATAAATCTTGTGAATCTGAATATCTGATTCAATTT
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29476184 385 - 170955103 caaattaatatttgtctgactcaaaCAATAATGTCATTTATGTTC-CTTACTCATGGCAAATGCATTATTACCCAAAtgtgagtgtgtatgttta--tgtgtgtgtgtgaggtgtacaatctataaatataagcatatacaactataatctattaaTAAAATTGTCATCACCCTTGTGTA--TCCCTATTACTGGAGATATTTATATTAATTCCTTTACTTTTCTGATCTGTACAAGAGTTTGACAAATTGGTTTTACAGAGTTAGCCTGGGGATGCTCCCTAGTTCCATGAAACAGAATATAGATAAACTGCAAATGAAAAGATCCAACTTATGAATGTGTGAGATAAGGGGGCATAAATCTTGTGAATCTGAATATCTGATTCAATTT
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2462758 385 -   2996164 caaattaatatttgtctgactcaaaCAATAATGTCATTTATGTTC-CTTACTCATGGCAAATGCATTATTACCCAAAtgtgagtgtgtatgttta--tgtgtgtgtgtgaggtgtacaatctataaatataagcatatacaactataatctattaaTAAAATTGTCATCACCCTTGTGTA--TCCCTATTACTGGAGATATTTATATTAATTCCTTTACTTTTCTGATCTGTACAAGAGTTTGACAAATTGGTTTTACAGAGTTAGCCTGGGGATGCTCCCTAGTTCCATGAAACAGAATATAGATAAACTGCAAATGAAAAGATCCAACTTATGAATGTGTGAGATAAGGGGGCATAAATCTTGTGAATCTGAATATCTGATTCAATTT
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             227224 387 +    766320 caaattaatatttgtccgactcaaaCAATAAGGTCATTTATGTTC-CTTACTCATGGCAAATGCATTATTACCCAAAtgtgagtgtgtatgttta--tgtgtgtgtgtgaggtgtACAATCTATAAATGTAAGCATATACAACTATAATCTATTAATAAAATTGTCATCACCCTTTTACATCTCCCTATTACTGGAGATATTTATATTAATTCCTTTACTTTTCTGATCTGTACAAGAGTTTGACAAATTGGTTTTACAGAGTTAGCCTGGGGATGCTCCCTAGTTCCATGAAACAGAATATAGATAAACTGCAAATGAAAAGATCCAACTTATGAATGTGTGAGATAAGGAGGCATAAATCTTGTGAATCTGTATATCTGATTCAATTT
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28739425 385 -  71996105 caaattaatatttgtctgactcaaacaataaggtcatttatgttc-cttactcatggcaaatgcattattacccaaatgtgagtgtgtatgtTTA--TGTGTGTGTGTGAGGTGTACAATCTATAAATATAAGCATATACAACTAtaatctattaataaaattgtcatcacccttgtgta--tccctattactggagatatttatattaattcctttacttttcTGATCTGTACAAGAGTTTGACAAATTGGTTTTACAGAGTTAGCCTGGGGATGCTCCCTAGTTCCATGAAACAGAATATAGACAAACTGCAAATGAAAAGATCCAACTTATGAATGTGTGAGATAAGGAGGCATAAATCTTGTGAATCTGAATATCTGATTCAATTT
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             211725 387 -    352859 caaattaatatttgtctgactcaaaCAATAAGGTCATTTATGTTC-CTTACTCATGGCAAATGCATTATTACCCAAAtgtgagtgcgtatgttta--tgtgtgtgtgtgaggtgtacaatctataaatgtaagcatatacaactataatctattaaTAAAATTGTCATCACCCTTTTACATCTCCCTATTACTGGAGATATTTATATTAATTCCTTTACTTTTCTGATCTGTACAAGAGTTTGACAAATTGGTTTTACAGAGTTAGCCTGGGGATGCTCCCTAGTTCCATGAAACAGAATATAGATAAACTGCAAATGAAAAGATCCAACTTATGAATGTGTGAGATAAGGAGGCATAAATCTTGTGAATCTGAATATCTGATTCAATTT
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2368912 385 -   3067355 caaattaatatttgtctgactcaaaCAATAAGGTTATTTATGTTC-CTTACTCATGGCAAATGCATTATTACCCAAAtgtgggtgtgtatgttta--tgtgtgtgtgtgaggtgtacaatctataaatataagcatatacaactataatctattaaTAAAATTGTCATCACCCTTGTGTA--TCCCTATTACTGGAGATATTTATATTAATTCATTTACTTTTCTGATCTGTACAAGAGTTTGACAAGTTGGTTTTACAGAGTTAGCCTGGGGATGCTCCCTAGTTCCATGAAACAGAATATAGATAAACTGCAAATGAAAAGATCCAACTTATGAATGTGTGAGATAAGGAGGCATAAATCTTGTGAATCTGAATATCTGATTCAATTT
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126587555 374 - 158406734 taaattaatatttgtctgactca------aaggtcatttatgttc-cttACTCATGGCAAATGCTTTATTACCCAAATAACAgtgtgtgtgtgtg--tgtgtgtgtgt---gtATAAAATCTATAAATATAAGCATATACTC--ATAATCTATTAATACAATTGTCATCACCCTTGTGTA--TCCCCATTACTGGTGATATTTATATGAATTCCTTCATTTTTCTGATTTGTACAAGAGTTTTACAAGTTGATTTTACAAAGTTAGTCAGGAGATTCCCCCTAGTTCCTTAAAACAGAATATAGATAAATTACAAATGAAGAGATCAAACCTATGAATGTGTGAGATAAGGAGTCATATATTTTGTGACTCTGAATATCTGATTCATCTT
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             212693 369 +   3820305 taaattaatatttgtctgactca------aaggtcATTTATGTTC-GTTACTTATGGCAAACGCTTTATTACCCAAATGACAGTATGTATGTTTA--TGTGCGTGCGT---GTG-------TATAAATATAAGCACATACTCTTATAATCTGTTAATACAATTGTCATCACCCTTATGTA--TCCCCATTACTGGTGATATTTATATGAATTCCTTCATTTTTCTGATCTGTACAAGAGTTTGACAAGTTGATTTTACAAAGTTAGTCAGGAGATTCCCCCTAGTTCCTTAAAACAGAATATAGATAAATTGCAAATGAAGAGATGAAACCTATGAATGTGTGAGATAAGGAGTCATAAATTTTGTGACTCTGAATATCTGATTCATTTT
i cebCap1.NW_016107522v1          C 0 C 0
s otoGar3.GL873742                  1968115 349 -   2232465 CAAATTAGTATTTGCCTAACTCA------AAAGTCATTTATTTACTTTTACTCATTGCAAATGCTTTGTTA-----------------ATCTCTC--TCTCTCT--------CATCACACCTATAGACATAAGCATGTGCTACTATAATCTATTAGCGAAATAGTCATCAGTTGTGTGCT--TATCCATTATTGGAGATGTTTAT----ATTCATTTATTCTTTTGATCTGTACAAGAGTTCAATAAAAATTTTTTACAGCATTAAGCAGAGGATGC-CTCTAGTTCCATAGAACAGAATAAAGATGAGTTGCACATGAAGAGATAAGACCTATGAATGTATAAACTATTGAGTCACA-ATTTTGTGAATCTGAATGTCTAATTTACTTT
i otoGar3.GL873742                I 375 I 4
e canFam3.chr35                    26144709 15139 +  26524999 I

a score=33059.000000
s hg38.chr6_GL000254v2_alt           574463 4 +   4827813 TGTG
s panTro5.chr6                     29546820 4 + 175400573 TGTG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29785076 4 + 173848474 TGTG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5587854 4 +   6154872 TGTG
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     19624 4 +     39990 TGTG
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29814267 4 + 172585720 TGTG
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29476569 4 - 170955103 TGTG
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2463143 4 -   2996164 TGTG
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             227611 4 +    766320 TGTG
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28739810 4 -  71996105 TGTG
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             212112 4 -    352859 TGTG
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2369297 4 -   3067355 TGTG
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126587929 4 - 158406734 TGTG
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             213062 4 +   3820305 TATG
i cebCap1.NW_016107522v1          C 0 C 0
e canFam3.chr35                    26144709 15139 +  26524999 I
e otoGar3.GL873742                  1968464 4 -   2232465 I

a score=1659596.000000
s hg38.chr6_GL000254v2_alt           574467 193 +   4827813 TAATGCTGCAGATTTCTTCAAGAAAGACTCATAATTTACAAGAGTACAAAACTGGACTAGTCCCCTCAGTTTTGAAGTAAATCAAAGTGCATGTTTTAATGACAAAGGGAATAAGCAATTGCTCAGTAA--TGGGGAATGTTTTTATAGGACTTTTTTGAATTAATGGTTATAATATC---TACATATGCATATACCT----
s panTro5.chr6                     29546824 193 + 175400573 TAATGCTGCAGATTTCTTCAAGAAAGACTCATAATTTACAAGAGTACAAAACTGGACTAGTCCCCTCAGTTTTGAAGTAAATCAAAGTGCATGTTTTAATGACAAAGGGAATGAGCAATTGCTCAGTAA--TGGGAAATGTTTTTATAGGACTTTTTTGAATTAATGGTTATAATATC---TACATATGCATATACCT----
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29785080 193 + 173848474 TAATGCTGCAGATTTCTTCAAGAAAGACTCATAATTTACAAGAGTACAAAACTGGACTAGTCCCCTCAGTTTTGAAGTAAATCAAAGTGCATGTTTTAATGACAAAGGGAATGAGCAATTGCTCAGTAA--TGGGAAATGTTTTTATAGGACTTTTTTGAATTAATGGTTATAATATC---TACATATGCATATACCT----
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5587858 193 +   6154872 TAATGCTGCAGATTTCTTCAAGAAAGACTCATAATTTACAAGAGCACAAAACTGGACTAGTCCCCTCAGTTTTGAAGTAAATCAAAGTACATGTTTTAATGACAAAGGGAATGAGCAATTGCTCAGTAA--TGGGGAATGTTTTTATAGGACTTTTTTGAATTAATGGTTATAATATC---TACATATGCATATATCT----
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     19628 193 +     39990 TAATGCTGCATATTTCTTCAAGAAAGACTCATAATTTACAAGAGTACAAAACTGGACTAGTCCCCTCAGTTTTGAAGTAAATCAAAGTACATGTTTTAATGACAAAGGGAAAGAGCAATTGCTCAATGA--TGGGGAATGTTTTTATAGGACTTTTTTGAATTAATGGTTATAATATC---TGCACATGCATATACCT----
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29814271 193 + 172585720 TAATTCTGCAGATTTCGTCAAGAAAGACTCATAATTTCCAAGAGTACAAAACTGGACTAGTCCCCTCAGTTTTGAAGTAAATCAAAGTACATGTTTTAATGACAAAGGGAATGAGCAATTGCTCAGTAA--TGGGGAATGTTTTTATAGGACTTTTTTGAATTAATGGTTATGATATC---TACACATGCATACACCT----
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29476573 193 - 170955103 TAATGCTGCAGATTTCGTCAAGAAAGACTCATAATTTCCAAGAGTACAAAACTGGACTAGTCCCCTCAGTTTTGAAGTAAATCAAAGTACATGTTTTAATGACAAAGGGAATGAGCAATTGCTCAGTAA--TGGGGAATGTTTTTATAGGACTTTTTTGAATTAATGGTTATGATATC---TACACATGCATACACCT----
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2463147 193 -   2996164 TAATGCTGCAGATTTCGTCAAGAAAGACTCATAATTTCCAAGAGTACAAAACTGGACTAGTCCCCTCAGTTTTGAAGTAAATCAAAGTACATGTTTTAATGACAAAGGGAATGAGCAATTGCTCAGTAA--TGGGGAATGTTTTTATAGGACTTTTTTGAATTAATGGTTATGATATC---TACACATGCATACACCT----
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             227615 193 +    766320 TAATGCTGCAGATTTCTTCAAGAAAGACTCATAATTTCCAAGAGTACAAAACTGGACTAGTCCCCTCAGTTTTGAAGTAAATCAAAGTACATGTTTTAATGACAAAGGGAATGAGCAATTGCTCAGTAA--TGGGGAATGTTTTTATAGGACTTTTTTGAATTAATGGTTATGATATC---TACACATGCATACACCC----
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28739814 193 -  71996105 TAATGCTGCAGATTTCTTTAAGAAAGACTCATAATTTCCAAGAGTACAAAACTGGACTAGTCCCCTCAGTTTTGAAGTAAATCAAAGTACATGTTTTAATGACAAAGGGAATGAGCAATTGCTCAGTAA--TGGGGAATGTTTTTATAGGATTTTTTTGAATTAATGGTTATGATAGC---TACACATGCATACACCT----
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             212116 193 -    352859 TAATGCTGCAGATTTCTTCAAGAAAGACTCATAATTTCCAAGACTACAAAACTGGACTAGTCCCCTCAGTTTTGAAGTAAATCAAAGTACATGTTTTAATGACAAAGGGAATGAGCAATTGCTCAGTAA--TGGGGAATGTTTTTATAGGACTTTTTTGAATTAATGGTTATGATATC---TACACATGCATACACCT----
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2369301 193 -   3067355 TAATGCTGCAGATTTCTTCAAGAAAGATTCATAATTTCCAAGAGTACAAGACTGGACTAGTCCCCTCAGTTTTGAAATAAATCAAAGTACATGTTTTAATGACAAAGGGAATGAGCAATTGCTCAGTAA--TGGGGAATGTTTTTATAGGATTTTTTTGAATTAATGGTTATGATATC---TACACATGCATACACCT----
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126587933 193 - 158406734 TAATGCTTCAAATTTCTTTAAGAAAGACTCATAATTTACAAGAGTACAAAACTGGACCAGTCCCTTCAGTTTTGAAGTAAATCAAAGTATATGTTTTAATGACCAAAGGAATGAGGAATTGCTCAGTAA--TGAGGAATGTCTTTATATGACTTTTTTGAATTAATGGTTATAATATC---TACACATGTATATACCT----
i calJac3.chr6                    C 0 C 0
s cebCap1.NW_016107522v1             213066 193 +   3820305 TAATGCCGCAAATTTCTTCAAGAAAGACTCATAATTTACAAGAGTACAAAACTGGACTAGTCCCTTCAGTTTTGAAGTAAATCAAAGTACATGTTTTAATGACCAAAGGAATGAGGAATTGCTCAGTAA--TGAGGAATGTTTTTATATGATTTTTTTGAATTAATGGTTATAATATC---TACATATGTATATACCT----
i cebCap1.NW_016107522v1          C 0 I 2999
s otoGar3.GL873742                  1968468 199 -   2232465 TTGTGCTACAAATTTCTCCAAG---GACCCCAAATTTACAAGAGTGGAAAACTGGACTACTCCCCTCAATTTCGAAGTAAATTAAAGTACATATTCTAACGACAGTAGAAATGAGCAATTGCTGAGTAATTTGGGTGGTGTTTCTATACAGCTTATTTAGATTAATAGTTGTAATATCTATTACACATGCAATCATATGTAT
i otoGar3.GL873742                I 4 C 0
e canFam3.chr35                    26144709 15139 +  26524999 I

a score=90044.000000
s hg38.chr6_GL000254v2_alt           574660 16 +   4827813 TAGTAAGTTTTTTTTT-
s panTro5.chr6                     29547017 16 + 175400573 TAGTAAGTTTTTTTTT-
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29785273 16 + 173848474 TAGTAAGTTTTTTTTT-
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5588051 15 +   6154872 TAGTGAG-TTTCTTTT-
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     19821 15 +     39990 TAGTGAG-TTTTTTTT-
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29814464 15 + 172585720 TAGTGAG-TTTTTTTT-
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29476766 15 - 170955103 TAGTGAG-TTTTTTTT-
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2463340 15 -   2996164 TAGTGAG-TTTTTTTT-
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             227808 15 +    766320 TAGTGAG-TTTTTTTT-
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28740007 15 -  71996105 TAGTGAG-TTTTTTTT-
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             212309 15 -    352859 TAGTGAG-TTTTTTTT-
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2369494 15 -   3067355 TAGTGAG-TTTTTTTT-
i colAng1.NW_012115566v1          C 0 C 0
s calJac3.chr6                    126588126 15 - 158406734 GAGTGAG-GTTTTTTT-
i calJac3.chr6                    C 0 I 10469
s otoGar3.GL873742                  1968667 16 -   2232465 GAGTAAG-TTTTTGTTT
i otoGar3.GL873742                C 0 C 0
e canFam3.chr35                    26144709 15139 +  26524999 I
e cebCap1.NW_016107522v1             213259 2999 +   3820305 I

a score=158216.000000
s hg38.chr6_GL000254v2_alt           574676 36 +   4827813 CTTTAATCTGCCACATGAGAT--------------Tttttctttttttt-a
s panTro5.chr6                     29547033 37 + 175400573 CTTTAATCTGCCACATGAGAT--------------TTtttcttttttttta
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29785289 36 + 173848474 CTTTAATCTGCCACATGAGTA--------------tttttcttttttta-a
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5588066 40 +   6154872 CTTTAATCTTCCACATGAGATTT---TG-------Tttttctttttttt-a
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     19836 47 +     39990 CTTTAATCTTCCACATGAGATTT---TGTTTTTCTtttttttttttttt-g
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29814479 38 + 172585720 CTTTAATCTTCTACATGAGATTT---TG-------ttttcctttttt---a
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29476781 40 - 170955103 CTTTAATCTTCTACATGAGATTT---TG-------ttttccttttttta-a
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2463355 40 -   2996164 CTTTAATCTTCTACATGAGATTT---TG-------ttttccttttttta-a
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             227823 40 +    766320 CTTTAATCTTCTACATGAGATTT---TG-------ttttccttttttta-a
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28740022 40 -  71996105 CTTTAATCTTCTACATGAGATTT---TG-------TTTTCCTTTTTTTA-A
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             212324 40 -    352859 CTTTAATCTTCTACATGAGATTT---TG-------ttttccttttttta-a
i manLeu1.NW_012099655v1          C 0 C 0
s colAng1.NW_012115566v1            2369509 40 -   3067355 CTTTAATCTTCTACACGAGATTT---TG-------ttttccttttttta-a
i colAng1.NW_012115566v1          C 0 C 0
s otoGar3.GL873742                  1968683 36 -   2232465 GTTTATTTT------TGAAAGTTATGCA-------TTTTGTTTCTTCTA--
i otoGar3.GL873742                C 0 I 1928
e canFam3.chr35                    26144709 15139 +  26524999 I
e cebCap1.NW_016107522v1             213259 2999 +   3820305 I
e calJac3.chr6                    126588141 10469 - 158406734 I

a score=761955.000000
s hg38.chr6_GL000254v2_alt           574712 137 +   4827813 tatactttaagctctggggtacatgtgcagaacttgcaggtttgttacgtaggtatatacatgccatggtg-gtttgctgcacccatcaacctgtcaactacgttaggtatttctcctaatgctatccctcccttacc
s panTro5.chr6                     29547070 137 + 175400573 tatactttaagctctggggtacatgtgcagaacttgcaggtttgttacataggtatacacataccatggtg-gtttgctgcacccatcaacctgtcaactacgttaggtatttctcctaatgctatccctcccctacc
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29785325 137 + 173848474 tatactttaagctctggggtacatgtgcagaacttgcaggtttgttacataggtatacacataccatggtg-gtttgctgcacccatcaacctgtcaactacgttaggtatttctcctaatgctatccctcccctacc
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5588106 137 +   6154872 tatactttaagttctggggtacatgtgcagaacttgcaggtttgttacataggtatacacatgccatggtg-gtttgctgcacccatcaacctctcatctacgttaggtatttcccctaatgctatccctcccctacc
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     19883 137 +     39990 tatactttaagttctgggctacatgtgcagaacttgcaggttcgttgcataggtatacacgtgccatggtg-gtttgctgcacccatcaacctgtcatctacattaggtatttctcctaatgctatccctcccctacc
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29814517 135 + 172585720 tatactttaagttctggggtacatgtgc-aaacttgcagg-ttgttacataggcatacatgtgccatggtgcgtttgctgcacccatc-acctgccatctacattaggtatttatcataatgctatccctcccctacc
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29476821 137 - 170955103 tatactttaagttctggggtacatgtgcaaaacttgcaggtttgttacataggcatacatgtgccatggtg-gtttgctgcacccatcaacctgccatctacattaggtatttatcctaatgctatccctcccctacc
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2463395 137 -   2996164 tatactttaagttctggggtacatgtgcaaaacttgcaggtttgttacataggcatacatgtgccatggtg-gtttgctgcacccatcaacctgccatctacattaggtatttatcctaatgctatccctcccctacc
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             227863 137 +    766320 tatactttaagttctggggtacatgtacaaaacttgcaggtttgttacataggcatacatgtgccatggtg-gtttgctgcacccatcaacctgccatctacattaggtatttatcctaatgctattcctcccctacc
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28740062 137 -  71996105 TACACTTTAAGTTCTGGGGTACATGTGCAAAACTTGCAGGTTTGTTACATAggcatacatgtgccatggtg-gtttgctgcacccatcaacctgccatctacattaggtatttatcctaatgctatccctcccctacc
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099655v1             212364 137 -    352859 tatactttaagttctggggtacatgtgcaaaacttgcaggtttgttacataggcatacatgtgccatggtg-gtttgctgcacccatcaacctgccatctacattaggtatttatcctaatgctatccctcccctaCC
i manLeu1.NW_012099655v1          C 0 I 5174
s colAng1.NW_012115566v1            2369549 137 -   3067355 tatactttaagttctgggttacatgcgcaaaacttgcaggtttgttacatagacatacatgtgccatggtg-gtttgctgcacctatcaacctgtcatctacattaggtatttatcctaatgttttccctcccctacc
i colAng1.NW_012115566v1          C 0 C 0
e canFam3.chr35                    26144709 15139 +  26524999 I
e otoGar3.GL873742                  1968719 1928 -   2232465 I
e cebCap1.NW_016107522v1             213259 2999 +   3820305 I
e calJac3.chr6                    126588141 10469 - 158406734 I

a score=16749810.000000
s hg38.chr6_GL000254v2_alt           574849 3678 +   4827813 ccctcacccccaaacaggccccagtgtgtgatgttcccctacctgtgtccatgtgttctcattgttcagctcct--acttatgagtgagaacatgcaatgtttagttttatgttcttgtgttagtttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaaatcatcttttttatggctgcatagtattccatagtattccatgggtgtatatgtgccaccttttctttatccagtgtattattgatgggcatttgggttagtttcaagtctttgctattgtgaacagtgccacaataaacatacgtgtgcatgtgtctttatagtagaatgatttataatcctttgggtatataccctgtaaagggattcctgggtcaaatggtatttttggttctagatccttgaggaatcgccacactgt-ttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctgtttctccacgtcctctctagcatctgttgtttcctgcctttttaatgatagccattctaactggcatgagatggtatctcattatggttttgattcacatttctctgataaccagtgatgatgagctttttttcatatgtttgttggccacataaatgtcttattttaaaaagtgtctgtcaggccggggcattggctcatgcctgtaatcccagcattttagggggccgcagcaggcagatcacgaggtcaggagattgagaccatcctggctaacatggtgaaactccatctcaactaaaaatacaaacacttagctgggcgtggtgccatgaacctgtaatcccggctactcaggaggctgaggcaggagaatcgcttgaacctggagaatcccaaaagtgtctgttcacatccttcgcccacattttgatgg--ggttgtttgtttttttcttgtaaatttgtttaaattctttgtagattctggatattagccctttgtcagatggata-gattacaaaaattttctcccattctgtag-gttgcctattcactctgctgatgatttcttttcctgtgcagaagctct-ttagtttaatttgatcccatttgtcaattttggcttttgttgtcattgc-ttttgatg-ttttagtcat-gaagtctctgcccatgcctaaatcctgaatggtattgcctaggttttcttcttgggtttttatggtttt---aggtcttacgtttaagtctttaatccatcttgagttaatttttgt-ataaggtataaggaaggagtccagtttcagttttctgcatatggctagccagttttctcaacagcatttattaaataggggattctttccc-cattgcttgttttt-gtcaagtttgtcaaagat-cagatggttgtagatgtgtggcattatttctgaggcc--tctgttctgtt-ctgttggtctatat-atctgttttggcaccagtaacatgctgttttggttactgta-gctttgtagtatactttgaagtcaggtagcatga--tgcttccagctttgttctttttgcttaggattatcttg-gctatgtgggctcttgtttggttccatatgaaatttaaagtag-ttttttcctattctgtgaagaaagtcaatggtaacttgatggggatagcattgaatctataaattactttgggcagtatggccatttttcatgatattgattcttcctacccatgaggatggaatgtttttccatttgtttgtgccctctctccttgagcagtggtttgtagttctccttgaagaggtccttcacataccttgtaagttgtattcctgggtattttattctctttgtagcagttatgaatgggagttcactcatgatttggctctctgt-ttttt-------ttattattggtgtataggaatgcttgtggtttttgcacattgattttgtatcctgagactttgctgaaattgcttataagcttaaggagattttgggctgagacgatggggttttctaagtatagaatcatgtcatctgcaaacagagacaatttgaattcctctctttctatttgaatacc-tttta--tttttttc-tcttgcctgattgccctggccagaacttccaacattatgttgaataagagtggtgagagagggcatccttgtcttgtgacagttttctcagggaatgcttccaggttttgcccattcagtatgatattggctgtga--------------------gtttgtcatagatagcttttattattttgagatacattccatcaatatctagtttattgagagtttttagcatgaagggctgctgaattttgtcgaaggccttttctgcatctattgagataatcatgtggtttttgtcattggttctgtttatgtgatagattccatttattgatttgcatat-ttgaatcagctttgcatcccaggaatgaagctgacttgatcatggtagatgagctttttgatgtgctgctggattcggtttgccagtattttattgaggattttcacatcaatgttcatcagggatattggcctgaaattttctttttttgttgtgtctctgccaggttttggtatcaggttgatgctggcctcataaaatgagttatggaggattccctctttttctattgtttggaatattttcagaaggaatggtaccagctcctttttgtacttgcggtagaattcgtctgtgaatctgtctggttctgggcttttcttggttggtaggctattaactactacctccatttcagaacttgttattggtctattcaggcattagacttcttcctggtttagtcttggaagggtttatgtgtccaggcatttatccattttttctagattttctagtttatttgcatagagatgtttatagtattccctgatggtagtttctatttctgtgggatcagcagtgatatgccatttatca-tttttatagtgtcta-ttgatttttctctcttgtcttctttattagtctggctagcagtctactttgtt-aattatttcaaaaaaacc-agctcctggattcattg-attttttg--aatttttt------tg-----tgtgtgtctctatctccttcatttctgctctgatcttagttatttcttgtcttctgctagcttttgaatttgttttctcttgtttctctagttgttttaattgcgatattagagtgtcgattttagatctttcctgctttctcctgtgggcatttagtgctataaatttccctttaaacactgccttagctgtactcctgcagctagctcagtctctgcgcaaacagccgcccagttttgtgcttgaaacccaggaccccagtagcgtaggcacccaagggaatctactgttctgtggtttgcgaaatccatgggaaaagcgtagtatctgggctggagtgcactgttcctcatggctcagtccctcatggcttcccttggctaggggagggagtt-gtctgaccccttgcgcttccc-gggtgaggcgatgcccca--ccctgcttcggctagccctccctgggctgcacccactgtctaaccagtccctgtgagattag-tcgggtatctcagttagaaatgcagaaatcatctggcttctgcat-----tgatctcagtgggagctgcagaccgaagctgtttctattccaccatctttccagccaccCACACTGATTTCT
s panTro5.chr6                     29547207 3676 + 175400573 ccctcacccccaaacaggccccagtgtgtgatgttcccctacctgtgtccatgtgttctcattgttcagctcct--acttatgagtgagaacatgcaatgtttagttttatgttcttgtgttagtttgctgagaatgatgatttccagcttcatccatgtccctgcaaaggacatgaaatcatcttttttatggctgcatagtattccatagtattccatgggtgtatatgtgccatcttttctttatccagtgtattattgatgggcatttgggttggtttcaagtctttgctattgtaaacagttccacaataaacatatgtgtgcatgtgtctttatagtagaatgatttataatcctttgggtatataccctgtaaagggattcctgggtcaaatggtatttttgattctagatccttgaggaattgccacactgt-ttccacaatggttgaactagtttacagtcccaccaacaatgtaaaagtgttcctgtttctccacgtcctctctagcatctgttgtttcctgcctttttaacgatagccattctaactggcatgagatggtatctcattatggttttgattcgcatttctctgatgaccagtgatgatgagctttttttcatatgtttgttggccacataaatgtcttattttaaaaagtgtctgtcaggccagggcattggctcatgcctgtaatcacagcattttagggggctgcagtgggcagatcatgaggtcaggagattgagaccatcctggctaacatggtgaaactccatctcaactaaaaatacaaaaacttagctgggcgtggtgccatgcacctgtaatcccggctactcaggaggctgaggcaggagaatcgcttgaacctggagaatccaaaaagtgtctgttcacatcctttgcccacattttgatgg--ggttgtttgtttttttcttgtaaatttgtttaaattctttgtagattctggatattagccctttgtcagatggata-gattacaaaaatgttctcccattctgtag-gttgcctattcactctgctgatggtttcttttgctgtgcagaagctct-ttagtttaatttgatcccatttgtcaattttggcttttgttgtcattgc-ttttgatg-ttttagtcat-gaagtctctgcccatgcctaaatcctgaatggtattgcctaggttttcttcttgggtttttatggtttt---aggtcttacgtttaagtctttaatccatcttgagttaatttttgt-ataaggtataaggaaggagtccagtttcagttttctgcatatggctagccagttttctcaacagcatttattaaataggggattctttccc-cattgcttgttttt-gtcaagtttgtcaaagat-cagatggttgtagatgtgtggcattatttttgaggcc--tctgttctgtt-ctgttggtctatat-atctgttttggtaccagtaccatgctattttggttactgta-gctttgtaatatactttgaagtcaggtagcatga--tgcttccagctttgttctttttgcttaggattatcttg-gctatgtgggctcttgtttggttccatatgaaatttaaagtag-ttttttcctattctgtgaagaaagtcaatggtaacttgatggggatagcattaaatctataaattactttgggcaatatggccatttttcatgatattgattcttcctacccatgaggatggaatgtttttccatttgtttgtgccctctctccttgagcagtggtttgtagttctccttgaagaggtccttcacatgccttgtaagttgtattcctgggtattttattctctttgtagcagttatgaatgggagttcactcatgatttggctctctgt-ttttt-------ttattattggtgtataggaatgcttgtggtttttgcacattgattttgtatcctgagactttgctgaaattgcttataagcttaaggagattttgggctgagatgatggggttttctaagtatagaatcatgtcatctgcaaacagagacaatttgaattcctctctttctatttgaatacc-tttta--tttttttc-tcttgcctgattgccctggccagaacttccaacattatgttgaataagagtggtgacagagggcatccttgtcttgtgacagttttctcagggaatgcttccagcttttgcccattcagtatgatattggctgtga--------------------gtttgtcatagatagcttttattattttgagatacattccatcaatatctagtttattgagagtttttagcatgaagggctgttgaattttgtcgaaggccttttctgcatctattgagataatcatgtggtttttgtcattggttctgtttatgtgatagattccatttattgatttgcatat-ttgaatcagctttgcatcccagggatgaagctgacttgatcatggtagatgag-tttttgatgtgctgctggattcggtttgccagtattttattgaggattttcacatcaatgttcatcagggatattggcctgaaattttctttttttgttgtgtctctgccaggttttggtatcaggttgatgctggcctcataaaatgagttatggaggattccctctttttctattgtttgaaatattttcagaaggaatggtaccagctcctttttgtacttgcggtagaattcggctgtgaatctgtctggttctgggcttttcttggttggtaggctattaattactacctcaatttcagaacttgttattggtctattcaggcattagacttcttcctggtttagtcttggaagggtttatgtgtccaggcatttatccattttttctagattttgtagtttatttgcatagagatgtttatagtattccctgatggtagtttctatttctgtgggatcagcagtgatattccatttatca-ttttcatagtatcta-ttgatttttctctcttgtcttctttattagtctggctagcagtctactttgtt-aattatttcaaaaaaacc-agctcctggattcattg-attttttg--aatttttt------tg-----tgtgt--ctctatctccttcatttctgctctgatcttagttatttcttgtcttctgctagcttttgaatttgttttctcttgcttctctagttcttttaattgcgatattagggtgtcgattttagatctttcctgctttctcctgtgggcatttagtgctataaatttccctttaaacactgccttagctgTactcttgcagctagctcagtctctgcccaaaaagccgcccagttttgtgcttgaaacccaggaccccagtagcgtaggcacccaagggaatctactgttctgtggtttgcgaaatccatgggaaaagcgtagtatctgggctggagtgcactgttcctcatggctcagtccctcatggcttcccttggctaggggagggagtt-gtctgaccctttgcgtttccccgggtgaggcgatgcccca--ccctgcttcggctagccctccctgggctgcacccactgtctaaccagtcccagtgaggttag-tcgggtatctcagttagaaatgcagaaatcatctggcttctgcac-----tgatctcagtgggagctgcagaccgaagctgtttctattccaccatctttccagccaccCACACTGATTTCT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29785462 3675 + 173848474 ccctcacccccaaacaggccccagtgtgtgatgttcccctacctgtgtccatgtgttctcattgttcagctcct--acttatgagtgagaacatgcaatgtttagttttatgttcttgtgttagtttgctgagaatgatgatttccagcttcatccatgtccctgcaaaggacatgaaatcatcttttttatggctgcatagtattccatagtattccatgggtgtatatgtgccatcttttctttatccagtgtattattgatgggcatttgggttggtttcaagtctttgctattgtaaacagtgccacaataaacatatgtgtgcatgtgtctttatagtagaatgatttataatcctttgggtatataccctgtaaagggattcctgggtcaaatggtatttttgattctagatccttgaggaattgccacactgt-ttccacaatggttgaactagtttacagtcccaccaacaatgtaaaagtgttcctgtttctccacgtcctctctagcatctgttgtttcctgcctttttaacgatagccattctaactggcatgagatggtatctcattatggttttgattcgcatttctctgatgaccagtgatgatgagctttttttcatatgtttgttggccacataaatgtcttattttaaaaagtgtctgtcaggccagggcattggctcatgcctgtaatcccagcattttagggggctgcagtgggcagatcatgaggtcaggagattgagaccatcctggctaacatggtgaaactccatctcaactaaaaatacaaaaacttagctgggcgtggtgccatgcacctgtaatcccggctactcaggaggctgaggcaggagaatcgcttgaacctggagaatccaaaaagtgtctgttcacatccttcgcccacattttgatgg--ggttgtttg-ttttttcttgtaaatttgtttaaattctttgtagattctggatattagccctttgtcagatggata-gattacaaaaatgttctcccattctgtag-gttgcctattcactctgctgatggtttcttttgctgtgcagaagctct-ttagtttaatttgatcccatttgtcaattttggcttttgttgtcattgc-ttttgatg-ttttagtcat-gaagtctctgcccatgcctaaatcctgaatggtattgcctaggttttcttcttgggtttttatggtttt---aggtcttacgtttaagtctttaatccatcttgagttaatttttgt-ataaggtataaggaaggagtccagtttcagttttctgcatatggctagccagttttctcaacagcatttattaaataggggattctttccc-cattgcttgttttt-gtcaagtttgtcaaagat-cagatggttgtagatgtgtggcattatttttgaggcc--tctgttctgtt-ctgttggtctatat-atctgttttggtaccagtaccatgctattttggttactgta-gctttgtagtatactttgaagtcaggtagcatga--tgcttccagctttgttctttttgcttaggattatcttg-gctatgtgggctcttgtttggttccatatgaaatttaaagtag-ttttttcctattctgtgaagaaagtcaatggtaacttgatggggatagcattgaatctataaattactttgggcaatatggccatttttcatgatattgattcttcctacccatgaggatggaatgtttttccatttgtttgtgccctctctccttgagcagtggtttgtagttctccttgaagaggtccttcacatgccttgtaagttgtattcctgggtattttattctctttgtagcagttatgaatgggagttcactcatgatttggctctctgt-ttttt-------ttattattggtgtataggaatgcttgtggtttttgcacattgattttgtatcctgagactttgctgaaattgcttataagcttaaggagattttgggctgagatgatggggttttctaagtatagaatcatgtcatctgcaaacagagacaatttgaattcctctctttctatttgaatacc-tttta--tttttttc-tcttgcctgattgccctggccagaacttccaacattatgttgaataagagtggtgagagagggcatccttgtcttgtgacagttttctcagggaatgcttccagcttttgcccattcagtatgatattggctgtga--------------------gtttgtcatagatagcttttattattttgagatacattccatcaatatctagtttattgagagtttttagcatgaagggctgttgaattttgtcgaaggccttttctgcatctattgagataatcatgtggtttttgtcattggttctgtttatgtgatagattccatttattgatttgcatat-ttgaatcagctttgcatcccagggatgaagctgacttgatcatggtagatgag-tttttgatgtgctgctggattcagtttgccagtattttattgaggattttcacatcaatgttcatcagggatattggcctgaaattttctttttttgttgtgtctctgccaggttttggtatcaggttgatgctggcctcataaaatgagttatggaggattccctctttttctattgtttgaaatattttcagaaggaatggtaccagctccttttagtacttgcggtagaattcgactgtgaatctgtctggttctgggcttttcttggttggtaggctattaattactacctcaatttcagaacttgttattggtctattcaggcattagacttcttcctggtttagtcttggaagggtttatgtgtccaggcatttatccattttttctagattttgtagtttatttgcatagagatgtttatagtattccctgatggtagtttctatttctgtgagatcagcagtgatattccatttatca-ttttcatagtatcta-ttgatttttctctcttgtcttctttattagtctggctagcagtctactttgtt-aattatttcaaaaaaacc-agctcctggattcattg-attttttg--aatttttt------tg-----tgtgt--ctctatctccttcatttctgctctgatcttagttatttcttgtcttctgctagcttttgaatttgttttctcttgcttctctagttcttttaattgcgatattagggtgtcgattttagatctttcctgctttctcctgtgggcatttagtgctataaatttccctttaaacactgccttagctgTactcttgcagctagctcagtctctgcccaaaaagccgcccagttttgtgcttgaaacccaggaccccagtagcgtaggcacccaagggaatctactgttctgtggtttgcgaaatccatgggaaaagcgtagtatctgggctggagtgcactgttcttcatggctcagtccctcatggcttcccttggctaggggagggagtt-gtctgaccctttgcgtttccccgggtgaggcgatgcccca--ccccgcttcggctagccctccctgggctgcacccactgtctaaccagtcccagtgagattag-tcgggtatctcagttagaaatgcagaaatcatctggcttctgcac-----tgatctcagtgggagctgcagaccgaagatgtttctattccaccatctttccagccaccCACACTGATTTCT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5588243 3683 +   6154872 ccctcacccccaaacaggccccagtgtgtgatgttcccctacctgtgtccatgtgttctcattgttcagctcct--acttatgagtgagaacatgcaatgtttagttttctgttcttgtgttagtttgctgaaaatgatgctttccagcttcatccatgtccctgcaaaggacatgaaatcatcttttttatggctgcatagtattccatagtattccatgggtgtatatgtgccatcttttctttatccagtgtattattgatgggcatttgggttggtttcaagtctttgctattgtgaacagtgccacaataaacatatgtgtgcatgtgtctttatagtagaatgatttataatcctttgggtatataccctgtaaagggattcttgggtcaaatggtatttttggttctagatccttgaggaatcgccacactgt-ttccacaatggttgaactactttacagtcccaccaacagtgtaaaggtgttcctatttctccatgtcctctctagcatctgttgtttcctgcctttttaatggtagccattctaactggcatgagatggtatctcactatggttttgattcacatttctctgatgaccagtgatgatgagctttttttcatatgtttgttggccacataaatgtcttattttaaaaagtgtctgtcaggccggggcattggctcatgcctgtaatcccagcattttagggggccgcagcgggcagatcacgaggtcaggagattgagaccatcctggctaatgtgatgaaactccatctcagctaaaaatacaaaaacttagctgggcgtggtgccatgcacctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctggagaatcccaaaagtgtctgttcacatcctttgcccacattttgatgg--ggttgtttgtttttttcttgtaaatttgtttaaattctttgtagattctggatattagccctttgtcagatggata-gattacaaaaattttctcccgttctgtag-gttgcctattcactctgctgatggtttcttttgctgtgcagaagctct-ttagtttaatttgatcccatttgtcaattttggcttttgttgtcattgc-ttttgatg-ttttagtcat-gaagtctctgcccatgcctaaatcctgaatggtattgcctaggttttcttcttgggtttttatggtttt---aggtcttacgtttaagtctttaatccatcttgagttattttttgt-ataaggtataaggaaggagtccagtttcagttttctgcatatggctagacagttttctcaacagcatttattaaataggggattctttccc-cattgcttgttttt-gtcaagtttgtcaaagat-cagatggttgtagatgtgtggcattatttctgaggcc--tctgttctgtt-ctgttggtctatat-atctgttttggtaccagtaacatgctgttttggttactgta-gctttgtagtatactttgaagtcaggtagcatga--tgcttccagctttgttctttttgcttaggattgtcttg-gctgtgtgggctcttgtttggttccatatgaaatttaaagtagtttttttcctattctgtgaagaaagtcaatggtaacttgatggggatagcattgaatctataaattactttgggcagtatggccatttttcatgatattgattcttcctacccatgaggatggaatgtttttccatttgtttgtgccctctctccttgagcagtggtttgtagttctccttgaagaggtccttcacatgccttgtaagttgtattcctgggtattttattctctttgtagtagttatgaatgggagttcactcatgatttggctctctgt-ctttt-------ttattattggtgtataggaatgcttgtggtttttgcacattgattttgtatcctgagactttgctgaaattgcttataagcttaaggagattttgggctgagacgatggggttttctaagtatagaatcatgtcatctgcaaacagagacaatttgaattcctctctttctatttgaatacc-tttta--tttttttc-tcttgcctgattgccctggccagaacttccaacattatgttgaataagagtggtgagagagggcatccttgtcttgtgacagttttctcagggaatgcgtccagcttttgcccattcagtatgatattggctgtga--------------------gtttgtcatagatagcttttattactttgagatacattacatcaatatctagtttattgagagtttttagcatgaagggctgttgaattttgtcgaaggccttttctgcatctattgagataatcatgtggtttttgtcatgggttctgtttatgtgatagattccatttattgatttgcatat-tttaatcagctttgcatcccagggatgaagctgacttgatcatggtagatgagctttttgatgtgctgctggattcggtttgcctgtattttattgaggattttcacatcaatgttcatcagggatattggcctgaaattttctttttttgttgtgtcttggccaggttttggtgtcaggttgatgctggcctcataaaatgagttatggaggattccctctttttctatcgtttggaatattttcagaaggaatggtaccagctcctttttgtacttgtggtagaattcggctgtgagtctgtctggttctgggcttttcttggttggtaggctattaattac-gcctcaatttcagaacttgttattggtctattcaggcattagacttcttcctggtttagtcttggaagggtttatgtgtccaggcatttatccattttttctagattttccagtttatttgcatagagatgtttatagtattccctgatggtagtttctatttctgtgggatcagcagtgatattccatttatca-tttttatagtgtctatttgatttttctctcttgtcttctttattagtctggctagcagtctactttgtt-aattatttcaaaaaaacc-agctcctggattcattg-attttttg--aatttttttttttgtg-----tgtgt--ctctatctccttcatttctgctctgatcttagttatttcttgtcttctgctagcttttgaatttgttttctgttgcttctctagttcttttaattgcgatattagggtgtcgattttagatctttcctgctttcttctctggggatttagtgctataaatttccctttaaacactgccttagctgtactcctgcagctagctcagtctctgcccaaacagccgcccagttttgtgcttgaaacccaggaccccagtagcgtaggcacccgagggaatctactgttctgtggtttgcgaaatccgtggaaaaagcgtagcatctgggctggagtgcactgttcctcatggctcagtccctcatggcttcccttggctaggggagggagtt-gtctgaccccttgcgcttccc-gggtgaggcgatgcccca--ccctgcttcggctagccctccctgggctgcacccactgtctaaccagtcccagtgagattag-tcgggtatctcagttagaaatgcagaaatcatctggcttctgcat-----tgatctcagtgggagctgcagaccgaagctgtttctattccaccatctttccagccaccCACACTGATTTCT
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     20020 3667 +     39990 ccctcacccccaaacaggccctggtgtgtgatgttcccctacctgtgtccatgtgttctcattgttcaactccc--acttatgagtgagaacatgcaatgtttggttttctgttcttgtgttagtttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacaagaaatcatcttttttatggctgcataatattccatagtattccatgggtgtatatgtgccaccttttctttatccagtgtattattgatgggcatttgggttggtttcaagtctttgctattgtgaacagtgccacaataaacataagtgtgcatgtgtctttatagtagaatgatttataatcctttggttatataccctgtaaagggattgctgggtcaaatggtatttctggttctagatccttgaggaatcgccacactgt-ttccacaatggttgaactaatttacactcccaccaacagtgtaaaagtgtttctatttctccacatcctctccagcacctgttgtttcctgcctttttaatgatagccattctaactggcatgagatggtatctcattatggttttgattcgcatttctctgatgaccagtaatgatgagctttttttcatatgtttgttggccacataaatgtcttatttttaaaagtgtctgtcaggccggggcattggctcatgcctgtaatcccagcattttagggggccacagcgggcagatcacgaggtcaggagattgagaccatcctggctaacatggtgaaactccatctcaactaaaaatacaaaaaattagctgggcgtggtgccatggacctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctggagaatcc------tgtctgttcacaaccttcacctacattttgatgg--gattgtttgtttttttcttgtaaatttgtttaaattctttttagattctggatattagccctttgtcagatggata-gattacaaaaattttctcccattctgtag-gttgcctattcactctgctgatggtttcttttgctgtgcagaagctct-ttagtttaatttgatcccatttgtcaattttggcttttgttgtcattac-ttttgatg-ttttagtcat-gaagtctctgcccatgcctatatcctgaatggtattgcctaggttttcttcttgggtttttatggtttt---aggtcttacgtttaagtctttaatccatcttgagttaatttttgt-gtaacgtgtaaggaaggagtccagtttcagttttctgcttgtggctagccagttttctcaacagcatttattaaatagggaattctttccc-cattgcttgttttt-gtcaagtttgtcaaagat-tagatggttgtagatgtgtggcattatttctgaggcc--tctgttctgtt-ctattggtctatat-atctgttttggtaccagtgacatgctgttttggttactgta-ggcttgtagtatagtttgaattcaggtagcatga--tgcttccagctttgttctttttgcttaggattgtcttg-gctatgtgggctcttgtttggttccatatgaaatttaaagtag-ttttttcctattctgtgaagaaagtcaatggtaacttgatggggataacattgaatctataaattactttgggcagtatggccg-ttttcatgatattgattcttcctacccatgaggatggaatgtttttccatttgtttgtgccctctctccttgagcactggtttgtagttctccttgaagaggtccttcacatgccttgtaagttgtattcctgggtattttattctctttctagcaattatgaatgggagttcattcatgatttggctctc-----tttt-------ttattattggtgtataggaatgtttgtgggttttgcacattgattttgtatcctgagactttgctgaaattgcttatgagcttaaggagatttggggctgagacgatggggttttctaagtatagaatcatgtcatctgcaaacagagacaatttgaattcctgtctttctatttgaatact-tttta--tttttttc-tcttgcctgattgccctggccagaacttccaacactatgttgaataagagtggtgagagaggggatccttgtcttgtgacagttttctcagggaatgcttctagcttttgcccattcagtatgatattggctgtgg--------------------gtttgtcatagatagcctttattattttgagatacattccatcaatatctagtttattgagagtttttagcatgaagggctgttgaattttgtcgaaggccttttctgcatctattgagataatcatgtggtttttgtcattggttctgtttatgtgatagattccatttattgatttgcatat-ttgaatcagctttgcatcccagggatgaagctgacttgatcatggtaaatgagctttttgatgtgctgctggattcggtttgccagtattttactgaggattttcacatcaatgttcatcagggatattggcctgaaattttctttttttgttgtgtctctgccaggttttggtatcaggttgatgctggcctcataaaatgagttatggaggattccctctttttctattgtttggaatattttcagaaggaatggtaccagctcctttttgtacttgcggtagaattcagctgtgaatctgtctggttctgggcttttcttggttagtaggctattaattactgcctcagtttcagaacttgttattggtctattcaggcattagacttcttcctggtttagtcttgggagggtttatgtgtccaggcatttatccattttttctagattttctagtttatttgcatagagatgtttatagtattccctgatggtaatttgtatttctgtgggatcagcagtgatattccatttatca-tttttatagtgtctatttgatttttctctcttgtcttctttattagtctggctagcattctactttgtt-aattatttcaaaaaaaac-agctcctggattcattg-attttttg-aaaattttt------tt-----tgggt--ctctatctcctacatttctgccctgatcttagttctttcttgctttctgctagcttttgaatttgttttctcttgcttctctagttcttttaattgcgatattagggtgtcgattttagatctttcctgctttctcctgtgggcatttagtgctataaatttccctttaaacactgtcttagctgTactcctgcagctaactcagtctctgcccaaacagccgcccagttttgtgcttgaaatccaggaccccagtagcgtaggcacccgacggaatctactattctgtggtttgcgaaatccgtgggaaaagcgtagtatctgggctggagtgcactgttcctcgcggctcagtccctcatggctttccatggctaggggagggagtt-gtctgaccccttgagcttccc-gggtgaggcgatgcccca--ccctgctttggctagccctccgtgggctgcacccaccgtctaaccagtcccagtgagattag-ccgagtatctcagttagaaatgcagaaatcatctggcttctgcat-----tgatctcagtgggagttgcagaccgaagctgtttctattccaccatctttccagccaccCACACTGATTTCT
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29814652 3649 + 172585720 cccttaccccccaacaggccctggtgtgtgatgttcctctacctgtgtccatgagttctcactgttgaactccc--acttatgagtgagaacatgcactgtttcgttttctgttcttgtgttagtttgctgagaatgatagtttccagcttcatccatgtgcctgcaaaggacatgaactcatc-cttttatgactg----------catagtattccatgggtgtatatgtgccacattttctttatccagtctatcattgatgggcatttgggttggtttcaagtctttgctattgtgaacagagccacaataaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttgggtatataccctgtaatgggattgctgggtcaaatggtatttctggttctagatccttgaggaatcgccactctgtcttccacaatggttgaattaatttacactcctaccaacagtgtaaaagtgtttttatttctccacatcatctctaacatctgttgtttcctgcctttttaatgacagccattctaactggcatgagatggtatctcattatggttttgatttgcatttctctgatgaccaatgatgatgagctttttttcatatgtttgttggccgcataaatgtcttcttttagaaagtgtctgtcgggccagggccgtggctcatgcctgtaatcccagcactttggaggggcacggcaggcagatcacgaggtgaggagattgagaccatcctggctaacatggtgaaactccatctcaactaaaaatacaaaaaattagctgggcatggtgccatgcacctgtaatctcagctactcaggaggctgaggaaggagaatcacttgaacccggagaatcccaaaagtgtctgttcatattcttcacccacattttgatgg-----tttttttttttttcttgtaaatttgtttaagttctttgtagattctgggtattagccctttgtcaaatggata-gattacaaaaattttctcccattctgtag-gctgcctattcactc-gatcatagtttcttttgctgtgcagaagctct-ttagtttcattagatcctatttgtcaattttggcttttgttgccattgc-ttttgatg-ctttagtcat-gaagtctctgcccatgcctatgtcctgaatggtattgcctaggttttcttgtagggtttttatggtttt---aggtcttatgtttaagtctttaatccatcttgagttaatttttgt-ataaggtgtaaggaaggagtccagtttcagttttctgcatatagctagccagttttctcaacagcatttattaaatagggaattctttccc-cattgcttgttttt-atcaagtttatcaaagat-cagatagttgtagatgtgtggcattatttctgaagcc--tctgttctgtt-atattggtctatat-atctgttttggtaccagtaccatgctgttttggttactata-gcattgtggtatagtttgaagtcagatagcatga--tgcctccagctttgttctttttgcttcggattgtcttg-gctatgtgggctctttcttggttccatatgaaatttaaagtag-ttttttcctattctgtgaagaaagtcaatggtagcttgatggggatagcattgaatgtataaattactttgggcagtatggcca-ttttcacaatattgattcttcctgcccatgaggatggaacgtttttccatttgtttgtgtcctctgtccttgagcagtggtttgtagttctccttgaagaagtccttcacatgccttgtaagttgtattcctgggtattttattctctttgcagcaattgtgaatgggagttcactcatgatttgggtctct---tttttattattattattattggtgtataggaatgcctgtggtttttgcatgttgattttgtatcctgagactttgctgaaattgcttataagcttaaggagatttggggctgagattatggggttttctaaatatagaatcatgtcacctgcaaacagagacaatttgacttcct-tctttatatttgaatacc-tttta--ttttttttgtctttcctgattgccctgtccagaacttccaacactatgttgaataggagtgttgagagacggcatccttgtcttgtgacagttttcacagggaatgattccagcttttgcccattcagtatgatattggctgtggnnnnnnnnnnnnnnnnnnnn--------------------------------------ccatcaatccctagtttattgagagtttttagcatgaagcggtgttgaattttattgaaaccctttcctgcatctattgagataatgatgtggtttttgtcattggttctgtttatgtgatggattgcatttattgatttgcatatgttgaatcaaccttgcatcccagggatgaagctgacttgatcatggtagataagctttttgatgcactgctggatttggtttgccagtatttcattgaggattttcacatcaatgttcattagggatattggcctgaaattttccttttttattgtgtttcggcaaggttttggtatcaggttgatgctgtcctcataaaatgagttatggaggatttcctctttttctgttgtttggaatagtttcagaaggaatggtaccagctcctttttatacttctggtagaattcggctgtgaatccatctggttctgggcttttctttgttggtaggctattaattactgccttaatttcagaacttgttattggtct-ttcagggattagatttcttcctggtttagtcttgggagggtttatgtgtccaggcatttatccattttttctagattttctagtttatttgcatagagatgtttatagtattccttgatggtagtttatatttctgtgggatcagcagtgatattccatttatcattttttgtagtgtctatttgatttttctctcttctcttctttattagtctggctagtggtctactttgttaaattttttcaaaaaaaccgagctgctgaattcattg-tttttttt--atttttat------tt-----tttgt----ttatctccttcatttctgctctgatcttagttatttcttgtcttctgctagcttttgaattttttttctcttgcttctgtagttcttttaattgtaacgttagggtgttgagtttagatctttcctgctttctcttgtgggcatttagtgctataaatttccctttaaacactaccttagcAGTactactgcagctagctcagtcactgcccaaacggccgcccagttttgtgcttgaaacccagggccccggtagcataggcacccgagggaatctcctgttcc-tggtttgtgaaatctgtgggaaaagcgtagtatct-agcaggagtgcactgttcctcacagcccagtccctcatggcttcccttgactaggaaagggagttggtcccacccgttgggcttcct-gggtgaggcgatacccca--ccctgctttggctagccctccgtgggctgcacccactgtctaaccagtcctagtgagattag-ccgggtacctcagttggaaatgcagaaatcatccaccttctgcat-----tgatctcagtgggagctgcggcccgaagctgtttctattcggccatcttcccagccacccacactgacttct
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29476958 3668 - 170955103 cccttaccccccaacaggccctggtgtgtgatgttcctctacctgtgtccatgagttctcactgttgaactccc--acttatgagtgagaacatgcactgtttcgttttctgttcttgtgttagtttgctgagaatgatagtttccagcttcatccatgtgcctgcaaaggacatgaactcatc-cttttatgactg----------catagtattccatgggtgtatatgtgccacattttctttatccagtctatcattgatgggcatttgggttggtttcaagtctttgctattgtgaacagagccacaataaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttgggtatataccctgtaatgggattgctgggtcaaatggtatttctggttctagatccttgaggaatcgccactctgtcttccacaatggttgaattaatttacactcctaccaacagtgtaaaagtgtttttatttctccacatcatctctaacatctgttgtttcctgcctttttaatgacagccattctaactggcatgagatggtatctcattatggttttgatttgcatttctctgatgaccaatgatgatgagctttttttcatatgtttgttggccgcataaatgtcttcttttagaaagtgtctgtcgggccagggccgtggctcatgcctgtaatcccagcactttggaggggcacggcaggcagatcacgaggtgaggagattgagaccatcctggctaacatggtgaaactccatctcaactaaaaatacaaaaaattagctgggcatggtgccatgcacctgtaatctcagctactcaggaggctgaggaaggagaatcacttgaacccggagaatcccaaaagtgtctgttcatattcttcacccacattttgatgg-----tttttttttttttcttgtaaatttgtttaagttctttgtagattctgggtattagccctttgtcaaatggata-gattacaaaaattttctcccattctgtaa-gctgcctattcactc-gatcatagtttcttttgctgtgcagaagctct-ttagtttcattagatcctatttgtcaattttggcttttgttgccattgc-ttttgatg-ctttagtcat-gaagtctctgcccatgcctatgtcctgaatggtattgcctaggttttcttgtagggtttttatggtttt---aggtcttatgtttaagtctttaatccatcttgagttaatttttgt-ataaggtgtaaggaaggagtccagtttcagttttctgcatatagctagccagttttctcaacagcatttattaaatagggaattctttccc-cattgcttgttttt-atcaagtttatcaaagat-cagatagttgtagatgtgtggcattatttctgaagcc--tctgttctgtt-atattggtctatat-atctgttttggtaccagtaccatgctgttttggttactata-gcattgtggtatagtttgaagtcagatagcatga--tgcctccagctttgttctttttgcttcggattgtcttg-gctatgtgggctctttcttggttccatatgaaatttaaagtag-ttttttcctattctgtgaagaaagtcaatggtagcttgatggggatagcattgaatctataaattactttgggcagtatggcca-ttttcacaatattgattcttcctgcccatgaggatggaatgtttttccatttgtttgtgtcctctgtccttgagcagtggtttgtagttctccttgaagaagtccttcacatgccttgtaagttgtattcctgggtattttattctctttgcagcaattgtgaatgggagttcactcatgatttggctctct---tttttattattattattattggtgtataggaatgcctgtggtttttgcatgttgattttgtatcctgagactttgctgaaattgcttataagcttaaggagatttggggctgagattatggggttttctaaatatagaatcatgtcacctgcaaacagagacaatttgacttcct-tctttatatttgaatacc-tttta--ttttttttgtctttcctgattgccctgtccagaacttccaacactatgttgaataggagtgttgagagacggcatccttgtcttgtgacagttttcacagggaatgattccagcttttgcccattcagtatgatattggctgtgg--------------------gtttgtcatagatagctcttattattttgagatacattccatcaatccctagtttattgagagtttttagcatgaagcggtgttgaattttattgaaaccctttcctgcatctattgagataatgatgtggtttttgtcattggttctgtttatgtgatggattgcatttattgatttgcatatgttgaatcaaccttgcatcccagggatgaagctgacttgatcatggtagataagctttttgatgcactgctggatttggtttgccagtatttcattgaggattttcacatcaatgttcattagggatattggcctgaaattttccttttttattgtgtttcggcaaggttttggtatcaggttgatgctgtcctcataaaatgagttatggaggatttcctctttttctgttgtttggaatagtttcagaaggaatggtaccagctcctttttatacttctggtagaattcggctgtgaatccatctggttctgggcttttcttggttggtaggctattaattactgccttaatttcagaacttgttattggtct-ttcagggattagatttcttcctggtttagtcttgggagggtttatgtgtccaggcatttatccattttttctagattttctagtttatttgcatagagatgtttatagtattccttgatggtagtttatatttctgtgggatcagcagtgatattccatttatcattttttatagtgtctatttgatttttctctcttctcttctttattagtctggctagtggtctactttgttaaattttttcaaaaaaaccgagctgctgaattcattgttttttttt--atttttat------tt-----tttgt----ttatctccttcatttctgctctgatcttagttatttcttgtcttctgctagcttttgaattttttttctcttgcttctgtagttcttttaattgtaacgttagggtgttgagtttagatctttcctgctttctcttgtgggcatttagtgctataaatttccctttaaacactgccttagcAGTactactgcagctagctcagtcactgcccaaacggccgcccagttttgtgcttgaaacccagggccccggtagcataggcacccgagggaatctcctgttcc-tggtttgtgaaatctgtgggaaaagcgtagtatat-agcaggagtgcactgttcctcacagcccagtccctcatggcttcccttgactaggaaagggagttggtcccacccgttgggcttcct-gggtgaggcgatacccca--ccctgctttggctagccctccgtgggctgcacccactgtctaaccagtcctagtgagattag-ccgggtacctcagttggaaatgcagaaatcatccaccttctgcat-----tgatctcagtgggagctgcggcccgaagctgtttctattcggccatcttcccagccacccacactgacttct
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2463532 3683 -   2996164 cccttaccccccaacaggccctggtgtgtgatgttcctctacctgtgtccatgagttctcattgttgaactccc--acttatgagtgagaacatgcactgtttcgttttctgttcttgtgttagtttgctgagaatgatagtttccagcttcatccatgtgcctgcaaaggacatgaactcatc-cttttatgactg----------catagtattccatgggtgtatatgtgccacattttctttatccagtctatcattgatgggcatttgggttggtttcaagtctttgctattgtgaacagagccacaataaacatacatgtgcatgtgtctttatagtagaatgatttgtaatcctttgggtgtataccctgtaatgggattgctgggtcaaatggtatttctggttctagatccttgaggaatcgccactctgtcttccacaatggttgaattaatttacactcctaccaacagtgtaaaagtgtttttatttctccacatcatctctaacatctgttgtttcctgcctttttaatgacagccattctaactggcatgagatggtatctcattatggttttgatttgcatttctctgatgaccaatgatgatgagctttttttcatatgtttgttggccgcataaatgtcttcttttagaaagtgtctgtcgggccagggccgtggctcatgcctgtaatcccagcactttggaggggcacggcaggcagatcacgaggtgaggagattgagaccatcctggctaacatggtgaaactccatctcaactaaaaatacaaaaaattagctgggcatggtgccatgcacctgtaatctcagctactcaggaggctgaggaaggagaatcacttgaacccggagaatcccaaaagtgtctgttcatatccttcacccacattttgatggttttttttttttttttttcttgtaaatttgtttaagtctcttgtagattcggtattgtagccctttgtcaaatggataggattacaaaaattttct-ccattctgtagtgctg-ctattcactc-gatcatagtttcttttgc-gtgcagaagctctcttagtttcatta-atcctatttgtcaattttgctttttgttgccattgctttttgatgacttaagtcatcgaagtctctgcccatcctaatgtcctgaatggtattgcctaggttttcttgta-ggtttttatgtttcttagaggtcttatgttttaagtcttaatccatcttgagttaatttttgtaataaggtgtaaggaaagggtccagtgttcagtttctgcatatagctagccagttttctcaacagcatttattaaatagggaattctctcccacttggcttgtttttaatcaagtttatcaaagatccagatagttgtagatgtgtggcattatttcttgagccctcttgttctgttcatattggtc-atataatctgttttggtaccagtgccatgctgttttggttactataggaattgtagtatagtttgaagtcagatagcattgattgcctccagc-ttgttc--tttgcttcggattgtcttgtgctatgtgggctctttctt-gttccatatgaaatttaaagtag-ttttttcctattctgtgaagaaagtcaatggtagcttgatggggatagcattgaatctataaattactttgggcagtatggcca-ttttcacaatattgattcttcctgcccatgaggatggaatgtttttccatttgtttgtgtcctctgtccttgagcagtggtttgtagttctccttgaagaagtccttcacatgccttgtaagttgtattcctgggtattttattctctttgcagcaattgtgaatgggagttcactcatgatttggctctctttattattattattattattattggtgtataggaatgcctgtggtttttgcatgttgattttgtatcctgagactttgctgaaattgcttataagcttaaggagatttggggctcagattatggggttttctaaatatagaatcatgtcacctgcaaacagagacaatttgacttcct-tctttatatttgaatacc-tttta--ttttttttgtctttcctgattgccctgtccagaacttccaacactatgttgaataggagtgttgagagacggcatccttgtcttgtgacagttttcacagggaatgattccagcttttgcccattcagtatgatattggctgtgg--------------------gtttgtcatagatagctcttattattttgagatacattccatcaatccctagtttattgagagtttttagcatgaagcggtgttgaattttattgaaaccctttcctgcatctattgagataatgatgtggtttttgtcattggttctgtttatgtgatggattgcatttattgatttgcatatgttgaatcaaccttgcatcccagggatgaagctgacttgatcatggtagataagctttttgatgcactgctggatttggtttgccagtatttcattgaggattttcacatcaatgttcattagggatattggcctgaaattttccttttttattgtgtttcggcaaggttttggtatcaggttgatgctgtcctcataaaatgagttatggaggatttcctctttttctgttgtttggaatagtttcagaaggaatggtaccagctcctttttatacttctggtagaattcggctgtgaatccatctggttctgggcttttctttgttggtaggctattaattactgccttaatttcagaacttgttattggtct-ttcagggattagatttcttcctggtttagtcttgggagggtttatgtgtccaggcatttatccattttttctagattttctagtttatttgcatagagatgtttatagtattccttgatggtagtttatatttctgtgggatcagcagtgatattccatttatcattttttatagtgtctatttgatttttc-----tctcttctttattagtctggctagtggtctactttgttaaattttttcaaaaaaactgagctgctgaattcattg-tttttttt--atttttat------tt-----tttgt----ttaacctgttgtttcctcctctgattttagttatttcttgccttctgctagcttttgaatgtgtttgctcttgcttctgtagttcttttaattgtaacattagggtgttgagtttagatctttcctgctttctcttgtgggcatttagtgctataaatttccctttaaacactgccttagcAGTactactgcagctagctcagtcactgcccaaacggcggcccagttttgtgcttgaaacccagggccccggtagcataggcacccgagggaatctcctgttcc-cggtttgtgaaatctgtgggaaaagcgtagtatct-accaggagtgcactgttcctcacagcccagtccctcatggcttcccttgactaggaaagggagttggtcccacccgttgggcttcct-gggtgaggcgatactccactccctgctttggctagccctccgtgggctgtacccactgtctaaccagtcctagtgagattagcccgggtgcctccattggaaatgcagaaatcatccaccttctgca------tgatctcagtgggagctgcggccggaagctgtttctattcagccatcttcccagccaccCACACTGACTTCT
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             228000 3665 +    766320 cccttaccccgcaacaggccctggtgtgtgatgttcctctacctgtgtccatgagttctcattgttcaactccc--acttatgagtgagaacatgcactgtttggttttctgttcttgtgttagtttgctgagaatgatagtttccagcttcatccatgtgcctgccaaggacatgaactcatc-cttttatgactg----------catagtattccatgggtgtatatgtgccacattttctttatccagtctatcattgatgggcatttgggttggtttcaagtctttgctattgtgaacagagccacaataaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttgggtatataccctgtaatgggattgctgggtcaaatggtatttctggttctagatccttgaggaatcgccacactgtcttccacaatggttgaattaatttacactcctgccaacagtgtaaaagtgtttttatttctccacatcatctctaacatctgttgtttcctgcctttttaatgacagccattctaactggcatgagatggtatctcattatggttttgatttgcatttctctgatgaccaatgatgatgagctttttttcatatgtttgttggccgcataaatgtcttcttttagaaagtgtctgtcgggccagggccatggctcatgcctgtaatcccagcactttggaggggcacggcgggcagatcacgaggtgaggagattgagaccatcctggctaacatggtgaaactccatctcaactaaaaatacaaaaaattagctgggcatggtgccatgcacctgtaatcccagctactcaggaggctgaggaaggagaatcacttgaacctgcagaatcccaaaagtgtctgttcatatccttcacccacattttgatgg-----ggttgttttttttcttgtaaatttgtttaagttctttgtagattctgggtattagccctttgtcagatggata-gattacaaaaattttctcccattctgtag-gctgcctattcactc-gatcatagtttcttttgctgtgcagaagctct-ttagtttcattagatcctatttgtcaattttggcttttgttgccattgc-ttttgatg-ctttagtcat-gaagtctctgcccatgcctatgtactgaatggtattgcctaggttttcttgtagggtttttatggtttt---aggtcttacatttaagtctttaatccatcttgagttaatttttgt-ataaggtgtaaggaaggagtccagtttcagttttctgcatatggctagccagttttctcaacagcatttattaaatagggaattctttccc-cattgcttgttttt-atcaagtttatcaaagat-cagatagttgtagatgtgtggcattatttctgaagcc--tctgttctgtt-atattggtctatat-atctgttttggtaccagtaccatgctgttttggttactgta-gcattgtagtatagtttgaagtcagatagcatga--tgcctccagctttgttctttttgcttaggattgtcttg-gctatgtgggctctttcttggttccatatgaaatttaaagtag-ttttttcctattctgtgaagaaagtcaatggtagcttgatggggatagcattgaatctataaattactttgggcagtatggccg-ttttcacaatattgattcttcctgcccatgaggatggaatgtttttccattcgtttgtgtcctctgtccttgagcagtggtttgtagttctccttgaagaagtccttcacatgccttgtaagttgtattcctgggtattttattctctttgcagcaattgtgaatgggagttcactcatgatttggctctct---tttttattattatttttattggtttataggaatgcctgtggcttttgcatgttgattttgtatcctgagactttgctgaaattgcttataaacttaaggagatttggggctgagatgatggggttttctaaatatagaatcatgtcatctgcaaacagagacaatttgacttcct-tctttatatttgaatacc-ttttt--ttttttttgtctttcctgattgccctgtccagaacttccaacactatgttgaataggagtgttgagagacagcatccttgtcttgtgacagttttcacagggaatgattccagcttttgcccattcagtatgatattggctgtgg--------------------gtttgtcatagatagctcttattattttgagatacattccatcaatccctagtttattgagagtttttagcatgaagcggtgttgaattttattgaaacccttttctgcatctattgagataatgatgtggtttttgtcattggttctgtttatgcgatggattacatttattgatttgcatatgttgaatcaaccttgcatcccagggatgaagctgacttgatcatggtagataagctttttgatgcactgctggatttggtttgccaatattttgctgaggattttcacatcaatgttcattagggatattggcctgaaattttccttttttattgtgtttctgcaaggttttggtatcaggttgatgctgtcctcataaaatgagttatggaggatttcctctttttctattgtttggaatagtttcagaaggaatggtaccagctcctttttgtacctctggtagaattcggctgtgaatccatctggttctgggcttttcttggttggtaggctattaattactgccttaatttcagaacttgttattggtca-ttcagggattagatttcttcctggtttagtcttgggagggtttatgtatccaggcatttatccattttttctagattttctagtttatttgcatagagatgtttatagtattccttgatggtagtttatgtttctgtgggatcagcagtgatattccatttatcattttttatagtgtctatttgatttttctctcttttcttctttattagtctggctagtggtctactttgttaaattttttcaaaaaaaccaagctgctgaattcatcg-gttttttt--attttt-t------at-----tttgt----ttatctccttcatttctgctctgatcttagttatttcttgtcttctgctagcttttgaatttgttttctcttgcttctgtagttcttttaattgtaacgttagggtgttgagtttagatctttcctgctttctcttgtgggcatttagtgctataaatttccctttaaacactgccttagcAGTactactgcagctagctcagtctctgcccaaagggccgcccagttttgtgcttgaaactcagggccccggtagcataggcacctgagggaatctcccgttcc-tggtttgtgaaatctgtgggaaaagcgtagtatct-agcaggagtgcattgttcctcacagcccagtccctcatggcttcccttgactaggaaagggagttggtccgacccgttgggcttcct-gggtgaggcgataccaca--ccctgctttggctagccctccgtgggctgcacccactgtctaaccagtcccagtgagattag-ccgggtacctcagttggaaatgcagaaatcatccaccttctgcat-----tgatctcagtgggagctgc-gcccgaagctgtttctattcggccatcttcccagccacccacactgatttct
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28740199 3662 -  71996105 cccttaccccccaagaggccctggtgtgtgatgttcctctacctgtgtccatgagttctcattgttcaactccc--acttatgagtgagaacatgcactgtttggttttctgttcttgtgttagtttgctgagaatgatagtttccagcttcatccatgtgcctgcaaaggacatgaactcatc-cttttatgactg----------catagtattccatgggtgtatatgtgccacattttctttatccagtctatcattgatgggcatttgggttggtttcaagtctttgctattgtgaacagagccacaataaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttgggtatataccctgtaatgggattgctgggtcaaatggtatttctggttctagatccttgaggaatcgccactctgtcttccacaatggttgaattaatttacactcctgccaacagtgtaaaagtgtttttatttctccacatcatctctaacatctgttgtttcctgcctttttaatgacagccattctaactggcatgagatggtatctcattatggttttgatttgcatttctctgatgaccagtgatgatgagctttttttcatatgtttgttggccgcatagatgtcttcttttagaaagtgtctgttgggccagggccgtggctcatgcctgtaatcccagcactttggaggggcgcggcgggcagatcacgaggtgaggagattgagaccatcctggctaacatggtgaaactccatctcaactaaaaatacaaaaaattagctgggcatggtgccatgcacctgtaatcccagctactcaggaggctgaggaaggagaatcacttgaacccggagaatcccaaaagtgtctgttcatatccttcacccacattttgatgg---ggttgttttttttttcttgtaaatttgtttaagttctttgtagattctgggtattagccctttgtcagatggata-gattacaaaaattttctcccattctgtag-gctgcctattcactc-gatcatagtttcttttgctgtgcagaagctct-ttagtttcattagatcctatttgtcaattttggcttttgttgccattgc-ttttgatg-ctttagtcat-gaagtctctgcccatgcctatgtcctgaatggtattgcctaggttttcttgtagggtttttatggtttt---aggtcttacgtttaagtctttaatccatcttgagttaatttttgt-ataaggtgtaaggaaggagtccagtttcagttttctgcatatggctagccagttttctcaacagcatttattaaatagggaattctttccc-cattgcttgttttt-atcaagtttatcaaagat-cagatagttgtagatgtgtggcattatttctgaagcc--tctgttctgtt-atattggtctatat-atctgttttggtaccagtaccatgctgttttggttactgta-gcattgtagtatagtttgaagtcagatagcatga--tgcctccagctttgttctttttgcttaggattgtcttg-gctatgtgggctctttcttggttccacatgaaatttaaagtag-ttttttcctattctgtgaagaaagtcaatggtagcttgatggggatagcactgaatctataaattactttgggcagtatggcca-ttttcacaatattgattcttcctgcccatgaggatggaatgtttttccatttgtttgtgtcctctgtccttgagcagtggtttgtagttctccttgaagaagtccttcacatgccttgtaagttgtattcctgggtattttattctctttgcagcaattgtgaatgggagttcactcatgagttggctctct---tttttattattattattattggtgtataggaatgcctgtggtttttgcatgttgattttgtatcctgagactttgctgaaattgcttataaggttaaggagatttggggctgagatgatggggttttctaaatatagaatcatatcacctgcaaacagagacaatttgacttcct-tctttaaatttgaatacc-ttttattttttttttgtctttcctgattgccctgtccagaacttccaacactatgttgaataggagtgttgagagacggcatccttgtcttgtgacagttttcacagggaatgattccagcttttgcccattcagtatgatattggctgtgg--------------------gtttgtcatagatagctcttattattttgagatacattccatcaatccctactttattgagagtttttagcatgaagcggtgttgaattttattgaaacccttttctgcatctattgagataatgatgtggtttttgtcattggttctgtttatgtgatggattacatttattgatttgcatatgttgaatcaaccttgcatcccagggttgaagctgacttgatcatggtagataagctttttgatgcgctgctggatttggtttgccagtatttcattgaggattttcacatcaatgttcattagggatattggcctgaaattttccttttttattgtgtttctgcaaggttttggtatcaggttgatgctgtcctcataaaatgagttatggaggatttcctctttttctattgtttggaatagtttcagaaggaatggtaccagctcctttttgtacttctggtagaattcggctgtgaatccatctggttctgggcttttcttggttggtaggctattaattactgccttaatttcagaacttgttattggtct-ttcagggattagatttcttcctggtttagtcttgggagggtttatgtgtccaggcatttatccattttttctagattttctagtttatttacatagagatgtttatagtattccttgatggtagtttatatttctgtgggatcagcagtgatattccatttatcattttttatagtgtctatttgatttttctctcttctcttctttattagtctggctagtggtctactttgttaaattttttcaaaaaaaccgagctgctgaattcattg-gttttttg--attttt-------------------t----ttatctccttcatttctgctctgatcttagttatttcttgtcttctgctagcttttgaatttgttttctcttgcttctgtagttcttttaattgtaatgttagggtgttgagtttagatctttcctgctttctcttgtgggcatttagtgctataaatttccctttaaacactgccttagcagtactactgcagctagctcagtctctgcccaaacggccgcccagttttgtgcttgaaacccagggCCCtggtagcataggcacccgagggaatctcctgttcc-tggtttgtgaaatctgtgggaaaagtgcagtatct-agcaggagtgcactgttcctcacagcccagtccctcatggcttcccttgactaggaaagggagttggtccgacccgttgggcttcct-gggtgaggcgatacccca--ccctgctttggctagccctccgtgggctgcacccactgtctaaccagtcccagtgagattag-ctgggtacctcagttggaaatgcagaaatcatccaccttctgcat-----tgatctcagtgggagctgc-acccgaagctgtttctattcggccatcttcccagccacccacactgatttct
i chlSab2.chr17                   C 0 C 0
s colAng1.NW_012115566v1            2369686 3686 -   3067355 cccttaccccccaacaggccctggtgtgtgatgttcccctacctgtgtccatgagttctcatggttcaactcccatacttatgagtgagaatatgcactgtttggttttctgttcttgtgttagtttgccgagaatgatagtttccagcttcatccatgtccctgcaaaggacatgaactcatc-tttttatgaccg----------catagtattccatgggtgtatatgtgccacattttctttatccattctatcattgatgggcatttgggttggttccaagtctttgctattgtgaacagagccacaataaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttctagatccttgaggaatcgccactctgtcttccacaatggttgaactaatttacactcctgccaaccatgtaaaagtgtttatatttctccacatcctctctaacatctgttgtttcctacctttttaatgacagccattctaactggcgtgagatggtatctcattatggttttgatttgcatttctctgatgaccagtgatgatgagctttttttcatatgtttgttggccgcataaatgtcttcttttaaaaagtgtctgttgggccggggctgtggctcatgcctgtaatcccagcactttggaggggtgcagtgggcagatcacgaggtcaggagattgagactatcctggctaacatggtgaaactccatctcaattaaaaatacaaaaaattagctgggcatggtgccatgcacctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccagaggatcccaagagtgtctgttcatatccttcacctacattttgatgg----gattgtttttttctcttgtaaatgtgtttaagttctttgtagattctggatattagccctttgtcagatagata-gattacaaaagttttctcccattctgtag-gctgcctattcactc-gatcatagtttcttttgctgtgcagaagctct-tcagtttcattagatcccatttgtcaattttggcttttgttaccattgc-ttttgatg-ctttagtcat-gaagtctctgcccatgcctatgtcctgaatggtattgcctaggttttcttgtagggtttttatggtttt---aggtcttatgtttaagtctttaatccatcttgagttaatttttgt-ataaggtgtaaggaaggagtccagtttcagttttctgcatatggctagccagttttctcaacagcatttattaaatagggaattctttccc-aattgcttgttttt-atcaagtttatcaaagat-cagatagttgtagatgtgtggcattatttctgaggcc--tctgttctgtt-atattggtctatat-atctgttttggtaccagtaccatgctgttttggttactgta-gcattgtagtatagtttgaagtcaggtagcatga--tgcctccagctttgttctttttgcttaggattatcttg-gctacgtgggctctttcttggtttcatatgaaatttaaagtag-ttttttcctattctgtgaagaaagtcaatggtagcttgacggggatagcattgaatctataaattactttgggcagtatggcca-ttttcacaatattgattcttcctgcccatgaggatggaatgtttttccatttgtttgtgtcctctgtccttgagcagtggtttgtaattctccttgaagaagtccttcacatgccttgtaagttgtattcctgggtattttattctctttgcagcaattgtgaatggcagttcactcacgatttggctctctgt-tttttattattattattattggtgtataggaatgcctgtggtttttgcatgttgattttgtatcctgagactttgctgaaattgcttataagcttaaggagatttggggctgagatgatggggttttctaaatatagaatcatgtaatctgcaaacagagacaattttacttcctctctttatatttgaataccattttt--ttttttttgtcttgcctaattgccctggccagaacttccaacactatgttgaataggagtgttgagagacggcatccttgtcttgtgacagttttcacagggaatgattccagcttttgcccattcagtatgatattggctgtgg--------------------gtttgtcatagacagctcttattattttgagatacattccatcaatccctagtttattgagagtttttagcatgaaggagtgttgaattttatcgaaacccttttctgcatctattgagataatgatgtggtttttgtcattggttctgtttatgtgatggattacatttattgatttgcatatattgaatcaatcttgcatcctagggatgaagctgacttgatcatggtagataagctttttgatgcactgctggatttggtttgccagtattttattgaggattttcacatcaatgttcattagggatattggcctgaaattttccttttttattgtgtctctgcaaggttttggtgtcaggttgatgctgtcctcataaaatgagttatggaggatttcctctttttctattgtttggaatagtttcagaaggaatgatatcagctcctttttgtacttctggtagaattcggctgtgaat-cgcctggttctgggcttttcttggttggtaggccattaattactgcctcaatttcagaacttgttattggtca-ttcagggattagatttcttcctggtttagtcttgggagggtttatgtgtccaggcacttatccattttttctagattttctagtttatttgcatagagatgtttatagtattccttgatggtagtttatatttctgtgggatcagcagtgatattccatttatcattttttatagtgtctatttgatttttctctcttttcttctttattattctggctagtggtctactttgttaaattttttcaaaaaaacccagctgctgaattcattg-atttttttaaatttttgt------ttgtttgtttct----ctatctccttcatttctgctctgatcttagttatttcttgtcttctgctagcttttgaatttgttttctcttgcttctgtagttcttttaattgtaatgttagggtgttgagtttagatctttcctgctttctcttgtgggcatttagtgctataaatttccctttaaacactgccttagcGGTactactgcagctagctcagtctctgcccaaatggccgcccagttttgtgcttgaaacccagggccccggtagcataggcacccgagggaatctcctgttcc-tggtttgtgaaatctgtgggaaaagcgtagtatctgggcaggagtgcactgttcctcacagcccagtccctcatggcttcccttgactaggaaagggagttggtccgacccattgggattcct-gggtgaggcgatacccca--ccctgctttggctagccctccgtgggctgcatccactgtctaaccagtcccagtgagattag-ccaagtacctcagttagaaatgcagaaatcatccaccttctgtatctcactgatctcaatgacagctgcggcccgaagctgtttctattcggccatcttcccagccaccCACACTGAtttct
i colAng1.NW_012115566v1          C 0 I 320
e canFam3.chr35                    26144709 15139 +  26524999 I
e otoGar3.GL873742                  1968719 1928 -   2232465 I
e cebCap1.NW_016107522v1             213259 2999 +   3820305 I
e calJac3.chr6                    126588141 10469 - 158406734 I
e manLeu1.NW_012099655v1             212501 5174 -    352859 I

a score=12285.000000
s hg38.chr6_GL000254v2_alt           578527 3 +   4827813 AAA
s panTro5.chr6                     29550883 3 + 175400573 AAA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29789137 3 + 173848474 AAA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5591926 3 +   6154872 AAA
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     23687 3 +     39990 AAA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29818301 3 + 172585720 aaa
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                     29480626 3 - 170955103 aaa
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2467215 3 -   2996164 AAA
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             231665 3 +    766320 aaa
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                    28743861 3 -  71996105 aaa
i chlSab2.chr17                   C 0 C 0
e canFam3.chr35                    26144709 15139 +  26524999 I
e otoGar3.GL873742                  1968719 1928 -   2232465 I
e cebCap1.NW_016107522v1             213259 2999 +   3820305 I
e calJac3.chr6                    126588141 10469 - 158406734 I
e colAng1.NW_012115566v1            2373372 320 -   3067355 I
e manLeu1.NW_012099655v1             212501 5174 -    352859 I

a score=140625.000000
s hg38.chr6_GL000254v2_alt           578530 30 +   4827813 GTAGTTGTTCCATATTATATTCCCTAGATA
s panTro5.chr6                     29550886 30 + 175400573 GTAGTTGTTCCATATTATATTCCCTAGATA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29789140 30 + 173848474 GTAGTTGTTCCATATTATATTCCCTAGATA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5591929 30 +   6154872 GTAGTTGTTCCATATTGTATTCCCTAGATA
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     23690 30 +     39990 GTAGTTGTTCGATATTATATTCCCTAGATA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                     29818304 30 + 172585720 gtagttgttccatattatattccctagata
i rheMac8.chr4                    C 0 I 1145
s macFas5.chr4                     29480629 30 - 170955103 gtagttgttccatattatattccctagata
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2467218 28 -   2996164 GTAGTT-TTCCATATTATA-TCCCTAGATA
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1             231668 30 +    766320 gtagttgttccatattatattccctagata
i cerAty1.NW_012002711v1          C 0 I 1122
s chlSab2.chr17                    28743864 30 -  71996105 gtagttgttccatattatattccctagata
i chlSab2.chr17                   C 0 I 1137
s colAng1.NW_012115566v1            2373692 30 -   3067355 GTAGTTGTTCCATATTATATTCCCTAGATA
i colAng1.NW_012115566v1          I 320 I 981
e canFam3.chr35                    26144709 15139 +  26524999 I
e otoGar3.GL873742                  1968719 1928 -   2232465 I
e cebCap1.NW_016107522v1             213259 2999 +   3820305 I
e calJac3.chr6                    126588141 10469 - 158406734 I
e manLeu1.NW_012099655v1             212501 5174 -    352859 I

a score=1179.000000
s hg38.chr6_GL000254v2_alt           578560 1 +   4827813 A
s panTro5.chr6                     29550916 1 + 175400573 A
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29789170 1 + 173848474 A
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5591959 1 +   6154872 A
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     23720 1 +     39990 A
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s macFas5.chr4                     29480659 1 - 170955103 g
i macFas5.chr4                    C 0 C 0
s macNem1.NW_012011356v1            2467246 1 -   2996164 A
i macNem1.NW_012011356v1          C 0 I 1126
e canFam3.chr35                    26144709 15139 +  26524999 I
e otoGar3.GL873742                  1968719 1928 -   2232465 I
e cebCap1.NW_016107522v1             213259 2999 +   3820305 I
e calJac3.chr6                    126588141 10469 - 158406734 I
e colAng1.NW_012115566v1            2373722 981 -   3067355 I
e manLeu1.NW_012099655v1             212501 5174 -    352859 I
e chlSab2.chr17                    28743894 1137 -  71996105 I
e cerAty1.NW_012002711v1             231698 1122 +    766320 I
e rheMac8.chr4                     29818334 1145 + 172585720 I

a score=5700.000000
s hg38.chr6_GL000254v2_alt           578561 6 +   4827813 TCAAGA
s panTro5.chr6                     29550917 6 + 175400573 TCAAGA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29789171 6 + 173848474 TCAAGA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5591960 6 +   6154872 TGAAGA
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     23721 6 +     39990 TCAAGA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s macFas5.chr4                     29480660 6 - 170955103 tccagg
i macFas5.chr4                    C 0 I 65
e canFam3.chr35                    26144709 15139 +  26524999 I
e otoGar3.GL873742                  1968719 1928 -   2232465 I
e cebCap1.NW_016107522v1             213259 2999 +   3820305 I
e calJac3.chr6                    126588141 10469 - 158406734 I
e colAng1.NW_012115566v1            2373722 981 -   3067355 I
e manLeu1.NW_012099655v1             212501 5174 -    352859 I
e chlSab2.chr17                    28743894 1137 -  71996105 I
e cerAty1.NW_012002711v1             231698 1122 +    766320 I
e macNem1.NW_012011356v1            2467247 1126 -   2996164 I
e rheMac8.chr4                     29818334 1145 + 172585720 I

a score=98439.000000
s hg38.chr6_GL000254v2_alt           578567 108 +   4827813 ATTGTTATAAAGggctgggcgtggtagctcacgcctgtaatcccagcactttgggaggccgaggtggacggatgacgaggtcaggagatcaagaccatcttggctaCC
s panTro5.chr6                     29550923 108 + 175400573 ATTGTTATAAAGggctgggcgtggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggtggatgacgaggtcaggagatcaagaccatcttggctaCC
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29789177 108 + 173848474 ATTGTTATAAAGggctgggcgtggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggtggatgacgaggtcaggagatcaagaccatcttggctaCC
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5591966 108 +   6154872 ATTGTTATAAAGggctgggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcggatgacgaggtcaggagatcaagaccatcctggctaCC
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     23727 108 +     39990 ATTGTTATAAAGgactgggcgtggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggcggatgacaaggtcaggagatcgagaccatcctggctaCC
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
e canFam3.chr35                    26144709 15139 +  26524999 I
e otoGar3.GL873742                  1968719 1928 -   2232465 I
e cebCap1.NW_016107522v1             213259 2999 +   3820305 I
e calJac3.chr6                    126588141 10469 - 158406734 I
e colAng1.NW_012115566v1            2373722 981 -   3067355 I
e manLeu1.NW_012099655v1             212501 5174 -    352859 I
e chlSab2.chr17                    28743894 1137 -  71996105 I
e cerAty1.NW_012002711v1             231698 1122 +    766320 I
e macNem1.NW_012011356v1            2467247 1126 -   2996164 I
e macFas5.chr4                     29480666  65 - 170955103 I
e rheMac8.chr4                     29818334 1145 + 172585720 I

a score=1066486.000000
s hg38.chr6_GL000254v2_alt           578675 829 +   4827813 ttgtcaggtgttttgaaaaacttttagctttttaaacacattcatggtgatatatatcgatgagtttattttgtattgccctgttcaacaaggttgaacatcttttcatggacttattagttatttgtgtgtcttcatttgtgaagtttttgctcagacacttggcccatttttaaaacaagttgttaatctttctattatgaagacatttacatatgtgtgtatatatgtatatatactggataaaaatcttttgtcagatacacgtattacagatgttttttctaatctcctgtgattgtc------ttttttttccatcaggttcttttggagagtaaaactttaaaaattttgatgtagttcaatctatcaactttgtgttttataattcatgtttggtgtcctatcttccaaaaataccttctttaaaattacaaag-ttttttttcttttgagacagggtctcactctgtcacccaggctggagtgcagtggtgcaatcttggctcactgcaacctccgcctcctggttcaagcaattctcgtgcctcagactctcaagtagctgagattacaagtgtgtgctgctatgctggctcattttcttt-------ctttctgtcttttttgtttgt--ttgtt--------tgtatttttaatagagatgggatttcagtatgttggccaggctggttttgaactcctcacctcaaatgatccacctgccttggcctcctaatatgctgggattacaggcatgagccaccgcgcccggcctaaaattataaaggtatttttctatgtgaccatttagaaaatgaatagttttagcttctata-tt--aattaa
s panTro5.chr6                     29551031 827 + 175400573 ttgtcaggtgttttgaaaaacttttagctttttaaacacattcatggtgatatatatcgatgagtttattttgtattgccctgttcaacaaggttgaacatcttttcatggacttattagttatttgtgtgtcttcatttgtgaagtgtttgctcagacacttggcccatttttaaaacaagttgttaatctttctattatgaagacatttacatatgtgtgtatatatgtatatatactgggtaaaaatcttttgtcagatacacgtattacaaatgttttttctaatctcctgtggttgtc------ttttttttccatcaggttcttttggagagtaaaactttaaaaattttgatgtagttcaatctatcaactttgtgttttataattcatgtttggtgtcctatcttccaaaaataccttctttaaaattacaaag-ttttttttcttttgagacagggtctcactctgtcacccaggctggagtgcagtggtgcaatcttggctcactgcaacctccacctcctggttcaagcaattctcgtgcctcagcctctcaagtagctgagattacaagtgtgtgctgctatgctggctcattttcttt-------ctttctgtctttttttttttt--tt-----------tgtatttttaatagagatgggatttcactatgttggccaggctggttttgaactcctcacctcaaatgatccacctgccttggcctcctaatatgctgggattacaggcatgagccaccgcgcccggcctaaaattataaagatatttttctatgtgaccatttagaaaatgaatagttttagcttctatactt--cattaa
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                     29789285 824 + 173848474 ttgtcaggtgttttgaaaaacttttagctttttaaacacattcatggtgatatatatcgatgagtttattttgtattgccctgttcaacaaggttgaacatcttttcatggacttattagttatttgtgtgtcttcatttgtgaagtgtttgctcagacacttggcccatttttaaaacaagttgttaatctttctattatgaagacatttacatatgtgtgtatatatgtatatatactgggtaaaaatcttttgtcagatacacgtattacaaatgttttttctaatctcctgtggttgtc------ttttttttccatcaggttcttttggagagtaaaactttaaaaattttgatgtagttcaatctatcaactttgtgttttataattcatgtttggtgtcctatcttccaaaaataccttctttaaaattacaaag--tttttttcttttgagacagggtctcactctgtcacccaggctggagtgcagtggtgcaatcttggctcactgcaacctccacctcctggttcaagcaattctcgtgcctcagcctctcaagtagctgagattacaagtgtgtgctgctatgctggctcattttcttt-------ctttctgttcttttttttttt---------------tgtatttttaatagagatgggatttcactatgttggccaggctggttttgaactcctcacctcaaatgatccacctgccttggcctcctaatatgctgggattacaggcatgagccaccgcgcccggcctaaaattataaagatatttttctatgtgaccatttagaaaatgaatagttttagcttctatactt--cattaa
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1            5592074 833 +   6154872 ttgtcaggtgttttgaaaaacttttagctttttaaacacattcatggtgacatatatcaatgagtttattttgtattgccctgttcaacaaggttgaacatcttttcatggacttattagttatttgtgtgtcttcatttgtgaagtgtttgctcagacacttggcccatttttaaaacgagttgttaatctttctattatgaagacatttacatatgtgtgtatatatgtatatatactggataaaaatcttttgtcagatacacatattacaaatg-tttttctaatctcctgtgattgtc------ttttttttccatcaggttcttttggagagtaaaactttaaaaattttgatatagttcaatctatcaactttgtgttttataattcatgtttggtgtcctatcttccaaaaataccttctttaaaattacgaag-ttttttttcttttgagacagggtctcattctgtcagccgggctggagtgcagtggtgcagtcttggctcactgcaacctccgcctcctggttcaagcaattctcgtgcctcagcctctcaagtagctgagattacaagtgtgtgccactacgcttgctcattttcttt-------ctttctgtcttttttgttttttgttttt--------tgtatttttaatagagatgggatttcactatgttggccaggctggttttgaactcctcacctcaaatgatccacctgccttggcctcctaatatgctaggattacaggcatgagccaccgcacccggcctaaaattataaagttatttttctatgtgaccatttagaaaatgaatagttttagcttctatacttaaaattaa
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random     23835 840 +     39990 ttgtcaggtgttttgaaaaacttttagctttttaaacacattcatggtgatatatatcgatgagtttattttgtattgccctgttcaacaaggttgaacatcttttcatggacttattagttatttgtgtgtcttcatttgtgaagtgtttgctcaaacacttggcccatttttaaaacaagttgttaatctttctattatgaagacatttacatatgtgtgtatatatgtatatatactggataaaaatcttttgtcacatacatgtattacaaatgttttttctaacctcctgtgattgtc-----tttttttttccatcaggttcttttggagagtaaaactttaaaatttttgatgtagttcaatccatcaactttgtgttttataattcatgtttggtgtcctatcttccaaaaataccttctttaaaattacaaagtttttttttctttcgagacagggtctcaatctgtcacccaggctggagtgcagtggtgcaatcttggctcactgcaacctccgcctcctggttcaagcaattctcgtgcctcagcctctcaagtagctgagattacaagtgtgtgccactatgctggctcattttcttt-------ctttctgtcttttttttcttt--ttttttttttttctgtatttttaatagagatgggatttcactatgttggccagcctggttttgaactcctcacctcaaatgatccacctgccttggcctcctaatatgctgggattacaggtgtgggccaccgcacctggcctaaaattatgaagatatttttctatgtgaccgtttagaaaatgaatagttttagcttctatactt--aATTaa
i nomLeu3.chr1a_JH996256_1_random C 0 N 0
s macFas5.chr4                     29480731 848 - 170955103 ttgtcaggtgtttt-aaaaacttttagctttttaaacacattcatggtgatatatatcgaagagtttattttgcattgccctgttcaacaaggttgaacatcttttcatggacttattagttatttgtgtg--ttcatttgtgaagtgtttgctcaaacacttggcccatttttaaaacgagttgttaatctttctattaagaagacatttacatatgtgtgtatatatgcatatatactggataaaaatcttttgtcagatacatgtattacaaatgttttttctaatctcctagggttgtctttttttttttttttcatcaggttcttttggagagtaaaactttaaacattttgatgtagttcaatctatcaactttttgtttcataattcatgtttggtgtcctatcttccaaaaataccttctttaaaattataaagattttttttcttttgagacggggcctcactctgtcacccaggctggagtgcagtggtgcaatcttgactcactgcaacctccacctcctggttcaagcaattctcgtgcctcagcctctcaagtagctgatattacaggtgtgtgccactatgctggctcattttcttttcttttcttttctttctttttctttttt--tttttttttttt-tgtatttttaatacagatgggatttcactgtgttggtcaggctggttttgaactcctcaccacaaatgatccacccgccttggcctcctaatttgctgggatcaaaggtgtgagccaccatgcccggcctaaaattataaagatatttttctaagtgaccatttagaaaatgaatagttttagcttctatactt--aattca
i macFas5.chr4                    I 65 C 0
e canFam3.chr35                    26144709 15139 +  26524999 I
e otoGar3.GL873742                  1968719 1928 -   2232465 I
e cebCap1.NW_016107522v1             213259 2999 +   3820305 I
e calJac3.chr6                    126588141 10469 - 158406734 I
e colAng1.NW_012115566v1            2373722 981 -   3067355 I
e manLeu1.NW_012099655v1             212501 5174 -    352859 I
e chlSab2.chr17                    28743894 1137 -  71996105 I
e cerAty1.NW_012002711v1             231698 1122 +    766320 I
e macNem1.NW_012011356v1            2467247 1126 -   2996164 I
e rheMac8.chr4                     29818334 1145 + 172585720 I

a score=198013.000000
s hg38.chr6_GL000254v2_alt    579504 225 +   4827813 gtctgtgatccttattgagttaatttttgagtgtagtataaagtgagtgttaatgatcattctttttctatacagatatatagtttttagtgtgatttattgaaaagacattattttcccccattgatttgccttagcaccttgtcaatatatgggcttactattctttttcattgatctatgtgtttatttttaactaataccataccatactgatttcagcaa
s panTro5.chr6              29551858 225 + 175400573 gtctgtgatccttattgagttaatttttgagtgtagtataaagtgagtgttagtgctcattctttttctatacagatatatagtttttagtgtgatttattgaaaagacattattttcccccattgatttgccttagcaccttgtcaatatatgggcttactattctttttcattgatctatgtgtttatttttaactaataccataccatactgatttcagcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29790109 225 + 173848474 gtctgtgatccttattgagttaatttttgagtgtagtataaagtgagtgttagtgctcattctttttctatacagatatatagtttttagtgtgatttattgaaaagacattattttcccccattgatttgccttagcaccttgtcaatatatgggcttactattctttttcattgatctatgtgtttatttttaactaataccataccatactgatttcagcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5592907 225 +   6154872 gtctgcgatccttattgagttaatttttgagtgtagtataaagtgagtgttaatgctcattctttttctatacagatatatagtttttagtgtgatttattgaaaagacattattttcccccattgatttgcctcagcaccttgtcaatatatgggcttactattctttttcattgatctatgtgtttatttttagctaataccacaccatactaatttcagcaa
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29481579 225 - 170955103 gtccgtgatccctattgagttaatttttgaatgtaatataaagtgagtattaatgctcattctttttctatacagatatatagcttttagtgtgatttattgaaaagacattatgttcccccattgatttacctcagaaccttgtcaatatatgggcttactattctttttcattgatctatgtgtttatttttaactaataccatactgtatcaattacagcaa
i macFas5.chr4             C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I
e cebCap1.NW_016107522v1      213259 2999 +   3820305 I
e calJac3.chr6             126588141 10469 - 158406734 I
e colAng1.NW_012115566v1     2373722 981 -   3067355 I
e manLeu1.NW_012099655v1      212501 5174 -    352859 I
e chlSab2.chr17             28743894 1137 -  71996105 I
e cerAty1.NW_012002711v1      231698 1122 +    766320 I
e macNem1.NW_012011356v1     2467247 1126 -   2996164 I
e rheMac8.chr4              29818334 1145 + 172585720 I

a score=163840.000000
s hg38.chr6_GL000254v2_alt    579729 302 +   4827813 ctttataacgattttttttt-------gagacggagtcttgctctgtcgcccaggctggagtgcagtggcaccatctcggctcactgcaagctccgcctcctgggttcacgccattctcctgcctcagcctcctaagtagctgggactataggcgcccaccaccatgcctggctaatttttttgtatttttagtagagacggggtttcaccgtggtagccaggatggtctcgatctcctgacctcgtgatccgcccacctcggcctcccaaagtgctgggattacaggcatgagcca-ccacgccgtgcc
s panTro5.chr6              29552083 309 + 175400573 ctttataacgattttttttttttttttgagacagagtcttgctctgtcgcccaggctggagtgcagtggcaccatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcctaagtagctgggactataggcgcccaccaccatgcctggctaatttttttgtatttttagtagagacggggtttcaccgtggtagccaggatggtctcgatctcctgacctcgtgatccgcccacctcggcctcccaaagtggtgggattacaggcgtgagcca-ccacgccgtgcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29790334 305 + 173848474 ctttataacgattttttttt----tttgagacagagtcttgctctgtcgcccaggctggagtgcagtggcaccatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcctaagtagctgggactataggcgcccaccaccatgcctggctaatttttttgtatttttagtagagacggggtttcaccgtggtagccaggatggtctcgatctcctgacctcgtgatccgcccaccttggcctcccaaagtggtgggattacaggcgtgagcca-ccacgccgtgcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5593132 306 +   6154872 ctttatgacgattttttttt----tttgagacagagtctcgctctgtctcccgggctggagtgcagtggcaccatctcggctcactgcaagctccacctcccgggttcacgccattctcctgcctcagcctcctaagtagctgggactacaggcgcccaccaccatgcctggctaattttttcgtatttttagtagagacggagtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccacctcggcctcccaaaatgctgggattacaggcgtgagccacccacgccatgcc
i gorGor5.CYUI01015250v1   C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I
e cebCap1.NW_016107522v1      213259 2999 +   3820305 I
e calJac3.chr6             126588141 10469 - 158406734 I
e colAng1.NW_012115566v1     2373722 981 -   3067355 I
e manLeu1.NW_012099655v1      212501 5174 -    352859 I
e chlSab2.chr17             28743894 1137 -  71996105 I
e cerAty1.NW_012002711v1      231698 1122 +    766320 I
e macNem1.NW_012011356v1     2467247 1126 -   2996164 I
e macFas5.chr4              29481804   0 - 170955103 C
e rheMac8.chr4              29818334 1145 + 172585720 I

a score=2089594.000000
s hg38.chr6_GL000254v2_alt    580031 385 +   4827813 ctttataacaattcttgaagtcaggtagtttaatgcctctaatcttttgattttctaggctttgattttccaagtcttctgcatttccatatacactttagaattagcttgttaattcgtactaaaaagaagcatgctggcatttttattaggattgcatcaaatctatagatcatttctgagaaaatagaagtcttaatattgagtcatttaattcataaacacaacatagcttcccattttttaggtctttaatttctttcagtaacgttacatggctttcagtgaggcagtcttgttcctttattaaatttattactaattattCACATTTTAAGTTTTGAATACAAAAATTACACTTCATGCTCCTTAAATTGTTTCAAAT
s panTro5.chr6              29552392 385 + 175400573 ctttataacaattcttgaagtcaggtagtttaatgcctctaatcttttgattttctaggctttgattttccaagtcttttgcatttccatatacactttagaattagcttgttaattcgtactaaaaagaatcatgctggcatttttattaggattgcatcaaatctatagatcatttctgagaaaatagaagtcttaatattgagtcatttaattcataaacacaacatagcttcccattttttaggtctttaatttctttcagtaacgttacatggctttcagtgaggcagtcttgttcctttattaaatttattactaattattCACATTTTAAGTTTTGAATACAAAAATTACACATCATGCTCCTTAAATTGTTTCAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29790639 385 + 173848474 ctttataacaattcttgaagtcaggtagtttaatgcctctaatcttttgattttctaggctttgattttccaagtcttttgcatttccatatacactttagaattagcttgttaattcgtactaaaaagaagcatgctggcatttttattaggattgcatcaaatctatagatcatttctgagaaaatagaagtcttaatattgagtcatttaattcataaacacaacatagcttcccattttttaggtctttaatttctttcagtaacgttacatggctttcagtgaggcagtcttgttcctttattaaatttattactaattattCACATTTTAAGTTTTGAATACAAAAATTACACATCATGCTCCTTAAATTGTTTCAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5593438 385 +   6154872 ctttataacaattcttgaagtcaggtagtttaatgcctctaatcttttgattttctaggctttgattttccaagtcttttgcatttccatatacactttagaattagcttgttaattcgtactaaaaagaagcatgctggcatttttattaggattgcatcaaatctatagatcatttctgagaaaatagaagtcttaatattgagtcatttaattcataaacacaacatagcttcccattttttaggtctttaatttctttcagtaacgttacatggctttcagtgaggcagtcttgttcctttattaaatttattactaattattCACATTTTAAGTTTTGAATACAAAAATTACACATCATGCTCCTTAAATTGTTTCAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29819479 383 + 172585720 ctttataacaattcttgaagtcagataggttaaggcctctaatcttttgattttctaggcttcgattttccaagtcatttgcatttccatatacactttagaattagcttgttaattcctactaaaaagaagcatgctggcatttttattaggattgcatcaaatctatagatcatttctgagaaaatagaaatcttaatattgagtcatttaattcataaacatgacatagcttcccattttttaggtctttaatttctttcagtcatgttacatagcttt--atgaggcagtcttgctcctttattgaatttattactaattattCACATTTTATGTTTTGAATACTAAAATTACACATCATGCTCCTCAAATTATTTTAAAT
i rheMac8.chr4             I 1145 C 0
s macFas5.chr4              29481804 383 - 170955103 ctttataacaattcttgaagtcagataggttaaggcctctaatcttttgattttctaggcttcgattttccaagtcatttgcatttccatatacactttagaattagcttgttaattcctactaaaaagaagcatgctggcatttttattaggattgcatcaaatctatagatcatttctgagaaaatagaaatcttaatattgagtcatttaattcataaacatgacatagcttcccattttttaggtctttaatttctttcagtcatgttacatagcttt--atgaggcagtcttgctcctttattgaatttattactaattattCACATTTTATGTTTTGAATACTAAAATTACACATCATGCTCCTCAAATTATTTTAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2468373 383 -   2996164 ctttataacaattcttgaagtcagataggttaaggcctctaatcttttgattttctaggcttcgattttccaagtcatttgcatttccatatacactttagaattagcttgttaattcctactaaaaagaagcatgctggcatttttattaggattgcatcaaatctatagatcatttctgagaaaatagaaatcttaatattgagtcatttaattcataaacatgacatagcttcccattttttaggtctttaatttctttcagtcatgttacatagcttt--atgaggcagtcttgctcctttattgaatttattactaattattCACATTTTATGTTTTGAATACTAAAATTACACATCATGCTCCTCAAATTATTTTAAAT
i macNem1.NW_012011356v1   I 1126 C 0
s cerAty1.NW_012002711v1      232820 383 +    766320 ctttataacaattcttgaagtcagatagtttaaggcctctaatcttttgcttttctaggctttgattttccaagtcatttgcatttccatatacactttagaattagcttgttaattcctactaaaaagaagcatgctggcatttttattaggattgcatcaaatctatagatcatttctgagaaaatagaaatcttaatattgagtcatttaattcataaacatgacatagcttcccattttttaggtctttaatttctttcagtcatgttacatagcttt--atgaggcagtcttgctcctttattgaatttattactaattattCACATTTTATGTTTTGAATACTAAAATTACACATCATGCTCCTCAAATTATTTTAAAT
i cerAty1.NW_012002711v1   I 1122 I 319
s chlSab2.chr17             28745031 383 -  71996105 ctttataacaattcttgaagtcagatagtttaaggcctctaatcttttgattttctaggctttgattttccaagtcatttgcatttccatatacactttagaattagcttgttaattcctactaaaaagaagcatgctggcatttttattaggattgcatcaaatctatagatcttttctgagaaaatagaaatcttaatattgagtcatttaattcataaacacgacatagcttcccattttttaggtctttaatttctttcagtcatgttacatagcttt--atgaggcagtcttgctcctttattgaatttattactaattattcacattttatgttttgaatactaaaattacacatcatgctcctcaaattattttaaat
i chlSab2.chr17            I 1137 C 0
s colAng1.NW_012115566v1     2374703 383 -   3067355 ctttataacaattcttgaagtcagatagtttaaggcctctaatcttttgattttctaggctttgattttccaagtcatttgcatttccatatacactttagaattagcttgttaattcctactaaaaagaagcatcctggcatttttattaggattgcatcaaatctatagatcatctctgagaaaatagaaatcttaatattgagtcatttaattcataaacatgacatagcttcccattttttaggtctttaatttctttcagtaatgttacatagcttt--atgaggcagtcttgttcctttattgaatttattactaattattcacattttatgttttgaatgctaAAATTACACATCATGCTCCTTAAATTATTTCAAAT
i colAng1.NW_012115566v1   I 981 C 0
s calJac3.chr6             126598610 377 - 158406734 ctttataacaatttttgaagccaggtggtttaaggcctctaatcttttgattttctaggctttaatattctgagtcatttgcatttccat-tacgctttagaattagcctgttaattcctactaaaaggaagcatgctggcctttttattaggattgcatcaaatctatagatcatt--tgagagaacagaaatcttaatattgagtcatttaacttataaacatgacatagctccccatttttaaggtcctcaatttctttcagtaatgttacacagtttttagtgagactgtcttgttactttatta-----ATTGCTAATTATTCACATCTTACTTTTTGAATACAAAAATAACACGTCATGCTCCTTAAATTATTTCAAAT
i calJac3.chr6             I 10469 C 0
s cebCap1.NW_016107522v1      216258 367 +   3820305 ctttataacaatttttgaagtcaggtagtttaaggcctctcatcttttgattttctaggctttaatattccaagtcacttgcatttacat-tatgctttagaattagcatgttaattcctactaaaaggaagcatgctggcatttttattaggattgcatcaaatctat------------agagaacagaaatcttaatatcgagtcatttaacttataaacatgacatagctccccatttttaaggtccttaatttctttcagtaatgttacatagctttcagtgaggcagtcttgttactttatta-----atttctaattattCACATTTTATGTTTTGAGTACAAAAATTACACATCAGACTCCTTAAATTATTTCAAAT
i cebCap1.NW_016107522v1   I 2999 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I
e manLeu1.NW_012099655v1      212501 5174 -    352859 I

a score=4266314.000000
s hg38.chr6_GL000254v2_alt    580416 654 +   4827813 GTTGTAGAAATAACATTAAAATAAGAATTTCCTCTTTAATAGTGATTCCTAGAGGTTATCACTATTTTAATTTTG--ATATATATATATAGACAAAATTGCATATATTA---TTTCTTTTTTCCTTTTATTATGTGGttggatctcaagtgcagaaggttgagttcattacatttatcagttcatggcaccctgtcctcattaatatgtgcacgatctctctcatcttac-----tttatttaaaacatttctttcctgtctgtttctactaccattccccctaaggaaaacaattattataagtttcatgtgtaacattttatgggctcttaatttctattagtattgttgttttaggatattttattctataaaatagtattacattataatcttattcagtttcttactttttttcactcagcacactacttttaagagctatcacgttacaatgtctacatctagcccac--tttttctaaaaactgcat-ttttttgatgttgtacatcctcaaccttcgcaaatctgctctcccgttgatggacatctgggttgcttctaattccccattaccataaattatgccaaacaactgttgttatggacctgtgtaaggatttatttaggatatatacctggaagcaaaattgctcaggtccaat
s panTro5.chr6              29552777 651 + 175400573 GTTGTAGAAATAACATTAAAATAAGAATTTCCTCTTTAATAGTGATTCCTAGAGGTTATCACTATTTTAATTTTG--ATATATATATATAGACAAAATTGCATATATTA---TTTCTTTTTTCCTTTTATTATGTGGttggatctcaagtgcagaaggttgagttcattacatttatcagttcatggcaccctgtcctcattaatatgtgcacgatctctctcatctt---------tatttataacatttctttcttgtctgtttctactaccattccccctaaggaaaacaattattataagtttcatgtgtaacattttatgggctcttaatttctattagtattgttgttttaggatattttattctataaaatagtattacattataatcttattcagtttcttactttttttcactcagcacactacttttaagagctatcacgttacaatgtctatatctatcccac--tttttctaaaaactgcatgttttttgatgttgtacatcctcaaccttcgcaaatccgctctcccgttgatggacatctgggttgcttctaattccccattaccataaattatgccaaacaagtgttgttatggacctgtgtaaggatttatttaggatatatacctggaagcaaaattgctcatgtccaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29791024 649 + 173848474 GTTGTAGAAATAACATTAAAATAAGAATTTCCTCTTTAATAGTGATTCCTAGAGGTTATCACTATTTTAATTTTG----ATATATATATAGACAAAATTGCATATATTA---TTTCTTTTTTCCTTTTATTATGTGGttggatctcaagtgcagaaggttgagttcattacatttatcagttcatggcaccctgtcctcattaatatgtgcacgatctctctcatctt---------tatttataacatttctttcttgtctgtttctactaccattccccctaaggaaaacaattattataagtttcatgtgtaacattttatgggctcttaatttctattagtattgttgttttaggatattttattctataaaatagtattacattataatcttattcagtttcttactttttttcactcagcacactacttttaagagctatcacgttacaatgtctatatctatcccac--tttttctaaaaactgcatgttttttgatgttgtacatcctcaaccttcgcaaatccactctcccgttgatggacatctgggttgcttctaattccccattaccataaattatgccaaacaagtgttgttatggacctgtgtaaggatttatttaggatatatacctggaagcaaaattgctcaggtccaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5593823 657 +   6154872 GTTGTAGAAATAACATTAAAATAAGAATTTCCTCTTTAATAGTGATTCCTAGAGGTTATCACTATTTTAATTTTGATATATATATATATAGACAAAATTGCATGTATTA---TTTCTTTTTTCCTTTTATTATGTGGttggatctcaagtgcagaaggttgagttcattacatttatcagttcatggcaccctgtcctcattaatatgtgcacgatctctctcatcttac-----tttatttataacattactttcctgtctgtttctactaccattccccctaaagaaaacaattattataagtttcatgtgtaatattttatgggctcttaatttctattagtattgttgttttaggatattttattctataaaatagtattacattataatcttattcagtttcttactttttttcactcagcacactacttttaagagctatcatgttacgatgtctatatctagcccac--tttttctaaaaactgcacgttttttgatgttgtacatcctcaaccttcgcaaatctgctctcccgctgatggacatctgggttgcttctaattccccattaccataaattatgccaaacaagtgttgttatggacttgtgtaaggatttatttaggatatatacctggaagcaaaattgctcaggtccaat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29819862 661 + 172585720 GTTGTAGAAATAACATTAAAATAAGAATTTCCTCTTTAATAGTGATTCCTAGAGGTTTTCACTATTTTAATTTTGatatatatatatatagacaaaattgtatatatta---tTTGTTTTTTCCTTTTATTATGTGGttggatctcaagtgcagaaggttgaattcattacatttatcagttcatggcaccctatcctcattgatatgtgcacaatctctctcatcttacattaattaatttataacatttctttcctatctgtttctactaccattccccctaaagaaaacaattattataagtttcatgtgtaactttttatgggctcttaatttttattagtattgttgttttaggatattttattctataaaatagtattacattattatctt-ttcagtttcttactttttttcactcagcacactactttaaagagctatcatgttacaatgtctgtatctagcccac--tttttctaaaaattgcatgttttttgatggtgtacatcctcaacctttgcagatctactctcccactgatggacatctcggtcgcttctaattccccattaccatgaattatgccaaacaagtgttgttatggacctgtgtaaggatttatttaggatatgtacctggaagcaaaattgctcaggtccaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29482187 661 - 170955103 GTTGTAGAAATAACATTAAAATAAGAATTTCCTCTTTAATAGTGATTCCTAGAGGTTTTCACTATTTTAATTTTGatatatatatatatagacaaaattgtatatatta---tTTGTTTTTTCCTTTTATTATGTGGttggatctcaagtgcagaaggttgaattcattacatttatcagttcatggcaccctatcctcattgatatgtgcacaatctctctcatcttacattaattaatttataacatttctttcctatctgtttctactaccattccccctaaagaaaacaattattataagtttcatgtgtaactttttatgggctcttaatttctattagtattgttgttttaggatattttattctataaaatagtattacattataatctt-ttcagtttcttactttttttcactcagcacactactttaaagagctatcatgttacaatgtctgtatctagcccac--tttttctaaaaattgcatgttttttgatggtgtacatcctcaacctttgcagatctactctcccactgatggacatctcggttgcttctaattccccattaccatgaattatgccaaacaagtgttgttatggacctgtgtaaggatttatttaggatatgtacctggaagcaaaattgctcaggtccaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2468756 659 -   2996164 GTTGTAGAAATAACATTAAAATAAGAATTTCCTCTTTAATACTGATTCCTAGAGGTTTTCACTATTTTAATTTTG--ATATATATATATAGACAAAATTGTATATATTA---TTTGTTTTTTCCTTTTATTATGTGGttggatctcaagtgcagaaggttgaattcattacatttatcagttcatggcaccctatcctcattgatatgtgcataatctctctcatcttacattaattaatttataacatttctttcctatctgtttctactaccattccccctaaagaaaacaattattataagtttcatgtgtaactttttatgggctcttaatttctactagtattgttgttttaggatattttattctataaaatagtattacattataatctt-ttcagtttcttactttttttcactcagcacactactttaaagagctatcatgttacaatgtctgtatctagcccac--tttttctaaaaattgcatgttttttgatggtgtacatcctcaacctttgcagatctactctctcactgatggacatctcggttgcttctaattccccattaccatgaattatgccaaacaagtgttgttatggacctgtgtaaggatttatttaggatatgtacctggaagcaaaattgctcaggtccaat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      233522 658 +    766320 GTTGTAGAAATAACATTAAAATAAGAATTTCCTCTTTAACAGTGATTCCTAGAGGTTTTCACTATGTTAATTTTG--ATATATATATATAGACAAAATTGTATATATTA---TTTGTTTTTTCCTTTTATTATGTGGttggatctcaagtgcagaaggttgagttcattacatttatcaattcatggcaccctatcctcattgatatgtgcacaatctctctcaccttacgttaattaatttataacatttctttcctatctgtttctactaccattccccctaaagaaaacaattattataagtttcatgtgtaactttttatgggctcttaatttctattagtatt-tttttttaggatattttattctataaaatagtattacattataatctt-ttcagtttcttactttctttcactcagcacactacttttaagagctatcatgttaccatgtctgtatctagcccac--tttttctaaaaattgcatgttttttgatggtgtgcatcctcaacctttgcagatctactctcccactgatggacatctcggttgcttctaattccccattaccatgaattatgccaaacaagtgttgttatggacctgtgtaaggatttatttaggatatgtacctggaagcaaaattgctcaggtccaat
i cerAty1.NW_012002711v1   I 319 C 0
s chlSab2.chr17             28745414 659 -  71996105 gttgtagaAATAACATTAAAATAAGAATTTCCTCTTTAATAGTGATTCCTAGAGGTTTTCACTATTTTAATTTTG--ATATATATATATAGACAAAATTGTATATATTA---TTTGTTTTTTCCTTTTATTATGTGGTTGGATCTCAAGTGCAGAAGGTTGAATTCATTACATTTATCAGTTCATGGCACCCTATCCTCATTGatatgtgcacaatctctctcatcttacattaattaatttataacatttctttcctatctgtttctactaccattccccctaaagaaaacaattattataagtttcatgtgtaactttttatgggctcttaatttctattagtattgttgttttaggatattttattctataaaatagtattacattacaatctt-ttcagtttcttactttttttcactcagcacactacttttaagagctatcatgttacaatgtctgtatctagcccac--tttttctaaaaattgcatgctttttgatggtgtacatcctcaacctttgcagatctactctcccactgatggacatctcggttgcttctaattccccattaccgtaaattatgccaaacaagtgttgttatggacctgtgtaaggatttatttaggatatgtacctggaagcaaaattgctcaggtccaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      217675 657 -    352859 GTTGTAGAAATAACATTAAAATAAGAATTTCCTCTTTAACAGTGATTCCTAGAGGTTTTCACTATGTTAATTTTG--ATATATATATATAGACAAAATTGTATATATTA---TTTGTTTTTTCCTTTTATTATGTGGttggatctcaagtgcagaaggttgaattcataacatttatcagttcatggcaccctatcctcattgatatgtgcacaatctctctcaccttacgttaattaatttataacatttctttcctatctgtttctactaccattccccctaaagaaaacaattattataagtttcatgtgtaactttttatgggctcttaatttctattagtat--tttttttaggatattttattctataaaatagtattacattataatctt-ttcagtttcttactttttttcactcagcacactacttttaagagctatcatgttacaatgtctgtatctagcccac--tttttctaaaaattgcatgttttttgatggtgtacatcctcaacctttgcagatctactctcccactgatggacatctcggttgcttctaattccccattaccatgaattatgccaaacaagtgttgttatggacctgtgtaaggatttatttaggatatgtacctggaagcaaaattgctcaggtccaat
i manLeu1.NW_012099655v1   I 5174 C 0
s colAng1.NW_012115566v1     2375086 659 -   3067355 GTTGTAGAAATAGCATTAAAATAAGAATTTCCTCTTTAATAGTGATTCCTAGAAGTTTTCACTATTTTAATTTTG--atatatatatatagacaaaattatatatatta---tTTGGTTTTTCCTTTTATTATGTGGttggatctcaagtgcagaaggttgaattcattacatttgtcagttcatggcaccctatcctcattaatatgtgcacaatctctctcatcttacattaattaatttataacatttctttcctatctgtttctactaccattcccccgaaagaaaacaattattataagtttcatgtgtaacattttatgggctcttaatttctattagtattgttgttttaggatattttattctataaaatagtattacattataatctt-ttcagtttcttactttttttcactcagcacactacttttaaaagctatcatgttacaatgtctatatctagcccac--tttttctaaaaattgcatgttttttgatggtgtacatcctcaacctttgcagatctactctcccactgatggacatctgggttgcttctaattccccattaccataaattatgccaaacaagtgttgttatggacctgtgtaaggatttatttaggatatatacctggaagcaaaattgctcaggtccaat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr6             126598987 651 - 158406734 GTTGTAGAAATAACATTAAAATTAAAATTTTCTCTTTAATAGTGATTCCTAGAGGTTATTGCTATTTTCATTTTG----ATATACATATAGACAAAATTTTATATACTA---TTTCTTTTTTCCTTTTATTATGTGGttggatatcaagtgcagaaggttgagttcattatatttattggtttatggcacctcatcctcattaatctgtgtaagatcgctctcatatt-----aatttattcataacatttctttcctatctgtttctactaccattccccataaagaaaacagttattataagtttcatgcgtgactttttatgggctcttaatttctattagtattgttgttttaggatattttattcgataaaatagtattacattataatcttattcagtttctt--tttttttaactcaccacactacttttaagaattatcatgttacaatgtctacttctagcccac-ttttttttaacaattgcatgttttttgatggtgtaca-cctcaatctttgcatatctactctcccattgatggacatctgggttgcttctaatttcctattagcacaaattatgccaaacaagtgtttttatggacctgtataaggatttatttaggatatatatctggaagcaaaattgctcaggtccaat
i calJac3.chr6             C 0 I 531
s cebCap1.NW_016107522v1      216625 656 +   3820305 GTTATAGAAATAACATTAAAACAAAAATTTCCTCTTTAATAGTGATTCCTAGAGGTTATCACTATTTTAATTTTG----ATATACATATAGACAAAGTTTTATATATTACTTCTTCTTTTTTCCTTTTATTATATGGttggatctcaagtgcagaaggttgagttcattatatttatgagttcatggcaccttatcctcattaatctgtgtaagatctctctcatatt-----aatgtatttataacatttctttcctatctgtttctactaccattctccctaaagaaaacaattattataagttttatgggtaactttttatgggctcttaatttctattagtattgttgttttaggatattttattctataaaatagcattacattataatcttattcagtttctt--tttttttaactcaccacactacttttaagaattatcatgttacaatgtctacatctagctcactttttttttaacaattgcactttttttgatggggtacatcttcagtctttgtgtatccactctcccgttgatggacatctgggttgcttctaatttcccattagcataaattatgccaaacaagtgtttttatggacctgtataaggatttatttaggatatatatctggaagcaaaattgctcaggtcCAAT
i cebCap1.NW_016107522v1   C 0 I 550
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I

a score=24024.000000
s hg38.chr6_GL000254v2_alt    581070 4 +   4827813 atat
s panTro5.chr6              29553428 4 + 175400573 atat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29791673 4 + 173848474 atat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5594480 4 +   6154872 atat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29820523 4 + 172585720 atat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29482848 4 - 170955103 atat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2469415 4 -   2996164 atat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      234180 4 +    766320 atat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28746073 4 -  71996105 atat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1      218332 4 -    352859 atat
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2375745 4 -   3067355 atat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr6             126600169 4 - 158406734 atat
i calJac3.chr6             I 531 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I
e cebCap1.NW_016107522v1      217281 550 +   3820305 I

a score=2128898.000000
s hg38.chr6_GL000254v2_alt    581074 347 +   4827813 gagagacttaatttgaatttttatacccagaatgtgctccagaatgcttccatgaggctacactcctaccagcggggcagacgtgttcctgtcatttcctcacctgtcccaattcttggcactaccctgctttctaatacttactactcaaatagaatacaatgttacctcacttttaaactttggagaaattttaaacctgtaaaaaatttgtaaaaacaatacagaggcttctctttttatccctcaccttgtttccct-aatgttactatcttaacaaaatcataacacTTCTCTCTTTATAAAATAGCCTAAATAGCTTGAGGtgtt-------tttttatttttgttttt
s panTro5.chr6              29553432 347 + 175400573 gagagacttaatttgaatttttatacccagaatgtgctccagaatgcttccatgaggctacactcctaccagcggggcagacgtgttcctgtcatttcctcagctgtcccaattcttggcactaccctgctttctaatacttattactcaaatagaatacaatgttacctcacttttaaactttggagaaattttaaacctgtaaaaaatttgtaaaaacaatacagaggcttctctttttatccctcaccttgtttccct-aatgttactatcttaacaaaatcataACTCTTCTCTCTTTATAAAATAGCCTAAATAGCTTGAGGTGTT-------TTTTTGTTTTTGTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29791677 347 + 173848474 gagagacttaatttgaatttttatacccagaatgtgctccagaatgcttccatgaggctacactcctaccagcggggcagacgtgttcctgtcatttcctcagctgtcccaattcttggcactaccctgctttctaatacttattactcaaatagaatacaatgttacctcacttttaaactttggagaaattttaaacctgtaaaaaatttgtaaaaacaatacagaggcttctctttttatccctcaccttgtttccct-aatgttactatcttaacaaaatcataACTCTTCTCTCTTTATAAAATAGCCTAAATAGCTTGAGGTGTT-------TTTTTGTTTTTGTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5594484 346 +   6154872 gagagacttaatttgaatttttatacccagaatgtgctccaaaatgcttccatgaggctacactcctaccagcggggcagacgtgttcctgtcatttcctcagctgtcccaattcttggcactaccctgctttctaatacttactactcaaatagaatacaatgttacctcacttttaaactttggagaaattttaaacctgtaaaaaatttgtaaaaacaatacagaggcttctctttttatccctcaccttgtttccct-aatgttactatcttaacaaaatcataacacTTCTCTCTTTATAAAATAGCCTAAATAGCTTGAGGtg-t-------tttttgtttttgttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29820527 341 + 172585720 gagaggcttaatttgaatttttatacccagaatgtgctccagaatgctttcatgaggctacactcctaccagcggggcaaacatgttcctgtcatttcctcagctctcccaattcttggcactaccctgctttctaatacttactactcaaatagaatacaacgttacctcacttttaaactttggagaaattttaaacctataaaaaatttgtaaaaataatacagaagtttctc-ttttatccctcacctt-tttcccc-aatgttactatctt-gcaaaactgtaacacTTCTCTCTTTATAAAATAGCCTAAATAGCTTGAGGT----------tttttgtttttgttttt
i rheMac8.chr4             C 0 I 4
s macFas5.chr4              29482852 341 - 170955103 gagaggcttaatttgaatttttatacccagaatgtgctccagaatgcttccatgaggctacactcctaccagcggggcagacatgttcctgtcatttcctcagctctcccaattcttggcactaccctgctttctaatacttactactcaaatagaatacaacgttacctcacttttAAACTTTGGAGAAATTTTAAACCTATAAAAAATttgtaaaaataatacagaggtttctc-ttttatccctcacctt-tttcccc-aatgttactatctt-gcaaaactgtaacacTTCTCTCTTTATAAAATAGCCTAAAtagcttgaggt----------tttttgtttttgttttt
i macFas5.chr4             C 0 I 4
s macNem1.NW_012011356v1     2469419 347 -   2996164 gagaggcttaatttgaatttttatacccagaatgtgctccagaatgcttccatgaggctacactcctaccagcggggcagacatgttcctgtcatttcctcagctctcccaattcttggcactaccctgctttctaatacttactattcaaatagaatacaacgttacctcacttttaaactttggagaaattttaaacctataaaaaatttgtaaaaacaatacagaggtttctc-ttttatccctcacctt-tttcccc-aatgttactatctt-gcaaaactgtaacacTTCTCTCTTTATAAAATAGCCTAAATAGCTTGAGGTtttttg----tttttgtttttgttttt
i macNem1.NW_012011356v1   C 0 I 4
s cerAty1.NW_012002711v1      234184 346 +    766320 gagaggctttatttgaatttttatacccagaatgtgctccagaatgcttccatgaggctacactcctaccagtggggcagacatgtttctgtcatttcctcagctctcccaattcttggcactaccctgctttctaatacttactactcaaatagaatacaacgttacctcacttttaaactttggagaaattttaaacctataaaaaatttgtaaaaataatacagaggtttctc-ttttatccctcaccttgtttcccc-aatgttactatctt-gcaaaactgtaacacTTCTCTCTTTATAAAATAGCCTAAATAGCTTGAGGttttt------tgtttgtttttgttttt
i cerAty1.NW_012002711v1   C 0 I 4
s chlSab2.chr17             28746077 345 -  71996105 gagaggcttaatttgaatttttatacccagaatgtgctccagaatgcttccatgaggctacactcctaccagcggggcagacgtgttcctgtcatttcctcagctctcccaattcttggcactaccctgctttctaatacttacgactcaaatagaatacaacgttacctcacttttaaactttggagaaattttaaacgta-aaaaaatttgtaaaaacaatacagaggtttctc-ttttatccctcaccttgtttcccc-agtattactatctt-gcaaaactgtaacccttctctctttataaaatagcctaaatagcttgaggtttttta------tttgtttttgttttt
i chlSab2.chr17            C 0 I 4
s manLeu1.NW_012099655v1      218336 352 -    352859 gagaggctttatttgaatttttatacccagaatgtgctccagaatgcttccatgaggctacactcctaccagtggggcagacatgtttctgtcatttcctcagctctcccaattcttggcactaccctgctttctaatacttactactcaaatagaatacaacgttacctcacttttaaactttggagaaattttaaacctataaaaaatttgtaaaaataatacagaggtttctc-ttttatccctcaccttgtttcccc-aatgttactatctt-gcaaaactgtaacacTTCTCTCTTTATAAAATAACCTAAATAGCTTGAGGTTTTTTGtttgtttttgtttttgttttt
i manLeu1.NW_012099655v1   C 0 I 4
s colAng1.NW_012115566v1     2375749 343 -   3067355 gagagacttaatttgaatttttatacccagaatgtgctccagaatgcttccatgaggctacactcctaccagcggggcagacgtgttcctgtcatttcctcagctctcccaattcttggcactaccccgctttctaatacttactactcaaatagaatacaatgttacctcacttttaaactttggagaaattttaaacctataaaaaatttgtaaaaacaatacagaggtttctc-ttttatccctcaccttgtttcccctaatgttactgtctt-gcaaaactgtaacacTTCTCTCATTATAAAATAGCCTAAATAGCTTGAGTT----------TTTTTGTTTTTGTTTTT
i colAng1.NW_012115566v1   C 0 I 708
s calJac3.chr6             126600173 334 - 158406734 gagagtcttaatttggatttttatatccacaatgtactccagaatgcttccacaaggctacactcctaccagtggggcagatgtgttcctgtcatttccacagctgttccaattcttggcattaccctgctttgtaatacttactactcaaataTAATACAAAAATTCCTCacttttaaattttggacaaattttaaacctataaaaaacttattaaaataatacagagacttctc-ttttatcccttgt----ttcccct-aatgttactgtctt-aaacaaccataAGACTTCTCTCTTTATAAAATAGCCTACATAGCTTGAGGT----------GGTTTCTTTTCAT----
i calJac3.chr6             C 0 C 0
s cebCap1.NW_016107522v1      217831 333 +   3820305 GAGAGTcttaatttgaatttttatacccacaatgtactccagaatgcttccacaaggctacactcctaccagtggggcagatgtgttcctgtcatttcctcagctgtcccaattcttggcattaccttactttgtaatacttactactcaaatataatataaaattacctcacttttaaattttggacaaattttaaacctataaaaaatttataaaaat-atacaaagacttctt-ttttatcccttgt----ttcccct-aatgttacagtctt-acacaaccataacacTTCTCTCTTTATAAAATAGCCTACATAGCTTGAGGT----------GGTTTCTTTTCAT----
i cebCap1.NW_016107522v1   I 550 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I

a score=7354043.000000
s hg38.chr6_GL000254v2_alt    581421 1166 +   4827813 tcgcttttaactttttgGAACACTTTTTGCTCATATCTCTCGATCTGCTTTCTTATGCCTGTGCTAGCGTATAATAAAACTATAATaataataatgacatgtaataagtactacttatgccaaggattattctaggcttcaaaggtattattgtgttcaacatttacaataaatcttgtgaggcaaataatattgatattcctactttaaagataaggaaattaaggcacaggtcactaatcaacttatctacagtcactagcaaactactagctaa-cctgggactcaaactcaaggcagtttggcccccaagttttcattctttaccactatggtatTTTAAGGAAAAATTCGATATTATTTTATGAATATAGTTTTGCTTC----TCTTTTT-TTCAGTTGCAAAAGACCTAACGCATCTGATATATCAAAATATATCAGTCAACCATtatgcagaaaagggttaacttttcatgtctgtgttgcagaaccctgtatattcccaagaaaggcctatattcaggactggcccttggcaggctcctggaagaggagctctaagttctttgaatatcctgcctaataaaatgtt----tttttttaaa--taatttgttttattgggtcaca--atataaatttgatcagatagattatgctaacaaggtgatttatggtgcctatttttgctctggtgggctggggtctgagtagctgaggtcagttacacaggtgccgtatgcctacctgactgatcccccataaaaaccttctacatcaaacttgagtgaacttcctggttggcattattctgcatgtgttatcgtaccattgatggcacaattaagcacatcaatgtaactcactggaagaaaacacctggaagcttat----tcctggtttctcctagactcccggcacctcatgcactttttccctttgttcatttttaatatgataacttttcAATACTAAC-AGGGACACAAATATGCACATA---ACACATTATGCCATGTCTTATATCTTTCTTGAGTTGACGTTCTATGAGATATATTATCACATCAACACATGAGTTAAAATTGTCCTATTATCCATACCTTTCAATGCTGTCCATGTTGTTAAATTATAGCAGCTTTCTATTTTGATTTATAAATGGACAGGGATATATCAGTAAGACACTACCA
s panTro5.chr6              29553779 1171 + 175400573 TCGCTTTTAACTTTTTGGAACACTTTTTGCTCATATCTCTCGATCTGCTTTCTTATGCCTGTGCTAGTGTATAATAAAACTATAATaataataatgacatgtaataagtactacttatgccaaggattattctaggcttcaaaggtattattgtgttcaacattcacaataaatcttgtgaggcaaataatattgatattcctattttaaagataaggaaattaaggcacaggtcactaatcaacttatctacagtcactagcaaactactagctaa-cctgggactcaaactcaaggcagtttggcccccaagttttcattctttaccactatggtatTTTAAGGAAAAATTTGATATTATTTTATGAATATAGTTTTGCTTC----TCTTTTT-TTCAGTTGCAAAAGACCTAACGCATCTGATATATCAAAATATATCAGTCAACCATtatgcagaaaagggttaactttccatgtctgtgttgcagaacgctgtatattcccaagaaaggcctatattcaggactggcccttggcaggctcctggaagaggagctctaagttctttgaatatactgcctaataaaatgtt----tttttaaaaaaataatttgttttattgggtcacacaatataaatttgatcagatagattatgctaacaaggcgatttatggtgcctatttttgctctggtgggctggggtctgagtagctgaggtcagctacacaggtgccgtatgcctacctgactgattccccataaaaaccttctacatcaaacttgagtgagcttcctggttggcattattctgcatgtgttatcgtaccattgatggcacaattaagcacatcaatgtaactcactggaagaaaacacctggaagcttat----tcctggtttctcctagactcccggcacctcatgcactttttccctttgttcatttttaatatgataacttttcAATACTAAC-AGGGACACAAATATGCACATAC--ACACATTATGCCATGTCTTATATCTTTCTTGAGTTGACGTTCTATGAGACATATTATCACATCAACACATGAGTTAAAATTGTCCTGTTATCCATACCTTTCAATGCTGTCCATGTTGTTAAATTATAGCAGCTTTCTATTTTGATTTATAAATGGACAGGAATATATCAGTAAGACATTACCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29792024 1171 + 173848474 TCGCTTTTAACTTTTTGGAACACTTTTTGCTCATATCTCTCGATCTGCTTTCTTATGCCTGTGCTAGTGTATAATAAAACTATAATaataataatgacatgtaataagtactacttatgccaaggattattctaggcttcaaaggtattattgtgttcaacattcacaataaatcttgtgagacaaataatattgatattcctattttaaagataaggaaattaaggcacaggtcactaatcaacttatctacagtcactagcaaactactagctaa-cctgggactcaaactcaaggcagtttggcccccaagttttcattctttaccactatggtatTTTAAGGAAAAATTCGATATTATTTTATGAATATAGTTTTGCTTC----TCTTTTT-TTCAGTTGCAAAAGACCTAACGCATCTGATATATCAAAATATATCAGTCAACCATtatgcagaaaagggttaactttccatgtctgtgttgcagaacgctgtatattcccaagaaaggcctatattcaggactggcccttggcaggctcctggaagaggagctctaagttctttgaatatcctgcctaataaaatgtt----tttttaaaaaaataatttgttttattgggtcacacaatataaatttgatcagatagattatgcaaacaaggtgatttatggtgcctatttttgctctggtgggctggggtctgagtagctgaggtcagctacacaggtgccgtatgcctacctgactgattccccataaaaaccttctacatcaaacttgagtgagcttcctggttggcattattctgcatgtgttatcgtaccattgatggcacaattaagcacatcaatgtaactcactggaagaaaacacctggaagcttat----tcctggtttctcctagactcccggcacctcatgcactttttccctttgttcatttttaatatgataacttttcAATACTAAC-AGGGACACAAATATGCACATAC--ACACATTATGCCATGTCTTATATCTTTCTTGAGTTGACGTTCTATGAGACATATTATCACATCAACACATGAGTTAAAATTGTCCTGTTATCCATACCTTTCAATGCTGTCCATGTTGTTAAATTATAGCAGCTTTCTATTTTGATTTATAAATGGACAGGAATATATCAGTAAGACATTACCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5594830 1166 +   6154872 tggcttttaactttttgGAACACTTTTTGCTCATATTTCTCGATCTACTTTCTTATGCCTGTGCTAGTGTATAATAAAACTATaataataataatg--atgtaataagtgctacttatgccaaggattattctaggcttcaaaggaattattgtgttcaacattcacaataaatcttgtgaggcaaataatattgatattcctattttaaagataaggaaattaaggcacaggtcactaatcaacttatctacagtcactagcaaactactagctaa-cctgggactcaaactcaaggcagtttgacccccaagttttcattctttaccactatggtatTTTAAGGAAAAATTCGATATTATTTTATGAATATAGTTTTGCTTC----TCTTTTT-TTCAGTTGCAAAAGACCTAACGCATCTGATATATCAAAATATATCAGTCAACCATtatgcagaaaagggttaactttccatgtctgtgttgcagaaccctgcatattcccaagaaaggcctatattcaggactggcccttggcaggctcctggaagaggagctctaagttctttgaatatcctgcctaataaaatgtt----tttcttaaa---taatttgttttattgggtcacacaatataaatttgatcagatagattatgctaacaaggtgatttatggtgcctatttttgctctggtgggctggggtctgagtagctgaggtcagttacacaggtgccgtatgcctacctgactgatcccccataaaaaccctctacatcaaactcgagtgaacttcctggttggcattattctgcatgtgttatcgtaccattgatggcacaattaagcacatcaacgtaactcactggaagagaacacctggaagcttat----tcctggtttctcctggactcccggcacctcatgcactttttccctttgttcatttttaatatgataacttttcAATACTAAC-AGGGACACAAATATGTACATAC--ACACATTATGCCATGTCTTATATCTTTCTTGAGTTGACATTCTATGAGATATATTATCACATCAACACATGAGTTAAAATTGTCCTATTATCCATACCTTTCAATGCTGTCCATGTTGTTAAATTATAGCAGCTTTCTATTTTGATTTATAAATGGACAGGAATATATCAGTAAGACACTACCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29820872 1167 + 172585720 tcacttttagctttttgGAAAACTTTTTGCTCATATCTCTAGATCTACTTTCTTATGCCTATGCTAGTGTATAATAAAACTATaataataacagtgacacttaataagtactacttatgccaaggattattctagatttcaaaggcattattgtgttcaacattcacaataaatcctgtgaggcatataatattgatattcctattttaaagataaggaaattaaggcacaggtcactaatcaacttatctacagtcactagcaaattactagctaatcctgggactcaaactcaaggcagtttggccccaaagttttcattctttaccactatggtatTTTAAGGAAAAATTTGATATTATTTTATGAATATAGTTTTGCTTC---TTTTTTTT-TTCAGTTGTAAAACACCTAACGCATCTGATATATCAAA--ATATCAGTCAACCATtatgcagaaaagggttaacttttcacatctgtattgcagaaccctgtatactcctaagaaaggcctatattcgggactggctcttggcaggctcctgggagaggagctctaagttcttggaatatcctgcctaataaaatatttgtgtttttttaaa--taatttgttttcttgggtcacagaatataaatttgatcagatagattatgctaacagggtgatttatggtgccta-ttttgctctggtgggct-gggtctgagtagctgaggtcagtcacacaggtgccatatgcgtacctgactgatcccccataaaaaccctctacatcaaacttgagtgaacttcctggttgacattattctgcatgtgttatcataccattgatggcac-attaagcacatcaatgtaactcactggaagagaacacctagaagcttat----tcctggcttctcctagactccctgcacctcatgcactttttccctttgttcattttTAAT---ATAACTTTTCAATACTAAC-TTGGACACAAATATGTACATAC--ACACATTATGCCATGTCTTATATCTTTCTTGAGTTGACATTCTATGAGATATATTATCACATCAACACATGAGTTAAAATTGTCCTATGATCCATATCTTTCAAAGCTGTCCATGGTGTTGAATTATAGCAGCTTTCTATTTTGATTTATAAATGGACAGGAATATATTAGTAAAACACTACCA
i rheMac8.chr4             I 4 C 0
s macFas5.chr4              29483197 1167 - 170955103 tcacttttagctttttgGAAAACTTTTTGCTCATATCTCTAGATCTACTTTCTTATGCCTATGCTAGTGTATAATAAAACTATaataataacagtgacacttaataagtactacttatgccaaggattattctagatttcaaaggcattattgtgttcaacattcacaataaatcctgtgaggcaaataatattgatattcctattttaaagataaggaaattaaggcacaggtcactaatcaacttatctacagtcactagcaaattactagctaatcctgggactcaaactcaaggcagtttggccccaaagttttcattctttaccactatggtatTTTAAGGAAAAATTTGATATTATTTTATGAATATAGTTTTGCTTC---TTTTTTTT-TTCAGTTGTAAAACACCTAACGCATCTGATATATCAAA--ATATCAGTCAACCATtatgcagaaaaggtttaacttttcacatctgtattgcagaaccctgtatactcctaagaaaggcctatattcgggactggctcttggcaggctcctgggagaggagctctaagttcttggaatatcctgcctaataaaatatttgtgtttttttaaa--taatttgttttcttgggtcacagaatataaatttgatcagatagattatgctaacagggtgatttatggtgccta-ttttgctctggtgggct-gggtctgagtagctgaggtcagtcacacaggtgccatatgcgtacctgactgatcccccataaaaaccctctacatcaaacttgagtgaacttcctggttgacattattctgcatgtgttatcataccattgatggcac-attaagcacatcaatgtaactcactggaagagaacacctagaagcttat----tcctggcttctcctagactccctgcacctcatgcactttttccctttgttcattttTAAT---ATAACTTTTCAATACTAAC-TTGGACACAAATATGTACATAC--ACACATTATGCCATGTCTTATATCTTTCTTGAGTTGACATTCTATGAGATATATTATCACATCAACACATGAGTTAAAATTGTCCTATGATCCATATCTTTCAAAGCTGTCCATGGTGTTGAATTATAGCAGCTTTCTATTTTGATTTATAAATGGACAGGAATATATTAGTAAAACACTACCA
i macFas5.chr4             I 4 C 0
s macNem1.NW_012011356v1     2469770 1166 -   2996164 tCACTTTTAGCTTTTTGGAAAACTTTTTGCTCATATCTCTAGATCTACTTTCTTATGCCTATGCTAGTGTATAATAAAACTATaataataacagtgacacttaataagtactacttatgccaaggattattctagatttcaaaggcattattgtgttcaacattcacaataaatcctgtgaggcaaataatattgatattcctattttaaagataaggaaattaaggcacaggtcactaatcaacttatctacagtcactagcaaattactagctaatcctgggactcaaactcaaggcagtttggtcccaaagttttcattctttaccactatggtatTTTAAGGAAAAATTTGATATTATTTTATGAATATAGTTTTGCTTC----TTTTTTT-TTCAGTTGTAAAACACCTAACGCATCTGATATATCAAA--ATATCAGTCAACCATtatgcagaaaagggttaacttttcacatctgtattgcagaaccctgtatactcctaagaaaggcctatattcgggactggctcttggcaggctcctgggagaggagctctaagttcttggaatatcctgcctaataaaatatttgtgtttttttaaa--taatttgtttttttgggtcacagaatataaatttgatcagatagattatgctaacagggtgatttatggtgccta-ttttgctctggtgggct-gggtctgagtagctgaggtcagtcacacaggtgccatatgcgtacctgactgatcccccataaaaaccctctacatcaaacttgagtgaacttcctggttgacattattctgcatgtgttatcataccattgatggcac-attaagcacatcaatgtaactcactggaagagaacacctagaagcttat----tcctggcttctcctagactccctgcacctcatgcactttttccctttgttcattttTAAT---ATAACTTTTCAATACTAAC-TTGGACACAAATATGTACATAC--ACACATTATGCCATGTCTTATATCTTTCTTGAGTTGACATTCTATGAGATATATTATCACATCAACACATGAGTTAAAATTGTCCTATGATCCATATCTTTCAAAGCTGTCCATGGTGTTGAATTATAGCAGCTTTCTATTTTGATTTATAAATGGACAGGAATATATTAGTAAAACACTACCA
i macNem1.NW_012011356v1   I 4 C 0
s cerAty1.NW_012002711v1      234534 1165 +    766320 tcacttttagctttttgGAAAACTTTTTGCTCATATCTCTAGATCTACTTTCTTATGCCTATGCTAGTGTATAATAAAACTATaataataacagtgacacttaataagtactacttatgccaaggattattctaggtttcaaaggcattattgtgttcaacattcacaataaatcctgtgaggcaaataatattgatattcctattttaaagataaggaaattaaggcacaggtcactaatcaacttatctacagtcactagcaaattactagctaaccctgggactcaaactcaaggtagtttggccccaaagttttcattctttaccactatggtatTTTAAGGAAAAATTTGATATTATTTTATGAATATAGTTTTGCTTC----TTTTTTT-TTCAGTTGTAAAACACCTAATGCATCTGATATATCAAA--ATATCAGTCAACCATtatgcagaaaagggttaacttttcacatctgtattgcagaaccctgtatcctcctaagaaaggcctatattcgggactggctcttggcaggctcctgggagaggagctctaagttcttggaatatcctgcctaataaaatgtttgtgttttttaaaa--taatttgttttcttgggtcacagaatataaatttgatcagatagattatgctaacagggtgatttatggtgccta-ttgtgctctggtgggct-gggtctgagtagctgaggtcagtcacacaggtgccatctgcgtacctgactgatcccccataaaaaccctctacatcaaacttgagtgaacttcctggttgacattattctgcatgtgttatcataccattgatggcac-attaagcacatcaatgtaactcactggaagagaacacctagaagcttat----tcctggcttctcctagactccctgcacctcatgcactttttccctttgttca-ttttaat---ttAACTTTTCAATACTAAC-TTGGACACAAATATGCACATAC--ACACATTATGCCATGTCTTATATCTTTCTTGAGTTGACATTCTATGAGATATATTATCACATCAACACATGAGTTAAAATTGTCCTCTGATCCATATCTTTCAAAGCTGTCCATGATGTTGAATTATAGCAGCTTTCTATTTTGATTTATAAATGGACAGGAATATATTAGTAAAACACTACCA
i cerAty1.NW_012002711v1   I 4 C 0
s chlSab2.chr17             28746426 1163 -  71996105 tCACTTTTAGCTTTTTGGAAAACTTTTTGCTCATATCTCtagatctactttcttatgcctatgctagtgtataataaaactatAATAATAACAGTGACACTTAATAAGTACTACTTATGCCAAGGATTATTCTAGGTTTCAAAGGCATTattgtgttcaacattcacaataaatcctgtgaggcaaataatattgatattcctattttaaagataaggaaattaaggcacaggtcactaatcaacttatctacagtcactagcaaattactagctaaccctgggactcaacctcaaggcagtttggccccaaagctttcattctttaccactatggtattttaaggaaaaatttgatattattttatgagtatagttttgcttc----tttttttcttcagttgtaaaaCACCTAACGCATCTGATATATCAAA--ACATCAGTCAACCATTACGCAGAAAAGGGCTAACTTTTCACGTCTCTATTGCAGAACCCCGTATACTCCCAAGAAAGGCCTATAttcaggactggctcttggcaggctcctgggagaggagctctaagttcttggaatatcctgcctaataaaaaatt----tttttttaaa--taatttgttttcttgggccacagaatataaatttgatcagatagattatgctaacagggtgatttatggtgccta-ttttgctctggtgggct-gggtctgagtagctgaggtcagtcacacaggtgccatatgcgtacctggctgatccctcataaaaaccctctacatcaaacttgagtgaacttcctggttgatgctattctgcatgtgttatcacaccattgacggcac-attaagcacatcaatgtaactcactggaagagaacacctagaagcttat----tcctggcttctcctagactccctgcacctcatgcaccttttccctttgttcatttttaat---ataactttccagtactaac-ttggacacaaatatgcacatac--acacattatgccatgtcttatATCTTTCTTGAGTTGACATTCTATGAGATATATTATCACATCAACACATGAGTTAAAATTGTCCTATGATCCATATCTTTCAAAGCTGTCCATGGTGTTGAATTACAGCAGCTTTCTATTTTGATTTATAAATGTACAGGAATATATTAGTAAAACACTACCG
i chlSab2.chr17            I 4 C 0
s manLeu1.NW_012099655v1      218692 1165 -    352859 tCACTTTTAGCTTTTTGGAAAACTTTTTGCTCATATCTCTAGATCTACTTTCTTATGCCTATGCTAGTGTATAATAAAACTATaataataacagtgacacttaataagtactacttatgccaaggattattctaggtttcaaaggcattattgtgttcaacattcacaataaatcctgtgaggcaaataatattgatattcctattttaaagataaggaaattaaggcacaggtcactaatcaacttatctacagtcactagcaaattactagctaaccctgggactcaaactcaaggcagtttggccccaaagttttcattctttaccactatggtatTTTAAGGAAAAATTCGATATTATTTTATGAATATAGTTTTTCTTC----TTTTTTT-TTCAGTTGTAAAACACCTAATGCATCTGATATATCAAA--ATATCGGTCAACCATtatgcagaaaagggttaacttttcacatctgtattgcagaaccctgtatcctcctaagaaaggcctatattcgggactggctcttggcaggctcctgggagaggagctctaagttcttggaatatcctgcctaataaaatgtttgtgtttttttaaa--taatttgttttcttgggtcacagaatataaatttgatcagatagattatgctaacagggtgatttatggtgccta-ttgtgctctggtgggct-gggtctgagtagctgaggtcagtcacacaggtgccatatgcgtacctgactgatcccccataaaaaccctctacatcaaacttgagtgaacttcctggttgacattattc-gcatgtgttatcataccattgatggcac-attaagcacatcaatgtaactcactggaagagaacacctagaagcttat----tcctggcttctcctagactccctgcacctcatgcactttttccctttgttcatttttaat---ttaacttttcgATACTAAC-TTGGACACAAATATGCACATAC--ACACATTATGCCTTGTCTTCTATCTTTCTTGAGTTGACATTCTATGAGATATATTATCACATCAACACATGAGTTAAAATTGTCCTATGATCCATATCTTTCAAAGCTGTCCATGGTGTTGAATTATAGCAGCTTTCTATTTTGATTTATAAATGGACAGGAATATATTAGTAAAACACTACCA
i manLeu1.NW_012099655v1   I 4 C 0
s colAng1.NW_012115566v1     2376800 1152 -   3067355 TCGCCTTTAGCTTTTTGGAACACTTTTTGCTCATATCTCTAGATCTCCTTTCTTATGCCTATGCTAGTGTATAATAAAACTATaataataacaatgacacttaataagaactacttatgcgaaggattattctaggtttcaaaggcattattgtgttcaacattcacaataaatcctgtgaggcaaataatattgatattcctattttaaagataaggaaattaaggcacaggtcactaatcaacttatctacagt-actagcaatttactagctaaccctgggactcaaactcaaggcagtttggccccaaagttttcattctttaccactatggtatTTTAAGGAAAAATTTGATATTATTTTATGAATGTAGTTTTGCTTCTTTTTTTTTTT-TTCAGTTGTAAAACACCTAACGCGTCTGATATATCAAA--ATATCAGTCAACCATtatgcagaaaggggttaacttttcacgtctgtattgcagaactctgtatactcccaaaaaaggcctatattcgggactggctcttggcaggctcctgggagaggagctctaagttcttggaatatcttacctaataaaatgtt----tttttaaaaa--taatttgttttcttgggtcacagaatataaatttgatcagatagattatgctaacagggtgatttatggtgtcta-ttttgctctggtgggct-gggtctgagtagctgaggtcagtcacacaggtgccatatgcgtacctgactgatcccccataaaaac-------------cttgagtgaacttcctggttgacattattctgcatgtgttatcataccactgatggcac-attaagcacatcaatgtaactcactggaagagaacacctagaagcttat----tcctggtttctcctagactccctgcacctcatgcactttttccctttgttcattttTAAT---ATAACTTTTCAATACTAAC-TTGGACACAAATATGCACATAC--ACACATTATGCCATGTCTTATATCTTTCTTGAGTTGACATTCTATGAGATATATCATCACATCAACATATGAATTAAAATTGTCCTATGACCCATATCTTTCAAAGCTGTCCATGGTGTTGAATTATAGCAGCTTTCTATTTTGACTTATAAATGGACAGGAATATATTAGTAAAACACTACCA
i colAng1.NW_012115566v1   I 708 C 0
s calJac3.chr6             126600507 1143 - 158406734 ATGCTTTTAGCTTTTTGTAAGACTTTTTGCACATATCCCTAGATCTACTTTTTTATGTATATGCTAATGTATAATAAAACT---ataacaacaatgatatttaataaatgctacttatgccaaggattattctaggcttcaaaggcattattttgttcaacattcacaataaatactgtgaggcaaataatattgatatttctattttaaagataaggaaattaagatacttgtcactaatcaacttgtctacactcactagcaaattactagctaa-cctgggagtcaaactcaaggcagtttagccccaaagtttccattctttaccactgtggtatTTTACAGAAAAATTGGATATTATTTTATAAATATAGTTTTGCTTT--------TTT-TTCAGTTGCAAAAGACCTAAGGCATCTGATATATCAAAATATATTAGGCAATCATGAtgcagaaa-gggttacagtttcaggtctgggttgcgtgaccctgcacactcccaaggaaggcctatattcaggactggcccttggcaagctcctgggggaggagctctaagctcttggaatat----ccgaataaaa--------ttttttaaaatataatttgttttcttgggtcacacaatataaatttgatcagagagattatactaaccaagtgatttgtggt--ctgtttttgctctggtagcctggagtctgagtagctgaggtcagtcacacaggtgccataggcatacatgactgatcccccataaaaaccctctacagc---------tgaacttcctggttgacattattctgcatgtgctatcatataattaatggcacaattaagcacatcaatgtaactcactggatgagaacacctggaagtctaggagactagggagtctcctagactccctgcactacatgcagtttttccctttgttcattttTAAT---ATAAATTTTCAGTACTAAC-ATTGACACTGATATGCACAA----ACACATTATACCATGTCTTATATCCTTCTTGTGTTGACATTCTATGAGCTATGTTATCACATCAACACATATGTTAAAATTGTCCTATTACCCATGCCTTTCAATGCTGTCCTTAGTGTTAAATTATAGCAGCTTTCTATTTTGATTTGTAAATGGACAGGAATATATTAGTAAAACACAACCA
i calJac3.chr6             C 0 M 247
s cebCap1.NW_016107522v1      218164 1151 +   3820305 ATGCTTTTAGCTTTTTGGAACACTTTTTGTGCATATCCCTAGATCTACTTTCTTATGCATATGCTAATGTATAATAAAACTATaataataacaatgatatttaataaatgctacttatgccaaggattattctaggcttcaagggcattattttgttcaacactcacaataaatcctgtgagccagataatactgatattcctattttaaagataaggaaattaagacaccggtcactaatcaacttatctgcagtcactagcaaattactagctag-cctgggagtcaaactcaaggcagtttgaccccaaagtttccattttttaccactatggtatTTTAAAGAAAAATTGGATATTATTTTATAAATATAGTTTTGCTTT--------TTC-TTCAGCTGCAAAAGACCTAAGGCATCTAACATATCAAAATATATTAGTCAATCATtatgcagaaa-gggttaagttttcaggtctgtgttgcataaccctgcatactcccaagaaaggcctatattcaggactggcccttggcaggctcctcagggaggagctctaagctcttggaatatcctgcctaataaaa--------ttttttaaaatataatttgttttcttgggtcacacaatataaatttgatcagatagattatactaaccaggtgatttatggt--ctgtttttgctctggtaggctggagtctgagtagctgaggtcagtcacacaggtgccataggcatacatgactgatcccccataaaaaccctctacagcaaacttgagtgaacttcctggttgacattattctgcatgtgttatcgtataatgaatggcacaattaagcacatcaatgtaactcactggacgagaacacctggaagcctat----tcctggtttctcctagactcccttcac---------tttttccctttgttcattttTAAT---ATAACTTTTCAGTACTAACAATGGACACAGATATGCACAAACACACACATTATGCCATGTCTTATATCCCCCTTGTGTTGACATTCTATGAGCTATGTTATCACATCAACACATGTGTTAAAATTGTCCTATTACCCATGCCTTTCAATGCTGTCCTTAGTGTTAAATTACAGCCGCTTTCTATTTGGATTTGTAAATGGAAAGGAATATATTAGTAAAACACAACCA
i cebCap1.NW_016107522v1   C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I

a score=486419.000000
s hg38.chr6_GL000254v2_alt    582587 88 +   4827813 GAGTAGTGCAGTGAATATGCATGCATTCTTACATGTTTACAGagagagataggaaaataaaaggaaaggaatgggatggaaagaaaag
s panTro5.chr6              29554950 88 + 175400573 GAGTAGTGCAGTGAATATGCATGCATTCTTACATGTTTATAGagagagataggaaaagaaaaggaaaggaatgggatggaaagaaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29793195 88 + 173848474 GAGTAGTGCAGTGAATATGCATGCATTCTTACATGTTTATAGagagagataggaaaagaaaaggaaaggaatgggatggaaagaaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5595996 88 +   6154872 GAGTAGTGCAGTGAATATGCATGCATTCTTACATGTTTACAGagagagataggaaaagaaaaggaaaggaatgggatggaaagaaaag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29822039 88 + 172585720 GAGTGGTGCAGTGAATATGCATGTATTCTTATGTGTTTACAGAGAGAgataggaaaagagaaggaaaggaatgggatggaaagaaaag
i rheMac8.chr4             C 0 I 9
s macFas5.chr4              29484364 88 - 170955103 GAGTGGTGCAGTGAATATGCATGTATTCTTATGTGTTTACAGagagagataggaaaagagaaggaaaggaatgggatggaaagaaaag
i macFas5.chr4             C 0 I 9
s macNem1.NW_012011356v1     2470936 88 -   2996164 GAGTGGTGCAGTGAATATGCATGTATTCTTATGTGTTTACAGagagagataggaaaagagaaggaaaggaatgggatggaaagaaaag
i macNem1.NW_012011356v1   C 0 I 9
s cerAty1.NW_012002711v1      235699 88 +    766320 GAGTGGTGCAGTGAATATGCATGTATTCTTATGTGTTTACAGAGAGAgataggaaaagagaaggaaaggaatgggatggaaagaaaag
i cerAty1.NW_012002711v1   C 0 I 9
s chlSab2.chr17             28747589 88 -  71996105 GAGTGGTCCAGTGAATATGCATGTATTCTTATGTGTTTACAGAGAGAGATAGGAAAAGAAAAGGAAAGGAATGGGATGGAAAGAAAAG
i chlSab2.chr17            C 0 I 870
s manLeu1.NW_012099655v1      219857 88 -    352859 GAGTGGTGCAGTGAATATGCATGTATTCTTATGTGTTTACAGagagagataggaaaagagaaggaaaggaatgggatggaaagaaaag
i manLeu1.NW_012099655v1   C 0 I 9
s colAng1.NW_012115566v1     2377952 88 -   3067355 GAGTGGTGCAGTGAATATGCATGTATTCTTATGTGTTTACAGagagagataggaaaagaaaaggaaaggaatgagatggaaagaaaag
i colAng1.NW_012115566v1   C 0 I 9
s cebCap1.NW_016107522v1      219315 75 +   3820305 GAGTAGTGCCGTGAATATGCATGTA----------TTTACagagagag--aggaaaagaaaaggaaaggaatg-gatggaaagaaaag
i cebCap1.NW_016107522v1   C 0 I 3
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I
e calJac3.chr6             126601650 247 - 158406734 M

a score=1338763.000000
s hg38.chr6_GL000254v2_alt    582675 289 +   4827813 --gaaagaaataaataaatgaaagaaaagaaaatgaaagaataagaaaggaaagggaaggaaTGCCAGCCTTTCCCTAAAGACACATGACACAACTTGAGACCAAAAGTCATAGCATTATAAACAGAATCCCTACGTTTATAACTCTTTCTGTTTGATTTTTACCCTCAGAAGGAAGATTAC-AAAAAACAATGCAACTGAAATTCATACTTCATAATAATGGTTAAAGCAATAACCATTAATAGTTCATAAGATTTGAGTCCAATAACTTTTAAAGGCA---------------TAATTCTTTATG
s panTro5.chr6              29555038 287 + 175400573 --gaaagaaataaataaatgaaagaaaagaaaatgaaagaataagaaaggaaagggaaggaaTTCCAGCCTTTCCCTAAAGAAACATGACACAACTTGAGACCAAAAGTCATAGCATTATAAACAGAATCCCTACGTTTATAACTCTTT--GTTTGATTTTTACCCTCAGAAGGAAGATTAC-AAAAAACAATGCAACTGAAATTCATACTTCATAATAATGGTTAAAGCAATAACCATTAATAGTTCATAAGATTTGAGTCCAATAACTTTAAAAGGCA---------------TAATTCTTTATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29793283 287 + 173848474 --gaaagaaataaataaatgaaagaaaagaaaatgaaagaataagaaaggaaagggaaggaaTTCCAGCCTTTCCCTAAAGAAACATGACACAACTTGAGACCAAAAGTCATAGCATTATAAACAGAATCCCTACGTTTATAACTCTTT--GTTTGATTTTTACCCTCAGAAGGAAGATTAC-AAAAAACAATGCAACTGAAATTCATACTTCATAATAATGGTTAAAGCAATAACCATTAATAGTTCATAAGATTTGAGTCCAATAACTTTAAAAGGCA---------------TAATTCTTTATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5596084 290 +   6154872 --gaaagaaataaataaatgaaagaaaagaaaatgaaagaataagaaaggaaagggaaggaaTTCCAGCCTTTCCCTAAAGACACATGACACAACTTGAGACCAAAAGTCATCGCATTATAAACAGAATCCCTACGTTTATAACTCTTTCTGTTTGATTTTTACCCTCAGAAGGAAGATTACAAAAAAACAATGCAACTGAAATTCATACTTCATAATAATGGTTAAAGCAATAACCATTAATAGTTCATAAGATTTGAGTCCAATAACTTTTAAAGGCA---------------TAATTCTTTATG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29822136 289 + 172585720 --gaaagaaataaataaatgaaagaaaagaaaatgaaagactaagaaaggaaagggaaggaaTTCCAGCCTTTCCATAAAGAAGCATGACGCGACTTGAGACCAAAAGTCATAGCATTATAAACAGAATCCCTACTTTTGTAAATCTTTCTGTTTGATTTTTACCCTCAGAAGGAAGATTAC-AAAAAACAGTGCAACTGAAATTCATATTTCATAATAATGGTTGAAACAATAACCATTAATAGTTCGTAAGATTTGAGTCCAATAACTTTTAAAGGCA---------------TAATTCTTTATG
i rheMac8.chr4             I 9 C 0
s macFas5.chr4              29484461 289 - 170955103 --gaaagaaataaataaatgaaagaaaagaaaatgaaagactaagaaaggaaagggaaggaaTTCCAGCCTTTCCATAAAGAAGCATGACGCGACTTGAGACCAAAAGTCATAGCATTATAAACAGAATCCCTACTTTTGTAAATCTTTCTGTTTGATTTTTACCCTCAGAAGGAAGATTAC-AAAAAACAGTGCAACTGAAATTCATATTTCATAATAATGGTTGAAACAATAACCATTAATAGTTCGTAAGATTTGAGTCCAATAACTTTTAAAGGCA---------------TAATTCTTTATG
i macFas5.chr4             I 9 C 0
s macNem1.NW_012011356v1     2471033 289 -   2996164 --gaaagaaataaataaatgaaagaaaagaaaatgaaagactaagaaaggaaagggaaggaaTTCCAGCCTTTCCATAAAGAAGCATGACACGACTTGAGACCAAAAGTCATAGCATTATAAACAGAATCCCTACTTTTGTAAATCTTTCTGTTTGATTTTTACCCTCAGAAGGAAGATTAC-AAAAAACAGTGCAACTGAAATTCATATTTCATAATAATGGTTGAAACAATAACCATTAATAGTTCGTAAGATTTGAGTCCAATAACTTTTAAAGGCA---------------TAATTCTTTATG
i macNem1.NW_012011356v1   I 9 C 0
s cerAty1.NW_012002711v1      235796 304 +    766320 --gaaagaaataaataaatgaaagaaaagaaaatgaaagactaagaaaggaaagggaaggaaTTCCAGCCTTTCCATAAAGAAGCATGACACGACTTGAGACCAAAAGTCATAGCATTATAAACAGAATCCCTACTTTTGTAAATCTTTCTGTTTGATTTTTACCCTCAGAAGGAAGATTAC-AAAAAACAGTGCAACTGAAATTCATATTTCATAATAATGGTTGAAACAATAACCATTAATAGTTCGTAAGATTTGAGTCCAATAACTTTTAAAGGCAATAACTTTTAACTTTTAATTCTTTATG
i cerAty1.NW_012002711v1   I 9 C 0
s manLeu1.NW_012099655v1      219954 304 -    352859 --gaaagaaataaataaatgaaagaaaagaaaatgaaagactaagaaaggaaagggaaggaaTTCCAGCCTTTCCATAAAGAAGCATGACACGACTTGAGACCAAAAGTCATAGCATTATAAACAGAATCCCTACTTTTGTAAATCTTTCTGTTCGATTTTTACCCTCAGAAGGAAGATTAC-AAAAAACAGTGCAACTGAAATTCATATTTCATAATAATGGTTGAAACAATAACCATTAATAGTTTGTAAGATTTGAGTCCAATAACTTTTAAAGGCAATAACTTTTAACTTTTAATTCTTTATG
i manLeu1.NW_012099655v1   I 9 C 0
s colAng1.NW_012115566v1     2378049 289 -   3067355 --ggaaaaaataaataaatgaaagaaaagaaaatgaaagactaagacaggaaagggaaggaaTTCCAGCCTTTCCATAAAGAAGCATGACACAACTTGGGACCAAAAGTCATAGCATTATAAACAGAATCCCTACTTTTGTAAATCTTTCTGTTTGATTTTTACCCTCAGAAGGAAGATTAC-AAAAAACAATGCAACTGAAATTCATATTTCATAATAATGGTTGAAACAATAACCATTAATAGTTCGTAAGATTTGAGTCCAATAACTTTTAAAGGCA---------------TAATTCTTTATG
i colAng1.NW_012115566v1   I 9 C 0
s cebCap1.NW_016107522v1      219393 284 +   3820305 gaaaaggaaagaaataaatgaaagaaaagaaaatgaaagaata----aggaaagggaaagaaTTCCAGCCTTTCCGTAAAGAAGCATGATACAATTTGAGACCAGAAGTCATAGCATTATAAACAGAATCCCCACTTTTGTAACTCTTTCTGTTTTATTTTTATCCTC---AGGAAGATTAC-AAAAAACCATGCAACTGAAACCCATACTTCATAATAATGGTTGAAACAACAACCATTAATAGTTCATAACATTTGAGTCCAATAACTTTTAAAGGCA---------------TACTTCTTTCTG
i cebCap1.NW_016107522v1   I 3 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I
e calJac3.chr6             126601650 247 - 158406734 M
e chlSab2.chr17             28747677 870 -  71996105 I

a score=4363695.000000
s hg38.chr6_GL000254v2_alt    582964 834 +   4827813 AGCGTATTTTATTTCCCTTTATGCGCAGCTCTAGGCTCCTTTTCCTACTTCCCTGTTTCTAAAAGGTATCCACTATACATTTCTG-AAAAATTATG-TTTTTGCCTTTGACATCTAAagcttcctgatataatgtgaaatcattcttcaaagtaggtttagcaatttacacccttaccaaccttgtatatgagctctcagagctttacatacttatccaacgagt---tactactctaaggatactgacagatacagcacactctacttttaatttgctttttctatcttattagacatttttgtttgtgtgtttactaggcatttggatttgtttgcagacttttgctcattttcattttggccattttctttttcttatttttaagggaattatgtgtctctttagaatactaaactgtgccacttaatagaagtggcagatatccctttcccttctgtagcctgatttttcattcattctgtggtttcctttgatgtgaagatgctctaattttagattgcagaattattaaaataagtctttctctctatgctaaagtcttttttagttcttttgttaaggaatgttttccactcccaaggacataaagataatcactttataggtactttaaaaag---ttttaaagttttgactttaatatttcaatctttaatccacctgaaactcatttttagatacactcatagtgagaaatatttcaatctatct----ttcttttcttaatgtggaaaaccaattgccccagtgccatttactgacttgcaatgtgtgtgtgtgtgt----gtatgtatatatatatatataca----------------------tacacacacagatct
s panTro5.chr6              29555325 828 + 175400573 AGCGTATTTTATTTCCCTTTATGCACAGCTCTAGGCTCCTTTTCCTACTTCCCTGTTTCTAAAAGGTATCCACTATAAATTTCTG-AAAAATTATG-TTTTTCCCTTTGACATCTAAagcttcctgatataatgtgaaaccattcttcaaagtagttttagcaatttacacccttaccaaccttgtatatgagctctcagagctttacatacttatccaacgagt---tactactctaaggatactgacagatacagcacactctacttttaatttgctttttctatcttattagacatttttgtttatgtgtttactaggcatttgggtttgtttgcagacttttgctcattttcattttggccattttctttttcttatttttaagggaattatgtgtctctttagaatactaaactgtgccacttaatagaagtggcagatatccctttcccttctgtagcctgatttttcattcattctgtggtttcctttgatgtgaagatgctctaattttagattgcagaattattaaaataagtctttctctttatgctaaagtcttttttagttcttttgttaaggaatgttttccactcccaaggacatgaagataatcactttataggtactttaaaaag---ttttaaagttttgactttaatatttcaatctttaatccacctgaaactcatttttagatacactcatagtgagaaatatttcaatctatttatttttcttttcttaatgtggaaaaccaattgccccagtgccatttactgacttgcaatgtgtgtgtgtgtgt------atgtatatatatatatataca------------------------------cagatct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29793570 828 + 173848474 AGCGTATTTTATTTCCCTTTATGCACAGCTCTAGGCTCCTTTTCCTACTTCCCTGTTTCTAAAAGGTATCCACTATAAATTTCTG-AAAAATTATG-TTTTTCCCTTTGACATCTAAagcttcctgatataatgtgaaaccattcttcaaagtagttttagcaatttacacccttaccaaccttgtatatgagctctcagagctttacatacttatccaacgagt---tactactctaaggatactgacagatacagcacactctacttttaatttgctttttctatcttattagacatttttgtttatgtgtttactaggcatttgggtttgtttgcagacttttgctcattttcattttggccattttctttttcttatttttaagggaattatgtgtctctttagaatactaaactgtgccacttaatagaagtggcagatatccctttcccttctgtagcctgatttttcattcattctgtggtttcctttgatgtgaagatgctctaattttagattgcagaattataaaaataagtctttctctttatgctaaagtcttttttagttcttttgttaaggaatgttttccactcccaaggacatgaagataatcactttataggtactttaaaaag---ttttaaagttttgactttaatatttcaatctttaatccacctgaaactcatttttAGATACACTCATAGTGAGAAATATTTCAATCtatttatttttattttcttaatgtggaaaaccaattgccccagtgccatttactgaCTTGCAAtgtgtgtgtgtgtgt------atgtATATATATatatataca------------------------------cagatct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5596374 858 +   6154872 AGCATATTTTATTTCCCTTTATGCACAGCTCTAGGCTCCTTTTCCTACTTCCCTGTTTCTAAAAGGTATCCACTATAAATTTCTG-AAAAATTATG-TTTTTCCCTTTGACATCTAAagcttcctgatataatgtgaaatcattcttcaaagtagttttagcaatttacacccttaccaaccttgtatatgagctctcagagctttacatacttatccaacgagt---tactactctaaggatactgacagatacagcacactctacttttaatttgctttttctatcttattagacatttttgtttgtgtgtttactaggcatttggatttgtttgcagacttttgctcattttcattttggccattttctttttcttatttttaagggaattatgtgtctctttagaatactaaactgtgccactcaatagaagtggcagatatccctttcccttctgtagcctgatttttcattcattctgtggtttcctttgatgtgaagatgctctaattttagattgcagaattattaaaataagtctttctctttatgctaaagtcttttttagttcttttgttaaggaatgttttccactcccaaggacataaagataatcactttataggtactttaaaaag---ttttaaagttttgactttaatatttcaatctttaatccacctgaaactcatttttagatacactcatagtgagaaatatttcaatctatttatttttcttttcttaatgtggaaaaccaattgccccagtgccatttactgacttgcaatgtgtgtgtgtgtgt------atgtatatatatatatatatatatatatatatatatatatatatacacacacagatct
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29822425 818 + 172585720 AGCGTATTTTATTTCCCTTTATGGACAGCTCTAGGCTCCTTTTCCTACTTCCCTGCTTCTAAAAGATATCTACTATAAATTTCTGAAAAAATTATA-TTTTTCCCTTTGACatctaaaactttccaatatgatgtgaaattatttttcaaagtagttttagccatttacactcttaccaaccttgtatacgagctctcagagctttacatacttacccaacgaggtactactactctaaggatactgacagatagagcacactctacttttaatttgctttttctaccttattagacatttttgtttatgtgtttactaggcatttggatttctttgcagacttttgctcattttcattttggtcattttctttttcttatttttaagggaattatgtgtctctttagaatactaaactgtgccacttaatagaagtggcagatatctctttcccttctgtagcctgaattttcattcattctgtggtttcctttgatgtcaagatgctctaattttatattgtggaattattaaaataagtc-ttctctttatgctaaagtcttttttagttcttctgttaaggaatgttttccattcccaaggacataaagataatgactttataggtactttaaaaag---ttttaaagttttaactttaatatttcaatctttaatccacctgaaactcatttttagatatacttatagtgagaaatatttcaatgtatttatttttcttttcttaatgtggaaaaccaattgccccagtgccatttactgacttgcaatgtgtgt--------------atacat-----tgtgtgtatg------------------------------cagatct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29484750 818 - 170955103 AGCGTATTTTATTTCCCTTTATGGACAGCTCTAGGCTCCTTTTCCTACTTCCCTGTTTCTAAAAGATATCTACTATAAATTTCTGAAAAAATTATA-TTTTTCCCTTTGAcatctaaaactttccaatatgatgtgaaattattcttcaaagtagttttagccatttacactcttaccaaccttgtatacgagctctcagagctttacatacttacccaacgaggtactactactctaaggatactgacagatagagcacactctacttttaatttgctttttctaccttattagacatttttgtttatgtgtttactaggcatttggatttctttgcagacttttgctcattttcattttggtcattttctttttcttatttttaagggaattatgtgtctctttagaatactaaactgtgccacttaatagaagtggcagatacctctttcccttctgtagcctgaattttcattcattctgtggtttcctttgatgtaaagatgctctaattttatattgtggaattattaaaataagtc-ttctctttatgctaaagtcttttttagttcttctgttaaggaatgttttccattcccaaggacataaagataatgactttataggtactttaaaaag---ttttaaagttttaactttaatatttcaatctttaatccacctgaaactcatttttagatatacttatagtgagaaatatttcaatgtatttatttttcttttcttaatgtggaaaaccaattgccccagtgccatttactgacttgcaatgtgtgt--------------atacat-----tgtgtgtatg------------------------------cagatct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2471322 818 -   2996164 AGCGTATTTTATTTCCCTTTATGGATAGCTCTAGGCTCCTTTTCCTACTTCCCTGTTTCTAAAAGATATCTACTATAAATTTCTGAAAAAATTATA-TTTTTCCCTTTGACatctaaaactttccaatatgatgtgaaattattcttcaaagtagttttagccatttacactcttaccaaccttgtatacgagctctcagagctttacatacttacccaacgaggtactactactctaaggatactgacagatagagcacactctacttttaatttgctttttctatcttattagacatttttgtttatgtgtttactaggcatttggatttctttgcagacttttgctcattttcattttggtcattttctttttcttatttttaagggaattatgtgtctctttagaatactaaactgtgccacttaatagaagtggcagatacctctttcccttctgtagcctgaattttcattcattctgtggtttcctttgatgtcaagatgctctaattttatattgtggaattattaaaataagtc-ttctcttgatgctaaagtcttttttagttcttctgttaagaaatgttttccattcccaaggacataaagataatgactttataggtactttaaaaag---ttttaaagttttaactttaatatttcaatctttaatccacctgaaactcatttttagatatacttatagtgagaaatatttcaatgtatttatttttcttttcttaatgtggaaaaccaattgccccagtgccatttactgacttgcaatgtgtgt--------------atacat-----tgtgtgtatg------------------------------cagatct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      236100 815 +    766320 AGCGTATTTTATTTCCCTTTATGGACAGCTCCAGGCTCCTTTTCCTACTTCCCTGTTTCTAAAAGATATCTACTATAAATTTCTGAAAAAATTATA-TTTTTCCCTTTGACatctaaaactttccaatatgatgtgaaattattcttcaaagtagttttagcaatttacactcttaccaaccttgtatacgagctctcagagctttacatacttacccaacgagg---tactactcgaaggatactgacagatatagcacactctacttttaatttgctttttctattttattagacatttttgtttatgtgtttactaggcatttggatttctttgcaggcttttgctcattttcattttggtcattttctttttcttatttttaagggaattatgtgtctctttagaatactaaactgtgccacttaatagaagtggcagatatctctttcccttctgtagcctgaattttcatttattctgtggtttcctttgatgtaaagatgctctaattttatattgtggaattattaaaataagtc-ttctctttatgctaaagtcttttgtagttcttctgttaaggaatgttttccattcccaaggacataaagataatgactttataggtattttaaaaag---ttttaaagttttaactttaatatttcaatctttaatccacctgaaactcatttttagatatacttatagtgagaaatatttcaatgtatttatttttcttttcttaatgtggaaacccaattgccccagtgccatttactgacttgcaatgtgtgt--------------atacat-----tgtgtgtatg------------------------------cagatct
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1      220258 815 -    352859 AGCGTATTTTATTTCCCTTTATGGACAGCTCTAGGCTCCTTTTCCTACTTCCCTGTTTCTAAAAGATATCTACTATAAATTTCTGAAAAAATTATA-TTTTTCCCTTTGACatctaaaactttccaatatgatgtgaaattattcttcaaagtagttttagcaatttacactcttaccaaccttgtatacgagctctcagagctttacatacttacccaacgagg---tactactcgaaggatactgacagatatagcacactctacttttaatttgctttttctattttattagacatttttgtttatgtgtttactaggcatttggatttctttgcagacttttgctcattttcattttggtcattttctttttcttatttttaagggaattatgtgtctctttagaatactaaattgtgccacttaatagaagtggcagatatctctttcccttctgtagcctgaattttcatttattctgtggtttcctttgatgtaaagatgctctaattttatattgtggaattattaaaataagtc-ttctctttatgctaaagtcttttgtagttcttctgttaaggaatgttttccattcccaaggacataaagataatgactttataggtactttaaaaag---ttttaaagttttaactttaatatttcaatctttaatccacctgaaactcatttttagatatACTTATAGTGAGAAATATTTCAATGtatttatttttcttttcttaatatggaaaaccaattgccccagtgccatttactgaCTTGCAATGTGTGT--------------ATACAT-----TGtgtgtatg------------------------------cagatct
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2378338 813 -   3067355 AGTGTATTTTATTTCCCTTTATGCACAGCTCTAGGCTCCTTTTCCTACTTCCCTGTTTCTAAAAGGTATCTACTATAAATTTCTGAAAAAATTATA-TTTTTCCCTTTGAcatctaaaacttcccaatatgatgtgaaattattcttcaaagtagttttagcaatttacactcttaccaaccttgtatatgagctctcagagctttacatacttacccaacgagg---tactaccctaaggatactgacagatatagcacactctacttttcatttgctttttctatcttattagacatttttgtttatgtgtttactaggcatttggatttctttgcagacttttgctcattttcattttggtcattttctttttcttatttttaagggaattatgtgtctctttagaatactaaactgtgccacttaataaaagtggcagatatctctttcccttctgtagcctgaattttcattcgttctgtggtttcctttgttgtagagatgctctaattttatattgtggaattattaaaataagtctttcactttatgctaaagtcttttttagttcttttgttaaggaatgttttccattcccaaggacataaagatagtgactttataggtactttaaaaag---ttttaaagttttgactttaatatttcaatctttaatccacctgaaactcatttttagatatacgtatagtgagaaatatttcaatgtatttatttttcttttcttaatgtggaaaaccaattgccccagtgccatttactgacttgcaatgtgtgt--------------ata--------tacatatatg------------------------------cagatct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr6             126601897 835 - 158406734 AGTGTATTTTATTTCTCTTTATGCACAGCTCTAGGCTCCTTTTCCTAATTTCCTATTTCTAAAAGGTATCCACTCTAAATTCCTCAAAAGATCATATTTTTTCCCCTTCACATCTAAAGCTTCTCAAT---Atgtgaaattattcttggaagtagttttagcaatttatacccttaccaaccttgtatacaagctcttagagctttacatacttacccaatgagg---tgctactctagtgatactaacatatatagcacactctacttttaatttgctttttctatttcattagacatttttgtttatgtatttactaggcatttggatttgtttgcagacttttgcttattttcatttgggtcatttttt---cccaatttttaagggaattatgtgtctctttagaatattaaactgtgccacttactagaagtggcagatacctctttcccttc-gtagcctgatttttcattcattctgtgggttccttttatgtatagatgttctaattttagattgtggaattattaaaataagtctttctttttatgctaaagtcttttttagttcttttgttaaggaatgttttccattttcaaggacataaatataatcactttataggtactttaaaaagtttttttaaagatttgacttaaatatttcaatctttaattcacttgaaactcatttttagatatagtcatagtgagaaataacttaatctatttatttttcttttcttaatgtggaaaa-caattgccccactgccatttactgaCTTGTAACATGT-TATGTGTAT-tacacacacatatatatgcatatata------------------------cccacatgtatct
i calJac3.chr6             M 247 I 1306
s cebCap1.NW_016107522v1      219677 825 +   3820305 AGTGTATTTTATT--TCTTTATGCACAGCTCTAGCCTCCTTTTCCCACTTTCCTATTTCTAAAAGGTATCCACTCTAAATTCATCAAAAGATCATA-TTTTTCCCCTTCACATCTAAAGCTTCTCAATATAATGTGAAATTATTCTTCGAAGTAGTTTTAGCAATTTATACCCTTACCAACCTTGTACACAAGCTCTCAGAGCTTTACATACTTACCCAATGAGG---TACCACTCTAATGATACTAACGTACATAGCACACTCTACTTTTAATTTGCTTTATCTACTTTATTAGACATTTTTGtttacgtatttactaggcatttggatttgtttgcagacttttgcttattttcatttgggtgaattttt----ctgatttttaagggaattatgcgtctctttagaatattaaactgtgtcacttactggaagcggcagatgcctccttcccttc-gtagcctgatttttcactcattctgtggtttcctttc--------atgctctaatttta-attgtggaattattaaaataagtctttctctttatgctaaagtcttttttagttcttttgttaaggaatgttttccattttcaaggacataaatataatcactttataggtactttaaaaag---ttttaaagatttgacttaaatatttcaatctttaattcacttgaaactcacttttagatatactcatagtgagaaataatttaatctatttatttttcctttcttaatgtggaaaaccaattgccccagtgccatttactgacttgtaatatgtgtgtgtgtgtatacacacacatacatatgcatatata------------------------cacgcatatatct
i cebCap1.NW_016107522v1   C 0 I 58
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I
e chlSab2.chr17             28747677 870 -  71996105 I

a score=185938.000000
s hg38.chr6_GL000254v2_alt    583798 43 +   4827813 ctttggtgtcctctctttttgtccactcatctacctgtctgtt
s panTro5.chr6              29556153 43 + 175400573 ctttggtgtcctctctttttgtccactcatctacctgtctgtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29794398 43 + 173848474 ctttggtgtcctctctttttgtccactcatctacctgtctgtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5597232 42 +   6154872 ctttggtgtcctctctttttgtccactcatctacctgtc-gtt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29823243 43 + 172585720 cttcggtgccctctctttttgtccactcatctacctgtctgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29485568 43 - 170955103 cttcggtgccctctctttttgtccactcatctacctgtctgtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2472140 43 -   2996164 cttcggtgccctctctttttgtccactcatctacctgtctgtt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      236915 43 +    766320 cttcggtgccctctctttttgtccactcatctacctgtctgtt
i cerAty1.NW_012002711v1   C 0 I 5
s manLeu1.NW_012099655v1      221073 43 -    352859 cttcggtgccctctctttttgtccactcatctacctgtctgtt
i manLeu1.NW_012099655v1   C 0 I 5
s colAng1.NW_012115566v1     2379151 43 -   3067355 tttcggtgctctctctttttgtccactcatctacctgtctgtt
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107522v1      220560 35 +   3820305 cttgggtgt----tctttctgtccactcatctgtctgtt----
i cebCap1.NW_016107522v1   I 58 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I
e calJac3.chr6             126602732 1306 - 158406734 I
e chlSab2.chr17             28747677 870 -  71996105 I

a score=29080.000000
s hg38.chr6_GL000254v2_alt    583841 9 +   4827813 cctgtgcta
s panTro5.chr6              29556196 9 + 175400573 cctgtgcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29794441 9 + 173848474 cctgtgcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5597274 9 +   6154872 cctgtgcta
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29823286 9 + 172585720 cctgtgcta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29485611 9 - 170955103 cctgtgcta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2472183 9 -   2996164 cctgtgcta
i macNem1.NW_012011356v1   C 0 C 0
s colAng1.NW_012115566v1     2379194 9 -   3067355 cctgtgctg
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107522v1      220595 9 +   3820305 cctgtgtta
i cebCap1.NW_016107522v1   C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I
e calJac3.chr6             126602732 1306 - 158406734 I
e manLeu1.NW_012099655v1      221116 5 -    352859 I
e chlSab2.chr17             28747677 870 -  71996105 I
e cerAty1.NW_012002711v1      236958 5 +    766320 I

a score=981378.000000
s hg38.chr6_GL000254v2_alt    583850 230 +   4827813 acactgtactgtcttatttcctatacattgtaaatcttgctattagaacaaatctctgaattttattcctgttttttttactttttt----------ttgttatcttgcactcttccctctttgcataaatgtgagaattggtgcaataaatttttttataaattaaaagtatcttttaattaaaatttcattgactctatatgttagcaaaaaaataaagttactaaagataactcctc
s panTro5.chr6              29556205 228 + 175400573 acactgtactgtcttatttcctatacattgtaaatcttgctattagaacaaatctctgaattttattcct-tttttttaactttttt----------ttgttatcttgcactcttccctctttgcataaatgtgagaattggtgcaataaatttttttataaattaaaagtatcttttaattaaaatttcattgactctatatgttagcaaaaaaa-aaagttactaaagataactcctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29794450 225 + 173848474 acactgtactgtcttatttcctatacattgtaaatcttgctattagaacaaatctctgaattttattcct---ttttttactttttt----------ttgttatcttgcactcttccctctttgcataaatgtgagaattggtgcaataaatttttttataaattaaaagtatcttttaattaaaatttcattgactctatatgttagcaaaaaa--aaagttactaaagataactcctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5597283 228 +   6154872 acactgtactgtcttatttcctatacattgtaaatcttgctattagaacaaatctctgaattttattcct-gtttttttac-ttttt----------ttgttatcttgcactcttccctctttgcataaatgtgagaattggtgcaataaatttttttataaattaaaagtatcttttaattaaaatttcattgactctatatgttagcaaaaaaataaagttactaaagataactcctc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29823295 237 + 172585720 acattatactgtcttatttcctatacattgtaaatattgctattagaacaaatctctgaattttgttcct-gtttttctgcttttttgttgttgttgttgttatcttgcgctcttcctcctttgcataaatgtgagaatcggtgcaataaa-ttttttataaagtaaaa-tatcttttaattaaaatttcattgactctgtatgtcagcaaaaaaataaagctactaaagataactcctc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29485620 237 - 170955103 acattatactgtcttatttcctatacattgtaaatattgctattagaacaaatctctgaattttgttcct-gtttttctgcttttttgttgttgttgttgttatcttgcgctctttctcctttgcataaatgtgagaatcggtgcaataaa-ttttttataaagtaaaa-tatcttttaattaaaatttcattgactctgtatgtcagcaaaaaaataaagctactaaagataactcctc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2472192 237 -   2996164 acattatactgtcttatttcctatacattgtaaatattgctattagaacaaatctctgaattttgttcct-gtttttctgctttttttttgttgttgttgttatcttgcgctctttctcctttgcataaatgtgagaatcggtgcaataaa-ttttttataaagtaaaa-tatcttttaattaaaatttcattgactctgtatgtcagcaaaaaaataaagctactaaagataactcctc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      236963 233 +    766320 acattatactgtcttatttcctatacattgtaaatattgctattagaacaaatctctgaattttgttcct-gtttttctgcttt----ttgttgttgttgttatcttgcgctcttcctcctttgcataaatgtgagaatcggtgcaataaa-ttttttataaagtaaaa-tatcttttaattaaaatttcattgactctgtatgtcagcaaaaaaataaagctactaaagataactcctc
i cerAty1.NW_012002711v1   I 5 I 533
s manLeu1.NW_012099655v1      221121 236 -    352859 acattatactgtcttatttcctatacattgtaaatattgctattagaacaaatctctgaattttgttcct-gtttttctgcttt-ttgttgttgttgttgttatcttgcgctcttcctcctttgcataaatgtgagaatcggtgcaataaa-ttttttataaagtaaaa-tatcttttaattaaaatttcattgactctgtatgtcagcaaaaaaataaagctactaaagataactcctc
i manLeu1.NW_012099655v1   I 5 I 529
s colAng1.NW_012115566v1     2379203 228 -   3067355 acattatactgtcttatttcctatacattgtaaatcttgctattaaaacaaatctctgaattttgttcct-gtttttctgctttttttttg--------gttatcttgcgctcttcctcctttgcataaatgtgagaatcagtgcaataaa-ttttttataaagtaaaa-tatcttttaattaaaatttcattgactctgtatgtcagc-aaaaaataaagctactcaagataactcctc
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107522v1      220604 228 +   3820305 acactatactatcttatttcctatacattataaatcttgctattagaacaaatctctgaattttgttcct-gttttttcactttttt----------tggttatcttgcact-ttctccctttgcataaataagagaatcagtgcaataattttttttataatttaaaagtatattttaattaaaatgtcattggctctatatgtcagcaaaaaaataaagttactaaagatagttcctc
i cebCap1.NW_016107522v1   C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I
e calJac3.chr6             126602732 1306 - 158406734 I
e chlSab2.chr17             28747677 870 -  71996105 I

a score=842660.000000
s hg38.chr6_GL000254v2_alt    584080 269 +   4827813 aaccattatcaaggtaaatatccatgtttatttagatcttctctaatgtatttcagtaaagttttataatattctgtgtaaagcttttctatgttctattagatttacatctggacattattactttggtagttatcaaaattatgttttccaaactacattttactctttgttgctggtatatagaaatataccaatttgatacctgggccaagggatttgctaaattatctcatttttctaatgttttatctgcagattcttaggga
s panTro5.chr6              29556433 269 + 175400573 gaccactatcaaggtaaatatccatgtttatttagatcttctctaatgtatttcagtaaagctttataatattctgtgtaaagcttttctatgttctattagatttacatctggacattattactttggtagttatcaaaattatattttccaaactacattttactctttgttgctggtatatagaaatataccaatttgatacctgggccaagggatttgctaaattatctcatttttctaatgttttatctgcagattcttaggga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29794675 269 + 173848474 gaccactatcaaggtaaatatccatgtttatttagatcttctctaatgtatttcagtaaagctttataatattctgtgtaaagcttttctatgttctattagatttacatctggacattattactttggtagttatcaaaattatattttccaaactacattttactctttgttgctggtatatagaaatataccaatttgatacctgggccaagggatttgctaaattatctcatttttctaatgttttatctgcagattcttaggga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5597511 269 +   6154872 aaccattatcaaggtaaatatccatgtttatttagatcttctctaatgtatttcagtaaagctttataatattctgtgtaaagcttttctatgttctattagatttacatctggacattattactttggtagttatcaaaattatattttccaaactacattttactctttgttgctggcatatagaaatataccaatttgatacctgggccaagggatttgctaaattatctcatttttctaatgttttatctgcagattcttaggga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29823532 265 + 172585720 aaccattattaaggtaaatatccatgtttacttagatcttctctaatgtatttcagtaaagttgtataatattctgtgtaaagcctttccatgttctattagatttacatctggacattattactttggtagtcatcaaaattatattttccaaactacattttactctttgttgctggtagatagaaata----aatttgatacctgggccaagggatttgctaaattatctcatttttctaatgttttatctgcagatttttaggga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29485857 265 - 170955103 aaccattattaaggtaaatatccatgtttacttagatcttctctaatgtatttcagtaaagttgtataatattctgtgtaaagcctttccatgttctattagatttacatctggacattattactttggtagtcatcaaaattatattttccaaactacattttactctttgttgctggtagatagaaata----aatttgatacctgggccaagggatttgctaaattatctcatttttctaatgttttatctgcagatttttaggga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2472429 265 -   2996164 aaccattattaaggtaaatatccatgtttacttagatcttctctaatgtatttcagtaaagttgtataatattctgtgtaaagcctttccatgttctattagatttacatctggacattattactttggtagtcatcaaaattatattttccaaactacattttactctttgttgctggtagatagaaata----aatttgatacctgggccaagggatttgctaaattatctcatttttctaatgttttatctgcagatttttaggga
i macNem1.NW_012011356v1   C 0 C 0
s colAng1.NW_012115566v1     2379431 265 -   3067355 aaccattatcaaggtaaatatccatgtttacttagatcttctctaatgtatttcagtaaagttttataatattctgtgtaaagcttttccatgttctattagatttacatatggacattattactttggtagttatcaaaattatattttccaaactacattttactctttgttgctggtagatagaaata----aatttgatacctgggccaagggatttgctaaattatctcatttttctaatgttttatctgcagattcttaggga
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107522v1      220832 265 +   3820305 aaccattatcaaagtaaatgtccatatttatttagaccttctctaatgtatttcagtaaagttttataatattctgtataaagattttctatgttctattagatttatatctggacattgttattttggtagttatcaaaattatattttccaaactacattttactctttgttgctggtatatagaaata----aatttgatacctgggccaagggatttgctaaattatctcatttttctaatgttttatctgcagattcttaggga
i cebCap1.NW_016107522v1   C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I
e calJac3.chr6             126602732 1306 - 158406734 I
e manLeu1.NW_012099655v1      221357 529 -    352859 I
e chlSab2.chr17             28747677 870 -  71996105 I
e cerAty1.NW_012002711v1      237196 533 +    766320 I

a score=6825.000000
s hg38.chr6_GL000254v2_alt    584349 5 +   4827813 ttttt
s panTro5.chr6              29556702 5 + 175400573 ttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29794944 5 + 173848474 ttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5597780 5 +   6154872 ttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29486122 5 - 170955103 ttttt
i macFas5.chr4             C 0 C 0
s cebCap1.NW_016107522v1      221097 5 +   3820305 ttttt
i cebCap1.NW_016107522v1   C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I
e calJac3.chr6             126602732 1306 - 158406734 I
e colAng1.NW_012115566v1     2379696 0 -   3067355 C
e manLeu1.NW_012099655v1      221357 529 -    352859 I
e chlSab2.chr17             28747677 870 -  71996105 I
e cerAty1.NW_012002711v1      237196 533 +    766320 I
e macNem1.NW_012011356v1     2472694 0 -   2996164 C
e rheMac8.chr4              29823797 0 + 172585720 C

a score=910.000000
s hg38.chr6_GL000254v2_alt    584354 1 +   4827813 t
s panTro5.chr6              29556707 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29794949 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5597785 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29486127 1 - 170955103 t
i macFas5.chr4             C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I
e cebCap1.NW_016107522v1      221102 0 +   3820305 C
e calJac3.chr6             126602732 1306 - 158406734 I
e colAng1.NW_012115566v1     2379696 0 -   3067355 C
e manLeu1.NW_012099655v1      221357 529 -    352859 I
e chlSab2.chr17             28747677 870 -  71996105 I
e cerAty1.NW_012002711v1      237196 533 +    766320 I
e macNem1.NW_012011356v1     2472694 0 -   2996164 C
e rheMac8.chr4              29823797 0 + 172585720 C

a score=154148.000000
s hg38.chr6_GL000254v2_alt    584355 292 +   4827813 ttttttt----cttgagacggagtctcgctctgtggcccaggctggagtgcagtggcgcgatctcagctcactgcaagctccacgtcccgggttcacgccattctcctgcctcagcctccggagtagctgggaccacaggcgcctgccaccacgcccggctaatttttttgtatttttagtagagacgaggtttcactgtgttagccaggatggtctcgatctcctgacctcgtaatccacccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgcgcccggcc
s panTro5.chr6              29556708 294 + 175400573 tttttttttttcttgagacggagtcttgctctgtggcccaggctggagtgcagtggcatgatctcagctcactgcaagctccgcgtcccggattcacgccattctcctgcctcagcctctggagtagctgggaccacaggcgcctgccaccacgcccggctaatttttttgtatttttagtagagacgaggtttca--gtgttagccaggatggtctcgatctcctgacctcgtaatccacccgcctcggccttccaaaatgctgggattacaggcgtgagccactgcgcccggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29794950 290 + 173848474 ttttttt----cttgagacggagtcttgctctgtggcccaggctggagtgcagtggcgtgatctcagctcactgcaagctccgcgtcccggattcacgccattctcctgcctcagcctctggagtagctgggaccacaggcgcctgccaccacgcccggctaatttttttgtatttttagtagagacgaggtttca--ctgttagccaggatggtctcgatctcctgacctcgtaatccacccgcctcggccttccaaaatgctgggattacaggcgtgagccactgcgcccggcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5597786 289 +   6154872 ttttttt----cttgagacggagtctcgctctgtctcccaggctggagtgcagtggcgcgatctcagctcactgcaagcttcgcgtcccgggttcacgccattctcctgcctcagcctctggagtagctgggaccacaggcgcctgccagcacgcccggctaatttttttgtatttttagtagagacgaggtttca--ctgttagccaggatggtctcgatctcctgacctcgtaatccacccgcctcggcctcccaaaatgct-ggattacaggcgtgagacaccacgcccggcc
i gorGor5.CYUI01015250v1   C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I
e cebCap1.NW_016107522v1      221102   0 +   3820305 C
e calJac3.chr6             126602732 1306 - 158406734 I
e colAng1.NW_012115566v1     2379696   0 -   3067355 C
e manLeu1.NW_012099655v1      221357 529 -    352859 I
e chlSab2.chr17             28747677 870 -  71996105 I
e cerAty1.NW_012002711v1      237196 533 +    766320 I
e macNem1.NW_012011356v1     2472694   0 -   2996164 C
e macFas5.chr4              29486128   0 - 170955103 C
e rheMac8.chr4              29823797   0 + 172585720 C

a score=5730.000000
s hg38.chr6_GL000254v2_alt    584647 6 +   4827813 agggat
s panTro5.chr6              29557002 6 + 175400573 agggat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29795240 6 + 173848474 agggat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5598075 6 +   6154872 agggat
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chr6             126604038 6 - 158406734 agggat
i calJac3.chr6             I 1306 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I
e cebCap1.NW_016107522v1      221102 0 +   3820305 C
e colAng1.NW_012115566v1     2379696 0 -   3067355 C
e manLeu1.NW_012099655v1      221357 529 -    352859 I
e chlSab2.chr17             28747677 870 -  71996105 I
e cerAty1.NW_012002711v1      237196 533 +    766320 I
e macNem1.NW_012011356v1     2472694 0 -   2996164 C
e macFas5.chr4              29486128 0 - 170955103 C
e rheMac8.chr4              29823797 0 + 172585720 C

a score=20475.000000
s hg38.chr6_GL000254v2_alt    584653 5 +   4827813 ttttt
s panTro5.chr6              29557008 5 + 175400573 ttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29795246 5 + 173848474 ttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5598081 5 +   6154872 ttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29823797 5 + 172585720 ttttt
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2472694 5 -   2996164 ttttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      237729 5 +    766320 ttttt
i cerAty1.NW_012002711v1   I 533 C 0
s manLeu1.NW_012099655v1      221886 5 -    352859 ttttt
i manLeu1.NW_012099655v1   I 529 C 0
s colAng1.NW_012115566v1     2379696 5 -   3067355 ttttt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr6             126604044 5 - 158406734 ttttt
i calJac3.chr6             C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I
e cebCap1.NW_016107522v1      221102 0 +   3820305 C
e chlSab2.chr17             28747677 870 -  71996105 I
e macFas5.chr4              29486128 0 - 170955103 C

a score=4095.000000
s hg38.chr6_GL000254v2_alt    584658 1 +   4827813 t
s panTro5.chr6              29557013 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29795251 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5598086 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29823802 1 + 172585720 t
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1     2472699 1 -   2996164 t
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      237734 1 +    766320 t
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1      221891 1 -    352859 t
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2379701 1 -   3067355 t
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107522v1      221102 1 +   3820305 t
i cebCap1.NW_016107522v1   C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I
e calJac3.chr6             126604049 0 - 158406734 C
e chlSab2.chr17             28747677 870 -  71996105 I
e macFas5.chr4              29486128 0 - 170955103 C

a score=2309009.000000
s hg38.chr6_GL000254v2_alt    584659 423 +   4827813 aagtagggaaatatagctcctataattaaggaaagtttttaaacttccattctagttcctatgaattttctttatcttaatgcaccagctaaaacaatcaaaacagtgtggaattaaagtgataacaagtggcagtcatgtcttgttcTCACTGAGTACATGTTTTGACCTAGGTTTTAGATGGACAACtgtttcatttatctatttttgtataaggagacatcccaaaacagtgacttcaaacaataactatttaacttatttactttagcagagc-ttggtaaagacagcttgccactgttccaataaagttagtattaggttttacctagaagtctagctagagctgttggctggtcctccatatgg---ttctccatatgacctttccacatggctaggttgggctcctcacaaaatgatggc
s panTro5.chr6              29557014 423 + 175400573 aagtagggaaatatagctcctataattaaggaaagtttttaaacttccattctagttcctattaattttctttatcttaatgaaccagctaaaacaatcaaaacagtgtggaattaaagtgataacaagtggcagtcatgtcttgttctcactgagtacatgttttgacctaggttttagatggacaactgtttcatttatctatttgtgtataaggagacatcccaaaacagtgacttcaaacaataactatttaacttatttactttagcagagc-ttggtaaagacagcttgccactgttccaataaagttagtattaggttttacctagaagtctagctagagctgttggctggtcctccatatgg---ttctccatatgaccttcctacatggctaggttgggctcctcacaaaatgatggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29795252 423 + 173848474 aagtagggaaatatagctcctataattaaggaaagtttttaaacttccattctagttcctattaattttctttatcttaatgaaccagctaaaacaatcaaaacagtgtggaattaaagtgataacaagtggcagtcatgtcttgttctcactgagtacatgttttgacctaggttttagatggacaactgtttcatttatctatttgtgtataaggagacatcccaaaacagtgacttcaaacaataactatttaacttatttactttagcagagc-ttggtaaagacagcttgccactgttccaataaagttagtattaggttttacctagaagtctagctagagctgttggctggtcctccatatgg---ttctccatatgacctttctacatggctaggttgggctcctcacaaaatgatggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5598087 421 +   6154872 aagtagggaaatatagctcctataattaaggaaagtttttaaacttccattctagttcctataaattttctttatcttaatgcaccagctaaaacaatcaaaac--tgtggaattaaagtgataacaagtggcagtcatgtcttgttctcactgagtacgtgttttgatctaggttttagatggacaactgtttcatttatctatttgtgtataaggagacatcccaaaacagtgacttcaaacaataactgtttaacttatttactttagcagagc-ttggtaaagacagcttgccactgttccaataaagttagtattaggttttacctagaagtctagctagagctgttggctggtcctccatatgg---ttctccatatgacctttctacatggctaggttgggctcctcacaaaatgatggc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29823803 420 + 172585720 aagtagggaaatatagctcctataattaaggaaagtttttaaatttccattctagttcctataaattttctttatcttaatgcaccagctacaacaatcaaaacagtgtggaattaaagtgataacaagtggcagtcacgtcttgttcTCACTGAGTACATGTTTTGACCTAGGTTTTAGGTGGACAACtgttccacttatctagttttacataaggagacatcccaaaacagtgacttcaaacaataactatttaacttacttactttagcagagc-ttggtaaagacagcttgccactgttccaATAAAATTCGTATTAGGTTTTGCC---GAGTCcagctagagatgttggctggtcctccatatgg---ctctccatatgatctttctacatggctaggttgggctcctcaaaaaatgatggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29486128 420 - 170955103 aagtagggaaatatagctcctataattaaggaaagtttttaaatttccattctagttcctataaattttctttatcttaatgcaccagctacaacaatcaaaacagtgtggaattaaagtgataacaagtggcagtcacgtcttgttcTCACTGAGTACATGTTTTGACCTAGGTTTTAGGTGGACAACtgttccacttatctagttttacataaggagacatcccaaaacagtgacttcaaacaataactatttaacttacttactttagcagagc-ttggtaaagacagcttgccactgttccaATAAAATTCGTATTAGGTTTTGCC---GAGTCcagctagagatgttggctggtcctccatatgg---ctctccatatgatctttctacatggctaggttgggctcctcaaaaaatgatggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2472700 420 -   2996164 aagtagggaaatatagctcctataattaaggaaagtttttaaatttccattctagttcctataaattttctttatcttaatgcaccagctacaacaatcaaaacagtgtggaattaaagtgataacaagtggcagttacgtcttgttcTCACTGAGTACATGTTTTGACCTAGGTTTTAGGTGGACAACtgttccacttatctagttttacataaggagacatcccaaaacagtgatttcaaacaataactatttaacttacttactttagcagagc-ttggtaaagacagcttgccactgttccaATAAAATTCGTATTAGGTTTTGCC---GAGTCcagctagagatgttggctggtcctccatatgg---ctctccatatgatctttctacatggctaggttgggctcctcaaaaaatgatggc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      237735 420 +    766320 aagtagggaaatatagctcctataattaaggaaagtttttacatttccattctagttcctataaattttctttatcttaatgcaccagctacaagattcaaaacagtgtggaattaaagtgataacaagtggcagtcacgtcttgttcTCACTGAGTACATGTTTTGACCTAGGTTTTAGGTGGACAACtgttccacttatctagttttacataaggagacatcccaaaacagtgacttcaaacaataactatttaacttacttactttagcagagc-ttggtaaagacagcttgccactgttccaATAAAATTCGTATTAGGTTTTGCC---GAGTCcagctagagatgttggctggtcctccatatgg---ctctccatatgatctttctacatggctaggttgggctcctcaaaaaatgatggc
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1      221892 420 -    352859 aagtagggaaatatagctcctataattaaggaaagtttttaaatttccattctagttcctataaattttctttatcttaatgcaccagctacaagattcaaaacagtgtggaattaaagtgataacaagtggcagtcacgtcttgttcTCACTGAGTACATGTTTTGACCTAGGTTTTAGGTGGACAACtgttccacttatctagttttacataaggagacatcccaaaacagtgacttcaaacaacaactatttaacttacttactttagcagagc-ttggtaaagacagcttgccactgttccaATAAAATTCGTATTAGGTTTTGCC---AAGTCcagctagagatgttggctggtcctccatatgg---ctctccatatgatctttctacatggctaggttgggctcctcaaaaaatgatggc
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2379702 420 -   3067355 aagtagggaaatatagctcctgtaattaaggaaagttttaaaatttccgttctagttcctataaattttctttatcttaatgcaccagctacaacaatcaaaacagtgtggaattaaagtgataacaagtggcagtcatgtcttgttcTCACTGAGTACATGTTTTGACCTAGGTGTTAGGTGGACAAGTGTTTCACTAATCTAGTTTTACATAAGGAGACATCCCAAAACAGTGACTTCAATCAGTAACTATTTAACTTATTTACTTTAGCAGAGC-TTGGTAAAGGCAGCTTGCCACTGTTCCAGTAAAATTAGTATTAGGTTTTGCC---GAGTCCAGCTAGagatgttgcctggtcctccatatgg---ttctcgatatgacctttctacatggctaggttgggctcctcaaaaaatgatggc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr6             126604049 416 - 158406734 aagtaggcaaatatagctcctataattaaggaaagttttaaaatttccattccagtttctataaattttctttatcttaatgcaccagctaaaataatc-aaacagtgtggaatgagagtgataacaagtggcagtcatgtcttgctcTCACTGAGTACATGTTTTGACCTAGGTTTCAGGTGGACAACtgtttcatttgtctatttttgcataaggagacaccccaaaacagtgactccaaacaa---------aacttatttattttagcagagc-tcgttagaggcagcttgcctctgttccaataaaattagtattaggttttgcctaagaatccaggtagagctgttggctggtcctccatagggttcttctccatatgacctttctacatggctaggttgggcttctcacagaatggtggc
i calJac3.chr6             C 0 C 0
s cebCap1.NW_016107522v1      221103 424 +   3820305 aagtaggcaaatatagctcctataattaaggaaagttttaaaatttccattccagtttctataaattttctttatcttaatgcaccagctaaaacaatc--aacagtgtgggatgagagtgataacaggtggcagtcctgtcttgttctcaccgagtacatgttttgacctaggtttcaggtggacaactgtttcacttgtctatttttgtataaggagacaccccaaaacagtgactccaaacaa-aactgtttaacttatttattttagcagagctttgttagaggcagctttcctctgttccaataaaattagtattaggttttgcctaagaatccaggtagagctgttggctggtcctccatagggttcttctccatatgacctttctacatggctaggttgggcttctcacagaatggtggc
i cebCap1.NW_016107522v1   C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1968719 1928 -   2232465 I
e chlSab2.chr17             28747677 870 -  71996105 I

a score=2763802.000000
s hg38.chr6_GL000254v2_alt    585082 480 +   4827813 taggttccaaggataatctgaagaaccggtgtttgaagaatataag-----ccacagg--tacaaccatttatcaagcctctgcttagatctgtcacattggtcaaacttatcacatggccaactgtggagtaagtcattgtgaaacaaacgtgagtactgggggcatggttccttgagcccactaaagtactgatctaccccaGGAGCctttattaaattgacaaagtcccttcttatttcaggtctgctaaacttttcatcataaatatatgctgacttgtatgcaatgtttctttttcctatgtctattaagaccatcatacagttttaattctttTATTCATCATTTATTCATGTGAATTTATTGGAACTCCAACTGAAAATCCAGTAGTGATGAATTAGACAAAGTTTTCATATTCATGAAGTGCAATCTATAGTGGTAGAGAAACCACTAACAAATAAACATGTAAGCATGAACCGGGTTA
s panTro5.chr6              29557437 480 + 175400573 taggttccaaggataatctgaagaacaggtgtttgaagaatataag-----ccacagg--tacaaccatttatcaagcctctgcttagatctgtcacattggtcaaacttatcacatggccaactgtggagtaagtcattgtgaaacaaatgtgagtactgggggcatggttcgttgagcccattaaagtactgatctaccccaggaggctttattaaattgacaaagtgccttcttatttcaggtctgctaaacttttcatcataaatatatgctgacttgtatgcaatgtttctttttcctatatcttttaagaccatcatacagttttaattcttttattcATCATTTATTCATGTGAATTTATTGGAACTCCAACTGAAAATCCAGTAGTGATGAATTAGACAAAGTTTTCGTATTCATGAAGTACAATCTATAGTGGTAGAGAAACCACTAACAAATAAACATGTAAGCATGAACTGGGTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29795675 480 + 173848474 taggttccaaggataatctgaagaacaggtgtttgaagaatataag-----ccacagg--tacaaccatttatcaagcctctgcttagatctgtcacattggtcaaacttatcacatggccaactgtggagtaagtcattgtgaaacaaatgtgagtactgggggcatggttcgttgagcccattaaagtactgatctaccccaggaggctttattaaattgacaaagtcccttcttatttcaggtctgctaaacttttcatcataaatatatgctgacttgtatgcaatgtttctttttcctatatcttttaagaccatcatacagttttaattcttttattcATCACTTATTCATGTGAATTTATTGGAACTCCAACTGAAAATCCAGTAGTGATGAATTAGACAAAGTTTTCATATTCATGAAGTACAATCTATAGTGGTAGAGAAACCACTAACAAATAAACATGTAAGCATGAACTGGGTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5598508 480 +   6154872 taggttccaaggataatctgaagaaaaggtgtttgaagaatataag-----ccacagg--tacaaccatttatcaagcctctgcttagatctgtcacattggtcaaacttatcacatggccaactgtggagtaagtcattgtgaaacaaacgtgaatactgggggcatggttcgttgagcccattaaagtactgatctaccccaggaggctttattaaattgacaaagtcccttcttatttcaggtctgctaaacttttcatcataaatatatgctgacttgtatgcaatgtttctttttcctatatctattaagaccatcatacagttttaattcttttattcATCATTTATTCATGTGAATTTATTGGAACTACAACTGAAAATCCAGTAGTGATGAATTAGACAAAGTTTTCATATTCATGAAGTACAATCTATAGTGGTAGAGAAACCACTAACAAATAAACATGTAAGCATGAACCGGGTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29824223 468 + 172585720 taggttccaaggataatctgaagaacaggtgtttcaagaatataag-----cgacatg--tg-----------caagcctctacttagat-tgtcacattggtcaaacttatcacatggccaactgtggagtatgtcattgtgaaacaaatgtgagtgctgggggcatagttcgttgagcccattaaagtgctgatctaccccaGGAGCctttattaaattggcgaagtcccttcttatttcaagtctgctaaacttttcatcataaatatacactgatttgtatgcaatatttctttttcctatatctattaagaccatcatgcagttttaattctttTATACATCATTTATTCAAGTGAATTTACTGGAACTGCAActgaaaatccagaagtgatgatttagacaaagttttcatattcatgaagtacaatctatagtggtagagaaactactgacaaataaacatgtaagcatgaaacgggtta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29486548 468 - 170955103 taggttccaagGATAATTTGAAGAACAGGTGTTTCAAGAATATAAG-----CGACATG--TG-----------CAAGCCTCTACTTAGAT-TGTCACATTGGTCAAACTTATCACATGGCCAACTGTGGAGTATGTCATTGTGAAACAAATGTGAGTGCTGCGGGCATAGTTCGTTGAGCCCATTAAAGTGCTGATCTACCCCAGGAgcctttattaaattgacgaagtcccttcttatttcaagtctgctaaacttttcatcataaatatacgctgatttgtatgcaatatttctttttcctatatctattaagaccatcatgcagttttaattcttTTATACATCATTTATTCAAGTGAATTTACTGGAACTGCAActgaaaatccagaagtgatgatttagacaaagttttcatattcatgaagtacaatctatagtggtagagaaactactgacaaataaacatgtaagcatgaaacgggtta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2473120 468 -   2996164 taggttccaaggataatttgaagaacaggtgtttcaagaatataag-----cgacatg--tg-----------caagcctctacttagat-tgtcacattggtcaaacttatcacatggccaactgtggagtatgtcattgtgaaacaaatgtgagtgctgggggcatagttcgttgagcccattaaagtgctgatctaccccaGGAGCctttattaaattgacgaagtcccttcttatttcaagtctgctaaacttttcatcataaatatacgctgatttgtatgcaatatttctttttcctatatctattaagaccatcatgcagttttaattctttTATACATCATTTATTCAAGTGAATTTACTGGAACTGCAActgaaaatccagaagtgatgatttagacaaagttttcatattcatgaagtacaatctatagtggtagagaaactactgacaaataaacatgtaagcatgaaacgggtta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      238155 468 +    766320 taagttccaaggataatctgaagaacaggtgtttcaagaatataag-----tgacatg--tg-----------caagcctctacttagatctgtcacattggtcaaacttatcacatggccagctgtggagtatgtcattgtgaaacaaatgtgagtactgggggcatagttcgttgagcccattaaagtgctgatctaccccaGGAGCctttattaaattgacgaagtcccttcttatttcaagtctgctaaacttttcatcataaatatatactgacttgtatgcaatgtttctttttcctgtatctattaagaccatcatgcagttttaattc-tttaTACATCATTTATTCAAGTGAATTTATTGGAACTCCAActgaaaatccagaagtgatgaattagacaaagttttcatattcgtgaagtacaatctatagtggtagagaaaccactaacaaataaacatgtaaacatgaaacgggtta
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1      222312 468 -    352859 taagttccaaggataatctgaagaacaggtgtttcaagaatataag-----tgacatg--tg-----------caagcctctacttagatctgtcacattggtcaaacttatcacatggccagctgtggagtatgtcattgtgaaacaaatgtgagtactgggggcatagttcgttgagcccattaaagtgctgatctaccccaGGAGCctttattaaattgacgaagtcccttcttatttcaagtctgctaaacttttcatcataaatatatactgacttgtatgcaatgtttctttttcctgtatctattaagaccatcatgcagttttaattc-tttaTACATCATTTATTCAAGTGAATTTATTGGAACTCCAActgaaaatccagaagtgatgaattagacaaagttttcatattcatgaagtacaatctatagtggtagagaaaccactaacaaataaacatgtaaacatgaaacgggtta
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2380122 470 -   3067355 taggttccaaggataatctgaagaacaggtgcttcaagaatataag-----ccacaagaata-----------taagcctctacttagat-tgtcacattggtcaaacttatcacatggccaactgtggagtatgtcattgtgaaacaaatgtgagtactgggggcatagttcattgagcccattaaagtgcagttctaccccaGGAGCctttattaaattgacaaagtcccttcttatttcaagtctgctaaactttttatcataaatatatgctgacttgtatgcaacgtttctttttcctatatctattaagaccatcatgcagttttaattctttTATACATCATTTATTCAAGTGAATTTATTGGAACTCCAACTGAAAATCCAGAAGTGATGAATTAGACAAAGTTTTCATATTCATGAAGTACAATCTATAGTGGTAGAGAAACCACTAACAAATAAACATGTAAGCATAAAAGGGGTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr6             126604465 458 - 158406734 gaggttccaaggataatctgaagaacaggtgtttcaagaacataag-----ccacatg--tgcaagcacttatcaagcctctgcttaaatctgtcacattggtcaaacttatcaaatggccaactgtggagtaagtcattgtgaaacaaatatgagtactgggggcatggttcattgagcccgttaagctactaatctaccccaGGAGCctgtattaaattgaagaagtcccttcctatttcaggtctgctaaacttttcatcataaatatatgtggacttg---------cttctgtttcctatatctattaataccatcacacagttttAA----TTCATTCATCATTTATTCACGTGAATTTATTGGAACCCAAACTGAAAATCCAGAAGTGATTAATTAGACAAAGT-------TTCATGAAGGACAATCTATAGTGGTAGAGAAACCACTAACAAATAACCATGTAAGCATGAACCAGGT--
i calJac3.chr6             C 0 C 0
s cebCap1.NW_016107522v1      221527 469 +   3820305 taggttctaaggataatctgaagaacaggtgtttcaagaacatcag-----ccacatg--tgcaagcacttatcaaggctctgcttaaatctgtcacattggtcaaacttatcaaatggccaactgtggagtaagtcattgtgaaacaaatatgagtattgggggcatggttcattgagcccattaaggtactaatctaccccaggaggctttattaaattgaagaagtcccttcttattttaggtctgctaaacttttcatcataaatatatgtggacttg-----------tttgtttcctatatctattaataccatcatacagttttaattctttcattcATCATTTATTCAGGTGAATTTACTGGAACTCCAActgaaaatccacaagtgacgaattagacaaagtttccatattcctgaaggacaatctatagtggtagagaaaccactaacaaataaccatgtaagtatgaaccaggtta
i cebCap1.NW_016107522v1   C 0 C 0
s otoGar3.GL873742           1970647 459 -   2232465 tatattccacagataaaatgcaccagcagtgtat-gagagtctcagttattccacatt--tg--------catcaa----cagcttgaatatgtcacattagtcaaacttatcaaatggccaaatctagatta----attgtgaaacaagcgtgaacactggaggcatggttcattgagcccactgatacgtcagtctaccCTGGGactctttattgagttaaagaagtcccttcctatttcaaatttgcaaagcttttcatcataagtatatactgatttgcatgtaatgttc---ttttctatatcttctgag---atTACACAGTTTTAATTATTTCATTCATTATTC-TTCAAGTAAATTTACTGGAACTTCAATTGAAAACCCAGAAATGACAGATTATATaaagtcctcatatttatgaagtatagtctgtggtgg--aaaaaaccactaataaataaacatgtaaacatatactatgCTA
i otoGar3.GL873742         I 1928 I 2894
e canFam3.chr35             26144709 15139 +  26524999 I
e chlSab2.chr17             28747677 870 -  71996105 I

a score=673756.000000
s hg38.chr6_GL000254v2_alt    585562 123 +   4827813 GATGGCAACACACATTACAGAGCTAAAGAAAGCAAGGCAAGTGACATAGTGCAGGAAACAAACTATTTCATATTGTAAAGTTTTCACTAATAGCACCACATGTAAAAATAAAGCTTAAATACa
s panTro5.chr6              29557917 123 + 175400573 GATGGCAACACACATTACAGAGGTAAAGAAAGCAAGGCAAGTGACATAGTGCAGGAAACAAACTATTTTATATTGTAAAGTTTTCACTAATAGCACCACATGTAAAAATAAAGCTTAAATACa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29796155 123 + 173848474 GATGGCAACACACATTACAGAGGTAAAGAAAGCAAGGCAAGTGACATAGTGCAGGAAACAAACTATTTTATATTGTAAAGTTTTCACTAATAGCACCACATGTAAAAATAAAGCTTAAATACa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5598988 123 +   6154872 GATGGCAACACACATTACAGAGGTAAAGAAAGCAAGGCAAGTGACATAGTGCAGGAAACAAACTATTTTATATTGTAAAGTTTTCACTAGTAGCACCACATGTAAAAATAAAGCTTAAATACa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29824691 123 + 172585720 gatggcaacacccattacagaggtaaagaaagcaaggcaagtgatgtagtgcaggaaacaaattattttatatagtaaagttttcactaatagcaccgtatataaaaataaagcttaaacaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29487016 123 - 170955103 gatggcaacaaccattacagaggtaaagaaagcaaggcaagtgatgtagtgcaggaaacaaattattttatatagtaaagttttcactaatagcaccgtatataaaaataaagcttaaacaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2473588 123 -   2996164 gatggcaacacccattacagaggtaaagaaagcaaggcaagtgatgtagtgcaggaaacaaattattttatatagtaaagttttcactaatagcaccgtatataaaaataaagcttaaacaca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      238623 123 +    766320 gatggcaacacacattacagaggtaaagaaagcaaggcaagtgacatagtgcgggaaacaaattattttatattgtaaagttttcactaatagcaccatatgtaaaaataaagcttaaacaca
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1      222780 123 -    352859 gatggcaacacacattacagaggtaaagaaagcaaggcaagtgacatagtgcgggaaacaaattattttatattgtaaagttttcactaatagcaccatatgtaaaaataaagcttaaacaca
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2380592 123 -   3067355 GATGGCAACACACATTACAGAGGTAAAGAAAGCAAGGCAAGTGACGTAGTGCAGGAAACAAATTATTTTATATTGTAAAGTTTTCACTAATAGCACCATATGTAAAAATAAAGCTTAAACACa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr6             126604923 120 - 158406734 -ATGGTGACACACATTACAGATGTAAAGAAAGC-AGTTAAGTGACATAGTGCAGGAAACAAATTATTTTATATT-TAAAGTTTTCACTAATAGCACCATATGTAAAAGTAAAGCTTAAACACA
i calJac3.chr6             C 0 C 0
s cebCap1.NW_016107522v1      221996 122 +   3820305 gatggtgacacacattacagacgtaaagaaagc-agttaagtgacatagTGCAGGAAACAAATTATTTTACATTGTAAAGTTTTCACTAATAGCACCATATGTAAAAGTGAAGCTCAAACACA
i cebCap1.NW_016107522v1   C 0 I 41
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1971106 2894 -   2232465 I
e chlSab2.chr17             28747677 870 -  71996105 I

a score=12980.000000
s hg38.chr6_GL000254v2_alt    585685 3 +   4827813 gtt
s panTro5.chr6              29558040 3 + 175400573 gtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29796278 3 + 173848474 gtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5599111 3 +   6154872 gtt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29824814 3 + 172585720 gtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29487139 3 - 170955103 gtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2473711 3 -   2996164 gtt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      238746 3 +    766320 gtt
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1      222903 3 -    352859 gtt
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2380715 3 -   3067355 gtt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr6             126605043 3 - 158406734 ACT
i calJac3.chr6             C 0 I 1022
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1971106 2894 -   2232465 I
e cebCap1.NW_016107522v1      222118 41 +   3820305 I
e chlSab2.chr17             28747677 870 -  71996105 I

a score=11679136.000000
s hg38.chr6_GL000254v2_alt    585688 3106 +   4827813 agctaattgagtatctgaggaaaaacattccaagcagagaaaccaatgcaaagtccagagataggagcattcttagaatgtataattaatagcaaggaagccagtatATTTTTT-AAATTGTTCTTCATCATTACTAAATTATATTCACTATTttttcaaacctattggcataac--gtttcataatttattcttttatcttatcttatttttgtggttacctgaagttacatttcctttcaatccctaatattattaatttgtgcattatcagctattattcttaaaagattttgccagaaatttgaca-tttaatatctttccctctattgttcttaatttcaataactcttgctcttatcgtaacactgtatcatttcttccacttattttgaaatttttccatttgtatttgtaatttttcacattagagacttagctagttaacatttattttttt-cttttttaatgtaagtatttatggctaaaattATCATTAAAATCAGTTTAGCATATTTGTCATAAATTTGGTGATGTTTATATGTGATGTGATTCTTGATACTTGATTCTATGCCATAGTTCTAGttagttatcatagctttgtaagttttgatatccagtggtgtgacttctccaacttggtttttcttcatgtcattgtggcttttggttgcatgcatttagatattaatagaatcattttgtgaatttccataaagccaaaaacctgcttgcattttactgagaatcacaatgaatttaaacataaatttgggaagaattgacttcttagcaatattgaaacttccactttataaaaatgtaatattccttgatttatttgtctatttaaaatttttttagtaatcgtttgtagttttcaatgtagagattttgccaatatttaattaaatttgttcctaaatattgggaggcttttgatgctactaaaattttatggcctttgtattttatttagtttactatttaattctaatagtttaggtatatttcctttccagatctttatgtacccaaccacatcatctattttcaaattttataccttctttgtcattttcctggctctattgggctactgagaagaaatattgacagtagtcattcttatcttatttcttaacctatagtggaaatttaaagtatttcatcaagtatgatatatactgtagcttttatgtagagtcttttcttcagatcaaacattcccttttcatctgagtatgctcagtaattcagcgattttatctttagtaaatgttaaattttttcaaatgttttgctgtatctattggaatggttaaagttatttttcgtc--------------------tgtgtgtatgtctgtgtgtgtgtgtgt----------ataatgtcttcgtttaattttgttatcaagttgatactggcctcataagacaaattggaagtgtttcttcttccctatttcctggacaattttgtgtaaTAAAAT----tttatctatctatttatttatttatttTTAAACAttttattttgacataatttcaaggttacatagagattatcagaatagaacaaataatactcatatatcctttacccagattcacaaattattaacatttttgccctagttgctttatcatttactcttttaataaacatttttttaaccttttgaacaatgtgtatttcctaagaacagacattctcttgcataactagtaaaatgaccaataataaaaaaataccattcatacaataatattatgtcatccagagtcaatattcaaatttaatccattatccaaatgatatcctatattgattttatttcctagtctaaaattcaactcaggaataaaaatttcacttagtggtcatgtcctttgagggtcttttaatctggattagctcctcagtcttttctcttataacgttggcagcttggagttcctgttattttgtagaatgtcactcagtttgggtctgtctgatatttcctctgattagatctaggtcataaatgtcatataggaaaatagacatgagattgtcttctcagcacattacatcggaaggcacatg---ttgatctgtcccattactggtgatattagctataatcagttggctaagatggttctgccaggtttctccattataaatttacta-ttttccccttagtaatttataagtaatttgtggagaggtactttgacaatacataaatattctttattccccaaactttgacctactcatttaagtattcactgataatttttgcttaaatttttgcttataatttttattataattgtagcaaaatggtgattttctaagtctaccatctctttcacatttattagttgatgtgctacttaaagatattaaatccccttctattaaacaatttttttaatttattttttatttcaataggtttttggggaacagatggtgtttggttacatgaataaggtctttagtggtgatttttgagattttggtaaactcatcacccaagcagtgtacactgtacccaatatgtagtcttttatccctcaccctgctcccaccctttcccctgagtcctcaaaatccattctgtcattcttaggcctttgcatcctcatagcttagctcccacttatgaatgagaacatgtgatgtttggttttccattcctgagttactgcacttagaataatggtctccaattccatctcagttgctgtgaatgccattattttgttccttttaatggctgaatagtactccatggtgtatacgtatacatctcccatatgttctttatccactcattgattgatgggcatttggactggttacatatttttgcagttgcaaattgtgctgctataaacatgtgtgtgcaaggaatctttttcatataatgacttcttttcctctggatagatacctagtagtgggattgctggatcaactggtagttctacctttagttctttaaggaatctccacattgttttccataatggttatac-tagtttacattcccaccaacagtgtaaaagtgttcccttttcaccacatccacgccaacatctattatttttt----gaatttttgattatggccattcttgcaa
s panTro5.chr6              29558043 3116 + 175400573 agctaattgagtatctgaggaaaaacattccaagcagagaaaccaatgcaaagtccagagataggagcattcttagaatgtataattaatagcaaggaagccagtatATTTTTTTAAATTGTTCTTCACCGTTACTAAATTATATTCACTGTTttttcaaacctattggcataac--gtttcataatttattcttttatcttatcttatttttgtggttacctgaagttatgtttcctttcaatccctaatattattaatttgtgcattatcaggtattattcttaaaagattttgccagaaatttgaca-tttaatatctttccCTCTATTGTTCTTAATTTCAATAACTCTTGCTCTTATCGTAACACTGTATCAGTTGTTGCACTTATTTTGAAATTTTTCCATTTGTATTTGTAATTTTTCACATTAGAGACTTAGCTAGTTAACatttattttttt-cttttttaatataagtatttatGGCTAAAATTATCATTAAAATCAGTTTAGCATATTTGTCATAAATTTGGTGATGTTTATATGTGATGTGATTCTTGATACTTGATTCTATGCCATAGTTCTAGttaattatcatagctttgtaagttttgatatccagtggtgtgaattctccaacttggtttttcttcatgtcattgtggcttttggttgcatgcatttagatattaatagaatcattttgtgaatttccataaagccaaaaacctacttgcattttactgagaatcacaatgaatttaaacataaatttgggaagaattgacttcttagcaatattgaaatttccactttataaaaatgtaatattccttgatttatt-gtctatttaaaatttttttagtaatcgtttgtagttttcaatgtagagattttgccaatatttaattaaatttgttcctaaatattgggagccttttgatgctactaaaattttatggcctttgtattttatttagtttactatttaattctaatagtttaggtatatttcctttccaaatctttatgcacccaaccacatcatctattttcaaattttataccttctttatcattttcctggctctattgggctactgagcagaaatatcgacagtagtcattcttatcttatttcttaacctatagtggaaatttaaagtatttcatcaagtatgatatatactgtagcttttatgtagagtcttttcttcagatcaaacattcccttttcatctgagtatgctcagtaattcagcgattttatctttagtaaatgttaaattttttcaaatgttttgctgtatctattggaatggttaaagttatttttcGTC--------------------tgtgtgtttgtctgtgtgtgtgtgtgtgtgtgtgtgtataatgtcttcgtttaattttgttatcaagttgacactggcctcataagacaaattggaagtgtttcttcttccctatttcctggacaattttgtgtaaTAAAAT----tttatctatctatttatttatttatttatAAACAttttattttgacataatttcaaggttacatagagattatcagaatagaacaaataatactcatatatcctttacccagattcacaaattattaacatttttgccctagttgctttatcatttactcttttaataaac-tttttttaaccttttgaacaatgtgtatttcctaagaacagacattctcttgcataactagtaaaatgaccaatat--aaaaaataccattcatacaataatattatgtcatccagagccaatattcaaatttaatccattatccaaatgatatcctatattgattttatttcctagtctaaaattcaactcaggaataaaaatttcacttagtggtcatgtcctttgagggtcttttaatctggattagctcctcagtcttttctcttataacgttggcagcttagagttcctgttattttgtagaatgtcactcagtttggatctgtctgatatttcctctgattagatctaggtcataaatgtcatataggaaaacagacatgagattgtcttctcagcacattacgttggaaggcacatgatgttgatctgtcccattactggtgatattagctataatcagttggctaagatggttctgccaggtttctccattataaatttacta-ttttccccttagtaacttataagtaatttgtggagaggtactttgacaatacataaatattctttattccccaaactttgacctactcatttaagtattcactgataatttttgcttaaatttttccttataatttttattataattgtagcaaaatggtgattttctaagtctaccatctctttcacatttattagttgatgttctacttaaagatattaaatcccctgctattaaacaatttttttaatttattttttatttcaataggtttttggggaacagacagtgtttggttacatgaataaagtctttagtggtgatttttgagattttggtaaactcatcacccaagcagtgtacactgtacccaatatgtagtcttttatccctcaccctgctcgcaccctttcccctgagtcctcaaaatccattgtggcattcttaggcctttgcatcctcatagcttagctcccacttatgaatgagaacatgcgatgtttggttttccattcctgagttactgcacttagaataatggcctccaattccatcttggttgctgtgaatgccattattttgttccttttaatggctgaatagtactccatggtgtatatgtatacatttcccacatgttctttatccactcattgattgatgggcatttggactggttacatatttttgcagttgcaaattgtgctgctataaacatgtgtgtgcaaggaatctttttcatataatgacttcttttcctctggatagatacctagtagtgggattgctggatcaactggtagttctacttttagttctttaaggaatctccacattgttttccataatggttgtac-tagtttacattcccaccaacagtgtaaaagtgttctcttttcaccacatccacgccaacatctattatttttt----gaatttttgattatgaccattcttgcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29796281 3118 + 173848474 agctaattgagtatctgaggaaaaacattccaagcagagaaaccaatgcaaagtccagagataggagcattcttagaatgtataattaatagcaaggaagccagtatATTTTTTTAAATTGTTCTTCACCGTTACTAAATTATATTCACTGTTttttcaaacctattggcataac--gtttcataatttattcttttatcttatcttatttttgtggttacctgaagttatgtttcctttcaatccctaatattattaatttgtgcattatcagctattattcttaaaagattttgccagaaatttgaca-tttaatatctttccCTCTATTGTTCTTAATTTCAATAACTCTTGCTCTTATCGTAACACTGTATCAGTTGTTGCACTTATTTTGAAATTTTTCCATTTGTATTTGTAATTTTTCACATTAGAGACTTAGCTAGTTAACatttattttttt-cttttttaatataagtatttatGGCTAAAATTATCATTAAAATCAGTTTAGCATATTTGTCATAAATTTGGTGATGTTTATATGTGATGTGATTCTTGATACTTGATTCTATGCCATAGTTCTAGttaattatcatagctttgtaagttttgatatccagtggtgtgaattctccaacttggtttttcttcatgtcattgtggcttttgattgcatgcatttagatattaatagaatcattttgtgaatttccataaagccaaaaacctacttgcattttactgagaatcacaatgaatttaaacataaatttgggaagaattgacttcttagcaatattgaaatttccactttataaaaatgtaatattccttgatttatttgtctatttaaaatttttttagtaatcgtttgtagttttcaatgtagagattttgccaatatttaattaaatttgttcctaaatattgggagccttttgatgctactaaaattttatggcctttgtattttatttagtttactatttaattctaatagtttaggtatatttcctttccaaatctttatgcacccaaccacatcatctattttcaaattttataccttctttatcattttcctggctctattgggctactgagcagaaatatctacagtagtcattcttatcttatttcttaacctatagtggaaatttaaagtatttcatcaagtatgatatatactgtagcttttatgtagagtcttttcttcagatcaaacattcccttttcatctgagtatgctcagtaattcagcgattttatctttagtaaatgttaaattttttcaaatgttttgctgtatctattggaatggttaaagttatttttcGTC--------------------tgtgtgtttgtctgtgtgtgtgtgtgtgtgtgtgtgtataatgtcttcgtttaattttgttatcaagttgacactggcctcataagacaaattggaagtgtttcttcttccctatttcctggacaattttgtgtaaTAAAAT----tttatctatctatttatttatttatttatAAACAttttattttgacataatttcaaggttacatagagattatcagaatagaacaaataatactcatatatcctttacccagattcacaaattattaacatttttgccctagttgctttatcatttactcttttaataaac-tttttttaaccttttgaacaatgtgtatttcctaagaacagacattctcttgcataactagtaaaatgaccaatat-aaaaaaataccattcatacaataatattatgtcatccagagccaatattcaaatttaatccattatccaaatgatatcctatattgattttatttcctagtctaaaattcaactcaggaataaaaatttcacttagtggtcatgtcctttgagggtcttttaatctggattagctcctcagtcttttctcttataacgttggcagcttagagttcctgttattttgtagaatgtcactcagtttggatctgtctgatatttcctctgattagatctaggtcataaatgtcatataggaaaacagacatgagattgtcttctcagcacattacgttggaaggcacatgatgttgatctgtcccattactggtgatattagctataatcagttggctaagatggttctgccaggtttctccattataaatttacta-ttttccccttagtaacttataagtaatttgtggagaggtactttgacaatacataaatattctttattccccaaactttgacctactcatttaagtattcactgataatttttgcttaaatttttccttataatttttattataattgtagcaaaatggtgattttctaagtctaccatctctttcacatttattagttgatgttctacttaaagaTATTAAATCCCCTGCTATTAAACAATTTTTTAAATTTAttttttatttcaataggtttttggggaacagacagtgtttggttacatgaataaagtctttagtggtgatttttgagattttggtaaactcatcacccaagcagtgtacactgtacccaatatgtagtcttttatccctcaccctgctcccaccctttcccctgagtcctcaaaatccattgtggcattcttaggcctttgcatcctcatagcttagctcccacttatgaatgagaacatgcgatgtttggttttccattcctgagttactgcacttagaataatggcctccaattccatcttggttgctgtgaatgccattattttgttccttttaatggctgaatagtactccatggtgtatatgtatacatttcccacatgttctttatccactcattgattgatgggcatttggactggttacatatttttgcagttgcaaattgtgctgctataaacatgtgtgtgcaaggaatctttttcatataatgacttcttttcctctggatagatacctagtagtgggattgctggatcaactggtagttctacttttagttctttaaggaatctccacattgttttccataatggttgtac-tagtttacattcccaccaacagtgtaaaagtgttctcttttcaccacatccacgccaacatctattatttttt----gaatttttgattatggccattcttgcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5599114 3111 +   6154872 agctaattgagtatctgaggaaaaacattccaagcagagaaaccaatgcaaagtccagagataggagcattcttagaatgtataattaatagcaaggaagccagtatATTTTTTTAAATTGTTCTTCACCATTACTAAATTATATTCACTGTCTTTTCAAACCTATTGGCATAACTTATTTCATAATTTATTCTTTTATCTTATCTTATTTTTGTGGTTTCCTGAAGTTACGTTTCCTTTCAATCCCTAATATTATTAATTTGTGTATTATCAGCTATTATTCTTAAAAGATTTTGCCAGAAATTTGACA-TTTAATATCTTTCCCTCTATTGTCCTTAATTTCAATAACTCTTGCTCTTATCGTAACACTGTATCAGTTATTCCACttattttgaaatttttccatttgtatttttaatttttCACATTAGAGACTTAGCTAGTTAACATTTATTTTTTT-CTTTTTTAATATAAGTATTTCTGGCTAAAATTATCATTAAAATCAGTTTAGCATATTTGTCATAAATTTGGTGATGTTTATATGTGATGTGATTCTTGATACTTGATTCTATGCCATAGTTCTAGttagttatcatagctttgtaagttttgatatccagtggtgtgaattctccagcttggtttttcttcatgtcattgtggcttttggttgcatgcgtttagatattaatagaatcattttgtgaatttccataaagccaaaaacctacctgcattttactgagaatcacaatgaatttaaacataaatttgggaagaattgacttcttagcaatattgaaacttctactttataaaaatgtaatattccttgatttatttgtctatttaaaatttttttagtaatcgtttgtagttttcaatgtagagattttgccaatatttaattaaatttgttcctaaatattgggagccttttgatactactaaaattttatggcctttgtattttatttagtttactatttaattctaatagtttaggtatatttcctttccaaatctttatgtacccaaccacatcatctattttcaaattttataccttctttgtcattttcctggctctattgggctactgagcagaagtatcgacagtagtcattcttatcttatttcttaacctatagtggaaatttaaagtatttcatcaagtatgatatatactgtagcttttatgtagagtcttttct-----tcaaacattcccttttcatctgagtatgctcagtaattcagcgattttatctttagtaaatgttaaattttttcaaatgttttgctgtatctattggaatggttaaagttatttttcgtc--------------------tgtgtgtttgtctgtgtgtgtgtgtgt----gtgtgtataatgtcttcgtttaattttgttatcaagttgacactggcctcataagacaaattggaagtgtttcttcttccctatttcctggacaattttgtgtaaTAAAAT----tttatctatttatttatttatttatttTTAAACAttttattttgacataatttcaaggttacatggagattatcagaatagaacaaataatactcatatatcctttacccagattcacaaattattaacatttttgctctagttgctttatcatttactcttttaataaac-attttttaaccttttgaacaatgtgtatttcctaagaacagacattctcttgcataactagtaaaatgaccaatat-aaaaaaataccattcatacaataatattatgtcatccagagccaatattcaaatttaatccattatccaaatgatatcctatattgattttatttcctagtctaaaattcaactcaggaataaaaatttcacttagtggtcatgtcttttgagggtcttttaatctggattagctcctcagtcttttctcttataacgttggcagcttagagttcctgttattttgtagaatgtcactcagtttgggtctgtctgatatttcctctgattagatctaagtcataaatgtcatataggaaaacagacatgagattgtcttctcagcacattacgttggaaggcacatgatgttgatctgtcccattactggttatattagctataatcagttggctaagatggttctgccaggtttctccattataaatttacta-ttttccccttagtaatttataagtaatttgtggagaggtactttggcaatacataaatattctttattctccaaactttgacctactcatttaagttttcactgataatttttgcttaaatttttccttataatttttactataattgtagcaaaatggtgattttctaagtctaccatctctttcacatttattagttgatgttctacttaaagaTATTAAATCCCCTGCTATTAAACAATTTTTTAAATTTAttttttatttcaataggtttttggggaacagatgatgtttggttacatgaataaggtctttagtggtgatttttgagattttggtaaactcatcacccaagcagtgtacactgtacccaatatgtagtcttttatccctcaccctgctcccaccctttcccctgagtcctcaaaatccattgtggcattcttaggcctttgcatcctcatagcttagctcccacttatgaatgagaacatgcgatgtttggttttccattcctgagttactgcacttagaaaaatggcctccaattccatctcggttgctgtgaatgccattattttgttccttttaatggctgaatagtactccatggtgtatatgtatacatctcccacatgttctttatccactcattgattgatgggcatttggactggttacatatttttgcagttgcaaattgtgctgctataaacatgtgtgtgcaaggaatctttttcatataatgacttcttttcctctggatagatacctagtagtgggattgctggatcaactggtagttctacttttagttctttaaggaatctccacattgttttccataattgttgtac-tagtttacattcccaccaacagtgtaaaagtgttcccttttcaccacatccatgccaacatctattatttttt----gaatttttgattatggccattcttgcaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29824817 3049 + 172585720 agctaattgagtatctgaggaaaaacattccaagcagagaaaccaatgcaaagtccagagatgggagcattcttggaatgtgtaattaacagcaaggaagccagtatATTTTTTTAAATTGTTCTTCACCATTACTAAATTACATTCACTATTTTTTCAAACCTATTGGCATAAC--ATTTCATAATTTATTCTT-----TTATCTTATTTCTGTGGTTACCTGAAGTTACAGTTCCTTTCAATCCC---TAATATTAATTTGTGCATTATCAGCTATTATTCTTAAAAGATTTTGCCAGAAATTTGACATTTTAATATCTTTCCCTCTATTGTTCTTAATTTCAATAACTCTTGCTCTTATTGTAACACCGTATCACTTCTTCCACttattttgaaatttttccatttgtatttgtaatattttacattagagacttagttagttaatatttaatttttt--ctttttaatATAAGTATTTATGGCTAAAATT---ATTAAAATCAGTTTAGCATATTTGTCATAAATTTGGCAATGTTTATATGTGATGTGATTCTTGATACTTGATTCTATGCCACAGTTCTAAttagttattatagctttgtaagttttgatatccagtggtgtgaattctccaacttggtttttcttcatgtcgttgtggcttttggttgcctgcatttagatattaatagaatcatttcgtgaatttccataaagtc-aaaaactgcttgcattttaatgagcatcacaatgaatttaaagataaatttgggaagaattgacttcttagcaatattgaaacttccaattgataaaaatgtaagattctttgatttattcgtctatttaaaatttttttagcaatcatttgtagttttcaatgtagacattttgccagtatttaattaaatttgttcctaaatattgggagccttttgatgctactaaaattttatgggctttgtattttatttagtttactatttaattctagtagtttaggtatatttcctttccaaattattatgtacccaa-aaca----------------tttataccttctttgtcattttcctggctctattgggctactgagcagaaatactgacagtagtcattgttatcttatttcttaacctatagtggaaatttaaagtatttcatcaaatatgatatgtactgtagcttttacgt--agtcttttcattagatcagacattcccttttcatctgagtatgctcagtaattcagtgattttatctttagtagatgttaaattttttcaaatgttttgctggatctattggaat------agttatTTTTCATCtgtgtgtatgtctgtacgtgtgtgtgtatgtctgtgcgtgtgtgtgt----------ataatgtcttcgtttaattttgttatcaagttgatactggcttcataagacaagttggaagtatttcttcttccctatttcctggacaattttgtgtaaTAAAAT--------TTTATTTATTTATTTATTT-----TAAACAttttattttgacataatttcaagtttacttagagattatcagaatagaacaaatgatactcatatgtcctttacccagattcacaaattattaacatttttgccctagttgct---ttatttactcttttaataaat-gttttt-aaccttttgaacaatgtgtatttcctaagaacagacattctcctgcataactagtaaaatgacctatat-aaaaaaataccatttatacagtagtagtatgtcatccagagtcaatattcaaatttaatccattatccaaataacatcctatattgattttatttcctagtttaaaattcaattcaggaataaacatttcactcagcggtcatgtcccttgag-------------ggattaactcctcagtcttttctcttataacgttggcagcttggagtacatgttattctgtagactgtcactcagcttgggtctgtctcatatttcctctgattagattcaggtcacaaatgtcatataggaaaacagacatgagattgtcttctcagcacattacatcagaaggcacatgatgtttatctgtaccattactggtgatattagctataatcagttagttaagatggttctgccaagtttctccaatataaatttacta-ttttccccttagtaatttataagtaatttgtggagaggtactttgacgatacataaatattctttattccccaaactttgacctactcatttaagtattcactgaaaatttttgcttaaat---------caatttttattgtatttgttgcaaaatggtgattttataagtctaccatctcttccacatttattagtcgatgttctacttaaagaTATTAAATCCCCTGCTATTAAATAATTTTTT-AATTTAttttttgtttcaataggtttttggggaacagatggtgtttggctacatgaataaggtctttagtggtgatttctgagattttggtgcactcattacccaagcagtgtacactgtatccaatgtgtagtcttttgtccctcaccctgatcccacccttt-ccctgagttctcaaaatc--------cattcttacgcctttgcatcctcatagcttagctcccacttatgaatgagaacatgtgatgtttggttttccattcctgagttactgcacttagaataatggtctctaattccatcgaggttgctgtgaatgccattattttgttccttttaatggctgaaaagtacttcatggtgtatatgtatacatctcccacatattctttatccactcattgattgatgggcatttggactggttacatatttttgcagttgcaaattgtgctgctataaacatgtgtgtgcaaggaatcttcttcatataatgacttcttttcctctgggaagatacctagtagtgagattgctggatcaactggtagatctacttttagttcgttaaggaattttcacattgttttccataagggttgtacaaagtttacattctcaccaacagtgtaaaagtgttcccttttcaccacatccatgccaacatctattatttttttt--gaatttttgattatggccattcttgcag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29487142 3054 - 170955103 agctaattgagtatctgaggaaaaacattccaagcagagaaaccaatgcaaagtccagagatgggagcattcttggaatgtgtaattaacagcaaggaagccagtatATTTTTTTAAATTGTTCTTCACCATTACTAAATTACAttcactattttttcaaacctattggcataac--gtttcataatttattctt-----ttatcttatttctgtggttacctgaagttacagttcctttcagtccc---taatattaatttgtgcattatcagctattattcttaaaagattttgccagaaatttgacattttaatatctttccctctattgttcttaatttcaataactcttgctcttattgtaacaccgtatcacttcttccacttattttgaaatttttccatttgtatttgtaattttttacattagagac----ttagttaatatttaatttttt--ctttttaatataagtatttatggctaaaatt---ATTAAAATCAGTTTAGCATATTTGTCATAAATTTGGCAATGTTTATATGTGATGTGATTCTTGATACTTGATTCTATGCCACAGTTCTAAttagttattatagctttgtaagttttgatatccagtggtgtgaattctccaacttggtttttcttcatgtcgttgtggcttttggttgcctgcatttagatattaatagaatcatttcgtgaatttccataaagtc-aaaaactgcttgcattttaatgagcatcacaatgaatttaaagataaatttgggaagaattgacttcttagcaatattgaaacttccaattgataaaaatgtaagattctttgatttattcgtctatttaaaattttttttgcaatcatttgtagttttcaatgtagacattttgccaatatttaattaaatttgttcctaaatactgggagccttttgatgctactaaaattttatgggctttgtattttatttAGTTTACTATTTAATTCTAGTAGTTTAGGTATATTTCCTTTCCAAATTATTATGTACCCAA-AACA----------------TTTATACCTTCTTTGTCATTTTCCTGGCTCTATTGGGCTACtgagcagaaatactgacagtagtcattgttatcttatttcttaacctatagtggaaatttaaagtatttcatcaaatatgatatgtactgtagcttttacgtagagtcttttcattagatcagacattcccttttcatctgagtatgctcagtaattcagtgattttatctttagtagatgttaaattttttcaaatgttttgctggatctattggaat------agttatTTTTCATCtgtgtgtatgtctgtgcgtgtgtgtgtatgtctgtgcatgtgtgtgt----------ataatgtcttcgtttaattttgttatcaagttgatactggcttcataagacaagttggaagtgtttcttcttccctatttcctggacaattttgtgtaaTAAAAT----tttatttatttatttatttattt-----TAAACAttttattttgacataatttcaagtttacctagagattatcagaatagaacaaatgatactcatatgtcctttacccagattcacaaattattaacatttttgccctagttgct---ttatttactcttttaataaat-gttttt-aaccttttgaacaatgtgtatttcctaagaacagacattctcctgcataactagtaaaatgacctatat-aaaaaaataccatttatacagtagtagtatgtcatccagagtcaatattcaaatttaatccattatccaaataacatcctatattgattttatttcctagtttaaaattcaattcaggaataaacatttcactcagcggtcatgtcccttgag-------------ggattaactcctcagtcttttctcttataacgttggcagcttggagtacatgttattctgtagactgtcactcagcttgggtctgtctgatatttcctctgattagattcaggtcacaaatgtcatataggaaaacagacatgagattgtcttctcagcacattacatcagaaggcacatgatgtttatctgtaccattactggtgatattagctataatcagttagttaagatggttctgccaagtttctccaatataaatttacta-ttttccccttagtaatttataagtaatttgtggagaggtactttgacgatacataaatattctttattccccaaactttgacctactcatttaagtattcactgaaaatttttgcttaaat---------caatttttattgtatttgttgcaaaatggtgattttataagtctaccatctcttccacatttattagttgatgttctacttaaagaTATTAAATCCCCTGCTATTAAATAATTTTTT-AATTTAttttttgtttcaataggtttttggggaacagatggtgtttggctacatgaataaggtctttagtggtgatttctgagattttggtgcactcattacccaagcagtgtacactgtatccaatgtgtagtcttttgtccctcaccctgatcccaccctttcccctgagttctcaaaatc--------cattcttacgcctttgcatcctcatagcttagctcccacttatgaatgagaacatgtgatgtttggttttccattcctgagttactgcacttagaataatggtctctaattccatcgaggttgctgtgaatgccattattttgttccttttaatggctgaaaagtacttcatggtgtatatgtatacatctcccacatattctttatccactcattgattgatgggcatttggactggttacatatttttgcagttgcaaattgtgctgctataaacatgtgtgtgcaaggaatcttcttcatataatgacttcttttcctctgggaagatacctagtagtgggattgctggatcaactggtagatctacttttagttcgttaaggaattttcacattgttttccataagggttgtacaaagtttacattctcaccaacagtgtaaaagtgttcccttttcaccacatccatgccaacatctattattttttttttgaatttttgattatggccattcttgcag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2473714 3054 -   2996164 agctaattgagtatctgaggaaaaacattccaagcagagaaaccaatgcaaagtccagagatgggagcattcttggaatgtgtaattaacagcaaggaagccagtatATTTTTTTAAATTGTTCTTCACCATTACTAAATTACATTCACTATTttttcaaacctattggcataac--gtttcataatttattctt-----ttatcttatttctgtggttacctgaagttacagttcctttcaatccc---taatattaatttgtgcattatcagctattattcttaaaagattttgccagaaatgtgacattttaatatctttccctctattgttcttaatttcaataactcttgctcttattgtaacaccgtatcacttcttccacttattttgaaatttttccatttgtatttgtaattttttacattagagac----ttagttaatatttaatttttt--ctttttaatataagtatttatggctaaaatt---ATTAAAATCAGTTTAGCATATTTGTCATAAATTTGGCAATGTTTATATGTGATGTGATTCTTGATACTTGATTCTATGCCACAGTTCTAAttagttattatagctttgtaagttttgatatccagtggtgtgaattctccaacttggtttttcttcatgtcgttgtggcttttggttgcctgcatttagatattaatagaatcatttcgtgaatttccataaagtc-aaaaactgcttgcattttaatgagcatcacaatgaatttaaagataaatttgggaagaattgacttcttagcaatattgaaacttccaattgataaaaatgtaagattctttgatttattcgtctatttaaaatttttttagcaatcatttgtagttttcaatgtagacattttgccaatatttaattaaatttgttcctaaatattgggagccttttgatgctactaaaattttatgggctttgtattttatttagtttactatttaattctagtagtttaggtatatttcctttccaaattattatgtacccaa-aaca----------------tttataccttctttgtcattttcctggctctattgggctactgagcagaagtactgacagtagtcattgttatcttatttcttaacctatagtggaaatttaaagtatttcatcaaatatgatatgtactgtagcttttacgtagagtcttttcattagatcagacattcccttttcatctgagtatgctcagtaattcagtgattttatctttagtagatgttaaattttttcaaatgttttgctggatctattggaat------agttatTTTTCATCtgtgtgtatgtctgtgcgtgtgtgtgtatgtctgtgcgtgtgtgtgt----------ataatgtcttcgtttaattttgttatcaagttgatactggcttcataagacaagttggaagtgtttcttcttccctatttcctggacaattttgtgtaaTAAAAT----tttatttatttatttatttattt-----TAAACAttttattttgacataatttcaagtttacctagagattatcagaatagaacaaatgatactcatatgtcctttacccagattcacaaattattaacatttttgccctagttgct---ttatttactcttttaataaat-gttttt-aaccttttgaacaatgtgtatttcctaagaacagacattctcctgcataactagtaaaatgacctatat-aaaaaaataccatttatacagtagtagtatgtcatccagagtcaatattcaaatttaatccattatccaaataacatcctatattgattttatttcctagtttaaaattcaattcaggaataaacatttcactcagcggtcatgtcccttgag-------------ggattaactcctcagtcttttctcttataacgttggcagcttggagtacatgttattctgtagactgtcactcagcttgggtctgtctgatatttcctctgattagattcaggtcacaaatgtcatataggaaaacagacatgagattgtcttctcagcacattacatcagaaggcacatgatgtttatctgtaccattactggtgatattagctataatcagttagttaagatggttctgccaagtttctccaatataaatttacta-ttttccccttagtaatttataagtaatttgtggagaggtactttgatgatacataaatattctttattccccaaactttcacctactcatttaagtattcactgaaaatttttgcttaaat---------caatttttattgtatttgttgcaaaatggtgattttataagtctaccatctcttccacatttattagttgatgttctacttaaagaTATTAAATCCCCTGCTATTAAATAATTTTTT-AATTTAttttttgtttcaataggtttttggggaacagatggtgtttggctacatgaataaggtctttagtggtgatttctgagattttggtgcactcattacccaagcagtgtacactgtatccaatgtgtagtcttttgtccctcaccctgatcccaccctttcccctgagttctcaaaatc--------cattcttacgcctttgcatcctcatagcttagctcccacttatgaatgagaacatgtgatgtttggttttccattcctgagttactgcacttagaataacggtctctaattccatcgaggttgctgtgaatgccattattttgttccttttaatggctgaaaagtacttcatggtgtatatgtatacatctcccacatattctttatccactcattgattgatgggcatttggactggttacatatttttgcagttgcaaattgtgctgctataaacatgtgtgtgcaaggaatcttcttcatataatgacttcttttcctctgggaagatacctagtagtgggattgctggatcaactggtagatctacttttagttcgttaaggaattttcacattgttttccataagggttgtacaaagtttacattctcaccaacagtgtaaaagtgttcccttttcaccacatccatgccaacatctattatttttttttcgaatttttgattatggccattcttgcag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      238749 3085 +    766320 agctaattgagtatctgaggaaaaacattccaagcagagaaaccaatgcaaagtccagagatgggagcattcttgggatgtgtaattaacagcaaggaagccagtatagttTTTTAAATTGTTCTTCACCATTACTAAATTATATTCACTATTttttcaaacctattggcataac--gtttcataatttattcct-----ttatcttatttctgtggctacctgaagttacggttcctttcaatccctattattattaatttgtgcattatcagct-ttattcttcaaagattttgccagaaatttgacattttaatatctttccCTCTATTGTTCTTAATTTCAATAACTCTTGCTCTTATTGTAACACCGTATCACTTCTTCCACttattttgaaatttttccatttgtatttgtaatttttcacattagagacttaactagttaatatttaatttttTTCTTTTTTAATATAAGTGCTTATGGCTACAATT---ATTAAAATCAGTTTAGCATATTTGTCATAAATTTGGCAATGTTTATATGTGATGTGATTCTTGATACTTGATTCTATGCCACAGTTCTAAttagttattatagctttgtaagttttgatatccagtggtgtgaattctccaacttgatttttcttcatgtcattgtggcttttggttgcctgcatttagatattaatagaatcatttcatgaatttccataaagcc-aaaacctgcttgcattttaatgagcctcacaatgaatttaaagataaatttgggaagaattgacttcttagcaatattgaaacttccaattgataaaaatgtaagattccttgatttattcgtctatttaaaatttttttagcaatcatttgtagttttcaatgtagagattttgccaatatttaattaaatttgttcctaaatattgggagcctttcaatgctactaaaattttatggcctttgtattttatttagtttactatttaattccaatagtttaggtatatttcctttccaaattattatgtacccaa-aacatcatctgttttcaaattttataccttctttgtcattttcctgactctattgggctactgagcagaaatactgacagtagtctttgttgtcttatttcttaacctatagtggaaatttaaagtatttcatcaaatatgatatgtactgtagcttttatgtagagtcttttcatcatatcagacattcccttttcatctgagtatgcttagtaattcagtgattttatctttagtagatgttaaattttttcaaatgttttgctggatctattggaatggttaaagttatttttcatc--------------------tgtgtgtatgtctgtgcatgtgtgtgt----------ataatgtcttcacttaattttgttatcaagttgatactggcctcataagacaagttggaagtgtttcttctttcctatttcctggacaattttgtgtaaTAAAAT----tttatttatttatttatttattt-----TAAACAttttattttgacacaatttcaagtttacctagagattatcagactagaacaaatcatagtcatatatcctttacctagattcacaaattattaacatttttgccctagttgctttattatttactcttttaataaac-tttttt-aaccttttgaacaatgtgtatttcctaagaagagacattctcctgcataactagtaaaacgaccaatat-aaaaaaataccatttatacaatagtattatgtcatccagagtcaatattcaaatttaatccattatccaaataatgtcctatattgattttatttcctagtctaaaattcaactcaggaataaacatttcacttagcggtcatgtcccttgagggtcttttaatccggattaactcctcagtcatttctcttataacattggcagcttggagtacatgttattttgtagaatgtcactcagcttgggtctgtctgatatttcctctgattagattcaggtcacaaatgtcatgtaggaaaacagacatgagatcgtcttctcagcacattacatcggaaggaacatgatgtttatctgtaccattactggtgatattagctataatcagttgaataagatggctctgccaagtttctccactataaatttactatttttccccttggtaatttataagtaatttgtggagaggtactttgacgatacataaatattctttattccccaaactttgacctactcatttaagtattcactgaaaatttttgcttaaat---------caatttttattatatttgttgcaaaatggtgactttataagtctaccatctcttccacatttattagttgatgttctactTAAATATATTAAATCCTCTGCTATTAAATAATTTTTT-AATTTAttttttgtttcaataggtttttgggaaacagatagtgtttggctatatgaataaggtctttagtggtgatttctgagattttggtgcactcatcacccaagcagtgtacactgtacccaatgtgtagtcttttgtccctcaccctgatcccaccctttcccctgagttctcaaaatccattgtgtcattcttaggcctttgcatcttcatagcttagctcccacttatgaatgagaacatgcgatgtttggttttccattcctgagttactgcacttagaataatggtctccaattccatctaggttgctgtgaatgccatcattttgctccttttaatgactgaaaagtacttcatggtgtatatgtatacatctcccacatgttctttatccactcattgattgatgggcatttggactggttatatatttttgcagttgcaaattgtgctgctataaacatgtgtgtgcaaggaatctttttcacataatgacttcttttcctctgggaagatacctagtagtgggattgctggatcaactggtagatctacttttagttcgttaaggaatttccacattgctttccataagggttgtacaaagtttacattctcaccaacagtgtaaaagtgttcccttttcaccacatccatgccaacatctattatttttt----gaatttttgattatggccattcttgcag
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1      222906 3085 -    352859 agctaattgagtatctgaggaaaaacattccaagcagagaaaccaatgcaaagtccagagatgggagcattcttgggatgtgtaattaacagcaaggaagccagtatagttTTTTAAATTGTTCTTCACCATTACTAAATTATATTCACTATTttttcaaacctattggcataac--gtttcataatttattcct-----ttatcttatttctgtggttacctgaagttacggttcctttcaatccctattattattaatttgtgcattatcagct-ttattcttaaaagattttgccagaaatttgacattttaatatctttccCTCTATTGTTCTTAATTTCAATAACTCTTGCTCTTATTGTAACACCGTATCACTTCTTCCACttattttgaaatttttccatttgtatttgtaatttttcacattagagacttaactagttaatatttaatttttTTCTTTTTTAATATAAGTGCTTATGGCTACAATT---ATTAAAATCAGTTTAGCATATTTGTCATAAATTTGGCAATGTTTATATGTGATGTGATTCTTGATACTTGATTCTATGCCACAGTTCTAAttagttattatagctttgtaagttttgatatccagtggtgtgaattctccaacttgatttttcttcatgtcattgtggcttttggttgcctgcatttagatattaatagaatcatttcatgaatttccataaagcc-aaaacctgcttgcattttaatgagcctcacaatgaatttaaagataaatttgggaagaactgacttcttagcaatattgaaacttccaattgataaaaatgtaagattccttgatttattcgtctatttaaaatttttttagcaatcatttgtagttttcaatgtagagattttgccaatatttaattaaatttgttcctaaatattgggagcctttcaatgctactaaaattttatggcctttgtattttatttagtttactatttaattccaatagtttaggtatatttcctttccaaattattatgtacccaa-aacatcatctgttttcaaattttataccttctttgtcattttcctgactctattgggctactgagcagaaatactgacagtagtctttgttgtcttatttcttaacctatagtggaaatttaaagtatttcatcaaatatgatatgtactgtagcttttatgtagagtcttttcatcatatcagacattcccttttcatctgagtatgcttagtaattcagtgattttatctttagtagatgttaaattttttcaaatgttttgctggatctattggaatggttaaagttatttttcatc--------------------tgtgtgtatgtctgtgcatgtgtgtgt----------ataatgtcttcacttaattttgttatcaagttgatactggcctcataagacaagttggaagtgtttcttctttcctatttcctggacaattttgtgtaaTAAAAT----tttatttatttatttatttattt-----TAAACAttttatttcgacacaatttcaagtttacctagagactatcagactagaacaaatcatagtcatatatcctttacccagattcacaaattattaacatttttgccctagttgctttattatttactcttttaataaac-tttttt-aaccttttgaacaatgtgtatttcctaagaagagacattctcctgcataactagtaaaatgatcaatat-aaaaaaataccatttatacaatagtattatgtcatccagagtcaatattcaaatttaatccattatccaaataacgtcctatattgattttatttcctagtctaaaattcaactcaggaataaacatttcacttagcggtcatgtcccttgagggtcttttaatccggattaactcctcagtcatttctcttataacattggcagcttggagtacatgttattttgtagaatgtcactcagcttgggtctgtctgatatttcctctgattagattcaggtcacaaatgtcatgtaggaaaacagacatgagatcgtcttctcagcacattacatcggaaggcacatgatgtttatctgtaccattactggtgatattagctataatcagttgactaagatggctctgccaagtttctccactataaatttactatttttccccttggtaatttataagtaatttgtggagaggtactttgacgatacataaatattctttattccccaaactttgacctactcatttaagtattcactgaaaatttttgcttaaat---------caatttttattatatttgttgcaaaattgtgactttataagtctaccatctcttccacatttattagttgatgttctactTAAATATATTAAATCCTCTGCTATTAAATAATTTTTA-AATTTAttttttgtttcaataggtttttgggaaacagatagtgtttggctatatgaataaggtctttagtggtgatttctgagattttggtgcactcatcacccaagcagtgtacactgtacccaatgtgtagtcttttgtcccccaccctgatcccaccctttcccctgagttctcaaaatccattgtgtcattcttaggcctttgcatcttcatagcttagctcccacttatgaatgagaacatgcgatgtttggttttccattcctgagttactgcacttagaataatggtctccaattccatctaggttgctgtgaatgccattattttgctccttttaatggctgaaaagtacttcatggtgtatatgtatacatctcccacatgttctttatccactcattgattgatgggcatttggactggttatatatttttgcagttgcaaattgtgctgctataaacatgtgtgtgcaaggaatctttttcagataaagacttcttttcctctgggaagatacctagtagtgggattgctggatcaactggtagatctacttttagttcgttaaggaatttccacattgctttccataagggttgtacaaagtttacattctcaccaacagtgtaaaagtgttcccttttcaccacatccatgccaacatctattatttttt----gaattttttattatggccattcttgcag
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2380718 3046 -   3067355 agctaattgagtatctgaggaaaaacattccaagcagagaaaccaatgcaaagtccagagatgggagcattcttggaatgtataattaatagcaaggaagccagtatATTTTTTTAAATTGTTCTTCACCGTTACTAAATTATATTCACTATTttttcaaacctattggcataac--gtttcataattgattctt-----ttatcttatttctgtggttatctgaagttacggttcctttcaatccctaatattattaatttgtgcattatcagctattattcttaaaagattttgccagaaatttgacattttaaaatctttccctctattgttcttaatttcaataactcttgctcttattgtaacatcatatcacttcttccacttattttgaaatttttccatttgtatttgtaatttttcacatt--agacttagccagttaatatttaatttttt-cttttttaatataagtatttatggctaaaatt---ATTAAAATCAGTTTAGCATATTTGTCATAAATTTGGCAATGTTTATATGTGATGTGATTCTTGATACTTGATTCTACGCCACAGTTCTAAttagttattatagctttgtaagttttgatatccagtggtttgaattctccaacttggtttttcttcatgtcattgttgcttttggttgcctgcatttagatattaatagaatcattttgtgaatttccataaagcc-aaaacctgcttgcattttaatgagcatcacaatgaatttaaagataaatttgggaagaattgacttcttagcaatattgaaacttccaattgataaaaatgtaagattctttgatttattcgtctatttaaaatttttttagcaatcatttatagttttcaatgtagagattttgccaatatttaattaaatttgttcctaaatattgggagcctttcgatgctactaaaattttagggcctttgtattttatttagtttactatttaattctaatagtttaggtatatttcctttccaaattattatgtacccaa-aaca----------------tttataccttctttgtcattttcctggctctattgggctactgagcagaaatactgacagtagtcattgttatcttatttcttaacctatagtgaaaatttaaagtatttcataaaatatgatatgtactgtagcttttacgtagagtcttttcatcagatcagacattctcttttcatctgagtatgctcagtaattcagtgattttatctttagtagatgttaaattttttcaaatgttttactggatctattggaatagttaAAGTTATCTTTCATC--------------------tgtgtgtatgtctgtgcgtgtgtgtgt----------ataatatcttcatttaattttgttatcaagttgatactggcctcataagacaagttggaagtgtttcttcttccctgtttcctggacaattttgtgtaaTAAAATtttatttatttatttatttatttattt-----TAAACAttttattttgacataatttcaagtttacctagagattaccagaatagaacaaatgatactcatatatcctttacccagattcacaaattattaacatttttgccctagttgctttattatttactcttttaataaac-ttttttaaaccttttgaacaatgtgtatttcctaagaacagacattctcctgcataactagtaaaatgaccaatat-taaaaaataccatttatacagtagtagtatgtcatccagagtcaatattcaaatttaattcattatccaaataacatcctatattaattttatttcctagtctaaaattcaattcaggaataaacatttcacttagcggtcatgtcccttgtg-------------ggattaactcctcagtcttttctcttataatgttggcagcttggagtacatgttattttgtagaatgtcactcagcttgggtctgtctgatatttcctctgattagattcaggtcacaaatgtcatataggaaaatagacatgagattttcttctcagcacattacatcggaaggcacatgatgtttatctgtaccattactggtgatattagctataatcagttagctaagatggctctgccaagtttctccactataaatttacta-ttttccccttagtaatttgtaagtaatttgtggagaggtactttgatgatac----atattctttattccccaaactttgacctactcatttaagtatttactgaaaatttttgcttaaat---------caatttttattatatttgttgcaaaatggtgattttataagtctaccatctcttccacatttattagttgatgttctacttaaagaTATTAAATCCTCTGCTATTAAATAACTTTTT-AATTTAttttttgtttcaataggtttttggggaacagatggtgtttggctacatgaataaggtctttagtggtgatttctgagattttggtgcactcatcacccaagcagtgtacactgtacccagtgtgtagtcttttgtccctcaccctgatcccaccctttcccctgagttctcaaaatc--------cattcttaggcctttgcatcctcatagcttagctcccacttatgaatgagaacatgcaatgtttggttttccattcctgagttactgaacttagaataacggtctccaattccatctaggttgctgtgaatgccattactttgttccttttaatggctgaaaagtacttcatggtgtatatgtatacatctcccacatgttctttatccactcattgattgatgggcatttggactggttacatatttttgcagttacaaattgtgctgctataaacatgtgtgtgcaaggaatcttcttcatataatgacttcttttcctctgggaagatacctagtagcggaattgctggatcaactggtagatctacttttagttcgttaaggaatttccacattgtttcccataagggttgtacaaagtttacattctcaccaacagtgtaaaagtgttcctttttcaccacatccatgccaacatctattatttttt----gaatttttgattatggccattcttgtag
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1971106 2894 -   2232465 I
e cebCap1.NW_016107522v1      222118   41 +   3820305 I
e calJac3.chr6             126605046 1022 - 158406734 I
e chlSab2.chr17             28747677  870 -  71996105 I

a score=3989503.000000
s hg38.chr6_GL000254v2_alt    588794 870 +   4827813 gagtaacgtggtatcacactgtggttttgatttacatttccctgatca-ttagtgatgttgagcatttttccatatgcttgtcggccatttgtatatcttcttttgagagttgtctattcctgtccttagcccaatttttgataggattctttgttttcttcttgctgatttgtttgggttcttcgtagattctggatattagtcctttgtcagatgtatagattgtgaatattttctcccactctgtaagttgtctgttaactctgctgattatttcatttgctgtgcagaagctttttagtcctatctatttatccttgtttttgttgcatttgcttttgggttcttggtcatgaaatcgttgcctaagccaatatctagaagggtttttctgatgtcat------gagtttttatggtttcaggtcttagatttaagtatttgactcattttcagttgatttttg----tataaggtgagagatgatgatccagtttcattctcctatatgtggcttgccaatt-atcccagcaccatttgttgaacagggtgtcctttccccacttcctgtttttctttgctttgtcaaagatcagttggctgttaagtatttggttttatttttgggttatttattctgttccattagtctatgtgcctatttttagaccagtactgtgctgttttggtgactatggccttacagtat---------------------agtttgaag-ttggataatgtgatgcctccagatttgttctgtttgctgagtcttgc-tttgaatatgcaggctctttttaggttccatatcaattttaaaattgtttttctaattctgtgaagaatggtgggggtattttgatgggaattgcattgaatctgtagattgc
s panTro5.chr6              29561159 870 + 175400573 aagtaacgtggtatcacactgtggttttgatttatatttccctgatca-ttagtgatgttgagcatttttccatatgcttgtcggccgtttgtatattttctttttagagttgtctattcctgtccttagcccaatttttgatataattctttgttttcttcttgctgatttgtttgggttcttcgtagattctggatattagtcctttgtcagatgtatagattgtgaatattttctcccactctgtaagttgtctgttaactctgctgattatttcatttgctgtgcagaagctttttagtcctatctatttatccttgtttttgttgcatttgcttttgggttcttggtcatgaaatcgttgcctaagccaatatctagaagggtttttctgatgtcat------gagtttttatggtttcaggttttagatttaagtatttgactcattttcagttgatttttg----tataaggtgagagatgatgatccagtttcattctcctacatgtggcttgccaatttatcccagcaccatttgttgaacagggtgtcctttccccacttcatgtttttctttgctttgtcaaagatcagttggctgt-aagtatttggttttatttttgggttatttattctgttccattagtctatgtgcctatttttagaccagtactgtgctgttttggtgactatggccttacagtat---------------------agtttgaag-ttggataatgtgatgcctccagatttgttctgtttgctgagtcttgc-tttgactatgcaggctctttttaggttccatatcaattttaaaattgtttttctaattctgtgaagaatggtgggggtattttgatgggaattgcattgaatttgtagattgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29799399 870 + 173848474 aagtaatgtggtatcacactctggttttgatttatatttccctgatca-ttagtgatgttgagcatttttccatatgcttgtcggccgtttgtatattttctttttagagttgtctattcctgtccttagcccaatttttgatataattctttgttttcttcttgctgatttgtttgggttcttcgtagattctggatattagtcctttgtcagatgtatagattgtgaatattttctcccactctgtaagttgtctgttaactctgctgattatttcatttgctgtgcagaagctttttagtcctatctatttatccttgtttttgttgcatttgcttttgggttcttggtcatgaaatcattgcctaagccaatatctagaagggtttttctgatgtcat------gagtttttatggtttcaggttttagatttaagtatttgactcattttcagttgatttttg----tataaggtgagagatgatgatccagtttcattctcctacatgtggcttgccaatttatcccagcaccatttgttgaacagggtgtcctttccccacttcatgtttttctttgctttgtcaaagatcagttggctgt-aagtatttggttttatttttgggttatttattctgttccattagtctatgtgcctatttttagaccagtactgtgctgttttggtgactatggccttacagtat---------------------agtttgaag-ttggataatgtgatgcctccagatttgttctgtttgctgagtcttgc-tttgactatgcaggctctttttaggttccatatcaattttaaaattgtttttctaattctgtgaagaatggtgggggtattttgatgggaattgcattgaatttgtagattgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5602225 869 +   6154872 gagtaacgtggtatcacactgtggttttgatttatatttccctgatca-ttagtgatgttgagcatttttccatatacttgtcggccgtttgtatatcttctttttagagttgtctattcctgtccttagcccaatttttgatagaattctttgttttcttcttgctgatttgtttgggttcttcgtagattctggatattagtcctttgtcagatgtatagattgtgaatattttctcccactctgtaagttgtctgttaactctgctgattatttcatttgctgtgcagaagctttttagtcctatctatttatccttgtttttgttgcatttgcttttgggttcttggtcatgaaatcattgcctaagccaatatctagaagggtttttctgatgtcat------gagtttttatggtttcaggtcttagatttaagtatttgactcattttcagttgatttttg----tataaggtgagagatgatgatccagtttcattctcctacatgtggcttgccaatt-atcccagcaccatttgttgaacagagtgtcctttccccacttcatgtttttctttgctttgtcaaagatcagttggctgt-aagtatttggttttatttttgggttatttattctgttccattagtctatgtgcctatttttagaccagtactgtgctgttttggtgactatggccttacagtat---------------------agtttgaag-ttggataatgtgatgcctccagatttgttctgtttgctgagtcttgc-tttgactatgcaggctctttttaggttccatatcaattttaaaattgtttttctaattctgtgaagaatggtgggggtattttgatgggaattgcattgaatttgtagattgc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29827866 875 + 172585720 gagtaacgtcgtatcacactgtggttttgatttacatttccctgatca-ttagggaagttgagcatttttccatatgcttgtcggccatttgtatatcttcttttgagaattgtctatttgtatcctcagcctgctttttgataggattctttgttttcttcttgctgatttttttgggttctttgtaaattctggatattagtcccttgtcagatgtatagattgtgaatattttctcccactctgtaggttgtctgttaactctgctcattattttgtttgctgtgcagaagctttttagtc----ctatttatccttgtttttgttgcatttgcttttgggttcttggtcatgaaatctttgcctaagccaatatctagaaaggtttttccgatgtcatgttctagagtttttatggtttcaggtcttagatttaagtatttgactcattttgagttgatttttgtatatataaggggagagatgagggtccagtttcattctcctacatatggcctgccaatt-atcccagcaccatttgttgagcagagtgtcctttccgcacttcatgtttttctttgttttgtcgaagatcagttggctgt-aagtatttggttttatttttgggttctctattctgttccattagtctatgtgcctatttttataccagtactgtgctgttttggtgactatggccttagagcat---------------------agtttgaag-ttgggtaatgtgatgtttccaaatttgttctgtttgcttggtcttgc-tttgactatgcaggctcttttttggtaccatatcaattttagaattgcttttctaattctgtgaagaatggtaggggtattttgatgggaattgcattgaatttgtagactgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29490196 874 - 170955103 gagtaacgtcgtatcacactgtggttttgatttacatttccctgatca-ttagggaagttgagcatttttccatatgcttgtcggccatttgtatatcttcttttgagaattgtctatttgtatcctcagcctgctttttgataggattctttgttttcttcttgctga-ttttttgggttctttgtaaattctggatattagtcccttgtcagatgtatagattgtgaatattttctcccactctgtaggttgtctgttaactctgctcattattttgtttgctgtgcagaagctttttagtc----ctatttatccttgtttttgttgcatttgcttttgggttcttggtcatgaaatctttgcctaagccaatatctagaaaggtttttccgatgtcatgttctagagtttttatggtttcaggtcttagatttaagtatttgactcattttgagttgatttttgtatatataaggggagagatgagggtccagtttcattctcctacatatggcctgccaatt-atcccagcaccatttgttgagcagagtgtcctttccgcacttcatgtttttctttgttttgttgaagatcagttggctgt-aagtatttggttttatttttgggttctctattctgttccattagtctatgtgcctatttttataccagtactgtgctgttttggtgactatggccttagagcat---------------------agtttgaag-ttgggtaatgtgatgtttccaaatttgttctgtttgcttggtcttgc-tttgactatgcaggctcttttttggtaccatatcaattttagaattgcttttctaattctgtgaagaatggtaggggtattttgatgggaattgcattgaatttgtagattgc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2476768 875 -   2996164 gagtaacgtcgtatcacactgtggttttgatttacatttccctgatca-ttagggaagttgagcatttttccatatgcttgtcggccatttgtatatcttcttttgagaattgtctatttgtatcctcagcctgctttttgataggattctttgttttcttcttgctgatttttttgggttctttgtaaattctggatattagtcccttgtcagatgtatagattgtgaatattttctcccactctgtaggttgtctgttaactctgctcattattttgtttgctgtgcagaagctttttagtc----ctatttatccttgtttttgttgcatttgcttttgggttcttggtcatgaaatctttgcctaagccaatatctagaaaggtttttccgatgtcatgttctagagtttttatggtttcaggtcttagatttaagtatttgactcattttgagttgatttttgtatatataaggggagagatgagggtccagtttcattctcctacatatggcctgccaatt-atcccagcaccatttgttgagcagagtgtcctttccgcacttcatgtttttctttgttttgttgaagatcagttggctgt-aagtatttggttttatttttgggttctctattctgttccattagtctatgtgcctatttttataccagtactgtgctgttttggtgactatggccttagagtat---------------------agtttgaag-ttgggtaatgtgatgtttccaaatttgttctgtttgcttggtcttgc-tttgactatgcaggctcttttttggtaccatatcaattttagaattgcttttctaattctgtgaagaatggtaggggtattttgatgggaattgcattgaatttgtagactgc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      241834 894 +    766320 gagtagcatcatatcacactgtggttttgatttacatttccctgatca-ttagggatgttgggcatttttccatatgcttgtcggccatttgcatatcttcttttgagaattgtctattcatgtccttagcccactttttgataggattctttgtttccttcttgctgatttgtttgggttctttgtagattctggatattagtcccttgtcagatgtatagaatgtgaatattttctcccactctgtaggttgtctgttaactctgctgattatttcgtttgctgtgcagaagctttttagtc----ctatttatccttgtttttgttgcatttgcttttggattcttggtcatgaaatctttgcctaagccaatatctagaaaggtttttctgatgtcatgttctagagtttttatggtttcaggtcttagatttaagtatttgactcattttcagctgatttttg----tataaggtgagagatgagggtccagtttcattctcctacatgtggcctgccaatt-atcccagcaccatttgttgaacagggtgtcctttccccacttcatgtttttctttgctttgtcgaagatcagttggctgt-aagcatttggttttattttggagttctctattctgttccattagtctatgtgcctatttttataccagcactgtgctgttttggtgactatggccttacagtatgaaggccatagtcaccaaaacagcttgaagtttgggtaatgtgatgtttccaaatttgttctgtttgcttggtcttgcttttgactatgcagactcttttttggtaccatatcagttttagaattgtttttctaattctgtgaagaacggtgggggtattttgatgggaattgcattgaatttgtagattgc
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1      225991 894 -    352859 gagtagcatcatatcacactgtggttttgatttacatttccctgatca-ttagggatgttgagcatttttccatatgcttgtcggccattagcatatcttcttttgagaattgtctattcatgtccttagcccgctttttgataggattctttgtttccttcttgctgatttgtttgggttctttgtagattctggatattagtcccttgtcagatgtatagaatgtgaatattttctcccactctgtaggttgtctgttaactctgctgattatttcgtttgctgtgcagaagctttttagtc----ctatttatccttgtttttgttgcatttgcttttggattcttggtcatgaaatctttgcctaagccaatatctagaaaggtttttctgatgtcatgttctagagtttttatggtttcaggtcttagatttaagtatttgactcattttcagttgatttttg----tataaggtgagagatgagggtccagtttcattctcctacatgtggcctgccaatt-atcccagcaccatttgttgagcaggatgtcctttccccacttcatgtttttctttgctttgtcgaagatcagttggctgt-aagcatttggttttattttggagttctctattctgttccattagtctatgtgcctatttttataccagcactgtgctgttttggtgactatggccttacagtatgaaggccatagtcaccaaaacagcttgaagtttgggtaatgtgatgtttccaaatttgttctgtttgcttggccttgcttttgactatgcagactcttttttggtaccatatcagttttagaattgtttttctaattctgtgaagaacggtgggggtattttgatgggaattgcattgaatttgtagattgc
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2383764 871 -   3067355 gagtaatgtcgtatcacactgtggttttgatttacatttccctgatca-ttagggatgttgagcatttttccatatgcttgttggccatttgtatatcttcttttgagaatggtctgttcgtgtcctcagcccactttttgataggattctttgttttcttcttgctgatttgtttgggttctttgtagattctggatattagtcccttgccagatgtatagactgtgaatattttctcccactctgtaggttgtctgttaactctgctgattattttgtttgctgtgcagaagctttttagtc----ctatttatccttgtttttgttgcatttgcttttgggttcttggtcatgaaatctttgcctaagccaatatctagaaaggtttttccgatgtcatgttctagagtttttatggtttcaggtcttagatttaagtatttgactcattttgagttgatttttg----tataaggtgagagatgagggtccagtttcattctcctacatatggcctgccagtt-atcccagcaccatttgttgaacagggtgtcctttccctactttatgtttttctttgctttgtcgaagatcagttggctgt-aagtatttggttttatttttgggttctctattctgttccattagtctatgtgcctatttttataccagtactgtgctgttttggtgactatggccttacagtat---------------------agtttgaag-ttgggtaatgtgatgtttccaaatttgttctgtttgcttggtcttgc-tttgactatgcaggctcttttttggtaccatatcaattttagaactgcttttctaattctgtgaagaatggtaggggtattttgatgggaattgcattgaatttgtagattgc
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107522v1      222159 877 +   3820305 gagtaacatggtatcaccttggggttttgatttacatttccctgattatttagtgatgttgagcatgtttccatatgcttgtcagccatttgtatatcttcttttgagacctgtctattcatgtcctcagcccacattttgacgagattgtttgtcttttttttgctgatttgtttgggttctttgtagattctggatattagtccttcgtcagatgtatagattgtgaagattttctcccactctgtaggttgtctgttaactctgctgattatttcttttgctgtgcagaagatttttagccccatctatttatctttgtttttgttgcatctgcttttgggttcttggtcatgaaatctttgcctaagccaatgtctcgaagggtttttccaatgtcatcttctagagtttttgtggtttcaggtcttaaatttaagtgtttggttcattttgaattgatttttg----tgtaaggtgggagatgaggatccagtttcattcttctacatgtgactagccaatt-atcccagcaccatttgttgaatagggtgtcctttccccacttcatgcttttgttcactttgtcgaagatcagttggttgttaagtatttggttttatttttgggttctttattctgttccattggtctatgtgcctgtttttataccagtactgtgctgttttggtgactatggccttattgtat---------------------ggtttgaag-ttggttaatgtgatgcttccagatatgttctttttgcttggtcttgc-tttggctatgtgggctcttttttggttccatatcaatttgagaattgtttttctaattctgtgaagaatgaaggtggtattttaatgaaaactgcattaaatttgtagatcgc
i cebCap1.NW_016107522v1   I 41 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1971106 2894 -   2232465 I
e calJac3.chr6             126605046 1022 - 158406734 I
e chlSab2.chr17             28747677 870 -  71996105 I

a score=969888.000000
s hg38.chr6_GL000254v2_alt    589664 175 +   4827813 ttttggcagtatggtcattttcaaaatattgattctacccatccat-gagcataggatgtgttcccatttgtttgtcttgtctatgatttctttGTAATAAAATTTTAAACAAAACATTAATGGACATAATATGTAGCACCattaagtgtccatttttgagtcactctgctaagca
s panTro5.chr6              29562029 175 + 175400573 ttttggcagtatggtcattttcaaaatattgattctccccatccat-gagcataggatgtgtttccatttgtttgtcttgtctatgatttctttGTAATAAAATTTTAAATAAAACATTAATGGACATAATATGTAGCACCattaagtgtccatttttgagtcactctgctaagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29800269 175 + 173848474 ttttggcagtatggtcattttcaaaatattgattctccccatccat-gagcataggatgtgtttccatttgtttgtcttgtctatgatttctttGTAATAAAATTTTAAATAAAACATTAATGGACATAATATGTAGCACCattaagtgtccatttttgagtcactctgctaagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5603094 175 +   6154872 ttttggcagtatggtcattttcaaaatattgattctacccatccat-gagcataggatgtgtttccatttgtttgtcttgtctgtgatttctttGTAATAAAATTTTAAATAAAACATTAATGGACATAATATGTAGCACCattaagtgtctatttttgagtcactctgctaagca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29828741 175 + 172585720 ttttggcattatcgtcattttcaaaatattgattctacccatccat-gagcataggatgtgtttccatttgtttgtgttgtctatgatttctttGTAATAAAATTTTAAATAAAACATTAATGGACATAATATGTAGCACCATTAAGTATCTATTTTTGAGTCACTTTGCTaagca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29491070 175 - 170955103 ttttggcagtatcgtcattttcaaaatattgattctacccatccat-gagcataggatgtgtttccatttgtttgtgttgtctatgatttctttGTAATAAAATTTTAAATAAAACATTAATGGACATAATATGTAGCACCattaagtgtctatttttgagtcactttgctaagca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2477643 175 -   2996164 ttttggcagtatcgtcattttcaaaatattgattctacccatccat-gagcataggatgtgtttccatttgtttgtgttgtctatgatttctttGTAATAAAATTTTAAATAAAACATTAATGGACataatatgtagcaccattaagtatctatttttgagtcactttgctaagca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      242728 175 +    766320 ttttgacagtattgtcattttcaaaatattgattctacccatccat-gggcataggatgtgtttccatttgtttgtgttgtctatgatttctttGTAATAAAATTTTAAATAAAACATTAATGGACataatatgtagcatcattaagtgtctatttttgagtcactttgtgaagca
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1      226885 175 -    352859 ttttggcagtattgtcattttcaaaatattgattctacccatccat-gggcataggatgtgtttccatttgtttgtgttgtctatgatttctttGTAATAAAATTTTAAATAAAACATTAATGGACataatatgtagcatcattaagtgtctatttttgagtcactttgtgaagca
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2384635 175 -   3067355 ttttggcagtattgtcattttcaaaatattgattctacccatccat-gagcataggatgtgtttccatttgtttgtgttgtctatgatttctttGTAATAAAATTTTAAATAAAACATTAATGGACATAATATGTAGCACCATTAAGTGTCTATTTTTGAGTCACTTTGCTAAGCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr6             126606068 172 - 158406734 tttgggcagtgtggtcaatttcaaaata-tgattctacccattcatggagcattagatgtgtttca--ttatttgtgtggtctatgatttctttGTAATAAAAATTTAAATAAAACACTAAGGGACATAATATGTAACATCATTAAGGGTCTA-TTTTGAGTCACTCTGCTGAGCA
i calJac3.chr6             I 1022 I 309
s cebCap1.NW_016107522v1      223036 175 +   3820305 ttttggcagtgtagtcattttcaaaatattgattctacccatccat-gagcataggatgtgtttccatttatttgtgttgtccatgatttctttGTAATAAAATTTTAAATAAAACACTAATGGACataatatgtagcatcattaagtgtctatttttgagtcactcttctgagca
i cebCap1.NW_016107522v1   C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1971106 2894 -   2232465 I
e chlSab2.chr17             28747677 870 -  71996105 I

a score=72512.000000
s hg38.chr6_GL000254v2_alt    589839 12 +   4827813 ctttacagaatt
s panTro5.chr6              29562204 12 + 175400573 ctttacagaatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29800444 12 + 173848474 ctttacagaatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5603269 12 +   6154872 ctttacagaatt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29828916 12 + 172585720 ctttacagaatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29491245 12 - 170955103 ctttacagaatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2477818 12 -   2996164 ctttacagaatt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      242903 12 +    766320 ctttacagaatt
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1      227060 12 -    352859 ctttacagaatt
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2384810 12 -   3067355 CTTCACAGAATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr6             126606549 12 - 158406734 CTTTACAGAATT
i calJac3.chr6             I 309 C 0
s cebCap1.NW_016107522v1      223211 12 +   3820305 ctttacagaatt
i cebCap1.NW_016107522v1   C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1971106 2894 -   2232465 I
e chlSab2.chr17             28747677 870 -  71996105 I

a score=1491277.000000
s hg38.chr6_GL000254v2_alt    589851 292 +   4827813 atttattcaatatgctcattttacagatgcagaaagat----taagcgactaaagtcacctcacaaaggataaatggtagcactagaattaaacccaagcaatctgactgtagTTGTTATGTA-CTTATATATGATA-CAGTATGCCTTCTATTATTAAGTATAAAAAATAACAAATGATAAATTCCTCATGTTGGCTAGACTGAGGGAGAACAATACTGGAAGCAATATAATATTTTAC-AATAATTTTAGAGAGGAATTTA--------------TCA-ATATTTAAATGCATACAGTTTTAGAAATAAACT
s panTro5.chr6              29562216 292 + 175400573 atttattcaatatgcttattttacagatgcagaaagat----taagcaactaaagtcacctcacaaaggataaatggtagcactagaattaaacccaagcaatctgactgtagTTGTTATGTA-CTTATATATGATA-CAGTATGCCTTCTATTATTAAGTATAAAAAATAACAAATGATAAATTCCTCATGTTGGCTAGACTGAGGGAGAACAATACTGGAAGCAATATAATATTTTAC-AATAATTTTAGAAAGGAATTTA--------------TCA-ATATTTAAATGCATACAGTTTTAGAAATAAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29800456 292 + 173848474 atttattcaatatgcttattttacagatgcagaaagat----taagcaactaaagtcacctcacaaaggataaatggtagcactagtattaaacccaagcaatctgactgtagTTGTTATGTA-CTTATATATGATA-CAGTATGCCTTCTATTATTAAGTATAAAAAATAACAAATGATAAATTCCTCATGTTGGCTAGACTGAGGGAGAACAATACTGGAAGCAATATAATATTTTAC-AATAATTTTAGAAAGGAATTTA--------------TCA-ATATTTAAATGCATACAGTTTTAGAAATCAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5603281 292 +   6154872 atttattcaatatgctcattttacagatgcagaaagat----taagcgactaaagtcacctcacaaaggataaatggtagcactagaattaaacccaagcaatctgactGTAGTTGTTATGTA-CTTATATATGATA-CAGTATGCCTTCTATTATTAAGTATAAAAAATAACAAATGATAAATTCCTCATGTTGGCTAGACTGAGGGAGAACAATACTGGAAGCAATATAATATTTTCC-AATAATTTTAGAAAGGAATTTA--------------TCA-ATATTTAAATGCATACAGTTTTAGAAATAAACT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29828928 257 + 172585720 atttattcaacatgctcattttacagaggcagaacgat----aaagcgtctaaagttacctcacaaaggagaattggtagcacttagattaaacccaagcaaactgactGTAATTGTTATGTATCTTATATATGATAGCAGTATGCCTTCTATTATTAAGTAT-AAAAATAACAAATGAT---------------------------------AATACTGGAAGCAATATAATATTTTAC-AATAATTT---AGAAGGAATTA--------------TCA-ATATTTAAATGCATACAGTTTTAGAATAAACCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29491257 259 - 170955103 atttattcaaCATGCTCATTTTACAGAGGCAGAACGAT----AAAGCGTCTAAAGTTACCTCACAAAGGATAATTGGTAGCACTAGAATTAAACCCAAGCAAACTGACTGTAATTGTTATGTA-CTTATATATGATA-CAGTATGCCTTCTATTATTAAGTATAAAAAATAACAAATGAT---------------------------------AATACTGGAAGCAATATAATATTTTAC-AATAATTTTAGAAAGGAATTTA--------------TCA-ATATTTAAATGCATACAGTTTTAGAAATAAACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2477830 259 -   2996164 atttattcaacatgctcattttacagaggcagaacgat----aaagcgtctaaagttacctcacaaaggataattggtagcactagaattaaacccaagcaaactgactGTAATTGTTATGTA-CTTATATATGATA-CAGTATGCCTTCTATTATTAAGTATAAAAAATAACAAATGAT---------------------------------AATACTGGAAGCAATATAATATTTTAC-AATAATTTTAGAAAGGAATTTA--------------TCA-ATATTTAAATGCATACAGTTTTAGAAATAAACT
i macNem1.NW_012011356v1   C 0 I 1102
s cerAty1.NW_012002711v1      242915 262 +    766320 attttttcaatatgctcattttacagaggcagaacaat----taagcgactaaagttacctcacaaaggataaatggtagcactagaattaaacccaagGAAATTGACTGTAATTGTTATGTA-CTTATATATGATA-CAGTATGCCTTCTATTATTAAGTATAAAAAATAACAAATGAT------------------------------AACAATACTGGAAGCAATATAATATTTTAC-AATAATTTTAGAAAGGAATTTA--------------TCA-ATATTTAAATGCATACAGTTTTAGAAATAAACT
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1      227072 262 -    352859 attttttcaatatgctcattttacagaggcagaacaat----taagcgactaaagttacctaacaaaggataaatggtagcactagaattaaacccaagGAAATTGACTGTAATTGTTATGTA-CTTATATATGATA-CAGTATGCCTTCTATTATTAAGTATAAAAAATAACAAATGAT------------------------------AACAATACTGGAAGCAATATAATATTTTAC-AATAATTTTAGAAAGGAATTTA--------------TCA-ATATTTAAATGCATACAGTTTTAGAAATAAACT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2384822 259 -   3067355 ATTTATTCAAtatgctcattttacagaggcagaatgat----aaagcgtctaaagttacctcacaaaggataattggtagcactagaattaaacccaagcaaactgactGTAATTGTTATGTA-CTTATATATGATA-CAGTATGCCTTCTATTATTAAGTATAAAAAATAACAAATGAT---------------------------------AATACTGGAAGCAATATAATATTTTAC-AATAATTTTAGAAAGGAATTTA--------------TCA-ATATTTAAATGCATACAGTTTTAGAAATAAACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr6             126606561 281 - 158406734 TTTTAatcaatatgctcattttacaggtgcagaaagat----taagcaactaaagtcacctcacaaacagtaactggtagcactagaattcagtccaagcaatctgactgtagt-----agta-catATATATGATA-CAGTATGCCTTCTATTCTTAAGTCTAAAAAATAACAAATGATAAATTCCTCATGTTGACTAGACTGAGGGAGAACAATACTGAAAGCAATATAATATATTAC-AATACTTTTATAAAGGAATTTA--------------TCA-ATATTTGAATGCATACAGTTTTAGAAA------
i calJac3.chr6             C 0 C 0
s cebCap1.NW_016107522v1      223223 281 +   3820305 atttaatcaatatgctcattttacaggtgcagaaagat----taagcaacgaaagtcacctcacaaagagtaactggtagcactagaattcaacccaagcaatctgactgtagt-----agta-catATATATGATA-CAGTATGCCTTCTATTCTTAAGTCTAAAAATTAACAAATGATAAATTCCTCATGTTGGCTAGACTGAGGGAGAACAATACTGAAAGCAATATAATATATTAC-AATACTTTTATAAAGGAATTTA--------------TCA-ATATTTGAATGCATACAGTTTTAGAAA------
i cebCap1.NW_016107522v1   C 0 C 0
s otoGar3.GL873742           1974000 307 -   2232465 ATTTtatcaatatgctcattttataggtgcaaaattatggtgtaataaatcaaaatcatctcagaaagagtaaatggtagaactagaactcaacccaggcaatctgactttagtagctacacg-cttacatatgata-caatattCCTTCTATCATTAAGCAGAAAA---AACAAATGATAAATTCCTCATGTTGTCTAGAATCTGGGAAAGCCATAATGGAAGCAATACAACATTTCACAAATAATTTTAGAAAGGAATTAAAACCCATACAAAACCCATACATTAAAACTCGTACAAATTT--TAATAAGCT
i otoGar3.GL873742         I 2894 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e chlSab2.chr17             28747677 870 -  71996105 I

a score=3276.000000
s hg38.chr6_GL000254v2_alt    590143 1 +   4827813 T
s panTro5.chr6              29562508 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29800748 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5603573 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29829185 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s colAng1.NW_012115566v1     2385081 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr6             126606842 1 - 158406734 T
i calJac3.chr6             C 0 C 0
s cebCap1.NW_016107522v1      223504 1 +   3820305 T
i cebCap1.NW_016107522v1   C 0 C 0
s otoGar3.GL873742           1974307 1 -   2232465 T
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e manLeu1.NW_012099655v1      227334 0 -    352859 C
e chlSab2.chr17             28747677 870 -  71996105 I
e cerAty1.NW_012002711v1      243177 0 +    766320 C
e macNem1.NW_012011356v1     2478089 1102 -   2996164 I
e macFas5.chr4              29491516 0 - 170955103 C

a score=128003.000000
s hg38.chr6_GL000254v2_alt    590144 31 +   4827813 AAACTGAATAATCTTATATTCTTTA-----ATTTTA-
s panTro5.chr6              29562509 31 + 175400573 AAACTGAATAATCTTATATTCTTTA-----ATTTTA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29800749 31 + 173848474 AAACTGAATAATCTTATATTCTTTA-----ATTTTA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5603574 31 +   6154872 AAACTGAATAATCTTATATTCTTTA-----ATTTTA-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29829186 36 + 172585720 AAACTGAATAATCTTATATTCTTTCATTTTATTTTA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29491516 31 - 170955103 -----GAATAATCTTATATTCTTTCATTTTATTTTA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2479191 36 -   2996164 AAACTGAATAATCTTATATTCTTTCATTTTATTTTA-
i macNem1.NW_012011356v1   I 1102 C 0
s cerAty1.NW_012002711v1      243177 31 +    766320 -----GAATAATCTTATATTCTTTAATTTTATTTTA-
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1      227334 31 -    352859 -----GAATAATCTTATATTCTTTAATTTTATTTTA-
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1     2385082 31 -   3067355 AAACTGAATAATCTTATATTCTTTA-----ATTTTA-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr6             126606843 24 - 158406734 AAACTGAATAATC--ATATTCTTTT----------A-
i calJac3.chr6             C 0 C 0
s cebCap1.NW_016107522v1      223505 26 +   3820305 AAACTGGATAATCTTATATTCTTTT----------A-
i cebCap1.NW_016107522v1   C 0 C 0
s otoGar3.GL873742           1974308 28 -   2232465 AAACTCAATAATCCTATCTTT---------ATTTTAA
i otoGar3.GL873742         C 0 I 146
e canFam3.chr35             26144709 15139 +  26524999 I
e chlSab2.chr17             28747677 870 -  71996105 I

a score=1005789.000000
s hg38.chr6_GL000254v2_alt    590175 175 +   4827813 AGGAAAAAACCAACTGCAGAAAATGCAATATTTATAAATACGCTTATGCTATCACTTAGTTGTTATGTTATTCATAATTAAGAAAAAATATTAATAGAGCTATTTA-ACCTGGTTTGTTGAATGTGATAATGATT-----ACAGAAAACATTGACTAATGCTGCTTATAATAATGAAAAAc
s panTro5.chr6              29562540 174 + 175400573 AGGAAAAAACCAACTGCAGAAAATGCAATATTTATAAATACAATTATGCTATCACTTAGTTGTTATGTTATTCATAATTAAGAAAAAATATTAATAGAGCTATTTA-ACCTG-TTTGTTGAATGTGATAATGATT-----ACAGAAAACATTGACTAATGCTGCTTATAATAATGAAAAAc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29800780 174 + 173848474 AGGAAAAAACCAACTGCAGAAAATGCAATATTTATAAATACAATTATGCTATCACTTAGTTGTTATGTTATTCATAATTAAGAAAAAATATTAATAGAGCTATTTA-ACCTG-TTTGTTGAATGTGATAATGATT-----ACAGAAAACATTGACTAATGCTGCTTATAATAATGAAAAAc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5603605 175 +   6154872 AGGAAAAAACCAACTGCAGAAAATGCAATATTTATAAATACGATTATGCTATCACTTAGTTGTTATGTTATTCATAATTGAGAAAAAATATTAATAGAGCTATTTA-ACCTGTTTTGTTGAATGTGATAATGATT-----ACAGAAAACATTGACTAATGCTGCTTATAATAATGAAAAAc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29829222 175 + 172585720 AGGAAAAAATCAACTGCAGGAAATGCAATGTTGATAAAGATGATTATGCTATCACTTTGTTGTTATGTTATTCATAACTCAGAAAAAATATTAATAGAGCTATTTA-ACATGTTTTGGTGAATGTGATAATGATT-----ACAGAAAACATTGACTAATGCTGCTTATAACAATGAAAAAc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29491547 175 - 170955103 AGGAAAAAATCAACTGCAGGAAATGCAATGTTTATAAAGATGATTATGCTATCACTTTGTTGTTATGTTATTCATAACTCAGAAAAAATATTAATAGAGCTATTTA-ATGTGTTTTGGTGAATGTGATAATGATT-----ACAGAAAACATTGACTAATGCTGCTTATAACAATGAAAAAc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2479227 175 -   2996164 AGGAAAAAATCAACTGCAGGAAATGCAATGTTTATAAAGATGATTATGCTATCACTTTGTTGTTATGTTATTCATAACTCAGAAAAAATATTAATAGAGCTATTTA-ACGTGTTTTGGTGAATGTGATAATGATT-----ACAGAAAACATTGACTAATGCTGCTTATAACAATGAAAAAc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      243208 175 +    766320 AGGAAAAAATCAACTGCAGAAAATGCAATGTTGATAAAGATGATTATGCTATCACTTTGTTGTTATTTTATTCATAACTCAGAAAAAATATTTATAGAGCTACTTA-ACCTGTTTTGGTGAATGTGATAATGATT-----ACAGAAAACATTGACTAATGCTGCttataacaatgaaaaac
i cerAty1.NW_012002711v1   C 0 I 1559
s manLeu1.NW_012099655v1      227365 175 -    352859 AGGAAAAAATCAACTGCAGAAAATGCAATGTTGATAAAGATGATTATGCTATCACTTTGTTGTTATTTTATTCATAACTCAAAAAAAATATTAATAGAGCTATTTA-ACCTGTTTTGGTGAATGTGATAATGATT-----ACAGAAAACATTGACTAATGCTGCttataacaatgaaaaac
i manLeu1.NW_012099655v1   C 0 I 1548
s colAng1.NW_012115566v1     2385113 172 -   3067355 AGGAAAAAATCAACTGCAGGAAATGCAATGTTTATAAAGATGATTATGCTATCACTTTGTTGTTATGTTAT---GAACTCAGAAAAAATATTAATAGAGCTATTTA-ACCTGTTTTGGTGAATGTGATAATGATT-----ACAAAAAACATTGACTAATGCTGCTTATAACAATGAAAAAc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr6             126606867 174 - 158406734 AGTAAAAAG-CAACTGCAGAAAATGCAATGTTTATGAAGATAATTATGCTAACACTAT-TTGTTATGTTATTCA----TTATAAAAAATATTAACGGAGCTATTTA-ACCTGTTTTGGTGAATGTGATAATGATTACACCACAGAAAACATTGACTAATGCTATTTATAATAATGAAAAAC
i calJac3.chr6             C 0 C 0
s cebCap1.NW_016107522v1      223531 179 +   3820305 AGGAAAAAATCGACTGCAGAAAATGCAATGTTTATGAAGATAATTATGCTAACACTAT-TTGTTATGTTATTCATAATTAATAAAAAATATTAACAGAGCTATTTA-ACCTGTTTTGGTGAATGTGATAATGATCACACCACAGAAAACATTGACTAATGCTATTTATAATAATGAAAAAc
i cebCap1.NW_016107522v1   C 0 C 0
s otoGar3.GL873742           1974482 171 -   2232465 agaaaaaaGCCAACTGCAGAAAATGCAATTCTTATAAAGATGAATATGCTAACACTA--TTGttatattatttataatttaaaaa----CTCAATAGAGCTCTTTATACCTGTT----TAAATGCAATAATGATTTAATTACAGAAATCATTGGTTAATGTTCCTTACAATAATGAAAAAC
i otoGar3.GL873742         I 146 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e chlSab2.chr17             28747677 870 -  71996105 I

a score=3507461.000000
s hg38.chr6_GL000254v2_alt    590350 896 +   4827813 tggaaaagtgactggtatacaataggcaatcaataaatatttgttaaat----aaataaaGAAAATTTTTCTGCAAA-TTGTGAATTGTTATCTGAGCAGAATGCTATGTAGCCTTTAAAAAAATAAT----GTATATCCACATAGCTTCAGAGGAATTTTTGTAAC-------------------AATTA---TATTATTATTAAAAATACTAAAATGTGTATACAAGATGGTGAGACAACTC-CAAAATATAAAACAACATTATGGACTTACCTTTATTTCTAAGTACTTACAAAGTTGTTGCAAAAATTTTAATATACATATTAATGGATTTAGCTATCATATGAGATTTGCAGATATTG-TTGCTAGATTTGTTTTTGAATATTTCAGTAGATATTTCT--GATTGTTAGAGATCATAATTTATGACCAAAATAGCTGTTCTAAATCTAATTTTGACACAAAGGCTCAAATTTGTAGCAT----AAAAAAATGTTAAGTACTGACTTCTAGTTTTCCAGGAGGTCTGGCATTAGAGATCCATTA----ATTTTT-AAAGGGTTAAATGTTCCTG------TTTCTTTTTTGGAAATATGTGATTTA--GAGTGcattgattctccaagtttggctcttggac---tagcagcagcagtacctgggtgcttgttaggcattcaaattcatgagtgccattccagacctactgaatcagaattcatgagtttgaggcttagacttaggtccttatgttttaacaagatcttcaggcaactcaaatgtctgctaaaatttgagaaccaat--gCTAAGGATGACAAAACCCCATAACTTACTAAA-----------------------------------------------------------CTATTTCCCTTCTATATGAAAATTTTAAGGGCTCCAAA-TTCCAGGTGTTAGAAGAGTACGAAATTGAAATATTTTTATCATATAGTCCAGACTTCCAGTATGAAAGA
s panTro5.chr6              29562714 897 + 175400573 tggaaaagtgactggtatacaataggcaatcaataaatatttgttaaat----aaataaaGAAAATTTTTCTGCAAA-TTGTGAGTTGTTATCTGAGCAGAATGCTATGTAGCCTTTAAAAAAATAAT----GTATATCCACATAGCTTCAAAGGAATTTTTGTAAC-------------------AATTA---TATTATTATTAAAAATACTAAAATGTGTATACAAGATGGTGAGACAACTC-CAAAATATAAAACAACATTATGGACTTACCTTTATTTCTAAGTACTTACAAAGTTGTTGCAAAAGTTTTAATATACATATTAATGGATTTAGCTATCATATGAGATTTGCAGATATTG-TTGCTAGATTTGTTTTTGAATATTTCTGTAGATATTTAT--GATTGTTAGAGATCATAATTTATGACCAAAATAGCTGTTCTAAATCTAATTTTGACACAAAGGCTCAAATTTGTAGCAT----AAAAAAATGTTAAGTACTGACTTCTAGTTTTCCAGGAGGTCTGGCATTAGAGATCCATTA----ATTTTTTAAAGGGTTAAATGTTCCTG------TTTCTTTTTTGGAAATATGTGATTTA--GAGTGcattgattctccaagtttggctcttggac---tagcagcagcagtacctgggtgcttgctaggcattcaaattcatgagtgccattccagacctactgaatcagaattcatgagtttgaggcttagacttaggtccttatgttttaacaagatcttcaggcaactcaaatgtctgctaaaatttgagaaccaAT--ACTAAGGACGACAAAACCCCATAACTTACTAAA-----------------------------------------------------------CTATTTCCCTTCTATATGAAAATTTTAAGGGCTCCAAA-TTTCAGGTGTTAGAAGAGTACGAAATTGAAATATTTTTATCATATAGTCCAGACTTCCAGTATGAAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29800954 897 + 173848474 tggaaaagtgactggtatacaataggcaatcaataaatatttgttaaat----aaataaaGAAAATTTTTCTGCAAA-TTGTGAGTTGTTATCTGAGCAGAATGCTATGTAGCCTTTAAAAAAATAAT----GTATATCCACATAGCTTCAAAGGAATTTTTGTAAC-------------------AATTA---TATTATTATTAAAAATACTAAAATGTGTATACAAGATGGTGAGACAACTC-CAAAATATAAAACAACATTATGGACTTACCTTTATTTCTAAGTACTTACAAAGTTGTTGCAAAAGTTTTAATATACATATTAATGGATTTAGCTATCATATGAGATTTGCAGATATTG-TTGCTAGATTTGTTTTTGAATATTTCTGTAGATATTTAT--GATTGTTAGAGATCATAATTTATGACCAAAATAGCTGTTCTAAATCTAATTTTGACACAAAGGCTCAAATTTGTAGCAT----AAAAAAATGTTAAGTACTGACTTCTAGTTTTCCAGGAGGTCTGGCATTAGAGATCCATTA----ATTTTTTAAAGGGTTAAATGTTCCTG------TTTCTTTTTTGGAAATATGTGATTTA--GAGTGcattgattctccaagtttggctcttggac---tagcagcagcagtacctgggtgcttgctaggcattcaaattcatgagtgccattccagacctactgaatcagaattcatgagtttgaggtttagacttaggtccttatgttttaacaagatcttcaggcaactcaaatgtctgctaaaatttgagaaccaAT--ACTAAGGACGACAAAACCCCATAACTTACTAAA-----------------------------------------------------------CTATTTCCCTTCTATATGAAAATTTTAAGGGCTCCAAA-TTTCAGGTGTTAGAAGAGTACGAAATTGAAATATTTTTATCATATAGTCCAGACTTCCAGTATGAAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5603780 897 +   6154872 tggaaaagtgactggtatacaataggcaatcaataaatatttgttaaat----aaataaaGAAAATTTTTCTGCAAA-TTGTGAATTGTTATGTGAGCAGAATGCTATGTAGCCTTTAAAAAAATAAT----GTATATCCACATAGCTTCAGAGGAATTTTTGTAAC-------------------AATTA---TATTATTATTAAAAATACTAAAATGTGTATACAAGATGGTGAGACAACTC-CAAAATATAAAACAACATTATGGACTTACCTTTATTTTTAAGTACTTACAAAGTTGTTGCAAAAATTTTAATATACATATTAATGGATTTAGCTATCATATGAGATTTGCAGATATTG-TTGCTAGATTTGTTTTTGAATATTTCAGTAGATATTTCT--GATTGTTAGAGATCATAATTTATGACCAAAATAGCTGTTCTAAATCTAATTTTGACACAAAGCCTCAAATTTGTAGCAT----AAAAAAATGTTAAGTACTGACTTCTAGTTTTCCAGGAGGTCTGGCATTAGAGATCCATTA----ATTTTTTAAAGGGTTAAATGTTCCTG------TTTCTTTTTTGGAAATATGTGATTTA--GAGTGcattgattctcccagtttggctcttggac---tagcagcagcagtacctgggtgcttgttaggcattcaaattcatgagtgccattccagacctactgaatcagaattcacgagtttgaggcttagacttaggtccttatgttttaacaagatcttcaggcaactcaaatgtctgctaaaatttgagaaccaat--gCTAAGGATAACAAAACCCCATAACTTACTAAA-----------------------------------------------------------CTATTTCCCTTCTATATGAAAATTTTAAGTGCTCCATA-TTCCAGGTGTTAGAAGAGTACGAAATTGAAATATTTTTATCATATAGTCCAGACTTCCAGTATGAAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29829397 892 + 172585720 tggaaaagtgactggtatacaataggcaatcaataaatgtttgttaaat----aaataaatAAAATGTTTCTGCAAA-TTGTAAATTGTTATCTGAGCAGAATGCTAAGTAGCCTTT-AAAAAATAAT----GTATATCCACATAGCTTCAGAGGAATTTCTGTAAC------------------TAATTA---TGTTATTACTAAAAATACTAAAATGTATATACAAGATAGTGAGATGACTC-CAAAATATAAAGCAACATTATGGACTTACTTTTATTTCTAAGCAGTTACAAAGTTGTTGCAAAAATTTTAATATACATTTTAATGGATATAGGTATTATATGAGATTTGCAGATATTG-TTGCTAGATTTGTTTTTGAATATTTCAGTACATATTTCT--GATTGTTAGAGATCATAATTTATGACCAAAATAGCTGTTCTACATCTAATTTTGACACAAAGGCTCAAATTACTAGCAT---AAAAAAAATGTTAAGAATTGACTTCTAGTTTTCCAGGAAGTCTGGCATTAGAGATGCATTA----ATTTTTTAAAGGGTTAAAAGTTCCTG------TTTCTTTTATGGAAATATGTGATTTAGCGAGTGcattgattctccaagtttggctctcggac---tagcagcagcggtacctgggagcttattacgcactcaaattcatgagtgcctctccagacctactgaatcagaattcctgagtttgaggcttagacttaggtccttgtgctttaataagattttcaggcaattcaaatgtctgctaaaatttgagaaccaat--gCTAAGGACAACAAAACCCGACAACTTACCAAA-----------------------------------------------------------CTATTTTCCTTCTATATGAAAATTCCAAGGGCTCCAAA-TTCCAGGTGCTACAAGAGTAGGAAATTGAAATATTTTTATGATATAG--------TCCAGTACGAAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29491722 892 - 170955103 tggaaaagtgactggtatacaataggcaatcaataaatgtttgttaaat----aaataaatAAAATGTTTCTGCAAA-TTGTAAATTGTTATCTGAGCAGAATGCTAAGTAGCCTTT-AAAAAATAAT----GTATATCCACATAGCTTCAGAGGAATTTCTGTAAC------------------TAATTA---TGTTATTACTAAAAATACTAAAATGTATATACAAGATAGTGAGATGACTC-CAAAATATAAAGCAACATTATGGACTTACTTTTATTTCTAAGCAGTTACAAAGTTGTTGCAAAAATTTTAATATACATTTTAATGGATATAGCTATTATATGAGATTTGCAGATATTG-TTGCTAGATTTGTTTTTGAATATTTCAGTACATATTTCT--GATTGTTAGAGATCATAATTTATGACCAAAATAGCTGTTCTACATCTAATTTTGACACAAAGGCTCAAATTACTAGCAT---AAAAAAAATGTTAAGAATTGACTTCTAGTTTTCCAGGAAGTCTGGCATTAGAGATGCATTA----ATTTTTTAAAGGGTTAAAAGTTCCTG------TTTCTTTTATGGAAATATGTGATTTAGCGAGTGcattgattctccaagtttggctctcggac---tagcagcagcggtacctgggagcttattacgcactcaaattcatgagtgcctctccagacctactgaatcagaattcctgagtttgaggcttagacttaggtccttgtgttttaataagatcttcaggcaattcaaatgtctgctaaaatttgagaaccaat--gCTAAGGACAACAAAACCCGACAACTTACTAAA-----------------------------------------------------------CTGTTTTCCTCCTATATGAAAATTCCAAGGGCTCCAAA-TTCCAGGTGCTAGAAGAGTAGGAAATTGAAATATTTTTATGATATAG--------TCCAGTACGAAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2479402 892 -   2996164 tggaaaagtgactggtatacaataggcaatcaataaatgtttgttaaat----aaataaatAAAATGTTTCTGCAAA-TTGTAAATTGTTATCTGAGCAGAATGCTAAGTAGCCTTT-AAAAAATAAT----GTATATCCACATAGCTTCAGAGGAATTTCTGTAAC------------------TAATTA---TGTTATTACTAAAAATACTAAAATGTATATACAAGATAGTGAGATGACTC-CAAAATATAAAGCAACATTATGGACTTACTTTTATTTCTAAGCAGTTACAAAGTTGTTGCAAAAATTTTAATATACATTTTAATGGATTTAGCTATTATATGAGATTTGCAGATATTG-TTGCTAGATTTGTTTTTGAATATTTCAGTACATATTTCT--GATTGTTAGAGATCATAATTTATGACCAAAATAGCTGTTCTACATCTAATTTTGACACAAAGGCTCAAATTACTAGCAT---AAAAAAAATGTTAAGAATTGACTTCTAGTTTTCCAGGAAGTCTGGCATTAGAGATGCATTA----ATTTTTTAAAGGGTTAAAAGTTCCTG------TTTCTTTTATGGAAATATGTGATTTAGCGAGTGcattgattctccaagtttggctctcggac---tagcagcagcggtacctgggagcttattacgcactcaaattcatgagtgcctctccagacctactgaatcagaattcctgagtttgaggcttagacttaggtccttgtgttttaataagatcttcaggcaattcaaatgtctgctaaaatttgagaaccaat--gCTAAGGACAACAAAACCCGACAACTTACTGAA-----------------------------------------------------------CTGTTTTCCTTCTATATGAAAATTCCAAGGGCTCCAAA-TTCCAGGTGCTAGAAGAGTAGGAAATTGAAATATTTTTATGATATAG--------TCCAGTACGAAAGA
i macNem1.NW_012011356v1   C 0 C 0
s colAng1.NW_012115566v1     2385285 895 -   3067355 tggaatagtgactggtatacaataggcaatcaataaatgtttgttaaat----aaataaatAAAATGTTTCTGCAAA-TTGTAAATTGTTATCTGAGCAGAATGCTATGTAGCCTTT-AAAAAATAAT----GTGTATCCACATAGCTTCAGAGGACTTTCTGTAAC------------------TAATTA---TGTTATTACTAAAAATACTAAAATATATATACAAGATGGTGAGATGACTC-CAAAATATAAAACAACATTATCGACTTACTTTTATTTCTAAGTAGTTACAAAGTTGTTGCAAAAATTGTAATATACATTTTAATGGATTTAGCTATTATATGAGATTTGCAGATGTTG-TTGCTAGATTTGTTTTTGAATGTTTCAGTACATATTTCT--GATTGTTAGAGATCATAATTTATGACCAAAATAGCTGTTCTACATCTAATTTTGACACAAAGGCTCAAATTACTACCATAAAAAAAAAAATGTTAAGAACTGACTTCTAGTTTTCCAGGAAGTCTGGCATTAGAGATGCATTA----ATTTTTTAAAGGGTTAAATGTTCCTG------TTTCTTTTATGGAAATATGTGATTTAGCGAGTGcattgattctccaagtttgactctcggac---tagcagcaacagtacctgggagcttattatgcactcaaattcatgagtgcctctccagacctactgaatcagaattcctgagtttgaggcttagacttaggtccttgtgttttaacaagatctttaggcaattcaaatgtctgctaaaatttgagaaccaat--gCTAAGGACAACAAAACCTGACAACTTACTAAA-----------------------------------------------------------CTATTTTCCTTCTATATGAAAATTCCAAGGGCTCCAAA-TTCCAGGTGCTAGAAGAGTAGGAAATTGAAATATTTTTATGATATAG--------TCCAGTACGAAAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr6             126607041 914 - 158406734 TGGAAAAGTGACTGGTATACAATAAGCAATCAATCaatatttattaaat------------aaaatttttCTGCAAA-TTGTGAATTGTTACTTGAGCAGAATGCTATGTAGACTT--AAAAAATAAT----GTATATCCACATAGCTTCAGAGGAATTTTTGAAACACAAAGTTAAGAAGTCTGTAATCG---TATTATTACTAAAAATACTAATATGTATATACAAGATGGTGAGAGAACTC-TGAAATATAAAACAACATTATGGGCTTAAAT-TATTTCTAAGTACTCACAAAGTTGTTGCAAAAATTTTAATATACATTTTAATGGATTTAGCTATCGCATGAGATTTACAGGTATTG-TTGCTAGATTTGTTTTTGAATATTTCAGTAGGTATTTCT--GATTGTTAGAGGTCATAATTTATAACCAAAATAGTTGTTCTAAATCTGATTTTGACACATAAGCTCAAATTTCTATCAT---TAAAAAAATGTTAAATACTGACTTCTAGCTTTCCAGGAGGTCTGGCATTAGAGATCTATTT----ACTTTCTTAGTGGCTAAATGTTCCTGTTTCTTTTTCTTTTTTGGAAATATGTGATTTAGCAAGTGAagtgattctccaagttaggctctcggatgaggagcagcagcagcacgtgggagcttgtgaggcattcagattcgtaagtgccattccagacctactgaatcagaattcctgagtttgagg------cttaggtccttgtgttttaacaagatctccaggcaattcacatgtgtgctaaaatttgaaaaccaatgAGCTTAGGACAACAAAACCCCACAACTTACTAAA-----------------------------------------------------------CTATTTCCCCTCTATATGAACATTTCAAGGGCTCCAAGTTTCCAGTTGCTAGAAGAACAGAAAAATGAAATATTTTTATCATATAGTCCAGACTTCCATTATGAAACA
i calJac3.chr6             C 0 I 4
s cebCap1.NW_016107522v1      223710 898 +   3820305 tggaaaagtgactggtatacaataggcaatcaatcaatatttattaaAT------------AAAATTTTTCTGCAAA-TTGTGAATTGTTATTTGAGCAGAATGCTACGTAACCTT--AAAAAATAAT----GTATATCCATATAGCTTCAGAGGAATTTTTGTAACACA-----AAGAAGTTTGTAATTA---TATTATTACTAAAAATACTAAAATGTGTATACAAGATAGTGAGAGAACTC-TGAAATATAAAACAACATTATTGGCTTACATATATTTCTAAGTACTTACAAAGTTGTTGCAAAAATTTTAATACACATTTTAATGGATTTAGCTATCGTATGAGATTTACAGGTATTG-CTGCTAGGTTTGTTTTTGAATATTTCAGTAGATATTTCT--GATTGTTAGAGATCATAATTTATGACCAAAATAGCTGTTCTAAATCTGATTTTGACACATAGGCTCAAATATCTATCAT---TAAAAAAATGTTAAATACTGACTTGTAGTTTTCCAGGAGGTCTGGCATTAGAGATTTATTT----ATTTTCTTAGTGGTTAAATGTTCCTG------TTTCTTTTTTGGAACTATGTGATTTAGCAAGGGAagtgattctccaagtttggctctcggac---gagcagcagcagcacgtgggagcttgtgaggcattcagattcataagtgccattccagacctgctgaatcagaattgctgagtttgagg------cgtaggtccttgtgttttaacaagatctccaggcgattcacatgtgtgctaaaatttgagaaccaatgAGCTTAGGACAGCAAAACCCCACAACTTACTAAA-----------------------------------------------------------CTATTTCCCCTCTATATGAACATTTCAAGGGCGCCAAGTTTCCAGGTGCT---AGAACAGAAAAATGAAATATTTTTATCATATAGTCCAGACTTCCATTATGaaaga
i cebCap1.NW_016107522v1   C 0 I 2877
s otoGar3.GL873742           1974653 932 -   2232465 TAGAAAAGTGACTAGTAT-----------TCAATAAATAGTTGTTGAATAATGAAATTAACAAAATGTTCCTGAAAATTTGTGATTTGGAAACTGAGCACCATACTAGGTAGCCTTT-AAAAAATAATAAAGATATATCCACATAGCTTCAGAGAAATTTTTGCAAC-----ACAAAAACATTTATAATCATATTATTATTACTAAAAATGCTA--ACGTGTATGAAAGATGGCAAGAGAACTCATTAATTACCAGACACCATTATGAGCTAACATTTATTTCTAAGTACTTACAATGTTGTTGTAAAGACTTTAATATACATTTTCATGGATTGGGCTAAC-TATGAGATTTGCAGGGCTTGTTTGCTAGACTCATTTTAGAATCTTTAAGTCTATGTTTCTAGGATTGTAAGAGATCATACTGTGTGATCAAAACAGATATTTAAAATCCGATTTTGACACATAGGTTTAAATGCCTAACAT---------------AAATAGTAACTCCTAGTTTTTCAGGAGGTCTGAAGATAGaaattaattaatttattttttaaaGGTTTAAATGTT----------TTTCTTTTTCAGAAATGTATGAATTAGCAAGGGTGgtggttctccaagtgtggccctcagactagtagcatcagctgcacttgggagctcctaaggcatccaaatt--------------cagaccta------gagtatccctgagtgtgggg------ctgtggtcagtgtgttttaacattctctcctggtgattcatgtgtcgactagagtttgagagctaATTAGCCAGGGACAGCAAAAATCCATAGCTTACTATGGATTTTtactcctactcctactagtagtactagtactaggagtactaggagtactactcctactCCCTCTCTGTGCAAAAATTTCAAAGGCCCTGAG-CT--------TAGGGGAATAGGAAGATGAAATATGTTTGTCATATAGTTC-GACTTTCATTACAAAAAA
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e manLeu1.NW_012099655v1      227540 1548 -    352859 I
e chlSab2.chr17             28747677 870 -  71996105 I
e cerAty1.NW_012002711v1      243383 1559 +    766320 I

a score=149264.000000
s hg38.chr6_GL000254v2_alt    591246 54 +   4827813 CGTAAAATAAAAAAAGTCCTGAATCTTCTAAGGAAACAATATGTTTAAAAGTAT--
s panTro5.chr6              29563611 54 + 175400573 CGTAAAATAAAAAAAATCCTGAATCTTCTAAGGAAACAATATGTTTAAAAGTAT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29801851 54 + 173848474 CGTAAAATAAAAAAAATCCTGAATCTTCTAAGGAAACAATATGTTTAAAAGTAT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5604677 54 +   6154872 CGTAAAATTAAAAAAATCCTGAATCTTCTAAGGAAACAGTATGTTTAAAAATAT--
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29830289 53 + 172585720 TGTAAAATTAAAAAA-TCCTGAATCTTCTAGGGAAACAACATGTTTAAAAATAT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29492614 53 - 170955103 TGTAAAATTAAAAAA-TCCTGAATCTTCTAGGGAAAAAACATGTTTAAAAATAT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2480294 53 -   2996164 TGTAAAATAAAAAAA-TCCTGAATCTTCTAGGGAAAAAACATGTTTAAAAATAT--
i macNem1.NW_012011356v1   C 0 C 0
s colAng1.NW_012115566v1     2386180 53 -   3067355 TGTAAAATAAAACAA-TCCTGAATCTTCTAAGAAAACAACATGTTTAAAAATAT--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr6             126607959 54 - 158406734 TATATAAAAGAAACAACCCTGAATTCTCAAGGGAAACAACATGTTTAAAAATAT--
i calJac3.chr6             I 4 I 2786
s otoGar3.GL873742           1975585 55 -   2232465 -GGAAAGGAAAAACAAACCTAGGTTCTCAAGGTAAACAACATGTTAAAAAACCTAT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e cebCap1.NW_016107522v1      224608 2877 +   3820305 I
e manLeu1.NW_012099655v1      227540 1548 -    352859 I
e chlSab2.chr17             28747677 870 -  71996105 I
e cerAty1.NW_012002711v1      243383 1559 +    766320 I

a score=6876.000000
s hg38.chr6_GL000254v2_alt    591300 2 +   4827813 CT
s panTro5.chr6              29563665 2 + 175400573 CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29801905 2 + 173848474 CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5604731 2 +   6154872 CT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29830342 2 + 172585720 CT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              29492667 2 - 170955103 CT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2480347 2 -   2996164 CT
i macNem1.NW_012011356v1   C 0 C 0
s colAng1.NW_012115566v1     2386233 2 -   3067355 CT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742           1975640 2 -   2232465 CT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e cebCap1.NW_016107522v1      224608 2877 +   3820305 I
e calJac3.chr6             126608013 2786 - 158406734 I
e manLeu1.NW_012099655v1      227540 1548 -    352859 I
e chlSab2.chr17             28747677 870 -  71996105 I
e cerAty1.NW_012002711v1      243383 1559 +    766320 I

a score=7736.000000
s hg38.chr6_GL000254v2_alt    591302 3 +   4827813 GAG
s panTro5.chr6              29563667 3 + 175400573 GAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29801907 3 + 173848474 GAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5604733 3 +   6154872 GAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              29830344 3 + 172585720 GAG
i rheMac8.chr4             C 0 I 179
s macFas5.chr4              29492669 3 - 170955103 GAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1     2480349 3 -   2996164 GAG
i macNem1.NW_012011356v1   C 0 I 179
s colAng1.NW_012115566v1     2386235 3 -   3067355 GAG
i colAng1.NW_012115566v1   C 0 I 179
s calJac3.chr6             126610799 3 - 158406734 GAT
i calJac3.chr6             I 2786 C 0
s otoGar3.GL873742           1975642 3 -   2232465 TAT
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e cebCap1.NW_016107522v1      224608 2877 +   3820305 I
e manLeu1.NW_012099655v1      227540 1548 -    352859 I
e chlSab2.chr17             28747677 870 -  71996105 I
e cerAty1.NW_012002711v1      243383 1559 +    766320 I

a score=9311.000000
s hg38.chr6_GL000254v2_alt    591305 7 +   4827813 AGTAGAT
s panTro5.chr6              29563670 7 + 175400573 AGTAGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29801910 7 + 173848474 AGTAGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5604736 7 +   6154872 AGTAGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29492672 7 - 170955103 TGTAAAT
i macFas5.chr4             C 0 C 0
s calJac3.chr6             126610802 7 - 158406734 AGTAGGT
i calJac3.chr6             C 0 C 0
s otoGar3.GL873742           1975645 7 -   2232465 TATAGAT
i otoGar3.GL873742         C 0 I 9246
e canFam3.chr35             26144709 15139 +  26524999 I
e cebCap1.NW_016107522v1      224608 2877 +   3820305 I
e colAng1.NW_012115566v1     2386238 179 -   3067355 I
e manLeu1.NW_012099655v1      227540 1548 -    352859 I
e chlSab2.chr17             28747677 870 -  71996105 I
e cerAty1.NW_012002711v1      243383 1559 +    766320 I
e macNem1.NW_012011356v1     2480352 179 -   2996164 I
e rheMac8.chr4              29830347 179 + 172585720 I

a score=295.000000
s hg38.chr6_GL000254v2_alt    591312 1 +   4827813 T
s panTro5.chr6              29563677 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29801917 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5604743 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4              29492679 1 - 170955103 T
i macFas5.chr4             C 0 I 171
s calJac3.chr6             126610809 1 - 158406734 T
i calJac3.chr6             C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1975652 9246 -   2232465 I
e cebCap1.NW_016107522v1      224608 2877 +   3820305 I
e colAng1.NW_012115566v1     2386238 179 -   3067355 I
e manLeu1.NW_012099655v1      227540 1548 -    352859 I
e chlSab2.chr17             28747677 870 -  71996105 I
e cerAty1.NW_012002711v1      243383 1559 +    766320 I
e macNem1.NW_012011356v1     2480352 179 -   2996164 I
e rheMac8.chr4              29830347 179 + 172585720 I

a score=6270.000000
s hg38.chr6_GL000254v2_alt    591313 10 +   4827813 TGAGAG-TTTT
s panTro5.chr6              29563678 10 + 175400573 TGAGAG-TTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29801918 11 + 173848474 TGAGAGTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5604744 10 +   6154872 TGAGAG-TTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chr6             126610810 10 - 158406734 TAAGAG-TTTA
i calJac3.chr6             C 0 I 5
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1975652 9246 -   2232465 I
e cebCap1.NW_016107522v1      224608 2877 +   3820305 I
e colAng1.NW_012115566v1     2386238 179 -   3067355 I
e manLeu1.NW_012099655v1      227540 1548 -    352859 I
e chlSab2.chr17             28747677 870 -  71996105 I
e cerAty1.NW_012002711v1      243383 1559 +    766320 I
e macNem1.NW_012011356v1     2480352 179 -   2996164 I
e macFas5.chr4              29492680 171 - 170955103 I
e rheMac8.chr4              29830347 179 + 172585720 I

a score=1600647.000000
s hg38.chr6_GL000254v2_alt    591323 1064 +   4827813 AAAAAAAACTGTTTTTAAAGACGTAAAGTAGAGCTATGAGCTCACCAAAGTCCACTGAAGTTCGCCAAAGAGCTGAGTTACTTCAGCTCTCATGAGACCAGTAATTTTTGCTTGACGAAGGTATTTGGCAAGAAAATAATTCCACAATAACACATTTAAAGATACCTAGAACATTGAAAAAAATTCTCAAATTAAGATAATATAGCTTAATTCCCAAGAACTTATTTCATCTCTTTTGTTACTAATCTAGAAGGTCAGGAGTGTGG-TAAAGGCAGTGTCTGATAAGGTTATGAGCTTCCAAAGAGTTTCTACATTTTTAGTGCAGACACTCTCCCTTTGGGGGCAAAGTACGGTTTCTCCCATCCCTATTAAAAAG-AA----AACAGTTAAACTAAGTTATCAGAATGAGATATTTTGACTCTTAACAATTTACACTCAAGGCTTTATGCTGAGTTGTCTTGTTCTAATCAAGCATGAAGGTGTCAAGCACAAAGCACGTGGCAAACGAAAGACACTCCCGCCTCATTCTGAAAACAAATACTGATAACCAACCCCACCC-TCTTACCATTTCAGGCCAACCCATCTTATGATACTGGGACCAACTTGAAATAATTTAGAGGTATATTTAGGTTTCCCTCTCCCTTACTTCAGTAAAAGATCATTTTAGAATAACTTTATTCCTTTCCTAAGGGAAAGACAAAAAAGTTTCCATCCCGT-CAGAACATACGGGGAGAG-AAAACACACAGGCCCAGAGGTGGGAAGGTGTGTGACAGTCCATAACCCATTACACAACGATGCAACCAAAGGCTAAACCATGAGTTGAATATAGTTTTAATATTAAAAATAGGAACTAGTTATCATCCAAATGAACCACTGGAAAAAATATTACCATTACTTTAAAAAATACATTCCAATATTGGAAATAATCTGAAAACACTTTCCAGTAGTAACAATCCTCC-TTAATATGAGGGAC---A---------------------AAAAAAAAGACCAGGCTTTGACCAAGTCCTTAGAGCATATTTCCATTTCATGATTTATATTCAAGAACCAAGCAAC-AAGCTGGACAGCTGCCT
s panTro5.chr6              29563688 1058 + 175400573 TAAAAAAACTGTTTTTAAAGACGTAAAGTAGAGCTATGAGCTCACCAAAGTCCACTGAAGTTCGCCAAAGAGCTGAGTTACTTCAGCTCTCATGAGACCAGTAATTTTTGCTTGACGAAGGTATTTGGCAAGAAAATAATTCCACAATAACACATTTAAAGATACCCAGAACATTGAAAAAAATTCTCAAATTAAGATAATATAGCTTAATTCCCAAGAACTTATTTCATCTCTTTTGTTACTAATCTAGAAGGTCAGGAGTGTGG-TAAAGGCAGTGTCTGATAAGGTTATGAGCTTCCAAAGAGTTTCTACATTTTTAGTGCAGACACTCTCCCTTTGGGGGCAAAGTACGGTTTCTCCCATCCCTATTAAAAAG-AA----AACAGTT----TAAGTTATCAGAATGAGATATTTTGACTCT-AACAATTTACACTCAAGCCTTTATGCTGAGTTGTCTTGTTCTAATCAAGCATGAAGGTGTCAAGCACAAAGCACGTGGCAAACGAAAGACACTCCCGCCTCATTCTGAAAACAAATACTGATAACCAACCCCACCC-TCCTACCACTTCAGGCCAACCCATCTTATGATACTGGGACCAACTTGAAATAATTTAGAGGTATATTTAGGTTTCCCTCTCCCTTACTTCAGTAAAAGATCATTTTAGAATAACTTTATTCCTTTCCTAAGGGAAAGACAAAAAAGTTTCTCTCCCAT-CAGAACATACGGGGAGAG-AAAACACACAGGCCCAGAGGTGGGAAGGTGTGTGACAGTCCATAACCCATTACACAGCGATGCAACCAAAGGCTAAACCATGAGTTGAATATAGTTTTAATATTAAAAATAGGAACTAGTTATCATCCAAATGAACCACTGGAAAAAA-ATTACCATTACTTTAAAAAATACATTCCAATATTGGAAATAATCTGAAAACACTTTCCAGTAGTAACAATCCTCC-TTAATATGAGGGAC---A---------------------AAAAAAAAGACCAGGCTTTGACCAAGTCCTTAGAGCATATTTCCATTTCATGATTTATATTCAAGAACCAAGCAAC-AAGCTGGACAGCTGCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29801929 1060 + 173848474 AAAAAAAACTGTTTTTAAAGACGTAAAGTAGAGCTATGAGCTCACCAAAGTCCACTGAAGTTCGCCAAAGAGCTGAGTTACTTCAGCTCTCATGAGACCAGTAATTTTTGCTTGACGAAGATATTTGGCAAGAAAATAATTCCACAATAACACATTTAAAGATACCCAGAACATTGAAAAAAATTCTCAAATTAAGATAATATAGCTTAATTCCCAAGAACTTATTTCATCTCTTTTGTTACTAATCTAGAAGGCCAGGAGTGTGG-TAAAGGCAGTGTCTGATAAGGTTATGAGCTTCCAAAGAGTTTCTACATTTTTAGTGCAGACACTCTCCCTTTGGGGGCAAAGTACGGTTTCTCCCATCCCTATTAAAAAG-AA----AACAGTTAAACTAAGTTATCAGAATGAGATATTTTGACTCT-AATAATTTACACTCAAGGCTTTATGCTGAGTTGTCTTGTTCTAATCAAGCATGAAGGTGTCAAGCACAAAGCACGTGGCAAACGAAAGACACTCCCGCCTCATTCTGAAAACAAATACTGATAACCAACCCCACCC-TCCTACCATTTCAGGCCAACCCATCTTATGATACTGGGACCAACTTGAAATAATTTAGAGGTATATTTAGGTTTCCCTCTCCCTTACTTCAGTAAAAGATCATTTTAGAATAACTTTATTCCTTTCCTAAGGGAAAGACAAAAAAGTTTCTCTCCCAT-CAGAACATACGGGGAGAG-AAAACACACAGGCCCAGAGGTGGGAAGGTGTGTGACAGTCCATAACCCATTACACAGCGATGCAACCAAAGGCTAAACCATGAGTTGAATATAGTTTTAATATTAAAAATAGGAACTAGTTATCATCCAAATGAACCACTGGAAAAA--ATTACCATTACTTTAAAAAATACATTCCAATATTGGAAATAATCTGAAAACACTTTCCAGTAGTAACAATCCTCC-TTAATATGAGGGAC-------------------------AAAAAAAAGACCAGGCTTTGACCAAGTCCTTAGAGCATATTTCCATTTCATGATTTATATTCAAGAACCAAGCAAC-AAGCTGGACAGCTGCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5604754 1060 +   6154872 AAAAAAAACTGTTTTTAAAGACGTAAAGTAGAGCTATGGGCTCACCAAAGTCCACTGAATTTCGCTGAAGAGCTGAGTTACTTCAGCTCTCATGAGACCAGTAATTTTTGCTTGACAAAGGTATTTGGCAAGAAAATAATTCCACAATAACACATTTAAAGATACCTAGAACATTGAAAAAAATTCTCAAATTAAGATAATATAGCTTAATTCCCAAGAACTTATTTCATCTCTTTTGTTACTAATCTAGAAGTTCAGGAGTGTGG-TAAAGGCAGTGTCTGATAAGGTTATGAGCTTCCAAAGAGTTTCTACATTTTTCGTGCAGACATTCTCCCTTT-GGGGCAAAGTACGGTTTCTCCCATCCCTATTAAAAAG-AA----AACAGTTAAACTAAGTTATCAGAATGAGATATTTTGACTCT-AACAATTTACACTCAAGGCTTTATGCTGAGTTGTCTTGTTCTAATCAAGCATGAAGGTGTCAAGCACAAAGCACTTGGCAAACAAAAGACACTCCTGCCTCATTCTGAAAACAAATACTGATAACCAACCCCACCC-TCTTACCATTTCAGGCCAACCCATCTTATGATACTGGGACCAACTTGAAATAATTTAGAGGTATATTTAGGTTTCCCTCTCCCTTACTTCAGTAAAAGATCATTTTAGAATAACTTTATTCCTTTCCTAA-GGAAAGACAAAAAAGTTTCTATCCCAT-CAGAACATACGGGGAGAG-AAAACACACAGGGCCAGAGGTGGGAAGGTGTGTGACAGTCCATAACCCGTTACACAACGATGCAACCAAAGGCTAAACCATGAGTTGAATATAGTTTTAATATTAAAAATAGGAACTAGTTATCATCCAAATGAACCACTGGAAAAAATATTACCATTACTTTAAAAAATACGTTCCAATATTGGAAATAATCTGAAAACACTTTCCAGTAGTAACAATCCTCC-TTAATATGAGGGAC-------------------------AAAAAAAAGACCAGGCTTTCACCAAGTCCTTAGAGCATATTTCCATTTCATGATTTATATTCAAGAACCAAGCAAC-AAGCTGCACAGCTGCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chr6             126610825 1053 - 158406734 AAAAAAACCTCTTTTTAAAGATATAAAGCAGAACTACAAGCTCACCAAAGTTCACTAAAGTTTGCCAAAGAGCTGAGTTACATCAGCTCTCATGAGACCAATAATTTTTGC-TGACAAGGGTATTTGGCAAGAAAATAATTCCATAATAGC-AATTTAAAGATACCTAGAACATTGAAAACAGT-CTCAAATTAAGATA-----ACTTAATTCCCAAGAACTGATTTCATCT-TTTTGTTACTAATCTA---GGTCAGGAGTGTGG-TAAAGGCAGTATCTGGTAAGATCATGAGCTTCCAAAGAGTTTCTAAATTTTTAGTGTGGACACCCTCCCTTTGGGGGCAAAGTGTAGTTCCTCCCATCCCTATTTAACAG-AAAAGAAAAAATTAAACGAAGTCATCAGAATGAGATGTTTTGATTCC-AACAATTTATGCTCAAGGCTTTACGCTGAGTTGTCTTGTTCTAACCAAGCATGAAAATATCGAACACAAAGCACATGGCAAAGGAAAGATGTTCCCACCTCATTCTGAAAACAAATACTAATAACCAACCCCACTT--CATACCCTTTCAGGCCAACCCATATTATGATACTGGGACCAACTTGAAATAATTTAGAGGTATATTTAGATTTCCCTCTCCCTTACTTCAGTGAGAGATAATTTAAGAATAACTTTATTTCATGCCTAAGGGAAAGGCAAAAAAGTTTCTATCCCAA-CAGAACATATGGGGAGAG-AAAACACATAGGCCCAGAGGTGGGCAGGCATGTAGCAGTTCATAACCCATCACACAAAGATGCAACCAAAGGCTAGACCATGAGTTGGATGTAGTTTTAACATTAAAAATAGGAACTAGTTATCATCCAAATGAACCACTGGAAAAC-TACTACCATTACTTAAAAAACCTCATTCCAATACTGGAAATAATCTGAAAACACTTTCCAGTAGTAACAATGCTCCTTTATTATGAGGGACCAAA---------------------AAAGAAAAGACCAGGTTTTGAGCAAGTCCTTAGAGCACCATTTCAT-----AATTTATAGTCAAGAATCAAGCACCAAAGCTGGACAGCTGCCT
i calJac3.chr6             I 5 C 0
s saiBol1.JH378147           3389514 1069 +  17632151 agaaAAAACTGTCTTTAGAGATATAAAATACAACTACAATCTCACAGAAGTCCA--AAAGTTCACCAAAAAGCTG----ACTTCAGCTCTCATGAGGCCAATAATTT-----TGACAAAGATATTTGGCAAGAAAATGATTCCTCAGTAACAAATTTAAAGATACCTAGAACATTGAAAAAAAT--GCAAATTAAAATAAAGTGACTTAATTCCCAATAAATTGTTTTA-CT-TTTTGTTACTCATCTAGATGATCAGAAATATGGCTAAAGGCAATTGCTGATGAAGTTATGAGCTTCCAAGCTGTCTCTAAATCCTTAGTGCAGACACCCTCCATTTTGGGGCAAAGTACC-CTCCCCCCACCCCt-tttaaaaa-aaatttaaaaatt-----aattCATCAGAATGAGATGTTTTGATTCC-ATCCGTTTACGCTCAAGGCTTTGGGATGTGTTGTCTTGTTTGAACCAAGCATGATGGTATCAAGCACAAAGCCAATGGCAAAGGAAAGATGTTCCCATCTCCTGCTGAAAACAAATACTTATAACCAGGCTCACGTCCCCCACCCTTTGGGGGCAACCTATTTTATCCTGCTGGGACTAACTTGAAATAATTTAGAGGTGTATTTAGGTTTCCCTGTCCCTTAATTCCATGAAAG---ATTTTAGAATAAATTTGTTCCATTCCTAAGGGAAAAGCAAAACAGTTTCTATCCCCATCAGAATATATGGAGAAAGAAAAAAACATAGACCTAGAGGTGGCAAGGTATGTAACAGTATATCGCCCATTACACAAATATACAACCAAAGGCTAAACTGTGAGTTGGATGTAGTTTTAATATTAAAAATAGGGAGTAGTTCTCATCCACATGAGCCACTGGAAAA--TATTACCATTACTTAAAAAACACATATCCAATATTGGAAATAATGTGGAAACAACTTCTAATAGTAACATTGCTCC-TAATTATGAGGGACCAAAAACAGAAAGAAAAAAAAAAGGAAAGAAAATATCAGGCTTTGATCTAGTCCTTAGATCATTGTTCCATTGAACAATTTCTATTCAAGGGTCAAGCACCAAAACTGAACAGCTGCCT
i saiBol1.JH378147         N 0 I 457
s cebCap1.NW_016107522v1      227485 1068 +   3820305 AAAAACAACTCTTTTTAAAGATGTGAAGTAGAACTACAAGCTCACCAAAGTCCACTAAAGTTTGCCAAAGAGCTGAGTTACATCAGCTCTCATGAGACCAATAATTTTTGC-CGACAAAGGTATTTGGCAAGAAAATAATTCCATAATAGCACATTTAAAGATACCTAGAACATTGAAAACATT-CTCAAATTAAGATA-----ACTTAATTCACAAGAACTTATTTCATCT-TTTTGTTACTAATCTA---GGTCAGGAGTGTGG-TAAAGGCAGTATCTGATAAGATCATGAGCTTTCGAAGAGTTTCTAAATTTTAAGTGCGGACACCCTCCCTTTGGGGGCAAAGTGCAGTTCCTCCCACCCCTATTTAACAGAAAAAAAAAAAATTAAACTAAGTCATCAGAATGAGATGTTTTGATTCC-AACAATTTATGCTCAAGGCTTTATGCTGAGTTGTCTTGTTCTAACCAAGCATGAAAATATCGAACACAAAGCACGTGGCAAAGGAAAGATGTTCCCACCTCATTCTGAAAACAAATACTGATAACCAACCCCACCC-TCATACCCTTTCAGGCCAACCCATCTTATGATACTGGGACCAACTTGAAAAAAATTATAGGTATATTTAGATTTCCCTCTCCCTTACTTCAGTGAAAGATCATTTCAGAATAACTTTATTCCATTCCTAAGGGAAAGGTAAAAAAGTTTCTAACCCAA--TGAACATATGGGGAGAG-AAAACACATAGGCCCAGAGCGGGGAAGGTGTGTAGCAGTCCATAACCCACCACACAAAGATGCAACCAAAGGCTAAACCATGAGTTGGATGTTGTTTTAATATTAAAAATAGGAACTAGTTATCATCCAAATGAACCACTGGAAAAA-TATTACCATTACTTAAAAAAACACATTCCAATACTGGAAATAATCTGAAAACACTTTCCAGTAGTAACAATGCTCCTTTATTATAAGGGGCCAAA-------------AAAGAAAAAAAGAAAAGACCAGGTTTTGAGCAAGTCCTTAGAGCACCTTTCCATTTCATAATTTCTAGCCAGGAATCAAGCACCAAAGCTGGACAGCTGCCT
i cebCap1.NW_016107522v1   I 2877 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1975652 9246 -   2232465 I
e colAng1.NW_012115566v1     2386238  179 -   3067355 I
e manLeu1.NW_012099655v1      227540 1548 -    352859 I
e chlSab2.chr17             28747677  870 -  71996105 I
e cerAty1.NW_012002711v1      243383 1559 +    766320 I
e macNem1.NW_012011356v1     2480352  179 -   2996164 I
e macFas5.chr4              29492680  171 - 170955103 I
e rheMac8.chr4              29830347  179 + 172585720 I

a score=191257.000000
s hg38.chr6_GL000254v2_alt    592387 117 +   4827813 CTGTAACACTGTGTCCAATAGTGGTGTCCCAGATAGTTTAAGTGCCACTCGTCATTAGATGTTATACTTCAGCAATACTTCCAATTTTAAGTCTGTACTTTAAGAGGGACCCACAGG
s panTro5.chr6              29564746 117 + 175400573 CTGTAACACTGTGTCCAATAGTGGTGTCCCAGATAGTTTAAGTGCCACTCGTCATTAGATGTTATACTTCAGCAATACTTCCAATTTTAAGTCTGTACTTTAAGAGGGACCCACAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29802989 117 + 173848474 CTGTAACACTGTGTCCAATAGTGGTGTCCCAGATAGTTTAAGTGCCACTCGTCATTAGATGTTATACTTCAGCAATACTTCCAATTTTAAGTCTGTACTTTAAGAGGGACCCACAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5605814 117 +   6154872 CTGTAACACTGTGTCCAATAGTGGTGTCCCAGATAGTTTAAGTGCCACTCGTCATTAGATGTTATACTTCAGCAATACTTCCAATTTTAAGTCTGTACTTTAAGAGGGACCAACAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chr6             126611878 117 - 158406734 TTGTAAGACTGTGTCCAATAGTGGTTTCCCAGATAGCTTAAGTGCCACTCCTCATTAGAGATCATACTTCAGCAATACTTTCAATTTTAAGTCTGTGCTTTGAAAGGAGCCCACAGG
i calJac3.chr6             C 0 C 0
s saiBol1.JH378147           3391040 117 +  17632151 taACAAGACCATGTCCAGTAGTGGTGTCCCAGATAGTTCAAGTGCCACTCCTCATTAGAGGCTCTATTTCAGTAATACTTTCCATTTTAAGTCTGTGCTTTAAAAGGGACTCACAGG
i saiBol1.JH378147         I 457 C 0
s cebCap1.NW_016107522v1      228553 117 +   3820305 TTGTAAGACTGTGTCCAACAGTGGTCCCCCAGAGAGCTTAAGTGCCACTCCTCATTAGCGATCATGCTTCAGCAATACTTTCAATCTTAAGTCTGTGCTTTAAAAGGAGCCCACAGG
i cebCap1.NW_016107522v1   C 0 I 360
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1975652 9246 -   2232465 I
e colAng1.NW_012115566v1     2386238 179 -   3067355 I
e manLeu1.NW_012099655v1      227540 1548 -    352859 I
e chlSab2.chr17             28747677 870 -  71996105 I
e cerAty1.NW_012002711v1      243383 1559 +    766320 I
e macNem1.NW_012011356v1     2480352 179 -   2996164 I
e macFas5.chr4              29492680 171 - 170955103 I
e rheMac8.chr4              29830347 179 + 172585720 I

a score=38130.000000
s hg38.chr6_GL000254v2_alt    592504 37 +   4827813 AACTCAGCACCAGGCAGAGCAGTGTAAGACTGGAAAA
s panTro5.chr6              29564863 37 + 175400573 AACTCAGCACCAGGCAGAGCAGTGTAAGACTGGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29803106 37 + 173848474 AACTCAGCACCAGGCAGAGCAGTGTAAGACTGGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5605931 37 +   6154872 AACTCAGCACCAGGCAGAGCAGTGTAAGACTGGAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chr6             126611995 37 - 158406734 CGTGGGGCACCAGGCAGAACAGTCTAAGACCAGCAAA
i calJac3.chr6             C 0 C 0
s saiBol1.JH378147           3391157 37 +  17632151 CATGTGGCACCAGGCAGAGCAGTCTAAAGTTGGCAAA
i saiBol1.JH378147         C 0 C 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1975652 9246 -   2232465 I
e cebCap1.NW_016107522v1      228670 360 +   3820305 I
e colAng1.NW_012115566v1     2386238 179 -   3067355 I
e manLeu1.NW_012099655v1      227540 1548 -    352859 I
e chlSab2.chr17             28747677 870 -  71996105 I
e cerAty1.NW_012002711v1      243383 1559 +    766320 I
e macNem1.NW_012011356v1     2480352 179 -   2996164 I
e macFas5.chr4              29492680 171 - 170955103 I
e rheMac8.chr4              29830347 179 + 172585720 I

a score=643912.000000
s hg38.chr6_GL000254v2_alt    592541 421 +   4827813 GAAGACTGAAC-TTTTGATTGGTCACTCACATGTTTTTTAGCGAGATACAGAATTACATTTACACTCTTTCCTTGCATTTCTTCTATATTAATGATCCCTCTT-----GCAGGAGGTGTAGGAGAAAGAATGCTGCGTCAGTACAAGAACAAGACTTTTTGGTCAAAAGTTGATACCGTTTAAATTCCCTCTCCCAGCGCTTCATGCAAAAAAAAAAAAAGGTTACTTCCTGAATTAAGGTTTGTATTTAGTAACCAACATTGACTGGACAGAACATACGTGACTTGGATTCCAAATAAATGAGATTGCTCTTTTTT-GGGTTTGTACTGTGCAGCTCTTGCCACAGTTGTTGAAGAGTTAGGGCTGTGTCTGATCAGGAGGCATCTGTAGGATTTTGATCTCCAAGGAATTGTGGGTGAGTCACATA
s panTro5.chr6              29564900 419 + 175400573 GAAGACTGAAC-TTTTGATTGGTCACTCACATGTTTTCTAGCGAGATATAGAATTACATTTACACTCTTTCCTTGCATTTCTTCTATATTAATGATCCCTCTT-----GCAGGAGGTGTAGGAGAAAGAGTGCTGCGTCAGTACAAGAACAAGACTTTTTGGTCAAAAGTTGATACCGTTTAAATTCCCTCTCCCAACGCTTCATGCAAAAAAAAAAA--GGTTACTTCCTGAATTAAGGTTTGTATTTAGTAACCAACATTGACTGGACAGAACATACGTGACTTGGATTCCAAATAAATGAGCTTGCTCTTTTTT-GGGTTTGTACTGTGCAGCTTTTGCTACAGTTGTTGAAGAGTTAGGGCTGTGTCTGATCAGGAGGCATCTGTAGGATTTTGATCTCCAAGGAATTGTGGGTGAGTCACATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29803143 418 + 173848474 GAAGACTGAAC-TTTTGATTGGTCACTCACATGTTTTCTAGCGAGATATAGAATTACATTTACACTCTTTCCTTGCATTTCTTCTATATTAATGATCCCTCTT-----GCAGGAGGTGTAGGAGAAAGAGTGCTGCGTCAGTACAAGAACAAGACTTTTTGGTCAAAAGTTGATACCGTTTAAATTCCCTCTCCCAACGCTTCATGCAAAAAAAAAAA--GGTTACTTCCTGAATTAA-GTTTGTATTTAGTAACCAACATTGACTGGACAGAACATACGTGACTTGGATTCCAAATAAATGAGCTTGCTCTTTTTT-GGGTTTGTACTGTGCAGCTTTTGCTACAGTTGTTGAAGAGTTAGGGCTGTGTCTGATCAGGAGGCATCTGTAGGATTTTGATCTCCAAGGAATTGTGGGTGAGTCACATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5605968 417 +   6154872 GAAGACTGAAC-TTTTGATTGGTCACTCACATGTTTTCTAGCGAGATATATAATTACATTTACACTCTTTCCTTGTATTTCTTCTATATTAATGATCCCTCTT-----GCAAGAGGTGTAGGAGAAAGAGTGCTGCGTCAGTACAAGAACAAGACTTTTT-GTCAAAAGTTGATACCATTTAAATTCCCTCTCCCAACGCTTCATGCAAAAAAAAAAA--GGTTACTTCCTGAATTAAGGTTTGTATTTAGTAACCAACATTGACTGGACAGAACATACGTGACTTGGATTCCAAATAAATGAGCTTGCTCCTTTTT-GGGTTTGTAC-GTGCAGCTCTTGCTACAGTTGTTGAAGAGTTAGGGCTGTGTCCGATCAGGAGGCATCTGTAGGATTTTGATCTCCAAGGAATTGTGGGTGAGTCACATA
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chr6             126612032 421 - 158406734 GAAGGCTGTAC-TTTTAATTGGTTGCTAACATGTTCTCTAGAGAGATATAGAATTACATTTATACTCTTTTCTGGCATTTATTCTATATTAATGGTCCCTCTTATCTTGCAAGAGGTGTGGAAGAAAGAGAGCTGCATCAGTAGAAAGGCAAGACATTTTGGTCAAAAGCTGACACATTTTAAATTCCCCCTCCCAACCTTTCCTGG---AAAAAAAA--AATTACTTCCTTAATTAAGGTTTGTATTTAGTAACCAACATTAACTGGACAGAATACATGTGACTTGGATTCCAAATTAATGAGCTTGCTCTTTTTT-GGGTTTGTACTGTGCAGCTCTTGCTACAGTTGTTGAAAAGTTAGGGCTATGTCTGATTAGGAGACATCGGGAGGATTTTGATCTCCAAGGAATTATGGGTGAGTCACATA
i calJac3.chr6             C 0 C 0
s saiBol1.JH378147           3391194 415 +  17632151 GGAGTCCACACTTTTTGTTTAGTCACCCACATGTTCTGTAGCGAGATACAGAATTGCATTGACACTCTTTTCT----TTTTTTCTATATGAATGATCCCTCTTATATCCCAAGAGGTAGGGGAGAAAGAGGGCTGCATCAGTACAAGGGCAAGAGTTTTTGGTCAAACATTGACATCTTTTAAATACCCTTGCCCACCCCTCCCTGG------AAAAG--AGTTACTTCCTTAATTAGGGTTTCTACTTAATAACCAACATTGACTGGACAGAACGTATGAGATTTGGGTTCCAAGTAGATGAACTTGCTCTTTTCTGGGGTTTGTACAGTAGAGCTCTTGCTACAGGTATTAAGGAGTTAGGACTATGTCCAATCAGGAGGCATCTGTAGGATTTT-ATCTCCAAAAAACTGTGGGTGAGTCACAAA
i saiBol1.JH378147         C 0 C 0
s cebCap1.NW_016107522v1      229030 417 +   3820305 GAAGGCTGCAC-TTTTAATTGGTTGCTCACATGTTCTCTAGAGAGATATAGAATCACATTTATACTCTTTTCTGGCATTTATTCTATATTAATGGTCCCTCTTATCCTGCAAGAGGTGTGGGAGAAAGAGAGCTGCGTCAGTACAAGTACA-----TTTTGGTCAAAAGTTGACACCATTTAAATTCCCTCTCCCAACCTTTCCTGG--AAAAAAAAA--AATTACTTCCTTAATTAAGGTTTGTATTTAGTGACCAACATTGACTGGACAGAATACATGTGACTTGGATTCCAAATACATGAGCTTGCTCTTTTTT-GGGTTTGTATTATGCAGCTCTTGCTACAGCTGTTGAAAAGTTAGGGCTATGTGTGATCAGGAGACATCTGGAGGATTTTGATCTCCAGGGAATTATGGGTGAGTCACATA
i cebCap1.NW_016107522v1   I 360 N 0
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1975652 9246 -   2232465 I
e colAng1.NW_012115566v1     2386238 179 -   3067355 I
e manLeu1.NW_012099655v1      227540 1548 -    352859 I
e chlSab2.chr17             28747677 870 -  71996105 I
e cerAty1.NW_012002711v1      243383 1559 +    766320 I
e macNem1.NW_012011356v1     2480352 179 -   2996164 I
e macFas5.chr4              29492680 171 - 170955103 I
e rheMac8.chr4              29830347 179 + 172585720 I

a score=1808.000000
s hg38.chr6_GL000254v2_alt    592962 2 +   4827813 CA
s panTro5.chr6              29565319 2 + 175400573 CA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29803561 2 + 173848474 CA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5606385 2 +   6154872 CA
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chr6             126612453 2 - 158406734 TA
i calJac3.chr6             C 0 C 0
s saiBol1.JH378147           3391609 2 +  17632151 TA
i saiBol1.JH378147         C 0 I 8
e canFam3.chr35             26144709 15139 +  26524999 I
e otoGar3.GL873742           1975652 9246 -   2232465 I
e colAng1.NW_012115566v1     2386238 179 -   3067355 I
e manLeu1.NW_012099655v1      227540 1548 -    352859 I
e chlSab2.chr17             28747677 870 -  71996105 I
e cerAty1.NW_012002711v1      243383 1559 +    766320 I
e macNem1.NW_012011356v1     2480352 179 -   2996164 I
e macFas5.chr4              29492680 171 - 170955103 I
e rheMac8.chr4              29830347 179 + 172585720 I

a score=115979.000000
s hg38.chr6_GL000254v2_alt    592964 147 +   4827813 ------CCT----------------------GGTGTATTACAggtgggcacctgtaatcccagctacttgggagactgagacagggagaatctcttgaacccgggaggcggaggttgcactgagccaagatcatgccattgcattccagcctgggtgacacagtgagactctgtc
s panTro5.chr6              29565321 147 + 175400573 ------CCT----------------------GGTGTATTACAggtgggcacctgtaatcccagctacttgggaggctgagacagggagaatctcttgaacccgggaggcggaggttgccctgagccaagatcacgccattgcattccagcctgggtgacacagtgacactctgtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              29803563 147 + 173848474 ------CCT----------------------GGTGTATTACAggtgggcacctgtaatcccagctacttgggaggctgagacagggagaatctcttgaacccgggaggcggaggttgccctgagccaagatcacgccattgcattccagcctgggtgacacagtgagactctgtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     5606387 147 +   6154872 ------CCT----------------------GGTGTATTACAggtgggcacctgtaatcccagctacttgggaggctgagacagggagaatctcttgaacccgggaggcagaggttgcactgagccaagatcaccccattgcattccagcctgggtgacacagtgagactctgtc
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chr6             126612455 172 - 158406734 GTTTTGCTTACAAGTGGGcaaaaattaggtgggtgtggt---ggtgggcacctgtaatcctagctacttaggaggctgaggcagggagaatcgcttgaacccaggaggcggagtttgcagtgagccgagattgcaccactgcactccagtccaggtgacacagtgccaccctgtc
i calJac3.chr6             C 0 N 0
e canFam3.chr35             26144709 15139 +  26524999 I
e saiBol1.JH378147           3391611   8 +  17632151 I
e otoGar3.GL873742           1975652 9246 -   2232465 I
e colAng1.NW_012115566v1     2386238 179 -   3067355 I
e manLeu1.NW_012099655v1      227540 1548 -    352859 I
e chlSab2.chr17             28747677 870 -  71996105 I
e cerAty1.NW_012002711v1      243383 1559 +    766320 I
e macNem1.NW_012011356v1     2480352 179 -   2996164 I
e macFas5.chr4              29492680 171 - 170955103 I
e rheMac8.chr4              29830347 179 + 172585720 I

a score=6516.000000
s hg38.chr6_GL000254v2_alt   593111 14 +   4827813 ttgggaaaaaaaa-T
s panTro5.chr6             29565468 15 + 175400573 ttgggaaaaaaaaaT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29803710 14 + 173848474 ttgggaaaaaaaa-T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5606534 14 +   6154872 ttgggaaaaaaaa-T
i gorGor5.CYUI01015250v1   C 0 C 0
e canFam3.chr35            26144709 15139 +  26524999 I
e saiBol1.JH378147          3391611  8 +  17632151 I
e otoGar3.GL873742          1975652 9246 -   2232465 I
e colAng1.NW_012115566v1    2386238 179 -   3067355 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e chlSab2.chr17            28747677 870 -  71996105 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I
e macNem1.NW_012011356v1    2480352 179 -   2996164 I
e macFas5.chr4             29492680 171 - 170955103 I
e rheMac8.chr4             29830347 179 + 172585720 I

a score=935897.000000
s hg38.chr6_GL000254v2_alt   593125 1201 +   4827813 AGAAGTGGGCAGAGTCAAAAAAGCAACTTCAAATAATTAATCCCTTTGTCCATATGAGTTAA-ATACAAACGTGT-----------------ATATTTTAGGTTTTTAAAAATCAATGCAATATGGGAATCAATTTTTTAAAAATTATTTTTTGCTTTTTTTTCTCCTCC----CAGATGCCTTCTGATTGACCTAGTACACTGGGTTAAAAGGGAATTCAAAAACATT-AAAAAAAAGTTCACTGGTTTTGATTCATCTCAGTCTTTTGGCCTGGAGATTAGGCCAAACATCAAGCATGTTGGGAGGGCAACAATTTAAAGCAACATTATTGACTGTAAAGCATTTGCCAGGAATTTACAGTACAAAATGACAGATAACAATTATTGTCATAACACAAGAGAATGGCAAGCAGCTTTGTGTGGTATGAAATTTAAACAGTTCTCAGGGGTTGTCCATTCCTGCAAAAGTTTATGTATCAAGGTGGGCAGAAGGCAATACATTTACACACTACAG---ATGATCCATAGAAAATTAAGCTCCAGAACTCCTAACATCACCAAAGCTGGTACTGGCTAATACTATGAAATGCGAATCTGTG----------------------------CTTTATGCATGTACTGCTCAACAATACTACCACTCAACAGAATCCCCACACTGCAAGGTAGATGCATGGTAGATTAATCTTTGCCCTCTTTTGGAGAGCTTGAAAAATTCCTTAAACTTTTAGAAAGGGTGAAGAAGCAAAATAAAAGAGCTTCTCAAAAAAAAAAAATCTTGAATTATCAATTTTTGACGCTTCGTTGCTCTCTCTGGTAAGCCTCCTCCAGGGGTACTAGATGAGACAGCGTGGGAGCAAACAGGACATCCCAGATTTCTGTGTCCCTTTCCTAACCAAGGGTACCATAGAAACCTGCTCTCTACAGCAAGAGGCCAAAGTGCTTTCTAGAATTTAGT-GCTGAGT-AAACTGAGCCCCT-TCATCTTTAGCTGCTCCCATAATCACTCTAATCCCCTTAATCCCATCAACCTTtatc----atatatatgt------------atatatacatat---------aCACTTATTTACAAGGTTGATAAAAGTATACACACTCAATTTTCAATGCAACACACTCTGCCACAAAAGAAATAGGGTCAAGGTTCTGACATGTCTACAAGTCAAGTGCCATATTGTTACTGGAGACGTATGTAAACCAGTCTTTAGTGTTTGCTATAGAGCACAAAGGCTTGTCATA
s panTro5.chr6             29565483 1198 + 175400573 AGAAGTGGGCAGAGTCAAAAAAGCAACTTCAAATAATTAATCCCTTTGTCCATATGAGTTAA-ACACAAACGTAC-----------------ATATTTTAGGTTTTTAAAAATCAATGCAATATGGGAATCAATTTTTTAAAAATTATTTTTTGCTTTTTTTTCTCCTCT----CAGATGCCTTCTGATTGACCTAGTACACTGGGTTAAAAGGGAATTCAAAAACATT-AAAAAATAGTTCACTGGTTTTGATTCATCTCAGTCTTTTGGCCTGGAGATTAGGCCAAACATCAAGCATGTTGGGAGGGCAACAATTTAAAGCAACATTATTGACTGTAAAGCATTTGCCAGGAATTTACAGTACAAAATGACAGATAACAATTATTGTCATAACACAAGAGAATGGCAAGCAGCTTTGTGTGATATGAAAGTTAAACAGCTCTCAGGGGTTGTCCATTCCTGCAAAAGTTTATGTATCAAGGTGGGCAGAAGGCAATACATTTACACACTACAG---ATGATCCATAGAAAATTAAGCTCCAGAACTGCTAACATCACCAAAGCTGGTATTGGCTAATACTATGAAATGCGAATCTGTG----------------------------CTTTATGCATGTACTGCTCAACAATACTACCACTCAACAGAATCCCCACACTGCAAGGTAGATGCATGGTAGATTAATCTTTGCCCTCTTTTGGAGAGCTTGAAAAATTCCTTAAACTTTTAGAAAGGGTGAAGAAGCAAAATAAAAGAGCTTCTCAAAAAAAAA---TCTTGAATTATCAATTTTTGATGCTTCCTTGCTCTCTCTGGTAAGCCTCCTCCAGGGGTACTAGATGAGACAGTGTGGGAGCAAACAGGACATCCCAGATTTCTGTGTCCCTTTCCTAACCAAGGGTACCATAGAAACCTGCTCTCTACAGCAAGAGGCCAAAGTGCTTTCTAGAATTTAGT-GCTGAGT-AAACTGAGCCCCT-TCATCTTTAGCTGCTCCCATAATCACTCTAATCCCCTTAATCCCATCAACCTTCATC----atatatatgt------------atatatacatat---------aCACTTATTTACAAGGTTGATAGAAGTATACACACTCAATTTTCAACGCAACACACTCTGCCACAAAAGAAATAGGGTCAAGGTTCTGACATGTCTACAAGTCAAGTGCCATATTGTTACTGGAGACGTATGTAAACCAGTCTTTAGTGTTTGCTGTAGAGCACAAAGGCTTGTCATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29803724 1198 + 173848474 AGAAGTGGGCAGAGTCAAAAAAGCAACTTCAAATAATTAATCCCTTTGTCCATATGAGTTAA-ACACAAACGTAC-----------------ATATTTTAGGTTTTTAAAAATCAATGCAATATGGGAATCAATTTTTTAAAAATTATTTTTTGCTTTTTTTTCTCCTCT----CAGATGCCTTCTGATTGACCTAGTACACTGGGTTAAAAGGGAATTCAAAAACATT-AAAAAATAGTTCACTGGTTTTGATTCATCTCAGTCTTTTGGCCTGGAGATTAGGCCAAATATCAAGCATGTTGGGAGGGCAACAATTTAAAGCAACATTATTGACTGTAAAGCATTTGCCAGGAATTTACAGTACAAAATGACAGATAACAATTATTGTCATAACACAAGAGAATGGCAAGCAGCTTTGTGTGGTATGAAAGTTAAACAGCTCTCAGGGGTTGTCCATTCCTGCAAAAGTTTATGTATCAAGGTGGGCAGAAGGCAATACATTTACACACTACAG---ATGATCCATAGAAAATTAAGCTCCAGAACTGCTAACATCACCAAAGCTGGTATTGGCTAATACTATGAAATGCGAATCTGTG----------------------------CTTTATGCATGTACTGCTCAACAATACTACCACTCAACAGAATCCCCACACTGCAAGGTAGATGCATGGTAGATTAATCTTTGCCCTCTTTTGGAGAGCTTGAAAAATTCCTTAAACTTTTAGAAAGGGTGAAGAAGCAAAATAAAAGAGCTTCTCAAAAAAAAA---TCTTGAATTATCAATTTTTGATGCTTCCTTGCTCTCTCTGGTAAGCCTCCTCCAGGGGTACTAGATGAGACAGTGTGGGAGCAAACAGGACATCCCAGATTTCTGTGTCCCTTTCATAACCAAGGGTACCATAGAAACCTGCTCTCTACAGCAAGAGGCCAAAGTGCTTTCTAGAATTTAGT-GCTGAGT-AAACTGAGCCCCT-TCATCTTTAGCTGCTCCCATAATCACTCTAATCCCCTTAATCCCATCAACCTTCATC----atatatatgt------------atatatacatat---------aCACTTATTTACAAGGTTGATAGAAGTATACACACTCAATTTTCAACGCAACACACTCTGCCACAAAAGAAATAGGGTCAAGGTTCTGACATGTCTACAAGTCAAGTGCCATATTGTTACTGGAGACGTATGTAAACCAGTCTTTAGTGTTTGCTGTAGAGCACAAAGGCTTGTCATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5606548 1199 +   6154872 AGAAGTGGGCAGAGTCAAAAAAGCAACTTCAAATAATTAATCCCTTTGTCCATATGAGTTAA-ATACAAACGTAC-----------------ATATTTTAGGTTTTTAAAAATCAATGCAATATGGGAATCAATTTTTTAAAAATTATTTTTTGCTTTTTTTTCTCCTCC----CAGATGCCTTCTGATTGACCTAGTACACTGGGTTAAAAGGGAATTCAAAAACATT-AAAAAAAAGTTCACTGGTTTTGATTCATCTCAGTCTTTTGGCCTGGAGATTAGGCCAAACATCAAGCATGTTGGGAGGGCAACAATTTAAAGCAACATTATTGACTGTAAAGCATTTGCCAGGAATTTACAGTACAAAATGACAGATAACAATTATTGTCATAACACAAGAGAATGGCAAGCAGCTTTGTGTGGTATGAAAGTTAAACAGCTCTCAGGGGTTGTCCATTCCTGCAAAAGTTTATGTATCAAGGTGGGCAGAAGGCAATACATTTACACACTACAG---ACGATCCATAGAAAATTAAGCTCCAGAACTGCTAACATCACCAAAGCTGGTACTGGCTAATACTATGAAATGCATATCTGTG----------------------------CTTTATGCATGTACTGCTCAACAATACTACCACTCAACAGAATCCCCACACTGCAAGGTGGATGCATGGTAGATTAATCTTTGCCCTCTTTTGGAGAGTTTGAAAAATTCCTTAAACTTTTAGAAAGGGTGAAGAAGCAAAAT-AAAGAGCTTCTCAAAAAAAAA-AATCTTGAATTATCAATTTTTGACGCTTCCTTGCTCTCTCTGGTAAGCCTTCTCCAGGGGTACTAGATGAGACAGTGTGGGAGCAAACAGGACATCCCAGATTTCTGTGTCCCTTTCCTAACAAAGGGTACCATAGAAACCTGCTCTCTACAGCAAGAGGCCAAAGTGCTTTCTAGAATTTAGT-GCTGAGT-AAACTGAGCCCCT-TCATCTTTAGCTGCTCCCATAATCACTCATATCCCCTTAATCCCATCAACCTTCATC----atatatatgt------------atatatacatat---------aCACTTATTTACAAGGTTGATAAAAGTATACACACTCAATTTTCAACGCAACACACTCTGCCACAAAAGAAATAGGGTCAAGGTTCTGACATGTCTACAAGTCAAGTGCCATATTGTTACTGGAAACGTATATAAACCAGTCTTTAGTGTTTGCTATAGAGCACAAAGGCTTGTCATA
i gorGor5.CYUI01015250v1   C 0 C 0
s saiBol1.JH378147          3391619 1249 +  17632151 AGAAGTAGGCAGAGTCAAAAAAGCAACTTCAAGTAATTGATTTCTTTGTCCGGAAGAGTTAATACATTAGTGTATGCAGGACTTATTTTGTAATATTTTAGGATTTTGAAAAACAATGGAATATGAAAATCGGTTTTTTAA----TTTTGTTTATTTTTTCTTTCCCCCCTTGTCTGATGCCTCCTGATTAACCTAGTACACAGGGTTAAAAGGGAATT-AAAAACATTAAAAAAATAGTTCACTAGCTTTGATTCATC----TCCTTTTGCCAGGAGATCAGGCCAAATATCAAGCATGTTGGGAGGGGCACAATTTAAAGCAAGACTATTGACTGTAAAACATTTGCCAGCAATTTACAGTGCAAAATGACAGATAACAAATCTTGTCACAACACAAGAGGATGGCAAGCAGCTTTGTAT--CATGAAAGTT-AGCAGCTCTCA--GGTTGCCCATTCCTAAAAAAGTTTATGTATCAATGTGGGCAGAGGGCAACAGTTTTGGACATTAAAGGAAATGATCCACAGAAAATTAAGCTCCAGAACTGCTATCGTTATGAAAGCTGATACTGGATAATATTCTGAAATGCAAATCTGTGatatatatatatatatacatatatatatatatatatatataCTGCTCAACGTCTCTGTCACTCAAACGAATTCCCAAACTGCAA-----------AGTAGAATAATCTTTGCCCCCTTTTGCAGAGCTTGAAATGTTCCTCAAACTTTTAGAAAGGGGAAAGAAGCAAAAT--CAGAGCTTCTAAAAAAAAAA--ATCTTGAATTATTAA----TGATGCTTCCTTGCTCTCTCTTGTAAACCTACTCCAAAGGTCCTAGATGAGATAATGTGGCAGCAAACAGTACATCCCAGATTTCTGGGTCCCTTTACTGACACAGGGTACCATAGAAATCTTCTCTCTACAGCAAGAGGTCAAAGTACTTTCTAGGATTTAGTAAATCAGTAAAACTGAGCCCCTCTCATCTTTAGCT-CCGCCACAATCACTCTAATCCCCTTAATCCCAGCAACTTTCATCCAAAATACATATGTGTGTGTGTACACATATATACATATGAACCCAGAAAACTTATTTATAAAGTTTATGCATGTATACACACCCAATTTTCCATGGTACACACTTTGCCGCAGAGGAAAGAGGCTCCAGGCTCTGACATGTCTGCACATTAGTTGCCATACTGCTATGGGAGGCGTGCGTAAATCAGTCTTTAGTGTCTGCTATAGAGCACAAAGGTTTGTAATA
i saiBol1.JH378147         I 8 I 675
e canFam3.chr35            26144709 15139 +  26524999 I
e otoGar3.GL873742          1975652 9246 -   2232465 I
e colAng1.NW_012115566v1    2386238  179 -   3067355 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e chlSab2.chr17            28747677  870 -  71996105 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I
e macNem1.NW_012011356v1    2480352  179 -   2996164 I
e macFas5.chr4             29492680  171 - 170955103 I
e rheMac8.chr4             29830347  179 + 172585720 I

a score=-96.000000
s hg38.chr6_GL000254v2_alt   594326 1 +   4827813 A
s panTro5.chr6             29566681 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29804922 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5607747 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
e canFam3.chr35            26144709 15139 +  26524999 I
e saiBol1.JH378147          3392868 675 +  17632151 I
e otoGar3.GL873742          1975652 9246 -   2232465 I
e colAng1.NW_012115566v1    2386238 179 -   3067355 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e chlSab2.chr17            28747677 870 -  71996105 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I
e macNem1.NW_012011356v1    2480352 179 -   2996164 I
e macFas5.chr4             29492680 171 - 170955103 I
e rheMac8.chr4             29830347 179 + 172585720 I

a score=60764.000000
s hg38.chr6_GL000254v2_alt   594327 76 +   4827813 GGCTCCTCCAATGATAGACTGCT-TTTCCTTTGGGAGCATTGATGTTTTATCTACTCAGACCAGAATAAATTTTTAC
s panTro5.chr6             29566682 76 + 175400573 GGCTCCTCCAATGATAGACTGCT-TTTCCTTTGGGAGCATTGATGTTTTATCTACTCAGACCAGAATAAATTTTTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29804923 76 + 173848474 GGCTCCTCCAATGATAGACTGCT-TTTCCTTTGGGAGCATTGATGTTTTATCTACTCAGACCAGAATAAATTTTTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5607748 76 +   6154872 GGCTCCTCCAATGATAGACTGCT-TTTCCTTTGGGAGCATTGATGTTTTATCTACTCAGACCAGAACAAATTTTTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s saiBol1.JH378147          3393543 76 +  17632151 GGTTCCTGAAATGATAGTCTGCTCTTTCCTTTGGGAGTGATGATGTTTTATCTACTCAGCCTAGAG-AAATTTTTAC
i saiBol1.JH378147         I 675 C 0
e canFam3.chr35            26144709 15139 +  26524999 I
e otoGar3.GL873742          1975652 9246 -   2232465 I
e colAng1.NW_012115566v1    2386238 179 -   3067355 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e chlSab2.chr17            28747677 870 -  71996105 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I
e macNem1.NW_012011356v1    2480352 179 -   2996164 I
e macFas5.chr4             29492680 171 - 170955103 I
e rheMac8.chr4             29830347 179 + 172585720 I

a score=168966.000000
s hg38.chr6_GL000254v2_alt   594403 301 +   4827813 TTGGAATTATTATTAttttgagacggagtcttgctctgttgcccaggctggagtgcaatggcacgatctcagttcaccgcaatttccgcctcccaggttcaagcaattctcttgccccagcctcccaagtagctgggattacaggcacctgccaccacgcctggctaatttttttgtattcttagtaaagacagggtttcactgtgttggtcaggctggtctcaagatcctgacctcagataatctatctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccatgcccTG
s panTro5.chr6             29566758 301 + 175400573 TTGGAATTATTATTAttttgagacagagtcttgctctgttgcccaggctggagtgcaatggcatgatctcagttcactgcaatttccgcctcccaggttcaagcaattctcttgccccagcctcccaagtagctgggattacaggcacctgccaccacgcctggctaatttttttgtatttttagtaaagacagggtttcactgtgttggtcaggctggtctcgagatcctgacctcagataatctatctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccatgcccTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29804999 301 + 173848474 TTGGAATTATTATTAttttgagacagagtcttgctctgttgcccaggctggagtgcaatggcatgatctcagttcactgcaatttccgcctcccaggttcaagcaattctcttgccccagcctcccaagtagctgggattacaggcacctgccaccacgcctggctaatttttttgtatttttagtaaagacagggtttcactgtgttggtcaggctggtctcgagatcctgacctcagataatctatctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccatgcccTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5607824 301 +   6154872 TTGGAATTATTATTAttttgagacggagtcttgctctgtttcccaggctggagtgcaatggcacgatctcagttcaccgcaatttccgcctcccaggttcaagcaattctcttgccccagcctcccaagtagctgggattacaggcacctgcaaccacgcctggctaatttttttgtatttttagtaaagacagggtttcactgtgttggtcaggctggtctcgagatcctgacctcagataatctatctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccatgcccTG
i gorGor5.CYUI01015250v1   C 0 C 0
e canFam3.chr35            26144709 15139 +  26524999 I
e saiBol1.JH378147          3393619   0 +  17632151 C
e otoGar3.GL873742          1975652 9246 -   2232465 I
e colAng1.NW_012115566v1    2386238 179 -   3067355 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e chlSab2.chr17            28747677 870 -  71996105 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I
e macNem1.NW_012011356v1    2480352 179 -   2996164 I
e macFas5.chr4             29492680 171 - 170955103 I
e rheMac8.chr4             29830347 179 + 172585720 I

a score=86685.000000
s hg38.chr6_GL000254v2_alt   594704 110 +   4827813 TTGGGATTTTTTT-AATACATGTGTTTACAGTGTGGATGAACTGCAGCTGCATATCAACTCCTCCAATATAAAGAAAAAGAAAATGGTATTTAAC-TGACTAATAAGTTTCA
s panTro5.chr6             29567059 111 + 175400573 TTGGGATTTTTTTTAATACATGTGTTTACAGTGTGGATGAACTGCAGCTGCATATCAACTCCTCCAATATAAAGAAAAAGAAAATGGTATTTAAC-TGACTAATAAGTTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29805300 110 + 173848474 TTGGGATTTTTTT-AATACATGTGTTTACAGTGTGGATGAACTGCAGCTGCATATCAACTCCTCCAATATAAAGAAAAAGAAAATGGTATTTAAC-TGACTAATAAGTTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5608125 110 +   6154872 TTGGGATTTTTTT-AATACATGTGTTTACAGTGTGGATGAACTGCAGCTGCATATCAACTCCTCCAATATAAAGAAAAAGAAAATGGTATTTAAC-TGACTAATAAGTTTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s saiBol1.JH378147          3393619 111 +  17632151 TTGGGATTTTAAAAAATACATGTATTTACAGTTGGAATGAACTGCAGTTGCGTATCAACTCATCC-ACATAAAGAAAAAGAAAACGGTGTTTAACATTACTAATAAGTTTCG
i saiBol1.JH378147         C 0 C 0
e canFam3.chr35            26144709 15139 +  26524999 I
e otoGar3.GL873742          1975652 9246 -   2232465 I
e colAng1.NW_012115566v1    2386238 179 -   3067355 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e chlSab2.chr17            28747677 870 -  71996105 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I
e macNem1.NW_012011356v1    2480352 179 -   2996164 I
e macFas5.chr4             29492680 171 - 170955103 I
e rheMac8.chr4             29830347 179 + 172585720 I

a score=835302.000000
s hg38.chr6_GL000254v2_alt   594814 306 +   4827813 TCTACCAGCTCTGGGCTTCAGTATTGGGTAGAAAGAAAACAGAGA--CTTCACCCTAAAACCAAAATTAAAAGACAA--AAATTTTTT-----------------AAAGAATAAAGGAAAGAAAGAGT-ACTACTGTTGATTCTTTGGTCTGTGTCTAAAAGATGATATTCTGAATA-ACTCAGAGCATACAGCACTTCACACAAATGAGTAATAAGCTCCTCAGGCTTAAAAAAAAAATGGATGACTAGGGAGAAGTTGAAATGTCCTCGAGAGTCAGATGTTGGAGAATTTTGAAATAATAGACAAGCTTTTGTGTTCATTAAGATT
s panTro5.chr6             29567170 307 + 175400573 TCTACCAGCTCTGGGCTTCAGTATTGGGTAGAAAGAAAACAGAGAGACTTCACCCTAAAACCAAAATGAAAAGACAA--AAATTTTTT-----------------AAAGAATAAAGGAAAGAAAGAGT-ACTACTGTTGATTCTTTGGTCTGTGTCTAAAAGATGATATTCTGAATA-TCTCAGAGCATACAGCACTTCACACAAATGAGTAATAAGCTCCTCAGGCTTAAAAAAAAA-TGGATGACTAGGGAGAAGTTGAAATGTCCTCGAGAGTCAGATGTTGGAGAATTTTGAAATAATAGACAAGCTTTTGTGTTCATTAAGATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29805410 308 + 173848474 TCTACCAGCTCTGGGCTTCAGTATTGGGTAGAAAGAAAACAGAGAGACTTCACCCTAAAACCAAAATGAAAAGACAA--AAATTTTTT-----------------AAAGAATAAAGGAAAGAAAGAGT-ACTACTGTTGATTCTTTGGTCTGTGTCTAAAAGATGATATTCTGAATA-TCTCAGAGCATACAGCACTTCACACAAATGAGTAATAAGCTCCTCAGGCTTAAAAAAAAAATGGATGACTAGGGAGAAGTTGAAATGTCCTCGAGAGTCAGATGTTGGAGAATTTTGAAATAATAGACAAGCTTTTGTGTTCATTAAGATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5608235 307 +   6154872 TCTACCAGCTCTGGGCTTCAGTATTGGGTAGAAAGAAAACAGAGAGACTTCACCCTAAAACCAAAATGAAAAGACAA--AAATTTTTT-----------------AAAGAATAAAGGAAAGAAAGAGT-ACTACTGTTGATTCTTTGGTCTGTGTCTAAAAGATGATATTCTGAATA-TCTCAGAGCATACAGCACTTCACACAAATGAGTAATGAGCTCTTCAGGCTTAAAAAAAAA-TGGATGACTAGGGAGAAGTTGAAATGTCCTCGAGAGTCAGATGTTGGAGAATTTTGATATAATAGACAAGCTTTTGTGTTCATTAAGATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29830526 303 + 172585720 TCTACCAGCTCTGGGCTTGAGTACTGGGTAGAAAGAAAAGAGAGAGACTTCACTCTAAAACCAAAACGAAAAGACAA--ATTTTTTTT-----------------AAAGAATAAAGGAAAGA---GTT-ACTATGGTTGATTCCTTGGTCTGTGTCTAAAAGATGATATTCTGAATA-TCTCAGAGCATATACCACTTCACACAAATGAGTAATAAGCTCTTCAGGCTTAAAAGAAA--TGGATGATTAGGGAGAAGTTGAAATGTCCTTGAGAGTTAGGTGTTGGAGAATTTTGAAATCACAGACAAGCTTTTGTGTTCATTAAGATT
i rheMac8.chr4             I 179 C 0
s macFas5.chr4             29492851 302 - 170955103 TCTACCAGCTCTGGGCTTGAGTACTGGGTAGAAAGAAAAGAGAGAGACTTCACTCTAAAACCAAAACGAAAAGACAA---TTTTTTTT-----------------AAAGAAAAAAGGAAAGA---GTT-ACTATGGTTGATTCCTTGGTCTGTGTCTAAAAGATGATATTCTGAATA-TCTCAGAGCATATACCACTTCACACAAATGAGTAATAAGCTCTTCAGGCTTAAAAGAAA--TGGATGATTAGGGAGAAGTTGAAATGTCCTTGAGAGTTAGGTGTTGGAGAATTTTGAAATCACAGACAAGCTTTTGTGTTCATTAAGATT
i macFas5.chr4             I 171 C 0
s macNem1.NW_012011356v1    2480531 305 -   2996164 TCTACCAGCTCTGGGCTTGAGTACTGGGTAGAAAGAAAAGAGAGAGACTTCACTCTAAAACCAAAACGAAAAGACAATTTTTTTTTTT-----------------AAAGAAAAAAGGAAAGA---GTT-ACTATGGTTGATTCCTTGGTCTGTGTCTAAAAGATGATATTCTGAATA-TCTCAGAGCATATACCACTTCACACAAATGAGTAATAAGCTCTTCAGGCTTAAAAGAAA--TGGATGATTAGGGAGAAGTTGAAATGTCCTTGAGAGTTAGGTGTTGGAGAATTTTGAAATCATAGACAAGCTTTTGTGTTCATTAAGATT
i macNem1.NW_012011356v1   I 179 C 0
s colAng1.NW_012115566v1    2386417 305 -   3067355 TCTACCAGCTCTGGGCTTGAGTATTGGGTAGAAAGAAAAGAGAGAGACTTCACTTTAAAACCAAAACGAAAAGACAA---ATTTTTTT-----------------AAAGCAAAAAGGAAAGAGTTGTT-ACTATGGTTGATTCCTTGGTCTGGGTCTAAAAGATGATATTCTGAATA-TCTCAGAGCATATACCACTTCACACAAATGAGTAATAAGCTCTTCAGGCTTAAAAAAAA--TGGATGATTAGGGAGAAGTTGAAATGTCCTCGAGAGTTAGGTGTTGGAGAATTTTGAAATCATAGACAAGCTTTTGTGTTCATTAAGATT
i colAng1.NW_012115566v1   I 179 C 0
s saiBol1.JH378147          3393730 318 +  17632151 TTCTCCAGCCCTGGGCTTGAGTATTGGGTAGAAAGGGAAG-----GACTTCAACTTGAAACCACAATGAAAAGACAA--CTTTTTTTTTTTTTTAACAGAAaaagaaagaaaaaaggaaagaaagaGTGACTATTGTTGATTCCTTAG---GCATCTAAAAGATAATACTCTGAATAGTCTCACGGCATACAGCACTTCGCACAAATAATTAATAAGCTCTTCAGGCTTAAAAAACAGGTGAGTCATCAGGGAGAAGTTGCAACG-CATCGAGAGTCAGCTGTCGGAGAATTTTGAAATCATCGACAAGCTTGTGTGTTCATTAAGATT
i saiBol1.JH378147         C 0 C 0
e canFam3.chr35            26144709 15139 +  26524999 I
e otoGar3.GL873742          1975652 9246 -   2232465 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e chlSab2.chr17            28747677 870 -  71996105 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=168187.000000
s hg38.chr6_GL000254v2_alt   595120 47 +   4827813 CTTCTCTTTTTAGGGTTTCTCCCCTTCTTTCTTTTCCTTTCCTGTCC
s panTro5.chr6             29567477 47 + 175400573 CTTCTCTTTTTAGGGTTTCTCCCCTTCTTTCTTTTCCTTTCCTGTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29805718 47 + 173848474 CTTCTCTTTTTAGGGTTTCTCCCCTTCTTTCTTTTCCTTTCCTGTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5608542 47 +   6154872 CTTCTCTTTTTAGGGTTTCTCCCCTTCTTTCTTTTCCTTTCCTGTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29830829 47 + 172585720 CTTCTCTTTATAGGGTTTCTCCCCTTCTTTCTTTTCCTTCCCTGTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29493153 47 - 170955103 CTTCTCTTTATAGGGTTTCTCCCCTTCTTTCTTTTCCTTCCCTGTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2480836 47 -   2996164 CTTCTCTTTATAGGGTTTCTCCCCTTCTTTCTTTTCCTTCCCTGTCC
i macNem1.NW_012011356v1   C 0 C 0
s colAng1.NW_012115566v1    2386722 47 -   3067355 CTTCTCTTTATAGGGTTTCTCCCCTTCTTTCTTTTCCTTCCCTGTCC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378147          3394048 47 +  17632151 CTTCTCTTTTTAGGGTTTCTCCCCTTCTTTCTTTTCCTTCCTTGTCT
i saiBol1.JH378147         C 0 C 0
s otoGar3.GL873742          1984898 47 -   2232465 CTTCTCTTCTTAGAACTTCTATAATTTTTACCTTTTCATTTCTTTCC
i otoGar3.GL873742         I 9246 I 3707
e canFam3.chr35            26144709 15139 +  26524999 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e chlSab2.chr17            28747677 870 -  71996105 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=6003117.000000
s hg38.chr6_GL000254v2_alt   595167 2052 +   4827813 CCTTTCCCCAGAAAACATTTTTTTAAAACCAGCAGTTAGTGCAACTAATGTTCACTTAGCATACAGTGCAAACAGATGG---AACAAAAAAAAAGGAAT--ATTCCTTCTTTTCAGCTTTT-TTCTCTTCACCAGTTAAAAAAGG---AAAAAAAAAATTCTGAACTCTTTTAAGTCTTCATAGTTCTGAAATAAAAGATGAAAAACTCACAAAGAGAAGAGCACTCCTCTCTAAAAAATGGTATGTCATAGATCCAAACAAGGCTTCCACAGTTTGTCAAAGAGTGCTTATTAAGGCTTCTCATTTTCTACAGCCTTGCTGTGGAATTCTGCCACATGCAGGCTCTTGTCAATGTTGCTTGGAATAGGTTTTATTTCTTTTCCCAGCTGCTCCTCAATACCTTTCAGGTTGAAGTGATCGCCATATGTGATCAAGTTGATGGCTAAGCCAAAATGGCCAAAGTGACCTGGTCTTCCAATATGACGGAGATAGGTCTCTTCTAGCTTTGAAAAGTCAAAGTTTATTACCACATTCACAGCTTGTATATCAATACCTCAAGTAAACAGATCAGTGCAAATGAGA-------ATAAGCCATTTC-AGAAATAATAAAATACACAATTTTGATGTTCCTGCCTCATTTTAGCATGAATGTAGAAACAAAAATAACCCAGTTGAGAAATTTTGGCTGGCCATTCAACTCGCTGAGAGCAGTTAAAGAAAATGATCATCTGGTTTAGCTGAAGCCTGGAGAAAAGTGTGGTGAGGCCGTGTACTTTTTGGTGCTCAGTTACATATGCGTAGTACTGGGTTATGTCCTTCAGAGTTAGTTTTTCCATCAGGTTAGTCTCA-GGGTTTCTGCAAATGGGAATTCATGAACTTCTGTATACTAAGAGGGAAAGTAGCAGAATGTAGTAAAATCTGCCTGTCTTCAGGTAGCATGAGAATAATATCTTCCATTAACTGCCCAAAATCCTGGGACAGAAACTTATCTGC---CTCATCCAATACTATCACCTGG---ACATGACTGACCTTTGCTACTCCTTTCTTAATAAGATTCAGGATTCTCCCAGGGGCAGCAATCACCATGTGCACTGTATCATCCAGCCTCAGTACGTCATCTCCTGAATTGGTTCCTCCTGTGGTCATCACCACTTTGACTCCTCCCATGTGTTTGCTGACCTGGATGCAAATTTGACTGACCTGTAGAGCAGGTCCTCCTGTGGGAACAATCACTATTGTTTGTATAGTGTCCTTCTTCAGGTCTAGCCTTTTAAGTAGGGGAATGTCATGGGCACTGCTCTTGCCTGTTCCA--TTTTTTGCTCTAGCTAAGATATCCCTACCAGATAAAGCAATGGGAATGCTCTCTTCTTGGAAAGGAGATGGCTTTTTCCATCCCATTTCAAAAATTCTCATCAGTAACTGCCGTTTCAAACAGTAATCTTCAAATTAATATCCTCTTGTAGAGGTCACATCCAACATTTTGATTCTTAGATCCTTTGGAAGGAGTTTTAAAGTCTTCTTCCAATTATCACCAGGCTTAATAGTGGTGGTCATACTCTGCGCTTGTGGTTGAGTGCTATT----ATTGTGTTGGTG--TTTTTCAGCTGGTTCGTCTGTTGCTGTGTCTGTGTGGCCTCTCCTCTAGGGCCACCACTGGGTTTCAGGGGACCCCTCAGCTGACCATTTTGACTGGA-CAGACCCATTA-TAACAGCGTTCTCTGTTCTGGTTGTGCTCATGCTGTGTTAATTGCAAAGGTGTCTTTCAAACTTCAAAACGTTTGAAAGTCAATAGAGAAACTGTAATAATAGTTTATTAGGCTGTCCAAAGTGAAGAGATAAATATAGGTCTTGCTCAATAATTAAGTTCTTTTATTATAATGCAGGCAAGCACCCGTAAGTCTCTGAATGGTAAGCAGCAGTAACTTACTTTCTTGTACTGTATCAACTTTTAATTTTTAAAAGGCCCTCTTACCAGCTTCAATTATAGCTGAATTCACTTACTTCAATCACTGAGGCCACTCCTGTGCTGGACACTCTTGGTCCTTTATTGTTGACTGGAAACTCCCAAAAT
s panTro5.chr6             29567524 2052 + 175400573 CCTTTCCCCAGAAAACATTTTTTTAAAACCAGCAGTTAGTGCAACTAATGTTCACTTAGCATACAGTGCAAACAGATGG---AACAAAAAAAAAGGAAT--ATTCCTTCTTTTCAGCTTTT-TTCTCTTCACCAGTTAAAAAAGG---AAAAAAAAAATTCTGAACTCTTTTAAGTCTTCATAGTTCTGAAATAAAAGATGAAAAACTCACAAAGAGAAGAGCACTCCTCTCTAAAAAATGGTATGTCATAGACCCAAACAAGGCTTCCACAGTTTGTCAAAGAGTGCTTATTAAGGCTTCTCATTTTCTACAGCCTTGCTGTGGAATTCTGCCACATGCAGGCTCTTGTCATTGTTACTTGGAATAGGTTTTATTTCTTTTCCCAGCTGCTCCTCAATACCTTTCAGGTTGAAGTGATCACCATATGTGATCAAGTTGATGGCTAAGCCAAAATGGCCAAAGCGACCTGGTCTTCCAATATGACGGAGATAGGTCTCTTCTAGCTTTGAAAAGTCAAAGTTTATTACCACATTCACAGCTTGTATATCAATACCTCAAGTAAACAGATCAGTGCAAATGAGA-------ATAAGCCATTTC-AGAAGTAATAAAATACACAATTTTGATGTTCCTGCCTCATTTTAGCATGAACGTAGAAACAAAAATAACCCAGTTGAGAAATTTTGGCTGGCCATTCAACTCGCTGAGAGCAGTTAAAGAAAATGATCATCTGGTTTAGCTGAAGCCTGGAGAAAAGTGTGGTGAGGCCGTGTACTTTTTGGTGCTCAGTTACATATGCATAGTACTGGGTTATGTCCTTCAGAGTTAGTTTTTCCATCAGGTTAGTCTCA-GGGTTTCTGCAAATGGGAATTCATGAACTTCTGTATACTAAGAGGGAAAGTAGCAGAATATAGTAAAATCTGCCTGTCTTCAGGTAGCATGAGAATAATATCTTCCATTAACTGCAGAAAATCCTGGGACAGCAACTTATCTGC---CTCATCCAATACTATCACCTGG---ACATGACTGACCTTTGCTACTCCTTTCTTAATAAGATTCAGGATTCTCCCAGGGGCAGCAATCACCATGTGCACTGTATCATCCAGCCTCAGTACGTCATCTCCTGAATTGGTTCCTCCTGTGGTCATCACCACTTTGACTCCTCCCATGTGTTTGCTGACCTGGATGCAAATTTGACTGACCTGTAGAGCAGGTCCTCCTGTGGGAACAATCACCATTGTTTGTATAGTGTCCTTCTTCAGGTCTAGCCTTTTAAGTAGGGGAATGTCATGGGCACTGCTCTTGCCTGTTCCA--TTTTTTGCTCTAGCTAAGATATCCCTACCAGATAAAGCAATGGGAATGCTCTCTTCTTGGAAAGGAGATGGCTTTTTCCATCCCATTTCAAAAATTCTCATCAGTAACTGCCGTTTCAAACAGTAATCTTCAAGTTAATTTCCTCTTGTGGAGGTCACATCCAACATTTTGATTCTTAGATCCTTTGGAAGGAGTTTTAAAGTCTTTTTCCAGTTATCACCAGGCTTAATAGTGGTGGTCATACTCTGCGCTTGTGGTTGAGTGCTATT----ATTGTGTTGGTG--TTTTTCAGCTGGTTCGTCTGTTGCTGTGTCTGTGTGGCCTCTCCTCTAGGGCCACCACTGGGTTTCACGGGACCCCTCAGCTGACCATTTTGACTGGA-CAGACCCATTA-TAACAGCGTTCTCTGTTCTGGTTGTGCTCATGCTGTGTTAATTGCAAAGGTGTCTTTCAAACTTCAAAACGTTTGAAAGTCAGTAGAGAAACTGTAATAATAGTTTATTAGGCTGTCCAAAGTGAAGAGATAAATATAGGTCTTGCTCAATAATTAAGTTCTTTTATTATAATGCAGGCAAGCACCCGTAAGTCTCTGAATGGTAAGCAGCAGTAACTTGCTTTCTTGTACTGAATCAACTTTTAATTTTTAAAAGGCCCTCTTACCAGCTTCAATTATAGCTGAATTCACTCACTTCAATCACTGAGGCCACTCCTGTGCTGGACACTCTTAGTCCTTTATTGTTGACTGGAAACTCCCAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29805765 2050 + 173848474 CCTTTCCCCAGAAAACATTTTTTTAAAACCAGCAGTTAGTGCAACTAATGTTCACTTAGCATACAGTGCAAACAGATGG---AAC-AAAAAAAAGGAAT--ATTCCTTCTTTTCAGCTTTT-TTCTCTTCACCAGTTAAAAAAGG----AAAAAAAAATTCTGAACTCTTTTAAGTCTTCATAGTTCTGAAATAAAAGATGAAAAACTCACAAAGAGAAGAGCACTCCTCTCTAAAAAATGGTATGTCATAGACCCAAACAAGGCTTCCACAGTTTGTCAAAGAGTGCTTATTAAGGCTTCTCATTTTCTACAGCCTTGCTGTGGAATTCTGCCACATGCAGGCTCTTGTCATTGTTACTTGGAATAGGTTTTCTTTCTTTTCCCAGCTGCTCCTCAATACCTTTCAGGTTGAAGTGATCACCATATGTGATCAAGTTGATGGCTAAGCCAAAATGGCCAAAGTGACCTGGTCTTCCAATATGACGGAGATAGGTCTCTTCTAGCTTTGAAAAGTCAAAGTTTATTACCACATTCACAGCTTGTATATCAATACCTCAAGTAAACAGATCAGTGCAAATGAGA-------ATAAGCCATTTC-AGAAGTAATAAAATACACAATTTTGATGTTCCTGCCTCATTTTAGCATGAACGTAGAAACAAAAATAACCCAGTTGAGAAATTTTGGCTGGCCATTCAACTCGCTGAGAGCAGTTAAAGAAAATGATCATCTGGTTTAGCTGAAGCCTGGAGAAAAGTGTGGTGAGGCCGTGTACTTTTTGGTGCTCAGTTACATATGCATAGTACTGGGTTATGTCCTTCAGAGTTAGTTTTTCCATCAGGTTAGTCTCA-GGGTTTCTGCAAATGGGAATTCATGAACTTCTGTATACTAAGAGGGAAAGTAGCAGAATATAGTAAAATCTGCCTGTCTTCAGGTAGCATGAGAATAATATCTTCCATTAACTGCAGAAAATCCTGGGACAGCAACTTATCTGC---CTCATCCAATACTATCACCTGG---ACATGACTGACCTTTGCTACTCCTTTCTTAATAAGATTCAGGATTCTCCCAGGGGCAGCAATCACCATGTGCACTGTATCATCCAGCCTCAGTACGTCATCTCCTGAATTGGTTCCTCCTGTGGTCATCACCACTTTGACTCCTCCCATGTGTTTGCTGACCTGGATGCAAATTTGACTGACCTGTAGAGCAGGTCCTCCTGTGGGAACCATCACCATTGTTTGTACAGTGTCCTTCTTCAGGTCTAGCCTTTTAAGTAGGGGAATGTCATGGGCACTGCTCTTGCCTGTTCCA--TTTTTTGCTCTAGCTAAGATATCCCTACCAGATAAAGCAATGGGAATGCTCTCTTCTTGGAAAGGAGATGGCTTTTTCCATCCCATTTCAAAAATTCTCATCAGTAACTGCCGTTTCAAACAGTAATCTTCAAGTTAATTTCCTCTTGTGGAGGTCACATCCAACATTTTGATTCTTAGATCCTTTGGAAGGAGTTTTAAAGTCTTTTTCCAGTTATCACCAGGCTTAATAGTGGTGGTCATACTCTGCGCTTGTGGTTGAGTGCTATT----ATTGTGTTGGTG--TTTTTCAGCTGGTTCGTCTGTTGCTGTGTCTGTGTGGCCTCTCCTCTAGGGCCACCACTGGGTTTCACGGGACTCCTCAGCTGACCATTTTGACTGGA-CAGACCCATTA-TAACAGCGTTCTCTGTTCTGGTTGTGCTCATGCTGTGTTAATTGCAAAGGTGTCTTTCAAACTTCAAAACGTTTGAAAGTCAGTAGAGAAACTGTAATAATAGTTTATTAGGCTGTCCAAAGTGAAGAGATAAATATAGGTCTTGCTCAATAATTAAGTTCTTTTATTATAATGCAGGCAAGCACCCGTAAGTCTCTGAATGGTAAGCAGCAGTAACTTGCTTTCTTGTACTGAATCAACTTTTAATTTTTAAAAGGCCCTCTTACCAGCTTCAATTATAGCTGAATTCACTCACTTCAATCACTGAGGCCACTCCTGTGCTGGACACTCTTGGTCCTTTATTGTTGACTGGAAACTCCCAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5608589 2051 +   6154872 CCTTTCCCCAGAAAACATTTTTTTAAAACCAGCAGTTAGTGCAACTAATGTTCACTTAGCATACAGTGCAAACAGATGG---AACAAAAAAAAAGGAAT--ATTCCTTCTTTTCAGCTTTT-TTCTCTTCACCAGTTAAAAAAGG----AAAAAAAAATTCTGAACTCTTTTAAGTCTTCATAGTTCTGAAATAAAAGATGAAAAACTCACAAAGAGAAGAGCACTCCTCTCTAAAAAATGGTATGTCATAGATACAAACAAGGCTTCCACAGTTTGTCAAAGAGTGCTTATTAAGGCTTCTCATTTTCTACAGCCTTGCTGTGGAATTCTGCCACATGCAGGCTCTTGTCAATGTTGCTTGGAATAGGTTTTATTTCTTTTCCCAGCTGCTCCTCAATACCTTTCAGGTTGAAGTGATCACCATATGTGATCAAGTTGATGGCTAAGCCAAAATGGCCAAAGTGACCTGGTCTTCCAATATGATGGAGATAGGTCTCTTCTAGCTTTGAAAAGTCAAAGTTTATTACCACATTCACAGCTTGTATATCAATACCTCAAGTAAGCAGATCAGTGCAAATGAGA-------ATAAGCCATTTC-AGAAATAATAAAATACACAATTTTGATGTCCCTGCCTCATTTTAGCATGAATGTAGAAACAAAAATAACCCAGTTGAGAAATTTTGGCTGGCCATTCAACTCGCTGAGAGCAGTTAAAGAAAATGATCATCTGGTTTAGCTGAAGCCTGAAGAAAAGTGTGGTGAGGCCGTGTACTTTTTGGTGCTCGGTTACATATGCGTAGTACTGGGTTATGTCCTTCAGAGTTAGTTTTACCATCAGGTTAGTCTCA-GGGTTTCTGCAAATGGGAATTCATGAACTTCTGTATACTAAGAGGGAAAGTAGCAGAATATAGTAAAATCTGCCTGTCTTCAGGTAGCATGAGAATAATATCTTCCATTAACTGCACAAAATCCTGGGACAGCAACTTATCTGC---CTCATCCAATACTATCACCTGG---ACATGACTGACCTTTGCTACTCCTTTCTTAATAAGATTCAGGATTCTCCCAGGGGCAGCAATCACCATGTGCACTGTATCATCCAGCCTCAGTACATCATCTCCTGAATTGGTTCCTCCTGTGGTCGTCACCACTTTGACTCCTCCCATTTGTTTGCTGACCTGGATGCAAATTTGACTGACCTGTAGAGCAGGTCCTCCTGTGGGAACAATCACCATTGTTTGTATAGTGTCCTTCTTCAGGTCTAGCCTTTTAAGTAGGGGAATGTCATGGGCACTGCTCTTGCCTGTTCCA--TTTTTTGCTCTAGCTAAGATATCCCTACCAGATAAAGCAATGGGAATGTTCTCTTCTTGGAAAGGAGATGTCTTTTTCCATCCCATTTCAAAAATTCTCATCAGTAACTTCCGTTTCAAACAGTAATCTTCAAATTAATTTCCTCTTGTGGAGGTCACATCCACCATTTTGATTCTTAGATCCTTTGGAAGGAGTTTTAAAGTCTTTTTCCAGTTATCACCAGGCTTAATAGTGGTGGTCATACTCTGCGCTTGTGGTTGAGTGCTATT----ATTGTGTTGGTG--TTTTTCAGCTGGTTCATCTGTTGCTGTGTCTGTGTGGCCTCTCCCCTAGGGCCACCACTGGGTTTCATGGGACCCCTCAGCTGACCATTTTGACTGGA-CAGACCCATTA-TAACAGCGTTCTCTGTTCTGGTTGTGCTCATGCTGTGTTAATTGCAAAGGTGTCTTTCAAACTTCAAAACGTTTGAAAGTCAGTAGAGAAACTGTAATAATAGTTTATTAGGCTGTCCAAAGTGAAGAGATAAATATAGGTCTTGCTCAATAATTGAGTTCTTTTATTATAATGCAGGCAAGCACCCGTAAGTCTCTGAATGGTAAGCAGCAGTAACTTGATTTCTTGTACTGAATCAACTTTTAATTTTTAAAAGGCCCTCTTACCAGCTTCGATTATAGCTGAATTCACTTACTTCAATCACTGAGGCCACTCCTGTGCTGGACACTCTTGGTCCTTTATTGTTGACTGGAAACTCCCAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29830876 2051 + 172585720 CCTTTCCCCAGAAAACATTTTTTTAAAACCAGCAGTTAGTGCAACTAATGTTCAGTCAGCACACAGTGCAAACAGATGG---AACAACAACAAAAGAAT--ATTCCTTCTTTTCAGCTTTT-TTCTCTTCACCAGTTaaaaaaggaaaaaaaaaaaaaaCCCAAACTCTTTTAAGTCTTCATAGTTCTGAAATAAAAGATGAAAAACCCACAAAGAGAAGAGCACCCCTTCCTAAAAAGTGGTATGTCACAGATCCAAACAACGCTTCTGTAGTTTGTCAAAGAGTGCTTGCTAAGGCTTCTCATTTTCTACAGCTTTGCTGTGGAATTCTGCTGCCTACAGGCTTTTGTCAATATTGCTTGGAATAGGTTTAATTTCTGTTCCCAACTGCTCCTCAATACTTTTCAGGTTGAAGTGATCACCATATGTGATCAAGTTGATGGCTAAGCCAAGATGACCAAAGTGACCTGATCTTCCAGTATGATGGAGATAGGTCTCTTCCAGCTTTGAAAAGTCCATGTTTATTACCACATTCATGGCTTGTATACCAATACCTCAGGTAAACAGATCAGTGCAAACAAGA-------ATAAACCATTTC-AGAAATAATAAAATACACAGTTTTGATGTTCCTGCCTCATTTTAGCATGAATGTAGAAACAAAAATAAACCAGTTGAGAAATTTTGGCTTGCCATTCAACTCGCTGAGAGCAGTTAAAGAAAATGATCGACTGGTTTAGCTGAAGCCTGGAGAAAAGTGTGTTGAGGCTGTGTGCTTTTCGGTGTTCAGTTACATATGTGTAATACTGGGTTATGTCCTTCAGAGTTAGTTTTTCCATCAGGTTAGTCTCA-GGATTTCTGAAAATGGGAATTCACAAACTTCTGTATACTAGGGGGGAAAGTAGCAGAATATAGTAAAATCTGCCTGTCTTCAGGCAGCACGAGAATAATATCTTCCATTATCTGCACAAAATCCTATGACAGGAACTTATCTGC---CTCATCCAATAGTATCACCTGG---ACATGATTGACCTTTGCTACTACTTTCTTGATAAGATTCAGGATTCTCCCAGGGGCAGCAATTACCACGTGCACTGTATCATGAATCCTCATTACATCAT---CTAAATTGGTTCCTCCTGTGGTTGTCATCACTTTGGCTCCTCCCATGTGTTTGCTGACCTGGATGCAAATTTGACTGACCTGTAGAGCAGGTTCTCCAGTGGGAAAAATCACCACTGTTTGTATAGTGTCCTTCTTCAGGTGTAGCCTTTCAAGTAAGGGAATGTCATAGGCACTGCTCTTGCCTGTTCCA-TTTTTTTGCTCTAGCTAAGATATCCCTACAAGATAAAGCAATGGGAATGCTCTCTTCTTGAAAAGGAGATGGCTTTTTCCATCTGATTTCAAAAATTCTCATCAGTAACTCCCGTTTCAAACAGTAATCTTCAAACTCATTTCCTCTTGTGGAGGTCACATCTAATGTTTTGGTTCTTAGATCCTTTGGAAGGAGTTTTAAAGTCTTTTTCCAGTTATCACCAGGCTTAACTGTGGTGGTCATACTCTGTGCTTGCTGCTGAGTGCTATT----ATCGGGTTGGT---TTTTTCAGCTGGTTCATCTGTTGCTGTGTCTGTGTGGCCTCTCCTCTAGGGCCACCACTGGGTTTCACAGGACCCCTCAGCTGACCATTTTGACTGGA-CAGACCCATTA-TAACAGCCTTCTCTGTTCTGGTTGTGCTCATGCTGTGTTAATTGCAAAGGGGTCCTTCAAACTTCAAAACGTTTGAAAGTCAGTAGAGAAACTATAATAATAGTTTATTAGGCTGTCCAAAGTGAAGAGGTAAATATAGGTCTTGTTTAATAATTGAGTTCTTTTATTATAATGCAGGTAAGCACCCATAAGTCTCTGAATGGTTAGTAGCAGTAACTTGCTTTCTTGTACTGAATCAAC-TTTAATTTTTAAAAGGCCCTCTTACCAGCTTCAAGTATAGCTGAATTCACTCATTTCAATCACTGAGGCCACTCCTGTGCTGGGCACTCTTGGTCCTTTATTGTTGACTGGAAGCTCCCCAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29493200 2051 - 170955103 CCTTTCCCCAGAAAACATTTTTTTAAAACCAGCAGTTAGTGCAACTAATGTTCAGTCAGCACACAGTGCAAACAGATGGAACAACAACAACAAAAGAAT--ATTCCTTCTTTTCAGCTTTT-TTCTCTTCACCAGTTAAAAAAGG---AAAAAAAAAAATCCAAACTCTTTTAAGTCTTCATAGTTCTGAAATAAAAGATGAAAAACCCACAAAGAGAAGAGCACCCCTTCCTAAAAAGTGGTATGTCACAGATCCAAACAACGCTTCTGTAGTTTGTCAAAGAGTGCTTGCTAAGGCTTCTCATTTTCTACAGCTTTGCTGTGGAATTCTGCTGCCTACAGGCTTTTGTCAATATTGCTTGGAATAGGTTTAATTTCTGTTCCCAACTGCTCCTCAATACTTTTCAGGTTGAAGTGATCACCATATGTGATCAAGTTGATGGCTAAGCCAAGATGACCAAAGTGACCTGATCTTCCAGTATGATGGAGATAGGTCTCTTCCAGCTTTGAAAAGTCAATGTTTATTACCACATTCATGGCTTGTATACCAATACCTCAGGTAAACAGATCAGTGCAAACAAGA-------ATAAACCATTTC-AGAAATAATAAAATACACAGTTTTGATGTTCCTGCCTCATTTTAGCATGAATGTAGAAACAAAAATAAACCAGTTGAGAAATTTTGGCTTGCCATTCAACTCGCTGAGAGCAGTTAAAGAAAATGATCGACTGGTTTAGCTGAAGCCTGGAGAAAAGTGTGTTGAGGCTGTGTGCTTTTCAGTGTTCAGTTACATATGTGTAATACTGGGTTATGTCCTTCAGAGTTAGTTTTTCCATCAGGTTAGTCTCA-GGATTTCTGAAAATGGGAATTCACAAACTTCTGTATACTAGGGGGGAAAGTAGCAGAATATAGTAAAATCTGCCTGTCTTCAGGCAGCACGAGAATAATATCTTCCATTATCTGCACAAAATCCTATGACAGGAACTTATCTGC---CTCATCCAATAGTATCACCTGG---ACATGATTGACCTTTGCTACTACTTTCTTGAAAAGATTCAGGATTCTCCCAGGGGCAGCAATTACCACGTGCACTGTATCATGAATCCTCATTACATCAT---CTAAATTGGTTCCTCCTGTGGTTGTCATCACTTTGGCTCCTCCCATGTGTTTGCTGACCTGGATGCAAATTTGACTGACCTGTAGAGCAGGTTCTCCAGTGGGAAAAATCACCACTGTTTGTATAGTGTCCTTCTTCAGGTGTAGCCTTTCAAGTAAGGGAATGTCATAGGCACTGCTCTTGCCTGTTCCA-TTTTTTTGCTCTAGCTAAGATATCCCTACAAGATAAAGCAATGGGAATGCTCTCTTCTTGAAAAGGAGATGGCTTTTTCCATCTGATTTCAAAAATTCTCATCAGTAACTCCCGTTTCAAACAGTAATCTTCAAACTCATTTCCTCTTGTGGAGGTCACATCTAATGTTTTGGTTCTTAGATCCTTTGGAAGGAGTTTTAAAGTCTTTTTCCAGTTATCACCAGGCTTAACTGTGGTGGTCATACTCTGTGCTTGCTGCTGAGTGCTATT----ATCGGGTTGGT---TTTTTCAGCTGGTTCATCTGTTGCTGTGTCTGTGTGGCCTCTCCTCTAGGGCCACCACTGGGTTTCACAGGACCCCTCAGCTGACCATTTTGACTGGA-CAGACCCATTA-TAACAGCCTTCTCTGTTCTGGTTGTGCTCATGCTGTGTTAATTGCAAAGGGGTCCTTCAAACTTCAAAACGTTTGAAAGTCAGTAGAGAAACTATAATAATAGTTTATTAGGCTGTCCAAAGTGAAGAGGTAAATATAGGTCTTGTTTAATAATTGAGTTCTTTTATTATAATGCAGGTAAGCACCCATAAGTCTCTGAATGGTTAGTAGCAGTAACTTGCTTTCTTGTACTGAATCAAC-TTTAATTTTTAAAAGGCCCTCTTACCAGCTTCAAGTATAGCTGAATTCACTCATTTCAATCACTGAGGCCACTCCTGTGCTGGGCACTCTTGGTCCTTTATTGTTGACTGGAAGCTCCCCAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2480883 2049 -   2996164 CCTTTCCCCAGAAAACATTTTTTTAAAACCAGCAGTTAGTGCAACTAATGTTCAGTCAGCACACAGTGCAAACAGATGG---AACAACAACAAAAGAAT--ATTCCTTCTTTTCAGCTTTT-TTCTCTTCACCAGTTAAAAAAGG---AAAAAAAAAAATCCAAACTCTTTTAAGTCTTCATAGTTCTGAAATAAAAGATGAAAAACCCACAAAGAGAAGAGCACCCCTTCCTAAAAAGTGGTATGTCACAGATCCAAACAACGCTTCTGTAGTTTGTCAAAGAGTGCTTGCTAAGGCTTCTCATTTTCTACAGCTTTGCTGTGGAATTCTGCTGCCTACAGGATTTTGTCAATATTGCTTGGAATAGGTTTAATTTCTGTTCCCAACTGCTCCTCAATACTTTTTAGGTTGAAGTGATCACCATATGTGATCAAGTTGATGGCTAAGCCAAGATGACCAAAGTGACCTGATCTTCCAGTATGATGGAGATAGGTCTCTTCCAGCTTTGAAAAGTCAATGTTTATTACCACATTCATGGCTTGTATATCAATACCTCAGGTAAACAGATCAGTGCAAACAAGA-------ATAAACCATTTC-AGAAATAATAAAATACACAGTTTTGATGTTCCTGCCTCATTTTAGCATGAATGTAGAAACAAAAATAAACCAGTTGAGAAATTTTGGCTTGCCATTCAACTCACTGAGCGCAGTTAAAGAAAATGATCGACTGGTTTAGCTGAAGCCTGGAGAAAAGTGTGTTGAGGCTGTGTGCTTTTTGGTGTTCAGTTACATATGTGTAATACTGGGTTATGTCCTTCAGAGTTAGTTTTTCCATCAGGTTAGTCTCA-GGATTTCTGAAAATGGGAATTCACAAACTTCTGTATACTAGGGGGGAAAGTAGCAGAATATAGTAAAATCTGCCTGTCTTCAGGCAGCACGAGAATAATATCTTCCATTATCTGCACAAAATCCTATGACAGGAACTTATCTGC---CTCATCCAATAGTATCACCTGG---ACATGATTGACCTTTGCTACTACTTTCTTGATAAGATTCAGGATTCTCCCAGGGGCAGCAATTACCACGTGCACTGTATCATGAATCCTCATTACATCAT---CTAAATTGGTTCCTCCTGTGGTTGTCATCACTTTGGCTCCTCCCATGTGTTTGCTGACCTGGATGCAAATTTGACTGACCTGTAGAGCAGGTTCTCCAGTGGGAAAAATCACCACTGTTTGTATAGTGTCCTTCTTCAGGTGTAGCCTTTCAAGTAAGGGAATGTCATAGGCACTGCTCTTGCCTGTTCCATTTTTTTTGCTCTAGCTAAGATATCCCTACAAGATAAAGCAATGGGAATGCTCTCTTCTTGAAAAGGAGATGGCTTTTTCCATCTGATTTCAAAAATTCTCATCAGTAACTCCCGTTTCAAACAGTAATCTTCAAACTCATTTCCTCTTGTGGAGGTCACATCTAATGTTTTGGTTCTTAGATCCTTTGGAAGGAGTTTTAAAGTCTTTTTCCAGTTATCACCAGGCTTAACTGTGGTGGTCATACTCTGTGCTTGCTGCTGAGTGCTATT----ATCGGGTTGGT---TTTTTCAGCTGGTTCATCTGTTGCTGTGTCTGTGTGGCCTCTCCTCTAGGGCCACCACTGGGTTTCACAGGACCCCTCAGCTGACCATTTTGACTGGA-CAGACCCATTA-TAACAGCCTTCTCTGTTCTGGTTGTGCTCATGCTGTGTTAATTGCAAAGGGGTCCTTCAAACTTCAAAACGTTTGAAAGTCAGTAGAGAAACTATAATAATAGTTTATTAGGCTGTCCAAAGTGAAGAGGTAAATATAGGTCTTGTTTAATAATTGAGTTCTTTTATTATAATGCAGGTAAGCACCCATAAGTCTCTGAATGGTTAGTAGCAGTAACTTGCTTTCTTGTACTGAATCTAC-TTTAATTTTTAAAAGGCCCTCTTACCAGCTTCAAGTATAGCTGAATTCACTCATTTCAATCACTGAGGCCACTCCTGTGCTGGGCACTCTTGGTCCTTTATTGTTGACTGGAAGCTCCCCAAAT
i macNem1.NW_012011356v1   C 0 C 0
s colAng1.NW_012115566v1    2386769 2049 -   3067355 CCTTTCTCCAGAAAACATTTTTTTAAAACCAGCAGTTAGTGCAACTAATGTTCAGTCAGCACACAGTGCAAACAGATGGAACAACAACAAAAAAAGAAT--ATTCCTTCTTTTCAGCCTTT-TTCTCTTCACCAGTTAAAAAAGG----AAAAAAAAAATCCAAACTCTTTTAAGTCTTCATAGTTCTGAAATAAAAGATGAAAAACCCACAAAGAGAAGAGCACCCCTTTCTAAAAAGTGGTATGTCACAGATCCAAACAAGGCTTCTGTAATTTGTC--AGAGTGCTTGCTAAGGCTTCTCATTTTCTACACCTTTGCTGTGGAATTCTGCTGCCTACAGGCTTTTGTCAATATTGCCTGGAATAGGTTTAATTTCTGTTCCCAACTGCTCCTCAATACTTTTCAGGTTGAAGTGATCACCATATGTGATCAAGTTGATGGCTAAGCCAAGATGACCAAAGTGACCTGATCTTCCAGTATGATGGAGATAGGTCTCTTCCAGCTTTGAAAAGTCAATGTTTATTACCACATTCATGGCTTGTATATCAATACCTCAGGTAAACAGATCAGTGCAAACAAAA-------ATAAACCATTTC-AGAAATAATAAAATGCACAGTTTTGATGTTCCTGCCTCATTTTAGTATGAATGTAGAAACAAAAATAAACCAGTTGAGAAATTTTGGCTGGCCATTCAACTCGCTGAGAGCAGTTAAAGAAAATGATCAACTGGTTTAGCTGAAGCCTGGAGAAAAGTGTGTTGAGGCCGTGTGCTTTTTGGTGTTCAGTTACACATGTGTAGTACTGGGTTATGTCCTTCAGAGTTATTTTTTCCATCAGGTTAGTCTCA-GGATTTCTGCAAATGGGAATTCACGAACTTCTGTGTACTAAGGGGGAAAGTAGCAGAATATAGTAAAATCTGCCTGTCTTCAGGCAGCATGAGAATAATATCTTCCATTATCTGCACAAAATCCTGTGACAGAAACTTACCTGC---CTCATCCAATAGTATCATCTGG---ACATGATTGACCTTTGCTACTACTTTCTTAATAAGATTCAGGATTCTCCCAGGGGCAGCAATTACCACGTGCACTGTATCATGAAGCTTCATTACATCAT---CTAAATTGGTTCCGCCTGTGGTTGTCATCACTTTGGCTCCTCCCATGTGTTTGCTGACCTGGATGCAAATTTGACTGACCTGTAGAGCAGGTTCTCCAGTGGGAACAATCACCACTGTTTGTATAGTGTCCTTCTTCAGGTCTAGCTTTTTAAGTAAGGGAATGTCATAGGCACTGCTCTTGCCTGTTCCATTTTTTTTGCTCTAGCTAAGATATCCCTACAAGATAAAGCAATGGGAATGCTCTCTTCTTGAAAAGGAGATGGCTTTTTCCATCTGATTTCAAAAATTCTCATCAGTGACTCCCATTTCAAACAGTAATCTTCAAACTCATTTCCTCTTGTGGAGGTTACATCTAATGTTTTGATTCTTAGATCCTTTGGAAGGAGTTTTAAAGTCTTTTTCCAGTTATCATCAGGCTTAATGGTGGTGGTCATACTCTATGCTTGCTGCTGAGTGCTATT----ACTGGGTTGGT---TTTTTCAGCTGGTTCATCTGTTGCTGTGTCTGTGTGGCCTCTCCTCTAGGGCCACCACTGGGTTTCACGGGACCCCTCAGCTGACCGTTTTGACTGGA-CAGGCCCATTA-TAACAGCCTTCTCTGTTCTGGTTGTGCTCATGTTGTGTTAATTGCAAAGGGGTCCTTCAAACTTCAAAACGTTTGAAAGTCAGTAGAGAAACTGTAATAATAGTTTATTAGGCTGTCCAAAGTGAAGAGATAAATTTAGGTCTTATTTAATAATTGAGTTCTTTTATTATAATGCAGGTAAGCACCCATAAGTCTCTGAATGGTAAGCAGCAGTAACCTCCTTTCTTGTACTGAATCAAC-TTTCATTTTTAAAAGGCCCTCTTACCAGCTTCAAGTATAGCTGAATTCACTCATTTCAATCACTGAGGCCACTCCCATGCCGGACACTCTTGGTCCTTTACTGTTGACTGGAAGCTCCCAAAAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378147          3394095 2066 +  17632151 CCTTTCCCCAGAAGACATTTTTTAAAAACCAGCAGTTAGTGCAACTAATCTTCACCCAGCACACAGTGCAAACAAGTGG---AACAAAAAAAGGTTTATTCATTCCTTCTTTTCAGCCTTTATTCTCATCACCGGTTTTAAAA------AAAAAAAAAATCTGAGCTATTTTAAGTCTTCATAGTTCCAAAATAAAAGATGAAAAGCCCATAAAGAGAAGAACATTCCCCCC---AAAACGATGCGTCACAGATCCAAACGAGCCTTCTGCAGTTTGTCAAAGCACGCTTGCTAAGGTTTCTCATCTTCTACAGGCTCGCTCTGGTATTCTGCCACATACAGGCTCTTGTCAATGTTGCTTGGAATAAGTTTAATTTCTGTTCCCATCTACTCCTCAGTATTTTTCAGGTTGAAGTGATCATCGTATGTCATCAGGTTGTTGGCTAAGTCAACATGACCAAAGCAACTTGATCTTCCAATACAATGGAGACAGGTCTTCGCCAGCTTTGGGAAATCAAAGTTTATTACCACATTCACAGCTTGTATAGCAATACCTCCGGTAAACAGATCAGTGCAAACAAGATCGTGGGATAAGCCATTTCTGGAAATCATGAAACACATGCTTTTGATGTACCTGCCTCATTTTAGCATGGATATAGAAGCAAGAATAACTCAGTTGGGAAATCTTGGCTAGGAATTCAACTCACTGAGAGGTGTTACAGAAAATGATCGACTGGTTTACCTGAAGCCTGAAGAAACGGGTGTTGAGGCAGTGCACTTTTCGGTGCTCAGTTACATATGCATAGTACTGGGTTACTCCCTTCACAGTTAATTCCTCCATTAGATTAATCTCGCAGGGTTCTGCAATTGAGAATTCATGAACTTCTGTACACTGAGAAGGAAAGTAGCGAAATATAGTAAAATCTGCCTGTTTCTAGGTACTGTGAGAATTATACATTCCATTATCTGCACAAAATCCTGTGACAGCAACTTAACTGCCTGCTCATCCAATGCTATCATCCCGACAACATCATCAATCTTTGCTACTCCTTTCTTAATAAAATCCAGGATTCT-CCAGGGGCAGCAATCACCACGTGCACTGTATCATCAAGCCTCATTGTGTCATCTCGTAAATTGGTTGCTCCTGTGATTACAATCACTTTGGCCCATCTCACGTGTTTGCTGTCGTGGATGCAAATTTGACTGACCCGTGCAGCAAGGTCTCCAGTGCGAACAATCGCCATCGCTTGTATATTGTATTTCTTCAGGTCT-GCCATTCAAGTAAGGGAATGAGGTAAGCACGGCTCTTGCCTGTTCCA-TTTTTTTGCTCTAGCTAAGATATCCCTACCAGATAAAGCAATGTGAATGCTCTCCTCCTGAATAGGGGACGGCTTTTCCAAGCCCACTTAAAAAATTCCCATTAGTAACTCCCATTTCAAACAGTAACCTTCAAGGTTGTTTCCTTTTGTGGAAGTCACATCTGAAGTTTCGATTCTTAGATCCTTTGGAGGGAGTTTTAAAGTCT--TTCCAGTCATTGACAGGTTAAATAGTGGTGGTCATACTCTGTGCTTGCTGCTGAGTGCCATTACTGACTGTGTTGGTGTTCTTCTCAGCTGGTTCGTCTGTTGCTGTGTCTGTGTGCCCCCTTCTCCAGGGCCCACATTGCGTTTCACAGAGCCTCTCAGCTGACCATTTTGACTGGACCCGACTCATTGTTAACAGGGTTCTCTGCTCTGGTCCTGCTCATGCTGTTTGAGTTGCAAAAGTGTCTTTCAAATTTCAAAACTTTTGAACGTCAGTAGAGAAACTGTAATAACAGCTTATTAGGCTCTCCAAAATGAAGAGATAAATATAAGTCTTGCTCAATAAATGAGCTC-TTTATGGCAATGCAGGCCAGCAACTGTAAGTCTCTGAACGGTAAACAGCGGTAACTTGCCCGCTTGCGTGGAATCAACTTTTTATTTTTAACAAGCCCTTTAATTAGCTTGAGTTATATCTGAATTCACTCATGTCAATCAATGAGGCCACTCCC--GCTCGGCACCCTTGGTCCTTTATTGTTGATTCGAAGGTCTCAAAAT
i saiBol1.JH378147         C 0 N 0
e canFam3.chr35            26144709 15139 +  26524999 I
e otoGar3.GL873742          1984945 3707 -   2232465 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e chlSab2.chr17            28747677  870 -  71996105 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=7917623.000000
s hg38.chr6_GL000254v2_alt   597219 3341 +   4827813 ATTGCCACTCTTTCCTCTTTGGATACCTCAACCTGCACCTCCAGATATAATTTCTAAGATCAATTACTGAGACACACAAAGAAATCTGGTGAGATTTTACGTGGTTTAGAATAAAGTCCAAAGAGGCTGTTTGATATAGTGGTTTTTCCTACTTCTTTCTAGAACTCACAGATGAAAAAGAAAAATGCAGAAATATGAGACTCATTACCAAGTGACTCGTCAACACTCATATACTGATGTGTAttttgttttgtttgttt------aaagacagtcttgctatgttgcccaggctggagtgccgtggtgattcacaggtgtgatcatggttcactacagcctcaggctcctgggctcatcctcccacctcagcatactgaggagctaggactgctggcatgtgccatcatacccagttaaattatatgtattttAATTAGGGTAGAACCCTTAGTTATTTCCAAAGCTATTTCTTATACTGTATTTAAAACTTAAACTTAATTCTAAAGAAAAGATAATGAATAAATGAATCCCtt-ttttttgttgagatggagtctcactctgtcaccagcctagagtgcagtggtgcaatctcagctcactgcagcctctgcctcccgggttcaagtgattctcctgcc-tcagcctcctgagtagctgggactacaggaccgcgcaccaccacacccagctaatttttgaatttttagtagagat-gtgtttcaccatgttggccaggatggtctctatctcctgaccttgtgatctgtctgcctcagcctcccaacatgctgggattacaggcgtgagccaccgcacccggccATAACTTATTTTTAATATCTCTTGACTGCAGCTGCT-ACCACAATTTGCATCTTCAAAATGGTTATGGAggttcaagatggctgactggaagcagctagagtatgctactctcaaagagaggaaagaaagtggcaagtaaatagtagctcttcaggtgaattctctaagagagcatgtcaagattcaccaaggaagtgagggggctcacgaagacctcagcacattttatcaggagcttctcctagccacacccatcagggctggtgcctgcacctgtcattgagatattcgtgggaaagccacgtttccagctctgcccaggtatatcccaccaccctcacaaattaggaagctcagaacactggacacccaccccactgtccagtccttcacctgaaacaacagagagcacctcacagtaaataaaggtcagctcccctcccacctacttgtgtggcagctgactcttacctgcaaatgccatatcctgagtcataggtcaaaccacacagcccaacacaaaacctgctgacagaagtgcataggactatagaaacaaccccaaagaccctacctagtacaacactctccagatgagaaggaaccagcacaagaattctgccaccattaaaaatctgaatggaatgacatcatcaaaggctgactctaggtttccagcaatggttcttaaccaaaatggaggcaggaggatgacagaggaggaattcaaagtatggattacagggaaactcaatgagatccaaaataaggttaaaaatcagtacaaagaaacctgtaaagcaatccaggaaataaaagaagatgcaaacatcttaaaaagaaatcattcagagcaatgaaaactataaaactcacttaaggaatttcaaaatacaattgaatgctttcccaatagactagaccaaacagaagaaagaatttcagagtttgaagattggtctttcaaacttacccagtcagacaaaaacaa----agaaaaaagaaatttaaaaattcttaaaattcttggcacaaagtctccaag-acacatggg-ttgtgtaaaatggcaaaacctgtgaatgactggcattaatgagagagaaaaagaaaaagtaaaaaacatggaaaacatatttgagggaataatttgagaaattttcctttatcttgctagggaagtagacatacagatataataaatccagagaagacctgccagatcctatataaaatgaacatcaccaaggtatatagtgaccagaatgcccaaggtcaatgctaaagaaaaaacttt--aaaggcagctagaaaaaaaggttagatcccatacaaagggaatcccatcaggctaacagcaaa-----cagaggaaacattataaacttattgggggccttctcagcagaaatcttatgggggacttacattcagcattttttaag-gaagagactccaaccaagaatttcatacaacaccaaaccaagcttcataagttaacaagaactaa-aatatttttcagataagcaatagctaagggaagtcattaccactaaaccagccttacaagagatccataatggatttctaaacatggaaagaataataactgctactacaaaaacacacttaactacatagtccacagaccctatatggcaaccacacaatagaaactacaaagcaaccagctaacaactttacgatatgatcaaaatctcacatattaatattaaccttgaatgtgaatggtcttaacaccctacttcaaaggcacagagtggcaagttggataaaaaacaagactcacccatctgctgtcttcaagagacccatcttacacgtgatgacactgatagactcaaggtaaagggtaggagaaagatctatcacccaaacagaagacaaaaaagagcaggggttacaattattatttcagataaaatagactttaaaacaacagtagtcaaaaaaggataaagaagggctctatgcaatgataaagggtttgatccaaccacatggcttaactatcctgaatatatatgcaactaaaattggagcacctagattcataaaacaagtactgctagacctacaaaaa----tacttagccacaccatgggagtgggtgacttcaacatcccattgacagagttagatcatcaaggcagaaaactaacaaagaaatcctggagttaaattcgacatttgaccaattggacataatagacatctacagaacactccacccagcaaccataggatatacattcttctcatttgcatatggaacatatgctaagattgaccacatgcttggacatcaggcaagtctcaataaagttaaaaaattcaaaatcatacaaactatac-tttgggccatggtggaataaaaatacaaatcaataccggtaagttctctcaaaaccacaaaattacatggaaattaaataactttattctgagtaa--------cttttgggtaaacaataaaattaaggcaaaaatttagaaaattatttaaaataaataaaaacagag
s panTro5.chr6             29569576 3336 + 175400573 ATTGCCACTCCTTCCTCTTTGGATACCTCAACCTGCACCTCCAGATATAATTTCTAAGATCAATTACTGAGACACACAAAGAAATGTGGTGAGATTTTACGTGGTTTAGAATAAAGTCCAAAGAGGCTGTTTGATATAGTGGTTTTTCCTACTTCTTTCTAGAACTCACAGATGAAAAAGAAAAATGCAGAAATATGAGACTCATTACCAAGTGACTCATCAACACTCATATACTGATGTGTAttttgttttgtttgttt------aaagacagtcttgctatgttgcccaggctggagtgccatggtgattcacaggtgtgatcatggttcactatagcctcaagctcctgggctcatcctcccacctcagcatactgaggagctaggactgctggcatgtgccatcatacccagttaaattatatgtattttAATTAGGGTAGAACCCTTAGTTATTTCCAAAGCTATTTCTTATACTGTATTTAAAACTTAAACTTAATTCTAAAGAAAAGATAATGAATAAATGAATCCCCt-ttttttgttgagatggagtctcactctgtcaccagcctagagtgcagtggtgcaatctcagctcactgcaacctctgcctcccgggttcaagtgattctcctgcc-tcagcctcccgagtagctgggactacaggaccacgcaccaccacgcccagctaatttttgaatttttagtagagat-atatttcaccatgttggccaggatggtctctatctcctgaccttgtgatctgtctgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgcacccagccATAACTTATTTTTAATATCTCTTGACTGCAGCTGCT-ACCACAATTTGCATCTTCAAAATGGTTATGGAggttcaagatggctgactggaagcagctagagtatgctactctcaaagagaggaaagaaagtggcaagtaaatagtagctcttcaggtgaattctctaagagagcatgtcaagattcaccaaggaagtgagggggctcacgaagacctcagcacattttatcaggagcttctcctagccacacccatcagggctggtgcctgcacctgtcattgagatattcgtgggaaagccatgtttccagctctgcccaggtatatcccaccaccctcacaaattaggaagctcagaacactggacacccaccccactgtccagtccttcacctgaaacaacagagagcacctcacagtaaataaaggtcagctcccctcccacctacttgtgtggcagctgactcttacctgcaaatgccatatcctgagtcataggtcaaaccacacagcccaacacaaaacctgctgacagaagtgcataggactatagaaacaaccccaaagaccctacctagtacaacactctccagatgagaaggaaccagcacaagaattctgccaccattaaaaatctgaatggattgacatcatcaaaggctgactctaggtttccagcaatggttcttaaccaaaatggaggcaggaggatgacagaggaggaattcaaagtatggattacagggaaactcaatgagatccaaaataaggttaaaaatcagtacaaagaaacctgtaaagcaatccaggaaataaaagaagatgcaaacatcttaaaaagaaatcattcagagcaatgaaaactataaaactcacttagggaatttcaaaatacaattgaatgctttcccaatagactagaccaaacagaagaaagaatttcagagtttgaagtctggtctttcaaacttacccagtcagacaaaaacaa----agaaaaaagaaatttaaaaattcttaaaattcttggcacaaagtctccaag-acacatggg-ttgtgtaaaatggcaaaacctatgaatgactggcattaatgagagagaaaaagaaaaagtaaaaaacatggaaaacatatttgagggaataatttgagaaattttcctttatcttgctagggaagtagacatacagatataataaatccagagaagacctgccagatcctatataaaatgaacatcaccaaggtatatagtgaccagaatgcccaaggtcaatgctaaagaaaaaacttt--aaaggcagctagaaaaaaaggttagatcccatacgaagggaatcccatcaggctaacagcaaa-----cagaggaaacattataaacttattggggaccttctcagcagaaatcttatgggggacttacattcagcattttttaag-gaagagactccagccaagaatttcatacaccaccaaaccaagcttcataagttaacaagaactaa-aatatttttcagataagcaatagctaagggaagtcattaccactaaaccagccttacaagagatccataatggatttctaaacatggaaagaataataactgctactacaaaaacacacttaactacatagtccacagaccctatatggcaaccacacagtagaaactacaaagcaaccagctaacaactttatgatatgatcaaaatctcacatattaatattaaccttgaatgtgaatggtcttaacacactacttcaaaggcacagagtggcaagttggataaaaaacaagactcacccatctgctgtcttcaagagacccatcttacacgtgatgacactgatagactcaaggtaaagggtaggagaaagatctatcacccaaacagaagacaaaaaagagcaggggttacaattattatttcagataaaatagactttaaaacaacagcagtcaaaaaaggataaagaagggctctatgcaatgataaagggtttgatccaaccacatggcttaactatcctgaatatatatgcaactaaaattggagcacctagattcataaaacaagtactgctagacctacaaaaa----tacttagccacaccatgagagtgggtgacttcaacatcccactgacagagttagatcatcgaggcagaaaactaacaaagaaatcctggagttaaattcgacacttgaccaatcagacataatagacatctacagaacactccacccagcaaccacaggatatacattcttctcatttgcatatggaacatatgctaagattgaccacatgcttggacatcaggcaagtctcaataaagttaaaaaattcaaaatcatacaaactatacatttgggccatggtggaataaaaatacaaatcaataccggtaagttctctcaaaaccacaaaattacatggaaattaaataactttattctgagtaa--------cttttgggtaaacaataaaattaaggcaaaaatttagaaaattattta----aaataaaaac--ag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29807815 3336 + 173848474 ATTGCCACTCCTTCCTCTTTGGATACCTCAACCTGCACCTCCAGATATAATTTCTAAGATCAATTACTGAGACACACAAAGAAATGTGGTGAGATTTTACGTGGTTTAGAATAAAGTCCAAAGAGGCTGTTTGATATAGTGGTTTTTCCTACTTCTTTCTAGAACTCACAGATGAAAAAGAAAAATGCAGAAATATGAGACTCATTACCAAGTGACTCATCAACACTCATATACTGATGTGTAttttgttttgtttgttt------aaagacagtcttgctatgttgcccaggctggagtgccatggtgattcacaggtgtgatcatggttcactatagcctcaagctcctgggcttatcctcccacctcagcatactgaggagctaggactgctggcatgtgccatcatacccagttaaattatatgtattttAATTAGGGTAGAACCCTTAGTTATTTCCAAAGCTATTTCTTATACTGTATTTAAAACTTAAACTTAATTCTAAAGAAAAGATGATGAATAAATGAATCCCCt-ttttttgttgagatggagtctcactctgtcaccagcctagagtgcagtggtgcaatctcagctcactgcaacctctgcctcctgggttcaagtgattctcctgcc-tcagcctcccgagtagctgggactacaggaccacgcaccaccacgcccagctaatttttgaatttttagtagagat-atgtttcaccatgttggccaggatggtctctatctcctgaccttgtgatctgtctgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgcacccggccATAACTTATTTTTAATATCTCTTGACTGCAGCTGCT-ACCACAATTTGCATCTTCAAAATGGTTATGGAggttcaagatggctgactggaagcagctagagtatgctactctcaaagagaggaaagaaagtggcaagtaaatagtaggtcttcaggtgaattctctaagagagcatgtcaagattcaccaaggaagtgagggggctcacgaagacctcagcacattttatcaggagcttctcctagccacacccatcagggctggtgcctgcacctgtcattgagatattcgtgggaaagccatgtttccagctctgcccaggtatatcccaccaccctcacaaattaggaagctcagaacactggacacccaccccactgtccagtccttcacctgaaacaacagagagcacctcacagtaaataaaggtcagctcccctcccacctacttgtgtggcagctgactcttacctgcaaatgccatatcctgagtcataggtcaaaccacacagcccaacacaaaacctgctgacagaagtgcataggactatagaaacaaccccaaagaccctacctagtacaacactctccagatgagaaggaaccagcacaagaattctgccaccattaaaaatctgaatggattgacatcatcaaaggctgactctaggtttccagcaatggttcttaaccaaaatggaggcaggaggatgacagaggaggaattcaaagtatggattacagggaaactcaatgagatccaaaataaggttaaaaatcagtacaaagaaacctgtaaagcaatccaggaaataaaagaagatgcaaacatcttaaaaagaaatcattcagagcaatgaaaactataaaactcacttagggaatttcaaaatacaattgaatgctttcccaatagactagaccaaacagaagaaagaatttcagagtttgaagtctggtctttcaaacttacccagtcagacaaaaacaa----agaaaaaagaaatttaaaaattcttaaaattcttggcacaaagtctccaag-acacatggg-ttgtgtaaaatggcaaaacctatgaatgactggcattaatgagagagaaaaagaaaaagtaaaaaacatggaaaacatatttgagggaataatttgagaaattttcctttatcttgctagggaagtagacatacagatataataaatccagagaagacctgccagatcctatataaaatgaacatcaccaaggtatatagtgaccagaatgcccaaggtcaatgctaaagaaaaaacttt--aaaggcagctagaaaaaaaggttagatcccatacgaagggaatcccatcaggctaacagcaaa-----cagaggaaacattataaacttattggggaccttctcagcagaaatcttatgggggacttacattcagcattttttaag-gaagagactccaaccaagaatttcatacaccaccaaaccaagcttcataagttaacaagaactaa-aatatttttcagataagcaatagctaagggaagtcattaccactaaaccagccttacaagagatccataatggatttctaaacatggaaagaataataactgctactacaaaaacacacttaactacatagtccacagaccctatatggcaaccacacagtagaaactacaaagcaaccagctaacaactttatgatatgatcaaaatctcacatattaatattaaccttgaatgtgaatggtcttaacacactacttcaaaggcacagagtggcaagttggataaaaaacaagactcacccatctgctgtcttcaagagacccatcttacacgtgatgacactgatagactcaaggtaaagggtaggagaaagatctatcacccaaacagaagacaaaaaagagcaggggttacaattattatttcagataaaatagactttaaaacaacagcagtcaaaaaaggataaagaagggctctatgcaatgataaagggtttgatccaaccacatggcttaactatcctgaatatatatgcaactaaaattggagcacctagattcataaaacaagtactgctagacctacaaaaa----tacttagccacaccatgagagtgggtgacttcaacatcccactgacagagttagatcatcgaggcagaaaactaacaaagaaatcctggagttaaattcgacacttgaccaatcagacataatagacatctacagaacactccacccagcaaccacaggatatacattcttctcatttgcatatggaacatatgctaagattgaccacatgcttggacatcaggcaagtctcaataaagttaaaaaattcaaaatcatacaaactatacttttgggccatggtggaataaaaatacaaatcaataccggtaagttctctcaaaaccacaaaattacatggaaattaaataactttattctgagtaa--------cttttgggtaaacaataaaattaaggcaaaaatttagaaaattattta----aaataaaaac--ag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5610640 3342 +   6154872 AGTGCCACTCCTTCCTCTTTGGATACCTCAACCTGCACCTCCAGATATAATTTCTAAGATCAATTACTGAGACACACAAAGAAATCTGGTGAGATTTTACGTGGTTTAGTATAAAGTCCAAAGAGGCTGTTTGATATAGTGGTTTTTCCTACTTCTTTCTAGAACTCACAGATGAAAAAGAAAAATGCAGAAATATGAGACTCATTACCAAGTGACTCGTCAACACTCATATACTGATGTGTAttttgttttgtttgttt------aaagacagtcttgctacgttgcccagcctggagtgccgtggtgattcacaggtgtgatcatggttcactacagcctcaagctcctgggctcatcctcccacctcagcatactgaggagctaggactgctggcatgtgccatcatacccagttaaattatatgtattttAATTAGGGTAGAACCCTTAGTTATTTCCAAAGCTATTTCTTATACTGTATTTAAAACTTAAACTTAATTCTAAAGAAAAGATAATGAATAAATGAATCCCTC-ttttttgttgagatggagtctcactctgtcaccagcctagactgcagtggtgcaatctcagctcactgcagcctctgcctcccgggttcaagtgattctcctgcc-ccagcctcccgagtagctgggactacaggaccacgcaccaccatgctcggctaatttttgaatttttagtagagat-gtatttcactatgttggccaggatggtctctatctcctgaccttgtgatctgtctgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgcacccggccATAACTTATTTTTAATATCTCTTGACTGCAGCTGCT-ACCACAATTTACATCTTCAAAATGGTTATGGAggttcaagatggctgactggaagcagctagagtatgctactctcaaagagaggaaagaaagtggcaagtaaatagtagctcttcaggtgaattctctaagagagcatgtcaagattcaccaaggaagtgagggggctcacgaagacctcagcacattttatcaggagcttctcctagccacacccatcagagctggtgcctgcacctgtcattgagatattcgtgggaaagccatgtttccagctctgcccaggtatatcccaccaccctcacaaattaggaatctcagaacactggacacccaccccactgtccagtccttcacctgaaacaacagagagcacctcacagtaaataaaggtcagctcccctcccacctacttgtgtggcagctgactcttacctgcaaatgccatatcctgagtcgtaggtcaaaccacacagcccaacacaaaacctgctgacagaagtgcataggactatagaaacaaccccaaagaccctacctagtacaacactctccagatgagaaggaaccagcacaagaattctgccaccattaaaaatctgaatggattgacatcatcaaaggctgactctaggtttccagcaatggttcttaaccaaaatggaggcagaaggatgacagaggaggaattcaaagtatggattacagggaaactcaatgagatccaaaataaggttaaaaatcagtacaaagaaacctgtaaagcaatccaggaaataaaagaagatgcaaacatcttaaaaagaaatcattcagagcaatgaaaactataaaactcacttagggaatttcaaaatacaattgaatgctttcccaatagactagaccaaacagaagaaagaatttcagagtttgaagattggtctttcaaactaacccagtcagacaaaaacaa----agaaaaaagaaatttaaaaattcttaaaattcttggcacaaagtctccaag-acacatgag-ttatgtaaaatggcaaaacctatgaatgactggcattaatgagagagaaaaagaaaaagtaaaaaacatggaaaacatctttgagggaataatttgagaaattttcctttatcttactagggaagtagacatacagatataataaatccagagaagacctgccagatcctatataaaatgaacatcaccaaggtatatagtgaccggaatgcccaaggtcaatgctaaaggaaaaacttt--aaaggcagctagaaaaaaaggttagattccatacaaagggaatcccatcgggctaacagcaaa-----cagaggaaacattataaacttattggggggcttctcagcagaaatcttatgggggacttacattcagcattttttaag-gaagagactccaaccaagaatttcatacaccaccaaaccaagcttcataagttaacaagaactaa-aatatttttcagataagcaatagctaagggaagtcattaccactaaaccagccttacaagagatccataatggatttctaaacatggaaagaataataactgctactacaaaaacacacttaactacatagtccacagaccctatatggcaaccacacaatagaaactacaaagcaaccagctaacaactttatgatatgatcaaaatctcacatattaatattaaccttgaatgtgaatggtcttaacaccctacttcaaaggcacagagtggcaagttggataaaaaacaagactcacccatctgctgtcttcaagagacccatcttacatgtaatgacactgatagactcaaggtaaagggtaggagaaagatctatcacccaaacagaagacaaaaaagagcaggggtaacaattattatttcagataaaatagactttaaaacaacagcagtcaaaaaaggataaagaagggctctatgcaatgataaagggtttgatccaaccacatggcttaactatcctgaatatatatgcaactaaaattggagcacctagattcataaaacaagtactgctagacctacaaaaa----tacttagccacaccatgagagtgggtgacttcaacatcccactgacagagttagatcatcgaggcagaaaactaacaaagaaatcctggagttaaattcgacacttgaccaattggacataatagacatctacagaacactccacccagcaaccacaggatatacattcttctcatttgcatatggaacatatgctaagattgaccacatgcttggacatcaggcaagtctcaataaagttaaaaaattcaaaatcatacaaactatacttttgggccatggtggaataaaaatacaaatcaataccggtaagttctctcaaaaccacaaaattacatggaaattaaataactttattctgagtaa--------cttttgggtaaacaataaaattaaggcaaaaatttagaaaattatttaaaataaataaaaacagag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29832927 3340 + 172585720 GGTGCCACTCCTTCCTCTTTGGACACCTCAACCTGCACCTCCGGATATAATTTCTAAGATTAATTACTGAGACACACAGATAAATCTGGTGAGATTTTACATGGTTTAGAATAAAGTCCAAAGAGGCTGTTGGATATAGTGG-TTTTCCCACTTCTTTCTAGAACTCACAGATTGAAAAGAAAAATGCAGAAATATGACACTCATTACCAAGTGACTCGTCAACACTCATATACTGATGTGTAttttgttttgtttgtttgtttagaaacagagtcttgctatgttgcccaggctggagtgcagtggtgattcacaggtgtgatcatggctcactatagcctcaaactcctgggctcatcctcccgcctcagcatactgaggagctaggactgctggcatgtgccatcataccctgttaaatgatatgtattttAATTAGGGTAGAACTCTCAGTTATTTCCAAAGCTATTTCTTATACTGTATTTAAATCTTAAACTTAATTCTGAAGAAGAAATAATGAATAAATGAATCACtt-tttt---ttgagactgtgtctcgctctgtcaccagcccagagtgcagtggccctttctcggctcactgcaatctccacctcccgggttcaaccgattatcctcttgtgagccttccgagtagctgggactacaggcccgtgcgccaccacacccagctaatttttgtatttctagtagagacggtgcttctccatgttggccaggatggtctc-----cctgacctcgtgatccgcccgcctaggcctctcaaaatgctgggattacaggcgtgagccaccgcgccaggccATAACTTATTTTTAATATCTCTTGACTGCAGCCGCTCACCACAATTTGCATTTTCCAAATGGTTATGGAggttcaagatggctgactggaagcagctagtgtgtgctgctctcacagagaggaaagacagtggtgagtaaatagtagttcttcaggtaaattctctaagacagcatgtcaagattcaccaaggaagtg-gggggCTCGcaaagacctcaccacattttaccaggagcttctcctagccacacccatcagggctggtgcctgtacttgtcattgagatattcatgggaaagccatggttccagctctgcccaagtatgtcccaccaacctcacaaattaggaagctcagaacactggg----caccccactgtccagtccttcacctgaaacaacagagagcacctcacagtaaacaaaggtcagctctgctcccacctacttatgtggcagctgactcttacctgcaaatgccatatcctgcgttgtaggtcaaaccacacagcctaacacaaaacctgctgacggaagtgcatagaactatagaagcaaccccaaagaccctacctagtacaacactctccagatgagagggaaccagcataagaattctgccaccattaaaaatctgaaaggattgacatcatcaaaggcagactctagctttccagcaatggttcttaaccaaaatggaggcaggaggatgacagatgaggaattcaaagtatggatcacagggaaactcaatgagatccaaaataaggttgaaaatcactacaaagaaacctgtaaagcaatccaggaaataaaagaagatgcaaatgtcttaaaaagaaatcaatcagagcaatgaaaactataaaactcacttagggaatttcaaaatacaattgaatgctttctcaatagacaagaccaaacagaagaaagaatttcagagtttgaagattgttctttcaaactaactgagtcagacaaaaataaaac-aaaaaaaagaaatttaaaaattcttaaaattcctgaaacaaagtctccaag-acatatgggattatgtaaaatggcaaaacctatgaatgattggcattaatgagagagaaaaagaaaaagtaaaaaacctggaaaacatatttaagggaataatttgagaaattttcctttatcttgctagagaagtagacacacagatataataaatccagagaagacctgccagatcccatataaaatgaacatcaccaaggtatatagtgacgagaatgtccaaggtcaatgattaagaaaaagatctacaaaggcagctag-aaaaaaggatagatcacatacaaagggaaccccaacaggctaacagtaaacttctcagaggaaacattataaactta-tgggggccttctcagcagaaatcttacaggggacttatattcagcattttttaagaaaagaaactccaatcaagaatttcatacgccaccaaaccaagcttcataagttaacaagaactaaaaatctttttcagataagcaatagctaagggaattcattaccactcaactagccttacaagatgtccataatggatttctaaacatggaaagaataataactgctactacaaaaacacacttaaatacacagtccacagaccctatatagcaaccacacaatagaaactacaaagcaaccagctaacaactttacgatagaatcaaaatctcacgtattaatattaaccttgactgtgaatggtcttaacaccctacttcaaaggcacagagtggcaagttggataaaaaacaagactcactcatctgttgtcttcaagagaaccatctcacacgtaacgacactgatagactcaa-------ggtaggagaaagatctatcacccaaacagaagacaaaaaacatcaggggttactattattctatcagataaaatcgactttaaagcaacagcagtcaaaaaagggtaaagaagagctctatgcagtaataaagggttagatctaaccatatggcttaactatcctgaatatacatgcacctaaaattggagcacctagattcataaaacaagtactgctagacctacaaaaaga--cagacagccacaccatgagagtgggtgacttcaacatcccactgacagagttagatcatcgaggcagaaaactaacaaagaaatcctggagttaaattcaacacttgaccaactggacataatagacatctacagaacactccacccagcaaccacagaatatacattattctcatttgcatagggaagatatgctaagattgaccacatgcttggacataaggc-----------aagtgaaaaaattcaaaatcataccaactatgcttttgggtcacagtggaataaaaatacaaatcaataccaataagttctctcaaaaccacaaaattacatagaaataaaagaactttcttgtgagtaattttattgtttttgggtaaacaataaaattaaggaaaaaatttagaaaattatttaaaataaataaaaacagag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29495251 3341 - 170955103 GGTGCCACTCCTTCCTCTTTGGACACCTCAACCTGCACCTCCGGATATAATTTCTAAGATTAATTACTGAGACACACAAATAAATCTGGTGAGATTTTACATGGTTTAGAATAAAGTCCAAAGAGGCTGTTGGATATAGTGG-TTTTCCCACTTCTTTCTAGAACTCACAGATGGAAAAGAAAAATGCAGAAATATGACACTCATTACCAAGTGACTCGTCAACACTCATATACTGATGTGTAttttgttttgtttgtttgtttagaaacagagtcttgctatgttgcccaggctggagtgcagtggtgattcacaggtgtgatcatggctcactacagcctcaaactcctgggctcatcctcccacctcagcatactgaggagctaggactgctggcatgtgccatcataccctgttaaatgatatgtattttAATTAGGGTAGAACTCTCAGTTATTTCCAAAGCTATTTCTTATACTGTATTTAAATCTTAAACTTAATTCTGAAGAAGAAATAATGAATAAATGAATCACtt-tttt---ttgagactgtgtctcgctctgtcaccagcccagagtgcagtggccctttctcggctcactgcaatctccacctcccgggttcaagcgattatcctgttgtgagccttccgagtagctgggactacaggcccgtgcgccaccacacccagctaatttttgtatttctagtagagacggtgcttctccatgttggccaggatggtctc-----cctgacctcgtgatccgcccgcctaggcctctcaaaatgctgggattacaggcgtgagccaccgcgccaggccATAACTTATTTTTAATATCTCTTGACTGCAGCCGCTCACCACAATTTGCATTTTCCAAATGGTTATGGAggttcaagatggctgactggaagcagctagtgtgtgctgctctcacagagaggaaagacagtggcgagtaaatagtagttcttcaggtgaattctctaagacagcatgtcaagattcaccaaggaagtg-gggggCTCGcaaagacctcaccacattttaccaggagcttctcctagccacacccatcagggctggtgcctgtacttgtcattgagatattcatgggaaagccatggttccagctctgcccaagtatgtcccaccaacctcacaaattaggaagctcagaacactggg----caccccactgtccagtccttcacctgaaacaacagagagcacctcacagtaaacaaaggtcagctctgctcccacctacttatgtggctgctgactcttacctgcaaatgccatatccagcgttgtaggtcaaaccacacagcctaacacaaaacctgctgacggaagtgcatagaactatagaagcaaccccaaagaccctacctagtacaacactctccagatgagagggaaccagcataagaattctgccaccattaaaaatctgaaaggattgacatcatcaaaggcagactctagctttccagcaatggttcttaaccaaaatggaggcaggaggatgacagatgaggaattcaaagtatggatcacagggaaactcaatgagatccaaaataaggttgaaaatcactacaaagaaacctgtaaagcaatccaggaaataaaagaagatgcaaatgtcttaaaaagaaatcaatcagagcaatgaaaactataaaactcacttagggaatttcaaaatacaattgaatgctttctcaatagacaagaccaaacagaagaaagaatttcagagtttgaagattgttctttcaaactaactgagtcagacaaaaataaaac-aaaaaaaagaaatttaaaaattcttaaaattcttgaaacaaagtctccaag-acatatgggattatgtaaaatggcaaaacctatgaatgattggcattaatgagagagaaaaagaaaaagtaaaaaacctggaaaacatatttaagggaataatttgagaaattttcctttatcttgctagagaagtagacacacagatataataaatccagagaagacctgccagatcctatataaaatgaacatcaccaaggtatatagtgacgagaatgtccaaggtcaatgattaagaaaaagatctacaaaggcagctagaaaaaaaggatagatcacatacaaagggaaccccaacaggctaacagtaaacttctcagaggaaacattataaactta-tgggggctttctcagcagaaatcttacaggggacttatattcagcattttttaagaaaagaaactccaatcaagaatttcatacgccaccaaaccaagcttcataagttaacaagaactaagaatctttttcagataagcaatagctaagggaattcattaccactcaactagccttacaagatgtccataatggatttctaaacatggaaagaataataactgctactacaaaaacacacttaaatacacagtccacagaccctatatagcaaccacacaatagaaactacaaagcaaccagctaacaactttacgatagaatcaaaatctcacgtattaatattaaccttgactgtgaatggtcttaacaccctacttcaaaggcacagagtggcaagttggataaaaaacaagactcactcatctgttgtcttcaagagaaccatctcacacgtaacgacactgatagactcaa-------ggtaggagaaagatctatcacccaaacagaagacaaaaaacatcaggggttactattattctatcagataaaatcgactttaaagcaacagcagtcaaaaaagggtaaagaagagctctatgcagtaataaagggttagatccaaccatatggcttaactatcctgaatatacatgcacctaaaattggagcacctagattcataaaacaagtactgctagacctacaaaaaga--cagacagccacaccatgagagtgggtgacttcaacatcccactgacagagttagatcattgaggcagaaaactaacaaagaaatcctggagttaaattcaacacttgaccaactggacataatagacatctacagaacactccacccagcaaccacagaatatacattattctcatttgcatagggaagatatgctaagattgaccacatgcttggacataaggc-----------aagttaaaaaattcaaaatcatacaaactatgcttttgggtcacagtggaataaaaatacaaatcaataccaataagttctctcaaaaccacaaaattacatagaaataaaagaactttcttgtgagtaattttattgtttttgggtaaacaataaaattaaggaaaaaatttagaaaattatttaaaataaataaaaacagag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2482932 3342 -   2996164 GGTGCCACTCCTTCCTCTTTGGACACCTCAACCTGCACCTCCGGATATAATTTCTAAGATTAATTACTGAGACACACAAATAAATCTGGTGAGATTTTACATGGTTTAGAATAAAGTCCAAAGAGGCTGTTGGATATAGTGG-TTTTCCCACTTCTTTCTAGAACTCACAGATTGAAAAGAAAAATGCAGAAATATGACACTCATTACCAAGTGACTCGTCAACACTCATATACTGATGTGTAttttgttttgtttgtttgtttagaaacagagtcttgctatgttgcccaggctggagtgcagtggtgattcacaggtgtgatcatggctcactatagcctcaaactcctgggctcatcctcccacctcagcatactgaggagctaggactgctggcatgtgccatcataccctgttaaatgatatgtattttAATTAGGGTAGAACTCTCAGTTATTTCCAAAGCTATTTCTTATACTGTATTTAAATCTTAAACTTAATTCTGAAGAAGAAATAATGAATAAATGAATCACtt-tttt---ttgagactgtgtctcgctctgtcaccagcccagagtgcagtggccctttctcggctcactgcaatctccacctcctgggttcaagcgattatcctgttgtgagccttccgagtagctgggactacaggcccgtgcgccaccacacccagctaatttttgtatttctagtagagacggtgcttctccatgttggccaggatggtctc-----cctgacctcgtgatccgcccgcctaggcctctcaaaatgctgggattacaggcgtgagccaccgcgccaggccATAACTTATTTTTAGTATCTCTTGACTGCAGCCGCTCACCACAATTTGCATTTTCCAAATGGTTATGGAggttcaagatggctgactggaagcagctagtgtgtgctgctctcacagagaggaaagacagtggcgagtaaatagtagttcttcaggtgaattctctaagacagcatgtcaagattcaccaaggaagtg-gggggCTCGcaaagacctcaccacattttaccaggagcttctcctagccacacccatcagggctggtgcctgtacttgtcattgagatattcatgggaaagccatggttccagctctgcccaagtatgtcccaccaacctcacaaattaggaagctcagaacactggg----caccccactgtccagtccttcacctgaaacaacagagagcacctcacagtaaacaaaggtcagctctgctcccacctacttatgtggcagctgactcttacctgcaaatgccatatcctgcgttgtaggtcaaaccacacagcctaacacaaaacctgctgacggaagtgcatagaactatagaagcaaccccaaagaccctacctagtacaacactctccagatgagagggaaccagcataagaattctgccaccattaaaaatctgaaaggattgacatcatcaaaggcagactctagctttccagcaatggttcttaaccaaaatggaggcaggaggatgacagatgaggaattcaaagtatggatcacagggaaactcaatgagatccaaaataaggttgaaaatcactacaaagaaacctgtaaagcaatccaggaaataaaagaagatgcaaatgtcttaaaaagaaatcaatcagagcaatgaaaactataaaactcacttagggaatttcaaaatacaattgaatgctttctcaatagacaagaccaaacagaagaaagaatttcagagtttgaagattgttctttcaaactaactgagtcagacaaaaataaaacaaaaaaaaagaaatttaaaaattcttaaaattcttgaaacaaagtctccaag-acatatgggattatgtaaaatggcaaaacctatgaatgattggcattaatgagagagaaaaagaaaaagtaaaaaacctggaaaacatatttaagggaataatttgagaaattttcctttatcttgctagagaagtagacacacagatataataaatccagagaagacctgccagatcctatataaaatgaacatcaccaaggtatatagtgacgagaatgtccaaggtcaatgattaagaaaaagatctacaaaggcagctagaaaaaaaggatagatcacatacaaagggaaccccaacaggctaacagtaaacttctcagaggaaacattataaactta-tgggggctttctcagcagaaatcttacaggggacttatattcagtattttttaagaaaagaaactccaatcaagaatttcatacgccaccaaaccaagcttcataagttaacaagaactaagaatctttttcagataagcaatagctaagggaattcattaccactcaactagccttacaagatgtccataatggatttctaaacatggaaagaataataactgctactacaaaaacacacttaaatacacagtccacagaccctatatagcaaccacacaatagaaactacaaagcaaccagctaacaactttacgatagaatcaaaatctcacgtattaatattaaccttgactgtgaatggtcttaacaccctacttcaaaggcacagagtggcaagttggataaaaaacaagactcactcatctgttgtcttcaagagaaccatctcacacgtaacgacactgatagactcaa-------ggtaggagaaagatctatcacccaaacagaagacaaaaaacatcaggggttactattattctatcagataaaatcgactttaaagcaacagcagtcaaaaaagggtaaagaagagctctatgcagtaataaagggttagatccaaccatatggcttaactatcctgaatatacatgcacctaaaattggagcacctagattcataaaacaagtactgctagacctacaaaaaga--cagacagccacaccatgagagtgggtgacttcaacatcccactgacagagttagatcatcgaggcggaaaactaacaaagaaatcctggagttaaattcaacacttgaccaactggacataatagacatctacagaacactccacccagtaaccacagaatatacattattctcatttgcatagggaagatatgctaagattgaccacatgcttggacataaggc-----------aagttaaaaaattcaaaatcatacaaactatgcttttgggtcacagtggaataaaaatacaaatcaataccaataagttctctcaaaaccacaaaattacatagaaataaaagaactttcttgtgagtaattttattgtttttgggtaaacaataaaattaaggaaaaaatttagaaaattatttaaaataaataaaaacagag
i macNem1.NW_012011356v1   C 0 C 0
s colAng1.NW_012115566v1    2388818 3360 -   3067355 GGTGCCACTCCTTCCTCTTTGGACACGTCAACCTGCACCTCCAGATATAATTTCTAAGATTAATTACTGAGACACACAAATAAATCTGGTGAGATTTTACATGGTTTAGAATAAAGTCCAAAGAGGTTGTTGGATATAGTGG-TTTTCCCACTTCTTTCTAGAACTCACAGATGGAAAAGAAAAATGCAGAAATATGACACTCATTACCAAGTGACTCGTCAGCACTCATATACTGATGTGTAttttgttttgtttgtttgtttagagacagagtcttgctatgttgcccaggctggagtgcagtggtgattcacaggtgtgatcatggctcactacagcctcaaactcctgggctcatcctcccacctcagcatactgaggagctaggactgctgacatgtgccatcatacccagttaaatgatatgtattttAATTAGGGTAGAACTCTCAGTTATTTCCAAAGCTATTTCTTATACTGTATTTAAATCTTAAACTTAATTCTGAAGAAGAAATAATGAATAAACGAATCACTTGtttt---ttgagaccgtgtctccctctgtcgccaacccagaatacagtggccctttctcggctcactgcaatctccacttcccgggttcaagtgattctcctgttgtgagcctccggagtagctgggactacaagcccgtgcgccaccacacccagctaatttttgtatttctagtagagatggtgtttctccatgttggccaggatggtctc-----cctgacctcgtgatctgcccgcctaggcctcccgaaatgctgggattacaggcatgagccaccgcgcccggccATAACTTATTTTTAATATCTCTTGACTGCAGCTGCT-ACCACAATTTGCATTTTCAAAATGGTTATGGAggttcaagatggctgactggaagcagctagtgtgtgctgctctcacagagaggaaagaaagtggcgagtaaatagtagctcttcaggtgaattctctaagacagcatgtcaagattcaccaaggaaatg-gggggCTCGcaaagacctcagcacattttaccaggagcttctcctagccacacccatcagggctggtgcctgtacctgtcattgagatattcatgggaaagccgtggttccagctctgcccaggtatgtcccacaaacgtcacaaattaggaagcacagaacactgag----caccccaccgtccagtccttcacctgaaaca--agagagcacctcacagtaaacaaaggtcagctctgctcccacctacttatgtggcagctgactcttacctgcaaatgccatatcctgcgttgtaggtcaaaccacacagcctaatacaaaacctgctgacagaagtgcacagaactatagaagcagtcccaaagaccctacctagtacaacactctccagatgagaaggaaccagcataagaattctgccaccattaaaaatctgaaaggattgacatcatcaaaggctgactctagctttccagcaatggttcttaaccaaaatggaggcaggaggatgacagatgaggaattcaaagtatggatcacagggaaactcaatgagatccaaaat-aggttgaaaatcactacaaagaaacctgtaaagcaatccaggaaataaaagaagatgcaaacgtcttaaaaagaaatcaatcagagcaatgaaaactataaaactcacttagggaatttcaaaatacaattgaatgctttctcaatagacaagaccaaacggaagaaagaatttcagagtttgaagattgttctttcgaactaactgagtcagacaaaaataaaataaaaaaaaagaaatttaaaaattcttaaaattcttgaaacaaagtctccaagaacatatgggattatgtaaaatgacaaaacctatgaatgattggcattaatgagagagaaaaagaaaaagtaaaaaacctggaaaacatatttaagggaataatttgagaaattttcctttatcttgctagagaagtagacacacagatataataaatccagagaaaacctgccagatcctaaataaaatgaacatcaccaaggtatatagtaaccagaatgtccaaggtcaatgcttaagaaaaacatctaaagaggcagctagaaaaaaaggatagatcacatacaaagggaaccccaacaggctaacagtaaacttctcagaggaaacattataaactta-tgggggccttcccagcagaaatcttacaggggatttatattcagcatttttaaagaaaagaaactccaatcaagaatttcataccctaccaaaccaagcttcataagttaacaagaactaaaaatctttttcagataagcaatagctaagggaattcattaccactcaactagccttacaagatgtccacaatggatttctaaacatggaaaaaataataactgctactacaaaaacacacttaaatacatagtccacagaccgtatatagcaaccacacaatagaaactacaaagcaaccagctaacaactttacgatagaatcaaaatctcacatattaatattaaccttgaatgtgaatggttttaacaccctacttcaaaggcacagagtggcaagttggataaaaagcaagactcactcatctgttgtcttcaagagaaccatctcacacgtaacgacactgatagactcaaggtaaagggtaggagaaagatctatcacccaaacagaagacaaaaaacagcaggggttactattattctatcagataaaatcgactttaaagcaaccgcagtcaaaaaagggtaaagaagggctctatgcagtaataaagggttagatccaatcatacggcttaactatcctgaatatacatgcacctaaaattggagcacttatattcgtaaaacaagtacttctagacctacaaaaagatgtagatagccacaccatgagagtgggtgacttcaacctcccactgacagagttagatcatcgagacagaaaactaacaaagaaatcctggagttaaattcaacacttgaccagttggacataatagacatctacagaacactccacccagcaaccacagaatatacattattctcatttgcatagagaagatatgctaagattgaccacatgcttggacataaggcaagtctcaataaagttaaaaaattcaaaatcatacaaactatgcttttgggccacagtggaataaaaatacaaatcaataccaataagttctctcaaaaccacaaatttacatagaaatgaaagaactttcctctgagtaattttattgcttttgggtaaacaataaaattaaggcaaaaatttagaaaattatttaaaataaataaaagcagaa
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35            26144709 15139 +  26524999 I
e otoGar3.GL873742          1984945 3707 -   2232465 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e chlSab2.chr17            28747677  870 -  71996105 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=24435.000000
s hg38.chr6_GL000254v2_alt   600560 13 +   4827813 atacaatatttta
s panTro5.chr6             29572912 13 + 175400573 acacaatatttta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29811151 13 + 173848474 acacaatatttta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5613982 13 +   6154872 acacaatatttta
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29836267 13 + 172585720 acacaatatttta
i rheMac8.chr4             C 0 I 6503
s macFas5.chr4             29498592 13 - 170955103 acacaatatttta
i macFas5.chr4             C 0 I 7158
s macNem1.NW_012011356v1    2486274 13 -   2996164 acacaatatttta
i macNem1.NW_012011356v1   C 0 I 5981
e canFam3.chr35            26144709 15139 +  26524999 I
e otoGar3.GL873742          1984945 3707 -   2232465 I
e colAng1.NW_012115566v1    2392178  0 -   3067355 C
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e chlSab2.chr17            28747677 870 -  71996105 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=270835.000000
s hg38.chr6_GL000254v2_alt   600573 492 +   4827813 -ttttttatttttacttttttatatacata-ttttattatactttaagttctagggtacatgtgcacaacgtgcaagtttgctacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatatctcctaatgctatccctgcctcctccgcccaccccacgacaggccccggtgtgtgatgttccccttgctgtgtccaagtgttctcattgttcaattcccacctatgagtgagaacatgtggtgtttggtttttttgtccttgcaatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattcctttgtatataaatgccacattttcttaatccagtctatcactgatggacatttgggttggttccaagtctttgctattgtgagtagtgctgctataaacatacgtgtgcatg
s panTro5.chr6             29572925 494 + 175400573 tttttttatttttacttttttatatacatatttttattgtactttaagttctagggtacatgtgcacaacatgcaagtttgctacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatatctcctaatgctatccctgcctcctccgcccaccccatgacaggccccggtgtgtgatgttccccttgctgtgtccaggtgttctcattgttcaattcccacctatgagtgagaacatgtggtgtttggtttttttgtccttgcaatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccttggtatatatatgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgagtagtgctgctataaacatacgtgtgcatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29811164 492 + 173848474 -tttttta-ttttacttttttatatacatatttttattgtactttaagttctagggtacatgtgcacaacatgcaagtttgctacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatatctcctaatgctatccctgcctcctccgcccaccccatgacaggccccggtgtgtgatgttccccttgctgtgtccaggtgttctcattgttcaattcccacctatgagtgagaacatgtggtgtttggtttttttgtccttgcaatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccttggtatatatatgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgagtagtgctgctataaacatacgtgtgcatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5613995 494 +   6154872 tttttttatttttacttttttacatacatatttttattatactttaagttctagggtacatgtgcacaacgtgaaaggttgctacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatatctcctaatgctatccctgcctcctccgcccaccccatgacaggccccggtgtgtgatgttccccttgctgtgtccaagtgttctcattgttcaattcccacctatgagtgagaacatgtggtgtttggtttttttgtccttgcaatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccttggtatatatatgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgagtagtgctgctataaacatacgtgtgcatg
i gorGor5.CYUI01015250v1   C 0 C 0
e canFam3.chr35            26144709 15139 +  26524999 I
e otoGar3.GL873742          1984945 3707 -   2232465 I
e colAng1.NW_012115566v1    2392178   0 -   3067355 C
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e chlSab2.chr17            28747677 870 -  71996105 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I
e macNem1.NW_012011356v1    2486287 5981 -   2996164 I
e macFas5.chr4             29498605 7158 - 170955103 I
e rheMac8.chr4             29836280 6503 + 172585720 I

a score=2910.000000
s hg38.chr6_GL000254v2_alt   601065 3 +   4827813 gag
s panTro5.chr6             29573419 3 + 175400573 gag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29811656 3 + 173848474 gag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5614489 3 +   6154872 gag
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            28748547 3 -  71996105 gag
i chlSab2.chr17            I 870 C 0
e canFam3.chr35            26144709 15139 +  26524999 I
e otoGar3.GL873742          1984945 3707 -   2232465 I
e colAng1.NW_012115566v1    2392178 0 -   3067355 C
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I
e macNem1.NW_012011356v1    2486287 5981 -   2996164 I
e macFas5.chr4             29498605 7158 - 170955103 I
e rheMac8.chr4             29836280 6503 + 172585720 I

a score=279748.000000
s hg38.chr6_GL000254v2_alt   601068 206 +   4827813 acacaatattttaaaatctctggaatacagctaaagcagtgttaggaaagcttacatcactaaatacctacatcaaaaaattagaaagatctcaaattaacaatctaacatcacacctagagaactagaaaaacaagaactagtcccaaagctagaagacaataaataaccaaaattcattagagaactgaatgaaattgagactc
s panTro5.chr6             29573422 206 + 175400573 acacaatattttaaaatctctggaatacagctaaagcagtgttaggaaagcttacatcactaaatacctacatcaaaaaattagaaagatctcaaattaacaatctaacatcacacctagagaactagaaaaacaagaactagtcccaaagctagaagacaataaataaccaaaattcattagagaactgaatgaaattgagactc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29811659 204 + 173848474 --acaatattttaaaatctctggaatacagctaaagcagtgttaggaaagcttacatcactaaatacctacatcaaaaaattagaaagatctcaaattaacaatctaacatcacacctagagaactagaaaaacaagaactagtcccaaagctagaagacaataaataaccaaaattcattagagaactgaatgaaattgagactc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5614492 206 +   6154872 acacaatattttaaaatctctggaatacagctaaagcagtgttaggaaagcttacatcactaaatacctacatcaaaaaattagaaagatctcaaattaacaatctaacatcacacctagagaactagaaaaacaagaactagtcccaaagctagaagacaataaataaccaaaattcattagagaactgaatgaaattgagactc
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            28748550 206 -  71996105 acacaatattttaaaatctctggaatatagctaaaactgtgttaggaaagcttacatcactaaatacctacatcaagaaattagaaagatctcaaattaacaatctaacattacacctagagaactagaaaaacaagaactagtcccaaagctagaagacaataaataaccaaagttcgttagagaactgaatgaaattgagactc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2392178 206 -   3067355 acacaatattttaaaatctctagaatatagctaaaactgtgttaggaaagcttacatcactaaatacctacatcaagaaattagaaagatctcaaattaacaatctaacatcacacctagagaactagaaaaacaagaactagttccaaagctagaagacaataaataaccaaagttcgttagagaactgaatgaaattgagactc
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35            26144709 15139 +  26524999 I
e otoGar3.GL873742          1984945 3707 -   2232465 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I
e macNem1.NW_012011356v1    2486287 5981 -   2996164 I
e macFas5.chr4             29498605 7158 - 170955103 I
e rheMac8.chr4             29836280 6503 + 172585720 I

a score=4951797.000000
s hg38.chr6_GL000254v2_alt   601274 1607 +   4827813 aaaaatacatgcaaagtaataaccgaaagctgg----ttcttgtcaaccagatcaataggacaccagctaaattaacaacaa--agaaagagaagatctaaataagtgcaatcagaaatggcaaaagtgaaataacaaccaatcccacggatatataaaaaatcctcagagactattatgaacaccactatgcacacaaactagaaactctagaggaaatgaataaattcctggaaggtcacaacaccccaagattgagccaggaagaaatcaaaaccctggagagatcaatatagagttctgaaattgaaaaacaaacctaccaaataaaaagggccctgaaacaggtggattcatagccaaattctaccagatgtacaaagaaaagctggtaccaatcctactgaaata-ttttttaaa-aatggggaagaggactcctccctaactcattctacgaagccagcatcactctgataccaaaatctagtaaagacacaacaacaaaagagaaaattacagacaaatatccctgatgaacatagatgcaaaatttctcaataaaatactagcagatggaatccagcagcacatcaaaaagctaattcaccactatcatgcaggcttcactaccagtacgcaaggttggttcaacatatgcaaatcaataaacatgacttgctgcataaacaattaaaaacaaaaccatttaatcatctcaatgaatgcagaaaaaatgttttgataaaatccaacatcccttcatgaaaaaaatcctcaacatactaggcatggaagaaacatacctcaagataataagagcccactatgacaaacccacagccaacattatactgaattggcaaaagctggaagtgttacacttaagaactggaacaggccaaggatgccaactctcaccattcctattcaacatagtgctggaaatcctagtcagaacaatcaggcaagagaaagaaataaaaagcaacaaaataggaaaagaggaagtcaaattatctccttgctgacaatacgattctatacctagaaaaccttaatgactttgccaaaaggcttgtagagctgataaaaacttcagtaaagtttcaggatacaaaatcaatgtacaaatcagtagtatttctatataccaataacattgaagctgaatgccaaatcaataatacaatccgattcacaatagccacaaaaagaataaagtatgttggaatccacgtaaccaaagcagtgaatgatttctttgaggaaaactacaaaatactgaagaaagaaatcatagaggatacaaataaatggggaaaaaaacccatgctcatggattggaagaatttatattgttaaaatgaccatactctccaaagcaatctacacgttcaatgctattcctatcaaactaccaatattgtttttcacagaattag---aaaaaatattctaaacttcatttgaaatcaagaaagagcccaaatagcaaaagcaatactaagcaaaaagaaaaatactggaggcatcatactacccaacttcaaactatattacaaggctacattaaccaaaacaacatgatagtggtacaaaaacagacacataggcca
s panTro5.chr6             29573628 1607 + 175400573 aaaaatacatgcaaagtaataaccgaaagctgg----ttcttgtcaaccagatcaataggacaccagctaaattaacaacaa--agaaagagaagatctaaataagtgcaatcagaaatggcaaaagtgaattaacaaccaatcccacggatatataaaaaatccccagagactattatgaacaccactatgcacacaaactagaaactctagaggaaatgaataaattcctggaaggtcacaacaccccaagattgagccaggaagaaatcaaaaccctggagagatcaatatagagttctgaaattgagaaacaaacctaccaaataaaaagggccctgaaacaggtggattcatagccaaattctaccagatgtacaaagaaaagctggtaccaatcctactgaaata-tttttttaa-aatggggaagaggactcctccctaactcattctacgaagccagcatcactctgataccaaaatctagtaaagacacaacaacaaaagagaaaattacagacaaatatccctgatgaacatagatgcaaaatttctcaataaaatactagcagatggaatccagcagcacatcaaaaagctaattcaccactatcatgcaggcttcactaccagtacgcaaggttggttcaacatatacaaatcaataaacatgacttgccgcataaacaattaaaaacgaaaccatttaatcatctcaatgaatgcagaaaaaatgttttgataaaatccaacatcccttcatgaaaaaaatcctcaacatactaggcatggaagaaacatacctcaagataataagagcccactatgacaaacccacagccaacattatactgaattggcaaaagctggaagtgttacacttaagaactggaacaggccaaggatgccaactctcaccattcctattcaacatagtgccggaaatcctagtcagaacaatcaggcaagagaaagaaataaaaagcaacaaaataggaaaagaggaagtcaaattatctccttgctgacaatatgattctatacctagaaaaccttaaagactttgccaaaaggcttgtagagctgataaaaacttcagtaaagtttcaggatacaaaatcaatgtacaaatcagtagtatttctatataccaataacattgaagctgaatgccaaatcaataatacaatccaattcacaatagccacaaaaagaataaagtatgttggaatccacgtaaccaaagcagtgaatgatttctttgaggaaaactacaaaatactgaagaaagaaatcatagaggatacaaataaatggggaaaaaaacccatgctcatggattggaagaatttatattgttaaaatgaccatactctccaaagcaatctacacgttcaatgctattcctatcaaactaccaatattgtttttcacagaattag---aaaaaatattctaaacttcatttgaaatcaagaaagagcccaaatagcaaaagcaatactaagcaaaaagaaaaatgctggaggcatcatactacccaacttcaaactatattacaaggctacattaaccaaaacaacatgatagtggtacaaaaacagacacataggcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29811863 1607 + 173848474 aaaaatacatgcaaagtaataaccgaaagctgg----ttcttgtcaaccagatcaataggacaccagctaaattaacaacaa--agaaagagaagatctaaataagtgcaatcagaaatggcaaaagtgaattaacaaccaatcccacggatatataaaaaatcctcagagactattatgaacaccactatgcacacaaactagaaactctagaggaaatgaataaattcctggaaggtcacaacaccccaagattgagccaggaagaaatcaaaaccctggagagatcaatatagagttctgaaattgagaaacaaacctaccaaataaaaagggccctgaaacaggtggattcatagccaaattctaccagatgtacaaagaaaagctggtaccaatcctactgaaata-tttttttaa-aatggggaagaggactcctccctaactcattctacgaagccagcatcactctgataccaaaatctagtaaagacacaacaacaaaagagaaaattacagacaaatatccctgatgaacatagatgcaaaatttctcaataaaatactagcagatggaatccagcagcacatcaaaaagctaattcaccactatcatgcaggcttcactaccagtatgcaaggttggttcaacatatgcaaatcaataaacatgacttgccgcataaacaattaaaaacgaaaccatttaatcatctcaatgaatgcagaaaaaatgttttgataaaatccaacatcccttcatgaaaaaaatcctcaacatactaggcatggaagaaacatacctcaagataataagagcccactatgacaaacccacagccaacattatactgaattggcaaaagctggaagtgttacacttaagaactggaacaggccaaggatgccaactctcaccattcctattcaacatagtgctggaaatcctagtcagaacaatcaggcaagagaaagaaataaaaagcaacaaaataggaaaagaggaagtcaaattatctccttgctgacaatatgattctatacctagaaaaccttaaagactttgccaaaaggcttgtagagctgataaaaacttcagtaaagtttcaggatacaaaatcaatgtacaaatcagtagtatttctatataccaataacattgaagctgaatgccaaatcaataatacaatccgattcacaatagccacaaaaagaataaagtatgttggaatccacgtaaccaaagcagtgaatgatttctttgaggaaaactacaaaatactgaagaaagaaatcatagaggatacaaataaatggggaaaaaaacccatgctcatggattggaagaatttatattgttaaaatgaccatactctccaaagcaatctacacgttcaatgctattcctatcaaactaccaatattgtttttcacagaattag---aaaaaatattctaaacttcatttgaaatcaagaaagagcccaaatagcaaaagcaatactaagcaaaaagaaaaatgctggaggcatcatactacccaacttcaaactatattacaaggctacattaaccaaaacaacatgatagtggtacaaaaacagacacataggcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5614698 1612 +   6154872 aaaaatacatgcaaagtaataaccgaaagctggttctttcttgtcaaccagatcaataggacaccagctaaattaacaacaa--agaaagagaagatctaaataagtgcaatcagaaatggcaaaagtgaaataacaaccaatcccacggatatataaaaaatcctcagagactattatgaacaccactatgcacacaaactagaaactctagaggaaatgaataaattcctggaaggtcacaacaccccaagattgagccaggaagaaatcaaaaccctggagagatcaatatagagttctgaaattgaaaaacaaacctaccaaataaaaagggccctgaaacaggtggattcatagccaaattctaccagatgtacaaagaaaagctggtaccaatcctactgaaata-ttttttaaa-aatggggaagaggactcctccctaactcgttctacgaagccagcatcactctgataccaaaatctagtaaagacacaacaagaaaagagaaaattacagacaaatatccctgatgaacatagatgcaaaatttctcaataaaatactagcagatggaatccagcagcacatcaaaaagctaattcaccactatcatgcaggcttcactaccagtacgcaaggttggttcaacatatgcaaatcaataaacatgacttgctgcataaacaattaaaaacaaaaccatttaatcatctcaatgaatgcagaaaaaatgttttgataaaatccaacatcccttcatgaaaaaaatcctcaacatactaggcatggaagaaacatacctcaagataataagagcccactatgacaaacccacagccaacattatactgaattggcaaaagctggaagtgttacacttaagaactggaacaggccaaggatgccaactctcaccattcctattcaacatactgctggaaatcctagtcagaacaatcaggcaagagaaagaaataaaaagcaacaaaataggaaaagaagaagtcaaattatctccttgctaacaatacgattctatacctagaaaaccttaaagactttgccaaaaggcttgtagagctgataaaaacttcagtaaagtttcaggatacaaaatcaatgtacaaatcagtagtatttctatataccaataacactgaagctgaatgccaaatcaataatacaatccaatttacaatagccacaaaaagaataaagtacgttggaatccacataaccaaagcagtgaatgatttctttgaggaaaactacaaaatactgaagaaagaaatcatagaggatacaaataaatggggaaaaaaatccatgctcatggaatggaagaatttatattgttaaaatgaccatactgtccaaagcaatctacacgttcaatgctattcctatcaaactaccaatattgtttgtcacagaattag--aaaaaaatattctaaacttcatttgaaatcaagaaagagcccaaatagcaaaagcaatactaagcaaaaagaaaaatgatggaggcatcatactacccaacttcaaactatattacaaggctacattaaccaaaacaacatgatagtggtacaaaaacagacacataggcca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29842783 1602 + 172585720 aaaaatacatgcaaagtaataaccaaaagcttg----ttcttgtcaacaagatcaatagaacaccagctaaattaacaacaacaacaaaaaagagatctaaataagtgcaatcagaaatggcaaaagtgaaataacaaccaattccatggaaatataaaaaattctcagaaactattatgaacaccactatgcacacaaactagaaactctcgaggaaatgaataaattccttgaaggtcacaacaccccaagattgagccaggaagaaatcaaaaccatggagagatcaatttagagttctgaaattgaaaaacaaacctacaaaataaaaagggccctgaaacaggtgtattcatagccaaattctaccagatgtacaaagaaaagctggtaccaatcccactgaaatattttttttacaaatggggaagaggactcctccctaatttgttctacgaagccagtatcactctgataccaaaatctagtaaagacacaacaacaaaatagaaaattacagacaaatatccctgatgaacgtagatgcaacatttctcaataaaatactagcagacggactccagcaacacatcaaaaagctaattcaccactctcatgcagacttcactaccagtttgcaaggtttgttcaacatatgcaaatcaataaacatgactcgccacataaacaattaaaaacaaaaccgtttaattatctcaataaatgcag-aaaaatgttttgataaaatccaacataccttcataaaaaaaatcctcaacatactaggcatggaagaaacatacctcgagatagtaagagccaactatgaaaaacccacagccaaca------tggatgggcaaaagctggaagtgttacacttaagaactggaacaggtcaaggatgccaactctcaccattcctattgagcatagtactggaagtcctagtcacaggaatcaggcaagagaaagaaataaaaagcaaccaaataggaaaagaggaagtc--attatctccttgctgacgatatgattctatacgtagaaaaccttaaaga--ctgccaaaaggcttgtagagctgataaaaacttcaataaagtttcaggatacaaaatcaatgtacaaatcagtgatatttctatataccaataacactgaacctgaatgccaaatcaataatacaatcctgtttacaatagccacagaaagaataaagtatgttggaatccatgtaaccaaagaagtgaatgatttctttgaggaaaactacaaaatactgaagaaagaaatcatagaggatacaaataaat-ggggaaaaaacccacgctcatggattggaagaatttatattgttaaaatgatcatactgttcaaagcaatccacaggttcaatgctattcctatcaaactaccaatattgtttttcacagaattggaaaaaaaaatattctaaaattcctttgaaatcaagaaagagcccaaatagcaaaagcaatactaagcaaaaagagaaatgctggaggcatcatactacccaacttcaaactatattacaaggctacattaaccaaaacaacatggtagtggtacaaaaacagacatataggcca
i rheMac8.chr4             I 6503 C 0
s macFas5.chr4             29505763 1601 - 170955103 aaaaatacatgcaaagtaataaccgaaagcttg----ttcttgtcaacaagatcaatagaacaccagctaaattaacaacaacaacaaaaaagagatctaaataagtgcaatcagaaatggcaaaagtgaaataacaaccaattccatggaaatataaaaaattctcagaaactattatgaacaccactatgcacacaaactagaaactctcgaggaaatgaataaattccttgaaggtcacaacaccccaagattgagccaggaagaaatcaaaaccatggagagatcaatttagagttctgaaattgaaaaacaaacctacaaaataaaaagggccctgaaacaggtgtattcatagccaaattctaccagatgtacaaagaaaagctggtaccaatcctactgaaata-tttttttacaaatggggaagaggactcctccctaatttgttctacgaagccagtatcactctgataccaaaatctagtaaagacacaacaacaacatagaaaattacagacaaatatccctgatgaacgtagatgcaacatttctcaataaaatactagcagacggactccagcaacacatcaaaaagctaattcaccactatcatgcagacttcactaccagtttgcaaggtttgttcaacatatgcaaatcaataaacatgactcgccacataaacaattaaaaacaaaaccgtttaattatctcaataaatgcag-aaaaatgttttgataaaatccaacataccttcataaaaaaaatcctcaacatactaggcatggaagaaacatacctcgagatagtaagagccaactatgaaaaacccacagccaaca------tggatgggcaaaagctggaagtgttacacttaagaactggaacaggtcaaggatgccaactctcaccattcctattgagcatagtactggaagtcctagtcacaggaatcaggcaagagaaagaaataaaaagcaaccaaataggaaaagaggaagtc--attatctccttgctgacgatatgattctatacgtagaaaaccttaaaga--ctgccaaaaggcttgtagagctgataaaaacttcaataaagtttcaggatacaaaatcaatgtacaaatcagtgatatttctatataccaataacactgaacctgaatgccaaatcaataatacaatcctgtttacaatagccacagaaagaataaagtatgttggaatccatgtaaccaaagaagtgaatgatttctttgaggaaaactacaaaatattgaagaaagaaatcagagaggatacaaataaat-ggggaaaaaacccacgctcatggattagaagaatttatattgttaaaatgatcatactgtccaaagcaatccacaggttcaatgctattcctatcaaactaccaatattgtttttcacagaattggaaaaaaaaatattctaaaattcctttgaaatcaagaaagagcccaaatagcaaaagcaatactaagcaaaaagagaaatgctggaggcatcatactacccaacttcaaactatattacaaggctacattaaccaaaacaacatggtagtggtacaaaaacagacatataggcca
i macFas5.chr4             I 7158 C 0
s macNem1.NW_012011356v1    2492268 1600 -   2996164 aaaaatacatgcaaa-taataaccaaaagcttg----ttcttgtcaacaagatcaatagaacaccagctaaattaacaacaacaacaaaaaagagatctagataagtgcaatcagaaatggcaaaagtgaaataacaaccaattccatggaaatataaaaaattctcagaaactattatgaacaccactatgcacacaaactagaaactctcgaggaaatgaataaattccttgaaggtcacaacaccccaagattgagccaggaagaaatcaaaaccatggagagatcaatttagagttctgaaattgaaaaacaaacctacaaaataaaaagggccctgaaacaggtgtattcatagccaaattctaccagatgtacaaagaaaagctggtaccaatcctactgaaata-tttttttacaaatggggaagaggactcctccctaatttgttctacgaagccagtatcactctgatactaaaatctagtaaagacacaacaacaacatagaaaattacagacaaatatccctgatgaacgtagatgcaacatttctcaataaaatactagcagacggactccagcaacacatcaaaaagctaattcaccactatcatgcagacttcactaccagtttgcaaggtttgttcaacatatgcaaatcaataaacatgactcgccacataaacaattaaaaacaaaaccgtttaattatctcaataaatgcag-aaaaatgttttgataaaatccaacataccttcataaaaaaaatcctcaacatactaggcatggaagaaacatacctcgagatagtaagagccaactatgaaaaacccacagccaaca------tgtatgggcaaaagctggaagtgttacacttaagaactggaacaggtcaaggatgccaactctcaccattcctattgagcatagtactggaagtcctagtcacaggaatcaggcaagagaaagaaataaaaagcaaccaaataggaaaagaggaagtc--attatctccttgctgacgatatgattctatacgtagaaaaccttaaaga--ctgccaaaaggcttgtagagctgataaaaacttcaataaagtttcaggatacaaaatcaatgtacaaatcagtgatatttctatataccaataacactgaacctgaatgccaaatcaataatacaatcctgtttacaatagccacagaaagaataaagtatgttggaatccatgtaaccaaagaagtgaatgatttctttgaggaaaactacaaaatactgaagaaagaaatcatagaggatacaaataaat-ggggaaaaaacccacgctcatggattggaagaatttatattgttaaaatgatcatactgtccaaagcaatccacaggttcaatgctattcctatcaaactaccaatattgtttttcacagaattggaaaaaaaaatattctaaaattcctttgaaatcaagaaagagcccaaatagcaaaagcaatactaagcaaaaagagaaatgctggaggcatcatactacccaacttcaaactatattacaaggctacattaaccaaaacaacatggtagtggtacaaaaacagacatataggcca
i macNem1.NW_012011356v1   I 5981 C 0
s chlSab2.chr17            28748756 1595 -  71996105 aaaaatacatgcaaagtaataaccgaaagcttg----ttcttgtcaacaagatcaatagaacaccagctaaattaacaacaa----aaaaaggagatctaaataagtgcaatcagaaatggcaaaagtgaaataacaaccaattccatggaaatataaaaaattctcagaaactattatgaacatcactatgcacacaaactagaaactctcgaggaaatgaataaattccttgaaggtcacaacaccccaagattgagccaggaagaaatcaaaaccatggagagatcaatgtagagttctgaaattgaaaaacaaacctacaaaataaaaagggccctaaaacaggtgtattcatagcc-aattctaccagatgtacaaagaaaatctggtaccaatcctaatgaaata-ttttttaac-aatggggaagaggactcctccctaatttgttctacgaagccagtatcactctgataccaaaatctagtaaagacacaacaacaaaagagaaaattacagacaaatatccctgatgaaagtagatgcaaaatttctcaataaaatactagcagacggactccagcagcacatcaaaaagctaattcaccactatcatgcagacttcactaccagtttgcaaggttggttcaacacatgcaaatcaataaacatgactcgccacataaacaattaaaaacaaaaccatttaattatctcaataaatgcag-aaaaatgtttttataaaatccaacatatcttcat-aaaaaaatcctcaacatactaggcatggaagaaacataccttgagatagtaagagccaactatgaaaaacccacagccaaca------tggatgggcaaaagctagaagtgttacacttaagaactggaacaggccaaggatgccaactctcaccattcctattgaacatagtactggaagtcctagtaacaggaatcaggcaagagaaagaaataaaaagcaaccaaataggaaaagaggaagtc--attatctccttgctgacgatatgattctatacgtagaaaaccttaaagactctgccaaaaggcttgtagagctgataaaaacttcaataaagtttcaggatacaaaatcaatgtacaaatcagtggtatttctatataccaataacactgaagctgaatgccaaatcaataatacaatcctgtatacagtagccacaaaaagaataaagtacgttggaatccgtgtaaccaaagaagtgaatgatttctttgaggaaaactacaaaatactgaagaaagaaatcatagaggatacaaataaatagggaaaaaaacccacactcatggatcggaagaatttatattgttaaaatgatcatactgtccaaagcaatctacaggttcaatgctattcctatcaaactaccaatattgtttttcacagaattggaaaaaaaa--attctaaaattcctttgaaatcaagaaagagcccaaatagcaaaagcaatactaagcaaaaagagaaatgctggaggcatcatactacccaacttcaaactatattacaaggctacattaaccaaaacaacatggtagtggtacaaaaacagacacataggcca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2392384 1601 -   3067355 aaaaatacatgcaaagtaataaccgaaagctta----ttattgtcaacaagatcaatagaacaccagctaaatcaacaacaacaa-aaagagaagatctaaataagtgtaatcagaaatggcaaaagtgaaataacaaccaattccatggaaatataaaaaattctcagaaactattatgaacaccactatgcacacaaactagaaactctcgaggaaatgaataaattccttgaaggtcacaacaccccaagattgagccaggaagaaatcaaaaccatggagagaccaatatagaattctgaaattgaaaaacaaacctacgaaataaaaagggccctgaaacaggtgtattcatagccaaattctaccagatgtacaaagaaaagctggtaccaatcctactgaaata-tttttttaa-actggggaagaggactcctccctaattcgttctacgaagcctgtatcactctgataccaaattctagtaaagacacaacaacaaaagagaaaattacagacaaatatccctgatgaacatagatgcaaaatttctcaataaaatactagcagacggactccagcagcacatcaaaaagctaattcaccactatcatgcagacttcaccaccagtttgcaaggttggttcaacatatgcaaatcaataaacatgactcgccacataaacaattaaaaacaaaactgtttaattatctcaataaatgcag-aaaaatgttttgataaaatctaacataccttcataaaaaaaatcctcaacatactaggcatggaagaaacatacctcgagacaataagagccaactatgaaaaacccacagccaaca------tggatgggcaaaagctggaagtgttacacttaagaactggaacaggccaaggatgccaactctcaccattcctattgaacatagtactggaagtcctagtcacaggaatcaggcaagagaaagaaacaaaaagcaaccaaataggaaaagaagaagtcaaattatctccttgctgacgatatgattctatacgtagaaaaccttaaagactctaccaaaaggcttgtagagctgataaaaactttgataaag-ttcaggatacaaaatcaatgtacaaatcagtggtatttctatataccaataacactgaagctgaatgccaaatcaataatacaatcctgtttacaatagccacaaaaagaataaagtacattggaatccatgtaaccaaagaagtgaatgatttctttgaggaaaactacaaaatactgaagaaagaaatcatagaggatacaaataaatgggggaaaaaacccacactcatgggttggaagaatttatattgttaaaatgaccatactgttcaaagcaatctacaggttcaatgctattcctatcaaactaccaatattgtttttcacagaattggaaaaaaaa--attctaaaattcatttgaaatcaagaaagagcccaaatagcaaaagcaatactaagcaaaaagaaaagtgctggaggtatcatactacccaacttcaaactatattacaaggctacattaaccaaaacaacatggtagtggcacaaaaacagacacataggcca
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35            26144709 15139 +  26524999 I
e otoGar3.GL873742          1984945 3707 -   2232465 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=1315332.000000
s hg38.chr6_GL000254v2_alt   602881 370 +   4827813 aATGGGAGTCTCTTAGCAACTACTTTACTAATATTAATTTGCTTATATTTTGAAAAAGAGTATGGACCATGTCACTAAGCTGTTATGAGTTACATAACTGGCATGTGAAGTTGGTTGGTGGAGAGGAGAGACTGTGCTTCTATGGAATACAACCTCAGACTGCACTCTGATCCTAATCTCTGTCATGGCCCTATC-AATCACGAGCCATCTCC-GAGACTCATTCTGGCCAGACATTTAAAATACATTTTT-CAATGGAAGTATTCAAACTACAGTAAAATAGGAGAAT---CAGGTGGAATAGTGGAACCAACTGCTTATAAATTTACTGTACACATAAAAATCATCTCTTCAAATCACCATGCCACCTCTTACT
s panTro5.chr6             29575235 371 + 175400573 aATGGGAGTCTCTTAGCAACTACTTTACTAATATTAATTTGCTTATATTTTGAAAAAGAGTATGGACCATATCACTAAGCTGTTATGAGTTACATAATTGGCATGTGAAGTTGGTTGGTGGAGAGGAGAGACTGTGCTTCTATGGAATACAACCTCAGACTGCACTCTGATCCTAATCTCTGTCATAGCCCTATC-AATCACGAGCCATCTCCAGAGACTCATTCTGGCCAGACATTTAAAATACATTTTT-CAATGGAAGTATTCAAACTACAGTAAAATAGGAGAAT---CAGGTGGAATAGTGGAACCAACTGCTTATAAATTTACTGTACACATAAAAATCATCTCTTCAAATCACCATGCCACCCCTTACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29813470 371 + 173848474 aATGGGAGTCTCTTAGCAACTACTTTACTAATATTAATTTGCTTATATTTTGAAAAAGAGTATGGACCATATCACTAAGCTGTTATGAGTTACATAATTGGCATGTGAAGTTGGTTGGTGGAGAGGAGAGACTGTGCTTCTATGGAATACAACCTCAGACTGCACTCTGATCCTAATCTCTGTCATAGCTCTATC-AATCACGAGCCATCTCCAGAGACTCATTCTGGCCAGACATTTAAAATACATTTTT-CAATGGAAGTATTCAAACTACAGTAAAATAGGAGAAT---CAGGTGGAATAGTGGAACCAACTGCTTATAAATTTACTGTACACATAAAAATCATCTCTTCAAATCACCATGCCACCCCTTACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5616310 371 +   6154872 aATGGGAGTCTCTTAGCAACTACTTTACTAATATTAATTTGCTTATATTTTGAAAAAGAGTATGGACCATGTCACTAAGCTGTTATGAGTTACATAATTGGCATGTGAAGTTGGTTGGTGGAGAGGAGAGACTGTGCTTCTGTGGAATACAACCTCAGACTGCACTCTGATCCTAATCTCTGTCATGGCCCTATC-AATCACGAGTCATCTCCAGAGACTCATTCTGGCCAGACATTTAAAGTACATTTTT-CAATGGAAGTATTCAAACTACAGTGAAATAGGAGAGT---GAGGTGGAATAGTGGAACCAACTGCTTATAAATTTACTGTACACATAAAAATCATCTCTTCAAATCACCATGCCACCCCTTACT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29844385 371 + 172585720 aATGGGAATCTCTTAGCAATTACTTTACTAATATTAATTTGCTTATATTTTGAAAAATA-TATGTACCATGTCACTAAGCTGTTATGAGTTACATAATTGGTGTGTGAAGTTAGTTGGTGCAGAGGAGAGACTGTGCTTCTGTGGAATACAACCTCAGACTGCACTCTGATCCTAATCTCTGTCATGGCCCTATC-AATCATGAGCCATCTCTAGAGACTCATTCTGGCCAGACATTTAAAGGACATTTTTTCAGTGGAAGTATGCAAACTACAGTAAAATAGGAGAAT---GAGGTGAAATAGTGGAACCAACTGCTTATAAATTTACTGTACACATAAAAATCATCTGTTCAAATCACCATGTCACCCCTTACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29507364 371 - 170955103 aATGGGAATCTCTTAGCAATTACTTTACTAATATTAATTTGCTTATATTTTGAAAAAGA-TATGTACCATGTCACTAAGCTGTTATGAGTTACATAATTGGTGTGTGAAGTTAGTTGGTGCAGAGGAGAGACTGTGCTTCTGTGGAATACAACCTCAGACTGCACTCTGATCCTAATCTCTGTCATGGCCCTATC-AATCATGAGCCATCTCTAGAGACTCATTCTGGCCAGACATTTAAAGGACATTTTTTCAGTGGAAGTATGCAAACTACAGTAAAATAGGAGAAT---GAGGTGAAATAGTGGAACCAACTGCTTATAAATTTACTGTACACATAAAAATCATCTGTTCAAATCACCATGTCACCCCTTACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2493868 371 -   2996164 aATGGGAATCTCTTAGCAATTACTTTACTAATATTAATTTGCTTATATTTTGAAAAAGA-TATGTACCATGTCACTAAGCTGTTATGAGTTACATAATTGGTGTGTGAAGTTAGTTGGTGCAGAGGAGAGACTGTGCTTCTGTGGAATACAACCTCAGACTGCACTCTGATCCTAATCTCTGTCATGGCCCTATC-AATCATGAGCCATCTCTAGAGACTCATTCTGGCCAGACATTTAAAGGACATTTTTTCAGTGGAAGTATGCAAACTACAGTAAAATAGGAGAAT---GAGGTGAAATAGTGGAACCAACTGCTTATAAATTTACTGTACACATAAAAATTATCTGTTCAAATCACCATGTCACCCCTTACT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28750351 371 -  71996105 aatgggaatctcttagcaattactttactaatattaatttgcttatattttgaaaagga-tacataccATGTCACTAAGCTGTTATGAGTTACATAATTGGTGTGTGAAGTGAGTTGGTGCAGAGGAGAGACTGTGCTTCTATGAAATACAACCTCAGACTGCACTCTGATCCTAATCTCTGTCATGGCCCTATC-AACCATGAGCCATCTCTAGAGACTCATTCTGGCCAGACATTTAAAGGACATTTTTTCAGTGGAAGTATTCAAACTACAGTAAAATAGGAGAAT---GAGGTGAAATAGTGGAACCAACTGCTTATAAATTTACTGTACACATAAAAATCATCTGTTCAAATCACCATGTCACCCCTTACT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2393985 371 -   3067355 aatggaaATCTCTTAGCAATTACTTTACTAATATTAATTTGCTTATATTTTGAAAAAGA-TATGTACTATGTCACGAAGCTGTTATGAGTTACATAATTGGTGTGTGAAGTTAGTTGGGGCAGAGGACAGACTGTGCTTCTATGGAATACAACCTCAGACTGCACTCTGATCCTAATCGCTGTCATGGCCCTATC-AATCATGAGCCATCTCTAGAGGCTCATTCTGGCCAGACATTTAAACGACATTTTTCCAGTGGAAGTATTCAAACTACAGTAAAATAGGAGAAT---GAGGTGAAATAGTGGAACCAACTGCTTATAAATTTACAGTACACATAAAAATCATCTGTTCAAATCACCATGTCACCCCTTACT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1988652 367 -   2232465 AATGCAAAGTTCCTAGCGACTGCTTTGCTAATTATTAATTGCTTATATTTTGTACAAAAATATGTACTGTATTGCTAAGCTGTTATCAGTTACCTAAGAAGTGTGTGAGGTTGGGTGGTGGATAAGAGAGACTATCCTACTG----ACACAACCTCAGACTGCAGTCTGGTCCTAGTCTCTGTCACAGTTCTATCTAATCGCGAGTCATCCCCAGGGACTCATTCAGGCCAGACAGTTAGAGGACATTTTT-CTGTGAAGGGATTCAAATTACAGTAATGTAGGAGAATGCAGAGGAGGAACAGTGGAACCAACTGC--ATATACTTACTGT--ACATAAAAATCACCAGTTCAAATTGCCATTcctttttatgct
i otoGar3.GL873742         I 3707 I 778
e canFam3.chr35            26144709 15139 +  26524999 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=387319.000000
s hg38.chr6_GL000254v2_alt   603251 120 +   4827813 AAATGTGACTAAAGGTTTCCAGAAGctagggaaagttctttagcctttctgtggctttgtttcaccatatttaaaaagccccacacatgaagaattatgcagcccaaaatgtcaattgtt
s panTro5.chr6             29575606 120 + 175400573 AAATGTGACTAAAGGTTTCCAGAAGCTACGGAAAGTTCTTTAGGCTTTCTGTGGCTTTGTTTCACCATATTTAAAAagccccacacatgaagaattatgcagcccaaaatgtcaattgtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29813841 120 + 173848474 AAATGTGACTAAAGGTTTCCAGAAGCTACggaaagttctttagcctttctgtggctttgtttcaccatatttaaaaagccccacacatgaagaattatgcagcccaaaatgtcaattgtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5616681 120 +   6154872 AAATGTGACTAAAGGTTTCCAGAAGctagggaaagttctttagcctttctgtggctttgtttcaccatatttaaaaagccccacacatgaagaattatgcagcccaaaatgtcaattgtt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29844756 120 + 172585720 AAATGTGACTAAAGGTTTCCAGAAGCCAGGGAAAGTTCTTTAGTCTTTCTGTGGCTTTGTTTCATCATATTTTAAAagccccacacacgaagaattatgcagcccaaaatgccaattgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29507735 120 - 170955103 AAATGTGACTAAAGGTTTCCAGAAGCCAGGGAAAGTTCTTTAGTCTTTCTGTGGCTTTGTTTCATCATATTTTAAAagccccacacacgaagaattatgcagcccaaaatgccaattgtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2494239 120 -   2996164 AAATGTGACTAAAGGTTTCCAGAAGCCAGGGAAAGTTCTTTAGTCTTTCTGTGGCTTTGTTTCATCATATTTTAAAagccccacacacgaagaattatgcagcccaaaatgccaattgtt
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28750722 120 -  71996105 AAATGTGACTAAAGGTTTCCAGAAGCCAGGGAAAGTTCTTTAGTCTTTCTGTGGCTTTGTTTCATCATATTTAAAAAGCCCCACACATGAAGAAttatgcagcccaaaatgccaattgtt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2394356 120 -   3067355 AAATGTGACTAAAGGTTTCCAGAAGCCAgggaaagttctttagtctttctgtggctttgtttcatcatatttaaaaagccccacacatgaagaattatgcagcccaaaatgccaattgtt
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35            26144709 15139 +  26524999 I
e otoGar3.GL873742          1989019 778 -   2232465 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=193788.000000
s hg38.chr6_GL000254v2_alt   603371 51 +   4827813 cttctgttgagaaaccctgAACTAGGTGCACTGTGACTTAAGAAAACTACT
s panTro5.chr6             29575726 51 + 175400573 cttctgttgagaaaccctgAACTAGGTGCACTGTGACTTAAGAAAACTACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29813961 51 + 173848474 cttctgttgagaaaccctgAACTAGGTGCACTGTGACTTAAGAAAACTACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5616801 51 +   6154872 cttctgttgagaaaccctgAACTAGGTGCACTGTGACTTAAGAAAACTACT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29844876 51 + 172585720 cttctgttgagaaaccctgAACTAGGTGCACTGTGACTTAAGAAAACTACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29507855 51 - 170955103 cttctgttgagaaaccctgAACTAGGTGCACTGTGACTTAAGAAAACTACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2494359 51 -   2996164 cttctgttgagaaaccctgAACTAGGTGCACTGTGACTTAAGAAAACTACT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28750842 51 -  71996105 cttctgttaagaaaccttgaactaggtgcactgtgacttaagaaaactact
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2394476 51 -   3067355 cttctgttgagaaactccgAACTAGGTGCACTGTGACTTAAGAAAACTACT
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35            26159848 51 +  26524999 CTTTTGTGGAGAAATCCTGACATGGATATCCTGTGGCTTAAAAAAGCCACT
i canFam3.chr35            I 15139 C 0
e otoGar3.GL873742          1989019 778 -   2232465 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=563782.000000
s hg38.chr6_GL000254v2_alt   603422 163 +   4827813 CCAACGCAAAGACAGATAAATGTGTTCATATAATTTTTAACTTCCAAGTTTAGGGATATTACAGCCAACATGGAAGTAAGGATAAGTTGTTGGTTAAAGAGAAGTTGTTGATCATTCATTCTATATTAGATGTAAAGAAATGAAAAATAAGGAGTGGGAAAAG
s panTro5.chr6             29575777 163 + 175400573 CCAACGCAAAGACAGATAAATTTGTTCATATAATTTTTATCTTCCAAGTTTAGGGATATTACAGCCAACATGGAAGTAAGGATAAGTTGTTGGTTAAAGAGAAGTTGTTGATCATTCATTCTATATTAGATGTAAAGAAATGAAAAATAAGGAGTGGGAAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29814012 163 + 173848474 CCAACGCAAAGACAGATAAATTTGTTCATATAATTTTTATCTTCCAAGTTTAGGGATATTACAGCCAACTTGGAAGTAAGGATAAGTTGTTGGTTAAAGAGAAGTTGTTGATCATTCATTCTATATTAGATGTAAAGAAATGAAAAATAAGGAGTGGGAAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5616852 163 +   6154872 CCAACGCAAAGACAGATAAATTTGTTCATACAATTTTTATCTTCCAAGTTTAGGGATATTACAGCCAACATGGAAGTAAGGATAAGTTGTTGGTTAAAGAGAAGTTCTTGATCATTCATTCTATATTAGATGTAAAGAAATGAAAAATAAGGAGTGGGAAAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29844927 161 + 172585720 CCAAGGCAAAG--AGATAAATTTGTTCATATAACTTTTATCCTCCAAGTTTAGGGATATTATAGCCAATATGGAAGTAAGAGTAAGTTGTTGGTTAAAGAAAAGTTGTTGATCGTTCGTTCAACATTAGATGTAAAGAAATGAAAAATGAGGAGTGGGAAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29507906 161 - 170955103 CCAAGGCAAAG--AGATAAATTTGTTCATATAACTTTTATCCTCCAAGTTTAGGGATATTATAGCCAATATGGAAGTAAGAGTAAGTTGTTGGTTAAAGAAAAGTTGTTGATCGTTCGTTCAACATTAGATGTAAAGAAATGAAAAATGAGGAGTGGGAAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2494410 161 -   2996164 CCAAGGCAAAG--AGATAAATTTGTTCATATAACTTTTATCCTCCAAGTTTAGGGATATTATAGCCAATATGGAAGTAAGAGTAAGTTGTTGGTTAAAGAAAAGTTGTTGATCGTTCGTTCAACATTAGATGTAAAGAAATGAAAAATGAGGAGTGGGAAAGG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28750893 161 -  71996105 ccaaggcaaag--ggataaatttgttcatataacttTTATACTCCAGGTTTAGGGATATTATAGCCAATATGGAAGTAAGAATAAGTTGTTGGTTAAAGAAAAGTTGTTGATCATTCGTTCAACATTAGATGTAAAGAAATGAAAAATGAGGAGTGGGAAAGG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2394527 161 -   3067355 CCAAGGCAAAG--AGATAAATTTGTTCATATAACTTTTATCCTCCAAGTTTAGGGATATTATAGCCAATATGGAAGTAAGAATAAGTTGTTGGTTAAAGAGAAGTTGTTGATCATTCATTCAACATTAGATGTAAAGAAATGAAAAATGAGGAGTGGAAAAGG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1989797 125 -   2232465 ccaatgcacaggaaagTGCATTTGTTGTTATAA-TTTTACTCTCCGCGTTTAAAGGTATCATAGCCAATATGAAAGT-------------------------------------TTCATTCAATATCATATGCAAAAAAATGAAAAAAAAGTAGTGAGAAAGG
i otoGar3.GL873742         I 778 I 237
s canFam3.chr35            26159899 151 +  26524999 ACAAGAGGAAG-CTGGCCAATATGTTGGCACAG-TTTTATCCTCCAAG--TAAAGATATGACAGCCAA---AAATGTAAGTAAAAGTTGTATGTTGACAAGACAGTGTTGATCACTC-----ACATCTGATGTAATGAAGTAGAAGAGTATTAATAGGAAGAG
i canFam3.chr35            C 0 C 0
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=394172.000000
s hg38.chr6_GL000254v2_alt   603585 111 +   4827813 CTAcccattcactctgcctattgaaatcaggct---tcca---------cctgtatctctgtaccagaacttttctggtcaggggcaataataacttccttgCATTTAGCAACAGTTTCATGA
s panTro5.chr6             29575940 111 + 175400573 CTAcccattcactctgcctattgaaatcaggct---tcca---------cctgtacctctgtaccagaacttttctggtcaggggcaataataacttccttgCATTTAGCAACAGTTTCATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29814175 111 + 173848474 CTAcccattcactctgcctattgaaatcaggct---tcca---------cctgtacctctgtaccagaacttttctggtcaggggcaataataacttccttgCATTTAGCAACAGTTTCATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5617015 111 +   6154872 CTAcccattcactctgcctattgaaatcaggct---tcca---------cccttatctctttactagaacttttctggtcaggggcaataataacttccttgCATTTAGCAACAGTTTCATGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29845088 109 + 172585720 CTACCCACTCACTCTGACTACTGAAATCAGCCT---CCCA---------CCTGTATCTCTTTAC-AGAACTTTTCTGGTC-GGGGCAATAATAAATTCCTTGCACATAGCAACAGTTTCATGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29508067 110 - 170955103 CTACCCACTCACTCTGACTACTGAAATCAGCCT---CCCA---------CCTGTATCTCTTTAC-AGAACTTTTCTGGTCAGGGGCAATAATAAATTCCTTGCACATAGCAACAGTTTCATGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2494571 110 -   2996164 CTAcccactcactctgactactgaaatcaggct---ccca---------cctgtatctctttac-agaacttttctggtcaggggcaataataaattccttgCACATAGCAACAGTTTCATGG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28751054 110 -  71996105 CTACCCACTCACTCTGACTACCGAAATCAGGCT---CCCA---------CCTGTATCTCTTTAC-AGAACTTTTCTGATCAGGGGCAATAATAAATTCCTTGCACATAGCAACAGTTTCATGG
i chlSab2.chr17            C 0 I 314
s colAng1.NW_012115566v1    2394688 110 -   3067355 CTAcccattcactctgactactgaaatcaggct---ccca---------cctgtatctctttac-agaacttttctggtcaggggcaataataaattccttgCACATAGCAACAGTTTCATGG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1990159 111 -   2232465 CTGCCCATTCGTGGTGcctactgcaatcaggct---ttca---------catatttcatttcaccaaaacttttctgatcaggagcaataataattttcttgCATTTAACAACCATATCATGA
i otoGar3.GL873742         I 237 C 0
s canFam3.chr35            26160050 106 +  26524999 -----CATTTA-----------ACAATCAGGCTGTGtccattcttgctgcctccaccatcctacagaaactttcctgttcaaggccggtaatcatttctctgcattttgcaa-agtattgtgg
i canFam3.chr35            C 0 C 0
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=753339.000000
s hg38.chr6_GL000254v2_alt   603696 193 +   4827813 GTGGACCTAATTT-TTAACAATACTTTAAATATTTGAACTTGATTATAGACTGAAGTAAGA-------TAGAAGAGTGGTTGGAAATACAGAGAATGGCATTAGATGAACTTATCTAATGCTTTATGTTTCTTCTGTGGAACAGAAGGTGAGACTGTCTGCCAAGCATGAAGGGAGTGTGGGTAAATTAATGAAGGAAAGA
s panTro5.chr6             29576051 193 + 175400573 GTGGACCTAATTT-TTAACAATACTTTAAATATTTGAACTTGATTATAGACTGAAGTAAGA-------TAGAAGAGTGGTTGGAAATACAGAGAATGGCATTAGATGAACTTATCTAATGCTTTATGTTTCTTCTGTGGAACAGAAGGTGAGACTGTCTGCCAAGCATGAAGGGAGTGTGGGTAAATTAATGAAGGAAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29814286 193 + 173848474 GTGGACCTAATTT-TTAACAATACTTTAAATATTTGAACTTGATTATAGACTGAAGTAAGA-------TAGAAGAGTGGTTGGAAATACAGAGAATGGCATTAGATGAACTTATCTAATGCTTTATGTTTCTTCTGTGGAACAGAAGGTGAGACTGTCTGCCAAGCATGAAGGGAGTGTGGGTAAATTAATGAAGGAAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5617126 193 +   6154872 GTGGACCTAATTT-TTAACAATACTTTAAGTATTTGAACTTGATTATAGACTGAAGTAAGA-------CAGAAGAGTGGTTGGAAATACAGAGAATGGCATTAGATGAACTTATCTAATGCTTTATGTTTCTTCTGTGGAACAGAAGGTGAGACTGTCTGCCAAGCATGAAGGGAGTGTGGGTAAATTAATGAAGGAAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29845197 193 + 172585720 GTGGACCTAATTT-TTAACAACACTTTAAATATTTGAACTTGATTATAGACTGAAGTAAGA-------TAGAAGAGTGGTTGGAAATACAGAGAATGGCATTAGATGAACTTATCTAATGGTTTATGTTTCTTCTGTGGGACAGAAGGTGAGACTGTCTGCCAAGCATGAAGGGAGTGTGGGTAAAGTAATGAAGGAAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29508177 193 - 170955103 GTGGACCTAATTT-TTAACAACACTTTAAATATTTGAACTTGATTATAGACTGAAGTAAGA-------TAGAAGAGTGGTTGGAAATACAGAGAATGGCATTAGATGAACTTATCTAATGGTTTATGTTTCTTCTGTGGGACAGAAGGTGAGACTGTCTGACAAGCATGAAGGGAGTGTGGGTAAAGTAATGAAGGAAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2494681 193 -   2996164 GTGGACCTAATTT-TTAACAACACTTTAAATATTTGAACTTGATTATAGACTGAAGTAAGA-------TAGAAGAGTGGTTGGAAATACAGAGAATGGCATTAGATGAACTTATCTAATGGTTTATGTTTCTTCTGTGGGACAGAAGGTGAGACTGTCTGACAAGCATGAAGGGAGTGTGGGTAAAGTAATGAAGGAAAGG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28751478 193 -  71996105 gtggacctaattt-ttaacaacactttaaatatttgaacttgattatagactgaagtaaga-------tagaagagtggttggaaatacagagaATGGCATTAGATGAACTTATCTAATGGTTTATGTTTCTTCTGTGGGACAGAAGGTGAGACTGTCTGCCAAGCATGAAGGGAGTGTGGGTAAAGTAATGAAGGAAAGG
i chlSab2.chr17            I 314 C 0
s colAng1.NW_012115566v1    2394798 189 -   3067355 GTGGACCTAATTT-TTAACAACACTTTGAATATTTGAACTTGATTATAGACTGAAGTAAGA-------CAGAATAGTGGTTGGAAATAC----AATGGCATTAGATGAACTTATCTAATGGTTTGTGTTTCTTCTGTGGGACAGAAGGTGAGACTGTCTGCCAAGCGTGAAGGGAGTGTGGGTAAAGTAATGAAGGAAAGG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1990270 196 -   2232465 TTGGACGTGACTT-TTAACAATACTTTAAATGCTTGAACTTGATTATTTATTGAAGTAAGAGAATTAGTAGAAGGGTGATAGGAAATACAGAAAATGTCAGTAGATGAGTTTATCTAATGGCATATAG---TTCTATGGAATAG-AGGTGAAGCTATCTGTCAAGAATGAAGGGAGTGTGGATAAGGTAATGAGGGAAAGG
i otoGar3.GL873742         C 0 I 168
s canFam3.chr35            26160156 183 +  26524999 ttgaatctgatttctcaGTAATGATTGAAATACTTGTTCTTGATGACC--CTGAGGTAAAAGAGTTTTTGGAAGAGTGGTTGGAAGTA-GGAACATGGTGTGAACTGAG----TCTAATGGGGCATGTTCCCTCTGTGG--TGGTAGGTGAG---GTCACTCCTGAGAGAGAGCAGTATGGG------AATGAAGGGGCAA
i canFam3.chr35            C 0 C 0
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=3095800.000000
s hg38.chr6_GL000254v2_alt   603889 890 +   4827813 TGAATGTTTAAAACAGTTCCTGAAGGAAATAGGAGATGGCAGTAACCATAACAAATAAAGTAAGAGAAAAGTAAGATTGCTATTAATTTTAAACAACATCAGAGTGTGTGAGTGTGGAGTTTTCTCCAG--ATTTTCTGAACC---GTATGTATAGAAAATACTGGATGCTGTTTTGGAGTATTCCCTGGAGATGTGGCTAGAGGATAAATGTGTTATGAAGTTGGAAGTCCCAGAAATAAATTG--CAAATTTTTTTCCTCTGGCTTACTGTTCTAGCCCTTTACAGACATAGAGGTCTGGCTCTATAGGGACATAAGTACAGTTACAAGGAACTGAAAGACTTACGGAAAGTGGGCAGTTAAGAAACTGAAAGTATCTTTGAAGCCAAAGaaatgaaaaagatgtagagaaaaaagacacatatcatatgatt-------ttacttg---tattattacattagggaaaagaaaaaaactataaagatggaaacaaatttatggttaccagaagctggagtcagtgatgtgttgtttataaaaaggaatgggaggatttgggaggtgacagaattgttttatatcttgcctgtgtctatagttgc--------atgatta--------tatgtgtttgcaaaaagtcaagtaattatatgctaaaaaagag-aatgttaactgtctataaattatacatttataaaATAAATTGGAATGAGAGAAGTAATGGGAGAATGGCAAAGAGC------------A--------TACT---CCAATACCAAACAAAAGACTATGAAGG----TGGGATATAGTCTTAGAGTAGACATGTAGGTAATCTTCATGATGTGATCATAA-----------CATCTGC---------------------------ACTACCTTTGTAAC----TTTCATATTAACTGTTGCACTTACTACATTGTATTCTAATTATCT----GGTGTATGTGTTTCTCTCTTTAT
s panTro5.chr6             29576244 889 + 175400573 TGAATGTTTAAAACAGTTCCTGAAGGAAATAGGAGATGGCAGTAACCATAACAAATAAAGTAAGAGAAAAGTAAGATTGCTATTAATTTTAAACAACATCAGAGTGTGTGAGTGTGGAGTTTTCTCCAG--ATTTTCTGAACC---GTATGTATAGAAAATACTGGATGCTGTTTTGGAGTATTCCCTGGAGATGTGGCTAGAGGATAAATGTGTTATGAAGTTGGAAGTCCCAGAAATAAATTG--CAAATTTTTTTCCTCTGGCTTACTGTTCTAGCCCTTTACAGACATAGAGGTCTGGCTCTATAGGGACATAAGTACAGTTACAAGGAACTGAAAGACTTACGGAAAGTGGGCAGTTAAGAAACTGAAAGTATCTTTGAAGCCAAAGaaatgaaaaagacgtagagaaaaaagacacatatcatatgatt-------ttacttg---tattattacattagggaaaagaaaaaaactataaagatggaaacaaatttatggttaccagaagctggagtcagtgatgtgttgtttataaaaaggaatgggaggatttgggaggtgatagaattgttttatatcttgcctgtgtctatagttgc--------atgatta--------tatgtgtttgcaaaaaatcaagtaattatatgctaaaaaagag-aatgtt-actgtctataaattatacatttataaaATAAATTGGAATGAGAGAAGTAATGGGAGAATGGCAAAGAGC------------A--------TACT---CCAATACCAAACAAAAGACTATGAAGG----TGGGATATAGTCTTAGAGTAGACATGTAGGTAATCTTCATGATGTGATCATAA-----------CATCTGC---------------------------ACTGCTTTTGTAAC----TTTCATATTAACTGTTGCACTTACTACATTGTATTCTAATTATCT----GGTGTATGTGTTTCTCTCTTTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29814479 888 + 173848474 TGAATGTTTAAAACAGTTCCTGAAGGAAATAGGAGATGGCAGTAACCATAACAAATAAAGTAAGAGAAAAGTAAGATTGCTATTAATTTTAAACAACATCAGAGTGTGTGAGTGTGGAGTTTTCTCCAG--ATTTTCTGAACC---GTATGTATAGAAAATACTGGATGCTGTTTTGGAGTATTCCCTGGAGATGTGGCTAGAGGATAAATGTGTTATGAAGTTGGAAGTCCCAGAAATAAATTG--CAAATTTTTTTCCTCTGGCTTACTGTTCTAGCCCTTTACAGACATAGAGGTCTGGCTCTATAGGGACATAAGTACAGTTACAAGGAACTGAAAGACTTACGGAAAGTGGGCAGTTAAGAAACTGAAAGTATCTTTGAAGCCAAAGaaatgaaaaagacgtagagaaaaaagacacatatcatatgatt-------ttacttg---tattattacattagggaaaag-aaaaaactataaagatggaaacaaatttatggttaccagaagctggagtcagtgatgtgttgtttataaaaaggaatgggaggatttgagaggtgatagaattgttttatatcttgcctgtgtctatagttgc--------atgatta--------tatgtgtttgcaaaaaatcaagtaattatatgctaaaaaagag-aatgtt-actgtctataaattatacatttataaaATAAATTGGAATGAGAGAAGTAATGGGAGAATGGCAAAGAGC------------A--------TACT---CCAATACCAAACAAAAGACTATGAAGG----TGGGATATAGTCTTAGAGTAGACATGTAGGTAATCTTCATGATGTGATCATAA-----------CATCTGC---------------------------ACTGCTTTTGTAAC----TTTCATATTAACTGTTGCACTTACTACATTGTATTCTAATTATCT----GGTGTATGTGTTTCTCTCTTTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5617319 885 +   6154872 TGAATGTTTAAAACAGTTCCTGAAGGAAATAGGAGATGGCAGTAACCATAACAAATAAAGTAAGAGAAAAGTAAGATTGCTATTAATTTTAAACAACATCAGAGTGTGTGAGTGTGGAGTTTTCTCCAG--ATTTTCTGAACC---GTATGTATAGAAAAGACTGGATGCTGTTTTGGAGTATTCCCTGGAGATGTGGCTAGAGGATAAATATGTTATGAAGTTGGAAGCCCCAGAAATAAATTG--CAAATTTTTTTCCTCTGGCTTACTGTTCTAGCCCTTTACAGACATAGAGTTCTGGCTCTATAGGGACATAAGTACAGTTACAAGGAACTGAAAGACTTATGGAAAGTGGGCAGTTAAGAAACTGAAAGTATCTTTGAAGCCAAAGAAATGAAaaagaagtagagaaaaaagacacatatcatatgatt-------ctacttg---tattattacattagggaaaagaaaaaaactataaaaatggaaacaaatttatggttaccagaagctggagtcagtgatgtgttgtttataaaaaggaatgggaggatttgggaggtgatagaattgttttatatcttgcctgtgtctatagttgc--------atgacta--------tatgtgtttgcaaaaaatcaagtaattatatgctaaaaaagag-aatgtt-actgtctataaattatacatttataaaATAAATTGGAAT----TAAGTAATGGGAGAATGGCAAAGAGC------------A--------TACT---CCAATACCAAACAAAAGACTATGACTG----TGGGATATAGTCTTAGAGTAGACATGTAGGTAATCTTCGTGATGTGATCATAA-----------CATCTGC---------------------------ACTACTTTTGTAAC----TTTAATATTAACTGTTGCACTTACTACATTGTATTCTAATTATCT----GGTATATGTGTTTCTCTCTTTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29845390 892 + 172585720 TGAATGTTTAAAACAGTTCCTGAAGGAAATGGGAGATAGCAGTAACCACAACAAATAAAATAAGAGAAAAGTAAGAGTGCTATTAATTTTAAACAACACCAGAGTGTGTGAGTGTGGAATATTCTCCAC--ATTTTCTGAACC---ATATGTGTAGAAGAGACTGGCTGCTGGTTTGGATTATTCACTGGAGATGTGGGTAGAGGATAAATGTGTTATGAAGTTGGAAATCCTAGAAATAAAATG--CAAATTTTTCTCCTCTGGCTTACTGTTCTAGCCCTTCACAGACATAGAGTTCTGGCTCTATAGAGACATAAGTACAGTTACAAGGAACTGAAAGACTTAGGGAAAGTGGAGAGTTAAGAAACTGAAAATATCTTTGAAGCCAAAGAAACAAAaaagaagtagagaaaaaagatacatgtcatatgatt-------ctacttg---tattattacattagggaagat-aaaaaactgtagagatagaaacaaatttatggtttccagaagctggaatcagtgatgtgttgtttataaaaaggaaggggaagatttgggaggtgatagaattgttttatatcttgcctgtgtctatagttgc--------atgacta--------tatgtgtttgtaaaaaatcaaataattatatgctaaaagagag-aatgtt-actgtctataaattatacatttataaaATAAATTGGAATGAGAGAAGTAATGGAAGAATGGCAAAGAAC------------A--------CACT---CCAATACCAAACAAAAGACTATGAAGG----TGGGATACAGTCTTAGAGTAGACATGTAGGTAATCTTCATGATGTGATCATAA-----------CATCTGC---------------------------ACTACTTTTGTAACTCCTTTTCATATTAACTGTTGCACTTACTACATCGTATTCTAATTATCT----GCTATATGCATTTCTCTCTTTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29508370 890 - 170955103 TGAATGTTTAAAACAGTTCCTGAAGGAAATGGGAGATAGCAGTA--CACAACAAATAAAATAAGAGAAAAGTAAGAGTGCTATTAATTTTAAACAACACCAGAGTGTGTGAGTGTGGAATTTTCTCCAC--ATTTTCTGAACC---ATATGTGTAGAAGAGACTGGCTGCTGGTTTGGATTATTCACTGGAGATGTGGGTAGAGGATAAATGTGTTATGAAGTTGGAAATCCTAGAAATAAAATG--CAAATTTTTCTCCTCTGGCTTACTGTTCTAGCCCTTCACAGACATAGAGTTCTGGCTCTATAGGGACATAAGTACAGTTACAAGGAACTGAAAGACTTAGGGAAAGTGGGGAGTTAAGAAACTGAAAATATCTTTGAAGCCAAAGAAACAAAaaagaagtagagaaaaaagatacatgtcatatgatt-------ctacttg---tattattacattagggaagat-aaaaaactgtagagatagaaacaaatttatggtttccagaagctggaatcagtgatgtgttgtttataaaaaggaatgggaagatttgggaggtgatagaattgttttatatcttgcctgtgtctatagttgc--------atgacta--------tatgtgtttgtaaaaaatcaaataattatatgctaaaagagag-aatgtt-actgtctataaattatacatttataaaATAAATTGGAATGAGAGAAGTAATGGAAGAATGGCAAAGAAC------------A--------CACT---CCAATACCAAACAAAAGACTATGAAGG----TGGGATACAGTCTTAGAGTAGACATGTAGGTAATCTTCATGATGTGATCATAA-----------CATCTGC---------------------------ACTACTTTTGTAACTCCTTTTCATATTAACTGTTGCACTTACTACATCGTATTCTAATTATCT----GCTATATGCATTTCTCTCTTTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2494874 886 -   2996164 TGAATGTTTAAAACAGTTCCTGAAGGAAATGGGAGATAGCAGTA--CACAACAAATAAAATAAGAGAAAAGTAAGAGTGCTATTAATTTTAAACAACACCAGAGTGTGTGAGTGTGGAATTTTCTCCAC--ATTTTCTGAACC---ATATGTGTAGAAGAGACTGGCTGCTGGTTTGGATTATTCACTGGAGATGTGGGTAGAGGATAAATGTGTTATGAAGTTGGAAATCCTAGAAATAAAATG--CAAATTTTTCTCCTCTGGCTTACTGTTCTAGCCCTTCACAGACATAGAGTTCTGGCTCTATAGGGACATAAGTACAGTTACAAGGAACTGAAAGACTTAGGGAAAGTGGAGAGTTAAGAAACTGAAAATATCTTTGAAGCCAAAGAAACAAAaaagaagtagagaaaaaagatacatgtcatatgatt-------ctacttg---tattattacattagggaagat-aaaaaactgtagagatagaaacaaatttatggtttccagaagctggaatcagtgatgtgttgtttataaaaaggaatgggaagatttgggaggtgatagaattgttttatatcttgcctgtgtctatagttgc--------atgacta--------tatgtgtttgtaaaaaatcaaataattatatgctaaaagaga-----gtt-actgtctataaattatacatttataaaATAAATTGGAATGAGAGAAGTAATGGAAGAATGGCAAAGAAC------------A--------CACT---CCAATACCAAACAAAAGACTATGAAGG----TGGGATACAGTCTTAGAGTAGACATGTAGGTAATCTTCATGATGTGATCATAA-----------CTTCTGC---------------------------ACTATTTTTGTAACTCCTTTTCATATTAACTGTTGCACTTACTACATCGTATTCTAATTATCT----GCTATATGCATTTCTCTCTTTAT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28751671 899 -  71996105 TGAATGTTTAAAACAGTTCCTGAAGGAAATGGGAGATAGCAGTAACCACAACAAATAAAATAAGAGAAAAGTAAGAGTGCTATTAATTTTAAACAACACCAGAGTGTGTGAGTGTGGAATTTTCTCCAC--ATTTTCTGAACC---GTATGTGTAGAAGAGACTGGCTGCTGGTTTGGAGTATTCACTGGAGATGTGGGTAGACGACAAATGTGTTATGAAGTTGGAAATCCTAGAAATAAAATG--CAAATTTTTCTCCTCTGGCTTACTGTTCTAGCCCTTCACAGACATAGAGTTTTGGCTCTATAGGGACATAAGTACAGTTACAAGGAACTGAAAGACTTAGGGAAAGTGGAGAGTTAAGAAACTGAAAGTATCTTTGAAGCCAAAGAAACAAAAAAGTAGTAGAGAAAAAAGATACATGTCATACGATT-------CTACTTGTATTATTATTACATTAGGGAAGAt-taaaaactgtaaagatagaaacaaatttatgtttgccagaagctggaatcagtgatgtgttgtttataaaaaggagtgggaagatttgggaggtgatagaattgttttatatcttgcctgtgtctatagttgc--------atgacta--------tatgtgtttgtaaaaaatcaaataattatttgccagaagagag-aatgtt-actgtctataaattatacatttataaaataaattggaatgagagaagtaatgggagaatgacaaagagc------------a--------tatt---ccaataccaaacaaaagacTAGGAAGGTGGATGGACTACAGTCTTAGAGTAGACATGTAGGTAATCTTCATGATGTGATCATAA-----------CATCGGC---------------------------ACTACTTTTGTAACTCCTTTTCATATTAACTGTTGCACTTACTACATCGTATTCTAATTATCT----GCTATATGGGTTTCTCTCTTTAT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2394987 899 -   3067355 TGACTGTTTAAGACAGTTTCTGTAGGAAATGGGAGATAGTAGTAACCACAAC-AATAAAATAAGAGAAAAGTAAGAGTGCTATTAATTTTAAACAACACCAGAGTGTGTGAGTGTGGAATTTTCTCCAC--ATTTTCTGAACC---ATATGTGTAGAAGAGACTGGCTGCTGGTTTGGAGTGTTCACTGGAGATGTGGGTAGAGGATAAATGTGTTATGAAGTTGGAAATCCTAGAAATAAGATG--CAAATTTTTCTCCTCTGGCTTACTGTTCTAGCCCTTTACAGACATAGAGTTCTGGCTCTATAGGGGCATAAGTACAGTTACAAGGAACTGAAAGACTTAGGGAAAGTGGAGAGTTAAGAAACTGAAAGTATCTTTGAAGCCAAAGAAACAAAaaagaagtagagaaaaaagatacatgtcatatgatt-------ctacttg---tattattacattaggggagat-aaaaatctgtaaagatagaaacaaatttgtggttgccagaagctggaatcagtgatgtgttgtttataaaaaggaatgggaagatttgggaggtgacacaattgttttatatcttgcctgtgtctatagttgc--------atgactatacatgactatatgtttgtaaaaaatcaaataattatatgctaaaaaagag-aatgtt-actgtctataaattatacatttataaaATAAATAGGAATGAAAGAAGTAATGGGAGAATGGCAAAGAGC------------A--------TACT---CCAATACCAAACAAAAGACTATGAAGG----TGGGATACAGTCTTACAGTAGACACGTAGATAATCTTCATGATGTGATCATAA-----------CATCTGC---------------------------ACTACTTTTGTAACTCCTTTTCATATTAACTGTTGCACTTACTACATCGTATTCTAATTATCT----GCTATATGCGTTTCTCTCTTTAC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1990634 864 -   2232465 tGAATATTTGAAACAATTCCTAAAGAAATTAAGAGATAGTGGTAACCAAGGAAAATAAAACAACTGAAAATTAAGAGTTTTATTGATTTACAAAGTCACTAGGGTGCATTATTTTGGACTTTTCTCCAGGTATTTCCAGAA-----------GCAGAAGAGACTGGCTGCTGCTTCGAGGTATTTGATGGAGATGTGGCAGGATGGTGAGTATGCTAGGGAGCTGAAAGTCCCACAAACAAAAAAGCAAAATTTTTCTTTTCTAACTTTCTTTTCTGGTCATTTATGACCATAGGGTTCTGGCTTTAGCGGGACAAAAGTGTGATCAGAAGGAACTGAAAGGCTCAAAGAAAGTGGAGGGGTaagaaactgaaggcatctttgaagctaaggagataaaaaacaatcagtaagaaagactacatattgtattgtt-------ctgctta---tgtgattacatctggaaaagg--agaaactataaa-acagaaacagataaatggttacaaatggctgggttcagaaaag-gcaggttagaaacaggtgtgggaagatt-----gtgggtggaattgttctacatcttgactgtaactatagttacaatatgttatgagtt--------tatatgtttgtcaataattgcagaattatatactaaaag-gag-aatttt-actatctataaataacacatt-----aataaaTTATAAAAACATAAGTAATGGGAGAATTAGAAAGAAATAATTATATGAGC--------TATT---CTACAATCAAATGTGGAAGCTAGAAAG----T-GAATATAGTCATGTGGTACAAGTATAGGTAATTTGAGAGATGTGATCAAAA-----------TTTCTT-----------------------------CTGTTTTTATGAC-------------AACTGAt--------------ttttttttttttttt----ggtttttttgtttttgttttCAT
i otoGar3.GL873742         I 168 I 978
s canFam3.chr35            26160339 887 +  26524999 TGAGT-CCTGTGATGATTCCTGAAGGGAGTAGG-GGCAGCAGGGACCACTG------------------AGCATGATTTTTATAATTTTATAAACACACCAGAGTGCATGCCTACAGAATTTTCTCCTG--ATTTTCTAGACTCCAATA-----AGAAGATACCTTGGGCTGCTTT-CAGTGTTGGTGGGAG-TACGACAGGAGG-TAAGCATGCTG-GGGGCTGGAAGTC--AGAGGAAAGGGC--CAACTTTGTCTCCTCCCACTGTCCTCTCTGATCCTATACCACCATGGG--TCCAGCTTCATGGGGGCAGCAATGTGGTCTGGGGAGGCCTGAATGCTCAGATAAAGTGGAGA-TTAAGCAACTGAGGGTAGCTTTGTAGCCAA-GAAATGAAAAAGAAGTCACAGGAAAGGTTAC-TGTGATTCCATTTTTACAGTTAATTA---TAGGATTACTTTCTCACaaag-gttgaactataaggaaaggaacagatctgtggttatga-aggctggctgcgggagagagctcactaggaaagtacatgggacaggtttggaggtgatggaaacattctatggcttggc--------------c--------atggctg-----------------gttacaGATCAATAAAACATATAGTGAGAGGGTGAAATAAT-ACTGTGTGTAAATTATACATTAATAA---AAATT----TTGGAGAAGCATTAGGAGAAAGGAAACAGGT------------AATTGTATGAACTTAGCCAAGATCAAGCACAGAGCCGTGAAGG----GAGGATATAGATGTGGA-TAGAAGTTCAGGTTTGGTACATGATGAACTCATAAAACCCTTTAATCATCTACTTTGGAAAGTCTCTCCAGAGCCCTTCTTTTGTTCTTGTGAC-ACTTTTCAGATGAACTGTTACACTTCCTACATTTTATTCTGATTACCTTCTAGATACATCTGTTCCTGTCCTTAT
i canFam3.chr35            C 0 C 0
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=1896849.000000
s hg38.chr6_GL000254v2_alt   604779 584 +   4827813 AAGGTGAATGATTTGAAGGTGGGGAATTGAGACTTGACCTGATACACAATTGAATTTTT-GATATCTGGATTATGCCACAATGTCTTGTATTAGGTTGATGATCAACAATAATTTTAAAAAGAAT-AAAAAAGGAGTGGAGGTCAAGGAGGTCTGAGGTTAGTGTGGGGAGGCAAGATAATCTACCT-AATATTGATTGTGGCAGCATGATGGTCAGTGGGAAGGTTGCATCATCAACATAGATGCCTGGGTGATGGCCATATTTGATACTGGAGAGAAGAAACTGGTATGGGCACCCAA-----TATGCAGTTAGGAACATGCCTGG-AAAATAAGCATATGAGCAAAATAAGAAGATGTAGAGAATTTTTGTGGTAAGAAAAT---GACCTCAAAGTGCAAGATA-TTTTATATGAAAGAGAAGAAGTAACAGTCAGAAAAAA------AATAAG----------------AAACTT-AGAGAATACAGACCTTGATCCTACCCACCTCCTCAAACTGTGAGAGAAGGAGCAGCTTTGAATTGAAGA---ATAAGAGAAATAGCTTTTGGGAGAAGAACCAAATGTCAATGACAACACAGAAATATCAG---GAGTAGGTAGTG
s panTro5.chr6             29577133 584 + 175400573 AAGGTGAATGATTTGAAGGTGGGGAATTGAGACTTGACCTGATACACAATTGAATTTTT-GATATCTGGATTATGCCACAATGTCTTGTATTAGGTTGATGATCAACAATAATTTTAAAAAGAAT-AAAAAAGGAGTGGAGGTCAAGGAGGTCTGAGGTTAGTGTGGGGAGGCAAGATAATCTACCT-AATATTGATTGTGGCAGCATGATGGTCAGTGGGAAGGTTGCATCATCAACATAGATGCCTGGGTGATGGCCATATTTGATACTGGAGAGAAGAAACTGGTATTGGCACCCAA-----TATGCAGTTAGGAACATGCCTGG-AAAATAAGCATATGAGCAAAATAAGAAGATGTAGACAATTTTTTTGGTAAGAAAAT---GACCTCAAAGTGCAAGATA-TTTTATATGAAAGAGAAGAAGTAACAGTCAGAAAAAA------AATAAG----------------AAACTT-AGAGAATACAGACCTTGATCCTACCCACCTCCTCAAACTGTGAGAGAAGGAGCAGCTTTGAATTGAAGA---ATAAGAGAAATAGCTTTTGGGAGAAGAACCAAATGTCAATGACAACACAGAAATATCAG---GAGTAGGTAGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29815367 584 + 173848474 AAGGTGAATGATTTGAAGGTGGGGAATTGAGACTTGACCTGATACACAATTGAATTTTT-GATATCTGGATTATGCCACAATGTCTTGTATTAGGTTGATGATCAACAATAATTTTAAAAAGAAT-AAAAAAGGAGTGGAGGTCAAGGAGGTCTGAGGTTAGTGTGGGGAGGCAAGATAATCTACCT-AATATTGATTGTGGCAGCATGATGGTCAGTGGGAAGGTTGCATCATCAACATAGATGCCTGGGTGATGGCCATATTTGATACTGGAGAGAAGAAACTGGTATGGGCACCCAA-----TATGCAGTTAGGAACATGCCTGG-AAAATAAGCATATGAGCAAAATAAGAAGATGTAGACAATTTTTTTGGTAAGAAAAT---GACCTCAAAGTGCAAGATA-TTTTATATGAAAGAGAAGAAGTAACAGTCAGAAAAAA------AATAAG----------------AAACTT-AGAGAATACAGACCTTGATCCTACCCACCTCCTCAAACTGTGAGAGAAGGAGCAGCTTTGAATTGAAGA---ATAAGAGAAATAGCTTTTGGGAGAAGAACCAAATGTCAATGACAACACAGAAATATCAG---GAGTAGGTAGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5618204 581 +   6154872 AAGGTGAATGATTTGAAGGTGGGGAATTGAGACTTGACCTGATACATAGCTGAATTTTT-GATATCTGGATTATGCCACAATGTCTTGTATTAGGTTGATGATCAACAATAATTTTAAAAAGAAT-AAAAAAGGAGTGGAGGTCAAGGAGGTCTGAGGTTAGTGTGGGGAGGCAAGATAATCTACCT-AATATTGATTGTGGCAGCATGATGGTCAGTGGGAAGGTTGCATCATCAACATAGATGCCTGGGTGATAGCCATATTTGATACTGGAGAGAAGAAACTGGTATGGGAACCCAA-----TATGCAGTTAGGAACATGCCTGG-AAAATAAGCATATGAGCAAAAT---AAGATGTAGAGAATTTTTTTGGTAAGAAAAT---GGCCTCAAAGTGCAAGATA-TTTTATATGAAAGAGAAGAAGTAACAGTCAGAAAAAA------AATAAG----------------GAACTT-AGAGAATACAGACCTTGATCCTACCCACCTCCTCAAACTGTGAGAGAAGGAGCCACTTTCAATTGAAGA---ATAAGAGAAATAGCTTTTGGGAGAAGAACCAAATGTCAATGACAACACAGAAATATCAG---GAGTAGGTAGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29846282 586 + 172585720 ATGGTGAATGATTTAAAGGTGGAGAATTGAGACTTGACTTTATACACAATTGAATTTTT-GATATCTGGATTATACCACTATGTCTTGTACTAAGTTGATGATCAACAATAATTTTAAAAAGAAT-AAAAAAGGAGTGGAGGTCAAGGAGTTCTGAGGTTAACATGGGGAGGGAAGAT-ATCTACCT-GATATTAATTGTGGCAGCATGATGGTCAGTGGGAAGGTTGCATCATCAACATAGATGCCTGGGTGATGGCCATATTTGATACTAGAAAGAAAAAACTGGTATAGGCACCCAA-----TATGCAGTTAGGAACATGCCTGG-AAAATAAGCATATGAGAAAAACAAGAAGATGTAAAGAATTTTT-TGGTAAGAAAATGTAGGCCTTGAAGGGCAAGATA-TTTTATATGAAAGAGAAGAAGTAACAGTCAGAAAAAAA-----AATAAG----------------GAACTT-AGAGAATGCAGACCTTGATCCTACCCACCTCCTCAAACTGCGAGAGAAGGAGCAGCTTTGAATTGAAGA---ATAAGAGAAATAGCTTTTGGGAGAAGAACCGAATGTTAACGACAACACAGAATTATCAC---GACTAGGTAGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29509260 586 - 170955103 ATGGTGAATGATTTAAAGGTGGAGAATTGAGACTTGACTTTATACACAATTGAATTTTT-GATATCTGGATTATACCACTATGTCTTGTACTAAGTTGATGATCAACAATAATTTTAAAAAGAAT-AAAAAAGGAGTGGAGGTCAAGGAGGTCTGAGGTTAACATGGGGAGGGAAGAT-ATCTACCT-GATATTAATTGTGGCAGCATGATGGTCAGTGGGAAGGTTGCATCATCAACATAGATGCCTGGGTGATGGCCATATTTGATACTAGAAAGAAAAAACTGGTATAGGCACCCAA-----TATGCAGTTAGGAACATGCCTGG-AAAATAAGCATATGAGAAAAACAAGAAGATGTAAAGAATTTTT-TGGTAAGAAAATGTAGGCCTTGAAGGGCAAGATA-TTTTATATGAAAGAGAAGAAGTAACAGTCAGAAAAAAA-----AATAAG----------------GAACTT-AGAGAATGCAGACCTTGATCCTACCCACCTCCTCAAACTGTGAGAGAAGGAGCAGCTTTGAATTGAAGA---ATAAGAGAAATAGCTTTTGGGAGAAGAACCGAATGTTAACGACAACACAGAATTATCAC---GACTAGGTAGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2495760 586 -   2996164 ATGGTGAATGATTTAAAGGTGGAGAATTGAGACTTGACTTTATACACAATTGAATTTTT-GATATCTGGATTATACCACTATGTCTTGTACTAAGTTGATGATCAACAATAATTTTAAAAAGAAT-AAAAAAGGAGTGGAGGTCAAGGAGGTCTGAGGTTAACATGGGGAGGGAAGAT-ATCTACCT-GATATTAATTGTGGCAGCATGATGGTCAGTGGGAAGGTTGCATCATCAACATAGATGCCTGGGTGATGGCCATATTTGATACTAGAAAGAAAAAACTGGTATAGGCACCCAA-----TATGCAGTTAGGAACATGCCTGG-AAAATAAGCATATGAGAAAAACAAGAAGATGTAAAGAATTTTT-TGGTAAGAAAATGTAGGTCTTGAAGGGCAAGATA-TTTTATATGAAAGAGAAGAAGTAACAGTCAGAAAAAAA-----AATAAG----------------GAACTT-AGAGAATGCAGACCTTGATCCTACCCACCTCCTCAAACTGTGAGAGAAGGAGCAGCTTTGAATTGAAGA---ATAAGAGAAATAGCTTTTGGGAGAAGAACCGAATGTTAACGACAACACAGAATTATCAC---GACTAGGTAGTG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28752570 603 -  71996105 ATGGTGAATGATTTAAAGGTGGAGAATTGAGACTTGACCTTATACACAATGGAATTTTT-GATATCTGGATTATACCACCATGTCTTGTACTAGGTTGATGATCAACAATAATTTTAAAAAGAAT-AAAAAAGGAGTGGAGGTCAAGGAGTTCTGAGGTTAACATGGGGAGGCAAGAT-ATCTACCT-GATATTAATTGTGGCAGCATGATGGTCAGTGGGAAGGTTGCATCATCAACATAGATGCATGGGTGATGGCCATATTTGATACTGGAAAGAAAAAACTGGTATAGGCACCCAA-----TATGCAGTTAGGAACATGCCTGGAAAAATAAGCATGTGAGGAAAACAAGAAGATGTAAAGAATTTTT-TGGTAAGAAAATGTAGGCCTCGAAGGGCAAGGTA-TTTTATATGAAAGAGAAGAAGTAACAGTCAGAAAAAAA-----AATAAGGAACTTAGAGAATGCAGAACTT-AGAGAATGCAGACCTTGATCCTACCCACCTCCTCAAACTGTGAGAGAAGGAGCAGCTTTGAATTGAAGA---ATAAGAGAAATAGCTTTTGGGAGAAGAACAAAATGTTAACGACAACACAGAAATAGCAC---GACTAGGTAGTG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2395886 584 -   3067355 ATGGTGAATGATTTAAAGGTGGAGAATTGAGACTTGACCTTATACACAATGGAATTTTT-GATATCTGGATTATACCACCATGTCTT-------GTTGATGATCAACAATAATTTTAGAAAGAATAAAAAAAGGAGTGGAGGTCAAGGAGGTCTGAGGTTAATGTGGGGAGGCAAGAT-ATCTACCT-GATATTAATTGTGGCAGCATGATGGTCAGTGGGAAGGTTGCATCATCAATACAGATGCCTGGGTGATGGCCATATTTGATACTGGAAAGAAAAAACTGGTATAGGCACCCAA-----TACGCAGCTAGGAACATGCCTGG-AAAATAAGCATATGAGGAAAACAAGAAGATGTAAAGAATTTTT-TGGTAAGAAAATGTAGGCCTTGAAGGGCAAGATA-TTTTATATGAAAGAGAAGAAGTAACAGTCAGAAAAAAAAAAATAATAAG----------------GAACTTAAGAGAATGCAGACCTTGATCCTACCCACCTCCTCAAACTGTGAGAGAAGGAGCAGCTTTCAATTGAAGA---ATAAGAGAAATAGCTTTTGGGAGAAGAACCAAATGTTAACGACA--ACAGAAATATCAG---GACTAGGTAGCG
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35            26161226 531 +  26524999 ATGATGGATTATTAGAGGAT-GAGAGTGAAGACTTGACTT----CATAGTTGTGTTTCTGGATGTCCAGGAGGTACCACAATGCCTCACACTAAGTTGGTGATTGACAGCAATTCCAAGAGGAAT-AATACATTAAT-GAGGTCAAGAAGGTCTGAAGTTAATGT--GGAAGCTGGACCATCTACCTGGATATTGACTGGGCCAGTGTGACAGCCAGTGTGGATGCTCAATTATCTGCATGGACACCCTGGAAATGGCCAGAGTAGATGCTGG-GAGGAAGCATGGGTACAAGTGCTCAAGGCTCTGTGAGAGTAGTAGCATGCCTGG-AAAGTATGTAGGTGAGGAAAAC---AAGATGCA--------------------------AGCGTCAAAGTAAAAGAAATTTTTATGTGGTGGGGAACAAGTAGCGATCAGGAAAAA------AA--------------------GAATTT-AGAGAACAAATACTGTGA------------------------AATAAAGGAGCAACTCTGAACTGAAGAATGATAAGGGAAACAGTATGTGAGTGAAAAACTGACCATTGAGG----CACAGAAAAATCACCATGAAAAGGAAGTG
i canFam3.chr35            C 0 I 72
e otoGar3.GL873742          1991498 978 -   2232465 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=263003.000000
s hg38.chr6_GL000254v2_alt   605363 88 +   4827813 GTATTGGAGAGCTTTTTCATA--GTAGTGCTAGGGTTCTAAGGAATTTTATTAGTGAGCAAAGAATTCAAAAAGAAACATTCCAAAATGT
s panTro5.chr6             29577717 88 + 175400573 GTATTGGAGAGCTTTTTCATA--ATAGTGCTAGGGTTCTAAGGAATTTTATTAGTGAGCAAAGAATTCAAAAAGAAACATTCCAAAATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29815951 88 + 173848474 GTATTGGGGAGCTTTTTCATA--ATAGTGCTAGGGTTCTAAGGAATTTTATTAGTGAGCAAAGAATTCAAAAAGAAACATTCCAAAATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5618785 88 +   6154872 GTATCAGAGAGGTTTTTCATA--ATAGTGCTAGGGTTCTAAGGAATTTTATTAGTGAGCAAAGAATTCAAAAAGAAACATTCCAAAATGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29846868 90 + 172585720 GTATTGGAGAACTTTTTCATAATATATTGCTAAGGTTCTAAGGAATTTTATTAGTGAGTAAAGAATTCAAAAAGAGACATTCCAAAATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29509846 90 - 170955103 GTATTGGAGAACTTTTTCATAATATATTGCTAAGGTTCTAAGGAATTTTATTAGTGAGTAAAGAATTCAAAAAGAGACATTCCAAAATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2496346 90 -   2996164 GTATTGGAGAACTTTTTCATAATATATTGCTAAGGTTCTAAGGAATTTTATTAGTGAGTAAAGAATTCAAAAAGAGACATTCCAAAATGT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28753173 90 -  71996105 GTATTGGAGAACTTTTTCATAATATATTGCTAGGGTTCTAAGGAACTTTATTAGTGAGTAAAGAATTCAAAGAGAGACATTCCAAAATGT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2396470 90 -   3067355 GTATTGGAGAACTTTTTCATAATATATTGCTAGGGTTCTAAGGAATTTTATTAGTGAACAAAGAATTCAAAAAGAAACTTTCCCAAATGT
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35            26161757 72 +  26524999 I
e otoGar3.GL873742          1991498 978 -   2232465 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=584.000000
s hg38.chr6_GL000254v2_alt   605451 3 +   4827813 AAG
s gorGor5.CYUI01015250v1    5618873 3 +   6154872 AAA
i gorGor5.CYUI01015250v1   C 0 C 0
s colAng1.NW_012115566v1    2396560 3 -   3067355 AAG
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35            26161757 72 +  26524999 I
e otoGar3.GL873742          1991498 978 -   2232465 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e chlSab2.chr17            28753263 0 -  71996105 C
e cerAty1.NW_012002711v1     243383 1559 +    766320 I
e macNem1.NW_012011356v1    2496436 0 -   2996164 C
e macFas5.chr4             29509936 0 - 170955103 C
e rheMac8.chr4             29846958 0 + 172585720 C
e panPan2.chr6             29816039 0 + 173848474 C
e panTro5.chr6             29577805 0 + 175400573 C

a score=8217.000000
s hg38.chr6_GL000254v2_alt   605454 98 +   4827813 AATGACAGCATGggccgggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccat
s colAng1.NW_012115566v1    2396563 97 -   3067355 AATGATAGCAT-ggccgggcgcggtggctcaagcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagatcaagaccat
i colAng1.NW_012115566v1   C 0 M 775
e canFam3.chr35            26161757 72 +  26524999 I
e otoGar3.GL873742          1991498 978 -   2232465 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e chlSab2.chr17            28753263  0 -  71996105 C
e cerAty1.NW_012002711v1     243383 1559 +    766320 I
e macNem1.NW_012011356v1    2496436  0 -   2996164 C
e macFas5.chr4             29509936  0 - 170955103 C
e rheMac8.chr4             29846958  0 + 172585720 C
e gorGor5.CYUI01015250v1    5618876  0 +   6154872 C
e panPan2.chr6             29816039  0 + 173848474 C
e panTro5.chr6             29577805  0 + 175400573 C

a score=0.000000
s hg38.chr6_GL000254v2_alt   605552 191 +   4827813 cccggctaaaacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtaatggcgggcgcctgtagtcccagctacctgggaggctgaggcaggagaatggtgtgaacccgggaggcggagcttgcagtgagccgagatggtgccactgcactccagcctgggcgacagagcgagactccg
e canFam3.chr35            26161757  72 +  26524999 I
e otoGar3.GL873742          1991498 978 -   2232465 I
e colAng1.NW_012115566v1    2396660 775 -   3067355 M
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e chlSab2.chr17            28753263   0 -  71996105 C
e cerAty1.NW_012002711v1     243383 1559 +    766320 I
e macNem1.NW_012011356v1    2496436   0 -   2996164 C
e macFas5.chr4             29509936   0 - 170955103 C
e rheMac8.chr4             29846958   0 + 172585720 C
e gorGor5.CYUI01015250v1    5618876   0 +   6154872 C
e panPan2.chr6             29816039   0 + 173848474 C
e panTro5.chr6             29577805   0 + 175400573 C

a score=443.000000
s hg38.chr6_GL000254v2_alt   605743 19 +   4827813 tctcaaaaaaaaaaaaaaa
s canFam3.chr35            26161829 16 +  26524999 TCTCAAAACAGAATAA---
i canFam3.chr35            I 72 C 0
e otoGar3.GL873742          1991498 978 -   2232465 I
e colAng1.NW_012115566v1    2396660 775 -   3067355 M
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e chlSab2.chr17            28753263  0 -  71996105 C
e cerAty1.NW_012002711v1     243383 1559 +    766320 I
e macNem1.NW_012011356v1    2496436  0 -   2996164 C
e macFas5.chr4             29509936  0 - 170955103 C
e rheMac8.chr4             29846958  0 + 172585720 C
e gorGor5.CYUI01015250v1    5618876  0 +   6154872 C
e panPan2.chr6             29816039  0 + 173848474 C
e panTro5.chr6             29577805  0 + 175400573 C

a score=6202.000000
s hg38.chr6_GL000254v2_alt   605762 3 +   4827813 aag
s panTro5.chr6             29577805 3 + 175400573 AAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29816039 3 + 173848474 AAG
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             29846958 3 + 172585720 AAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29509936 3 - 170955103 AAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2496436 3 -   2996164 AAG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28753263 3 -  71996105 AAG
i chlSab2.chr17            C 0 C 0
s canFam3.chr35            26161845 1 +  26524999 --G
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742          1991498 978 -   2232465 I
e colAng1.NW_012115566v1    2396660 775 -   3067355 M
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I
e gorGor5.CYUI01015250v1    5618876 0 +   6154872 C

a score=323432.000000
s hg38.chr6_GL000254v2_alt   605765 118 +   4827813 aaTGACAGCATGGGATAGGAAAAGGTGGGATGACCTAAGTTAAAGAAAAGAAATTAACAATATGTTGCTTGAATTTATTTTTCTAGCGATAGAACTTTTGCAAATGAAAACACTTCTT
s panTro5.chr6             29577808 118 + 175400573 AATGACAGCATGGGATAGGAAAAGGTGGGATGACCTAAGTTAAAGAAAAGAAATTAACAATATGTTGCTTGAATTTATTTTTCTAGCGATAGAACTTTTGCAAATGAAAACACTTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29816042 118 + 173848474 AATGACAGCATGGGATAGGAAAAGGTGGGATGACCTAAGTTAAAGAAAAGAAATTAACAATATGTTGCTTGAATTTATTTTTCTAGCGATAGAACTTTTGCAAATGAAAACACTTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5618876 118 +   6154872 AATGACAGCATGGGATAGGAAAAGGTGGGATGACCTAAGTTAAAGAAAAGAAATTAACAATATGTTGCTTGAATTTATTTTTCTAGCGATAGAACTTTTGCAAATGAAAACACTTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29846961 118 + 172585720 AATGATAGCATGGGATAGGAAAAGGTGGGATGACCTAAGTTAAAGAAAGGAAAATAACAATATGTTGCTTGAATTCATTTTTCTAGTGATAGAACTTTTGCAAATGAAAACACTTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29509939 118 - 170955103 AATGATAGCATGGGATAGGAAAAGGTGGGATGACCTAAGTTAAAGAAAGGAAAATAACAATATGTTGCTTGAATTCATTTTTCTAGTGATAGAACTTTTGCAAATGAAAACACTTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2496439 118 -   2996164 AATGATAGCATGGGATAGGAAAAGGTGGGATGACCTAAGTTAAAGAAAGGAAAATAACAATATGTTGCTTGAATTCATTTTTCTAGTGATAGAACTTTTGCAAATGAAAACACTTCTT
i macNem1.NW_012011356v1   C 0 I 293
s chlSab2.chr17            28753266 118 -  71996105 AATGATAGCATGGGATAGGAAAAGGTGGGATGACCTAAGTTAAAGAAAGGAAAATAACAATATGTTGCTTGAATTCATTTTTCTAGTGATAGAACTTTTGCAAATGAAAACGCTTCTT
i chlSab2.chr17            C 0 C 0
s canFam3.chr35            26161846 111 +  26524999 AATGATCATATAGGCTATG-GAAGGTGAGGTGACTGCAGGTGAAGAAAA------ACTGTCATATTGCGTGGTTTTACTTTTCTCCATGTAGAACTTCCACAAATTAAAATACTTAAT
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742          1991498 978 -   2232465 I
e colAng1.NW_012115566v1    2396660 775 -   3067355 M
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=1883.000000
s hg38.chr6_GL000254v2_alt   605883 1 +   4827813 C
s panTro5.chr6             29577926 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29816160 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5618994 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29847079 1 + 172585720 C
i rheMac8.chr4             C 0 I 300
s macFas5.chr4             29510057 1 - 170955103 C
i macFas5.chr4             C 0 I 286
s chlSab2.chr17            28753384 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s canFam3.chr35            26161957 1 +  26524999 T
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742          1991498 978 -   2232465 I
e colAng1.NW_012115566v1    2396660 775 -   3067355 M
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I
e macNem1.NW_012011356v1    2496557 293 -   2996164 I

a score=284467.000000
s hg38.chr6_GL000254v2_alt   605884 268 +   4827813 ACCATGCACTTATGTACCTTTTGGTCCTAGAGAAGAAATAATTTATTTTCAAAGATGTGCTAACCTTGTGGGTTAATTGTTATTTAAATAACAACTATTTACTCATGAGAGAGAGTGACTTGCATGACATAAAAAATTTCATAATTATTTTTGTAAGTAAGAGAAACATACAGTTTCACTTTGCTTTACA-AAACAGTCTTTTGGGTAACAGTGTATAAATTACTTATACTCCAAATCACGGTTGCCACACACAACAA-TAACATTATTT
s panTro5.chr6             29577927 268 + 175400573 ACCATGCAGTTATGTACCTTTTGGTCCTAGAGAAGAAATAATTTATTTTCAAAGATGTGCTAACCTTGTGGGTTAATTGTTATTTAAATAACAACTATTTACTCATGAGAGAGAGTGACTTGCATGACATAAAAAATTTCATAATTATTTTTGTAAGTAAGAGAAACATACAGTTTCACTTTGCTTTACA-AAACAGTCTTTTGGATAACAGTGTATAAATTACTTATACTCCAAATCACGGTTGCCACACACAACAA-TAACATTATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29816161 268 + 173848474 ACCATGCAGTTATGTACCTTTTGGTCCTAGAGAAGAAATAATTTATTTTCAAAGATGTGCTAACCTTGTGGGTTAATTGTTATTTAAATAACAACTATTTACTCATGAGAGAGAGTGACTTGCATGACATAAAAAATTTCATAATTATTTTTGTAAGTAAGAGAAACATACAGTTTCACTTTGCTTTACA-AAACAGTCTTTTGGATAACAGTGTATAAATTACTTATACTCCAAATCACGGTTGCCACACACAACAA-TAACATTATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5618995 268 +   6154872 ACCATGCAGTTATGTACCTTTTGGTCCTAGAGAAGAAATAATTTATTTTCAAAGATGTGCTAACCTTGTGAGTTAATTGTTATTTAAATAACAACTATTTACTCATGAGAGAGAGTGACTTGCATGACATAAAAAATTTCATAATTATTTTTGTAAGTAAGAGAAACATACAGTTTCACTTTGCTTTACA-AAACAGTCTTTTGGATAACAGTGTATAAATTACTTATACTCCAAATCATGGTTGCCACGCACAACAA-TAACATTATTT
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            28753385 267 -  71996105 ACCATGCAGTTATGTACCTTTTGGT-CTACAGAATAAATAATTGATTTTCAAAGATGTGCTAACCTTTTGGGTTAATTGCTATTTAAGTAACAACTATTTACTCATGAGAGAGAGTGACTGGCATGATATTAAAAAATTCATAATTATTTTTGTAAGTAAGAGAAACATACAGTTTCACTTTGCTTTACA-AAACAGTCTTTTGGATAACAGTGAATAAATTACTTATACTCCAAATCCTGGTTGCCACACACTACAA-TAACATTATTT
i chlSab2.chr17            C 0 C 0
s canFam3.chr35            26161958 262 +  26524999 GCCTTCCAAATA-ATACAGTTTGATCTCAGAGAAGAAA-GATGCTTTTTGAAAGATGCAGTAATCTTTTGGGTCAAATA-TAAGCAAATAACAACTCCTTACTCATAAAGCAGACTGGT-----AGACATTAAAATTTTCAGAATCATTTTGGTAAGTAAAAAGAACATAAAATTTCACCTTGGTTTGCATAAACAGTCACTGGGAAATCATTATATAAATTATTTATATGCCAACTCATGGGTGCCATGCACTATAGTTAATACTATTT
i canFam3.chr35            C 0 I 3
e otoGar3.GL873742          1991498 978 -   2232465 I
e colAng1.NW_012115566v1    2396660 775 -   3067355 M
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I
e macNem1.NW_012011356v1    2496557 293 -   2996164 I
e macFas5.chr4             29510058 286 - 170955103 I
e rheMac8.chr4             29847080 300 + 172585720 I

a score=16061.000000
s hg38.chr6_GL000254v2_alt   606152 11 +   4827813 AAAACAACTTT
s panTro5.chr6             29578195 11 + 175400573 AAAACAACTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29816429 11 + 173848474 AAAACAACTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5619263 11 +   6154872 AAAACAACTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29510344 11 - 170955103 aaaaaaaCTCC
i macFas5.chr4             I 286 C 0
s chlSab2.chr17            28753652 11 -  71996105 AAAACAACTCT
i chlSab2.chr17            C 0 C 0
s canFam3.chr35            26162223 11 +  26524999 AAAACAGCTCA
i canFam3.chr35            I 3 C 0
e otoGar3.GL873742          1991498 978 -   2232465 I
e colAng1.NW_012115566v1    2396660 775 -   3067355 M
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I
e macNem1.NW_012011356v1    2496557 293 -   2996164 I
e rheMac8.chr4             29847080 300 + 172585720 I

a score=457724.000000
s hg38.chr6_GL000254v2_alt   606163 187 +   4827813 TTTGT--AAATCATTTTGTAAAATGG--AAAAAAAAGAACATGTTTGCATTAGGTGCTTCCTGCAGATAATAAAAACAAAATGGAATTTATTTTT-CCCTCAGATGTGTTTGACAT-GTGATAAAGGTAATTCTCACATAAGAAATATTGTAGAGTGCTTACAAAGAATATATAAATCATAAGAATAAATCAA-
s panTro5.chr6             29578206 187 + 175400573 TTTGT--AAATCATTTTGTAAAATGG--AAAAAAAAGAACATGTTTGCATTAGGTGCTTCCTGCAGGTAATAAAAACAAAATGGAATTTATTTTT-CCCTCAGATGTGTTTGACAT-GTGATAAAGGTAATTCTCACATAAGAAATATTGTAGAGTGCTTACAAAGAATATATAAATCATAAGAATAAATCAA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29816440 186 + 173848474 TTTGT--AAATCATTTTGTAAAATGG---AAAAAAAGAACATGTTTGCATTAGGTGCTTCCTGCAGGTAATAAAAACAAAATGGAATTTATTTTT-CCCTCAGATGTGTTTGACAT-GTGATAAAGGTAATTCTCACATAAGAAATATTGTAGAGTGCTTACAAAGAATATATAAATCATAAGAATAAATCAA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5619274 187 +   6154872 TTTGT--AAATCATTTTGTAAAATGG--AAAAAAAAGAACATGTTTGCATTAGGTGCTTCCTGCAGATAATAAAAACAAAATGGAATTTATTTTT-CCCTCAGATGTGTTTGACAT-GTGATAAAGGTAATTCTCACGTAAGAAATATTGTAGAATGCTTACAAAGAACATATAAATCATAAGAATAAATCAA-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29847380 189 + 172585720 TTTGT--AAATCATTTTGTAAAACGG-AAAAAAAGAGAACATGTTTGCATTAGGTGCTTCCTGCAGAAAATAAAAACAAAACGGAATTTATTTTC-CCCTCAGATATGTCTGACGTAGTGATAAAGGTAATTTTCACATGAGAAATACTGTAGAATGCTTACAAACAGTATATAAATGGTAAGAATAAATCAA-
i rheMac8.chr4             I 300 C 0
s macFas5.chr4             29510355 189 - 170955103 TTTGT--AAATCATTTTGTAAAACGG-AAAAAAAGAGAACATGTTTGCATTAGGTGCTTCCTGCAGAAAATAAAAACAAAACGGAATTTATTTTC-CCCTCAGATATGTCTGACGTAGTGATAAAGGTAATTTTCACATGAGAAATACTGTAGAATGCTTACAAACAGTATATAAATGGTAAGAATAAATCAA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2496850 187 -   2996164 TTTGT--AAATCATTTTGTAAAAGAA-AAAATGAGAGAACATGTTTGCATTAGGTGCTTCCTGCAGATAAT-AAAACAAAACGGAATTTCTTTTCTCCCTCAGATATGTCTGACGTAGTGATAAAGGTAATTTTCACATGAGAAATACTGTAGAAG--CTACAAACAGTATATAAATGGTAAGAATAAATCAA-
i macNem1.NW_012011356v1   I 293 C 0
s chlSab2.chr17            28753663 190 -  71996105 TTTGT--AAATCATTTTGTAAAACGGAAAAAAAAGAGAACATGTTTGCATTAGGTGCTTCCTGCAGATAATAAAAACAAAATGGAATTTATTTTC-CCCTCAGATATGTTTGATGTAGTGATAAAGGTAATTTTCACATGAGAAATACTGTAGAATGCTTACAAACAGTATATAAATGGTAAGAATAAATCAA-
i chlSab2.chr17            C 0 C 0
s canFam3.chr35            26162234 173 +  26524999 TTTGTAAAAACCATTTCATAAAATGA---AAAGGTAGAACAT-TTTATATTAGATGCTTACTGCAGATAAGAAAGAGAAAATAGAATCCA-TTTC-CCCTAATATATGTTTCACATAACCATAAAAATAATTTTCACATGACAAGTACTATATGGTGATCCCTGA---------------AAGGATCAAACAAA
i canFam3.chr35            C 0 C 0
e otoGar3.GL873742          1991498 978 -   2232465 I
e colAng1.NW_012115566v1    2396660 775 -   3067355 M
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=510003.000000
s hg38.chr6_GL000254v2_alt   606350 164 +   4827813 ACACAAGTCACTAGAACTTGTATTGCCATATTAATATAATTATTCCAAAATAAAAGTTAATCTATAGTTTCCTAAAAAAGATGACCTTTGAAAAGGACAAAAGAGAAATATTACAGCTACGTGAACTGGCATTTTGAATGTt--------gatatggtttggttctgtttcc
s panTro5.chr6             29578393 164 + 175400573 ACACAAGTCACTAGAACTTGTATTGCCATATTAATATAACTATTCCAAAATAAAAGTTAATCTATAGTTTCCTAAAAAAGATGACCTTTGAAAAGGACAAAAGAGAAATATTACAGCTACGTGAACTGGCATTTTGAATGTt--------gatatggtttggttctgtttcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29816626 164 + 173848474 ACACAAGTCACTAGAACTTGTATTGCCATATTAATATAACTATTCCAAAATAAAAGTTAATCTATAGTTTCCTAAAAAAGATGACCTTTGAAAAGGACAAAAGAGAAATATTACAGCTACGTGAACTGGCATTTTGAATGTt--------gatatggtttggttctgtttcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5619461 164 +   6154872 ACACAAGTCACTAGAACTTGTATTGCCATATTAATATAATTATTCCAAAATAGAGGTTAATCTATAGTTTCCTAAAAAAGATGACCTTTGAAAAGGACAAAAGAGAAATATTACAGCTACGTGAACTGGCATTTTGAATGTt--------gatatggtttggttctgtttcc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29847569 145 + 172585720 ACACAAGTCACTGGAACTTGTATTGCAATATTAACATAATTATGCCAAAATAAAGGTTAATCTATAG-------------------TTTGAGAAAGACAAAAGAGAAATACTACAGCTATGTGAACTGGCGCTTTGAATGTt--------gatatggtttggttctgtgtcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29510544 145 - 170955103 ACACAAGTCACTGGAACTTGTATTGCAATATTAACATAATTATGCCAAAATAAAGGTTAATCTATAG-------------------TTTGAGAAAGACAAAAGAGAAATACTACAGCTATGTGAACTGGCGCTTTGAATGTt--------gatatggtttggttctgtgtcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2497037 145 -   2996164 ACACAAGTCACTGGAACTTGTATTGCAATATTAACATAATTATGCCAAAATAAAGGTTAATCTATAG-------------------TTTGAGAAAGACAAAAGAGAAATACTACAGCTATGTGAACTGGCGCTTTGAATGTt--------gatatggtttggttctgtgtcc
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28753853 164 -  71996105 ACACAAGTCACTGGAACTTGTATTGCAATATTAATATAATTATTCCAAAATAAAGGTTAATCTATAGTTTCCTAAAAAAGATGACCTTTGAGAAAGACAAAAGAGAAATATTACAGCTGTGTGAACTGGTGCTTTGAATGTT--------GATATGGTTTGGTTCTGTGTCC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2397444 164 -   3067355 ACACAAGTCACTGGAACTTGTATTGCAATATTAACATAATTATTCCAAAATAAAGGTTAATCTATAGTTTCCTAAAAAAGATGACCTTTGAGAAAGACAAAAGAGAAATATTACAGCTATGTGAACTGGCGCTTTGAATGTC--------gatatggtttggttctgtgtcc
i colAng1.NW_012115566v1   M 775 C 0
s canFam3.chr35            26162407 166 +  26524999 GTATAGGTCACTCGAACTTGTCCTGC-ATATTTATGTAATTATTCCAAAATGAGGATTAATCTGAGGTTTCTTGGAAAA----ATATTTGAGCA-TACAAGAGAGAAACATTATGGTTGCATGAACTGGTGTTTCAAATATCTTCTCTCAAATTCCATTTGATTCTATTTTC
i canFam3.chr35            C 0 I 22
e otoGar3.GL873742          1991498 978 -   2232465 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=2809744.000000
s hg38.chr6_GL000254v2_alt   606514 944 +   4827813 ccacccacatcttacaactcgaattgtaatccccaagtgtcgagggacggaggtgattggatcatgggggtggtttcccccatgctgttctcatgatagtgagtgagttctcaagagctctgatggctttattagtgtttggaagttcctccttcactcttctctctcctgccaccatgtgaagaaggttcttgtttccccttcactttctgctataattgtaagtttcctgaggcatccccagccatgcagaactgtgagtcaattaagcctctttcttttataattacccactctcaggtagtattctttatagcaatgtgaaaacggactaatacaAATGTCTTACCCCAAATTAAGTTTGATTA-TTTTTTCtttttttaaaaaaacagctttattgggagtataatatacaaagaattgcacatacttaatatgtacaagttgatgagctttgacatatacaaatatccatgataccattaccacaatcaaggtaatagacgtatctatcaccttccaaagttccgttgcatccctttgctttttttttttgttttttttttt--ataagaacacaacatgagatttaccctcttagcaaattttgaagtgcacaatacctatagccactatgttgcacagtagagctcttattcatctagcataactgaaactgtatactcattggaaaacaatttccctatctccatttcccccatcccctacccttggcaataactttcattctctacttcta-gaggctaaatgttacaggtcctcacataagtggactcatggagtattagtctttctgagaggcttatttcactgagcatagtgctctccaggttcatccatgttgttgcaaatggaataaactttttatttttaaaggatgaTTTTGCATTTTCAAACTAAAAAATTGGAATACCTCTCACTCTAT
s panTro5.chr6             29578557 946 + 175400573 ccacccacatcttacaactcgaattgtaatccccaagtgtcgagggagggaggtgattggatcatgggggtggtttcccccatgctgttctcatgatagtgagtgagttctcaagagctctgatggctttattagtgtttggaagttcctccttcactcttctctctcctgccaccatgtgaagaaggttcttgttttcccttcactttctgctataattgtaagtttcctgaggcatccccagccatgcagaactgtgagtcaattaagcctctttcttttataattacccactctcaggtagtattctttatagcaatgtgaaaacggactaatacaAATGTCTTACCACAAATTAAGTTTGATTA-TTTTTTCtttttttaaaaaaacagctttattgggagtataatatacaaagaattgcacatacttaatatgtacaagttgatgagctttgacatatacaaatatccatgataccattaccacaatcaaggtaatagacgtatctatcaccttccaaagttccgttgcatccctttgctttttttgtttttttgttttttttaataagaacacaacatgagatttaccctcttagcaaattttgaagtgcacaatacctatagccactatgttgcacagtagagctcttattcatctagcataactgaaactgtatactcattggaaaacaatttccctatctccatttcccccatcccctacccttggcaataactttcattctctacttcta-gaggctaaatgttacaggtcctcacataagtggactcatggactattagtctttctgagaggcttatttcactgagcatagtgctctccaggttcatccatgttgttgcaaatggaataaactttttatttttaaaggctgaTTTTGCATTTTCAAACTAAAAAATTGGAATACCTCTCACTCTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29816790 945 + 173848474 ccacccacatcttacaactcgaattgtaatccccaagtgtcgagggagggaggtgattggatcatgggggtggtttcccccatgctgttctcatgatagtgagtgagttctcaagagctctgatggctttattagtgtttggaagttcctccttcactcttctctctcttgccaccatgtgaagaaggttcttgttttcccttcactttctgctataattgtaagtttcctgaggcatccccagccatgcagaactgtgagtcaattaagcctctttcttttataattacccactctcaggtagtattctttatagcaatgtgaaaacggactaatacaAATGTCTTACCACAAATTAAGTTTGATTA-TTTTTTCtttttttaaaaaaacagctttattgggagtataatatacaaagaattgcacatacttaatatgtacaagttgatgagctttgacatatacaaatatccatgataccattaccacaatcaaggtaatagacgtatctatcaccttccaaagttccgttgcatccctttgctttttttgttt-tttgttttttttaataagaacacaacatgagatttaccctcttagcaaattttgaagtgcacaatacctatagccactatgttgcacagtagagctcttattcatctagcataactgaaactgtatactcattggaaaacaatttccctatctccatttcccccatcccctacccttggcaataactttcattctctacttcta-gaggctaaatgttacaggtcctcacataagtggactcatggactattagtctttctgagaggcttatttcactgagcatagtgctctccaggttcatccatgttgttgcaaatggaataaactttttatttttaaaggctgaTTTTGCATTTTCAAACTAAAAAATTGGAATACCTCTCACTCTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5619625 944 +   6154872 ccacccacatcttacaactcgaattgtaatccccaagtgtcgagggagggaggtgattggatcacgggggtggtttcccccatgctgttctcatgatagtgagtgagttctcaagagctctgacggctttattagtgtttggaagttcctccttcactcttctctctcctgccaccatgtgaagaaggttcttgtttccccttcactttctgctataattgtaagtttcctgaggcatccccagccatgcagaactgtgagtcaattaagcctctttcttttataattacccactctcagatagtattcttgatagcaatgtgaaaacggactaataGAAATGTCTTACCCCAAATTAAGTTTGATTATTTTTTTCtttttttaaaaaaacagctttattgggagtataatatacaaagaattgcacatacttaatatgtacaagttgatgagctttgacatatacaaatatccatgataccattaccacagtcaaggtaatagacgtatctatcaccttccaaagttccgttgcatccctttgctttttttgtttttttgtttttttt-ataagaacacaacatgagatttaccctcttagcaaattttgaagtgcacaatacctatagtcactatgttgcacagtagagctcttattcatctagcataactgaaactgtatactcattggaaaacaatttccctatctccatttcccccatcccctacccttggcaataactttcattctctacttcta-gaggctaaatgttacaggtcctcacataagcggactcatggactattagtctttctgagaggcttatttctctgagcatagtgctctccaggttcatccatgttgttgcaaatggaataaactttttatttttaaaggctgaTTTTGCATTTTCAAACTAAAAAACTGGAATAC--CTCACTCTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29847714 918 + 172585720 ccacccaaatcttacaactcgaattgtaatccccaagtgttgagggagggaggtgactggatcatgggtttggtttctcccatgctgttctcgtgatagtgaatgagttctcaagagctctgatggctttataagtgtttggaagttcctgcttcactcttctctttcctgccaccatgtgaagaaggttcttgtttccccttcactttctgctgtaattgtaagttttcggaggcatccccagtcatgcagaactgtgagtcaattaagcctctttcttttaaaattgcccactctcaggtagtattctttatagcaatg--------------------tgTCTTACCCCAAATTAAGTTTGATTA-TTTTTTCTTTAAAAAAAAaaacagctttattgggagtataatatgcaaagaactgcacatacttaacatgtacaatttgatgaactttgacatatacaaatatccatgatgccatcaccacaatcaaagtaatagacatacctatcaccttccaaagtttccttgaatccctctgcttttttgttttgtttgtg-------ataagaacataacatgagatttaccctcttagcaaattttgaagtgcacaatacctataggcactatgttgcacagtagagctcttattcatctagcataactgaaactgtacactcattgaaaaacaattttcccatctccatttcccccatcccctacccttgacaataactttcattctcttcttctatgaggttagctgttacaggtcctcatataagtggactcatgcagtattagtctttctgagaggcttatttcacttagcatagtggtctccaggttcatccatgttgttgcaaatggaataaactttttcattttaaaggctgaTTTTGCATTTTCAAACTAAAAAATTGGAATAC--CTCACTCTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29510689 916 - 170955103 ccacccaaatcttacaactcgaattgtaatccccaagtgttgagggagggaggtgactggatcatgggtttggtttctcccatgctgttctcgtgatagtgaatgagttctcaagagctctgatggctttataagtgtttggaagttcctgcttcactcttctctttcctgccaccatgtgaagaaggctcttgtttccccttcactttctgctgtaattgtaagttttcggaggcatccccagtcatgcagaactgtgagtcaattaagcctctttcttttataattgcccactctcaggtagtattctttatagcaatg--------------------tgTCTTACCCCAAATTAAGTTTGATTA-TTTTTTCTTT--AAAAAAaaacagctttattgggagtataatatgcaaagaactgcacatacttaacatgtacaatttgatgaactttgacatatacaaatatccatgatgccatcaccacaatcaaagtaatagacatacctatcaccttccaaagtttccttgaatccctctgcttttttgttttgtttgtg-------ataagaacataacatgagatttaccctcttagcaaattttgaagtgcacaatacctataggcactatgttgcacagtagagctcttattcatctagcataactgaaactgtacactcattgaaaaacaattttcccatctccatttcccccatcccctacccttgacaataactttcattctcttcttctatgaggttaactgttacaggtcctcatataagtggactcatgcagtattagtctttctgagaggcttatttcacttagcatagtggtctccaggttcatccatgttgttgcaaatggaataaactttttcattttaaaggctgaTTTTGCATTTTCAAACTAAAAAATTGGAATAC--CTCACTCTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2497182 917 -   2996164 ccacccaaatcttacaactcgaattgtaatccccaagtgttgagggagggaggtgactggatcatgggtttggtttctcccatgctgttctcgtgatagtgaatgagttctcaagagctctgatggctttataagtgtttggaagttcctgcttcactcttctctttcctgccaccatgtgaagaaggttcttgtttccccttcactttctgctgtaattgtaagttttcggaggcatccccagtcatgcagaactgtgagtcaattaagcctctttcttttataattgcccactctcaggtagtattctttatagcaatg--------------------tgTCTTACCCCAAATTAAGTTTGATTA-TTTTTTCTTT-AAAAAAAaaacagctttattgggagtataatatgcaaagaactgcacatacttaacatgtacaatttgatgaactttgacatatacaaatatccatgatgccatcaccacaatcaaagtaatagacatacctatcaccttccaaagtttccttgaatccctctgcttttttgttttgtttgtg-------ataagaacataacatgagatttaccctcttagcaaattttgaagtgcacaatacctataggcactatgttgcacagtagagctcttattcatctagcataactgaaactgtacactcattgaaaaacaattttcccatctccatttcccccatcccctacccttgacaataactttcattctcttcttctatgaggttaactgttacaggtcctcatataagtggactcatgcagtattagtctttctgagaggcttatttcacttagcatagtggtctccaggttcatccatgttgttgcaaatggaataaactttttcattttaaaggctgaTTTTGCATTTTCAAACTAAAAAATTGGAATAC--CTCACTCTAT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28754017 911 -  71996105 CCACCCAAATCTTACAGCTCGAATTGTAATCCCCAAGTGTTGAgggagggaggtgactggatcatgggattggtttctcccatgctgttctcgtgatagtgaatgagttctcaagagctctgatggctttataagtgtttggaagttcctccttcactcttctcttttctgccaccacgtgaagaaggttcttgtttccccttcactttctgctataattgtaagtttcctgaggcatccccagtcatgcag-actgtgagtcaattaagcctctttcttttataattacccactctcaggtagtattctttatagcaatg--------------------tgtcttaccccaaattaactttgatta-ttttttctta--aaaaaaaaacaactttattgggagtataatatgcaaagaactgcacatacttaatatgtacaattcgatgaactttgacatatacaaatatccatgatgccatcaccacaatcaaagtagtagacatatctattaccttccaaagtttccttgactccctctgcttttttgttttgtttgtg-------ataagaacacaacatgagatttaccctcttagcaaattttgaagtgtacaatacctataggcactatgttgcacagtagagctcttattcatctagcataactgaaactgtacactcattgaaaaacaa-tttcccatctccgtttcccccatcccctacccttggcaataactttcattctcttcttctatgagggtaactgttacaggtcctcatataagtggactcatgcagtattagtctttctgagaggcttatttcacttagcatagtggtctccaggttcatccatgttgttgcaaatggaatacattttttcgttttaaaggctgattttgcattttcaaac-aaaaaattGGAATAC--CTCA--CTAT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2397608 916 -   3067355 ccacccaaatcttacaactcgaattgtaatccccaagtgttgagggagggaggtgactggatcatgggattggtttctcccatgctgttctcgtgatagtgagtgagttctcaagagctctgatggctttgtaagtgtttggaagttcctccttcactcttctctttcctgccactatgtgaagaaggttcttgtttccccttcacttcctgctataattgtaagtttcctgaggcatccccagtcatgcagaattgtgagtcaattaagcctctttcttttataattacccactctcaggtagtattctttatagcaatg--------------------tgTCTTACCCCAAATTAAGTTTGATTA-TTTTTTCTTT--AAAAAAaaacagctttattgggagtataatatgcaaagaactgcacatacttaatatgtacaattggatgaactttgacatatacaaatatccatgatgccatcaccacgatcaaagtaatagacacatctgtcaccttccaaagtttccttgaatccctctgcttttttgttttgtttgtg-------ataagaacacaacatgagatttaccctcttagcaaattttgaagtgcataatacctataggcactatgttgcacagtggagctcttattcatctagcataactgaaactgtacactcattgaaaaacaatttccccatctccgtttcccccatcccctacccttgacaataattttcattctcttcttctatgaggttaactgttacaggtcctcatataagtggactcatgcagtattagtctttctgagaggcttatttcactcagcatagtggtctccaggttcatccatgttgttgcaaatggaataaactttttcattttaaaggctgaTTTTGCATTTTCAAACTAAAAAATTGGAATAC--CTCACTCTAT
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35            26162573  22 +  26524999 I
e otoGar3.GL873742          1991498 978 -   2232465 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=600561.000000
s hg38.chr6_GL000254v2_alt   607458 165 +   4827813 TTGTTTGAAAATAGGCAGGATACATAGGTCCACAATCATGCTCACTGTACTCATAACCCCACCTTTTTACCAGCTATCTATTGTCGTTTGATTTCAATTAACAGTTAGATTTGAGTGAGGCTTGAATAGGATGATCATGAGAATGGTTCTAGCATGTGAGTCTGA
s panTro5.chr6             29579503 165 + 175400573 TTGTTTGAAAATAGGCAGGATACATAGGTCCACAATCATGCTCACTGTACTCATAACCCCACCTTTTTACCAGCTATCTATTGTCGTTTGATTTCAATTAACAGTTAGATTTGAGTGAGGCTTGAATAGGATGATCATGAGAATGGTTCTAGCATGTGAGTCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29817735 165 + 173848474 TTGTTTGAAAATAGGCAGGATACATAGGTCCACAATCATGCTCACTGTACTCATAACCCCACCTTTTTACCAGCTATCTATTGTCGTTTGATTTCAATTAACAGTTAGATTTGAGTGAGGCTTGAATAGGATGATCATGAGAATGGTTCTAGCATGTGAGTCTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5620569 165 +   6154872 TTGTTTGAAAATAGGCAGGATACATAGGTCCACAATCATGCTCACTGTACTCATAACCCCACCTTTTTACCAGCTATCTATTGTCGTTTGATTTCAATTAACAGTTAGATTTGAGTGAGGCTTGAATAGGATGATCATGAGAATGGTTCTAGCATGTGAGTCTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29848632 165 + 172585720 TTGTTTGAAAATAGGTAGGATACGTAGGTCCACAATCATGCTCACTGTACTCATAACCCCACATTTTTACCAGCTATCTATTGTCATTTGATTTCAATTCACAGTTAGATTTGAGTGAGGATTGAATAGGATGATCATGAGAATGGTTCTAGCATGTGAGTCTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29511605 165 - 170955103 TTGTTTGAAAATAGGTAGGATACGTAGGTCCACAATCATGCTCACTGTACTCATAACCCCACATTTTTACCAGCTATCTATTGTCATTTGATTTCAATTCACAGTTAGATTTGAGTGAGGATTGAATAGGATGATCATGAGAATGGTTCTAGCATGTGAGTCTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2498099 165 -   2996164 TTGTTTGAAAATAGGTAGGATACGTAGGTCCACAATCATGCTCACTGTACTCATAACCCCACATTTTTACCAGCTATCTATTGTCATTTGATTTCAATTCACAGTTAGATTTGAGTGAGGATTGAATAGGATGATCATGAGAATGGTTCTAGCATGTGAGTCTGA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28754928 165 -  71996105 TTGTTTGAAAATAGGTAGGATACGTAGGTCCACAATCATGCTCACTGTACTCATAACCCCACATTTTTACCAGCTATCTATTGTCATTTGATTTCAATTCACAGTTAGATTTGAGTGAGGCTTGAATAGGATGATCATGAGAATGGTTCTAGCATGTGAGTCTGA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2398524 165 -   3067355 TTGTTTGAAAATAGGTAGGATAAGTAGGTCCACAATCATGCTCCCTGTACTCATAACCCCACATTTTTACCAGCTATCTATTGTCATTTGATTTCAATTCACAGTTAGATTTGAGTGAGGCTTGAATAGGATGATCATGAGAATGGTTCTAGCATGTGAGTCTGA
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35            26162595 164 +  26524999 TTGTTTGAAAATGCACAGGAGTCATAGATCCAGATTCATGGTCCCTGCAGTCATGA-TGCATGTTTCTACCTGATAGGTGGTCTCATTTTATATGAATTTGCAGTTGGATCTGAGTGAGGTTGAAATGAGACAGTCACAGGAATAGTTCTGAGATGTGAGTCTGA
i canFam3.chr35            I 22 I 38
e otoGar3.GL873742          1991498 978 -   2232465 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=30780.000000
s hg38.chr6_GL000254v2_alt   607623 9 +   4827813 GTAGCTATC
s panTro5.chr6             29579668 9 + 175400573 GTAGCTATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29817900 9 + 173848474 GTAGCTATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5620734 9 +   6154872 GTAGCTATC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29848797 9 + 172585720 GTAGCTATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29511770 9 - 170955103 GTAGCTATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2498264 9 -   2996164 GTAGCTATC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28755093 9 -  71996105 GTAGCTATC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2398689 9 -   3067355 GTAGCTATC
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35            26162759 38 +  26524999 I
e otoGar3.GL873742          1991498 978 -   2232465 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=305864.000000
s hg38.chr6_GL000254v2_alt   607632 91 +   4827813 AAGGTTTCCAATT--ACCTTGAAGCAGGACTTAACTCTCGGTCATATCACTTTTGTGTACGTATATAAAA----ACACAAATACATAAATAAAAATC
s panTro5.chr6             29579677 91 + 175400573 AAGGTTTCCAATT--ACCTTGAAGCAGGACTTAACTCTCGGTCATATCACTTTTGTGTATGTATATAAAA----ACACAAATACATAAATAAAAATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29817909 91 + 173848474 AAGGTTTCCAATT--ACCTTGAAGCAGGACTTAACTCTCGGTCATATCACTTTTGTGTATGTATATAAAA----ACACAAATACATAAATAAAAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5620743 91 +   6154872 AAGGTTTCCAATT--ACCTTGAAGCAGGACTTAACTCTTGGTCATATCACTTTTGTATACGTATATAAAA----ACACAAATACATAAATAAAAATC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29848806 91 + 172585720 AAGGTTTCCAATT--ACCTTGAAGCAGGACTTAACTATAGCTCCTATCACTTTTGTATATGTATATAAAA----ATACAAATACAGTAATAAAAACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29511779 91 - 170955103 AAGGTTTCCAATT--ACCTTGAAGCAGGACTTAACTATAGCTCCTATCACTTTTGTATATGTATATAAAA----ATACAAATACAGTAATAAAAACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2498273 91 -   2996164 AAGGTTTCCAATT--ACCTTGAAGCAGGACTTAACTATAGCTCCTATCACTTTTGTATATGTATATAAAA----ATACAAATACAGTAATAAAAACC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28755102 91 -  71996105 AAGGTTTCCAATT--ACCTTGAAGCAGGACTTAACTGTAGCTCCTATCACTTTTGTATATGTATATGAAA----ATACAACTACAGTAATAAAAATC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2398698 91 -   3067355 AAGGTTTCCAATT--ACCTTGAAGCAGGACTTAACTCTAGCTCCTATCACTTTTGTATATGTATGTAAAA----ATACAAATATAGTAATAAAAACC
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35            26162797 97 +  26524999 AAAGTTTCCAAATCAGCCTTAAAGCAGGATTTAACCATTAGTCATATCATTTTTGTGTGTGTATATAAAAACTTACTCAAGTATGTTAATAAAAGTA
i canFam3.chr35            I 38 C 0
e otoGar3.GL873742          1991498 978 -   2232465 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=724492.000000
s hg38.chr6_GL000254v2_alt   607723 254 +   4827813 AATGAGACTTATTTCATGGAGttgtttttttttttttt-----tttttGCTGTAGAATAGTAATATATTTGTTTATGTCATGAAGTACACACCAGGAGATTGGTAATGGAAAACAACTGGTAAATTAGATATTAAAATTTTGATATATCATTTCAAAACCAAACCAGATTAAAATTTAAAAAGCATATAATTTTCATTTGAATTAAATGACATTATCTGCAATTTTCAACAAGATAAAAGTATACATCCTCTGCCCAAC
s panTro5.chr6             29579768 249 + 175400573 AATGAGACTTATTTCATGGAGTTGTTTTTTTTTTTTTT----------GCTGTAGAATAGTAATATATTTGTTTATGTCATGAAGTACACACCAGGAGATTGGTAATGGAAAACAACTAGTAAATTAGATATTAAAATTTTGATATATCATTTCAAAACCAAACCAGATTAAAATTTAAAAAGCATATAATTTTCATTTGAATTAAATGACATTATCTGCAATTTTGAACAAGATAAAAGTATACGTCCTCTGCCCAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29818000 250 + 173848474 AATGAGACTTATTTCATGGAGTTGTTTTTTTTTTTTTT---------TGCTGTAGAATAGTAATATATTTGTTTATGTCATGAAGTACACACCAGGAGATTGGTAATGGAAAACAACTAGTAAATTAGATATTAAAATTTTGATATATCATTTCAAAACCAAACCAGATTAAAATTTAAAAAGCATATAATTTTCATTTGAATTAAATGACATTATCTGCAATTTTGAACAAGATAAAAGTATACGTCCTCTGCCCAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5620834 259 +   6154872 GATGAGACTTATTTCATGGAGttgttttttttttttttttttttttttGCTGTAGAATAGTAATATATTTGTTTATGTCATGAAGTACACACCAGGAGATTGGTAATGGAAAACAACTGGTAAATTAGATATTAAAATTTTGATATATCATTTCAAAACCAAACCAGATTTAAATTTAAAAAGCATATAATTTTCATTTGAATTAAATGACATTATCTGCAATTTTGAACAAGATAAAAGTATACGTCCTCTGCCCAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29848897 242 + 172585720 AATGAGACTTATTTCATGGAGTTGTTGTTTT-----------------GCTTTAGAATAAGAATATATTTGTTTACATCTTGAAGTACTCACCAGGAGATTGGTAATGGAAGACAACTGGTAAATTAGATATTAAAATTTTGATGTATCATTTCAAAACTAAACCAGATTAAAATTAAGAAAGCATTTAATTTTCTTTTGAATTAAATGACATTATCTGCAATTTTGAACAAGATAAAAGTATATGTCCTCTGCTCAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29511870 242 - 170955103 AATGAGACTTATTTCATGGAGTTGTTGTTTT-----------------GCTTTAGAATAAGAATATATTTGTTTACATCTTGAAGTACTCACCAGGAGATTGGTAATGGAAGACAACTGGTAAATTAGATATTAAAATTTTGATGTATCATTTCAAAACTAAACCAGATTAAAATTAAGAAAGCATTTAATTTTCTTTTGAATTAAATGACATTATCTGCAATTTTGAACAAGATAAAAGTATATGTCCTCTGCTCAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2498364 242 -   2996164 AATGAGACTTATTTCATGGAGTTGTTGTTTT-----------------GCTTTAGAATAAGAATATATTTGTTTACATCTTGAAGTACTCACCAGGAGATTGGTAATGGAAGACAACTGGTAAATTAGATATTAAAATTTTGATGTATCATTTCAAAACTAAACCAGATTAAAATAAAGAAAGCATTTAATTTTCTTTTGAATTAAATGACATTATCTGCAATTTTGAACAAGATAAAAGTATATGTCCTCTGCTCAAC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28755193 242 -  71996105 AATGAGACTTATTTCATGGAGTTGTTGTTTT-----------------GCTTTAGAATAATAATATATTTGTTTATATCTTGAAGTACTCACCAGGAGATTGGTAATGGGAGACAACTGGTAAATTAGATATTAAAATTTTGATGTATCATTTCAAAACTAAACCAGATTAAAATTAAGAAAGCATTTAATTTTCTTTTGAATTAAATGACATTATCTGCAATTTTGAACAAGATAAAAGTATATGTCCTCTGCTCAAC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2398789 242 -   3067355 AATGAGACTTATTTCATGGAGTTGTTGTTTT-----------------GCTTTAGAATAATAATATATTTGTTTATATCTTGAAGTACTCACCAGGAGATTGGTAATGGAAGACAACTGGTAAATTAGATATTAAAATTTTGATGTATAATTTCAAAACTAAACCAGATTAAAATTAAGAAAGCATATAAATTTCATTTGAATTAAATGACATTATTTGCAATTTTGAATAAGATAAAAGTATATGTCCTCTGCTCAAC
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr35            26162894   0 +  26524999 C
e otoGar3.GL873742          1991498 978 -   2232465 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=149487.000000
s hg38.chr6_GL000254v2_alt   607977 36 +   4827813 TAGTAACATGAGAATATCCTTGCATAATGTACCTCT
s panTro5.chr6             29580017 36 + 175400573 TAGTAACATGAGAATATCCTTGCATAATGTACCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29818250 36 + 173848474 TAGTAACATGAGAATATCCTTGCATAATGTACCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5621093 36 +   6154872 TAGTAACATGAGAATATCCTTGCATAATGTACCTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29849139 36 + 172585720 TAGTAACATGAGAATGTCCTTGCATAATGTACCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29512112 36 - 170955103 TAGTAACATGAGAATGTCCTTGCATAATGTACCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2498606 36 -   2996164 TAGTAACATGAGAATGTCCTTGCATAATGTACCTCT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28755435 36 -  71996105 TAGTAACATGAGAATGTCCTTGCATAATGTACCTCT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2399031 36 -   3067355 TAGTAACATGAGAATGTCCTTGCATAATGTACCTCT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     358680 36 +    730504 TAGTAACATGAGAATGTCCTTGCATAATGTACCTCT
i proCoq1.NW_012152574v1   N 0 I 834
e canFam3.chr35            26162894  0 +  26524999 C
e otoGar3.GL873742          1991498 978 -   2232465 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=25118.000000
s hg38.chr6_GL000254v2_alt   608013 8 +   4827813 GCCCCATA
s panTro5.chr6             29580053 8 + 175400573 GCCCCATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29818286 8 + 173848474 GCCCCATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5621129 8 +   6154872 GCCCCATA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29849175 8 + 172585720 GTCCCATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29512148 8 - 170955103 GTCCCATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2498642 8 -   2996164 GTCCCATA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28755471 8 -  71996105 GTCCCATA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2399067 8 -   3067355 GTCCCATA
i colAng1.NW_012115566v1   C 0 C 0
e proCoq1.NW_012152574v1     358716 834 +    730504 I
e canFam3.chr35            26162894 0 +  26524999 C
e otoGar3.GL873742          1991498 978 -   2232465 I
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=642834.000000
s hg38.chr6_GL000254v2_alt   608021 186 +   4827813 TAATATTTTACTTAGTTATGTATGCAGTCTAGTATCATTGAGCAGATGATACTTTCATGCATTTTAGAAAATAAAACATATGAAAGCTATACGATGGAATATTTTTCTCATATTGATGTGGCAAACATTTATTTACCACATCAATTCATTTCCTCCAAATAAAAACTGATACTAGTTTCTTGATAC----
s panTro5.chr6             29580061 186 + 175400573 TAATATTTTACTTAGTTATGTATGCAGTCTAGTATCATTGAGCAGATGATACTTTCATGCATTTTAGAAAATAAAACATATGAAAGCTATACGATGGAATATTTTTCTCATATTGATGTGGCAAACATTTATTTACCACATCAATTCATTTCCTCCAAATAAAAACTGATACTAGTTTCTTGATAC----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29818294 186 + 173848474 TAATATTTTACTTAGTTATGTATGCAGTCTAGTATCATTGAGCAGATGATACTTTCATGCATTTTAGAAAATAAAACATATGAAAGCTATACGATGGAATATTTTTCTCATATTGATGTGGCAAACATTTATTTACCACATCAATTCATTTCCTCCAAATAAAAACTGATACTAGTTTCTTGATAC----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5621137 186 +   6154872 TAATATTTTACTTAGTTATGTATGTAGTCTAGTATCATTGAGCAGATGATACTTTCATGCATTTTAGAAAATAAAACATATGAAAGCTATACGATGGAATATTTTTCTCATTTTGATGTGGCAAACATTTATTTACCACATCAATTCATTTCCTCCAAATAAAAACTGATACTAGTTTCTTGATAC----
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29849183 186 + 172585720 TAATAATTTACTTAGTTATGTATGTAGTCTAGTATCATTGAGCAGATGATACTTTCATGCATTTTAGAAAATAAAACATATGAAAGCTATATGATGGAATATTTTTCTCATATTGATGTGGCAAACATTTATTTACCACATCAATTCATTTCCTCCAAATAAAAACTGATACTAGTTTCTTGATAC----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29512156 186 - 170955103 TAATAATTTACTTAGTTATGTATGTAGTCTAGTATCATTGAGCAGATGATACTTTCATGCATTTTAGAAAATAAAACATATGAAAGCTATATGATGGAATATTTTTCTCATATTGATGTGGCAAACATTTATTTACCACATCAATTCATTTCCTCCAAATAAAAACTGATACTAGTTTCTTGATAC----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2498650 186 -   2996164 TAATAATTTACTTAGTTATGTATGTAGTCTAGTATCATTGAGCAGATGATACTTTCATGCATTTTAGAAAATAAAACATATGAAAGCTATATGATGGAATATTTTTCTCATATTGATGTGGCAAACATTTATTTACCACATCAATTCATTTCCTTCAAATAAAAACTGATACTAGTTTCTTGATAC----
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28755479 186 -  71996105 TAATAATTTACTTAGTTATGTGTGTAGTCTAGTATCATTGAGCAGATGATACTTTCATGCATTTTAGAAAATAAAACATGTGAAAGCTATATGATGGAATATTTTTCTCATATTGATGTGGCAAACATTTATTTACCACATGAATTCATTTCCTCCAAATAAAAACTGATACTAGTTTCTTGATAC----
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2399075 186 -   3067355 TAATAATTTACTTAGTTATATATGTAGTCTAGTATCATTGAGCAGATGATACTTTCATGCATTTTAGAAAATAAAACATATGAAAGCTATATGATGGGATATTTTTCTCATATTGATGTGGCAAACATTTATTTACCACATCAATTCATTTCCTCCAGATAAAAACTGATACTAGTTTCTTGATAC----
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1992476 170 -   2232465 taggatttcatttttttatggata-aataatgttctattgtgtatatg----taccacatATTGTAGAAAATAAAATCTATGAAAGTTATATGATGAACTATCTTCCTTTT---------------ATCCCTTTACCGCATCTATCCATTTTTCCCAAATAGATGCTGttatttatttataaattaaaag
i otoGar3.GL873742         I 978 C 0
e proCoq1.NW_012152574v1     358716 834 +    730504 I
e canFam3.chr35            26162894   0 +  26524999 C
e manLeu1.NW_012099655v1     227540 1548 -    352859 I
e cerAty1.NW_012002711v1     243383 1559 +    766320 I

a score=84766.000000
s hg38.chr6_GL000254v2_alt   608207 14 +   4827813 AGAAAAAGCAGAGG
s panTro5.chr6             29580247 14 + 175400573 AGAAAAAGCAGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29818480 14 + 173848474 AGAAAAAGCAGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5621323 14 +   6154872 AGAAAAAGCAGAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29849369 14 + 172585720 AGAAAAAGCAGAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29512342 14 - 170955103 AGAAAAAGCAGAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2498836 14 -   2996164 AGAAAAAGCAGAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     244942 14 +    766320 aGAAAAAGCAGAGG
i cerAty1.NW_012002711v1   I 1559 C 0
s chlSab2.chr17            28755665 14 -  71996105 AGAAAAAGCAGAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     229088 14 -    352859 agaaaaaaCAGAGG
i manLeu1.NW_012099655v1   I 1548 C 0
s colAng1.NW_012115566v1    2399261 14 -   3067355 AGAAAAAGCAGAGG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1992646 14 -   2232465 aaaaaaaGCAGAgg
i otoGar3.GL873742         C 0 I 256
e proCoq1.NW_012152574v1     358716 834 +    730504 I
e canFam3.chr35            26162894  0 +  26524999 C

a score=1999307.000000
s hg38.chr6_GL000254v2_alt   608221 416 +   4827813 ACTTGGATAGAGGGAATAACAGTCACTAATTTGACTGTACCtgtattagtccattctcacactgctatgaagaaaaataccccaggctggataatttataaagaaaagaggtctaatgaacgcatggttctgcattgctggagaggcctcaggaaacttacaatcgtggcagaaggtgagggagaagcaaagacacgtcttacagggtggcaggcaagagagcttgtgcaagtgtagaaaaaactaccagtcataaaaacatcagatcttgtgagaatccactcactgtcatgagaacagaatggggaaaccacccccataatccaatcacttcccaccaggtctcttccacaacacctggggattacaattcaatgtggatttgagtggggacacaaagcctaacaatattaGTA
s panTro5.chr6             29580261 416 + 175400573 ACTTGGATAGAGGGAATAGCAGTCACTAATTTGACTGTACCtgtattagtccattctcacactgctatgaagaaaaataccccaggctggataatttataaagaaaagaggtctaatgaacacatggttctgcattgctggagaggcctcaggaaacttacaatcatggcagaaggtgagggagaagcaaagacacgtcttacagggtggcaggcaagagagcttgtgcaagtgtagaaaaaactaccagtcataaaaacatcagatcttgtgagaatccactcactgtcatgagaacagaatggggaaaccacccccataatccaatcacttcccaccaggtctcttccacaacacctggggattacaattcaaggtggatttgagtggggacacaaagcctaacaatattaGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29818494 416 + 173848474 ACTTGGATAGAGGGAATAGCAGTCACTAATTTGACTGTACCtgtattagtccattctcacactgctatgaagaaaaataccccaggctggataatttataaagaaaagaggtctaatgaacacatggttctgcattgctggagaggcctcaggaaacttacaatcatggcagaaggtgagggagaagcaaagacatgtcttacagggtggcaggcaagagagcttgtgcaagtgtagaaaaaactaccagtcataaaaacatcagatcttgtgagaatccactcactgtcatgagaacagaatggggaaaccacccccataatccaatcacttcccaccaggtctcttccacaacacctggggattacaattcaaggtggatttgagtggggacacaaagcctaacaatattaGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5621337 416 +   6154872 ACTTGGATAGAGGGAATAACAGTCACTAATTTGACTGTACCtgtattagtccattctcacactgctatgaagaaaaataccccaggctggataatttataaagaaaagaggtctaatgaacgcacggttctgcattgctggagaggcctcaggaaacttacaatcatggcagaaggtgagggagaagcaaagacatgtcttacagggtggcaggcaagagagcctgtgcaagtgtagaaaaaactaccagtcataaaaacatcagatcttgtgagaatccactcactgtcatgagaacagaatggggaaaccacccccataatccaatcacttcccaccaggtctcttccacaacacctggggattacaattcaaggtggatttgagtggggacacaaagcctaacaatattaGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29849383 416 + 172585720 ACCTGGAGGGAGACAATAATAGTCACTAATTTGACTGTGCCtgtattagtccattctcacactgctatgaagaaaaataccccagactggataatttataaagaaaagaggtctaatgaatgcacaattctgcattactggagaggcctcaggaaacttacaatcatggcagaaggtgaaggagaagcaaagacacatcttacagagtggcaggcaagagagcttgtgcaagtgcagaaaaaactaccagttataaaaacatcaggtcttgtgagaatccacaccctgtcatgagaacagaatgggtaaaccacccccataatccaatcacttcccaccagctctcttccacaacacctggggattacaattcaaggtggatttgaatggggacacaaagcctaacaatattaGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29512356 416 - 170955103 ACCTGGAGGGAGACAATAATAGTCACTAATTTGACTGTGCCtgtattagtccattctcacactgctatgaagaaaaataccccagactggataatttataaagaaaagaggtctaatgaatgcacaattctgcattactggagaggcctcaggaaacttacaatcatggcagaaggtgaaggagaagcaaagacacatcttacagagtggcaggcaagagagcttgtgcaagtgcagaaaaaactaccagttataaaaacatcaggccttgtgagaatccacaccctgtcatgagaacagaatgggtaaaccacccccataatccaatcacttcccaccagctctcttccacaacacctggggattacaattcaaggtggatttgaatggggacacaaagcctaacaatattaGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2498850 416 -   2996164 ACCTGGAGGGAGACAATAATAGTCACTAATTTGACTGTGCCtgtattagtccattctcacactgctatgaagaaaaataccccagactggataatttataaagaaaagaggtctaatgaatgcacaattctgcattactggagaggcctcaggaaacttacaatcatggcagaaggtgaaggagaagcaaagacacatcttacagagtggcaggcaagagagcttgtgcaagtgcagaaaaaactaccagttataaaaacatcaggtcttgtgagaatccacaccctgtcatgagaacagaatgggtaaaccacccccataatccaatcacttcccaccagctctcttccacaacacctggggattacaattcaaggtggatttgaatggggacacaaagcctaacaatattaGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     244956 416 +    766320 ACTTGGAGGGAGAGAATAACAGTCACTAATTTGACTGTACCtgtattagtccattctcacactgctatgaagaaaaataccccagactggataatttataaagaaaagaggtctaatgaatgcacagttctgcattgctggagaggcctcaggaaaattacaatcatggcagaaggtgaaggaaaagcaaagacacatcttacagagtggcaggcaagagagcttgtgcaagtacagaaaaaactaccagttataaaagcatcagatcttgtgagaatccacaccctgtcatgagaacagaatgggtaaaccacccccataatccaatcacttcccaccaggtctcttccacaacacctggggattacaattcaatgtggatttgagtggggacacaaagcctaacaatattaGTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28755679 416 -  71996105 ACTTGGAGGGAGAGAATAATAGTCACTAATTTGACTGTGCCtgtattagtctattctcacactgctatgaagaaaaatacccgagactggataatttataaagaaaagaggtctaatgaatgcacaattctgcattaccggagaggcctcaggaaacttaccatcatggcagaaggtgaaggagaagcaaagacacatcttacagagtggcaggcaagacagcttgtgcaagtgcagaaaaaactaccagttataaaaacatcaggtcttgtgagaatccacaccctgtcacgagaacagaatgggtaaaccatccccataatccaatcacttcccaccaggtctcttccacaacacctggggattacaattcaaggtggatttgagtggggacacaaagcctaacaatattaGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     229102 416 -    352859 ACTTGGAGGGAGAGAATAACAGTCACTAATTTGACTGTACCtgtattagtccattctcacactgctatgaagaaaaataccccagactggataatttataaagaaaagaggtctaatgaatgcacagttctgcattgctggagaggcctcaggaaaattacaatcatggcagaaggtgaaggaaaagcaaagacacatcttacagagtggcaggcaagagagcttgtgcaagtacagaaaaaactaccagttataaaagcatcagatcttgtgagaatccacaccctgtcatgagaacagaatgggtaaaccacccccataatccaatcacttcccaccaggtgtcttccacaacacctggggattacaattcaatgtggatttgagtggggacacaaagcctaacaatattaGTG
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2399275 404 -   3067355 ACTTGGAGGGACAGAATAACAGTCACTAATTTGACTGTGCCtgtattagtccattctcacactgctatgaggaaaaataccccagactggataatttataaagaaaagaggtctaatgaatgcatagttctgcattgctggagaggcctcaggaaacttacaatcatggcagaaggtgaaggagaagcaaacacacatcttacagagtggcaggcaagagagcttgtgcaagtgcagaaaaaactac------------catcagttcttgtgagaatccacgccctgtcgtgagaacagaatgggtaaactacccccataatccaatcacttcccaccaggtctcttccacaacacctggggattacaattcaaggtggatttgagtagggacccaaagcctaacaatattaGTG
i colAng1.NW_012115566v1   C 0 C 0
e proCoq1.NW_012152574v1     358716 834 +    730504 I
e canFam3.chr35            26162894   0 +  26524999 C
e otoGar3.GL873742          1992660 256 -   2232465 I

a score=333492.000000
s hg38.chr6_GL000254v2_alt   608637 65 +   4827813 CCAAATGCAATCCTAGATGAACTC----------CTAGAGCAGGAAATTTTAAATATAAGTTTTGAATGGAAAGA
s panTro5.chr6             29580677 65 + 175400573 CCAAATGCAATCTTAGATGAACTC----------CTAGAGCAGGAAATTTTAAATATAAGTTTTGAATGGAAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29818910 65 + 173848474 CCAAATGCAATCTTAGATGAACTC----------CTAGAGCAGGAAATTTTAAATATAAGTTTTGAATGGAAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5621753 65 +   6154872 CCAAATGCAATCCTAGATGAATTC----------CTAGAGCAGGAAATTTTAAATATAAGTTTTGAATGGAAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29849799 65 + 172585720 CCAAATGCAATTCTAGATGAATTC----------CTAGAGCAGGAAATTTTAAATATAAGTTTTGAATGGAAAGA
i rheMac8.chr4             C 0 I 2
s macFas5.chr4             29512772 65 - 170955103 CCAAATGCAATCCTAGATGAATTC----------CTAGAGCAGGAAATTTTAAATATAAGTTTTGAATGGAAAGA
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1    2499266 65 -   2996164 CCAAATGCAATCCTAGATGAATTC----------CTAGAGCAGGAAATTTTAAATATAAATTTTGAATGGAAAGA
i macNem1.NW_012011356v1   C 0 I 2
s cerAty1.NW_012002711v1     245372 75 +    766320 CCAAATGCAATCCTAGATGAATTCTAGGAAATTTCTAGAGCAGGAAATTTTAAATATAAGTTTTGAATGGAAAGA
i cerAty1.NW_012002711v1   C 0 I 2
s chlSab2.chr17            28756095 65 -  71996105 CCAAATGCAATCCTAGATGAATTC----------CCAGAGCAGGAAATTTTAAATATAAGTTTTGAATGGAAAGA
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012099655v1     229518 75 -    352859 CCAAATGCAATCCTAGATGAATTCTAGGAAATTTCTAGAGCAGGAAATTTTAAATATAAGTTTTGAATGGAAAGA
i manLeu1.NW_012099655v1   C 0 I 2
s colAng1.NW_012115566v1    2399679 65 -   3067355 CCAAATGCAATCCTGGATGAATTC----------CTAGAGCAGGAAATTTTAAATATAAGTTTTGAATGGAAATA
i colAng1.NW_012115566v1   C 0 I 2
s otoGar3.GL873742          1992916 55 -   2232465 CTAAGTGTAATCGTAGAAGAGTTT----------CTATAGCAGTG----------ATGAGTTTAGAATAAAAAGA
i otoGar3.GL873742         I 256 I 2
e proCoq1.NW_012152574v1     358716 834 +    730504 I
e canFam3.chr35            26162894  0 +  26524999 C

a score=476346.000000
s hg38.chr6_GL000254v2_alt   608702 79 +   4827813 CAGCTGTAGAGGAAGAATATGATTTCTCAAAGAACTATTATAAGTGTCCTGTTCTTGTCTAAAGTAA-TTCTTCCCTAAC
s panTro5.chr6             29580742 79 + 175400573 CAGCTATAGAGGAAGAATATGATTTCTCAAAGAACTATTATAAGTGTCCTGTTCTTGTCTAAAGTAA-TTCTTCCCTAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29818975 79 + 173848474 CAGCTATAGAGGAAGAATATGATTTCTCAAAGAACTATTATAAGTGTCCTGTTCTTGTCTAAAGTAA-TTCTTCCCTAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5621818 79 +   6154872 CAGCTATAGAGGAAGAATATGATTTCTCAAAGAACTATTATAAGTGTCGTGTTCTTGTCTAAAGTAA-TTCTTCCCTAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29849866 79 + 172585720 CAGCTATAGAGGAAGAATATGATTTCTCAAAGAACTATTATAAGTATCCTGTTCTTGTCTAAAAAAA-TTCTTCCCTAGC
i rheMac8.chr4             I 2 C 0
s macFas5.chr4             29512839 79 - 170955103 CAGCTATAGAGGAAGAATATGATTTCTCAAAGAACTATTATAAGTATCCTGTTCTTGTCTAAAAAAA-TTCTTCCCTAGC
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1    2499333 79 -   2996164 CAGCTATAGAGGAAGAATATGATTTCTCAAAGAACTATTATAAGTATCCTGTTCTTGTCTAAAAAAA-TTCTTCCCTAGC
i macNem1.NW_012011356v1   I 2 C 0
s cerAty1.NW_012002711v1     245449 79 +    766320 TAGCTATAGAGGAAGAATATGATTTCTCAAAGAACTATTATAAGTATCCTGTTCTTGTCTAAAAAAA-TTCTTCCCTAGC
i cerAty1.NW_012002711v1   I 2 C 0
s chlSab2.chr17            28756162 79 -  71996105 CAGCTATAGAGGAAGAATATGATTTCTCAAAGAACTATTATGAGTATCCTGTTCTTGTCTAAAAAAA-TTCTTCCCTAGC
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012099655v1     229595 79 -    352859 CAGCTATAGAGGAAGAATATGATTTCTCAAAGAACTATTATAAGTATCCTGTTCTTGTCTAAAAAAA-TTCTTCCCTAGC
i manLeu1.NW_012099655v1   I 2 C 0
s colAng1.NW_012115566v1    2399746 79 -   3067355 CAGCTATAGAGAAAGAATATGACTTCTCAAAGAACTATTATAAGTGTCCTGTTCTTGTCTAAAAAAA-TTCTTCCCTAGC
i colAng1.NW_012115566v1   I 2 C 0
s proCoq1.NW_012152574v1     359550 80 +    730504 CAGCTATAGAGGAAGGAAATAATTTCTCACAGAATGGTTATCAGTGTCCTATTTTCATCTAAAGTTATTTTTTCCCTAGC
i proCoq1.NW_012152574v1   I 834 C 0
s otoGar3.GL873742          1992973 77 -   2232465 CAGTTATAGAGAAAGGAAATGATGTCT-ACAGAAC-ATAACCAGCATCTTGTTCTTATCTAAAATTA-TTTTTCCCTAGC
i otoGar3.GL873742         I 2 I 319
e canFam3.chr35            26162894  0 +  26524999 C

a score=-55.000000
s hg38.chr6_GL000254v2_alt   608781 1 +   4827813 -A
s panTro5.chr6             29580821 1 + 175400573 -A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29819054 1 + 173848474 -A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5621897 1 +   6154872 -A
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29849945 1 + 172585720 -A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29512918 1 - 170955103 -A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2499412 1 -   2996164 -A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     245528 1 +    766320 -A
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28756241 1 -  71996105 -A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     229674 1 -    352859 -A
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2399825 1 -   3067355 -A
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     359630 1 +    730504 T-
i proCoq1.NW_012152574v1   C 0 C 0
e canFam3.chr35            26162894 0 +  26524999 C
e otoGar3.GL873742          1993050 319 -   2232465 I

a score=258208.000000
s hg38.chr6_GL000254v2_alt   608782 38 +   4827813 CAGAATCTCACTTCCTATAGGTTCTTAAGCATGATGAT
s panTro5.chr6             29580822 38 + 175400573 CAGAATCTCACTTCCTATAGGTTCTTAAGCATGATGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29819055 38 + 173848474 CAGAATCTCACTTCCTATAGGTTCTTAAGCATGATGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5621898 38 +   6154872 CAGAATCTCACTTCCTATAGGTTCTTAAGCATGATGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29849946 38 + 172585720 CAGAATCTCACTTCCTATAGGTTCTTAAGCATGATGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29512919 38 - 170955103 CAGAATCTCACTTCCTATAGGTTCTTAAGCATGATGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2499413 38 -   2996164 CAGAATCTCACTTCCTATAGGTTCTTAAGCATGATGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     245529 38 +    766320 CAGAATCTCACTTCCTATAGGCTCTTAAGCATGATGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28756242 38 -  71996105 CAGAATCTCACTTCCTATAGGTTCTTAAGCATGATGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     229675 38 -    352859 CAGAATCTCACTTCCTATAGGCTCTTTAGCATGATGAT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2399826 38 -   3067355 CAGAATCTCACTTCCTATAGGTTCTTAAGCATGATGAT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     359631 38 +    730504 CAGAATCTTACTTCCTGTAGGTTCTTAAGTGTGATGAT
i proCoq1.NW_012152574v1   C 0 I 541
s otoGar3.GL873742          1993369 38 -   2232465 cAGAATCTTACCTCTTATAAGTTCTTAAGTGTAATGAT
i otoGar3.GL873742         I 319 C 0
e canFam3.chr35            26162894  0 +  26524999 C

a score=207106.000000
s hg38.chr6_GL000254v2_alt   608820 39 +   4827813 ACATGTTTTGTGGCTGAAATAACCTAATGAAATATT-CCA
s panTro5.chr6             29580860 39 + 175400573 ACATGTTTTATGGCTGAAATAACCTAATGAAATATT-CCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29819093 39 + 173848474 ACATGTTTTATGGCTGAAATAACCTAATGAAATATT-CCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5621936 39 +   6154872 ACATGTTTTATGGCTGAAATAACCTAATGAAATATT-CCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29849984 39 + 172585720 ACATGTTTTACGGCTGAAATAACCTAATGAAATATT-CCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29512957 39 - 170955103 ACATGTTTTATGGCTGAAATAACCTAATGAAATATT-CCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2499451 39 -   2996164 ACATGTTTTATGGCTGAAATAACCTAATGAAATATT-CCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     245567 39 +    766320 ACATGTTTTGTGGCTGAAATAACCTAATGAAATATT-CCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28756280 39 -  71996105 ACATGTTTTATGGCTGAAATAACCTAATGAAATATT-CCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     229713 39 -    352859 ACATGTTTTGTGGCTGAAATAACCTAATGAAATATT-CCA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2399864 39 -   3067355 ACATGTTTTATGGCTGAAATAACCTAATGAAATATT-CCA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1993407 40 -   2232465 TTATGTTCATGAGCAAGAATAATATAATGAAATATTGCAA
i otoGar3.GL873742         C 0 C 0
e proCoq1.NW_012152574v1     359669 541 +    730504 I
e canFam3.chr35            26162894  0 +  26524999 C

a score=217550.000000
s hg38.chr6_GL000254v2_alt   608859 41 +   4827813 ATACACAATTTTATTACA--------TATATAT----------GTTACTAATTTGTACA
s panTro5.chr6             29580899 41 + 175400573 ATACACAGTTTTATTACA--------TATATAT----------GTTACTAATTTGTACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29819132 41 + 173848474 ATACACAGTTTTATTACA--------TATATAT----------GTTACTAATTTGTACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5621975 41 +   6154872 ATACACAATTTTATTACA--------TATATAT----------GTTAGTAATTTGTACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29850023 43 + 172585720 ATACACAATTTTATTACATG------TATATAT----------GCTAGTAATTTGTACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29512996 43 - 170955103 ATACACAATTTTATTACATG------TATATAT----------GCTAGTAATTTGTACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2499490 43 -   2996164 ATACACAATTTTATTACATG------TATATAT----------GCTAGTAATTTGTACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     245606 43 +    766320 ATACACAATTTTATTACATG------TATATAT----------GCTAGTAATTTGTACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28756319 43 -  71996105 ATACACAATTTTATTACATG------TATATAT----------GCTAGTAATTTGTACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     229752 43 -    352859 GTACACAATTTTATTACATG------TATATAT----------GCTAGTAATTTGTACA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2399903 43 -   3067355 ATACACAATTTTATTACATG------TATATAT----------GCTAGTAATTTGTATA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1993447 49 -   2232465 ACACAAAATTTTATTACATGTATCTCCATGTGT----------GTTTGTAAACTGTTCC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           444781 53 +   1532071 atataaaaatttattatatg------tatctatatgtgcataggtttataatctgcata
i dasNov3.JH570741         N 0 C 0
e proCoq1.NW_012152574v1     359669 541 +    730504 I
e canFam3.chr35            26162894  0 +  26524999 C

a score=2084703.000000
s hg38.chr6_GL000254v2_alt   608900 326 +   4827813 TAGCTTTATAAGTATATATACAAGTATACATAAGTTTATAATATGCATCTAGCTTTTCAAAACTACATGAAAAGAATCTATGAAAGATATAGTAACAAAAATCAAACATAAGGCTATGTATACAACAGTAAATTGAATTCATAGATGACAAATTTATACTATAATTCACAAATAGCAATAAATAGTAGAAAAGCATGATCTCATATTATAAAACTGAACAAAATTAATTTTAAATGCTACAACATAAATATCAAGTGGAAAAAAGCTTCCGTTTTACAAGATGAGGCACATTCTTTACAGTTGTATGTTACTTGGATTAGTATTTT
s panTro5.chr6             29580940 326 + 175400573 TAGCTTTATAAGTATATATACAAGTATACATAAGTTTATAATATGCATCTAGCTTTTCAAAACTACATGAAAAGAATCTATGAATGATATAGTAACAAAAATCAAACATAAGGCTATGTATACAACAGTAAATTGAATTCATAGATGACAAATTTATACTATAATTCACAAATAGCAATAAATAGTAGAAAAGCATGATCTCATATTATAAAACTGAACAAAATTAATTTTAAATGCTACAACATAAATATCAAGTGGAAAAAAGCTTCCATTTTACAAGATGAGGCACATTCTTTATAGTTGTATGTTACTTGGATTAGTATTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29819173 326 + 173848474 TAGCTTTATAAGTATATATACAAGTATACATAAGTTTATAATATGCATCTAGCTTTTCAAAACTACATGAAAAGAATCTATGAATGATATAGTAACAAAAATCAAACATAAGGCTATGTATACAACAGTAAATTGAATTCATAGATGACAAATTTATACTATAATTCACAAATAGCAATAAATAGTAGAAAAGCATGATCTCATATTATAAAACTGAACAAAATTAATTTTAAATGCTACAACATAAATATCAAGTGGAAAAAAGCTTCCATTTTACAAGATGAGGCACATTCTTTATAGTTGTATGTTACTTGGATTAGTATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5622016 326 +   6154872 TAGCTTTATAAGTATATATACAAGTATACATAAGTTTATAATATGCATCTAGCTTTTCAAAACTACATGAAAAGAATCTATGAATGATATAGTAACAAAAATCAAACATAAGGCTATGTATACAACAGTAAATTGAATTCATAGATGACAAATTTATACTATAATTCACAAATAGCAATAAATAGTAGAAAAGCATGATCTTATATTATGAAACTGAACAAAATTAATTTTAAATGTTACAACATAAATATCAAGTGGAAAAAAGCTTCCATTTTACAAGATGAGGCACATTCTTTACAGTTGTATGTTACTTGGATTAGTATTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29850066 321 + 172585720 TAGCTTTATAAGTACATATACAAGTATATATAAGTTTATAATATGCATCTAGCTTTTCAAAGCTACATGAAAAGAATCTATGAATGATATAGTAACAAAGATCAAACATAAGGCTATATATACAACAGTAAATTGAATTCATAGATAATAAACTTATACTATAATTCACAAACAGCAATAAATTGTAGAAAAGCATGATCTTATA-----AAACTGAACAAAATTAATTTTAAATGCTACAACATAAATATCAAGTGGAAAAAAGCTTCCATTTTACAAGATGAGGCACATTCTTTACAGTTGTATGTTACTTGTATTATTATTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29513039 321 - 170955103 TAGCTTTATAAGTACATATACAAGTATACATAAGTTTATAATATGCATCTAGCTTTTCAAAGCTACATGAAAAGAATCTATGAATGATATAGTAACAAAGATCAAACATAAGGCTATATATACAACAGTAAATTGAATTCATAGATAATAAACTTATACTATAATTCACAAACAGCAATAAATTGTAGAAAAGCATGATCTTATA-----AAACTGAACAAAATTAATTTTAAATGCTACAACATAAATATCAAGTGGAAAAAAGCTTCCATTTTACAAGATGAGGCACATTCTTTACAGTTGTATGTTACTTGTATTATTATTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2499533 321 -   2996164 TAGCTTTATAAGTACATATACAAGTATACATAAGTTTATAATATGCATCTAGCTTTTCAAAGCTACATGAAAAGAATCTATGAATGATATAGTAACAAAGATCAAACATAAGGCTATATATACAACAGTAAATTGAATTCATAGATAATAAACTTATACTATAATTCACAAACAGCAATAAATTGTAGAAAAGCATGATCTTATA-----AAACTGAACAAAATTAATTTTAAATGCTACAACATAAATATCAAGTGGAAAAAAGCTTCCATTTTACAAGATGAGGCACATTCTTTACAGTTGTATGTTACTTGTATTATTATTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     245649 326 +    766320 TAGCTTTATAAGTACATATACAAGTATACATAAGTTTATAATATGCATCTAGTTTTTCAAAGCTACATGAAAAGAATCTATGAATGATATAGTAACAAAGATCAAACATAAGGCTATATATACAACAGTAAATTGAATTCATAGATGATAAATTTATACCATAATTCACAAATAGCAATAAATTGTAGAAAAGCATGATCTTATATTATGAAACTGAACAAAATTAATTTTAAATGCTACAACATAAATATCAAGTGGAAAAAAGCTTCCATTTTACAAGATGAGGCACATTCTTTACAGTTGTATGTTACTTGTATTATTATTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28756362 321 -  71996105 TAGCTTTATAAGTACATATACAAGTATACATAAGTTTATAATATGCATCTAGCTTTTCAAAGCTACATGAAAAGAATCTATGAATGATATAGTAACAAAGATCAAACATAAGGCTATATATACAACAGTAAATTGAATTCATAGATGATAAATTTATACTATAATTCACAAATAGCAATAAATTGTAGAAAAGCATGATCTTATA-----AAACTGAACAAAATTAATTTTAAATGCTACAACATAAATATCAAGTGGAAAAAAGCTTCCATTTTACAAGATGAGGCACATTCTTTACAGTTGTATGTTACTTGTATTATTATTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     229795 326 -    352859 TAGCTTTATAAGTACATATACAAGTATACATAAGTTTATAATATGCATCTAGTTTTTCAAAGCTACATGAAAAGAATCTATGAATGATATAGTAACAAAGATCAAACATAAGGCTATATATACAACAGTAAATTGAATTCATAGATGATAAATTTATACCATAATTCACAAATAGCAATAAATTGTAGAAAAGCATGATCTTATATTATGAAACTGAACAAAATTAATTTTAAATGCTACAACATAAATATCAAGTGGAAAAAAGCTTCCATTTTACAAGATGAGGCACATTCTTTACAGTTGTATGTTACTTGTATTATTATTTT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2399946 321 -   3067355 TAGCTTTATAAGTACATATACAAGTATACATAAGTTTATAATATGCATCTAGCTTTTCAAAGCTACATGAAAAGAATCTATGAATGATATAGTAACAAAGATCAAACATAAGGCTATATATACAACAGTAAATGGAATTAATAGATGATAAATTTATACTATAATTCACAAATAGCAATAAATTGTAGAAAAGCATGATCTTATG-----AAACTGAACAAAATTAATTTTAAATGCTACAACATAAATATCAAGTGGAAAAAAGCTTCCATTTTACAAGATGAGGCACATTCTTTACAGTTGTATGTTACTTGTATTATTATTTT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     360210 321 +    730504 TAGCTTTCTAAGTTCACATACAAGTATACATAAATGTATAATATACATCTAGCTTGTCAAAGTTAGGTGAAAAGAATTTATGGACAATCTAGTAACAAATATCAGATATATGGCTGTATACTCAACAATAAATTGTGTTCATAGGTAACAAATCTATACCATAATTTATGAATAGCAGCAAATTGTAGAAAAGTGTG---TTACATTATAAAACCTATCAAAATT-ATTTAAGATACTGCAATGTAAATATCAAGTAAAAAAAAGCTTCCATGCTGTAAGATGAGGTACAATTTTTACAGTTATATGTTACCTGAATTATTA-TTC
i proCoq1.NW_012152574v1   I 541 C 0
s otoGar3.GL873742          1993496 284 -   2232465 TAGCTTTATAAATTCATACAGAAGTATACATAAATTTATAATATACATCTAGCTTTTCAAAGTTAGATGAAAAGAATTTATGGACAATATGCTAACAAATACCAGAGATA--------------------------ATTTATAGGTGACAGATTTATACTATAA-TAATGAACAGCAGCAAATTGTAGAAAAACATG---TTACATTATACAATC---------T-ATTTTAAATGGTGTAATGTAAATATCAGGTGGGAAAAA-CTTCCATGTTGCAAGATAAGGCATGTTTTTTGTAGTTAAATGTTACCTGAATTATTA-ACC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           444834 282 +   1532071 tagatttataagtacataagaaattatatgtaaatttataatat-tgtataGCTTTTCAAAAGTAGAT-AAGAAAATTTTGGGGTCATCTAGTAATAAATATCTGA-------CTGTATACCCGACAGTAAA-----------------AATTCTATACTATGTTTT---------------CTGTAGAAAAGCATGAATTTAAATTATAAAACTGAACAAAATT-ATTTAAAATGCTACAATATAAATATCACATGGAATAAAGTTCCCATGTTGTAAGGTGAGGCACATTTTTTACAGTCATATAGTAC-TGGATTATTATTT-
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26162894   0 +  26524999 C

a score=1129958.000000
s hg38.chr6_GL000254v2_alt   609226 176 +   4827813 AATTTGTAATTTAAATAGAACTTTCAATATGGTAGACTACTGTAATGATGATCCAGTATATCAGAATAGTGAATTAAATAAAACAAGAGAATAAGTGAATGGGTGGCTATGTGAATA-TATACTGTACATACATAGTCCCCAGGGTGAATGAGAACTGGAACTTTGCTAATACCAAc
s panTro5.chr6             29581266 176 + 175400573 AATTTGTAATTTAAATAGAACTTTCAATATGGTAGACTACTATAATGATGATCCAGTATATCAGAATAGTGAATTAAATAAAACAAGAGAATAAGTGAATGGGTGGCTATGTGAATA-TATACTGTACATACATAGTCCCCAGGGTGAATGAGAACTGGAACTTTGCTAATACCAAc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29819499 176 + 173848474 AATTTGTAATTTAAATAGAACTTTCAATATGGTAGACTACTATAATGATGATCCAGTATATCAGAATAGTGAATTAAATAAAACAAGAGAATAAGTGAATGGGTGGCTATGTGAATA-TATACTGTACATACATAGTCCCCAGGGTGAATGAGAACTGGAACTTTGCTAATACCAAc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5622342 176 +   6154872 AATTTGTAATTTAAATAGAACTTTCAATATGGTAGACTACTATAATGATGATCCAGTATATCAGAATAGTGAATTAAATAAAACAAGAGAATAAGTGAATGGGTGGCTATGTGAATA-TATACTGTACATGCATAGTCCCCAGGGTGAATGAGAACTGGAACTTTGCTAATACCAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29850387 176 + 172585720 AATATGTAATTTAAATAGAACTTTCAATATGGTAGACTACTATAATAGTGATCCAGTATATCAAAATAGTGAATTAAATAAAACAAGAGACTAAGTAAATGGGTGGCTATGTGAATA-TATACTGTACATACATAGTCCCTAGGGTGAATGAGAACTGGAACTTTGCTAATACCAAc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29513360 176 - 170955103 AATATGTAATTTAAATAGAACTTTCAATATGGTAGACTACTATAATAGTGATCCAGTATATCAAAATAGTGAATTAAATAAAACAAGAGACTAAGTAAATGGGTGGCTATGTGAATA-TATACTGTACATACATAGTCCCTAGGGTGAATGAGAACTGGAACTTTGCTAATACCAAc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2499854 176 -   2996164 AATATGTAATTTAAATAGAACTTTCAATATGGTAGACTACTATAATAGTGATCCAGTATATCAAAATAGTGAATTAAATAAAACAAGAGACTAAGTAAATGGGTGGCTATGTGAATA-TATACTGTACATACATAGTCCCTAGGGTGAATGAGAACTGGAACTTTGCTAATACCAAc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     245975 176 +    766320 AATATGTAATTTAAATAGAACTTTCAATATGGTAGACTACTATAATAGTGATCCAGTATATCAAAATAGCGAATTAAATAAAACAAGAGACTAAGTGAATGGGTGGCTATGTGAATA-TATACTGTACATACATAGTCCCCAGGGTGAATGAGAACTGGAACTTTGCTAATACCAAc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28756683 176 -  71996105 AATATGTAATTTAAATAGAACTTTCAATATGGTAGACTACTGTAATAATGATCCAGTATATCAAAATAGTGAATTAAATAAAACAAGAGACTAAGTGAATGGGTGACTATGTGAATA-TATACTGTACATACATAGTCCCCAGGGTGAATGAGAACTAGAACTTTGCTAATACCAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     230121 176 -    352859 AATATGTAATTTAAATAGAACTTTCAATATGGTAGACTACTATGATAGTGATCCAGTATATCAAAATAACGAATTAAATAAAACAAGAGACTAAGTGAATGGGTGGCTATGTGAATA-TATACTGTACATACATAGTCCCCAGGGTGAATGAGAACTGGAACTTTGCTAATATCAAc
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2400267 176 -   3067355 AATATGTAATTTAAATAGAACTTTCAATATGGTAGACTACTATAATAATGATCCAGTATATCAAAATAGTGAATTAAATAAAACAAGAGACTAAGTGAATGGGTGGCTATGTGAATA-TATACTGTACATACATAGTCCCCAGGGTGAATGAGAACTGGAACTTTGCTAATACCAAC
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     360531 176 +    730504 AATTTGTAGTTTAATTAGAACTTTTAATGTGATTAACTATTAAAACAATGATATAGTATATGAGAATAATTTATTGAATAAAATAAGTGAATAAGTGATTGGATGGCTGTGTGAATA-TATACCATGTATACATATTTCTCAGAATGAATAAGAACTGGAATTTTGTGAATACCAAC
i proCoq1.NW_012152574v1   C 0 I 97
s otoGar3.GL873742          1993780 167 -   2232465 AATTTGTAGTTCAATTAGAACC-------TGAAT-ACTATTAAAACAATGATTTAGTGTATCAGTATAAGTAATTGAATAAAATAA--CAATAAATGACTGGATGGCTGCATGAGTACTATACCATGTATGAATATTTCTCAGAATGAATAAAAACTGAAATGTTACTAATACCAAA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35            26162894 129 +  26524999 AATTGGTGGTTTAATTAGAGCTTTGAATCTGGAAGATCATTGTCACAAGGGTCTAGTTTATTATAATAACTAATTGAATGAAATAAGAGAATAAGTGAGTGAATGTTTCTGTGGATA-CA--------------------CAGAGTTGAT---------------------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH570741           445116 105 +   1532071 GATTTGTGGCTTAATTAGAACTTTGAGTATGGTAGGCTATTTTAACTATCATCTAGTATATCA-------GAATTGAAT---------GAATAACTGA-CGAATAGCTGGATGAATA-TACAT------------------------------------------------------
i dasNov3.JH570741         C 0 C 0

a score=44022.000000
s hg38.chr6_GL000254v2_alt   609402 9 +   4827813 tctctccct
s panTro5.chr6             29581442 9 + 175400573 tctctccct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29819675 9 + 173848474 tctctccct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5622518 9 +   6154872 TCTCTCCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29850563 9 + 172585720 tctctccct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29513536 9 - 170955103 tctctccct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2500030 9 -   2996164 tctctccct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     246151 9 +    766320 tctctccct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28756859 9 -  71996105 TCTCTCCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     230297 9 -    352859 tctctccct
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2400443 9 -   3067355 TTCctccct
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1993947 5 -   2232465 ----TGCGT
i otoGar3.GL873742         C 0 I 34
e dasNov3.JH570741           445221 0 +   1532071 C
e proCoq1.NW_012152574v1     360707 97 +    730504 I
e canFam3.chr35            26163023 0 +  26524999 C

a score=93709.000000
s hg38.chr6_GL000254v2_alt   609411 22 +   4827813 tgc-ctctctctctgccctctct
s panTro5.chr6             29581451 22 + 175400573 tgc-ctctctctctgccctctct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29819684 22 + 173848474 tgc-ctctctctctgccctctct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5622527 22 +   6154872 TGC-CTCTCTCTCTGCCCTCCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29850572 23 + 172585720 tgctctctccctctaccctctct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29513545 23 - 170955103 tgctctctccctctaccctctct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2500039 23 -   2996164 tgctctctccctctaccctctct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     246160 23 +    766320 agctctctccctctaccctctct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28756868 23 -  71996105 TGCTCTCTCTCTCTACCCTCTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     230306 23 -    352859 agctctctccctctaccctctct
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2400452 23 -   3067355 tgctctctctctctgccctctct
i colAng1.NW_012115566v1   C 0 C 0
e dasNov3.JH570741           445221  0 +   1532071 C
e proCoq1.NW_012152574v1     360707 97 +    730504 I
e canFam3.chr35            26163023  0 +  26524999 C
e otoGar3.GL873742          1993952 34 -   2232465 I

a score=155452.000000
s hg38.chr6_GL000254v2_alt   609433 30 +   4827813 ctATGTATATACATTTGTATTAACAAGAAC
s panTro5.chr6             29581473 30 + 175400573 ctATGTATATATATTTGTATTAACAAGAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29819706 30 + 173848474 ctATGTATATATATTTGTATTAACAAGAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5622549 30 +   6154872 CTATGTATATACATTTGTATTAACAAGAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29850595 30 + 172585720 ctATGTATATATATTTGTATTAACAAGAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29513568 30 - 170955103 ctATGTATATATATTTGTATTAACAAGAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2500062 30 -   2996164 ctATGTATATATATTTGTATTAACAAGAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     246183 30 +    766320 ctATGTATATATATTTGTATTAACAAGAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28756891 30 -  71996105 CTATGTATATATATTTGTATTAACAAGAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     230329 30 -    352859 ctATGTATATATATTTGTATTAACAAGAAC
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2400475 30 -   3067355 ctATGTACATATATTTGTATTAACAAGAAC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1993986 30 -   2232465 ATAGATACAGACGTAGATATAGATATGTGG
i otoGar3.GL873742         I 34 I 2
s canFam3.chr35            26163023 12 +  26524999 ------------------ATTAACAAGGAT
i canFam3.chr35            C 0 C 0
s dasNov3.JH570741           445221 19 +   1532071 -----------CAACCATATTAGCAAGGAT
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     360707 97 +    730504 I

a score=6519957.000000
s hg38.chr6_GL000254v2_alt   609463 934 +   4827813 CCAGTTCTCATTCATTCTGGGGTAAGGGGCTTTCAGAGAAAAGGTAAACACCCTTG-AGGCTTTCTGAAATGTCTTCTTTTTTTAATAGTAATGACCCTTTCTCC--TTTACAGTTGAGTGTGGTGCTTTGCATGAAGTCACCCATCTC--TTTCCCTAAGGAGGCCAACTTTGAAGGATAGACTTTGAAGAAAGTTTATCTCAGTGC--TGTTTGTTAAGTGGCTTACCCCAAGAGGCCTCTTGCAG---AAGTAA--TTGTTAAAACCATGAGGCACACCTGAGAGAAAGGCGCCAGGGACTACCTAACAAAGCTGGCACCTCTGGAGAC-ACTTTGGAAGTATTTAATACATATGCCCTGATGGAGCATCTTACTCTTCAAAGAAAACAGTTTTGAGGCACCTAAGCAATTATGTACTT-ATTGACTTTGCGAAAACATTTATAACATCTTAACAATACAATTATCTGTAAGCTTTCTAATGAGCCCCCAAGTGACCTACTAGTGGAACAAAAACTTTCTTGATAAGAGCCAGTTTCCAAGAGACCATTTTTAATTGTATGAAAACTGAAAAATGATGGTGTTAAGAAGCTGCTGTTAGCTCTGTGTAAACTGTGTGGACTCTTTGCCAGTACAGCCCTCAGTGAACACACATCTTTAATAGAAATTAGCAATTGCTATAACCTGTAGTCTTAGAA-GAAAATAAATACTGTAGAGG-CCTCCAAAGTTATTCTAGTTACCTACTCTCTATATTGGGAGACAGAATTCAAACTCCAAAATTTCAAATTCTTCTTTGTTTTATGTCTAAGTGGGTTAGAATAATCTAATAAAATACTCCCAATAAACAAA-TCAATCCTGCATTCTTTTTAAATGTTCTGTGAAAGCAATAAACCTTGTAGCTAATTTTcagtatgg-----catatacaccagttaacaatacatcttttaga
s panTro5.chr6             29581503 934 + 175400573 CCAGTTCTCATTCATTCTGGGGTAAGGGGCTTTCAGAGAAAAGGTAAACACCCTTG-AGGCTTTCTGAAATGTCTTCTTTTTTTAATAGTAAGGACCCTTTCTCC--TTTACAGTTGAGTGTGGTGCTTTGCATGAAGTCACCCATCTC--TTTCCCTAAGGAGGCCAACTTTGAAGGATAGACTTTGAAGAAAGTTTATCTCAGTGC--TGTTTGTTAAGTGGCTTACCCCAAGAGGCCTCTTGCAG---AAGTAA--TTGTTAAAACCATGAGGCACACCTGAGAGAAAGGCGCCAGGGACTACCTAACAAAGCTGGCACCTCTGGAGAC-ACTTTGGAAGTATTTAATACATATGCCCTGATGGAGCATCTTACTCTTCAAAGAAAACAGTTTTGAGGCACCTAAGCAATTATGTACTT-ATTGACTTTGCAAAAACATTTATAACATCTTAACAATACAATTATCTGTAAGCTTTCTAATGAGCCCCCAAGTGACCTACTAGTGGAACAAAAACTTTCTTGATAAGAGCCAGTTTCCAAGAGACCATTTTTAATTGTATGAAAACTGAAAAATGATGGTGTTAAGAAGCTGCTGTTAGCTCTGTGTAAACTGTGTGGACTCTTTGCCAGTACAGCCCTCAGTGAACACACATCTTTAATAGAAATTAGCAATTGCTATAACCTGTAGTCTTAGAA-GAAAATAAATACTGTAGAGG-CCTCCAAAGTTATTCTAGTTACCTACTCTCTATATTGGGAGACAGAATTCAAACTCCAAAATTTCAAATTCTTCTTTGTTTTATGTCTAAGTGGGTTAGAATAATCTAATAAAATACTCCCAATAAACAAA-TCAATCCTGCATTCTTTTTAAATGTTCTGTGAAAGCAATAAACCTTGTAGCTAATTTTcagtatgg-----catatacaccagttaacaatacatcttttaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29819736 934 + 173848474 CCAGTTCTCATTCATTCTGGGGTAAGGGGCTTTCAGAGAAAAGGTAAACACCCTTG-AGGCTTTCTGAAATGTCTTCTTTTTTTAATAGTAAGGACCCTTTCTCC--TTTACAGTTGAGTGTGGTGCTTTGCATGAAGTCACCCATCTC--TTTCCCTAAGGAGGCCAACTTTGAAGGATAGACTTTGAAGAAAGTTTATCTCAGTGC--TGTTTGTTAAGTGGCTTACCCCAAGAGGCCTCTTGCAG---AAGTAA--TTGTTAAAACCATGAGGCACACCTGAGAGAAAGGCGCCAGGGACTACCTAACAAAGCTGGCACCTCTGGAGAC-ACTTTGGAAGTATTTAATACATATGCCCTGATGGAGCATCTTACTCTTCAAAGAAAACAGTTTTGAGGCACCTAAGCAATTATGTACTT-ATTGACTTTGCAAAAACATTTATAACATCTTAACAATACAATTATCTGTAAGCTTTCTAATGAGCCCCCAAGTGACCTACTAGTGGAACAAAAACTTTCTTGATAAGAGCCAGTTTCCAAGAGACCATTTTTAATTGTATGAAAACTGAAAAATGATGGTGTTAAGAAGCTGCTGTTAGCTCTGTGTAAACTGTATGGACTCTTTGCCAGTACAGCCCTCAGTGAACACACATCTTTAATAGAAATTAGCAATTGCTATAACCTGTAGTCTTAGAA-GAAAGTAAATACTGTAGAGG-CCTCCAAAGTTATTCTAGTTACCTACTCTCTATATTGGGAGACAGAATTCAAACTCCAAAATTTCAAATTCTTCTTTGTTTTATGTCTAAGTGGGTTAGAATAATCTAATAAAATACTCCCAATAAACAAA-TCAATCCTGCATTCTTTTTAAATGTTCTGTGAAAGCAATAAACCTTGTAGCTAATTTTcagtatgg-----catatacaccagttaacaatacatcttttaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5622579 934 +   6154872 CCAGTTCTCATTCATTCTGGGGTAAGGGGCTTTCAGAGAAAAGGTAAACACCCTTG-AGGCTTTCTGAAATGTCTTCTTTTTTTAATAGTAATGACCCTTTCTCC--TTTACAGTTGAGTGTGGTGCTTTGCATAAAGTCACCCATCTC--TTTCCCTAAGGAGGCCAACTTTGAAGGATAGACTTTGAAGAAAGTTTATCTCAATGC--TGTTTGTTAAGTGGCTTACCCCAAGAGGCCTCTTGCAG---AAGTAA--TTGTTAAAACCATGAGGCACACCTGAGAGAAAGGCGCCAGGGACTACCTAACAAAGCTGGCACCTCTGGAGAC-ACTTTGGAAGTATTTAATACATATGCCCTCATGGATCATCTTACTCTTCAAAGAAAACAGTTTTGAGGCACCTAAGCAATTATGTACTT-ATTGACTTTGCGAAAACATTTATAACATCTTAACAATACAATTATCTGTAAGCTTTCTAATGAGCCCCCAAGTGACCTACTAGTAGAACAAAAACTTTCTTGATAAGAGCCAATTTCCAAGAGACCATTTTTAATTGTATGAAAACTGAAAAATGATGGTGTTAAGAAGCTGCTGTTAGCTCTGTGTAAACTGTGTGGACTCTTTGCCAGTACAGCCCTCAGTGAACACACATCTTTAATAGAAATTAGCAATTGCTATAACCTGTAGTCTTAGAA-GAAAATAAATACTGTAGAGG-CCTCCAAAGTTATTCTAGTTACCTACTCTCTATATTGGGAGACAGAATTCAAACTCCAAAATTTCAAATTCTTCTTTGTTTTATGTCTAAGTGGGTTAGAATAATCTAATAAAATACTCCTAATAAACAAA-TCAATCCTGTATTCTTTTTAAATGTTCTGTGAAAGCAATAAACCTTGTAGCTAATTTTcagtatgg-----catatacaccagttaacaatacatcttttaga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29850625 934 + 172585720 CCAGTTCTCATTAATTCTGGGGTAAGGGGCTTTCAGAGAAAAAGTAAACACCCTTG-AGGTTTTCTGAAATGTCTTCCTTTTTTAATAGTAATGACCCTTTCTAC--TTTACAGTTGAGTGTGGTGCTTTGCTTGCAGTCACCCATTTC--TTTCCCTAAGGAGGTCAACTTTGAAGGATAGACTTTGAACAAAGTTTATCTCAATGC--TGTTTGTTAAGTGGCTTACCCCAAGAGGCCTTTTGCAG---AAGTAA--TTGTTAAAACCATGATGCACAACTGAGAGAAAGGCGCCAGGGACTACCTAACAAAGCTGGCACCTCTGGAGAC-ACTTTGGAAGTATTTAATACATATGCCCTGATGGATCATGTTGCTCTTCAAAGAAAACAGTTTTGAGGCACCTAAGCAATTATGTACTT-ACTGACTTTGTGAAAACATTTATAACATCTTAATAATACAATTATCGGTAAGCTTTCTAATGAGCCCCCAAGTGACCTGCTAGTAGAACAAAAACTTTCTTGATAAGAGCCAGTTTTCAAGAGACCATTTTTAATTGTATGAAAACTGAAAAATGATGGTGTTAAGAAGCTGCTGTTAGCTCTCTGTAAACTGTATGGACTCTTTGCTAGTATGGCCCTCAGTGAACACACATCTTTAGTACAAACTAACAATTGCTATAACTTGTAGTCTTAGAA-GAAAACAAATACTGTGGAGG-CCTCCAAAGTTATTCTAGTTACCAATATTCTATATTGGGAGACAGAATTCAAACTCCAAAATTTCAAATTCTTCTTTGTTTTATGTTTAAGTGGGTTAGAATAATCTAATAAAATACTGCCCATAAACAAA-TCAATCCTGCATTTTAAAAAAATGTTCTGTGAAAGCAATAAACCTTGTTGCCAACTTTcaatatgg-----catatacaccagttaacaatacatcttttaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29513598 934 - 170955103 CCAGTTCTCATTAATTCTGGGGTAAGGCGCTTTCAGAGAAAAAGTAAACACCCTTG-AGGTTTTCTGAAATGTCTTCCTTTTTTAATAGTAATGACCCTTTCTAC--TTTACAGTTAAGTGTGGTGCTTTGCTTGCAGTCACCCATTTC--TTTCCCTAAGGAGGTCAACTTTGAAGGATAGACTTTGAACAAAGTTTATCTCAATGC--TGTTTGTTAAGTGGCTTACCCCAAGAGGCCTTTTGCAG---AAGTAA--TTGTTAAAACCATGATGCACAACTGAGAGAAAGGCGCCAGGGACTACCTAACAAAGCTGGCACCTCTGGAGAC-ACTTTGGAAGTATTTAATACATATGCCCTGATGGATCATGTTGCTCTTCAAAGAAAACAGTTTTGAGGCACCTAAGCAATTATGTACTT-ACTGACTTTGTGAAAACATTTATAACATCTTAATAATACAATTATCAGTAAGCTTTCTAATGAGCCCCCAAGTGACCTGCTAGTAGAACAAAAACTTTCTTGATAAGAGCCAGTTTTCAAGAGACCATTTTTAATTGTATGAAAACTGAAAAATGATGGTGTTAAGAAGCTGCTGTTAGCTCTCTGTAAACTGTATGGACTCTTTGCTAGTATGGCCCTCAGTGAACACACATCTTTAGTACAAACTAACAATTGCTATAACTTGTAGTCTTAGAA-GAAAACAAATACTGTGGAGG-CCTCCAAAGTTATTCTAGTTACCAATATTCTATATTGGGAGACAGAATTCAAACTCCAAAATTTCAAATTCTTCTTTGTTTTATGTTTAAGTGGGTTAGAATAATCTAATAAAATACTGCCCATAAACAAA-TCAATCCTGCATTTTAAAAAAATGTTCTGTGAAAGCAATAAACCTTGTTGCCAACTTTcaatatgg-----catatacaccagttaacaatacatcttttaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2500092 934 -   2996164 CCAGTTCTCATTAATTCTGGGGTAAGGGGCTTTCAGAGAAAAAGTAAACACCCTTG-AGGTTTTCTGAAATGTCTTCCTTTTTTAATAGTAATGACCCTTTCTAC--TTTACAGTTGAGTGTGGTGCTTTGCTTGCAGTCACCCATTTC--TTTCCCTAAGGAGGTCAACTTTGAAGGATAGACTTTGAACAAAGTTTATCTCAATGC--TGTTTGTTAAGTGGCTTACCCCAAGAGGCCTTTTACAG---AAGTAA--TTGTTAAAACCATGATGCACAACTGAGAGAAAGGCGCCAGGGACTACCTAACAAAGCTGGCACCTCTGGAGAC-ACTTTGGAAGTATTTAATACATATGCCCTGATGGATCATGTTGCTCTTCAAAGAAAACAGTTTTGAGGCACCTAAGCAATTATGTACTT-ACTGACTTTGTGAAAACATTTATAACATCTTAATAATACAATTATCGGTAAGTTTTCTAATGAGCCCCCAAGTGACCTGCTAGTAGAACAAAAACTTTCTTGATAAGAGCCAGTTTTCAAGAGACCATTTTTAATTGTATGAAAACTGAAAAATGATGGTGTTAAGAAGCTGCTGTTAGCTCTCTGTAAACTATATGGACTCTTTGCTAGTATGGCCCTCAGTGAACACACATCTTTAGTACAAACTAACAATTGCTATAACTTGTAGTCTTAGAA-GAAAACAAATACTGTGGAGG-CCTCCAAAGTTATTCTAGTTACCAATATTCTATATTGGGAGACAGAATTCAAACTCCAAAATTTCAAATTCTTCTTTGTTTTATGTTTAAGTGGGTTAGAATAATCTAATAAAATACTGCCCATAAACAAA-TCAATCCTGCATTTTAAAAAAATGTTCTGTGAAAGCAATAAACCTTGTTGCCAACTTTcaatatgg-----catatacaccagttaacaatacatcttttaga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     246213 934 +    766320 TCAGTTCTCATTAATTCTGCAGTAAGGGGCTTTCAGAGAAAAAGTAAACACCCTTG-AGGTTTTCTGAAATGTCTTCCTTTTTTAATAGTAATGACCCTTTCTAC--TTTACAGTTGAGTGTGGTGCTTTGCTTGCAGTCACCCATTTC--TTTCCCTAAGGAGGTCAACTTTGAAGGATAGACTTTGAACAAAGTTTATCTCAATGC--TGTTTGTTAAGTGGCTTACCCCAAGAGGCCTTTTACAG---AAGTAA--TTGTTAAAACCATGATGCACAACTGAGAGAAAGGCGCCAGGGACTACCTAACAAAGCTGGCACCTCTGGAGAC-ACTTTGGAAGTATTTAATACATATGCCCTGATGGATCATGTTGCTCTTCAAAGAAAACAGTTTTGAGGCACCTAAGCAATTATGTACTT-ACTGACTTTGTGAAAACATTTATAACATCTTAATAATACAATTATCGGAAAGCTTTCTAATGAGCCCCCAAGTGACCTGCTAGTAGAACAAAAACTTTCTTGATAAGAGCCAGTTTTCAAGAGACCATTTTTAGTTGTATGAAAACTGAAAAATGACGGTGTTAAGAAGCTGCTGTTAGCTCTCTGTAAACTGTATGGACTCTTTGCTAGTATGGCCCTCAGTGAACACGCATCTTTAGTACAAACTAACAATTGCTATAACTTGTAGTCTTAGAA-GAAAACAAATACTGTGGAGG-CCTCCAAAGTTATTCTAGTTACCAATATTCTATATTGGGAGACAGAATTCAAACTCCAAAATTTCAAATTCTTCTTTGTTTTATGTTTAAGTGGGTTAGAATAATCTAATAAAATACTCCCAATAAACAAA-TCAATCCTGCATTTTAAAAAAATGTTCTGTGAAAGCAATAAACCTTGTTGCCAATTTTcaatatgg-----catatacaccagttaacaatacatcttttaga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28756921 927 -  71996105 CCAgttctcattaattctggggtaaggggctttcagagAAAAAGTAAACACCCTTG-AGGTTTTCTGAAATGTCTTCCTTTTTTAATAGTAATGACCCTTTCTAC--TTTACAGTTGAGTGTGGTGCTTTGCTT-------TGCTTTTC--TTTCCCTAAGGAGGTCAACTTTGAAGGATAGACTTTGAACAAAGTTTATCTCAATGC--TGTTTGTTAAGTGGCTTACCCCAAGAGGCCTTTTACAG---AAGTAA--TTGTTAAAACCATGATGCACAACTGAGAGAAAGTCGCCAGGGACTACCTAACAAAGCTGGCACCTCTGGAGAC-ACTTTGGAAGTATTTAATACGTATGCCCTGATGGATCATGTTGCTCTTCAAAGAAAACAGTTTTGAGGCACCTAAGCAATTATGTACTT-ACTGACTATGTGAAAACATTTATAACATCTTAATAATACAATTATCGGTAAGCTTTCTAATGAGCCCCCAAGTGACCTGCTAGTAGAACAAAAACTTTCTTGATAAGAGCCAGTTTTCAAGAGACCATTTTTAATTGTATGAAAACTGAAAAATGATGGTGTTAAGAAGCCGCCGTTAGCTCTCTGTAAACTGTATGGACTCTTTGCTAGTATGGCCCTCAGTGAGCACACATCTTTAGTACAAACTAACAATTGCTATAACTTGTAGTCTTAGAA-GAAAACAAATACTGTGGAGG-CCTCCAAAGTTATTCTAGTTACCAATATTCTATATTGGGAGACAGAATTCAAACTCCAAAATTTCAAATTCTTCTTTGTTTTATGTTTAAGTGGGTTAGAATAATCTAATAAAATACTCCCAATAAACAAA-TAAATCCCGCATTTTAAAAAAATGTTCTGTGAAAGCAATAAACCTTGTTGCCAACTTTCAATATGG-----CATATACACCAGTTAACAATACATCTTTTAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     230359 934 -    352859 CCAGTTCTCATTAATTCTGCAGTAAGGGGCTTTCAGAGAAAAAGTAAACACCCTTG-AGGTTTTCTGAAATGTCTTCCTTTTTTAATAGTAATGACCCTTTCTAC--TTTACAGTTGAGTGTGGTGCTTTGCTTGCAGTCACCCATTTC--TTTCCCTAAGGAGGTCAACTTTGAAGGATAGACTTTGAACAAAGTTTCTCTCAATGC--TGTTTGTTAAGTGGCTTACCCCAAGAGGCCTTTTACAG---AAGTAA--TTGTTAAAACCATGATGCACAACTGAGAGAAAGGCGCCAGGGACTACCTAACAAAGCTGGCACCTCTGGAGAC-ACTTTGGAAGTATTTAATACATATGCCCTGATGGATCATGTTGCTCTTCAAAGAAAACAGTTTTGAGGCACCTAAGCAATTATGTACTT-ACTGACTTTGTGAAAACATTTATAACATCTTAATAATACAATTATCGGTAAGCTTTCTAATGAGCCCCCAAGTGACCTGCTAGTAGAACAAAAACTTTCTTGATAAGAGCCAGTTTTCAAGAGACCATTTTTAGTTGTATGAAAACTGAAAAATGATGGTGTTAAGAAGCTGCTGTTAACTCTCTGTAAACTGTATGGACTCTTTGCTAGTATGGCCCTCAGTGAACACACATCTTTAGTACAAACTAACAATTGCTGTAACTTGTAGTCTTAGAA-GAAAACAAATACTGTGGAGG-CCTCCAAAGTTATTCTAGTTACCAATATTCTATATTGGGAGACAGAATTCAAACTCCAAAATTTCAAATTCTTCTTTGTTTTATGTTTAAGTGGGTTAGAATAATCTAATAAAATACTCCCAATAAACAAA-TCAATCCTGCATTTTAAAAAAATGTTCTGTGAAAGCAATAAACCTTGTTGCCAATTTTcaatatgg-----catatacaccagttaacaatacatcttttaga
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2400505 934 -   3067355 CCAGTTTTCATTAATTCTGGAGTAAGGGGCTTTCAGAGAAAAAGTAAACACCCTTG-AGATTTTCTGAAATGTCTTCCTTTTTTAATAGTAATGACCCTTTCTAC--TTTACAGTTGAGTGTGGTGCTTTGCTTGCAGTCACTGATTTC--TTTCCCTAAGGAGGCCAACTTTGAAGGATAGACTTTGAACAAAGTTTATCTCAATGT--TGTTTGTTAAGTGGCTTACCCCAAGAGGCCTTTTGCAG---AAGTGA--TTGTTAAAACCATGACGCACAACTGAGAGAAAGGTGCCAGGGACTATCTAACAAAGCTGGCACCTCTGGAGAC-ACTTTGGAAGTATTTAATACATATGCCCTGATGGATCATGTTGCTCTTCAAAGAAAACAGTTTTGAGGCACCTAAGCAATTATGTACTT-ACTGACTTTGTGAAAACATTTATAACATCTTAATAACACAATTATCGGTAAGCGTTCTAATGAGCCCCCAAGTGACCTGCTAGTAGAACAAAAACTTTCTTGATAAGAGCCAGTTTTCAAGAGACCGTTTTTAATTGTATGAAAACTGAAAAATGATGGTGTTAAGAAGCTGCTGTTAGCTCTCTGTAAACTGTATGGACTCTTTGCTAGTATGGCCCTCAGTGAACACACATCTTTAGTACAAATTAACAATTACTATAACTTGTAGTCTTAGAA-GAAAACAAATACTGTGGAGG-CCTCCAAAGTTATTCTAGTTACCTGCTCTCTATATTGGGAGACAGAATTCAAACTCCAAAATTTCAAATTCTTCTTTGTTTTATGTTTAAGTGGGTTAAAATAATCTAATAAAATAGTCCCAATAAACAAA-TCAATCCTGCATTTTAAAAAAATGTTCTGTGAAAGCAATAAACCTTGTTGCTAACTTTcaatatgg-----catatacaccagttaacaatacatcttttaga
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     360804 919 +    730504 CCAGTTCTCATTCATCCTGGGGTTAGTGCTTTT-ATAGAAAAAGTAAACACTCTAG-AGGTTTCCTAAAGTGTCTTCCTTTTTCAATAGTAATGA--CATTCTAC--TTTACAGTTGA--GAGGTGCTTGCTGTGCAGTCACTTATCTC--TTTCCCTAAGGAGATT-----------TTAAACTTCAAAGAAAATTTATCTCAATGT--TGTTTGTTACATGGCTTGCCCCAGGAGGCCTCTTCCAG---GACTAA--TTGTTAAGACCATGAGTCACAATTGAGAAAGAGATGACGATGACCGCTTAACAAAGCTGCTGCCTCTGGAGACAACCTT-GAAGTGTTTAGTATGTATGCCCTGATGGATCATCTTGCTCTTCAGAGAACATACTTTTGAGGCACCTCAACAATTATGT-----ACTTACTTTGTG-AAATATTTATAACATTTTAATAATACAATAATTTGTAAGCTTTCTAATGAGCCCCCAAGTGACCTACTGGTAGAACAAAAACTTTCTTGACAAGAACCAACTTCCAGGAGACTACTTTTAATTGCATGAAAATTGCAAAATGATAGCTTTAAGCAGCTGATGTTTGCACTGTGCCAAATGAGTGGACTGATTGCTGGTACAGGTCTTGGTGAGCACACATCTTTAGTACAGATTAACAATTGCTATaacctgtagtcttggaaagaaaataaatagagcagggg--cttcaaagttattctagttccctatactctacattaggaGAAGGAATTCAATCTCCAAAATTACAAATACTTCTTTGTTTTGTGTCTTAATGGACAGGAATAATCTAATGAAATACTCCAAATAGACCGATTCAATCCCTCATTGTTTTAAAATGTTTCATGAAAACAATAAAACCTGTTGCTAATTTTCAATATAGTATTTTATATACACTATttaagaatacagcttttaga
i proCoq1.NW_012152574v1   I 97 C 0
s otoGar3.GL873742          1994018 905 -   2232465 ACAGTTCTTATTCATTCTGGGACTAGTGACTTT-TAAGGAAAAGTAAACACCCCTGCAGGTTTCCTGAAGTGTCTTCCT-----AAAAAGGATGA--CTTTTACC--TTTACAGTTGA--GTGAGGCTTTCTGTGCAGTCACTTATATC--TTTCCCAAAGGAGGCT-----------TTAAACTTTGGAGAAAAATTATCTCAATGCTGTGTTTGTTAAGTGGCTTG-CCCAAGAGGCCTCTTCCAG---AACTAA--TTGTCAAAACCATGAGGCATAATTGAGATAGAGATGCCAGTGTCTGCCTCCTGAAGCTGGTACCTCTGGAGACAACCTTGGAAGTGTTCAGTGTGTATGCCCTGATGGATTATCTTGCTCTTCAGAGAACATAGTTATGAGGCCCTTAAATAATTATGTATGTAACTAACTTTATGaaaatatttataacattttaataatacaattatttGTAAGCTTTCTAATGAG-CCCCAAGTGACCTACTGGTAGAACAAAAACTTTCTTGACTAGAGCCAATTTCC---AGACCATTTTTAATTGCATGAAAAATTAAAAATGATAGTTTTAAacagctgatgtttgctctgtgtaaaatgagtggactgtttcctgttacaggtcctggtgagcacatgtctttagtacaaaCTAGCAATTGCTATAACCTATATTCTTAGAAGGAAAATAACTACTGTAGGGGGCCTCCAAAGATATTCTAGTTACTAA----CTATATTAGGAGAAGAAATTCAAATTCCAAAATCTCAAAAACGTCTTTG--TTGTGTTTTAATGAGCTAGAATAATCTAATGAAATAATCCAAATACATTGATTCAATTCCTCATTGTTTTCAAATATTCCATGAAAGCAAAAAACCTTGTTGTTAATTTCCAA-acag---------aacactacttaagaatacagactgtaga
i otoGar3.GL873742         I 2 C 0
s canFam3.chr35            26163035 881 +  26524999 ACAGCTTTCATTCATTCTGGATGTAGAAGCTCTTAGAGAAAAA-TAAACACTC--A-AAGGTTCTTACAGCATCTTCCT-TTCCAATAGTAACGACATTTCCTAC--TTCTCAGTGGAGGGAGG---TTTTGGTGTAATTACCCATCTCTGTTTCCCTGAGGAGACC-----------TTAAACTTTGAGAAAAGTGCATGCCAATGT--TGCCGGTTAAGTGGCCTTCCCCA-GAGACCTCTTCTAGTTCAACTGAAGTTGATAAAACTAGGA-GAAAAACTGAG-GAAGCGCACCA---ACTGCTGAACAAAGTGGCCTCCTCTGGAGATTACCCTGGATGTGGTTGGTTTGAATGCCATGATAAGGCATCTTGCTCTTCAGAGATAATAGTTTTGAGGTGTTTAAACAATTATGTACTT-----ACTTTGTGAAAATATTTATACCATTTTAATGATATAATTTTCTGTAAGCTTTCTAATGAGCCCTCAAGTGACCT--CAGTAAAACAAGACTGTGCTTGGCAAAAGCAATTTCCAAGGAGACCATTTTTAATTGC-TTAAAATTTCAAACTGATGGTGTT----AGCAGCTGCTTGC------TGGAATGGGTAGGCTCCTCCCTCATACAAGTCCTGATGAGCACATTTATTTAATACAG--TAACAGTTACCATAAGCTGGAGTCTGAGA--GAGGTTAAATGCTGTAGGGG-TCTCCAGAGTTATT-TGGTTACCTA--TTCTGTATCAGGCAAAGGAATTCACACTCCAGAAATTCAAATCCTTCTTTGCTTTGT---TAAGTGA--TGGAATAATCTGATGAAATACTCCAAATACAGTGATCCAATCCTTAATTTTTTTAACCTATTTCATGAAA----------CTGCTACTAATTCTCAATGTAG-----TATATATATcagttaagaacacagcttgaaga
i canFam3.chr35            C 0 I 6132
s dasNov3.JH570741           445240 864 +   1532071 CCACTTTTCATTCTCTCTGGGGTGAGCAGCTTTTAAAGA------AAACATTCCAG-AGGTTTCTTGAAGCTTCTCCCAGTTTCAATAGCAAAAACACTCTTTTCTGTGTGCAGTTGT-----GTGCCCTGTGTTCAATTAT---TCTT--TTTACCTGGGGAAGTC-----------TTAGATTTTAAGGAAAACTT---TCCATGC--AGTTTGTTAAGTGGTCTGCCCCCGGAGACCTCTTCCAG---GAATAA--TTGCAAAAACCACCAGGCCAAATGGAGACGGATGCACTGGTTGCTGCCCAGCAAAGCTGGCACCTCTGGAATG-GCCTTGAAAGCATTCGATATATATGCCCTGATGAATCATC--------------------TTTGGAAACACCTGAACAATTGTG--CTT-ACTGGCTTTGAGAGAACATTTATAATATTTTAATGATACAATTATCAGTAAGCTTTCTAATGAGTCTCCAAGTGACTTACTGGTAGACCAAC---------------AGTCCGTTTTCAAGAAGAC-TTTTTAATTGTAAAGAAACTGCAAAACAATGGCTTTAAGCAGCTGCCATTTTCTCTGTGTTTAATGGCTGAACTACTTCCTTGTATAGGCCTCAGTGATCAAATGTCTTTACTGCAGATTAACAATTGTTATAACCTGTACCTTCAGAA-AAGAGTAAATCCTGGAGGGA-CCTTCAAGTTAATGCTAATTGGTCA--CTCTGTATTAGGGGAATGCATTCAAATTTCAAAATTTCAGA---TTCTCTGGTTTGTGGTTAAAGGACCTGGAATAATCTAAAGAAATACTCAAAATACACTGATTCCGTGCTTCATTCTGTTTTTAGTTCCACTGAAAACAATAAACCACATTTCTAATTATCAATATG------CATATATACCTGTTAG-AATGAAGCCTTTCTa
i dasNov3.JH570741         C 0 C 0

a score=175112.000000
s hg38.chr6_GL000254v2_alt   610397 30 +   4827813 atcagatggtgtgagtttgaacaatgaa--cc-
s panTro5.chr6             29582437 30 + 175400573 atcagatggtgtgagtttgaacaatgaa--cc-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29820670 30 + 173848474 atcagatggtgtgagtttgaacaatgaa--cc-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5623513 30 +   6154872 atcagatggtgtgagtttgaacaatgaa--cc-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29851559 30 + 172585720 atcagatggtatgagtttgaacaatgaa--cc-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29514532 30 - 170955103 atcagatggtatgagtttgaacaatgaa--cc-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2501026 30 -   2996164 atcagatggtatgagtttgaacaatgaa--cc-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     247147 30 +    766320 atcagatggtatgagttggaacaatgaa--cc-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28757848 30 -  71996105 ATCAGGTGGTATGAGTTTGAACAATGAA--CC-
i chlSab2.chr17            C 0 I 1561
s manLeu1.NW_012099655v1     231293 30 -    352859 atcagatggtatgagttggaacaatgaa--cc-
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2401439 30 -   3067355 atcagatgatatgagtttgaacaattaa--cc-
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     361723 30 +    730504 atcatat--tatgtgtttgaacaaaggcctcc-
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          1994923 28 -   2232465 atcagat--tgtgtgtttgatcaatgac--cc-
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           446104 31 +   1532071 gtcaaattctttgcatttgaacaatggc--ctc
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26163916 6132 +  26524999 I

a score=229692.000000
s hg38.chr6_GL000254v2_alt   610427 41 +   4827813 accaattgttaggtatgtgacttaaagaaagctagttaatt---
s panTro5.chr6             29582467 41 + 175400573 accaattgttaggtatgtgacttaaagaaagctagttaatt---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29820700 41 + 173848474 accaattgttaggtatgtgacttaaagaaagctagttaatt---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5623543 41 +   6154872 accaattgctaggtatgtgacttaaagaaagctagttaatt---
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29851589 41 + 172585720 accaattattaggtatgtgacttaaggaaaactagttaatt---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29514562 41 - 170955103 accaattattaggtatgtgacttaaggaaaactagttaatt---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2501056 41 -   2996164 accaattattaggtatgtgagttaaggaaaactagttaatt---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     247177 41 +    766320 actaattattaggtatgtgacttaaggaaagctagttaatt---
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     231323 41 -    352859 actaattattaggtatgtgacttaaggaaagctagttaatt---
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2401469 41 -   3067355 accaattattaggtatgtgacttaaggaaagctagttaatt---
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     361753 41 +    730504 cccaattattgggtatgtgatttagagaaagctagttaatt---
i proCoq1.NW_012152574v1   C 0 I 11702
s otoGar3.GL873742          1994951 41 -   2232465 acaaattattaggtttatgacatagaggaagctagttaatc---
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           446135 43 +   1532071 atcacttcttaggtatgtgaccta-ggaaagatgattaacattt
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26163916 6132 +  26524999 I
e chlSab2.chr17            28757878 1561 -  71996105 I

a score=209249.000000
s hg38.chr6_GL000254v2_alt   610468 49 +   4827813 tggtggctcagttg--------taaaaaagatggtaatagtatctctcacatgtggc--------
s panTro5.chr6             29582508 49 + 175400573 tggtggctcagttg--------taaaaaagatggtaatagtatctctcacatgtggc--------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29820741 49 + 173848474 tggtggctcagttg--------taaaaaagatggtaatagtatctctcacatgtggc--------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5623584 49 +   6154872 tggtggctcagttg--------taaaaaatatggtaatagtatctctcacatgtggc--------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29851630 49 + 172585720 tggtggctcaattg--------taaaaaagatggtaatagtatgtctcgcatgtggc--------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29514603 49 - 170955103 tggtggctcaattg--------taaaaaagatggtaatagtatgtctcgcatgtggc--------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2501097 49 -   2996164 tggtggctcaattg--------taaaaaagatggtaatagtatgtctcgcatgtggc--------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     247218 49 +    766320 tggtggctcaattg--------taaaaaagatggtaataatatctctcgcatgtggc--------
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     231364 49 -    352859 tggtggctcaattg--------taaaaaagatggtaataatatctctcgcatgtggc--------
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2401510 49 -   3067355 tggtggctcaattg--------taaaaaagatggtaatagtatctctcgcatgtggc--------
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1994992 57 -   2232465 atatagcttaattttttatctctaaaaccaatgacaatagtacctctcttgtgtcac--------
i otoGar3.GL873742         C 0 I 8
s dasNov3.JH570741           446178 65 +   1532071 ctaaggctcaattatttatctgtaaaaaatacaggaatagtgcctttctcaagagcttgctgtgc
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     361794 11702 +    730504 I
e canFam3.chr35            26163916 6132 +  26524999 I
e chlSab2.chr17            28757878 1561 -  71996105 I

a score=625083.000000
s hg38.chr6_GL000254v2_alt   610517 129 +   4827813 atgttaaatcggttaatatatattaactacattaaataacatcacat---ataagcgtggaagagatgttagtGCTCATCATTCAGCCACCCTAGTAACGATGTATT--ATTTTCTATAG----TTATT--TCAAAAAAT
s panTro5.chr6             29582557 129 + 175400573 atgttaaatgggttaatatatattaactacattaaataacatcacat---ataagcatggaagagatgttagtGCTCATCATTCAGCCACCCTAGTAATGATGTATT--ATTTTCTATAG----TTATT--TCAAAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29820790 129 + 173848474 atgttaaatgggttaatatatattaactacattaaataacatcacat---ataagcatggaagagatgttagtGCTCATCATTCAGCCACCCTAGTAACGATGTAtt--attttctatag----ttatt--tcaaaaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5623633 129 +   6154872 atgttaaatgggttaatatatattaactacattaaataacatcacat---ataagcatggaagagatgttagtGCTCATCATTCAGCCACCCTAGTAACGATGTAtt--attttctatag----ttatt--tcaaaaaat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29851679 129 + 172585720 atgttaaatgggttaatatatattaactacattaaataatatcacat---ataagcatggaagagatgttagCGCTCATCATTCAGTCACCCTAGTAACAATGTATT--GTTTTTGATAG----TTACT--TCAAAAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29514652 129 - 170955103 atgttaaatgggttaatatatattaactacattaaataatatcacat---ataagcatggaagagatgttagCGCTCATCATTCAGTCACCCTAGTAACAATGTATT--GTTTTTGATAG----TTACT--TCAAAAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2501146 129 -   2996164 atgttaaatgggttaatatatattaactacattaaataatatcacat---ataagcatggaagagatgttagCGCTCATCATTCAGTCACCCTAGTAACAATGTATT--GTTTTTGATAG----TTACT--TCAAAAAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     247267 129 +    766320 atgttaaatgggttaatatatattaactacattaaataatatcacat---ataagcatggaagagatgttagcgcttatcattCAGTCACCCTAGTAACAATGTATT--GTTTTCAATAG----TTACT--TCAAAAAAC
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     231413 129 -    352859 atgttaaatgggttaacatatattaactacattaaataatatcacat---ataagcatggaagagatgttagcgcttatcattCAGTCACCCTAGTAACAATGTATT--GTTTTCGATAG----TTACT--TCAAAAAAC
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2401559 129 -   3067355 atgttaaatgggttaatatatattaactacattaaataatatcacat---ataagcatggaagagatgttagCGCTCATCATTCAGTCACCCTAGTAACAGTGTATT--GTTTTCTATAG----TTACT--TCAAAAAAC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          1995057 125 -   2232465 atgtcaagtatgttaatatatattgatcacattaaatagcatcaca---------catccacgaaatgttagctcttatCATTCAGCCACCCTTATAGCACTATGTTGGGTTTTTTAAAA----TGTtt--tgtataaat
i otoGar3.GL873742         I 8 I 12030
s canFam3.chr35            26170048 113 +  26524999 ATATTGAGTAGGTT--TTTATGTTAGTCCTATTTAATAG--TCATAT---ATAATAAT--------------CTCCAATCATTCTACCATCCAAATAACAATAGGTT--GTTTTCTACAG----TTATTGATTTAAAAGT
i canFam3.chr35            I 6132 I 2
s dasNov3.JH570741           446243 135 +   1532071 atattaaacaggttggagagtactaataatacc-aatagtgtcacacatgataagcacacaagaaatgttagctctcatCATTCTACTAACCTAA-AACAATGTATT-AATTTTCCATGGTCATTTATT--TCACAAAGT
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     361794 11702 +    730504 I
e chlSab2.chr17            28757878 1561 -  71996105 I

a score=203092.000000
s hg38.chr6_GL000254v2_alt   610646 40 +   4827813 ACTTTTGTATTTTTGTTTTTAAAAattatttttattttat
s panTro5.chr6             29582686 40 + 175400573 ACTTTTGTATTTTTGTTTTTAAAAattatttttattttat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29820919 40 + 173848474 acttttgtatttttgtttttaaaaattatttttattttAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5623762 40 +   6154872 acttttgtatttttgtttttaaaaattatttttattttAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29851808 40 + 172585720 ACTTTTGTATTTTTGTTTTTAAAAattatttttattttat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29514781 40 - 170955103 ACTTTTGTATTTTTGTTTTTAAAAattatttttattttat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2501275 40 -   2996164 ACTTTTGTATTTTTGTTTTTAAAAattatttttattttat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     247396 40 +    766320 ACTTTTGTATTTTTGTTTTTAAAAattatttttattttat
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     231542 40 -    352859 ACTTTTGTATTTTTGTTTTTAAAAattatttttattttat
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2401688 40 -   3067355 ACTTTTGTATTTTTGTTTTTAAAAattatttttattttat
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35            26170163 39 +  26524999 TATTTTGTGTCAATGTTTTT-TTAATTATATTtattttat
i canFam3.chr35            I 2 I 1483
s dasNov3.JH570741           446378 40 +   1532071 ACATTTGCATCTATGTTTTTAAAAGTCATGTTCATTTTAC
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     361794 11702 +    730504 I
e otoGar3.GL873742          1995182 12030 -   2232465 I
e chlSab2.chr17            28757878 1561 -  71996105 I

a score=1437538.000000
s hg38.chr6_GL000254v2_alt   610686 319 +   4827813 agaagagaaaattcagattaaagaaaccataa----ctatcttgactaagattgcacTGGTATTTATCAGTAGTGTTCAACTTCAAATGCACATCTTCTGATTATGAGAATGGTGGTTCTTCCATCACCTTA--TAGCTATTTCCACATCCATTTACAATT-----------CAAGCTCTTCCAA-TACTGGAAGTGTTAAAAATGGGATGGAAAACTGTAACTGGAAGAAATAAACACTGACTATTTTGTTTCACTTAAGGTTAATCAAATTTCAAAATGCACATTCTTTTTCCCATTACGGTGGTATAAGTA-ACTCATTCTGTCTCTTCCCCTga
s panTro5.chr6             29582726 320 + 175400573 agaagagaaaattcagattaaagaaaccataa----ctatcttgactaagattgcacTGGTATTTATCAGTAGTGTTCAACTTCAAATGCACATCTTCTGATTATGAGAATGGTGGTTCTTCCATCACCTTA--TAGCTATTTCCACATCCATTTACAATT-----------CAATCTCTTCCAA-TACTGGAAGTGTTAAAAATGGGATGGAAAACTGTAACTGGAAGAAATAAACACTGACTATTTTGTTTCACTTAAGGTTAATCAAATTTCAAAATGCACATTCTTTTTCCCATTACGGTGGTGTAAGTACACTCATTCTGTCTCTTCCCCTga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29820959 320 + 173848474 AGAAGAGAAAATTCAGATTAAAGAAACCATAA----CTATCTTGACTAAGATTGTACTGGTATTTATCAGTAGTGTTCAACTTCAAATGCACATCTTCTGATTATGAGAATGGTGGTTCTTCCATCACCTTA--TAGCTATTTCCACATCCATTTACAATT-----------CAAGCTCTTCCAA-TACTGGAAGTGTTAAAAATGGGATGGAAAACTGTAACTGGAAGAAATAAACACTGACTATTTTGTTTCACTTAAGGTTAATCAAATTTCAAAATGCACATTCTTTTTCCCATTACGGTGGTGTAAGTACACTCATTCTGTCTCTTCCCCTga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5623802 320 +   6154872 AGAAAAGAAAATTCAGATTAAAGAAACCATAA----CTATCTTGACTAAGATTGCACTGGTATTTATCAGTAGTGTTCAACTTCAAATACACATCTTCTGATTACGAGAATGGTGGTTCTTCCATCACCTTA--TAGCTATTTCCACATCCATTTACAATT-----------CAAGCTCTTCCAA-TACTGGAAGTGTTAAAAATGGGATGGAAAACTGTAACTGGAAGAAATAAACACTGACTATTTTGTTTCACTTAAGGTTAATCAAATTTCAAAATACACATTCTTTTTCCCATTACGGTGGTGTAAGTACACTCATTCTGTCTCTTCCCCTga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29851848 320 + 172585720 agaaaagaaaattcagattaaagaaaccataa----ttatcttgactaaggttacactggtatgcatcagtagtgtccaactgcaaacgcacgtcttctgattacgagtatgatggttcttccaTCAACTTG--TAGCTATTTCCACATCCATTTACAATT-----------CGACCTCTTCCAA-TACTGGAAGAGTTAAAAATGGGATGGAAAACTACATTTGGAAGAAATAAACACTGACTGTTTTGTTTCACTTAAGGTTAATCAAATTTCAAAATACACATTCTTGCTCCCATTATGGTGGTGTAAGTACACTCATTCTGTCTTTCCCCCTga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29514821 320 - 170955103 agaaaagaaaattcagattaaagaaaccataa----ttatcttgactaaggttacactggtatgcatcagtagtgtccaactgcaaacgcacgtcttctgattacgagtatgatggttcttccaTCAACTTG--TAGCTATTTCCACATCCATTTACAATT-----------CAACCTCTTCCAA-TACTGGAAGAGTTAAAAATGGGATGGAAAACTACATTTGGAAGAAATAAACACTGACTGTTTTGTTTCACTTAAGGTTAATCAAATTTCAAAATACACATTCTTGCTCCCATTATGGTGGTGTAAGTACACTCATTCTGTCTTTCCCCCTga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2501315 320 -   2996164 agaaaagaaaattcagattaaagaaaccataa----ttatcttgactaaggttacactggtatgcatcagtagtgtccaactgcaaacgcacgtcttctgattacgagtatgatggttcttccaTCAACTTG--TAGCTATTTCCACATCCATTTACAATT-----------CGACCTCTTCCAA-TACTGGAAGAGTTAAAAATGGGATGGAAAACTACATTTGGAAGAAATAAACACTGACTGTTTTGTTTCACTTAAGGTTAATCAAATTTCAAAATACACATTCTTGCTCCCATTATGGTGGTGTAAGTACACTCATTCTGTCTTTCCCCCTga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     247436 320 +    766320 agaaaagaaaattcagattaaagaaaccatta----ctatcttgactaagattacactgttatgtatcagcagtgtccaactgcaaacgcacgtcttctgattacgagtatgatggttcttccaTCAACCTA--TAGCTATTTCCACATCCATTTACAATT-----------CAAGCTCTTCCAA-TACTGGAAGTGTTAAAAATGGGATGGAAAACTACATCTGGAAGAAATAAACACTGACTGTTTTGTTTCACTTAAGGTTAATCAAATTTCAAAATACACATTCTTGTTCCCATTATGGTGGTGTAAGTACACTCATTCTGTCTTTCCCCCTga
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     231582 320 -    352859 agaaaagaaaattcagattaaagaaaccataa----ctatcttgactaagattacactgttatgtatcagcagtgtccaactgcaaacgcacgtcttctgattacgagtatgatggttcttccaTCAACCTA--TAGCTATTTCCACATCCATTTACAATT-----------CAAGCTCTTCCAA-TACTGGAAGTGTTAAAAATGGGATGGAAAACTACATCTGGAAGAAATAAACACTGACTGTTTTGTTTCACTTAAGGTTAATCAAATTTCAAAATACACATTCTTGTTCCCATTATGGTGGTGTAAGTACACTCATTCTGTCTTTCCCCCTga
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2401728 314 -   3067355 agaaaagaaaattcagattaaagaaaccatag----ctatcttgactaagattacactggtatgtatcagtagtgtctaacttcaaatacacgtcttctgattatgagtatagtggttcttccaTCAACTTA--TAGCTATT------TCCATTTACAATC-----------CAAGCTCTTCCAA-TACTGGAAGTGTTAAAAATGGGATAGAAAACTACATCTGTAAGAAATAAACACTGACTATTTTGTTTCACTTAAGGTTAATCAAATTTCAAAATACACATTCTTGTTCCCATTATGGTGGCATAAGTACACTCATTCTGTCTTTTCCCCTGA
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35            26171685 312 +  26524999 agaagagaaaaatgaagttaagaaaaccataa----cggtcttgaccaagacttaac---------------atgcccaacttcagactcaagtctgctgactacaagtctggtagtcctttcagcacccca--cagcTATTTCTATGCCTATGCACAATTGTTAC----ACCCAGTTTTTCCAAGGGCTGATAGGGTT-GAAACAGAATGGGAAACTGCATCTAGAAGAAATAAGCATTGTCTATTTTGTTTCTCTTCATGTTAATCAAATTTCAAGGTATAGAATCAAGTTCACAATCTgatggcataaacacactcactccaactctcctactaa
i canFam3.chr35            I 1483 I 4719
s dasNov3.JH570741           446418 315 +   1532071 AGAAAGGAAAATCTAAGATAAGAAAATCACAGCACCCTAGATAGACTAAGATTGCCCTGGTGTTGAGCAGGAATGTCTAACTACAAACACAAGTCTTCTAAC-ATAAATCTGGTG---CTCCCACTACCTCACGTAGTTGTTTCCAC-CCTATCTGCCATTGCTGTTATAGGTAATCTCTTCTGA----------------AAACATGATGGAAATC-ACATCTGGAAGAAATAAGCACCAACTATTATGATTTGCTCAAGTTTAATCTATCTTCATAATATg-gttctggttcccagtgtgatggagtgaagacattcatcctgtcatttccacgga
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     361794 11702 +    730504 I
e otoGar3.GL873742          1995182 12030 -   2232465 I
e chlSab2.chr17            28757878 1561 -  71996105 I

a score=5500.000000
s hg38.chr6_GL000254v2_alt   611005 1 +   4827813 g
s panTro5.chr6             29583046 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29821279 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5624122 1 +   6154872 g
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29852168 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29515141 1 - 170955103 g
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2501635 1 -   2996164 g
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     247756 1 +    766320 g
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     231902 1 -    352859 g
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2402042 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH570741           446733 1 +   1532071 g
i dasNov3.JH570741         C 0 I 37259
e proCoq1.NW_012152574v1     361794 11702 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          1995182 12030 -   2232465 I
e chlSab2.chr17            28757878 1561 -  71996105 I

a score=177668.000000
s hg38.chr6_GL000254v2_alt   611006 49 +   4827813 aaagttaaaattgtccctgattgcatgtggtatattattgtacataaaa
s panTro5.chr6             29583047 49 + 175400573 aaagttaaaattgtccctgattgcatgtggtatattattgtacataaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29821280 49 + 173848474 aaagttaaaattgtccctgattgcatgtggtatattattgtacataaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5624123 49 +   6154872 aaagttaaaattgtccctgattgcatgtggtatattattgtacataaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29852169 49 + 172585720 aaagttaaaattgtccctgattgcatatgatatattatcatacataaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29515142 49 - 170955103 aaagttaaaattgtccctgattgcatatgatatattatcatacataaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2501636 49 -   2996164 aaagttaaaattgtccctgattgcatatgatatattatcatacataaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     247757 48 +    766320 aaagttaaaattgtccctgattgcataagatatattatcatacat-aaa
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     231903 48 -    352859 aaagttaaaattgtccctgattgcataagatatattatcatacat-aaa
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2402043 49 -   3067355 AAAGTTCAAATTGTCCCTGATAGCATATGATATATTATCATACATAAAA
i colAng1.NW_012115566v1   C 0 I 5922
e dasNov3.JH570741           446734 37259 +   1532071 I
e proCoq1.NW_012152574v1     361794 11702 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          1995182 12030 -   2232465 I
e chlSab2.chr17            28757878 1561 -  71996105 I

a score=4511378.000000
s hg38.chr6_GL000254v2_alt   611055 1525 +   4827813 gctataaagaatttatcaaaaaactgttagaaataataaatgaattcaataaggttgcaggatacaaatcaacatataaaaattatttccatacactaacaaca----atctaaaaaagaaatcaagaaaacaaccccacttacaatagctac-aaaaaaaagaaaaataacatacttaagaattaacataaccaaggaggttaaagatttgtacacaaaaaaa-ctataaagcattgattaaagtaattgaaaaagacacaaataattggaaaaacatcctatggatatatcctgcaaattggaagaaataatattgttaaaacgttcatgctattcaaagtaatctacagagtcagcataatctcatcaaaatatcgatgacatgtttcacagaaatgggaaaaaatcctataattctatggaactaaaaaaataacccaagtagccaaagcaatcttgcaaaaaatgaacaaagctgcaggtattatactacctgatttgaaaatacactccaaagctaaagcgattaagacagcatggtactggcataaaaacagacagaaagaccaatggaaaaaaataaagaactcagaaataaatgtatgcatttacagtccattgatttttgacaaaagtgccaatagcacacaatggagaaaagacagttccttcaacaactaatgttggaacaattggatatttgcatgccagtagaatgaaattggaccctaatctcacacaatatttttt-taaaaaa-ctgaaaatggattaaagacatttggattaaatgtgtaatttgaaattgtaaaaatactagaagaaaatattggggaaaaagttccatgacattgatctgggaaagactttttggatatgaccttgaaagtactggcaataaagccaaaaagagacaattttgactacatcaaacaaaaatgcttcagcacagccaagcgaacaatcaactgagtgaagagacaacctttgtaatcggccaagcacacatctgttaagaggttactattcaaaatatatattacaaataacccaattaaagaaaacaaataacctggtt-----acgatcaaatgacctgaagagacatttctcagaagaagacatgcaaatggccaacaggtatatgaaaaaatactaaattaatagtcagcagagaaaggcaaatgaaaaccacaatgagatataaccttatatctgttagaataattaatattaaaaagacaaaaggtaacacatgctgataaggatgtcaagaaaaaggaactcttccgcactgttgatgcgaatgtgagtaagtatagccattatagaaaa-tagtatgaaagttctttaaaaaattaaaaataaaaccaccatatgatcaaggaatcccattacttggtatatatccaaggaaatgaaatcagcatatcaaagaaatatgtgcactccaatgtttattgcagcaccattcataatagccaagacatggaatcaacctaagtgttcatcagcggatgaatggataaataaaata
s panTro5.chr6             29583096 1525 + 175400573 actataaagaatttatcaaaaaactgttagaaataataaatgaattcaataaggttgcaggatacaaatcaacatataaaaattatttccatacactaacaaca----atctaaaaaagaaatcaagaaaacaaccccacttacaatagctac-aaaaaaaagaaaaataacatacttaggaattaacataaccaaggaggttaaagatttgtacacaaaaaaa-ctataaagcattgattaaagtaattgaaaaagacacaaataattggaaaaacatcctatggatatatcctgcgaattggaagaattaatattgttaaaacgttcatgctattcaaagtaatctatagagtcagcataatctcatcaaaatatcgatgacatgtttcacagaaatgggaaaaaatcctataattctatggaactaaaaaaataacccaagtagccaaagcaatcttgcaaaaaatgaacaaagctgcaggtattatactacctgatttgaaaatacactccaaagctaaagcgattaagacagcatggtactggcataaaaacagacagaaagaccaatggaaaaaaataaagaactcagaaataaatgtatgcatttacagtccattgatttttgacaaaagtgccaatagcacacaatggagaaaagacagttccttcaacaactaatgttggaacaactggatatttgcatgccagtagaatgaaattggacccttatctcacacaatttttttt-taaaaaa-ctgaaaatggattaaagacatttggattaaatgtgtaatttgaaattgtaaaaatgctagaagaaaatattggggaaaaagttccatgacattgatctgggaaagactttttggatacgaccttgaaagtactggcaataaagccaaaaagagacaattttgactacatcaaacaaaaatgcttcagcacagccaagcgaacaatcaactgagtgaagagacaacctttgtaatcggccaagcacacatctgttaagaggttactattcaaaatatatattacaaataacccaattaaataaaacaaataacctggtt-----acgatcaaatgacctggagagacatttctcagaagaagacatgcaaatggccaacaggtatatgaaaaaatactaaattaatagtcagcagagaaatgcaaatgaaaaccacaatgagatataaccttatatctgttagaataattaatatgaaaaagacaaaaggtaacacatgctgatgaggatgtcaagaaaaaggaactcttccgcactgttgatgcaaatgtgagtaagtatagccactatagaaaa-tagtatgaaagttctttaaaaaattaaaaataaaaccaccatatgatcaaggaatcccattacttggtatatatccaaggaaatgaaatcagcatatcaaagaaatatgtgcactccaatgtttattgcagcaccattcataatagccaagacatggaatcaacctaagtgttcatcagcggatgaatggataaataaaata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29821329 1524 + 173848474 actataaagaatttatcaaaaaactgttagaaataataaatgaattcaataaggttgcaggatacaaatcaacatataaaaattatttccatacactaacaaca----atctaaaaaagaaatcaagaaaacaaccccacttacaatagctac-aaaaaaaagaaaaataacatacttaggaattaacataaccaaggaggttaaagatttgtacacaaaaaaa-ctataaagcattgattaaagtaattgaaaaagacacaaataattggaaaaacatcctatggatatatcctgcgaattggaagaattaatattgttaaaacgttcatgctattcaaagtaatctatagagtcagcataatctcatcaaaatatcgatgacatgtttcacagaaatgggaaaaaatcctataattctatggaact-aaaaaataacccaagtagccaaagcaatcttgcaaaaaatgaacaaagctgcaggtattatactacctgatttgaaaatacactccaaagctaaagcgattaagacagcatggtactggcataaaaacagacagaaagaccaatggaaaaaaataaagaactcagaaataaatgtatgcatttacagtccattgatttttgacaaaagtgccaatagcacacaatggagaaaagacagttccttcaacaactaatgttggaacaattggatatttgcatgccagtagaatgaaattggacccttatctcacacaatatttttt-ttaaaaa-ctgaaaatggattaaagacatttggattaaatgtgtaatttgaaattgtaaaaatgctagaagaaaatattggggaaaaagttccatgacattgatctgggaaagactttttggatatgaccttgaaagtactggcaataaagccaaaaagagacaattttgactacatcaaacaaaaatgcttcagcacagccaagcgaacaatcaactgagtgaagagacaacctttgtaattggccaagcacacatctgttaagaggttactattcaaaatatatattacaaataacccaattaaataaaacaaataacctggtt-----acgatcaaatgacctggagagacatttctcagaagaagacatgcaaatggccaacaggtatatgaaaaaatactaaattaatagtcagcagagaaatgcaaatgaaaaccacaatgagatataaccttatatctgttagaataattaatattaaaaagacaaaaggtaacacatgctgatgaggatgtcaagaaaaaggaactcttccgcactgttgatgcaaatgtgagtaagtatagccattatagaaaa-tagtatgaaagttctttaaaaaattaaaaataaaaccaccatatgatcaaggaatcccattacttggtatatatccaaggaaatgaaatcagcatatcaaagaaatatgtgcactccaatgtttattgcagcaccattcataatagccaagacatggaatcaacctaagtgttcatcagcggatgaatggataaataaaata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5624172 1530 +   6154872 actataaagaatttatcaaaaaactgttaggaataataaatgaattcaataaggttgcaggatacaaatcaacatataaaaattatttccatacactaacaacaaactatctaaaaaagaaatcaagaaaacaaccccacttacaatagctac-aaaaaaaagaaaaataacatacttaggaattaacataaccaaggaggttaaagatttgtacacaaaaaaa-ctataaagcattgattaaagtaattgaaaaagacacaaataattggaaaaacatcctatggatatatcctgctaattggaagaattaatattgttaaaaggttcatgctattcaaagtaatctacagagtcagcataatctcatcaaaatatcgatgacatgtttcacagaaatgggaaaaaatcctataattctatggaactaaaaaaataacccaagtagccaaagcaatcttgcaaaaaacgaacaaagctgcaggtattatactacctgatttgaaaatacactccaaagctagagcaattaagacagcatggtactggcataaaaacagacagaaagaccaatggaaaaaaataaagaactcagaaataaatgtatgcatttacagtccattgatttttgacaaaagtgccaatagcacacaatggagaaaagacagttccttcaacaactaatgttggaacaattggatatttgcatgccagtagaatgaaattggacccttatctcacacaatatttttcaaaaaaaa-ctgaaaatggattaaagacatttggattaaatgtgtaatttgaaattgtaaaaatactagaagaaaatattggggaaaaacttccatgacattgatctgggaaagactttttggatataaccttgaaagtactggcaataaagccaaaaagagacaattttgactacatcaaacaaaaatgcttcagcacagccaagcgaacaatcaactgagtgaagagacaacctttgtaatcggccaagcacacatccgttaagaggttactattcaaaatatgtattacaaataacccaattaaagaaaacaaataacctagtt-----acaatcaaatgacctgaatagacatttctcagaagaagacatgcaactggccaacaggtatatgacaaaatactaaattaacagtcagcagagaaatgcaaatgaaaaccacaatgagatataaccttatatctgttagaataattaatattaaaaagacaaaaggtaacacatgctggtgaggatgtcaagaaaaaggaactcttccacactgttgatgcgaatgtgagtaagtatagccattatagaaaa-tagtatgaaagttctttaaaaaattaaaaataaaaccaccatatgatcaaggaatcccattacttggtatatatccaaggaaatgaaatcagcatatcaaagaaatatgtgcactccaatgtttattgcagcaccattcataatagccaagacatggaatcaacctaagtgttcatcagcggatgaatggataaataaaata
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29852218 1513 + 172585720 actataaagaatttatccaaaagctgttagaaataataaatgaattcaataaacttgcaggatacaaatcaacatataaaaattatttccatacactaacaacaaactatccaaaaaagaaatcaagaaagcaaccccacttacaatagctacaaaaaaaaagaaaaataacatacttaggaattaacatagccaaggaggttaaagatctgtatccaaaaaaagctatgcagcattgattaaagtaattg-aaaagacacaaataattggaaaaa-atcctataaatatatcctatgactttgaaggattaatatcaacaaaattttcatgctattcaaagtgatctacagagtcagcataagctcatcaaaatatcgatgacatgtttcacagaaataggaaaaaatcctataattctatggaact-aaaaaataacccaagtagccaaagcaatcttgcaaaaaatgaacagagctgcaagtaatatactacctgatttgaaaatatactccaaagctagagtgattaagacagcatggtactggcataaaaacagacacaaagactgatggaaaaaaataaagaactaagaaataaatatatgcatttacagtccattgatttttgacaaaagtgccaataacacactatggagaaaagacagttccttcaacaactaatgttggaacaattgggtattcgcatgccagtagaatgaaattggacccttatctcacagtatattaa---aaaaaaa-ctgaaaatggattaaagaagtttggattaaatgtgtaacccgaaattgtaaaaatactagaagaaaatattggggaaaaagttccacgacactgatctgggaaggactttttggatatgaccttgaaaatactggcaataaaaccaaaaagagacaa-tttgactacatcaaacaaaaatgctttaacacagtcaagtgaacaattaacagagtgaagagacaacctttgtaatcagccaagcacacatctgttaagaggttactattcaaaatatacattacaaataacccaattaaagaaaacaaataacctagttaaaaaatgatcaaatgacct-------------tcaaaagaagacatgcaaatggccaacaggtatatgaaaaaatactaaattaat----agcagagaaatgcaaatgaaaacaacaatgagatataatcttatatctgttagaataattaatatt-aaaagacaaaagataacacatgctggtgaggatgtcaagaaaacggaactcttccacactgttggtgggaatgtgaataagtatagccattatagaaaagtagtatgaaagttcttcaaaaaattaaaaataaaaccaccatatgatcaaggaatcccattacttagtatatatccaaggaaatgaaatcaacgtatcaaagaaatatctgcactccaatgtctattgcagcaccattcataatagccaaggcatggaatcaacctaagtgttcatcaatggatgaatggataaataaaata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29515191 1513 - 170955103 actataaagaatttatccaaaagctgttagaaataataaatgcattcaataaacttgcaggatacaaatcaacatataaaaattatttccatacactaacaacaaactatccaaaaaagaaatcaagaaagcaaccccacttacaatagctacaaaaaaaaagaaaaataacatacttaggaattaacatagccaaggaggttaaagatctgtatccaaaaaaagctatgcagcattgattaaagtaattg-aaaagacacaaataattggaaaaa-atcctataaatatatcctatgactttgaaggattaatatcaacaaaattttcatgctattcaaagtaatctacagagtcagcataagctcatcaaaatatcgatggcatgtttcacagaaataggaaaaaatcctataattctatggaact-aaaaaataacccaagtagccaaagcaatcttgcaaaaaatgaacagagctgcaagtaatatactacctgatttgaaaatatactccaaagctagagtgattaagacagcatggtactggcataaaaacagacacaaagactgatggaaaaaaataaagaactaagaaataaatatatgcatttacagtccattgatttttgacaaaagtgccaataacacactatggagaaaagacagttccttcaacaactaatgttggaacaattgggtattcgcatgccagtagaatgaaattggacccttatctcacagtatattaa---aaaaaaa-ctgaaaatggattaaagaagtttggattaaatgtgtaacccgaaattgtaaaaatactagaagaaaatattggggaaaaagttccacgacactgatctgggaaggactttttggatatgaccttgaaaatactggcaataaaaccaaaaagagacaa-tttgactacatcaaacaaaaatgctttaacacagtcaagtgaacaattaacagagtgaagagacaacctttgtaatcagccaagcacacatctgttaagaggttactattcaaaatatacattacaaataacccaattaaagaaaacaaataacctagttaaaaaatgatcaaatgacct-------------tcaaaagaagacatgcaaatggccaacaggtatatgaaaaaatactaaattaat----agcagagaaatgcaaatgaaaaccacaatgagatataatcttatatctgttagaataattaatatt-aaaagacaaaagataacacatgctggtgaggatgtcaagaaaacggaactcttccacactgttggtgggaatgtgagtaagtatagccattatagaaaagtagtatgaaagttcttcaaaaaattaaaaataaaaccaccatatgatcaaggaatcccattacttagtatatatccaaggaaatgaaatcaacgtatcaaagaaatatctgcactccaatgtctattgcagcaccattcataatagccaaggcatggaatcaacctaagtgttcatcaatggatgaatggataaataaaata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2501685 1512 -   2996164 actataaagaatttatccaaaagctgttagaaataataaatgaattcaataaacttgcaggatacaaatcaacatataaaaattatttccatacactaacaacaaactatccaaaaaagaaatcaagaaagcaaccccacttacaatagctac-aaaaaaaagaaaaataacatacttaggaattaacatagccaaggaggttaaagatctgtatccaaaaaaagctatgcagcattgattaaagtaattg-aaaagacacaaataattggaaaaa-atcctataaatatatcctatgactttgaaggattaatatcaacaaaattttcatgctattcaaagtaatctacagagtcagcataagctcatcaaaatatcgatggcatgtttcacagaaataggaaaaaatcctataattctatggaact-aaaaaataacccaagtagccaaagcaatcttgcaaaaaatgaacagagctgcaagtaatatactacctgatttgaaaatatactccaaagctagagtgattaagacagcatggtactggcataaaaacagacacaaagactgatggaaaaaaataaagaactaagaaataaatatatgcatttacagtccattgatttttgacaaaagtgccaataacacactatggagaaaagacagttccttcaacaactaatgttggaacaattgggtattcgcatgccagtagaatgaaattggacccttatctcacagtatattaa---aaaaaaa-ctgaaaatggattaaagaagtttggattaaatgtgtaacccgaaattgtaaaaatactagaagaaaatattggggaaaaagttccacgacactgatctgggaaggactttttggatatgaccttgaaaatactggcaataaaaccaaaaagagacaa-tttgactacatcaaacaaaaatgctttaacacagtcaagtgaacaattaacagagtgaagagacaacctttgtaatcagccaagcacacatctgttaagaggttactattcaaaatatacattacaaataactcaattaaagaaaacaaataacctagttaaaaaatgatgaaatgacct-------------tcaaaagaagacatgcaaatggccaacaggtatatgaaaaaatactaaattaat----agcagagaaatgcaaatgaaaaccacaatgagatataatcttatatctgttagaataattaatatt-aaaagacaaaagataacacatgctggtgaggatgtcaagaaaacggaactcttccacactgttggtgggaatgtgaataagtatagccattatagaaaagtagtatgaaagttcttcaaaaaattaaaaataaaaccaccatatggtcaaggaaccccattacttagtatatatccaaggaaatgaaatcaacgtatcaaagaaatatctgcactccaatgtctattgcagcaccattcataatagccaaggcatggaatcaacctaagtgttcatcaatggatgaatggataaataatata
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     247805 1461 +    766320 actataaagaatttatccaaaaactgttagaaataataaatgaattcaataaactggcaggatacaaatcaacatataaaaattatttccatacactaacaacaaactatccaaaaaagaaatcaagaaagcaaccccacttacaatagctac-aaaaaaaagaaaaataacatacttaggaattaacatagccaaggaggttaaagatctgtatccaaaaaaagctatacagcattgattaaagtacttgaaaaagacacaaataattggaaaaa-atcctataaatatatcctatgactttgaaggattaatatcatcaaaattttcatgctattcaaagtaatctacagagtcagcataagctcatcaaaatatcgatggcatgtttcacagaaataggaaaaaatcctataattctatgaaact-aaaaaataacccaagtagccaaagcaatcttgcaaaaaatgaacagagctgcaagtaatatactacctgatttgaaaatatactccaaagctagagtgattaagacagcatggtactggcataaaaacagacacaaagactgatggaaaaaaataaagaaatgataaataaatatatgcatttacagtccattgatttttgacaaaagtgccaataacacactatggagaaaagacagttccttcaacaactaatgttggaacaattgggtattcgcatgccagtagaatgaaattggacccttatctcacagtatattaa---aaaaaaacctgaaaatggattaaagacgtttggattaaatgtgtaacccgaaattgtaaaaatactagaagaaaatattgggtaaata----------------ttaggaaagactttttggatatgaccttgaaaatactggcaataaaacc-aaaagagacaa-tttgactatatcaaacaaaaatgctttaacacagtcaagtgaacaatgaacagagtgaagagacaacctttgtattcggccaagcacacat------------------------------------ataacccaattaaagaaaacaaataacctagttaaaaaatgatcaaatgacct-------------tcaaaagaagacatgcaaatggccaacaggtacatgaaaaaatactaaattaat----agctgagaaatgcaaatgaaaaccacaatgaaatataatcttatatctgttagaataattaatatt-aaaaaacaaaagataacacatgctggtgaggatgtcaagaaaacggaactcttccacactgttggtgggaatgtgagtaagtatagccattatagaaaagtagtatgaaagttcttcaaaaaattaaaaataaaaccaccatatgatcaaggaatcccattacttagtatatatccaaggaaatgaaatcaatgtatcaaagaaatatctgcactccaatgtctattgcagcaccattcataatagcgaaggcatggaatcaacctaagtgttcatcaatggatgaatggataaataaaata
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     231951 1485 -    352859 actataaagaatttatccaaaaactgttagaaataataaatgaattcaataaactggcaggatacaaatcaacatataaaaattatttccatacactaac----aactatccaaaaaagaaatcaagaaagcaaccccacttacaatagctac-aaaaaaaagaaaaataacatacttaggaattaacatagccaaggaggttaaagatctgtatccaaaaagagctatacggcattgattaaagtacttgaaaaagacacaaataattggaaaaa-atcctataaatatatcctatgactttgaaggattaatatcatcaaaattttcatgctattcaaagtaatctacagagtcagcataagctcatcaaaatatcgatggcatgtttcacagaaataggaaaaaatcctataattctatgaaact-aaaaaataacccaagtagtcaaagcaatcttgcaaaaaatgaacagagctgcaagtaatatactacctgatttgaaaatatactccaaagctagagtgattaagacagcatggtgcaggcataaaaac--------agactgatggaaaaaaataaagatatgataaataaatatatgcatttacagtccattgatttttgacaaaagtgccaataacacactatggagaaaagacagttccttcaacaactaatgttggaacaattgggtattcgcatgccagtagaatgaaattggacccttatctcacagtatattaa---aaaaaaacctgaaaatggattaaagacgtttggattaaatgtgtaacccgaaattgtaaaaatactagaagaaaatattgggtaaata----------------ttgggaaagactttttggatatgaccttgaaaatactggcaataaaacc-aaaagagacaa-tttgactatatcaaacaaaaatgctttaacacagtcaagtgaacaatgaacagagtgaagagacaacctttgtattcggccaagcacacatctgttaagaggttactattcaaaatatacattacaaataacccaattaaagaaaacaaataacctagttaaaaaatgatcaaatgacct-------------tcaaaagaagacatgcaaatggccaacaggtacatgaaaaaatactaaattaat----agctgagaaatgcaaatgaaaaccacaatgagatataatcttatatctgttagaataattaatatt-aaaaaacaaaagataacacatgctggtgaggatgtcaagaaaacggaactcttccacactgttggtgggaatgtgagtaagtatagccattatagaaaagtagtatgaaagttcttcaaaaaattaaaaataaaaccaccatatgatcaaggaatcccattacttagtatatatccaaggaaatgaaatcaacgtatcaaataaatatctgcactccaatgtctattgcagcaccattcataatagccaaggcatggaatcaacctaagtgttcatcaatggatgaatggataaataaaata
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570741           446734 37259 +   1532071 I
e proCoq1.NW_012152574v1     361794 11702 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          1995182 12030 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e chlSab2.chr17            28757878 1561 -  71996105 I

a score=1594405.000000
s hg38.chr6_GL000254v2_alt   612580 431 +   4827813 tggcatatgtacacaatagaatactattcagtcttaaaaa-agaagcaaattctgtcatttgtgacaacatggatgaacctggagaacgttattttaagtgaagtaagctaggaacagaaagacaaatgctac---atgatctcacat-tatgcagaatttttaaaagttgaaatcatagaaatagagagtagaattgtggttactaggggctgggaggggatgtggtggggagatgttggtaaatggatacaatatttcagttatataggagaaataagttcaagagatctattgtacaacatggtgactgtagttaat---aacgttttgtattcttgaaaattgccaaaagaataga----tgagttttctcaccac------aaaaaagtatgtgaggtattgcatacgttgattagc----------catttcacaaggtatacatatttcaag
s panTro5.chr6             29584621 441 + 175400573 tggcatatatacacaatagaatactattcagtcttaaaaa-agaagcaaattctgtcatttgtgacaacatggatgaacctggagaacgttattttaagtgaagtaagctaggaacagaaagacaaatgctac---atgatctcacat-tatgcagaatttttaaaagttgaagtcatagaaatagagagtagaattgtggttactaggggctgggaggggatgtggtggggagatgttggtaaatggatacaatatttcagttatataggagaaataagttcaagagatctattgtacaacatggtgactgtagttaat---aacgttttgtattcttgaaaattgccaaaagaataga----tgagttttctcaccac------aaaaaggtatgtgaggtattgcatacgtttattagctcggtttagccatttcacaaggtatacatatttcaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29822853 441 + 173848474 tggcatatatacacaatagaatactattcagtcttaaaaa-agaagcaaattctgtcatttgtgacaacatggatgaacctggagaacgttattttaagtgaagtaagctaggaacagaaagacaaatgctac---atgatctcacat-tatgcagaatttttaaaagttgaagtcatagaaatagagagtagaattgtggttactaggggctgggaggggatgtggtggggagatgttggtaaatggatacaatatttcagttatataggagaaataagttcaagagatctattgtacaacatggtgactgtagttaat---aacgttttgtattcttgaaaattgccaaaagaataga----tgagttttctcaccac------aaaaaggtatgtgaggtattgtatacgttgattagctcggtttagccatttcacaaggtatacatatttcaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5625702 443 +   6154872 tggcatgtgtacacaatagaatactattcagtcttaaaaa-agaagcaaattctgtcatttgtgacaacatggatgaacctggagaacgttattttaagtgaagtaagctaggaacagaaagacaaatgctacatgatgatctcacat-tatgcagaatttttaaaagttgaagtcatagaaatagagagtagaattgtggttactaggggctgggaggggatgtggtggggagatgttggtaaatggatacaatatttcagttatataggagaaataagttcaagagatctgttgtacaacatggtgactgtagttaat---aacgttttgtattcttg-aaattgccaaaagaataga----tgagttttctcaccac------aaaaaagtatgtgaggtattgcatacgttgattagctcggtttagccatttcacaaggtatacatatttcaag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29853731 440 + 172585720 tggcatatgtgcacaatagaatactattcaatttttaaaa---aagcaaattctgtcatttgtgacaacatggatgaacctggagaacattattttaagtgaaataagctaggaacagaaagacaaatgctac---atgacctcacatatatgcagaatttttaaaagttgaagtcgtagaaatagagagtagaattgtgggtactaggggctgggaggggatgtggtggggagatgttggtaaatggatacaatatttcagttatataggagaaataagttcaagagatctattgtacaacgtggtgactgtagttaat---aacgttttgtattcttgaaaactgctaaaagaataga----tgagtcttctcaccac------aaaaaagtatgtgaggtattgcatatgttgattagcttggtttagctatttcacaaggtatacgtatttcaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29516704 440 - 170955103 tggcatatgtgcacaatagaatactattcaatttttaaaa---aagcaaattctgtcatttgtgacaacatggatgaacctggagaacattattttaagtgaaataagctaggaacagaaagacaaatgctac---atgacctcacatatatgcagaatttttaaaagttgaagtcgtagaaatagagagtagaattgtgggtactaggggctgggaggggatgtggtggggagatgttggtaaatggatacaatatttcagttatataggagaaataagttcaagagatctattgtacaacgtggtgactgtagttaat---aacgttttgtattcttgaaaactgctaaaagaataga----tgagtcttctcaccac------aaaaaagtatgtgaggtattgcatatgttgattagcttggtttagctatttcacaaggtatacgtatttcaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2503197 440 -   2996164 tggcatatgtgcacaatagaatactattcaatttttaaaa---aagcaaattctgtcatttgtgacaacatggatgaacctggagaacattattttaagtgaaataagctaggaacagaaagacaaatgctac---atgacttcacatatatgcagaatttttaaaagttgaagtcgtagaaatagagagtagaattgtgggtactaggggctgggaggggatgtggtggggagatgttggtaaatggatacaatatttcagttatataggagaaataagttcaagagatctattgtacaacgtggtgactgtagttaat---aacgttttgtattcttaaaaactgctaaaagaataga----tgagtcttctcaccac------aaaaaagtatgtgaggtattgcatatgttgattagcttggtttagctatttcacaaggtatacgtatttcaag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     249266 436 +    766320 tggcatatgtgcacaatagaataccattcaatctttaaaa---aagcaaattctgtcatttgtgacaacatggatgaacctggagaacattattttaagtgaaataagctaggaacagaaagacaaatgctac---atgacctcacatatatgcagaatttttaaaagttgaagtcgtagaaatagagagtagaattgtgggtactaggggctgagaggggatgtggtggggagatgttggtaaatggatacaata---caact-tatgggagaaataagttcaagagatctattgtacaacgtggtgactgtagttaac---aacgttttgtattcttgaaaactgctaaaagaataga----tgagtcttctcaccac------aaaaaagtatgtgaggtattgcatatgttgattagcttggtttagctatttcacaaggtatacgtatttcaag
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     233436 436 -    352859 tggcatatgtgcacaatagaataccattcaatctttaaaa---aagcaaattctgtcatttgtgacaacatggatgaacctggagaacattattttaagtgaaataagctaggaacagaaagacaaatgctac---atgacctcacatatatgcagaatttttaaaagttgaagtcgtagaaatagagagtagaattgtgggtactaagggctgggaggggatgtggtggggagatgttggtaaatggatacaata---caact-tatgggagaaataagttcaagagatctattgtacaacgtggtgactgtagttaat---aacgttttgtattcttgaaaactgctaaaagaataga----tgagtcttctcaccac------aaaaaagtatgtgaggtattgcatatgttgattagcttggtttagctatttcacaaggtatacgtatttcagg
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     373496 455 +    730504 tggcatatatacacaaagcaatactactcatccttaaaaacagaagaaaatcttgtcatttgtgacaacatagatgggcctgaaggacattatgctaaagaaaataaattaggaacagaaagacaaatactac---acgatctcacttatatgtggaatttttaaaaattgcactcatagaactagagagtagaatggtggttactaggggctgggaggtg-tgaggtgaggcgatgttggtaaatggatacaagatttccgttacatataagagataatttcaagagatttattgtacagcatgatgactctagttaacaagaatgtatagtattattgaaaatcactaggagaatagatttttaagtattcccaccacagaaaaaaaaaattacttgaggtattgtatatgttaattagctcagtttagccactccacaatgtatacacattttaaa
i proCoq1.NW_012152574v1   I 11702 C 0
e dasNov3.JH570741           446734 37259 +   1532071 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          1995182 12030 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e chlSab2.chr17            28757878 1561 -  71996105 I

a score=52760.000000
s hg38.chr6_GL000254v2_alt   613011 12 +   4827813 acatcatgttgt
s panTro5.chr6             29585062 12 + 175400573 acatcatgttgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29823294 12 + 173848474 acatcatgttgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5626145 12 +   6154872 acatcatgttgt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29854171 12 + 172585720 gcatcatgttgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29517144 12 - 170955103 gcatcatgttgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2503637 12 -   2996164 gcatcatgtggt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     249702 12 +    766320 gcatcatgttgt
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     233872 12 -    352859 gcgtcatgttgt
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     373951 12 +    730504 acatcatgctgt
i proCoq1.NW_012152574v1   C 0 I 45
s otoGar3.GL873742          2007212 12 -   2232465 acaccatgttgt
i otoGar3.GL873742         I 12030 C 0
e dasNov3.JH570741           446734 37259 +   1532071 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e chlSab2.chr17            28757878 1561 -  71996105 I

a score=124232.000000
s hg38.chr6_GL000254v2_alt   613023 36 +   4827813 --acatgataa----atataatttttatttgccaactATAAC
s panTro5.chr6             29585074 36 + 175400573 --acatgataa----atataatttttatttgccaactATAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29823306 36 + 173848474 --acatgataa----atataatttttatttgccaactATAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5626157 36 +   6154872 --acatgataa----atataatttttatttgccCACTATAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29854183 36 + 172585720 --acatgataa----atataatttttatttgccaTCTATAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29517156 36 - 170955103 --acatgataa----atataatttttatttgccaTCTATAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2503649 36 -   2996164 --acatgataa----atataatttttatttgccaTCTATAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     249714 36 +    766320 --acatgataa----atataatttttatttgccaTCTATAAC
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     233884 36 -    352859 --acttgataa----atataatttttatttgccaTCTATAAC
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2007224 41 -   2232465 atacacaataaatgcatataatctttatttatcaattATAA-
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570741           446734 37259 +   1532071 I
e proCoq1.NW_012152574v1     373963 45 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e chlSab2.chr17            28757878 1561 -  71996105 I

a score=305419.000000
s hg38.chr6_GL000254v2_alt   613059 80 +   4827813 AATAAACGAATAATAGTG-TATGACAGGT-AAAAAAAGATTGTAAGCAAATTA---------TTTTCTTATATTACAAAGAAAAACAAACC
s panTro5.chr6             29585110 80 + 175400573 AATAAACGAATAATAGTG-TATGACAGGT-AAAAAAAGATTGTAAGCAAATTA---------TTTTCTTATATTACAAAGAAAAACAAACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29823342 80 + 173848474 AATAAACGAATAATAGTG-TATGACAGGT-AAAAAAAGATTGTAAGCAAATTA---------TTTTCTTATATTACAAAGAAAAACAAACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5626193 80 +   6154872 AATAAACGAATAATAGTG-TATGACAGGT-AAAAAAAGATTGTAAGCAAATTA---------TTTTCTTATATTACAAAGAAAAACAAACC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29854219 79 + 172585720 AATAAACAAATAATAGTG-TATGACAGGTAAAAAAAAGATTATAAGCAAATTA---------TTTTCTTATATTACAAAGAAAAACAAG--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29517192 79 - 170955103 AATAAACAAATAATAGTG-TATGACAGGTAAAAAAAAGATTATAAGCAAATTA---------TTTTCTTATATTACAAAGAAAAACAAG--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2503685 78 -   2996164 AATAAACAAATAATAGTG-TACGACAGGT-AAAAAAAGATTACAAGCAAATTA---------TTTTCTTATATTACAAAGAAAAACAAG--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     249750 78 +    766320 AATAAACAAATAATAGTG-TACGACAGGT-AAAAAAAGATTATAAGCAAATTA---------TTTTCTTATAATACAAAGAAAAACAAG--
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     233920 78 -    352859 AATAAACAAATAATAGTG-TATGACAGGT-AAAAAAAGATTATAAGCAAATTA---------TTTTCTTATAATACAAAGAAAAACAAG--
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     374008 89 +    730504 AATAAATGAATAATAGGGATACTACAGGT--AAAAAAGACTGTAAGTAAATTATTATTTTCTTTTTCTTATATTACAAAGAAAAACAAACC
i proCoq1.NW_012152574v1   I 45 I 186
s otoGar3.GL873742          2007265 87 -   2232465 --TTAATGTATAATAGTGATACTACAGAT--AAAAAAGATCACAAGAAAACTATTATTTTCTTTTTATTATGTTACAAAGAAAAACAAACC
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570741           446734 37259 +   1532071 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e chlSab2.chr17            28757878 1561 -  71996105 I

a score=692826.000000
s hg38.chr6_GL000254v2_alt   613139 197 +   4827813 TTTGATTCCTTTGATTTAAAACCTCATCAGTTTTTAACTTCCAAATCCACAGGTGTACCTACCATTTCTGCCTTCATTTCTCTAACTGTGGTGAACTCCTCCGGCTATGCTCAGTATGGTAACTGCTGCTGCTTTCTCAGGTGTATAATGCCAATGACTATTGGCTCCCTTTTCTGTTTCTTTATCCTCACTTCGCA
s panTro5.chr6             29585190 197 + 175400573 TTGGATTCCTTTGATTTAAAACCTCATCAGTTTTTAACTTCCAAATCCACAGGTGTACCTACCATTTCTGCCTTCATTTCTCTAACTGTGGTGAACTCCTCCGGCTATGCTCAGTATGGTAACTGCTGCTGCTTTCTCAGGTGTACAATGCCAATGACTATTGGCTCCCTTTTCTGTTTCTTTATCCTCACTTCGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29823422 197 + 173848474 TTGGATTCCTTTGATTTAAAACCTCATCAGTTTTTAACTTCCAAATCCACAGGTGTACCTACCATTTCTGCCTTCATTTCTCTAACTGTGGTGAACTCCTCCGGCTATGCTCAGTATGGTAACTGCTGCTGCTTTCTCAGGTGTACAATGCCAATGACTATTGGCTCCCTTTTCTGTTTCTTTATCCTCACTTCGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5626273 197 +   6154872 TTTGATTCCTTTGATTTAAAACCTCATCAGTTTTTAACTTCCAAATCCACAGGTGTATCTACCATTTCTGCCTTCATTTCTCTAATTGTGGTGAACTCCTCCGGCTATGCTCAGTATGGTAACTGCTGCTGCTTTCTCAGGTGTATAATGCCAATGACTATTGGCTCCCTTTTCTGTTTCTTTATCCTCACTTCGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29854298 190 + 172585720 -------CCTTTGATTTAAAACCTCATCAGTTTTTAGCTTCCAAATCCACAGGAGTACCTACCATTTCTGCCTTCATTCCTCTAACTGTAGTGAACTCCTCCGGCTATGCTCAGTATGGTAACTGTTGCTGCTTTCTCAGGTGTATAATGCCAATGACTATTGGCTCCCTTTTCTGTTTCTTTATCCACACTTCGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29517271 190 - 170955103 -------CCTTTGATTTAAAACCTCATCAGTTTTTAGCTTCCAAATCCACAGGAGTACCTACCATTTCTGCCTTCATTCCTCTAACTGTGGTGAACTCCTCCGGCTATGCTCAGTATGGTAACTGTTGCTGCTTTCTCAGGTGTATAATGCCAATGACTATTGGCTCCCTTTTCTGTTTCTTTATCCACACTTCGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2503763 190 -   2996164 -------CCTTTGATTTAAAACCTCATCAGTTTTTAGCTTCCAAATCCACAGGAGTACCTACCATTTCTGCCTTCATTCCTCTAACTGTGGTGAACTCCTCCGGCTATGTTCAGTATGGTAACTGTTGCTGCTTTCTCAGGTGTATAATGCCAATGACTATTGGCTCCCTTTTCTGTTTCTTTATCCACACTTCGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     249828 190 +    766320 -------CCTTTGATTTAAAACCTCATCAGTTTTTAGCTTCCAAATCCACAGGAGTACCTACCATTTCTGCCTTCATTCCTCTAACTGTGGTGAACTCCTCCGGCTATGCTCAGTATGGTAACTGTTGCTGCTTTCTCAGGTGTATAATGCCAATGACTATTGGCTTCCTTTTCTGTTTCTTTATCCACACTTCGCA
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     233998 190 -    352859 -------CCTTTGATTTAAAACCTCATCAGTTTTTAGCTTCCAAATCCACAGGAGTACCTACCATTTCTGCCTTCATTCCTCTAACTGTGGTGAACTCCTCCGGCTATGCTCAGTATGGTAACTGTTGCTGCTTTCTCAGGTGTATAATGCCAATGACTATTGGCTCCCTTTTCTGTTTCTTTATCCACACTTCGCA
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2007352 174 -   2232465 ---------CTTAATCAAGAACCAGATCAG-TTTTAACTTCCAAATACA-------------CATTTTCTCTTTCATTTCTATCACTGAGGTGAGTTCCTCCATCTGTTCTTGGTATGGTCACTGTTGCTGTTTCCTTAAGTGTATAATACCATTGATTATTGGATCTTTTTCTTCTTTTTTTATTCACAGTTCTTG
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570741           446734 37259 +   1532071 I
e proCoq1.NW_012152574v1     374097 186 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e chlSab2.chr17            28757878 1561 -  71996105 I

a score=339604.000000
s hg38.chr6_GL000254v2_alt   613336 74 +   4827813 CAGTTCTTACTGTCCTTCCTTTTCTGTTTTGAGAAAACAGGGCTCAAATTGTCTGTGAACCTCTCTAGTGGTAT
s panTro5.chr6             29585387 74 + 175400573 CAGTTCTGACTGTCCTTCCTTTTCTGTTATGAGAAAACAGGGCTCAAATTGTCTGTGAACCTCTCTAGTGGTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29823619 74 + 173848474 CAGTTCTGACTGTCCTTCCTTTTCTGTTATGAGAAAACAGGGCTCAAATTGTCTGTGAACCTCTCTAGTGGTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5626470 74 +   6154872 CAGTTCTGACTGTCCTTCCTTTTCTGTTATGAGAAAACAGGGCTCAAATTGTCTGTGAACCTCTCTAGTGGTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29854488 74 + 172585720 CAGTTCTGACTGTCCTTCCTTTTCTGTTATGAGAAAACAGGGCTCAAATTGTCTGTGAACCTCTCTAGTGGTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29517461 74 - 170955103 CAGTTCTGACTGTCCTTCCTTTTCTGTTATGAGAAAACAAGGCTCAAATTGTCTGTGAACCTCTCTAGTGGTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2503953 74 -   2996164 CAGTTCTGACTGTCCTTCCTTTTCTGTTATGAGAAAACAGGGCTCAAATTGTCTATGAACCTCTCTAGTGGTAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     250018 74 +    766320 CAGTTCTGACTGTCCTTGCTTTTCTGTTATGAGAAAACAGGGCTCAAATTGTCTGTGAACCTCTCTAGTGGTAT
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     234188 74 -    352859 CAGTTCTGACTGTCCTTGCTTTTCTGTTATGAGAAAACAGGGCTCAAATTGTCTGTGAACCTCTCTAGTGGTAT
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     374283 74 +    730504 CAGTTCTTATTGTCCTTTCTATTCTGTTCCAAGAAGAAAGAGCTCAAATTATCTGCCAGCCTCTCTAGTGGTAT
i proCoq1.NW_012152574v1   I 186 I 185
s otoGar3.GL873742          2007526 74 -   2232465 TAGTTCTTATTGTCCTTCCTATTCTGTTTTGACAAGAAAGAGCTCAAATTGTCTGTGAACCTCTCTAGTGGCAT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570741           446734 37259 +   1532071 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e chlSab2.chr17            28757878 1561 -  71996105 I

a score=20007.000000
s hg38.chr6_GL000254v2_alt   613410 6 +   4827813 tgaaat
s panTro5.chr6             29585461 6 + 175400573 tgaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29823693 6 + 173848474 tgaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5626544 6 +   6154872 tgaaat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29854562 6 + 172585720 tgaaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29517535 6 - 170955103 tgaaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2504027 6 -   2996164 tgaaat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     250092 6 +    766320 tgaaat
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     234262 6 -    352859 tgaaat
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2007600 6 -   2232465 GCAAGT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570741           446734 37259 +   1532071 I
e proCoq1.NW_012152574v1     374357 185 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e chlSab2.chr17            28757878 1561 -  71996105 I

a score=1752393.000000
s hg38.chr6_GL000254v2_alt   613416 572 +   4827813 gggaaaagttcccttgtccccctcgcagggcatgcgatggggatgtggctcgctttttcagggccccactgctcaaacaactaggggagcttacagacaggcagactgtggagctccaaccccatggcagtgtttaggggtgaatgtttgcagcttctgaagccccagtgggcgtgtgttacagggtgctcttaatttgctgtctacaggtggcttgtgttagcccaattagaccttctaccttgtc-cgaggacagagggctttctgtatcccagggtttcttgccttggtgtaccgggagaattagatcacacgtgggcttggagaattagtgtaaagctttattgagtggaagtagctctcaactgatgggggagccagaagggaaatggtcttcccctggagttgggccactc-ggccttgctctcctctgccgcggccaaactccacctcctcccaccagctgatggcctgctggtatgctggtgcctgtctgtgtgctcttctgcctgcgtgctcctcttgacatcctctcgaggaccagccgcttgcatcttctttcgccaatgtac
s panTro5.chr6             29585467 572 + 175400573 gggaaaagttcccttgtccccctcgcagggcatgcgatggggatgtggctcgctttttcagggccccactgctcaaacaactaggggagcttacagacaggcagactgtggagctccaaccccatggcagtgtttagaggtgaatgtttgcagcttctgaagccccagtgggcgtgtgttacagggtgctcttagtttgctgtctacaggtggcttgtgttagctcaattagaccttctaccttgtc-caaggacagagggctttctgtatcccagggtttcttgccttggtgtaccgggagaattagatcacacgtgggcttggagaattagtgtaaagctttattgagtggaagtagctctcaactgatgggggagccagaagggagatggtcttcccctggagttgggccactc-ggccttgctctcctctgccgcggccaaactccacctcctcccaccagctgatggcctgctggtatgctggtgcctgtctgtgtgctcttctgcctgcgtgctcctcttgacatcctctcgaggaccagctgcttgcatcttctttcgccaatgtac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29823699 572 + 173848474 gggaaaagttcccttgtccccctcgcagggcatgcgatggggatgtggctcgctttttcagggccccactgctcaaacaactaggggagcttacagacaggcagactgtggagctccaaccccatggcagtgtttagaggtgaatgtttgcagcttctgaagccccagtgggcgtgtgttacagggtgctcttagtttgctgtctacaggtggcttgtgttagctcaattagaccttctaccttgtc-caaggacagagggctttctgtatcccagggtttcttgccttggtgtaccgggagaattagatcacacgtgggcttggagaattagtgtaaagctttattgagtggaagtagctctcaactgatgggggagccagaagggagatggtcttcccctggagttgggccactc-ggccttgctctcctctgccgcggccaaactccacctcctcccaccagctgatggcctgctggtatgctggtgcctgtctgtgtgctcttctgcctgcgtgctcctcttgacatcctctcgaggaccagctgcttgcatctactttcgccaatgtac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5626550 540 +   6154872 gggaaaagttcccttgtccccctcgcagggcatgcgatggggatgtggctcgctttttcagggccccacttctcaaacaactaggggagcttacagacaggcaggctgtggagctccaaccccatggcagtgtttaggggtgaatgtttgcagcttctgaagccccagtgggcgtgtgttacagggtgctcttagtttgc--tctacaggtggcttgtgttagctcaattagaccttctacctcgtc-caaggacagagggctttctgtatcccagggtttcttgccttggtgtaccgggagaattagataacacgtgggcttggagaattagtgtaaagctttattgagtggaagtagctctcaactgatgggggagccagaagggagatggtcttcccctggagttgggccactt-ggccttgctctcctctgccgcggccagactccacctcctcccaccagttgatggcctgccggca------------------------------tgcgtgctcctcttgacatcctctcgaggaccagccgcttgcatcttctttcgccaatgtac
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29854568 572 + 172585720 gggaaaagttcgcttgtccccctcgcagggcatgcgatggggacgtggctcgctttttcagggccccgctgctcaaacatccagggaagcttacagacaggcagggtgtagaactccgaccccatggcagtgtctaggggtgaatgtttgcagcttctgaagccccagtgggcgtgtgttacagggtgctcttagtttgctgtctacaggtggctcgtgttagctcaattagaccttctaccttgtcgcaaggac--agggctttctgtatctcagggtttcttgccttggtgtacaggaagaattagaacacacgtgggcttggagaattagtgtaaaacttttttgagtagaagtagctctcagctgatgggggagccaaaagggagatggtcttcccctgaagttgggccacttgggctttgctgtcctctgtcgggtccaaactccacctcctcccaccagttgatggcctgccggcatgctggtgcctatgcatgcgctcttctgcctgcgttctcctctcgacatcctctcgaggaccagccgcttgcatcttcttccgccaacgtgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29517541 572 - 170955103 gggaaaagttcgcttgtccccctcgcagggcatgcgatggggacgtggctcgctttttcagggccccactgctcaaacatccagggaagcttacagacaggcaggttgtagaactccgaccccatggcagtgtctaggggtgaatgtttgcagcttctgaagccccagtgggcgtgtgttacaggatgctcttagtttgctgtctacaggtggctcgtgttagctcaattagaccttctaccttgtcgcaaggac--agggctttctgtatctcagggtttcttgccttggtgtacaggaagaattagaacacacgtgggcttggagaattagtgtaaaactttattgagtagaagtagctctcagctgatgggggagccagaagggagatggtcttcccctgaagttgggccacttgggccttgctgtcctctgtcggggccaaactccacctcctcccaccagttgatggcctgccggcatgctggtgcctatgcatgtgctcttctgcctgcgttctcctctcgacatcctctcgaggaccagccgcttgcatcttcttccgccaacgtgc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2504033 572 -   2996164 gggaaaagttcgcttgtccccctcgcagggcatgcgatggggatgtggctcgctttttcagggccccactgctcaaacatccagggaagcttacagacaggcaggttgtagaactctgaccccatggcagtgtctaggggtgaatgtttgcagcttctgaagccccagtgggc--gtgttacaggatgctcttagtttgctgtctataggtggcttgtgttagctcaatgagaccttctaccttgtcgcaaggacagagggctttctgtatctcagggtttcttgccttggtgtaccggaagaattagaacacacgtgggcttggagaattagtgtaaaactttattgagtagaagtagctctcagctgatgggggagccagaagggagatggtcttcccctgaagttgggccacttgggccttgctctcctctgccagggccaaactccaccttctcccaccagttgatggcctgccggcatgctggtgcctatccatgcgctcttctgcctgcgttctcctctcgacatcctctcgaggaccaaccgcttgcatcttcttccgccaacgtgc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     250098 574 +    766320 gggaaaagttcgcttgtccccctcgcagggcatgcgatggggatgtggctcgctttttcagggccccactgctcaaacatccagggaagcttacagacaggcaggttgtagaactccgaccccatggcagtgtctaggggtgaatgtttgcagcttctgaagcgccagtgggcgtgtgttacaggatgctcttagtttgctgtctataggtggcttgtgttagctcaattagaccttctaccttgtcgcaaggacagagggctttctgtatctcagggtttcttgccttggtgtaccggaaaaattagaacacacgtgggcttggagaattagtgtaaaactttattgagtagaagtagctctcagctgatgggggagccagaagggagatggtcttcccctgaagttcggccacttgggccttgctctcctctgccagggccaaactccacctcctcccaccagttgatggcctgccggcatgctggtgcctatccatgcgctcttctgcctgcgttctcctctcgacatcctctcgaggaccagcctcttgcatcttcttccgccaacgtgc
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     234268 566 -    352859 gggaaaagttcgcttgtccccctcgcagggcatgcgatggggatgtggctcgctttttcagggccccactgctcaaacatccagggaagcttacagacaggcaggttgtagaactccgacc--------gtgtctaggggtgaatgtttgcagcttctgaagcgccagtgggcgtgtgttacaggatgctcttagtttgctgtctataggtggcttgtgttagctcaattagaccttctaccttgtcgcaaggacagagggctttctgtatctcagggtttcttgccttggtgtaccggaaaaattagaacacacgtgggcttggagaattagtgtaaaactttattgagtagaagtagctctcagctgatgggggagccagaagggagatggtcttcccctgaagttcggccacttgggccttgctctcctctgccagggccaaacttcacctcctcccaccagttgatggcctgccggcatgctggtgcctatccatgcgctcttctgcctgcgttctcctctcgacatcctctcgaggaccagccgcttgcatcttcttccgccaacgtgc
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570741           446734 37259 +   1532071 I
e proCoq1.NW_012152574v1     374357 185 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2007606   0 -   2232465 C
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e chlSab2.chr17            28757878 1561 -  71996105 I

a score=1057960.000000
s hg38.chr6_GL000254v2_alt   613988 270 +   4827813 tcctctggacatctggccacctgtgtgtctgcctgctggggcctcgggtttttataggccaaggatgggggcatggtgggtcagggtggacttttgaaatgcaacatttgggcgaaaaagcaggagtgcctgtcctcacctaggtccgt-gggatggagccctagtcagggaacacaccttcctcta------------------cccagcacttctcttctccccttttgtatcatttaaagggaccacgttcttcccttcccagcactcccttatcaGTATGCTAGC
s panTro5.chr6             29586039 270 + 175400573 tcctctggacatctggccacctgtgtgtctgcctgctggggcctcgggtttttataggccaaggatgggggcatggtgggtcagggtggacttttgaaatgcaacatttgggcgaaaaagcaggagtgcctgtcctcacctaggtccgt-gggatggagccctagtcagggaacacaccttcctcta------------------cccagcacttctcttctccccttttgtatcatttaaagggaccacgttcttcccttcccagcactcccttatcaGTATGCTAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29824271 270 + 173848474 tcctctggacatctggccacctgtgtgtctgcctgctggggcctcgggtttttataggccaaggatgggggcatggtgggtcagggtggacttttgaaatgcaacatttgggcgaaaaagcaggagtgcctgtcctcacctaggtccgt-gggatggagccctagtcagggaacacaccttcctcta------------------cccagcacttctcttctccccttttgtatcatttaaagggaccacgttcttcccttcccagcactcccttatcaGTATGCTAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5627090 270 +   6154872 tcctctggacatctggccacctgtgtgtctgcctgctggggcctcgggtttttataggccaaggatggggacatggtgggtcagggtggacttttgaaatgcaacatttgggcgaaaaagcaggagtgcctgtcctcacctaggtccgt-ggggtggagccctagtcagggaccacaccttcctcta------------------cccagcacttctcttctccccttttgtatcatttaaagggaccacgttcttcccttcccagcactcccttatcaGTATGCTAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29855140 271 + 172585720 tcctctggacatctggacacctgtgtatctgcctgctggggcctcgggtttttataggccaaggatgggggcatggtgggtcagggtggtcttttcaaatgcaacatttgggcgaaaaagctgcagtgcctgtcctcacctgggtccatgggggtggagccctagtcaggcaccacaccttcctcta------------------cccagcacttctcttctccccttttgtatcatttaaagggacaacgttcttcccttcccagcactcccttatcaGTATGCTAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29518113 271 - 170955103 tcctctggacatctggacacctgtgtatctgcctgctggggcctcgggtttttataggccaaggatgggggcatggtgggtcagggtggtcttttcaaatgcaacatttgggcgaaaaagctgcagtgcctgtcctcacctgggtccatgggggtggagccctagtcaggcaccacaccttcctcta------------------cccagcacttctcttctccccttttgtatcatttaaagggacaacgttcttcccttcccagcactcccttatcaGTATGCTAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2504605 271 -   2996164 tcctctggacatctggacacctgtgtgtctgcctgctggggcctcgggtttttataggccaaggatgggggcatggtgggtcagggtggtcttttcaaatgcaacatttgggcgaaaaagcaggagtgcctgtcctcacctaggtccatgggggtggagccctagtcaggcaccacaccttcctcta------------------cccagcacttctcttctcccgttttgtatcatttaaaggggccacgctcttcccttcccagcactcccttagcaGTATGCTAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     250672 289 +    766320 tcctctggacatctggacacctgtgtgtctgcctgctggggcctcgggtttttataggccaaggatgggggcatggtgggtcagggtggtcttttcaaatgcaacatttgggcgagaaagcaggagtgcctgtcctcacctgggtccatgggggtggagccctagtcaggcaccacgccttcctctacccagcacttctcttctccccagcacttctcttctccccttttgtatcatttaaagggaccacgttcttcccttcccagcactcccttatcaGTATGCTAGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28759439 265 -  71996105 tcctctggacatctggtcacctgtgtgtctgcctgctggggcctcgggtttttataggccaaggatgggggcatggtgggtcagggtggtcttttcaaatgcaacctttgggcgaaaaagcaggagtgcctgtcctcacctaggtccgtgggggtggagccctagtcaggcacca------------------------cctctacccagcacttctcttctccccttttgtatcatttaaaggggccacgttcctcccttcccagcactcccttatcaGTATGCTAGC
i chlSab2.chr17            I 1561 C 0
s manLeu1.NW_012099655v1     234834 289 -    352859 tcctctggacatctggacacctgtgtgtctgcctgctgggacctcgggtttttataggccaaggatgggggcatggtgggtcagggtggtcttttcaaatgcaacatttgggcgagaaagcaggagtgcctgtcctcacctaggtccatgggggtggagccctagtcaggcaccacgccttcctctacccagcacttctcttctccccagcacttctcttctccccttttgtatcatttaaagggaccacgttcttcccttcccagcactctcttatcaGTATGCTAGC
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570741           446734 37259 +   1532071 I
e proCoq1.NW_012152574v1     374357 185 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2007606   0 -   2232465 C
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=185186.000000
s hg38.chr6_GL000254v2_alt   614258 43 +   4827813 ATATTGCTTTTGGGATTCACTTCTCTAGGTTTTATTGTGTGTA
s panTro5.chr6             29586309 43 + 175400573 AAATTGCTTTTGGGATTCACTTCTCTAGGTTTTATTGTGTGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29824541 43 + 173848474 AAATTGCTTTTGGGATTCACTTCTCTAGGTTTTATTGTGTGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5627360 43 +   6154872 ATATTGCTTTTGGGATTCACTTCTCTAGGTTTTATTATGTGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29855411 43 + 172585720 AGATTGCTTTTGGGATTCACTTCTCTAGGCTTTATTATGTGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29518384 43 - 170955103 AGATTGCTTTTGGGATTCACTTCTCTAGGCTTTATTATGTGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2504876 43 -   2996164 AGATTGCTTTTGGGATTCACTTCTCTAGGCTTTATTATGTGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     250961 43 +    766320 AGATTGCTTTTGGGATTCACTTCTCTAGGCTTTATTATGTGTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28759704 43 -  71996105 AGATTGCTTTTGGGATTCACTTCTCTAGGTTTTATTATGTGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     235123 43 -    352859 AGATTGCTTTTGGGATTCACTTCTCTAGGCTTTATTATGTGTG
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2007606 43 -   2232465 ATACTAGTTTGAAGATCTACTTCTCCAGACTTTATTATATCAA
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570741           446734 37259 +   1532071 I
e proCoq1.NW_012152574v1     374357 185 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=179542.000000
s hg38.chr6_GL000254v2_alt   614301 51 +   4827813 TTTTAC-TTTTTTTGTTTTTAATGTTTCTTTACTTATTTTCTTTAGTATACT
s panTro5.chr6             29586352 51 + 175400573 TTTTAC-TTTTTTTGTTTTTAATGTTTCTTTACTTATTTTCTTTAGTATACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29824584 50 + 173848474 TTTTAC--TTTTTTGTTTTTAATGTTTCTTTACTTATTTTCTTTAGTATACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5627403 51 +   6154872 TTTTAC-TTTTTTTGTTTTTAATGTTTCTTTACTTATTTTCTTTAGTATACT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29855454 48 + 172585720 TTTTGCTTTTTTTTGTTTTTAACATTTCT----TTATTTTCTTTAGTATATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29518427 48 - 170955103 TTTTGCTTTTTTTTGTTTTTAACATTTCT----TTATTTTCTTTAGTATATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2504919 48 -   2996164 TTTTACTTTTTTTTGTTTTTAACATTTCT----TTATTTTCTTTAGTATATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     251004 48 +    766320 TTTTGCTTTTTTTGGTTTTTAACATTTCT----TTATTTTCTTTAGTATATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28759747 52 -  71996105 TTTTACTTTTTTTTGTTTTTAACATTTCTTTACTTATTTTCTTTAGTATATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     235166 48 -    352859 TTTTGCTTTTTTTGGTTTTTAACATTTCT----TTATTTTCTTTAGTATATT
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2007649 45 -   2232465 TTTTAC----TTTTG---TCaatatttattcatttttttattttattgttct
i otoGar3.GL873742         C 0 I 271
s dasNov3.JH570741           483993 47 +   1532071 -TTTTCTTATTCCCCCTTCTAATACTTAT----TTAATTTCTTTTGTTCATT
i dasNov3.JH570741         I 37259 C 0
e proCoq1.NW_012152574v1     374357 185 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=111975.000000
s hg38.chr6_GL000254v2_alt   614352 26 +   4827813 GAAACTGAACAGCCTTAGATGTAACA
s panTro5.chr6             29586403 26 + 175400573 GAAACTGAACAGCCTTAGATTTAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29824634 26 + 173848474 GAAACTGAACAGCCTTAGATTTAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5627454 26 +   6154872 GAAACTGAACAGCCTTAGATTTAACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29855502 26 + 172585720 GAAACTGAATAGCCTTAGATTTAACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29518475 26 - 170955103 GAAACTGAACAGCCTTAGATTTAACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2504967 26 -   2996164 GAAACTGAACAGCCTTAGATTTAACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     251052 26 +    766320 GAAACTGAACAGCCTTAGATTTAACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28759799 26 -  71996105 GAAACTGAACAGCCTTAGATTTAACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     235214 26 -    352859 GAAACTGAACAGCCTTAGATTTAACA
i manLeu1.NW_012099655v1   C 0 C 0
s dasNov3.JH570741           484040 26 +   1532071 GAGGGTCTACAGCTACAGCATTAATA
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     374357 185 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2007694 271 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=353981.000000
s hg38.chr6_GL000254v2_alt   614378 75 +   4827813 AAATGCTATATTTGTTCAGAGCTGTGAGTTAATCATTGGAAGAGCA--TCAGAAAGTAAAGAAAACGAATGGGATAT
s panTro5.chr6             29586429 75 + 175400573 AAATGCTATATTTGTTCAGAGCTGTGAGTTAATCATTGGAAGAGCA--TCAGAAAGTAAAGAAAACGAATGGGATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29824660 75 + 173848474 AAATGCTATATTTGTTCAGAGCTGTGAGTTAATCATTGGAAGAGCA--TCAGAAAGTAAAGAAAACGAATGGGATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5627480 70 +   6154872 AAATGCCATATTTATTCAGAGCTGTGAGTTAATCATTGGAAGAGCA--TCAGAAAGT-----AAACGAATGGGATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29855528 75 + 172585720 AAATGCTATATTTATTCAGAGCTGTGAATTAATCATTGGAAGAGCA--TCAGAAAGTAAAGAAAATGAATGGGATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29518501 75 - 170955103 AAATGCTATATTTATTCAGAGCTGTGAATTAATCATTGGAAGAGCA--TCAGAAAGTAAAGAAAATGAATGGGATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2504993 75 -   2996164 AAATGCTATGTTTATTCAGAGCTGTGAATTAATCATTGGAAGAGCA--TCAGAAAGTAAAGAAAATGAATGGGATAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     251078 75 +    766320 AAATGCTATATTTATTCAGAGCTGTGAATTAATCATTGGAAGAGCA--TCAGAAAGTAAAGAAAATGAATGGGATAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28759825 75 -  71996105 AAATGCTGTATTTATTCAGAGCTGTGAATTAATCATTGGAAGAGCA--TTGGAAAGTAAAGAAAATGAATGGGATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     235240 75 -    352859 AAATGCTATATTTATTCAGAGCTGTGAATTAATCACTGGAAGAGCA--TCAGAAAGTAAAGAAAATGAATGGGATAT
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2007965 71 -   2232465 AAATGCTACATTTATT-AGAGCTTCTAACTATTCATTGGAAGAGCATTTCAGGAAGAAAAGAAAACTTATAT-----
i otoGar3.GL873742         I 271 C 0
s dasNov3.JH570741           484066 71 +   1532071 GCATGCTGTCTTTGTTCAGAGCCCTGG---AATCATTGAAAGAGCA--TCAGAAAGAAAAGAAAACT-GTGAGATAT
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     374357 185 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=200856.000000
s hg38.chr6_GL000254v2_alt   614453 36 +   4827813 AAACAGAATGTGAGAATTGCAGTGGCATTGATAAAA
s panTro5.chr6             29586504 36 + 175400573 AAACAGAATGTGAGAATTGCAGTGGCATTGATAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29824735 36 + 173848474 AAACAGAATGTGAGAATTGCAGTGGCATTGATAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5627550 36 +   6154872 AAACAGAATATGAGAATTGCAGTGGTATTGATAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29855603 36 + 172585720 AAACAGAATGTGAGAATTGCGGTGGTATTGATAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29518576 36 - 170955103 AAACAGAATGTGAGAATTGCAGTGGTATTGATCAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2505068 36 -   2996164 AAACAGAATGTGAGAATTGCAGTGGTATTGATCAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     251153 36 +    766320 AAACAGAATGTGAGAATTGCGGTGGTATTGATAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28759900 36 -  71996105 AAACAGAATGTGAGAATTGCAGTGGTATTGATAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     235315 36 -    352859 AAACAGAATGTGAGAATTGCGGTGGTATTGATAAAA
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     374542 36 +    730504 AAACAGAATGTGAGAGTTGTAGTGGTACTGATAAAA
i proCoq1.NW_012152574v1   I 185 I 126
s otoGar3.GL873742          2008036 32 -   2232465 AAACAGACTGTGAGAATTGTAATGGTACTGAT----
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           484137 31 +   1532071 AAATATGATGTGAGAATTTTAGTGCAATCAA-----
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=553318.000000
s hg38.chr6_GL000254v2_alt   614489 127 +   4827813 CAGATGGCAACTGATTTTGATTAAAGGGTT--ATGAGTTTGAATTAAAACAAAATATGGC---GTGAGATTTGGTTGAATTTAGAATAGAAGTAAAAGCTGCAGATAAATAAAGTGAAAGTCAGTGGTACAT
s panTro5.chr6             29586540 127 + 175400573 CAGATGGCAACTGATTTTTATTAAAGGGTT--ATGAGTTTGAATTAAAACAAAATATGGC---GTGAGATTTGGTTGAATTTAGAATAGAAGTAAAAGCTGCAGATAAATAAAGTGAAAGTCAGTGGTACAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29824771 127 + 173848474 CAGATGGCAACTGATTTTTGTTAAAGGGTT--ATGAGTTTGAATTAAAACAAAATATGGC---GTGAGATTTGGTTGAATTTAGAATAGAAGTAAAAGCTGCAGATAAATAAAGTGAAAGTCAGTGGTACAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5627586 126 +   6154872 CAGATGGCAACTGATTTTGATTAAAGGGTT--ATGAGTTTGAATTAAAACAAAAT-TGGC---ATGAGATTTGGTTGAATTTAGAATAGAAGTAAAAGCTGCAGATAAATAAAGTGAAAGTCAGTGGTACAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29855639 130 + 172585720 CAGATGGCAACTGATTTTGATTAAAGGGTT--ATGAGTTTGAATTAAAACAAAATATGGCATTATGAGATTTGGTTGAATTTAGAATGGAAGTAAAAGCTGCAGATATACAAAGTGAAAGTCAGTGGTATAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29518612 130 - 170955103 CAGATGGCAACTGGTTTTGATTAAAGGGTT--ATGAGTTTGAATTAAAACAAAATATGGCATTATGAGATTTGGTTGAATTTAGAATGGAAGTAAAAGCTGCAGATATACAAAGTGAAAGTCAGTGGTATAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2505104 130 -   2996164 CAGATGGCAACTGGTTTTGATTAAAGGGTT--ATGAGTTTGAATTAAAACAAAATATGGCATTATGAGATTTGGTTGAATTTAGAATGGAAGTAAAAGCTGCAGATATACAAAGTGAAAGTCAGTGGTATAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     251189 130 +    766320 CAGATGGCAACTGATTTTGATTAAAGGGTT--ATGAGTTTGAATTAAAACAAAATATGGCATTATGAGATTTGGTTGAATTTAGAATGGAAGTAAAAGCTGCAGATATACAAAGTGAAAGTCAGTGGTATAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28759936 130 -  71996105 CAGATGGCAACTGATTTTGATTAAAGGGTT--ATGAGTTTGAATTAAAACAAAATATGACATTATGAGATTTGGTTGAATTTAGAATGGAAGTAAAAGCTGCAGATATACAAAGTGAAAGTCAGTAGTATAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     235351 130 -    352859 CAGATGGCAACTGATTTTGATTAAAGGGTT--ATGAGTTTGAATTAAAACAAAATATGGCATTATGAGATTTGGTTGAATTTAAAATGGAAGTAAAAGCTGCAGATATACAAAGTGAAAGTCAGTGGTATAC
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2008068 116 -   2232465 ----------------TTCTTAAAAGGATTAAAAGAGTTCAGATTAAAATATCATATGGCATTCTGAGACTTGGTTAAATTTAAGATACAAGAAAAAGTTATACATGTATAAAGTGAAAATTTCTGACTTAG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           484168 114 +   1532071 -GGATGGAAACTGATTCTGACAAAC---TA--AAGACTTTAGATTAAAACAT--TTTGGT-TTATGAGTCTTAAATGAAAGTAGGGTAGAAGTAAAA-CTGTAGATTTGC--AGTGAGAATCATAA------
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     374578 126 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=1453197.000000
s hg38.chr6_GL000254v2_alt   614616 286 +   4827813 GGTTAATATTTAAAGC-AAAAA-------------------------AAAAGTGAAAGAGGTAGACTACATTGAGACAGAAGAGCATGTTGTCAAAGTATGAGGCTTGGATGTTTCCCACTTTGGAAATATTTGATGAGAAATAC-----------------------GTGTTGACCAAA-AAA-------------AATTTTTTATCATCTAATAAGCAAATGTGTC-AGAAA-----ATTTTGACTTAAA-ATAATATTTGCAACCAACTAAATTATATCATTCATTATCTCTACTTATTCATCTATTCTGTGAACATAATATTCTGGAATAATATTCTATGGTGAATGAAACA---
s panTro5.chr6             29586667 286 + 175400573 GGTTAATATTTAAAGC-AAAAA-------------------------AAAAGTGAAAGAGGTAGACTACATTGAGACAGAAGAGCATGTTGTCAAAGTATGAGGCTTGGATGTTTCCTACTTTGGCAATATTTGATGAGAAATAC-----------------------GTGTTGACCAAA-AAA-------------AATTTTTTATCATCTAATAAGCAAATGTGTC-AGAAA-----ATTTTGACTTAAA-ATAATATTTGCAACCAACTAAATTATGTCATTTATTATCTCTACTTATTCATCTATTCTGTGAACATAATATTCTGGAATAATATTCTATGGTGAATGAAATA---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29824898 286 + 173848474 GGTTAATATTTAAAGC-AAAAA-------------------------AAAAGTGAAAGAGGTAGACTACATTGAGACAGAAGAGCATGTTGTCAAAGTATGAGGCTTGGATGTTTCCTACTTTGGAAATATTTGATGAGAAATAC-----------------------ATGTTGACCAAA-AAA-------------AATTTTTTATCATCTAATAAGCAAATGTGTC-AGAAA-----ATTTTGACTTAAA-ATAATATTTGCAACCAACTAAATTATATCATTTATTATCTCTACTTATTCATCTATTCTGTGAACATAATATTCTGGAATAATATTCTATGGTGAATGAAATA---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5627712 287 +   6154872 GGTTAATATTTAAAGCAAAAAA-------------------------AAAAGTGAAAGGGGTAGACTACATTGAGACAGAAGAGCATGTTGTCAAAGTATGAGGCTTGGATGTTTCCCACTTTGGAAATATTTGATGAGAAATAC-----------------------ATGTTGACCAAA-AAA-------------ATTTTTTTATCATCTAACAAGCAAATGTGTC-AGAAA-----ATTTTGACTTAAA-ATAATATTTGCAACCAACTAAATTATATCATTTATTATCTCTGCTTATTCATCTATTCTGTGAACATAATATTCTGGAATAATATTCTATGGTGAATGAAATA---
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29855769 285 + 172585720 GGTTAATATTTAAAGC-AAAAA-------------------------AAAAGTGGAAGAGGTAGACTACATTGAGACAGAAGAGCAAGTTGTCAAAGTATGAGGCTTGAATGTTTCCCACTTTGGAAATATTTGATGAGAAATAC-----------------------GTGTTGACCAAA-AA--------------TTTTTTTTATCATCTAATAAGCAAATGTGTC-AGAAA-----ATTTTGACTTAAA-ATAATATTTACAACCAACTAAATTACATCATTTATTATCTCTGCTTATTCATCTATTCTGTGAACACAGTATCCTGGAATAATATTCTATGGCAAATGAAATA---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29518742 285 - 170955103 GGTTAATATTTAAAGC-AAAAA-------------------------AAAAGTGGAAGAGGTAGACTACATTGAGACAGAAGAGCAAGTTGTCAAAGTATGAGGCTTGGATGTTTCCCACTTTGGAAATATTTGATGAGAAATAC-----------------------GTGTTGACCAAA-AA--------------TTTTTTTTATCATCTAATAAGCAAATGTGTC-AGAAA-----ATTTTGACTTAAA-ATAATATTTACAACCAACTAAATTACATCATTTATTATCTCTGCTTATTCATCTATTCTGTGAACACAGTATCCTGGAATAATATTCTATGGCAAATGAAATA---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2505234 285 -   2996164 GGTTAATATTTAAAGC-AAAAA-------------------------AAAAGTGGAAGAGGTAGACTACATTGAGACAGAAGAGCAAGTTGTCAAAGTATGAGGCTTGGATGTTTCCCACTTTGGAAATATTTGATGAGAAATAC-----------------------ATGTTGACCAAA-AT--------------TTTTTTTTATCATCTAATAAGCAAATGTGTC-AGAAA-----ATTTTGACTTAAA-ATAATATTTACAGCCAACTAAATTATATTATTTATTGTCTCTGCTTATTCATCTATTCTGTGAACACAATATTCTGGAATAATATTCTATGGCAAATGAAATA---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     251319 284 +    766320 AGTTAATATTTAAAGC-AAAAA-------------------------AAAAGTGGAAGAGGTAGACTACATTGAGACAGAAGAGCAAGTTGTCAAAGTATGAGGCTTGGATGTTTCCCACTTTGGAAATATTTGATGAGAAATAC-----------------------GTGTTGACCAAA-AA---------------TTTTTTTATCATCTAATAAGCAAATGTGTC-AGAAA-----ATTTTGACTTAAA-ATAATATTTACAACCAACTAAATTACATCATTTATTATCTCTGCTTATTCATCTATTCTGTGAACACAATATCCTGGAATAATATTCTATGGCAAATGAAATA---
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28760066 285 -  71996105 AGTTAATATTTAAAGC-AAAAA-------------------------AAAAGTGGAAGAGGTAGACTACATTGAGACAGAAGAGCAAGTTGTCAAAGTATGAGGCTTGGATGTTTCCCACTTTGGAAATATTTGATGAGAAATAC-----------------------ATATTGACCAAA-AA--------------TTTTTTTTATCATCTAATAAGCAAATGTGTC-AGAAA-----ATTTTGACTTAAA-ATAATATTTACAACCAACTAAATTATATCATTTATTATCTCTGCTTATTCATCTATTCTGTGAACACAATATTATGGAATAATATTCTATGGCAAATGAAATA---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     235481 284 -    352859 AGTTAATATTTAAAGC-AAAAA-------------------------AAAAGTGGAAGAGGTAGACTACATTGAGACAGAAGAGCAAGTTGTCAAAGTATGAGGCTTGGATGTTTCCCGCTTTGGAAATATTTGATGAGAAATAC-----------------------GTGTTGACCAAA-AA---------------TTTTTTTATCATCTAATAAGCAAATGTGTC-AGAAA-----ATTTTGACTTAAA-ATAATATTTACAACCAACTAAATTACATCATTTATTATCTCTGCTTATTCATCTATTCTGTGAACACAATATCCTGGAATAATATTCTATGGCAAATGAAATA---
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     374704 282 +    730504 GGTTAATATTTAAAGC----AA-------------------------AAAAGTGAAAGAGGTAGACCACA-TGAGATAGAGGAGCATATTGTCAAAGAATGAGCC-TGTATGTTT--CACTTTTTGAATAATTGAGGAGAAATAC-----------------------ATGTTGACCAAA-AT--------------AATTTCTGATCAACTAATGAGCAAATATGACTAGAAAAGTTTACTTTAACTTAAA-ATAAACTTTGCAACTGACTAAATTAAACCCACCAT--TCTCTGCTTATTCATCTATTCCACGAACATAATATTCTGGAATAATATCCTGCAGTGAATAAAACA---
i proCoq1.NW_012152574v1   I 126 I 33
s otoGar3.GL873742          2008184 306 -   2232465 GGTTAATATTAAAAGC-----A-------------------------AAAAGTGAAAGAGGTAGACCACA-TGAAACAGA-GAGCATATTGTCAAAGAATGAGCCTTGGATGTTT-CCACTTTTGTAGTAGCTGATGAGAAGTACTGATAAGAAATGTTGATAAGAGTATGTTGACCAAAGAA--------------AATTTCTGACCAACTAAAAGAGAAATGGGACTAGAAAAGTTTACTTTAACTTGAA-ATAAATGTTACAATTGACTAAATTTTGCCCTTCAT--TCTCTGCTTATTCATTTATTCCATGGACATAGTATCCTTGAATAATATCCCACAGTGAATAAAACA---
i otoGar3.GL873742         C 0 I 4
s dasNov3.JH570741           484282 327 +   1532071 GGTTAATATTTTAAGC-ATAAAAGCATAAGGTTAATATTTGAAGTATAAAGGGCAAAGAGATAGACCACATTGAGATAGAAAAGAATATGGTCTCAGAATAAA-TTTGGGTTTTTCTCACTTTGG-AATATTTTACTAAAAATAA-----------------------TTGACAACGAAC-AAACAAACAAAAATATATCATCTGATCCAGTAAAGAGCAAATTTGACTAGAGAAGTTTATTTCAACTTAAATGTCATCTTTACATACA--TAGAATCCACACCTCCCCCTCTCTAC---TTCATTTTTTCAACAAAATAAATATTTTACAATACTCCCTTACAGGGACTAAAACATCA
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=134334.000000
s hg38.chr6_GL000254v2_alt   614902 29 +   4827813 AACTATGGGATGTGAGAAATACTAAAACG
s panTro5.chr6             29586953 29 + 175400573 AACTATGGGATGTGAGAAATACTAAAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29825184 29 + 173848474 AACTATGGGATGTGAGAAATACTAAAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5627999 29 +   6154872 AACTATGGGATGTGAGAAATACTAAAATG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29856054 29 + 172585720 AACTATGGGATGTGAGAAATACCAAAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29519027 29 - 170955103 AACTATGGGATGTGAGAAATACCAAAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2505519 29 -   2996164 AACTGTGGGATGTGAGAAATACCAAAATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     251603 29 +    766320 AACTATGGGATGTGAGAAATACCAAAATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28760351 29 -  71996105 AACTATGGGATGTGAGAAATACCAAAATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     235765 29 -    352859 AACTATGGGATGTGAGAAATACCAAAATG
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2008494 29 -   2232465 ACTTTTGAGTTATAGGGAATGCCTAGATG
i otoGar3.GL873742         I 4 C 0
s dasNov3.JH570741           484609 29 +   1532071 ACCTTGGGGATATAGGGAACATAATGATG
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     374986 33 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=373528.000000
s hg38.chr6_GL000254v2_alt   614931 65 +   4827813 TATACTTCCTGTAAGATGTGTGTTAACTGGGAGCATAAAAAGTAGTAAGAAAGCAAAAACTTTCA
s panTro5.chr6             29586982 65 + 175400573 TATACTTCCTGTAAGATGTGTGTTAACTGGGAGCATAAAAAGTAGTAAGAAAGCAAAAACTTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29825213 65 + 173848474 TATACTTCCTGTAAGATGTGTGTTAACTGGGAGCATAAAAAGTAGTAAGAAAGCAAAAACTTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5628028 65 +   6154872 TATACTTCCTGTAAGATGTGTGTTAACTGGGAGCATAAAAAGTAGTAAGAAAGCAAAAACTTTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29856083 65 + 172585720 TGTACTTCCTACAAGATGTGTGTTAACTGGGAGCATAAAAAGTAGCAAGAAAGCAAAAACTTTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29519056 65 - 170955103 TGTACTTCCTACAAGATGTGTGTTAACTGGGAGCATAAAAAGTAGCAAGAAAGCAAAAACTTTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2505548 65 -   2996164 TATACTTCCTACAAGATGTGTGTTAACTGGGAGCATAAAAAGTAGTAAGAAAGCAAAAACTTTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     251632 65 +    766320 TGTACTTCCTACAAGATGTGTGTTAACTGGGAGCATAAAAAGTAGCAAGAAAGCAAAAACTTTCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28760380 65 -  71996105 TGTACTACCTACAAGATGTGTGTTAACTGGGAGCATAAAAAGTAGTAAGAAAGCAAAAACTTTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     235794 65 -    352859 TGTACTTCCTACAAGATGTGTGTTAACTGGGAGCATAAAAAGTAGCAAGAAAGCAAAAACTTTCA
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     375019 65 +    730504 TATACTTCTTATAAGATGTGTGTTCACTAGCAGCATACAAAGTAATAAGAAAGCAAAGACTTTCA
i proCoq1.NW_012152574v1   I 33 I 2668
s otoGar3.GL873742          2008523 60 -   2232465 TATACTTCTT-----ATGTGTGTTCACTGAAAGCATACAAACTAAGAAGAAAGCAAAGACTTTCA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           484638 59 +   1532071 TATTCTTCTTACGAGA----TGTTCACTAGAGTCATAAAAAGTAAT--GAGAGTAAAGACCGTCA
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=174741.000000
s hg38.chr6_GL000254v2_alt   614996 37 +   4827813 TGCACAAACCCTCTAGGATGTTCAATGTCATGGTAGT
s panTro5.chr6             29587047 37 + 175400573 TGCACAAACCCTCTAGGATGTTCAATGTCATGGTAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29825278 37 + 173848474 TGCACAAACCCTCTAGGATGTTCAATGTCATGGTAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5628093 37 +   6154872 TGCACAAACCCTCTAGGATGTTCAATGTCATGGTAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29856148 37 + 172585720 TGCACAAACCCTCTAGGATGTTCAGTGTCATGGTAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29519121 37 - 170955103 TGCACAAACCCTCTAGGATGTTCAGTGTCATGGTAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2505613 37 -   2996164 TGCACAAACCCTCTAGGATGTTCAATGTCATGGTAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     251697 37 +    766320 TGCACAAACCCTCTAGGATGTTCAGTGTCATGGTAGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28760445 37 -  71996105 TGCACAAACCCTCTAGGATGTTCAATGTCATGGTGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     235859 37 -    352859 TGCACAAACCCTCTAGGATGTTCAGTGTCATGGTAGT
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2008583 37 -   2232465 CATCCAAATAATATGTGATGTTCAATGTCACGATAGT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           484697 25 +   1532071 ------------TGAAGATGCTAAATACCATTATAGT
i dasNov3.JH570741         C 0 I 4
e proCoq1.NW_012152574v1     375084 2668 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=61133.000000
s hg38.chr6_GL000254v2_alt   615033 15 +   4827813 TTTATGGTATGTTTA
s panTro5.chr6             29587084 15 + 175400573 TTTATGGTATGTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29825315 15 + 173848474 TTTATGGTATGTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5628130 15 +   6154872 TTTATGGTATGTTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29856185 15 + 172585720 TTTATGGTATGTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29519158 15 - 170955103 TTTATGGTATGTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2505650 15 -   2996164 TTTATGGTATGTTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     251734 15 +    766320 TTTATGGTACGTTTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28760482 15 -  71996105 TTTATGGTATGTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     235896 15 -    352859 TTTATGGTATGTTTA
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2008620 12 -   2232465 T---TGGAACCttca
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570741           484722  4 +   1532071 I
e proCoq1.NW_012152574v1     375084 2668 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=4349329.000000
s hg38.chr6_GL000254v2_alt   615048 1109 +   4827813 T--ATATATTTTAAAttttattttattttaggttccaggatacatgtgcagacgtgcaggtttgttacataggtaaacgtgtgccatggtgatttgctgcacctaaccacccatcacctaggtattaagccctgcatgcattagccatttgtcctgatgctctcccaccctccaccc--gccgacaggccctggtgtgtgttgttccctccctgtgtccatgtgttctctttattctactcccacttattagtgagaacatgcggtgtttggttttctgtttcagttactttgttgaggatgatggcttccagcttcatctatgtccctgcaaaggacatgatcccattcctttttatggctgcatagtattccatgatatatatgtactacattttatgtattctatcattgatgggcatttggattgattccaagtctttgctattgtgaatagtgctgcaataaacatatgtgtgtg--tatctttataatagaatgatttatattcctttggttatatacccagtaatgggattgctgggctaaatggtatttctggttctagatccttgaggaattgccacactgtcttccacaatggttgaactaatttacattccctccaacagtgtaaaagtgttcctatttctccacagccttgccagcatctattgtttcttgactttttgataattgctcttctgactggcataagatggtagctcattgtggttttaatttgtatttctctaacaatcagtgatgttgagcttttcttcataa-tttgttggctgtgtaagtatcttctgagaagtgtctgttcatatcctttgcccactttttgatggggttatttgttttattattgtaaatttgtttaagtgccttgtaaattctggatattagacctttatcagatgggtagattgcaaaatttttttcccattcttcaggttgcctgttcactctgatggtagtttcttttggtgtgcagaagctctttagttaattagatcctgcttgtcaatttttgcttttgttgcaattgcttttgacaatttcatcataaaatttttgcccatgcctattctctgaatggtattacctacattt
s panTro5.chr6             29587099 1109 + 175400573 T--ATATATTTTAAAttttattttattttaggttccgggatacatgtgcagacgtgcaggtttgttacacaggtaaacgtgtgccatggtgatttgctgcacctaaccactcatcacctaggtattaagccctgcatgcattagccatttgtcctgatgctctcccaccctccaccc--gccgacaggccctggtgtgtgttgttccctccctgtgtccatgtgttctctttattctactcccacttattagtgagaacatgcggtgtttggttttctgtttcggttactttgttgaggatgatggcttccagcttcatccatgtccctgcaaaggacatgatcccattcctttttatggctgcatagtattccatgatatatatgtactacattttatgtattctatcattgatgggcatttggattgattccaagtctttgctattgtgaatagtgctgcaataaacatatgtgtgtg--tatctttataatagaatgatttatattcctttggttatatacccagtaatgggattgctgggctaaatggtatttctggttctagatccttgaggaattgccacactgtcttccacaatggttgaactaatttacattccctccaacagtgtaaaagtgttcctatttctccacagccttgccagcatctattgtttcttgactttttgataattgcccttctgactggcataagatggtagctcattgtggttttaatttgtatttctctaacaatcagtgatgttgagcttttcttcataa-tttgttggctgtgtaagtatcttctgagaagtgtctgttcatatcctttgcccactttttgatggggttatttgttttattattgtaaatttgtttaagtgccttgtaaattctggatattagacctttatcagatgggtagattgcaaaatttttttcccattcttcaggttgcctgttcactctgatggtagtttcttttggtgtgcagaagctctttagttaattagatcctgcttgtcaatttttgcttttgttgcaattgcttttgacaatttcatcataaaatttttgcccatgcctattccctgaatggtattacctacattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29825330 1108 + 173848474 T--ATATATTTTAAAttttattttattttaggttccgggatacatgtgcagacgtgcaggtttgttacacaggtaaacgtgtgccatggtgatttgctgcacctaaccactcatcacctaggtattaagccctgcatgcattagccatttgtcctgatgctctcccaccctccaccc--gccgacaggccctggtgtgtgttgttccctccctgtgtccatgtgttctctttattctactcccacttattagtgagaacatgcggtgtttggttttctgtttcggttactttgttgaggatgatggcttccagcttcatccatgtccctgcaaaggacatgatcccattcctttttatggctgcatagtattccatgatatatatgtactacattttatgtattctatcattgatgggcatttggattgattccaagtctttgctattgtgaatagtgctgcaataaacatatgtgtgtg--tatctttataatagaatgatttatattcctttggttatatacccagtaatgggattgctgggctaaatggtatttctggttctagatccttgaggaattgccacactgtcttccacaatggttgaactaatttacattccctccaacagtgtaaaagtgttcctatttctccacagccttgccagcatctattgtttcttgactttttgataattgcccttctgactggcataagatggtagctcattgtggttttaatttgtatttctctaacaatcagtgatgttgagcttttcttcataa-tttgttggctgtttaagtatcttctgagaagtgtctgttcatatcctttgcccactttttgatggggtta-ttgttttattattgtaaatttgtttaagtgccttgtaaattctggatattagacctttatcagatgggtagattgcaaaatttttttcccattcttcaggttgcctgttcactctgatggtagtttcttttggtgtgcagaagctctttagttaattagatcctgcttgtcaatttttgcttttgttgcaattgcttttgacaatttcatcataaaatttttgcccatgcctagtccctgaatggtattacctacattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5628145 1108 +   6154872 T--ATATATTTTAAAttttattttattttaggttccgggatacatgtgcagacgtgcagggttgttacataggtaaatgtgtgccatggtgatttgctgcacctaaccacccatcacctaggtattaagccctgcatgcattagccatttgtcctgatgctctcccaccctccaccc--accgacaggccctggtgtgtgttgttccctccctgtgtccatgtgttctctttattctactcccacttattagtgagaacatgcagtgtttggttttctgttttggttactttgttgaggatgatggcttccagcttcatccatgtccctgcaaaggacatgatcccattcctttttatggctgcatagtattccatgatatatatgtactacattttatgtattctatcattgatgggcatttggattgatttcaagtctttgctattgtgaatagtgctgcaataaacatatgtgtgtg--tatctttataatagaatgatttatattcctttggttatatacccagtaatgggattgctgggctaaatggtatttctggttctacatccttgaggaattgccacactgtcttccacaatggttgaactaattcacgttccctccaacagtgtaaaagtgttcctatttctccacagccttgccagcatctattgtttcttgactttttgataattgcccttctgactggcataagatggtagctcattgtggttttaatttgtatttctctaacaatcagtgatgttgagcttttcttcataa-tttgttggctgtgtaagtatcttctgagaagtgtctgttcatatcctttgcccactttttgatggggttatttgttttattattgtaaatttgtttaagtgccttgtaaattctggatattagacctttatcagatgggtagattgcaaaatttttttcccattcttcaggttgcctgttcactctgatggtagtttcttttggtgtgcagaagctctttagttaattagatcccgcttgtcaa-tttagcttttgttgcaattgcttttgacaatttcatcataaaatttttgcccatgcctattccctgaatggtattacctagattt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29856200 1115 + 172585720 TACATATATTTTAAAttttattttattttaggttccgggatacatgtgcagacgtacaggtttgttacataggtaaacgtgtgccatggtgatttgctgcatctaaccactcatcacctaggtattaagccctgcatgcattagccatttgtcctgatgctctcccaccctccacccc-cgtgacaggccctggtgtgtgttgttccctccctgtgtccatgtgttctcactgttctactcccacttattagtgagaacatgcggtgtttggttttctgtttctgttagtgtgttgaggacgatggcttccagcttcgtccatgtccctgcaaagaacgtgatcccattcctttttatggctgcatagtattccatggtatatatgtactacattttatctgttctatcattggtgggcatttggattgattccaagtctttgctcttgggaatagtgctgcaataaacatatgtgtgtgtgtatctttataatagaataatttatattcctttgggtatatacccagtaatgagattgctgggttaaatggtatttctggttctagatccttgaggaattgccacactgtcttccacaatggttgaactaatttacattccctccaacagtgtaaaagtgttcctgtctctccacagcctcaccagcatctattgtttcttgactttttggtaattgcccttctgactggtgtgagatggtagttcattgcggttttaatttgtgtttctctaacgatcagtgatgttgagcttttcttcataagtttgttggctgtgtgaatatcttctgagaagtatctgttcatatcctttgtccactttttggtggggttatttattttattattgtaaatttgtttaagttccttgtaaattctggatattagacctttatcagatgggtagattgcaaaaattgtctccaattcttcaggttgcctgttcactctgatgataatttcttttggtgtgcagaagctgtttagttaattagatcccatttgtcaattttaccttttgctgcaattacttttgacaatttcatcataaaatttttgcccttgcctatttcctgaatggtattgcctagattt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29519173 1115 - 170955103 TACATGTATTTTAAAttttattttattttaggttccaggatacatgtgcagacgtacaggtttgttacataggtaaacttgtgccatggtgatttgctgcatctaaccactcatcacctaggtattaagccctgcatgcattagccatttgtcctgatgctctcccaccctccacccc-cctgacaggccctggtgtgtgttgttccctccctgtgtccatgtgttctcactgttctactcccacttattagtgagaacatgcggtgtttggttttctgtttctgttagtgtgttgaggacgatggcttccagcttcgtccatgtccctgcaaaggacgtgatcccattcctttttatggctgcatagtattccatggtatatatgtactacattttatctgttctatcattggtgggcatttggattgattccaagtctttgctcttgggaatagtgctgcaataaacatatgtgtgtgtgtatctttataatagaataatttatattcctttgggtatatacccagtaatgagattgctgggttaaatggtatttctggttctagatccttgaggaattgccacactgtcttccacaatggttgaactaatttacattccctccaacagtgtaaaagtgttcccgtctctccacagcctcaccagcatctattgtttcttgactttttggtaattgcccttctgactggtgtgagatggtagttcattgcggttttaatttgtgtttctctaacgatcagtgatgttgagcttttcttcataagtttgttggcagtgtaaatatcttctgagaagtatctgttcatatcctttgtccactttttggtggggttatttgttttattattgtaaatttgtttaagttccttgtaaattctggatattagacctttatcagatgggtagattgcaaaaattgtctccaattcttcaggttgcctgttcactctgatgataatttcttttggtgtgcagaagctgtttagttaattagatcccatttgtcaattttagcttttgctgcaattacttttgacaatttcatcataaaatttttgcccttgcctatttcctgaatggtattgcctagattt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2505665 1114 -   2996164 TACATGTATTTTAAAttttattttattttaggttccaggatacatgtgcagacgtacaggtttgttacataggtaaacttgtgccatggtgatttgctgcacctaaccactcgtcacctaggtattaagccctgcatgcattagccatttgtcctgaagctctcccaccctccacccc-cctggcaggccttggtgtgtgttgttccttccctgtgtccatgtgttctcactgttctactcccacttattagtgagaacatgcggtgtttggttttctgtttctgttagtttgttgaggacgatggcttccagctttgtctatgtccctgcaaaggacatgatcccattcctttttacagctgcatagtattccgtggtatatatgtactacattttatctgttctatcattggtgggcatttggattgattccaagtctttgctcttgtgaatagtgctgcaataaacatatgtgtgtgtatatctttataatagaatgatttatattcctttgggtatatacccagtaatgagattgctgggttaaatggtatttctggttctagatccttgaggaattgccacactgtcttccacagtggttgaactaatttacattccctccaacagtgtaaaagtgttcctatttctccacagcctcaccagcatctattgtatcttg-ctttttgataattgcccttctgactggtgtgagatggtagttcattgcggttttaatttgtgtttctctaacgatcagtgatgttgagcttttcttcataagtttgttggctgtgtaaatatcttctgagaagtgtctgtttatatcctttgtccactttttggtggggttatttgttttattattgtaaatttgtttaagttccttgtaaattctggatattagacctttatcagatgggtagattgcaaaaattttctccaattcttcaggttgcctgttcactctgatgatagtttcttttggtgtgcagaagctgtttagttaattagatcccatttgtcaattttagcttttgctgcaattacttttgacaatttcatcataaaatttttgcccttgcctatttcctgaatggtattgcctagattt
i macNem1.NW_012011356v1   C 0 I 315
s cerAty1.NW_012002711v1     251749 1114 +    766320 TACATATATTTTAAAttttattttattttaggttccaggatacatgtgcagacgtacaggtttgttacataggtaaacgtgtgccatggtgatttgctgcatctaaccactcatcacctaggtattaagccctgcatgcattagccatttgtcctgatgctctcccacactcc-cccc-gccgataggccctggtgtgtgttgttccctccctgtgtccatgtgttctcactgttctactcccacttattattgagaacatgcggtgtttggttttctgtttctgttagtgtgttgaggatgatggcttccagctttgtccatgtccctgcaaaggacgtgatcccattcctttttatggctgcatagtattccatggtatatatgtactacattttatctgttctatcattggtgggcatttggattgattccaagtctttgctcttgggaatagtgctgcaataaacatatgtgtgtgtatatctttataatagaataatttatattcctttgggtatatacccagtaatgagattgctgggttaaatggtatttctggttctagatccttgaggaattgccacactgtcttccacaatggttgaactaatttacattccctccaacagtgtaaaagtgttcctatttctccacagcctcaccagcatctattgtttcttgactttttgataattgcccttctgactggtgtgagatggtagttcattgtggttttaatttgtgtttctctaacaatcagtgatgttgagcttttcttcataagtttgttggctgtgtaaatatcttctgagaagtgtctgttcatatcctttgtccactttttggtggggttatttattttattattgtaaatttgtttaagttctttgtaaattctggatattagacctttatcagatgggtagattgcaaaaattttctccaattcttcaggttgcctgttcactctgatgatagtttcttttggtgtgcagaagctgtttagttaattagatcccatttgtcaattttagcttttgctgcaattacttttgacaatttcatcataaaatttttgcccttgcctatttcctgaatggtattgcctagattt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28760497 1113 -  71996105 TACATATATTTTAAAttttattttattttaggttctgggatacatgtgcagatgtacaggtttgttacataggtaaacgtgtgccatggtgatttgctgcacctaaccactcatcacctaggtattaagccctgcatgcattagccatttgtcctgatgctctcccaccctccacctc-cctgacaggccctggtgtgtgttgttccctccctgtgtccatgtgttctcactgttctgctcccacttattagtgagaacatgcggtatttggttttctgtttctgttagtttgttgaggatgatggcttccagcttcgtccatttccctgcaaaggacatgatcccattcctttttacagctgcatagtattccgtggtatatatgcactacattttatctgttctatcattggtgggcatttggattgattccaagtctttgctcttgtgaatagtgctgcaataaacatatgtgtgtgtatatctttataatagaatgatttatattcctttgggtatatacccagtaatgagattgct-ggttaaatggtatttctggttctagatccttgaggaattgccacactgtcttccacagtggttgaactaatttacattccctccaacagtgtaaaagtgttcctatttctccacagcctcgccagcatctattgtatcttg-ctttttgataattgcccttctgactggtgtgagatggtagttcattgcggttttaatttgtgtttctctaatgatcagtggtgttgagcttttcttcataagtttgttggctgtgtaaatatcttctgagaagtgtctgtttatatcctttgtccactttttgttggggttatttgttttattattgtaaatttgtttaagttccttgtaaattctggatattagacctttatcaggtaagtagattgcaaaaattttctccaattcttcaggttgcctgttcactctgatgatagtttcttttggtgtgcagaagctgtttagttaattagatcccatttgtcaattttagcttttgctgcaattacttttgacaatttcatcataaaatttttgcccttgcctatttcctgaatggtattgcctagattt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     235911 1116 -    352859 TACATATATTTTAAAttttattttattttaggttccaggatacatgtgcagacgtacaggtttgttacataggtaaacgtgtgccatggtgatttgctgcatctaaccactcatcacctaggtattaagccctgcatgcattagccatttgtcctgatgctctcccaccctcccccccgcccgataggccctggtgtgtgttgttgcctccctgtgtccatgtgttctcactgttctactcccacttattattgagaacatgcggtgtttggttttctgtttctgttagtgtgttgaggatgatggcttccagctttgtccatgtccctgcaaaggacgtgatcccattcctttttatggctgcatagtattccatggtatatatgtactacattttatctgttctatcattggtgggcatttggattgattccaagtctttgctcttgggaatagtgctgcaataaacatatgtgtgtgtatatctttataatagaataatttatattcctttgggtatatacccagtaatgagattgctgggttaaatggtatttctggttctagatccttgaggaattgccacactgtcttccacaatggttgaactaatttacattccctccaacagtgtaaaagtgttcctatttctccacggcctcaccagcatctattgtttcttgactttttgataattgcccttctgactggtgtgagatggtagttcattgtggttttaatttgtgtttctctaacgatcagtgatgttgagcttttcttcataagtttgttggctgtgtaaatatcttctgagaagtgtctgttcatatcctttgtccactttttggtggggttatttattttattattgtaaatttgtttaagttccttgtaaattctggatattagacctttatcagatgggtagattgcaaaaattttctccaattcttcaggttgcctgttcactctgatgatagtttcttttggtgtgcagaagctgtttagttaattagattccatttgtcaattttagcttttgctgcaattacttttgacaatttcatcataaaatttttgcccttgcctatttcctgaatggtattgcctagattt
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570741           484722    4 +   1532071 I
e proCoq1.NW_012152574v1     375084 2668 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2008632    0 -   2232465 C
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=11772112.000000
s hg38.chr6_GL000254v2_alt   616157 3009 +   4827813 tcttctaggatttttatcgttttaggttttacatttaagtctttaatacatcttgagctaatttttgtataaggtgtaaggaaggggtctagtttcagtttgctgcatatggctagcccattttcccagcaccatttattaaatagggaatcatttccccattgcttgtttttgtcaggtttgttgcaattcagatggttgtagatgtgccgtcttatttctgatctgttggtctatgtgtctgctttggtaccagtaccatgctgttttggttactgtagccttgtattatagtttgaagtcaggtggcattatgcctccagctgtgttctttttgcttaggattgtcttggctatacaggctccttcttggttccatatgagttttaaagtagcctttttttttt------aattctctgaagaatgtcaatggtagtttgatgggaatagcactgaatctataaattactttggacagtatggctattttcacaatattggttcctcgtatccacaaggatgaaatgtttttccatttgtttgtgtcctctcctaattccttgagaagtggtttgtagttctcctt---gaagtctttcacatcccttgttagctgtattcctaggtattttattctctttgtagcaattatgaatgaaggttcattcatgatttggttctctgtttgtctattgttggtgtatagaaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgtttatcagcttaaggagattttgggctgagacgatggggttttctaaatatacaatgtcatctgcaaacagagacaatttgatttccagtctttttattcaaatacgctttatttctttctcttgcctgattgccctggccagaacatccaatactatgttgaataggaatggtgaaagaggatttccctgtcttgtgatagttttcaaagggaatgcttccagcttttgcctattcagtatgatattggctgtgggtttgtcataaatagctcttattattttgagatatgttccatcaatacctagtttattgaaagtttttagtatgaagggatgttgaaatttatcggaggccttttctgcatctatttagataatcatgtggtttttgtcattggttctgtttatgtgatgaattgcatttattgatttgtgtctgttgaaccagccttcatcccagggatgaagccgacttgattgtggcagataagctttttgatgtgctgctggatttgatttgccagtattttattgaggattttcacattgatgttcatcagagatattggccagaagttttcttattttgttccgtctctgccaggttttagtatcaggatgatgctgggcttataaaattagttagggagaagtccctccttttgaattgtttgaaatagttccagaaggagtggtaccaactcctttttgtacctctggtggaattcgactgtgagtccatctggtgctgggctttttttggttgttaggctatttattactgcttcaatttcagaatttgttattggtctattcaaggatttgaattcttcctggtgtagtcttgggagggtgtatgcatccaggaatttattcatttcttctagattttctagtttgtttgcat-gagatatttatagtattctctgatggtagtttgtatttttatggggtcagtggtgatatgccctttatcatttatattgtgtctatttgattcttctc-ttttttcttctttattagtctagctagcagtctat----tttattaatgtcttcaaaaaagaaacaacttctggatttattgatttgctgaagcattttcttgtgtctgtctcttcttcagttcttctccgatcttagttatttcttgttttctgctaaattttggatttatttgcccttgctcctctagttctttt-gttgtgatgttagggtgtcagtttgagttctttctagtgctacaaatttccctctaaacattgctttagctgcatcccagagattctggtatgttgtctctttgttcttattggtttcaagaatggtttagtttctgccttaatttcattatttacctagaagtcagtcaggagcaggttgttcaatttccatgtcattgttggttttgagtgaggttcttaatcctgagttctaatttgattgaactgtggtctgagagactgtttgttatga-tttcagttcttttgcatttgttgaggagtgcttcacttcccattatgtgatcgattttagagtaaatgccacgtggcactgagaagaatgtatattctgttgtttcaggctggaagggcttgcagatatctatcaggttcacttgatccagagccaagttcaagtcctgaatatccttgttagttttctgtcttgatgatctgtctaatgttgagaatggggtgttaaagtctcttagtattattgtgtggaagtctacgtctctttgtagctctctaagagcttgcttcatgaatctgggtgctcctgtattgggtgcatatacatttaggatagttagctctccttgttgaagtgacccctttaccattatgttatcccctcctttgtg-----tttttt----atcttttttggtttaaagtctgttttatcagaaactaggattacaatccttgcttttctctactttccatttgcttggtaaattttttccatccctttattttgagcctatgtgtgtcctggcacatgtcaaggatctcctgaatacagcacactgaggggtcttgactctttatccaatttgccagtctgtgtcttttaatt-gggtcatttagcccatttacatttaaggttaatattgttatatgtgaatttgatcctgtcatcatgatgctagctggttattttgcacacgagttgatgcagtttctttatagtgtcattgatccttgtatttcagtgtgtttttgcagtggctgatactggtttttcctttctgccccc----
s panTro5.chr6             29588208 3010 + 175400573 tcttctaggatttttatcgttttaggttttacatttaagtctttaatacatcttgagttaatttttgtataaggtgtaaggaaggggtctagtttcagtttgctgcatatggctagcccattttcccagcaccatttattaaatagggaatcatttccccattgcttgtttttgtcaggcttgttgcaattcagatggttgtagatgtgccgtcttatttctgatctgttggtctatgtgtctgctttggtaccagtaccatgctgttttggttactgtagccttgtattatagtttgaagtcaggtggcattatgcctccagctgtgttctttttgcttaggattgtcttggctatacaggctccttcttggttccatatgagttttaaagtagcctttttttttt-----taattctctgaagaatgtcaatggtagtttgatgggaatagcattgaatctataaattactttggacagcatggctattttcacaatattggttcctcgtatccgcaaggatgaaatgtttttccatttgtttgtgtcctcttctaattccttgagaagtggcttgtagttctcctt---gaagtctttcacatcccttgttagctgtattcctaggtattttattctctttgtagcaattatgaatgaaggttcattcatgatttggttctctgtttgtctattgttggtgtatagaaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgtttatcagcttaaggagattttgggctgagacgatggggttttctaaatatacaatgtcatctgcaaacagagacaatttgatttccagtctttttattcaaatacgctttatttctttctcttgcctgattgccctggccagaacatccaatactatgttgaataggaatgctgaaagaggatttcgctgtcttgtgatagttttcaaagggaatgcttccagcttttgcctattcagtatgatattggccgtgggtttgtcataaatagctcttattattttgagatatgttccatcaatacctagtttattgaaagtttttagtatgaagggatgttgaaatttatcggaggccttttctgcatctatttagataatcatgtggtttttgtcattggttctgtttatgtgatgaattgcatttattgatttgtgtctgttgaaccagccttcatcccagggatgaagccgacttgattgtggcagataagctttttgatgtgctgctggatttgatttgccagtattttattgaggattttcacattgatgttcatcagagatattggccagaagttttcttattttgttctgtctctgccaggttttagtatcaggatgatgctgggcttataaaattagttagggagaagtccctcattttgaattgtttgaaatagttccagaaggagtggtaccaactcctttttgtacctctggtggaattcgactgtgagtccatctggtgctgggctttttttggttgttaggctatttattactgcttcaatttcagaatttgttattggtctattcaaggatttgacttcttcctggtttagtcttgggagggtgtatgcatccaggaatttattcatttcttctagattttctagtttgtttgcat-gagatgtttatagtattctctgatggtagtttgtatttttatggggtcagtggtgatatgccctttatcatttatattgtgtctatttgattcttctc-ttttttcttctttattagtctagctagcagtctatctattttattaatgtcttcaaaaaagaaacaacttctggatttattgatttgctgaagcattttcttgtgtctgtctcttcttcagttcttctccgatcttagttatttcttgttttctgctaaattttggatttatttgcccttgctcctctagttctttt-gttgtgatgttagggtgtcagtttgagttctttctagtgctacaaatttccctctaaacattgctttagctgcatcccagagattctggtatgttgtctctttgttcttattggtttcaagaatggtttagtttctgccttaatttcattatttacctaggagtcagtcaggagcaggttgttcaatttccatgtcgttgttggttttgagtgaggttcttaatcctgagttctaatttgattgaactgtggtctgagagactgtt----atga-tttcagttcttttgcatttgttgaggagtgcttctcttcccattatgtgatcgattttagagtaaatgccacgtggcactgagaagaatgtatattctgttgtttcaggctggaagggcttgcagatatctatcaggttcacttgatccagagccaagttcaagtcctgaatatccttgttagttttctgtcttgatgatctgtctaatgttgagaatggggtgttaaagtctcttagtattattgtgtggaagtctgcgtctctttgtagctctctaagagcttgcttcatgaatctgggtgctcctgtattgggtgcatatacatttaggatagttagctctccttgttgaagtgacccctttaccattatgttatcccctcctttgtg-----tttttt----atcttttttggtttaaagtatgttttatcagaaactaggattacaatccttgcttttctctactttccatttgcttggtaaattttttccatccctttattttgagcctatgtgtgtcctggcacatgtcaaggatctcctgaatacagcacactgaggggtcttgactctttatccaatttgccagtctgtgtcttttaatt-gggtcatttagcccatttacctttaaggttaatattgttatatgtgaatttgatcctgtcatcatgatgctagctggttattttgcacacgagttgatgcagtttctttatagtgtcattgatccttgtatttcagtgtgtttttgcagtggctggtactggtttttcctttctgccccc----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29826438 3011 + 173848474 tcttctaggatttttatcgttttaggttttacatttaagtctttaatacatcttgagttaatttttgtataaggtgtaaggaaggggtctagtttcagtttgctgcatatggctagcccattttcccagcaccatttattaaatagggaatcatttccccattgcttgtttttgtcaggtttgttgcaattcagatggttgtagatgtgctgtcttatttctgatctgttggtctatgtgtctgctttggtaccagtaccatgctgttttggttactgtagccttgtattatagtttgaagtcaggtggcattatgcctccagctgtgttctttttgcttaggattgtcttggctatacaggctccttcttggttccatatgagttttaaagtagcctttttttttt----ttaattctctgaagaatgtcaatggtagtttgatgggaatagcattgaatctataaattactttggacagcatggctattttcacaatattggttcctcgtatccacaaggatgaaatgtttttccatttgtttgtgtcctcttctaattccttgagaagtggcttgtagttctcctt---gaagtctttcacatcccttgttagctgtattcctaggtattttattctctttgtagcaattatgaatgaaggttcattcatgatttggttctctgtttgtctattgttggtgtatagaaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgtttatcagcttaaggagattttgggctgagacgatggggttttctaaatatacaatgtcatctgcaaacagagacaatttgatttccagtctttttattcaaatacgctttatttctttctcttgcctgattgccctggccagaacatccaatactatgttgaataggaatggtgaaagaggatttcgctgtcttgtgatagttttcaaagggaatgcttccagcttttgcctattcagtatgatattggctgtgggtttgtcataaatagctcttattattttgagatatgttccatcaatacctagtttattgaaagtttttagtatgaagggatgttgaaatttatcggaggccttttctgcatctatttagataatcatgtggtttttgtcattggttctgtttatgtgatgaattgcatttattgatttgtgtctgttgaaccagccttcatcccagggatgaagccgacttgattgtggcagataagctttttgatgtgctgctggatttgatttgccagtattttattgaggattttcacattgatgttcatcagagatattggccagaagttttcttattttgttctgtctctgccaggttttagtatcaggatgatgctgggcttataaaattagttagggagaagtccctcattttgaattgtttgaaatagttccagaaggagtagtaccaactcctttttgtacctctggtggaattcgactgtgagtccatctggtgctgggctttttttggttgttaggctatttattactgcttcaatttcagaatttgttattggtctattcaaggatttgacttcttcctggtttagtcttgggagggtgtatgcatccaggaatttattcatttcttctagattttctagtttgtttgcat-gagatgtttatagtattctctgatggtagtttgtatttttatggggtcagtggtgatatgccctttatcatttatattgtgtctatttgattcttctc-ttttttcttctttattagtctagctagcagtctatctattttattaatgtcttcaaaaaagaaacaacttctggatttattgatttgctgaagcattttcttgtgtctgtctcttcttcagttcttctccgatcttagttatttcttgttttctgctaaattttggatttatttgcccttgctcctctagttctttt-gttgtgatgttagggtgtcagtttgagttctttctagtgctacaaatttccctctaaacattgctttagctgcatcccagagattctggtatgttgtctctttgttcttattggtttcaagaatggtttagtttctgccttaatttcattatttacctaggagtcagtcaggagcaggttgttcaatttccatgtcgttgttggttttgagtgaggttcttaatcctgagttctaatttgattgaactgtggtctgagagactgtt----atga-tttcagttcttttgcgtttgttgaggagtgcttctcttcccattatgtgatcgattttagagtaaatgccacgtggcactgagaagaatgtatattctgttgtttcaggctggaagggcttgcagatatctatcaggttcacttgatccagagccaagttcaagtcctgaatatccttgttagttttctgtcttgatgatctgtctaatgttgagaatggggtgttaaagtctcttagtattattgtgtggaagtctgcgtctctttgtagctctctaagagcttgcttcatgaatctgggtgctcctgtattgggtgcatatacatttaggatagttagctctccttgttgaagtgacccctttaccattatgttatcccctcctttgtg-----tttttt----atcttttttggtttaaagtatgttttatcagaaactaggattacaatccttgcttttctctactttccatttgcttggtaaattttttccatccctttattttgagcctatgtgtgtcctggcacatgtcaaggatctcctgaatacagcacactgaggggtcttgactctttatccaatttgccagtctgtgtcttttaatt-gggtcatttagcccatttacatttaaggttaatattgttatatgtgaatttgatcctgtcatcatgatgctagctggttattttgcacacgagttgatgcagtttctttatagtgtcattgatccttgtatttcagtgtgtttttgcagtggctggtactggtttttcctttctgccccc----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5629253 3005 +   6154872 tcttcta-gatttttatcgttttaggttttacatttaagtctttaatacatcttgagttaatttttgtataaggtgtaaggaaggtgtctagtttcagtttgctgcatatggctagcccgttttcccagcaccatttattaaatagggaatcatttccccattgcttgtttttgtcaggtttgttgcaattcagatggttgtagatgtgccgtcttatttctgatctgttggtctatgtgtctgctttggtaccagtaccatgctgttttggttactgtagccttgtattatagtttgaagtcaggtggcattatgcctccagctgtgttctttttgcttaggattgtcttggctatacaggctccttcttggttccatatgagttttaaagtagcctttttttttt------aattctctgaagaatgtcaatggtagtttgatgggaatagcattgaatctataaattactttggacagcatggctattttcacaatattggttcctcgtttccacaaggatgaaatgtttttccatttgtttgtgtcctctcctaattccttgagaagtggtttgtagttctcctt---gaagtctttcacatcccttgttagctgtgttcctaggtattttattctctttgtagcaattatgaatgaaggttcattcatgatttggttctctgcttgtctattgtt-gtgtatagaaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgtttatcagcttaaggagattttgggctgagaagatggggctttctaaatatacaatgtcatctgcaaacagagacaatttgatttccagtctttttattcaaatacgctttatttctttctcttgcctgattgccctggtcagaacatctaatactatgttgaataggaatggtgaaagagggtttccctgtcttgtgacagttttcaaagggaatgcttccagcttttgcctattcagtatgatattggctgtgggtttgtcataaatagctcttattattttgagatatgttccatcaatacctagtttattgaaagtttttagtatgaagggatgttgaaatttattggaggccttttctgcatctatttaggtaatcatgtggtttttgtcattggttctgtttatgtgatgaattgcatttattgatttgtgtatgttgaaccagccttcatcccagggatgaagccgacttgactgtggcggataagctttttgatgtgctgctggatttggtttgccagtattttattgaggattttcacattgatgttcatcagagatactggccagaggttttcttattttgttccgtctctgccaggttttcgtatcaggatgatgctgggcttataaaattagttagggagaagtccctccttttgaattgtttgaaatagttccagaaggagtggtaccaactcctttttgtacctctggtggaattcgactgtgagtccatctggtgctgggctttttttggttgttaggctatttattactgcttcaatttcagaatttgttattggtctgttcaaggatttgacttcttcctggtttagtcttcggagggtgtatgcatacaggaatttattcatttcttctagattttctagtttatttgcat-gagatgtttatagtattctctgatggtagtttgtatttttatggggtcagtggtgatatgccctttatcatttatattgtgtctatttgattcttctc--tttttcttctttatcagtctagctagcagtctatctattttattaatgtcttc-aaaaagaaacaacttctggatttattgatttgctgaagcattttcttgtgtctctctcttcttcagttcttctccgatcttagttatttcttgttttctgctaacttttggatttatttgcccttgctcctctagttctttt-gttgtgatgttagggtgtcagtttgagttctttctagtgctacagatttccctctaaacattgctttagctgcat-ccagagattctggtatgttgtctctttgttcttattggtttcaagaatggtttagtttctgccttaatttcattatttacctaggagtcagtcaggagcaggttgttcaatttccatgtcgttgttggttttgagtgaggttcttaatcctgagttctaatttgattgaactgtggtctgagagactgtttgttatga-tttcagttcttttgcatttgttgaggagtgcttcacttcccattatgtgatcgattttagaggaaatgccacatggcactgagaagaatgtatattctgttgtttcaggctggaagggcttgtagatatctatcaggttcacttgatccagagccaagttcaagtcctgaatatccttgttagttttctgtcttgatgatctgtctaatgttgataatggggtgttaaagtctcttagtattattgtgtggaagtctacgtctctttgtagctctctaagagcttgcttcatgaatctgggtgctcctgtattgggtgcatatacatttaggatagttagctctccttgttgaattgacccctttaccattatattatcccgtcctttgtg-----tttttt----atcttttttggtttaaagtctgttttatcagaaactaggattacaatccttgcttttctctactttccatttgcttggtaaattttttccatccctttattttgagcctatgtgtgtcctggcacatgtcaaggatctcctgaatacagcacactgaggggtcttgactctttatccaatttgccagtctgtgtcttttaatt-gggtcatttagcccatttacatttaaggttaatgttgttatatgtgaatttgatcctg---tcatgatgctagctggttattttgcacacgaattgatgcagtttctttatagtgtcattgatccttgtatttcagtgtgtttttgcagtggctggtactggtttttcctttctgccccc----
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29857315 3014 + 172585720 tcttctaggatttttatggttttgggttttacatttaagtctttaatacatcttgagttaacttttgtataaggtgttaggaacgggtccagtttcagtttgctgcatatggctagcccattttcccagcaccatttattaaatagggaatcatttccccattgcttgtttttgtcaggtttgttgaaattcagatggttgtagatgtgctgtcttatttctgatctattggtctatgtgtctgctttggtaccagtaccatgctgttttggttactgtagccttgtattatagtttgaagtcaggtgtctttatgcttccagctatgttctttttgcttaggattgtcctgactatataggttctttcttggttccatatgagttttaaagtagc------ttttt-aaaaaaattctgtgaagaatgtcaatggtagtttgatgggaatagcatcaaatctgtaaattactttgggaagcatggctattttcacaatattcattcttcatatccacaaggatgaaatgtttttccatttgtttgtgtcctcttctaattccttgagaagtggtttgtagttctctttgaagaagtccttcacatctcttgttagctgtattcctaggtattttattgtctttgtagcaattatgaatggaggttcattcatgatttggttctctgcttgtctgttgttggtgtataggaatgcttgtgatttttgcacattgattttgtatcctgagactttgctaaa----tttatcagcttaaggaaattttgggctgagacaatggggttttctaaatatacaatgtcatctacaaacaaagacaatttgatttcctctctttttattcaaatacgctttatttctttctcttgcctgattgccctggccagaacttccaatacaatgttgaataggagtggtgaaagagggtttccttgtcttgtgacagttttcagagggaatgcttccagcttttgcccattcagtatgatattggctgtgggcttgtcataaatagctcttattattttgagatacgttccatcaatatctagtttattgaaagtttttagtataaagggatgttgaaatttattgaaggccttttctgcatctattgagataatcatgtggtttttgttattggttctgtttatgtgatgaattgcatttattgatttgtttatgttgaaccagtcttcttcccagggatgaagctgacttgatcatggcagataagctttttgatgtgctgctggatttggtttgccagtattttactgaggattttcacattgatgttcatcagagatattggccagaagttttcttattttgttctgtctctgtcaggttttagtatcaggatgatgctgggctcataaaattagttagggagaagtccctccttttgaattgtttgaaatagttccagaaggagtggtaccagctcctttttgtacctctggtggaatttgactgtgagtccatctggtgctgggctttttttggttgttaggctatttattactgcttcaattttagaacttgttattggtctattcaaggatttgacttcttcctggtttagtcttggaagggtgtatgtgtccaggaatttattcatttcttctagattttctagtttatttgcatagaaatgtttataatattctctaatggtagtttgtatttctgtggggtcagtggtgatatgccctttatcatttatattgtgtctatttgattcttctctttttttcttctttattagtctagctaccagtctatctattttattaatgtcttcaaaaaagaaacaacttctggatttattgatttggtgaagcatgtttttgtgtctctctcttcttcagttcttttcccatgttagctatttcttgttttctgctagcttttggatttatttgcccttgcttctctagttcttttagttgtgatgttagggtgtcaatttgagttctgtctagtgctacaaatttccctcttaacattgctttagctgcatcccaaagattctggtatgaagtctctttgttcttattggtttcaagaaaggtttagtttctgccttaatttcattatttacctaggagtcagtcaggagcaggttgttcaacttccatgtc---gttggttttgagtgagtttcttaatcctgaattctaatttgattgaactgtggtctgagagactgtt----atgattttcagttcttttgcatttgctgaggcgtgctttacttccaatcatgtgatcgattttagagtaaatgccacatggcactgagatgaacgtatattctgttgtttcaggctggaggggcttgtagatatctattagattcacttgatcccgagccaagttcaagtcctgaatatacttgttaattttctgtctcaatgatctgtctaatgttgagaatggggtgttaaagtctcttactattattgtgcggaagtctacatctctttgcagcttcctaagaacttgcttcttgaatctggatgctcctgtattgtatgcatatacatttaggataattagctctccttgttgaattgacccctttaccattatgttatcccctcctttgtg-----tttttttttaatcttttttggtttaaagtctgttttgtcagagactaggattacaatccttgctcttctctacttttcatttccttgctaaattttttccattcgtttattttgagcctatgtatgtcctggcacacgtcaaggatgtcttgaatatagcacattgatgggtcttgactc--tatccaatttaccagtctgtgtcttttaatt-ggggcatttagcccatttacatttaaggttaatattgttatatgtgaatctgatcctgtcatcatgatgctagctggttattttgcacgtgagttgatgcagtttctttatagtgtcattggtccttgtatttcagtatgtttttgcagtggctggcactggttcttcctttcTGCCCCCACTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29520288 3014 - 170955103 tcttctaggatttttatggttttgggttttacatttaagtctttaatacatcttgagttaacttttgtataaggtgttaggaacgggtccagtttcagtttgctgcatatggctagcccattttcccagcaccatttattaaatagggaatcatttccccattgcttgtttttgtcaggtttgttgaaattcagatggttgtagatgtgctgtcttatttctgatctattggtctatgtgtctgctttggtaccagtaccatgctgttttggttactgtagccttgtattatagtttgaagtcaggtgtctttatgcttccagctatgttctttttgcttaggattgtcctgactatataggttctttcttggttccatatgagttttaaagtagc------ttttt-aaaaaaattctgtgaagaatgtcaatggtagtttgatgggaatagcatcaaatctgtaaattactttgggaagcatggctattttcacaatattcgttcttcatatccacaaagatgaaatgtttttccatttgtttgtgtcctcttctaattccttgagaagtggtttgtagttctctttgaagaagtccttcacatcccttgttagctgtattcctaggtattttattgtctttgtagcaattatgaatggaggttcattcatgatttggttctctgcttgtctgttgttggtgtataggaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaa----tttatcagcttaaggaaattttgggctgagacaatggggttttctaaatatacaatgtcatctacaaacaaagacaatttgatttcctctctttttattcaaatacgctttatttctttctcttgcctgattgccctggccagaacttccaatacaatgttgaataggagtggtgaaagagggtttccttgtcttgtgacagttttcagagggaatgcttccagcttttgcccattcagtatgatattggctgtgggcttgtcataaatagctcttattattttgagatacgttccatcaatatctagtttattgaaagtttttagtataaagggatgttgaaatttattgaaggccttttctgcatctattgagataatcatgtggtttttgttattggttctgtttatgtgatgaattgcatttattgatttgtttatgttgaaccagtcttcttcccagggatgaagctgacttgatcatggcagataagctttttgatgtgctgctggatttggtttgccagtattttactgaggattttcacattgatgttcatcagagatattggccagaagttttcttattttgttctgtctctgtcaggttttagtatcaggatgatgctgggctcataaaattagttagggagaagtccctccttttgaattgtttgaaatagttccagaaggagtggtaccagctcctttttgtacctctggtggaatttgactgtgagtccatctggtgctgggctttttttggttgttaggctatttattactgcttcaattttagaacttgttattggtctattcaaggatttgacttcttcctggtttagtcttggaagggtgtatgtgtccaggaatttattcatttcttctagattttctagtttatttgcatagaaatgtttatagtattctctaatggtagtttgtatttctgtggggtcagtggtgatatgccctttatcatttatattgtgtctatttgattcttctctttttttcttctttattagtctagctaccagtctatctattttattaatgtcttcaaaaaagaaacaacttctggatttattgatttggtgaagcatgtttttgtgtctctctcttcttcagttcttttcccatgttagctatttcttgttttctgctagcttttggatttatttgcccttgcttctctagttcttttagttgtgatgttagggtgtcaatttgagttctgtctagtgctacaaatttccctcttaacattgctttagctgcatcccaaagattctggtatgaagtctctttgttcttattggtttcaagaaaggtttagtttctgccttaatttcattatttacctaggagtcagtcaggagcaggttgttcaacttccatgtc---gttggttttgagtgagtttcttaatcctgaattctaatttgattgaactgtggtctgagagactgtt----atgattttcagttcttttgcatttgctgaggcgtgctttacttccaatcatgtgatcgattttagagtaaatgccacatggcactgagaagaacgtatattctgttgtttcaggctggaggggcttgtagatatctattagattcacttgatcccgagccaagttcaagtcctgaatatacttgttaattttctgtctcaatgatctgtctaatgttgagaatggggtgttaaagtctcttactattattgtgcggaagtctacatctctttgcagcttcctaagaacttgcttcttgaatctggatgctcctgtattgtatgcatatacatttaggataattagctctccttgttgaattgacccctttaccattatgttatcccctcctttgtg-----ttttttttaaatcttttttggtttaaagtctgttttgtcagagactaggattacaatccttgctcttctctacttttcatttccttgctaaattttttccattcctttattttgagcctatgtatgtcctggcacacgtcaaggatgtcttgaatatagcacattgatgggtcttgactc--tatccaatttaccagtctgtgtcttttaatt-ggggcatttagcccatttacatttaaggttaatattgttatatgtgaatctgatcctgtcatcatgatgctagctggttattttgcacatgagttgatgcagtttctttatagtgtcattggtccttgtatttcagtatgtttttgcagtggctggcactggttcttcctttcTGCCCCCACTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2507094 3010 -   2996164 tcttctaggatttttatggttttgggttttacatttaagtctttaatacatcttgaattaacttttgtataaggtgtaaggaatgggtccagtttcagtttgctgcatatggctagcccattttcccagcaccatttattaaatagggaatcttttccccattgcttgtttttgtcaggtttgttgaaattcagatggttgtagatgtgccgtcttatttctgatctactggtctttgtgtctgctttggtaccagtaccatgctgttttggttactgtagccttgtattatagtttgaagtcaggtgtctttatgcttccagttatgttctttttgcttaggattgtcttggctatacaggttccttcttggttccatatgagttttaaagtagc------tttttaaaaaaaattctgtgaagaatgtcaatggtagtttgatgggaatagcattgaatctgtaaattactttgggaagcatggctattttcacaatattcgttcttcatatccacaaggatgaaatgtttttccatttgtttgtgtcctcttctaattccttgagaagtggtttgtagttctctttgaagaagtccttcacatcccttgttagctgtattcctaggtattttattatctttgtagcaattatgaatggaggttcgttcatgattttgttctctgcttgtctgttgttggtgtataggaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaa----tttatcagcttaaggaaattttgggctgagacagtggggttttctaaatatacaatgtcatctgcaaacaaagacaatttgatttcctctctttttattcaaatacgctttatttctttctcttgcctgattgccctggccaaaacttccaatacggtgttgaataggagtggtgaaagagggtttccttgtcttgtgacagttttcagagggaatgcttccagcttttgcccattcagtatgatattggctgtgggtttgtcataaatagctcttattattttgagatacattccatcaatatctagtttattgaaagtttttagtataaagggatgttgaaatttattgaaggccttttctgcatctattgagataatcatg----ttttgttattggttctgtttatgtgatgaattgcatttattgatttgcttatgttgaaccaaccttcttcccagggatgaagctgacttgatcacggcagataagctttttgatgtgctgctggatttggtttgccagtattttattgaggattttcacattgatgttcatcagagatattggccagaagttttcttattttgttctgtctctgtcaggttttagtatcaggatgatgctgggctcataaaattagttagggagaagtccctccttttgaattgtttgaaatagttccagaaggagtggtaccagctcctttttgtacctctggtggcatttgactgtgagtccatctggtgctgggctttttctggttgttaggctatttattactgcttcaattttagaacttgttattggtctattcaaggatttgacttcttcctggtttagtcttggaagggtgtatgtgtccaggaatttattcatttcttctagattttctagtttatttgcatagaaatgtttatagtattctctaatggtagtttgtatttctgtggggtcagtggtgatatgccctttatcatttatattgtgtctatttgattcttctc-ttttttcttctttattagtctagctaccagtctatctattttattaatgtcttcaaaaaagaaacaacttctggatttattgatttggtgaagcctttttttgtgtctctctcttcttcagttcttttcccatgttagctatttcttgttttctgctagcttttggatttatttgcccttgcttctctagttcttttagttgtgatgttagggtgtcaatttgagttctgtctagtgctacaaatttccctcttaacattgctttagctgcatcccaaagattctggtgtgaagtctctttgttcttattggtttcaagaaaggtttagtttctgccttaatttcattatttacctaggagtcagtcaggagcaggttgttcaacttccatgtc---gttggttttgagtgagtttcttaatcctgaattctaatttgattgaactgtggtctgagagactgtt----atgattttcagttcttttgcatttgctgaggtgtgctttacttccaatcatgtgatcgattttagagtaaatgccacatggcactgagatgaatgtatattctgttgtttcaggctggaggggcttgtagatatctattagattcacttgatcccgagccaagttcaagtcctgaatatccttgttaattttctgtctcaatgatctgtctaatgttgagaatggggtgttaaagtctcttactattattgtgtagaagtctacatctctttgcagcttcctaagaacttgcttcttgaatctgggtgctcctgtattggatgcatatacatttaggatagttagctctccctgttgaattgacccctttaccattatgttatcccctcctttgtg-----tttttttttcatcttttttggtttaaagtctgttttgtcagagactaggattacaatccttgcttttctctacttttcatttcctcgctaaattttttccatccctttattttgagcctatgtatgtcctggcacatgtcaaggatgtcttgaatatagcacactgatgggtcttgactc--tatccaatttaccagtctgtgtcttttaatt-ggggcatttagcccatttacatttaaggttaatattgttatatgtgaatttgatcctgtcatcatgatgctagctggttattttgcacatgagttgatgcagtttctttatagtgtcattggtccttgtatttcagtatgtttttgcagtggctggcactggttcttcctttcTGCCCCCACTC
i macNem1.NW_012011356v1   I 315 C 0
s cerAty1.NW_012002711v1     252863 3016 +    766320 tcttctaggatttttatggttttgggttttacatttaagtctttaatacatcttgagttaacttttgtataaggtgttaggaacgggtccagtttcagtttgctgcatatggctagcccattttcccagcaccatttattaaatagggaatcatttccccattgcttgtttttgtcaggtttgttgaaattcagatggttgtagatgtgctgtcttatttctgatctattggtctatgtgtctgctttggtaccagtaccatgctgttttggttactgtagccttgtattatagtttgaagtcaggtgtctttatgcttccagctatgttctttttgcttaggattgtcttggctatacaggttccttcttggttccatatgagttttaaagtagc------tttta-aaaaaaattatgtgaagaatgtcaatggtagtttgatgggaatagcatcaaatctgtaaattactttgggaagcatggctattttcacaatattcattcttcatatccacaaggatgaaatgtttttccatttgtttgtgtcctcttctaattccttgagaagtggtttgtagttctctttgaagaagtccttcacatcccttgttagctgtattcctaggtattttattgtctttgtagcaattatgaatggaggttcattcatgatttggttctctgcttgtctgttgttggtgtataggaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaa----tttatcagcttaaggaaattttgggctgagacaatggggttttctaaatatacaatgtcatctgcaaacaaagacaatttgatttcctctctttttattcaaatacgctttatttctttctcttgcctgattgccctggccagaacttccaatacgatgttgaataggagtggtgaaagagggtttccttgtcttgtgacagttttcagagggaatgcttcctgcttttgctcattcagtatgatattggctgtgggtttgtcataaatagctcttattattttgagatacgttccatcaatatctagtttattgaaagtttttagtataaagggatgttgaaatttattgaaggccttttctgcatctattgagataatcatgtggtttttgttattggttctgtttatgtgatgaattgcatttattgattggtttatgttgaaccagtcttcttcccagggatgaagctgacttgatcatggcagataagctttttgatgtgctgctggatttggtttgccagtattttattgaggattttcacattgatgttcatcagagatattggccagaagttttcttattttgttctgtctctgtcaggttttagtatcaggatgatgctgggctcataaaattagttagggagaagtccctccttttgaattgtttgaaatagttccagaaggagtggtaccagctcctttttgtacctctggtggaatttgactgtgagtccatctggtgctgggctttttttggttgttaggctatttattactgcttcaattttagaacttgttattggtctattcaaggatttgacttcttcctggtttagtcttggaagggtatatgtgtccaggaatttattcatttcttctagattttctagtttatttgcatagaaatgtttatagtattctctaatggtagtttgtatttctgtggggtcagtggtgatatgccctttatcatttatattgtgtctatttgattcttctctttttttcttctttattagtctagctaccagtctatctgttttattaatgtcttcaaaaaagaaacaacttctggatttattgatttggtgaagcatttttttgtgtctctctcttcttcagttcttttcccatgttagctatttcttgttttctgctagcttttggatttatttgcccttacttctctagttcttttagttgtgatgttagggtgtcaatttgagttctgtctagtgctacaaatttccctcttaacattgctttagctgcatcccaaagattctggtatgaagtctctttgttcttattggtttcaagaacggtttagtttttgccttaattttattatttacctaggagtcagtcaggagcaggttgttcaacttccatgtc---gttggttttgagtgagtttcttaatcctgaattctaatttgattgaactgtggtctgagagactgtt----atgattttcagttcttttgcatttgctgaggcgtgctttacttccaatcatgtgatcgattttagagtaaatgccacatggcactgagatgaacgtatattctgttgtttcaggctggaggggcttgtagatatctattagattcacttgatcccgagccaagttcaagtcctgaaaatacttgttaattttctgtctcaatgatctgtctaatgttgagaatggggtgttaaagtctcttactattattgtgtggaagtctacatctctttgcagctctctaagaacttgcttcttgaatctggatgctcctgtattgtatgcatatacatttagggtagttagctctccttgttgaattgacccctttatcattatgttatccccacctttgtg---tttttttttttaatcttttctggtttaaagtctgttttgtcagagactaggattacaatccttgcttttctctacttttcatttccttgctaaattttttccattcctttattttgagcctatgtatgtcctggcacacgtcaaggatgtcttgaatatagcacattgatgggtcttgactc--tatccaatttaccagtctgtgtcttttaatt-ggggcatttagcccatttacatttaaggttaatattgttatatgtgaatttgatcctgtcatcatgatgctagctggttattttgcacgtgagttgatgcagtttctttatagtgtcattggtccttgtatttcagtatgtttttgcagtggctggcactggttcttcctttcTGCCCCCACTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28761610 3019 -  71996105 tcttctaggatttttatggttttgggttttacatttaagtctttaatacatcttgaattaacttttgtataaggtgtaaggaatgggtccagtttcagtttgctgcatatggctagcccattttcccagcaccatttattaaatagggactcatttccccattgcttgtttttgtcaggtttgttgaaattcagatggttgtagatgtgccgtcttatttctgatctactggtctatgtgtctgctttggtaccagtaccatgctgttttggttactgtagccttgtattatagtttgaagtcaggtgtctttatgcttccagttatgttctttttgcttaggattgtcttgtctatacaggttccttcttggttccatatgagttttaaagtagc------ttttt-aaaaaaattctgtgaagaatgtcaatggtagtttgatgggaatagcattgaatctgtcaattactttgggaagcatggctattttcacaatattcgttcttcatatccacaaggatgaaatgtttttccatttgtttgtgtcctcttctaattccttgagaagtggtttgtagttctctttgaagaagtccttcatatcccttgttagctgtattcctaggtattttattatctttgtagcaattatgaatggaagttcattcatgatttggttctctgcttgtctgttgttggtgtataggaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaa----tttatcagcttaaggaaattttgggctgagacaatggggttttctaaatatacaatgtcatctgcaaacaaagacaatttgatttcctctctttttattcaaatacgctttatttctttctcttgcctgattgccctggccaaaacttccaatatggtgttgcataggagtggtgaaagagggtttccttgtcttgtgacagttttcagagggaatgcttccagcttttgcccattcagtatgatattggctgtgggtttgtcataaatagctcttattattttgagatacattccatcaatatctagttaattgcaagtttttagtataaagggatgttgaaatttattgaaggccttttctgcatctattgagataatcatgtggtttttgttattggttctgtttatgtgatgaattgcatttactgatttgcttatgttgaaccaaccttcttcccagggatgaagctgacttgatcatggcagataagctttttgatgtgctgctggatttggtttgccagtattttattgaggattttcacgttgatgttcatcagagatattggccagaagttttcttattttgttctgtctctgtcaggttttagtatcaggatgatgctgggctcataaaattagttagggagaagtccttccttttgaattgtttgaaatagttccagaaggagtggcaccagctccttttggtacctctggtggaatttgactgtgagtccatctggtgctgggctttttctggttgttaggctatttattactgcttcaattttagaacttgttattggtctattcaaggatttgacttcttcctggtttagtcttggaagggtgtatgtgtccaggaatttattcatttcttctagattttctagtttatttgcatagaaatgtttatagtattctctaatggtagtttgtatttctgtggggtcagtggtgatatgccctttatcatttatattgtgtctatttgattcttctc-ttttttcttctttattagtctagctaccagtctatctattttattaatgtcttcaaaaaagaaacaacttatggatttattgatttggtgaagcatttttttgtgtctctctcttcttcagttcttttcccatgttagctatttcttgttttctgctagcttttggatttatttgcccttgcttctctagttcttttagttgtgatgttagggtgtcaatttgagttctgtctagtgctacaaatttccctcttaacattgctttagctgcatcccagagattctggtatgaagtctctttgttcttattggtttcaagaacggtttagtttctgccttaatttcattatttacctaggagtcagtcaggagcaggttgttcaacttccatgtc---attggttttgagtgagtttcttaatcctgaattctaatttgattgaactgtggtctgagagactgtt----atgattttcagttcttttgcatttgctgaggtgtgctttacttccaatcatgtgatcgattttagagtaaatgccacatggcactgagaagaacgtatattctgttgtttcaggctggaggggcttgtagatatctattagattcacttgatccccagccaagttcaagtcctgaatatctttgttaattttctgtctcaatgatctgtctaatgttgagaatggggtgttaaagactcttactattattgtgtggaagtctacatctctttgcagctttctaagaacttgcttcttgaatctgggtgctcctgtattggatgcatatacattcaggatagttagctctccttgttgaattgacccttttaccattatgttatcccctcctttgtgtgttttttttttttagtcttttttggtttaaagtctgctttgtcagagactaggattacaatccttgcttttctctacttttcatttcctcgctaaattttttccatcccttaattttgagcctatgtgtgtcctggcacatgtcgaggatgtcttgaatatagcacactggtgggtcttgactc--tatccaatttaccagtctgtgtcttttaattgggggcatttagcccatttacatttaaggttaatattgttatatgtgaatttgatcctgtcatcatgatgctagctggttattttgcacatgagttgatgcagtttctttatagtgtcattggtccttgtatttcagtatgtttttgcagtggctggcactggttcttcctttcTGCCCCCACTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     237027 3015 -    352859 tcttctaggatttttatggttttgggttttacatttaagtctttaatacatcttgagttaacttttgtataaggtgttaggaacgggtccagtttcagtttgctgcatatggctagcccattttcccagcaccatttattaaatagggaatcatttccccattgcttgtttttgtcaggtttgttgaaattcagatggttgtagatgtgctgtcttatttctgatctattggtctatgtgtctgctttggtaccagtaccatgctgttttggttactgtagccttgtattatagtttgaagtcaggtgtctttatgcttccagctatgttctttttgcttaggattgtcttggctatacaggttccttcttggttccatatgagttttaaagtagc------ttttt-taaaaaattctgtgaagaatgtcaatggtagtttgatgggaatagcatcaaatctgtaaattactttgggaagcatggctattttcacaatattcattcttcatgtccacaaggatgaaatgtttttccatttgtttgtgtcctcttctaattccttgagaagtggtttgtagttctctttgaagaagtccttcacatcccttgttagctgtattcctaggtattttattgtctttgtagcaattatgaatggaggttcattcatgatttggttctctgcttgtctgttgttggtgtataggaatgtttgtgatttttgcacattgattttgtatcctgagactttgctgaa----tttatcagcttaaggaaattttgggctgagacaatggggttttctaaatatacaatgtcatctgcaaacaaagacaatttgatttcctctctttttattcaaatacgctttatttctttctcttgcctgattgccctggccagaacttccaatacgatgttgaataggagtggtgaaagagggtttccttgtcttgtgacagttttcagagggaatgcttccagcttttgctcattcagtatgatattggctgtgggtttgtcacaaatagctcttattattttgagatacattccatcaatatctagtttattgaaagtttttagtataaagggatgttgaaatttattgaaggccttttctgcatctattgagataatcatgtggtttttgttattggttctgtttatgtgatgaattgcatttattgattggtttatgttgaaccagtcttcttcccagggatgaagctgacttgatcatggcagataagctttttgatgtgctgctggatttggtttgccagtattttattgaggattttcacattgatgttcatcagagatattggccagaagttttcttattttgttctgtctctgtcaggttttagtatcaggatgatgctgggctcataaaattagttagggagaagtccctccttttgaattgtttgaaatagttccagaaggagtggtaccagctcctttttgtacctctggtggaatttgactgtgagtccatctggtgctgggctttttttggttgttaggctatttattactgcttcaattttagaacttgttattggtctattcaaggatttgacttcttcctggtttagtcttggaagggtatatgtgtccaggaatttattcatttcttctagattttctagtttatttgcatagaaatgtttatagtattctctaatggtagtttgtatttctgtggggtcagtggtgatatgccctttatcatttatattgtgtctatttgattcttctctttttttcttctttattagtctagctaccagtctatctattttattaatgtcttcaaaaaagaaacaactcctggatttattgatttggtgaagcatttttttgtgtctctctcttcttcagttcttttcccatgttagctatttcttgttttctgctagcttttggatttatttgcccttacttctctagttcttttagttgtgatgttagggtgtcaatttgagttctgtctagtgctacaaatttccctcttaacattgctttagctgcatcccaaagattctggtatgaagtctctttgttcttattggtttcaagaacggtttagtttctgccttaattttattatttacctaggagtcagtcaggagcaggttgttcaacttccatgtc---gttggttttgagtgagtttcttaatcctgaattctaatttgattgaactgtggtctgagagactgtt----atgattttcagttcttttgcatttgctgaggcgtgctttacttccaatcatgtgatcgattttagagtaaatgccacatggcactgagatgaacgtatattctgttgtttcaggctggaggggcttgtagatatctattagattcacttgatcccgagccaagttcaagtcctgaatatacttgttaattttctgtctcaatgatctgtctaatgttgagaatggggtgttaaagtctcttactattattgtgtggaagtctacatctctttgcagctctctaagaacttgcttcttgaatctggatgctcctgtattgtatgcatatacatttagggtagttagttctccttgttgaattgacccctttatcattatgttatcccctcctttatg----ttttttttttaatcttttttggtttaaagtctgttttgtcagagactaggattacaatccttgcttttctctacttttcatttccttgctaaattttttccattcctttattttgagcctatgtatgtcctggcacacgtcaaggatgtcttgaatatagcacattgatgggtcttgactc--tatccaatttaccagtctgtgtcttttaatt-ggggcatttagcccatttacatttaaggttaatattgttatatgtgaatttgatcctgtcatcatgatgctagctggttattttgcacgtgagttgatgcagtttctttatagtgtcattggtccttgtatttcagtatgtttttgcagtggctggcactggttcttcctttcTGCCCCCACTG
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570741           484722    4 +   1532071 I
e proCoq1.NW_012152574v1     375084 2668 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2008632    0 -   2232465 C
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=67540.000000
s hg38.chr6_GL000254v2_alt   619166 14 +   4827813 catgttcatatatt
s panTro5.chr6             29591218 14 + 175400573 catgttcatatatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29829449 14 + 173848474 catgttcatatatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5632258 14 +   6154872 catgttcatatatt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29860329 14 + 172585720 CATGTTCATATatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29523302 14 - 170955103 CATGTTCATATatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2510104 14 -   2996164 CATGTTCACATatt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     255879 14 +    766320 CATGTTCATATatt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28764629 14 -  71996105 CATGTTCACATatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     240042 14 -    352859 CATGTTCATATatt
i manLeu1.NW_012099655v1   C 0 C 0
s dasNov3.JH570741           484726 14 +   1532071 CATGTTCAGATatt
i dasNov3.JH570741         I 4 C 0
e proCoq1.NW_012152574v1     375084 2668 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2008632  0 -   2232465 C
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=2422639.000000
s hg38.chr6_GL000254v2_alt   619180 509 +   4827813 tattcaggagtatttac----cacctatgataggccaggaattattctcttcttggccctaaagataaagaggtgaacaggatacataaTTCTGATAATAATAACTTTAgataactgctatgaaatgaaagaca--gagtggagttatcaagagttattgagtgggggagtggtgagaagttgtaattttaaatagattagtcaagtaactctcact---ACCACCACCACCACCATTTCAGGCAGTACCATGTGATTTAAGGAGGAATAGAAAACA---TTAGGTGGAATGATGGA------------GGAGAAAGTAGATTTTGAATTGAACTATAAAGAATGAAGAGAATTTTGAACAAATAAGGGAGGAGATGTGAATTCCAAATTAAGGGAATCGTCATAATAGTGGTATGTAGTCAGGAAAGATCAAGCCATACCTGGAGAAGAATTATTTAGGGTTCCTGCAGGAGATGA-GTTACAAAGTAGGTAGTACTTAG-ATTTTATAGACAGTGGTTACAAATAT--------ATTTAGT
s panTro5.chr6             29591232 509 + 175400573 tattcaggagtatttac----cacctatgataggccaggaattattctcttcttggccctaaagataaagaggtgaataggatacataaTTCTGATAATAATAACTTTAgataactgctatgaaatgaaagaca--gagtggagttatcaagagttattgagtgggggagtggtgagaagttgtaattttaaatagattagtcaagtaactctcact---ACCACCACCACCACCATTTCAGGCAGTACCATGTGATTTAAGGAGGAATAGAAAACA---TTAGGTGGAATGATGGA------------ggagaaagtagattttgaattgaactataaagaatgaagagaattttgaacaaataagggaggagatgtgaattccaaattaagggaatcgtcataatagtggtatgtagtcaggaaagatcaagccatacctggggaagaatTATTTAGGGTTCCTGCAGGAGATGA-GTTACAAAGTAGGTAGTACTTAG-ATTTTATAGACAGTGGTTACAAATAT--------ATTTAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29829463 509 + 173848474 tattcaggagtatttac----cacctatgataggccaggaattattctcttcttggccctaaagataaagaggtgaataggatacataaTTCTGATAATAATAACTTTAgataactgctatgaaatgaaagaca--gagtggagttatcaagagttattgagtgggggagtggtgagaagttgtaattttaaatagattagtcaagtaactctcact---ACCACCACCACCACCATTTCAGGCAGTACCATGTGATTTAAGGAGGAATAGAAAACA---TTAGGTGGAATGATGGA------------ggagaaagtagattttgaattgaactataaagaatgaagagaattttgaacaaataagggaggagatgtgaattccaaattaagggaatcgtcataatagtggtatgtagtcaggaaagatcaagccatacctggggaagaatTATTTAGGGTTCCTGCAGGAGATGA-GTTACAAAGTAGGTAGTACTTAG-ATTTTATAGACAGTGGTTACAAATAT--------ATTTAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5632272 509 +   6154872 tattcaggagtatttac----cacctatgataggccaggaattattctcttcttggccctaaagataaagaggtgaataggatacataaTTCTGATAATAATAACTTTAgataactgctatgaaatgaaagaca--gagtggagttatcaagagttattgagtgggagagtggtgagaagttgtaattttaaatagattagtcaagtaactctcact---ACCACCACCACCACCATTTCAGGCAGTACCATGTGATTTAAGGAGGAATAGAAAACA---TTAGGTGGAATGATGGA------------ggagaaagtagattttgaattgaactataaagaatgaagagaattttgaacaaataagggaggagatgtgaattccaaattcagggaatcgtcataatagtggtatgtagtcaggaaagatcaagccatacctggggaagaatTATTTAGGGTTCCTGCAGGAGATGA-GTTACAAAGTAGGTAGTACTTAG-ATTTTATAGACAGTGGTTACAAATAT--------ATTTAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29860343 513 + 172585720 tattcaacagtatttaa----cacctactataggccaggaattattctattcttggccctaaagataaagaggtgaataggataCGTAATTGTGATAATAATAACTTTtgataactgctatgaaatgaaagaca--gagtggagttatcgagagttatttagtgggggagtggtgagaagttgtaattttaaatagattcatcaagtaactctcactaccaccaccaccaccaccaTTTCAGGCAGTACTATGTGATTTAAGAAGGAATAGAAAACA---TTAGGTGGAATGATGGA------------ggagaaagtagattttgaattgaactataaagaatgaagagaactttgaacaaataagggaggagatatgaattccaaattaagggaatcgtcataatagtggtatgtagtcaggaaagatcaagccgtacctggggaataatTATTTAGGGTTCCTGCAGGAGATGAGGTTACAGGATAGATAGTACTTAG-ATTTTATAGACAGTGGTTACAAATAT--------ATTTAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29523316 513 - 170955103 tattcaacagtatttaa----cacctactataggccaggaattattctattcttggccctaaagataaagaggtgaataggataCGTAATTGTGATAATAATAACTTTtgataactgctatgaaatgaaagaca--gagtggagttatcgagagttatttagtgggggagtggtgagaagttgtaattttaaatagattcatcaagtaactctcactaccaccaccaccaccaccaTTTCAGGCAGTACTATGTGATTTAAGAAGGAATAGAAAACA---TTAGGTGGAATGATGGA------------GGAGAAAGTAGATTTTGAATTGAACTATAAAGAATGAAGAGAACTTTGAACAAATAAGGGAGGAGATATGAATTCCAAATTAAGGGAATCGTCATAATAGTGGTATGTAGTCAGGAAAGATCAAGCCGTACCTGGGGAATAATTATTTAGGGTTCCTGCAGGAGATGAGGTTACAGGATAGATAGTACTTAG-ATTTTATAGACAGTGGTTACAAATAT--------ATTTAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2510118 513 -   2996164 tattcaacagtatttaa----cacctactataggccaggaattattctattcttggtcctaaagataaagaggtgaataggataCGTAATTATGATAATAATAACTTTtgataactgctatgaaatgaaagaca--gagtggagttatcgagagttattgagtgggggagtggtgagaagttgtaattttaaatagattcatcaagtaactctcactaccaccaccaccaccaccaTTTCAGGCAGTACTATGTGATTTAAGAAGGAATAGAAAACA---TTAGGTGGAATGATGAA------------ggagaaagtagattttgaattgaactataaagaatgaagagaacttcgaacaaataagggaggagatatgaattccaaattaagggaatcgtcataatagtggtaagtagtcaggaaagatcaagccgtacctggggaagaatTATTTAGGGTTCCTGCAGGAGATGAGGTTACAAGATAGATAGTACTTAG-ATTTTACAGACAGTGGTTACAAATAT--------ATTTAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     255893 513 +    766320 tattcaacagtatttaa----cacctactataggccaggaattattctattcttggccctaaagataaagaggtgaataggataCGTAATTGTGATAATAATAACTTTtgataactgctatgaaatgaaagaca--gagtggagttatcgagagttattgagtgggggagtggtgagaagttgtaattttaaatagattcatcaagtaactttcactaccaccaccaccaccaccaTTTCAGGCAGTACTATGTGATTTAAGAAGGAATAGAAAACA---TTAGGTGGAATGATGGA------------ggagaaagtagattttgaattgaactataaagaatgaagagaactttgaacaaataagggaggagatatgaattccaaattaagagaatcgtcatagtagtggtatgtagtcaggaaagatcaagccgtacctggggaagaatTATTTAGGGTTCCTGCAGGAGATGAGGTTACAAGATAGATAGTACTTAG-ATTTTGTAGACAGTGGTTACAAATAT--------ATTTAGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28764643 513 -  71996105 tattcaacagtatttaa----cacctactataggccaggaattattctattcttggtcctaaagataaagaggtgaataggataCGTAATTATGATAATAATAACTTTtaataactgctatgaaatgaaagaca--gagtggagttatcgagagttattgagtgggggagtggtgagaagttgtaattttaaatagattcatcaagtaactctcactaccaccaccaccaccaccaTTTCAGGCAGTACTATGTGATTTAAGAAGGAATAGAAAACA---TTAGGTGGAATGATGGA------------GGAGAAAGTAGATTTTGAATTGAACTATAAAGAATGAAGAGAACTTTGAACAAATAAGGGAGGAGATATGAATTCCAAATTAAGGGAATCGTCATAATAGTGGTAAGTAGTCAGGGAAGATCAAGCCATACCTGGGGAAGAATTATTTAGGGTTCCTGCAGGAGATGAGGTTACAAGATAGATAGTACTTAG-ATTTTATAGACAGTGGTTACAAATAT--------ATTTAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     240056 513 -    352859 tattcaacagtatttaa----cacctactataggccaggaattattctattcttggccctaaagataaagaggtgaataggataCGTAATTGTGATAATAATAACTTTtgataactgctatgaaatgaaagaca--gagtggagttatcgagagttattgagtgggggagtggtgagaagttgtaattttaaatagattcatcaagtaactttcactaccaccaccaccaccaccaTTTCAGGCagtactatgtgatttaagaaggaatagaaaaca---ttaggtggaatgacgga------------ggagaaagtagattttgaattgaactataaagaatgaagagaactttgaacaaataagggaggagatatgaattccaaattaagagaatcgtcataatagtggtatgtagtcaggaaagatcaagccgtacctggggaagaatTATTTAGGGTTCCTGCAGGAGATGAGGTTACAAGATAGATAGTACTTAG-ATTTTGTAGACAGTGGTTACAAATAT--------ATTTAGT
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2008632 489 -   2232465 tattcaacagtatctactcagcacctactata----aggaatta-----ttcttgaacctgaagattaaaagataaatagaacatataaaTCAGATAATAATAACTTTTGATAACTGTTGTGAAAGGAAAGACACTAACTAGAGTTATCAAAAGTTAC----CAGGGGA---GTGAGAAGTTGTAAGTTTAAATAGGTTGGTCAAAGAATTCTCACCATCACCACTACCACCACCATTTCAGTTAGTGCCAGATGAGTTAAAAAGGAAGAGAAAGCACTTCTAGGTGGAATGATGTT------------GGTTAAAAT-GATTTTGAATGAAACTATAAAGAATCAAGAGAATTTTAAATTAAGAATTGTAGAGATAGGAATTCCAAATTAAGGGAATGGCCATAGAGGTGGTGTATAGTCAGGAAAAATCGAGTC---------------TTATCTGGAGTGTCTGCAGGAGATCAGATCATAAAATAAGTAGTA----------TATACACGATGGCCATAAAGTTCGTGTGCAATTTAGT
i otoGar3.GL873742         C 0 I 455
s dasNov3.JH570741           484740 494 +   1532071 tgtccaacaatatttatttatcacctactataagccagatattt-----ttctaggccctaaagataaagagatg-ataggatacacaaaTCAGAAAATAATAACTTTTGATAAGTGCTATGGAAGGAAAACCA--CAGT---GCTGTCAAGAGCTGCT------AGAATTGGTGGGGAAACATATGGAGATATAGATGAGTTGAGGAACTGCC-------------TCACACCCATTCCAGGTAGACCCACCCAACTTAAGAAGGAAGAGAAAACA---CTAGCTGGCCTTATGAGCAAAGACTGCATAGACTAAGCAGATTTTGA----GACTCTAAAGAATGGATATAATTTGGGTCAAATAATCATGGGGATACAAATTCC-AATTAAGGGAATGTCCATAGTGATGAGATGGAGTCAGGAAAAA-CAAGCCCTACATGGA-AAGAACTATTCAAGGTTTCTA-ATAAGATCAGGTTACAAGATAGGTAGTAATTAGAATATTGAACACAGTGATTACAATTAA--------AAAGAAT
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     375084 2668 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=327671.000000
s hg38.chr6_GL000254v2_alt   619689 83 +   4827813 TAAATGAAGAGTGTGCCAGTAAGCCAGTAGAG---TTTATTAAAACAAAAACAGTATAGGAGACTGTACATAACACCATGTTAAGA
s panTro5.chr6             29591741 83 + 175400573 TAAATGAAGAGTGTGCCAGTAAGCCAGTAGAG---TTTATTAAAACAAAAACAGTATAGGAGACTGTACATAACACCATGTTAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29829972 83 + 173848474 TAAATGAAGAGTGTGCCAGTAAGCCAGTAGAG---TTTATTAAAACAAAAACAGTATAGGAGACTGTACATAACACCATGTTAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5632781 83 +   6154872 TAAATGACGAGTGTGCCAGTAAGCCAGTAGAG---TTTATTAAAACAAAAACAGTATAGGAGACTGTACATAACACCATGTTAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29860856 83 + 172585720 TAAATGAAGAGTATGCCAGTAAGTCAGTGGAG---TTTATTAAAAGAAAAACAGTGCAAGAGACTGTACATAACACCATGTTAGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29523829 83 - 170955103 TAAATGAAGAGTATGCCAGTAAGTCAGTGGAG---TTTATTAAAAGAAAAACAGTGCAAGAGACTGTACATAACACCATGTTAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2510631 81 -   2996164 TAAATAAAGAGTATGCCAGTAAGTCAATGGAG---TTTATTAAAAGAAAAACAGTGCAGGAGAC--TACATAACACCATGTTAGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     256406 83 +    766320 TAAATGAAGAGTATGCCAGTAAGTCAGTGGAG---TTTATTAAAAGAAAAACAGTGCAAGAGACTGTACATAACACCATGTTAGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28765156 83 -  71996105 TAAATGAAGAGTATGCCAGTAAGTCAGTGGAG---TTTATTAAAAGAAAAACAGTGCAGGAGACTGTACATAACACCATGTTAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     240569 83 -    352859 TAAATGAAGAGTATGCCAGTAAGTCAGTGGAG---TTTATTAAAAGAAAAACAGTGCAAGAGACTGTACATAACACCATGTTAGGA
i manLeu1.NW_012099655v1   C 0 C 0
s dasNov3.JH570741           485234 73 +   1532071 TAGATGGGTAGTGTGTTA-----CTAGTGGAGGTATCTTTTAAATCATG--------AGGAGATGGAACACTGCACCATTTTAAGA
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     375084 2668 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2009121 455 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=175195.000000
s hg38.chr6_GL000254v2_alt   619772 36 +   4827813 AAGTTAACTCAGAAATGATGTGCAGGGTACATTAAA
s panTro5.chr6             29591824 36 + 175400573 AAGTTAACTCAGAAATGATGTGCAGGGTACATTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29830055 36 + 173848474 AAGTTAACTCAGAAATGATGTGCAGGGTACATTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5632864 36 +   6154872 AAGTTAACTCAGAAATGATGTGCAGGGTACATTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29860939 36 + 172585720 AAGTTAACTCAGAAATGATGTGCAGGGTACATTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29523912 36 - 170955103 AAGTTAACTCAGAAATGATGTGCAGGGTACATTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2510712 36 -   2996164 AAGTTAACTCAGAAATGATGTGCGGAGTACATTAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     256489 36 +    766320 AAGTTAACTCAGAAATGATGTGCAGGATACATTAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28765239 36 -  71996105 AAGTTAACTCGGAAATGATGTGCAGAGTACATTAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     240652 36 -    352859 AAGTTAACTCAGAAATGATGTGCAGAGTACATTAAA
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     377752 36 +    730504 AAGTTAATTCAAAAGTGATGTGCAGGGTACATTAAA
i proCoq1.NW_012152574v1   I 2668 I 484
s dasNov3.JH570741           485307 14 +   1532071 AAGTTAACTCAAAG----------------------
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2009121 455 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=1530872.000000
s hg38.chr6_GL000254v2_alt   619808 376 +   4827813 CAGAATAGGAATGGAGACAAGGCACT-CCACTAGAACACTATGACAACATTACACAAAAGAGGGGCTGGGAAGTCAAGACTTAATCAAGGGAGGCATCAGTAGGTATGGGAAGAAAAAGAAGACGGTCCTGAGAGAATAGTGAA----GAAAGACACTAGACAACTTGTATCTACCTGATCTATAAGCCTTTTTCTATCT--------CTCTTTCAATC---------TCTTAGGCTCTTACATTGTATGTTATTTATTTTCCCTTCTTGGTATCTCTAAGTCTCT----TTATCTTTTAAATTTTCTCTCCAGTGTCTGTATT-TATTTCTCTCTTCCA----------CCACTTAGTCTTCCTTCCCATTTGTCTTGACTTCATAACTGTACTTTACATGGTAATAACACA
s panTro5.chr6             29591860 376 + 175400573 CAGGATAGGAATGGAGACAAGGCACT-CCACTAGAACACTATGACAACATTACACAAAAGAGGGGCTGGGAAGTCAAGACTTAATCAAGGGAGGCATCAGTAGGTATGGGAAGAAAAAGAAGACGATCCTGAGAGAACAGTGAA----GAAGGACGCTAGACAACTTGTATCTACCTGATCTATAAGCCTTTTTCTATCT--------CTCTTTCAATC---------TCTTAGGCTCTTACATTGTATGTTATTTATTTTTCCTTCTTGGTATCTCTAAGTCTCT----TTATCTTTTAAATTTTCTCTCCAGTGTCTGTATT-TATTTCTCTCTTCCA----------CCACTTAGTCTTCCTTCCCATTTGTCTTGACTTCATAACTGTACTTTACATGGTAATAACACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29830091 376 + 173848474 CAGGATAGGAATGGAGACAAGGCACT-CCACTAGAACACTATGACAACATTACACAAAAGAGGGGCTGGGAAGTCAAGACTTAATCAAGGGAGGCATCAGTAGGTATGGGAAGAAAAAGAAGACGATCCTGAGAGAACAGTGAA----GAAGGACGCTAGACAACTTGTATCTACCTGATCTATAAGCCTTTTTCTATCT--------CTCTTTCAATC---------TCTTAGGCTCTTACATTGTATGTTATTTATTTTCCCTTCTTGGTATCTCTAAGTCTCT----TTATCTTTTAAATTTTCTCTCCAGTGTCTGTATT-TATTTCTCTCTTCCA----------CCACTTAGTCTTCCTTCCCATTTGTCTTGACTTCATAACTGTACTTTACATGGTAATAACACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5632900 377 +   6154872 CAGGATAGGAATGGAGACAAGGCACTCCCACTAGAACACTATGACAACATTACACAAAAGAGGGGCTGGGAAGTCAAGACTTAATCAAGGGAGGCATCAGTAGGTATGGGAAGAAAAAGAAGACGGTCCTGAGAGAATAGTGAA----GAAAGACGCTAGACAACTTGTATCTACCTGATCTATAAGCCTTTTTCTATCT--------CTCTTTCAATC---------TCTTAGGCTCTTACATTGTATGTTATTTATTTTCCCTTCTTGGTATCTCTAAGTCTCT----TTATCTTTTAAATTTTCTCTCCAGTGTCTGTATT-TATTTCTCTCTTCCA----------CCACTTAGTCTTCCTTCCCATTTGTCTTGACTTCATAACTGTACTTTACATGGTAATAACACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29860975 386 + 172585720 CAGGATAGGAATGGAGACAATGCACT-CCACTAGAACACTATGACAACATTACACAAAAGAGGGGCTGGGAAGTCAAGACTTAATCAAGGAAGGCATCAGTAGGTAT-GGAAGAAAAAGAAGGTGGTCCTGAGAGAATAGTGAA----GAAGGACACTAGAGAACTTGTTTCTGCCTGATCTATAAGCCTTTTTCTATCT--------CTCTTTCAATC---------TCGTAGGCTCTTACATTGTATGTTATTTATTTTCCCTTCTTGGTATCTGTGAGTCTCT----TTATCTTTTAAATTTTCTCTCTTCCTTCCTTCTTCTATTTCTTCCTTCTATTTCTTCTCTTCACTTAGTCTTCCTTCCCATTTATCTTGACTTCATAAGTGTCCTTTACATAGTAATAACACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29523948 386 - 170955103 CAGGATAGGAATGGAGACAATGCACT-CCACTAGAACACTATGACAACATTACACAAAAGAGGGGCTGGGAAGTCAAGACTTAATCAAGGAAGGCATCAGTAGGTAT-GGAAGAAAAAGAAGGTGGTCCTGAGAGAATAGTGAA----GAAGGACACTAGAGAACTTGTTTCTGCCTGATCTATAAGCCTTTTTCTATCT--------CTCTTTCAATC---------TCATAGGCTCTTACATTGTATGTTATTTATTTTCCCTTCTTGGTATCTGTGAGTCTCT----TTATCTTTTAAATTTTCTCTCTTCCTTCCTTCTTCTATTTCTTCCTTCTATTTCTTCTCTTCACTTAGTCTTCCTTCCCATTTATCTTGACTTCATAAGTGTCCTTTACATAGTAATAACACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2510748 390 -   2996164 CAGGATAGGAATGGAGACAAGGCACT-CCACTAGAACACTATGACAACATTACACAAAAGAGGGGCTGGGAAGTCAAGACTTAATCAAGGGAGGCATCAGTAGGTAT-GGAAGAAAAAGAAGGTGGTCCTGAGAGAATAGTGAAGAAGGAAGGACACTAGAGAACTTGTTTCTGCCTGATCTATAAGCCTTTTTCTCTCT--------CTCTTTCAATC---------TCATAGGCTCTTACATTGTATGTTATTTATTTTCCCTTCTTGGTATCTGTAAGTCTCT----TTATCTTTTAAATtttctctcttccttccttattctatttcttccttctatttcttctcttCACTTAGTCTTCCTTCACATTTATCTTGACTTCATAACTGTCCTTTACATGGTAATAACACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     256525 386 +    766320 CAGGATAGGAATGGAGATAAGGCACT-CCACTAGAACACTATGACAACATTACACAAAAGAGGGGCTGGGAAGTCAAGACTTAATCAAGGGAGGCATCAGTAGGTAT-GGAAGAAAAAGAAGGTGGTCCTGAGAGAATAGTGAA----GAAGGACACTAGAGAACTTGTTTCTGCCTGATCTATAAGCCTTTTTCTATCT--------CTCTGTCAATC---------TCGTAGGCTCTTACATTGTATGTTATTTATTTTCCCTTCTTGGTATCTGTGAGTCTCT----TTATCTTTTAAATTTTCTCTCTTCCTTCCTTCTTCTATTTCTTCCTTCTATTTCTTCTCTTCACTTAGTCTTCCTTCCCATTTATCTTGACTTCAGAAGTGTCCTTTACATAGTAATTACACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28765275 390 -  71996105 CAGGATAGGAATGGAGACAAGGCACT-CCACTAGAACACTATGACAACATTACACAAAAGAGGGGCTGGGAAGTCAAGACTTAATCAAGGGAGGCATCAGTAGGTAT-GGAAGAAAAAGAAGGTGGTCCTGAGAGAATAGTGAAGAAGGAAGGACACTAGAGAACTTGTTTCTGCCTGATCTATAAGCCTTTTTCTATCT--------ATCTTTCAATC---------TCATAGGCTCTTACATTGTATGTTATTTATTTTCCCTTCTTAGTATCTGTAAGTCTCT----TTATCTTTTAAATTTTCTCTCTTCCTTCCTTCTTCTATTTCTTCCTTCTATTTCTTCTCTTCACTTAGTCTTCCTTCACATTTATCTTGACTTCATAACTGTCCTTTACATGGTAATAACACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     240688 386 -    352859 CAGGATAGGAATGGAGATAAGGCACT-CCACTAGAACACTATGACAACATTACACAAAAGAGGGGCTGGGAAGTCAAGACTTAATCAAGGGAGGCATCAGTAGGTAT-GGAAGAAAAAGAAGGTGGTCCTGAGAGAATAGTGAA----GAAGGACACTAGAGAACTTGTTTCTGCCTGATCTATAAGCCTTTTTCTATCT--------CTCTTTCAATC---------TCGTAGGCTCTTACATTGTATGTTATTTATTTTCCCTTCTTGGTATCTGTGAGTCTCT----TTATCTTTTAAATTTTCTCTCTTCCTTCCTTCTTCTATTTCTTCCTTCTATTTCTTCTCTTCACTTAGTCTTCCTTCCCATTTATCTTGACTTCAGAAGTGTCCTTTACATAGTAATTACACA
i manLeu1.NW_012099655v1   C 0 C 0
s dasNov3.JH570741           485321 377 +   1532071 CAGGACTGGAGTGGAAACAGGGAGCT-CCACTAGGAGATGATGGAAACA--GCACAAAAATGGG---AAAAAATAAAGAC--AAGCTAGGGATACTTTAGTAGG-ATGGAAAGGCAAGTAAGATGGTCCTGGAAGAGATGGGAA----GGAAGATGCTGGATGGCCTGTTTCCTCCC-ATCTGTAAACCTCTTTCCTTCTTTTTCTACCTCTTACATTCTTACATTCATCTTACATTCTTATACTATGGGTTGTGTAtttacttttctttacatatctaagtctctttccttatttttctaattttctcttttctttcttctctttctttgtcccttctA----------ATACTTTGACTTCTTACC------------CTTCATGGCTTTCCCTTACAAGGTTATAACAAA
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     377788 484 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2009121 455 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=464031.000000
s hg38.chr6_GL000254v2_alt   620184 111 +   4827813 TAGAAAATAGTAATTAAGtacttttacttttaacattagtaatttctac-tttttttt-ctaaatttaGTCATTATATAACTAAGACTTTTTATTCCCCATC------AAAAAACCCTT
s panTro5.chr6             29592236 111 + 175400573 TAGAAAATAGTAATTAAGtacttttacttttaacattagtaatttctac-tttttttt-ctaaatttaGTCATTATATAACTAAGACTTTTTATTCCCCATC------AAAAAACCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29830467 111 + 173848474 TAGAAAATAGTAATTAAGtacttttacttttaacattagtaatttctac-tttttttt-ctaaatttaGTCATTATATAACTAAGACTTTTTATTCCCCATC------AAAAAACCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5633277 112 +   6154872 TAGAAAATAGTAATTAAGtacttttacttttaacattagtaatttctacttttttttt-ctaaatttaGTCATTATATAACTAAGACTTTTTATTCCCCATC------AAAAAACCCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29861361 111 + 172585720 TAGAAAATAGTAATTTCGTATTTTTACTTTTAACACTAGTAATTTCTAC-TTTTTTTC--TAACTTTAGGCATTATATAACTAAGACTTTTTATTCCCCATC-----AAAAAAACCCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29524334 111 - 170955103 TAGAAAATAGTAATTTCGTATTTTTACTTTTAACACTAGTAATTTCTAC-TTTTTTTC--TAACTTTAGGCATTATATAACTAAGACTTTTTATTCCCCATC-----AAAAAAACCCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2511138 110 -   2996164 GAGAAAATAGTAATTTAGTACTTTTACTTTTAACACTAGTAATTTCTAC-TTTTTTTC--TAACTTTAGTCATTATATAACTAAGACTTTTTATTCCCTGTC------AAAAAATCCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     256911 113 +    766320 TAGAAAATAGTAATTTCGTATTTTTACTTTTAACACTAGTAATTTCTAC-TTTTTTTTTATAACTTTAGTCATTATATAACTAAGACTTTTTATTCCCCATC-----AAAAAAACCTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28765665 110 -  71996105 CAGAAAATAGTAATTTAGTACTTTTACTTTTAACACTAGTAATTTCTAC-TTTTTTTC--TAACTTTAGTCATTATATAACTAAGACTTTTTATTCCCTGTC------AAAAAATCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     241074 112 -    352859 TAGAAAATAGTAATTTCGTATTTTTACTTTTAACACTAGTAATTTCTAC-TTTTTTTT-ATAACTTTAGTCATTATATAACTAAGACTTTTTATTCCCCATC-----AAAAAAACCCTT
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2009576 107 -   2232465 TAGGAAGCAGTAATTTCACACTTTTATTTTCAACATATAT-ATTCCTAC-CTCCTTTA-CTAAATGTAATTACTCTATAACCAAGAAAGTTTATTCTCCCCC--------AAAACCTT-
i otoGar3.GL873742         I 455 C 0
s dasNov3.JH570741           485698 104 +   1532071 TTAAAGGCAGTAATTTAATACTTTTCTTTTTAACATATGTAATTTCTAC-TCCTTTTT-CTAAATTT------------ACTGAGAATTTGTTTTCCCCTTTTTTAAAAAAAAAAACT-
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     377788 484 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=1411256.000000
s hg38.chr6_GL000254v2_alt   620295 279 +   4827813 GTTT-TTTCTGTATG-TTTTATCTGATTCTGTTTTCTAAATTTTTAGCGAAAAAAGTTTCCCAAATTTAAGATACTCTATAAAATAGTAATATGTTTTGGGGACTTAGTTTTAGAA--AAATCCC-TCAGGAAATTCTGCCTTTTGAATAGAATAAAGAATGCATGTCAAATGGGATTGA-AAATTATGACTGTCTTCATTCCAATGTGAAGATAAATTGGCCTTGGCCCATGCAGC-AGGTGATA--AAATTAAAATTAGCTACCAACAGATCTGGAGGTAAAACAT
s panTro5.chr6             29592347 279 + 175400573 ATTT-TTTCTGTATG-TTTTATCTGATTCTGTTTTCTAAATTTTTAGCGAAAAAAGTTTCCCAAATTTAAGATACTCTATAAAATAGTAATATGTTTTGGGGACTTAGTTTTAGAA--AAATCCC-TCAGGAAATTCTGCCTTTTGAATAGAATAAAGAATGCATGTCAAATGGGATTGA-AAATTATGACTGTCTTCATTCCAATGTGAAGATAAATTGGCCTTGGCCCATGCAGC-AGGTGATA--AAATTAAAATTAGCTACCAATAGATCTGGAGGTAAAACAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29830578 279 + 173848474 ATTT-TTTCTGTATG-TTTTATCTGATTCTGTTTTCTAAATTTTTAGCGAAAAAAGTTTCCCAAATTTAAGATACTCTATAAAATAGTAATATGTTTTGGGGACTTAGTTTTAGAA--AAATCTC-TCAGGAAATTCTGCCTTTTGAATAGAATAAAGAATGCATGTCAAATGGGATTGA-AAATTATGACTGTCTTCATTCCAATGTGAAGATAAATTGGCCTTGGCCCATGCAGC-AGGTGATA--AAATTAAAATTAGCTACCAACAGATCTGGAGGTAAAACAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5633389 278 +   6154872 G-TT-TTTCTGTATG-TTTTATCTGATTCCGTTTTCTAAATTTTTAGTGAAAAAAGTTTCCCAAATTTAAGATACTCTATAAAATAGTAATATGTTTTGGGGACTTAGTTTTAGAA--AAATCCC-TCAAGAAATTCTGCCTTTTGAATAGAATAAAGAATGCATGTCAAATGGGATTGA-AAATTATGACTGTCTTCATTCCAATGTGAAGATAAATTGGCCTTGGCCCATGCAGC-AGGTGATA--AAATTAAAATTAGCTACCAACAGATCTGGAGGTAAAACAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29861472 277 + 172585720 GTTTCTTTCTGCATA-TTTTATCTGATTCTGTTTTCTAAATTGTTAGGGAAAAAA-TTTCCTAAATTTAAGATACTCTATAAAATAGTA--ATGTTTTGGGGACTTAGTTTTAGAA--AAATCCC-TCAGGACATTCTGCCTTTTGAATAGAATAAAGAATGTATGTCAACTGGGATTGA-AAATTATGACTGTCTTCATTCCAACATGAAGACAAATTGGGCTTGGCCCATGCAGC-AGGTGATG--AAATTAAAATGAGCTACCAACAGATCTAGAGGTAACACAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29524445 277 - 170955103 GTTTCTTTCTGCATA-TTTTATCTGATTCTGTTTTCTAAATTGTTAGGGAAAAAA-TTTCCTAAATTTAAGATACTCTATAAAATAGTA--ATGTTTTGGGGACTTAGTTTTAGAA--AAATCCC-TCAGGACATTCTGCCTTTTGAATAGAATAAAGAATGTATGTCAACTGGGATTGA-AAATTATGACTGTCTTCATTCCAACATGAAGACAAATTGGGCTTGGCCCATGCAGC-AGGTGATG--AAATTAAAATGAGCTACCAACAGATCTAGAGGTAACACAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2511248 279 -   2996164 GTTTCTTTCTGCATA-TTTTATCTGATTCTGTTTTCTAAATTTTTAGGGAAAAAA-ATTCCTAAATTTAAGATACTCTATAAAATagtaatatgttttggggacttagttttagaa--aaatccc-tctggacattctgccttttgaatagaataaagAATGTATGTCAACTGGGATTGA-AAATTATGACTGTCTTCATTCCAACGTGAAGATAAATTGGCCTTGGCCCATGCAGC-AGGTGATG--AAATTAAAAATTGCTACTAACAGACCTGGAGGTAAAACAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     257024 277 +    766320 GTTTCTTTCTGCATA-TTTTATCTGATTCTGTTTTCTAAATTGTTAGGGAAAAAA-TTTCCTAAATTTAAGATACTCTATAAAATAGTA--ATGTTTTGGGGACTTAGTTTTAGAA--AAATCCC-TCAAGACATTCTGCCTTTTGAATAGAATAAAGAATGTATGTCAACTGGGATTGA-AAATTATGACTGTCTTCATTCCAACATGAAGACAAATTGGCCTTGGCCCGTGCAGC-AGGTGATG--AAATTAAAATTAGCTACCGACAGATCTAGAGGTAAAACAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28765775 279 -  71996105 GTTTCTTTGTGCATA-TTTTATCTGATTCTGTTTTCTAAATTTTTAGGGAAAAAA-ATTCCTAAATTTAAGATACTCTATAAAATAGTAATATGTTTTGGGGACTTAGTTTTAGAA--AAATCCC-TCTAGACATTCTGCCTTTTGAATAGAATAAAGAATGTATGTCAACTGGGATGGA-AAATTATGACTGTCTTCATTCCAACGTGAACATAAATTGGCCTTGGCCCATGCAGC-AGGTGATG--AAATTAAAAATTGCTACTAACAGATCTGGAGGTAAAACAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     241186 277 -    352859 GTTTCTTTCTGCATA-TTTTATCTGATTCTGTTTTCTAAATTGTTAGGGAAAAAA-TTTCCTAAATTTAAGATACTCTATAAAATAGTA--ATGTTTTGGGGACTTAGTTTTAGAA--AAATCCC-TCAGGACATTCTGCCTTTTGAATAGAATAAAGAATGTATGTCAACTGGGATTGA-AAATTATGACTGTCTTCATTCCAACATGAAGACAAATTGGCCTTGGCCCGTGCAGC-AGGTGATG--AAATTAAAATTAGCTACCGACAGATCTAGAGGTAAAACAT
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     378272 279 +    730504 GTTT-TTTTTGTATATTTTCATCTGATTCTGTTTTCCAAATTTTTAGAAAAATA--TTTCCTAAATTTAAGATACCCTATAAAATAACATTCTGTCATGTGGACTTATTCTTAGAA--AAATCCCTTTAGGATATTCCCCTGTGTGAACAGAGTAAGGAATACATATAAACTGGAATTGAGAAACTGTGACTGCCTTT-TTCTAACATGAAGATAAATTGGCTTTGGCCCATGCAAC-AGTTGATA--AAAGTAAAATTAATTGTTAACAGATCTAAAGGTAAAACAT
i proCoq1.NW_012152574v1   I 484 I 49
s otoGar3.GL873742          2009683 269 -   2232465 --TT-TTTTTGTATA-TTTCATCTAATTCTGTTTTTCAAGTTTTTAGAAAAAGA--TTTCCCAAATTTAAGATACCCTGTAACATAA----CTGTCATATGGATTTATTTTTAGAA--AAATCCCTTTAGGTTGTTACACTTTGGGGGCAGAGTAAGGAAGGTACATAAACTGGAACTGAGAAAGTGT------CTTT-GTTTAACATGGAAATAAACTGACTTTGGCTCATGCACCAAAGTGATGGTAAAGTAAAATTAATAGCCAACAGATCTAGAGGTAAAATAT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           485802 250 +   1532071 -----ATTCT-TATA-TTTTTCTCTATTTTGTTGTCTAAATTTTCATAAAAAT---TTTCCTAAATTTAAGAAAC-CTATAAAATAGTAACCTGTCATATGGaattatttttaaaaataattatt-ttaGGTTATTTCACTTCTTGGATAGAGTAAGGAATATA----AGCTGGAATTGATAAGCTATCGCTATCTTCTTTCCAACATGG-----AATTGGCACTGGCCTATGCAAC-----------AAGTTAA------TTGCCAACAGATTTGGAGATGAAACAT
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=86911.000000
s hg38.chr6_GL000254v2_alt   620574 22 +   4827813 CACTTTACTGTGTT---------------------TACATTTC---------
s panTro5.chr6             29592626 22 + 175400573 CACTTTACCGTGAT---------------------TACATTTC---------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29830857 22 + 173848474 CACTTTACCGTGAT---------------------TACATTTC---------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5633667 22 +   6154872 CAATTTACCGTGAT---------------------TACATTTC---------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29861749 22 + 172585720 CACTTCACCGTGAT---------------------TACATTTC---------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29524722 22 - 170955103 CACTTCACCGTGAT---------------------TACATTTC---------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2511527 22 -   2996164 CACTTCACCGTGAT---------------------TACATTTC---------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     257301 22 +    766320 CACTTCACCGTGAT---------------------TACATTTC---------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28766054 22 -  71996105 CACTTCACTGTGAT---------------------TACATTTC---------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     241463 22 -    352859 CACTTCACCGTGAT---------------------TACATTTC---------
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2009952 22 -   2232465 TGCTTCATCATGAC---------------------TACATTTA---------
i otoGar3.GL873742         C 0 I 22
s dasNov3.JH570741           486052 52 +   1532071 CACTTTATCCTGATACACATAAATCCATAAAAATCAGCATCTATGTGTGTAC
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     378551 49 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=208793.000000
s hg38.chr6_GL000254v2_alt   620596 33 +   4827813 TTAATCTATTGGTGATGATGTTTTATTAAGAAG
s panTro5.chr6             29592648 33 + 175400573 TTAATCTATTGGTGATGATGTTTTATTAAGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29830879 33 + 173848474 TTAATCTATTGGTGATGATGTTTTATTAAGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5633689 33 +   6154872 TTAATCTATTGGTGATGATGTTTTATTAAGAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29861771 33 + 172585720 TTAATCTCTTGGTGATGATGTTTGATTAAGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29524744 33 - 170955103 TTAATCTCTTGGTGATGATGTTTGATTAAGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2511549 33 -   2996164 TTAATCTATTGGTGATGATGTTTGATTAAGAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     257323 33 +    766320 TTAATCTATTGGTGATGATGTTTGATTAAGAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28766076 33 -  71996105 TTAATCTATTGGTGATGATGTTTGATTAAGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     241485 33 -    352859 TTAATCTATTGGTGATGATGTTTGATTAAGAAG
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     378600 33 +    730504 TTAATCTATTGGTCATGATGTTTTATTAAGAAG
i proCoq1.NW_012152574v1   I 49 I 143
s otoGar3.GL873742          2009996 33 -   2232465 TCAATCTATTGGTGATGCTGTTTTATTAAAAAG
i otoGar3.GL873742         I 22 C 0
s dasNov3.JH570741           486104 33 +   1532071 TTAACCTATTGGTGACAGTGCTTTATTATGAAG
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=29183.000000
s hg38.chr6_GL000254v2_alt   620629 6 +   4827813 GGCCTA
s panTro5.chr6             29592681 6 + 175400573 GACCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29830912 6 + 173848474 GACCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5633722 6 +   6154872 GGCCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29861804 6 + 172585720 GGCCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29524777 6 - 170955103 GGCCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2511582 6 -   2996164 GGCCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     257356 6 +    766320 GGCCTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28766109 6 -  71996105 GGCCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     241518 6 -    352859 GGCCTA
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2010029 6 -   2232465 AACCAA
i otoGar3.GL873742         C 0 I 116
s dasNov3.JH570741           486137 6 +   1532071 AACCTA
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     378633 143 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=134668.000000
s hg38.chr6_GL000254v2_alt   620635 34 +   4827813 CT----AAAGAAAGAAAGGT--------------------------------------------CAAAAGCATGGCTTAAGT
s panTro5.chr6             29592687 34 + 175400573 CT----AAAGAAAGAAAGGT--------------------------------------------CAAAAGCATGGCTTAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29830918 34 + 173848474 CT----AAAGAAAGAAAGGT--------------------------------------------CAAAAGCATGGCTTAAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5633728 34 +   6154872 CT----AAAGAAAGAAAGGT--------------------------------------------CAAAAGCATGGCTTAAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29861810 34 + 172585720 CT----AAAGAAAGAAAGGT--------------------------------------------CAAAAGCATGGCGTAAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29524783 34 - 170955103 CT----AAAGAAAGAAAGGT--------------------------------------------CAAAAGCATGGCGTAAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2511588 38 -   2996164 CTAAAGAAAGAAAGAAAGGT--------------------------------------------CAAAAGCATGTCTTAAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     257362 34 +    766320 CT----AAAGAAAGAAAGGT--------------------------------------------CAAAAGCATGGCTTAAGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28766115 38 -  71996105 CTAAAGAAAGAAAGAAAGGT--------------------------------------------CAAAAGCATGTCTTAAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     241524 34 -    352859 CT----AAAGAAAGAAAGGT--------------------------------------------CAAAAGCATGGCTTAAGT
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2010151 78 -   2232465 ct----aaaaatagccaagtattatggcaggcacctgtagtcccagttacttgggaggctgagacaagagaattgcttgagc
i otoGar3.GL873742         I 116 I 106
s dasNov3.JH570741           486143 30 +   1532071 --------ATAAGGAAATGT--------------------------------------------CAAAAGCATTACTTAGTT
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     378633 143 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=540644.000000
s hg38.chr6_GL000254v2_alt   620669 116 +   4827813 AGTAAGAA----------CAGAAAAATATGACACA--CAT--ATGAGGAATGTGAAGAAAAATATTTCACATTAT--TTAATATACAGAAAGCAATATGAAAAAGCAGGGAAATTTTC-AAGTGATGAAGTCC
s panTro5.chr6             29592721 116 + 175400573 AGTAAGAA----------CAGAAAAATATGACACA--CAT--ATGAGGAATGTGAAGAAAAATATTTCACATTAT--TTAATATACAGAAAGCAATATGAAAAAGCAGGGAAATTTTC-AAGTGATGAAGTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29830952 116 + 173848474 AGTAAGAA----------CAGAAAAATATGACACA--CAT--ATGAGGAATGTGAAGAAAAATATTTCACATTAT--TTAATATACAGAAAGCAATATGAAAAAGCAGGGAAATTTTC-AAGTGATGAAGTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5633762 116 +   6154872 AGTAAGAA----------CAGAAAAATATGACACA--CAT--ATGAGGAATGTGAAGAAAAATATTTCACATTAT--TTAATATACAGAAAGCAATATGAAAAAGCAGGGAAATTTTC-TAGTGATAAAGTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29861844 116 + 172585720 AGTAAGAA----------CAGAAAAATATGACATA--CAT--ATGAGGAATGTGAAGAAAAATATTTTACATTAT--TTAATATACAGAAAGCAATATGAAAAAGGAGGGAAATTTTC-AAGTGATGAAGTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29524817 116 - 170955103 AGTAAGAA----------CAGAAAAATATGACATA--CAT--ATGAGGAATGTGAAGAAAAATATTTTACATTAT--TTAATATACAGAAAGCAATATGAAAAAGGAGGGAAATTTTC-AAGTGATGAAGTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2511626 116 -   2996164 AGTAAGAA----------CAGAAAAATATGACAAA--CAT--ATGAGGAATGTGAAGAAAAATATTTTACATTAT--TTAATATACAGAAAGCAATATGAAAAAGGAGGGAAATTTTC-AAGTGATGAAGTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     257396 116 +    766320 AGTAAGAA----------CAGAAAAATATGACATA--CAT--ATGAGGAATGTGAAGAAAAATATTTTACATTAT--TTAATATACAGAAAGCAATATGAAAAAGGAGGGAAATTTTC-AAGTGATGAAGTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28766153 116 -  71996105 AGTAAGAA----------CAGAAAAATATGACAAA--CAT--ATGAGGAATGTGAAGAAAAATATTTTACATTAT--TTAATATACAGAAAGCAATATGAAAAAAGAGGGAAATTTTC-AAGTGATGAAGTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     241558 116 -    352859 AGTAAGAA----------CAGAAAAATATGACATA--CAT--ATGAGGAATGTGAAGAAAAATATTTTACATTAT--TTAATATACAGAAAGCAATATGAAAAAGGAGGGAAATTTTC-AAGTGATGAAGTCC
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2010335 129 -   2232465 AGAAAGAAAAGCCAGAAGCATGAAAATATAGTAAATTCAT--ATGAGGAACATGAATAAAAATCTTTCACATGCT--TTAACAGATAGTAAGTAATATGAAGAAGGAGAAAAAAACACAAAGCAATGAAGTGC
i otoGar3.GL873742         I 106 C 0
s dasNov3.JH570741           486173 117 +   1532071 AGAGAGAA----------TAGAGGAGAATGATGAA--CATAAATGAGAAACATGAGGAGAAAACCTTTCAGTTGTCCTCAACAAACAAAGAAGAATATG---AAGGAATCAAAGTATC-AATATTTGAAGCCC
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     378633 143 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=398185.000000
s hg38.chr6_GL000254v2_alt   620785 78 +   4827813 ATTAAACAAATATCTCATGAAAGAGGGAAACAGT-CTTTGAATGCAAAATTCAGGAATGG-AAAAATAAATAAGAAGATA
s panTro5.chr6             29592837 78 + 175400573 ATTAAACAAATATCTCATGAAAGAGGGAAACAGT-CTTTGAATGCAAGATTCAGGAATGG-AAAAATAAATAAGAAGATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29831068 78 + 173848474 ATTAAACAAATATTTCATGAAAGAGGGAAACAGT-CTTTGAATGCAAGATTCAGGAATGG-AAAAATAAATAAGAAAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5633878 78 +   6154872 ATTAAACAAATATCTCATGAAAGCGGGAAACAGT-CTTTGAATGAAAGATTCAGGAATGG-AAAAATAAATAAGAAGATA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29861960 78 + 172585720 ATTAAACAAATATCTCATGAAAGAGGGGCACTAT-CTTTGAAAGCGAGATTCAGGAATGG-AAAAATAAATAAAAAGATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29524933 78 - 170955103 ACTAAACAAATATCTCATGAAAGAGGGGCACTAT-CTTTGAAAGCGAGATTCAGGAATGG-AAAAATAAATAAAAAGATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2511742 78 -   2996164 ACTAAACAAATATCTCATGAAAGAGGGGCACTAT-CTTTGAATGCGAGATTCAGGAATGG-AAAAATAAATAAAAAGATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     257512 78 +    766320 ATTAAACAAATATCTCATGAAAGAGGGGCACTAT-CTTTGAATGCAAGATTCAGGAATGG-AAAAATAAATAAAAAGATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28766269 75 -  71996105 ACTAAACAAATATCTCATGAAAGAGGGGCACTAT-CTTTGAATGCAAGATTCAGGAATGG-AAAAATAAATAAAAAG---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     241674 78 -    352859 ATTAAACAAATATCTCATGAAAGAGGGGCACTAT-CTTTGAATGCAAGATTCAGGAATGG-AAAAATAAATAAAAAGATA
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     378776 79 +    730504 ATTAAACAAATATTGCATGAAAGAGGGGCACTGT-CTTTGAATGAAGGATTCAGGAATGGAAAAAATAAATAAGATGATA
i proCoq1.NW_012152574v1   I 143 I 255
s otoGar3.GL873742          2010464 72 -   2232465 ATCAAACAA----TGCATGCAA-AGAAGAACTAT-CTTTGAATGGAGGATTCAGAAATGGAAAAAACAAAAAAG--GATA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           486290 79 +   1532071 ATCAAACACATATAGCTTGAAACGGAGGCAGCATAATTTGGATGGAAGATACAGGAGTGG-AAAATAAAATGAGAATGTT
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=948825.000000
s hg38.chr6_GL000254v2_alt   620863 222 +   4827813 ATATCTAAAGAGAGCAACA-TTGATATCTCTCATAGAACTAACTAAAGCTCAAGAATAAGTACACTTAGACTGG-AGTGTATCAACTCTTCAATATCTGT--CCCAACATTGCAATT---ATCTTTTAAACTT----------------------------------------------TCAATAAAAACAGCTGACTGGTGAAAAAGTTAATTTTGTAGTATAAGATTATTGAACCTGTGAGGTTCAATAAGTGAGTTTACTATCCAAAGAGGA
s panTro5.chr6             29592915 222 + 175400573 ATATCTAAAGAGAGCAACA-TTGATATCTCTCATAGAACTAACTAAAGCTCAAGAATAAGTACACTTAGACTGG-AGTGTATCAACTCTTCAATATCTGT--CCCAACATTGGAATT---ATCTTTTAAACTT----------------------------------------------TCAATAAAAACAGCTGACTGGTGAAAAAGTTAATTTTGTAGTATAAGATTATTGAACCTGTGAGGTTCAATAAGTGAGTTTACTATCCAAAGAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29831146 222 + 173848474 ATATCTAAAGAGAGCAACA-TTGATATCTCTCATAGAACTAACTAAAGCTCAAGAATAAGTACACTTAGACTGG-AGTGTATCAACTCTTCAATATCTGT--CCCAACATTGGAATT---ATCTTTTAAACTT----------------------------------------------TCAATAAAAACAGCTGACTGGTGAAAAAGTTAATTTTGTAGTATAAGATTATTGAACCTGTGAGGTTCAATAAGTGAGTTTACTATCCAAAGAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5633956 222 +   6154872 ATATCTAAAGAGAGCAACA-TTGATATCTCTCATAGAACTAACTAAAGCTCAAGAATAAGTACACTTAGACTGG-AGTGTATCAACTCTTCAATATCTGT--CCCAACATTGCAATT---ATCTTTTAAACTT----------------------------------------------TCAAAAAAAACAGCTGACAGGTGAAAAAGTTAATTTTGTAGTATAGGATTATTGAACCTGTGAGGTTCAATAAGTGAGTTTACTATCCAAAGAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29862038 222 + 172585720 ATATCTAAAGAGAGCAACA-TTGATATCTCTCATAGAACTAAGTAAAGCTCAGGAATAAGTACACTTAGACTGA-AGTGTGCCAACTCTTCAATATCTAT--CCCAACATTGCAATT---ATCTTTTAAACTT----------------------------------------------TCACTAAAAACAGCTGACTGACAAAAAAGTCAATTTTGTAGTCTAAGATTATTGAACCTGTGAGGTTCAATAAGTGAGTTTACTATCTAAAGAGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29525011 222 - 170955103 ATATCTAAAGAGAGCAACA-TTGATATCGCTCATAGAACTAAGTAAAGCTCAGGAATAAGTACACTTAGACTGA-AGTGTGCCAACTCTTCAATATCTAT--CCCAACATTGCAATT---ATCTTTTAAACTT----------------------------------------------TCACTAAAAACAGCTGACTGACAAAAAAGTTAATTTTGTAGTATAAGATTATTGAACCTGTGAGGTTCAATAAGTGAGTTTACTATCTAAAGAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2511820 222 -   2996164 ATATTTAAAGAGAGCAACA-TTGATATCTCTCATAGAACTAAGTAAAGCTCAAGAATAAGTACACTTGGACTGA-AGTGTGCCAACTCTTCAATATCTGT--CCCAACATTGCAATT---ATCTTGTAAACTT----------------------------------------------TCACTAAAAACAGGTGACTGGCGAAAAAGTTAATTTTGTAGTACAAGATTATTGAACCTGTGAGGTTCAATAAGTGAGTTTACTATCCAAAGAGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     257590 223 +    766320 ATATCTAAAAAGAACAACATTTGATATCTCTCATAGAACTAAGTAAAGCTCAAGAATAAGTACACTTAGACTGA-AGTGTGCCAACTCTTCAATATCTGT--CCCAACATTGCAATT---ATCTTTTAAACTT----------------------------------------------TCACTAAAAACAGCTGACTGACAAAAAAGTTAATTTTGTAGTATAAGATTATTGAACCTGTGAGGTTCAATAAGTGAGTTTACTATCTAAAGAGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28766344 222 -  71996105 ATGTTTAAAGAGAGCAACA-TTGATATCTCTCATAGAACTAAGTAAAGCTCAAGAATAAGTACACTTAGACTGA-AGTGTGCCAACTCTTCAATATCTGT--CCCAACATTGCAATT---ATCTTGTAAACTT----------------------------------------------TCACTAAAAACAGGTGACTGGTGAAAAAGTTAATTTTGTAGTACAAGATTATTGAACCTGTGAGGTTCAATAAGTGAGTTTACTATCCAAAGAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     241752 224 -    352859 ATATCTAAAAAGAACAACATTTGATATCTCTCATAGAACTAAGTAAAGCTCAAGAATAAGTACACTTAGACTTAGAGTGTGCCAACTCTTCAATATCTGT--CCCAACATTGCAATT---ATCTTTTAAACTT----------------------------------------------TCACTAAAAACAGCTGACTGACAAAAAAGTTAATTTTGTAGTATAAGATTATTGAACCTGTGAGGTTCAATAAGTGAGTTTACTATCTAAAGAGGA
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2010536 259 -   2232465 ATACCTAAAACAAGTAGCA-GGGAGGTCTTTCACATAGAAATCAAAAGCTTAAGAATGTGTACACTTA---TTG-AGTATGCCAACTCTTCATTTTTTTTGAGCCAACATTGTAATTGGCATTTTTAAGATTTCAAAATATTAAGCACAATGAAATGCAGTCACTTATTAAATTGAGTGTCACTAGAAACAGCTG--TGGGGGAAAA-TTAATTTTCTAGTATGAAATTATGGACCATG--------GATAAGTAAGACTATAAATCAAATAATA
i otoGar3.GL873742         C 0 I 1
s dasNov3.JH570741           486369 205 +   1532071 AAATCTAACA--AGTCACA-TCTGTGTCTATCAC---------CACAGCTCTTGAGTATGTACACTGAGGAGTG-GATATAAGAACAGCTAAATATCTGT--CACAACAGTGCAATC---AGCTTCTAAAGTG------------------------------------------AGTGGCACTAGACACAGCCGACTGGTTAAAAAGTTTCTTTTCCAATATTAGATTATTG----------GTCACAGACGAAGGAAAGTTATCAAAAGAGGG
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     378855 255 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=6651408.000000
s hg38.chr6_GL000254v2_alt   621085 1072 +   4827813 -AATTGGTGGCTGCCACTTGCTCCCTATAGTTTTGACAGCTTCTTTGATGTCCTTATTCCTCAATGTGTAAATTATAGGGTTTAGCAT-GGGGGTAACAACACTGTACAACACTGAAACCAACCTATCTTTCTTTAATGAGTAAGTTGAGATGGGCCGTACATATGTAAAGATGGCGCTGCCATAAAAGAGAAAGACAATGGCCAGGTGGGAGGCACATGTAGAAAAGGCTTTTCGTCTTCCCTCTGAGGACTGGATCCTCAAGATGGTGGAGATTATGCAAATGTAGGAAAGTACGATACAAAGGAAAGGAGTCCAACCAATGAAGACCCCAGTGGATAGCAGTGCCAACTCATTGACAGAAGTGTTTCCACAAGACAAGATCAGCAAAGGGGGGATGTCACAGAAGAAGTAATTAATCTGATTGTTGCCACAGAAGGGCAGGCAGAATGTCAACACTGTATGCACCACTGAGTTAAGGAAACCAGCAGCCCAGCATGAGGCTGCTAATTGATTGCATAGAACCTTGCTCAGAATAACTGAATACCTTAAAGGATTGCAGATTGCAATGTAACGATCATATGCCATTGCTGCCAGTAGGAGACACTCTGATCCTACAAAGAAAACAAATGCAAAAAGTTGAACCACACACCCCACAT-----AAGAAATGCTTTTTTTCTTTGAGAGGAGGTGCACCATCATCTGGGGGACATTGCTGGTGGTGTAGCAGATGTCAATAAAGGCCAAGTTCCCTAGAAAATAATACATAGGTGTATGCAGGTGTGGATCAGTCACAGTCGTCAAGATAATTAATATATTTCCTCCCAAAGTACAGAAATAAGTCAGAAAGAAGATGGTGAATAGTAAAAACTGCCATTCATTTAGGTTGGAGAATCCCAAGATGATGAATTCAGTTATAGCTGTTTGATTCTTTCTTTCCATGATGTCGCCTGGTTTCCTTTCAGGAATTGGGCAAAGAGAAGACCAGATTATAAAAATGAATCATATGCTGCAATAGCA-TGACCTGAAAAATAAGGG-AAAAAACGGTTACAAATAAAAGTAATCACCATTTATGTC-------A
s panTro5.chr6             29593137 1072 + 175400573 -AATTGGTGGCTGCCACTTGCTCCCTATAGTTTTGACAGCTTCTTTGATGTCCTTATTCCTCAATGTGTAAATTATAGGGTTTAGCAT-GGGGGTAACAACACTGTACAACACTGAAACCAACCTATCTTTCTTTAATGAGTAAGTTGAGATGGGCCGTACATATGTAAAGATGGCGCTGCCATAAAAGAGAAAGACAGTGGCCAGGTGGGAGGCACATGTAGAAAAGGCTTTTCGTCTTCCCTCTGAGGAGTGGATCCTCAAGATGGTGGAGATTATGCAAATGTAGGAAAGTATGATACAAAGGAAAGGAGTCCAACCAATGAAGACCCCAGTAGATAGCAGTGCCAACTCATTGACAGAAGTGTTTCCACAAGACAAGATCAGCAAAGGGGGGATGTCACAGAAGAAGTAATTAATCTGATTGTTGCCACAGAAGGGCAGGCGGAATGTCAACACTGTATGCACCACTGAGTTAAGGAAACCAGCAGCCCAGCATGAGGCTGCTAATTGATTGCATAGAACCTTGCTCAGAATAACTGAATACCTTAAAGGATTGCAGATTGCAATGTAACGATCATATGCCATTGCTGCCAGTAGGAGACACTCTGATCCTACAAAGAAAACAAATGCAAAAAGTTGAACCACACACCCTACAT-----AAGAAATGCTTTTTTTCTTTGAGAGGAGGTGCACCATCATCTGGGGGACATTGCTGGTGGCGTAGCAGATGTCAATAAAGGCCAAGTTCCCTAGAAAATAATACATAGGTGTACGCAGGTGTGGATCAGTCACAGTCATCAAGATAATTAATATATTTCCTCCCAAAGTACAGAAATAAGTCAGAAAGAAGATGGTGAATAGTAAAAACTGCAATTCATTTAGGTTGGAGAATCCCAAGATGATGAATTCAGTTATAGCTGTTTTATTCTTTCTTTCCATGATGTCGCCTGGTTTCCTTTCAGGAATTGGGCAAAGAGAAGACCAGATTATAAAAATGAATCATATGCTGCAATAGCA-TTACCTGAAAAATAAGGG-AAAAAACGGTTACAAATAAAAGTAATCACCATTTATGTC-------A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29831368 1072 + 173848474 -AATTGGTGGCTGCCACTTGCTCCCTATAGTTTTGACAGCTTCTTTGATGTCCTTATTCCTCAATGTGTAAATTATAGGGTTTAGCAT-GGGGGTAACAACACTGTACAACACTGAAACCAACCTATCTTTCTTTAATGAGTAAGTTGAGATGGGCCGTACATATGTAAAGATGGCGCTGCCATAAAAGAGAAAGACAGTGGCCAGGTGGGAGGCACATGTAGAAAAGGCTTTTCGTCTTCCCTCTGAGGAGTGGATCCTCAAGATGGTGGAGATTATGCAAATGTAGGAAAGTATGATACAAAGGAAAGGAGTCCAACCAATGAAGACCCCAGTAGATAGCAGTGCCAACTCATTGACAGAAGTGTTTCCACAAGACAAGATCAGCAAAGGGGGGATGTCACAGAAGAAGTAATTAATCTGATTGTTGCCACAGAAGGGCAGGCGGAATGTCAACACTGTATGCACCACTGAGTTAAGGAAACCAGCAGCCCAGCATGAGGCTGCTAATTGATTGCATAGAACCTTGCTCAGAATAACTGAATACCTTAAAGGATTGCAGATTGCAATGTAACGATCATATGCCATTGCTGCCAGTAGGAGACACTCTGATCCTACAAAGAAAACAAATGCAAAAAGTTGAACCACACACCCTACAT-----AAGAAATGCTTTTTTTCTTTGAGAGGAGGTGCACCATCATCTGGGGGACATTGCTGGTGGCGTAGCAGATGTCAATAAAGGCCAAGTTCCCTAGAAAATAATACATAGGTGTACGCAGGTGTGGATCAGTCACAGTCATCAAGATAATTAATATATTTCCTCCCAAAGTACAGAAATAAGTCAGAAAGAAGATGGTGAGTAGTAAAAACTGCAATTCATTTAGGTTGGAGAATCCCAAGATGATGAATTCAGTTATAGCTGTTTTATTCTTTCTTTCCATGATGTCGCCTGGTTTCCTTTCAGGAATTGGGCAAAGAGAAGACCAGATTATAAAAATGAATCATATGCTGCAATAGCA-TTACCTGAAAAATAAGGG-AAAAAACGGTTACAAATAAAAGTAATCACCATTTATGTC-------A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5634178 1073 +   6154872 -AATTGGTGGCTGCCACTTGCTCCCTATAGTTTTGACAGCTTCTTTGATGTCCTTATTCCTCAATGTGTAAATTATAGGGTTTAGCATGGGGGGTAACAACACTGTACAACACTGAAACCAACCTATCTTTCTTTAATGAGTAAGTTGAGATGGGCCGTACATATGTAAAGATGGCGCTGCCATAAAAGAGGAAGACAATGGCCAGGTGGGAGGCACATGTAGAAAAGGCTTTTCATCTTCCCTCTGAGGAGTGGATCCTCAAGATGGTGGAGATTATGCAAATGTAGGAAAGTATGATACAAAGGAAAGGAGTCCAACCAATGAAGACCCCAGTGGATAGCAGTGCCAACTCATTGACAGAAGTGTTTCCACAGGACAAGATCAGCAAAGGGGGGATGTCACAGAAGAAGTAATTAATCTGATTGTTGCCACAGAAGGGCAGGTGGAATGTCAACACTGTATGCACCACTGAGTTAAGGAAACCAGCAGCCCAGCATGAGGCTGCTAACTGATTGCATAGAACCTTGTTCAGAATAACTGAATACCTTAAAGGATTGCAGATTGCAATGTAACGATCATATGCCATTGCTGCCAGTAGGAGACACTCTGATCCTACAAAGAAAACAAATGCAAAAAGTTGAACCACACACCCCACAT-----AAGAAATGCTTTTTTTCTTTGAGAGGAGGTGCACCATCATTTGGGGGACATTGCTGGTGGTGTAGCAGATGTCAATAAAGGCCAAGTTCCCTAGAAAATAATACATAGGTGTATGCAGGTGTGGATCAGTCACAGTCATCAAGATAATTAATATATTTCCTCCCAAAGTACAGAAATAAGTCAGAAAGAAGATGGTGAATAGTAAAAACTGCAATTCATTTAGGTTGGAGAATCCCAAGATGATGAATTCAGTTATAGCTGTTTGATTCTTTCTTTCCATGATGTCGCCTGGTTTCCTTTCAGGAATTGGGCAAAGAGAAGACCAGATTATAAAAATGAATCATATGCTGCAATAGCA-TGACCTGAAAAATAAGGG-AAAAAACGGTTACAAATAAAAGTAATCACCATTTATGTC-------A
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29862260 1069 + 172585720 -AATTGGTGGCTGCCACTTGCTCCCTATGGTTTTGACAGCTTCTTTGATGTCCTTATTCTTCAATGTGTAAATTATCGGGTTTAGCAT-GGGGGTAACAACACTGTACAAAACTGAAATCAACCTATCTTTCTTTAATGAGTAGGTTGAGATGGGCCGTACATACGTAAAGATGGCACTGCCATAAAAGAGAAAGACAATGGCCAGGTGGGAGGCACAGGTAGAAAAAGCTTTTCGTCTTCCCTCTGAAGAGTGGATCCTCAAGATGGTGGAGATTATGCAAATGTAGGAAAGTATGATACAAAGCAAAGGAGTCCAACCAATGAAGACCCCAATGGATAGCAGTGCCAACTCATTGACAGAAGTGTTTCCACAAGACAAGAGCAGCAAAGGTGGGATGTCACAGAAGAAGTAATTAATCTGATTGTTGCCACAGAAGGGCAGGCGGAATGTTAACACTGTATGCACCACTGAGTTAAGAAAACCAGCAGCCCAGCATGAGGCTGCTAATTGATTGTATACAACTTTGTTCATAATAACTGAATACCTTAAAGGATTGCAGATTGCAATGTAACGATCATATGCCATTGCTGCCAGTAGGAGACACTCTGATCCCACAGAGAAAACAAATGCAAAAAGTTGAACCACACACCCCGCAT-----AAGAAATGCTTTTTTTCTTTGAGAGGAGGTGCACCATCATCTGGGGGACATTGCTGGTGGTGTAGCAGATGTCAATAAAGGCCAAGTTCCCTAGAAAGTAATACATAGGTGTATGCAGGTGTGGATCAGTCACAGTTATCAAGATAATTAATATATTTCCTCCCAAAGTACAGAAATAAGTCAGAAAGCAGATGGTGAATAGTAAAAACTGCAATTCATTTGGATTGGAGAATCCCAAGATGATGAATTCAGTTAGAGCTGTTTGATTCTTTCTTTCCATGATGTTGCCTGGTTTCCTTTCGGGAATTGGGC-----GAAGACCAGATTATAAAAATGAATCATATGTTGCAATAGCAGTGACCTGAAAAATAAGGGGAAAAAACTGTTACAAATAAAAGCAATCACCATTTATATC-------A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29525233 1069 - 170955103 -AATTGGTGGCTGCCACTTGCTCCCTATGGTTTTGACAGCTTCTTTGATGTCCTTATTCTTCAATGTGTAAATTATCGGGTTTAGCAT-GGGGGTAACAACACTGTACAAAACTGAAATCAACCTATCTTTCTTTAATGAGTAGGTTGAGATGGGCCGTACATACGTAAAGATGGCACTGCCATAAAAGAGAAAGACAATGGCCAGGTGGGAGGCACAGGTAGAAAAAGCTTTTCGTCTTCCCTCTGAAGAGTGGATCCTCAAGATGGTGGAGATTATGCAAATGTAGGAAAGTATGATACAAAGCAAAGGAGTCCAACCAATGAAGACCCCAATGGATAGCAGTGCCAACTCATTGACAGAAGTGTTTCCACAAGACAAGAGCAGCAAAGGTGGGATGTCACAGAAGAAGTAATTAATCTGATTGTTGCCACAGAAGGGCAGGCGGAATGTTAACACTGTATGCACCACTGAGTTAAGAAAACCAGCAGCCCAGCATGAGGCTGCTAATTGATTGTATACAACTTTGTTCATAATAACTGAATACCTTAAAGGATTGCAGATTGCAATGTAACGATCATATGCCATTGCTGCCAGTAGGAGACACTCTGATCCCACAGAGAAAACAAATGCAAAAAGTTGAACCACACACCCCGCAT-----AAGAAATGCTTTTTTTCTTTGAGAGGAGGTGCACCATCATCTGGGGGACATTGCTGGTGGTGTAGCAGATGTCAATAAAGGCCAAGTTCCCTAGAAAGTAATACATAGGTGTATGCAGGTGTGGATCAGTCACAGTTATCAAGATAATTAATATATTTCCTCCCAAAGTACAGAAATAAGTCAGAAAGCAGATGGTGAATAGTAAAAACTGCAATTCATTTGGATTGGAGAATCCCAAGATGATGAATTCAGTTAGAGCTGTTTGATTCTTTCTTTCCATGATGTTGCCTGGTTTCCTTTCGGGAATTGGGC-----GAAGACCAGATTATAAAAATGAATCATATGTTGCAATAGCAGTGACCTGAAAAATAAGGGGAAAAAACTGTTACAAATAAAAGCAATCACCATTTATATC-------A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2512042 1069 -   2996164 -AATTGGTGGCTGCCACTTGCTCCCTATGGTTTTGACAGCTTCTTTGATGTCCTTATTCTTCAATGTGTAAATTATAGGGTTTAGCAT-GGGGGTAAAAACACTGTACAAAACTGAAATCAATCTATCTTTCTTTAATGAGTAAGTTGAGATGGGCCGTACGTATGTAAAGATGGCACTGCCATAAAAGAGAAAGACAATGGCCAGGTGGGAGGCACACGTAGAAAAGGCTTTTCGTCTTCCCTCTGAGGAGTGGATCCTGAAGATGGTGGAGATTATGCAAATGTAGGAAAGTACGATACAAAGGAAAGGAGTCCAACCAATGAAGACCCCAATGGATAGCAGTGCCAACTCATTGACAGAAGTGTTTCCACAAGACAAGAGCAGCAAAGGTGGGATGTCACAGAAGAAGTAGTTAATCTGATTGTTGCCACAGAAGGGCAGGTGAAATGTCAACACTGTATGCACCAATGAGTTAAGAAAACCAGCAGCCCAGCATGAGGCTGCTAATTGATTGTATACAACTTTGTTCATAATAACTGAATACCTTAAAGGATTGCAGATTGCAATGTAACGATCATATGCCATTGCTGCCAGTAGGAGAGACTCTGATCCCACAGAGAAAACAAATGCAAAAAGTTGAACCACACACCCTACGT-----AAGAAATGCTTTTTTTCTTTGAGAGGAGGTGCACCATCATCTGGGGGACATTGCTGGTGGTGTAGCAGATGTCAATAAAGGCCAAGTTCCCTAGAAAGTAATACATAGGTGTATGCAGGTGCGGATCAGTCACAGTTATCAAGATAATTAATATATTTCCTCCCAAAGTACAGAAATAAGTCAGAAAGAAGACGGTGAATAGTAAAAACTGCAATTCATTTGGGTTGGAGAATCCCAAGATGATGAATTCAGTTAGAGCTGTTTGATTCTTTCTTTCCATGATGTTGCCTGGTTTCCTTTCGGGAATTGGGC-----GAAGACCAGATTATAAAAATGAATCACATGTTGCAATAGCAGTGACCTGAAAAATAAGGGGAAAAAACTGTTACAAATAAAAGTAATCACCATTTATATC-------A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     257813 1069 +    766320 -AATTGGTGGCTGCCACTTGCTCCCTATGGTTTTGACAGCTTCTTTGATGTCCTTATTCTTCAATGTGTAAATTATAGGGTTTAGCAT-GGGGGTAACAACACTGTACAAAACTGAAATCAACCTATCTTTCTTTAATGAGTAAGTTGAGATGGGTCGTACATACGTAAAGATGGCACTGCCATAAAAGAGAAAGACAATGGCCACGTGGGAGGCACACGTAGAAAAGGCTTTTCGTCTTCCCTCTGAGGAGTGGATCCTCAAGATGGTGGAGATTATGCAAATGTAGGAAAGTACGATACAAAGGAAAGGAGTCCAGCCAATGAAGACCCCAATGGATAGCAGTGCCAACTCATTGACAGAAGTGTTTCCACAAGACAAGAGCAGCAAAGGTGGGATGTCACAGAAGAAGTAGTTAATCTGATTGTTGCCACAGAAGGGCAGGCAGAATGTCAACACTGTATGCACCACTCAGTTAAGAAAACCAGCAGCCCAGCATGAGGCTGCTAATTGATTGTATACAACTTTGTTCATAATAACTGAATACCTTAAAGGATTGCAGATTGCAATGTAACGATCATATGCCATTGCTGCCAGTAGGAGAGACTCTGATCCCACAGAGAAAACAAATGCAAAAAGTTGAACCATACACCCCGCAT-----AAGAAATGCTTTTTTTCTTTGAGAGGAGGTGCACCATCATCTGGGGGACATTGCTGGTGGTGTAGCAGATGTCAATAAAGGCCAAGTTCCCTAGAAAGTAATACATAGGTGTATGCAGGTGTGGATCAGTCACAGTTATCAAGATAATTAATATATTTCCTCCCAAAGTACAGAAATAAGTCAGAAAGAAGACGGTGAATAGTAAAAACTGCAATTCATTTGGGTTGGAGAATCCCAAGATGATGAATTCAGTTAGAGCTGTTTGATTCTTTCTTTCCATGATGTTGCCTGGTTTCCTTTCGGGAATTGGGC-----GAAGACCAGATTATAAAAATGAATCATATGTTGCAATAGCAGTGACCTGAAAAATAAGGGGAAAAAACTGTTACAAATAAAAGTAATCACCATTTATATC-------A
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28766566 1069 -  71996105 -AATTGATGGCTGCCACTTGCTCCCTATGGTTTTGACAGCTTCTTTGATGTCCTTATTCTTCAATGTGTAAATTATAGGGTTTAGCAT-GGGGGTAACAACACTGTACAAAACTGAAATCAACCTATCTTTCTTTAATGAGTAGGTTGAGATGGGCCGTACGTACGTAAAGATGGCACTGCCATAAAAGAGAAAGACAATGGCCAGGTGGGAGGCACAAGTAGAAAAGGCTTTTCGTCTTCCCTCTGAGGAGTGGATCCTGAAGATGGTGGAGATTATGCAAATGTAGGAAAGTACGATACAAAGGAAAGGAGTCCAACCTATGAAGACCCCAATGGATAGCAGTGCCAACTCATTGACAGAAGTGTTTCCACAAGACAAGAGCAGCAAAGGTGGGATGTCACAGAAGAAGTAGTTAATCTGATTGTTGCCACAGAAGGGCAGGCGAAATGTCAACACTGTATGCACCAATGAGTTAAGAAAACCAGCAGCCCAGCATGAGGCTGCTAATTGATTGTATACAACTTTGTTCATAATAACTGAATACCTTAAAGGATTGCAGATTGCAATGTAACGATCATATGCCATTGCTGCCAGTAGGAGACACTCTGATCCCACAGAGAAAACAAATGCAAAAAGTTGAACCACACACCCCACAT-----AAGAAATGCTTTTTTTCTTTGAGAGGAGGTGCACCATCATCTGGGGGACATTGCTGGTGGTGTAGCAGATGTCAATAAAGGCCAAGTTCCCTAGAAAGTAATACATAGGTGTATGCAGGTGTGGATCAGTCACGGTTATCAAGATAATTAATATATTTCCTCCCAAAGTACAGAAATAAGTCAGAAAGAAGATGGTGAATAGTAAAAACTGCAATTCATTTGGGTTGGAGAATCCCAAGATGATGAATTCAGTTAGAGCTGTTTGATTCTTTCTTTCCATGATGTTGCCTGGTTTCCTTTTGGGAATTGGGC-----GAAGACCAGATTATAAAAATGAATCATATGTTGCAATAGCAGTGACCTGAAAAGTAAGGGAAAAAAACTGTTACAAATAAAAGTAATCACCATTTATATC-------A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     241976 1069 -    352859 -AATTGGTGGCTGCCACTTGCTCCCTATGCTTTTGACAGCTTCTTTGATGTCCTTATTCTTCAATGTGTAAATTATAGGGTTTAGCAT-GGGGGTAACAACACTGTACAAAACTGAAATCAACCTATCTTTCTTTAATGAGTAAGTTGAGATGGGTCGTACATACGTAAAGATGGCACTGCCATAAAAGAGAAAGACAATGGCCACGTGGGAGGCACAGGTAGAAAAGGCTTTTCGTCTTCCCTCTGAGGAGTGGATCCTCAAGATGGTGGAGATTATGCAAATGTAGGAAAGTATGATACAAAGGAAAGGAGTCCAACCAATGAAGACCCCAATGGATAGCAGTGCCAACTCATTGACAGAAGTGTTTCCACAAGACAAGAGCAGCAAAGGTGGGATGTCACAGAAGAAGTAGTTAATCTGATTGTTGCCACAGAAGGGCAGGCGGAATGTCAACACTGTATGCACCACTGAGTTAAGAAAACCAGCAGCCCAGCATGAGGCTGCTAATTGATTGTATACAACTTTGTTCATAATAACTGAATACCTTAAAGGATTGCAGATTGCAATGTAACGATCATATGCCATTGCTGCCAGTAGGAGAGACTCTGATCCCACAGAGAAAACAAATGCAAAAAGTTGAACCACACACCCCGCAT-----AAGAAATGCTTTTTTTCTTTGAGAGGAGGTGCACCATCATCTGGGGGACATTGCTGGTGGTGTAGCAGATGTCAATAAAGGCCAAGTTCCCTAGAAAGTAATACATAGGTGTATGCAGGTGTGGATCAGTCACAGTTATCAAGATAATTAATATATTTCCTCCCAAAGTACAGAAATAAGTCAGAAAGAAGACGGTGAATAGTAAAAACTGCAATTCATTTGGGTTGGAGAATCCCAAGATGATGAATTCAGTTAGAGCTGTTTGATTCTTTCTTTCCATGATGTTGCCTGGTTTCCTTTCGGGAATTGGGC-----GAAGACCAGATTATAAAAATGAATCATATGTTGCAATAGCAGTGACCTGAAAAATAAGGGGAAAAAACTGTTACAAATAAAAGTAATCACCATTTATATC-------A
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     379110 1080 +    730504 -AATCGGTGGCTGCCACTTGCTCCCTACAGTTTTCACAGCAGCTTTGATGTCCTTATTCCTCAATGTATAAATTACAGGGTTTAGCAT-GGGGGTAACGACACTGTACAATACTGAGATCAGCCTGTCTTTCTCCAGGGAGTAAGCCGAGATGGGCCTCACATATGTGAAGATGGCGCTGCCATAATAGAGAACAACAATGGCCAGGTGGGAGGCACATGTAGAAAAGGCTTTTTGTCTTCCCTCTGAGGAGTGGATCCTCAAGACGCTGGAGATTATGAAAAGGTAGGAAAGAATGATGCACAAAAAAGGAGTCCACCCAATGAAGACCCCAATGCACAGCAGTGCCAGCTCATTGATAGAAGTGTCCCCACAAGACAAGATCAGCAAAGGGAGAATGTCACAGAAGAAATAATTAATCTGATTGTTGCCACAGAAGGGCAGGCGGAACGTCAACACCGTGTGAACCACTGAATTGAGAAAACCACCAGTCCAGCAGGAGGCTGCTAGCTGGGTGTACAGGGCCTTGTTCATAATGACAGAATACCTTAAAGGCTTACAGACTGCAATGTAACGATCATATGCCATTGCTGCCAGGAGGAGACACTCTGATCCTACAAAGGAAATAAATGCAAAAAGTTGAGCCACGCATCCTTCGT-----AGGAAATGCTTTTCTTCTCTGATAGAAGATGCACCATCATCTGAGGGACATTGGTGGTGGTGTAGCAGATGTCAAGAAAGGCCAAGTTCCCTAGAAAATAATACATGGGGGTATGTAGGTGTGGATCAGCCACAGTCACCAAGATAATGAATATATTTCCTCCCAAGGTACAGATATAAGTCAGAAAGAAGATGGTGAATAGTAAAATCTGCAATTCATTTAGGTTAGAGAATCCCAAGATTATGAATTCAGATAGAGCTGTTTGATTCTTGTCTTCCATGATATTGCCTGCTTTCTTTTTGGGAATTTGCA-AAGAGAAGCACAGACTACAATAATCAATCATATACTACAATAGCAATGGTCTGCAAAATGAGAGAAAAAAAGTGTTACAAATAAAAGTCATCATCATCTGCAGCAAGAACAA
i proCoq1.NW_012152574v1   I 255 C 0
s otoGar3.GL873742          2010796 1079 -   2232465 -AATTGGTGGCTGCCACCTGCTCCCTACAGTTTTCATTGCTTCTTTGATGTCCTTGTTCCTCAATGTATAAATTATAGGATTTAGCAT-GGGAGTAACAACACTGTACAATACTGAGATCAGCCTATCTTTCTCCAATGAGTAAGCTGAAATGGGCCGTACATATGTGAAGATGGCACTGCCATAATAGAGAAGAACAACGATCAGGTGGGAGGCACATGTCGAAAAGGCCTTTTTTCTTCCCTCTGAGGAGTGGATCCTCAAGATGGCAGAGATTATGTACAGGTAAGAAAGGACAATACACAAAAAAGGCATCCAACCAATGAAGACCCCAATGCAGAGCAGTGCCAACTTATTAATAGAAGTGTCCCCACAGGACAAGATCAGTAAAGGAGGAATGTCATAGAAGAAATAATTAATCTGATTGTTGCCACAGAAGGGCAGACGGAATGTCAACACCGTGTGCACCACTGAATTGAGAAAACCACCAGTCCAGCATGAAGCTGCTAACTGGCTACACAGGGTCTTGTTCATAATTACAGAATACCTTAAGGGTTTGCATATCGCAATGTAACGATCATATGCCATTGCTGCCAAGAGGAGACATTCTGATCCTACAAAGAAAATAAATGCAAAAAGTTGAGCCACACATCTCATAT-----AGGAAATGCTTTTCTTCTCTGACAGAAGATGCACCATCATTTGGGGAACATTCGTGGTGGTGTAGCAGATGTCAAGAAAGGCCAAGTTCCCTAGAAAATAATACATGGGAGTATGTAGGTGTGGATCAGCCATGGTCACCAAGATAATGAATATATTTCCTCCCAAAGTACAGATATAGGTCAGAAAAAAGATGGTGAACAGTAAAAACTGCAATTCATTTAGGTTAGAGAATCCCAAGATTACGAATTCAGATAGATCTGTTTGATTCTTGTCTTCCATGATATTGCCTGATTTCTTCTTGGGAATTGGGC-AAAGAGAGTATAGATTATAATAAATAATCAAATGCTACAACAGCAATGGTCTGCAAAACAAGTGAAAAAAA-TGTTACAAATAAAAGTCATTATCATCTATATCAAGCAGCA
i otoGar3.GL873742         I 1 C 0
s dasNov3.JH570741           486574 1062 +   1532071 AAGGGGATGGCTGCCACTTTCTACCCACAGCTTTCATAGCCTCTTTGATATCCTTATTCCTCAATGTGTAAATTAGAATGTTTAGCAT-AGGAGGAGCAACAGTGTACAATACTGAGATCAATCTGTCCTTCTTCAGTGAGTAAGAGGAGATGAGCTGTATGTATGTGAATATGGAGCTGCTGAAGAAGAGAAGGACAATGACCAGGTGGGATGCACAGGTGGATAAGGCTTTGCGTCTCCCCTCTGAGGAGCGGATTGTCAAGATGGTGGAGATGATGTAAAGTTAAGAAAGGATGATGCACAAGAAAGGGGTCCAACCAATGAAGACCACAATGCAGAGCAATGCCAGCTCA---ACAGAAGTGTCCCCACAGGACAAAACCAACAGAGGGGGGATGTCACAGAAGAAGTAATCAATCTGGTTGTTGCCACAGAAGGGCAGGTGGAATGTCAGCGCTGTGTGCACCACCCAGTTGAGGAAACCACCCGTCCAGCAGGAGGCCGCTGACTAGCTACTGAGCACTTTGTTCATGAGAACCGAGTATCTTAAGGGTTTACAGATGGCAGTATAGTGATCATAAGCCATTGCTCCCCAGAGAAAGCACTCTGACCCTACAAAGAAAATGAATGCAAAGAGTTGAGCCATGCATCCCCCCTCCCAAAAGAAATGCTTTTCTTCTCTGACAGGAGATGCACCATCATCTGAGGGACATTGATGGTGGGATAGCAGATGTCCAGGAAGGCCAAGTTCCCTAGAAAATAATACATGGGTGTGTGCAGGTGTGGCTGAGCCACACTTAGTGAAATGATGAAGACATTTCCTCCTAGAGTACAGATGTAAGTCATGAAGAAGACGGTGAATAGTAATAACTGCAGTTCATTTAGGTTGGAGAATCCCAAGAT---GAATTCAGAAAGAGCTGTTTGGTTCTTTTCTTCCATGAGGATGACTGATTTTCTTTTGGGAACTGGGC-AAAGAGAGCACAGATTACAAT----AATCATGTGATGTGA------TACTCTGCAAAACAAAAAGATAAAA-TGCCACAAATAAAAATCATTGCAACCTACATC-------A
i dasNov3.JH570741         C 0 I 813
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=579025.000000
s hg38.chr6_GL000254v2_alt   622157 103 +   4827813 AACCAGAGAAGCAGCATTCTTTTGCAAACCATAGCTCCTACCTACCATGCAACACAGATATAAATACATCCAATGTTTCACCTGCAGATCAAATCTTTTT-AAA
s panTro5.chr6             29594209 103 + 175400573 AACCAGAGAAGCAGCATTCTTTTGCAAACCATAGCTCCTACCTACCATGCAACACAGATATAAATACATCCAATGTTTCACCTGCAGATCAAATCTTTTT-AAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29832440 103 + 173848474 AACCAGAGAAGCAGCATTCTTTTGCAAACCATAGCTCCTACCTACCATGCAACACAGATATAAATACATCCAATGTTTCACCTGCAGATCAAATCTTTTT-AAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5635251 104 +   6154872 AACCAGAGAAGCAGCATTCTTTTGCAAACCATAGCTCCTACCTACCATGCAACACAGATATAAATACATCCAGTGTTTCACCTGCGGATCAAATCTTTGTAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29863329 104 + 172585720 AACCAGAGAAACAGCATTCTTTTGCAAACCATAGCTCCTACCTACCATGCAACACAGATATAAATACATCCAATGTTTCACCTGCAGATCAAACCTTTGTAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29526302 104 - 170955103 AACCAGAGAAACAGCATTCTTTTGCAAACCATAGCTCCTACCTACCATGCAACACAGATATAAATACATCCAATGTTTCACCTGCAGATCAAACCTTTGTAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2513111 104 -   2996164 AACCAGAGAAGCAGCATTCTTTTGCAAACCATAGCTCCTACCTACCATGCAACACAGATATAAATACATCCAATGTTTCACCTGCAGATCAAATCTTTGTAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     258882 104 +    766320 AACCAGAGAAGCAGCATTCTTTTGCAAACCATAGCTCCTACCTACCATGCAACACAGATATAAATACATCCAATGTTTCACCTGCAGATCAAATCTTTGTAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28767635 104 -  71996105 AACCAGAGAAGCAGCATTCTTTTGCAAACCATAGCTCCTACCTACCATGCAACACAGATATAAATACATCCAATGTTTCACCTGCAGATCAAATCTTTGTAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     243045 104 -    352859 AACCAGAGAAGCAGCATTCTTTTGCAAACCATAGCTCCTACCTACCACGCAACACAGATATAAATACATCCAATGTTTCACCTGCAGATCAAATCTTTGTAAAA
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     380190 101 +    730504 AACCAGAGAAGCATTG--CTCTGGTAAACCATAGCTCATACCTACCACCCAACACAGTCGTAAATACATCCAATGTTTCACTTGTAGATCAAATTTATTTAAA-
i proCoq1.NW_012152574v1   C 0 I 503
s otoGar3.GL873742          2011875 101 -   2232465 AACCAGAGAAGCAGTA--CTCTTGTAAATCACAGCTCATAACTACCACCCAACACAGATATAAATGCATCCAATATTTCACATGTAGATGAAATTTCTGTAAA-
i otoGar3.GL873742         C 0 I 1
s dasNov3.JH570741           488449  98 +   1532071 AACCCAGCATGTAGCACATTCTTGCAAATAATG-----TAACTATCGGCCAACACACATGAAGATCCATCCAATGCTTTACCTGTAGATCAAATATTGGCAAA-
i dasNov3.JH570741         I 813 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=680709.000000
s hg38.chr6_GL000254v2_alt   622260 153 +   4827813 -TATACAACACTGGAAGTTTTAAATTAGAA-------TACAAATGGACACCATATGTCCT-AGAGTTCTCTGTTAATAATGGCTGGGTCATGCTCA-----CCGGCATTTTCTTGGGGATGTGTGAACTTGTGCTGTAGAATGCGATTTCTAGAA--GAATCTCTGGTA
s panTro5.chr6             29594312 153 + 175400573 -TATACAACACTGGAAGTTTTAAATTAGAA-------TACAAATGGACACCATATGTCCT-AGAGTTCTCTGTTAATAATGGCTGGGTCATGCTCA-----CCAGCATTTTCCTGGGGATGTGTGAACTTGTGCTGTAGAATGCGATTTCTAGAA--GAATCTCTGGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29832543 153 + 173848474 -TATACAACACTGGAAGTTTTAAATTAGAA-------TACAAATGGACACCATATGTCCT-AGAGTTCTCTGTTAATAATGGCTGGGTCATGCTCA-----CCAGCATTTTCCTGGGGATGTGTGAACTTGTGCTGTAGAATGCGATTTCTAGAA--GAATCTCTGGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5635355 153 +   6154872 -TATACAACACGGGAAGTTTTAAATTAGAA-------TACAAATGGACACCATATGTCCT-AGAGTTCTCTGTTAATAATGGCTGGGTCATGCTCA-----CCGGCATTTTCTTGGGGATGTGTGAACTTGTGCTGTAGAATGCGATTTCTAGAA--GAATCTCTGGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29863433 151 + 172585720 -TATACAACACTGGAAGTTTTAAATTAGAG-------TACAAAAGGACACCATTTGTCCT-AGAGT--TCTGTTAATAACGGCTGGGTCATGCTTA-----CCAGCATTTTCTTGGGGATGTGTGAACTTGTGCTGTAGAATGCAGTTTATAGAA--GAATCTCTGATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29526406 151 - 170955103 -TATACAACACTGGAAGTTTTAAATTAGAG-------TACAAAAGGACACCATTTGTCCT-AGAGT--TCTGTTAATAACGGCTGGGTCATGCTTA-----CCAGCATTTTCTTGGGGATGTGTGAACTTGTGCTGTAGAATGCAGTTTATAGAA--GAATCTCTGATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2513215 151 -   2996164 -TATACAACACTGGAAGTTTTAAATTAGAG-------TACAAAAGGACACCATTTGTCCT-AGAGT--TCTGTTAATAATGGCTGGGTCATGCTTA-----CCAGCATTTTCTTGGGGATGTGTGAACTTGTGCTATAGAATGCAGTTTATAGAA--GAATCTCTGATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     258986 151 +    766320 -TACACAACACTGGAAGTTTTAAATTAGAG-------TACAAAAGGACACTATTTTTCCT-AGAGT--TCTGTTAATAACGGCTGGGTCATGCTTA-----CCAGCATTTTCTTGGGGATGTGTGAACTTGTGCTGTAGAATGCAGTTTATAGAA--GAATCTCTGATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28767739 151 -  71996105 -TATACAACACTGGAAGTTTTAAATTAGAG-------TACAAAAGGACACCATATGTCCT-AGAGT--TCTGTTAATAATGGCTGGGTCATGCTTA-----CCGGCATTTTCTTGGGGATGTGTGAACTTGTGCTGTAGAATGCAGTTTATAGAA--GAATCTCTGATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     243149 151 -    352859 -TACACAACACTGGAAGTTTTAAATTAGAG-------TACAAAAGGACACCATTTTTCCT-AGAGT--TCTGTTAATAACGGCTGGGTCATGCTTA-----CCAGCATTTTCTTGGGGATGTGTGAACTTGTGCTGTAGAATGCAGTTTATAGAA--GAATCTCTGATA
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2011977 164 -   2232465 -TACATAGCACTGGAAGTTTTTAATTAGAAAGAAAATCACCAAAGGACACAACACATCCTAAGAGTTCTCTATTAATAATATCTATGTCAGGCCCAACTGTCAGGCATTTTCTCAGTGATGTGTGAA--TGTGTTGCAGAATACAATTTATAGAA--GAATCTCAAGTC
i otoGar3.GL873742         I 1 C 0
s dasNov3.JH570741           488547 153 +   1532071 TTATGCAGCTCGGGTAATTCTAAATTATAT---GTACCACCAAAGGGCACCATACATCCTGAGAATTTTCTGTTGATAAAGACTG-GTTGGGTCCA-----CCCACATTTTCTT---GATGTGTGATGGT-TGTTGACGAA--AAGTTTGTAAAAAGAGATTTCGGGC-
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     380291 503 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=362241.000000
s hg38.chr6_GL000254v2_alt   622413 68 +   4827813 TTCATTTGCTTCTTTGAAGCCATCCCTGCTCTCCTTTTTCATACTTCAACGTTAATATAAATTTTGTT
s panTro5.chr6             29594465 68 + 175400573 TTCATTTGCTTCTTTGAAGCCATCCCTGCTCTCCTTTTTCATACTTCAACGTTAATATAAATTTTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29832696 68 + 173848474 TTCATTTGCTTCTTTGAAGCCATCCCTGCTCTCTTTTTTCATACTTCAACGTTAATATAAATTTTGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5635508 68 +   6154872 TTCATTTGCTTCTTTGAAGCCATCCCTGCTCTCCTTTTTCATACTTCAACGTTAATATAAATTTTGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29863584 67 + 172585720 TTCATTTGCTTCTTTGAAGCCATCCCTGCTCCCCTTGTTCATACTTC-ACGTTCACATAAATTTTGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29526557 67 - 170955103 TTCATTTGCTTCTTTGAAGCCATCCCTGCTCCCCTTGTTCATACTTC-ACGTTCACATAAATTTTGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2513366 67 -   2996164 TTCATTTGCTTCTTTGAAGCCATCCCTGCTCCCCTTTTTCATACTTC-ACGTTCATATAAATTTTGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     259137 67 +    766320 TTCATTTGCTTCTTTGAAGCCATCCCTGCTCCCCTTTTTCATACTTC-ACGTTCATATAAATTTTGTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28767890 67 -  71996105 TTCATTTGCTTCTTTGAAGCCATCCCTGCTCCCCTTTTTCATACTTC-ACGTTAATATAAATTTTGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     243300 67 -    352859 TTCATTTGCTTCTTTGAAGCCATCCCTGCTCCCCTTTTTCATACTTC-ACGTTCATATAAATTTTGTT
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     380794 68 +    730504 TTCATTAGCTTCTTTAAAGCCATCCCTGCTCCCTCTTTCCATCCTTAATTCCTGATATAAAATTTGTT
i proCoq1.NW_012152574v1   I 503 C 0
s otoGar3.GL873742          2012141 67 -   2232465 TTCATTAGCTTCTTT-AAGCCACCCCTGCTCGTTCTTTCCATCTTTGGTTGCTGATAAAATATTTCTT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           488700 68 +   1532071 TTCATTAGCTTCTTTAGAGCCACCCTTGCTCCCTCTTTCCATACTTTAAGGCTGATAAACCATTTAAT
i dasNov3.JH570741         C 0 I 1262
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=861135.000000
s hg38.chr6_GL000254v2_alt   622481 153 +   4827813 TTATATTCTTTTCCGATTAAAATTAATGTATTTGTTTTAGAATATTTGGGAAAAATATAGAAAAGAAAATTTA-AAACATTAAAAATCTTTAGTA--GTCACCAGAGAAAATCTCTATTAATGATTTGGTATATGTTCTTCTGATCCATTTTCCAT
s panTro5.chr6             29594533 153 + 175400573 TTATATTCTTTTCCGATTAAAATTAATGTATTTGTTTTAGAATATTTGGGAAAAATATAGAAAAGAAAATTTA-AAACATTAAAAATCTTTAGTA--GTCACCAGAGAAAATCTCTATTAATGATTTGGTATATGTTCTTCTGATCCATTTTCCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29832764 153 + 173848474 TTATATTCTTTTCCGATTAAAATTAATGTATTTGTTTTAGAATATTTGGGAAAAATATAGAAAAGAAAATTTA-AAACATTAAAAATCTTTAGTA--GTCACCAGAGAAAATCTCTATTAATGATTTGGTATATGTTCTTCTGATCCATTTTCCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5635576 153 +   6154872 TTATATTCTTTTCCGATTAAAATTAATGTATTTGTTTTAGAATATTTGGGAAAAATATAGAAAAGAAAATTTA-AAACATTAAAAATCTTTAGTA--GTCACCAGAGAAAATCTCTATTAATGATTTGGTATATGTTCTTCTGATCCATTTTCCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29863651 153 + 172585720 TTGTAttcttttctgattaaaattaatgtatttgttttagaatatttgagaaaaatatagaaaagaaaattta-aaacattaaaaatctttcgta--gtcaccagagaaaacctctattaatgatttggtgtatgttcttcggatccatttttcat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29526624 153 - 170955103 TTGTAttcttttctgattaaaattaatatatttgttttagaatatttgggaaaaatatagaaaagaaaattta-aaacattaaaaatctttcgta--gtcaccagagaaaacctctattaatgatttggtgtatgttcttcggatccatttttcat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2513433 153 -   2996164 TTATAttcttttctgattaaaattaatatatttgttttagaatatttgggaaaaatatagaaaagaaaattta-aaacattaaaaatctttagta--gtcaccagacaaaacctctgttaatgatttggtgtatgttcttcggatccatttttcat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     259204 153 +    766320 TTGTAttcttttctgattaaaattaatgtatttgttttagaatatttgggaaaaatatagaaaagaaaattta-aaacattaaaaatctttagta--gtcaccagacaaaacctctgttaatgatttggtgtatgttcttcggatccatttttcat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28767957 153 -  71996105 TTGTATTATTTTCTGATTAAAATTAATGTATTTGTTTTAGAATATTTGGGAAAAATATAGAAAAGAAAATTTA-AAACATTAAAAATCTTTAGTA--GTCACCAGAGAAAACCTCTATTAATGATTTGGTATATGTTCTTCAGATCCATTTTTCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     243367 153 -    352859 TTGTAttcttttctgattaaaattaatgtatttgttttagaatatttgggaaaaatatagaaaagaaaattta-aaacattaaaaatctttagta--gtcaccagacaaaacctctgttaatgatttggtgtatgttcttcggatccatttttcat
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     380862 149 +    730504 TTCTA-TTTTTTCTAATTAAAA-TAATGTGTTTGTTTTAGAATATTTTG--AAAATATAGAAAAGAAAATTTTAAAACATTAAAAATCCTTAATA--TCCACCAGAG-AAAGCTCTATTAATGGTTTGGTATATGTCTTTCTGATTCATTTTTCAT
i proCoq1.NW_012152574v1   C 0 I 184
s otoGar3.GL873742          2012208 147 -   2232465 TACTATTTTTTTCTGATTAAAA-TAATGTATTTGCTTTAGAATATTTTG--AAAATATAG-AAGGAAAATTTT--AACATTAAAAATCTTTAGTG--TCTACCAGAG-AAATCTCTACTAATGATTTGGTATATGTCTTACTGATTCATTTTTCAT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           490030 154 +   1532071 TTGCtttgttttctaattaaaagcaatgtatgtattttagaata-acaaaaaaaatggagaaaaataaaataa-aaacatttaaaagccttaatatgtccaccaatgaaaacctctactaatattttggtgtatgcttttctaagcagttttccat
i dasNov3.JH570741         I 1262 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=96534.000000
s hg38.chr6_GL000254v2_alt   622634 26 +   4827813 ATA-GAAATGTT-GACTAGAGGATCAAA-
s panTro5.chr6             29594686 26 + 175400573 ATA-GAAATGTT-GAATAGAGGATCAAA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29832917 26 + 173848474 ATA-GAAATGTT-GAATAGAGGATCAAA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5635729 26 +   6154872 ATA-GAAATGTT-GAATAGAGGATCAAA-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29863804 26 + 172585720 gca-gaaatgtT-GAATAGAGGATCAAA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29526777 26 - 170955103 gca-gaaatgtT-GAATAGAGGATCAAA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2513586 26 -   2996164 aca-gaaatgtT-GAATGGAGGATCAAA-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     259357 26 +    766320 aca-gaaatgtT-GAATAGAGGATCAAA-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28768110 26 -  71996105 ACA-GAAATGTT-GAATAGAAGATCAAC-
i chlSab2.chr17            C 0 I 17
s manLeu1.NW_012099655v1     243520 26 -    352859 aca-gaaatgtT-GAATAGAGGATCAAA-
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2012355 27 -   2232465 ACATGAAACTTC-AAAATGAGAATAAGA-
i otoGar3.GL873742         C 0 I 1
s dasNov3.JH570741           490184 28 +   1532071 gta-tgcatattcaaacttggaattagaa
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     381011 184 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=11183.000000
s hg38.chr6_GL000254v2_alt   622660 3 +   4827813 AGT
s panTro5.chr6             29594712 3 + 175400573 AGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29832943 3 + 173848474 AGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5635755 3 +   6154872 AGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29863830 3 + 172585720 AGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29526803 3 - 170955103 AGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2513612 3 -   2996164 AGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     259383 3 +    766320 AGC
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     243546 3 -    352859 AGC
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2012383 3 -   2232465 AGT
i otoGar3.GL873742         I 1 C 0
s dasNov3.JH570741           490212 3 +   1532071 tgt
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     381011 184 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e chlSab2.chr17            28768136 17 -  71996105 I

a score=128857.000000
s hg38.chr6_GL000254v2_alt   622663 31 +   4827813 ACCTA----TTTTAATCTGATTTTTCCT------------------TAATTTT
s panTro5.chr6             29594715 31 + 175400573 ACCTA----TTTTAATCTGATTTTTCCT------------------TAATTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29832946 31 + 173848474 ACCTA----TTTTAATCTGATTTTTCCT------------------TAATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5635758 31 +   6154872 ACCTA----TTTTAATCTGATTTTTCCT------------------TAATTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29863833 31 + 172585720 ACCTA----TTTTAACCTGATTTTTCCT------------------TCAtttt
i rheMac8.chr4             C 0 I 318
s macFas5.chr4             29526806 31 - 170955103 ACCTA----ttttaacctgatttttcct------------------tcatttt
i macFas5.chr4             C 0 I 318
s macNem1.NW_012011356v1    2513615 31 -   2996164 ACCTA----TTTTAACCTGATTTTTCCT------------------TCATTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     259386 31 +    766320 ACCTA----TTTTAACCTGATTTTTCCT------------------TCATTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28768153 31 -  71996105 ATCTA----TTTTAACCTGATTTTTCCT------------------TCATTTC
i chlSab2.chr17            I 17 C 0
s manLeu1.NW_012099655v1     243549 31 -    352859 ACCTA----TTTTAACCTGATTTTTCCT------------------TCATTCC
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2012386 31 -   2232465 ACATA----TTTTAAACTGCTTTCCCTT------------------TAAGTAC
i otoGar3.GL873742         C 0 I 17
s dasNov3.JH570741           490215 49 +   1532071 acttaatagttttaacc----ttttccttttagctccatattgtgataatttt
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     381011 184 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=541783.000000
s hg38.chr6_GL000254v2_alt   622694 117 +   4827813 CCGTGGC-AATACATTTTATGCTAAAACATGATCTTTGAGTTGTATTCAAGTATTTGTATGAATATAGCAAAGTTTTTATATATCCCACCCTTATTAATGAATATTTATATTGTTTTA
s panTro5.chr6             29594746 117 + 175400573 CCGTGGC-AATACATTTTATGCTAAAACATGATCTTTGAGTTGTATTCAAGTATTTGTATGAATATAGCAAAGTTTTTATATATCCCACCCTTATTAATGAATATTTATATTGTTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29832977 117 + 173848474 CCGTGGC-AATACATTTTATGCTAAAACATGATCTTTGAGTTGTATTCAAGTATTTGTATGAATATAGCAAAGTTTTTATATATCCCACCCTTATTAATGAATATTTATATTGTTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5635789 117 +   6154872 CTGTGGC-AATACATTTTATGCTAAAACATGATCTTTGAGTTGTATTCAAGTATTTGTATGAATATAGCAAAGTTTTTATATATCCCACCCTTATTAATGAATATTTATATTGTTTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29864182 117 + 172585720 CCATGGC-AATAAGTATTATGCTAAAACATGATCTTTGAGTTGTATTCAAGCACTTGTGTGAATATAGCAAAGTTTTTCTATATCCCACCCTTATTAATGAATATTTATATTATTTTA
i rheMac8.chr4             I 318 C 0
s macFas5.chr4             29527155 117 - 170955103 ccatggc-aataagtattatgctaaaacatgatctttgagttgtattcaagcacttgtgtgaatatagcaaagtttttctatatcccacccttattaatgaatatttatattatttta
i macFas5.chr4             I 318 C 0
s macNem1.NW_012011356v1    2513646 117 -   2996164 CCATGGC-AACAAGTATTATGCTAAAACGTGATCTTTGAGTTGTATTCAAGTACTTGTGTGAATACAGCAAAGTTTTTCTATATCCCACCCTTATTAATGAATATTTATATTATTTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     259417 117 +    766320 CCATGGC-AATAAGTATTATGCTAAAACATGATCTTTGAGTTGTATTCAAGCACTTGTGTGAATATGGCAAAGTTTTTCTATATCCCACCCTTATTAATGAATATTTATATTATTTTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28768184 117 -  71996105 CCATGGC-AATAAGTATTATGTTAAAACATGATCTTTGAGTTGTATTCAAGTACTTGTGTGAACACAGCAAAGTTTTTCTATATCCCATCCTTATTAGTGAATATTTATATTATTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     243580 117 -    352859 CCATGGC-AATAAGTATTATGCTAAAACATGATCTTTGAGTTGTATTCAAGCACTTGTGTGAATATGGCAAAGTTTTTCTATATCCCACCCTTATTAATGAATATTTCTATTATTTTA
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2012434  96 -   2232465 ACACAGCAAATAAATATTCTCCTAAAATATGATCTT-------TATT---------------ATATGGCAAGCTTTTCACATATTCTATCCTTATTAATGAATACTGATACCATTTTA
i otoGar3.GL873742         I 17 C 0
s dasNov3.JH570741           490264 117 +   1532071 ccatggt-gataaatattctcctgatacgtgatctttgagttatacacaacatcttctataattacagcaaactttcaatatatcctaccgttgttggtggatatttatatcgtttta
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     381011 184 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=439457.000000
s hg38.chr6_GL000254v2_alt   622811 75 +   4827813 TTTGTTCATTTTTGATATGATAAATTTCAACAAGAAGCATATTGAATTAGATTCCCTGAATTTGGGGTTAGGTTA
s panTro5.chr6             29594863 75 + 175400573 TTTGTTCATTTTTGATATGATAAATTTCAACAAGAAGCATATTGAATTAGATTCCCTGAATTTGGGGTTAGGTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29833094 75 + 173848474 TTTGTTCATTTTTGATATGATAAATTTCAACAAGAAGCATATTGAATTAGATTCCCTGAATTTGGGGTTAGGTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5635906 75 +   6154872 TTTGTTCATTTTTGATATGATATATTTCAACAAGAAGCATATTGAATTAGATTCCCTGAATTTTGGGTTAGGTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29864299 75 + 172585720 TTTGTTAATTTTTGATATGATAAATTTCAATAAGAAGCAtattgaattagattccctgaatttggagtaaggtta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29527272 75 - 170955103 tttgttaatttttgatatgataaatTTCAATAAGAAGCATATTGAATTAGATTCCCTGAATTTGGAGTAAGGTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2513763 75 -   2996164 TTTGTTAATTTTTGATATGATAAATTTCAATAAGAAGCAtattgaattagattccctgaatttggagtaaggtta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     259534 75 +    766320 TTTGTTAATTTTTGATATGATAAATTTCAATAAGAAGCAtattgaattagattccctgaatttggagtaaggtta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28768301 75 -  71996105 TTTGTTAATTTTTGATATGATAATTTTCAATAAGAAACATATTGAATTAGATTCCCTGAATTTGGAGTAAGGTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     243697 75 -    352859 TTTGTTAATTTTTGATATGATAAATTTCAATAAGAAGCAtattgaattagattccctgaatttggagtaaggtta
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     381195 70 +    730504 TTTGTTTATTTTTGCTATGATAAATTTCAATAATA-----ATTGAATTATATTCCCTGAATTTTGGGTTAGGTTA
i proCoq1.NW_012152574v1   I 184 I 1680
s otoGar3.GL873742          2012530 75 -   2232465 TTTGTTCATTTTTGCTATGATAAATTTCAACAGTAAGCATATTGAATTAGGGTCTCTGAATTTTGGGTTAGGTTA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           490381 75 +   1532071 agtatttatctttgcaatgataaatttcagtgatacacatATGGAATTAGATGTCCTGAATTTTGAGTCAGATTC
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=1894842.000000
s hg38.chr6_GL000254v2_alt   622886 404 +   4827813 TCTGAATTTTTATAAACTTTCCAAGAGACTTATCCTAAT-GAATTAGAAACCTATTGCTATAGATCATCAATCTGGAAAATTCAAGAGCTATTTGGCTGGTGCAGGAATTAGTGTCTGTTT--CAACAAATTATTGTTAAGTGCTTCATATAGAAGGATGCTGATAATCTctgagcacttcctacacagcatctcatttagtctttacataaatcctttaagataagtaata--tttatcattcccattctctggatgagagcaccaagcctcagcaagataaacgtctggaagatgtcacgcagctagcaggtAAAAAAAAGGTAGCTTTATC-ACTCCCAAAGCTAATATACTTTCAGTTGAGTGGCTAAAAATTTAATTTCCATTAACTTATGACAACAGAATGCCC
s panTro5.chr6             29594938 404 + 175400573 TCTGAATTTTTATAAACTTTCCAAGAGACTTATCCTAAT-GAATTAGAAACCTATTGCTATAGATCATCAATCTGGAAAATTCAAGAGCTATTTGGCTGGTGCAGGAATTAGTGTCTGTTT--CAACAAATTATTGTTAAGTGCTTCATATAGAAGGATGCTGATAATCTctgagcacttcctacacagcatctcatttagtctttacataaatcctttaagataagtaata--tttatcattcccattctctggatgagagcaccaagcctcagcaagataaacgtctggaagatgtcacgcagctagcaggtaaaaaaaaggtagctttatc-actcccaaagctaatatactttcaattgAGTGGCTAAAAATTTAATTTCCATTAACTTATGACAACAGAATGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29833169 403 + 173848474 TCTGAATTTTTATAAACTTTCCAAGAGACTTATCCTAAT-GAATTAGAAACCTATTGCTATAGATCATCAATCTGGAAAATTCAAGAGCTATTTGGCTGGTGCAGGAATTAGTGTCTGTTT--CAACAAATTATTGTTAAGTGCTTCATATAGAAGGATGCTGATAATCTctgagcacttcctacacagcatctcatttagtctttacataaatcctttaagataagtaata--tttatcattcccattctctggatgagagcaccaagcctcagcaagataaacgtctggaagatgtcacgcagctagcaggt-aaaaaaaggtagctttatc-actcacaaagctaatatactttcaattgAGTGGCTAAAAATTTAATTTCCATTAACTTATGACAACAGAATGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5635981 404 +   6154872 TCTGAATTTTTATAAACTTTCCAAGACACTTATCCTAAT-GAATTAGAAACCTATTGCTATATATCATCAATCTGGAAAATTCAAGAACTATTTGGCTGGTGCAGGAATTAGTGTCTGTTT--CAACAAATTATTGTTAAGTGCTTCATATAGAAGGATGCTGATAATCTctgagcacttcctacacagcatctcatttagtctttacataaatcctttaagataagtaata--tttatcattcccattctctagatgagagcaccgagtctcagcaagataaatgtctagaagatgtcacgcagctagcaggtaaaagaaaggtagctttatc-actcccaaagctaatatactttcaattgAGTGGCTAAAAATTTAATTTCCATTAACTTATGACAACAGAATGCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29864374 403 + 172585720 tctgtattttaataaaatttccaagagactcATCCTAAT-GAATTAGAAACTTATTGCTATAGATCATCAATCTAGAAAATTCAAGAACTATTTGGCAGGTGCAGGAATTAGTGTCTGTTT--CAACAAATCAttgttaagtgcttcatatagaaggacgctgataatctctgagcacttcccacacagcatctcatttagtctttacataaatcctttaagataaataata--tttatcattcctattctctgaatgagaacatcaggtctcagcaagataaatgtctggcagatgttatgcagctagcaggt-aaaaaaaggtagctttatc-actcccaaagctaatatactttcaattgAGTGGCTAAAAATTTAATTTCCATTAACTTATGACAACATAATGCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29527347 403 - 170955103 TCTGTATTTTAATAAAATTTCCAAGAGACTCATCCTAAT-GAATTAGAAACTTATTGCTATAGATCATCAATCTAGAAAATTCAAGAACTATTTGGCAGGTGCAGGAATTAGTGTCTGTTT--CAACAAATCAttgttaagtgcttcatatagaaggacgctgataatctctgagcacttcccacacagcatctcatttagtctttacataaatcctttaagataagtaata--tttatcattcctattctctgaatgagaacatcaggtctcagcaagataaatgtctggcagatgttatgcagctagcaggt-AAAAAAAGGTAGCTTTATC-ACTCCCAAAGCTAATATACTTTCAATTGAGTGGCTAAAAATTTAATTTCCATTAACTTATGACAACATAATGCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2513838 402 -   2996164 tctgtattttaataaaatttccaagagactcATCCTAAT-GAATTAGAAACCTATTGCTATAGATCATCAATCTAGAAAATTCAAGAACTATTTGGCAGGCGCAGGAATTAGTGTCTGTTT--CAACAAATCATTGTTACGTGCTTCATATAGAAGGACGCTGATAATCTctgagcacttcccacacaacatctcgtttagtctttacataaatcctttaagataagtaata--tttatcattcccattctctgaatgagaacaccgagtctcagcgagataaatgtctggcagatgttatg-agctagcaggt-aaaaaaaggtagctttatc-actcccaaagctaatatactttcaattgAGTGGCTAAAAATTTAATTTACATTAACTTATGACAACATAATGCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     259609 403 +    766320 tctgtattttaataaaatttccaagagactcATCCTAAT-GAATTAGAAACCTATTGCTATAGATCATCAATCTAGAAAATTCAAGAACTATTTGGCAGGTGCAGGAATTAGTGTCTGTTT--CAACAAATCATTGTTAAGTGCTTCATATAGAAGGATGCTGATAATCTctgagcacttcccacacagcatctcatttagtctttacataaatcctttaagataagtaata--tttatcattcctagtctctgaatgagaacaccaggtctcagcaagataaatgtctggcagatattatgcagctagcaggt-aaaaaaatgtagctttatc-actcccaaagctaatatactttcaattgAGTGGCTAAAAATTTAATTTTCATTAACTTATGACAATATAATGCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28768376 403 -  71996105 TCTGTATTTTAATAAAATTTCCAAGAGACTCATCCTAAT-GAATTAGAAATCTATTGCTATAGATCATCAATCTAGAAAATTCAAGAACTATTTGGCAGGTGCAGGAATTAGTGTCTGTTT--CAACAAATCAttgttaagtgcttcatatagaaggacgctgataatctctgagcacttcccacacagcatctcatttagtctttacataaatcctttaagataagtaata--tttatcattcccattctctgaatgagaacaccgagtctcagcgagataaatgtctggcaggtgttatgcagctagcaggt-AAAAAAAGGTAGCTTTATC-ACTCCCAAAGCTAATATACTTTCAATTGAGTGGCTAAAAATTTAATTTCCATTAACTTATGACAACATAATGCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     243772 403 -    352859 tctgtattttaataaaatttccaagagactcATCCTAAT-GAATTAGAAACCTATTGCTATAGATCATCAATCTAGAAAATTCAAGAACTATTTGGCAGGTGCAGGAATTAGTGTCTGTTT--CAACAAATCATTGTTAAGTGCTTCATATAGAAGGATGCTGATAATCTctgagcacttcccacacagcatctcatttagtctttacataaatcctttaagataagtaata--tttatcattcctattctctgaatgagaacaccaggtctcagcaagataaatgtctggcagatgttatgcagctagcaggt-TAAAAAATGTAGCTTTATC-ACTCCCAAAGCTAATATACTTTCAATTGAGTGGCTAAAAATTTAATTTCCATTAACTTATGACAATATAATGCTC
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2012605 388 -   2232465 CCTGTATTTCTGTAAACTCTCTAAGATACTTATCTCAAT-AAATTAGAGGCCCACTGATGT-GATCATTAACCTGGAAAATTCAAGAGCCATTTGACTAATGTACGATTCAGTATCTG------GACAAATTATTG-TAAGTGCTATGTGAAGAAGGGCACTAATAATCCTtaagtactttctatatagcaaatcatttagtctttacatatgttatttaagataagtaata---ctatcattaccatttttcagatgaaaacattgattctaaacaagataaatgtctggcaaacattatgcagtgggcaggt-ggaaaaa-acagCTTCATC-CTTCTCAAAGCTAAAATAGTTTCATTTGAATGGCTAAGAATTTAATTTCCACTAACCAATGACAACAG-------
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           490456 386 +   1532071 TTTGTATTAT------------AAGATACTCATACAAATAAAATTAGAGACCCACTGGTTCAGGTCACTGATCTTGAAAATCCAGAAGTCATTCGGCTAATGCAGGACTCCATGTCTTTGTGGTGGCCAAATAATTTTAAGTGCTGTATAGAAGAGGGCAGCAATCCTCtctgatcacttcc-atgaagcacctcctttatttgttacagcaaacagatgaggcaaataataaatttatt----ctacgtttcagatgaaaacactg----TTGATAAAATGTCTGGCAGGCAGAAGTTATTCAGTAAGCAGGT-AGAAAAAGACAGCCTTAGCTTCTCCCAAAGCTAATATACTTTCTACTGAATGGC--AAAATTTAGTTTTCCTTTATTGATGACAACTGAATTCCC
i dasNov3.JH570741         C 0 I 184
e proCoq1.NW_012152574v1     381265 1680 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=4500.000000
s hg38.chr6_GL000254v2_alt   623290 2 +   4827813 TT-
s panTro5.chr6             29595342 2 + 175400573 TT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29833572 2 + 173848474 TT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5636385 2 +   6154872 TT-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29864777 2 + 172585720 TT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29527750 2 - 170955103 TT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2514240 2 -   2996164 TT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     260012 2 +    766320 TT-
i cerAty1.NW_012002711v1   C 0 I 6840
s chlSab2.chr17            28768779 2 -  71996105 TT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     244175 2 -    352859 TT-
i manLeu1.NW_012099655v1   C 0 I 6929
s dasNov3.JH570741           491026 2 +   1532071 -ta
i dasNov3.JH570741         I 184 C 0
e proCoq1.NW_012152574v1     381265 1680 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2012993 0 -   2232465 C
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=2790901.000000
s hg38.chr6_GL000254v2_alt   623292 599 +   4827813 AAAAAACACTTCTCTTGTTTTGAATATAACCTACGTTCATACAACTGAATTATTTTAACTGGTTACAAATTGTTATGACTTCTATTTCTGACTGTTAATGGCAATGTGCTATGCCTGCAGTGTTTTGATGGTTAAATCCAATTGTTTCTAAATACCTGGT-TTTT--ATTTGAATATGTTTA--TTTGAACAATCAATTTCTAGTGTAGTTTTTTATTTCCTGGACCAGCTATAGATTAATTTAAATGTTCATGTTTGTGTTATTAAAAGATACTCTTC-TAGAGCTTAGTTTAAGTTGGTTAATAAAAATGTTTAAT--------------------------------------------------------AAAATTAAAACAGTTGTAGGGAGAATCCCCTAATTTAAAATGCTCAAGGCCTAATTCAAGTGAGAAAAATTAATCTGCAGTTTGAT-GTTTGAAGCaaattataaaa---act---tagataaataaaacaaaataaaaACTTAAAAATGAA----GATAA-TTGTTGTATATTCATTCAAACTATATACTTTATCGATTGCCCTCACCTATAGACAAATATGCATTTCAATGTCAAGTTTGAGAGGTGGC-----------------------TTAATTGTGCTTTTG-TTGTAATTGCTG---TCTTCTTTCCTCGTGAACTAC
s panTro5.chr6             29595344 599 + 175400573 AAAAAACACTTCTCTTGTTTTGAATATAACCTACGTTCATACAACTGAATTATTTTAACTGGTTACAAATTGTTATGACTTCTATTTCTGACTGTTAATGGCAATGTGCTATGCCTGCAGTGTTTTGATGGTTAAATCCAATTGTTTCTAAATACCTGGT-TTTT--ATTTGAATATGTTTA--TTTGAACAATCAATTTCTAGTGTAGTTGTTTATTTCCTGGACCAGCTATAGATTAATTTAAATGTTCATGTTTGTGTTATTAAAAGATACTCTTC-TAGAGCTTAGTTTAAGTTGGTTAATAAAAATGTTTAAT--------------------------------------------------------AAAATTAAAACAGTTGTAGGGAGAATCCCCTAATTTAAAATGCTCAAGGCCTAATTCAAGTGAGAAAAATTAATCTGCAGTTTGAT-GTTTGAAGCAAATTATAAAA---ACT---TAGATAAATAAAGCAAAATAAAAACTTAAAAATGAA----GATAA-TTGTTGTATATTCATTCAAACTATATACTTTATCGATTGCCCTCACCTATAGACAAATATGCATTTCAATGTCAAGTTTGAGAGGTGGC-----------------------TTAATTGTGCTTTTG-TTGTAATTGCTG---TCTTCTTTCCTCGTGAACTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29833574 599 + 173848474 AAAAAACACTTCTCTTGTTTTGAATATAACCTACGTTCATACAACTGAATTATTTTAACTGGTTACAAATTGTTATGACTTCTATTTCTGACTGTTAATGGCAATGTGCTATGCCTGCAGTGTTTTGATGGTTAAATCCAATTGTTTCTAAATACCTGGT-TTTT--ATTTGAATATGTTTA--TTTGAACAATCAATTTCTAGTGTAGTTGTTTATTTCCTGGACCAGCTATAGATTAATTTAAATGTTCATGTTTGTGTTATTAAAAGATACTCTTC-TAGAGCTTAGTTTAAGTTGGTTAATAAAAATGTTTAAT--------------------------------------------------------AAAATTAAAACAGTTGTAGGGAGAATCCCCTAATTTAAAATGCTCAAGGCCTAATTCAAGTGAGAAAAATTAATCTGCAGTTTGAT-GTTTGAAGCaaattataaaa---act---tagataaataaaacaaaataaaaACTTAAAAATGAA----GATAA-TTGTTGTATATTCATTCAAACTATATACTTTATCGATTGCCCTCACCTATAGACAAATATGCATTTCAATGTCAAGTTTGAGAGGTGGC-----------------------TTAATTGTGCTTTTG-TTGTAATTGCTG---TCTTCTTTCCTCGTGAACTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5636387 598 +   6154872 AAAAAACACTTCTCTTGTTTTGAATATAACCTAGGTTCATACAACTGAATTATTTTAACTGGTTACAAATTGTTATGACTTCTATTTCTGACTGTTAATGGCAATGTGCTATGCCTGCAGTGTTTTGATGGTTAAATCCAATTGTTTCTAAATACCTGGT-ATTT--ATTTGAATATATTTA--TTTGAACAATCAATTTCTAGTGTAGTTGTTTATTTCCTGGACCAGCTATAGATTAATTTAAATGTTCATGTTTGTGTTATTAAAAGATACTCTTC-TAGAGCTTAGTTTAAGTTGGTTAATAAAAATGTTTAAT--------------------------------------------------------AAAATTAAAACAGTTGTAGGGAGAATCCCCTAATTTAAAATGCTCAAGGCCTAATTCAAGTGAGAAAAATT-ATCTGCAGTTTGAT-GTTTGAAGCaaattataaaa---act---tagataaataaaacaaaataaaaACTTAAAAATGAA----GATAA-TTGTTGTATATTCATTCAAATTATATACTTTATTGATTGCCCTCACCTATAGACAAATATGCATTTCAATGTCAAGTTTGAAATGTGGC-----------------------TTAATTGTGCTTTTG-TTGTAATTGCTG---TCTTCTTTCCTCGTGAACTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29864779 595 + 172585720 AAAAAATGCTTCTTTTGTTTTGAATATAACCTAGGTTTATACAACTGAATTATTTTAACTGGTTACAAATTGTTATGACTTCTGTTTCTGACTGTTAATGGCAATGTGCTATGCCTACAGTGTTTTGATGGTTAAATCCAATTGTTTCTAAATATCTGGT-TTTT--ATTTGAATGTGTTTA--TTTGAACAATCAATTTCTAGTGTAGTTGTTTATTTCCTGGACCAGCTATAGATCAATTTAAATATTCATGTTTGTGTTATTAAAAGATACTG-TC-TAGAGTTTAGTTTTAATTGGTTAATAAAAATGTTTAAT--------------------------------------------------------AAAATTAAAACAGTTGTAGGGAGAATCCCCTAATTTAAAATGCTCAAGGTCTAATTCAAGTGAAAAAAATTAATCTGCAGTTTGAT-GTTTGAAGCAAATTATAAAA---ACT---TAGATAAATAAAAT---ATAAAAATTTTTAAATGAA----GATAA-TTGTTGTATATTCATTCAAACTATATACTTTATTGATTGCCCTCACCTATATACAAATATGCATTTCAATGTCAAGTTTGAAAGATGGG-----------------------TTAATTGTGCTTTTG-TTGTAATTGCTG---TCTTCTTTCCTTGTGAACTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29527752 595 - 170955103 AAAAAATGCTTCTTTTGTTTTGAATATAACCTAGGTTTATACAACTGAATTATTTTAACTGGTTACAAATTGTTATGACTTCTGTTTCTGACTGTTAATGGCAATGTGCTATGCCTACAGTGTTTTGATGGTTAAATCCAATTGTTTCTAAATATCTGGT-TTTT--ATTTGAATGTGTTTA--TTTGAACAATCAATTTCTAGTGTAGTTGTTTATTTCCTGGACCAGCTATAGATCAATTTAAATATTCATGTTTGTGTTATTAAAAGATACTG-TC-TAGAGTTTAGTTTTAATTGGTTAATAAAAATGTTTAAT--------------------------------------------------------AAAATTAAAACAGTTGTAGGGAGAATCCCCTAATTTAAAATGCTCAAGGTCTAATTCAAGTGAAAAAAATTAATCTGCAGTTTGAT-GTTTGAAGCAAATTATAAAA---ACT---TAGATAAATAAAAT---ATAAAAATTTTTAAATGAA----GATAA-TTGTTGTATATTCATTCAAACTATATACTTTATTGATTGCCCTCACCTATATACAAATATGCATTTCAATGTCAAGTTTGAAAGATGGC-----------------------TTAATTGTGCTTTTG-TTGTAATTGCTG---TCTTCTTTCCTTGTGAACTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2514242 599 -   2996164 AAAAAACGCTTCTTTTGTTTTGAATATAACCTAGGTTTATACAACTGAATTATTTTAACTGGTTACAAATTGTTATTACTTTTGTTTCTGACTGTTAATGGCAATGTGCTATGCTTGCAGTGTTTTGATGGTTAAATCCAATTGTTTCTAAATATCTGGT-TTTT--ATTTGAATATGTTTA--TTTGAACAATCAATTTCTAGTGTAGTTGTTTATTTCCTGGACCAGCTATAGATTAATTTAAATGTTCATGCTTGTGTTATTAAAAGATACTGTTC-TAGAGTTGAATTTAAATTGGTTAATAAAAATGTTTAAT--------------------------------------------------------AAAATTAAAACAGTTGTAGGGAGAATCCCTTAATTTAAAATCCTCAAGGTCTAATTCAAGTGAGAAAAATTAATCTGTAGTTTGAT-GTTTGAAGCAAATTATAAAA---ACT---TAGATAAATAAAATATAATAAAAAATTTTAAATGAA----GATAA-TTGTTGTATATTCATTCAAACTATACACTTTATTGATTGCCCTCACCTATATACAAATATGCATTTCAATGTCAAGTTTGAAAGATGGC-----------------------TTAATTGTGCTTTTG-TTGTAATTGCTG---TCTTCTTTCCTTGTGAACTAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     266854 598 +    766320 AAAAAATGCTTCTTTTGTTTTGAATATAACCTAGGTTTATACAACTGAATTATTTTAACTGGTTACAAATTGTTATGACTTCTGTTTCTGACTGTTAATGGCAATGTGCTATGCCTACAGTGTTTTGATGGTTAAATCCAATTGTTTCTAAATATCTGGT-TTTT--ATTTGAATGTGTTTA--TTTGAACAATCAATTTCTAGTGTAGTTGTTTATTTCCTGGACCAGCTATAGATCAATTTAAATATTCATGTTTGTGTTATTAAAAGATACTG-TC-TAGAGTTTAGTTTAAATTGGTTAATAAAAATGTTTAAT--------------------------------------------------------AAAATTAAAACAGTTGTAGGGAGAATCCCCTAATTTAAAATGCTCAAGGTCTAATTCAAGTGAAAAAACTTAATCTGCAGTTTGAT-GTTTGAAGCAAATTATAAAA---ACT---TAGATAAATAAAATATAATAAAAATTTTTAAATGAA----GATAA-TTGTTGTATATTCATTCAGACTATATACTTTATTGATTGCCCTCACCTATATACAAATATGCATTTCAATGTCAAGTTTGAAAGATGGG-----------------------TTAATTGTGCTTTTG-TTGTAATTGCTG---TCTTCTTTCCTTGTGAACTAC
i cerAty1.NW_012002711v1   I 6840 C 0
s chlSab2.chr17            28768781 599 -  71996105 AAAAAACCCTTCTTTTGTTTTGAATATAACCTAGGTTTATACAACTGAATTATTTTAACTGGTTACAAATTGTTATGACTTCTGTTTCTGACTGTTAATGGCAATGTGCTATGCCTGCAGTGTTTTGATGGTTAAATCCAATTGTTTCTAAATATCTGGT-TTTT--ATTTGAATATGTTTA--TTTGAATAATCAATTTCTAGTGTAGTTGTTTATTTCCTGGACCAGCTATAGATTAATTTAAATGTTCATGTTTGTGTTATTAAAAGATACTA-TTATAGAGTTTAATCTAAATTGGTTAATAGAAATGTTTAAT--------------------------------------------------------AAAATTAAAACAGTTGTAGGGAGAATACCCTAATTTAAAATACTCAAGGTCTAATTCAAGTGAGAAAAATTAATCTGCAGTTTGAT-GTTTGAAGCAAATTATAAAA---ACT---TAGATAAATAAAATATAATAAAAATTTTTAAATGAA----GATAA-TTGTTGTATATTCATTCAAACTATATACTTTATTGATTGCCCTCACCTATATACAAATATGTATTTCAATGTCAAGTTTGAAAGATGGT-----------------------TTAATTGTGCTTTTG-TTGTAATTGCTG---TCTTCTTTCCTTGTGAACTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     251106 598 -    352859 aaAAAATGCTTCTTTTGTTTTGAATATAACCTAGGTTTATACAACTGAATTATTTTAACTGGTTACAAATTGTTATGACTTCTGTTTCTGACTGTTAATGGCAATGTGCTATGCCTACAGTGTTTTGATGGTTAAATCCAATTGTTTCTAAATATCTGGT-TTTT--ATTTGAATGTGTTTA--TTTGAACAATCAATTTCTAGTGTAGTTGTTTATTTCCTGGACCAGCTATAGATCAATTTAAATATTCATGTTTGTGTTATTAAAAGATACTG-TC-TAGAGTTTAGTTTAAATTGGTTAATAAAAATGTTTAAT--------------------------------------------------------AAAATTAAAACAGTTGTAGGGAGAATCCCCTAATTTAAAATGCTCAAGGTCTAATTCAAGTGAAAAAACTTAATCTGCAGTTTGAT-GTTTGAAGCAAATTATAAAA---ACT---TAGATAAATAAAATATAATAAAAATTTTTAAATGAA----GATAA-TTGTTGTATATTCATTCAGACTATATACTTTATTGATTGCCCTCACCTATATACAAATATGCATTTCAATGTCAAGTTTGAAAGATGGG-----------------------TTAATTGTGCTTTTG-TTGTAATTGCTG---TCTTCTTTCCTTGTGAACAAC
i manLeu1.NW_012099655v1   I 6929 C 0
s otoGar3.GL873742          2012993 662 -   2232465 -AAGAATACTTCTCTGGTTTT-AATACAACTTAGTTTCATACAATTAAGTTACTTTTACTAGTTAGAAACTTTTATGACTTGCGATC----TTCTTCATGGCAATGTGCCAACCCTATAGTGCTTTGATGGTTAAATC----TGTTATTGAACACTCAGTCTTTT--ACTTAAACATGTTTATTTTTGAGCAATCAATTCC-----CAGTTATTTATTTCCTGGGCTAAC-ATAGATTAATTTAAATATTCGTG-TTGTGTTATTAAAATATAACGTTC-TAGAGTTTAGCTTAAATTGGTTAATAGAAATATTTGATATAATTAAATACATTGTTTCAGAGTTTATCTTAAATTGGTTCataaaaatattttaaaaattaaaaCAGTTGTAGGGAGAATCCCTCAATTTAAGATGGTCAAGTTATAATTCAG--GAGAAAAATTAATTTGTAGTTTGAT-GCTTTTAGCAAATTATAGAA---ACCAAAGAGATAAATAAAACA----AAACTTTTGAAAATGAA-------AG-ATACTGTATATTTATTCAAACTATATACTTTATTGATTGCCCTAACATGTAGATAAATCTACATTTGAATTTAAAGTTTGGAAGGTGGGAGAATTAAGGCCAATACACTAGACTAATGATACTTGTACTTTTAATTGTTATCTTCTTCTTTCCTTCCTAACTAC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           491028 551 +   1532071 aaaaaaTAATTCACTAGTTTTTAATACAATTTAGGTTTGTTAAATCAAACTATTTTAATTAGTTAAAAACTTTTATGGTT-----------------------ATGTGCTATTCCTACAGTATATTGATAGCTATATCT-ATTTTTACTGAACTTCAGGT-CTTTTAATTTGAGTCTATTTA--TTTAGACAATTGATTCCCAATGTGG----TTATTTCCTGCCCTCACTATAAATTAATTAACAGGTACATGTTTGTGTTTTTAAGGGATAGCGATC-TATTGTTTAACTAAAGATCACTAACAAAAATGCTTGA---------------------------------------------------------AAAATTAAAATGGTTGTAGGGAG----------TTTGAAATGTTCAAGTTCTTATTCAAGGGGGAAA---------GTAATTTTATGGTTTGAAGCAAATTATAACATTCATA---GAGATAAATAAAAC-----ATGAATTTAATAATGAATGTGGATAAGTTATTCCATATTCATTCAAACAATGGACTTCATTGCTGGCCCTGACCTGTTCAAAAACACACA-TCGAATTCCAAATTGGGAAGGAAGG-----------------------TTTTCTGTACATTTC-TTTT-----TTT---TCtttttttgtctttatttat
i dasNov3.JH570741         C 0 I 2596
e proCoq1.NW_012152574v1     381265 1680 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=1212837.000000
s hg38.chr6_GL000254v2_alt   623891 258 +   4827813 TGTGGATATTTTTAATGAAGGGAGAGGATAAGTTGAAA--------AAATTCACATAATATAGTATTTCACATTACCACAACTGAATAAATTCACTGGGACAATTTTCATTCCATCTACAGAAGAACTCCAAAATTGTATTCTCAAATCAATCTTT---TTCCCTATTCCAAATCTCTATCTCCCCTTTCATCTTTTTTAACATTT-----------CCTTCCACTTCTGAGGAGGAA-------------------TTAA-------------------CCCTT-CTACTCATTTTATTCAACAAATGTATTTTAAgg
s panTro5.chr6             29595943 258 + 175400573 TGTGGATATTTTTAATGAAGGGAGAGGATAAGTTGAAA--------ACATTCACATAATATAGTATTTCACATTACCACAACTGAATAAATTCACTGGGACAATTTTCATTCAATCTACAGAAGAACTCCAAAATTGTATTCTCAAATCAATCTTT---TTCCCTATTCCAAATCTCTATCTCCCCTTTCATCTTTTTTAACATTT-----------CCTTCCACTTCTGAGGAGGAA-------------------TTAA-------------------CCCTT-CTACTCATTTTATTCAACAAATGTATTTTAAgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29834173 258 + 173848474 TGTGGATATTTTTAATGAAGGGAGAGGATAAGTTGAAA--------AAATTCACATAATATAGTATTTCACATTACCACAACTGAATAAATTCACTGGGACAATTTTCATTCCATCTACAGAAGAACTCCAAAATTGTATTCTCAAATCAATCTTT---TTCCCTATTCCAAATCTCTATCTCCCCTTTCATCTTTTTTAACATTT-----------CCTTCCACTTCTGAGGAGGAA-------------------TTAA-------------------CCCTT-CTACTCATTTTATTCAACAAATGTATTTTAAgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5636985 258 +   6154872 TGTGGATATTTTTAATGAAGGGAGAGGATAAGTTGAAA--------AAATTCACATAATATAGTATTTCACATTACCACAACTGAATAAATTCACTGGGACAATTTTCATTCCATCTACAGAAGAACTCCAAAATTGTATTCTGAAATCAATCTTT---TTCCCTATTCCAAATCTCTATCTCCCCTTTCATCTTTTTTAACATTT-----------CCTTCCACTTCTGAGGAGGAA-------------------TTAA-------------------CCCTT-CTACTCATTTTATTCAACAAATATATTTTAAgg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29865374 258 + 172585720 GGTGGGTGTTTTTAATGAAGGGCGAGGATAAGTTGAAA--------AAATTCACACAATATAGTATTTCACATTACCACAACCAAATAAATTCACTAGTACAATTTTCATTCCATCTACAGAAGAACTCTCAAATTGTATTCTCAAATCCATCTTT---TTCCCTATTCCAAATCTCTATCTTCCCTTTTATCTATTTTAACCTTT-----------CCTTCCACTTCTGAGGAGGAA-------------------TTAA-------------------CCCTT-CTACTCATTTTATTCACCAAATATATTTTAAgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29528347 258 - 170955103 GGTGGGTGTTTTTAATGAAGGGAGAGGATAAGTTGAAA--------AAATTCACACAATATAGTATTTCACATTACCACAACCAAATAAATTCACTAGTACAATTTTCATTCCATCTACAGAAGAACTCTCAAATTGTATTCTCAAATCCATCTTT---TTCCCTATTCCAAATCTCTATCTTCCCTTTTATCTATTTTAACCTTT-----------CCTTCCACTTCTGAGGAGGAA-------------------TTAA-------------------CCCTT-CTACTCATTTTATTCACCAAATATATTTTAAgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2514841 258 -   2996164 TGTGGATGTTTTTAATGAAGGGAGAGGATAAGTTGAAA--------AAATTCACACAATATAGTATTTCACATTACCACAATCGAATAAATTCACTAGTACAATTTTCATTCCATCTACAGAAGAACTCTCAAATTGTATTCTCAAATCCATCTTT---TTCTCTATTCCAAATCTCTATCTTCCCTTTCATATATTTTAACCTTT-----------CCTTCCACTTCTGAGGAGGAA-------------------TTAA-------------------CCCTT-CTACTCATTTTATTCACCAAATATATTTTAAgg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     267452 258 +    766320 GGTGGGTGTTTTTAATGAAGGGCAAGGATAAGTTGAAA--------AAATTCACACAATATAGTATTTCACATTACCACAACCAAATAAATTCACTAGTACAATTTTCATTCCATCTACAGAAGAACTCTCAAATTGTATTTTCAAATCAATCTTT---TTCCTTATTCCAAATCTCTATCTTCCCTTTCATCTATTTTAACCTTT-----------CCTTCCACTTCTGAGGAGGAA-------------------TTAA-------------------CCCTT-CTACTCATTTTATTCACCAAATATATTTTAAgg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28769380 258 -  71996105 TGTGGATGTTTGTAATGAAGGGAAAGGATAAGTTGAAA--------AAATTCACACAATATAGTATTTCACATTACCACAATCGAATAAATTCACTAGTACAATTTTCATTCCATCTACAGAAGAACTCTCAAATTGTATTCTCAAATCAATCTTT---TTCCCTATTCCAAATCTCTATCTTCCCTTTCATCTATTTTAACCTTT-----------CCTTCCACTTCTGAGGAGGAA-------------------TTAA-------------------CCCTT-CTACTCATTTTATTCACCAAATATATTTTAAgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     251704 258 -    352859 GGTGGGTGTTTTTAATGAAGGGCGAGGATAAGTTGAAA--------AAATTCACACAATATAGTATTTCACATTACCACAACCAAATAAATTCACTAGTACAATTTTCATTCCATCTACAGAAGAACTCTCAAATTGTATTTTCAAATCAATCTTT---TTCCTTATTCCAAATCTCTATCTTCCCTTTCATCTATTTTAACCTTT-----------CCTTCCACTTCTGAGGAGGAA-------------------TTAA-------------------CCCTT-CTACTCATTTTATTCACCAAATATATTTTAAgg
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2013655 277 -   2232465 TGTGGATGTTTTCAGCTGAGGGGGAAGACAATTTGAAT--------AAATTCCCAAAATATATTATTTCAAATTACCAGAACAAAATAAACTCACTAGTACAATTTTTATTCCACCAATGTAAT-ACCCCTGATTCCTGTTCTCTAATCAATCTTTTCCTCCCCCATTCCTAATCTTTACCTATCCTTTCATTTTTTTAATC--TT-----------CTTTCCATTTCTGTGGAGGAG-------------------TAAGAGCAACACATGAGGCTAATCCCTT-CTGTTCATTGTATTTGACAAATATATTTTGAGA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           494175 295 +   1532071 TGTAGATGTGTTCAGGGAGTGGAGAGGATATGTTAAAGAAAGGTTTAAATTCTCCTAAAGTAGTACTTCACATTACCAGAACCTAATTACTTCTCAGTTACAAATTTCATTCCACTAACAGAAGAATCCCCAAATCCTGTTCTCCAATTCA--TTT---CCCCCCACTCCTAGGCATTCTCAGGCCTTACTTTTCTCTTTGTCTTTTCATTTGGAAACCTTTTACTTCTGAGGAAGAAAGTAGACCAACTGACTAGGCTAG-------------------CCCTTATTGCCcattctattcaacaaatatattttgagg
i dasNov3.JH570741         I 2596 I 219
e proCoq1.NW_012152574v1     381265 1680 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=1478964.000000
s hg38.chr6_GL000254v2_alt   624149 348 +   4827813 caaaaatgtggaaaaaagggaac--tggcacagtgttaatggaaatgtaaattaatagagccattt-tggaaaacag--tgcagtttcttcaaaaaactaaaaatgcaactactatgtgatccagcaattccacttctggatatatattcaaaggaattgaaatcagtatctcaaagagatatctgcactcccatggtctttgcagcattattcacagtagc-----catggaaacaacctaaatcttca-ccaatagatgaatgact----------------------------------------------------aaagaa---atgt--------------tatatatacctggtggaatactatgcagccttt-aaaaaaagaaaatcctgtcatttctgacatgggttaagctagaggaca
s panTro5.chr6             29596201 348 + 175400573 caaaaatgtggaaaaaagggaac--tggcacagtgttaatggaaatgtaaattaatagagccattt-tagaaaacag--tgcagtttcttcaaaaaactaaaaatgcaactactatgtgatccagcaattccacttctggatatatattcaaaggaattgaaatcagtatctcaaagagatatctgcactcccatggtctttgcagcattattcacagtagc-----catggaaacaacctaaatcttca-ccaatagatgaatgact----------------------------------------------------aaagaa---atgt--------------tatatatacctggtggaatactatgcagccttt-aaaaaaagaaaatcctgtcatttctgacatgggttaagctagaggaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29834431 347 + 173848474 caaaaatgtggaaaaaagggaac--tggcacagtgttaatggaaatgtaaattaatagagccattt-tagaaaacag--tgcagtttcttcaaaaaactaaaaatgcaactactatgtgatccagcaattccacttctggatatatattcaaaggaattgaaatcagtatctcaaagagatatctgcactcccatggtctttgcagcattattcacagtagc-----catggaaacaacctaaatcttca-ccaatagatgaatgact----------------------------------------------------aaagaa---atgt--------------tatatataccgtgtggaatactatgcagccttt--aaaaaagaaaatcctgtcatttctgacatgggttaagctagaggaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5637243 348 +   6154872 caaaaatgtggaaaaaagggaac--tggcacagtgttaatggaaatgtaaattaatagctccattt-tggaaaacag--tgcagtttcttcaaaaaactaaaaatgcaactactatgtgatccagcaattccacttctggatatatattcaaaggaattgaaatcagtatctcaaagagatatctgcactcccatggtctttgcagcattattcacagtagc-----catggaaacaacctaaatcttca-ccaatagatgaatgact----------------------------------------------------aaagaa---atgt--------------tatatatacctggtggaatactatgcagccttt-aaaaaaagaaaatcctgtcatttctgacatgggttaacctagaggaca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29865632 351 + 172585720 caagactgtggaagaaagggaac--tggcacagtgttaatggaaatgtaaactaatagagccattt-tggaaaacag--tgcagcttcttcaaaaaactaaaaatgcaactactatgtgatccagcaattccacttctggatatatatacaaaggaattgaaatcagtatcttaaaaaggtatctgcactcccatggtctttgcagcattattcgcagtagc-----catggaaacaacctaaatcttca-tcagtagatgaatgaat----------------------------------------------------aaagaaaatatgt--------------tatatatacctggtggaatactatgcagccttt-aaaaaaagaaaatcctgtcatttctgacatggatgaacatggaggaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29528605 351 - 170955103 caagactgtggaagaaagggaac--tggcacagtgttaatggaaatgtaaactaatagagccattt-tggaaaacag--tgcagcttcttcaaaaaactaaaaatgcaactactatgtgatccagcaattccacttctggatatatatacaaaggaattgaaatcagtatcttaaaaaggtatctgcactcccatggtctttgcagcattattcgcagtagc-----catggaaacaacctaaatcttca-tcagtagatgaatgaat----------------------------------------------------aaagaaaatatgt--------------tatatatacctggtggaatactatgcagccttt-aaaaaaagaaaatcctgtcatttctgacatggatgaacgtggaggaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2515099 351 -   2996164 caagactgtggaaaaaagggaac--tggcacagtgttaatggaaatgtaaattaatagagccattt-tggaaaacag--tgcagcttcttcaaaaaactaaaaatgcaactactatgtgatccagcaattccacttctggatatatatacaaaggaattgaaatcagtatcttaaagaggtatctgcactcccatggtctttgcagcattattcacagtagc-----catggaaacaacctaaatcttca-tcagtagatgaatgaat----------------------------------------------------aaagaaaatatgt--------------tatatatacctggtggaatactatgcagccttt-aaaaaaagaaaatcctgtcatttctgacatttatgaacgtggaggaca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     267710 351 +    766320 caagactgtggaaaaaagggaac--tggcacagtgttaatggaaatgtaaactaatagagccattt-tggaaaacag--tgcagtttcttcaaaaaactaaatatgcaactactatgtgatccagcaattccacttctggatatatatccaaaggaattgaaatcagtatctcaaagagatatctgcactcccatggtctttgcagcattattcacagtagc-----catggaaacaacctaaatcttca-tcagtagatgaatgaat----------------------------------------------------aaagaaaatatgt--------------tatgtatacctggtggaatactatgcagccttt-aaaaaaagaaaatcctgtcatttctgacgtggatgaacgtggaggaca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28769638 352 -  71996105 caagactgtggaaaaaagggaac--tggcacagtgttaatggaaatgtaaattaatagagccattt-tggaaaacag--tgcagcttcttcaaaaaactaaaaatgcaactactatgtgatccagcaattccacttctggatatatatccaaaggaattgaaatcagtatcgcaaagagatatctgcactaccatggtctttgcagcattattcacagtagc-----catggaaacaacctaaatcttca-tcagtagatgaatgaat----------------------------------------------------aaagaaaatacgt--------------tatatatacctggtggaatactatgcagcctttaaaaaaaagaaaatcctgtcatttctgacatggatgaacgtggaggaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     251962 351 -    352859 caagactgtggaaaaaagggaac--tggcacagtgttaatggaaatgtaaactaatagagccattt-tggaaaacag--tgcagtttcttcaaaaaactaaatatgcaactactatgtgatccagcaattccacttctggatatatatccaaaggaattgaaatcagtatctcaaagagatatctgcactcccatggtctttgcagcattattcacagtagc-----catggaaacaacctaaatcttca-tcagtagatgaatgaat----------------------------------------------------aaagaaaatatgt--------------tatgtatacctggtggaatactatgcagccttt-aaaaaaagaaaatcctgtcatttctgacgtggatgaacgtggaggaca
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2013932 404 -   2232465 TAaggatgtggagaaaagggaacttttatacactgttggtggaaatgtagattaatata--tatttatgagaaatagtatgcaggtttctcaaaaaaatag------aattaccatatgatccagccagtccacttctgaatacatct--gaaggaaatgaaatcagcatctc----agatatctgaactgccatgttcactgaagcattatgcacagtagctaagatatgaaagcagcctacatgttaagttaatgaatgaatgaatgaataacaaaaatgtgttactttgtaccctcaatgagtctcaaacaataaaaaAAGAAAATATGTtatatatatacatatatatatatataATGAAATACTTTTCAACCTTT---GAAAAGAAAATCCTGTCTCATCTG-CTTG-------CTAGAGAACA
i otoGar3.GL873742         C 0 I 6
e dasNov3.JH570741           494470 219 +   1532071 I
e proCoq1.NW_012152574v1     381265 1680 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=1554171.000000
s hg38.chr6_GL000254v2_alt   624497 409 +   4827813 ttatgctgagtgaaatgagccaggcacagaaagacaagtattgcatgatctcccttatatgtggaatctaaaaaggtcaaatctattgaggtagaaaatagaatggtggttaccagagtttgaggtaggagtggacaggggtggactggtcaaagggtacaaagtttcagttacacaggagaagtaacttctaatgatttattgtatagcatggtgactatagttaaaatgtattgtatattccaaaattgctaatggagtggattttaaatattttccccacaaagtaatgataagtatgtga---ggtggcagatatgttatttagcctgctgtactcattccaaaatatatacatgcattataacatcacgttataTATATACTGCAGACTAGAGTGGTGACAATTTGG
s panTro5.chr6             29596549 409 + 175400573 ttatgctgagtgaaatgagccaggcacagaaagacaagtattgcatgatctcccttatatgtggaatctaaaaaggtcaaatctattgaggtagagaatagaatggtggttaccagagtttgaggtaggagtggacaggggtggactggtcaaagggtacaaagtttcagttacacaggagaagtaacttctaatgatttattgcatagcatggtgactatagttaaaatgtattgtatattccaaaattgctaatggagtggattttaaatattttccccacaaagtaatgataagtatgtga---ggtggcagatatgttatttagcctgctgtactcattccaaaatatatacatgcattataacatcacgttataTATATACTGCAGACTAGAGTGGTGACAATTTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29834778 409 + 173848474 ttatgctgagtgaaatgagccaggcacagaaagacaagtattgcatgatctcccttatatgtggaatctaaaaaggtcaaatctattgaggtagagaatagaatggtggttaccagagtttgaggtaggagtggacaggggtggactcgtcaaagggtacaaagtttcagttacacaggagaagtaacttctaatgatttattgcatagcatggtgactatagttaaaatgtattgtatattccaaaattgctaatggagtggattttaaatattttccccacaaagtaatgataagtatgtga---ggtggcagatatgttatttagcctgctgtactcattccaaaatatatacatgcattataacatcacgttataTATATACTGCAGACTAGAGTGGTGACAATTTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5637591 409 +   6154872 ttatgctgagtgaaataagccaggcacagaaagacaagtattgcatgatctcccttatatgtggactctaaaaaggtcaaatctattgaggtagagaatagaatggtggttaccagagtttgaggtaggagtggacaggggtggactggtcaaagggtacaaagtttcagttacacaggagaagtaacttctaatgatttattgcatagcatggtgactatagttaaaatgtattgtatattccaaaattgctaatggagtggattttaaatattttccccacaaagtaatgataagtatgtga---ggtggcagatatgttatttagcctgctgtactcattccaaaatatatacatgcattataacatcacgttataTATATACTGCAGACTAGAGTGGTGACAATTTGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29865983 412 + 172585720 ttatgctgagtgaagtaagccaggcacagaaagacaaatactgcatgatctcccttatatgcggaatctaaaaaggtcaaatctgtagaggtagagagtagaatggtggttaccagaggctgaggtaggggtggacaggggcggactggccaaagggtacaaagtttcagttacacaggaggaataagttctagtgatttattgcacagcatggtgactacagttaaaatgtactgtatattccaaaattgctaatggagtggattttaaatattttccccacaaagtaatgataagtatgtgaggtggtggcagacatgctatttagcctgctgtaatcattccacaatatatacatgcattataacatcacattACATATATACTGCAGACAAGAGTGGTGACAATTTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29528956 412 - 170955103 ttatgctgagtgaagtaagccaggcacagaaagacaaatactgcatgatctcccttatatgcggaatctaaaaaggtcaaatctgtagaggtagagagtagaatggtggttaccagaggctgaggtaggggtggacaggggcggactggccaaagggtacaaagtttcagttacacaggaggaataagttctagtgatttattgcacagcatggtgactacagttaaaatgtactgtatattccaaaattgctaatggagtggattttaaatattttccccacaaagtaatgataagtatgtgaggtggtggcagacatgctatttagcctgctgtaatcattccacaatatatacatgcattataacatcacattACATATATACTGCAGACAAGAGTGGTGACAATTTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2515450 406 -   2996164 ttatgctgagtgaaataagccaggcacagaaagacaaatactgcataatctcccttatatgtggaatctaaaaaggtcaaatctgtagaggtagagagtagaatggtggttaccagaggttgaggtaggggtggacagtggtggactggtcaaagggtacaaagtttcagttacacaggaggaataagttctagtgatttattgcacagcatggtgactacagttaaaatgtattgtatattccaaaatt-ctaatggagtggattttaaatattttccccacaaagta---ataagtatgtgaggtggtggcagacatactatttagtctgctgtaatcattccgcaatatatacatgcattataacatcatgttACGCATATACTGCAGACA--AGTGGTGACAATTTGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     268061 408 +    766320 ttatgctgagtgaaataagccaagcacagaaagacaaatactgcatgatctcccttatatgtggaatctaaaaaggtcaaatctgtagaggtagagagtagaatggtggttaccagaggctgaggtaggggtggacaggggcgaactggtcaaagggtaccaagtttcagtt----aggaggaataagttctagtgatttattgcacagcagggtgactacagttaaaatgtattgtatattccaaaactgctaatggagtggattttaaatattttccccacaaagtaatgataagtatgtgaggtggtggcaaacatgctatttagcctgctgtaatcattccacaatatatacatgcattataacatcacattACATGTATACTGCAGACAAGAGTGGTGACAATTTGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28769990 404 -  71996105 ttatgctgagtgaaataagccaggcacagaaagacaaatactgcatgatctcccttatatgtggaatcttaaaaggtcaaatctgtagaggtagagagtagaatggtggttaccagaggttgaggtaggggtggacaggggtggactggtcaaagggtacaaagtttcagtt----aggaggaataagttctggtgatttattgcacagcatggtgactacagttaaaatgtattgtatattccaaaatt-ctaatggagtggattttaaatattttccccacaaagta---ataagtatgtgaggtggtggcagacatgctatttagtctgctgtaatcattccacaatatatacatgcattataacatcacattACATGTATACTGCATACAAGAGTGGTGACAATTTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     252313 408 -    352859 ttatgctgagtgaaataagccaggcacagaaagacaaatactgcatgatctcccttatatgtggaatctaaaaaggtcaaatctgtagaggtagagagtagaatggtggttaccagaggctgaggtaggggtggacaggggcgaactggtcaaagggtaccaagtttcagtt----aggaggaataagttctagtgatttattgcacagcagggtgactacagttaaaatgtattgtatattccaaaactgctaatggagtggattttaaatattttccccacaaagtaatgataagtatgtgaggtggtggcaaacatgctatttagcctgctgtaatcattccacaatatatacatgcattataacatcacattACATGTATACTGCAGACAAGAGTGGTGACAATTTGG
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570741           494470 219 +   1532071 I
e proCoq1.NW_012152574v1     381265 1680 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2014336   6 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=1022324.000000
s hg38.chr6_GL000254v2_alt   624906 251 +   4827813 TTGGATAGAAATAGAGGCATTTGAGAGATATTAGAATATACAGTGTTACAATTTTGGTATAAAATGACGAAGAAGGATAAATTAAGGATAGTAGTTataaccaacatatattaaatgcttattataacataaccattcaacaatcattgtattacccagttcacatgcccacaca----------------------cact------aaaaacgcac-------------a----cgcacacaatgaaagagacatattatgtccacattacaagtaaaaaattttaaaa---taagtt
s panTro5.chr6             29596958 251 + 175400573 TTGGATAGAAATAGAGGCATTTGAGAGATATTAGAATATACAGTGTTACAATTTTGGTATAAAATGACGAAGAAGGATAAATTAAGGATAGTAGTCataaccaacatatattaaatgcttattataacataaccattcaacaatcattgtattacccagttcacatgcccacaca----------------------cacc------aaaaacacac-------------a----cgcacacaatgaaagagacatattatgtccatattacaagtaaaaaattttaaaa---taagtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29835187 251 + 173848474 TTGGATAGAAATAGAGGCATTTGAGAGATATTAGAATATACAGTGTTACAATTTTGGTATAAAATGACGAAGAAGGATAAATTAAGGATAGTAGTCataaccaacatatattaaatgcttattataacataaccattcaacaatcattgtattacccagttcacatgcccacaca----------------------cacc------aaaaacacac-------------a----cgcacacaatgaaagagacatattatgtccatattacaagtaaaaaattttaaaa---taagtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5638000 251 +   6154872 TTGGATAGAAATAGAGGCATTTGAGAGATATTAGAATATACAGTGTTACAATTTTGGTATAAAATGACGAAGAAGGATAAATTAAGGATAGTAGTCataaccaacatatattaaatgcttattataacataaccattcaacaatcattatattacccagttcacatgcccacaca----------------------cacc------aaaaccacac-------------a----cgcacacaatgaaagagacatatcatgtccatattacaagtaaaaaattttaaaa---taagtt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29866395 255 + 172585720 TTGGATAAAAATGGAGGCATTTGAGAGATATTAGAATATATAGTGTTACAATTTTGGTATAAAGTGATGAAGAAGGATAAATTAGGGATTGTAGTCATAACCAACATATATTAAATTCTTATTATAAAATAACCATTCAACAATCATTATATCACCCAGTTcacacacccacaca----------------------cacc------aaacacacac-------------aaacccacacacaATGAAAGAGACAtatcatgctcatattacaagtaaaaaattttaaag---taagtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29529368 255 - 170955103 TTGGATAAAAATGGAGGCATTTGAGAGATATTAGAATATATAGTGTTACAATTTTGGTATAAAGTGATGAAGAAGGATAAATTAGGGATTGTAGTCATAACCAACATATATTAAATTCTTATTATAAAATAACCATTCAACAATCATTATATCACCCAGTTcacacacccacaca----------------------cacc------aaacacacac-------------aaacccacacacaATGAAAGAGACAtatcatgctcatattacaagtaaaaaattttaaag---taagtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2515856 255 -   2996164 TTGGATAAAAATGGAGGCATTTGAGAGATGTTAGAATATATAATGTTACAATTTTGGTATAAAGTGACGAAGAAGGATAAATTAGGGATTGTAGTCGTAACCAACATATATTAAATGCTTATTATAAAATAACCATTCAACAATCATTATATCACCCAGTTcacacacccacaca----------------------cacc------aaatacacac-------------aaacccacacacaATGAAAGAGACAtattatgtgcatattacaagtaaaaaatcttaaag---taagtt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     268469 255 +    766320 TTGGATAAAAATGGAGGCATTTGAGAGATATTAGAATATATAGTGTTACAATTTTGGTATAAAGTGACGAAGAAGGATAAATTAGGGATTGTAGTCATAACCAACATATATTAAATGTTTATTGTAAAATAACCATTCAACAATCATTATATCACCCAGTTcacacacccacaca----------------------cacc------aaatacacac-------------aaacccacacacaATGAAAGAGACAtatcatgcgcatattacaagtaaaaaattttaaag---taagtt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28770394 255 -  71996105 TTGGATAAAAATGGAGGCATTTGAGAGATCTTAGAATATATAGTGTTACAATTTTGGTATAAAGTGACGAAGAAGGATAAATTAGGGATTGTAGTCataaccaacatatattaaatgcttattataaaataactattcaacaatcattgtatcacccagttcacacacccacaca----------------------cacc------aaatgcacac-------------aaacccacacacaatgaaagagacatatcatgtgcatattacaagtaaaaaattttaaag---taagtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     252721 255 -    352859 TTGGATAAAAATGGAGGCATTTGAGAGATATCAGAATATATAGTGTTACAATTTTGGTATAAAGTGACGAAGAAGGATAAATTAGGGATTGTAGTCataaccaacatatattaaatgtttattgtaaaataaccattcaacaatcattatatcacccagttcacacacccacaca----------------------cacc------aaatacacac-------------aaacccacacacaatgaaagagacatatcatgcgcatattacaagtaaaaaattttaaag---taagtt
i manLeu1.NW_012099655v1   C 0 C 0
s dasNov3.JH570741           494689 289 +   1532071 TTGGAAAGAAATGGAGGCATTTGAGAGATTTTAGA------AGGGATTCAATTTTGTTATGACGTGATGGAATAGAGTGTATTGGGGAAAATAATCATAGGTGACATATATTGAATCCTTATAATGAAGTAGACTTTTTACATGCCTTGTGCAATTTGATTCTCACAAAAATACACTATGAGTTCAATTCCCTGTACCACCTCAAAAAAAAATTTACTGTCACCTTTAAGAAAAAAATaccctatgaaataagtatatcatgcccatattacaaataaaa---tttaaaaccttgcat-
i dasNov3.JH570741         I 219 C 0
e proCoq1.NW_012152574v1     381265 1680 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2014336   6 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=713663.000000
s hg38.chr6_GL000254v2_alt   625157 145 +   4827813 tcagagaaattaaataatttgcctaaagttactcagACTTGCAGTGGTGTTATTGGGTTTTACATTTCACTTTGTGGCCTAAACGAGTGCACTGTGCTGATCTAGATTCCTGGATTGAACAAGCA---GATGGCTGGGGGTGTCATTC
s panTro5.chr6             29597209 145 + 175400573 tcagagaaattaaataatttgcctaaagttactcagacttgcagtggtgatattgggTTTTACATTTCACTTTGTGGCCTAAACGAGTGCACTGTGCTGATCTAGATTCCTGGATTGAACAAGCA---GATGGCTGGGGGTGTCATTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29835438 145 + 173848474 tcagagaaattaaataatttgcctaaagttactcagacttgcagtggtgatattgggTTTTACATTTCACTTTGTGGCCTAAACGAGTGCACTGTGCTGATCTAGATTCCTGGATTGAACAAGCA---GATGGCTGGGGATGTCATTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5638251 145 +   6154872 tcagagaaattaaataatttgcctaaagttactcagACTTGCAGTGGTGATATTGGATTTTACATTTCACTTTCTGGCCTAAACGAGTGCACTGTGCTGATCTAGATTCCTGGATTGAACAAGCA---GATGGCTGGGGGTGTCATTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29866650 145 + 172585720 tcagagagattaaataatttgtctaaagttactcagACTTGCAATGGTGATATTGGGTTTTACATTTAACTTTGTGGCCTAAACGAGTTCACTGTGCTGATCTAGATTCCTGGATTGAACAAGCA---GATGGCTGGGGGTGTCATCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29529623 145 - 170955103 tcagagagattaaataatttgtctaaagttactcagACTTGCAATGGTGATATTGGGTTTTACATTTAACTTTGTGGCCTAAACGAGTTCACTGTGCTGATCTAGATTCCTGGATTGAACAAGCA---GATGGCTGGGGGTGTCATCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2516111 144 -   2996164 tcagagagattaaataatttgtctaaagttactcagACTTGCAATAGTAATATTGGGTTTTACATTTCACTTTGTGGCCTAAACGAGTTCACTGTGCTGATCTAG-TTCCTGGATTGAACAAGCA---GATGGCTGGGGGTGTCATCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     268724 145 +    766320 tcagagagattaaataatttgtctaaagttactcagACTTGCAATGGTGATATTGGGTTTTACATTTCACTTTGTGGCCTAAACGAGTTCACTGTGCTGATCTAGATTCCTGGATTGAACAAGCA---GATGGCTGGGGGTGTCATCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28770649 145 -  71996105 tcagagagattaaataatttgtctaaagttactcagACTTGCAATGGTGATATTGGGTTTTACATTTCACTTTGTGGCCTAAACGAGTTCACTGTGCTGATCTAGATTCCTGGATTGAACAAGCA---GATGGCTGGGGGTGTCACCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     252976 145 -    352859 tcagagagattaaataatttgtctaaagttactcagacttgcaatggtgatactgggtttTACATTTCACTTTGTGGCCTAAACGAGTTCACTGTGCTGATCTAGATTCCTGGATTGAACAAGCA---GATGGCTGGGGGTGTCATCC
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     382945 145 +    730504 tcaaagagattaaataatttgcctaaaatgactcagattcgaaatggtgacattgggtttcacatttcagtttgtggcctttctgagtgcactgtgctgaactacCTTCCCGGAGTGAACAAGCA---GACGGTTGGTGGAGTCATTC
i proCoq1.NW_012152574v1   I 1680 C 0
s dasNov3.JH570741           494978 132 +   1532071 ttggagagattagataatttgcctaaTACTCCTCAGA-TTGGAATGAGGATAT----TTTTATCCC-----------CCTTAAAGAGCATGCTGTACTGAccaacgttcttggtctgcacacccacctgatgaataatggagtcattc
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2014336   6 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=89398.000000
s hg38.chr6_GL000254v2_alt   625302 20 +   4827813 TCTGAAATGAAAGCAGGAAA
s panTro5.chr6             29597354 20 + 175400573 TCTGAAATGAAAGCAGGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29835583 20 + 173848474 TCTGAAATGAAAGCAGGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5638396 20 +   6154872 TCTGAAATGAAAGCAGGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29866795 20 + 172585720 TCTGAAATGAAAGTGGGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29529768 20 - 170955103 TCTGAAATGAAAGTGGGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2516255 20 -   2996164 TCTGAAATGAAAGCACGAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     268869 20 +    766320 TCTGAAATGAAAGCGGGAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28770794 20 -  71996105 TTTGAAATGAAAGCGGGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     253121 20 -    352859 TCTGAAATGAAAGCGGGAAA
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     383090 20 +    730504 TCTGCAATAAAAGCAGAAAA
i proCoq1.NW_012152574v1   C 0 I 277
e dasNov3.JH570741           495110  0 +   1532071 C
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2014336  6 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=7277805.000000
s hg38.chr6_GL000254v2_alt   625322 1863 +   4827813 TTGGCACTTGTTGGCAAATctggcaagatggctgaataggaacagctctgctctgcagctcccagtgagaccaatgcagaaggcaggtgatttctgcatttccaactgaggtaccagttaggtaactggttaggaagc----aggtgcagcacctggagggcaggcagaagcatggtgtggcatcgccccactcgggaagtgcaaggagcttccccagccaagggaagctgtgagggactgtgctattca-cccacatactacacctttcccacggtttttgcaatccgcagaccaggagattctctcatgtgcctacaccaccaggggcctgggtttcaagcacaaaactgggtggctgtttgggcagacactgagccagctgcaggag-tttttttcataccccagtggcacctggaacatcaacagacagaactgttcactcccctggaaagggggctgaagccaagtgctctcactcagcgggtcccactcctatggagcccagcaagctaaggaccactggctt--aaaattctcactgccagcacagcagtctgaagtcgaccctggatgatcgagcttgttgtggggaggggcatccaccattagtgaggcttgagtaggcagttttcccctgacagtgctaaggaggcctggaagtttggactgggtggaactcaacacagcgtggcaaagtggctgtggccagactgcttctctagattcctcctcactggggagggcatctctgaaagaaaggcagcagtcccagtcaggggcttagagataaaactcccatcttcctgggacagagcacctgggggaaggggcagctgtgggcgcagcttcatcagacttaagcattcctgcctgccggctctgaagagaacagtggattctgacaaggagggttctcccagcacagcgctcaagctctgctaagggacagactgcctctgccagtgaatccctgaccccagtgcctactgactgagagagactccccaacaggggttgacagacacctcatagaggagag-tccagctggcactgggct----tccctttgggatgaagcttccagaggaagaagcaggcagtaatagttgccgttctgcagcctccaccggtgatactcaggcaaatagggtctggagtgaaccttgagcaaactgcagcagacctgcagaagaggggcctgactggtagaagaaaaactaacaaacagaaagcaataacatcaacatcaacaaaaaggacccccacacaaaatcccatccaaaggtcatcaacctcaaagatcaaaggtagataaatccacgaagatgaggaaaaaccagcacaaaaatgctgaaaattccaaaaacattcttctagagaaaaatgtcttttctccaaatgattgcaactcctctccagcaagtgcacaaaactgggcagagaatgagtttgatgaattcacagaagtaggcttcagaaggtgggaaataacaaactccattgagctaaaggagcatgttctaacccaatgcaatgaagctaagaaatttgacaaaagattacaggaactgctaactagaagtttagagaaaaacataagtgacttgatggagctgaaaaacacatcatgagaacttcatgaagcatacacaagtatcaatagctgaattgatcaaccagaagaaaggatatcagagattgaagatcaacttactaaaataaggtgtgaagacaatattagagaaaaaagagggaaaaggaaggaaaaaagtctccaagaaatatgggactatgtgaaaagaccaaacatgtgattgggtggtatacttgaaagtaacatggagaatgagaccaagttggaaaacacacttc
s panTro5.chr6             29597374 1865 + 175400573 TTGGCACTTGTTGGCAAATctggcaagatggctgaataggaacagctctgctctgcagctcccagtgagaccaatgcagaaggcaggagatttctgcatttccaactgaggtaccagttaggtaactggttaggaagc----aggtgcagcacctggagggcaggcagaagcatggtgcggcatcgcctcactcgggaagtgcaaggagactccccagccaagggaagctgtgagggactgtgctattca-cccacatactacacctttcccacggtttttgcaatccgcaaaccaggagattctctcatgtgcctacaccaccaggggcctgggtttcaagcacaaaactgggtggctgtttgggcagacactgagccggctgcaggagttttttttcataccccagtggcacctggaacatcaacagacagaactgttcactcccctggaaagggggctgaagccaagtgctctcactcagcgggtcccactcccatggagcccagcaagctaaggaccactggctt--aaaattctcactgccagcccagcagtctgaagtcgaccctggatgatcgagcttgttgtggggaggggcatccaccattagtgaggcttgagtaggcagttttcccctgacagtgctaaggaggcctggaagtttggactgggtggaactcaacacagcgtagcaaagtggctgtggccagactgcttctctagattcctcctcactggggagggcatctctgaaagaaaggcagcagtcccagtcaggggcttagaggtaaaactcccatcttcctgggacagagcacctgggggaaggggcagctgtgggcgcagcttcatcagacttaagcattcctgcctgccggctctgaagagaacagtggatcctgacaaggagggttctcccagcacagcgctcaagctctgctaagggacagactgcctctgccagtgaatccctgaccccagtgcctactgactgagagagactccccaacaggggttgacagacacctcatagaggagagctccagctggcactgggct----tccctttgggatgaagcttccagaggaagaagcaggcagtaatagttgccgttctgcagcctccaccggtgatactcaggcaaatagggtctggagtgaaccttgagcaaactgcagcagacctgcagaagaggggcctgactggtagaagaaaaactaacaaacagagagcaataacatcaacatcaacaaaaaggacccccacacaaaatcccatccaaaggtcatcaacctcaaagatcaaaggtagataaatccacgaagatgaggaaaaaccagcacaaaaatgctgaaaattccaaaaacattcttctagagaaaaatgtcttttctccaaatgattgcaactcctctccagcaagtgcacaaaactgggcagagaatgagtttgatgaattcacagaagtatgcttcagaaggtgggaaataacaaactccattgagctaaaggagcatgttctaacccaatgcaatgaagctaagaaatttgacaaaagattacaggaactgctaactagaagtttagagaaaaacataagtgacctgatggagctgaaaaacacatcatgagaacttcatgaagcatacataagtatcaatagctgaattgatcaaccagaagaaaggatatcagagattgaagatcaacttactaaaataaggtgtgaagacaatattagagaaaaaagagggaaaaggaaggaaaaaagtctccaagaaatatgggactatgtgaaaagaccaaacatgtgattgggtggtatacctgaaagtaacatggagaatgagaccaagttggaaaacacacttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29835603 1864 + 173848474 TTGGCACTTGTTGGCAAATctggcaagatggctgaataggaacagctctgctctgcagctcccagtgagaccaatgcagaaggcaggagatttctgcatttccaactgaggtaccagttaggtaactggttaggaagc----aggtgcagcacctggagggcaggcagaagcatggtgcggcatcgcctcactcgggaagtgcaaggagcctccccagccaagggaagctgtgagggactgtgctattca-cccacatactacacctttcccacggtttttgcaatccgcagaccaggagattctctcacgtgcctacaccaccaggggcctgggtttcaagcacaaaactgggtggctgtttgggcagacactgagccggctgcaggagttttttttcataccccagtggcacctggaacatcaacagacacaactgttcactcccctggaaagggggctgaagccaagtgctctcactcagcgggtcccactcccatggagcccagcaagctaaggaccactggctt--aaaattctcactgccagcacagcagtctgaagtcgaccctggatgatcgagcttgttgtggggaggggcatccaccattagtgaggcttgagtaggcagttttcccctgacagtgctaaggaggcctggaagtttggactgggtggaactcaacacagcgtagcaaagtggctgtggccagactgcttctctagattcctcctcactggggagggcatctctgaaagaaaggcagcagtcccagtcaggggcttagaggtaaaactcccatcttcctgggacagagcacctgggggaaggggcagctgtgggcgcagcttcatcagacttaagcattcctgcccgccggctctgaagagaacagtggatcctgacaaggagggttctcccagcacagcgctcaagctctgctaagggacagactgcctctgccagtgaatccctgaccccagtgcctactgactgagagagactccccaacaggggttgacagacacctcatagaggagagctccagctggcaatgggct----tccctttgggatgaagcttccagaggaagaagcaggcagtaatagttgctgttctgcagcctccaccggtgatactcaggcaaatagggtctggagtgaaccttgagcaaactgcagcagacctgcagaagaggggcctgactggtagaagaaaaaataacaaacagagagcaataacatcaacatcaacaaaaaggacccccacacaaaatcccatccaaaggtcatcaacctcaaagatcaaaggtagataaatccacgaagatgaggaaaaaccagcacgaaaatgctgaaaattccaaaaacattcgtctagagaaaaatgtcttttctccaaatgattgcaactcctctccagcaagtgcacaaaactgggcagagaatgagtttgatgaattcacagaagtaggcttcagaaggtgggaaataacaaactccattgagctaaaggagcatgttctaacccaatgcaatgaagctaagaaatttgacaaaagattacaggaactgctaactagaagtttagagaaaaacataagtgacctgatggagctgaaaaacacatcatgagaacttcatgaagcatacataagtatcaatagctgaattgatcaaccagaagaaaggatatcagagattgaagatcaacttactaaaataaggtgtgaagacaatattagag-aaaaagagggaaaaggaaggaaaaaagtctccaagaaatatgggactatgtgaaaagaccaaacatgtgattgggtggtatacctgaaagtaacatggagaatgagaccaagttggaaaacacacttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5638416 1864 +   6154872 TTGGCACTTGTTGGCAAATctggcaagacggctgaataggaacagctctgctctgcagctcccagtgagaccaatgcagaaggcaggtgatttgtgcatttccaactgaggtaccagttaggtaactggttaggaagc----aggtgcagcccctggagggcaggcagaagcatggtgcggcatcgcctcactcgggaagtgcaaggagcttccccagccaagggaagctgtgagggactgtgctattca-cccacatactacacctttcccatggtttttgcaatccgccgaccaggagattctctcatgtgcctacaccaccaggggcctgggtttcaagcacaaaactgggtggctgtttgggcagacactgagccagctgcaggagttttttttcataccccagtggcacctggaacatcaacagacagaactgttcactcccctggaaagggggctgaagccaagtgctctcactcagcgggtcccactcccatggagcccagcaagctaaggaccactggctt--aaaattctcactgccagcacagcagtctgaagtcgaccctggatgatggagcttgttgtggggaggggcatccaccattagtgaggcttgagtaggcagttttcccctgacagtgctaaggaggccttgaagtttggactgggtagaactcaacacagcgtggcaaagtggctgtggccagactgcttctctagattcctcctcactggggagggcatctctgaaagaaaggcagcagtcccagtca-gggcttagagataaaactcccatcttcctgggacagagcacctgggggaaggggcagctgtgggcgcagcttcatcagacttaagcattcctgcctgccggctctgaagagaacagtggatcctgacaaggagggttctcccagcacagcgcttaagctctgctaagggacagactgcctctgccagtgaatccctgaccccagtgcctactgactgagagagactccccaacaggggttgacagacacctcatagaggagagctccagctggcactgggct----tccctttgggatgaagcttccagaggaagaagcaggcagtaataattgccgttctgcagcctccactggtgatactcaggcaaatagggtctggagtgaaccttgagcaaactgcagcagacctgcagaagaggggcctgactggtagaagaaaaactaacaaacagaaagcaataacatcaacatcaacaaaaaggacccccacacaaaatcccatcccaaggtcatcaacctcaaagatcaaaggtagatatatccatgaagatgaggaaaaaccagcacgaaaatgctgaagattccaaaaacattcttctagagaaaaatgtcttttctccaaatgattgcaactcctctccagcaagtgcacaaaactgggcagagaatgagtttgattaattcacagaagtaggcttcagaaggtgggaaataacaaactccattgagctaaaggagcatgttctaacccaatgcaatgaagctaagaaatttgacaaaagattataggaactgctaactagaagtttagagaaaaacataagtgacctgatggagctgaaaaacacagcatgagaacttcatgaagcatacacaagtatcaatagttgaattgatcaaccagaagaaagaatatcagagattgaagatcaacttactaaaataaggtgtgaagacaatattagagaaaaaagagggaaaaggaaggaaaaaagtctctaagaaatatgggactatgtgaaaagaccaaacctgtgattgggtggtatacctgaaagtaacatggagaatgagaccaagttggaaaacacacttc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29866815 1871 + 172585720 TTGGCACTTGGTGGCGAATctggcaagatggcccaataggaagaattctgctctgcagctcccagtgagaccaatgcagaaggccggtgatttctgtatttccaaccgaggtaccagtttggcacatggttaggaagcaggtaggtgcagcccatggagggcaggcagaagcatggtggggcatcgcctcacttgggaagtgcaaggagcttcaccagccaagggaagctgtgagggactgtgctattcagcctagatactacacctttcccacagtttttgcaatctgcagaccaggagattc-cccatgtgcctacaacaccagggacctgggtttcaagcacaaaactgggtggctgtttgggcagacaccgagccagctgcaggagttttttttcataccccagtggcacctggaacatcaacagacagaactgttcactcctgtggaaagggggctgaagccaagtggtctcactcagccagtcccactcccatggagcccagcaagctaagaatcactgactt--aaaattctcactgccagcacggcagtctgaagttgaccttggctgattgagcttgtt-tgggcaggggcatccaccattactgaggcttgagtaggcagctttcccctgacagtgctaaggaggcctggaagtttggactgggtggaactcaacaccgcatggcaaagtggctgtggctagactgcttctttagattcctcctcattgggaagggcatctctgaaagaaaggcagcagtcccagtcaagggcttatagataaaattcccgtcttcctgggacagagtacctggggaaaggggcagctgtgggcacagcttcattggacttaaacattcctgcctgccggctctggagagagcagtggatcctgacaaggaggtttctcccagcat-gcactcaagctctgctgagggacagactgcctccgcaagtgaatccctgaccccagtgcctactgactgagagagacttcccaacaggggttgacagacatctcatagaggagagctccagctggcactgggctggtgcccctttgggatgaagcttccagaggaagaagcaggcagtaatagttgctgttctgcagcctccactggtgatactcaggcaaatagggtctggagtggacctccagcaaactgcagcagacctgtacaagaggggcccgactggtagaagaaaaactattaaatagaaagcaataacatcaatatcaacaaaaaggacccccacacaaaatcccatccaaaggtcatcaacctcaaagatcaaaggtagataaatccatgaagatgaggaaaaaccagcacaaaaatgctgaaaattccaaaaacatccttctggagaagaatgccttttctccaaatgatcacaactcctctccagcaagggcataaaactgggcagagaatgagtttgatgaattaacagaagtaggcttccgaagttgggtaacaacaagctccactgagctaaaggagcatgttctaacctaatgcaatgaagctaagaacactgacaaaagattacaggaactgctaactagaagtttagagaaaaacataagtgacctgatggagctgaaaaacacagcatgagaacttcatgaagcatacacaagtatcaatagccaaattgatcaagcagaagaaaggatatcagagattgaagatcaacttactaaaataaggtgtgaagacaatatttgagaaaaaagagggaaaaggaaggaaaaaaatctccaagaaatatgggactatgtgaaaagaccaaacctatgattgagtggtgtacctgaaagtaacacggagaatggaaccaagttggaaaacacacttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29529788 1871 - 170955103 TTGGCACTTGGTGGCGAATctggcaagatggcccaataggaagaattctgctctgcagctcccagtgagaccaatgcagaaggccggtgatttctgtatttccaaccgaggtaccagtttggcacatggttaggaagcaggtaggtgcagcccatggagggcaggcagaagcatggtggggcatcgcctcactcgggaagtgcaaggagcttcaccagccaagggaagctgtgagggactgtgctattcagcctagatactacacctttcccacagtttttgcaatctgcagaccaggagattc-cccatgtgcctacaacaccagggacctgggtttcaagcacaaaactgggtggctgtttgggcagacaccgagccagctgcaggagttttttttcataccccagtggcacctggaacatcaacagacagaactgttcactcctgtggaaagggggctgaagccaagtggtctcactcagccagtcccactcccatggagcccagcaagctaagaatcactgactt--aaaattctcactgccagcacggcagtctgaagttgaccttggctgattgagcttgtt-tgggcaggggcatccaccattactgaggcttgagtaggcagctttcccctgacagtgctaaggaggcctggaagtttggactgggtggaactcaacaccgcatggcaaagtggctgtggctagactgcttctttagattcctcctcattgggaagggcatctctgaaagaaaggcagcagtcccagtcaagggcttatagataaaattcccgtcttcctgggacagagtacctggggaaaggggcagctgtgggcacagcttcattggactgaaacattcctgcctgccggctctggagagagcagtggatcctgacaaggaggtttctcccagcat-gcactcaagctctgctgagggacagactgcctccgcaagtgaatccctgaccccagtgcctactgactgagagagacttcccaacaggggttgacagacatctcatagaggagagctccagctggcactgggctggtgcccctttgggatgaagcttccagaggaagaagcaggcagtaatagttgctgttctgcagcctccactggtgatactcaggcaaatagggtctggagtggacctccagcaaactgcagcagacctgtacaagaggggcccgactggtagaagaaaaactattaaatagaaagcaataacatcaatatcaacaaaaaggacccccacacaaaatcccatccaaaggtcatcaacctcaaagatcaaaggtagataaatccatgaagatgaggaaaaaccagcacaaaaatgctgaaaattccaaaaacatccttccggagaagaatgccttttctccaaatgatcgcaactcctctccagcaagggcacaaaactgggcagagaatgagtttgatgaattaacagaagtaggcttccgaagttgggtaacaacaagctccactgagctaaaggagcatgttctaacctaatgcaatgaagctaagaacactgacaaaagattacaggaactgctaactagaagtttagagaaaaacataagtgacctgatggagctgaaaaacacagcatgagaacttcatgaagcatacacaagtatcaatagccaaattgatcaagcagaagaaaggctatcagagattgaagatcaacttactaaaataaggtgtgaagacaatatttgagaaaaaagagggaaaaggaaggaaaaaaatctccaagaaatatgggactatgtgaaaagaccaaacctatgattgagtggtgtacctgaaagtaacatggagaatggaaccaagttggaaaacacacttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2516275 1869 -   2996164 TTGGCACTTGGTGGCGAATctggcaagatggcccaataggaagaattctgctctgcagctcccagtgagaccaatgcagaaggccggtgatttctgtatttccaactgaggtaccagtttggcacatggttaggaagc----aggtgcagcccatagagggcaggcagaagcatggtggggcatcgcctcactcgggaagtgcaaggatcttcaccagccaagggaagctgtgagggactgtgctattcagcctagatactacacttttcccacagtttttgcaatctgcagaccaggagattc-cccacgtgcctacaccacgagggacctgcgtttcaagcacaaaactgggtggctgtttgggcagatactgagccagctgcaggagttttttttcataccccagtggtacctgtaacatcaacagacagaactgttcactcccatggaaaggcagctgaagccaagtggtctcactcagccagtcccactcccatggagcccagcaagctaagaatcactggcttaaaaaattctcactgccagcacggcagtctgaagttgaccttggatgatcgagcttgtt-tgggcaggggcatccaccattactgaggcttgagtaggcagttttcccctgacagtgctaaggaggcctggaagtttggactgggtggaactcagcaccgcatggcaaagtggctgtggccagactgcttctttagattcctcctcactggggagggcatctctgaaagaaaggcagcagtcccagtcaagggcttatagataaaactcctatcttcctggtacagagtacccggggaaaggggcggctgtgggcacagcttcattggacttaaacattcctgcctgccggctctgaagagagcagtggatcctgacaaggaggtttctcccagcacagcactcaagctctgctgagggacagactgcctccgcaagtgaatccctgaccccagtgcctactgactgagagagacttcccaacaggggttgacagacatctcatagaggagagctccagctggcactgggctggtgcccctttgggatgaagcttccagaggaagaagcaggcagtaatagttgctgttctgcagcctccactggtgatactcaggcaaatagggtctggagtggacctccagcaaactgcagcagacctgcagaagaggggcccgactggtagaagaaaaactattaaatagaaagcaataacatcaacatcaacaaaaaggacccccacacaaaatcccacccaaaggtcatcaacctcaaagatcaaaggtagataaatccatgaagatgaggaaaaaccagcacaaaaatgctgaaaattccaaaaacatccttccggagaagaatgccttttctccaaatgatcgcaactcctctccagcaagggcacaaaactgggcagagaatgagtttgatgaattaacagaagtaggcttccgacggtgagtaacaacaagctccactgagctaaaggagcatgttctaacctaatgcaatgaagctaagaacattgacaaaagattacaggaactgctaactagaagtttagagaaaaacataagtgacctgatggagctgaaaaacacagcatgagaacttcatgaagcatacacaagtatcaatagccaaattgatcaagcagaagaaaggatatcagagattgaagatcaacttactaaactaaggtgtgaagacaatattagagaaaaaagagggaaaaggaagg-aaaaaatctccaagaaatatgggactatgtgaaaagaccaaacctatgattgagtggtgtacctgaaagtaacatggagaatggaaccaagttggaaaacacacttc
i macNem1.NW_012011356v1   C 0 I 2732
s cerAty1.NW_012002711v1     268889 1866 +    766320 TTGGCACTTGGTGGCAAATCTGGcaagatggcccaataggaagaattctgctctgcagctcccagtgagaccaatgcagaaggctggtgatttctgtatttccagctgaggtaccagtttggcacatggttaggaagc----aggtgcagtccatggagggcaggcagaagcatggtggggcatcgcctcactcgggaagtgcaaggagcttcaccagccaagggaagctgtgagggactgtgctattcagcctagatactacacctttcccacagtttttgcaatctgcagaccaggagattc-cccatgtgcctacaccaccagggacctgggtttcaagcacaaaactgggtggctgtttgggcagatactgagccagctgcaggagttttttttcataccccagtggcacctgtaacatcaacagacagaactgttcactcccatggaaaggcggctgaagccaagtggtcccactcagccagtcccactcccatggagcccagcaagctaagaatcactggctt--aaaattctcactgccaatacagcagtctgaagttgaccttggatgatcgagcttgtt-tggggcggggcatgcaccattactgaggtttgagtaggcagttttcccctgacagtgctaaggaggcctggaagtttggactgggtggaactcaacaccgcatggcaaagtggctgtggccagactgcttctttagattcctcctcactggggagggcatctctgaaagaaaggcagcagtcccagtcaagggcttatagataaaactcctatcttcctggggcagagtacctggggaaaggagcggctgtgggcacagcttcattggacttaaacattcctgcctgccggctctgaacagagcagtggatcctgacaaggaggtttctcccagcacagcactcaagctctgctgagggacagactgcctccgcaagtgaatccctgatcccagtgcctactgactgagagagacttcccaacaggggttgacagacatctcatagaggagagctccaactggcactgggctggtgcccctttgggatgaagcttccagaggaagaagca-gcagtaatagttgctgttctgcagcctccactggtgatactcaggcaaatagggtttggagtggacgtccagcaaactgcagcagacctgcagaagaggagcccaactggtagaagaaaaactgttaaatagaaagcaataacatctacatcaacaaaaaggacccccacacaaaatcccacccaaaggtcatcaacctcaaagatcaaaggtagataaatccatgaagatgaggaaaaaccagcacaaaaatgctgaaaattccaaaaacatccttctggagaagaataccttttctccaaatgatcgcaacccttctccagcaagggcacaaaactgggcagagaatgagtttgatgaattaacagaagtaggcttccgacagtgagtaacaacaagctccactgagctaaaggagcatgttctaacctaatgcaatgaagctaagaacattgacaaaagattacaggaattgctaactagaagtttagagaaaaacataagtgacctgatggagctgaaaaacacagcatgagaacttcatgaagcatacacaagtatcaatagccaaattgatcaagcagaggaaaggatatcagagattgaagatcaacttactaaactaagatgtgaagacaatattagagaaaaaagagggaaaaggaagg-aaaaaatctccaagaaatatgggactatgtgaaaagaccaaacctatgattgagtggtgtacctgaaagtaacatggagaatggaaccaagttggaaaacacacttc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28770814 1866 -  71996105 TTGGCACTTGGTGGCTAATctggcaagatggcccaataggaagaattctgctctgcagctcccagtgagaccaatgcagaaggcgggtgatttctgtatttccaactgaggtaccagtttggtacatggttaggaagc----aagtgcagcccatagagggcaggcagaagcatggtggggcatcgcctcactcgggaagtgcaaggagctttaccagccaagggaagctgtgagggattgtgctattcagcctagatactacacctttcccacggtttttgcaatctgcagaccaggagattc-cccatgtgcctataccaccagggacctgggtttcaagcacaaaactgggtggccgtttgggcagattctgagccagctgcagt-tttttttttcataccctagtggcacctggaacatcaacagacagaactgttaactcccgtggaaagggggctaaagccaagcggtctcactcagccagtcccactcccatggagcccagcaagctaagaatcactggctt--aaaattctcactgccagcacggcagtctgaagttgaccttggatgatcgagcttgtt-tgggcaggggcatccaccattactgaggcttgagtaggcagttttcccctgacattgctaaggaggcctggaagtttggactgggtggaactcaacaccgcatggcaaagtggctgtggccagactgcttctttagattcctcctcactgggaagggcatctctgaaagaaaggcaggagtcccagtcaagggcttatagataaaactcccatcttcctgggacagagtacctggggaaaggggcggctgagggcacagcttcattggacttaaacattcctgcctgcagcctctgaagagagcagtggatcctgacaaggaggtttctcccagcacagcactcaagctctgctgagggacaggctgcctccgcaagtgaatccctgaccccagtgcctactgactgacagagacttcccaacaggggttgacagacatctcatagaggagagctccagctggcactgggctggtgcccctttgggatgaagcttccagaggaagaagcaggcagtaatagttgctgttctgcagcctccactggtgatactcaggcaaatagggtctggagtggacttccagcaaactgcagcagacctgcagaagaggggcccaactggtagaagaaaaactattaaatagaaagcaataacatcaatatcaacaaaaagaacccccacacaaaatcccatccaacggtcatcaacctcaaagatcaaaggtagataaatccatgaggatgaggaaaaaccaccacaaaaatgctgaaaattccaaaaacatccttctggagaagaatgccttttctccaaatgatcgcaactcctctccagtaagggcacaaaactgggcagagaatgagtttgatgaattaacagaagtaggcttccaaaggtgagtaacaacaagctccactgagctaaaggagcatgttctaacctaatgcaatgaagctaagaacattgacaaaagattacaggaactgctaactagaagtttagagaaaaacataagtgacctgatggagctgaaaaacacagcatgagaacttcatgaagcatacacaagtatcaatagccaaattgatcaagcagaagaaaggatgtcagagattgaagatcaacttactaaaataaggtgtgaagacaatattagagaaaaaagagggaaaaggaagg-aaaaaatctccaagaaatatgggactatgtgaaaagaccaaacctatgattgagtggtgtacctgaaagtaacacggagaatggaaccaagttggaaaacacacttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     253141 1867 -    352859 TTGGCACTTGGTGGCAAATCTGGcaagatggcccaataggaagaattctgctctgcagctcccagtgagaccaatgcagaaggccggtgatttctgtatttccagctgaggtaccagtttggcacatggttaggaagc----aggtgcagtccatggagggcaggcagaagcatggtggggcatcgcctcactcgggaagtgcaaggagcttcaccagccaagggaagctgtgagggactgtgctattcagcctagatactacacctttcccacagtttttgcaatctgcagaccaggagattc-cccatgtgcctacaccaccagggacctgggtttcaagcacaaaactgggtggctgtttgggcagatactgagccagctgcaggagttttttttcataccccagtggcacctgtaacatcaacagacagaactgttcactcccatggaaaggcggctgaagccaagtggtcccactcagccagtcccactcccatggagcccagcaagctaagaatcactggctt--aaaattcttactgccagtacagcagtctgaagttgaccttggatgatcgagcttgtt-tggggcggggcatccaccattactgaggtttgagtaggcagttttcccctgacagtgctaaggaggcctggaagtttggactgggtggaactcaacatcgcatggcaaagtggttgtggccagactgcttctttagattcctcctcactggggagggcatctctgaaagaaaggcagcagtcccagtcaagggcttatagataaaactcctatcttcctggggcagagtacctggggaaaggagcggctgtgggcacagcttcattggacttaaacattcctgcctgccggctctgaagagagcagtggatcctgacaaggaggtttctcccagcacagcactcaagctctgctaagggacagactgcctccgcaagtgaatccctgatcccagtgcctactgactgagagagacttcccaacaggggttgacagacatctcatagaggagagctccaactggcactgggctggtgcccctttgggatgaagcttccagaggaagaagcaggcagtaatagttgctgttctgcagcctccactggtgatactcaggcaaatagggtttggagtggacgtccagcaaactgcagcagacctgcagaagaggagcccaactggtagaagaaaaactattaaatagaaagcaataacatctacatcaacaaaaaggacccccacacaaaatcccacccaaaggtcatcaacctcaaagatcaaaggtagataaatccatgaagatgaggaaaaaccagcacaaaaatgctgaaaattccaaaaacatccttctggagaagaataccttttctccaaatgatcgcaacccttctccagcaaggacacaaaactgggcagagaatgagtttgatgaattaacagaagtaggcttccgacagtgagtaacaacaagctccactgagctaaaggagcatgttctaacctaatgcaatgaagctaagaacattgacaaaagattacaggaattgctaactagaagtttagagaaaaacataagtgacctgatggagctgaaaaacacagcatgagaacttcatgaagcatacacaagtatcaatagccaaattgatcaagcagaggaaaggatatcagagattgaagatcaacttactaaactaagatgtgaagacaatattagagaaaaaagagggaaaaggaagg-aaaaaatctccaagaaatatgggactatgtgaaaagaccaaacctatgattgagtggtgtacctgaaagtaacatggagaatggaaccaagttggaaaacacacttc
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570741           495110    0 +   1532071 C
e proCoq1.NW_012152574v1     383110  277 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2014336    6 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=2816298.000000
s hg38.chr6_GL000254v2_alt   627185 934 +   4827813 aaaatattatccaggagaccttccccaacctagcaagacaggtcaacatccaaattcaggaaatacagagaacaccactaagatactcctcgagaagggcaaccccaagacacataatcatcagattatccaaggtcgaaatgaaagaaaaaatgttaaggacagtcagagagaaaggtcaggttacctacaaagggaagcccatcagactaacagtggatctctccgcagaaaacccacaagccagaagagagtggggaccaatattcaacattcttaaaaaaaaagaattttcaactcagaattttgcatacagccaaactaagcttcataagtgcaggagaaataaaatcatttacagacaagcaaatgctgagggattatgtcaccaccaggcctgctttacaagagctcctaaaggaagcactaaacagggaaaggaaaaag-tagtaccagccactgcaaaaacacaccgtaatataaaaaccaaagacactatgaagaaactgcatcaactaatgttcaaagtaaccaactagcatcatgatgaatggatcaaattcacac--taacaatattaatcttaaatgtaaatgggctgaatgtcccaattaaaagacacagactggcaaattgaataaagtgtcaagacccatcagtgtgcagtattcaggagacccatctcatgtgcaaagacacacataggctcaaaacaaagggacagagaaatatttaccaagcaaatgg-aaagag-aaaaaaaaa--gcaggggttgcaatcctagtctctgataaaacagaatttaaaccgacagagatcaaaaaagacaaagaaaggcat--tacacaatggtaaagggatcaatgcaacaagaagagctaactatcctaaatacatatgcacccaataaaggagcacccagattcataaaacaagttctt
s panTro5.chr6             29599239 934 + 175400573 aaaatattatccaggagaccttccccaacctagcaagacaggtcaacatccaaattcaggaaatacagagaacaccactaagatactcctcgagaagggcaaccccaagacacataatcatcaggttatccaaggtcaaaatgaaagaaaaaatgttacgggcagtcagagagaaaggtcaggttacctacaaagggaagcccatcagactaacagtggatctctccgcagaaaacccacaagccagaagagagtggggaccaatattcaacattcttaaaaaaaaagaattttcaactcagaattttgcatacagccaaactaagcttcataagtgcaggagaaataaaatcatttacagacaagcaaatgctgagggattatgtcaccaccaggcctgctttacaagagctcctaaaggaagcactaaacagggaaaggaaaaag-tagtaccagccactgcaaaaacacaccataatataaaaaccaaagacactatgaagaaactgcatcaactaatgttcaaagtaaccaactagcatcatgatgaatggatcaaattcacac--taacaatattaatcttaaatgtaaatgggctaaatgtcccaattaaaagacacagactggcaaattgaataaagtgtcaagacccatcagtgtgcagtattcaggagacccatctcatgtgcaaagacacacataggctcaaaacaaagggacagagaaatatttaccaagcaaatgg-aaagag-aaaaaaaaa--gcaggggttgcaatcctagtctctgataaaacagaatttaaaccgacagagatcaaaaaagacaaagaaaggcat--tacacgatggtaaagggatcaatgcaacaagaagagctaactatcctaaatacatatgcacccaataaaggagcacccagattcataaaacaagttctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29837467 933 + 173848474 aaaatattatccaggagaccttccccaacctagcaagacaggtcaacatccaaattcaggaaatacagagaacaccactaagatactcctcgagaagggcaaccccaagacacataatcatcaggttatccaaggtcgaaatgaaagaaaaaatgttacgggcagtcagagagaaaggtcaggttacctacaaagggaagcccatcagactaacagtggatctctccgcagaaaacccacaagccagaagagagtggggaccaatattcaacattctt-aaaaaaaagaattttcaactcagaattttgcatacagccaaactaagcttcataagtgcaggagaaataaaatcatttacagacaagcaaatgctgagggattatgtcaccaccaggcctgctttacaagagctcctaaaggaagcactaaacagggaaaggaaaaag-tagtaccagccactgcgaaaacacaccataatataaaaaccaaagacactatgaagaaactgcatcaactaatgttcaaagtaaccaactagcatcatgatgaatggatcaaattcacac--taacaatattaatcttaaatgtaaatgggctaaatgtcccaattaaaagacacagactggcaaattgaataaagtgtcaagacccatcagtgtgcagtattcaggagacccatctcatgtgcaaagacacacataggctcaaaacaaagggacagagaaatatttaccaagcaaatgg-aaagag-aaaaaaaaa--gcaggggttgcaatcctagtctctgataaaacagaatttaaaccgacagagatcaaaaaagacaaagaaaggcat--tacacgatggtaaagggatcaatgcaacaagaagagctaactatcctaaatacatatgcacccaataaaggagcacccagattcataaaacaagttctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5640280 935 +   6154872 aaaatgttatccaggagaccttccccaacctagcaagacaggtcaacatccaaattcaggaaatacagagaagaccactaagatactcctcgagaagggcaaccccaagacacataatcatcagattatccaaggttgaaatgaaagaaaaaatgttaagggcagtcagagagaaaggtcaggctacctacaaagggaagcccatcagactaacagtggatctttccgcagaaaacccacaagccagaagagagtggggaccaatattcaacattctt-aaaaaaaagaattttcaactcagaattttgcatacagccaaactaagcttcataagtgcaggagaaataaaatcatttacagacaagcaaatgctgagggattatgtcaccaccaggcctgctttacaagagctcctaaaggaagcactaaacagggaaaggaaaaaactagtaccagccactgcaaaaacacaccataatataaaaaccaaagacactatgaagaaactgcatcaactaatgttcagagtaaccaactagcatcatgatgaatggatcaaattcacac--taacaatattaatcttaaatgtaaatgggctaaatgtcccaattaaaagacacagactggcaaattgaataaagtgtcaagacccatcagtgtgcggtattcaggagacccatctcatgtgcaaagacacacataggctcaaaacaaagggacagagaaatatttaccaagcaaatgg-aaagagaaaaaaaaaa--gcaggggttgcaatcctagtctctgataaaacagaatttaaaccgacagagatcaaaaaagacaaagaaaggcat--tacacaatggtaaagggatcaatgcaacaagaagagctaactatcctaaatacatatgcacccaataaaggagcacccagattcataaaacaagttctt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29868686 933 + 172585720 aaaatattatccaggagaacttccccaacccagcaagataggtcaacatccaaattcatgaaatgcagagaataccactaagataatgctcgagaagggcaaccccaagacatataatcatcagattatccaaggttgaaatgaaagaaaaaatgttaaggggagccagaaagaaaggttgggttacttacaaagagaagcccatcagactaacagtggatctctctgcagaaaacccacaaaccagaagagagtgggggccaatattcaaccttttt-ttaaaaagaaattttcaactcagaatttcgcatacagccaacgtaagcttcataagtgaaggagaaataaaatc-tttacagaaaagcaaatgctgagggattatgtcaccaccaggcctgccgtatgaaagctcctgaaggaagcactaaacatggaaaggaaaatc-tagtaccagctactgcaaaaacacaacataatataaagaccaaagacactatgaagaaactgcatcaactagtgtgcaaagtaaccaactagcatcatgatgaatggatcaaattcacacataaaaaatattaaccttaaacgtaaatgggctaaatgtcccaattaaaagacagagaatggcaaattgaataaagtgtcgagacccatctgtgtgctgtattcaggagacccatctcatgtgcaaggacacacataggctcaaaacaaagggatagagaaatatttaccaagcaaacggaaa-----aaaaaaaaa--gcaagggttgcaattctagtctctgataaaacagaatttaaaccaacagagatgaaaaaagacaaagaaaggcattatacacaatggtaaagggatcaatgcaacaagaagagctaactattctaaatacatatgcagccaatacaggagcacccagattcataaaacaagttctt
i rheMac8.chr4             C 0 I 1867
s macFas5.chr4             29531659 931 - 170955103 aaaatattatccaggagaacttccccaacccagcaagataggtcaacatccaaattcatgaaatgcagagaataccactaagataatgctcgagaagggcaaccccaagacatataatcatcagattatccaaggttgaaatgaaagaaaaaatgttaaggggagccagaaagaaaggttgggttacttacaaagagaagcccatcagactaacagtggatctctctgcagaaaacccacaaaccagaagagagtgggggccaatatacaatcttttt-ttaaaaagaaattttcaactcagaatttcgcatacagccaaagtaagcttcataagtgaaggagaaataaaatc-tttacagaaaagcaaatgctgagggattatgtcaccaccaggcctgccgtatgagagctcctgaaggaagcactaaacatggaaaggaaaatc-tagtaccagctactgcaaaaacacaacataatataaagaccaaagacactatgaagaaactgcatcaactagtgtgcaaagtaaccaactagcatcatgatgaatggatcaaattcacacataaaaaatattaaccttaaacgtaaatgggctaaatgtcccaattaaaagacagagactggcaaattgaataaagtgtcgagacccatctgtgtgctgtattcaggagacccatctcatgtgcaaggacacacataggctcaaaacaaagggatagagaaatatttaccaagcaaatgg--a-----aaaaaaaaa--gcaagggttgcaattctagtctctgataaaacagaatttaaaccaacagagatgaaaaaagacaaagaaaggcattatacacaatggtaaagggatcaatgcaacaagaagagctaactattctaaatacatatgcagccaatacaggagcacccagattcataaaacaagttctt
i macFas5.chr4             C 0 I 1866
s cerAty1.NW_012002711v1     270755 930 +    766320 aaaatattatctaggagaacttccccaacccagcaagacaggtcaacatccaaattcatgaaatacagagaataccactaagatactgcttgagaagtgcaaccccaagacatataatcatcagattatccaaggttgaaatgaaag-aaaaatgttaaggcgagccagcgagaaaggttgggttacctacaaagagaagcccatcagactaacagtggatctctctgcagaaaacccacaagccagaagagagtgggggccaatattcaaccgtttt-ttaaaaag-aattttcaactcagaatttcgcatacagccaaagtaagcttcataagtgaaggagaaataaaatc-tttacagacaagcaaatgctgagggattatgtcaccaccaggcctgccttacaagagttcctgaaggaagcactagacatggaaaggaaaaac-tagtaccagctactgcaaaaacacaacataatataaagaccaaagacactatgaagaaactgcatcaactaatgttcaaagtcaccaactagcatcatgatgaatggatcaaattcacacataaaaaatattaaccttaaatgtaaatgggctaaatgtcccaattaaaagacagagaccggcaaattgaataaagtgtcgagacccatcggtgtgctgtattcaggagacccatctcatgtgcaaggacacacataggctcaaaacaaagggaaagagaaatatttaccaagcaaatgg-aa-----aaaaaaaaa--gcaggggttgcaattctagtctctgataaaacagaatttaaaccaacagagatcaaaaaagacaaagaaaggcattatacacaatggtaaagggatcaatacaacaagaagagctaactatcctaaatacacatgcagccaatacaggagcacccagattcataaaacaagttctt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28772680 906 -  71996105 aaaatattatccaggagaacttccccaacccagcaagacaggtcaacatccaaattcatgaaat--agagaataccactaagatactgctcgagaagggcaaccccaagacatataatcatcagattatccaaggttgaaatgaaagaaaaaatgttaaggggagccagagagaaaggttgggttacctacaaagagaagcccatcagactaacagtggatctctctgcagaaaacccacaagccagaagagagtgggggccaatattcaacctcttt-ttaaaaagaaattttcaactcagaatttcgcatacagccaaagtaagcttcataagtgaaggagaaataaaatc-tttacagacaagcaaatgctgagggattatgtcaccaccaggcctgccttacaagagctcctgaaggaagcactaaacatggaaaggaaaaac-tagtaccagctactgcaaaaacacaacataatataaagaccaaagacactatgaagaaactgcatcaactaatgttcaaagtaaccaactaacatcatgatgaatggatcaaattcacacataaaaaatattaaccttaaatgtaaatgggctaaatgtcccaattaaaagacagagaccggcaaattgaataaagtgtc--------------------------gagacccatctcatgggcaaggacacacataggctcaaaacaaagggatagagaaatatttactaagcaaatgg-aa-----aaaaaaaaaaggcaggggttgcaattctagtctctgataaaacggaatttaaaccaacagagatcaaaaaagacaaagaaaggcattatacacaatggtaaagggatcaatgcaacaagaagagctaactatcctaaatacatatgcagccaatacaggagcacccagattcacaaaacaagttctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     255008 931 -    352859 aaaatattatccaggagaacttccccaacccagcaagacaggtcaacatccaaattcatgaaatacagagaataccactaagatactgcttgagaagtgcaaccccaagacatataatcatcagattatccaaggttgaaatgaaagaaaaaatgttaaggggagccagcgagaaaggttgggttacctacaaagagaagcccatcagactaacagtggatctctctgcagaaaacccacaagccagaagagagtgggggccaatattcaaccgtttt-ttaaaaag-aattttcaactcagaatttcgcatacagccaaagtaagcttcataagtgaaggagaaataaaatc-tttacagacaagcaaatgctgagggattatgtcaccaccaggcctgccttacaagagttcctgaaggaagcactagacatggaaaggaaaaac-tagtaccagctactgcaaaaacacaacataatataaagaccaaagacactatgaagaaactgcatcaactaatgttcaaagtcaccaactagcatcatgatgaatggatcaaattcacacataaaaaatattaaccttaaatgtaaatgggctaaatgtcccaattaaaagacagagaccggcaaattgaataaagtgtcgagacccatcggtgtgctgtattcaggagacccatctcatgtgcaaggacacacgtaggctcaaaacaaagggaaagagaaatatttaccaagcaaatgg-ga-----aaaaaaaaa--gcaggggttgcaattctagtctctgataaaacagaatttaaaccaacagagatcaaaaaagacaaagaaaggcattatacacaatggtaaagggatcaatacaacaagaagagctaactatgctaaacacacatgcagccaatacaggagcacccagattcataaaacaagttctt
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570741           495110   0 +   1532071 C
e proCoq1.NW_012152574v1     383110 277 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2014336   6 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e macNem1.NW_012011356v1    2518144 2732 -   2996164 I

a score=2783490.000000
s hg38.chr6_GL000254v2_alt   628119 1545 +   4827813 acagacctacaaa-agacttagactcccatacaataataatggaagactttaacactccactgtcaatattagacagatcaatgagacagaaaattatcaagaatattcaggacttgaattcagctctggaccaagcagacctaatagacatctactgaactctccaccccaaatcaacagaatatacattcttctcagcaccacatagcaattattctaaaatcgaccacataattggaagtaaaacactcctcagcaaatgcaaaagaatggaaatcaaaacaaacagtctctcagaccacagtgcaatcaaattagaactcagcattaagaaactcactcaaaacctcacaactacatgaaacctcacaattacattaacaacctgctcctgaatgactactgggtaaataatgaaattaagggaggaataatgaagttatttgaaaccagtgagaacaaagagacaataaactataatctcagggacacagctagagcagtgttaagagaaaaatttagagcactaaatgcccacgtcagaaagcaggaaagatttaaaatcgacccccta-----acatcacaattaaaagagctaaagaagcaagagcaaacacattcaaaagctagcagaagacaagaaataactaagatcagagcagaactgaaggagacagagacacg-aaaaacccttcaaaacatcagtgaatgcaggagctggttatttgagaagattaacaaaagagatagactgctagccagactagtaaagaagaaaagagagaagaatcaaatagacacaataaaaaatggtaaaggagttatcaccactgatcccacagtaatagaaactaccatgagagaatactataaatatctctatgcaaataaactagaaaatctagaagaaatggataaattcctggacacatacacccttccaagcctaaaccaggaagaagtcgaatccctgaatagaccaataacaagtactgaaattgaggcagtaattagtagcctaaaaaaacaaaaaatctccaggatctgatggattcatggctgaattctaccagaggtacaaagaggagctggtaccattcgttttgaaactattccaaacaataaaaaagagggactcctctctagctcattttatgaggccagcatcatcctgataccaaaacctggcaaagacacaac-aaaaaaagaaaatttcagtccaatatccctaatgaacctcgatgcaaaaatgctcaataaactactggcaaaccaaatccagcagcacatcaaaaatcttatccactacaatcaagtcggcttcatacctgggataaaaggctggttcaacatacacaaatcaataaacataatctatcacataaac--aaccaatgacaaaaaccacatgattatctcaatagatgcagaaaaggcctttgataaaattccataccccttcatgctaaaaactctcaataaactaaatattgatggaacatatatataaaaa-aagacctattcacaacaaacccatagccaatatcata
s panTro5.chr6             29600173 1546 + 175400573 acagacctgcaaagagacttagactcccacacaataataatggaagactttaacactccactgtcaatattagacagatcaatgatacagaaaattatcaagaatattcaggacttgaattcagctctggaccaagcagacctaatagacatctactgaactctccaccccaaatcaacagaatatacattcttctcagcaccacatagcaattattctaaaatcgactacataattggaagtaaaacactcctcagcaaatgcaaaagaatggaaatcaaaacaaacagtctctcagaccacagtgcaatcaaattagaactcagcattaagaaactcactcaaaacctcacaactacatgaaacctcacaattacattaacaacctgctcctgaatgactactgggtaaataatgaaattaagggaggaataatgaagttatttgaaaccaatgagaacaaagagacaataaactataatctcagggacacagctagagcagtgttaagagaaaaatttatagcactaaatgcccacgtcagaaagcaggaaagatttaaaatcgacccccta-----acatcacaattaaaagagctaaagaagcaagagcaaacacattcaaaagctagcagaagacaagaaataactaagatcagagcagaactgaaggagatagagacacg-aaaaacccttcaaaacatcagtgaatgcaggagctggttatttgagaagattaacaaaagagatagactgctagccagactagtaaagaagaaaagagagaagaatcaaatagacacaataaaaaatggtaaaggagttatcaccactgatcccacagtaatagaaactaccatcagagaatactataaatacctctatgcaaataaactagaaaatctagaagaaatggataaattcctggacacatacacccttccaagcctaaaccaggaagaagtcgaatccctgaatagaccaataacaagtactgaaattgaggcagtaattagtagcctaaaaaaacaaaaaatctccaggatctgatggattcatggctgaattctaccagaggtacaaagaggagctggtaccattcgttttgaaactattccaaacaataaaaaagagggactcctctctagttcattttatgaggccagcatcatcctgataccaaaacctggcaaagacacaac-aaaaaaagaaaatttcagtccaatatccctaatgaacctcgatgcaaaaatgctcaataaactactggcaaaccaaatccagcagcacatcaaaaatcttatccactacaatcaagtcggcttcatacctgggataaaaggctggttcaacatacacaaatcaataaacataatccatcacataaac--aaccaatgacaaaaaccacatgattatctcaatagatgcagaaaaggcctttgataaaattccataccccttcatgctaaaaactctcaataaactaaatattgatggaacatatatataaaaa-aagacctattcacaacaaacccatagccaatatcata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29838400 1546 + 173848474 acagacctgcaaagagacttagactcccacacaataataatggaagactttaacactccactgtcaatattagacagatcaatgatacagaaaattatcaagaatattcaggacttgaattcagctctggaccaagcagacctaatagacatctactgaactctccaccccaaatcaacagaatatacattcttctcagcaccacatagcaattattctaaaatcgactacataattggaagtaaaacactcctcagcaaatgcaaaagaatggaaatcaaaacaaacagtctctcagaccacagtgcaatcaaattagaactcagcattaagaaactcactcaaaacctcacaactacatgaaacctcacaattacattaacaacctgctcctgaatgactactgggtaaataatgaaattaagggaggaataatgaagttatttgaaaccaatgagaacaaagagacaataaactataatctcagggacacagctagagcagtgttaagagaaaaatttatagcactaaatgcccacgtcagaaagcaggaaagatttaaaatcgacccccta-----acatcacaattaaaagagctaaagaagcaagagcaaacacattcaaaagctagcagaagacaagaaataactaagatcagagcagaactgaaggagatagagacacg-aaaaacccttcaaaacatcagtgaatgcaggagctggttatttgagaagattaacaaaagagatagactgctagccagactagtaaagaagaaaagagagaagaatcaaatagacacaataaaaaatggtaaaggagttatcaccactgatcccacagtaataggaactaccatcagagaatactataaatacctctatgcaaataaactagaaaatctagaagaaatggataaattcctggacacatacacccttccaagcctaaaccaggaagaagtcgaatccctgaatagaccaataacaagtactgaaattgaggcagtaattagtagcctaaaaaaacaaaaaatctccaggatctgatggattcatggctgaattctaccagaggtacaaagaggagctggtaccattcgttttgaaactattccaaacaataaaaaagagggactcctctctagttcattttatgaggccagcatcatcctgataccaaaacctggcaaagacacaac-aaaaaaagaaaatttcagtccaatatccctaatgaacctcgatgcaaaaatgctcaataaactactggcaaaccaaatccagcagcacatcaaaaatcttatccactacaatcaagtcggcttcatacctgggataaaaggctggttcaacatacacaaatcaataaacataatccatcacataaac--aaccaatgacaaaaaccacatgattatctcaatagatgcagaaaaggcctttgataaaattccataccccttcatgctaaaaactctcaataaactaaatattgatggaacatatatataaaaa-aagacctattcacaacaaacccatagccaatatcata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5641215 1549 +   6154872 acagacctacaaagagacttagactcccacacaataataatggaagactttaacactccactgtcaatattagacagatcaatgagacagaaaattatcaagaatactcaggacttgaattcagctctggaccaagcagacctaatagacatctactgaactctccaccccaaatcaacagaatatacattcttctcagcaccacatagcaattattctaaaatcgaccacataattggaagtaaaacagtcctcagcaaatgcaaaagaatggaaatcaaaacaaacagtctctcagaccatagtgcaatcaaattagaactcagcattaagaaactcactcaaaacctcacaactacatgaaacctcacaattacattaacaacctgctcctgaatgactactgggtaaataatgaaattaagggaggaataatgaagttatttgaaaccaatgagaacaaagagacaataaactataatctcagggacacagctaaagcagtgttaagagaaaaatttatagcactaaatgcccacttcagaaagcaggaaagatttaaaatcagcccccta-----acatcacaattaaaagagctaaagaagcaagagcaaacacattcaaaagctagcagaagacaagaaataactaagatcagagcagaactgaaggagatagagacacg-aaaaacccttcaaaacatcagtgaatgcaggagctggttatttgagaagattaacaaaagagatagactgctagccagattagtaaagaagaaaagagagaagaatcaaatagacacaataaaaaatggtaaaggagttatcaccactgatcccacagtaatagaaactaccatcagagaatactataaatacctctatgcaaataaactagaaaatctagaagaaatggataaattcctggacacatacacccttccaagcctaaaccaggaagaagtcgaatccctgaatagaccaataacaagtactgaaattgaggcagtaattagtagcctaaaaaaacaaaaaatctccaggatctgacggattcatggctgaattctaccagaggtacaaagaggagctggtaccattcgttttgaaattattccaaacaataaaaaagagggactcctctctagctcattttatgaggccagcatcatcctgataccaaaacctggcaaagacacaacaaaaaaaagaaaatttcagtccaatatccctaatgaacctcgatgcaaaaatgctcaataaactactggcaaaccaaatccagcagcacatcaaaaatcttatccactacaatcaagtcagcttcatccctgggataaagggctggttcaacatacacaaatcaataaacataatccatcacataaacagaaccaatgacaaaaaccacacgattatctcaatagatgcagaaaaggcctttgataaaattccataccacttcatgttaaaaactctcaataaaataagtattgatggaacatatatataaaaa-aagacctattcacaacaaacccatagccaatatcata
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     271685 1541 +    766320 acagacctacaaagagacttagatt-tcacacaataataatggaagattttaatacttcactgtcaatatt----agatcaatgagacagaaaattatcaaggatattcaggacttgaattcagctctggaccaagcagacctaatagacatttacagaactctccaccccaaatcaacaggatatacattcttctcagcagcacatagcaattattctaaaatcgaccacaaaattggaagtaaaacactcctcagcaaatgcaaaacaatggaaatca----aaacagtctctcagatcacagtgcaatcaaattagaacttaggattaagaaactcactcaaaacctcacaactacatgaaacctcacaattacatgaacaacctgctcctgaatgactactggttaaataatgaaataaagggaggaataatgaagttctttgaaaccaatgagaacaaagagacaatgcaccacaatctcaggaacacagctaaagcagtgttaagagaaaaatttacagcactaaatgcccacgtcggaaagcaggaaagatctaaaatcgatcccctaacatcacatcacaattaaaagaactaaagaagcaagagcaaacaaattcaaaacctagcagaagacaagaaataactaagatcagagcagaactgaaggagatagagacacg-aaaagcccttcaaaacatcaatgaatgcaggagctggttatttgaaaagatgaacaaaacagatagactgctagcaagactagtaaagaagaaa--agagaagaatcaaatagacacaataaaaaatgataaaggagttatcaccactga-cctatagtaatagaaactaccatcagagaatactttaaacacctctatgcacataaactagaaaatctagaagaaatggataaattcctggacacatacacccttccaagggtaaaccaggaagaagttgaatccctgaatagaccaataacaagtactgaaattgaggcagtgattaatatcct-aaaaaacaaaaaaagtccaggacctaatggattcacagctgaattctaccagaggtacaaagagcagctggtaccattccttttgaaactattccaaacaataataaagagggacttctcccaagctcattttatgaggccagcatcatcctgattccataacctggaaaagacacaac-aaaaaaagaaaatttcaggccaatatccctaatgaacatcgatgcaaaaatgctcaataaaccactggcaaaccaaatccagcagcacatcaaaaatcttatccactacaatcaagtcagcttcatccctgggacgaaaggctggttcaacatatgcaaatcaataaacataatccatcacataaacagaaccaatgagaaaaaccacatgattatctcaatagatgcagaaaaggcctttgataaaattcaataccccttcatgctaaaaactctcaataaactaagtattgatggaacacacacatatatataagacctattcacaacaaacccatagccaatatcata
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28773586 1541 -  71996105 acagacctacaaagagacttagaat-tcacacagtaataatggaagattttaatacttcactgtcaatattagacagatcaatgagacagaaaattatcaaggatattcaggacttgaattcagctctggaccaagcaaacctaatagacatctacagaactctccaccccaaatcaacaggatatacattcttctcagcagcacatagcaattattctaaaatcgatcacaaaattggaagtaaaacactcctcagcaaatgcaaaagaacggaaatca----taacagtctctcagatcacagtgcaatcaaattagaactcaggattaagaaactcactcaaaacctcacaactacacgaaacctcacaattacatgaacaacctgctcctgaatgactactggttaaataatgaaattaagggaggaataatgaagttctttgaaaccaatgagaacaaagagacaatgtaccacaatctcaggaacacagctaaagcagtgttaagagaaaaatttatagcactaaatgcccatgtcagaaagcaggaaagatctaaaatcgatccccta-----acatcacaattaaaagaactaaagaagcaagagcaaatcaattcaaaatctagcagaagacaagaaataactaagatcagagcagaactgaagcagatagagacacgaaaaagcccttcaaaacatcaatgaatgcaggagctggttatttgaaaagatgaacaaaacagatagactgctagcaagactagtaaagaagaaa--agagaagaatcaaatagacacaataaaaaatgataaaggagttatcaccactga-cctacagtaatagaaactaccatcagagaatactttaaacacctctatgcacataaactagaaaatctagaagaaatggataaattcctggacacatacacccttccaagggtaaaccaggaagaagttgaatccctgaatagaccaataacaagtactgaaattgaggcagttattaatagcct-aaaaaacaaaaaatctccaggacctaatggattcacggctgaattctaccagaggtacaaagaggagctggtaccattccttttgaaactattccaaacaataataaagagggactgctccctagctcattttatgaggccagcatcatcctgattccataacctggcaaagacacaac-aaaaaaagaaaatttcaggccaatatccctgatgaacatcgatacaaaaatcctcaataaaccactggcaaaccaaatccagcagcacatcaaaaatcttatccactacaatcaagtcagcttcaaccctgggacgaaaggctggttcaacatacacaaatcaataaacgtaatccatcacataaacagaaccaatgagaaaaaccacatgattatctcaatagatgcagaaaaggcctttgataaaattcaatatcccttcatgctaaaaactctcaataaactagatattgatggaacacacatatatataaaagacctattcacaacaaacccatagccaatatcata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     255939 1534 -    352859 acagacctacaaagagacttagatt-tcacacaataaaaatggaagattttaatacttcactgtcaatattagacagatcaatgagacagaaaattatcaaggatattcaggacttgaattcagctctggaccaagcagacctaatagacatttacagaactctccaccccaaatcaacaggatatacattcttctcagcagcacatagcaattattctaaaatcgaccacaaaattagaagtaaaacactcctcagcaaatgcaaaacaatggaaatca----aaacagtctctcagaccacagtgcaatcaaattagaactcaggattaagaa----actcaaaacctcacaactacatgaaacctcacaattacatgaacaacctgctcctgaatgactactggttaaataataaaattaagggaggaataatgaagttctttgaaaccaatgagaacaaagagacaatgtaccacaatctcaggaacacagctaaagcagtgttaagagaaaaatttatagcactaaatgcccatgtcagaaagcaggaaagatctaaaatcgatccccta-----acatcacaattaagagaactaaagaagcaagagcaaacaaattcaaaacctagcagaagacaagaaataactaagatcagagcagaactgaaggagatagagacacg-aaaagcccttcaaaacatcaatgaatgcaggagctgattatttgaaaagatgaacaaaacagatagactgctagcaagactagtaaagaagaaa--agagaagaatcaaatagacacaataaaaaatgataaaggagttatcaccactga-cctacagtaatagaaactaccatcagagaatactttaaacacctctatgcacataaactagaaaatctagaagaaatggataaattcctggacacatacacccttccaagggtaaaccaggaagaagttgaatccctgaatagaccaataacaagtactgaaattgaggcagcgattaatatcct-aaaaaacaaaaaatctccaggacctaatggattcacggctgaattctaccagaggtacaaagaggagctggtaccattccttttgaaactattccaaacaataataaagagggactcctccctagctcattttatgaggccagcatcatcctgattccataacctggcaaagacacaac-aaaaaaagaaaatttcaggccaatatccctaatgaacatcgatgcaaaaatgctcaataaaccactggcaaaccaaatccaacagcacatcaaaaatcttatccactacaatcaagtcagcttcatccctgggatgaaagactggttcaacatacgcaaatcaataaacgtaatccatcacataaacagaaccaatgagaaaaaccacatgattatctcaatagatgcagaaaaggcctttgataaaattcaatatcccttcatgctaaaaactctcaataaactaagtactgatggaacacacacatatat--atgacctattcacaacaaacccatagccaatatcata
i manLeu1.NW_012099655v1   C 0 I 8
e dasNov3.JH570741           495110    0 +   1532071 C
e proCoq1.NW_012152574v1     383110  277 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2014336    6 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e macNem1.NW_012011356v1    2518144 2732 -   2996164 I
e macFas5.chr4             29532590 1866 - 170955103 I
e rheMac8.chr4             29869619 1867 + 172585720 I

a score=6301.000000
s hg38.chr6_GL000254v2_alt   629664 6 +   4827813 atgaat
s panTro5.chr6             29601719 6 + 175400573 atgaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29839946 6 + 173848474 atgaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5642764 6 +   6154872 atgaat
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     273226 6 +    766320 gtaaat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28775127 6 -  71996105 gtaaat
i chlSab2.chr17            C 0 C 0
e dasNov3.JH570741           495110 0 +   1532071 C
e proCoq1.NW_012152574v1     383110 277 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2014336 6 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     257473 8 -    352859 I
e macNem1.NW_012011356v1    2518144 2732 -   2996164 I
e macFas5.chr4             29532590 1866 - 170955103 I
e rheMac8.chr4             29869619 1867 + 172585720 I

a score=1191818.000000
s hg38.chr6_GL000254v2_alt   629670 2157 +   4827813 gggcaaaagctggaagcgtactctttgaaaacctgcacaagtcaaggatgccctctctcaccactcctattccacatagtattggaagttctgcccagggcaatcaggcaagagaaagaaataaatggtattcaaataggaagagaggaagtctaattgcctctgtttgcagatgacataattgtatatttagaaaaccccatcatctcagcccaaaactccttaggctgatgagccacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaattacaagcattcctatacaccaataatagacaagcagaaagctgaatcatgagtgaactcccattcacaattaccataaaaaaataagatacctaggaatacaacttacaagggatgtgatggacctctttaaggagaattacaaactgcttctcaaggaaataagagaggacacaaatgaagagaaaaaaattccatggtcatggatacgaagaatcaatactgtgtaaatggccatactgcccaaagtaatttatagattcaatgctattcccatcaagctaccattgattttcttctcagaactagaaaaaacgactttaaatttcatatggaaccaaaaaaagagcccgtatagccaagacaatcctaagcaaaaagaacaaagctggaggcatcatgttacctgacttcaaactagactacaaggctacagtaaccaaaacagcatgatactggtaccaaaactgatatatagaccaatggaacagaacagaggcctcagaaataacaccacacatctacaacctgacaaacctgacaaaacctttgttttgacaaacctgaaaaaacctgacaaacctgacaaaaacaagcaatggggaaaggattctttgttgaataattggtgctgggaaaattggctagccacatgcagaaaacagaaactggacccctcccttacaccttatacaaaaattaactcaagatggattaaagacttaaacataaaacctaaacccatacaaaccctagaagaaaaccttggcaataccattcaggacataggcatgggcaaagacttcatgactaaaacaccaaaagcaatgcaacaaaagccaaaattgacaaacgggatctaattaaactaaagagcttctgcatagaaaaaaaaaaaaaaactatcatcggactgaacaggaaacctacagaatgggagaaaattttggctatctatccatctggcaaaggtctaatatccagaatctacaaggaacttaaacatatttacaagaaaaaacaaacaaccccatcaaaaagtgggtgatggatatgaacagacacttctcaaaagaagacatttatgtggccaacaaacatatgaaaaaaagctcatcatcatgggtcattatagaaatgcaaatcaaaaccacaataagataccatctcacgccagtttgaatggaaatcattaaaaagtctgcaaacagcagatgttggcgaggatgtggagaaataggaaggcttttacattgttgatgggagtgtaaattagttcaaccattgtggaaggcagtgtggcaattacccaaggatctataaccagaaatactatttaacccagcaatcccattactgggtatatacccaaaggattataaatcattctactataaagacacatgcatacgtaggtttattgtggcattatttaaagtagcaaagacttggaaccaacacaaatgcccatcaatgatagactggataaagaaaatgtggcacatatataccatggaatactatgcagccataaaaaagaatgagatcatgtcctttgtagggacatggatgaagctgggaaccatcatcctcagcaaactatcacaggaacagaaaaccagacactacatgttctcactcataagtgggagttgaacaatgagaacacatggacacagggagggaacctcacacactggggcctgttggggagtaggtggcaaggggagggagagcattaggacaaatagctaatgcatgcggggcttaaaaccgagatgacgtgttgatcagtgcagcaaaccaccatggcacatgtacacctatgtaacaaacctgcacattctgcatatgtatccctgaacttaaagtaaagtat
s panTro5.chr6             29601725 2154 + 175400573 gggcaaaagctggaagcgtactctttgaaaacctgcacaagtcaaggatgccctctctcaccactcctattccacatagtattggaagttctgcccagggcaatcaggcaagagaaagaaataaacggtattcaaataggaagagaggaagtctaattgcctctgtttgcagatgacataattgtatatttagaaaaccccatcatctcagcccaaaactccttaggctgatgagccacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaattacaagcattcctatacaccaataatagacaagcagaaagctgaatcatgagtgaactcccattcacaattaccataaaaaaataagatacctaggaatacaacttacaagggatgtgatggacctctttaaggagaattacaaactgcttctcaaggaaataagagaggacacaaatgaagagaaaaaaattccatggtcatggatacgaagaatcaatactgtgtaaatggccatactgcccaaagtaatttatagattcaatgctattcccatcaagctaccattgattttcttctcagaactagaaaaaacgactttaaatttcatatggaaccaaaaaaagagcccgtatagccaagacaatcctaagcaaaaagaacaaagctggaggcatcatgctacctgacttcaaactagactacaaggctacagtaaccaaaacagcatgatactggtaccaaaactgatatatagaccaatggaacagaacagaggcctcagaaataacaccacacatctacaacctgacaaacctgacaaaacctttgttttgacaaacctgataaaacctgacaaacctgacaaaaacaagcaatggggaaaggattctttgttgaataattggtgctgggaaaactggctagccacatgcagaaaacagaaactggacccctctcttacaccttatacaaaaattaactcaagatggattaaagacttaaacataaaacctaaacccatacaaaccctagaagaaaaccttggcaataccattcaggacataggcatgggcaaagacttcatgactaaaacaccaaaagcaatgcaacaaaagccaaaattgacaaacgggatctaattaaactaaagagcttctgcatag-aaaaaaaaaaaaaactatcatcggactgaacaggaaacctacagaatgggagaaaatgttggctatctatccatctggcaaaggtctaatatccagaatctacaaggaacttaaacatatttacaagaaaaaacaaacaaccctatcaaaaagtgggtgatggatatgaacagacacttctcaaaagaagacatttaggtggccaacaaac--atgaaaaaaagctcatcatcatgggtcattatagaaatgcaaatcaaaaccacaataagacaccatctcatgccagtttgaatggcaatcattaaaaagtctgcaaacagcagatgttggcgaggatgtggagaaataggaaggcttttacattgttgatgggagtgtaaattagttcaaccattgtggaaggcagtgtggcaattacccaaggatctataaccagaaatactatttaacccagcaatcccattactgggtatatacccaaaggattataaatcattctactataaagacacgtgcatacgtaggtttattgtggcactatttaaagtagcaaagacttggaaccaacacaaatgcccatcaatgatagactggataaagaaaatgtggcacatatataccatggaatactatgcagccataaaaaagaatgagatcatgtcctttgtagggacatggatgaagctgggaaccatcatcctcagcaaactatcacaggaacagaaaaccagacaccacatgttctcactcataagtgggagttgaacaatgagaacacatggacacagggagggaacctcacacactggggcctgttggggagtaggtggcaaggggagggagagcattaggacaaatagctaatgcatgcggggcttaaaaccgagataacgtgttgatcagtgcagcaaaccaccatggcacatgtacacctatgtaacaaacctgcacattctgcacatgtatccctgaacttaaagtaaagtat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29839952 2153 + 173848474 gggcaaaagctggaagcgtactctttgaaaacctgcacaagtcaaggatgccctctctcaccactcctattccacatagtattggaagttctgcccagggcaatcaggcaagagaaagaaataaacggtattcaaataggaagagaggaagtctaattgcctctgtttgcagatgacataattgtatatttagaaaaccccatcatctcagcccaaaactccttaggctgatgagccacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaattacaagcattcctatacaccaataatagacaagcagaaagctgaatcatgagtgaactcccattcacaattaccataaaaaaataagatacctaggaatacaacttacaagggatgtaatggacctctttaaggagaattacaaactgcttctcaaggaaataagagaggacacaaatgaagagaaaaaaattccatggtcatggatacgaagaatcaatactgtgtaaatggccatactgcccaaagtaatttatagattcaatgctattcccatcaagctaccattgattttcttctcagaactagaaaaaacgactttaaatttcatatggaaccaaaaaaagagcccgtatagccaagacaatcctaagcaaaaagaacaaagctggaggcatcatgctacctgacttcaaactagactacaaggctacagtaaccaaaacagcatgatactggtaccaaaactgatatatagaccaatggaacagaacagaggcctcagaaataacaccacacatctacaacctgacaaacctgacaaagcctttgttttgacaaacctgataaaacctgacaaacctgacaaaaacaagcaatggggaaaggattctttgttgaataattggtgctgggaaaactggctagccacatgcagaaaacagaaactggacccctcccttacaccttatacaaaaattaactcaagatggattaaagacttaaacataaaacctaaacccatacaaaccctagaagaaaaccttggcaataccattcaggacataggcatgggcaaagacttcatgactaaaacaccaaaagcaatgcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagcttctgcatag--aaaaaaaaaaaaactatcatcggactgaacaggaaacctacagaatgggagaaaatgttggctatctatccatctggcaaaggtctaatatccagaatctacaaggaacttaaacatatttacaagaaaaaacaaacaaccctatcaaaaagtgggtgatggatatgaacagacacttctcaaaagaagacatttaggtggccaacaaac--atgaaaaaaagctcatcatcatggctcattatagaaatgcaaatcaaaaccacaataagacaccatctcatgccagtttgaatggcaatcattaaaaagtctgcaaacagcagatgttggcgaggatgtggagaaataggaaggcttttacattgttgatgggagtgtaaattagttcaaccattgtggaaggcagtgtggcaattacccaaggatctataaccagaaatactatttaacccagcaatcccattactgggtatatacccaaaggattataaatcattctactataaagacacatgcatacgtaggtttattgtggcactatttaaagtagcaaagacttggaaccaacacaaatgcccatcaatgatagactggataaagaaaatgtggcacatatataccatggaatactatgcagccataaaaaagaatgagatcatgtcctttgtagggacatggatgaagctgggaaccatcatcctcagcaaactatcacaggaacagaaaaccagacaccacatgttctcactcataagtgggagttgaacaatgagaacacatggacacagggagggaacctcacacactggggcctgttggggagtaggtggcaaggggagggagagcattaggacaaatagctaatgcatgcggggcttaaaaccgagataacgtgttgatcagtgcagcaaaccaccatggcacatgtacacctatgtaacaaacctgcacattctgcacatgtatccctgaacttaaagtaaagtat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5642770 2149 +   6154872 gggcaaaagctggaagcgtactctttgaaaacctgcacaagtcaaggatgccctctctcactactcctattccacatagtattggaagttctgcctagggcaatcaggcaagagaaagaaataaacggtattcaaataggaagagaggaagtctaattgcctctgtttgcagatgacataattgtatatttagaaaaccccatcatctcagcccaaaactccttaggctgatgagccacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaattacaagcattcctatacaccaataatagacaagcagagagctgaatcatgagtgaactcccattcacaattaccataaaaaaataaaatacctaggaatacaacttacaagggatgtgatggacctctttaaggagaattacaaactgcttctcaaggaaataagagaggacacaaatgaagagaaaaaaattccatggtcatggatacgaagaatcaatacagtgtaaatggccatactgcccaaagtaatttatagattcaatgttattcccatcaagctaccattgattttcttctcagaactagaaaaaatgactttaaatttcatatggaaccaaaaaaagagcccgtatagccaagacaatcctaagcaaaaagaacaaagctggaggcatcatgctacctgacttcaaactagactacaaggctacagtaatcaaaacagcatgatactggtaccaaaacagatatatagaccaatggaacagaacagaggcctcagaaataacaccacacatctacaacctgacaaacctgacaaaacctttgttttgacaaacctgaaaaaacctgacaaacctgacaaaaacaagcaatggggaaaggattctttgttgaataattggtgctgggaaaactggctagccacatgcagaaaacagaaactggacccctcccttacacctt-tgcaaaaattaactcaagatggattaaagacttaaacataaaacctaaacccatacaaaccctagaagaaaaccttggcaataccattcaggacataggcatgggcaaagacttcatgactaaaacaccaaaagcaatgcaacaaaagccaaaattgacaaacgggatctaattaaactaaagagcttctgcatag------aaaaaaaaaatatcatcagactgaacaggaaacctacagaatgggagaaaattttggctatctatccatctggcaaaggtctaatatccagaatctacaaggaacttaaacatatttacaag-aaaaacaaacaaccccgtcaaaaagtggttgatggatatgaacagacacttctcaaaagaagacatttatgtggccaaaaaacatatgaaaaaaagctcatcatcatgggtcattatagaaatgcaaatcaaaactacaataagataccatctcatgccagtttgaatggcaatcattaaaaagtctgcaaacagcagatgttggcgaggatgtggagaaataggaaggcttttacattgttgatgggagtgtaaattagttcaaccattgtggaaggcagtgtggcaattactcaaggatctataaccagaaatactatttaacccagcaatcccattactgggtatatacccaaaggattataaatcattctactataaagacacatgcatacgtaggtttattgtggcactatttaaagtagcaaagacttgcaaccaacacaaatgcccatcaatgatagactggataaagaaaatgtggcacatatatatcatggaatactatgcagccataaaaaagaatgagatcatgtcctttgtagggacatggatgaagctgggaaccatcatcctcagcaaactatcacaggaacagaaaaccagacaccacatgttctcgctcataagtgggagttgaacaatgagaacacatggacacagggagggaacctcacacactggggcctgttggggagtaggtggcaaggggagggagaacattaggacaaatagctaatgcatgcggggcttaaaaccgagatgacgtgttgatcagtgcagcaaaccaccatggcacatgtatacctatgtaacaaacctgcacattctgcacatgtatccctgaatttaaagtaaagtat
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570741           495110    0 +   1532071 C
e proCoq1.NW_012152574v1     383110  277 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2014336    6 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     257473    8 -    352859 I
e chlSab2.chr17            28775133    0 -  71996105 C
e cerAty1.NW_012002711v1     273232    0 +    766320 C
e macNem1.NW_012011356v1    2518144 2732 -   2996164 I
e macFas5.chr4             29532590 1866 - 170955103 I
e rheMac8.chr4             29869619 1867 + 172585720 I

a score=201565.000000
s hg38.chr6_GL000254v2_alt   631827 309 +   4827813 attaaaaaaaaaaaaAAAAAAAAA-----GGAA------ATCCAgggggagatcatgtgttcagttttggccatgctgaatttgagatatctgaatatctaagaaaatatgtttatttgacatat-----tttggtatgtgg-cctcagaggagaggtatgtactagagatacgaatttgtaacacatcagcatatagaggatagttgaaactactcctatggatgggagagtgtgaagtaggaaaaaagagaacacagaattgaact-------ttctcagaactaatttcctgcatgtagaagctaaactatgagactaagaaggagaagc
s panTro5.chr6             29603879 320 + 175400573 attaaaaaaaaaaaaaaaaaaaaaaaaaCGGAAATCCAGATCCAgggggagatcatgtgttcagttttggccatgctgaatttgagatatctgaatatctaagaaaatatgtttatttgacatat-----tttggtatgtgg-cctcagaggagaggtatgtactagagatacgaatttgtaacacatcagcatatagaggatagttgaaactactcctatggatgggagagtgtgaagtaggaaaaaagagaacacagaattgaact-------ttctcagaactaatttcctgcatgtagaagctaaacaatgagactaagaaggagaagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29842105 318 + 173848474 attaaaaaacaaaaaAACACAAAA--AACGGAAATCCAGATCCAgggggagatcatgtgttcagttttggccatgctgaatttgagatatctgaatatctaagaaaatatgtttatttgacatat-----tttggtatgtgg-cctcagaggagaggtatgtactagagatacgaatttgtaacacatcagcatatagaggatagttgaaactactcctatggatgggagagtgtgaagtaggaaaaaagagaacacagaattgaact-------ttctcagaactaatttcctgcatgtagaagctaaacaatgagactaagaaggagaagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5644919 312 +   6154872 attaaaaaaaaaaaaAA---AAAA-----GGAAATCCAGATCCAgggggagatcatgtgttcagttttggccatgctgaatttgagatatctgaatatctaagaaaatatgtttatttgacatat-----tttggtatgtgg-cctcagaggagaggtatgtactagagatacgaatttgtaacacatcagcatatagaggatagttgaaactactcctatggatgggagagtgtgaagtaggaaaaaagagaacacagaattgaact-------ttctcagaactaatttcctgcatgtagaagctaaactatgagactaagaaggagaagc
i gorGor5.CYUI01015250v1   C 0 C 0
s dasNov3.JH570741           495110 316 +   1532071 attgaaataggagacggtgaaaga-----gg---tccaggtctggggagc-atcatgatttcaattttactcatgttgcatttgaaacgtat-----ttcaaataaacacgagaatttgtcacatagccatgtggtacttggaccccagagaagaggcatgcactagaggga--gctttctaacacatccgcgtataaagga-aattgaaactattcatatggatgggagaatgtggaataagagataggggagtactggggcaaactacccagggtcttcagactaatttgctaggtaaaaaggatagaaaagcagaatgagaaggaataaa
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     383110 277 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2014336   6 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     257473   8 -    352859 I
e chlSab2.chr17            28775133   0 -  71996105 C
e cerAty1.NW_012002711v1     273232   0 +    766320 C
e macNem1.NW_012011356v1    2518144 2732 -   2996164 I
e macFas5.chr4             29532590 1866 - 170955103 I
e rheMac8.chr4             29869619 1867 + 172585720 I

a score=263758.000000
s hg38.chr6_GL000254v2_alt   632136 271 +   4827813 ataaaagtagaaa---gaaattcaaggaagCACTGAATTACAGTTAGTGTATGAAAGA--GTGCTGTTATTAAAAGAACTGTTTGTGAAAATAAGGGGCCCCATTTTTCTTGCCAGACCATTCCTCATGAGAAAAGCTATCCTGCAGAGAACTGCCCTCCAACACAAACATAGGTCATTATGAGATGGTATCAGCTGTCCAGTTCTCAAAATAG--CGAAGGAGGACACACTTGGCTCAGCAGCCCACCTCCCTTCTCAGGGTTTCTTACACATTAAG
s panTro5.chr6             29604199 271 + 175400573 ataaaagtagaaa---gaaattcaaggaagcacggAATTGCAGTTAGTGTATGAAAGA--GTGCTGTTATTAAAAGAACTGTTTGTGAAAATAAGGGGCCCCATTTTTCTTGCCAGACTATTCCTCATGAGAAAAGCTATCCTGTAGAGAACTGCCCTCCAACACAAACATAGGTCATTATGAGATGGTATCAGCTGTCCAGTTCTCAAAATAG--CAAAGGAGGACACACTTGGCTCAGCAGCCCACCTCTCTTCTCAGGGTTTCTTACACATTAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29842423 271 + 173848474 ataaaagtagaaa---gaaattcaaggaagcacggAATTGCAGTTAGTGTATGAAAGA--GTGCTGTTATTAAAAGAACTGTTTGTGAAAATAAGGGGCCCCATTTTTCTTGCCAGATTATTCCTCATGAGAAAAGCTATCCTGTAGAGAACTGCCCTCCAACACAAACATAGGTCATTATGAGATGGTATCAGCTGTCCAGTTCTCAAAATAG--CAAAGGAGGACACACTTGGCTCAGCAGCCCACCTCTCTTCTCAGGGTTTCTTACACATTAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5645231 271 +   6154872 ataaaagtagaaa---gaaattcaaggaagCACTGAATTGCGGTTAGTGTATGAAAGA--GTGCTGTTATTAAAAGAACTGTTTGTGAAAATAAGGGGCCCCATTTTTCTTGCCAGACTATTCCTCATGAGAAAAGCTATCCTGCAGAGAACTGCCTTCCAACACAAACATAGGTCATTATGAGATGGTATCAGCTGTCCAGTTCTCAAAATAG--CGAAGGAGGACACACTTGGCTCAGCAGCCCACCTCCCTTCTCAGGGTTTCTTACACATTAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     383387 269 +    730504 ataaaagtagaaa---taaagccaagGAACCACTGAATCACAGTTAGCATATGAAAGATGGTGCTGTTATCAAAA-AGCTGTTTGTAAATATAAGGGGCCCCAATTTTCCTACCAGACTATTCTTCGTGAGAAAAGTTATCCTGCTGAGAACTGTCCCCCAACACAAACACAGGGCATCATGAGATGGTACCAGCAGTGCAGTTCTCAAAAAGG--T---GGAGGATACACCTGGTTCAGCAGCCCACCTCCCTTCCTAGCATCTCTTACACATTTAG
i proCoq1.NW_012152574v1   I 277 C 0
s dasNov3.JH570741           495426 251 +   1532071 atagaaacaggaaactgaaaaccagggaagCATTGAATCACAGTCAGTCTATGGAAGATGGCGCCATC-TCATAA-AGCTGCTTTGGGAATAGAGGAGCCCCAATTTTGTTTCCAGACTATTTCACTTAAGAAAAGTTATCCCACTGAGACCTGCCTTCCAA-ACAAATTCAGGCCATTATGAGATCATAAAAGCAGGCCAGTTTGCAGAACAGAATGAAGGAGAAAACAC--AGCTCAGC----------------------CTCTCACATATTCAG
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2014336   6 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     257473   8 -    352859 I
e chlSab2.chr17            28775133   0 -  71996105 C
e cerAty1.NW_012002711v1     273232   0 +    766320 C
e macNem1.NW_012011356v1    2518144 2732 -   2996164 I
e macFas5.chr4             29532590 1866 - 170955103 I
e rheMac8.chr4             29869619 1867 + 172585720 I

a score=5711.000000
s hg38.chr6_GL000254v2_alt   632407 4 +   4827813 AGAA
s panTro5.chr6             29604470 4 + 175400573 AGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29842694 4 + 173848474 AGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5645502 4 +   6154872 AGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29534456 3 - 170955103 -aaa
i macFas5.chr4             I 1866 I 1
s proCoq1.NW_012152574v1     383656 4 +    730504 AGAA
i proCoq1.NW_012152574v1   C 0 C 0
s dasNov3.JH570741           495677 4 +   1532071 GGAA
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2014336 6 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     257473 8 -    352859 I
e chlSab2.chr17            28775133 0 -  71996105 C
e cerAty1.NW_012002711v1     273232 0 +    766320 C
e macNem1.NW_012011356v1    2518144 2732 -   2996164 I
e rheMac8.chr4             29869619 1867 + 172585720 I

a score=2911.000000
s hg38.chr6_GL000254v2_alt   632411 2 +   4827813 GG-
s panTro5.chr6             29604474 2 + 175400573 GG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29842698 2 + 173848474 GG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5645506 2 +   6154872 GG-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29871486 2 + 172585720 gg-
i rheMac8.chr4             I 1867 C 0
s macFas5.chr4             29534460 2 - 170955103 gg-
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2520876 2 -   2996164 gg-
i macNem1.NW_012011356v1   I 2732 C 0
s cerAty1.NW_012002711v1     273232 2 +    766320 gg-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28775133 2 -  71996105 gg-
i chlSab2.chr17            C 0 C 0
s proCoq1.NW_012152574v1     383660 2 +    730504 AG-
i proCoq1.NW_012152574v1   C 0 C 0
s dasNov3.JH570741           495681 2 +   1532071 -AT
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2014336 6 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     257473 8 -    352859 I

a score=2903110.000000
s hg38.chr6_GL000254v2_alt   632413 609 +   4827813 AATTACTTTCTCCTGGGGATCTCCTGATGCTTTTGTTTTGT------------TACCCAAGTCCTCTATGTTCTGTGATCATTG---CCCTTTACTTCAAAACATGCCTTTCCCATGTCCCTATTTGTGGGGAAGCTGTTG--TGATAAAACGACTAAATGAAATAACTTAAACAA-TAATGTATTACTCCTCTAAGGTTATTTGCCTTAAAATAAGAATTTTCTT-----TTTCAGAATA-GCCTCTTAATTTTAGTCATTTTTTTATCCACTCAG---CCTGTATGTTTTTCTTCCTGCTTTCATTTCTGTCTGCTAATCTACATATTTTT-AAAGCTCAGCTTAAATGCCTCTTTTCTCTTCAAGTGAAATGCTTCTGTCCCTTCCTGGAAAATCTATAGGCATTTGTTTCAATCTTGATTATGACACATAACACACA-ACATACTTATTTGTGTGAC--ATATCACTTGTTTGTCCATAATATCTTATGGTGCATATTCTGTCTTACTAATCTATTTCTCAATGAATTAATACGTAACTGGGGACACAGTGGTCTTACATTCAGTAATGGATTACTACTGTTGGAATATAAGGCAGTATAGCAAAATTTTCCAAG---AAAACAATTGTATTTCCTCC-C-
s panTro5.chr6             29604476 611 + 175400573 AATTACTTTCTCCTGGGGATCTCCTGATGCTTTTGTTTTGT------------TACCCAAGTCCTCTATGTTCTGTGATCATTG---CCCTTTACTTCAAAACATGCCTTTCCCATGTCCCTATTTGTGGGGAAGCTGTTG--TGATAAAACGACTAAACGAAATAACTTAAACAA-TAATGTATTACTCCTCTAAGGTTATTTGCCTTGAAATAAGAATTTTCTT-----TTTCAGAATA-GCCTCTTAATTTTAGTCA-TTTTTTAACCACTCAG---CCTGTATGTTTTTCTTCCTGCTTTCATTTCTATCTGCTCATCTACATATTTTTAAAAGCTCAGCTTAAATGCCTCTTTTCTCTTCAAGTGAAATGCTTCTGTCCCTTCCTGGAAAATCTACAGGCATTTGTTTCAATCTTGATTATGACACATAACACACA-ACATACTTATTTCTGTGACTTATATCACTTGTTTGTCCATAATATCTTATGGTGTATATTCTGTCTTACTAATCTATTTCTCAATGAATTAATACGTAACTGGGGACACAGCGGTCTAACATTCAGTAATGGATTACTACTGTTGAAATATAAGGCAGTATAGCAAAATTTTCCAAG---AAAACAATTGTATTTCCTCC-C-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29842700 611 + 173848474 AATTACTTTCTCCTGGGGATCTCCTGATGCTTTTGTTTTGT------------TACCCAAGTCCTCTATGTTCTGTGATCATTG---CCCTTTACTTCAAAACATGCCTTTCCCATGTCCCTATTTGTGGGGAAGCTGTTG--TGATAAAACGACTAAACGAAATAACTTAAACAA-TAATGTATTACTCCTCTAAGGTTATTTGCCTTGAAATAAGAATTTTCTT-----TTTCAGAATA-GCCTCTTAATTTTAGTCA-TTTTTTAACCACTCAG---CCTGTATGTTTTTCTTCCTGCTTTCATTTCTATCTGCTCATCTACATATTTTTAAAAGCTCAGCTTAAATGCCTCTTTTCTCTTCAAGTGAAATGCTTCTGTCCCTTCCTGGAAAATCTACAGGCATTTGTTTCAATCTTGATTATGACACATAACACACA-ACATACTTATTTGTGTGACTTATATCACTTGTTTGTCCATAATATCTTATGGTGCATATTCTGTCTTACTAATCTATTTCTCAATGAATTAATACGTAACTGGGGACACAGCGGTCTAACATTCAGTAATGGATTACTACTGTTGAAATATAAGGCAGTATAGCAAAATTTTCCAAG---AAAACAATTGTATTTCCTCC-C-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5645508 610 +   6154872 AATTACTTTCTCCTGGGGATCTCCTGATGCTTTTGTTTTGT------------TACCCAAGTCCTCTATGTTCTGTGATCATTG---CCCTTTACTTCAAAACATGCCTTTCCCATGTCCCTATTTGTGGGGAAGCTGTTG--TGATAAAACGACTAAACGAAATAACTTAAACAA-TAATGTATTACTCCTCTAAGGTTATTTGCCTTGAAATAAGAACTTTCTT-----TTTCAGAATA-GCCTCTTAATTTTAGTCA-TTTTTTATCCACTCAG---CCTGTATGTTTTTCTTCCTGCTTTCATTTCTATCTGCTAATCTACATATTTTT-AAAGCTCAGCTTAAATGCCTCTTTTCTCTTCAAGTGAAATGCTTCTGTCCCTTCCTGGAAAATCTATAGGCATTTGTTTCAATCTTGATTATGACACATAACACACA-ACATACTTATTTGTGTGACTTATATCACCTGTTTGTCCATAATATCTTATGGTGCGTATTATGTCTTACTAATCTATTTCTCAATGAATTAATACGTAACTGGGGACACAGTGGTCTAACATTCAGTAATGGATTACTACTGTTGAAATATAAGGCAGTATAGCAAAATTTTCCAAG---AAAACAATTGTATTTCCTCC-C-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29871488 605 + 172585720 AATTACTTTCTCCCAGGGATCTCCTGATGCTTTTGTTTTGT------------TACCCAAGTCCTTTATGTTCTATGATCATTG---CTCTTTACTTCAAAATATGCCTTTCCCATGTCCCTATTTGTGGGGAAGCTGTTG--TGGTAAAAAGACTAAACAAAATAACTTAAACAA-TGATGTACTACTCCTCTAAGGTTATTTGCCTTGAAATAAGAATTTTCTT-----TTTCAGAATA-GCCTCTTAATTTTAGTCA--TTTTTATCCACTCAG---CCTGTATGTTTTTCTTCCTGCTTTCATTTCTATCTGCTAATCTACATATTTTT-AAAGCTCAGCTTAAATGCCTCTTTTCTCTTCAACTGAAATGTTTCTGTCCCTTCCTGGAAAATCTATAGGCCTTTGTTTCAATCTTAACTATGACACATAACACACA-ACATAC----TTGTGTGACTTATATCACCTATTTGTCCATCATCTCTTATGGTGCATATTCTGTCTTACTCATCTATTTCTTAATGAATTAATAAGTAGCTGGGGACACAGTGGTCTAACATTCAGTAATGGATTACTACTGTTGGAATATAAAGCATTATAGCAAAATTTTCCAAG---AAAACAATGGTATTTCCTCC-G-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29534462 605 - 170955103 AATTACTTTCTCCCAGGGATCTCCTGATGCTTTTGTTTTGT------------TACCCAAGTCCTTTATGTTCTATGATCATTG---CTCTTTACTTCAAAATATGCCTTTCCCATGTCCCTATTTGTGGGGAAGCTGTTG--TGGTAAAAAGACTAAACAAAATAACTTAAACAA-TGATGTACTACTCCTCTAAGGTTATTTGCCTTGAAATAAGAATTTTCTT-----TTTCAGAATA-GCCTCTTAATTTTAGTCA--TTTTTATCCACTCAG---CCTGTATGTTTTTCTTCCTGCTTTCATTTCTATCTGCTAATCTACATATTTTT-AAAGCTCAGCTTAAATGCCTCTTTTCTCTTCAACTGAAATGTTTCTGTCCCTTCCTGGAAAATCTATAGGCCTTTGTTTCAATCTTAACTATGACACATAACACACA-ACATAC----TTGTGTGACTTATATCACCTATTTGTCCATCATCTCTTATGGTGCATATTCTGTCTTACTCATCTATTTCTTAATGAATTAATAAGTAGCTGGGGACACAGTGGTCTAACATTCAGTAATGGATTACTACTGTTGGAATATAAAGCATTATAGCAAAATTTTCCAAG---AAAACAATGGTATTTCCTCC-G-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2520878 606 -   2996164 AATTACTTTCTCCCAGGGATCTCCTGATGCTTTTGTTTTGT------------TACCCAAGTCCTTTATGTTCTATGATCATTG---CTCTTTACTTCAAAATATGCCTTTCCCATGTCCCTATTTGTGGGGAAGCTGTTG--TGGTAAAAAGACTAAACAAAATAACTTAAACAA-TAATGTATTACTCCTCTAAGGTTATTTGCCTCGAAATAAGAATTTTCTT-----TTTCAGAATA-GCCTCTTAATTTTAGTCA--TTTTTATCTACTCAG---CCTGTATGTTTTTCTTCCTGCTTTCATTTCTATCTGCTAATCTACATATTTTT-AAAGCTCAGCTTAAATGCCTCTTTTCTCTTCAACTGAAATGTTTCTGTCCCTTCCTGGAAAATCTATAGACCTTTGTTTCAATCTTAACTATGACACATAACACACA-ACATAC----TTGTGTGACTTATATCACCTATTTGTCCATCATCTCTTATGGTGCATATTCTGTCTTACTCATCTATTTCTTAATGAATTAATAAGTAGCTGGGGACACAGTGGTCTAACATTCAGTAATGGATTACTACTGTTGGAATATAAAGCATTATAGCAAAATTTTCCAAG---AAAACAATGGTATTTCCTCCTT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     273234 605 +    766320 AATTACTTTCTCCCAGGGATCTCCTGATGCTTTTGTTTTGT------------TACCCAAGTCCTTTATGTTCTATGATCATTG---CTCTTTACTACAAAATATGCCTTTCCCATGTCCCTATTTGTGGGGAAGCTGTTG--TGGTAAAAAGACTAAACAAAATAACTTAAACAA-TGATGTACTACTCCTCTAAGGTTATTTGCCTTGAAATAAGAATTTTCTT-----TTTCAGAATA-GCCTCTTAATTTTAGTCA--TTTTTATCCACTCAG---CCTATATGTTTTTCTTCCTGCTTTCATTTCTATCTGCTAATCTACATATTTTT-AAAGCTCAGCTTAAATGCCTCTTTTCTCTTCAACTGAAATGTTTCTGTCCCTTCCTGGAAAATCTATAGGCCTTTGTTTCAATCTTAACTATGACACATAACACACA-ACATAC----TTGTGTGACTTATATCACCTATTTGTCCATCATCTCTTATGGTGCATATTCTGTCTTACTCATCTATTTCTTAATGAATTAATAAGTAGCTGGGGACACAGTGGTCTAACATTCAGTAATGGATTACTACTGTTGGAATATAAAGCATTATAGCAAAATTTTCCAAG---AAAACAATGGTATTTCTTCC-T-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28775135 605 -  71996105 AATTACTTTCTCCCAGGGATCTCCTGATGCTTTTGTTTTGT------------TACCCAAGTCCTTTATGTTCTATGATCATTG---CTCTTTACTTCAAAATATGTCTTTCCCACATCCCTATTTGTGGGGAAGCTGTTG--TGGTAAAAAGACTAAACAAAATAACTTAAACAA-TAATGTATTACTCCTCTAAGGTTATTTGCCTTGAAATAAGAATTTTCTT-----TTTCAGAATA-GCCTCTTAATTTTAGTCA--TTTTTATCCACTCAG---CCTGTATGTTTTTCTTCCTGCTTTCATTTCTATCTGCTAATCTACATCTTTTT-AAAGCTCAGCTTAAATGCCTCTTTTCTCTTGAACTGAAATGTTTCTGTCCCTTCCTGGAAAATCTGTAGGCCTTTGTTTCAATCTTAACTATGACACATAACACACA-ACATAC----TTATGTGACTTATATCACCTATTTGTCCATCATCTCTTATAGTGCATATTCTGTCTTACTCATCTATTTCTTAATGAATTAATAAGTAGCTGGGGACACAGTGGTCTAACATTCAGTAATGGATTACTACTGTTGGAATATAAAGCATTATAGCAAAATTTTCCAAG---AAAACAATGGCATTTCCTCC-t-
i chlSab2.chr17            C 0 I 322
s manLeu1.NW_012099655v1     257481 605 -    352859 AATTACTTTCTCCCAGGGATCTCCTGATGCTTTTGTTTTGT------------TACCCAAGTCCTTTATGTTCTATGATCATTG---CTCTTTACTTCAAAATATGCCTTTCCCATGTCCCTATTTGTGGGGAAGCTGTTG--CGGTAAAAAGACTAAACAAAATAACTTAAACAA-TAATGTATTACTCCTCTAAGGTTATTTGCCTTGAAATAAGAATTTTCTT-----TTTCAGAATA-GCCTCTTAATTTTAGTCA--TTTTTATCCACTCAG---CCTGTATGTTTTTCTTCCTGCTTTCATTTCTATCTGCTAATCTACATATTTTT-AAAGCTCAGCTTAAATGCCTCTTTTCTCTTCAACTGAAATGTTTCTGTCCCTTCCTGGAAAACCTATAGGCCTTTGTTTCAATCTTAACTATGATGCATAACACACA-ACATAC----TTGTGTGACTTATATCACCTATTTGTCCATCATCTCTTATGGTGCATATTCTGTCTTACTCATCTATTTCTTAATGAATTAATAAGTAGCTGGGGACACAGTGGTCTAACATTCAGTAATGGATTACTACTGTTGGAATATAAAGCATTATAGCAAAATTTTCCAAG---AAAACAATGGTATTTCCTCC-C-
i manLeu1.NW_012099655v1   I 8 C 0
s proCoq1.NW_012152574v1     383662 619 +    730504 -AATcctttctccctgggatctcctattgcttttgttttatc-tctaggg-cccacccaagtccgctatgtcccgtggtcattattcctcctcacttcaaaacatgtcttttttgtgtcctaatctgttagggggctgtca--tgataaagtgactagatgaaataatttaaacaattaatgtgttactcctctaaggttatttgccttgaaacaagagtattttT-----TTTCAGAATATGCCTCTTAATGTTAATCA--TTTGAATCCACATAA---CCTGAATGTCTTTCTTCCTGC-CCCATTTCTATCTATTGATCTACATCTTTTTCAAAGCTCGGCTTAAATATCACATTTCTCTTCAACGGAAATGATGTCTCCCCTTCCTGGAAACTCCA-AGGCCTTCGTTTAGATCTCAACACTGACACATAATACACACGCTTAT----TTGTGTGGCTCACATCACCTATTTAGCCATAATTCCTTATATTATGTACTTTATCTCACTCATCTATTTCTTAATAGATGAATAAGCAGTTGGGAACACAGTGGCCTAACGTTCAGTAATGGATCACCACTGTTGGAACGTGGGGCACTATAGCAGAATTTTTCAAG---AAAACAACTGGGTTTCTTCC-C-
i proCoq1.NW_012152574v1   C 0 C 0
s dasNov3.JH570741           495683 581 +   1532071 AAATACTTTCTC--AGGGATCTCCTGATGTTTTTGTTTGGTCACCTAGGATTCCACCCAACTCTTCTCTGCCACACAATCATTC---CTTT---CTGCAGAACATGTTTTTCTTGTGTTCCAGTTCCTCAGATTGTAGTCGTATGGTAATGTGACCAGAGAAAA-----TAAACAATTAACATGTTACTCCTCCAAGAATATCAGCCTT----------TTTTTTTTTATATTTCAGAATACACCCTATCATTTTAGTCA--TTTGTGTCCACTCAGCAACCTGATTGTCATTCTTGCTGCCTC---TTCTGTCTGCCAATCTTCATCTTC---ACAGCTCAGCTCAAATGCCACCTCTCCCTTCACTTGAAA-------------------ATAATCTCCAGAA--TTGTTTAGATCTCAGCTGTGACATCCAACACCCA-ACATGTTTATTGGTGTGATTTATTTTGCCTATTTGGTCATGAATCCTTG----------ACCCTTGTACTTATCTAATTCTTAACAGATTTGTAAATATTTGGAGACACATAGTTTTAGCATTCAGTAATGGATTACTACTGTTGGAATATCAAGCACTACAGCAGAATTTTCCAAGAAAAAAAAAATGGGATTTCTCCC-CC
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2014336   6 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=952333.000000
s hg38.chr6_GL000254v2_alt   633022 197 +   4827813 TTTTTTACATACTTATTATGATGTAGAACTT-GGAAAAAATGTTCAGACCTTACATATTATTTTTATTCTTACAACATTTATATTAGTTAGAGTAGAGGAGTCTGTAATTTATGGTGGATTACTTAT----AAGATCAAATAGTTAACAAGTAGTGAACTAAGAGTAGAAAAAAATTCTTCTATTTCCAAATCTAGAACAAC
s panTro5.chr6             29605087 197 + 175400573 TTTTTTACATACTTATTGTGATGTAGAACTT-GGAAAAAATGTTCAGACCTTACATATTATTTTTATTCTTATAACATTTATATTAGTTAGAGTAgaggagtctgtaatttatggaggattacttat----aagatcacatagttaacaagtagtgaactaagagtagaaaaaaattcttctatttccaaatctagAACAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29843311 197 + 173848474 TTTTTTACATACTTATTGTGATGTAGAACTT-GGAAAAAATGTTCAGACCTTACATATTATTTTTATTCTTATAACATTTATATTAGTTAGAGTAgaggagtctgtaatttatggaggattacttat----aagatcacatagttaacaagtagtgaactaagagtagaaaaaaattcttctatttccaaatctagAACAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5646118 197 +   6154872 TTTTTTACATACTTATTATGATGTAGAACTT-GGAAAAAATGTTCAGACCTTACATATTATTTTTATTCTTATAACATTTAcattagttagagtagaggagtctgtaattcatggaggattacttat----aagatcacatagttaacaagtagtgaactaagagtagaaaaacattcttctatttccaaatctagAACAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29872093 198 + 172585720 TTTTTTACATACTTATTATGATGTAGGACTTGGGAAAAAATGTTCAGACTTTACATATTATTTTGATTCTTAtaccattcatattagttagagatgaggagtctgtaatttatggaggattacttat----aagatcacatagttaacaagtagtgaactaagagtagaaaaaaattcttctatttccaaatctagAACAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29535067 198 - 170955103 TTTTTTACATACTTATTATGATGTAGGACTTGGGAAAAAATGTTCAGACTTTACATATTATTTTGATTCTTAtaccattcatattagttagagatgaggagtctgtaatttatggaggattacttat----aagatcacatagttaacaagtagtgaactaagagtagaaaaaaattcttctatttccaaatctagAACAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2521484 198 -   2996164 TTTTTTACATACTTATTATGATGTAGGACTTGGGAAAAAATGTTCAgactttacatattattttgattcttataccattcatattagatagagatgaggagtctgtaatttatggaggattacttat----aagatcacatagttaacaagtagtgaactaagagtagaaaaaatttcttctatttccgaatctagAACAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     273839 198 +    766320 TTTTTTACATACTTATTATGATGTAGGACTTGGGAAAACATGTTCAGACTTTACTTATTATTTTGATTCTTAtaccattcatattagttagagatgaggagtctgtaattcatggaggattacttat----aagatcacatagttaacaagtagtgaactaagagtagaaaaaatttcttctatttccgaatctagAACAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28776062 198 -  71996105 TTTTTTACATACTTATTATGATGTAGGACTTGGGAAAAAATGTTCAGACTTTACATATTATTTTGATTCTTATACCATTCATATTAGTTAGAGAAGAGGAGTCTGTAATTTATGGAGGATTACTTAT----AAGATCACATAGTTAACAAGTAGTGAACTAAGAGTAGAAAAAAATTCTTCTATTTCCAAATCTAGAACAAC
i chlSab2.chr17            I 322 C 0
s manLeu1.NW_012099655v1     258086 198 -    352859 TTTTTTACATACTTATTATGATGTAGGACTTGGGAAAACATGTTCAGACTTTACATATTATTTTGATTCTTAtaccattcatattagttagagatgaggagtctgtaatttatggaggattacttat----aagatcacatagttaacaagtagtgaactaagagtagaaaaaatttcttctatttccgaatctagAACAAC
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     384281 196 +    730504 TTCTTTACATATTCATAGTGTTGTAGAACTT-GGAAAAAACATTCGGACCTAGCATATTGTTTTTATTCTCATAATAATCATATGAGTCAGAATTGGGCAGTCTGAAAGTTATGGAAGATTACTTAT----AAGATCACACAGTAAACAAGCAGTGAATTAAGAGTAGAAAAAA-TTCTTCTATCTCCAAATCTGGAACAAC
i proCoq1.NW_012152574v1   C 0 I 548
s dasNov3.JH570741           496264 190 +   1532071 TTCCTTACATATTCACAATACAGTAGAACTT-TAAAAAAACATTCATACCTAGCATATTGTTTTTATTCTCATAGCAATCATATGAGGTAGAATTGTAGAA--TGTAAGTTACAGCAAATAACTGATTCTAATAAGGGCATGATGAATAAACACCG----AAGAGTAAAAAAA-----TTCTTTCTCCAAATCTGGAACCAT
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2014336   6 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=974224.000000
s hg38.chr6_GL000254v2_alt   633219 236 +   4827813 ATCCTGCAGCTGGTACTCAAATTGTGCTACATGGGTCATTGTTGCCTCTCATAGGCATAG-ATTGACCCTGAGACA------------GAATAGAATTCACCACGCAAAGCACAAGT-ATTTCACACAGAGTTATAGGAAAATTACTGCTTTTCCAAGCAGCCATGGTCTTGACTCCTTACTAAAGAACC-GAAACTTGATATAATACAAGGACAACTGAGAAAATGTTTTCAGAATTTCATATCATAGTA
s panTro5.chr6             29605284 236 + 175400573 ATCCTGCAGCTGGTACTCAAATTGTGCTACATGGGTCATTGTTGCCTCTCATAGGCATAG-ATTGACCCTGACACA------------GAATAGAATTCACCACGCGAAGCACAAGT-ATTTCACACAGAGTTATAGGAAAATTACTGCTTTTCCAAGCAGCCATGGTCTTGACTCCTTACTAAAGAACC-GAAACTTGATATAATACAAGGACAACTGAGAAAATGTTTTCAGAATTTCATATCATAGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29843508 236 + 173848474 ATCCTGCAGCTGGTACTCAAATTGTGCTACATGGGTCATCGTTGTCTCTCATAGGCATAG-ATTGACCCTGACACA------------GAATAGAATTCACCACGCGAAGCACAAGT-ATTTCACACAGAGTTATAGGAAAATTACTGCTTTTCCAAGCAGCCATGGTCTTGACTCCTTACTAAAGAACC-GAAACTTGATATAATACAAGGACAACTGAGAAAATGTTTTCAGAATTTCATATCATAGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5646315 236 +   6154872 ATCCTGCAGCTAGTACTCAAATTGTGCTACATGGGTCATTGTTGCCTCTCATAGGCATAG-ATTGACCCTGACACA------------GAATAGAATTCACCACGCGAAGCACAAGT-ATTTCACACAGAGTTATAGGAAAATTACTGCTTTTCCAAGCAGCCATGGTCTTGACTCCTTACTAAAGAACC-GAAACTTGATATAATAGAAGGACAACTGAGAAAATGTTTTCAGAATTTCATATCATAGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29872291 236 + 172585720 ATCCTGCAGCTGGTACTCAAATTGTGCTGCATGGGTCATGGTTGCCTCTCATAGGCATAG-ATTGGCCCTGGCACA------------GAATAGAGTGTACCACACGAAGCACAAGT-ATTTCACACAGAGTTATAGGAAAATTACTCCTTTTCCGAGCAGCCATGGTCTTGACTCCTTACGAAAGAACC-AAAACTTGATATAATACAAAGACAACTGAGAAAATGTTTTCAGAATTTCACATCATAGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29535265 236 - 170955103 ATCCTGCAGCTGGTACTCAAATTGTGCTGCATGGGTCATGGTTGCCTCTCATAGGCATAG-ATTGGCCCTGGCACA------------GAATAGAGTGTACCACACGAAGCACAAGT-ATTTCACACAGAGTTATAGGAAAATTACTCCTTTTCCGAGCAGCCATGGTCTTGACTCCTTACGAAAGAACC-AAAACTTGATATAATACAAAGACAACTGAGAAAATGTTTTCAGAATTTCACATCATAGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2521682 236 -   2996164 ATCCTGCAGCTGGTACTCAAATTGTGCTGCATGGGTCATGGTTGCCTCTCATAGGCATAG-ATTGGCCCTGGCACA------------GAATAGAATGTACCACACAAAGCACAAGT-ATTTCACACAGAGTTATAGGAAAATTACTCCTTTTCCGAGCAGCCATGGTCTTGACTCCTTACGAAAGAACC-AAAACTTGATATAATACAAAGACAACTGAGAAAATGTTTTCAGAATTTCACATCATAGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     274037 236 +    766320 ATCCTGCAGCTGGTACTCAAATTGTGCTGCATGGGTCATGGTTGCCTCTCATAGGCATAG-ATTGGCCCTGGCACA------------GAATAGAATGTACCACACAAAGCACAAGT-ATTTCACACAGAGTTATAGGAAAATTACTCCTTTTCCGAGCAGCCATGGTCTTGACTCCTTACGAAAGAACC-AAAACTTGATATAATACAAAGACAACTGAGAAAATGTTTTCAGAATTTCACATCGTAGTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28776260 236 -  71996105 ATCCTGCAGCTGGTTCTCAAATTGTGCTGCATGGGTCATGGTTGCCTCTCATAGGCATAG-ATTGGCCCTGGCACA------------GAATAGAATGTACCACACAAAGCACAAGT-ATTTCACACAGAGTTATAGGAAAATTACTCCTTTTCCGAGCAGCCATGGTCTTGACTCCTTACGAAAGAACC-AAAACTTGATATAATACACAGACAACTGAGAAAATGTTTTCAGAATTTCACATCATAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     258284 236 -    352859 ATCCTGCAGCTGGTACTCAAATTGTGCTGCGTGGGTCATGGTTGCCTCTCATAGGCATAG-ATTGGCCCTAGCACA------------GAATAGAATGTACCACATGAAGCACAAGT-ATTTCACACAGAGTTATAGGAAAATTACTCCTTTTCCGAGCAGCCATGGTCTTGACTCCTTATGAAAGAACC-AAAACTTGATATAATACAAAGACAACTGAGAAAATGTTTTCAGAATTTCACATCATAGTA
i manLeu1.NW_012099655v1   C 0 C 0
s dasNov3.JH570741           496454 218 +   1532071 ATACACTGGGTGGTTCTAAAACTATTCTGTGTAGGTAATGGCTGCCTCTTGTAGACAAAGCATTTGCCCTGACACAGTGCAGTCTATGGGTCAGAATTCCTCATATTCAGTACAGATCATTTCACACAAG--TACAGGGAAACTGCCCCCTCT---------------------TCCCTACTCAAGACCAGGAAACCAGACATAGTACAAGAA------AAAAGATGTTTTCAGGGACCCATCACGT----
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     384477 548 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2014336   6 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=1154515.000000
s hg38.chr6_GL000254v2_alt   633455 244 +   4827813 AAGAGCTCAAGAATGGCCTCTAAGAACCCACAAGGAGAGGCCCCCAGAAAATTCACGAGAATGTTTGCCCTCCAAG--CTCAGTCTTGACTTTTTCATTTCCTTCTAACAGACCCAGTAGCTCTTCATTAAAGAGTGTTCTCAAAAA-------AGAGACCTTAGAAATTCAGAATCTTAAAATTTCAAATTTTCTCAAAA-TATACTATCCAATTTCTTACTAAAAACTGAAATCACATAGCAA--ACGTGAAAA
s panTro5.chr6             29605520 246 + 175400573 AAGAGCTCAAGAATGGCCTCTAAGAACCCACAAGGAAAGGCCCCCAGAAAATTCACGAGAATGTTTGCCCTCCAAG--CTCAGTCTTGACTTTTTCATTTCCTTCTAACAGACCCAGTAGCTCTTCATTAAAGAGTGTTCTCAAAAA-------ACAGACCTTAGAAATTCAGAATCTTAAAATTTCAAATTTTCTCAAAA-TATACTATCCAATTTCTTACTAAAAACTGAAATCACATAGCAAACACGTGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29843744 246 + 173848474 AAGAGCTCAAGAATGGCCTCTAAGAACCCACAAGGAAAGGCCCCCAGAAAATTCACGAGAATGTTTGCCCTCCAAG--CTCAGTCTTGACTTTTTCATTTCCTTCTAACAGACCCAGTAGCTCTTCATTAAAGAGTGTTCTCAAAAA-------ACAGACCTTAGAAATTCAGAATCTTAAAATTTCAAATTTTCTCAAAA-TATACTATCCAATTTCTTACTAAAAACTGAAATCACATAGCAAACACGTGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5646551 246 +   6154872 AAGAGCTCAAGAATGGCCTCTAAGAACCCACAAGGAAAGGCCCCCAGAAAATTCACGAGAATGTTTGCCCTCCAAG--CTCAGTCTTGACTCTTTCATTTCCTTCTAACAGACCCAGTAGCTCTTCATTAAAGAGTGTTCTCAAAAA-------GGAGACCTTAGAAATTCAGAATCTTAAAATTTCAAATTTTCTCAAAA-TATACTATCCAATTTCTTACTAAAAACTGAAATCACATAGTAAACACGTGAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29872527 246 + 172585720 AAGAGCTTAAGAATGGCCTGTAAGAACTCACAAGGAAAGGCCCCCAGAAAATTCATGAGAATGTGTGCCCTCCAAGCTCTCAGTCTTGACTTTTTCACTTCCTTCTAGGGGACCCACTAGCTCTTCATTAAAGAGTGTTCTCGAAAA-------AGAGGCCTTAGAAATTCAGAATCTTAAAATTTCAAATTTCCTCAAAA-TATACTATCCAATTCCTTA-TAAAAACTGAAATCACATAGCAAACATGTG-AAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29535501 246 - 170955103 AAGAGCTTAAGAATGGCCTGTAAGAACTCACAAGGAAAGGCCCCCAGAAAATTCATGAGAATGTGTGCCCTCCAAGATCTCAGTCTTGACTTTTTCACTTCCTTCTAGGGGACCCACTAGCTCTTCATTAAAGAGTGTTCTCGAAAA-------AGAGGCCTTAGAAATTCAGAATCTTAAAATTTCAAATTTCCTCAAAA-TATACTATCCAATTCCTTA-TAAAAACTGAAATCACATAGCAAACATGTG-AAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2521918 246 -   2996164 AAGAGCTTAAGAATGGCCTATAAGAACCCACAAGGGAAGGCCCCCAGAAAATTCACGAGAATGTGTGCCCTCCAAGCTCTCAGTCTTGACTTTTTCACTTCCTTCTAGGGAACCCACTAGCTCTTCATTAAAGAGTGTTCTCAAAAA-------AGAGGCCTTAGAAATTAAGAATCTTAAAATTTCAAATTTCCTCAAAA-TATACTATCCAATTCCTTA-TAAAAACTGAAATCACATAGCAAACATGTG-AAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     274273 246 +    766320 AAGAGCTTAAGAATGGCCTATAAGAACCCACAAGGAAAAGTCCCCAGAAAATTCACGAGAATGTGTGCCCTCCAAGCTCTCAGTCTTGACTTTTTCACTTCCTTCTAAGGGACCCACTAGCTCTTCATTAAAGAGTGTTCTCAAAAA-------AGAGGCGTTAGAAATTCAGAATCTTAAAATTTCAAATTTCCTCAAAA-TATACTATCCAATTCCTTA-TAAAAACTGAAATCACATAGCAAACATGTG-AAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28776496 246 -  71996105 AAGAGCTTAAGAATGGCCTATAAGAACCCACAAGGGAAGGCCCCCAGAAAATTCACGAGAATGTGTGCCCTCCAAGCTCTCAGTCTTGACTTTTTCACTTCCTTCTAGGGGACCCACTAGCTCTTCATTAAAGAGTGTTCTCAAAAA-------AGAGGCCTTAGAAATTCAGAAACTTAAAATTTTAAATTTCCTCAAAA-TATACTATCCAATTCCTTA-TAAAAACTGAAATCACATAGCAAACATGTG-AAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     258520 246 -    352859 AAGAGCTTAAGAATGGCCTGTAAGAACTCACAAGGAAAGGCCCCCAGAAAATTCATGAGAATGTGTGCCCTCCAAGCTCTCAGTCTTGACTTTTTCACTTCCTTCTAGGGGACCCACTAGCTCTTCATTAAAGAGTGTTCTCGAAAA-------AGAGGCCTTAGAAATTCAGAATCTTAAAATTTCAAATTTCCTCAAAA-TATACTATCCAATTCCTTA-TAAAAACTGAAATCACATAGCAAACATGTG-AAA
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     385025 247 +    730504 AAGAGCTCAAGAACGGCCTCTAAGGACCCGCAAGGAAAGCCCCCCA-AAAATTCATAAGAAAGTGTGCTTTCTAGGCTTTCAGTCTTGACTTCTTCCCTTCCTTCTAGGGGACCCAATACCTCTTTATTAAAGAGTGTTCTCAAAAA-------TGGGATCTTACAAATTCAGAATCTTTAAATTGCAAGGATGTTCAAAAGTATACTATCCAATCCCTTACTTCTAACTAAAATCACATAACAAGTTTATA-GAA
i proCoq1.NW_012152574v1   I 548 C 0
s dasNov3.JH570741           496672 250 +   1532071 AAGCTGTCAAGAATGGCCAGGAGGAACCCTTAAGCAAAGGCTTCTAGAAAATTCTTAAGAAAGGTTTTCTCTTAGACTCCACATTGTGATCTCTTCTCTTCCTTCTAAGGGACACAGT-GCCTTTTATTAAAGGGTGTTCTAAAAAAAAAAAAGAGAGATC-TGGGAATACAGATTCTCCAAAACACAAAGGTT-TCAAAG-TATATCATGCAATCCCTTACTTGTAACTGAAATCACACAGCGAACATGTA-GA-
i dasNov3.JH570741         C 0 I 26
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2014336   6 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=515469.000000
s hg38.chr6_GL000254v2_alt   633699 113 +   4827813 TCAGTGTGGCTAAAGCTCAATCAATAATAGCTAGCATGCAAGGTTATTAGATCCACATGAAAGATGGTTTCTTGTGAGAAAGTCACACAAAGTGTGTTCCTGATACTATTCTC
s panTro5.chr6             29605766 113 + 175400573 TCAGTGTGGCTAAAGCTCAATCAATCATAGCTAGCATGCAAGGATATTAGATCCACATGAAAGATGGTTTCTTGTGAGAAAGTCACACAAAGTGTGTTCCTGATACTATTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29843990 113 + 173848474 TCAGTGTGGCTAAAGCTCAATCAATCATAGCTAGCATGCAAGGATATTAGATCCACATGAAAGATGGTTTCTTGTGAGAAAGTCACACAAAGTGTGTTCCTGATACTATTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5646797 113 +   6154872 TCAGTGTGGCTAAAGCTCAATCAATAATAGCTAGCATGCAAGGATATTAGATCCACATGAAAGATGGTTTCTTGTGAGAAAGTCACACAAAGTGTGTTCCTGATACTATTCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29872773 113 + 172585720 TCAATGTGGCAAAAGCTCAATCAATAATAGCTAGCATGCTAGGATATTAGATCCACATGAAAGATTGCTTCTTGTGAGAAAGTCACACAAAGTGTGTTCCTGATACTATTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29535747 113 - 170955103 TCAATGTGGCAAAAGCTCAATCAATAATAGCTAGCATGCAAGGATATTAGATCCACATGAAAGATTGCTTCTTGTGAGAAACTCACACAAAGTGTGTTCCTGATACTATTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2522164 113 -   2996164 TCAATGTGGCAAAAGCTCAATCAATAATAGCTAGCATGCTAGGATATTAGATCCACATGAAAGATTGTTTCTTGTGAAAAAGTCACACAAAGTGTGTTCCTGATACTATTCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     274519 113 +    766320 TCAATGTGGCAAAAGCTCAATCAATAATAGCTAGCATGCAAGGATATTAGATCCACATGAAAGATTGTTTCTTGTGAGAAAGTCACACAAAGTGTGTTCCTGATACTATTCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28776742 113 -  71996105 TCAATGTGGCAAAAGCTCAATCAATAATAGCTAGCATGCAAGGATATTAGATCCACATGAAAGATTGCTTCTTGTGAGAAAGTCACACAAAGTGTATTCCTGATACTATTCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     258766 113 -    352859 TCAATGTGGCAAAAGCTCAATCAATAATAGCTAGCATGCAAGGATATTAGATCTACATGAAAGATTGCTTCTTGTGAGAAAGTCACACAAAGTGTGTTCCTGATACTATTCTC
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     385272 113 +    730504 TGAGTATACTCAGAGTTCTATAAATGGTAGCTGCCATGCAAGCATATTAGATACAAATGCAAGATTGTTTCTTCTGAGAAAATCACACAAAGTGTGTTCCTGATACTATTATC
i proCoq1.NW_012152574v1   C 0 C 0
e dasNov3.JH570741           496922  26 +   1532071 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2014336   6 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=134662.000000
s hg38.chr6_GL000254v2_alt   633812 23 +   4827813 TGCAGTCCAGTGGCATTTTAGTC
s panTro5.chr6             29605879 23 + 175400573 TGCAGTCCAGTGGCATTTTAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29844103 23 + 173848474 TGCAGTCCAGTGGCATTTTAGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5646910 23 +   6154872 TGCAGTCCAGTGGCATTTTAGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29872886 23 + 172585720 TGCAATCCAGTGGCATTTTAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29535860 23 - 170955103 TGCAATCCAGTGACATTTTAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2522277 23 -   2996164 TGCAATCCAGTGGCATTTTAGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     274632 23 +    766320 TGCAATCCAGTGGCATTTTAGTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28776855 23 -  71996105 TGCAATCCAGTGGCATTTTAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     258879 23 -    352859 TGCAATCCAGTGGCATTTTAGTC
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     385385 23 +    730504 TGCAATCCAGTGGCATTTTAGTT
i proCoq1.NW_012152574v1   C 0 C 0
s dasNov3.JH570741           496948 23 +   1532071 TGCAGTCAAGTGGCATTTTAGTC
i dasNov3.JH570741         I 26 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2014336  6 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=22854.000000
s hg38.chr6_GL000254v2_alt   633835 4 +   4827813 TCTT----
s panTro5.chr6             29605902 4 + 175400573 TCTT----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29844126 4 + 173848474 TCTT----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5646933 4 +   6154872 TCTT----
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29872909 4 + 172585720 TCTT----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29535883 4 - 170955103 TCTT----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2522300 4 -   2996164 TCTT----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     274655 4 +    766320 TCTT----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28776878 4 -  71996105 TCTT----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     258902 4 -    352859 TCTT----
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     385408 4 +    730504 TCTt----
i proCoq1.NW_012152574v1   C 0 I 133
s otoGar3.GL873742          2014342 4 -   2232465 TCTT----
i otoGar3.GL873742         I 6 C 0
s dasNov3.JH570741           496971 8 +   1532071 TCTTCCTT
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=20375.000000
s hg38.chr6_GL000254v2_alt   633839 5 +   4827813 TTTGC
s panTro5.chr6             29605906 5 + 175400573 TTTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29844130 5 + 173848474 TTTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5646937 5 +   6154872 TTTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29872913 5 + 172585720 TTTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29535887 5 - 170955103 TTTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2522304 5 -   2996164 TTTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     274659 5 +    766320 TTTGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28776882 5 -  71996105 TTTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     258906 5 -    352859 TTTGT
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2014346 5 -   2232465 TTCAG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           496979 5 +   1532071 TTCAT
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     385412 133 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=3313953.000000
s hg38.chr6_GL000254v2_alt   633844 641 +   4827813 AGAAT-AAATACACTGTCCTTTATTTAATAAAAAATCGGCAAAC------CAGCAGAGGGCTATTCTGAATGACATAAAAATTACCCAAAATGAAAGAAGCTTCCTGATT--CACA--TACTCAGTAGGCTGAT-------TGTCACCCAAAGCA---TGGGACAGACAATTTTATTATTCCCTCCTTTGGAACTCCTCAGGTCATTACACTTCCATCTCCTACACAGTTAGTCTCATATCCAAAAAGCAAG--ACAGAAAAGTGTATCTCTAAGAGCAATGAAGCTA-TAGTTAAGCAATT-AAAAATACTTACTCACTCACCTGTGATTGGAGATATTG---AGCAGAGATTACCATTCAGACTCTGAGAGACTGATATGGGGCTGTTTTTAAGAATACAACGAAGTAACACAAAATAATGTTCCCTACAGAGTCTGTGCTGATAAACTTCTGAGTGATGGGTTTTCTAGGTGAGTGCCAAGACTCTACTCAGTCCCTGAAGGCCAGTGCATGGGACTGGAGTGAGTAAGGAAAATGCCCTTTGGATTAAGAAGATCCCCACATCTTATGGGAATATTTCAAGAGCCTCGGAGACACACGTTGGGGATCTTCAAGCACAAGTCCTGAGACTCACTACTTCTGG-TTCCTGCTTCAACCCCTGAGCATC
s panTro5.chr6             29605911 613 + 175400573 AGAAT-AAATACACTGTCCTTTATTTAATAAAAAATCGGCAAAC------CAGCAGAGGGCTATTCTGAATGATATAAAAATTACCCAAAATGAAAGAAGCTTCCTGATT--CACA--TACTCAGTAGGCTGAT-------TGTCACCCAAAGCA---TGGGACAGACAATTTTATTATTCCCTCCTTTGGAACCCCTCAGGTCATTACACTTCCATCTCCTACACAGTTAGTCTCATATCCAAAAAGCAAG--ACAGAAAAGTGTATCTGTAAGAGCAATGAAGCTA-TAGTTAAGCAATT-AAAAATACTTACTCACTCACCTGTGATTGGAGATATTG---AGCAGAGATTACCATTCAGACTCTGAGAGACTGATATGGGGCTGCTTTTATGAACACAACGAAGTAACACAAAATAATGTTCCCTACAGAGTCTGTGCTGATAAACTTCTGAGTGATGGGTTTTCTAGGTGAGTGCCAAGACTCTACTCAGTCCCTGAAGGCCAGTGCATGGGACTGGAGTGAGTAAGGAAAATGCCCTTTGGATTAAGAAGATCCCCACATCTTATGGGAATATTTCAAGAGCCTCGGAGACACACCTTGGGGATCTTCAAGCACAAGTCCTG-----------------------------ACCCCTGAGCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29844135 613 + 173848474 AGAAT-AAATACACTGTCCTTTATTTAATAAAAAATCGGCAAAC------CAGCAGAGGGCTATTCTGAATGATATAAAAATTACCCAAAATGAAAGAAGCTTCCTGATT--CACA--TACTCAGTAGGCTGAT-------TGTCACCCAAAGCA---TGGGACAGACAATTTTATTATTCCCTCCTTTGGAACCCCTCAGGTCATTACACTTCCATCTCCTACACAGTTAGTCTCATATCCAAAAAGCAAG--ACAGAAAAGTGTATCTGTAAGAGCAATGAAGCTA-TAGTTAAGCAATT-AAAAATACTTACTCACTCACCTGTGATTGGAGATATTG---AGCAGAGATTACCATTCAGACTCTGAGAGACTGATATGGGGCTGCTTTTATGAACACAACGAAGTAACACAAAATAATGTTCCCTACAGAGTCTGTGCTGATAAACTTCTGAGTGATGGGTTTTCTAGGTGAGTGCCAAGACTCTACTCAGTCCCTGAAGGCCAGTGCATGGGACTGGAGTGAGTAAGGAAAATGCCCTTTGGATTAAGAAGATCCCCACATCTTATGGGAATATTTCAAGAGCCTCGGAGACACACCTTGGGGATCTTCAAGCACAAGTCCTG-----------------------------ACCCCTGAGCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5646942 641 +   6154872 AGAAT-AAATACACTGTCCTTTATTTAATAAAAAATCGGCAAAC------CAGCAGAGGGCTATTCTGAATGATATAAAAATTACCCAAAATGAAAGAAGCTTCCTGATT--CACA--TACTCAGTAGGCTGAT-------TGTCACCCAAAGCA---TGGGACAGACAATTTTATTATTCCCTCCTTTGGAACCCCTCAGGTCATTACACTTCCATCTCCTACACAGTTAGTCTCATATCCAAAAAGCAAG--ACAGAAAAGTGTATCTGTAAGAGCAATGAAGCTA-TAGTTAAGCAATT-AAAAATACTTACTCACTCACCTGTGATTGGAGATATTG---AGCAGAGATTACCATTCAGACTCTGAGAGACTGATATGGGGCTGCTTTTATGAACACAACGAAGTAACACAAAATAATGTTCCCTACAGAGTCTGTGCTGATAAACTTCTGAGTGATGGGTTTTCTAGGTGAGTGCCAAGACTCTACTCAGTCCCTGAAGGCCAGTGCATGGGACTGGAGTGAGTAACGAAAATGCCCTTTGGATTAAGAAGATCCCCACATCTTACGGGAATATTTCAAGAGCCTCGGAGACACACCTTGGAGATCTTCAAGCACAAGTCCTGAGACTCACTACTTCTGG-TTCCTGCTTCAACCCCTGAGCATC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29872918 642 + 172585720 AGAAT-AAATGCACTGTCCTTTATTTAATAAAGAATCAGCAAAA------CAGCAGAAGGCTATTCTGAATGATATAAAAATTACCCAAAATGAAAGAAGCTTCCTGATT--CACA--TACTCAATAGG-TGAG-------TGTCACCCAAAGCA---TGGGACAGACAATTTTATTATTCCCTCCTTTGGAACTCCTCAGGTCATTACACTTCCATCTCCTACACACTTAGTCTCACATCCAAAAAGCAAGACACAGAAAAGTGTATCTCTAAGAGCAATGAGGCTA-TAGTTAAGCAATT-AAAAATACTTACTTACTCACCTGTGATTGGAGATATTG---AGCAGAGATTACCATTTAGACTTTAAGAGACTGATATGGGGCTGCTTTTGTGAACACAAAGAAGTAACACAAAATAATGTTGCCTATAGAGTCTGTGCTGGTAAACTTCTGAGCGATGGGTTTTCTAGCTGAGTGCCAAGAGTCTACTCAGTTCCTAAAGGCCAATGCATGGGACTGGAGTGAGTAAGGAAAATGCCCTTTGGATTAAGAAGATCCTCACATCTTATGGGAATATTTCAAGAGCCTCGGAGACACACCTTGGGGATCTTTAAGAACAGGTCCTGAGACTCACTACTTCTGA-TTCCTGCCTCAACTCCTGAGCATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29535892 643 - 170955103 AGAAT-AAATGCACTGTCCTTTATTTAATAAAGAATCAGCAAAA------CAGCAGAAGGCTATTCTGAATGATATAAAAATTACCCAAAATGAAAGAAGCTTCCTGATT--CACA--TACTCAATAGGTTGAG-------TGTCACCCAAAGCA---TGGGACAGACAATTTTATTATTCCCTCCTTTGGAACTCCTCAGGTCATTACACTTCCATCTCCTACACACTTAGTCTCACATCCAAAAAGCAAGACACAGAAAAGTGTATCTCTAAGAGCAATGAGGCTA-TAGTTAAGCAATT-AAAAATACTTACTTACTCACCTGTGATTGGAGATATTG---AGCAGAGATTACCATTTAGACTTTAAGAGACTGATATGGGGCTGCTTTTGTGAACACAAAGAAGTAACACAAAATAATGTTGCCTATAGAGTCTGTGCTGGTAAACTTCTGAGCGATGGGTTTTCTAGCTGAGTGCCAAGAGTCTACTCAGTTCCTAAAGGCCAATGCATGGGACTGGAGTGAGTAAGGAAAATGCCCTTTGGATTAAGAAGATCCTTACATCTTATGGGAATATTTCAAGAGCCTCGGAGACACACCTTGGGGATCTTTAAGAACAGGTCCTGAGACTCACTACTTCTGA-TTCCTGCCTCAACTCCTGAGCATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2522309 643 -   2996164 AGAAT-AAATGCACTGTCCTTTATTTAATAAAGAATCAGCAAAC------CAGCAGAAGGCTATTCTGAATGATATAAAAATTACCCAAAATGAAAGAAGCTTCCTGATT--CACA--TACTCAATAGGTTGAG-------TGTCACCCAAAGCA---TGGGACAGACAATTTTATTATTTCCTCCTTTGGAACTCCTCAGGTCATTACACTTCCATCTCCTACACACTTAGTCTCACATCCAAAAAGCAAGACACAGAAAAGTGTATCTCTAAGAGCAATGAGGCTA-TAGTTAAGCAATT-TAAAATACTTACTTACTCACCTGTGATTGGAGATATTG---AGCAGAGATTACCATTTAGACTTTAAGAGACTGATATGGGGCTGCTTTTATGAACACAAAGAAGTAACACAAAATAATGTTCCCTATAGAGTCTGTGCTGGTAAACTTCTGAGCGATGGGTTTTCTAGCTGAGTGCCAAGAGTCTACTCAGTTCCTAAAGGCCAATGCAGGAGACTGGAGTGAGTAAGGAAAATGCCCTTTGGATTAAGAAGATCCTCACATCTTATGGGAATATTTCAAGAGCCTCGGAGACACACCTTGGGGATCTTCAAGAACAGGTCCTGAGACTCACTACTTCTGA-TTCCTGCCTCAACTCCTGAGCATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     274664 632 +    766320 AGAAT-AAATGCACTGTCCTTTATTTAATAAAGAATCAGCAAGC------CA-------GCTATTCTGAATGATATAAAAATTACCCAAAATGAAAGAAGCTTCCTGATT--CACA--TACTCAATAGGTTGAG-------TGTCACCCAAAGCA---TGGGACAGACAATTTTATTATTCCCTCCTTTGGAACTCCTCAGGTCATTACACTTCCATCTCCTACACACTTAGTCTCACATCCAAAAAGCAAGACACAGAAAAGTGTATCTCTAAGAGCAATGAGGCTA-TAGTTTAGCAATT-AAAAATACTTACTT----ACCTGTGATTGGTGATATCG---AGCAGAGATTACCATTTAGACTTTAAGAGACTGATATGGGGTTGCTTTTATGAACACAAAGAAGTAACACAAAATAATGTTCCCTATAGAGTCTGTGCTGGTAAACTTCTGAGTGATGGGTTTTCTAGCTGAGTGCCAAGACTCTACTCAGTTCCTAAAGGCCAATGCATGGGACTGGAGTGAGTAAGGAAAATGCCCTTTGGATTAAGAAGATCCTCACATCTTATGGGAATATTTCAAGAGCCTCGGAGACACACCTTGGGGATCTTCAAGAACAGGTCCTGAGACTCACTACTTCTGA-TTCCTGCCTCAACCCCTGAGCATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28776887 634 -  71996105 AGAAT-AAATGCACTGTCCTTTATTTAATAAAGAATCAGCAAAA------CAGCAGAAGGCTATTCTGAATGATATAAAAATTACCCAAAATGAAAGAAGCTTCCTGATT--CACA--TACTCAATAGGTTGAG-------TGTCACCCAAAGCA---TGGGACAGACAATTTTATTATTCCCTCCTTTGGAACTCCTCAGGTCATTACACTTCCATCTCCTACACACTTAGTCTCACATCCAAAAAGCAAGACACAGAAAAGTGTATCTCTAAGAGCAATGAGGCTA-TAGTTAAGCAATT-AAAAA----TACTTACTCACCTGTGATTGGTGATATCG---GGCAGAGATTACCATTTAGACTTTAAGAGACTGATATAGGGCTGCTTTTATGAACACAAAGAAGTAACACAAAATAATGTTCCCTATAGAGTCTGTGCTGGTAAACTTCTGAGCGATGGGTTTTCTAGGTGAGTGCCAAGACTCTACTCAGTTCCTAAAGGCCAATGCATGGGACTG----GAGTAAGGAAAATGCCCTTTGGATTAAGAAGATCCTCACATCTTATGGGAATATTTCAAGAGCCTCGGAGACACACCTTGGGGATCTTCAAGAACAGGTCCTGAGACTCACTACTTCT-A-TTCCTGCCTCAACCCCTGAGCATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     258911 643 -    352859 AGAAT-AAATGCACTGTCCTTTATTTAATAAAGAATCAGCAAAC------CAGCAGAAGGCTATTCTGAATGATATAAAAATTACCCAAAATGAAAGAAGCTTCCTGATT--CACA--TACTCAATAGGTTGAG-------TGTCACCCAAAGCA---TGGGACAGACAATTTTATTATTCCCTCCTTTGGAACTCCTCAGGTCATTACACTTCCATCTCCTACACACTTAGTCTCACATCCAAAAAGCAAGACACAGAAAAGTGTATCTCTAAGAGCAATGAGGCTA-TAGTTAAGCAATT-AAAAATACTTACTTACTCACCTGTGATTGGAGATATCG---AGCAGAGATTACCATTTAGACTTTAAGAGACTGATATGGGGCTGCTTTTATGAGCACAAAGAAGTAACACAAAATAATGTTCCCTATAGAGTCTGTGCTGGTAAACTTCTGAGTGATAGGCTTTCTAGCTGAGTGCCAAGACTCTACTCAGTTCCTAAAGGCCAATGCATGGGACTGGAGTGAGTAAGGAAAATGCCCTTTGGATTAAGAAGATCCTCACATCTTATGGGAATATTTCAAGAGCCTCGGAGACACACCTTGGGGATCTTCAAGAACAGGTCCTGAGACTCACTACTTCTGA-TTCCTGCCTCAACCCCTGAGCATC
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     385545 641 +    730504 AGAAT-AAAGACACTGTCCTTTATTTAATAAAACATAAGCAAACGAGTATTAGTAGAGGATCATTCTGAGTGACATCGAAGTTACCCAAAATGAAGGAAGCTCCCTGGTTTGCACA--AACTCAATAGGTTGAG-------TGCCACCCAAAGTA---TGGGGCAGACAGTTTTATTATTCCCTCACTTGGAATCCCTCGGGTCATTATACTTTCA---TCTACCCACTTTGTCTCTCCTCCAAAGAGCAAGACATACAAAAATGTATCTCTAAGAGTAACGAAGCTA-TAGTTAAGCAATTAAAAAA----TACTTACTCACCTGTGATCAAAAATATTG---AGCAGAGATTACCATTCAGACTCCTAGAGCCTGATGTGGGGCTGCTTTTGTGAACATAAGGAAGTGATATATAGTAATGGTCCCTGGAGAGACTGCGCTAATAGTCT---GAGTGACAGACCTTCCAGATGACTGCCAAGAGTCTCCTCAATCCCTGAAGGCCAGTGCATGGGACTGGAGTGAGCAAAGACAATGTCCTCTGGATGCAAAATATCCCCACGTC-TGTGGGAATCTATCAAGGGCCCTGGAGACACACCACTGGGACCTCTGAGCACAGGTCCCGAGACTTGCTTCTTCTGA-TTCCTGCTTCAACCCCTGAGCATC
i proCoq1.NW_012152574v1   I 133 I 486
s otoGar3.GL873742          2014351 653 -   2232465 AGAAT-AAAGTCACTGTTCTTTATTTAATAAAGGATAAACAAATATATATCAGTAAAAAATCATTTTTAGTGACATTGAAATTATCCTAAATGAAGGAAGCTCTCTGATTTACACA--AACTTAATAGGTTGAGTAAATTTTGTCCCCTAAAATA---TGGGACAAAAAGTTTTATTA-TCCCTCTTTTGGGATCCTTCAAATCATTTTATTTTTACCTCCTACCCACTTTGTCTCTACTCCAAA-AGCAAGGCATAGAAAAGTATATCACTAAGAGCAATGAAGCTATTAGTCAAGCAACT-AAAAA----TACTCATTTACCTGTGACTAAAAATATTG---AATAGAGATTACCATTCAGACCCCAAAAGCCTGATGTGGGGCTGCTTTTATGAACACAAAGAGGTGCTATTTGATAATGGTCCCTCCAGAGCCTGTGCTGATAGTCTTCGGAGTGATGGATCTTCCTGATGAGTGCCAAGAGTCTCCTCAATCCCTGAAGGTGGGTGCATGGGACTGGAGTGAGCAAAGACAATGCCCTCTGGATATAAAATATCCACACATC-TATGAGAATCTTTCCAGGGCCCTGGAGACAAACTTCTGAGGCCTCTGAGCACAGGTCCAGGGGCTTGCTTCTTCTGATTTCCTGTCTCAACCCGTGAGCATC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           496984 567 +   1532071 ATAATGAAAGAGCCTGTCCTTTATTTAATAGAGAATCATCAGAA------CAGT-----------------------GAAATTACCTGCAGTGAAGGAAGC--CCCGGTT--CACAGGCACTCAGCCCGCTC---------CACCACCGAGAACAGCTCGAGGC----------------CCCTCCCCAG--AGCCCACGGGCCCTT--ACTCTCTGCTCCCACCC--TTAGTCTCTCCTCCAAAGACCAAG-CACAGGAAAGTGTCTCTCTCAGAGCAATGGAACCA-CAGCCAAGCAGTT-AAACATGCTTGCTCACCTACTTGTGATAGAAAACGCTGCCAAAACGAGACT-CCACCCAGGCTCCTGGCGCCTGCTGTAGGA-GGCTTTTATGAGCTGGAGGAAGGGGCA---GGGCAGGGTCCCTG--GGGGACATGCTGAAGGCTCCCGCTGTGAGGGCTCCCCCAGCTGAGCGCCAAGCATCTCTTTAGCCC---AAAGGCAGCGCGTGGGACCAGAGAGGGAAAGGACTAGGCCC---GAAT--GCCAGGCCCCCACTTCTGGAGGAACCCTTCCCGGGGCCC---AGACAAGCCGCCTGGGCCCT---------GGCTGAGGCCCCACGACTTGGAA-CTC--------AGCCCTGAGCACC
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=285282.000000
s hg38.chr6_GL000254v2_alt   634485 70 +   4827813 TATTTGTCTTCTAGTGGCTCTGTTGCCATCATAATTATGCTTCAGAAAGTGTCCTGTGGAGTCCGACCTG
s panTro5.chr6             29606524 70 + 175400573 TATTTGTCTTCTAGTGGCTCTGTTGCCATCATAATTATGCTTCAGGAAGTGTCCTGTGGAGTCCGACCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29844748 70 + 173848474 TATTTGTCTTCTAGTGGCTCTGTTGCCATCATAATTATGCTTCAGGAAGTGTCCTGTGGAGTCCGACCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5647583 70 +   6154872 TATTTGTCTTCTAGTGGCTCTGTTGCCATCATAATTATGCTTCAGGAAGTGTCCTGTGGAGTCCGACCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29873560 70 + 172585720 TAGTTGTCTTCTAGTGGTTCTGTTACCATAATAATTATGCTTCAGGAAGTCTCCTGTGGAATCTGACCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29536535 70 - 170955103 TAGTTGTCTTCTAGTGGTTCTGTTACCATAATAATTATGCTTCAGGAAGTCTCCTGTGGAATCTGACCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2522952 70 -   2996164 TAGTTGTGTTCTAGTGGTTCTGTTACCATAATAATTATGCCTCAGGAAGTCTCCTGTGGAATCCAACCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     275296 70 +    766320 TAGTTGTCTTCTAGTGGTTCTGTTACCTTCATAATTATGCTTCAGGAAGTCTCCTGTGGAATCCGACCTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28777521 70 -  71996105 TAGTTGTCTTCTAGTGGTTCTGTTACTATAATAATTATGCTTCAGGAAGTCTCCTGTGGAATCCGACCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     259554 70 -    352859 TAGTTGTCTTCTAGTGGTTCTGTTACCATCATAATTATGCTTCAGGAAGTCTCCTGTGGAATCTGACCTG
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2015004 70 -   2232465 AGGTTGTCCTCCAGCAGCTCTGTTGCCATTATCATTCTGCTTCGAAAAGACTCCTCTGTAATCAAGACTG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           497551 35 +   1532071 --CCTGTCTCCC--CGGCTCCGGGGCCATGGAAACTCTG-------------------------------
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     386186 486 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=163423.000000
s hg38.chr6_GL000254v2_alt   634555 34 +   4827813 CTCCAGGTGGACCACTACCTCCTGGCCCACATCT
s panTro5.chr6             29606594 34 + 175400573 CTCCAGGTGGACCACTACCTCCTGGCCCACATCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29844818 34 + 173848474 CTCCAGGTGGACCACTACCTCCTGGCCCACATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5647653 34 +   6154872 CTCCAGGTGGACCACTACCTCCTGGCCCACATCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29873630 34 + 172585720 CTCCAGGTGGACCACTACCTCTTGGCTCACATCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29536605 34 - 170955103 CTCCAGGTGGACCACTACCTCTTGGCTCACATCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2523022 34 -   2996164 CTCCAGGTGGACCACTACCTCTTGGCTCACATCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     275366 34 +    766320 CTCCAGGTGGACCACTACCTCTTGGTTCACATCG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28777591 34 -  71996105 CTCCAGGTGGACCACTACCTCTTGGCTCACATCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     259624 34 -    352859 CTCCAGGTGGACCACTACCTCTTGGCTAACATCT
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     386672 34 +    730504 CTCCAGGTAGACCACTACCTCTGGGCCCACATCT
i proCoq1.NW_012152574v1   I 486 I 6348
s otoGar3.GL873742          2015074 30 -   2232465 CT----ATAGATCACTACAGTGTAGTGTAGATCA
i otoGar3.GL873742         C 0 I 1
s dasNov3.JH570741           497586 25 +   1532071 CTCCACCTTGGCCCCTGC------GACCACA---
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=452312.000000
s hg38.chr6_GL000254v2_alt   634589 108 +   4827813 GTCT------AGTGAGAAACAACCCACATGCTTCCCCTATTAACACAGGAAATGCAGTTCTCTAGAT-TTTGCTTCTTGGCCATGTAAGAA-A----TATCAGTCTTTGGACTCCAAAAT
s panTro5.chr6             29606628 108 + 175400573 GTCT------AGTGAGAAACAACCCACATGCTTCCCCTATTAACACAGGAAATGCAGTTCTCTAGAT-TTTGCTTCTTGGCCATGTAAGAA-A----TATCAGTCTTTGGACTCCAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29844852 108 + 173848474 GTCT------AGTGAGAAACAACCCACATGCTTCCCCTATTAACACAGGAAATGCAGTTCTCTAGAT-TTTGCTTCTTGGCCATGTAAGAA-A----TATCAGTCTTTGGACTCCAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5647687 108 +   6154872 GTCT------AGTGAGAAACAACCCACATGCTTCCCCTATTAACACAGGAAATGCAGTTCTCTGGAT-TTTGCTTCTTGGCCATGTAAGAA-A----TATCAGTCTTTGGACTGCAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29873664 107 + 172585720 GTCC------AGTGAGAAACAACCCACATCCTTTCCCTATTATCAGAGGAAATGCAGTTCTCTAGAT-TTTGCTTCTTGGCCACATAAGAA-A----TATCAGTCTTT-GACTCCAAAAT
i rheMac8.chr4             C 0 I 60
s macFas5.chr4             29536639 107 - 170955103 GTCC------AGTGAGAAACAACCCACATCCTTTCCCTATTATCAGAGGAAATGCAGTTCTCTAGAT-TTTGCTTCTTGGCCACATAAGAA-A----TATCAGTCTTT-GACTCCAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2523056 107 -   2996164 GTCC------AATGAGAAACAACCCATATCGTTTCCCTATTATCAGAGGAAATGCAGTTCTCTAGAT-TTTGCTTCTTGGCCACATAAGAA-A----TATCAGTCTTT-GACTCCAAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     275400 107 +    766320 GTCC------AGTGAGAAACAACCCATATCCTTTCCCTATTATCAGAGGAAATGCAGTTCTCTAGAT-TTTGCTTCTCGGTCACATAAGAA-A----TATCAGTCTTT-GACTCCAAAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28777625 107 -  71996105 GTCC------AATGAGAAACAACCCACATCCTTTCCCTATTATCAGAGGAAATGCAGTCCTCTAGAT-TTTGCTTCTCGGCCACATAAGAA-A----TATCAGTCTTT-GACTCCAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     259658 107 -    352859 ATCC------AATGAGAAACAACCCACATCCTTTCCCTATTATCAGAGGAAATGCAGTTCTCTAGAT-TTTGCTTCTCGGCCACATAAGAA-A----TATCAGTCTTT-GACTCCAAAAT
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2015105 118 -   2232465 ATCTCACCAAAGGAGGGGGGAACCTGCAAATTTTTCCTATTATCAGAGAAAATGCAGTTGTCTAGTC-TTTGCTACTCTGTCACATTGGGA-AATAGCATTACTCTTCGGACTCTACAAT
i otoGar3.GL873742         I 1 C 0
s dasNov3.JH570741           497611 103 +   1532071 -------------GAAGAGCCTCCTTCGTCCTCTCCCCGTCGCCAGAGCACGCGCGCTCCCCCAGCTCCTTGCTGCTCGGCCACATCAGGGCG----CATCAGTCCTTGGCTTCTCAGAC
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     386706 6348 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=182132.000000
s hg38.chr6_GL000254v2_alt   634697 61 +   4827813 TCCAGATGTAGAAATCAAGCTCTCTAACTGGT-------TTTTCTCTCAGCTTAAATTAGGAGAAAGC
s panTro5.chr6             29606736 61 + 175400573 TCCAGATGTAGAAATCAAGCTCTCTAACTGGT-------TTTTCTCTCAGCTTAAATTAGGAGAAAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29844960 61 + 173848474 TCCAGATGTAGAAATCAAGCTCTCTAACTGGT-------TTTTCTCTCAGCTTAAATTAGGAGAAAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5647795 61 +   6154872 TCCAGGTGTAGAAATCAAGCTCTCTAACTGGT-------TTTTCTCTCAGCTTAAATTAGGAGAAAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29536746 60 - 170955103 GCTGG-------AGTCAAACTCTCTAACTGGTTATCTTCTTCTCTCTCAGTTTAAATTAGGGAAAAC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2523163 68 -   2996164 GCTGGATGTAGAAGTCAAACTGTCTAACTGGTTATCTTTTTCTCTCTCAGCTTAAATTAGGGGAAAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     275507 68 +    766320 GCTGGATGTAGAAGTCAAACTCTCTAACTGGTTATCTTTTTCTCTCTCAGCTTAAATTAGGGGAAAGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28777732 68 -  71996105 GCTGGATGTAGAAGTCAAACTCTCTAACTGGTTATCTTTTTCTCTGTCAGCTTAAATTAGGGGAAAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     259765 68 -    352859 GCTGGATGTAGAAGTCAAACTCTCTAACTGGTTATCTTTTTCTCTCTCAGCTTAAATTAGGGAAAAGC
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2015223 63 -   2232465 CCCAAGGGTAGAAATCAAG----CTAAGTGGTTCTCTTTCGCTTTCTCAGCTTAAATTAGGAGAAGC-
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           497714 45 +   1532071 --------------TCGAGTTCCACAGCTAGTTCTCTTTTTCTCTC---------AATAAAAGGAAGC
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     386706 6348 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e rheMac8.chr4             29873771 60 + 172585720 I

a score=1911.000000
s hg38.chr6_GL000254v2_alt   634758 1 +   4827813 A
s panTro5.chr6             29606797 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29845021 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5647856 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29536806 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s otoGar3.GL873742          2015286 1 -   2232465 A
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           497759 1 +   1532071 A
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     386706 6348 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     259833 0 -    352859 C
e chlSab2.chr17            28777800 0 -  71996105 C
e cerAty1.NW_012002711v1     275575 0 +    766320 C
e macNem1.NW_012011356v1    2523231 0 -   2996164 C
e rheMac8.chr4             29873771 60 + 172585720 I

a score=91464.000000
s hg38.chr6_GL000254v2_alt   634759 122 +   4827813 TCCTCATTTCCTCCTGGAGGTGGGGGAAGCTTACATTGCACACTACTTCTCAC-------------------TGAAG---------AAATATTCTTCAGCCACTGAAGACTGATTAGTCCTCCAAATATCTATTCCTTTGCATGTTATGT
s panTro5.chr6             29606798 122 + 175400573 TCCTCATTTCCTCCTGGAGGTGGGGGAAGCTTACATTGCACACTACTTCTCAC-------------------TAAAG---------AAATATTCTTCAGCCACTGAAGACTGATTAGTCCTCCAAATATCTATTCCTTTGCATGTTATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29845022 122 + 173848474 TCCTCATTTCCTCCTGGAGGTGGGGGAAGCTTACATTGCACACTACTTCTCAC-------------------TAAAG---------AAATATTCTTCAGCCACTGAAGACTGATTAGTCCTCCAAATATCTATTCCTTTGCATGTTATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5647857 122 +   6154872 TCCTCATTTCCTCCTGGAGGTGGGGGAAGCTTACATTGCACACTACTTCTCAC-------------------TAAAG---------AAATATTCTTCAGCCACTGAAGACTGATTAGTCCTCCAAATATCTATTCCTTTTCATGTTATGT
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742          2015287 122 -   2232465 CCCTCTCTTCTTTCTAGAAGC-AAGGAATCTTACATAGCACACCA-TTCTCAT-------------------AAAAGAATTTTAAAAAGTACTCCTTAGACATTG------TATTAATCTCCTAAACAGC-ACTTCTTTGCAAGTTATGT
i otoGar3.GL873742         C 0 I 32674
s dasNov3.JH570741           497760 134 +   1532071 CCTGCATTTCCTTCTGGAGGT-GGGTAAGTTTGTACAATATACCAATTGTCACGtaaaataataaaataaaataaaa---------ataaaatCTTCCACCACCA------AATCAATCCCTTTCATATCCTCTGCTTTACAAGTGTTGC
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     386706 6348 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     259833   0 -    352859 C
e chlSab2.chr17            28777800   0 -  71996105 C
e cerAty1.NW_012002711v1     275575   0 +    766320 C
e macNem1.NW_012011356v1    2523231   0 -   2996164 C
e macFas5.chr4             29536807   0 - 170955103 C
e rheMac8.chr4             29873771  60 + 172585720 I

a score=5680.000000
s hg38.chr6_GL000254v2_alt   634881 13 +   4827813 GTTCTTGAAGATG
s panTro5.chr6             29606920 13 + 175400573 GTTCTTGAAGATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29845144 13 + 173848474 GTTCTTGAAGATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5647979 13 +   6154872 GTTCTTGAAGATG
i gorGor5.CYUI01015250v1   C 0 C 0
s dasNov3.JH570741           497894 11 +   1532071 GTGACTTAGGG--
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     386706 6348 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2015409 32674 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     259833  0 -    352859 C
e chlSab2.chr17            28777800  0 -  71996105 C
e cerAty1.NW_012002711v1     275575  0 +    766320 C
e macNem1.NW_012011356v1    2523231  0 -   2996164 C
e macFas5.chr4             29536807  0 - 170955103 C
e rheMac8.chr4             29873771 60 + 172585720 I

a score=21524.000000
s hg38.chr6_GL000254v2_alt   634894 26 +   4827813 TATCAAAAACTCACTAACGAATATAC
s panTro5.chr6             29606933 26 + 175400573 TATCAAAAACTCACTAACGAATATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29845157 26 + 173848474 TATCAAAAACTCACTAACGAATATAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5647992 26 +   6154872 TATCAAAAACTCACTAACGAATATAC
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742          2048083 22 -   2232465 TATCAACAACTCATT----AATCTAT
i otoGar3.GL873742         I 32674 C 0
s dasNov3.JH570741           497905 25 +   1532071 -ACCAACAGCTTGCTTTTGAATGTGC
i dasNov3.JH570741         C 0 I 32941
e proCoq1.NW_012152574v1     386706 6348 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     259833  0 -    352859 C
e chlSab2.chr17            28777800  0 -  71996105 C
e cerAty1.NW_012002711v1     275575  0 +    766320 C
e macNem1.NW_012011356v1    2523231  0 -   2996164 C
e macFas5.chr4             29536807  0 - 170955103 C
e rheMac8.chr4             29873771 60 + 172585720 I

a score=278661.000000
s hg38.chr6_GL000254v2_alt   634920 385 +   4827813 AGTATCCATATATTTTGTGATAGATTAAATA-TTAATTTTGAGCATGACTT--GTAAATT-AAAAGTATAATTGCTTGATTAATTTTGATCCTATAATTATTTAAGAAT--TGAGGCAGCTAAGTATGCCACTATCACATAAAAACAGAATTTCTGAATCCTTTGACCTCTAATGATTATATTGCCTGCCCTTTAAAATTAAGAATTTGGATTAAAGAAGAGTTATTTCTCCCAGATTCATATGGTTCTTAATCATCACCTATGGCTTAAAATCAAA-----TCTCAATTCTCAACAAATTAATTACCTACTAGGCATTATCCAATTTC-ATCACTTGCTAAATTCTTACCGG-------------CTGACTTGG---------GTACACACAGCAAGAGAGTTATCATCTGAAGATAT
s panTro5.chr6             29606959 385 + 175400573 AGTATCCATATATTTTGTGATAGATTAAATA-TTAATTTTGAGCATGACTT--GTAAATT-AAAAGTATAATTGCTTGATTAATTTTGATCCTATAATTATTTAAGAAT--TGAGGCAGCTAAGTATGCCACTATCACATAAAAACAGAATTTCTGAATCCTTTGACCTCTAATCATTATATTGCCTGCCCTGTAAAATTAAGAATTTGGATTAAAGAAGAGTTATTTCTCCCAGATTCATATGGTTCTTAATCATCACCTGTGGTTTAAAATCAAA-----TCTCAATTCTCAACAAATTAATTACCTACTAGGCATTATCCAATTTC-ATCACTTGCTAAATTCTTACCGG-------------CTGACTTGG---------GTACACACAGCAAGAGAGTTATCATCTGAAGATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29845183 385 + 173848474 AGTATCCATATATTTTGTGATAGATTAAATA-TTAATTTTGAGCATGACTT--GTAAATT-AAAAGTATAATTGCTTGATTAATTTTGATCCTATAATTATTTAAGAAT--TGAGGCAGCTAAGTATGCCACTATCACATAAAAACAGAATTTCTGAATCCTTTGACCTCTAATCATTATATTGCCTGCCCTGTAAAATTAAGAATTTGGATTAAAGAAGAGTTATTTCTCCCAGATTCATATGGTTCTTAATCATCACCTGTGGTTTAAAATCAAA-----TCTCAATTCTCAACAAATTAATTACCTACTAGGCATTATCCAATTTC-ATCACTTGCTAAATTTTTACCAG-------------CTGACTTGG---------GTACACACAGCAAGAGAGTTATCATCTGAAGATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5648018 385 +   6154872 AGTATCCATATATTTTGTGATAGATTAAATA-TTAATTTTGAGCATGACTT--GTAAATT-AAAAGTATAATTGCTTGATTAATTTTGATCCTATAATTATTTAAGAAT--TGAGGCAGCTAAGTATGCCACTATCACATAAAAACAGAATTTCTGAATCCTTTGACCTCTAATCATTATATTGCCTACCCTTTAAAATTAAGAATTTGGATTAAAGAAGAGTTATTTCTCCCAGATTCATATGGTTCTTAATCATCACCTATGGTTTAAAATCAAA-----TCTCAATTCTCAACAAATTAATTACCTACTAGGCATTATCCAATTTC-ATCACTTGCTAAATTCTTACTGG-------------CTGACTTGG---------GTACACACAGCAAGAGAGTTATCATCTGAAGATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742          2048105 407 -   2232465 AATATTCGCACATCTTGAGATAGATTAAATATTTAATTTTGAGCATGTCTTAAATAAGTTAAAAAATATGATTGCTTCATTAA-TTTGGTTATATAATGGTTTAAGAATTATAGAGCAGGTAGGGATGTCACTGCTTCATAAAAACAGAATTTCTGAACCTTTAGTCCTCTAATCATAATATGGCCTAGTCTTCAAAATGAAGAA-ATGGATT-----AGAGTTGTTGCTCATAGAGCCATATAATTCTT-ATTATCACCTATGTTTTAAAATAAAATAAACTTCCAATTCTGAACA----AATTATCTTCTAGGTGTTATCCTGTTTTAAACACTTGCTAAATTCTTACCTGTGTTTTTTTATACTTGATTTGGAACACTTACGTGTGTATAGCAAGAGGGTTATCATCTGAAGGTGT
i otoGar3.GL873742         C 0 I 677
e dasNov3.JH570741           497930 32941 +   1532071 I
e proCoq1.NW_012152574v1     386706 6348 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     259833   0 -    352859 C
e chlSab2.chr17            28777800   0 -  71996105 C
e cerAty1.NW_012002711v1     275575   0 +    766320 C
e macNem1.NW_012011356v1    2523231   0 -   2996164 C
e macFas5.chr4             29536807   0 - 170955103 C
e rheMac8.chr4             29873771  60 + 172585720 I

a score=744107.000000
s hg38.chr6_GL000254v2_alt   635305 1353 +   4827813 CTATGAGTGGTTATTTCACTCCAAAAACAGACGATAATAAATTTTGCATTATTCATTTATTGTATCTAACATTCATTACCAATAAGTCTTTTTAAATTtttttattttatatttatttttagttttta-cttttTTAAAAAAAttcaacttctattttagacatagtggatatatgtgcagatttgttacatgggaatattgcatgatgttcaaatttggagtatggatctcaccaccctggtaatgagcctagtacctggcttgataggcagttttttaacccatcctcccccatccctgaagcctctggtagtccacagtgtctattgttcccatacctatgttcatgtgtgctcaatgcttaactcccacttataagttacaacatgcagtatttggttttctgttcctgtgttaacttgcttagaattatgccctccagctccatccatgttgctgcaaaggacattattttattctgtttttatggctgcatagtattccatggtgcatatgtaacacattttctttatccagtctgtc--------------------attccacatctttgctattgtgagcagcgcaacaatgaacatgtgagtgtatgtatcctattggtagaatgatttattttattttgatatatacccattaatgagattgctgtattgaatagtagttctgttttaaattatttgagaaatctccagactgcttttcacagttgctggactaatccacattcccaccaacagcatataagcattcccttttctctgcagctttgatagcatctgttgttttttgactttttaaatagtcattctgactggtgtgagataatatctcactgcagttttgatttgcatttccctgataattagtgatgctgataattttttcgtatgtttgttagccacatgtatgtcttcttttgagagtgttttttcatgtcctttgcccatttattaatgggattattggctttctgcttgttgacttaaactttaagttccctatagattctggatattaggcctttgtcagatgcattgtttgtgaatatcttctccctttctgtagatagtgtgtttgctctgttgatagtttcttttgctgtgcagaagctctttagtttaatcaggtctcacttgtctatttttgtttttgttgccattgcttttggtgacttagccaaaaatcttttgccaaggccgatgttgagaagagtatttcctaggttatcttccatgatttctataatttgaggtcttacatttaaatctttaatcaattttgagttaacttttgtatagggtaaaaggtaggtatccagcttcaatcttctgtatatgacaaggaag
s panTro5.chr6             29607344 1368 + 175400573 CTATGAGTGGTTATTTCACTCCAAAAACAGACGATAATAAATTTTGCATTATTCATTCATTGTATCTAACATTCATTACCAGTAAGTCTTTTTAAA-TtttttattttatatttatttttagtttttaccttttttAAAAAAAttcaacttctattttagacatagtggatatatgtgcagatttgttacatgggaatattgcatgatgttcaaatttggagtatggatctcaccaccctggtaatgagcctagtacctggcttgataggcagttttttaacccatcctcccccatccctgaagcctctggtagtccacagggtctattgttcccatacctatgttcatgtgtgctcaatgcttgactcccacttataagttacaacatgcagtatttggttttctgttcctgtgttaacttgcttagaattatgccctccagctccatccatgttgctgcaaaggacattattttattctgtttttatggctgcatagtattccatggtgcgtatgtaacacattttctttatccagtctatcattgatgggcacctgggttgattccacatctttgctattgtgagcagcgcaacaatgaacatgtgagtgtatgtatcttattggtagaatgatttattttattttgatatatacccattaatgagattgctgtattgaatagtagttctgttttaaattatttgagaaatctccagactgcttttcacacttgctggactaatccacattcccaccaacagcatataagcattcccttttctctgcagctttgatagcatctgttgttttttgactttttaa--agtcattctgactggtgtgagataatatctcattgcagttttgatttgcatttccctgataattagtgatgctgataattttttcgtatgtttgttagccacatgtatgtcttcttttgagagtgttttttcatgtcctttgcccatttattaatgggattattggctttctgcttgttgacttg---tttaagttccctatagattctggatattaggcctttgtcagatgcattgtttgtgaatatcttctccctttctgtagatagtgtgtttgctctgttgatagtttcttttgctgtgcagaagctctttagtttaatcaggtctcacttgtctatttttgtttttgttgccattgcttttggtgacttagccaaaaatcttttgccaaggccaatgttgagaagagtatttcctaggttgtcttccatgatttctataatttgaggtcttacatttaaatctttaatcaattttgagttaacttttgtatagggtaaaaggtaggtatccagcttcaatcttctttttatgacaaggaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29845568 1368 + 173848474 CTATGAGTGGTTATTTCACTCCAAAAACAGACGATAATAAATTTTGCATTATTCATTTATTGTATCTAACATTCATTACCAGTAAGTCTTTTTAAA-TtttttattttatatttatttttagtttttacattttttAAAAAAAttcaacttctattttagacatagtggatatatgtgcagatttgttacatgggaatattgcatgatgttcaaatttggagtatggatctcaccaccctggtaatgagcctagtacctggcttgataggcagttttttaacccatcctcccccatccctgaagcctctggtagtccacagggtctattgttcccatacctatgttcatgtgtgctcaatgcttgactcccacttataagttacaacatgcagtatttggttttctgttcctgtgttaacttgcttagaattatgccctccagctccatccatgttgctgcaaaggacattattttattctgtttttatggctgcatagtattccatggtgcgtatgtaacacattttctttatccagtctatcattgatgggcacctgggttgattccacatctttgctattgtgagcagcgcaacaatgaacatgtgagtgtatgtatcttattggtagaatgatttattttattttgatatatacccattaatgagattgctgtattgaatagtagttctgttttaaattatttgagaaatctccagactgcttttcacacttgctggactaatccacattcccaccaacagcatataagcattcccttttctctgcagctttgatagcatctgttgttttttgactttttaa--agtcattctgactggtgtgagataatatctcattgcagttttgatttgcatttccctgataattagtgatgctgataattttttcgtatgtttgttagccacatgtatgtcttcttttgagagtgttttttcatgtcctttgcccatttattaatgggattattggctttctgcttgttgacttg---tttaagttccctatagattctggatattaggcctttgtcagatgcattgtttgtgaatatcttctccctttctgtagatagtgtgtttgctctgttgatagtttcttttgctgtgcagaagctctttagtttaatcaggtctcacttgtctatttttgtttttgttgccattgcttttggtgacttagccaaaaatcttttgccaaggccaatgttgagaagagtatttcctaggttgtcttccatgatttctataatttgaggtcttacatttaaatctttaatcaattttgagttaacttttgtatagggtaaaaggtaggtatccagcttcaatcttctttttatgacaaggaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5648403 1369 +   6154872 CTATGAGTGGTTATTTCACTCCAAAAACAGACAATAATAAATTTTGCATTATTCATTTATTGTATCTAACATTCATTACCAATAAGTCTTTTTAAA-TtttttattttatatttatttttagtttttaccttttttAAAAAAACtcaacttctattttagacatagtggatatatgtgcagatttgttacatgggaatattgcatgatgttcaaatttggagtatggatctcaccactctggtaatgagcctagtacctggcttgataggcagttttttaacccatcctcccccatccctgaagcctctggtagtccacagtgtctattgttcccatacctatgttcatgtgtgctcaatgcttaactcccacttacaagttacaacatgcagtatttggttttctgttcctgtgttaacttgcttagaattatgccctccagctccatccatgttgctgcaaaggacattattttattctgtttttatggctgcatagtattccatggtgcatatgtaacacattttctttatccagtctatcattgatgggcacctgggttgattccacatctttgctattgtgagcagcgcaacaatgaacatgtgagtgtatgtatcttattggtagaatgatttattttattttgatatatacccattaatgagattgctgtattggatagtagttctgttttaaattatttgagaaatctccagactgctttttacagttgctggactaatccacattcccaccaacagcatataagcattcccttttctctgcagccttgatagcatctgttgttttttgactttttaaatagtcattctgactggtgtgagataatatctcattgcagttttgatttgcatttccctgataattagtgatgctgataattttttcgtatgtttgttagccacatgtatgtcttcttttgagagtgttttttcatgtcctttgcccatttattaatgggattattggctttctgcttgttgacttg---tttaagttccctatagattctggatattaggcctttgtcagatgcattgtttgtgaatatcttctccctttctgtagatagtgtgtttgctctgttgatagtttc-tttgctgtgcagaagctctttagtttaatcaggtctcacttgtctatttttgtttttgttgccattgcttttggtgacttaaccaaaaatcttttgccaaggccgatgttgagaagagtatttcctgggttgtcttccatgatttctataatttgaggtcttacatttaaatctttaatcaattttgagttaacttttgtatagggtaaaaggtaggtatccaacttcaatcttctgtatatgacaaggaag
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570741           497930 32941 +   1532071 I
e proCoq1.NW_012152574v1     386706 6348 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2048512  677 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     259833    0 -    352859 C
e chlSab2.chr17            28777800    0 -  71996105 C
e cerAty1.NW_012002711v1     275575    0 +    766320 C
e macNem1.NW_012011356v1    2523231    0 -   2996164 C
e macFas5.chr4             29536807    0 - 170955103 C
e rheMac8.chr4             29873771   60 + 172585720 I

a score=296382.000000
s hg38.chr6_GL000254v2_alt   636658 445 +   4827813 ttatccgcgcaccatttattaaatagggaatcatttccccatagcttgttttCTTCTTATAAATC-TAGGAGTTTGGGGTGTCTTTGCTTTTTATGATGTATAATAAGGGATTTACCAATAATG----TGTGCTCTCTAACATTAAATCAGCTGTTTTTTTCCAGTGAATAAATTGAGATTAAATGAGTGTACGTGACTATAAATGGCCATAACAAAAA--AGAAATAGATAGGGTAGAGACAAAAAGGAAAAAAAATTTCACTTCCTTTTTAAAGATGATCTATTCAGAATAATAAAAATGAGGTGAAAATAGGAAAATATTATTAAGAGCAAAATAATAGTAGAATCAACTCTTTTATAGAGATATACTCATAGAACAGAGTAGGAAAACAGGGACATCATACACTG-AAATATTTGCTCTGTTTGTTTCTACAAAAAAAGGAGAAAAAAA
s panTro5.chr6             29608712 445 + 175400573 ttatccccgcaccatttattaaatagggaatcatttccccatagcttgttttCTTCTTATAAATC-TAGGAGTTTGGGGTGTCTTTGCTTTTTATGATGTATAGTAAGGGATTTACCAATAATG----TGTGCTCTCTAACATTAAATCAGCTGTTTTTTTCCAGTGAATAAATTGAGATTAAATGAGTGTACATGACTATAAATGGCCATAACAAAAA--AGAAATAGATAGGGTACAGACAAAAAGGAAAAAAACTTTCACCTCTTTTTTAAAGATGATCTATTCAGAATAATAAAAATGAGGTGAAAATAGGAAAATATTATTAAGAGCAAAATAATAGTAGAATCAACTCTTTTATAGCGACATACTCATAGAACAGAGTAGGAAAACAGGGACATCATACACTG-AAATATTTGCTCTGTTTGTTTCTACAAAAAAAGCAGAAAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29846936 444 + 173848474 ttatccccgcaccatttattaaatagggaatcatttccccatagcttgttttCTTCTTATAAATC-TAGGAGTTTGGGGTGTCTTTGCTTTTTATGATGTATAATAAGGGATTTACCAATAATG----TGTGCTCTCTAACATTAAATCAGCTGTTTTTTTCCAGTGACTAAATTGAGATTAAATGAGTGTACATGACTATAAATGGCCATAACAAAAA--AGAAATAGATAGGGTACAGACAAAAAGGAAAAAAACTTTCACCTCTTTTTTAAAGATGATCTATTCAGAATAATAAAAATGAGGTGAAAATTGGAAAATATTATTAAGAGCAAAATAATAGTAGAATCAACTCTTTTATAGCGACATACTCATAGAACAGAGTAGGAAAACAGGGACATCATACACTG-AAATATTTGCTCTGTTTGTTTCTAC-AAAAAAGCAGAAAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5649772 444 +   6154872 ttatccccgcaccatttattaaatagggaatcatttccccatagcttgttttCTTCTTATAAATC-TAGGAGTTTGGGGTGTCTTTGCTTTTTATGATGTATAATAAGGGATTTCCCAATAATG----TGTGCTCTCTAACACTAAATCAGCTGTTTTTTTCCAGTGAATAAATTGAGATTAAATGAGTGTACGTGACTATAAATGGCCATAACAAAAA--AGAAATAGATAGGGTAGAGACAAAAAGGAAAAAAAATTTCACTTCCTTTTTAAAGATGATCTATTCAGAATAATAAAAATGAGGTGAAAATAGGAAAATATTATTAAGAGCAAAATAATAGTAGAATCAACTCTTTTATAGAGATATACTCATAGAACAGAGTAGGAAAACAGGGACATCATACACTG-AAATATTTGCTCTGTTTGTTTCTACAAAAAAAGCAG-AAAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742          2049189 407 -   2232465 ttattaGCGGGTCCTTTATTAG--AAGGAGACACTTC-----------------TTTAATAAATCGCAGGGTGTTTGGATGTTTTTTCTCTTTATAGTATGCAATAAAGGA-TTACTAATAAAGTAACTGTATTTTCT-----------AGCTGAATTTTTCCAATGAATAA----TGCTAAGATGAATATATATGACAATCAA-AGCCATAACAGAAAATAAAAATGGATAGAGTGAAGATGAAAAG---AAGGATTTTCACTTCCTTTCTACATATGAGATATTGAGAACAATAAAAATGAGGTG-GAACAGGAAAATG--ATTAGGAGTAAACTAATAGCAGAATTAGCTCTTTTGTAAAGATATACTCACAAAACAAAGTAAAGAAACAGGAATATCCCACACTGAAAATATTTTTTC----TGTTACTACtgaaaactaaaaataaaa
i otoGar3.GL873742         I 677 I 350
e dasNov3.JH570741           497930 32941 +   1532071 I
e proCoq1.NW_012152574v1     386706 6348 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     259833   0 -    352859 C
e chlSab2.chr17            28777800   0 -  71996105 C
e cerAty1.NW_012002711v1     275575   0 +    766320 C
e macNem1.NW_012011356v1    2523231   0 -   2996164 C
e macFas5.chr4             29536807   0 - 170955103 C
e rheMac8.chr4             29873771  60 + 172585720 I

a score=83630.000000
s hg38.chr6_GL000254v2_alt   637103 162 +   4827813 GTTAACAAAGTGTGAATTTAAGATAAggcctggagtgctggctcacacctgtaatcctatcactttgggaggcagaggcaggaagatcccttgagcccaggagttcaagaccagcctgggaaacatagggcgactctgtctcaatttaagaaaaaaaaa---aTA
s panTro5.chr6             29609157 164 + 175400573 GTTAACAAAA-GTGAATTTAAGATAAggcctggagtgctggctcacacctgtaatcctatcactttgggaggcagaggcaggaagatcccttgagcccaggagttcaagaccagcctgggaaacatagggcgactctgtctcaatttaagaaaaaaaaaTATATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29847380 163 + 173848474 TTTAACAAAA-ATGAATTTAAGATAAggcctggagtgctggctcacacctgtaatcctatcactttgggaggcagaggcaggaagatcccttgagcccaggagttcaagaccagcctgggaaacatagggcgactctgtctcaatttaagaaaaaaTAT-ATATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5650216 163 +   6154872 GTTAACAAAGTGTGAATTTAAGATAAggcctggagtgctggctcacacctgtaatcctgtcactttgggaggcagaggcaggaagatcccttgagcccaggagttcaagaccagcctgggaaacatagggcaactctgtctcaatttaagaaaaaaaTA--TATA
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570741           497930 32941 +   1532071 I
e proCoq1.NW_012152574v1     386706 6348 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2049596 350 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     259833   0 -    352859 C
e chlSab2.chr17            28777800   0 -  71996105 C
e cerAty1.NW_012002711v1     275575   0 +    766320 C
e macNem1.NW_012011356v1    2523231   0 -   2996164 C
e macFas5.chr4             29536807   0 - 170955103 C
e rheMac8.chr4             29873771  60 + 172585720 I

a score=7116.000000
s hg38.chr6_GL000254v2_alt   637265 9 +   4827813 TAAGCATCA
s panTro5.chr6             29609321 9 + 175400573 TAAGCATCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29847543 9 + 173848474 TAAGCATCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5650379 9 +   6154872 TAAGCATCA
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742          2049946 9 -   2232465 TAAGTAGCA
i otoGar3.GL873742         I 350 C 0
e dasNov3.JH570741           497930 32941 +   1532071 I
e proCoq1.NW_012152574v1     386706 6348 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     259833 0 -    352859 C
e chlSab2.chr17            28777800 0 -  71996105 C
e cerAty1.NW_012002711v1     275575 0 +    766320 C
e macNem1.NW_012011356v1    2523231 0 -   2996164 C
e macFas5.chr4             29536807 0 - 170955103 C
e rheMac8.chr4             29873771 60 + 172585720 I

a score=2997.000000
s hg38.chr6_GL000254v2_alt   637274 1 +   4827813 A
s panTro5.chr6             29609330 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29847552 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5650388 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29873831 1 + 172585720 A
i rheMac8.chr4             I 60 C 0
s macNem1.NW_012011356v1    2523231 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     275575 1 +    766320 A
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28777800 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     259833 1 -    352859 A
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2049955 1 -   2232465 G
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570741           497930 32941 +   1532071 I
e proCoq1.NW_012152574v1     386706 6348 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e macFas5.chr4             29536807 0 - 170955103 C

a score=766923.000000
s hg38.chr6_GL000254v2_alt   637275 175 +   4827813 CCCTGAACAGTATTGCCAGCTACATATGTTGTACCTCGATCAGGAGTGACTACATTAGTGCCTGTGATTTAGATTATATCACACTAATGTTATTGATACTAGAAAGTAGTCGTGTGTACCCACAACAGAT---AGGAAGATCTACATTCCGCAACCTCAAAAATAATGA-TTTTTGTGT
s panTro5.chr6             29609331 175 + 175400573 CCCTGAACAGTATGGCCAGCTACATATGTTGTACCTCGATCAGGAGTGACTACATTAGTGCCTGTGATTTAGATTATATCACACTAATGTTATTGATACTAGAAAGTAGTCGTGTGTACCCACAACAGAT---AGGAAGATCTACATTCCACAACCTCAAAAATAATGA-TTTTTGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29847553 175 + 173848474 CCCTGAACAGTATGGCCAGCTACATATGTTGTACCTCGATCAGGAGTGACTACATTAGTGCCTGTGATTTAGATTATATCACACTAATGTTATTGATACTAGAAAGTAGTCGTGTGTACCCACAACAGAT---AGGAAGATCTACATTCCACAACctcaaaaataatga-tttttgttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5650389 175 +   6154872 CCCTGAACAGTATTGCCAGCTACATATGTTGTACCTTGATCAGGAGTGACTACATTAGTGCCTGTGATTTAGATTATATCACACTAATGTTATTGATACTAGAAAGTAGTCGTGTGTACCCACAACAAAT---AGGAAGATCTACATTCCACAACCTCAAAAATAATGA-TTTTTGTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29873832 175 + 172585720 CCCTGAACAGTATTGCCAGCTACATATGTTGTACCTTGATCATGAGTGATGACATTAGTGCCTGTGATTTATATTATATCACACTAATGTTATTGATACCAGAAAGTGGTCGTGCGTACCCACAACAGAT---AAGAAGATCTACATTCCACAACCTCAAAAATAATGA-TTTTTTTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29536807 175 - 170955103 CCCTGAACAGTATTGCCAGCTACATATGTTGTACCTTGATCATGAGTGATGACATTAGTGCCTGTGATTTATATTATATCACACTAATGTTATTGATACCAGAAAGTGGTCGTGCGTACCCACAACAGAT---AAGAAGATCTACATTCCACAACCTCAAAAATAATGA-TTTTTTTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2523232 176 -   2996164 CCCTGAACAGTATTGCCAGCTACATATGTTGTATCTTGATCATGAGTGATGACATTAGTGCCTGTGATTTAGATTATATCACACTAATGTTATTGATACCAGAAAGTGGTCGTGCATACCCACAACAGAT---AAGAAGATCTACATTCCACAACCTCAAAAATAATGATTTTTTTTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     275576 176 +    766320 CCCTGAACAGTATTGCCAGCTACATATGTTGTACCTTGATCATGAGTGACGACATTAGTGCCTGTGATTTATATTATATCACACTAATGTTATTGATACCAGAAAGTGGTTGTGCGTACCCACAACAGAT---AAGAAGATCTACATTCCACAACCTCAAAAATAATGATTTTTTTTGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28777801 175 -  71996105 CCCTGAACAGTATTGCCAGCTACATATGTTGTACCTTGATCATGAGTGACGACATTAGTGCCTGTGATTTAGATTATATCACACTAATGTTATTGATACCAGAAAGTGGTCGTGCGTACCCACAACAGAT---AAGAAGATCTACATTCCACAACCTCAAAAATAATGA-TTTTTTTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     259834 174 -    352859 CCCTGAACAGTATTGCCAGCTACATATGTTGTACCTTGATCATGAGTGACGACATTAGTGCCTG-GATTTATATTATATCACACTAATGTTATTGATACCAGAAAGTGGTCCTGTGTACTCACAACAGAT---AAGAAGATCTACATTCCACAACCTCAAAAATAATGA-TTTTTTTGT
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2049956 174 -   2232465 CTCCAAACAGAATTGTTCATCACATATGTTGTACCTTGCTCATGAATGAATACATTAGGGCTTGTGACTTA---TATATCACACTAATGTTATTGACACCAGAAAGTGGCTATGTGTACTCACAAAGAATGAAAGGAAAATTTACATT-CACAGTCTCAAAAGTAATAC-CTCtgttgt
i otoGar3.GL873742         C 0 I 10377
e dasNov3.JH570741           497930 32941 +   1532071 I
e proCoq1.NW_012152574v1     386706 6348 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=7367603.000000
s hg38.chr6_GL000254v2_alt   637450 2023 +   4827813 TTCATTACTTGCCATAATAAAGTAACGAGATTTTCTCTCCTGATTAAACATCTAAAAAATGGAATAAAATATATAAAGCAATGATTTTAATACACTGTACAAGacagggttgggtatgtcccatgacccatcagcctgattggaacagcttgtaatagacaaggacttaggtggagtcctgagaaggatattaccttagtagtgggggctaaattaatctcagaataaacaatgttctggatctaccttaacaa--aAAAAAAGTATGCCTCAAAATAAGCATAATAATTTAGGGGAAATACAGACATAAAAAGAGAGAG---ATTTTT-TTaaagacccacatagaacttgtttaaataaaaaatacaaaatataaagtgaaaaatgcagtgcatggaataaacagtag-attaattactgcagaag--aaaaaatcaaggaacttggagatatagatataaaaacaatccaaaatgaagcacagagaaatctttttaataaaatggacaaagtatcaatgacctatgtcataatttcaagcagtctaacatatgtgcaagtggagtactaaagaagtgtttga-ttaaaaacattgaagaagtaatgactgagtttttccaaatttgataaaatatataatctatagatccaagaagctcaataaaaattaaatagaataaatattagaaaactttacaatgaacatcataatctatttgctaaaaaagtcataaagaaaaatcttaaaatcagcaagagaaaaatcaacacagttattacaaaggaataaagataagaatggcagcatgcatcccaccagaaattatgtgagacaggtaatggagcaacagctttaaagcacataaacaaaagtctgccaatttaaaattttatatacagagaaaacatctcttaaaaataagggcaaagtactttttcatgccaacaaaagctgaagtaaattattaccagcagaactttactacaagaaatagttaaggaaagtctttag---acaacaacaacaaaaaaatgatacgagatgaaaatcagtgtctccatgaagggaccaaaagtgccagaaattataaatatgtgtttaagtgtaaaagacatttttattatttttaattaccttaaaaataatagaatttttc-------aaaaaaaa-cagaattgcagtatcttggatactaataacataagtaaaagtaaaatgtgtgacattaaaatcacaaagcatgagcagggagatggaagtacagtatggcatgactctagcaatacatcttaaatggtgtaatattacgtgaagaaatattttgtgaatttaaaatgtacattgtaaaccccagagtaaccacaaaaatataaaataaaaaggtataaataaaaggacaatagtgaaaatataatgaaatcataaaaatattcccataaaaaacagtaaatgaaagaagaagcaataacggacaaataggacaaatgaaaggcaaacagttggaggac----------------------------------------aaatttaaatttaattctatcaaaaatttagttggaggataaatttaaatttaattctatcaaaaatttatcaaatttaaattgtgcaaacactccaactaaaacaaagagcttgtcacattggcttaatgggtatgaaaatgcagttagatagaacgaagaacttctagtattcaacagtaAACTAATGCAGGGACAGTAATGTAGGTttagcttgattgtggtagtctcttcacaatgtatacatatactaaagcatcatgttgtgaagcctaaatatatgcaatttttatttgttaattatacttcaat-aagctggggaaaAACAAgatattttcaatggct--agaaaaatctctccctaaaattaaatacccattaaaaattctcttcaagaattaagattaacaaaaatgacattctagataaaaactgttgtgagaaaaattatcatcagtacattcctgctgaaggaaacacaaaaggaaaaaaaataggcaaaaataaagattatctcatatggaaTTTCAGT
s panTro5.chr6             29609506 1985 + 175400573 CTCATTACTTGCCATAATAAAGTAACGAGATTTTCTCTCCTGATTAAACATCTAAAAAATGGAATAAAATATATAAAGCAATGATTTTAATACACTGTACAAGacagggttgggtatgtcccatgacccatcagcctgattggaacaacttgtaatagacaaggacttaggtggagtcctgagaaggatattaccttagtagtgggggctaaattaatctcagaataaacaatgttctggatctacattaacaa--aAAAAAAGTATGCCTCAAAATAAGCATAATAATTTAGGGGAAATACAGACATAAAAAGAGAGAG----TTTTT-TTaaagacccacatagaacttgtttaaataaaaaataaaaaatataaagtgaaaaatgcagtgcatggaataaacagtag-attaattactgcagaag--aaaaaatcaaggaacttggagacatagatataaaaacaatccaaaatgaagcacagagaaatttttttaataaaatggacaaagtatcaatgacctatgtcataatttcaagcagtctaacatatgtgcaagtggagtactaaagaagtgtttga-ttaaaaaaattgaagaagtaatgactgagtttttccaaatttgataaaatatataatctatagatccaagaagctcaataaaaattaaatagaataaatattagaaaactttacaatgaacatcataatctatttgctaaaaaagtcataaagaaaaatcttaaaatcagcaagagaaaaatcaacagagttattacaaaggaataaagataagaatggcagcatgcatcccaccagaaattatgtgagacaggtaatggagcaacagctttaaagcacataaacaaaagtctggcaatttaaaattttatatacagagaaaacaccccttaaaaataagggcaaagtactttttcatgccaacaaaagctgaagtaaattattaccagcagaactttactacaagaaatagttaaggaaagtctttagacaacaacaacaacaaaaaaatgatacgagatgaaaatcagtgtctccatgaagggaacaaaggtgccagaaattataaatatgtgtttaagtgtaaaagacatttttattatttttaattaccttaaaaataatagaatttttc------aaaaaaaaa-cagaattgcagtgtctcggataccaataacataagtaaaagtaaaatgtgtgacattagaatcacaaagcatgagcagggagatggaagtacagtatggcatgactctagcaatacatcttaaatggtgtaatattatgtgaagaaatattttgtgaatttaaaatgtacattgtaaaccccagagtaaccacaaaaatataaaataaaaaggtataaataaaaggtcaatagtgaaaatataatgaaatcataaaaatattcccataaaaaacagtaaatgaaagaagaagcaataacggacaaataggacaaatgaaaggcaaacagttggaggac--------------------------------------------------------------------------------aaatttaaatttaattctatcaaaaatgtatcaaatttaaattgtgcaaacactccaactaaaacaaagagcttgtcacattggcttaatgggtatgaaaatgcagttagatagaacgaagaacttctagtattcaacagtaAACTAATGCAGGGACAGTAATGTAGGTttagcttgatagtggtagtctcttcacaatgtatacatatactaaagcatcatgttgtgaagcctaaatatatgcaatttttatttgttaattatacttcaat-aagctggggaaaAACAAGATATTTTCAATGGCT--AGAAAAATCTTTCCCTAAAATTAAATACCCATTAAAAATTCTCTTCAAGAATTAAGATTAACAAAAATGATATTCTAGATAAAAACTGTTGTGAGAAAAATTATCATCAGTACATTCCTGCTGAAGGAAACACAAAAGG-AAAAAAATAGGCAAAAATAAAGATTATCTCATATGGAATTTCAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29847728 1984 + 173848474 ctcattacttgccataataaagtaacgagattttctctcctgattaaacatctaaaaaatggaataaaatatataaagcaatgattttaatacactgtacaAGacagggttgggtatgtcccatgacccatcagcctgattggaacaacttgtaatagacaaggacttaggtggagtcctgagaaggatattaccttagtagtgggggctaaattaatctcagaataaacaatgttctggatctacattaac-a--aaAAAAAGTATGCCTCAAAATAAGCATAATAATTTAGGGGAAATACAGACATAAAAAGAGAGAG----TTTTT-TTaaagacccacatagaacttgtttaaataaaaaataaaaaatataaagtgaaaaatgcagtgcatggaataaacagtag-attaattactgcagaag--aaaaaatcaaggaacttggagacatagatataaaaacaatccaaaatgaagcacagagaaatttttttaataaaatggacaaagtatcaatgacctatgtcataatttcaagcagtctaacatatgtgcaagtggagtactaaagaagtgtttga-ttaaaaaaattgaagaagtaatgactgagtttttccaaatttgataaaatatataatctatagatccaagaagctcaataaaaattaaatagaataaatattagaaaactttacaatgaacatcataatctatttgctaaaaaagtcataaagaaaaatcttaaaatcagcaagagaaaaatcaacagagttattacaaaggaataaagataagaatggcagcatgcatcccaccagaaattatgtgagacaggtaatggagcaacagctttaaagcacataaacaaaagtctggcaatttaaaattttatatacagagaaaacaccccttaaaaatgagggcaaagtactttttcatgccaacaaaagctgaagtaaattattaccagcagaactttactacaagaaatagttaaggaaggtctttagacaacaacaacaacaaaaaaatgatacgagatgaaaatcagtgtctccatgaagggaacaaaggtgccagaaattataaatatgtgtttaagtgtaaaagacatttttattatttttaattaccttaaaaataatagaatttttc------aaaaaaaaa-cagaattgcagtgtctcggataccaataacataagtaaaagtaaaatgtgtgacattaaaatcacaaagcatgagcagggagatggaagtacagtatggcatgactctagcaatacatcttaaatggtgtaatattatgtgaagaaatattttgtgaatttaaaatgtacattgtaaaccccagagtaaccacaaaaatataaaataaaaaggtataaataaaaggtcaatagtgaaaatataatgaaatcataaaaatattcccataaaaaacagtaaatgaaagaagaagcaataacagacaaataggacaaatgaaaggcaaacagttggaggac--------------------------------------------------------------------------------aaatttaaatttaattctatcaaaaatttatcaaatttaaattgtgcaaacactccagctaaaacaaagagcttgtcacattggcttaatgggtatgaaaatgcagttagatagaacgaagaacttctagtattcaacagtaAACTAATGCAGGGACAGTAATGTAGGTttagcttgatagtggtagtctcttcacaatgtatacatatactaaagcatcatgttgtgaagcctaaatatatgcaatttttatttgttaattatacttcaat-aagctggggaaaAACAAGATATTTTCAATGGCT--AGAAAAATCTTTCCCTAAAATTAAATACCCATTAAAAATTCTCTTCAAGAATTAAGATTAACAAAAATGATATTCTAGATAAAAACTGTTGTGAGAAAAATTATCATCAGTACATTCCTGCTGAAGGAAACACAAAAGG-AAAAAAATAGGCAAAAATAAAGATTATCTCATATGGAATTTCAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5650564 2061 +   6154872 CTCATTACTTGCCATAATAAAGTAACGAGATTTTCTCTCCTGATTAAACATCTAAAAAATAGAATAAAATATATAAAGCAATGATTTTAATACACTGTACAAGacagggttgggtatgtcccatgacccatcagcctgattggagcaacttgtaatagacaaggacttaggtggagtcctgagaaggatattaccttagtagtgggggctaaattaatctcagaataaacaatgttctggatctacattaacaa--aAAAAAAGTATGCCTCAAAATAAGCATAATAATTTAGGGGAAATGCAGACATAAAAAGAGAGAG---ATTTTT-TTaaagacccacatagaacttgtttaaataaaaaatacaaaatataaagtgaaaaatgcagtgcatggaataaacagtagtagtaattactgcagaag--aaaaaatcaaggaacttggagacatagatataaaaacaatccaaaatgaagcacagagaaatttttttaataaaatggacaaagtatcaatgacctatgtcataagttcaagcagtctaacatatgtgcaagtggagtactaaagaagtgtttga-ttaaaaaaattgaagaagtaatgactgagtttttccaaatttgataaaatatataatctatagatccaagaagctcaataaaaattaaatagaataaatattagaaaacttcacaatgaacatcataatctatttgctaaaaaagtcataaagaaaaatcttaaaatcagcaagagaaaaatcaacacagttattacaaaggaataaagataagaatagcagcatgcatcccaccagaaattatgtgagacaggtaatggagcaacagctttaaagcacataaacaaaagtctggcaatttaaaattttatatacagagaaaacacctcttaaaaataa-ggcaaagtactttttcttgccaacaaaagctgaagtaaattattaccagcagaactttactacaagaaatagttaaggaaagtctttag---acaacaacaacaaaaaaa-gatacgagatgaaaatcagtgtctccatgaagcgaacaaaagtgccagaaattataaatatgtgtttaagtgtaaaagacatttttattatttttaattaccttaaaaataatagaattttta-------aaaaaaaa-cagaattgcagtgtcttggatactaataacataagtaaaagtaaaatgtgtgacattaaaatcacaaagcatgagcagggagatggaagtacagtatggcatgactctagcaatacatcttaaatggtgtaatattatgtgaagaaatattttgtgaatttaaaatgtacattgtaaaccccagagtaaccacaaaaatataaaataaaaaggtataaataaaaggtcaatagtgaaaatataatgaaatcataaaaatattcccataaaaaacagtaaatgaaagaagaagcaataacggacaaataggacaaatgaaaggcaaacagttggaggacaaatttaaatttaattctatcaaaaatTTAGTTGGAGGATAAATTTAAATTTAATTCTATCAAAAATTTAGTTGgaggataaatttaaatttaattctatcaaaaatttatcaaatttaaattgtgcaaacactccaactaaaacaaagagcttgtcacattggcttaatgggtatgaaaatgcagttagatagaatgaagaacttctagtattcaacagtaAACTAATGCAGGGACAGCAATGTAGGTttagcttgattgtggtagtctcttcacaatgtatacatatactaaagcatcatgttgtgaagcctaaatatatgcaatttttatttgttaattatacttcaat-aagctggggaaaAACAAGATACTTTCAATGGCT--AGAAAAATCTCTCCCTAAAATTAAATACCCATTAAAAATTCTCTTCAAGAATTAAGATTAACAAAAATGATATTCTAGATAAAAACTGTTGTGAGAAAAATTATCATCAGTACATTCCTGCTGAAGGAAACACAAAAGG-AAAAAAATAGGCAAAAATAAAGATTATCTCATATGGAATTTCAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29874007 1982 + 172585720 CTCATTActtgccataataaagtaatgagattttctctcctaattaaacatctaaaaaatggaacaaaatatataaagcaatgattttaagacactacacaAGACAGGGTTGGTTATGCCCCATGACCTATCCGCCTGATTGGAACAACTTGTAATAGACAAGGACTTAGGTGGAGTCCTGAGAAGGACATTACCTTAGTAGTAGGGGCTAAATTAACCTCAGAATAAATGATGTTCTGGATCTACATTAACAAATAAAAAATATATGCCTCAAAATAAGCCTAATAGTTTAGGGGAAATACAGACATAGAGAGAGAGAGAAGATTTTT-TTaaagactcacatagaacttgtttaaataaaaaatccaaaatat-aagtgaaaaataaattgcacggaataaacagtag-attaattactgcagaagaaaaaaaatcaaggaacttggagacatagacataaaaacaatccaaaatgaagcatagataaattgttttaataaaatggacaaagcatcaatgacctgtgccataatttcaagtagtctaacatatgtgcaactggagtcctaaagaagtgtatgattttaaaaaattaaagaaataatgactgaatttttccaaatttgataaaatatgtaatc--tagatccaagaag-ccaataaaaattaagtagaataaatattagaaaacattacaatgaacatcataaactaattgctaaaaaagttataaagaaaaatcttaaaatcagcaagagaaaaatcaacactgttattacagaggaataaagataagaatggtagcatacatcccaccagaaattgtgtgagacaggtaatggagcaacagctttaaagcacataaacaaaagtctggcaatttaaaattttctatacagagtaaacaccttttaaaaataagggcaaagtactttttcatgccaacaaaagctgaagcaaattattaccagcagaacgttactacaagaaatagttaaggaaggtctttta-----aaaaaaaagaaaaaaa-gataccagatgaaaatcagtgtctccatgaagggacaaaatgtgccagaaattataaatacgtgtttaagtgtaaaagacattgttattatttttaattaccttaaaaataatagaatttttc--aaaaaaaaaaaaa-cagaattgcagtgtcttggatactaataacataagtaaaagtaaaatgtgtgacattaaaatcacaaagcatgagcagggagatggaagtaccgtatggcatggctatagcaatatatcttaaatggtgtaatattatgtgaagaaatattttgtgaatttaaaatgcacattgtaaaccctagagtaaccacaaaaatataaaataaaaaggaataaataaaagtgcaatagtgaaaatttaatgaaag---taaaatattcccatagaaaacagtaaatgaaagaagaagcaataacagacaaataggacaaatgaaaggcaaactgttggaggac--------------------------------------------------------------------------------aaatttaaattcaattctataaaaaatgtatcagatttaaattgtgcaaacactccaactaaaacaaggagcttatcacgttggcttaatgggtatgcaaatgcagttacatagaaggaataacttttagtatttgatagcaAACTAATGCAGGGACAgtaatgtatgttcagcttgattgtggta-----tacacaaagtatacatatactaaaacatcatgctgtgaagcctaaatatat-caattttaatctgttaattatatttcaataaagctggggaaaAACAAGGTATTTTCAATGGCTAAAAAAAAAACTCTCCCTAAAATTGAATACCCATTAAAAATTATCTTCAAGAATTAAGATTAACAAAAATGATATTCTAGACAAAAACTAATGTAAGAAAAATTATCATCAGTATATTTCTGTTGAAGGAAACACAAAAGG-AAAAAAATAGGCAAAAATAAAGATTCTCTCTTGCGGAATTTCAGT
i rheMac8.chr4             C 0 I 1241
s macFas5.chr4             29536982 1983 - 170955103 CTCATTActtgccataataaagtaatgagattttctctcctaattaaacatctaaaaaatggaacaaaatatataaagcaatgattttaagacactatacaAGACAGGGTTGGTTATGCCCCATGACCTATCCGCCTGATTGGAACAACTTGTAATAGACAAGGACTTAGGTGGAGTCCTGAGAAGGACATTACCTTAGTAGTAGGGGCTAAATTAACCTCAGAATAAATGATGTTCTGGATCTACATTAACAAATAAAAAATATATGCCTCAAAATAAGCCTAATAGTTTAGGGGAAATACAGACATAGAGAGAGAGAGAAGATTTTT-TTaaagactcacatagaacttgtttaaataaaaaatccaaaatat-aagtgaaaaataaattgcatggaataaacagtag-attaattactgcagaagaaaaaaaatcaaggaacttggagacatagacataaaaacaatccaaaatgaagcatagataaattgttttaataaaatggacaaagcatcaatgacctgtgccataatttcaagtagtctaacatatgtgcaactggagtcctaaagaagtgtatgattttaaaaaattaaagaaataatgactgaatttttccaaatttgataaaatatgtaatc--tagatccaagaag-ccaataaaaattaagtagaataaatattagaaaacattacaatgaacatcataaactaattgctaaaaaagttataaagaaaaatcttaaaatcagcaagagaaaaatcaacactgttattacagaggaataaagataagaatggtagcatacatcccaccagaaattgtgtgagacaggtaatggagcaacagctttaaagcacataaacaaaagtctggcaatttaaaattttctatacagagtaaacaccttttaaaaataagggcaaagtactttttcatgccaacaaaagctgaagcaaattattaccagcagaacgttactacaagaaatagttaaggaaggtctttt------aaaaaacagaaaaaaa-gataccagatgaaaatcagtgtctccatgaagggacaaaatgtgccagaaattataaatacgtgtttaagtgtaaaagacattgttattatttttaattaccttaaaaataatagaatttttcaaaaaaaaaaaaaaa-cagaattgcagtgtcttggatactaataacataagtaaaagtaaaatgtgtgacattaaaatcacaaagcatgagcagggagatggaagtaccgtatggcatggctatagcaatatatcttaaatggtgtaatattatgtgaagaaatattttgtgattttaaaatgtacattgtaaacactagagtaaccacaaaaatataaaataaaaaggaataaataaaagtgcaatagtgaaaatttaatgaaag---taaaatattcccatagaaaacagtaaatgaaagaagaagcaataacagacaaataggacaaatgaaaggaaaactgttggaggac--------------------------------------------------------------------------------aaatttaaattcaattctataaaaaatgtatcagatttaaattgtgcaaacactccaactaaaacaaggagcttatcacattggcttaatgggtatgcaaatgcagctacatagaaggaataacttttagtatttgatagcaAACTAATGCAGGGACAgtaatgtatgttcagcttgattgtggta-----tacacaaagtatacatatactaaaacatcatgctgtgaagcctaaatatat-caattttaatctgttaattatatttcaataaagctggggaaaAACAAGGTATTTTCAATGGCTAAAAAAAAAACTCTCCCTAAAATTGAATACCCATTAAAAATTATCTTCAAGAATTAAGATTAACAAAAATGATATTCTAGACAAAAACTAATGTAAGAAAAATTATCATCAGTATATTTCTGTTGAAGGAAACACAAAAGG-AAAAAAATAGGCAAAAATAAAGATTATCTCTTGCAGAATTTCAGT
i macFas5.chr4             C 0 I 1241
s macNem1.NW_012011356v1    2523408 1981 -   2996164 CTCATTActtgccataataaagtaatgagattttctctcctaattaaatatctaaaaaatggaacaaaatatataaagcaatgattttaagacactatacaAGACAGGGTTGGTTATGCCCCATGAcctatccgcctgattggaacaacttgtaatagacaaggacttaggtggagtcctgagaaggacattaccttagtagtaggggctaaattaacctcagaataaatgatgttctggatctacattaacaaatAAAAAATATATGCCTCAAAATAAGCCTAATAGTTTAGGGGAAATACAGACATAGAAAGAGAGAGAAGATTTTT-TTaaagactcacatagaacttgtttaaataaaaaatccaaaatat-aagtgaaaaataaattgcatggaataaacagtag-attaattactgcagaagaaaaaaaatcaaggaacttggagacatagacataaaaacaatccaaaatgaagcatagataaattgttttaataaaatggacaaagcatcaatgacctgtgccataatttcaagtagtctaacatatgtgcaactggagtcctaaagaagtgtatgattttaaaaaattaaagaaataatgactgaatttttccaaatttgataaaatatgtaatc--tagatccaagaag-ccaataaaaattaagtagaataaatattagaaaacattacaatgaacatcataaactaattgctaaaaaagttataaagaaaaatcttaaaatcagcaagagaaaaatcaacactgttattacagaggaataaagataagaatggtagcatacatcccaccagaaattgtgtgagacaggtaatggagcaacagctttaaagcacataaacaaaagtctggcaatttaaaattttctatacagagtaaacaccttttaaaaataagggcaaagtactttttcatgccaacaaaagctgaagcaaattattaccagcagaacgttactacaagaagtagttaaggaaggtctttt------aaaaaacagaaaaaaa-gataccagatgaaaatcagtgtctccatgaagggacaaaatgtgccagaaattataaatacatgtttaagtgtaaaagacattgttattatttttaattaccttaaaaataatagaatttttc-aaaaaaaaacaaaa-cagaattgcagtgtcttggatactaataacataagtaaaagtaaaatgtgtgacattaaaatcacaaagcatgagcagggagatggaagtaccgtatggcatggctatagcaatatatcttaaatggtgtaatattatgtgaagaaatattttttgaatttaaaatgcacattgtaaaccctagagtaaccacaaaaatataaaataaaaaggaataaataaaagtgcaatagtgaaaatttaatgaaag---taaaatattcccatagaaaacagtaaatgaaagaagaagcaataacagacaaataggacaaatgaaaggaaaactgttggaggac--------------------------------------------------------------------------------aaatttaaattcaattctataaaaaatgtatcagatttaaattgtgcaaacactccaactaaaacaaggagcttatcacattggcttaatgggtatgcaaatgcagttacatagaaggaataacttttagtatttgatagcaAACTAATGCAGGGACAgtaatgtatgttcagcttgattgtggta-----tacacaaagtatacatatactaaaacatcatgctgtgaagcctaaatatat-cgattttaatctgttaattatatttcaataaagctggggaaaAACAAGGTATTTTCAATGGCT-AAAAAAAAACTCTCCCTAAAATTGAATACCCATTAAAAATTATCTTCAAGAATTAAGATTAACAAAAATGATATTCTAGACAAAAACTAATGTAAGAAAAATTATCATCAGTGTATTTCTGTTGAAGGAAACACAAAAGG-AAAAAAATAGGCAAAAATAAAGATTCTCTCTTGCGGAATTTCAGT
i macNem1.NW_012011356v1   C 0 I 1241
s cerAty1.NW_012002711v1     275752 1981 +    766320 CTCATTActcgccataataaagtaatgagattttctctcctaattaaacatctaaaaaatggaacaaaatatttaaagcaatgattttaagacactatacaAGacagggttgggtatgccccgtgacccatctgcctgattggaacaacttgtgatagacaaggacttaggtggagtcctgagaaggacattatcttagtagtgggggctaaattagcctcagaataaatgacgttctggatctacattaacaaatAAAAAATATGTGCCTCAAAATAAGCCTAATAGTTTAGGGGAAATACAGACATAGAAAGAGAGAGAAGATTTTT-TTaaagactcacatagaacttgtttaaataaaaaatgcaaaatat-aagtgaaaaataaattgcatggaataaatagtag-attaattactgcagaagaaaaaaaatcaaggaacttggagacatagacataaaaacaatccaaaacgaagcatagataaattgttttaataaaatggacaaagcatcaatgacctatgccataatttcaagtagtctaacatatgtgcaactgaagtcctaaagaagtgtatgtttttaaaaaattaaagaaataatgactgaatttttccaaatttgataaaacatgtaatc--tagatccaagaagcccaataaaaattaaatagaataaatattagaaaacattacaatgaacatcataaactaattgctaaaaaagttataaggaaaaatcttaaaatcagcaagagaaaaatcaacactgttattacagaggaataaagataagaatgatagcatacatcccaccagaaattgtgtgagacaggtaatggagcaacagctttaaagcacataaacaaaagtctggcaatttaaaattttatatacagagtaaataccttttaaaaataagggcaaagtactttttcatgccaacaaaagctgaagtaaataattaccagcagaacgttactacaagaaatagttaaggaaggtcttta------aaaaaa---aaaaaaa-gataccagatgaaaatcagtgtctccatgaagggataaaaagtgccagaaattataaatacgcgtttaagtgtaaaagacattgttattatttttaattaccttaaaaataatagaatttttc---aaaaaaaaaaaa-cagaattgcagtgtcttggttactaacaacataagtaaaagtaaaatgtgtgacattaaaatcacaaagcatgagcagggtgatggaagtaccatatggcatggctatagcaatgtatcttaaatgatgtaatattatgtgaagaaatattttgtgaatttaaaatgtacattgtaaactctagattaaccacaaaaatataaaacaaaaaggaataaataaaagggcaatagtgaaaatttaatgaaagtattaaaatattcccatagaaaacagtaaatgaaagaagaagcaataacagacaaataggacaaatgaaaggcaaacagttggaggac--------------------------------------------------------------------------------aaatttaaattcaattctataaaaaatttatcagatttaaattgtgcaaacactccaactaaaacaaggagcttatcacattggcttaatgggtatgcaaatgcagttacatagaaggaataacttttagtatttgatagcaAACTAATGCAGGGACAgtaatgtatgtttagcttgattgtggta-----tacacaaagtatatacatactaaaacatcatgctgtgaagcctaaatatat-caattttaatctgttaattgtatttcaataaagctggggaaaAACAAGGtattttcaatggctaaaaaaaaaactctccctaaaattgaatacccattaaaaattatcttcaagaattaagattaacaaaaatgatattctaaacaaaaactaatgtaagaaaaattatcaccagtacatttctgctgaaggaaacacaaaagg-aAAAAAATAGGCAAAAATAAAGGTTGTCTCTTACGGAATTTCAGT
i cerAty1.NW_012002711v1   C 0 I 1241
s chlSab2.chr17            28777976 1976 -  71996105 CTCATTActtgccataataaagtaataagattttctcccctaattaaacatctaaaaaatggaacaaaatacataaagtaatgattttaagacactatacaAGacagggttgggtatgccccgtgacccatccgcctgattggaacaacttgtaatagacaaggacttaggtggagtcctgagaaggacattaccttagtagtgggggctaaattaacctcagaataaatgatgttctggatctacattagcaaatAAAAAATATATACCTCAAAATAAGCCTAATAGTTTAGGGGAAATACAGACATAGAAAGAGAGAGAAGATTTTT-TTaaagactcacatagaacttgtttaaataaaaaatccaaaatat-aagtgaaaaataaattgcatggaataaacagtag-attaattactgcagaagaaaaaaaatcaaggaacttggagacatagacataaaaacaatccaaaatgaagcatagataaattgttttaataaaatggacaaaacatcaatgacctatgccataatttcaagtagtctaacatatgtgcagctggagtcctaaagaagtgtatgagtttaaaaaattaaagaaacaatgactgaatttttccaaatttggtaaaatatgtaatc--tagatccaagaagcccaataaaaattaagtagaataaatattagaaaacattacaatgaacatcataaactaattgctaaaaaaattataaagaaacatcttaaaatcagcaagagaaaaatcaacactgttattaaagaggaataaagataagaatggtagcatacatcccaccagaaattgtgtgagacaggtaatggagcaacagctttaaagcacataaacaaaagtctggcaatgtaaaattttatatacagagtaaacaccttttaaaaataagggcaaagtactttttcatgccaacaaaagctgaagtaaattattaccagcagaatgttactacaagaaatagttaaagaaggtcttt-------aaaaaaaagaaaaaaa-gataccagatgaaaatcagtgtctccgtgaagggataaaaagtgccagaaattataaatacgtgtttaagtgcaaaagacattgttattatttttaattaccttaaaaataatagaatttttc------aaaaaaaaa-cagaatttcagtgtcttggatactaataacgtaagtaaaagtaaaatgtgtgacattaaaatcacaaagcatgagcagggagatggaagtaccgtatggcatggctatagcaatatatcttaaatgatgtaatattatgtgaagaaatattttgtgaatttaaaatgtacattgtaaactctagagtaaccacaaaaatataaaacaaaaaggaataaataaaagggcaatagtgaaaatttaatgaaag---taaaatattcccatagaaaacagtaaatgaaagaagaagcaataacagacaaataggacaaatgaaaggcaaacagttggaggac--------------------------------------------------------------------------------aaatttaaatgcaattctataaaaaatatatcagatttaaattgtgcaaacactccaactaaaacaaggagcttatcacattggcttaatgggtatgcaaatgcagttacatagaaggaataacttttagtatttgatagcaAACTAATGCAGGGACAgtaatgtatgttcagcttgattgtggta-----tacacaaagtatacatatactaaaacatcatgctgtgaagcctaaatatat-caattttaatctgttaattatattttaataaagctggggaaaAACAAGGTATTTTCAATGGCT-AAAAAAAAACTCTCCCTAAAATTGAATACCCATTAAAAATTATCTTCAAGAATTAAGATTAACAAAAATGATATTCTAGACAAAAACTAATGTAAGAAAAGTTATCATCAGTATATTTCTGTTGAAGGAAACACAAAAGG-AAAAAAATAGGCAAAAATAAAGATTATCTCTTGTGGAATTTCAGT
i chlSab2.chr17            C 0 I 1239
s manLeu1.NW_012099655v1     260008 1972 -    352859 CTCActacttgccataataaagtaatgagattttctctcctaattaaacatctaaaaaatggaacaaaatatttaaagcaatgattttaagacactatacaAGACAGGGTTGGGTACGCCCCATGACCCATCTGCCTGATTGGAACAACTTGTGATAGACAAGGACTTAGGTGGAGTCCTGAGAAGGACATTATCTTAGTAGTGGGGGCTAAATTAACCTCAGAATAAATGATGTTCTGTATCTACATTAGCAAATAAAAAATGTATGCCTCAAAATAAGCCTAATAATTTAGGGGAAATACAGACAT----AGAGAGAGAAGATTTTTGTTTaagactcacatagaacttgtttaaataaaaaatctaaaatat-gagtgaaaaataaattgcatggaataaatagtag-attaattactgcagaagaaaaaaaatcaaggaacttggagacgtagacataaaaacaatccaaaatgaagcatagataaattgttttaataaaatggacaaagcatcaatgacctatgtcataatttcaagtagtctaacatatgtgcaactggagtcctaaat-agtgtatgattttaaaaaattaaagaaataatgactgaatttttccaaatttgataaaatatgtaatc--tagatccaagaagcccaataaaaattaaatagaataaatactagaaaacattacaatgaacatcataaactaattgctaaaaaagttataaagaaaaatcttaaaatcagcaagagaaaaatcaacactgttattacagaggaataaagataagaatggtagcatacatcccaccagaaattgtgtgagacaggtaatggagcaacagctttaaagcacataaacaaaagtctggcaatttaaaattttatatacagagtaaacgccttttaaaaataaaggcaaagtactttttcatgccaacaaaagctgaagtaaattattaccagcagaacgttacgacaagaaatagttaaggaaggtcttt-------aaaaaaaagaaaaaaa-gataccagataaaaatcagtgtctccatgaagggacaaaaagtgccagaaattataaatacgtgtttaagtgtaaaagacactgttattatttttaattaccttaaaaataatataatttttc------aaaaaaaaaccagaattgcagtgtcttggatactaataacataagtaaaagtgaaatgtgtgacattaaaatcacaaagcatgaacagggagatggaagtacagtatgacatggctatagcaatatatcttaaatgatgtaatattatgtgaagaaatattttatgaatttaaaatgtacattgtaaaccctagagtaaccacaaaaatataaaataaaaaggaataaataaaagtgcaatagtgaaaatttaatgaaag---taaaatatttccatagaaaacagtaaatgaaagaagaagcaataacagacaaataggacaaatgaaaggcaaacagttggaggac--------------------------------------------------------------------------------aaatttaaattcaattctataaaaaatgtatcagatttaaattgtgcaaacactccaactaaaacaaggagcttatcacattggcttaatgggtatgcaaatgcagttacatagaaggaataacttttagtatttgatagcaAACTAATGCAGGGATAgtaatgtatgttcagcttgattgtggta-----tacacaaagtatacatatactaaaacatcatgctgtgaagcctaaatatat-caattttaatctgttaattatatttcaataaagctggggaaaAACAAGGTATTTTCAATGGCT--AAAAAAAACTCTCCCTAAAATTGAATACCCATTAAAAATTATCTTCAAGAATTAAGATTAACAAAAATGATATTCTAGACAAAAACTAATGTAAGAAAAATTATCATCAGTATATTTCTGTTGAAGGAAACACAAAAGG-AAAAAAATAGGCAAAAATAAAGATTATCTCTTGCGGAATTTCAGT
i manLeu1.NW_012099655v1   C 0 I 1241
e dasNov3.JH570741           497930 32941 +   1532071 I
e proCoq1.NW_012152574v1     386706 6348 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2050130 10377 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=865095.000000
s hg38.chr6_GL000254v2_alt   639473 223 +   4827813 AAGATACTTCTATTACTTGGAAAATTCCAAAGGTTTTTGTCCTAGGAGAAATGCCAcattcttttttacacagcagattcctactctaa-ccctccccatacttcctacctccttagttctccttgccaccgaattatcctgacatatgtacttacgcgtttggttatttggggcctccatcacattaaactttatgtttgatgacattatggaatttgttttg
s panTro5.chr6             29611491 223 + 175400573 AAGATACTTTTATTACTTGGAAAATTCCAAAGGTTTTTGTCCTAGGAGAAATGCCAcattcttttttacacagcagatacctactctaa-ccctccccatacttcctacctccttagttctccttgccaccaaattatcctgacatatgtacttatgcgtttggttatttggggcctccatcacattaaactttacgtttgatgacattatggaatttgttttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29849712 223 + 173848474 AAGATACTTTTATTACTTGGAAAATTCCAAAGGTTTTTGTCCTAGGAGAAATGCCAcattcttttttacacagcagatacctactctaa-ccctccccatacttcctacctccttagttctccttgccactgaattatcctgacatatgtacttatgcgtttggttatttggggcctccatcacattaaactttacgtttgatgacattatggaatttgttttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5652625 223 +   6154872 AAGATACTTCTATTACTTGGAAAATTCCAAAGGTTTTTGTCCTAGGAGAAATGCCACGTTCTTTTTTACACAGCAGATACCTActctaa-ccctccccatacttcctacctccttagttctccttgccaccgaattatcctgacatatgtacttatgcatttggttatttggggcctccatcacattaaactttacgtttgatgacattatggaatttgttttg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29877230 224 + 172585720 AAGATACTTCTGTTACTTGGAAAATTtcaaaggttttcgtcctaggagagatgccacaatcttttttacacagcagatacctactctaatccctccctatacttcctacctccttagttctcctggccacataattatcctgacatatgtacttatgcgtttggttattttgggcctccatcacattaaactttaagtttggtgacattatggaatttgttttg
i rheMac8.chr4             I 1241 C 0
s macFas5.chr4             29540206 224 - 170955103 AAGATACTTCTGTTACTTGGAAAATTTCAAAGGTTTTCGTCCTAGGAGAGATGCCAcaatcttttttacacagcagatacctactctaatccctccctatacttcctacctccttagttctcctggccacataattatcctgacatatgtacttatgcgtttggttattttgggcctccatcacattaaactttaagtttggtgacattatggaatttgttttg
i macFas5.chr4             I 1241 C 0
s macNem1.NW_012011356v1    2526630 224 -   2996164 AAGATACTTCTGTTTCTTGGAAAATTtcaaaggttttcgtcctaggagagatgccacaatcttttttacacagcagatacctactctaatccctccctatacttcctacctccttagttctcctggccacataattatcctgacatatgtacttatgcgtttggttattttgggcctccatcacattaaactttaagtttggtgacattatggaatttgttttg
i macNem1.NW_012011356v1   I 1241 C 0
s cerAty1.NW_012002711v1     278974 224 +    766320 AAGATACTTCTGTTACTTGGAAAATTCCAAAAGTGTTTGTCCTAGAAGAAATGCCAcattcttttttacacagcagatacctactctgatccctccctatacttcctacctccttagttctcctcaccacataattatcctgacatatgtacttatgcgtttggttattttgggcctccatcacattaaactttaagtttgatgacattatggaatttgttttg
i cerAty1.NW_012002711v1   I 1241 C 0
s chlSab2.chr17            28781191 224 -  71996105 AAGATACTTCTGTTACTTGGAAAATTCCAAAGGATTTTGTCCTAGGAGAAATGCCAcaatcttttttacacagcagatacctactctaatccctccctatacttcctacctccttagttctcctggccacataattatcctgacatatgtacttatgcgtttggttattttgggcctccatcacattaaactttaagtttgatgacattatggaatttgttttg
i chlSab2.chr17            I 1239 C 0
s manLeu1.NW_012099655v1     263221 224 -    352859 AAGATATTTCTGTTACTTGGAAAATTCCAAAAGTGTTTGTCCTAGAAGAAATGCCAcattcttttttacacagcagatacctactctgatccctccctatacttcctacctccttagttctcctgaccacataattatcctgacatatgtacttatgcgtttggttattttgggcctccatcacattaaactttaagtttgatgacattatggaatttgttttg
i manLeu1.NW_012099655v1   I 1241 C 0
e dasNov3.JH570741           497930 32941 +   1532071 I
e proCoq1.NW_012152574v1     386706 6348 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2050130 10377 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=15804.000000
s hg38.chr6_GL000254v2_alt   639696 4 +   4827813 cttg
s panTro5.chr6             29611714 4 + 175400573 ctcg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29849935 4 + 173848474 ctcg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5652848 4 +   6154872 ctcg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29877454 4 + 172585720 ctcg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29540430 4 - 170955103 ctcg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2526854 4 -   2996164 cttg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     279198 4 +    766320 ctcg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28781415 4 -  71996105 cttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     263445 4 -    352859 ctcg
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2060507 4 -   2232465 CCCA
i otoGar3.GL873742         I 10377 C 0
e dasNov3.JH570741           497930 32941 +   1532071 I
e proCoq1.NW_012152574v1     386706 6348 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=430417.000000
s hg38.chr6_GL000254v2_alt   639700 84 +   4827813 ctcctgtgtttcttgaacctactacactgcctaatataatatgtg-ctcaaaatttttgAAAGAAAAATATAAACCAGGTAAACA
s panTro5.chr6             29611718 84 + 175400573 ctcctgtgtttcttgaacctactacactgcctaatacaatatgtg-ctcaaaatttttgAAAGAAAAATATAAACCAGGTAAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29849939 85 + 173848474 ctcctgtgtttcttgaacctactacactgcctaatacaatatgtgcctcaaaatttttgAAAGAAAAATATAAACCAGGTAAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5652852 84 +   6154872 ctcctgtgtttcttgaacctactacactgcctaatataatatgtg-ctcaaaatttttgAAAGAAAAGTATAAACCAGGTAAACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29877458 84 + 172585720 ctcctctgtttcttgaacctactacactgcctaatataatatgtg-ctcaaaatttttgAAAGAAAAATAAAAACCAAGTAAACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29540434 84 - 170955103 ctcctctgtttcttgaacctactacactgcctaatataatatgtg-ctcaaaatttttgAAAGAAAAATAAAAACCAAGTAAACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2526858 84 -   2996164 ctcctctgtttcttgaacctactacactgcctaatataatatgtg-ctcaaaatttttgAAAGAAAAATAAAAACCAAGTAAACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     279202 84 +    766320 ctcctctgtttcttgaacctactacactgcctaatataatatgtg-ctcaaaatttttgAAAGAAAAATAAAAACCAAGTAAACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28781419 84 -  71996105 ctcctctgtttcttgaacctactacactgcctaatataatatgtg-ctcaaaatttttgAAAGAAAAATAAAAACCAAGTAAACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     263449 84 -    352859 ctcctctgtttcttgaacctactacactgcctaatataatatgtg-ctcaaaatttttgAAAGAAAAATAAAAACCAAGTAAACT
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     393054 79 +    730504 ctcctgtgtttcttgaatctagtacactgcctgatata-----ta-ctcaaaattgttgaaagaaAAATGACAACCAAATAAAGT
i proCoq1.NW_012152574v1   I 6348 C 0
s otoGar3.GL873742          2060511 84 -   2232465 CTTCCATGTTTCTTGAACCTGCTCCACTGCCTAATATAATATCCA-CTCAAAATTACTAAAATAAAAATAAAAAACAAACTACTT
i otoGar3.GL873742         C 0 C 0
e dasNov3.JH570741           497930 32941 +   1532071 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=7908049.000000
s hg38.chr6_GL000254v2_alt   639784 1308 +   4827813 AAT----------CATTTCTTACAG-TGAAGTGATGGAAATCAGTCTTAATAGAAATCAGATATCCCTCATTAGTCCTAGTGGTGTTGCTGCCAGTCTTTAAACA---ACTTCCTACCAAAGATTTTCTTCAGAGCCATCATCACTTCTTTGTTCCTAAGGGTGTAGATTAGTGGATTCAGTACAGGGGTGACGGCGCTATACATGATGGCCATTATCCGGTCCTGAATCATGGAGGTGGCTGAAGCAGGACGAATATATGTGAAGCCCACAGGTCCATAGAAAAGACATACCACCATAAAATGGGAGGCACAAGTGGACAGAGCCTTGTGGAGTATTCTGCAGGACCTGTTCTTAAACAGAAGGAAGCCAATTACATAGAAGCAGGAGAGAAGAGTCAGAAAGAAAGCTCCCATGGATATGCTGCCTGTGACAATGGAAAGAAGCCATTGATTGAGTAATGTGTCACTACAGGCCAATTCTAAGAGCGGCTTGACATCGTAGAAGAAGTGATTGAGTTTCTGAGAGCCACAAAAACTCAGGTGTGCAGTCATGACAGAATGCATCAGAGCGTAAAAGAAGCTGATGAGCCAGGCTGCAGCTGCCAACAGAATACACACCTGGGGGTTCATGATGACAGTGTAGCGAAGAGGATTGCAGATGGCAACAAAACGGTCAAAGGCCATGATAGCCAGTAAAATGGCCTCTGTGCTTCCCAAAAAGTGGAAGAAGTGTAGCTGGGTGATACAGCCTAGAAAAGATATAGCCCTGCGACTGCACACGAGGTTTACGAGCAGCTTGGGCAGTGTCACTGAAGAATAAGAAATATCCAGACAAGAAAGGTTTCCCAGAAAAAAATACATAGGGGAGTGGAGTTGTGGTTCCAAAACAACCATCACCAATATAGATCCATTTCCAATCAAGTTTATCAGGTAAATGATTAAGAAAATCCCAAAGAAGAAAGGCTGCAGCTCCTGAACACCAGTCAGGCCAAGTAGAAGAAACTCATTCATTGTAGTGACATTCTCCATTGCT---CTGGGA-AGCAAATTTAACAATAACA--GAATTAATTTTTCTGAATTTTTAATTTTACACTGTGAGGATTAAATAAAGCAAGTTTACTATTTGGAGGAACCTAGGGGTGAGCAACAGTGTGAAGAATAGTTACGAACAGTAAAACTAAATTTATGTACAACAAAATTGAGGAAG---ACTAATATACCT--GATAAATTCTGAGCTGTTAAAATGGCACTAGACTAATAAAAGCATTATATTATGAACAAATCAGATATAGATAAAG---GGCATTTGTTTTC--AAAACTAGGAAGTGTA
s panTro5.chr6             29611802 1308 + 175400573 AAT----------CATTTCTTACAG-TGAAGTGATGGAAATCAGTCTTAATAGAAATCAGATATCCCTCATTAGTCCTAGTGGTGTTGCTGCCAGTCTTTAAACA---ACTTCCTACCAAAGATTTTCTTCAGAGCCATCATCACTTCTTTGTTCCTAAGGGTGTAGATTAGTGGATTCAGTACAGGGGTGACGGCGCTATACATGATGGCCATTATCCGGTCCTGAATCATGGAGGTGGCTGAAGCAGGACGAATATATGTGAAGACCACAGGTCCATAGAAAAGACATACCACCATAAAATGGGAGGCACAAGTGGACAGAGCCTTGTGGAGTATTCTGCAGGACCTGTTCTTAAACAGAAGGAAGCCAATTACATAGAAGTAGGAGAGAAGAGTCAGAAAGAAAGCTCCCATGGATATGCTGCCTGTGACAATGGAAAGAAGCCATTGATTGAGTAATGTGTCACTACAGGCCAATTCTAAGAGCGGCTTGACATCGCAGAAGAAGTGATTGAGTTTCTGAGAGCCACAAAAACTCAGGTGTGCAGTCATGACAGAATGCATCAGAGCGTAAAAGAAGCTGATGAGCCAGGCCGCAGCTGCCAACAGAATACACACCTGGGGGTTCATGATGACACTGTAGCGAAGAGGATTGCAGATGGCAACAAAACGGTCAAAGGCCATGATAGCCAGTAAAATGGCCTCTGTGCTTCCCAAAAAGTGGAAGAAGTGTAGCTGGGTGATACAGCCTAGAAAAGATATAGCCCTGCGACTGCACACGAGGTTTACGAGCAGCTTGGGCAGTGTCACTGAAGAATAAGAAATATCCAGACAAGAAAGGTTTCCCAGAAAAAAATACATAGGGGAGTGGAGTTGTGGTTCCAAAACAACCATCACCAATATAGATCCATTTCCAATCAAGTTTATCAGGTAAATGATTAAGAAAATCCCAAAGAAGAAAGGCTGCAGCTCCTGAACACCAGTCAGGCCAAGTAGAAGAAACTCATTCATTGTAGTGACATTCTCCATTGCT---CTGGGA-AGCAAATTTAACAATAACA--GAATTAATTTTTCTGAATTTTTAATTTTACACTGTGAGGATTAAATAAAGCAAGTTTACTATTTGGAGGAACCTAGGGATGAGCAACAGTGTGAAGAATAGTTAGGAGCAGTAAAACTAAATTTATGTACAACAAAATTGAGGAAG---GCTAATATACCT--GATAAATTCTGAGCTGTTAAAATGGCACTAGACTAATAAAAGCATTATATTATGAACAAATCAGATATAGATAAAG---GGCATTTGTTTTC--AAAACTAGGAAGTGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29850024 1311 + 173848474 AAT----------CATTTCTTACAG-TGAAGTGATGGAAATCAGTCTTAATAGAAATCAGATATCCCTCATTAGTCCTAGTGGTGTTGCTGCCAGTCTTTAAACA---ACTTCCTACCAAAGATTTTCTTCAGAGCCATCATCACTTCTTTGTTCCTAAGGGTGTAGATTAGTGGATTCAGTACAGGGGTGACGGCACTATACATGATGGCCATTATCCGGTCCTGAATCATGGAGGTGGCTGAAGCAGGACGAATATATGTGAAGACCACAGGTCCATAGAAAAGACATACCACCATAAAATGGGAGGCACAAGTGGACAGAGCCTTGTGGAGTATTCTGCAGGACCTGTTCTTAAACAGAAGGAAGCCAATTACATAGAAGTAGGAGAGAAGAGTCAGAAAGAAAGCTCCCATGGATATGCTGCCTGTGACAATGGAAAGAAGCCATTGATTGAGTAATGTGTCACTACAGGCCAATTCTAAGAGCGGCTTGACATCGCAGAAGAAGTGATTGAGTTTCTGAGAGCCACAAAAACTCAGGTGTGCAGTCATGACAGAATGCATCAGAGCGTAAAAGAAGCTGATGAGCCAGGCCGCAGCTGCCAACAGAATACACACCTGGGGGTTCATGATGACACTGTAGCGAAGAGGATTGCAGATGGCAACAAAACGGTCAAAGGCCATGATAGCCAGTAAAATGGCCTCTGTGCTTCCCAAAAAGTGGAAGAAGTGTAGCTGGGTGATACAGCCTAGAAAAGATATAGCCCTGCGACTGCACACGAGGTTTACGAGCAGCTTGGGCAGTGTCACTGAAGAATAAGAAATATCCAGACAAGAAAGGTTTCCCAGGAAAAAATACATAGGGGAGTGGAGTTGTGGTTCCAAAACAACCATCACCAATATAGATCCATTTCCAATCAAGTTTATCAGGTAAATGATTAAGAAAATCCCAAAGAAGAAAGGCTGCAGCTCCTGAACACCAGTCAGGCCAAGTAGAAGAAACTCATTCATTGTAGTGACATTCTCCATTGCT---CTGGGA-AGCAAATTTAACAATAACA--GAATTAATTTTTCTGAATTTTTAATTTTACACTGTGAGGATTAAATAAAGCAAGTTTACTATTTGGAGGAACCTAGGGATGAGCAACAGTGTGAAGAATAGTTAGGAACAGTAAAACTAAATTTATGTACAACAAAATTGAGGAAG---ACTAATATACCT--GATAAATTCTGAGCTGTTAAAATGGCACTAGACTAATAAAAGCATTATATTATGAACAAATCAGATATAGATAAAGGGCGGCATTTGTTTTC--AAAACTAGGAAGTGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5652936 1308 +   6154872 AAT----------CATTTCTTACAG-TGAAGTGACGGAAATCAGTCTTAATAGAAATCAGATATCCCTCATTAGTCCTAGTGGTGTTGCTGCCAGTCTTTAAACA---ACTTCCTACCAAAGATTTTCTTCAGAACCATCATCACTTCTTTGTTCCTAAGGGTGTAGATTAGTGGATTCAGTACAGGGGTGACGGCACTGTACGTGATGGCCATTATCCGGTCCTGAATCATGGAGGTGGCTGAAGCAGGACGAATATATGTGAAGCCCACAGGTCCATAGAAAAGACATACCACCATAAAATGGGAGGCACAAGTGGACAGAGCCTTATGGAGTATTCTGCAGGACCTGTTCTTAAACAGAAGGAAGCCAATTACATAGAAGTAGGAGAGAAGAGTCAGAAAGAAAGCTCCCATGGATATGCTGCCTGTGACAATGGAAAGAAGCCATTGATTGAGTAATGTGTCACTACAGGCCAGTTCTAAGAGTGGCTTGACATCGCAGAAGAAGTGATTGAGTTTCTGAGAGCCACAAAAACTCAGGTGTGCAGTCATGACAGAATGCATCAGAGCATAAAAGAAGCTGATGAGCCAGGCCGCAGCTGCCAACAGAATACACACCTGGGGGTTCATGATGACAGTGTAGCGAAGAGGATTGCAGATGGCAACAAAACGGTCAAAAGCCATGATAGCCAGTAAAATGGCCTCTGTGCTTCCCAAAAAGTGGAAGAAGTGTAGCTGGGTGATACAGCCTAGAAAAGATATAGCCCTGCGACTGCACACGAGGTTTACGAGCAGCTTGGGCAGTGTCACTGAAGAATAAGAAATATCCAGACAAGAAAGGTTTCCCAGAAAAAAATACATAGGGGAGTGAAGCTGTGGTTCCAAAACAACCATCACCAATATAGATCCATTTCCAATCAAGTTTATCAGGTAAATGATTAAGAAAATCCCAAAGAAGAAAGGCTGCAGCTCCTGAACACCAGTCAGGCCAAGTAGAAGAAACTCATTCATTGTAGTGACATTCTCCATTGCT---CTGGGA-AGCAAATTTAACAATAACA--GAATTAATTTTCCTGAATTTTTAATTTTACACTGTGAGGATTAAATAAAGCAAGTTTACTATTTGGAGGAACCTAGGGGTGAGCAACGGTGTGAAGAATAGTTACGAACAGTAAAACTAAATTTATGTACAACAAAATTGAGGAAG---ACTAATATACCT--GATAAATTCTGAGCTGTTAAAATGGCACTAGACTAATAAAAGCATTATATTATGAACAAATCAGATATAGATAGAG---GGCATTTGTTTTC--AAAACTAGGAAGTGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29877542 1245 + 172585720 AAT----------CATTTCTTACAG-TGAAGTGATGGAAATCA--CTCAATAGAAATCAGATATCCCTCATTAGTCCTAGTGGTGTTGCTGCCAGTCTTTAAACA---ACTTCCTCCCAAAGATTTTCTTCAGAGCCATCATCACTTCTTTGTTCCTAAGGGTGTAGATCAATGGGTTCAGGACAGGGGTGACGGTGCTATATATGATGGCCATTATCCGGTCCTGAATCATGAAGGTGGCTGAAGCAGGACGAATATATGTGAGGCCCACAGGTCCATAGAAAAGACATACCACCATAAAATGGGAGGCACAAGTGGACAGAGCCTTATGGAGTATTCTGCAGGACCTGTTCTTAAACAGAAGGAAGCCAATTATATAGAAGTAGGAAAGAAGAGTCAGAAAGAACCCTCCCATGGATATGCTGCCTGTGACAATGGAAAGAAGCCATTGATTGAGTAGTGTGTTACTACAGGCTAGTTCTAAGAGCGGCTTGACATCGCAGAAGAAGTGATTGAGTTTCTGAGAGCCACAAAAACTCAGGTGTGCAGTCATGACAGAATGCATCAGAGCATAAAAGAAGCTGATGAGCCACGCCCCAGCCGCCAACAGAATACACACCTGGGGGTTCATGATGACAGTGTAGCGGAGAGGATTGCAGATAGCAACAAAACGGTCAAAGGCCATGATAGCCAGTAAAATGGCCTCTGTACTTCCCAGAAAGTGGAAGAAGTGTAGCTGGGTGATACAGCCAAGAAAAGATAAAGCCCTGCGAGTGGAGACAAGGTTTACGAGCAGCTTGGGCAGTGTCACTGAAGAATAGCAAATATCCAGACAAGAAAGGTTTCCCAGAAAAAAATACATAGGGGAATGGAGTTGTGGTTCCAAAACAACCATCACCAATATAGATCCATTTCCAATCAAGTTTATCAGGTAAATGATTAAGAAAATCCCAAAGAAGAGAGGCTGCAGCTCCTGAACACCACTCAGGCCAAGTAGAAGAAACTCATTCATTGTAGTGACATTCTCCATTGCT---CTGGGA-AGCAAATTTAACAATAACT--GAATTAATTTTTCTGAAGTTTTAATTTTATACGATGAGGATTAAATA----AAGTTTACT---------------------------------------------------------AAAATTTATGTACAACAAAATTGAGGAAG---ACTAATATACCT--GATAAATTCTGAGCTGTTGAAATGGCACTAGAGTAATAAGAGCATTATATTATGAACAAATCAGATATAGATAAAG---AGCATTTGTTTTC--AAAACTAAGAAGTGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29540518 1245 - 170955103 AAT----------CATTTCTTACAG-TGAAGTGATGGAAATCA--CTCAATAGAAATCAGATATCCCTCATTAGTCCTAGTGGTGTTGCTGCCAGTCTTTAAACA---ACTTCCTCCCAAAGATTTTCTTCAGAGCCATCATCACTTCTTTGTTCCTAAGGGTGTAGATCAATGGGTTCAGGACAGGGGTGACAGTGCTATATATGATGGCCATTATCTGGTCCTGAATCATGAAGGTGGCTGAAGCAGGACGAATATATGTGAGGCCCACAGGTCCATAGAAAAGACATACCACCATAAAATGGGAGGCACAAGTGGACAGAGCCTTATGGAGTATTCTGCAGGACCTGTTCTTAAACAGAAGGAAGCCAATTATATAGAAGTAGGAAAGAAGAGTCAGAAAGAACCCTCCCATGGATATGCTGCCTGTGACAATGGAAAGAAGCCATTGATTGAGTAGTGTGTTACTACAGGCTAGTTCTAAGAGCGGCTTGACATCGCAGAAGAAGTGATTGAGTTTCTGAGAGCCACAAAAACTCAGGTGTGCAGTCATGACAGAATGCATCAGAGCATAAAAGAAGCTGATGAGCCACGCCCCAGCCGCCAACAGAATACACACCTGGGGGTTCATGATGACAGTGTAGCGGAGAGGATTGCAGATAGCAACAAAACGGTCAAAGGCCATGATAGCCAGTAAAATGGCCTCTGTACTTCCCAGAAAGTGGAAGAAGTGTAGCTGGGTGATACAGCCAAGAAAAGATATAGCCCTGCGAGTGGAGACAAGGTTTACGAGCAGCTTGGGCAGTGTCACTGAAGAATAGCAAATATCCAGACAAGAAAGGTTTCCCAGAAAAAAATACATAGGGGAATGGAGTTGTGGTTCCAAAACAACCATCACCAATATAGATCCATTTCCAATCAAGTTTATCAGGTAAATGATTAAGAAAATCCCAAAGAAGAGAGGCTGCAGCTCCTGAACACCAGTCAGGCCAAGTAGAAGAAACTCATTCATTGTAGTGACATTCTCCATTGCT---CTGGGA-AGCAAATTTAACAATAACT--GAATTAATTTTTCTGAAGTTTTAATTTTATACGATGAGGATTAAATA----AAGTTTACT---------------------------------------------------------AAAATTTATGTACAACAAAATTGAGGAAG---ACTAATATACCT--GATAAATTCTGAGCTGTTGAAATGGCACTAGAGTAATAAGAGCATTATATTATGAACAAATCAGATATAGATAAAG---AGCATTTGTTTTC--AAAACTAAGAAGTGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2526942 1249 -   2996164 AAT----------CATTTCTTACAG-TGAAGTGATGGAAATCA--CTCAATAGAAATCAGATATCCCTCATTAGTCCTAGTGGTGTTGCTGCCAGTCTTTAAACA---ACTTCCTCCCAAAGATTTTCTTCAGAGCCATCATCACTTCTTTGTTCCTAAGGGTGTAGATCAATGGGTTCAGGACAGGGGTGACGGTGCTATATATGATGGCCATTATCCGGTCCTGAATCATGAAGGTGGCTGAAGCAGGACGAATATATGTGAGGCCCACAGGTCCATAGAAAAGACATACCACCATAAAATGGGAGGCACAAGTGGACAGAGCCTTATGGAGTATTCTGCAGGACCTGTTCTTAAACAGAAGGAAGCCAATTATATAGAAGTAGGAGAGAAGAGTCAGAAAGAACCCTCCCATGGATATGCTGCCTGTGACAATGGAAAGAAGCCATTGATTGAGTATTGTGTTACTACAGGCCAGTTCTAAGAGCGGCTTGACATCGCAGAAGAAGTGATTGAGTTTCTGAGAGCCACAAAAACTCAGGTGTGCAGTCATGACAGAATGCATCAGAGCATAAAAGAAGCTGATGAGCCACGCCCCAGCCGCCAACAGAATACACACCTGGGGGTTCATGATGACAGTGTAGCGGAGAGGATTGCAGATAGCAACAAAACGGTCAAAGGCCATGATAGCCAGTAAAATGGCCTCTGTACTTCCCAGAAAGTGGAAGAAGTGTAGCTGGGTGATACAGCCAAGAAAAGATATAGCCCTGTGAGTGGAGACAAGGTTTACGAGCAGCTTGGGCAGTGTCACTGAAGAATAGCAAATATCCAGACAAGAAAGGTTTCCCAGAAAAAAATACATAGGGGAATGGAGTTGTGGTTCCAAAACAACCATCACCAATATAGATCCATTTCCTATCAAGTTTATCAGGTAAATGATTAAGAAAATCCCAAAGAAGAGAGGCTGCAGCTCCTGAACACCAGTCAGGCCAAGTAGAAGAAACTCATTCATTGTAGTGACATTCTCCATTGCT---CTGGGA-AGCAAATTTAACAATAACT--GAATTAATTTTTCTGAAGTTTTAATTTTATACGATGAGGATTAAATAAAGTAAGTTTACT---------------------------------------------------------AAAATTTATGTACAACAAAATTGAGGAAG---ACTAATATACCT--GATAAATTCCGAGCTGTTGAAATGGCACTAGAGTAATAAGAGCATTATATTATGAACAAATCAGATATAGATAAAG---AGCATTTGTTTTC--AAAACTAAGAAGTGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     279286 1305 +    766320 AAT----------CATTTCTTACAG-TGAAGTGATGGAAATCA--CTCAATAGAAATCAGATATCCCTCATTAGTCCTAGTGGTGCTGCTGCCAGTCTTTAAACA---ACTTCCTCCCAAAGATTTTCTTCAGAGCCATCATCACTTCTTTGTTCCTAAGGGTGTAGATCAATGGGTTCAGGACAGGGGTGATGGTGCTATATATGATGGCCATTATCCGGTCCTGAATCATGAAGGTGGCTGAAGCAGGACGAATATATGTGAGGCCCACAGGTCCATAGAAAAGACATACCACCATAAAATGGGAGGCACAAGTGGACAGAGCCTTATGGAGTATTCTGCAGGACCTGTTCTTAAACAGAAGGAAGCCAATTATATAGAAGTAGGAGAGAAGAGTCAGAAAGAACCCTCCCATGGATATGCTGCCTGTGACAATGGAAAGAAGCCATTGATTGAGTAGTGTGTTACTACAGGCCAGTTCTAAGAGCGGCTTGACATCGCAGAAGAAGTGATTGAGTTTCTGAGAGCCACAAAAACTCAGGTGTGCAGTCATGACAGAATGCATCAGAGCATAAAAGAAGCTGATGAGCCATGCCCCAGACGCCAACAGAATACACACCTGGGGGTTCATGATAACAGTGTAGCGGAGAGGATTGCAGATAGCAACAAAACGGTCAAAGGCCATGATAGCCAGTAAAATGGCCTCTGTACTTCCCAGAAAGTGGAAGAAGTGTAGCTGGGTGATACAGCCTAGAAAAGATATAGCCCTGCGAGTGGAGACGAGGTTTACAAGCAGCTTGGGTAGTGTCACTGAAGAATAGCAAATATCCAGACAAGAAAGGTTTCCCAGAAAAAAATACATGGGGGAATGGAGTTGTGGTTCCAAAACAACCATCACCAATATAGATCCATTTCCAATCAAGTTTATCAGGTAAATTATTAAGAAAATCCCAAAGAAGAGAGGCTGCAGCTCCTGAGCACCAGTCAGGCCAAGTAGAAGAAACTCATCCATTGTAGTGACATTCTCCATTGCT---CTGGGA-AGCAAATTTAACAATAACA--GAATTAATTTTTCTGAAGTTTTAATTTTATACTGAGAGGATTAAATAAAGCAAGTTTACTATTTGGAGGAACCTAGGGGTGAGCAACAGTGTGAAGAATAGTTATGAACAGTAAAACAAAATTTATGTACAACAAAATTGAGGAAG---ACTAATATACCT--GATAAATTCTGA-CTGTTGAAATGGCACTAGAGTAATAAGAGCATTATATTATGAACAAATCAGATATAGATAAAG---AGCATTTGTTTTC--AAAACTAAGAAGTGTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28781503 1306 -  71996105 AAT----------CATTTCTTACAG-TGAAGTGATGGAAATCA--CTCAATAGAAATCAGATATCCCTCATTAGTCCTAGTGGTGTTGCTGCCAGTCTTTAAACA---ACGTCCTCCCAAAGATTTTCTTCAGAGCCATCATCACTTCTTTGTTCCTAAGGGTGTAGATCAATGGGTTCAGGACCGGGGTGACAGTGCTATATATGATGGCCATTATCCGGTCCTGAATCATGAAGGTGGCTGAAGCAGGGCGAATATATGTGAGGCCCACAGGTCCATAGAAAAGACATACCACCATAAAATGGGAGGCACAAGTGGACAGAGCCTTATGGAGTATTCTGCAGGACCTGTTCTTAAACAGAAGGAAGCCAATTATATAGAAGTAGGAGAGAAGAGTCAGAAAGAACCCTCCCATGGATATGCTGCCTGTGACAATGGAAAGAAGCCATTGATTGAGTAGTGTGTTACTACAGGCCAGTTCTAAGAGCGGCTTGACATCGCAGAAGAAGTGATTGAGTTTCTGAGAGCCACAAAAACTCAGGTGCGCAGTCATGACAGAATGCATCAGAGCATAAAAGAAGCTGATGAGCCACGCCCCAGCTGCCAACAGAATACACACCTGGGGGTTCCTGATGACAGTGTAGCGGAGAGGATTGCAGATAGCAACAAAATGGTCAAAGGCCATGATAGCCAGTAAAATGGCCTCTGTACTTCCCAGAAAGTGGAAGAAGTGTAGCTGGGTGATACAGCCGAGAAAAGATATAGCCCTGCGAGTGGAGACAAGGTTTACGAGCAGCTTGGGCAGTGTCACTGAAGAATAGCAAATATCCAGACAAGAAAGGTTTCCCAGAAAAAAATACATGGGGGAATGGAGTTGTGGTTCCAAAATAACCATCACCAATATAGATCCATTTCCAATCAAGTTTATCAGGTAAATGATTAAGAAAATCCCAAAGAAGAGAGGCTGCAGCTCCTGAACACCAGTCAGGCCAAGTAGAAGAAACTCATTCATTGTAGTGACATTCTCCATTGCT---CTGGGA-AGCAAATTTAACAATAACA--GAATTAATTTTTCTGAAGTTTTAATTTTATACTGAGAGGATTAAATAAAGCAAGTTTACTATTTGGAGGAACCTAGGGGTGAGCAACAGTGTGAAGAACAGTTATGAACAGTAGAACAAAATGTATGTACAACAAAATTGAGAAAG---ACTAATATACCT--GATAAATTCTGAGCTGTTGAAATGACACTAGAGTAATAAGAGCGTTATATTATGAACAAATCAGATATAGATAAAG---AGCATTTGTTTTC--AAAACTAAGAAGTGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     263533 1306 -    352859 AAT----------CATTTCTTACAG-TGAAGTGATGGAAATCA--CTCAATAGAAATCAGATATCCCTCATTAGTCCTAGTGGTGCTGCTGCCAGTCTTTAAACA---ACTTCCTCCCAAAGATTTTCTTCAGAGCCATCATCACTTCTTTGTTCCTAAGGGTGTAGATCAATGGGTTCAGGACAGGGGTGATGGTGCTATATATGATGGCCATTATCCAGTCCTGAATCATGAAGGTGGCTGAAGCAGGACGAATATATGTGAGGCCCACAGGTCCATAGAAAAGACATACCACCATAAAATGGGAGGCACAAGTGGACAGAGCCTTATGGAGTATTCTGCAGGACCTGTTCTTAAACAGAAGGAAGCCAATTATATAGAAGTAGGAGAGAAGAGTCAGAAAGAACCCTCCCATGGATATGCTGCCTGTGACAATGGAAAGAAGCCATTGATTGAGTAGTGTGTTACTACAGGCCAGTTCTAAGAGCGGCTTGACATCGCAGAAGAAGTGATTGAGTTTCTGAGAGCCACAAAAACTCAGGTGTGCAGTCATGACAGAATGCATCAGAGCATAAAAGAAGCTGATGAGCCATGCCCCAGACGCCAACAGAATACACACCTGGGGGTTCATGATGACAGTGTAGTGGAGAGGATTGCAGATAGCAACAAAACGGTCAAAGGCCATGATAGCCAGTAAAATGGCCTCTGTACTTCCCAGAAAGTGGAAGAAGTGTAGCTGGGTGATACAGCCTAGAAAAGATATAGCCCTGCGAGTGGAGACGAGGTTTACGAGCAGCTTGGGTAGTGTCACTGAAGAATAGCAAATATCCAGACAAGAAAGGTTTCCCAGAAAAAAATACATGGGGGAATGGAGTTGTGGTTCCAAAACAACCATCACCAATATAGATCCATTTCCAATCAAGTTTATCAGGTAAATGATTAAGAAAATCCCAAAGAAGAGAGGCTGCAGCTCCTGAGCACCAGTCAGGCCAAGTAGAAGAAACTCATTCATTGTAGTGACATTCTCCATTGCT---CTGGGA-AGCAAATTTAACAATAACA--GAATTAATTTTTCTGAAGTTTTAATTTTATACTGAGAGGATTAAATAAAGCAAGTTTACTATTTGGAGGAACCTAGGGGTGAGCAACAGTGTGAAGAATAGTTATGAACAGTAAAACAAAATTTATGTACAACAAAATTGAGGAAG---ACTAATATACCT--GATAAATTCTGAGCTGTTGAAATGGCACTAGAGTAATAAGAGCATTATATTATGAACAAATCAGATATAGATAAAG---AGCATTTGTTTTC--AAAACTAAGGAGTGTA
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     393133 1319 +    730504 AAT----------CATTTATTACAG-TGAAGTGACAGAAGTCATTCATAATGGAAATCAGACATGTCTCACTTGTGCTAGTGGTGCTGCTGGAAGTCTTTAA--A---ACTTCCTCCCAAACATTTTCTTCAGAGTCAACAACACTTCTTTGTTCCTAAGGGTGTATATCAGTGGATTCAGGACTGGGGTGACAGCACTATACATGATGGCCACCATCCGGTCTGGAATCGCGGAGGTGGCTGAGGCAGGACGAGTGTATGTGAAGCCCACAGGTCCATAGAAAAGACAGACCACCATAAAGTGGGAGGCACAAGTGGACAGAGCCTTGTGGAGTGTTCTGCAGGACTTGTTCTTGAACAGTAGGAAACCAATAATATAACAGTAGGAGAGAAGAGTCAGGAAAAAAGCTCCCATGGATATGCTGCCTGTGACAACAGACAGAAGCCATTGATTGAGCAGCGTGTTATCACAGGCCAGTTGCAAGAGGGGCTTGACATCACAAAAGAAGTGATTGAGTTTCTGAGAGTGGCAAAAATTGAGGCGTGCAGTCGTAACAGAATGCATCAGAGCGTAAAGGAAGCTGGTAAGCCAGACCACAGCTGCCAACAGAATACACACCTGGGGGCGCATGACGACGGGATAGCGAAGTGGGTTACAGATGGCAACAAAACGGTCAAAGGCCATGACCGCCAGTAAAATGGCCTCCGTGCTTCCCAGGAAGTGGAAGAAGTGCAGTTGAGTGATGCAGCCTAGGAAAGATATGGCCCTGCGAGTGGAGACAAGGTTTACAAGGACCTTGGGCAGTGTCACCGAAGAATAGCAAATATCCAGACAAGAAAGGTTTCCCAGAAAAAAATACATAGGAGAGTGGAGTTTTGGTTCCAAAACAATCATTACTAATATAGCTCCATTTCCAATCAAGTTTATCAGGTAAATGATTAAGAAAATCACAAAGAAGAAAGGCTGCAGCTCTTGAACACTGGTCAGGCCAAGTAAAAGAAATTCATTCACTGTGGTGACATTCTCCATTACTAAATTTGGGTAGCAAATTCAACAAAAGCAATGAGTTCATTTCTCTGAAATTTTAATTTTACACTGTGGAGATTAAATAAAGCAAGTTTACTATCTGCAGGAACCTAGGGGGCAGCTCTAGTGTGAAGAATATTTAGGAGTGGTAAAACTAAATTTTCTTACAACAAAACTAAGGAAGAGTAATAATATACCTGATATACATTCTAACCTGGCAAAATGGCATAAGACTAACAAGAGCAGCATATTCTGAATAAATCAGAGATAGGTAAAA---GGTATTTTTTTTAAAAAAAGTAGGAAGTATA
i proCoq1.NW_012152574v1   C 0 I 64
s otoGar3.GL873742          2060595 1310 -   2232465 ATTACAGTTTTTACATTTATTATA---AAAGTGATGGAAATCAGTCTTATTGGAAAGCAGGTATGTCTCATTAATTCTAGCAGTGCTACTGCCAGTCTTTAAATA---ACTTCTTCCCAAAGATTTTCTTCAAAGCCAACATCACTTCTTTGTTCCTAAGGGTATATATCAGTGGGTTTAGCACTGGGGTGACGGCACTATATATGATGGCCACCATTCTATCCTGAATCATGGAGGTGGCTGAGGCAGGACGAATGTATGTGAAGCCCACAGGTCCATAGAAAAGACATACTACCATAAAATGGGAGACGCAAGTGGACAGAGCCTTATGCAGTATTCTGCAGGACCAGTTCTTGGACAGAAGGAAGCCAATAATATAAAAGTAGGAGAGAAGAGTCAGAAGAAAAGCTCCCATGGATATGCTTCCTGTGACAACAGAAAGAAGCCATTGATTGAGTAGTGTGTTATTACAGGCCAGTTCCAAGAGGGGCTTGACATCACAGAAGAAGTGATTAAGTTTCTGAGAGTGGCAAAAATTCAGATGTGCAGTCATAACAGAATGCATCAGAGCATAAAAGAAGCTGGTGAGCCAGGCCACAGCTGCCAGTAGAATACACACATTGGGGTTCATGATGACATTGTAACGAAGTGGGTTGCAGATGGCAACAAAACGGTCAAAGGCCATGACAGCCAGTAAAATGGCCTCGGTACTTCCCAGAAAGTGGAAGAAGTATAGTTGAGTGATGCAGCCTAGGAAAGATATGGCCTTGTGAGTGGAGACAAGGTTTACAAGGACCTTGGGCAGTGTCACTGAAGAATAGCAAATATCCAGACAAGAAAGGTTTCCCAGAAAAAAGTACATAGGAGAGTGGAGTCTTGGTTCCAAAATAACCATTACTAATATAGCTCCATTTCCAATCAAGTTTATCAGGTAAATGGTTATGAAAATCACAAAGAAGAAAGGCTGCAGCTCTTGAACACTGGTCAGGCCAAGTAAAAGGAATTCATTCACTGTTGTGACATTCTCCATTACT---CTTGGG-GGCAAATTCAACAATAACAATGAGTT-ATTTATCTGAATTTTAACTTTTACACTGTGGAGATTAAATAAAGTGACTCTACCATTTGCAGGAACCTAGGGGGAAGCTATAGTGTAAAGGGTGTTTAGGAAGAGTAAAACTAAATTTACTTACAACAAAACTAAGGAAG---ACTAATATACT---GATAAATTCTGATCTGGTAAAATGGCATTAGATTAATAAGACCAGCATATTCTGAATAACCC--AGATAATTAAAA---GGCATTTTT------AAAAATATGAAGTATA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           530871 1306 +   1532071 AGC----------CATTTATTTCAGCTTAAGGTGTAGAAAT----CCTCATGGAAACTACCTACATCTCCTCAGTCCTAGCGGGGCTGCTGGCAGTCTTTAGACAAACACCTCCTCGTGAAGGTTCTCCTTAGAGCCAGCATCACTGCCTTATTCCTGAGGGTGTATATCAGGGGGTTTAGCACTGGGGTGACTGCACTGTAGATGATGGCCACCACACGGTCCTGAGTCATGGAGGAGGCTGAGGCAGGACGTATGTAGGTGTATCCCACAGGCCCATAGAAGAGGCCCACCACCACGAAGTGGGAGGCACACGTGGACAGAGCCTTATGGAGTGCACTGCAGGACCGGTTTTTAAGCAGAAGGAAGCCAATAATATAAACATAGGAGAGGAGTGTCAGAAGGAAAGCTCCCATGGCTATGCTGCCCGTGACAATGGAAACAAGCCATTGATTGAGCAGTGTGTCCCCACAGGCCAGTTCCAAGAGGGGCTTGACATCGCAGAAGAAGTGATTGAGTTTCTGAGAGCCACAAAAGTTCAGGTGGGCAGTCATGACTGAATGCATCAGAGCATAAAAGAAGCTGGTGAGCCAGGCCACAGCTGCCAGCAGAGCACACACCTGGGGGTTCATGATAACACTGTAGCGGAGTGGGTAGCAGATGGCCACAAAACGGTCAAAGCCCATGATGGCCAGCAAGATGGACTCTGTGCTTCCCAGGAAGTGGAAGAAGTGCAGCTGAGTGATGCAGCCAAGGAAAGATATGGCCTTGCGTGTGGAAAGGAGGTTTAAGAGCACCTTGGGCAGGGTCACTGAAGAATAGCAGATATCCAGGCAAGAAAGATTTCCCAGAAAAAAGTACATAGGGTAGTGGAGCTTTGGCTCCAAGATAACAATCACTAATATAGCTCCATTTCCAACCAAGTTTACCAGGTAAATGATGGAGAAAATCACAAAGAAGAGAGGCTTCAATTCCTTAACACTGGTCAGGCCAAGTAAAACAAACTCATTCATTGCAGTGACGTTCTCCATTGCT--TTTGGGG-ATCAAATAAAGCTGTAATGATGCATTAAGTTTTCTGAATTTTTAATTTTACACTGTGGGGATTAAGTGAAGGCAACTCACTATTTGAAGGAACCCAGTGGTGAGCTACAATGTGAAGAAGGATTAATAATGGTAGAGATAAATTTGCTTACAACAAAACTAAGGAAG---ACTGACA-ACCT--GGTAAATTTTGAACAAGTAAAATGATAGCA-ACTAATAGCATCATCGAATTGTAAATATATCAGAGATGCATAAAG---GGCACTTTTT-----GAAAAAAGGAGATGTA
i dasNov3.JH570741         I 32941 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=314441.000000
s hg38.chr6_GL000254v2_alt   641092 75 +   4827813 AGATTTGATGGACATAATCATAACCTCATGTATGGCATTAGAATTATGTATTACAAAAATTTTAAACATACAAAC
s panTro5.chr6             29613110 75 + 175400573 AGATTTGATGGACATAATCATAACCTCATGTATGGCATTAGAATTATGTATTACAAAAATTTTAAACATACAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29851335 75 + 173848474 AGATTTGATGGACATAATCATAACCTCATGTATGGCATTAGAATTATGTATTACAAAAATTTTAAACATACAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5654244 75 +   6154872 AGATTTGATGGACATAATCATAACCTCATGTATGGCATTAGAATTATGTATTACAAAAATTTTAAACATACAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29878787 63 + 172585720 AGATTTGATGGACATAATCATA------------GCATTAGAATTATGTACTACAAAAATTTTAAACATACAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29541763 63 - 170955103 AGATTTGATGGACATAATCATA------------GCATTAGAATTATGTACTACAAAAATTTTAAACATACAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2528191 63 -   2996164 AGATTTGATGGACATAATCATA------------GCATTAGAATTATGTACTACAAAAATTTTAAACATACAAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     280591 75 +    766320 AGATTTGATGGACATAATCATAATCTCATGTGTGGCATTAGAATTATGTACTACAAAAATTTTAAACATACAAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28782809 75 -  71996105 AGATTTGATGGACATAATCATAACCTCATGTGTGGCATTAGAATTATGTACTACAAAAATTTTAAACATACAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     264839 75 -    352859 AGATTTGATGGACATAATCATAACCCCATGTGTGGCATTAGAATTATGTACTACAAAAATTTTAAACATACAAAC
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2061905 64 -   2232465 ---------GAATATGGCCATAACCTCATGTATGGCAATAGAATTAAGGGTTACGCAAATTTAAAATGTACAA--
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           532177 66 +   1532071 ---------GAAAATGAGTATAACCTTATATGTGGCATTAGAATTAGGGGTAAGACAAACTTAAAACATGCCAAT
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     394452 64 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=305751.000000
s hg38.chr6_GL000254v2_alt   641167 55 +   4827813 AGGGAATAGTTTTTCAACTTATGATTCTAGGTTCTGGCAAAAATTCAGATGTAGC
s panTro5.chr6             29613185 55 + 175400573 AGGGAATAGTTTTTCAACTTATGATTCTAGGTTCTGGCAAAAATTCAGATGTAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29851410 55 + 173848474 AGGGAATAGTTTTTCAACTTATGATTCTAGGTTCTGGCAAAAATTCAGATGTAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5654319 54 +   6154872 AGGGAATAGTTTTTCAACTTATGATTCTAGGTTCTGG-AAAAATTCAGATGTAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29878850 53 + 172585720 --GGAATAGTTTTTCAACTTATGATTCCAGGTTCTGGCAAAAACTCAGATGTAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29541826 53 - 170955103 --GGAATAGTTTTTCAACTTATGATTCCAGGTTCTGGCAAAAACTCAGATGTAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2528254 53 -   2996164 --GGAATAGTTTTTCAACTTATGATTCCAGGTTCTGGCAAAAACTCAGATTTAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     280666 53 +    766320 --GGAATAGTTTTTCAACTTATGATTCCAGGTTCTGGCAAAAACTCAGATGTAGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28782884 53 -  71996105 --GGAATAGTTTTTCAACTTATGATTCCAGGTTCTGGCAAAAACTCAGATGTAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     264914 53 -    352859 --GGAATAGTTTTTCAACTTATGATTCCAGGTTCTGGCAAAAACTCAGATGTAGC
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     394516 55 +    730504 agggaatagtttttcaacttgtgattCCACGTTCTGGCGATCATACAGATGCAGC
i proCoq1.NW_012152574v1   I 64 I 17
s otoGar3.GL873742          2061969 55 -   2232465 AGGGAATAGTTTTTCAACTTGGGATTCCATATTGTGGCAGTAACACAGATGTAAC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           532243 51 +   1532071 --GGGATAGTTGTTCATCTTGTGATGCTAG--TCTGGCATGAACATGGATTTCTC
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=82342.000000
s hg38.chr6_GL000254v2_alt   641222 21 +   4827813 TCAGTGGGGATTTCATCACTT
s panTro5.chr6             29613240 21 + 175400573 TCAGTGGGGATTTCATCACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29851465 21 + 173848474 TCAGTGGGGATTTCATCACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5654373 21 +   6154872 TCAGTGGGGATTTCATCACTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29878903 21 + 172585720 TTAGTGGCGATTTCATCACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29541879 21 - 170955103 TTAGTGGCGATTTCATCACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2528307 21 -   2996164 TTAGTGGCGATTTCATCACTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     280719 21 +    766320 TTAGTGGGGATTTCATCACTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28782937 21 -  71996105 TTAGTGGGGATTTCATCACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     264967 21 -    352859 TTAGTGGGGATTTCATCACTT
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2062024 13 -   2232465 CCAGTAGGGATTT--------
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           532294 13 +   1532071 --------CACTTGGCCACAT
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     394571 17 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=1269547.000000
s hg38.chr6_GL000254v2_alt   641243 250 +   4827813 CTTCTAAG-ATACATAAAAGCCACAAGAGAGTAACACATGTCTTCTGACAACCCAAACTTTCAGTGAAAGTAAGAAACATAAACACCCACAAAC--CAAATGTTGTATGAGTA-----GAGGAGAAAAAAACAGCAAAATTAGCATCATTAGTCACAAGACTGTGTCATAGCAATGAGGCAGTGGATGTAGTTGGGAAAAACTTGAAATAGTTAGAGGTCCCATTAGTAGAAGAACTTCGAAAACACCCCCAATTTTT
s panTro5.chr6             29613261 250 + 175400573 CTTCTAAG-ATACATAAAAGCCACAAGAGAGTAACACATCTCTTCTGACAACCCAAACTTTCAGTGAAAGTAAGAAACATAAACACCCACAAAC--CAAATGTTGCATGAGTA-----GAGGAGAAAAAAACAGCAAAATTGGCATCATTAGTCACAAGACTGTGTCATAGCAATGAGGCAGTGGATGTAGTTGGGAAAAACTTGAAATAGTTAGAGGTCCCATTAGTAGAAGAACTTCGAAAACACCCCCAATTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29851486 250 + 173848474 CTTCTAAG-ATACATAAAAGCCACAAGAGAGTAACACATCTCTTCTGACAACCCAAACTTTCAGTGAAAGTAAGAAACATAAACACCCACAAAC--CAAATGTTGCATGAGTA-----GAGGAGAAAAAAACAGCAAAATTGGCATCATTAGTCACAAGACTGTGTCATAGCAATGAGGCAGTGGATGTAGTTGGGAAAAACTTGAAATAGTTAGAGGTCCCATTAGTAGAAGAACTTCGAAAACACCCCCAATTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5654394 246 +   6154872 CTTCTAAG-ATACATAAAAGCCACAAGAGAGTAACACATCTCTTCTGACAACCCAAACTTTCAGTGA----AAGAAACATAAACACCCACAAAC--CAAATGTTGTATGAGTA-----GAGGAGAAAAAAACAGCAAAATTAGCATCATTAGTCACAAGACTGTGTCATAGCAATGAGGCAGTGGATGTAGTTGGGAAAAACTTGAAATAGTTAGAGGTCCCATTAGTAGAAGAACTTCGAAAACACCCCCAGTTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29878924 250 + 172585720 CTTCTAAG-ATACATAAAAGCCACAAGAGAGTAACATATCTCTTCTGACAACCCAAACTTTCAGTGAAAGTAAGAGATACAAACACCCACAAAC--CAAATGTTGTATAAGTA-----GAGGAGAAAAAAGCAGCATGATTGGTATCGTTAGTCATAAGACTGCAGCATAGCAATGAGGTTGTGGATATACTTGGGAAAAAACTGAAATAGTTAGAGGTCCCATTAGTAGAAGAACTTCAAAAACACCCCCAATTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29541900 250 - 170955103 CTTCTAAG-ATACATAAAAGCCACAAGAGAGTAACATATCTCTTCTAACAACCCAAACTTTCAGTGAAAGTAAGAGACACAAACACCCACAAAC--CAAATGTTGTATAAGTA-----GAGGAGAAAAAAGCAGCATGATTGGTATCGTTAGTCATAAGACTGCAGCATAGCAATGAGGTTGTGGATATACTTGGGAAAAAACTGAAATAGTTACAGGTCCCATTAGTAGAAGAACTTCAAAAACACCCCCAATTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2528328 250 -   2996164 CTTCTAAG-ATACATAAAAGCCACAAGAGAGTAACATATCTCTTCTAACAACCCAAACTTTCAGTGAAAGTAAGAGACACAAACACCCACAAAC--CAAATGTTGTATAAGTA-----GAGGAGAAAAAAGCAGCATGATTGGTATCGTTAGTCATAAGACTGCAGCATAGCAATGAGGTTGTGGATATAGTTGGTAAAAAACTGAAATAGTTAGAGGTCCCATTAGTAGAAGAACTTCAAAAACACCCCCAATTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     280740 250 +    766320 CTTCTAAG-ATACTTAAAAGCCACAAGAGAGTAACATATCTCTTCTGACAACCCAAACTTTCAGTGAAAGTAAGAGACACAAACACCCACAAAC--CAAATGTTGTATAAGTA-----GAGGAGAAAAAAGCAGCATGATTAGTATCATTAGTCATAAGACTGCGGCATAGCAATGAGGTTGTGGATATAGTTGGGAAAAAACTGAAATAGTTAGAGGTCCCATTAGTAGAAGAACTTCAGAAACACCCCCAATTTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28782958 250 -  71996105 CTTCTAAG-ATACATAAAAGCCACAAGAGAGTAGCATATCTCTTCTGACAACCCAAACTTTCAGTGAAAGTAAGAGACACAAACACCCACAAAC--CAAATGTTGTATAAGTA-----GAGGAGAAAAAAGCAGCATGATTAGTATCATTAGTCATAAGACTGCGGCATAGCAATGAGGTTGTGGATATAGTTGGGAAAAAACTGAAATAGTTAGAGGTCCCATTAGTAGAAGAACTTCAAAAACACCCCCAATTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     264988 250 -    352859 CTTCTAAG-ATACATAAAAGCCACAAGAGAGTAACATATCTCTTCTGACAACCCAAACTTTCAGTGAAAGTAAGAGACACAAACACCCACAAAC--CAAATGTTGTATAAGTA-----GAGGAGAAAAAAGCAGCATGATTAGTATCATTAGTCATAAGACTGCGGCATAGCAATGAGGTTGTGGATATAGTTGGGAAAAAACTGAAATAGTTAGAGGTCCCATTAGTAGAAGAACTGCAAAAACACCCCCAATTTTT
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     394588 244 +    730504 CTTCTAAA-ATCCATAAAAGCCACAGGAGATTAACACATCCCTCCTGGTAA-CCAAACCTGCAGTGAAACTAA--GACATAAAAACCCGCAAACTTCAAATATTGTAAAAGTA------GAGGGAAAAAAACAGTATAATTAGCATCATTAGTCACAAG-CTATAGCATGGCAGTGAGGCTGTGTGTGTAATTGAGTAAAACTTGAAATAATGAGAGGTCC---TAACAGAAGAACTTTGAAAACATCCCAAATTTTT
i proCoq1.NW_012152574v1   I 17 I 400
s otoGar3.GL873742          2062037 241 -   2232465 CTCCTAAG-ATCCATAAAAGCCAAAGGAGGGTAACACATCCTTTCTGGCAA-CCAAAACTTCAGGGAGGCTAAGTGACATAAAACTCCACAAACTTCAAATATTATATAAGTAAGGGGGGGGGGGGGAACACAGTAGAATTAGCACAATTAGCCA-----------CATGACAATAAGGCTGTGGGTAAAATTGAGAAAAACAT-AAATAATGAGAAGTCC---TGGCAGAAAAACTTTGAAAACATTCCAAAGTTTT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           532307 236 +   1532071 CTTCTAGGTATAC---AAAGTAGCAGGCAATTCACAAATATCCCCT-ACAACCTAAA---------AAACTAAAAGACATGAATTGGAACAAACTTCATACACTGTTTAAGTA-----GGAGAAAAAGCACC--CAAAATTGATATGG--AGTCCCTAGATTGCCGCATTGTGGTGGGGCAGTGGTCGTAGTTGCATACAATTCAAAATGGAGAAGGTTTCCAAGGGTAGAAGAACTTTGAAAACACCAAAAATCTTT
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=6876.000000
s hg38.chr6_GL000254v2_alt   641493 2 +   4827813 CA
s panTro5.chr6             29613511 2 + 175400573 CA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29851736 2 + 173848474 CA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5654640 2 +   6154872 CA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29879174 2 + 172585720 CA
i rheMac8.chr4             C 0 I 354
s macFas5.chr4             29542150 2 - 170955103 CA
i macFas5.chr4             C 0 I 354
s macNem1.NW_012011356v1    2528578 2 -   2996164 CA
i macNem1.NW_012011356v1   C 0 I 345
s otoGar3.GL873742          2062278 2 -   2232465 CA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           532543 2 +   1532071 CA
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     394832 400 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     265238 0 -    352859 C
e chlSab2.chr17            28783208 0 -  71996105 C
e cerAty1.NW_012002711v1     280990 0 +    766320 C

a score=183716.000000
s hg38.chr6_GL000254v2_alt   641495 261 +   4827813 ATCCA-AAAGGGGAGTACCTCCCAGGGAGTGAGAATTTCTGTGGGGCAGGGGATAGAAA----AAGGCACAGTCTAAGCACTGAAGGTGATGGAGAGAAGAGGTATAGTAAATATATGAAGAACAAAGG-AAGC-TTGTCATTTGTAAGTAATtaataataataataataataacaataataataatCACCACC-----TTATCAACAGAAGAGGGAGCCCTTGCACTGAGGAATTGGAAAGGCTA-ACTAGGATACTCCTCCCACCCATGCCT----
s panTro5.chr6             29613513 255 + 175400573 GTCCA-AAAGGGGAGTACCTCCCAGGGAGTGAGAATTTCTGTGGGGCAGGGGATAGAAA----AAGGCACAGTCTAAGCACTGAAGGTGATGGAGAGAAGAGGTATAGTAAATATATGAAGAACAAAGG-AAGC-TTGTCATTTGtaagtaat------taataataataataacaataatgataatCACCACC-----TTATCAACAGAAAAGGGAGCCCTTGCACTGAGGAATTGGAAAGGCTA-ACTAGGATACTCCTCTCACCCATGCCT----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29851738 255 + 173848474 GTCCA-AAAGGGGAGTACCTCCCAGGGAGTGAGAATTTCTGTGGGGCAGGGGATAGAAA----AAGGCACAGTCTAAGCACTGAAGGTGATGGAGAGAAGAGGTATAGTAAATATATGAAGAACAAAGG-AAGC-TTGTCATTTGtaagtaat------taataataataataacaataatgataatCACCACC-----TTATCAACAGAAAAGGGAGCCCTTGCACTGAGGAATTGGAAAGGCTA-ACTAGGATACTCCTCTCACCCACGCCT----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5654642 255 +   6154872 GTCCA-AAAGGGGAGTACCTCCCAGGGAGTGAGAATTTCTGTGGGGCAGGGGATAGAAA----AAGGCACAGTCTAAGCACTGAAGGTGATGGAGAGAAGAGGTATAGTAAATACATGAAGAACAAAGG-AAGC-TTGTCATTTGtaagtaat------taataataataataacaataataataatCACCACC-----TTATCGACAGAAGAGGGAGCCCTTGCACTGAGGAATTGGAAAGGCTA-ACTAGGATACTCCTCCCACCCACGCCT----
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742          2062280 241 -   2232465 AACTG-AAAGGAGACTCACCTATAATGAGTGGAGATTTCTTAGGGGTAGGGGATAAAAC----AAGGCACATACTAAGCACTAAGGAAGATT--TTTAACAGGCATAGTAAATGTAAGAAGAATGAAGACCACC-TTGTCATTTG-----aat-----------atataaata--aataa--ataatCACCACCACTGTATATTGGTGGAAAAGGGAACACTTGA---GTGGAACTGGAGGGGCTA-CCTGGTGCA-TTCTCCTACCTACCCAG----
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           532545 239 +   1532071 GCCCAGGAAGGAGAGTGCCTCATAGTGAACAAAAGTTCTCTAGGG--AGGAGAAAAAAAGGACAAAGCACTGCACAGGGACTCAGAAAGACAGAGCAAAAAACTATGGCAAATGTAAG-AGAACAAAGA-AAGCACTGGTATTT-------AT----------------------AAAAATATTAATCATCACA-----ACATCAAGGGAAGAAGGAGCCCTTGATGTGAGGAATTGGTTAAGCTACACTGACACT-TCCCCCCACATGCACACACAC
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     394832 400 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     265238   0 -    352859 C
e chlSab2.chr17            28783208   0 -  71996105 C
e cerAty1.NW_012002711v1     280990   0 +    766320 C
e macNem1.NW_012011356v1    2528580 345 -   2996164 I
e macFas5.chr4             29542152 354 - 170955103 I
e rheMac8.chr4             29879176 354 + 172585720 I

a score=43777.000000
s hg38.chr6_GL000254v2_alt   641756 30 +   4827813 ACTAAGATTCTTCTGCTAATAATTGGTCCA
s panTro5.chr6             29613768 30 + 175400573 ACTAAGATTCTTCTGCTAATAATTGGTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29851993 30 + 173848474 ACTAAGATTCTTCTGCTAATAATTGGTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5654897 30 +   6154872 ACTAAGATTCTTCTGCTAATAATTGGTCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     395232 30 +    730504 ACTAAGATTCCCCTGCTAATAATTGGTCCA
i proCoq1.NW_012152574v1   I 400 C 0
s otoGar3.GL873742          2062521 28 -   2232465 ACTC--ATTCCCCTACTAATAATTGGttca
i otoGar3.GL873742         C 0 I 1305
s dasNov3.JH570741           532784 30 +   1532071 ATTCATATTCCTCTGCTAATAATTCTTCTA
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     265238  0 -    352859 C
e chlSab2.chr17            28783208  0 -  71996105 C
e cerAty1.NW_012002711v1     280990  0 +    766320 C
e macNem1.NW_012011356v1    2528580 345 -   2996164 I
e macFas5.chr4             29542152 354 - 170955103 I
e rheMac8.chr4             29879176 354 + 172585720 I

a score=250299.000000
s hg38.chr6_GL000254v2_alt   641786 244 +   4827813 CAATATCATAAGTTCTCCAGTGTAAGTTCTCCATAAAATAACTCTaaaaatagacagaaat---aaagacatagttaaaaccacaatcacaatgagaagatttaacaagtttctctctatacctgacagaagaatcagccaaaaagtcagtaaggatata-aacatctgaacaacataatttacaaatttga-----------------ttaacatataaagaacactgaacccaaccaaaacataattcacattattttcaagt
s panTro5.chr6             29613798 244 + 175400573 CAATATCATAAGTTCTCCAGTGTAAGTTCTCCATAAAATAACTCTaaaaattgacagaaat---aaagacatagttaaaaccacaatcacaatgagaagatttaacaagtttctctctatacctgacagaagaatcagccaaaaagtcagtaaggatata-aacatctgaacaacataatttacaaatttga-----------------ttaacatataaggaacactgaacccaaccaaaaaataattcacattattttcaagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29852023 244 + 173848474 CAATATCATAAGTTCTCCAGTGTAAGTTCTCCATAAAATAACTCTaaaaattgacagaaat---aaagacatagttaaaaccacaatcacaatgagaagatttaacaagtttctctctatacctgacagaagaatcagccaaaaagtcagtaaggatata-aacatctgaacaacataatttacaaatttga-----------------ttaacatataaggaacactgaacccaaccaaaacataattcacattattttcaagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5654927 244 +   6154872 CAATATCATAAGTTCTCCAGTGTAAGTTCTCCATAAAATAACTCTaaaaattgacagaaat---aaagacatagttaaaaccacaatcacaatgagaagatttaacaagtttctctctatacttgacagaagaatcagccaaaaagtcagtaaggatata-aacatctgaacaacataatttacaaatttga-----------------ttaacatataaagaacactgaacccaaccgaaaaataattcacattattttcaagt
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     395262 243 +    730504 GAATATCACAG----TCCAGtgtaagctcccaataaaatagttttaaaagttggcagaagtggagaagatacagttaaatccataatcataatgagaagttttggcgtatttctctctatacctgatagaagaatcagccaaaaagccaataaagatata-aatacgtgaataacataatttacaaatttga-----------------ttaacatatatagaacactgaacccagcaagagaataattcacataattttcaagt
i proCoq1.NW_012152574v1   C 0 I 4558
s dasNov3.JH570741           532814 258 +   1532071 GACTATCATAG----TCCAAtgtaaacctccaataaaatagcttcaaaagctgaccaaaataaagaagaaatagtcaaacccgcaattttaatgagaaattttaacatatctctctcaatagctgatagaagaatcagccaaaaagtcagtcaatatttagaaaatctgaacagcacaatttacaaatttgaaatttgtatggttttattttacatgtataggacagggatctcaacaagaagagaatttacactattttca---
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2062549 1305 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     265238   0 -    352859 C
e chlSab2.chr17            28783208   0 -  71996105 C
e cerAty1.NW_012002711v1     280990   0 +    766320 C
e macNem1.NW_012011356v1    2528580 345 -   2996164 I
e macFas5.chr4             29542152 354 - 170955103 I
e rheMac8.chr4             29879176 354 + 172585720 I

a score=141960.000000
s hg38.chr6_GL000254v2_alt   642030 208 +   4827813 atatcttgtacatatttacaaaatcaagcatgagttgagtattaccaaaaggcttcaaaaggtttcaaaaggttgagctattcaaagaatgtcccttgaccacactggaattaaaaa-acaataagaaaaatgcatctagaaactcaccaattgcttcatattatgta--atacacacaaataattcataaagaaaa----aattcaaataaaat
s panTro5.chr6             29614042 208 + 175400573 atatcttatacatatttacaaaatcaagcatgagttgagtattaccaaaaggcttcaaaaggtttcaaaaggttgagctattcaaagaatgtcccttgaccacactggaattaaaaa-acaataagaaaaatgcatctagaaactcatcaattgcttcatattatgta--atacacacaaataattcataaataaaa----aattcgaataaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29852267 208 + 173848474 atatcttgtacatatttacaaaatcaagcatgagttgagtattaccaaaaggcttcaaaaggtttcaaaaggttgagctattcaaagaatgtcccttgaccacactggaattaaaaa-acaataagaaaaatgcatctagaaactcaccaattgcttcatattatgta--atacacacaaataattcataaataaaa----aattcgaataaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5655171 209 +   6154872 atatcttgtacatatttacaaaatcaagcatgagttgagtattaccaaaaggcttcaaaaggtttcaaaaggttgagctattcaaagaatgtcccttgaccacactggaattaaaaagacaataagaaaaatgcatctagaaactcaccaattgcttcatattatgta--atacacacaaataattcatacattaaa----aattcaaataaaat
i gorGor5.CYUI01015250v1   C 0 C 0
s dasNov3.JH570741           533072 198 +   1532071 -------ttgcacatttaaaaaatcaagcatatgct-----cttaaaaaaagcttccaaaatcttcaaaagattgaaccattcaaagaattttctttgaccagagtggaattaaaaa-acaataacaaaa----atctaaaaacctacaaaatgtttgataataaggattatgtgtctaaatagttcatgggtaaaataagaaatcaAAGAGAAT
i dasNov3.JH570741         C 0 I 3091
e proCoq1.NW_012152574v1     395505 4558 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2062549 1305 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     265238   0 -    352859 C
e chlSab2.chr17            28783208   0 -  71996105 C
e cerAty1.NW_012002711v1     280990   0 +    766320 C
e macNem1.NW_012011356v1    2528580 345 -   2996164 I
e macFas5.chr4             29542152 354 - 170955103 I
e rheMac8.chr4             29879176 354 + 172585720 I

a score=3318598.000000
s hg38.chr6_GL000254v2_alt   642238 6052 +   4827813 [encoded data, 6074 characters]
s panTro5.chr6             29614250 6060 + 175400573 [encoded data, 6074 characters]
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29852475 6055 + 173848474 [encoded data, 6074 characters]
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5655380 6061 +   6154872 [encoded data, 6074 characters]
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570741           533270 3091 +   1532071 I
e proCoq1.NW_012152574v1     395505 4558 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2062549 1305 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     265238    0 -    352859 C
e chlSab2.chr17            28783208    0 -  71996105 C
e cerAty1.NW_012002711v1     280990    0 +    766320 C
e macNem1.NW_012011356v1    2528580  345 -   2996164 I
e macFas5.chr4             29542152  354 - 170955103 I
e rheMac8.chr4             29879176  354 + 172585720 I

a score=73347.000000
s hg38.chr6_GL000254v2_alt   648290 38 +   4827813 catatctgagagaactctcaaaacttaatagtattctt
s panTro5.chr6             29620310 38 + 175400573 catatctgacagaactctcaaaacttaatagtattctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29858530 38 + 173848474 catatctgacagaactctcaaaacttaatagtattctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5661441 38 +   6154872 catatctgacagaactctcaaaacttaatagtattctt
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     280990 38 +    766320 CATATCTGACagaactctcaaaacttaatagtattctt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28783208 38 -  71996105 CATATCTGACagaactctcaaaacttaatagtattctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     265238 38 -    352859 CATATCTGACagaactctcaaaacttaatagtattctt
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570741           533270 3091 +   1532071 I
e proCoq1.NW_012152574v1     395505 4558 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2062549 1305 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e macNem1.NW_012011356v1    2528580 345 -   2996164 I
e macFas5.chr4             29542152 354 - 170955103 I
e rheMac8.chr4             29879176 354 + 172585720 I

a score=10902135.000000
s hg38.chr6_GL000254v2_alt   648328 2863 +   4827813 aaaagtccaaaaacatgggcaaaaactaggaaaagacatacaaacataaacagaaaatga-tatataaatggcaaattaacacaggaaaaggtgttcaaaatcattttcatcagcacaatgcaaattaaaaccagtaaaatgctac-aacacatctatcaaaatagataaaataaaaatagtgacaacaccaaatgctagggaggatacagaaagactggatcatgaatataaaactggtcaggatataaaatggtacaactgcgctggagagagtatagtcgtttctt-acaaaattaaacatacacttactatatgacccaacaattgcacgctttggaatttatgtcagtacaataaaaacatgttcacacaaaaacttgtatgtgaatgttcatagac----tatttgtaatagccaaaaactggaaataccccaaatgtcctgcaatggagaaatgcttacac-aaactgtggtat-atccataccatggaatgctacttagcaataaaaagaaaacaacaatttggtaaactctccaggaaattacgcttaattttttaaaaagtgaaatcc-aaaaaattatatactgtatgattccatttatataacatttttgaaataata-ttttagaaatggggaaaagattggtagttacagttggagaatgaagtt-ggagaaggagcagaagagaggtgtgtgtggttatgaaaggataccaagaaagatccttgtggtggaggaactattctgtattttgactatgatggcagatacaggaacatgagataaaactgtgtagaattaaactcagatacacaaaacaaatgaatacaaataaaactggggctatcattaagattcatgggttgtatcagcatcaatatcctgattgtgaaactgtgctgcaatttgttaccat-ggggaggaaccatgtaaagggaaaacagcatctttgtgta-ttttttcttacaactgcatatTGTAATCATACATAAGATTTTAA-TT-AAATGGCAAATCATATTTGTACAAAGATCAAAATACTTAATAAATTATATGTGTTTGAGAATGGCTAAATAGGAATTTC-TGATGAT---AATTTGTACTAGTTATATGCTGGGTAATTTTTTCAATAGCTCTCAAAGTTGAAAATTGTGAATCACATACTTTGTGTTATaatttacctgtagatattattcaatgtgtggaaatcattattatataccataatatttatttgagtattttaaaagcaaaaattagacagaaccctaagagccaaagtaggggacgaggtgaattatt-acacctatgagagagaataatatgcagctttaaaatatatatatgtac--atatatataCACACACA----AAGAAAATAGCCAGGTGGATAGATACGGAAAGGTGCACAAATCatatatatgcaaatttttacatatgtacctatatacatataaattatatatgttatgaatgccaaggtgacttgttaaatgatataatcaagatgcagcacaatgtgagtagtatgctaaaacttctgtttaacatttttttctatacgcacatgtacttctgaatggacataaaagaaactgataactgttgtagtctctaggaagagaaactggctgtcaaggaaacaaaggcagaagaaatactctttttagtat-----------attttgaattttgtaccatgttcatatattatgtactcaaaaaacgaaATTATTTTCTTTAAAAATAAGCACGGCAATACTATGCACAAATATATAGTTGTGAAAAAGAGCAGTGAACTGAGCATCTAAAATATTTAGGCCCAGTAATATTATGTATAAATGGCAGTGTATATGACAAGTACAGTCTGTTTTATAGATGGCAAAGTGGAGACTGTGACTTACTTTGGACTAGAAAGTCGTTACTTCGGCATCTGTTTTACAGATTATACTTGTCATACGCACTTCTCTGTTTTATCAAATCAAAGGCACTATTCCAtttattct---tttttttttttcaagactgtcttgctctgtcacctaggctggagtacagtcatgcaatcttggctcactgcaacctctgtctcctgggttcaagcaattctcaggcttcaacctcccagatagctgggattacaggtacgcatcaccacactgtgctaatttttgta-ttttagtagagacaaggttttaccacgttggccagcctggtttctagtgcctgatctcaagtgatct-----gcccacctcggcctcccaaagtgttaggatcacaggtgtaagccaccatgcctggccACCATTTATTCTTATAGGTAGAATTTTGCATGTCTGTCTACTCATTGGAATATCAGATTATTAGAGGT--GAAAAAAACTGAAAGTATCTTATTCTTCATATTCTTACAGTTCCTATACCATGTAGAAAAACAGAACAATGGTGTAGAAAAATAATCTATAGAATAAAATTGGTCACTTATTCTGGCTATCCATGTACTCTTACAAATGACTG-------------TTATTCTAATATAATAATTAGTAAATATGAAATAAATTCCAAGAAAAAATGAACATAATATTGAAAGAAAGACAAATAGTAATATCTTTAAGTGACTTTGAACTAGTGACTTTGATATCATAACTACATGTCTTCCAAGTATAAAATTTATTCTGGCTATATAGCTTCTAAGAGGGAGATCTCTTGTCTAACCCCCACTCTGAGTTCTAGACTTACCTAATTTCATATTTGACTCTCCacttgaattcacacaaaagcttgtattcatatattcatagaatctttattcataacaacccaaaactggaagtagcccaaatgtcctttaatggagggatggttgaaTTCTTTACTGAATTACAaaaatcaacacgtc
s panTro5.chr6             29620348 2869 + 175400573 aaaagtccaaaaacatgggcaaaaactaggaaaagacatataaacataaacagaaaatga-tatataaatggcaaattaacacaggaaaatgtgttcaaaatcattttcatcagcacaatgcaaattaaaaccagtaaaatgctac-aacacatctatcaaaatagataaaataaaaatagtgacaacaccaaatgctagggaggttacagaaagactggatcacgaatataaaactggtcaggatataaaatggtacaactgctctggagagactatagttgcttctt-acaaaattaaacatacacttactatatgacccaataattgcactctttggaatttatgtcagtacaataaaaacatgtgcacacaaaaacttgtatgtgaatgttcatagactctttatttataatagccaaaaactggaaataccccaaatgtcctgcaatggagaaatgcttacac-aaactgtggtat-atccatacaatggaatgctacttagcaataaaaagaaaacaacaatttggtaatctctccaggaaattatgcttaattttttaaaaagtgaattcc-aaaaaattatatactgtatgattccatttatataacatttttgaaataata-ttttagaaatggggaaaagattggtagttacagttggagaatgaagtt-ggagaaggagcagaagagaggtgcgtgtggttatgaaaggataccaagaaagatccttgtggtggaggaactattctgtattttgactatgatggcagatacaggaacatgagataaaactgtgtagaattaaactcagatacacaaaacaaatgaatacaaataaaactggggctatcattcagattcatgggttgtatcagcatcaatatcctgattgtgaaactgtgctgcaatttgttaccat-ggggaggaaccatgtaaagggaaaacagcatctttgtgta-ttttttcttacaactgcatatTGTAATCATACATAAGATTTTAA-TT-AAGTGGCAAATCATATTTGTACAAAGATCAAAATACTTAATAAATTATATGTGTTTGAGAATGGCTAAATAGGAATTTC-TGATGAT---AATTTGTACTAGTTATATGCTGGGTAATTTTTTCAATAGCTCTCAAAGTTGTAAATTGTGAATCACATACTTTGTATTATAATTTACCTGTAGATATTATTCAATGTGTGGAAATTATTATTATATACCATAATATTTATTTGAATATTTTAAAAGCAAAAATTAGACAGAACCCTAAGAGCCAAAGTAGGGGACGAGGTGAATTATT-ACACCTATGAGAGAGAATAATATGCAGCTTTAAAatatatatatgtac--atatatataCACACACA----AAGAAAATAGCCAGGTGGACAGATACAGAAAGGTGCACAAATCatatatatgcaaatttttacatatgtacctatatacatataaattatatatgttatgaatgccaaggtgacttgttaaatgatataatcaagatgcagtacaatgtgagtagtatgctaaaatttctgtttaacatttttttctatacgcacatgtacttctgaatggacataaaagaaactgataactgttgtagtctctaggaagagaaactggctgtcaaggaaacaaaggcagaagaaatactctttttcgtgt-----------attttgaattttgtaccatgttcatatattatgtactcaaaaaacaaaATTATTTTCTTTAAAAATAAGCATGGCAATACTATGCACAAATATATAGTTGTGAAAAAGAGCAGTGAACTGAGCATCTAAAATATTTAGGCCCAGTAATATTATGTATAAATGGCAGTGTATATGACAAGTACAGTCTGTTTTATAGATGGCAAAGTGGAGACTGTGACTTACTTTGGACTAGAAAGTCGTTACTTAGGCATCTGTTTTACAGATTATACTTGTCATACGCACTTCTCTGTTTTAGCAAATCAAAGGCACTATTCCAtttattct-tctttttttttttcaagactgtcttgctctgtcacctaggctggagtacagtcgtgcaatcttggctcactgcaacctccgtctcctgggttcaagcaattctcaggcttcaacctcccagatagctgggattacaggtacacatcaccacactgtgctaatttttgta-ttttagtagagacaaggttttaccacgttggccagcctggtttctagtgcctgatctcaagtgatct-----gcccacctcggcctcccaaagtgttaggatcacaggtgtaagccaccatgcctggccACCATTTATTCTTATAGGTAGAATTTTGCATGTCTGTCTACTCATTGGAATATCAGATTATTAGAGGT--GAAAAAAACTGAAAGTATCTTATTCTTCATATTCTTACAGTTCCTATACCATGTAGAAAAACAGAACAATGGTGTAGAAAAATAATCTATAGAATAAAATTGGTCGCTTATTCTGGCTATCCATGTACTCTTACAAATGACTG-------------TTATTCTAATATAATAATCAGTAAATATGAAATAAATTCCAAGAAAAAATGAACATAATATTGAAAGAAAGACAAATAGTAATATCTTTAAGTGACTTTGAACTAGTGACTTTGATATCAAAACTACATGTCTCCCAAGTATAAAATTTATTCTGGCTATATAGCTTCTAAGAGGGAGATCTCTTGTCTAACCCCCACTCTGAGTTCTAGACTTACCTAATTTCATATTTGACTCTCCacttgaattcacacaaaagcttgtattcatatattcatagaatctttattcataacaacccaaaactggaagtagcccaaatgtccttcaatggagggatggttgaaTTCTTTACTGAATTACAaaaatcaacacgtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29858568 2866 + 173848474 aaaagtccaaaaacatgggcaaaaactaggaaaagacatataaacataaacagaaaatga-tatataaatggcaaattaacacaggaaaatgtgttcaaaatcattttcatcagcacaatgcaaattaaaaccagtaaaatgctac-aacacatctatcaaaatagataaaataaaaatagtgacaacaccaaatgctagggaggttacagaaagactggatcacgaatataaaactggtcaggatataaaatggtacaactgctctggagagactatagttgcttctt-acaaaattaaacatacacttactatatgacccaataattgcactctttggaatttatgtcagtacaataaaaacatgtgcacacaaaaacttgtatgtgaatgttcatagactctttatttataatagccaaaaactggaaataccccaaatgtcctgcaatggagaaatgcttacac-aaactgtggtat-atccatacaatggaatgctacttagcaataaaaagaaaacaacaatttggtaatctctccaggaaattatgcttaattttttaaaaagtgaattcc-aaaaaattatatactgtatgattccatttatataacatttttgaaataata-ttttagaaatggggaaaagattggtagttacagttggagaatgaagtt-ggagaaggagcagaagagaggtgcgtgtggttatgaaaggataccaagaaagatccttgtggtggaggaactattctgtattttgactatgatggcagatacaggaacatgagataaaactgtgtagaattaaactcagatacacaaaacaaatgaatacaaataaaactggggatatcattcagattcatgggttgtatcagcatcaatatcctgattgtgaaactgtgctgcaatttgttaccat-ggggaggaaccatgtaaagggaaaacagcatctttgtgta-ttttttcttacaactgcatatTGTAATCATACATAAGATTTTAA-TT-AAATGGCAAATCATATTTGTACAAAGATCAAAATACTTAATAAATTATATGTGTTTGAGAATGGCTAAATAGGAATTTC-TGATGAT---AATTTGTACTAGTTATATGCTGGGTAATTTTTTCAATAGCTCTCAAAGTTGTAAATTGTGAATCACATACTTTGTATTATAATTTACCTGTAGATATTATTCAATGTGTGGAAATTATTATTATATACCATAATATTTATTTGAATATTTTAAAAGCAAAAATTAGACAGAACCCTAAGAGCCAAAGTAGGGGACGAGGTGAATTATT-ACACCTATGAGAGAGAATAATATGCAGCTTTAAAatatatatatgtac--atatatataCACACACA----AAGAAAATAGCCAGGTGGACAGATACAGAAAGGTGCACAAATCatatatatgcaaatttttacatatgtacctatatacatataaattatatatgttatgaatgccaaggtgacttgttaaatgatataatcaagatgcagtacaatgtgagtagtatgctaaaatttctgtttaacatttttttctatacgcacatgtacttctgaatggacataaaagaaactgataactgttgtagtctctaggaagagaaactggctgtcaaggaaacaaaggcagaagaaatactctttttcgtgg-----------attttgaattttgtaccatgttcatatattatgtactcaaaaaacaaaATTATTTTCTTTAAAAATAAGCATGGCAATACTATGCACAAATATATAGTTGTGAAAAAGAGCAGTGAACTGAGCATCTAAAATATTTAGGCCCAGTAATATTATGTATAAATGGCAGTGTATATGACAAGTACAGTCTGTTTTATAGATGGCAAAGTGGAGACTGTGACTTACTTTGGACTAGAAAGTCGTTACTTCGGCATCTGTTTTACAGATTATACTTGTCATACGCACTTCTCTGTTTTATCAAATCAAAGGCACTATTCCAtttattc----tttttttttttcaagactgtcttgctctgtcacctaggctggagtacagtcgtgcaatcttggctcactgcaacctccgtctcctgggttcaagcaattctcaggcttcaacctcccagatagctgggattacaggtacgcatcaccacactgtgctaatttttgta-ttttagtagagacaaggttttaccacgttggccagcctggtttctagtgcctgatctcaagtgatct-----gcccacctcggcctcccaaagtgttaggatcacaggtgtaagccaccatgcctggccACCATTTATTCTTATAGGTAGAATTTTGCATGTCTGTCTACTCATTGGAATATCAGATTATTAGAGGT--GAAAAAAACTGAAAGTATCTTATTCTTCATATTCTTACAATTCCTATACCATGTAGAAAAACAGAACAATGGTGTAGAAAAATAATCTATAGAATAAAATTGGTCGCTTATTCTGGCTATCCATGTACTCTTACAAATGACTG-------------TTATTCTAATATAATAATTAGTAAATATGAAATAAATTCCAAGAAAAAATGAACATAATATTGAAAGAAAGACAAATAGTAATATCTTTAAGTGACTTTGAACTAGTGACTTTGATATCAAAACTACATGTGTTCCAAGTATAAAATTTATTCTGGCTATATAGCTTCTAAGAGGGAGATCTCTTGTCTAACCCCCACTCTGAGTTCTAGACTTACCTAATTTCATATTTGACTCTCCacttgaattcacacaaaagcttgtattcatatattcatagaatctttattcataacaacccaaaactggaagtagcccaaatgtccttcaatggagggatggttgaaTTCTTTACTGAATTACAaaaatcaacacgtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5661479 2871 +   6154872 ataagtccaaaaacatgggcaaaaactaggaaaagacatacaaacataaacagaaaatga-tacataaatggcaaattaacacaggaaaatgtgttcaaaatcattttcatcagcacaatgcaaattaaaaccagtaaaatgctac-aacacatctatcaaaatagataaaataaaaatagttacaacaccaaatgctagggaggatacagaaagactggatcatgaatataaaactggtcagcatataaaatggtacaacttctctggagagagtatagtcgtttctt-acaaaattaaacatacacttactatatgacccaacaattgcactctttggaattcatgtcagtacaataaaaacatgttcacacaaaaacttgtatgtgaatgttcatagactctttatttataatagccaaaaactggaaataccccaaatgtcctgcaatggagaaatgcttacac-aaactgtggtat-atccataccatggaatgctacttagcaataaaaagaaaacagcaatttggtaaactctccaggaaattatgcttaattttttaaaaagtgaattcc-aaaaaattatatactgtatgattccatttatataacatttttgaaataata-ttttagaaatggggaaaagattggtagttacagctggagaatgaagtt-ggagaaggagcagaagagaggtgggtgtggttatgaaaggataccaagaaagatccttgtggtggaggaactattctgtattttgactataatggcagatacaggaacatgagataaaactgtgtagaattaaactcagatacacaaaacaaatgaatacaaataaaactggggctatcattcagattcatgggttgtatcagcatcaatatcctgattgtgaaactgtgctgcaatttgttaccat-ggggaggaaccatgtaaagggaaaacagcatctttgtgta-ttttttcttacaactgcatatTGTAATCATACATAAGATTTTAA-TT-AAATGGCAAATCATATTTGTACAAAGATCAAAATACTTAATAAATTATATGTGTTTGAGAATGGCTAAATAGGAATTTC-TGATGAT---AATTTGTACTAGTTATATGCTGGGTAGTTTTTTCAATAGCTCTCAAAGTTGAAAATTGTGAATCACATACTTTGTATTATaatttacctgtagatattattcaatgtgcggaaatcattactatataccatattatttatttgagtattttaaaagcaaaaattagacagaaccctaacagccaaagtaggggacgaggtgaattattaacacctatgagagagaataatatgcagctttaaaaTATATATATGTAC--ATATATATACACACACA----AAGAAAATAGCCAGGTGGATAGATACAGAAAGGTGCACAAATCATATATATGCAAATTTTTACATATGTACCTATATACATATAAATtatatatgttatgaatgccaaggtgacttgttaaatgatataatcaagatgcagtacaatgtgagtagtatgctaaaatttctgtttaacaattttttctatatgcacatgtacttctgaatggacataaaagaaactgataactgttgtagtctctaggaagagaaactggctgtcaaggaaacaaaggcagaagaaatactctttttagtat-----------attttgaattttgtaccatgttcacatattatgtactcaaaaaacgaaATTATTTTATTTAAAAATAAGCATGGCAATACTATGCCCAAATATATAGTTGTGAAAAAGAGCAGTGAACTGAGCATCTAAACTATTTAGGCCCAGTAATATTATGTATAAATGGCAGTGTATATGACAAGTACAGTCTGTTTTATAGATGGCAAAGTGGAGACTGTGACTTACTTTGGACTAGAAAGTCGTTACTTCGGCATCTGTAAAACAGATTATACTTGTCATACGCACTTCTCTGTTTTATCAAATCAAAGGCACTATTCCAtttattctttttttttttttttcaagactgtcttgctctgtcacccaggctggagtacagtcgtgcaatcttggctcactgcaacctccgtctcctgggttcaagcaattctcaggcttcaacctcccagatagctgtgattacaggtacgcatcaccacactgtgctaatttttgta-ttttagtagagacaaggttttaccacgttgaccagcctggtttccagcgcctgatctcaagtgatct-----gcccacctcggcctcccaaagtgttaggatcacaggtgtaagccaccatgcctggccACCATTTATTCTTATAGGTAGAATTTTGCATGTCTGTCTACTCATTGGAATATCAGATTATTAGAGGC--GAAAAAAACTGAAAGTATCTTATTCTTCATATTCTTACAGTTCCTATACCATGTAGAAAAACAGAACAATGGTGTGGAAAAATAATCTATAGAATAAAATTCGTCACTTATTCTGGCTATCCATGTACTCTTACAAATGACTG-------------TTATTCTAATATAATAATTAGTAAATATGAAATAAATTCCAAGAAAAAATGAACATAATATTGAAAGAAAGACAAATAGTAATATCTTTAAGTGACTTTGAACTAGTGACTTTGATATCATAACTACATGTCTTCCAAGTATAAAATTGATTCTGGCTATATAGCTTCTAAGAGGGAGatctctagtctaacccccactctgagttctagacttatctaatttcatatttgactctccacttgaattcacacaaaagcttgtattcatatattcatagaatctttattcataacagcccaaaactggaagtagcccaaatgtccttcaatggagggacggttgaaTTCTTTACTGAATTACAaaaatcaacatgtc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29879530 2889 + 172585720 aaaagtccaagaacatgggccaaaactaggagcaggcatacaaacataaacagaaaatga-tatataaatgacaaattaacacaggaaaaggtgatcaaaatcattttcatcagcacaatgcaaattaaaaccagtaaaatgctac-aacacatctatcaaaataggtaaaataaaaatagtgacaccaccaaatgctagggaggatacagaaagactggatcacaaatataatactggtcaggatataaaatggtacaactgctctggagggagtatagtcgcttctt-acaaaattaaacatacgcttactatatgactcaacaattgcactctttggaatttatgtcagtacaataaaaacatgttcacacaaaaacttgtatgtgaattttcatagactctttatttataatagcccaaaactggaaataccccaaatgtcctgcattggagaaatggttacac-aaactgtggtat-atccataccatggaatgctacttagcaataaaaagaaaacaacaatttggtaaactctccaggaaattatgcttaatttttttaaaagtgaattccaaaaaaattatatactgtatgattccatttatgtaacatttttgaaataata-ttttagaaatggggaaaagattggtagttacagttggagaatgaagtt-ggagaaggagcagaggagaggtgagtgtggtcacgaaagggtaccaagaaagatccttgtggtgatggaactcttctgtattttgactatgatggcagatacaggaacttgagataaaactgtgtagaattaaactcagatacacagaacaattgaatacaaataaaactggggctatcattcagattcatgggttgtatcagcatcaatattctgattgtgatactgtgctgcaatttgttacctt-ggggaggaaccacgtaaaaggaaaacagcatctgtgtgta-ttctttcttacaactgcatatgGTAATTATACATAAGATTTTAA-TTAAAATGGCAAATCATATCTGTACAAAGATCAAAATACTTAATAAATTATATATGTTCGAGAATGGCTAAATAGGAATTTC-TGATAATGACAATTTGTACTAGTTATATGCTGGGTAATTTTTTCAATAGCTCTCAAAGTAGAAAATTATGAATCACATACTTTGTATTATaatttacctgtagatattattcaatatgtggaaatcattattatataccacaatatttatttgagtattttaaaagcaaacattagacagaagtctaacagccaaaataggggactagataaattatt-acacctataagagagaataatatgcagctttaaaatacatatatgtacatatatatataCACACACACACGAAGAAAATAGCTAGGCAGATAGGTACAGAAAGGTGCACAATTCatatatatgcagatttttacatatgtacatatacacatagaaattatatatGTTATTAATGccaaggtgacttgttaaatgctataaccaagatgcagtaccatgtgagtagtatgctaaaatatctg-ttaa-aattttttctataggcacatgtacttctaaatggacataaaagaaactggtaacagttgtagtctctaggaagagaaactggctggcaaggagacaaaggcagatt---tcttctttttaatatattttgaatatattttgaattttgtaccatattcatatattatgtactcaaaaaacaaaATTATTTTCTCTAAAAATAAGCATGGCAATACTATGCACCAATATATAGTTGTGAAAAAGAGCAGTGAACTGAGCATCTAAAATATTTAGGCCCAGTGATATTATGTATAAATGGTAGTGTGTATGACAAGTACAGTCTGTTTTGTAGATGGCAAAGTGGAGACTGTAACTTACTTTGGACTCGAAAGTCTCTACTTTGGCATCTGTAAAACAGATTATACTTGTCATATGCTTTTCTCTGTTTTATCAAATCTAAGACAATATTCAAtttgttct---ttttttttttccaagacagtcttgctctgtcacccaggctggagcacagaggcgcaatttcggctcactgcaacctccacctcctgagttcaagcaattctcatgcttcaacctcccagatagctgagattacaggcatgcaccaccacactgtgctaattgttgcatttttagcagagacaaggttttaccaggttggccagcctggtttccagtgcctgatctcaagtgatct-----ccccacctcggcctcccaaagtgttaggattacaggtgtaagccaccatgcctggccACCATTTATTCTTAAAGGTAGAATTTTACATGTCTGTCTACTCACTGGAATATCAGATTGTTAGAGGT-GAAAAAAAACTAAGAGTATCTTATTCTTCATATTCTTACAGTTCCTATATCATGTAGAAAATCAGAACAATGGTGTGG-AAAATGATCTATAGAATAAAATTGGTCACTTATTCTGGCTATCCATGTACTCTTACAAATGACTGTtaaaataaacaattattctaatataataatt-gtaaatataaaataaATTCCAAG-AAAAATAAGC-----ATTAAAAGAAAGACAAATAGTAATATTTTTAAGTAACTTTGAACTAGTGACTTTGATATCATAACTACA--TCTTCCAAGTATAAAATTAGTTCTGGCTGTATAGCTTCTAAGAGGGAGATTTCTACTCTAACCCCCACTCTGAGTTCTAGACTTATCTAATTTCATATTTGACTCTCCacttgaattcacacaaaacagtgtatgtatatattcatagaatctttattcataacagcccaaaactggaaatagcccaaatgtccttcgatggagggatggttgaaTTCTTCACTGAATTACAAAAATCAACATGTC
i rheMac8.chr4             I 354 I 865
s macFas5.chr4             29542506 2887 - 170955103 aaaagtccaagaacatgggccaaaactaggagcaggcatacaaacataaacagaaaatga-tatataaatgacaaattaacacaggaaaaggtgatcaaaatcattttcatcagcacaatgcaaattaaaaccagtaaaatgctac-aacacatctatcaaaataggtaaaataaaaatagtgacaccaccaaatgctagggaggatacagaaagactggatcacaaatataatactggtcaggatataaaatggtacaactgctctggagggagtatagtcgcttctt-acaaaattaaacatacgcttactatatgactcaacaattgcactctttggaatttatgtcagtacaataaaaacatgttcacacaaaaacttgtatgtgaattttcatagactctttatttataatagccaaaaactggaaataccccaaatgtcctgcaatggagaaacggttgcac-aaactgtggtat-atccataccatggaatgctacttagcaataaaaagaaaacaacaatttggtaaactctccaggaaattatgcttaattttttaaaaagtgaattccaaaaaaattatatactgtatgattccatttatgtaacatttttgaaataata-ttttagaaatggggaaaagattggtagttacagttggagaatgaagtt-ggagaaggagcagaggagaggtgagtgtggtcacgaaagggtaccaagaaagatccttgtggtgatggaactcttctgtattttgactatgatggcagatacaggaacatgagataaaactgtgtagaattaaactcagatacacagaacaattgaatacaaataaaactggggctatcattcagattcatgggttgtatcagcatcaatattctgattgtgatactgtgctgcaatttgttacctt-ggggaggaaccacgtaaaaggaaaacagcatctttgtgta-ttttttcttacaactgcatatgGTAATTATACATAAGATTTTAA-TTAAAATGGCAAATCATATCTGTACAAAGATCAAAATACTTAATAAATTATATATGTTCGAGAATGGCTAAATAGGAATTTC-TGATAATGACAATTTGTACTAGTTATATGCTGGGTAATTTTTTCAATAGCTCTCAAAGTAGAAAATTATGAATCACATACTTTGTATTATaatttacctgtagatattattcaatatgtggaaatcattattatataccataatatttatttgagtattttaaaagcaaacattagacagaagcctaacagccaaaataggggactaggtgaattatt-acacctataagagagaataatatgcagctttaaaatacatatatgtacatatatatataCACACACA--CGAAGAAAATAGCTAGGCAGATAGGTACAGAAAGGTGCACAATTCatatatatgcagatttttacatatgtacatatacacatagaaattatatatGTTATTAATGccaaggtgacttgttaaatgctataaccaagatgcagtaccatgtgagtagtatgctaaaatatctgtttaa-aattttttctataggcacatgtacttctaaatggacataaaagaaactggtaacagttgtagtctctaggaagagaaactggctggcaaggagacaaaggcagatt---tcttctttttaatatattttgaatatattttgaattttgtaccatattcatatattatgtactcaaaaaacaaaATTATTTTCTCTAAAAATAAGCATGGCAATACTATGCACCAATATATAGTTGTGAAAAAGAGCAGTGAACTGAGCATCTAAAATATTTAGGCCCAGTGATATTATGTATAAATGGTAGTGTGTATGACAAGTACAGTCTGTTTTGTAGATGGCAAAGTGGAGACTGTAACTTACTTTGGACTCGAAAGTCTCTACTTTGGCATCTGTAAAACAGATTATACTTGTCATATGCTTTTCTCTGTTTTATCAAATCTAAGACAATATTCCAtttgttc----ttttttttttccaagacagtcttgctctgtcacccaggctggagcacagaggtgcaatttcggctcactgcaacctccacctcctgagttcaagtgattctcatgcttcaacctcccagatagctgagattacaggcatgcaccaccacactgtgctaattgttgcatttttagcagagacaaggttttaccaggttggccagcctggtttccagtgcctgatctcaagtgatct-----ccccacctcggcctcccaaagtgttaggattacaggtgtaagccaccatgcctggccACCATTTATTCTTAAAGGTAGAATTTTACATGTCTGTCTACTCACTGGAATATCAGATTGTTAGAGGT-GAAAAAAAACTAAGAGTATCTTATTCTTCATATTCTTACAGTTCCTATATCATGTAGAAAATCAGAACAATGGTGTGG-AAAATGATCTATAGAATAAAATTGGTCACTTATTCTGGCTATCCATGTACTCTTACAAATGACTGTtaaaataaacaattattctaatataataatt-gtaaatataaaataaATTCCAAG-AAAAATAAGC-----ATTAAAAGAAAGACAAATAGTAATATTTTTAAGTAACTTTGAACTAGTGACTTTGATATCATAACTACA--TCTTCCAAGTATAAAATTAGTTCTGGCTGTATAGCTTCTAAGAGGGAGATTTCTACTCTAACCCCCACTCTGAGTTCTAGACTTATCTAATTTCATATTTGACTCTCCacttgaattcacacaaaacagtgtatgtatatattcatagaatctttattcataacagcccaaaactggaaatagcccaaatgtccttcgatggagggatggttgaaTTCTTCACTGAATTACAAAaatcaacatgtc
i macFas5.chr4             I 354 I 853
s macNem1.NW_012011356v1    2528925 2880 -   2996164 aaaagtccaagaacatgg--ccaaactaggagcaggcatac-aacataaacagaaaatgagtatataaatgacaaattaacacaggaaaaggtgatcaaaatcattttcatcagcacaatgcaaattaaaaccagtaaaatgctacaaacacatctatcaaaataggtaaaat-aaaatagtgacaccaccaaatgctagggaggatacagaaagactggatcacaaatataatactggtcaggatataaaatggtacaactgccctggagggagtatag-cgcttcttaacaaaattaaacatacgcttactatatgactcaacaattgcactctttggaatttatgtcagtacaataaaaacatgttcacacaaaaacttgtatgtgaa-tttcatagactctttatttataatagccaaaaactggaaataccccaaatgtcctgcattggagaaatggttacacaaaaatgtggtataatccataccatggaatgc-acttagcaataaaaagaaaacaacaatttggtaaactctccaggaaattatgc-taatttttt-aaaagtgaattccaaaaaaattatatactgtatgattccatttatgtaacatttttgaaataatatttttagaaatggggaaaagattggtagttacagttggagaatgaagttgggaggagcagaggaggagaggtgagtgtggtcacgaaa-ggtacc-agaaagatccttgtggtg-tggaactcttctgtattttgactatgatggcagatacaggaacatgggataaaactgtgtagaattaaactcagatacacagaacaattgaatacaaataaaactggggctatcattcagattcatgggttgtatcagcatcaatattctgattgtgatactgtgctgcaatttgttaccttgggggaggaaccacgtaaaaggaaaacagcatctgtgtgtatttttttcttacaactgcatatggtaattatacataagattttaatttaaaaTGGCAAATCATATCTGTACAAAGATCAAAAT-CTTAATAAATTATATATGTTCGAGAATGGCTAAATAGGAATTTCTTGATAATG-CAATTTGTA-TAGTTATATGCT-GGTAATTTTTTCAATAGCTCTCAAAGTAGAAAATTATGAATCACATACTTTGTATTATaatttacctgtagatattattgaatatgtggaaatcattattatataccataatatttatttgagcattttaaaagcaaacattagacagaagcctaacagccaaaataggggactaggtgaattatt-acacctataagagagaatattatgcagctttaaaaTACACATATGTACATATATATATACCCACACA----AAGAAAATAGCTAGGCGGATAGGTACAGAAAGGTGCACAATTCATACATATGCAGATTTTTACATATGTACATATACACATAGAAATTATATATGTTATTAATGccaaggtgacttgttaaatgctataaccaagatgcagtacaatgtgagtagtatgctaaaatatctgtttaa-aattttttctataggcacatgtacttctaaatggacataaaagaaactggtaacagttgtagtctctaggaagagaaactggctggcaaggagacaaaggcagatt---tcttctttttaatatattttgaatatattttgaattttgtaccatattcatatattatgtactcaaaaaacaaaATTATTTTCTTTAAAAATAAGCATGGCAATACTATGCACAAATATATAGTTGTGAAAAAGAGCAGTGAACTGAGCATCTAAAATATTTGGGTCCAGTGATATTATGTATAAATGGTAGTGTGTATGACAAGTACAGTCTGTTTTGTAGATGGCAAAGTGGAGACTGTAACTTACTTTGGACTCGAAAGTCTCTACTTTGGCATCTGTAAAACAGATTATACTTGTCATATGCTTTTCTCTGTTTTATCAAATCTAAGACAATATTCCAtttgttc----ttttttttttccaagacagtcttgctctgtcacccaggctggagcacagaggcgcaatttcggctcactgcaacctccacctcctgagttcaagcaattctcatgcttcaacctcccagatagctgagattacaggcatgcaccaccacactgtgctaattgttgcatttttagcagagacaaggttttaccaggttggccagcctggtttccagtgcctgatctcaagtgatct-----ccccacctcggcctcccaaagtgttaggattacaggtgtaagccaccatgcctggccACCATTTATTCTTAAAGGTAGAATTTTACATGTCTGTCTACTCACTGGAATATCAGATTGTTAGAGGT-GAAAAAAAACTAAGAGTATCTTATTCTTCATATTCTTACAGTTCCTATATCATGTAGAAAATCAGAACAATGGTGTGG-AAAATGATCTATAGAATAAAATTGGTCACTTATTCTGGCTATCCATGTACTCTTACAAATGACTGTtaaaataaacaattattctaatataataatt-gtaaatataaaataaATTCCAAG-AAAAATAAGC-----ATTAAAAGAAAGACAAATAGTAATATTTTTAAGTAACTTTGAACTAGTGACTTTGATATCATAACTACA--TCTTCCAAGTATAAAATTAGTTCTGGCTGTATAGCTTCTAAGAGGGAGATTTCTACTCTAACCCCCACTCTGAGTTCTAGACTTATCTAATTTCATATTTGACTCTCCacttgaattcacacaaaacagtgtatgtatatattcatagaatctttattcataacagcccaaaactggaaatagcccaaatgtccttcgatggagggatggttgaaTTCTTCACTGAATTACAAAAATCAACATGTC
i macNem1.NW_012011356v1   I 345 I 852
s cerAty1.NW_012002711v1     281028 2892 +    766320 agaagtccaagaacatgggcaaaaactaggaacagacatacaaacataaacagaaaatga-tatataaatgacaaattaacacaggaaaaggtgatcaaaatcattttcatcagcacaatgcaaattaaaaccagtaaaatgctac-aacacatctatcaaaataggtaaaataaaaatagtgacaccaccaaatgctagggaggatacagaaagactggatcacaaatataatactggtcaggatataaaatggtacaactgctctggagggagtatagtcgcttctt-atgaaattaaacatacgcttactatattactcaacaattgcactctttggaatttatgtcagtacaataaaaacatgttcacacaaaaacttgtatgtgagtgttcatagactctttatttataatagccaaaaactggaaataccccaaatgtcctgcaatggagaaatggttgcac-aaactgtggtgt-atccataccgtggaatgctacttagcaataaaaagaaaacaatgatttggtaaactctccaggaaattatgtttaattttttaaaaagtgaattccaaaaaaattatatactgtatgattccatgtatataacatttttgaaataatg-ttttagaaatggggaaaagattggtagttacagttggagaatgaagtt-ggagaaggagcagaggagaggtgagtgtggtcatgaaagggtaccaagaaagatccttgtggtgatggaactcttctgtattttgactatgatggcagatacaggaacatgagataaaactgtgtagaattaaactcagatacacagagcaattgaatacaaataaaactggggctatcattcagattcatgggttgtatcagcatcaatattctgattgtgatactgtgctgcaatttgttacctt-ggggaggaaccacgtaaaaggaaaacagcatctttgtgta-ttttttcttacaactgcatatgGTAATTATACATAAGATTTTAA-TTAAAATGGCAAATCATATCTGTACAAAGATCAAAATACTTAATAAATTATATATGTTTGAGAATGGCTAAGTAGGAATTTC-TGATAATGGCAATTTGTACTCGTTATATGCTGGGTAATTTTTTCAATAGCTCTCAAAGTAGAAAATTATGAATCACATACTTTGTATTATaatttacctgtagatgttattcaatatgtggaaatcattattatataccataatatttatttgagtattttaaaagcaaacattagacagaagcctaacagccaaaataggggactaggtgaattatt-acacctataagagagaataatatgcagctttaaaatacatatatgtacatatatatataCACACACA----AAGAAAATAGCTAGGTGGATAGGTACAGAAAGGTGCACAATTCatatatatgcagatttttacatatgtacatatacacatagaaattatatatGTTATTAATGccaaggtgacttgttaaatgctataaccaagatgcagtacaatgtgagtagtatgctaaaatatctgtttaa-aattttttcaataggcacatgtacttctaaatggacataaaagaaactggtaacagttgtagtctctaggaagagaaactggctggcaaggaggcaaaggcagatt---tcttctttttaatatattttgaatatattttgaattttgtaccatattcatatattatgtactcaaaaaacaaaATTATTTTCTCTAAAAATAAGCATGGCAATACTATGCACAAATACATAGTTGTGAAAAAGAGCAGTGAACTGAGCATCTAAAATATTTAGGCCCAGTGATATTATGTATAAATGGTAGTGTGTATGACAAGTACAGTCTGTTTTGTAGATGGCAAAGTGGATACTGTAACTTACTTTGGACTGGAAAGTCTCTACTTTGGCATCTGTAAAACAGATTATACTTGTCATATGCTTTTCTCTGTTTTATCAAATCTAAGGCACTATTCCAtttattc----ttttttttttccaagactgtcttgctctgtcacccaggctggagcacagaggcgcaatttcggctcactgcaacctccacctcctgagttcaagcaattctcatgtttcaacctcccagatagctgagattacaggcatgcaccaccacactgtgctaattgttgcatttttagtagagacacggttttaccaggttggccagcctggtttccagtgcctgatctcaagtgatctccccaccccacctcggcctcccaaagtgttaggattacaggtgtaagccaccatgcctggccACCATTTATTCTTAAAGGTAGAATTTTACATGTCTGTCTACTTACTGGAATATCAGATTATTAGAGGTGGAAAAAAAACTAAGAGTATCTTATTCTTCATATTCTTACAGTTCCTATATCGTGTAGAAAATCAGAACAATGTTGTGG-AAAATGATCTATAGAATAAAATTGATCACTTATTCTGGCTATCCATGTACTCTTACAAATGACTGTTAAAATAAACAATTATTCTAATATAATAATT-GTAAATATGAAATAAATTTCAAGAAAAAATAAGC-----ATTAAAAGAAAGACAAATAGTAATATCTTTAAGTAACTTTGAACTAGTGACTTTGATATCATAACTACA--TCTTCCAAGTATAAAATTAATTCTGGCTGTATAGCTTCTAAGAGGGAGATCTCTACTCTAGCCCCCACTCTGAGTTCTAGACTTACCTAATTTCATATTTGACTCTCCacttgaattcacacaaaaccgtgtatgtatatattcatagaatctttattcataacagaccaaaactggaaatagcccaaatgtccttcgatggaggaatggttgaaTTCTTCACTGAATTACAGaaatcaacatgtc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28783246 2882 -  71996105 aaaagtccaagaacatgggcaaaaactaggaacagatatacaaatataaacagaaaatga-tatataaatgacaaattaacacaggaaaaggtgatcaaaatcattttcatcagcacaatgcaaattaaaaccagtaaaatgctac-aacacatctatcgaaataggtaaaataaaaatagtgacaccaccaaatgctagggaggatacagaaagactggatcacaaatataatactggtcaggatataaaatggtgcaactgctctggagggagtatagtcgcttctt-acaaaattaaacatacacttactatatgactcaacaattgcactctttggaatttatgtcagtacaataaaaacatgttcacacaaaaacttgtatgtgaatgttcatagactctttatttataatagccaaaaactggaaataccccaaatgtcctgcaacagagaaatggttacac-aaactgtggtat-atccataccgtggaatgctacttaccaataaaaagaaaacaatgatttggtaaactctccaggaaattatgcttaatttttttaaaagtgaattccaaaaaaattatatactgtatgattccatttatataacatttttgaaataata-ttttagaaatggggaaaagattggtagttacagttggagaatgaagtt-ggagaaggagcagaggagaggtgagtgtggtcatgaaagggtagcaagaaagatccttgtggtgatggaactcctctgtattttgactatgatggcagatacaggaacatgagataaaactgtgtagaattaaactcagatacacagaacaatggaatacaaataaaactggggctatcattcagattcatgggttgtatcagcatcaatattctgatcgtgatactgtgctgcaatttgttacctt-ggggaggaaccacgtaaaaggaaaacagcatctttgtgta--tttttcttacaactgcatatgGTAATTATACATAAGATTTTAA-TTAAAATGGCAAATCATATCTGTACAAAGATCAAAATACTTAATAAATTATATATGTTTGAGAATGGCTAAATAGGAATTTC-TGATAATGGCAATTTGTACTAGTTATATGCTGGGTAATTTTTTCAATAGCTCTCAAAGTAGAAAATTATGAATCACATACTTTGTATTATAATTTACCTGTAGATATTATTCAATATGTGGAAATCATTATTATATACCATAATATTTA--TGTGTATTTTAAAAGCAAACATTAGACAGAAGCCTAACAGCCAAAATAGGGGACTAGGTGAATTATT-ACACCTATAAGAGAGAATAATATGCAGCTTTAAAatacatatatgtacatatatatataCACACACA----AAGAAAATAGCTAGGCGGATAGGTACAGAAAGGTGCACAATTCatatatatgcagatttttacatatgtacatatacacatagaaattatatatGTTATTAATGccaaggtgacttgttaaatgctataaccaagatgcagtacaatgtgagtagtatgctaaaatatctgtttaa-aattttttctataggcacatgtacttctaaatggacataaaagaaattggtaacagttgtagtctctaggaagagaaactggctggcaaggagacaaaggcagatt---tcttctttttaatatattttgaatatattttgaattttgtaccatattcatatattatgtactcaaaaaacaaaATTATTTTCTCTAAAAATAAGCATGGCAATACTATGCACAAATATACAGTTGTGAAAAAGAGCAGAGAACTGAGCATCTAAAATATTTAGGCCCAGTGATATTATGTATAAATGGTAGTGTGTATGACAAGTACAGTCTGTTTTGTAGAAGGCAAAGTGGAGACTGTAACTTACTTTGGACTCGAAAGTCTCTACTTTGGCATCTGTAAAACAGATTATACTTGTCATATGCTTTTCTCTATTTTATCAAATCTAAGGCACTATTCCAtttattc----ttttttttttccaagaccgtcttgctctgtcacccaggctggagcacagaggcgcaatttcggctcactgcaacctccacctcctgagttcaagcaattctcatgcttcaacctcccagatagctgagattacaggcatgcaccaccacactgtgctaattgttgcatttttagtagagacaaggttttaccaggttggccagcctggtttccagtgcctgatctcaagtgatct-----ccccacctcggcctcccaaagtgttaggattacaggtgtaagcctccatgcctggccACCATTTATTCTTAAAGGTAGAATTTTACATGTCTGTCTACTCACTGGAATATCAGATTGTTAGAGGT-GAAAAAAAAGTAAGAGTATCTTATTCTTCATATTCTTACAGTTCCTATATCATGTAGAAAATTAGAACAATGGTGTGG-AAAATGATCTATAGAATAAAATTGGTCACTTATTCTGGCTATCCATGTACTCTCACAAATGACTGTtaaaataaacaattattctaatataataatt-gtaaatataaaataaATTCCAAG-AAAAATAAGC-----GTTAAAAGAAAGACAAATAGTAATAGATTTAAGTAACTTTGAACTAGTGACTTTGATATCATAACTACA--TCTTCCAAACATAAAATTAATTCTGGCTGTATAGCTTCTAAGAGGGAGATCTCTACTCTAGCCCCCACTCTGAGTTCTAGACTTATCTAATTTCATATTTGACTCTCCacttgaattcacacaaaaccgtgtatgtatatattcatagaatctttattcataacagcccaaaactggaaatagcccaaatgtccttcgatggagggatggttgaaTTCTTCACTGAATTACAaaaatcaacatgtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     265276 2891 -    352859 aaaagtccaagaacatgggcaaaaactaggaacagacatacaaacataaacagaaaatga-tatataaatgacaaattaacacaggaaaaggtgatcaaaatcattttcatcagcacaatgcaaattaaaaccagtaaaatgctac-aacacatctatcaaaataggtaaaataaaaatagtgacaccaccaaatgctagggaggatacagaaagactggatcacaaatataatactggtcaggatataaaatggtacaactgctctggagggagtatagtcgcttctt-acaaaattaaacatatgcttactatatgacccaacaattgcactctttggaatttatgtcagtacaataaaaacatgttcacacaaaaacttgtatgtgaatgttcatagactctttatttataatagccaaaagctggaaataccccaaatgtcctgcaatggagaaatggttgcac-aaactgtggtat-atccataccgtggaatgctacttaccaataaaaagaaaacaatgatttggtaaactctccaggaaattatgtttaatttttcaaaaagtgaattcc-aaaaaattatatactgtatgattccatctatataacatttttgaaacaata-ttttagaaatgaggaaaagattggtagttacagttggagaatgaagtt-ggagaaggagcagaggagaggtgagtgtggtcatgaaagggtaccaagaaagatccttgtggtgatggaactcttctgtattttgactatgatggcagatacaggaacatgagataaaactgtgtagaattaaactcagatacacagagcaattgaatacaaataaaactggggctatcattcagattcatgggttgtatcagcatcaatattctgattgtgatactgtgctgcaatttgttacctt-ggggaggaaccacgtaaaaggaaaacagcatctttgtgta-ttttttcttacaactgcatatgGTAATTATACATAAGATTTTAA-TTAAAATGGTAAATCATATCTGTACAAAGATCAAAATACTTAATAAATTATATATGTTTGAGAATGGCTAAGTAGGAATTTC-TGATAATGGCAATTTGTACTAGTTATATGCTGGGTAATTTTTTCAATAGCTCTCAAAGTAGAAAATTATGAATCACATACTTTGTATTATaatttacctgtagatattattcaatatgtggaaatcattattatataccataatatttatttgagtattttaaacgcaaacattagacagaagcctaacagccaaaataggggactaggtgaattatt-acacctataagagagaataatatgcagctttaaaatacatatatgtacatatatatatatacacaca----aagaaaatagctaggtggataggtacagaaaggtgcacaattcatatatatgcagatttttacatatgtacatatacacatagaaattatatatGTTATTAATGccaaggtgacttgttaaatgctataaccaagatgcagtacaatgtgagtagtatgctaaaatatctgtttaa-aattttttcaataggcacatgtacttctaaatggacataaaagaaactggtaacagttgtagtctctaggaagagaaactggctggcaaggaggcaaaggcagatt---tcttctttttaatatattttgaatacattttgaattttgtaccatattcatatattatgtactcaaaaaacaaaATTATTTTCTCTAAAAATAAGCATGGCAATACTATGCACAAATACATAGTTGTGAAAAAGAGCAGTGAACTGAGCATCTAAAATATTTAGGCCCAGTGATATTATGTATAAATGGTAGTGTGTATGACAAGTACAGTCTGTTTTGTAGATGGCAAAGTGGAGACTGTAACTTACTTTGGACTCGAAAGTCTCTACTTTGGCATCTGTAAAACAGATTATACTTGTCATATGCTTTTCTCTGTTTTATCAAATCTAAGGCACTATTCCAtttattc----ttttttttttccaagaccgtcttgctctgtcacccaggctggagcacagaggcgcaatttcggctcactgcaacctccacctcctgagttcaagcaattctcatgcttcaacctcccagatagctgagattacaggcatgcaccaccacactgtgctaattgttgcatttttagtagagacaaggttttaccaggttggccagcctggtttccagtgcctgatctcaagtgatctccccaccccacctcggcctcccaaagtgttaggattacaggtgtaagccaccatgcctggccACCATTTATTCTTAAAGGTAGAATTTTACATGTCTGTCTACTCACTGGAATATCAGATTATTAGAGGTGGAAAAAAAACTAAGAGTATCTTATTCTTCATATTCTTACAGTTCCTATATCGTGTAGAAAATCAGAACAATGGTGTGG-AAAATGATCTATAGAATAAAATTGGTCACTTATTCTGGCTATCCATGTACTCTTACAAATGACTGTTAAAATAAACAATTATTCTAATATAATAATT-GTAAATATGAAATAAATTTCAAGAAAAAATAAGC-----ATTAAAAGAAAGACAAATAGTAGTATCTTTAAGTAACTTTGAACTAGTGACTTTGATATCATAACTACA--TCTTCCAAGTATAAAATTAATTCTGGCTGTATAGCTTCTAAGAGGGAGATCTCTACTCTAGCCCCCACTCTGAGTTCTAGACTTATCTAATTTCATATTTGACTCTCCacttgaattcacacaaaaccgtgtatgtatatattcatagaatctttattcataacagaccaaaactggaaatagcccaaatgtccttcgatggagggatggttgaaTTCTTCACTGAATTACAaaaatcaacatgtc
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570741           533270 3091 +   1532071 I
e proCoq1.NW_012152574v1     395505 4558 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2062549 1305 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=986574.000000
s hg38.chr6_GL000254v2_alt   651191 543 +   4827813 aaacagaacgcatcctctttccaagcatg---ctctcacagtgtttcaacgtagtgaacagaataaaaaccatctagttgttcaaaccagaaatgtgagaaccacattgatttctccttcgcttcaatccactctctttaagtcagtcatcaagtctctgaaacatccctcaaattcacgtctctttatccacactgccgcaatcctggcccaagtcatgattgcctttaaacttaactacttcaaagcagccctacagttcttttcttcccctactctcaagccatcttcatagtgtaaccagaatgattgtttaaaggcctgcgttacagtataaatttctatgtgaaacatttcagtaccttccaactggacaagcttacaaaccctccatgaatgtctgtggcttatctcttcagtctcaccttttatattacttggatgtgatcctactggatatcttccaattcctcaaatatatcaaggtgtcccttgacagggacttcattcatgcttgtcctccctggatcactcttTACTTCCCCT
s panTro5.chr6             29623217 543 + 175400573 aaacagaacgcatcctctttccaagcatg---ctctcacagtgtttcaacatagtgaacagaataaaaaccatctagttgttcaaaccagaaatgtgagaaccacattgatttctccttcgcttcaatccactctctttaagtcagttatcaagtctctgaaacatccctcaaattcacgtctctttatccacactgccgcaatcctggcccaagtcatgattgcctttaaacttaactacttcaaagcagccctacagttcttttcttcccctactctcaagccatcttcatagtgtaaccagaatgattgtttaaaggcctgcgttacagtataaatttctatatgaaacatttcagtaccttccaactggacaagcttacaaaccctccatgaatgtctgtggcttatctcttcagtctcaccttttatattacttggatgtgatcctactggatatcttccaattcctcaaatatatcaaggtgtcccttgacagggacttcattcatgcttgtcctccctggatcactcttTACTTCCCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29861434 543 + 173848474 aaacagaacgcatcctctttccaagcatg---ctctcacagtgtttcaacgtagtgaacagaataaaaaccatctagttgttcaaaccagaaatgtgagaaccacattgatttctccttcgcttcaatccactctctttaagtcagttatcaagtctctgaaacatccctcaaattcacgtctctttatccacactgccgcaatcctggcccaagtcatgattgcctttaaacttaactacttcaaagcagccctacagttcttttcttcccctactctcaagccatcttcatagtgtaaccagaatgattgtttaaaggcctgcgttacagtataaatttctatatgaaacatttcagtaccttccaactggacaagcttacaaaccctccatgaatgtctgtggcttatctcttcagtctcaccttttatattacttggatgtgatcctactggatatcttccaattcctcaaatatatcaaggtgtcccttgacagggacttcattcatgcttgtcctccctggatcactcttTACTTCCCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5664350 542 +   6154872 aaacagaacgcatcctctttccaagcatgctcctctcacagtgtttcaacgtagtgaacagaataaaaaccatctagttgttcaaaccagaaatgtgagaaccacactgatttctccttcacttcaatccactctctttaagtcagtcatcaagtctctgaaacatccctcaaattcatgtctctttatccacactgccgcaatcctggcccaagtcatgattgcctttaaacttaactacttcaaagcaaccctacagttcttttcttcccctactctcaagccatcttcatagtgtaaccagaatgattgtttaaaggcctgtgttatagtataaatttctatgtgaaacatttcagtaccttccaactggacaagcttacaacccctccatgaatgtctgtggcttatctcttcagtctcaccttttata----ttggatgtgatcctactggatatcttccaattcctcaaatatatcaaggtgtccctcgacagggacttcattcatgcttgtcctccctggatcactcttTACTTCCCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     283920 544 +    766320 aaacagaatgcatcctctttccaagcatgctcctctcacagtgtctcaacataatgaacagaataagaaccatctagttgttcaaaccagaaatgtgagaaccacattgatttctccttcacttcaat-cactctctttaagtcagtcatcaagtctctgaaacatccctcaaattcatgtctctttatccacactgccacaaccctggcccaagtcataactgcctttcaacttaactactgcaaagcaaccttacagttcttttcttcccctact-tcatgccatcttcatagtgtaaccagaatgattgtttaaagacctgtgttatactataaatttctatgtgaaacatttcagtaccttccaactggacaagcttacaaaccctccatgaatgtctgtggcttatctcttcagtctcagcttttatattacttggatgtggtcatactgggtatcttccaattcctcaaatatatcaaggtgtccatcgacagggacttcattcacacttgtcctccctggatcactcttTACTGCCCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28786128 543 -  71996105 aaacagaatacatcctctttccaagcatgctcctgtcacagtgtctcaacgtagtgaacagaataagaaccatctagttgttcaaaccagaaatgtgaga-ccacattgatttctccttcacttcaat-cactgtctttaagtcagtcatcaagtctttgaaacatccctcaaattcatgtctctttatccacactgccccaaccctggcccaagtcatgactgcctttcaacttaactagcgcaaagcaaccttacagttcttttcttcccccact-tcaagctgtcttcatagtgtaaccagaatgattgtttaaagacctgtgttatagtataaatttctatgtgaagcatttcagtaccttccAACTGGACAAGCTTACAAACCCTCCATGAATGTCTGTGGCTTATTTCTTCAGTCTCAGCTTTTATATTACTTGGATGTGGTCATACTGGGTATCTTCCAATTCCTCAAATATATCAAGGTGTCCATCGACAGGGACTTCATTCACGCTTGTCCTCCCTGGATCACTCTTTACTTCCCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     268167 544 -    352859 aaacagaatgcatcctctttccaagcatgctcctctcacagtgtctcaacgtaatgaacagaataagaaccatctagttgttcaaaccagaaatgtgagagccacattgacttctccttcacttcaat-cactctctttaagtcagtcatcaagtctctgaaacatccctcaaattcatgtctctttatccacactgccacaaccctggcccaagtcataactgcctttcaacttaactactgcaaagcaaccttacagttcttttcttcccctact-tcatgccatcttcatagtgtaaccagaatgattgtttaaagacctgtgttatactataaatttctatgtgaaacatttcagtaccttccaactggacaagcttacaaaccctccatgaatgtctgtggcttatctcttcagtctcagcttttatattacttggatgtggtcatactgggtatcttccaattcctcaaatatatcaaggtgtccatcgacagggacttcattcacacttgtcctccctggatcactctttactgcccct
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570741           533270 3091 +   1532071 I
e proCoq1.NW_012152574v1     395505 4558 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2062549 1305 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e macNem1.NW_012011356v1    2531805 852 -   2996164 I
e macFas5.chr4             29545393 853 - 170955103 I
e rheMac8.chr4             29882419 865 + 172585720 I

a score=4365.000000
s hg38.chr6_GL000254v2_alt   651734 3 +   4827813 GTC
s panTro5.chr6             29623760 3 + 175400573 GTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29861977 3 + 173848474 GTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5664892 3 +   6154872 GTC
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     284464 3 +    766320 GTC
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     268711 3 -    352859 gtc
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570741           533270 3091 +   1532071 I
e proCoq1.NW_012152574v1     395505 4558 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2062549 1305 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e chlSab2.chr17            28786671 0 -  71996105 C
e macNem1.NW_012011356v1    2531805 852 -   2996164 I
e macFas5.chr4             29545393 853 - 170955103 I
e rheMac8.chr4             29882419 865 + 172585720 I

a score=1000.000000
s hg38.chr6_GL000254v2_alt   651737 1 +   4827813 C
s panTro5.chr6             29623763 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29861980 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5664895 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     284467 1 +    766320 C
i cerAty1.NW_012002711v1   C 0 I 4756
e dasNov3.JH570741           533270 3091 +   1532071 I
e proCoq1.NW_012152574v1     395505 4558 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2062549 1305 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     268714 0 -    352859 C
e chlSab2.chr17            28786671 0 -  71996105 C
e macNem1.NW_012011356v1    2531805 852 -   2996164 I
e macFas5.chr4             29545393 853 - 170955103 I
e rheMac8.chr4             29882419 865 + 172585720 I

a score=163983.000000
s hg38.chr6_GL000254v2_alt   651738 301 +   4827813 -------------------Cttttttttttttttttttttgagacagagtctcgctctatcgcccaggctggagtgcagtggtgcgatcttggctcactgcaagctccgccttcccggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccaccaccacgcccggctaattttttgtgtttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgaccttgtgatctgccctcctcggcctcccaaagtgccgggattacaggcgtaagccactgtgcctggc
s panTro5.chr6             29623764 311 + 175400573 ---------tttttttttttttttttttttttttttttttgagacagagtcttgctctatcgcccaggctggagtgcagtggtgcgatctcggctcactgctagctccgccttcccggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccaccaccacgcccggctaattttttgtgtttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgaccttgtgatctgccctcctcggcctcccaaagtgccgggattacaggcgtaagccactgtgcctggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29861981 299 + 173848474 ---------------------tttttttttttttttttttgagacagagtcttgctctatcgcccaggctggagtgcagtggtgcgatctcggctcactgctagctccgccttcccggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccaccaccacgcccggctaattttttgtgtttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgaccttgtgatctgccctcctcggcctcccaaagtgccgggattacaggcgtaagccactgtgcctggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5664896 319 +   6154872 ttttttttttttttttttttttttttttttttttttttttgagacagagtctcgctctatcgcccaggctggagtgcagtggtgcgatctcggctcactgcaagctccgccttcccggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccaccaccacgcccggctaattttttgtg-ttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgacattgtgatctgccctcctcggcctcccaaagttccgggattacaggcgtgagccaccgtgactggc
i gorGor5.CYUI01015250v1   C 0 C 0
e dasNov3.JH570741           533270 3091 +   1532071 I
e proCoq1.NW_012152574v1     395505 4558 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2062549 1305 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     268714   0 -    352859 C
e chlSab2.chr17            28786671   0 -  71996105 C
e cerAty1.NW_012002711v1     284468 4756 +    766320 I
e macNem1.NW_012011356v1    2531805 852 -   2996164 I
e macFas5.chr4             29545393 853 - 170955103 I
e rheMac8.chr4             29882419 865 + 172585720 I

a score=3898.000000
s hg38.chr6_GL000254v2_alt   652039 5 +   4827813 cTCCC
s panTro5.chr6             29624075 5 + 175400573 cTCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29862280 5 + 173848474 cTCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5665215 5 +   6154872 cTCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29546246 5 - 170955103 CCCCT
i macFas5.chr4             I 853 C 0
e dasNov3.JH570741           533270 3091 +   1532071 I
e proCoq1.NW_012152574v1     395505 4558 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2062549 1305 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     268714 0 -    352859 C
e chlSab2.chr17            28786671 0 -  71996105 C
e cerAty1.NW_012002711v1     284468 4756 +    766320 I
e macNem1.NW_012011356v1    2531805 852 -   2996164 I
e rheMac8.chr4             29882419 865 + 172585720 I

a score=3279.000000
s hg38.chr6_GL000254v2_alt   652044 2 +   4827813 GT
s panTro5.chr6             29624080 2 + 175400573 GT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29862285 2 + 173848474 GT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5665220 2 +   6154872 GT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29546251 2 - 170955103 GC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     289224 2 +    766320 gt
i cerAty1.NW_012002711v1   I 4756 C 0
s chlSab2.chr17            28786671 2 -  71996105 GT
i chlSab2.chr17            C 0 C 0
e dasNov3.JH570741           533270 3091 +   1532071 I
e proCoq1.NW_012152574v1     395505 4558 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2062549 1305 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     268714 0 -    352859 C
e macNem1.NW_012011356v1    2531805 852 -   2996164 I
e rheMac8.chr4             29882419 865 + 172585720 I

a score=2800.000000
s hg38.chr6_GL000254v2_alt   652046 1 +   4827813 C
s panTro5.chr6             29624082 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29862287 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5665222 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29546253 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2532657 1 -   2996164 c
i macNem1.NW_012011356v1   I 852 C 0
s cerAty1.NW_012002711v1     289226 1 +    766320 c
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28786673 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
e dasNov3.JH570741           533270 3091 +   1532071 I
e proCoq1.NW_012152574v1     395505 4558 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2062549 1305 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e manLeu1.NW_012099655v1     268714 0 -    352859 C
e rheMac8.chr4             29882419 865 + 172585720 I

a score=196647.000000
s hg38.chr6_GL000254v2_alt   652047 60 +   4827813 CTTTAATGTAAGAAAATATCTATTTATCCTTTGGGTTTCAGCCTATCTCAAATTAAGTTA
s panTro5.chr6             29624083 60 + 175400573 CTTTAATGTAAGAAAATATCTATTTATCCTTTGGGTTTCAGCCTATCTCAAATTAAGTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29862288 60 + 173848474 CTTTAATGTAAGAAAATATCTATTTATCCTTTGGGTTTCAGCCTATCTCAAATTAAGTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5665223 60 +   6154872 CTTTAATGTAAGAAAATATCTATTTATCCTTTGGGTTTCAGCCTATCTCAAATTAAGTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29546254 60 - 170955103 CTTTAATGTAAGAAAATATCTATTTATCCTTTGGGTTTCAGCCTGTCTCAAATTAAGTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2532658 60 -   2996164 ctttaatgtaagaaaatatctatttatcctttgggtttcagcCTGTCTCAAATTAAGTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     289227 60 +    766320 ctttaatgtaagaaaatatctatttatcctttgggtttcagcCTGTCTCAAGTTAAGTTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28786674 60 -  71996105 CTTTAATGTAAGAAAATATCTATTTATCCTTTGGGTTTCAGCCTGTTTCAAATTAAGTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     268714 60 -    352859 ctttaatgtaagaaaatatctatttatcctttgggtttcagcCTGTCTCAAGTTAAGTTA
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570741           533270 3091 +   1532071 I
e proCoq1.NW_012152574v1     395505 4558 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2062549 1305 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e rheMac8.chr4             29882419 865 + 172585720 I

a score=5018945.000000
s hg38.chr6_GL000254v2_alt   652107 1287 +   4827813 GACCCTAttacgatacccttctataggtttctgtacttccatttgtctgataatcattattatccttcttcagctactttctcctatcattaaactctagatttattactcattactcactagtcattaataacttcaacccttcatgatctcagtaataagcatcctagactccaactaccaccaggtaaattcataatttactctctccaataccacaaatcctataatctttatcccctaaattatagttattctatttcatgttctttactactctcatgtactcacactcctccttactcatcttaagttccatatgcatatttatagtcactttatagtagcatatatccttacatcccttgaccaatttgtgcttcatgtctttacctggaaaaagtcaaaccactctctacttactccacatctaaacctttgcagctgaacacgattggaggaaaatgcacctgtgctcacttgcctagatctaaattcatTAATACTCAACTGCATTGAAATCTTGGGAATGCCATTgactcagccaccaggcccacccacctgatgaccc-aagcactaagccatcctgcccaggactccaggaacaaacctacttccagaccacgccatatgacctgcccagaatctctggataggctgatgcatgaagggcgttccctgccgaaacagtctgtaaagactggaatatatgcctatttcttcagatgcacagacaccaacgcatgaccacaaggatcatgagcaat----aaaaaaaacCCCTGAAATCTTAGAGATGCCAATCAAttacatatttccctttctctttacaggccatacctctaactcttctctctcatcctctctctcggagagtgacattgtttcttttattttggaaaagtaaaggcagtcagaagagagtatctccaagtttcatcctagtatctacccacagttttgtaactgtgttcatatactgtgcattcactctgtttctaatggtttcataattgatactcctgatgaagaccacctcttccacctgtgtccaagaacccattctctctcatcttctaagaacactgctccagttattttctcatctctgtcttaaatcatgaacattttcctctcctgtactacctttctacctccattccatttctgtgttcccctttacaattaaattctgtaaacatttgcctataccagctgtttgcaatcctctttccattccctcctacacctataccaattaaaattttaccctcactcttctaccaaaatt
s panTro5.chr6             29624143 1287 + 175400573 GACCCTATTATGatacccttctataggtttctgtacttccatttgtctgataatcattattatccttcttcagctactttctcctatcattaaactctagatttattactcattactcactagtcattaataatttcaacccttcatgatctcagtaataagcatcctagactccaactaccaccaggtaaattcataatttactctctccaataccacaaatcctataatctttatcccctaaattacagttattctatttcatgttctttactactctcatgtactcacactcctccttactcatcttaagttccatatgcatatttatagtcactttatagtagcatatatccttacatcccttgaccaatttgtgcttcatgtctttacctggaaaaagtcaaaccactctctacttactccgcatctaaacatttgcagctgaacacgattggaggaaaatgcacctgtgctcacttgcctagatctaaattcatTAATACTCAACTGCATTGAAATCTTGGGAATGCCATTgactcagccaccaggcccacccacctgatgaccc-aagcactaagccatcctgcccaggactccaggaacaaacctacttccagaccacgccatatgacctgcccagaatctctggataggctgatgcatgaagggcgttccctgccgaaacagtctgtaaagactggaatatatgcctatttcttcagatgcacagacaccaacgcatgaccacaaggatcatgagcaat----aaaaaaaaACCCTGAAATCTTAGAGATGCCAATCAattacatatttccctttctctttacagcccatacctctaactcttctctctcatcctctctctcggagagtgacattgtttcttttattttggaaaagtaaaggcagtcagaagagagtatctccaagtttcatcctagtatctacccacagttttgtaactgtgttcatatactgtgcattcactctgtttctaatggtttcataattgatactcctgatgaagaccacctcttccacctgtgtccaagagcccattctctctcatcttctaagaacactgctccagttattttctcatctctgtcttaaatcatgaaaattttcctctcctgtactgcctttctacctccattccatttctgtgttcccctttacaattaaattctgtaaacatttgcctataccagctgtttgcaatactctttccattccctcctacacctataccaattaaaattttaccctcactcttctaccaaaatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29862348 1287 + 173848474 GACCCTATTATGatacccttctataggtttctgtacttccatttgtctgataatcattattatccttcttcagctactttctcctatcattaaactctagatttattactcattactcactagtcattaataatttcaacccttcatgatctcagtaataagcatcctagactccaactaccaccaggtaaattcataatttactctctccaataccacaaatcctataatctttatcccctaaattacagttattctatttcatgttctttactactctcatgtactcacactcctccttactcatcttaagttccatatgcatatgtatagtcactttatagtagcatatatccttacatcccttgaccaatttgtgcttcatgtctttacctggaaaaagtcaaaccactctctacttactccgcatctaaacatttgcagctgaacacgattggaggaaaatgcacctgtgctcacttgcctagatctaaattcatTAATACTCAACTGCATTGAAATCTTGGGAATGCCATTgactcagccaccaggcccacccacctgatgaccc-aagcactaagccatcctgcccaggactccaggaacaaacctacttccagaccacgccatatgacctgcccagaatctctggataggctgatgcatgaagggcgttccctgccgaaacagtctgtaaagactggaatatatgcctatttcttcagatgcacagacaccaacgcatgaccacaaggatcatgagcaat----taaaaaaacCCCTGAAATCTTAGAGATGCCAATCAattacatatttccctttctctttacagcccatacctctaactcttctctctcatcctctctctcagagagtggcattgtttcttttattttggaaaagtaaaggcagtcagaagagagtatctccaagtttcatcctagtatctacccacagttttgtaactgtgttcatatactgtgcattcactctgtttctaatggtttcataattgatactcctgatgaagaccacctcttccacctgtgtccaagagcccattctctctcatcttctaagaacactgctccagttattttctcatctctgtcttaaatcatgaaaattttcctctcctgtactgcctttctacctccattccatttctgtgttctcctttacaattaaattctgtaaacatttgcctataccagctgtttgcaatcctctttccattccctcctacacctataccaattaaaattttaccctcactcttctaccaaaatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5665283 1287 +   6154872 GACCCTATTATGatacccttctataggtttctgtacttccatttgtctgataatcattattatccttcttcagctactttctcctatcattaaactctagatttattactcattactcactagtcattaataacttcaacccttcatgatctcagtaataagcatcctagactccaactaccaccaggtaaattcataatttactctctccaataccacaaatcctatcatctttatcccctaaattacagttattctatttcatgttctttactactctcatgtactcacactcctccttactcatcttaagttccatatgcatatttatagtcactttatagtagcatatatccttacatcccttgaccaa-ttgtgcttcatgtctttacctggaaaaagtcaaaccactctccacttactccgcatctaaacatttgcagctgaacacgattggaggaaaatgcacctatgctcacttgcctagatctaaattcatTAATACTCAACTGCACTGAAATCTTGGGAATGCCATTgactcagccaccaggcccacccacctgatgacccaaagcactaagccatcctgcccaggactccaggaacaaacctacttccagaccatgccatatgacctgcccagaatctctggataggctgatgcatgaagggcgttccctgccgaaacagtctgtaaagactggaatatatgcctatttcttcagatgcacagacaccaacgcatgaccacaaggatcatgagcaat----aaaaaaaaACCCTGAAATCTTAGAGATGCCAATCAattacatatttccctttctctttacagcccatacctctaactcttctctctcatcctctctctcggagagtgacattgtttcttttattttggaaaagtaaaggcagtcagaagagagtatctccaagtttcatcctagtatctacccacagttttgtaactgtgttcacatactgtgcatccactgtgtttctaatggtttcataattgatactcctgaggaagaccacctcttccacctgtgtccaagagcccattctctctcatcttctaagaacactgctccagttattttctcatctctgtcttaaatcatgaaaattttcctctcctctactacctttctacctccattccatttctgtgttcccctttacaattaaattctgtaagcatttgcctataccagctgtttgcaatcctctttccattccctcctacacctataccaattaaaattttaccctcactcttctaccaaaatt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29883284 1285 + 172585720 gaccctattattatacccttctataggtttctgtacttccatttgtctgataatcattattatccttcttcagctactttcttctatcattaaaccctagatttattactcattactcaatagtcattaatagcttcaacccttcataatctcagtaataatcatcctagactccaactaccaccagctaaattcataatttactctctccaataccacaaatcctatcatcttcatcctctaaattgcagttattctatttcatgttctttaatactctcatgtactcacactcctccttacccatcttaagttccatatgcatatttacagtcactttatagtagcatatatccttacatcccttgaccaatttgtgcttcctatctttacctggaaaaagtcaaaccactctctacttactctgcatctaaatatttgcagct-aacatgattggaggaaaatgcactgatgctcacttgtctagatctaaattcatTGATACTCAGCTGCATTGAAATCTTGGGAATGCCACTgactcagccaccaggcccacccacctaatgaccc-aagtactaaaccatcctgcccaggactccgggaacaaacctacctccagaccacgccatatgacctgcccagaatctctggatagtctgattcatgaagggcattccctgccgaaatagtctgtaaagactagaatatatgcctatttcttcaaatgcacagacaccaacacgtggccacaaggatcataagcaat---taaaaaaataCCCTGAAATCTTAGAGATACAAATCAattacatatttccctttctctttacagcccatacctctaactcttctctctcatc--ctctctcggagaatgacgttgtttcttttattttggaatagtaaaagcagtcagaagagaatatctccaagtttcatcctagtatctacccacagttttgtaactatgctcatatactgtgcattcactgtgtttctaatggcttcataattgagactcctgatgaacaccacctctttcacttgtgtccaagagtccattctctctcatcttctaagaatattgctccagttattttctcatctctgtcttaaatcatgaacattttcctctcctctactagctgtctatctctgttccatttctgtgctcccctttacaattaaattctgtaaacatttgcctatacatgctgttcgcaattctctttccattctctcctacacctacaccaattaaaattttaccctcactattctaccaaaatt
i rheMac8.chr4             I 865 C 0
s macFas5.chr4             29546314 1285 - 170955103 GACCCTATTATGatacccttctataggtttctgtacttccatttgtctgataatcattattatccttcttcagctactttcttctatcattaaaccctagatttattactcattactcaataatcattaataacttcaacccttcataatctcagtaataatcatcctagactccaactaccaccagctaaattcataatttactctctccaataccacaaatcctatcatcttcatcctctaaattgcagttattctatttcatgttctttaatactctcatgtactcacactcctccttacccatcttaagttccatatgcatatttacagtcactttatagtagcatatatccttacatcccttgaccaatttgtgcttcctatctttacctggaaaaagtcaaaccactctctacttactctgcatctaaatatttgcagct-aacatgattggaggaaaatgcactgatgctcacttgtctagatctaaattcatTGATACTCAGCTGCATTGAAATCTTGGGAATGCCACTgactcagccaccaggcccacccacctaatgaccc-aagtactaaaccatcctgcccaggactccgggaacaaacctacctccagaccacgccatatgacctgcccagaatctctggatagtctgattcatgaagggcattccctgccgaaatagtctgtaaagactagaatatatgcctatttcttcaaatgcacagacaccaacacgtgaccacaaggatcataagcaat---taaaaaaataCCCTGAAATCTTAGAGATACAAATCAattacatatttccctttctctttacagcccatacctctaactcttctctctcatc--ctctctcggagaatgacattgtttcttttattttggaatagtaaaagcagtcagaagagaatatctccaagtttcatcctagtatctacccacagttttgtaactatgctcatatactgtgcattcactgtgtttctaatggcttcataattgagactcctgatgaacaccacctctttcacttgtgtccaagagtccattctctctcatcttctaagaatattgctccagttattttctcatctctgtcttaaatcatgaacattttcctctcctctactagctgtctatctctgttccatttctgtgctcccctttacaattaaattctgtaaacatttgcctatacatgctgttcgcaattctctttccattctctcctacacctacaccaattaaaattttaccctcactattctaccaaaatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2532718 1284 -   2996164 GACCCTATTATGatacccttctataggtttctgtacttccatttgtctgataatcattattatccttcttcagctactttcttctatcattaaaccctagatttattactcattactcaatagtcattaataacttcaacccttcataatctcagtaataatcatcctagactccaactaccaccagctaaattcataatttactctctccaataccacaaatcctatcatcttcatcctctaaattgcagttattctatttcatgttctttaatactctcatgtactcacactcctccttacccatcttaagttccatatgcatatttacagtcactttatagtagcatatatccttacatcccttgaccaatttgtgcttcctatctttacctggaaaaagtcaaaccactctctacttactctgcatctaaatatttgcagct-aacatgattggaggaaaatgcactgatgctcacttgtctagatctaaattcatTGATACTCAGCTGCATTGAAATCTTGGGAATGCCACTgactcagccaccaggcccacccacctaatgaccc-aagtactaaaccatcctgcccaggactccgggaacaaacctacctccagaccacgtcatatgacctgcccagaatctctggatagtctgattcatgaagggtattccctgccgaaatagtctgtaaagactagaatatatgcctatttcttcaaatgcacagacaccaacacgtgaccacaaggatcataagcaat---taaaaaaataCCCTGAAATCTTAGAGATACAAATCAattacatatttccctttctctttacagcccatacctctaactcttctctcttatc--ctctctcagagaatgacattg-ttcttttattttggaatagtaaaagcagtcagaagagaatatctccaagtttcatcctagtatctacccacagttttgtaactatgctcatatactgtgcattcactgtgtttctaatggcttcataattgagactcctgatgaacaccacctctttcacttgtgtccaagagtccattctctctcatcttctaagaatattgctccagttattttctcatctctgtcttaaatcatgaaaattttcctctcctctactagctgtctatctctgttccatttctgtgctcccctttacaattaaattctgtaaacatttgcctatacatgctgttcgcaattctctttccattctctcctacacctacaccaattaaaattttaccctcactattctaccaaaatt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     289287 1287 +    766320 GACCCTATTATGatacccttctataggtttctgtacttccatttgtctggtaatcattattatccttcttcagctactttctcctatcattaaaccctagatttattactcattactcaacagtcattaataacttcaacccttcataatctcagtaataagcatcctagactccaactaccaccagctaaatttctaatttactctctccaataccacaaatcctataatcttcatcctctaaattgcagttattctatttcatgttctttaatactctcatgtactcaccctcctccttacccaccttaagttccatatgcatatttacagtcactttatagtagcatatatccttacatcccttgaccaatttgtgcttcatgtctttacctggaaaaagtcaaaccactctctacttcctctgcatctaaatatttgcagctgaacatgattggaggaaaatgcacctatgctcacttgtctagatctaaattcaCTGATACTCAACTGCATTGAAATCTTGGGAATACCACTgactcaaccacctggcccacccacctaatgaccc-aagtactaagccatcctgcccaggactccaggaacaaacctacctccagaccacgctgtatgacctgcccagaatctctggataggctgatgcgtgaagggcgtgccctgccgaaatagtctgtaaagactggaatatatgcctatttcttcaaatgcacagacaccaacacatgaccacagggatcataagcaat--aaaaaaaaAAACCCTGAAATCTTAGAGATACCAATCAattacatatttccctttctctttacagcccataactctaactcttctctctcatc--ctctctcggagaatgacattgtttcttttattttggaatagtaaaagcagtcagaagagaatgtctccaagtttcatcctagtatctacccacagttttgtaactatgctcatatactgtgcattcactgtgtttctaatggcttcataattgagactcctgatgaagacctcctctttcacttgtgtccaagagtccattctctctcatcttctaagaatattgctccagttattttctcatctctgtcttaaatcatgaaaattttcttctcctctactacctgtctatctctgctccatttctgtgctcccttttacaattaaattctgtaaacatttgcctatacatgctgttcgcaattctctttccattctctcctacacttacaccaattaaaattttaccctcactattctaccaaaatt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28786734 1289 -  71996105 GACCCTATTATGatacccttctataggtttctgtacctccatttgtctaataatcattattatccttcttcagctactttcttctatcattaaaccctagatttattactcattactcaatagtcattaataacttcaaccgttcataatctcagtaataatcatcctagactccaactaccaccagctaaattcataatttactctctccaataccacaaatcctatcatcttcatcctctaaattgcagttattctatttcatgttctttaatactctcatgtactcacactcctccttacccatcttaagttccatatgcatatttacagtcattttatagtagcatatatccttatgtcccttgaccaatttgtgcttcatgtctttacctggaaaaagtcaaaccactctctacttactctgcatctaaatatttgcagctgaacatgattggaggaaaatgcacctatgctcacttgtctagatctaaattcCTTAATACTCAACTGCATTGAAATCTTGGGAATGCCACTgactcagccaccaggcccacccacctaatgaccc-aagtactaaaccatcctgcccaggactccaggaacaaacctaccgccagaccatgccatatgacctgcccagaatctctggataggctgatgcgtgaagggcattccctgtggaactagtctgtaaagactggaatatatgcctatttcttcaaatgcacagacaccaacacatgaccacaaggatcataagcaataaaaaaaaAAAAAACCTGAAATCTTAGAGATACCAATCAattacatatttccctttctctttacagcccatacctctaactcttctctctcatc--ctctctcggagaatgacattgtttcttttattttggaatagtaaaagcagtcagaagagaatatctccaagtttcatcctagtatctacccacagttttgtaactgcgatcatatactgtgcattcactgtgtttctaatggtttcataattgagactcctgatgaagaccacctctttcacttgtgtccaagagtccattctctctcatcttctaagaatattgctccatttattttctcatctctgtcttaaatcatgaaaattttcctctcctctactacctgtctatcactgttccatttctgtgctcccctttacaattaaattctgtaaacatttgcctatacatgctgttcgcaattctctttccgttctctcctacacctacaccaattaaaattttaccctcactgttctaccaaaatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     268774 1285 -    352859 GACCCTATTATGatacccttctataggtttctgtacttccatttgtctggtaatcattattatccttcttcagctactttctcctatcattaaaccctaaatttattactcattactcaacagtcattaataacttcaacccttcataatctcagtaataagcatcctagactccaactaccaccagctaaatttctaatttactctctccaataccacaaatcctataatcttcatcctgtaaattgcagttattctatttcatgttctttaatactctcatgtactcaccctcctccttacccaccttaagttccatatgcatatttacagtcactttatagtagcatatatccttacatcccttgaccaatttgtgcttcatgtctttacctggaaaaagtcaaaccactctctacttcctctgcatctaaatatttgcagctgaacatgattggaggaaaatgcacctatgctcacttgtctagatctaaattcactgacACTCAACTGCATTGAAATCTTGGGAATACCACTgactcaactacctggcccacccacctaatgaccc-aagtactaagccatcctgcccaggactccaggaacaaacctacctccagaccacgctgtatgacctgcccagaatctctggataagctgatgcgtgaagggcgtgccctgccgaaatagtctgtaaagactggaatatatgcctatttcttcaaatgcacagacaccaacacatgaccacagggatcataagcaat----taaaaaaaACCCTGAAATCTTAGAGATACCAATCAattacatatttccctttctctttacagcccatacctctaactcttctctctcatc--ctctctcggagaatgactttgtttcttttattttggaatagtaaaagcagtcagaagagaatgtctccaagtttcatcctagtatctacccacagttttgtaactatgctcatatactgtgcactcactgtgtttctaatggcttcataattgagactcctgatgaagacctcctctttcacttgtgtccaagagtccattctctctcatcttctaagaatattgctccagttattttctcatctctgtcttaaatcatgaaaattttcttctcctctactacctgtctatctctgttccatttctgtgctcccttttacaattaaattctgtaaacatttgcctatacatgctgttcgcaattctctttccattctctcctacacttacaccaattaaaattttaccctcactgttctaccaaaatt
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH570741           533270 3091 +   1532071 I
e proCoq1.NW_012152574v1     395505 4558 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2062549 1305 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=134596.000000
s hg38.chr6_GL000254v2_alt   653394 36 +   4827813 tcttttataaacaacaccaataacaattacattaac---
s panTro5.chr6             29625430 36 + 175400573 tcttttataaacaacaccaataacaattacattaac---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29863635 36 + 173848474 tcttttataaacaacaccaataacaattacattaac---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5666570 36 +   6154872 tcttttataaacaacaccaataaaaattacattaac---
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29884569 36 + 172585720 tattttataaacaacaccaacaacaattgcattaac---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29547599 36 - 170955103 tattttataaacaacaccaacaacaattgcattaac---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2534002 36 -   2996164 tattttataaacaacaccaacaacaattgcattaac---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     290574 36 +    766320 tattttataaacaacaccaataacAATTGCATTAAC---
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28788023 36 -  71996105 tatcttataaacaacaccaataacaattgcattaac---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     270059 36 -    352859 tattttataaacaacaccaataacaattgcattaac---
i manLeu1.NW_012099655v1   C 0 C 0
s dasNov3.JH570741           536361 39 +   1532071 TCATTTTTAAGCACCCCAATCTATAATCCAGATGATAAA
i dasNov3.JH570741         I 3091 C 0
e proCoq1.NW_012152574v1     395505 4558 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2062549 1305 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=58564.000000
s hg38.chr6_GL000254v2_alt   653430 14 +   4827813 aaatcAGAAAATGA
s panTro5.chr6             29625466 14 + 175400573 aaatcaaaaaatga
i panTro5.chr6             C 0 I 1415
s panPan2.chr6             29863671 14 + 173848474 aaatcaaaaaatga
i panPan2.chr6             C 0 I 1414
s gorGor5.CYUI01015250v1    5666606 14 +   6154872 aaatcaaaaaatga
i gorGor5.CYUI01015250v1   C 0 I 1409
s rheMac8.chr4             29884605 14 + 172585720 aaatcaaaaaatga
i rheMac8.chr4             C 0 I 1415
s macFas5.chr4             29547635 14 - 170955103 aaatcaaaaaatga
i macFas5.chr4             C 0 I 2042
s macNem1.NW_012011356v1    2534038 14 -   2996164 aaatcaaaaaatga
i macNem1.NW_012011356v1   C 0 I 1419
s cerAty1.NW_012002711v1     290610 14 +    766320 AAATCAAAAAATGA
i cerAty1.NW_012002711v1   C 0 I 864
s chlSab2.chr17            28788059 14 -  71996105 aaatcaaaaaatga
i chlSab2.chr17            C 0 I 1424
s manLeu1.NW_012099655v1     270095 14 -    352859 aaatcaaaaaatga
i manLeu1.NW_012099655v1   C 0 I 1420
s otoGar3.GL873742          2063854 11 -   2232465 AACTCAGAAAG---
i otoGar3.GL873742         I 1305 C 0
s dasNov3.JH570741           536400 11 +   1532071 AACTCACAAAG---
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     395505 4558 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=224447.000000
s hg38.chr6_GL000254v2_alt   653444 48 +   4827813 AGATTCCTCCATTTTTATCAAAGGACATGGCAACACAGAACATAAACA
s panTro5.chr6             29626895 48 + 175400573 AGATTCCTCCATTTTTATCAAAGGACATGGCAACACAGAACATAAACA
i panTro5.chr6             I 1415 C 0
s panPan2.chr6             29865099 48 + 173848474 AGATTCCTCCATTCTTATCAAAGGACATGGCAACACAGAACATAAACA
i panPan2.chr6             I 1414 C 0
s gorGor5.CYUI01015250v1    5668029 48 +   6154872 AGATTCCTCCATTTTTATCAAAGGACATGGCAACACAGAACGTAAACA
i gorGor5.CYUI01015250v1   I 1409 C 0
s rheMac8.chr4             29886034 48 + 172585720 AGATTCCCCCACTTTTGTCAGAGGACATGGCAACACAGAAAGTAAACA
i rheMac8.chr4             I 1415 I 1
s macFas5.chr4             29549691 48 - 170955103 AGATTCCCCCACTTTTGTCAGAGGACATGGCAACACAGAAAGTAAACA
i macFas5.chr4             I 2042 I 1
s macNem1.NW_012011356v1    2535471 48 -   2996164 AGATTCCTCCACTTTTGTCAGAGGACATGGCAACACAGAAAGTAAACA
i macNem1.NW_012011356v1   I 1419 I 1
s cerAty1.NW_012002711v1     291488 48 +    766320 AGATTCTCCCACTTTTGTCAGAGGACACGGCAACACAGAAAGTAAACA
i cerAty1.NW_012002711v1   I 864 I 9579
s chlSab2.chr17            28789497 48 -  71996105 AGATTCCCCCACTTTTGTCAGAGGACATGGCAACACAGAAAGTAAACA
i chlSab2.chr17            I 1424 I 1
s manLeu1.NW_012099655v1     271529 48 -    352859 AGATTCTCCCACTTTTGTCAGAGGACACGGCAACACAGAAAGTAAACA
i manLeu1.NW_012099655v1   I 1420 I 1
s otoGar3.GL873742          2063865 43 -   2232465 -GACCCTCCCACTTTTATCAGTGGGCATGGCAACATAGAAAGCA----
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           536411 47 +   1532071 -GACTCCCACACATTTATCAGAGTGCATGGTAGGAGAGAAAGTGAGCA
i dasNov3.JH570741         C 0 I 1
e proCoq1.NW_012152574v1     395505 4558 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=229623.000000
s hg38.chr6_GL000254v2_alt   653492 54 +   4827813 TGTATATTTGTAGAAAAAGT-AATGGTTTTTAGCCA-ATAGGTACAGGTTTTTCCA
s panTro5.chr6             29626943 54 + 175400573 TGTATATTTGTAGAAAAAGT-AATGGTTTTTAGCCA-ATAGGTACAGGTTTTTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29865147 54 + 173848474 TGTATATTTGTAGAAAAAGT-AATGGTTTTTAGCCA-ATAGGTACAGGTTTTTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5668077 54 +   6154872 TGTATATTTGTAGAAAAAGT-AATGGTTTTTAGCCA-ATAGGTACAGGTTTTTCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29886083 54 + 172585720 TGTATATTTGTAGAAAAAAT-AATTGTTTTTAGCCA-ATAGGTACAGGTTTTTCCA
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29549740 54 - 170955103 TGTATATTTGTAGAAAAAAT-AATTGTTTTTAGCCA-ATAGGTACAGGTTTTTCCA
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2535520 54 -   2996164 TGTATATTTGTAGAAAAAAT-AATTGTTTTTAGCCA-ATAGGTACAGGTTTTTCCA
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1     301115 54 +    766320 TGTATATTTGTAGAAAAAAT-AATGGTTTTTAGCCA-ATAGGTACAGGTTTTTCCA
i cerAty1.NW_012002711v1   I 9579 C 0
s chlSab2.chr17            28789546 53 -  71996105 TGTATATTTGTAGAAAAAAT-AATGG-TTTTAGCCA-ATAGCTACAGGTTTTTCCA
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012099655v1     271578 54 -    352859 TGTATATTTGTAGAAAAAAG-AATGGTTTTTAGCCA-ATAGGTACAGGTTTATCCA
i manLeu1.NW_012099655v1   I 1 C 0
s otoGar3.GL873742          2063908 49 -   2232465 --TATATTTGTGGGTTAAG----TGGGTATTGACCATATAAGGACA-GTTACTCCA
i otoGar3.GL873742         C 0 I 1
s dasNov3.JH570741           536459 55 +   1532071 TGTTTATTTGTAGATTAAGTAAATGGTTTTTGGCCA-TACAGTGCAATTGCTTTAG
i dasNov3.JH570741         I 1 C 0
e proCoq1.NW_012152574v1     395505 4558 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=800111.000000
s hg38.chr6_GL000254v2_alt   653546 145 +   4827813 CAATTCATTTTTGGCATGACCTGCTCTCAATGGCATTAATAATTCTTATTGATTAATTAGCATCAGTAAGTAGTATTGAATATTTA----ATTATAAGATTGGTGAATTGACACAAAAACCTAGGAGCTGTATTCCGTGGGTATAGATA
s panTro5.chr6             29626997 145 + 175400573 CAATTCATTTTTGGCATGACCTGCTCTCAATGGCATTAATAATTCTTATTGATTAATTAGCATCAGTAAGTAGTATTGAATATTTA----ATTATAAGATTGGTGAATTGACACAAAAACCTAGGAGCTGTATTCCATGGGTATAGATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29865201 145 + 173848474 CAATTCATTTTTGGCATGACCTGCTCTCAATGGCATTAATAATTCTTATTGATTAATTAGCATCAGTAAGTAGTATTGAATATTTA----ATTATAAGATTGGTGAATTGACACAAAAACCTAGGAGCTGTATTCCATGGGTATAGATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5668131 145 +   6154872 CAATTCATTTTTGGCTTGACCTGCTCTCAATGGCATTAATAATTCTTATTGATTAATTAGCATCAGTAAGTAGTATTGAAAATTTA----GTTATAAGATTGGTGAATTGACACAAAAACCTAGGAGCTGTATTCCATGGGTATAGATA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29886137 145 + 172585720 CAATTCATTTTTGGTATGACCTGCTCTCAATGGCATTAATAATTCTTATTGATTAATTAGCATCAGTATATAGTATTAAAAATTTA----ATCATAAGATTGGCGAATTGACACAAAAAGTGAGGAGCTGCATTCCATGGGTATAGATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29549794 145 - 170955103 CAATTCATTTTTGGTATGACCTGCTCTCAATGGCATTAATAATTCTTATTGATTAATTAGCATCAGTATATAGTATTAAGAATTTA----ATCATAAGATTGGCGAATTGACACAAAAAGTGAGGAGCTGCATTCCATGGGTATAGATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2535574 145 -   2996164 CAATTCATTTTTGGTATGACCTGCTCTCAATGGCATTAATAATTCTTATTGATTAATTAGCATCAGTATATAGTATTAAAAATTTA----ATCATAAGATTGGTGAATTGACACAAAAAGTGAGGAGCTGCATTCCATGGGTATAGATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     301169 145 +    766320 CAATTCATTTTTGGCATGACCTGCTCTCAATGGCATTAATAATTCTTATTGATTAATTAGCATCAGTGTATAGTATTAAAAATTTA----ATCATAAGATTGGTGAATTGACACAAAAAGTGAGGAGCTGCATTCCATGGGTATAGATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28789599 145 -  71996105 CAATTCATTTTTGGCATGACCTGCTCTCAATGGCATTAATAATTCTTATTGATTAATTAGCATCAGTATATAGTATTAAAAATTTA----ATCATAAGATTGGTGAATTGACACAAAAAGTGAAGAGCTGCATTCCATGGATATAGATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     271632 145 -    352859 CAATTCATTTTTGGCATGACCTGCTCTCAATGGCATTAATAATTCTTATTGATTAATTAGCATCAGTGTATAGTATTAAAAATTTA----ATCATAAGATTGGTGAATTGACACAAAAAGTGAGGAGCTGCATTCCATGGGTATAGATA
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     400063 144 +    730504 CAATTCATTTTTGGCATGACCTACTCTCATTGACACTAATGATTCTCAATTATTAATTAGCACCAGCAAATAGTATTTA-CATTTA----ATTATATAATCAGTGTCTTGACACAGAAGGCTAGGAGCTGTATTCCATGGATGTTGATA
i proCoq1.NW_012152574v1   I 4558 C 0
s otoGar3.GL873742          2063958 143 -   2232465 CAATTAA-TTTGGGCATGGCCTGATCTAAATGACACTAATGATTCTTACTGAGTAATTACCATCAGTGAAAAGTATTTA-CATTTA----ACTACATAATTGTTGACTAGACATAAAAGGCTAAGAGCTCCATCCCATCAATATGGATA
i otoGar3.GL873742         I 1 I 694
s dasNov3.JH570741           536514 143 +   1532071 TAATTCTTTTTTGGCATG-----TTCTTCATGTCACTAATGATTCTTAATAATTTATCAGCATCAGTAAGTAGTATTTAATATTTAAGTGATTATATGATTGGTGA-TGGAAAAATAAGGCTAGGAGCTTCATTCCATGGAAATGGATA
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=1607801.000000
s hg38.chr6_GL000254v2_alt   653691 295 +   4827813 CAGAATAAATGTTCAAAGTGAAATTATTGATAGTGGAGAGAAGAGAATTAATTTCAGGAATCATAAACATAGCTGAAGGACATTGTAACGGATGCATATAATTAAGGGTTTGGGATGTACGCTTGTGAAACTACATAAGTAAATACTTTATACAACAGTTTCGAAATTATTT-------TTTCCTAAATAATTAACACCATCCCTCTTCTACTAAAA-AT------AATACTACTGCAAAGTTATATAATTATCTAACATTAAATACAATCTAATATAT----TATCTAACAC---GAATTGGAATCTGCTACTTT
s panTro5.chr6             29627142 295 + 175400573 CAGAATAAATGTTCAAAGTGAAATTATTGATAGTGGAGAGAAGAGAATTAATTTCAGGAATCATAAACATAGCTGAAGGACATTGTAATGGATGCATATAATTAAGGGTTTGGGATGTACGCTTGTGAAACTACATAAGTAAATACTTTATACAACAGTTTCGAAATTATTT-------TTTCCTAAATAATTAACACCATCCCTCTTCTACTAAAA-AT------AATACTACTGCAAAGTTATATAATTATCTAACATTAAATACAATCTAATATAT----TATCTAACAC---GAATTGGAATCTGCTACTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29865346 295 + 173848474 CAGAATAAATGTTCAAAGTGAAATTATTGATAGTGGAGAGAAGAGAATTAATTTCAGGAATCATAAACATAGCTGAAGGACATTGTAACGGATGCATATAATTAAGGGTTTGGGATGTACGCTTGTGAAACTACATAAGTAAATACTTTATACAACAGTTTCGAAATTATTT-------TTTCCTAAATAATTAACACCATCCCTCTTCTACTAAAA-AT------AATACTACTGCAAAGTTATATAATTATCTAACATTAAATACAATCTAATATAT----TATCTAACAC---GAATTGGAATCTGCTACTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5668276 295 +   6154872 CAGAATAAGTGTTCAAAGTGAAATTATTGATAGTGGAGAGAAGAGAATTAATTTCAGGAATCATAAACATAGCTGAAGGACATTGTAACGGATGCATATAATTAAGGGTTTGGGATGTACACTTGTGAAACTACATGAGTAAATACTTTATACAACAGTTTCAAAATTATTT-------TTTCCTAAATAATTAACACCATCCCTCTTCTACTAAAA-AT------AATAGCACTGCAAAGTTATATAATTATCTAACATTAAATACAATCTAATATAT----TATCTAACAC---TAATTGGAATCTGCTACTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29886282 298 + 172585720 CAGAATAAATGTTCAAAGTGAAATTATTGATAGTGGAGAGAAGAGGATTAATTTCAGGAATCATAAACATACCTGAAGGACATTGTAACAGATGCATATAATTAAGGGTTTGGGATGTACACTTGTGAAACTACGTAAGTAAATACCTTATACAACAGTTTCAAAATTATTT------ATTTCCTGAATAATTAACATCATCCCTCTTCTACTAAAA-AT------AATACTACTGCAAAGTTGTGTAATTATCTAACACTAAATACAATCTCATATAT----TATCTAACACT-GAAATTGGAATCTGCTACTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29549939 298 - 170955103 CAGAATAAATGTTCAAAGTGAAATTATTGATAGTGGAGAGAAGAGGATTAATTTCAGGAATCATAAACATACCTGAAGGACATTGTAACAGATGCATATAATTAAGGGTTTGGGATGTACACTTGTGAAACTACGTAAGTAAATACCTTATACAACAGTTTTGAAATTATTT------ATTTCCTGAATAATTAACATCATCCCTCTTCTACTAAAA-AT------AATACTACTGCAAAGTTGTGTAATTATCTAACACTAAATACAATCTCATATAT----TATCTAACACT-GAAATTGGAATCTGCTACTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2535719 298 -   2996164 CAGAATAAATGTTCAAAGTGAAATTATTGATAGTGGAGAGAAGAGGATTAATTTCAGGAATCATAAACATACCTGAAGGACATTGTAACAGATGCATATAATTAAGGGTTTGGGATGTACACTTGTGAAACTACGTAAGTAAATACCTTATACAACAGTTTCGAAATTATTT------ATTTCCTGAATAATTAACATCATCCCTCTTCTACTAAAA-AT------AATACTACTGCAAAGTTGTGTAATTATCTAACACTAAATACAATCTCATATAT----TATCTAACACT-GAAATTGGAATCTGCTACTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     301314 298 +    766320 CAGAATAAATGTTCAAAGTGAAATTATTGATAGTGGAGAGAAGAGGATTAATTTCAGGAATCATAAACATACCTGAAGGACATTGTAACAGATGCATATAATTAAGGGTTTGGGATGTACACTTGTGAAACTACGTAAGTAAATGCCTTATACAACAGTTTCGAAATTATTT------ATTTCCTGAATAATTAACATTATCCCTCTTCTACTAAAA-AT------AATACTACTGCAAAGTTGTATAATTATCTAACACTAAATACAATCTAATATAT----TATCTAACACT-GAAATTGGAATCTGCTACTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28789744 296 -  71996105 CAGAATAAATGTTCAAAGAGAGATTGTTGATAGTGGAGAGAAGAGGATTAATTTCAGGAATCATAAACATACCTGAAGGACATTGTAACAGATGCATATAATTAAGGGTTTGGGATGTACACTTGTGAAACTACATAAGCAAATACCT--TACAACAGTTTCAAAATTATTT------ATTTCCTGAATAATTAACATCATCCCTCTTCTACTAAAA-AT------AATACTACTGTAAATTTGTGTAATTATCTAACACTAAATACAATCTCATATAT----TATCTAACACT-GAAATTGGAATCTGCTACTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     271777 298 -    352859 CAGAATAAATGTTCAAAGTGAAATTATTGATAGTGGAGAGAAGAGGATTAATTTCAGGAATCATAAACATACCTGAAGGACATTGTAACAGATGCATATAATTAAGGGTTTGGGATGTACACTTGTGAAACTACGTAAGTAAATACCTTATACAACAGTTTCAAAATTATTT------ATTTCCTGAATAATTAACATCATCCCTCTTCTACTAAAA-AT------AATACTACTGCAAAGTTGTGTAATTATCTAACACTAAATACAATCTAATATAT----TATCTAACACT-GAAATTGGAATCTGCTACTTT
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     400207 298 +    730504 TAGAAGAAATATTTTAAATGTAATTGTTGATAGTGGAGGGAAAAGGATTAATTCCAGGAATCATAAACATAGCTGAAGGACGTTATAACTGATGCATATAATCAATGATTTGGGACGTATACACCTGAAACTACATAAGCAAATA-----TACTACAGTTCTGAAATTATTTTTCTTTTTTTCCTGGGTAA-TAGCAGCATCCCTCTTCCACTAAAA-AT------AATACTATTGCAAAGTTACGTAATTATCTAACACTAAATGCAATGCAACATAT----TATCTAACACC-GGAATTGGAGTCTGCCGCTTT
i proCoq1.NW_012152574v1   C 0 I 54
s otoGar3.GL873742          2064795 306 -   2232465 CAGAAGAAATATTTTAAATGGAAGTGTTGATAGTGGGGGGAAGAGGATTAATTCCAGGAATTACAAACATAGCTGAGGGATATTGGAACAGATGTATTTAA-CAAGGATTTGGGATGTACACACATGAAACTACATAAGCAAATA-----TACTGCAGTTCTGAAAATATTTTTCTTTTTTTCCTAGGTAA-TAGCAGAATACCTCTTCTATTAAAA-ATAATACCAATACCACTGTAAAGTTTTGTAA-TATCCAAAACTAAATGCAACCTAACATATTATCTATCTAACACT-GGAAATGGAATCTGCTACTTT
i otoGar3.GL873742         I 694 C 0
s dasNov3.JH570741           536657 281 +   1532071 GAGAAGAAATATTCAAAATGG---TGTTGATAGTGGAGTGTAGAGAATTAATCTCAGGAATCATAAACATAAGTGAAGGACATTATAAATGGTGCATGC-TTTGAGACATAGGGATGTACA----TGAAACTAAGTCAGTATAGA------ACTGTGGTTCTGAAATGTTTT---CTTTTTTTCTGCATAA-TAGAACCATGTGTCTACCACTAAAATAT------AGTAATACTGAAAAGTAATGGAATTCTCTCACATTAGATGAGAT-----ATGT----TATCTGATGCTCGAAATT--AACCTGACAATTT
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=192409.000000
s hg38.chr6_GL000254v2_alt   653986 56 +   4827813 TATGAAAACTGATTGTGATAGATACTAAAAGGTTACTC-ACCT-ATTTTTTTTT-ACTT
s panTro5.chr6             29627437 57 + 175400573 TATGAAAACTGATTGTGACAGATGCTAAAAGATTACTC-ACCT-ATTTTTTTTTTACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29865641 56 + 173848474 TATGAAAACTGATTGTGACAGATGCTAAAAGGTTACTC-ACCT-ATTTTTTTTT-ACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5668571 56 +   6154872 TATGAAAACTGATTGTGATCGACACTAAAAGATTACTC-ACCT-ATTTTTTTTT-ACTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29886580 55 + 172585720 TATCAATACTGATTGTGATAGATGCTAAAAGATTATTC-ACCT-A-TTTTTTTT-ACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29550237 55 - 170955103 TATCAATACTGATTGTGATAGATGCTAAAAGATTATTC-ACCT-A-TTTTTTTT-ACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2536017 55 -   2996164 TATCAATACTGATTGTGATAGATGCTAAAAGATTATTC-ACCT-A-TTTTTTTT-ACTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     301612 56 +    766320 TATCAATACTGATTGTGATAGATGCTAAAAGATTATTC-ACCT-ATTTTTTTTT-ACTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28790040 55 -  71996105 TATCAATACTGATTGTGATAGATGCTAAAAGATTATTC-ATCT-T-TTTTTTTT-ACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     272075 56 -    352859 TATCAATACTGATTGTGATAGATGCTAAAAGATTATTC-ACCTAT-TTTTTTTT-ACTT
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2065101 49 -   2232465 TCTGAATGACAATTTTTATA-----TTTAAGATTACTT-ACTA-A-TTATTTTC-TCT-
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           536938 53 +   1532071 TATGAGTGTTATTTTTAGCATGCATTTAAAGATTATTCTtccc-actttctttt-----
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     400505 54 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=766975.000000
s hg38.chr6_GL000254v2_alt   654042 158 +   4827813 CTCCCTCACTTCC-TTTTCCCTTTATTTCGTCTCTTTGTAACACAAATATACACA-CACTACCACTATCTCCATTAAACAGTCGTACACACTCAGACACTTAACTATAACATACATCTAT---ACTTGATCATAGAGTCTGC-TGCCCTGAAACC-AAAAAAAGT-
s panTro5.chr6             29627494 158 + 175400573 CTCCCTCACTTCC-TTTTCCCTTTATTTCGTCTCTTTGTAACACAAATATACACA-CACTACCACTATCTCCATTAAACAGTCATACACACTCAGACACTTAACTATAACATACACCTAT---ACTTGATCATAGAGTCTGC-TGCCCTGAAACC-AAAAAAAGT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29865697 158 + 173848474 CTCCCTCACTTCC-TTTTCCCTTTATTTCGTCTCTTTGTAACACAAATATACACA-CACTACCACTATCTCCATTAAACAGTCGTACACACTCAGACACTTAACTATAACATACACCTAT---ACTTGATCATAGAGTCTGC-TGCCCTGAAACC-AAAAAAAGT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5668627 157 +   6154872 CTCCCTCACTTCC-TTTTCCCTTTATTTCCTCTCTTTGTAACACAAATATACACA-CACTACCACTATCTCCATTAAACAGTCGTACACACTCAGACACTTAACTATAACATACACCTAT---ACTTGATCATAAAGTCTGC-TGCCCTGAAACC--AAAAAAGT-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29886635 158 + 172585720 CTCTCTCACTTCC-TTTTCCCTTTATTTCCTCGCTTTGTAACACAAATATAGACA-CACTACCACTATCTCCAGTAAACAGTCATTCACACTCAGACACTTACCTACAACATACACCTAT---ATTTGATCATAGAGTCTGC-TGCCCTGAAACC-AAAAAAAGT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29550292 158 - 170955103 CTCTCTCACTTCC-TTTTCCCTTTATTTCCTCGCTTTGTAACACAAATATAGACA-CACTACCACTATCTCCATTAAACAGTCATTCACACTCAGACACTTACCTACAACATACACCTAT---ATTTGATCATAGAGTCTGC-TGCCCTGAAACC-AAAAAAAGT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2536072 158 -   2996164 CTGTCTCACTTCC-TTTTCCCTTTATTTCCTTGCTTTGTAACACAAATATAGACA-CACTACCACTATCTCCATTAAACAGCCATTCACACTCAGACACTTAACTACAACATACACCTAT---ATTTGATCATAGAGTCTGC-TGCCCTGAAACC-AAAAAAAGT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     301668 159 +    766320 CTCCCTCACTTCC-TTTTCCCTTTATTTCCTTGCTTTGTAACGCAAATATACACA-CACTACCACTATCTCCATTAAACAGTCATTCACGCTCAGACACTTAACTACAACATACACCTAT---ACTTGATCATAGAGTCTGC-TGCCCTGAAACCAAAAAAAAGT-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28790095 159 -  71996105 CTCCCTCACTTCC-TTTTCCGTTTATTTCCTTGCTTTGTAACACAAATATACATA-TACTACCACTATCTCAATTAAACAGTCATTCACACTAAGACACTTAACTACAACATACACCTAT---ACTTGATCATAGAGTCTGC-TGTCCTGAAACCAAAAAAAAGT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     272131 159 -    352859 CTCCCTCACTTCC-TTTTCCCTTTATTTCCTTGCTTTGTAACACAAATATACACA-CACTACCACTATCTCCATTAAACAGTCATTCACGCTCAGACACTTAACTACAACATACATCTAT---ACTTGATCATAGAGTCTGC-TGCCCTGAAACCAAAAAAAAGT-
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     400559 156 +    730504 CTCCCTCACTTCCTTTTTCCCTTTATCTCATCTCTTTGTAACAC--ATATACACA-CACCACCACCACCTCCACTAAACAGTTATATACACAGAGACATTTAATTACCACATATACCTGT---ACTTGATCACTAAGACAGCATACCATGAAAC---CCAAAAAT-
i proCoq1.NW_012152574v1   I 54 I 73
s otoGar3.GL873742          2065150 150 -   2232465 CCCCCTCACTTCCTTTTTCCATTTATCCCCTCTCTTTGTAATAC---TATACACATCACCACCACCACGTCCCCT----AGTTATATACAC----ACATATAATTACAACATACACCTGT---ACTTAATCAATGAGACAGCCTACCATGAAACA-AACAAAAAT-
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           536991 150 +   1532071 -tcccttaatatc-ttatctttctctctctctacctccc--------tctccctc-tcCTACTACTCTCACCACTAAACAA----ACATATCCAGACATTTAAGTACAACATACACCTATCTCAATCACTCAGAGAGCCTAC-CCTCACATAAAAGAAAAAAAATA
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=342764.000000
s hg38.chr6_GL000254v2_alt   654200 79 +   4827813 CCAAAAAAAGCATAAGTAAATAGATCAGGAAATTTGAAGCTTCCCTCATAAATGTTTTATGTAATGAGCCCACCTGTTG
s panTro5.chr6             29627652 79 + 175400573 CCAAAAAAAGCATAAGTAAATAGATCAGGAAATTTGAAGCTTCCCTCATAAATGTTTTATGTAATGAGCCCACCTGTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29865855 79 + 173848474 CCAAAAAAAGCATAAGTAAATAGATCAGGAAATTTGAAGCTTCCCTCATAAATGTTTTATGTAATGAGCCCACCTGTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5668784 79 +   6154872 CCAAAAAAAGCGTAAGTAAATAGATCAGGAAATTTGAAGCTTCCCTCATAAATGTTTTGTGTAATGAGCCCACCTGTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29886793 78 + 172585720 GC-AAAAAAGCATAAATAAATAGATCAGGGAATTTGAAGCTTCCCTCGTAAATGTTTTATGTAATGAGCCCACCTGTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29550450 78 - 170955103 GC-AAAAAAGCATAAATAAATAGATCAGGGAATTTGAAGCTTCCCTCGTAAATGTTTTATGTAATGAGCCCACCTGTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2536230 78 -   2996164 GC-AAAAAAGCATAAATAAATAGATCAGGGAATTTGAAGCTTCCCTCGTAAATGTTTTATGTAATGAGCCCACCTGTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     301827 78 +    766320 CC-AAAAAAGTATAAACAAATAGATCAGGGAATTTGAAGCTTCCCTCGTAAATGTTTTATGTAATGAGCCCACCTGTTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28790254 78 -  71996105 CC-AAAAAAGTATAAATAAATAGATCAGGGAATTTGAAGCTTCCCTCGTAAATGTTTTATGTAATGAGCCCACCTGTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     272290 78 -    352859 CC-AAAAAAGTATAAATAAATAGATCAGGGAATTTGAAGCTTCCCTCGTAAATGTTTTATGTAATGAGCCCACCTGTTG
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2065300 72 -   2232465 -------TCATATAAATAAGGATATTGGGGAAATTTAAGCTTTCCTAGTTAATGGCTTATGCCATCAGTGTATCTGTTA
i otoGar3.GL873742         C 0 I 3
s dasNov3.JH570741           537141 77 +   1532071 CAAGGAAATGTATAAATAAAGAGATTAGGAAATCCAAAGCTTTTCTATCTAACCACTTTTGTG--GAGTGCTCTTGCTG
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     400715 73 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=399820.000000
s hg38.chr6_GL000254v2_alt   654279 88 +   4827813 --CATCCTGTAATCTTCATAGCCTATATTCaaagaggttcctccgtcactctaacccactcattccagtgatctcaacctcttttcatca--
s panTro5.chr6             29627731 88 + 175400573 --CATCCTGTAATCTTCATAGCCTATATTCAAAGAGGTTCCTCCGTCACTCTAACCCACTCATTCCAGTTATCTCAACCTCTTTTCATCA--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29865934 88 + 173848474 --CATCCTGTAATCTTCATAGCCTATATTCAAAGAGGTTCCTCCGTCACTCTAACCCACTCATTCCAGTTATCTCAACCTCTTTTCATCA--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5668863 88 +   6154872 --CATCCTGTAATCTTCATAGCCTATATTCAAAGAGGTTCCTCCGTCACTCTAACCCACTCATTCCAGTGATCTCAACTTCTTTTCATCA--
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29886871 66 + 172585720 --CATCCTGTAATCTTCATAGCCTACATTCAAAGAGTTTCCTCTCT----------------------TGATCTCAACCTCTTTTCATCA--
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29550528 66 - 170955103 --CATCCTGTAATCTTCATAGCCTACATTCAAAGAGTTTCCTCTCT----------------------TGATCTCAACCTCTTTTCATCA--
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2536308 88 -   2996164 --CATCCTGTAATCTTCATAGCCTACATTCAAAGAGTTTCCTCTCTTACTCTAACCCCCTCATTCCAGTGATCTCAACCTCTTTTCATCA--
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012002711v1     301905 88 +    766320 --CATCCTGTAATCTTCATAGCCTACATTCAAAGAGTTTCCTCAGTTACTCTAACCCACTCATTCCAGTGATCTCAACCTCTTTTCATCA--
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17            28790332 87 -  71996105 --TATCCTGTAATCTTCATAGCCTACATTCAAAGAGTTTCC-CAGTTACTCTAACCCACTCATTCCAGTGATCTCAACCTCTTTTCATCA--
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012099655v1     272368 88 -    352859 --CATCCTGTAATCTTCATAGCCTACATTCAAAGAGTTTCCTCAGTTACTCTAACCCACTCATTCCAGTGATCTCAACCTCTTTTCATCA--
i manLeu1.NW_012099655v1   C 0 I 1
s proCoq1.NW_012152574v1     400788 84 +    730504 --CACCCTGTAATTTTCAGAGCCT--ATTCAAAGAGATT-CCCAGTTACTCTCATTCA-CCATTCCGGGGATCTCAAACCCTTTCCATCA--
i proCoq1.NW_012152574v1   I 73 I 91
s otoGar3.GL873742          2065375 86 -   2232465 --CATCTTATAATTTCCATATCCT--ATTCAAAAAGATTGTCCATTTACTCTCACTCACCCATTCCATGGATTTAAACCCCTTTTCATTA--
i otoGar3.GL873742         I 3 I 1
s dasNov3.JH570741           537218 91 +   1532071 TCTCACCTGCAGTCTCCACAGTCTAAATTCAAAGACATTCCCCAGTTACTTTCACTCACACATTTTAATCCTCTCAACTT-TTTCCATCAGA
i dasNov3.JH570741         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=387655.000000
s hg38.chr6_GL000254v2_alt   654367 95 +   4827813 agagtttttctctactatcataatatcatttttctatttagtctaagccaatttgctctGCACATTCCTT---TGCACGTATCTTAGTATAAATATAA
s panTro5.chr6             29627819 95 + 175400573 AGAATTTTTCTCTACTATCATAATATCATTTTTCTATTTAGTCTAAGCCAATTTGCCCTGCACATTCCTT---TGCACGTATCTTAGTATAAATATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29866022 95 + 173848474 AGAATTTTTCTCTACTATCATAATATCATTTTTCTATTTAGTCTAAGCCAATTTGCCCTGCACATTCCTT---TGCACGTATCTTAGTATAAATATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5668951 95 +   6154872 AGAATTTTTTTCTACTATCATAATATCATTTTTCTATTTAGTCTAAGCCAATTTGCCCTGCACATTCCTT---TGCACGTAGCTTAGTATAAATATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29886938 90 + 172585720 AGAATTTTTCTTCACTGTTGTA-----ATTTTTCTATTTGGTCTAAGCCAATTTGCCCTGCACATCCCTT---TGCACATACCTTACTATGAATATAA
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29550595 90 - 170955103 AGAATTTTTCTTCACTGTTGTA-----ATTTTTCTATTTGGTCTAAGCCAATTTGCCCTGCACATCCCTT---TGCACATACCTTACTATGAATATAA
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2536397 90 -   2996164 AGAATTTTTCTTCACTGTTGTA-----ATTTTTCTATTTGGTCTAAGCCAATTTGCCCTGCACATCCCTT---TGCACATACCTTACTATGAATATAA
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1     301994 90 +    766320 AGAATTTTTCTCCACTGTCGTA-----ATTTTTCTATTTGGTCTAAGCCAATTTGCCCTGCACATCCCTT---TGCACATACCTTACTATGAATATAA
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17            28790420 90 -  71996105 AGAATTTTTCTCCACTGTTGTA-----ATTTTCCTATTTGGTCTAAGCCAATTTGCCCTGCACATCCCTT---TGCACATACCTTACTATGAATATAA
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012099655v1     272457 90 -    352859 AGAATTTTTCTCCACTGTTGTA-----ATTTTTCTATTTGGTCTAAGCCAATTTGCCCTGCACATCCCTT---TGCACATACCTTACTATGAATATAA
i manLeu1.NW_012099655v1   I 1 C 0
s otoGar3.GL873742          2065462 88 -   2232465 AGAATTTTCCTCTAATATCA-------CTTTTTCTATTTATTATAAGCTAATTTTTCCTTCACTTTCTTG---TGTACATACCTTAGAATGAATTTAG
i otoGar3.GL873742         I 1 C 0
s dasNov3.JH570741           537309 82 +   1532071 AAACTCTTCCTCT--------------GCTTTTTCATTC--TCAGAGCCAAATGACCCTGTATTTCCTTTGTCTATACATACCTTGGAATGAAAATAA
i dasNov3.JH570741         C 0 C 0
e proCoq1.NW_012152574v1     400872 91 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=1819736.000000
s hg38.chr6_GL000254v2_alt   654462 330 +   4827813 TTTTTGTGTCAAAAGAGTTATCCAAATATCATAGATCAGATGTATTTATTGTGTCCTTGAATAAAGTT-ATCAGAGAAAGTTCTGACTGCTCAAAACCTATTATAAACACCCTTATTGAAAACAACTTACATG-------------GAATCTAAGCAAATCTCATGTCTTATTATGGACAGAAAATGAACAGGCTAAATCTTCTCAGTAAACCTTCCCAGTAGCATCTTGAGCATTAACACTTTGGGA-TTTTCTCTCCAAGGACTTATTCTCTTTATATTTCTCTTCCCCTGTGTATCAGTTTATT-----------CCTTCTTTGATGTGCTTATGAGATCACTACATTGAT-TT
s panTro5.chr6             29627914 330 + 175400573 TTTTTGGGTCAAAAGAGTTATCCAAATATCATAGATCAGATGTATTTATTGTGTCCTTGAATAAAGTT-ATCAGAGAAAGTTCTGACTGCTCAAAACCTATTATAAACACCCTTATTGAAAACAACTTACATG-------------GAATCTAAGCAAATCTCATGTCTTATTATGGACAGAGAATGAACAGGCTAAATCTTCTCAGTAAACCTTCCCAGTAGCATCTTGAGCATTAACACTTTGGGA-TTTTCTCTCCAAGGACTTATTCTCTTTATATTTCTCTTCCCCTGTGTATCAGTTTATT-----------CCTTCTTTGATGTGCTTATGAGATCACTACATTGAT-TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29866117 330 + 173848474 TTTTTGGGTCAAAAGAGTTATCCAAATATCATAGATCAGATGTATTTATTGTGTCCTTGAATAAAGTT-ATCAGAGAAAGTTCTGACTGCTCAAAACCTATTATAAACACCCTTATTGAAAACAACTTACATG-------------GAATCTAAGCAAATCTCATGTCTTATTATGGACAGAGAATGAACAGGCTAAATCTTCTCAGTAAACCTTCCCAGTAGCATCTTGAGCATTAACACTTTGGGA-TTTTCTCTCCAAGGACTTATTCTCTTTATATTTCTCTTCCCCTGTGTATCAGTTTATT-----------CCTTCTTTGATGTGCTTATGAGATCACTACATTGAT-TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5669046 329 +   6154872 TTTTTGGGTCAAAAGAGTTATCCAAATATCATAGATCAGATGTATTTATTGTGTCCTTGAATAAA-TT-ATGAGAGAAAGTTCTGACTGCTCAAAACCTATTATAAACACCCTTACTGAAAACAACTTATATG-------------GAATCTAAGCAAATCTCATCTCTTATTATGGACAGAGAATGAACAGGCTAAATCCTCTCAGTAAACCTTCCCAGTAGCATCTTGAGCATTAACACTTTGGGA-TTTTCTCTCCAAGGATTTATTCTCTTTATATTTCTCTTCCCCTGTGTATCAGTTTATT-----------CCTTCTTTGATGTGCTTATGAGATCACTACATTGAT-TT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29887028 329 + 172585720 -TTTTGGCTCAAAAGAGTTATCCAAATAGCGTAGATCAGATGTATTTGTTGTGTCCTTGAATAAAGTT-ATCAGAGAAAGTTCTGACTGCTCAAAACTTATTATAAACACCTTTATTGAAAACAACTTATATG-------------GAATCTAAGCAAATCTCATTTCTTATTATGGACAGAAAACTAACAGGCTAAATCCTCTCAGTAAACCTTCCCAGTAGCATCTTGAGCATTAACACTTTGGGA-TTTTCTCTCCAAGGACTTATTCTCTTTATATTTCTCTTCCCCTATGTATCAGTTTATT-----------CCTTCTTTGATGTGCTTATGAGATCACTACATTGAT-TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29550685 329 - 170955103 -TTTTGGCTCAAAAGAGTTATCCAAATAGCGTAGATCAGATGTATTTGTTGTGTCCTTGAATAAAGTT-ATCAGAGAAAGTTCTGACTGCTCAAAACTTATTATAAACACCTTTATTGAAAACAACTTATATG-------------GAATCTAAGCAAATCTCATCTCTTATTATGGACAGAAAACTAACAGGCTAAATCCTGTCAGTAAACCTTCCCAGTAGCATCTTGAGCATTAACACTTTGGGA-TTTTCTCTCCAAGGACTTATTCTCTTTATATTTCTCTTCCCCTATGTATCAGTTTATT-----------CCTTCTTTGATGTGCTTATGAGATCACTACATTGAT-TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2536487 329 -   2996164 -TTTTGGCTCAAAAGAGTTATCCAAATAGCGTAGATCAGATGTATTTGTTGTGTCCTTGAATAAAGTT-ATCAGAGAAAGTTCTGACTGCTCAAAACTTATTATAAACACCTTTATTGAAAACAACTTATATG-------------GAATCTAAGCAAATCTCATCTCTTATTATGGACAGAAAACTAACAGGCTAAATCCTCTCAGTAAACCTTCCCAGTAGCATCTTGAGCATTAACACTTTGGGA-TTTTCTCTCCAAGGACTTATTCTCTTTATATTTCTCTTCCCCTATGTATCAGTTTATT-----------CCTTCTTTGATGTGCTTATGAGATCACTACATTGAT-TT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     302084 329 +    766320 -TTTTGGCTCACAAGAGTTATCCAAATATCATAGATCAGATGTATTTATTGTGTCCTTGAAAAAAGTT-ATCAGAGAAAGTTCTGACTGCTCAAAACTTATTATAAACACCTTTATTGAAAACAACTTATATG-------------GAATCTAAGCAAATCTCATCTCTTATTATGGACAGAGAACTAACAGGCTAAATCCTCTCAGTAAACCTTCCCAGTAGCATCTTGAGCATTAACACTTTGGGA-TTTTCTCTCCAAGGACTTACTCTCTTTATATTTCTCTTCCCCTATGTATCAGTTTATT-----------CCTTCTTTGATGTGCTTATGAGATCACTACATTGAT-TT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28790510 329 -  71996105 -TTTTGGCTCAAAAGAGTTATCCAAATATCGTAGGTCAGATGTATTTATTGTGTCCTTGAATAAAGTT-ATCAGAGAAAGTTCTGACTGCTCAAAACTTATTATAAACACCTTTATTGAAAACAACTTATATG-------------GAATCTAAGCAAATCTCATCTCTTATTATGGACAGAGAACTAACAGGCTAAATCCTCTCAGTAAACCTTCCCAGTAGCATCTTGAGCATTAACACTTTGGGA-TTTTCTCTCCAAGGACTTATTCTCTTTATATTTCTCTTCCCCTATGTATCAGTTTATT-----------CCTTCTTTGATGTGCTTATGAGATCACTACATTGAT-TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     272547 329 -    352859 -TTTTGGCTCAAAAGAGTTATCCAAATATCGTATATCAGATGTATTTATTGTGTCCTTGAAAAAAGTT-ATCAGAGAAAGTTCTGACTGCTCGAAACTTATTATAAACACCTTTATTGAAAACAACTTATATG-------------GAATCTAAGCAAATCTCATCTCTTATTATGGACAGAGAACTAACAGGCTAAATCCTCTCAGTAAACCTTCCCAGTAGCATCTTGAGCATTAACACTTTGGGA-TTTTCTCTCCAAGGACTTATTCTCTTTATATTTCTCTTCCCCTATGTATCAGTTTATT-----------CCTTCTTTGATGTGCTTATGAGATCACTACATTGAT-TT
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     400963 340 +    730504 TTTTTGGCTCAAAAAGAATATCCAAAAATCAGAGATCAGATGTATTTATTGTCTCCTTGAATAAAATT-ATCAGAGTAAGTTCTGATAGCTCAAAGCCTCATACATTTAACTTCATTGCAAACAGCTTATATCTAAGTGTAATATTGAATCTCAGCAAATCTCATCTCTTATTCTGGACAGAGAACAAACAGGCTAAATCCTCT--GTAAA--TCTCC--TGGCATCTCGGGCATTAATGTTTTGGGATTTTTCTCTCCAAGGACTTATTCTTTCTATATTTCTCTTCCCATAAGTATCAATTTATTC----------CCTTCCCTGGTATGTTTGTGAAATCACTACATGGATGTT
i proCoq1.NW_012152574v1   I 91 C 0
s otoGar3.GL873742          2065550 343 -   2232465 GTTTGGGCTCAAAAATAATATCCAAGAATCAGAGATTATGTCTATTTATTGTCTCCTTAAATAAAATT-ATCAGAGTAAGTTCTGGCAGTTCAAAGCTTCATATATATAATTTCATTGCAAATAGCTTATATATAAGTGTAACACTGAATCTTAGCAAATACCATCTCTTATTCTGGACAGAGAACAAACAGGCTAAATCTTCT--ATAAAGGTCTCCAGTGGCATCTTGAGCATTAATGTTTTGGGATTTTTCTCTCTAGAGATGTATTCTTTCTGTATTTCTCTTCCAATACATGTCATTTTATTC----------CCTTCTTTGGTATATTTGTGAAATCATTACGTTGat-tt
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH570741           537391 348 +   1532071 TCTTTGACTCAAAAG-GATATCCCCAAATCAGGGATCAAATGTATTTACTGTCTCCTAGAAGGAAATTAACCAGAGATAATTTTCCCTATTCGGAG---AGAGTACTCATTTTTATTACAAATGACTTATGTCTAAGTGTAAGACTCAATCTTAGCAGATCTCTTTTCTTATTCTTTCACAGGAAGAAGCAGGTTAAACACTCT--ATAGATCTCCCCTGTGGCAGCTTGGTCACCAATGTCTTGAGT-TTCTTTCCCCAAGGACGTATTCGCTCCAAATTTCTCTTCCCATAAGTATCTATTTAATTCCTTTTTTTACCTTTTTTTTCCTGTTTATGAGG-CACTACTTTGGC-TT
i dasNov3.JH570741         C 0 N 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=327394.000000
s hg38.chr6_GL000254v2_alt   654792 63 +   4827813 --AAGTAATAATAATAAATTTTTGGCAGAGCCCTTCATTAGTCATAAG-AAAAAAAGAGTGATGAT
s panTro5.chr6             29628244 63 + 175400573 --AAGTAATAATAATAAATTTTTGGCAGAGCCCTTCATTAGTCATAAG-AAAAAAAGAGTGATGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29866447 63 + 173848474 --AAGTAATAATAATAAATTTTTGGCAGAGCCCTTCATTAGTCATAAG-AAAAAAAGAGTGATGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5669375 63 +   6154872 --AAGTAATAATAATAAATTTTTGGCAGAGCCCTTCATTAGTCATAAG-AAAAAAAGAGTGATGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29887357 64 + 172585720 --AAATAATAATAATAAATGTTTGGCAGAGCCCTTCATTGGTCATAAGAAAAAAAAGAGTGATGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29551014 64 - 170955103 --AAATAATAATAATAAATGTTTGGCAGAGCCCTTCATTGGTCATAAGAAAAAAAAGAGTGATGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2536816 63 -   2996164 --AAATAATAATAACAAATGTTTGGCAGAGCCCTTCATTGGTCATAAG-AAAAAAAGAGTGATGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     302413 63 +    766320 --AAATAATAATAATAAATGTTTGGCAGAGCCCTTCATTGGTCATAAG-AAAAAACGAGTGATGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28790839 63 -  71996105 --AAATAATAATAATAAATGTTTGGCAGAGCCCTTCATTGGTCATAAG-AAAAAAAGAGTGATGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     272876 63 -    352859 --AAATAATAATAATAAATGTTTGGCAGAGCCCTTCATTGGTCATAAG-AAAAAAAGAATGATGAT
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     401303 65 +    730504 AAAAATAGTAATAATAAATTTTTGGTAGAGTCCTTTGTCAGTCATGAG-AAAAAAAGAGTGACGGC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2065893 65 -   2232465 aaaaataataataataaattttGGAGAGAGTCCTTTGTTAGTCATAAG-AAGAAAAGAGTGTTAAA
i otoGar3.GL873742         C 0 I 1238
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=1078861.000000
s hg38.chr6_GL000254v2_alt   654855 205 +   4827813 AATATAAAAGAAAGAGAAGACACAGCTCCTATCCTTGAGAAATCTAACATCTAATGAATCTGAAAAGTAATATCACTTAGAACAATATAATGAAAACTAAAAATGATTAATTATAAACTGAGGTCTACAGATATTGAAATGG-AAAGATTTAAGCAAATTATGATCAAACAGGGAAGACTAAACAGTGGAGATAAATTTGGTTAAC
s panTro5.chr6             29628307 205 + 175400573 AATATAAAAGAAAGAGAAGACACAGCTCCTATCCTTGAGAAATCTAACATCTAATGAATCTGAAAAGTAATATCACTTAGAACAATATAATGAAAACTAAAAATGATTAATTATAAACTGAGGTCTACAGATATTGAAATGG-AAAGATTTAAGCAAATTATGATCAAACAGGGAAGACTAAACAGTGGAGATAAATTTGGTTAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29866510 205 + 173848474 AATATAAAAGAAAGAGAAGACACAGCTCCTATCCTTGAGAAATCTAACATCTAATGAATCTGAAAAGTAATATCACTTAGAACAATATAATGAAAACTAAAAATGATTAATTATAAACTGAGGTCTACAGATATTGAAATGG-AAAGATTTAAGCAAATTATGATCAAACAGGGAAGACTAAACAGTGGAGATAAATTTGGTTAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5669438 205 +   6154872 AATATAAAAGAAAGAGAAGACACAGCTCCTATCCTTGAGTAATCTAACATCTAATGAATCTGAAAAGTAATATCACTTAGAACAATATAATGAAAACTAAAAATGATTAATTATAAACTGAGATCTACAGATATTGAAATGG-AAAGATTTAAGCAAATTATGATCAAACAGGGAAGACTAAACAGTGGAGATAAATTTGGTTAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29887421 205 + 172585720 AATGTAAAAGAAAGAGAAGACACAGCTCCTATCCTTGAGAAATCTAACATCTAATGAATCTGAAAACTAATATCACTTAGAACAATATAATGAAAACGAAAAATGATTAATTATGAACTGAGGTCTACAGATATAGAAATGG-AAAGATTTAAGCAAATTCTGATCAAACAGGGAAGACTAAACAGTGGAGATAAATTTGGTTAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29551078 205 - 170955103 AATGTAAAAGAAAGAGAAGACACAGCTCCTATCCTTGAGAAATCTAACATCTAATGAATCTGAAAACTAATATCACTTAGAACAATATAATGAAAACGAAAAATGATTAATTATGAACTGAGGTCTACAGATATAGAAATGG-AAAGATTTAAGCAAATTCTGATCAAACAGGGAAGACTAAACAGTGGAGATAAATTTGGTTAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2536879 204 -   2996164 AATGTAAAAGAAAGAGAAGACACAGCTCCTATCCTTGAGAAATCTAACATTTAATGAATCTGAAAACTAATATCACTTAGAACAATA-AATGAAAACGAAAAATGATTAATTATGAACTGAGGTCTACAGATATAGAAATGG-AAAGATTTAAGCAAATTCTGATCAAACAGGGAAGACTAAACAGTGGAGATAAATTTGGTTAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     302476 205 +    766320 AATATAAAAGAAAGAGAAGACACAGCTCCTATCCTTGAGAAATCTAACATCTAATGAATCTGAAAAGTAATATCACTTAGGATAATATAATGAAAACTAAAAATGATTAATTATGAACTGAGGTCTACAGATATAGAAATGG-AAAGATTTAAGCAAATTTTGATCAAACAGGGAAGACTAGACAGTGGAGATAAATTTGGTTAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28790902 205 -  71996105 AATATAAAAGAAAGAGAAGACACAGCTCCTATCCTTGAGAAATCTAACATCTAATGAATCTGAAAAGTAATATCACTTAGAATAATATAATGAAAACTAAAAATGATTAATTATGAACTGAGGTCTACAGATATGGAAATGG-AAAGATTTAAGCAAATTCTGATCAAACAGAGAAGACTAGACAGTGGAGATAAATTTGGTTAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     272939 205 -    352859 AATATAAAAGAAAGAGAAGACACAGCTCCTATCCTTGAGAAATGTAACATCTAATGAATCTGAAAAGTAATATCACTTAGAATAATATAATGAAAACGAAAAATGATTAATTATGAACTGAGGTCTACAGATATAGAAATGG-AAAGATTTAAGCAAATTATGATCAAACAGGGAAGACTAAACAGTGGAGATAAATTTGGTTAAC
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     401368 206 +    730504 AATATAAACGAAAGAGAAGACACAGCTCCTACCCCTGAGAAATCTAACACCTAGTGAATGTGAAGAGTGATGTCACTTAAACCAATATAATGGAAACTAAAAAGGATGAATTATAAACTGTGTTTTACAGGTATAAAAAAGGGAAAGATTTGGGCAAATTATGATCAAACAGGGAAGGCTGAAGAATGGAGATAAATTTAGTTAAC
i proCoq1.NW_012152574v1   C 0 I 34
s otoGar3.GL873742          2067196 200 -   2232465 AATATAAAAGAAAGAGAAGACACAAGTCCTGTTCTTGAGAAATCAAATATCTAGTGAATGTGAA-AATAATATTACTTAGAGAAATACAAGAGAAACTAAAA-----GAATTAGAAATTGAGTTTTACATGTATAGAAAAGGAAAATATTTAGGTAAATTATGATCAAAGAGGGGAGGCTGAACACTGAAGATAAATTCAGTTAAT
i otoGar3.GL873742         I 1238 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=192533.000000
s hg38.chr6_GL000254v2_alt   655060 47 +   4827813 ATACTTTTAGGGATTAGTGTTTATATAGATTCTTGGAAGAGACAACT
s panTro5.chr6             29628512 47 + 175400573 ATACTTTTAGGGATTAGTGTTTATATAGATTCTTGGCAGAGACAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29866715 47 + 173848474 ATACTTTTAGGGATTAGTGTTTATATAGATTCTTGGCAGAGACAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5669643 47 +   6154872 ATACTTTTAGGGATTAGTGTTTATATAGATTCTTGGCAGAGACAACT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29887626 47 + 172585720 ATGCTTTTAGGGATTAGTGTTTATATAGATTCTTGGCAGAGACAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29551283 47 - 170955103 ATGCTTTTAGGGATTAGTGTTTATATAGATTCTTGGCAGAGACAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2537083 47 -   2996164 ATGCTTTTAGGGATTAGTGTTTATATAGATTCTTGGCAGAGACAATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     302681 47 +    766320 ATGCTTTTAGGGATTAGTGTTTATATATATTCTTGGCAGAGACAATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28791107 47 -  71996105 ATGATTTTAGGGATTAGTGTTTATATAGATTCTTGGCAGAGACAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     273144 47 -    352859 ATGCTTTTAGGGATTAGTGTTTATATATATTCTTGGCAGAGACAATT
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2067396 34 -   2232465 TTAGTTTTAAGGATT-------------ACTCTAGGCAAAAGCAGTC
i otoGar3.GL873742         C 0 C 0
e proCoq1.NW_012152574v1     401574 34 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=958092.000000
s hg38.chr6_GL000254v2_alt   655107 191 +   4827813 TTATGTATGGAGCCCATTGAAATAATTAAAAACATCTAACTAAAGTCATTATTTGTACTATTATGATCAATGTTCTTTCTTACTGTGAATAAAGAAATGGTAAA--TTTCCTGAGCCCTATGTTAATTCATGAACAACCAATAAAATCAATTTTATGATTTACTAGAAATATCTCCAAAGTTTTAATTTCA--AC
s panTro5.chr6             29628559 191 + 175400573 TTATGTATGGAGCCCATTGAAATAATTAAAAACATCTAACTAAAGTCATTATTTGTACTATTATGATCAATGTTCTTTCTTACTGTGAATAAAGAAATGGTAAA--TTTCCTGAGCCCTATGTTAATTCATGAACAACCAATAAAATCAATTTTATGATTTACTAGAAATATCTCCAAAGTTTTAATTTCA--AC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29866762 191 + 173848474 TTATGTATGGAGCCCATTGAAATAATTAAAAACATCTAACTAAAGTCATTATTTGTACTATTATGATCAATGTTCTTTCTTACTGTGAATAAAGAAATGGTAAA--TTTCCTGAGCCCTATGTTAATTCATGAACAACCAATAAAATCAATTTTATGATTTACTAGAAATATCTCCAAAGTTTTAATTTCA--AC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5669690 191 +   6154872 TTATGTATGGAGCCCATTGAAATAATTAAAAACATCTAACTAAAGTCATTATTTGTACTATTATGATCAATGTTCTTTCTTATTGTGAATAAAGAAATGGTAAA--TTTCCTGAGCCCTATGTTAATTCGTGAACAACCAACAAAATCAATTTTATGATTTACTAGAAATATCTCCAAAGTTTTCATTTCA--AC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29887673 193 + 172585720 TTATGTATGGAGTCTATTGAAATAATTAAAAACATCTAACTAAAGTAATTATTTGTACTATTATGATCAATGTTCTTTCTTACTATGAATAAAGAAATGATAAA--TTTCCTGGGCCCTATGTTTATTCATGAACAACCAACAAAATCAGTTTTATGATTTACTAGAAATAACGCCAAAGTTTTAATTTCAACAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29551330 193 - 170955103 TTATGTATGGAGTCTATTGAAATAATTAAAAACATCTAACTAAAGTAATTATTTGTACTATTATGATCAATGTTCTTTCTTACTATGAATAAAGAAATGATAAA--TTTCCTGGGCCCTATGTTTATTCATGAACAACCAACAAAATCAGTTTTATGATTTACTAGAAATAACGCCAAAGTTTTAATTTCAACAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2537130 193 -   2996164 TTATGTATGGAGTCTATTGAAATAATTAAAAACATCTAACTAAAGTAATTATTTGTACTATTATGATCAATGTTCTTTCTTACTATGAATAAAGAAATGATAAA--TTTCCTGGGCCCTATGTTTATTCATGAACAACCAACAAAATCAGTTTTATGATTTACTAGAAATAACGCCAAAATTTTAATTTCAACAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     302728 193 +    766320 TTATGTATGGAGTCTATTGAAATAATTAAAAGCGTCTAACTAAAGTAATTATTTGTACTATTATGATCAATGTTCTTTCTTACTATGAATAAAGAAATGATAAA--TTTCCTGGGCTCTATGTTAATTTATGAACAACCAACAAAATCAGTTTTATGATTTACTAGAAATATCGCCAAAGTTTTAATTTCAACAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28791154 193 -  71996105 TTAGGTATGGAGTCTATTGAAATAATTGAAAACATCTAACTAAAGTAATTATTTGTACTATTATGATCAATGTTCTTTCTTACTATGAATAAAGAAATGATAAA--TTTCCTGGGCCCTATGTTAATTCATGAACAACCAACAAAATCAGTTTTATGATTTACTAGAAATATTACCAAAGTTTTAATTTCAACAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     273191 193 -    352859 TTATGTATGGAGTCTATTGAAATAATTAAGAACATCTAACTAAAGTAATTATTTGTACTATTATGATCAATGTTCTTTCTTACTATGAATAAAGAAATGATAAA--TTTCCTGGGCCCTATGTTAATTTATGAACAACCAACAAAATCAGTTTTATGATTTACTAGAAATATCGCCAAAGTTTTAATTTCAACAC
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     401608 188 +    730504 TTATGTATGGAATCTATTGAAATAATGCAAAGCTTCTAACTATAGTCATTATTTGTACTAATATTATCAATA---TTTCTTAATGTGTACAGAGAAGTGATATA--TTTCTTGGATCCTATGTCAATTCGCTAACAACCGACAAAATAAATTTTATAACTTATTAGAAATGTTGCCAAAGCTTTTATTTCA--AC
i proCoq1.NW_012152574v1   I 34 I 66
s otoGar3.GL873742          2067430 190 -   2232465 TTATATATGGAATTTATTGAAATAATGCAAAGCATATAACTAAAGTAATTATTTCTACTACTTTTATTGATATTCTTTCTTAATGTGAATAGAGAAATGATATGATATTCCAGGATTCTATGTCAATTCACTAACAACCAACAAAACCAATTTTATGATTTATT-GGAATGTTACCAAAGCTTT--TTTTA--AC
i otoGar3.GL873742         C 0 I 2
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=127873.000000
s hg38.chr6_GL000254v2_alt   655298 29 +   4827813 TATCGCTGTTACTTTAGGGTAAGTGTCAA
s panTro5.chr6             29628750 29 + 175400573 TATCGCTGTTACTTTAGAGTAAGTGTCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29866953 29 + 173848474 TATCGCTGTTACTTTAGAGTAAGTGTCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5669881 29 +   6154872 TATCACTGTTACTTTAGGGTAAGTGTCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29887866 29 + 172585720 TATCCTTGTTACTTTAGGGTAAGTGTCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29551523 29 - 170955103 TATCCTTGTTACTTTAGGGTAAGTGTCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2537323 29 -   2996164 TATCCTTGTTACTTTAGGGTAAGTGTCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     302921 29 +    766320 TATCCCTGTTACTTTAGGGTAAGTGTCAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28791347 29 -  71996105 TATCCCTGTTACTTTAGGGTAAGTGTCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     273384 29 -    352859 TATCCCTGTTACTTTAGGGTAAGTGTCAA
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2067622 29 -   2232465 AATTTTTGTTATCTTAGGGCAAGGGTCAA
i otoGar3.GL873742         I 2 I 836
e proCoq1.NW_012152574v1     401796 66 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=207157.000000
s hg38.chr6_GL000254v2_alt   655327 54 +   4827813 AGACAAGTCATGTTAACACACAGATTAGTTGTAGGATGAGACTCACTGAAATGG
s panTro5.chr6             29628779 54 + 175400573 AGACAAGTCATGTTAACACACAGATTAGTTGTAGGATGAGACTCACTGAAATAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29866982 54 + 173848474 AGACAAGTCATGTTAACACACAGATTAGTTGTAGGATGAGACTCACTGAAATAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5669910 54 +   6154872 AGACAAGTCATGTTAACACACAGATTAGTTGTAGGATGAGACTCACTGAAATAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29887895 54 + 172585720 AGACAAGTCAGATTAACACACAAATTAGTTGTAGGATGAGACTCAGTGAAATAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29551552 54 - 170955103 AGACAAGTCAGATTAACACACAAATTAGTTGTAGGATGAGACTCAGTGAAATAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2537352 54 -   2996164 AGACAAGTCAGATTAACACACAAATTAGTTGTAGGATGAGACTCAGTGAAATAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     302950 54 +    766320 AGACAAGTCAGATTAACACACAGATTCGTTGTAGGATGAGACTCAGTGAAATAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28791376 54 -  71996105 AGACAAGTCAGATTAACACACAGATTAGTTGTAGGATGAGACTCAATGAAACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     273413 54 -    352859 AGACAAGTCAGATTAACACACAGATTAGTTGTAGGATGAAACTCAGTGAAATAG
i manLeu1.NW_012099655v1   C 0 C 0
e proCoq1.NW_012152574v1     401796 66 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2067651 836 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=196995.000000
s hg38.chr6_GL000254v2_alt   655381 41 +   4827813 CTCTTAGGAAACTGGGTCTTAGACAATTTAGTTTTCAACAA
s panTro5.chr6             29628833 41 + 175400573 CTCTTAGGAAACTGGGTCTTAGACAATTTAGTTTTCAACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29867036 41 + 173848474 CTCTTGGGAAACTGGGTCTTAGACAATTTAGTTTTCAACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5669964 41 +   6154872 CTCTTAGGAAACTGGGTCTTAGACAATTTAGTTTTCAACAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29887949 41 + 172585720 CTCTTAGGAAACTGGGTCTTAGACAATTTAGTTTTCAACAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29551606 41 - 170955103 CTCTTAGGAAACTGGGTCTTAGACAATTTAGTTTTCAACAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2537406 41 -   2996164 CTCTTAGGAAACTGGGTCTTAGACAATTTAGTTTTCAACAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     303004 41 +    766320 CTCTTAGGAAACTGGGTCTTAGACAATTTAGTTTTCAACAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28791430 41 -  71996105 CTCTTAGGAAACTGGGTCTTAGACAATTTAGTTTTCGGCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     273467 41 -    352859 CTCTTAGGAAACTGGGTCTTAGACAATTTAGTTTTCAACAA
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2068487 41 -   2232465 CTCTAAGGAAACTAGTATTTAGACAATTCAGTTTCCAACAA
i otoGar3.GL873742         I 836 C 0
e proCoq1.NW_012152574v1     401796 66 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=294557.000000
s hg38.chr6_GL000254v2_alt   655422 55 +   4827813 ATTGGCCTATTCCCCTTCAAAGTCCCATACAATGGAGAGTTATGCTGCCAATATG
s panTro5.chr6             29628874 54 + 175400573 -TTGGCCTATTCCCCTTCAAAGTCCCATACAATGGAGAGTTATGCTGCCAATATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29867077 54 + 173848474 -TTGGCTTATTCCCCTTCAAAGTCCCATACAATGGAGAGTTATGCTGCCAATATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5670005 54 +   6154872 -TTGGCCTATTCCCCTTCAAAGTCCCATACAATGGAGAGTTATGCTGCCAATATG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29887990 54 + 172585720 -TTGGCCTATTCCCCTTCAAAGTCCCATACAATGGAGAGTTATGCTGCCAATATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29551647 54 - 170955103 -TTGGCCTATTCCCCTTCAAAGTCCCATACAATGGAGAGTTATGCTGCCAATATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2537447 54 -   2996164 -TTGGACTATTCCCCTTCAAAGTCCCATACAATGGAGAGTTATGCTGCCAATATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     303045 54 +    766320 -TTGGCCTATTCCCCTTCAAAGTCCCATACAATGGAGAGTTATGCTGCCAATATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28791471 54 -  71996105 -TTGGCCTATGACCCTTCCAAGTCCCATACAATGGAGAGTTATGCTGCCTGTATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     273508 54 -    352859 -TTGGCCTATTCCCCTTCAAAGTCCCATACAATGGAGAGTTATGCTGCCAATATG
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     401862 55 +    730504 ATTGGCCTATTCCCCTTCAGAATTTCACACAATAGAGAGTCATGTTGCCCATATG
i proCoq1.NW_012152574v1   I 66 I 9408
s otoGar3.GL873742          2068528 54 -   2232465 -TTGGCCTATTCCCCTTCAGAATTTCACACAATGGACAGTGATATTGCTCATATG
i otoGar3.GL873742         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=574608.000000
s hg38.chr6_GL000254v2_alt   655477 134 +   4827813 GCCATGAAAGCTCCT------------------TAGAGGAATAAAATGC-AAAATAAATAAAACAAAAACTAAACATCCTAGAGAATGATTAAAAGCAAGCATATTTGTGAGTGGAATCAAAGA-TAGAAAAAAGGGATAGAGAACTAGGTGGg
s panTro5.chr6             29628928 134 + 175400573 GCCATGAAAGCTCCT------------------TAGAGGAATAAAATGC-AAAATAAATAAAACAAAAACTAAACATCCTAGAGAATGATTAAAAGCAAGCATACTTGTGAGTGGAATCAAAGA-TAGAAAAAAGGGATAGAGAACTAGGTGGg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29867131 134 + 173848474 GCCATGAAAGCTCCT------------------TAGAGGaataaaatgc-aaattaaataaaacaaaaACTAAACATCCTAGAGAATGATTAAAAGCAAGCATACTTGTGAGTGGAATCAAAGA-TAGAAAAAAGGGATAGAGAACTAGGTGGg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5670059 134 +   6154872 GCCATGAAAGCTCCT------------------TAGAGGAATAAAATGC-AAAATAAATAAAACAAAAACTTAACATCCTAGAGAATGATTAAAAGCAAGCATATTTGTGAGTGGAATCAAAGA-TAGAAAAAAGGGATAGAGAACTAGGTGgg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29888044 135 + 172585720 GCCATGAAAGCTCCT-----------------GTAGAGGAATAAAATGC-AAAATAAATCAAACAAAAACTTAACATCCTAGAGAATGATTAAAGGCAAGTGTATTTGTGAGTGGAATCAAAGG-TAGAAAAAAGGGATAGAGAACTAGGTGgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29551701 135 - 170955103 GCCATGAAAGCTCCT-----------------GTAGAGGAATAAAATGC-AAAATAAATCAAACAAAAACTTAACATCCTAGAGAATGATTAAAGGCAAGTGTATTTGTGAGTGGAATCAAAGG-TAGAAAAAAGGGATAGAGAACTAGGTGgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2537501 135 -   2996164 GCCATGAAAGCTCCT-----------------GTAGAGGAATAAAATGC-AAAATAAATCAAACAAAAACTTAACATCCTAGGGAATGATTAAAGGCAATTGTATTTGTGAGTGGAATCAAAGG-TAGAGAAAAGGGATAGAGAACTAGGTGgg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     303099 135 +    766320 GCCATGAAAACTCCT-----------------GTAGAGGGATAAAATGC-AAAATAAATCAAACAAAAACTTAACATCCGAGAGAATGATTAAAAGCAAGTGTATTTGTGAGTGGAATCAAAGG-TAGAAAAAAGGGATCGAGAACTAGGTGgg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28791525 134 -  71996105 GCCATGAAAGCTCCT-----------------GTAGAGGAATAAAATGC-AAAATAAATCAAACAAAAACTTAACATCCTAGAGAATGATTAAAAGCAAGTGTATTTCTGAGTGGAATCAAAGG-TAGAAAAAAGGGATAGAGAACTAGGt-gg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     273562 135 -    352859 GCCATGAAAGCTCCT-----------------GTAGAGGAATAAAATGC-AAAATAAATCAAACAAAAACTTAACATCCTAGAGAATGATTAAAGGCAAGTGTATTTGTGAGTGGAATCAAAAG-TAGAAAAAAGGGATAGAGAACTAGGTGgg
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2068582 154 -   2232465 TCCATGGAAGCTTCTACTTGATTTACCCACCTATAGGGggataaaatacaaaaatttatcaaacaaaaacttaacattctgaagaaagagcaatagcaagcatatttatgtgtgaagccaaagactgggaaaaaaggataagtaacttggtggg
i otoGar3.GL873742         C 0 I 13105
e proCoq1.NW_012152574v1     401917 9408 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=8420122.000000
s hg38.chr6_GL000254v2_alt   655611 2211 +   4827813 gttttttttcctgatatctgt-atctttggtacagttcttattcataacctaaattgttttcctgatttctttgtataatttttaaatactgtctggtatctcactgagctgttttagtatcaaaattttgaatactctgcctgggattgttgacatttcttttttattgggatctgttgctggagaattattgtgtccttatgttgatatctgcatatctagtataacagttacttttttaaattttttgaatttgctctcatggggaggactttttccagaagatgtatctaaggtgtagtttgg-gtagggttctctggttttgattctgggtgtgtacaatagtgcagtctctgtatgatttcttcatctgtaaacagtgtcagtggtgtctgtgatttctttggtggcttaggatatggttgttagtggaggctgtgctgaagtcttgctaagaactgagatgccagttgggccagtcttcggcttccattggtagaatcagtgggatgagcatgtgtgtccttgggccccagggcagcatacactggcaccaatgttagcgggtttaggcaagacagttcttgtgcttccaagtggcttgcttggcttctgggaatggcatcagtagttcaggtatgaagttgaattcttgagccctttggcagtggatgtggtgtgggtgatggcagtagcagtggtgggacagccctctgggacccgtgtagtccatgctgatattggcaatggctgtgacaggttgggcaggtcagttcccagatccacaggaggcacatgagtgtggatgtcagctgtggtgccaggggaaggttgagtggggctgacctcagatcccaggaggggtgctgaggagctaccagtgatggactgggctaagtgaccctcgggcccctgtacggtgtgctcagattctgtgggtgggtgaagccaggctgagtagaccttcccatgggctccttggtggtgtatgaggcactggctatggtaggcaggggcagggggatccccaggccacagatggaatgctcagataggagtggtagtggctgttttgtggtcatggactggggaggactgggttgcttttcctgggaacaaccataggcaagaaactggggaggcatgggctttgctcatgcctctgccccacagtagttcatcatggcagcagttgcaggcagtgaaatttgtcctcagggcaagtaaaaatgtgtcgttgtccctctggtcggggtaacgggaggtgggattactccctagggctcttgcctcggtctcagaagcagagtaagatgcagtgcgttgggatctgtgctgtcaaaatggtgccgtgctgcagttagttaggacttagggttcgtgggacccagtgtgaggttctttcttgggtagcgccttcacgtggtctccaggcagctccctatgttagtctcaggggctacgatggttgaggggatctcctgtggctagaattgtaggtatctgtggtg-aaatgtgggctgctgggagtctccccctttcccttttcccacattggagagccgctcgagactcatatccgatcttggttgaacaggcggtctcatttccttctcctttgcttttggtgcttcctggtcacttctctgctgactttcggtgttctctcttagatgatctattcaacgtgtgattattgactggttattttggttactttacatggaagggccaagtaccagatgtatcaagtcagccatgttggagcctctccAGCTCCATTCAAGGGGCCTGTTTTGAGTTGGCCCTAGGCCTTTCCCCGTAAGCAAACTTTCTATAACATTGAAATTACTTGGGAAAAAAAGCTGTCAAAAGACTTTGAGGGtgttttgttttgttttgttttgttttgttttgttttgttttgttttatggcgtctcacgctgtcacccaggctggaatacagtgg--caatctctgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcgtacacccccatgcccagctaatttatgtatttttagtagagatggagtttcaccatgctggccaggctggtctggaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgccgggattacaggcgtgagccactgcactcagccAACTTGGAGGTATTTTGGG
s panTro5.chr6             29629062 2187 + 175400573 gtttttttccctgatatctgttatctttggtacagttcttattcataacctaaattgttttcctgatttctttgtataatttttaaatactgtctggtatctcactgagctgttttagtatcaaaattttgaatactttgtctgggattgttgacatttcttttttattgggatctgttgctggagaattattgtgtccttatgttgatatctgcatacctagtataacagttactttttaaaattttttgaatttgctctcatggggaggactttttccagaagatgtatctaaggtgtagtttgg-gtagggttctctggttttgattctgggtgtgtacaatagtgcagtctctgtatgatttcttcatctgtaaacagtgtcagtggtgtctgttatttctttggtggcttaggatatggttgttagtggaggctgtgctgaagtcttgctaagaactgagatgccagttgggccagtcttcggcttccattggtagaatcagtgggatgagcatgtgtgtccttgggccccagggcagcatacactggcaccaatgttagcgggtttaggcaagacagttcttgtgcttccaagtggcttgcttggcttctgggaatggcatcagtagttcaggtatgaagttgaattcttgagccctttggcagtggatgtggtgtgggtgatggcagtagcagtggtgggacagccctctgggacccatgtagtccatgctgatattggcaatggctgtgacaggttgggcaggtcagttcccagatccacaggaggcacatgagtgtggatgtcagctgtggtgccaggggaaggttgagtggggctgacctcagatcccaggaggggtgctgaggagctaccagtgatggactgggctaagtgaccctcgggcccctgtacggtgtgctcaggttctgtgggtgggtgaagccaggctgagtagaccttcccacgggctccttggtggtgtatgaggcactggctatggtaggcaggggcagggggatccccaggccacagatggaatgctcagataggagtggtagtggctgttttgtggtcatggactggggaggactgggttgcttttcctgggaacaaccataggcaagaaactggggaggcatgggctttgctcatgcctctgccccacagtagttcatcatggcagcagttgcaggcagtgaaatttgtcgtcagggcaagtaaaaatgtgtagttgtccctctggtcggggtaacgggaggtgggattactccctagtgctcttgcctcggtctcagaagcagagtaagatgcagtgcgttgggatctgtgctgtcaaaatggtgccgtgctgcagttagttaggacttagggttcgtgggacccagtgtgaggttctttcttgggtagcgccttcacgtggtctccaggcagctccctatgttagtctcaggggctacgatggttgaggggatctcctgtggctagaattgtaggtatctgtggtg-aaatgtgggctgctgggagtctccccctttcccttttcccacattggagagccgttcgagactcatatccgatcttggttgaacaggcggtctcatttccttctcctttgcttttggtgcttcctggtcacttctctgctgactttcggtgttctctcttagatgatctattcaacgtgtgattattgactggttattttggttactttacatggaagagccaagtaccagatgtatcaagtcagccatgttggagcctctccAGCTCCATTCAAGGGGCCTGTTTTGAGTTGGCCCTAGGCCTTTCCCCGTAAGCAAAATTTCTATAACATTGAAATTACTTGGGAAAAAAAGCTGTCAAAAGACTTTGAGGGTGttttgttttgttttgtttt-------------------------atggcgtctcacgctgtcacccaggctggaatacagtgg--caatctctgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcgtacacccccatgcccagctaatttatgtatttttagtagagatggagtttcaccatgctggccaggctggtctggaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgccgggattacaggcgtgagccactgcactcagccAACTTGGAGGTATTTTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29867265 2187 + 173848474 atttttttccctgatatctgttatctttggtacagttcttattcataacctaaattgttttcctgatttctttgtataatttttaaatactgtctggtatctcactgagctgttttagtatcaaaattttgaatactttgtctgggattgttgacatttcttttttattgggatctgttgctggagaattattgtgtccttatgttgatatctgcatacctagtataacagttacttttttaaattttttgaatttgctctcatggggaggactttttccagaagatgtatctaaggtgtagtttgg-gtagggttctctggttttgattctgggtgtgtacaatagtgcagtctctgtatgatttcttcatctgtaaacagtgtcagtggtgtctgttatttctttggtggcttaggatatggttgttagtggaggctgtgctgaagtcttgctaagaactgagatgccagttgggccagtcttcggcttccattggtagaatcagtgggatgagcatgtgtgtccttgggccccagggcagcatacactggcaccaatgttagcgggtttaggcaagacagttcttgtgcttccaagtggcttgcttggcttctgggaatggcatcagtagttcaggtatgaagttgaattcttgagccctttggcagtggatgtggtgtgggtgatggcagtagcagtggtgggacagccctctgggacccatgtagtccatgctgatattgccaatggctgtgacaggttgggcaggtcagttcccagatccacaggaggcacatgagtgtggatgtcagctgtggtgccaggggaaggttgagtggggctgacctcagatcccagtaggggtgctgaggagctaccagtgatggactgggctaagtgaccctcgggcccctgtacggtgtgctcaggttctgtgggtgggtgaagccaggctgagtagaccttcccacgggctccttggtggtgtatgaggcactggctacggtaggcaggggcagggggatccccaggccacagatggaatgctcagataggagtggtagtggctgttttgtggtcatggactggggaggactgggttgcttttcctgggaacaaccataggcaagaaactggggaggcatgggctttgctcatgcctctgccccacagtagttcatcatggcagcagttgcaggcagtgaaatttgtcgtcagggcaagtaaaaatgtgtagttgtccctctggtcggggtaacgggaggtgggattactccctagtgctcttgcctcggtctcagaagcagagtaagatgcagtgcgttgggatctgtgctgtcaaaatggtgccgtgctgcagttagttaggacttagggttcgtgggacccagtgtgaggttctttcttgggtagcgccttcacgtgctctccaggcagctccctatgttagtctcaggggctacgatggttgaggggatctcctgtggctagaattgtaggtatctgtggtg-aaatgtgggctgctgggagtctccccctttcccttttcccacattggagagccgttcgagactcatatccgatcttggttgaacaggcggtctcatttccttctcctttgcttttggtgcttcctggtcacttctctgctgactttcggtgttctctcttagatgatctattcaacgtgtgattattgactggttattttggttactttacatggaagagccaagtaccagatgtatcaagtcagccatgttggagcctctccAGCTCCATTCAAGGGGCCTGTTTTGAGTTGGCCCTAGGCCTTTCCCCGTAAGCAAAATTTCTATAACATTGAAATTACTTGGGAAAAAAAGCTGTCAAAAGACTTTGAGGGTGttttgttttgttttgtttt-------------------------atggcgtctcacgctgtcacccaggctggaatacagtgg--caatctctgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcgtacacccccatgcccagctaatttatgtatttttagtagagatggagtttcaccatgctggccaggctggtctggaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgccgggattacaggcgtgagccactgcactcagccAACTTGGAGGTATTTTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5670193 2192 +   6154872 tttttttttcctgatatctgt-atctttggtacagttcttactcataacataaattgttttcctgatttctttgtataattttcaaacactgtcttgtatctcactgagctgttttagtatcacaattctgaatactttgt-tgggattgtttacatttcttttttattgggatctgttgctggagaattattgtgtccttatgttgatatctgcatatctagtgtaacagttacttttttaaattttttgaatttgctctcatggggaggactttttccagaagatatatctaaggtgtagtttgg-gtagggttctctggttttgattctgggtgtgtacaatagtgcagtctctgtatgatttcttcatctgtaaacagtgtcagtggtgtctgttatttctttggtggcttaggatatggttgttagtggaggctgtgctgaagtcttgctaagaactgagatgccagttgggccagtcttcggcttccattggtagaatcagtgggatgagcatgtgtgtccttgggccccagggcagcatacactggcaccaatgttagcgggtttaggcaagccagttcttgtgcttccaagtggcttgcttggcttctgggaatggcatcagtagttcaggtatgaagttgaattcttgagccctttggcagtggatgtggtgtgggtgatggcagtagcagtggtgggactgccctctgggacccgtgtagtccatgctgatattggcaatggctgtgactggttgggcaggtcagttcccagatccacaggaggcatgtgagtgtggatgtcagctgtggtgccaggggaaggttgagtggggctgacctcagatcccaggaggggtgctgaggcgctaccagtgatggactgggctaagtgaccctcgggcccctgtacggtgtgctcaggttctgtgggtgggtgaagccaggctgagtagaccttcccatgggctccttggtggtgtatgaggcactggctatggtaggcaggggcagggggatccccaggccacagatggaatgctcagataggagtggtagtggctgttttgtggtcatggactggggaggactgggttgcttttcctgggaacaaccataggcaacaaactggggaggcatgggctttgctcatgcctctgccccacagtagttcatcatggtagcagttgcaggcagtgaaatttgtcctcagggcaagtaaaaatgtgtagttgtccctctggtcggggtaacgggaggtgggattactgcctagggctcttgcctcggtctcagaagcagagtaagatgcagtgcgttgggatctgtgctgtcaaaatggtgccgtgctgcagttagttaggacttacggttcgtgggagccagtgtgaggttctttcttgggtagcgccttcacgtggtctccaggcagctccctatgttagtctcaggggttacgatggttgaggggatctcctgtggctagaattgtaggtatctgtggtg-aaatgtgggctgctgggagtctctccctttcccttttcccacattggagagccgctcgagactcatatacgatcttggttgaacaggcggtctcatttccttctcctttgcttttggtgcttcctggtcacttctctgctgactttcggtgttctctcttagatgatctattcaacgtgtgattattgactggttattttggttactttacatggaagagccaagtaccagatgtatcaagtcagccatgttggagcctctccAGCTCCATTCAAGGGGCCTGTTTTGAGTTGGCCCTAGGCCTTTCCCCTTAAGCAAAATTTCTATAACATTGAAATTACTTGGGGAAAAAAGCTGTCAAAAGACTTTGAGGGtgttttgttttgttttgtttt--------------------gttttatggcgtctcacgctgtcacccaggctggaatacagtggcacaatctctgcctgccaggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgtatacccccatgcccagctaatttatgtatttttagtagagatggagtttcaccatgctggccaggctggtctggaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgccgggattacaggtgtgagccactgcactcagccAACTTGGAGGTATTTTGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29888179 2172 + 172585720 gttttttt-cctgatatctat-atctttggtacagttctcattcataacctgaattgttttcctgatttctttgtataatttttaaatactgtcttgtgtctcactgagctgttttagtatcaaaattttaaatactttttctcggattgtttacatttcgtttttattgggatctgttgctggagaatgattgtgtccttaagtcgatatttgcatatctagtgtaacagttacttcttttaattttctgaatttgctttcatggggaggactttttccagaag---tatcta-ggtgtaggttggggtagggttctctgattttgattctgggcgtgtacaatagtgccgtctctgtatgatttcttcatctataaacagcgccagtggtgtctg--atttctttggtggcttaggatatggttgttagtggagactgtgctgaagtcttgctaaaaactgagataccaggtgggccagtcttcgatttccattggtagaatcagtgggatgagcatgtgtgtccttgggctccagggcagcatacactggcaccaatgttagcgggtttaggcaagccaattcttgtgcttccaagtggcttgcctgggttctgggaatggcatcagtggttcaggtatg--gatgaattcttgagccctttggcagtggatgtggtgtgggtgatggcagtagcagtggtgggacagccctctgggacccatgttgtccatgctgatactggcaatggctgtgatgggttaggcaggtccgttcccagatccacaggaagcacacgagtgtggatgtcagctatggtgccaggggaaggttgagtggacctgaccttagatcccaggaggggtgctgaggtgctaccagtgatggactgggctaggtgaccctcaggcccctgtacagtgtgctcaggttctgtgggtgggcgaagccaggctgagcagaccttcccatgggctccttggcggtgtacgaggcactggctatggtaggcaggggcagggggatccccagaccacagatgaaatgctcagataggagtggtagtggctgttttgtggtcctggactggggggtattgggttgcttttcctgggagccccaataggcaagaaactggggaggcatgggctttgctcatgcctctgccccaccgtagctcatcatggcagcagttgcagacagtgaaatttgtcctcagggtgagtaaaattgtgtagttgtctctctggtcggggtaacgggaggtaggattactgcctagggctcttgcctcggtcccagaagcagagtaggattcagtgtgctgggatctgtgctgtcaaaatggtgctatgctgcagttagttaggacttagggttcgtgggacccagtgtgaggttctttctggggcaacgccttcacatggtctccaggcagctccctatgttagtctcaggggctacgatggtttaggggatctcctgtgactagaattgtaggtgtctgtggtgaaaatgtgggctgctgggaatctctcccttt-ccttttcccacattggagagctgctcgagactcacatccgatcttggttgaacaggctgtcttatttccttttcctttgcttttggtgcttcctggtcacttctctgctgacttccagtgttctctcttacatgatctattcaaggtgtgattattgactggttattttggatactttacgagaaagagtcaaataccagatgtatcaagtcagccatgttggagcctctccAGTTCCATTCAAGGGGCCTGTTCTGAGTTGGCAGTAGGCCTTTCCTCGTAAGCAAAATTTCTATAACATTGAAATTACTTAGGGAAAAAAGCTGTCAATACACTTTGATGGtttttcgttttg-tttttttc-------------------------atggcgtcttactccctcagccaggctggaatacagtggcggaatctctgcctcccaggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgtacaccaccaagcccagctaatttatgtgtttttaatagagatggagtttcatcacattggccaggctggtctggaactcatgacctcaagt-------ctccctcggcctcccaaagtgctgggattagaggtgtgagtcactgcacccaaccAGCTTGGAGGTATTTTGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29551836 2172 - 170955103 gttttttt-cctgatatctat-atctttggtacagttctcattcataacctgaattgttttcctgatttctttgtataatttttaaatactgtcttgtgtctcactgagctgttttagtatcaaaattttaaatactttttctcggattgtttacatttcgtttttattgggatctgttgctggagaatgattgtgtccttaagtcgatatttgcatatctagtgtaacagttacttcttttaattttttgaatttgctttcatggggaggactttttccagaag---tatcta-ggtgtaggttggggtagggttctctgattttgattctgggcgtgtacaatagtgccgtctctgtatgatttcttcatctataaacagcgccagtggtgtctg--atttctttggtggcttaggatatggttgttagtggagactgtgctgaagtcttgctaaaaactgagataccaggtgggccagtcttcgatttccattggtagaatcagtgggatgagcatgtgtgtccttgggctccagggcagcatacactggcaccaatgttagcgggtttaggcaagccaattcttgtgcttccaagtggcttgcctgggttctgggaatggcatcagtggttcaggtatg--gatgaattcttgagccctttggcagtggatgtggtgtgggtgatggcagtagcagtggtgggacagccctctgggacccatgttgtccatgctgatattggcaatggctgtgatgggttaggcaggtccgttcccagatccacaggaagcacacgagtgtggatgtcagctatggtgccaggggaaggttgagtggacctgacctcagatcccaggaggggtgctgaggtgctaccagtgatggactgggctaggtgaccctcaggcccctgtacagtgtgctcaggttctgtgggtgggcgaagccaggctgagcagaccttcccatgggctccttggcggtgtacgaggcactggctatggtaggcaggggcagggggatccccagaccacagatgaaatgctcagataggagtggtagtggctgttttgtggtcctggactggggggtatcgggttgcttttcctgggagccccaataggcaagaaactggggaggcatgggctttgctcatgcctctgccccacagtagctcatcatggcagcagttgcaggcagtgaaatttgtcctcagggtgagtaaaattgtgtagttgtctctctggtcggggtaacgggaggtaggattactgcctagggctcttgcctcggtcccagaagcagagtaggattcagtgtgctgggatctgtgctgtcaaaatggtgctatgctgcagttagttaggacttagggttcgtgggacccagtgtgaggttctttctggggcaacgccttcacatggtctccaggcagctccctatgttagtctcaggggctacgatggttgaggggatctcctgtgactagaattgtaggtgtctgtggtgaaaatgtgggctgctgggaatctctcccttt-ccttttcccacattggagagctgctcgagactcacatccgatcttggttgaacaggctgtcttatttccttttcctttgcttttggtgcttcctggtcacttctctgctgacttccagtgttctctcttacatgatctattcaaggtgtgattattgactggttattttggatactttacgagaaagagtcaaataccagatgtatcaagtcagccatgttggagcctctccAGTTCCATTCAAGGGGCCTGTTCTGAGTTGGCAGTAGGCCTTTCCTCGTAAGCAAAATTTCTATAACATTGAAATTACTTAGGGAAAAAAGCTGTCAATACACTTTGATGGtttttcgttttg-tttttttc-------------------------atggcgtcttactccctcagccaggctggaatacagtggcggaatctctgcctcccaggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgtacaccaccaagcccagctaatttatgtgtttttaatagagatggagtttcatcacattggccaggctggtctggaactcatgacctcaagt-------ctccctcggcctcccaaagtgctgggattagaggtgtgagtcactgcacccaaccAGCTTGGAGGTATTTTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2537636 2170 -   2996164 gttttttt-cctgatatctat-atctttggtacagttctcattcataacctgaattgttttcctgatttctttgtataatttttaaatactgtcttgtgtctcactgagctgttttagtatcaaaattttaaatactttttctcagattgtttacatttcgtttttattgggatctgttgctggagaatgattgtgtccttaagtcgacatttgcatatctagtgtaacagttacttcttttaattttttgaatttgctttcatggggaggactttttccagaag---tatcta-ggtgtaggttggggtagggttctctgattttgattctgggcgtgtacaatagtgtcgtctctgtatgatttcttcatctataaacagcgccagtggtgtctg--atttctttggtggcttaggatatggttgttagtggagactgtgctgaagtcttgctaaaaactgagatgccaggtgggccagtcttcgatttccattgatagaatcagtgggatgagcatgtgtgtccttgggctccagggcagcatacactggcaccaatgttagcaggtttaggcaagccaattcttgtgcttccaagtggcttgcctgggttctgggaatggcatcagtggttcaggtatg--gatgaattcttgagccctttggcagtggatgtggtgtgggtgatggcagtagcagtggtgggacagccctctgggacccatgttgtccatgctgatattggcaatggctgtgatgggttgggcaggtccgttcccagatccacaggaagcacacgagtgtggatgtcagctatggtgccaggggaaggttgagtggacctgacctcagatcccaggaggggtgctgaggtgctaccagtgatggactgggctaggtgaccctcaggcccctgtacagtgtgctcaggttctgtgggtgggcgaagccaggctgagcagaccttcccatgggctccttggtggtgtacgaggcactggctatggtaggcaggggcagggggatccccagatcacagatgaaatgctcagataggagtggtagtggctgttttgtggtcctggactggggggtattgggttgcttttcctgggagccccaataggcaagaaactggggaggcatgggctttgctcatgcctctgccccacagtagctcatcatggcagcagttgcaggcagtgaaatttgtcctcagggtgagtaaaaatgtgtagttgtctctctggtcggggtaacaggaggtgggattactgcctagggctcttgcctcggtcccagaagcagagtaggattcagtgtgctgggatctgtgctgtcaaaatggtgctatgctgcagttagttaggacttagggttcgtgggacccagtgtgaggttctttctggggcaacgccttcacatggtctccaggcagctccctatgttagtctcaggggctacgatggttgaggggatctcctgtgactagaattgtaggtgtctgcggtgaaaatgtgg---gctgggaatctctcccttt-ccttttcccacattggagagccgctcgagactcacatccgatcttggttgaacaggctgtcttatttccttgtcctttgcttttggtgcttcctggtcacttctctgctgacttccagtgttctctcttacatgatctattcaaggtgtgattattgactggttattttggatactttacgagaaagagtcaaataccagatgtatcaagtcagccatgttggagcctctccAGTTCCATTCAAGGGGCCTGTTCTGAGTTGGCAGTAGGCCTTTCCTCGTAAGCAAAATTTCTATAACATTGAAATTACTTAGGGAAAAAAGCTGTCAATACACTTTGATGGttttttgttttgttttttttc-------------------------atggcgtcttactccctcagccaggctggaatacagtggcggaatctctgcctcccaggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgtacaccaccaagcccagctaatttatgtgtttttaatagagatggagtttcaccacgttggccaggctggtctggaactcatgacctcaagt-------ctgcctcggcctcccaaagtgctgggattagaggtgtgagtcactgcacccaaccAGCTTGGAGGTATTTTGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     303234 2172 +    766320 gttttttt-cctgatatctat-atctttggtacagttctcattcataacctgaattgttttcccgatttctttgtataatttttaaatactgtcttgtgtctcactgagctgttttagtatcaaaattttaaatactttttctcggattgtttacatttcgtttttattgggatctgttgctggagaatgattgtgtccttaagtcgatatttgcaaatctagtgtaacagttacttcttttaattttttgaatttgctttcacggggaggactttttccagaag---tatcta-ggtgtaggttggggtagggttctctgattttgattctgagcgtgtacaatagtgccgtcgctgtatgatttcttcatctgtaaacagcgccagtggtgtctg--atttctttggtggcttaggatatggttgttagtggagactgtgctgaagtcttgctaaaaactgagatgccaggtgggccggtcttcgatttccattggtagaatcagtgggatgagcttgtgtgtccttgggcctcagggcagcatacactggcaccaatgttagcgggtttaggcaagccaattcttgtgcttcccagtggcttgcttgggttctgggaatggcatcagtggttcaggtatggagatgaattcttgagccctttggcagtggatgtggtgtgggtgatggcagtagcagtggtgggacagccctctgggacccatgttgtccatgatgatattggcaatggctgtgacgggttgggctggtcagttcccggatccacaggaagcacacgagtgtggatgtcagctgtggtgccaggggaaggttgagtggacctgacctcagatcccaagaggggtactgaggtgctaccagtgatggactagggtaggtgaccctcaggcccctgtacagcgtgcttagattctatgggtgggcgaagccaggctgagcagaccttcccatgggctccttggcggtgtatgaggcactggctatggtaggcaggggcagtggcatccccagaccacagatgaaatgctcagataggagtggtagtggctgttttgtggtcctggactggggagtactgggttgcttttcctgggagcagccataggcaagaaactggggaggcatgggctttgctcatgcctctgccccacagtagctcatcatggcagcagttgcaggcagtgaaatttgtcctcagcgtgagtaaaattgtgtagttgtctctctggtcggggtaacaggaggtgggattattgcctacggctcttgcctcggtcccagaagcagagtaggattcagtgtgctggaatctgtgctgtcaaaatggtgctgtgctgcagttagttaggacttagggttcgtgggacccagtgtgaggttctttctggggcaacgccttcacatggtctccaggcagctccctatgttagtctcaggggctacgatggttgaggggatctcctgtgactagaattgtaggtgtctgcggtgaaaatgtgg---gctgggaatctctcccttt-ccttttcccacattggagagccgctcaagactcacatccgatcttggttgaacgggctgtcttatttccttttcctttgctttcggtgcttcctggtcacttctctgctgacttccagtgttctctcttagatgatctattcaaggtgtgattattgactggttattttggatactttacgagaaagagtcaaataccagatgtatcaagtcagccatgttggagcctctccAGTTCCATTCAAGGGGCCTGTTCTGAGTTGGCCGTAGGCCTTTCCCCATAAGCAAAATTTCGATAACATTGAAATTACTTAGGAAAAAAAGCTGTCAATACACTTTGATGGtttttcgttttgttttgtttt-------------------------atagcgtctcactccctcagccaggctggaatacagtggcggaatctctgcctcccaagttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgtacatcaccaagcccagctaatttatgtatttttaatagagatggagtttcaccacgttggccaggctggtctggaactcatgacctcaagt-------ctgcctcagcctcccaaagtgctgggattagaggcgtgagtcactgcacccaaccAGCTTGGAGGTATTTTGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28791659 2175 -  71996105 gttttttt-cctgatatctat-atctttggtacagttctcattcataacctgaattgttttcctgatttctttgtataatttttaaatactgtcttgtgtctcactgagctgttttagtatcaaaattttaaatactttttctgggattgtttacatttcttttttattgggatctgttggtggagaattatcgtgtccttatgtcgatatttgcatatctagtgtaacagttacttcttttaattttttgaatttgctttcatggggaggactttttccagaag---tatctatggtgtaggttggagtagggttctctggttttgattctgggcgtgtacaatagtgcagtccctgtatgatttcttcatctgtaaacagcaccagtggtgtctg--atttctttagtggcttaggatatggttgttaatgaagactgtgctgaagtcttgctaaaaactgagatgccaggtgggccagtcttcgatttccattggtag-atcagtgggacgggcttgtgtgtccttgggtcccagggcagcatacactggcaccaatgttagcgggtttaggcaagccaattcttgtgcttccaagtggcttgcttgggttctgggaatggcatcagtggttcaggtatggagatgaattattgagccctttggcagtggatgtggtgtgggtgatggcagtagcagtggcgggacagccctctgggacccatgttgtccatgctgatattggcaatggctgtgatgggttgggcaggtcagttcccagatccacaggaagcacacgagtgtggatgtcagctgtggtgccaggggaaggttgagtggacctgacctcagatcccaggaggggtgctgaggtgctaccagtgatggactgggctaggtgatcctcaagcccctgtacagcgtgcttagattctatgggtgggcgaagccaggctgagcagaccttcccatgggctccttggcggtgtatgaggcactggctatggtaggcaggggcagggggatccccagaccacagatgaaatgctcagataggagtggtagtggctgttttgtggtcctggactggggagtactgggttgcttttcctgggagcagtcataggcaagaaactggggaggcatgggctttgctcatgcctctgccccacagtagctcatcatggcagcagttgcaggcagtgaaatttgtcctcagggtgagtaaaaacgtgtagttgtctctctggtcagggtaacaggaggtgggattactgcctagggctcttgcctcggtcccagaagcagagtaggattcagtgcgctgggatctgtgctgtcaaaatggtgctgtgctgcagttagttaggacttagggttcgcgggacccagtgtgaggttctttctgaggcaacgccttcacatggtctccaggcagctccctatgttagtctcaggggctacgatggttgaggggatctcctgtgactagaattgtaggtgtctgtggtgaaaatgtgggctgctgggaatctctcccttt-ccttttcccacattggagaaccactcgagactcacatccgatcttggttgaacaggctgtcttatttccttttcctttgcttttggtgcttcctggtcacttctctgctgacttccagtgttctctcttagatgatctattcaaggtgtgattattgactggttattttggatactttacgagaaagagtcaaataccagatgtatcaagtcagccatgttggagcctctccAGTTCCATTCAAGGGGCCTGTTCTGAGTAGGCCGTAGGCCTTTCCCCATAAGCAAAATTTCTATAACATTGAAATTGCTTAGGAAAAAAAGCTGTCAATACACTTTGATGGttttttgttttgttttgtttt-------------------------atggcgtctcactccctcagccaggctggaatacagtggcggaatctctgcctcccaagttcaagcgattctcctgcctcagcctcctaagtagctgggattacaggcgtacatcaccaagcccagctaatttatgtatttttaatagagatggagtttcaccacgttggccaggctggtctggaactcatgacctcaagt-------ctgcctcggccttccaaagtgctgggattagaggtgtgagtcactgcacccaaccAGCTTGGAGGTATTTTGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     273697 2174 -    352859 gttttttt-cctgatatctat-atctttggtacagttctcattcataacctgaattgttttcctgatttctttgtataatttttaaatactgtcttgcgtctcactgagctgttttagtatcaaaattttaaatactttttctcggattgtttacatttcgtttttattgggatctgttgctggagaatgattgtgtccttaagtcgatatttgcaaatctggtgtaacagttacttcttttaattttttgaatttgctttcacggggaggactttttccagaag---tgtctatggtgtaggttggagtagggttctctgattttgattctgcgcatgtacaatagtgccgtctctgtatgatttcttcatctgtaaacagcgccagtggtgtctg--atttctttggtggcttaggatatggttgttagtggagactgtgctgaagtcttcctaaaaactgagatggcaggtgggccagtcttcgatttccattggtagaatcagtgggatgaacatgtgtgtccttgggcctcagggcag-atacactggcaccaatgttagcgggtttaggcaagccaattcttgtgcttccaagtggcttgcttgggttctgggaatggcatcagtggttcaggtatggagatgaattcttgagccctttggcagtggatgtggtgtgggtgatggcagtagcagtggtgggacagccctctgggactcatgttgtccatgctgatattggcaatggctgtgacgggttgggccggtcagttcccggatccacaggaagtacacgagtgtggatgtcagctgtggtgccaggggaaggttgagtggacctgacctcagatcccaggagtggtgctgaggtgctaccagtgatggactaggctaggtgaccctcaggcccctgtacagcgtgcttagattctatgggtgggcgaagccaggctgagcagaccttcccatggcctccttggcggtgtatgaggcactggctatggtaggcaggggcaggggcatccccagaccacagatgaaatgctcagataggggtggtagtgcctgttttgtggtcctggactggggagtactgggttgc-tttcctgggagcagccataggcaagaaactggggaggcatgggctttgctcatgcctctgccccacagtagctcatcatggcagcagttgcaggcagtgaaatttgtcctcagggtgagtaaaaatgtgtagttgtctctctggtcagggtaacaggaggtgggattattgcctacggctcttgcctcggtcccagaagcagagtaggattcagtgtgctgggatctgtgctgtcaaaatggtgctgtgctgcagttagttaggacttagggttcgtgggacccagtgtgaggttctttctggggcaacgccttcacatggtctccaggcagctccctatgttagtctcaggggctacgatggttgaggggatctcctgtgactagaattgtaggtgtctgtggtgaaaatgtgggctgctgggaatctctcccttt-ccttttcccacattggagagccgctcgagactcacatccgatcttggttgaacaggctgtcttatttgcttttcctttgcttttggtgcttcctggtcacttctctgctgacttccagtgttctctcttagatgatctattcaaggtgtgattattgactggtgattttggatactttacgtgaaagggtcaaataccagatgtatcaagtcagccatgttggagcctctccAGTTCCATTCAAGGGGCCTGTTCTAAGTTGGCCGTAGGCCTTTCCCCATAAGCAAAATTTCTATAACATTGAAATTACTTAGGAAAAAAAGCTGTCAGTACACTTTGATGGttttttgttttgttttgtttt-------------------------atggcgtctcactccgtcagccaggccggaatatagtggcggaatctctgcctcccaagttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgtacatcaccaagcccagctaatttatgtatttttaatagagatgaagtttcaccacgttggccaggctggtctggaactcatgacctcaagt-------ctgcctcggcctcccaaagtgctgggattagaggtgtgagtcactgcacccaaccAGCTTGGAGGTATTTTGGG
i manLeu1.NW_012099655v1   C 0 C 0
e proCoq1.NW_012152574v1     401917 9408 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2068736 13105 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=1209103.000000
s hg38.chr6_GL000254v2_alt   657822 303 +   4827813 G----AAAAAAAAGAAGTAATGATTTTTCCTAACTTATGAGATATTAAGACCTACAATAACATCATATTACTTAAATTACAGCTT---------------------ATTCAATGGAA-AAAATAGTAAGTGGAGAAACAAACCATGTATTGAGGGGAACTTGGAATAGTATAAAGATGGCCTCACAAATCGATGAAGAAGGAATGGTTA---GTCGGTCTACATAGAGACA-ACCAGAACCAAGACTAGCTGATTATCTCACAGGATATGTAAATATAACCTCTAGAAGACTAGAGTCCTAAATGACAAATATAAAACTCTAAATCTAATTAA
s panTro5.chr6             29631249 302 + 175400573 G----GAAAAAA-GAAGTAATGATTTTTCCTAACTTATGAGATATTAAGACCTACAATAACATCATATTACTTAAATTACAGCTT---------------------ATTCAATGGAA-AAAATAGTAAGTGGAGAAACAAACCATGTATTGAGGGGAACTTGGAATAGTATAAAGATGGCCTCACAAATCGATGAAGAAGGAATGGTTA---GTCTGTCTACATAGAGACA-ACCAGAACCAAGACTAGCTGATTATCTCACAGGATATGTAAATATAACCTCTAGAAGACTAGAGTCCTAAATGACAAATATAAAACTCTAAATCTAATTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29869452 303 + 173848474 G----GAAAAAAAGAAGTAATGATTTTTCCTAACTTATGAGATATTAAGACCTACAATAACATCATATTACTTAAATTACAGCTT---------------------ATTCAATGGAA-AAAATAGTAAGTGGAGAAACAAACCATGTATTGAGGGGAACTTGGAATAGTATAAAGATGGCCTCACAAATCGATGAAGAAGGAATGGTTA---GTCTGTCTACATAGAGACA-ACCAGAACCAAGACTAGCTGATTATCTCACAGGATATGTAAATATAACCTCTAGAAGACTAGAGTCCTAAATGACAAATATAAAACTCTAAATCTAATTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5672385 302 +   6154872 G----AAAAAAAAGAAGTAATGATTTTTCCTAACTTATGAGATATTAAGACCTACAATAACATCATATTACTTAAATTACAGCTT---------------------ATTCAATGGAA-AAAATAGTAAGTGGAGAAACAAACCATGTATTGAGGGGAACTTGGAATAGTATAAAGATGGCCTCACAAATCGATGAAGAAGGAATGGTTA---GTCTGTCTACATAGAGACA-ACCAGAACCAAGACTAGCTGATT-TCTCACAGGATATGTAAATATAACCTCTAGAAGACTAGAGTTCTAAATGACAAATATAAAACTCTAAATCTAATTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29890351 306 + 172585720 G-AAAAAAAAAAAGGAGTAATGATTTTTCCTAACTTATGAGATATTAGGCCCTACAATAACATCATATTAATTAAAATATGGCTT---------------------ATTCAATGGAA-AACATAGTTAGTGGAGAAGCAGACCATGTATTGAGGGGGACTTGGAATAGTATAAAGGTTGCCTCACAAAACTATAAAGAAGGAAGGATTA---GTCTATCTACATAGAGACA-AGCAGAACCAAGACTAGTTGATTATCTCATAGGATATGTAAATATAACCTCTAGAAGACTAGAGTCCTAAATGACAAATATAAAACTCTAAATCTAATTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29554008 306 - 170955103 G-AAAAAAAAAAAGGAGTAATGATTTTTCCTAACTTATGAGATATTAGGCCCTACAATAACATCATATTAATTAAAATACGGCTT---------------------ATTCAATGGAA-AACATAGTTAGTGGAGAAGCAGACCATGTATTGAGGGGGACTTGGAATAGTATAAAGGTTGCCTCACAAAACTATAAAGAAGGAAGGATTA---GTCTATCTACATAGAGACA-AGCAGAACCAAGACTAGTTGATTATCTCATAGGATATGTAAATATAACCTCTAGAAGACTAGAGTCCTAAATGACAAATATAAAACTCTAAATCTAATTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2539806 305 -   2996164 G--AAGAAAAAAAGGAGTAACGATTTTTCCTAACTTATGAGATATTAGGCCCTACAATAACATCATATTAATTAAAATACGGCTT---------------------ATTCAATGGAA-AACATAGTTAGTGGAGAAGCAGACCATGTATTGAGGGGGACTTGGAATAGTATGAAGGTTGCCTCACAAAACTATGAAGAAGGAAGGATTA---GTCTATCTACATAGAGACA-AGCAGAACCAAGACTAGTTGATTATCTCATAGGATATGTAAATATAACCTCTAGAAGACTAGAGTCCTAAATGACAAATATAAAACTCTAAATCTAATTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     305406 306 +    766320 G-AAAAAAAAAAAGGAGTAACGATTTTTCCTAACTTATGAGATATTAGGCCCTACAATAACATCATATTAATTAAAATACGGCTT---------------------ATTCAATGGAA-AACATAGTTAGTGGAGAAGCAGACCATGTATTGAGGGGGACGTGGAATAGTATAAAGATTGCCTCACAAAACTATGAAGAAGGAAGGATTA---GTCTATCTACATAGAGACA-AGCAGAACCAAGACTAGTTGATTATCTCATAGGATatgtaaatataacctctagaagactagaatcctaaatgacaaatataaaactctaaatctaaTTAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28793834 302 -  71996105 G-----AAAAAAAGGAGTAACGATTTTTCCTAACTTATGAGATATTAGGCCCTACAATAACATAATAATAATTAAAATACGGCTT---------------------ATTCAATGGAA-AACATAGTTAGTGGAGAAGCAGACCATGTATTGAGGGGGACTTGGAATAGTATAAAGATTGCCTCACAAAACTATGAAGAAGAAAGGATTA---GTCTATCTACATAGAGACA-AGCAGAACCAAGACTAGTTGATTATCTCATAGGATATGTAAATATAACCTCTAGAAGACTAGAGTCCTAAATGACAAATATAAAGCTCTAAATCTAATTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     275871 307 -    352859 GGGGGAAAAAAAAGGAGTAACGATTTTTCCTAACTTATGAGATATTAGGCCCTACAATAACATCATATTAATTAAAATACGGCTT---------------------ATTCAATGGAA-AACATAGTTAGTGGAGAAGCAGACCATGTATTGAGGGGGACTTGGAATAGTATAAAGATTGCTTCACAAAACTATGAAGAAGGAAGGATTA---GTCTATCTACATAGAGACA-AGCAGAACCAAGACTAGTTGATTATCTCATAGGATATGTaaatataacctctagaagactagaatcctaaatgacaaatataaaactctaaatctaaTTAA
i manLeu1.NW_012099655v1   C 0 C 0
s dasNov3.JH569098           138873 321 -    254539 ----gaagaagaataaacagtgg-----acccacctataagatattaagactcacaataaaggcat--cagttaatataaagtttttggctggcataaaaagaaaaaatcaattgaataaagtagaatatggggtaacaggttgaatatttatggagatgtgg-atactttagcaatgacgtcacaaatttgtgaagaatagtTAGTTAGTTGTCTGACTCCACAGAGACAGAGTAGCCCCAATTCTTGGTGATTATCTCACAGCATAAGTCAGCTAATCTTTAAGAGGGCTGGAGAGATTAATAACAAATCTAAAATTCTAAGCCTAATAAA
i dasNov3.JH569098         N 0 I 112
e proCoq1.NW_012152574v1     401917 9408 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2068736 13105 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=2170428.000000
s hg38.chr6_GL000254v2_alt   658125 571 +   4827813 CAG-----------------AACCAGTTA----------------------------CATAATCTTTAAGTT----------TCAATGCAAGATAAAAA--------------------------------------------------------ATGA------------------------------------------TAAAATTGAAGTGGGGGACATTTTGAAAAAATGGAAATTACATTGCAGTGATccctaaaactaaagagccttattttgaatcctagttt-cacaatccattgcaaggaaaaggaaactttacttaaatcctttgagccttggttttcttgtagtaa---aggaataattttaatactt-ttacattgggtttttgtgagaattaaatgagctaatatatgtgaagaactcagaacaataacttatacataat----------gagcatgcaata-aatgttatttattTATAATATATTAGCAGtata----------------------------------taaaataaggaattatttgtatgtggaatggc-tcatacctataatcccaaaattttgggggg-------atgatattggtggattgcttgagaccaggaattagagg-----------ctgcagtgagttatgattgcatcactgcactccagcctggatgacagagc---aagactctgactcaaaacaag-aaaaaaaattaaagatttaaaaaa--aaaaaCAAAATTA-AAAAATTAAAATAAGATATTATT
s panTro5.chr6             29631551 568 + 175400573 CAG-----------------AACCAGTTA----------------------------CATAATCTTTAAGTT----------TCAATGCAAGATAAAAA--------------------------------------------------------ATGA------------------------------------------TAAAATTGAGGTGGGGGACATTTTGAAAAAATGGAAATTACATTGCAGTGATccctaaaactaaagagccttattttgaatcctagttt-cacaatccattgcaaggaaaaggaaaatttacttaaatcctttgagccttggttttcttgtagtaa---aggaataattttaatactt-ttacattgggtttttgtgagaattaaatgagctaatatatgtgaagaactcagaacaataacttatacataat----------gagcatgcaata-aatgttatttattTATAATATATTAGCAGtata----------------------------------taaaataaggaattatttgtatgtggaatggc-tcatacctataatcccaacattttgggggg-------atgatattggtggattgcttgagaccaggaattagagg-----------ctgcagtgagttatgattgcatcaccgcactccagcctggatgacagagc---aagactctgactcaaaacaat-aaaaaaaattaaagatt---aaaa--aaaaaCAAAATTA-AAAAATTAAAATAAGATATTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29869755 568 + 173848474 CAG-----------------AACCAGTTA----------------------------CATAATCTTTAAGTT----------TCAATGCAAGATAAAAA--------------------------------------------------------ATGA------------------------------------------TAAAATTGAGGTGGGGGACATTTTGAAAAAATGGAAATTACATTGCAGTGATccctaaaactaaagagccttattttgaatcttagttt-cacaatccattgcgaggaaaaggaaaatttacttaaatcctttgagccttggttttcttgtagtaa---aggaataattttaatactt-ttacattgggtttttgtgagaattaaatgagctaatatatgtgaagaactcagaacaataacttatacataat----------gagcatgcaata-aatgttatttattTATAATATATTAGCAGtata----------------------------------taaaataaggaattatttgtatgtggaatggc-tcatacctataatcccaacattttgggggg-------atgatattggtggattgcttgagaccaggaattagagg-----------ctgcagtgagttatgattgcatcactgcactccagcctggatgacagagc---aagactctgactcaaaacaag-aaaaaaaattaaagatt---aaaa--aaaaaCAAAATTA-AAAAATTAAAATAAGATATTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5672687 564 +   6154872 CAG-----------------AACCAGTTA----------------------------CATAATCTTTAAGTT----------TCAATGCAAGATAAAAA--------------------------------------------------------ATGA------------------------------------------TAAAATTGAAGTGGgggacattttgaaaaaatggaaattgcattgcagtgatccctaaaactaaagagccttattttgaatcctagttt-cacaatccattgcaaggaaaaggaaaatttgcttaaatcctttgagcctcggttttcttgtagtaa---aagaataattttaatactt-ttacactgggtttttgtgagaattaaatgagctaatatatgtgaagaactcagaacaataacttatacataat----------gagcatgcaata-aatgttatttattTATAATATATTAGCAGtata----------------------------------taaaataaggaattatttgtatgtggaatggc-tcatacctataaacccaacattttgggggg-------atgatatgggtggattgcttgagaccagtaattagagg-----------ctgcagtgagttatgattgcatcactgcactccagcctggatgacagagc---aagactctgactcaaaacaag-aaaaaaaattaaagatt---ttaa--aa----aaaaTTA-AAAAATTAAAATAAGATATTATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29890657 562 + 172585720 CAG-----------------GACCAGTTA----------------------------CATAACCTTTACGGC----------TCAATGCAAGATAAAAA--------------------------------------------------------ATGA------------------------------------------TAAAATTGAGGTGGgggacattttgagaaaatggaaattacattgcagtgattcctgaaactaaagagccttaatttgaatcctagttt-cacaatccattgcaaggaaaaagaaaatttacttaaatcctttgagcctcggttttcttgtagtaa---aggaataattttaatactt-ttacattggattattgtgagaattaaatgaactaatatatgtgaagaatgcagaacaataacttatacataat----------gagcatgcaata-aatg----ttatttataatGTATTTGCAGtata----------------------------------taaaataaggaattatttgtatatggaatggc-tcatacctataatcccaacatttagggagg-------atgatatgggaggattgctcgaggccaggaattagagg-----------ctgcagtgagttatgattgcatcactgcactccagcctggatgacggagc---aagactctgactcaaaacaag-aaaaaaaattaaagatt---aaaa--aaaaaCAAAATTT-AAAAATTAAAATAAG--ATTATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29554314 562 - 170955103 CAG-----------------GACCAGTTA----------------------------CATAACCTTTACGGC----------TCAATGCAAGATAAAAA--------------------------------------------------------ATGA------------------------------------------TAAAATTGAGGTGGgggacattttgagaaaatggaaattacattgcagtgattcctgaaactaaagagccttaatttgaatcctagttt-cacaatccattgcaaggaaaaagaaaatttacttaaatcctttgagcctcggttttcttgtagtaa---aggaataattttaatactt-ttacattggattattgtgagaattaaatgaactaatatatgtgaagaatgcagaacaataacttatacataat----------gagcatgcaata-aatg----ttatttataatGTATTTGCAGtata----------------------------------taaaataaggaattatttgtatatggaatggc-tcatacctataatcccaacatttagggagg-------atgatatgggaggattgctcgaggccaggaattagagg-----------ctgcagtgagttatgattgcatcactgcactccagcctggatgacggagc---aagactctgactcaaaacaag-aaaaaaaattaaagatt---aaaa--aaaaaCAAAATTT-AAAAATTAAAATAAG--ATTATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2540111 562 -   2996164 CAG-----------------GACCAGTTA----------------------------CATAACCTTTACAGC----------TCAATGCAAGATAAAAA--------------------------------------------------------ATGA------------------------------------------TAAAATTGAGGTGGGGGACATTTTGAGAAAATGGAAATTACATTGCAGTGATccctgaaactaaagacccttaatttgaatcctagttt-cacaatccattgcaaggaaaaagaaaatttacttaaatcctttgagcctcggttttcttgtagtaa---aggaataattttaatactt-ttacattggattattgtgagaattaaatgaactaatatatgtgaagaatgcagaacaataacttatacataat----------gagcatgcaata-aatg----ttatttataatGTATTTGCAGtata----------------------------------taaaataaggaattatttgtatatggaatggc-tcatacctataatcccaacatttagggagg-------atgatatgggaggattacttgaggccaggaattagagg-----------ctgcagtgagttatgattgcatcactgcactccagcctggatgacggagc---aagactctgactcaaaacaag-aaaaaaaattaaagatt---aaaa--aaaaaCAAAATTT-AAAAATTAAAATAAG--ATTATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     305712 555 +    766320 CAG-----------------GACCAGTTA----------------------------CATAACCTTTACGGC----------TCAATGCAAGATAAAAA--------------------------------------------------------ATGA------------------------------------------TAAAATTGAGGTGGGGGACATTTTGAGAAAATGGAAATTACATTACAGTGATccctgaaactaaagagccttaatctgaatcctagttt-cacaatccattgcaaggaaaaagaaaatttacttaaatcctttgagcctcggttttcttgtagtaa---aggaataattttaatactt-ttacattggattattgtgagaattaaatgaactaatatatgtgaagaatgcagaacaataacttatacataat----------gagcatgcaata-aatg----ttatttataatGTATTTGCAGtata----------------------------------taaaataaggaattatttgtatatggaatggc-tcatacctataattccaacatttagggagg-------atgatatgggaagattgctcgaggccgggaattagagg-----------ctgcagtgagttatgattgcatcactgcactccagcctggatgacggagc---aagactctgactcaaaacaagaaaaaaaaattaaagatt---aaaa--aaa-----------CAAAATTAAAATAAGGTATTATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28794136 562 -  71996105 CAG-----------------GACCAGTTA----------------------------CATAACCTTTACGGC----------TCAATGCAAGATAAAAA--------------------------------------------------------ATGA------------------------------------------TAAAATTGAGGTGGgggacattttgagaaaatggaaattacattgcagtgatccctgaaactaaagagccttaatttgaatcctagttt-cacaatccattgcaaggaaaaagaaaatttacttaaatcctttgagcctcggttttcttgtagtaa---aggaataattttaatactt-ttacattgggtttttgtgagaattaaatgaactaatatatgtaaagaacgcagaacaataacttatgcataac----------gagcatgcaata-aatg----ttatttataatGTATCTGCAGtata----------------------------------taaaataaggaattatttgtatatggaatggc-tcatacctataatcgcaacatttagggagg-------atgatatgggaggattgcttgaggccaggaattagagg-----------ctgcagtgagttatgattgcatcactgcactccagcctggatgacggagc---aagactctgactcaaaacaag-aaaaaaaattaaagatt---aaaa--aaa--CAAAATTT-AAAAATTAAAATAAGGTATTATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     276178 560 -    352859 CAG-----------------GACCAGTTA----------------------------CATAACCTTTACGGC----------TCAATGCAAGATAAAAA--------------------------------------------------------ATGA------------------------------------------TAAAATTGAGGTGGgggacattttgagaaaatggaaattacattgcagtgatccctgaaactaaagagccttaatttgaatcctagttt-cacaatccattgaaaggaaaaagaaaatttacttaaatcctttgagcctcggttttcttgtagtaa---aggaataattttaatactt-ttacattggattattgtgagaattaaatgaactaatatatgtgaagaatgcagaacaacaac--atacataat----------gagcatgcaaca-aatg----ttatttataatGTATTTGCAGtata----------------------------------taaaataaggaattatttgtatatggaatggc-tcatacctataatcccaacatttagggagg-------atgatatgggaggattgctcgaggccaggaattagagg-----------ctgcagtgagttatgattgcatcactgcacttcagcctggatgacggagc---aagactctgactcaaaacgag-aaaaaaaattaaagctc---aaaa--aaa--caaaATTA-AAAAATTAAAATAAGGTATTATT
i manLeu1.NW_012099655v1   C 0 C 0
s dasNov3.JH569098           139306 771 -    254539 cagaggtcacggtcataagcaaccagttaggtcaaggttcaggaagtcaaccTGGCTAATAAAACTTAAGTCCATATTGGTATAAATTTAGGAGAAAAATTACTTCATAAACAACATCTGAATGAAAATAATGTGAAGAAAGAAAATTCTTAGTCATGATTCATCATCATAATGGATTTGTAATCAACAAGGGAAACAAGTTAAGATTGAGAT-GGTGATACTTGAAGAGAATGG--ATGACCTGGTGGGTACCTCTAAAACTAGAAAGGTGCAATTACAGTCCTAGTTTACACAATTGCTCTCAAGAAACTGAGGTATttacttaacttctctgagcctcggttttctgaagataaaataggaaaagtattaatgcttccttcattaggtttttgtaaaaattaatggacatgatatatattgaggatg-agaacaatAACGTAGGCATTGTATCATATTTGAAGCATATAATATAACA----GAATTATTAATGTAATGACTATATAATTAATTCCCCTACAAAGCAACGACAATGTAAACTCAGAAAAAGAAATAGACAAA---GACATGGCATTTTAACTGTTATTAGAAAACTTAACTAGATATAAATATCATACAGACATATTCCTTG---CCTAAAGTAAGAGGCAGACTACACCCTGTAG------ATAACAGCATTATTAC-CCCTAATAGAGACATGTGAGCTTTTAGACCCCA----AAATTAAA-GGAGAATATTTAGTGTT---ATTACCAAAAGCAGATTTAGAGGGGGAAAAATATGATGTTTTT
i dasNov3.JH569098         I 112 I 107
e proCoq1.NW_012152574v1     401917 9408 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2068736 13105 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=103163.000000
s hg38.chr6_GL000254v2_alt   658696 31 +   4827813 GTGATAAATATATATAATAAACTTTTGCCAA
s panTro5.chr6             29632119 31 + 175400573 GTGATAAATATGTATAATAAACTTTTGCCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29870323 31 + 173848474 GTGATAAATATATATAATAAACTTTTGCCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5673251 31 +   6154872 GTGATAAATATATATAATAAACTTTTGCCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29891219 31 + 172585720 GTGATCAATATATGTAATACATTTTTGCCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29554876 31 - 170955103 GTGATCAATATATGTAATACATTTTTGCCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2540673 31 -   2996164 GTGATCAATATATGTAATACATTTTTGCCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     306267 26 +    766320 GTGATAAATATATGTAATATATTTTT-----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28794698 31 -  71996105 GTGATAAATATATGTAATACATTTTTGCCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     276738 31 -    352859 GTGATAAATATATGTAATACATTTTTGCCAA
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH569098           140077 107 -    254539 I
e proCoq1.NW_012152574v1     401917 9408 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2068736 13105 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=134553.000000
s hg38.chr6_GL000254v2_alt   658727 33 +   4827813 GCAACA-AAAATGGAAACTCAATAGAAAGATGGA
s panTro5.chr6             29632150 33 + 175400573 GCAACA-AAAATGGAAACTCAATAGAAAGATGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29870354 33 + 173848474 GCAACA-AAAATGGAAACTCAATAGAAAGATGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5673282 32 +   6154872 GCAACA-AAAATGGAAACTCAATAGAAAGATGG-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29891250 34 + 172585720 GCAACAAAAAAGGGAAACTCAATAGAAAGCTGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29554907 34 - 170955103 GCAACAAAAAAGGGAAACTCAATAGAAAGCTGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2540704 34 -   2996164 GCAACAAAAAAGGGAAACTCAATAGAAAGCTGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     306293 27 +    766320 -------AAAAGGGAAACTCAATAGAAAGCTGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28794729 33 -  71996105 GCAACA-AAAAGGGAAACTCAATAGAAAGCTGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     276769 33 -    352859 GCAACA-AAAAGGGAAACTCAATAGAAAGCTGGA
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     411325 33 +    730504 GCAACA-AGAATGGAAACTCAATGGAAAGATGGA
i proCoq1.NW_012152574v1   I 9408 I 150
e dasNov3.JH569098           140077 107 -    254539 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2068736 13105 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=78750.000000
s hg38.chr6_GL000254v2_alt   658760 21 +   4827813 AAAAATACATCATAGTTacaa
s panTro5.chr6             29632183 21 + 175400573 AAAAATACATCATAGTTacaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29870387 21 + 173848474 AAAAATACATCATAGTTacaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5673314 21 +   6154872 AAAAATACATCATAGTTacaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29891284 21 + 172585720 AAAGATACATCACAGTTataa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29554941 21 - 170955103 AAAGATACATCACAGTTataa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2540738 21 -   2996164 AAAGATACATCACAGTTATAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     306320 21 +    766320 AAAGATACATCACAGTTATAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28794762 21 -  71996105 AAAGATACATCACAGTTATAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     276802 21 -    352859 AAAGATACATCACAGTTATAA
i manLeu1.NW_012099655v1   C 0 C 0
e dasNov3.JH569098           140077 107 -    254539 I
e proCoq1.NW_012152574v1     411358 150 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2068736 13105 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=478417.000000
s hg38.chr6_GL000254v2_alt   658781 126 +   4827813 ctgttagtagaatccttggattgatg------------------gaaggtcacgcatagat--------------------accctggt-------gtaattcagacagaatttt-------------------------------cttacctaaaaaatagcaaaaagtaatgctacacattggtaagaccaaaatcctta
s panTro5.chr6             29632204 126 + 175400573 ctgttagtagaatccttggattgatg------------------gaaggtcacgcatagat--------------------accctggt-------gtaattcagacagaatttt-------------------------------cttacctaaaaaatagcaaaaagtaatgctacacattggtaagaccaaaatcctta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29870408 126 + 173848474 ctgttagtagaatccttggattgatg------------------gaaggtcacgcatagat--------------------accctggt-------gtaattcagacagaatttt-------------------------------cttacctaaaaaatagcaaaaagtaatgctacacattggtaagaccaaaatcctta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5673335 126 +   6154872 ctgttagtagaatccttggattgatg------------------gaaggtcacgcatagat--------------------accctggt-------gtaattcagacagaatttt-------------------------------cttacctaaaaaatagcaaaaagtaatgctacacattggtaagaccaaaatcctta
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29891305 126 + 172585720 ttgttagtagaatccttggattgatg------------------gaaagtcacacacagat--------------------accctggt-------gtaaatcagacagaatttt-------------------------------cttacctaaaagatagcaaaaagtaaggctatacattggtaagaccaaaatcccta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29554962 126 - 170955103 ttgttagtagaatccttggattgatg------------------gaaagtcacacacagat--------------------accctggt-------gtaaatcagacagaatttt-------------------------------cttacctaaaagatagcaaaaagtaaggctatacattggtaagaccaaaatcccta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2540759 126 -   2996164 TTATtagtagaatccttggattgatg------------------gaaagtcacacacagat--------------------accctggt-------gtaaatcagacagaatttt-------------------------------cttacctaaaagatagcaaaaagtaaggctatacattggtaagaccaaaatcccta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     306341 126 +    766320 TTATtagtagaatccttggattgatg------------------gaaagtcacacacagat--------------------accctggt-------gtaaatcagacaaaatttt-------------------------------cttacctaaaagatagcaaaaagtaaggctatacattggtaagaccaaaatcctta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28794783 126 -  71996105 TTATTAGTAGAACCCTTGgattgatg------------------gaaagtcacacacagat--------------------accctggt-------gtaaatcagatagaatttt-------------------------------cttacctaaaagatagcaagaagtaaggctatacattggtaagaccaaaatcctta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     276823 126 -    352859 TTATtagtagaatccttggattgatg------------------gaaagtcacacgcagat--------------------gccctggt-------gtaaatcagacaaaatttt-------------------------------cttacctaaaagatagcaaaaagtaaggctatacattggtaagaccaaaatcctta
i manLeu1.NW_012099655v1   C 0 C 0
s dasNov3.JH569098           140184 188 -    254539 CTGTtgtcagagtctt--gttcggtgacccgaggtatcgggaatgaaagacaaagaaagattgggttcaggggatctgagagcattgatttctcaagctcatcagacaagtttattgagttggggggctagtatatatacccctaacctacgtgacattcagcacaaaatcaagttacctatt------------accctta
i dasNov3.JH569098         I 107 C 0
e proCoq1.NW_012152574v1     411358 150 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2068736 13105 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=357085.000000
s hg38.chr6_GL000254v2_alt   658907 79 +   4827813 tcccaaac-agagaaaaatgtgagcttttggaccccaaaatTAATTATTTAAAATAATTTAGTATTATTAGCAACAGTGA
s panTro5.chr6             29632330 79 + 175400573 tcccaaac-agagaaaaatgtgagcttttggaccccaaaatTAATTATTTAAAATAATTTAGTATTATTAGCAACAGTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29870534 79 + 173848474 tcccaaac-agagaaaaatgtgagcttttggaccccaaaatTAATTGTTTAAAATAATTTAGTATTATTAGCAACAGTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5673461 79 +   6154872 tcccaaac-agagaaaaatgtgagcttttggaccccaaaaCTAATTATTTAAAATAATTTAGTATTATTAGCAACAGTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29891431 79 + 172585720 tcccaaac-agataaaaatgtgagcttttggaccccaaaatTAATTATTTAAAATAATTTAGTGGTACTAGCAACAGTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29555088 79 - 170955103 tcccaaac-agataaaaatgtgagcttttggaccccaaaatTAATTATTTAAAATAATTTAGTGGTACTAGCAACAGTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2540885 79 -   2996164 tcccaaac-agataaaaatgtgagcttttggaccccaaaatTAATTATTTAAAATAATTTAGTGGTATTAGCAACAGTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     306467 79 +    766320 tcccaagc-agataaaaatgtgagcttttggaccccaaaatTAATTATTTAAAATAATTTAGTGGTATTAGCAACAGTGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28794909 79 -  71996105 tcccagac-agataaaaatgtgagcttttggactccaaaatTAATTATTTAAAATAATTTAGTGGTATTAGCAACAGTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     276949 79 -    352859 tcccagac-agataaaaatgtgagcttttggaccccaaaatTAATTATTTAAAATAATTTAGTGGTATTAGCAACAGTGA
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     411508 75 +    730504 tcccaaac-agagagaaatgtgagcttttggacaccaaaatTAG----AGAAAATAATTTAGTGTTATTACCAAGAGTGA
i proCoq1.NW_012152574v1   I 150 C 0
s dasNov3.JH569098           140372 75 -    254539 gctcatactatattaactagtgattgatgaaaacccaacaaactttactggaa-----ctattattataagaatcagtaa
i dasNov3.JH569098         C 0 I 91
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2068736 13105 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=361315.000000
s hg38.chr6_GL000254v2_alt   658986 84 +   4827813 AGAGTAAGATGTAGAAGGTACAAAAGTAATACTATTTCTCTTTATGTCTCTTTCTTTGGTTTTCATAGAACCAC-----------AGTAGAATAT
s panTro5.chr6             29632409 84 + 175400573 AGAGTAAGATGTAGAAGGTACAAAAGCAATACTATTTCTCTTTATGTCTCTTCCTTTGGTTTTCATAGAACCAC-----------AGTAGAATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29870613 84 + 173848474 AGAGTAAGATGTAGAAGGTACAAAAGCAATACTATTTCTCTTTATGTCTCTTTCTTTGGTTTTCATAGAACCAC-----------AGTAGAATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5673540 84 +   6154872 AGAGTAAGATGTAGAAGGTACAAAAGCAATACTATTTCTCTTTATGTCTCTTTCTTTGGTTTTCATAGAACCAC-----------AGTAGAATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29891510 84 + 172585720 AGAGTCAGACGTAGAAGGTACAAAGGCAATACTATTTCTCTTTATTTCTCTTTCTTTGGTTTTCATAGAATCAT-----------AGTAGAATAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29555167 84 - 170955103 AGAGTCAGACGTAGAAGGTACAAAGGCAATACTATTTCTCTTTATTTCTCTTTCTTTGGTTTTCATAGAATCAT-----------AGTAGAATAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2540964 84 -   2996164 AGAGTCAGACTTAGAAGGTACAAAGGCAATACTATTTCTCTTTATTTCTCTTTCTTTGGTTTTCATAGAATCAT-----------AGTAGAATAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     306546 84 +    766320 AGAGTCAGACGTAGAAGGTACAAAGGCAATACTATTTCTCTTTATTTCTCTTTCCTTGGTTTTCATAGAATCAT-----------AGTAGAATAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28794988 84 -  71996105 AGAGTCAGACATAGAAGGCACAAAGGCAATACTATTTCTCTTTATTTCTCTTTCTTTGGTTTTCATAGAATCAT-----------AGTAGAATAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     277028 84 -    352859 AGAGTCAGACGTAGAAGGTACAAAGGCAATACTATTTCTCTTTATTTCTCTTTCCTTGGGTTTCATAGAATCAT-----------AGTAGAATAC
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     411583 92 +    730504 AGAGCCAGATTTAGAAAGAACAAAGGCAATAC---TTCTATTTATTTCCCTTTCTTTGAGATCCATAGAATCACAGCAATAAATAAGTAGAATAT
i proCoq1.NW_012152574v1   C 0 C 0
e dasNov3.JH569098           140447 91 -    254539 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2068736 13105 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=182105.000000
s hg38.chr6_GL000254v2_alt   659070 39 +   4827813 TAAAGATAATCAT---------CTTTCTGTACTGATCAATGG----------------------AATGTG-----
s panTro5.chr6             29632493 39 + 175400573 TAAAGATAATCAT---------CTTTCTGTACTGATCAATGG----------------------AATGTG-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29870697 39 + 173848474 TAAAGATAATCAT---------CTTTCTGTACTGATCAATGG----------------------AATGTG-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5673624 39 +   6154872 TAAAGATAATCAT---------CTTTCTGTACTGATCAATGG----------------------AATGTG-----
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29891594 39 + 172585720 TAAAGATAATCAT---------CTTTCTGTACTGATCAATGG----------------------AATGTG-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29555251 39 - 170955103 TAAAGATAATCAT---------CTTTCTGTACTGATCAATGG----------------------AATGTG-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2541048 39 -   2996164 TAAAGATAATCAT---------CTTTCTGTACTGATCAATGG----------------------AATGTG-----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     306630 39 +    766320 TAAAGATAATCAT---------CTTTCTGTACTGATCAATGG----------------------AATGTG-----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28795072 39 -  71996105 TAAAGATAATCAT---------CTTTCTGTACTGATCAATGG----------------------AATGTG-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     277112 39 -    352859 TAAAGATAATCAT---------CTTTCTGTACTGATCAGTGG----------------------AATGTG-----
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     411675 39 +    730504 TAAATACAATCCT---------CTTTCTGTACTGATCAATGG----------------------AACGTG-----
i proCoq1.NW_012152574v1   C 0 I 732
s dasNov3.JH569098           140538 75 -    254539 caccgataatcataagggacagcttgactcagtggtcaaggaagtaacttgcttccatggaaacaacatgccttt
i dasNov3.JH569098         I 91 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2068736 13105 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=70543.000000
s hg38.chr6_GL000254v2_alt   659109 17 +   4827813 GGTGACCATATTTATTA
s panTro5.chr6             29632532 17 + 175400573 GGTGACCATATTTATTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29870736 17 + 173848474 GGTGACCATATTTATTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5673663 17 +   6154872 GGTGACCATATTTATTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29891633 17 + 172585720 GGTGACCACATTTATTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29555290 17 - 170955103 GGTGACCACATTTATTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2541087 17 -   2996164 GGTGACCACATTTATTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     306669 17 +    766320 GGTGACCACATTTATTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28795111 17 -  71996105 GGTGACCACATTTATTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     277151 17 -    352859 GGTGACCACATTTATTA
i manLeu1.NW_012099655v1   C 0 C 0
s dasNov3.JH569098           140613 17 -    254539 gtttcccacaGTCTGTA
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     411714 732 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2068736 13105 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=918384.000000
s hg38.chr6_GL000254v2_alt   659126 239 +   4827813 ATTTTTATTGCCAATTTTCTTT-CACTTTATATACCAAAATA-TTTTCCAAGGGAGCCCTCAAGAAGAGAAAGTGAATCTGAACCTCTACCATAGGAAATGAAAGGAAATTTGACTAGGAAAAAGTATTTTAAATAAACAAATAAATATT------TTAAA-----------AAACAGTATTGTGAAAGGTCAAATAAAATATTGGGTTACTATTTTAAAGAAAAAA-TCCAGCAAATATATTAAGCTATTGAAAACTG
s panTro5.chr6             29632549 240 + 175400573 ATTTTTATTGCCAATTTTCTTT-CACTTTATATACCAAAATA-TTTTCCAAGGGAGCCCTCAAGAAGAGAAAGTGAATCTGAACCTCTACCATAGGAAATGAAAGGAACTTTGACTAGGAAAAAGTATTTTAAATAAGCAAATAAATATT------TTAAA-----------AAACAGTATTGTGAAAGGTCAAATAAAATATTGGGTTACTATTTTAAAGAAAAAAATCCAGCAAATATATTAAGCTATTGAAAACTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29870753 239 + 173848474 ATTTTTATTGCCAATTTTCTTT-CACTTTATATACCAAAATA-TTTTCCAAGGGAGCCCTCAAGAAGAGAAAGTGAATCTGAACCTCTACCATAGGAAATGAAAGGAAATTTGACTAGCAAAAAGTATTTTAAATAAACAAATAAATATT------TTAAA-----------AAACAGTATTGTGAAAGGTCAAATAAAATATTGGGTTACTATTTTAAAGAAAAAA-TCCAGCAAATATATTAAGCTATTGAAAACTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5673680 239 +   6154872 ATTTTTATTGCCAATTTTCTTT-CATTTTATATACCAAAATA-TTTTCCAAGGGAGCCCTCAAGAAGAGAAAGTGACTCTGAACCTCTACCATAGGAAATGAAAGGAAATTTGACTAGGAAAAAGTATTTTAAATAAACAAATAAATATT------TTAAA-----------AAACAGTATTGTGAAAGGTCAAATAAAATATTGGGTTACTATTTTAAAGAAAAAA-TCCAGCAAATATATTAAGCTATTGAAAACTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29891650 256 + 172585720 ATTTTTGTTGCCAATTTTCTTT-CATTTTATATACCAAAATA-TCTTCCAAGGGAGCCCTCAAGAAGAGAAAGTGAATCTGAACCTCTACCTTAGGAAATGAAAGGAAATTTGACTAGGAAAaaatattttaaataaacaaataaatatttaaatattaaatattTTTTTTAAAACAGTATTATGGAAAGTCAAATAAAATATTGGGTTGCTGTTTTAAAGAAAAAA-TCCAGCAAATATATTAAGCTATTGAAAACTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29555307 256 - 170955103 ATTTTTGTTGCCAATTTTCTTT-CATTTTATATACCAAAATA-TCTTCCAAGGGAGCCCTCAAGAAGAGAAAGTGAATCTGAACCTCTACCTTAGGAAATGAAAGGAAATTTGACTAGGAAAaaatattttaaataaacaaataaatatttaaatattaaataTTTTTTTAAAAACAGTATTATGGAAGGTCAAATAAAATATTGGGTTGCTGTTTTAAAGAAAAAA-TCCAGCAAATATATTAAGCTATTGAAAACTG
i macFas5.chr4             C 0 I 27833
s macNem1.NW_012011356v1    2541104 256 -   2996164 ATTTTTGTTGCCAATTTTCTTT-AATTTTATATACCAAAATG-TCTTCCAAGGGAGCCCTCAAGAAGAGAAAGTGAATCTGAACCTCTACCTTAGGAAATGAAAGGAAATTTGACTAGGAAAaaatattttaaataaacaaataaatatttaaatattaaataTTTTTTTAAAAACAGTATTATGGAAGGTCAAATAAAATATTGGGTTGCTGTTTTAAAGAAAAAA-TCCAGCAAATATATTAAGCTATTGAAAACTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     306686 242 +    766320 ATTTTTGTTGCCAATTTTCTTT-CATTTTATATACCAAAATA-TCTTCCAAGGGAGCCCTCAAGAAGAGAAAGTGAATCTGAACCTCTACCTTAGGAAATGAAAGGAAATTTGACTAGGAAAAAATATTTTAAATAAACAAATAAATGTTT-----TTAAA---------AAAAACAGTATTGTGGAAGGTCAAATAAAATATTGGGTTGCTATTTTAAAGAAAAAA-TCCAGCAAATATATTAAGCTATTGAAAACTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28795128 241 -  71996105 ATTTTTGTTGCCAATTTTCTTT-CATTTTATATACCAAAATA-TCTTCCAAGGGAGCCCTCAAGAAGAGAAAGTGAATCTGAACCTCTGCCTTAGGAAATGAAAGGAAATTTGACTAGGAAAAAATATTTTAAATAAACAAATAAATA-TT-----TTAAA---------AAAAACAGTATTGTGGAAGGTCAAATAAAATATTGGGTTGCTATTTTAAAGAAAAAA-TCCAGCAAATATATTAAGCTATTGAAAACTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     277168 242 -    352859 ATTTTTGTTGCCAATTTTCTTT-CATTTTATATACCAAAATA-TCTTCCAAGGGAGCCCTCAAGAAGAGAAAGTGAATCTGAACCTCTACCTTAGGAAATGAAAGGAAATTTGACTAGGAAAAAATATTTTAAATAAACAAATACATATTT-----TTAAA---------AAAAACAGTATTGTGGAAGGTCAAATAAAATATTGGGTTGCTACTTTAAAGAAAAAA-TCCAGCAAATATATTAAGCTATTGAAAACTG
i manLeu1.NW_012099655v1   C 0 C 0
s mm10.chr17               57647236 143 -  94987271 ATTTTCACCTCCAACTATC----CACTTTAAATTTCAGGGTATTTTTTCCAGGGAGTCCTCAGGAACAGATAGTGAAGTTTCACTTCTATCTGAAGAAATTAAGGGAAGTTTTGCTA---------------------------------------ATAAA-----------AAAC----------------------------------------------------T----------TATCAGGCCATGGAGACTTG
i mm10.chr17               N 0 C 0
s dasNov3.JH569098           140630 126 -    254539 ACTCTTGTGGCCAAATTTCTTTCCACTTTATACA--AGAGTA-TTTTGGAAGGGAGTCTCCAATACGAGCAAGTCAACTGACATCTCTTTCCTAGGATTTCAAAGTAAATTCG--------------------------CAATTGACACTT-----GTGG---------------------------------------------------------------------------------------------------
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     411714 732 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2068736 13105 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=102028.000000
s hg38.chr6_GL000254v2_alt   659365 36 +   4827813 TCTTGTCCATGGTTATGAAACCAAGGAACAAACATA
s panTro5.chr6             29632789 36 + 175400573 TCTTGTCCATGGTTATGAAACCAAGGAATAAACATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29870992 36 + 173848474 TCTTGTCCATGGTTATGAAACCAAGGAACAAACATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5673919 36 +   6154872 TCTTGTCCATGGTTATGAAACCAAGGAACAAACATA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29583396 36 - 170955103 TGTTGGCCATAGTTCTAAAACTaaggaacaaacata
i macFas5.chr4             I 27833 C 0
s cerAty1.NW_012002711v1     306928 36 +    766320 TCTTGTCCATGGTTATGAAACCAAGGAACAAACATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28795369 36 -  71996105 TCTTGTCCATGGTTATGAAACCAAGGAATAAACATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     277410 36 -    352859 TCTTGTCCATGGTGATGAAACCAAGGAACAAACGTA
i manLeu1.NW_012099655v1   C 0 C 0
s mm10.chr17               57647379 35 -  94987271 GATTGTCCTTTGTTTT-CTATTAAGGATTAATCATA
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           140756 36 -    254539 TTTTGTCCATGGTGCTGAAACCAGGGAAAACTCAAG
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     411714 732 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2068736 13105 -   2232465 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e macNem1.NW_012011356v1    2541360  0 -   2996164 C
e rheMac8.chr4             29891906  0 + 172585720 C

a score=90142.000000
s hg38.chr6_GL000254v2_alt   659401 43 +   4827813 TTAAGAAAAAAAG-------ATAAGAAGAACGACAACAACAGAAAAGTGG
s panTro5.chr6             29632825 43 + 175400573 TTAAGAAAAAAAG-------ATAAGAAGAACGACAACAACAGAAAAGTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29871028 43 + 173848474 TTAAGAAAAAAAG-------ATAAGAAGAACGACAACAACAGAAAAGTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5673955 43 +   6154872 TTAAGAAAAAAAG-------ATAAGAAGAACGACAACAACAGAAAAATGG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29583432 47 - 170955103 gtaaggaaaaaaaaagaaataaaacaagaatt---taaaaaaaaaaaaGG
i macFas5.chr4             C 0 T 27916
s cerAty1.NW_012002711v1     306964 40 +    766320 TTAAGAAAAAAAG-------ATAAGAAGAACG---ACAACAGAAAAATGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28795405 40 -  71996105 TTACGAAAAAAAG-------ATAAGAAGAACG---ACAACAGAAAAATGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     277446 40 -    352859 TTAAGAAAAAAAG-------ATAAGAAGAACG---ACAACAGAAAAATGG
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2081841 32 -   2232465 TTAAGAAAAAAGA-------AAAA-----------GCAATGAAAAACTGC
i otoGar3.GL873742         I 13105 C 0
s mm10.chr17               57647414 32 -  94987271 --------ATTAT-------ACAATAGGAAGC---ACAACAGAAAAGTGG
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           140792 36 -    254539 GGAATGGAAGAAA-------ATAGGAAGAATG-------TGGAAAAGAAG
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     411714 732 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I
e macNem1.NW_012011356v1    2541360  0 -   2996164 C
e rheMac8.chr4             29891906  0 + 172585720 C

a score=548987.000000
s hg38.chr6_GL000254v2_alt   659444 113 +   4827813 AATTCTACAGAGAAATTCCATATGGCTATCCCCTTATGCTGCAGGTGCAGAGAGACCTCCTGTTTATTCTCACGACAATCCTTCTCAGCACCCAGGGGACAGTTTCTCTCAGG
s panTro5.chr6             29632868 113 + 175400573 AATTCTACAGAGAAATTCCATATGGCTATCCCCTTATGCTGCAGGTGCAGAGAGACCTCCTGTTTATTCTCACGACAATCCTTCTCAGCACCCAGGGGACAGTTTCTCTCAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29871071 113 + 173848474 AATTCTACAGAGAAATTCCATATGGCTATCCCCTTATGCTGCAGGTGCAGAGAGACCTCCTGTTTATTCTCACGACAATCCTTCTCAGCACCCAGGGGACAGTTTCTCTCAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5673998 113 +   6154872 AATTCTACAGAGAAATTCCATATGGCTATCCCCTTATGCTGCAGGTGCAGAGAGACCTCCTGTTTATTCTCACGACAATCCTTCTCAGCACCCAGGGGACAGTTTCTCTCAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29891906 113 + 172585720 AATTACACAGAGAAATTCCATATGGCGATCCCCTCATGCTGCAGGTGCAGAGAGTCCTCCTGTTTATTCTCACAACAATCCTTCTCAGCACCCAGGAGACAGTTTCTCTCAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29555563 113 - 170955103 AATTACACAGAGAAATTCCATATGGCGATCCCCTCATGCTGCAGGTGCAGAGAGTCCTCCTGTTTATTCTCACAACAATCCTTCTCAGCACCCAGGGGACAGTTTCTCTCAGG
i macFas5.chr4             T 27916 C 0
s macNem1.NW_012011356v1    2541360 113 -   2996164 AATTACACAGAGAAATTCCATATGGTGATCCCCTCATGCTGCAGGTGCAGAGAGTCCTCCTGTTTATTCTCACAACAATCCTTCTCAGCACCCAGGGGACAGTTTCTCTAAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     307004 113 +    766320 AATTCCACAGAGAAATTCCATATGGCGATCCCCTTATGCTGCAGGTGCAGAGAGTCCTCCTGTTTATTCTCACGACAATCCTTCTCAGCACCCAGGGGACAGTTTCTCTCAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28795445 113 -  71996105 AATTCCACAGAGAAATTCCATATGGCCATCCCCTCATGCTGCAGGTGCAGACAGATCTCCTGTTTATTCTCACGACAATCCTTCTCAGCACCCAGGGGACAGTTTCTCTCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     277486 113 -    352859 AATTCCACAGAGAAATTCCATATGGCGATCCCCTCATGCTGCAGGTGCAGAGAGACCTCCTGTTTATTCTCACAACAATCCTTCTCAGCACCCAGGGGACAGTTTCTCTCAGG
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2081873 111 -   2232465 AACTCCACATGGAAATTCCCTGAAGCTACTCCCTTATATGGCAGATGTAGAACGGTAG-CTGTTTATTTTTACAGTTATCTTTCTCAGCA-CCAAGGGACATTCTCTCTTTGG
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57647446  70 -  94987271 ------------TGATTTCATAAGACGGCTCC---------------------------TTACTTACTCTTAGAATAA---TTCTCAGCA-CCAGGGGACAAGCTCTCTCAGG
i mm10.chr17               C 0 I 1
s dasNov3.JH569098           140828 105 -    254539 -----GAGAAAGAAATTCCCCAACGAGGCCGCCTCATCTTCTAGGTGTAGAGA-ATATCCTGTTTATTCTT--GAACATTCTTCCCAGAACCCAGGGGACACAGTCTCTCAAG
i dasNov3.JH569098         C 0 I 1
e proCoq1.NW_012152574v1     411714 732 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2402092 5922 -   3067355 I

a score=302657.000000
s hg38.chr6_GL000254v2_alt   659557 51 +   4827813 TTTTTATGTCTAGAGATCTGCAGCTCATTGGAAGGCAGGCAGA--TTTTC----AGA
s panTro5.chr6             29632981 51 + 175400573 TTTTTATGTCTAGAGATCTGCAGCTCATTGGAAGGCAGGCAGA--TTTTC----AGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29871184 51 + 173848474 TTTTTATGTCTAGAGATCTGCAGCTCATTGGAAGGCAGGCAGA--TTTTC----AGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5674111 51 +   6154872 TTTTTATGTCTAGAGATCTGCAGCTCATTGGAAGGCAGGCAGA--TTTTC----AGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29892019 51 + 172585720 ATTTTATGTCTAGAGAGCTGCAGCTCATTGGAAGGCAGGCAGA--TTTTC----AGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29555676 51 - 170955103 ATTTTATGTCTAGAGAGCTGCAGCTCATTGGAAGGCAGGCAGA--TTTTC----AGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2541473 51 -   2996164 TTTTTATGTCTAGAGATCTGCAGCTCATTGGAAGGCAGGCAGA--TTTTC----AGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     307117 51 +    766320 TTTTTATGTCTAGAGAGCTGCAGCTCATTGGAAGGCAGGCAGA--TTTTC----AGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28795558 51 -  71996105 TTTTTATGTCTAGAGATCTGCAGCTCATTGGAAGGCAGGCAGA--TTTTC----AGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     277599 51 -    352859 TTTTTATGTCTAGAGATCTGCAGCTCATTGGAAGGCAGGCAGA--TTTTC----AGA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2408014 55 -   3067355 TTTCTATGTCTAGAGACCTGTGGCTCATTAAAAGGCAGGTTGA--TTTTCAGAAAGA
i colAng1.NW_012115566v1   I 5922 C 0
s otoGar3.GL873742          2081984 50 -   2232465 AATTTGTGTCCAG-GATCTGTGGATCATTAAAAGCTCAGCAGA--ATTTC----AAA
i otoGar3.GL873742         C 0 I 4
s mm10.chr17               57647517 50 -  94987271 CTTTTATTTTTAGAG-TCTCATGATTTTTAGA--GCCAGCAGATTTTTTC----AGA
i mm10.chr17               I 1 I 4
s dasNov3.JH569098           140934 51 -    254539 TGTTTATATCTAGAGATCTGGGGTTCATAAAAAAGCAGGCAGA--TATCC----AAA
i dasNov3.JH569098         I 1 C 0
e proCoq1.NW_012152574v1     411714 732 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=289463.000000
s hg38.chr6_GL000254v2_alt   659608 44 +   4827813 -GAGGAAAAGATTTTTGAAGAT-AA-----TTTATGCTG-------CAATCCCAACAT
s panTro5.chr6             29633032 44 + 175400573 -GAGGAAAAGATTTTTGAAGAT-AA-----TTTATGCTG-------CAATCCCAACAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29871235 44 + 173848474 -GAGGAAAAGATTTTTGAAGCT-AA-----TTTATGCTG-------CAATCCCAACAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5674162 44 +   6154872 -CAGGAATAGATTTTTGAAGAT-AA-----TTTATGCTG-------CAATCCCAACAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29892070 44 + 172585720 -GAGGAAAGAATTTTTGAAGAT-AA-----TTTATGCTG-------CAATCCCAACAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29555727 44 - 170955103 -GAGGAAAGAATTTTTGAAGAT-AA-----TTTATGCTG-------CAATCCCAACAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2541524 44 -   2996164 -GAGGAAAGAATTTTTGAAGAT-AA-----TTTATGCTA-------CAATCCCAACAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     307168 44 +    766320 -GAGGAAAGAATTTTTGAAGAT-AA-----TTTATGCTG-------CAATCCCAACAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28795609 44 -  71996105 -GAGGAAACAATTTTTGAAGAT-AA-----TTTATGCTG-------CAATCCCAACAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     277650 44 -    352859 -GAGGAAACAATTTTTGAAGAT-AA-----TTTATGCTG-------CAATCCCAACGT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2408069 45 -   3067355 -GAGAAAGAGGTTTTTAAAGATGAG-----TTTATGCTG-------CAATTCCAACAT
i colAng1.NW_012115566v1   C 0 I 553
s proCoq1.NW_012152574v1     412446 49 +    730504 -GAGGAAAAGGTTTTTGAAAAT-AAAGAGATTTATGCTG-------CAATCATAACAT
i proCoq1.NW_012152574v1   I 732 C 0
s otoGar3.GL873742          2082038 48 -   2232465 -GAGGAAGAGATTTGTGAGGAT-AAAGAG-TTTATGCTG-------CAATCTCAACAT
i otoGar3.GL873742         I 4 C 0
s mm10.chr17               57647571 55 -  94987271 -GAGAAAGAAATTTCTGAAGAC-AAAGAA-TTTATGCCGTTGGATTCAGTGCAAATAA
i mm10.chr17               I 4 I 23
s dasNov3.JH569098           140985 48 -    254539 AAGGGAGAGAAGTTTTGAAGAT-GAAGAA-ATTATACTG-------CAATCCAACCT-
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I

a score=1195419.000000
s hg38.chr6_GL000254v2_alt   659652 213 +   4827813 CAACCATCACTTCAAATATTTTTC---TATTTATAATCACTGGGAGTATAAATCTGAAAAGCTCTTTTACCTGTGATTCTGAACTCTCAATCCGGGTGAGAGAATAGAATAGGAGACAGGTTGGGAA-GCTGCTCGTATTTTTTATCTGTTAATGAGTGACCTGACTGCTTGCGAGTATTAAAGTTAGATGCCCAGGATTTAGAGCTGGTTTCCTAT
s panTro5.chr6             29633076 213 + 175400573 CAACCATCACTTCAAATATTTTTC---TATTTATAATCACTGGGAGTGTAAATCTGAAAAGCTCTTTTACCTGTGATTCTGAACTCTCAATCCGGGTGAGAGAATAGAATAGGAGACAGGTTGGGAA-GCTGCTCGTATTTTTTATCTGTTAATGAGTGACCTGACTGCTTGCGAGTATTAAAGTTAGATGCCCAGGATTTAGAGCTGGTTTCCTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29871279 213 + 173848474 CAACCATCACTTCAAATATTTTTC---TATTTATAATCACTGGGAGTGTAAATTTGAAAAGCTCTTTTACCTGTGATTCTGAACTCTCAATCCGGGTGAGAGAATAGAATAGGAGACAGGTTGGGAA-GCTGCTCGTATTTTTTATCTGTTAATGAGTGACCTGACTGCTTGCGAGTATTAAAGTTAGATGCCCAGGATTTAGAGCTGGTTTCCTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5674206 213 +   6154872 CAACCATCACTTCAAATATTTTTC---TATTTATAATCACTGGGAGTGTAAATCTGAAAAGCTCTTTTACCTGTGATTCTGAACTCTCAATCCGGGTGAGAGAATAGAATAGGAGACAGGTTGGGAA-GCTGCTCGTATTTTTTATCTGTTAATGAGTGACCTGACTGCTTGCGAGTATTAAAGTTAGATGCCCAGGATTTAGAGCTGGTTTCCTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29892114 211 + 172585720 CAACCATCACTTCAAATATTTTTC---TATTTATAATTACTGGGAGTGTAAACCTGAAAAGCTCTTTTACCTGTGATTCTGAACACACAAT-CAGGTGAGAGAATAGAATAGGAGACAGGCTGGGAA-GCTGCTCGTA-TTTTTATCTGTTTATGAGTGACCTGACTGCTTGCGAGTATTAAAGTTAGATGCCCAGGGCTTCGAGCTGGTTTCCTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29555771 211 - 170955103 CAACCATCACTTCAAATATTTTTC---TATTTATAATTACTGGGAGTGTAAATCTGAAAAGCTCTTTTACCTGTGATTCTGAACACACAAT-CAGGTGAGAGAATAGAATAGGAGACAGGCTGGGAA-GCTGCTCGTA-TTTTTATCTGTTTATGAGTGACCTGACTGCTTGCGAGTATTAAAGTTAGATGCCCAGGGCTTCGAGCTGGTTTCCTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2541568 212 -   2996164 CAACCATCACTTCAAATATTTTTC---TATTTATAATTACTGGGAGTGTAAATCTGAAAAGCTCTTTTACCTGTGATTCTGAACACACAAT-CAGGTGAGAGAATAGAATAGGATACGGGCTGGGAA-GCTGCTCATATTTTTTATCTGTTCATGAGTGACCTGACTGCTTGCGAGTATTAAAGTTAGATGCCCAGGGCTTCGAGCTGGTTTCCTAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     307212 212 +    766320 CAACCATCACTTCAAATATTTTTC---TATTTATAATTACTGGGAGTGTAAATCTGAAAAGCTCTTTTACCTGTGATTCTGAACACACAAT-CAGGTGAGAGAATAGAATAGGAGACAGGCTGGGAA-GCTGCTCATATTTTTTATCTGTTCATGAGTGACCTGACTGCTTGCGAGTATTAAAGTTAGATGCCCAGGGCTTCCAGCTGGTTTCCTAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28795653 211 -  71996105 CAACCATCACTTCAAATATTTTTC---TATTTATAATTACTGGGAGTGTAAATCTGAAAAGCTCTTTTACCTGTGATTCTGAACACACAAT-CAGGTGAGAGAATAGAATAGGAGACAGGCTGGGAA-GCTGCTCGTA-TTTTTATCTGTTCATGAGTGACCTGACTGCTTGCGAGTATTAAAGTTAGATGCCCAGGGCTTCGAGCTGGTTTCCTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     277694 212 -    352859 CAACCATCACTTCAAATATTTTTC---TATTTATAATTACTGGGAGTGTAAATCTGAAAAGCTCTTTTACCTGTGATTCTGAACACACAAT-CAGGTGAGAGAATAGAATAGGAGACAGGCTGGGAA-GCTGCTCATATTTTTTATCTGTTCATGAGTGACCTGACTGCTTGCGAGTATTAAAGTTAGATGCCCAGGGCTTCGAGCTGGTTTCCTAT
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     412495 210 +    730504 GAGCCATCACTTCATATATTTTTC-AGCTTTTATAGTCACTGGGAATATAAACTTGAAAAGCTTTATTACCTGTGAATCAGAACATTCTAT-CAGGTAAGAGGATGAAATAGGACGCAGGCTGGGAA-GTTGCCCATATTTTCAATGTGTTAATGAGTGATCTTCTTGT----TAATATTAAAGTTAAATGTCCGGAATTTAGAGCTTGTTTCCTAT
i proCoq1.NW_012152574v1   C 0 I 114
s otoGar3.GL873742          2082086 214 -   2232465 GAACCATCACTTCAAGAATTTTTC-AGCTTTTATAATCACTGGAAATGTGAACTTGGAAAGCTTTCTATCCTGTGGATCAGAACACTCAAT-CAGGTAAGAGGATGAAATAGGACACAGGCTGAGTA-GCTGTGCTTGTTTTCAACATGTTAATGCATGATCTATCTATATACCAATATTAAAGTTAAATGCCCCAAATTCAAAGCTTACTTCCTAT
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57647649 184 -  94987271 AAACTATTGCCTCATATATTTTTCTATTATTTATAATCACAAGAAGC----------AGAGACTTTTTACCTGT------------CCAGT-CAGGTAAGAAAATGAAAACACAAGCAGGCTGGAAA-ATTGGTCATACTTTCTG--TGTT-----GTGATCTGCCT-CTTCCTGGCATTAGAACTAG-TGTCTAAGATTTAGAATTACTTTCCCAT
i mm10.chr17               I 23 C 0
s dasNov3.JH569098           141033 211 -    254539 GAATTACCATGCGAAATATTGTTCTCCTATTTATAGTCACTGAGAGTGTAAACCTGAAAACCCTTCCTGCCTGGAATTCAGAATTCTCGAG-TAGGTAAGA--ATGCAGTAGAAAACAGGCTAGGAATGTTCCTTATA--AACTATCTG-TAGTGAGAGAACTATATTTCTGCTAGTACTAAACTTACATGCCCAGGATTTAAAACCAACTTCGTAT
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2408114 553 -   3067355 I

a score=524494.000000
s hg38.chr6_GL000254v2_alt   659865 114 +   4827813 TTTTATGATGG--AGTCTTCATTGTAGTTGTAGATTATGAAAGCATTTTGTTTTCCGCACTTTTATTGCCATATCTCCTTCTCTATTCAAC-ATGCCTGGCTCTCTAGATATTCGCT--
s panTro5.chr6             29633289 114 + 175400573 TTTTATGATGG--AGTCTTCATTGTAGTTGTAGATTATGAAAGCATTTTGTTTTCTGCACTTTTATTGCCATATCTCCTTCTCTATTCAAC-ATGCCTGGCTCTCTAGATATTCGCT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29871492 114 + 173848474 TTTTATGATGG--AGTCTTCATTGTAGTTGTAGATTATGAAAGCATTTTGTTTTCCGCACTTTTATTGCCATATCTCCTTCTCTATTCAAC-ATGCCTGGCTCTCTAGATATTTGCT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5674419 114 +   6154872 TTTTATGATGG--AGTCTTCATTGTAGTTGTAGATTATGAAAGCATTTTGTTTTCCGCACTTTTATTGCCATATCTCCTTCTCTATTCAAC-ATGCCTGGTTCTCTAGATATTTGCT--
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29892325 114 + 172585720 TTTTATGATGG--AGTCTTCATTGCGGTTGTAGATTATGAAAGCATTTTGTTTTCCGCACTTGTATTGCCATGTCTCCTTCTCCATTCAAC-GTGCCTGGTTCTCTACATACTCGCT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29555982 114 - 170955103 TTTTATGATGG--AGTCTTCATTGTGGTTGTAGATTATGAAAGCATTTTGTTTTCCGCACTTGTATTGCCATGTCTCCTTCTCCATTCAAC-GTGCCTGGTTCTCTACATACTCGCT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2541780 114 -   2996164 TTTTATGATGG--AGTCTTCATTATGGTTGTAGATTATGAAAGCATTTTGTTTTCCGCACTTGTGTTGCCATGTCTCCTTCTGCATTCAAC-ATGCCTGGTTCTCTACATATTCGCT--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     307424 114 +    766320 TTTTATGATGG--AGTCTTCATTGTGGTTGTAGATTATGAAAGCATTTTGTTTTCCGCACTTGTATTGCCATGTCTCCTTCTCCGTTCAAC-GTGCCTGGTTCTCTACATATTCGCT--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28795864 114 -  71996105 TTTTATGATGG--AGTCTTCATTGTGGTTGTAGATTATGAAAGCATTTTGTTTTCCGCACTTGTATTGCCATGTCTCCTTCTCCATTCAAC-GTGCCTGGTTCTCTACATATTCGCT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     277906 114 -    352859 TTTTATGATGG--AGTCTTCATTGTGGTTGTAGATTATGAAAGCATTTTGTTTTCCGCACTTGTATTGCCATGTCTCCTTCTCCATTCAAC-GTGCCTGGTTCTCTACATATTCGCT--
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2082300 114 -   2232465 -CTCATGATGG--TCTGCTCATTGTGTTTATGGAATTTGAAGCCGCTTTACCTGTTATATTTTTATTCTCATATCTTATTGTCAATTAGACAATATCTTAGTGTCAATTTTGACACT--
i otoGar3.GL873742         C 0 I 4
s mm10.chr17               57647833 111 -  94987271 -TTTATAATGGGCAAACTCCCT----ATTACAGGTCATAAAAACAAGTTCTTTCTCACATTTTTACCACTATGCCTTATTCTCAATTCAAT-ATTCCTGGGTCTTTAGTTATTATCC--
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           141244 110 -    254539 -ATTAGAGTGG--ACTGCTCTTTGAGGTTGTAGTTCATGGAGACACCTTACATCTCAAATATTTTTTA-AATGTCTCATTCTCAAT--AAT-ATGCCTGGTTCTCAGGACAT--GCTAC
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     412705 114 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2408114 553 -   3067355 I

a score=248251.000000
s hg38.chr6_GL000254v2_alt   659979 41 +   4827813 AAAGCAAATCTGAAATCCCTAAATATTGAAATTGCAGTGAA
s panTro5.chr6             29633403 41 + 175400573 AAAGCAAATCTGAAATCCCTAAATATTGAAATTGCAGTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29871606 41 + 173848474 AAAGCAAATCTGAAATCCCTAAATATTGAAATTGCAGTGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5674533 41 +   6154872 AAAGCAAATCTGACATCCCTAAATATTGAAATTGCAGTGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29892439 41 + 172585720 AAAGCAAATCTGAAATCCCTAAATATTGAAATTGCAGTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29556096 41 - 170955103 AAAGCAAATCTGAAATCCCTAAATATTGAAATTGCAGTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2541894 41 -   2996164 AAAGCAAATCTGAAATGCCTAAATATTGAAATTGCAGTGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     307538 41 +    766320 AAAGCAAATCTGAAATGCCTAAATATTGAAATTGCAGTAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28795978 41 -  71996105 AAAGCAAATCTGAAATGCCTAAATATTGAAATTGCAGGGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     278020 41 -    352859 AAAGCAAATCTGAAATGCCTAAATATTGAAATTGCAGTAAA
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     412819 41 +    730504 AAAGCAAATCTGTAATCTCTAAGTATTGGAATTGCAGTGAA
i proCoq1.NW_012152574v1   I 114 I 75
s otoGar3.GL873742          2082418 41 -   2232465 AAAACACATCTGTAATCTCTAAATATTGAAATTGCAGTGAA
i otoGar3.GL873742         I 4 C 0
s mm10.chr17               57647944 41 -  94987271 AAAGCAAATCTGCAATCTCTAAATATTGAAACAATAGTGAA
i mm10.chr17               C 0 I 5
s dasNov3.JH569098           141354 10 -    254539 AAAGCAAGTT-------------------------------
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2408114 553 -   3067355 I

a score=402194.000000
s hg38.chr6_GL000254v2_alt   660020 106 +   4827813 AGAAATATTTTCGTACAGAGAAGTTGGCTAAACAACA--TTCTTTAAACGTTAGGAAAATGttg-----ttttattatttattattttttaaa--------ttttcttttt-ACCAAATAGA
s panTro5.chr6             29633444 106 + 175400573 AGAAATATTTTCATACAGAGAAGTTGGCTAAACAACA--TTCTTTAAACGTTAGGAAAATGttg-----ttttattatttattattttttaaa--------ttttcttttt-ACCAAATAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29871647 106 + 173848474 AGAAATATTTTCATACAGAGAAGTTGGCTAAACAACA--TTCTTTAAACGTTAGGAAAATGttg-----ttttattatttattattttttaaa--------ttttcttttt-ACCAAATAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5674574 106 +   6154872 AGAAATATTTTCATACAGAGAAGTTGGCTAAACAACA--TTCTTTAAACGTTAGGAAAATGttg-----ttttattatttattattttttaaa--------ttttcttttt-ACCAAATAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29892480 106 + 172585720 AGAAATATTTTCATACAGAGAAGTTGGCTAAACAACA--TTCTTTAAATGTAAGGAAAatgttg-----tttaattatttattatttttttaa--------ttttcttttT-ACCAAATAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29556137 106 - 170955103 AGAAATATTTTCATACAGAGAAGTTGGCTAAACAACA--TTCTTTAAATGTAAGGAAAATGTTG-----TTTAATTATTTATTATTTTTTAAA--------TTTTCTTCTT-ACCAAATAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2541935 106 -   2996164 AGAGATATTTTCATACAGAGAAGTTGGCTAAACAACA--TTCTTTAAACGTTAGGAAAATGttg-----ttttattatttattattttttaaa--------ttttcttttt-ACCAAATAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     307579 107 +    766320 AGAAATATTTTCATACAGAGAAGTTGGCTAAACAACA--TTCTTTAAATGTAAGGAAAATGttg-----ttttattatttattattttttaaa--------ttttctttttCACCAAATAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28796019 106 -  71996105 AGAGATATTTTCATACAGAGAAGTTGGCTAAACAACA--TTCTTTAAACGTTAGGAAAATGttg-----ttttattatttattatttttaaat--------ttttcttttt-ACTAAATAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     278061 106 -    352859 AGAAATATTTTCATACAGAGAAGTTGGCTAAACAACA--TTCTTTAAATGTAAGGAAAATGttg-----ttttattatttattattttttaaa--------ttttcttttt-ACCAAATAGA
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2082459  70 -   2232465 GAAAATCATTTACTACAGTTTAGTTTGCTAACTA------TCTTCAAA-GTTAACAGAACAT--------------------------------------------ATTTT-CCCATATGGG
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57647990 120 -  94987271 AAAAATCATGTCACAGAGAGAAGTGTGGCAAACAAAATGTTCTCTAAAACTCAGG-GAATGTTGACCTCTTGTTTGATCTATTGTTCCTTGAGATTTTGTTTGTTTTTTTT-TTCAAATATA
i mm10.chr17               I 5 C 0
s dasNov3.JH569098           141364  66 -    254539 --GAATAATTTAGGAGAGCAGAGTCT-----CTAATT--TTCTTTAAAACTTAGAAAGACATCA-----CTTT-CAATGGA-----------------------------------------
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     412860  75 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2408114 553 -   3067355 I

a score=273075.000000
s hg38.chr6_GL000254v2_alt   660126 41 +   4827813 TTTTTGATACAATTTTATTTTATGGGTCAGAGAACCAAAAA
s panTro5.chr6             29633550 41 + 175400573 TTTTTGATACAATTTTATTTTATGGGTCAGAGAACTAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29871753 41 + 173848474 TTTTTGATACAATTTTATTTTATGGGTCAGAGAACCAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5674680 41 +   6154872 TTTTTGATACAATTTTATTTTATGGGTCAGAGAACCAAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29892586 41 + 172585720 TTTTTGATACAATTTTATTTTATGGGTCAGAGAACCAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29556243 41 - 170955103 TTTTTGATACAATTTTATTTTATGGGTCAGAGAACCAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2542041 41 -   2996164 TTTTTGATACAATTTTATTTTATGGGTCAGAGAACCAAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     307686 41 +    766320 TTTTTGATACAATTTTATTTTATGGGTCAGAGAACCAAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28796125 41 -  71996105 TTTTTGATACAATTTTATTTTGTGGGTCAGAGAACCAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     278167 40 -    352859 TTTTTGACACAATTTTGTTTTATGGGTCAGAGAACC-AAAA
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     412935 41 +    730504 TTTTTGATATAACTTTGTTTTCTGGGTCAGAGAACCAAAAA
i proCoq1.NW_012152574v1   I 75 I 361
s otoGar3.GL873742          2082529 39 -   2232465 CTTTTGATATAACTT--TTTTCTGTGTCAGAAAACCAAAAA
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57648110 41 -  94987271 TTTTTGATGCTATTCTATTTTATGGATTAGAAAAACTAGAA
i mm10.chr17               C 0 I 3
s dasNov3.JH569098           141430 41 -    254539 TTTTTTATATAATTATGTTTTATGATACAGAAAATCAAAAA
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2408114 553 -   3067355 I

a score=455363.000000
s hg38.chr6_GL000254v2_alt   660167 92 +   4827813 TA--ATATTTTATCTATCATTTGTACTTTTAAAAGACATGGTAAAAGTTTTGAAAAATATGCAACATACATGGCTATCAAATAAAGCTACTTTA
s panTro5.chr6             29633591 92 + 175400573 TA--ATATTTTAGCTATCATTTGTACTTTTAAAAGACATGGTAAAAGTTTTGAAAAATATGCAACATACATGGCTATCAAAGAAAGCTACTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29871794 92 + 173848474 TA--ATATTTTAGCTATCATTTGTACTTTTAAAAGACATGGTAAAAGTTTTGAAAAATATGCAACATACATGGCTATCAAAGAAAGCTACTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5674721 92 +   6154872 TA--ATATTTTAGCTATCATTTGTACTTTTAAAAGACATGGTAAAAGTTTTGAAAAATATGCAACATACATGGCTATCAAAGAAAGCTACTTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29892627 92 + 172585720 TA--ATATTTTAGCTATCATTTGTACTTTTAAAAGACATGGTAAAAGTTTTGAAAAATATGCAACATACATGGCTATCAAAGAAAGCTACTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29556284 92 - 170955103 TA--ATATTTTAGCTATCATTTGTACTTTTAAAAGACATGGTAAAAGTTTTGAAAAATATGCAACATACATGGCTATCAAAGAAAGCTACTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2542082 92 -   2996164 TA--CTATTTTAGCTATCATTTGTACTTTTAAAAGACATGGTAAAAGTTTTGAAAAATATGCAACATACATGGCTATCAAAGAAAGCTACTTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     307727 94 +    766320 TAATATATTTTAGCTATCATTTGTACTTTTAAAAGACATGGTAAAAGTTTTGAAAAATATGCAACATACATGGCTATCAAAGAAAGCTATTTTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28796166 92 -  71996105 TA--ATATTTTAGCTATCATTTGTACTTTTAAAAGACATGGTAAAAGTTTTGAAAAATATGCAACATACATGGCTATCAAAGAAAGCTACTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     278207 92 -    352859 TA--ATATTTTAGCTATCATTTGTACTTTTAAAAGACATGGTAAAAGTTTTGAAAAATATGCAACATACATGGCTATCAAAGAAAGCTACTTTA
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2082568 90 -   2232465 TC--ATATTTGGCATATTATTTGTATTTTAAACAGAAATAGT--AATTTTTTAAATACACAAAATATACAAGGCCATCAAAGAAAACTATTTTT
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57648154 84 -  94987271 CA--GTGTTTGGAAGATTATTTGCATTTTTAAAAA--GTAGTAAGGATTTT---AAATATAC--TGTGCCTAGCTACCAAAGAAAGTTACTCT-
i mm10.chr17               I 3 C 0
s dasNov3.JH569098           141471 88 -    254539 --CTATATGTGCTTTATCATCTCTATTTTAAACAAGGATGGTAAATTTCTTTCAAAACA--CAATATATGTGGCTATGAA--AAATCTTTTCTA
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     412976 361 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2408114 553 -   3067355 I

a score=904689.000000
s hg38.chr6_GL000254v2_alt   660259 166 +   4827813 AATTGTTTGGAGGCAGTCC-------------TTCATGGAGGTGTGGTAAAGGTTAGATAATCTCTCAAAATTTCCT-CTAGCTGTAAAGCCAAATATCCTATGGGCTCCCTAGAG-ATGTTTCCTAGTTCATTA----TTTTTTTTAACTTTAGTCACA-CCAAATCCTTTTCTTCTCTCATCAG
s panTro5.chr6             29633683 166 + 175400573 AATTGTTTGGAGGCAGTCC-------------TTCATGGAGGTGTGGTAAAGGTTAGATAATCTCTCAAAATTTCCT-CTAGCTGTAAAGCCAAATATCCTATGGGCTCCCTAGAG-ATGTTTCCTAGTTCATTA----TTTTTTTTAACTTTAGTCACA-CCAAATCATTTTCTTCTCTCATCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29871886 165 + 173848474 AATTGTTTGGAGGCAGTCC-------------TTCATGGAGGTGTGGTAAAGGTTAGATAATCTCTCAAAATTTCCT-CTTGCTGTAAAGCCAAATATCCTATGGGCTCCCTAGAG-ATGTTTCCTAGTTCATTA-----TTTTTTTAACTTTAGTCACA-CCAAATCATTTTCTTCTCTCATCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5674813 166 +   6154872 AATTGTTTGGAGGCAGTCC-------------TTCATGGAGGTGTGGTAAAGGTTAGATAATCTCTCAAAATTTCCT-CTAGCTGTAAAGCCAAATATCCTATGGGCTCCCTAGAG-ATGTTTCCTAGTTCATTA----TTTTTTTTAACTTTAGTCACA-CCAAATCATTTTCTTCTCTCATCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29892719 168 + 172585720 GGTTGTTTGAAGGCAGTCC-------------TTCATGGAGGTGTGGTAAAGGTTAGATAATTTCTCAAAATTTCCT-CCAGCTGTAAAGCCAAATACCCTATGGGCTCCCTAGAA-GTGTTTCCTAGTTCATTA---TTTTTTTTTAACTTTAGTCACACCCAAATCATTTTGTTCTCTCATCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29556376 167 - 170955103 GGTTGTTTGAAGGCAGTCC-------------TTCATGGAGGTGTGGTAAAGGTTAGATAATTTCTCAAAATTTCCT-CCAGCTGTAAAGCCAAATACCCTATGGGCTCCCTAGAA-GTGTTTCCTAGTTCATTA---TTTTTTTTTAACTTTAGTCACA-CCAAATCATTTTGTTCTCTCATCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2542174 167 -   2996164 AGTTGTTTGAAGGCAGTCC-------------TTCATGGAGGTGTGGTAAAGGTTAGATAATTTCTCAAAATTTCCT-CCAGCTGTAAAGCCAAATACCCTATGGGCTCTCTAGAA-GTGTTTCCTAGTTCATTA---TTTTTTTTTAACTTTAGTCACA-CCAAATCATTTTGTTCTCTCATCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     307821 167 +    766320 AGTTGCTTGAAGGCAGTCC-------------TTCATGGAGGTGTGGTAAAGGTTAGATAATTTCTCAAAATTTCCT-CCAGTTGTAAAGCCAAATACCCTATGGGCTCCCTAGAA-GTGTTTCCTAGTTCATTA---TTTTTTTTTAACTTTAGTCACA-CCAAATCATTTTGTTCTCTCATCAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28796258 167 -  71996105 AGTTGTTTGAAGGCAGTCC-------------TTCATGGAGGTGTGGTAAAGGTTAGATAATTTCTCAAAATTTCCT-CCAGCTGTAAAGCCAAATACCCTATGGGCTCCCTAGAA-GTGTTTCCTAGTTCATTA---TTTTTTTTTAACTTTAGTCACA-CCAAATCATTTTGTTCTCTCATCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     278299 167 -    352859 AGTTGCTTGAAGGCAGTCC-------------TTCATGGAGGTGTGGTAAAGGTTAGATAATTTCTCAAAATTTCCT-CCAGTTGTAAAGCCAAATACCCTATGGGTTCCCTAGAA-GTGTTTCCTAGTTCATGA---TTTTTTTTTAACTTTAGTCACA-CCAAATCATTTTGTTCTCTCATCAG
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2408667 165 -   3067355 AATTATTTGAAGGCAGTCC-------------TTCATGGAGGTATAGTAAAAGTTAGATGGTTTTTCAAAATTTCTTCCCAGCTATGAAGCCAAAAAACCCAT-GGCTCTCTAGAA-GTGTTCCCTTGTTCATTA---TTTTTTTT--ACTCTAGTCACA-TCAAATTATATTCTTCTCTCCTCAG
i colAng1.NW_012115566v1   I 553 I 174
s otoGar3.GL873742          2082658 184 -   2232465 AATTATCTGATGGCTATCCTTTATGGAAATGATTTATGGAAGTGTAGCAAAGATTAGATAATTTTTCAAAATATTTG-CCAGCTATAGAGCCAAAACTCCCAAGGGATCTCCAGAA-CTGTTCCCTAGCTCATTAATTTTTTTTTTTTACTCTAGTCACAATCTAATTATTTTCTTGTTCCTCCAG
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57648238 134 -  94987271 ----GTTAGGAGATGGTCT-------------TTTGAGGAGGTGGAGTAGAGGTTAA------TTCTAAAATTCATC-TCGATGGTAAAGCCAAAAGTGTCATGGGCTCTCAAAGA------------CTCCCTA--------CTTTCAACCTGGTCATG-TCAAATAAACTTCCTCTC-------
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           141559 165 -    254539 AGACTTTGGGAATCAACAC-------------AT-ATCTAAATGTATTAAAGATTAGATAATTTCTCCAAATTTTAC-ACACTTACAAAACATAGAATCCCATGGGTTCCCAAAAAAGAGCTTCCAAGTTCATTC---AATTTTTT--ACTCTAGTAACC-TCAAATCACTCCCTTTTCCCCTTCA
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     412976 361 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=505458.000000
s hg38.chr6_GL000254v2_alt   660425 115 +   4827813 CAATTTTTCA-ACCTCGAATTATTCCCCATTTATAGGAAACACTCTAATGTCTGCATCTTTCTTCTGATTTCCTATTGGTTCTTATTCTTT-TCTAAGTGC-CTGCCATTTCTATGGA
s panTro5.chr6             29633849 115 + 175400573 CAATTTTTCA-ACCTCGAATTATTCCCCATTTATAGGAAACACTCTAATGTCTGCATCTTTCTTCTGATTTCCTAGTGGTTCTTATTCTTT-TCTAAGTGC-CTGCCATTTCTATGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29872051 115 + 173848474 CAATTTTTCA-ACCTCGAATTATTCCCCATTTATAGGAAACACTCTAATGTCTGCATCTTTCTTCTGATTTCCTATTGGTTCTTATTCTTT-TCTAAGTGC-CTGCCATTTCTATGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5674979 115 +   6154872 CAATTTTTCA-ACCTTGAATTATTCCCCATTTATAGGAAACACTCTAATGTCTGCATCTTTCTTCTGATTTCCTATTGGTTCTTATTCTTT-TCAAAGTGC-CTGCCATTTCTATGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29892887 115 + 172585720 TAATTTTTCA-ACCTTGAATTATTCCCCGTTTATAGGAAACACTCTAATATCTGCATCTTTCTTCTGACTTCCTAATAGTTCTTATTCTTT-TCTAAGTGC-CTTCCATTTCTAAGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29556543 115 - 170955103 TAATTTTTCA-ACCTTGAATTATTCCCCGTTTATAGGAAACACTCTAATATCTGCATCTTTCTTCTGACTTCCTAATAGTTCTTATTCTTT-TCTAAGTGC-CTTCCATTTCTAAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2542341 115 -   2996164 TAATTTTTCA-ACCTTGAATTATTCCCCGTTTATAGGAAACACTCTAATATCTGCATCTTTCTTCTGACTTCCTAATAGTTCTTATTCTTT-TCTAAGTGC-CTCCCATTTCTAAGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     307988 115 +    766320 TAATTTTTCA-ACCTTGAATTATTCCCCGTTTATAGGAAACACTCTAATGTCTGCATCTTTCTTCTGATTTCCTAATAGTTCTTATTCTTT-TCTAAGTGC-CTTCCATTTCTAAGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28796425 115 -  71996105 TAATTTTTCA-ACCTTGAATTATTCCCTGTTTATAGGAAACACTCTAATGTCTGCATCTTTCTTCTGACTTCCTAATAGTTCTTATTCTTT-TCTAAGTGC-CTTCCATTTCTAAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     278466 115 -    352859 TAATTTTTCA-ACCTTGAATTATTCCCCGTTTATAGGAAACACTCTAATGTCTGCATCTTTCTTCTGATTTCCTAATAGTTCTTATTCTTT-TCTAAGTGC-CTTCCATTTCTAAGGA
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2082842  89 -   2232465 TGATTTCTCA-A-----AACCTTTTT---TTTAAAAAAAGCACCTCAATGTCATCATCTATATTCTTAC--------AGTTCTCATTGTTT-TC-----------CTACTCCTATAAG
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57648372 102 -  94987271 -----------AACTCCAACCATTTCTTTCTTTTAGGAAGTGGCT--ATGTATGTCTATCATTTCAGACTTTCTTCTAGTTCCTACTTTCTACCCATGTGCTCCAACACTTCAAG---
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           141724 115 -    254539 TAATTTCTCATAACTTGAATGATTCCCTCTTCATAGAAAGCTCCCCAATATCTGCATCTCTATACAGAATACCTTGCAGTT-TTGTTCTTT-TAACAGTTC-CTCCCACTCCTCTAAG
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     412976 361 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2408832 174 -   3067355 I

a score=368897.000000
s hg38.chr6_GL000254v2_alt   660540 64 +   4827813 TTTCCCACACATTCTTGCTTCTTTTCTCCTAATATGCAAAAGTTAATCCACTACATTTGTACAA
s panTro5.chr6             29633964 64 + 175400573 TTTCCCACACATTCTTGCTTCTTTTCTCCTAATATGCAAAAGTTAATCCACTACATTTGTACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29872166 64 + 173848474 TTTCCCACACATTCTTGCTTCTTTTCTCCTAATATGCAAAAGTTAATCCACTACATTTGTACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5675094 64 +   6154872 TTTCCCACACATTCTTGCTTCTTTTCTCCTAATATGCAAAAGTTAATCCACTACATTTGTACAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29893002 64 + 172585720 TTTCCCACACATTCTTGCTTCTTTCCTCCTAATATGCAAAAGTTAATCCACTACGTTTGTACAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29556658 64 - 170955103 TTTCCCACACATTCTTGCTTCTTTCCTCCTAATATGCAAAAGTTAATCCACTACGTTTGTACAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2542456 64 -   2996164 TTTCCCACACATTCTTGCTTCTTTCCTCCTAATATGCAAAAGTTAATCCACTACGTTTGTACAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     308103 64 +    766320 TTTCCCACACATTCTTGCTTCTTTCCTCCTAATATGCAAAAGTTAATCCACTACGTTTGTACAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28796540 64 -  71996105 TTTCCCACACATTCTTGCTTCTTTCCTCCTGATATGCAAAAGTTAATCCACTACGTTTGTACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     278581 64 -    352859 TTTCCCACACATTCTTGCTTCTTTCCTCCTAATATGCAAAAGTTAATCCACTATGTTTGTACAA
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     413337 64 +    730504 TTTCCCACACATTCTTGCTTCTTCTCTCTCAATATACAAGATGTAATCCACAACATGTTTACAT
i proCoq1.NW_012152574v1   I 361 C 0
s otoGar3.GL873742          2082931 64 -   2232465 TTTCCCAAACATTCTTGCTTCTTCTCTCTCAATATTCAAGATATAATTCATAAGACATTTACAT
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57648474 62 -  94987271 TGTCTCATATGTCCTGGCTTGTCTT-TCCTAAGATGTAAAAGCT-TCACAGGGCATCTATTTAA
i mm10.chr17               C 0 I 2
s dasNov3.JH569098           141839 54 -    254539 TTTCTCACATATCATTACTTCTTCCTTCCCAAAAC----------AGCCACTACATCTAGAAAT
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2408832 174 -   3067355 I

a score=341878.000000
s hg38.chr6_GL000254v2_alt   660604 46 +   4827813 GAAAGGAACAAACAGGAAGCTATTTCACAAAATTATGTCTGCTTTT
s panTro5.chr6             29634028 46 + 175400573 GAAAGGAACAAACAGGAAGCTATTTCACAAAATTATGTCTGCTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29872230 46 + 173848474 GAAAGGAACAAACAGGAAACTATTTCACAAAATTATGTCTGCTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5675158 46 +   6154872 GAAAGGAACAAACAGGAAACTATTTCACAAAATTATGTCTGCTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29893066 46 + 172585720 GAAAGGAACAAACAGGAAGCTATTTCACAAAATTATGTCTGCTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29556722 46 - 170955103 GAAAGGAACAAACAGGAAGCTATTTCACAAAATTATGTCTGCTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2542520 46 -   2996164 GAAAGGAACAAACAGGAAGCTATTTCACAAAATTATGTCTGCTTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     308167 46 +    766320 GAAAGGAACAAACAGGAAGCTATTTCACAAAATTATGTCTGCTTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28796604 46 -  71996105 GAAAGGAACAAACAGGAAGCTATTTCACAAAATTATGTCTGCTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     278645 46 -    352859 GAAAGGAACAAACAGGAAGCTATTTCACAAAATTACGTCTGCTTTT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2409006 46 -   3067355 GAAAAGAACAAAGAAGAAGCTACTTCACAAAATTATGTCTGCTTTT
i colAng1.NW_012115566v1   I 174 I 133
s proCoq1.NW_012152574v1     413401 46 +    730504 GAAAGGAAAAAAGAGGAATCTACTTCATAAAATTATATCTGCTTTT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2082995 46 -   2232465 GAAAGGAGAAAATAGGGTTATACTTCACAAAGTTATGTCTGCTTTT
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57648538 45 -  94987271 AAAAGGAACAGAAAAGAAGCTGCTTCACCAA-TCCTATCTGCCACT
i mm10.chr17               I 2 C 0
s dasNov3.JH569098           141893 45 -    254539 GAAAAGGACAAAGAGGAAGCTACCATG-AAAAGTATGTATTCTTTT
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I

a score=269481.000000
s hg38.chr6_GL000254v2_alt   660650 46 +   4827813 GTCAGTGCACCTATAGAAGATAATCCCAAGTACTTTGCAAATAATG
s panTro5.chr6             29634074 46 + 175400573 GTCAGTGCACCTATAGAAGATAATCCCAAGTACTTTGCAAATAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29872276 46 + 173848474 GTCAGTGCACCTATAGAAGATAATCCCAAGTACTTTGCAAATAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5675204 46 +   6154872 GTCAGTGCACCTATAGAAGATAATCCCAAGTACTTTGCAAATAATG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29893112 46 + 172585720 GTCAGTGCACCTATAGAAGATAATCCCAAGTACTTTGCAAATAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29556768 46 - 170955103 GTCAGTGCACCTATAGAAGATAATCCCAAGTACTTTGCAAATAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2542566 46 -   2996164 GTCAGTGCACCTATAGAAGATAATCCCAAGTACTTTGCAAATAATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     308213 46 +    766320 GTCAGTGCACCTATAGAAGATAATCCCAAGTACTTTGCAAATAATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28796650 46 -  71996105 GTCAGTGCACCTGTAGAAGATAATCCCAAGTACTTTGCAAATAATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     278691 46 -    352859 GTCAGTGCACCTATAGAAGATAATCCCAAGTACTTTGCAAATAATG
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     413447 46 +    730504 ATCAGTTTACCTAATGGAGATAATACCAGATACTTTGCACATAATG
i proCoq1.NW_012152574v1   C 0 I 28
s otoGar3.GL873742          2083041 46 -   2232465 ATCAGTTTATCAAATGGAGATAATGTCAGCTACTTTGTAAATAATG
i otoGar3.GL873742         C 0 I 1
s mm10.chr17               57648583 32 -  94987271 GTCAGTACAGCCA---AAGATGTTGCTGGATCCTT-----------
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           141938 45 -    254539 ATGAGTGTACTTA-AGGAGGTAATGTCAGGTACTTTGCAAATAAGA
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409052 133 -   3067355 I

a score=85455.000000
s hg38.chr6_GL000254v2_alt   660696 27 +   4827813 TTAG--AAAAAACCTTCAAAATATATTTC
s panTro5.chr6             29634120 27 + 175400573 TTAG--AAAAAACCTTCAAAATATATTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29872322 27 + 173848474 TTAG--AAAAGACCTTCAAAATATATTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5675250 27 +   6154872 TTAG--AAAAAACCTTCAAAATATATTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29893158 27 + 172585720 TAAG--AAAAAATCTTCAAAAGATATGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29556814 27 - 170955103 TAAG--AAAAAATCTTCAAAAGATATGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2542612 27 -   2996164 TAAG--AAAAAATCTTCAAAAGATATGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     308259 27 +    766320 TAAG--AAAAAACCTTCAAAAGATATGTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28796696 28 -  71996105 TAAGA-AAAAAACCTTCAAAAGATATGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     278737 27 -    352859 TAAG--AAAAAACCTTCAAAAGATATGTC
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2083088 25 -   2232465 GTAG--GGGGTGAATTCAAAGGTTTTC--
i otoGar3.GL873742         I 1 C 0
s mm10.chr17               57648615 22 -  94987271 ---G--ATAAAATACCCAAAAGAATTC--
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           141983 25 -    254539 ----GTAAAGAAGACTCAAAATGTTTTTC
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     413493 28 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409052 133 -   3067355 I

a score=407125.000000
s hg38.chr6_GL000254v2_alt   660723 67 +   4827813 TGCCTTTCAGTAAACAGTATAAATTTAGTCAAATATTAAACCTCATTATAATTATCTTACTTATAAT
s panTro5.chr6             29634147 67 + 175400573 TGCCTTTCAGTAAACAGTATAAATTTAGTCAAATATTAAACCTCATTATAATTATCTTACTTATAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29872349 67 + 173848474 TGCCTTTCAGTAAACAGTATAAATTTAGTCAAATATTAAACCTCATTATAATTATCTTACTTATAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5675277 67 +   6154872 TGCCTTTTAGTAAACAGTATAAATTTAGTCAAATATTAAACCTCATTATAATTATCTTACTTATAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29893185 67 + 172585720 TGCCTTTCAATAAACAGTATAAATTTAGTCAAATATTAAACCTCATTATAATTATCTTACTTATAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29556841 67 - 170955103 TGCCTTTCAATAAACAGTATAAATTTAGTCAAATATTAAACCTCATTATAATTATCTTACTTATAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2542639 67 -   2996164 TGCCTTTCAATAAACAGTATAAATTTAGTCAAATATTAAACCTCATTATAATTATCTTACTTTTAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     308286 67 +    766320 TGCCTTTCAATAAACAGTATAAATTTAGTCAAATGTTAAACCTCATTATAATTATCTTACTTATAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28796724 67 -  71996105 TGCCTTTCAATAAACAGTATAAATTTAGTCAAATATTAAACCTCATTATAATTATCTTACTTTTAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     278764 67 -    352859 TGCCTTTCAATAAACAGTATAAATTTAGTCAAATGTTAAACCTCATTATAATTATCTTACTTATAAT
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     413521 67 +    730504 TGCCTTTCAGTGAACGGTACAAACTTAGTCAAACATTAACACTTATTATAATTAACTTATCTATAAT
i proCoq1.NW_012152574v1   I 28 I 119
s otoGar3.GL873742          2083113 67 -   2232465 TGCCTTTCAGTAAATGGTACAAACTTAATCAAACATTAACCCTGATTACAAATAATTTATTTGTAAT
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57648637 67 -  94987271 TTTATATCGGTGATCAGTACAGATTTAGTTTTAAGTCATGTCTTATAGTGAACTGCTCATTTATAAT
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           142008 67 -    254539 TACCTTCCTGtaaaatattaaaatttacttaaattataaactttattgtaattaaCTCATTTTCATT
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409052 133 -   3067355 I

a score=362024.000000
s hg38.chr6_GL000254v2_alt   660790 80 +   4827813 CCCTCATGTGTTTTAACAGTTACT--GAA-AAAATTCTATTATTTCAATTCTGCAAAAGAAAGAAAAATGAATACATTTCTTT
s panTro5.chr6             29634214 80 + 175400573 CCTTCATGTGTTTTAACAGTTACT--GAA-AAAATTCTATTATTTCAATTCTGCAAAAGAAAGAAAAATGAATACATTTCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29872416 80 + 173848474 CCCTCATGTGTTTTAACAGTTACT--GAA-AAAATTCTATTATTTCAATTCTGCAAAAGAAAGAAAAATGAATACATTTCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5675344 80 +   6154872 CCCTCATGTGTTTTAACAGTTACT--GAA-AAAATTCTATTATTTCAATTCTGCAAAAGAAAGAAAAATGAATACATTTCTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29893252 80 + 172585720 CCCTTGTGTGTTTTAACAGTTACT--AAA-AAAATTCTATTATTTCAATTCTGCAAAAGAAAGAAAAATGAATACATTTCGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29556908 80 - 170955103 CCCTTGTGTGTTTTAACAGTTACT--AAA-AAAATTCTATTATTTCAATTCTGCAAAAGAAAGAAAAATGAATACATTTCGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2542706 82 -   2996164 CCCTCATGTGTTTTAACAGTTACTAAAAA-AAAAATCTATTATTTCAATTCTGCAAAAGAAAGAAAAATGAATACATTTCGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     308353 80 +    766320 CCCTTGTGTGTTTTAACAGTTACT--AAA-AAAATTCTATTATTTCAATTCTGCAAAAGAAAGAAAAATGAATACATTTTGTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28796791 81 -  71996105 CCCTCATGTGTTTTAACAGTTACT-AAAA-AAAATTCTATTATTTCAATTCTGCAAAAGAAAGAAAAATGAATACATTTCGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     278831 80 -    352859 CCCTTGTGTGTTTTAACAGTTACT--AAA-AAAATTCTATTATTTCAATTCTGCAAAAGAAAGAAAAATGAATACATTTTGTT
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2083180 76 -   2232465 TTTTCAAAAGTTTGAACATCAACT--GAA-AATG-TATATTGTTCCAATGCTGTAAATGA---AACTTTAAATACATTTCTAT
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57648704 81 -  94987271 TCCTAAAGAGCTAAGTCATTCACT--GAATAAAATATTTTTAGGTCAATTTAGAAAAATAAATAAATATGAATGTATTTCCTT
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           142075 76 -    254539 TCTTTAAAAATTTCAGCA-CTACT--GA--AAAACACtattatttctaataattaagtgaa--aaaaattaatgaattacttt
i dasNov3.JH569098         C 0 I 975
e proCoq1.NW_012152574v1     413588 119 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409052 133 -   3067355 I

a score=126972.000000
s hg38.chr6_GL000254v2_alt   660870 31 +   4827813 CA--TAGAAAAT-GGAAATTTTATCTGATGGAAA
s panTro5.chr6             29634294 31 + 175400573 CA--TAGAAAAT-GGAAATTTTATCTGATGGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29872496 31 + 173848474 CA--TAGAAAAT-GGAAATTTTATCTGATGGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5675424 31 +   6154872 CA--TAGAAAAT-GGAAATTTTATCTGACGGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29893332 31 + 172585720 CA--TAGAAAAT-GGAAATTTTATTAGATGGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29556988 31 - 170955103 CA--TAGAAAAT-GGAAATTTTATTAGATGGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2542788 31 -   2996164 CA--TAGAAAAT-GGAAATTTTATTAGATGGAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     308433 31 +    766320 CA--TAGAAAAT-GGAAATTTTATTAGATGGAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28796872 31 -  71996105 CA--TAGAAAAT-GGAAATTTTATTAGATGGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     278911 31 -    352859 CA--TAGAAAAT-GGAAATTTTATTAGATGGAAA
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2083256 34 -   2232465 AGATTAAAACATGGGAAATATTATTTCATGGGAA
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57648785 27 -  94987271 AC--TAGAAGGC-AGAGTTCCT----TATGAAAA
i mm10.chr17               C 0 C 0
e dasNov3.JH569098           142151 975 -    254539 I
e proCoq1.NW_012152574v1     413588 119 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409052 133 -   3067355 I

a score=11117.000000
s hg38.chr6_GL000254v2_alt   660901 3 +   4827813 GAA
s panTro5.chr6             29634325 3 + 175400573 GAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29872527 3 + 173848474 GAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5675455 3 +   6154872 GAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29893363 3 + 172585720 GAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29557019 3 - 170955103 TAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2542819 3 -   2996164 GAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     308464 3 +    766320 GAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28796903 3 -  71996105 GAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     278942 3 -    352859 GAC
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2083290 3 -   2232465 GAA
i otoGar3.GL873742         C 0 I 4
s mm10.chr17               57648812 3 -  94987271 GTA
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           143126 3 -    254539 GAG
i dasNov3.JH569098         I 975 C 0
e proCoq1.NW_012152574v1     413588 119 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409052 133 -   3067355 I

a score=203394.000000
s hg38.chr6_GL000254v2_alt   660904 32 +   4827813 GGGGCAAATAGAGAAAACACAT--------------------------------------TTTACAAATG
s panTro5.chr6             29634328 32 + 175400573 GGGGCAAATAGAGAAAACACAT--------------------------------------TTTACAAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29872530 32 + 173848474 GGGGCAAATAGAGAAAACACAT--------------------------------------TTTACAGATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5675458 32 +   6154872 GGGGCAAATAGAGAAAACACAT--------------------------------------TTTACAAATG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29893366 32 + 172585720 GGGGCAAATAGAGCAAACACAT--------------------------------------TTTACAAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29557022 32 - 170955103 GGGGCAAATAGAGCAAACACAT--------------------------------------TTTACAAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2542822 32 -   2996164 GGGGCAAATAGAGAAAACACAT--------------------------------------TTTACAAATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     308467 32 +    766320 GGGGCAAATAGAGAAAACACAT--------------------------------------TTTACAAATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28796906 32 -  71996105 GGGGCAAATAGAGAAAACACAT--------------------------------------TTTACAAATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     278945 32 -    352859 GGGGCAAATAGAGAAAACACAT--------------------------------------TTTACAAATG
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     413707 32 +    730504 GGGACAAATAGAGAAAACACAT--------------------------------------TTTTCAAATG
i proCoq1.NW_012152574v1   I 119 I 130
s otoGar3.GL873742          2083297 32 -   2232465 TAGCCAAATAGAGAAAACACAT--------------------------------------TTTTCAAATG
i otoGar3.GL873742         I 4 C 0
s mm10.chr17               57648815 70 -  94987271 AGGTTAAATAAAGAAAACACATAAAAGGCAGAGTTTCTTATTATGAAAAGTAAAGTTAGATTAAAAAACA
i mm10.chr17               C 0 I 7
s dasNov3.JH569098           143129 32 -    254539 GGGTCATAAAGAGAAAACACAC--------------------------------------TTTTCAATTG
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409052 133 -   3067355 I

a score=423235.000000
s hg38.chr6_GL000254v2_alt   660936 100 +   4827813 AAAAAGGCTAGAAATGTGTGGCAACTTTGGAGAGAACTGGTATGAAGCCAACAGAC------CTCTGGGTTGATGGAGGAGAACCTGACTGTCAGTGTCACATTGA
s panTro5.chr6             29634360 100 + 175400573 AAAAAGGCAAGAAATGTGTGGCAACTTTGGAGAGAACTGGTATGAAGCCAACAGAC------CTCTGGGTTGATGGAGGAGAACCTGACTGTCAGTGTCACATTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29872562 100 + 173848474 AAAAAGGCAAGAAATGTGTGGCAACTTTGGAGAGAACTGGTATGAAGCCAACAGAC------CTCTGGGTTGATGGAGGAGAACCTGACTGTCAGTGTCACATTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5675490 100 +   6154872 AAAAAGGCTAGAAATGTGTGGCAACTTTGGAGAGAACTGGTATGAAGCCAACAGAC------CTCTGGGTTGATGGAGCAGAACCTGACTGTCAGTGTCACATTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29893398 100 + 172585720 AAAAGGGCTAGAAATGTGTGGCAGCTTTGGAGAGAACTGATAGGAAGCCAACAGAC------CTCTGGGTTGATCAAGGAGAACCTGACTGTCAGTGCCACATTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29557054 100 - 170955103 AAAAGGGCTAGAAATGTGTGGCAGCTTTGGAGAGAACTGATAGGAAGCCAACAGAC------CTCTGGGTCGATCAAGGAGAACCTGACTGTCAGTGCCACATTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2542854 100 -   2996164 AAAAGGGCTAGAAATGTGTGGTAGCTTTGGAGAGAACTCATAGGAAGCCAACAGAC------CTCTGGGTTGATCGAGGAGAATCTGACTGTCAGTGCCACATTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     308499 100 +    766320 AAAAGGGCTAGAAATGTGTGGCAGCTTTGGAGAGAACTGATAGGAAGCCAACAGAC------CTCTGGGTTGATCGAGGAGAACTTGACTGTCAGTGCCACATTAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28796938 100 -  71996105 AAAAGGGCTAGAAATGTGTGGCAGCTTTGGAGAGAACTGATAGGAAGCCAACAGAC------CTCTGGGTTGATCGAGGAGAACCTGACTGTCAGTGCCACATTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     278977 100 -    352859 AAAAGGGCTAGAAATGTGTGGCAGCTTTGGAGAGAACTGATAGGAAGCCAACAGAC------CTCTGGGTTGATCGACGAGAACCTGACTGTCAGTGCCACATTAA
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2083329  88 -   2232465 GAAAGAGCTGGAAACTTGTGGAAACTTTGGAGAGAGCTGATAAGAAGTC------T------TTCT---TTGA---AAGACAATATAACAGCCAGTGTCACATTAG
i otoGar3.GL873742         C 0 I 22
s mm10.chr17               57648892  99 -  94987271 AGGAGAGCTTGCAACCTGTAGTAACGTATAAGAGAGTTGGAATAAAGCAGACAGACAGACTACTTTGTCATAATACAACAGG-------TGCCAGGGACCTGCTAA
i mm10.chr17               I 7 C 0
s dasNov3.JH569098           143161  56 -    254539 ---------AAAAAAATATGGAAACTTTCCAG-----TATTTGGAGG--GACCGAT------CTGTAGT----------------------------CCACATTAA
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     413739 130 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409052 133 -   3067355 I

a score=85996.000000
s hg38.chr6_GL000254v2_alt   661036 19 +   4827813 TGAAACTAGAAGAAAAGAG
s panTro5.chr6             29634460 19 + 175400573 TGAAACTAGAAGAAAAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29872662 19 + 173848474 TGAAACTAGAAGAAAAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5675590 19 +   6154872 TGAAACTAGAAGAAAAGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29893498 19 + 172585720 TGAAACTAGAAGAAAAGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29557154 19 - 170955103 TGAAACTAGAAGAAAAGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2542954 19 -   2996164 TGAAACTAGAAGAAAAGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     308599 19 +    766320 TGAAACTAGAAGAAAAGAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28797038 19 -  71996105 TGAAACTAGAAGAGAAGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     279077 19 -    352859 TGAAATTAGAAGAAAAGAG
i manLeu1.NW_012099655v1   C 0 C 0
s mm10.chr17               57648991 19 -  94987271 AGGAACTGTGGTGAAAGTG
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           143217 19 -    254539 TGGAAGTACAGGTGAGGAA
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     413739 130 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2083417 22 -   2232465 I
e colAng1.NW_012115566v1    2409052 133 -   3067355 I

a score=53995.000000
s hg38.chr6_GL000254v2_alt   661055 17 +   4827813 -A--AAATTCACTTG-GATAC
s panTro5.chr6             29634479 19 + 175400573 -AGAAAATTCACTTG-GATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29872681 19 + 173848474 -AGAAAATTCACTTG-GATAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5675609 19 +   6154872 -AGAAAATTCACTTG-GATAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29893517 20 + 172585720 -AGAAAATTCACTTGGGATAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29557173 20 - 170955103 -AGAAAATTCACTTGGGATAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2542973 20 -   2996164 -AGAAAATTCACTTGAGATAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     308618 20 +    766320 -AGAAAATTCACTTGAGATGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28797057 20 -  71996105 -AGAAAATTCACTTGAGATAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     279096 20 -    352859 -AGAAAATTCACTTGAGATGC
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2083439 18 -   2232465 ---GAATTTCACTGAAGGTAC
i otoGar3.GL873742         I 22 C 0
s mm10.chr17               57649010 13 -  94987271 ----AGTTCAACTTG-GA---
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           143236 20 -    254539 GGTGCACTTCACTGGAGGTA-
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     413739 130 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409052 133 -   3067355 I

a score=126429.000000
s hg38.chr6_GL000254v2_alt   661072 21 +   4827813 AATGTTTCTTCACATCTAAAA
s panTro5.chr6             29634498 21 + 175400573 AATGTTTCTTCACATCTAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29872700 21 + 173848474 AATGTTTCTTCACATCTAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5675628 21 +   6154872 AATGTTTCTTCACATCTAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29893537 21 + 172585720 AATGTTTCTTCACATCTAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29557193 21 - 170955103 AATGTTTCTTCACATCTAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2542993 21 -   2996164 AATGTTTCTTCACATCTAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     308638 21 +    766320 AATGTTTCTTCACATCTAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28797077 21 -  71996105 AATGTTTCTTCACATCTAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     279116 21 -    352859 AATGTTTCTTCACATCTAAAA
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     413869 21 +    730504 AATGTTTCTTAATATCTGAAG
i proCoq1.NW_012152574v1   I 130 C 0
s otoGar3.GL873742          2083457 21 -   2232465 AATATTTCTAAATATCTGAAG
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57649023 20 -  94987271 -ACATACCTTTATAGCTGAAG
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           143256 21 -    254539 GTTATGTCTTAATACATGAAG
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409052 133 -   3067355 I

a score=291076.000000
s hg38.chr6_GL000254v2_alt   661093 44 +   4827813 AGTGAGCTTATTTCAGGCAAAATAAAAATAAGACTTAAGAAAAT
s panTro5.chr6             29634519 44 + 175400573 AGTGAGTTTATTTCAGGCAAAATAAAAATAAGACTTAAGAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29872721 44 + 173848474 AGTGAGTTTATTTCAGGCAAAATAAAAATAAGACTTAAGAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5675649 44 +   6154872 AGTGAGTTTATTTCAGGCAAAATAAAAATAAGACTTAAGAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29893558 43 + 172585720 AGTGAG-TTATTTCAGGCAAAGTAAAAATAAGCCTTAAGAAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29557214 43 - 170955103 AGTGAG-TTATTTCAGGCAAAGTAAAAATAAGCCTTAAGAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2543014 44 -   2996164 AGTGAGTTTATTTCAGGCAAAATAAAAATAAGCCTTAAGAAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     308659 44 +    766320 AGTGAGTTTATTTCAGGCAAAACAAAAATAAGCCTTAAGAAAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28797098 44 -  71996105 AGTGAGTTTATTTCAGGCAAAACAAAAATAAGCTTTAAGAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     279137 44 -    352859 AGTGAGTTTATTTCAGGCAAAACAAAAATAAGCCTTAAGAAAAT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2409185 43 -   3067355 AGTGAGTTTATTTCAGGCAAA-TAAAAACAGAACTTAAGAAAAT
i colAng1.NW_012115566v1   I 133 C 0
s proCoq1.NW_012152574v1     413890 44 +    730504 AGTGAGTTTATTTCAGGAAAAATAAAAACAGGAGTTAAGAAAAT
i proCoq1.NW_012152574v1   C 0 I 365
s otoGar3.GL873742          2083478 42 -   2232465 AGTGAGTTTATTTCAGGGAAAATAAAAACAAGACTTAAGAAA--
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57649043 38 -  94987271 GGTGGATTTATTTCTGTCAAACTGAA---ATGATTTCAAAT---
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           143277 44 -    254539 AGTAAGTTTGTATCCATCAAAATAAAAACAGGACCAAAGAAAAC
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I

a score=36964.000000
s hg38.chr6_GL000254v2_alt   661137 18 +   4827813 -GCATCACAAGAGA-----AGACA
s panTro5.chr6             29634563 18 + 175400573 -GCATCACAAGAGA-----AGACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29872765 18 + 173848474 -GCATCACAAGAGA-----AGACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5675693 18 +   6154872 -GCATCACAAGAGA-----AGACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29893601 13 + 172585720 -GCATCACAAGACA----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29557257 13 - 170955103 -GCATCACAAGACA----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2543058 13 -   2996164 -GCATCACAAGACA----------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     308703 13 +    766320 -GCATCACAAGACA----------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28797142 13 -  71996105 -GCGTCACAAGACA----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     279181 13 -    352859 -GCATCACAAGACA----------
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2409228 18 -   3067355 -AGATCACAAGAGAAGACA-----
i colAng1.NW_012115566v1   C 0 I 1099
s otoGar3.GL873742          2083520 16 -   2232465 ---ATTATAAGAGA-----AGACA
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57649081 18 -  94987271 -ATGTCATAAGACA-----AAAGT
i mm10.chr17               C 0 I 1
s dasNov3.JH569098           143321 14 -    254539 AGGTGTAAAAGATA----------
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     413934 365 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=1437143.000000
s hg38.chr6_GL000254v2_alt   661155 337 +   4827813 GAACTTTCAGTGGTCTAAATTCTTAGATACTTT-AGAAGAAGACACTA-TTGGGTAAAATGAAGGAAGAATTGTTGAGTCTAT-TGGAAGAGTTTTTCTTATTCAGAGATTCAGGGGTGT--GAAAAAGGAAAAAGTCTCAGTG-CAACTGGAAACTAAAGGAACAATAACATTTGTCATCAAGTAAGTAATTTGGGA--T-TTACTTTGAAAAAATT-TAAAGGCTTAGGT----AGAAGAA-ACTAAGCACATTATCTGATATAGCAGTGATAAAACTTCAAATATACCTCAGGC-----TAATATTTGATTGATGTA--TTATTTT-----------TTCCTTTCC---CAG-TAGAGCTCCATGACAT----------------TG
s panTro5.chr6             29634581 353 + 175400573 GAATTTTCAGTGGTCTAAATTCTTAGATACTTT-AGAAGAAGACACTA-TTGGGTAAAATGAAGGAAGAATTGTTGAGTCTAT-TGGAAGAGTTTTTCTTATTCAGAGATTCAGGGGTGT--GAAAAAGGAAAAAGTCTCAGTG-CAACTGGAAACTAAAGGAACAATAACATTTGTCATCAAGTAAGTAATTTGGGA--T-TTACTTTGAAAAAATT-TAAAGGCTTAGGT----AGAAGAA-ACTAAGCACATTATCTGATATAGCAGTGATAAAACTTCAAATATACCTCAGGT-----TAATATTTGATTGATGTA--TTATTTT-----------TTCCTTTCT---CAG-TAGAGCTCCATGACAGAGCTTCATTTTACCCATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29872783 353 + 173848474 GAATTTTCAGTGGTCTAAATTCTTAGATACTTT-AGAAGAAGACACTA-TTGGGTAAAATGAAGGAAGAATTGTTGAGTCTAT-TGGAAGAGTTTTTCTTATTCAGAGATTCAGGGGTGT--GAAAAAGGAAAAAGTCTCAGTG-CAACTGGAAACTAAAGGAACAATAACATTTGTCATCAAGTAAGTAATTTGGGA--T-TTACTTTGAAAAAATT-TAAAGGCTTAGGT----AGAAGAA-ACTAAGCACATTATCTGATATAGCAGTGATAAAACTTCAAATATACCTCAGGT-----TAATATTTGATTGATGTA--TTATTTT-----------TTCCTTTCC---CAG-TAGAGCTCCATGACAGAGCTTCATTTTACCCATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5675711 337 +   6154872 GAATTTTCAGTGGTCTAAATTCTTAGATACTTT-AGAAGAAGACACTA-TTGGGTAAAATGAAGGAAGAATTGTTGAGTCTAT-TGGAAGAGTTTTTCTTATTCAGAGATTCAGGGGTGT--GAAAAAGGAAAAAGTCTCAGTG-CAACTGGAAACTAAAGGAACAATAACATTTGTCATCAAGTAAGTAATTTGGGA--T-TTACTTTGAAAAAATT-TAAAGGCTTAGGT----AGAAGAA-ACTAAGCACATTATCTGATATAGCAGTGATAAAACTTCAAATATACCTCAGGT-----TAATATTTGATTGGTGTA--TTATTTT-----------TTCCTATCC---CAG-TAGAGCTCCATGACAT----------------TG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29893614 338 + 172585720 GGCTTTTCAGTGGTCTAAATTCATAAATACTTT-AGAAGAAGACACTA-TTGGATAAAATGAAGGAAGAATTGTTGAGTCTAT-TGGAAGAGCTTTTCTTATTCAGAGATTCAGAGGTGT--GAAAAAGGAAAATGTCCCAGTG-CAACTGGCAACTAGAGGAACAATAATGTTTGTCATGAAGTAAGTAAATTGGGA--T-TTACTTTGAAAAAAAT-TAAAGGCTTAGAT---AAGAAGAA-ACTAAGCACATTATCTGATATAGCAGTGATAAAACTTCAAATATACCTCAGGT-----TAATATTTGATTGATGTA--TTTTTTT-----------TTCCTATCC---CAG-TAGAGCTCCATGACAT----------------TG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29557270 339 - 170955103 GGCTTTTCAGTGGTCTAAATTCATAAATACTTT-AGAAGAAGACACTA-TTGGATAAAATGAAGGAAGAATTGTTGAGTCTAT-TGGAAGAGCTTTTCTTATTCAGAGATTCAGAGGTGT--GAAAAAGGAAAATGTCCCAGTG-CAACTGGCAACTAGAGGAACAATAATGTTTGTCATGAAGTAAGTAAGTTGGGA--T-TTACTTTGAAAAAAAT-TAAAGGCTTAGAT---AAGAAGAA-ACTAAGCACATTATCTGATATAGCAGTGATAAAACTTCAAATATACCTCAGGT-----TAATATTTGATTGATGTA-TTTTTTTT-----------TTCCTATCC---CAG-TAGAGCTCCATGACAT----------------TG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2543071 338 -   2996164 GGCTTTTCAGTGGTCTAAATTCATAAATACTTT-AGAAGAAGACACTA-TTGGATAAAATGAAGGAAGAATTGTTGAGTCTAT-TGGAAGAGCTTTTCTTATTCAGAGATTCAGAGATGT--GAAAAAGGAAAATGTCCCAGTG-CAACTGGCAACTAGAGGAACAATAACGTTTGTCATGAAGTAAGTAATTTGGGA--T-TTACTTTGAAAAAAAT-TAAAGGCTCAGAT---AAGAAGAA-ACTAAGCACATTATCTGATATAGCACTGATAAAACTTCAAATATACCTCAGGT-----TAATATTTGATTGATATA--TTTTTTT-----------TTCCTATCC---CAG-TAGAGCTCCATGACAT----------------TG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     308716 339 +    766320 GGGTTTTCAGTGGTCTAAATTCATAAATACTTT-AGAAGAAGACACTA-TTGAATAAAATGAAGGAAGAATTGTTGAGTCTAT-TGGAAGAGCTTTTCTTATTCAGAGATTCAGAGGTGT--GAAAAAGGAAAATGTCCCAGTG-CAACTGGCAACTAGAGGAACAATAATGTTTGTCATGAAGTAAGTAAGTTGGGA--T-TTACTTTGAAAAAAAT-TAAAGGCTTAGAT---AAGAAGAA-AGTGAGCACATTATCTGATATAGCAGTGATAAAACCTCAAATATACCTCGGAT-----TAATATTTGATTGATGTA-TTTTTTTT-----------TTCCTATCC---CAG-TAGAGCTCCATGACAT----------------TG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28797155 339 -  71996105 GGGTTTTCAGTGGTCTAAATTCATAAATACTTT-AGAAGAAGACACTA-TTGGATAAAATGAAGGAACAATTGTTGAGTCTAT-TGGAAGAACTTTTCTTATTCAGAGATTCAGAGCTGT--GAAAAAGGAAAATGTCCCAGTG-CAACTGGCAACTAGAGGAACAATAATGTTTGTCATGAAGTAAGTAAGTTGGGA--T-TTACTTTG-AAAAAAT-TAAAGGCTTAGAT---AAGAAGAA-ACTAAGCACATTATCTGATATAGCAGTGATAAAACTTCAAATATACCTCAGGT-----TAATATTTGATTGATGTATTTTTTTTT-----------TTCCTATCC---CAG-TAGAGCTCCATGACAT----------------TG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     279194 338 -    352859 GGGTTTTCAGTGGTCTAAATTCATAAATACTTT-AGAAGAAGACACTA-TTGAATAAAATGAAGGAAGAATTGTTGAGTCTAT-TGGAACAGCTTTTCTTATTCAGAGATTCAGAGGTGT--GAAAAAGGAAAATGTCCCAGTG-CAACTGGCAACTAGAGGAACAATAATGTTTGTCATGAAGTAAGTAAGTTGGGA--T-TTACTTTGAAAAAAAT-TAAAGGCTTAGAT---AAGAAGAA-AGTGAGCACATTATCTGATATAGCAGTGATAAAACTTCAAATATACCTCAGAT-----TAATATTTGATTGATGTA--TTTTTTT-----------TTCCTATCC---CAG-TAGAGCTCCATGACAT----------------TG
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2083536 322 -   2232465 AGATTTCAATAAAAATGAAGCCATAAATACTTTAAGGATAGGTTAGTG-CTGG------TGAAAGAAG--------------------GGAACTTTTCTTATCAATGGATTCATGGATCT--GGAAAGTAAAAAAAGCATTATGTCAACTGGGGGATAAAATTGCAATAATATTTGTCATAAAAGAAGTAATTTTGGA--TCCCATTTTGAAAAGAATATAAAGACTCTGATTATAAGATGAA-ACTAAGACCATCACCAGATATAGTAG---TAACATTTTAGATATACCTTAAATTATGATAATATGTAACTAATGTG--GTTATGT-----------TTCCTACCC---CAA-CAGGGCACCACAGTGT----------------TT
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57649100 320 -  94987271 GGATTTATAG-AAACCAAAGGCATCGATACTTA----AAAAGACATTGTTTTAGTGAAACAAGGAAGGAAC--TTGAGCTCAC-AGAAAGTAGTTCTGTATTTAAGGATCTCAA--------GAAAAAGTAAA------------CAAGAG------ATATGTACAGCAATATTTTTCACTGAAGATGTCACCTGATT--T-CTTGTTTGAGAAAATG-TTCAAGCTCAAAATATAGTAAGAC-AATAAGCTAATCATCTATTACAGCA---ATGAGATTTTCAAAATACCTCAAAT-----TGACA----AAGAGTGTG--TGATTTTGAGCTCCCCGCTGCCTTTTCATTAAA-TAGGGTCCCTTGACTT----------------TA
i mm10.chr17               I 1 C 0
s dasNov3.JH569098           143335 341 -    254539 AGTTTTCAAGGGAGCCAAAGTCTTGTGTAACTC---AAGAAGCCTGTG-TTGTGTGATCTAAAAGAGGTACTCTTGAGTTCATGAAGAAAGGATCTTATTACCTAAGGATGCAGGTTTCTAGGAAAAGGAAAAGAGTCCCAGGG-AAACCAGAGAAGAGCAGTAAAATATCATTTGTCATTAAG-AAGTAATTTGGGGATC-CTGTTTAGAGATGACA-TTAAGGATCAGAT---TATAAGAAGACTAAATTTACCAGCTGA-AAAGCAGTGAAAACATTGCAAATGCATCTCAGAC-----TAATATCTGATTTATGTG--GGCTCAA-----------TTCTAACCC---TAGATCAGGCTTCATGAGGC----------------TT
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     413934 365 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409246 1099 -   3067355 I

a score=399110.000000
s hg38.chr6_GL000254v2_alt   661492 70 +   4827813 CCAGAGATGTGGGTTAGAAAGAGATCAGTAAGAGAACATCTCCAGCCTCATCTACGTTC--TAAGATGAGAA
s panTro5.chr6             29634934 70 + 175400573 CCAGAGATGTGGATTAGAAAGAGATCAGTAAGAGAACATCTCCAGCCTCATCTACGTTC--TAAGATGAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29873136 70 + 173848474 CCAGAGATGTGGATTAGAAAGAGATCAGTAAGAGAACATCTCCAGCCTCATCTACGTTC--TAAGATGAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5676048 70 +   6154872 CCAGAGATGTGGGTTAGAAAGAGATCAGTAAGAGAACATCTCCAGCCTCATCTACGTTC--TAAGATGAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29893952 70 + 172585720 CCAGAGATGTGGGTTAGAAAGAGATCAGTAAGAGAACATCTCTAGCCTCATCTACGTTC--TAAGATGAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29557609 70 - 170955103 CCAGAGATGTGGGTTAGAAAGAGATCAGTAAGAGAACATCTCTAGCCTCATCTACGTTC--TAAGATGAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2543409 70 -   2996164 CCAGAGATGTGGGTTAGGAAGAGATCAGTAAGAGAACATCTCTGGCCTCATCTACGTTC--TAAGATGAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     309055 69 +    766320 CCAGAGATG-GGGTTAGAAAGAGATCAGTAAGAGAACATCTCTGGCCTCATCTACATTC--TAAGATGAGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28797494 70 -  71996105 CCAGAGATGTGGGTTAGAAAGAGATCAGTAAGAGAACATCTCTGGCCTCATCTACGTTC--TAAGATGACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     279532 69 -    352859 CCAGAGATG-GGGTTAGAAAGAGATCAGTAAGAGAACATCTCTGGCCTCATCTACGTTC--TAAGATGAGAA
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     414299 70 +    730504 CCAGGGATATAGGTCAGAAATAGATCAGTAGGAGAACACCTCTAGCCCCATTTACACTC--TAAGATGAGAA
i proCoq1.NW_012152574v1   I 365 I 446
s otoGar3.GL873742          2083858 70 -   2232465 CTAGAAATGTGGATCAGGAAGCAATCAGTAAGAGAACA--TCTAGTCCCATTTATACTTTATAAAATAAGAG
i otoGar3.GL873742         C 0 I 4
s mm10.chr17               57649420 62 -  94987271 CTGGGCATGTGGGCCAGGAAGAGATTAATAAAGTAGTATTGTCAG---CATTAATAATC--AAAGAA-----
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           143676 69 -    254539 TCAGGGATAGGAGTCAG-AAGTGATCAGAAAGAGGTCACCTCTGAGGCTACTTACATTG--TAAGATGAAGA
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409246 1099 -   3067355 I

a score=1547584.000000
s hg38.chr6_GL000254v2_alt   661562 353 +   4827813 CAAAATAATTACTACTATTTTAAAGAGGTTTTTATATCTCTTTAAAGACTTTGTGATTATAATGAGTTCATTTTTATCTTCCTCTCTTAAGTCAAAAAATTTCAGGAGCCATTTTCCTGGGTCAAGAGATATCCAAGTGGTGGTGCAC-TTAAAAACTGCCCCCTATTAACGCTGACTTGGG-ATAGGAAAGGAAAGTTGTAACAGAATACGGATGTATTCTTCTCAACCAGAGAAGA-TGTAAGTTAGCAACATGTTCTAA-----ATCCCCAGAAGAAAGAAATACGTTAATGATAAACTT---AATTTTAAAAAGTGGTTAAGTCATAGTCCATAATATGCATGA-ATCCTTAATATTGAAG
s panTro5.chr6             29635004 353 + 175400573 CAAAATAATTACTACTATTTTAAAGAGGTTTTTATATCTCTTTAAAGAGTTTGTGATTATAATGAGTTCATTTTTATCTTCCTCTCTTAAGTCAAAAAATTTCAGGAGCCATTTTCCTGGGTCAAGAGATATCCAAGTGGTGGTGCAC-TTAAAAATTGCCCCCTATTAACGCTGACTTGGG-ATAGGAAAGGAAAGTTGTAACAGAATACGGATGTATTCTTCTCAACCAGAGAAGA-TGTAAGTTAGCAACATGTTCTAA-----ATCCCCAGAAGAAAGAAATACATTAATGATAAACTT---AATTTTAAAAAGTGGTTAAGTCATAGTCCGTAATATGCATGA-ATCCTTAATATTGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29873206 353 + 173848474 CAAAATAATTACTACTATTTTAAAGAGGTTTTTATATCTCTTTAAAGACTTTGTGATTATAATGAGTTCATTTTTATCTTCCTCTCTTAAGTCAAAAAATTTCAGGAGCCATTTTCCTGGGTCAAGAGATATCCAAGTGGTGGTGCAC-TTAAAAATTGCCCCCTATTAACGCTGACTTGGG-ATAGGAAAGGAAAGTTGTAACAGAATACGGATGTATTCTTCTCAACCAGAGAAGA-TGTAAGTTAGCAACATGTTCTAA-----ATCCCCAGAAGAAAGAAATACGTTAATGATAAACTT---AATTTTAAAAAGTGGTTAAGTCATAGTCCATAATATGCATGA-ATCCTTAATATTGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5676118 349 +   6154872 CAAAATAATTACTACTATTTTAAAGAGGTTTTTATATCTCTTTAAAGAC--TGTGATTATAATGAGTTCATTTTTATCTTCCTTTCTTAAGTCAAAAAATTTCAGGAGCCATGTTCCTGGGTCAAGAGATATCCAAGTGGTGGTGCAC-TTAAAAATTGCCCCCTATTAACGCTGACTTGGG-ATAGGAAAGGAAAGTTGTATCAGAATACGGATGTATTCTTCTCAACCAGAGAAGA-TGTAAGTTAG-AACATGTTCTAA-----ATCCCCAGAAGAAAGAAATACGTTAATGATAAA-TT---AATTTTAAAAAGTGGTTAAGTCATAGTCCATAATATGCATGA-ATCCTTAATATTGAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29894022 349 + 172585720 CAAAACAATTACTGCTATTTTAAAGAGGTTTTTATATCTCTTTAAAGACTTTGTGATTATAATGAGTTCATCTTTATCTTTCTCTCTTAAGTCAAAAAATTTCAGGTGCCATTTTCCTGGGTCAAGAGATAACCAACTGGTGGTGCAC-TTAAAAATTGCCCCCTATTAACACTGACTTGGG-ATAGGAAAGGAAAGTTGTGTTGGAATACAGATG-----TTCACAACCAGAGAAGATTGTAAGTTAGCAACATGTTCTAA-----ATCCCCAGAAGAAAGAAATATGTTAATAAGAAATTT---AATTTTAAAAAGTGGTTAAGTCATAGTCCATACTATGCATGA-ATCCTTAATATTGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29557679 349 - 170955103 CAAAACAATTACTGCTATTTTAAAGAGGTTTTTATATCTCTTTAAAGACTTTGTGATTATAATGAGTTCATCTTTATCTTTCTCTCTTAAGTCAAAAAATTTCAGGTGCCATTTTCCTGGGTCAAGAGATATCCAACTGGTGGTGCAC-TTAAAAATTGCCCCCTATTAACACTGACTTGGG-ATAGGAAAGGAAAGTTGTGTTGGAATACAGATG-----TTCACAACCAGAGAAGATTGTAAGTTAGCAACATGTTCTAA-----ATCCCCAGAAGAAAGAAATATGTTAATAAGAAATTT---AATTTTAAAAAGTGGTTAAGTCATAGTCCATACTATGCATGA-ATCCTTAATATTGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2543479 349 -   2996164 CAAAACAATTACTACTATTTTAAAGAGGTTTTTATATCTCTTTAAAGACTTTGTGATTATAATGAGTTCATCTTTATCTTTCTCTCTTAAGTCAAAAAATTTCAGGTTCCATTTTCCTGGGTCAAGAGATATCCCAGTGGTGGTGCAC-TTAAAAATTGCCCCCTATTAACGCTGACTTGGG-ATAGGAAAGGAAAGTTGTATCGGAATGCGGATG-----TTCACAACCAGAGAAGATTGTAAGTTAGCAACATATTCTAA-----ATCCCCAGAAGAAAGAAATATGTTAATGATAAACTT---AATTTTAACAACTGGTTATGTCATAGTCCATAATATGCATGA-ATCCTTAATATTGAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     309124 349 +    766320 CAAAACAATTACTACTATTTTAAAGAGGTTTTTATATCTCTTTAAAGACTTTGTGATTATAATGAGTTCATCTTTATCTTTCTCTCTTAAGTCAAAAAATTTCAGGTGCCATTTTCCTGGGTCAAGAGATATCCAAGTGGTGTTGCAC-TTAAAAATTGCCCCCTATTAACGCTGACTTGGG-ATAGGAAAGGAAAGTTGTGTTGGAATACAGATG-----TTCACAACCAGAGAAGATTGTAAGTTGGCAACATGTTCTAA-----ATCCCCAGAAGAAAGAAATATGTTAATGAGAAATTT---AATTTTAAAAAGTGGTTAAGTCATAGTCCATAATATGCATGA-ATCCTTAATATTGAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28797564 349 -  71996105 CAAAACAATTACTACTATTTTAAAGAGGTTTCTATATCTCTTTAAAGACTTTGTGATTATAATGAGTTCATCTTTATCTTTCTCTCTTAAGTCAAAAAATTTCAGGTGCCATTTTCCTGGGTCAAGAGATATCCAACTGGTGGTGCAC-TTAAAAATTGCCCCCTATTAACGCTGACTTGGG-ATAGGAAAGGAAAGTTGTGTTGGAATACAGATG-----TTCACAACCAGAGAAGATTGTAAGTTAGCAACATGTTCTAA-----ATCCCCAGAAGAAAGAAATATGTTAATAAGAAATTT---AATTTTAAAAAGTGGTTAAGTCATAGTCCATACTATGCATGA-ATCCTTAATATTGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     279601 349 -    352859 CAAAACAATTACTACTATTTTAAAGAGGTTTTTATATCTCTTTAAAGACTTTGTGATTATAATGAGTTCATCTTTATCTTTCTCTCTTAAGTCAAAAAATTTCAGGTGCCATTTTCCTGGGTCAAGAGATATCCAAGTGGTGTTGCAC-TTAAAAATTGCCCCCTATTAACGCTGACTTGGG-ATAGGAAAGGAAAATTGTGTTGGAATACAGATG-----TTCACAACCAGAGAAGATTGTAAGTTAGCAACATGTTCTAA-----ATCCCCAGAAGAAAGAAATATGTTAATGAGAAATTT---AATTTTAAAAAGTGGTTAAGTCATAGTCCATAATATGCATGA-ATCCTTAATATTGAAG
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2083932 328 -   2232465 AAATGCAATTACTATT-TTTTAAAAAGATTTTTA-------------------TGCTTATAATGAGTTCATTATTG-CTATTTTTCTTAAATTAAAATCCTATAGAGGATTTCTTACTAGATGAAGAGATATTGTCATGGTGGCATAT-TAAAAAGTTATACCCTATCAGAGCTGACTTGGGTATATTAAAGGAAACTTGTTTCAGAATGTGCATG-----TCTTTAGGCAGAGAAGATTGTGGACTGAAAATATGCTCTAA-----ATCCCTGGAAGAAATAAAAATATTAATGACAAACTT---AATTT--AAAAATAGTTGAATCAGAGTCCATAACAGACATAATATACTTAATATTTAAC
i otoGar3.GL873742         I 4 I 738
s mm10.chr17               57649482 318 -  94987271 -CACGTGACTACTGCTATTTCA---GGGCATTTCTACTTCTTCAGAGACTTTATGATGA-AATTATTTTATTCTTGACTATTACTCTCA-----------TTTGATGATTATACTCATCAGATAAAATAT---TGTATAACAGAATCT-TTAAAAAGCAACATACCACAAAGCTGATTTAGA---GATAAATGAAATTTTTATTCAAATGTAGATG-----TTCACAACCAGAGAACGTGATGTCTAGACAAAATGACACCA-----AACTCTTAGAGAAGGAAA-GTGTTAATGATGAATCT---AAATTTTAAACATAGTTAAATCA--------GATAT-CATGG-CTGTTCAAGATCTAAA
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           143745 319 -    254539 -AGGGTCAGTGCAACTCCTC--------TTTTTG---CTTGTTGCAGATGTCATGGTTCTAATTATTTCATTCCTGTCCACTGTTAGTAAGCTAAAATCCTTCTGGTGGCATCTTACTTGGCTTTTGGAAGTCCT-GTGGTGGAGTACATTGAAAAT--CACCCTGTTAGTCCCGACTTAGA-A----AGAGGAAAGTTGAATAAATATATAGATG-----TTCACAGCCAGAAAGGA------------AAGAAATTATAAGATTGAACTCTGAGAGAAGGGAA-ATATTAATGATTAATCTAGCAAAGAAAAAAAATGTCTGTGCAACAGT---TAATATGCAAGT-----TTAATATTCAAA
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     414369 446 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409246 1099 -   3067355 I

a score=283486.000000
s hg38.chr6_GL000254v2_alt   661915 74 +   4827813 AGACCAACAGCTAAGC----TTCTATACAACTTCTGAGGTTTGGAAGAAGT---ACAACAGTA----CTCTCCTTCCAAGTATCT
s panTro5.chr6             29635357 74 + 175400573 AGACCAACAGCTAAGC----TTCTATACAACTTCTGAGGTTTGGAAGAAGT---ACAACAGTA----CTCTCCTTCCAAGTATCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29873559 74 + 173848474 AGACCAACAGCTAAGC----TTCTATACAACTTCTGAGGTTTGGAAGAAGT---ACAACAGTA----CTCTCCTTCCAAGTATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5676467 74 +   6154872 AGACCAACAACTAAGC----TTCTATACAACTTCTGAGGTTTGGAAGAAGT---ACAACAGTA----CTCTCTTTCCAAGTATCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29894371 78 + 172585720 AGACCAACAGCTAAGCTAAGTTCTGTACAACTTCTGAGGTTTGAAACAAGT---ACAACAGTA----CTCTCCTTCCAAGTAGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29558028 78 - 170955103 AGACCAACAGCTAAGCTAAGTTCTGTACAACTTCTGAGGTTTGAAACAAGT---ACAACAGTA----CTCTCCTTCCAAGTAGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2543828 81 -   2996164 AGGCCAACAGCTAAGCTATGTTCTGTACAACTTCTGAGGTTTGGAACAAGTACAACAACAGTA----CTCTCCTTCCAAGTAGCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     309473 81 +    766320 AGACCAACAGCTAAGCTAAGTTCTGTACAACTTCTGAGGTTTGAAACAAGTACAACAACAGTA----CTCTCCTTCCAAGTAGCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28797913 81 -  71996105 AGACCAACAGCTAAGCTAAGTTCTGTACAACTTCTGAGGTTTGAAACAAGTACAACAACAGTA----CTCTCCTTCCAAGTAGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     279950 81 -    352859 AGACCAACAGCTAAGCTAAGTTCTGTACAACTTCTGAGGTTTGAAACAAGTACAACAACAGTA----CTCTCCTTCCAAGTAGCT
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2084998 65 -   2232465 AGTCTAACAGCCAAAC----TATTATAAAACTTCTGTAGTTGGGATTATGT---AAA-------------TATCTCAAAATATTT
i otoGar3.GL873742         I 738 C 0
s mm10.chr17               57649800 69 -  94987271 -------CAATCAAA-----TATTACACAGGATCTGAGGCT-GGATTACAC---AAAGCATTGATTTTTTTCTTCCTAGGcctcc
i mm10.chr17               C 0 I 86
s dasNov3.JH569098           144064 68 -    254539 AGTCTAATGGCCCATG----TTCAGCAAATCATTTTAGG-----AACCCGG---AAAACAAT-----CTCTCCCTCAAAACATTT
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     414369 446 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409246 1099 -   3067355 I

a score=301695.000000
s hg38.chr6_GL000254v2_alt   661989 52 +   4827813 TTGGCTTGGTGAGAAAATTCTGAGCCGGAAGGATT---CTGATTGCGATTAGTGT------
s panTro5.chr6             29635431 52 + 175400573 TTGGCTTGGTGAGAAAATTCTGAGCCGGAAGGATT---CTGATTGCGATTAGTGT------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29873633 52 + 173848474 TTGGCTTGGTGAGAAAATTCTGAGCTGGAAGGATT---CTGATTGCAATTAGTGT------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5676541 52 +   6154872 TTGGCTTGGTGAGAAAATTCTGAGCCGGAAGGATT---CTGATTGCAATTAGTGT------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29894449 52 + 172585720 TTGGCTTGGTGAGAAAGTTCTGAGCTGGAAGGATT---CTGATTGCAATTAGTGT------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29558106 52 - 170955103 TTGGCTTGGTGAGAAAGTTCTGAGCTGGAAGGATT---CTGATTGCAATTAGTGT------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2543909 52 -   2996164 TTGGCTTGGTGAGAAAATTCTGAGCTGGAAGGATT---CTGATTGTGATTGGTGT------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     309554 51 +    766320 TTGGCTTGGTGAGAAAATTCTGAGCTGGAAGGATT---CTGATT-CAATTAGTGT------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28797994 52 -  71996105 TTGGCTTGGTGAGAAAATTCTGAGCTGGAAGGATT---CTGATTGCGATTAGTGT------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     280031 51 -    352859 TTGGCTTGGTGAGAAAATTCTGAGCTGGAAGGATT---CTGATT-CAATTAGTGT------
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2410345 52 -   3067355 TTGGCTTGGTGAGAAAATTCTGAGCTGGAAGGATT---CTGATTGCGATTAGTGT------
i colAng1.NW_012115566v1   I 1099 C 0
s otoGar3.GL873742          2085063 52 -   2232465 TTGCCTTAGTGAGAAAATCCTGACGTGGAAGGACT---CTGATTCTAATTAAAGA------
i otoGar3.GL873742         C 0 I 6
s mm10.chr17               57649955 55 -  94987271 ctGTCTAAGCAAGAAAATTCTAGTCTGGATAGATTGGCCTCATTCCTGGTTGCAT------
i mm10.chr17               I 86 C 0
s dasNov3.JH569098           144132 57 -    254539 TTGTCTTGTAGAAAAGATCCTGTTCTGGAAAGATT---TT-ACCCTACATAGTGACTGTTT
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     414369 446 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=2473093.000000
s hg38.chr6_GL000254v2_alt   662041 302 +   4827813 TCCATAGATTATTTTGTCTTTTGTCTGAAGTGATGCTGAATACAACCTCAGTCACCGAATTTCTCCTCTTGGGAGTGACAGACATTCAAGAACTGCAGCCTTTTCTCTTCGTGGTTTTCCTCACCATCTACTTCATCAGTGTGACTGGGAATGGAGCCGTTCTGATGATTGTCATCTCCGATCCTAGACTCCATTCCCTTATGTATTTCTTCCTGGGAAACCTGTCCTACCTGGATATCTGTTACTCTACGGTGACACTGCCAAAAATGCTGCAGAACTTTCTCTCTACACACAAAGCAATT
s panTro5.chr6             29635483 301 + 175400573 TCCATAGATTATTTTGTCTTTTGTCTGAAGTGATGCTGAATACAACCTCAGTCACCGAATTTCTCCTCTTGGGAGTGACAGACATTCAAGAACTGCAGCCTTTTCTCTTCGTGGTTTTCCTCACCATCTACTTCATCAGTGTGACTGGGAATGGAGCCGTTCTGATGATTGTCATCTCCGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAACCTGTCCTACCTGGATATCTGTTACTCTACGGTGACACTGCCAAAA-TGCTGCAGAACTTTCTCTCTACACACAAAGCAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29873685 302 + 173848474 TCCATAGATTATTTTGTCTTTTGTCTGAAGTGATGCTGAATACAACCTCAGTCACCGAATTTCTCCTCTTGGGAGTGACAGACATTCAAGAACTGCAGCCTTTTCTCTTCGTGGTTTTCCTCACCATCTACTTCATCAGTGTGACTGGGAATGGAGCCGTTCTGATGATTGTCATCTCCGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAACCTGTCCTACCTGGATATCTGTTACTCTACGGTGACACTGCCAAAAATGCTGCAGAGCTTTCTCTCTACACACAAAGCAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5676593 302 +   6154872 TCCATAGATTATTTTGTCTTTTGTCTGAAGTGATGCTGAATACAACCTCAGTCACCGAATTTCTCCTCTTCGGAGTGACAGACATTCAAGAACTGCAGCCTTTTCTCTTCGTGGTTTTCCTCACCATCTACTTCATCAGTGTGACTGGGAATGGAGCCGTTCTGATGATTGCCATCTCCGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAACCTGTCCTACCTGGATATCTGTTACTCTACGGTGACACTGCCAAAAATGCTGCAGAACTTTCTGTCTACACACAAAGCAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29894501 302 + 172585720 TCCATACATTATTTTGTCTTTTTTCTGAAGTGATGCTGAATACAACCTCAGTCACCGAATTTCTCCTCTTGGGAGTGACAGACATTCAAGAACTGCAGCCTTTTCTCTTCGTGGTTTTCCTCACCATCTACTTCATCAGTGCGGCTGGGAATGGAGTCATTCTGATGATTGTCATCTCTGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAACCTGTCATGCCTGGATATCTGCTACTCTACGGTGACACTGCCAAAGATGCTGCAGAACTTCCTCTCTACACACAAAGCAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29558158 302 - 170955103 TCCATACATTATTTTGTCTTTTTTCTGAAGTGATGCTGAATACAACCTCAGTCACCGAATTTCTCCTCTTGGGAGTGACAGACATTCAAGAACTGCAACCTTTTCTCTTCGTGGTTTTCCTCACCATCTACTTCATCAGTGCGGCTGGGAATGGAGTCATTCTGATGATTGTCATCTCTGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAACCTGTCCTGCCTGGATATCTGCTACTCTACGGTGACACTGCCAAAGATGCTGCAGAACTTCCTCTCTACACACAAAGCAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2543961 302 -   2996164 TCCATACATTATTTTGTGTTTTTTTTGAAGTGATGCTGAATACAACCTCAGTCACCGAATTTCTCCTCTTGGGAGTGACAGACATTCAAGAACTGCAGCCTTTTCTCTTCGTGGTTTTCCTCACCATCTACTTCATCAGTGTGGCTGGGAATGGAGTCATTCTGATGATTGTCATCTCTGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAACCTGTCCTGCCTGGATATCTGCTACTCTACGGTGACACTGCCAAAGATGCTGCAGAACTTCCTCTCTACACACAAAGCAATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     309605 302 +    766320 TCCATACATTATTTTGTCTTTTTTCTGAAGTGATGCTGAATACAACCTCAGTCACCGAATTTCTCCTCTTGGGAGTGACAGACATTCAAGAACTGCAACCTTTTCTCTTCGTGGTTTTCCTCACCATCTACTTCATCAGTGTGGCTGGGAATGGAGCCATTCTGATGATTGTCATCTCTGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAACCTGTCCTGCCTGGATATCTGCTACTCTACGGTGACACTGCCAAAGATGCTGCAGAACTTCCTCTCTACACACAAAGCAATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28798046 302 -  71996105 TCCATACATTATTTTGTGTTTTTTTTGAAGTGATGCTGAATACAACCTCAGCCACCGAATTTCTCCTCTTGGGAGTGACAGACATACAAGAACTGCAGCCTTTTTTCTTCGTGGTTTTCCTCACCATCTACTTCATCAGCATGGCTGGGAATGGAGCCATTCTAATGATTGTCATCTCTGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAACCTGTCCTGCCTGGATATCTGCTACTCTATGGTGACACTGCCAAAGATGCTGCAGAACTTCCTCTCTACATACAAAGCAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     280082 302 -    352859 TCCATACATTATTTTGTCTTTTTTCTGAAGTGATGCTGAATACAACCTCAGTCACCGAATTTCTCCTCTTGGGAGTGACAGACATTCAAGAACTGCAACCTTTTCTCTTCGTGGTTTTCCTCACCATCTACTTCATCAGTGTGGCTGGGAATGGAGTCATTCTGATGATTGTCATCTCTGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAACCTGTCCTGCCTGGATATCTGCTACTCTACGGTGACACTGCCAAAGATGCTGCAGAACTTCCTCTCTACACACAAAGCAATT
i manLeu1.NW_012099655v1   C 0 I 27745
s colAng1.NW_012115566v1    2410397 302 -   3067355 TCCATACATTATTTTGTGTTTTTTTTGAAGTGATGCTGAACACAACCTCAGTCACCAAATTTCTCCTCTTGGGAGTGACAGACATTCAAGAACTGCAGCCTTTTTTCTTCATGGTTTTCCTCACCATCTACTTCATCAGTGTGGCTGGGAATGGAGCCATTCTAATGATTGTCATCTCTGATCCTAGACTCCATTCCCCTATGTATTTTTTCCTGGGAAACCTGTCCTGCCTGGATATCTGCTACTCTGCGGTGACACTGCCAAAGATGCTGCAGAACTTCCTCTCTACACACAAAGCAATT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     414815 302 +    730504 TCCATACATCATTGTGTCTTTTCTTTGAAGTGATGCTGAATCAAACTTCGGTCACTGAATTTCTCCTCCTAGAAGTGACAGACATCAAAGAACTTCAGCTTTTTCTCTTTGTGGTTTTCCTCACCATTTACTTCCTCAACATGGCTGGGAATGGAGCCATCCTGATGATTGTTTTCTCTGACCCAAGACTCCATTCACCCATGTATTTCTTCCTGGGAAACCTGTCGTGTATAGATATCTGCTACTCCACGGTGACACTGCCAAAGATGCTGGAGAACTTCCTCTCTACAAATAAAGCAATT
i proCoq1.NW_012152574v1   I 446 C 0
s otoGar3.GL873742          2085121 302 -   2232465 TATATATATTATTTTGTCTCTTCTTTGAAGTGAGGCTGAATCAAACTTTAGTCACTGAGTTTCTCCTCCTGGGAATGACAGACATCCAAGAACTGCAGCCTTTTCTCTTTGGGGTTTTCCTCACCATCTACTTCCTCAACGTGTCAGGCAATGGAGCCATCCTGATGATTGTCATCTCTGACCCAAGACTGCATTCACCCATGTATTTCTTCCTGGGAAACCTGTCATGTCTAGATATCTTCTACTCCACGGTGACACTGCCAAAGATGCTGAAAAACTTCCTTTCTACACATAAAACAATT
i otoGar3.GL873742         I 6 C 0
s mm10.chr17               57650010 301 -  94987271 TCGACAAACTATGCTGTGTTTCTTTT-AGGTGATGTTGAATCAAACCTCTGTCACAGAATTTATCCTTTTGGGAGTGAGAGACATACAAGAACCACAGCCCTTTCTCTTTGCTATTTTCTTCACCATCTACTTTGTCAATATAACTGGGAATGGAGCCATCCTGATGATTGTCATCTTAGACCCAAGACTCCACTCACCTATGTATTTCTTCCTGGGAAACCTAGCATGTCTAGATATCTCCTACTCCACTGTAACAGTGCCAAAAATGCTGGAGAACCTTCTCTCTACAAACAAAGCAATT
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           144189 294 -    254539 CCCACATGTTACTTTGCTTTTTTCCT--AGTGATGCTGAATAAAACCTCACTCACTGAATTTTTCCTTCTGGGACTGACGGACATCCAGGAGCTGCAGCCTCTGCTCTTTGT-GTTTTCTGCACAATCTACAT--GCAGTGTGGCTGG--ATGGGG-CAATCTGATGATCGTCATCTCTAACCCAAAACTCCACTCTCCTATGTACTTCTTCCTGGGAAATCTCTCATGCCTAGACATCTGTTACTCCACAGTGACGCTGCCAAAGATGCTGGAGAACTTAGTCTCTTCACACAAAGCAATT
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I

a score=2571344.000000
s hg38.chr6_GL000254v2_alt   662343 298 +   4827813 TCTTTCTTGGGATGCATAAGCCAGCTTCATTTCTTCCACTTCCTGGGCAGCACGGAGTCCATGTTGTTCGCCGTGATGGCATTTGACCTCTCTGTGGCTATCTGCAAGCCACTTCGCTACACTGTCATCATGAACCCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGGTCATTGGTTTTTTCCATGCCCTGCTGCACTCCGTAATGACTTCTCGCTTGAACTTCTGTGGTTCCAACCGTATCCATCATTTTCTCTGTGATATTAAGCCATTGCTAAAGCTGGCCTGTGGGAACA
s panTro5.chr6             29635784 298 + 175400573 TCTTTCTTGGGATGCATAAGCCAGCTTCATTTCTTCCACTTCCTGGGCAGCACGAAGTCCATGTTGTTGGCCGTGATGGCATTTGACAGCTCTGTGGCTATCTGCAAGCCACTTCGCTACACTGTCATCATGAACCCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGGTCATTGGTTTTTTCCATGCCCTGCTGCACTCCATAATGACTTCTCGCTTGAACTTCTGTGGTTCCAACCGTATCCATCATTTTCTCTGTGATATTAAGCCATTGCTAAAGCTGGCCTGTGGGAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29873987 298 + 173848474 TCTTTCTTGGGATGCATAAGCCAGCTTCATTTCTTCCACTTCCTGGGCAGCACGGAGTCCATGTTGTTGGCCGTGATGGCATTTGACCGCTCTGTGGCTATCTGCAAGCCACTTCGCTACACTGTCATCATGAACCCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGGTCACTGGTTTTTTCCATGCCCTGCTGCACTCCGTAATGACTTCTCGCTTGAACTTCTGTGGTTCCAACCGTATCCATCATTTTCTCTGTGATATTAAGCCATTGCTAAAGCTGGCCTGTGGGAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5676895 297 +   6154872 TCTTTCTTGGGATGCATAAGCCAGCTTCATTTCTTCCACTTCCTGGGCAGCACGGAGGCCATGTTGTTGGTCGTGATGGCATTTGACCGCTCTGTGGCTATCTGCAAGCCACTT-GCTACACTGTCATCATGAACCCTCAGCTCTGTACCCAGATGGCCATCACAGTCTGGATCATTGGTTTTTTCCATGCCCTGCTGCACTCCGTGATGACTTCTCGCTTGAACTTCTGTGGTTCCAACCATATCCATCATTTTCTCTGTGATATTAAGCCATTGCTAAAGCTGGCCTGTGGGAACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29894803 298 + 172585720 TCTTTCTTGGGATGCATAAGCCAGCTCCATTTCTTCCACTTCCTGGGCAGCACAGAGGCCATGCTGTTGGCCGTGATGGCATTTGACCGCCTTGTGGCTATCTGCAAGCCACTTCGCTACACTGTCACCATGAACCCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGACCATTGGTTTCTTCCATGCCCTGCTGCACTCCGTAATGACTTCTCGCTTGAACTTCTGTGGTTCCAACTGTATCCATCACTTCTTCTGTGATGTGAAGCCATTGCTAAAGCTGGCCTGTGGGAACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29558460 298 - 170955103 TCTTTCTTGGGATGCATAAGCCAGCTCCATTTCTTCCACTTCCTGGGCAGCACAGAGGCCATGCTGTTGGCCGTGATGGCATTTGACCGCCTTGTGGCTATCTGCAAGCCACTTCGCTACACTGTCATCATGAACCCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGACCATTGGTTTCTTCCATGCCCTGCTGCACTCCGTAATGACTTCTCGCTTGAACTTCTGTGGTTCCAACTGTATCCATCACTTCTTCTGTGATGTGAAGCCATTGCTAAAGCTGGCCTGTGGGAACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2544263 298 -   2996164 TCTTTCTTGGGATGCATAAGCCAGCTCCATTTCTTCCACTTCCTGGGCAGCACAGAGGCCATGCTGTTGGCCGTGATGGCATTTGACCGCCTTGTGGCTATCTGCAAGCCACTTCACTACACTGTCATCATGAACCCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGACCATTGGTTTCTTCCATGCCCTGCTGCACTCCGTAATGACTTCTCGCTTGAACTTCTGTGGTTCCAACTGTATCCATCACTTCTTCTGTGATGTGAAGCCATTGCTAAAGCTGGCCTGTGGGAACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     309907 298 +    766320 TCTTTCTTGGGATGCATAAGCCAGCTCCATTTCTTCCACTTCCTGGGCAGCACAGAGGCCATGCTGTTGGCCGTGATGGCATTTGACCGCTTTGTGGCTATCTGCAAGCCACTTCGCTACACTGTCATCATGAGCCCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGACCATTGGTTTCTTCCATGCCCTGCTGCACTCCGTAATGACTTCTCGCTTGAACTTCTGTGGTTCCAACTGTATCCATCACTTCTTCTGTGATGTGAAGCCGTTGCTAAAGCTGGCCTGTGGGAACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28798348 298 -  71996105 TCTTTCTTGGGATGCATAAGCCAGCTCCATTTCTTCCACTTCCTGGGCAGCACAGAGGCCATGCTATTGGCCGTGATGGCATTTGACCGCTTTGTGGCTATCTGCAAGCCACTTCACTACACTGTCATCATGAACCCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGACCATTGGTTTCTTCCATGCCCTGCTGCACTCCGTAATGACTTCTCGCTTGAACTTCTGTGGTTCCAACTGTATCCATCACTTCTTCTGTGATGTGAAGCCATTGCTAAAGCTGGCCTGTGGGAACA
i chlSab2.chr17            C 0 T 680
s manLeu1.NW_012099655v1     308129 298 -    352859 TCTTTCTTGGGATGCATAAGCCAGCTCCATTTCTTCCACTTCCTGGGCAGCACAGAGGCCATGCTGTTGGCCATGATGGCATTTGACCGCTTTGTGGCTATCTGCAAGCCACTTCGCTACACTGTCATCATGAACTCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGACCATTGGTTTCTTCCATGCCCTGCTGCACTCCGTAATGACTTCTCGCTTGAACTTCTGTGGTTCCAACTGTATCCATCACTTCTTCTGTGATGTGAAGCCGTTGCTAAAGCTGGCCTGTGGGAACA
i manLeu1.NW_012099655v1   I 27745 C 0
s colAng1.NW_012115566v1    2410699 298 -   3067355 TCTTTCTTAGGATGCATAAGCCAGCTCCATTTCTTCCACTTCCTGGGCGGCACAGAGGCCATGCTGTTGGCTGTGATGGCATTTGACCGCTTTGTGGCTATCTGCAAGCCACTGCACTACACTGTCATCATGAACCCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGACCATTGGTTTCTTCCATGCCCTGCTGCACTCCGTAATGACTTCTCGCTTGAACTTCTGTGGTTCCAACTGTATCCATCACTTCTTCTGTGATGTGAAGCCGTTGCTAAAGCTGGCCTGTGGGAACG
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     415117 298 +    730504 TCCTTCTTGGGATGCATAAGCCAGCTTCATTTCTTCCACTTCCTGGGCAGCACAGAAGCCATGTTGTTGGCCGTGATGGCATTTGATCGCTTTGCGGCTATCTGCAAACCACTTCATTACACTGTCATCATGAGGCCTCAGCTGTGTACCCAGGTGGCTATCACAATTTGGACCATTGGTTTTTTTCATGCCCTGCTGCACTCTGTAATGACCTCTCACTTGAACTTCTGTGGTTCCAACCATATCCATCACTTCTTCTGTGATGTTAAACCATTGCTAAAGCTTGCCTGTGGAAACA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2085423 298 -   2232465 TCCTTTTCGGGATGCATCAGCCAACTTCATTTCTTCCATTTTTTGGGCAGCACCGAGGCCATGCTATTGGCTGTGATGGCATTTGATCGTTTTATGGCTATATGCAAACCACTTCATTATACTGCCGTCATGAGGCCTCAGTTCTGTACGCAGATGGCTACCACAATCTGGATCATTGGTTTTTTCCATGCCCTGCTACACTCCATAATGACCTCTCGCTTGAACTTCTGTGGTTCCAACCATATCCATCATTTCTTCTGTGATGTTAAACCATTGCTGGAGCTTGCCTGTGGAAACA
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57650311 298 -  94987271 TCCCTCTTGGGATGCATAACTCAGCTTCATTTCTTCCACTTCCTGGGTACCACAGAATCCCTGCTGCTAGCAGTGATGGCATTTGACCGCTTTGTGGCTATCTGCAGACCACTTCACTATTCTGTCATCATGAATTGGCAGGTCTGTATCCTTATGGCTGTGACCATCTGGACCATTGCTTTTCTCCATGCCTTGCTTCATTCTGTAATGACATCTCGTTTGAGCTTCTGTGGTCTCAATCATATTCATCATTTCTTCTGTGATGTTAAGCCATTACTGGAGCTGGCCTGTGGAAACA
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           144483 298 -    254539 TCCTTCTGGGGATGCATCAGCCAGCTGCATTTCTTTGACTTCCTGGGCAGTACAGAGGCCTTGCTGTTGGGTGTGATGGCCTTGGACCGCTTTGTGGCTATCTGCAAACCACTTCATTACACTGTCATCATGAATCATCAGCTCTGCATCCAGATGGCCAGCACAGTCTGGGTTATCGGTTTCTTCCATGCCCTGCTGCACTCCATAATGACCTCTCACTTGAACTTCTGTGGTTCCAACCATATCCATCACTTCTTCTGTGATGTTAAGGCATTGTTGGAACTGGCCTGTGGGAACA
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I

a score=2367875.000000
s hg38.chr6_GL000254v2_alt   662641 331 +   4827813 CTGAGCTTAATCAGTGGCTACTCAGTACTGTCACGGGGACAATTGCCATGGGCCCCTTCTTTCTGACACTTCTCTCCTATTTCTACATTATCACTTATCTCTTCTTCAAGACCCGTTCTTGTAGCATGCTCTGTAAAGCACTGTCCACTTGTGCCTCCCACTTCATGGTAGTTATTCTTTTCTATGCACCTGTTCTTTTCACCTATATCCATCCTGCGTTAGAGAGCTTCATGGACCAGGACCGGATTGTTGCCATCATGTACACTGTGGTCACTCCTGTACTAAACCCACTGATCTATACTTTGAGGAACAAGGAAGTGAAGGGGGCCTT
s panTro5.chr6             29636082 331 + 175400573 CTGAGCTTAATCAGTGGCTACTCAGTACTGTCACGGGGACAATTGCCATGGGCCCCTTCTTTCTGACACTTCTCTCCTATTTCTACATTATCACTTATCTCTTCTTCAAGACCCGTTCTTGTAGCATGCTCTGTAAAGCACTGTCCACTTGTGCCTCCCACTTCATGGTAGTTATTCTTTTCTATGCACCTGTTCTCTTCACCTATATCCATCCTGCGTTAGAGAGCTTCATGGACCAGGACCGGATTGTTGCCATCATGTACACTGTGGTCACTCCTGTACTAAACCCACTGATCTATACTTTGAGGAACAAGGAAGTGAAGGGGGCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29874285 331 + 173848474 CTGAGCTTAATCAGTGGCTACTCAGTACTGTCACGGGGACAATTGCCATGGGCCCCTTCTTTCTGACACTTCTCTCCTATTTCTACATTATCACTTATCTCTTCTTCAAGACCCGTTCTTGTAGCATGCTCTGTAAAGCACTGTCCACTTGTGCCTCCCACTTCATGGTAGTTATTGTTTTCTGTGCACCTGTTCTCTTCACCTGTATCCATCCTGCGTTAGAGAGCTTCATGGACCAGGATGGGATTGTTGCCGTCATGTACACTGTGGTCACTCCTGTACTAAACCCACTGATCTATACTTTGAGGAACAAGGAAGTGAAGGGGGCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5677192 331 +   6154872 CTGAGCTTAATCAGTGGCTTCTCAGTACTGTCACGGGGACAATTGCCATGGGCCCCTTCTTTCTGACACTTCTCTCCTATTTCTACATTATCACTTATCTCTTCTTCAAGACCCGTTCTTGTAGCATGCTCTGTAAAGCACTGTCCACTTGTGCCTCCCACTTCATGGTAGTTATTCTTTTCTATGCACCTGTTCTCTTCACCTATATCCATCCTGCGTTAGAGAGCTTCATGGACCAGGACCGGATTGTTGCCATCACGTACACTGTGGTCACTCCTGTACTAAACCCACTGATCTATACTTTGAGGAACAAGGAAGTGAAGGGGGCCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29895101 331 + 172585720 CGGAGCTCAATCAGTGGTTGCTCAGTACTGTCACAGGGACAATTGCCATGGGCCCCTTCTTTCTGACACTTCTCTCCTATTTCTACATTATCACCTATCTCTCCTTCAAGACCCATTCTTGTAGCATGCTCCACAAAGCACTGTCCACGTGTGCCTCCCACTTCATGGTAGTTATTCTTTTGTATGCACCTGTTCTCTTCACCTACATTCATCCTGCCTCAGGGACCTCCATGGACCAGGACCGGATCATTGCCATCATGTCCACTGTGGTCACTCCAGTACTAAACCCACTGATCTACACTTTGAGGAACAAGGAAGTGAAGGGGGCCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29558758 331 - 170955103 CGGAGCTCAATCAGTGGTTGCTCAGTACTGTCACAGGGACAATTGCCATGGGCCCCTTCTTTCTGACACTTCTCTCCTATTTCTACATTATCACCTATCTCTCCTTCAAGACCCATTCTTGTAGCATGCTCCACAAAGCACTGTCCACGTGTGCCTCCCACTTCATGGTAGTTATTCTTTTGTATGCACCTGTTCTCTTCACCTACATTCATCCTGCCTCAGGGACCTCCATGGACCAGGACCGGATCATTGCCATCATGTACACTGTGGTCACTCCAGTACTAAACCCACTGATCTACACTTTGAGGAACAAGGAAGTGAAGGGGGCCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2544561 331 -   2996164 CGGAGCTCAATCAGTGGTTGCTCAGTACTGTCACAGGGACAATTGCCATGGGCCCCTTCTTTCTGACACTTCTCTCCTATTTCTACATTATCACCTATCTCTCCTTCAAGACCCATTCTTGTAGCATGCTCCACAAAGCACTGTCCACGTGTGCCTCCCACTTCATGGTAGTTATTCTTTTGTATGCACCTGTTCTCTTCACCTACATTCATCCTGCCTCAGGGACCTCCATGGACCAGGACCGGATCATTGCCATCATGTACACTGTGGTCACTCCAGTACTAAACCCACTGATCTACACTTTGAGGAACAAGGAAGTGAAGGGGGCCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     310205 331 +    766320 CGGAGCTCAATCAGTGGCTGCTCAGTACTGTCACAGGGACAATTGCCATGGGCCCCTTCTTTCTGACACTTCTCTCCTATTTCTACATTATCACCTACCTCTCCTTCAAGACCCATTCTTGTAGCATACTCCACAAAGCGCTGTCCACTTGTGCCTCCCACTTCATGGTAGTTATTCTTTTGTATGCACCTGTTCTCTTCACCTATATTCATCCTGCCTCAGGGACCTCCATGGACCAGGACCGGATCATTGCCATCATGTACACCGTGGTCACACCAGTACTAAACCCACTGATCTACACTTTGAGGAACAAGGAAGTGAAGGGGGCCTT
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     308427 331 -    352859 CTGAGCTCAATCAGTGGCTGCTCAGTACCGTCACAGGGACAATCGCAATGGGCTCTTTCTTTCTCACATTTCTCTCTTATTTCTACATTATCACCCATCTCTTCTTCAAGACTCATTCTTTTAGCATGCTCCACAAACCACTGTCCACTTGTGCCTCCCACTTCATGGTAGTTATTCTTTTGTATGCACCTGTTCTCTTCACCTATATTCATCCTGCCTCAGGGACCTCCATGGACCAGGACCGGATCATTGCCATCATGTACACTGTGGTCACTCCAGTACTAAACCCACTGATCTACACTTTGAGGAACAAGGAAGTGAAGGGGGCCTT
i manLeu1.NW_012099655v1   C 0 T 22059
s colAng1.NW_012115566v1    2410997 331 -   3067355 CTGAGCTCAATCAGTGGCTGCTCAGTACTGTCACAGGGACAATTGCAATGGGCTCTTTCTTTCTCACATTTCTCTCTTATTTCTACATTATCACCCATCTCTTCTTCAAGACTCATTCTTTTGGCATGCTCCACAAAGCACTGTCCACTTGTGCCTCCCACTTCATGGTAGTTATTCTTTTCTATGCAACTGTTCTCTTCACCTATATACATCCTGCCTCGGGGACCTCCATGGACCAGGACCGGATCATTGCCATCGTGTACACTGTGATCACTCCTGTACTAAACCCACTGATCTACACTTTGAGGAACAAGGAAGTGAAGGGGGCCTT
i colAng1.NW_012115566v1   C 0 T 3505
s proCoq1.NW_012152574v1     415415 331 +    730504 CTAAGCTCAATCAGTGGCTGCTCAATACTGTCACAGGGACCATTGCCATGAGTTCCTTCTTTCTGACACTTCTCTCCTATTTCTACATTATCACCTATCTCTTCTTCAAAACCCACTCTTGCAGCATGCTTCACAAAGCACTGTCCACTTGCGCCTCCCACTTCACGGTAGTTATTCTTTTCTATGCCCCTGTTCTCTTCATCTACATTCATCCTGACTCAGAGAGCTCCATGGACCAGGACTGGATCATTGCCATCATGTACAGTGTGGTCACTCCTGCACTAAATCCACTGATCTATACTTTGAGGAACAAGGAAGTGAAGGGGGGCTT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2085721 331 -   2232465 CAGAGCTCAATCAGTGGCTGCTCAATACTGTCACAGGGACCATTGCCATTAGTTCCTTCTTTCTGACACTTCTCTCCTATTTCTACATCATCACCTATCTCTTCTTCAAAACCCACTCTTGCAGTATGCTTCACAAAGCATTGTCCACTTGTGCCTCCCACTTCATGGTAGTTATGCTTTTCTATGCACCTGTTCTCTTCATCTATATTTTCCCTGCCTCAGGGAGCTCAATGGACAAGGATTGGATCATTGCCATCATGTACAGTGTGGTCACTCCTGTGCTTAACCCACTGATCTATACTTTGAGGAACAAGGAAGTGAAGGGGGCTTT
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57650609 331 -  94987271 CTGAGCTCAACCTTTGGCTGCTTAATACCGTTACAGGTACCATTGCCTCAGTCCCCTTTTTTCTGACATTTCTCTCTTATTTCTACATCATCACCTATCTTTTCCTCAAGACCCGTTCTTGCAGCATGCTCCACAAAGCACTGTCTACTTGTGCCTCTCACTTCATGGTTGTTGTTCTGTTCTATGCTCCTGTTCTCTTCACCTATATCCGTCCCACCTCAGGCAGCTCTTTAGACCAGGACAGAATCATTGCCATCATGTACAGTGTGGTCACCCCTGCTCTCAATCCACTAATCTACACCTTGAGAAACAAGGAAGTGAGGAGTGCATT
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           144781 331 -    254539 TTGACCTCAACCAGTGGTTGATTAATATTGTCACAGGCACCATTGGCATGGGCCCCTTCTTTCTGACACTTCTCTCCTATTTCTATATTCTTGCCTACCTTTTCTTCAAGACTTATTCTTGCAGAATGCTTCAGAAACCTCTGTCCACCTGTGCCTCCCACTTCATGGTCGTTATTCTTTTTTATGTTCCTGTTCTCTTCACCTACACTCGTCCTGCTTCAGGCAGCTCCATGGAACAGGATGCAGTCATTGCCCTCATGTACAGTGTGGTGACTCCTGTACTAAATCCACTGATCTATACCTTGAGGAACAAGGAGGTGAAGCAAGCCAT
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e chlSab2.chr17            28798646 680 -  71996105 T

a score=100267.000000
s hg38.chr6_GL000254v2_alt   662972 18 +   4827813 GGGTAGAGTGATCAGAAG
s panTro5.chr6             29636413 18 + 175400573 GGGTAGAGTGATCAGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29874616 18 + 173848474 GGGTAGAGTGATCAGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5677523 18 +   6154872 GGGTAGAGTGATCAGAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29895432 18 + 172585720 GGTTAGAGTGATCAGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29559089 18 - 170955103 GGTTAGAGTGATCAGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2544892 18 -   2996164 GGTTAGAGTGATCAGAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     310536 18 +    766320 GGGTAGAGTGATCAGAAG
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     286699 18 -    352859 GGGTAGAGTGATCAGAAG
i manLeu1.NW_012099655v1   T 22059 C 0
s proCoq1.NW_012152574v1     415746 18 +    730504 GTGTAGGGTGATCAGAAG
i proCoq1.NW_012152574v1   C 0 I 392
s otoGar3.GL873742          2086052 18 -   2232465 GGGTAGGGTGATCAGAAC
i otoGar3.GL873742         C 0 I 3
s mm10.chr17               57650940 18 -  94987271 GAATAGGAAGGTGAGAAG
i mm10.chr17               C 0 I 3
s dasNov3.JH569098           145112 18 -    254539 GAGTAGGGCAATCACAAG
i dasNov3.JH569098         C 0 I 3
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e chlSab2.chr17            28798646 680 -  71996105 T

a score=1487105.000000
s hg38.chr6_GL000254v2_alt   662990 396 +   4827813 GCTTTGATTTGAATAAA-CCAGAGAACTCTACTGAGGCATAAATAACCA-GCAATGAAAAAGTAGAGATGTGTAATTTTACTGCTTCTCAGAT-------GGTT---------------------TATAAGTGTA-----------------------------AAATAGAGGCAACTGG-ATAAAAGAAAAA---------AAAGTCCAATCT-AGTTGTAGTAAACAATACATTTCTAAGTAA--TATGAGGAATACTTGAAAATGCAAGACACTAGCCATGGAACCCTAATGCTGAAAATTTTTTGGAA-TATCAGTTGATGTAATTGACTTATTATGTATTCTAACATGTACTTGTATGCAATTGCATGTAGAATTTTGCCTATATTGCCCATGTATTGTATAGATAGATGATATTTAGGACTGTTTGT------CTGTGAGATCCTTTTAGTTTAACACATTTTAGTCTG
s panTro5.chr6             29636431 396 + 175400573 GCTTTGATTTGAATAAA-CCAGAGAACTCTTCTGAGGCATAAATAACCA-GCAATGAAAAAGTAGAGATGTGTAATTTTACTGCTTCTCAGAT-------GGTT---------------------TATAAGTGTA-----------------------------AAATAGAGGCAACTGG-ATAAAAGAAAAA---------AAAGTCCAATCT-AGTTGTAGTAAACAATACATTTCTAAGTAA--TATGAGGAATACTTGAAAATGCAAGGCACTAGCCATGGAACCCTAATGCTGAAAATTTTTTGGAA-TATCAGTTGATATAATTGACTTATTATGTATTCTAACATGTACTTGTATGCAATTGCATGTAGAATTTTGCCTATATTGCCCATGTATTGTATAGATAGATGATATTTAGGACTGTTTGT------CTGTAAGATCCTTTTAGTTTAACACATTTTAGTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29874634 395 + 173848474 GCTTTGATTTGAATAAA-CCAGAGAACTCTTCTGAGGCATAAATAACCA-GCAATGAAAAAGTAGAGATGTGTAATTTTACTGCTTCTCAGAT-------GGTT---------------------TATAAGTGTA-----------------------------AAATAGAGGCAACTGG-ATAAAAG-AAAA---------AAAGTCCAATCT-AGTTGTAGTAAACAATACATTTCTAAGTAA--TATGAGGAATACTTGAAAATGCAAGACACTAGCCATGGAACCCTAATGCTGAAAATTTTTTGGAA-TATCAGTTGATATAATTGACTTATTATGTATTCTAACATGTACTTGTATGCAATTGCATGTAGAATTTTGCCTATATTGCCCATGTATTGTATAGATAGATGATATTTAGGACTGTTTGT------CTGTAAGATCCTTTTAGTTTAACACATTTTAGTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5677541 396 +   6154872 GCTTTGATTTGAATAAA-CCAGAGAACTCTTCTGAGGCATAAATAACCA-GCAATGAAAAAGTAGAGATGTGTAATTTTACTGCTTCTCAGAT-------GGTT---------------------TATAAGTGTA-----------------------------AAATAGAGGCAACTGG-ATAAAAGAAAAA---------AAAGTCCAATCT-AGTTGTAGTAAACAATACATTTCTAAGTAA--TATGAGGAATACTTGAAAATGCAAGACACTAGCCATGGAACCCTAATGCTGAAAATTTTTTGGAA-TATCAGTTGATATAATTGACTTATTATGTATTCTAACATGTACTTGTATGCAATTGCATGTAGAATTTTGCCTATATTGCCCATGTATTGTATAGATAGATGATATTTAGGACTGTTTGT------CTGTAAGATCCTTTTAGTTTAACACATTTTAGTCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29895450 397 + 172585720 GCTTTGATTTGAATAAA-CCAGAGAACTCTTCAGAGGCATAAATAACCA-GCAATGAAAATGTAGAGATGTGTAATTTTACTGCTTCTCAGAT-------GATT---------------------TATAAGTGTA-----------------------------AAATAGAGGCAATCGG-ATAAAAGAAAAA---------AAAGTCCTATCT-AGTTGTAGTAAACAATACATTTCTAAGTAA--TATGAGGAATACTTGAATATGCAAGACACTAGCCATGGAACCCTAATGCCAAAAATTTTTTGGAATTATCAGTTGATAAAATTGACTTGTTATGTATTCTAACATGTACTTGTATGCAGTTGCATATAGAATTATGCCTGTATTGTCCATGTATTGTATACATAGATCATATTTAGGACTGTTTGT------CTGTAAGATCCTTTTAGTTTAACACATTTTAGTCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29559107 397 - 170955103 GCTTTGATTTGAATAAA-CCAGAGAACTCTTCAGAGGCATAAATAACCA-GCAATGAAAACGTAGAGATGTGTAATTTTACTGCTTCTCAGAT-------GATT---------------------TATAAGTGTA-----------------------------AAATAGAGGCAATCGG-ATAAAAGAAAAA---------AAAGTCCTATCT-AGTTGTAGTAAACAATACATTTCTAAGTAA--TATGAGGAATACTTGAATATGCAAGACACTAGCCATGGAACCCTAATGCCAAAAATTTTTTGGAATTATCAGTTGATAAAATTGACTTGTTATGTATTCTAACATGTACTTGTATGCAGTTGCATATAGAATTATGCCTGTATTGTCCATGTATTGTATACATAGATCATATTTAGGACTGTTTGT------CTGTAAGATCCTTTTAGTTTAACACATTTTAGTCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2544910 397 -   2996164 GCTTTGATTTGAATAAA-CCAGAGAACTCTTCAGAGGCATAAATAACCA-GCAATGAAAACGTAGAGATGTGTAATTTTACTGCTTCTCAGAT-------GATT---------------------TATAAGTGTA-----------------------------AAATAGAGGCAATCGG-ATAAAAGAAAAA---------AAAGTCCTATCT-AGTTGTAGTAAACAATACATTTCTAAGTAA--TATGAGGAATACTTGAATATGCAAGACACTAGCCATGGAACCCTAATGCCAAAAATTTTTTGGAATTATCAGTTGATAAAATTGACTTGTTATGTATTCTAACATGTACTTGTATGCAGTTGCATATAGAATTATGCCTGTATTGTCCATGTATTGTATACATAGATCATATTTAGGACTGTTTGT------CTGTAAGATCCTTTTAGTTTAACACATTTTAGTCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     310554 395 +    766320 ACTTTGATTTGAATAAA-CTAGAGAACTCTTCTGAGGCATAAATAACCA-GCAATGAAAACATAGAGACGTGTAATTTTACTACTTCTAAGAT-------GATT---------------------TATAAGTGTA-----------------------------AAATAGAGGCAATTGG-ATAAAAG-AAAA---------AAAGTCCTATCT-AGTTGTAGTAAACAATACATTTCTAAGTAA--TATGAGGAATACTTGAATATGCAAGACACTAGCCGTGGAACCCTAATGCTGAAAATTTTTTGGAA-TATCAGTTGATAAAATTGACTTGTTATGTATTCTAACATGTACTTGTATGCAGTTGCATATAGAATTATGCCTGTATTGCCCATGTATTGTATACATAGATCATATTTAGGACTGTTTGT------CTGTAAGATCCTTTTAGTTTAACACATTTTAGTCTG
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     286717 395 -    352859 ACTTTGATTTGAATAAA-CTAGAGAACTCTTCTGAGGCATAAATAACCA-GCAATGAAAACATAGAGACGTGTAATTTTACTACTTCTAAGAT-------GATT---------------------TATAAGTGTA-----------------------------AAATAGAGGCAATTGG-ATAAAAG-AAAA---------AAAGTCCTATCT-AGTTGTAGTAAACAATACATTTCTAAGTAA--TATGAGGAATACTTGAATATGCAAGACACTAGCCGTGGAACCCTAATGCTGAAAATTTTTTGGAA-TATCAGTTGATAAAATTGACTTGTTATGTATTCTAACATGTACTTGTATGCAGTTGCTTATAGAATTATGCCTGTATTGCCCATGTATTGTATACATAGATCATATTTAGGACTGTTTGT------CTGTAAGATCCTTTTAGTTTAACACATTTTAGTCTG
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2086073 436 -   2232465 GTTCCAGCTTGAAGAAA-TCTAAGAACTCTTCTGGGAGATAAACAACCAGGCAATGAGAAAATTAAGATATATAACTATATTACTTCTCAAAT-------TGTT---------------------TAGAAATATATAAAAAAGCAAAAATAAAGCAAAATATATGAATAAAGCAAACTGA-ATAAAGCAAAAATATATGT-GACAATATAGTCT-AGTTGTTTTTAACAATGTTTTCCAAGGTTA--TACAAGGGAAATTTGAAATGGGATAACA-TCCCAATAGGGCACAAATGCTAAATTTGTTTTGGGGGTATCAGTTCATAAAATCAATTTGTTATATTTTCTTATGTGTTCTTGTATGAAACTGAGTATACAAGTATGCCCATATTACCCAAGTACTGAGTAGATGGACAA----TAAGTCTATTTATTTAATATTATATGGTCTCTCTAACCTAACACATTATAGCATG
i otoGar3.GL873742         I 3 C 0
s mm10.chr17               57650961 371 -  94987271 TCTCTTACTTGAAGAAATCTAAAGAACTCTACTGAGGTGTAAATAACCAGGCAATAAGAAATTA-AGATATAT-----------TTCTAAAATTAAGATATGTT---------------------TTTAAGTATG-------------------------------ACAGATGCACACAT-ATATTATGAAAA---------ATTGAATGATGGAAAATATATGTAAAAATATGTT-CTAATTAAAGTAAGAGGAA---TTGAACTTGTTGGACTCTAATTATAGAATTCAGTCCCTGAATTTGTTTTGGACATATTAGTTGATAACATGGACTTAGGACACACTCTAATGTGC-CTTGTATGTAACTAGGTATATAAATATGTTTATACTACCTATGTTTAGTATAACTAG----TAATTACACTTGTTCAT------CTGT---------------CAACTCATATTAGTTGG
i mm10.chr17               I 3 C 0
s dasNov3.JH569098           145133 435 -    254539 GTTCTGACTGAAATCAA-TCAGAAA--TCTTATGAGGCTAAAAAAGGCATGCAAGGAGAAAGTTGAGAATTGAATGCATACTTTGCCACAAAT-------AATTTATTTtatatagatatatatatataagtgtg--tgtgtgtgtgtatatatatatatatataaataAAAGGAACAGGTACCAAAAAATAA-----GTGGAATATCTACTAT-GGGTGTGTTAAACAATGCATTCCTAGGTAA--TATTTGTGAAACTTGAAC-TGTTGGACACTGGCTTTGAAACCCTAATGGTGAATTTATTTTAGGA-TATAAGTTGTTATAATTACTTTGTTATATATTCTAGTGTACTCTTAAATGAAATGAAATAAAGTAATATACCTATATTACTCTAGT------------GATTAGAATTAGGTCACTTGAT------CTGTATGATCCTTCTTGATTAATACAATTTAATATG
i dasNov3.JH569098         I 3 I 16
e proCoq1.NW_012152574v1     415764 392 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e chlSab2.chr17            28798646 680 -  71996105 T

a score=138704.000000
s hg38.chr6_GL000254v2_alt   663386 33 +   4827813 ATCAATAAAATTATTATGCTT----TTTT---ATTTTAAG
s panTro5.chr6             29636827 33 + 175400573 ATCAATAAAATTATTGTGCTT----TTTT---ATTTTAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29875029 33 + 173848474 ATCAATAAAATTATTATGCTT----TTTT---ATTTTAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5677937 32 +   6154872 ATCAATAAAATTATTATGC-T----TTTT---ATTTTAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29895847 33 + 172585720 ATCAATAGAATGGTTATGCTT----TTTT---ATTTTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29559504 33 - 170955103 ATCAATAGAATGGTTATGCTT----TTTT---ATTTTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2545307 33 -   2996164 ATCAATAGAATGGTTATGCTT----TTTT---ATTTTAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     310949 33 +    766320 ATCAATAGAATGGTTATGCTT----TTTT---ATATTAAA
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     287112 33 -    352859 ATCAATAGAATGGTTATGCTT----TTTT---ATATTAAA
i manLeu1.NW_012099655v1   C 0 T 5986
s proCoq1.NW_012152574v1     416156 33 +    730504 ATCAATAAAATTATTATGCTT----TTAT---ATTTTGAG
i proCoq1.NW_012152574v1   I 392 C 0
s otoGar3.GL873742          2086509 33 -   2232465 GTCAACAAAATGATTATGTGT----CTAT---ATTTTCAG
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57651332 30 -  94987271 ATGAAT---ATCAATATGCTT----GCTT---ATTTTGAG
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           145584 40 -    254539 ATTAGTAATATTATTGTTGTTAGAATTATGAAATTTTGAG
i dasNov3.JH569098         I 16 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e chlSab2.chr17            28798646 680 -  71996105 T

a score=11856.000000
s hg38.chr6_GL000254v2_alt   663419 4 +   4827813 ---GATT
s panTro5.chr6             29636860 4 + 175400573 ---GATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29875062 4 + 173848474 ---GATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5677969 4 +   6154872 ---GATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29895880 4 + 172585720 ---GATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29559537 4 - 170955103 ---GATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2545340 4 -   2996164 ---GATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     310982 4 +    766320 ---GATt
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     281159 4 -    352859 ---GATT
i manLeu1.NW_012099655v1   T 5986 C 0
s proCoq1.NW_012152574v1     416189 4 +    730504 ---GATT
i proCoq1.NW_012152574v1   C 0 T 13578
s otoGar3.GL873742          2086542 4 -   2232465 ---GATT
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57651362 2 -  94987271 ---GA--
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           145624 4 -    254539 TATG---
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e chlSab2.chr17            28798646 680 -  71996105 T

a score=147.000000
s hg38.chr6_GL000254v2_alt   663423 2 +   4827813 GT-
s panTro5.chr6             29636864 2 + 175400573 GT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29875066 2 + 173848474 GT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5677973 2 +   6154872 GT-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29895884 2 + 172585720 GC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29559541 2 - 170955103 GC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2545344 2 -   2996164 GC-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     310986 2 +    766320 gt-
i cerAty1.NW_012002711v1   C 0 I 431
s manLeu1.NW_012099655v1     281163 2 -    352859 GC-
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2086546 1 -   2232465 -T-
i otoGar3.GL873742         C 0 I 1
s mm10.chr17               57651364 2 -  94987271 AT-
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           145628 2 -    254539 -TT
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     416193 13578 +    730504 T
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e chlSab2.chr17            28798646 680 -  71996105 T

a score=93923.000000
s hg38.chr6_GL000254v2_alt   663425 23 +   4827813 CATGTAGGGCTATGTTTATTCAA
s panTro5.chr6             29636866 23 + 175400573 CATGTAGGGCTATGTTTATTCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29875068 23 + 173848474 CATGTAGGGCTATGTTTATTCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5677975 23 +   6154872 CATGTAGGGCTATGTTTATTCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29895886 23 + 172585720 CATGTAGGGCTATGTTTATTCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29559543 23 - 170955103 CATGTAGGGCTATGTTTATTCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2545346 23 -   2996164 CATGTAGGGCTATGTTTATTCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     311419 23 +    766320 CATGTAGGGCTATGTTTATTCAA
i cerAty1.NW_012002711v1   I 431 C 0
s manLeu1.NW_012099655v1     281165 23 -    352859 CATGTAGGGCTATGTTTATTCAA
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2086548 23 -   2232465 AATTTGAAGCCATGGTTACTGAA
i otoGar3.GL873742         I 1 C 0
s mm10.chr17               57651366 22 -  94987271 TAT-TAATACTATGGTTGCTCAG
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           145630 22 -    254539 GATTTAGGGTCACA-TTACTCAA
i dasNov3.JH569098         C 0 T 25556
e proCoq1.NW_012152574v1     416193 13578 +    730504 T
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e chlSab2.chr17            28798646 680 -  71996105 T

a score=83081.000000
s hg38.chr6_GL000254v2_alt   663448 21 +   4827813 TTGGAAAAGTAAATGCTAACT
s panTro5.chr6             29636889 21 + 175400573 TTGGAAAAGTTAATGCTAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29875091 21 + 173848474 TTGGAAAAGTAAATGCTAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5677998 21 +   6154872 TTGGAAAAGTAAATGCTAACT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29895909 21 + 172585720 TTGGAAAAATAAATGCTAACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29559566 21 - 170955103 TTGGAAAAATAAATGCTAACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2545369 21 -   2996164 TTGGAAAAATAAATGCTAACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     311442 21 +    766320 TTAGAAAAGTAAATGCTAACT
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     281188 21 -    352859 TTAGAAAAGTAAATGCTAACT
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2086571 21 -   2232465 TTTAAAAAGTATATGCTAACT
i otoGar3.GL873742         C 0 I 329
s mm10.chr17               57651388 21 -  94987271 TTGAAAAGTTAGGTGCAAAGC
i mm10.chr17               C 0 C 0
e dasNov3.JH569098           145652 25556 -    254539 T
e proCoq1.NW_012152574v1     416193 13578 +    730504 T
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e chlSab2.chr17            28798646 680 -  71996105 T

a score=257413.000000
s hg38.chr6_GL000254v2_alt   663469 81 +   4827813 TGCATATTATTTAAATAAATTTTAAAGAGGTATGTCATGATTTCTTTTCAGTTCGG--TTGGTT--------TTTGTTCTTTTAATGGTGa
s panTro5.chr6             29636910 81 + 175400573 TGCATATTATTTAAATTAATTTTAAAGAGGTATGTCATGATTTCTTTTCAGTTTGG--TTGGTT--------TTTGTTCTTTTAATAGTGa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29875112 81 + 173848474 TGCATATTATTTAAATAAATTTTAAAGAGGTATGTCATGATTTCTTTTCAGTTCGG--TTGGTT--------TTTGTTCTTTTAATAGtga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5678019 81 +   6154872 TGCATATTATTTAAATAAATTTTAAAGAGGTATGTCATGATTTCTTTTCAGTTCGG--TTGGTT--------GTTGTTCTTTTAATAGtga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29895930 81 + 172585720 TGCATATTATTTAAATAAATTTTAAAGAGGTATGTCATAATTTCTTTTTAGTTTGG--CTGGTT--------TTTGTTCTTTTAATAGtga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29559587 81 - 170955103 TGCATATTATTTAAATAAATTTTAAAGAGGTATGTCATAATTTCTTTTTAGTTTGG--CTGGTT--------TTTGTTCTTTTAATAGtga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2545390 81 -   2996164 TGCATATTATTTAAATAAATTTTAAAGAGGTATGTCATAATTTCTTTTTAGTTTGG--CTGGTT--------TTTGTTCTTTTAATAGTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     311463 81 +    766320 TGCATATTATTTAAATAAATTTTAAAGAGGTACGTCATAATTTCTTTTTAGTTTGG--CTGGTT--------TTTGTTCTTTTAATAGtga
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     281209 81 -    352859 TGCATATTATTTAAATAAATTTTAAAGAGGTACGTCATAATTTCTTTTTAGTTTGG--CTGGTT--------TTTGTTCTTTTAATAGtga
i manLeu1.NW_012099655v1   C 0 C 0
s mm10.chr17               57651409 76 -  94987271 ------------TACTAAAAATTCCAGAGGCAAAAC---ATTTCTTTTATATGTGATTCTGATTCAGTTAAACTTGAGCTTTTGATGGTGA
i mm10.chr17               C 0 I 31295
e dasNov3.JH569098           145652 25556 -    254539 T
e proCoq1.NW_012152574v1     416193 13578 +    730504 T
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2086592 329 -   2232465 I
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e chlSab2.chr17            28798646 680 -  71996105 T

a score=3382172.000000
s hg38.chr6_GL000254v2_alt   663550 1170 +   4827813 ttcaaaatgcaaaagacatagaaagatgtcaaatgtttct-ccccatctctgccctcc-gtcactgacttactcttcatatacaatcaatttaatcagttg-ttatctgtcctcacagagatcctttatgctacacagtcaaatacaaatattttctttaaaaaagaatggcaatgaacaatacatgttatatgagcaaaccaatgttgagggcaatgtgtatcttggagatctttccctattagaacatagagcttctttatttttttaacatgcatggtatatgccactttgttcatgtattatatttgatagatcagtctcctatcattggacatctatgttatttccaatcatatgttgcagtgtataatcttgtgtacacgtcattctatatatgtgcaagtctatttgtaggacaaacttccagacatggaaatgttaggtcaagagatatcgttattgtaattcagatagatactgccaaattgccctccccagaggttataaaaaatttcatcaccacttgcaatgtaaaagtgTTTAGATTTTACACTACATTGAATATGAATAATGCCAATGACTTATTTTGTAGATGCTTCCCTGAAAATATTCTACTTTTACAGCCTGGTTATGTAAAAAATGACATCCTAAAGACACTTTCCATAACATGGAAGTCTGCATAATTCTGCCATTGTTATAGAAAGTTTTCAGACTATTTGAAGCCCAAGCAAGATGGCAACTGGGAGAAAGGAAAAGCTAAGATTACAGCAATTCTTGTCATTGTTAGCTGGCACACAGGCAACATGAAGTGTTTTCCCCTACTTCAGCATAAAATACTTAAAACTTTCCTCTTACTACACCAACAGTTATTCAT-GTGAAAAATTAATCAATTGTGTTGTTTATTATTTTAATCAAAAAAAGCTCTACAGGTGTTAGATTTATGAAAGTCCTGCACAAAA---------TAAAGGAAAGGTGCCCTAAAAGACCCACCGTTTAACTAAAGAAAATGAATCTCACACAGAGGACATGCTGCAGAGAGAATGAGCTACTGAAACACACTAGAATGTTTCATTTCTTTTATGACACAAAAAGAATAGGAAAGAGTGGAAAAAGGGAACAAACTTTTACTAAAAGTTGACAATTTTATTTTTACATTTTATAATACAAATGAAA
s panTro5.chr6             29636991 1170 + 175400573 ttcaaaatgcaaaagacatagaaagatgtcaaatgtttct-ccccatctctgccctct-gtcactgacttactcttcatatacaatcaatgtaatcagttg-ttatctgtcctcacagagatcctttatgctacacagtcaaatacaaatattttctttaaaaaagaatggcaatgaacaatacatgttatatgaacaaaccaatgttgagggcaatgtgtatcttggagatcttttcctattagaacatagagcttctttatttttttaacatgcatgatatatgccactttgttcatgtattatatttgatagatcagtctcctatcattggacatctatgttatttccaatcacatgttgcagtgtataatcttgtgtacacgtcattctatatatgtgcaagtctatttgtaggacaaacttccagacatggaaatgttaggtcaagagatatcgttattgtaattcagatagatactgccaaattgccctgcccagaggttataaaaaatttcatcaccactttcaatgtaaaagtgTTTAGATTTTACACTACATTGAATATGAATAATGCCAATGACTTATTTTGTAGATGCTTCCCTGAAAATATTCTACTTTTACAGCCTGGTTATGTAAAAAATGACATCCTAAAGACACTTTCCATAACATGGAAGTCTGCATAATTCTGCCATTGTTATAGAAAGTTTTCAGACTATTTGAAGCCCAAGCAAGATGGCAACTGGGAGAAAGGAAAAGCTAAGATTACAGCAATTCTTGTCATTGTTAGCTGGCACACAGGCAACATGAAGTGTTTTCCCCTACTTCAGCATAAAATACTTAAAACTTTCCTCTTACTACACCAACAGTTATTCAT-GTGAAAAATTAATCAATTGTGTTGTTTATTATTTTAATCAAAAAAAGCTCTACAGGTTTCAGATTTATGAAAGTCCTGCACAAAA---------TAAAGGAAAGGTGCCCTAAAAGACCCACCGTTTAACTAAAGAAAATGAATCTCACACAGAGGACATGCTGCAGAGAGAATGAGCTACTGAAACACACTAGAATGTTTCATTTCTTTTATGACACAAAAAGAATAGGAAAGAGTGGAAAAAGGGAACAAACTTTTACTAAAAGTTGACAATTTTATTTTTACATTTTATAATACAAATGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29875193 1170 + 173848474 ttcaaaatgcaaaagacatagaaagatgtcaaatgtttct-ccccatctctgccctcc-gtcactgacttactcttcatatacaatcaatgtaatcagttg-ttatctgtcctcacagagatcctttatgctacacagtcaaatacaaatattttctttaaaaaagaatggcaatgaacaatacatgttatatgaacaaaccaatgttgagggcaatgtgtatcttggagatctttccctattagaacatagagcttctttatttttttaacatgcatggtatatgccactttgttcatgtattatatttgatagatcagtctcctatcattggacatctgtgttatttccaatcatatgttgcagtgtataatcttgtgtacacgtcattctatatatgtgcaagtctatttgtaggacaaacttccagacatggaaatgttaggtcaagagatatcgttattgtaattcagatagatactgccaaattgccctccccagaggttataaaaaatttcatcaccacttgcaatgtaaaagtgTTTAGATTTTACACTACATTGAATATGAATAATGCCAATGACTTATTTTGTAGATGCCTCCCTGAAAATATTCTACTTTTACAGCCTGGTTATGTAAAAAATGACATCCTAAAGACACTTTCCATAACATGGAAGTCTGCATAATTCTGCCATTGTTATAGAAAGTTTTCATACTATTTGAAGCCCAAGCAAGATGGCAACTGGGAGAAAGGAAAAGCTAAGATTACAGCAATTCTTGCCATTGTTAGCTGGCACACAGGCAACATGAAGTGTTTTCCCCTACTTCAGCATAAAATACTTAAAACTTTCCTCTTACTACACCAACAGTTATTCAT-GTGAAAAATTAATCAATTGTGTTGTTTATTATTTTAATCAAAAAAAGCTCTACAGGTGTTAGATTTATGAAAGTCCTGCACAAAA---------TAAAGGAAAGGTGCCCTAAAAGACCCACCGTTTAACTAAAGAAAATGAATCTCACACAGAGGACATGCTGCAGAGAGAATGAGCTACTGAAACACACTAGAATGTTTCATTTCTTTTATGACACAAAAAGAATAGGAAAGAGTGGAAAAAGGGAACAAACTTTTACTAAAAGTTGACAATTTTATTTTTACATTTTATAATACAAATGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5678100 1171 +   6154872 ttcaaaatgcaaaagacatagaaagatgtcaaatgtttctcccccatctctgccctcctgtcactgacttactcttcatatacaatcaacgtaatcagttg-ttatctgtcctcacagagatcctttatgctacacagtcaaatacaaatattttctttaaaaaagaatggcaatgaacaatacatgttatatgaacaaacaaatgttgagggcaatgtgtatcttggagatctttccctattagtacctagagcttctttatttttttaacatgcatggtatatgccactttgttcatgtattatatttgatagatcagtctcctatcattggacatctatgttatttccaatcatatgttgcagtgtataatcttgtgtacacgtcattctatatatgtgcaagtctatttgtaggacaaacttccagacatggaaacgttaggtcaagagatatcgttattgtaattcagatagatactgccaaattgccctccccagaggttataaaaaatttcatcaccacttgcaatgtaaaagtgTTTAGATTTTACACTATACTGAATACGAATAATGCCAATGACTTATTTTGTAGATGCTTCCCTGAAAATATTCT-CTTTTACAGCCTGGTTATGTAAAAAATGACATCCTAAAGACACTTTCCATAACATGGAAGTCTGCATAATTCTGCCATTGTTATAGAAAGTTTTCAGACTATTTGAAGCCCAAGCAAGATGGCAACTGGGAGAAAGGAAATGCTAAGATTACAGCAATTCTTGTCATTGTTAGCTGGCATGCAGGCAACATGAAGTATTTTCCCCTACTTCAGCATAAAATACTTAAAACTTTCCTCTTACTACACCAACAGTTATTCAT-GTGAAAAATTAATCAATTGTGTTGTTTATTATTTTAATCAAAAAAAGCTCTACAGGTGTTAGATTTATGAAAGTCCTGCACAAAA---------TAAAGGAAAGGTGCCCTAAAAGACCCACCGTTTAACTAAAGAAAATGAATCTCACACAGAGGACATGCTGCAGAGAGAATGAGCTACTGAAGCACACTAGAATGTTTCATTTCTTTTATGACACAAAAAGAATAGGAAAGAGTGGAAAAAGGGAACAAACTTTTACTAAAAGTTGACAATTTTATTTTTACATTTTATAATACAAATGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29896011 1114 + 172585720 ttcaaaatacaaaagacatagaaaggtgtcaaatgtttctctcccatctctgccctcctgccactcacttactcttcatatacaatcaatgtaaccagttgtttatctgtcctcacagagatcctttatgctacagggtcaaatacaaatattttctttaaaaaagaatggcaatgaacaatacatgttatatgaacaaaccaatgttgaggacaatgtgtatcttggagacctttccctattagtacatagagcttctttatttttttaacgtgcatggtatgtgccactttgttcatgtattattcttgatagatcattctcttgtcattggacgtctatgttatttccaatcacatgttgcagtgtataatcttgtatacacgtcattccatatatgtgcaagtctatttgtaggacagatttccagacatggaaatgttaggtcaagggatatagttattgtaattcagatagagactgacaaa--------------------------------------------------------------------tACACTGAATATGAATGATGCCAATGACTTATTTTGTAGATGCTTCCCTGAAAATATTCTACTTTTACAGCCTGGTTATGTAATAAATGACATCCTAAAGACACCTTCCATAACATGGAAGTCTGTATAATTTTCCCATTGTTATAGAAAGTTTTCAGACTATTTGAAGCCCAAGCAAGACAGCAACTGGGAGAAAGGAAAAACTAAGAATCCAGCAACTCTTGTCATTCTTAGCTGGTACGCATGCAACATGAAGTATTTT-CCCTACTTCAGCATAAAATACTTTAAACTTTCCTGTTATTACGCCAACACTTACTCACGGTGAAAAATGAATCAAGTGTGTTGTTTATTATTTTAATCAAAAATAGCTCTACAGGTGTTAGATTTATGAAAGTCCTGCACAAAAGAACTTTACTAAATCAAGGGTGCCCTAAGAGACCCACCCTATAGCTAAAGAAAAAGAATCTCACACAGAGGACATGCTGCAGAGAGAATGAACTACTGAAACACACTGAAATGTTTCATTTTCTTTCTAACACACAAAGAATAGGAAAGAGTGGAAAACGGGAAGAAACTTTTACTAAAAGTTAACAGTTTTATTTTTACATTTTATAATACAAATGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29559668 1114 - 170955103 ttcaaaatacaaaagacatagaaaggtgtcaaatgtttctctcccatctctgccctcctgccactcacttactcttcatatacaatcaatgtaaccagttgtttatctgtcctcacagagatcctttatgctacagggtcaaatacaaatattttctttaaaaaagaatggcaatgaacaatacatgttatatgaacaaaccaatgttgaggacaatgtgtatcttggagacctttccctattagtacatagagcttctttatttttttaacgtgcatggtatatgccactttgttcatgtattattcttgatagatcattctcttgtcattggacgtctatgttatttccaatcacatgttgcagtgtataatcttgtatacacgtcattccatatatgtgcaagtctatttgtaggacaaatttccagacatggaaatgttaggtcaagggatatagttattgtaattcagatagatactgccaaa--------------------------------------------------------------------tACACTGAATATGAATGATGCCAATGACTTATTTTGTAGATGCTTCCCTGAAAATATTCTACTTTTACAGCCTGGTTATGTAATAAATGACATCCTAAAGACACCTTCCATAACATGGAAGTCTGTATAATTTTCCCATTGTTATAGAAAGTTTTCAGACTATTTGAAGCCCAAGCAAGACAGCAACTGGGAGAAAGGAAAAACTAAGAATCCAGCAACTCTTGTCATTCTTAGCTGGTACGCATGCAACATGAAGTATTTT-CCCTACTTCAGCATAAAATACTTTAAACTTTCCTGTTATTACGCCAACACTTACTCACGGTGAAAAATGAATCAAGTGTGTTGTTTATTATTTTAATCAAAAATAGCTCTACAGGTGTTAGATTTATGAAAGTCCTGCACAAAAGAACTTTACTAAATCAAGGGTGCCCTAAGAGACCCACCCTATAGCTAAAGAAAAAGAATCTCACACAGAGGACATGCTGCAGAGAGAATGAACTACTGAAACACACTGAAATGTTTCATTTTCTTTCTAACACACAAAGAATAGGAAAGAGTGGAAAACGGGAAGAAACTTTTACTAAAAGTTAACAGTTTTATTTTTACATTTTATAATACAAATGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2545471 1114 -   2996164 ttcaaaatacaaaagacatagaaaggtgtcaaatgtttctctcccatctctgccctcctgccactcacttactcttcatatacaatcaatgtaaccagttgtttatctgtcctcacagagatcctttatgctacagggtcaaatacaaatattttctttaaaaaagaatggcaatgaacactacatgttatatgaacaaaccaatgttgaggacaatgtgtatcttggagacctttccctattagtacatagagcttctttatttttctaacgtgcatggtatatgccactttgttcatgtattattcttgatagatcattctcttgtcattggacgtctatgttatttccaatcacatgttgcagtgtataatcttgtatacacgtcattccatatatgtgcaagtctatttgtaggacaaatttccagacatggaaatgttaggtcaagggatatagttattgtaattcagatagatactgccaaa--------------------------------------------------------------------tACACTGAATATGAATGATGCCAATGACTTATTTTGTAGATGCTTCCCTGAAAATATTCTACTTTTACAGCCTGGTTATGTAATAAATGACATCCTAAAGACACCTTCCATAACATGGAAGTCTGTATAATTTTCCCATTGTTATAGAAAGTTTTCAGACTATTTGAAGCCCAAGCAAGACAGCAACTGGGAGAAAGGAAAAACTAAGAATCCAGCAACTCTTGTCATTCTTAGCTGGTACGCATGCAACATGAAGTATTTT-CCCTACTTCAGCATAAAATACTTTAAACTTTCCTGTTATTACGCCAACACTTACTCACGGTGAAAAATGAATCAAGTGTGTTGTTTATTATTTTAATCAAAAATAGCTCTACAGGTGTTAGATTTATGAAAGTCCTGCACAAAAGAACTTTACTAAATCAAGGGTGCCCTAAGAGACCCACCCTATAGCTAAAGAAAAAGAATCTCACACAGAGGACATGCTGCAGAGAGAATGAACTACTGAAACACACTGAAATGTTTCATTTTCTTTCTAACACACAAAGAATAGGAAAGAGTGGAAAACGGGAAGAAACTTTTACTAAAAGTTAACAGTTTTATTTTTACATTTTATAATACAAATGAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     311544 1112 +    766320 ttcaaaatacaaaagacgtagaaaggtgtcaaatgtttctctcccatctctgccctcctgccactcacttactcttcatatacaatcagtgtaaccagttgtttatctgtcctcacagagatcctttatgctacagggtcaaatacaaatattttctttaaaaaagaatggcaatgaacaatacatgttatatgaacaaacaaatgttgaggacaatgtgtatcttggagacctttccctattagtacatagagcttctttatttttttaacgtgcatggtatatgccactttgttcatgtattatacttgatagatcattctcctgtcattggacatctatgttatttccaatcacatgttgcagtgtataatcttgtatacacatcattccatatatgtgcaagtctatttgtaggacaaatttccagacatggaaatgttaggtcaagggatatacttattgtaattcagatagatactgccaaa--------------------------------------------------------------------tgcactgaatatgaatgatgccaatGACTTATTTTGTAGATGCTTCCCTGAAAATATTCTACTTTTACAGTCTGGTTATGTAATAAATGACATCCTAAAGACACCTTCCAT--CATGGAAGTCTGTATAATTTTCCCATTGTTATAGAAAGTTTTCAGACTATTTGAAACCCAAGCAAGACAGCAACTGGGAGAAAGGAAAAACTAAGAATCCAGCAACTCTTGTCATTCTTAGCTGGTACGCATGCAACATGAAGTATTTT-CCCTACTTCAGCATAAAATACTTTAAACTTTCCTGTTATTACACCAACACTTACTCACGGTGAAAAATGAATCAAGTGTGTTGTTTATTATTTTAATCAAAAATAGCTCTACAGGTGTTAGATTTATGAAAGTCCTGCACAAAAGAACTTTACTAAATCAAGGCTGCCCTAAGAGACCCACCCTATAGCTAAAGAAAAAGAATCTCACACAGAGGACATGCTGCAGAGAGAATGAACTACTGAAACACACTGGAATGTTTCATTTTCTTTCTAACACACAAAGAATAGGAAAGAGTGGAAAAAGGGAAGAAACTTTTACTAAAAGTTAGCAGTTTTATTTTTACATTTTATAATACAAATGAAA
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     281290 1114 -    352859 ttcaaaatacaaaagacgtggaaaggtgtcaaatgtttctctcccatctctgccctcctgccactcacttactcttcatatacaatcagtgtaaccagttgtttatctgtcctcacagagatcctttatgctacagggtcaaatacaaatattttctttaaaaaagaatggcaatgaacaatacatgttatatgaacaaacaaatgttgaggacaatgtgtatcttggagacctttccctattagtacatatagcttctttatttttttaacgtgcatggtatatgccactttgttcatgtattatacttgatagatcattctcctgtcattggacatctatgttatttccaatcacatgttgcagtgtataatcttgtatacacgtcattccatatatgtgcaagtctatttgtaggacaaatttccagacatggaaatgttaggtcaagggatatacttattgtaattcagatagatactgccaaa--------------------------------------------------------------------tgcactgaatatgaatgatgccaatGACTTATTTTGTAGATGCTTCCCTGAAAATATTCTACTTTTACAGTCTGGTTATGTAATAAATGACATCCTAAAGACACCTTCCATAACATGGAAGTCTGTATAATTTTCCCATTGTTATAGAAAGTTTTCAGACTATTTGAAGCCCAAGCAAGACAGCAACTGGGAGAAAGGAAAAACTAAGAATCCAGCAACTCTTGTCATTCTTAGCTGGTACGCATGCAACATGAAGTATTTT-CCCTACTTCAGCATAAAATACTTTAAACTTTCCTGTTATTACACCAACACTTACTCACGGTGAAGAATGAATCAAGTGTGTTGTTTATTATTTTAATCAAAAATAGCTCTACAGGTGTTAGATTTATGAAAGTCCTGCACAAAAGAACTTTACTAAATCAAGGCTGCCCTAAGAGACCCACCCTATAGCTAAAGAAAAAGAATCTCACACAGAGGACATGCTGCAGAGAGAATGAACTACTGAAACACACTGGAGTGTTTCATTTTCTTTCTAACACACAAAGAATAGGAAAGAGTGGAAAAAGGGAAGAAACTTTTACTAAAAGTTAACAGTTTTATTTTTACATTTTATAATACAAATGAAA
i manLeu1.NW_012099655v1   C 0 C 0
e mm10.chr17               57651485 31295 -  94987271 I
e dasNov3.JH569098           145652 25556 -    254539 T
e proCoq1.NW_012152574v1     416193 13578 +    730504 T
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2086592  329 -   2232465 I
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e chlSab2.chr17            28798646  680 -  71996105 T

a score=4095.000000
s hg38.chr6_GL000254v2_alt   664720 1 +   4827813 A
s panTro5.chr6             29638161 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29876363 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5679271 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29897125 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29560782 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2546585 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     312656 1 +    766320 A
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     282404 1 -    352859 A
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2086921 1 -   2232465 A
i otoGar3.GL873742         I 329 C 0
e mm10.chr17               57651485 31295 -  94987271 I
e dasNov3.JH569098           145652 25556 -    254539 T
e proCoq1.NW_012152574v1     416193 13578 +    730504 T
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e chlSab2.chr17            28798646 680 -  71996105 T

a score=220704.000000
s hg38.chr6_GL000254v2_alt   664721 70 +   4827813 ATGCTTTTTAC------------TTGGTCCAGAGAGGCTAATAAGTAATTAAATTGAATGACATTGCAACCACTAATTAAGA--
s panTro5.chr6             29638162 70 + 175400573 ATGCTTTTTAC------------TTGGTCCAGAGAGGCTAATAAGTAATTAAATTGAATGACATTGCGACCACTAATTAAGA--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29876364 70 + 173848474 ATGCTTTTTAC------------TTGGTCCAGAGAGGCTAATAAGTAATTAAATTGAATGACATTGCGACCACTAATTAAGA--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5679272 70 +   6154872 ATGCTTTTTAC------------TTGGTCCAGAGAGGCTAATAAGTAATTAAACTGAATGACATTGCGACCACTAATTAAGA--
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29897126 82 + 172585720 ATGCTTTTTAAGTAATAAAATAAGTAATTAAAATAAGCAAATAAGCAATTAAACTGAATGACATTGCAATCACTAATTAAGA--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29560783 82 - 170955103 ATGCTTTTtaagtaataaaataagtaattaaaataagCAAATAAGCAATTAAACTGAATGACATTGCAATCACTAATTAAGA--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2546586 82 -   2996164 ATGCTTTTtaagtaataaaataagtaattaaaataagCAAATAAGCAATTAAACTGAATGACATTGCAATCACTAATTAAGA--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     312657 82 +    766320 ATGCTTTTtaagtaataaaataggtaattaaaataagcaaataaataattaaaCTGAATGACATTGCAATCACTAATTAAGA--
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     282405 82 -    352859 ATGCTTTttaagtaataaaataagtaattaaaataagcaaataaataattaaACTGAATGACATTGCAATCACTAATTAAGA--
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2086922 70 -   2232465 ATTTTTTGTTC------------TTCACACAGAGAGGCAAATAATTAATTAAAACAAATTACAGGACAATAATTAATTAAAA--
i otoGar3.GL873742         C 0 T 5150
s dasNov3.JH569098           120096 75 -    254539 ATGTGTTTTTCTTC---------TCCAAGCAAGGAAATCAATAAGTAATTAAAGTCAATGACATTGTAATCAGTAATTAACAGA
i dasNov3.JH569098         T 25556 C 0
e mm10.chr17               57651485 31295 -  94987271 I
e proCoq1.NW_012152574v1     416193 13578 +    730504 T
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e chlSab2.chr17            28798646 680 -  71996105 T

a score=872976.000000
s hg38.chr6_GL000254v2_alt   664791 291 +   4827813 GATAAAACAACCAATTGTTCAGCTAAGA-GTTCTGGTACCTATATCTTCAGAGATGTTTTAGAAGTCAACTGGCCAGAC-TTCAAGGATTACTATGAAATACCATTAAAAGTGGAGCTAGGTA--------aaacaaacaaacaaacaaaaaacaCCTCAAGAATCACTTTGTATCTCATTAGAGTGTTATAACCACTCGTATCTCTCCACCCTTGG-----TCATGAAAGATGATGACTTTAAACACTCTATTATTTTGGTTTCGTTTTCCTTTATCTGTCCTTATTTTGACAGACTGTAATGCA
s panTro5.chr6             29638232 299 + 175400573 GATAAAACAACCAATTGTTCAGCTAAGA-GTTCTGGTACCTATATCTTCAGAGATGTTTTAGAAGTCAACTGGCCAGAC-TTCAAGGATTACTATGAAATACCATTAAAAGTGGAGCTAGGTAaaacaaacaaacaaacaaacaaacaaaaaacaCCTCAAGAATCACTTTGTATCTCATTAGAGTGTTATAACCACTCGTATCTCTCCACCCTTGG-----TCATGAAAGATGATGACTTTAAACACTCTATTATTTTGGTTTCGTTTTCCTTTATCTGTCCTTATTTTGACAGATTGTAATGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29876434 299 + 173848474 GATAAAACAACCAATTGTTCAGCTAAGA-GTTCTGGTACCTATATCTTCAGAGATGTTTTAGAAGTCAACTGGCCAGAC-TTCAAGGATTACTATGAAATACCATTAAAAGTGGAGCTAGGTAaaacaaacaaacaaacaaacaaacaaaaaacaCCTCAAGAATCACTTTGTATCTCATTAGAGTGTTATAACCACTCGTATCTCTCCACCCTTGG-----TCATGAAAGATGATGACTTTAAACACTCTATTATTTTGGTTTCGTTTTCCTTTATCTGTCCTTATTTTGACAGATTGTAATGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5679342 294 +   6154872 GATAAAACAACCAATTGTTCAGCTAAGA-GTTCTGGTACCTATATCTTCAGAGATGTTTTAGAAGTCAACTGGCCAGAC-TTCAAGGATTACTATGAAATACCATTAAAAGTGGAGCTAGGTA----aaacaaacaaacaaacaaacaaaaaacaCCTCAAGAATCACTTTGTATCTCATTAGAGTGTTATAACCACTCGTATCTCTCCA-CCTTGG-----TCATGAAAGATGATGACTTTAAACACTCTATTATTTTGGTTTCGTTTTCCTTTATCTGTCCTTATTTTGACAGATTGTAATGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29897208 279 + 172585720 GATAAAACAACCGATTGTTCAGCTAAGA-GTTCTGGTACCTATATCTTCAGAGATGTTTTAGAGGTGAACTGGCCAGAC-TTCAAGGATTACTACGAAATACCATTAAAAGTGGAGTTAGGTT------------GAAAAGAA----AAGAAAACCCTCAAGAATCACTTTGTATCTCATTAGAGTGTTATAACCA----TATCAATCCACCCTTGG-----TCATGAAAGATGATGACTTTAAACATGCTATTATTTTGGTTTCGTTTTCCTATATCTGTCCTTACTTTGACAGATTGTAATGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29560865 279 - 170955103 GATAAAACAACCGATTGTTCAGCTAAGA-GTTCTGGTACCTATATCTTCAGAGATGTTTTAGAGGTGAACTGGCCAGAC-TTCAAGGATTACTACGAAATACCATTAAAAGTGGAGTTAGGTT------------GAAAAAAA----AAGAAAACCCTCAAGAATCACTTTGTATCTCATTAGAGTGTTATAACCA----TATCAATCCACCCTTGG-----TCATGAAAGATGATGACTTTAAACATGCTATTATTTTGGTTTCGTTTTCCTATATCTGTCCTTACTTTGACAGATTGTAATGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2546668 279 -   2996164 GATAAAACAACCGATAGTTCAGCTAAGA-GTTCTGGTACCTATATCTTCAGAGATGTTTTAGAGGTGAACTGGCCAGAC-TTCAAGGATTACTACGAAATACCATTAAAAGTGGAGTTAGGTT------------GAAAAAAA----AAGAAAACCCTCAAGAATCACTTTGTATCTCATTAGAGTGTTATAACCA----TATCAATCCACCCTTGG-----TCATGAAAGATGATGACTTTAAACACGCTATTATTTTGGTTTCGTTTTCCTATATCTGTCCTTACTTTGACAGATAGTAATGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     312739 283 +    766320 GATAAAACAACCGATTGTTCAGCTAAGA-GTTCCGGTACCTATATCTTCAGAGATATTTCAGAAGTGAACTGGTCAGAC-TTCAAGGATTACTATGAAATACCATTAAAAGTGGAGCTGGGTT------------aaaaaaaaaaacaaaaaaaCCCTCAACAATCACTTTGTATCTCATTAGAGTGTTATAACTA----TATCAATCCACCCTTGG-----TCATGAAAGATGATGACTTTAAACACGCTATTATTTTGGTTTCGTTTTCCTGTATGTGTCCTTACTTTGACAGATTGTAATGCA
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     282487 283 -    352859 GATAAAACAACCGATTGTTCAGCTAAGA-GTTCCGGTACCTATATCTTCAGAGATATTTCAGAAGTGAACTGGTCAGAC-TTCAAGGATTACTATGAAATACCATTAAAAGTGGAGCTGGGTT------------aaaaaaaaaaacaaaaaaaCCCTCAACAATCACTTTGTATCTCATTAGAGTGTTATAACTA----TATCAATCCACCCTTGG-----TCATGAAAGATGATGACTTTAAACACGCTATTATTTTGGTTTCGTTTTCCTGTATCTGTCCTTACTTTGACAGATTGTAATGCA
i manLeu1.NW_012099655v1   C 0 C 0
s dasNov3.JH569098           120171 249 -    254539 AATAAAATAACCAAAGGGCCACCTAAAATGTACTGGAATCTCTCTATCCAGAGATCTTTTGGAATTAAGC-AACCATACTTTCAAAGAATCCTGTGAAATCGCA-TAAAACTGCAAGCAGGTT------------TGAAAAAC--------------TGCACAATTTCTTTT------------GTCTAATGACCG----TATTATTTTCCCTTTGGATGGAACATGGAAAATTATGACTTTCAAAACCCTTTCAATTTTTTTTTGTTTTCCT-------------TTTTGAAAGGGTGTATTGAA
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57651485 31295 -  94987271 I
e proCoq1.NW_012152574v1     416193 13578 +    730504 T
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2086992 5150 -   2232465 T
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e chlSab2.chr17            28798646 680 -  71996105 T

a score=1099387.000000
s hg38.chr6_GL000254v2_alt   665082 290 +   4827813 TGTAATATGATGAAATACAGGTGAAATAC-AAAAAATTCATGAAAATTTATTTTTCTTTTCCTT---TGGTACCAAACTCATACTAAGTGAAAACAATGAAATCATAACTGTGGAAGTATTTCTGGAGCTAATAGACAAGAATAGGTATGATGTTTCTTAGTTTCTAAGTACTTAGAAATGGATTCTGGCTCTGAAAAG-ATGTGGTATGCCAACATTTGTAACTATTTAGAGAT----ACAAATAGACAAGACTATGGAAGC-TAAGTTGAGCGGGTGGGCTGACTATTCAAAACCTCT
s panTro5.chr6             29638531 290 + 175400573 TGTAATATGATGTAATACAGGTGAAATAC-AAAAAATTCATGAAAATTTATTTTTCTTTTCCTT---TGGTACCAAACTCATACTAAGTGAAAACAATGAAATCATAATTGTGGAAGTATTTCTGGAGCTAATAGACAAGAATAGGTATGATGTTTCTTAGTTTCTAAGTACCTAGAAATGGATTCTGGCTCTGAAAAG-ATGTGGTATGCCAACATTTGTAACTATTTAGAGAT----ACAAATAGACAAAACTATGGAAGC-TATGTTGAGCGGGTGGGCTGACTTTTCAAAACCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29876733 290 + 173848474 TGTAATATGATGTAATACAGGTGAAATAC-AAAAAATTCATGAAAATTTATTTTTCTTTTCCTT---TGGTACCAAACTCATACTAAGTGAAAACAATGAAATCATAATTGTGGAAGTATTTCTGGAGCTAATAGACAAGAATAGGTATGATGTTTCTTAGTTTCTAAGTACCTAGAAATGGATTCTGGCTCTGAAAAG-ATGTGGTATGCCAACATTTGTAACTATTTAGAGAT----ACAAATAGACAAGACTATGGAAGC-TATGTTGAGCGGGTGGGCTGACTATTCGAAACCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5679636 290 +   6154872 TGTAATATGATGTAATAAAGGCGAAATAC-AAAAAATTCATGAAAATTTATTTTTCTTTTCCTT---TGGTACCAAACTCATACTAAGTGAAAACAATGAAATCATAATTGTGGAAGTATTTCTGGAGCTAATAGACAAGAATAGGTATGATGTTTCTTAGTTTCTAAGTACCTAGAAATGGATTCTGGCTCTGAAAAG-ATGTCGTATGCCAACATTTGTAACTATTTAGAGAT----ACAAGTAGACAAGACTGTGGAAGC-TATGTTGAGCGGGTTGGCTGACTATTCAAAACCTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29897487 287 + 172585720 TGTAATATGATGTAATACAGGTGAAATACAAAAAAATTCGTG---ATTT-TTTTTCTTTTCCTT---TGGTACCAAACTCATACTAAGTGAAAACAATGAAATTATAATTGCGGAGGTATTTCTGGAGCTAATAGAAAAGAATAGGTGTGATGTTTCTCAGATTCTAAGTACCTAGAAGTGGATTCTGACCCTGAAAAG-ATGTGATATGCCAACATTTGTAACTGTTTAGAGAT----AAAAATAGATAACACTATGGAAAC-TATGTTGAGCGGGTGGGCTGACTGTTCAAAACCCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29561144 287 - 170955103 TGTAATATGATGTAATACAGGTGAAATACAAAAAAATTCGTG---ATTT-TTTTTCTTTTCCTT---TGGTACCAAACTCATACTAAGTGAAAACAATGAAATTATAATTGCGGAGGTATTTCTGGAGCTAATAGAAAAGAATAGGTGTGATGTTTCTCAGATTCTAAGTACCTAGAAGTGGATTCTGACCCTGAAAAG-ATGTGATATGCCAACATTTGTAACTGTTTAGAGAT----AAAAATAGATAACACTATGGAAAC-TATGTTGAGCGGGTGGGCTGACTGTTCAAAACCCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2546947 287 -   2996164 TGTAATATGATGTAATACAGGTGAAATACAAAAAAATTCGTG---ATTT-TTTTTCTTTTCCTT---TGGTACCAAACTCATACTAAGTGAAAACAATGAAATTATAATTGCGGAGGTATTTCTGGAGCTAATAGAAAAGAATAGGTATGATGTTTCTCAGATTCTAAGTACCTAGAAGTGAATTCTGGCCCTGAAAAG-ATGTGATATGCCAACATTTGTAACTGTTTAGAGAT----AAAAATAGATAACACTATGGAAAC-TATGTTGAGCGGGTGGGCTGACTGTTCAAAACCCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     313022 289 +    766320 TGTAATATGATGTAATACAGGTGAAATACAAAAAAATTCGTG-ATATTT-TTTTTCTTTTCCTT---TGGTACCAAACTCATACTAAGTGAAAACAATGAAATCATAATTGCGTACGTATTTCTGGAGCTAATAGAAAAGAATAGGTATGATGTTTCTTAGATTCTAAGTACCTAGAAGTGGATTCTGGCCCTGAAAAG-ATGTGATATGCCAACATTTGTAACTGTTTAGAGAT----ACAAATAGACAACACTATGGAAGC-TATGTTGAGCGGGTGGGCTGACTATTCAAAACCCCT
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     282770 289 -    352859 TGCAATATGATGTAATACAGGTGAAATACAAAAAAATTCGTG-ATATTT-TTTTTCTTTTCCTT---TGGTACCAAACTCATACTAAGTGAAAACAATGAAATCATAATTGCGGACGTATTTCTGGAGCTAATAGAAAAGAATAGGTATGATGTTTCTTAGATTCTAAGTACCTAGAAGTAGATTCTGGCCCTGAAAAG-ATGTGATATGCCAACATTTGTAACTGTTTAGAGAT----ACAAATAGACAACACTATGGAAGC-TATGTTGAGCGGGTGGGCTGACTATTCAAAACCCCT
i manLeu1.NW_012099655v1   C 0 C 0
s proCoq1.NW_012152574v1     402615 290 +    730504 TGTAATATGATGCAATATAGGTAAAATAT-GAAGAATTCATCAAAATTTTGTTTTCTTTTCCCT---TGGCACCAAATTCATACTAAGCGAAAGCAATCAAGTCATAATTGTTGACACATTTCTGGAGTTAATAGACAAGATAAGGTACTATGTCTCTTAGTTTCTAAGTACATAGAAGTGGCTTCTACCCCTGAAAGG-ATTTGGCATGCCAACATTTGTAACTATTTAGAGAT----ACAAATAGACAAAACTATGAAAGC-TATTTTGAGCTGATGGGCTGACTGTTCAAAACCTCT
i proCoq1.NW_012152574v1   T 13578 I 9569
s dasNov3.JH569098           120420 289 -    254539 ----CTATGGTGTAATGCTGGAGAAATAT-GAAGATTTCAATAAAACTTTGTATTGTTTTCCTTTTCTGACAACAAACTCCTACTAATTTAAGGCAATGAAATCTTTGGTATTGAGATGATTCTGGAACAAATAGACAAA---AGGTATTATGTTCCTCA-TTTCGAGGTATCTATAAGTGACAAATGGTACTAAAATGTAGGGGAGTTGCCAACATTT-TATGTATTTAGAAAGTCAAACAATCAGAGAAGACAATAAAAATACATTTTGAAATGTAGGGCTACCGATTTAAGAATCT-
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57651485 31295 -  94987271 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2086992 5150 -   2232465 T
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e chlSab2.chr17            28798646 680 -  71996105 T

a score=68581.000000
s hg38.chr6_GL000254v2_alt   665372 19 +   4827813 GCCTTCACTTTTGCAAACC
s panTro5.chr6             29638821 19 + 175400573 GCCTTCACTTTTGCAAACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29877023 19 + 173848474 GCCTTCACTTTTGCAAACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5679926 19 +   6154872 GCCTTCACTTTTGCAAACC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29897774 19 + 172585720 GCCTTCACTTTTGCAAACG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29561431 19 - 170955103 GCCTTCACTTTTGCAAACG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2547234 19 -   2996164 GCCTTCACTTTTGCAAACG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     313311 19 +    766320 GCCTTCACTTTCGCAAATG
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     283059 19 -    352859 GCCTTCACTTTCGCAAACG
i manLeu1.NW_012099655v1   C 0 C 0
s dasNov3.JH569098           120709 19 -    254539 GCATTCACTCTTGCAGACc
i dasNov3.JH569098         C 0 I 27456
e mm10.chr17               57651485 31295 -  94987271 I
e proCoq1.NW_012152574v1     402905 9569 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2086992 5150 -   2232465 T
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e chlSab2.chr17            28798646 680 -  71996105 T

a score=44405.000000
s hg38.chr6_GL000254v2_alt   665391 15 +   4827813 CAAACGATCTGACCT
s panTro5.chr6             29638840 15 + 175400573 CAAACGATCTGACCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29877042 15 + 173848474 CAAACGATCTGACCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5679945 15 +   6154872 CAAATGATCTCACCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29897793 15 + 172585720 CAAATGATCTGACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29561450 15 - 170955103 CAAATGATCTGACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2547253 15 -   2996164 CAAATGATCTGACTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     313330 15 +    766320 CAAATGATCTGACTT
i cerAty1.NW_012002711v1   C 0 I 4590
s manLeu1.NW_012099655v1     283078 15 -    352859 CAAATGATCTGACTT
i manLeu1.NW_012099655v1   C 0 I 4815
e mm10.chr17               57651485 31295 -  94987271 I
e dasNov3.JH569098           120728 27456 -    254539 I
e proCoq1.NW_012152574v1     402905 9569 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2086992 5150 -   2232465 T
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e chlSab2.chr17            28798646 680 -  71996105 T

a score=44532.000000
s hg38.chr6_GL000254v2_alt   665406 13 +   4827813 CTCTCTGGTACTT
s panTro5.chr6             29638855 13 + 175400573 CTCTCTGGTACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29877057 13 + 173848474 CTCTCTGGTACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5679960 13 +   6154872 CTCTCTGGTACTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29897808 13 + 172585720 CTCTCTGGTACTT
i rheMac8.chr4             C 0 I 6477
s macFas5.chr4             29561465 13 - 170955103 CTCTCTGGTACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2547268 13 -   2996164 CTCTCTGGTACtt
i macNem1.NW_012011356v1   C 0 I 6503
s cerAty1.NW_012002711v1     317935 13 +    766320 CTCTCTGGTACTT
i cerAty1.NW_012002711v1   I 4590 C 0
s manLeu1.NW_012099655v1     287908 13 -    352859 CTCTCTGGTACTT
i manLeu1.NW_012099655v1   I 4815 C 0
e mm10.chr17               57651485 31295 -  94987271 I
e dasNov3.JH569098           120728 27456 -    254539 I
e proCoq1.NW_012152574v1     402905 9569 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2086992 5150 -   2232465 T
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e chlSab2.chr17            28798646 680 -  71996105 T

a score=14318.000000
s hg38.chr6_GL000254v2_alt   665419 5 +   4827813 CTTCT
s panTro5.chr6             29638868 5 + 175400573 CTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29877070 5 + 173848474 CTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5679973 5 +   6154872 CTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29904298 5 + 172585720 CTTTT
i rheMac8.chr4             I 6477 C 0
s macFas5.chr4             29561478 5 - 170955103 CTTTT
i macFas5.chr4             C 0 I 6482
s macNem1.NW_012011356v1    2553784 5 -   2996164 CTTTT
i macNem1.NW_012011356v1   I 6503 C 0
s cerAty1.NW_012002711v1     317948 5 +    766320 CTTTT
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     287921 5 -    352859 CTTTT
i manLeu1.NW_012099655v1   C 0 C 0
e mm10.chr17               57651485 31295 -  94987271 I
e dasNov3.JH569098           120728 27456 -    254539 I
e proCoq1.NW_012152574v1     402905 9569 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2086992 5150 -   2232465 T
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e chlSab2.chr17            28798646 680 -  71996105 T

a score=16703464.000000
s hg38.chr6_GL000254v2_alt   665424 5569 +   4827813 [encoded data, 5689 characters]
s panTro5.chr6             29638873 5571 + 175400573 [encoded data, 5689 characters]
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29877075 5587 + 173848474 [encoded data, 5689 characters]
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5679978 5536 +   6154872 [encoded data, 5689 characters]
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29904303 5518 + 172585720 [encoded data, 5689 characters]
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29567965 5526 - 170955103 [encoded data, 5689 characters]
i macFas5.chr4             I 6482 C 0
s macNem1.NW_012011356v1    2553789 5544 -   2996164 [encoded data, 5689 characters]
i macNem1.NW_012011356v1   C 0 I 9281
s cerAty1.NW_012002711v1     317953 5564 +    766320 [encoded data, 5689 characters]
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     287926 5538 -    352859 [encoded data, 5689 characters]
i manLeu1.NW_012099655v1   C 0 C 0
e mm10.chr17               57651485 31295 -  94987271 I
e dasNov3.JH569098           120728 27456 -    254539 I
e proCoq1.NW_012152574v1     402905 9569 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2086992 5150 -   2232465 T
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e chlSab2.chr17            28798646  680 -  71996105 T

a score=45620.000000
s hg38.chr6_GL000254v2_alt   670993 21 +   4827813 CCTCTACATCAGTCCTTGGCC
s panTro5.chr6             29644444 21 + 175400573 cctctacgtcagtccttggcc
i panTro5.chr6             C 0 I 8974
s panPan2.chr6             29882662 21 + 173848474 cctctacatcagtccttggcc
i panPan2.chr6             C 0 I 8986
s gorGor5.CYUI01015250v1    5685514 21 +   6154872 cctctacatcagtccttggcc
i gorGor5.CYUI01015250v1   C 0 I 8984
s rheMac8.chr4             29909821 21 + 172585720 accctgcgccagtccttggcc
i rheMac8.chr4             C 0 I 9919
s macFas5.chr4             29573491 21 - 170955103 accctgcgccagtccttggcc
i macFas5.chr4             C 0 I 9888
s cerAty1.NW_012002711v1     323517 21 +    766320 accctgcgccagtccttggcc
i cerAty1.NW_012002711v1   C 0 I 9262
s manLeu1.NW_012099655v1     293464 21 -    352859 accctgcgccagtccttggcc
i manLeu1.NW_012099655v1   C 0 I 10540
e mm10.chr17               57651485 31295 -  94987271 I
e dasNov3.JH569098           120728 27456 -    254539 I
e proCoq1.NW_012152574v1     402905 9569 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2086992 5150 -   2232465 T
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e chlSab2.chr17            28798646 680 -  71996105 T
e macNem1.NW_012011356v1    2559333 9281 -   2996164 I

a score=0.000000
s hg38.chr6_GL000254v2_alt   671014 8989 +   4827813 [encoded data, 8989 characters]
e mm10.chr17               57651485 31295 -  94987271 I
e dasNov3.JH569098           120728 27456 -    254539 I
e proCoq1.NW_012152574v1     402905 9569 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2086992 5150 -   2232465 T
e colAng1.NW_012115566v1    2411328 3505 -   3067355 T
e manLeu1.NW_012099655v1     293485 10540 -    352859 I
e chlSab2.chr17            28798646  680 -  71996105 T
e cerAty1.NW_012002711v1     323538 9262 +    766320 I
e macNem1.NW_012011356v1    2559333 9281 -   2996164 I
e macFas5.chr4             29573512 9888 - 170955103 I
e rheMac8.chr4             29909842 9919 + 172585720 I
e gorGor5.CYUI01015250v1    5685535 8984 +   6154872 I
e panPan2.chr6             29882683 8986 + 173848474 I
e panTro5.chr6             29644465 8974 + 175400573 I

a score=13500.000000
s hg38.chr6_GL000254v2_alt   680003 3 +   4827813 GGC
s panTro5.chr6             29653439 3 + 175400573 GGC
i panTro5.chr6             I 8974 C 0
s panPan2.chr6             29891669 3 + 173848474 GGC
i panPan2.chr6             I 8986 C 0
s gorGor5.CYUI01015250v1    5694519 3 +   6154872 GGC
i gorGor5.CYUI01015250v1   I 8984 C 0
s rheMac8.chr4             29919761 3 + 172585720 GGC
i rheMac8.chr4             I 9919 C 0
s macFas5.chr4             29583400 3 - 170955103 GGC
i macFas5.chr4             I 9888 C 0
s macNem1.NW_012011356v1    2568614 3 -   2996164 GGC
i macNem1.NW_012011356v1   I 9281 C 0
s cerAty1.NW_012002711v1     332800 3 +    766320 GGC
i cerAty1.NW_012002711v1   I 9262 C 0
s manLeu1.NW_012099655v1     304025 3 -    352859 GGC
i manLeu1.NW_012099655v1   I 10540 C 0
s colAng1.NW_012115566v1    2407823 3 -   3067355 GGC
i colAng1.NW_012115566v1   T 3505 C 0
e mm10.chr17               57651485 31295 -  94987271 I
e dasNov3.JH569098           120728 27456 -    254539 I
e proCoq1.NW_012152574v1     402905 9569 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2086992 5150 -   2232465 T
e chlSab2.chr17            28798646 680 -  71996105 T

a score=128733.000000
s hg38.chr6_GL000254v2_alt   680006 30 +   4827813 CATAGTTCTAAAACTAAGGAACAAACTTAG-
s panTro5.chr6             29653442 30 + 175400573 CATAGTTCTAAAACTAAGGAACAAACTTAG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29891672 30 + 173848474 CATAGTTCTAAAACTAAGGAACAAACTTAG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5694522 30 +   6154872 CATAGTTCTAAAACTAAGGAACAAACTTAG-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29919764 30 + 172585720 CATAGTTCTAAAACTAAGGAACAAACATAG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29583403 30 - 170955103 CATAGTTCTAAAACTaaggaacaaacatag-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2568617 30 -   2996164 CATAGTTCTAAAACTaaggaacaaacatag-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     332803 30 +    766320 CATAGTTCTAAAACTAAGGAACAAACATAG-
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     304028 30 -    352859 CATAGTTCTAAAACTaaggaacaaacatag-
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2407826 30 -   3067355 CATAGTTCTAAAACTaaggaacaaacatag-
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH569098           148184 31 -    254539 CATGGTACTGAAACCAAGTAAAACACATTAG
i dasNov3.JH569098         I 27456 C 0
e mm10.chr17               57651485 31295 -  94987271 I
e proCoq1.NW_012152574v1     402905 9569 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2086992 5150 -   2232465 T
e chlSab2.chr17            28798646 680 -  71996105 T

a score=69127.000000
s hg38.chr6_GL000254v2_alt   680036 24 +   4827813 TAAGG--aaaaa----aaaaaaacaagaat
s panTro5.chr6             29653472 24 + 175400573 TAAGG--GAAAA----AAAAAACCAAGAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29891702 25 + 173848474 TAAGG--GAAAA---CAAAAAAACAAGAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5694552 25 +   6154872 TAAGG--GAAAA---AAAAAAAACGAGAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29919794 29 + 172585720 TAAGG-aaaaaaaagaaataaaacaagaat
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29583433 30 - 170955103 taaggaaaaaaaaagaaataaaacaagaat
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2568647 28 -   2996164 taagg--aaaaaaagaaataaaacaagaat
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012002711v1     332833 28 +    766320 TAAGG--aaaaaaagaaataaaacaagaat
i cerAty1.NW_012002711v1   C 0 I 3
s manLeu1.NW_012099655v1     304058 28 -    352859 taagg--aaaaaaagaaataaaacaagaat
i manLeu1.NW_012099655v1   C 0 I 2
s colAng1.NW_012115566v1    2407856 30 -   3067355 taaggaaaaaaaaagaaataaaacaagaat
i colAng1.NW_012115566v1   C 0 I 3
s otoGar3.GL873742          2081842 16 -   2232465 TAAGA--AAAAAGAAAAA------------
i otoGar3.GL873742         T 5150 C 0
s dasNov3.JH569098           148215 25 -    254539 -AAGG--GAAGAAAATAGGAAGAATAGG--
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57651485 31295 -  94987271 I
e proCoq1.NW_012152574v1     402905 9569 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e chlSab2.chr17            28798646 680 -  71996105 T

a score=934447.000000
s hg38.chr6_GL000254v2_alt   680060 205 +   4827813 gaaaaaaacaaaTGAAACTTCACACAGGAATTCCCCAAGGCCACTGATTCATATTACAGGTGTGGAAAGGCATCCTGCTAATTCCTAAA---ATCTTTCTCAACA-CCAGGGGACACTCTCCCTTTGGATTTCTATGTCTAGAGACCTGTGGCTCATTAAAAGGCAGACTGATTTTTCAGAAAGA--GAGAAAGAGGTTTTTAAAGATGAG---
s panTro5.chr6             29653496 205 + 175400573 GAAAAAAACAAATGAAACTTCACACAGGAATTCCCCAAGGCCACTGATTCATATTACAGGTGTGGAAAGGCATCCTGCTAATTCTTACA---ATCTTTCTCAACA-CCAGGGGACACTCTCCCTTTGGATTTCTATGTCTAGAGACCTGTGGCTCATTAAAAGGCAGACTGATTTTTCAGAAAGA--GAGAAAGAGGTTTTTAAAGATGAA---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29891727 205 + 173848474 GAAAAAAACAAATGAAACTTCACACAGGAATTCCCCAAGGCCACTGATTCATATTACAGGTGTGGAAAGGCATCCTGCTAATTCTTACA---ATCTTTCTCAACA-CCAGGGGACACTCTCCCTTTGGATTTCTATGTCTAGAGACCTGTGGCTCATTAAAAGGCAGACTGATTTTTCAGAAAGA--GAGAAAGACGTTTTTAAAGATGAG---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5694577 205 +   6154872 GAAAAAAACAAATGAAACTTCACACAGGAATTCCCCAAGGCCACTGATTCATATTACAGGTGTGGAAAGGCATCCTGCTAATTCTTACA---ATCTTTCTCAGCA-CCAGGGGACACTCTCCCTTTGGATTTCTATGTCTAGAGACCTGTGGCTCATTAAAAGGCAGGCTGATTTTTCAGAAAGA--GAGAAAGAGGTTTTTAAAGATGAG---
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29919824 200 + 172585720 aaaaaaaaaaaaaGGAACTTCACACAGGAATTCCCCAAGGCCGCTGATTCATATTGTAGGTGTGGAAAGGCATCCTGCTAATTCTTACC---ATCTTTCTCAACA-CCAGGGGACACTCTCCCTTTGGATTTCTATGTCTAGAGACCTGTGGCTCATTAAAAGGCAGGTTGATTTTC-----AGA--GAGAAAGAGGTTTTTAAAGATGAG---
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29583464 200 - 170955103 taaaaaaaaaaaaGGAACTTCAGACAGGAATTCCCCAAGGCCGCTGATTCATATTGTAGGTGTGGAAAGGCATCCTGCTAATTCTTACC---ATCTTTCTCAACA-CCAGGGGACACTCTCCCTTTGGATTTCTATGTCTAGAGACCTGTGGCTCATTAAAAGGCAGGTTGATTTTC-----AGA--GAGAAAGAGGTTTTTAAAGATGAG---
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2568676 200 -   2996164 aaaaaaaaaaaaaGGAACTTCACACAGGAATTCCCCAAGGCTGCTGATTCATATTGTAGGTGTGGAAAGGCATCCTGCTAATTCTTACA---ATCTTTCTCAACA-CCAGGGGACACTCTCCCTTTGGATTTCTATGTCTAGAGACCTGTGGCTCATTAAAAGGCAGGTTGATTTTC-----AGA--GAGAAAGAGGTTTTTAAAGATGAG---
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1     332864 200 +    766320 aaaaaaaaaaaaaGGAACTTCACACAGGAATTCCCCAAGGCTGCTGATTCATATTGTAGGTGTGGAAAGGCATCCTGCTAATTCTCACA---ATCTTTCTCAACA-CCAGGGGACACTCTCCCTTTGGATTTCTATGTCTAGAGACCTGTGGCTCATTAAAAGGCAGGTTGATTTTC-----AGA--GAGAAAGAGGTTTTTAAAGATGAG---
i cerAty1.NW_012002711v1   I 3 C 0
s manLeu1.NW_012099655v1     304088 191 -    352859 aaaaaaaaaaaaaGGAACTTCACACAGGAATTCCCCAAGGCTGCTGATTCATATTGTAGGTGTGGAAAGGCATCCTGCTA------------ATCTTTCTCAACA-CCAGGGGACACTCTCCCTTTGGATTTCTATGTCTAGAGACCTGTGGCTCATTAAAAGGCAGGTTGATTTTC-----AGA--GAGAAAGAGGTTTTTAAAGATGAG---
i manLeu1.NW_012099655v1   I 2 C 0
s colAng1.NW_012115566v1    2407889 204 -   3067355 aaaaaaaaaaaaTGGAACTTCACACAGGAATTCCCCAAGGACACTGATTCATATTGTAGGTGTGGAAAGGCATCCTGCTAATTCTTACA---ATCTTTCTCAACA-CCAGGGGACACTCTCCCTTTGGATTTCTATGTCTAGAGACCTGTGGCTCATTAAAAGGCAGGTTGATTTTC-AGAAAGA--GAGAAAGAGGTTTTTAAAGATGAG---
i colAng1.NW_012115566v1   I 3 C 0
s otoGar3.GL873742          2081858 204 -   2232465 GCAATGAAAAACTGCAACTCCACATGGAAATTCCCTGAAGCTACTCCCTTATATGGCAGATGTAGAACGGTAG-CTGTTTATTTTTACAGTTATCTTTCTCAGCA-CCAAGGGACATTCTCTCTTTGGAATT-TGTGTCCAG-GATCTGTGGATCATTAAAAGCTCAGCAGAATTTC-AAAAGGG--GAGGAAGAGATTTGTGAGGATAAA---
i otoGar3.GL873742         C 0 I 3
s mm10.chr17               57682780 190 -  94987271 GGGAAAAACACAAGGAG---CACAGAGGAATTGTGCATGCACATTTCCCC-TATGGCAGGTGTGAAAAA-------ATTAATTTTCTCATCTATTCTGCTCAGC--CTGCGGGACAAGCTCCCTTGGGACTTTTATGTCTAGAGCTCAGT--CTTCTTAGAGTGCTTGCAGAATGTC-----AGGATGGTAGAGAGGTGTCGATAGATGA----
i mm10.chr17               I 31295 C 0
s dasNov3.JH569098           148240 193 -    254539 GAAAAGGAGAA--------------AGAAATTCCCCAACGAGGCCGCCTCATCTTCTAGGTTCTGAGAA-TATCCTATTTATTCTTAAAAC-ATTCTTCCCAGCACCCAGGGGACACAGTCTCTCAGGATGTTTATATCTAGAGATCTGGGGTTCATAAAAAAGGAGTTAGATATCC--GGAAAG--GAGAGAGAAGTTTTGAAA-ATGAAGAA
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     402905 9569 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e chlSab2.chr17            28798646 680 -  71996105 T

a score=1005490.000000
s hg38.chr6_GL000254v2_alt   680265 181 +   4827813 TTTATGCTGCAATCC-------CAACATGAACTATTACTTCAAATATGTTTTAACTTTTATAATCACTGGGAATAT------AAACATGAATAGCTTCCTTAACTGTGAATCAGAACACTCAATCAGGTAAGAGAATGAACTAGGAGACAGGCTGTGAAGTTACACATAATCTCAATATGTTAATGAATGATCT
s panTro5.chr6             29653701 181 + 175400573 TTTATGCTACAATCC-------CAACATGAACTATTACTTCAAATATGTTTTAACTTTTATAATCACTGGGAATAT------AAACATGGATAGCTTCCTTAACTGTGAATCAGAACAATCAATCAGGTAAGAGAATGAACTAGGAGACAGGCTGTGAAGTTACACATAATCTCAATATGTTAATGAATGATCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29891932 181 + 173848474 TTTATGCTGCAATCC-------CAACATGAACTATTACTTCAAATATGTTTTAACTTTTATAATCACTGGGAATAT------AAACATGAATAGCTTCCTTAACTGTGAATCAGAACAATCAATCAGGTAAGAGAATGAACTAGGAGACAGGCTGTGAAGTTACACATAATCTCAATATGTTAATGAATGATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5694782 181 +   6154872 TTTATGCTGCAATCC-------CAACATGAACTATTACTTCAAATATGTTTTAACTTTTATAATCACTGGGAATAT------AAACATGAATAGCTTCCTTAACTGTGAATCAGAACAATCAATCAGGTAAGAGAATGAACTAGGAGACAGGCTGTGAAGTTACACATAATCTCAATATGTTAATGAATGATCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29920024 179 + 172585720 TTTATGCTGCAATCC-------CAACATGAACTATTGCTTCAAATACGTTTTAACTTTTATAATCACTGGGAATAT------AAACAAGAATAGCCTCCTTGACTGTGAATCAGAACAATCAATCAGGTAAGAGAATGAACT--GAGACAGGCTGCGAAATTGCACATAATCTCAATATGTTAATGAATGATCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29583664 179 - 170955103 TTTATGCTGCAATCC-------CAACATGAACTATTGCTTCAAATACGTTTTAACTTTTATAATCACTGGGAATAT------AAACAAGAATAGCCTCCTTGACTGTGAATCAGAACAATCAATCAGGTAAGAGAATGAACT--GAGACAGGCTGCGAAATTGCACATAATCTCAATATGTTAATGAATGATCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2568876 179 -   2996164 TTTATGCTGCAATCC-------CAGCATGAACTATTGCTTCAAATACGTTTTAACTTTTATAATCACTGGGAATAT------AAACAAGAATAGCCTCCTTGACTGTGAATCAGAACAATCAATCAGGTAAGAGAATGAACT--GAGACAGGCTGCGAAGTTGCACATAATCTCAATATGTTAATGAATGATCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     333064 179 +    766320 TTTATGCTGCAATCC-------CAGCATGAACTATTGCTTCAAATACGTTTTAACTTTTATAATCACTGGGAATAT------AAACAAGAATAGCCTCCTTGACTGTGAATCAGAACAATCAATCAGGTAAGAGAATGAACT--GAGACAGGCTGCGAAGTTGCACATAATCTCAATATGTTAATGAATGATCT
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     304279 179 -    352859 TTTATGCTGCAATCC-------CAGCATGAACTATTGCTTCAAATACGTTTTAACTTTTATAATCACTGGGAATAT------AAACAAGAATAGCCTCCTTGACTGTGAATCAGAACAATCAATCAGGTAAGAGAATGAACT--GAGACAGGCTGCGAAGTTGCACATAATCTCAATATGTTAATGAATGATCT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2408093 168 -   3067355 TTTATGCTGCAATTC-------CAACATGAAC-------------ACGTTTTAACTTTTATAATCACTGGGAATAT------AAACACGAATAGCTTCCTTAACTGTGAATCAGAACAATCAATCAGGTAAGAGAATGAACTAGGAGACAGGCTGCGAAGTTGCACATAATCTCAATATGTTAATGAGTGATCT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     412474 181 +    730504 TTTATGCTGCAATCA-------TAACATGAGCCATCACTTCATATATTTTTCAGCTTTTATAGTCACTGGGAATAT------AAACTTGAAAAGCTTTATTACCTGTGAATCAGAACATTCTATCAGGTAAGAGGATGAAATAGGACGCAGGCTGGGAAGTTGCCCATATTTTCAATGTGTTAATGAGTGATCT
i proCoq1.NW_012152574v1   I 9569 I 17
s otoGar3.GL873742          2082065 181 -   2232465 TTTATGCTGCAATCT-------CAACATGAACCATCACTTCAAGAATTTTTCAGCTTTTATAATCACTGGAAATGT------GAACTTGGAAAGCTTTCTATCCTGTGGATCAGAACACTCAATCAGGTAAGAGGATGAAATAGGACACAGGCTGAGTAGCTGTGCTTGTTTTCAACATGTTAATGCATGATCT
i otoGar3.GL873742         I 3 C 0
s mm10.chr17               57682970 152 -  94987271 ---AGACTGTAAGCCAGATATACAACATGAACTATCACTTCAAATATTTCCAAACTCGTACAATTTCTGGACATGCTCCTGGAAAAAAAAAATGCTTTT---------------AACAGTCAGTCAGGTAAGAGAGTGAATTAGGA---------TTAAAATGCCCCGATCTTTAGTCT---------------
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           148433 177 -    254539 ATTATGCTGCAA-CC-------CAACCTGAATTACCACGTGAAAAATGTTTTCCTATCTATAGTCGCTGATAGTGT------AAACCTGAAAACATTTCTTGCCTGGAAGTCTGAATGGTCAACTAGGTAAGA--ATGAAATTGAACACAGCCTAGGAAGGTGGCTGTATAAATTATCTG-TAATGCATTATCT
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e chlSab2.chr17            28798646 680 -  71996105 T

a score=68463.000000
s hg38.chr6_GL000254v2_alt   680446 15 +   4827813 ATCTACTTGCTAGTA
s panTro5.chr6             29653882 15 + 175400573 ATCTACTTGCTAGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29892113 15 + 173848474 ATCTGCTTGCTAGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5694963 15 +   6154872 ATCTACTTGCTAGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29920203 15 + 172585720 AGCTACTTGCTAGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29583843 15 - 170955103 AGCTACTTGCTAGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2569055 15 -   2996164 AGCTACTTGCTAGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     333243 15 +    766320 AGCTACTTGCTAGTA
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     304458 15 -    352859 AGCTACTTGCTAGTA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2408261 15 -   3067355 AGCTACTTGCTAGAA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2082246 15 -   2232465 ATCTATATACCAATA
i otoGar3.GL873742         C 0 I 6
s mm10.chr17               57683122  7 -  94987271 --------GTCTGTA
i mm10.chr17               C 0 I 3
s dasNov3.JH569098           148610 15 -    254539 GTCTTCCTGCTAGTA
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     412655 17 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e chlSab2.chr17            28798646 680 -  71996105 T

a score=2789482.000000
s hg38.chr6_GL000254v2_alt   680461 556 +   4827813 ------TTAAACACC------CAGTATCTAGATCTCATTTTCTATCTAATGGTGGACTCCTCATTGTGTTTGTGAGATATGAAGGCCC-TTGACTTACCATGT-TTTTATTGCCATACCTTGTTCTCAATTCAACA-TATCTAGTTCTC----TAGACATTATCCAAAGCAAACATGTGATTTCTAAATGGTGAAATTTCAGTGAAGGA-AACGATTTAC-----TACAGACCACTCTGACTGCTAATTTTC-TCAGAAGCTAGGAATATATGTTTTACCATATGGATTTT--TGGGACAATTTTGTTTTCTGGGTCCAAGAACC-AAAAATTATATTTGAAATATAATTTGTATTTTAAACAGGAG----TGGT--AA--TTTTTAAATATACAAAATATACATGGTCATTCAAGAAAGTTATTGTGAATTATTTGAAGGCAGTCC-------------TTCATGGAGGTATAGTAAAAGTTAGATTGTTTTTCAAAACTTCTTCCCAGCTATGAAGCCAAAAAACCCATGGGCTCTC---TAGAAGTGTTCCCTTGTTCATTA-----TTTTTTTTT-ACCCTAGTCAC-ATCAAATTATATTCTTTTCTCCTC
s panTro5.chr6             29653897 557 + 175400573 ------TTAAACACC------CAGTATCTAGATCTCATTTTCTATCTAATGGTGGACTCCTCATTGTGTTTGTGAGATATGAAGGCCC-TTGACTTACCACAT-TTTTATTGCCATACCTTGTTCTCAGTTCAACA-TACCTAGTTCTC----TAGACATTATCCAAAGCAAACATGTGATTTCTAAATGGTGAAATTTCAGTGAAGGA-AACGATTTAC-----TACAGACCACTCTGATTGCTAATTTTC-TCAGAAGCTAGGAATATATGTTTTACCATATGGATTTT--TGGGACAATTTTGTTTTCTGGGTCCAAGAACC-AAAAATTATATTTGAAATATAATTTGTATTTTAAACAGGAG----TGGT--AA--TTTTTAAATATACAAAATATACATGGTCATTCAAGAAAGTTATTATGAATTATTTGAAGGCAGTCC-------------TTCATGGAGGTATAGTAAAAGTTAGATTGTTTTTCAAAATTTCTTCCCAGCTATGAAGCCAAAAAACCCATGGGCTCTC---TAGAAGTGTTCCCTTATTCATTA-----TTTTTTTTTTACTCTAGTCAC-ACCAAATTATATTCTTCTCTCCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29892128 556 + 173848474 ------TTAAACACC------CAGTATCTAGATCTCATTTTCTATCTAATGGTGGACTCCTCATTGTGTTTGTGAGATATGAAGGCCC-TTGACTTACCACGT-TTTTATTGCCATACCTTGTTCTCAGTTCAACA-TACCTAGTTCTC----TAGACATTATTCAAAGCAAACATGTGATTTCTAAATGGTGAAATTTCAGTGAAGGA-AACGATTTAC-----TACAGACCACTCTGATTGCTAATTTTC-TCAGAAGCTAGGAATATATGTTTTACCATATGGATTTT--TGGGACAATTTTGTTTTCTGGTTCCAAGAACC-AAAAATTATATTTGAAATATAATTTGTATTTTAAACAGGAG----TGGT--AA--TTTTTAAATATACAAAATATACATGGTCATTCAAGAAAGTTATTGTGAATTATTTGAAGGCAGTCC-------------TTCATGGAGGTATAGTAAAAGTTAGATTGTTTTTCAAAATTTCTTCCCAGCTATGAAGCCAAAAATCCCATGGGCTCTC---TAGAAGTGTTCCCTTATTCATTA-----TTTTTTTTT-ACTCTAGTCAC-ATCAAATTATATTCTTCTCTCCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5694978 555 +   6154872 ------TTAAACACC------CAGTATCTAGATCTCATTTTCTATCTAATGGTGGACTCCTCATTGTGTTTGTGAGATATGAAGGCCC-TTGACTTACCATGT-TTTTATTGCCATACCTTGTTCTCAATTCAACA-TATCTAGTTCTC----TAGACATTATCCAAAGCAAACATGTGATTTCTAAATGGTGAAATTTCAGTGAAGGA-AACGATTTAC-----TACAGACCACTCTGATTGCTAATTTTC-TCAGAAGCTGGGAATATATGTTTTACCATATGGATTTT--TGGGACAATTTTGTTTTCTGCGTCCAAGAACC-AAAAATTATATTTGAAATATAATTTGTATTTTAAACAGGAG----TGGT--AA--TTTTTAAATATACAAAATATACATGGTCATTCAAGAAAGTTATTATGAATTATTTGAAGGCAGTCC-------------TTCATGGAGGTATAGTAAAAGTTAGATTGTTTTTCAAAATTTCTTCCCAGCTATGAAGCCAAAAAACCCATGGGCTCTC---TAGAAGTGTTCCCTTGTTCATTA-----TTTTTTTT--ACTCTAGTCAC-ATCAAATTATATTCTTCTCTCCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29920218 553 + 172585720 ------TTAAACACC------CGGTATCTAGATCTCATTTTCTATCTAATGGTGTACTCTTCATTGTG-AGGAGAAATATGAAGATCC-TTGACTTACCCCAT-TTTTACTGCCATATCTTATTCTCAATTCGACA-TATCTAGTTCTC----TAGACATTATCCAAAGCAAACATGTAATTTCTAAACGGTGAAATTTCAGTGAAGCA-AATGATTTAC-----TACAAACCACTCTGATGGCTAATTTTC-TTAGAAGCTAGGAATATATGTTTTACCATATGGATTTT--TGGGACAATTTTGTTTTCTGGGTCCAAGAACC-AAAAATTATATTTGAAATATAATTTGTATTTTAAACAGGTG----TGGT--AA-TTTTTTAAATACACAAAATATACATGGTCATTCAAGAAAGTTAC-ATGAATTATTTGAAGGCAGTCC-------------TTCATGTACGTATAGTAAAAGTTAGATT-TTTTTCAAAATTTCTTCCCAGCTATGAAGCCAAAAAACCCAT-GGCTCTT---TAGAAGTGTTCCCTTGTTCATTA----TTTTTTTTT--ACTGTAGTCAC-ATCAAATTATACTCTTCTCTCCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29583858 555 - 170955103 ------TTAAACACC------CGGTATCTAGATCTCATTTTCTATCTAATGGTGTACTCTTCATTGTG-AGGAGAAATATGAAGATCC-TTGACTTACCCCAT-TTTTACTGCCATATCTTATTCTCAATTCGACA-TATCTAGTTCTC----TAGACATTATCCAAAGCAAACATGTAATTTCTAAACGGTGAAATTTCAGTGAAGCA-AATGATTTAC-----TACAAACCACTCTGACGGCTAATTTTC-TTAGAAGCTAGGAATATATGTTTTACCATATGGATTTT--TGGGACAATTTTGTTTTCTGGGTCCAAGAACC-AAAAATTATATTTGAAATATAATTTGTATTTTAAACAGGAG----TGGT--AA-TTTTTTAAATACACAAAATATACATGGTCATTCAAGAAAGTTAC-ATGAATTATTTGAAGGCAGTCC-------------TTCATGTACGTATAGTAAAAGTTAGATTGTTTTTCAAAATTTCTTCCCAGCTATGAAGCCAAAAAACCCAT-GGCTCTC---TAGAAGTGTTCCCTTGTTCATTAT---TTTTTTTTT--ACTGTAGTCGC-ATCAAATTATATTCTTCTCTCCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2569070 554 -   2996164 ------TTAAACACC------CGGTATCTAGATCTCATTTTCTATTTAATGGTGTACTGCTCATTGGG-AGGAGAAATATGAAGGCCC-TTGACTTACCACAT-TTTTACTGCCATATCTTATTCTCAGTTCGACA-TATCTAGTTCTC----TAGACATTATACAAAGCAAACATGTAATTTCTAAATGGTGAAATTTCAGTGAAGCA-AACGATTTAC-----TACAAACCACTCTGACTGCTAATTTTC-TTAGAAGCTGGGAATATATGTTTTACCATATGGGTTTT--TGGGACAATTTTGTTTTCTGGGTCCAAGAACC-AAAAATTACATTTGAAATATAATTTGTATTTTAAACAGGAG----TGGT--AA-TTTTTTAAATACACAAAATATACCTGGTCATTCAAGAAAGTTACTATAAATTATTTGAAGGCAGTCC-------------TTCATGGAGGTATAGTAAAAGTTAGATGGTTTTTCAAAATTTCTTCCCAGCTATGAAGCCAAAAAACCCAT-GGCTCTC---TAGAAGTGTTCTGTTGTTCATTA-----TTTTTTTT--ACTGTAGTCAC-ATCAAATTATATTCTTCTCTCCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     333258 554 +    766320 ------TTAAACACC------CGGTATCTAGATCTCATTTTCTATTTAATGGTATACTGTTCATTGTG-AGGAGAAATATGAAGGCCC-TTGACTTACCACAT-TTTTACTGCCATATCTTATTCTCAATTCGACA-TATCTAGTTCTC----TAGACATTATACAAAGCAAACATGTAATTTCTAAATGGTGAAATTTCAGTGAAGAA-AACGATTTAC-----TACAAACCACTCTGACTGCTAATTTTC-TTAGAAGCTGGGAATATATGTTTTACTATATGGGTTTT--TGGGACAATTTTGTTTTCTGGGTCCAAGAACC-AAAAATTACATTTGAAATATAATTTGTATTTTAAACAGGAG----TGGT--AA-TTTTTTAAATACACAAAATATACCTGATCACTCAAGAAAGTTACTATAAATTATTTGAAGGCAGTCC-------------TTCATGGAGGTATAGTAAAAGTTAGATGGTTTTTCAAAATTTCTTCCCAGCCATGAAGCCAAAAAACCCAT-GGCTCTC---TAGAAGTGTTCTGTTGATCATTA-----TTTTTTTT--ACTGTAGTCAC-ATCAAATTATATTCTTCTCTCCTC
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     304473 553 -    352859 ------TTAAACACC------CGGTATCTAGATCTCATTTTCTATTTAATGGTGTACTGCTCATTGTG-AGGAGAAATATGAAGGCCC-TTGACTTACCACAT-TTTTACTGCCATATCTTATTCTCAATTCGACA-TATCTAGTTCTC----TAGACATTATACAAAGCAAACATGTAATTTCTAAATGGTGAAATTTCAGTGAAGAA-AACGATTTAC-----TACAAACCACTCTGACTGCTAATTTTC-TTAGAAGCTGGGAATATATGTTTTACCATATGGATTTT--TGGGACAATTTTGTTTTCTGGGTCCAAGAACC-AAAAATTATATTTGAAATATAATTTGTATTTTAAACGGGAG----TGGT--AA-TTTTTTAAATACACAAAATATACATGGTCATTCAAGAAAGTTAC-ATGAATTATTTGAAGGCAGTCC-------------TTCATGTACGTATAGTAAAAGTTAGATTGTTTTTCAAAATTTCTTCCCAGCTATGAAGCCAAAAATCCCAT-GGCTCTC---TAGAAGTGTTCCCTTGTTCATTA-----TTTTTTTT--ACTGTAGTCAC-ATCAAATTATATTCTTCTCTCCTC
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2408276 554 -   3067355 ------TAAAACACC------CGGTATCTAGATCTCATTTTCTATCTAATGGAGTACTCCTCATTGTG-AGGAGAAATATGAAGGCCC-TTGAGTTACCACAT-TTTTACTGCCATATCTAATTCTCAATTTGACA-TATCTAGTTCTC----TAGACATTATCCAAAGCAAACATGTAATTTCTAAATGGTGAAATTTCAGTGAAGCA-AACGATTTAC-----TACAAACCACTCTGACTGCTAATATTC-TTAGAAGCTAGGAATATATGTTTTACCATATGGGTTTT--TGGAACAATTTTGTTTTCGGGGTCCAAGAACC-AAAAATTATATTTGAAATATAATTTGTATTTTAAACAGGAG----TGGT--AA-TTTTTTAAATACACAAAATATACATGGTCATTCAAGAAAGTTACCATGAATTATTTGAAGGCAGTCC-------------TTCATGGAGGTATAGTAAAAGTTAGATGGTTTTTCAAAATTTCTTCCCAGCTATGAAGCCAAAAAACCCAT-GGCTCTC---TAGAAGTGTTCCCTTGTTCATTA-----TTTTTTTT--ACTCTAGTCAC-ATCAAATTATATTCTTCTCTCCTC
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     412672 560 +    730504 ------TTAAATGTC------CGGAATTTAGAGCTTGTTTCCTATCTAATGATGGACTCCTCACTGTGTTTGTGGAACACAAAGACAC-TTTACCTCTTGTAT-TTTTATTGTCATATCTTATTCTCAATTTAACATTGACTGGTTTTC----TAGATATACTTCAAAGCAAATCTGTAATCTCTAAGTATTGGAATTGCAGTGAAGAA-AATCATTTAC-----TAAAGACCAGTGTGACTGATAATTTCCTTTAAAAGTTAGGAAAATATATTTTCACATATGGGTTTT--TGATATAACTTTGTTTTCTGGGTCAGAGAACCAAAAAATTATATTTGATATATTATTTGTATTTTAAACAGGAA----TGGT--AATTTTTTTAAATATGCAAAATATACATGGCCATCAAAGAATGCTA-ATTTAATTATTTCATGGCTGTCC-------------TTCATAGAAGTATAGTAGAGGTTAGGTAATTTATCAAAATTT-TTTCCAGCTATGGAGCCAGTGGTCCTATGGGCTCTA---TGGAAGTGTTCCCTAGTTCATTAA---TTTTTTTTT--ACTCTAGTGAAAATCAAATTATTTTCTTTT-TCCTC
i proCoq1.NW_012152574v1   I 17 I 16
s otoGar3.GL873742          2082267 572 -   2232465 ------TTAAATGCC------CCAAATTCAAAGCTTACTTCCTATCTCATGATGGTCTGCTCATTGTGTTTATGGAATTTGAAGCCGC-TTTACCTGTTATAT-TTTTATTCTCATATCTTATTGTCAATTAGACAATATCTTAGTGTCAATTTTGACACTCTTCAAAACACATCTGTAATCTCTAAATATTGAAATTGCAGTGAAGAA-AATCATTTAC-----TACAGTTTAGTTTG-CTAACTATCTTC----AAAGTTAACAGAACATATTTTCCCATATGGGCTTT--TGATATAACTT--TTTTCTGTGTCAGAAAACC-AAAAATCATATTTGGCATATTATTTGTATTTTAAACAGAAA----TAGT--AA-TTTTTTAAATACACAAAATATACAAGGCCATCAAAGAAAACTATTTTTAATTATCTGATGGCTATCCTTTATGGAAATGATTTATGGAAGTGTAGCAAAGATTAGATAATTTTTCAAAATAT-TTGCCAGCTATAGAGCCAAAACTCCCAAGGGATCTC---CAGAACTGTTCCCTAGCTCATTAATTTTTTTTTTTT--ACTCTAGTCACAATCTAATTATTTTCTTGT-TCCTC
i otoGar3.GL873742         I 6 I 1
s mm10.chr17               57683132 509 -  94987271 ------TTAAACACCAATGGGCAGGGTTCAGG-CTGGTTTCCTTTCTAGTGATGGACTCCTCACTCTATATGCAGATCAGGAAGCTTCTTTGGCTTCTTTCAT-TCATTGCATTGCACTTGGTTCCTGTTTGGAGAATATTTAGTTTTC--------------------CAAATCTGAAAATTCTAAATATTAAAAGTGTGGTGTACAAGAATGAGTTCTGGTTGTACAGAGAAGTCTAGTTAATAGTTTTCATTAG--TCTGTAAATA---ATTTCCCTAAATTTGTTTTAGTGCTATCATTTTGATTTCTGGCTCAGAGAATG-ATAAATATATTTTGCAATGGGGCTAG-GTTTTAAACATGTATTTCTGTT--GT-GTTTATAATCACATAGAAGAGGCAT----------------TACCATGAATTGTTTGAAAGCAACCC-------------TTGACAGAATTGCAGAAGTGGTAACCCCATTTCTCAGAATGTCTT-CCAGCTATAAAATTTAGAATCCTCA-GGATCCT---TATACGTGTTCCCCAGTTCATTA-----ATTATTTT--CTT-------C-ATCT--------------------
i mm10.chr17               I 3 C 0
s dasNov3.JH569098           148625 506 -    254539 CTAAACTTAAGTGCC------CAGAATTTAAAACTGACTTCCTAAATTAGAGTGGACTTCTCCTTGAGGTTTTAGTTTATAGAGACAC-CTTATTTCTCATGTATATTTTTAAAATATCTCATTCTCAAT--AATA-TGCCTGGTTCTC----TAGACATTCTACAAAACAGGT---------------------------------TA-AATAATTCAG-----TAGAGCAAAGTCTCACTCATAATTTTG-TTTAAAACTTAGGAAGAATTTATTTTCA-ATGGATTTT--TGATACAATTATGTTTTATGAAACAGAGAATC-AAAAACTATATGTGGTTTATCATCTTTATTTTAAACGAGCA----CAGTTAAA-GTCTTCAAATACACAAAATATATATGACTAT--GAAAAATCTTCTCTAAGAGTTCAGAAATCAA-CA-------------TGTATCTAAGTATATTAAAGATTAGATAATTTCTACAAATTTCTT-GCACTTATAAACCCTAGAATCCCGTGGGTTCCCAAAAAAAAGAGCTTCCAAGTTCA------------------------------TTCAAATAACTTTCTTTTCCCCTC
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e chlSab2.chr17            28798646 680 -  71996105 T

a score=140157.000000
s hg38.chr6_GL000254v2_alt   681017 28 +   4827813 AGTGGTTTCT-AAAACCTTGAATGATACT
s panTro5.chr6             29654454 28 + 175400573 AGTGGTTTCT-AAAACCTTGAATGATACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29892684 28 + 173848474 AGTGGTTTCT-AAAACCTTGAATGATACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5695533 28 +   6154872 AGTGGTTTCT-AAAACCTTGAATGATACT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29920771 28 + 172585720 AGTGGTTTCT-AAAACCTTGAATGATACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29584413 28 - 170955103 AGTGGTTTCT-AAAACCTTGAATGATACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2569624 28 -   2996164 AGTGGTTTCT-AAAACCTTGAATGATACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     333812 28 +    766320 AGTGGTTTCT-AAAACCTTGAATGATACT
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     305026 28 -    352859 AGTGGTTTCT-AAAACCTTGAATGATACT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2408830 28 -   3067355 AGTGGTTTCT-AAAACCCTGAATGATACT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2082840 19 -   2232465 AGTGATTTCTCAAAACCTT----------
i otoGar3.GL873742         I 1 C 0
s mm10.chr17               57683641 27 -  94987271 AGTTATCTCT-AAGG-TTTGGGTGATTCC
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           149131 28 -    254539 CATGATTTCT-CGTACCTTGAATGATTCC
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     413232 16 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e chlSab2.chr17            28798646 680 -  71996105 T

a score=1320397.000000
s hg38.chr6_GL000254v2_alt   681045 242 +   4827813 CCTTTTATAGGAAGCACTCCAATGTCAGCATCTCTTTTCA-ATTTCTTTACAGTTCTACTAGCTCTCT-----CAGTGCCTCTCACTTCTGTAAGTTCCCCACAC----ATCCTGACTTCTTCCCTCCCAATATACAAGAGCTAATCCATTACA-GCCTA-ATGAAAAGAACAAAGAAGAAGCTACTTCACAATATTATGTCTGCTTTTATTAGTAAACCTAATGAAGATAATACCAG-TACTTTGCAAATTATG
s panTro5.chr6             29654482 242 + 175400573 CCTTTTATAGGAAGCACTCCAGTGTCAGCATCTCTTTTCA-ATTTCTTTACAGTTCTACTAGCTCTCT-----CAGTGCCTCTCACTTCTGTAAGTTCCCCACAC----ATCCTGACTTCTTCCCTCCCAATATACAAGAGCTAATCCATTACA-GCCTA-ATGAAAAGAACAAAGAAGAAGCTACTTCACAATATTATGTCTGCTTTTATTAGTAAACCTAATGAAGATAATACCAG-TACTTTGCAAATTATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29892712 242 + 173848474 CCTTTTATAGGAAGCACTCCAGTGTCAGCATCTCTTTTCA-ATTTCTTTACAGTTCTACTAGCTCTCT-----CAGTGCCTCTCACTTCTGTAAGTTCCCCACAC----ATCCTGACTTCTTCCCTCCCAATATACAAGAGCTAATCCATTACA-GCCTA-ATGAAAAGAACAAAGAAGAAGCTACTTCACAATATTATGTCTGCTTTTATTAGTAAACCTAATGAAGATAATACCAG-TACTTTGCAAATTATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5695561 242 +   6154872 CCTTTTATAGGAAGCACTCCAATGTCAGCATCTCTTTTCA-ATTTCTTTACAGTTCTACTAGCTCTCT-----CAGTGCCTCTCACTTCTGTAAGTTCCCCACAC----ATCCTGACTTCTTCCCTCCCAATATAAAAGAGCTAATCCATTACA-GCCTA-ATGAAAAGAACAAAGAAGAAGCTACTTCACAATATTATGTCTGCTTTTATTAGTAAACCTAATGAAGATAATACCAG-TACTTTGCAAATTATG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29920799 239 + 172585720 CCTTTTATAGGAAGCACTCCAATGTCAGCATCTC--TTCA-ATTTCTTTACAGTTCTACCAGCTCTCT-----CAGTGTCTCTCACTTCTGTAAGTTCCCCACAC----ATCCT-ACTTCTTCCCTCCCAATATACAAGAGCTAATCCATTACA-GCCTA-ATGAAAAGAACAAAGAAGAAGCTACTTCACAAAATTATGTCTGCTTTTATTAGTAAACTTAGTGAAGATAATGCCAG-TACTTTACAAATTATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29584441 239 - 170955103 CCTTTTATAGGAAGCACTCCAATGTCAGCATCTC--TTCA-ATTTCTTTACAGTTCTACCAGCTCTCT-----CAGTGTCTCTCACTTCTGTAAGTTCCCCACAC----ATCCT-ACTTCTTCCCTCCCAATATACAAGAGCTAATCCATTACA-GCCTA-ATGAAAAGAACAAAGAAGAAGCTACTTCACAAAATTATGTCTGCTTTTATTAGTAAACTTAGTGAAGATAATGCCAG-TACTTTACAAATTATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2569652 239 -   2996164 TCTTTTATAGGAAGCACTACAATGTCAGCATCTC--TTCA-ATTTCTTTACAGTTCTACTAGCTCTCT-----CAGTGTCTCTCACTTCTGTAAGTTCCCCACAC----ATCCT-ACTTCTTCCCTCCCAATATACAAGAGCTAATCCATTACA-GCCTA-ATGAAAAGAACAAAGAAGAAGCTACTTCACAAAATTATGTCTGCTTTCATTAGTAAACTTAGTGAAGATAATGCCAG-TACTTTACAAATTATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     333840 239 +    766320 CCTTTTATAGGAAGCACTACAATGTCAGCATCTC--TTCA-ATTTCTTTACAGTTCTACCAGCTCTCT-----CAGTGTCTCTCACTTCCGTAAGTTCCCCACAC----ATCTT-ACTTCTTCCCTCCCAATATACAAGAGCTAATCCGTTACA-GCCTA-ATGAAAATAACAAAGAAGAAGCTACTTCACAAAATTATGTCTGCTTTTATTAGTAAACTTAGTGAAGATAATGCCAG-TACTTTACAAATTATG
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     305054 239 -    352859 CCTTTTATAGGAAGCACTCCAATGTCAGCATCTC--TTCA-ATTTCTTTACAGTTCTACCAGCTCTCT-----CAGTGTCTCTCACTTCTGTAAGTTCCCCACGC----ATCCT-ACTTCTTCCCTCCCAATATACAAGAGCTAATCCGTTACA-GCCTA-ATGAAAAGAACAAAGAAGAAGCTACTTCACAAAATTATGTCTGCTTTTATTAGTAAACTTAGTGAAGATAATGCCAG-TACTTTACAAATTATG
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2408858 239 -   3067355 CCTTTTATAGGAAGCACTCCAATGTCAGCATCTC--TTCA-ATTTCTTTACAGTCCTACCAGCTCTCT-----CAGTGCCTCTCACTTCTGTAAGTTTCCCACAC----ATCCT-ACTTCTTCCCTCGCAATATACAAAAGCTAATCCATTACA-GCCTA-ATGAAAAGAACAAAGAAGAAGCTACTTCACAAAATTATGTCTGCTTTTATTAGTAAACTTAGTGAAGATAATGCCAG-TACTTTACAAATTATG
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     413248 245 +    730504 CCTTTTATAAAAAGCACCCCAATGTTAGCATCTGCATTCA-ATTTTCTTACAGTTCTTATAGTTTTCC-----CAGTACCTCCCACTTCTGTAAGTTTCCCACAC----ATTCTTGCTTCTTCTCTCTCAATATACAAGATGTAATCCACAACATGTTTACATGAAAGGAAAAAAGAGGAATCTACTTCATAAAATTATATCTGCTTTTATCAGTTTACCTAATGGAGATAATACCAGATACTTTGCACATAATG
i proCoq1.NW_012152574v1   I 16 C 0
s otoGar3.GL873742          2082859 228 -   2232465 TTTTTTAAAAAAAGCACCTCAATGTCATCATCT--------ATATTCTTACAGTTCTCATTGTTT---------------TCCTACTCCTATAAGTTTCCCAAAC----ATTCTTGCTTCTTCTCTCTCAATATTCAAGATATAATTCATAAGACATTTACATGAAAGGAGAAAATAGGGTTATACTTCACAAAGTTATGTCTGCTTTTATCAGTTTATCAAATGGAGATAATGTCAGCTACTTTGTAAATAATG
i otoGar3.GL873742         C 0 I 330
s mm10.chr17               57683668 235 -  94987271 CCCTTTGTGGGACTCATACTAGTGTCAGCCTCTG--TTCA-ACTCCACTGCAGATA-AGGAGTTCTCT-----TGGTGGCTCCAAGCAGCATGGACCCTCCACACAGTTATTTT-GATTCTTCCTTT----TGTAC---AGTGAATCCAGGGCATCTTTA-ATAGAAAGGAACCAGAGGAAGCTACTTCGCAAAACTATGTCTGCTCTGATCAGTGTTATTTAGGAAGGTAATTCAGG-TACTCTCCTAAT-ATA
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           149159 233 -    254539 CTCTTTATAGAAAGCTGCCTAATACCTGCATCTCTATTCAGAATTTCCTGCAGTTTT------TTTCTTACAACAGTTCCTCCCACTGCTCTAAGTTTCTCACAT----ATCATTGCTTCTTCTTTCCC----CAAAAGAGTTCTACATCTAGA-----A-ATAAAAAGGAGAAAGAAGAAGCTACCTCATAAAG-TATGTCTGCTTT-GTGAGTGTACCTACAGGAGGTAATGTCAGGCACTTTGCAATTAAAA
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e chlSab2.chr17            28798646 680 -  71996105 T

a score=48557.000000
s hg38.chr6_GL000254v2_alt   681287 9 +   4827813 GAGAAAAAA
s panTro5.chr6             29654724 9 + 175400573 GAGAAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29892954 9 + 173848474 GAGAAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5695803 9 +   6154872 GAGAAAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29921038 9 + 172585720 GAGAAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29584680 9 - 170955103 GAGAAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2569891 8 -   2996164 GAG-AAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     334079 8 +    766320 GAG-AAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     305293 9 -    352859 GAGAAAAAA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2409097 9 -   3067355 GAGAAAAAA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     413493 9 +    730504 GAGAAAAAA
i proCoq1.NW_012152574v1   C 0 I 324
s mm10.chr17               57683903 9 -  94987271 GAAAAAAAa
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           149392 9 -    254539 GAGTAAAGA
i dasNov3.JH569098         C 0 I 11
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2083087 330 -   2232465 I
e chlSab2.chr17            28798646 680 -  71996105 T

a score=25462.000000
s hg38.chr6_GL000254v2_alt   681296 8 +   4827813 TTTTTCTA
s panTro5.chr6             29654733 8 + 175400573 TTTTTCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29892963 8 + 173848474 TTTTTCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5695812 8 +   6154872 TTTTTCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29921047 8 + 172585720 AATTTCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29584689 8 - 170955103 AATTTCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2569899 8 -   2996164 AATTTCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     334087 8 +    766320 AATTTCTA
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     305302 8 -    352859 AATTTCTA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2409106 8 -   3067355 AATTTCTA
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57683912 2 -  94987271 ------ga
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           149412 8 -    254539 TTTTTCTA
i dasNov3.JH569098         I 11 I 578
e proCoq1.NW_012152574v1     413502 324 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2083087 330 -   2232465 I
e chlSab2.chr17            28798646 680 -  71996105 T

a score=31445.000000
s hg38.chr6_GL000254v2_alt   681304 7 +   4827813 GAAAATG
s panTro5.chr6             29654741 7 + 175400573 GAAAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29892971 7 + 173848474 GAAAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5695820 7 +   6154872 GAAAATG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29921055 7 + 172585720 GAAAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29584697 7 - 170955103 GAAAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2569907 7 -   2996164 GAAAATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     334095 7 +    766320 GAAAATG
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     305310 7 -    352859 GAAAATG
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2409114 7 -   3067355 GAAAATG
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57683914 7 -  94987271 gaagagg
i mm10.chr17               C 0 C 0
e dasNov3.JH569098           149420 578 -    254539 I
e proCoq1.NW_012152574v1     413502 324 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2083087 330 -   2232465 I
e chlSab2.chr17            28798646 680 -  71996105 T

a score=18378.000000
s hg38.chr6_GL000254v2_alt   681311 3 +   4827813 TAA
s panTro5.chr6             29654748 3 + 175400573 TAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29892978 3 + 173848474 TAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5695827 3 +   6154872 TAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29921062 3 + 172585720 TAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29584704 3 - 170955103 TAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2569914 3 -   2996164 TAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     334102 3 +    766320 TAA
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     305317 3 -    352859 TAA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2409121 3 -   3067355 TAA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     413826 3 +    730504 TAA
i proCoq1.NW_012152574v1   I 324 C 0
s mm10.chr17               57683921 2 -  94987271 -ag
i mm10.chr17               C 0 I 1
s dasNov3.JH569098           149998 3 -    254539 TAA
i dasNov3.JH569098         I 578 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2083087 330 -   2232465 I
e chlSab2.chr17            28798646 680 -  71996105 T

a score=131895.000000
s hg38.chr6_GL000254v2_alt   681314 21 +   4827813 TGGATCTAGAAGAGAAGAAGG
s panTro5.chr6             29654751 21 + 175400573 TGGATCTAGAAGAGAAGAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29892981 21 + 173848474 TGGATCTAGAAGAGAAGAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5695830 21 +   6154872 TGGATCTAGAAGAGAAGAAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29921065 21 + 172585720 TGGATCTAGAAGAAAAGAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29584707 21 - 170955103 TGGATCTAGAAGAAAAGAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2569917 21 -   2996164 TGGATCTAGAAGAAAAGTGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     334105 21 +    766320 TGGATCTAGAAGAAAAGAAGG
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     305320 21 -    352859 TGGATCTAGAAGAAAAGAAGG
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2409124 21 -   3067355 TGGATCTAGAAGAAAAGAAGG
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     413829 21 +    730504 TAGATCTAGAAGACAAGAAGG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2083417 21 -   2232465 TGGATATAGAAGAGAAGAGGG
i otoGar3.GL873742         I 330 C 0
s mm10.chr17               57683924 18 -  94987271 -gga--gaggagaggagagga
i mm10.chr17               I 1 I 481
s dasNov3.JH569098           150001 21 -    254539 TGGAAGTACAGGTGAAGAAGG
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e chlSab2.chr17            28798646 680 -  71996105 T

a score=111212.000000
s hg38.chr6_GL000254v2_alt   681335 18 +   4827813 TGAATTTCACTTGAGGTA
s panTro5.chr6             29654772 18 + 175400573 TGAATTTCACTTGAGGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29893002 18 + 173848474 TGAATTTCACTTGAGGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5695851 18 +   6154872 TGAATTTCACTTGAGGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29921086 18 + 172585720 TGAATTTCACTTGAGATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29584728 18 - 170955103 TGAATTTCACTTGAGATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2569938 18 -   2996164 TAAATTTCACTTGAGGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     334126 18 +    766320 TGAATTTCACTTGAGGTA
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     305341 18 -    352859 TGAATTTCACTTGAGATA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2409145 18 -   3067355 TGAATTTCACTTGAGGTA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     413850 18 +    730504 TGAATTTCACTTGAGGCA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2083438 18 -   2232465 TGAATTTCACTGAAGGTA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           150022 18 -    254539 TGCACTTCACTGGAATTA
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57683942 481 -  94987271 I
e canFam3.chr35            26171997 4719 +  26524999 I
e chlSab2.chr17            28798646 680 -  71996105 T

a score=411260.000000
s hg38.chr6_GL000254v2_alt   681353 66 +   4827813 GAATATTCCTTAATATCTGATGAGTGAGTTTATTTCAGGCAAAATAAAA-ACAGAACTTAAGAAAAT
s panTro5.chr6             29654790 66 + 175400573 GAATATTCCTTAATATCTGATGAATGAGTTTATTTCAGGCAAAATAAAA-ACAGAACTTAAGAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29893020 66 + 173848474 GAATATTCCTTAATATCTGATGAATGAGTTTATTTCAGGCAAAATAAAA-ACAGAACTTAAGAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5695869 66 +   6154872 GAATATTCCTTAATATCCGATGAGTGAGTTTATTTCCGGCAAAATAAAA-ACAGAACTTAAGAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29921104 65 + 172585720 GAATATTCCTTAATATCTGATGAGTGAGTTTATTTCAGAC-AAATAAAA-ACAGAACTTAAGAAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29584746 65 - 170955103 GAATATTCCTTAATATCTGATGAGTGAGTTTATTTCAGGC-AAATAAAA-ACAGAACTTAAGAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2569956 65 -   2996164 GAATATTCCTTAATATCTGATGAGTGAGTTTATTTCAGGC-AAATAAAA-ACAGAACTTAAGAAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     334144 65 +    766320 GAATATTCCTTAATATCTGATGAGTGAGTTTATTTCAGGC-AAATAAAA-ACAGAACTTAAGAAAAT
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     305359 65 -    352859 GAATATTCCTTAATATCTGATGAGTGAGTTTATTTCAGGC-AAATAAAA-ACAGAACTTAAGAAAAT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2409163 65 -   3067355 GAATATTCCTTAATATCTGATGAGTGAGTTTATTTCAGGC-AAATAAAA-ACAGAACTTAAGAAAAT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     413868 66 +    730504 GAATGTTTCTTAATATCTGAAGAGTGAGTTTATTTCAGGAAAAATAAAA-ACAGGAGTTAAGAAAAT
i proCoq1.NW_012152574v1   C 0 I 881
s otoGar3.GL873742          2083456 64 -   2232465 CAATATTTCTAAATATCTGAAGAGTGAGTTTATTTCAGGGAAAATAAAA-ACAAGACTTAAGAAA--
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57684423 67 -  94987271 GAAAGTTCTTTAGTATCTGATGAGTGAGCTTATTTTAAGATAAGTGGAATAAGGGACCCAAGAAGCT
i mm10.chr17               I 481 C 0
s dasNov3.JH569098           150040 66 -    254539 GATTATATCTTAATACATGAAGAGTAAGTCTATACCCATCAAACTACAA-ACAGAACCCAAGGAAAC
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e chlSab2.chr17            28798646 680 -  71996105 T

a score=575009.000000
s hg38.chr6_GL000254v2_alt   681419 126 +   4827813 AGATCACAAGAGAAGACA--A--TTTCAAGAAGGCTGA----A-----TATATATTTTGAGGAGAGGTTAGTATTGGTGAAAAAAGAAGAGAAACTACTGAATCTATCAGAGGAAATACTATTCTTATCCAGGGATTCA
s panTro5.chr6             29654856 126 + 175400573 AGATCACAAGAGAAGACA--A--TTTCAAGAAGGCTGA----A-----TATATATTTTGAGGAGAGATTAGTATTGGTGAAAAAAGAAGAGAAACTACTGAATCTATCAGAGGAAAAACTATTCTTATCCAGGGATTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29893086 126 + 173848474 AGATCACAAGAGAAGACA--A--TTTCAAGAAGGCTGA----A-----TATATATTTTGAGGAGAGGTTAGTATTGGTGAAAAAAGAAGAGAAACTACTGAATCTATCAGAGGAAAAACTATTCTTATCCAGGGATTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5695935 126 +   6154872 AGATCACAAGAGGAGACA--A--TTTCAAGAAGGCTGA----A-----TATGTATTTTGAGGAGAGGTTAGTATTGGTGAAAAAAGAAGAGAAACTACTGAATCTATCAGAGGAAAAACTATTCTTATCCAGGGATTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29921169 125 + 172585720 AGATCAC-AGAGAAGATA--A--TTTCAAGAAGGCTGA----A-----TATATATTTAGAGGAGAGGTTAGTATTGGTGAAAAAAGAAGAGAAACTACTGAATCTGTCAGAGGAAAAACTATTCTTATCCAGGGATTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29584811 125 - 170955103 AGATCAC-AGAGAAGATA--A--TTTCAAGAAGGCTGA----A-----TATATATTTAGAGGAGAGGTTAGTATTGGTGAAAAAAGAAGAGAAACTACTGAATCTGTCAGAGGAAAAACTATTCTTATCCAGGGATTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2570021 126 -   2996164 AGATCACAAGAGAAGACA--A--TTTCAAGAAGGCTGA----A-----TATATATTTAGAGGAGAAGTTAGTATTGGTGAAAAAAGAAGAGAAACTACTGAATCTATCAGAGGAAAAACTATTCTTATCCAGGGATTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     334209 126 +    766320 AGATCACAAGAGAAGACA--A--TTTCAAGAAGGCTGA----A-----TATATATTTAGAGGAGAGGTTAGTATTGGTGAAAAAAGAAGAGAAACTACTGAATCTATCAGAGGAAAAACTATTCTTATCCAGGGATTCA
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     305424 125 -    352859 AGATCAC-AGAGAAGACA--A--TTTCAAGAAGGCTAA----A-----TATATTTTTAGAGGAGAGGTTAGTATTGGTGAAAAAAGAAGAGAAACTACTGAATCTATCAGAGGAAAAACTATTCTTATCCAGGGATACA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2409228 126 -   3067355 AGATCACAAGAGAAGACA--A--TTTCAAGAAGGCTGA----A-----TATATATTTAGAGGAGAGGTTAGTACTGGTGAAAAAAGAAGAGAAACTACTGAATCTATCAGAGGAAAAACTATTCTTATCCAGGGATTCA
i colAng1.NW_012115566v1   C 0 M 983
s otoGar3.GL873742          2083520 102 -   2232465 --ATTATAAGAGAAGACAAGA--TTTCAATAAAAATGAAGCCA-----TAAATACTTTAAGGATAGGTTAGTGCTGGTGAAAGAAG----------------------------GGAACTTTTCTTATCAATGGATTCA
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57684490 111 -  94987271 AGACCACAAAAAAAGACAGGA--TTTCAAGTATGCTAA----AGTGAGTATATATC---------AGTTGCTGCTCGTGAAATGAG-GGAGGGACTGC------------AGGGAGAGCTTCTCTGATCCAGGGTCTCT
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           150106 127 -    254539 AGGT-ATAAAAAAAGATA--AGCTTTCACGGGTGTCAA----AGTCT-TAGATACCTCAAGGAGAGGTCAGTGTTGTGTGATCTAAAAGAGGAGCTCTTAAGTCCATT--GAGAAAGGATCTTCTTACCTAAGGATG--
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     413934 881 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e chlSab2.chr17            28798646 680 -  71996105 T

a score=196282.000000
s hg38.chr6_GL000254v2_alt   681545 56 +   4827813 CAGATTTCCTAGGAAAG---AAAGAGTCTAAGATCAACTGGTGAATAAAAGCACAATAA
s panTro5.chr6             29654982 56 + 175400573 CAGATTTCCTAGGAAAG---AAGGAGTCTAAGATCAACTGGTGAATAAAAGCACAATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29893212 56 + 173848474 CAGATTTCCTAGGAAAG---AAGGAGTCTAAGATCAACTGGTGAATAAAAGCACAATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5696061 56 +   6154872 CAGATTTCCTAGGAAAG---AAAGAGTCTAAGATCAACTGGTGAATAAAAGCACAATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29921294 56 + 172585720 TAGATTTCCTAGGAAAG---GAAGAGTCTAAGATCAACAGATAAATAAAAGCACAATAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29584936 56 - 170955103 TAGATTTCCTAGGAAAG---GAAGAGTCTAAGATCAACAGATAAATAAAAGCACAATAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2570147 56 -   2996164 TAGATTTCCTAGGAAAG---GAAGAGTCTAAGATCAACAGGTAAATAAAAGCACAATAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     334335 56 +    766320 TAGATTTCCTAGGAAAG---GAAGAGTCTAAGATCAACAGGTAAATAAAAGCACAATAA
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     305549 56 -    352859 TAGATTTCCTAGGAAAG---GAAGAGTCTAAGATCAACAGATAAATAAAAGCACAATAA
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2083622 55 -   2232465 TGGATCT----GGAAAGTAAAAAAAGCATTATGTCAACTGGGGGATAAAATTGCAATAA
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57684601 50 -  94987271 GGGATT------GAAAA---ACACACCTCAAGGCATCTAGAAAAACAGAAGCACAAAAA
i mm10.chr17               C 0 T 35415
s dasNov3.JH569098           150233 58 -    254539 CAGGTATCTAAGAAATG-GAAAAGAGTTCCAAGGAAACCAGAGAAGAGCAGTAAAATAC
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     413934 881 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409354 983 -   3067355 M
e chlSab2.chr17            28798646 680 -  71996105 T

a score=1037080.000000
s hg38.chr6_GL000254v2_alt   681601 270 +   4827813 CATTTGCAATG----AAAAAAATAATTTGGGATTCTATTTCAAAAAATGTATAAAGGGTCAGATTATAGGAAGAAACTGAGCTCATCATCAGATATAATAGTGAT-GAAATTTTAAATAT--------TCAGGTT-------AATATGTGATTAATGTGGTC----ATGTTTCTTACCCCAG-TAGGTCACTGCGAC-ATTTC-AGGG-ATGTGGGTCAGGAAGAGATCAGTAAGAGAATATC---TCTAA-TTCA---TTTACATTCTAAAATGAGGAAATGCAATTACTACTACTCTTTCAAG------------
s panTro5.chr6             29655038 270 + 175400573 CATTTGCAATA----AAAAAAATAATTTGGGATTCTATTTCAAAAAAAGTATAAAGGGTCAGATTATAGGAAGAAACTGAGCTCATCATCAGACATAATAGTGAT-GAAATTTTAAATAT--------TCAGGCT-------AATATGTGATTAATGTGGTC----ATGTTTCCTACCCTAG-TAGGTCACTGCGAC-ATTTC-AGGG-ATGTGGGTCAGGAAGAGATCAGTAAGAGAATATC---TCTAA-TTCA---TTTACATTCTAAAATGAAGAAATGCAATTACTACTACTCTTTCAAG------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29893268 270 + 173848474 CATTTGCAATG----AAAAAAATAATTTGGGATTCTATTTCAAAAAAAGTATAAAGGGTCAGATTATAGGAAGAAACTGAGCTCATCATCAGACATAATAGTGAT-GAAATTTTAAATAT--------TCAGGCT-------AATATGTGATTAATGTGGTC----ATGTTTCCTACCCTAG-TAGGTCACTACGAC-ATTTC-AGGG-ATGTGGGTCAGGAAGAGATCAGTAAGAGAATATC---TCTAA-TTCA---TTTACATTCTAAAATGAAGAAATGCAATTACTACTACTCTTTCAAG------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5696117 270 +   6154872 CATTTGCAATG----AAAAAACTAATTTGGGATTCTATTTCAAAAAAAGTATAAAGGGTCAGATTATAGGAAGAAACTGAGCTCATCATCAGATATAATAGTGAT-GAAATTTTAAATAT--------TCAGGCT-------AATATGTGATTAATGTGGTC----ATGTTTCTTACCCGAG-TAGGTCACTACGAC-ATTTC-AGGG-ATGTGGGTCAGGAAGAGATCAGTAAGAGAATATC---TCTAA-TTCA---TTTACCTTCTAAAATGAGGAAATGCAATTACTACTACTCTTTCAAG------------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29921350 270 + 172585720 CATTTGCAATG----AAAAAAGTAATTTGGGATTCTATTTCGAAAATAATATAAAGGGTCAGATTATAGGAAGAAACTGAGCTCATCATCAGATATAATAGTGAT-GAAATTTTAAATAT--------TCAGGCT-------AATATGTGACTAATGTGGTC----ATGTTTCTTACCCCAG-TAGGTCACTACGAC-ATTTC-AGGG-ATGTGGGTCAGGAAGAGATTAGTAAGAGAATATC---TCTAA-TTAA---TTTACATTGTAAAATGAGGAAATGCAATTACTACTACTCTTTCAAG------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29584992 270 - 170955103 CATTTGCAATG----AAAAAAGTAATTTGGGATTCTATTTCGAAAAAAATATAAAGGGTCAGATTATAGGAAGAAACTGAGCTCATCATCAGATATAATAGTGAT-GAAATTTTAAATAT--------TCAGGCT-------AATATGTGACTAATGTGGTC----ATGTTTCTTACCCCAG-TAGGTCACTACAAC-ATTTC-AGGG-ATGTGGGTCAGGAAGAGATCAGTAAGAGAATATC---TCTAA-TTAA---TTTACATTGTAAAATGAGGAAATGCAATTACTACTACTCTTTCAAG------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2570203 270 -   2996164 CATTGGCAATG----AAAAAAGTAATTTGGGATTCTATTTTGAAAAAAATATAACGGGTCAGATTATAGGAAGAAACTGAGCTCATCACCAGATATAATAGTGAT-GAAATTTTAAAAAT--------TCAGGCT-------AATATGTGATTAATGTGGTC----ATGTTTCTTAACCCAG-TAGGTCACTATGAC-ATTTC-AGGG-ATGTGGGTAAGGAAGAGATCAGTAAGAGAATATC---TCTAA-TTCA---TTTACATTCTAAAAGGAGGAAATGCAATTACTACTACTCTTTCAAG------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     334391 270 +    766320 CATTGGCAATG----AGAAAAGTAATTTGGGATTCTATTTTGAAAAAAATATAAAGGGTCAGATTATAGGAAGAAACTGAGCTCATCACCAGATATAATAGTGAT-GAAATTTTAAAAAT--------TCAGGCT-------AATATGTGATTAATGTGGTC----ATGTTTCTTAACCCAG-TAGGTCACTATGAC-ATTTC-AGGG-ATGTGGGTAAGGAAGAGATCAGTAAGAGAATATC---TCTAA-TTCA---TTTACATTCTAAAAGGAGGAAATGCAATTACTACTACTCTTTCAAG------------
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     305605 270 -    352859 CATTTGCAATG----AAAAAAGTAATTTGGGATTCTATTTCGAAAAAAATATAAAGGGTCAGATTATAGGAAGAAACTGAGCTCATCATCAGATATAATAGTGAT-GAAATTTTAAATAT--------TCAGGCT-------AATATGTGACTAATGTGGTC----ATGTTTCTTACCCCAG-TAGGTCACTACGAC-ATTTC-AGGG-ATGTGGGTCAGGAAGAGATCAGTAAGAGAATATC---TCTAA-TTAA---TTTACATTGTAAAATGAGGAAATGCAATTACTACTACTCTTTCAAG------------
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2083677 276 -   2232465 TATTTGTCATA----AAAGAAGTAATTTTGGATCCCATTTTGAAAAGAATATAAAGACTCTGATTATAAGATGAAACTAAGACCATCACCAGATATAGTAGTAAC----ATTTTAGATATACCTTAAATTATGAT-------AATATGTAACTAATGTGGTT----ATGTTTCCTACCCCAA-CAGGGCACCACAGT-GTTTCTAGAA-ATGTGGATCAGGAAGCAATCAGTAAGAGAACATCTAGTCCCA-TTTATACTTTATAAAATAAGAGGAGGAAATGCAATTACTA----TTTTTTA--------------
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57649236 269 -  94987271 TATTTTTCACT----GAAGATGTCACCTGATTTCTTGTTT--GAGAAAATGTTCAAGCTCAAAATATAGTAAGACAATAAGCTAATCATC---TATTACAGCAAT-GAGATTTTCAAAATACC-----TCAAATTGACAAAGAGTGTGTGATT-TTGAGCTCCCCGCTGCCTTTTCATTAAA-TAGGGTCCCTTGAC-TTTAC-TGGGCATGTGGGCCAGGAAGAGATTAATAAAGTAGTATT---GTCAG---CA---TTAATAATCAAAGAACACG--------TGACTACTGCTATTTCAGG------------
i mm10.chr17               T 35415 I 37034
s dasNov3.JH569098           150291 281 -    254539 ------CAATGTCATCAAGAAGTAATTTGGGTGTCCAGTTTGGGGTGA-TCCTAAGGCTCAGATTATATGAAG--ACTAAAGGTACCAACAGATAAGGGAGAGAAAAAAATTCCATATACATC-----TCAGGCT-------AGTATCTGAATAACATGGGC----TCAATTCAGACCCTAGATAAGACTTCATGATAATTCC-AGGG-ATAAGAGTCTGGAAAGGATCAGAAAGAGGTCACC---TCAGAGTCTA---CTTACATTGTAAGATGAAGAAAAGTCATGATGATTA---TTTTAAATCAGTTTTTTTT
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     413934 881 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409354 983 -   3067355 M
e chlSab2.chr17            28798646 680 -  71996105 T

a score=3464.000000
s hg38.chr6_GL000254v2_alt   681871 5 +   4827813 ATTTA
s panTro5.chr6             29655308 5 + 175400573 ATTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29893538 5 + 173848474 ATTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5696387 4 +   6154872 ATTT-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29921620 5 + 172585720 ATTTA
i rheMac8.chr4             C 0 I 5
s macFas5.chr4             29585262 5 - 170955103 ATTTa
i macFas5.chr4             C 0 I 8
s macNem1.NW_012011356v1    2570473 3 -   2996164 ATT--
i macNem1.NW_012011356v1   C 0 I 2
s cerAty1.NW_012002711v1     334661 3 +    766320 ATT--
i cerAty1.NW_012002711v1   C 0 I 1
s manLeu1.NW_012099655v1     305875 5 -    352859 ATTTA
i manLeu1.NW_012099655v1   C 0 I 1194
s mm10.chr17               37361692 3 +  94987271 ATT--
i mm10.chr17               n 37034 C 0
s dasNov3.JH569098           150572 5 -    254539 AGTTA
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     413934 881 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2083953 0 -   2232465 C
e colAng1.NW_012115566v1    2409354 983 -   3067355 M
e chlSab2.chr17            28798646 680 -  71996105 T

a score=464325.000000
s hg38.chr6_GL000254v2_alt   681876 126 +   4827813 AAAAAAAAATCGTGGTTTTGATGCATTGAAACCTGTCT-TTTTATTTAAGTTAACATCCTACTGGTGGTTTCTTACTAGGCCAAG--AGATA--GCTAT-GTGGTATGCTTAAAAAT-TGCCCCCTGTGAGAG
s panTro5.chr6             29655313 126 + 175400573 AAAAAAAAATCGTGGTTTTGATGCATTGAAACCTGTCT-TTTTATTTAAGTTAACATCCTACTGGTGGTTTCTTACTAGGCCAAG--AGATA--GCTAT-GTGGTATGCTTAAAAAT-TGCCCCCTGTGAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29893543 126 + 173848474 AAAAAAAAATCGTGGTTTTGATGCATTGAAACCTGTCT-TTTTATTTAAGTTAACATCCTACTGGTGGTTTCTTACTAGGCCAAG--AGATA--GCTAT-GTGGTATGCTTAAAAAT-TGCCCCCTGTGAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5696391 125 +   6154872 AAAAAAAAATCGTGGTTTTGATGCATTGAAACTTGTCT-TTTTATTTAAGTTAACATCCTACTGGTGGTTTCTTACTAGGCCAAG--AGATA--GCCGT-GTGGTATGCTTAAAAAC-TG-CCCCTGTGAGCG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29921630 124 + 172585720 AAAAAAAAAC--TGGTTTTGATGCATTGAAACCTGTCT-TTTTATTTCAGTTAACATCCTACTGGTGGTTTCTTACTAGGCCAAG--AGATA--GCTAT-GTGATATGCTTAAAAAT-TGTCCCCTGTGAGAG
i rheMac8.chr4             I 5 C 0
s macFas5.chr4             29585275 126 - 170955103 aaaaaaaaaCTGTGGTTTTGATGCATTGAAACCTGTCT-TTTTATTTCAGTTAACATCCTACTGGTGGTTTCTTACTAGGCCAAG--AGATA--GCTAT-GTGATATGCTTAAAAAT-TGTCCCCTGTGAGAG
i macFas5.chr4             I 8 C 0
s macNem1.NW_012011356v1    2570478 126 -   2996164 AAAAAAAAATTGTGGTTTTGATGCATTGAAACCTGTCT-TTTTATTTAAGTTAACATCCTACTGGTGGTTTCTTACTAGGCCAAG--AGATA--GCTAT-GTGGTATGCTTAAAAAT-TGCCCCCTGTGAGAG
i macNem1.NW_012011356v1   I 2 C 0
s cerAty1.NW_012002711v1     334665 126 +    766320 AAAAAAAAATTGTGGTTTTGATGCATTGAAACCTGTCT-TTTTATTTAAGTTAACATCCTACTGGTGGTTTCTTACTAGGCCAAG--AGATA--GCTAT-GTGGTATGCTTAAAAAT-TGCCCCCTGTGAGAG
i cerAty1.NW_012002711v1   I 1 C 0
s manLeu1.NW_012099655v1     307074 126 -    352859 AAAAAAAAATTGTGGTTTTGATGCATTGAAACCTGTCT-TTTTATTTAAGTTAACATCCTACTGGTGGTTTCTTACTAGGCCAAG--AGATA--GCTAT-GTGGTATGCTTAAAAAT-TGCCCCCTGTGAGAG
i manLeu1.NW_012099655v1   I 1194 C 0
s otoGar3.GL873742          2083953 129 -   2232465 AAAAGATTTTTATGCTTATAATGAGTTCATTATTGCTA-TTTTTCTTAAATTAAAATCCTATAGAGGATTTCTTACTAGATGAAG--AGATATTGTCATGGTGGCATATTAAAAAGT-TATACCCTATCAGAG
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               37361695 125 +  94987271 -----AACTCTGTGATTGAAACAAATTCGTCCCTGCCTACTGTCTTCACATTAAAACCCTTCAAGAGTATTCTTACCTTTCAGAGTCTGTCT--GCCTG-GTGAGATATTTTAAAATCTGTTCACTGTTAGAG
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           150577 121 -    254539 ---CAGAGGACACGATTCTGATTACTTCATCCCTGTGC-TTTTCCATAAGCTAAAATCCTTCAGGTGGTGTC-TACTTGGTTTGG--AAGTATTGTAAT-GTAGTACA-TTAAAAAT-CA--CCCTGTTAGAG
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     413934 881 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409354 983 -   3067355 M
e chlSab2.chr17            28798646 680 -  71996105 T

a score=94348.000000
s hg38.chr6_GL000254v2_alt   682002 27 +   4827813 CT-GCTTGGGAAGATGAAAGGAAAGCTG
s panTro5.chr6             29655439 27 + 175400573 CT-GCTTGGGAAGATGAAAGGAAAGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29893669 27 + 173848474 CT-GCTTGGGAAGATGAAAGGAAAGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5696516 27 +   6154872 CT-GCTTGGGAAGATGAAAGGAAAGCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29921754 27 + 172585720 CT-ACTTGGAAAGACAAAAGGAAAGCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29585401 27 - 170955103 CT-ACTTGGAAAGACAAAAGGAAAGCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2570604 27 -   2996164 TC-ACTTGGAAAGACGAAAGGAAAGCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     334791 27 +    766320 TC-ACTTGGAAAGACGAAAGGAAAGCTG
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     307200 27 -    352859 TC-ATTTGGAAAGACGAAAGGAAAGCTG
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2084082 28 -   2232465 CTGACTTGGGTATATTAAAGGAAACTTG
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               37361820 27 +  94987271 AC-AATTAATGAAATGAAAAGAAAGCTG
i mm10.chr17               C 0 n 0
e dasNov3.JH569098           150698  0 -    254539 C
e proCoq1.NW_012152574v1     413934 881 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409354 983 -   3067355 M
e chlSab2.chr17            28798646 680 -  71996105 T

a score=77208.000000
s hg38.chr6_GL000254v2_alt   682029 24 +   4827813 TGACCGAATGAAGATATTCACAGG
s panTro5.chr6             29655466 24 + 175400573 TGACCGAATGAAGATATTCACAgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29893696 24 + 173848474 TGACCGAATGAAGATATTCACAgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5696543 24 +   6154872 TGACCGAATGAAGATATTCACAgg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29921781 24 + 172585720 TAACCGAATGAAGATATTCATGgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29585428 24 - 170955103 TAACCGAATGAAGATATTCATGgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2570631 24 -   2996164 TAACCGAATGAAGATATTCATGgg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     334818 24 +    766320 TAACCGAATGAAGATATTCATGgg
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     307227 24 -    352859 TAACCGAATGAAGATATTCATGgg
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2084110 24 -   2232465 TTTCAGAATGTGCATGTCTTTAGG
i otoGar3.GL873742         C 0 C 0
e mm10.chr17               37361847  0 +  94987271 I
e dasNov3.JH569098           150698  0 -    254539 C
e proCoq1.NW_012152574v1     413934 881 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409354 983 -   3067355 M
e chlSab2.chr17            28798646 680 -  71996105 T

a score=534494.000000
s hg38.chr6_GL000254v2_alt   682053 166 +   4827813 CCCAGAGATgtggctaatgcctgtaatcgcagcactttgggaggccgaggcaggcagataacttgaggtcaggaattcaagaccagcctggcatacacggtgaaaccccatctctattaaaaatacaaaaattagccaggtgtggtggtggactcctgtaatccca
s panTro5.chr6             29655490 166 + 175400573 cccagagaggtggctaatgcctgtaatcgcagcactttgggaggccgaggcaggcagataacttgaggtcaggaattcaagaccagcctggcatacacggtgaaaccccatctctattaaaaatacaaaaattagccaggtgtggtggtggactcctgtaatccca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29893720 166 + 173848474 cccagagaggtggctaatgcctgtaatcgcagcactttgggaggccgaggcaggcagataacttgaggccaggaattcaagaccagcctggcatacacggtgaaaccccatctctaataaaaatacaaaaattagccaggtgtggtggtggactcctgtaatccca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5696567 166 +   6154872 cccagagaggtggctaatgcctgtaatcgcagcactttgggaggccgaggcaggcagataacttgaggtcaggaattcaagaccagcctggcatacacggtgaaaccccatctctattaaaaatacaaaagttacccaggtgtggtggtggactcctgtaatccca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29921805 166 + 172585720 cccagagaggtggctaatgcctgtaatcccagcatgttgggagaccgaggcaggcaaataacttgaggtcaggagttcaagaccagcctggcatacacggtgaaaccccatctctattaaaaatacaaaaattagccaggtgtggtggtggactcctgtaatccca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29585452 166 - 170955103 cccagagaggtggctaatgcctgtaatcccagcatgttgggagactgaggcaggcagataacttgaggtcaggagttcaagaccagcctggcatacacggtgaaaccccatctctattaaaaatacaaaaattagccaggtgtgatggtggacttctgtaatccca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2570655 166 -   2996164 cccagagaggtggctaatgcctgtaatcccagcgtgttgggagaccgaggcaggcagataacttgaggtcaggagttcaagaccagcctggcgtacacggtgaaaccccatctctattaaaaatacaaaaattagccaggtgtggtggtggactcctgtaatccca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     334842 166 +    766320 cccagagaggtggctaatgcctgtaatcccagcgtgttgggagactgaggcaggcagataacttgaggtcaggagttcaagaccagcctggtgtacacggtgaaaccccatctctattaaaaatacaaaaattagccaggtgtggtggtggactcctgtaatccca
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     307251 166 -    352859 cccagagaggtggctaatgcctgtaatcccagcgtgttgggagactgaggcaggcagataacttgaggtcaggagttcaagaccagcctggtgtacacggtgaaactccatctctattaaaaatacaaaaattagccaggtgtggtggtggactcctgtaatccca
i manLeu1.NW_012099655v1   C 0 C 0
e mm10.chr17               37361847   0 +  94987271 I
e dasNov3.JH569098           150698   0 -    254539 C
e proCoq1.NW_012152574v1     413934 881 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2084134   0 -   2232465 C
e colAng1.NW_012115566v1    2409354 983 -   3067355 M
e chlSab2.chr17            28798646 680 -  71996105 T

a score=276330.000000
s hg38.chr6_GL000254v2_alt   682219 91 +   4827813 gttacttgggaagctgaggcgagagactctcttgaacccaggaggcggaggttgcagtgagccaagatcacaccactgcacttcagcctgg
s panTro5.chr6             29655656 91 + 175400573 gttacttgggaagctgaggcgagagagtctcttgaacccgggaggcggaggttgcagtgagccaagatcacaccactgcacttcagcctgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29893886 91 + 173848474 gttacttgggaagctgaggcgagagactctcttgaacctgggaggcagaggttgcagtgagccaagatcacaccactgcactccagcctgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5696733 91 +   6154872 gttacttgggaagctgaggcgagagactctcttgaacccgggaggcggaggttgcagtgagccaagatcacaccactgcactccagcctgg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29921971 91 + 172585720 gttacttgggaggctgaggtgagagaatctcttgaacccaggaggcggagattgcagtgagccaagatcacaccactgtactccagcctgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29585618 91 - 170955103 gttacttgggaggctgaggcgagagaatctcttgaacccaggaggcggaggttgcagtgagccaagatcacaccactgtactccagcctgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2570821 91 -   2996164 gttacttgggaggctgaggcgagagaatctcttgaacctgggaggcggaggttgcagtgagccaagatcataccactgtactccagcctgg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     335008 91 +    766320 gttacttgggaggctgaggcgagagaatctcttgaacctgggaggcggaggttgcagtgagccaagatcataccactgtactccagcctgg
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     307417 91 -    352859 gttacttgggaggctgaggcgagagaatctcttgaacctgggaggcggaggttgcagtgagccaagatcataccactgtactccagcctgg
i manLeu1.NW_012099655v1   C 0 C 0
s dasNov3.JH569098           150698 13 -    254539 GTGACTTAGGAAG------------------------------------------------------------------------------
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               37361847  0 +  94987271 I
e proCoq1.NW_012152574v1     413934 881 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2084134  0 -   2232465 C
e colAng1.NW_012115566v1    2409354 983 -   3067355 M
e chlSab2.chr17            28798646 680 -  71996105 T

a score=121955.000000
s hg38.chr6_GL000254v2_alt   682310 47 +   4827813 gagaaagagtgaga----atctc-----aaaa---aaaaa------gaatgaaaaTATTCACAGC
s panTro5.chr6             29655747 48 + 175400573 gagaaagagtgaga----atctc-----aaaa---aaaaa-----agaatgaaaaTATTCACAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29893977 48 + 173848474 gagaaagagtgaga----atctc-----aaaa---aaaaa-----agaatgaaaaTATTCACAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5696824 53 +   6154872 gagaaagagtgaga----atctc-----aaaa---aaaaaaaaaaagaatgaaaaTATTCACAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29922062 57 + 172585720 gagaaacagcaagactccatctcaaaaaaaaa---aaaaa-----agaatgaaaaTATTCACAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29585709 57 - 170955103 gagaaacagcaagactccatctcaaaaaaaaa---aaaaa-----agaatgaaaaTATTCACAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2570912 52 -   2996164 gagaaacaacaagactccatctc-----aaaa---aaaaa-----agaatgaaaaTATTCACAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     335099 51 +    766320 gagaaacaacaagactccatctc------aaa---aaaaa-----agaatgaaaaTATTCACAGC
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     307508 51 -    352859 gagaaacaacaagactccatctc------aaa---aaaaa-----agaatgaaaaTATTCACAGC
i manLeu1.NW_012099655v1   C 0 C 0
s mm10.chr17               57686539 42 -  94987271 --GAGATAAGGAGA----A---------AATA---GGGTA-----AAAATGGAAATGGTCACACA
i mm10.chr17               I 37034 C 0
s dasNov3.JH569098           150711 34 -    254539 --------------------------GGAAAAGTTAAATA-----AGTATATAGATGTTCACAGC
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     413934 881 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2084134  0 -   2232465 C
e colAng1.NW_012115566v1    2409354 983 -   3067355 M
e chlSab2.chr17            28798646 680 -  71996105 T

a score=410546.000000
s hg38.chr6_GL000254v2_alt   682357 134 +   4827813 CAGAGAAGAC-TGTAGGCTAG--------CAACGTTTTCT-GATTCCTGGGAGAAAGAAATATATTAATGAAAAACATAATAAA----AAAATAGTTGTGTCAGAGATCATAACAGatatat------------atatata----------tatctttaatatttaGCCA
s panTro5.chr6             29655795 134 + 175400573 CAGAGAAGAC-TGTAGGCTAG--------CAACGTTTTCT-GATTCCTGGGAGAAAGAAATATATTAATGAAAAACATAATAAA----AAAATAGTTGTGTCAGAGATCATAACAGATATAT------------ATGTGTA----------TATCTTTAATATTTAGCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29894025 143 + 173848474 CAGAGAAGAC-TGTAGGCTAG--------CAACGTTTTCT-GATTCCTGGGAGAAAGAAATATATTAATGAAAAACATAATAAA----AAAATAGTTGTGTCAGAGATCATAACAGATATAT------------ATATATGTCTCTCTCTCTCTCTTTAATA-TTAGCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5696877 130 +   6154872 CAGGGAAGAC-TGTAGGCTAG--------CAACGTTTTCT-GATTCCTGGGAGAAAGAAATACATTAATGAAAAACATAATAAA----AAA--AGTTGTGTCAGAGATCATAACAGATATAT------------ATATATA------------TCTTTAATATTTAGCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29922119 145 + 172585720 CAGAGAAGAT-TGTAGGCTAGCAGGCTAGCAATGTTTTCT-GATACCTAGGAGAAAGAAATATAGTAATGAAAAACATAATAAA-----AAATAGTTGTGTCAGAGATCATAACAGatatat----atatatgcatatata--------------tttaatatttaGCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29585766 149 - 170955103 CAGAGAAGAT-TGTAGGCTAGCAGGCTAGCAATGTTTTCT-GATACCTAGGAGAAAGAAATATAGTAATGAAAAACATAATAAA-----AAATAGTTGTGTCAGAGATCATAACAGatatatatatatatatgcatatata--------------tttaatatttaGCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2570964 138 -   2996164 CAGAGAAGAT-TGTAGGCTAGCAGGCTAGCAATGTTTTCT-GATACCTGGGAAAAAGAAATATAGTAATGAAAAACATAGTAAA----GAAATAGTTGTGTCAGAGATCATAACAGATATAT------------GTATATA--------------TTTAATATTTAGCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     335150 138 +    766320 CAGAGAAGAT-TGTAGGCTAGCAGGCTAGCAATGTTTTCT-GATACCTGGGAGAAAGAAATATAGTAATGAAAAACATAATAAA----GAAATAGTTGTGTCAGAGATCATAACAGATATAT------------GTATATA--------------TTTAATATTTAGCCA
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     307559 138 -    352859 CAGAGAAGAT-TGTAGGCTAGCAGGCTAACAATGTTTTCT-GATACCTGGGAGAAAGAAATATAGTAATGAAAAACATAACAAA----GAAATAGTTGTGTCAGAGATCATAACAGATATAT------------GTATATA--------------TTTAATATTTAGCCA
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2084134 128 -   2232465 CAGAGAAGAT-TGTGGACTGA--------AAATATGCTCTAAATCCCTGGAAGAAATAAAAATATTAATGACAAACTTAATTTA----AAAATAGTTGAATCAGAGTCCATAACAGACATAA---------------TATA--------------CTTAATATTTAACAG
i otoGar3.GL873742         C 0 I 738
s mm10.chr17               57686581 114 -  94987271 AAGAAAATAT-GGTGGGCTTGTGTTCTATTAAAAGTCACT-------------AACTAAATGTAGTAAATTAGAATAT----------------GTTTGATCACAACCCACAACAGACATGT------------ATTTAAC--------------ATTGTTATTTAACAT
i mm10.chr17               C 0 I 7
s dasNov3.JH569098           150745 119 -    254539 CAGAGATGACAAGAAGACTTA--------CAATATG-----GAACTTTGAGAGAAGGGAA-ATATTAATGAATAGTCTAACAAAGGAAAAAATATCTGTGT----------AACACTCA-AT------------ATGTAGG--------------CATAACATGTAAAAG
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     413934 881 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409354 983 -   3067355 M
e chlSab2.chr17            28798646 680 -  71996105 T

a score=154513.000000
s hg38.chr6_GL000254v2_alt   682491 44 +   4827813 TCTAAAAGCCAAA--AAT--GTAAAACTTGTGAGGTT-GAATCATGCAA
s panTro5.chr6             29655929 44 + 175400573 TCTAAAAGCCAAA--AAT--GTAAAACTTGTGAGGTT-GAATCATGCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29894168 44 + 173848474 TCTAAAAGCCAAA--AAT--GTAAAACTTGTGAGGTT-GAATCATGCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5697007 44 +   6154872 TCTAAAAGCCAAA--AAT--GTAAAACTTGTGAGGTT-GAATCATGCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29922264 44 + 172585720 TCTAAAAACCAAA--AAT--ATAAAACTTGTGAGGTT-GAATCATGCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29585915 44 - 170955103 TCTAAAAACCAAA--AAT--ATAAAACTTGTGAGGTT-GAATCATGCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2571102 44 -   2996164 TCTAAAAACCAAA--AAT--GTAAAACTTGTGAGGTT-GAATCATGCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     335288 44 +    766320 TCTAAAAACCAAA--AAT--GTAAAACTTGTGAGGTT-GAATCATGCAA
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099655v1     307697 44 -    352859 TCTAAAAACCAAA--AAT--GTAAAACTTGTGAGGTT-GAATCATGCAA
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2085000 47 -   2232465 TCTAACAGCCAAACTATT--ATAAAACTTCTGTAGTTGGGATTATGTAA
i otoGar3.GL873742         I 738 C 0
s mm10.chr17               57686702 38 -  94987271 GATAAATACCAGG--A------AAAAATTGGGAAG---GCATCATGAAA
i mm10.chr17               I 7 C 0
s dasNov3.JH569098           150864 37 -    254539 TCTAATGGCCCAT--GATAGGTAAATCATCTCATTTT-AA---------
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     413934 881 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409354 983 -   3067355 M
e chlSab2.chr17            28798646 680 -  71996105 T

a score=95147.000000
s hg38.chr6_GL000254v2_alt   682535 22 +   4827813 AACAACAATA-CTCTCCCTCCAG
s panTro5.chr6             29655973 22 + 175400573 AACAACAATA-CTCTCCCTCCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29894212 22 + 173848474 AACAACAATA-CTCTCCCTCCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5697051 22 +   6154872 AACAACAATA-CTTTCCCTCCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29922308 22 + 172585720 AACAACAATA-CTCTTCCTCCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29585959 22 - 170955103 AACAACAATA-CTCTTCCTCCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2571146 22 -   2996164 AACAACAATA-CTCTTCCTCCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     335332 22 +    766320 AACAACAATA-CTCTTCCTCCAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28797966 22 -  71996105 AACAACAGTA-CTCTCCTTCCAA
i chlSab2.chr17            T 680 C 0
s manLeu1.NW_012099655v1     307741 22 -    352859 AACAACAATA-CTCTTCCTCCAA
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2085047 10 -   2232465 -------ATA------TCTCAAA
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57686740 20 -  94987271 ---AACAATAACTACCTCTCAAA
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           150901 22 -    254539 AAGAACCATA-CTCTCCCATGAA
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     413934 881 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2409354 983 -   3067355 M

a score=328541.000000
s hg38.chr6_GL000254v2_alt   682557 58 +   4827813 ATATTCTTGGCTTGGTAAGAAAATTCTGAGCTGGAAGGATTCTGATTGTGAT------TAGTGT------
s panTro5.chr6             29655995 58 + 175400573 ATATTCTCGGCTTGGTAAGAAAATTCTGAGCTGGAAGGATTCTGATTGCGAT------TAGTGT------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29894234 58 + 173848474 ATATTCTCGGCTTGGTAAGAAAATTCTGAGCTGGAAGGATTCTGATTGCGAT------TAGTGT------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5697073 58 +   6154872 ATATTCTCGGCTTGGTGAGAAAATTCTGAGCTGGAAGGATTCTGATTGCGAT------TAGTGT------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29922330 57 + 172585720 ATATTCTTGGCTTGGTGAGAAAATTCTGAGCTGGAAGGATTCTGATT-CAAT------TAGTGT------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29585981 57 - 170955103 ATATTCTTGGCTTGGTGAGAAAATTCTGAGCTGGAAGGATTCTGATT-CAAT------TAGTGT------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2571168 58 -   2996164 ATATTCTTGGCTTGGTGAGAAAATTCTGAGCTGGAAGGATTCTGATTGTGAT------TAGTGT------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     335354 58 +    766320 ATATTCTTGGCTTGGTGAGAAAATTCTGAGCTGGAAGGATTCTGATTGTGAT------TAGTGT------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28797988 58 -  71996105 GTAGCTTTGGCTTGGTGAGAAAATTCTGAGCTGGAAGGATTCTGATTGCGAT------TAGTGT------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     307763 57 -    352859 ATATTCTTGGCTTGGTGAGAAAATTCTGAGCTGGAAGGATTCTGATT-CAAT------TAGTGT------
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2410339 58 -   3067355 ATATTCTTGGCTTGGTGAGAAAATTCTGAGCTGGAAGGATTCTGATTGCGAT------TAGTGT------
i colAng1.NW_012115566v1   M 983 C 0
s otoGar3.GL873742          2085057 58 -   2232465 ATATTTTTGCCTTAGTGAGAAAATCCTGACGTGGAAGGACTCTGATTCTAAT------TAAAGA------
i otoGar3.GL873742         C 0 I 6
s mm10.chr17               57686760 62 -  94987271 ATATTTTGGTTATGAAAAGTAAATTTATGGCCAGAAGGA--CTGGTCAACATGCAGGGTAGTAT------
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           150923 63 -    254539 GCATTTTTGTCCTGGGGAAAAGATCCTGGGCTGGAAGGATT-TGACCCCCCA------TAGTGAGAGTTT
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     413934 881 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=4846406.000000
s hg38.chr6_GL000254v2_alt   682615 584 +   4827813 TCCATACATTATTTTGTC-------TTTTGTCTGAAGCAATGCTGAATACAACCTCAGTCACTGAATTTCTCCTTTTGGGAGTGACAGACATTCAAGAACTGCAGCCTTTTCTCTTCGTTGTTTTCCTTACCATCTACTTCATCAGTGTGGCTGGGAATGGAGCCATTCTGATGATTGTCATCTCTGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAACCTGTCCTGCCTGGACATCTGCTACTCCAGCGTAACACTGCCAAAAATGCTGCAGAACTTCCTCTCTGCACACAAAGCAATTTCTTTCTTGGGATGCATAAGCCAACTCCATTTCTTCCACTTCCTGGGCAGCACAGAGGCCATGTTGTTGGCCGTGATGGCATTTGACCGCTTTGTGGCTATTTGCAAGCCACTTCGCTACACTGTCATTATGAACCCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGATGATTGGTTTTTTCCATGCCCTGCTGCACTCCCTAATGACCTCTCGCTTGAACTTCTGTGGTTCTAACCGTATCTATCACTTCTTCTGTGATGTGAAGCCATTGCTAAAG----------------
s panTro5.chr6             29656053 584 + 175400573 TCCATACATTATTTTGTC-------TTTTGTCTGAAGCGATGCTGAATACAACCTCAGTCACTGAATTTCTCCTTTTGGGAGTGACAGACATTCAAGAACTGCAGCCTTTTCTCTTCGTTGTTTTCCTTACCATCTACTTCATCAGTGTGGCTGGGAATGGAGCCATTCTGATGATTGTCGTCTCTGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAAGCTGTCCTGCCTGGACATCTGCTACTCCAGCGTAACACTGCCAAAAATGCTGCAGAACTTCCTCTCTGCACACAAAGCAATTTCTTTCTTGGGATGCATAAGCCAGCTCCATTTCTTCCACTTCCTGGGCAGCACAGAGGCCATGTTGTTGGCCGTGATGGCATTTGACCGCTTTGTGGCTATTTGCAAGCCACTTTGCTATACTGTCATTATGAACCCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGATGATTGGTTTTTTCCATGCCCTGCTGCACTCCCTAATGACCTCTTGCTTGAACTTCTGTGGTTCTAACCGTATCTATCACTTCTTCTGTGATGTGAAGCCATTGCTAAAG----------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29894292 584 + 173848474 TCCATACATTATTTTGTC-------TTTTGTCTGAAGCGATGCTGAATACAACCTCAGTCACTGAATTTCTCCTTTTGGGAGTGACAGGCATTCAAGAACTGCAGCCTTTTCTCTTCGTTGTTTTCCTTACCATCTACTTCATCAGTGTGGCTGGGAATGGAGCCATTCTGATGATTGTCATCTCTGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAAGCTGTCCTGCCTGGACATCTGCTACTCCAGCGTAACACTGCCAAAAATGCTGCAGAACTTCCTCTCTGCACACAAAGCAATTTCTTTCTTGGGATGCATAAGCCAGCTCCATTTCTTCCACTTCCTGGGCAGCACAGAGGCCATGTTGTTGGCCGTGATGGCATTTGACCGCTTTGTGGCTATTTGCAAGCCACTTCGCTATACTGTCATTATGAACACTCAGCTCTGTACCCAGATGGCCATCACAATCTGGATGATTGGTTTTTTCCATGCCCTGCTGCACTCCCTAATGACCTCTCACTTGAACTTCTCTGGTTCTAACCATATCTATCACTTCTTCTGTGATGTGAAGCCGTTGCTAAAG----------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5697131 584 +   6154872 TCCATACATTATTTTGTC-------TTTTGTCTGAAGCAATGCTGAATACAACCTCAGTCACTGAATTTCTCCTTTTAGGAGTGACAGACATTCAAGAACTGCAGCCTTTTCTCTTCGTTGTTTTCCTTACCATCTACTTCATCAGTGTGGCTGGGAATGGAGCCATTCTGATGATTGTCATCTCTGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAACCTGTCCTGCCTGGACATCTGCTACTCCAGCGTAACACTGCCAAAAATGCTGCAGAACTTCCTCTCTGCACACAAAGCAATTTCTTTCTTGGGATGCATAAGCCAGCTCCATTTCTTCCACTTCCTGGGCAGCACAGAGGCCATGTTGTTGGCCGTGATGGCATTTGACCGCTTTGTGGCTATTTGCAAGCCACTTCGCTATACTGTCATTATGAACCCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGATGACTGGTTTTTTCCATGCCCTGCTGCACTCCCTAATGACCTCTCGCTTGAAATTCTGTGGTTCTAACCGTATCTATCACTTCTTCTGTGATGTGAAGCCATTGCTAAAG----------------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29922387 584 + 172585720 TCCATACATTATTTTGTG-------TTTTTTTTGAAGTGATGCTGAATACAACCTCAGTCACCGAATTTCTCCTCTTGGGAGTGACAGACATTCAAGAACTGCAGCCTTTTCTCTTCGTGGTTTTCCTCACCATCTACTTCATCAGTGTGGCTGGGAATGGAGCCATTCTAATGATTGTCATCTCTGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAACCTGTCCTGCCTGGATATCTGCTACTCTACGGTGACACTGCCAAAGATGCTGCAGAACTTCCTCTCTACACACAAAGCAATTTCTTTCTTGGGATGCATAAGCCAGCTCCATTTCTTCCACTTCCTGGGCAGCACAGAGGCCATGCTGTTGGCCGTGATGGCATTTGACCGCTTTGTGGCTATCTGCAAGCCACTTCGCTACACTGTCATCATGAGCCCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGACCATAGGTTTCGTCCATGCCCTGCTGCACTCCGTAATGACTTCTCGCTTGAACTTCTGTGGTTCCAACTGTATCCATCACTTCTTCTGTGATGTGAAGCCGTTGCTAAAG----------------
i rheMac8.chr4             C 0 I 16
s macFas5.chr4             29586038 584 - 170955103 TCCATACATTATTTTGTG-------TTTTTTTTGAAGTGATGCTGAATACAACCTCAGTCACCGAATTTCTCCTCTTGGGAGTGACAGACATACAAGAACTGCAGCCTTTTCTCTTCGTGGTTTTCCTCACCATCTACTTCATCAGTGTGGCTGGGAATGGAGCCATTCTAATGATTGTCATCTCTGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAACCTGTCCTGCCTGGATATCTGCTACTCTACGGTGACACTGCCAAAGATGCTGCAGAACTTCCTCTCTACACACAAAGCAATTTCTTTCTTGGGATGCATAAGCCAGCTCCATTTCTTCCACTTCCTGGGCAGCACAGAGGCCATGCTGTTGGCCGTGATGGCATTTGACCGCTTTGTGGCTATCTGCAAGCCACTTCGCTACACTGTCATCATGAGCCCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGACCATAGGTTTCGTCCATGCCCTGCTGCACTCCGTAATGACTTCTCGCTTGAACTTCTGTGGTTCCAACTGTATCCATCACTTCTTCTGTGATGTGAAGCCGTTGCTAAAG----------------
i macFas5.chr4             C 0 I 16
s macNem1.NW_012011356v1    2571226 591 -   2996164 TCCATACACTATTTTGTGGTCTTTTTTTTTTTTGAAGTAATGCTGAATACAACCTCAGTCACCAAATTTCTCCTCTTGGGAGTGACAGACATACAAGAACTGCAGCCTTTTCTCTTCGTGGTTTTCCTCACCATCTACTTCATCAGTGTGGCTGGGAATGGAGCCACTCTAATGATTGTCATCTCTGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAACCTGTCCTGCCTGGATATCTGCTACTCTACGGTGACACTGCCAAAGATGCTGCAGAACTTCCTCTCTACACACAAAGCAATTTCTTTCTTGGGATGCATAAGCCAGCTTCATTTCTTCCACTTCCTGGGCAGCACAGAGGCCATGCTGTTGGCCGTGATGGCATTTGACCGCTTTGTGGCTATCTGCAAGCCACTTCGCTACACTGTCATCATGAGCCCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGACCATTGGTTTCTTCCACGCCCTGCTGCACTCCGTAATGACTTCTCGCTTGAACTTCTGTGGTTCCAACTGTATCCATCACTTCTTCTGTGATGTGAAGCCATTGCTAAAG----------------
i macNem1.NW_012011356v1   C 0 I 16
s cerAty1.NW_012002711v1     335412 591 +    766320 TCCATACATTATTTTGTGGTTTTTTTTTTTTTTGAAGTAATGCTGAATACAACCTCAGTCACCAAATTTCTCCTCTTGGGAGTGACAGACATACGAGAACTGCAGCCTTTTCTCTTCGTGGTTTTCCTCACCATCTACTTCATCAGTGTGGCTGGGAATGGAGCCACTCTAATGATTGTCATCTCTGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAACCTGTCCTGCCTGGATATCTGCTACTCTACGGTGACACTGCCAAAGATGCTGCAGAACTTCCTCTCTACACACAAAGCAATTTCTTTCTTGGGATGCATAAGCCAGCTCCATTTCTTCCACTTCCTGGGCAGCACAGAGGCCATGCTGTTGGCCGTGATGGCATTTGACCGCTTTGTGGCTATCTGCAAGCCACTTCGCTACACTGTCATCATGAACTCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGACCATTGGTTTCTTCCATGCCCTGCTGCACTCCGTAATGACTTCTCGCTTGAACTTCTGTGGTTCCAACTGTATCCATCACTTCTTCTGTGATGTGAAGCCGTTGCTAAAG----------------
i cerAty1.NW_012002711v1   C 0 I 16
s chlSab2.chr17            28798046 584 -  71996105 TCCATACATTATTTTGTG-------TTTTTTTTGAAGTGATGCTGAATACAACCTCAGCCACCGAATTTCTCCTCTTGGGAGTGACAGACATACAAGAACTGCAGCCTTTTTTCTTCGTGGTTTTCCTCACCATCTACTTCATCAGCATGGCTGGGAATGGAGCCATTCTAATGATTGTCATCTCTGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAACCTGTCCTGCCTGGATATCTGCTACTCTATGGTGACACTGCCAAAGATGCTGCAGAACTTCCTCTCTACATACAAAGCAATTTCTTTCTTGGGATGCATAAGCCAGCTCCATTTCTTCCACTTCCTGGGCAGCACAGAGGCCATGCTATTGGCCGTGATGGCATTTGACCGCTTTGTGGCTATCTGCAAGCCACTTCACTACACTGTCATCATGAACCCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGACCATTGGTTTCTTCCATGCCCTGCTGCACTCCGTAATGACTTCTCGCTTGAACTTCTGTGGTTCCAACTGTATCCATCACTTCTTCTGTGATGTGAAGCCATTGCTAAAG----------------
i chlSab2.chr17            C 0 I 16
s manLeu1.NW_012099655v1     307820 591 -    352859 TCCATACATTATTTTGTGGTTTTTTTTTTTTTTGAAGTAATGCTGAATACAACCTTAGTCACCAAATTTCTCCTCTTGGGAGTGACAGACATACAAGAACTGCAGCCTTTTCTCTTCGTGGTTTTCCTCACCATCTACTTCATCAGTGTGGCTGGGAATGGAGCCATTCTAATGATTGTCATCTCTGATCCTAGACTCCATTCCCCTATGTATTTCTTCCTGGGAAACCTGTCCTGCCTGGATATCTGCTACTCTACGGTGACACTGCCAAAGATGCTGCAGAACTTCCTCTCTACACACAAAGCAATTTCTTTCTTGGGATGCATAAGCCAGCTCCATTTCTTCCACTTCCTGGGCAGCACAGAGGCCATGCTGTTGGCCATGATGGCATTTGACCGCTTTGTGGCTATCTGCAAGCCACTTCGCTACACTGTCATCATGAACTCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGACCATTGGTTTCTTCCATGCCCTGCTGCACTCCGTAATGACTTCTCGCTTGAACTTCTGTGGTTCCAACTGTATCCATCACTTCTTCTGTGATGTGAAGCCGTTGCTAAAG----------------
i manLeu1.NW_012099655v1   C 0 I 16
s colAng1.NW_012115566v1    2410397 584 -   3067355 TCCATACATTATTTTGTG-------TTTTTTTTGAAGTGATGCTGAACACAACCTCAGTCACCAAATTTCTCCTCTTGGGAGTGACAGACATTCAAGAACTGCAGCCTTTTTTCTTCATGGTTTTCCTCACCATCTACTTCATCAGTGTGGCTGGGAATGGAGCCATTCTAATGATTGTCATCTCTGATCCTAGACTCCATTCCCCTATGTATTTTTTCCTGGGAAACCTGTCCTGCCTGGATATCTGCTACTCTGCGGTGACACTGCCAAAGATGCTGCAGAACTTCCTCTCTACACACAAAGCAATTTCTTTCTTAGGATGCATAAGCCAGCTCCATTTCTTCCACTTCCTGGGCGGCACAGAGGCCATGCTGTTGGCTGTGATGGCATTTGACCGCTTTGTGGCTATCTGCAAGCCACTGCACTACACTGTCATCATGAACCCTCAGCTCTGTACCCAGATGGCCATCACAATCTGGACCATTGGTTTCTTCCATGCCCTGCTGCACTCCGTAATGACTTCTCGCTTGAACTTCTGTGGTTCCAACTGTATCCATCACTTCTTCTGTGATGTGAAGCCGTTGCTAAAG----------------
i colAng1.NW_012115566v1   C 0 I 16
s proCoq1.NW_012152574v1     414815 584 +    730504 TCCATACATCATTGTGTC-------TTTTCTTTGAAGTGATGCTGAATCAAACTTCGGTCACTGAATTTCTCCTCCTAGAAGTGACAGACATCAAAGAACTTCAGCTTTTTCTCTTTGTGGTTTTCCTCACCATTTACTTCCTCAACATGGCTGGGAATGGAGCCATCCTGATGATTGTTTTCTCTGACCCAAGACTCCATTCACCCATGTATTTCTTCCTGGGAAACCTGTCGTGTATAGATATCTGCTACTCCACGGTGACACTGCCAAAGATGCTGGAGAACTTCCTCTCTACAAATAAAGCAATTTCCTTCTTGGGATGCATAAGCCAGCTTCATTTCTTCCACTTCCTGGGCAGCACAGAAGCCATGTTGTTGGCCGTGATGGCATTTGATCGCTTTGCGGCTATCTGCAAACCACTTCATTACACTGTCATCATGAGGCCTCAGCTGTGTACCCAGGTGGCTATCACAATTTGGACCATTGGTTTTTTTCATGCCCTGCTGCACTCTGTAATGACCTCTCACTTGAACTTCTGTGGTTCCAACCATATCCATCACTTCTTCTGTGATGTTAAACCATTGCTAAAG----------------
i proCoq1.NW_012152574v1   I 881 C 0
s otoGar3.GL873742          2085121 584 -   2232465 TATATATATTATTTTGTC-------TCTTCTTTGAAGTGAGGCTGAATCAAACTTTAGTCACTGAGTTTCTCCTCCTGGGAATGACAGACATCCAAGAACTGCAGCCTTTTCTCTTTGGGGTTTTCCTCACCATCTACTTCCTCAACGTGTCAGGCAATGGAGCCATCCTGATGATTGTCATCTCTGACCCAAGACTGCATTCACCCATGTATTTCTTCCTGGGAAACCTGTCATGTCTAGATATCTTCTACTCCACGGTGACACTGCCAAAGATGCTGAAAAACTTCCTTTCTACACATAAAACAATTTCCTTTTCGGGATGCATCAGCCAACTTCATTTCTTCCATTTTTTGGGCAGCACCGAGGCCATGCTATTGGCTGTGATGGCATTTGATCGTTTTATGGCTATATGCAAACCACTTCATTATACTGCCGTCATGAGGCCTCAGTTCTGTACGCAGATGGCTACCACAATCTGGATCATTGGTTTTTTCCATGCCCTGCTACACTCCATAATGACCTCTCGCTTGAACTTCTGTGGTTCCAACCATATCCATCATTTCTTCTGTGATGTTAAACCATTGCTGGAG----------------
i otoGar3.GL873742         I 6 C 0
s mm10.chr17               57686822 581 -  94987271 --TATATACTAAT-TGTC-------CTTTCTTATAGGTGATGTCTAATCAAACCTCAGTCACTGAATTTCTCCTCCTGGGAGTAACAGATATACAAGAATTAAACCCTATTCTCTTTGTGATTTTCTTCACCATCTACTTTATCAATATAACTGGAAATGGAGCCATCCTGATGATTGTCATCTTGGACCCAAGACTCCACTCACCTATGTATTTCTTCCTGGGAAACCTAGCATGTCTAGATATCTCCTATTCTACTGTAACAGTGCCAAAGCTGTTGCAGAACCTCCTCTCCACAAGCAAAGCTATTTCCTTCTTGGGATGCATAACTCAGCTTCATTTCTTCCACTTCCTGGGTAGCACTGAGACCATGCTGCTGCCAGTGATGGCATTTGACCGCTTTGTGGCTATCTGCAGACCACTCCACTATTCTGTGATCATGAATCACCAGCTCTGTATTCACATGACTGTTACTATCTGGACCCTGGGCTTTTTCCATGCCTTGCTTCACTCTGTAATGACATCTCGTTTGAGCTTCTGTGGTCCCAATCATGTCCATCATTTCTTCTGTGATATTAAGCCATTGCTGGAT----------------
i mm10.chr17               C 0 I 16
s dasNov3.JH569098           150986 599 -    254539 CACAGATGTTTTCTTGTC-------TTTTCTCCCA-GTGATGCTGAATCAAACTTCAGTCACTGAATTTTTCCTCCTGGGACTGACAGACATCCACGAGCTGCAGCCTCTGCTCTTTGTGGTTTTCTGCACCATCTACATCAGCAGTGTGGCTGGGAATGGGGCAATTCTGATGATCGTCATCTCTGACCCAAGACTCCATTCTCCTATGTACTACTTACTGGGAAATCTCTCATGCCTAGATATCTGCTACTCCACGGTGACACTGCCAAAGATGCTGGAGAACTTAGTCTCTTCATACAAAGCAATTTCTTTCTTGGGATGCATCAGCCAGCTGCATTTCTTCGACTTCCTGGGCAGCACGGAGGCCTTGCTGTTGGGCGTGATGGCCTTGGATCGATTTGTGGCAATCTGCAAACCACTTCATTACACCACCATAATGAATCATCAGCTCTGCGTCCAGATGGCCAGCACAGTTTGGGTCATTGGTTTCTTCCATGCCCTGCTGCACTCCATAATGACCTCTCGCTTGAATTTCTGTGGTTCCAACCATATCCATCATTTCTACTGTGATGTTAAGGCATTGCTGGAACTGGCCTGTGGGAACG
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I

a score=2885039.000000
s hg38.chr6_GL000254v2_alt   683199 348 +   4827813 CTG----------------AGCTTAATCAGTGGCTGCTCAGTACTGTCACAGGGACAATCGCCATGGGCCCCTTCTTTCTCACATTACTCTCCTATTTCTACATTATCACCCATCTCTTCTTCAAGACTCATTCTTTTAGCATGCTCCGCAAAGCACTGTCCACTTGTGCCTCCCACTTGATGGTAGTTATTCTTTTGTATGCACCTGTTCTCTTCACCTATATTCATCATGCCTCAGGGACCTCCATGGACCAGGACCGGATCACTGCCATCATGTATACTGTGGTCACTCCAGTACTAAACCCACTGATCTACACTTTGAGGAACAAGGAAGTGAAAGGGGCCTTTAATAGAGCAATGAAAA
s panTro5.chr6             29656637 364 + 175400573 CTGGCCTGTGGGAACACTGAGCTTAATCAGTGGCTGCTCAGTACTGTCACAGGGACAATCGCCATGGGCCCCTTCTTTCTCACATTACTCTCCTATTTCTACATTATCACCCATCTCTTCTTCAAGACTCATTCTTTTAGCATGCTCCGCAAAGCACTGTCCACTTGTGCCTCCCACTTCATGGTAGTTATTCTTTTGTATGCACCTGTTCTCTTCACCTATATTCATCATGCCTCAGGGACCTCCACGGACCAGGACCCGATCACTGCCATCATGTATACTGTGGTCACTCCAGTACTAAACCCACTGATCTACACTTTGAGAAACAAGGAAGTGAAAGGGGCCTTTAATAGAGCAATCAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29894876 364 + 173848474 CTGGCCTGTGGGAACACTGAGCTTAATCAGTGGCTGCTCAGTACTGTCACAGGGACAATCGCCATGGGCCCCTTCTTTCTCACATTACTCTCCTATTTCTACATTATCACCCATCTCTTCTTCAAGACTCATTCTTTTAGCATGCTCCGCAAAGCACTGTCCACTTGTGCCTCCCACTTCATGGTAGTTATTCTTTTGTATGCACCTGTTCTCTTCACCTATATTCATCATGCCTCAGGGACCTCCATGGACCAGGACCGGATCACTGCCATCATGTATACTGTGGTCACTCCAGTACTAAACCCACTGATCTACACTTTGAGGAACAAGGAAGTGAAGGGGGCCTTTAATAGAGCAATCAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5697715 364 +   6154872 CTGGCCTGTGGGAACACTGAGCTTAATCAGTGGCTGCTCAGTACTGTCACAGGGACAATTGCCATGGGCCCCTTCTTTCTCACATTTCTCTCCTATTTCTACATTATCACCCATCTCTTCTTCAAGACTCATTCTTTTAGCATGCTCCACAAAGCACTGTCCACTTGTGCCTCCCACTTCATGGTAGTTATTCTTTTGTATGCACCTGTTCTCTTCACCTATATTCATCACGCCTCAGGGACCTCCATGGACCAGGACAGGATCACTGCCATCATGTATACTGTGGTCACTCCAGTACTAAACCCACTGATCTACACTTTGAGGAACAAGAAAGTGAAGGGGGCCTTTAATAGAGCAATCAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29922987 348 + 172585720 ----------------CGGAGCTCAATCAGTGGCTGCTCAGTACCATCACAGGGACAATCGCAATGGGCTCTTTCTTTCTCACATTTCTCTCTTATTTCTACATTATCACCCATCTCTTCTTCAAGACTCATTCTTTTGGCATGCTCCACAAAGCACTGTCCACTTGTGCCTCCCACTTCATGGTAGTTATTCTTTTCTATGCACCTGTTCTCTTCACCTATATTCATCCTGCCTCAGGGACCTCCATGGACCAGGACCGGATCATTGCCATCATGTATACTGTGGTCACTCCTGTACTAAACCCACTGATCTACACTTTGAGGAACAAGGAAGTGAAGGGGGCCTTTAATAGAGCAATCAAAA
i rheMac8.chr4             I 16 C 0
s macFas5.chr4             29586638 348 - 170955103 ----------------CGGAGCTCAATCAGTGGCTGCTCAGTACCATCACAGGGACAATCGCAATGGGCTCTTTCTTTCTCACATTTCTCTCTTATTTCTACATTATCACCCATCTCTTCTTCAAGACTCATTCTTTTGGCATGCTCCACAAAGCACTGTCCACTTGTGCCTCCCACTTCATGGTAGTTATTCTTTTCTATGCACCTGTTCTCTTCACCTATATTCATCCTGCCTCAGGGACCTCCATGGACCAGGACCGGATCATTGCCATCATGTATACTGTGGTCACTCCTGTACTAAACCCACTGATCTACACTTTGAGGAACAAGGAAGTGAAGGGGGCCTTTAATAGAGCAATCAAAA
i macFas5.chr4             I 16 C 0
s macNem1.NW_012011356v1    2571833 348 -   2996164 ----------------CGGAGCTCAATCAGTGGCTGCTCAGTACCATCACAGGGACAATCGCAATGGGCTCTTTCTTTCTCACATTTCTCTCTTATTTCTACATTATCACCCATCTCTTCTTCAAGACTCATTCTTTTAGCATGCTCCACAAACCACTGTCCACTTGTGCCTCCCACTTCATAGTAGTTATTCTTTTCTATGCACCTGTTCTCTTCACCTATATTCATCTTGCCTCAGGGACCTCCATGGACCAGGACCGGATCATTGCCATCATGTACACTGTGGTCACTCCAGTACTAAACCCACTGATCTACACCTTGAGGAACAAGGAAGTGAAGGGGGCCTTTAATAGAGCAATCAAAA
i macNem1.NW_012011356v1   I 16 C 0
s cerAty1.NW_012002711v1     336019 348 +    766320 ----------------CTGAGCTCAATCAGTGGCTGCTCAGTACCGTCACAGGGACAATCGCAATGGGCTCTTTCTTTCTCACATTTCTCTCTTATTTCTACATTATCACCCATCTCTTCTTCAAGACTCATTCTTTTAGCATGCTCCACAAAGCACTGTCCACTTGTGCCTCCCACTTCATAGTAGTTATTCTTTTCTATGCACCTGTTCTCTTCACCTATATTCATCCTGCCTCAGGGACCTCCATGGACCAGGACCGGATCATTGCCCTCATGTACACTGTGGTCACTCCAGTACTAAACCCACTGATCTACACCTTGAGGAACAAGGAAGTGAAGGGGGCCTTTAATAGAGCAATCAAAA
i cerAty1.NW_012002711v1   I 16 C 0
s chlSab2.chr17            28798646 348 -  71996105 ----------------CTGAGCTCAATCAGTGGCTGCTCAGTACTGTCACAGGGACAATTGCCATGGGCTCTTTCTTTCTCACATTTCTCTCTTATTTCTACATTATCACCCATCTCTTCTTCAAGACTCATTCTTTTGGCATGCTCCACAAAGCACTGTCCACTTGTGCTTCCCACTTCATGGTAGTTATTCTTTTTTATGCACCTGTTCTCTTCACCTATATTCGTCCTGCCTCAGGGACCTCCATGGACCAGGACCGGATCATTGCCATCATGTACACTGTGGTCACTCCAGTACTAAACCCACTGATCTACACTTTGAGGAACAAGGAAGTGAAGGGGGCCTTTAATAGAGCAATCGAAA
i chlSab2.chr17            I 16 C 0
s manLeu1.NW_012099655v1     308427 348 -    352859 ----------------CTGAGCTCAATCAGTGGCTGCTCAGTACCGTCACAGGGACAATCGCAATGGGCTCTTTCTTTCTCACATTTCTCTCTTATTTCTACATTATCACCCATCTCTTCTTCAAGACTCATTCTTTTAGCATGCTCCACAAACCACTGTCCACTTGTGCCTCCCACTTCATGGTAGTTATTCTTTTGTATGCACCTGTTCTCTTCACCTATATTCATCCTGCCTCAGGGACCTCCATGGACCAGGACCGGATCATTGCCATCATGTACACTGTGGTCACTCCAGTACTAAACCCACTGATCTACACTTTGAGGAACAAGGAAGTGAAGGGGGCCTTTAATAGAGCAATCAAAA
i manLeu1.NW_012099655v1   I 16 C 0
s colAng1.NW_012115566v1    2410997 348 -   3067355 ----------------CTGAGCTCAATCAGTGGCTGCTCAGTACTGTCACAGGGACAATTGCAATGGGCTCTTTCTTTCTCACATTTCTCTCTTATTTCTACATTATCACCCATCTCTTCTTCAAGACTCATTCTTTTGGCATGCTCCACAAAGCACTGTCCACTTGTGCCTCCCACTTCATGGTAGTTATTCTTTTCTATGCAACTGTTCTCTTCACCTATATACATCCTGCCTCGGGGACCTCCATGGACCAGGACCGGATCATTGCCATCGTGTACACTGTGATCACTCCTGTACTAAACCCACTGATCTACACTTTGAGGAACAAGGAAGTGAAGGGGGCCTTTAACAGAGCAATCAAAA
i colAng1.NW_012115566v1   I 16 C 0
s proCoq1.NW_012152574v1     415399 364 +    730504 CTTGCCTGTGGAAACACTAAGCTCAATCAGTGGCTGCTCAATACTGTCACAGGGACCATTGCCATGAGTTCCTTCTTTCTGACACTTCTCTCCTATTTCTACATTATCACCTATCTCTTCTTCAAAACCCACTCTTGCAGCATGCTTCACAAAGCACTGTCCACTTGCGCCTCCCACTTCACGGTAGTTATTCTTTTCTATGCCCCTGTTCTCTTCATCTACATTCATCCTGACTCAGAGAGCTCCATGGACCAGGACTGGATCATTGCCATCATGTACAGTGTGGTCACTCCTGCACTAAATCCACTGATCTATACTTTGAGGAACAAGGAAGTGAAGGGGGGCTTGTGTAGGGTGATCAGAA
i proCoq1.NW_012152574v1   C 0 I 65
s otoGar3.GL873742          2085705 364 -   2232465 CTTGCCTGTGGAAACACAGAGCTCAATCAGTGGCTGCTCAATACTGTCACAGGGACCATTGCCATTAGTTCCTTCTTTCTGACACTTCTCTCCTATTTCTACATCATCACCTATCTCTTCTTCAAAACCCACTCTTGCAGTATGCTTCACAAAGCATTGTCCACTTGTGCCTCCCACTTCATGGTAGTTATGCTTTTCTATGCACCTGTTCTCTTCATCTATATTTTCCCTGCCTCAGGGAGCTCAATGGACAAGGATTGGATCATTGCCATCATGTACAGTGTGGTCACTCCTGTGCTTAACCCACTGATCTATACTTTGAGGAACAAGGAAGTGAAGGGGGCTTTGGGTAGGGTGATCAGAA
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57687419 348 -  94987271 ----------------CTGAGCTCAACCTTTGGCTGCTCAATACAGTCACAGGCACCATTGCCCTCACTTCCTTTTTTCTGATATTTCTCTCTTATTTCTACATCATCACCAATCTTCTCCTCAAGACCCGTTCTTGCAGCATGCTCCACAAAGCTCTGTCTACCTGTGCCTCCCACTTCATGGTTGTTGTTCTGTTCTATGCTCCTGTTCTCTTCACCTACATCCGTCCTGCCTCAGGCAGCTCTCTGGATCAGGATACAATCATCGCCATCATGTACAGTGTGGTCACCCCTGCTCTCAATCCACTCATCTACACCTTGAGAAACAAGGAAGTGAGGAGTGCATTGAATAGAAAGGTGAGAA
i mm10.chr17               I 16 C 0
s dasNov3.JH569098           151585 348 -    254539 ----------------TTGACCTCAACCAATGGTTGATTAATGTTGTCACAGGGACCATTGCCATGGGCCCCTTCTTTCTGACACTTCTCTCCTATTTCTACATTCTCACCTACCTCTTCTTCAAGACTCATTCTTGCAGAATGCTTCAGAAAGCACTCTCCACCTGTGCCTCCCACTTCATGGTTGTTATTCTTTTCTATGTTCCTGTTCTCTTCACCTACACTCGTCCTGCTTCAGGCAGCTCTATGGATCAGGATGCAGTGATTGCCCTCATGTACAGTGTGGTCACTCCTGTACTAAATCCACTGATCTATACCTTGAGGAACAAGGAAGTGAAGCAGGCCATGAGTAGGGCAATCAGAG
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I

a score=412913.000000
s hg38.chr6_GL000254v2_alt   683547 68 +   4827813 GGTGGCTTTGGCCTAAAGAAATCTTGAAGAACTCTTCTGAAGCATAAATAA----ACA---ATTAAAAAGATGAG
s panTro5.chr6             29657001 68 + 175400573 GGTGGCTTTGGCCTAAAGAAATCTTGAACAACTCTTCTGAAGCATAAATAA----ACA---ATTAAAAAGTTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29895240 68 + 173848474 GGTGGCTTTGGCCTAAAGAAATCTTGAAGAACTCTTCTGAAGCATAAATAA----ACA---ATTAAAAAGTTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5698079 68 +   6154872 GGTGGCTTTGGCCTAAAGAAATCTTGAAGAACTCTTTTGAAGCATAAATAA----ACA---ATTAAAAAGTTGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29923335 68 + 172585720 GGTAGCTTTGACCTAAAGAAATCTTGAAGAACTCTTCTGAAGCATAAATAA----ACA---ATTAAAAAGTTGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29586986 68 - 170955103 GGTAGCTTTGACCTAAAGAAATCTTGAAGAACTCTTCTGAAGCATAAATAA----ACA---ATTAAAAAGTTGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2572181 68 -   2996164 GGTAGCTTTGACCTAAAGAAATCTTGAAGAACTCTTCTGAAGCATAAATAA----ACA---ATTAAAAAGTTGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     336367 68 +    766320 GGTAGCTTTGACCTAAAGAAATCTTGAAGAACTCTTCTGAAACATAAATAA----ACA---ATTAAAAAGTTGAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28798994 68 -  71996105 GGTAGCTTTGACCTAAAGAAATCTTGAAGAACTCTTCTGAAGCATAAATAA----ACA---ATTAAAAAGTTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     308775 68 -    352859 GGTAGCTTTGACCTAAAGAAATCTTGAAGAACTCTTCTGAAGCATAAATAA----ACA---ATTAAAAAGTTGAG
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2411345 68 -   3067355 GGTAGCTTTGACCTAAAGAAATCTTGAAGAACTCTTCTGAAGCATAAATAA----ACA---ATTAAAAAGTTGAG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2086069 70 -   2232465 CAAGGTTCCAGCTTGAAGAAATCT--AAGAACTCTTCTGGGAGATAAACAACCAGGCA---ATGAGAAAATTAAG
i otoGar3.GL873742         C 0 I 1
s mm10.chr17               57687767 69 -  94987271 GATGGCTCTGACCTGAAGAA--TCTAAAGAAGTCTACTTCAGTGCAAATAA----CCAGGCAATGAAAAATTAAG
i mm10.chr17               C 0 I 7
s dasNov3.JH569098           151933 69 -    254539 -GAAGGTCTGACTTGAAACA--CTTTCAGAAATCTTCTGAGGCATAAATAGGCATGCA---ATGAGAAACCTGAG
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     415763 65 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=2582363.000000
s hg38.chr6_GL000254v2_alt   683615 419 +   4827813 -TTTGTAATTACATTGT-TTCTTAAAT------TATTTAG----------------------------AA-ATGTAC-AACAGAGGGAACTGGATAAAACA-AAAATATATGGAAAAATATGCTGTAGTTGTATTTAACAATGCTTTCCTGGATTATATAAGGGACATTTGAATGAATGGGATACTAGCC--ATGGAACTCTACTGCTGACTATGTTTTGAAGATATCAGTTGATAAAATTGA--TGTTAGG---TTTTTTATATGTTCTTATG-ATGAAATTGGGTATAGAAATATGCCTGTTTTTCCCATATATCAAATATATGGATAATACTTGGGTCTATTTAT------CTATCTGGTCCCTCTAGGTTAATGCATTATAATATTATAAATAAA-----------------ATTATTATGCTT-------TGATATTTTGAGGATTTTACTTTAGGGCCATAGTTACTCAACTGGAAAAGA----------------ATATGCTAAC
s panTro5.chr6             29657069 419 + 175400573 -TTTGTAATTACATTGT-TTCTTAAAT------TATTTAG----------------------------AA-ATGTAC-AACAGAGGGAACTGGATAAAACA-AAAATATATGGAAAAATATGCTGTAGTTGTATTTAACAATGCTTTCCTGGATTATATAAGGGACATTTGAATGAATGGGATACTAGCC--ATGGAACTCTACTGCTGACTATGTTTTGAAGATATCAGTTGATAAAATTGA--TGTTAGG---TTTTTTATATGTTCTTATG-ATGAAATTTGGTATAGAAATATGCCTGTTTTTCCCATATATCAAATATATGGATAATACTTGGGTCTATTTAT------CTATCTGGTCCCTCTGGGTTAATGCATTATAATATTATAAATAAA-----------------ATTATTATGCTT-------TGATATTTTGAGGATTTTACTTTAGGGCCATAGTTACTCAACTGCAAAAGA----------------ATATGCTAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29895308 419 + 173848474 -TTTGTAATTACATTGT-TTCTTAAAT------TATTTAG----------------------------AA-ATGTAC-AACAGAGGGAACTGGATAAAACA-AAAATATATGGAAAAATATGCTGTAGTTGTATTTAACAATGCTTTCCTGGATTATATAAGGGACATTTGAATGAATGGGATACTAGCC--ATGGAACTCTACTGCTGACTATGTTTTGAAGATATCAGTTGATAAAATTGA--TGTTAGG---TTTTTTATATGTTCTTATG-ATGAAATTGGGTATAGAAATATGCCTGTTTTTCCCATGTATCAAATATATGGATAATACTTGGGTCTATTTAT------CTATCTGGTCCCTCTAGGTTAATGCCTTATAATATTATAAATAAA-----------------ATTATTATGCTT-------TGATATTTTGAGGATTTTACTTTAGGGCCATAGTTACTCAACTGGAAAAGA----------------ATATGCTAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5698147 419 +   6154872 -TTTGTAATTACATTGT-TTCTTAAAT------TATTTAG----------------------------AA-ATGTAC-AACAGACGGAACTGGATAAAACA-AAAATATATGGAAAAATATGCTGTAGTTGTATTTAACAATGCTTTCCTGGATTGTATAAGGGACATTTGAATGAATGGGATACTAGCC--ATGGAACTCTACTGCTGACTATGTTTTGAAGATATCAGTTGATAAAATTGA--TGTTAGA---TTTTTTATATGTTCTTATG-ATGAAATTGGGTATAGAAATATGCCTGTTTTTCCCATGTATCAAATATATGGATAATATTTGGGTCTATTTAT------CTATCTGGTCCCTCTAGGTTAATGCATTATAATATTATAAATAAA-----------------ATTATTATGCTT-------TGATATTTTGAGGATTTTACTTTAGGGCCATGGTTACTCAACTGGAAAACA----------------ATGTGCTAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29923403 419 + 172585720 -TTTGTAATTATACTGT-TTCTTAAAT------TATTTAG----------------------------AA-ATGTAC-AACAGAGGGAACTGGATAAAACA-AAAATATATGGAAAAATATGCTGTAATTGTATTTAACAATGTTTTCCTAGGTTATATAAGGGACATTTGAATGAATGGGATGCTAACC--ATGGAACTCTACTGCTGACTAAGTTTTGAAGATATCAGTTGATAAAATTGA--TGTTAGG---TTTTTTATATGTTCTTATA-ATGAAATTGGGTATAGAAATATGCCTGTGTTTCCCATGTATTAAATAGATGGATAATACTTGGGTCTATTTAT------CTATCTGGTCCTACTAGGTTAACGCATTGTAATATTATAAATAAA-----------------ACTATTATGCTT-------TGATATTATGAGGATTTTATTTTAGGGCCATGGTTACTCAACTGGAAAAGT----------------ATATGCTAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29587054 419 - 170955103 -TTTGTAATTATACTGT-TTCTTAAAT------TATTTAG----------------------------AA-ATGTAC-AACAGAGGGAACTGGATAAAACA-AAAATATATGGAAAAATATGCTGTAATTGTATTTAACAATGTTTTCCTAGGTTACATAAGGGACATTTGAATGAATGGGATGCTAACC--ATGGAACTCTACTGCTGACTAAGTTTTGAAGATATCAGTTGATAAAATTGA--TGTTAGG---TTTTTTATATGTTCTTATA-ATGAAATTGGGTATAGAAATATGCCTGTGTTTCCCATGTATTAAATAGATGGATAATACTTGGGTCTATTTAT------CTATCTGGTCCTACTAGGTTAACGCATTGTAATATTATAAATAAA-----------------ACTATTATGCTT-------TGATATTATGAGGATTTTATTTTAGGGCCATGGTTACTCAACTGGAAAAGT----------------ATATGCTAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2572249 419 -   2996164 -TTTGTAATTATACTCT-TTCTTAAAT------TATTTAG----------------------------AA-ATGTAC-AACAGAGGGAACTGGATAAAACA-AAAATATATGGAAAAATATGCTGTAATTGTATTTAACATTGTTTTCCTAGGTTATATAAGGGACATTTGAATGAATGGGATACTAGCC--ATGGAACTCTACTACTGACTAAGTTTTGAAGATATCAGTTGATAAAATTGA--TGTTAAG---TTTTTAATACGTTCTTATA-ATGAAATTGGATATAGAAATATGCCTGTGTTTCCCATGTGTTAAATAGATGGATAATACTTGGGTCTATTTGT------CTATCTGGTCCTTCTAGGTTAATGCATTATAATATTATAAATAAA-----------------ATTACTATGCTT-------TGATATTATGAGGATTTTATTTTAGGGCCATGGTTACTCAACTGGAAAAGT----------------ATATGCTAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     336435 419 +    766320 -TTTGTAATTATACTGT-TTCTTAAAT------TATTTAG----------------------------AA-ATGTAC-AACAGAGGGAACTGGATAAAACA-AAAATATATGGAAAAATATGCTGTAATTGTATTTAACATTGTTTTCCTAGGTTATATAAGGGACATTTGAATGAATGGGATACTAGCC--ATGGAACTCTACTGCTGACTAAGTTTTGAAGATATCGGTTGATAAAATTGA--TGTTAAG---TTTTTAATACGTTCTTATA-ATGAAATTGGGTATAGAAATATGCCTGTGTTTCCCATGTGTTAAATAGATGGATAACACTTGGGTCTATTTAT------CTATCTGGTCCCTCTAGGTTAATACATTATAATATTATAAATAAA-----------------ATTACTATGCTT-------TGATATTTTGAGGATTTTATTTTAGGGCCATGGTTAGTCAACTGGAAAAGT----------------ATATGCTAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28799062 418 -  71996105 -TTTGTAATTATACTGT-TTCTTAAAT------TATTTAG----------------------------AA-ATGTAC-AACAGAGGGAACTGGATAAAACA-AAAATATATGT-AAAATATGCTGCAATTGTATTTAACAATGTTTTCCTAGGTTATATAAGGGACATTTGAATGAATGGGATGCTAGCC--ATGGAACTCTACTGCTGACTAAGTTTTGAAGATATCAGTTGATAAAATTGA--TGTTAGG---TTTTTTATATGTTCTTATA-ATGAAATTGGGTATAGAAATATGCCTGTGTTTCCCATGTGTTAAATAGATGGATAATACTTGGGTCTATTTAT------CTATCTCATCCTACTAGGTTAATGCATTATAATATTATAAATAAA-----------------ATTACTATGCTT-------TGATATTTTGAGGATTTTATTTTAGGGCCATGGTTACTCAACTGGAAAAGT----------------ATATGCTAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     308843 417 -    352859 -TTTGTAATTATACTCT-TTCTTAAAT------TATTTAG----------------------------AA-ATGTAC-AACAGAGGGAACTGGATAAAACA-AAAATATATGGAAAAATATGCTGTAATTGTATTTAACAATGTTTTCCTAGGTTATATAAGGGACATTTGAATGAATGGGATGCTAGCC--ATGGAACTCTACTGCTGACTAAGTTTTGAAGATATCAGTTGATAAAATTGA--TGTTAGG---TTTTTTATATGTTCTTATA-ATGAAATTGGTATTAGAAATATGCC--TGTTTCCCATGTATTAAATAGATGGATAATACTTGAGTCTATTTGT------CTATCTGGTCCTACTAGGTTAATGCATTATAATATTATAAATAAA-----------------ATTACTATGCTT-------TGATATTATGAGGATTTTATTTTAGGGCCATAGTTACTCAACTGGAAAAGT----------------ATATGCTAAC
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2411413 419 -   3067355 -TTTGTAATTATACTGT-TTCTTAAAT------TATTTAG----------------------------AA-ATGTAC-AACAGAGGGAACTGGATAAAACA-AAAATATATGGAAAAATATGCTGTAATTGTATTTAACAATGTTTTCCTAGGTTATATAAGGGACATTTGAATGAATGGGATGCTAGCC--ATGGAACTCCACTGCTGACTAAGTTTTGAAGGTATCAGTTGATAAAATTGA--TGTTAGG---TTTTTTATATGTTCTTATA-ATGAAATTGGGTATAGAAATATGCCTGTGTTTCCCATGTATTAAATAGATGGATAATACTTGGGTCTATTTAT------CTATCTGGTCCTACTAGGTTAATGCATTATAATATTATAAATAAA-----------------ATTACTATGCTT-------TGATATTTTGAGGATTTTATTTTAGGGCCATGGTTACTCAACTGGAAAAGT----------------ATATGCTAAC
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     415828 410 +    730504 -TGTGTAACTATATTGC-TTCTCAAAT------TGTTTAG-----------------------------A-ACGTAT-AACACAGGGAACTGGATAAAATA-AAACTATATGGGAAAATATGGTCTAGCTGCATTTAA-AATGCTTTCCTAGGTTACATAAGGGAAATATGAACAAATGGGATGCTACCC--ATGGAACTCTAATGCTGAATTT-TTGGGGGGATATCAGTTGATCAAATCGATTTATTATG---TTCCTTATGTGTTCTTAT--ATGAAATTGAGTATACAAATATACCTATATTACCCATGTATTGAGTAGAATAATATTT----GGTCTATTTAT------GTATATCATCCCTCTAGGTTAACATATTAT---GTAATCAATAAA-----------------ATTATTATGCTT-------TTATATTTTGAGGATTTTAATTTGGAGCCATGGCTAATTAATTAGAAAAGT----------------ATATGCTAAC
i proCoq1.NW_012152574v1   I 65 C 0
s otoGar3.GL873742          2086140 451 -   2232465 -TATATAACTATATTAC-TTCTCAAAT------TGTTTAGAAATATATAAAAAAGCAAAAATAAAGCAAA-ATATATGAATAAAGCAAACTGAATAAAGCA-AAAATATATGTGACAATATAGTCTAGTTGTTTTTAACAATGTTTTCCAAGGTTATACAAGGGAAATTTG---AAATGGGATAACATCCCAATAGGGCACAAATGCTAAATTTGTTTTGGGGGTATCAGTTCATAAAATCAATTTGTTATA--TTTTCTTATGTGTTCTTGT--ATGAAACTGAGTATACAAGTATGCCCATATTACCCAAGTACTGAGTAGATGGACAATA----AGTCTATTTATTTAATATTATATGGTCTCTCTAACCTAACACATTATAGCATGGTCAACAAA-----------------ATGATTATGTGT-------CTATATTTTCAGGATTTTAATTTGAAGCCATGGTTACTGAATTTAAAAAGT----------------ATATGCTAAC
i otoGar3.GL873742         I 1 I 290
s mm10.chr17               57687843 381 -  94987271 -TCTGAAATTACGATATGTTCTTATGTATAATAAATGTAC----------------------------AA-ATATAT-TTCTGACCAAATTGAATATAATGTCAAATATATCTAAACATAT-----------------TGATGTTTTA-------AAGCAAAGGAAGCTT-AATTTGTGGCCCTCTAGTC--ATAGAATTTGTTCACTGAATTTGATTTTGGCATATCAGTTGATGACATTGA--TGTGTAA---CTTACTCTAACATGTTATGTATGTACCTGGGTAGAGAAATTTGTGTATACTACCCATGTCT--AGTATATTGATCATCTT----TCAACTTAT-----ATTGTTTGG-------------ATGAATTAT----------------------------------TATTATGCTT-------GCTTATTTTGAAGAATT---ATTAAAACTATGGATTCTCAATTTGAAAAGTTAGTTGCAAATTATGAGTGTGCTACT
i mm10.chr17               I 7 C 0
s dasNov3.JH569098           152002 430 -    254539 ATTTAAATGTATACTTT-CTCTCAAAG------AGTTTGT----------------------------AGTATATAT-ACATAAAGGAAATGTGTACAGAA-AAACCA-ATGG-AATATATAATTTAGGTGTATTAAGCACTGCATTCCTAGGTAATATAAGAGAAACTTGAACTGATGG-ACACTGGCT--TTGAAATCCTCATGGTGAATTTCTTTT-AGGATATTAGTTCCTATAATTAA--TATGGCATATTTTCTAATGTACTCTTCT--ATGAAATCAGATAATGTAATATGCCTTTATTGCTCATAT------------GACTAGAATTATGTCTTTTTAT------CTGTGTGATCCTCCTTGATTAACACATTTTAATGTGAGCAATAAattattattagtagtaatattattattgttgatattattaAATTTTGAGTGTGTTGATTTAGGGTCATGAGTATTCAACT-CAAAAGC----------------AACTGCTAAT
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I

a score=304229.000000
s hg38.chr6_GL000254v2_alt   684034 45 +   4827813 TGACGTATGAGTTAAGGAGAAT---TTTTAAGGGGTGGGTCTTGATTT
s panTro5.chr6             29657488 45 + 175400573 TGACATATGAGTTAAGGAGAAT---TTTTAAGGGTTGGGTCTTGATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29895727 45 + 173848474 TGACGTATGAGTTAAGGAGAAT---TTTTGAGGGGTGGGTCTTGATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5698566 45 +   6154872 TGACATATGAGTTAAGGAGAAT---TTTTAAGGGGTGGGTCTTGATTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29923822 45 + 172585720 TGACATATGAGTTAAGGAGAAT---TTTTAAGGGGTGTGCCTTGATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29587473 45 - 170955103 TGACATATGAGTTAAGGAGAAT---TTTTAAGGGGTGTGCCTTGATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2572668 45 -   2996164 TGACATATGAGTTAAGGAGAAT---TTTTAAGGGGTGTGCCTTGATTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     336854 45 +    766320 TGACATATGAGTTAAGGAGAAT---TTTTAAGGGGTGTGCCTTGATTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28799480 44 -  71996105 TGACAGATGAGTTAAGGAGAAT---TTTTAA-GGGTGTGCCTTGATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     309260 45 -    352859 TGACATATGAGTTAAGGAGAAT---TTTTAAGGGGTGTGCCTTGATTT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2411832 45 -   3067355 TGACATATGAGTTAAGGAGAAT---TTTTAAGGGGAGTGCCTTGATTT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     416238 45 +    730504 TGACACATGAGTTAAGGATAAT---TTTTAAGAGGTATGTCCTGATTT
i proCoq1.NW_012152574v1   C 0 I 23693
s otoGar3.GL873742          2086881 45 -   2232465 TGGCATATAAGTTAAGAAGAAT---TGTTAAGAGATATGTCCTAATTT
i otoGar3.GL873742         I 290 C 0
s mm10.chr17               57688224 40 -  94987271 AAAAGTTTCAGTGATAAAACATTTATTTTAAG--------CCTAATTT
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           152432 43 -    254539 --TCACATGAGTTAAGTGGAAT---TTTTTAAAGGTATGCCATGATTT
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I

a score=51967.000000
s hg38.chr6_GL000254v2_alt   684079 8 +   4827813 CTTATTCT
s panTro5.chr6             29657533 8 + 175400573 CTTATTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29895772 8 + 173848474 CTTATTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5698611 8 +   6154872 CCTATTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29923867 8 + 172585720 CTTATTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29587518 8 - 170955103 CTTATTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2572713 8 -   2996164 CTTATTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     336899 8 +    766320 CTTATTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28799524 8 -  71996105 CTTATTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     309305 8 -    352859 CTTATTCT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2411877 8 -   3067355 CTTATTCT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2086926 8 -   2232465 TTTGTTCT
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57688264 8 -  94987271 TTGATTCT
i mm10.chr17               C 0 I 72423
s dasNov3.JH569098           152475 8 -    254539 TTCCTTTT
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     416283 23693 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=456134.000000
s hg38.chr6_GL000254v2_alt   684087  89 +   4827813 TCAAACAAGGAGACAA----GTAATTAAAGCAAATGACATTGTAATCACTAAAT---------------AACAACAACA--ACAAAAAC----CCTGACAGTTCATCTAAATAG
s panTro5.chr6             29657541  93 + 175400573 TCAAACAAGGAGACAAATAAGTAATTAAAGCAAATGACATTGTAATCACTAAAT---------------AACAACAACA--ACAAAAAC----CCTGACAGTTCATCTAAATAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29895780  93 + 173848474 TCAAACAAGGAGACAAATAAGTAATTAAAGCAAATGACATTGTAATCACTAAAT---------------AACAACAACA--ACAAAAAC----CCTGACAGTTCATCTAAATAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5698619  93 +   6154872 TCAAACAAGGAGACAAATAAGTAATTAAAGCAAATGACATTGTAATCACTAAAT---------------AACAACAACA--ACAAAAAC----CCTGACAGTTCATCTAAATAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29923875  96 + 172585720 TTAAACAAAGAGACAAATAAGTAATTAAAGCAAATGACATTGTAATCACTAaat------------aacaacaacaaca--acaaaaac----TCTGACAGTTCATCTAAATGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29587526  96 - 170955103 TTAAACAAAGAGACAAATAAGTAATTAAAGCAAATGACATTGTAATCACTAaat------------aacaacaacaaca--acaaaaac----TCTGACAGTTCATCTAAATGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2572721 100 -   2996164 TTAAACAAGGAGAC----AAGTAATTAAA-CAAATGGCATTATaaccactaaataacaat---aacaacaacaacaaca--acaaaaac----TCTGACAATTCATCTAAATAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     336907 107 +    766320 TTAAACAAGGAGACAAATAAGTAATTAAA-CAAATGACATTGTaaccactaaataacaataacaacaacaacaacaaca--acaaaaac----TCTGACAGTTCATCTAAATAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28799532  96 -  71996105 TTAAACAAAGAGACAAATAAGTAATTAAAGCAAATGACATTGTAATCACTAaat------------aacaacaacaaca--acaaaaac----TCTGACAGTTCATCTAAATGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     309313  96 -    352859 TTAAACAAGGAGACAAATAAGTAATTAAAGCAAATGACATTGTAATCACTAaat------------aacaacaacaaca--acaaaaac----TCTGACAGTTCATCTAAATAG
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2411885  94 -   3067355 TTAAACA--GAGACAAATAAGTAATTAGAGCAAATGACATTGTAATCACTAaat------------aacaacaacaaca--acaaaaac----TCTGACAGTTCATCTAAATAG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2086934 102 -   2232465 TCACACAGAGAGGCAAATAATTAATTAAAACAAATTACAGGACAATAATTAATT------------AAAACAAATTACAGGACAAAGACATCAGCTGCCAATTTTTCTCAAAAG
i otoGar3.GL873742         C 0 I 20327
s dasNov3.JH569098           152483  89 -    254539 CTAAGCAAGAAAAGGAATA-GTAATTAAAGCCAATGATATTGTAATAAAAAATT------------------AACAGAA--ATAAAGTA----ACCAACGGGTCACCTAAAGTA
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57688272 72423 -  94987271 I
e proCoq1.NW_012152574v1     416283 23693 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=2119505.000000
s hg38.chr6_GL000254v2_alt   684176 430 +   4827813 TTTTGGCACCTCTGTCTCCAGATATCTCTTATTAGTCAACTGTCCACACCCTCAATGATTACT-TAAAATATTA-AAAATCGGAGATAATTTAACAAAGCTCTTAAGACTCTTTCAATCTCGTTAGGATGTTATTGTTCCCTCAGCCT---------------TTAATT-------------------------------------------------------------------GCGGAAGATGACGACTTTATCAAAATTTTATTTTCTTTTTCTTACTTGGCACCAAACTCATACTAAGCAAAGGCATAGAAGTCATAATTATTGAAGTATTTC---------TAGACATGAACTGCTATGTTCCTCACTTTTTAAGTTCCTATAAATGGCTTCTGTCCCTGAAAAAATGGTGGATTCTATAATTTATAAATATTTAAA-----GAATAGACAGAAAATACTATGAAAAGGCATTTTAAGCTGGTGGACTGACCCTTCAAGGTCCCTGCATGCACTTTTGTAAA
s panTro5.chr6             29657634 430 + 175400573 TTTTGGCACCTCTGTCTCCAGATATCTTTTATTAGTCAACTGTCCAAATCCTCAATGATTACT-TAAAATATTA-AAAATCGGAGATAATTTAACAAAGCTCTTAAGACTCTTTCAATCTCATTAGGATGTTATTGTTCCCTCAGCCT---------------TTAATT-------------------------------------------------------------------GTGGAAGATGATGACTTTATCAAAATTTTATTTTCTTTTTCTTACTTGGCACCAAACTCATACTAAGCAAAGGCATAGAAGTCATAATTATTGAAGTATTTC---------TAGACATGAACTACTATGTTCCTCACTTTTTAAGTTCCTATAAATGGCTTCTGTCCCTGAAAAAATGGTGGATTCTATAATTTATAAATATTTAAA-----GAATAGACAGAAAATACTATGAAAAGGCATTTTAAGCTGGTGGACTGACCCTTCAAGGTCCCTGCATTCACTTTTGTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29895873 430 + 173848474 TTTTGGCACCTCTGTCTCCAGATATCTTTTATTAGTCAACTGTCCAAACCCTCAATGATTACT-TTAAATATTA-AAAATCGGAGATAATTTAACAAAGCTCTTAAGACTCTTTCAATCTCGTTAGGATGTTATTGTTCCCTCAGCCT---------------TTAATT-------------------------------------------------------------------GCGGAGGATGATGACTTTATCAAAATTTTATTTTCTTTTTCTTACTTGGCATCAAACTCATACTAAGCAAAGGCATAGAAGTCATAATTATTGAAGTATTTC---------TAGACATGGACTACTATGTCCCTCACTTTTTAAGTTCCTATAAATGGCTTCTGTCCCTGAAAAAATGGTGGATTCTATAATTTATAAATATTTAAA-----GAATAGACAGAAAATACTATGAAAAGGCATTTTAAGCTGGCGGACTGACCCTTCAAGGTCCCTGCATTCACTTTTGTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5698712 430 +   6154872 TTTTGGTACCTCTGTCTCCAGATATCTTTTATTAGTCAACTGTCCAAACCCTCAATGATTACT-TAAAATATTA-AAAATCGGAGATAATTTAACAAAGCTCTTAAGACTCTTTCAATCTCGTTAGGATGTTATTGTTCCCTCAGCCT---------------TTAATT-------------------------------------------------------------------GCGGAAGATGATGACTTTATCAAAATTTTATTTTCTTTTTCTTACTTGGCACCAAACTCATACTAAGCAAAGGCATAGAAGTCATAATTATTGAAGTATTTC---------TAGACATGAACTACTATGTTCCTCACTTTTTAAGTTCCTATAAATGGCTTCTGTCCCTAAAAAAGTGGTGGATTCTATAATTTATAAATTTTTAAA-----GAATAGACAGAAAATACTATGAAAAGGCATTTTAAGCTGGTGGACTGACCCTTCAAGGTCCCTGCATTCACTTTTGTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29923971 430 + 172585720 TTTTGGCACCTCTGTCTCCAGATATCTTTTAGAAGTCAACTGTCCAAACCCTCAATGATTACT-TAAAATATTA-AAAATCGGAGATAATTTAACAAAGCTCTTAAGACTCTTTCAATCTCATTAGAAAGTTATTGTTTCCTCAGCTT---------------TTAATT-------------------------------------------------------------------GTGGAAGATGATGACTTTGTCAAAATTTTATTTTCTTTTTCTTACTTGTCACCAAACTCATACTAAGGAAAGGCATAGAAGTCATAATTATTGAAGAATTTC---------TAGACATGAACTACTATGTTCCTCACTTTTTAAGTTCCTATAAATGACTTCTGTCCCTGAAGAAATGGTGGATTCTATAATTTATAAATATTTAAA-----GAATAGACAGAAAATACTATGAAAAGGCATTTTAAGCTGGTGGACTGACCCTTCAAGGTCTCTGCATTCACTTTTGTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29587622 430 - 170955103 TTTTGGCACCTCTGTCTCCAGATATCTTTTAGAAGTCAACTGTCCAAACCCTCAATGATTACT-TAAAATATTA-AAAATCGGAGATAATTTAACAAAGCTCTTAAGACTCTTTCAATCTCATTAGAAAGTTATTGTTTCCTCAGCTT---------------TTAATT-------------------------------------------------------------------GTGGAAGAGAATGACTTTATCAAAATTTTATTTTCTTTTTCTTACTTGTCACCAAACTCATACCAAAGAAAGGCATAGAAGTCATAATTATTGAAGAATTTC---------TAGACATGAACTACTATGTTCCTCACTTTTTAAGTTCCTATAAATGACTTCTGTCCCTGAAGAAATGGTGGATTCTACAATTTATAAATATTTAAA-----GAACAGACAGAAAATACTATGAAAAGGCATTTTAAGCTGGTGGACTGACCCTTCAAGGTCTCTGCATTCACTTTTGTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2572821 427 -   2996164 TTTTGGCACCTCTGTATCCAGATATCTTTTAGAAGTCAACGGTCCAAACCGTCAATGATTACT-TAAAATATTA-AAAATCGGAGATAATTTAACAGAGCTCTTAAGACTCTTTCAATCTCATTAGAAAG---TTGTTTCCTCTGCCT---------------TTAATT-------------------------------------------------------------------GTGGAAGATAATGACTTTATCAAAATTTTATTTTCTTTTTCTTCCTTGTCACCAAACTCATACTAAGGAAAGGCAGAGAAGTCATAATTATTGAAGAATTTC---------TAGACATGAACTACTATGTTCCTCACTTTTTAAGTTCCTATAAATGACTTCTGTCCCTGAAGAAATGGTGGATTCTATAATTTATAAATATTTAAA-----GAACAGACAGAAAATACTATGAAAAGGCATTTTAAGCTGGTGGACTGACCCTTCGAGGTCTCTGCATTCACTTTTGTAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     337014 430 +    766320 TTTTGGCACCTCTGTATCCAGATATCTTTTAGAAGTCAACTGTCCAAACCCTCAATGATTACT-TAAAATATTA-AAAATCGGAGATAATTTAACAAAGCTCTTAAGACTCTTTCAATCTCATTAGAAAGTTATTGTTTCCTCAGCTT---------------TTAATT-------------------------------------------------------------------GTGGAAGATAATGACTTTATCAAAATTTTATTTTCTTTTTCTTACTTGTCACCAAACTCATACTAAGGAAAGGCAGAGAAGTCATAATTATTGAAGAACTTC---------TAGACATGAACTACTATGTTCCTCACTTTTTAAGTTCCTATAAATGACTTCTGTCCCTGAAGAAATGGTGGATTCTACAATTTATAAATATTTAAA-----AAACAGACAGAAAATACTATGAAAAGGCATTTTAAGCTGATGGACTGACCCTTCGAGGTCTCTGCATTCACTTTTGTAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28799628 429 -  71996105 TTTTGTCACCTCTGTCTCCAGATATCTTTTAGAAGTGAACTGTCCAAACCCTCAATGATTACT-TAAAATGTTA-AAAATCGAAGATAATTTAACAAAGCTCTTAAGACTCTTTCAATCTCATTAGAAAGTTATTGTTTCCTCAGCTT---------------TTAATT-------------------------------------------------------------------GTGGAAGAGGATGACTTTATCAAAATTTTATTTTCTTTTTCTTACTTGTCACCAAACTCATGCTAAGGAAAGGCATAGAAGTCATAATTATTGAAGAATTTC---------TAGACATGAACTACTATGTTCCTCACTTTTTAAGTTCCTATAAATGACTTCTGTCCCTGAAGAAATGGTGGATTCTACAATTTATAAATATTTAAA-----GAATAGACAGAAAATACTATGAAAAGGCATTTTAAGCTCGTGCACTGA-CCTTCAAGGTCTCTGCATTCACTTTTGTAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     309409 430 -    352859 TTTTGGCACCTCTGTCTCCAGATATCTTTTAAAAGTCAACTGTCCAAACCCTCAATGATTACT-TAAAATATTA-AAAATCGGAGATAATTTAACAAAGCTCTTAAGACTCTTTCAATCTCATTAGAAAGTTATTGTTTCCTCAGCTT---------------TTAATT-------------------------------------------------------------------GTGGAAGATGATGACTTTATCAAAATTTTATTTTCTTTTTCTTACTTGTCACCAAACTCATACTAAGGAAAGGCATAGAAGTCATAATTATTGAAGAATTTC---------TAGACATGAACTACTATGTTCCTCACTTTTTAAGTTCCTATAAATGACTTCTGTCCCTGAAGAAATGGTGGATTCTACAATTTATAAATATTTAAA-----GAATAGACAGAAAATACTAAGAAAAGGCATTTTAAGCTGGTGGACTGACCCTTCAAGGTCTCTGCATTCACTTTTGTAAA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2411979 430 -   3067355 TTTTGGCACCTCTGTCTCCAGATATCTTTTAGAAGTCAACTGTCCAAACCCTCAATGATTACT-TAAAATATTA-AAAATCGGAGATAATTTGACAAAGCTCTTAAGACTCTTTCCATCTCATTAGAAAGTTATTGTTTCCTCAGCTT---------------TTAATT-------------------------------------------------------------------GTGAAAGATGATGACTTTATCAAAATTTTATTTTCTTTTTCTTACTTGTCACCAAACTCATACTAAGGAAAGGCATAGAAGTCATAATTATTGAAGAATTTC---------TAGACATGAACTACTATGTTCCTCATTTTTTAAGTTCCTATAAATGACTTCTGTCCCTGAAAAAATGGTGAATTCTACAATTTATAAATATTTAAA-----GAATAGACAGAAAATACTATGAAAAGTCATTTTAAGCTCGTGCACTGACCCTTCAAGGTCTCTGCATTCACTTTTGTAAA
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH569098           152572 512 -    254539 TACTGGAATCTCTCAATGCAGAGATCTTTTGGTATTCAACTAACCAAACTATCAAAAAATCCTGTGACATCTCATAAAACTGCAGGCAGTTTCAAAATGGATGCAGAATTCCTCTTGTCTAGTGACTGTATTATTTTCCCTTTGGCTTGGTCATGGAAAATTATTAATTTTCAAAACACTTTAAACTTTTTCGTTTTCCTTTTTGACATGTTTTGTTGTAATATGATGTAATACTGGTGAAATATAATGATTTCATTAAAACTTTCTATTGTTTTCCTTTCCTGGCAACAAACTCATACTAATTTAAAGCAATGAATTCATACTTGCTGAGATGATTCTGAAGCAAATGGACAAAAGATGTGATATTCCTCAC-CTCAATGTCCCTGTAAGTCACAAATAACACTAAAATGCTAGGAGTTGGCAGCATTTTTATATATTTAGAAAGTCAAACAATCAGACAAGACCATGAAAATGCA--------------GCTACCCATTCAAGA-AGCTGCATTCACTGTTTCAGA
i dasNov3.JH569098         C 0 I 39199
e mm10.chr17               57688272 72423 -  94987271 I
e proCoq1.NW_012152574v1     416283 23693 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2087036 20327 -   2232465 I

a score=3647500.000000
s hg38.chr6_GL000254v2_alt   684606 763 +   4827813 TCTAAACAATTTTATTCTGACTTCTCTCCATGCTTCTTTTGTCTTCTAACTTCACCTTCTTTGGTCCCTCAATTCCAGTTTAGTTTATAATAAAACAAAACAACAATGTGTGTGTGGAGATGGCAACTCCTAATCTCAACTGTCCCACACTATCAGTAATATATTTGATGCATATTTTTATACAATATGTTTTTTCTGTCATTTCTGGTGGTGAGAATCTGCCACATAATTCAAACTTCAGAGAGTTTGTGAACTGTAGAAGAGCACATGGGgttctggttaactattagtgcataacacattaggaccccaaaattcaatcgcttaaaacacttaagttacatgctttgttgggtaag-aaatttggAAAAACACAGCAGAGAATGGTTGACTCTGATCCATAATGTCTCTGACCTTTGCTGGAATGACTTCAG-TCTGGTCACGGAATAGCTGAGAGCTGAGTAAG----TCTCTCTCTCTATTTCTTTTTCTCCTCCCTTAATTGCTCCTTGTGACTATCATATGCTTCTTCAACAGGGAAGCCTCAGACAGACTTTTTCATGTTCCAGTAGACCACGGCAAAAGCTGCCAGCCTGGGGCTgagattgaccagtaataaaatgtctcctattcaaaaaagcccaggatctgatggctttattgatgtatactaccaaacatttataggataattaatgccaatcttcttaaactcactcaaaaatatgaaaaggaagaaatactttcaaactcactttatgaggtc
s panTro5.chr6             29658064 763 + 175400573 TCTAAACAATTTTATTCTGACTTCTCTCCATGCTTCTTTTGTCTTCTAACTTCACCTTCTTTGGTCCCTCAATTCCAGTTTAGTTTATAATAAAACAAAACAACAATGTGTGTGTGGAGATGGCAACTCCTAATCTCAACTGTCCCACACTATCAGTAATATATTTGATGCATATTTTTATACAATATGTTTTTTCTGTCATTTCTGGTGGTGAGAATCTGCCACATAAGTCCAACTTCAGAGAGTTTGTGAACTGCAGAAGAGCACATGGGgttctggttaactattagtgcataacacattaggaccccaaaattcaatcgcttaaaacacttaagttacatgcttcgttgggtaag-aaatttggaaaaacacagcagagaatggttgactctgatccataatgtctcTGACCTTTGCTGGAATGACTTCAG-TCTGGTCACGGAATAGCTGAGAGCTGAGTAAG----TCTCTCTCTCTATTTCTTTTTCTCCTCCGTTAATTGCTCCTTGTGACTATCATATGCTTCTTCAACAGGGAAGCCTCAGACAGACTTTTTCATGTTCCAGTAGACCACAGCAAAAGCTGCCAGCCTGGGGCTgagattgagcagtaataaaatgtctcctattcaaaaaagcccaggatctgatggctttattgatgtatactaccaaacatgtaaaggataattaatgccaatcttcttaaactcgctcaaaaatatgaaaaggaagaaatactttcaaactcactttatgaggtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29896303 759 + 173848474 TCTAAACAATTTTATTCTGACTTCTCTCCATGCTTCTTTTGTCTTCTAACTTCACCTTCTTTGGTCTCTCAATTCCAGTTTAGTTTATAATAAAACAAAACAACAATGTGTGTGTGGAGATGGCAACTCGTAATCTCAACTGTCCCACACTATCAGTAATATATTTGATGCATGTTTTTATACAATATGTTTTTTCTGTCATTTCTGGTGGTGAGAATCTGCCACATAATTCAAACTTCAGAGAGTTTGTGAACTGTAGAAGAGCACATGGGgttctggttaactattagtgcataacacattaggaccccaaaattcaatcgcttaaaacaCTTAAGTTACATGCTTCATTGGGTAAG-AAATTTGGAAAAACACAGCAGAGAATGGTTGACTCTGATCCATAATGTCTCTGACCTTTGCTGGAATGACTTCAG-TCTGGTCATGGAATAGCTGAGAGCTGAGTAGG----TCTCTCTCTCTATTTCTTTTTCTCCTTCCTTAAGGAA----GGAGACTGTCATATGCTTCTTCAACAGGGAGGTCTCAGACAGACTTTTTCATATTCCAGTAGACCATGGCAAAAGCTGCCTGCCTGGGGCTgagattgagcagtaataaaatgtctcctattcaaaaaagcccaggatctgatggctttattgatgtatactaccaaacatttaaaggataattaatgccaatcttcttaaactcgcttaaaaatatgaaaaggaagaaatactttcaaactcactttatgaggtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5699142 765 +   6154872 TCTAAACAATTTTATTCTGACTTCTCTCCATGCTTCTTTTTTCTTCTAACTTCACCTTCTTTGGTCCCTCAATTCCAGTTTAGTTTATAATAAAACAAAATGACAATGTGTGTGTGGAGATGGCAACTCCTAATCTCAAATGTCCCACACTATCAGTAATATATTTGATGCATATTTTTATACAATATGTTTTTTCTGTCATTTCTGGTGGTGAGAATCTGCCACATAATTCAAACTTCAGAGAGTTTGTGAACTGTAGAAGAGCACATGGGgttctggttaactgttagtgcataacacattaggaccccaaaattcaatcgcttaaaacacttaagttacatgcttcgttgggtaag-aaatttggAAAAACACAGCAGAGAATGGTTGACTCTGATCCATAATGTCTCTGACCTTTGCTGGAATGACTTCAG-TCTGGTCATGGAATAGCTGAGAGCTGAGTAAG--tctctctctctctatttctttttctcctccctTAATTGCTCCTTGTGACTATCATATGCTTCTTCAACAGGGAAGCCTCAGACAGACTTTTTCATGTTCCAGTAGACCACGGCAAAAGCTGCCAGCCTGGGGCTgagattgaccagtaataaaatgtctcctattcaaaaaagcccaggatctgatggctttattgatgtatactaccaaacatttataggataattaatgccaatcttcttaaactcactcaaaaatatgaaaaggaagaaatactttcaaactcactttatgaggtc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29924401 765 + 172585720 TCTAAACGATTTTATTCTGACTTCTCTCCATGCGTCTTTTGTCTTCTAACTCCACCTTCTTTGGTCCCTCAATTCCAGTTTAGTTTATAACAAAACAAAACAACAATGTGTGTGTGGAGATGGCAACTCCTAATCTCAACTGTCCCACACTATCAGTAATATATTCGATGCATG-TTTTATACAATATGTTTTTTCTCTCATTTCTGGTGGTGAGAATTTGTCACATAATTCAAACTTCACAGAGTGTGTGAACTATAGAAGAGCACATGGGgttctggttaactattagtgcataacacacaaggaccccaaaattcaatcccttaaaacaattaagttacgtgcttcattgggtaag-aaatttggAAAAACACAGCAGAGAATGGTTGACTATGATCCATAGTGTCTCTGACCTTTGCTGGAATGACCTCAATTCTGGTCGTGGAATAGCTGAGAGCTGAGTAAG--TCTCTCTCTCTTTATTTCTTTTTCTCCTTCCTTAATTGTTTATTGTGACTGTCATATGCTTCTTCAACAGGGAAGCCTCAGACAGACTTTTTCGTATTCCAGTAGACCATGGCAAAAGCTGCCAGCCTGGGGCTgagattgaccagtaataaaatgtctcctattcaaaaaagcccaggatctgatggctttattgatgtatactaccaaacatttaaaggataattaatgccagtcttctcaaacttgctcaaaaatatgaaaaggaagaaatacttttaaattcgctttatgaggtc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29588052 765 - 170955103 TCTAAACGATTTTATTCTGACTTCTCTCCATGCGTCTTTTGTCTTCTAACTCCACCTTCTTTGGTCCCTCAATTCCAGTTTAGTTTATAACAAAACAAAACAACAATGTGTGTGTGGAGATGGCAACTCCTAATCTCAACTGTCCCACACTATCAGTAATATATTCGATGCATA-TTTTATACAATATGTTTTTTCTCTCATTTCTGGTGGTGAGAATTTGTCACATAATTCAAACTTCACAGAGTGTGTGAACTATAGAAGAGCACATGGGgttctggttaactattagtgcatgacacactaggaccccaaaattcaatcccttaaaacaattaagttacatgcttcattgggtaag-aaatttgggaaaacacagcagagaatggttgactctgatccataatgtctctgacctttgctggaatgacttcaattctggtcgtggaatagctgagagctgAGTAAG--TCTCTCTCTCTTTATTTCTTTTTCTCCTTCCTTAATTGCTCATTGTGACTGTCATATGCTTCTTCAACAGGGAAGCCTCAGACAGACTTTTTCATGTTCCAGTAGACTATGGCAAAAGCTGCCAGCCTGGGGCTgagattgaccagtaataaaatgtctcctattcaaaaaagcccaggatctgatggctttattgatgtatactaccaaacatttaaaggataattaatgccaatcttctcaaacttgctcaaaaatatgaaaaggaagaaatactttcaaattcgctttatgaggtc
i macFas5.chr4             C 0 I 7443
s macNem1.NW_012011356v1    2573248 765 -   2996164 TCTAAACGATTTTATTCTGACTTCTCTCCATGAGTCTTTTGTCTTCTAACTCCACCTTCTTTGGTCCCTCAATTCTAGTTTAGTTTATAACAAAACAAAACAACAATGTGTGTGTGGAGATGGCAACTCCTAATCTCAACTGTCCCACACTATCAGTAATATATTCGATGCATA-TTTTATACAATATGTTTTTTCTCTCATTTCTGGTGGTGAGAATTTGTCACATAATTCAAACTTCACAGAGTGTGTGAACTATAGAAGAGCACATGGGgttctggttaactattagtgcatgacacactaggaccccaaaattcaatcccttaaaacaattaagttacatgcttcattgggtaag-aaatttgggaaaacacagcagagaatggttgactctgatccataatgtctctgacctttgctggaatgacttcaattctggtcgtggaatAGCTGAGAGCTGAGTAAG--TCTCTCTCTCTTTATTTCTTTTTCTCCTTCCTTAATTGCTCATTGTGACTGTCATATGCTTCTTCAACAGGGAAGCCTCAGACAGACTTTTTCATATTCCAGTAGACCGTGGCAAAAGCTGCCAGCCTGGGGCTgagattgaccagtaataaaatgtctcctattcaaaaaaacccaggatctgatggctttattgatgtatactaccaaacatttaaaggataattaatgccaatcttctcaaacttgctcaaaaatatgaaaaggaagaaatactttcaaatttgctttatgaggtc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     337444 765 +    766320 TCTAAACGATTTTATTCTGACTTCTCTCCATGCGTCTTTTGTCTTCTAACTCCACCTTCTTTGGGCCCTCAATTCGAGTTTAGTTTATAACAAAACAAAACAACAAGGTGTGTGTGGAGATGGCAACTCCTAATCTCAACTGTCCCACACTATCAGTAATATATTCGATGCATA-TTTTATACAATATGTTTTTTCTCTCATTTCTGGTGGTGAGAATTTGTCACATAATTCAAACTTCACAGAGTGTGTGAACTATAGAAGAGCACATGGGgttctggttaactattagtgcataacacactaggaccccaaaattcaatcccttaaaacaattaagttacatacttcattgggtaag-aaatttggaaaaacacagcagagaatggttgactctgatccataatgtctctgacctttgctggaatgacttcaattctggtggtggaatAGCTGAGAGCTGAGTAAG--TCTCTCTCTCTTTATTTCTTTTTCTCCTTCCTTAATTGCTCATTGTGACTGTCATATGCTTCTTCAACAGGGAAGCCTCAGACAGACTTTTTCGTATTCCAGTAGACCATGGCAAAAGCTGCCAGCCTGGGGCTgagattgaccagtaataaaatgtctcctattcaaaaaaacccaggatctgatggctttattgatgtatactaccaaacatttaaaggataattaatgccaatcttctcaaacttgctcaaaaatatgaaaaggaagaaatactttcaagttcgctttatgaggtc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28800057 761 -  71996105 TCTAAACGATTTTATTCTGACTTCTCTCCATGCGTCTTTTGTCTTCTAACTCCACCTTCTTTGGTCCCTCAATTCCAGTTTAGTTTATAACAAAACAAAACAACAATGTGTGTGTGAAGATGGCAACTCCTAATCTCAACTATCCCACACTATCAGTAATATATCCTATGCATA-TTTTATACAATATATTTTTTCTCTCATTTCTGGTGGTGAGAATTTGTCACATAATTCAAAGTTCACAGAGTGTGTGAACTATAGAAGAGCACATGGGGTTCTGGTTAAC----AGtgcataacacactaggaccccaaaattcaatcccttaaaacaattaagttacatgcttcattgggtaag-aaatttggaaaaacacagcagagaatggttgactctgatccataatgtttctgacctttgctggaatgacttcaactctggtcatggaatagctgagagctgAGTAAG--TCTCTCTCTCTTTATTTCTTTTTCTCCTTCCTTAATTGCTCATTGTGACTGTCATATGCTTCTTCAACAGGGAAGCCTCAGACAGACTTTTTCATGTTCCAGTAGACTATGGCAAAAGCTGCCAGCCTGGGGCTgagattgaccagtgataaaatgtctcctattcaaaaaagcccaggatctgatggctttattgatgtatactaccaaacatttaaaggataattaatgccagtcttctcaaacttgctcaaaaatatgaaaaggaagaaatactttcaaattcgctttatgaggtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     309839 768 -    352859 TCTAAACGATTTTATTCTGACTTCTCTCCATGCGTCTTTTGTCTTCTAACTCCACCTTCTTTGGTCCCTCAATTCTAGTTTAGTTTATAACAAAACAAAACAACAATGTGTGTGTGGAGATGGCAACTCCTAATCTCAACTGTCCCACACTATCAGTAATATATTCGATGCATA-TTTTATACAATATGTTTTTTCTCTCATTCCTGGTGGTGAGAATTTGTCACATAATTCAAACTTCACAGAGTGTGTGAACTATAGAAGAGCACATGGGgttctggttaactattagtgcatgacacactaggaccccaaaattcaatcccttaaaacaaTTAAGTTACATGCTTCATTGGGTAAGAAAATTTGGGAAAACACAGCAGAGAATGGTTGACTCTGATCCATAATGTCTCTGACCTTTGCTGGAATGACTTTAATTCTGGTCGTGGAATAGCTGAGAGCTGAGTAAGTCtctctctctctttatttctttttcttcttccttAATTGCTCATTGTGACTGTCATATGCTTCTTCAACAGGGAAGCCTCAGACAGACTTTTTCATATTCCAGTAGACCATGGCAAAAGCTGCCAGCCTAGGGCTAagattgaccagtaataaaatgtctcctattcaaaaaaacccaggatctgatggctttattgatgtatactaccaaacatttaaaggataattaatgccagtcttctcaaacttgctcaaaaatatgaaaaggaagaaatacttttaaattcgctttatgaggtc
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2412409 765 -   3067355 TCTAAACGATTTTATTCTGACTTCTCTCCATGCGTCTTTTGTCTTCTAACTCCACCTTCTTTGGTCCCTCAATTCCAGTTTAGTTTATAACAAAACAAAACAACAATGTGTGTGTGGAGATGGCAACTCCTAATGTCAGTTGTCCCACACTATCAGTAATATATTCGATGCATA-TTTTATACAATATGGTTTTTCTCTCATTTCTGGTAGTGAGAATTTGTCACATAATTAAAACTTCACAGAGTGTGTGAACTATAGAAGAGCACATGGGgttctggttaactattagtgcataacacactaggaccccaaaattcaatcccttaaaacaattaagttacatgcttcactgggtaag-aaatttggAAAAACACAGCAGAGAATGGTTGACTCCGATCCATAATGTCTCTGACCTTTGCTGGAATGACTTCAACTCTGGTCATGGAATAGCTGGGAGCTGAGTAAG--TCTCTCTCTCTTTATTTCTTTTTCTCCTTCCTTAATTGCTCATTGTGACTGTCATACGCTTCATCAACAGGGAAGCCTCAGACAGACTTTTTCACGTTCCAGTAGACCATGGCAAAAGCTGCCAGCCTGGGGCTgagattgaccagtaataaaatgtctcctattcaaaaaagcccaggatctgatggctttattgatgtatactaccaaacatttaaaggataattaatgccaatcttctgaaacttgctcaaaaatatgaaaaggaagaaatactttcaaattcgctttatgaggtc
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57688272 72423 -  94987271 I
e dasNov3.JH569098           153084 39199 -    254539 I
e proCoq1.NW_012152574v1     416283 23693 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2087036 20327 -   2232465 I

a score=35370.000000
s hg38.chr6_GL000254v2_alt   685369 9 +   4827813 agcattacc
s panTro5.chr6             29658827 9 + 175400573 agcattacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29897062 9 + 173848474 agcattacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5699907 9 +   6154872 agcattacc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29925166 9 + 172585720 tgcattacc
i rheMac8.chr4             C 0 I 7168
s macNem1.NW_012011356v1    2574013 9 -   2996164 agcattacc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     338209 9 +    766320 agcattacc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28800818 9 -  71996105 agcattacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     310607 9 -    352859 agcattacc
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2413174 9 -   3067355 aacattacc
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57688272 72423 -  94987271 I
e dasNov3.JH569098           153084 39199 -    254539 I
e proCoq1.NW_012152574v1     416283 23693 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2087036 20327 -   2232465 I
e macFas5.chr4             29588817 7443 - 170955103 I

a score=2924944.000000
s hg38.chr6_GL000254v2_alt   685378 953 +   4827813 ctaataccaaagccagacaacgcaactataaggaaatgcagttacaggccaatatccctgatgaacatagatgcaaaaatcctcaatgaaaactagcaaaatgaattcaacagcacattaaaatgatcatacaccatgactaagtgggattcatccttaggatgcaagaatgggttaacatacacaaattaataaatatgatatgccacattaacatactgagggataaaaaccatatgataataggtgcagaagaagcatttgataaaattcaatattctttcataactaaaagaaactttcaacaaattaggtatagaagaaacatagcttaatgtaataaagataatgtatatcaagtccactgctattctcattatcagtgttggaaagctaaaagcttttcttccgatatcaggagcaagtcaaggaggcccactttcacaatttctcttcaatataattctgacattcctagctatagcaattacacaaaagaaataaataaaaggcatccagactaaaaaggaagaagtaaaattttctgtttgcagatgactggatcttacatctagaaaaccctaatgactacaccaaaaactgtgagaactaataaatttagttaagttcacaggatacaaaattaacttacaaaagccagttgcatttttacaacaatgatctatttgaataggaaatcaagaaaacaattctatttacaataatatcaaaggtaaataaaatacttagggataaatctaaccaagaaggtgaaagatctgtaccttgaaaactataaggcatggatgacagaaattgaaaaagatacaaataaatggaaagatattctttattcatggattggaagaattcatattgtcaaaatgctcatactttcctaagcaaactgtagattctttacaatccctatcaatattctaatggaatttttt
s panTro5.chr6             29658836 951 + 175400573 ctaataccaaagccagacaatgcaactataaggaaatgcagttacaggccaatatccctgatgaacatagatgcaaaaatcctcaatgaaaactagcaaaatgaattcaacagcacattaaaatgatcatacaccatgactaagtgggattcatccttaggatgcaagaatgggttaacatacacaaattaataaatatgatatgccacattaacatactgagggataaaaaccatatgataataggtgcagaagaagcatttgataaa-ttcaatattctttcataactaaaagaaactttcaacaaattaggtatagaagaaacatagcttaatgtaataaagataatgtatatcaactccactgctattctcattatcagtgttggaaagctaaaagcttttcttccaagatcaggagcaagtcaacgaggcccactttcacaatttctcttcaatataattctgacattcctagctatagcaattacacaaaagaaataaataaaatgcatccaaactaaaaaggaaaaagtaaaattttctgtttgcagatgacatgatcttacatctagaaaaccctaaagactacaccaaaaactgtgaggactaataaatttagttaagttcacaggatacaaaattaacttacaaaagccagttgcattttt-caacaatgatctatctgaataggaaatcaagaaaacaattctatttacaataatatcaaaggtaaataaaatacttagggataaatctaaccaagaaggtgaaacatctgtaccttgaaaactataaggcatggatgacagaaattgaagaagatacaaataaatggaaagatattctttattcatggattggaagaattcatattgtcaaaatgctcatactttcctaagcaaactatagattctttacaatccctatcaatattctaatggaatttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29897071 944 + 173848474 ctaataccaaagccagacaatgcaactataaggaaatgcagttacaggccaatatccctgatgaacatagatgcaaaaatcttcaatgaaaactagcaaaatgaattcaacagcacattaaaatgatcatacaccatgactaagtgggattcatccttaggatgcaagaatgggttaacatacacaaattaataaatatgatatgccacattaacatactgagggataaaaaccatatgataataggtgcagaagaagtatttgataaa-ttcaatattctttcataactaaaagaaactttcaacaaattaggtatagaagaaacatagcttaatgtaataaagataatgtatatcaactccactgctattctcattatcagtgttggaaagctaaaagcttttcttccaagatcaggagcaagtcaacgaggcccactttcacaatttctcttcaatataattctgacattcctagctatagcaattacacaaaagaaataaataaaacgcatcc-------aaaggaaaaagtaaaattttctgtttgcagatgacatgatcttacatctagaaaaccctaaagactacaccaaaaactgtgaggactaataaatttagttaagttcacaggatacaaaattaacttacaaaagccagttgcattttt-caacaatgatctgtctgaataggaaatcaagaaaacaattctatttacaataatatcaaaggtaaataaaatacttagggataaatctaaccaagaaggtgaaacatctgtaccttgaaaactataaggcatggatgacagaaattgaagaagatacaaataaatggaaagatattctttattcatggattggaagaattcatattgtcaaaatgctcatattttcctaagcaaactatagattctttacaatccctatcaatattctaatggaatttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5699916 953 +   6154872 ctaataccaaagccagacaatgcaactataaggaaatgcagttacaggccaatatccgtgatgaacatagatgcaaaaatcctcaatgaaaactagcaaaatgaattcaacagcacattaaaatgatcatacaccatgactaagtgggattcatccttaggatgcaagaatgggttaacatacacaaattaataaatatgatatgccacatcaacatactgagagataaaaaccataagataataggtgcagaagaagcatttgataaaatccagtattctttcataactaaaagaaactttcaacaaattaggtatagaagaaacatagcttaatgtaataaagataatgtatatcaagtccactgctattctcattatcagtgttggaaagctaaaagcttttcttccaatatcaggagcaagtcaaggaggcccactttcacaatttctcttcaatataattctgacattcctagctatagcaattacacaaaagaaataaacaaaaggcatccaaactaaaaaggaagaagtaaaattttctgtttgcagatgacatgatcttacatctagaaaaccctaatgactacaccaaaaactgtgagaactaataaatttagttaagttcacaggatacaaaattaacttacaaaagccagttgcatttttacaacaattatctatctgaataggaaatcaagaaaacaattctatttacaataatatcaaagataaataaaatacttagggataaatctaaccaagaaggtgaaagatctgtgccttgaaaactataaggcatggatgacagaaattgaagaagatacaaataaatggaaagatattctttattcatggattggaagaactcatattgtcaaaatgctcatactttcctaagcaaactatagattctttacaatccctatcaatattctaatggaatttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1    2574022 952 -   2996164 ctgataccaaagccagacaaggcaactataaggaaataaagttacagggcaatatccctgatgaacatagatgtaaaaatcctcaataaaaactagcaaaatgaattcaacagcacattaaaatgatcatgcaccatgactaagtgggattcatccttaggatgcaagaatgggttaacatacacaaattaataaatatgatatgccacattaacatactgagggataaaaaccatatgataataggtgcagaaaaagcatttgataaaattcaatattgtttcataactaaaagaaacttccaacaaattaggtatagaagaaacgtagcttaatataataaaggtaatgcatatcaagtccactgctattctcattatcaatgttggaaagctaaaagcttttcttccaagaccaggaacaagtcaaggaggctcacttttacaatttctcttcaatataattctgacattcctagatatagcaattacacaaaagaaagaaataaaaggcttcccaattaaaaaggaagaagt-aaattgtctgtttgcagatgaggtgatcttacatctagaaaacccaaaagactacaccagaaactgtgagaactaataaatttagttaagttcacaggatacaaaattaacatacaaaagccagttgcatttttacaacaatgatctatctgaataggaaatcaagaaaacaagtatatttacaataatgtcaaaggtaaacaaaatacttaggaataaatctaaccaagaaagtgaaagatctgtaccttgaaaactataaggcatggatgacagaaattgaagaagatacaaataaatgaaaagatattccttattcatgaattggaagaattcatattgtcaaaatgctcatacttctctcagcaaactacagattctttgcaatccctattaatattctaatggaatttttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     338218 946 +    766320 ctgataccaaagccagacaaggcaactataaggaaataaagttacagggcaatatccctgatgaacatagatgtaaaaatcctcaataaaaactagcaaaatgaattcaacagcacattaaaatgatcatgcaccatgactaagtgggattcatccttaggatgcaagaatgggttaacatacacaaattaataaatatgatatgccacattaacatactgaggtataaaaaccatatgataataggtgcagaaaaagcagttgataaaattcaatattgtttcataactaaaagaaacttccaacaaattaggtatagaagaaacgtagcttaatataataaaggtaacgcatatcaagtccactgctattctcattatcaatgttggaaagctaaaagcttttcttccacgaccaggaacaagtcaaggaggcccacttttacaatttctcttcaatataattctgacattcctagatatagcaattacacaagagaaagaaataaaaggcttccaaattaaaaaggaagaagt-aaattgtctgtttgcagatgaggtgatcttacatctagaaaacccaaaagactacaccagaaactgtgagaactaataaatttagttaagttcacaggatacaaaattaacatacaaaagccagttgcatttttacaacaatgatctatctgaataggaaatcaagaaaacaagtatatttacaataatgtcaaaggtaaacaaaatacttaggaataaatctaaccaa------gaaggatctgtaccttgaaaactataaggcatggatgacagaaattgaagaagatacaaataaatgaaaagatattccttattcatggattggaagaattcatattgtcaaaatgctcatacttctctcagcaaactacagattctttgcaatccctattaatattctaatggaatttttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28800827 953 -  71996105 ctaataccaaagccagacaaggcaactataaggaaataaagttacaggccaatatccctaatgaacatagatgtaaaaatcctcaatagaaactagcaaaatgaattcaacggcacattaaaatgatcatgcatcatgactaagtgggatttatccttaggatgcaagaatgggttaacatacacaaattaataaatatgatatgccacattaacatactgagggataaaaaccgtatgataataggtacagaaaaagcatttgataaaattcaatattgtttcataactaaaagaaacttccaacaaattagatatagaagaaatgtagcttaatataataaaggtaatgcctatcaagtccactgatattctcattatcaatgttggaaagctaaaagcttttcttccaagaccaggaacaagtcaaggaggcccacttttacaatttctcttcaatgtaattctgacattcctagatatagcaattacacaagagaaagaaataaaaggcttccaaattaaaaaggaagaattaaaattgtctgtttgcagatgaggtgatcttacatctagaaaacccaaaagactacaccaaaaactgtgagaactaataaatttagttaagttcacaggatacaaaattaacatacaaaagccagttgcatttttataacaatgatctatctgaataggaaatcaagaaaacaagtatatttacaataatgtcaaaggtaaacaaaatacttaggaataaatctaaccaagaaggtgaaagatctgtgccttgaaaactataaggcatggatgacagaaattgaagaagacacaaataaatgaaaagatattccttattcatggattggaagaattcatattgtcaaaatgctcatacttccctcagcaaactacagattctttgcaatctctattaatattctaatggaatttttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     310616 952 -    352859 ctgataccaaagccagacaaggcaactataaggaaataaagttacagggcaatatccctgatgaacatagatgtaaaaatccttaataaaaactagcaaaatgaattcaacagcacattaaaatgatcatgcaccatgactaagtgggattcatccttaggatgcaagaatgggttaacatacacaaattaataaatatgatatgccacattaacatactgagggataaaaaccatatgataataggtgcagaaaaagcatttgataaaattcaatattgtttcataactaaaagaaacttccaacaaattaggtatagaagaaacgtagcttaatataataaaggtaatgcatatcaagtccactgctattctcattatcaatgttggaaagctaaaagcttttcttcgaagaccaggaacaagtcaaggaggcccacttttacaatttctcttcaatataattctgacattcctagatatagcaattacacaagagaaagaaataaaaggcttccaaattaaaaaggaagaagt-aaattgtttgtttgcagatgaggtgatcttacatctagaaaacccaaaagactacaccagaaactgtgagaactaataaatttagttaagttcacaggatacaaaattaacgtacaaaagccagttgcatttttacaacaatgatctatctgaataggaaatcaagaaaacaagtatatttacaataatgtcaaaggtaaacaaaatacttaggaataaatctaaccaagaaggtgaaagatctgtaccttgaaaactataaggcatggatgatagaaattgaagaagatacaaataaatgaaaagatattccttattcatggattggaagaattcatattgtcaaaatgctcatacttctctcagcaaactacagattctttgcaatccctattaatatgctaatggaatttttt
i manLeu1.NW_012099655v1   C 0 I 917
s colAng1.NW_012115566v1    2413183 950 -   3067355 ctgataccaaaaccagacaaggcaactataaggaaataaagttacaggccaatatccctcatgaacatagatgtaaaaatcctcaataaaaaccagcaaaatgaattcaacagcacattaaaatgatcatgcaccatgactaagtgggattcatccttaggatgcaagaat-ggttaatatacacaaattaataaatatgatatgccacattaacatgctgagggataaaaaccatatgataataggtgcagaaaaagcatttgatacaattcaatattctttcataactaaaagaaacttccaacaaattaggtatagaagaaacgtagcttaatataataaaggtaatgcatatcaagtccaatgctattctcattatcaatgttggaaagctaaaagctcttcttccaagaccaggaacaagtcaaggaggcccacttttacaatttctctt--atataattctgacattcctagatatagcaattacacaagagaaagaaataaaaggcttccaaattaaaaaggaagaaggaaaattgtctgtttgcagatgagatgatcttacatctaggaagtcctaaagactacaccaaaaactgtgagaactaataaatttagttaagttcacaggatacaaaattaatatacaaaagccagttgcatttttacaacaatgatctatctgaataggaaatcaagaaaacaagcatatttataataatgtcaaagataaacaaaatacttaggaataaatctaaccaagaaggtgaaagatctgtaccttgaaaactataaggcattgatgacagaaattgaagaaggtacaaataaatgaaaagatattccttattcatggattggaagaattcatattgtcaaaatgcttatacttccctaagcaaactacagattctttgcaatccctatcaatattctaatggaatttttt
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57688272 72423 -  94987271 I
e dasNov3.JH569098           153084 39199 -    254539 I
e proCoq1.NW_012152574v1     416283 23693 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2087036 20327 -   2232465 I
e macFas5.chr4             29588817 7443 - 170955103 I
e rheMac8.chr4             29925175 7168 + 172585720 I

a score=1099105.000000
s hg38.chr6_GL000254v2_alt   686331 348 +   4827813 acagaaatagcaaaagtactaaaattcttatggaaccacaaaagactccaaatagcca-------------------------------aggctatcttgagcaaaaagaacaaagctggaggcacaactacctgaactcaaaatataccacaaagctatagtaatcaaaacagtatgatactggcataaaaacagatacatagaacaatggaacagaatagagagcccagaaataaatctatgtacttatggtcagttggtctttggcaaaggtgccaagaacatacaatgggaaaagaatagtttctccaataaattgtgttggaaaaacttaatattccacctaaagaagaatgaaattaaaccattgtctcaaac
s panTro5.chr6             29659787 347 + 175400573 acagaaatagcaaaagtactaaaattcttatggaaccacaaaagactccaaatagcca-------------------------------aggctatcttgagcaaaaagaacaaagctggaggcacaactatctgaactcaaaatatactacaaagctatagtaatcaaaacagtatgatactggcataaaaacagatacatagagcaatggaacacaatagagagcccagaaataaatctatgtacttatggtcagttggtctttggcaaaactgccaagaacatacaatgggaaaagaatagtttctccaataaattgtgttggaaaaacttaatat-ccacctaaagaagaatgaaattaaaccattgtctcaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29898015 347 + 173848474 acagaaatagcaaaagtactaaaattcttatggaaccacaaaagactccaaatagcca-------------------------------aggctatcttgagcaaaaagaacaaagctggaggcacaactatctgaactcaaaatatactacaaagctatagtaatcaaaacagtatgatactggcataaaaacagatacatagagcaatggaacacaatagagagcccagaaataaatctatgtacttatggtcagttggtctttggcaaagctgccaagaacatacaatgggaaaagaatagtttctccaataaattgtgttggaaaaacttaatat-ccacctaaagaagaatgaaattaaaccattgtctcaaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5700869 347 +   6154872 acagaaatagcaaaagtactaaaattcttatggaaccacaaaagactccaaatagcca-------------------------------aggctatcttgagcaaaaagaacaaagctggaggcacaactacctgaactcaaaatatactacaaagctatagtaatcaaaacagtatgatactggcataaaaacagatacatagaacaatggaacagaatagagagcccagaaataaatctatgtacttatggtcagttggtctttggcaaaggtgccaagaacatacaatgggaaaagaatagtttctccaataaattgtgttggaaaaacttaatat-ccacctaaagaagaatgaaattaaaccattgtctcaaac
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1    2574974 378 -   2996164 acagaaatagcaaaagtactgaaattcatatggaaccacaaaagactccaaatagccaaggctattttgaacacaaagaacaaagctagaggctatcttgagcaaaaagaacaaagctagaggcatgactacctgaaatcaaaatatactacaaatctatagtaatcaaaacagtatgatactggcataaaaacagatacgtagaacaatggaacagaatagagagcccagaaataaacctatgtatttatggtcagttggtccttggcaaaggttccaagaacatacaatgggaaaagaatagtctctccaataaattgtgttgggaaaacttaatat-ccacctaaagaagaatgaaattaaaccattgtctcaaac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     339164 378 +    766320 acagaaatagcaaaagtactgaaattcatatggaaccacaaaagactccaaatagccaaggctatcttgaacacaaagaacaaagctagaggctatcttgagcaaaaagaacaaagctagagacatgactacctgaaatcaaaatatactacaaatctatagtaatcaaaacagtatgatactggcataaaaacagatacgtagaacaatggaacagaatagagagcccagaaataaacctatgtatttatggtcagttggtccttggcaaaagttccaagaacatacaatgggaaaagaatagtctctccaataaatagtgttggaaaaacttaatat-ccacctaaagaagaatgaaattaaaccattgtctcaaac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28801780 376 -  71996105 acagaaatagcaaaaatactgaaattcatatggaaccacgaaagactccaaatagccaaggctatcttgaacacaaagaacaaagctagaggctatcttgagcaaaaagaacaaagctggaggcacgactacctgaaatcaaaatatactacaaatctatagtaatcaaaacagtatgatactggcataaaaacagatacatagaacaatggaacagaatagagagcccagaaataaacctatgtatttatggtcagttggtccttggcaaaggttccaagaacacacgatgggaaaagaatagtctcttcaataaattgtgttggaaaaac--aatat-ccatctaaagaagaatgaaattaaaccattgtctcaaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     312485 378 -    352859 acagaaatagcaaaagtactgaaattcatatggaaccacaaaagactccaaatagccaaggctatcttgaacacaaagaacaaagctagaggctatcttgagcaaaaagaacaaagctagaggcacgactacctgaaatcaaaatatactacaaatctatagtaatcaaaacagtatgatactggcataaaaacagatacgcagaacaatggaacagaatagagagcccagaaataaacctatgtatttatggtcagttggtccttggcaaagtttccaagaacatacaatgggaaaagaatagtctctccaataaattgtgttggaaaaacttaatat-ccacctaaagaagaatgaaattaaaccattgtctcaaac
i manLeu1.NW_012099655v1   I 917 C 0
s colAng1.NW_012115566v1    2414133 378 -   3067355 acagaaatagcaaaagtactaaaattcatatggaaccacaaaagactccaaatagccaaggctatcttgaacaaaaagaacaaagctagaggctatcttgagcaaaaagaacaaagctagaggcatgactacctgaaatcaaaatatactacaaatctatagtaatcaaaacagtatgatactggcataaaaacagatacatagaacaatggaacagactagagagcccagaaataaacctatgtatttatggtcagttggtctttggcaaaggttccaagaacatacaatgggaaaagaatagtctctccaataaattgtgttggaaaaacttaatat-ccaactaaagaagaatgaaattaaaccattttctcAAAC
i colAng1.NW_012115566v1   C 0 I 7657
e mm10.chr17               57688272 72423 -  94987271 I
e dasNov3.JH569098           153084 39199 -    254539 I
e proCoq1.NW_012152574v1     416283 23693 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2087036 20327 -   2232465 I
e macFas5.chr4             29588817 7443 - 170955103 I
e rheMac8.chr4             29925175 7168 + 172585720 I

a score=6744071.000000
s hg38.chr6_GL000254v2_alt   686679 2825 +   4827813 aatacgc-aaaaatcaatttaattggattaaaaactgaaaggcaagacctgaaact--aaaactactggaagaaaacagggaaaaacttctcaatggtggtctgggaaatgatatttttaaaatatcatacgtaaagcacaggaaacaaaatcaaaaataaatacgattctaccaaactaaatagttcctatttaacaaaagaaaacatcaacagaatgaagagataacctatgaaatgggaaaacaatatttcataaagagttaatatccaaaatataca---ttttttaaaaactcaatagcaagaaaacaaatagcctagtttaaaaatgaggaaagaatctaaatagacatttttt-caatgaaatagatatttccacacaaatggc---caagtgtattttttaatgttcaacatcattaaatcaaaggaaatacaaactacaaccacgagat-atcacttcac----atctgttagaatggcttttatcaaaaagacaaaaaataacaagtattaatgaggatataaaaagagaacctttgtacattgtttttgggaatttacatttgtacagccattatggggaacatatagagattcctcaaaaaacataaaggtagaaataccatatgattcagtaatcccacttctgggtatatgtctaaaggaaataaaatcagtatttcaaaaccaaacattgtatgttctcactgatatgtgggagctaagctataaggatgcaaatacataagaatgatacagtggacttaggggactt-ggggtgtagagtgggagggggggtgaaggataaaagactacaaatacggtgcagtgtatactgcttgggtgatgagtgcaccaaaatctcacaaatcaccactaaagaacttactcatgtaaccaaatactacttgtaccccaataacctatggaaaaataaaaaaaaaattagtatttcaaagacatatctgcactcttgtgttcattgcagcatgattctcaatagccaagatacagaattagcccaaaggtccatcaaaacagagaagtggatttaaaaatgtgacctatataatgtgcatatagcgtggtgattatagttaacaatactgtattatatacttgaaattttctaaactagaagatcataaatgttctcaccacacacatacaaaaggttgtaactatgtgaggtgatggatgtgttaattggcttaattgtggtaatcgtttcacaatgtatacatatctcaaaacatcacagtaaacatcataaatatatacaacttcatgtgtcagtcataccttaataaagttAAGAGGAAGAAAACGACCACCAAACCctctaggcaggggaatatatcaataggaactttaaaaactgaaaagcgaagaaaacaaagacttattaaagcagagaagaatattcaaggattctggaaaaactccaaaatatgtaatacatacaatgggaatatcagaaggagtagaaaagtagataggaacagaagaaatatttgaagcaataactgaaaatttccccaaattaatatgagacatcaaacttcaaatctaggaggctcaaggaataccaagaagcataaatgcc-agaaaaactatggctaggaatatcatttttaaactatggaaaattaaacaaaaatcagaaagtcaaaga-ttttttttaaatcatg-aagaagccagaggat-aaaaaataccatacctttagggaagaaaagatgacatctgagttcgcagaagctacaaaagttagaagaaaatagagtgaaatattt-aaaatttttgatagaagaaaaaccaatctagaattctgcactacatgaaattatccttcaaaagtgaatgagaaataaaccttctcagaggaacaaaaattgagggaatttattgccaatagacttgcctggtaaaaagtgataaaataaa-ttttttagagagtaataaaattatacaagtgagacatttcaatccacctttaagaacagaagagcattgaagaagaaataagtgaaagtaaaataaaaGAAAAAATATC-TAATTACGTATGCTTATGTAAgtgt---gtgtgtgtgtgtgt------------atgCTTTCATATGcttaggatggtttcataactttgctcttgtgaaaagtgctgcaattaacatacacatgcaggtgtcttgtttgtaccatgatttattttcctttgggtagatatctagtattgggattgctgaatcaaagggtagttctaattttagccctttaagaaatcttcatactgttttccatagaggttgtactaatttatattctcatcaacagtatataagcattcccttttctctgcattctcaccaacatctcttgtttttgactttttaataatagttactattactggtatgagatgatatctcagtgtggttttaatttgcacttctctgatgactagcaatgttgagcttttttt--atatgtttgtaggttttgtaggctgattgtatgtcttcttttaaatgtaagacctgaaactataaaaattttagaagaaaacctaggaaaaactcttctgaacattggcctaggcaaagaatttgtgactaagacctcaaaagcaaatgcaacaaaaataaaaatagacaaacagaacttaattaaactaaaaggcttctgcacagtgaagggaataatcaacagagtaaacaaacaacctacagaatgggaaaacatatttgcaaattatgcacctaatacgggactggtatccagaacttacaaggaacttaaacaactcaacaagaaaaacaaataaataaccccattaaaaagtggacaaagga
s panTro5.chr6             29660134 2832 + 175400573 aatacgc-aaaaatcaatttaattggattaaaaactgaaaggtaagacctgaaactgtaaaactactagaataaaacagggaaaaacttctcaatggtggtctgggcaatgatatttttaaaatatcatacgtaaagcacagaaaacaaaatcaaaaataaataggattctaccaaactaaatagttcctatttaacaaaaggaaacatcaacagaatgaagagacaacctatgaaatgggaaaacaatatttcataaagagttaatatccaaaatataca---ttttttaaaaactcaatagcaagaaaacaaatagcctagtttaaaaatgaggaaagaatctaaatagacatttttttcaatgaactagatatttccacacaaatggc---caagtgtattttttaatgttcaacatcattaaatcaaaggaaatacaaactacaaccacgagat-atcacttcac----atctgttagaatggcttttatcaaaaagacaaaagataacaagtattaatgagaatataaaaagagaacctttgtacattgtttttgggaatttacatttgtacaaccattatggagaacatatagagattcctcaaaaaacataaaggtagaaataccatatgattcagtaatcccacttctgggtat--gtctaaaggaaataaaatcagtatttcaaaaccaaacattgtatgttctcactggtatgtgggagctaagctataaggatgcaaatacataagaatgatacagtggacttaggggactt-ggggtgtagagtgggagggggggtgaaggataaaagactacaaatacggtgcagtgtatactgcttgggtgatgagtgcaccaaaatctcacaaatcaccactgaagaacttactcatgtaaccaaatactacctgtaccccaataacctatggaaaaatttaaaaaa--tgagtatttcaaagacatatctgcactcttgtgttcattgcagcatgattctcaatagccaagatatagaattagcccaaaggtccatcaaaacagagaagtggatttaaaaatgtgacctatataatgtgcatgtagcatggtgattatagttaacaatactgtattatatacttgaaattttctaaactagaagatcataaatgttctcaccacacacatacaaaaggttgtaactatgtgaggtgatgaatgtgttaattggcttaattgtggtaatcgtttcacaatgtatacatatctcaaaacatcacagtaaacatcataaatatatacaatttcatgtgtcagtcataccttaataaagctAAGAGGAAGAAAACGACCACCAAACCctctaagcatgggaatatatcaataggaactttaaaaactgaaaagcaaagaaaacaaagacttattaaagcagagaagaatattcaaggattctggaaaaactccaaaatatgtaatacatacaatgggaatatcagaaggagtagaaaagtagataggaacagaagaaatatttgaagcaataaattaaaatttccccaaattaatatgagacaccaaacttcaaatctaggaggctcaaggaataccaagaagcataaatgcc-agaaaaactatggctaggaatatcatttttaaactatggaaaattcaacaaaaatcagaaagtcaaaga-tttttttttaattatg-aagaagccagaggat-aaaaaataccatacctttaggaaagaaaagatgacatctgagttctcagaagccacaaaagttagaagaaaatagagtgaaatattt-aaaatttttgatagaagaaaaaccaatctagaattctgcactacgtgaaattatccttcaaaagtgaatgagaaataaaccttctcagaggaacaaaaattgagggaatttattgccaatagacttgcctggtaaaaagtgataaaataaa-ttttttagagagtaatacaattatacaagtgagacatttggatccacctttaagaacagaagagcattgaagaagaaataagtgaaagtaaaataaaaGAAAAAATGTC-TAATTCTGTATGCTTATGTACgtgt---gtgtgtgtgtgtgt----gtgtgtgtATGCTTTCATATGcttaggatggtttcataactttgctcttgtgaaaagtgctgcaattaacatacacatgcaggtgtcttttttgtaccatgatttattttcctttgggtagatatctagtattgggattgctgaatcaaacagtagttctaattttagctctttgagaaatcttcatactgttttccataaaggttgtgctaatttacattctcatcaacagtatataagcattccctttcctctgcattctcaccaacatctcttgtttttgactttttcataatagttattattactgttatgagatgatatctcagtgtggttttaatttgcacttctctgatgactagcaatgttgagcttttttt--ataggtttgtaggttttgtaggctgattttatgtcttcttttaaatgtaagacctgaaactataaaaattttagaagaaaacctaggaaaaactcttctggacattggcctaggcaaaggatttgtgactaagacctcaaaagcaaatgcaataaaaataaaaatagacaaacagaacttaattaaactaaaaggcttctgcacagtgaagggaataatcaacagagtaaacaaacaacctacagaatgggaaaacatacttgcaaactatgcacctaataggggactggtatccagaacttacaaggaacttaaacaactcaaccagaaaaacaaataaataaccccattaaaaagtgggcaaagga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29898362 2825 + 173848474 aatacac-aaaaatcaatttaattggattaaaaactgaaaggtaagacctgaaactgtaaaactactagaataaaacagggaaaaacttctcaatggtggtctgggcaatgatatttttaaaatatcatacgtaaagcacagaaaacaaaatcaaaaataaataggattctaccaaactaaatagttcctatttaacaaaaggaaacatcaacagaatgaagagacaacctatgaaatgggaaaacaatatttcataaagagttaatatccaaaatataca---ttttttaaaaactcaatagcaagaaaacaaatagcctagtttaaaaatgaggaaagaatctaaatagacatttttttcaatgaactagatatttccacacaaatggc---caagtgtattttttaatgttcaacatcattaaatcaaaggaaatacaaactacaaccacgagat-atcacttcac----atctgttagaatggcttttatcaaaaagacaaaagataacaagtattaatgagaatataaaaagagaacctttgtacattgtttttgggaatttacatttgtacaaccattatggagaacatatagagattcctcaaaaaacataaaggtagaaataccatgtgattcagtaatcccacttctgggtat--gtctaaaggaaataaaatcagtatttcaaaaccaaacattgtatgttctcactggtatgtgggagctaagctataaggatgcaaatacataagaatgatacagtggacttaggggactt-ggggtgtagagtggga-ggggggtgaaggataaaagactacaaatacggtgcagtgtatactgcttgggtgatgagtgcaccaaaatctcacaaatcaccactgaagaacttactcatgtaaccaaatactacctgtaccccaataacctatggaaaaatttaaaaaa--tgagtatttcaaagacatatctgcactcttgtgttcattgcagcatgattctcaatagccaagatatagaattagcccaaaggtccatcaaaacagagaagtggatttaaaaatgtgacctatataatgtgcatgtagcatggtgattatagttaacaatactgtattatatacttgaaattttctaaactagaagatcataaatgttctcaccacacacatacaaaaggttgtaactatgtgaggtgatgaatgtgttaattggcttaattgtggtaatcgtttcacaatgtatacatatctcaaaacatcacagtaaacatcataaatatatacaatttcatgtgtcagtcataccttaataaagctAAGAGGAAGAAAACGACCACCAAACCctctaagcatgggaatatatcaataggaactttaaaaactgaaaagcaaagaaaacaaagacttattaaagcagagaagaatattcaaggattctggaaaaactccaaaatatgtaatacatacaatgggaatgtcagaaggagtagaaaagtagataggaacagaagaaatatttgaagcaataaattaaaatttccccaaattaatatgagacaccaaacttcaaatctaggaggctcaaggaataccaagaagcataaatgcc-agaaaaactatggctaggaatatcatttttaaactatggaaaattcaacaaaaatcagaaagtcaaaga-tttttttttaattatg-aagaagccagaggat-aaaaaataccatacctttagggaagaaaagatgacatctgagttctcagaagccacaaaagttagaagaaaatagagtgaaatattt-aaaatttttgatagaagaaaaaccaatctagaattctgcactacgtgaaattatccttcaaaagtgaatgagaaataaaccttctcagagaaacaaaaattgagggaatttattgccaatagactttcctggtaaaaagtgataaaataaa-ttttttagagagtaataaaattatacaagtgagacatttggatccacctttaagaacagaagagtattgaagaagaaataagtgaaagtaaaataaaaGAAAAAATGTC-TAATTCTGTATGCTTATGTACgtgt---gtgtgtgtgtgtgt----------gtatgCTTTCATATGcttaggatggtttcataactttgctcttgtgaaaagtgctgcaattcacatacacatgcaggtgtcttttttgtaccatgatttattttcctttgggtagatatctagtattgggattgctgaatcaaacagtagttctaattttagctctttgagaaatcttcatactgttttccataaaggttgtgctaatttacattctcatcaacagtatataagcattccctttcctctgcattctcaccaacatctcttgtttttgactttttcataatagttattattactgttatgagatgatatctcagtgtggttttaatttgcacttctctgatgactagcaatgttgagcttttttt--ataggtttgtaggttttgtaggctgattttatgtcttcttttaaatgtaagacctgaaactataaaaattttagaagaaaacctaggaaaaactcttctggacattggcctaggcaaaggatttgtgactaagacctcaaaagcaaatgcaataaaaataaaaatagacaaacagaacttaattaaactaaaaggcttctgcacagtgaagggaataatcaacagagtaaacaaacaacctacagaatgggaaaacatatttgcaaactatgcacctaataggggactggtatccagaacttacaaggaacttaaacaactcaaccagaaaaacaaataaataaccccattaaaaagtgggcaaagga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5701216 2833 +   6154872 aatacgcaaaaaatcaatttaattggattaaaaactgaaaggtaagacctgaaactgtaaaactactagaagaaaacaaggaaaaacttctcaatggtggtctgggcaatga---ttttaaaatatcatacgtaaagcacaggaaacaaaataaaaaataaataggattctaccaaactaaatagttcctatttaacaaaagaaagcatcaacagaatgaacagacaacctatgaaatgggaaaacaatatttcataaagagttaatatccaaaatataca---ttttttaaaaactcaatagcaagaaaacaaatagcctagtttaaaaatgaggaaagaatctaaatagacatttttttcattgaaatagatatttccacacaaatggc---caagtgtattttttaatgttcaacatcattaaatcaaaggaaatacaaactacaaccacgagat-atcacttcac----atctgttagaatggcttttatcaaaaagacaaaagataacaagtattaatgagcatataaaaagagaacctttgtacattgtttttgggaatttacatttgtacagccattatggggaacatatagagattcctcaaaaaacataaaggtagaaataccatacgattcagtaatcccacttctgggtatatgtctaaaggaaataaaatcagtatttcaaaaccaaacattgtatgttctcactgatatgtgggagctaagctataagg-tgcaaatacataagaatgatacagtggacttaggggactt-ggggtgtagagtgg---ggggggtgaaggataaaagactacaaatacggtgcagtgcatactgcttgggtgatgagtgcaccaaaatctcacaaatcaccactaaagaacttactcatgtaaccaaatactacctgtaccccaataacctatggaaaaataaaaaaaa-attagtatttcaaagacgtatctgcactcttgtgttcattgcagcatgattctcaatagccaagatatagaattagcccaaaggtccatcaaaacagagaagtggatttaaaaatgtgacctatataatgtgcatatagcgtggtgattatagttaaaaatactgtattatatacttgaaattttctaaactagaagatcataaatgttctcaccacacacatacaaaaggttgtaactatgtgaggtgatggatgtgttaattggcttaattgtggtaatcgtttcacaatgtatacatatctcaaaacatcacagtaaacatcataaatatatacaacttcatgtgtcagtcataccttaataaagctAAGAGGAAGAAAACGACCACCAAACCctctaggcatgggaatatatcaataggaactttaaaaactgaaaagcgaagaaaacgaagacttattaaagcagagaagaatattcaaggattctggaaaaactccaaaatatgtaatacatacaatgggaatatcagaaggagtagaaaagtagataggaacagaagaaatatttgaagcaataactgaaaatttccccaaattaatatgagacatcaaacttcaaatctaggaggctcaaggaataccaagaagcataaatgcc-agaaaaactatggctaggaaaatcatttttaaactatggaaaattaaacaaaaatcagaaagtcaaagattttttttttaatcatg-aagaagccagaggat-aaaaaataccatacctttagggaagaaaagatgacatctgagttctcagaagccacaaaagttagaagaaaatagagtgaaatattt-aaaa-ttttgatagaagaaaaaccaatctagaattctgcactacgtgaaattatccttcaaaagtgaatgagaaataaaccttctcagaggaacaaaaattgagggaatttattgccaatagacttgcctggtaaaaagtgataaaataaa-ttttttagagagtaataaaattatgcaagtgagacatttggatccacctttcagaacagaagagcattgaagaagaaataagtgaaagtaaaataaaaGAAAAAATATC-CAATTACGTATGCTTATGTACAtgt---gtctgtgtgtgtgtgtgtgtgtgtgtatgCTTTCATATGcttaggatggtttcataactttgctcttgtgaaaagtgctgcaattaacatacacatgcaggtgtcttgtttgtaccatgatttgttttcctttgggtagatatctagtattgggattgctgaatcaaagggtagttctaattttagccctttaagaaatcttcataccgttttccatagaggttgtactaatttatattctcatcaacagtatataagcattcccttttctctgcattctcaccaacatctcttgtttttgactttttaataatagttactattactggtatgagatgatatctcagtgtggttttaatttgcacttctctgatgactagcaatgttgagcttttttt--atatgtttgtaggttttgtaggctgattgtgtgtcttcttttaaatgtaagacctgaaactataaaaattttagaagaaaacctaggaaaaactcttctgaacattggcctaggcaaagaatttgtgactaagacctcaaaagcaaatgcaacaaaaataaaaatagacaaacagaacttaattaaactaaaaggcttctgcacagtgaaaggaataatcaacagagtaaacaaacaacctacagaatgggaaaacatatttgcaaattatgcacctaataggggactggtatccagaacttacaaggaacttaaacaactcaacaagaaaaacaaataaataaccccattaaaaagtggacaaagga
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1    2575352 2830 -   2996164 gatatac-aaaaatcaatt--gtaaaatttgaaattgaaaggtaagacctgaaactgtaaaactactagaagaaaacagggaaaaactgcttaatggtggtctgggcgatgatatttttaaaatatcatacctaaagcacaggtaacaaaataaaaaataaataggattgtaccaaactaaatagttcctgtttaacaaaagaaaacatcaacagaatgaagagacaacctataaaatgggaaaataatatttcataaagagttaatatccaaaatataca---ttttttaaaaactcaatagcaagaaaac-aatagcctagtttaaaaatgaggaaagaatctaaatagacatttttt-cagtgaaatagatatttccacacaaatggccaacaagtgtatttattaatgttcaacatcattaaatcaaaggaaatacaaactacgaccacgaaataatcacttcac----atctgttagaaaggtttttatcaaaaagacaaaagataacaagtattaatgaggatataaaaagagaacctttgtacattgtttttgggaatttacatttgtacaaccattgttggggacatatggaggttcctcaaaaaacataaaggtagaaataccatctgattcagtaatcccacttctgggtatacatctaaaggaaataaaatcagtatttcaaaaccaaacattgtatgttctcactaatatgtgggagctaacctataaggatgcaaagacgtaagaatgatacagtggacttaggggactt-ggggtgtagagtggga-agggggtgaaggataaaagactacaagtacggtacagtgtatactgcttgggtgatgagtgtaccaaaatctcacaaatcaccactaaagaacttactcatgtaaccaaatactacctgtaccccaataacctatggaaaaatttaaaaaa--ttagtatatcaaagacatatctgcactcttgtgttcattgcagcatgattctcaatagccaagatatggaattagcttaaaggtccatcaaaacagagaagtggattaaaaaatgtgacctatataatgtgcatataacatggtgattata-ttaatagtactgtattatatgcttgaaattttctaaactagaagatcataaatgttctcaccacacacatacaaaaagttgtaactatgtgaggtgatggatgtgttaattgacttaattgtggtaatcgtttcacaatgtatacgtatctcaaaacatcacagtaaacatcataaatatacacaattttatgtgtcagtcataccttaataaaactAAGGGGAAGAAAACTACCACCAAACCctctaagcatgggaatatatcaataggaactttaaaaactgaaaagtgaagaaaacaaagacttattaaagcagagaagaatattcaaggattctgagaaaactccaaaatatgtaatacatacaatgggactatc---aggagtagaaaagtagatagaaaccaaagaaatatttgaaacaataactgaaaatttccccaaattaatatgagacaccaaacttcaaatctaggaggctcaaagaataccaagcagcacaaatgccaaaaaaaactatgtctagaaataccatttttaaactatggaaaattaaacaaaaatcagaaagtcaataa-tttttttgaaatcatgaaagaatccagaggat-aaaaaataccttacctttagggaagaaaagatgacatctgagttctcagaagccatgaaagttagaagaaaatagagtgaaatatttaaaaatttttgatagaagaaaaaccaatctagaattctgtattacatgaaattatctttcaaaggtgaatgagaaatagaccgtctcagaggaacaaaaattgagggaatttattgccaataaacttgcctggtaaaaagtgataaaataaa-ttttttagagagtaataaaattatacaagtgagaaatttggatctacctttaagaacagaagaggcttgaggaagaaataagttaaagtaaaatgaaaGAAAAAATGTCTTAATTATGTATGCATATGTACATATtgtgtgtgtgtgtgtgt----------gtgtgCTTTCATATGTttaagatggtttcataactttgctcttgtgaaaagtgctgcaattaacatacacatgcaggtgtcttttttataccatgatttgttttcctttgggtaggtatacagtattgggattgctgaatcaaagggtagttct-attttagctctttgagaaatcttcatactgttttccataaaggttgtactaatttgcattctcatcaacagtatataagcattcccttttctctgcattctcatcaacatctcttatttctgactgtttaataatagttattattactggtatgagatgatatctcactgtggttttaatttgcacttctctgatgactagcaatgttgagc-tttttaaaatatgtttttaggctttgtaggctgattgtttgtcttcttttaaatgtaagatccgaaactataaaacttttagaagaacacctaggaaaaactcttctggaccttggcctaggcaaagaatttgtgactaagacctcaaaagcaaatgcaacaaaaataaaaatagacaaacagagcttaatcaaactaaaaggcttctgcacagtgaagggaataatcaacagagtaaacaaacaacctacagaatgcgagaacatatttgcaaactatgcacctactaggggactggtatccagaacttacaaggaactcaaacaactcaacaagaaaaataaataaataaccccattaaaaagtggacaaaggT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     339542 2832 +    766320 gatatac-aaaaatcaacttaattggattaaaaattgaaaggtaagacctgaaactgtaaaactactagaagaaaacagggaaaaactgcttaatggtggtctgggcaatgatatttttaaaatatcatacctaaagcacaggtaacaaaatcaaaaataaataggattgtaccaaactaaatagttcctgtttaacaaaagaaaacatcaacagaatgaagagacaacctatgaaatgggaaaataatatttcataaagagttaatatccaaaatataca---tttttaaaaaactcaatagcaagaaaacaaatagcctagtttaaaaatgaggaaagaatctaaatagacatttttt-cagtgaaatagatatttccacacaaatggccaacaagtgtatttattaatgttcaacatcattaaatcaaaggaaatacaaactacgaccacgaaataatcacttcac----atctgttagaaaggtttttatgaaaaagacaaaagataacaagtattaatgaggatataaaaagagaacctttgtacattgtttttgggaatttacatttgtacaactattgtggggtacatatggaggttcctcaaaaaacataaaggta-aaataccatctgattcagtaatcccacttcagggtatacatttaaaggaaataaaatcagtatttcaaaaccaaacattgtatgttctcactaatatgtgggagctaacctataaggatgcaaagacataagaatgatacagtggacttaggggactt-ggggtgtagagtggga-agggggtgaaggataaaagactacaagtacggtacagtgtatactgcttgggtgatgagtgcaccaaaatctcacaaatcaccactaaagaacttactcatgtaaccaaatactacctgtaccccaataacctatggaaaaatttaaaaaa--ttagtatttcaaagacatatctgcactc--gtgttcattgcagcatgattctcaatagccaagatatggaattagcttaaaggtccatcaaaacagagaagtggattaaaaaatgtgacctatataatgtgcatataacatggtgattatagttaatagtactgtattatatgcttgaaattttctaaactagaagatcataaatgttctcaccacacacatacaaaaagttgtaactatgtgaggtgatggatgtgttaattggcttaattgtggtaatcgtttcacaatgtatacgtatctcaaaacatcacagtaaacatcataaatatacacaattttatgtgtcagtcatacctgaataaaactAAGGGGAAGAAAACTACCACCAAACCctctaagcatgggaatatatcaataggaactttaaaaactgaaaagcgaagaaaacaaagacttattaaagcagagaagaatattcaaggattctgagaaaactccaaaatatgtaatacatacaatgggaatatc---aggagtagaaaagtagatagaaaccaaagaaatatttgaaacaataactgaaaatttccccaaattaatatgagacaccaaacttcaaatccaggaggctcaaagaataccaagcagcataaatgccaaaaaaaactatgtctagaaataccatttttaaactatggaaaattaaacaaaaatcagaaagtcaataa-tttttttgaaatcatgaaagaatccagaggat-aaaaaataccttacctttagggaagaaaagatgacatctgagttctcagaagccatgaaagttagaagaaaatagagtgagatatttaaaaatttttgatagaagaaaaaccaatctagaattctgtattacatgaaattatctttcaaaggtgaatgagaaatagaccgtctcagaggaacaaaaattgagggaatttattgccaataaacttgcctggtaaaaagtgataaaataaa-ttttttagagagtaataaaattatacaagtgagaaatttggatctacgtttaagaacagaagaggcttgaggaagaaataagctaaagtaaaataaaaGAAAAAATGTCTTAATTATGTATGCGTATGTACATATTTtgtgtgtgtgtgtgt----------gtgCGCTTTCATATGTttaagatggtttcataactttgctcttgtgaaaagtgctgcaattaacatacacatgcaggtgtcttttttataccatgatttgttttcctttgggtaggtatacagtattgggaatgctgaatcaaagggtagttct-attttagctctttgagaaatcttcatactgttttctataaaggttgtactaatttgcattctcatcaacagtatataagcattcccttttctctgcattctcatcaacatctcttgtttctgactgtttaataatagttattattactggtatgagatgatatctcactgtggttttaatttgcacttctctgatgactagcaatgttgagcttttttttaatatgtttttaggctttgtaggctgattgtttgtcttcttttaaatgtaagatccgaaactataaaacttttagaagaacacctaggaaaaactcttctggaccttggcctaggcaaagaatttgtgactaagacctcaaaagcaaatgcaacaaaaataaaaatagacaaacagagcttaatcaaactaaaaggcttctgcacagtgaagggaataatcaacagagtaaacaaacaacctacagaatgggagaacatatttgcaaactatgcacctactaggggactggtatccagaacttacaaggaactcaaacaactcaacaagaaaaataaataaataaccccattaaaaagtggacaaagga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28802156 2839 -  71996105 gatatac-aaaaatcaacttaattggattaaaaattgaaaggtaagacctgaaactgtaaaactactagaagaaaacagggaaaaactgcttaacggtggtctgggcaatgatatttttaaaatatcatacctaaagcacaggtaacaaaatcaaaaataaataggattgtaccaaactaaatagttgctatttaacaaaagaaaacatcaacagaatgaagagacaacctatgaaatgggaaaataatatttcataaagagttaatatccaaaatatacatttttttttaaaaactcaatagcaagaaaacaaatagcctagtttaaaaatgaggaaagaatctaaatagacatttttt-cagtgaaatagatagttccacacaaatggccaacaagtgtatttattaatgttcaagatcattaaatcaaaggaaatacaaactacaaccacgaaataatcacttcacgtgaatctgttagaaaggtttttatcaaaaagacaaaagataacaagtattaatgaggatataaaaagagaacctttgtacatcgtttttgggaatttacatttgtacagccattgtgggggacatatggaggttcctcaaaaaacataaaggtagaaataccgtctgattcagtaatcccacttctgggtatacatctaaaggaaataaaatcagtatttcaaaaccaaacattgtatgttctcactaatatgtgggagctaacctataaggatgcaaagacgtaagaatgatacagtggacttaggggactt-ggggtgtagagtggga-agggggtgaaggataaaagactacaagtacggtacagtgtatactgcttgggtgatgagtgcaccaaaatctcacaaatcaccacgaaagaacttactcatgtaaccaaatactacctgtaccccaataacctatggaaaaaatgtaaaaa--ttagtatttcaaagacatatttgcactcttgtgttcattgcagcatgattctcaatagccaagatatggaattagcttaaaggtccatcaaaacagagaagtggattaaaaaatgtgacctatataATGTGCAtataacatggtgattatagttaatagtactgtattatatgcttgaaattttctaaactagaagaccacaaatgttctcaacacacacatacaaaatgttgtaactatgtgaggtgatggatgtgttaattggcttaattgtggtaatcgtttcacaatgtatacgtatctcaaaacatcacagtaaacatcataaatatacacaattttacgtgtcagtcataccttaataaaactgAGGGGAAGAAAACTACCACCAAACCctctaagcatgggaatatatgaataggaactttaaaaactgaaaagtgaagaaaacaaagacttattaaagcagagaagaatattcaaggattctgagaaaactccaaaatatgtaatacatgcaatgggaatatc---aggagtagaaaagtagatagaaaccaaataaatatttgaaacaataactgaaaatttccccaaattaatatgagacaccaaacttcaaatctaggaggctcaaagaataccaagcagcataaatgccaaaaaaaactatgtctagaaatatcatttttaaactatggaaaattaaacaaaaatcagaaagtcaatga-tttttttgaaatcatgaaagaatccagaggataaaaaaataccttacctttagggaagaaaagatgacatctgagttctcagaagccatgaaagttagaagaaaatagagtgaaatattt-aaaatttttgatagaagaaaaaccaatctagaattctgtattacatgaaattatctttcaaaggtgaatgagaaatagaccgtctcagaggaacaaaaattgagggaatttattgccaataaacttgcctggtaaaaagtgataaaataaatttttttagtgagtaacaaaattatacaagtgagaaatttggatccacctttaagaatagaagaaccttgaggaagaaataagctaaagtaaaataaaagaaaaaatgtcttaattacgtatgcgtatgtacatat----tgtgtgtgtgtgt----------gtgtgctttcatatgcttaggatggtttcataactttgctcttgtgaaaagtgctgcaattaacatacacatgcaggtgtcttttttataccatgatttgttttcctttgggtagatatacggtattgggattgctgaatcaaagggtagttct-attttagctctttgagaaatcttcatactgttttccataaaggttgtactaatttgcattctcatcagcagtgtataagcattcccttttctctgcattctcatcaacatctcttgtttctgactgtttaataatagttattattactggtatgagatgatatctcactgtggttttaatttgcacttctctgatgactagcaatgttgagctttttttttatatgtttgtaggctttgtaggctgattgtatgtcttcttttaaatataagatccgaaactataaaacttttagaagaaaacctaggaaaaactcttctggaccttggcctaggcaaagaatttgtgactaagacctcaaaagcaaatgcaacaaaaataaaaatagacaaacagagcttaatcaaactaaaagacttctgcacagtgaagggaataatcaatagagtaaacaaacaacctatagaatgggagaacatatttgcaaactatgcacctaataggggactggtatccagaacttacaaggaacacaaacaactcaacaagaaaaataaataaataaccccattaaaaagtcgacaaagga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     312863 2837 -    352859 gatatac-aaaaatcaacttaattggattaaaaattgaaaggtaagacctgaaactgtaaaactactagaagaaaatggggaaaaactgcttaatggtggtctgggcaatgatatttttaaaatagcatacctaaagcacaggtaacaaaatcaaaaataaataggattgtaccaaactaaatagttcctgtttaacaaaagaaaacatcaacagaatgaagagacaacctatgaaatgggaaaataatatttcataaagagttaatatctaaaatataca--tttttttaaaaactcaatagcaagaaaacaagtagcccagtttaaaaatggggaaagaatctaaatagacgtttttt-cagtgaaatagatatttccacacaaatggccaacaagtgtatttattaatgttcaacatcattaaatcaaaggaaatacaaactacaaccacgaaataatcacttcac----atctgttagaaaggtttttatcaaaaagacaaaagataacaagtattaatgaggatataaaaagagaacctttgtacattgtttttgggaatttacatttgtacaaccattgtgggggacatatggaggttcctcaaaaaacataaaggtagaaataccgtctgattcagtaatcccacttctgggtatacatctaaaggaaacaaaatcagtatttcaaaaccaaacattgtatgttctcactaatatgtgggagctaacctataaggatgcaaagacataagaatgatacagtggacttaggggacttgggggtgtagagtggga-agggggtgaaggataaaagattacaagtacggtacagtgtatactgcttgggtgatgagtgcaccaaaatctcacaaatcaccactaaagaacttactcatgtaaccaaatactacctgtaccccaataacctatggaaaaattttaaaaa--ttagtatttcaaagacatatctgcactcttgtgttcattgcagcatgattctcaatagccaagatatggaattagcttaaaggtccatcaaaacagagaagtggattaaaaaatgtgacctatctaatgtgcatataacatggtgattatagttaatagtactgtattatatgcttgaaatattctaaactagaagatcataaatgttctcaccacacacatacaaaaagttgtaactatgtgaggtgatggatgtgttaattggcttaattgtggtaatcgtttcacaatgtatacgtatctcaaaacatcacagtaaacatcataaatatacacaattttatgtgtcagtcataccttaataaaactAAGGGGAAGAAAACTACCACCAAACCctctaagcatgggaatatatgaataggaactttaaaaactgaaaagcgaagaaaacaaagacttattaaagcagagaagaatattcaaggattctgagaaaactccaaaatatgtaatacatacaatgggaatatc---aggagtagaaaagtagatagaaaccaaagaaatatttgaaacaataacagaaaatttccccaaattaatatgagacaccaaacctcaaatctaggaggctcaaagaataccaagcagcataaatgccaaaaaaaactatgtctagaaataccatttttaaactatggaaaattaaacaaaaatcagaaagtcaataa-tttttttgaaatcatgaaagaatccagaggat-aaaaaataccttacctttagggaagaaaagatgacatctgagttctcagaagccatgaaagttagaagaaaatagagtgaaatatttaaaaatttttgatagaagaaaaaccaatctagaattctgtattacatgaaattatctttcaaaggtgaatgagaaatagaccgtctcagaggaacaaaaattgagggaatttattgccaataaacttgcctggtaaaaagtgataaaataaa-ttttttagagagtaataaaattatataagtgagaaatttggatctacctttaagaacagaagaggcttgaggaagaaataagctaaagtaaaataaaaGAAAAAATGTCTTAATTATGTATGCATATGTACATATTTtgtgtgtgtgtgtgt----------gtgtgCTTTCATATGTttaagatggtttcataactttgctcttgtgaaaagtgctgcaattaacatacacatgcaggtgtcttttttataccatgatttgttttcctttgggtaggtatacagtattgggattgctgaatcaaagggtagttct-attttagctctttgagaaatcttcatactgttttccataaaggttgtactaatttgcattctcatcaacagtatataagcattcccttttctctgcattctcatcaacatctcttgtttctgactgtttaataatagttattattactggtatgagatgatatctcactgtggttttaatttgcacttctctgatgactagcaatgttgagctttttttaaatatgtttttaggctttgtaggctgattgtttgtcttcttttaaatgtaagatccgaaactataaaacttttagaagaacacctaggaaaaactcttctggaccttggcctaggcaaagaatttgtgactaagacctcaaaagcaaatgcaacaaaaataaaaatagacaaacagagcttaatcaaactaaaaggcttctgcacagtgaagggaataatcaacagagtaaacaaacaacctacagaatgggagaacatatttgcaaactatgcacctactaggggactggtatccagaacttacaaggaactcaaacaactcaacaagaaaaataaataaataaccccattaaaaagtggacaaagga
i manLeu1.NW_012099655v1   C 0 C 0
e mm10.chr17               57688272 72423 -  94987271 I
e dasNov3.JH569098           153084 39199 -    254539 I
e proCoq1.NW_012152574v1     416283 23693 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2087036 20327 -   2232465 I
e colAng1.NW_012115566v1    2414511 7657 -   3067355 I
e macFas5.chr4             29588817 7443 - 170955103 I
e rheMac8.chr4             29925175 7168 + 172585720 I

a score=61441.000000
s hg38.chr6_GL000254v2_alt   689504 22 +   4827813 aatTTTTGTATTTAGTATATGC
s panTro5.chr6             29662966 22 + 175400573 aatTTTTGTATTTTGTATATGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29901187 22 + 173848474 aatTTTTGTATTTTGTATATGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5704049 22 +   6154872 aatTTTTGTATTTAGTATATGC
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1    2578182 22 -   2996164 AATTTTTGTATTTTGTATATGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     342374 22 +    766320 aatTTTTGTATTTTGTATATGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28804995 22 -  71996105 aatTTTTATATTTTGTATATGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     315700 22 -    352859 aatTTTTGTATTTTGTATATGC
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2107363 22 -   2232465 AATAGTTATATTTTGAGTATGT
i otoGar3.GL873742         I 20327 C 0
e mm10.chr17               57688272 72423 -  94987271 I
e dasNov3.JH569098           153084 39199 -    254539 I
e proCoq1.NW_012152574v1     416283 23693 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2414511 7657 -   3067355 I
e macFas5.chr4             29588817 7443 - 170955103 I
e rheMac8.chr4             29925175 7168 + 172585720 I

a score=120725.000000
s hg38.chr6_GL000254v2_alt   689526 34 +   4827813 TTGAAATGTTTGTATTTTAAAATGTCAAAAGAAA
s panTro5.chr6             29662988 34 + 175400573 TTGAAATGTTTGTATTTTAAAATGTCAAAAGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29901209 34 + 173848474 TTGAAATGTTTGTATTTTAAAATGTCAAAAGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5704071 34 +   6154872 TTGAAATGTTTGTATTTTAAAATGTCAAAAGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1    2578204 34 -   2996164 TTGAAATGTTTGTATTTTAAAACGTCAAAAGAAA
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012002711v1     342396 34 +    766320 TTGAAATGTTTGTATTTTAAAACGTCAAAAGAAA
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17            28805017 34 -  71996105 TTGAAATGTTTGTATTTTAAAACGTTGAAAGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     315722 34 -    352859 TTGAAATGTTTGTATTTTAAAACGTCAAAAGAAA
i manLeu1.NW_012099655v1   C 0 I 2624
s proCoq1.NW_012152574v1     439976 34 +    730504 TTGAAATGTTTGTAATTTAAAAAGTAAACAGAAA
i proCoq1.NW_012152574v1   I 23693 C 0
s otoGar3.GL873742          2107385 34 -   2232465 TTGAAATGTTTGCAATTTTAAAATTAAAAAGAAA
i otoGar3.GL873742         C 0 C 0
e mm10.chr17               57688272 72423 -  94987271 I
e dasNov3.JH569098           153084 39199 -    254539 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2414511 7657 -   3067355 I
e macFas5.chr4             29588817 7443 - 170955103 I
e rheMac8.chr4             29925175 7168 + 172585720 I

a score=791533.000000
s hg38.chr6_GL000254v2_alt   689560 230 +   4827813 AAAAAATTAGTACCTAACATTATCCTTTCGCACTGTGCCAAGAGTAGACATTCATTATA-GTGCTTTTACATCTGTGAACACCCCCACTACATTGTGATCATTTCCTAGATTCCTTAACAGCTGGTAACAACCATGGAAATTAGGTCCTACCAATCAGCAAGACTATGCATGTGGAATTCAGTCTTCTCTGCATGAAACAGAGGAATCTGGTCCTTCTGGAGCATCAGTGA
s panTro5.chr6             29663022 230 + 175400573 TAAAAATTACTACCTGACATTATCCTTTCGCACTGTGCCAAGAGTAGACATTCATTATA-GTGCTTTTACATCTGTGAACACCCCCACTACATTGTGATCATTTCCTAGATTCCTTAACAGCTGGTAACAACCATGGAAATTAGGTCCTACCAATCAGCAAGACTATGCATGTGGAACTCAGTCTTCTCTGCATGGAACAGACGAATCTGGTCCTTCTGGAGCATCAGTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29901243 230 + 173848474 TAAAAATTAGTACCTGACATTATCCTTTCGCACTGTGCCAAGAGTAGACATTCATTATA-GTGCTTTTACATCTGTGAACACCCCCACTACATTGTGATCATTTCCTAGATTCCTTAACAGCTGGTAACAACCATGGAAATTAGGTCCTACCAATCAGCAAGACTATGCATGTGGAACTCAGTCTTCTCTGCATGGAACAGACGAATCTGGTCCTTCTGGAGCATCAGTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5704105 230 +   6154872 TAAAAATTAGTACCTAACATTATCCTTTTGCACTATGCCAAGAATAGACATTCATTATA-GTGCTTTTACATCTGTGAACACCCCCACTACATTGTGATCATTTCCTAGATTCCTTAACAGCTGGTAACAACCATGGAAATTAGGTCCTACCAATCAGCAAGACTATGCACGTGGAACTCAGTCTTCTCTGCATGAAACAGAGGAATCTGGTCCTTCTGGAGCATCAGTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1    2578239 230 -   2996164 AAAAAATTAGTACCTAACATTATCCTTTCATATTCTGCCAAGAGTAGACATTCATTATA-GTGCTTTTACATCTGTGAACACCCCCACTACATTGTGATCATTTCCTAGATTCCTTAACAGCTGGTAGCAACCATGGAAATTAGGTCCTACCTATCAGCAAGACCATGCATATGAAACTCAGTCTTCTCTGCATGGAACAAAGGAATCTGGTCCTTCCGGAGCATCAATGA
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1     342431 230 +    766320 AAAAAATTAGTACCTAACATTATCCTTTCATATTCTGCCAAGAGTAGACATTCATTATA-GTGCTTTTACATCTGTGAACACCCCCACTACATTGTGATCATTTCCTAGATTCCTTAACAGCTGGTAGCAACCATGGAAATTAGGTCCTACCTATCAGCAAGACCATGCATATGAAACTCAGTCTTCTCTGCATGGAACAAAGGAATCTGGTCTTTCCAGAGCATCAATGA
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17            28805051 230 -  71996105 TAAAAATTAGTACCTAACATTATCCTTTCATACTCTGCCAAGAGTAGACATTCATTATA-GTGCTTTTACATCTGTGAACACCCCCACTACATGGTGATCATTTCCTAGATTCCTTAACAGCTGGTAGCAACCATGGAAATTAGGTCCTACCTATCAGCAAGACCATGCATATGAAACTCAGTCTTCTCTGCATGGAACAGAGGAATCTGGTCCTTCTGGAGCATCAATGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     318380 230 -    352859 AAAAAATTAGTACCTAACATTATCCTGTCATATTCTGCCAAGAGTAGACATTCATTATA-GTGCTTTTACATCTGTGAACACCCCCACTACATTGTGATCATTTCCTAGATTCCTTAACAGCTGGTAGCAACCATGGAAATTGGGTCCTACCTATCAGCAAGACCATGCATATGAAACTCAGTCTTCTCTGCATGGAACAAAGGAATCTGGTCTTTCCGGAGCATCAGTGA
i manLeu1.NW_012099655v1   I 2624 C 0
s proCoq1.NW_012152574v1     440010 229 +    730504 TAGAAATTAGTATCCCACATTACCCTTTCACACTCTGCCACGAGTAGATGTTCGTTATCTGTGTCTTCACATCTGTGAGC-CCCTCACCACACTGTGATCATTTCCTAGATTCCCCGGCAGCTGGCAGCAAGCGTGGGAATAAGTTTCTACCAGTCAGCGACACCACGCATGTGGAACTCAGTCTTCTCTGCCTGGGACA-AGGAATCTGGTTCTTCTGGGGCATCAGTGA
i proCoq1.NW_012152574v1   C 0 I 9182
s otoGar3.GL873742          2107419 231 -   2232465 CAGAAATTAGTATCCAATATCACTCTTTCATACTCTGTGAAGAGCAAACATTCATTATCTGTATCTTAACATCTGTGAACACTCTCACTACACAGTGACAATTTCCTAGATCCCCTAGCAGCGGGGAGCAAGCATATAAATTAGGTTTTACCAATGAGCAATACTACACATGTGGAACTCAGTCTTTTCTGCATAGGACAGAGGAATATGGTTCTTCCGGGGTATAGATAA
i otoGar3.GL873742         C 0 C 0
e mm10.chr17               57688272 72423 -  94987271 I
e dasNov3.JH569098           153084 39199 -    254539 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2414511 7657 -   3067355 I
e macFas5.chr4             29588817 7443 - 170955103 I
e rheMac8.chr4             29925175 7168 + 172585720 I

a score=769698.000000
s hg38.chr6_GL000254v2_alt   689790 294 +   4827813 TGGATCTAG-----------AAGTACTCTAGGG--TTGAGTAATGATGGCAGTGATATTTACGCCAACAAGAGACCCTCTgtgtttctgcatctcattcctggcagaataattcagagtctgactctctttacctacaggatagtgtgtgagctatcaaatattatataagaaaaaacagcagcttaaattagccagggtagcttatgttgtt-tgcaa------ctgaaaccACACCAAGAAAATTCAC---TTCTCTCAATTACTCACTCCTGATTTTAGTTACATATGCACACAGACACACAGAATAGAGCCtg
s panTro5.chr6             29663252 294 + 175400573 TGGATCTAG-----------AAGTACCCTAAGG--TTGAGTAATGATGGCAGTGATATTTATGCCAACAAGAGGCCCTCTGTGTTTCCTCATCTCAttcctggcagaataattcagagtctgactctctttacctacaggatagtgtgtgagctatcaaatattatataagaaaaaacagcagcttaaattagccaaggtagattatgttgtt-tgcaa------ctaaaaCGAAACCAAGAAAATTCAC---TTCTCTCAATTGCTCACTCCTAATTTTAGTTACATATGCACACAGACACACAGAATAGAGCTtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29901473 294 + 173848474 TGGATCTAG-----------AAGTACCCTAAGG--TTGAGTAATGATGGCAGTGATATTTATGCCAACAAGAGGCCCTCTGTGTTTCCTCATCTCAttcctggcagaataattcagagtctgactctctttacctacaggatagtgtgtgagctatcaaatattatataagaaaaaacagcagcttaaattagccaaggtagattatgttgtt-tgcaa------ctaaaaCGAAACCAAGAAAATTCAC---TTCTCTCAATTGTTCACTCCTAATTTTAGTTACATATGCACACAGACACACAGAATAGAGCTtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5704335 294 +   6154872 TGGATCTAG-----------AAGTACTCTAGGG--TTGAGTAATGATGGCAGTGATATTTACGCCAACAAGAGGCCCTCTgtgtttctgcatctcattcctggcagaataattcagagtctgactctctttacctacaggatagtgtgtgagctatcaaatattatataagaaaaaacagcagcttaaattagccagcgtagcttatgttgtt-tgcaa------ctgaaaccACACCAAGAAAATTCAC---TTCTCTCAATTACTCACTCCTAATTTTAGTTACATATGCACACAGACACACAGAATAGAGCCtg
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1    2578469 284 -   2996164 TGGAGCTAG-----------AAGTACCCTAGGG--TTGAGTAACGATGGCAGTGATATTTACTCCAACAAGAGGCCC--------TCTGCATCTCAttcctggcagaataattc--agtctgcctctctttacctacaggatattgtgtgagctaccaaatattatataagaaaaaacagcagcttaaattagccaaggtggattatgttgct-tgcaa------ctaaaaccACACCAAGAAAATTCAC---TTCTCTCAATTACTCACTCCTAATTTTAGTTACATATGCACACAGACACATAGAATAGAGCCtg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     342661 292 +    766320 TGGAGCTAG-----------AAGTACCCTAGGG--TTGAGTAACGATGGCAGGGATATTTACTCCAACAAGAGGCCCTCTgtgtttctgcatctcattcctggcagaataattc--agtctgcctctctttacctacaggatattgtgtgagctaccaaatattatataagaaaaaacagcagcttaaattagccaaggtggattatgttgct-tgcaa------ctaaaaccACACCAAGAAAATTCAC---TTCTCTCAATTACTCACTCCTAATTTTAGTTACATATGCACACAGACACATAGAATAGAGCCtg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28805281 290 -  71996105 TGGAGCTAG-----------AAGTACCCTAGGG--CTGAGTAACGATGGCAGTGATATTTACTCCAACAAGAGGCCCTCTgtgtttctgcatctcattcctggcagaataattc--agtctgcctctc--tacctacaagatagtgtgtgagctaccaaatattatataagaaaaaacagcagcttaaattagtcaaagtgggttatgttgct-tgcaa------ctaaaagcACACCAAGAAAATTCAC---TTCTCTCAATTACTCACTCCTAATTTTAGTTACATATGCATACAGACACATAGAATAGAGCCtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     318610 292 -    352859 TGGAGCTAG-----------AAGTACCCTAGGG--TTGAGTAACGATGGCAGTGATATTTACTCCAACAAGAGGCCCTCTgtgtttctgcatctcattcctggcagaataattc--agtctgcctctctttacctacaggatattgtgtgagctaccaaatattatataagaaaaaacagcagcttaaattagccaaggtggattatgttgct-tgcaa------ctaaaaccACACCAAGAAAATTCAC---TTCTCTTAATTACTCACTCCTAATTTTAGTTACATATGCACACAGACACATAGAATAGAGCCtg
i manLeu1.NW_012099655v1   C 0 C 0
s otoGar3.GL873742          2107650 296 -   2232465 CAGTTCTAGAATTTAGTTTCAAATATCCTAAAAATCTGAATCCTAATAGCAGTGATATTTTCTCCAAT--GAGGCC--------TCTTGGAGTTTATTCCTAGAAGGATAATTCAGAGTCTCATTCTCTTTACCCCCAGGATAGCCTTTAAGCTACCAAATATTAT-----AAATAACATCAGCTTAAATTAGCCAAGATGTATTATGTTATTATGCAAACACTCCTAAAAC---ACCA--AAAACCCACCCTTCCTCTTAATGACTGACTCTTCATTTCAATTATACACACA-AAGGAAACATAGAATGAAGCCTG
i otoGar3.GL873742         C 0 I 3907
e mm10.chr17               57688272 72423 -  94987271 I
e dasNov3.JH569098           153084 39199 -    254539 I
e proCoq1.NW_012152574v1     440239 9182 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2414511 7657 -   3067355 I
e macFas5.chr4             29588817 7443 - 170955103 I
e rheMac8.chr4             29925175 7168 + 172585720 I

a score=299512.000000
s hg38.chr6_GL000254v2_alt   690084 125 +   4827813 atatggtttcg-ttttatgtccccacacaaatctcatctcaattgtaatctcccatgtcaagggagggacctggagggaagtgatttcatcatgggggaactttcccccacgctgttctcctgaca
s panTro5.chr6             29663546 125 + 175400573 atatggtttgg-ttttttgtccccacccaaatctcatctcaattgtaatctcccatgtcaagggagggacctggagggaagtgatttcatcatgggggaagtttcccccacgctgttctcatgaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29901767 126 + 173848474 atatggtttggtttttttgtccccacccaaatctcatctcaattgtaatctcccatgtcaagggagggacctggagggaagtgatttcatcatgggggaagtttcccccatgctgttctcatgaCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5704629 125 +   6154872 atatggtttgg-ttttgtgtccccacccaaatctcatctcaattgtaatctcccatgtcaagggagggacctggagggaagtgatttcatcatgggggaagtttcccccatgctgttctcatgaca
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1    2578753 125 -   2996164 atatggtttgg-ttttgtgtccccacccaaatctcatctcaattgtaatctctcatgtccagggagagacctggagggaagtgattggatcatggggaaagtttcccccatgctgttctcatgaca
i macNem1.NW_012011356v1   C 0 I 14270
s cerAty1.NW_012002711v1     342953 125 +    766320 atatggtttgg-ttttgtgtccccacccaaatctcatctctattgtaatctctcatgtcaagggagggacctggagggaagtgattggatcatggggaaagtttcccccatgctgttctcatgaca
i cerAty1.NW_012002711v1   C 0 I 9968
s chlSab2.chr17            28805571 125 -  71996105 atatggtttgg-ttttgtgtccccacccaaatctcatcacaattgtaatctctcatgtcaagggagggaccttgagggaagtgattggatcatggggaaagtttcccccatgctgttctcatgaca
i chlSab2.chr17            C 0 I 5515
s manLeu1.NW_012099655v1     318902 125 -    352859 atatggtttgg-ttttgtgtccccacccaaatctcatctctattgtaatctctcatgtccagggagggacctggagggaagtgattggatcatggggaaagtttcccccatgctgttctcatgaca
i manLeu1.NW_012099655v1   C 0 I 7357
e mm10.chr17               57688272 72423 -  94987271 I
e dasNov3.JH569098           153084 39199 -    254539 I
e proCoq1.NW_012152574v1     440239 9182 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2107946 3907 -   2232465 I
e colAng1.NW_012115566v1    2414511 7657 -   3067355 I
e macFas5.chr4             29588817 7443 - 170955103 I
e rheMac8.chr4             29925175 7168 + 172585720 I

a score=186672.000000
s hg38.chr6_GL000254v2_alt   690209 263 +   4827813 TATACACTAAGtaaacaga----gctctggtcta-tataaccctgggaaccaaccacatcctctctgtactacttacctccagacttcttttacttgagagaaaaattaacttttaCTTACATGACAATTTTTACTTTTAAAACTTTGTATTGACAGTTTCTAATAGCTAAGTGTGATTCCTGGCTGACT--GATATATAATGTACTAGAGAGCCATTTATTAAAATGGTGAATTTTGGAATTGAAAAAGGAACATAAAAACATTTGGAA
s panTro5.chr6             29663671 265 + 175400573 TATACACTAAGtaaacgaa----gctctggtcta-tataaccctgggaatcaaccacatcctctctgtactacttacctccagacttcttttacttgagagaaaaattaacttttaCTTACAAGACAATTTTTACTTTTAAAACTTTGTATTGACAGTTTCTAATAGCTAAATGTGATTCCTGGCTGACTCTGATATATAATGTACTAGAGAGCCATTTATTAAAATGGTGAATTTTGGAATTGAAAAAGGAACATAAAAGCATTTGGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29901893 265 + 173848474 TATACACTAAGTAAACGAA----GCTCTGGTCTA-TATAACCctgggaatcaaccacatcctctctgtactacttacctccggacttcttttacttgagagaaaaattaacttttaCTTACAAGACAATTTTTACTTTTAAAACTTTGTATTGACAGTTTCTAATAGCTAAATGTGATTCCTGGCTGACTCTGATATATAATGTACTAGAGAGCCATTTATTAAAATGGTGAATTTTGGAATTGAAAAAGGAACATAAAAGCATTTGGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5704754 265 +   6154872 TATACACTAAGTAAGCAGA----GCTCTGGTCTA-CATAACCCTGggaaccaaccacatcctctctgtactacttacctccagacttcttttacttgagagaaaaattaacttttaCTTACATGACAATTTTCACTTTTAAAACTTTGTATTGACAGTTTCTAATAGCTAAATGTGATTCCTGGCTGACTCTGATATATAATGTACTAGAGAGCCATTTATTAAAATGGTGAATTTTGGAATTGAAAAAGGAACATAAAAACATTTGGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742          2111853 263 -   2232465 TACATGCTAGGAAGACAAAAGGGGCTGTAGTCTATTAGGACCACAGGAACCAACCATACCTTCTTTATAATACCTACCTCAG-------TTTTTTTGAGAGAAAAATTAACTTTTGCTTATAAAACTATTTTTACTCTTAAAATTTTGTACTGATTGTCTGTAATAGCTAAATGTGGTACCTACCTGACTTCAACAAGTGGTACACTATACAgccacttactaaaatggtaaacattgggtaagaaacagaaggaggaaaggggttgaag
i otoGar3.GL873742         I 3907 C 0
e mm10.chr17               57688272 72423 -  94987271 I
e dasNov3.JH569098           153084 39199 -    254539 I
e proCoq1.NW_012152574v1     440239 9182 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2414511 7657 -   3067355 I
e manLeu1.NW_012099655v1     319027 7357 -    352859 I
e chlSab2.chr17            28805696 5515 -  71996105 I
e cerAty1.NW_012002711v1     343078 9968 +    766320 I
e macNem1.NW_012011356v1    2578878 14270 -   2996164 I
e macFas5.chr4             29588817 7443 - 170955103 I
e rheMac8.chr4             29925175 7168 + 172585720 I

a score=5230.000000
s hg38.chr6_GL000254v2_alt   690472 6 +   4827813 TAAAAG
s panTro5.chr6             29663936 6 + 175400573 TAAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29902158 6 + 173848474 TAAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5705019 6 +   6154872 TAAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29596260 6 - 170955103 TAGGAA
i macFas5.chr4             I 7443 C 0
s otoGar3.GL873742          2112116 6 -   2232465 caaagg
i otoGar3.GL873742         C 0 C 0
e mm10.chr17               57688272 72423 -  94987271 I
e dasNov3.JH569098           153084 39199 -    254539 I
e proCoq1.NW_012152574v1     440239 9182 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2414511 7657 -   3067355 I
e manLeu1.NW_012099655v1     319027 7357 -    352859 I
e chlSab2.chr17            28805696 5515 -  71996105 I
e cerAty1.NW_012002711v1     343078 9968 +    766320 I
e macNem1.NW_012011356v1    2578878 14270 -   2996164 I
e rheMac8.chr4             29925175 7168 + 172585720 I

a score=5005.000000
s hg38.chr6_GL000254v2_alt   690478 1 +   4827813 T
s panTro5.chr6             29663942 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29902164 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5705025 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29932343 1 + 172585720 T
i rheMac8.chr4             I 7168 C 0
s macFas5.chr4             29596266 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     353046 1 +    766320 T
i cerAty1.NW_012002711v1   I 9968 C 0
s chlSab2.chr17            28811211 1 -  71996105 T
i chlSab2.chr17            I 5515 C 0
s manLeu1.NW_012099655v1     326384 1 -    352859 T
i manLeu1.NW_012099655v1   I 7357 C 0
s colAng1.NW_012115566v1    2422168 1 -   3067355 T
i colAng1.NW_012115566v1   I 7657 C 0
s otoGar3.GL873742          2112122 1 -   2232465 t
i otoGar3.GL873742         C 0 I 9139
e mm10.chr17               57688272 72423 -  94987271 I
e dasNov3.JH569098           153084 39199 -    254539 I
e proCoq1.NW_012152574v1     440239 9182 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e macNem1.NW_012011356v1    2578878 14270 -   2996164 I

a score=726721.000000
s hg38.chr6_GL000254v2_alt   690479 189 +   4827813 TAATCATCACCTTTCCAcaatggatgattaaagtattagggaaaacgttaattagaaactgagtaattgatagatctgactgataccacctcaactcactggacaataatataaatagcatctctaagagtgggacaactaaatatcatgtgtctcaggatatgatgcaataaaaataacatagcaact
s panTro5.chr6             29663943 189 + 175400573 TAATCATCACCTTtcctcgatggatgattaaagtattagggaaagtgttaattagaaactgaataatggatagatctgacagataccacctcaactcactggtcaataatgtaaatagcatctctaagagtgggacaaccaaatataatgtgtctcaggatatgatgcaataaaaataacatagcaACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29902165 189 + 173848474 TAATCATCACCTTtcctcgatggatgattaaagtattagggaaagtgttaattagaaactgaataatggatagatctgacagataccacctcaactcactggtcaataatgtaaatagcatctctaagagtgggacaactaaatataatgtgtctcaggatatgatgcaataaaaataacatagcaACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5705026 188 +   6154872 TAATCATCACCTTTCCGTGatggatgattaaagtattagggaaaatgttaa-aagaaactgagtaattgatagatctgactgataccacctcaactcactggtcaataatataaatagcatctctaatagtgggacaactaaatatcatgtgtctcaggatatgatgcaataaaaataacatagcaact
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29932344 189 + 172585720 TAATCATCACCTTtcctcaattgatgattaaaatattagggaaaatgttaattagaaactgagtaatagatagatctgactgataccacttcaactcactggtcaataatataaatagcatctctaagagtgggacaaccaaatatcatgtgtctcaggacatgattcaataaaaataacatagcaACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29596267 189 - 170955103 TAATCATCACCTTtcctcaattgatgattaaaatattagggaaaatgttaattagaaactgagtaataggtagatctggctgataccacttcaactcactggtcaataatacaaatagcatctctaagagtgggacaaccaaatatcatgtgtctcaggacatgattcaataaaaataacatagcaact
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     353047 189 +    766320 TAATCATCACCTTtcctcaattgatgattaaaatattagggaaaatgttaattagaaactgagtaatagatagatctggctgataccacttcaactcactggtcaataatataaatagcatctctaagagtgggacaaccaaatatcatgtgtctcagcacatgattcaataaaaataacatagcaact
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28811212 189 -  71996105 TAATCATCACCTTtcctcaattgatgattaaaatattagggaaaatgttaattagaaactgagtaatagatagatctggctgataccacttcaactcactggtcaataatataaatagcatctctaagagtgggacaaccaaatatcatgtgtctcaggatatgattcaataaaaataacatagcaact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     326385 189 -    352859 TAATCATCACCTTtcctcaattgatgattaaaatattagggaaaatgttaattagaaactgagtaatagatagatctggctgataccacttcaactcactggtcaataatataaatagcatctctaagagtgggacaaccaaatatcatgtgtctcaggacatgattcaataaaaataacatagcaact
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2422169 189 -   3067355 TAATCATCACCTTtcctcaattgatgattaaaatattcgggaaaatgttaattggaaactgagtaacagatagatctggatgataccacttcaactcactggtcaataatataaatagcatctctaagagtgggacaaccaaatatcatgtgtctcaggatatgattcaataaaaataacatagcaact
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57688272 72423 -  94987271 I
e dasNov3.JH569098           153084 39199 -    254539 I
e proCoq1.NW_012152574v1     440239 9182 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2112123 9139 -   2232465 I
e macNem1.NW_012011356v1    2578878 14270 -   2996164 I

a score=2231831.000000
s hg38.chr6_GL000254v2_alt   690668 522 +   4827813 taagtcaatggcatgacaaaaaagtggg-----------gtctgctatgttataaagggactggaaagacaataacaaaatacattgtgtgaaccttgtttagatcctaattttaagaaattacttaaagatcaatggagaaatttgaacatggcttgtgtat-tagatgatataaaggaaatactgataattgtgctaagtatcataatggtattgtgggcatggttttttaaaatgtctttattagtcacagattatactaaatac--atatgtggaatatgtacatacataacttacacaacataatagttatacaacatctggaatttgccctaaa-attttccatgaaaactaacaaacaaggagctgtagctaattaaaat--aagattagcaaaatgttgatgttgaagctggatggtggctacatg-----gagtacatgggggttcactgtgctcttct-----cttttatgtatgtttgaaatgttctacaagaaaagaagtttaaaag----------aaaAGGAATTCAGCTTTAGATTTTTAAAAA
s panTro5.chr6             29664132 525 + 175400573 TAAGTCAACGGAATGACAAAAAAGTGGG-----------GTCTGCTATGTTATaaagggactggaaagacaataacaaaatgcattgtgtgaaccttgtttagagcctaattttaagaaattactcaaagatcaatggagaaatttgaacatggcttgtgtat-tagatgatataaaggaaatactgataattgtgctaagtatcataatggtatggtgggcatggttttttaaaatgtctttatcagtcacagatcatactaaatacttacatgtggaatatgtacatacacaacttacacaacataatagttacacaacatctggaacttgccctaaa-atattccatgaaaacaaacaaacaaggagctgtagctaattaaaat--aagattagcaaaatgttgatgttggagctggatggtggctacatg-----gagtacatgggggttctctgggctcttct-----cttttgtgtatgtttgaaatgttctacaagaaaagaagtttaaaaGC---------AAAAGGAATTCAGCTCTAGATTTTTAGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29902354 525 + 173848474 TAAGTCAACGGAATGACAAAAAAGTGGG-----------GTCTGCTATGTTATaaagggactggaaagacaataacaaaatgcattgtgtgaaccttgtttagagcctaattttaagaaattactcaaagatcaatggagaaatttgaacatggcttgtgtat-tagatgatataaaggaaatactgataattgtgctaagtatcataatggtatggtaggcatggttttttaaaatgtctttatcagtcacagatcatactaaatacttacatgtggaatatgtacatacacaacttacacaacataatagttacacaacatctggaacttgccctaaa-atattccatgaaaacaaacaaacaaggagctgtagctaattaaaat--aagattagcaaaatgctgatgttgaagctggatggtggctacatg-----gagtacatgggggttctctgggctcttct-----cttttgtgtatgtttgaaatgttctacaagaaaagaagtttaaaaGC---------AAAAGGAATTCAGCTCTAGATTTTTAGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5705214 523 +   6154872 taagtcaatggcatgacaaaaaagtagg-----------gtctgctatgttataaagggactggaaagacaataacaaaatacattgtgtgaaccttgtttagatcctaattttaagaaattacttaaagatcaatggagaaatttgaacatgtcttgtgtat-tagatgatataaaggaaatactgataattgtgctaagtatcataatggtattgtgggcatggttttttaaaatgtctttatcagtcacagattatactaaatac--atatgtggaatatgtacatacataacttacacaacataatagttacacaacatctggaatttgccctaaa-attttccatgaaaacaaacaaacaaggagctgtagctaattaaaat--aagattagcaaaatgttgatgttgaagctggatggtggctacatg-----gagtacatgggggttcactgtgctcttct-----cttttatgtatgtttgaaatgttctacaagaaaagaagtttaaaaGC---------AAAAGGAATTCAGCTTTAGATTTTTTAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29932533 516 + 172585720 T-----AATGGCATGACAAAAACGTGGG-----------GTCTGCTATGTTATaaagggactggaaagacaataacaaaatgcattgtgtgaaccttgtttagatcttaattttaagaaattacttaaagatcaatggagaaatttgtacatggcttgtgtat-tagatgatataaaggaaatactgatgattgtgctaagtatcataatgatatggtgggcatggttttttaaaatgtctttatcagtcacagatcatattaaatacttacatgtggagtatgtacaaacacaacttacacaacataatacttacacaacatctggaatttgccctaaa-attttccatga----aaacaaacaaggaactgtagctaattaaaat--aagattagcaaaatgttgatgttgaagctgggtgatggctacatg-----gggcacatgggggttcactatgctcttct-----cttttgtgtatgtttgaaatgttctacaagaaaagaagtttaaaaGT---------AAAAGGAATTCAGCTTTAGATTTTTAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29596456 521 - 170955103 taagtcaatggcatgacaaaaaagtggg-----------gtctgctatgttataaagggactggaaagacaataacaaaatgcattgtttgaaccttgtttagatcttaattttaagaaattacttaaagatcaatggagaaatttgtacatggcttgtgtat-tagatgatataaaggaaatactgatgattgtgctaagtatcataatgatatggtgggcatggttttttaaaatgtctttatcagtcacagatcatattaaatacttacatgtggagtatgtacaaacacaacttacacaacataatacttacacaacatctggaatttgccctaaa-attttccatga----aaacaaacaaggaactgtagctaattaaaat--aagattagcaaaatgttgatgttgaagctgggtgatggctacatg-----gagcacatgggggttcactatgctcttct-----cttttgtgtatgtttgaaatgttctacaagaaaagaagtttaaaaGT---------AAAAGGAATTCAGCTTTAGATTTTTAAAAA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     353236 521 +    766320 taagtcaatggcatgacaaaaaagtggg-----------gtctgctatgttataaagggactggaaagacaataacaaaatgcattgtttgaaccttgtttagatcttaattttaagaaattacttaaagatcaatggagaaatttgtacatggcttgtgtat-tagatgatataaaggaaatactgatgattgtgctaagtatcataatgatatggtgggcatggttttttaaaatgtctttatcagtcacggatcatattaaatacttacatgtggagtatgtacaaacacaacttacacaacataatacttacacaacatctggaatttgccctaaa-attttccatga----aagcaaacaaggaactgtagctaattaaaat--aagattagcaaaatgttgatgttgaagctgggtgatggctacatg-----gggcacatggggcttcactatgctcttct-----cttttgtgtatgtttgaaatgttctacaagaaaagaagtttaaaaGT---------AAAAGGAATTCAGCTTTAGATTTTTAAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28811401 517 -  71996105 taagtcaatggcatgacaaaaaagtggg-----------gtctgctatgttataaagggactggaaagacaataacaaaaggcattgtgtgaaccttgtttagatcttaattttaagaaattacttaaagatcaatggagaaatttgtacatggcttgtgtat-tagatgatataaaggaaatactgatgattgtgctaagt---ataatgatatggtgggcatggttttttaaaatgtctttatcagtcacagatcatactaaatacttacatgcggagtatgtacaaacacaacttacacaacataatacttacacaacatctggaatttgccctaaa-atgttccatga----aaacaaacaaggaactgtagctaattaaaat--aagattagcaaaatgttgatgttgaagctgggtgatggctacatg-----gggcacatgggggttcactatgctcttct-----cttttgtgtgtgtttgaaatgttctacaagaaaataagtttaaaaGT----------AAAGGAATTCAGCTTTAGATTTTTAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     326574 526 -    352859 taagtcaatggcatgacaaaaaagtggg-----------gtctgctatgttataaagggactggaaagacaataacgaaatgcattgtttgaaccttgtttagatcttaattttaagaaattacttaaagatcaatggagaaatttgtacatggcttgtgtat-tagatgatataaaggaaatactgatgattgtgctaagtatcataatgatatggtgggcatggttttttaaaatgtctttatcagtcacagatcatattaaatacttacatgtggagtatgtacaaacacaacttacacaacataatacttacacaacatctggaatttgccctaat-attttccatga----aaacaaacaaggaactgtagctaattaaaat--aagattagcaaaatgttgatgttgaagctgggtgatggctgggtgaagctgggcacatgggggttcactatgctcttct-----cttttgtgtatgtttgaaatgttctacaagaaaagaagtttaaaaGT---------AAAAGGAATTCAGCTTTAGATTTTTAAAAA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2422358 525 -   3067355 caagtcaatggcatgacaaaaaAGTGGG-----------GTCTGCTATGTTATAAAGGGACTGGAAAGACAATAACAAAATGCAttgtgtgaaccttgtttagatcctaattttaagaaattacttaaagatcaatggagaaatttgtacatggcttgtgtat-tagatgatataaaggaaatactgacgattgtgctaagtatcataatgatatggtgggcatggttttttaaaatgtctttatcagtcacagatcacagtaaatacttacatgtgGAGTATGTACAAACACAACTTACACAACATAATACTTACACAACAtctggaatttgccctaaa-attttccatgaaaacaaacaaacaaggaactgtagctaattaaaat--aagattagcaaaatgttgatgttgaagctgagtgatggctacatg-----gggcacatgggggttcactatgctctcct-----cttttgtgtatgtttgaaatgttctaccaaaaaagAAGTTTAACAGT---------AAAAGGAATTCAGCTTCAGATTTTTAGAAA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2121262 528 -   2232465 taagtcaatggcatggaaagagagagagagagagaggaaatctgctacatatcaaagggactagaaacataagaa-aaaatgcattttctaa--tttattaa-----tttttttaattaagatctaaataatcaatggagaaa-ctgaatatggcttttgtatctagatgatgttaaggaaatattgataattgtgctgagtatcataatgccatggtgggcatagcttttaaaaatgtc--tgtcaatcagagaacatactaaatacttatatgtggaatatatagacacacaacttacacaacacaatactaacacaacacctagaatttgctctaaagattttcagcaa----aaaaaaaaaaagggctacaggtaatataaaccaaaaaaaagcaaaatgatggtgttgaagatggatggtggctacaag--------------gggattcactctgcttttctctctacttttgtgtatgcttgaaattttctacaataaa--aagttaaaaaaCACATAAGTAAAAATCAATTCAACtttaaattttaaaaaa
i otoGar3.GL873742         I 9139 I 123
e mm10.chr17               57688272 72423 -  94987271 I
e dasNov3.JH569098           153084 39199 -    254539 I
e proCoq1.NW_012152574v1     440239 9182 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e macNem1.NW_012011356v1    2578878 14270 -   2996164 I

a score=86595.000000
s hg38.chr6_GL000254v2_alt   691190 20 +   4827813 CACATATCCTTAGATCTTGC
s panTro5.chr6             29664657 20 + 175400573 CACATATCCTTAGATCTTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29902879 20 + 173848474 CACATAACCTTAGATCTTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5705737 20 +   6154872 CACATATCCTTAGATGTTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29933049 20 + 172585720 CACATATCCTTAAATCTTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29596977 20 - 170955103 CACATATCCTTAAATCTTGC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     353757 20 +    766320 CACATATCCTTAAATCTTGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28811918 20 -  71996105 CATATATCCTTAAATCTTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     327100 20 -    352859 CACATATCCTTAAATCTTGC
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2422883 20 -   3067355 CACATATCCTTAAATCTTGC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2121913 20 -   2232465 CACATGTGCTTCAACTTTGC
i otoGar3.GL873742         I 123 C 0
e mm10.chr17               57688272 72423 -  94987271 I
e dasNov3.JH569098           153084 39199 -    254539 I
e proCoq1.NW_012152574v1     440239 9182 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e macNem1.NW_012011356v1    2578878 14270 -   2996164 I

a score=287540.000000
s hg38.chr6_GL000254v2_alt   691210 57 +   4827813 AATTTAGGTGCTAAAAGTTTATTACAGGAAAATCCAGATGTAAACAATGTACAGTAA
s panTro5.chr6             29664677 57 + 175400573 AATTTAGGTGCTAAAAGCTTATTACAGGAAAATCCAGATGTAAACAATGTACAGTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29902899 57 + 173848474 AATTTAGGTGCTAAAAGCTTATTACAGGAAAATCCAGATGTAAACAATGTACAGTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5705757 57 +   6154872 AATTTAGGTGCTAAAAGTTTATTACAGGAAAATCCAGATGTAAACAATGTACAGTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29933069 57 + 172585720 AATTTAAGTGCTAAAAGCTTATTACAGGAAAATCCAGATGTAAACAATGTACAGTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29596997 57 - 170955103 AATTTAAGTGCTAAAAGCTTATTACAGGAAAATCCAGATGTAAACAATGTACAGTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2593148 57 -   2996164 AATTTAAGTGCTAAAAGCTTATTACAGGAAAATCCAGATGTAAACAATGTACAGTAA
i macNem1.NW_012011356v1   I 14270 C 0
s cerAty1.NW_012002711v1     353777 57 +    766320 AATTTAAGTGCTAAAAGCTTATTACAGGAAAATCCAGATATAAACAATGTACAGTAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28811938 57 -  71996105 AATTTAAGTGCTGAAAGCTTATTACAGGAAAATCCAGATGTAAACAATGTACAGTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     327120 57 -    352859 AATTTAAGTGCTAAAAGCTTATTACAGGAAAATCCAGATGTAAACAATGTACAGTAA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2422903 57 -   3067355 AATTTAAGTGCTAAAAGCTTATTACAGGAAAATCCAGATATAAACAATGTACAGTAA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2121933 44 -   2232465 AACTTAAGTCCTAAAAATT-------------TCACTATGCAATGTTCGTGTATTGA
i otoGar3.GL873742         C 0 C 0
e mm10.chr17               57688272 72423 -  94987271 I
e dasNov3.JH569098           153084 39199 -    254539 I
e proCoq1.NW_012152574v1     440239 9182 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=415142.000000
s hg38.chr6_GL000254v2_alt   691267 75 +   4827813 AAGAATAGAATACAACTAAAAATTCCCAA-AATAGAAT--------AACAAATCATGTTTAGCCATACGATGAAGCCCAGAAGA
s panTro5.chr6             29664734 75 + 175400573 AAGAATGGAATACAACTAAAAATTCCCAA-AATAGAAT--------AACAAATCATGTTTAGCCATATGATGAAGCCCAGAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29902956 75 + 173848474 AAGAATGGAATACAACTAAAAATTCCCAA-AATAGAAT--------AACAAATCATGTTTAGCCATATGATGAAGCCCAGAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5705814 75 +   6154872 AAGGATAGAATACAACTAAAAATTCCCAA-AATAGAAT--------AACAAATCATGTTTAGCCATACGATGAAGCCCAGAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29933126 75 + 172585720 AAGAACGGAATACAATTAAAAATTCCCAA-AATAGAAT--------AACAAATCATGTTCAGCCACACAATGAAGCCCAGAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29597054 75 - 170955103 AAGAACAGAATACAATTAAAAATTCCCAA-AATAGAAT--------AACAAATCATGTTCAGCCCCACAATGAAGCCCAGAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2593205 75 -   2996164 AAGAACAGAATACAATTAAAAATTCCCAA-AATAGAAT--------AACAAATCATGTTCAGCTCCGCAATGAAGCCCAGAAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     353834 75 +    766320 AAGAACAGAATACAATTAAAAATTCCCAA-AATAGAAT--------AACAAATCATGTTCAGCTACGCAATGAAGCCCAGAAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28811995 75 -  71996105 AAGAACGGAATACAATTAAAAGTTCCCAA-AATAGAAT--------AACAAATCATGTTCAGCCACACAATGAAGCCCAGAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     327177 75 -    352859 AAGAACAGAATACAATTAAAAATTCCCAA-AATAGAAT--------AACAAATCATGTTCAGCTACGCAATGAAGCCCAGAAGA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2422960 75 -   3067355 AAGAACAGAATACAATTAAAAATTCCCAA-AATAGAAT--------AACAAATCATGTTCAGCCACACAATTAAGCCCAGAAGA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2121977 81 -   2232465 AATAATTGAATATGACTAAAAATTCCCAGCAATAGTTTATT---TAAATAAATAGTGTGTAGCCCTACTACGAAGCACAGAAGT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           192283 84 -    254539 AAGACTTAAATACAACCAAAATTCCAAAAAAATAGAATATTATCTAAACAAACCATGTTTTGTCATACAATGAAGCCTAGAAGA
i dasNov3.JH569098         I 39199 C 0
e mm10.chr17               57688272 72423 -  94987271 I
e proCoq1.NW_012152574v1     440239 9182 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=72405.000000
s hg38.chr6_GL000254v2_alt   691342 11 +   4827813 ATAAAGAAATA
s panTro5.chr6             29664809 11 + 175400573 ATAAAGAAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29903031 11 + 173848474 ATAAAGAAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5705889 11 +   6154872 ATAAAGAAATA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29933201 11 + 172585720 ATAAAGAAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29597129 11 - 170955103 ATAAAGAAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2593280 11 -   2996164 ATAAAGAAATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     353909 11 +    766320 ATAAAGAAATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28812070 11 -  71996105 ATAAAGAAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     327252 11 -    352859 ATAAAGAAATA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2423035 11 -   3067355 ATAAAGAAATA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     449421 11 +    730504 ATAAAGAAGTG
i proCoq1.NW_012152574v1   I 9182 C 0
s otoGar3.GL873742          2122058 11 -   2232465 ATAACGAAGTA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           192367  8 -    254539 ATAAAGTA---
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57688272 72423 -  94987271 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=547042.000000
s hg38.chr6_GL000254v2_alt   691353 80 +   4827813 GATGCTTGTTAATAGAAAAAGTTGTTCGTGACACAGTGTTCAGTGGAAAACCAGATTACAAACTCCATGATCCAACTTGT
s panTro5.chr6             29664820 80 + 175400573 GATGCTTGTTAATAGAAAAAGTTGTTCGTGACACAGTGTTCAGTGGAAAACCAGACTACAAACTCCATGATCCAACTTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29903042 80 + 173848474 GATGCTTGTTAATAGAAAAAGTTGTTCGTGACACAGTGTTCAGTGGAAAACCAGATTACAAACTCCATGATCCAACTTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5705900 80 +   6154872 GATGCTTGTTAATAGAAAAAGTTGTTCGTGACACAGTGTTCAGTGGAAAACCAGATTACAAACTCCATGATCCAACTTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29933212 80 + 172585720 GATGCTTATTAACAGAAAAAGTTGCTCATGACACAGTGTTCAGTGAAAAACCAGATGACAAACTCCATGATCCAAGTTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29597140 80 - 170955103 GATGCTTATTAACAGAAAAAGTTGCTCATGACACAGTGTTCAGTGAAAAACCAGATTACAAACTCCATGATCCAAGTTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2593291 76 -   2996164 GATGCTTATTAATAG----AGTTGCTCGTGACACAGTGTTCAGTGAAAAACCAGATTACAAACTCCATGATCCAACTTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     353920 76 +    766320 GATGCTTATTAATAG----AGTTGCTCGTGACACAGTGTTCAGTGAAAAGCCAGATTACAAACTCCATGATCCAACTTGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28812081 80 -  71996105 GATGCTTGTTAATAGAAAAAGTTGTTCGTGACACACTGTTCAGTGAAAAACCAGATTATAAACTCCATGATCCAACTTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     327263 76 -    352859 GATGCTTATTAATAG----AGTTGCTCGTGACACAGTGTTCAGTGAAAAACCAGATTACAAACTCCATGATCCAACTTGT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2423046 80 -   3067355 GATGCTTGTTAATAGAAAAAGTTGTTCGTGACACAATGTTCAGTGAAAAACCAGATTACAAACTCCATGATCCAACTTGT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     449432 80 +    730504 GATACTTATTAATGTAAAAAGTTGTTCATGACATACTGTTCAGTGGAAAATCAGATTTCAAACTCCATGATCCAATTTGT
i proCoq1.NW_012152574v1   C 0 I 129
s otoGar3.GL873742          2122069 76 -   2232465 GATACGTATTAATAT-AAAAGTTGCACATGATA---TGTTTAGCAGAAAATCAGAGAACAAACTCCATGTTCCAATTTAT
i otoGar3.GL873742         C 0 I 5
s mm10.chr17               57760695 72 -  94987271 GATACTTGT--------AAAGTTACTTATGACATATCATTTTGTGGGAAAGCAAATTACAAGTTCATCCATCAAGTTTGC
i mm10.chr17               I 72423 C 0
s dasNov3.JH569098           192375 79 -    254539 Gatatttattaatatagaaagatgttcataacatggtattcaatggaaaaccagatta-aaaccctatgatctagaatgt
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I

a score=594604.000000
s hg38.chr6_GL000254v2_alt   691433 103 +   4827813 ATG---------TATAAATATAAATACACATA----GAAAGAAATTTTTAAATGTCATACAACAATAATATAAA-AAACAATATTTCTAGGTTTATTTTGGTATTGCTGTATT--------ATTT---
s panTro5.chr6             29664900 107 + 175400573 ATG---------tataaatataaatatacata----gaaagaaattttaaaatgtcgtacaacaataatataaa-aaacaatatTTCTAGGTTTATTTTGGTATTGCTCTTTTG----TTTATTT---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29903122 107 + 173848474 ATG---------TATAAATATAAATATACATA----GAAAGAAATTTTAAAATGTCATACAACAATAATATAAA-AAACAATATTTCTAGGTTTATTTTGGTATTGCTCTTTTG----TTTATTT---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5705980 103 +   6154872 ATG---------TATAAATATAAATACACATA----GAAAGAAATTTTAAAATGTCATACAACAATAATATAAA-AAACAATATTTCTAGGTTTATTTTGGTATTGCTGTATT--------ATTT---
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29933292 111 + 172585720 ATG---------tataaatataaatgcacata----gaaataaattttaaaatgtcatacaacaataatataaa-aaacaatatTTCTAGATTTATTTTGGTATTGCTGTTTTGTGTATCTATTT---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29597220 111 - 170955103 ATG---------TATAAATATAAATGCACATA----GAAATAAATTTTAAAATGTCATACAACAATAATATAAA-AAACAATATTTCTAGATTTATTTTGGTATTGCTGTTTTGTGTATCTATTT---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2593367 111 -   2996164 ATG---------TATAAATATAAATGCACATA----GAAATAAATTTTAAAATGTCATACAACAATAATATAAA-AAACAATATTTCTAGATTTATTTTGGTACTGCTGTTTTGTGTATCTATTT---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     353996 111 +    766320 ATG---------tataaatataaatgcacata----gaaataaattttaaaatgtcatacaacaataatataaa-aaacaatatTTCTAGATTTATTTTGGTACTGCTGTTTTGTGTATCTATTT---
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28812161 111 -  71996105 ATG---------TATAAATATAAATGCACATA----GAAATAAATTTTAAAATGTCATACAACAATAATATAAA-AAACAATATTTCTTGATTTATTTTGGTATTGCTGTTTTGTATATCTATTT---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     327339 111 -    352859 ATG---------TATAAATATAAATGCACATA----GAAATAAATTTTAAAATGTCATACAACAATAATATAAA-AAACAATATTTCTAGATTTATTTTGGTACTGCTGTTTTGTGTATCTATTT---
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2423126 111 -   3067355 ATG---------TATAAATATAAATGCACATA----GAAATAAATTTTAAAATGTCATACAACACTAATATAAA-AAACAATATTTCTAGATTTATTTTGGTATTGCTGTTTTGTATATCTATTT---
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2122150 112 -   2232465 ATATCAATTTACTATCAATATACATATACATA----GGAAGAAATTCTGAAATGTTATACAACAATAATATAAATAAAAGATATGTTTAGGTTTG-TTTGGTATTGCTGTTTT-------TGTT----
i otoGar3.GL873742         I 5 I 18
s mm10.chr17               57760767 106 -  94987271 ATG---------CTCAAAC-CAAATACACACAATAGGAACGAACTCTTCCAATGTCATACTACAGTAATATAGA-TGAACATTGTTCTAGATTTGTGTTTGTATTGGTATCTTGTTT-----------
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           192454 110 -    254539 -ta---------tatgtacatacatttgtata----gatcaaaaatctggaaggttatacaataataatgtagc----ctctatttctaggtttcttttgatgttatttttgttcatctttgttttct
i dasNov3.JH569098         C 0 I 11
e proCoq1.NW_012152574v1     449512 129 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=361337.000000
s hg38.chr6_GL000254v2_alt   691536 53 +   4827813 TTAAATATTTATGACATATTTAATAAAGAACTAATCAAAGTTTAAATAATTTT
s panTro5.chr6             29665007 53 + 175400573 TTAAATATTTATGGCATATTTAATAAAGAACTAATCAAACTTTAAATAATTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29903229 53 + 173848474 TTAAATATTTATGGCATATTTAATAAAGAACTAATCAAACTTTAAATAATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5706083 53 +   6154872 TTAAATATTTATGACATATTTAATAAAGAACTAATCAAAGTTTAAATAATTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29933403 53 + 172585720 TTAAATATTTATGGCATATTTAATAAAGAACTAATCAAAGTTTAAATAATTTT
i rheMac8.chr4             C 0 I 536
s macFas5.chr4             29597331 53 - 170955103 TTAAATATTTATGGCATATTTAATAAAGAACTAATCAAAGTTTAAATAATTTT
i macFas5.chr4             C 0 I 536
s macNem1.NW_012011356v1    2593478 53 -   2996164 TTAAATATTTATGGCATATTTAATAAAGAACTAATCAAAGTTTAAATAATTTT
i macNem1.NW_012011356v1   C 0 I 535
s cerAty1.NW_012002711v1     354107 53 +    766320 TTAAATATTTATGGCATATGTAATAAAGAACTAATCAAAGTTTAAATAATTTT
i cerAty1.NW_012002711v1   C 0 I 535
s chlSab2.chr17            28812272 53 -  71996105 TTAAATATTTATGGCATATTTAATAAAGAACTAATCAAAGTTTAAATAATTTT
i chlSab2.chr17            C 0 I 536
s manLeu1.NW_012099655v1     327450 53 -    352859 TTAAATATTTATGGCATATGTAATAAAGAACTAATCAAAGTTTAAATAATTTT
i manLeu1.NW_012099655v1   C 0 I 535
s colAng1.NW_012115566v1    2423237 53 -   3067355 TTAAATATTTATGGCATATTTAATAAAGAACTAATTAAAGTTTAAATAATTTT
i colAng1.NW_012115566v1   C 0 I 536
s proCoq1.NW_012152574v1     449641 53 +    730504 TTAAATATTTATGGTGCACTTAATAAAGAACTAATCAAAGTTTAAATAATTTT
i proCoq1.NW_012152574v1   I 129 I 86
s otoGar3.GL873742          2122280 46 -   2232465 TTAAATATTTATGGCACACTT------TAACTAATCAAAGTCTAAATAATTT-
i otoGar3.GL873742         I 18 C 0
s mm10.chr17               57760873 10 -  94987271 ------------------------------CT-------------ATAATTTT
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           192575 53 -    254539 ttAAGTATTCATGGGCtatttaataaagaacttataatatttaaaataatttt
i dasNov3.JH569098         I 11 C 0
e canFam3.chr35            26171997 4719 +  26524999 I

a score=5771.000000
s hg38.chr6_GL000254v2_alt   691589 8 +   4827813 GATTATTT
s panTro5.chr6             29665060 8 + 175400573 GATTATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29903282 8 + 173848474 GATTATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5706136 8 +   6154872 GATTATTT
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742          2122326 4 -   2232465 ----GTTT
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57760883 4 -  94987271 ----GTTT
i mm10.chr17               C 0 I 6
e dasNov3.JH569098           192628 0 -    254539 C
e proCoq1.NW_012152574v1     449694 86 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2423290 536 -   3067355 I
e manLeu1.NW_012099655v1     327503 535 -    352859 I
e chlSab2.chr17            28812325 536 -  71996105 I
e cerAty1.NW_012002711v1     354160 535 +    766320 I
e macNem1.NW_012011356v1    2593531 535 -   2996164 I
e macFas5.chr4             29597384 536 - 170955103 I
e rheMac8.chr4             29933456 536 + 172585720 I

a score=24771.000000
s hg38.chr6_GL000254v2_alt   691597 5 +   4827813 gacat
s panTro5.chr6             29665068 5 + 175400573 Aacat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29903290 5 + 173848474 gacat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5706144 5 +   6154872 gacat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29933992 5 + 172585720 gacat
i rheMac8.chr4             I 536 C 0
s macFas5.chr4             29597920 5 - 170955103 gacat
i macFas5.chr4             I 536 C 0
s macNem1.NW_012011356v1    2594066 5 -   2996164 gacat
i macNem1.NW_012011356v1   I 535 C 0
s cerAty1.NW_012002711v1     354695 5 +    766320 gacat
i cerAty1.NW_012002711v1   I 535 C 0
s chlSab2.chr17            28812861 5 -  71996105 gacaa
i chlSab2.chr17            I 536 C 0
s manLeu1.NW_012099655v1     328038 5 -    352859 gacat
i manLeu1.NW_012099655v1   I 535 C 0
s colAng1.NW_012115566v1    2423826 5 -   3067355 gacac
i colAng1.NW_012115566v1   I 536 C 0
s mm10.chr17               57760893 5 -  94987271 GATAT
i mm10.chr17               I 6 T 52027
e dasNov3.JH569098           192628 0 -    254539 C
e proCoq1.NW_012152574v1     449694 86 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2122330 0 -   2232465 C

a score=279063.000000
s hg38.chr6_GL000254v2_alt   691602 65 +   4827813 ggatggaattggaggctactatccttcgcaaactaacacaggaacagaaaatcaaataccgtatg
s panTro5.chr6             29665073 65 + 175400573 gtatggaattggaggctactatccttcgcaaactaacacaggaagagaaaatcaaatactgtatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29903295 65 + 173848474 gtatggaattggaggctactatccttcgcaaactaacacaggaagagaaaatcaaatactgtatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5706149 65 +   6154872 ggatggaattggaggctactatctttcgcaaactaacacaggaacagaaaatcaaataccgtatg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29933997 65 + 172585720 ggatggaattggaggctactatccttagcaaactaacacaggaacagacaatcaaatactgtatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29597925 65 - 170955103 ggatggaattggaggctactatccttagcaaactaacacaggaacagacaatcaaatactgtatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2594071 65 -   2996164 ggatggaattggaggctactatccttagcaaactaacacaggaacagacaatcaaatactgtatg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     354700 65 +    766320 ggatggagttggaggctaccatccttagcaaactaacacaggaacagacaatcaaatactgtatg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28812866 65 -  71996105 ggatggaattggaggctactatccttagcaaactaacacaggaacagagaatcaaatactgtatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     328043 65 -    352859 ggatggaattggaggctactatccttagcaaactaacacaggaacagacaatcaaatactgtatg
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2423831 65 -   3067355 ggatggaattggaggctactatccttagcaaactaacacaggaacggacaatcaaataccgtatg
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2122330 10 -   2232465 -----------------------------AAACTAGCAC--------------------------
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           192628  8 -    254539 ---------------------------------taaCATAG------------------------
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57760898 52027 -  94987271 T
e proCoq1.NW_012152574v1     449694 86 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=167067.000000
s hg38.chr6_GL000254v2_alt   691667 37 +   4827813 tcttcactcataagtgggagctaaattatgaaaacat
s panTro5.chr6             29665138 37 + 175400573 tcctcattcataagtgggagctaaattatgaacacat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29903360 37 + 173848474 tcctcattcataagtgggaactaaattatgaacacat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5706214 37 +   6154872 tcttcactcataagtgggagctaaattatgaaaacat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29934062 37 + 172585720 tcctcactcataagtgggaactaaattatgaaaacat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29597990 37 - 170955103 tcctcactcataagtgggagctaaattatgaaaacat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2594136 37 -   2996164 tcctcactcataagagggagctaaattatgaaaacat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     354765 37 +    766320 tcctcactcataagtgggagctaaattatgaaaacat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28812931 37 -  71996105 tcctcactcataagtgggaactaaattatgaaaacat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     328108 37 -    352859 tcctcactcataagtgggagctaaattatgaaaacat
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2423896 37 -   3067355 tcctcactcataagtgggagctaaattatgaaaacat
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2122340 10 -   2232465 ---------------------------CTGGAAACGT
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57708871 29 -  94987271 CCTTCATTAGTCATTCGCACCAGTGCTAT--------
i mm10.chr17               T 52027 C 0
e dasNov3.JH569098           192636  0 -    254539 C
e proCoq1.NW_012152574v1     449694 86 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=173129.000000
s hg38.chr6_GL000254v2_alt   691704 41 +   4827813 atggatacatagaggggaacaacacac--tgaatcctacttga
s panTro5.chr6             29665175 43 + 175400573 atggatgcacagaggggaagaacacacactgggtcctacttga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29903397 43 + 173848474 atggatgcacagacgggaacaacacacactgggtcctacttga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5706251 41 +   6154872 atggatacatagaggggaacaacacac--tgaatcctacttga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29934099 43 + 172585720 atagatgcatagaggggaacaacacacaccgggtcctacttga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29598027 43 - 170955103 atagatgcatagaggggaacaacacacaccgggtcctacttga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2594173 43 -   2996164 atagatgcatagaggggaacaacacacactgggtcctacttga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     354802 43 +    766320 atagatgcatagaggggaacaacacacaccgggtcctacttga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28812968 43 -  71996105 acagatgcatagaggggaacaacacacaccaagtcctacttga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     328145 43 -    352859 atagatgcatagaggggaacaacacacaccgggtcctacttga
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2423933 43 -   3067355 atagatgcacagaggggaacaacacacaccgggtcctacttga
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57708900 17 -  94987271 ----ATACATCAAGAGG------------------CTAC----
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           192636  7 -    254539 ------------------------------------CACTTGA
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     449694 86 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2122350  0 -   2232465 C

a score=360010.000000
s hg38.chr6_GL000254v2_alt   691745 84 +   4827813 gggtggaggttgggaggagggagaagatcaggaaaaatgattaatgagtactaggcttaatacctgggtgatgaaataatctgt
s panTro5.chr6             29665218 84 + 175400573 gggtggagggtgggaggagggagaagatcaggaaaaatgactaacgagtactaggcttaatacctgggtgatgaaataatctgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29903440 84 + 173848474 gggtggagggtcggaggagggagaagatcaggaaaaatgactaacgagtactaggcttaatacctgggtgatgaaataatctgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5706292 84 +   6154872 gggtggaggttgggaggagggagaagatcaggaaaaatgattaatgagtactaggcttaatacctgggtgatgaaatagtctgt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29934142 79 + 172585720 gggtggagggtgggaggagggagaaaatcagga-----gactaatgagtactaggcctaatacctgggtgatgaaataatctgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29598070 79 - 170955103 gggtggagggtgggaggagggagaaaatcagga-----gactaatgagtactaggcctaatacctgggtgatgaaataatctgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2594216 79 -   2996164 gggtggagggtgggaggagggagaaaatcagga-----gactaatgagtactaggcctaatacctgggtgatgaaataatctgt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     354845 79 +    766320 gggtggagggtgggaggagggagaaaatcagga-----gactaatgagtactaggcctaatacctgggtgacgaaataatctgt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28813011 79 -  71996105 gggtggagggtgggaggagggagaaaatcagga-----gactaatgagtactaggcctaatacctgggtgatgaaataatctgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     328188 79 -    352859 gggtggagggtgggaggagggagaaaatcagga-----gactaatgggtactaggcctaatacctgggtgatgaaataatctgt
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2423976 79 -   3067355 gggtggagggtgggaggagggagaaaatcagaa-----gactaatgagtactaggcctaatacctgggtgatgaaataatctgt
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57708917 45 -  94987271 ------AGAATGGCAGT----------TCAGTACACATCTTTACAGTGCACTGTGTTGTAT-----------------------
i mm10.chr17               C 0 I 52044
e dasNov3.JH569098           192643  0 -    254539 C
e proCoq1.NW_012152574v1     449694 86 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2122350  0 -   2232465 C

a score=336359.000000
s hg38.chr6_GL000254v2_alt   691829 78 +   4827813 acagtaaacccccatgacacaagtttacctatgt-aacaaacctgcacatgtacccttgaacttaaaataaaagtt-aaa
s panTro5.chr6             29665302 79 + 175400573 agagcaaacccccataacacaagtttacctatgt-aacaaacctgcacatgtacccctgaacttaaaataaaagtttaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29903524 79 + 173848474 agagcaaacccccataacacaagtttacctatgt-aacaaacctgcacatgtacccctgaacttaaaataaaagtttaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5706376 79 +   6154872 acagcaaacccccatgacacaagtttacctatgt-aacaaacctgcacatgtacccttgaacttaaaataaaagtttaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29934221 78 + 172585720 acaacaaacccccataacacaagtttacctatgt--aaaaacctgcacatgtacccctgaacttaaaataaaagtttaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29598149 80 - 170955103 acaacaaacccccataacacaagtttacctatgtaaaaaaacctgcacatgtacccctgaacttaaaataaaagtttaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2594295 79 -   2996164 acaacaaacccccataacacaagtttacctatgt-aaaaaacctgcacatgtacccctgaacttaaaataaaagtttaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     354924 80 +    766320 acaacaaacccccataacacaagtttacctacgtaaaaaatcctgcacatgtacccctgaacttaaaataaaagtttaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28813090 79 -  71996105 acaacaaacccccataacacaagtttacctatgtaaaaaa-cctgcacatgtacccctgaacttaaaataaaagtttaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     328267 80 -    352859 acaacaaacccccatagcacaagtttacctgtgtaaaaaatccggcacacatacccctgaacttaaaataaaagtttaaa
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2424055 79 -   3067355 acaacaaacccccataacacaagtttacctatgt-aaaaaacctgcacatgtacccctgaacttaaaataaaagtttaaa
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57761006 36 -  94987271 ------------------------------------ACAGTAATTCACAT-TATCTTTTAAACTAACATG-------AGA
i mm10.chr17               I 52044 C 0
e dasNov3.JH569098           192643  0 -    254539 C
e proCoq1.NW_012152574v1     449694 86 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2122350  0 -   2232465 C

a score=38935.000000
s hg38.chr6_GL000254v2_alt   691907 6 +   4827813 aaaTTG
s panTro5.chr6             29665381 6 + 175400573 aaaTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29903603 6 + 173848474 aaaTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5706455 6 +   6154872 aaaTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29934299 6 + 172585720 aaGTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29598229 6 - 170955103 aaaTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2594374 6 -   2996164 aaaTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     355004 6 +    766320 aaaTTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28813169 6 -  71996105 aaaTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     328347 6 -    352859 aaaTTG
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2424134 6 -   3067355 aaaTTG
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57761042 6 -  94987271 AAATTA
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           192643 6 -    254539 AAATTA
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     449694 86 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2122350 0 -   2232465 C

a score=383876.000000
s hg38.chr6_GL000254v2_alt   691913 63 +   4827813 TTGCCCTATCA--TTTTCATTTTTAGTATAACTGCAGAAGAGTTCA-AAGAGAATGGTCGAATAAG
s panTro5.chr6             29665387 63 + 175400573 TTGCCCTATCA--TTTTCATTTTTAGTATAACTGCAGAAGGGTTCA-AAGAGAATGGTCGAATAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29903609 63 + 173848474 TTGCCCTATCA--TTTTCATTTTTAGTATAACTGCAGAAGGGTTCA-AAGAGAATGGTCGAATAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5706461 63 +   6154872 TTGCCGTATCA--TTTTCATTTTTAGTATAACTGCAGAAGAGTTCA-AAGAGAATGGTCGAATAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29934305 63 + 172585720 TTGCTCTATCA--TTTTCATTTTTAGTATAACTACAGAAGAGTTCA-AAGAGAATGATCGAATAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29598235 63 - 170955103 TTGCTCTATCA--TTTTCATTTTTAGTATAACTACAGAAGAGTTCA-AAGAGAATGATCGAATAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2594380 63 -   2996164 TTGCCCTATCA--TTTTCATTTTTAGTATAACTACAGAAGAGTTCA-AAGAGAATGATCGAATAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     355010 63 +    766320 TTGCCCTATCA--TTTTCATTTTTAGTATAACTACAGAAGAGTTCA-AAGAGAATGATCGAATAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28813175 63 -  71996105 TTGCCCTATCA--TTTTCATTTTTAGTATAACTACAGAAGAGTTCA-AAGACAATGATCGAATAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     328353 63 -    352859 TTGCCCTATCA--TTTTCATTTTTAGTATAACTACAGAAGAGTTCA-AAGAGAATGATCGAATAAG
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2424140 63 -   3067355 TTGCCCTGTCA--TTTTCATTTCTAGTATAACTACAGAAGAGTTCA-AAGAGAATGATCGAATAAG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2122350 63 -   2232465 TTGCCATACCA--TTCTTAATTTTAGTGTAAGTTCAGAAGAGTTCG-AAGGGAATGTTGGAATAGA
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57761048 62 -  94987271 TTTAACTACTATCTTTCCCCCCTGAGCATAGTT-CAGCAGACCTAA-AGTGGAATGCT--AAGAAG
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           192649 64 -    254539 TTGCCCTACCA--TTCTCACTTTTGGAATAACTATAGAAAAGATCAGAAGGGAGCATTAGAATAGA
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     449694 86 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=6927089.000000
s hg38.chr6_GL000254v2_alt   691976 840 +   4827813 ACAAAGTTACTCC-TCTCCAACCCATCCTGGAAGAGTCCCCAGTGGAGGTGTCCGAAGTCCAAAATAA----CATCTTCATTACTCTC---CTTCAATCAAGT---GTTTCAGTTTGTTTGATACAGAGAATCTTCCGAAGTGCCTGATGCACCTCCTTGTTCCTCATGGTATAGATCACAGGATTGAAGAGAGGGGTGACCACAGTGTAGAGCAGGGAGAAGACCTT-GGAGAGGAGCTGGGAATGGACAGCAGAGGGTGCAACATAAAAGATCATGAGCGTTCCATAGAATGTGGTCACTACAGCTAGGTGGGAGGAGCATGTGGAGAAAGCCCTTCTCCTGCTTGCCCCAGCAGGAACTCTCAGCACTGCCACCACAATTCTGGCATAAGATGTCAGAATCAGTCCAAAAGGAATAGTGAGGCAGAACACAGACAGAATGAGAGTTGTCACCTGAGCCACTCTGGGATCCGAGCAAGCCAGGCCCACGAAAAGCATAAAGTCACAGTAAAACTGGTCAATGTGGTTGGGGCCACAGAACCTCAGCTGGGCCACCAGGGCCACAACCAGTCCATCTACCACAAATCCAGAGAGCCAGGTTGTGACCACCAGCCCCATGTACCGTCTGGGCCCCATCAGGAGTGGGTAGTGGAGTGGGTAGCAAATTGCCAGGTAGCGGTCATATGCCATGACAGCCAGCAGTAAGCATTCAGCTGTGGCTAGAGAGCCGAAGATAAAGAACTGGAGCAAGCAACCAGCCACAGAGATAGTTGCTTCTTGCAGGAAGCCCTCCAGCATTTTTGGCATCACTGCGGAGGTGTAGAGAATATCCAGGAAGGACAGATTCGCCA
s panTro5.chr6             29665450 840 + 175400573 ACAAAGTTACTCC-TCTCCAACCCATCCTAGAAGAATTCCCAGTGGAGGTGCCCGAAGTCCAAAATAA----CATCTTCATTACTCTC---CTTCAATCAAGT---GTTTCAGTTTGTTTGATATAGAGAATCTTCCGAAGTACCTGATGCACCTCCTTGTTCCTCAGGGTATAGATCACAGGATTGAAGAGAGGGGTGACCACAGTGTAGAGCAGGGAGAAGACCTT-TGAGAGGAGCTGGGAATGGACAGCAGAGGGTGCAACATATAAGATCATGAGCGTTCCATAGAATGTGGTCACTACAGCTAGGTGGGAGGAGCATGTGGAGAAAGCCCTTCTCCTGCTTGCCCCAGCAGGAACTCTCAGCACTGCCACCACAATTCTGGCATAAGATGTCAGAATCAGACCAAAAGGAATAGTGAGGCAGAACACAGACAGAACGAGAGTTGTCACCTGAGCCACTCTGGGATCCGAGCAAGCCAGGCCCACGAAAAGCATAAAGTCACAGTAAAACTGGTCAATGTGATTGGGGCCACAGAACCTCAGCTGGGCCACCAGGGCCACAACCAGTCCATCTACCATAAATCCAGAGAGCCAGGTTGTGACCACCAGCCCCATGCACCGACTGGGCCCCATCAGGAGTGGGTAGTAGAGTGGGTAGCAAATTGCCAGGTAGCGATCATATGCCATGACAGCCAGCAGTAAGCATTCAGCTGTGGCTAGAGAGCCAAAGATAAAGAACTGGAGCAAGCAACAAGCCACAGAGATGGTTGCTTCTTGCAGGAAGCCCTCCAGCATTTTTGGCATCACTGCGGAGGTGTAGAGAATATCCAGGAAGGACAGATTCGCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29903672 840 + 173848474 ACAAAGTTACTCC-TCTCCAACCCATCCTAGAAGAATTCCCAATGGAGGTGCCCGAAGTCCAAAATAA----CATCTTCATTACTGTC---CTTCAATCAAGT---GTTTCAGTTTGTTTGATATAGAGAATCTTCCGAAGTACCTGATGCACCTCCTTGTTCCTCAGGGTATAGATCACAGGATTGAAGAGAGGGGTGACCACAGTGTAGAGCAGGGAGAAGACCTT-TGAGAGGAGCTGGGAATGGACAGCAGAGGGTGCAACATATAAGATCATGAGCGTTCCATAGAATGTGGTCACTACAGCTAGGTGGGAGGAGCATGTGGAGAAAGCCCTTCTCCTGCTTGCCCCAGCAGGAACTCTCAGCACTGCCACCACAATTCTGGCATAAGATGTCAGAATCAGACCAAAAGGAATAGTGAGGCAGAACACAGACAGAACGAGAGTTGTCACCTGAGCCACTCTGGGATCCGAGCAAGCCAGGCCCACGAAAAGCATAAAGTCACAGTAAAACTGGTCAATGTGATTGGGGCCACAGAACCTCAGCTGGGCCACCAGGGCCACAACCAGTCCATCTACCATAAATCCAGAGAGCCAGGTTGTGACCACCAGCCCCATGCACCGACTGGGCCCCATCAGGAGTGGGTAGTAGAGTGGGTAGCAAATTGCCAGGTAGCGATCATATGCCATGACAGCCAGCAGTAAGCATTCAGCTGTGGCTAGAGAGCCAAAGATAAAGAACTGGAGCAAGCAACAAGCCACAGAGATGGTTGCTTCTTGCAGGAAGCCCTCCAGCATTTTTGGCATCACTGCGGTGGTGTAGAGAATATCCAGGAAGGACAGATTAGCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5706524 840 +   6154872 ACAAAGTTACTCC-TCTCCAACCCATCCTGGAAGAGTTCCCAATGGAGGTGTCCGAAGTCCAAAATAA----CATCTTCATTACTCTC---CTTCAATCAAGT---GTTTCAGTTTGTTTGATATAGAGAATCTTCCGAAGTGCCCGATGCACCTCCTTGTTCCTCATGGTATAGATCACAGGATTGAAGAGAGGGGTGACCACAGTGTAGAGCAGGGAGAAGACCTT-GGAGAGGAGCTGGGAATGGACAGCAGAGGGTGCAACATAAAAGATCATGAGCGTTCCATAGAATGTGGTCACTACAGCTAGGTGGGAGGAGCATGTGGAGAAAGCCCTTCTCCTGCTTGCCCCAGCAGGAACTCTCAGCACTGCCACCACAATTCTGGCATAAGATGTCAGAATCAGTCCAAAAGGAATAGTGAGGCAGAACACAGACAGAATGAGAGTTGTCACCTGAGCCACTCTGAGATCCGAGCAAGCCAGGCCCACGAAAACCATAAAGTCACAGTAAAACTGGTCAATGTGGTTGGGGCCACAGAACCTCAGCTGGGCCACCAGGGCCACAACCAGTCCATCTACCATAAATCCAGAGAGCCAGGTTGTGACCACCAGCCCCATGTACCGTCTGGGCCCCATCAGGAGTGGGTAGTGGAGTGGGTAGCAAATTGCCAGGTAGCGGTCATATGCCATGATAGCCAGCAGTAAGCATTCAGCTGTGGCTAGAGAGCCGAAGATAAAGAACTGGAGCAAGCAACCAGCCACAGAGATGGTTGCTTCTTGCAGGAAGCCCTCCAGCATTTTTGGCATCACTGCGGAGGTGTAGAGAATATCCAGGAAGGACAGATTCGCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29934368 837 + 172585720 ACCAAGTTACTCC-TCTCCAGCCCATCCTGGAAGAATTCCCAATGGAGGTGTCTGAAGTCCAAAATAA-AATCTTCTTCATTACACTC---CTTCAATCAAGT---------GTTTGTTTGATACAGAGAATCTTCCGAAGTGCCTGATGTACCACCTTGTTCCTCAGGGTGTAGATCACAGGATTGAAGAGAGGGGTGACCACAGTGTAGAGCAGAGAGAAGACCTT-GGAGAGGTTCTGGGAGTGGACAGCAGAGGGTGCAATGTATAAGGTCATGAGCGTTCCATAGAATGTGGTCACTACAGCTAGGTGGGAAGAGCATGTGGAGAAAGCTTTTCTCCTGCTTGCCCCAGCAGGAACTCTCAGCACTGCCACCACAATTCTGCCATAAGATGTCAGAATCAGTCCAAAGGGAATAGTGAGGCAGAACACAGACAGAACGAGAGTTGTCACCTGAGCCACTCTGGGATCCGAGCAAGCCAGGCCCACTAAAGGCATAAAGTCACAGTAAAACTGGTCAATGTGGTTGGGGCCACAAAACCTCAGCTGGGCCACCAGGGCCACAACCAGTCCATCTACCATACATCCAGAGAGCCAGGTTGTGACCACCAACCCCATGCACCGTCTGGGCCCCATCAGGAGTGGGTAGTGGAGTGGGTAGCAAATTGCCAGGTAGCGATCATATGCCATGACAGCTAACAGTAAGCATTCAGCTGTGGCTAGAGAGCCAAAGATAAAGAACTGGAGCAAGCAACCAGCCACAGAGATGGTTGCTTCTTGCAGGAAGCCCTCCAGCATTTTTGGCATCACTGTGGATGTGTAGAGAATCTCCAGGAAGGACAGATTAACCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29598298 837 - 170955103 ACCAAGTTACTCC-TCTCCAGCCCATCCTGGAAGAATTCCCAATGGAGGTGTCTGAAGTCCAAAATAA-AATCTTCTTCATTACACTC---CTTCAATCAAGT---------GTTTGTTTGATACAGAGAATCTTCCGAAGTGCCTGATGCACCACCTTGTTCCTCAGGGTGTAGATCACAGGATTGAAGAGAGGGGTGACCACAGTGTAGAGCAGAGAGAAGACCTT-GGAGAGGTGCTGGGAGTGGACAGCAGAGGGTGCAACGTATAAGATCATGAGCGTTCCATAGAATGTGGTCACTACAGCTAGGTGGGAGGAGCATGTGGAGAAAGCCTTTCTCCTGCTTGCCCCAGCAGGAACTCTCAGCACTGCCACCACAATTCTGCCATAAGATGTCAGAATCAGTCCAAAGGGAATAGTGAGGCAGAACACAGACAGAACGAGAGTTGTCACCTGAGCCACTCTGGGATCCGAGCAAGCCAGGCCCACTAAAGGCATAAAGTCACAGTAAAACTGGTCAATGTGGTTGGGGCCACAAAACCTCAGCTGGGCCACCAGGGCCACAACCAGTCCATCTACCATACATCCAGAGAGCCAGGTTGTGACCACCAACCCCATGCACCGTCTGGGCCCCATCAGGAGTGGGTAGTGGAGTGGGTAGCAAATTGCCAGGTAGCGATCATATGCCATGACAGCTAACAGTAAGCATTCAGCTGTGGCTAGAGAGCCAAAGATAAAGAACTGGAGCAAGCAACCAGCCACAGAGATGGTTGCTTCTTGCAGGAAGCCCTCCAGCATTTTTGGCATCACTGTGGATGTGTAGAGAATCTCCAGGAAGGACAGATTAACCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2594443 836 -   2996164 -CCAAGTTACTCC-TCTCCAGCCCATCCTGGAAGAATTCCCAATGGAGGTGTCTGAAGTCCAAAATGA-AATCTTCTTCATTACTCTC---CTTCAATCAAGT---------GTTTGTTTGATACAGAGAATCTTCCGAAGTGCCTGATGTACTGCCTTGTTCCTCAGGGTATAGATCACAGGATTGAAGAGAGGGGTGACCACAGTGTAGAGCAGAGAGAAGACCTT-GGAGAGGTGCTGGGAGTGGACAGCAGAGGGTGCAACGTATAAGATCATGAGCGTTCCATAGAATGTGGTCACTACAGCTAGGTGGGAGGAGCATGTGGAGAAAGCCTTTCTCCTGCTTGCCCCAGCAGGAGCTCTCAGCACTGCCACCACAATTCTACCATAAGATGTCAGAATCAGTCCAAAGGGAATAGTGAGGCAGAACACAGACAGAACGAGAGTTGTCACCTGAGCCACTCTGGGATCCGAGCAAGCCAGGCCCACTAAAGGCATAAAGTCACAGTAAAACTGGTCAATGTGGTTGGGGCCACAGAACCTCAGCTGGGCCACCAGGGCCACAACCAGTCCATCTACCATAAATCCAGAGAGCCAGGTTGTGACCACCAACCCCATGCACCGTCTGGGCCCCATCAGGAGTGGGTAGTGGAGTGGGTAGCAAATTGCCAGGTAGCGATCATATGCCATGACAGCTAACAGTAAGCATTCAGCTGTGGCTAGAGAGCCAAAGATAAAGAACTGGAGCAAGCAACCAGCCACAGAGATGGTTGCTTCTTGCAGGAAGCCCTCCAGCATTTTTGGCATCACTGCGGATGTGTAGAGAATCTCCAGGAAGGACAGATTAACCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     355073 836 +    766320 -CCAAGTTACTCC-TCTCCAGCCCATCCTGGAAGAATTCCCAATGGAGGTGTCTGAAGTCCAAAATGA-AATCTTCTTCATTACTCTC---CTTCAATCAAGT---------GTTTGTTTGATACAGAGAATCTTCCGAAGTGCCTGATGTACCGCCTTGTTCCTCAGGGTATAGATCACAGGATTGAAGAGAGGGGTGACCACAGTGTAGAGCAGGGAGAAGACCTT-GGAGAGGTGCTGGGAGTGGACAGCAGAGGGTGCAACGTATAAGATCATGAGCGTTCCATAGAATGTGGTCACTACAGCTAGGTGGGAGGAGCATGTGGAGAAAGCCTTTCTCCTGCTTGCCCCAGCAGGAACTCTCAGCACTGCCACCACAATTCTGCCATAAGATGTCAGAATCAGTCCAAAGGGAATAGTGAGGCAGAACACAGACAGAATGAGAGTTGTCACCTGAGCCACTCTGGGATCCGAGCAAGCCAGGCCCACTAAAGGCATAAAGTCACAGTAAAACTGGTCAATGTGGTTGGGGCCACAGAACCTCAGCTGGGCCACCAGGGCCACAACCAGTCCATCTACCATAAATCCAGAGAGCCAGGTTGTGACCACCAACCCCATGCACTGTCTGGGCCCCATCAGGAGTGGGTAGTGGAGTGGGTAGCAAATTGCCAGGTAGCGATCATATGCCATGACAGCTAACAGTAAGCATTCAGCTGTGGCTAGAGAGCCAAAGATAAAGAACTGGAGCAAGCAACCAGCCACAGAGATGGTTGCTTCCTGCAGGAAGCCCTCCAGCATTTTTGGCATCACTGCGGATGTGTAGAGAATCTCCAGGAAGGACAGATTAACCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28813238 837 -  71996105 ACAAAGTTACTCC-TCTCCAGCCCATCCTGGAAGAATTCCCAATGGAGGTGTCTGAAGTCCAAAATAA-AATCTTCTTCATTACTCTC---CTTCAATCAAGT---------GTTTGTTTGATACAGAGAATCTTCCGAAGTGCCTGATGTACCGCCTTGTTCCTCAGGGTATAGATCACAGGATTGAAGAGAGGGGTGACCACAGTGTAGAGCAGGGAGAAGACCTT-GGAGAGGTGCCGGGAGTGGACAGCAGAGGGTGCAACATATAAGATCATGAGAGTTCCATAGAATGTGGTCACTACAGCTAGGTGGGAAGAGCATGTGGAGAAAGCCTTTCTCCTGCTTGCCCCAGCAGGAACTCTCAGCACTGCCATCGCAATTCTGGCATAAGATGTCAGAATCAGTCCAAAAGGAACAGTGAGGCAGAACACAGACAGAATGAGAGTTGTCACCTGAGCCACTCTGGGATCCGAGCAAGCCAGGCCCACTAAAGGCATAAAGTCACAGTAAAACTGGTCAATGTGGTTGGGGCCACAGAACCTCAGCTGGGCCACAAGGGCCACAACCAGTCCATCTACCATAAATCCAGAGAGCCAGGTTGTGACCACCAACCCCATGCACCGTCTGGGCCCCATCAGGAGTGGGTAGTGGAGTGGGTAGCAAATTGCCAGGTAGCGATCATATGCCATGACAGCTAACAGTAAGCATTCAGCTGTGGCTAGAGAGCCAAAGATAAAGAACTGGAGCAAGCAACCAGCCACAGAGATGGTTGCTTCTTGCAGGAAGCCCTCCAGCATTTTTGGCATCACTGTGGATGTGTAGAGAATCTCCAGGAAGGACAGATTAACCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     328416 836 -    352859 -CCAAGTTACTCC-TCTCCAGCCCATCCTGGAAGAATTCCCAATGGAGGTGTCTGAAGTCCAAAATGA-AATCTTCTTCATTACTCTC---CTTCAATCAAGT---------GTTTGTTTGATACAGAGAATCTTCCGAAGTGCCTGATGTACCGCCTTGTTCCTCAGGGTATAGATCACAGGATTGAAGAGAGGGGTGACCACAGTGTAGAGCAGAGAGAAGACCTT-GGAGAGGTGCTGGGAGTGGACAGCAGAGGGTGCAACGTATGAGATCATGAGCGTTCCATAGAATGTGGTCACTACAGCTAGGTGGGAGGAGCATGTGGAGAAAGCCTTTCTCCTGCTTGCCCCAGCAGGACCTCTCAGCACTGCCACCACAATTCTGCCATAAGATGTCAGAATCAGTCCAAAGGGAATAGTGAGGCAGAACACAGACAGAATGAGAGTTGTCACCTGAGCCACTCTGGGATCCGAGCAAGCCAGGCCCACTAAAGGCATAAAGTCACAGTAAAACTGGTCAATGTGGTTGGGGCCACAGAACCTCAGCTGGGCCACCAGGGCCACAACCAGTCCATCTACCATAAATCCAGAGAGCCAGGTTGTGACCACCAACCCCATGCACTGTCTGGGCCCCATCAGGAGTGGGTAGTGGAGTGGGTAGCAAATTGCCAGGTAGCGATCATATGCCATGACAGCTAACAGTAAGCATTCAGCTGTGGCTAGAGAGCCAAAGATAAAGAACTGCAGCAAGCAACCAGCCACAGAGATGGTTGCTTCTTGCAGTAAGCTCTCCAGCATTTTTGGCATCACTGCGGATGTGTAGAGAATCTCTAGGAAGGACAGATTAACCA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2424203 837 -   3067355 ACAAAGTTACTCC-TCTCCAGCCCATCCTGGAAGAATTCCCAATGGAGGTGTCTGAAGTCCAGAATAA-AATCTTCTTCATTACTCTC---CTTCAATCAAGT---------GTTTGTTTGATACAGAGAAGCTTCCCAAGTGCCTGATGTACCACCTTGTTCCTCAGGGTATAGATCACAGGATTGAAGAGAGGGGTGACCACAGTGTAGAGCAGGGAGAAGACCTT-GGAGAGGTGCTGGGAGTGGACAGCAGAGGGTGCAACATATAAGATTATGAGCGTTCCATAGAATGTGGTCACTACAGCTAGGTGGGAGGAGCATGTGGAGAAAGCCTTTCTCCTGCTTGCCCCAGCAGGAACTCTCAGCACTGCCACCACAATTCTGGCATAAGATGTCAGAATCAGTCCAAAAGGAATAGTGAGGCAGAACACAGACAGAATGAGAGTTGTCACCTGAGCCATTCTGGGATCCGAGCAAGCCAGGCCCACTAAAGGCATAAAGTCACAGTAAAACTGGTCAATGTGGTTGGGGCCACAGAACCTCAGCTGGGCCACCAGGGCCACAACCAGTCCATCTACCATAAATCCAGAGAGCCAGGTTGTGACCACCAACCCCATGCACCGTCTGGGCCCCATCAGGAGTGGGTAGTGGAGTGGGTAGCAAATTGCCAGGTAGCGATCATATGCCATGACAGCTAATAGTAAGCATTCAGCTGTGGCTAGAGAGCCAAAGATAAAGAACTGGAGCAAGCAACCAGCCACAGAGATGATTGCTTCTTGCAGGAAGCCCTCCAGCATTTTTGGCATCACTACGGATGTGTAGAGAATCTCCAGAAAGGACAGGTTAACCA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     449780 839 +    730504 ACAAAGTTCCTCC-CTTCCAACTAATCCTGGAAGACTTCCCAATGGAGGTGTCCAAAATCC-AAACAG----AATCTTCACTACCCTC---CTTCAATCAAGT---GCTTCAGTTTGTTTAATGGAGAGAATCCTCCGTAATACCTGATGAACCTCCTTGTTCTTCAGGGTGTAGATCACAGGATTGAAGATGGGGGTGACCACGGTGTAAAGCAGGGAAAAGACCTT-GGAGAGGAGCTGGGAGTGGACAGCAGAGGGTGCAGTGTACAAGACCATGAGCGTTCCATAGAATGTGGACACTACAGCTAGGTGAGACGAGCATGTGGAAAAAGCCTTTCTCCTGCTGGCCCCAGCAGGAACTCTCAGCACTGCTACCATGATCCGAGCATAAGATGTCAGAATCAGTCCAAAGGGAACACTGAGGCAGACCACAGAAAGAATGAATGTTGTCACCTGGGCTACTCTGGGATCCGAGCAAGCCAGGCCCACCAAAGGCATGAAGTCACAATAAAAGTGGTCAATGTGGTTGGGGCCGCAGAATCTCAGCTGGGCCATCAGGGCCACAACCAGTCCATCTACCATGAAGCCAGAGAACCAGGCTGTGACCACCAGCCCCAAGCACCATCTGGGCCCCATCAGGAGTGGGTAGCGGAGTGGGTAGCAGATTGCCAGGTAGCGATCATATGCCATGACAGCCAGCAGGAAGCATTCAGCTGTGGCTAAAGAGCCAAAGACAAAGAACTGGAGCAAACAAGCAGCCACAGAGATGGCTGCCTCTTGCAGGAAGCCCTCCAGCATTTTTGGCATCACTGTGGAGGTATAGAGGATCTCCAGGAAGGACAGGTTAGCCA
i proCoq1.NW_012152574v1   I 86 C 0
s otoGar3.GL873742          2122413 843 -   2232465 ACAAAATTCTTCC-TTTCCGGTCAATCCTGGAAGAATTCCCAATGGAAGTGTCCAAAGTCCAAAATAA----AATCTTCAGTACCCTCCTTCTTCAATCGAGT---GCTTCAGTTTGTTTAATATAGAGAATCCTCAGTAGTGCCTGATGAACCTCCTTGTTCTTCAGGGTGTAGATCACAGGATTAAAGATGGGGGTGACCACAGTATAAAGGAGGGAAAACACCTT-AGAGAGGAGCTGGGAGTGGACAGCAGAGGGTGCAGCATACAAGACCATGAGAGTTCCATAAAATGTGGACACTACAGCTAGGTGAGAGGAGCATGTCGAAAGAGCCTTTCTCCTACTGGTTCCAGCAGGAACTCTCAGCACTGCTACCATGATCCGAGCATAAGATGTCAGAATCAGTCCAAAGGGAACACTGAGGCAGACCACAGAAAGAATGAACGTTGTCACCTGGGCCACTCTGGGATTTGAGCAAGCCAGGCCTACCACTGGCATGAAGTCACAGTAAAAGTGATCAATGTGGTTGGGGCCACAGAATCTCAGCTGGGCCATCAGGGCTACAACCAGTCCGTCTACCATGAATCCAGAGAACCAGACTGTGACCACCAGCCCCAAACACCATCTGGGCCCCATCAGGAGTGGGTAGTGGAGTGGGTAGCAGATGGCCAGGTAGCGATCATAGGCCATGACAGCCAGCAGAAAGCATTCAACTGTGGCTAGAGAGCCAAAGACAAAGAACTGGAGCAAGCAAGCAGCCACAGAGATGGTGGCCTCTTGCAGGAAGCCCTCCAGCATTTTTGGCATCACTGTGGAGGTATAGAGGATCTCCAGAAAGGATAGATTAGCCA
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57761110 842 -  94987271 AAACAGTTACTCCATCTCTAGCCCATTGTGGGAGACTTTTCAATCAAGATACTGACAGTCAAATAGAA----AATCTTCACTGCCCTC---CTTC--TTAGGTCACATTTCAGTTGGTTTGCAGTAGAGAAGCCTTCTTAGTGCCTGCTGCACCTCCTGGTTCCTCAAGGTGTAGATGACAGGGTTGAAGATGGGAGTGACCACTGTGTAGAGCAGGGCAATGACCTT-GGAGAGGAGCTGAGAATGAACAGCAGAGGGCACAATGTACAATACCATGAGTGTTCCATAGAACGTGGACACCACAGCCAGGTGAGAGGAGCATGTGGAGAAGGCCTTGGTTCTTCTGGTCCCAGAAGGAACTCTCAGCACAGTCACTACAATCTGAGCATAGGAGATCAGAACCAGCCCAAAGGGGACAGTCAGGAAGACCACAGAGAGAACAAATGTAGTCACCTGGGCCACTTGGGTATCTGAGCAAGCCAGGACCATCAAAGGTGAAAAATCACAGTAAAAGTGATCAACTAAGTTGGGGCCACAGAATCTCAACTGGGCCATCAGAGCAACAACTAGTCCATCTACCATGAAGCCAGACAGCCAGACTGTGAGCACCAACCCCAGGCACCATTGAGGCCCCATGAGGTGTGGGTATCGTAGAGGGTGACAAATTGCGAGATATCGATCATATGCCATCACAGCCAGCAGAAAACACTCATCTGTGGCCAGAGAGCCAAAAACAAAGAACTGGAGCAAGCAGCCAGCCACAGATATGGTGGCCTCCTGTAAGAAGCCTTCCAGCATTTTGGGCACCACTGTGGAGGTATAGACAATCTCTATGAAGGACAGATTCACCA
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           192713 843 -    254539 ATAAAGTTATTCT-TCTCCACTCAATCTT-TAAGACTTCCCTTTGGAGATGTGCAAAGTCCAAAACAAAAATCTTCGCCACCCTCCTC---CTTCACTCAGGT---GCTTCAGTTTGCCTAATGTAGAGAAGCCTCCGCAGTGCCCGGTGAACCTCCTTGTTCCTCAGGGCATAAACCATGGGGTTGAAGATGGGGGTGGGCACCATGTAGAGCAGGGAACAGACCTTGGGAGAGGAGCAGAGAGTGGACAGTAGGGGGTTCAATATACAAAATCATGAGGGTTCCATAGAAGGTGGACACTACAACCAGGTGAGAGGAGCAGGTGAAGAAAGCTTTCCTCCTGCTGGCCCCATCAGGAACTCTCAGCACGGCCACCAGGATCTGGGGATAAGATGTCAGGATCAGTCCAAAGGGAACAGCGAAGCAGACCATGGAGAGAACAGATGTTGTCACCTGGGCCACACTGGGATCCGAGCAAGCCAGCTCTGCCAGGGGCATGAAGTCACAGTAAAAGTGGTCAATGTGGTTGAGACTGCAGAACTTCAGCTGCACCATCAAGGCCACAATGAGTCCATCTACCAGGAAGCCAGAGAGCCAGGATGCTAGCACCAGCCCCAAGC-CCATCTGGGGCTCATCAGGAGAGGGTAGCAGAGTGGGTAGCAGACCACAAGGTAACAATCATTTGCCATGACGGCCAGCAGGAAGCACTCAGCCGTGGCTAGAGAGCCAAAGACAAAGAACTGGAACAAGCACCCAGCCATGGAAATGGTTGATTCCTGCAAGAAGCTCTCCAGCATTTTGGGCACTACTGTGGAAGTTTGGAGGAGTTCCAGGAGGGACAGACCAGCCA
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I

a score=3004451.000000
s hg38.chr6_GL000254v2_alt   692816 467 +   4827813 AGAAAATATACATGGGTTTGTGGAGCCTCTGGGAGCTAACCACTGCTACAATAATCAGCATATTCCCTATGATGATGAAGACATAGACAGCAGTGAATACAATAAAAAACAAGAAATGCAGTTCAGGGATGTCATAGAAGCCAAGGAGGACAAATTCAGTAATAGTTTCGTTTCCTGTGGAGACAATTTCCATGTCGATCGTCCAAGTTTCTGCTTGG----CAATAATTGGGGGAGAAATTTTAGCATGTCTCTGCATCTTCTATACCAAGCCTAACGTTATTAGAGCTaaaacaaaacaaaacaaaaaagacaaaaATGAGTCTCT-----AAAACAAGACTCGCTCACGCAAGTCTTCAACTATCCCCCTTCTTAGTTGTCATTCCTTCCTCAACTCTCATCCTTCCCTGCCTTCCTTAATTGTGCATATTCTTTAACGCTCAGAAGAGTTTATCCAAACTCATAATTTTAGT
s panTro5.chr6             29666290 467 + 175400573 AGAAAATATACATTGGTTTGTGGAGCCTCTGGGAGCTAACCACTGCTACAATAATCAGCATATTCCCTATGATGATGAAGACATAGACAGCAGTGAATACAATAAAGAACAAAAAATGCAGCTCAGGGATGTCATAGAAGCCAAGGAGGACAAATTCAGTAATAGTTTTGTTTCCTATGGAGACAATTTCCATGTCGATCGTACAAGTTTCTGCTTGG----CAATAATTGGGGGAGAAATTTTAGCATGTCTCTGTATCTTCTATACCAAGCCTAAGGTTATTAGAGCTaaaacaaaacaaaacaaaaaggacaaaaATGAGTCTCT-----AAAACAAGAATCGCTCATGCAAGTCTTCAACTATCCCCCTTCTTGGTTGTCATTCCTTCCCCAACTCTCATCCTTCCCTGCCTTCCTTAATTGTGCATATTCTTTAAGGCTCAAAAGAGTTTATCCAAATTCATAATTTTAGT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5707364 466 +   6154872 AGAAAATATACATGGGTTTGTGGAGCCTCTGGGAGCTAACCACTGCTACAATAATCAGCATATTCCCTATGATGATGAAGACATAGACAGCAGTGAATACAATAAAAAACAAGAAATGCAGCTCA-GGATGTCATAGAAGCCAAGGAGGACAAATTCAGTAATAGTGTCGTTTCCTGTGGAGACAATTTCCATGTCGATCGTCCAAGTTTCTGCTTGG----CAATAATTGGGGGAGAAATTTTAGCATGTCTCTGCATCTTCTATACCAAGCCTAAGGTTATTAGAGCTaaaacaaaacaaaacaaaaaagacaaaaATGAGTCTCT-----AAAACAAGACTCGCTCACGCAAGTCTTCAACTATCCCCCTTCTTAATTGTCATTCCTTCCCCAACTCTCATCCTTCCCTGCCTTCCTTAATTGTGCATATTCTTTAACGCTCAAAAGAGTTTATCCAAACTCATAATTTTAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29935205 466 + 172585720 AGAAAATATACATGGGTTTGTGGAGCCTCTGGGAGCTAACCACTGCTACAATAATCAGCATATTCCCTATGATGATGAAGACATAGACAGCAGTAAATACAATAAAGAACAAGAAATGCAGCTCAGGGATGTCATAGAAGCCAAGGAGGACAAATTCAGTAATAGTTTCGTTTCCTGTGGGGATAATTTCCATGTCGATCATCCAAATTTTTGCTTGG----CAATAATTGAGGGAGAAATTTTAGCGTGTCTCTATATCTTCTATACCAAGCCTAAGGTTATTAGAGCTaaaacaaaacaaagcaaaaaagacaaaaATGAGTCTCT-----AAAACAAGAATCGCTCACACAAGTCTTCAACTATCCCCCTTCTTAGTTGTCATTCCTTCCCCAACTCTCA-CCTTCCCTGCCTTCCTTAATTGTGCGTATTCTTTAAGGCTCAAAAGAGTTTATCCAAATTCATAATTTTAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29599135 466 - 170955103 AGAAAATATACATGGGTTTGTGGAGCCTCTGGGAGCTAACCACTGCTACAATAATCAGCATATTCCCTATGATGATGAAGACATAGACAGCAGTAAATACAATAAAGAACAAGAAATGCAGCTCAGGGATGTCATAGAAGCCAAGGAGGACAAATTCAGTAATAGTTTCGTTTCCTGTGGGGATAATTTCCATGTCGATCATCCAAATTTCTGCTTGG----CAATAATTGGGGGAGAAATTTTAGCGTGTCTCTATATCTTCTATACCAAGCCTAAGGTTATTAGAGCTaaaacaaaacaaagcaaaaaagacaaaaATGAGTCTCT-----AAAACAAGAATCGCTCACACAAGTCTTCAACTATCCCCCTTCTTAGTTGTCATTCCTTCCCCAACTCTCA-CCTTCCCTGCCTTCCTTAATTGTGCGTATTCTTTAAGGCTCAAAAGAGTTTATCCAAATTCATAATTTTAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2595279 466 -   2996164 AAAAAATATACATGGGTTTGTGGAGCCTCTGGGAGCTAACCACTGCTACAATAATCAGCATATTCCCTATGATGATGAAGACATAGACAGCAGTGAATACAATAAAGAACAAGAAATGCAGCTCAGGGATGTCATAGAAGCCAAGGAGGACAAATTCAGTAATAGTTTCGTTTCCTGTGGGGACAATTTCCATGTCGATCATCCAAGTTTCTGCTTGG----CAATAATTGGGGGAGAAATTTTAGCGTGTCTCCGTATCTTCTATACCAAGCCTAAGGTTATTAGAGCTaaaacaaaacaaagcaaaaaagacaaaaATGAGTCTCT-----AAAACAAGAATCGCTCACACAAGTCTTCAACTATCCCCCTTCTTAGTTGTCATTCCTTCCCCAACTCTCA-CCTTCCCTGCCTTCCTTAATTGTGCGTATTCTTTAAGGCTCAAAAGAGTTTATCCAAATTCATAATTTTAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     355909 466 +    766320 AAAAAATATACATGGGTTTGTGGAGCCTCTGGGAGCTAACCACTGCTACAATAATCAGCATATTCCCTATGATGATGAAGACATAGACAGCAGTGAATACAATAAAGAACAAGAAATGCAGCTCAGGGATGTCATAGAAGCCAAGGAGGACAAATTCAGTAATAGTTTCGTTTCCTGTGGGGACAATTTCCATGTCGATCATCCAAGTTTCTGCTTGG----CAATAATTGGGGGAGAAATTTTAGCGTGTCTCCGTATCTTCTATACCAAGCCTAAGGTTATTAGAGCTaaaacaaaacaaagcaaaaaagacaaaaATGAGTCTCT-----AAAACAAGAATCGCTCACACAAGTCTTCAACTATCCCCCTTCTTAGTTGTCATTCCTTCCCCAACACTCA-CCTTCCCTGCCCTCCTTAATTGTGCGTATTCTTTAAGGCTCAAAAGAATTTATCCAAATTCAAAATTTTAGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28814075 466 -  71996105 AGAAAATATACATGGGTTTGTGGAGCCTCTGGGAGCTAACCACTGCTACAATAATCAGCATATTCCCTATGATGATGAAGACATAGACAGCAGTGAATACAATAAAGAACAAGAAATGCAGCTCAGGGATGTCATAGAAGCCAAGGAGGACAAATTCAGTAATAGTTTCATTTCCTGTGGGGACAATTTCCATGTCGATCATCCAAATTTCTGCTTGG----CAATAATTGGGGAAGAAAATTTAGCGTGTCTCTGTATCTTCTATACCAAGCCTAAGGTTATTAGAGCTaaaacaaaacaaagcaaaaaagacaaaaATGAGTCTCT-----AAAACAAGAATCGCTCACAAAAGTCTTCAACTATCCCCCTTCTTAGCTGTCATTCCTTCCCCAACTCTCA-CCTTCCCTGCCTTCCTTAATTGTGCGTATTCTTTAAGGCTCAAAAGAATTTATCCAAATTCATAATTTTAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     329252 466 -    352859 AAAATATATACATGGGTTTGTGGAGCCTCTGGGAGCTAACCACTGCTACAATAATCAGTATATTCCCTATGATGATGAAGACATAGACAGCAGTGAATACAATAAAGAACAAGAAATGCAGCTCAGGGATGTCATAGAAGCCAAGGAGGACAAATTCAGTAATAGTTTCGTTTCCTGTGGGGACAATTTCCATGTCGATCATCCAAGTTTCTGCTTGG----CAATAATTGGGGGAGAAATTTTAGCGTGTCTCCGTATCTTCTATACCAAGCCTAAGGTTATTAGAGCTaaaacaaaacaaagcaaaaaagacaaaaATGAGTCTCT-----AAAACAAGAATCGCTCACACAAGTCTTCAACTATCCCCCTTCTTAGTTGTCATTCCTTCCCCAACTCTCA-CCTTCCCTGCCTTCCTTAATTGTGCGTATTCTTTAAGGCTCAAAAGAATTTATCCAAATTCATAATTTTAGT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2425040 466 -   3067355 AGAAAATATACATGGGTTTGTGGAGCCTTTGGGAGCTAACCACTGCTACAATAATCAGCATATTCCCTATGATGATGAAGACATAGACAGCAGTGAATACAATAAAGAACAAGAAATGCAGCTCAGGGATGTCATAGAAGCCAAGGAGGACAAATTCAGTAATAGTTTCGTTTCCTGTGGGGACAATTTCCATGTTGATCATCCAAGTTTCTGCTTGG----TAATAATTGGGGGGGAAATTTTAGCATGTTTCTATATCTTCTATACCAAGCCTAAGGTTATTAGAGCTaaaacaaaacaaagcaaaaaagacaaaaATTAGTCTCT-----AAAACAAGGATCGCTCACACAAGTCTTCAACTATCCCCCTTCTTAGTTGTCATTCCTTCCCCAACTCTCA-CCTTCCCTGCCTTCCTTAATTGTGCATATTCTTTAAGGCTCAAAAGAGTTTATCCAAATTCATAATTTTAGT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     450619 456 +    730504 GAAAGAAATACATGGGTTTGTGGAGCCTCCGGGAGCTAATCACTGCCACAATGATCAGCATATTCCCTACGACGATGGATGCATAGACAACAGCGAACACAATAAAGAACAGGAAATGCAGCTCAGGGATGTCATAGAAGCCAAGGAGGACAAATTCAGTAACAGTTTCATTTCCTATATAGACAATTTCCATGTGGATCATCTAAG-TTCTGCTTGG----CAGTAATTTGAAGAAAAATTTTAGTGAGTCTCTATATCTTCTACAACAAGCCTCAGATCAATAGGGCTAAAA----------TAAAAAAGATAAAAGTGAGCCTCC-----AAAACAAGGATTACTCACACAAGTCTTCATCTGTTCCTGCTGTTAGTTGTCACTCCTTTCCCAACTCCCATCCTTCCCGGCCTTCCTTCATTGTGCATATTCTTTAAGGCTCAAGAGAGTTTATCCAACTTCATAATTTTAGT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2123256 456 -   2232465 GAAAGAAATACATGGGTTTGTGGAGCCTCTGGGACCTAATCACTGCCATGATTATCAGCATATTCCCTGTGATGATGGAGGCGTAGATGACAGTGAATATAATAAAGAACAGTAGATGCAGCTCAGGGACGTCGTAGAAGCCAAGGAGGACAAATTCAGTAATAGTTTGGTTTCCTATGGAGACAATTTCCATGTGCATCATCTACG-TTTTGCTTTTCTTCCAGTAACTGGAAGAAAAATTTTAGTGTGTCTATGTATCTTCTATACCAAGTCTCATATTGATAGAGCTAAAA----------TAAAAAAGGTAAAAATAAGCCTCC-----AAAATAAGGATTACTCATATAAGTCCTTATTTGTCCCCCTTGTTGGTTGTCACTCCTTCCCCAGCTCCCATCCTTCCTCACTTTCCTTCATTGTGCATATTCTTCAAGGCTCA----AGTTCATACAAATTCATAATTTTAGT
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57761952 430 -  94987271 GAAAGAAATACATGGGTGTGTGAAGCCTCTGGGAGCTCACCACCACCACTGCAATGAGCATGTTCCCTGTGATGATGGAGGCATAGAGGATGGTGAACACAGAAAAAAACAGGAGGTGCAGCCCAGGGACTTCATGGAAACCAAGAAGTACAAACTCAGTGACAGTTTGATTTCCTGTGGAAAGGATTCCCATG--GGATATTCAGTTTTCTGCTTGG----C-----TTGACAG----------GTGTGTCTCTG--TTTTCTGTTGCAATTCTAAGACTGACCAGGCTAAAACAA--------AAAGATGACA-----GAGTATTA-----AAAATGAGGATGGGTTAAACTAGCCTTTATCTTTCTCTTCTTTTAACTATCACCACTTC----ATCTCCA-CTTTCTCCATTCTCTTTAAGGTAGCATACTCCTAATGGCCTAGGGGAGCTTACCCATATTCAAAATTTCAAT
i mm10.chr17               C 0 I 3602
s dasNov3.JH569098           193556 452 -    254539 GGAAGAAATACATGGGAGTGTGGAGCCTCTGGGAGCTAATCACTGCCACAAGGATTAGCATGTTCCCCATG--GATGGAGACATAGATGACAGTGAGCACAACAAAGAAAGGGAGGGGCAGTTCAGGGATGTCATAGAAGCCAAGGAGGACAAATTCAGTAATAGACTGGTTTTCTATGGAGGCGATTCCCATGTGGACCATCCAAGTTTCTCCTTGG----CAATGATTAGGGGAGAAATTTTACTGTCGCTCTGTATCTTCTACACTAAACCTAGGACCAGTGGGCTTAAAA-----------GAAAAAGATCAGAGTGAGTCTCCAAAAAAAAAAAAAAATCACTTGCACAAGTCCTCATCTGTCCCTCTTTTTAATTG------CTTCCCTTACTCTAATTCCTCCCTGCATTCCTTAATTGTGGGTATTCCCCAAGGCTCAGAA-TGTTTATCCAAACTCACTATTTCAGT
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512   0 + 173848474 C

a score=27522.000000
s hg38.chr6_GL000254v2_alt   693283 4 +   4827813 CTTT
s panTro5.chr6             29666757 4 + 175400573 CTTT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5707830 4 +   6154872 CTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29935671 4 + 172585720 CTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29599601 4 - 170955103 CTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2595745 4 -   2996164 CTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     356375 4 +    766320 CTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28814541 4 -  71996105 CTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     329718 4 -    352859 CTTT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2425506 4 -   3067355 CTTT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     451075 4 +    730504 CTTT
i proCoq1.NW_012152574v1   C 0 I 165
s otoGar3.GL873742          2123712 4 -   2232465 TTTT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           194008 4 -    254539 CTTT
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57762382 3602 -  94987271 I
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512 0 + 173848474 C

a score=593943.000000
s hg38.chr6_GL000254v2_alt   693287 135 +   4827813 CAAAGACCTTTACCCCATTAATTCAATCTACTACCTCTTTCGCATAATCACCTCTATCATTCTTATCTGTATAGTCAGCCATAGCCTCCTTCTTGTGC---ACCAGTATAATATTCTCCAAATGTGTGC-TATATAGAC
s panTro5.chr6             29666761 136 + 175400573 CAAAGACCTTTACCCCATTAATTCAATCTACTACTTCTATCGCATAATCAACTCTATCATTCTTATCTGTGTAGTCAGCCGTAGCCTCCTTCTTGTGC---ATCAGTGTAATATTCTCCAAATGTGTGAATATATAGAC
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5707834 135 +   6154872 CAAAGACCTTTACCCCATTAATTCAATCTACTACCTCTTTCGCATAATCAACTCTATCATTCTTATCTGTATAGTCAGCCATAGCCTCCTTCTTGTGC---ACCAGTATAATATTCTCCAAATGTGTGA-TATACAGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29935675 127 + 172585720 CAAAGACCTTTACCCCATTTATTCAATCTACTACCTCTATCACATAATCAGCTCTATTATTCTTATCTATATAGTCAGCCACAGCCTTCTTCTT-----------GTGTAATATTCTCCAAATGTGTGA-TAGAGAGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29599605 127 - 170955103 CAAAGACCTTTACCCCATTTATTCAATCTACTACCTCTATCACATAATCAGCTCTATTATTCTTATCTATATAGTCAGCCACAGCCTTCTTCTT-----------GTGTAATATTCTCCAAATGTGTGA-TAGAGAGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2595749 135 -   2996164 CAAAGACCTTTACCCCATTTATTCAATCTACTACCTCTATCACATAATCAGCTCTATTATTCTTATCTATATAGTCAGCCACAGCCTTCTTCTTGTGC---ACCAGTGTAATATTCTCCAAATGTGTGA-TAGAGAGAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     356379 135 +    766320 CAAAGACCTTTACCCCATTAATTCAATCTACTACCTCTATCACATAATCAGCTCTATTATTCTTATCTGTATAGTCAGCCACAGCCTTCTTCTTGTGC---ACCAGTGTAATATTCTCCAAATGTGTGA-TAGAGAGAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28814545 135 -  71996105 CAAAGACCTTTACCCCATTAATTCAATCTACTACCTCTATCACATAATCAGCTCTATTATTCTTATCTATATAGTCAGCCACAGCCTTCTTCTTGTGC---ACCAGTGTAATATTCTCCAAATGTGTGA-TAGAGAGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     329722 135 -    352859 CAAAGACCTTTACCCCATTAATTCAATCTACTACCTCTATCACATAATCAGCTCTATTATTCTTATCTGTATAGTCAGCCACAGCCTTCTTCTTGTGC---ACCAGTGTAATATTCTCCAAATGTGTGA-TAGAGAGAC
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2425510 135 -   3067355 CAAAGACCTTTACCCCATTAATTCAATCTACTACCTCTATCACATAATCAGCTCTATTATTCTTATCTATATAGTCAGCCACAGCCTTCTTCTTGTGC---ACCAGTGTAATATTCTCCAAATGTGTAA-TAGAGAGAC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2123716 127 -   2232465 TGAAGACCTTTACCCTTTTAATTCAATCTGCTACCTCTATCATGTAAT-AACTCCATCATCCCAATC--TATAATCTGCCATAGTCTCCTGC-TGTAC---ACCAGTGTAACATCTTCCACATGC-----TGGCTAGAA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           194012 136 -    254539 CAAAGTCCTTTATCCT-TTAGTTCAATCCACTATGTCTAACATATCATGAAGTTCACC-CCCCAATCTGTATAACCAGCCATAGGATCCCTCTTAAGCATTACCCACATAATATCTCCCAAATGCCTGC-TAGATGCAC
i dasNov3.JH569098         C 0 I 91
e mm10.chr17               57762382 3602 -  94987271 I
e proCoq1.NW_012152574v1     451079 165 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512   0 + 173848474 C

a score=163375.000000
s hg38.chr6_GL000254v2_alt   693422 42 +   4827813 ATGGCCCACAACTGCAAACTCTTCTATCTTTCTCAATCACAA
s panTro5.chr6             29666897 42 + 175400573 ATGGCCCACAACCGCAAACTCTTCTGTCTTCCTCAGTCACAA
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5707969 42 +   6154872 ATGGCGCACAACTGCAAACTCTTCTGTCTTTCTCAATCACAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29935802 42 + 172585720 ATGGCCCACAACCACAAACTCTTTTATTTTCCTCAATCACAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29599732 42 - 170955103 ATGGCCCACAACCACAAACTCTTTTATTTTCCTCAATCACAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2595884 42 -   2996164 ATGGCCCACAACCACAAATTCTTTTATTTTCCTCAATCTCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     356514 42 +    766320 ATGGCCCACAACCACAAATTCTTTTATTTTCCTCAATCTCAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28814680 42 -  71996105 ATGGCCCACAACCACAAACTCTTTTATTTTCCTCAATTACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     329857 42 -    352859 ATGGCCCACAACCACAAATTCTTTTATTTTCCTCAATCTCAA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2425645 42 -   3067355 ATGGCCCACAACCACAAGTTCTTTTATTTTCCTCAATCTCAA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2123843 40 -   2232465 ATGTCCCAATACAGCAAA--CTGTTATTTTTTCCAACCACCA
i otoGar3.GL873742         C 0 C 0
e mm10.chr17               57762382 3602 -  94987271 I
e dasNov3.JH569098           194148 91 -    254539 I
e proCoq1.NW_012152574v1     451079 165 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512  0 + 173848474 C

a score=636588.000000
s hg38.chr6_GL000254v2_alt   693464 128 +   4827813 CCAATTCCTCTATGAGTGGTTTGAGAATTCTGTCTAATCCCCATGGTCACTATCT-CATTCTTCTCATTATCTCAACCGCCCCTTTCATTCCCCATCTCCTAATCAGTGATACCTTACCAACTGTTCCT
s panTro5.chr6             29666939 128 + 175400573 CCAATTCCTCTATGAGTGGTTTGAGAATTCTGTCTAATTCCCATGGTCACTATCT-CATTCTTCTCATTATCTCAACCGCCCCTTTCATTCCCCATCTCCTAATCAGTGATATCTTACCAACTGTTCCT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5708011 128 +   6154872 CCAATTCCTCTATGAGTGGTTTGAGAATTCTGTCTAATTCCCATGTTCACTATTT-CATTCTTCTCATTATCTCAACTGCCCCTTTCATTCCCCATCTCCTAATCAGTGATACCTTACCAACTGTTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29935844 129 + 172585720 GCAATTCCTCTGTGAGTGGTTTGAGAATTCTGTCTAATTCCCATGGTCACTATCTACATTCTTCTCATTATCTCAAGCCCCTCTTTAATTCCCCATCTCCCAATCAGTGATATCTTACCAACTGTTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29599774 129 - 170955103 GCAATTCCTCTGTGAGTGGTTTGAGAATTCTGTCTAATTCCCATGGTCACTATCTACATTCTTCTCATTATCTCAAGCCCCTCTTTAATTCCCCATCTCCCAATCAGTGATATCTTACCAACTGTTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2595926 128 -   2996164 CCAATTCCTCTGTGAGTGGTTTGAGAATTCTGTCTAATTCCCATGGTCACTATCT-CATTCTTCTCATTATCTCAAGCCCCTCTTTAATTCCCCATCTCCCAATCAGTGATATCTTACCAACTGTTCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     356556 128 +    766320 CCAATTCCTCTGTGAGTGGTTTGAGAATTCTGTCTAATTCCCATGGTCACTATCT-CATTCTTCTCATTATCTCAAGCCCCTTTTTAATTCCCCATCTCCCAATCAGTGATATCTTACCAACTGTTCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28814722 128 -  71996105 CCAATTCCTCTGTAAGTGGTTTGAGAATTCTGTCTAATTCCCATGGTCACTATCT-CATTCTTCTCATTATCTCAAGCCCCACTTTAATTCCCCATCTCCCAATCTGTGATATCTTACCAACTGTTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     329899 128 -    352859 CCAATTCCTCTGTGAGTGGTTTGAGAATTCTGTCTAATTCCCATGGTCACTATCT-CATTCTTCTCATTATCTCAAGCCCCTTTTTAATTCCCCATCTCCCAATCAGTGATATCTTACCAACTGTTCCT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2425687 128 -   3067355 CCAATTCCTCTGTGAGTGGTTTGAGAATTCTGTCTAGTTCCCATGGTCACTATCT-CGTTCTTCTCATTATCTCAAACCCCTCTTTAATTCCCCATCTCCCAATCAGCGATATCTTACCAACTGTTCCT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     451244 127 +    730504 CCAATTCCTCCATGAGCGATTTGCAAATC-TGTCTGATTCCCATGGTCACTATCT-CATAGCCATCTTTATCTCACCCACCTCTTTCATTCCCCACCTCCCAAGCAGTGAAATCTTATAAACTGTTCCT
i proCoq1.NW_012152574v1   I 165 I 562
s otoGar3.GL873742          2123883 124 -   2232465 CCAAG---TCTATAAGTGGTTTGAAAGTTATGCCTGATTCTCATAATCACTATCT-CATAATCATCTTTATCTCATCCTCCTCTTTCATTCCCCACCTCCC-AGCTATGAAATCTTACAAACTATTTCT
i otoGar3.GL873742         C 0 C 0
e mm10.chr17               57762382 3602 -  94987271 I
e dasNov3.JH569098           194148  91 -    254539 I
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512   0 + 173848474 C

a score=984140.000000
s hg38.chr6_GL000254v2_alt   693592 230 +   4827813 CGGATAATTCTTATATATTCTTCACTTATTGCCT---------------------------------------------------------------------------TCCTTAAATAGTAGTTTCATCAAGTCATTCAGGAGTTGGtagtgaaaatgtggtaaatggtaatagggaaggaagtaggtgccatgggagcagagaaggaccaaacccagcctggggttgtggggcagaaggtgtggg-atcaaggtcggggaaggctttctgaagatagaagcaagtaggctaagttttgagggcc
s panTro5.chr6             29667067 230 + 175400573 TGGATAATTCTTATATGTTCTTCACTTTTTGCCT---------------------------------------------------------------------------TCCTTAAATAGTAGTTTCATCAAGTCATTCAGGAGTTGGTAGTGAAAATatggtaaatggtaatagggaaggaagtaggtgccatgggagcagagaaggaccaaacccagcctagggttgtggggcagaaggtgtggg-atcaaggttggggaaggctttctgaagatagaagcaagtaggctaagttttgagggcc
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5708139 230 +   6154872 TGGATAATTCTTATATATTCTTCACTTATTGCCT---------------------------------------------------------------------------TCCTTAAATAGTAGTTTCATCAAGTCATTCAGGAGTTGGTAGTGAAAATGTGGTAAATGGTAACAGGGAAGGAAGTAggtgccatgggagcagagaaggaccaaacccagcctggggttgtggggcagaaggtgtggg-atcaaggtcggggaaggctttctgaagatagaagcaagtaggctaagttttgagggcc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29935973 230 + 172585720 TGGATAATTCTTATATATTCTCCACTTTTTGCCT---------------------------------------------------------------------------TCCTTAAATAGTAATTTCATCAAGTCATTCAGGAGGTGGtagtgaaaatgtggtaaatggtaatagagaaggaagtcggtgctgtgggagcagagaaggaccaaacccaggctagggttgtggggcagaaggtatggg-gtcaaggtcagggaaggctttctgaagatagaagcaagtaggctaagttttgagggcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29599903 230 - 170955103 TGGATAATTCTTATATATTCTCCACTTTTTGCCT---------------------------------------------------------------------------TCCTTAAATAGTAATTTCATCAAGTCATTCAGGAGGTGGtagtgaaaatgtggtaaatggtaatagagaaggaagtcggtgctgtgggagcagagaaggaccaaacccaggctagggttgtggggcagaaggtatggg-gtcaaggtcagggaaggctttctgaagatagaagcaagtaggctaagttttgagggcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2596054 230 -   2996164 TGGATAATTCTTATATATTCTCTACTTTTTGCCT---------------------------------------------------------------------------TCCTTAAATAGTAATTTCTTCAAGTCATTCAGGAGGTGGtagtgaaaatgtggtaaatggtaatagagaaggaagtcggtgctgtgggagcagagaaggaccaaacccaggctagggttgtggggcagaaggtatggg-gtcaaggtcagggaaggctttctgaagatagaagcaagtaggctaagttttgagggcc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     356684 230 +    766320 TGGATAATTCTTATATATTCTCCACTTTTTGCCT---------------------------------------------------------------------------TCCTTAAATAGTAATTTCTTCAAGTCATTCAGGAGGTGGtagtgaaaatgtgataaatggtaatagagaaggaagtcagtgctgtgggagcagagaaggaccaaacccaggctagggttgtggggcagaaggtatggg-gtcaaggtcagggaaggctttctgaagatagaagcaagtaggctaagttttgagggcc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28814850 230 -  71996105 TGGATAATTCTTACGTATTCTCCACTTTTTGCCT---------------------------------------------------------------------------TCCTTAAATAGTAGTTTCATCAAGTCATTTAGGAGTTGGtagtgaaaatgtggtaaatggtaatagagaaggaagtcagtgctgtgggagcagagaaggaccaaacctagactaaggctgtggggcagaaggtgtggg-atcaaggtcagggaaggctttctgaagacagaagcaagtaggctaaattttgagggcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     330027 230 -    352859 TGGATAATTCTTATATATTCTCCACTTTTTGCCT---------------------------------------------------------------------------TCCTTAAATAGTAATTTCTTCAAGTCATTCAGGAGGTGGtagtgaaaatgtggtaaatggtaatagagaaggaagtcggtgctgtgggagcagagaaggaccaaacccaggctagggttgtggggcagaaggtatggg-gtcaaggtcagggaaggctttctgaagatagaagcaagtaggctaagttttgagggca
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2425815 229 -   3067355 TGGATAATTCTTATATATTCTCCACTTTTTGCCT---------------------------------------------------------------------------TCCTTAAAGAGTAGTTTCATCAAGTCATTCAGGAGTTGGtagtg-aaatgtggtaaatggtaatagagaaggaagtcggtgctgtgggagcagagaaggaacaaacccaggttagggttgtggggcagaaggtatggg-gtcaaggtcagggaaggctttctgaagatagaagcaagtaggctaagttttgagggcc
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2124007 291 -   2232465 TAGAAAATTC-TGTGTATTCTTTCCTCTCTATCTCATGCCTATAAGAGCACAATGACCCATTGTGTAGCCTTCTAGTCTCAAGTTTTTCCTGTCTCTTATCAAAATATCTCTTTAAATACTAGCTTCAGCAGGCCATTCAAGAGTCAAAAATGAAAACatgataaattataatgatgggagatgtaggtgctgtgggagcagagaaagcccaaacctaggctggggttgtggggtag-gggtatgggaatcaaggtca-------------gaagacagcagcatgtaggctaaattttaaaggcc
i otoGar3.GL873742         C 0 C 0
e mm10.chr17               57762382 3602 -  94987271 I
e dasNov3.JH569098           194148  91 -    254539 I
e proCoq1.NW_012152574v1     451371 562 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512   0 + 173848474 C

a score=14454.000000
s hg38.chr6_GL000254v2_alt   693822 4 +   4827813 aatt
s panTro5.chr6             29667297 4 + 175400573 tatt
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5708369 4 +   6154872 aatt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29936203 4 + 172585720 aatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29600133 4 - 170955103 aatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2596284 4 -   2996164 aatt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     356914 4 +    766320 aatt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28815080 4 -  71996105 aatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     330257 4 -    352859 aatt
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2426044 4 -   3067355 aatt
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57762382 3602 -  94987271 I
e dasNov3.JH569098           194148 91 -    254539 I
e proCoq1.NW_012152574v1     451371 562 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2124298 0 -   2232465 C
e panPan2.chr6             29904512 0 + 173848474 C

a score=84738.000000
s hg38.chr6_GL000254v2_alt   693826 322 +   4827813 aagagttggccaggaggcc-gggcttggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagatcgagaccatcctgactaacacagtgaaactccgtctctactaaaaatacaaaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgggatgccgaggcagaagaatggcgtgaactcaggaggcggagcttgcagtaagccgatatcgcgccactgcaccccagcctgggcaatagaacgaaactccatctcaaaaaaaaaaaaaaaaaaaaaaaa
s panTro5.chr6             29667301 321 + 175400573 aagagttggccaggcggcc-gggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtagatcacgaggtcaggagatcgagaccattctgactaacacagtgaaactccgtctccactaaaaataaaaaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgggatgccaaggcaagagaatggcgtgaactcaggaggcggagcttgcagtaagccgatatcgcgccactgcaccccagcctgggcaatagaacgaaactccatctcaaaaaaaaaaaaaaaaaaaaaaa-
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5708373 319 +   6154872 aagagttggccaggaggccggggcacggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggtggatcacgaggtcaggagatcgagaccatcctgattaacacagtgaaactccgtctctactaaaaatacaaaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgggatgcggaggcaggagaatggcgtgaactcaggaggcggagcttgcagtaagccgatatcgcgccactgcaccccagcctgggcaatagaacgaaactccatctcaaaaaaaaaaaaaaaaaaaa----
i gorGor5.CYUI01015250v1   C 0 C 0
e mm10.chr17               57762382 3602 -  94987271 I
e dasNov3.JH569098           194148  91 -    254539 I
e proCoq1.NW_012152574v1     451371 562 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2124298   0 -   2232465 C
e colAng1.NW_012115566v1    2426048   0 -   3067355 C
e manLeu1.NW_012099655v1     330261   0 -    352859 C
e chlSab2.chr17            28815084   0 -  71996105 C
e cerAty1.NW_012002711v1     356918   0 +    766320 C
e macNem1.NW_012011356v1    2596288   0 -   2996164 C
e macFas5.chr4             29600137   0 - 170955103 C
e rheMac8.chr4             29936207   0 + 172585720 C
e panPan2.chr6             29904512   0 + 173848474 C

a score=-309.000000
s hg38.chr6_GL000254v2_alt   694148 4 +   4827813 aaaa-
s otoGar3.GL873742          2124298 4 -   2232465 -agat
i otoGar3.GL873742         C 0 C 0
e mm10.chr17               57762382 3602 -  94987271 I
e dasNov3.JH569098           194148 91 -    254539 I
e proCoq1.NW_012152574v1     451371 562 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e colAng1.NW_012115566v1    2426048 0 -   3067355 C
e manLeu1.NW_012099655v1     330261 0 -    352859 C
e chlSab2.chr17            28815084 0 -  71996105 C
e cerAty1.NW_012002711v1     356918 0 +    766320 C
e macNem1.NW_012011356v1    2596288 0 -   2996164 C
e macFas5.chr4             29600137 0 - 170955103 C
e rheMac8.chr4             29936207 0 + 172585720 C
e gorGor5.CYUI01015250v1    5708692 0 +   6154872 C
e panPan2.chr6             29904512 0 + 173848474 C
e panTro5.chr6             29667622 0 + 175400573 C

a score=1129563.000000
s hg38.chr6_GL000254v2_alt   694152 271 +   4827813 aagagttggccaggcaaaagacaggaaaccagaccaggcagggcatccctggcaggaaa-gcatatgcaaaagcaaagagttgtaattgagcatgacACTTCTAAATATCTGAAAATGGCTCTGTCATACCTGCTGGAAGGTTTTCATATGCTATTCAAAGCAATATGTGTTTATTAACTGAAGACAATGAGAGAGAATACAGGGAATGATTAGAAACAGTTGAGAAAGGTAGA-GAAAAAAAGCAGATATCATATAAATAAA---TATAAATACA
s panTro5.chr6             29667622 267 + 175400573 --gagttggccaggcaaaagacaggaaaccagaccaggcagggcacccctggcaggaaa-gcatatgcaaaagca--gagttgtaattgagcatgacACTTCTAAATATCTGAAAATGGCTCTGCCATACCTGCTGGAAGGTTTTCATATGCTATTCAAAGCAATGTGTGTTTATTAACTGAAGACAATGACAGAGAATACATGGAATGATTAGAAACAGTTGAGAAAGGTAGA-GAAAAAAAGCAGATATCATATAAATAAA---TATAAATACA
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5708692 269 +   6154872 --cagttggccaggcaaaagacaggaaaccagaccaggcagggcatccctggcaggaaa-gcatatgcaaaagcaaagagTTGTAATTGAGCATGACACTTCTAAATATCTGAAAATGGCTCTGTCATACCTGCTGGAAGGTTTTCATATGCTATTCAAAGCAATGTGTGTTTATTAACTGAAGACAATGAGAGAGAATACAGGGAATGATTAGAAACAGTTGAGAAAGGTAGA-GAAAAAAAGCAGATATCATATAAATAAA---TATAAATACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29936207 272 + 172585720 aagagttggccaggcaaaagacaggaaaccagaccaggcagggcaaccctggcaggaaa-gtttatgtaaaagcaaagagTTGTAATTGAGCATGACACTTCTAAATATCTAAAAATGGCTCTGCTGCACCTGCTGGAAGTTTTTCATATGCTATTCAAAGCAATGTGTGTTTATTAACTGAAGACAATGAGAGAGAACACAGGGAATGATTAGAAACAGTTGAGAACGGTAGAGGAAAAAAAGCAGat---atataaataaatattataaataca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29600137 272 - 170955103 aagagttggccaggcaaaagacaggaaaccagaccaggcagggcaaccctggcaggaaa-gtttatgtaaaagcaaagagTTGTAATTGAGCATGACACTTCTAAATATCTAAAAATGGCTCTGCTGCACCTGCTGGAAGTTTTTCATATGCTATTCAAAGCAATGTGTGTTTATTAACTGAAGACAATGAGAGAGAACACAGGGAATGATTAGAAACAGTTGAGAACGGTAGAGGAAAAAAAGCAGat---atataaataaatattataaataca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2596288 272 -   2996164 aagagttggccaggcaaaagacaggaaaccagaccaggcagggcaaccctggcaggaaa-gtatatgtaaaagcaaagagTTGTAATTGAGCATGACACTTCTAAATATCTAAAAATGGCTCTGCTGCACCTGCTGGAAGTTTTTCATATGCTATTCAAAGCAATGCATGTTTATTAACTGAAGACAATGAGAGAGAATACAGGGAATGATTAGAAACAGTTGAGAATGGTAGAGGAAAAAAAGCAGat---atataaataaatattataaataca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     356918 272 +    766320 aagagttggccaggcaaaagacaggaaaccagaccaggcagggcaaccctggcaggaaa-gtatatgtaaaagcaaagagTTGTAATTGAGCATGACACTTCTAAATATCTAAAAATGGCTCTGCTGCACCTGCTGGAAGTTTTTCATATGCTATTCAAAGCAATGCATGTTTATTAACTGAAGACAATGAGAGAGGATACAGGGAATGATTAGAAACAGTTGAGAATGGTAGAGGGAAAAAAGCAGat---atataaataaatattataaataca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28815084 272 -  71996105 aagagttggccagacaaaagacaggaaaccagaccaggcagggcaaccctggaaggaaa-gtacatgtaaaagaaaagagTTGTAATTGAGCATGACACTTCTAAATATCTAAAAATGGCTCTGCTGCACCTGCTGGAAGTTTTTCATATGCTATTCAAAGCAATGTGTGTTTATTAACTGAAGACAGTGAGAGAGAATACAGGGAATGATTAGAAACAGTTGAGAACGGTAGAGGAAAAAAAGCAGat---atataaataaatattataaataca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     330261 271 -    352859 aagagttggccaggcaaaagacaggaaaccagaccaggcagggcaaccctggcaggaaa-gtatatgtaaaagcaaagagTTGTAATTGAGCATGACACTTCTAAATATCTAAAAATGGCTCTGCTGCACCTGCTGGAAGTTTTTCATATGCTATTCAAA-CAATGTATGTTTATTAACTGAAGACAATGAGAGAGAATACAGGGAATGATTAGAAACAGTTGAGAATGGTAGAGGAAAAAAAGCAGat---atataaataaatattataaataca
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2426048 272 -   3067355 aagagttggccaggcaaaagacaggaaaccagaccaggcagggcaaccctggcaggaaa-gtatatgtaaaagcaaagagTTGTAATTGAGCATGACACTTCTAAATATCCAAAAATGGCTCTGCTGCACCTGCTGGAAGTTTTTCATATGCTATTCAAAGCAATGCGTGTTTATTAACTGAAGACTATGAGAGAGAATACAGGGAATGATTAGAAACAGTTGAGAACGGTAGAGGAAAAAAAGCAGat---atataaataaatattataaataca
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2124302 251 -   2232465 aggagctggccaggc-aaagatagggaacta------gcaggg-aattctggcaggaaaggtatatgtgaaagcAAAGCA----AACTGGGAGTGGCACTGCTACAGTAATGAAAATGGGTCTGC-ACACCTGCAGGGAGGACTTCATATGTGATCTAAATCCATGTATTTTTTTTAACTGAATGCAAT----GAGAATATAGGGAATTATTAGGAGCAGAGGGGAATGGCAGAGAAAAAAAA--AGAT---ATTCTCATATA---TTTACATATA
i otoGar3.GL873742         C 0 C 0
e mm10.chr17               57762382 3602 -  94987271 I
e dasNov3.JH569098           194148  91 -    254539 I
e proCoq1.NW_012152574v1     451371 562 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512   0 + 173848474 C

a score=1340000.000000
s hg38.chr6_GL000254v2_alt   694423 269 +   4827813 TAATACTAACAGTGTTACTTTCTAGAATATGGGATTAATAAATATACATTATATTtattatcacaaaaaatgtaagttatctttaatacaaatagtctagaacatcagtttcctaagaggtgaaaaactggatgcctcagggaccacagtgctgggagccttcacggcacactgTTTTGTAGTTTTGCCTAAGACCAAATCTGccttttgaatggaatcccattttccatacctctgctcattgctaacgttaaatcctcgaagaccca
s panTro5.chr6             29667889 269 + 175400573 TAATATTAACAGTGTTACTTTCTAGAATATGGGATTAATAAACATATATTATATTTATTATCACAAAAAATGTAAGTTATCTTTAATACAAACAGTCTAGAACATCAGTTTCCTAAGAGGTGAAAAACTGGATGCCTCAGGGACCACGGTGCTGGGAGCCTTCACGGCACACTGTTTTGTAGTTTTGCCTAAGACCAAATCTGTCTTTTGAATGGAATCCCATTTTCCATACCTCTGCTCATTGCTAACGTTAAATCCTCAAAGACCCA
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5708961 269 +   6154872 TAATATTAACAGTGTTACTTTCTAGAATATGGGATTAATAAACATACATTATATTTATTATCACAAAAAATGTAAGTTATCTTTAATACAAACAGTCTAGAACATCAGTTTCCTAAGAGGTGAAAAACTGGATGCCTCAGGGACCACGGTGCTGGGAGCCTTCATGGCACACTGTTTTGCAGTTTTGCCTAAGACCAAATCCGccttttgaatggaatcccattttccatacctctgctcattgctaacgttaaatcctcgaagaccca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29936479 268 + 172585720 taatatTAACAGAGTTACTTTTTAGAATATAGGATTAATAAACATACATTATGTTTATTATCAT-AAAAATGTAAGTTATCTTTAACACAAACAGTCTAGAACATCAGTTGCCTAAGAGGTGAAAAACTAGATGCCTCAGGGACCACGGTGCTAGGAGCCTTCACGGCATACTGTTTTGTAGTTTTGCCTAAGATCAAATCTGTCTTTTGAAtggaatcccattttccatacctctgctcattgctaatgttaaaccctcaaagaccca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29600409 268 - 170955103 taaTATTAACAGAGTTACTTTTTAGAATATGGGATTAATAAACATACATTATGTTTATTATCAT-AAAAATGTAAGTTATCTTTAACACAAACAGTCTAGAACATCAGTTGCCTAAGAGGTGAAAAACTAGATGCCTCAGGGACCACGGTGCTAGGAGCCTTCACGGCATACTGTTTTGTAGTTTTGCCTAAGATCAAATCTGCCTTTTGAATGGAATCCCATTTTCCATACCTCTGCTCATTGCTAATGTTAAACCCTCAAAGACCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2596560 268 -   2996164 taaTATTAACGGAGTTACTTTCTAAAATATGGGATTAATAAACATACATTATGTTTATTATCAC-AAAAATGTAAGTTATCTTTAACACAAACAGTCTAGAACATCAGTTGCCTAAGAGGTGAAAAACTAGATGCCTCAGGGAGCACGGTGCTGGGAGCCTTCACGGCATACTGTTTTGTAGTTTTGCCTAAGATCAAATCTGCCTTTTGAAtggaatcccattttccatacctctgctcattgctaatgttaaaccctcaaagaccca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     357190 268 +    766320 taaTATTAACAGAGTTACTTTCTAGGATATGGGATTAATAAAGATACATTATATTTATTATCAC-AAAAATGTAAGTTATCTTTAACACAAACAGTCTAGAACATCAGTTGCCTAAGAGGTGAAAAACTAGATGCCTCAGGGAGCACGGTGCTGGGAGCCTTCACAGCATACTGTTTTGTAGTTTTGCCTAAGATCAAATCTGCCTTTTGAAtggaatcccattttccatacctctgctcattgctaatgttaaaccatcaaagaccca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28815356 268 -  71996105 taaTATTAACAGAGTTACTTTCTAGAATATGGGATTAATAAGCATACATTATATTTATTATCAC-AAAAATGTAAGTTATCTTTAACACAAACAGTCTAGAGCATGAGTTGCCTAAGAGGTGAAAAACTAGATGCCTCAGGGACCACGGTGCTGGGAGCCTTCACGGCATACTGTTTTGTAGTTTTGCCTAAGATCAAATCCGCCTTTTGAATGGAATCCCATTTTCCATACCTCTGCTCATTGCTAATGTTAAATCCTCAAAGACCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     330532 268 -    352859 taaTATTAGCAGAGTTACTTTCTAGGATATGGGATTAATAAAGATACATTATATTTATTATCAC-AAAAATGTAAGTTATCTTTAACACAAACAGTCTAGAACATCAGTTGCCTAAGAGGTGAAAAACTAGATGCCTCAGGGAGCACGGTGCTGGGAGCCTTCACAGCATACTGTTTTGTAGTTTTGCCTAAGATCAAATCTGCCTTTTGAAtggaatcccattttccatacctctgctcattgctaatgttaaaccctcaaagaccca
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2426320 268 -   3067355 taaTATTAACAGAGTTGCTTTCTAGAATATGGGATTAATAAACATACATTATATTTATTATCAC-AAAAATGTAAGTTATCTTTAACACAAACAGTCTAGAACATCAGTTGCCTAAGAGGTGAAAAACTAGATGCCTCAGGGACGATGGTGCTGGGAGCCTTCACGGCATACTGTTTTGTAATTTTGCCTAAGATCAAATCTGCCTTTTGAATGGAATCCCATTTTCCATACCTCTGTTCATTGCTAATGTTAAATCCTCAAAGATCCA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     451933 263 +    730504 TAATTCTAACAGTGTTATTTTCTAGATTGTGGAATTGATAAACATATATTACATTTATTATTATATAAAATACAAGTTTTCTTTAATACAGG----CTAGAACATCAGTTGCCAAAGACGTG-GAGACTGGCTGGCTCAGGGCCTAAGGTGGCAGGAGACTTCACTGCAGACTAAtttgtatttttgcctaaggccaaatctgccttttgcatggaatcccattttccactcccttgctcatcactactgttaaatcct-aaagaccca
i proCoq1.NW_012152574v1   I 562 C 0
s otoGar3.GL873742          2124553 259 -   2232465 TAATTATAAGAGTGTTATTTTCTAGATTATGGGACTGATAAATGTG--------TTATTATTATATAAAATACAAGTTTTCTTTAATATAGACACCCTATAACATCAGTTGCCAAAGACATGAAAAACTGGATGGTTCAGAATCAAAGGTGA-AGGAGACTACACT-CATATTATTTTGTACTTTTGTCTACAACCAAATCTGCCTTTTGTAAAGAATCCCATTTTCTACTCCCTTGCTCATTACTACTGTCAAATCCTCAAAGACCCA
i otoGar3.GL873742         C 0 I 1003
e mm10.chr17               57762382 3602 -  94987271 I
e dasNov3.JH569098           194148  91 -    254539 I
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512   0 + 173848474 C

a score=2017469.000000
s hg38.chr6_GL000254v2_alt   694692 460 +   4827813 gcttaagaacttatctctaccaagaatcccccttgacTAATAGAGCCCTTTATTTCTCTCCcaatcatgtactaaggatctagtgtatagaagatattacatctgtttctgaggatagtgggccaaacaaaactggtccatactcttaaggagtttacactcttgtgtgacagatggacatatcaacagaaaattgcaatacgccaaaagacagttaatgaattcaacctgaaagaaatagtactaggaggaagtgatgctg-aactgatgagtgattgcagtggaaaatggaaagaatggaggtgagggcattttaggtaaaagg-aaaaccatgagtacacactgaggcaagaaacaacATTGGATGTGAGGAGGAGAAAGAGGTAGCAGGGGGTAAGTAGCCAAGGGTAGCTCAAACAATCCCCTCGATTctgaaggagaattaggattgaggtgaaga
s panTro5.chr6             29668158 460 + 175400573 GCTTAAGAACTTATCTCTACCAAGAATCCCCCTTGACTAATAGAGCCCTTTATTTCTCTCCcaatcatgtactaaggatctggtgtatagaagatattacatctgtttctgaggatagtgggccaaacaaaactggtccatactcttaaggagcttacactcttgtgtgacagatggacatatcaacagaaaattgcaatacgccaaaagacagttaatgaattcaacctgaaagaaatagtactaggaggaagtgatGCTG-AACTGATGAGTGATTGCAGTGGAAAATGGAAAGAATGGAGGTGAGGGCATTTTAGGTAAAAGG-AAAACCATGAGTACACACTGAGGCAAGAAACAACATTGGATGTGAGGAGGAGAAATAGGTAGCAGGGGGTAAGTAGCCAAGGGTAGCTCAAACAATCCCCTCGATTctgaaggagaattaggattggggtgaaga
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5709230 460 +   6154872 gcttaagaacttatctctaccaagaatcccccttgacTGATAGAGCCCTTTATTTCTCTCCcaatcatgtactaaggatctggtgtatagaagatattacatctgtttctgaggatagtgggccaaacaaaactggtccatactcttaaggagcttacactcttgtgtgacagatggtcatatcaacagaaaattgcaatacgccaaaagacagttaatgaattcaacctgaaagaaatagtactaggaggaagtgatgctg-agctgatgagtgattgcagtgggaaatggaaagaatggaggtgagggcattttagataaaagg-aaaaccatgagtacacactgaggcaagaaacaacattggatgtgaggaggagaaagaggtagcagggggtaagtagccaagggtagCTCAAACAATCCCCTCGATTctgaaggagaattaggattggggtgaaga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29936747 456 + 172585720 gcttaag-actcatctctaccaagaatcccgcttgactaatggagccctttatttctctcCCAATCACGTACTAAGGATCTGGTGTTCAGAAAATATTACATCTGTTTctgagtatagcgggccaaacaaaactgattcatagtcttaaggagcttacactcttgtgtggcagatggacatatcaatagaaaattgcaatataccaaaagagcgttaatgagttcaacctgaaagaaatagtactgggaggaaatgatgctg-aactgcccagtgattgaagtggaaaatggaaagaatggaggtgagggcatttcaggtaaaagg-aaaaccatgagtacacactgaggcaagaaacaacattggctgtgaggaggggaaagaggtagcagggggtaagtagccaagggtagCTCAAAAAATCCCCTCGATTCTGAAGGAGCATTAGGATTGGGGT---GA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29600677 456 - 170955103 GCTTAAG-ACTCATCTCTACCAAGAATCCCGCTTGACTAATGGAGCCCTTTATTTCTCTCCCAATCACGTACTAAGGATCTGGTGTTCAGAAAATATTACATCTGTTTctgagtatagcgggccaaacaaaactgattcatagtcttaaggagcttacactcttgtgtggcagatggacatatcaatagaaaattgcaatataCCAAAAGAGCGTTAATGAATTCAACCTGAAAGAAATAGTACTGGGAGGAAATGATGCTG-AACTGCCCAGTGATTGAAGTGGAAAATGGAAAGAATGGAGGTGAGGGCATTTCAGGTAAAAGG-AAAACCATGAGTACACACTGAGGCAAGAAACAACATTGGCTGTGAGGAGGGGAAAGAGGTAGCAGGGGGTAAGTAGCCAAGGGTAGCTCAAAAAATCCCCTCGATTCTGAAGGAGCATTAGGATTGGGGT---GA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2596828 459 -   2996164 gcttaag-actcatctctaccaagaatcccccttgactaatggagccctttatttctctcCcaatcatgtactaaggatctggtgttcagaagatattacatctgtttctgaggatagcgggccaaacaaaactgattcatagtcttaaggagcttacactcttgtgtggcagatggacatatcaacagaaaattgcaatataCCAAAAGAGCGTTAATGAATTCAACCTGAAAGAAATAGTACTGGGAGGAAATGATGCTG-AACTGCCCAGTGATTGAAGTGGAAAATGGAAAGAATGGAGGTGAGGGCATTTCAGGTAAAAGG-AAAACCATGAGTACACACTGAGGCAAGAAACAACATTGGCTGTGAGGAGGGGAAAGAGGTAGCAGGGGGTAAGTAGCCAAGGGTAGCTAAAAAAATCCCCTCGATTCTGAAGGAGCATTAGGATTGGGGTGAAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     357458 460 +    766320 gcttaag-actcatctctaccaagaatcccccttgactaatggagcccTTTATTTCGCTCCcaatcatgtactaaggatctggtgttcagaagatattacatctgtttctgaggaaagtgggccaaacaaaactggttcatactcttaaggagcttacactgttgtgtgacagatggacatatcaacagaaaattgcaatgcaccaaaagagtgttaataaattcaacctgaaagaaatagtactgggaggaaatgatgctg-aactgaccagtgattgaagtggaaaatggaaagaatggaggtgagggaatttcaggtaaaaggaaaaaccatgagcacacactgaggcaagaaataacattggctatgaggaggagaaagaggtagtagggggtaagtagccaagggtagCTCAAAAAATCCCCTCGATTCTGAAGGAGCATTAGGATTGGGGTGAAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28815624 459 -  71996105 GCTTAAG-ACTCATCTCTACCAAGAATCCCCCTTGACTAATGGAGCCCTTTATTTCTCTCCcaatcatgtactaaggatctggtgttcagaagatattacatctgtttctgaggatagtgggccaaacaaaactggttcatactcttaaggagcttacactgttgtgtgacagatggacatatcaacagaaaattgcaatataCCAAAAGAGCGTTAATGAATTCAACCTGATAGAAATAGTGCTGGGAGGAAATGATGCTGAAACTGACTAGTGATTGAAGCGGAAAATGGAAATAATGGAGGTGAGGGCATTTCAGGTAAAAGG-AAAACCATGAGTATACACTGAGGCAAGAAATAACATTGGCTGTGAGGAGGAGAAAGAGGTAGCAGGGGGTAAGT-GCCAAGGGTAGCTCAAAAAATCCCCTCGATTCTGAAGGAGCATTAGGATTGGGGTGAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     330800 459 -    352859 gcttaag-actcatctctaccaagaatcccccttgactaatggagtcctttatttctctcCcaatcatgtactaaggatctggtgttcagaagatattacatctgtttctgaggaaagtgggccaaacaaaactggttcatactcttaaggagcttacactgttgtgtgacagatggacatatcaacagaaaattgcaacacaccaaaagagcgttaatgaattcaacctgaaagaaatagtactgggaggaaatgatgctg-aactgaccagtgattgaagtggaaaatggaaagaatggaggtgagggaatttcaggtaaaagg-aaaaccatgagcacacactgaggcaagaaataacattggctatgaggaggagaaagaggtagcagggggtaagtagccaagggtagCTCAAAAAATCCCCTCAATTCTGAAggagcattaggattggggtgaaga
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2426588 459 -   3067355 GCTTAAG-ACTCATCTCTACCAAGAATCCCCCTTCACTAATGGAGCCCTTTATTTCTCTCCcaatcatgtactaagtatctggtgttcagaagatattacatctgtttctgaggatagtgagccaaacaaaactgattcacactcttaaggagcttatactcttatgtggcagatggacatatcaacagaaaattgcaatacaCCAAAAGAGCGTTAATGAATTCAACCTGAAAGAAATAGTACTGGGAGGAAATGATGGTG-AACTGCCCGGTGATTGAAGTGGAAAATGGAAAGAATGGAAGTGAGGGCATTTCAGGTAAAAGG-AAAACCATGAGTACACACTGAGGAAAGAAACAACATTGACTGTGAGGAGGAGAAAGAGGTAGCAGGGTGTAAGTAGCCAAGGCTAGCTCAAAAAATCCCCTCGATTCTGAAGGAGCATTAGGATTGGGGTGAAGA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     452196 454 +    730504 gcttagg-tttcatctcccccatgaagcctccgtgactaatggagctctttatttcttgagcaatcatgtgc-aaggatcttgtgtatagaagacattacttgagttgctgagggcactaggtgaaataacaccagtccatgcccttaaggagcttacgatcttatgtagtaggtgggcacatcaacagacaacggcaatacactgaaagggagttaatgaattcaacctgaaagatgcagtactgcgaggaagcattgctg-aactgactagcaattgccatggagaatgaaaagaatggaggtgagggcatttcaggtgaaagg-aaaaccacgagtagatactgaggcaagaaacagcatagaatgtgaggagga-aaggaaatagcagggggcaagtagccaagagtagctaaaagaa---actcagttctgcaggagcattaggattgaggtgaaca
i proCoq1.NW_012152574v1   C 0 C 0
e mm10.chr17               57762382 3602 -  94987271 I
e dasNov3.JH569098           194148  91 -    254539 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2124812 1003 -   2232465 I
e panPan2.chr6             29904512   0 + 173848474 C

a score=82061.000000
s hg38.chr6_GL000254v2_alt   695152 25 +   4827813 atgggggaaga----cagggagagaaagg
s panTro5.chr6             29668618 25 + 175400573 atgggggaaga----cagggagagaaagg
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5709690 25 +   6154872 ataggggaaga----cagggagagaaagg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29937203 22 + 172585720 ATGGGGAAAGA----TATGGAGAGAA---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29601133 22 - 170955103 ATGGGGAAAGA----TATGGAGAGAA---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2597287 22 -   2996164 ATGGGGAAAGA----TATGGAGAGAA---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     357918 25 +    766320 ATGGGGGAAGA----TATGGAGAGAAAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28816083 22 -  71996105 ATGGGGGAAGA----TATGGAGAGAA---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     331259 25 -    352859 atgggggaaga----tatggagagaaagg
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2427047 22 -   3067355 ATGGGGGAAGA----TATGGAGAGAA---
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     452650 25 +    730504 atgaaggaagacggtcatagagagg----
i proCoq1.NW_012152574v1   C 0 I 51
s dasNov3.JH569098           194239 25 -    254539 Atagtggaaga----gaaggctataaagg
i dasNov3.JH569098         I 91 C 0
e mm10.chr17               57762382 3602 -  94987271 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2124812 1003 -   2232465 I
e panPan2.chr6             29904512  0 + 173848474 C

a score=163240.000000
s hg38.chr6_GL000254v2_alt   695177 44 +   4827813 --ggccaggatcagagtctggggacccttgcttgtcacaagaagga
s panTro5.chr6             29668643 44 + 175400573 --ggccaggatcagagtctggggacccttgcttgtcacaagaagga
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5709715 44 +   6154872 --ggccaggatcagagtctggggacccttgcttgtcacaagaagga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29937225 39 + 172585720 ------AGGATCAGAGTCTGGGGA-CCTTGCTTGTCACAAGAAGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29601155 39 - 170955103 ------AGGATCAGAGTCTGGGGA-CCTTGCTTGTCACAAGAAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2597309 39 -   2996164 ------AGGATCAGAGTCTGGGGA-CCTTGCTTGTCACAAGAAGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     357943 43 +    766320 --GGCCAGGATCAGAGTCTGGGGA-CCTTGCTTGTCACAAGAAGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28816105 39 -  71996105 ------AGGATCAGAGTCTGGGGA-CCTTGCTTGTCACAAGAAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     331284 43 -    352859 --ggccaggatcagagtctgggga-ccttgcttgtcacaagaagga
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2427069 39 -   3067355 ------AGGATCAGAGTCTGGGGA-CCTTGCTTGTCACAAGAAGGA
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH569098           194264 45 -    254539 tgaaccaggatca-agcatggagagcctttcatatcatgagaaggt
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57762382 3602 -  94987271 I
e proCoq1.NW_012152574v1     452675 51 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2124812 1003 -   2232465 I
e panPan2.chr6             29904512  0 + 173848474 C

a score=307303.000000
s hg38.chr6_GL000254v2_alt   695221 58 +   4827813 actagagcttcattctataggcagcaaggcacagctgaaggcttttaaacagtacagt
s panTro5.chr6             29668687 58 + 175400573 actagagcttcattctataggcagcaaggcacagctgaaggcttttaaacagtacagt
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5709759 58 +   6154872 actagagcttcattctataggcagcaaggcacagctgaaggcttttaaacagtacagt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29937264 58 + 172585720 ACTAGAGCTTCATTCTATAGGCAGCAAGGCACATCTGAAGGCTTTTAAACAATAAGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29601194 58 - 170955103 ACTAGAGCTTCATTCTATAGGCAGCAAGGCACATCTGAAGGCTTTTAAACAATAAGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2597348 58 -   2996164 ACTAGAGCTTCATTCTATAGGCAGCAAGGCACATCTGAAGGCTTTTAAACAATAAGGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     357986 58 +    766320 ACTAGAGCTTCATTCTATAGACAGCAAGGCACATCTGAAGGCTTTTAAACAATAAGGT
i cerAty1.NW_012002711v1   C 0 I 291
s chlSab2.chr17            28816144 58 -  71996105 ACTAGAGCTTCATTCTATAGGCAGCAAGGCACATCTGAAGGCTTTTAAACAATAAGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     331327 58 -    352859 actagagcttcattctataggcagcaaggcccatctgaaggcttttaaacaataaggt
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2427108 58 -   3067355 ACTAGAGCTTCATTCTATAGGCAGCAAGGCACATCTGAAGGCTTTTAAACAATAAGGT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     452726 58 +    730504 gctagagctttatcctgtaggcagcagggcacacctgacggcttttaaacaatagggt
i proCoq1.NW_012152574v1   I 51 C 0
s dasNov3.JH569098           194309 58 -    254539 gccatacctttatcttgtaggcaacaaggcaaacctagaggcttttaaacagtagggc
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57762382 3602 -  94987271 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2124812 1003 -   2232465 I
e panPan2.chr6             29904512  0 + 173848474 C

a score=959057.000000
s hg38.chr6_GL000254v2_alt   695279 200 +   4827813 ggcatgtttcaacctaaatttaaatagtattatggaagctacatccaaggtaacaagagtgaaagaagggaTGGCCCCACTCATCTGATACCTGATGTGCAAATACATGCTGCCTTGAGTTCATCATTAATTATCTTATGGTATGCACTTTCTCTTTTCCAAAAGACTAAAAGTTCATTTAGCACAGGATTTAAATTTTT
s panTro5.chr6             29668745 200 + 175400573 ggcatgtttcaacctaaatttaaatagtattatggaagctagatccaaggtaacaagagtgaaagaagggaTGGCCCCACTCATCTGATACCTGATGTGCAAATCCATGCTGCCTTGAGTTCATCATTAATTATCTTATGGTATGCACTTTCTCTTTTCCAAAAGACTAAAAGTTCATTTAGCACAGGATTTAAATTTTT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5709817 200 +   6154872 ggcatgtttcaacctaaatttaaatagtattatggaagctagatccaaggtaacaagagtgaaagaagggaTGGCCCCACTCATCTGATACCTGATGTGCAAATACATGCTGCCTTGAGTTGATCATTAATTATCTTATGGTATGCACTTTCTCTTTTCCAAAAGACTAAAAGTTCATTTAGCACAGGATTTAAATTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29937322 200 + 172585720 GGTATGTTTCAAGCTAAATTTAAATAGTATTATATAAGCTAGATCCAAGGTAACAAGAGTGAAAGAAGGGATGGCCCCACCCATCTGATACCTGATGTGGAAATACATGCTGCCTTGAATTGATCATCAATTATCTTATAGTATGCACTTTCTCTTTCCCAAAAGACTAAAAGTTCATTTAGCACAGGATTTAAATTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29601252 200 - 170955103 GGTATGTTTCAAGCTAAATTTAAATAGTATTATATAAGCTAGATCCAAGGTAACAAGAGTGAAAGAAGGGATGGCCCCACCCATCTGATACCTGATGTGGAAATACATGCTGCCTTGAATTGATCATCAATTATCTTATAGTATGCACTTTCTCTTTCCCAAAAGACTAAAAGTTCATTTAGCACAGGATTTAAATTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2597406 200 -   2996164 GGTATGTTTCAAGCTAAATTTAAATAGTATTATATAAGCTAGATCCAAGGTAACAAGAGTGAAAGAAAGGATGGCCCCACCCATCTGATACCTGATGTGGAAATACATGCTGCCTTGAATTGATCATCAATTATCTTATAGTATGCACTTTCTCTTTCCCAAAAGACTAAAAGTTCATTTAGCACAGGATTTAAATTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     358335 200 +    766320 GGCATGTTTCAACCTAAATTTAAATAGTATTATAGAAGTTATATCCAAGGTAACAAGAGTGAAAGAAGGAATGGCCCCACCCATCTGATACTCGATGTGCAAATACATGCTACCTTGAATTGATCATCAATTATCTTATGGTATGCACTTTCTCTTTCCCAAAAGACTAAAAGTTCATTTAGCACAGGATTTAAATTTTT
i cerAty1.NW_012002711v1   I 291 C 0
s chlSab2.chr17            28816202 200 -  71996105 GATATGTTTCAACCTAAACTTAAATAGTATTATAGAAGCTAGATCCAAGGTAACAAGAGTAAAAGAAGGGATGGCCCCACCTATCTGATACCTGATGTGCAAATACATGCTGCCTTGAATTGATCATTAATTATCTTATGGTATGCACTTTCTCTTTCCCAAAAGACTAAAAGTTAGTTTAGCACAGGATTTAAATTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     331385 200 -    352859 ggcatgttttaacctaaatttaaatagtattatagaagttatatccaaggtaacaagagtgaaagaaggaaTGGCCCCACCCATCTGATACTCGATGTGCaaatacatgctgccttgaattgatcatcaattatcttatggtatgcactttctctttcccaaaagactaaaagttcatttagcacaggATTTAAATTTTT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2427166 200 -   3067355 GGTATGTTTCAAGCTAAATTTAAATAGTATTATAGAAGCTAGATCCAAGGTAACAAGAGTGAAAGAAGGGATGGCCCCACCCATCTGATACCTGATGTGCAAATACATGCTGCCTTGAATTGATCATCAATTATCTTATGGTATGCACTTTCTCTTTCCCAAAAGACTAAAAGTTCATTTAGCACAGGATTTAAATTTTT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     452784 190 +    730504 ggcatgatccaacctaaatttagatagtattatggaggcttgatccaaggtaacaagaatgaaagaagggaTGGCCCCAC----------CCTGATGAGCAAATGCATGCTGCCCTGAACTGATGGTTCATTATTTTACTGTGTGAATTTTCCTTTTCCCAGAACACTACAAGTTCATTTAGCACAGGAACTAAATTTTT
i proCoq1.NW_012152574v1   C 0 I 25
s dasNov3.JH569098           194367 134 -    254539 agcctggtctaacctgcatttagataataatgtgtaaactagacccaaggtaacaagagctgaag-----------------------------------------------cCTTGGATT-------------------GTATGCACTTTCTCCTCCCCAAAAGAATGCAAGCTCATTTAACACAGGGACTAAATATTT
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57762382 3602 -  94987271 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2124812 1003 -   2232465 I
e panPan2.chr6             29904512   0 + 173848474 C

a score=86221.000000
s hg38.chr6_GL000254v2_alt   695479 23 +   4827813 ATAAGTGCTACTGTACC----GAAGTC
s panTro5.chr6             29668945 23 + 175400573 ATAACTGCTACTGTACC----GAAGTC
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5710017 23 +   6154872 ATAACTGCTACTGTACC----GAAGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29937522 25 + 172585720 GTAACTGCTACTGTACCCA--AAAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29601452 25 - 170955103 GTAACTGCTACTGTACCCA--AAAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2597606 25 -   2996164 ATAACTGCTACTGTACCCA--AAAGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     358535 25 +    766320 ATAACTGCCACTGTACCCA--AAAGTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28816402 25 -  71996105 ATAACTGCTACTGTACCCA--AAAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     331585 25 -    352859 ATAACTGCCACTGTACCCA--AAAGTC
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2427366 25 -   3067355 ATAACTGCTACTGTACCCA--AAAGTC
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH569098           194501 27 -    254539 ATATACATTACAACACCCAACAAACTC
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57762382 3602 -  94987271 I
e proCoq1.NW_012152574v1     452974 25 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2124812 1003 -   2232465 I
e panPan2.chr6             29904512  0 + 173848474 C

a score=1871316.000000
s hg38.chr6_GL000254v2_alt   695502 378 +   4827813 TTAC-AAAAAGATATATTCTCAATGAATACTTAATGTTTAACACCATGTCTTCCTTAACCTAAACCCATATGAATTGATCAGAGAAGAATGCTGTTCTTCATAGACTACAAAATTCCACAGGTTCTGTTATTGCCCTCCAACTCCCGTCTCTAA--------AGCTATTCTCTTACCCTTTGATCCCATCTGCATTTCCTTGTGA-GTGAATCTGGCACTCCCTATGTGGGCCATCTTTAACT-CTAGATTATTttatctggtccaaactcattctgaggcttggagtctttctataggattcctg-ccaggagagagg-tgagcatgtaaatcaggcaagaatacctctaataataaatagctcatgaccactacctcccCTGGAAATCA
s panTro5.chr6             29668968 370 + 175400573 TTAC-AAAAAGATAAAATCTCAATGAATACTTAATGCTTAACACCATGTCTTCCTTAACCTAAACCCATATGAATTGATCAGAGAAGAATTCTGTTCTTCATAGGCTACAAAATTCCATAGGTT--------GCCCTCCAACTCCTGTCTCTAA--------AGCTATTCTCTTACCCTTTGATCCCATCTGCATTTCCTTGTGA-GTGAATCTGGCACTCCCTATGTGGGCCATCTTTAACT-CTAGATTATTttatctggtccaaactcattctgaggcttggagtctttctataggattcctg-ccaggagagagg-tgagcatgtaaatcaggcaagaatacctctaataataaatagctcatgaccactacctcccCTGGAAATCA
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5710040 378 +   6154872 TTAC-AAAAAGATAAAATCTCAGTGAATACTTAATGTTTAACACCATGTCTTCCTTAACCTAAACCCATATGAATTGATCAGAGAAGAATTCTGTTCTTCATAGACTACAAAATTCCACAGGTTCTGTTATTGCCCTCCAACTCCTGTCTCTAA--------AGCTATTCTCTTACCCTTTGATCCCATCTGCATTTCCTTGTGA-GTGAATCTGGCACTCCCTATGTGGGCCATCTTTAACT-CTAGATTATTttatctggtccaaactcattctgaggcttggagtctttctataggattcctg-ccaggagagagg-tgagcatgtaaatcaggcaagaatacctctaataataaatagctcatgaccactacctcccCTGGAAATCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29937547 379 + 172585720 TTAC-AAAAAGATAAAAACTCAATTAATACTTAATGTTTAACACCATGTCTTCCTTAACCTAAACCCATATGAATTGATCAGAGAAGAATTCTGTTCTTCATAGACTACAAAATGCCACAGGTTCTGTTATTGCCCTCCAACTCCTGTCTCTAA--------AGCTATTCTCTTACCCTTTGCACCCATCTGCATTTCCTTGTGA-GTGAATTTGGCACTCCCTATGTGGGCCATCTTTAACT-CTAGTTTATTttatctggtccaaactcaatctgaggcttggagtctttctatagcattcctgcccaggagagaag-tgagcaagtaaatcaggcaagaacacctctaataataaatagcttatgaccactacctcccctggaaatca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29601477 379 - 170955103 TTAC-AAAAAGATAAAAACTCAATTAATACTTAATGTTTAACACCATGTCTTCCTTAACCTAAACCCATATGAATTGATCAGAGAAGAATTCTGTTCTTCATAGACTACAAAATGCCACAGGTTCTGTTATTGCCCTCCAACTCCTGTCTCTAA--------AGCTATTCTCTTACCCTTTGCACCCATCTGCATTTCCTTGTGA-GTGAATTTGGCACTCCCTATGTGGGCCATCTTTAACT-CTAGTTTATTttatctggtccaaactcaatctgaggcttggagtctttctatagcattcctgcccaggagagaag-tgagcaagtaaatcaggcaagaacacctctaataataaatagcttatgaccactacctcccctggaaatca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2597631 379 -   2996164 TTAC-AAAAAGATAAAATCTCAATTAATACTTAATGTTTAACACCATGTCTTCCTTAACCTAAACCCATATGAATTGATCAGAGAAGAATTCTGTTCTTCATAGACTACAAAATGCCACAGGTTCTGTTATTGCCCTCCAACTCCTGTCTCTAA--------AGCTATTCTCTTACCCTTTGCACCCATCTGCATTTCCTTGTGA-GTGAATTTGGCACTCCCTATGTGGGCCATCTTTAACT-CTAGATTATTttatctggtccaaactcaatctgaggcttggagtctttctatagcattcctgcccaggagagaag-tgagcatgtaaatcaggcaagaacacctctaataataaatagcttatgaccactacctcccctggaaatca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     358560 379 +    766320 TTAC-AAAAAGATAAAATCTCAATTAATACTTAATGTTTAACACCATGTCTTCCTTAACCTGAACCCATATGAATTGATCAGAGAAGAATTCTGTTCTTCATAGACTACAAAATGCTACAGGTTCTGTTATTGCCCTCCAACTCCTGTCTCTAA--------AGCTATTGTCTTACCCTTTGCACCCATCTGCATTTCCTTGTGA-GTGAATTTGGCACTCCCTACGTGGGCCATCTTTAACT-CTAGATTATTttatctggtccaaactcaatctgaggcttggagtctttctatagcattcctgtccaggagagaag-tgagcatgtaaatcaggcaagaacacctctaataataaatagcttatgaccactacctcccctggaaatca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28816427 379 -  71996105 TTAC-AAAAAGATAAAATCTCAATTAATACTTAATGTTTAACACCATGTCTTCCTTAACCTAAACCCATATGAATTGATCAGAGAAGAATTCTGTTCTTCATAGACTACAAAATGCCACAGGTTCTGTTACTGCCCTCCAACTCCTGTCTCTAA--------AGCTATTCTCTTACCCTTTGCACCCATCTGCATTTCCTTGTGA-GTGAATTTGGCACTCCCTATGTGGGCCATCTTTAACT-CTAGATTATTttatctggtccaaactcaatctgaggcttggagtctttctatagcattcctgcccaggagagaag-tgagcatgtaaatcaggcaagaacacctctaataataaatagcttatgaccactacctcctctggaaatca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     331610 378 -    352859 TT-C-AGAAAGATAAAATCTCAATTAATACTTAATGTTTAACACCATGTCTTCCTTAACCTGAACCCATATGAATTGATCAGAGAAGAATTCTGTTCTTCATAGACTACAAAATGCTACAGGTTCTGTTATTGCCCTCCAACTCCTGTCTCTAA--------AGCTATTCTCTTACCCTTTGCAGCCATCTGCATTTCCTTGTGA-GTGAATTTGGCACTCCCTATGTGGGCCATCTTTAACT-CTAGATTATTttatctggtccaaactcaatctgaggcttggagtctttctatagcattcctgtccaggagagaag-tgagcatgtaaatcaggcaagaacacctctaataataaatagcttatgaccactacctcccctggaaatca
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2427391 379 -   3067355 TTAC-AAAAAGATAAAATCTCAATTAATACTTAGTGTTTAACACCGTGTCTTCCTTAACCTAAACCCATATGAATTGATCAGAGAAGAATTCTGTTCTTCATAGACTACAAAATGCTACAGGTTCTGTTATTGCCCTCCAACTCCTGTCTCTAA--------AGCTATTCTCTTACCCTTTGCACCCATCTGCATTTCCTTGTGA-GTGAATTTGGCACTCCCTATGTGGGCCATCTTTAACT-CTAGATTATTttatctggtccaaactcaatctgaggcttggagtctttccatagcattcctgcccaggagagaag-tgagcatgttaatcaggcaagaacatctctaataataaatagcttatgaccactacctcccctggaaatca
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     452999 387 +    730504 TTAC-AAAAAGATGAAGTCTCAATAAATACCTGATGTGTAAAACCATCTCTTCCCTAACTTAAACCCACGTGGACTGATCAGAGAAGGGTCCTGTACTTCACAGATCATAAAATCCCACAGCTTCTGTTACCATCCTCCAACTCCTGCCTCTAGAAGATATTAAATATTTCCTTGTCCTCTGCTCCCATTTGCATTTCCTGGTGACATGAATTTGACATTCCCTCTGTGGACCTCCCTTAACTCCTAGATTATTttatctggtccaagcccaatctgaggcttagattctttctatggcatttctgcccaggagagagg-tgagcatgcaaatcaggctaga--acctccagtaataaatagctcactgctaccacctccccaggaaatca
i proCoq1.NW_012152574v1   I 25 I 1032
s dasNov3.JH569098           194528 364 -    254539 CTACAAAAAAGATGAAGTCTTAAATAATACCTAACGCTTAAAACCTCCTGTCCCCTAACACAAGACTATGTGGAATGATCAGAGATG--TCCTCTGCTTTGTGGACCTAGAAATCCAACTGGTTCTTTCACCAACCTCCAAAGCCTACCTCTAAA-------AGTTGTTTCCTTA--CTCTGCCCTAATCTGCACTTCTTTGTGA--------CAAGACCCTTTCTGTGGACCTCGTTTAAAT-CTAGACTATTTGATCTAGCCCAA------CATGAGCCTTggattctttctacaacatccttgccaagtaggaaagctaggaacgcaaaccaggctagaatgccctgaggaataaacagctcaccacctct-cctccccaggcgatta
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57762382 3602 -  94987271 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2124812 1003 -   2232465 I
e panPan2.chr6             29904512   0 + 173848474 C

a score=5005.000000
s hg38.chr6_GL000254v2_alt   695880 1 +   4827813 A
s panTro5.chr6             29669338 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5710418 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29937926 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29601856 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2598010 1 -   2996164 a
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     358939 1 +    766320 a
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28816806 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     331988 1 -    352859 a
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2427770 1 -   3067355 a
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH569098           194892 1 -    254539 a
i dasNov3.JH569098         C 0 I 741
e mm10.chr17               57762382 3602 -  94987271 I
e proCoq1.NW_012152574v1     453386 1032 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2124812 1003 -   2232465 I
e panPan2.chr6             29904512 0 + 173848474 C

a score=34470.000000
s hg38.chr6_GL000254v2_alt   695881 9 +   4827813 GAGTATCAT
s panTro5.chr6             29669339 9 + 175400573 GAGTATCAT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5710419 9 +   6154872 GACTATCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29937927 9 + 172585720 gactatcat
i rheMac8.chr4             C 0 I 1716
s macFas5.chr4             29601857 9 - 170955103 gactatcat
i macFas5.chr4             C 0 I 1716
s macNem1.NW_012011356v1    2598011 9 -   2996164 gactatcat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     358940 9 +    766320 gactatcat
i cerAty1.NW_012002711v1   C 0 I 1712
s chlSab2.chr17            28816807 9 -  71996105 gactatcat
i chlSab2.chr17            C 0 I 1706
s manLeu1.NW_012099655v1     331989 9 -    352859 gactatcat
i manLeu1.NW_012099655v1   C 0 I 1714
s colAng1.NW_012115566v1    2427771 9 -   3067355 gactatcat
i colAng1.NW_012115566v1   C 0 I 1752
e mm10.chr17               57762382 3602 -  94987271 I
e dasNov3.JH569098           194893 741 -    254539 I
e proCoq1.NW_012152574v1     453386 1032 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2124812 1003 -   2232465 I
e panPan2.chr6             29904512 0 + 173848474 C

a score=17190.000000
s hg38.chr6_GL000254v2_alt   695890 4 +   4827813 tgga
s panTro5.chr6             29669348 4 + 175400573 tgga
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5710428 4 +   6154872 tgga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29939652 4 + 172585720 tgga
i rheMac8.chr4             I 1716 C 0
s macFas5.chr4             29603582 4 - 170955103 tgga
i macFas5.chr4             I 1716 C 0
s macNem1.NW_012011356v1    2598020 4 -   2996164 tgga
i macNem1.NW_012011356v1   C 0 I 4143
s cerAty1.NW_012002711v1     360661 4 +    766320 tgga
i cerAty1.NW_012002711v1   I 1712 C 0
s chlSab2.chr17            28818522 4 -  71996105 tgga
i chlSab2.chr17            I 1706 C 0
s manLeu1.NW_012099655v1     333712 4 -    352859 tgga
i manLeu1.NW_012099655v1   I 1714 C 0
s colAng1.NW_012115566v1    2429532 4 -   3067355 tgga
i colAng1.NW_012115566v1   I 1752 C 0
e mm10.chr17               57762382 3602 -  94987271 I
e dasNov3.JH569098           194893 741 -    254539 I
e proCoq1.NW_012152574v1     453386 1032 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2124812 1003 -   2232465 I
e panPan2.chr6             29904512 0 + 173848474 C

a score=211144.000000
s hg38.chr6_GL000254v2_alt   695894 65 +   4827813 gctggaggctattattttaagtgaaatatctcagaaacagaaagtcaaatattgcatattctcat
s panTro5.chr6             29669352 65 + 175400573 gctggaggctattattttaagtgaaatatctcagaaacagaaagtcaaatattgcatattctcat
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5710432 65 +   6154872 gctggaggctattattttaagtgaaatatctcagaaacagaaagtcaaatattgcatattctcat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29939656 65 + 172585720 gctagaggctattattttaagtgaaatatcttagaaacagaaagtcaaatattgcatattctcac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29603586 65 - 170955103 gctagaggctattattttaagtgaaatatcttagaaacagaaagtcaaatattgcatattctcac
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     360665 65 +    766320 gctagaggctattattttaagtgaaatatcttagaaacagaaagtcaaatattgcatattctcac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28818526 65 -  71996105 gctggaggctattattttaagtgaaatatcttagaaacagaaagtcaaatattgcatattctcac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     333716 65 -    352859 gctagaggctattattttaagtgaaatatcttagaaacagaaagtcaaatattgcatattctcac
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2429536 65 -   3067355 gctggaggttattattttaagtgaaatatcttagaaacagaaagtcaaatattgcatattctcac
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57762382 3602 -  94987271 I
e dasNov3.JH569098           194893 741 -    254539 I
e proCoq1.NW_012152574v1     453386 1032 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2124812 1003 -   2232465 I
e macNem1.NW_012011356v1    2598024 4143 -   2996164 I
e panPan2.chr6             29904512  0 + 173848474 C

a score=842808.000000
s hg38.chr6_GL000254v2_alt   695959 210 +   4827813 ttataagtgggagctaaataatgtgtgcacatgaacacagaattcagaataatagacattggagacttggaaaggtgaggtgggaaggggtgagggatgagaaattacctaatgggtataatgcacactatctgtgtgatggttacactaaaagcccagactcaatcgctacacaatatattcatgtaacaaaactgcacttgtacccct
s panTro5.chr6             29669417 210 + 175400573 ttataagtgggagctaaataatgtgtgcacatgaacacagaattcagaataatagacattggagacttggaaaggtgaggtgggaaggggtgagggatgagaaattacctaatgggtataatgcacactatctgtgtgatggttacactaaaagcccagactcaatcgctacacaatatattcatataacaaaactgcacttgtacccct
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5710497 210 +   6154872 ttataagtggaagctaaataatgtgtgcacatgaacacagaattcagaataatagacattggagacttggaaaggtgaggtgggaaggggtgagggatgagaaattacctaatgggtataatgcacactatctgtgtgatggttacactaaaagcccagactcaatcgctacgcaatatattcatgtaacaaaactgcacttgtacccct
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29939721 210 + 172585720 ttataagtgggagctaaataatgtgtgcacatgaacacagaattcagaataatagacattggagacttggaaaagtgaggtgggaagcggtgagggatgagaaattacctaatgagtataatacacactatctgggtgatggttacactaaaagcccagacttaaccactacacaatatattcatgtaacaaaactgcacttgtacccct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29603651 210 - 170955103 ttataagtgggagctaaataatgtgtgcacatgaacacagaattcagaataatagacattggagacttggaaaagtgaggtgggaagcggtgagggatgagaaattacctaatgagtataatacacactatctgggtgatggttacactaaaagcccagacttaaccactacacaatatattcatgtaacaaaactgcacttgtacccct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2602167 210 -   2996164 ttataagtgggagctaaataatgtgtgcacatgaacacagaattcagaataatagacattggagacttggaaaggtgaggtgggaaggggtgagggatgagaaattacctaatgggtataatacacattatctgggtgatggttacactaaaagcccagacttaaccactacacaatataatcttgtaacaaaactgcacttgtacccct
i macNem1.NW_012011356v1   I 4143 C 0
s cerAty1.NW_012002711v1     360730 209 +    766320 ttataagtgggagctaaataatgtgtgcacgtgaacacagaattcagaataatagacattggagacttggaaaggtgaggtgggaagaggtga-ggatgagaaattacctaatgggtataatacacactatctgggtgatggttacactaaaagcccagacttaaccactacacaatatattcatgtaacaaaactgcacttgtacccct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28818591 210 -  71996105 ttataagtgggagctaaatgatgtgtgcacatgaacacagaattcagaataatagacattggagacttggaaaggtgaggtgggaaggggtgagggatgagaaattacctaatgggtataatacacactatctgggtgatggttacactaaaagcccagacttaaccactacacaatatattcatgtaacaaaactgcacttgtacccct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     333781 209 -    352859 ttataagtgggagctaaataatgtgtgcacgtgaacacagaattcagaataatagacattggagacttggaaaggtgaggtgggaagaggtga-ggatgagaaattacctaatgggtataatacacactatctgggtgatggttacactaaaagcccagacttaaccactacacaatatattcatgtaacaaaactgcacttgtacccct
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2429601 210 -   3067355 ttataagtgggagctaaataatgtgtgcacatgaacacagaattcagaataatagacattggagacttgaaaaggtgaggtgggaaggggtgagggataagaaattatctaatgtgtataatacacactatctgggtgatggttacactaaaagcccagacttaaccactacacaatatattcatgtaacaaaactgcacttgtaccctt
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57762382 3602 -  94987271 I
e dasNov3.JH569098           194893 741 -    254539 I
e proCoq1.NW_012152574v1     453386 1032 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2124812 1003 -   2232465 I
e panPan2.chr6             29904512   0 + 173848474 C

a score=65603.000000
s hg38.chr6_GL000254v2_alt   696169 15 +   4827813 aaatctgtaaaagta
s panTro5.chr6             29669627 15 + 175400573 aaatctgtaaaagta
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5710707 15 +   6154872 aaatctgtaaaagta
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29939931 15 + 172585720 aaatctgtaaaagta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29603861 15 - 170955103 aaatctgtaaaagta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2602377 15 -   2996164 aaatctgtaaaagta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     360939 15 +    766320 aaatctgtaaaagta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28818801 15 -  71996105 aaatctgcaaaagta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     333990 15 -    352859 aaatctgtaaaagta
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2429811 15 -   3067355 aaatctgtaaaagta
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57765984 15 -  94987271 AAATCTGCAGTCTTg
i mm10.chr17               I 3602 C 0
e dasNov3.JH569098           194893 741 -    254539 I
e proCoq1.NW_012152574v1     453386 1032 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2124812 1003 -   2232465 I
e panPan2.chr6             29904512  0 + 173848474 C

a score=582883.000000
s hg38.chr6_GL000254v2_alt   696184 136 +   4827813 GATATGAAAA--G--AAAAGAAATGG---------GAAAAACACAGAAACAGTAGGATATATGAGAGGCTGTTATTCCCTTAAAGACAGAGGGGAATCAGGGAATAGAGGAAG-----------------------------TTGATGAATTTAGAGTTGAAAACTCCAAG--GAATAGA
s panTro5.chr6             29669642 136 + 175400573 GATATGAAAA--G--AAAAGAAATGG---------GAAAAACACAGAAACAGTAGGATATATGAGAGGCTGTTATTCCCTTAAAGACAGAGGGGAATCAGGGAATAGAGGAAG-----------------------------TTGATGAATTTAGAGTTGAAAACTCCAAG--GAATAGA
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5710722 136 +   6154872 GATATGAAAA--G--AAAAGAAATGG---------GAAAAACACAGAAACAGTGGGATATATGAGAGGCTGTTATTCCCTTAAAGACAGAGGGGAATCAGGGAATAGAGGAAG-----------------------------TTGATGAATTTAGAATTGAAAACTCCAAG--GAATAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29939946 136 + 172585720 GATATGAAAA--G--AAGAGAAATGG---------GAAAAACACAGCAACAGTAGGATATATGAGAGACTGTTATTCCCTTAAAGACAGAGGGGAATCAGGGAATAAAGGAAG-----------------------------TTGATGAATTTAGAGTTGAAAACTCCAAG--CAGTAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29603876 136 - 170955103 gatatgaaaa--g--aagagaaaTGG---------GAAAAACACAGCAACAGTAGGATATATGAGAGACTGTTATTCCCTTAAAGACAGAGGGGAATCAGGGAATAAAGGAAG-----------------------------TTGATGAATTTAGAGTTGAAAACTCCAAG--CAGTAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2602392 136 -   2996164 GATATGAAAA--G--AAGAGAAATGG---------GAAAAACACAGCAACAGTAGGATATATGAGAGGCTGTTATTCCCTTAAAGACAGAGGGGAATCAGGGAATAAAGGAAG-----------------------------TTGATGAATTTAGAGTTGAAAACTCCAAG--CAATAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     360954 136 +    766320 GATATGAAAA--G--AAGAGAAATGG---------GAAAAACACAGCAACAGTAGGATATATGAGAGGCTGTTATTCCCTTAAAGACAGAGGGGAATCAGGGAATAAAGGAAG-----------------------------TTGATGAATTTAGAGTTGAAAACTCCAAG--CAGTAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28818816 136 -  71996105 GATATGAAAA--G--AAGAGAAATGG---------GAAAAACACAGCAACAGTAGGATATATGAGAGGCTGTTATTCCCTTAAAGACAGAGAGGAATCAGGGAATAAAGGAAG-----------------------------TTGATGAATTTAGAGTTGAAAACTCCAAG--CAATAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     334005 136 -    352859 GATATGAAAA--G--AAGAGAAATGG---------GAAAAACACAGCAACAGTAGGATATATGAGAGGCTGTTATTCCCTTAAAGACAGAGGGGAATCAGGGAATAAAGGAAG-----------------------------TTGATGAATTTAGAGTTGAAAACTCCAAG--CAGTAGA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2429826 145 -   3067355 GATATGAAAA--G--AAGAGAAACGGGAAAAACACGAAAAACACAGCAACAGTAGAATATATGAGAGGCTGTTATTCCCTTAAAGACAGAGGGGAATCAGGGAATAAAGGAAG-----------------------------TTGATGAATTTAGAGTTGAAAACTCCAAG--CAATAGA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2125815 114 -   2232465 GATGTGAGAACTA--CAGAGCAATGG---------GAAAGACACGGCAAC---TGGGTGGAAGAGAGGCCATTATTCCCTTAGAAACAGAGGGATAC---AGAATGGAGGGAA-----------------------------TTGAGGAATTTAGAGTTG--------------------
i otoGar3.GL873742         I 1003 C 0
s mm10.chr17               57765999 155 -  94987271 aaaaggaaaa--ggaaaaaaaaaagg---------aggaaaaggagaagtagTGAGAT----------TTGAAATTTGCAGAAAAATGATGAAGAAACAAGGTGAATGAGAAGTATGTTATTAGCATAGGCTTAAGCAGATATTGAAGAATTTGCA----AAAATCCCAGGATGGGTGGA
i mm10.chr17               C 0 I 2
e dasNov3.JH569098           194893 741 -    254539 I
e proCoq1.NW_012152574v1     453386 1032 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512   0 + 173848474 C

a score=382812.000000
s hg38.chr6_GL000254v2_alt   696320 71 +   4827813 GCTGAATTTGGAATTGGAAAACTC-AAAAAACTGCAGGAAGAGTTTGAAATCAACAGGAATTTCACCATACT
s panTro5.chr6             29669778 71 + 175400573 GCTGAATTTGGAATTGGAAAACTC-AAAAAACTGCAGGAAGAGTTTGAAATCAACATGAATTTCACCATACT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5710858 71 +   6154872 GCTGAATTTGGAATTGGAAAACTC-AAAAAACTGCAGGAAGAGTTTGAAATCAACATGAATTTCACCATACT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29940082 71 + 172585720 GCTGAATTTGGAATTGGAAAATTC-AAAAAACTGCAGGAAGAGTTTGAAATCAACATGAATTTCACCATACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29604012 71 - 170955103 GCTGAATTTGGAATTGGAAAATTC-AAAAAACTGCAGGAAGAGTTTGAAATCAACATGAATTTCACCATACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2602528 71 -   2996164 GCGGAATTTGGAATTGGAAAACTC-AAAAAACTGCAGGAAGAGTTTGAAATCAATGTGAATTTCACCATACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     361090 71 +    766320 GCTGAATTTGGAATTGGAAAATTC-AAAAAACTGCAGGAAGAGTTTGAAATCAACATGAATTTCACCATACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28818952 71 -  71996105 GCGGAATTTGGAATTGGAAAACTC-AAAAAACTGCAGGAAGAGTTTGAAATCAATGTGAATTTCACCATACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     334141 71 -    352859 GCTGAATTTGGAATTGGAAAATTC-AAAAAACTGCAGGAAGAGTTTGAAATCAACATGAATTTCACCATACT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2429971 72 -   3067355 GCTGAATTTGGAATTGGAAAACTCAAAAAAACTGCAGGAAGAGTTTGAAATCAACGTGAATTTCACCATAGT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     454418 71 +    730504 GCTGAATTTAGAGTTGGAAAACTC-CAAAAAATGCAGGAAGAATCTGAAAAGAAGATGAATTTCACCATACT
i proCoq1.NW_012152574v1   I 1032 I 77
s otoGar3.GL873742          2125929 55 -   2232465 ----------------GAAAACTC-AAAAAAATACAAGAAGAATCTGAAATCAAGGTTAATTTCACCATACC
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57766156 65 -  94987271 GCTGGCTTTGAAGACAGA-------AAAAACATGCAGTATAATTTATGAATCAAGGTGACCTTAATCATATT
i mm10.chr17               I 2 C 0
e dasNov3.JH569098           194893 741 -    254539 I
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512  0 + 173848474 C

a score=352881.000000
s hg38.chr6_GL000254v2_alt   696391 77 +   4827813 GACTGGTAGAGAAGTAAGAATAGTGCAAAATGCCTGTTTGTTGTCTAACGAACAATCAGCCACACACTCAATTCTAA
s panTro5.chr6             29669849 77 + 175400573 GACTGGTAGAGAAGTGAGAATAGTGCAAAATGCCTGTTTGTTGTCTAACGAACAATCAGTCACACACTCAATTCTAA
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5710929 77 +   6154872 AACTGGTAGAGAAGTGAGAATAGTGCAAAATGCCTGTTTGTTGCCTAACGAACAATCAGTCACACACTCAATTCTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29940153 77 + 172585720 AACTGGTAGAGAAGTGAGAATAGTGCAAAATGCCTGTCTGTTGTCTAAAGAACAGTCAGTCACACACTCAATTCTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29604083 77 - 170955103 AACTGGTAGAGAAGTGAGAATAGTGCAAAATGCCTGTCTGTTGTCTAAAGAACAGTCAGTCACACACTCAATTCTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2602599 77 -   2996164 AACTGGTAGAGAAGTGAGAATAGTTCAAAATGCCTGTCTGTTGTCTCAAGAACAATCAGTCACACACTCAATTCTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     361161 77 +    766320 AACTGGTAGAGAAGTGAGAATAGTGCAAAATGCCTCTCTGTTGTCTAAAGAACAATCAGTCACACACTCAATTCTAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28819023 77 -  71996105 AACTGGTAGAGAAGTGAGAATAGTGCAAAATGCCTGTCTGTTGTCTAAAGAACAGTCAGTCACACACTCAATTCTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     334212 77 -    352859 AACTGGTAGAGAAGTGAGAATAGTACAAAATGCCTGTCTGTTGTCTAAAGAACAATCAGTCACACACTCAATTCTAA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2430043 77 -   3067355 AACTGGTAGAGAAGTGAGAATAGTGTAAAATGCCTGTCTGTTGTCTAAAGAACAATCAGTCACACACTCAATTCTAA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2125984 68 -   2232465 AACTGGTAGATAAATGAGAATAGCATGAAGTATCTGTACAGTATGTGAAGAACA---------AGAATCAATTCTAG
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57766221 65 -  94987271 AACTGGTCAGAAAATGAGAATATTGAAAAAT----------TGTCTAATGAGCAAGGACTCCCAGA--CAATCCTAA
i mm10.chr17               C 0 C 0
e dasNov3.JH569098           194893 741 -    254539 I
e proCoq1.NW_012152574v1     454489 77 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512  0 + 173848474 C

a score=246037.000000
s hg38.chr6_GL000254v2_alt   696468 43 +   4827813 GTAAAAACCATAACCCTCATTCAACCCA----GACTCTGAGATAGCA
s panTro5.chr6             29669926 43 + 175400573 GTAAAAACCATAACCCTCATTCAACCCA----GACTCTGAGATAGCA
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5711006 43 +   6154872 GTAAAAACCATAACCCTCATTCAACCCA----GACTCTGAGATAGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29940230 43 + 172585720 GTAAAAACCATAACCCTCATTCACCCCA----GACTCTGAGATAGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29604160 43 - 170955103 GTAAAAACCATAACCCTCATTCACCCCA----GACTCTGAGATAGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2602676 43 -   2996164 GTAAAAACCATAACCCTCATTCACCCCA----GACTCTGAGATAGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     361238 43 +    766320 GTAAAAACCATAACCGTCATTCACCCCA----GACTCTGAGATAGCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28819100 43 -  71996105 GTAAAAACCATAACCCTCATTCACCCCA----GACTCTGAGATAGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     334289 43 -    352859 GTAAAAACCATAACCCTCATTCACCCCA----GACTCTGAGATAGCA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2430120 43 -   3067355 GTAAAAACCATAACCTTCATTCACCCCA----GACTCTGAGATAGCA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     454566 43 +    730504 GTAAAAGCCACAGCCCTCATGCAACCCA----GATACTGAGCTAGCA
i proCoq1.NW_012152574v1   I 77 C 0
s otoGar3.GL873742          2126052 43 -   2232465 GTAAAAATCACAGCCCTCGTCCAATACA----GACACTGAGACAACA
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57766286 47 -  94987271 CTTAGAGCTGCATCTTTCATCCAACCAACCATAACTCTGAGACAGCA
i mm10.chr17               C 0 C 0
e dasNov3.JH569098           194893 741 -    254539 I
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512  0 + 173848474 C

a score=104163.000000
s hg38.chr6_GL000254v2_alt   696511 19 +   4827813 TAGAGTCCTTAATTAAAAT-----
s panTro5.chr6             29669969 19 + 175400573 TAGAGTCCTTAATTAAAAC-----
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5711049 19 +   6154872 TAAAGTCCTTAATTAAAAC-----
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29940273 19 + 172585720 TAGAGTCCTTAATTAAAAC-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29604203 19 - 170955103 TAGAGTCCTTAATTAAAAC-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2602719 19 -   2996164 TAGAGTCCTTAATTAAAAC-----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     361281 19 +    766320 TAGAGTCCTTAATTAAAAC-----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28819143 19 -  71996105 TAGAGTCCTTAACTAAAAC-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     334332 19 -    352859 TAGAGTCCTTAATTAAAAC-----
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2430163 19 -   3067355 TAGAGTCCTTAATTAAAAC-----
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     454609 19 +    730504 TAGAGCCCTCAGTTAAAAT-----
i proCoq1.NW_012152574v1   C 0 I 61
s otoGar3.GL873742          2126095 19 -   2232465 GAGAGCCCTCAGATAAAAC-----
i otoGar3.GL873742         C 0 I 17
s mm10.chr17               57766333 19 -  94987271 GAGAGTCCGCAGCAAAGAT-----
i mm10.chr17               C 0 I 16
s dasNov3.JH569098           195634 24 -    254539 TAAAGTATGTATTTAAATATATAT
i dasNov3.JH569098         I 741 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512  0 + 173848474 C

a score=164646.000000
s hg38.chr6_GL000254v2_alt   696530 39 +   4827813 --------GAGCAATTCAAAGAATATTCCAGGAAAAA----ATATTTTAAA-
s panTro5.chr6             29669988 39 + 175400573 --------TAGCAATTCAAAGAATATTCCAGGAAAAA----ATATTTTAAA-
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5711068 39 +   6154872 --------TAGCAATTCAAAGAATATTCCAGGAAAAA----ATATTTTAAA-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29940292 39 + 172585720 --------TAGCAATTCAAAGAATATTCCAGGAAAAA----CTAGTTTAAA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29604222 39 - 170955103 --------TAGCAATTCAAAGAATATTCCAGGAAAAA----CTAGTTTAAA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2602738 39 -   2996164 --------TAGCAATTCAATGAATATTCCAGGAAAAA----CTCGTTTAAA-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     361300 39 +    766320 --------TAGCAATTCAAAGAATATTCCAGGAAAAA----CTAGTTTAAA-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28819162 39 -  71996105 --------TAGCAATTCAAAGAATATTCCAGGAAAAA----CTAGTTTAAA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     334351 39 -    352859 --------TAGCAATTCAAAGAATATTCCAGGAAAAA----CTAGTTTAAA-
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2430182 39 -   3067355 --------TAGCAATTCAAAGAATATTCCAGGAAAAA----CTAGTTTAAA-
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2126131 43 -   2232465 --------AAGCAATTCAGAAAACATTCCAGGAAAAAAAATATTATTTGAA-
i otoGar3.GL873742         I 17 I 1
s mm10.chr17               57766368 37 -  94987271 --------AAGGAGTTTGTGTGACATTTAAG--AACA----CATATTTACA-
i mm10.chr17               I 16 I 1
s dasNov3.JH569098           195658 43 -    254539 GCAGAAAAAAACTAATCAAGGAACATAC-----AAAT----ATTTTTTGAAG
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     454628 61 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512  0 + 173848474 C

a score=1264528.000000
s hg38.chr6_GL000254v2_alt   696569 252 +   4827813 AAATATATACAAAACTGTACATTTTAATTCATCTTTAGGTATTAGAAAAAAATTTATTCTC----ATAT-TTTGAAATGTCTGCTAAACAAACATGTTATGTTTGTAAGCAGAAAAC-------C----AAAAAGTTAA--------TTCAGTTTGATTTTTTTAATCTGTTAATTCTCCTCAAGTCTCTTCAGTAATTACTCCATAATAAAACATTAAAATATACTTAAAAGGTTTTAAAAGAAAACAGTATAATTTTAAGTATATCCCAGTTTT
s panTro5.chr6             29670027 252 + 175400573 AAATATATACAAAACTGTACATTTTAATTCATCTTTAGGTATTAGAAAAAAATTTATTCCC----ATAT-TTTGAAATGTCTGCTAAACAAACATGTTATGTTTGTAAGCAGAAAAC-------C----AAAAAGTTAA--------TTCAGTTTGATTTTTTTAATCTGTTAATTCTCCTCAAGTCTCTTCAGTAATTACTCCATAATAAAACGTTAAAATATACTTAAAAGGTTTTAAAAGAAAACAGTATAATTTTAAGCATATCCCAGTTTT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5711107 247 +   6154872 AAATATATACAAAACTGTACATTTTAATTCATCTTTAGGTATTAGAAAAAAATTTATTCTC----ATAT-TTTGAAATGTCTGCTAAACAAAC-----ATGTTTGTAAGCAGAAAAC-------C----AAAAAGTTAA--------TTCAGTTTGATTTTTTTAATCTGTTAATTCTCCTCAAGTCTCTTCAGTAATTACTCCATAATAAAACATTAAAATATACTTAAAAGGTTTTAAAAGAAAACAGTATAATTTTAAGCATATCCCAGTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29940331 247 + 172585720 ATATATATACAAAACTGTACATTTTAATTCATCTTTAGGAATTAAAAAAAA--TTATTCTC--ATATAT-TTTGAAATGTCTGCTAAACAAACATGTTATCTTTATAAGCAGAAAAC------------AAAAA---AA--------TTCAGTTTGA-TTTTTTAATCTGTTAATTCTCCTCAAGTCTCTTCAGTAATTACTCCATAATAAAACATTAAAATATACTTAAAAGGTTTTAAAAGAAAACAGTAGAATTTTAAGCATATCCCAGTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29604261 247 - 170955103 ATATATATACAAAACTGTACATTTTAATTCATCTTTAGGAATTAAAAAAAA--TTATTCTC--ATATAT-TTTGAAATGTCTGCTAAACAAACATGTTATCTTTATAAGCAGAAAAC------------AAAAA---AA--------TTCAGTTTGA-TTTTTTAATCTGTTAATTCTCCTCAAGTCTCTTCAGTAATTACTCCATAATAAAACATTAAAATATACTTAAAAGGTTTTAAAAGAAAACAGTAGAATTTTAAGCATATCCCAGTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2602777 247 -   2996164 ATATATACACAAAACTGT--ATTTTAATTCATCTTCAGGAATTAAAAAAAA--TTATTCTC--ATATAT-TTTGAAATCTCTGCTAAACAAACATGTTATCTTTATAAGCAGAAAAC------AA----AAAAA---AA--------TTCAGTTTGA-TTTTTTAATCTGTTAATTCTCCTCAAGTCTCTTCAGTAATTACTCCATAATAAAACATTAAAATATACTTAAAAGGTTTTAAAAGAAAACAGTAGAATTTTAAGCATATCCCAGTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     361339 246 +    766320 ATACATATACAAAACTGTACATTTTAATTCATCTTTAGGAATTAAAAAAAA----ATTCTC--ATATAT-TTTGAAATGTCTGCTAAACAAACATGTTATCTTTATAAGCAGAAAAC-------C----AAAAA---AA--------TTCAGTTTGA-TTTTTTAATCTGTTAATTCTCCTCAAGTCTCTTCAGTAATTACTCCATAATAAAACATTAAAATATACTTAAAAGGTTTTAAAAGAAAACAGTAGAATTTTAAGCACATCCCAGTTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28819201 250 -  71996105 ATATATATACAAAACTGTACATTTTAATTCATCTGCAGGAATTAAAAAAAA--TTATTCTC--ATATAT-TTTGAAATCTCTGCTAAACAAACATGTTATCTTTATAAGCAGAAAAC----AAAA----AAAAA---AA--------TTCAGTTTGA-TTTTTTAATCTGTTAATTCTCCTCAAGTCTCTTCAGTAATTACTCCATAATAAAACATTAAAATATACTTAAAAGGTTTTAAAAAAAAACAGTATAATGTTAAGCATATCCCA-TTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     334390 248 -    352859 ATACATATACAAAACTGTACATTTTAATTCATCTTTAGGAATTAAAAAAAA--TTATTCTC--ATATAT-TTTGAAATGTCTGCTAAACAAGCCTGTTATCTTTATAAGCAGAAAAC-------C----AAAAA---AA--------TTCAGTTTGA-TTTTTTAATCTGTTAATTCTCCTCAAGTCTCTTCAGTAATTACTCCATAATAAAACATTAAAATATACTTAAAAGGTTTTAAAAGAAAACAGTAGAATTTTAAGCATATCCCAGTTTT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2430221 244 -   3067355 ATATATATACAAAACTGTACATTTTAATTCATCTTTAGGAATTAAAAAAA-----ATTCTC--ATATAT-TTTGAAATGTCTGCTAAACAAACACGTTATCTTTATAAGCAGAAAAC-------A----AAAAA---AA--------TTCAG-TTGA-TTTTTTAATCTGTTAATTCTCCTCAAGTCTCTTCAGTAATTACTCCATAATAAAACATTAAAATATACTTAAAAGGTTTTAAAAGGAAACAGTATAATTTTAAGCATATCCCAGTTTT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     454689 249 +    730504 AAATATATACCAAACTATAAATTTTAATTAATCTTTAGGAAATAAGAAAAG-TTTATTCTC--ACATAT-TTTGCAATGTCTGCTAAACA----TGTTATTTTTATAAATGGAAAAC----AAAC----AGTAA---AT--------TTTAGTTTGGTTTTTTTAATCTTTTAACTGTCTTCAAATCTCTTTAGTAATTACTCCATAATAAAGCAGAAAAATATACTTAAAAGGTTTTAAAAGAAAATAGCATGATTTTAAGTATATCTCAGTTTT
i proCoq1.NW_012152574v1   I 61 I 278
s otoGar3.GL873742          2126175 249 -   2232465 AACTATATACCAAACTATAAATTTTAATTTATCTTTAGGAAAT---AAAAG-TTTATTCTC--ACATAT-TTTGCAATGCCTGACAAAAA----TGTTACCTTTATAAATAGAAAAG----AAACTGTAAATAA---AT--------TTTAGTTTGGTCTTTTAAACCTTTTAAATCTCTTCAAATATCTTTAGTAATTACTCCATGATAAAGCAG-AAAATATACTTAAAATGTGTTAAAAGAAAATATAGTGATTGTAAGGATACCCCAGGTGT
i otoGar3.GL873742         I 1 I 1
s mm10.chr17               57766406 171 -  94987271 GAATCTATGCTGAATTGTAGTTTGTAATTTTCCTCTAAAACATAAGAAAAC-TTTACTCCC--TTATACACTTATAATAACTGCTAAATG----TGTTATTTTTATAAATACCAAAC------------AATAA--------------------------------------------------------------------------------------ATAAATTTCAAAGGTTTTAAATGAATATTATATAACATAAAGTATATTCAAGTTTT
i mm10.chr17               I 1 C 0
s dasNov3.JH569098           195701 252 -    254539 ACCCATATACCAAATTGA--ATTTTAGTTTATCTTAGGGAAATGAGGAAAT-TGTATTTTCCTATATAT-TTTTCAATAGCTGCTAAATG----TGTAAT-TTTATAAATAGAAAAAACAAACAC----AAAAG---AATTTTTCTGTTTGCTTTGA-TTTTTTA----TCTAACACTCTTCAAGCCTTTTCTGCAATTACTCCATAGTAGCAG---AAAATATACTTTAAAACATTTATAAGAAAATAGCATTAATTTAGGCAGATCCCAATTTT
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512   0 + 173848474 C

a score=1084914.000000
s hg38.chr6_GL000254v2_alt   696821 280 +   4827813 GTCAAGCCATGGGATAGCAGGAGGAAAACTTTCCACCATGAAAACA----TTAGTATGAGGGTGTCTCGCTTCTTCCTACTCTGT-----AACATATCAACTGAAGCTTGGGGAGCATGAATATCTACTGTTCCCCATCTCCAAAAGAGAAGAGAGAATTAAAAAAATAAGTCAGTATGCACCCAGAAGGATTAGAAATCAACTTTTAAAAACATCCAATGGAGAAAAGAGCAGCACTGGTATTCTAGAGAAAT-ACTGCGGGA-CTTCTTGAAATGATTTTTAATAAAAG
s panTro5.chr6             29670279 280 + 175400573 GTCAAGCCATGGGATAGCAGGAGGAAAACTTTCCACCATGAAAACA----TTAGTATGAGGGTGTCTCGCTTCTTCCTACTCTGT-----AACATATCAACTGAAGCTTGGGGAGCATGAATGTCTACTGTTCCCTATCTCCAAAAGAGAAGAGAGAATTAAAAAAATAAGTCAGTATGCACCCAGAAGGATTAGAAATCAACTTTTAAAAACATCCAATGGAGAAAAGAGCAGCACTGGTATTCTAGAGAAAT-ACTGTGGGA-CTTCTTGAAATGATTTTTAATAAAAG
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5711354 280 +   6154872 GTCAAGCCATGGGATAGCAGGAGGAAAACTTTCCACCATGAAAACA----TTAGTATGAGGGTGTCTCGCTTCTTCCTACTCTGT-----AATATATCAACTGAAGCTTGGGGAGCATGAATATCTACTGTTCCTCATCTCCAAAAGAGAAGAGAGAATTAAAAAAATAAGTCAGTATGCACCCAGAAAGATTAGAAATCAACTTTTAAAGGCATCCAATGGAGAAAAGAGCAGCACTGGTATTCTAGAGAAAT-ACTGCGGGA-CTTCTTGAAATGATTTTTAATAAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29940578 258 + 172585720 GTCAAGCCGTGGGATAGCAGCAGGAAAACTTTCCACCATGAAAACA----TTAGTATGAGGGTGTCTCGCTT----------------------------CTGAAGCGTGGGGAGCATGAATATCTACTGTTCCCCATCTCTGAAAGAGAAGAGAGAATTTAAAAAATAAGTTAGTACGTATCCAGAAGGATTAGAAATCAACCTTTTAAAAAATCCAATAGAGAAAATAGCAGCACTGGAATTCTAGAGAAATAACGGCGGGA-CTTCTTGAAATGATTTTTAATAAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29604508 258 - 170955103 GTCAAGCCGTGGGATAGCAGCAGGAAAACTTTCCACCATGAAAACA----TTAGTATGAGGGTGTCTCGCTT----------------------------CTGAAGCGTGGGGAGCATGAATATCTACTGTTCCCCATCTCTGAAAGAGAAGAGAGAATTTAAAAAATAAGTTAGTACGTATCCAGAAGGATTAGAAATCAACCTTTTAAAAAATCCAATAGAGAAAATAGCAGCACTGGAATTCTAGAGAAATAACGGCGGGA-CTTCTTGAAATGATTTTTAATAAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2603024 258 -   2996164 GTCAAGCCATGGGATAGCAGCAGGAAAATTTTACACCATGAAAACA----TTAGTATGAGGGTGTCTCGCTT----------------------------CTGAAGCGTGGGGAGCATGAATATCTACTGTTCCCCATCTCTGAAACAGAAGGGAGAATTTAAAAAATAAGTTAGTATGTATCCAAAAGGATTAGAAATCAACCTTTTAAAAAATCCAATGGAGAAAATAGCAGCACTGGAATTCTAGAGAAATAAGAGCGGGA-CTTCTTGAAATGATTTTTAATAAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     361585 257 +    766320 GTCAAGCCGTGGGAGAGCAGCAGGAAAACTTTCCACCACGAAAACA----TTAGTATGAGGG-GTCTCGCTT----------------------------CTGAAGCGTGGGGAGCATGAATATCTACTGTTCCCCATCTCTGAAAGAGAAGAGAGAATTTAAAAAATAAGTTAGTATGTATCCAGAAGGATTAGAAATCAACCTTTTAAAAAATCCAATGGAGAAAATAGCAGCACTGGAATTCTAGAGAAATAACGGCGGGA-CTTCTTGAAATGATTTTTAATAAAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28819451 258 -  71996105 GTCAAGCCATGGGATAGCAGCAGGAAAACTTTCCACCATGAAAACA----TTAGTATGAAGGTGTCTCGCTT----------------------------CTGAAGCGTGGGAAGCATGAATACCTACTGTTCCCCATCTCTGAAACAGAAGGGAGAATTTAAAAAATAAGTTAGTATGCACCCAGAAGGATTAGAAATCAACCTTTTAAAAAATCCAGTGGAGAAAATAGCAGCACTGGAATTCTAGAGAAATAAGAGCGGGA-CTTCTTGACATGATTTTTAATAAAAG
i chlSab2.chr17            C 0 I 245
s manLeu1.NW_012099655v1     334638 258 -    352859 GTCAAGCCGTGGGATAGCAGCAGGAAAACTTTCCACCACGAAAACA----TTAGTATGAGGGTGTCTCGCTT----------------------------CTGAAGCGTGGGGAGCATGAATATCTACTGTTCCCCATCTCTGAAAGAGAAGCGAGAATTTAAAAAATAAGTTAGTATGTATCCAGAAGGATTAGAAATCAACCTTTTAAAAAATCCAATGGAGAAAATAGCAGCACTGGAATTCTAGAGAAGTAATGGCAGGA-CTTCTTGAAATGATTTTTAATAAAAG
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2430465 258 -   3067355 GTCAAGCCATGGGATAGCAGCAGGAAAACTTTCCACCATGAAAACA----TCAGTATGAGGGTGTCTTGCTT----------------------------CTGAAGCGTGGGGAGCATGAATATCTACTGTTCCCCATCTCTGAAAGGGAAGAGAGAATTTAAAAAATAAGTTAGTATGCATCCAGAAGGATTAGAAATCAACCTTTTAAAAAATCCAATGGAGAAAACAGCAGCACTGGAATTCTAGAGAAATAACGGTGGGA-CTTCTTGAAATGATTTTTAATAAAAG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2126425 277 -   2232465 TTTATGCCACCAGAAAGTAAAAGGATGACTTCCCACCAAGAAAAAA----CTTGTGCGAGGGCGTCCTGCTTCTTCTTTCTTCCTAAAAAAAAATACCAACTAAAGCTCTCAAAGTGTGAATGTC-ATTGT--CCCATCCTCAGTGGAGAAGAG---GTGGGGGACACAAGTTGCAGTGCTACAGAAAGGATCTGAAATTGTCTTTTTAAAG-GTCCAGTGGAGGAAGTAACAGCACTAGGATTCTAGAAAGAC-ACTGTGGAATTTTCCTGAATTTTTTTTTAAAGAG--
i otoGar3.GL873742         I 1 C 0
s mm10.chr17               57766577 199 -  94987271 CCCATACCGTGAGATTGAAGGACAAGA-------GCCAAGGCAAGA----ACAGTTGCTGTGTGTC----------------------------------CAGA-------GGAGCAC-ACTATC------CCCCCTTCTCTATATGACCAG---GAATGCAGG--------------------GGAAAGATTGGAG--TGATCTTTTAAGGAGTCCA-TGGAGGAAACAGCAACAACAGGACCTTGAAGGAAG------GGGA-TTTCCTAAAAATGCTTGCTACAAAAT
i mm10.chr17               C 0 I 1
s dasNov3.JH569098           195953 266 -    254539 GTTATACCATGAGAGAGTAGGAGAGCACATTTCCACCACGAAAAAAAAATTTGGGGTGAGGGTCTCTTCCTA------------CTATATAACATAACTCCTGAAACTTGGAGAGCATGAATATCTACTCTTCTCCATCTCCAGGAGA-AGGAGAGAA---AGAACACAGGCTCG-ATCTAACAGGCAAGATTAGAAATCAATTTTT---AAGGTCCAATGGAAGAAGTAGCAAAAGAAGAATTCCAAAGGAAG-ATGGC--AA-TTTCCTAAAATGCCTTTGAAAAGAG-
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     454938 278 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512   0 + 173848474 C

a score=10651.000000
s hg38.chr6_GL000254v2_alt   697101 2 +   4827813 AC
s panTro5.chr6             29670559 2 + 175400573 AC
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5711634 2 +   6154872 AC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29940836 2 + 172585720 AC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29604766 2 - 170955103 AC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2603282 2 -   2996164 AC
i macNem1.NW_012011356v1   C 0 I 250
s cerAty1.NW_012002711v1     361842 2 +    766320 AC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28819954 2 -  71996105 AC
i chlSab2.chr17            I 245 C 0
s manLeu1.NW_012099655v1     334896 2 -    352859 AC
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2430723 2 -   3067355 AC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2126702 2 -   2232465 AC
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57766777 2 -  94987271 GC
i mm10.chr17               I 1 C 0
s dasNov3.JH569098           196219 2 -    254539 GT
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     454938 278 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512 0 + 173848474 C

a score=7098.000000
s hg38.chr6_GL000254v2_alt   697103 1 +   4827813 T
s panTro5.chr6             29670561 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5711636 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29940838 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29604768 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2603534 1 -   2996164 T
i macNem1.NW_012011356v1   I 250 C 0
s cerAty1.NW_012002711v1     361844 1 +    766320 T
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28819956 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     334898 1 -    352859 T
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2430725 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2126704 1 -   2232465 T
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57766779 1 -  94987271 T
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           196221 1 -    254539 T
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     454938 278 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512 0 + 173848474 C

a score=188329.000000
s hg38.chr6_GL000254v2_alt   697104 25 +   4827813 TTTTGACTCTCTGGGTTAATTGAAA
s panTro5.chr6             29670562 25 + 175400573 TTTTGACTCTCTGGGTTAATTGAAA
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5711637 25 +   6154872 TTTTGACTCTCTGGGTTAATTGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29940839 25 + 172585720 TTTTGACTCTCTGGGTTAATTGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29604769 25 - 170955103 TTTTGACTCTCTGGGTTAATTGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2603535 25 -   2996164 TTTTGACTCTCTGGGTTAATTGAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     361845 25 +    766320 TTTTGACTCTCTGGGTTAATTGAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28819957 25 -  71996105 TTTTGACTCTCTGGGTTAATTGAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     334899 25 -    352859 TTTTGACTCTCTGGGTTAATTGAAA
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2430726 25 -   3067355 TTTTGACTCTCTGGGTTAATTGAAA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     455216 25 +    730504 TTTTGACTCTCTGGGTTAATTGAAA
i proCoq1.NW_012152574v1   I 278 I 206
s otoGar3.GL873742          2126705 24 -   2232465 -TTTGACCCTCTAAATTAATTAAAA
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57766780 25 -  94987271 TTTGTGCTCTCTAGGTTAATGGAAA
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           196222 25 -    254539 CTTTGACTCTCTGGGTTAATTGAAA
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512  0 + 173848474 C

a score=139441.000000
s hg38.chr6_GL000254v2_alt   697129 30 +   4827813 GTTGCTAGTGATTACAGGATAAACAGCTAT
s panTro5.chr6             29670587 30 + 175400573 GTTGCTAGTGATTACAGGATAAACAGCTAT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5711662 30 +   6154872 GTTGCTAGTGATTACAGGATAAACAGCTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29940864 30 + 172585720 GTTACTACTGATTACAGGATAAACAGCTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29604794 30 - 170955103 GTTACTACTGATTACAGGATAAACAGCTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2603560 30 -   2996164 GTTACTACTAATTACAGGATAAACAGCTAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     361870 30 +    766320 ATTACTACTGATTACAGGATACACAGCTAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28819982 30 -  71996105 GTTACTACTGATTACAGGATAAACAGCTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     334924 30 -    352859 ATTACTACTGATTACAGGATACACAGCTAT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2430751 30 -   3067355 GTTACTACTGATTACAGGATAAACAGCTAT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2126729 30 -   2232465 TCAGTTACTGATTAGAGGGGAAATGGCTAT
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57766805 29 -  94987271 TACGTTACTAATTAGAGGA-AAGTTTCTGT
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           196247 30 -    254539 TATGTTACTGATCGAAGGAAGAAAGGCTAT
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     455241 206 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512  0 + 173848474 C

a score=427504.000000
s hg38.chr6_GL000254v2_alt   697159 65 +   4827813 AAAAACCAGCCATTTAAC--TTTT----TTAAAGAATCTGTGAACTAAGCTGTAAAGAATTTTACAAAAAT
s panTro5.chr6             29670617 65 + 175400573 AAAAACCAGCCATTTAAC--TTTT----TTAAAGAATCTGTGAACTAAGCTGTAAAGAATTATACAAAAAT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5711692 65 +   6154872 AAAAACCAGCCATTTAAC--TTTT----TTAAAGAATCTGTGAACTAAGCTGTAAAGAATTATACAAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29940894 65 + 172585720 AAAAACCAGCCATTTAAC--TTTT----TTAAAGAATCTGTGAACTAAGATGTAAAGAATTATACAAAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29604824 65 - 170955103 AAAAACCAGCCATTTAAC--TTTT----TTAAAGAATCTGTGAACTAAGATGTAAAGAATTATACAAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2603590 65 -   2996164 AAAAACCAGCCATTTAAC--TTTT----TTAAAGAATCTGTGAACTAAGATGTAAAGAATTATACAAAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     361900 65 +    766320 AAAATCCAGCCATTTCAC--TTTT----TTAAAGAATCTGTGAACTAAGATGTAAAGAATTCTACAAAAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28820012 65 -  71996105 AAAAACCAGCCATTTAAC--TTTT----TTAAAGAATCTGTGAACTAAGATGTAAAGAATTATACAAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     334954 65 -    352859 AAAATCCAGCCATTTCAC--TTTT----TTAAAGAATCTGTGAACTAAGATGTAAAGAATTATACAAAAAT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2430781 65 -   3067355 AAAAACCAGCCATTTAAC--TTTT----TTAAAGAATCTGTGAACTAAGATGTAAAGAATTATACAAAAAT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     455447 65 +    730504 AAAGACCAGCCCTTTCAA--TTTT----TTAAAGGATTTGTGAACTAAGCTATAAAGAATTACACAAAAAT
i proCoq1.NW_012152574v1   I 206 I 3
s otoGar3.GL873742          2126759 65 -   2232465 AAAGTCCAATCCTTCAGA--TTTT----TTAAAGGATTTGTGAACTAAGCTGTAAAGAATTGTACAAAAAT
i otoGar3.GL873742         C 0 I 3
s mm10.chr17               57766834 67 -  94987271 CAAAAATAACCTTTCAGCTTTTTT----TTAAAGGGTCTATGAACTAAGCTGTGAAACTTTATACAGAAAT
i mm10.chr17               C 0 I 3
s dasNov3.JH569098           196277 69 -    254539 AAAGATCAAATCTTTTTT--TTTTTAAATTAAAGTATCTGTGAACTAAGTTCTAAAGAGTTATACAAAAAT
i dasNov3.JH569098         C 0 I 5767
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512  0 + 173848474 C

a score=2171231.000000
s hg38.chr6_GL000254v2_alt   697224 385 +   4827813 AAACGTACCCG---------AAATATCGACCCTGTTCTCTAAAGACAGGACTGTGAGGAGGAGATGATCTGCTAAGATTTGC-TGAAGACTTC-AGAATGTTGGAATTTCCTACCTTCAGCTCCCTCCCTGCTTGAGCTCAACC-TGAAGTAACGTAGAACATTGATTACAAATGTCACCCTTGTTACCCTCCA--CTCCTGAGCCATTTTCTCTTCCACCCTCCATCCCCTTTTCTAGCTCTCAGGCTATTCTGTCCTTTCATCGCAGTCCTTTCCCTCTATCACATGGGAGGGCAGGAAATTGCC-ACAAAGGGAGAGGCCCCTGAGAACCAATTACAGATTTACTGGAGAGCAGCCTGAAATGAGCAAGACATA-GCAGGCCCCTAAGGAAATTGTA-T
s panTro5.chr6             29670682 385 + 175400573 AAATGTACCCG---------AAATAGCGACCCTGTTCTCTAAAGACAGGACTGTGAGGAGGAGATGATCTGCTAAGATTTGC-TGAAGACTTC-AGAATGTTGGAATTTCCTACCTTCAGCTCCCTCCCTGCTTGAGCTCAACC-TGAAGTAACGTAGAACATTGATTACAAATGTCACCCTTGTTACCCTCCA--CTCCTGAGCCATTTTCTCTTCCACCCTCCATCCCCTTTTCTAGATCTCAGGCTATTCTGTCCTTTCATCGCAGTCCTTTCCCTCTATCACATGGGAGGGCAGGCAATTGCC-ACAAAGGGAGAGGCCCCTGAGAACCAATTACAGATTTACTGGAGAGCAGCCTGAAATGAGCAAGACATA-GCAGGCCCCTAAGGAAATTGTA-T
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5711757 385 +   6154872 AAACGTACCCG---------AAATAGCGACCCTGTTCTCTAAAGACAGGACTGTGAGGAGGAGATGATCTGCTAAGATTTGC-TGAAGACTTC-AGAATGTTGGAATTTCCTACCTTCAGCTCCCTCCCTGCTTGAGCTCAACC-TGAAGTAACGTAGAACATTGATGACAAATGTCACCCTTGTTACCCTCCA--CTCCTGAGCCATTTTCTCTTCTACCCTCCATCCCCTTTTCTAGCTCTCAGGCTATTCTGTCCTTTCATCGCAGTCCTTTCCCTCTATCACATGGGAGGGCAGGCAATTGCC-ACAAAGGGAGAGGCCCCTGAGAACCAATTACAGATTTACTGGAGAGCAGCCTGAAATGAGCAAGACATA-GCAGGCCCCTGAGGAAATTGTA-T
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29940959 385 + 172585720 AAACACACCTG---------AAATAGCGACCCTGTTCTCTAAAGACAGGATGGTGAGGAGGAGACTATCTGCTAAGATTTGC-TGAAGACTTC-AGAATGTTGTAATTTCCTACCTTCAGCTCCCTCCCTGCTTGAGCTCAATC-TGAAGTAACGTAGGACATTGATTACAAATGTCACTCTTGTTACCCTCCA--CTCCTGAGCCATTTTCTCTTTCACCCTCCATTCCCTTTTCTAGCTCTCAGACTATTCTGTCCCCTCATCACAGTCCTTTCCCTCTATCACATGGGAGGGCAGGCAATTGCC-AAAAAGTGAGAGGCCCCTGAGAACCAATTACATGTTTACTGGAGAGCAGCCTTAAATGAGCAAGACATA-CCAGGCCCCTAAGGAAATTGTG-T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29604889 385 - 170955103 AAACACACCTG---------AAATAGCGACCCTGTTCTCTAAAGACAGGATGGTGAGGAGGAGACTATCTGCTAAGATTTGC-TGAAGACTTC-AGAATGTTGTAATTTCCTACCTTCAGCTCCCTCCCTGCTTGAGCTCAATC-TGAAGTAACGTAGGACATTGATTACAAATGTCACTCTTGTTACCCTCCA--CTCCTGAGCCATTTTCTCTTTCACCCTCCATTCCCTTTTCTAGCTCTCAGACTATTCTGTCCCCTCATCACAGTCCTTTCCCTCTATCACATGGGAGGGCAGGCAATTGCC-AAAAAGTGAGAGGCCCCTGAGAACCAATTACATGTTTACTGGAGAGCAGCCTTAAATGAGCAAGACATA-CCAGGCCCCTAAGGAAATTGTG-T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2603655 381 -   2996164 AAAC-TACC-G---------AAATAGCGACCCTGTTCTCTAAAGACAGGAGTGT---GAGGAGACTATCTGCTAAGATTTGC-TGAAGACTTC-AGAATGTTGTAATTTCCTACCTTCAGCTCCCTCCCTGCTTGAGCTTAATC-TGAAGTAACGTAGGACATTGATTACAAATGTCTCTCTTGTTACCCTCCA--CTCCTGAGCCATTTTCTCTTTCACCCTCCATTCCCTTTTCTAGCTCTCAGACTATTCTGTCCCCTCATCACAGTCCTTTCCCTCTATCACATGGGAGGGCAGGCAATTGCCAAAAAAAAGAGAGGCCCCTGAGAACCAATTACATGTTTGCTGGAGAGCAGCCTTAAATGAGCAAGACATA-CCAGGCCCCTAAGGAAAATGTG-T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     361965 385 +    766320 AAACACACCCG---------AAATAGCGACCCTGTTCTCTAAAGACAGGATGGTGAGGAGGAGACTATCTGCTAAGATTTGC-TGAAGACTTC-AGAATGTTGTAATTTCCTACCTTCAGCTCCCTCCCTGCTTGAGCTCAATC-TGAAGTAACGTAGGACATTGATTACAAATGTCACTCTTGTTACCCTCCA--CTCCTGAGCCATTTTCTCTTCCTCCCTCCATTCCCTTTTCTAGCTCTCAGACTATTCTGTCCCCTCATCACAGTCCTTTCCCTCTATCACGTGGGAGGGCAGGCAATTGCT-AAAAAGGGAGAGGCCCCTGAGAACCAATTACATGTTTACTGGAGAGCAGCTTTAAATGAGCAAGACATA-GCAGGCCCCCAAGGAAACTGTG-T
i cerAty1.NW_012002711v1   C 0 I 318
s chlSab2.chr17            28820077 380 -  71996105 AAAC-TACC-G---------AAATAGCGACCCTGTTTTCTAAAGACAGGATTGT---GAGGAGACTATCTGCTAAGATTTGC-TGAAGACTTC-AGAATGTTGTGATTTCCTACCTTCAGCTCCTTCCCTGCTTGAGCTCAATC-TGAAGTAACGTAGGACAATGATTACAAATGTCTCTCTTGTTACCGTCCA--CTCCTGAGCCATTTTCTCTTCCACCCTCCATTCCCTTTTCTAGCTCTCAGACTATTCTGTCCCCTCATCACAGTCCTTTCCCTCTATCACATGGGAGGGCAGGCAATTGCT-AAAAAGGGAGAGGCCCCTGAGAACCAATTACATGTTTGCTGGAGAGCAGCTTTAAATGAGCAAGACATA-GCAGGCCCCTAAGGAAATTGCG-T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     335019 384 -    352859 AAACACACCTG---------AAATAGCGACCCTGTTCTCTAAAGACAGGATGGTGAGGAGGAGACTATCTGCTAAGATTTGC-TGAAGACTTC-AGAATGTTGTAATTTCCTACCTTCAGCTCCCTCCCTGCTTGAGCTCAATC-TGAAGTAACGTAGGACATTGATTACAAATGTCACTCTTGTTACCCTCCA--CTCCTGAGCCATTTTCTCTTCCACCCTCCATTCCCTTTTCTAACTCTCAGACTATTCTGTCCCCTCATCACAGTTCTTTCCCTCTATCACGTGGGAGGGCAGGCAATTGCC-AAAAAGAGAGAGGCCCCTGAGAACCAATTACATGTTTACTGGAGAGCAGCTTTAAATGAGCAAGACATA-GCAGGCCCCCAAGGAAACTGTG--
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2430846 385 -   3067355 AAACACACCCG---------AAACAGCGACCCTGTTCTCTAAAGACGGGATTGTGAGGAGGAGACTATCTGCTAAGATTTAC-TGAAGACTTC-AGAATGTTACAATTTCCTACCTTCAGCTCCTTCCCTGCTTGAGCTCAATC-TGAAGTAACGTAAGACATTGATTACAAATGTCACTCTTGTTACCCTCCA--CTCCTGAGCCATTTTCTCTTTCACCCTCCATTCCCTTTTCTAGCTCTCAAATTATTCTGTCCCCTCATCACAGTCCTTTCCCTCTATCACATGGGAGGGCAGGCAATTGCC-AAAAAGGGAGAGGCCCCTGAGAATCAATTACGTGCTTACTGGAGAGCAGCCTTAAATGAGCAAGACATA-GCAGGCCCCCAAGGAAATTGTG-T
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     455515 381 +    730504 AAACTCACTTG---------AAATAACAATCCTGCTCCCTAAAGACAAGACTGTGAAGAGGAGATTTTGAGCTAAGATGTGC-TGAAGTCTTC-AGAATGCCGGAGTTTCCTACCTTTAGCTCCCTCCCTCCTTGAGCTCAATC-TGAAATAACACAGGACATGAACTGGAAGTGTCATTCTTGCCAACTCCCA--CTCCAGAGCTATCCCCTCCTCT-CCCTCCATCCCCTTTGCCAGCTCCTAA--CATTCTGTCCTTTCACTGT-GGCCCTTCCCTTTATCACAAGGGAGGGCTAACGGTTGCC-AATAAGGGAGGGGCCCCTGAGAACCAATTACAGATTTACTGGAGAGCAGCCTTAAGTGAACAAGACAGA-GCAGACCCCTAAGGAACTTGTC-T
i proCoq1.NW_012152574v1   I 3 C 0
s otoGar3.GL873742          2126827 384 -   2232465 AAACTCACCTG---------AAATAGCAATCCTGCTCTCTAAAGACACAACTATCAAGAGAAAATGATGTGCTAAAGTTTGC-TGAAGGTGCC-CGAATGTTGGAGCTTCCTGCCTTTAGCTCCCTCCCTCCTTAAGCTCAATC-TGAAATAGCAGAGGACTCCAAATAGGTATGTAACTCTTGTCAACCTCCA--CTCTGGAACCATTCACTTCTCTACCCTTCATCTGCTTTGCCCACTCCTAA--TATTCTGTCCTTTCATTGTAGGCCCTTCCATTTATCACAAGTGAGGGTGGACAATTGCC-AAGAAAGGATAGTCCTCTGAGAACCAATTACAGATTTACTGGAGAACCATCTTAAATGAACAAGACATA-GCAGACCCCTGAGGAACTTGTCTT
i otoGar3.GL873742         I 3 C 0
s mm10.chr17               57766904 352 -  94987271 AGAT-CACCTGGGAAGCCTTAGAAAGC-AGCCTGCCCTCCACAGACAAAAC--TGGAGAAAAGAAGATGAGCTAAGATTCGCTTGAAGACTTCAAAAATGGATGAATTTCCCAATTTCAGTTCCTTCCT-------GCTTGACC-TGGAATAATTCACGGTCGTGGTTAGAAACATTTTCCTTATCACCCTCCG--TCTCTGAG----------------CCTCCATGGCCTCTTCTAGCTCCTAAGCCATCCTGCCCTCTCACTGTGAACTTTT-----TATCATAAGGGAAGGCTGGCAA------A-------AGAGGCCCCTGAGGACAAATTATAGATTTACTGCAGAGCAGCCTTAAGTGAACAAAATGAA-GCACCCCACTGAGGCATTATTA-T
i mm10.chr17               I 3 I 2
s dasNov3.JH569098           202113 347 -    254539 AAACCCACCTG---------AAATAACAGTCCTGCTCTCTGAAG-CAAGAC--TGAGGAGAAGAGTGTGTGCTGGGACTTGA-TGAAGACATC-AG--TGTTGGTGTTTGCTATCTGTGGCTCCTTTCCTCCCTGAGGTCAATTATAAAATAAAGTAGGATGCTGATTAGAAACATCACCTTTGTCACTCTACATTCTCCAGACCCATTGTTTCCTCTACCCTCCATCCCCTTTTCTAGCTCACTG-----------------------------------ATCACAATGGAGGGCTGGTAACTGCC-AAGAGGCAAGAA-CTCCTGAGAACCAATTACAGACACACCATGGAGCAGCCTTGAGTGAACAAGTGAGATCCAGAGTCCTGCAGCCTTACCC--
i dasNov3.JH569098         I 5767 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512   0 + 173848474 C

a score=935139.000000
s hg38.chr6_GL000254v2_alt   697609 165 +   4827813 TTTTTCAAAGGCGGTTTCCTGAACTGTTGGCTTGACCATAAACGGAGCAGAAACCAAAAGAGCCAAAT-GGAGCCCACCTTTCCATCCCCTTGGGG-----ACAAATGCTCTCCATTTCACCAAACATCTAAAGCCCCAATTCCTAGTCT-----CCATAACTCACCAGAAAATT---C---
s panTro5.chr6             29671067 165 + 175400573 TTTTTCAAAGGTGGTTTCCTGAACTGTTGGCTTGACCATAAACGGAGCAGAAACCAAAAGAGCCAAAT-GGAGCCCACCTTTCCATCCCCTTGGGG-----ACAAATGCTCTCCATTTCACCCAACATCTAAAGCCCCAATTCCTAGTCT-----CCATAACTCACCAGAAAATT---C---
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5712142 165 +   6154872 TTTTTCAAAGGCGGTTTCCTGAACTGTTGGCTTGACCATAAACAGAGCAGAAACCAAAAGAGCCAAAT-GGAGCCCACCTTTCCATCCCCTTGGGG-----ACAAATGCTCTCCATTTCACCCAACATCTAAAGCCCCAATTCCTAGTCT-----CCATAACTCACCAGAAAATT---C---
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29941344 170 + 172585720 TTTTTCAAAGGCGGTTTCCTGAACTGTTGGCTTGACCATAAATGGAGCAGAAACCAAAAGAGCCAAAT-GGAGCCCACCTTTCCATCCCCTTGGAG-----ACAAATGCTCTCCATTTCACCAACCATCTCAAGCCCCAATTCCTAGTCTCTTCCCCATAACTCACCTGAAAATT---C---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29605274 170 - 170955103 TTTTTCAAAGGCGGTTTCCTGAACTGTTGGCTTGACCATAAATGGAGCAGAAACCAAAAGAGCCAAAT-GGAGCCCACCTTTCCATCCCCTTGGAG-----ACAAATGCTCTCCATTTCACCAACCATCTCAAGCCCCAATTCCTAGTCTCTTCCCCATAACTCACCTGAAAATT---C---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2604036 170 -   2996164 TTTTTCAAAGGCGGTTTCCTGAACTGTTGGCTTGACCATAAATGGAGCAGAAACCAAAAGAGCCAAAT-GGAGCCCACCGTTCCATCCCCTTGGAG-----ACAAATGCTCTCCATTTCACCAACCATCTCAAGCCCCAATTCCTAGTCTCTTACCCGTAACTCACCTGAAAATT---C---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     362668 170 +    766320 TTTTTCAAAGGCGGTTTCCTGAACGGTTGGCTTGACCATAAATGGAGCAGAAACCAAAAGAACCAAAT-GGAGCCCACCTTTCCATCCCCTTGGAG-----ACAAATGCTCTCCATTTCACCAACCATCTCAAGCCCCAATTCCTAGTCTCTTCTCCATAACTCACCTGAAAATT---C---
i cerAty1.NW_012002711v1   I 318 C 0
s chlSab2.chr17            28820457 170 -  71996105 TTTTTCAAAGGCGGTTTCCTGAACGGTTGGCTTGACCATAAATGGAGCAGAAGCCAAAAGAGCCAAAT-GGAACCCACCTTTCCATCCCCTTGGAG-----ACAAATGCTCTCCATTTCACCAACCATCTCAAGCCCCAATTCCTAGTCTCTTCCCCATAACTCACCTGAAAATT---C---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     335403 170 -    352859 TTTTTCAAAGGCGGTTTCCTGAACGGTTGGCTTGACCATAAATGGAGCAGAAACCAAAAGAACCAAAT-GGAGCCCACCTTTCCATCCCCTTGGAG-----ACAAATGCTCTCCATTTCACCAACCATCTCAAGCCCCAATTCCTAGTCTCTTCTCCATAACTCACCTGAAAATT---C---
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2431231 170 -   3067355 TTTTTCAAAAGCGGTTTCCTGAACTGTTGGCTTGATCATAAATGGAGCAGAAACCAAAAGAGCCAAAT-GGAGCCCACGTTTCTGTCCCCTTGGAG-----ACAAATGCTCTCCATTTCACCAATCATCTGAAGCCCCAATTCCTAGTCTCTTCCCCATAACTCACCTGAAAATT---C---
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     455896 170 +    730504 TTTTTCAGAGGAGG-TTCCTGAATTGTTGGCTTACCCAAAAATAGCACAGAAACCAAAAGAGCCATATGGGAACCCACCTTTCCATCCCCTTAGGG-----GCAAATGCTCTCCACTTCCCCAGGCATCTCATCCCCCAATTCCTATTCTTTTCCCCACAACTCCCCACCAAATT---C---
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2127211 171 -   2232465 TTTTTCAGGGGAGG-TTCCTGACCGGTTAACTTACCTCAAAATTGTGCAAAAACC-AAAGAGCCATTTGGGAACCCACCTTTTCATCCCCTT-GGG-----AAAAATGTTCTCCATTTCCCCAAGCATCTGTTTCCCAAATTCCCATTCTCTTCCCCACAACTCTCCACCAAATTCTCC---
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57767258 170 -  94987271 TTTTTAAAAGAA---TTCCTGCA-TGTTGGCTTGACCAAAACTGGAGCAGAAATTAAAATAGCTACAA-GAAACTTTCCTTTTTGTTCCATTAGGGGAAAAAAAAATGCTCTGCACTCCCCAAGACATCT-GACTACCAACTCCCGGTCTTTTACCAATAATTCTCCAACAAATT---C---
i mm10.chr17               I 2 I 6323
s dasNov3.JH569098           202460 142 -    254539 TTTTCCAGAGAGG--TTCCTAAGTTGTTGACTGGACCA----------------CAGTGAGTCCTAAG-GGAGCTCACCTTTCCATCCCAT---GG-----GCCAGTGATCTCCTCTCCACCAGGTATCT-----CCCAATCCCCAGCCTAATTCCCAGAACTCCT-----GGTT---CTCT
i dasNov3.JH569098         C 0 C 0
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512   0 + 173848474 C

a score=531039.000000
s hg38.chr6_GL000254v2_alt   697774 93 +   4827813 TGATTTCTCTGCAACATCCCTAAATTCCCCATTACCAACAGTGGTCCTCC----CAGGAGCCTGCCCTCAACTTTCATTCTCCAATCTACAGCCTCC
s panTro5.chr6             29671232 93 + 175400573 TGATTTCTCTGCAACATCCCTAAATTCCCCATTACCAACAGTGGTCCTCC----CAGGAGCCTGCCCTCAACTTTCATTCTCCAATCTACAGCCTCC
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5712307 93 +   6154872 TGATTTCTCTGCAGCATCCCTAAATTCCCCATTACCAACAGTGGTCCTCC----CAGGAGCCTGCCCTCAACTTTCATTCTCCAATCTACAGCCTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29941514 93 + 172585720 TAATTTCTCTGCAACATCCCTAAATTCCCCATTACCAACAGTGGTCCTCC----CAGGAGCCTGCTCTGAACTTTCATTCTCCAATTTACAGCCTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29605444 93 - 170955103 TAATTTCTCTGCAACATCCCTAAATTCCCCATTACCAACAGTGGTCCTCC----CAGGAGCCTGCTCTGAACTTTCATTCTCCAATTTACAGCCTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2604206 93 -   2996164 TAATTTCTCTGCAACATCCCTAAATTCCCCATTACCAACAGTGGTCCTCC----CAGGAGCCTGCTCTGAACTTTCATTCTCCAATTTACAGACTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     362838 93 +    766320 TAATTTCTCTGCAACATCCCTAAATTCCCCATTACCAACAGTGGTCCTCC----CAGGAGCCTGCTCTGAACTTTCATTCTCCAATTTACAGCCTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28820627 93 -  71996105 TAATTTCTCTGCAACATCCCTAAATTCCCCATTACCAACGGTGGTCCTCC----CAGGAGCCTGCTCTGAACTTTCATTCTTCAATTTACAGCCTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     335573 93 -    352859 TAATTTCTCTGCAACATCCCTAAATTCCCCATTACCAACAGTGGTCCTCC----CAGGAGCCTGCTCTGAACTTTCATTCTCCAATTTACAGCCTCC
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2431401 93 -   3067355 TAATTTCTCTGCAACATCCCTAAATTCCCCATTACCAACAGTGGTCCTCC----CAGGAGCCTGCTCTGAACTTTCATTCTCCGATTTACAGCCTCC
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     456066 96 +    730504 TAATTTCTCTACAGCATCCCT-AATTCCCCACTACCAACAATGGTCCTCCCAGAAAGAAGCTTCCTCTTAACTCTCATTCCCCAATCTGCAGTCTCC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2127382 92 -   2232465 TAATTTCTCTGCAGCATCCCT-AATTCCCCACCACCAGTAGCGGTCCTTT----GAGAAGCATGCTCTTAATTTGCATTCCCCAATTTTCAGCCTCT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           202602 90 -    254539 TCATTCTACTGCCTGGTCTTTAAATCCCCCACCTCCAATTGCAGTCCACT----CAGAAATCTGCCCTG--TTCTCACTTCCC-ACCCACAGCCTCC
i dasNov3.JH569098         C 0 I 20511
e mm10.chr17               57767428 6323 -  94987271 I
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512  0 + 173848474 C

a score=1786843.000000
s hg38.chr6_GL000254v2_alt   697867 346 +   4827813 AAATCGCCCTC--TTACCATCCCAGGCAATTGTTTCAATAGGTACCACCCTTAGTAGGGGTGTTT-TATATAGATCATCAAAATCTTGCCAATGCTGAGCCTGATTTAAGGAGAAGGAAGGTGGCGTGATGTTACAAAATGACGTTGAAATGGTTATGTAGCGTTTCAATATCCTTCCTGACCAAATTACTGCCCAACAACTTTGTCTGCCACTACTCCCTTTTTTGAAGCTTCCACAGAAATCAGGCTGATATA-TTTATTTCTCATCCCTAGGAGTGTGTTGAAGGCACTTCTGTGTCATTTATCAAACTCAGACCCTAACTTCAGCTCCACTTTCTCCCTGACCAAC
s panTro5.chr6             29671325 346 + 175400573 AAATTGCCCTC--TTACCATCCCAGGCAATTGTTTCAATAGGTACCACCCTTAGTAGGGGTGTTT-TATATAGATCATCAAAATCTTGCCAATGCTGAGCCTGATTTAAGGAGAAGGAAGGTGGCGTGATGTTACAAAATGACGTTCAAATGGTTATGTAGCGTTTCAATATCCTTCCTGACCAAATTACTGCCCAACAAATTTGTCTGCCACTACTCCCTTTTTTGAAGCTTCCACAGAAATCAGGCTGATATA-TTTATTTCTCATCCCTAGGAGTGTGTTGAAGGCACTTCTGTGTCATTTATCAAACTCAGACCCTAACTTCAGCTCCACTTTCTCCCTGACCAAC
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5712400 346 +   6154872 AAATTGCCCTC--TTACCATCCCAGGCAATTGTTTCAATAGGTACCACCCTTAGTAGGGGTGTTT-TATATAGATCATCAAAATCTTGCCAATGCTGAGCCTGATTTAAGGAGAAGGAAGGTGGCATGATGTTACAAAATGATGTTCAAATGGTTATGTAGCGTTTCAATATCCTTCCTGACCAAATTACTGCCCAAcaactttgtctgccactactcccttttttgaagcttccacagaaatcaggctgatata-tttattTCTCATCCCTAAGAGTGTGTTGAAGGCACTTCTGTGTCATTTATCAAACTCAGACCCTAACTTCAGCTCCACTTTCTCCCTGACCAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29941607 346 + 172585720 AAATTGCCCTC--TTACCATCCCAGGCAACTGTTTCAATAGGTACCACCCTTAGTAGGGGTGTTT-TATATAGGTAAGCAAAATCTTGCCAATGCTGAGCCTGATTTAAGGAGAAGGAAGCTGCCATGATGTTACAAAATGAAGTTCAAATGGTTATGTAGTGTTTCAATATCCTTCCTGACCAAACTACTGTCTGACAACTTTGTCTCCAACTACTCCCTTTTTTGAAGCTTCTACAGAAATCAGGCTGATACA-TTTATTTCTCATCCCTAGGAGTGTGTTGAAGGCACTTCTGTGTCATTTATCAAACTCAGACCCTTAATTCAGTTCCACTTTCTCCCTGACCAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29605537 346 - 170955103 AAATTGCCCTC--TTACCATCCCAGGCAACTGTTTCAATAGGTACCACCCTTAGTAGGGGTGTTT-TATATAGGTAAGCAAAATCTTGCCAATGCTGAGCCTGATTTAAGGAGAAGGAAGCTGGCATGATGTTACAAAATGAAGTTCAAATGGTTATGTAGTGTTTCAATATCCTTCCTGACCAAACTACTGTCTGACAACTTTGTCTCCAACTACTCCCTTTTTTGAAGCTTCTACAGAAATCAGGCTGATACA-TTTATTTCTCATCCCTAGGAGTGTGTTGAAGGCACTTCTGTGTCATTTATCAAACTCAGACCCTTAATTCAGTTCCACTTTCTCCCTGACCAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2604299 346 -   2996164 AAATTGCCCTC--TTACCATCCCAGGAAATTGTTTCAATAGGTACCACCCTTAGTAGGGGTGTTT-TATATAGGTAAGCAAAATCTTGCCAATGCTGAGCCTGATTTAAGGAGAAGGAAGCTGGCATGATGTTACAAAATGAAGTTCAAATGGTTATGTAGTGTTTCAATATCCTTCCTGACCAAACTACTGCCTGACAACTTTGTCTCCAACTACTCCCTTTTTTGAAGTTTCTACAGAAATCAGGCTGATACA-TTTATTTCTCATCCCTAGGAGTGTGTTGAAGGCACTTCTGTGTCATTTATCAAACTCAGACCCTTAATTCAGTTCCACTTTCTCCCTGACCAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     362931 346 +    766320 AAATTGCCCTC--TTACCATCCCAGGCAATTGTTTCAATAGGTACCACTCTTAGCAGGGGTGTTT-TATATAGGTAAGCGAAGTCTTGCCAATGCTGAGCCTGATTTAAGGAGAAGGAAGCTGGCACGATGTTACAAAATGAAGTTCAAATGGTTATGTAGTGTTTCAATATCCTTCCTGACCAAACTACTGTCTGACAACTATGTCTCCAACTACTTCCTTTTTTGAAGCTTCTACAGAAATCAGGCTGATATA-TTTATTTCTCATCCCTAGGAGTGTGTTGAAGGCACTTCTGTGTCATTTATCAAACTCAGACCCTTAATTCAGTTCCACTTTCTCCCTGACCAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28820720 346 -  71996105 AAATTGCCCTC--TTACCATCCCAGGCAATTGTTTCAATAGGTACCACCCTTAGCAGGGGTGTTT-TATATAGGTAAGCAAAGTCTTGCCAATGCTGAGCCTGATTTAAGGAGAAGGAAGCTAGCACGATGTTACAAAATGAAGTTCAAATGGTTATGTAGTGTTTCAATATCCTTCCTGACCAAACTACTGTCTGACAACTTTGTCTCCAACTACTCCCTTTTTTGAAGCTTCTACAGAAATCAGGCTGATACA-TTTATTTCTCATCCCTAGGAGTGTGTTGAAGGCACTTCTGTGTCATTTATCAAACTCAGACCCTTAATTCAGTTCCACTTTCTCCCTGACCAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     335666 346 -    352859 AAATTGCCCTC--TTACCATCCCAGGCAATTGTTTCAATAGGTACCACTCTTAGTAGGGGTGTTT-TATATAGGTAAGCAAAGTCTTGCCAATGCTGAGCCTGATTTAAGGAGAAGGAAGCTGCCATGATGTTACAAAATGAAGTTCAAATGGTTATGTAGTGTTTCAATATCCTTCCTGACCAAACTACTGTCTGACAACTGTGTCTCCAACTACTCCCTTTTTTGAAGCTTCTACAGAAATCAGGCTGATATA-TTTATTTCTCATCCCTAGGAGTGTGTTGAAGGCACTTCTGTGTCATTTATCAAACTCAGACCCTTAATTCAGTTCCACTTTCTCCCTGACCAAC
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2431494 346 -   3067355 AAATTGCCCTC--TTACCATCCCAGGCAATTGTTTCAATAGGTACCACCCTTAGTAGGGGTGTTT-TATATAGGTAAGCAAAATCTTGCCAATGCTGAGCCTGATTTAAGGAGAAGGAAGCTGGCATGATGTTACAAAATGAAGTTCAAATGGTTATGTAGTGTTTCAATATCCTTCctgaccaaactactgcctgacaactttgtctccaactactcccttttttgaagcttctacagaaatcaggctgatata-tttattTCTCATCCCTAGGAGTGTGTTGAAGGCACTTCTGTGTCATTTATCAAATTCAGACCCTTAATTCAGTTCCACTTTCTCCCTGACCAAC
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     456162 339 +    730504 AGG-----CTC--TCACCATCCCAGGCAACTGTTTCAATAGAGAACACCCTTAGTAGGGGTGTTCATACGTGGATTATCAAAGTCTTGTCAACGCTGCACCTGATTTAAGGAGAAGGAAGCCGACATGATCTTACAAAGGGAAGTTCAGATGGTTACGTGCTGTTTCAATATCCCTCGTGCCCTAATGCCTGCCTGACAACTTCATCTCTCACTACTTACTTCTTAGAACCTTCCACAGAAATCAGGCTGATCTGCTTCACTTCTCATCCCCAGGAGCGTGTTGAAGGCACTTCTTTGTCATTTATCGAACTCAGAC----CCTTCAGCTCCACTTTCTCCCTGATCAAC
i proCoq1.NW_012152574v1   C 0 I 8284
s otoGar3.GL873742          2127474 342 -   2232465 AAA-----CTCTTTTATCATCCCAGGTAACTATTTCAATAATGACCACCC-TAGCAGGGATGTTTATAAAGCAATTCTCAAAGTCTTATAAACTCTGAGCCTGATTTAAGGAAAAGGAAGTTGACATGGTCTTATAAATGGAAATTTAAATGATT--GTGGTGTTTCAGTATTCTTCATGCCTTAATACCTGCCTGACAACTTCGTCTCCCACTACTTCTTTCCTTGAAACTTTCACATAAATCAGGCTGATCTACTTCACTTCTCATCCCCAGGACTATATTTAAGGCACTTCTCTGTCATTTATCAAACTCAGGCACTTACTTCAGTCCCACTTTCTCACTGACCAAC
i otoGar3.GL873742         C 0 C 0
e mm10.chr17               57767428 6323 -  94987271 I
e dasNov3.JH569098           202692 20511 -    254539 I
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512   0 + 173848474 C

a score=1538168.000000
s hg38.chr6_GL000254v2_alt   698213 366 +   4827813 -----------CGAGAACACTTTTTCTCTGAACTACGTTGTCTACTATCTGTAGTTCACAGTAAATGCCACCCTA----------------------TTTTTTCTTGGCA-GCAGGAGGGGTTCTCTT-AATCGTTTATTTTTTTCATCAAACAGCAGCATATGCTAAAAGGTAAGTATATGTGTCTTGAAAAGAAAACTTTTGGAAAAATGTAGCA------TTTTTTAGTTAGCCTACATTATTATGAtttttaattgacaaattaaaattgtatatatttatgatgtataacatgatgttttgacatatgtatacatcatggaatgacaaaatcaagctaatttacatgaaccattacctcacatacttatcatgtttttgtgatgagaacac----tcagatctact
s panTro5.chr6             29671671 366 + 175400573 -----------TGAGAACACTTTTTCTCTGAACTACTTTGTCTACTGTCTGTAGTTCACAGTAAATGCCACCCTA----------------------TTTTTTCTTGGCA-GCAGGAGGGGTTCTCTT-AATCGTTTATTTTTTTCATCAAACAGCAGCATATGCTAAACGGTAAGTATATGTGTCTTGAAAAGAAAACTTTTGGAAAAATGTAGCA------TTTTTTAGTTAGCCTACATTATTATGAtttttaattgacaaattaaaattgtatatatttatgatgtataacatgatgttttgacatatgtatacattatggaatgacaaaatcaagctaatttacatgaaccattacctcacatacttatcatgtttttgtgatgagaacac----tcagatctact
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5712746 366 +   6154872 -----------CGAGAACACTTTTTCTCTGAACTACTTTGTCTACTGTCTGTAGTTCACAGTAAATGCCACCCTA----------------------TTTTTTCTTGGCA-GCAGGAGGGGTTCTCTT-AATCGTTTATTTTTTTCATCAAACAGCAGCATATGCTAAAAGGTAAGTATATGTGTCTTGAAAAGAAAACTTTTGGAAAAATGTAGCA------TTTTTTAGTTAGCCTACATTATTATGAtttttaattgacaaattaaaattgtatatatttatgatgtataacatgatgttttgacatatgtatacattacggaatgacaaaatcaagctaatttacatgaaccattacctcacatacttatcgtgtttttgtgatgagaacac----tcagatctact
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29941953 367 + 172585720 -----------AGAGAACACTTTTTCTCTGAACTACTCTGTCTACTGTCTGTAGCTCACAGTAAATGCCACCCTA----------------------TTTTTTCTTGGCAGGCAGGAGGGGTTCTCTT-AATCATTTATTTTTTTCATCAAACTGCAGCATATGCTAAAAGGAAAGTGTATGTGTCTTGAAAACAAAACTTTCAGAAAAATTTAGTA------TTTTTTAGTTAGCCTAAGTTATTATGAtttttaattgacaacttaaaactgtatatatttatgatgtataacatgatgttttgatatacgtatacattatggaatgacaaaatcaagctaatttacatgagccattacctcacatacttaccatgtttttgtgatgagaacac----tcaaatctact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29605883 367 - 170955103 -----------AGAGAACACTTTTTCTCTGAACTACTCTGTCTACTGTCTGTAGCTCACAGTAAATGCCACCCTA----------------------TTTTTTCTTGGCAGGCAGGAGGGGTTCTCTT-AATCATTTATTTTTTTCATCAAACTGCAGCATATGCTAAAAGGAAAGTGTATGTGTCTTGAAAACAAAACTTTCAGAAAAATTTAGTA------TTTTTTAGTTAGCCTAAGTTATTATGAtttttaattgacaacttaaaactgtatatatttatgatgtataacatgatgttttgatatatgtatacattatggaatgacaaaatcaagctaatttacatgagccattacctcacatacttaccatgtttttgtgatgagaacac----tcaaatctact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2604645 367 -   2996164 -----------AGAGAACACTTTTTCTCTGAACTACTCTGTCTACTGTCTGTAGCTCACAGTAAATGCCACCCTA----------------------TTTTTTCTTGGCAGGTAGGAGGGGTTCTCTT-AATCATTTATTTTTTTCATCAAACTGCAGCATATGCTAAAAGGAAAGTGTATGTGTCTTGAAAACAAAACTTTCAGAAAAATTTAGTA------TTTTTTAGTTAGCCTAAGTTATTATGAtttttaattgacaacttaaaactgtatatatttatgatgtataacatgatgttttgatatatgtatacattatggaatgacaaaatcaagctaatttacatgagccattacctcacatacttaccatgtttttgtgatgagaacac----tcaaatctact
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     363277 367 +    766320 -----------AGAGAACACTTTTTCTCTGAACTACTCTGTCTACTGTCTGTAGCTCACAGTAAATGCTACCCTA----------------------TTTTTTCTTGGCAGGCAGGAGGGGTTCTCTT-AATCATTTATTTTTTTCATCAAACTGCAGCATATGCTAAAAGGAAAGTGTATGTGCCTTGAAAACAAAACTTTCAGAAAAATTTAGTA------TTTTTTAGTTAGCCTAAGTTATTATGACttttaattgacagcttaaaactgtatatatttatgatgtataacatgatgttttgatatatgtatacactatggaatgacaaaatcaagctaatttacatgagccattacctcacatacttaccatgtttttgtgatgagaacac----tcaaatctact
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28821066 367 -  71996105 -----------AGAGAACACTTTTTCTCTGAACTACTCTGTCTACTGTCTGTAGCTCACAGTAAATGCCACCCTA----------------------TTTTTTCTTGGCAGGCAGGAGGGGTTCTCTT-AATCATTTATTTTTTTCATCAAACTGCAGCATATGCTAAAAGGAAAGTGTATGTGTCTTGAAAACAAAACTTTCAGAAAAATTTAGTA------TTTTTTAGTTAGCCTAAGTTATTATGACttttaattgacagcttaaaactgtatatatttatgatgtataacatgatgttttgatatatgtatacattatggaaagacaaaatcaagctaatttacatgagccattacctcacatacttaccatgtttttgtgatgagaacac----tcaaatctact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     336012 367 -    352859 -----------AGAGAACACTTTTTCTCTGAACTGCTCTGTCTACTGTCTGTAGCTCACAGTAAATGCCACCCTA----------------------TTTTTTCTTGGCAGGCAGGAGGGGTTCTCTT-AATCATTTATTTTTTTCATCAAACTGCAGCATATGCTAAAAGGAAAGTGTATGTGTCTTGAAAACAAAACTTTCAGAAAAATTTAGTA------TTTTTTAGTTAGCCTAAGTTATTATGACttttaattgacagcttaaaactgtatatatttatgatgtataacatgatgttttgatatatgtatacattatggaatgacaaaatcaagctaatttacatgagccattacctcacatacttaccatgtttttgtgatgagaacac----tcaaatctact
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2431840 367 -   3067355 -----------AGAGAACACTTTTTCTCTGAACTACTCTGTCTACTGTCTGTAGCTCACAGTAAATGCCACCCTA----------------------TTTTCTCTTGGCAGGCAGGAGGGGCTCTCTT-AATCATTTTTTTTTTTCATCAAACTGCAGCATATGCTAAAAGGAAAGTGTATGTGTCTTGAAAACAAAACTTTCAGAAAAATGTAGTA------TTTTTTAGTTAGCCTAAGTTATTATGAtttttaattgacaacttaaaactgtatatatttatgatgtataacatgatgttttgatatatgtatacattatggaatgacaaaatcaagctaatttacatgagccattacctcacatacttaccatgtttttatgatgagaacac----tcaaatctact
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2127816 367 -   2232465 ATAACAACAGAGGAAAAAATCTTATCT----ACTG-TATGTCTACTGTCCATATGCCACAGAAAGTGCCAACATGTTTCCTCTCTCttttttttttttttttttttGGTG---GGGAAGTCTTTTCTTAAATTATTTA-----TTCATCAAACTATAGC-TATAATAAAAGGCAAAGGTATGTGTCCTAAAAACAAAATTTCTGG----ATGTGGCATAGCTTTTTTTTAATTAGCCCAAG---TTATAAtttttaattgcaaa----------tacatgtttatggtgtgtaac---atgttttgacat--gtatatattgtggaatggctaaatcaacctaattaatata---tgttacctc----acttctcat-tttttgtggtgagGGTGTTATATCACATTTACT
i otoGar3.GL873742         C 0 I 18754
e mm10.chr17               57767428 6323 -  94987271 I
e dasNov3.JH569098           202692 20511 -    254539 I
e proCoq1.NW_012152574v1     456501 8284 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e panPan2.chr6             29904512   0 + 173848474 C

a score=6590414.000000
s hg38.chr6_GL000254v2_alt   698579 1727 +   4827813 cttttagcaattttcacatatacaattcattaattatagtcaccctttcatataatagatctcttgaattatctctcttgtctaactgtaatttttgtaacctttgaccaatatcttctcaattttctccctttcttccag--cccctggtaaccaccattctattctctgtttctgtgagtttgactttgtagatttcatgtagaagggagaccatgaggtatttgtccttctgtgcctgacttatttcagttaatataaggtcctccagattcatccatgttgttgcaaacaacagaatttccttcttctttaaggctgaatagtattccactatgcatatataccacattttctctatccattcatctgctgagggatgcttaggtttattccacatcttggctattgtgaataatactacaatgaacatgaaagtgtagatctctct------------tcttatttcctttgaatatatacacagacaagggattg--ctgggtcatacaacggttctatttttaattttttcagaatttttcagaaacctccacagtgtatttaatgactgtactaatttacgcttccaccaaaagtgtat--gagttctccttttccacattttcatcaacatttatctcttatcttttctgtagtaggcattctaacaagtgtgaggtgatatcttattgtgaatttaatttgtatttccctgatgactagtgatgttgagcattttttcttgtacctgtttgtcatttgtacgtcttcttttgagaaatgtctattcaggtgcttagctcattttaaaattgagttatttgtttccttgttattgatttgtttaagttccttatatagcttgaattttagccacttacatgtatcatttacaaatattttctctcaacctgtgggttgtcttttcactctattgtttcctttgctgcggagaaatgttttaatttgatgcaatcccatttgtttacttttggttttgctgtctgtgatttgaggatcatatacaagaaatcttgcccataccaacgtcatggaacttttctcctatattttcttctaatagttttacagtttgcagtcatatgtttaagtcattaatccattttgagttaattctcatatattgagtgtcataaggatccaatttcattcttctgcatgtggatattcag-ttttccaacatcatttattaaaaagacttttctttcaccgtttcatgttctgtttatatgatcatatggttttatctttaattctgttaatgttatgtatcacatttattgatttgtgtgttgaaccatccttgcatctcagagctaaatctcacttgatcatggtgaaagatccttttagtatactgttaaatttggtttgatagAGAAACACAACTTCAGAGATAATTCAAGTTTAAGATGGGAAAGTCTGACTAATCTTAATTCTTACAGATATTTTAGCAAACTTTTTGTCAAAATACATTTTATGGACTTTTTAAggtcatcagttcagaccacagtcccatggataaagacaaggatctgtggggagtagatg-tttgtattgttaatcaccctggtgagaggttaatcctggggtataaatgaagtctccaaaagtaggtgatatattagcatgaaaaatacatttctaccttcccttgtgtcctggggtcaatttggcctaaactgcaagacgtgaaaaGATTATAAGTAGTTCCAAAT
s panTro5.chr6             29672037 1728 + 175400573 cttttagcaattttcacatatacaattcattaattatagtcaccctttcatataatagatctcttgaattatctctcttgtctaactgtaatttttgtaacctttgaccaatatcttctcaattttctccctttcttccag--cccctggtaaccaccactctattctctgtttctatgagtttgactttgtagatttcatgtagaagggagaccatgaggtatttgtctttctgtgcctaacttatttcacttaacataaggtcctccagattcatccatgttgttgcaaacaacagaatttccttcttctttaaggctgaatagtattccactatgcatatataccatattttctctatccattcatctgctgatggatgcttaggtttattccacatcttggctattgtgaataatactacaatgaacatgaaagtgtagatctctct------------tcttatttcctttgaatatgtacacagacaagggattg--ctgggtcatacaacggttctatttttaattttttcagaatttttcagaaacctccacagtgtatttaatgactgtactaatttacgcttccaccaaaagtgtac--gagttctccttttccacattttcatcaacatttatctcttatcttttctgtagtaggtattctaacaagtgtgaggtgatatcttattgtgaatttaatttgtatttccctgatgactagtgatgttgagtattttttcttgtacctgtttgtcatttgtatgtcttcttttgagaaatgtctattcaggtgcttagctcattttaaaattgagttatttgtttccttgttattgatttgtttaagttccttatatagcttgaattttagccacttacatgtatcatttacaaatattttctctcaacctgtgggttgtcttttcactctattgtttcctttgctgcggagaaatgttttaatttgatgcaatcccatttgtttacttttggttttgctgtctgtgatttgaggatcatatacaagaaatcttgcccataccaatgtcatggaacttttctcctatattttcttctaatagttttacagtttgcagtcatatgtttaagtcattaatccattttgagttaattctcatatattgagtgtcataaggatccaatttcattcttctgcatgtggatattcagtttttccaacatcatttattaaaaagacttttctttcaccatttcatgttctgtttatatgatcatatggttttatccttaattctgttaatgttatgtatcacatttattgatttgtgtgttgaaccatccttgcatctcagagctaaatctcacttgatcgtggtgaaagatcctttcagtatactgttaaacttggtttgatagAGAAACACAGCTTCAGAGATAATTCAAGTTTAAGATGGGAAAGTCTGACTAATCTTAATTTTTAGAGATATTTTAGCAAACTTTTTGTCAAAATACATTTTATGGACTTTTTAAGGTCATCAGTTcagaccacagtctcatggataaagacaaggatctgtggggagtagatg-tttgtattgttaatcaccctggtgagaagttaatcctggggtataaatgaagtctccaaaagtaggtgctatattagcatgaaaaatacatttctaccttcctttgtgtcctggggtcaatttggcctaaactgcaagatgtgaaaaGATTATAAGTAGTTCCAAAT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5713112 1725 +   6154872 cttttagcaattttcacatatacaattcattaattatagtcaccctttcatataatagatctcttgaattatctctcttgtctaactgtaatttttgtaacctttggccaatatcttctcaattttctccctttcttccag--cccctggtaaccaccactctattctctgtttctatgagtttgactttgtagatttcatgtagaagggagaccatgaggtatttgtctttctgtgcctgacttatttcacttaacataaggtcctccagattcatccatgttgttgcaaacaacagaatttccttcttctttaaggctgaatagtattccactatgcatatataccacattttctctatccattcatctgctgatggatgcttaggtttattccacatcttggctattatgaataatactacaatgaacatgaaagtgtagatctctct------------tcttatttcctttgaatatatacacagacaagggattg--ctgggtcatacaacggttctattttt-attttttcagaatttttcagaaacctccacagtgtatttaatgactgtactaatttacgcttccaccaaaagtgtat--gagttctccttttccacattttcatcaacatttatctcttatcttttctgtagtaggtattctaacaagtgtgaggtgatatcttattgtgaatttaatttgtatttccctgatgactagtgatgttgagcattttttcttgtacctgtttgtcatttgtatgtcttc-tttgagaaatgtctattcaggtgcttagctcattttaaaattgagttatttg-ttccttgttattgatttgtttaagttccttatatagcttgaattttagccacttacatgtatcatttacaaatattttctctcaacctgtgggttgtcttttcactctattgtttcctttgctgcggagaaatgttttaatttgatgcaatcccatttgtttacttttggttttgctgtctgtgatttgaggatcatatacaagaaatcttgcccataccaatgtcatggaacttttctcctatattttcttctaatagttttacagtttgcagtcatatgtttaagtcattaatccattttgagttaattctcatatattgagtgtcataaggatccaatttcattcttctgcatgtggatattcagtttttccaacatcatttattaaaaagacttttcttccaccatttcatgttctgtttatatgatcatatggttttatccttaattctgttaatgttatgtatcacatttattgatttgtgtgttgaaccatccttgcatctcagagctaaatctcacttgatcgtggtgaaagatcctttcagtatactgttaaatttggtttgatagAGAAACACAACTTCAGAGATAATTCAAGTTTAAGATGGGAAAGTCTGACTAATCTTAATTTTTAGAGATATTTTAGCAAACTTTTTGTCAAAATACATTTTATGGACTTTTTAAggtcatcagttcagaccacagtctcatggataaagacaaggatctgtggggagtagatg-tttgtattgttaattaccctggtgagaggttagtcctggggtataaatggagtctccaaaagtaggtgctatattagcatgaaaaatacatttctaccttcctttgtgtcctggggtcaatttggcctaaactgcaagatgtgaaaaGATTATAAGTAGTTCCAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29942320 1729 + 172585720 cttttagcaatttttacatatacaattctttaactacagtcacgctttcata-----------ctgaattatccctcctgcctaactgtaatttttgtaacctttgaccaatattttctcaattctctccctttctgccaa--cccctggtaaccaccattctactctctgtttc--tgagtttgacttttt-gatttcatatataagggagatcatgcggtatttgtctttctgtgcctgacttatttcacttaacataaagccctctagattcacccatgttgttgcaaacaacagaatttccttcttctttgaggctgaatagtattccactatgcatatataccacattttctctatccattcatctgttgatggatgcttaggtttactccatgtcttggttattgtgaataatactacatggaacatgaaagtgtagatatctcctcaagatactaatcttatttcctttggatacatacacagacaagggatgagtctgtgtcatatgataattctatttttaattttttcagaattttccagaaacctccacagtgtatttaatgaccgtactaatttactcttccaccaaaagtgtataagagttctccttttccaaattctcatcaacacttatctttcatcttttctttaacaggcattctaacaagtgtgaggtgatatctcatcgtgaatttaatttgtatttccctgatgactagtgaggttgagcattttttcacgtacctgtttgtcatttgtatgtcttctttagagaaatgtctattcaggtgctttgctcattttaaaattgatttatttgttttcttgttattgatttgtttgaattccttatataacttgaacactagccacttccgtgtatcatttacaaatatcttctctcaacctgtgggttgtcttttcactctgttgtttcctttgttgtggagaaatgttttaatttgatgcaatcccatttgtttacttttggttttgttgtctatgatttgaggatcatatagaaggaattgtgcccagaccaatgtcatggaacatttctcctatattatcttctaatagttttacagtttacagtcatatgtttaagtcattcgtccattttgagttaattcttatatattgagtgtcataagggtccgatttcattcttctgcatgtggatattcagtttttccaaaatcatttattaaaaagacttttctttcaccattttgtgttctatttatatgatcatatggttttatccttcattctgttaatgttgtatatcacatttaacgatttgtgtgttgaaccatccttgcatctcaaagctgaatctcacttgatcatggtgaaagatcctttcaatatactgttgaattcggtttgatagACAAACACAACTTCAGAGAGAATTCAAGTTTAAGATGGGAACATCTGACTAACCTTAATTTTTAGAGAATTTTTAGCAAACTTTTTGTCAAAATACTTTTTATGAACTTTTTAAGGTTATCAGTccagaccgcattcccatggataaagacaaagatctgtggggagtagatg-tttgtattgttaatcaccc-ggtgagagattaatcctggggtacaaatgaggtctccaaaagtaggtgctatattagcatgaaaaatacatttctaccttcctttgtgtcctgggatcaatttggcctaaactGAAACATGTGAAAAGATTACAAGCAGTTCTAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29606250 1729 - 170955103 cttttagcaatttttacatatacaattctttaagtacagtcacgctttcata-----------ctgaattatccttcctgcctaactgtaatttttgtaatctttgaccaatattttctcaattctctccctttctgccaa--cccctggtaaccaccattctactctctgtttc--tgagtttgacttttt-gatttcatatataagggagatcatgcggtatttgtctttctgtgcctgacttatttcacttaacataaagccctctagattcacccatgttgttgcaaacaacagaatttccttcttctttgaggctgaatagtattccactatgcatatataccacattttctctatccattcatctgttgatggatgcttaggtttactccatgtcttggttattgtgaataatactacaattaacatgaaagtgtagatatctcctcaagatactaatcttatttcctttggatacatacacagacaagggatgagtctgtgtcatatgataattctatttttaattttttcagaatttttcagaaacctccacagtgtatttaatgaccgtactaatttactcttccaccaaaagtgtataagagttctccttttccaaattctcatcaacacttatctttcatcttttctttaacaggcattctaacaagtgtgaggtgatatctcatcgtgaatttaatttgtatttccctgatgactagtgaggttgagcattttttcacgtacctgtttgtcatttgtatgtcttctttagagaaatgtctattcaggtgctttgctcattttaaaattgatttatttgttttcttgttattgatttgtttgaattccttatataacttgaacactagccacttccgtgtatcatttacaaatatcttctctcaacctgtgggttgtcttttcactctgttgtttcctttgttgtggagaaatgttttaatttgatgcaatcccatttgtttacttttggttttgttgtctatgatttgaggatcatatagaaggaattgtgcccagaccaatgtcatggaacatttctcctatattatcttctaatagttttacagtttacagtcatatgtttaagtcattcgtccattttgagttaattcttatatattgagtgtcataagggtccaatttcattcttctgcatgtggatattcagtttttccaaaatcatttattaaaaagacttttctttcaccattttgtgttctatttatatgatcatatggttttatccttcattctgttaatgttgtatatcacatttaatgatttgtgtgttgaaccatccttgcatctcaaagctgaatctcacttgatcatggtgaaagatcctttcaatatactgttgaattcggtttgatagACAAACACAACTTCAGAGAGAATTCAAGTTTAAGATGGGAACATCTGACTAACCTTAATTTTTAGAGAATTTTTAGCAAACTTTTTGTCAAAATACTTTTTATGAACTTTTTAAGGTTATCAGTccagaccgcattcccatggataaagacaaagatctgtggggagtagatg-tttgtattgttaatcaccc-ggtgagagattaatcctggggtacaaatgaggtctccaaaagtaggtgctatattagcatgaaaaatacatttctaccttcctttgtgtcctgggatcaatttggcctaaactGAAACATGTGAAAAGATTACAAGCAGTTCTAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2605012 1729 -   2996164 cttttagcaatttttacatatacaattctttaagtacagtcacgctttcatg-----------ctgaattatccttcctgcctaactgtaatttttgtaacctttgaccaatattttctcaattctctccctttctgccaa--cccctggtaaccaccattctactctctgtttc--tgagtttgacttttt-gatttcatatataagggagatcatgcggtatttgtctttctgtgcctgacttatttcacttaacataaagccctctagattcacccatgttattgcaaacaacagaatttccttcttctttgaggctgaatagtattccactacacatatataccacattttctctatccattcatctgttgatggatgcttaggtttactccatgtcttggttattgtgaataatactacaattaacatgaaagtgtagatatctcctcaagatactaatcttatttcctttggatacatacacagacaagggatgagtctgtgtcatatgataattctatttttaattttttcagaatttttcagaaacctccacagtgtatttaatgactgtactaatttactcttccaccaaaagtgtataagagttctccttttccaaattctcatcaacacttatctttcatcttttctgtagcaggcattctaacaagtgtgaggtgatatctcatcgtgaatttaatttgtatttccctgatgactagtgaggttgagcattttttcacgtacctgtttgtcatttgtatgtcttctttagagaaatgtctattcaggtgctttgctcattttaaaattgatttatttgttttcttgttattgatttgtttgaattccttatataacttgaacgctagccacttccgtgtatcatttacaaatatcttctctcaacctgtgggttgtcttttcactctgttgtttcttttgttgtggagaaatgttttaatttgatgcaatcccatttgtttacttttggttttgttgtctatgatttgaggatcatatagaaggaattgtgcccagaccaatgtcatggaacatttctcctatattatcttctaatagttttacagtttacagtcatatgtttaagtcattcgtccattttgagttaattcttatatattgagtgtcataagggtccgatttcattcttctgcatgtggatattcagtttttccaacatcatttattaaaaagacttttctttcaccattttgtgttctatttatatgatcatatggttttatccttcattctgttaatgttgtatatcacatttaatgatttgtgtgttgaaccatccttgcatctcaaagctgaatctcacttgatcatggtgaaagatcctttcaatatactgttgaatttggtttgatagACAAACACAACTTCAGAGAGAATTCAAGTTTAAGATGGGAACATCTGACTAACCTTAATTTTTAGAGATTTTTTAGCAAACTTTTCGTCAAAATACTTTTTATGAACTTTTTAAGGTTATCAGTccagaccacattcccatggataaagacaaagatctgtggggagtagatg-tttgtattgttaatcaccc-ggtgagaggttaatcctggggtacaaatgaggtctccaaaagtaggtgctatattagcatgaaaaatacatttctaccttcctttgtgtcctgggatcaatttggcctaaactGAAACATGTGAAAAGATTACAAGCAGTTCTAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     363644 1727 +    766320 cttttagcaatttttacatatacaattctttaactatagtcacgctttcata-----------ctgaattatccctcctgcctaactgtaatttttgtaacctttgaccaatgttttctcaattctctccctttctgccaacccccctggtaaccaccattctactctctgtttc--tgagtttgacttttt-gatttcatatataaggaagatcatgcggtatttgtctttctctgcctgacttatttcacttaacataaagccctctagattcacccatgttgttgcaaacaacagaatttccttcttctttgaggcagaatagtattccactatgcatatataccacattttctctatccattcatcttttgatggatgcttaggtttactccatgtcttggttattgtgaataatactacaatgaacatgaaagtgtagataccccctcaagatactaatcttatttcctttggatacatacatagacaagggattg--ctaagtcatatgataattctatttttaattttttcagaatttttcagaaacctccacagtgtatttaatgactgtactaatttactcttccaccaaaagtgtataagagttctccttttccacattctcatcaacacttatctttcatcttttctataacaggcactctaacaagtgtgaggtgatatctcatcgtgaatttaatttgtatttccctgatgactagtgaggttgagcattttttcaagtacctgtttgtcatttgtatgtcttctttagagaaatgtctattcaggtgctttgctcgttttaaaattgatttatttgttttcttgttattgatttgtttgaattccttatataacttgaatatcagccacttccatgtatcatttacaaatattttctctcaacctgtgggttgtcttttcactctattgtttcctttgttgtggagaaatgttttaatttgatgcaatcccatttgtttacttttggttttgttgtctgtgatttgaggatcatatagaagaaatcttgcccagaccaatgtcatggaacatttctcctatattatcttctaatagttttacagtttccagtcatatgtttaagtcattaatccattttgagttaattcttatatattgaatgtcataagggcccaatttcattcttctgcatgtggatattcagtttttccaacatcatttattaaaaagacttt--tttcaccattttgtgttctatttatatgatcatatggttttatccttcattctgttaatgttgtatatcacatttaatgatttgtgtgttgaaccatccttgcatctcaaagctaaatctcacttgatcctggtgaaagatcctttcaatatactattgaatttggtttgatagACAAACACAATCTCAGAGAGAATTCAAGTTTAAGATGGGAACGTCTGACTAACCTTAATTTTTAGAGATTTTTTAGCAAACTTTTTGTCAAAATACTTTTTATGAACTTTTTAAGGTCGTCAGTccagaccgcattcccatggataaagacaaagatctgtggggagtagatg-tttgtattgttaatcatcc-ggtgagaggttaatcctggagtacaaatgaggtctccaaaagtaggtgctatattagcatgaaaaatacatttctaccttcctttgtgtcctggggtcaatttggcctaaactGAAACATGTGAAAAGATTATAAGCAGTTCCAAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28821433 1725 -  71996105 cttttagcaatttttacatatacaattctttaactacagtcacgctttcata-----------ctgaattatccctcctgcctaactgtaatttttgtaacctttgaccaatattttctcaattctctccctttctgccaa--cccctggtaaccaccattctactctctgtttc--tgagtttgacttttt-gatttcacatataaggaagatcatgcagtatttgtctttctgtgcctgacttatttcacttaacataaagccctctagattcatccatgttgttgcaaacaacagaatttccttcttctttgaggctgaatagtattccactatgcatatataccacattttctctatccattcatcttttgatggatgcttaggtttactccatgtcgtggttattgtgaataatactacaatgaacatgaaagtgtagatatcccctcaagatactaatcttatttcctttggatacatacatagacaagggattg--ctaagtcatatgataattctacttttaattttttcagaatttttcagaaacctccacagtgtatttaatgactgtactaatttactcttccaccaaaagtgtataagagttctccttttccacattctcatcaacacttatctttcatcttttctataacaggcactctaacaagtgtgaggtgatatctcattgtgaatttaatttgtatttccctgatgactagtgaggttgagcattttttcaagtacctgtttgtcatttgtatgtcttctttagagaaatgtctattcaggtgctttgctcgttttaaaattgatttatttgttttcttgttattgatttgtttgaattccttatataacttgaatatcagccacttccatgtatcatttacaaatattttctctcaacctgtgggttgtcttttcactctattgtttcctttgttgtggagaaatgttttaatttgatgcaatcccatttgtttacttttggttttgttgtctgtgatttgaggatcatatagaagaaatcttgcccagaccaatgtcatggaacatttctcctatattatcttctaatagttttacagtttccagtcatatgtttaagtcattaatcgattttgagttaattcttatatattgagtgtcataagggtccaatttcattcttctgcatgtggatattcagtttttccaacataatttattaaaaagacttt--tttcaccattttgtgttctatttatatgatcatatggttttatccttcattctgttaatgttgtatatcacatataatgatttgtgtgttgaaccatccttgcatctcaaagctaaatctcacttgatcatggtgaaagatcctttcaatatactattgaatttggtttgatagACAAACACAACCTCAGAGAGAATTCAAGTTTAAGATGGGAACGTCTGACTAACCTTAATTTTTAGAGATTTTTTAGCAAACTTTTTGTCAAAATACTTTTTATGAACTTTTTAAGGTCGTCAGTccagaccacattcccatggataaagacaaagatctgtggggagtagatg-tttgtattgttaatcaccc-ggtgagaggttaatcctggagtacaaatgaggtctccaaaagtaggtgctatattagcatgaaaaatacatttctaccttcctttgtgtcctggggtcaatttggcctaaactGAAACATGTGAAAAGATTATAAGCAGTTCCAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     336379 1726 -    352859 cttttagcaatttttacatatacaattctttaactatagtcatgctttcata-----------ctgaattatccctcctgcctaactgtaatttttgtaacctttgaccaatattttctcaattctctccctttctgccaa--cccctggtaaccaccattctactctctgtttc--tgagtttgacttttt-gatttcatatataaggaagatcatgcggtatttgtctttctgtgcctgacttatttcacttaacataaagccctctagattcatccatgttgttgcaaacaacagaatttccttcttctttgaggctgaatagtattccactatgcatatataccacattttctctattcattcatcttttgatggatgcttaggtttactccatgtcttggttattgtgaataatactacaatgaacatgaaagtgtagataccccctcaagatactaatcttatttcctttggatacatacatagacaagggattg--ctaagtcatatgataattctatttttaattttttcagaatttttcagaaacctccacagtgtatttaatgactgtactaatttattcttccaccaaaagtgtataagagttctccttttccacattctcatcaacacttatctttcatcttttctataacaggcactctaacaagtgtgaggtgatatctcatcgtgaatttaatttgtatttccctgatgactagtgaggttgagcattttttcaagtacctgtttgtcatttgtatgtcttctttagagaaatgtctattcaggtgctttgctcgttttaaaattgatttatttgttttcttgttattgatttgtttgaattccttatataacttgaatatcagccacttccatgtatcatttacaaatattttctctcaacctgtgggttgtcttttcactctattgtttcctttgttgtggagaaatgttttaatttgatgcaatcccatttgtttacttttggttttgttgtctgtgatttgaggatcatatagaagaaatcttgcccagaccaatgtcatggaacatttctcctatattatcttctaatagttttacagtttccagtcatatgtttaagtcattaatccattttgagttaattcttatatattgaatgtcataagggcccaatttcattcttctgcatgtggatattcagtttttccaacatcatttattaaaaagacttt--tttcaccattttgtgttctatttatatgatcatatggttttatccttcattctgttaatgttgtatatcacatttaatgatttgtgtgttgaaccatccttgcacctcaaagctaaatctcacttgatcctggtgaaagatcctttcaatatactattgaatttggtttgatagACAAACACAACCTCAGAGAGAATTCAAGTTTAAGATGGGAACGTCTGACTAACCTTAATTTTTAGAGATTTTTTAGCAAACTTTTTGTCAAAATACTTTTTATGAACTTTTTAAGGTCGTCAGTccagaccgcattcccatgaataaagacaaagatctgtggggagtagatgttttgtattgttaatcatcc-ggtgagaggttaatcctggagtacaaatgaggtctccaaaagtaggtgctatattagcatgaaaaatacatttctaccttcctttgtgtcctggggtcaatttggcctaaactGAAACATGTGAAAAGATTATAAGCAGTTCCAAAT
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2432207 1727 -   3067355 cttttagcaatttttacacatacaattctttaactacagtcaccctttcata-----------ctgaattatccctcctgcctaactgtaatttttgtaacctttgaccaatattttctcaattctctccctttctgccaa--cccctggtaaccaccattctactctttgtttc--tgagtttgacttttt-gatttcatatataaggaagatcatgcggtatttgtctttctgtacctcacttatttcacttaacataaggccccctagattcatccatgttgttgcaaacaacagaatttccttcttctttgaggctgaatagtattccactatgcatatatgccacattttctctatccattcatctgttgatggatgcttaggtttactccatgtcttggttattgtgaataatactacaatgaacatgaaagtgtagatatctcctcaagatcctaatcttatttcctttggatacatacacagacaagggattg--ctgagtcatatgataattctatttttaattttttcagaatttttcagaaacctccacagtgtatttaatgactctactaatttactcttccaccaaaagtgtataagagttctccttttccacattctcatcaacacttatctttcatcttttctataacaggcattctaacaagtgtgaggtgatatctcatcatgaatttaatttgtatttccctgatgactagtgaggttgagcatattttcacgtacctgtttatcatttgtatgtcttctttagagaaatatctattcaggtgctttgctcgttttaaaattgatttatttgttttcttgttattgatttgtttgaattccttatgtaacttgaatattagccacttccatgtatcatttacaaatattttctctcaacctgtgggttgtcttttcactctattgtttcctttgttgtggagaaatgttttaatttgatgcaatcccatttgtttacttttggttttgttgtctgtgatttgaggatcatatagaagaaatcttgcccagaccaatgtcatggaacatttctcctatattatcttctaatagttttacagttttcagtcatatgtttaagtcattaatccattttgagttaattcttatatattgagtgtcataagggtccaatttcattcttctgcatgtggatattcagtttttccaacatcagttattaaaaagacttttctttcaccattttgtgttctatttatatgatcatatggttttatccttcattctgttaatgttgtatatcacatttaatgatttgtgtgttgaaccatccttgcatctcaaagctaaatctcacttaatcatggtgaaagatcctttcagtatactgttgaatttggtttgatagACAAACACAACTTCAGAGAGAATTCAAGTGTAAGATGGGAATATCTGACTAACCTTAATTTTTAGAGATTTTTTAGCAAACTTTTTGTCAAAATACTTTTTGTGAACTTTTTAAggtcatcagtccagaccgcattcccacggataaagacaaagatctgtggggagtagatg-tttgtattgttaatcacct-ggtgagaggttaatcctggggtacaaatgaggtctccaaaagtagatgctatattagcatgaaaaatacatttctaccttcctttgtgtcctggggtcaatttggcctAAAGTGAAACATGTGAAAAGATTATAAGCAGTTCCAAAT
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57767428 6323 -  94987271 I
e dasNov3.JH569098           202692 20511 -    254539 I
e proCoq1.NW_012152574v1     456501 8284 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2128183 18754 -   2232465 I
e panPan2.chr6             29904512    0 + 173848474 C

a score=908869.000000
s hg38.chr6_GL000254v2_alt   700306 192 +   4827813 GAAATGAAATATACCCTTGGCCACATAAATTACCTAGTGGAATTCAAGTGTGTGTGGATCAGTATAACAGCATATAattctctgcactacatttactttccactaagttagaactacagtaaattattctataagctacaacttgatatatgttgtactaggagaattctaagagggcctgtggccttgctt
s panTro5.chr6             29673765 192 + 175400573 GAAATGAAATATACCCTTGGCCACATAAATTACCTAGTGGAATTCAAGTGTCTGTGGATCAGTATAACAGCATATAattctctgcactacatttactttccactaagttagaactacagtaaattattctataagctacaacttgatatatgttgtactaggagaattctaagagggcctgtggccttgctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29904512 192 + 173848474 GAAATGAAATATACCCTTGGCCACATGAATTACCTAGTGGAATTCAAGTGTGTGTGGATCAGTATAACAGCACgtaattctctgcactacatttactttccattaagttagaactacagtaaattattctataagctacaacttgatatatgttgtactaggagaattctaagagggcctgtgcccttgctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5714837 192 +   6154872 GAAATGAAATATACCCTTGGCCACATAAATTACCTAGTGGAATTCAAGTGTGTGTGGATCAGTATAACAGCATATAattctctgcactacatttactttccactaagttagaactacagtaaattattctataagctacaacttgatatatgttgtactaggagaattctaagagggcctgtggccttgctt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29944049 192 + 172585720 GAGACGAAATATACCCTTGGCCACATGAATTACCTGGTAGAATTCAAGTGTATGTGGATCAGCATAATGGCACATAattctctgcattacatttacttcccattaagttggaactatagcaaattattccataagctacaacttgatctaggttgtactaggagaattctaagagggcctgtacccttgctt
i rheMac8.chr4             C 0 N 0
s macFas5.chr4             29607979 192 - 170955103 GAGACGAAATATACCCTTGGCCACATGAATTACCTGGTAGAATTCAAGTGTATGTGGATCAGCATAATGGCACATAATTCTCTGCATTACATTTACTTCCCATTAAGTTGGAACTATAGCAAATTATTCCATAAGCTACAACTTGATCTAGGTTGTACTAGGAGAATTCTAAGAGGGCCTGTACCCTTGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2606741 192 -   2996164 GAGACGAAATATACCCTTGGCCACATGAATTACCTGGTAGAATTCAAGTGTATGTGGATCAGCATAATGGCACATAattctctgcattacatttacttcccattaagttggaactatagcaaattattccataagctacaacttgatctaggttgtactaggagaattctaagagggcctgtacccttgctt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     365371 192 +    766320 GAGACGAAATACACCCTTGGCCACATGAATTACCTGGTGGAATTCAAGTGTATGTGGATCAGCATAATGGCACATAattctctgcattacatttacttcccattaagttagaactatagcaaattattccataagctacaacttgatctaggttgtactaggagaattctaagagggcctgtacccttgctt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28823158 192 -  71996105 GAGATGAAATATACCCTTGGCCACATGAATTACCTGGTGGAATTCAAGTGTATGTGGATCAGCATAATGGCACATAattctctgcattacatttacttcccattaagttagaactatagcaaattattccataagctacaacttgatctaggttgtactaggagaattctaagagggcctgtacccttgctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     338105 192 -    352859 GAGACGAAATACACCCTTGGCCACATGAATTACCTGGTGGAATTCAAGTGTATGTGGATCAGCATAATGGCACATAattctctgcattacatttacttcccattaagttagaactatagcaaattattccataagctacaacttgatctaggttgtactaggagaattctaagagggcctgtacccttgctt
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2433934 192 -   3067355 GAGACGAAATATACCCTTGGCCACATGAATTACCTGGTGGAATTCAAGTGTATGTGGATCAGCATAATGGCACATAATTCTCTGCATTACATTTACTTCCCAATAAGTTAGAACTATAGCAAATTATTCCATAAGCTACAACTTGATCTAGGTTGTACTAGAAGAATTCTAAGAGGGCCTGTACCTTTGCTT
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57767428 6323 -  94987271 I
e dasNov3.JH569098           202692 20511 -    254539 I
e proCoq1.NW_012152574v1     456501 8284 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2128183 18754 -   2232465 I

a score=17630.000000
s hg38.chr6_GL000254v2_alt   700498 6 +   4827813 agaaaa
s panTro5.chr6             29673957 6 + 175400573 agaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29904704 6 + 173848474 agaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5715029 6 +   6154872 agaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1    2606933 6 -   2996164 aggaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     365563 6 +    766320 aggaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28823350 6 -  71996105 aggaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099655v1     338297 6 -    352859 aggaaa
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2434126 6 -   3067355 AGGAAA
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57767428 6323 -  94987271 I
e dasNov3.JH569098           202692 20511 -    254539 I
e proCoq1.NW_012152574v1     456501 8284 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2128183 18754 -   2232465 I
e macFas5.chr4             29608171 0 - 170955103 C

a score=4209720.000000
s hg38.chr6_GL000254v2_alt   700504 1077 +   4827813 agcaggtacaggggacagtggttgctgttcccacagccagggtggagaaagcaatgtcaaccactgcaaaggatgacAAAATAAAAAGAGTCAGTCAGCTCTCACAGAgcagcagcttgaaggcacagaaaagacacaagagaggaaggaccagaggagacattcctgaacacatcttgcaaactctcagaagtgactatgggatgcttcacgggggctaacttcaagcTCAAGTTTGACAACCATTTATGTTGTTTGGCTTTGGTCACATATATATCCTATTTTGTATCAGTAATTCCAGTTGGAAAAGAAACCACACATTTCCATGAGTCTCCCATGTTACTAAAATATTTCATAAGCTCGAGCTCAGTGATGTTTTCTGATTATTTGTTCCTTAGACTCCAGCCTAGGCATCCAAGGCAATCTGAATCCATAGAAACTTTAATAACAGTACATCATGGACCTAACCCAAAATATTGTTCAATCTCTTATCTTTGAAAACTTCTTGAGGATTAACAATATATTTTAATACAAAAGAGATAGTATTCAACCCAGCAGGATTTTACAAAAACAAATTATAGCTCTTTGTGGTTTCTGTTAGAGATTTACATAGTCTTACCATTTAGATTtcttcttcactagactacgaattagaagtaaatattatccagggcagatggtgtatcctattcatctttgtatcccaagaatattttagctgtgtcataaatgattagtgaataagtAGCaatgcatgaatgcatgaatgaaaaaataaaAATGGTCACTTGATTCATAATCCCTGGCCTTCTAAAAATATATTAACACAATGTCCGGTTGAAAAGAAAGTTCCAAACATTCCACCAgtagacatgactagcaatagagttgaccttcattatttgtggattcagtatttgcaaagtcacctgctccctaacatctatttttaacccctagctcaatactcacagcaccttcgcagtcgttcatggacaagtgcatgaacacagtgacaaaaagtttgagacacactgtatgcatccccacctgatgctgagcaaggaaacgctctgt
s panTro5.chr6             29673963 1077 + 175400573 agcaggtacaggggacagtggttgctgtttccacagccagggtggagaaagcaatgtcaaccactgcaaaggatgacAAAATAAAAAGAGTCAGTCAGCTCTCACAGAGCAGCAGCTTGAAGGCACAGAAAAGACACAAGAGAGGAAGGACCAGAGGAGACATTCTTGAACGCATCTTGCAAACTCTCAGAAGTGACTATGGGATGCTTCAGGGGGGCTAACTTCAAGCTCAAGTTTGACAACCATTTATGTTGTTTGGCTTTGGTCACATATATATCCTATTTTGTATCAGTAATTCCAGTTGGAAAAGAAACCACACATTTCCATGAGTCTCCCATGTTACTAAAATATTTCATAAGCTCGAGCTCAGTGATGTTTTCTGATTATTTGTTCCTTAGACTCCAGCCTAGGCATCCAAGGCAATCTGAATCCATAGAAACTTTAATAACAGTACATCATGGACCTAACCCAAAATATTGTTCGATCTCTTATCTTTGAAAACTTCTTGAGGATTAACAATATATTTTAATACAAAAGAGATAGTATTCAACCCAGCAGGATTTTACAAAAACAAATTATAGCTCTTTGTGGTTTCTGTTAGAGATTTACATAGTCTTACCATTTAGATTtcttcttcactagactacgaattagaagtaaatattatccagggcagatggtatatcctattcatctttgtatcccaagaatattttagctgtgtcataaatgattagtgaataagtAGCaatgcatgaatgcatgaatgaaaaaataaaAATGGTCACTTGATTCATAATCCCTGGCCTTCTAAAAATATATTAACACAATGTCCGGTTGAAAAGAAAGTTCCAAAGATTCCACCAgtagacatgactagcaatagagttgaccttcattatttgtggattcagtatttgcaaagtcacctgctccctaacatctatttttaacccctagctcaatattcacagcaccttcgcagtcgttcatggacaagtgcatgaacacagtgacaaaaagtttgagacacactgtatgcatctccacctgatgctgaacaaggaaacgttctgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29904710 1071 + 173848474 agcaggtacaggggacagtggttgctgttcccacagccagggtggagaaagcaatgtcaaccactgcaaaggatgacaaaataaaaagagtcagtcagctctcacagagcagcagcttgaaggcacagaaaagacacaagagaggaaggaccagaggagtcattcctgaacgcatcttgcaaactctcagaagtgactatgggatgcttcacggggactaacttcaagcTCAAGTTTGACAACCATTTATGTT-----GCTTTGGTCACATATATATCCTATTTTGTATCAGTAATTCCAGTTGGAAAAGAAACCACACATTTCCATGAGTCTCCCATGTTACTAAAATATTTCATAAGCTTGAGCTCA-TGATGTTTTCTGATTATTTGTTCCTTAGACTCCAGCCTAGGCATCCAAGACAATCTGAATCCATAGAAACTTTAGTAACAGTACATCATGGACCTAACCCAAAATATTGTTCGATCTCTTATCTTTGAAAACTTCTTGAGGATTAACAATATATTTTAATACAAAAGAGACAGTATTCAACCCAGCGGGATTTTACAAAAACAAATTATAGCTCTTTGTGGTTTCTGTTAGAGATTTACATAGTCTTACCATTTAGATTtcttcttcactagactatgaattagaagtaaatattatccagggcagatggtgtatcctattcgtctttgtatcccaagaatattttagctgtgtcataaatgattagtgaataagtAGCaatgcatgaatgcatgaatgaaaaaataaaAATGGCCACTTGATTCATAATCCCTGGCCTTCTAAAAATATATTAACACAATGTCCAGTTGAAAAGAAAGTTCCAAAGATTCCACCAgtagacatgactagcaatagagttgaccttcattatttgtggattcagtgtttgcaaagtcatctgctccctaacatctatttttaacccctagctcaatactcacagcaccttcgcagtcgttcatggacaagtgcatgaacacagtgacaaaaagtttgagacacactgtatgcatccccacctgatgctgaacaaggaaacgctctgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5715035 1077 +   6154872 agcaggtacaggggacagtggttgctgttcccacagccagggtggagaaagcaatgtcaaccactgcaaaggatgacAAAATAAAAAGAGTCAGTCAGCTCTCACAGAgcagcagcttgaaggcacagaaaagacacaagagaggaaggaccagaggagacattcctgaacgcatcttgcaaactctcagaagtgactatgggatgcttcaggggggctaacttcaagcTCAAGTTTGACAACCATTTATGTTGTTTGGCTTCGGTCACATGTATATCCTATTTTGTATCAGTAATTCCAGTTGGAAAAGAAACCAAACATTTCCATGAGTCTCCCATGTTACTAAAATATTTCATAAGCTCGAGCTCAGTGATGTTTTCTGATTATTTGTTCCTTAGCCTCCAGCCTAGGCATCCAAGGCAATCTGAATCCATAGAAACTTTAATAACAGTACATCATGGACCTAACCCAAAATATTGTTCGATCTCTTATCTTTGAAAACTTCTTGAGGATTAACAATATATTTTAATACAAAAGAGATAGTATTCAACCCAGCAGGATTTTACAAAAACAAATTATAGCTCTTTGTGGTTTTTGTTAGAGATTTACATAGTCTTACCATTTAGATTtcttcttcactagactacgaattagaagtaaatattatccagggcagatggtgtatcctattcatctttgtatcccaagaatattttagctgtgtcataaatgattagtgaataagtAGCaatgcatgaatgcatgaatgaaaaaataaaAATGGTCACTTGATTCATAATCCCTGGCCTTCTAAAAATATATTAACACAATGTCCGGTTGAAAAGAAAGTTCCAAAGTTTCCACCAgtagacatgactagcaatagagttgaccttcattatttgtggattcagtatttgcaaagtcacctgctccctaacatctatttttaacccctagctcaatactcacagcaccttcgcagtcgttcatggacaagtgcatgaacacagtgacaaaaagtttgagacacactgtatgcatccccacctgatgctgaacaaggaaacgctctgt
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120          0 1076 +     27237 AGCAGGTACAGGGGACAGTGGTTGCTGTTCCCACAGCCAGGGTGGAGAAAGCAATGCCAACCACTGCAAAGGATAACTAAATAAAAAgaggcagtcagcactcacagagcagcagcttgaaggcacagaaaagacacaggagaggaaggaccagaggagtcattcccaaacgcatcttgcaaactctcagaaatggctatgggatgctttacgggggctaacttcaagcTCAAATTTGACAACCATTTATGTTGTTTGGTCTTGGTCACATATATATTCTACTTTGTATCAGTAATTCCAGTTGGAAAAGAGAACACACGTTTCCATGAGTCTCCCATGTTACTAGAATATTTCATAAGCACGAGCTCAGTGATGTTTTCTGGTTATTTGTTCCTTAGACCCCAGCCTAGGCATCCTAGGCAATCTGAATCCATGGAATCTTTAATAACAGTACATCATGGACCTAACCCAAAATATTGTTTGATCTTATATCTTTGAAAACTTCTTGAGGATTAACAATACATTTTAATACAAAAGAGATAGTATTCAACTCAGCAGGATTTTACAAAAACAAATTACAGCTCTTTGTGGTTTCTGTTAGAGATTTACATAGTCTTGCCATTCAGATTTCCTCTTCACTAGACTACAAATTAGAAGTAAGTATTATCCAGGGCAGATGGCATATGCTATTTGTCTTTATATCCCAAGAATATTTTAGCTGTGTCATAAATGATTAGTGAATAAGCAAAAATGCATAAATGGACAAAGGAAAAAATTAAAATGGTCATTTGATTCATAATCCCTGGCCTTCTGAAAATATATTAACACAATGTCCAGTTGAAAAGAAAGTTCCAAAGATTCCACCAGTAGACATGACTAGCAATAGAACTgaccttcattatttgtggattcagtatttgcaaaatcacctgctccct-acatctatttttaacccctagatcaatactcacagcactttcgcagtcattcatgaacaagtgcatgaacacagtgacaaaaaatttgagacacactgcatgcatccccacctgatgctgaacaaggaaacactctgt
i macFas5.chrUn_KE146120   n 0 C 0
s macNem1.NW_012011356v1    2606939 1076 -   2996164 agcaggtacaggggacagtggttgctgttcccacagccagggtggagaaagcaatgccaaccactgcaaaggataactaaataaaaagaggcagtcagcactaacagagcagcagcttgaaggcacagaaaagacacaggagaggaaggaccagaggagtcattcccaaacgcatcttgcaaactctcagaaatggctatgggatgctttacgggggctaacttcaagcTCAAATTTGACAACCATTTATGTTGTTTGGTCTTGGTCACATATATATTCTACTTTGTATCAGTAATTCCAGTTGGAAAAGAGAACACACGTTTCCATGAGTCTCCCATGTTACTAGAATATTTCATAAGCACGAGCTCAGTGATGTTTTCTGGTTATTTGTTCCTTAGACCCCAGCCTAGGCATCCTAGGCAATCTGAATCCATGGAATCTTTAATAACAGTACATCATGGACCTAACCCAAAATATTGTTTGATCTTATATCTTTGAAAACTTCTTGAGGATTAACAATACATTTTAATACAAAAGAGATAGTATTCAACTCAGCAGGATTTTACAAAAACAAATTACAGCTCTTTGTGGTTTCTGTTAGAGATTTACATAGTCTTGCCATTCAGATTtcctcttcactagactacaaattagaagtaagtattatccagggcagatggcatatcctatttgtctttatatcccaagaatattttagctgtgtcataaatgattagtgaataagcaaaAATGCATAAATGGACAAAGGAAAAAATTAAAATGGTCATTTGATTCATAATCCCTGGCCTTCTGAAAATATATTAACACAATGTCCAGTTGAAAAGAAAGTTCCAAAGATTCCACCAGTAGACATGACTAGCAATAGAACTgaccttcattatttgtggattcagtatttgcaaaatcacctgctccct-acatctatttttaacccctagatcaatactcacagcactttcgcagtcattcatgaacaagtgcatgaacacagtgacaaaaaatttgagacacactgcatgcatccccacctgatgctgaacaaggaaacactctgt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     365569 1077 +    766320 agcaggtacaggggacagtggttgctgttcccacagccagggtggagaaagcaatgccaaccactgcaaaggataactaaataaaaagaggcagtcagcactcacagagcagtagcttgaaggcacagaaaagacacaggagaggaaggaccagaggagtcattcccaaacgcagcttgcaaactctcagaaatggctatgggatgctttacaggtgctaacttcaagcTCAAGTTTGACAACCATTTATGTTGTTTGGTCTTGGTCACGTATATATTCTACTTTGTATCAGTAATTCCAGTTGGAAAAGAAAACACACATTTCCATGAGTCTCCCATGTTAATAGAATATTTCATAAGCACGAGCTCAGTGATGTTTTCTGGTTATTTGTTCCTTAGACCCCAGCCTAGGCATCCTAGGCAATCTGAATCCATGGAATCTTTAATAACAGTACATCATGGACCTAATCCAAAATATTGTTTGATCTCATATCTTTGAAAACTTCTTGAGGATTAACAATACATTTTAATACAAAAGAGATAGTATTCAACCCAGCAGGATTTTACAAAAACAAATTACAGCTCTTTGTGGTTTCTGTTAGAGATTTACATAGTCTTGCCATTTAGATTtcctcttcactagactacaaattagaagtaagtattatccagggcagatggcatatcctatttgtctttatatcccaagaatattttagctgtgtcataaatgattagtgaataaGCAGAAATGCATAAATGGACGAAGGAAAAAATTAAAATGGTCATTTGATTCATAATTCCTGGCCTTCTGAAAATATATTAACACAATGTCCAGTTGAAAAGAAAGTTCCAAAGATTCCACCAgtagacatgactagcaatagagctgaccttcattatttgtggattcagtatttgcaaaatcacctgctccctaacatctatttttaacccctagatcaatactcacagcactttcgcagtcattcatgaacaagtgcatgaacacagtgacaaaaaatttgagacacactacatgcatccccacctgatgctgaacaaggaaacattctgt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28823356 1077 -  71996105 agcaggtacaggggacagtggttgctgttcccacagccagggtggagaaagcaatgccaaccactgcaaaggataactaaataaaaagaggcagtcagcactcacagagcagcagcttgaaggcacagaaaagacacaggagaggaaggaccagaggagtcattcccaaacgcatcttgcaaactctcagaaatggctatgggatgctttacaggtgctaacttcaagcTCAAGTTTGACAACCATTTATGTTGTTTGGTCTTGGTCACATATATATTCTACTTTGTATCAGTAATTCCAGTTGGAAAAGAAAACACACATTTCCATGTGTCTCCCATGTTAATAGAATATTTCATAAGCACGAGCTCAGTGATGTTTTCTGGTTATTTGTTCCTTAGACCCCAGCCTAGGCATCCTAGGCAATCTGAATCCATGGAATCTTTAATAACAGTACATCATGGACCTAACCCAAAATATTGTTTGATCTCATATCTTTGAAAACTTCTTAAGGATTAACAATACATTTTAATACAAAAGAGATAGTATTCAACCCAGCAGGATTTTACAAAAACAAATTACAGCTCTTTGTGGTTTCTGTTAGAGATTTACATAGTCTTGCCATTTAGATTTCCTCTTCACTAGACTACAAATTAGAAGTAAGTATTATCCAGGGCAGATGGCATATCCTATTTGTCTTTATATCCCAAGAATATTTTAGCTGTGTCATAAATGATTAGTGAATAAGCAGAAATGCATAAATGGATGAAGGAAAAAATTAAAATGGTCATTTGATTCATAATCCCTGGCCTTCTGAAAATATATTAACACAATGTCCAGTTGAAAAGAAAGTTCCAAAGATTCCACCAGTAGACATGACTAGCAATAGAGCGgatcttcattatttgtggattcagtatttgcaaaatcacctgctccctaacatctatttttaacccctagattaatactcacagcactttcacagtcattcatgaacaagcacatgaacacagtgacaaaaaatttgagacacactgcatgcatccccacctgatgctgaacaaggaaacgctctgt
i chlSab2.chr17            C 0 I 21330
s manLeu1.NW_012099655v1     338303 1077 -    352859 agcaggtacaggggacagtggttgctgttcccacagccagggtggagaaagcaatgccaaccactgcaaaggataactAAATAAAAAGAGGCAGTCAGCACTCACAGAGCAGTAGCTTGAAGGCACAGAAAAGACACAGGAGAGGAAGGACCAGAGGAGTCATTCCCAAACGCATCTTGCAAACTCTCAGAAATGGCTATGGGATGCTTTACAGGTGCTAACTCCAAGCTCAAGTTTGACAACCATTTATGTTGTTTGGTCTTGGTCACGTATATATTCTACTTTGTATCAGTAATTCCAGTTGGAAAAGAAAACACACATTTCCATGAGTCTCCCATGTTAATAGAATATTTCATAAGCACGAGCTCAGTGATGTTTTCTGGTTATTTGTTCCTTAGACCCCAGCCTAGGCATCCTAGGCAATCTGAATCCATGGAATCTTTAATAACAGTACATCATGGACCTAATCCAAAATATTGTTTGATCTCATATCTTTGAAAACTTCTTGAGGATTAACAATACATTTTAATACAAAAGAGATAGTATTCAACCCAGCAGGATTTTACAAAAACAAATTACAGCTCTTTGTGGTTTCTGTTAGAGATTTACATAGTCTTGCCATTTAGATTtcctcttcactagactacaaattagaagtaagtattatccagggcagatggcatatcctatttgtctttatatcccaagaatattttagctgtgtcataaatgattagtgaataaGCAGAAATGCATAAATGGACGAAGGAAAAAATTAAAATGGTCATTTGATTCATAATCCCTGGCCTTCTGAAAATATATTAACACAATGTCCAGTTGAAAAGAAAGTTCCAAAGATTCCACCAgtagacatgactagcaatagagctgaccttcattatttgtggattcagtatttgcaaaatcacctgctccctaacatctatttttaacccctagatcaatactcacagcactttcgcagtcattcatgaacaagtgcatgaacacagtgacaaaaaatttgagacacactacatgcatccccacctgatgctgaacaaggaaacattctgt
i manLeu1.NW_012099655v1   C 0 C 0
s colAng1.NW_012115566v1    2434132 1062 -   3067355 AGCAGGTACAGGAGACAGTGGTTGCTGTTCCCACAGCCAGGGTGAAGAAAGCAATGCCAACCACTGCAAAGGATAACTAAATAAAAAgaggcagtcagcactcacagagcagcagcttgaaggcacagaaaagacacaggagaggaaggaccagaggagtcattcccaaacgcatcttgcacactctcagaaatggctatgggatgctttacgggggctaacttTAAGCTCAAGTTTGACAACCATTTATGTTGTTTGGTCTTGGTCACATGTATATCCTACTTTGTGTCAGTAATTCCAGTTGGAAAAGAAAACACACGTTTCCTTG-GTCTC------------AATATTTCATAAACACGAGCTCAGTGATGTTTTCTGATTATTTGTTCCTTAGACCCCAGCCTAGGCATCCTAGGCAATCTGAATCCATGGAATATTTAATAACAGTACGTCATGGACCTAACCCAAAATATTGTTTGATCTCATATCTTTGAAAATTTCTTGAGGATTAACAATACATTTTAATACAAAAGAGATAGTATTCAACCCAGCAGGATTTTACAAAAACAAATTATAGCTCTTTGTGGTTTCTGTTAGAGATTTACATAGTCTTGCCATTTAGATTTCCTCTTCACTAGACTACAAATTAGAAGAAAATATTATCCAGGGCAGATGGCATATCCTACTTGTCTTTATATCCCAAGAATATTTTAGCTGTGTCATAAATGATTAGTGAATAAGCAGAAATGCGTAAATGGACGAATGAAAAAATAAAAATGGTCATTTGATTCATAATCCCTGGCCTTCTGAAAATATATTAACACAACGTCCAGTTGAAAAGAAAGTTCCAAAGATTCCACCAgtagacatgactagcaatagagctgaccttcattatttgtagattcagtatttgcaaaatcacctgttccctaacatctatttttaacccctagatcaatact--cagtaccttcacagtcattcatgaacaagtgcatgaacacagtgacaaaaaatttgagacacactgcatgcatccccacctgatgctgaacaaggaaaagctctgt
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57767428 6323 -  94987271 I
e dasNov3.JH569098           202692 20511 -    254539 I
e proCoq1.NW_012152574v1     456501 8284 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2128183 18754 -   2232465 I

a score=2349168.000000
s hg38.chr6_GL000254v2_alt   701581 769 +   4827813 cctcttgtttcagctattatactgtaaacaagtgtccttttcatgatttcctgatttgctgaatgccatatttttcacattttttgtttgttttttggtgatttcataattcaaaatagccccaaatgtagcgctgaagtgctgtcccatgctcctgagcacaaaaatgttgcaatggatcttacgg-agaaaatgcatttgctagataagctctgttcaggcatgtgttatagggctgttggctgtgggttcaacgttaatgatcaacgatatatattatataagatgtgtttaaacagaaacacacttacaataaggttat-----------ttatt--gatcaggtgacaaaaatgtgac-caaaaactcataggaatctaaccctgcatctcccctaaagcaaggaattatttaatatttgctcctacagggttcaaggcaactttatagaatgcaactgcagtgaataataagaatcagctgtgtctgcattttaaagatgagaaatatgagtctcattaaaatgaagtgaattgtacaaagttatagaataggttagtcatagagccagcattaaaaccctggcctagttcagtgctctgtcagctgtatcTTCAGTTCTGAAAATGCAATAAGAAAAGATAAAATACGGAATTCAGTCGGCCAGTGGCCCGCAATCCTCTTCTCTCGGTTCCTCTTTCCTCGCTCAAGATGGCGCTGCTCGCGAAGCGTTCTTGGCGTTGGGCGGCCGCAGCGGCTGCTTTCGAAAAGCGCCAGcac
s panTro5.chr6             29675040 769 + 175400573 cctcttgttccagctattatactgtaaacaagtgtccttttcatgatttcctgatttgctgaatgccatatttttcacattttttgtttgttttttggtgatttcataattcaaaatagccccaaatgtagcgctgaagtgctgtcccatgctcctgagcacaaaaagattgcaatggatcttacgg-agaaaatgcatttgctagataagctctgttcaggcatgtgttatagggctgttggctgtgggttcaacgttaatgatcaacgatatatattatataagatgtgtttaaacagaaacacacttacaataaggttat-----------ttatt--gatcaggtgacaaaaatgtgac-caaaaactcataggaatctaaccctgcatctcccctaaagcaaggaattatttagtatttgctcctacagggttcaaggcaactttatagactgcaactgcagtgaatagtaagaatcagctgtgtctgcattttaaagatgagaaatatgagtctcattaaaatgaagtgaattgtacaaagttatagaataggttagtcatagagccaggattaaaaccctggcctagttcagtgctctgtcagctgtatcTTCAGTTCTGAAAATGCAATAAGAAAAGATAAAATACGGAATTCAGTCGGCCAGTGGCCCGCAATCCTCTTCTCTCGGTTCCTCTTTCCTCGCTCAAGATGGCGCTGCTCGCGAAGCGTTCTCGGCGTTGGGCGGCCGCAGCGGCTGCTTTCGAAAAGCGCCAGcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29905781 769 + 173848474 cctcttgtttcagctattatactgtaaacaagtgtccttttcatgatttcctgatttgctgaatgccatatttttcacattttttgtttgttttttggtgatttcatatttcaaaatagccccaaatgtagcgctgaagagctgtcccatgctcctgagcacaaaaaggttgcaacggatcttacgg-agaaaatgcatttgctagataagctctgttcaggcatgtgttatagggctgttggctgtgggttcaacgttaatgatcaacgatatatattatataagatgtgtttaaacagaaacacacttacaataaggttat-----------ttatt--gatcaggtgacaaaaatgtgac-caaaaactcataggaatctaaccctgcatctcccctaaagcaaggaagtatttagtatttgctcctacagggttcaaggcaactttatagaatgtaactgcagtgaataatgagaatcagctgtgtctgcattttaaagatgagaaatatgattctcattaaaatgaagtgaattgtacaaagctatagaatacgttagtcatagagccaggattaaaaccctggcctagttcagtgctctgtcagctgtatcTTCAATTCTGAAAACGCAATAAGAAAAGATAAAATACGGAATTCAGTCGGCCAGTGGCCCGCAATCCTCTTCTCTCGGTTCCTCTTTCCTCGCTCAAGATGGCGCTGCTCGCGAAGCGTTCTCGGCGTTGGGCGGCGGCAGCGGCTGCTTTCGAAAAGCGCCAGcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5716112 782 +   6154872 cctcttgtttcagctattatactgtaaacaagtgtccttttcatgatttcctgatttgctgaatgccatatttttcacattttttgtttgttttttggtgatttcataattcaaaatagccccaaatgtagcgctgaagtgctgtcccatgctcctgagcacaaaaaggttgcaatggatcttacgg-agaaaatgcatttgctagataagctctgttcaggcatgtgttatagggctgttggctgtgggttcaacgttaatgatcaacgatatatattatataagatgtgtttaaacagaaacacacttacaataaggttattgacaataaccttattacaataaggtgacaaaaatgtgac-caaaaactcataggaatctaaccctgcatctcccctaaagcaaggaaggatttagtatttgctcctacagcgttcaaggcaactttatagaatgcaactgcagtgaataataagaatcagctatgtctgcattttaacgatgagaaatatgagtctcattaaaatgaagtgaattgtacaaagttatagaataggttagtcatagagccaggattaaaaccgtggcctagttcagtgctctgtcagctgtatcTTCAGTTCTGAAAATGCAATAAGAAAAGATAAAATACGGAATTCAGTCGGCCAGTGGCCCGCAATCCTCTTCTCTCGATTCCTCGTTCCTCGCTCAAGATGGCGCTGCTCGCGAAGCGTTCTTGGCGTTGGGCGGCTGCAGCGGCTGCTTTCGAAAAGCGCCAGcac
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120       1076 767 +     27237 cctcttgtttcagctatcataccatcaacaagtgtccttttcattatttcacgatttgttgaatgccacatttttcacagtttttgtttgttttttggtgatttcataattctaaatagccctaaatgtagcactgaagcgatgtctggtgctcctgagcacaaaaaggttgcgatggatcttatgg-agaaaatacatttgctagataagctctgttcaagcatgtgttatagggctgttggctgtggattcaaagttaatgatcaatgatatatcttacataagatgtgtttaaacagaaacacacttacaataaggttat-----------ttatt--gatcaggtgacaaaaatgtgacaaaaaaactcataggaatctaaccctgcatctcccctaaagcaaggagagatttagtatttgctcctacagggttcaatgcaactttatagaatgtaactgcagtgaataat---aatcagctgtgtctgcattttaaagataagaaatatgagtctcggaaaagtgaagtgaattgtaccaagttatagagtaggttagtcatggagccaggattaaaaccctagcctagttcagtgctctgtcagctataccTTCAGTTCTGAAAATGCAATAAGAAAAGATAAAATACGGAATTCAGTCCGCCAGTGACCCACAATCCTCTTCTCTCGGTTCCTATTTCCTCGCTCAAGATGGCGCTGTTCGCAAAGCGTTTTTGGCGTTGGGCGGCAGCAGCGGCTGCTTTCGAAAAGCGCCAGCAC
i macFas5.chrUn_KE146120   C 0 I 6535
s macNem1.NW_012011356v1    2608015 766 -   2996164 cctcttgtttcagctatcataccatcaacaagtgtccttttcattatttcacgatttgctgaatgccacatttttcacagtttttgtttgttttttggtgatttcataattctaaatagccctaaatgtagcactgaagtgatgtctggtgctcctgagcacaaaaaggttgcgatggatcttatgg-agaaaatacatttgctagataagctctgttcaagcatgtgttatagggctgttggctgtggattcaaagttaatgatcaatgatatatcttacataagatgtgtttaaacagaaacacacttacaataaggttat-----------ttatt--gatcaggtgacaaaaatgtgac-aaaaaactcataggaatctaaccctgcatctcccctaaagcaaggagagatttagtatttgctcctacagggttcaatgcaactttatagaatgtaactgcagtgaataat---aatcagctgtgtctgcattttaaagataagaaatatgagtctcgggaaagtgaagtgaattgtaccaagttatagagtaggttagtcatggagccaggattaaaaccctagcctagttcagtgctctgtcagctataccTTCAGTTCTGAAAATGCAATAAGAAAAGATAAAATACGGAATTCAGTCCGCCAGTGACCCACAATCCTCTTCTCTCGGTTCCTATTTCCTCGCTCAAGATGGCGCTGTTCGCAAAGCGTTTTTGGCGTTGGGCGGCAGCAGCGGCTGCTTTCGAAAAGCGCCAGCAC
i macNem1.NW_012011356v1   C 0 I 27512
s cerAty1.NW_012002711v1     366646 770 +    766320 cctcttgtttcagctatcataccatcaacaagtgtccttttcattatttcacgatttgctgaatgccacatttttcacagtttttgtttgttttttggtgatttcataattctaaatagccccaaatgcagcactgaagtgctgtctcgtgctcctaagcacaaaaaggctgcgatggatcttatggaaaaaaatgcatttgctagataagctctgttcaagcatgtgttatagggctgttggctgtggattcaaagttaatgatcaatgatatatctcacataagatgtgtttaaacagaaacacacttacaataaggttat-----------ttatt--gatcaggtgacaaaaatgtgac-aaaaaactcataggaatcgaaccctgcatctcccctaaagcaaggagagatttagtatttgctcctacagggttcaaggcaactttatagaatgtaactgcagtgaataataacaatcagctgtgtctgcattttaaagttaagaaatatgagtctcgggaaagtgaaatgaattgtaccaagttatagagtaggttagtcatggagccaggattaaaaccctagcctagttcagtgctctgtcagttataccTTCAGTTCTGAAAATGCAATAAGAAAAGATAAAATACAGAATTCAGTCGGCCAGTGACCCACAATCCTCTTCTCTCGGTTCCTCTTTCCTCGCTCAAGATGGCGCTGCTCGCAAAGCGTTTTTGGTGTTGGGCGGCAGCAGCGGCTGCTTTCGAAAAACGCCAGCAC
i cerAty1.NW_012002711v1   C 0 I 20526
s manLeu1.NW_012099655v1     339380 769 -    352859 cctcttgtttcagctatcataccatcaacaagtgtccttttcattatttcacgatttgctgaatgccacatttttcacagtttttgtttgttttttggtgatttcataattctaaatagccccaaatgcagcactgaagtgctgtctcgtgctcctaagcacaaaaaggctgcgatggatcttatgg-aaaaaatgcatttgctagataagctctgttcaagcatgtgttatagggctgttggctgtggattcaaagttaatgatcaatgatatatctcacataagatgtgtttaaacagaaacacacttacaataaggttat-----------ttatt--gatcaggtgacaaaaatgtgac-aaaaaactcataggaatcgaaccctgcatctcccctaaagcaaggagagatttagtatttgctcctacagggttcaaggcaactttatagaatgtaactgcagtgaataataacaatcagctgtgtctgcattttaaagttaagaaatatgagtctcgggaaagtgaaatgaattgtaccaagttatagagtaggttagtcatggagccaggattaaaaccctagcctagttcagtgctctgtcagttataccTTCAGTTCTGAAAATGCAATAAGAAAAGATAAAATACAGAATTCAGTCGGCCAGTGACCCACAATCCTCTTCTCTCGGTTCCTCTTTCCTCGCTCAAGATGGCGCTGCTCGCAAAGCGTTTTTGGTGTTGGGCGTCAGCAGCGGCTGCTTTCGAAAAACGCCAGCAC
i manLeu1.NW_012099655v1   C 0 N 0
s colAng1.NW_012115566v1    2435194 768 -   3067355 cctcttgtttcagctatcgtactgccaacaagtgtccttttcattatttcacgatttgctgactgccacatttttcacagtttttgcttgttttttggtgatttcataattctaaacagccccaaatgtagcactgaagtgctatctcgtgctcctgagcacaaaaaggctgtgatggatcttatgg-agaaaatgcatttgctagataagctctgttcaagcatgtgttatagggctgttggctgtggattcaaagttaatgatcaatgatatatcttacataagatgtgtttaaacagaaacacacttacaataaggttat-----------ttatt--gatcaggtgataaaaatgtgac-aaaaaactcatgggaatctaaccctgcatctcccctaaagcaaggagagatttagtatttggccctacagggttcaaggcaactttatagaatgtaactgcagtgaataataacaatcagctgtgtctgcattttaaagataagaaatatgagtctcgggaaagcgaagtgaatcgtgccaagttatacagtaggttagtcatgaagcctggattaaaaccctggcctagttcagtgctctgtcagctataccTTCAGTTCTGAAAATGCAATAAGAAAAGATAAAATACGGAATTCAGTCCGCCAGTGACCCACAGTCCTCTTCTCTCGGTTCCTCTTTCCTCGCTCAAGATGGCGCTGCTCGCAAAGCGTTTTTGGC-TTGGGCGACAGCAGCGGCTGCTTTCGAAAAGCGCCAGCAC
i colAng1.NW_012115566v1   C 0 I 11023
e mm10.chr17               57767428 6323 -  94987271 I
e dasNov3.JH569098           202692 20511 -    254539 I
e proCoq1.NW_012152574v1     456501 8284 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2128183 18754 -   2232465 I
e chlSab2.chr17            28824433 21330 -  71996105 I

a score=206134.000000
s hg38.chr6_GL000254v2_alt   702350 375 +   4827813 aatgagataccatctcacaccagctagaatgccgatcattaaaaagtcaggaaacgacaggtgctggagaggatgtggagaaatagg-aacacttttacgctgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagcaatcccattactgggtatatacccaaaggattataaatcatgctgctataaagacacatgcacatgtatgtttattgtggcactattcacaatagcaaagacttggaaccaacacaaatgtccaacaatgatagactggattaagaaaatgtggcacatacacaccatggaatactatgcagc
s panTro5.chr6             29675809 375 + 175400573 aatgagataccatctcacaccagctagaatgccgatcattaaaaagtcaggaaacgacaggtgctggagaggatgtggagaaatagg-aacacttttacgctgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagcaatcccattactgggtatatacccaaaggattataaatcatgctgctataaagacacatgcacatgtatgtttattgtggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatacacaccatggaatactatgcagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29906550 376 + 173848474 aatgagataccatctcacaccagttagaatgccgatcattaaaaagtcaggaaacgacaggtgctggagaggatgtggagaaataggaaacacttttacgctgctggtgggactgtaaactagttcaaccattgtggaagtccgtgtggcgattcctcagggttctagaactagaaataccatttgacccagcgatcccattactgggtatatacccaaaggattataaatcatgctgctataaagacacatgcacacgtatgtttattgtggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatcatagactggattaagaaaatgtggcacatacacaccatggaatactatgcagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5716894 375 +   6154872 aatgagataccatctcacaccagtcagaatgccgatcattaaaaagtcaggaaacgacaggtgctggagaggatgtggagaaatagg-aacacttttacgctgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctggaactagaaataccatttgacccagcaatcccattactgggtatatacccaaaggattataaatcatgctgctataaagacacatgcacatgtacgtttattgtggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtgacacatacacaccatggaatactatgcagc
i gorGor5.CYUI01015250v1   C 0 C 0
e mm10.chr17               57767428 6323 -  94987271 I
e dasNov3.JH569098           202692 20511 -    254539 I
e proCoq1.NW_012152574v1     456501 8284 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2128183 18754 -   2232465 I
e colAng1.NW_012115566v1    2435962 11023 -   3067355 I
e chlSab2.chr17            28824433 21330 -  71996105 I
e cerAty1.NW_012002711v1     367416 20526 +    766320 I
e macNem1.NW_012011356v1    2608781 27512 -   2996164 I
e macFas5.chrUn_KE146120       1843 6535 +     27237 I

a score=276795.000000
s hg38.chr6_GL000254v2_alt   702725 68 +   4827813 catTCTGCATCtttctaatgacaagaatattctccagcataaccacaatactattattacacccaagg
s panTro5.chr6             29676184 68 + 175400573 catTCTGCATCtttctaatgacaagaatattctccagcataaccacaatactattattacacccaagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29906926 68 + 173848474 catTCTGCGTCtttctaatgacaagaacattctccagcacaaccacaatactattattacacccaagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5717269 68 +   6154872 tatTCTGCATCtttctaatgacaagaatattctccagcataaccacaatactattattacacccaagg
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120       8378 68 +     27237 cattctgcatctttctaatgacaagaacattctccaacataaccacaatactattattacacccaagg
i macFas5.chrUn_KE146120   I 6535 C 0
s macNem1.NW_012011356v1    2636293 68 -   2996164 cattctgcatctttctaatgacaagaacattctccaacataaccacaatactattattacacccaagg
i macNem1.NW_012011356v1   I 27512 C 0
s cerAty1.NW_012002711v1     387942 68 +    766320 cattctgcatctttctaatgacaagaacattctccaacataaccacaatactattattacacccaagg
i cerAty1.NW_012002711v1   I 20526 C 0
s chlSab2.chr17            28845763 68 -  71996105 cattctgcatctttctaatgacaagaacattctccaacataaccacaatactattattatacccaagg
i chlSab2.chr17            I 21330 C 0
s manLeu1.NW_012099233v1       9076 68 +    290775 cattctgcatctttctaatgacaagaacattctccaacataaccacaatactattattacacccaagg
i manLeu1.NW_012099233v1   N 0 C 0
s colAng1.NW_012115566v1    2446985 68 -   3067355 cattctgcatctttctaatgacaagaacattctccaacataaccataatactattattacacccaagg
i colAng1.NW_012115566v1   I 11023 C 0
e mm10.chr17               57767428 6323 -  94987271 I
e dasNov3.JH569098           202692 20511 -    254539 I
e proCoq1.NW_012152574v1     456501 8284 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I
e otoGar3.GL873742          2128183 18754 -   2232465 I

a score=1462170.000000
s hg38.chr6_GL000254v2_alt   702793 349 +   4827813 gaattaacattgaaccaataatataa--------aacccatattcaactttcccacttgttccaaatcttttttatagttgttt----ttattttgtt----ttgttgatgacgtaggatccagtcaaaaatcatgaatgacattttattgccatggcttttggtcttcttcaatctggaacgatgtcatctcccatctttgctttgtctttaaagacatggatattttttaagagtttgtgtcagttgtctatagaatatgccacaatatggatttgtctgactgttttc------ttatactccaattaaacatttttagcaataatactacataggtTACACTA--AGAGTGGACAAATAGCAATCCAAA
s panTro5.chr6             29676252 349 + 175400573 gaattaacattgaaccaataatataa--------aacccatattcaactttcccacttgttccaaatctcttttatagttgttt----ttattttgtt----ttgttgatgatgtaggatccagtcaaaaatcatgaatgacattttattgccatggcttttggtcttcttcaatctggaacgatgtcatctcccatctttgctttgtctttaaagacattgatattttttaagactttgtgtcacttgtctatagaatatgccacaatatggatttgtctgactgttttc------ttatactccaattaaacatttttagcaataatactacataggtTACACTA--AGAGTGGACAAATAGCAATCCAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29906994 349 + 173848474 gaattaacattgaaccaataatataa--------aacccatgttcaattttcccacttgtttcaaatctcttttatagttgttt----ttattttgtt----ttgttgatgatgtaggatccagtcaaaaatcatgaataacattttattgccatgccttttggtcttcttcaatctggaacgatgtcatctcccatctttgctttgtctttaaagacattgatattttttaagagtttgtgtcagttgtctatagaatatgccacaatatggatttgtctgactgttttc------ttatactccaattaaacatttttagcaataatactacataggtTACACTA--AGAGTGGGCAAATAGCAATCCAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5717337 349 +   6154872 gaattaacattgaaccaataatataa--------aacccatattcaactttcccacttgttccaaatctcttttatagttgttt----ttattttgtt----ttgttgatgatgtaggatccagtcaaaaatcatgaatgacattttattcccatgccttttggtcttcttcaatctggaacgatgtcatctcccatctttgctttgtctttaaagacatcgatattttttaagagtttgtgtcagttgtctatagaatatgccacaatatggatttgtctgactgttttc------ttatactccaattaaacatttttagcaataatactacataggtTACACTA--AGAGTGGGCAAATAGCAATCCAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120       8446 346 +     27237 gaattaacattgaaccaataataaaa--------agcccatattcaattttcccactggtttcaaatgtcttttatagttgt---------ctttgtt----ttgttgatgatgtaggatccagtcaaaaataatgaataacattttattgccatgtgttttggtcttcttcaatatggaacaatgtcatctcccatctttgttttgtctttaaagacattgatatttttgaagagtttgtgtcagttgtctatagaatatgccacaatatgggtttgtctgactgttttc------ttatactccaattaaacatttttggcagtaatactacataggtTACACTAATAGAGTGGGCAAATAGCGATCCAAA
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2636361 346 -   2996164 gaattaacattgaaccaataataaaa--------agcccatattcaattttcccactggtttcaaatgtcttttatagttgt---------ctttgtt----ttgttgatgatgtaggatccagtcaaaaataatgaataacattttattgccatgtgttttggtcttcttcaatatggaacaatgtcatctcccatctttgttttgtctttaaagacattgatatttttgaagagtttgtgtcagttgtctatagaatatgccacaatatgggtttgtctgactgttttc------ttatactccaattaaacatttttggcagtaatactacataggtTACACTAATAGAGTGGGCAAATAGCGATCCAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     388010 346 +    766320 gaattaacattgaaccaataataaaa--------agcccatattcaattttcccacttgtttcaaatgtgttttatagttgt---------ttttgtt----ttgttgatgatgtaggatcgggttaaaaataatgaataagattttattgccatgcgttttggtcttcttcaatatggaacaatgtcatctcccatctttgttttgtctttaaagacactgatatttttgaagagtttgtgtcagttgtctatagaatatgccacaatatgagtttgtctgactgttttc------ttatactccaattaaacatttttggcaataatactacataggtTACACTAATAGAGTGGGCAAATAGCTATCCAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28845831 346 -  71996105 gaattaacattgaaccaataataaaa--------agcccatattcaattttcccacttgtttcaaatgtcttttatagttgt---------ctttgtt----ttgttgatgatgtaggatccagtcaaaaataatgaataacattttattgccatgtgttttggtcttcttcaatatggaacaatgtcatctcttatctttgttttgtctttaaagacattgatatttttgaagagtttgtgtcagttgtctatagaatatgccacaatatgggtttgtctgactgttttc------ttatactccaattaaacatttttggcagtaatattacataggtTACACTAATAGAGTGGGCAAATAGCGATCCAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1       9144 346 +    290775 gaattaacattgaaccaataataaaa--------agcccatattcaattttcccacttgtttcaaatgtgttttatagttgt---------ttttgtt----ttgttgatgatgtaggatcgggttaaaaataatgaataagattttattgccatgcgttttggtcttcttcaatatggaacaatgtcatctcccatctttgttttgtctttaaagacattgatatttttgaagagtttgtgtcagttgtctatagaatatgccacaatatgagtttgtctgactgttttc------ttatactccaattaaacatttttggcaataatactacataggtTACACTAATAGAGTGGGCAAATAGCTATCCAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2447053 346 -   3067355 gaattaacgttgaaccaataatataa--------agcccatattcaattttcccacttgtttcaaatgtcttttatagttgt---------ttttgtt----ttgttgatgatgtaggatccagtcaaaaataatgaataacattttattgccatgcgttttggtcttcttcagtataggacaatgtcatctcccctttttgttttgtctttaaagacactgatatttttgaagagtttgtgtcagttgtctatggaatatgccacaatatgggtttgtctgactgttttc------ttatactccaattaaacatttttgacaataatactacataggtTACACTAATAGAGTGGGCAAATAGCAATCCAAA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2146937 357 -   2232465 GAACTAACAAAAAAGAAGAAAGAAAAAATAACGGAGTCTATATTCAATTTTCCCAACTATTTTAAAACTCATTTAAAGTTGTTTTAGCTTTTTTTGTTATTGCTGCTGATGGTTTCAgatccagtcaagaatcacagatgacattttattgtcatctattttggtcttcttcaatctgaagcagtaacatcccccacctttgttttgtctttaaaaatacagatatttttcaagagtttgtgtcagttggccataaaatgtgccacaatctgggattgtctgattatttccttatgattatattccaactaaacatcttcagcaacaaaactatataagtCACATCA--AGA--------------AACTAGA
i otoGar3.GL873742         I 18754 C 0
e mm10.chr17               57767428 6323 -  94987271 I
e dasNov3.JH569098           202692 20511 -    254539 I
e proCoq1.NW_012152574v1     456501 8284 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=1196888.000000
s hg38.chr6_GL000254v2_alt   703142 269 +   4827813 TTATTCTACTCCATTCTGTTCCCTGTAACATTAATGGCATCATCTTCAGCCATAAC----AGGGCTACACTCTGGGAGTAGATGACTGATGAGCTGAGAGAAAACA-GATTCCTGAGGAA-TTC-TGGATCAGAGCAGCCATATTTCCCTGAACTACAAATCTTTAGACATTTAAGTGAGAG----A-TAAATTTTCATTCTCTTTGAGCCATTGGCA--------TTTCCATTACTTTCAGCCAAATCTAATAAATAAATGAAATGATAAAATATAAAGGAGTCAGAA
s panTro5.chr6             29676601 269 + 175400573 TTATTCTACTCCATTCTGTTCCCTGTAACATTAATGGCATCATCTTCAGCCATAAC----AGGGCTACACTCTGGGAGTAGATGACTGATgagctgagagaaaaca-gattcctgaggaa-ttc-tggatcagagcagccatatttccctgaactacaaatctttagacatttaagtgagag----a-taaattttcattctctttgagccattggca--------tttccattactttcagccaaaTCTAATAAATAAATGAAATGATAAAATATAAAGGAGTCAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29907343 269 + 173848474 TTATTCTACTCCATTCTGTTCCCTGTAACATTAATGGCATCATCTTCAGCCATAGC----AGGGCTACACTCTGGGAGTAGATGACTGATGAGCTGAGAGAAAACA-GATTCCTGAGGAA-TTC-TGGATCAGAGCAGCCATATTTCCCTGAACTACAAATCTTTAGACATTTAAGTGAGAG----A-TAAATTTTCATTCTCTTTGAGCCATTGGCA--------TTTCCATTACTTTCAGCCAAATCTAATAAATAAATGAAAGGATAAAATATAAAGGAGTCAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5717686 269 +   6154872 TTATTCTACTCCATTCTGTTCCCTGTAACATTAATGGCATCATCTTCAGCCATAAC----AGGGCTACACTCTGGGAGTAGATGACTGATGAGCTGAGAGAAAACA-GATTCCTGAGGAA-TTC-TGGATCAgagcagccatatttccctgaactacaaatctttagacatttaagtgagag----a-gaaattttcattctctttgagccattggca--------tttccattactttcagccaaatctaatAAATAAATGAAAGGATAAAATATAAAGGAGTCAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120       8792 268 +     27237 TTATTCTACTCCATTTTGTTCCCTGTAACGTTAATGCCATTATCTTCAACCATAAG----AGGGCTACACTCCTGGAATAGATGACTAATGATGTGAGAGAAAACT-GATTCCTGAGGAC-TTC-TGGATCAGAACAGCCATA-TTCCCTGAACTACAAAACTTTAGACATTTAAGTGAGAG----A-TAAATTTTCATTCTGTTTGAGCCATTGGCA--------TTTCCATTATTTTCAGCCAAATCTAATAAATAAATGAAAGGAGAAAATATAAAGGAATCAGAA
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2636707 268 -   2996164 TTATTCTACTCCATTTTGTTCCCTGTAACATTAATGCCATTATCTTCAACCATAAG----AGGGCTACACTCCTGGAATAGATGACTAATGATGTGAGAGAAAACT-GATTCCTGAGGAC-TTC-TGGATCAGAACAGCCATA-TTCCCTGAACTACAAAACTTTAGACATTTAAGTGAGAG----A-TAAATTTTCATTCTGTTTGAGCCATTGGCA--------TTTCCATTATTTTCAGCCAAATCTAATAAATAAATGAAAGGAGAAAATATAAAGGAATCAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     388356 268 +    766320 TTATTCTACTCCATTTTGTTCCCTGTAACATTAATGCCATTATCTTCAACCATAAG----AGGGCTACAATCCTGGAATAGATGACTAATGATGTGAGAAAAAACT-GATTCCTGAGGAC-TTC-TGGGTCAGAACAGCCATA-TTCCCTGAACTACAAAACTTTAGACATTTAAGTGAGAG----A-TAAATTTTCATTCTATTTGAGCCATTGGCA--------TTTCCATTACTTTCAGCCAAATCTAATAAATAAATGAAAGGAGAAAATATAAAGGAATCAGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28846177 268 -  71996105 TTATTCTACTCCATTTTGTTCCCTGTAACGTTAATGCCATTATCTTCAACCGTAAG----AGGGCTACACTCCTGGAATAGATGACTAATGATGTGAGAGAAAACT-GATTCCTGAGGAC-TTC-TGGATCAGAACAGCCATA-TTCCCTGAACTACAAAACTTTAGACATTTAAGTGAGAG----A-TAAATTTTCATTCTGTTTGAGCCATTGGCA--------TTTCCATTATTTTCAGCCAAATCTAATAAATAAATGAAAGGAGAAAATATAAAGGAATCAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1       9490 268 +    290775 TTATTCTACTCCATTTTGTTCCCTGTAACATTAATGCCATTATCTTCAACCATAAG----AGGGCTACAATCCTGGAATAGATGACTAATGATGTGAGAAAAAACT-GATTCCTGAGGAC-TTC-TGGGTCAGAACAGCCATA-TTCCCTGAACTACAAAACTTTAGACATTTAAGTGAGAG----A-TAAATTTTCATTCTATTTGAGCCATTGGCA--------TTTCCATTACTTTCAGCCAAATCTAATAAATAAATGAAAGGAGAAAATATAAAGGAATCAGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2447399 268 -   3067355 TTATTCTACTCCATTTTGTTCCCTGTAACATTAATGCCATTATCTTCAACCATAAG----AGGGCTACACTCCAGGAATAGATGACTAATGATGTGAGAGAAAACT-GATTCCTGAGGAC-TTC-TGGATCAGAACAGCCATA-TTCCCTGAACTACAAAACTTTAGACATttaagtgagag----a-taaattttcattctgtttgagccattggca--------tttccattactttcagccaaaTCTAATAAATAAATGAAAGGAGAAAATATAAAGGGATCAGAA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2147294 254 -   2232465 TTATTCTACACCATTCTGTTCCCTGTGACACTGATGCCATCATCTG-AATCCCAAA----ACAAACATACTCCAGGAATAG-------ATGAACTGAAATAAAATTAGATTCTTGAAGACTTTT-TGGATCAGAACAATCATATTGCCCTGAACTTCAA--------GCATTTAAGTGACAGAAAAA-TAAATGGTCATCTTTTTTCAGCTACCAGTA--------TGTCCATTACT---AAGCAAATACaaagaataa--gaaaggagcaaatacaaaggaataagaa
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           223203 246 -    254539 ttttcctactccatcctgccccatgtaacaccaatgacaccatcttaaaccataaggtcaagggtcacaatctagggacaggagagtaatgagctgaaaagaaaccagatgcctgaagac-tTCATGGATCGGAGTAGTCATT-----------------------------TAAATGAAAA----AGTCCGCTTTTATCCTCTTTGAGGTACTGGTATTTTTAGTTTTCCATTACTATCAGATAAACCTAGTG---AAATGACAG------ATACAAACAAAATTTAA
i dasNov3.JH569098         I 20511 C 0
e mm10.chr17               57767428 6323 -  94987271 I
e proCoq1.NW_012152574v1     456501 8284 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=409710.000000
s hg38.chr6_GL000254v2_alt   703411  80 +   4827813 GAAAACTA-------------------AGTACG---------------------------------AAATCC-----------------------------------------------------AGTTTATGTAAACCCTGAACTTCTAGTTATATAAATTAATAAGTAAA-TTTATTACTTAAA
s panTro5.chr6             29676870  80 + 175400573 GAAAACTA-------------------AGTACG---------------------------------AAATCC-----------------------------------------------------AGTTTATGTAAACCCTGAACTTCTAGTTATATAAATTAATAAGTAAA-TTTATTACTTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29907612  80 + 173848474 GAAAACTA-------------------AGTACG---------------------------------AAATCC-----------------------------------------------------AGTATATGTAAACCCTGAACTTCTAGTTATATAAATTAATAAGTAAA-TTTATTACTTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5717955  80 +   6154872 GAAAACTA-------------------AGTATG---------------------------------AAATCC-----------------------------------------------------AGTATATGTAAACCCTGAACTTCTAGTTATATAAATTAATAAGGAAA-TTTATTACTTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120       9060  80 +     27237 GAAAACTA-------------------AGTAGG---------------------------------AGATCC-----------------------------------------------------AGTATATGTAAaccttgaacttctagttatgtaaattaataagtaaa-attattacttaaa
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2636975  80 -   2996164 GAAAACTA-------------------AGTAGG---------------------------------AGATCC-----------------------------------------------------AGTATATGTAAACCTTGAACTTCTAGTTATGTAAATTAATAAGTAAA-ATTATTACTTAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     388624  80 +    766320 GAAAACTA-------------------AGTAGG---------------------------------AGATCC-----------------------------------------------------AGTGTATGTAAACCTTGAACTTCTAGTTATATAAATTAATAAGTAAA-ATTATTACTTAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28846445  80 -  71996105 GAAAACTA-------------------AGTAGG---------------------------------AGATCC-----------------------------------------------------AGTATATGTAAACCTTGAACTTCTAGTTATGTAAATTAATAAGTAAA-ATTATTACTTAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1       9758  80 +    290775 GAAAACTA-------------------AGTAGG---------------------------------AGATCC-----------------------------------------------------AGTATATGTAAaccttgaacttctagttatataaattaataagtaaa-attattacttaaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2447667  80 -   3067355 GAAAACTA-------------------AGTAGG---------------------------------AGATCC-----------------------------------------------------AGTATATGTAAACCTTGAACTTCTAGTTATATAAATTAATAAGTAAA-ATTATTACTTAAA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     464785  80 +    730504 GAAAACTA-------------------AGTAGG---------------------------------AAATCT-----------------------------------------------------GGTATAAGTAACTCCTAAACTTCTAGTTATATTAATTAATAAATAGA-TTTATTATTTAAA
i proCoq1.NW_012152574v1   I 8284 I 69
s otoGar3.GL873742          2147548 186 -   2232465 agaaactaaggtgcctgtggctcaaggagtagggcaccagccccatatgctgaaggtggtgggttcaaacctaaccctggccaaaaactccaaaaaaaaaaaaaagaaaagaaagaaaCTAAGTAGGTATAAGTAACACCTAAACTTCTATTTATATGAATTATTAAATGGATTTTTTTATTTAAA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           223449  80 -    254539 GGAAACTA-------------------AGTAGG---------------------------------AGATCT-----------------------------------------------------GGTATAagttaacactgaacttccagttacattagtcaataaatgta-cttattgtttaaa
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57767428 6323 -  94987271 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=273628.000000
s hg38.chr6_GL000254v2_alt   703491 67 +   4827813 CCCGTTGGAG-TTGGGGCTTGTTAT---AATGG-TTGGT--ATGTCTTGAAAACATTCTATTTGACACACAGCT
s panTro5.chr6             29676950 67 + 175400573 CCCGTTGGAG-TTGGGGCTTGTTAT---AATGG-TTGGT--ATGTCTTGAAAACATTCTATTTGACACACAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29907692 67 + 173848474 CCCATTGGAG-TTGGGGCTTGTTAT---AATGG-TTGGT--ATGTCTTGAAAACATTCTATTTGACACACAGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5718035 68 +   6154872 CCCGTTGGAG-TTGGGGCTTGTTAT---AATGGTTTGGT--ATGTCTTGAAAACATTCTATTTGACACACAGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120       9140 67 +     27237 ccagtttgag-ttggtgcttgttgt---aatgg-ttggt--gtgtcttgaaaacattctatttgacacaCAGCT
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2637055 67 -   2996164 CCAGTTTGAG-TTGGTGCTTGTTGT---AATGG-TTGGT--GTGTCTTGAAAACATTCTATTTGACACACAGCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     388704 66 +    766320 CCAGTTTAAG-TTGG-GCTTGTTGT---AATGG-TTGGT--GTGTCTTGAAAACATTCTATTTGACACACAGCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28846525 67 -  71996105 CCAGTTTGAG-TTGGTGCTTGTTGT---AATGG-TTGGT--GTGTCTTGAAAACATTCTATTTGACACACAGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1       9838 66 +    290775 ccagtttgag-ttgg-gcttgttgt---aatgg-ttggt--gtgtcttgaaaacattctatttgacacaCAGCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2447747 67 -   3067355 CCAGTTTGAG-TTGGGGCTTGTTGT---AATTG-TTGAT--GTGTCTTGAAAACATTCTATTTGACACCTAGCT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2147734 73 -   2232465 CCAGTTGGAGTTTGGAGCTTATTGTAACAATGA-TTGTTACATATCTTGAACACATCCTATCTGACATACAGGC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           223529 45 -    254539 ccagtttgat-tt--------ttgg---gtttG-TTGTT---------GAAAAC-------CTAACACATAGGC
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57767428 6323 -  94987271 I
e proCoq1.NW_012152574v1     464865 69 +    730504 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=281601.000000
s hg38.chr6_GL000254v2_alt   703558 45 +   4827813 TTTATCACATCTATGAAAATGTATAAAAACACAGAAGAAACAAAT----
s panTro5.chr6             29677017 45 + 175400573 TTTATCACATCTATGAAAATGTATAAAAACACAGAAAAAACAAAT----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29907759 45 + 173848474 TTTATCACATCTATGAAAATGTATAAAAACACAGAAGAAACAAAT----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5718103 45 +   6154872 TTTATCACATCTATGAAAATTTATAAAAACACAGAAGAAACAAAT----
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120       9207 45 +     27237 TTTATCATATCTATGAAAATGTATAAAAACACAGAAGCAACAAAT----
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2637122 45 -   2996164 TTTATCATATCTATGAAAATGTATAAAAACACAGAAGCAACAAAT----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     388770 45 +    766320 TTTATCATATCTATGAAAATGTATAAAAACACAGAAGCAACAAAT----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28846592 45 -  71996105 TTTATCATATCTATGAAAATGTATAAAAGCACAGAAGCAACAAAT----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1       9904 45 +    290775 TTTATCATATCTATGAAAATGTATAAAAACACAGAAGCAACAAAT----
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2447814 45 -   3067355 TTTATCATATCTATGAAAATGTATAAAAACACAGAAGCAACAAAT----
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     464934 45 +    730504 TTTATCACATCTATGAAAATGTGTAAGAACACAGAAGAAACAAAT----
i proCoq1.NW_012152574v1   I 69 C 0
s otoGar3.GL873742          2147807 45 -   2232465 TCTATCACATCTTTGAAAATGTATAAAAACACAGAAGAAACAAAT----
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           223574 49 -    254539 TTTATCACATATATGAAAATGTGTAAGAACATAGAAAAAAAAAACAAAT
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57767428 6323 -  94987271 I
e canFam3.chr35            26171997 4719 +  26524999 I

a score=182073.000000
s hg38.chr6_GL000254v2_alt   703603 46 +   4827813 CAAATAATAGATACCAATGATAAAAATGC------AAAGAAAGAT-TTGTATA
s panTro5.chr6             29677062 46 + 175400573 CAAATAATAGATACCAACGATAAAAATGC------AAAGAAAGAT-TTGTATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29907804 47 + 173848474 CAAATAATAGATACCAACGATAAAAATGC------GAAGAAATATCTTGTATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5718148 46 +   6154872 CAAATAATAGATACCAACGATAAAAATGC------AAAGAAAGGT-TTGTATA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120       9252 48 +     27237 CAAATAATAGGTACAAATGACAAAAATGC-----AAAAAAAAGATATTGTATA
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2637167 48 -   2996164 CAAATAATAGGTACAAATGACAAAAATGC-----AAAAAAAAGATATTGTATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     388815 50 +    766320 CAAATAACAGGTACAAATGACAAAAATGC---AAAAAAAAAAGATATTGTATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28846637 53 -  71996105 CAAATAATAGGTACAAATGACAAAAATGCAAAAAAAAAAAAAGATATTGTATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1       9949 49 +    290775 CAAATAACAGGTACAAATGACAAAAATGC----AAAAAAAAAGATATTGTATA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2447859 50 -   3067355 CAAATAATAGGTACAAATGACAAAAATGC---AAAAAAAAAAGATATTGTATA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     464979 44 +    730504 CAAACAATAAGTCCAAATGATAATACA---------AAGAAAGATCTTGTATa
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2147852 41 -   2232465 -----AATAAATCCAAGtaataataaaac-------aaaaaatattttgtata
i otoGar3.GL873742         C 0 I 268
s canFam3.chr35            26176716 49 +  26524999 caaat--tgaacaccaataaaaaataaatttatttaagaaataaCTTTCTG--
i canFam3.chr35            I 4719 I 3
s dasNov3.JH569098           223623 47 -    254539 CAAACAATAAGTCCAAATAATGATAACAT------AAGGGAAACTCTTTTATA
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57767428 6323 -  94987271 I

a score=577081.000000
s hg38.chr6_GL000254v2_alt   703649 112 +   4827813 ATAAATGAAAAAGAAA------TCAAAGCAAGAAAAATTAGTGACAATTG------TATAAGAAAATGACATTTAGCACCTCAATTAGGTC-AAAACATGTTTATTTCTCTTTTATATTATTAGT
s panTro5.chr6             29677108 112 + 175400573 ATAAATGAAAAAGAAA------TCAAAGCAAGAAAAATTAGTGACAATTG------TATAAGAAAATGACATTTAGCACCTCAATTAGGTC-AAAACATGTTTATTTCTCTTTTATATTATTAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29907851 112 + 173848474 ATAAATGAAAAAGAAA------TCAAAGCAAGAAAAATTAGTGACAATTG------TATAAGAAGATGACATTTAGCAGCTCAATTAGGTC-AAAACATGTTTATTTCTCTTTTATATTATTAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5718194 112 +   6154872 ATAAATGAAAAAGAAA------TCAAAGCAAGAAAAATTAGTGACAATTG------TATAAGAAAATGACATTTAGCAGCTCAATTAGGTC-AAAACATGTTTATTTCTCTTTTATATTATTAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120       9300 112 +     27237 ATAAATGAAAAAGAAA------TTAAAGCAAGAAAAATTAGTGACAGTTG------TCTAAGAAAATGACATTTAGCAGCTCAATAGGGTC-AAAACATGTTTATTTCTCTTTTATATTATTAGT
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2637215 112 -   2996164 ATAAATGTAAAAGAAA------TTAAAGCGAGAAAAATTAGTGACAGTTG------TCTAAGAAAATGACATTTAGCAGCTCAATAGGGTC-AAAACATGTTTATTTCTCTTTTATATTATTAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     388865 110 +    766320 ATAAATGAAAA--AAC------TCAAAGCGAGAAAAATTAGTGACAGTTG------TCTAAGAAAATGACATTTAGCAGCTCAATAGGGTC-AAAACATGTTTATTTCTCTTTTATATTATTAGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28846690 112 -  71996105 ATAAATGAAAAAGAAA------TCAAAGCGAGAAAAATTAGTGACAGTTG------TCTAAGAAAATGACATTTAGCAGCTCAATAGGGTC-AAAACATGTTTATTTCTCTTTTATATTATTAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1       9998 110 +    290775 ATAAATGAAAA--AAC------TCAAAGCGAGAAAAATTAGTGACAGTTG------TCTAAGAAAATGACATTTAGCAGCTCAATAGGGTC-AAAACATGTTTATTTCTCTTTTATATTATTAGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2447909 112 -   3067355 ATAAATGAAAAAGAAA------TCAAAGCAAGAAAAATTAGTGAGAGTTG------TCTAAGAAAATGACATTTAGCAGCTCAATAGGGTC-AAAACATGTTTATTTCTCTTTTATATTATTAGT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     465023 111 +    730504 ataaatgaaaaaaaaaga-------aagaaagaaaAATTAGGGAAAATTT------TCCAAGAAAATGGCATTTATTAGCTCACTAAGATCAAAAACATGTTTATTTC-CTTTTATATTCTTGGT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2148161 116 -   2232465 ataaaataaaataaaaaatattttgtataaatgaaaaatatagaaaaaat------tCCACAAAAATGATAATTTTTATTCTACTAATATCAAAAACATGTT--ATTC-CTCTTGTATTCTTAGT
i otoGar3.GL873742         I 268 C 0
s canFam3.chr35            26176768 110 +  26524999 ATAAATTAAA---AAA------TCAAAA-AAGAGAAGTTAGGGATAGTTTCCCCCCCCCAAAAAAATGACAT----CAGCT-ACTAATGTCAAAAGTATATATATTTCTCTTTTCTATTCTCAGT
i canFam3.chr35            I 3 C 0
s dasNov3.JH569098           223670 103 -    254539 ATCAACAAAA---AGA------TCAAAGCAAGAGAAACCAGGGAAAGTTT------TCCAAGAAAACTACATGTATAAGATCACGAAGGCC-AAAA------TGTTTCTCTTTTATATTCTTAAT
i dasNov3.JH569098         C 0 I 623
e mm10.chr17               57767428 6323 -  94987271 I

a score=24729.000000
s hg38.chr6_GL000254v2_alt   703761 6 +   4827813 TACCTG
s panTro5.chr6             29677220 6 + 175400573 TACCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29907963 6 + 173848474 TACCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5718306 6 +   6154872 TACCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120       9412 6 +     27237 TTTCTG
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2637327 6 -   2996164 TTTCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     388975 6 +    766320 TTTCTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28846802 6 -  71996105 TTTCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      10108 6 +    290775 TTTCTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2448021 6 -   3067355 TTTCTG
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     465134 6 +    730504 TCTGTG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2148277 6 -   2232465 TCTCTG
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35            26176878 6 +  26524999 GCTCTG
i canFam3.chr35            C 0 C 0
e mm10.chr17               57767428 6323 -  94987271 I
e dasNov3.JH569098           223773 623 -    254539 I

a score=249324.000000
s hg38.chr6_GL000254v2_alt   703767 44 +   4827813 TAGAATCAATAAAACCT-------GCAAGG----GACCCTATAAATAGTTATCAA
s panTro5.chr6             29677226 44 + 175400573 TAGAATCAATAAAACCT-------GCAAGG----GACCCTATAAATAGTTATCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29907969 44 + 173848474 TAGAATCAATAAAACCT-------GCAAGG----GACCCTATAAATAGTTATCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5718312 44 +   6154872 TAGAATCAATAAAACCT-------GCAAGG----GACCCTATAAATAGTTATCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120       9418 44 +     27237 TAGAATCACTAAAACCT-------GCAAGG----GACTCTATAAGTGGTTATCAA
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2637333 44 -   2996164 TAGAATCACTAAAACCT-------GCAAGG----GACTCTATAAGTGGTTATCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     388981 44 +    766320 TAGAATCACTAAAACCT-------GCAAGG----GACTCTATAAATGGTTATCAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28846808 44 -  71996105 TAGAATCACTAAAACCT-------GCAAGG----GACTCTATAAGTGGTTATCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      10114 44 +    290775 TAGAATCACTAAAACCT-------GCAAGG----GACTCTATAAATGGTTATCAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2448027 44 -   3067355 TAGAATCACTAAAACCT-------GCAAGG----GACTCTATAAATGGTTATCAA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     465140 44 +    730504 TAGAGTGACTGAAATAT-------ACAAGG----GACTCTATGAATGGTTATCAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2148283 55 -   2232465 TAGAATGACTGAAATATCTCATACACAAGGGCCTGCCTTTATGAATGGTTACCAA
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35            26176884 40 +  26524999 TGGAATGACT-AAATAG-------ATAAGT----GGTTGAGTGAA---TTCTCAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH569098           224396 44 -    254539 TAGAATGATTAAAATAT-------ACAAGG----GACTCTACGAAAGATTATCGA
i dasNov3.JH569098         I 623 C 0
e mm10.chr17               57767428 6323 -  94987271 I

a score=4300231.000000
s hg38.chr6_GL000254v2_alt   703811 744 +   4827813 ATAAATTGATTACTGGATTATATCAA---------TATACATAAGAAGGGTAAAATTGCATTATT----------------ACTTTTTGTAGATGTACTAGAACATCTACAGTGATGGG-AAAAAA----TCATGAGAAAA---AAGAAGAAAATTAAAATGGTTGAACCAGAGA---TATGGGAGAACTAAG--AGAAACCAATAGCTCTGGATATATTCTTTGAAATGTTCTTAACAGGTCATTCTGTATTTCTTGCAATCTAAGAAACAGA-TTCAAAATAACAGATTAATTGGTTTTGTGAAGCATTCTCCCCATTGGAAAGCCAAGAATGCTTGGAGACTCAGATCCTCAGAGAGCTTAAAGAGAGACAACAAACCTAAGAGAGGCTTCCTCAAGAGGGATCCACTATGTAGATAAAAAAGAAGATAAGCAAGTCA-CAAATGCCATCTGCC---TTCACTGGTTATTTCTCCAAATAGAAAATAGAAAGACACCTTTGAGATAATATCTTCTGGAAAACACTGAAAGAGCCCCCAGAGGAGAATGAACCAAGGGCTCTTCAACTGCAAA---AGGATATCAGTGT-GTGG---ACTT---GTAT---TTCTAATAC--ACAACCTTGAATATGGCTGGA------------ATATTGAATTTGTGTATATATTCAAGTGTATC--TTTGGGTGTTTATAGTTTTATGTTCAGTGTATTTAGACTTTTACTGTTATCTGTAATAATGCCAA-----T--------AGAATACATG-----------ATTTGCAACTTTAGATAAATCTGGCATCTGGGAATAT-TAGGCTATTCTT
s panTro5.chr6             29677270 744 + 175400573 ATAAATTGATTACTGGATTATATCAA---------TATACATAAGAAGGGTAAAATTGCATTATT----------------ACTTTTTGTAGATGTACTAGAACATCTACAGTGATGGG-AAAAAA----TCATGAGAAAA---AAGAAGAAAATTAAAATGGTTGAACCAGAGA---TATGGGAGAACTAAG--AGAAACCAATAGCTCTGGATATATTCTTTGAAATGTTCTTAACAGGTCATTCTGTATTTCTTGCAATCTAAGAAACAGA-TTCGAAATAACAGATTAATTGGTTTTGTGAAGCATTCTCCCCATTGGAAAGCCAAGAATGCTTGGAGACTCAGATCCTCAGAGAGCTTAAAGAGAGACAACAAACCTAAGAGAGGCTTCCTCAAGAGGGATCCACTATGTAGATAAAAAAGAAGATAAGCAAGTCA-CAAATGCCATCTGCC---TTCACTGGTTATTTCTCCAAATAGAAAATAGAAAGACACCTTTGAGATAATATCTTCTGAAAAACACTGAAAGAGCCCCCAGAGGAGAATGAACCAAGGGCTCTTCAACTGCAAA---AGGATATCAGTGT-GTGG---ACTT---GTAT---TTCTAATAC--ACAACCTTGAATATGGCTGGA------------ATATTGAATTTGTGTATATATTCAAGTGTATC--TTTGGGTGTTTATAGTTTTATGTTCAGTGTATTTAGACTTTTACTGTTATCTGTAATAATGCCAA-----T--------AGAATACATG-----------ATTTGCAACTTTAGATAAATCTGGCATCTGGGAATAT-TAGGCTATTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29908013 744 + 173848474 ATAAATTGATTACTGGATTATATCAA---------TATAAATAAGAAGGGTAAAATTGCATTATT----------------ACTTTTTGTAGATGTACTAGAACATCTACAGTGATGGG-AAAAAA----TCATGAGAAAA---AAGAAGAAAACTAAAATGGTTGAACCAGAGA---TATGGGAGAACTAAG--AGAAACCAATAGCTCTGGATATATTCTTTGAAATGTTCTTAACAGGTCATTCTGTATTTCTTGCAATCTAAGAAACAGA-TTCAAAATAACAGATTAATTGGTTTTGTGAAGCATTCTCCCCATTGGAAAGCCAAGAATGCTTGGAGACTCAGATCCTCAGAGAGCTTAAAGAGAGACAACAAACCTAAGAGAGGCTTCCTCAAGAGGGATCCACTATGTAGATAAAAAAGAAGATAAGCAAGTCA-CAAATGCCATCTGCC---TTCACTGGTTATTTCTCCAAATAGAAAATAGAAAGACACCTTTGAGATAATATCTTCTGGAAAACACTGAAAGAGCCCCCAGAGGAGAATGAACCAAGGGCTCTTCAACTGCAAA---AGGATATCAGTGT-GTGG---ACTT---GTAT---TTCTAATAC--ACAACCTTGAATATGGCTGGA------------ATATTGAATTTGTGTATATATTCAAGTGTATC--TTTGGGTGTTTATAGTTTTATGTTCAGTGTATTTAGACTTTTACTGTTATCTGTAATAATGCCAA-----T--------AGAATACATG-----------ATTTGCAACTTTAGATAAATCTGGCATCTGGGAATAT-TAGGCTATTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5718356 744 +   6154872 ATAAATTGATTACTGGATTATATCAA---------TATAAATAAGAAGGGTAAAATTGCATTATT----------------ACTTTTTGCAGATGTACTAGAACATCTACAGTGATGGG-AAAAAA----TCATGAGAAAA---AAGAAGAAAATTAAAATGGTTGAACCAGAGA---TATGGGAGAACTAAG--AGAAACCAATAGGTCTGGATATATTCTTTGAAATGTTCTTAACAGGTCATTCTGTATTTCTTGCAATCTAAGAAACAGA-TTCAAAATAACAGATTAATTGGTTTTGTGAAGCATTCTCCCCATTGGAAAGCCAAGAATGCTTGGAGACTCAGATCCTCAGAGAGCTTAAAGAGAGACAACAAACCTAAGAGAGGCTTCCTCAAGAGGAATCCACTATGTAGATAAAAAAGAAGATAAGCAAGTCA-CAAATGCCATCTGCC---TTCACTGGTTATTTCTCCAAATAGAAAATAGAAAGACACTTTGGAGATAATATCTTCTGGAAAACACTGAAAGAGCCCCCAGAGGAGAATGAACCAAGGGCTCTTCAACTACAAA---AGGATATCAGTGT-GTGG---ACTT---GTAT---TTCTAATAC--ACAACCTTGAATATGGCTGGA------------ATATTGAATTTATGTATATATTCAAGTGTATC--TTTGGGTGTTTATAGTTTTATGTTCAGTGTATTTTGACTTTTACTGTTATCTGTAATAATGCCAA-----T--------AGAATACATG-----------ATTTGCAACTTTAGATAAATCTGGCATCTGGGAATAT-TAGGCTATTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120       9462 738 +     27237 ATGAATTGATTACTGGATTATATCAA---------TAGCAATAGGAAGGGTAAAATTTCATTACT----------------ACTTTTTATAGATGTACTAGAACATCTACAGTGATGGG-AAAAAA-----CATGAGAAAA---AAGAAGAAAATTAAAATGGTTAAACCAGAGATATTATGGGAGAACTAAG--AGAAACCAATAGCTCTGGATATATTCTTTGAAATGTTCTTAACAGGTCATTCTGTATTTCTTGAAATCTAAGAAACAGACTCCAAAATAACAGATTAATTGGTTATATGAAGCATTCTCCCCATTGGAAAGCCAAGAATGCTTGGAGACTCAGATCCTCAGAGACCTTAAAGAGAGACAACAAACCTAAGACAGCCTTCCTCAAGAGGGATTCACTATGTAGAT-AAAAGGAAAATAAGCAAGTCA-CAGATGCCATCTGCCTTTTTCTCTGGTTATTTCTCC-------AAATAGAAAGATACTTTTGAGATAATGTCTTCTGGAAAACACTGAAAGAGCCCCCAGAATAGAATGAATCAAGGGCTCTTCAATTGCAAA---AGAATATCAGTGT-GTGG---ACCT---GTAT---TTCTAATAC--ACAGCCTTGAATGTGGTTGGA------------ATGTTGAATTTATGTATATATTCAAGTGTATC--TTTGGGTGTTTGTAGTTTTATGTTAAGTGTATTTTGACTT----TGTTATCTGTAATAATACCAA-----T--------ATAATACATG-----------ATTTGTGACTTCAGATAAATTTGGCATCTGAGAATAT-TGGGCTCTTCTT
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2637377 738 -   2996164 ATGAATTGATTACTGGATTATATCAA---------TAGCAATAGGAAGGGTAAAATTTCATTACT----------------ACTTTTTATAGATGTACTAGAACATCTACAGTGATGGG-AAAAAA-----CATGAGAAAA---AAGAAGAAAATTAAAATGGTTAAACCAGAGATATTATGGGAGAACTAAG--AGAAACCAATAGCTCTGGATATATTCTTTGAAATGTTCTTAACAGGTCATTCTGTATTTCTTGAAATCTAAGAAACAGACTCCAAAATAACAGATTAATTGGTTATATGAAGCATTCTCCCCATTGGAAAGCCAAGAATGCTTGGAGACTCAGATCCTCAGAGACCTTAAAGAGAGACAACAAACCTAAGACAGCCTTCCTCAAGAGGGATTCACTATGTAGAT-AAAAGGAAAATAAGCAAGTCA-CAGATGCCATCTGCCTTTTTCTCTGGTTATTTCTCC-------AAATAGAAAGATACTTTTGAGATAATGTCTTCTGGAAAACACTGAAAGAGCCCCCAGAATAGAATGAATCAAGGGCTCTTCAATTGCAAA---AGAATATCAGTGT-GTGG---ACCT---GTAT---TTCTAATAC--ACAGCCTTGAATGTGGTTGGA------------ATGTTGAATTTATGTATATATTCAAGTGTATC--TTTGGGTGTTTGTAGTTTTATGTTAAGTGTATTTTGACTT----TGTTATCTGTAATAATACCAA-----T--------ATAATACATG-----------ATTTGTGACTTCAGATAAATTTGGCATCTGAGAATAT-TGGGCTCTTCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     389025 738 +    766320 ATGAATTGATTACTGAATTATATCAA---------TAGCAATAGGAAGGGTAAAATTGCATTACT----------------ACTTTTTATAGCTGTACTAGAACATCTACAGTGATGGG-AAAAAA-----CATGAGAAAA---AAGAAGAAAATTAAAATGGTTAAACCAGAGATATTATGGGAGAACTAAG--AGAAACCAATAGCTCTGGATATATTCTTTGAAATGTTCTTAACAGGTCATTCTGTATTTCTTGAAATTTAAGAAACAGACTCCAAAATAACAGATTAATTGGTTATATGAAGCATTCTCCCCATTGGAAAGCCAAGAATGCTTGGAGACTCAGATCCTCAGAGACCTTAAAGAGAGACAACAAACCTAAGAGAGCCTTCCTCAAGAGGGATTCACTATGTAGAT-AAAAGGAAAATAAGCAAGTCA-CAGATGCCATCTGCCTTTTTCTCTGGTTATTTCTCC-------AAATAGAAAGATACTTTTGAGATACTGTCTTCTGGAAAACACTGAAAGAGCCCCCAGAATAGAATGAATCAAGGGCTCTTCAATTGCAAA---AGGATATCAGTGT-GTGG---ACCT---GTAT---TTCTAATAC--ACAGCCTTGAATGTGGTTGGA------------ATGTTGAATTTATGTATATATTCAAGTGTATC--TTTGGGTGTTTGTAGTTTTATGTTAAGTGTATTTTGACTT----TGTTATCGGTAATAATGCCAA-----T--------ATAATACACG-----------ATATGTGACTTCAGATAAATTTGGCATCTGAGAATAT-TGGGCTCTTCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28846852 739 -  71996105 ATGAATTGATTACTGGATTATATCAA---------TAGCAATAGGAAGGGTAAAATTGCATTACT----------------ACTTTTTATAGATGTACTAGAACATCTACAGTGATGGGAAAAAAA-----CATGAGAAAA---AATAAGAAAATTAAAATGGTTAAACCAGAGATATTATGGGAGAACTAAG--AGAAACCAATAGTTCTGGATATATTCTTTGAAATGTTCTTAACAGGTCATTCTGTATTTCTTGAAATCTAAGAAACACACTCCAGAATAACAGATTAATTGGTTATATGAAGCATTCTCCCCATTGGAAAGCCAAGAATGCTTGGAGACTCAGATCCTCAGAGACCTTAAAGAAAGACAACAAACCTAAGAGAGCCTTCCTCAAGAGGGATTCACTATGTAGAT-AAAAGGAAAATAAGCAAGTCA-CAAATGCCATCTGCCTTTTTCTCTGGTTATTTCTCC-------AAATAGAAAGATACTTTTGAGATAATGTCTTCTGGAAAACACTGAAAGAGCCCCCAGAATAGAATGAATCAAGGGCTCTTCAATTGCAAA---AGGATATCAGTGT-GTGG---ACCT---ATAT---TTCTAATAC--ACAGCCTTGAATGTGGTTGGA------------ATGTTGAATTTGTGTATATATTCAAGTGTATC--TTTGGGTGTTTGTAGTTTTATGTTAAGTGTATTTTGACTT----TGTTATCTGTAATAATACCAA-----T--------ATAATACATG-----------ATATGTGACTTCAGATAAATTTGGCATCTGACAATAT-TGGGCTCTTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      10158 738 +    290775 ATGAATTGATTACTGAATTATATCAA---------TAGCAATAGGAAGGGTAAAATTGCATTACT----------------ACTTTTTATAGCTGTACTAGAACATCTACAGTGATGGG-AAAAAA-----CATGAGAAAA---AAGAAGAAAATTAAAATGGTTAAACCAGAGATATTATGGGAGAACTAAG--AGAAACCAATAGCTCTGGATATATTCTTTGAAATGTTCTTAACAGGTCATTCTGTATTTCTTGAAATTTAAGAAACAGACTCCAAAATAACAGATTAATTGGTTATATGAAGCATTCTCCCCATTGGAAAGCCAAGAATGCTTGGAGACTCAGATCCTCAGAGACCTTAAAGAGAGACAACAAACCTAAGAGAGCCTTCCTCAAGAGGGATTCACTATGTAGAT-AAAAGGAAAATAAGCAAGTCA-CAGATGCCATCTGCCTTTTTCTCTGGTTATTTCTCC-------AAATAGAAAGATACTTTTGAGATACTGTCTTCTGGAAAACACTGAAAGAGCCCCCAGAACAGAATGAATCAAGGGCTCTTCAATTGCAAA---AGGATATCAGTGT-GTGG---ACCT---GTAT---TTCTAATAC--ACAGCCTTGAATGTGGTTGGA------------ATGTTGAATTTATGTATATATTCAAGTGTATC--TTTGGGTGTTTGTAGTTTTATGTTAAGTGTATTTTGACTT----TGTTATCGGTAATAATGCCAA-----T--------ATAATACATG-----------ATATGTGACTTCAGATAAATTTGGCATCTGAGAATAT-TGGGCTCTTCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2448071 737 -   3067355 ATGAATTGATTACTGGGTTGTATCAA---------TAGCAATAGGAAGGGTAAAATTGCATTACT----------------ACTTTTTATAGATGTACTAGAACATCTACAGTGATGGG-AAAAAA-----CATGAGAAAA---AAGAAGAAAATTAAAATGGTTAAACCAGAGATATTATGGGAGAACTAAG--AGAAACCAATAGCTCTGGATATATTCTTTGAAATGTTCTTAACAGGTCATTCTGTATTTCTTGAAATCTAAGAAACAGACTCCAAAATAACAGTTTAATTGGTTATATGAAGCATTCTCCCCATTGGAAAGCCAAGAATGCTTGGAGACTCAGATCCTCAGAGACCT----GAGAGACAACAAACCTAAGAGAGCCTTCCTCAAGAGGGATTCACTATGTAGAT-AAAAGGAAAATAAGCAAGTCA-CAAATGCCGTCTGCCTTTTTCTCTGGTTGTTTCTCC-------AAATAGAAAGATACTTTTGAGATAATGTCTTCTGGAAAACACTGAAAGAGCCCCCAGAGTAGAATGAATCAAGGGCTCTTCAATTGCAAA---AGGATATCAGTGT-GTGG---ACCTGTAGTAT---TTCTAATAC--ACAACCTTGAATGTGGTTGGA------------ATATTGAATTTATATATATATTCAAGTGTATC--TTTGGGTGTTTGTAGTTTTATGTTTAGTGTATTTTGACTT----TGTTATCTGTAATAATGCCAA-----T--------ATAATACATG-----------ATATGTGACTTCAGATAAATTTGGCATCTGAGAATAT-TGGGCTCTTCTT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     465184 746 +    730504 ATAAATTAATTACTATGTTATATCAA---------TATCAATAAGATGGGTAAAAATGCATTATT----------------ACCTTTTGTAGATGTACTAGGACATCTACAGTGATAGA-AAAAAA----AAATGAGAGAG------AAGAAAATTAAAATGGTTAAACCAGAAATATTATGGGAGAACTAAG--AGACACCAATAGCTCTGGACATTTTCTCTGAAATGTTCTTGACAGGTCGTCCTCTACTTCTTGAAATCTAAGAAATAGA-CTTAAAATAACAGATTAATTGGTTATACGAAGAGCTTTCCCCATTGGAAAGCCAAATACGCTTGGAGACTCAAGTCTTCAGAGACTTTAA--AGAGACACCAAACCTAAGAGAATTTTCCTCATGAGGGATCCATGAAGTAGAGAAAAGAGAAAATAAGCAAGTCATCAAATGCCAGCTGCCTTCATCACT-GTTATTTC-CC-------AAATAGAAAGACACTATTCAGACGATAGCTTCTGGAAAACACTGGAAGAGCCCCCAAAGTGGAATAAACCACAAACTCTCCAGCTGCAAA---AGGATATCAGCATTGTGG---GCTT---GTAT---TTCTAATAT--ACATTCTTGAATATGGTTATATTTTTTGCACAGAGTTTGGATTTATGTATATACTTAAGTGTATC--TTTGGGTGTTTACACTTTTATGTTCAATGTGTTTTGACTTTTACTGTTACTTGTAATGATGTCTG-----T--------ATAATACATGAT-------TTATTTGCGACTTTAGATGAATCCAGCACCTGA---------GGATGTTCTT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2148338 723 -   2232465 ATAAACTAATTACTAGATT------A---------TATGAATAAGATAGGTAAAATCATATGA---------------------TTTTGTAGATGTACTAGGATATCTACAGTGATGGG-GGAAAA----TCATAAGAAAA------AAGAAAATTAAAAAGATTAAACCAGAAATATTATGGAAGAACTTAG---GAAACCAAGAGCTCTGGACATTTTCTCTGAAATATCTTTGATACGTCATCATCTACTTCTTGCAATCTAAGAAACAGA-TTCCAAAATAATGATTAATTAGTTATGTGAAGAGTTCTCCCCACTGGAAAGCCAAATACACTGGGAGATTCAAGTCCTCAGAGACCTTAA--AGAGACACCAAACCTAAGAGAATGTTTCTCATGAGGGATCC-------AGGGAAAAGAGAAAATAAGCACATCATCAAATTCCAGCTGCCTTCAACACT-GTTATTTCTCC-------AAATAGAGAGACACTATTCAGACGATGTCTTCTGGAAGATACTGATAGAGCCCCCAAAGTGGAATAAACCAAAAACTCTCCTACTGCAAA---AGGATATCA-----ATGG---GCTT---GTA----TTCTAATAT--ACATTCTTGAATATGGTTATATTTTTTGTATGCAGATTATATTTATGTATATGTTTAAGTGTATC--ATTGAGTGTTCATACTTTTATATTAAATGTATCTTGACTTCCAC-------TGTAATCATGTCTA-----T--------ATAACACATGAT-------TTATTTGTGACTTTAGATAAACCTGGCATCTGATGACAT-TGGGCTATTCTT
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57773751 721 -  94987271 ATAAAATCATTATTGAACAATATCAATGAATAATGTATTAATAATAA--GTAGAATTACTGG----------------------CTTTGTAGATGTAGT--GACATCTACAATGATGGA-AAGAAG------AAAATAATG---AGGGGAAAAATAAAAACGGCTGACCAAGGAGCA-TATATGAGAGCTAAGAGAGAAACCCATAACCCTTGAAATTGTCTGCAGAAGGTTCTC-CCAGGCCGTCCTGAGATCCCTGCCACCTAAGGAACAGACTCCAAAATAAC--ATTAATTAGTTGTGTGAGGC--TCTCCCAATTGTAAAGCAGATTGTACTGGGAGACTCAGGTCCTCAGAGACATAAG-------------------GAAAATCCTCCTGCTGAGGGACCCATGTTGCAGAG-GGTGAAAAATTAAGGCAGTTACCAGGCACCacctgcttttatcaatggctatttttcc-------aagTAGGAAAACATTATACAGAAGATG--TACAGGAAAACACAGGGAGATCCC---GGATAAAATAAAGCAGGGACTGACCTGCAGCAGACCTAGTGT----GTGG-GTGG---GCTC---ATGA---TTCTAATGTGAGCATTTATAATTTTGCACACC------------AT-TTGAATTTATGTATCTGCTAAAGTTTATCTTTTTAGTTGTGTATA-TTTTATT----GTATATAGTGACTTTCA-TGTTATTTGTAATGATGTTTG-----TGTATGTACATAATATATGGT-------ACATTTGTGACCTTGAATGAACCTGGCTTCTGAGATTAT-TAATTTACTCTT
i mm10.chr17               I 6323 C 0
s canFam3.chr35            26176924 684 +  26524999 ATATATTGATTACTGAATTACATTGA---------CAGCAAGGAGCTGTATAAACC-------AC----------------ACTGTTTGCAGGGATGTTAGAACATCTATAGTAATGGA-AATAAA---------------------------ATCAAGATGACTGAGCCAGAGATGCTCTGGGTGAGCTGAG--GCA----------CCTGGACAT----TCTGAAAC-CTCTGCACAGGTCACAGCACACTGTTTGCAATCTCACATAC----TCCAACA---------GATTGTCTGTGTGGAGAGCTCTCCCC-CTGGAAAGCCACGAGTGCTTGGAGAC-CAGGTCCTCAGAGACTCTTA--AGAGACACCAAATCTAAGCACACCTCCCTCATGAGGGATCCACAGAGTAAAGACAGAGGATCCTGAGCAGGTCACTAGACGTCATCTGCCTTCAGCACCAGCGATTTCTCC--------AACGCAAAGATATTATTCAGAGAATGTCTCCTGTAAGCCA--GGAAG----------GTGGGA-GAACCAAGGACTTTCCACTTGCAAA------GTATCAGTGT-GTGA---GCTT---GCAT---TT-TATGAC--ACAGTCTTGAACATGGTTATG-GTTTTGCAAAGAATTTGAATGTATTCATCTATCGAACCATATC--TCTGCTGTTTTATATTTTCATGTTAAATGTGTTTTCACTCTCACTGTTATTTGAAATGATATTTACATTGT--------ATAATA-ATG-----------ATTTGCTGCCTTAGATGAACCTAGAATGTGAGATTGTGTTATGTCCATTC
i canFam3.chr35            C 0 C 0
s dasNov3.JH569098           224440 735 -    254539 ATAAATTGTTTACTGAATTATATGAA---------TAGCAATGACATGCATATAACTGCATTATTTCCAACATGGAGAAGGCCCGTATATAGGTATACTAG-ACATCAACAGTGATGGA-AAGAAGAAAATCATAAGAAAGGAGAAGAGGAAAACAAAAATGGTTGGACTGGGGATATTATGGAAGAGCCAAG--ACAGACTAATAGCCCTGGACATTTTCCCTGAAATGTTTTTGATAGATCATCCTACAGTTCGTGGCATCTAAGAAACAGATTCCAAAACAACAGATGAGTTGGCTATGTAGAGC--TCTCGCCATTAGAAGGTCAAATGTGCTT-CACATTCCCATACTCAGAG-CCTTAA--AGAGCCACCAAGCATAAGAT-----------------ACCCGGTGTGCAGAGAAAGGAGGAGATAAGCAAGTCATCAAATGT----------------GGGTTATTT-TCC-------AAATAGAAAGGCATTGTCCAAATAACATCTCCTGGAAAGCACTGAAGAGGCTCCCAAGGTCAAACAAACCAAGGACTCTCCAGCTGAAAA---AGGATACCAGTGT-GGGGTTAAGTT---GTACACATTTTGGTAT--GCAGTTATATTTTTGTGCAGA------------AT-TTGGATTTATGTATCTGTTGAAGTATATC----------CTTATATTTTTTAGTTTAATGTGTTT-GGCTGTCATTGTTATTTGTAAAGATGTCTG-----TA-------AGAATACACAGTGTATCAGTTATTTGTGACCTTAGAGGAACCTGACATCAGAGGATTT-GGGGCTATTTTC
i dasNov3.JH569098         C 0 I 433

a score=1231856.000000
s hg38.chr6_GL000254v2_alt   704555 196 +   4827813 CTGTGCCTGTATTTTGAAATATAATTTGACAGTGTGTGAATTTGTGGAGTT-----------TATGTGTGTA----GTTTGGGGATTTT-CATGT---TTACAATGTAAGAGGACTAAGTTTGAAAGTCTGTAAGATGCAG-AAATAAGCAATTAAGGAAGTTCTTGTCATCTTTTGCCTGAGCA-TGTTTTAAAACTA-GAGAAATGCTCACCCCTC
s panTro5.chr6             29678014 196 + 175400573 CCGTGCCTGTATTTTGAAATATAATTTGACAGTGTGTGAATTTGTGGAGTT-----------TATGTGTGTA----GTTTGGGGATTTT-CATGT---TTACAATGTAAGAGGACTAAGTTTGAAAGTCTGTAAGATGCAG-AAATAAGCAATTAAGGAAGTTCTTGTCATCTTTTGCCTGAGCA-TGTTTTAAAACTA-GAGAAATGCTCACCCCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29908757 196 + 173848474 CTGTGCCTGTATTTTGAAATATAATTTGACAGTGTGTGAATTTGTGGAGTT-----------TATGTGTGTA----GTTTGGGGATTTT-CATGT---TTACAATGTAAGAGGACTAAGTTTGAAAGTCTGTAAGATGCAG-AAACAAGCAATTAAGGAAGTTCTTGTCATCTTTTGCCTGAGCA-TGTTTTAAAACTA-GAGAAATGCTCACCCCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5719100 196 +   6154872 CTGTGCCTGTATTTTGAAATATAATTTGACAGTGTGTGAATTTGTGGAGTT-----------TATGTGTGTA----GTTTGGGGATTTT-CATGT---TTACAATGTAAGAGGACTAAGTTTGAAAGTCTGTAAGATGCAG-AAATAAGCAATTAAGGAAGTTCTTGTCATCTTTTGCCTGAGCA-TGTTTTAAAACTA-GAGAAATGCTCACCCCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      10200 196 +     27237 CTGTGCCTATATTTTGAAATATAATTTGTCAGTGTGTGGATTTGTGAAGTT-----------TATGTGTGTG----ATTTGGGGATTTT-CATGT---TTACAATATAAGAGGATTAAGTTTGAAAGACTGTAAGATGCAG-AAATAAGCAATTAAGGAAGTTCTTGTCATCTTTTACCTGAGCA-TTTTTTTAAACTA-GAGAAATACTCACCCCTC
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2638115 195 -   2996164 CTGTGCCTATATTTTGAAATATAATTTGTCAGTGTGTGGATTTGTGAAGTT-----------TATGTGTGTG----ATTTGGGGATTTT-CATGT---TTACAATATAAGAGGATTAAGTTTGAAAGACTGTAAGATGCAG-AAATAAGCAATTAAGGAAGTTCTTGTCATCTTTTACCTGAGCA--TTTTTTAAACTA-GAGAAATACTCACCCCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     389763 194 +    766320 CTGTGCCTGTATTTTGAAATATAATTTGTCAGTGTGTGGATTTGTGGAGTT-----------TATGTGTGTG----ATTTGGGGATTTT-CATGT---TTACAATGTAAGAGGATTAAGTTTGAAAGAC--TAAGATGCAG-AAATAAGCAATTAAGGAAGTTCTTGTCATCTTTTACCTGAGCA-TTTTTTAAAACTA-GAGAAATGCTCACCCCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28847591 196 -  71996105 CTGTGCCTATATTTTGAAATATAATTTGTCAGTGTGTGGATTTGTGGAGTT-----------TATGTGTGTG----ATTTGGGGATTTT-CATGT---TTACAATATAAGAGGATTAAGTTTGAAAGACTGTAAGATGCAG-AAGTAAGCAATTAAGGAAGTTCTTGTCATCTTTTACCTGAGCA-TTTTTTAAAACTA-GAGAAATACTCACCCCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      10896 194 +    290775 CTGTGCCTGTATTTTGAAATATAATTTGTCAGTGTGTGGATTTGTGGAGTT-----------TATGTGTGTG----ATTTGGGGATTTT-CATGT---TTACAATGTAAGAGGATTAAGTTTGAAAGAC--TAAGATGCAG-AAATAAGCAATTAAGGAAGTTCTTGTCATCTTTTACCTGAGCA-TTTTTTAAAACTA-GAGAAATGCTCACCCCTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2448808 196 -   3067355 CCGTGCCTGTATTTTGAAATATAATTTGTCAGTGTGTGGATTTGTGGAGTT-----------TATATGTGTG----ATTTGGGGATTTT-CATGT---TTACAATATAAGAGGATTAAGTTTGAAAGACTGTAAGATGCAG-AAATAAGCAATTAAGGAAGTTTTTGTCATCTTTTACCTGAGCA-TTTTTTAAAGCTA-GAGAAATGCTCACCCCTC
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     465930 199 +    730504 CTGTGCTTGTATTTAGAAAtgtggtgtgtta-tgtgtggatttgtggaatt-----------tatgtgtgtg----gtctggggatttC-CTTCTGTgttacaatataagaagatgaagttcgagagtctgtaagatgcag-aaataagcaattgaggaaggtcttatcatctctctcctgagcatttttttaaaactg-gagaaatcctcatccctc
i proCoq1.NW_012152574v1   C 0 I 23
s otoGar3.GL873742          2149061 202 -   2232465 CTGTGCTTATATTTAGAGATGTAGTGTGTTAGTGTGTGGATTTGTAGAGTT-----------TATGTGTGTG----GTTTGGGAATTTT-CTGAAGTGTTGCCatataagagaatgaattttgagagtctgtaagggacagtaaataggcagtcgaggacagtcttgtcatctctttcctgagcacttttttaaaactgagaaaaaccctcatctctc
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57774472 186 -  94987271 CTTTGCTTAGATTTAGAAGTGCAACATGTTAGTGTTTGCATCTCTTG-TCT-----------TGTGTACAGG----GTCTGGGCATTCTGTATGT--ATCATGATATAAAAGGA-TGAGTCTGAGAAGCACCAAGATGAGG-AGATGAGCAACTGAAGGAGGCCTTGTATTCCACT------GCA-TTTTT----ATTA-CAGAGCTCTTCACTCATA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26177608 198 +  26524999 CTGTGCTTGTATTTAGAAATGTGATGTGTTAGTGTGTGAATTGGTGGAGTT-----------TGTGTGTGTG----GTTTGGGGATTTG-CACACGCGCTTGGGTATAAAGGAGATGCATTTCAGGGTCTGGAAGATGCAG-CAATGAGCAACCAAGAAAGACCCT-TCATGTCCTTCCCAAGAA-TCTTTGAAAACTA-GGGAGACCCTCAGTCCTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH569098           225608 196 -    254539 cTGTGCTTGTATTTAGAAAT-TAATATGTTAGTGTGTGAATTTGTGGAGTTTCTATGTTAAGTATATGTGTGGTCTGTTTGGGAATTTG-CATGTGTGTTACAGTATGAG-GAATGAAGATTAAGAGGCTGTGAAATACAG-AAATAAGCAGCCAAGGAAGGCTCTGTCAAC--------------CCTCTAAAAACTA-GAGA---CCCCACTCCTC
i dasNov3.JH569098         I 433 C 0

a score=96032.000000
s hg38.chr6_GL000254v2_alt   704751 22 +   4827813 TAAATAGTTGAACTGTTTAA-TG
s panTro5.chr6             29678210 22 + 175400573 TAAATAGTTGAACTGTTTAA-TG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29908953 22 + 173848474 TAAATAGTTGAACTGTTTAA-TG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5719296 22 +   6154872 TAAATAGTTGAACTGTTTAA-TG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      10396 23 +     27237 TAAATAGTTGAACTGTTTAACTG
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2638310 23 -   2996164 TAAATAGTTGAACTGTTTAACTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     389957 23 +    766320 TAAATAGTTGAACTGTTTAACTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28847787 23 -  71996105 TAAATAGTTGAACTGTTTAACTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      11090 23 +    290775 TAAATAGTTGAACTGTTTAACTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2449004 23 -   3067355 TAAATAGTTGAACTGTTTAACTG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2149263 22 -   2232465 aagatagctgaactgcttaatt-
i otoGar3.GL873742         C 0 I 2
s mm10.chr17               57774658 22 -  94987271 TAACCAGCTAATAGCTTTATTT-
i mm10.chr17               C 0 I 1
s canFam3.chr35            26177806 17 +  26524999 CAAAT-----AACTGTTTACCT-
i canFam3.chr35            C 0 I 2
s dasNov3.JH569098           225804 22 -    254539 TGGATAAATGAACTGCTTAACT-
i dasNov3.JH569098         C 0 I 2
e proCoq1.NW_012152574v1     466129 23 +    730504 I

a score=699203.000000
s hg38.chr6_GL000254v2_alt   704773 124 +   4827813 CTATAGGAGCTTAAAAAGAGAGGATCTTTCTCATTTTTTTTCTCCTCCTTGAACACTGTGAAAT-----TTAT----GGTAAAATGACAGA---------AAAAGAAGAAAGACTAAGTGAATCTGGTAACTAAAG--------AAAGAG
s panTro5.chr6             29678232 124 + 175400573 CTATAGGAGCTTAAAAAGAGAGGATCTTTCTCATTTTTTTTCTCCTCCTTGAACACTGTGAAAT-----TTAT----GGTAAAATGACAGA---------AAAAGAAGAAAGACTAAGTGAATCTGGTAACTAAAG--------AAAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29908975 124 + 173848474 CTATAGGAGCTTAAAAAGAGAGGATCTTTCTCATTTTTTTTCTCCTCCTTGAACACTATGAAAT-----ATAT----GGTAAAATGACAGA---------AAAAGAAGAAAGACTAAGTGAATCTGGTAACTAAAG--------AAAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5719318 124 +   6154872 CTATAGGAGCTTAAAAAGAGAGGATCTTTCTCATTTTTTTTCTCCTCCTTGAACACTGTGAAAT-----TTAT----GGTAAAATGATAGA---------AAAAGAAGAAAGACTAAGTGAATCTGGTAATTAAAG--------AAAGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      10419 123 +     27237 CTAGAGGAGCTT-AAAAGAGAGTATCTTTCAAATTATTTTTGTCCTCCTTGAAAACTGTGAAAT-----TGAT----GGTAAAATGATAGA---------AAAAGAAGAAAGGCTAAGTGAATCTGGTAACTGAAG--------AAAGAG
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2638333 123 -   2996164 CTAGAGGAGCTT-AAAAGAGAGTATCTTTCAAATTATTTTTGTCCTCCTTGAAAACTGTGAAAT-----TGAT----GGTAAAATGATAGA---------AAAAGAAGAAAGGCTAAGTGAATCTGGTAACTGAAG--------AAAGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     389980 123 +    766320 CTAGAGGAGCTT-AAAAGAGAGTGTCTTTCAAATTATTTGTCTCCTCCTTGAAAACTGTGAAAT-----TGAT----GGTAAAATGATAGA---------AAAAGAAGAAAGGCTAAGTGAATCTGGTAACTGAAG--------AAAGAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28847810 123 -  71996105 CTACAGGAGCTT-AAAAGAGAGTATCTTTCAAATTATTTTTGTCCTCCTTGAAAACTGTGAAAT-----TGAT----GGTAAAATGATAGA---------AAAAGAAGAAAGGCTAAGTGAATCTGGTAACTGAAG--------AAAGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      11113 123 +    290775 CTAGAGGAGCTT-AAAAGAGAGTATCTTTCAAATTATTTGTCTCCTCCTTGAAAACTGTGAAAT-----TGAT----GGTAAAATGATAGA---------AAAAGAAGAAAGGCTAAGTGAATCTGGTAACTGAAG--------AAAGAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2449027 123 -   3067355 CTAGAGGCGCTT-AAAAGAGAGTATCTTTCAAATTATTTTTCTCCTCCTTGAAAACTGTGAAAT-----TGAT----GGTAAAATGATAGA---------AAAAGAAGAAAGGCTAAGTGAATCTGGTAACTGAAG--------AAAGAG
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     466152 128 +    730504 ctggagGAGCTT-GAAAGAGAGGATTTCTCAAACTCCTTTTCTCCCCCTTGAAAACTACAAAATTTGTCTGAT----GGTAAAATAATAGA---------AAAAGTAGAAAGGCTGAGTGAATCTGGTAACTGAAG--------AAAGAG
i proCoq1.NW_012152574v1   I 23 C 0
s otoGar3.GL873742          2149287 117 -   2232465 ctataggagctt-g-aagaaaggatTTCTCAAATTCCTTTTCTCCCCATTGAAAACTATGAAATTTAACTGAT----TTT----------A---------AAAAGCAGAAAGGTTGAATGAATTTGGTAACTGAag--------aaagag
i otoGar3.GL873742         I 2 I 291
s mm10.chr17               57774681 112 -  94987271 CTGCAGCTGCCT-GAAAGAGCTGATTATTTTGAGTCTTCCCTGCC-------AAACTGTGAGCT-----CTATTTGAGGTAAGATAATAGC---------AAATAAAAAGACGCT-------TCTGGAAGATG-GG--------AAAGAA
i mm10.chr17               I 1 I 4
s canFam3.chr35            26177825 145 +  26524999 CTCTGGGAGCTC-AAAAGAGGTGACTTTTTAAATTTCTTTCCTCCTTTGTGCAAACCATGAAATTTTTCCAAA----GGCAAAACAATCAAGGAAAACTGAGAAAGAGAGGGGTCAAGTGGGTCTGGTAGATGAAGAATGTTTAAAAggg
i canFam3.chr35            I 2 I 18
s dasNov3.JH569098           225828 123 -    254539 CTACAGCAGCTT-GAAAGAGATTATGATTCAAATTCCTTTCCTCTTCC-TGAAAAGCATGAAATTTAGAGAAT----GGTAAATTAATCAA---------AAAAGAAGAGGAGCTGAGTGGATCTCCTAAATGAAA--------AG----
i dasNov3.JH569098         I 2 C 0

a score=30021.000000
s hg38.chr6_GL000254v2_alt   704897 5 +   4827813 CTGGA
s panTro5.chr6             29678356 5 + 175400573 CTGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29909099 5 + 173848474 CTGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5719442 5 +   6154872 CTGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      10542 5 +     27237 CTGGA
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2638456 5 -   2996164 CTGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     390103 5 +    766320 CTGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28847933 5 -  71996105 CTGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      11236 5 +    290775 CTGGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2449150 5 -   3067355 CTGGA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     466280 5 +    730504 ATAGA
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57774797 5 -  94987271 TCAAA
i mm10.chr17               I 4 I 1
s canFam3.chr35            26177988 5 +  26524999 ctggg
i canFam3.chr35            I 18 I 75
s dasNov3.JH569098           225951 5 -    254539 CTGAA
i dasNov3.JH569098         C 0 C 0
e otoGar3.GL873742          2149404 291 -   2232465 I

a score=201002.000000
s hg38.chr6_GL000254v2_alt   704902 31 +   4827813 AAAAAGAAAA------------CTAGAGGGCA-------AGAGGTGATAA
s panTro5.chr6             29678361 31 + 175400573 AAAAAGAAAA------------CTAGAGGGCA-------AGAGGTGGTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29909104 31 + 173848474 AAAAAGAAAA------------CTAGAGGGCA-------AGAGGTGATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5719447 31 +   6154872 AAAAAGAAAA------------CTAGAGGGCA-------AGAGGTGATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      10547 31 +     27237 AAAAAGAAAA------------CTAGAGGACA-------AGAGGTGATAA
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2638461 31 -   2996164 AAAAAGAAAA------------CTAGAGGACA-------AGAGGTGATAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     390108 31 +    766320 AAAAAGAAAA------------CTAGAGGGCA-------AGAGGTGATAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28847938 31 -  71996105 AAAAAGAAAA------------CTAGAGGGCA-------AGAGGTGATAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      11241 31 +    290775 AAAAAGAAAA------------CTAGAGGGCA-------AGAGGTGATAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2449155 31 -   3067355 AAAAAGAAAA------------CTAGAGGGCA-------AGAGGTGATAA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     466285 31 +    730504 AAAAGGAAAA------------GTAGAGGGCA-------AGAGGTGATAA
i proCoq1.NW_012152574v1   C 0 I 171
s otoGar3.GL873742          2149695 31 -   2232465 aaaaaggaaa------------atagagggca-------agagatgatga
i otoGar3.GL873742         I 291 C 0
s mm10.chr17               57774803 31 -  94987271 AAGAGAATCA------------CTGAGAGGAA-------GAAAGAAATAT
i mm10.chr17               I 1 I 9
s canFam3.chr35            26178068 50 +  26524999 aaaaagagaagaaactcaGGTCACAGAGGACATACACTGAGAGGAAAGGA
i canFam3.chr35            I 75 I 2
s dasNov3.JH569098           225956 30 -    254539 GAAAGGAAAA------------ATAAAGGG-A-------AGAGGTTAAAA
i dasNov3.JH569098         C 0 C 0

a score=123873.000000
s hg38.chr6_GL000254v2_alt   704933 37 +   4827813 GAGAGGTCACCTCTT----------ATCAGACAGGAGACAAGTTGAT------------------------------------------------------
s panTro5.chr6             29678392 37 + 175400573 GAGAGGTCACCTCTT----------ATCAGACAGGAGACAAGTTGTT------------------------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29909135 37 + 173848474 GAGAGGTCACCTCTT----------ATCAGACAGGAGACAAGTTGAT------------------------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5719478 37 +   6154872 GAGAGGTCACCTCTT----------ATCAGACAGGAGACAAGTTGAT------------------------------------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      10578 37 +     27237 GAGAGGTCACCTCTT----------ATCAAACAGGAGACAAGTTGAT------------------------------------------------------
i macFas5.chrUn_KE146120   C 0 I 140
s macNem1.NW_012011356v1    2638492 37 -   2996164 GAGAGGTCACCTCTT----------ATCAAACAGGAGACAAGTTGAT------------------------------------------------------
i macNem1.NW_012011356v1   C 0 I 140
s cerAty1.NW_012002711v1     390139 37 +    766320 GAGAGGTCACCTCTT----------ATCAAACAGGAGACAAGTTGAT------------------------------------------------------
i cerAty1.NW_012002711v1   C 0 I 139
s chlSab2.chr17            28847969 37 -  71996105 GAGAGGTCACCTCTT----------ATCAAACAGGAGACAAGTTGAT------------------------------------------------------
i chlSab2.chr17            C 0 I 140
s manLeu1.NW_012099233v1      11272 37 +    290775 GAGAGGTCACCTCTT----------ATCAAACAGGAGACAAGTTGAT------------------------------------------------------
i manLeu1.NW_012099233v1   C 0 I 140
s colAng1.NW_012115566v1    2449186 37 -   3067355 GAGAGGTCACCTCTT----------ATCAAACAGGAGACAAGTTGAT------------------------------------------------------
i colAng1.NW_012115566v1   C 0 I 140
s otoGar3.GL873742          2149726 28 -   2232465 -ttgggtca------------------gagagaggagacaaattgag------------------------------------------------------
i otoGar3.GL873742         C 0 I 8
s mm10.chr17               57774843 47 -  94987271 AAAAGATAACGAGTTTAGAGAAAGAACAGGACAGAAAATGCCCTGAT------------------------------------------------------
i mm10.chr17               I 9 I 2
s canFam3.chr35            26178120 29 +  26524999 GAGAAGCCA------------------CAGAGAAGAAAGAAAGGGAA------------------------------------------------------
i canFam3.chr35            I 2 I 11
s dasNov3.JH569098           225986 83 -    254539 ------------------AAAAATGGCCATAAAGGAGACAAGTTGGGGGGGGGAAGAAAATAGAAAACTGTCAAAAAATGAAAGAAAGTGGCAGAAGGATT
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     466316 171 +    730504 I

a score=23712.000000
s hg38.chr6_GL000254v2_alt   704970 4 +   4827813 GGAG
s panTro5.chr6             29678429 4 + 175400573 GGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29909172 4 + 173848474 GGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5719515 4 +   6154872 GGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      10755 4 +     27237 GGAG
i macFas5.chrUn_KE146120   I 140 C 0
s macNem1.NW_012011356v1    2638669 4 -   2996164 GGAG
i macNem1.NW_012011356v1   I 140 C 0
s cerAty1.NW_012002711v1     390315 4 +    766320 GGAG
i cerAty1.NW_012002711v1   I 139 C 0
s chlSab2.chr17            28848146 4 -  71996105 GGAG
i chlSab2.chr17            I 140 C 0
s manLeu1.NW_012099233v1      11449 4 +    290775 GGAG
i manLeu1.NW_012099233v1   I 140 C 0
s colAng1.NW_012115566v1    2449363 4 -   3067355 GGAG
i colAng1.NW_012115566v1   I 140 C 0
s otoGar3.GL873742          2149762 4 -   2232465 agag
i otoGar3.GL873742         I 8 I 29
s mm10.chr17               57774892 2 -  94987271 GG--
i mm10.chr17               I 2 C 0
s canFam3.chr35            26178160 4 +  26524999 GAAG
i canFam3.chr35            I 11 I 8
s dasNov3.JH569098           226069 4 -    254539 GGAG
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     466316 171 +    730504 I

a score=61866.000000
s hg38.chr6_GL000254v2_alt   704974  27 +   4827813 ------------------------------------------------------------------------------------------AAAAAGAT---------CT------------GCTATGAGGGAAAATT--C-
s panTro5.chr6             29678433  27 + 175400573 ------------------------------------------------------------------------------------------AAAAAGAT---------CT------------GCTATGAGGGAAAATT--C-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29909176  27 + 173848474 ------------------------------------------------------------------------------------------AAAAAGAT---------CT------------GCTATGAGGGAAAATT--C-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5719519  27 +   6154872 ------------------------------------------------------------------------------------------AAGAAGAT---------CT------------GCTATGAGGGAAAATT--C-
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      10759  26 +     27237 ------------------------------------------------------------------------------------------AAAAGGAT---------CT------------GCTATGAGGGAAAATT----
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2638673  26 -   2996164 ------------------------------------------------------------------------------------------AAAAGGAT---------CT------------GCTATGAGGGAAAATT----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     390319  26 +    766320 ------------------------------------------------------------------------------------------AAAAGGAT---------CT------------GCTACGAGGGAAAATT----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28848150  27 -  71996105 ------------------------------------------------------------------------------------------AAAAGGAT---------CT------------GCTATGAGGGAAAATTC---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      11453  27 +    290775 ------------------------------------------------------------------------------------------AAAAGGAT---------CT------------GCTACGAGGGAAAATTC---
i manLeu1.NW_012099233v1   C 0 I 73
s colAng1.NW_012115566v1    2449367  27 -   3067355 ------------------------------------------------------------------------------------------AAAAGGAT---------CT------------GCTATGAGGGAAAATT-C--
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     466487  26 +    730504 ------------------------------------------------------------------------------------------AAAAAAAT---------CT------------GCTAGAAGGGAAAATT----
i proCoq1.NW_012152574v1   I 171 I 1
s otoGar3.GL873742          2149795  38 -   2232465 ------------------------------------------------------------------------------------------agaaagat---------tcaagagggagaagaacaggagaggaagTT----
i otoGar3.GL873742         I 29 I 19
s mm10.chr17               57774894  35 -  94987271 ------------------------------------------------------------------------------------------AATAGGATTTTTTTTTCCT------------GCTCTGAGTGTGAATC----
i mm10.chr17               C 0 I 1
s canFam3.chr35            26178172  25 +  26524999 ------------------------------------------------------------------------------------------AGGGAGAT---------GA------------AC-ACAAGGGAAAGCC----
i canFam3.chr35            I 8 I 18
s dasNov3.JH569098           226073 117 -    254539 AGGGAGAAGAATTCAGAGGGAAAATACTCCATTGACTTGGAATGGGATTTTTCATGCCCTAAAGATGGAACAAATTCTGCCTCTAGGAAGTAAAACAT---------CT------------ACAGAGTGGGAAAATT---C
i dasNov3.JH569098         C 0 C 0

a score=135325.000000
s hg38.chr6_GL000254v2_alt   705001 31 +   4827813 TGTCTCCAGCCCTGCA---GGAAGAA------------TTGGAAAA
s panTro5.chr6             29678460 31 + 175400573 TGTCTCCAGCCCTGCA---GGAAGAA------------TTGGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29909203 31 + 173848474 TGTCTCCAGCCCTGCA---GGAAGAA------------TTGGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5719546 31 +   6154872 TGTCTCCAGCCCTGCA---GGAAGAA------------TTGGAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      10785 31 +     27237 TGTCTCCAGCCCTGCA---GGAAGAA------------TCGGAAAA
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2638699 31 -   2996164 TGTCTCCAGCCCTGCA---GGAAGAA------------TCGGAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     390345 31 +    766320 TGTCTCCAGCCCTGCA---GGAAGAA------------TTGGAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28848177 31 -  71996105 TGTCTCCAGTCCTGCA---GGAAGAA------------TTGGAAAA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2449394 31 -   3067355 TGTTTCCAGCCCTGCA---GGAAGAA------------CTGGAAAA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     466514 31 +    730504 TGCCCCCAGCCCTGAA---GGAAGGA------------TGGGAAAA
i proCoq1.NW_012152574v1   I 1 I 76
s otoGar3.GL873742          2149852 43 -   2232465 TTTTTCATGCCTTGAACATGGAACAA---TTCTGGCTGTGAGCAAA
i otoGar3.GL873742         I 19 I 10
s mm10.chr17               57774930 41 -  94987271 AATGTCCATTCATTGG---GGAAGGAAATGTCCACC--CCAGCCAA
i mm10.chr17               I 1 I 1
s canFam3.chr35            26178215 41 +  26524999 TGTTTCTCACTCTGAA---GGCAGAGGAATTCTGGC--TTTGAGAA
i canFam3.chr35            I 18 I 25
s dasNov3.JH569098           226190 31 -    254539 TATCTCCAGCTCTGTG---GGAAGGA------------TGCAAAAG
i dasNov3.JH569098         C 0 C 0
e manLeu1.NW_012099233v1      11480 73 +    290775 I

a score=137582.000000
s hg38.chr6_GL000254v2_alt   705032 43 +   4827813 TCAGAAAAGAGTGAA----AAGGGAGCTAGAC-------TGACT-TA----ATC----TTCAG
s panTro5.chr6             29678491 43 + 175400573 TCAGAAAAGAGTGAA----AAGGGAGCTAGAC-------TGACT-TA----ATC----TTCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29909234 43 + 173848474 TCAGAAAAGAGTGAA----AAGGGAGCTAGAC-------TGACT-TA----ATC----TTCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5719577 43 +   6154872 TCAGAAAAGAGTGAA----AAGGGAGCTAGAC-------TGACT-TA----ATC----TTCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      10816 43 +     27237 TCAGAATAGAGTGAA----AAGGCAGCTAGAC-------TGATT-TA----ATC----CTCAG
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2638730 43 -   2996164 TCAGAATAGAGTGAA----AAGGCAGCTAGAC-------TGATT-TA----ATC----CTCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     390376 43 +    766320 TCAGAAAAGAGTGAA----AAGGCAGCTAGAC-------TGATT-TA----ATC----CTCAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28848208 43 -  71996105 TCAGAAAAGAGTGAA----AAGGCAGCTAGAC-------TGATT-TA----GTC----CTCAG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2449425 43 -   3067355 TCAGAAAAGAGTGAA----AAGGCAGCTAGAC-------TGATT-TA----ATC----CTCAG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2149905 47 -   2232465 TTAGGAGAGATGAGA----AATGTAGAAAAGC-------TGGAA-TA----ATCCATACTCAG
i otoGar3.GL873742         I 10 C 0
s mm10.chr17               57774972 58 -  94987271 ACAGGAAATGGTGAAGCATGAAAAagctggatatagtggtgact-tatggtaat----tccag
i mm10.chr17               I 1 I 2
s canFam3.chr35            26178281 43 +  26524999 TGGACAAGGAGAGAA----GACCAGACAAGGA-------TGACT-CA---CATG----TCCA-
i canFam3.chr35            I 25 C 0
s dasNov3.JH569098           226221 44 -    254539 GGAGAAGGGAGCAAA----ACATGGGCTTCAA-------TGAATGCA----ATC----CTCAT
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     466545 76 +    730504 I
e manLeu1.NW_012099233v1      11480 73 +    290775 I

a score=183812.000000
s hg38.chr6_GL000254v2_alt   705075 46 +   4827813 -CCCAGGTAAAACTGG------------------AAAG-ACAGTTTAACATGT--TCTTTAGAATGAT
s panTro5.chr6             29678534 46 + 175400573 -CCCAGGTAAAACTGG------------------AAAG-ACAGTTTAACATGT--TCTTTAGAATGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29909277 46 + 173848474 -CCCAGGTAAAACTGG------------------AAAG-ACAGTTTAACATGT--TCTTTAGAATGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5719620 46 +   6154872 -CCCAGGTAAAACTGG------------------AAAG-ACAGTTTAACATGT--TCTTTAGAATGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      10859 46 +     27237 -CCCAGGTGAAACTTA------------------AAAC-ACAATTCAACGTGT--TTTTCTGAATGAT
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2638773 46 -   2996164 -CCCAGGTGAAACTTA------------------AAAC-ACAATTCAACGTGT--TTTTCTGAATGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     390419 46 +    766320 -CCCAGGTGAAACTGA------------------AAAC-ACAATTCAACGTGT--TTTTCTGAATGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28848251 46 -  71996105 -CCCAGGTGAAACTGA------------------AAAC-ACAATTCAACGTGT--TTTTCTGAATGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      11553 46 +    290775 -CCCAGGTGAAACTGA------------------AAAC-ACAATTCAACGTGT--TTTTCTGAATGAT
i manLeu1.NW_012099233v1   I 73 C 0
s colAng1.NW_012115566v1    2449468 46 -   3067355 -CCCAGGTGAAACTGA------------------AAAC-ACAGTTCAACGTGT--TTTTCTGAATGAT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2149952 43 -   2232465 -CCCAAGAGGAACTGA------------------AAGCAAAAGTTTGATGTGT--TCTTCTGAA----
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57775032 64 -  94987271 -ctctgg--aagctgaggcaagaggatcgaggtgaatt-gcagaccagtgtggaatatagtgaatgct
i mm10.chr17               I 2 C 0
s canFam3.chr35            26178324 45 +  26524999 -CCCAGAGTAAACTGA------------------GGAC-AGATCTAAGTGTG---TCCTATGAAGGGC
i canFam3.chr35            C 0 C 0
s dasNov3.JH569098           226265 47 -    254539 CCCAGGGAGAAGATAA------------------ATGC-ATAATTTAATGTGT--CCTTCTCAAGGGC
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     466545 76 +    730504 I

a score=4849435.000000
s hg38.chr6_GL000254v2_alt   705121 697 +   4827813 AGGCACTATCAGGA------------------------------------------------------------------------AGagatgaagtcaggga-------ttcaggctcag-------------------------------------agagacaaatactcatccaggatcccaagagtgagcaagggt----ggaatatggactccaggcaaggctgcctaatttcaaagtccatgATATTCTAATAGAAAGGGAG-ATCTAGTGCTG---CGATCAGATGCAGAGAGAGGTCATCTTTGCCCATTTC-ACGATTCCATAGTTGTGATTTTTCCTTGCCATTTCTTTTGTCTTCCAGT-CAAAGGTATGCAGGCAGGATGAGTGCAAACACCTCCATGGTGACTGAGTTTCTTCTTCTCGGCTTCTCCCACCTGGCCGACCTCCAGGGCTTGCTCTTCTCTGTCTTTCTCACTATCTACCTGCTGACCGTGGCAGGCAATTTCCTCATTGTGGTGCTGGTCTCCACTGATGCTGCCCTCCAGTCCCCTATGTACTTCTTCCTGCGCACCCTCTCGGCCTTGGAGATTGGCTATACGTCTGTCACGGTCCCCCTGCTACTTCACCACCTCCTTACTGGCCGGCGCCACATCTCTCGCTCTGGATGTGCTCTCCAGATGTTCTTCTTCCTCTTCTTTGGCGCCACGGAGTGCTGCCTCCTGGCAGCCATGGCCTATGACCGCTATGCAGCCATCTGTGAACCCCTCCGCTACCCACTGCTGCTGAGCCACCGGGTGTGTCTACAGCTAGCTGG
s panTro5.chr6             29678580 695 + 175400573 AGGCACTATCAGGA------------------------------------------------------------------------AGagatgaagtcaggga-------ttcaggctcag-------------------------------------agagacaaatacttatccaggaccccaagagtgagcaagggt----ggaatatggactccaggcacggctgcctaatttcaaagtccatgATATTCTAATAGAAAGGGAG-ATCTAGTGCTG---CGATCAGATGT--AGAGAGGTCATCTTTGCCCATTTC-ACGATTCCATAGTTGTGATTTTTCCTTGCCATTTCTTTTGTCTTCCAGT-CAAAGGTATGCAGGCAGGATGAGTGCAAACACCTCCATGGTGACTGAGTTTCTTCTTCTCGGCTTCTCCCACCTGGCCGACCTCCAGGGCTTGCTCTTCTCTGTCTTTCTCACTATCTACCTGCTGACCGTGGCAGGCAATTTCCTCATTGTGGTGCTGGTCTCCACTGATGCTGCCCTCCAGTCCCCTATGTACTTCTTCCTGCGCACCCTCTCGGCCTTGGAGATTGGCTATACGTCTGTCACAGTCCCCCTGCTACTTCACCACCTCCTTACTGGCCGGCGCCACATCTCTCGCTCTGGATGTGCTCTCCAGATGTTCTTCTTCCTCTTCTTTGGCGCCACGGAGTGCTGCCTCCTGGCAGCCATGGCCTATGACCGCTATGCAGCCATCTGTGAACCCCTCCGCTACCCACTGCTGCTGAGCCACCGGGTGTGTCTACAGCTAGCTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29909323 695 + 173848474 AGGCACTATCAGGA------------------------------------------------------------------------AGagatgaagtcaggga-------ttcaggctcag-------------------------------------agagacaaatacttatccaggaccccaagagtgagcaagggt----ggaatatggactccaggcacggctgcctaatttcaaagtccatgATATTCTAATAGAAAGGGAG-ATCTAGTGCTG---CGATCAGATGT--AGAGAGGTCATCTTTGCCCATTTC-ACGATTCCATAGTTGTGATTTTTCCTTGCCATTTCTTTTGTCTTCCAGT-CAAAGGTATGCAGGCAGGATGAGTGCAAACACCTCCATGGTGACTGAGTTTCTTCTTCTCGGCTTCTCCCACCTGGCCGACCTCCAGGGCTTGCTCTTCTCTGTCTTTCTCACTATCTACCTGCTGACCGTGGCAGGCAATTTCCTCATTGTGGTGCTGGTCTCCACCGATGCTGCCCTCCAGTCCCCTATGTACTTCTTCCTGCGCACCCTCTCGGCCTTGGAGATTGGCTATACGTCTGTCACAGTCCCCCTGCTACTTCACCACCTCCTTACTGGCCGGCGCCACATCTCTCGCTCTGGATGTGCTCTCCAGATGTTCTTCTTCCTCTTCTTTGGCGCCACGGAGTGCTGCCTCCTGGCAGCCATGGCCTATGACCGCTATGCAGCCATCTGTGAACCCCTCCGCTACCCACTGCTGCTGAGCCACCGGGTGTGTCTACAGCTAGCTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5719666 697 +   6154872 AGGCACTATCAGGA------------------------------------------------------------------------AGagatgaagtcaggga-------ttcaggctcag-------------------------------------agagacaaatactcatccaggatcccaagagtgagcaagggt----ggaatatggactccaggcaaggctgcctaatttcaaagtccatgATATTCTAATAGAAAGGGAG-ATCTAGTGCTG---CGATCAGATGCAGAGAGAGGTCATCTTTGCCCATTTC-ACGATTCCATAGTTGTGATTTTTCCTTGCCATTTCTTTTGTCTTCCAGT-CAAAGGTATGCAGGCAGGATGAGTGCAAACACCTCCATGGTGACTGAGTTTCTTCTTCTCAGCTTCTCCCACCTGGCCAACCTCCAGGGCTTACTCTTCTCTGTCTTTCTCACTATCTACCTGCTGACCGTGGCAGGCAATTTCCTCATTGTGGTGCTGGTCTCCACTGATGCTGCCCTCCAGTCCCCTATGCACTTCTTCCTGCGCACCCTCTCGGCCTTGGAGATGGGCTATATGTCTGTCACGGTCCCCCTGCTACTTCACCACCTCCTTACTGGCCAGCGCCACATCTCTCGCTCTGGATGTGCTCTCCAGATGTTCTTCTTCCTCTTCTTTGGCTCCACGGAGTGCTGCCTCCTGGCAGCCATGGCCTACGACCGCTATGCAGCCATCTGTGAACCCCTCCGCTACTCACTGCTGCTGAGCCACCGGGTGTGTCTACAGCTAGCTGG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      10905 697 +     27237 AGGCACTATCAGGA------------------------------------------------------------------------AGAGATGAAGTCAGGGA-------TCCaggctgag-------------------------------------agagacaaatattcgtccaggatttcaagagtgagcaaggct----ggaatatggactccaggccgggctgcctgatttcaaagtccatgATATTCTAACAGAAAGGGAG-ATCCAGCGCTG---GGATCAGATGCAGAGAGAGGTCATCTTTGCCCATTTC-ACGATTCCATAGTTGTGATTTTTCCTTGCCATTTCTTTTGTCTTCCAAT-CAAAGGGATGTAGGCAGGATGAACGCAAACACCTCCATGGTGACTGAATTTCTTCTAGTAGGCTTCTCCCACCTGGCCGACCTCCAGGGCTTGCTCTTCTCTGTTTTTCTCACTATCTACCTGCTGACCGTGGCAGGCAATTTCCTCATTGTGGTGCTGGTCTCCACCGATGCTGCCCTCCAGTCCCCTATGTACTTCTTTCTGCGCGTCCTCTCGACCTTGGAGATTGGCTATACGTCTGTCACGGTCCCCCTGCTGCTTCACCACCTACTCACTGGCCAGTGCCACATCTCTCGCTCTGGATGTGCTCTCCAGATGTTCTTCTTCCTCTTCTTTGGTGCCACAGAGTGCTGCCTCCTGGCAGCCATGGCCTATGACCGCTATGCAGCCATCTGTGAACCCCTCCGCTACCCACTGCTGCTGAGCCACCGGATGTGTCTACAGCTAACTGG
i macFas5.chrUn_KE146120   C 0 M 1000
s macNem1.NW_012011356v1    2638819 697 -   2996164 AGGCACTATCAGGA------------------------------------------------------------------------AGAGATGAAGTCAGGGA-------TCCaggctgag-------------------------------------agagacaaatattcgtccaggatttcaagagtgagcaaggct----ggaatatggactccaggccgggctgcctgatttcaaagtccatgATATTCTAACAGAAAGGGAG-ATCCAGCGCTG---GGATCAGATGCAGAGAGAGGTCATCTTTGCCCATTTC-ACGATTCCATAGTTGTGATTTTTCCTTGCCATTTCTTTTGTCTTCCAAT-CAAAGGGATGTAGGCAGGATGAACGCAAACACCTCCATGGTGACTGAATTTCTTCTAGTAGGCTTCTCCCACCTGGCCGACCTCCAGGGCTTGCTCTTCTCTGTTTTTCTCACTATCTACCTGCTGACCGTGGCAGGCAATTTCCTCATTGTGGTGCTGGTCTCCACCGATGCTGCCCTCCAGTCCCCTATGTACTTCTTTCTGCGCGTCCTCTCGACCTTGGAGACTGGCTATACGTCTGTCACGGTCCCCCTGCTGCTTCACCACCTACTCACTAGCCAGTGCCACATCTCTCGCTCTGGATGTGCTCTCCAGATGTTCTTCTTCCTCTTCTTTGGTGCCACAGAGTGCTGCCTCCTGGCAGCCATGGCCTATGACCGCTATGCAGCCATCTGTGAACCCCTCCGCTACCCACTGCTGCTGAGCCACCGGATGTGTCTACAGCTAACTGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     390465 697 +    766320 AGGCACTATCAGGA------------------------------------------------------------------------AGAGATGAAGTCAGGGA-------TCCaggctgag-------------------------------------agagacaaatattcgtccaggatttcaagagtgagcaaggct----ggaatatggactccaggccgggctgcctaatttcaaagtccatgatattCTAATAGAAAGGGAG-ATCCAGTGCTG---GGATCAGATGCAGAGAGAGGTCATCTTTGCCCATTTC-ACGATTCCATAGTTGTGACTTTTCCTTGCCATTTCTTTTGTCTTCCAGT-CAAAGGGATGTAGGCAGGATGAACGCAAACACCTCCATGGTGACTGAATTTCTTCTAGTAGGCTTCTCCCACCTGGCGGACCTCCAGGGCTTGCTCTTCTCTGTCTTTCTCACTATCTATCTGCTGACTGTGGCAGGCAATTTCCTCACTGTGGTGCTGGTCTCCACCGATGCTGCCCTCCAGTCCCCTATGTACTTCTTTCTGCGCGTCCTCTCGACCTTGGAGATTGGCTATACGTCTGTCACGGTCCCCCTGCTGCTTCACCACCTCCTCACTGGCCAGTGCCACATCTCTCGCTCTGGATGTGCTCTCCAGATGTTCTTCTTCCTCTTCTTTGGCGCCACAGAGTGCTGCCTCCTGGCAGCCATGGCCTACGACCGCTATGCAGCCATCTGTGAACCCCTCCGCTACCCACTGCTGCTGAGCCACCGGGTGTGTCTACAGCTAACTGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28848297 697 -  71996105 AGGCACTATCAGGA------------------------------------------------------------------------AGAGATGAAGTCAGGGA-------TCCAGGCTGAG-------------------------------------AGAGACAAATATTCATCCAGGATTTCAAGAGTGAGCAAGGCT----GGAATATGGACTCCAGGCCGGGCTGCCTAATTTCAAAGTCCATGATATTCTAACAGAAAGGGAG-ATCCAGTGCTG---GGATCAGATGCAGAGAGAGGTCATCTTTGCCCATTTC-ACGATTCCATAGTTGTGATTTTTCCTTGCCATTTCTTTTGTCTTCCCAT-CAAAGGGATGTAGGCAGGATGAACGCAAACACCTCCATGGTGACTGAATTTCTTCTAGTAGGCTTCTCCCACCTGGCCGACCTCCAGGGCTTGCTCTTCTCTGTCTTTCTCACTATCTACCTGCTGACCCTGGCAGGCAATTTCCTCATTGTGGTGCTGGTCTCCACCGATGCTGCCCTCCAGTCCCCTATGTACTTCTTTCTGCGCGTCCTCTCGACCTTGGAGATTGGCTATACATCTGTCACGGTCCCCCTGCTGCTTCACCACCTCCTCACTGGCCAGTGCCATATCTCTCGCTCTGGATGTGCTCTCCAGATGTTCTTCTTCCTCTTCTTTGGTGCCACAGAGTGCTGCCTCCTGGCAGCCATGGCCTATGACCGCTATGTAGCCATCTGTGAACCCCTCCGCTACCCACTGCTGCTGAGCCACGGGATGTGTCTACAGCTAACTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      11599 697 +    290775 AGGCACTATCAGGA------------------------------------------------------------------------AGAGATGAAGTCAGGGA-------TCCaggctcag-------------------------------------agagacaaatattcatccagaatttcaagagtgagcaaggct----ggaatatggactccaggccgggctgcctaatttcaaagtccatgATATTCTAATAGAAAGGGAG-ATCCAGTGCTG---GGATCAGATGCAGAGAGAGGTCATCTTTGCCCATTTC-ACGATTCCATAATTGTGATTTTTCCTTGCCATTTCTTTTGTCTTCCAAT-CAAAGGGGTGTAGGCAGGATGAACGCAAACACCTCCATGGTGACTGAATTTCTTCTAGTAGGCTTCTCCCACCTGGCGGACCTCCAGGGCTTGCTCTTCTCTGTCTTTCTCACTATCTACCTGCTGACCGTGGCAGGCAATTTCCTCACTGTGGTGCTGGTCTCCACCGATGCTGCCCTCCAGTCCCCTATGTACTTCTTTCTGCGCATCCTCTCGACCTTGGAGATTGGCTATACATCTGTCACGGTCCCCCTGCTGCTTCACCACCTCCTCACTGGCCAGTGCCACATCTCTCGCTCTGGATGTGCTCTCCAGATGTTCTTCTTCCTCTTCTTTGGCGCCACAGAGTGCTGCCTCCTGGCAGCCATGGCCTATGACCGCTATGCAGCCATCTGTGAACCCCTCCGCTACCCACTGCTGCTGAGCCACCGGGTGTGTCTACAGCTAACTGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2449514 697 -   3067355 AGGCACTATCAGGA------------------------------------------------------------------------AGAGATGAAGTCAGGGA-------TCCaggctcag-------------------------------------agagacaaatattcgtccagaatttcaagagtgagcaaggct----ggaatatggactccaggccgggctgcctaatttcaaagtccatgATATTCTAATAGAAAGGGAG-ATCCAGTGCTG---GGATCAGATGCAGAGAGAGGTCATCTTTGCCCATTTC-ATGGTTCCACAGTTGTGACTTTTCCTTGCCATTTCTTTTGTCTTCCAGT-CAAAGGGATGTAGGCAGGATGAACACAAACACCTCCATGGTGACTGAATTTCTTCTAGTAGGCTTCTCCCACCTGGCCGACCTCCAGGGCTTGCTCTTCTCTGTCTTTCTCACTATCTACCTGCTGACCGTGGCAGGCAATTTCCTCATTGTGGTGCTGGTCTCCACCGATGCTGCCCTCCAGTCCCCTATGTACTTCTTTCTGTGCGTCCTCTCGACCTTGGAGATGGGCTATACGTCCGTCACGGTCCCCCTGCTGCTTCATCACCTCCTCACTGGCCAGTGCCACATCTCTCGCTCTGGATGTGCTCTCCAGATGTTCTTCTTCCTCTTCTTTGGCACCACAGAGTGTTGCCTCCTGGCAGCCATGGCCTATGACCGCTATGCAGCCATCTGTGAACCCCTCCGCCACCCGCTGCTGCCGAGCCACCGGATGTGTCTACAGCTAACTGG
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     466621 693 +    730504 AGGCACTGCCAGGG------------------------------------------------------------------------AGAGATTAAGtgaggga-------tccaggctcag-------------------------------------agagacaaatatttgtccggagttctaagagtgatcaagggt----ggaacatggacccaaggctgggctg-ctaatttcaaaggccatgctattccAAAAGAAAGGGAG-TTCCAGCGCTG---TGATAAGGTGCAGAAAGAGGTCGTCTTTG-CCACTTC-CCTGTCCCACAGCTGAGACTTTTCCTTGCCATTTC-TCTGTCTCCCAGT-CAAAGGGATGTGA-CAAGATGCCTGCAAACACCTCCATGGTGACTGAATTCATTCTCGTTGGTTTCTCCCACCTGATCAACCTCCAGGGCTTGCTCTTCTCTCTCTTTCTCACTGTCTACCTGGTGACCGTGGCAGGGAACCTCCTCATCGTGGTGCTGGTCTCCACCGATGCTGCTCTCCAATCCCCCATGTACTTCTTCCTTCGCATCCTCTCAGCCCTGGAGATTGGCTACACGTCCATCACTGTCCCCCTGTTGCTTCACCACCTCCTCACTGGCCAGCGCCACATCCCTCGCTCTGGATGTGCTCTCCAGATGTTCTTCTTCCTCTTTTTTGGTGCCACGGAGTGTTGCCTCCTGGCAGCCATGGCCTACGACCGCTATGCCGCCATCCGCAAACCCCTCCACTACCCACAGCTGCTCAGTCGCCGAGCATGTCTGCAGCTAGCTGG
i proCoq1.NW_012152574v1   I 76 C 0
s otoGar3.GL873742          2149995 693 -   2232465 AGGCACTGTCAGGA------------------------------------------------------------------------AGGGATTAAGtgaggaa-------tctaggctcag-------------------------------------agagac-attatttatccaagattccaggagtgatcacagat----ggaatatggactcagtgctgggctgcctaatttcaaaggtcatgATATACTAAAAGAAAGCAAG-TTCCAATGCTG---TGACCAGTTGCAAAAAGAGGTCACCTTTGTCCACTTC-CCAATTGCACAGTTGAGACATTTTCTTGCCA--TC-TCTGTCTTCCAGT-CAAAGGGATATGAGCAAGATGAGTGAAAACACCTCCATGGTGACTGAGTTCATTCTTGTAGGTTTCTCCCACCTAGTCAACCTCCAGGGCTTGCTCTTCTCTCTCTTTCTCACTGTCTACCTGTTGACTGTGGCAGGGAACCTCCTCATCGTGGTGCTGGTCTCCACAGATGCTGCCCTCCAATCCCCTATGTACTTCTTCCTTCGAATCCTCTCAGCGCTGGAGATTGGCTACACGTCTGTCACTGTCCCCCTGCTGCTTCATCACCTCCTCACTGGTCGGCGCCATGTACCTCGCTCTGGATGTGCTCTCCAGATGTTCTTCTTTCTCTTTTTTGGTGCCACAGAGTGTTGTCTCCTGGCAGCCATGGCCTATGACCGCTATGCTGCCATCTGCAAACCCCTTCACTACTCACTGCTATTGAGCCGCCGGGTGTGTCTGCAGCTAGCTGG
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57775096 758 -  94987271 -gggccttcctggaatataattgaaaccTAagggagagagagagagagagagagagagagagagagagagagagagagagagagagagagaCTAAGCCAGAGAAGAAGAGTCTGAATTCAGTGTGTACTTCTGAGAATGAGGATAGTACAAAAAGACCAGAAACAAATATCCATCCAGGGTTCCTAGGATGACC-TGGGT----ATAACATGGGCTTGTGCCTGGACATCTCAGTTCTAAG--CCTTGATAGCCTAAGAAAAAAGGAGTACCCAG-----------------GCAGA-------------------------------CACAGTGGTGGCTCTTCTCCACC------CCTCTCTCTTGAC-CAAAGG--CTGAAGCAAGATGGGCACCAACTCCTCTCTGGTTACTGAGTTCGTGCTGGTGGGCTTCTCACGTCTGGTCCACCTGCAGGGCATCCTCTTCTCCCTGTTCTTGACCGTCTACCTGCTCACTGTGGCAGGCAATCTCCTCATCGTGGCGCTAGTCTCCACAGATGCAGCGTTGCAGTCTCCCATGTACTTCTTCCTCCGCATCCTCTCAGCCCTGGAGATCTGCTACACGTCGGTCACAGTCCCCTTGCTGCTGCACCATCTGCTCACTGGCCGGCGCCACATCTCGCGCTCTGGCTGCGCTCTGCAAATGTTCTTTTTCCTTTTCTTTGGTGCCACCGAGTGCTGCCTGCTGGCTGCCATGGCCTATGACCGCTATGCTGCGATCTGCGAGCCCCTGCGCTACCAGGTGCTGCTCAGCCGCAGGGTTTGTGTGCAGCTCGCGGG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26178369 659 +  26524999 -AGGAGTCCCAGGA------------------------------------------------------------------------CCA-CTGAAG--AGAAA-------GCCAAGCTCTC-------------------------------------AGGGCTCAGTGCTCACCTGG---CTCCAATGACAGCAGGTCTGACAGGGACATGGCCT-------GTGCTGCC-----TCACGGGCTATGAAACCCTGAAATAAAGGGTA-TTCCAGCGTCTTCCTGAGCAGGTGCAGCAAGGGGCCACCTCTGTCCATGTC-ACAGCTCCGCAGCTG-------------CTGTTTC-TCTGTCCT-------------GTGGAAGTGGCATGAGCACCAACAGCTCCGTGGTGACCGAGTTCATCCTTGTGGGCTTCTCCCATCTGGCCAACCTGCAGGGCTGGCTCTTCACATTCTTCCTTGCCGTCTATCTGCTCACCGTGGCAGGCAACCTCCTCATAGTGCTGCTGGTCTCCACGGATTCTGCTCTCCAGTCCCCCATGTACTTCTTCCTGCGCATGCTGTCGGCCCTGGAGATCAGCTACACATCTGTCACCATGCCCCTGTTGCTGCACCACCTCCTCACAGGCCAGCGCCGCATACCTCGCTCAGGCTGTGCTCTCCAGATGTTCTTTTTCCTTTTCTTCGGTGCCACAGAGTGTTGCCTCCTGGCTGCCATGGCCTATGACCGCTATGCAGCCATCTGCAAACCCCTTCGCTACACACTTCTGCTGAGTCCCCGGGTGTGCCTGCAGCTAGCAGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH569098           226312 622 -    254539 AGGCTCTACCAGAA------------------------------------------------------------------------AGAGCTcaggagaggga-------accagactcaa-------------------------------------agtcagaaa---ctgctcaaggttcccagagggagcagaggc----agaacccggactcaatgctgagctgcctaatttcaaacaccatgAGGTCT--AAAGGAAGGACG-TCCCAATGCGT---GGAATGGATGC-------------------CCACCTCTATAACTCCAT--------CTTTTCCTTTCCATTTCTTTTGTCCTTGGGTCCAAAGGCATGAGAGCAGGATGAAGGCAAAC-CCACCATGGTGACTGAATTAATCCTTGAAGGC-TCCCCTACC-AGCTCACTTCCAGGGTTTGCTCTTCTCG--CTCTCCCACCATCTACCTTCTCACCATAGTA-ACAACCTCCTGGC-----------------CCATTACTGCCCTCCAATCCCCCATATACTTCTTCCTTCACATCCTCTCAGCCCTGGAGACTGGCTACACCTCCATCACCGTCC--------------------CTTATTGGTTGGTACCAGAGCCCATGCTCTGGCTTTGCCCTCCGGATGTTCTTCTTTCTCT--TTTGGTGCCATGGAGTGTTATCTCCTGGCAGCCATGGCCTACGACCACTAGGCAGTCATCTGCAAACCCCTCCACTACCCACTGCCGCTGAGCCAACAGGTGTGTCTACAGCTAGCAGG
i dasNov3.JH569098         C 0 C 0

a score=25896.000000
s hg38.chr6_GL000254v2_alt   705818 8 +   4827813 GTCGGCGT
s panTro5.chr6             29679275 8 + 175400573 GTCGGCGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29910018 8 + 173848474 GTCGGCGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5720363 8 +   6154872 GTCGGCGT
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1    2639516 8 -   2996164 GTCTGCGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     391162 8 +    766320 GTCTGCGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28848994 8 -  71996105 GTCTGCGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      12296 8 +    290775 GTCTGCCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2450211 8 -   3067355 GTCTGCGT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     467314 8 +    730504 GACAGCAT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2150688 8 -   2232465 GACAGCAT
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57775854 8 -  94987271 CGCCGCGT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26179028 8 +  26524999 GCTGGCAT
i canFam3.chr35            C 0 C 0
s dasNov3.JH569098           226934 7 -    254539 GTCTTGG-
i dasNov3.JH569098         C 0 C 0
e macFas5.chrUn_KE146120      11602 1000 +     27237 M

a score=4026523.000000
s hg38.chr6_GL000254v2_alt   705826 505 +   4827813 GGGCCTGTGGGGTGCTGGTGGGGCTGGGCCACACCCCTTTCATCTTCTCTTTGCCCTTCTGCGGCCCC-AATACCATCCCGCAGTTCTTCTGTGAGATCCAGCCTGTCCTGCAGCTGGTATGTGGAGACACCTCGCTTAATGAACTGCAGATTATCCTGGCAACAGCCCTCCTCATCCTCTGCCCCTTTGGCCTCATCCTGGGCTCCTACGGGCGTATCCTCGTTACCATCTTCCGGATCCCATCTGTTGCGGGCCGCCGCAAGGCCTTCTCCACCTGCTCCTCCCACCTGATCATGGTCTCCCTCTTCTATGGCACCGCACTCTTTATCTATATTCGCCCTAAGGCCAGCTACGATCCGGCCACTGACCCTCTGGTGTCCCTCTTCTATGCTGTGGTCACCCCCATCCTCAACCCCATCATCTACAGCCTGCGGAACACAGAGGTCAAAGCTGCCCTAAAGAGAACCATCCAGAAAACGGTGCCTATGGAGATTTGAAAAGGGGG---
s panTro5.chr6             29679283 505 + 175400573 GGGCCTGTAGGGTGCTGGTGGGGCTGGGCCACACCTCTTTCATCTTCTCTTTGCCCTTCTGCGGCCCC-AATGCCATCCCGCAGTTCTTCTGTGAGATCCAGCCTGTCCTGCAGCTGGTATGTGGAGACACCTCGCTTAATGAACTGCAGATTATCCTGGCAAGAGCCCTCCTCATCTTCTGCCCCTTTGGCCTCATCCTGGGCTCCTACGGGCGTATCCTCGTTACCATCTTCCGGATCCCATCTGTTGCGGGCCGCCGCAAGGCCTTCTCCACCTGCTCCTCCCACCTGATTGTGGTCTCCCTCTGCTATGGCACCGCCATCTTTATCTATATTCGCCCTAAGGCCAGCTACGATCCGGCCACTGACCCTCTGGTGTCCCTCTTCTATGCTGTGGTCACCCCCATCCTCAACCCCATCATCTACAGCCTGCGGAACACAGAGGTCAAAGCTGCCCTAAAGAGAACCATCCAGAAAACGGTGCCTATGGAGATTTGAAAAGGGGG---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29910026 505 + 173848474 GGGCCTGTAGGGTGCTGGTGGGGCTGGGCCACACCTCTTTCATCTTCTCTTTGCCCTTCTGCGGCCCC-AATGCCATCCCGCAGTTCTTCTGTGAGATCCAGCCTGTCCTGCAGCTGGTATGTGGAGACACCTCGCTTAATGAACTGCAGATTATCCTGGCAGGAGCCCTCCTCATCCTCTGCCCCTTTGGCCTCATCCTGGGCTCCTACGGGCGTATCCTCGTTACCATCTTCCGGATCCCATCTGTTGCGGGCCGCCGCAAGGCCTTCTCCACCTGCTCCTCCCACCTGATTGTGGTCTCCCTCTTCTATGGCACCGCCATCTTTATCTATATTCGCCCTAAGGCCAGCTACGATCCGGCCACTGACCCTCTGGTGTCCCTCTTCTATGCTGTGGTCACCCCCATCCTCAACCCCATCATCTACAGCCTGCGGAACACAGAGGTCAAAGCTGCCCTAAAGAGAACCATCCAGAAAACGGTGCCTATGGAGATTTGAAAAGGGGA---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5720371 505 +   6154872 GGGCCTGTGGGGTGCTGGTGGGGCTGGGCCATACCTCTTTCATCTTCTTTTTGCCC-TCTGCAGCCCCAAATGCCATCGTGCAGTTCTTCTGTGAGATCCAGCCTGTCCTGTAGCTGGTATATGGAGACACCTCGCTTAATGAACTGCAGATTATCCTGGCAGCAGCCCTCCTCATCCTCTGTCCCTTTGGCCTCATCCTGGGCTCCTACGGGCGTATCCTCGTTACCATCTTCCGGATCCCATCTGTTGCGGGCCTCCGCAAGGCCTTCTCCACCTGCTCCTCCCACCTGATCGTGGTCTCCCTCTTCTATGGCACCGCCATCTTTATCTATATTCGCCCTAAGGCCAGCTACGATCCGGCCACTGACCCTCTGGTGTCCCTCTTCTATGCTATGGTCACCCCCATCCTCAACCCCATCATCTACAGCCTGCGGAACACAGAGGTCAAAGCTGCCCTAAAGAGAACCATCCAGAAAACGGTGCCTATGGAGATTTGAAAAGGGGG---
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      12602 505 +     27237 GGGCCTGTGGTGTGCTGGTGGGGTTGGGCCACACCTCTTTCATCTTCTCCTTGCCCTTCTGTGGTCCC-AGTGCCATCCCGCACTTCTTCTGTGAGATCCAGCCTGTCCTGCAGCTGGTATGTGGGGACACCTCGCTTAATGAACTGCAGATTATCCTGGCCGCAGCGCTCATCATCCTCTGCCCCTTTGGCCTCATCCTGGGCTCCTACGGGCGTGTCCTGGTTACCATCTTCCGGATCCCATCTGCTGTCGGCCGCCGTAAGGCCTTCTCCACCTGCTCCTCCCACCTGATCGTGGTCTCCCTCTTCTATGGCACCGCCATCTTTATCTATATTCGCCCTAAGGCCAGTTACGATCCAGTTACTGACCCTCTGGTGTCCCTCATCTATGCTGTGGTCACCCCCATCCTCAACCCCATTATCTACAGCCTGCGGAACACAGAGGTCAAAGCTGCCCTAAAGAGAACCATGCAGAAAATGGTGCCTATGGAGATTTGAAAAGGGGG---
i macFas5.chrUn_KE146120   M 1000 C 0
s macNem1.NW_012011356v1    2639524 505 -   2996164 GGGCCTGTGGTGTGCTGGTGGGGTTGGGCCACACCTCTTTCATCTTCTCCTTGCCCTTCTGTGGTCCC-AGTGCCATCCCGCACTTCTTCTGTGAGATCCAGCCTGTCCTGCTGCTGGTATGTGGGGACACCTCGCTTAATGAACTGCAGATTATCCTGGCCGCAGCGCTCATCATCCTCTGCCCCTTTGGCCTCATCCTGGGCTCCTACGGGCGTGTCCTGGTTACCATCTTCCGGATCCCATCTGCTGTCGGCCGCCGTAAGGCCTTCTCCACCTGCTCCTCCCACCTGATCGTGGTCTCCCTCTTCTATGGCACCGCCATCTTTATCTATATTCGCCCTAAGGCCAGTTACGATCCAGTTACTGACCCTCTGGTGTCCCTCATCTATGCTGTGGTCACCCCCATCCTCAACCCCATTATCTACAGCCTGCGGAACACAGAGGTCAAAGCTGCCCTAAAGAGAACCATGCAGAAAATGGTGCCTATGGAGATTTGAAAAGGGGG---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     391170 505 +    766320 GGGCCTGTGGGGTGCTGGTGGGGTTGGGCCACACCTCTTTCATCTTCTCCTTGCCCTTCTGTGGTCCC-AATGCCATCCCGCACTTCTTCTGTGAGATCCAGCCTGTCCTGCAGCTGGTGTGTGGGGACACCTCGCTTAATGAACTGCAGGTTATCCTGGCCGCAGCGCTCATCATCCTCTGCCCCTTTGGCCTCATCCTGGGCTCCTACGGGCATATCCTGGTTACCATCTTCCGGATCCCATCTGCTGTTGGCCGCCGTAAGGCCTTCTCCACCTGCTCCTCCCACCTGATCGTGGTCTCCCTCTTCTATGGCACCGCCATCTTTATCTATATTCGCCCTAAGGCCAGTTACGATCCGGTTACTGACCCTCTGGTGTCCCTATTCTATGCTGTGGTCACCCCCATCCTCAACCCCATTATCTACAGCCTGCGGAACACAGAGGTCAAAGCTGCCCTAAAGAGAACCATGCAGAAAATGGTGCCTATGGAGATTTGAAAAGGGGG---
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28849002 505 -  71996105 GGGCCTGTGGGGTGCTGGTGGGGTTGGGCCACACCTCTTTCATCTTCTCCTTGCCCTTCTGTGGTCCC-AGTGCCATCCCGCACTTCTTCTGTGAGATTCAGCCTGTCCTGCAGCTGGTGTGTGGGGACACCTCGCTTAATGAACTGCAGATTATCCTGGCCGCAGCCCTCATCATCCTCTGCCCCTTTGGCCTCATCCTGGGCTCCTACGGGCGTATCCTGGTTACCATCTTCCGGATCCCATCTGCTGTCGGCCGCCGCAAGGCCTTCTCCACCTGCTCCTCCCACCTGATCGTGGTCTCCCTCTTCTATGGCACCGCCATCTTTATTTATATTCGCCCTAAGGCCAGTTACGATCCGGTCACTGACCCTCTGGTGTCCCTCTTCTATGCTGTGGTCACCCCCATCCTCAACCCCATTATCTACAGCCTGCGGAACACAGAGGTCAAAGCTGCCTTAAAGAGAACCATGCAGAAAATGGTGCCTATGGAGATTTGAAAAGGGGG---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      12304 505 +    290775 GGGCCTGTGGGGTGCTGGTGGGGTTGGGCCACACCTCTTTCATCTTCTCCTTGCCCTTCTGTGGTCCC-AATGCCATCCCGCACTTCTTCTGTGAGATCCAGCCTGTCCTGCAGCTGGTGTGTGGGGACACCTCGCTTAATGAACTGCAGGTTATCCTGGCCGCAGCCCTCATCATCCTCTGCCCCTTTGGCCTCATCCTGGGCTCCTACGGGCATATCCTGGTTACCATCTTCCGGATCCCATCTGCTGTTGGCCGCCGTAAGGCCTTCTCCACCTGCTCCTCCCACCTGATCGTGGTCTCCCTCTTCTATGGCACCGCCATCTTTATCTATATTCGCCCTAAGGCCAGTTACGATCCGGTTACTGACCCTCTGGTGTCCCTATTCTATGCTGTGGTCACCCCCATCCTCAACCCCATTATCTACAGCCTGCGGAACACAGAGGTCAAAGCTGCCCTAAAGAGAACCATGCAGAAAATGGTGCCTATGGAGATTTGAAAAAGGGG---
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2450219 505 -   3067355 GGGCCTGTGGGGTGCTGGTGGGGTTGGGCCACACCTGTTTCATCTTCTCCTTGCCCTTCTGTGGTCCC-AATGCCATCCCACACTTCTTCTGTGAGATCTAGCCTATCCTGCAGCTGGTGTGTGGGGACACCTCGCTTAATGAACTGCAGATTATCCTGGCCGCAGCCCTCATCATCCTCTGCCCCTTTGGCCTCATCCTGGGCTCCTACGGGCGTATCCTGGTTACCATCTTCCGGATCCCATCTGCTGTTGGCCGCCGCAAAGCCTTCTCCACCTGCTCCTCCCACCTGATTGTGGTCTCCCTCTTCTATGGCACCGCCATCTTTATCTATATTCGCCCTAAGGCCAGTTACGATCCGGTCACTGACCCTCTGGTGTCCCTCTTCTATGCTGTGGTCACCCCCATCCTCAACCCCATTATCTACAGCCTGCGGAACACAGAGGTCAAAGCTGCCCTAAAGAGAACCATGCAGAAAATGGTGCCTATGGAGATTTGAAAAGGGGG---
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     467322 505 +    730504 GGACCTGCGGGGCAATGGTGGGGCTCGGCCACACGTCCTTCATCTTCTCCTTGCCCTTCTGCGGCCCC-AATGCCATCCCACACTTCTTCTGTGAGATCCAGCCTGTCCTGCAGTTGGTGTGTGGAGACACCTCACTTAATGAATTGCAGATAATTTTGGCTGCTGGCCTCATCATCCTCTGCCCCTTTGGCCTCATCCTGGGATCCTACTGGCGTATCCTGGCTACCATCTTCCAGATCCCATCTGCTGCTGGTCGCCATAAGGCCTTCTCCACCTGCTCCTCCCACCTGATTGTGGTCTCCCTCTTCTATGGCACTGCCATCTTTATCTACATTCGCCCTAAAGCCAGCTACAATCCAGCCACTGACCCTCTTCTGTCCCTCTTCTATGCTGTGGTCACCCCCATCCTCAATCCCATCATCTATAGCCTGCGGAATGCTGATGTCAAGGCTGCCCTGAAGAGGACCATCCAGAAAATGGGGCCTACAGGGATTTGAAAAGGGGG---
i proCoq1.NW_012152574v1   C 0 I 149
s otoGar3.GL873742          2150696 505 -   2232465 GGGCCTGTGGGGCAATGTTGGGTCTTGGCCATACCGCCTTCATCTTCTCCTTGCCCTTTTGCGGCCCC-AATGCCATCCCACACTTCTTCTGTGAGATCCAGCCTGTCCTGCAGCTGGTGTGTGGAGACACCTCACTTAATGAATTGCAGATTATTTTGACTGCTGCCCTCATCATCCTCTGCCCCTTTGGCCTAATCCTGGGCTCGTATGGGCATATTCTGGCTGCTATCTTCAGGATCCCATCTGCTGCTGGCCGTCGCAAGGCCTTCTCCACCTGCTCCTCCCACCTTATCGTGGTCTCCCTCTTCTATGGCACTGCCATCTTTATCTATATTCGCCCTAAGGCCAGCTATGATCCAGCCACTGATCCTCTTCTGTCCCTCTTCTATGCTGTGGTCACCCCCATCCTCAATCCCATCATCTACAGCCTGAGGAACACTGATGTCAAAGCTGCCTTGAAGAGAATCATCCAGAAAATGGGATCTACAGAGATTTTAAAAGGCAG---
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57775862 505 -  94987271 GGTCTTGCGGGGCTCTAGTGGGGCTGGGCCACACCTCCTTCATCTTCTCCTTGCCCTTCTGTGGCCCC-AACGCTGTCCCTCACTTCTTCTGTGAGATCCAGCCGGTGCTGCAGTTGGTGTGTGGAGACACCTCGCTCAACGAGCTGCAGATTATCCTGGCTGCCGCCCTTATCATCTTGTGCCCCTTTGGCCTCATTCTTAGCTCCTACGGACGGATCCTGGTCACCATTTTCCGCATCCCATCCGCTGCTGGTCGCCGCAAAGCCTTCTCCACCTGTTCCTCCCACCTGGTAGTGGTGTCTCTCTTCTATGGTACTGCCATCTTTATCTATATCCGCCCTAAGGCCAGCTATGACCCAACCACGGACCCCCTGCTGTCCCTCTTCTATGCTGTGATCACCCCCATCCTCAATCCTGTCATCTACAGCCTGAGGAATGCAGACGTCAAGGCCGCCCTAAAAAGAAGCATCCAGAAAATGGGGCCCTCCGAGATTTGACAAAGGGT---
i mm10.chr17               C 0 C 0
s canFam3.chr35            26179036 505 +  26524999 GGGCCTGTGGGGCAATGGTGGGCCTGGGCCACACCTCCTTCATCTTCTCCCTGCCCTTCTGTGGCCCC-AATGCCATCCCACACTTCTTTTGTGAGATCCAGCCCATCCTGCAGCTGGTATGTGGAGACACCTCACTCAATGAGCTGCAGATTATCCTAGCTGCTGCCCTCATCATCCTCTGTCCCTTCGGCCTCATCCTGGGCTCCTATGGGCATATCCTGGCCACGATTTTCCGGATGCCGTCTGTTGCTGGCCGCCGCAAGGCCTTCTCCACCTGCTCCTCTCACCTGCTGGTGGTCTCCCTCTTCTATGGCACGGCCATCTTCATTTACATCCGCCCTAAGGCCAGTTATAATCCAGCCACTGACCCTGTGCTGTCTCTCTTCTATGCTGTGGTCACCCCCATCCTTAATCCCATCATCTATAGCCTGCGGAATGCGGATGTCAAGGCTGCCCTGAGGCGAACATTCCAGAAAATGAAGCCTGCGGACACTTGACAAGGGGG---
i canFam3.chr35            C 0 C 0
s dasNov3.JH569098           226941 446 -    254539 GGGCCTGTGGAGCCATGGCAGCACTGGGCCACACCTCCTTCACCTTCTCCTTGGCCTTCTGTGGCCCT-GATGCCATCCC----CACTTCTGTGAGCTTCAGCTATACCTAGAGCT-GTGTGGGGAGACCCCTCACTCCATGAATTACACATAATCCTGG-TGCTGCCCTCATCACC--CCACCCCTCTGGCCTCATCATGGGC--------------------CACCATCTTCCAG-TCCCAT---------------GCATGGCCTTCTCCA-CTGCTCCCATCA-CTGGCTGTGGCCTCCCTCTTCTATG-----GCCATCTTGACCTACATCCACCCTAATGCCAGCTATGATCCAGCCACTGTCCCTCCACTGTCCCTCCCCCATGCCTTGGCCACCCCTATCCTCACCCCCATCATCAATAGCCTGTGAAACGCTTGTGTCAAGGCTTCCTTGAAGAGGGCC---CAGAAAATGG--------GAAACACGACAAGGCAATGA
i dasNov3.JH569098         C 0 C 0

a score=788805.000000
s hg38.chr6_GL000254v2_alt   706331 176 +   4827813 CGATA-GTGACTTCTGTGCAGTGCTCTGAGTCAGTCCCAAATACCTAAGGATCAAAGAGTCTCCCTTAAGG----TCTTTCTTCACA--TTAGGGGAGGGCCAGCCTG--TCAGAAAGACAAACTTATCTTTGAAAAGC----------TACCGTAGTCAAATGCGCTCCTCAGA----CCCTCACAACACATACATAT
s panTro5.chr6             29679788 176 + 175400573 CGATA-GTGACTTCTGTGCAGTGCTCTGAGTCAGTCCCAAATACCTAAGGATCAAAGGGTCTCCCTTAAGG----TCTTTCTTCACA--TTAGGGGAAGGCCAGCCTG--TCAGAAAGACAAACTTATCTTTGAAAAGC----------TACCGTAGTCAAATGCTCTCCTCAGA----CCCTCACAACACATACATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29910531 176 + 173848474 AGATA-GTGACTTCTGTGCAGTGCTCTGAGTCAGTCCCAAATACCTAAGGATCAAAGGGTCTCCCTTAAGG----TCTTTCTTCACA--TTAGGGGAAGGCCAGCCTG--TCAGAAAGACAAACTTATCTTTGAAAAGC----------TACCGTAGTCAAATGCTCTCCTCAGA----CCCTCACAACACATACATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5720876 176 +   6154872 CGATA-GTGACTTCTGTGCAGTGCTCTGAGTCAGTCCCAAATACCTAAGGATCAAAGGGTCTCCCTTAAGG----TCTTTCTTCACA--TTAGGGGAGGGCCAGCCTG--TCAGAAAGACAAACTTATCTTTGAAAAGC----------TACCGTAGTCAAATGCTCTCCTCAGA----CCCTCACAACACATACATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      13107 176 +     27237 CGATA-GTAACTTCTGTGCAGCGCTCTGAGTCAGTCCCAAATAACTAGGGATCAAAGGGTCTCCCTTAAGG----TCTTTCTTCACA--TTAGGGGAGGGCCAGCCTG--TCAGAAAGACAAACTCATCTTTGAAAAGC----------TACCGTAGCCAAATGCTCTCCTCAGA----ACCTCGCGACACATACATAT
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2640029 176 -   2996164 CGATA-GTAACTTCTGTGCAGCGCTCTGAGTCAGTCCCAAATAACTAAGGATCAAAGGGTCTCCCTTAAGG----TCTTTCTTCACA--TTAGGGGAGGGCCAGCCTG--TCAGAAAGACAAATTCATCTTTGAAAAGC----------TACCGTAGCCAAATGCTCTCCTCAGA----ACCTCGCGACACATACATAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     391675 176 +    766320 CGATA-GTGACTTCTGTGCAGCACTCTGAGTCAGTCCCAAATAACTAAGGATCAAAGGGTCTCCCTTAAGG----TCTTTCTTCACA--TTAGGGGAGGGCCAGCCTG--TCAGAAAGACAAACTTATCTTTGAAAAGC----------TACCGTAGCCAAATGCTCTCCTCAGA----ACCTCACGACACATACATAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28849507 176 -  71996105 CGATA-GTGACTTCTGTGCAGTGCTCTGAGTCAGTCCCAAATAACTAAGGATCAAAGGGTCTCCCTTAAGG----TCTTTCTTCACA--TTAGGGGAGGGCCAGCCTG--TCAGAAAGACAAACTTATCTTTGAAAAGC----------TACCGTAGCCAAATGCTTTCCTCAGA----ACCTCACGACACATACATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      12809 176 +    290775 CGATA-GTGACTTCTGTGCAGCGCTCTGAGTCAGTCCCAAATAACTAAGGATCAAAGGGTCTCCCTTAAGG----TCTTTCTTCACA--TTAGGGGAGGGCCAGCCTG--TCAGAAAGACAAACTTATCTTTGAAAAGC----------TACCGTAGCCAAATGCTCTCCTCAGA----ACCTCACGACACATACATAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2450724 176 -   3067355 CGATA-GTGACTTCTGTGCAGTGCTCTGAGTCAGTCCCAAATAACTAAGGATCAAAGGGTCTCCCTTAAGG----TCTTTCTTCACA--TTAGGGGAGGGCCAGCCTG--TCAGAAAGACAAACTTATCTTTGAAAAGC----------TACCGTAGCCAAATGCTCTCCTCAGA----ACCTCAGGACACATACATAT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2151201 152 -   2232465 TGAAATGTGACGGTTATTCAGAACTCCCATTCAGCTCCAAATAACCAAGGATTAAAGA-------------------------------------GAGAACGGGCTTGGCTTCAAAAAACAAATTCAACTTTAAAGAGC----------TACTATAGTCAAGTCTTCTTCTTAGACCCCACCCCACAGCATGCACACAC
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57776367 114 -  94987271 GGGAG-GTGACTCTTGAACAGAATTCCG----TGTTCCACATTACCAAGGATCAAAG--------------------------------------GAGAGAAGACCTG------GAACACAGACTTA-CCTTAAAGAGC----------TATT--------------------GA----CTCCCTCAACATTCACTCA-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26179541 158 +  26524999 TGACA-ATGGAGGCTGT----CACTCCCAGTCACCTCC-CATCACCAAGCATCAAAGG--------TAAGGAAGCATGGTCCTCAC---CTGGGCAGGGGGCAGCCTG--TC--AAGAACAGAGTTATCTTGGAAGAA--------------TGGAGCCAAA--CCACTTTCAGA----CCCCTGCAACCCACACACAC
i canFam3.chr35            C 0 I 2
s dasNov3.JH569098           227387 176 -    254539 TGATG-GTGGGTGTGGCACAGCACTTCCAGCCAGCCCCAAGTTACTGAGGACCACGGGG-------AAAGG----ACACACGTCCCACCTTATGAGAGGACCATCCAG--TCGAGAAGACAAACTTATCCTTGAAGAACCTTGAAGAAGCACAGGGGCCAGAGCCCCTCTCC-------ATCCAGCAACACACACTC--
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     467827 149 +    730504 I

a score=1021613.000000
s hg38.chr6_GL000254v2_alt   706507 164 +   4827813 TCTATTCCGCTTTCTGTTGCAAGAAAC-----------AAGAAA-----CCCAG-GATGGAGGA-----------TCAATTTCA--GAAG--CAGA-GCAAGTTGACAACCAGGGATAAAGTTACA-------------AAATAT-TATCCTTATCAGACTAGCAAGGTAATAAAATTTTCAGC------CACAACAATGATCC-------TTAAAG------TCATTTG
s panTro5.chr6             29679964 164 + 175400573 TCTATTCTGCTTTCTGTTGCAAGAAAC-----------AAGAAA-----CCCAG-GATGGAGGA-----------TCAATTTCA--GAAG--CAGA-GCAAGTTGACAACCAGGGATAAAGTTACA-------------AAATAT-TATCCATATCAGACTAGCAAGGTAATAAAATTTTCAGC------CACAACAATGATCC-------TTAAAG------TCATTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29910707 164 + 173848474 TCTATTCTGCTTTCTGTTGCAAGAAAC-----------AAGAAA-----CCCAG-GATGGAGGA-----------TCAATTTCA--GAAG--CAGA-GCAAGTTGACAACCAGGGATAAAGTTACA-------------AAATAT-TATCCATATCAGACTAGCAAGGTAGTAAAATTTTCAGC------CACAACAATGATCC-------TTAAAG------TCATTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5721052 164 +   6154872 TCTATTCTGCTTTCTGTTGCAAGAAAC-----------AAGAAA-----CCGAG-GATGGAGGA-----------TCAATTTCA--GAAG--CAGA-GCAAGTTGACAACCAGGGATAAAGTTACA-------------AAATAT-TATCCTTATCAGACTAGCAAGGTAATAAAATTTTCAGC------CACAACAATGATCC-------TTAAAG------TCATTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      13283 164 +     27237 TCTATTCTGCTTTCTGTTGCAAGAAAC-----------AAGAAA-----CCCAG-GATGGAGGA-----------TCAATTTCA--GAAG--CAGA-GCAAGTTGACAAACAGGGATAAAGTTACA-------------AAATGT-TATCCCCATCAGACTATCAAGGTAATAAAATTTTCAGC------CACAGCAATGATCC-------TTAAAG------TCATTTG
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2640205 164 -   2996164 TCTATTCTGCTTTCTGTTGCAAGAAAC-----------AAGAAA-----CCCAG-GATGGAGGA-----------TCAATTTCA--GAAG--CAGA-GCAAGTTGACAAACAGGGATAAAGTTACA-------------AAATGT-TATCCGCATCAGACTATCAAGGTAATAAAATTTTCAGC------CACAGCAATGATCC-------TTAAAG------TCATTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     391851 164 +    766320 TCTATTCTGCTTTCTGTTGCAAGAAAC-----------AAGAAA-----CCCAG-GATGGAGGA-----------TCAATTTCA--GAAG--CAGA-GCAAGTTGACAAACAGGGATAAAGTTACA-------------AAATGT-TATCCCCATCAGACTATCAAGGTAATAAAATTTTCAGC------CACAGCAATGATCC-------TTAAAG------TCATTTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28849683 164 -  71996105 TCTATTCTGCTTTCTGTTGCAAGAAAC-----------AAGAAA-----CCCAG-GATGGAGGA-----------TCAATTTCA--GAAG--CAGA-GCAAGTTGACAAACTGGGATAAAGTTACA-------------AAATGT-TATCCCCGTCAGACTATCAAGGTAATAAAATTTTCAGC------CACAGCAATGATCC-------TTAAAG------TCATTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      12985 164 +    290775 TCTATTCTGCTTTCTGTTGCAAGAAAC-----------AAGAAA-----CCCAG-GATGGAGGA-----------TCAATTTCA--GAAG--CAGA-GCAAGTTGACAAACAGGGATAAAGTTACA-------------AAATGT-TATCCCCATCAGACTATCAAGGTAATAAAATTTTCAGC------CACAGCAATGATCC-------TTAAAG------TCATTTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2450900 164 -   3067355 TCTATTCTGCTTTCTATTGCAAGAAAC-----------AAGAAA-----CCCAG-GATGGAGGA-----------TCAATTTCA--GAAG--CAGA-GCAAGTTGACAAACAGGGATAAAGTTACA-------------AAATGT-TATCCCCATCAGACTATCAAGGTAATAAAATTTTCAGC------CACAGCAATGATCC-------TTAAAG------TCATTTG
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     467976 156 +    730504 TCTATCCTGCCTTCTCTTGCAGGAAAC-----------AAGACA-----CCCAG-GATGTAGGA-----------TCAATTTTA--CAAG--AAAA-GCAAGCTGACAACTAGTGGGAAAATTACC-------------AAATAC-CATGCCCACCAGACTATCAAGGTAATAAAATTTTCAGC------CGCGGGA---------------CAAAG------CCATTTG
i proCoq1.NW_012152574v1   I 149 C 0
s otoGar3.GL873742          2151353 156 -   2232465 TCTATCCTGCCTTCTCTTACAAGAAAC-----------AAGACC-----CTCAG-GATGGAGGA-----------TCAATTTTA--TAAG--AACG-GCAAGCTGACAACTAGGAGACAAATTACA-------------AAATAT-CATCCCCACCAGACTACCAAGGCAACACAATTTTCAGC------CACAGGA---------------TAAAG------CCATTTG
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57776481 209 -  94987271 TCTATTCTGTCTTCTGTTACAAAGGGTTGATTTTGCCAAAGTAAATTGGCCCAGAggtggtggcagtgcatgccttaaattcca--gaagtccagaggcaa------aggctaggagaaAATcacacacacacacacacacacacacacacacacacGACTATGGAGGTGATAAAATTTTCACCTATATACAGAGCAATAGTCC-------TGAACG------TTATCTG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26179701 176 +  26524999 GCTATTCTGCCTTCTGTCCTAAGGAAC-----------AGGATA-----CCCAG-GATGGATGA-----------TCACCTGTGTCGAAG--CAGA-GCAAGTCAAC--CCTAAGGACATGTTATA-------------AAATGT-CCT-CGCACCAGACCACCAAGGTAATGAAACCTCCAGG------CACAATACTGATTCCtttgttttaaggttttatttatttg
i canFam3.chr35            I 2 I 189
s dasNov3.JH569098           227563 157 -    254539 CCTATTCTGCATCCTGT-GCAAGAAGC-----------AG---------CCCAG-GAGGGAGGA-----------TCAGCTT-A--GAAG--CAGA-AGAAGTTGACAGCTAGAGG-GAAGTTAAA-------------AAACGC-CATCTTCACCAGATTACCAAGGTAACATCATGTCCAGC------CATAGCAATGCTCC-------TCAGAG------CCATTGG
i dasNov3.JH569098         C 0 C 0

a score=430560.000000
s hg38.chr6_GL000254v2_alt   706671 80 +   4827813 ACATTTGTACGTCCTAGGTAAGGCATTTGTTTCTTGGGTG-GTACTACT----GGTTAGTACC-------------TTAGCAAACATAATTATACCTA
s panTro5.chr6             29680128 80 + 175400573 ACATTTGTACGTCCTAGGTAAGGCATTTGTTTCTTGGGTG-GTACTACT----GGTTAGTACC-------------TTAGCAAACATAATTATACCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29910871 80 + 173848474 ACATTTGTACGTCCTAGGTAAGGCATTTGTTTCTTGGGTG-GTACTACT----GGTTAGTACC-------------TTAGCAAACATAATTATACCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5721216 80 +   6154872 ACATTTGTACGTCCTAGGTAAGGCATTTGTTTCTTGGGTG-ATACTACT----GTTTAGTACC-------------TTAGCAAACATAATTATACCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      13447 80 +     27237 ACGTTTGTACATCTTAGGTAAAGCATTTGTTTCTTGGGTG-GTACTACT----GATTAGTACC-------------TTAGCAAACATAATTATACCTA
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2640369 80 -   2996164 ACGTTTGTACATCTTAGGTAAAGCATTTGTTTCTTGGGTG-GTACTACT----GATTAGTACC-------------TTAGCAAACATAATTATACCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     392015 80 +    766320 ACGTTTGTACATCTTAGGTAAAGCATTTGTTTCTTGGGTG-GTACTACT----GATTAGTACC-------------TTAGCAAACATAATTATACCTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28849847 80 -  71996105 ACGTTTGTACATCTTAGGTAAGGCATTTGTTTCTTGGGTG-GTACTACT----GATTAGTACC-------------TTAGCAAACATAATTATACCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      13149 80 +    290775 ACATTTGTACATCTTAGGTAAGGCATTTGTTTCTTGGGTG-GTACTACT----GATTAGTACC-------------TTAGCAAACATAATTATACCTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2451064 80 -   3067355 ACATTTGTACATCTTAGATAAGGCATTTGTTTCTTGGGTG-GTACTACT----GACTAGTACC-------------TTAGCAAACATAATTATACCTA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     468132 79 +    730504 ACATTTGTACATCCCAGGTAAGAGATTTGCTTCCCTGCTG-GTACTATT----GA-TAATACA-------------TTAGCACACAAAATTATACCTG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2151509 78 -   2232465 ACATTTGTACATCCTAGGTAAGGTATTTGTTTCCCCAGTG-GTGCTACT----GG-TAATACA-------------TTAGCACACATAACTATA-CTA
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57776690 88 -  94987271 GCATTGAGACA-------TAGGG---TTACTTCCAGACTGTATACTAATTCAGTATTAGTATACAGTTATATATAGCTAGCACACATAAGTAGATCCA
i mm10.chr17               C 0 I 146
s canFam3.chr35            26180066 77 +  26524999 ACATCTGTA--TCCCAGGTCAAG-ACTGGCCTCCCGTGTG-GCCCTGCT----GCTCTGTGCA-------------CCCATGCACACAGGGACACCTA
i canFam3.chr35            I 189 C 0
s dasNov3.JH569098           227720 56 -    254539 GCATCCACACATCATAGG--------------------GG-GCACTGCT----GATTGGTACT-------------T----ATGTGTAACCATACATG
i dasNov3.JH569098         C 0 C 0

a score=19488.000000
s hg38.chr6_GL000254v2_alt   706751 4 +   4827813 Atta-
s panTro5.chr6             29680208 4 + 175400573 Atta-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29910951 4 + 173848474 Atta-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5721296 4 +   6154872 ATTA-
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      13527 4 +     27237 Ttta-
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2640449 4 -   2996164 TTTA-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     392095 4 +    766320 Atta-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28849927 4 -  71996105 ATTA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      13229 4 +    290775 ATTA-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2451144 4 -   3067355 Atta-
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     468211 4 +    730504 ATTA-
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2151587 4 -   2232465 ATTA-
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35            26180143 4 +  26524999 ACTA-
i canFam3.chr35            C 0 C 0
s dasNov3.JH569098           227776 5 -    254539 GTTAA
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57776778 146 -  94987271 I

a score=48195.000000
s hg38.chr6_GL000254v2_alt   706755 7 +   4827813 aatctac
s panTro5.chr6             29680212 7 + 175400573 aatctac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29910955 7 + 173848474 aatctac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5721300 7 +   6154872 AATCTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      13531 7 +     27237 aatctac
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2640453 7 -   2996164 AATCTAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     392099 7 +    766320 aatctac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28849931 7 -  71996105 AATCTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      13233 7 +    290775 AATCTAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2451148 7 -   3067355 aatctac
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     468215 7 +    730504 AATTTGT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2151591 7 -   2232465 AATCTGT
i otoGar3.GL873742         C 0 I 449
s mm10.chr17               57776924 7 -  94987271 AATCTGT
i mm10.chr17               I 146 C 0
s canFam3.chr35            26180147 7 +  26524999 CATCCAT
i canFam3.chr35            C 0 C 0
s dasNov3.JH569098           227781 7 -    254539 AACCCAT
i dasNov3.JH569098         C 0 C 0

a score=838740.000000
s hg38.chr6_GL000254v2_alt   706762 160 +   4827813 tacca-gcta-aaga-cagattcctcaagaagtaaggagtggccacaaaagtttcaatgaaggTAAGTTCTTATGGAAATTCAtatgccgcagaggttaagagaacagattctgatgtcagacagacttaaagt-caagtctt---------atttttt-ccagctagttagct
s panTro5.chr6             29680219 160 + 175400573 tacca-gcta-aaga-cagattcctcaagaagtaaggagtggccacaaaagtttcaatgaaggTAAGTTCTTAAGGAAATTCATATGCCgcagaggttaagagaacagattttgatgtcagacagacttaaagt-caagtctt---------atttttt-ccagctagttagct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29910962 160 + 173848474 tacca-gcta-aaga-cagattcctcaagaagtaaggagtggccacaaaagtttcaatgaaggTAAGTTCTTATGGAAATTCATATGCCgcagaggttaagagaacagattttgatgtcagacagacttaaagt-caagtctt---------atttttt-ccagctagttagct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5721307 160 +   6154872 TACCA-GCTA-AAGA-CAGATTCCTCAAGAAGTAAGGAGTGGCCACAAAAGTTTCAATGAAGGTAAGTTCTTATGGAAATTCACATGCCACAGAGGTTaagagaacagattttgatgtcagacagacttaaagt-gaagtctt---------atttttt-ccagctagttagct
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      13538 162 +     27237 tacca-gcta-aaga-cagattcctcaagatgtaaggagtggccacaaaggtttcagtgaaggTAAGTTCTTATGGAAATTCAtatgccacagagattaagagaacagattttgatgtcagacagacttaaagtccaagtctc---------attttttcccagctagttagct
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2640460 162 -   2996164 TACCA-GCTA-AAGA-CAGATTCCTCAAGATGTAAGGAGTGGCCACAAAGGTTTCAGTGAAGGTAAGTTCTTATGGAAATTCAtatgccacagagattaagagaacagattttgatgtcagacagacttaaagtccaagtctc---------attttttcccagctagttagct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     392106 162 +    766320 tacca-gcta-aaga-cagattcctcaagaagtaaggagtggccacaaaggtttcaatgaaggTAAGTTCTTATGGAAATTCAtatgccacagagattaagagaacagatttcgatgtcagacagacttaaagtccaagtctc---------atttttttccagctagtaagct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28849938 162 -  71996105 TACCA-GCTA-AAGA-CAGATTCCTCAAGATGTAAGGAGTGGCCACAAAGGTTTCAATGAAGGTAAGTTCTTATGGAAATTCAtatgccacagagattaagagaacagatttcgatgtcagacagacttaaagtccaagtctc---------attttttcccggctagttagct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      13240 162 +    290775 TACCA-GCTA-AAGA-CAGATTCCTCAAGAAGTAAGGAGTGGCCACAAAGGTTTCAATGAAGGTAAGTTCTTATGGAAATTCAtatgccacagagattaagagaacagatttcgatgtcagacagacttaaagtccaagtctc---------atttttttccagctagtaagct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2451155 162 -   3067355 tacca-gcta-aaga-cagattcctcaagaagtaaggagtggccacaaaggtttcaatgaaggTAAGTTCTTATGGAAATTCAtatgccacagagattaagagaacagatttcgatgtcagacagacttaaagtccaagtctc---------atttttttccagctagttagct
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     468222 158 +    730504 CACCA-GGCA-AACAGTAAATTCCTTAAGAAGTGAGGAGTGGTCAGAAAAGTTTCAATGAAGGTAAGTTCTTATGGAAATcagtatgacacag---ttaagagaatagattttgatgtcaaataaactcgaatt-caagtctt---------aattctt-ccagctgattggct
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57776931 156 -  94987271 -CCCT-AGTA-AAAA-CAAATCTCTTAAAAAGTGAAAGGCAATCAGAAAGAATC--ATGGAAGTCAGATCTTATTAACGCTAATACAGCATAGAGTTTGAAAGGATTAATATTGATGC-------ACTTAAATT-CAAGtattttatttggggtttttt----gttggttttct
i mm10.chr17               C 0 I 406
s canFam3.chr35            26180154 152 +  26524999 CAGCA-GGCACAAAG-CAACGTCCCCAGGATCTGAGGTTGGGCCAGGGAAGTTTCAATGGAGGTAA-TTCTTATGGGAATCAATATGACTCAGTGGT---AAGAGTAGATTTTCATGTCAA----ACTTTGCTT-CAAGGCTT---------GTTTCCT-TCACCTGATTCAC-
i canFam3.chr35            C 0 C 0
s dasNov3.JH569098           227788 157 -    254539 TGCCAGGCCA-AAAG-CAGGGTC--TGGAGAGTGAGGAGGGGCTGGAAAGGTTCCAGGGAAGGTAAACTCTTACGGGAATCAGCAGGAGACAGGCATTCAGAGGg--gactttgatgtcagaaagacttcagtt-ggaatcct---------gagtctt-ccagcagattagct
i dasNov3.JH569098         C 0 C 0
e otoGar3.GL873742          2151598 449 -   2232465 I

a score=163049.000000
s hg38.chr6_GL000254v2_alt   706922 31 +   4827813 aagtgatcacaggtgaatgatataatctctc
s panTro5.chr6             29680379 31 + 175400573 aagtgatcacaggtgaatgatataatctctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29911122 31 + 173848474 aagtgatcacaggtgaatgatataatctctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5721467 31 +   6154872 aagtgatcacaggtgaatgatataatctctc
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      13700 31 +     27237 atgtcatcacaggcaaatgatataatctctc
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2640622 31 -   2996164 atgtcatcacaggcaaatgatataatctctc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     392268 31 +    766320 atgtcatcacaggcgagtgatataatctctc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28850100 31 -  71996105 atgtcatcacaggcgaatgatataatctctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      13402 31 +    290775 atgtcatcacaggcgagtgatataatctctc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2451317 31 -   3067355 atgtcatcacaggcgaatgatataatctctc
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     468380 31 +    730504 gtgtgatcacgggcaaatgatgtaatctcac
i proCoq1.NW_012152574v1   C 0 C 0
s canFam3.chr35            26180306 30 +  26524999 AGGAGATGGCAGG-AAAGGATAtcatctccc
i canFam3.chr35            C 0 C 0
s dasNov3.JH569098           227945 31 -    254539 atgtgatgacatgcaaatgatatcatttctc
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57777087 406 -  94987271 I
e otoGar3.GL873742          2151598 449 -   2232465 I

a score=38115.000000
s hg38.chr6_GL000254v2_alt   706953 9 +   4827813 tgagcctta
s panTro5.chr6             29680410 9 + 175400573 tgagcctta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29911153 9 + 173848474 tgagcctta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5721498 9 +   6154872 tgagcctta
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      13731 9 +     27237 tgagtctta
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2640653 9 -   2996164 tgagtctta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     392299 9 +    766320 tgagtctta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28850131 9 -  71996105 tgagtctta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      13433 9 +    290775 tgagtctta
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2451348 9 -   3067355 tgagtctta
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35            26180336 9 +  26524999 tggtctata
i canFam3.chr35            C 0 C 0
s dasNov3.JH569098           227976 9 -    254539 ctggcttta
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57777087 406 -  94987271 I
e proCoq1.NW_012152574v1     468411 0 +    730504 C
e otoGar3.GL873742          2151598 449 -   2232465 I

a score=31301.000000
s hg38.chr6_GL000254v2_alt   706962 9 +   4827813 attttttta
s panTro5.chr6             29680419 9 + 175400573 attttttta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29911162 9 + 173848474 attttttta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5721507 8 +   6154872 a-tttttta
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      13740 9 +     27237 atGttttta
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2640662 9 -   2996164 atgttttta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     392308 9 +    766320 attttttta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28850140 9 -  71996105 attttttta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      13442 9 +    290775 atattttta
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2451357 9 -   3067355 attttttta
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH569098           227985 9 -    254539 atctcctta
i dasNov3.JH569098         C 0 I 1
e mm10.chr17               57777087 406 -  94987271 I
e proCoq1.NW_012152574v1     468411 0 +    730504 C
e canFam3.chr35            26180345 0 +  26524999 C
e otoGar3.GL873742          2151598 449 -   2232465 I

a score=1190005.000000
s hg38.chr6_GL000254v2_alt   706971 313 +   4827813 aattttattttagattcaagggtacatgtgcaggtttgttatataggtaaatttcacctcacagtgattatttagtcacccaggtaataagcatagtacctgataagcagtttattgatcctcacccttcttctatcctccaccctcaattatgtcctggtatctgttgttcctttctttgtgttcatgtgtactcagtg-ttaggtcccacttttaagtgagaatatatggtatttggttttctgttcctgtgttagtttgcttagaataatgacctccagttccatccatgttgctgcaaaggacataatct
s panTro5.chr6             29680428 311 + 175400573 acttttattttagattcaagggtacatgtgcaggtttgttatataggtaaatttcacctcacagttattatttagtcacccaggtaataagcatagtacctgataagcagtttattgatcctcacc---cttctatcctccaccctcaattatgtcctggtatctgttgttcctttctttgtgttcatgtgtactcagtgtttagttcccacttttaagtgagaatatatggtatttggttttctgttcctgtgttagtttgcttagaataatgacctccagttccatccatgttgctgcaaaggacataatct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29911171 311 + 173848474 acttttattttagattcaagggtacatgtgcaggtttgttatataggtaaatttcacctcacagtgattatttagtcacccaggtaataagcatagtacctgataagcagtttattgatcctcacc---cttctatcctccaccctcaattatgtcctggtatctgttgttcctttctttgtgttcatgtgtactcagtgtttagttcccacttttaagtgagaatatatggtatttggttttctgttcctgtgttagtttgcttagaataatgacctccagttccatccatgttgctgcaaaggacataatct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5721515 314 +   6154872 acttttattttagattcaagggtacatgtgcaggtttgttatataggtaaatttcacctcacagtgattatttagtcacccaggtaataagcatagtacctgataagcagtttattgatcctcacccttcttctattctccacccttaattatgtcttggtatctgttgttcctttctttgtgttcatgtgtactcagtgtttagctcccacttttaagtgagaacatatggtatttggttttctgttcctgtgttagtttgcttagaataatgacccccagttccatccatgttgctgcaaaggacataatct
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      13749 300 +     27237 acttttattttagattcaagggtacatgtgcaggtttgttatataggtaaatttcatctcaaaatgattatttagtcacccaggtaataagcatagtacctgataagcag-------------acccttcttctatcctccaccctcaattatgtcctggtatctattgttcctttctttgtgttcatgtgtactcagtgtttagctcccacttttaactgagaacatatggtatttggttttctgttcctgcattagtttgcttagaataacaaccttcagttccatgcatgttgctgcaaaggacataatc-
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2640671 300 -   2996164 acttttattttagattcaagggtacttgtgcaggtttgttatataggtaaatttcatctcaaaatgattatttagtcacccaggtaataagcatagtacctgataagcag-------------acccttcttctatcctccaccctcaattatgtcctggtatctattgttcctttctttgtgttcatgtgtactcagtgtttagctcccacttttaactgagaacatatggtatttggttttctgttcctgcattagtttgcttagaataacaaccttcagttccatgcatgttgctgcaaaggacataatc-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     392317 314 +    766320 acttttattttagattcaagggtacatgtgcaggtttgttatataggtaaatttcatctcaaaatgattatttagtcacccaggtaataagcatagtacctgttaggcagttttttgatcctcacccttcttctatcctccaccctcaattatgtcctggtatctattgttcctttctttgtgttcatgtgtactcagtgtttagctcccacttttaagtgagaacatatggtatttggttttctattcctgcattagtttgcttagaataacaaccttcagttccacgcatgttgctgcaaaggacataatct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28850149 314 -  71996105 acttttattttagattcaagggtacatgtgcaggtttgttatataggtaaatttcatctcaaaatgattaattaggcacccaggtaataagcatagtacctgataagcagttttttgatcctcacccttcttctatcctccaccctcaattatgtcctggtatctattgttcctttctttgtgttcatgtgtactcagtgtttagctcccacttttaagtgagaacatatggtatttggttttctgttcctgcattagtttgcttagaataacaaccttcagttccatgcatgttgctgcaaaggacataatct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      13451 314 +    290775 acttttattttagattcaagggtacatgtgcaggtttgttatataggtaaatttcatctcaaaatgattatttagtcacccaggtaataagcatagtacctgttaggcagttttttgatcctcacccttcttctatcctccaccctcaattatgtcctggtatctattgttcctttctttgtgttcatgtgtactcagtgtttagctcccacttttaagtgagaacatatggtatttggttttctattcctgcattagtttgcttagaataacaaccttcagttccacgcatgttgctgcaaaggacataatct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2451366 311 -   3067355 acttttattttagattcaagggtacatgtgcaggcttgttatataggtaaatttcatctcaaaatgattatttaatcacccaggtaataagcatagtacctgataagcagttttttgatcctcacc---cttctatcctccaccctcaattatgtcctggagtctattgttcctttctttgtgttcatgtgtactcagtgtttagctcccacttttaagtgagaagatatggtatttggttttctgttcctgcattagtttgcttagaataacaaccttcagttccatgcatgttgctgcaaaggacataatct
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57777087 406 -  94987271 I
e dasNov3.JH569098           227994   1 -    254539 I
e proCoq1.NW_012152574v1     468411   0 +    730504 C
e canFam3.chr35            26180345   0 +  26524999 C
e otoGar3.GL873742          2151598 449 -   2232465 I

a score=116584.000000
s hg38.chr6_GL000254v2_alt   707284 35 +   4827813 gtttgtttttt----gttttgttctgttttgtttttatg
s panTro5.chr6             29680739 35 + 175400573 gtttgtttttt----gttttgttctgttttgtttttatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29911482 35 + 173848474 gtttgtttttt----gttttgttctgttttgtttttatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5721829 35 +   6154872 gtttgtttttt----gttttgttctgttttgtttttatg
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      14049 31 +     27237 ---tgtttgtt-----ttttGTTTTGTTTTGTTTTTATG
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2640971 31 -   2996164 ---tgtttgtt-----ttttgttttgttttgtttttatg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     392631 34 +    766320 gtttgtttgtt-----ttttgttttgttttgtttttatg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28850463 34 -  71996105 gtttgtttgtt-----tttTGTTTTGTTTTGTTTTTATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      13765 39 +    290775 Gtttgtttgttttttgttttgttttgttttgtttttatg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2451677 34 -   3067355 GTTTGTTTGTT-----TTTTGTTTTGTTTTGTTTTTATG
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57777493 35 -  94987271 ATTTTTTTTTT----CAACTAATCAGCTGTGTGATCATA
i mm10.chr17               I 406 I 16
e dasNov3.JH569098           227994  1 -    254539 I
e proCoq1.NW_012152574v1     468411  0 +    730504 C
e canFam3.chr35            26180345  0 +  26524999 C
e otoGar3.GL873742          2151598 449 -   2232465 I

a score=116918.000000
s hg38.chr6_GL000254v2_alt   707319 19 +   4827813 tgagccttaattttcttat
s panTro5.chr6             29680774 19 + 175400573 tgagccttaattttcttat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29911517 19 + 173848474 tgagccttaattttcttat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5721864 19 +   6154872 tgagccttaattttcttat
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      14080 19 +     27237 tgagccttaattttcttat
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2641002 19 -   2996164 tgagccttaattttcttat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     392665 19 +    766320 tgagccttaattttcttat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28850497 19 -  71996105 tgagccttaattttcttat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      13804 19 +    290775 tgagccttaattttcttat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2451711 19 -   3067355 tgagccttaattttcttat
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     468411 19 +    730504 tgagctttaatttccttat
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2152047 19 -   2232465 tgagccttaatttccttgt
i otoGar3.GL873742         I 449 C 0
s mm10.chr17               57777544 18 -  94987271 TGCACTTTAAATCT-TTAT
i mm10.chr17               I 16 C 0
e dasNov3.JH569098           227994  1 -    254539 I
e canFam3.chr35            26180345  0 +  26524999 C

a score=30667.000000
s hg38.chr6_GL000254v2_alt   707338 5 +   4827813 ctata
s panTro5.chr6             29680793 5 + 175400573 ctata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29911536 5 + 173848474 ctata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5721883 5 +   6154872 ctata
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      14099 5 +     27237 ctata
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2641021 5 -   2996164 ctata
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     392684 5 +    766320 ctata
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28850516 5 -  71996105 ctata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      13823 5 +    290775 atata
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2451730 5 -   3067355 ctata
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     468430 5 +    730504 ccata
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2152066 5 -   2232465 acata
i otoGar3.GL873742         C 0 C 0
s mm10.chr17               57777562 5 -  94987271 CCATA
i mm10.chr17               C 0 C 0
s dasNov3.JH569098           227995 5 -    254539 ccatg
i dasNov3.JH569098         I 1 C 0
e canFam3.chr35            26180345 0 +  26524999 C

a score=2615844.000000
s hg38.chr6_GL000254v2_alt   707343 474 +   4827813 aagttgcggtaacaacagagtctaattcattgggtttttgtgaggatttgtagacttgcaaacaatcaagcttaatatctggcacaaaatagtatcttgatagatgttTTTGTTAGCA--------------------AGTCAGACAGGTCAGCGCAAAGGCTAATGTTTGGCTCACATGGGGTGACTTTGCT--GGGAAGAGAAGGGTATTCTTGAAATATCAGTGGCATTGGAACCCACAAGAGACCCAGAGGAAGGTGGAAGAAGAGGC-TCTATACATCACTGTTAACAGAAA-----CTGCTACC-------------------CAGCACAGATATGA--GCCAAAAACTACCAAGACACGGAAGAGCAAATATAAG-GGCTATGATATGCAGGA--------GAGTCAGTGAA----------------------------------------------------------------------------------------CTGCAGAAC--------------------------------------------------------------------AAATAAGTGGAATAAGCTGAGAGGGTGAAT-----------------CAAAAACAGCCATCTCCAAGAGGCAAGTATTTATTAATAATTAAAAGTGC-------AATCTACATACTTTA---TATCATTCC-
s panTro5.chr6             29680798 474 + 175400573 aagttgcggtaacaagagagtctaattcattgggtttttgtgaggatttgtagacttgcaaacaatcaagcttaatatctggcacaaaatagtatcttgatagatgTTTTTGTTAGCA--------------------AGTCAGACAGGTCAGCGCAAAGGCTAATGTTTGGCTCACATGGGGTGACTTTGCT--GAGAAGAGAAGGGTATTCTTGAAATATCAGTGGCATTGGAACCCACAAGAGACCCAGAGGAAGGTGGAAGAAGAGGC-TCTATACATCACTGTTAACAGAAA-----CTGCTACC-------------------CAGCACAGATATGA--GCCAAAAACTACCAAGACACGGAAGAGCAAATATAAG-GGCTATGACATGCAGGA--------GAGTCAGTGAA----------------------------------------------------------------------------------------CTGCAGAAC--------------------------------------------------------------------AAATAAGTGGAATAAGCTGAGAGGGTGAAT-----------------CAAAAACAGCCATCTCCAAGAGGCAAGTATTTATTAATAATTAAAAGTGC-------AATTTACATACTTTA---TATCATTCC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29911541 474 + 173848474 aagttgcggtaacaagagagtctaattcattgggtttttgtgaggatttgtagacttgcaaacaatcaagcttaatatctggcacaaaatagtatcttgatagatgTTTTTGTTAGCA--------------------AGTCAGACAGGTCAGCGCAAAGGCTAATGTTTGGCTCACATGGGGTGACTTTGCT--GAGAAGAGAAGGGTATTCTTGAAATATCAGTGGCATTGGAACCCACAAGAGACCCAGAGGAAGGTGGAAGAAGAGGC-TCTATACATCACTGTTAACAGAAA-----CTGCTACC-------------------CAGCACAGATATGA--GCCAAAAACTACCAAGACATGGAAGAGCAAATATAAG-GGCTATGACATGCAGGA--------GAGTCAGTGAA----------------------------------------------------------------------------------------CTGCAGAAC--------------------------------------------------------------------AAATAAGTGGAATAAGCTGAGAGGGTGAAT-----------------CAAAAACAGCCATCTCCAAGAGGCAAGTATTTATTAATAATTAAAAGTGC-------AATTTACATACTTTA---TATCATTCC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5721888 474 +   6154872 aagctgtggtaacaacagagtctaattcattgggtttttgtgaggatttgtagacttgcaaacaatcaagcttaatatctggcacaaaatagtatcttgatagatgTTTTTGTTGGCA--------------------AGTCAGACAGGTCAGCGCAAAGGCTAATGTTTGGCTCACATGGGGTGACTTTGCT--GGGAAGAGAAGGGTATTTTTGAAATATCAGTGGCATTGGAACCCACAAGAGACCCAGAGGAAGGTGGAAGAAGAGGC-TCTATACATCACTGTTAACAGAAA-----TTGCTACC-------------------CAGCACAGATATGA--GCCAAAAACTACCAAGACATGGAAGAGCAAATATAAG-GGCTATGACATGCAGGA--------GAGTCAGTGAA----------------------------------------------------------------------------------------CTGCAGAAC--------------------------------------------------------------------AAATAAATGGAATAAGCTGAGAGGGTGAAT-----------------CAAAAACAGCCATCTCCAAGAGGCAAGTATTTATTAATAATTAAAAGTGC-------AATCTACATACTTTG---TATCATTCC-
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      14104 472 +     27237 aagctgtgataacaaaagagtcgaattcattggggttttgtgagaatttgtagacttgcaaacaatccagtttagtatctggcacaaaatagtatcctgatagatgttTTTGTTAGCC--------------------AGTCAGACAGGTCAGTATGAAGGCTAATGTTTGGCTCACATGGGGTGCCTTTGCT--GGGGAGAGAAGGGTATTCTTGAAATATCAGTGGCATTGGGACC--CAAGAGACCCAGAGGAAGGTGGAAGAAGAGGC-TCTATACATCACTGCTAACAGAAA-----CTGCTACC-------------------CAGCACAGACATGA--GCCAAAAACTACCAAGACACAGAAGAGCAAATATTAG-GGCTATGACATGCAGGA--------GAGTCAGTGAA----------------------------------------------------------------------------------------CTGCAGAAC--------------------------------------------------------------------AAATAAATGAGATAAGCTGAGAGGGTGAAT-----------------CACAAAAAGCCATCTCCAAGAGGCAAGTATTTATTAATAATTAAAAATGC-------AATCTACATACTTCA---TATCATTCC-
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2641026 472 -   2996164 aagctgtgataacaaaagagtcgaattcattggggttttgtgagaatttgtagacttgcaaacaatccagtttagtatctggcacaaaatagtatcctgatagatgttTTTGTTAGCC--------------------AGTCAGACAGGTCAGTATGAAGGCTAATGTTTGGCTCACATGGGGTGCCTTTGCT--GGGGAGAGAAGGGTATTCTTGAAATATCAGTGGCATTGGGACC--CAAGAGACCCAGAGGAAGGTGGAAGAAGAGGC-TCTATACATCACTGCTAACAGAAA-----CTGCTACC-------------------CAGCACAGACATGA--GCCAAAAACTACCAAGACACAGAAGAGCAAATATTAG-GGCTATGACATGCAGGA--------GAGTCAGTGAA----------------------------------------------------------------------------------------CTGCAGAAC--------------------------------------------------------------------AAATAAATGAGATAAGCTGAGAGGGTGAAT-----------------CACAAAAAGCCATCTCCAAGAGGCAAGTATTTATTAATAATTAAAAATGC-------AATCTACATACTTCA---TATCATTCC-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     392689 472 +    766320 aagctgtgataacaacagagtcgaattcattggggttttgtgagaatttgtagacttccaaacaatccagcttagtatctggcacaaaatagtatcctgatagatgttTTTGTTAGCC--------------------AGTCAGACAGGTCAGCATGAAGGCTAATGTTTGGCTCACATGGGGTGCCTTTGCT--GGGGAGAGAAGGGTATTCTTGAAATATCAGTGGCATTGGGACC--CAAGAGACCCAGAGGAAGGTGGAAGAAGAGGC-TCTATACATCACTGCTAACAGAAA-----CTGCTACC-------------------CAGCACAGACATGA--GCCAAAAACTACCAAGACACAGAAGAGCAAATATTAG-GGCTATGACATGCAGGA--------GAGTCAGTGAA----------------------------------------------------------------------------------------CTGCAGAAC--------------------------------------------------------------------AAATAAATGAGATAAGCTGAGAGGGTGAAT-----------------CACAAAAAGCCATCTCCGAGAGGCAAGTATTTATTAATAATTAAAAATGC-------AATCTACATACTTCA---TATCATTCC-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28850521 472 -  71996105 aagctgtgataacaaaagagtcgaattcattggggttttgtgagaatCTGTAGACTTGCAAACAATCCAGCTTAGTATCTGGGACAAAATAGTATCCTGATAGATGTTTTTGTTAGCC--------------------AGTCAGACAGGTCAGCATGAAGGCTAATGTTTGGCTCACATGGGGTCCCTTTGCT--GGGGAGAGAAGGGTATTCTTGAAATATCAGTGGCATTGGGACC--CAAGAGACCCAGAGGAAGGTGGAAGAAGAGGC-TCTATACATCACTGCTAACAGAAA-----CTGCTACT-------------------CAGCACAGACATGA--GCCAAAAACTACCAAGACACAGAAGAGCAAATATTAG-GGCTATGACATGCAGGA--------GAGTCAGTGAA----------------------------------------------------------------------------------------CTGCAGAAC--------------------------------------------------------------------AAATAAATGAGATAAGCTGAGAGGGTGAAT-----------------CACAAAAAACCATCTCCAAGAGGCAAGTATTTATTAATAATTAAAAATGC-------AATCTACATACTTTA---TATCATTCC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      13828 472 +    290775 aagctgtgataacaaaagagtcgaattcattggggttttgtgagaatttgtagacttccaaacaatccagcttagtatctggcacaaaataGTATCCTGATAGATGTTTTTGTTAGCC--------------------AGTCAGACAGGTCAGCATGAAGGCTAATGTTTGGCTCACATGGGGTGCCTTTGCT--GGGGAGAGAAGGGTATTCTTGAAATATCAGTGGCATTGGGACC--CAAGAGACCCAGAGGAAGGTGGAAGAAGAGGC-TCTATACATCACTGCTAACAGAAA-----CTGCTACC-------------------CAGCACAGACATGA--GCCAAAAACTACCAAGACACAGAAGAGCAAATATTAG-GGCTATGACATGCAGGA--------GAGTCAGTGAA----------------------------------------------------------------------------------------CTGCAGAAC--------------------------------------------------------------------AAATAAATGAGATAAGCTGAGAGGGTGAAT-----------------CACAAAAAGCCATCTCCGAGAGGCAAGTATTTATTAATAATTAAAAATGC-------AATCTACATACTTCA---TATCATTCC-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2451735 474 -   3067355 aagctgtgataacaacagagtcgaattcattagggttttgtgagaatttgtagacttgcaaacaatctggcttagtatctggcacaaaataGTATCCTGATAGAAGTTTTTGTTAGCC--------------------AGTCAGACAGGCCAGCATGAAGGCTAATGTTTGGCTCACATGGGGTGCCTTTGCT--GGGGAGAGAAGAGTATTCTTGAAATATCAGTGGCACTGGGACC--CAAGAGACCCAGAGGAAGGTGGAAGACAAGGC-TCTATACATCACTGCTAACAGAAA-----CTGCTACC-------------------CAGCACAGACATGACTACCAAAAACTACCAAGACACAGAAGAGCAAATATTAG-GGCTATGACATGCAGGA--------GAGTCAGTGAA----------------------------------------------------------------------------------------CTGCAGAAC--------------------------------------------------------------------AAATAAATGAGATAAGCTGATAGGGTGAAT-----------------CACAAAAAGCCATCTCCAAGAGGCAAGTATTTATTAATAATTAAAAATGC-------AATCTACATACTTTA---TATCATTCC-
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     468435 472 +    730504 aagttggaataaccatagagtctatttctttgggtttttgtgaggagttgtagtctcgttaatcaccgagcttagtatctggcacaaaatagtgtctcaatagatgTTTTTATGAGCT---------------------GTCAGACAGGTTAGCACAGAAGATAATGTCAACCTCACATTGGATATCTTTGCTGGGGGGAGAGAAGGGTATTACTGAAATGTCAGTGATGTTGGCCCC--AAGAC-ACTGAAAGGAAGGTGGAGGAAGAGAC-TGTACACATCACTGTTGCAGGAAA-----TTGCCACC-------------------CA-TACAGACGTAA--ACCAAAAATAACCAGGACACCAAAGAGCAAATATAATCAGCTATGACATGCAGGA--------GAGTCAACGAC----------------------------------------------------------------------------------------CTGCAGAAT--------------------------------------------------------------------AAATAAATGAGATAAGCTGAAGAGATTAAT-----------------CAAAAAAAGACATTGCCAAGAGGCAAGTATTTATTAAGAGTTAAAAATAT-------AATCTACATACTTTT---TATCATTCC-
i proCoq1.NW_012152574v1   C 0 I 23622
s otoGar3.GL873742          2152071 495 -   2232465 aagttgggataaccatacgatttatttcttggggtgtttgtaaggattcatagtcctgttaattaccaagcttagtgtctggcacaaaatagtgtctcaatagatgttttctcaatctattTTCTCAATAGATGAATGAGTCAGACAGGTCAGCACAGAAGGTAATGTCCAGCTCACACCAGATGCCTTTTCTAGGGGAAAAGAAGGGTATTATTGAGATTTCAGTGGTATTGGAAAT--GAAGCAACTAAAAGGAAGGTGGACCAAGCAGC-TCTACACATCATTGCTACAGGAAA-----CTGCCACC-------------------CAGTAAAGACATGA--ACCAAAAGCAACCAGGACACCAAAGTGCAGG-AGAATCAGCTATGACACGCAGGG--------GAGTCAATGAC----------------------------------------------------------------------------------------CTGCAGAAC--------------------------------------------------------------------AAGTAAGTGAGATAAGCAGAAGGGGCTAGT-----------------CAAAAAGAGATACCTCCAAGAGGCAAGTATTTATTCATAATTAAAAATAC------AAATCCTCATACTTTT---TATTATACC-
i otoGar3.GL873742         C 0 I 1
s mm10.chr17               57777567 639 -  94987271 GAACTTAAATTACAAAGAAGTCAATTACTCTGAGAGCTTGTGAAAACCCA----------------------TGCTACATGG---------GTATCTCTACAAATATTTTTAATAGTA--------------------AGTCAGACAGATTTGTACAGAAAGCAGTGTCCATCTCACAGTGTGTGCCTTTGCT--GGGGGAATAAGGGTATTTTT---ATGTCGATGAGGTTGGTACT--TAGAAAACTCAGAGGAAGGTAGAGAAAGATAT---CACACAAGACTGC---AGGAAA-----ATgcccccccccccccgccgcccccTGCATCAGTGAAACAA--ACCAAGAGCATCCAGGACACTGAAGAG-GAATATAAT-GGCCCTGAAATACAAGAGCCCGCGGGAGACAGTTAATAATGAAAAGTTCtggtggtgcaatccacaacccaatgctttggaggctgaggcaggaggactactgcaagttccaggccagtcagggctacagaataaaaccctgtccaaagaaataagaGTCTCCCCGGGGATCAAGAGGACACCAATGATTCCTAATAATTAAAATGCATAAGGCATGATGAGCGGGAGAGTAAACAGGCTGTATTATACACAGGAATAAGACTGTCAAAGAAATTTAGTTTTAAAAGAAGAAAAGTGTAAAATAAAATCCACATGATTTT---TATCATTCC-
i mm10.chr17               C 0 I 1
s canFam3.chr35            26180345 441 +  26524999 aagtctggacaataatacagtctatttctttgggggtttctgagtatttatagactcataaagtatcaagcttactctctggcacaaaacagtggctggataaatgttTTTAT--GCA--------------------GGTCAGACAGGTGGGCACAGACGACACTATCCACCCCATGC-AGGTGCTTCTGCT-GGGGGAGAGAAGGGTGTTCTTAGGATGTC--TGGTGCTGGGAGC--CAAGAGACCCCCCACA-------------------CACACACCATGGCTG-CGGACACTGTCCTGCAACC-------------------CAATGCAGACCC----ACCAGAGGCCAGCAGGACACCGGAGAGCCAGTCTGAG-GGC---AAAGCGCAGAG--------GCATCTGTGCA----------------------------------------------------------------------------------------C-GCAGAAT--------------------------------------------------------------------CCAGATCTGGGACTAGCTGGG--------T-----------------CACCAGA--TAGGTCTCAGGGGGCAAGTACCCACCAGCAAATACAGACAT-------GATCCCCCTCCTTTTTCCTGTTGTTCC-
i canFam3.chr35            C 0 I 1
s dasNov3.JH569098           228000 422 -    254539 aagctgggataataat---------ttctttgggtttttctgggaa-ccatagacttgcaaatcgccacacttaatatctggaacaaaattatgtctcaatgaatgtttttattaATG--------------------AGCCAGTCC-ATTAGCACAGGGGAT-GCATCGGGCTCACACTGGGTGCTCGGATT-GGGGGAGGGAACGGTGTTCTTGGAATGCCAGTGCCATTGGGAAC--CAAGAGACACAACGGAGGGTGGAGAAAGAGACCCCCAAACAC----GCTA-CAGGAA-----GCACCAC--------------------CAGCGC-GGTGTAA--ACCAAAGATGA-CATGACACTGAAGAGCAAATGTGAT-GCCAACGAAGGGTGGGC--------AAGTCAAAGGC----------------------------------------------------------------------------------------GTACAGAGC--------------------------------------------------------------------AAAGCACTGAGCTGAGC-------------------------------------------------GGGGCAAGTATTCACAGGCAATT-CAACTAG-------GATCCGTGTCCTGTT---CCTTGTTCCC
i dasNov3.JH569098         C 0 C 0

a score=1941082.000000
s hg38.chr6_GL000254v2_alt   707817 437 +   4827813 AACACTTTATTCAAATGCAACAGTATTTATTGCAAACTTTCTATGTGCCTATTGCTC--T-------TTGGCACTGTGGAGAATAT----CAAGTACATACAGGGTGGTGATTCTGTCCAGAGAGCACTTGCTGTCC-TGTTA---AG---AAAGCACTGATTCTCATGAAACTATCAGAGAAC------AGTTTGCAAAGTAAGAA-----AACACTCAAAATG-TAA----------AGCGAAAAGACAAAGGTGTTACTC---------------CCTG-----TCCCCAC---------------CCCC-------CAAAA-----------------------------------------------GGGGTTGTG-------TGGCCT--------TCCTCAAACTCATTTTA----TCAATGT----------------GGAAAACCTCACAACTACTGCTCTTCA------AT--TG-AACAAAACTGCAATAGCGAGGAACAGCATTTAAGAAGGGTTGCCTAAAGGATTGTCAAAACAGCTTTTCCTCTGATAATTTAAAATCTAAATCTTATCCCCAAGCTAAAGCAGATGAGCACAGAGC
s panTro5.chr6             29681272 437 + 175400573 AACACTTTATTCAAATGcaacagtatttattgcaaactttctatgtgcctattgctc--t-------ttggcactgtggagaatat----caagtacatacagggtggtgattctgtccagagagcacttgctgtcc-tgtta---ag---aaagcactgattctcatgaaactataagagaac------agtTTGCAAAGTAAGAA-----AACACTCAAAATG-TAA----------AGCGAAAAGACAAAGGTGTTACTC---------------CCTG-----TCCCCAC---------------CCCC-------CAAAA-----------------------------------------------GGGGTTGTG-------TGGCCT--------TCCTCAAACTCATTtta----tcaatgt----------------ggaaaacctcacaactactgctcttca------at--tg-aacaaaactgcaatagcgaggaacagcatttaagaaggattgcttaaaggattgtcaaaacagcttttcctctgataatttaaaatctaaatcttatccccaagctaaagcagatgagcacagagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29912015 437 + 173848474 AACACTTTATTCAAATGcaacagtatttattgcaaactttctatgtgcctattgctc--t-------ttggcactgtggagaatat----caagtacatacagggtggtgattctgtccagagagcacttgctgtcc-tgtta---ag---aaagcactgattctcatgaaactataagagaac------agtTTGCAAAGTAAGAA-----AACACTCAAAATG-TAA----------AGCGAAAAGACAAAGGTGTTACTC---------------CCTG-----TCCCCAC---------------CCCC-------CAAAA-----------------------------------------------GGGGTTGTG-------TGGCCT--------TCCTCAAACTCATTTTA----TCAATGT----------------GGAAAACCTCACAACTACTGCTCTTCA------AT--TG-AACAAAACTGCAATAGCGAGGAACAGCATTTAAGAAGGATTGCTTAAAGGATTGTCAAAACAGCTTTTCCTCTGATAATTTAAAATCTAAATCTTATCCCCAAGCTAAAGCAGATGAGCACAGAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5722362 437 +   6154872 AACACTTTATTCAAATGCaccagtatttattgcaaactttctatgtgcctattgctc--t-------ttggcactgtggagaatat----caagtatgtacagggtggtgattctgtccagagagcacttgctgtcc-tgtta---ag---aaagcactgattctcatgaaactatcagagaac------agtTTGCAAAGTAAGAA-----AACACTCAAAATG-TAA----------AGCGAAAAGACAAAGGTGTTACTC---------------CCTG-----TCCCCAC---------------CCCC-------CAAAA-----------------------------------------------GGGGTTGTG-------TGGCCT--------TCCTCAAACTCATTTTA----TCAATGT----------------GGAAAACCTCACAACTACTGCTCTTCA------AT--TG-AACAAAACTTCAATAGCGAGGAACAGCATTTAAGAAGGGTTGCCTAAAGGATTGTTAAAACAGCTTTTCCTCTGATAATTTAAAATCTAAATCTTATCCCCAGGCTAAAGCAGATGAGCACAGAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      14576 434 +     27237 AACACTTTATTCAAATGCACCACTATTTATTGCAAACATTCTAGGTGCCTGTTGCTC--T-------TTGGCACTGTGGAGAATAT----CAAGTACATACAGGGTGGTAATTTTGTCCAGAAAGCACTTGCTGTCT-CATTA---AG---AAAACACTGATTCTCATGAAACTATCAGAGAAC------AGTTTGCAAAGTAAGAA-----AACGCTCACAATG-TAA----------AGCGAAAAGAC-AAGGTGTTACTC---------------CCTG-----TCCCCAC---------------CCCT-------CAAAA-----------------------------------------------GGGGTTGTA-------TGGCCT--------TCCTTATACTCATTTTA----TCAATGT----------------GGAAaacctcaaaactactgctcttca------at--tg-aacaaaacttcaat--agaggaacagcatttaagaaggattgcctaaaggatggtcaaaacagcttttcctctgataatttaaaatctaaatcttatccccaggctaaagcagatgagcacagagc
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2641498 436 -   2996164 AACACTTTATTCAAATGCACCACtatttattgcaaacattctaggtgcctattgctc--t-------ttggcactgtggagaatat----caagtacatacagggtggtaattttgtccagaaagcacttgctgtct-cgtta---ag---aaaacactgattctcatgaaactatcagagaac------agtTTGCAAAGTAAGAA-----AACGCTCACAATG-TAA----------AGCGAAAAGAC-AAGGTGTTACTC---------------CCTG-----TCCCCAC---------------CCCT-------CAAAA-----------------------------------------------GGGGTTGTA-------TGGCCT--------TCCTTATACTCATTtta----tcaatgt----------------ggaaaacctcaaaactactgctcttca------at--tg-aacaaaacttcaatagagaggaacagcatttaagaaggattgcctaaaggatggtcaaaacagcttttcctctgataatttaaaatctaaatcttatccccaggctaaagcagatgagcacagagc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     393161 433 +    766320 AACACTTTATTCAaatgcaccactatttattgcaaacattctaggtgcctattgctc--t-------ttggcactgtggagaatat----caagtacatacagggtggtaattttgtccaaaaagcacttgctgtct-catta---ag---aaaacactgattctcatgaaactatcagagaac------agtTTGCAAAGTAAGAA-----AACGCTCACAATG-TAA----------AGCGAAAAGAC-AAGGTGTTACTC---------------CCTG-----TCCCCAC---------------CCCT-------CAAAA-----------------------------------------------GGGGTTGTA-------TGGCCT--------TCCTTATACTCATTtta----tcaatgt----------------ggaaaacctcaaaactactgctcttca------at--tg-aacaaaacttcaatagagagaaacagcattt---aaggattgcctaaaggatggtcaaaacagcttttcctctgataatttaaaatctaaatcttatccccaagctaaagcagatgagcacagagc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28850993 436 -  71996105 AACACTTTATTCAAATGCACCACTATTTATTGCAAACATTCTAGGTGCCTATTGCTC--T-------TTGGCACTGTGGAGAATAT----CAAGTACATACAGGGTGGTCATTTTGTCCAGAAAGCACTTACTGTCT-CATTA---AG---AAAACACTGATTCTCATGAAACTATCAGAGAAC------AGTTTGCAAAGTAAGAA-----AACACTCACAATG-TAA----------AGCGAAAAGAC-AAGGTGTTACTC---------------CCTG-----TCCCCAC---------------CCCT-------CAAAA-----------------------------------------------GGGGTTGTA-------TGGCCT--------TCCTTATACTCATTtta----tcaacgt----------------ggaaaacctcaaaactactgctcttca------at--tg-aacaaaacttcaatagagaggaacagcatttaagaaggattgcctaaaggatggtcaaaacaacttttcctctgataatttaaaatctaaatcttatccccaggctaaagcagatgagcacagagc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      14300 433 +    290775 AACACTTTATTCAAATGCACCACtatttattgcaaacattctaggtgcctattgctc--t-------ttggcactgtggagaatat----caagtacatacagggtggtaattttgtccaaaaagcacttgctgtct-catta---ag---aaaacactgattctcatgaaactatcagagaac------agtTTGCAAAGTAAGAA-----AACGCTCACAATG-TAA----------AGCGAAAAGAC-AAGGTGTTACTC---------------CCTG-----TCCCCAC---------------CCCT-------CAAAA-----------------------------------------------GGGGTTGTA-------TGGCCT--------TCCTTATACTCATTtta----tcaatgt----------------ggaaaacctcaaaactactgctcttca------at--tg-aacaaaacttcaatagagagaaacagcattt---aaggattgcctaaaggatggtcaaaacagcttttcctctgataatttaaaatctaaatcttatccccaggctaaagcagatgagcacagagc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2452209 436 -   3067355 AACACTTTATTCAAATGCaccactatttattgcaaacattctaggtgcctattgctc--t-------ttggcactgtggagaatat----caagtacatacagggtggtaattttgtccagaaagcacttgctgtct-catta---ag---aaaacactgattctcatgaaactatcagagaac------agtTTGCAAAGTAAGAA-----AACACTCACAACG-TAA----------AGCCAAAAGAC-AAGGTGTTACTC---------------CCTG-----TCCCCAC---------------CCCT-------CAAAA-----------------------------------------------GGGGTTGCA-------TGGCCT--------TCCTTATACTCATTTTA----TCAATGT----------------GGAAaacctcaaaactactgctcttca------at--tg-aacaaaacttcaatagagaggaacagcatttaagaaggattgcctaaaggatggtcaaaacagcttttcctcttataatttaaaatctaaatcttagccccaggctaaagcagatgagcacagagc
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2152567 435 -   2232465 AAcac-ttattcaaatttgccagcatttactgtgaactttccatgtgcccatcactctgt-------ttgacactggggtgattgt----caagtaaatacagggt-gtgatcttgcccaaacagcacttgctgtct-gattagagag---aaaacaCTGACCTCCGTGAAACTGTCAGAGAGT------AA--GGCAAAGTAAGGA-----TGCGCCTGAAAGGCTGA----------AATAAAGAGACAAAAATGTTACTC------------------------TCCCCAT----CTGTA------CCCA-------CAAGA-----------------------------------------------GGGACAGAA-------CGGCCT--------TCCCTGTATTCATTTTA----TCCATG-----------------ATTAaatctcagaactgctgttcttcag----tac--tt-accaaagcttcagctgagaggaccagcatttaggaagggttgccaaaaggaagggcaaaacagtttttcctctgataatcta------aaatactatccccagcctaaagcagaccaacagagagc
i otoGar3.GL873742         I 1 I 129
s mm10.chr17               57778207 475 -  94987271 GACACCC-------ATTCGCCATC--------------TTCTGTGCGCTTGTTGCTC--T-----GCTTGACACTGTGAAACCTG-------AGTCAACACGGGATGGCGATTTTGT-------GCCGTCTTTGTCT-GG-AG---AG---AAAATGCTAATACCCAAGAAAGTGTCATTAAACACTGTGAATCTGGGAAATATGAATCTCGAACCTTTACAGTg-ggataggggtgttggctcagtggt-aaagtactcccctagtaagcccaaggccctg-----gcctcaa---------------ttcc-------caaaactaaagaaaagaaTTACACATGGGTGGTTACTCTACCAGCACCCAGGAAGATGACA-------TGACCT--------CCCC------CATCTTA----CCAGTGA----------------TTAAAGCCTCAGTACCCTGGGTATCTC------AT--AGCAGTAGAACATCTACAGAGAGGAAGGACATCACAGAGGAGCTACCTGAAGGATTTGCAGCAT-GCTCCTCCTCTGATCATTGG------AATTCTTATAGCCAGAGTGAAGC--CTGACAGCAGAAC
i mm10.chr17               I 1 C 0
s canFam3.chr35            26180787 438 +  26524999 AGCACTTCATTCAGTCTGACAAGCACCTCCCAAAGGCCTCCC-CGTGCCCCTGGCTC--CACCTGGCTCTGCGCTGTGTGGGGTTTGTGCCTAGGATGTGCTGGGT-GTGGATCTGCCCAGAGG---CTTGCTGTGTGTGGGG---AG---CTAATGCTGATTCTCAGGACCCCACTGGAGAAC------AATGTG---AGTGTCCA-----CACCCTCACAGCC-TCC---------------------------------C---------------CTCA-----GCCCCACAGAGCATTAGGGTGGCCCT-------CTCCA-----------------------------------------------GGGGCTGTAAACAGTCTGGCC---------CCTTCATGTTCAACCCAGT-CCCAACATGTGCCTACACAACCcagcacaaccccaacactgccactcctct------gtgctt-atcaagatcctttctcagagggatgaccttcaggaagggatg----aatggtagtca-----gcctttatTCTGA--GTTGAGG---------CTGTCCACACAC-GGAGCAGAGCAGCA-GGAGC
i canFam3.chr35            I 1 C 0
s dasNov3.JH569098           228422 441 -    254539 AATATGCTATTCA-GTTTGCAAGCATTTGCTGGGGGACCACCACATTCCCA-AGCTC--T-----GCTTGTCACAGTGAAGAACCC----C-TGTCAATAGAGGGTGG---------------GGTGCTTCCCATCT-TGTTG---GGCCAATAATGCTGATTCCCATTAAGCTATCAAAGAAG------AA--TGCTAAGGAGGGA-----A---CACGGAATC-AGG----------GACGTGCAGAGTTAAGCGGCACTC---------------CCTGCGAGCTGCCTGC---------------TCCTTGATGTACAAGA-----------------------------------------------GAAATTCTT------CCAGCCCCAAACATGTTCCTATAGTCTCTgtattgatcagtga----------------ggaaaacctcaaaactccttctcctcagtacctac--ct-accagcacctcaacggagaggaagagtatttgggaggagttgcctaaaagattggccatgtggcat---ccttggtaattga------aaaccttgtccccacgttaaagtccacaagcagagagc
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     468907 23622 +    730504 I

a score=44715.000000
s hg38.chr6_GL000254v2_alt   708254 7 +   4827813 TACACAT
s panTro5.chr6             29681709 7 + 175400573 tacacat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29912452 7 + 173848474 TACACAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5722799 7 +   6154872 TACACAT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      15010 7 +     27237 tacacat
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2641934 7 -   2996164 tacacat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     393594 7 +    766320 tacacat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28851429 7 -  71996105 tacacat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      14733 7 +    290775 tacacat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2452645 7 -   3067355 tatacat
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2153131 7 -   2232465 TGCACAT
i otoGar3.GL873742         I 129 I 140
s mm10.chr17               57778682 7 -  94987271 TGAACAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26181225 7 +  26524999 AGCACAC
i canFam3.chr35            C 0 C 0
s dasNov3.JH569098           228863 7 -    254539 tgcacac
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     468907 23622 +    730504 I

a score=1045916.000000
s hg38.chr6_GL000254v2_alt   708261 218 +   4827813 TTAAAATGCTGAAATATTTCCACTTCCTACATATCTCCATCAA-CT------CAT-----CTTTCCTagaactggtcttg-ctaaagagtg-ttttggcattaagccattggtttacattgagaaagattacaagaagcaacattatgaaactcTCAGAGGGATCATTTTTCTCATATCTCAGTGATAGGAATCACTGTATTTTTCCTGTCA-TATAAGCAATAAC-ATTTCCT
s panTro5.chr6             29681716 219 + 175400573 ttaaaatgctgaaatatttccacttcctacaCATCTCCATCAATTT------CAT-----CTTTCCTagaactggtcttg-ctaaagagtg-ttttggcattaagccattggtttatgttgagaaagattacaagaagcaacattatgaaactcTCAGAGGGATCATTTTTCTCATATCTCAGTGATAGGAATCACTGTATTTTTCCTGTCA-TATAAGCAATAAC-ATTTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29912459 218 + 173848474 TTAAAATGCTGAAATATTTCCACTTCCTACACATCTCCATCAA-CT------CAT-----CTTTCCTagaactggtcttg-ctaaagagtg-ttttggcattaagccattggtttacgttgagaaagattacaagaagcaacattatgaaactcTCAGAGGGATCATTTTTCTCATATCTCAGTGATAGGAATCACTGTATTTTTCCTGTCA-TATAAGCAATAAC-ATTTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5722806 218 +   6154872 TTAAAATGCTGAAATATTTCCACTTCCTACACATCTCCATCAA-CT------CAT-----CTTTCCTagaactggtcttg-ctaaagagtg-ttttggcattaagccattggtttacgttgagaaagattacaagaagaaacattatgaaactcTCGGAGGGATCATTTTTCTCATATCTCAGTGATAGGAATCACTGTATTTTTCCTGTCA-TATAAGCAATAAC-TTTTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      15017 218 +     27237 ttaaaatgcttaaatatttccatctcctacgcatctccatcaa-ct------cat-----ctttcctagaactggtcttg-gtaaagagtg-ttttggcattaagccattggtttacattgagaaagattacaagaagcaacattatgaaactcTCGGAGGCATCATTTCTCTCATATCTCAGTGATAGGAATCACTGTACTTTTCCTATCA-TATAAGCAATAAC-TTTTCCT
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2641941 218 -   2996164 ttaaaatgcttaaatatttccatctcctacgcatctccatcaa-ct------cat-----ctttcctagaactggtcttg-gtaaagagtg-ttttggcattaagccattggtttacattgagaaagattacaagaagcaacattatgaaactcTCGGAGGCATCATTTCTCTCATATTTCAGTGATAGGAATCACTGTACTTTTCCTATCA-TATAAGCAATAAC-TTTTCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     393601 218 +    766320 ttaaaatgcttaaatatttccatctcctacgcatctccatcaa-ct------cat-----ctttcctagaactggtcttg-gtaaagagtg-ttttggcattaagccattggtttacattgagaaagattacaagaagcaacattatgaaactcTCGGAGGCATCATTTCTCTCATATCTCAGTGATAGGAATCACTGTACTTTTCCTATCA-TATAAGCAATAAC-ttttcct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28851436 218 -  71996105 ttaaaatgctgaaatatttccatctcctacgcatctccatcaa-ct------cat-----ctttcctagaactggtcttg-gtaaagagtg-ttttggcattaagccattgatttacattgagaaagattacaagaagcaacattatgaaactcTTGGAGGGATCATTTCTCTCATATCTCAGTGATAGGAATCGCTGTACTTTTCCTATCA-TATAAGCAATAAC-TTTTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      14740 218 +    290775 ttaaaatgcttaaatatttccatctcctacgcatctccatcaa-ct------cat-----ctttcctagaactggtcttg-gtaaagagtg-ttttggcattaagccattggtttacattgagaaagattacaagaagcaacattatgaaactcTCGGAGGCATCATTTCTCTCATATCTCAGTGATAGGAATCACTGTACTTTTCCTATCA-TATAAGCAATAAC-GTTTCCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2452652 218 -   3067355 ttaaaatgctgaaatatttccatctcctacgcatctccatcaa-ct------cat-----ctttcctagaactggtcttg-gtaaagagtg-ttttggcattaagccattggtttacattgagaaagattacaagaagcaacattatgaaactcTCAAAGGGATCATTTCTCTCATATCTCAGTGATAGGAATCACTGTACTTTTCCTATCA-TATAAGCAATaac-gtttcct
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2153278 213 -   2232465 TTAAAATATTTAAAAGTTTCCACTTCCTAC----TTCTACTGG-CT------CAT-----CCTTTATAGAACT-GTCTTG-TTAAAGGGTGTTtttagcatcctgccattggattacactaaggaagattacaagaagcaacactatgaagctc--AAAGGGAAAGTTTCTTTCACATATCAGTGACA-GAATCATTGTGCTTTTCCTGTCACCATAAGCAATAACTTTTTTCT
i otoGar3.GL873742         I 140 C 0
s mm10.chr17               57778689 199 -  94987271 TGAAAATGC---AACATATCCACCTCCTGGTCCCCTCCATCTA-CA------CGT-----CCTTCAGAGGCCT-CTCTAG-CTAACTGGTG-CTTTGGCATTTTGCCATTGGTTTCCCTTGGACATG------------AGCTTTATGAAACTCACA---GCAAAACTTACCCCTCATCTCCATGATAGGCACAGTAGTACTCTTCTGGTCT-TATCGGAAATGTC-TTCtttt
i mm10.chr17               C 0 I 3619
s canFam3.chr35            26181232 189 +  26524999 --------CTCACATGTGCTC------------TTTCCACCCA-CC------CATGACACCCTCCACAGAGCC---CTCGAGTGAGTGGTG-CTCCAGCGCTCTGCCACCGCTTTACAAGAGGGATGCCCCCTAGAAACAACATCATGAAACTCTCA---GGAAACTGTTCATCACATCTCAGTGATGGGGA-CACTGTCCTT---CTGTCA-CGTGAAC-----T-CTTTCCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH569098           228870 167 -    254539 gtacaaggc---attatttgcctccTCGTCCTGCCTCCATTTA-CCCCACAGCAT-----CCTTCTCAGAACTGCTCAGG-CCACATGGCA-CCCTGGCATTCTGCCAACTG-------------AGGTGACAACAAGCAACAACAGAA------------------TTCTCTCACATCCGAGAGACA-Gagtaactgtacctttcctgt------------------------
i dasNov3.JH569098         C 0 C 0
e proCoq1.NW_012152574v1     468907 23622 +    730504 I

a score=286847.000000
s hg38.chr6_GL000254v2_alt   708479 67 +   4827813 CAcagttttatggaagtacaattggcatatgacaaattgtacatgtttaagtgtgcaatttgataag
s panTro5.chr6             29681935 67 + 175400573 CAcggttttatggaagtacaattggcatatgacaaattgtacatgtttaagtgtgcaatttgataag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29912677 67 + 173848474 CAcagttttatggaagtacaattggcatatgacaaattgtacatgtttaagtgtgcaatttgataag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5723024 67 +   6154872 CAcagttttatggaagtacaattggcatatgagaaattgtacatgtttaagtgtgcaatttgataag
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      15235 67 +     27237 TAcagttttatggaagtacaattggcatatgacaaattgtacatgttcaagtgtgcaatttgataag
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2642159 67 -   2996164 TAcagttttatggaagtacaattggcatatgacaaattgtacatgttcaaatgtgcaatttgataag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     393819 67 +    766320 tacaattttatggaagtacaattggcatatgacaaattgtacatgtttaagtgtgcaatttgataag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28851654 67 -  71996105 TAcaattttatggaagtacaattggcatatgacaaattgtacatgtttaagtgtgcaatttgataag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      14958 67 +    290775 TAcaattttatggaagtacaattggcatatgacaaattgtacatgttcaagtgtgcaatttgataag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2452870 67 -   3067355 tacagttttatggaagtacaattggcatatgacaaattgtacacgtttaagtgtgcaatttgataag
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2153491 61 -   2232465 CACAAtttcctggaggtaaaat----at-taataaatagcatatatgtaagtgtacaa-tgggcaag
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35            26181421 59 +  26524999 GAcagcttaatgaggatacgattgacat-----aacttgcatatgtttcagcatac---ctgctaaa
i canFam3.chr35            C 0 C 0
s dasNov3.JH569098           229037 16 -    254539 ------------------------------------------atgt---------catttggataat
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57778888 3619 -  94987271 I
e proCoq1.NW_012152574v1     468907 23622 +    730504 I

a score=704911.000000
s hg38.chr6_GL000254v2_alt   708546 162 +   4827813 ttttgacccatgtatgcacc-atgacattataggcgcaatcacgaaatgaacatatccagccc--c--cgtgctccctcacactccattgtaatctctctctttcacccctccctgcactcctcattcccaagcaacctctgatctgcttcccagcactat-----attttt
s panTro5.chr6             29682002 162 + 175400573 ttttgacccatgtatgcacc-atgacattataggcgcaatcacgaaatgaacatatccagccc--c--catgctccctcacactccattgtaatctctctctttcacccctccctgcactcctcattcccaagcaacctctgatctgcttcccagcactat-----attttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29912744 162 + 173848474 ttttgacccatgtatgcacc-atgacattataggcgcaatcacgaaatgaacatatccagccc--c--aatgctccctcacactccattgtaatctctctctttcacccctccctgcactcctcattcccaagcaacctctgatctgcttcccagcactat-----attttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5723091 162 +   6154872 ttttgacccatgtatgcacc-atgacattataggcgtaatcacgaaatgaacatatccagccc--c--catgctccctcacactccattgtaatctctctctttcacccctccctgcactcctcattcccaagcaacctctgatctgcttcccagcactat-----attttt
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      15302 162 +     27237 ttttgacctatgtatgtacc-atgacattacaggcacaatcacgaaattaacatatccatccc--c--cttgctccctcactccccattgtaatctctctcttttacccctccctaaactcctcattcccaagcaacctctgatctacttcctagcactat-----attttt
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2642226 162 -   2996164 ttttgacctatgtatgtacc-atgacattacaggcacaatcacgaaattaacatatccatccc--c--cttgctccctcactccccattgtaatctctctcttttacccctccctaaactcctcattcccaagcaacctctgatctacttcctagcactat-----attttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     393886 162 +    766320 ctttgacctatgtatgtacc-atgacattacaggcacaatcacgaaattaacatatccatccc--c--cttgctccctcactccccattgtaatctctctcttttacccctccctaaactcctcattcccaagcaacctctgatctacttcccagcactat-----attttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28851721 162 -  71996105 ttttgacctatgtatgtacc-atgacattacaggcacaatcacgaaattaacatatccatccc--c--cttgctccctcactctccattgtaatctctctcttttacccctccctaaactcctcattcccaagcaacctctgatctgcttcccagcactat-----attttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      15025 162 +    290775 ctttgacctatgtatgtacc-atgacattacaggcacaatcacgaaattagcatatccatccc--c--cttgctccctcactccccattgtaatctctctcttttacccctccctaaactcctcattaccaagcaacctctgatctacttcccagcactat-----attttt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2452937 162 -   3067355 ttttgacctatgtatgtacc-atgacattacagacacaatcacgaaattaacatatccatccc--c--cttgctccctcactccccattgtaatctctctcttttacccctccctaaactcctcgttcccaagcaacctctgatctgcttcccagcactat-----attttt
i colAng1.NW_012115566v1   C 0 I 7542
s otoGar3.GL873742          2153552 160 -   2232465 tttggacatactcttacaat-gtgaaactattagcacgatcatgaaatgaacatgtccacctc--cgaaaagtctcctcatgtcccgttataatttctcccttccacctcttcctccattcttcatt---------cctctgatctgccttctatcactactgatgagtttg
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35            26181480 168 +  26524999 tttggacacacgtacatacctgcaaaaccaccaccacagtcatgctatgaatgtttctgagccatc--aaaccgtccttgtgccccaatgc-atctctcctgcccacccctcctcacattccccatttcacag-aacctatggtcacatttctgggacgatcaatgagttgg
i canFam3.chr35            C 0 C 0
e mm10.chr17               57778888 3619 -  94987271 I
e dasNov3.JH569098           229053   0 -    254539 C
e proCoq1.NW_012152574v1     468907 23622 +    730504 I

a score=305315.000000
s hg38.chr6_GL000254v2_alt   708708 61 +   4827813 cttttttcagagttttatataaatgaaattataaaatatgtactctttttagtctgactt------------a----
s panTro5.chr6             29682164 61 + 175400573 cttttttcagagttttatataaatgaaattataaaatatgtactctttttagtctgactt------------a----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29912906 61 + 173848474 cttttttcagagttttatataaatgaaattataaaatatgtactctttttagtctgactt------------a----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5723253 61 +   6154872 cttttttcagagttttatataaaagaaattataaaatatgtactctttttagtctgactt------------a----
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      15464 73 +     27237 cttttttcagagttttatataaatggaattataaaacatgtactctttttagtctgacttctttcattcagca----
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2642388 73 -   2996164 cttttttcagagttttatataaatggaattataaaacatgtactctttttagtctgacttctttcattcagca----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     394048 73 +    766320 cttttttcagagttttatataaacggaattataaaacatgtactctttttagtctgacttctttcattcagca----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28851883 73 -  71996105 cttttttcagagttttatataaatggaattataaaacatgtactctttttagtctgacttctttcattcagca----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      15187 73 +    290775 cttttttcagagttttatataaatggaattataaaacatgtactctttttagtctgacttctttcatttagca----
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2460641 73 -   3067355 cttttttcagagttttatataaatggaattataaaacatgtactctttttagtctgacttatttcatttagca----
i colAng1.NW_012115566v1   I 7542 C 0
s otoGar3.GL873742          2153712 77 -   2232465 gttttcctagaattttatataacggaaatcataaaatatgtactttctttagtctgaattctttcattcagcataat
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35            26181648 77 +  26524999 tctttcttagagttttctataagtggaaacacaaattatgcagccttttgggactggcttcctcagttcagcataat
i canFam3.chr35            C 0 C 0
e mm10.chr17               57778888 3619 -  94987271 I
e dasNov3.JH569098           229053  0 -    254539 C
e proCoq1.NW_012152574v1     468907 23622 +    730504 I

a score=2698650.000000
s hg38.chr6_GL000254v2_alt   708769 558 +   4827813 tatttggagatttggccatgttgtggtgtgta-cagcagcc-attccttttcatttctgagtgatactccattgtatagatatgacataatttgttcatccattcacctgctg------------------------------------------------aaggaaatttgggttgttttcacaattt-tttattcattcacctgctaaaggaagttcaggttgtttccagtttttggttcatagaatgaaggttctatgaacatttgtgtacaaagtctttgtatgctt-tcatttctctggggtaaatacatagatgtgaaatggctgcatcacatgggaagtgtatgtttaattttttaagaaattaagtaatcac-tttt-c-ctcttaacatgacagctagcaagtttccacctgaatttgtaactcatctccaggaaatgtgcaattcctcacg--atata-ttttTGAGAT----ATCTAGTTTCTGGTCTCACttgc---tgttgttgttgttgttCTATTCTACCTTTTTCTTTGTCCAGTCTCTCTCATCCTTATTTTCTGTACATTTATGTAACCCAGCACATTAGTCTTTCTGGAGCAAGACTTAGAGCC
s panTro5.chr6             29682225 559 + 175400573 tatttggagatttggccatgttgtggtgtgta-cagcagcc-attccttttcatttctgagtgatactccattgtatagatacgacataatttgttcatccattcacctgctg------------------------------------------------aaggaaatttgggttgttttcacaatttgtttattcattcacctgctaaaggaagttcaggttgtttccagtttttggttcatagattgaaggttctatgaacatttgtgtacaaagtctttgtatgctt-tcatttctctggggtaaatacatagatgtgaaatggctgcatcacatgggaagtgtatgtttaattttttaagaaattAAGTAATCAC-TTTT-C-CTCTTAACATGACAGCTAGCAAGTTTCCACCTGAATTTGTAACTCATCTCCAGGAAATGTGCAATTCCTCACA--ATATA-TTTTTGAGAT----ATCTAGTTTCTGGTCTCACttgc---tgttgttgttgttgttCTATTCTACCTTTTTCTTTGTCCAGTCTCTCTCATCCTTATTTTCTGTACATTTATGTAACCCAGCACATTAGTCTTTCTGGAGCAAGACTTAGAGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29912967 556 + 173848474 tatttggagatttggccatgttgtggtgtgta-cagcagcc-attccttttcatttctgagtgatactccattgtatagatacgacataatttgttcatccattcacctgctg------------------------------------------------aaggaaatttgggttgttttcacaatttgtttattcattcacctgctaaaggaagttcaggttgtttccagtttttggttcatagattgaaggttctatgaacatttgtgtacaaagtctttgtatgctt-tcatttctctggggtaaatacatagatgtgaaatggctgcatcacatgggaagtgtatgtttaattttttaagaaattAAGTAATCAC-TTTT-C-CTCTTAACATGACAGTTAGCAAGTTTCCACCTGAATTTGTAACTCATCTTCAGGAAATGTGCAATTCCTCACA--ATATA-TTTTTGAGAT----ATCTAGTTTCTGGTCTCACTTGC------TGTTGTTGTTGTTCTATTCTACCTTTTTCTTTGTCCAGTCTCTCTCATCCTTATTTTCTGTACATTTATGTAACCCAGCACATTAGTCTTTCTGGAGCAAGACTTAGAGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5723314 562 +   6154872 tatttggagatttggccatgttgtggtgtgta-cagcagtc-attccttttcatttctgagtgatactccattgtatagatatgacataatttgttcatccattcacctgctg------------------------------------------------aaggaaatttgggttgttttcacaatttgtttattcattcacctgctaaaggaagttcaggttgtttccagtttttggttcatagaatgaaggttccatgaacttttgtgtacaaagtctttgtatgctt-tcatttctctggggtaaatacatagatgtgaaatggctgcatcacatgggaagtgtatgtttaattttttaagaaattaagtaatcac-tttt-c-ctcttaacatgacagctagcaagtttccacctgaatttgtaactcatctccaggaaatgtgcaattcctcaca--atata-ttttTGAGAT----ATCTAGTTTCTGGTCTCACCtgctgttgttgttgttgttgttCTATTCTACCTTTTTCTTTGTCCAGTCTCTCTCATCCTTATTTTCTGCACATTTATGTAACCCAGCACATTAGTCTTTCTGGAGCAAGACTTAGAGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      15537 558 +     27237 tatttggagattcggccatgtcatggtgtgta-caacagcc-attctttttcatttctgagtgagactccattgtatggatatgacataatttgttaatccgttcacctgctg------------------------------------------------aaggaaattagggttgttttcacaatttgtttattcattcacctgctaaaggaagtttgggttgtttccagtttttggttcatagaatgaagattctatgaacatttgtgcacaaagtctttgtatgctt-tcatttctctggggtaaatacatagacgtgaaatggctgcatcgtatggaaagtgtaagtttaattttttaagaaattAAATAATCAC-TTTT-C-CTCTTAATATGACAGCTAACAAGTTTCCACCTGAATTTGTAATTCATCTCCAGGAAATGTGCAATTCCTCAC---ATATG-TTTTTGAGGT----ATCTAGTTTCTGGCCTCACCTGC---TGCTGTTGTTGTTTTTCTATTCTACCTTTTTCTTTGTCCAGTCTCCCTGATCCTTATTTTCGGCACGTTTATGTAAGCCAGCATATTAGTCTTTCTGGAGCAAGACTTAGAGCC
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2642461 558 -   2996164 tatttggagattcggccatgtcatggtgtgta-caacagcc-attctttttcatttctgagtgagactccattgtatggatatgacataatttgttaatccgttcacctgctg------------------------------------------------aaggaaattagggttgttttcacaatttgtttattcattcacctgctaaaggaagtttgggttgtttccagtttttggttcatagaatgaagattctatgaacatttgtgcacaaagtctttgtatgctt-tcatttctctggggtaaatacatagacgtgaaatggctgcatcgtatggaaagtgtaagtttaattttttaagaaattAAATAATCAC-TTTT-C-CTCTTAATATGACAGCTAACAAGTTTCCACCTGAATTTGTAATTCATCTCCAGGAAATGTGCAATTCCTCAC---ATTTG-TTTTTGAGGT----ATCTAGTTTCTGGCCTCACCTGC---TGTTGTTGTTGTTTTTCTATTCTACCTTTTTCTTTGTCCAGTCTCCCTGATCCTTATTTTCTGCACATTTATGTAAGCCAGCATATTAGTCTTTCTGGAGCAAGACTTAGAGCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     394121 562 +    766320 tatttggagattcggccatgtcatggtgtgta-caacagcc-attctttttcatttctgagtgagactccattgtatggatatgacataatttgttaatccgttcacctgctg------------------------------------------------aaggaaattagggttgttttcacaatttgtttattcattcacctgctaaaggaagtttgggttgtttccagtttttggtgcatagaataaagattctatgaacatttgtgtacaaagtctttgtatgctt-tcatttctctggggtaaatacatagacgtgaaatggctgcatcgtatggagagtgtaagtttaattttttaagaaattAAATAATCAC-TTTT-C-CTCTTAATATGACAGCTAACAAGTTTCCACCTGAATTTGTAATTCATCTCCAGGAAATGTGCAATTCCTCACA--ATATG-TTTTTGAGAT----ATCTAGTTTCTGGCCTCACCtgctgttgttgttgttgtttttCTATTCTACCTTGTTCTTTGTCCAGTCTCCCTGATCCTTATTTTCTGCACATTTATGTAAGCCAGCATATTAGTCTTTCTGGAGCAAGACTTAGAGCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28851956 550 -  71996105 tatttggagattcggccatgttgtggtgtgta-caacagcc-attctttttcatttctgagtgagactccattgtatggatatgacataatttgttaatccattcacctgctg------------------------------------------------aaggaaattagggttgttttcacaatttgtttattcattcacctgctaaaggaagtttgggttgtttccagtttttggttcatagaatgaagattctatgaacatttgtgtacaaagtctttgtatgctt-tcatttctctggggtaaatacatagacgtgaaatggctgc---------aaagtgtaagtttaattttttaagaaattAAATAATCAC-TTTT-C-CTCTTAACATGACAGCTAACAAGTTTCCACCTGAATTTGTAATTCATCTCCAGGAAATGTGCAATTCCTCACA--ATATG-TTTTTGAGAT----ATCTAGTTTCTGGCCTCACCTGC---TGTTGTTGTTGTTTTTCTATTCTACCTTTTTCTTTGTCCAGTCTCCCTGATCCTTATTTTCTGCACATTTATGTAAGCCAGCATATTAGTCTTTCTGGAGCAAGACTTAGAGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      15260 562 +    290775 tatttggagattcggccatgtcatggtgtgta-caacagcc-attctttttcatttctgagtgagactccattgtatggatatgacataatttgttaatccgttcacctgctg------------------------------------------------aaggaaattagggttgttttcacaatttgtttattcattcacctgctaaaggaagtttgggttgtttccagtttttggttcatagaataaagattctatgaacatttgtgtacaaagtctttgtatgctt-tcatttctctggggtaaatacatagacgtgaaatggctgcatcgtatggaaagtgtaagtttaattttttaagaaattAAATAATCAC-TTTT-C-CTCTTAATATGACAGCTAACAAGTTTCCACCTGAATTTGTAATTCATCTCCAGGAAATGTGCAATTCCTCACA--ATATG-TTTTTGAGAT----ATCTAGTTTCTGGCCTCACCtgctgttgttgttgttgtttttCTATTCTACCTTGTTCTTTGTCCAGTCTCCCTGATCCTTATTTTCTGCACATTCATGTAAGCCAGCATATTAGTCTTTCTGGAGCAAGACTTAGAGCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2460714 601 -   3067355 tatttggagattcggccatgttgtggtgtgta-caacagcc-attctttttcatttctgagtgagactccattgtatggatatgacataatttgttaatccgttcacctgctgaaggaaattagggttgctttcacaatttgtttattctttcacctgctaaaggaaattagggttgctttcacaatttgtttattctttcacctgctaaaggaagtttgggttgtttccagtttttggttcatagaatgaagattctatgaacatttgtgtacaaagtctttgtatgctt-tcatttctctggggtaaatacatagatgtgaaatggctgcatcatatggaaagtgtaagtttaattttttgagaaattAAATAATCAC-TTTT-C-CTCTTAACATGACAGTTAACAAGTTTCCACCTGAATTTGTAATTCATCTCCAGGAAATGTGCAATTCCTCACA--ATATG-TTTTTGAGAT----ATCTAGTTTCTGGCCTCACCTGC------TGTTGTTGTTTTTCTATTCTACCTTTTTCTTTGTCCAGTCTCCCTGATCCTTACTT---GCACATTTATGTAAGCCAGCATATTAGTCTTTCTGGAGCAAGACTTAGAGCC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2153789 492 -   2232465 tactttgagattcgtccatgttgtggtgtgtg-taacagttggttctttttaatttctgagtcatactccattatatgaacataccacaatttgtttatctattcctctgctg------------------------------------------------atgcaaatttgtgttgtttcc------cgttta-------------------------gagttgttac----------------aaataaaacttctatgagcatttatgtac-aattctctgtatgctt-tcatttctcttgagtaaatacataggtgtaaaagggctacatcatacag---gtgtatgtttaatttttaaagaca-----tattcacttttt-c-cTCTTTGCATGACAACTCATAAATTTACACCTGAATTTGTAACGCATTTCTAGAAACTATGCCACTCCTCTCAGTATATA-CTTTTGAAAT----GCTTAGTTTCTGGCTTTACCTTA-------------TTTTTTCTATTTTACGTTTTTCTTTGTCCAGTCTCTCTCATCCTTATTTTCTGCATATTTGTACAAG---GCACCTTAA--AGTCTGACACAAGGCTTAGAGCC
i otoGar3.GL873742         C 0 C 0
s canFam3.chr35            26181725 472 +  26524999 tattttgagatgcatccatgtc---gtgtgtatcaacagct------cactccttgctgagtggtattccattgtgcagatatatcaccatttgcttatctgttaatcgattg------------------------------------------------atggaaattggggttatttcc-------------------------------agtttcgggttattac----------------aaataaagctgctctgaaagtctgcatgcacag-ctttgtattctcgccccctctcttgggtaaatgtctgggtatggaatggcaggatcatggagaaggtacacatttaactttt-aataaattaagaaatcac-ttttcc-ctctttatatgacaactagtaa--------ccagagttgtgacccatttctgggaaatgtacatctcctcaca--gtttg-cttttgaaatgctcacctggcttctgacatcacctCC---------------------ATCCCA---------TCACTCACTCTACCTTGGCCTCATTTTGTGCATA-TCATGTAAGGCA-CATGACAGTGTTTCTGGAATGAGGCCCAAAGCC
i canFam3.chr35            C 0 I 60
s dasNov3.JH569098           229053 482 -    254539 tatcttgcgatccatctgtgctgttgtgtatc-aaaagctc-actcctttttat---tgagtggtattcctttatatggatataacaaaattggttattccattcacctattg------------------------------------------------atggacatttgggatatttt--------------------------------------------------ggttttggttataaaagcaaacctgcagtgaacatttgtgtac-----------atattt-tcatttctctggggtcaatatctcagggtagaat-tctggatcacagagaaggtatgtg-ttaactttcaaagaaagttttcagtcac-tttt-ctctctttgcatgacagctagtaagcttactgccaaatctgtaactcgtttccagaaaac------ttcctcaca--gtatactttttggaatactcacccagtttctggattcaccttc-------------tttttcctattctactttgctcgttgttctgcacctcttatccttcttttcttcatattgatgttagata-catttaagtctttctggagcaaggcTCAGAGCC
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57778888 3619 -  94987271 I
e proCoq1.NW_012152574v1     468907 23622 +    730504 I

a score=234484.000000
s hg38.chr6_GL000254v2_alt   709327 61 +   4827813 ACCAATCAGTAATTAAAAAAAAAAAAATAGACAGGGGAAAGTATTGAATGGAAAATCCCTG
s panTro5.chr6             29682784 59 + 175400573 ACCAATCAGTAAT--AAAAAAAAAAAATAGACAGGGGAAAGTATTGAATGGAAAATCCCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29913523 59 + 173848474 ACCAATCAGTAAT--AAAAAAAAAAAATAGACAGGGGAAAGTATTGAATGGAAAATCCCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5723876 59 +   6154872 ATCAATCAGTAAT--AAAAAAAAAAAATAGACAGGGGAAAGTATTGAATGGAAAATCCCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      16095 58 +     27237 ATCAATCAGTAAG---AAAAAAAAAAATAGGCAGGGGAAAGTATCAAATGAAAAATCCCTG
i macFas5.chrUn_KE146120   C 0 M 1000
s macNem1.NW_012011356v1    2643019 58 -   2996164 ATCAATCAGTAAG---AAAAAAAAAAATAGGCAGGGGAAAGTATCAAATGAAAAATCCCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     394683 61 +    766320 ATCAATCAGTAAGAAAAAAAAAAAAAATAGGCAGGGGAAAGTATCAAATGAAAAATCCCTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28852506 59 -  71996105 ATCAATCAATAAG--AAAAAAAAAAAATAGGCAGGGGAAAGTATCGAATGAAAAATCCCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      15822 58 +    290775 ATCAATCAGTAAG---AAAAAAACAAATAGGCAGGAGAAAGTATCAAATGAAAAATCCCTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2461315 57 -   3067355 ATCAATCAGTATG----AAAAAAAAAATAGGCAGGGGAAAGTATTGAATGAAAAATCCCTG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2154281 50 -   2232465 ATCAGCAGGTAAA-----------AAATCAGTAAGGGGAATTATGGAATGGAAAAGCTCTG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           229535 51 -    254539 ----ATCAGCATG----CAAAAAAAAATA--CAAGGagaattaccaaatgggaagggcctg
i dasNov3.JH569098         C 0 I 15748
e mm10.chr17               57778888 3619 -  94987271 I
e proCoq1.NW_012152574v1     468907 23622 +    730504 I
e canFam3.chr35            26182197 60 +  26524999 I

a score=6531.000000
s hg38.chr6_GL000254v2_alt   709388 4 +   4827813 -GTTa
s panTro5.chr6             29682843 4 + 175400573 -GTTa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29913582 4 + 173848474 -GTTa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5723935 4 +   6154872 -Atga
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1    2643077 4 -   2996164 -Gtga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     394744 4 +    766320 -Gtga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28852565 4 -  71996105 -Gtga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      15880 4 +    290775 -Gtga
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2461372 4 -   3067355 -Gtga
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2154331 4 -   2232465 GGTG-
i otoGar3.GL873742         C 0 I 401
e mm10.chr17               57778888 3619 -  94987271 I
e dasNov3.JH569098           229586 15748 -    254539 I
e proCoq1.NW_012152574v1     468907 23622 +    730504 I
e canFam3.chr35            26182197 60 +  26524999 I
e macFas5.chrUn_KE146120      16153 1000 +     27237 M

a score=872603.000000
s hg38.chr6_GL000254v2_alt   709392 273 +   4827813 tatggtttggctctatgtccccacccaaatctcatcttgtagctcccataattcccatgtgttgtgggagggacctggtgagagatgattgaattatgggggtggatgtttcctgtgctgttcttgtgatagtgaatgggtctcacatgatctgatggttttagaaatgggagctgccctacacaagctctcatttttcctgctactatccatgtaagatgtgatttgctcctccttgccttccaccatgattgtgaggcctccccagtcatg
s panTro5.chr6             29682847 271 + 175400573 tatggtttggctctatgtccccacccaaatctcatcttgtagctcccataattcccatgtgttgtgggagggacctggtgagagttgattgaattatgggggtggatgtttcctgtg-tggtcttgtgatagtgaatgggtctcacatgatctgatggttttagaaatgggagctgccctacacaagctctcatttttcctgctactatccatgtaagatgtgatttgctcc-ccttgccttccaccatgattgtgaggcctccccagccatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29913586 272 + 173848474 tatggtttggctctatgtccccacccaaatctcatcttgtagctcccataattcccatgtgttgtgggagggacctggtgagagttgattgaattatgggggtggatgtttcctgtg-tggtcttgtgatagtgaatgggtctcacatgatctgatggttttagaaatgggagctgccctacacaagctctcatttttcctgctactatccatgtaagatgtgatttgctcctccttgccttccaccatgattgtgaggcctccccagccatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5723939 273 +   6154872 tatggtttggctctatgtccccacccaaatctcatcttgtagctcccataattcccatgtgttgtgggagggacctggtgagagatgattgaattatgggggtgggtgtttcctgtgctgttcttgtgatagtgaatgggtctcacatgatctgatggttttagaaatgggagctgccctacacaagctctcatttttcctgctactatccatgtaagatgtgacttgctcctccttgccttccaccatgattgtgaggcctccccagccatt
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1    2643081 273 -   2996164 tatggtttggctctatgtccccacccaaatctcatcttgtagctcccataattctcatgtgttatgggagggacctggtgagagatgattgaattatgggagtgggtgtttcctgtgctgttcttgcgatagtgaatggatctcacatgatctgatggttttagaaacgggagttgccctacacaagctctcatttttcctgctaccatccatgtaagatgtgacttgctcctccttgccttccaccatgattgtgaggcctccccaaccata
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     394748 273 +    766320 tatggtttggctctatgtccccacccaaatctcatcttgtagctcccataattctcatgtgttatgggagggacctggtgagagatgattgaattatgggagtgggtgtttcctgtgctgttcttgcgataatgaatgggtctcacgtgatctgatggttttagaaacgggagttgccctacacaagctctcatttttcctgctaccatccatgtaagatgtgacttgctcctccttgccttccaccatgattgtgaggcctccccaaccata
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28852569 273 -  71996105 tacggtttggttccatgtccccacccaaatctcatcttgtagctcccataattctcatgtgttatgggagggacttggtgagagatgattgaattatgggagtgggtgtttcctgtgctgttcttacaatagtgaatgggtctcacatgatctgatggttttagaaacgggagttgccctacacaagctctcatttttcctgctaccatccatgtaagatgtgatttgctcctccttgccttccaccatgattgtgaggcctccccaaccata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      15884 273 +    290775 tatggtttggctctatgtccccacccaaatctcatcttgtagctcccataattctcatgtgttatgggagggacctggtgagagatgattgaattatgggagtgggtgtttcctgtgctgttcttacgataatgaatgggtctcacatgatctgatggttttagaaacgggagttgccctacacaagctctcatttttcctgctaccatccatgtaagatgtgacttgctcctccttgccttccaccatgattgtgaggcctccccaaccata
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2461376 273 -   3067355 tatggtttggctgtatgtccccacccaaatctcatcttgtagctcccataattctcatgtattatgggagggacctggtgagagatgattgaattatgggagtgggtgtttcctgtgctgttcttgcactagtgaatgggtctcacatgatctgatggttttagaaatgggagttgccctacacaagctctcatttttcctgctaccatccatgtaagatgtgacttgctcctccttgccttccaccatgattgtgaggcctccccaaccata
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57778888 3619 -  94987271 I
e dasNov3.JH569098           229586 15748 -    254539 I
e proCoq1.NW_012152574v1     468907 23622 +    730504 I
e canFam3.chr35            26182197  60 +  26524999 I
e otoGar3.GL873742          2154335 401 -   2232465 I
e macFas5.chrUn_KE146120      16153 1000 +     27237 M

a score=404249.000000
s hg38.chr6_GL000254v2_alt   709665 100 +   4827813 tggaactgtaagtccaataaacctctttgttttgtaaattgcccagccttgggtaagtctttatcagcagtgtgaaaacagactaatacaCCTTGGTAAA
s panTro5.chr6             29683118 100 + 175400573 tggaactgtaagtccaataaacctctttgttttgtaaattgcccagccttgggtaagtctttatcagcagtgtgaaaacagactaatataCCTTGGTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29913858 100 + 173848474 tggaactgtaagtccaataaacctctttgttttgtaaattgcccagccttgggtaagtctttatcagcagtgtgaaaacagactaatataCCTTGGTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5724212 100 +   6154872 tggaactgtaagtccaataaacctctttgttttgtaaattgcccagccttgggtaagtctttatcagcagtgtgaaaacagactaatataCCTTGGTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      17154 100 +     27237 tggaactgtaagtccaataaacttctttgttttgtaaattgcccagcctcgggtaagtctttatcagcagcatgaaaacagactaatataCctgggtaaa
i macFas5.chrUn_KE146120   M 1000 C 0
s macNem1.NW_012011356v1    2643354 100 -   2996164 tggaactgtaagtccaataaacttctttgttttgtaaattgcccagcctcgggtaagtctttatcagcagcatgaaaacagactaatataCctgggtaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     395021 100 +    766320 tggaactgtaagtccaataaacttctttgttttgtaaattgcccagcctcgggtaagtctttatcagcagcgtgaaaacagactaatataCctgggtaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28852842 100 -  71996105 tggaactgtaagtccaataaacttcttagttttgtaaattgcccagcctcgggtaagtctttatcagcagcgtgaaaacagactaatataCctgggtaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      16157 100 +    290775 tggaactgtaagtccaataaacttctttgttttgtaaattgcccagcctcgggtaagtctttatcagcagcgtgaaaacagactaatataCctgggtaaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2461649 100 -   3067355 tggaactgtaagtccaataaacttctttgttttgtaaattgcccagcctggggtaagtctttatcagcagcgtgaaaacagactaatataCctgggtaaa
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57778888 3619 -  94987271 I
e dasNov3.JH569098           229586 15748 -    254539 I
e proCoq1.NW_012152574v1     468907 23622 +    730504 I
e canFam3.chr35            26182197  60 +  26524999 I
e otoGar3.GL873742          2154335 401 -   2232465 I

a score=54623.000000
s hg38.chr6_GL000254v2_alt   709765 12 +   4827813 GATTgaagacat
s panTro5.chr6             29683218 12 + 175400573 GATTgaagacat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29913958 12 + 173848474 GATTgaagacat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5724312 12 +   6154872 GATTGAAGACAT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      17254 12 +     27237 gactgaagacat
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2643454 12 -   2996164 gactgaagacat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     395121 12 +    766320 gactgaagacat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28852942 12 -  71996105 gactgaagacat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      16257 12 +    290775 gactgaagacat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2461749 12 -   3067355 gactgaagacat
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57782507 12 -  94987271 GACTGAAGCCTT
i mm10.chr17               I 3619 C 0
e dasNov3.JH569098           229586 15748 -    254539 I
e proCoq1.NW_012152574v1     468907 23622 +    730504 I
e canFam3.chr35            26182197 60 +  26524999 I
e otoGar3.GL873742          2154335 401 -   2232465 I

a score=350748.000000
s hg38.chr6_GL000254v2_alt   709777 87 +   4827813 gggttgtga--tctcta----ctccgttactaaaactttacaggacctagagcaaactctttgcatcatctttttggttttcaatttcatcat---
s panTro5.chr6             29683230 89 + 175400573 gggttgtgatctctcta----ctccattactaaaactttacatgacctagagcaaactctttgcatcatctttttggttttcaatttcatcat---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29913970 87 + 173848474 gggttgtga--tctcta----ctccattactaaaactttacatgacctagagcaaactctttgcatcatctttttggttttcaatttcatcat---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5724324 87 +   6154872 GGGTTGTGA--TCTCTA----CTCCGTTACTAAAACTTTACATGACCTATAGCAAACTCTTTGCATCATCTTTTTGGTTTTCAATTTCATCAT---
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      17266 87 +     27237 gggttatga--tctcta----ctctgttactaaaacttcacatgacctagagcaaactctttgcatcatcttcttgattttcagtttcatcat---
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2643466 87 -   2996164 gggttatga--tctcta----ctctgttactaaaacttcacatgacctagagcaaactctttgcatcatcttcttgattttcagtttcatcat---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     395133 87 +    766320 gggttatga--tctcta----ctctgttactaaaacttcacatgacctagagcaaactctttgcatcatcttcttgattttcagtttcatcat---
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28852954 87 -  71996105 aggttatga--tctcta----ctctgttactaaaacttcacatgacctagagcaaactctttgcatcatcttcttgattttcagtttcatcat---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      16269 87 +    290775 gggttatga--tctcca----ctctgttactaaaacttcacatgacctagagcaaactctttgcatcatcttcttgattttcagtttcatcat---
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2461761 87 -   3067355 gggttatga--tctcta----ctctgttactaaaacttcacatgacctagagcaaactctttgcatcatcttcttgattttcagtttcatcat---
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57782519 64 -  94987271 CGGTTATAA--GCTCCA----CT--GTTAC-AAAATTTCCAATGATCCAGGACAAA-------TACCAACC-------------TGTCACCAT---
i mm10.chr17               C 0 I 3
s canFam3.chr35            26182257 87 +  26524999 GGATTGGGC--CCACTACCCCCTCTGCCACAGAAGACTCACAAGGCCTGGCACTTACCCCTGCCATCATTC-------CTCCAGCCTCAACAGTGT
i canFam3.chr35            I 60 C 0
e dasNov3.JH569098           229586 15748 -    254539 I
e proCoq1.NW_012152574v1     468907 23622 +    730504 I
e otoGar3.GL873742          2154335 401 -   2232465 I

a score=1144753.000000
s hg38.chr6_GL000254v2_alt   709864 230 +   4827813 caataaacataa----aggctaaa--tcaaatgagctctggattgagttccagatccactattctgtgcttATTTGTCCCAAGGACTATATGCTTCTTATAGCTGATACTCTCACAAAGAACCAGAAGGAAGATTGCAGCAAATGCTCTTTCTCCACCATAGATAGCTACCAAGGGACCTTGAACTACATTAATCCTGGGC--AATA--TAAGCACAGTCA-TTGGTTTTCAAGACAAACA
s panTro5.chr6             29683319 226 + 175400573 caataaacataa----aggctaaa--tcaaatgagctctggattgagttccagatccactattctgtgcttATTTGTCCCAAGGACTATATGCTTCTTATAGCTGATACTCTCACAAAGAACCAGAAGGAAGATTGCAGCAAATGCTCTTTCTCCACC----ATAGCTACCAAGGGACCTTGAACTACATTAATCCTGGGC--AATA--TAAGCACAGTCA-TTGGTTTTCAAGACAAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29914057 226 + 173848474 caataaacataa----aggctaaa--tcaaatgagctctggattgagttccagatccactattctgtgcttATTTGTCCCAAGGACTATATGCTTCTTATAGCTGATACTCTCACAAAGAACCAGAAGGAAGATTGCAGCAAATGCTCTTTCTCCACC----ATAGCTACCAAGGGACCTTGAACTACATTAATCCTGGGC--AATA--TAAGCACAGTCA-TTGGTTTTCAAGACAAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5724411 226 +   6154872 CAATAAACATAA----AAGCTAAA--TCAAATGAGCTCTGGATTGAGTTCCAGATCCACTATTCTGTGCTTATTTGTCCCAAGGACTATATGCTTCTTATAGCTGATACTCTCACAAAGAACCAGAAGGAAGATTGCAGCAAATGCTCTTTCTCCACC----ATAGCTACCAAGGGACCTTGAACTACATTAATCCTGGGC--AATA--TAAGCACAGTCA-TTGGTTTTCAAGACAAACA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      17353 226 +     27237 caataaacataa----gggctaaa--taaaatgagctctggattgagttccagatccaccattctgtgcttATTTGTCCCAAAGAATATATGCTTCTTATAGCTGATATTCTTACAAAGAACCAGAAAGAAGATCGCAACAAACACTCCTTCTCCACC----ATGGCTACCAATGGACCTTGAACTACATTAATCCTGGGC--AATA--TAAGCACAGTCA-TTGGTTTTCAAGACAAACA
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2643553 226 -   2996164 caataaacataa----gggctaaa--taaaatgagctctggattgagttccagatccaccattctgtgcttATTTGTCCCAAAGAATATATGCTTCTTATAGCTGATATTCTTACAAAGAACCAGAAAGAAGATCGCAACAAACACTCCTTCTCCACC----ATGGCTACCAATGGACCTTGAACTACATTAATCCTGGGC--AATA--TAAGCACAGTCA-TTGGTTTTCAAGACAAACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     395220 226 +    766320 caataaacataa----gggctaaa--taaaatgagctctggattgagttccagatccaccattctgtgcttATTTGTCCCAAAGAATATATGCTTCTTATAGCTGATATTCTTACAAAGAACCAGAAAGAAGATTGCAACAAACACTCCTTCTCCACC----ATGGCTACCAACGGACCTTGAACTACATTAATCCTGGGC--AATA--TAAGCACAGTCA-TTGGTTTTCAAGACAAACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28853041 226 -  71996105 cagtaaacataa----gggctaaa--taaaatgagctctggattgagttccagatccactgttctgtacttATTTGTCCCAAAGAATATATGCTTCTTATAGCTGATATTCTTACAAAGAACCAGAAAGAAGATTGCAACAAACACTCCTTCTCCACC----ATGGCTACCAAGGGACCTTGAACTACATTAATCCTGGGC--AATA--TAAGCACAGTCA-TTGGTATTCAAGACAAACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      16356 226 +    290775 caataaacataa----gggctaaa--taaaatgagctctggattgagttccagatccaccattctgtgcttATTTGTCCCAAAGAATATATGCTTCTTATAGCTGATATTCTTACAAAGAACCAGAAAGAAGATTGCAACAAACACTCCTTCTCCACC----ATGGCTACCAAGGGACCTTGAAATACACTAATCCTGGGC--AATA--TAAGCACAGTCA-TTGGTTTTCAAGACAAACA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2461848 226 -   3067355 caataaacataa----gggctaaa--taaaatgagctctggattgagttccagatccactattctgtgcttatttgTCCCAAAGAATATATGCTTCTTATAGCTGGTATTCTTACAAAGAACCAGAAAGAAGATTGCAACAAACACTCCTTCTCCACC----ATGGCTACCAAGGGACCTTGAACTACATTAATCCTGGGC--AATA--CAAGCACAGTCA-TTGGTTTTCAAGACAAACA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2154736 224 -   2232465 aaataaaCAGAA----ATTCTGAG--TCAAATGAGTTTGGAATTGGGTTCCAGCTCCACTATTCTACACTTATTTCCCCCAAGAGCTCTTTGC----TGTATCTGATTCTCTCACAAAGAACCA-AAAGAAAATTGTGGTGAATGCTACTTCTCCTCT----ACCGCTACCAAGAAATTTTTAACTACATTAATTCTGGGCCAAACA--TAAGCATGTTCACTTGGTTGCCAGGGCTATCA
i otoGar3.GL873742         I 401 I 17075
s mm10.chr17               57782586 232 -  94987271 AAACAAATAGAAGTCTGATTTAAATTTAAATTTTGTGCTGTACTAGGTTAGAGATCTACTTCTCTGTGCTTATCC-TCCTGTGGATCTTCTGCTTCCTGAAGCTAAATATCTCACAAAGAACAAATTCAGTGAGTGTGGTGAACACCCCTTCTCCACC----ATCACTGCTAAAGGGTCTTG-ACACCATCAGTCCAGAGC--CACATTTAAGTAGGTCCA-CTTGATTCCACAGTAAACA
i mm10.chr17               I 3 C 0
s canFam3.chr35            26182344 220 +  26524999 CAGTAAGCAGTG----GGACTGAA--TCAAATGAGCCCTCTTCTGGGTTC-AGCTTCACCATTCTATGCCTATTTCCCTGAAGCACTTTCTGTTCCTTGTGGCTGATTTTCTTACAAAGAACCAGA---AAGATTATGGTGGATACTCCTTCCCCACC----ATCACTACTAAT-GATGTTGAGCTACATTAATCCTAGAC-AAATA--CAAGCACAGCCACTTGGTTGCT---GCAGATA
i canFam3.chr35            C 0 C 0
e dasNov3.JH569098           229586 15748 -    254539 I
e proCoq1.NW_012152574v1     468907 23622 +    730504 I

a score=35067.000000
s hg38.chr6_GL000254v2_alt   710094 7 +   4827813 CCACTCA
s panTro5.chr6             29683545 7 + 175400573 CCACTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29914283 7 + 173848474 CCACTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5724637 7 +   6154872 CCACTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      17579 7 +     27237 CTACTCA
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2643779 7 -   2996164 CTACTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     395446 7 +    766320 CTACTCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28853267 7 -  71996105 CTACTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      16582 7 +    290775 CTACTCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2462074 7 -   3067355 CTACTCA
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57782818 7 -  94987271 CCAGTCA
i mm10.chr17               C 0 I 84004
s canFam3.chr35            26182564 7 +  26524999 CCAGTCA
i canFam3.chr35            C 0 C 0
e dasNov3.JH569098           229586 15748 -    254539 I
e proCoq1.NW_012152574v1     468907 23622 +    730504 I
e otoGar3.GL873742          2154960 17075 -   2232465 I

a score=15015.000000
s hg38.chr6_GL000254v2_alt   710101 3 +   4827813 AAA
s panTro5.chr6             29683552 3 + 175400573 AAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29914290 3 + 173848474 AAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5724644 3 +   6154872 AAA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      17586 3 +     27237 AAA
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2643786 3 -   2996164 AAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     395453 3 +    766320 AAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28853274 3 -  71996105 AAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      16589 3 +    290775 AAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2462081 3 -   3067355 AAA
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35            26182571 3 +  26524999 AAA
i canFam3.chr35            C 0 I 20218
e mm10.chr17               57782825 84004 -  94987271 I
e dasNov3.JH569098           229586 15748 -    254539 I
e proCoq1.NW_012152574v1     468907 23622 +    730504 I
e otoGar3.GL873742          2154960 17075 -   2232465 I

a score=94556.000000
s hg38.chr6_GL000254v2_alt   710104 24 +   4827813 GCTAGGGAGAGTCCATCAGTGATC
s panTro5.chr6             29683555 24 + 175400573 GCTAGGGAGAGTCCATCAGTGATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29914293 24 + 173848474 GCTAGGGAGAGTCCATCAGTGATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5724647 24 +   6154872 GCTAGGGAGAGTCCATCAGTGATC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      17589 24 +     27237 GCTAGGGTAAGTCCATCAGTGATC
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2643789 24 -   2996164 GCTAGGGTAAGTCCATCAGTGATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     395456 24 +    766320 GCTAGGGTAAGTCCATCAGTGATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28853277 24 -  71996105 GCTAGGGAAAGTCCATCAGTGATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      16592 24 +    290775 GCTAGGGTAAGTCCATCAGTGATC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2462084 24 -   3067355 GCTAGGGGAAGTCCATCAGTGATC
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e dasNov3.JH569098           229586 15748 -    254539 I
e proCoq1.NW_012152574v1     468907 23622 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e otoGar3.GL873742          2154960 17075 -   2232465 I

a score=191331.000000
s hg38.chr6_GL000254v2_alt   710128 42 +   4827813 CCCATATTGAGTCTTCCCCCACTGTATTCTACCTTCCTGAAC
s panTro5.chr6             29683579 42 + 175400573 CCCATATTGAGTCTTCCCCCACTGTATTCTACCTTCCTGAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29914317 42 + 173848474 CCCATATTGAGTCTTCCCCCACTGTATTCTACCTTCCTGAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5724671 42 +   6154872 CCCATATTGAGTCTTCCCCCACTGTATTCTACCTTCCTGAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      17613 42 +     27237 CCCATATTGCGTCTTCCCCTACTGTATTCTACCTTCCTGAAC
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2643813 42 -   2996164 CCCATATTGCGTCTTCCCCTACTGTATTCTACCTTCCTGAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     395480 42 +    766320 CCCATATTGAGTCTTCCCCTACTGTATTCTACCTTCCTGAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28853301 42 -  71996105 CCCATATTGAGTCTTCCCCTACTGTATTCTACCTTCCTGAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      16616 42 +    290775 CCCATATTGAGTCTTCCCCTACTGTATTCTACCTTCCTGAAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2462108 42 -   3067355 CGCATATTGAGTCTTCCTCTACTGTATTCTACCTTCCTGAAC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2172035 39 -   2232465 CCCACTTTGAGCCCTCC---ACTCCATTCTACCTCCCTGAAC
i otoGar3.GL873742         I 17075 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e dasNov3.JH569098           229586 15748 -    254539 I
e proCoq1.NW_012152574v1     468907 23622 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I

a score=883923.000000
s hg38.chr6_GL000254v2_alt   710170 203 +   4827813 CTCACATC-----------TCCCTTACTCACA-CCTGCCATTGC--CCCTGAGCAAAACTTGACCTGCTTCTTGAAATCCCACTGCTCTGTCCCTAATATTTCCTCCTACCAACCTTTCT-CCCTGACACTCCCTTCCTCAACTTCCCTAATCCCATGGGACCCACTCACTATAG--TGCA-CCCCAGCTCCTGATGGTATCTGCTACC-AGAAGTATCCTC
s panTro5.chr6             29683621 203 + 175400573 CTCACATC-----------TCCCTTACTCACA-CCTGCCATTGC--CCCTGAGCAAAACTTGACCTGCTTCTTGAAATCCCACTGCTCTGTCCCTAATATTTCCTCCTACCAACCTTTCT-CCCTGACACTCCCTTCCTCAACTTCCCTAATCCCATGGGACCCACTCACTATAG--TGCA-CCCCAGCTCCTGATGGTATCTGCTACC-AGAAGTATCCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29914359 203 + 173848474 CTCACATC-----------TCCCTTACTCACA-CCTGCCATTGC--CCCTGAGCAAAACTTGACCTGCTTCTTGAAATCCCACTGCTCTGTCCCTAATATTTCCTCCTACCAACCTTTCT-CCCTGACACTCCCTTCCTCAACTTCCCTAATCCCATGGGACCCACTCACTATAG--TGCA-CCCCAGCTCCTGATGGTATCTGCTACC-AGAAGTATCCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5724713 204 +   6154872 CTCACATC-----------TCCCTTACTCACA-CCTGCCGTTGC--CCCTGAGCAAGCCTTGACCTGCTTCTTGAAATCCCACTGCTCTGTCCCTAATATTTCCTCCTACCAACCTTTCTCCCCTGACACTCCCTTCCTCAACTTCCCTAATCCCATGGGACCCACTCACTATAG--TGCA-CCCCAGCTCCTGATGGTATCTGCTACC-AGAAGTATCCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      17655 204 +     27237 CTCACATC-----------TCCCCTACTCACA-CGTGCCCTTGC--CCCTGAGCAAGCCTTTACCTGCTTCTTGAACTCCCACTGCTCTGTCCCTAATGCTTCCTCCTACCAAACTATCTCCCCTGACCCCCCCTTCCTTAACTTCCCTAATCCAATGGGACCCACTCACTGTAG--TGCA-CACCAGCTCCTAATGGTATCTGCTACC-AGAGGTGTCCTG
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2643855 204 -   2996164 CTCACATC-----------TCCCCTACTCACA-CGTGCCCTTGC--CCCTGAGCAAGCCTTTACCTGCTTCTTGAACTCCCACTGCTCTGTCCCTAATGCTTCCTCCTACCAAACTATCTCCCCTGACCCCCCCTTCCTTAACTTCCCTAATCCAATGGGACCCACTCACTGTAG--TGCA-CACCAGCTCCTAATGGTATCTGCTACC-AGAGGTGTCCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     395522 204 +    766320 CTCACATC-----------TCCCCTACTCACA-CGTGCCCTTGC--CCCTGAGCAAGCCTTTACCTGCTTCTTGAACTCCCACTGCTCTGTCCTTAATGCTTCCTCCTACCAAACTGTCTCCCCTGACCCCCCCTTCCTTAACTTCCCTAATCCAATGGGACCCACTCACTGTAG--TGCA-CACCAGCTCCTAATGGTATCTGCTACC-AGAGGTGTCCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28853343 204 -  71996105 CTCACATC-----------TCCCCTGCTCACA-CGTGCCCTTGC--CCCTGAGCGAGCCTTTACCTGCTTCTTGAACTCCCACTGCTCTGTCCCTAATGCTTCCTCCTACCAAACTTTCTCCCCTGACACCCCCTTCCTTAACTTCCCTAATCCAATGGGACCCACTCACTGTAG--TGCA-CACCAGCTCCTGATGGTATCTGCTACC-AGAGGTGTCCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      16658 204 +    290775 CTCACATC-----------TCCCCTGCTCACA-CGTGCCCTTGC--CCCTGAGCAAGCCTTTACCTGCTTCTTGAACTCCCACTGCTCTGTCCTTAATGCTTCCTCCTACCAAACTGTCTCCCCTGACCCCCCCTTCCTTAACTTCCCTAATCCAATGGGACCCACTCACTGTAG--TGCA-CACCAGCTCCTGATGGTATCTGCTACC-AGAGGTGTCCTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2462150 204 -   3067355 CTCACATC-----------TCCCCTACTCACA-CGTGCCCTTGT--CCCTGAGCAAGCCTTTACCTGCTTCTTGAACTCTCACTGCTCTGTCCCTAATGCTTCCTCCTACCAAACTTTCTCCCCTGACACCCTCTTCCTTAACTTCCCTAATCCAATGGGACCCACTCACTGTAG--TGCA-CACCAGCTCCTGATGGTATCTGCTACC-AGAGGTGTCCTC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2172074 214 -   2232465 CTGACACCCAAGAACTATGTCCCAAACTCACACCCTGCCCTTG---CCCTAAAAAACCACTGGCTCTCTTTTTGAACTTCCATTGCCCTGTCCC-ACTGCTTCTTCCTTCCAGCCTCTCTTGTCTGAAACTCCCTACCTTAATTTCCCCAGTCCCAAAAGACCTACTCTCTCAGG--TGTGTCCCCAGCCCCTGATGGTATCTTCTACCAAGAGGTATCC--
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           245334 199 -    254539 CTCACACC-----------TGCTCTCCTGGCA-TCTGGCTTCGCAAATCCCAGCAACCCCCGCCCTCCT-----AATTCCCTCTTCCAGAACCCCCGTCCCCTCTCCC-TCAGACGCGGTCCTTCCAGCCTCCTTCCCTTACCTTCCCTGCTCCCGGAGGACCCACTCGCTAAAACCCCCG-CCCCAGCTTCCAAAGGAGTCTGCTACA----GGCGTCCTC
i dasNov3.JH569098         I 15748 I 51
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     468907 23622 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I

a score=527791.000000
s hg38.chr6_GL000254v2_alt   710373 139 +   4827813 Attctttctttctttttttttgacaggattttactcttgttgcccaggctagagtgcagtggcacgatcttggctcactgcaacctctgccttctggtttcaagcgattctcctgcctcagcctcctgagtagctggga
s panTro5.chr6             29683824 138 + 175400573 Attctttctttc-ttttttttgacaggattttactcttgttgcccaggctagagtgcagtggcacgatctcggctcactgcaacctctgccttctggtttcaagcgattctcctgcctcagcctcctgagtagctggga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29914562 137 + 173848474 Attctttctttc--tttttttgacaggattttactcttgttgcccaggctagagtgcagtggcacgatctcggctcactgcaacctctgccttctggtttcaagcgattctcctgcctcagcctcctgagtagctggga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5724917 138 +   6154872 Attctttctttc-ttatttttgacaggattttactcttgttgcccaggctagagtgcagtggcacgatctcagctcactgcaacctctgccttctggtttcaagcaattctcctgcctcagcctcctgagtagctggga
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      17859 137 +     27237 Attctttctttc--tttttttgacaggattttactcttgttgcccaggctagagtgcagttgcacgatctcggctcactgcaacctctgccttccggttttaggtgatcctcctgcctcagccttctgagtagctggga
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2644059 137 -   2996164 Attctttctttc--tttttttgacaggattttactcttgttgcccaggctagagtgcagttgcacgatctcggctcactgcaacctctgccttccggttttaggtgatcctcctgcctcagccttctgagtagctggga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     395726 137 +    766320 Gttctttctttc--tttttttgacaggattttactcttgttgcccaggctagagtgcagttgcacgatctcggctcactgcaacctctgccttctggtttcaagtgatcctcctgcctcagccttctgagtagctggga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28853547 137 -  71996105 Attctttctttc--tttttttgacaggattttactcttgttgcccaggctagagtacagttgcacgatctcggctcactgcaacctctgccttccggtttcaagtgatcctcctgcctcagccttctgagtagctggga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      16862 137 +    290775 Gttctttctttc--tttttttgacaggattttactcttgttgcccaggctagagtgcagttgcacgatctcggctcactgcaacctctgccttctggtttcaagtgatcctcctgcctcagccttctgagtagctggga
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2462354 137 -   3067355 Attctttctttc--tttttctgacaggattttactcttgttgttcaggctagagtgcagttgcacgatctcggctcactgcaacctctgccttccagtttcaagtgatcctcctgcctcagccttctgagtagctggga
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2172288  42 -   2232465 -----TTCTTCC---------------------CTTGCGTTGCAAAGG-----------------------------------------------------AAGTGA------------------CTGAGGAGTTGGGG
i otoGar3.GL873742         C 0 I 55
e mm10.chr17               57782825 84004 -  94987271 I
e dasNov3.JH569098           245533  51 -    254539 I
e proCoq1.NW_012152574v1     468907 23622 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I

a score=493498.000000
s hg38.chr6_GL000254v2_alt   710512 135 +   4827813 ttacaggagcctaccaccatgcccagctaatttatgtatttttagtagagacggggtttcaccatgttggccaggctggtctcgaacttctgacctcatgatccacctgccttggcctcccaaagagctgggatt
s panTro5.chr6             29683962 135 + 175400573 ttacaggagcctaccaccatgcccagctaatttatgtatttttagtagagacggggtttcaccatgttggccaggctggtcttgaacttctgacctcatgatccacctgccttggcctcccaaagagctgggatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29914699 135 + 173848474 ttacaggagcctaccaccatgcccagctaatttatgtatttttagtagagacggggtttcaccatgttggccaggctggtcttgaacttctgacctcatgatccacctgccttggcctcccaaagagctgggatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5725055 135 +   6154872 ttacaggagcctaccaccatgcccagctaatttatgtatttttagtagagacagggtttcaccatgttggccaggctggtctcgaacttctgacctcatgatccacctgccttggcctcccaaagagctgggatt
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      17996 134 +     27237 ttacaagtgcctaccatcatgcccagctaatttttgtatttttagtagagac-aggtttcaccatgttgcccaggctcatcttgaacttctgacctcgtgatccacctgccttcgcctcccaaagagctgagatt
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2644196 134 -   2996164 ttacaagtgcctaccatcatgcccagctaatttttgtatttttagtagagac-aggtttcaccatgttgcccaggctcatcttgaacttctgacctcttgatccacctgccttcgcctcccaaagagctgagatt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     395863 134 +    766320 ttacaagtgcctaccatcatgcccagctaatttttgtatttttaatagagac-gggtttcaccatgttgcccaggctcatcttgaacttctgacctcgtgatccacctgccttcgcctcccaaagagctgggatt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28853684 130 -  71996105 ttacaagtgcctaccaccacgcccagctaatttttgtatttttagtagagac-gagtttcaccatgttgcccaggctcgtcttgaacttctgacctcatgatccacccgcttttg----ccaaagagctgggatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      16999 134 +    290775 ttacaagtgcctaccatcatgcccagctaatttttgtatttttaatagagac-tggtttcaccatgttgcccaggctcatcttgaacttctgacctcgtgatccacctgccttcgcctcccaaagagctgggatt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2462491 134 -   3067355 ttacaagtgcctaccaccacacccagctaatttttgaatttttagtagagat-gggtttcaccatgttgcccaggcttgtcttgaacttctgacctcgtgatccacccacctttgcctcccaaagagctgggatt
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e dasNov3.JH569098           245533  51 -    254539 I
e proCoq1.NW_012152574v1     468907 23622 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e otoGar3.GL873742          2172330  55 -   2232465 I

a score=405996.000000
s hg38.chr6_GL000254v2_alt   710647 101 +   4827813 acaggcgtgagccactgtgcccagccAGTATCCTCATTCTTTAGCTTTGCAGAACTGAAGTAAGAAGTGACTGTGGCATCAGGGAGGGAGG-GTagaagtca
s panTro5.chr6             29684097 101 + 175400573 acaggcgtgagccactgtgcccagccAGTATCCTCATTCTTTAGTTTTGCAGAACTGAAGTAAGAAGTGACTGTGGCATCAGGGAGGGAGG-GTAGAAGTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29914834 101 + 173848474 acaggcgtgagccactgtgcccagccAGTATCCTCATTCTTTAGCTTTGCAGAACTGAAGTAAGAAGTGACTGTGGCATCAGGGAGGGAGG-GTAGAAGTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5725190 101 +   6154872 acaggcatgagccactgtgcccggccAGTATCCTCATTCTTTAGCTTTGCAGAACTGAAGTAAGAAGTGACTGTGGTATCAGGGAGGGAGG-GTagaagtca
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      18130 101 +     27237 acaggcgtgagacactgtgcctggccAGTATCCTTATTCTTTAGCTTTGCAGAACTGAAGTAGGAAGTGACTGTGGCATCAGGgagggagg-gtagaagtca
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2644330 101 -   2996164 acaggcgtgagacactgtgcctggccAGTATCCTTATTCTTTAGCTTTGCAGAACTGAAGTAGGAAGTGACTGTGGCATCAGGgagggagg-gtagaagtca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     395997 101 +    766320 acaggtgtgagacaccgtgcctggccAGTATCCTTATTCTTTAGCTTTGCAGAACTGAAGTAGGAAGTGACTGTGGCATCAGGgagggagg-gtagaagtca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28853814 101 -  71996105 acaggcgtgagacactgtgcctggccAGTATCCTTATTCTTTAGCTTTGCAGAACTGAAGTAGGAAGCGACTGTAGCATCAGGgagggatg-gtagaagtca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      17133 101 +    290775 acaggtgtgagacaccgtgcctggccAGTATCCTTATTCTTTAGCTTTGCAGAACTGAAGTAGGAAGTGACTGTGGCATCAGGgagggagg-atagaagtca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2462625 101 -   3067355 acaggcgtgggacactgtgcctggccAGTATCCTCATTCTTTAGCTTTGCAGAACTGAAGTAGGAAGTGACTGTGGCATCAGGgagggagg-gtagaagtca
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2172385  76 -   2232465 GCAGGC-TGAACCACTGGGTAAAGACA-------------------------AAACAAAAAAggcgatgcctgtggctcaaaggagtaaggcgcaggtccca
i otoGar3.GL873742         I 55 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e dasNov3.JH569098           245533  51 -    254539 I
e proCoq1.NW_012152574v1     468907 23622 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I

a score=1136669.000000
s hg38.chr6_GL000254v2_alt   710748 275 +   4827813 gatggaagggaagggagaaggagagaaagaagaaacagag-gcaggctgaagaactgagcagagaaaagagaaagaacaaaaaagaCCTCAGAGGAAG----ACTCACCGGCTCACAAGGAAAGCCATCTCTGTGCATCCCAGGCCAATCTCTTCACAGGGCTTGGAGAAACCTCCCAACCAGAGCTCACTCCCACAGTCTATGCTCACTGCTTCCCTGCATCAGCTCCTCCTGTGGCAGCATGGTCCCCCTGCGTT-TCTGCTCCCCACTGAGCTCTCTG
s panTro5.chr6             29684198 275 + 175400573 GATGGAagggaagagagaaggagagaaagaagaaacagag-gcaggctgaagaactgagcagagaaaagagaaagaacaaaaaagagctcagaggaag----aCTCACCGGCTCACAAGGAAAGCCATCTCTGTACATCCCAGGCCAATCTCTTCACAGGGCTTGGAGAAACCTCCCAACCAGAGCTCACTCCCACAGTCTATGCTCACTGCTTCCCTGCATCAGCTCCTCCTGTGGCAGCATGGTCCCCCTGCCTT-TCTGCTCCCCACTGAGCTCTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29914935 275 + 173848474 GATGGAAGGAAAGAGAGAAGGAGAGAAAGAAGAAACAGAG-GCAGGCTGAAGAACTGAGCAGAGAAAAGAGAAAGAACAAAAAAGAGCTCAGAGGAAG----ACTCACCAGCTCACAAGGAAAGCCATCTCTGTACATCCCAGGCCAATCTCTTCACAGGGCTTGGAGAAACCTCCCAACCAGAGCTCACTCCCACAGTCTATGCTCACTGCTTCCCTGCATCAGCTCCTCCTGTGGCAGCATGGTCCCCCTGCCTT-TCTGCTCCCCACTGAGCTCTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5725291 275 +   6154872 gatggaagggaagggagaaggagagaaagaagaaacagag-gcaggctgaagaactgagcagagaaaagagaaagaacaaaaaagaCCTCAGAGGAAG----ACTCACCTGCTCACAAGGAAAGCCATCTCTATGCATCCCAGGCCAGTCTCTTCACAGGGCTTGGAGCAACCTCCCAACCAGAGCTCACTCCCACAGTCTATGCTCACTGCTTCCCTGCATCAGCTCCTCCTGTGGCAGCATGGTCCCCCTGCCTT-TCTGCTCCCCGCTGAGCTCTCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      18231 279 +     27237 gatggaagggaagggagagggagagaaagaggAAATAGAG-GCAGGCTGAAGAACTGAGCATagaaaagagaaagaacaaaaaagacctcagaggaaggaaaaaagaCCTGCTCACAAGGAAAGCCATCTCTGTGCATCCTGGGCCAGTCTCTTCACAGGACTTGGAGCAACCTCCCAACCAGAGCTCACTCCCACAGTCTATGCTCACTGATTCCCCCCATCAGCTGCTCCTGTGGCAGCCTGGTCCCCCTGCCTT-TCTGCTCCCCACTGAGCTCTCTG
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2644431 279 -   2996164 gatggaagggaagggagagggagagaaagaggaaatagag-gcaggctgaagaactgagcatagaaaagagaaagaacaaaaaagacctcagaggaaggaaaaaagaCCTGCTCACAAGGAAAGCCATCTCTGTGCATCCTGGGCCAGTCTCTTCACAGGACTTGGAGCAACCTCCCAACCAGAGCTCACTCCCACAGTCTATGCTCACTGATTCCCCCCATCAGCTGCTCCTGTGGCAGCCTGGTCCCCCTGCCTT-TCTGCTCCCCACTGAGCTCTCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     396098 279 +    766320 gatggaagggaagggagagggagagaaagaggAAATAGAG-GCAGGCTGAAGAGCTGAGCATagaaaagagaaagaacaaaaaagacctcagaggaaggaaaaaagaCCTGCTCACAAGGAAAGCCATCTCTATGCATCCTGGGCCAGTCTCTTCACAGGACTTGGAGCAACCTCCCAACCAGAGCTCACTCCCACAGTCTATGCTCACTGATTCCCCCCATCAGCTGCTCCTGTGGCAGCCTGGTCCCCCTGCCTT-TCTGCTCCCCACTGAGCTCTCTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28853915 275 -  71996105 gatggaagggaagggagagggagagaaagaggAAATAGAG-GCAGGCTGAAGAACTGAGCATAGAAAAGAGAAAGAACAAAAAAGACCTCAGAGGAAG----ACTCACCTGCTCACAAGGAAAACCATCTCTGTGCATCCTGGGCCAGTCTCTTCACAGGACTTGGAGCAACCTCCCAACCAGAGCTCACTCCCACAGTCTGTGCTCACCGATTCCCCCCATCAGCTGCTCCTGTGGCAGCCTGGTCCCCCTGCCTT-TCTGCTCCCCACTGAGCTCTCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      17234 279 +    290775 gatggaagggaagggagagggagagaaagaggaaATAGAG-GTAGGCTGAAGAACTGAGCATagaaaagagaaagaacaaaaaagacctcagaggaaggaaaaaagaCCTGCTCACAAGGAAAGCCATCTCTGTGCATCCTGGGCCAGTCTCTTCACAGGACTTGGAGCAACCTCCCAACCAGAGCTCACTCCCACAGTCTATGCTCACTGATTCCCCCCATCAGCTGCTCCTGTGGCAGCCTGGTCCCCCTGCCTT-TCTGCTCCCCACTGAGCTCTCTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2462726 275 -   3067355 gatggaagggaagggagagggagagaaagaggAAATAGAG-GCAGGCTGAAGAACTGAGCATAGAAAAGAGAAAGAACAAAAAAGACCTCAGAGAAAG----ACTCACTTGCTCACAAGGAAAACCATCTCTGTGCATCCTGAGCCAGTCTCTTCACAGGACTTGGAGCAACCTCCCAACCAGAGCTCACTCCCACAGTCTATGCTCACTGATTCCCCCCATCAGCTGCTCCTGTGGCAGCCTGGTTCCCCTGCCTT-TCTGCTCCCCACTGAGCTCTCTG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2172461 203 -   2232465 tatgccagaggtggcgg-----------gttcaaacccagccccggccaaaaaccgcaacaaaCAACAAAAAGACAAAACAAAAGGCCCCAGGGGAGA----ACTCACCAGTTCACAAGGAAAACCATGTATGTACTTCCTAGGCCAGCCTGTTTTCAGAGCTTGGAG---------------------------CAGTCTGT---------------------------------GCAGCCTGGT-CCCCTGCCTC-ACT-CTCTTCCTCAGGATCTCTG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           245584 227 -    254539 GGTGGAAGGGAAGGGAGAGGGTGGGGGAGACG---CACAG-GCAGGCGGAGGCACTGGGCGGAGAGGA------------AAACCCCGTCACGGGAAG----------------------GCAGCGGCGTCTGCGC-CCCCGGGCCG--CCTCTCTCAGAGCCGCGGGCAGCCCGCGCAGC----CTCACGCCC---GCCTGCACCCACC--CGCCCCGCGTCAGAGTCTGCCGTGGCCGCCCGGT-CTCCTGCTTCACCTGCCCCCCA--AACGTCCCT-
i dasNov3.JH569098         I 51 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     468907 23622 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I

a score=501708.000000
s hg38.chr6_GL000254v2_alt   711023 86 +   4827813 GGATTCACAAATCAGTGCCCTAGGGAGGGCTTGGAGAGCCTAGCACGTGGGGATCTTACACAGGGGCCAGGAAAGGGATGTAGGAC
s panTro5.chr6             29684473 86 + 175400573 GGATTCACAAATCAGTGCCCTAGGGAGGGCTTGGAGAGTCTAGCAGGTGGGGATCTTACACAGGGGCCAGGAAAGGGATATAGGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29915210 86 + 173848474 GGATTCACAAATCAGTGCCCTAGGGAGGGCTTGGAGAGTCTAGCAGGTGGGGATCTTACACAGGGGCCAGGAAAGGGATGTAGGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5725566 86 +   6154872 GGATTCACAAATCAGTGCCCTAGGGAGGGCTTGGAGAGCCTAGCAGGTGGGGATCTTACACAGGGGCCAGGAAAGGCATGTAGGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      18510 86 +     27237 GGACTCACAGATCAGTGCCCTGGGGTGGGCTTGGAGAGACTAGCAGGTGGGGATCTTACACAGGGGCCAGGAAAGGAATGTAGGAC
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2644710 86 -   2996164 GGACTCACAGATCAGTGCCCTGGGGCGGGCTTGGAGAGACTAGCAGGTGGGGATCTTACACAGGGGCCAGGAAAGGAATGTAGGAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     396377 86 +    766320 GGACTCACAAATCAGTGCCCTGGGGCCGGCTTGGAGAGACTAGCAGGTGGGGATCTTACACAGGGGCCAGGAAAGGAATGTAGGAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28854190 86 -  71996105 GGATTCACAAATCAGTGCCCTAGGGCGGGCTTGGAGAGCCTAGCAAGTGGGGATCTTACACAGGGGCCAGGAAAGGAATGTAGGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      17513 86 +    290775 GGACTCACAAATCAGTGCCCTGGGGCCGGCTTGGAGAGACTAGCAGGTGGGGATCTTACACAGGGGCCAGGAAAGGAATGTAGGAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2463001 86 -   3067355 GGATTCACAAATCAGTGCCCTAGGGCGGGCTTGGAGAGCCTAGCAGGTGGGAATCTTGCACAGGGGCCAGGAAAGGAATGTAGGAC
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     492529 86 +    730504 GGATTCACAGATCAGTGCCCCAGGGAGGGCCTGGAGAGTCTAGTGGGTGGGGATCTCACACAGGAGCCAGGAAAGGGCTGTAGGAC
i proCoq1.NW_012152574v1   I 23622 I 57
s otoGar3.GL873742          2172664 86 -   2232465 GGATTCACAGATCAGTGTCCCAGGGAGGGCTTGCAGAGCTGAATGGGTTGAGGTCTCACACAGGGGACAGGAAAGGGCTGTAGGAT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           245811 72 -    254539 GGATTCACGGATGGGCGCCCTGTGGAGGGATGCGAGGGCCTAGCAGGT--------------GGGGCCAGGAAAGGGGCGAGGGAC
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e canFam3.chr35            26182574 20218 +  26524999 I

a score=288701.000000
s hg38.chr6_GL000254v2_alt   711109  74 +   4827813 TCAGGAAGAGACACTGAAC-----AAAGGCTGTGGCTCAGTCCTGGAAA-TGGGAGCGTGTGCTTGTCCATTGCCAGCCT----------------------------------------------
s panTro5.chr6             29684559  74 + 175400573 TCAGGAAGAGACACTGAAC-----AAAGGCTGTGGCTCAGTCCTGGAAA-TGGGAGTGTGTGCTTGTCCATCGCCAGCCT----------------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29915296  74 + 173848474 TCAGGAAGAGACACTGAAC-----AAAGGCTGTGGCTCAGTCCTGGAAA-TGGGAGTGTGTGCTTGTCCATCGCCAGCCT----------------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5725652  74 +   6154872 TCAGGAGGAGACACTGAAC-----AAAGGCTCTGGCTCAATCCTGGAAA-TGGGAGTGTGTGCTTGTCCATTGCCAGCCT----------------------------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      18596  74 +     27237 TCAGGAGGAGACACTGAAC-----AAAGGCTCTAGCTCAGTCCTGGAAA-TGGGAGTGTGTGCTTGTGCATTGCCAGCCT----------------------------------------------
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2644796  74 -   2996164 TCAGGAGGAGACACTGAAC-----AAAGGCTCTAGCTCAGTCCTGGAAA-TGGGAGTGTGTGCTTGTGCATTGCCAGCCT----------------------------------------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     396463  74 +    766320 TCAGGAGGAGACACTGAAC-----AAAGGCTCTAGCTCAGTCCTGGAAA-TGGGAGTGTGTGCTTGTTCATTGCCAGACT----------------------------------------------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28854276  74 -  71996105 TCAAGAGGAGACACTGAAC-----AAAGGCTCTAACTCAGTCCTGGAAA-TGGGAGCATGTGCTTGTCCATTGCCAGCCT----------------------------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      17599  74 +    290775 TCAGGAGGAGACACTGAAC-----AAAGGCTCTAGCTCAGTCCTGGAAG-TGGGAGTGTGTGCTTGTTCATTGCCAGACT----------------------------------------------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2463087  74 -   3067355 TCAGGGGGAGACACTGAAC-----AAAGGCTCTAACTCAGTCCTGGAAA-TGGGAGAGTGTGCTTGTCCATTGCCAGACT----------------------------------------------
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2172750  59 -   2232465 ACTGGAGTAGATACAGAGC-----AAAGGCTCCTGCT--ATCCAGGAAA-TGGGAGTGGCTG-------------AGACT----------------------------------------------
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           245883 124 -    254539 -GTGGAGTTGATGCTGACCGAGAGGAAAGCTC-GGCTCAGCGCAGGAAATTGGGTGCCTGCGTCCGCGCGCGTCCGCTCTCCAGGGCGTGCGCTCTCCAGGGCGTGCGCTCTCCAGGGCGTGCGCT
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     492615  57 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I

a score=484189.000000
s hg38.chr6_GL000254v2_alt   711183  82 +   4827813 --------------CTCTGC----------CTCTCTAGGTTGTGTGCCCTCACTGGCCTTAACTCTTTCCAGTCAGGGAAGACTAGGAAAGAGTTGGAAGAGGAAA
s panTro5.chr6             29684633  82 + 175400573 --------------CTCTGC----------CTCTCTAGGTTGTGTGCCCTCACTGGCCTTAACTCTTTCCAGTCAGGGAAGACTAGGAAAGAGTTGGAAGAGGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29915370  82 + 173848474 --------------CTCTGC----------CTCTCTAGGTTGTGTGCCCTCACTGGCCTTAACTCTTTCCAGTCAGGGAAAACTAGGAAAGAGTTGGAAGAGGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5725726  82 +   6154872 --------------CTCTGC----------CTCTCTAGGTTGTGTGCCCTCACTGGCCTTAACTCTTTCCAGTCAGAGAAGACTAGGAAAGAGTTGGAAGAGGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      18670  82 +     27237 --------------CTCTGC----------CTCTCTAGGTTGTGTGCTCTCACTGGCCTTAACTCTTTCCAGTCAGGGAAGACTAGCAAAGAGTTGGAAGAGGAAA
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2644870  82 -   2996164 --------------CTCTGC----------CTCTCTAGGTTGTGTGCTCTCACTGGCCTTAACTCTTTCCAGTCAGGGAAGACTAGCAAAGAGTTGGAAGAGGAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     396537  82 +    766320 --------------CTCTGC----------CTCTCTAGGTTGTGTGCTCTCACTGGCCTTAACTCTTTCCAGTCAGGGAAGACTAGCAAAGAGTTGTAAGAGGAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28854350  82 -  71996105 --------------CTCTGC----------CTCTCTAGGTTGTGTGCTCTCACTGGCCTTAACTCTTTCCAGTCAGGGAAGACTAGCAAAGAGTTGGAAGAGGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      17673  82 +    290775 --------------CTCTGC----------CTCTCTAGGTTGTGTGCTCTCACTGGCCTTAACTCTTTCCAGTCAGGGAAGACTAGCAAAGAGTTGGAAGAGGAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2463161  82 -   3067355 --------------CTCTGC----------CTCTCTAGGTTGTGTGCTCTCACTGGCCTTAACTCTTTCCAGTCAGGGAAGACTAGCAAAGAGTTGGAAGAGGAAA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     492672  82 +    730504 --------------CTCTGC----------CTCTCTAGGGTGTGTGCTCTCACTGGTCTTAACTCTTCCCAGTCAGGGCTGACTAGGAAAGGGCAGGAAGAGGAAA
i proCoq1.NW_012152574v1   I 57 I 142
s otoGar3.GL873742          2172809  82 -   2232465 --------------TTCTGC----------CTCTCTAGGGTGTGTGCTCTCACTGGTCTTAACTCTTCCCAGTCAGGAACAATTAGGAAAGGGTGGGAAGAGGAAA
i otoGar3.GL873742         C 0 I 4
s dasNov3.JH569098           246007 103 -    254539 CTCCAGGGCGTGCGCTCTCCAGGGCGTGCGCTCTCCAGGGCGTCCACTCTCCCGGGCCTCAGATCTCCGCACCCAGGCCCG-CGAGGAAAGGGCGGGAGGAGGA--
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e canFam3.chr35            26182574 20218 +  26524999 I

a score=630766.000000
s hg38.chr6_GL000254v2_alt   711265 143 +   4827813 TATTGTAGAAGAAAGAAGAG---------------AACTCAGGTACATCAGGGCCACCAAGAAACAGGGGCTCTGGGTC---------TCCCAGGGACATAAGGAGAAGGATTAGGAGCTGACCAGGCTTGCTACACAAAAGATTCCAGGGTTGATCCTCTGAGAGT
s panTro5.chr6             29684715 143 + 175400573 TGTTGTAGAAGAAAGAAGAG---------------AACTCAGGTACATCAGGGCCACCAAGAAACAGGGGCTGTGGGTC---------TCCCAGGGACATAAGGAGAAGGATTAGGAGCTGACCAGGCTTGCTACACAAAAGATTCCAGGGTTGATCCTCTGAGAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29915452 143 + 173848474 TGTTGTAGAAGAAAGAAGAG---------------AACTCAGGTACATCAGGGCCACCAAGAAACAGGGGCTCTGGGTC---------TCCCAGGGACATAAGGAGAAGGATTAGGAGCTGACCAGGCTTGCTACACAAAAGATTCCAGGGTTGATCCTCTGAGAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5725808 143 +   6154872 TGTTGTAGAAGAAAGAAGAG---------------AACTCAGGTACATCAGGGCCACCAAGAAACAGGGGCTCTGGATC---------TCCCAGGGACATAAGGAGAAGGATTAGGAGCTGACCAGGCTTGCTACACAAAAGATTCCAGGGTTGATCCTCTGAGAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      18752 143 +     27237 TGTTGTAGAAGAAGGAAGAG---------------AACTCAGGTACATCAGGGCCACCAAGAAACAGGGGCTCTGGGTC---------TCCCAGGGACATAAGGAGAAGGATTAGGAGCTGACCAGGCTTGCTACACAAAAGATTCCAGGGTTGATCCTCTGAGAGC
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2644952 143 -   2996164 TGTTGTAGAAGAAGGAAGAG---------------AACTCAGGTACATCAGGGCCACCAAGAAACAGGGGCTCTGGGTC---------TCCCAGGGACATAAGGAGAAGGATTAGGAGCTGACCAGGCTTGCTACACAAAAGATTCCAGGGTTGATCCTCTGAGAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     396619 143 +    766320 TGTTGTAGAAGAAGGAAGAG---------------AACTCAGGTACATCAGGGCCACCAAGAAACAGGGGCTCTGGGTC---------TCCCAGGGACATAAGGAGAAGGATTAGATGCTGACCAGGCTTCCTACACAAAAGATTCCAGGGTTGATCCTCTGAGAGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28854432 143 -  71996105 TGTTGTAGAAGAAGGAAGAG---------------AACTCAGGTACATCAGGGCCACCAAGAAACAGGGGCTCTGGGTC---------TCCCAGGGACATAAGGAGAAGGATTAGGAGCTGACCAGGCTTGCTACACAAAAGATTCCAGGGTTGATCCTCTGAGAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      17755 143 +    290775 TGTTGTAGAAGAAGGAAGAG---------------AACTCAGGTACATCAGGGCCACCAAGAAACAGGGGCTCTGGGTC---------TCCCAGGGACATAAGGAGAAGGATTAGAAACTGACCAGGCTTCCTACACAAAAGATTCCAGGGTTGATCCTCTGAGAGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2463243 143 -   3067355 TGTTGTAGAAGAAGGAAGAG---------------AACTCAGGTACATCATGGCCACCAAGAAACAGGGGCTCTCGGTC---------TCCCAGGGACATAAGGAGAAGGATTAGGAGCTGACCAGTCTTGCTACACAAAAGATTCCAGGGCTGATCCTCTGAGAGC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2172895 147 -   2232465 TAAGTGAGAAAAAGGGAGAG---------------AATTCTAATGAAACAGGGCTATTGAGAAACAGAGGCCTTGGGCCCCGCCCCCACCCCCCAGCCAT-AGGTAAAGGAAGAGAAGCTGACCTGGCTTGCTGTCCCAAATATTCCTG----ACTCCTCTGGGTGC
i otoGar3.GL873742         I 4 C 0
s dasNov3.JH569098           246110 131 -    254539 -----CAGGGGAGAGAAGAGGTGGCCAGGGGAGCTGGCCCCGGCCCCACAGGGGCGTGA--GAGCGGGAGCGAGGGTCC---------TCC--GGGACGACAGGGGAAG-----GGGCCCTACCTGCCCTGCCGCTCCGCGGGTTCCCGG-------------GAGC
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     492754 142 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I

a score=322928.000000
s hg38.chr6_GL000254v2_alt   711408 71 +   4827813 TGAGAAAAACAGAAAGTGGGATCTCAGTG----CAAACTTCAAGCTTCAAAGATGCCACC---CATC-ATCTATTCAAC
s panTro5.chr6             29684858 71 + 175400573 TGAGAAAAACAGAAAGTGGGATCTCAGTG----CAAACTTCAAGCTTCAAAGATGCCACC---CATC-ATCTATTCGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29915595 71 + 173848474 TGAGAAAAACAGAAAGTGGGATCTCAGTG----CAAACTTCAAGCCTCAAAGATGCCACC---CATC-ATCTATTCAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5725951 71 +   6154872 TGAGAAAAACAGAAGGTGGGATCTCAGTG----CAAACTTCAAGCTTCAAAGATGCCACC---CATC-ATCTATTCAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      18895 71 +     27237 TGAGAAAAACATAAGGTGGGGTATTAGTG----CAAACTTCAAGCTTCAAAGATGCCACC---CACT-GTCTATTCAAC
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2645095 71 -   2996164 TGAGAAAAACATAAGGTGGGGTATTAGTG----CAAACTTCAAGCTTCAAAGATGCCACC---CACT-GTCTATTCAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     396762 71 +    766320 TGAGAAAAACATAAGGTGGAGTCTTAGTG----CAAACTTCAAGCTTCAAAGATGCCACC---CACT-GTCTATTCAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28854575 71 -  71996105 TGAGAAAAACATAAGGTGGGGTCTTAGTG----CAAACTTCAAGCTTCAAAGATGCCACC---CACT-GTCTATTCAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      17898 71 +    290775 TGAGAAAAACATAAGGTGGGGTCTTAGTG----CAAACTTCAAGCTTCAAAGATGCCACC---CACT-GTCTATTCAAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2463386 71 -   3067355 TGAGAAAAACATAAAGTGGGGTCTTAGTG----CAAACTTCAAGCTTCAAAGATGCCACC---CACT-GTCTATTCACC
i colAng1.NW_012115566v1   C 0 T 7373
s proCoq1.NW_012152574v1     492896 72 +    730504 TGAGAAAATCAGGAGGTGGAATCTCAGTG----CAGACTTCAGGCCCCAAAGATGCCACT---CACTCATCTACTCAGC
i proCoq1.NW_012152574v1   I 142 I 2
s otoGar3.GL873742          2173042 57 -   2232465 TGAGAAAAACAGGAGGTGCAGTCTCAGTGCAGACAGACTTCAGGCTTCA----------------------CCCTCAGC
i otoGar3.GL873742         C 0 I 2
s dasNov3.JH569098           246241 48 -    254539 GGAGGA----------------------G----CAGAGCTCGGGCTGCGAAGGTGCCGCCGCTCCTC-GTCCACC----
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e canFam3.chr35            26182574 20218 +  26524999 I

a score=295475.000000
s hg38.chr6_GL000254v2_alt   711479 59 +   4827813 T-TTTTTTTTCTTTTGGCTAACCCTTTACACTTCTTTCAAGTCTGCGAATAATTATCAAG
s panTro5.chr6             29684929 59 + 175400573 T-TTTTTTTTCTTTTGGCTAACCCTGTACACTTCTTTCAAGTCTGCGAATAATTATCAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29915666 59 + 173848474 T-TTTTTTTTCTTTTGGCTAACCCTGTACACTTCTTTCAAGTCTGCGAATAATTATCAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5726022 59 +   6154872 T-TTTTTTTTCTTTTGGCTAACCCTATACACTTCTTTCAAGTCTGCGAATAATTATCAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      18966 59 +     27237 C-TTTTTTTTCTTTTGGCTAATCCTGTACACTTCTTTCAAGTCTGCAAATAATTATCAAG
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2645166 59 -   2996164 C-TTTTTTTTCTTTTGGCTAATCCTGTACACTTCTTTCAAGTCTGCGAATAATTATCAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     396833 59 +    766320 C-TTTTTTTTCTTTTGGCTAATCCTGTACACTTCTTTCAAGTCTGCGAATAATTATCAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28854646 60 -  71996105 CTTTTTTTTTCTTTTGGCTAATCCTGTACACTCCTTTCAAGTCTGCGAATAATTATCAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      17969 59 +    290775 C-TTTTTTCTCTTTTGGCTAATCCTGTACACTTCTTTCAAGTCTGCGAATAATTATCAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2456084 59 -   3067355 -TTTTTTTTTCTTTTGGCTAATCCTGTACACTTCTTTCAAGTCTGCAAATAATTATCAAG
i colAng1.NW_012115566v1   T 7373 C 0
s proCoq1.NW_012152574v1     492970 55 +    730504 T-C----TTCCTTTTGACTAACCCCATACCCTTCTTTCAAGTCTGTGAGCAATTACCAAG
i proCoq1.NW_012152574v1   I 2 I 227
s otoGar3.GL873742          2173101 59 -   2232465 T-CTTTTTTTTTTTTGGCTAACCCCACATTCTTCTTTCAAGTCTGTGAGCAATGATCAAG
i otoGar3.GL873742         I 2 C 0
s dasNov3.JH569098           246289 48 -    254539 ----TCCGTCCTCCTGGCTGCCCCC--------CGCCCCAGTCGCCAGGACGTGCTCAAG
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e canFam3.chr35            26182574 20218 +  26524999 I

a score=1088733.000000
s hg38.chr6_GL000254v2_alt   711538 259 +   4827813 TTCCCACAGTGTGCCTTATTCTACATAGTGCTGGCAATCTGGTCAACTTCCTTTGTATTTCTCCTCTGCTCAGCTTTTCAGTGGATTCTCTTCATTCTCCTTCATTCTCACTGCAGCCCAGACC---CACTTCCTCCCTTCCC--TGAGCTTCCCTTGCCTATCTCCCTCCTCATCACCCAATCCCATTTCCTGCAAGAAGAGGCAATATTATTAATCTGTCTCATCTACCATAACCACCACC------TGGTTTGTGCAATAGCATTTT
s panTro5.chr6             29684988 249 + 175400573 TTCCCACGGTGTGCCTTACTCTACATAGTCCTGGCAATCTGGTCAACTTCCTTTGTATTTCTCCTCTGCTCAGCTTTTCAGTGGATCCT----------CTTCATTCTCACTGCAGCCCAGACC---CACTTCCTCCCTTCCC--TGAGCTTCCCTTGCGTATCTCCCTCCTCATCACCCAATCCCATTTCCTGCAAGAAGAGACAATATTATTAATCTGTCTCATCTACCATAACCACCACC------TGGTTTGTGCAATAGCATTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29915725 259 + 173848474 TTCCCACAGTGTGCCTTATTCTACATAGTCCTGGCAATCTGGTCAACTTCCTTTGTATTTCTCCTCTGCTCAGCTTTTCAGTGGATCCTCTTCATTCTCCTTCATTCTCACTGCAGCCCAGACC---CACTTCCTCCCTTCCC--TGAGCTTCCCTTGCGTATCTCCCTCCTCATCACCCAATCCCATTTCCTGCAAGAAGAGGCAATATTATTAATCTGTCTCATCTACCATAACCACCACC------TGGTTTGTGCAATAGCATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5726081 259 +   6154872 TTCCCACAGTGTGCCTTATTCTACATAGTCCTGGCAATCTGGTCAACTTCCTTTGTATTTCTCCTCTGCTCAGCTTTTCAGTGGATCCTCTTCATTCTCCTTCACTCTCACTGCAGCCCAGACC---CACTTCCTCCCTTCCC--TGAGCTTCCCTTGCCTATCTCCCTCCTCATCACCCAATCCCATTTCCTGCAAGAAGAGGCAATATTATTAATCTGTCTCATCTACCATAACCACCACC------TGGTTTGTGCAATAGCATTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      19025 259 +     27237 TTCCCACCGTGTGCCTTATTCTACATAGTCCTCACAATCTGGTCAACTTCCTTTGTATTTCTCCTCTGATCAGCTTCTCAGTGGATCCTCTTCATTCTCCTTCACTCTCGCTGCAGCCCAGACT---CACTTCCTCCCTTCCC--TGAGCTTCTCTTGCCTGTCTCCCTCCTCACCACCCAATCCCATTTCCCGCAAGGAGAGGCATTATTATTAATCTGTCTCATCTACCATAACCTCCACC------TGGTTTGTGCAATAGCATTTT
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2645225 259 -   2996164 TTCCCACCGTGTGCCTTATTCTACATAGTCCTCACAATCTGGTCAACTTCCTTTGTATTTCTCCTCTGATCAGCTTCTCAGTGGATCCTCTTCATTCTCCTTCACTCTCGCTGCAGCCCAGACT---CACTTCCTCCCTTCCC--TGAGCTTCTCTTGCCTGTCTCCCTCCTCACCACCCAATCCCATTTCCCGCAAGGAGAGGCATTATTATTAATCTGTCTCATCTACCATAACCTCCACC------TGGTTTCTGCAATAGCATTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     396892 259 +    766320 TTCCCACCGTGTGCCTTATTCTACATAGTCCTCACAATCTGGTCAACTTCCTTTGTATTTCTCCTCTGATCAGCTTCTCAGTGGATCCTCTTCATTCTCCTTCACTCTCGCTGCAGCCCAGACT---CACTTCCTCCCTTCCC--TGAGCTTCTCTTGCCTGTCTCCCTCCTCACCACCCAATCCCATTTCCCGCAAGGAGAGGCATTATTATTAATCTGTCTCATCTACCATAACCACCACC------TGGTTTGTGCAATAGCATTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28854706 259 -  71996105 TTCCCACCGTGTGCCTTATTCTACATAGTCCTCACAATCTGGTCAACTTCCTTTGTATTTCTCCTCTGATCAGCTTCTCAGTGGATCCTCTTCATTCTCCTTCACTCTCGCTGCAGCCCAGACT---CACTTCCTCCCTTCCC--TGAGCTGCTCTTGCCTGTCTCCCTCCTCACCACCCAATCCCATTTCCCGCAAGGAGAGGCATTATTATTAATCTATCTCATCTACCATAACCACCACC------TGGTTTGTGCAATAGCATTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      18028 259 +    290775 TTCCCACCGTGTGCCTTATTCTACATAGTCCTCACAATCTGGTCAACTTCCTTTGTATTTCTCCTCTGATCAGCTTCTCAGTGGATCCTCTTCATTCTCCTTCACTCTCACTGCAGCCCAGACC---CACTTCCTCCCTTCCC--TGAGCTTCTCTTGCCTGTCTCCTTCCTCACCACCCAATCCCATTTCCCGCAAGCAGAGGCATTATTATTAATCTGTCTCATCTACCATAACCACCACC------TGGTTTGTGCAATAGCATTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2456143 258 -   3067355 TTCCCACCGTGTGCCTTATTCTACATAGTCCTCACAATCTGGTCAACTTCCTTTGTA-TTCTCCTCTGATCAGCTTCTCAGTGGATCCTCTTCATTCTCCTTCACTCTCACTGCAGCCCAGACC---CACTTCCTCCCTTCCC--TGAGCTTCTCTTGCCTGTCTCCCTCCTCACCACCCAATCCCATTTCCCTCAAGGAGAGGCATTATTATTAATCTGTCTCATCTACCATAACCACCACT------TGGTTTGTGCAATAGCATTTG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873742          2173160 217 -   2232465 GTCCCAC-ATGTTCCCTATTCTAAATATTCCTCAAGATCCGGTAAACTCCCTTTGTCTTCCTCCTCCACTCAGCATCTTA----ATCTTCTTCATCCTCCCTCACTCTCACCCAACCCCCCACCATTTCCATCCTCCCTCCCCCATGAACCTCCCTCGACTGTCT--------------------CATACCCTGCTGGAAAAGGCAATATTATCAATCTGCCTCATCAACCATAGCCACTTC----------------------------
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           246337 186 -    254539 TCCCCGCAG-------------GCTCGGGTCTAGCGA-------------------------CCGCTCAGCAGCTCTTCC----ATCTTCCTCCTCCTC--TCACTCTCA-------CCAGACC---CACCTCCTC---TCGC--GG---------------TCTCCCTCCTCAGCACCCACCACGCCGCCCTGCACGGATCCGCGGTGTT----------TGCATCCGCCGTTACCCCCACCGCCCCACCGCAGGTGGAACAGCGTGTC
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     493025 227 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I

a score=494255.000000
s hg38.chr6_GL000254v2_alt   711797  92 +   4827813 --------CTGGATGTTTCCTCTCCTGGCAGCCAGGACTGACAATGTCACCTGCCAGGGGCCTGGAAAGCCAAGCCA--------------CAACCTTCTTAACCAATTAGAGG
s panTro5.chr6             29685237  92 + 175400573 --------CTGGATGTTTCCTCTCCTGGCAGCCAGGACTGACAATGTCACCTGCCAGGGGCCTGGAAAGCCAAGCCA--------------CAACCTTCTTAGCCAATTAGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29915984  92 + 173848474 --------CTGGATGTTTCCTTTCCTGGCAGCCAGGACTGACAATGTCACCTGCCAGGGGCCTGGAAAGCCAAGCCA--------------CAACCTTCTTAGCCAATTAGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5726340  92 +   6154872 --------CTGGATTTTTCCTCTCCTGGCAGCCAGGACTGACAATGTCACCTGCCAGGAGCCTGGAAAGCCAAGCCA--------------CAACCTTCTTAGCCAATTAGAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      19284  92 +     27237 --------CTAGATGTTTCCTCTCCTGGCAGCCAAGACTGACAATGTCACCTGCCAGGGGCCTGGAAAGCCAAGCCA--------------CAACCTTCTTAGCCAATTAGAGG
i macFas5.chrUn_KE146120   C 0 I 1
s macNem1.NW_012011356v1    2645484  92 -   2996164 --------CTAGATGTTTCCTCTCCTGGCAGCCAAGACTGACAATGTCACCTGCCAGGGGCCTGGAAAGCCAAGCCA--------------CAACCTTCTTAGCCAATTAGAGG
i macNem1.NW_012011356v1   C 0 N 0
s cerAty1.NW_012002711v1     397151  92 +    766320 --------CTAGATGTTTCCTCTCCTGGCAGCCAAGACTGACAATGTCACCTGCCAGGGGCCTGGAAAGCCAAGCCA--------------CAACCTTCTTAGCCAATTAGAGG
i cerAty1.NW_012002711v1   C 0 N 0
s chlSab2.chr17            28854965  92 -  71996105 --------CTAGATGTTTCCTCTCCTAGCAGCCAAGACTGACAATGTCACCTGCCAGGGGCCTGGAAAGCCAAGCCA--------------CAACCTTCTTAGCCAATTAGAGG
i chlSab2.chr17            C 0 N 0
s manLeu1.NW_012099233v1      18287  92 +    290775 --------CTAGATGTTTCCTCTCCTGGCAGCCAAGACTGACAATGTCACCTGCCAGGGGCCTGGAAAGCCAAGCCA--------------CAACCTTCTTAGCCAATTAGAGG
i manLeu1.NW_012099233v1   C 0 N 0
s colAng1.NW_012115566v1    2456401  92 -   3067355 --------CTAGATGTTTCCTCTCCTGGCAGCCAAGACTGACAATGTCACCTGCCAGGGGCCTGGAAAGCCAAGCCA--------------CAACCTTCTTAGCCAATTAGAGG
i colAng1.NW_012115566v1   C 0 N 0
s proCoq1.NW_012152574v1     493252  91 +    730504 --------CTGGATGTTTCCTCTCCCAGCAGCTGGGACTGACAATGTCACTGGCCAGGGGGCTGGGAAACCAA-CCA--------------TGCCCTTCTTAGCTGATTAGAAG
i proCoq1.NW_012152574v1   I 227 C 0
s otoGar3.GL873742          2173377  72 -   2232465 --------CTGGATGCTTCCTCTTCCAGAAGCATGGACTGATGATGTCACCTGCTAGGAGTCTGGAAAGCCA----------------------------------ATTAGACG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           246523 104 -    254539 CTGACTTGCCAGGGGTCCCC-------ACGACCCGGCCCGGCAAGGTCACCTGCCCGGGGC---AGAGGCCAGGGCACGGCCTGCTCAGAGCAGCCTTCACAGGCAGCTGGAGG
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e canFam3.chr35            26182574 20218 +  26524999 I

a score=15971.000000
s hg38.chr6_GL000254v2_alt   711889 15 +   4827813 CACTGCAGAGAAGCA
s panTro5.chr6             29685329 15 + 175400573 CACTGCAGAGAAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29916076 15 + 173848474 CACTGCAGAGAAGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5726432 15 +   6154872 CACTGCAGAGAAGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     493343 15 +    730504 CACTGCAGAGGAGCA
i proCoq1.NW_012152574v1   C 0 I 277
s otoGar3.GL873742          2173449 15 -   2232465 CAATGCTGAAAAGCA
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           246627 13 -    254539 -CTCGTAAGGAAGA-
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376  1 +     27237 I

a score=7555.000000
s hg38.chr6_GL000254v2_alt   711904 6 +   4827813 GCAGGA
s panTro5.chr6             29685344 6 + 175400573 GCAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29916091 6 + 173848474 GCAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5726447 6 +   6154872 GCAGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742          2173464 6 -   2232465 ACAGGG
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           246640 6 -    254539 GCAGGG
i dasNov3.JH569098         C 0 I 59
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     493358 277 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376 1 +     27237 I

a score=6000.000000
s hg38.chr6_GL000254v2_alt   711910 7 +   4827813 GTCAGGG
s panTro5.chr6             29685350 7 + 175400573 GTCAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29916097 7 + 173848474 GTCAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5726453 7 +   6154872 GTCAGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742          2173470 7 -   2232465 GGCAGGG
i otoGar3.GL873742         C 0 I 65
e mm10.chr17               57782825 84004 -  94987271 I
e dasNov3.JH569098           246646 59 -    254539 I
e proCoq1.NW_012152574v1     493358 277 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376 1 +     27237 I

a score=57432.000000
s hg38.chr6_GL000254v2_alt   711917 107 +   4827813 CACTTGCACCCAAGAATGATAGATATATTTATTCACCACATATGTATGGATATAGTTAGAGAAACAAGCCTCAAGGCACAACGATTGACTGAGGTTAGACATTCGGC
s panTro5.chr6             29685357 107 + 175400573 CACTTGCACCCAAGAATGATGGATATATTTATTCACCACATATGTATGGATATAGTTAGAGAAACAAGCCTCAAGGCACAACGATTGACTGAGGTTAGACATTCGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29916104 107 + 173848474 CACTTGCACCCAAGAATGATGGATATATTTATTCACCACATATGTATGGATATAGTTAGAGAAACAAGCCTCAAGGCACAACGATTGACTGAGGTTAGACATTCGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5726460 107 +   6154872 TACTTGCACCCAAGAATGATGGATGTATTTATTCACCATATGTGTATAGATATAGTTAGAGAAACAAGCCTCAAGGCACAGCGATTGACTGAGGTTAGACATTCGGA
i gorGor5.CYUI01015250v1   C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e dasNov3.JH569098           246646  59 -    254539 I
e proCoq1.NW_012152574v1     493358 277 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e otoGar3.GL873742          2173477  65 -   2232465 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=63464.000000
s hg38.chr6_GL000254v2_alt   712024  92 +   4827813 CACTTGAGAGAATGAGGAGGTGGAAGCACAGAAGTTAAAAGTCATCTCTCTCCC-----------------ATTTGCTTCAACCTCAGCATGCCTGAAAAAAACATGGT
s panTro5.chr6             29685464  92 + 175400573 CACTTGAGAGAATGAGGAGGTGGAAGCACAGAAGTTAAAAGTCATCTCTCTCCC-----------------ATTTGCTTCAACCTCAGCATGCCTGAAAAAAACATGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29916211  92 + 173848474 CACTTGAGAGAATGAGGAGGTGGAAGCACAGAAGTTAAAAGTCATCTCTCTCCC-----------------ATTTGCTTCAACCTCAGCATGCCTGAAAAAAACATGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5726567  92 +   6154872 CACTTGAGAGAATGAGGAGGTGGAAGAACAGAAGTTAAAAGTCATCTCTCTCCC-----------------GTTTGCTTCAACCTCAGCATTCCTGAAAAAAACACGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742          2173542 100 -   2232465 CACATG-GGGGATGAGGAGGGGGAA--ACAAAAGCTACA--TCACCTCTCTCCCCGTTTTTGGAGAACCCAGGTTGCTTCAGTCTCAGCATGCCT----AGAATGTGAC
i otoGar3.GL873742         I 65 C 0
s dasNov3.JH569098           246705  67 -    254539 CACATGAGGGAGTGAGGAGGGGGAG-----TGGGTGAAAAGTCACCTCTGGCCA-----------------------TTCA----CAGGGCGCCTGGGG----------
i dasNov3.JH569098         I 59 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     493358 277 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=218095.000000
s hg38.chr6_GL000254v2_alt   712116 178 +   4827813 TGATAATATACCAGTCAGTG--ACCAAGCCCTAATGAAATGACTGACTTACCAATACTGACTTCTCAGGAGGCTGATTTAGAGCCAAAGTAACTGCTG---AG---TTCTGAATAAGCAGCACACCTGGTCTGCATAATAAGATCCATTTTGCAATCACCCTCTTCAGAAAGCCAAATAATAGGTC
s panTro5.chr6             29685556 178 + 175400573 TGATAATATACCAGTCAGTG--ACCAAGCCCTAATGAAATGACTGACTTACCAATACTGACTTCTCAAGAGGCTGATTTAGAGCCAAAGTGACTGCTG---AG---TTCTGAATAAGCAGCACACCTGGTCTGCATAATAAGATCCATTTTGCAATCACCCTCTTCAGAAAGCCAAATAATAGGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29916303 178 + 173848474 TGATAATATACCAGTCAGTG--ACCAAGCCCTAATGAAATGACTGACTTACCAATACTGACTTCTCAGGAGGCTGATTTAGAGCCAAAGTGACTGCTG---AG---TTCTGAATAAGCAGCACACCTGGTCTGCATAATAAGATCCATTTTGCAATCACCCTCTTCAGAAAGCCAAATAATAGGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5726659 181 +   6154872 TGATAATATACCAGTCAGTG--ACCAAGCCCTAATGAAATGACTGACTTACCAGTACTGACTTCTCAAGAGGCTGATTTAGAGCCAAAGTGACTGCTG---AGTTCTTCTGAATAAGCAGCACACCTGGTCTGCATAATAAGATCCATTTTGCAATCACCCTCTTCAGAAAGCCAAATAATAGGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     493635 178 +    730504 TGATAATAAACCAGTCAGTG--ACCAGGTCCTAGTGAAGTGACAGACTTACCAAAATTGACTTCACAAGAGGCTGATTTAGAGCCAAAATGACAATGG---AG---TTCTGAATAGACAGCACACCTGGTCTGAGCAGTAGGATCAGTTTTGCAATCACCCTCTTCAGGAAACCAAATAACAGGTC
i proCoq1.NW_012152574v1   I 277 C 0
s otoGar3.GL873742          2173642 179 -   2232465 TAATAACAAAGTGGTCAGTG--ACCAGGTCC-ACAGAAGTGCCTGACATACCAAAACTGACTTCACAA-AAGCTGATTTAGAGCCAAAGTAACAACAGACTAC---TTCTGAATAGACAGAACATCTGGTCTAAGTAATAGAATCAGTTTTGCAATCACTGTCTTCAGGAAACCAAATAATAAGTC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           246772 162 -    254539 TGGC-----GCCAGCCTGTGTTACTAGGCGCTGAAGAAGGGACTGACTTGCTAGAGCTGACTTCACGAGGGGCTGGCCTAGAGCCGGGAT----GCTG---ACCTCTACTGAGTGGACATCAAACC-GGCCGGAGCAGTGGGACA-----------CACCTTCTTCAGGAAACGGATTAAGAGGCC
i dasNov3.JH569098         C 0 I 722
e mm10.chr17               57782825 84004 -  94987271 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=104907.000000
s hg38.chr6_GL000254v2_alt   712294 84 +   4827813 AAAAGGTGGTTTAGAACCCAAGCAGCGGAAATAACACAGTTGAGGACTCTGTCGACCATAGGCACCCTGATGGACCTAAATAAA
s panTro5.chr6             29685734 84 + 175400573 AAAAGGTGGTTTAGAACCCAAGCAGCAGAAATAACACAGTTGAGGACTCTGTCAACCATAGGCACCTTGATGGACCTAAATAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29916481 84 + 173848474 AAAAGGTGGTTTAGAACCCAAGCAGCGGAAATAACACAGTTGAGGACTCTGTCGACCGTAGGCACCTTGATGGACCTAAATAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5726840 84 +   6154872 AAAACGTGGTTTAGAACCCAAGCAGCAAAAAGAACACAGTTGAGGACTCTGTCGACCATAGGCACCTTGATGGACCTAAACAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     493813 83 +    730504 AAAAGGTTGTTTAGAACCCAAACAGT-AAAAGAACACAATTAAGGGCTCAGTCTACCTTAGGCCTCTTGATGAACCTAAATAAA
i proCoq1.NW_012152574v1   C 0 I 4
s otoGar3.GL873742          2173821 79 -   2232465 AAAAGGTACGTTAAAAACAGAG-----AAAAGAACACAATTAAGGGCTCTGTCTACCTAAGGCCTCTTGATGAACCTAAACAAA
i otoGar3.GL873742         C 0 I 205
s dasNov3.JH569098           247656 78 -    254539 AAAACATTGTTTAGATCCCAAACAGC--AGAGAACACA----AGGGCTCTATCTACCTTGGACCACATAATGGACCTAAACAAA
i dasNov3.JH569098         I 722 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376  1 +     27237 I

a score=57856.000000
s hg38.chr6_GL000254v2_alt   712378  67 +   4827813 ----TTACTC-------------------------------------------------------AACTTTTCACGAGAATATTTT---ACCTAATAACTGGAACTTATCATCCAGAACAATGTTTTCT
s panTro5.chr6             29685818  67 + 175400573 ----TTACTC-------------------------------------------------------AACTTTTCACGAGAATATTTT---ACCTAATAACTGGAACTTATCATCCAGAACAATGTTTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29916565  67 + 173848474 ----TTACTC-------------------------------------------------------AACTTTTCACGAGAATATTTT---ACCTAATAACTGGAACTTATCATCCAGAACAATGTTTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5726924  67 +   6154872 ----TTACTC-------------------------------------------------------AACTTTTCACAAGAATATTTT---ACCTAATAACTGGAACTTATCATCCAGAACAATGTTTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     493900  68 +    730504 ----TCACT--------------------------------------------------------CATTTTCCACAACAAGAATATT-AACCTAAGAACGGGAACTTATCTTCCAGACTTGTGTTTTCT
i proCoq1.NW_012152574v1   I 4 I 124
s otoGar3.GL873742          2174105 124 -   2232465 ----ttgctcaggatggtctcaaacttctgagctcaaggaatctgcctacctcagcctcccaaaACATTTTCCACAACAACAATATG-AACCTAAGGACTGGAACTTATTTTCCAAACTACTATTCTCT
i otoGar3.GL873742         I 205 C 0
s dasNov3.JH569098           247734  70 -    254539 CAAATCACT--------------------------------------------------------CACTTTCCACAAGAATACTCGGTAGCCTAAGGACTGGAGCTGTTCATCCA---CAGGGTTCTCC
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=107839.000000
s hg38.chr6_GL000254v2_alt   712445 130 +   4827813 GCCTCTTTGTTTTTCAGTTCATGATATTCCTGTGGACTGGCTTTACTCCTAATTTCCGACCCCAATAAGATCCTGGTCTAGTTCTTGGTATCTAGACCTAATTCCCCATTTGCATAAAAGAATACAAATG
s panTro5.chr6             29685885 130 + 175400573 GCCTCTTTGTTTTTCAGTTCATGATATTCCTGTGGACTGGCTTTACTCCTAATTTCCGACCCCAATAAGATCCTGGTCTAGTTCTTGGTATCTAGACCTAATTCCCCATTTGTATAAAAGAATACAAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29916632 130 + 173848474 GCCTCTTTGTTTTTCAGTTCATGATATTCCTGTGGACTGGCTTTACTCCTAATTTCCGACCCCAATAAGATCCTGGTCTAGTTCTTGGTATCCAGACCTAATTCCCCATTTGCATAAAAGAATACAAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5726991 130 +   6154872 GCCTCTTTGTTTTTCAGTTCATGATATTCCTGTGGACTGGCTTTACTCCTAATTTCCGACCCCAATAATATCCTGGTCTAGTTCTTGGTATCTAGACCTTATTCCCCATTTGCATAAAAGAATACAAATG
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742          2174229 128 -   2232465 --CCTTTTTTTTTTCTGTTGATGACATACCTGGGAGCTTTCTTTACTCTTTATCTCCCACCCCAACCTGCTACTGATATAGCCTTTGCTATCTGGGCCTTACTCCCCATTCACATAAATGAAAATAGAAC
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           247804 116 -    254539 ----ACCTTTTTTTTAATCGATGACATTCTCATGAGCT-TCTCCACTCC-----TCCCACCCCAA----ACGCTGGTCCAGCCCTTGCAAGCTCGGCCTTACTCCCTGTTTGTACAAAGACATATAGGAC
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     493968 124 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=718930.000000
s hg38.chr6_GL000254v2_alt   712575 596 +   4827813 ATAAACATAGAAACCCTGACCATCCTTGACTCCAAGGGT----------------AAAAAT-------ACTGCCCTAGGCAATCATGATGCCTCTTATTTACTG-CCTTTCAAA----TAGAAACTTTCTAAAGCAGCCATTGGGAAATAGTTCAT-----TTTTGCAAT-GGACCACAGATACCTATACACATTGGGC-TTATCATTTTGATCTTTATTCAGCTCCTAAAA-ATAGTCAATTTGAAAAATGGGGTTTGCATTGACAGTTTTATATTATTGATGCCAATTTGGAATTTTATACTTGATAATATTTATTTGTTGAATGAATTTGAACGAGTGGTAGAAGACTCTTCTGGCTGGAGCACTTTTAA-GTCTTGCACTAGCATGGGTCTGGAAATGAACTGAAGGAGGACTAGAGATAAGTACAGGGGTGCGTCCCAATTGTGAATGAGAATGCAGGCCATATACTCTTTGGAGAATCACCATTATGGGCCCTCTGGCAGTATAAATGAGGCCATTGTAGAGTTATTCTTCTGTATTATCCAAAGAGAGGACCTAAAACAA-----ATTAGTGAAATAAATACTGTAGGATTTCTGCTAGATGATGAGGCTTTTAATTCTTCCTGTTTCTGG
s panTro5.chr6             29686015 596 + 175400573 ATAAACATAGAAACCCTGACCATCCTTGACTCCAAGGGT----------------AAAAAT-------ACTGCCCTAGGCAATCATGATGCCTCTTATTTACTG-CCTTTCAAA----TGGAAACTTTCTAAAGCAGCCATTGGGAAATAGTTCAT-----TTTTGCAAT-GGACCACAGATACCTATACACATTGGGC-TTATCATTTTGATCTTTATTCAGCTCCTAAAA-ATAGTCAATTTGAAAAATGGGGTTTGCATTGACAGTTTTATATTGTTGATGCCAATTTGGAATTTTATACTTGATAATATTTATTTGTTGAATGAATTTGAACGAGTGGTAGAAGACTCTTCTGGCTGGAGCACTTTTAA-GTCTTGCACTAGCATGGGTCTGGAAATGAACTGAAGGAGGACTAGAGATAAGTACAGGGGTGTGTCCCAATTGTGAATGAGAATGCAGGCCATATACTCTTTGGAGAATCACCATTATGGGCCCTCTGGCAGTGTAAATGAGGCCATTGTAGAGTTATTCTTCTGTATTATCCAAAGAGAGGACCTAAAACAA-----ATTAGTGAAATAAATACTGTAGGATTTCTGCTAGATGATGAGGCTTTTAATTCTTCCTGTTCCTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29916762 596 + 173848474 ATAAACATAGAAACCCTGACCATCCTTGACTCCAAGGGT----------------AAAAAT-------ACTGCCCTAGGCAATCATGATGCCTCTTATTTACTG-CCTTTCAAA----TGGAAACTTTCTAAAGCAGTCATTGGGAAATAGTTCAT-----TTTTGCAAT-GGACCACAGATACCTATACACATTGGGC-TTATCATTTTGATCTTTATTCAGCTCCTAAAA-ATAGTCAATTTGAAAAATGGGGTTTGCATTGACAGTTTTATATTATTGATGCCAATCTGGAATTTTATACTTGATAATATTTATTTGTTGAATAAATTTGAACGAGTGGTAGAAGACTCTTCTGGCTGGAGCACTTTTAA-GTCTTGCACTAGCATGGGTCTGGAAATGAACTGAAGGAGGACTAGAGATAAGTACAGGGGTGCATCCCAATTGTGAATGAGAATGCAGGCCATATACTCTTTGGAGAATCACCATTATGGGCCCTCTGGCAGTGTAAATGAGGCCATTGTAGAGTTATTCTTCTGTATTATCCAAAGAGAGGACCTAAAACAA-----ATTAGTGAAATAAATACTGTAGGATTTCTGCTAGATGATGAGGCTTTTAATTCTTCCTGTTTCTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5727121 596 +   6154872 ATAAACATAGAAACCCTAACCATCCTTGACTCCAAGGGT----------------AAAAAT-------ACTGCCCTAGGCAATCATGATGCCTCTTATTTACTG-CCTTTCAAA----TGGAAACTTTCTGAAGCAGCCATTGGGAAATAGTTCAT-----TTTTGCAAT-GGACCACAGATACCTATACACATTGGGC-TTATCATTTTGATCTTTATTCAGCTCCTAAAA-ATAGTCAATTTGAAAAATGGGGTTTGCATTGACAGTTTTATATTATTGATGCCAATTTGGAATTTTATACTTGATAATATTTATTTGTTGAATGAATTTGAATGAGTGGTAGAAGACTCTTCTGGCTGGAGCACTTTTAA-GTCTTGCACTAGCATGGGTCTGGAAATGAACTGAAGGAGGACTAGAGATAAGTACAGGGGTGCGCCCCAATTGTGAATGAGAATGCAGGCCATATACTCTTTGGAGAATCACCATTATGGGCACTCTGGCAGTGTAAATGAGGCCATTGTAGAGTTATTCTTCTGTATTATCCAAAGAGAGGACCTAAAACAA-----ATTAGTGAAATAAATACTGTAGGATTTCTGCTAGATGATGAGGCTTTTAATTCTTCCTGTTTCTGG
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     494092 605 +    730504 ATAGCCCTGCAAACCCTAAACATCCTTGACTCTAAAGGT-----------------AAAAA-------ATTGTACTAGGCAGTCATGATACCTCTTCTTTACTG-CCCTGCAATAGTTGGGAAACTTTCTAAAGCAGCCACCGGGAAATTATTTATAGAATTTTTGCAGT-GGAACTCAGACACATATACACATCAGGCATTTGCATTTTAATCTTCATTCAGCTCCCAAAA-ATAAGCAATTTGAGAAATAGGGTTTGCACTGACAGTTTTATATTATCGATGCCAAATAGGAATTTTGTACTCAGTAA----CATGTGTTGAACAGAATTGAACCAGTGGTAGAAGACTCTTCTGGCTGGAGGACTTGTAAGGCCTTGCACCAGCATGAGTTTGAAGATGAAATGCAGGAGGCCTAGAGATAAATAT-GGGGTTCACCCCAAGTGGGAATGAGTACGCAGACCACATACCATTCAGAGAATCACCATTATGGATGCTCTGGCAGTG-GGGTGAGAGCGTTGTAGAGTTATTCTCCTGTATTATGCAAAGAGAGAACCTAAAACAGAAATTATTATTGAAATAAAGATTGTAGGATTTCTGCTACATAATGAGGCTTGTAAGTCTTCCTATTTCTAG
i proCoq1.NW_012152574v1   I 124 C 0
s otoGar3.GL873742          2174357 590 -   2232465 ATAGCCCTGCAAACTCTAAACATTCTTGACTCCAAATGTaaaaaaaaaaaaaaaaaaaaaa-------aTTGTACTAGGCAATCATGATACCTCTTCTTTACTA-CCATGCAACATTTAGGAAACTTTCTATAGCAATCATT---ATATTAGTCATAGAACTTTTTCA------------------ATACACGTTGGTCATTGTCATTTTAATGTCCATTCAGCTTCCAAAC-ACATGTAATTTGAGAAATGGAGTTTACATAGATGGTTTTATATCATTGATGCCACATAGGAATTTTGTGCTCAGTAA----CATTTGTTAGACAGAATTGAATGAATGGAGGAAGACTCTTCTGGGTGGAGGACTTGTAAGGCTTTGCACCAGCATAAACTTGGAGACAAA---------GCCTTGAGATTAATAC-AAGATTCACCCCAAGTGGGAATGAGTATGCAGACCATATACTGTTCAGACAATCACCATTATGGATATCCTGGTAGTG-GGATGAAGGCATTGTAGAGTTACTCTCCTGCATTATGGAAAGAGAGAACCTAAAACAGAAATTATTATTGAAATAAAGACT---AATTTTCTTCTACATAGTAAGGCTTTTAAGTCTTCCTGTTCCCAA
i otoGar3.GL873742         C 0 I 653
s dasNov3.JH569098           247920 577 -    254539 ATAGACATGCAAACCCTAAATATCCTTTACTCAAAAGTT----------------AAAAATTACAAAAACTGTCATAGGAAATCATGATGCCTCTTCAGTGCTGCCCCCGCAGTAGTTGGGAAACTTTCTAAATCAGTGACTGGATAATCATTCATAGAATTTTTCCAGTGGGACCACAAATAGATACGCACATGGAGCTTTATC--TCTAATCTTTCTTCAGCTCCCAAAATACAAACAGCTTGAAAAAAGATGTTCACATTGGAAGCTTTAAATTATCAGAGCCAAACAAGAAGTTTATTGTCAGCCA----GGTTTGTTGGACAGAATTGAGCCAGAGGCTGAAGGCTCTTCTGGCTGGA--ACTTGAAAGACCTTGCACCAGAATGGGTGTAGAGACAAG-TGAAGGAGGCCTAGAGACAAA-----------GCCCCAAATGGCA-----------------------TTTGGAGAATCACCACTACGG-TACTCTGGGAGTG-CGGTGGGGCCACTGTGGGGTGGTTCTCCTGCACCATGCACAGATAGAACCTTAAATGGAAATTCTTATTGAAATAGAGGTTGTAGGATTTCTGTTCCATGGCCAGGCTCTTAGGTCTCCCCGTTTCTAG
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=211593.000000
s hg38.chr6_GL000254v2_alt   713171 199 +   4827813 GATGGCCTGGCTGGGCCTCCTTAGGAACTCAGCTCATTCCCCATTCC--TCCTTGACACTGGATATGCATTCTTTGCATTCCTTGGCTTTCTCTCTG-GTGTTCTATAGAAAGTAAATGAGTCACAGTTCCTTCAGTTCTTTCTTTTAGCCAGTCTATAGCACTCTACTGGTCATCAAAAAAGATCCAAAAGTGATCAACAT
s panTro5.chr6             29686611 199 + 175400573 GATGGCCTGGCTGGGCCTCCTTAGGAACTCAGCTCATTCCCCATTCC--TCCTTGACATTGGATATGCATTCTTCGCATTCCTTGGCTTTCTCTCTG-GTGTTCTATAGAAAGTAAATGAGTCACAGTTCCTTCAGTTCTTTCTTTTAGCCAGTCTATAGCACTCTACTGGTCATCAAAAAAGATCCAAAAGTGATCAACAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29917358 198 + 173848474 GATGGCCTGGCTGGGCCTCCTTAGGAACTCAGCTCATTTCCCATTCC--TCCTTGACATTGGATATGCATTCTTCGCATTCCTTGGCTTTCTCTCTG-GTGTTCTATAGAAAGTAAATGAGTCACAGTTCCTTCAGTTCTTTCTTTTAGCCAGTCTATAGCACTCTACTGGTCATC-AAAAAGATCCAAAAATGATCAACAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5727717 199 +   6154872 GATGGCCTGGCTGGGCCTCCTTAGGAACTCAGCTCATTCCCCATTCC--TCCTTGACATTGGATATGCATTCTTCGCATTCCTTGGCTTTCTCTCTG-GTGTTCTATAGAAAGTAAATGAGTCACAGTTCCTTCAGTTCTTTCTTTTAGCCAGTCTATAGCAATCTACTGGTCATCAAAAAAGATCCAAAAGTGATCAACAT
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     494697 194 +    730504 GATGGCCTGACTAGGTCTCCTCAGTGACTTAGCTCTTTCTCAGTTCC--TCCTCAACATTGGATATGCTTTCTTTGCATTCCTTGGCTTTCTCA------GTTCTACAGGAAGTAAATCAATCATAATTCCTTTAGTTCTTTCTTTCAGCCAGTCTGCAGCACTCTATCAGTACTCAAATGAAACCAAAAAGTGATCAACAT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873742          2175600 200 -   2232465 GATGGACAGATTGGTTCTCCTCAGGTACCTGGCTCTTTCTCAGTCCCCGCCCCCAACATTGGATATGCTTTCTTTGCATTCTCAGGCTTCCTCAGTG-GTGTTCTATAGGAAGCAAACCAATCATAATT-CTTTAGTTCTTTCTTTCAACCGGTCTGAAGAATCCCATCAGTACTCAAAAGAAATCAAAAAGTGATCAACAT
i otoGar3.GL873742         I 653 C 0
s dasNov3.JH569098           248497 107 -    254539 ----GGTTGGCT--------------ACCTGGTTCTCTCCTAGATCT--GCCCCAGCATTCGCTGTGCTTTCTTTGCATTCCTTGACTTTCTCACTGTGTTTTCCACAGGAGGTGAGCCAGTCACAG---------------------------------------------------------------------------
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=26566.000000
s hg38.chr6_GL000254v2_alt   713370 71 +   4827813 GACCCTTTCttttttttttttttttttttttttttgagaaggagtctagctctgtcgcccaggctggagta
s panTro5.chr6             29686810 66 + 175400573 GACCCtttc-----tttttttttttttttttttttgagacggagtctagctctgtcacccaggctggagta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29917556 65 + 173848474 GACCCtttc-----tttttttttttttttttttgt-agacggagtctagctctgtcgcccaggctggagta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5727916 66 +   6154872 GACCCtttc----ttttttttttttttttttttttgagacagagtctagctctgtca-ccatgctggagtg
i gorGor5.CYUI01015250v1   C 0 C 0
s dasNov3.JH569098           248604 36 -    254539 ---------------TTCTCTTTAGTTCCTTCCTCCAG--------------------CCAGTCTGCAGCA
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     494891  0 +    730504 C
e canFam3.chr35            26182574 20218 +  26524999 I
e otoGar3.GL873742          2175800  0 -   2232465 C
e macFas5.chrUn_KE146120      19376  1 +     27237 I

a score=87263.000000
s hg38.chr6_GL000254v2_alt   713441 161 +   4827813 cagtggtgtgatctcggctcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagttggaactacaggtgtgcgccaccacacccagctaatttttgtatttttagtaaagatggggtttcaccaagttggccaggatg
s panTro5.chr6             29686876 161 + 175400573 cagtggtgtgatctcagctcactgcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcccaagtagttggaactacaggtgtgtgccaccacacccagctaatttttgtatttttagtaaagatggggtttcaccaagttggccaggatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29917621 161 + 173848474 cagtggtgtgatctcggctcactgcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcccaagtagttggaactacaggtgtgtgccaccacacccagctaatttttgtatttttagtaaagatggggtttcaccaagttggccaggatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5727982 159 +   6154872 caatggtgtga--tcagcttactgcaacctccgcctcccaggttcaagcgaatctcctgcctcagcctcccaagtagttggaactacaggtgtgcgccaccacacccagctaatttttgtatttttagtaaagatggggtttcaccaagttggccaggatg
i gorGor5.CYUI01015250v1   C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e dasNov3.JH569098           248640   0 -    254539 C
e proCoq1.NW_012152574v1     494891   0 +    730504 C
e canFam3.chr35            26182574 20218 +  26524999 I
e otoGar3.GL873742          2175800   0 -   2232465 C
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=45226.000000
s hg38.chr6_GL000254v2_alt   713602 87 +   4827813 gtctcgatctcttgacctcatgatctgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccacacccagccACAC
s panTro5.chr6             29687037 87 + 175400573 gtctcgatctcttgacctcatgatctgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaacacacccagccACAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29917782 87 + 173848474 gtctcgatctcttgacctcatgatctgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccacacccagccACAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5728141 87 +   6154872 gtcccgatctcttgacctcatgatctgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccacacccagccACAC
i gorGor5.CYUI01015250v1   C 0 C 0
s dasNov3.JH569098           248640 36 -    254539 GTCTTGTTCT--------------------------------CAAAG----------------GAGACCCAGAACA---AACTGCAT
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     494891  0 +    730504 C
e canFam3.chr35            26182574 20218 +  26524999 I
e otoGar3.GL873742          2175800  0 -   2232465 C
e macFas5.chrUn_KE146120      19376  1 +     27237 I

a score=493128.000000
s hg38.chr6_GL000254v2_alt   713689 437 +   4827813 GACCCT--TTCTAAGGAAGTGAAGATGGCAC--ATGGAGACCAAGTACAGAAAGGACTACTGGGGGTCTTGGATGGCCCTCCAATGCTGTTGTCTCTCCAGTTCCTCTTGGATAATTCTGGTGTCCATG---AATTATTATGTTGCCACATTTGGATGCCCCATAAGGGTCACTTGAGAAAATCATGAAATCTGGGAAAGGAAGGGCAAGTC-ATAGAATCCTGCCACTATAGAATAATGTCTGACAACCAAGTGATACATTCTGTTTAAGTAGG-CACCAAACTGTCGGCAAAAGCCCCATTTTCGAGTTGGCCAGTTCTGGCAATTTTCTGTGTCCATTCTGCATGCCACTCAACTCCTCTAATGAATTCTTATTCCTTTTCAAGCCTTCTGTATTCC---TTCTT---ATCATACTGGACACTTTGACCTCTGGTGTCCTAGAACTCCT
s panTro5.chr6             29687124 437 + 175400573 GACCCT--TTCTAAGGAAGTGAAGATGGCAC--ATGGAGACCAAGTACAGAAAGGACTACTGGGGGTCTTGGATGGCCCTCCAATGCTGTTGTCTCTCCAGTTCCTCTTGGATAATTCTGGTGTCCATG---AATTATTATGTTGCCACATTTGGATGCCCCATAAGGGTCACTTGAGAAAATCATGAAATCTGGGAAAGGAAGGGCAAGTC-ATAGAATCCTGCCACTGTAGAATAATGTCTGACAACCAAGTGATACATTCTGTTTAAGTAGG-CACCAAACTGTTGGCAAAAGCCCTATTTTCGAGTTGGCCAGTTCTGGCAATTTTCTGTGTCCATTCTGCATGCCACTCAACTCCTCTAATGAATTCTTATTCCTTTTCAAGCCTTCTGTATTCC---TTCTT---ATCATACTGGACACTTTGACCTCTAGTGTCCTAGAACTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29917869 437 + 173848474 GACCCT--TTCTAAGGAAGCGAAGATGGCAC--ATGGAGACCAAGTACAGAAAGGACTACTGGGGGTCTTGGATGGCCCTCCAATGCTGTTGTCTCTCCAGTTCCTCTTGGATAATTCTGGTGTCCATG---AATTATTATGTTGCCACATTTGGATGCCCCATAAGGGTCACTTGAGAAAATCATGAAATCTGGGAAAGGAAGGGCAAGTC-ATAGAATCCTGCCACTATAGAATAATGTCTGACAACCAAGTGATACATTCTGTTTAAGTAGG-CACCAAACTGTCGGCAAAAGCCCTATTTTCGAGTTGGCCAGTTCTGGCAATTTTCTGTGTCCATTCTGCATGCCACTCAACTCCTCTAATGAATTCTTATTCCTTTTCAAGCCTTCTGTATTCC---TTCTT---ATCATACTGGACACTTTGACCTCTGGTGTCCTAGAACTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5728228 436 +   6154872 GACCCT--TTCTAAGGAAGCGAAGATGG-AC--ATGGAGACCAAGTACAGAAATGACTACTGGGGGTCTTGGATGGCCCTCCAATGCTGTTGTCTCTCCAGTTCCTCTTGGATAATTCTGGTGTCCATG---AGTTATTATGTTGCCACATTTGGATGCCCCATAAGGGTCACTTGAGAAAATCATGAAATCTGGGAAAGGAAGGGCAAGTC-ATAGAATCCTGCCACTATAGAATAATGTCTGACAACCAAATGATACATTCTGTTTAAGTAGG-CACCAAACTGTTGGCAAAAGCCCCATTTTCGAGTTGGCCAGTTCTGGCAATTTTCTGTGTCCATTCTGCATGCCACTCAACTCCTCTAATGAATTCTTATTCCTTTTCAAGCCTTCTGTATTCC---TTCTT---ATCATACTGGACACTTTGACCTCTGGTGTCCTAGAACTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     494891 441 +    730504 GACCCT--TTCTAAGGGAGCTAGGATGGCAG--ATTGAGAGCAAGAGCAGAAAGGAGTACTTGGGGTCTTGGATGGCTTTCCAATGCTGTTGTCTCTACAGTTCCTCTTAGATAATTCTGGAGGCTACA---AGTTGTTATATTGTCACATTCGGATGTCCTATAAGGATCAGTTGAGAAAAGTACCAAATCTGAGAAAGAAAAGGCAGATCTGTATGAACCTGCCAGTATAGAATAATGTCTGACAACCTACTGATAGGTTCTCCTTCAGTAGACCACTAAACCTCTGGC-AAAGCTCCATCTTCCAACAGGCCTGTTCAGGGAAATTGCTGTGTCCATTCTGAATGTCACTCAACTCTTCTAATGAATTCCTATTCTTCTTCGAGCCTTCTGTATTCCCTGTTCGT---ATCAAACTGGACAATTTGAGATCCGGTATCCTATAACTCCT
i proCoq1.NW_012152574v1   C 0 I 60664
s otoGar3.GL873742          2175800 441 -   2232465 GACTCT--TTCTAAGGGAGCTAGGATGGCAGGAGCTAGGATCAAGAACAGAAAGAAGTACTTGGGGTCTTGGGTTACTCTCCAATCCTACTGTCTCTATAGTTCATCTTAGATAACTCTAGGGCCTATGAGTAGTAGTTCTATAGCCACAATC-AATGCCTCATATGGATCAGGTGAGAAAAGCAACAAATCTGGGAAAGCAAATGCAGATGGGTAAGAACTTGCCAGTACAGAATAATGTCTAACAGGCTAGCCATAGGTTCTCCTGGAGTAGTCCGCTAAACTGATGGG-TGAACCCCATTTTTC--CAGGCCTCTTCCAGAAATTTCCTATGTCTGTTCTGAATGCCACTCAACTCTTCTAATGAATTCCCATTCTTCTTCAAACCTTCTGTATTTTC--TTAGT---ATCATACTGGACACTTTGATATCTGATATCCTAGAATTCCC
i otoGar3.GL873742         C 0 I 22
s dasNov3.JH569098           248676 381 -    254539 GACCTTTCTTCTAGGGGAGCTGGGATGACAG--CTCTAGACCCAGAGCAGAA---------------CTTGGAAGCCTCTTGTGTGCAGGTGTCCCTGCAGTTCCTTTTGCATAATTCTGGG--CCACA---AGCTTTTGTTTCATCCCATTCAGATGCCCCATAT-GCTCAGCGAAGGAAAGCACCAAAGATGGG-AAGGAAAGGCACACCTGGAGGAGCGTGCCAGCACAGGATGAC--------ACCACGAGGCTGATTCTCCTTCAGTGGC-CACTCTGCTCGTGGCCGAAGCCC-ACTTCCCAGCAGGCTTGTCCAG-------------------------GCCAACCATCCTCTCTCATAGAGGCTC--------TCAAGCCTTCTGTGTTCC---TTCTTCAGATCG-GCTGGACATTTGGAGACTGGACATGCCATAACTCCT
i dasNov3.JH569098         C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=197505.000000
s hg38.chr6_GL000254v2_alt   714126 227 +   4827813 -----GCT------------------------------------------------------------------TCCCATGACTTCCATCTCCAATTCCAATAAACACCTTCTTTTTAAAAATTTCCTGATATTACCCAGTAGCTCTCATCCCTATTTCCCTTTGAAGTACTC--ATGTTTTTTATGATCCCTTCTCCCAACACTTTTCTTGCCTTCA-----------ATG------------------------------TATTTTTAATGACTGGTGACCTCTTACCTCTCCTTCTTTTACTTTAACCTCTAACTTCTCCTAATCAATATGCCTTAAA
s panTro5.chr6             29687561 227 + 175400573 -----GCT------------------------------------------------------------------TCCCATGACTTCCATCTCCAATTCCAATAAACACCTTCTTTTTAAAAATTTCCTGATATTACCCAGTAGCTCTCATCCCTATTTCCCTTTGAAGTACTC--ATGTTTTTTATGATCCCTTCTCCCAACACTTTTCTTGCCTTCA-----------AGG------------------------------TATTTTTAATGACTGGTGacctcttacttctccttcttttactttaacctctaacttctCCTAATCAATATGCCTTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29918306 227 + 173848474 -----GCT------------------------------------------------------------------TCCCATGACTTCCATCTCCAATTCCAATAAACACCTTCTTTTTAAAAATTTCCTGATATTACCCAGTAGCTCTCATCCCTATTTCCCTTTGAAGTACTC--ATGTTTTTTATGATCCCTTCTCCCAACACTTTTCTTGCCTTCA-----------ATG------------------------------TATTTTTAATGACTGGTGACCTCTTACCTCTCCTTCTTTTACTTTAACCTCTAACTTCTCCTAATCAATATGCCTTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5728664 227 +   6154872 -----GCT------------------------------------------------------------------TCCCATGACTTCCATCTCCAGTTCCAATAAATACCTTCTTTTTAAAAATTTCCTGATATTACCCAGTAACTCTCATCCCTATTTCCCTTTGAAGTACTC--ATGTTTTTTATGATCCCTTCCCCCAACACTTTTCTTGCCTTCA-----------ATG------------------------------TATTTTTAATGACTGGTGACCTCTTACCTCTCCTTCTTTTACTTTAACCTCTAACTTCTCCTAATCAATATGCCTTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742          2176263 301 -   2232465 -----GCTACTTGGGCCTAGATCCAACCAGAGAAACCTCTAAAAGAAAGAGCAGAGATGACAGAAGAATGGAAGCCCTCTGACTTTCACCTTAAATTCCAGTGGCTACCTTTCTTTTTTTAATTTACTGATATCACCCAGTACGTCCCATCCCTAGGTCCCTTTAAGATACTC--ATGTTTTCCCTGA-ACTTTCTCCCAACATTTTTCTTGCTTTCACTGACCTGTTTCTG------------------------------TATTTTTAATCACT--CAACATTTTATTTCTCCTTCTTTTGCTCTAACCTGTACCCTCTCCTGATCCAACATCCTTAAA
i otoGar3.GL873742         I 22 C 0
s dasNov3.JH569098           249057 261 -    254539 ACAGCACT------------------------------------------------------------------TCTCACAACTTCCACCTTAAATTCCAAAGGGCACCTTCCCTTCTTGAACTCCCTAATCTCACCCAGTAACCCCCCTCCCTACCTCCCTTTGAGATACTCCGATATTCTTCAACA-CCCCTCCCCCAACACCGTTTTTGCCTTCA-----------GTGATCCCCTCATTTACCTAGTTCATCAATTTTCATTTTTTATTAGCCATGACCCACTATGTCTCCTGC-TTTGCTTTAACCTCTACCCTCCCCTG-TCCATCTTCCTTAAA
i dasNov3.JH569098         C 0 I 1
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     495332 60664 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=269419.000000
s hg38.chr6_GL000254v2_alt   714353 388 +   4827813 ACTCTTTCAGTGaaggcaaaatgatgaagaaagtagaaatatcagtggtttccagaggttacagcaggagtatggggtcagagaaggaatgatgaatagaaagcacagagaaccttggggcagtcacactattctgtatgtactaggattcacttgtccaaacacatagaatatatagtaccaagagtgagtcctgaagtaaacaatggacgttgggtgataatgatatgtcagtgtaagtttatcagttataacaaattacca-------ctctaatatgggatgttgttagtaggagagtccacctagggaggaagggcagg----aggtatacagaaaacctctctactctctgttcagttt-----------------tactatTTAAAGAAAA--------------------------------------------GGAAAGAAGAAG--------------------AAAACT
s panTro5.chr6             29687788 388 + 175400573 ACTCTTTCAGTGaaggcaaaatgatgaagaaagtagaaatatcagtggtttccagaggttacagcaggagtatggggtcagagaaggaatgatgaatagaaagcacagagaactttggggcagtcacactattctgtatgtactaggattcacttgtccaaacacatagaatatatagtaccaagagtgagtcctgaagtaaacaatggacgttgggtgataatgatatgtcagtgtaagtttatcagttataacaaattacca-------ctctaatatgggatgttgttagtaggagagtccacctagggaggaagggcagg----aggtatacagaaaacctctctactttctgttcagttt-----------------tactatTTAAAGAAAA--------------------------------------------GGAAAGAAGAAG--------------------AAAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29918533 388 + 173848474 ACTCTTTCAGTGaaggcaaaatgatgaagaaagtagaaatatcagtggtttccagaggttacagcaggagtatggggtcagagaaggaatgatgaatagaaagcacagagaactttggggcggtcacactattctgtatgtactaggattcacttgtccaaacacatagaatatatagtaccaagagtgagtcctgaagtaaacaatggacgttgggtgataatgatatgtcagtgtaagtttatcagttataacaaattacca-------ctctaatatgggatgttgttagtaggagagtccacctagggaggaagggcagg----aggtatacagaaaacctctctactttctgttcagttt-----------------tactatTTAAAGAAAA--------------------------------------------GGAAAGAAGAAG--------------------AAAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5728891 388 +   6154872 ACTCTTTCAGTGaaggcaaaatgatgaaaaaagtagaaatatcagtggtttccagaggttacagcaggagtatggggtcagagaaggaatgatgaatagaaagcacagagaactttggggcagtcacactactctgtatgtactaggattcacttgtccaaacacatagaatatatagtactaagagtgagtcctgaagtaaacaatggacgttgggtgataatgatatgtcagtgtaagtttatcatttataacaaattacca-------ctctaatatgggatgttgttagtaggagagtccacctagggaggaagggcagg----aggtatacagaaaacctctctactttctgttcagttt-----------------tactatTTAAAGAAAA--------------------------------------------GGAAAGAAGAAG--------------------AAAACT
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742          2176564 464 -   2232465 ACTCtttcagagaaggcaaaactatggaggtagtaaaaagatcggtgattgctgggagtgataata------------cgcagagggaaggataaatag-gggaatggaggatttttag---ggcaaaccatttggtacatactatgatacatttgtccaaacccaaagaatgcacaacactaagagtgagtcctaatgtaaaccatgtactttgggtgataatgatgcattggtgtgaatttattagttataacaaattaccacacccatcccaaatgtgggatgttgatagtggaagagtccattacagcaggaagaacaggaagaaggtatttaggaaacctttgttctttTTgttcaatttggctttgaatccaaaactgctttcaaaatataattcaggctaggtgccttggcatgcgcctggaatttcagctacttgggaagctgaggcaggcagatttcgttagtccaggact
i otoGar3.GL873742         C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e dasNov3.JH569098           249318   1 -    254539 I
e proCoq1.NW_012152574v1     495332 60664 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=85935.000000
s hg38.chr6_GL000254v2_alt   714741  98 +   4827813 TCAA-------------------------------------------ATACCTCCCTATAATCCTATACTAAATGATACTCTAGCTATCTTGCCCCCTCTTAATTACCAGAAGTTTCTAATCTCTACATATGTTAAGTACT
s panTro5.chr6             29688176  98 + 175400573 TCAA-------------------------------------------ATACCTCCCTATAATCCTATACTAAATGATACTCTAGCTATCTTGCCCTCTCTTAATTACCAGAAGTTTCTAATCTCTACATATGTTAAGTACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29918921  98 + 173848474 TCAA-------------------------------------------ATACCTCCCTATAATCCTATACTAAATGATACTCTAGCTATCTTGCCCTCTCTTAATTACCAGAAGTTTCTAATCTCTACATATGTTAAGTACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5729279  98 +   6154872 TCAA-------------------------------------------ATACCTCCCTATAATCCTATACTAAATGATACTCTAGCAATCTTGCCCTCTCTTAATTACCAGAAGTTTCTAAACTCTACATATGTTAAGTACT
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742          2177028 141 -   2232465 ttgaagcCAAAACAGGAATATTGCATCTCAAAAATATAAATAAATACATATCTCTTCCTAACTCAACATTAAGTGACCCTCCCCCAATCTTGTCCTGTCCTAATTACCAAATCTCTCTAACTTCTACATATGTCAAGTAGT
i otoGar3.GL873742         C 0 C 0
s dasNov3.JH569098           249319  96 -    254539 TCAA-------------------------------------------ATATCTCCCCATATCCCTACACTAAATGACACTT--GTACTCGTCCCCTCTCTTAATTATCCATACTCCCCAATCTCTACATAAATTAAGTATT
i dasNov3.JH569098         I 1 N 0
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     495332 60664 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=124667.000000
s hg38.chr6_GL000254v2_alt   714839 168 +   4827813 CAAAAAATATTTCAAAAAATCAAATATCAAAAATAAATTACTCAAGCTACGTCTCACAAAAAAGTATCTTTCTTTCCCAGTTATGATTTTTCTTCCTTCTTCTGATATCCTCACAACTGAACATTTCCTTCGAATACACCCACCCACCCATAAATGACCAATCtttct
s panTro5.chr6             29688274 168 + 175400573 CAAAAAATATTTCGAAAAATCAAATATCAAAAATAAATTACTCAAGCTACGTCTCACAAAAAAGTATCTTTCTTTCCCAGTTATGATTTTTCTTTCTTCTTCTGATATCCTCACAACTGAACATTTCCTTCGAATACACCCACCCACCCATAAATGACCAATCtttct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29919019 168 + 173848474 CAAAAAATATTTCAAAAAATCAAATATCAAAAATAAATTACTCAAGCTACGTCTCACAAAAAAGTATCTTTCTTTCCCAGTTATGATTTTTCTTTCTTCTTCTGATATCCTCACAACTGAACATTTCCTTCGAATACACCCACCCACCCATAAATGACCAATCtttct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5729377 167 +   6154872 CAAAAAATATTTCAAAAAATCAAATATCAAAAATAAATTACTCAAGCTACGTCTCAC-AAAAAGTGTCTTTCTTTCCCAGTTATGATTTTTCTTCCTTCTTCTGATATCCTCACAACTGAACATTTCCTTCAAATACACCCACCCACCCATAAATGACCAATCtttct
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742          2177169 159 -   2232465 CCAAAAATATTTCAAAATATCAAACATCAAAAAGAAATTATCTAAGC--CCTCCCACAAAATAAAAT-TATTTTTCTCAATTAAGATTTTTCTTTCTCCTTCTAATATCCTCACAACTGAATGTTTCTTTCCAATACA------CACACACAAATCATCATTCTTACT
i otoGar3.GL873742         C 0 I 14
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     495332 60664 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=83782.000000
s hg38.chr6_GL000254v2_alt   715007 151 +   4827813 ct-tttttttgttgttttggagatggagtctcgctctgactcccaggctggagttcagtggcatgatctcggctcaatgcaacctccacctcccaggtttaagcaattctcctgcctcagcctccagagtagctgggactacaggcatgcac
s panTro5.chr6             29688442 151 + 175400573 ct-tttttttgttgttttggagatggagtctcgctctgactcccaggctggagttcagtggcatgatctcggctcaatgcaacctccacctcccaggtttaaacaattctcctgcctcagcctccagagtagctgggactacaggcatgcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29919187 152 + 173848474 ctctttttttgttgttttggagatggagtctcgctctgactcccaggctggagttcagtggcatgatctcggctcaatgcaacctccacctcccaggtttaagcaattctcctgcttcagcctccagagtagctgggactacaggcatgcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5729544 152 +   6154872 ctttttttttgttgttttggagatggagtctcgctctgactcccaggctggagttcagtggcatgatctcggctcaatgcaacctccacctcctaggtttaagcaattctcctgcctcagcctccagagtagctgggactacaggcatgcac
i gorGor5.CYUI01015250v1   C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     495332 60664 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e otoGar3.GL873742          2177328  14 -   2232465 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=9321.000000
s hg38.chr6_GL000254v2_alt   715158 11 +   4827813 caccacgtcca
s panTro5.chr6             29688593 11 + 175400573 cactacgtcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29919339 11 + 173848474 caccacgtcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5729696 11 +   6154872 caccacatcca
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742          2177342 11 -   2232465 CACCACATCCA
i otoGar3.GL873742         I 14 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     495332 60664 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376  1 +     27237 I

a score=87612.000000
s hg38.chr6_GL000254v2_alt   715169 158 +   4827813 gccaatttttgtatctttagtagagatggggtttttccatgttggccaggctggtcttgaactcctgacctcaggtgatctgcctgcctcagcctcccaaagtgctagtattacaagcctgagtcaccgtgcccggccCAAATGACCATCTTTCTTAC
s panTro5.chr6             29688604 158 + 175400573 gccaatttttgtatctttagtagagatggggtttttccatgttggccaggctgatcttgaactcctgacctcaggtgatctgcctgcctcagcctcccaaagtgctactattacaagcctgagtcaccgtgcccggccCAAATGACCATCTTTCTTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29919350 158 + 173848474 gccaatttttgtatctttagtagagatggggtttttccatgttggccaggctggtcttgaactcctgacctcaggtgatctgcctgcctcagcctcccaaagtgctagtattacaagcctgagtcactgtgcctggccCAAATGACCATCTTTCTTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5729707 158 +   6154872 gccaatttttgtatctttagtagagatggggtttttccatgttggccaggctggtcttgaactcctgacctcaggtgatctgcctgcctcagcctcccaaagtgctagtattacaagcgtgagtcaccgtgcccagccCAAATGACCATCTTTCTTAC
i gorGor5.CYUI01015250v1   C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     495332 60664 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e otoGar3.GL873742          2177353   0 -   2232465 C
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=142875.000000
s hg38.chr6_GL000254v2_alt   715327 207 +   4827813 CACTCATCCACAAAGCTCACAAAACGAGAAGCTGCTCAAAACACTGAGATGCCCCTCTAGGCTGGTAACAGCGTGACTTAGAATAAGTCCTCCAACTTTTCTAGCTTTCTCA-CCGAAAAATGGGCCTGTGGCAGCACAGTTTTATGAGTAACTAAGATATGGGATGTAGAAAGACCCTAGAAGAGG-AAAAAAAACACAACAATGGTC
s panTro5.chr6             29688762 206 + 175400573 CACTCATCCACAAAGCTCACAAAACGAGAAGCTGCTCAAAACACTGAGATGCCCCTCTAGGCTGGTAACAGCGTGACTTAGAATAAGACCTCCAAC-TTTCTAGCTTTCTCA-CCGAAAAATGGGCCTGTGGCAGCACAGTTTTATGAGTAACTAAGATATGGGATGTTGAAAGACCCTAGAAGAGT-AAAAAAAACACAACAATGGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29919508 207 + 173848474 CACTCATCCACAAAGCTCACAAAACGAGAAGCTGCTCAAAACACTGAGATGCCCCTCTAGGCTGGtaacagcgtgacttagaataagtcctccaacttttctagctttctca-ccgaaaaatgggcctgtggcagcacagttttatgagtaactaagatatgggatgttgaaagaccctagaagagt-AAAAAAAACACAACAATGGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5729865 207 +   6154872 CACTCATCCACAAAGCTCACAAAATGAGAAGCTGCTCAAAACACTGAGATGCCCCTCTAGGCTGGTAACAGCGTGACTTAGAATAAGTCCTCCAAC-TTTGTAGCTTTCTCA-CCCAAAAATGGGCCTGTGGCAGCACAGTTTTATGAGTAACTAAGATATGGGATGTTGAAAGACCCTAGAAAAGCAAAAAAAAACACAACAATGGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873742          2177353 204 -   2232465 TACGCACATACACAGCGCACAAAGAGAGCAGCTTCTCAAAACCCTTGGATGCCTGGCTGGGCTGGTAACACTGTCACCAGGAGCAAGTCTTTTGAT-TCCTCAGCTTTCTCACCCGGAAAATGGGCCCATTGCAGCACGCTTTTATGAGTAGCTACAATATGAGCTCTTGAGATATCCTTG---AGT-TAACGAAACGCAATGGTAATC
i otoGar3.GL873742         C 0 N 0
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     495332 60664 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=3205206.000000
s hg38.chr6_GL000254v2_alt   715534 5949 +   4827813 [encoded data, 5965 characters]
s panTro5.chr6             29688968 5896 + 175400573 [encoded data, 5965 characters]
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29919715 5890 + 173848474 [encoded data, 5965 characters]
i panPan2.chr6             C 0 I 4
s gorGor5.CYUI01015250v1    5730072 5881 +   6154872 [encoded data, 5965 characters]
i gorGor5.CYUI01015250v1   C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     495332 60664 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376    1 +     27237 I

a score=70432.000000
s hg38.chr6_GL000254v2_alt   721483 260 +   4827813 tcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggcggaggttccagtgagccgagatcacaccactgtactccagcctgggcgacagagtgaaactcagtctaaaaaaaaaaaaagccgggcacggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcggatcacgaggtcaggagatcgagaccatggtgaaaccccgtctctactaaaaatacaaaaaattagctgggc
s panTro5.chr6             29694864 260 + 175400573 tcccagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcggaggttccagtgagccgagatcacaccactgtactccagcctgggcgacagagtgaaactcagtctaaaaaaaaaaaaagccgggcacggtggctaacgcctgtaatcccagcactttgggaggccgaggtgggcggatcacgaggtcaggagatcgagaccatgatgaaaccctgtctctactaaaaatacaaaaaattatctgggc
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5735953 257 +   6154872 tcccagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcggaggttccagtgagccaagatcacaccactgtactccagcctgggcgacagagtgaaactcagtct---aaaaaaaaaagctgggcacggtggctcacgcctgtaatctcagcactttgggaggccgtggtgggcggatcacgaggtcaggagatcgagaccatggtgaaaccccgtctctactaaaaatacaaaaaattagctgggc
i gorGor5.CYUI01015250v1   C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     495332 60664 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e panPan2.chr6             29925605   4 + 173848474 I

a score=318589.000000
s hg38.chr6_GL000254v2_alt   721743 590 +   4827813 gtggtggcgggcgcctgtagtcccagctattcgggaggttgaggcaggagaatggcgtgaacccggaaggcagagttttcagtgagccgagatcgcgccactgcactccagcctgggcaacagagcaagactccgtctcaaaaaaaaaaaaaaTTAAATTAAAAAGCTataaaagctataatgagatatcacctgatatccactagaatgtctatcacatgaccctgaaattccacaaataggttttgaccaaagagaaatgaaaatacacatacacaaaagacttgtacatgaaagtttatagcagattgattcacaacagcaaaaactggaaaccacccCACACTGTttctctattacagcataaaaagttatcccaaaacttaatggcttcaaacaacaaatatttattatctcacagtttctatgggccagcaattcagaagcagctaaatagtagctggtgattctagcttaggatctttcttttaacttttt-aaaaactttttgtgaatacatagtagatgtatctattttaggatctttcttgacattgtagtcaagaagtcagctgattgtatttct---aagat
s panTro5.chr6             29695124 594 + 175400573 gtggtggcgggcgcctgtagtcccagctattcaggaggttgaggcaggagaatggcgtgaacccggaaggcagagtttgcagtgagccgagatcgcgccactgcactccagcctgggcaacagagcaagactccgtctcaaaaaaaaaaaaaaTTAAATTAAAAAGCTataaaagctataatgagatatcacctgatatccactagaatgtctatcacatgaccctgaaattccactaataggttttgaccaaagagaaatgaaaatacacatccacaaaagacttgtacatgaaagtttatagcagattgattcacaacagcaaaaactggaaaccacccCACactggttctctattacagcataaaaagttatcccaaaatttaatggcttcaaacaacaaatatttattatctcacagtttctatgagccagcaattcagaagcagctaaatagtagctggtaattctagcttaggatctttcttttaactttttaaaaaactttttgtgaatacatagtagatgtatctattttaggatctttcttgacattgtagtcaagatgtcagctgattgtatttctaagaagat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29925609 586 + 173848474 gtggtggcgggcacctgtagtcccagctattcgggaggttgaggcaggagaatggcgtgaacccggaaggcagagtttgcagtgagccgagatcgcgccactgcactccagcctgggcaacagaacaagactccgtctc---aaaaaaaaaaatta----aaaaaGCTataaaagctataatgagatatcacctgatatccactagaatgtctatcacatgaccctgaaattccactaataggttttgaccagatagaaatgaaaatacacatccacaaaagacttgtacatgaaagtttatagcagattgattcacaacagcaaaaactggaaaccacccCACACTGgttctctattacagcataaaaagttatcccaaaatttaatggcttcaaacaacaaatatttattatctcacagtttctatgggccagcaattcagaagcagctaaatagtagctggtaattctagcttaggatctttcttttaacttttt-aaaaactttttgtgaatacatagtagatgtatctattttaggatctttcttgacattgtagtcaagatgtcagctgattgtatttctaagaagat
i panPan2.chr6             I 4 C 0
s gorGor5.CYUI01015250v1    5736210 593 +   6154872 gtggtggcgggcgcctgtagtcccagctatttgggaggttgaggcaggagaatggcgtgaacccagaaggcagagtttgcagtgagctgagatcgtgccactgcactccagcctgggcaacagagcaagactccgtctcaaaaaaaaaaaaaaTTAAATTAAAAAGCTataaaagctataatgagatatcacctgatatccactagaatgtctatcacatgaccctgaaattccactaataggttttgaccaaagagaaatgaaaatacacatccacaaaagacttgtacatgaaagtttatagcagattgattcacaacagcaaaaactggaaaccacccCACactggttctctattacagcataaaaagttatcccaaaacttaatggcttcaaacaacaaatatttattatctcacagtttctatgggccagcaattcagaagcagctaaatagtagctggtgattctagcttaggatctttcttttaacttttt-aaaaactttttgtgagtacatagtagatgtatctattttaggatctttcttgacattgtagtcaagaagtcagctgattgtatttctaagaagat
i gorGor5.CYUI01015250v1   C 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e proCoq1.NW_012152574v1     495332 60664 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=499568.000000
s hg38.chr6_GL000254v2_alt   722333 635 +   4827813 ttggatgaagctgaaggattcacttacaagatgtcccagtcacatgttgcacgtttttagtagggagccttagtttctccccatatgtgtgtttccattcactgctaggatggcttcctccaaagtaaacaatcc-----------acaaagaagaagtcacaatgttactgtgacatagtctttgatgtcacatcccatcgtttctaccagattctatttgttaaaactgagtcactcagtacagctcccatgcaaaggtaagggaagtaggctctactttgtgaag---gggatataagaaaattgggggccatatttta----aaacaaccacaaacctgaatgttcatcaacaagtgaatggatgaaaaaattgtgatatatttaggcaagagaatactactcactgatatttttaaaaaagaattggactattgat-acacaaaacaacagggatgattctccaaactgtggtacagagcataacacaccaaacac-aaagagtatgtgctgaatgaatcttttatgtgaagttctggaaaaagcaaaacaaaatgatagaaatcagagcagtggttgcctagagca-----tggggagaattattgtaaatgggcatgatgaaatttctggagtgatggaaatgttctatatct
s panTro5.chr6             29695718 634 + 175400573 ttggatgaagctgaaggattcacttacaagatgtcccagtcacatgttgcacgtttttagtagggagccttagtttctccccatatgtatgtttccattcactgctaggatggcttctttcaaagtaaacaatcc-----------acaaagaagaagtcacaatgctactgtgacatagtctttgatgtcacatcccatcatttctaccagattctatttgttaaaactgagtcactcagtacagctcccatgcaaaggtaaaggaaataggctctactttgtgaag---gggatataagaaaattgggggccatatttta----aaacaaccacaaaccagaatgttcatcaacaagtgaacggatgaaaaaattgtgatatatttaggcaagagaatactactcactgatatttttaaaaaagaattggactattgat-acacaaaacagcagggatgattctccaaactgtggt--agagtataacacaccaaacacaaaagagtatgtgctgaatgaatcttttatgtgaagttctggaaaaagcaaaacaaaatgatagaaatcagagcagtggttgcctagagca-----tggggagaattattgtaaatgggcatgatgaaatttctggagtgatggaaatgttctatatct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29926195 636 + 173848474 ttggatgaagctgaaggattcacttacaagatgtcccagtcacatgttgcacgtttttagtagggagccttagtttctccccatatgtgtgtttccattcactgctaggatggcttcctccaaagtaaacaatcc-----------acaaagaagaagtcacaatgttactgtgacatagtctttgatgtcacatcccatcatttctaccagattctatttgttaaaactgagtcactcagtacagctcccatgcaaaggcaagggaagtaggctctactttgtgaag---gggatataagaaaattgggggccatatttta----aaacaaccacaaacctgaatgttcatcaacaagtgaatggatgaaagaattgtgatatatttaggcaagagaatactactcactgatatttttaaaaaagaattggactgttgat-acacaaagcagcagggatgattctccaaactgtggtacagagtataacacaccaaacacaaaagagtatgtgctgaatgaatcttttatgtgaagttctggaaaaagtaaaacaaaatgatagaaatcagagcagtggttgcctagagca-----tggggagaattattgtaaatgagcatgatgaaatttctggagtgatggaaatgttctatatct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5736803 637 +   6154872 ttggatgaagctgaaggattcacttacaagatgtcccggtcacatgttgcacgtttttagtagggagccttagtttctccccatatgtgtgtttccattcactgctaggatggcttcctccaaagtaaacaatcc-----------acaaagaagaagtcacaatgttactgtgacatagtctttgatgtcacatcccatcatttctaccagattctatttgttaaaactgagtcactcagtacagctcccatgcaaaggcaagggaagtaggctctactttgtgaag---gggatataagaaaattgggggccgtatttta----aaacaaccacaaacctgaatgttcatcagcaagtgaatggatgaaaaaattgtgatatatttaggcaagagaatactactcactgatatttttaaaaaagaattggactattgataacacaaaacaacagggatgattctccaaactgtggtacagagtataacacaccaaacacaaaagagtatgtgctgaatgaatcttttatgtgaagttctggaaaaagcaaaacaaaatgatagaaatcaaagcagtggttgcctagagca-----tggggagaattattgtaaatgggcatgatgaaatttctggagtgatggaaatgttctatatct
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     555996 653 +    730504 ttggatgaagctggaggatcagcttacaagatgtcccagtcacacgttgc-tgttttta--aggcagacttagttcct-cccatctgtatgtctccatccactgcttggatggcttcccccagcgtgaacaacccaaaagaaaaggacaaggagaaagtcacaatgccactatgacctagtcttggatgtcacacatcatcatttctgccacattctatttcttaaaagtgagtcactaagtagagctcacactcaaagggaagggacgtagactctaccttgtgaaggaaggaatatcaaaaaattgggggacatattttaaaacAAACAACCACAaacccaaatttccatcaacaggtgaatggaggaacaaattgtgatatattttaacaatggaatactactcagta--aatttaaaaaaaggaatgaactattaat-acacaaaacaacatggatcaatctcaaaaatgttatacagagtacaagacactcaacacaaaagagtatgtactgaatgaatcttttatatgacatactagaacaggcaaaacaaaatgatagaaattcgatcagtggttgcctaatgcatggagtggggagaattattgtcaatgagcatgagcaactttctggagtaatggaaatgttctatatct
i proCoq1.NW_012152574v1   I 60664 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=87868.000000
s hg38.chr6_GL000254v2_alt   722968 77 +   4827813 tcagtagggtaatggttgtctggatgtatacatttgttcacattcagtgaattgtccattaaaatatgtgcacttca
s panTro5.chr6             29696352 77 + 175400573 tcagtagggtaatggttgtctggatgtatacatttgttcacattcagtgaattgtccattaaaatatgtgcacttca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29926831 77 + 173848474 tcagtagggtaatggttgtctggatgtatacatttgttcacattcagtgaattgtccattaaaatatgtgcacttca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5737440 77 +   6154872 tcagtaggataatggttgtctggatgtatacatttgttcacattcagtgaattgtccattaaaatatgtgcacttca
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     556649 77 +    730504 tcactagggtggcggttgcctggatgtatacatttgtcaaaattcagtgaattgcccattaaaatatgtgcatttca
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            12487 77 +  18854210 TCACAAGAACgatgattgcctgcttgtgtacatttctcaaaatccagtgaattgtccattgaaatatatgcatttca
i otoGar3.GL873550         N 0 C 0
e mm10.chr17               57782825 84004 -  94987271 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376  1 +     27237 I

a score=89729.000000
s hg38.chr6_GL000254v2_alt   723045 72 +   4827813 ttatgtaaattataccttaaTTTTAAAAAGAGAAAGGAAATAAACCAAAGTCAGGGGGGATTGAATGAGCAC
s panTro5.chr6             29696429 72 + 175400573 ttatgtaaattatatcttaaTTTTAAAAAGAGAAAGGAAATAAACCAAAGTCAGGGGGGATTGAATGAGCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29926908 72 + 173848474 ttatgtaaattataccttaaTTTTAAAAAGAGAAAGGAAATAAACCAAAGTCAGGGGGGATTGAATGAGCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5737517 72 +   6154872 ttatgtaaattataccttaaTTTTAAAAAGAGAAAGGAAATAAACCAAAGTCAGGGGGGATTGAATGAGCAC
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     556726 71 +    730504 ttatgtaaatgatacctcaa-tttaaaagtagaaaggaaaTAAACCAAAGTAAGGTGGCATTGAATGAATGC
i proCoq1.NW_012152574v1   C 0 I 19
s otoGar3.GL873550            12564 71 +  18854210 ttatgtaaatgatacctTGA-TTTAAAAGGAGAAAGGAAACAAACCAAAGTAAGGTGGTATTGAATGAGCAC
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57866829 69 -  94987271 TTATGTAAACTGCACCTCAATTT---AAAGAGATAAGACATTGAATACAGTACTTATGTATTAGGAGACTTG
i mm10.chr17               I 84004 C 0
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376  1 +     27237 I

a score=10175.000000
s hg38.chr6_GL000254v2_alt   723117 17 +   4827813 ATTCGAGGCTTGAGAGG
s panTro5.chr6             29696501 17 + 175400573 ATTCGAGGCTTGAGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29926980 17 + 173848474 ATTCGAGGCTTGAGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5737589 17 +   6154872 ATTCGAGGCTTGAGAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873550            12636 16 +  18854210 GTCTAAGACAGGCAAT-
i otoGar3.GL873550         I 1 I 2
s mm10.chr17               57866898 17 -  94987271 AAGTGAGGCTTAAGAGA
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     556797 19 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376  1 +     27237 I

a score=104568.000000
s hg38.chr6_GL000254v2_alt   723134 88 +   4827813 AAGGCTGGAAATATGGGACACTCAGAAGGTGTGGATCAGGAGAGAATAGTGCCCTTTTACTCCCCAGTGACACGGAGAAGCAGTGGTG
s panTro5.chr6             29696518 88 + 175400573 AAGGCTGGAAATATGGGACACTCAGAAGGTGTGGATCAGGAGAGAATAGTGCCCTTCTACTCCCCAGTGACATGGAGAAGCAGAGGTG
i panTro5.chr6             C 0 I 658
s panPan2.chr6             29926997 88 + 173848474 AAGGCTGGAAATATGGGACACTCAGAAGGTGTGGATCAGGAGAGAATAGTGCCCTTCTACTCCCCAGTGACATGGAGAAGCAGAGGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5737606 88 +   6154872 AAGGCTGGAAATATGGGACACTCAGAAGGTGTGGATCGGGAGAGAATAGTGCCCTTCTACTCCCCAGTGACACGGAGAAGCAGTGGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     556816 88 +    730504 AAGACAGGAACTATGAGACACTCAGGAAATGGTGGTGACGAGAGAATAGTGCCCTTCTACTCCCCAGTGACACAGAGCAGCAGAGGTG
i proCoq1.NW_012152574v1   I 19 C 0
s otoGar3.GL873550            12654 88 +  18854210 AAGATTGGCACTATGAGATGTTGGGATGATGGGGGTGAGGAGAAAATAGTGCCCTTCCACTCCCCAGTGACACAGAGGAGCAGAGGTG
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               57866915 66 -  94987271 --------AAACAGAGGACAC--------------CATAGACAAGATAATGTCAAGGTTGTCTCTAGTGACACTGAGGAGCAGAGATG
i mm10.chr17               C 0 C 0
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376  1 +     27237 I

a score=119177.000000
s hg38.chr6_GL000254v2_alt   723222 117 +   4827813 ACC-TTTTTATATGCCAAAGGGAACTCAGTTGCTGGCACACTTCCTTTGAATCTTCAC----ATTCCTTCTTAAC---CATTAGTAGCTGTGGCCAATTAGCTGTCTATAGGTTATGGGGCACCT-
s panTro5.chr6             29697264 117 + 175400573 aCC-TTTTTATATGCCAAAGGGAACTCAGTTGCTGGCACACTTCCTTTGAATCTTCAC----ATTCCTTCTTAAC---CATTAGTAGCTGTGGCCAATTAGCTGTCTATAGGTTATGGGGCCCCT-
i panTro5.chr6             I 658 C 0
s panPan2.chr6             29927085 117 + 173848474 ACC-TTTTTATATGCCAAAGGGAACTCAGTTGCTGGCACACTTCCTTTGAATCTTCAC----ATTCCTTCTTAAC---CATTAGTAGCTGTGGCCAATTAGCTGTCTATAGGTTATGGGGCCCCT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5737694 116 +   6154872 -AC-TTTTTATATGCCAAAGGGAACTCAGTTGCTGGCACACTTCCTTTGAATCTTCAC----ATTCCTTCTTAAC---CATTAGTAGCTGTGGCCAATTAGCTGTCTATAGGTTATGGGGCCCCT-
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     556904 117 +    730504 ACCATATTTACTTACCACTGGGAACACCGTTGCT-GCATATTTACTCTGAATCTTCTC----ATCCCTTCTTAAC---CATTAGTAGCAGTGGCTAATTAATTGTCTGTGGGCTGTGGGGCCCCA-
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            12742 116 +  18854210 ACT-TTCATATTTACCACTGGGAGCACCATTGCTGGCACATTTTCTTTGAATCCTCTC-----TTCGTTCTTAAC---CATTAGTACCAGTGGCTAATTAGCAGTCAATGGCCTAAGGGGCCCCT-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57866981 103 -  94987271 -----ACCTACTCACTA----------------TGGAATATTCTAATGGAATGTTGTCGTCAATTTGATCTTAACCATCATTATCAACAGTGGCTAATTAACCATCAGTGGGC--AGAGGCACCAG
i mm10.chr17               C 0 C 0
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=209248.000000
s hg38.chr6_GL000254v2_alt   723339 131 +   4827813 AGTCTTGGCAGAATTAATGAGCTACTTCTCTCTATGGGATGGGAGTCTTGGGATTCCTCCCCCCATCATCTCACTATGCCTTTTTTTCTGCCTTTAATGTCACTA-----------AAAGAGAGGTTAACTTACTGGATTGA
s panTro5.chr6             29697381 131 + 175400573 AGTCTTGGCAGAATTAATGAGCTACTTCTCTCTATGGGATAGGAGTCTTGGGATTCCTCCCCCCATCATCTCACTATGCCTTTTTTTCTGCCTTTAATGTCACTA-----------AAAGAGAGGTTAACTTACTGGATTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29927202 131 + 173848474 AGTCTTGGCAGAATTAATGAGCTACTTCTCTCTATGGGATAGGAGTCTTGGGATTCCTCCCCCCATCATTTCACTATGCCTTTTTTTCTGCCTTTAATGTCACTA-----------AAAGAGAGGTTAACTTACTGGATTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5737810 131 +   6154872 AGTCTTGGCAGAATTAATGAGCTACTTCTCTCTATGGGATAGGAGTCTTGGGATTCCTCCCCCCATCATCTCACTATGCCTTTTTTTCTGCCTTTAATGTCACTA-----------AAAGAGAGGTTAACTTACTGGATTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s colAng1.NW_012115566v1    2578372 131 -   3067355 AGTCTTGGGAGAATTAACGAGCCATTTCTCTCCATGGGATGGGAGTCCTGGGATCCCTCCCTCCATCACTTCACCACGTTTCCTTTTCTATCTCCACTACCACTA-----------AAAGAGAGGTTAATTTACTGGACTGA
i colAng1.NW_012115566v1   N 0 I 24205
s proCoq1.NW_012152574v1     557021 129 +    730504 AGTCTTGGCAGAATTAACGAGCTGTTTCTCTCCATAGCATGGGAGTCCTGGGAT--CTCCCTCTATCATCTCACCGTACCTCTCTTTCTGTCTCCAGTACCACTA-----------AAAGAGAGGTTAAGTGACTGAACTGA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            12858 135 +  18854210 AGTCTTAGCAGAATTAATGAGCTGTTTCTCTCTATGGGATGGGAGTCCTGGGAT--CTATCCCTCT-ATCTCACCATTACTC----TCCGTCTCCAGTACCACTAGAAGAGGGGTTAAAGAGAGGTTAATTTACTGAATTGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57867084 102 -  94987271 AGTCCTGGGAGAACTAACAA---ACATGTCCCTGTGGGATAAGAGTCCAGGGAT------------------------CCCTTCTTTCTATCTCCAGTACCAAGG-----------AAAGGGAAGATACCTTCCTGACTT--
i mm10.chr17               C 0 C 0
e canFam3.chr35            26182574 20218 +  26524999 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=191411.000000
s hg38.chr6_GL000254v2_alt   723470 196 +   4827813 GGAAAAGAAGTCGTTAGCA-AGAGTTCCATAGTAAAGCGCTAACTCTAGCTCATGTGTCTGGCAGAG--CAATGGTGG---AATgtggttagcgcatagcttcttcagccagcccacctgggttaaaatttggtctttggtgcttactagctatactttccagaacaagatattcaacctctacatgtcttcaattattgat
s panTro5.chr6             29697512 196 + 175400573 GGAAAAGAAGTCGTTAGCA-AGAGTTCCATAGTAAAGCGCTAACTCTAGCTCATGTGTCTGGCAGAG--CAATGGTGG---AATgtggttagcgcatagcttcttcaaacagcccacctgggttaaaatttggtctttggcacttactagctgtactttccagaacaagatattcaacctctacatgtcttcaattattgat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29927333 196 + 173848474 GGAAAAGAAGTCGTTAGCA-AGAGTTCCATAGTAAAGCGCTAACTCTAGGTCATGTGTCTGGCAGAG--CAATGGTGG---AATgtggttagtgcatagcttcttcagccagcccacctgggttaaaatttggtctttggtacttactagctgtactttccagaacaagatattcaacctctacgtgtcttcaattattgat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5737941 196 +   6154872 GGAAAAGAAGTCGTTAGCA-AGAGTTCCATAGTAAAGCGCTAACTCTAGCTCATGTGTCTGGCAGAG--CAATGGTGG---AATgtggctagtgcatagcttcttcagccagcccacatgggttaaaatttggtctttggcgcttactagctatactttccagaacaagatattcaacctctacatgtcttcaattattgat
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     557150 196 +    730504 GGAAAAGAGGATGCTAACAAAGAGCTCCATAATAAAGAGCTACCTCTGGCTCATGGATCTGGCCGAG--TGATGGTGG---AATgtggttggtgcatggccttttcagctggcccgcctgggtttaaagctcatctctgctgctt-ctagcaacactttccagaacaagctatttatcctctgtgtgcattcatttctttat
i proCoq1.NW_012152574v1   C 0 I 16
s otoGar3.GL873550            12993 198 +  18854210 CGAAAAGAGGATATTAACAGAGAAGTCCATAACAAAGAGCTACCTCTGGCTTGTGCATCTGGCAGAGACTGATGGTGG---AACAtggttggtacacagcc-tttcagctagcccacctgggtttaaagcgcacctctgacgtttactagtggcactttccagaacaagtgattgatcctctgcatgccttcatttctttat
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57867186 126 -  94987271 -----------------------------------------------------------TGGCAGAA--TAATGGTGGTAAGATGTGGTAAGTG-GCAGGTGCTCGGAGCAGTCTCTTTTGATTCAAGGTTCAGCATTATTGC-----------ATTTTCCTGAAGAATTCTTTT---TTCTGAATGTGTGTGTTTCTTCAT
i mm10.chr17               C 0 C 0
e canFam3.chr35            26182574 20218 +  26524999 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=11074.000000
s hg38.chr6_GL000254v2_alt   723666 13 +   4827813 ctgtaagggaagg
s panTro5.chr6             29697708 13 + 175400573 ctgtaagggaagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29927529 13 + 173848474 ctgtaagggaagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5738137 13 +   6154872 ctgtaagggaagg
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873550            13191 13 +  18854210 gtagaaaggaagg
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57867312 13 -  94987271 CTGAAATCAAAGA
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     557346 16 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376  1 +     27237 I

a score=6382.000000
s hg38.chr6_GL000254v2_alt   723679 5 +   4827813 taata
s panTro5.chr6             29697721 5 + 175400573 taata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29927542 5 + 173848474 taata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5738150 5 +   6154872 taata
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     557362 5 +    730504 taata
i proCoq1.NW_012152574v1   I 16 C 0
s otoGar3.GL873550            13204 5 +  18854210 tagta
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57867325 5 -  94987271 GAGCA
i mm10.chr17               C 0 I 121
e canFam3.chr35            26182574 20218 +  26524999 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376 1 +     27237 I

a score=145650.000000
s hg38.chr6_GL000254v2_alt   723684 142 +   4827813 atagtacccaccttttgaagttataaggagccgtaaatatgaagcgcttttttgagtgcccatggaagtaagcactagcaatcaatACTCTTAACTGAAATCCAAGTTCCAATAATCATCAAGAGTATAACATTCCTCTTTA
s panTro5.chr6             29697726 142 + 175400573 atagtacccaccttttgaagttataaggagccgtaaatatgaagcgcttttttgagtgcccatggaagtaagcactggcaatcaatACTCTTAACTGAAATCCAAGTTCCAATAAACATCAAGAGTGTAACATTCCTCTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29927547 142 + 173848474 atagtacccaccttttgaagttataaggagccgtaaatatgaagcgcttttttgagtgcccatggaagtaagcactggcaatcaatACTCTTAACTGAAATCCAAGTTCCAATAAACATCAAGAGTGTAACATTCCTCTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5738155 142 +   6154872 atagtacccaccttttgaagttataaggagccgtaaatatgaagcgcttttttgagtgcccatggaagtaagcactagcaatcaatACTCTTAACTGAAATCCAAGTTCCAATAAACATCAAGAGTGTAACATTCCTCTTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     557367 142 +    730504 atagtacccacctcttgaagttgaaaggagcaagaaacatgaaatgtttttaaaagtgTCCAAGAAAATAAGCACTGGCAAACATTACTTTTACCTGAAATCTACGCTCTAATCAATTTCAAGGGTGTACTATTCCTCCATA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            13209 141 +  18854210 atagtgcccaactcttgaagttgaaaggagcaataaacatgcagtactttaaaaaatgcccaagaacataagcactAGCAATCCTAACTCTTATCAGAAATCTAAGCTCT-ATCAATTTTAAAGGTGTAATATTCCTCCATA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57867330 121 -  94987271 I
e canFam3.chr35            26182574 20218 +  26524999 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=293220.000000
s hg38.chr6_GL000254v2_alt   723826 275 +   4827813 GTTTGCTTTTAGTTCTCATTGTGAGATCA-CAAGTGGAGGCTCCAACCAGTC-CAGAAGTTCCTTTCTATGGGGAAGCTGTGGCAGCAAGGCCGTGAAGAGAGTCTGACTTAATTGCAAGTAAGTCACAAGTTTATTCCCCTACAGCCCATC-AATTTCCACATGTTCTTAAGACAGTTCTgaatcaaacagggtctacaatcctggcactgacactcattggcagggtaaccctgggcaagttacttaacctctttgagactgtttgttcttctgca
s panTro5.chr6             29697868 275 + 175400573 GTTTGCTTGTAGTTCTCATTGTGAGATCA-CAAGTGGAGGCTCCAACCAGTC-CAGAAGTTCCTTTCTATGGGGAAGCTGTGGCAGCAAGGCCGTGAAGAGAGTCTGACTTAATTGCAAGTAAGTCACAAGTTTATTCCCCTACAGCCCATC-AATTTCCACATGTTCTTAAGACAGTTCTGaagcaaacagggtctacaatcctggcactgacactcattggcagggtaaccctgggcaagttacttaacctctttgagactgtttattcttctgca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29927689 275 + 173848474 GTTTGCTTGTAGTTCTCATTGTGAGATCA-CAAGTGGAGGCTCCAACCAGTC-CAGAAGTTCCTTTCTATGGGGAAGCTGTGGCAGCAAGGCCGTGAAGAGAGTCTGACTTAATTGCAAGTAAGTCACAAGTTTATTCCCCTACAGCCCATC-AATTTCCACATGTTCTTAAGACAGTTCTGaagcaaacagggtctacaatcctggcactgacactcattggcagggtaaccctgggcaagttacttaacctctttgagactgtttgttcttctgca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5738297 275 +   6154872 GTTTGCTTTTAGTTCTCATTGTGAGATCA-CAAGTGGAGGCTCCAACCAGTC-CAGAAGTTCCTTTCTATGGGGAAGCTGTGGCAGCAAGGCCGTGAAGAGAGTCTGACTTAACTGCAAGTAAGTCACAAGTTTATTCCCCTACAGCCCATC-AATTTCCACATGTTCTTAAGACAGTTCTgaatcaaacagggtctacaatcctggcactgacactcattggcagggtaaccctgggcaagttacttaacctctttgagactgtttgttcttctgca
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     557509 270 +    730504 GTTTGCTTTTAGTTCGCATGGTAAGAAT--CAAGTGGAGGCTCTAACCAATCCCAGACGTTCCTTTTCAT-GGGACGCTCTGGTAGCAAGCTGATCAGGAGATTCTGACTTCATTGCAAGTAAGTTACCAGTTTATTCCCCGACGGCTCATC-AATTTC--CATGTTCTCAGTGGTGtttggcatcaaacagggtctagaatcttggtcatggtgcttgttggctgggtagccttgggcaagttactgcacgtctctgagac--tttcttcttctgta
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            13350 257 +  18854210 G-TTGCTTTTAGTTTGCATGGTAAGAAT--CAAATGGAGACAACAACCAATCTCATACGGTCCTGTTCGTGGGGATGCGCTTGTAGCAAGGCGATGAGGAGATTCTGACTTTATTGCAAGTAAGTTCTAAGTTTATTCCTCTATAGTTCATC-AATTTCTACATGTTCTCAATGGTGtttggaatcaaacagggtctagagtcctggtcatggcacttgtt---------------ggcaagctactttgcctctctgagac--tttattcttccata
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57867451 246 -  94987271 ATTTGCTCTCACTTTTCATGGTGTGAAGATCAATTGGAGGCTAC-GTTAACC-CAGAAGCTCCTAATCATGGCCAAGCTTCACCCACCAAGAGATGAGAAGACTTTCACCTGACCAC-AGTAAGTCCTGGGATTTTTCTTCTGTAGTCCAGCAAAATCCCCCATGTCTGAAAGAGTG----GGGACACAT-------------------CTAGCACACGTT----GTATTGTCCTGAACAAAGTATTTAACCTGTCTGGGTT--TTTCTTCATCTGCA
i mm10.chr17               I 121 I 632
e canFam3.chr35            26182574 20218 +  26524999 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=83790.000000
s hg38.chr6_GL000254v2_alt   724101 80 +   4827813 gaga--------------tattaactgtctagcagggttcttttaagaagcagatattccaggaaattatttagcacagtgt-tagtatatagga
s panTro5.chr6             29698143 80 + 175400573 gaga--------------tattaactgtctagcagggttcttttaagaagcagatattccaggaaattatttatcacagtgt-tagtatatagga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29927964 80 + 173848474 gaga--------------tattaactgtctagcagggttcttttaagaagcagatattccaggaaattatttagcacagtgt-tagtatatagga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5738572 80 +   6154872 gaga--------------tattaactgtctagcagggttcttttaagaagcagatattccaggaaattatttagcacagtgt-tagtatatagga
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     557779 89 +    730504 aagaagggataa------cattaactaacttgcagggttgctgtgagaagcaggtattccaggaaattgtttagcacagtgtctggtatatagga
i proCoq1.NW_012152574v1   C 0 I 17
s otoGar3.GL873550            13607 95 +  18854210 aagaaaggataagatgtgaatcgactaacttgtagggttgttgtgagaagcaagtattccaggacattatttagcatagtgtctggtatatagga
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57867697 632 -  94987271 I
e canFam3.chr35            26182574 20218 +  26524999 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376  1 +     27237 I

a score=7976.000000
s hg38.chr6_GL000254v2_alt   724181 12 +   4827813 --ca-tcaacagata
s panTro5.chr6             29698223 12 + 175400573 --ca-tcaacagata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29928044 12 + 173848474 --ca-tcaacagata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5738652 12 +   6154872 --ca-tcaacagata
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873550            13702 15 +  18854210 agcattcactagata
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57867697 632 -  94987271 I
e proCoq1.NW_012152574v1     557868 17 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376  1 +     27237 I

a score=262176.000000
s hg38.chr6_GL000254v2_alt   724193 248 +   4827813 gtaactGTCAAAACTATAAGTGGTTATTATTATTGAACTGTAGGGCAGAATTTG--TCTCATAACTTTGTAGCAGTTAGTACATGACTGGCTCTTTGAGGACCAAAAAAGAATAAATTAATGTGCTTCTGTGTGGAGTTAATGGGATGTAGGGAAAGTAGTGCTTGCCTATTATTGGTGTCAGAGAAAAGGACCAGAAGAAACAGGGTAAGGAAAAGGCATGTTATTAAAGATAGAAAATAGGAGAGTGC
s panTro5.chr6             29698235 248 + 175400573 gtaactGTCAAAACTATAAGTGGTTATTATTATTGAACTGTAGGGCAGAATTTG--TCTCATAACTTTGTAGCAGTTAGTACATGACTGGCTCTTTGAGGACCAAAAAAGAATAAATTAATGTGCTTCTGTGTGGAGTTAATGGGATGTAGGGAAAGTAGTGCTTGCCTATTATTGGTGTCAGAGAAAAGGACCAGAAGAAACAGGGTAAGGAAAAGGCATGTTATTAAAGATAGAAAATAGGAGAGTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29928056 248 + 173848474 gtaactGTCAAAACTATAAGTGGTTATTATTATTGAACTGTAGGGCAGAATTTG--TCTCATAACTTTGTAGCAGTTAGTACATGACTGGCTCTTTGAGGACCAAAAAAGAATAAATTAATGTGCTTCTGTGTGGAGTTAATGGGATGTAGGGAAAGTAGTGCTTGCCTATTATTGGTGTCAGAGAAAAGGACCAGAAGAAACAGGGTAAGGAAAAGGCATGTTATTAAAGATAGAAAATAGGAGAGTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5738664 248 +   6154872 gtaactGTCAAAACTATAAGTGGTTATTATTATTGAACTGTAGGGCAGAATTTG--TCTCATAACTTTGTAGCAGTTAGTACATGACTGGCTCTTTGAGGACCAAAAAAGAATAAATTAATGTGCTTCTGTGTGGAGTTAATGGGATGTAGGGAAAGTAGTGCTTGCCTATTATTGGTGTCAGAGAAAAGGACCAGAAGAAACAGGGTAAGGAAAAGGCATGTTATTAAAGATAGAAAATAGGAGAGTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     557885 235 +    730504 ATAACTGTTAAAACAATACGTAGTTGTCACTATTGGATTGTAGAGCACAATTTGTATCTTATAACCTTGTAGCAGCTAGTACATGGCCGGCTCTTTGGAGACCAACA---------------CATGTATGTGCGCGATTAATGGGAAGTAGGAAAAGTAGTGCTTGCTTATTGTTGGTAACAGAGAAAAGGACCAGAATAAATAGGATAAAGAAAAGATATGTTATTTAAGACAGAAAACAAGAGAGAAC
i proCoq1.NW_012152574v1   I 17 C 0
s otoGar3.GL873550            13717 249 +  18854210 ataactATTAAAACAATAGGTGGTTCTCATGACTGGATTGTAGAATATAATTTATATCTTATAGCCATGTAGCAGCTAGCACATGACTGACTCTTTGGGGACCAATAAAAAATAAACGAATGCATATATGTGTGGAATTAATGGAAAGTAGGAAAAGTAGTGC-TGCCTATTGTTGGTGACAGAGGAAAGAACTGGAATAAATAGGATAAGGAAAGCATGTGTTATTAAAGTCTGGCAACAACAGAGAAC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57867697 632 -  94987271 I
e canFam3.chr35            26182574 20218 +  26524999 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=71037.000000
s hg38.chr6_GL000254v2_alt   724441 53 +   4827813 AGAGGGTCAAAGGAAGATATAAACTGAAGAGATT---AAGAAAAAACATACAGTGA
s panTro5.chr6             29698483 53 + 175400573 AGAGGGTCAAAGGAAGATATAAACTGAAGAGATT---AAGAAAAAACATACAGTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29928304 53 + 173848474 AGAGGGTCAAAGGAAGATATAAACTGAAGAGATT---AAGAAAAAACATACAGTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5738912 53 +   6154872 AGAGGGTCAAAGGAAGATATAAACTGAAGAGATT---AAGAAAAAACATACAGTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     558120 53 +    730504 AGAGAGTCGAAGGAAGCTATCAACTGAAAAGGTT---CAGAAAAAACATACAGTGA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            13966 50 +  18854210 --AGAGTCTAAGGAAGATACCAACTG-AAAGATT---CAGAAAAAACATTCGGTGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57868329 56 -  94987271 AGACAGTCAAAGGATGATGAAAACTGAAGAACTTGAAAATAATAAACTCAAAGTGA
i mm10.chr17               I 632 T 52091
e canFam3.chr35            26182574 20218 +  26524999 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376  1 +     27237 I

a score=125158.000000
s hg38.chr6_GL000254v2_alt   724494 109 +   4827813 GACAAGTTGCCAAGAGAGTAAGAATGTAAGAAATGCTGCAGTTTATGGATGAATAAAACTC--TGGACAATTGCTGAGACACAAAAGATATGAGGCTGCaaagtttaaaaa
s panTro5.chr6             29698536 109 + 175400573 GACAAGTTGCCAAGAGAGTAAGAATGTAAGAAATGCTGCAGTTTATGGATGAATAAAACTC--TGGACAATTGCTGAGACACAAAAGATATGAGGCTGCaaagtttaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29928357 109 + 173848474 GACAAGTTGCCAAGGGAGTAAGAATGTAAGAAATGCTGCAGTTTATGGATGAATAAAACTC--TGGACAATTGCTGAGACACAAAAGATATGAGGCTGCAAAGTTTAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5738965 109 +   6154872 GACAAGTTGCCAAGAGAGTAAGAATGTAAGAAATGCTGCAGTTTATGGATGAACAAAACTC--TGGACAATTGCTGAGACACAAAAGAGATGAGGCTGCAAAGTTTAAaag
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     558173 111 +    730504 GACAAGTTTCCCAGAGAGTAAGAGTGTGAGAAATGCTACAGTTCATGTATGAATAAAACATAGCGGACAattgctgagatacaaaagataggatactgtaaagtttaaaaa
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            14016 111 +  18854210 AGTAAGTTGCCAAGAGAGTAAGACTGTGAAGAATGCTACAGTTCATGGATGAATAACACATAGTGGGCAATTGCTGAGATACAAAAGATACAATGCTGTAAAGTTTAAAAA
i otoGar3.GL873550         C 0 I 908
e mm10.chr17               57868385 52091 -  94987271 T
e canFam3.chr35            26182574 20218 +  26524999 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=96926.000000
s hg38.chr6_GL000254v2_alt   724603 125 +   4827813 ggaacgatacatttaaaataatcagaatagtgtttacttcttcagtgggagagaaggagatgtgatcagggaggagaacacagaagacttctaagataccagtaatatttgatctgttcttaaat
s panTro5.chr6             29698645 125 + 175400573 ggaacgatacatttaaaataatcagaatagtgtttacttcttcagtgggagacaaggagatgtgatcagggaggagaacacagaagacttctaagataccagtaatatttgatctgttcttaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29928466 125 + 173848474 ggaacgatacatttaaaataatcagaatagtgtttacttcttcagtgggagacaaggagatgtgatcagggaggagaacacagaagacttctaagataccagtaatatttgatctgttcttaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5739074 125 +   6154872 ggaacgatacatttaaaataatcagaatagtgtttacttcttcattgggagacaaggagatgtgatcagggaggagaacacagaagacttccaagataccagtaatatttgatctgttcttaagt
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     558284 121 +    730504 -ggatgatgaattaaaaataatcagaatagcgttcacttctccagaagga---aaggagatgtgattaaggaggggcacgcaaaaggcttcaaagatcctggtaacattggttctgttcttaaat
i proCoq1.NW_012152574v1   C 0 I 114
e mm10.chr17               57868385 52091 -  94987271 T
e canFam3.chr35            26182574 20218 +  26524999 I
e otoGar3.GL873550            14127 908 +  18854210 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=59988.000000
s hg38.chr6_GL000254v2_alt   724728 107 +   4827813 caggaggagattcaggtacaccatgtgtttattattccataaaatccatagatgtgttttatatactttttgtttatatgatttttaaaaaatTAAGGGAACAAATC
s panTro5.chr6             29698770 107 + 175400573 caggaggagattcaggtacaccatgtgtttattattccataaaatccatagatgtgttttatatactttttgtttatatgatttttaaaaaatTAAGGGAACAAATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29928591 107 + 173848474 caggaggagattcaggtacaccatgtgtttattattccataaaatccatagatgtgttttatatactttttgtttatatgatTTTTAAAAAATTAAGGGAACAAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5739199 107 +   6154872 caggaggagattcaggtacaccatgtgtttattattccataaaatccatagatgtgttttatatactttttgtttatatgatTTTTAAAAAATTAAGGGAACAAATC
i gorGor5.CYUI01015250v1   C 0 C 0
e mm10.chr17               57868385 52091 -  94987271 T
e proCoq1.NW_012152574v1     558405 114 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e otoGar3.GL873550            14127 908 +  18854210 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=65161.000000
s hg38.chr6_GL000254v2_alt   724835 80 +   4827813 TTATCCTCAAGGAGAGACGTAATGATGGAGGAAGGAATATAGAAGGAGACAAAAAGGAGGGAGTCTTGATGAAAAGGGAG
s panTro5.chr6             29698877 80 + 175400573 TTATCCTCAAGGAGAGACGTAATGATGGAGGAAGGAATATAGAAGGAGACAAAAAGGGGGGAGTCTTGATGAAAAGGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29928698 80 + 173848474 TTATCCTCAAGGAGAGACGTAATGATGGGGGAAGGAATATAGAAGGAGACAAAAAGGAGGGAGTCTTGATGAAAAGGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5739306 80 +   6154872 TTATCCTCAAGGAGAGACGTAATGATGGAGGAAGGAATATAGAAGGAGACAAAAAGGAGGGAGTCTTGATGAAAAGGGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     558519 79 +    730504 TTATCCTCAAGG-GAAAAGTAATAATAGAGGAAGGAATAGACAAGAAGACAAAAACTGGGGGGTCTTGATGAAAGGGGAG
i proCoq1.NW_012152574v1   I 114 I 323
e mm10.chr17               57868385 52091 -  94987271 T
e canFam3.chr35            26182574 20218 +  26524999 I
e otoGar3.GL873550            14127 908 +  18854210 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376  1 +     27237 I

a score=199303.000000
s hg38.chr6_GL000254v2_alt   724915 354 +   4827813 ATGGGAGGCAGCTTTTAACACCAGACAGGGTCCTGTGATGCAGAGGTGATTGTGCCATCCCATAAAGTCCCAGGGCACTGTCTGCCAATGAGACCACCAACTTGCTTGCCCTAAATGGCCACATCCCCTAAACGGCCCTCCTGCCATTGTCTGTGCTCAGAAAACCCTCAGTTTCTGCCTCTTACCTGCCAGGGTGGTGCCGCATCCCACCCCCATCATTGAGCTTGCCTCATGTGTCTCAGCACAGTCTTTTACAGCAAAAATGCATGTCACCTCCTCCTAAAGGCTTTCCGTGGCCCACCCACCCAGATTCCTCCTTTATTGTGCAGACTCTTTCCTAACCCACACCTCATC
s panTro5.chr6             29698957 354 + 175400573 ATGGGAGGCAGCTTTTAACACCAGACAGGGTCCTGTGATGCAGAGGTGATTGTGCCATCCCATAAAGTCCCAGGGCACTGTCTGCCAATGAGACCACCAACTTGCTTGCCCTAAATGGCCACATCCCCTAAACGGCCCTCCTGCCATTGTCTGTGCTCAAAAAACCCTCAGTTTCTGCCTCTTACCTGCCAGGGTGGTGCCGCATCCCACCCCCATCATTGAGCTTGCCTCATGTGTCTCAGCACAGTCTTTTACAGCAAACATGCATGTCACCTCCTCCTAAAGGCTTTCCTTGGCCCACCCACCCAGATTCCTCCTTTATTGTGCAGACTCTTTCCTAACCCACACTTCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29928778 354 + 173848474 ATGGGAGGCAGCTTTTAACACCAGACAGGGTCCTGTGATGCAGAGGTGATTGTGCCATCCCATAAAGTCCCAGGGCACTGGCTGCCAATGAGACCACCAACTTGCTTGCCCTAAATGGCCACATCCCCTAAACGGCCCTCCTGCCATTGTCTGTGCTCAGAAAACCCTCAGTTTCTGCCTCTTACCTGCCAGGGTGGTGCCGCATCCCACCCCCATCATTGAGCTTGCCTCATGTGTCTCAGCACAGTCTTTTACAGCAAAAATGCATGTCACCTCCTCCTAAAGGCTTTCCATGGCCCACCCACCCAGATTCCTCCTTTATTGTGCAGACTCTTTCCTAACCCACACCTCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5739386 354 +   6154872 ATGGGAGGCAGCTTTTAACACCAGACAGGGTCCTGTGATGCAGAGGTGATTGTGCCATCCCATAAAGTCCCAGGGCACTGTCTGCCAATGAGACCACCAACTTGCTTGCCCTAAATGGCCACATCCCCTAAACGGCCCTCCTGCCATTGTCTGTGCTCAGAAAACCCTCAGTTTCTGCCTCTTACCTGCCAGGGTGGTGCCGCATCCTACCCCCATCATTGAGCTTGCCTCATGTGTCTCAGCACAGTCTTTTACAGCAAACATGCATGTCACCTCCTCCTAAAGGCTTTCCGTGGCCCACCCACCCAGATGCCTCCTTTATTGTGCAGACTCTTTCCTAACCCACACCTCATC
i gorGor5.CYUI01015250v1   C 0 C 0
e mm10.chr17               57868385 52091 -  94987271 T
e proCoq1.NW_012152574v1     558598 323 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e otoGar3.GL873550            14127 908 +  18854210 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=23368.000000
s hg38.chr6_GL000254v2_alt   725269 26 +   4827813 TTAATTTATTTGCCTTCAATTCTGGG
s panTro5.chr6             29699311 26 + 175400573 TTAATTTATTTGCCTTCAATTCTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29929132 26 + 173848474 TTAATTTATTTGCCTTCAATTCTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5739740 26 +   6154872 TTGATTTATTTGCCTTCAATTCTGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     558921 26 +    730504 TTAATTTATTTGCTTTCAATTCTGGG
i proCoq1.NW_012152574v1   I 323 I 606
e mm10.chr17               57868385 52091 -  94987271 T
e canFam3.chr35            26182574 20218 +  26524999 I
e otoGar3.GL873550            14127 908 +  18854210 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376  1 +     27237 I

a score=325647.000000
s hg38.chr6_GL000254v2_alt   725295 610 +   4827813 CGGCGGTGTTGGGGAGGGTCTCAATTTTCCCATGTATTTCCCAGTGTTTATTGAATACATGAGGCCATACTCTTCTAGTCTCTCTGCTTCTCATGCTAGGAACTGAACCGACCAGCCTATACTTTAAGGCTTGTTATTTCACTGACTAAGGAAAGGCTACTTAAGAGGGCAAGCTCAGACATACATAATCTGGAGTGGATCTTCCATGGGAAAACACGTATATAACAGAAATTATTGGCAAAACTATAAGTATGGTCTACAGAGTAAGTAATAATATTTTATTATTTATTTAGTTAGttttgagacagagtttctctctcgttgcccaggctggagtgtaatggcacgatctcagctcactgcaacttccacctcccaggttgaaacgattctcctgcttcagcctcctgagtagctgggattacagacacccaccaccacaccccgctaatttttttttttttttttttttttttttgtagagacgaggtttcaccatgttgaccaggctgatctcaaacatctgacctcaggtgatccgcccgcctcagcctcccaaagtgctgggattataggcgtgagccaccacacccggccaataatactttat
s panTro5.chr6             29699337 601 + 175400573 CGGCGGTGTTGGGGAGGGTCTCAATTTTCCCATGTATTTCCCAGTGTTTATTGAATACATGAGGCCATACTCTTCTAGTCTCTCTGCTTCTCATGCTAGGAACTGAACCGACCAGCCTATACTTTAAGGCTTGTTATTTCACTGACTAAGGAAAGGCTACTTAAGAGGGCAAGCTCAGACATACATAATCTGGAGTGGATCTTCCATGGGAAAACACGTATATAACAGAAATTATTGGCAAAATTATAAGTATGGTCTACAGAGTAAGTAATAATATTTTATTATTTATTTAGTTAGttttgagacagagtttctctctcgttgcccaggctggagtgtaatggcacgatctcagctcactgcaacttccacctcccagtttgaaacgattctcctgcttcagcctcctgagtagctgggattacagacacccaccaccacaccccgctaattttttttttttttttct---------gtagagacaaggtttcaccatgttgaccaggctggtctcaaacatctgacctcaggtgatccacccgccttgacctcccaaagtgctgggattataggcgtgagccaccacacctggccaataatactttat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29929158 603 + 173848474 CGGTGGTGTTGGGGAGGGTCTCAATTTTCCCATGTATTTCCCAGTGTTTATTGAATACATGAGGCCATACTCTTCTAGTCTCTCCGCTTCTCATGCTAGGAACTGAACCGACCAGCCTATACTTTAAGGCTTGTTATTTCACTGACTAAGGAAAGGCTACTTAAGAGGGCAAGCTCAGACATACATAATCTGGAGTGGATCTTCCATGGGAAAACACGTATATAACAGAAATTATTGGCAAAATTATAAGTATGGTCCACAGAGTAAGTAATAATATTTTATTATTTATTTAGTTAGttttgagaaagagtttctctctcgttgcccaagctggagtgtaatggcacgatctcagctcactgcaacttccacctcccaggttgaaacgattttcctgcttcagcctcctgagtagctgggattacagacacccaccaccacaccccgcaattttttttttttttttttt-------tgttagagacaaggtttcaccatgttgatcaggctggtctcaaacatctgacctcaggtgatccacccgccttgacctcccaaagtgctgggattataggcgtgagccaccacacctggccaataatactttat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5739766 608 +   6154872 CGGCGGTGTTGGGGAGGGTCTCAATTTTCCCATATATTTCCCAGTGTTTATTGAATACATGAGGCCATACTCTTCTAGTCTCTCCGCTTCTCATGCTAGGAACTGAACCGACCAGCCTATACTTTAAGGCTTGTTATTTCACTGACTAAGGAAAGGCTACTTAAGAGGGCAAGCTCAGACATACATAATCTGGAGTGGATCTTCCATGGGAAAACACGTATATAACAGAAATTATTGGCAAAATTACAAGTATGGTCTACAGAGTAAGTAATAATATTTTATTATTTATTTAGTTAGttttgagacagagtttctctctcattgcccaggctggagtgtaatggcacgatctcagctcactgcaacttccacctcccagattgaaatgattctcctgcttcagcctcctgagtagctgggattacagacacccaccgccacaccccactaatttttttttttttttgta--tttttttgtagagacgaggtttcaccatgttgaccaggctgatctcaaacatctgacctcaggtgatccgcccgcctcggcctcccaaagtgctgggattataggcgtgagccaccacacccggccagtaatactttat
i gorGor5.CYUI01015250v1   C 0 C 0
e mm10.chr17               57868385 52091 -  94987271 T
e proCoq1.NW_012152574v1     558947 606 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e otoGar3.GL873550            14127 908 +  18854210 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=258517.000000
s hg38.chr6_GL000254v2_alt   725905 386 +   4827813 caatgttggctttcctgtatttagtaactgagctgtttttacactaaaaaaaaattc---tatcttagaaacatgaagaagtgaagaggcattatatatacaactcactgttcagtagctcagggtaaatataattgcatatgcaaagataaagatgtaatgataaaaa--tgtcaagtgttagcactttactaatatagataaagaacattcagaaa-ttctttaaattactcttaaaattt----gggggtatgaatttttataaaaataaTGTTTTAAATCTTAAATAGTGAATAGAATTAAGAAAGTAACAAATTCTAATTCCTTCCTTTTTTTCTTTAAATTCTTCTAGATCCTGAATAATTTCTACTTAAACGTCCCAATATCAACTCTC
s panTro5.chr6             29699938 385 + 175400573 caatgttggctttcctgtatttagtaactgagctgtttttacactaaaaaaaatttc---tatcttagaaacatgaagaagtgaagaggcattatatatacaactcactgttcagtagctcagggtaaatataattgcatatgtaaagataaagatgtaatgataaaaa--tgtcaagtgttagcactt-actaatatagataaagaacattcagaaa-ttctttaaattacccttaaaattt----GGGGGTATGAATTTTTATAAAAACAATGTTTTAAATCTTAAATAGTGAATAGAATTAAGAAAGTAATAAATTCTAATTCCTTCCTTTTTTTCTTTAAATTCTTCTAGATCCTGAATAATTTCTACTTAAACGTCCCAATATCAACTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29929761 385 + 173848474 caatgttggctttcctgtatttagtaactgagctgtttttacactaaaaaaaatttc---tatcttagaaacatgaagaagtgaagaggcattatatatacaactcactgttcagtagctcagggtaaatataattgcatatgtaaagataaagatgtaatgataaaaa--tgtcaagtgttagcactt-actaatatagatgaagaacattcagaaa-ttctttaaattactcttaaaattt----GGGGGTATGAATTTTTATAAAAATAATGTTTTAAATCTTAAATAGTGAATAGAATTAAGAAAGTAACAAATTCTAATTCCTTCCTTTTTTTCTTTAAATTCTTCTAGATCCTGAATAATTTCTACTTAAACGTCCCAATATCAACTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5740374 385 +   6154872 caatgttggctttcctgtatttagtaactgagctgtttttacactaaaaaaaatttc---tatcttagaaacatgaagaagtgaagaggcattatatatacaactcactgttcagtagctcagggtaaatataattgcatatgtaaagataaagacgtaatgataaaaa--tgtcaagtgttagcactttactaatatagataaagaacattcagaaa-ttctttaaattactcttaaaattt-----GGGGTATGAATTTTTATAAAAATAATGTTTTAAATCTTAAATAGTGAATAGAATTAAGAAAGTAACAAATTCTAATTCCTTCCTTTTTTTCTTTAAATTCTTCTAGATCCTGAATAATTTCTACTTAAATGTCCCAATATCAACTCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873550            15035 344 +  18854210 cAATGTTGGCTTTCTTA-AAGCAacaactgtgctgtttttacat--aaaagaatttcctttttcttagaaa-------aagtgaagaagccttatatagggaacctactgtacaatagcttataataaatctgattacacgcataaagagaaagatgaaatgataaaaaagtgtcaaatattaacaatctattactacacataaagagtgcacaggaacttttttagactactcttggaaattccctataggtttaaatttttatttaaaaaATATTTTAAATCTCAAATTGTGACTAGAATTAAGGAAATATTAAAC--------------------------ATTC--------------TACCTCCTACTTAAATG--CCTGTCTCAACTCAT
i otoGar3.GL873550         I 908 C 0
e mm10.chr17               57868385 52091 -  94987271 T
e proCoq1.NW_012152574v1     558947 606 +    730504 I
e canFam3.chr35            26182574 20218 +  26524999 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=235686.000000
s hg38.chr6_GL000254v2_alt   726291 252 +   4827813 TATTTTGCTATTGACATAATCTTATTTGAGAGGCAAAAAATTT-TAAAAATTATATCATCTTTTTAATTTCTAAGCCCCAGAACAAGACAATT-GGCAGCATTTTTTT-CATGTCATTTTGCTACATTCTACATAATGTTAAGTTGAGGTTAGGGATTTTCATTTGTGGAGGAAGCTCTTACATTTAGTTTAATGAATCATAATTTTTTT----AATGGAGAAGGAACAAAAT-ACCTCATTGATTTTTCTATGAGTGGA
s panTro5.chr6             29700323 253 + 175400573 TATTTTGCTATTGACATAATCTTATTTGAGAGGCAAAAAATTT-TTAAAATTAAATCATCTTTTTAATTTCTAAGCCCCAGAACAAGACAATT-GGCAGCATTTTTTTTCATGTCATTTTGCTACATTCTACATAATGTTAAGCTGAGGTTAGGGATTTTCATTTGTAGAGGAAGCTCTTACATTTAGTTTAATGAATCATGATTTTTTT----AATGGAGAAGGAACAAAAT-ACCTCATTGATTTTTCTATGAATGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29930146 252 + 173848474 TATTTTGCTATTGACATAATCTTATTTGAGAGGCAAAAAATTT-TAAAAATTAAATCATCTTTTTAATTTCTAAGCCCCAGAACAAGACAATT-GGCAGCATTTTTTT-CATGTCATTTTGCTACATTCTACATAATGTTAAGTTGAGGTTAGGGATTTTCATTTGTAGAGGAAGCTCTTACATTTAGTTTAATGAATCATGATTTTTTT----AATGGAGAAGGAACAAAAT-ACCTCATTGATTTTTCTATGAATGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5740759 252 +   6154872 TATTTTGCTATTGACATAATCTTATTTGAGAGGCAAAAAATTT-TAAAAATTATATCATCTTTTTAATTTCTAAGCCCCAGAACAAGACAATT-GGCAGCATTTTTTT-CATGTCATTTTGCTACATTCTACATAATGTTAAGTTGAGGTTAGGGATTTTCATTTGTAGAGGAAGCTCTTACATTTAGTTTAATGAATCATAATTTTTTT----AATGGAGAAGGAACAAAAT-ACCTCATTGATTTTTCTATGAGTGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     559553 255 +    730504 TATTTTGCTATTGATATAATTTTGTTTGAAAGGAAAAAGATTTTTTAAAATTATATCGTCTTTTTTATTTCTAAGCCCCAGAATAAGACAAATGGGTAGCATTTGTT--CATCTTATTTTGCTAGATTGCA---AATGTTAAGTTGAGGTTATGGCTTTCCATTTGTGGAGAAAGCTCATGTATTTAGTTCAATAAATCATAATTATTTTTTAAAAGGGGGAAGGCAGAAAATCACCTAATTGATCTTTCTGTGGGTGGA
i proCoq1.NW_012152574v1   I 606 C 0
s otoGar3.GL873550            15379 239 +  18854210 TGTTTTGCTATTGATATAATCTTATTTGAAACATAAATTATTTCTAAAAAGCATATC----TTTTTATTTCTAAGCCTCAGAACAAAAAAATTGGGTAGTATTTTTT--CATCTTATTTTGCTAAACTGC-----ACGTAATGTTGAAGTTAGAGCTTTCCATTTGTAAACAAAGCTCATGTATTCACTTCAATAAATCATAAGTATGTTGTGCA----------CCAAATATTACATTAAAAATCTTTTAAAAAGTGAA
i otoGar3.GL873550         C 0 I 675
e mm10.chr17               57868385 52091 -  94987271 T
e canFam3.chr35            26182574 20218 +  26524999 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=1000.000000
s hg38.chr6_GL000254v2_alt   726543 1 +   4827813 G
s panTro5.chr6             29700576 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29930398 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5741011 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     559808 1 +    730504 G
i proCoq1.NW_012152574v1   C 0 C 0
e mm10.chr17               57868385 52091 -  94987271 T
e canFam3.chr35            26182574 20218 +  26524999 I
e otoGar3.GL873550            15618 675 +  18854210 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376 1 +     27237 I

a score=96374.000000
s hg38.chr6_GL000254v2_alt   726544 116 +   4827813 TTAATACACACAGCGGAGAAATCTCTTTGTTAATTC-TACACTCTGCCTCTGATTGACACCTCTGCAAACAAAGATAA-------------AGTAGATAAAACATGAATAATTCCAGGAAACTTATGCCC
s panTro5.chr6             29700577 116 + 175400573 TTAATACACACAGGGGAGAAATCTCTTTGTTAATTC-TACACTCTGCCTCTGACTGACACCTCTGCAAACAAAGATAA-------------AGTAGATAAAACATGAATAATTCCAGGTAACTTATGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29930399 116 + 173848474 TTAATACACACAGGAGAGAAATCTCTTTGTTAATTC-TACACTCTGCCTCTGACTGACACCTCTGCAAACAAAGATAA-------------AGTAGATAAAACATGAATAATTCCAGGTAACTTATGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5741012 116 +   6154872 TTAATACACACAGCGGAGAAATCTCTTTGTTAATTC-TACACTCTGCCTCTGATTGACACCTCTGCAAACAAAGATAA-------------AGTAGATAAAACATGAATAATTCCAGGAAACTTATGCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     559809 117 +    730504 TCATTTCACACAGAGGAAATATTTCCTCCTTAATTTATGCATTTTGCCTCTGGTTGGCTCCCCTACAAACAAGAATAA-------------CGTACATAAAACATGAATAATTCTAGGAAATTTACGCCC
i proCoq1.NW_012152574v1   C 0 I 8457
s canFam3.chr35            26202792 128 +  26524999 ttaaaaaaaaTAAAGGA-AAACCTCTCCATAGACAC-AACATTCTGTCTCAAATCAGGTCCCTTGCAAAAAAAAAAAAAAAAGGCACAAAGAATACATGTAGTATGAATAGCTCTCCAAAATTCATCTGA
i canFam3.chr35            I 20218 C 0
e mm10.chr17               57868385 52091 -  94987271 T
e otoGar3.GL873550            15618 675 +  18854210 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=66940.000000
s hg38.chr6_GL000254v2_alt   726660 123 +   4827813 ----CAGAATACAGAATAATTTTGCATACATATGAATAGTAGGGCAATTC--TATCAA---ATGATTCTTTTCTAATTCTTT------ATGGATGTACATAATGAAATATTCAGAACTACCACAACATTTAGAATAAG-
s panTro5.chr6             29700693 123 + 175400573 ----CAGAATACAGAACAATTTTGCATACATATGAATAGTAGGGAAATTC--TATCAA---ATGATTCTTTTCTAATTCTTT------ATGGATGTACATAATGAAATATTCAGAACTACCACAACATTTAGAATAAG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29930515 123 + 173848474 ----CAGAATACAGAATAATTTTGCATACATATGAATAGTAGGGAAATTC--TATCAA---ATGATTCTTTTCTAATTCTTT------ATGGATGTACATAATGAAATATTCAGAACTACCACAACATTTAGAATAAG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5741128 122 +   6154872 ----CAGAATACAGAATAATTTTGCATACATATGAATAGTAGGGCAATTC--TATCAA---ATGATTCTTTTCTAATTCTTT------ATGGATGTACATAATGAAATATTCAGAACTACCACAACA-TTAGAATAAG-
i gorGor5.CYUI01015250v1   C 0 C 0
s canFam3.chr35            26202920 133 +  26524999 CAAATAGAGAAATGATCAACTCTACAGAGATAGCTACAACCTAAAAATCCATTATAAAAATACGTTACTTTGCTGGTTCTTCCAACAAATGCATAGGGACAATACAACACTTGGA------ACAGCACTCAGAACACAG
i canFam3.chr35            C 0 C 0
e mm10.chr17               57868385 52091 -  94987271 T
e proCoq1.NW_012152574v1     559926 8457 +    730504 I
e otoGar3.GL873550            15618 675 +  18854210 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=18786.000000
s hg38.chr6_GL000254v2_alt   726783 26 +   4827813 ATAGAGCCTAACAATTTATTGTTGAA
s panTro5.chr6             29700816 26 + 175400573 ATAGAGCCTAACAATTTATTGTTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29930638 26 + 173848474 ATAGAGCCTAACAATTTATTGTTGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5741250 26 +   6154872 ATAGAGCCTAACAATTTATTGTTGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s mm10.chr17               57816294 26 -  94987271 ATggtgctcaacaaatgtttgttgaa
i mm10.chr17               T 52091 C 0
s canFam3.chr35            26203053 24 +  26524999 ACGCATCC--ACCATGTGGTCCTGAA
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     559926 8457 +    730504 I
e otoGar3.GL873550            15618 675 +  18854210 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376  1 +     27237 I

a score=9465.000000
s hg38.chr6_GL000254v2_alt   726809 14 +   4827813 TTAATGAAGATCGG
s panTro5.chr6             29700842 14 + 175400573 TTAATGAAGATCGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29930664 14 + 173848474 TTAATGAAGATCGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5741276 14 +   6154872 TTAACGAAGATCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873550            16293 14 +  18854210 TTAATGAAGAGTAA
i otoGar3.GL873550         I 675 C 0
s mm10.chr17               57816320 14 -  94987271 acaatgaaAACTAA
i mm10.chr17               C 0 I 4
s canFam3.chr35            26203077  8 +  26524999 GTAATCAG------
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     559926 8457 +    730504 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376  1 +     27237 I

a score=20196.000000
s hg38.chr6_GL000254v2_alt   726823 5 +   4827813 -TTAAT
s panTro5.chr6             29700856 5 + 175400573 -TTAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29930678 5 + 173848474 -TTAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5741290 5 +   6154872 -TTAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30047605 5 + 172585720 -tTAAT
i rheMac8.chr4             N 0 C 0
s macNem1.NW_012011356v1    2755950 5 -   2996164 -tTAAT
i macNem1.NW_012011356v1   N 0 C 0
s cerAty1.NW_012002711v1     509353 5 +    766320 -tTAAT
i cerAty1.NW_012002711v1   N 0 C 0
s chlSab2.chr17            28965428 5 -  71996105 -tTAAT
i chlSab2.chr17            N 0 C 0
s manLeu1.NW_012099233v1     142388 5 +    290775 -tTAAT
i manLeu1.NW_012099233v1   N 0 C 0
s otoGar3.GL873550            16307 5 +  18854210 -TTAAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57816338 5 -  94987271 -TCAAT
i mm10.chr17               I 4 C 0
s canFam3.chr35            26203085 5 +  26524999 CTCAG-
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     559926 8457 +    730504 I
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376 1 +     27237 I

a score=33959.000000
s hg38.chr6_GL000254v2_alt   726828 7 +   4827813 TAATCCA
s panTro5.chr6             29700861 7 + 175400573 TAATCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29930683 7 + 173848474 TAATCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5741295 7 +   6154872 TAATCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30047610 7 + 172585720 TAATGCA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1    2755955 7 -   2996164 TAATGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     509358 7 +    766320 TAATGCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28965433 7 -  71996105 TAATGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     142393 7 +    290775 TAATGCA
i manLeu1.NW_012099233v1   C 0 C 0
s proCoq1.NW_012152574v1     568383 7 +    730504 TAATCCA
i proCoq1.NW_012152574v1   I 8457 C 0
s otoGar3.GL873550            16312 7 +  18854210 GAATCCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57816343 7 -  94987271 GAATTCA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26203090 7 +  26524999 TACTGCA
i canFam3.chr35            C 0 C 0
e colAng1.NW_012115566v1    2578503 24205 -   3067355 I
e macFas5.chrUn_KE146120      19376 1 +     27237 I

a score=4033022.000000
s hg38.chr6_GL000254v2_alt   726835 626 +   4827813 TGTTTTACATCAGCTTTCTTTGCCCTCAACCAGGAAGTCAGAGGCACCAATGTGAGGTTCCACCTGCTTTCCAGCACATTCTTGGTTTCCTCACTTCTGCTAGACAACGTTTGATCAGAAGGAACAGGGAACGAGAAGGAGCTGCTGGAT-----GACGATAAGCCTGGGAAAGGGAGGCTGGGTGAGCAGAGACAGAAAA-GAAACACCTACCTGCTGTGACCTCACAAACACCCAGGCTGAGTTTTGATAAGAC-AGGTTGAATCACAC-TGGGGTGACAGCCTCATCCCTCCAGGTACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTTGTGGTTGTCTTCACTTCCTAC-------CTCTTGACCCTGGTGGGCAACACACTCATCATCCTGCTGTCTGTACTGTACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCTGACCTCTCCTTCTTGGACCTCTGCTTTACCACAAGTTGTGTCCCCCAGATGCTGGTCAACCTCTGGGGCCCAAAGAAGACCATCAGCTTCCTGGGATGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGG
s panTro5.chr6             29700868 626 + 175400573 TGTTTTACATCAGCTTTCTTTGCCCTCAACCAGGAGGTCAGAGGCACCAATGTGAGGTTCCACCTGCTTTCCAGCACATTCTTGGTTTCCTCACTTCTGCTAGACAACGTTTGATCAGAAGGAACAAGGAACGAGAAGGAGCTACTGGAT-----GATGATAAGCCTGGGAAAGGGAGGCTGGGCGAGCAGAGACAGAAAA-GAAACACCCACCTACTGTGACATCACAAACACCCAGGCTGAGTTTTGATAAGAC-AGGTTGAATCACAC-TAGGGTGACAGCCTCATACCTCCAGGTACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAAAACCCAGCACTGGAAAGGACTCTCTTTGTGGTTGTCTTCACTTCCTAC-------CTCTTGACCCTGGTGGACAACACACTCATCATCCTGCTGTCTGTACTGTACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCTGACCTCTCCTTCTTGGACCTCTGCTTTACCACGAGTTGTGTCCCCCAGATGCTGGTCAACCTCTGGGGCCCAAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29930690 626 + 173848474 TGTTTTACATCAGCTTTCTTTGCCCTCAACCAGGAGGTCAGAGGCACCAATGTGAGGTTCCACCTGCTTTCCAGCACATTCTTGGTTTCCTCACTTCTGCTAGACAACGTTTGATCAGAAGGAACAAGGAACGAGAAGGAGCTACTGGAT-----GATGATAAGCCTGGGAAAGGGAGGCTGGGCGAGCAGAGACAGAAAA-GAAACACCCACCTACTGTGACATCACAAACACCCAGGCTGAGTTTTGATAAGAC-AGGTTGAATCACAC-TAGGGTGACAGCCTCATCCCTCCAGGTACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTTGTGGTTGTCTTCACTTCCTAC-------CTCTTGACCCTGGTGGACAACACACTCATCATCCTGCTGTCTGTACTGTACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCTGACGTCTCCTTCTTGGACCTCTGCCTTACCACGAGTTGTGTCCCCCAGATGCTGGTCAACCTCTGGGGCCCAAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5741302 626 +   6154872 TGTTTTACATCAGCTCTCTTTGCCCTCAACCAAGAAGTCAGAGGCACCAATGTGAGGTTCCACCTGCTTTCCAGCACATTCTTGGTTTCCTCACTTCTGCTAGACAACGTTTGATCAGAAGGAACAGGGAACGAGAAGGAGCTGCTGGAT-----GATGATAAGCCTGGGAAAGGGAGGCTGGGCGAGCAGAGACAGAAAA-GAAACACCCACCTACTGTGACATCACAAACACCCAGGCTGAGTTTTGATAAGAC-AGGTTGAATCACAC-TGGGGTGACAGCCTCATCCCTCCAGGTACAAACAAGAACAGGCCATGGTTAACCAAAGCTCTCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACTCCCAGCACTGGAAAGGACTCTCTTCGTGGTTGTCTTCACTTCCTAC-------CTCTTGACCCTGGTGGGCAACACACTCATCATCCTGCTGTCTGTACTGTACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCTGACCTCTCCTTCTTGGACCTCTGCTTTACCACGAGTTGTGTCCCCCAGATGCTGGTCAACCTCTGGGGCCCAAAGAAGACCATCAGCTTCCTGGGATGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30047617 626 + 172585720 TATTTTAAATCAGCCTCCTCTGCCCTCACCCAGGAAGTCAGAGGCACCAGTGTGAGTCTCCATCCACTGTCCAGTACATTCATGGTTTCCTCATTCTCACTAGGCAATGTTTGACCAGAAAGAACAGGGAACGAGAAGGAGCTGCTGGAT-----GGTGATGAGCCTGGGAAATGGAGGCTGGGTGAGCAGAGACAGAAGA-GAAACACCCACCTGCTGTGACCTCACAAACACCCAGGCTGAGTTTTGATAAGAC-AAGTTGAATCACAC-TGGGGCGACAGCCTCATCCTTCCAGGTACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGGCTCTCTTTGTGGTTGTCTTCACTTCCTAC-------CTCCTAACCCTGGTGGCCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGACTTGTGTCCCCCAGATGCTGGTTAACCTCTGGGGCCCAAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1    2755962 626 -   2996164 TATTTTAAATCAGCCTCCTCTGCCCTCACCCAGGAAGTCAGAGGCACCAGTATGAGTCTCCATCCGCTGTCCAGTACATTCATGGTTTCCTCATTCTCACTAGGCAATGTTTGACCAGAAAGAACAGGGAACGAGAAGGAGCTGCTGGAT-----GGTGATGAGCCTGGGAAATGGAGACTGGGTGAGCAGAGACAGAAGA-GAAACACCCACCTGCTGTGACCTCACAAACACCCAGGCTGAGTTTTGATAAGAC-AAGTTGAATCACAC-TGGGGCGACAGCCTCATCCTTCCAGGTACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTTGTGGTTGTCTTCACTTCCTAC-------CTCCTAACCCTGGTGGCCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGACTTGTGTCCCCCAGATGCTGGTTAACCTCTGGGGCCCAAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     509365 626 +    766320 TATTTTAAATCAGCCTCCTCTGCCCTCACCCAGGAAGTCAGAGGCACCAGTGTGAGTCTCCATCCACTGTCCAGTACATTCATGGTTTCCTCATTCTCACTAGGCAATGTTTGACCAGAAAGAACAGGGAACGAGAAGGAGCTGCTGGAT-----GGTGATGAGCCTGGGAAATGGAGGCTGGGTGAGCAGAGACAGAAGA-GAAACACCCACCTGCTGTGACCTCACAAACACCCAGGCTGAGTTTTGATAAGAC-AAGTTGAATCACAC-TGGGGCGACAGCCTCATCCTTCCAGGTACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTTGTGGTTGTCTTCACTTCCTAC-------CTCCTAACCCTGGTGGGCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATATACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGACTTGTGTCCCCCAGATGCTGGTTAACCTCTGGGGCCCAAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28965440 626 -  71996105 TATTTTAAATCAGCCTCCTTTGCCCTCACCCAGGAAGTCAGAGGCACCAGTGTGAGTCTCCATCCACTGTCCAGTACATTCATGGTTTCCTCATTCTCACTAGACAATGTTTGACCAGAAAGAACAGGGAACGAGAAGGAGCTGCTGGAT-----GGTGATAAGCCTGGGAAATGGAGGCTGGGTGAGCAGAGACAGAAGA-GAAACACCCACCTGCTGTGACCTCACAAACACCCAGGCTGAGTTTTGATAAGAC-AAGTTGAATCACAC-TGGGGTGACAGCCTCATCCTTCCAGGTACAAACAAGAAAAGGTCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTTGTGGTTGTCTTCACTTCCTAC-------CTCCTAACCCTGGTGGGCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGACTTGTGTCCCCCAGATGCTGGTTAACCTCTGGGGCCCAAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     142400 626 +    290775 TATTTTAAATCAGCCTCCTCTGCCCTCACCCAGGAAGTCAGAGGCACCAGTGTGAGTCTCCATCCACTGTCCAGTACATTCATGGTTTCCTCATTCTCACTAGGCAATGTTTGACCAGAAAGAACAGGGAACGAGAAGGAGCTGCTGGAT-----GGTGATGAGCCTGGGAAATGGAGGCTGGGTGAGCAGAGACAGAAGA-GAAACACCCACCTGCTGTGACCTCACAAACACCCAGGCTGAGTTTTGATAAGAC-AAGTTGAATCACAC-TGGGGCGACAGCCTCATCCTTCCAGGTACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTTGTGGTTGTCTTCACTTCCTAC-------CTCCTAACCCTGGTGGGCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATACACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGACTTGTGTCCCCCAGATGCTGGTTAACCTCTGGGGCCCAAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2602708 622 -   3067355 TGTTTTAAATCAGCCTCCTCTGCCCTCACCCAGGAAGTCAGAGGCACCAGTGTGAGTCTCCATCCGCTGTCCAGTACATTCATGGTTTCCTCATTCTCACTAGACAATGTTTGACCAGAAAGAACAGGGAACGAGAAGGAGCCGCTGGAT-----GGTGATAAGCCTGGGAAAAGGAGGCTGGGTGAGCAGAGACAGAAGA-GAAGCACCCACCTGCTGTGACCTCACAAACACCCAGGCTGAGTTTTGATAAGGC-AAGTTGAATCACAC-TGGGGTGACAGCCTCATCCTTCCAGGTACAAACAAGAAAAGACCATGGTTAACCAAAGCTCCCCCATGTGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTCATGGTTGTCTTCACTTCCTAC-------CTCCTAACCCTGGTGG-CAACATACTCATCATCCTGCTGTCTGTGCTGAACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGAGTTGTGTCCCCCAGATGTTGGTTAACCTCTGGGGCCCA---AAGACCATCAGCTTCCTGGGCTGCTCTGTTCAGCTCTTCATCTTCCTGTCCCTGGGG
i colAng1.NW_012115566v1   I 24205 C 0
s proCoq1.NW_012152574v1     568390 609 +    730504 TGTTTTACATGAGCCTCCTTTGTTCTCAATCAGAAAGTCAGAGGTATCAGTGTGAGGCTCCATCTGCTTTCCAACACATTCATGGTTTCCTCATTCCCACTAGACAACGTTTGACCAGGAGGAACAGGGGAAGAAAAGGAGTGGCTGG-------GAAAAAGAGGCTGGGAGA-GCAG-------------AGGCAGAAGA-GAAACATCCACCCGGTGTGACCTCACAAGCACCGGGG-TGCGTTGTGATAAAAC-ACATTGAATCACAC-TAGTCTGACAGCCTCATCCCTCCAGGTCTGGACAAGAACAGGACATGGGCAACCACAGCTCCCCAGAGGGCTTCCTCCTTCTGGGCTTCTCTCAACACCCAGGACTGGAAAAGATTCTCTTCCTGGTTGTCTTAACTTCCTAC-------CTCCTGACCCTCGTGGGCAACACAGTCATCATCGTGCTGTCTGTGTTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACCAGCTGTGTCCCCCAGATGCTGGTCAACCTCTGGGGCCCAAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCGCTGGGG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            16319 616 +  18854210 TATTTTATATCCACTTTCTTTGCTCTCAACCAGAAAGTCAGA-GTAGCAGCGTGAAGCTCCAT----TGCCCAGCACCTTTTTGGTTTCTTTGCTCCTAATAGACAAGATTTGACCAAGAGGAACAGAAGAAGAGCAGGAGCTGCAGGAT-----GCTGATGATCCTGGGAAG-GGAGCCTGCATGGCT--AGACAGAAGA-GAAATGTCCACCTGATGTAA-CTTATAAGCACCCAGG-TGAGTATTGATAGGAC-AGGTTGAATCACAC-TAGTCTAACAGGCTCATCCCTCCAGGTCCAGACAAAAACAGGCCATGGGCAACCAAAGCTCCCCAGAGGGCTTCCTTCTTCTGGGCTTCTCTGAACACCCAGGGCTGGAAAAGATTCTCTTCCTGGTTGTCTTAACTGCCTAC-------CTCCTGACCCTGGTGGGCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAAGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACAAGTTGTGTCCCCCAGATGCTGGTCAACCTCTGGGGCCCAAAGAAAACCATCAGCTTCCTGGGCTGCTCTGTGCAGCTCTTCATCTTCCTGTCCCTGGGG
i otoGar3.GL873550         C 0 I 21
s mm10.chr17               57816350 593 -  94987271 TGTTATTCGTCAGCCTCCTTTGCCCTCAGGTGGGAAGTGAGATGTGCCAGGGGAAGAATCCACCCATTTCCCAGGACTTTCCTGACTTCCTCTCAGCCACGAG--AACATTTGACCAGAAGGAATAGGGAAAAGGAGGAAGC----------------------------------ACTCTTGGAGAGGAGAAGGAGAAGA-GAAACATCCACCTCACATGTTTTGACAAGTATGTAGAGTGTGCTTTTACAAAACAAAGTAAAATAATACATTGTCTGACAGTCTCATCCTGCCGACTAGACACGG----AGATCATGGTCAACCAGAGCTCCCCTGTGGTCTTCTTCCTGCTGGGCTTCTCTGAACACCCACAACTGGAAAAGGTTCTGTTTGTGGTTGTCTTGTGCTCCTAC-------CTCCTCACCCTCTTAGGAAACACACTCATCCTCTTGCTGTCCACCCTGGATCCCAGGCTCCACACTCCAATGTACTTCTTCCTCTCTAACCTCTCCTTCTTGGACCTCTGCTTCACCACAACCTGTGTCCCCCAGATGCTGTTCAACCTCTGGGGCCCCGAAAAGACCATCAGCTTCCTGGGATGCTTTGTCTAGCTCTTCATCTTCATGTCCCTGGGT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26203097 611 +  26524999 TGCTTTCCAGTAGCCTCCGCTGTGCTCAGCCCATCAGCCTGAGGCCCCCGTGTCCAGCACTGCCTGTCCCCCAGCAAGTCCTGCTGCCCCCAAAGCCTGCTGGACAGCA-CTGCCCAGGAGGAACATGAA--GGGAAGGAGGTGCAGAGTGTGGAGGTGGAGTGCCTGGTAAA-GGACAC------GGTGGAGACAGAAAAGGAGATATGTACCTGGGGTGAGCTGACCAGTACCAGGG--GAGGTTTGGGACAAC-AGCTCAGGACACAC-TG--------CCCTCATCCTTCCAGGCTGGGGCAGGAAA-----ATGGGCAACCAGAACTCCCCTGGGGGCTTCCTCCTTCTGGACTTCTCTGAACACCCAGGGCTAGAGAGAATCCTTTTTGTGGTTGTCCTCACTTCCTGTTGTGTTGTTCCTCACTCTGGTGAGCAACACCCTCATCATCCTGCTGTCTGTGCGGGACCCAAGGCTCCACTCCTCGATGTACTTTTTCCTCTCCAACCTGTCCTTCTTGGACCTGCGCTTCACCACAAGCTCCGTCCCCCAGCTGCTGGTCAACCTCTGCAGCCCA---AAGACCACCAGCTTCCTTGGCTGCTCTGTTCAGCTCTTCATCTTTCTGTTCCTGGGG
i canFam3.chr35            C 0 C 0
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=174938.000000
s hg38.chr6_GL000254v2_alt   727461 28 +   4827813 ACCACTGAGTGCATCCTCCTGACAGTGA
s panTro5.chr6             29701494 28 + 175400573 ACCACTGAGTGCATCCTCCTGACAGTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29931316 28 + 173848474 ACCACTGAGTGCATCCTCCTGACAGTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5741928 28 +   6154872 ATCACTGAGTGCATCCTCCTGACAGTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30048243 28 + 172585720 ACCACTGAGTGCATCCTCTTGACAGTGA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1    2756588 28 -   2996164 ACCACTGAGTGCATCCTGTTGACAGTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     509991 28 +    766320 ACCACTGAGTGCATCCTCTTGACAGTGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28966066 28 -  71996105 ACCACTGAGTGTATCCTCTTGACAGTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     143026 28 +    290775 ACCACTGAGTGCATCCTCTTGACAGTGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2603330 28 -   3067355 ACCACTGAGTGCATCCTCTTGACAGTGA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     568999 28 +    730504 ACCACTGAGTGCATCCTCCTGTCAGTGA
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57816943 28 -  94987271 ACAACAGAGTGCATCCTCCTGACTGTAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26203708 28 +  26524999 ACCACAGAGTGCATCCACCTGAACATGA
i canFam3.chr35            C 0 C 0
e otoGar3.GL873550            16935 21 +  18854210 I
e macFas5.chrUn_KE146120      19376  1 +     27237 I

a score=4006176.000000
s hg38.chr6_GL000254v2_alt   727489 573 +   4827813 TGGCCTTTGACCGATACGTGGCTGTCTGCCAGCCCCTCCACTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTTATGAGTCTGGTTCAATCGATAGTCCAGACACCATCCACCCTCCACTTGCCCTTCTGTCCCCACCAGCAGATAGATGACTTTTTATGTGAGGTCCCATCTCTGATTCGACTCTCCTGTGGAGATACCTCCTACAATGAAATCCAGTTGGCTGTGTCCAGTGTCATCTTCGTGGTTGTGCCTCTCAGCCTCATCCTTGCCTCTTATGGAGCCACTGCCCAGGCAGTGCTGAGGATTAACTCTGCCACAGCATGGAGAAAGGCCTTTGGGACCTGCTCCTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCCGTATGCCCAAGGGAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTTAACCCTCTCGTATACACCCTGAGGAACAAGGAGATAAAGCGAGCACTCAGGAGGTTACTAGGGAAGGAAA
s panTro5.chr6             29701522 573 + 175400573 TGGCCTTTGACCGATACGTGGCTGTCTGCCAGCCCCTCCACTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTTATGAGTCTGGTCCAATCAATAGTCCAGACACCACCCACCCTCCACTTTCCCTTCTGTCCCCACCAGCAGATAGATGACTTTTTATGTGAGGTCTCATCTCTGATTCAACTCTCCTGTGGAGATACCTCCTACAATGAAATCCAGTTGGCTGTGTCCAGTGTCATCTTCGTGGTTGCGCCCCTCAGCCTCATCCTTGCCTCTTATGGAGCCATTGCCCAGGCAGTGCTGAGGATTAACTCTGCCACAGCATGGAGAAAGGCCTTTGGGACTTGCTCCTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCCATATGCCCAAGGGAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTTAACCCTCTCGTATACACCCTGAGGAACAAGGAGATAAAGCGAGCACTCAGGAGGTTACTAGGGAAGGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29931344 573 + 173848474 TGGCCTTTGACCGATACGTGGCTGTCTGCCAGCCCCTCCACTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTTATGAGTCTGGTCCAATCAATAGTCCAGACACCACCCACCCTCCACTTTCCCTTCTGTCCCCACCAGCAGATAGATGACTTTTTATGTGAGGTCTCATCTCTGATTCAACTCTCCTGTGGAGATACCTCCTACAATGAAATCCAGTTGGCTGTGTCCAGTGTCATCTTCGTGGTTGTGCCCCTCAGCCCCATCCTTGCCTCTTATGGAGCCATTGCCCAGGCAGTGCTGAGGATTAACTCTGCCACAGCATGGAGAAAGGCCTTTGGGACTTGCTCCTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCCATATGCCCAAGGGAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTTAACCCTCTCGTATACACCCTGAGGAACAAGGAGATAAAGCGAGCACTCAGGAGGTTACTAGGGAAGGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5741956 570 +   6154872 TGGCCTTTGACCGATACGTGGCTGTCTGCCAGCCCCTCCACTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTTATGAGTCTGGTCCAATCAATAGTCCAGACACCACCCACCCTCCACTTGCCCTTCTGTCCCCACCAGCAGATAGATGACTTTTTATGTGAGGTCTCATCTCTGATTCAACTCTCCTGTGGAGATACCCCCTACAATGAAATCCAGTTGGCTGTGTCCAGTGTCA---TCGTGGTTGTGCCCCTCAGCCTCATCCTTGCCTCTTATGGAGCCATTGCCCAGGCAGTGCTGAGGATTAACTCTGCCACAGCATGGAGAAAGGCCTTTGGGACTTGCTCCTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCCGTATGCCAAAGGGAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTTAACCCTCTCGTATACACCCTGAGGAACAAGGAGATAAAGCGAGCACTCAGGAGGTTACTACGGAAGGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30048271 573 + 172585720 TGGCTTTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCATTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCCCCATCGGCAAGTGGATGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTCTCCTGTGGGGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTATGGAGCCATTACCCGGGCAGTGCTGAGGATTAACTCTGCAAAAGGGCGGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCGCTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTTTACCTCCAGCCCAAAACTCCCTATGCCCAAGAGAGGGGCA-AGTTCTTTGCTCTCTTCTATGCAGTGGGCACTCCTTCACTGAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTGCTGGGGAAGGAAA
i rheMac8.chr4             C 0 T 68299
s macNem1.NW_012011356v1    2756616 573 -   2996164 TGGCTTTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCATTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCCCCATCGGCAAGTGGATGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTCTCCTGTGGGGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTATGGAGCCATTACCCGGGCAGTGCTGAGGATTAACTCTGCAAAAGGGCGGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCGCTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTTTACCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCA-AGTTCTTTGCTCTCTTCTATGCAGTGGGCACTCCTTCACTGAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTGCTGGGGAAGGAAA
i macNem1.NW_012011356v1   C 0 T 69386
s cerAty1.NW_012002711v1     510019 573 +    766320 TGGCTTTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCATTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCCCCATCGGCAAGTGGATGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTCTCCTGCGGGGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTATGGAGCCATTACCCGGGCAGTGCTGAGGATTAACTCTGCAAAAGGGCAGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCGCTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTTTACCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTGAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTGCTGGGGAAGGAAA
i cerAty1.NW_012002711v1   C 0 T 70960
s chlSab2.chr17            28966094 573 -  71996105 TGGCTTTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCACTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTTCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCCCCATCGGCAAGTGGATGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTCTCCTGTGGGGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGCGTCTTCATCTTGGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTATGGAGCCATTACCCGGGCAGTGCTGAGGATTAACTCTGCAAAAGGGCGGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCACTGTGGTCACACTCTTCTACAGCTCAGTCATTGCTGTTTACCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTGAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTGCTGGGGAAGGAAA
i chlSab2.chr17            C 0 T 68858
s manLeu1.NW_012099233v1     143054 573 +    290775 TGGCTTTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCATTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCCCCATTGGCAAGTGGATGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTCTCCTGCGGGGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTATGGAGCCATTACCTGGGCAGTGCTGAGGATTAACTCTGCAAAAGGGCAGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCGCTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTTTACCTCCAGCCCAAAAATCCCTACGCCCAAGAGAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTGAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTGCTGGGGAAGGAAA
i manLeu1.NW_012099233v1   C 0 T 70287
s colAng1.NW_012115566v1    2603358 573 -   3067355 TGGCATTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCACTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAATCAGTGGTCCAGATACTATCCACCCTGTGCCTGCCCTTCTGCCCCCATCGGCAGGTGGATGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTATCCTGTGGGGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTATGGAGCCATTACACGGGCAGTGTTGAGGATTAACTCTACAAAAGGGCGGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTTTACCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTAGGCACTCCTTTACTTAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCACTCAGGAGATTGCTGGGGAAGGAAA
i colAng1.NW_012115566v1   C 0 N 0
s proCoq1.NW_012152574v1     569027 573 +    730504 TGGCCTTTGACCGCTATGTGGCTGTCTGCCAGCCCCTCCACTACGCCACCATCAT-CCACCCCCACCTGTGCCGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTTCAGACACCACCCACCCTCCGCCTGCCCTTCTGCCCCCACCGGCAAGTGGATGATTTTGTCTGCGAGGTCCCTTCTCTAATTCGACTCTCCTGTGGAGACACCTCCTACAATGAGATCCAGATGGCTGTAGCCAGTGTCCTGATCTTGATCGTGCCCCTCAGCCTCATCCTTGTCTCTTATGGTGCCATTGCCCAGGCAGTGCTGAGGATTAACTCTGCAAAAGGGAGGAGGAAAGCTTTTGGAACCTGCTCCTCCCATCTCACGGTTGTCATCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCCCTATGCCCCAGAGAGGGGCA-AGTTCTTCGGTCTCTTCTACGCAGTGGGCACTCCTTCACTTAACCCCCTCATATACACCCTGAGGAACAAGGAGGTGAAGAGGGCATTCAGGAGGTTGCTGGGGAAAGATA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            16956 573 +  18854210 TGGCCTTTGACCGCTATGTGGCTGTCTGCCAACCCCTCCACTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTCTCCTGGGTTATTGGGCTGGTGGAGTCAGTGGTTCAGACACCACCCACCCTCCGCCTGCCCTTCTGCCCACACCGGCAAGTGGATGATTTTGTCTGCGAGGTCCCAGCTCTAATTCGACTCTCCTGTGCAGACACCTTCTACAATGAGATCCAAATAGCTGTTGCCAGTGTCCTAATCTTGATTGTGCCCCTCAGCCTCATCCTTGTCTCTTATGGTGCCATTGGCCGGGCAGTACTAAGGATTAACTCTGCAAAAGGAAGGAGGAAAGCTTTTGGAACCTGCTCCTCCCATCTCATGGTTGTCATCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCCCTATGCCCAAGAAAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGAACGCCTTCACTTAACCCTCTCATATACACCCTGAGGAACAAAGAGGTAAAGAGTGCCTTCAGGAGGTTGCTGGGGAAAGACA
i otoGar3.GL873550         I 21 C 0
s mm10.chr17               57816971 573 -  94987271 TGGCCTTTGACCGCTATGTGGCTGTGTGCCAGCCCCTGCACTATGCCACAGTCAT-CAACCCCCGCCTATGTCAGCAGTTGGCAGGTATAGCTTGGGCTATAGGTTTGGTCCAATCCATAGTTCAGACACCTCCCACCCTCAAACTGCCATTTTGTTCCCACAGGCAGATAGACAACTTTGTGTGTGAAGTCCCATCTCTAATTCAACTCTCTTGTGGAGACATCACATATAATGAGATCCAGATGGCTGTTGCTAGTATCTTCATTGTGGTTGTGCCTCTGAGTCTCATCCTTGTCTCTTATGGTGCCATTGCCAGGGCAGTGCTGAAGATAAGCTCTGCAAAGGGGCGCAGGAAAGCTTTTGGGACCTGTTCCTCCCACCTCATTGTGGTCACTCTCTTCTACAGCTCAGTCATTGCAGTTTATCTGCAGCCCAAAAACCCTTATGCCCGAGAGAGGGGCA-AGTTCTTTGGTCTCTTTTATGCAGTGGGTACCCCTATACTCAACCCTCTTGTATATACCCTGAGGAACAAGGAGGTAAAAAGAGCATTCTGGAAGCTGCTAAGGAAAGATG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26203736 571 +  26524999 TGGCCTTTGACCTCTACATGGCCATATGCCAGCCTCTGCACTATACCATCATCATGCCCCCGTTGCCTGTGCCGGCAGCTGGCGTCCATGGCCTGGGCCATCAGTCTGCTGGAGTCGGTGGTCCAGACACCACCCACTCTCCACCTGCCCTTGTGTCCCCACCAGCAGGGGGATGAGTTCGTGTGTGAGGTCCCAGCT-TAATCAGACTGTCTGGTGGGGACACCACCTACAACCAGATCCAGATGGCTGTCACCAGCATCCTCATCCTGCTCATGCCCATCGGCCTCATCCTGGTCTCTTACTGTGCCATTGCCCAGGCAGTGCTGAGGATTAACTCAGCCAACCGGTGGAGGAAAGCATGTGGGACCTGCTTCTCCCCTCTCGTGGTGGTCACCCTCTTCTACAGATCAGCCATCGCTGTCTACCTCCAGCCCCAGAATGCCTATGCCC-AGAAAGGGGCATAGTTCTTCTGTCTGTTCTGTGCCGTGGGCACTGCAGCAATGAACCCTC--ATTTACACCCTGAAAACCAAGGAGGTAAAGAGGGCTGTCAGAAGGTCGCTGGGGAAAGACA
i canFam3.chr35            C 0 C 0
e macFas5.chrUn_KE146120      19376   1 +     27237 I

a score=22904.000000
s hg38.chr6_GL000254v2_alt   728062 13 +   4827813 GAGACTCCAGGGA
s panTro5.chr6             29702095 13 + 175400573 GAGACTCCAGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29931917 13 + 173848474 GAGACTCCAGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5742526 13 +   6154872 GAGACTCCAGGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     569600 13 +    730504 GGGACTCCAGGGA
i proCoq1.NW_012152574v1   C 0 T 8247
s otoGar3.GL873550            17529 13 +  18854210 GGCACTCCAGGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57817544 13 -  94987271 AGGACTCTGAGGA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26204307 13 +  26524999 GGGATACATGGGA
i canFam3.chr35            C 0 C 0
e manLeu1.NW_012099233v1     143627 70287 +    290775 T
e chlSab2.chr17            28966667 68858 -  71996105 T
e cerAty1.NW_012002711v1     510592 70960 +    766320 T
e macNem1.NW_012011356v1    2757189 69386 -   2996164 T
e macFas5.chrUn_KE146120      19376  1 +     27237 I
e rheMac8.chr4             30048844 68299 + 172585720 T

a score=39394.000000
s hg38.chr6_GL000254v2_alt   728075 28 +   4827813 AAGCT---GGAGAG-CTGCTTAATATACTTTC
s panTro5.chr6             29702108 28 + 175400573 AAGCT---GGAGAG-CTGCTTAATATACTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29931930 28 + 173848474 AAGCT---GGAGAG-CTGCTTAATATACTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5742539 28 +   6154872 AAGCT---GGAGAG-CTGCTTAATATACTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     561366 31 +    730504 GAACTGAGGGAGAG-ATGCTTGATGTGCTTTC
i proCoq1.NW_012152574v1   T 8247 C 0
s otoGar3.GL873550            17542 31 +  18854210 AAACTTAGGGAGAG-ATGCTTAATGTGCTTTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57817557 31 -  94987271 GAGCTGAGGAAGAA-ATACTTAGCATACTTTC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26204320 26 +  26524999 GAGCT------GAGCCCGCTCCGTGTGCTTTC
i canFam3.chr35            C 0 N 0
e manLeu1.NW_012099233v1     143627 70287 +    290775 T
e chlSab2.chr17            28966667 68858 -  71996105 T
e cerAty1.NW_012002711v1     510592 70960 +    766320 T
e macNem1.NW_012011356v1    2757189 69386 -   2996164 T
e macFas5.chrUn_KE146120      19376  1 +     27237 I
e rheMac8.chr4             30048844 68299 + 172585720 T

a score=102483.000000
s hg38.chr6_GL000254v2_alt   728103 148 +   4827813 GAAAGTAAGAAGAGTTTCTTCAAG-ATTTATGAACATGTTAAGTTTTCCAGACTACTACCCTTCCCACATACACCTGAGCCACTGTGGTGGGT---------CACAGTGTG-GCTATGTT--ATCTATgagaggga----gaatgagaaa--gagagggacagagag
s panTro5.chr6             29702136 148 + 175400573 AAAAGTAAGAAGAGTTTCTTCAAG-ATTTATGAACATGTTAAGTTTTCCAGACTACTACCCTTCCCACATACACCTGAGCCACTGTGGTGGGT---------CACAGTGTG-GCTATGTT--ATCTATGAGAGGGA----GAATGAGAAA--GAGAGGGACAGAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29931958 148 + 173848474 AAAAGTAAGAAGAGTTTCTTCAGG-ATTTATGAACATGTTAAGTTTTCCAGACTACTACCCTTCCCACATACACCTGAGCCACTGTGGTGGGT---------CACAGTGTG-GCTATGTT--ATCTATGAGAGGGA----GAATGAGAAA--GAGAGGGACAGAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5742567 148 +   6154872 GAAAGTAAGAAGAGTTTCTTCAAG-ATTTATGAACATGTTAAGTTTTCCAGACTACTACCCTTCCCACATACACCTGAGCCACTGTGGTGGGC---------CACAGTGTG-GCTATGTT--ATCTATgagaggga----gaatgagaaa--gagagggacagagag
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     561397 138 +    730504 TAAATTAAAAAGAGTTTCTTCATG-ATTTGTAAAAATATTGATTTTCCACTCCCACTCCCTCTTCTGCACACACCTAAGCCACTGCCATAGGT---------CCCAGTGTG-ACTACGTGGTATCTATGACAGGGA----GAGGGAGAGA--GAG------------
i proCoq1.NW_012152574v1   C 0 I 41
s otoGar3.GL873550            17573 135 +  18854210 -AAATTGAGAAGAGATTCTACATGCGTTTATGAGGAAGTTTAAATT--ACCCACCCTCTGTCTTCCTCATCCATC-ATACCACAGCAATAGATGATAGCCAGCTCTGTATG-TGTGCGTG-----------AGAGA----GAGGTAGAGACTGAG------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57817588 139 -  94987271 CAAATTAAGATGAATTAGAACCTT-TGTTTTAAAAAAAATGAACTTCTGAGTCTACTTACTCTTCC----------AAGCCACAACAGTAGA----------CCTAGTGAGTGGCAGGCT--ATAGTGGAGGGGGATGGGTAGTGAGAAG--GAGAGAAGCAGA---
i mm10.chr17               C 0 C 0
e manLeu1.NW_012099233v1     143627 70287 +    290775 T
e chlSab2.chr17            28966667 68858 -  71996105 T
e cerAty1.NW_012002711v1     510592 70960 +    766320 T
e macNem1.NW_012011356v1    2757189 69386 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             30048844 68299 + 172585720 T

a score=16615.000000
s hg38.chr6_GL000254v2_alt   728251 24 +   4827813 ataaaagaaattgggtgagaggag
s panTro5.chr6             29702284 24 + 175400573 ATAAAAGAAATTGGGTGAAAGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29932106 24 + 173848474 ATAAAAGAAATTGGGTGAAAGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5742715 24 +   6154872 ataaaagaaattgggtgagaggag
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873550            17708 16 +  18854210 --------AATATGGTAAATGGAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57817727 22 -  94987271 --ATCAGCAGATGAGTGGGAAGAG
i mm10.chr17               C 0 I 18774
e proCoq1.NW_012152574v1     561535 41 +    730504 I
e manLeu1.NW_012099233v1     143627 70287 +    290775 T
e chlSab2.chr17            28966667 68858 -  71996105 T
e cerAty1.NW_012002711v1     510592 70960 +    766320 T
e macNem1.NW_012011356v1    2757189 69386 -   2996164 T
e macFas5.chrUn_KE146120      19376  1 +     27237 I
e rheMac8.chr4             30048844 68299 + 172585720 T

a score=-1916.000000
s hg38.chr6_GL000254v2_alt   728275  25 +   4827813 -----------------------atagGTAGCTCCA------------------------TAAGGCA-CACAA---------------------------
s panTro5.chr6             29702308  26 + 175400573 -----------------------ATAGGTAGCTCCA------------------------TAAGGCACCATAA---------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29932130  26 + 173848474 -----------------------ATAGGTAGCTCCA------------------------TAAGGCACCATAA---------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5742739  25 +   6154872 -----------------------atagGTAGCTCCA------------------------TAAGGCA-CACAA---------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873550            17724  25 +  18854210 -----------------------GTAAATATCTTTG------------------------TCAGAAAAGATG----------------------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57836523 100 -  94987271 atgatacaattctattttaattaaaaGTTATTTTTGGAAAAAAATTAAATCTTAAATTGCCAAGGCAACACACCTAATTGACACTTCAGTGTGACTATAA
i mm10.chr17               I 18774 C 0
e proCoq1.NW_012152574v1     561535  41 +    730504 I
e manLeu1.NW_012099233v1     143627 70287 +    290775 T
e chlSab2.chr17            28966667 68858 -  71996105 T
e cerAty1.NW_012002711v1     510592 70960 +    766320 T
e macNem1.NW_012011356v1    2757189 69386 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             30048844 68299 + 172585720 T

a score=78977.000000
s hg38.chr6_GL000254v2_alt   728300  98 +   4827813 ---------------------------------ATTCAAATATTATCATTCCTATCACTGTCCATTCTTAATA-TTTCTATCCTCCA-TTCTGTTCTTTTTACT-GTCATCACTTCTATAGATTTCCTAACTCC
s panTro5.chr6             29702334  98 + 175400573 ---------------------------------ATTCAAATATTATCATTCCTATCATTGTCCATTCTTAATA-TTTCTATCGTCCA-TTCTGTTCTTTTTACT-ATCATCACTTCTATAGATTTCCTAACTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29932156  98 + 173848474 ---------------------------------ATTCAAATATTATCATTCCTATCATTGTCCATTCTTAATA-TTTCTATCCTCCA-TTCTGTTCTTTTTACT-ATCATCACTTCTATAGATTTCCTAACTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5742764  98 +   6154872 ---------------------------------ATTCAAATATTATCATTCCTATCACTGTCCATTCTTAATA-TTTCTATCCTCCA-TTCTGTTCTTTTTACT-ATGATCACTTCTATAGATTTCCTAACTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     561576  98 +    730504 ---------------------------------ATTTAAACATTATCATGCCTATCACTGTCAATTCTTAATA-TTTCCTCTCTTCT-TCATCCTGTTTTTACT-ACCTTCACTTCTATAGATTCCCTGACTTC
i proCoq1.NW_012152574v1   I 41 C 0
s otoGar3.GL873550            17749  89 +  18854210 ---------------------------------AATTAAATTTAATATCTCCTCTGTTCTCTCTTTTTTAATA-GTTCCCCTCCCTTATCATACCATCACTATTCACCTCCAATTCTA---ATTCC--------
i otoGar3.GL873550         C 0 I 8883
s mm10.chr17               57836623 129 -  94987271 AGCCAAAGAGAGGGAGAGAGAAATATTCATGTCCTTTATAGACTTTAAGTTCAAACATTATTTACTCTTGATATTTTCTGTTTTCCA-TTGTA---TTTTCACT-GTCTTTGTTTCTATAAATTCTCAAACTCT
i mm10.chr17               C 0 C 0
e manLeu1.NW_012099233v1     143627 70287 +    290775 T
e chlSab2.chr17            28966667 68858 -  71996105 T
e cerAty1.NW_012002711v1     510592 70960 +    766320 T
e macNem1.NW_012011356v1    2757189 69386 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             30048844 68299 + 172585720 T

a score=183159.000000
s hg38.chr6_GL000254v2_alt   728398 188 +   4827813 ACCATGCCTATTTCTGGTTATATAATTGCTCTCCAATTGTCATGTCAGtgtaggggaactactccatcatagcattctggacaccttgcatgtatct--acgtaggtcatgtaagcaaaggcttgaagaacagctaatctgagatttagaagaatgctttttgatcctcctggaatatgagaggatggga
s panTro5.chr6             29702432 188 + 175400573 ACCATGCCTATTTCTGGATATATAATTGCTCTCCAATTGTCATGTCAGCAtaggggaactactccatcatagcattctggacaccttgcatgtatct--acgtaggtcatgtaagcaaaggcttgaagaacagctaatctgagatttagaaggatgctttttgatcctcctggaatatgagaggatggga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29932254 188 + 173848474 ACCATGCCTATTTCTGGTTATATAATTGCTCTCCAATTGTCATGTCAGtgtaggggaactactccatcatagcattctggacaccttgcatgtatct--acgtaggtcatgtaagcaaaggcttgaagaacagctaatctgagatttagaaggatgctttttgatcctcctggaatatgagaggatggga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5742862 188 +   6154872 ACCGTGCCTATTTCTGGTTATATAATTGCTCTCCAATTGTCATGTCAGtgtaggggaactactccatcatagcattctggacaccttgcatgtatct--acgtaggtcatgtaagcaaaggcttgaagaacagctaatctgagatttagaaggatgctttttgatcctcctggaatatgagaggatggga
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     561674 180 +    730504 ACCATGCCCATTTCTGGCTACACAATCTCTCTCCGATTGTCATGTCAGtgtagggaaaccactccatcatagcattctgga----------gtatttgaacacaggtcatgcaaacaaaggcttgagtcacagttaatctgagacttggaaggatgccttttgatcctgctggaatatgagaggatggga
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57836752 158 -  94987271 TTCATGGTGTTTTCTGGATATATCTTCTCTCTCCAGTTGTTATATCTGTGTAGTGAAGTcac-----------------------------atgtct--gcatgtgccatgcaagcaaaggcttaggatacagcaaatatgagagttgg-aggatgccgtttgatcctcttacaatgtgagagaaagtga
i mm10.chr17               C 0 T 45167
e otoGar3.GL873550            17838 8883 +  18854210 I
e manLeu1.NW_012099233v1     143627 70287 +    290775 T
e chlSab2.chr17            28966667 68858 -  71996105 T
e cerAty1.NW_012002711v1     510592 70960 +    766320 T
e macNem1.NW_012011356v1    2757189 69386 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             30048844 68299 + 172585720 T

a score=376566.000000
s hg38.chr6_GL000254v2_alt   728586 485 +   4827813 ggccctttagaacctgcctcaatgccatctctcactctccttcttatat-ccctgggagtatgtcatgtgacaagtctttactgtctcccaggttttggatggagcatggggttttctgccccacaccctttaggatatagctgaagaatataatgaggaatagctggattctagaactgactcctcaccagtggtatattccacaacagtgtcacagtcgtctggcccctttggtttccgtgtcatcctttttggtgtgtaggacaaggagccagggaattggcacgtttggcttttacttcttt---tttatatgtaaataataagccatctaagtgtaaaagtggctcatatcttctccagccaaatcagctaggccatggccttgccttgcttctcatgagtgtgcttgacaGTCATCACCGTCACTCTATCTTCATTTCTGGTTCTTACCGTGTTAGcttagttcattcaagctactatcacaa
s panTro5.chr6             29702620 485 + 175400573 ggccctttagaacctgcctcaatgccatctcttactctccttcttatat-ccctgggagtatgtcatgtgacaagtctttactgtctcccaggttttggatggagcatggcgttttctgtcccacaccctttaggatatagctgaagaatataatgaggaatagctggattctacaactgactcctcactagtggtatattccacaacagtgtcacagtcgtctggccccttttgtttccgtgtcatcctttttggtgtgtaggacaaggagccagggaattgtcaagtttggcttttacttcttt---tttatatgtaaataataagccatctaagtgtaaaagtggctcatatcttctccagccaaatcagctaggccatggccttgccttgcttctcatgagtgtgcttgacaGTCATCACCATCACTCTATCTTCATTTCTGGTTCTTACCGTGTTAGcttagttcattcaagctactatcacaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29932442 485 + 173848474 ggccctttagagcctgcctcaatgccatctcttactctccttcttatat-ccctgggagtatgtcatgtgacaagtctttactgtctcccaggttttggatggagcatggcgttttctgccccacaccctttaggatatagctgaagaatataatgaggaatagctggattctacaactgactcctcaccagtggtatattccacaacagtgtcacagtcgtctggccccttttgtttccgtgtcatcctttttggtgtgtaggacaaggagccagggaattgtcaagtttggcttttacttcttt---tttatatgtaaataataagccatctaagtgtaaaagtggctcatatcttctccagccaaatcatctaggccatggccttgccttgcttctcatgagtgtgcttgacaGTCATCACCATCACTCTATCTTCATTTCTGGTTCTTACCGTGTTAGcttagttcattcaagctactatcataa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5743050 484 +   6154872 ggccctttagaacctgcctcaatgccatctctcactctccttcttatat-tcctgggagtatgtcatgtgacaagtctttactgtctcccaggttttggatggagcatggggttttctgccccacaccctttaggatatagctgaagaatataatgaggaatagctggattctagaactgactcctcaccagtggtatattccacaacagtgtcacagtcgtctggccccttttgtttccgtgtcatcctttttggtgtgtaggacaaggagccagggaattggcacgtttggcttttacttc-tt---tttatatgtaaataataagccatctaagtgtaaaagtggctcatatcttctccagccaaatcagctaggccatggctttgccttgcttctcatgagtgtgcttgacaGTCATCACCGTCACTCTGTCTTCATTTCTGGTTCTTACCGTGTTAGcttagttcattcaagctactatcacaa
i gorGor5.CYUI01015250v1   C 0 C 0
s proCoq1.NW_012152574v1     561854 482 +    730504 ggcttattaggacctgcctcaatgccacctgtcactc----tcttatatgacctaggag-gtgttatgagac-agttcctattgcctcccaggtttc-gatggagcatgaggctgtctgctccacaccctttaggatagagctgcagaaaacagtgaggcttagctgcggtctagagttcactcctctccaaggggacatcccacaacagtgctctggtcacctggccccttttgtttcagtgtcaccccttttggtgtgtgggacaaggacccaaggagttggcccctttgtttttttcttctttgcatttgtatgtaaatgataaactatctgaatctaaaagtggttcatatctttaccaggtaaatcagtcaggcctcggccttgccttgtttgtcatgagtgcgtgtgacaGTCATCACTGTCACTCTATCTTCATTTCTGGTTCCTATCATGTtgtcttagtccatttgggctgctatcacaa
i proCoq1.NW_012152574v1   C 0 T 62472
e mm10.chr17               57836910 45167 -  94987271 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e manLeu1.NW_012099233v1     143627 70287 +    290775 T
e chlSab2.chr17            28966667 68858 -  71996105 T
e cerAty1.NW_012002711v1     510592 70960 +    766320 T
e macNem1.NW_012011356v1    2757189 69386 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             30048844 68299 + 172585720 T

a score=285303.000000
s hg38.chr6_GL000254v2_alt   729071 515 +   4827813 gctacacataaattgggtggtttataaataacaaacatttctttcttacagttctggaggctggaaactccaagattaaggcagatttcatgcctattgagggcctgctttctgattatagaaggtgacttcttgctgtgcccacacatggtgaaagggactaccaactctctggagtctcttttatgagggcactaattccaattatgaagcctcttccctcatgacctaatcactgcccaaaggccccatgttctaatgccatcatcttggtggtttaggatttcaacatatgaattttggaaggacataagcattcaacccCCTGCACATGTCTTCTTTCCTACTTCCTCAAGGTTCTTTCTGTCCAGTTGCTCCTTCTTCTATTGACCCTTTTTTGCCTTCTCTTTCTCCTTCACTGCCTCAAGTTACAGCCAGAGGAAAGGAGGAACTAAAACTTAGCAAATCTATAATCACATGCAAATACACAGAATGGATTGTTACAACCAAAATGC
s panTro5.chr6             29703105 515 + 175400573 gctacacataaattgggtggtttataaataacaaacgtttctttcttacagttctggaggctggaaactccaagattaaggcagatttcatgcctattgagggcctgctttctgattatagaaggtgacttcttgctgtgcccacacatggtgaaaggggctaccaactctctggagtctcttttatgagggcactaattccaatcatgaagcctcttccctcatgacctaatcactgcccaaaggccccatgttctaatgccatcatcttggtggtttaggatttcaacatatgaattttggaaggacataagcattcaacccCCTGCACATGTCTTCTTCCCTTCTTCCTCAAGGTTCTTTCTGTCCAGTTGCTCCTTTTTCTATTGACCCTTTTTTCCCTTCTCTTTCTCCTTCACTGCCTCAAGTTACAGCCAGAGGAAAGGAGGAACTAAAACTTAGCAAGTCTATAATCACATGCAAATACACACAATGGATTGTTACAACCAAAATGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29932927 515 + 173848474 gctacacataaattgggtggtttataaataacaaacatttctttcttacagttctggaggctggaaactccaagattaaggcagatttcatgcctattgagggcctgctttctgattatagaaggtgacttcttgctgtgcccacacatggtgaaaggggctaccaactctctggagtctcttttatgagggcactaattccaatcatgaagcctcttccctcatgacctaatcactgcccaaaggccccatgttctaatgccatcatcttggtggtttaggatttcaacatatgaattttggaaggacataagcattcaaaccCCTGCACATGTCTTCTTTCCTTCTTCCTCAAGGTTCTTTCTGTCCAGTTGCTCCTTCTTCTATTGACCCTTTTTTCCCTTCTCTTTCTCCTTCACTGCCTCAAGTTACAGCCAGAGGAAAGGAGGAACTAAAACTTAGCAAGTCTATAATCACATGCAAATACACACAATGGATTGTTACAACCAAAATGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5743534 515 +   6154872 gctacacataaattgggtggtttataaataacaaacatttctttcttacagttctggaggctggaaactccaagattaatgcagatttcatgcctattgagggcctgctttctgattatagaaggtgacttcttgctgtgcccacacatggtgaaaggggctaccaactctctggagtctcttttatgagggcactaattccaatcatgaagcctcttccctcgtgacctaatcactgcccaaaggctgcatgttctaatgccatcatcttggtggtttaggatttcaacatatgaattttggaaggacataagcattcaacccCCTGCACATGTCTTCTTTCCTTCTTCCTCAAGGTTCTTTCTGTCCAGTTGCTCCTTCTTCTATTGACCCTTTTTTGCCTTCTCTTTCTCCTTCACTGCCTCAAGTTACAGCCAGAGGAAAGGAGGAACTAAAACTTAGCAAGTCTATAATCACATGCAAATACACACAATGGGTTGTTACAAccaaaatgc
i gorGor5.CYUI01015250v1   C 0 I 29
e mm10.chr17               57836910 45167 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e manLeu1.NW_012099233v1     143627 70287 +    290775 T
e chlSab2.chr17            28966667 68858 -  71996105 T
e cerAty1.NW_012002711v1     510592 70960 +    766320 T
e macNem1.NW_012011356v1    2757189 69386 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             30048844 68299 + 172585720 T

a score=1173.000000
s hg38.chr6_GL000254v2_alt   729586 4 +   4827813 AGGC
s panTro5.chr6             29703620 4 + 175400573 AGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29933442 4 + 173848474 AGGC
i panPan2.chr6             C 0 C 0
e mm10.chr17               57836910 45167 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e manLeu1.NW_012099233v1     143627 70287 +    290775 T
e chlSab2.chr17            28966667 68858 -  71996105 T
e cerAty1.NW_012002711v1     510592 70960 +    766320 T
e macNem1.NW_012011356v1    2757189 69386 -   2996164 T
e macFas5.chrUn_KE146120      19376 1 +     27237 I
e rheMac8.chr4             30048844 68299 + 172585720 T
e gorGor5.CYUI01015250v1    5744049 29 +   6154872 I

a score=255096.000000
s hg38.chr6_GL000254v2_alt   729590 466 +   4827813 TCTATTGTTTTCAATTTAGCAGCCTTTCAAATGTATATGGTTCTGGCCACATTAAAGTTGCAAATAACACTTTTTTTGAGACTGAAATAAAGGTGAAATATTGGAAGGAAAAGTTTAATGTTTTATTTGTAGTA-TTTTTTTCCATTTTCCACTAAAGAGTCCAG--AAAAAAAAAGCAAACATAATATAACCTTTGAGTTATAACAGAATATTTCAACAAGAACTTTGTTGCTATCAAGTAACCATATAGTATAGGTTACACAGAACTCCTATCTTCTGGATTAAGACTCCGTCTTCAAAGTATTTGGGCACCCTGGTTACTGAACATGAGCCAGAAGAAAATGAACTGCTTTTCCTTAAGCATCTCTCTACCCCTGGGTCACCTCCAGTGGAGTGGTATGTCAAGAAATGTAATTTGTCCTTTCTGATGCCATAATCTACCATATTTTTTTAAATTAAGTCATGCCA
s panTro5.chr6             29703624 468 + 175400573 TCTATTGTTTTCAATTTAGCAGACTTTCAAATGTATATGGTTCTGGCCACATTAAAGTTGCAAATAACAACTTTTTTGAGACTGAAATAAAGGTGAAATATTGGAAGGAAAAGTTTAATGTTTTATTTGTAGTATTTTTTTTCCATTTTCCACTAAAGAGTCCAG-AAAAAAAAAAGCAAACATAATATAACCTTTGAGTTATAACAGAATATTTCAACAAGGACTTTGTTGCTATCAAGTAACCATATAGTATAGGTTACACAGAACTCCTATCTTCTGGATTAAGACTCCGTCTTCAAAGTATTTGGGCACCCTGGTTACTGAACATGAGCCAGAAGAAAATGAACTGCTTTTCCTTAAGCATCTCTCTACCACTGGGTCACCTCCAGTGGAGTGGTATGTCAAGAAATGTAATTTGTCCTTTCTGATGCCATAATCTACCATATTTTTTTTAATTAAGTCATGCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29933446 469 + 173848474 TCTATTGTTTTCAATTTAGCAGACTTTCAAATGTATATGGTTCCGGCCACATTAAAGTTGCAAATAACAACTTTTTTGAGACTGAAATAAAGGTGAAATATTGGAAGGAAAAGTTTAATGTTTTATTTGTAGTATTTTTTTTCCATTTTCCACTAAAGAGTCCAGAAAAAAAAAAAGCAAACATAATATAACCTTTGAGTTATAACAGAATATTTCAACAAGGACTTTGTTGCTATCAAGTAACCATATAGTATAGGTTACACAGAACTCCTATCTTCTGGATTAAGACTCCGTCTTCAAAGTATTTGGGCACCCTGGTTACTGAACATGAGCCAGAAGAAAATGAACTGCTTTTCCTTAAGCATCTCTCTACCCCTGGGTCACCTCCAGTGGAGTGGTATGTCAAGAAATGTAATTTGTCCTTTCTGATGCCATAATCTACCATATTTTTTTAAATTAAGTCATGCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5744078 467 +   6154872 TCTGTTGTTTTCAATTTAGCAGCCTTTCAAATGTATATGGTTCTGGCCACATTAAAGTTGCAAATAACAACTTTTTTGAGACTGAAATAAAGGTGAAATATTGGAAGGAAAAGTTTAATGTTTTATTTGTAGTA-TTTTTTTCCATTTTCCACTAAAGAGTCCAG-AAAAAAAAAAGCAAACATAATATAACCTTTGAGTTATAACAGAATATTTCAACAAGGACTTTGTTGCTATCAAGTAACCATATAGTATAGGTTACACAGAACTCCTATCTTCTGGATTAAGACTCCGTCTTCAAAGTATTTGGGCACCCTGGTTACTGAACATGAGCCAGAAGAAAATGAACTGCTTTTCCTTAAGCATCTCTCTACCCCTGGGTCACCTCCAGTGGAGTGGTATGTCAAGAAATGTAATTTGTCCTTTCTGATGCCATAATCTACCATATTTTTTTAAATTAAGTCATGCCA
i gorGor5.CYUI01015250v1   I 29 C 0
e mm10.chr17               57836910 45167 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e manLeu1.NW_012099233v1     143627 70287 +    290775 T
e chlSab2.chr17            28966667 68858 -  71996105 T
e cerAty1.NW_012002711v1     510592 70960 +    766320 T
e macNem1.NW_012011356v1    2757189 69386 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             30048844 68299 + 172585720 T

a score=204238.000000
s hg38.chr6_GL000254v2_alt   730056 286 +   4827813 GGAGGAGATTTCTCTGCTCCTCATCACATGTTTCCACCAGAAACATGGGCAGCTCCGCATC-TTGGGCTTCACCACCTTTAAGGTGAGGTGGATGGTCTTCTTCTTGGAAATTTCATAAGACGATAGCATTTTCTTGGGCTTTGGGGTCTTAAAGCCCAGCAGAAAAACCAAGTCCTGCATGGGAACCTTGGTCTTAGACCAGAGCTGTTCACCTACCTTCTTCACTCCA----TTTTAGCAGCC---AATGTCATTAATTCCCATTCCTCACAATTGACACTCATTTAGGCaa
s panTro5.chr6             29704092 286 + 175400573 GGCGGAGGTTTCTCTGCTCCTCATCACATGTTTCCACCAGAAACATGGGCAGCTCCACATC-TTGGGCTTCACCACCTTTAGGGTGAGGTGGATGGTCTTCTTCTTGGAAATTTCATAAGACGATAGTGTTTTCTTGGGCTTTGGGGTCTTAAAGCCCAGCAGAAAAACCAAGTCTTGCATGGGAACCTTGGTCTTAGACCAGAGCTGTTCACCTACCTTCTTCACTCCA----TTTTAGCAGCC---AATGTCATTAATTCCCATTCCTCACAATTGACACTCATTTGGGCaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29933915 286 + 173848474 GGCGGAGGTTTCTCTGCTCCTCATCACATGTTTCCACCAGAAACATGGGCAGCTCCACATC-TTGGGCTTCACCACCTTTAGGGTGAGGTGGATGGTCTTCTTCTTGGAAATTTCATAAGACGATAGTGTTTTCTTGGGCTTTGGGGTCTTAAAGCCCAGCAGAAAAACCAAGTCTTGCATGGGAACCTTGGTCTTAGACCAGAGCTGTTCACCTACCTTCTTCACTCCA----TTTTAGCAGCC---AATGTCATTAATTCCCATTCCTCACAATTGACACTCATTTGGGCaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5744545 286 +   6154872 GGAGGAGGTTTCTCTGCTCCTCATCAGATGTTTCCACCAGAAACATGGGCAGCTCTGCATC-TTGGGCTTCACCACCTTTAGGGTGAGGTGGATGGTCTTCTTCTTGGAAATTTCATAAGACGATAGCGTTTTCTTGGGCTTTGGGGTCTTAAAGCCCAGCAGAAAAACCAAGCCTTGCATGGGAACCTTGGTCTTAGACCAGAGCTGTTCACCTACCTTCTTCACTCCA----TTTTAGCAGCC---AATGTCATTAATTCCCATTCCTCACAATTGACACTCATTTGGGCaa
i gorGor5.CYUI01015250v1   C 0 C 0
s mm10.chr17               57791743 291 -  94987271 GGAGGAGGTGCCTTTGCCCCTCGTTTTTGGACTCCACCAGAAACAAGGGCAGCTCTTCATCACTGGGCTTCACCACCTTCAGGGTAAGGTGGATAGTGGTTTCCTTGTCAATCCCATAGGATGACAATTTTCGATGGGGCTTGAGGATTTTGGAGTCTAGCAGAAGGATCTGGTCCTGTACAGAGACCTTGGTTTGGGACCTAATATGTTCATTTATCTTCTTCACTTTGTCATTCTCAGTGGTCTCAAAGGTCATTAACCGCCATTGGTCTGAACGGACA---ACCTAGGCAA
i mm10.chr17               T 45167 T 6618
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e manLeu1.NW_012099233v1     143627 70287 +    290775 T
e chlSab2.chr17            28966667 68858 -  71996105 T
e cerAty1.NW_012002711v1     510592 70960 +    766320 T
e macNem1.NW_012011356v1    2757189 69386 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             30048844 68299 + 172585720 T

a score=821317.000000
s hg38.chr6_GL000254v2_alt   730342 1497 +   4827813 ttctatataaagttaaaatattcttcagaaacgaagatgaagtaaagatattctcagtgaaagtaggtatcaccaactcatctgatttaaaagaaatgcttttaagcatggattgcactgcttcaggcagagaggaaataaaaccagagggaaaatcagaatatcatgaatgaaaaaggaacaacagaaagagtaattatctgggtaaatgcaatcgtatattattctctttttgaattatttaaaatatgtatctctgttggaactaaaaagtacaacactgatggggattcatacaaatgtaatacatatgacaattactgaataaaCTAATAATAATAAATGGATCtattcattctaagtagaccatgaaagggtaaatatttatatcataatccctaaagcaacaattccaataaaacaaAAAACCATACTGTtgttataggcgtttgaaccagagtgactccatcttgagtagtggctgggtaaagtaaggctgaaacctgctgggctgcattcccaaaaggttaggcattctcagtcagaggatgagataggaggttggcataagatataggtcacaaagatcctgctgataaaacaggatgctgtaaggaagccggccaaaaccaagatggcaatgaaagtgacctctggtcctcctcactgttcattatactctaattataatgcattagcatgctgaatgacactcccatcaatgccgtgacagtttacaaatgccatggtaatgtccagaagtaaccctatgtaatctaaagaggggacgaactttcagttctgagaattgcccaccgtcttcccagaaaacttatgaataatccactccgtgtttagtatataatcaagaaataactgtaagtatactcagttgagcagcccatgccactgctctgtctatggagtagtcatactttattcctttactttcctaataaacttgctttcattttatggactcgccccaaattctttcttacatgagatccaagaatcctctcttggggtctggattggggcccctttccagtaacaCAgtgacatcaacaaaaataacagagtaatgacttccaaaaatgacctacttcctaagagtaaaatgaactatggaagaa-ttgtcagaattaatattgtttagaactctagaaattaaccaaaggcttgctgcaatctggggagtgtttgttcaagaataatagctgaatcttgataagaacagtgagctctgtgatgttttaactggttccactcctgttccttcctcctcagctcttaaaaaccaacggtccacaatcatggtgaaaaccagcagacatgaaatcactggaggggacacaatagggttacagatcctttaatcccttatttccagaggactgttattattttacctgtctggttgttccctagaactcacaatgctatccttatttgacttgactcagagctatcccagagagaacaatgtatttcctg
s panTro5.chr6             29704378 1498 + 175400573 ttctatataaagttgaaatattcttcagaaacgaagatgaagtaaagatattctcagtaaaagtaggtatcaccaactcatctgatttaaaagaaatgcttttaagcatggattgcactgcttcaggcagagaggaaataaaaccagagggaaaatcagaatatcatgaatgaaaaaggaccaacagaaagggtaattatctgggtaaatgcaatcgtatattattctctttttgaattctttaaaatatgtatctctgttggaactaaaaagtacaacactgatggggattcatacagatgtaatacatatgacaattactgaataaaCTAATAATAATaaatggaactattcattctaagtagaccatgaaaggttaaatatttatatcataatccctaaagcaacaattccaataaaacaaAAAACCATACTGTtgttataggcgtttgaaccagaatgactccatcttgagtagtggctgggtaaagtaaggctgaaacttgctgggctgcattcccaaaaggttaggcattctcagtcagaggatgagataggaggttggcataagatataggtcacaaatatcctgctgataaaacaggatgctgtaaggaagccggccaaaaccaagatggtaatgaaagtgacctctggtcctcctcactgttcattatactctaattataatgcattagcatactgaatgacactcccatcaatgccgtgacagtttacaaatgccatggtaatgtccagaagtaaccctatataatctaaagaggggaagaactttcagttctgagaattgcccaccatcttcccagaaaacttatgaataatccactccgtgtttagtatataatcaagaaataactgtaagtatactcagttgagcagcccatgccactgctctgtctatggagtagccatactttattcttttactttcctaataaacttgctttcattttatggactcaccccaaattctttcttatgtgagatccaagaatcctctcttggggtctggattggggcccctttccggtaacaCAgtgacatcaacaaaaataacagaataatgacttccaaaaatgacctactgcctaagagtaaaatgaactatggaggaatttgtcagaattaatattgtttagaactctagaaattaaccaaaggcttgctgcaatctggggagtgtttgttcaagaataatagctggatcttgataagaacagtgagctctgtgatgttttaactggttccactcctgttccttcctcctcagctcttaaaaaccaacagtccacaatcatggtgaaaaccagcagacatgaaatcactggaggggacacaatagggttacagatcctttaatcccttatttccagaagattgttattattttacctgtctggttgttccctagaactcacaatgctatccttatttgacttgactcagagctatcccagagagaacaatgtatttcctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29934201 1498 + 173848474 ttctatataaagttgaaatattcttcagaaacgaagatgaagtaaagatattctcagtaaaagtaggtatcaccaactcatctgatttaaaagaaatgcttttaagcatggattgcactgcttcaggcagagaggaaataaaaccagagggaaaatcagaatatcatgaatgaaaaaggaccaacagaaagggtaattatctgggtaaatgcaatcgtatattattctctttttgaattctttaaaatatgtatctctgttggaactaaaaagtacaacactgatggggattcatacagatgtaatacatatgacaattactgaataaaCTAATAATAATAAATGGATCtattcattctaagtagaccatgaaaggttaaatgtttatatcataatccctaaagcaacaattccaataaaacaaAAAACCATACTGTtgttataggcgtttgaaccagagtgactccatcttgagtagtggctgggtaaagtaaggctgaaacttgctgggctgcattcccaaaaggttaggcattctcagtcagaggatgagataggaggttggcataagatataggtcacaaagatcctgctgataaaacaggatactgtaaggaagccggccaaaaccaagatggcaatgaaagtgacctctggtcctcctcactgttcattatactctaattataatgcattagcatactgaatgacactcccatcaatgccgtgacagtttacaaatgccatggtaatgtccagaagtaaccctatataatctaaagaggggaagaactttcagttctgagaattgcccaccgtcttcccagaaaacttatgaataatccactccgtgtttagtatataatcaagaaataactgtaagtatactcagttgagcagcccatgccactgctgtgtctatggagtagccatactttattcttttactttcctaataaacttgctttcattttatggactcaccccaaattctttcttatgtgagatccaagaatcctctcttggggtctggattggggcccctttccggtaacaCAgtgacatcaacaaaaataacagaataatgacttccaaaaatgacctactgcctaagagtaaaatgaactatggaggaatttgtcagaattaatattgtttagaactctagaaattaaccaaaggcttgctgcaatctggggagtgtttgttcaagaataatagctggatcttgataagaacagtgagctctgtgatgttttaactggttccactcctgttccttcctcctcagctcttaaaaaccaacagtccacaatcatggtgaaaaccagcagacatgaaatcactggaggggacacaatagggttacagatcctttaatcccttatttccagaagattgttattattttacctgtctggttgttccctagaactcacaatgctatccttatttgacttgactcagagctatcccagagagaacaatgtatttcctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5744831 1494 +   6154872 ttctatataaagttgaaatattcttcagaaacgaagatgaagtaaagatattctcagtgaaagtaggtatcaccaactcatctgatttaaaagaaatgcttttaagcatggattgcactgcttcaggcagagaggaaataaaaccagagggaaaatcagaatatcatgaatgaaaaaggaacaacagaaagggtaattatctgggtaaatgcaatcatatattattctctttttgaattatttaaaatatgtatctctgttggaactaaaaagtacaacactgatggggattcatacagatgtaatacatatgacaattactgaataaaCTAATAATAATAAATGGATCtattcattcta---agaccatgaaaggttaaatatttatatcataatccctaaagcaacaattccaataaaataaAAGACCATACTGTCgttataggcgtttgaaccagagtgactccatcttgagtagtggctgggtaaagtaaggctgaaacctgctgggctgcattcccaaaaggttaggcattctcagtcagaggatgagataggaggttggcataagatataggtcacaaagatcctgctgataaaacaggatgctgtaaggaagccggccaaaaccaagatggcaatgaaagtgacctctggtcctcctcactgttcattatactctaattataatgcattagcatactgaatgacactcccatcaatgccatgacagtttacaaatgccatggtaatgtccagaagtaaccctatataatctaaagaggggaggaactttcagttctgagaattgcccaccgttttcccagaaaacttatgaataatccaccccgtgtttagtatataatcaagaaataactgtaagtatactcagttgagcagcccatgccgctgctctgtctatggagtggccatactttattcctttactttcctaataaacttgctttcattttatggactcaccccaaattctttcttacgtgagatccaagaatcctctcttggggtctggattgggggccctttccggtaacaCAgtgacatcaacaataataacagagtaatgacttccaaaaatgacctactgcctaagagtaaaatgaactatggaagaa-ttgtcagaattaacattgtttagaactctagaaattaaccaaaggcttgctgcaatctggggagtgtttgttcaagaataatagctgaatcttgataagaacagtgagctctgtgatgttttaactggttccactcctgttccttcctcctcagctcttaaaaaccaatggtccacaatcatggtgaaaaccagcagacatgaaatcactggaggggacacaatagggttacagatcttttaatcccttatttccagaggattgttattattttacctgtctggttgttccctagaactcacaatgctatccttatttgacttgactcagagctaccccagagagaacaatgtatttcctg
i gorGor5.CYUI01015250v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e manLeu1.NW_012099233v1     143627 70287 +    290775 T
e chlSab2.chr17            28966667 68858 -  71996105 T
e cerAty1.NW_012002711v1     510592 70960 +    766320 T
e macNem1.NW_012011356v1    2757189 69386 -   2996164 T
e macFas5.chrUn_KE146120      19376    1 +     27237 I
e rheMac8.chr4             30048844 68299 + 172585720 T

a score=898278.000000
s hg38.chr6_GL000254v2_alt          731839 1042 +   4827813 gggaaatgagtaaaaagaatcataggcagttgttgaacatcatggttgccgacggtcataaataacagttggaacaaacaatagcctaaccaagaacttaaaaacgaaatgtcagggaatgagatgcccataaaggggattgaaaagccttaatatactccagaaagttccgacggccacatgcatgcatagatgtgggcatgacaagtgctgcatatatgctttgaacagacctgagcaggctctaagctctaaccctgaataagtttgaggcactgcacagacaggaaatgaaggctaggacacagtgtaaactgcttggttgggctttgaagacctgtatctacctgcacacagagcctctctacatacactgggaga----------------cattacttccaggaacctaaggaaatctttgtccagtctttacctggccactaagctaaccaagcagagacttcagtggccacgttgaacaacaacaacaaca-----aaaacaaaacaaaacaaaaaaacaaaaaagaacagacttgacagatagtttttaaaaacctgatcaaaaaacatccactagcaatagtaaaatctgggaacagaaaaaatatgacttccagagttgccacattatactgtttaaaatgctaagttaaaaaagaaagaacgaaataatacaacatgcaaagaaacaataaagtaaggcccatacacagaaaaacaagcagttagtagaaactgtctctgggACCAGGCTCTGAAGGAGGTGTCTGCCTCAGTGCATCCAAAACAGCCAGGTAACCTTTGCTTTGGGACTGAAGTAATGGCTCTGATTCTGAGATGAGAGCTCACACTAGCCCTTAATTTAATCTTTACTTGAGGTGAAATTCaatggattattagaatgggccctaatccagtaggactagtgtccttataagaagacgagattaggatacaaacaccacaagggacaacgatgtgaggacacagggagaagatatccatctaggagccagggaaagagtcctcagaagaaacctatcctgcccactcc
s panTro5.chr6                    29705876 1047 + 175400573 gggaaatgagtaaaaagaatcataggcagttgttgaacatcatggttgcctatggtcataaataacagttggaacaaacaatagcctaaccaagaacttaaaaacgaaatgtcaaggaatgagatgtccataaaggggattgaaaagccttaatatactccagaaagttcagacggccacatgcatgcatagatgtgggcatgacaagtgctgcatatatgctttgaacagacctgagcaggctctaagctctaaccctgaataagtttgaggcactgcacagacaggaaatgaaggctaggacacagtgtaaactgcttggttgggctttgaagacctgtatctacctgcacacagagcctctctacatacactgggaga----------------cattacttccagaaacgtaaggaaatctttgtccagtctttacctggccactaagctaaccaagcagagacttcagtggccacattgaacaacaacaacaacaaaaacaaaacaaaacaaaacaaaaaaacaaaaaagaacagacttgacagatagtttttaaaaacctgatcaaaaaacaaccactagcaatagtaaaatctgggaacagaaaaaatatgacttccagagttgccacattatactgtttaaaatgctaagttaaaaaaaaaagaacgaaataatacaacatgcaaagaaacaataaagtaaggcccatacacagaaaaacaagcagttggtagaaactgtctctgggACCAGGCTCTGAAGGAGGTGTCTGCCTCAGTGCATCCAAAACAGCCAGGTAACCTTTGCTTTGGGACTGAAGTAATGGCTCTGATTCTGAGATGAGAGCTCACACTAGCCCTTAATTTAATCTTTACTTGAGGTGaaattaaatggattattagaatgggccctaatccagtaggactagtgtccttataagaagacgagattaggatacaaacaccacaagggacaaccatgtgaggacacagggagaagatatccatctaggagccagggaaagagtcctcagaagaaacctatcctgcccactcc
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29935699 1044 + 173848474 gggaaatgagtaaaaagaatcataggcagttgttgaacatcatggttgcctatggtcataaataacagttggaacaaacaatagcctaactaagaacttaaaaacgaaatgtcaaggaatgagatgtccataaaggggattgaaaagccttaatatactccagaaagttcagacggccacatgcatgcatagatgtgggcatgacaagtgctgcatatatgctttgaacagacctgagcaggctctaagctctaaccctgaataagtttgaggcactgcacagacaggaaatgaaggctaggacacagtgtaaactgcttggttgggctttgaagacctgtatctacctgcacacagagcctctctacatacactgggaga----------------cattacttccagaaacgtaaggaaatctttgtccagtctttacctggccactaagctaaccaagcagagacttcagtggccacattgaacaacaacaaaaacaaaaacaaaacaaaacaaaac-aaaaaacaaaaaagaacagacttgacagatagtttttaaaaacctgatcaaaaaacaaccactagcaatagtaaaatctgggaacagaaaaaatatgacttccagagttgccacattatactgtttaaaatgctaagttaaaaa--aaagaacgaaataatacaacatgcaaagaaacaataaagtaaggcccatacacagaaaaacaagcagttggtagaaactgtctctgggACCAGGCTCTGAAGGAGGTGTCTGCCTCAGTGCATCCAAAACAGCCAGGTAACCTTTGCTTTGGGACTGAAGTAATGGCTCTGATTCTGAGATGAGAGCTCACACTAGCCCTTAATTTAATCTttacttgaggtgaaattaaatggattattagaatgggccctaatccagtaggactagtgtccttataagaagacgagattaggatacaaacaccacaagggacaaccatgtgaggacacagggagaagatatccatctaggagccagggaaagggtcctcagaagaaacctatcctgcccactcc
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5746325 1034 +   6154872 gggaaatgagtaaaaagaatcataggcagttgttgaacatcatggttgcttatggtcataaataacagttggaacaaacaatagcctaaccaagaacttaaaaaggaaatgtcagggaatgagatgtccataaaggagattgaaaagccttaatatactccagaaagtccagagggccacatgcatgcatagatgtgggtatgacaagtgctgcataaatgctttgaatagacctgagcaggctctaagctctaaccatgaataaatttaaggcactgcacagacaggaaatgaaggctaggacacagtgtaaactgcttggttgggctttgaagacctgtctctacctgcacacagagcctctctacatatactgggaga----------------cattacttccaggaacctatggacatctttgcccagtctttacgtggccactaagctaaccaagcagagacttcagtggccacattgaacaacaacgacaaca--------acaaaaaaa----aaaaaacaaaaaaaaccagacttgacagatagtttttaaaaacctgatc-aaaaacaaccactagtaataataaaatctgggaacagaaaaaatatgacttccagagttggcacattatactgtttaaaatgctaagttaaaaaaaaaagaactaaataatacaacatgcaaagaaacaatgaagtaaggcccatacacaggaaaataagcagttagtagaaactgtctctgggACCAGGCTGTGAAGGAGGTGTCTGCCTCAGTGCAGCCAAAACAGCCAGGTAACCTTTGCTTTGGGAATGAAGTAATGGCTCTGGTTCTGAGATGAGAGCTCACACTAGCCCTTAATTTAATCTTTACTTGAGGTGAAATTCaatggattattagaatgggccctaatccagtaggactcgtgtccttataagaagacgagattaggatacaaacaccacgacggacaaccatgtgaggacacagggagaagatatccatctaggagccagggaaagagtcctcagaagaaacctatcctgcccactcc
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    26654 1042 +     39990 gGGAAATGAGTAaaaagaatcacaggcagttgttgaacatcatggttgcctatggtcataaataacagttgtaactaacaatagcctaaccaagaacttaaaaaggaaatg-cagggaatgagatgtccataaaggggactgaaaagccttaatatactccagaaagtccagagggccacatgcatgcatagatgtgggcatgacaagtgctgcatatatgctttgaacagacctgagcaggttctaagctctaaccctgaataagtttgaggcactgcacagacaggaaatgaaggctaggacacagcgtaaactgtttggttgggctttgaaaacctgtctcaacctgcacacagagcctctctacatacactgggagacattacttccaggaaccattacttccaggaacctaaggaaatctttgtccaatctttacctggccactaagctaaccaagcagagacttcagtggccacattgaacaacaacaataaca--------acaac--------caaaaaaaaaaaaaaaaagacatgacagataatttttaaaaacctgatcaaaaaacaaccactagcaataataaaatctgggaacagaaaaaatatgacttccagagttgccacattatactgtttaaaatgctaagttaaaa---aaaaagctaaataatacaacatgcaaagaaacaataaaataaggcccatacacaggaaaataagcagttagtagaaactgtctctgggACCAGGCTCTGAAGGAGGTGTCCGCTTCAGTGCAGCC-AAACAGCCAGGTAGTCTTTGCTTTGGGACTGAAGTAATGGCTCTGATTCTGAGATGAGAGCCCACTCTAGCCCTTAATTTATTCTTTACTTGAGGTGAAATTCaatggatcattagaatgggccctaatacagtaggactagtgtccttataagaagacgagattaggatacaaacaccacaagggacaaccatgtgaggacacagggagaagatacccatctaggagccagggaaagagtcctcagaagaaacctatcctgtccactcc
i nomLeu3.chr1a_JH996256_1_random N 0 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e manLeu1.NW_012099233v1            143627 70287 +    290775 T
e chlSab2.chr17                   28966667 68858 -  71996105 T
e cerAty1.NW_012002711v1            510592 70960 +    766320 T
e macNem1.NW_012011356v1           2757189 69386 -   2996164 T
e macFas5.chrUn_KE146120             19376    1 +     27237 I
e rheMac8.chr4                    30048844 68299 + 172585720 T

a score=49292.000000
s hg38.chr6_GL000254v2_alt          732881 32 +   4827813 ttgatctcagacttcctgcctcctagaaccga
s panTro5.chr6                    29706923 32 + 175400573 ttgatctcagacttcctgcctcctagaaccga
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29936743 32 + 173848474 ttgatctcagacttcctgcctcctagaaccga
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5747359 32 +   6154872 ttgatctcagacttccagcctcctagaaccga
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    27696 32 +     39990 ttgatctcagacttcccgcctcctagaaccga
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s chlSab2.chr17                   28897809 30 -  71996105 ttgatctcagactttcagcttcctaaaact--
i chlSab2.chr17                   T 68858 C 0
s manLeu1.NW_012099233v1             73340 30 +    290775 ttgatctcagactttcagcttcctaaaact--
i manLeu1.NW_012099233v1          T 70287 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e cerAty1.NW_012002711v1            510592 70960 +    766320 T
e macNem1.NW_012011356v1           2757189 69386 -   2996164 T
e macFas5.chrUn_KE146120             19376  1 +     27237 I
e rheMac8.chr4                    30048844 68299 + 172585720 T

a score=290416.000000
s hg38.chr6_GL000254v2_alt          732913 132 +   4827813 gagagaataaacttctgtagtttaagctactcggtttgtggtctcagtcacgggagtccaagcTGATGATCACAGTTGTGATGAGAACTTTACAAATTGAATCATGGGAAGTCTTGCAATAGTGAGATCTAC
s panTro5.chr6                    29706955 132 + 175400573 gagagaataaacttctgtagtttaagccactcggtttgtggtctcagtcacaggagtccaagcTGATGATCGCAGTTGTGATGAGAACTTTACAAATTGAATCATGGGAAGTCTTGCAATAGTGAGATCTAC
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29936775 132 + 173848474 gagagaataaacttctgtagtttaagccactcggtttgtggtctcagtcacaggagtccaagcTGATGATCGCAGTTGTGATGACAACTTTACAAATTGAATCATGGGAAGTCTTGCAATAATGAGATCTAC
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5747391 132 +   6154872 gagagaataaacttctgtagtttaagccactcagtttgtggtctcggtcttgggagtccaagcTGATGATCACAGTTGTGATGAGAACTTTACAAATTGAATCATGGGAAGTCTTGCAACAGTGAGATCTAC
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    27728 132 +     39990 gagagaataaacttctgtagtttaagccactcggtttgtggtctcggtcacgggagtccaagcTGATGATCACAGTTGTGATGAGAACTTTACAAATTGAATCATGGGAAGTCTTGCAACAGTGAGATCTAC
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s cerAty1.NW_012002711v1            439632 132 +    766320 gagagaatgaacttctgttgcttaagccactcagtctgtgatctctgtcatgggagccTGAACTGATGATCACATTTATGATGAAAACTTTACAGATGGAATTATGGAAAGTCTCAGAACAGTGAGATCTAC
i cerAty1.NW_012002711v1          T 70960 C 0
s chlSab2.chr17                   28897839 132 -  71996105 gagagaatgaacttctgttgcttaagccactcagtctgtgatctctgtcatggaagccTGAACTGATGATCACATTTATGATGAAAACTTTACAGATGGAATTATGGAAAGTCTCAGAACAGTGAGATCTAC
i chlSab2.chr17                   C 0 I 6
s manLeu1.NW_012099233v1             73370 132 +    290775 gagagaatgaacttctgttgcttaagccactcagtctgtgatctctgtcatgggagccTGAACTGATGATCACATTTATGATGAAAACTTTACAGATGGAATTATGGAAAGTCTCAGAACAGTGAGATCTAC
i manLeu1.NW_012099233v1          C 0 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e macNem1.NW_012011356v1           2757189 69386 -   2996164 T
e macFas5.chrUn_KE146120             19376   1 +     27237 I
e rheMac8.chr4                    30048844 68299 + 172585720 T

a score=32727.000000
s hg38.chr6_GL000254v2_alt          733045 36 +   4827813 GACCTGGTAGATCCTATAATCCTATAATCTGAGATG
s panTro5.chr6                    29707087 36 + 175400573 GAACTGGTAGATCCTATAATCCTATAATCTGAGATG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29936907 36 + 173848474 GAACTGGTAGATCCTATAATCCTATAATCTGAGATG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5747523 36 +   6154872 GACCTGGTAGATCCTATAATCCTATAATCTGAGATG
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    27860 36 +     39990 GACCTGGTAGATCCTATAATCCTATAATCTGAGATG
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e manLeu1.NW_012099233v1             73502  0 +    290775 C
e chlSab2.chr17                   28897971  6 -  71996105 I
e cerAty1.NW_012002711v1            439764  0 +    766320 C
e macNem1.NW_012011356v1           2757189 69386 -   2996164 T
e macFas5.chrUn_KE146120             19376  1 +     27237 I
e rheMac8.chr4                    30048844 68299 + 172585720 T

a score=13989.000000
s hg38.chr6_GL000254v2_alt          733081 6 +   4827813 CTGATT
s panTro5.chr6                    29707123 6 + 175400573 CTGATT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29936943 6 + 173848474 CTGATT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5747559 6 +   6154872 CTGATT
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    27896 6 +     39990 CTGATT
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s macNem1.NW_012011356v1           2687803 6 -   2996164 CTGGTT
i macNem1.NW_012011356v1          T 69386 C 0
s cerAty1.NW_012002711v1            439764 6 +    766320 CTGGTT
i cerAty1.NW_012002711v1          C 0 C 0
s manLeu1.NW_012099233v1             73502 6 +    290775 CTGGTT
i manLeu1.NW_012099233v1          C 0 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e chlSab2.chr17                   28897971 6 -  71996105 I
e macFas5.chrUn_KE146120             19376 1 +     27237 I
e rheMac8.chr4                    30048844 68299 + 172585720 T

a score=494374.000000
s hg38.chr6_GL000254v2_alt          733087 150 +   4827813 CTACAACTCTGAGCTGCTAACGCTTTGCTTCTGGGTCACAGAAGCTTCTGGAAATAAACTTGTCCCACAA--ACTGATAAATGCCTGTGATTTTTCTAGAAATATGCCACAGGCAACCCTGGCATCTGCAGTCACATGTCAGTATATCAGTG
s panTro5.chr6                    29707129 150 + 175400573 CTACAACTCTGAGCTGCTAACGCTTTGCTTCTGGGTCACAGAAGCTTCCGGAAATAAACTTGTCCCACAA--ACTGATAAATGCCTGTGATTTTTCTAGAAATATGCCACAGGCAACGCTGGCATCTGCAGTCACATGTCAGTATATCAGTG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29936949 150 + 173848474 CTACAACTCTGAGCTGCTAACGCTTTGCTTCTGGGTCACAGAAGCTTCCGGAAATAAACTTGTCCCACAA--ACTGATAAATGCCTGTGATTTTTCTAGAAATATGCCACAGGCAACGCTGGCATCTGCAGTCACATGTCAGTATATCAGTG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5747565 150 +   6154872 CTACGACTCTGAGCTGCTAACGCTTTGCTTCTGGGTCACAGAAGCTTCTGGAAATAAACTTGTCCCACAA--ACTGATAAATGCCTGTGATTTTTCTAGAAATATGCCACAGGCAACCCTGGCATCTGCAGTCACATGTCAGTATATCAGTG
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    27902 150 +     39990 CTACAACTCTGAGCTGCTAACGCTTTGCTTCTGGGTCACAGAAGCTTCTGGAAATAAACTCATCCCATAA--ACTGATAAATGCCTATGATTTTTCTAGAAATATGCCACAGGCAACCCTGGCGTCCGCAGTCACATGTCAGTATATCAGTG
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s macNem1.NW_012011356v1           2687809 150 -   2996164 CTACAACCCTGAGCTGCTGAAGCTTCATTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACAA--ACTGACAAATGCCTGCAATATGCCTGGAAATATCCCACAGGTGACCTTGTGGTCTGCAGTCACATACTGGTGCATCAGTA
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1            439770 150 +    766320 CTACAACCCTGAGCTGCTGAAGCTTCACTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACAA--ACTGACAAATGCCTGCGATATGCCTGGAAATATCCCACAGGTGACCCTGTGGCCTGCAGTCACATATTGGTGCATCAGTA
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                   28897977 152 -  71996105 CTACAACCCTGAGCTGCTGAAACTTCACTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACAATGCCTGACAAATGCCTGCGATATGCCTAGAAATATCCCACAGGTTACCTTGTGGCCTGCAGTCACATATTGGTGCATCAGTA
i chlSab2.chr17                   I 6 C 0
s manLeu1.NW_012099233v1             73508 150 +    290775 CTACAACCCTGAGCTGCTGAAGCTTCACTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACAA--ACTGACAAATGCCTGCGATATGCCTGGAAATATCCCACAGGTGACCCTGTGGCCTGCAGTCACATATTGGTGCATCAGTA
i manLeu1.NW_012099233v1          C 0 C 0
s colAng1.NW_012115566v1           2503619 150 -   3067355 CTACAACCCTGAGCTGCTGAAGCTTCACTTCTAAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACAA--ACTGACAAATGCCTGTGATATGCCTGGAAATATCCCACAGATGACCTTGTGGCCTGCAGTCACATATTGGTGCATCAGTA
i colAng1.NW_012115566v1          N 0 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e macFas5.chrUn_KE146120             19376   1 +     27237 I
e rheMac8.chr4                    30048844 68299 + 172585720 T

a score=408214.000000
s hg38.chr6_GL000254v2_alt          733237 91 +   4827813 GGGTTTCAGGAGAAGTTTAGGGATCAGCTCCAAGTGAACCTAGTGTTTCAATCTTCCCTCCTTGCTGGGATGATGGAGTCCCCTTCAGTCA
s panTro5.chr6                    29707279 91 + 175400573 GGGTTTCAGGAGAAGTTTAGGGATCAGCTCCAAGTGAACCTAGTGTTTCAATCTTCCCTCCTTGCTGGGATGATGGAGTCCCCTTCAGTCA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29937099 91 + 173848474 GGGTTTCAGGAGAAGTTTAGGGATCAGCTCCAAGTGAACCTAGTGTTTCAATCTTCCCTCCTTGCTGGGATGATGGAGTCCCCTTCAGTCA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5747715 91 +   6154872 GGGTTTCAGGAGACGTTTAGGGATCGGCTCCAAGTGAACCTAGTGTTTCAAATTTCCCTCCTTGCTGGGATGATGGAGTCCCCTTCAATCA
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    28052 91 +     39990 GGGTTTCAGGAGAAGTTTAGGAATCGGCTCCAAGTGAACCCAGTGTTTCGATCTTCCCTCCTTGCTGGGATGATGGAGTCCCCTTTAGTCA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                    29980545 90 + 172585720 -GGGTTTAGGAGAATGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTTTGAATCTTCCCTCCTTGCTGGGATGATGGAGTCCCCTTCAGTCA
i rheMac8.chr4                    T 68299 T 2993
s macNem1.NW_012011356v1           2687959 90 -   2996164 -GGGTTTAGGAGAATGCTAGAGACCAGCTCCAAGTGAGCCCAGTGTTTGAATCTTCCCTCCTTGCTGGGATGATGGAGTCCCCTTCAGTCA
i macNem1.NW_012011356v1          C 0 T 3018
s cerAty1.NW_012002711v1            439920 90 +    766320 -GGGTTTAGGAGAATGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTTTGAATCTTCCCTCCTTGCCGGGATGATGGAGTCCCCTTCAGTCA
i cerAty1.NW_012002711v1          C 0 T 2991
s chlSab2.chr17                   28898129 90 -  71996105 -GGGTTTAGGAGAATGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTTTGAATCTTCCCTCCATGCCGGGATGATGGAGTCCCCTTCAGTCA
i chlSab2.chr17                   C 0 T 2993
s manLeu1.NW_012099233v1             73658 90 +    290775 -GGGTTTAGGAGAATGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTTTGAATCTTCCCTCCTTGCCGGGATGATGGAGTCCCCTTCAGTCA
i manLeu1.NW_012099233v1          C 0 T 2992
s colAng1.NW_012115566v1           2503769 90 -   3067355 -GGGTTTAGGAGGATGCTAGGGATCAGCTCCAAGTGAGCCCAGTGTTTGAATCTTCCCTCCTTGCCGGGATGATGGAGTCCCCTTCAGTCA
i colAng1.NW_012115566v1          C 0 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e macFas5.chrUn_KE146120             19376  1 +     27237 I

a score=29415.000000
s hg38.chr6_GL000254v2_alt          733328 24 +   4827813 -AGGCTCTGTTGAAATGAAAGGGTC
s panTro5.chr6                    29707370 24 + 175400573 -AGGCTCTGTTGAAATGAAAAGGTC
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29937190 24 + 173848474 -AGGCTCTGTTGAAATGAAAGGGTC
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5747806 24 +   6154872 -AGGCTCTGTTGAAACGAAAGGGTC
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    28143 24 +     39990 -AGGCTCTGTTGAAATGAAAGGGTC
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s colAng1.NW_012115566v1           2503859 25 -   3067355 GCAGCTCTCTTGAAATGGAAGGGTC
i colAng1.NW_012115566v1          C 0 T 3147
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e manLeu1.NW_012099233v1             73748 2992 +    290775 T
e chlSab2.chr17                   28898219 2993 -  71996105 T
e cerAty1.NW_012002711v1            440010 2991 +    766320 T
e macNem1.NW_012011356v1           2688049 3018 -   2996164 T
e macFas5.chrUn_KE146120             19376  1 +     27237 I
e rheMac8.chr4                    29980635 2993 + 172585720 T

a score=2665778.000000
s hg38.chr6_GL000254v2_alt          733352 3046 +   4827813 TGTTCCCAGTTCCACTCTTCCCACCCAGGGTTCTGGACTGTTAATGGTTGTCCTTTTTTTGTTTTCTTCCCGTTGATTCTTTTACCATCTTCCTCCTCTTACTGATTTTGCGTGAAGGGGGGTTTTGATGGAGGTAAGGTAGCTGATAAGAAATGAGGTAGTGAGAAAACTAGTGAGGGGTCTTCTGGCTGTCCCCAGACAGTCCTCGTGTGGTCCCCAGCCCAGCCTGCAGGTTCTGGGCTGGCTACCTCTTGGCCTCTGTGCTGTGTGTCTAGAGCTGGCCTCTAAGGGAAGGGCCCTGTGAGACCTGGCAGAACAGGGTAACTGGTCCAACAAACATCCCTCCTTTCCTCTGGCTCCACAGCTCAGGATTAGATCTAGATAGCATGTCCAGTAGGTGCCAGACTACCTCATTATATCCTGTGAGATGGGCCCAGAGGGCCTTGAGGTGGGTAAGCTTGAAGCTGGGCACCCAGAGCCTGAGACTGACAGTTCCTCCCTCCCTGTATCCTGCAGGAGGGGCCCTGTCCCAACAAGAGCCCCAGGGCCTGGCCTGAGGGTGTGGATGTGGGGAGAGGAGGGTCTGTGGGCCCAGGAGGGGGCATTTGTAGGGGACATTGAGTACTGCAGCTCAGAAGACATGAATGACAGGGTGGGAGGTGTCTTCCATGTCTGTCCATGGCACAGCACCCCTGTGATTCCCAAGGGCTGCCAGGGGCCCATTCATCTgagctctttatagatcctacatatgagtccttcatcagatgtgaga-ttgaaaccacttcctccagcctggaacttgccttttcattctccccacagggtctttcaaagtgcacacatcttatattttgatgaaatccaattgatcaa-ttttttcttttatgcatcatactttttgtattcatccaagaaatattttcctaaccataagttacactgatattctcttttcttttcttacatacagcttacagctttaggtcttacattatggtttatgataaattctgaattaatttttatgtatgatgccacgtatggattgaagttctgttcatatgtgcatatgtatatccaataattctaaggaccgtttgttgctaagattgtcctttctccactgaatttactttacaccttcttcaaaatcaattgaagatatatgttagggtctattctggaccctcttctgttctgttgacctatttgtccatcctgttaccaatatcacaccatctggatttctgaacctttataataagccttgaagtcgggtattataaactgtctcacttgcttcttcttttttcaaag---------------------------------tttttttttttttttttaactattctaggtctactgcatcgccacacaCAGAATCACTTTCTCATGAACATACATACATGTGCACCAGAAatataaatatatgcacatcaagaccaagtgaaatttatcccagggatactaggcaggtttaacatgaaaaatgagccaatataattcaccacattaacagattaaaaggcaaaaacattatttcagcagattcagaaaaagcattagacaaaatccaataggctcat----------------------------------------------------aaaaaatttcagtcaactaggaatagaaacgaagtttctcaaaatgataaaaggcagctaccaaaaaaaaaatcctatggttgatatttagtgggtattacccttaataatgaaagactggatgcttt---caccccagatgaggaacaagccaagaatgttggctctcaccacttatttcagcgtcttaagaagataccatcagggcaaAGGACtccttccttaaatagacacagatttccatgtggagtcattattctcttgctggatgtatgtcttttaccacttctcagtctgcatatctcctggtgatgatttgtttcatcttttttgtgtctcc-aaaaacctctttattttgccatctctttgggaaatattttgactgtgtaaaaaattttaggctgacaaatttatttcttttaatattttaaagaattttctccactgtcatacaacttgcaactttccaacaagaaatctgcttcattcttatctttgattttctgtacatatatgtcttgttcttctctggctgtttgtaggaGGACTCAGTTTCCTGGGCATAGATATGCACGGGaaagatgcagtaactacatcaagtgtggtgttgtccaagggtggataaataggccaacagaacagagcagaaggcccagagacagacccacataagtctaaacatgattgataaccaaaaatcagaacaatagtgaaggactatatttgttataaatgtgctgggaccattggataACAATCAGCTAAGTGGGCCAAGCAGCCTTTTGGCTTAGGCTGAAGCAGGATAATAATGTTACCTATTAATAGAG-TGTGAAAA----CTGGCTTCATGTTTTCACAGTGATTAGAGCAATATTGAGATACAGTAAATCATCAGTGAACATATTTGCTCTAGTTGCTATTGCTACTATTCATCTTCCTGTCCCGTGCAGCGTCTTATGGTTACCATGATTCAAGTGCCTCCTGGTGAGGCCGAAACTCCACAAGACACTCTGGTCAGTCCTGGGGTACAGTTTCTTCCAGGTGGCAGAGGCTCAGTCCTGGTCACCCGCTGATCCCTTCTCAGGATGTGCCACACAGTTCTGCCCTACTGCGGGGTGAATGCTGGGATGCCTCTCTCTTTAAAAATTCCAAACAAGGGAACTGGTGTGAGAGGGTGGGTGCCTCCACTCCCTCAGCCCTTATTTCCAGGTGGGGATCACCCCAGAGGAGTAATTCTTGAGATGTggtccccaacacctttttaggggaagggaggccaacataatcttcaggtaatacttgaagtattgaagtgagtctgtgtttctcacactcatgcactcctgagtgaaagtggagttttccagagactgtatgaggtgagatgaagccgccaactggaaaactacaccaatgcagaagcagctgtgaatgtccagcttgctgctg-------ggcctctaagaggtctgcaaaatacaa
s panTro5.chr6                    29707394 3079 + 175400573 TGTTCCCAGTTCCACTCTTCCCACCCAGGGTTCTGGACTGTTAATGGTTGTCCTTTTTTTGTTTTCTTCCCGTTGATTCTTTTACCATCCTCCTCCTCTTACTGATTTTGCGTGAAGGGGGGTTTTGGTGGAGGTAAGGTAGCTGATAAGAAATGAGGTAGTGAGAAAACTAGTGAGGGGTCTTCTGGCTGTCCCCAGGCAGTCCTCGTGTGGTCCCCAGCCCAGCCTGCAGGTTCTGGGCTGGCCACCTCTTGGCCTCTGTGCTGTGTGTCTAGAGCTGGGCTCTAAGGGAAGGGCCCTGTGAGACCCGGCAGAACAGGGTAACTGGTCCAACAAACATCCCTCCTTTCCTCTGGCTCCACAGCTCAGGATTAGATCTAGACGGCATGTCCAGTAGGTGCCAGACCACCTCATTATATCCTGTGAGATGGGCCCAGAGGGCCTTGAGGTGAGTAAGCTTGAAGCTGGGCACCCAGAGCCTGAGACTGACTGTTCCTCCCTCCCTGTATCCTGCAGGAGGGGCCCTGTCCCAACAAGAGCCCCAGGGCCTGGCCTGAGGGTGTGGATGTGGGGAGAGGAGGGTCTGTGGG-CCAGGAGGGGGCATTTGTAGGGGACACTGAGTACTGCTGCTCAGAAGACATGAATGACAGGGTAGGAGGTGTCTTCCGTGTCTGTCCATGGCACAGCACCCCTGTGATTCCCAAGGGCTGCCAGGGGCCCATTCATCagagctctttatagatcctacatatgagtccttcatcagatgtgagatttgaaaccacttcctccagcctggaacttgccttttcattctccccacagggtctttcaaagtgcacacatcttatattttgatgaaatccaattgatcaa-ttttttctcttatgcatcatacttttcatattcatccaagaaatattttcctaaccataagttacactgatattctcttttcttttcttacatacagcttacagctttaggtcttacattatagtttatgataaattctgaattaatttttatgtatgatgccatgtatggattgaagttctgttcatatgtgcatatgtatatccaataattctaaggaccgtttgttgctaagattgtcctttctccactgaatttactttacacctttttcaaaatcaattgaagatatatgttagggtctattctggaccctcttctgttctgttgacctatttgtccatcctgttgccaatatcacaccatctggatttctgaacctttataataagccttgaagtcgggtattataaactgtctcacttgcttcttcttttttcaaagtttttttttttttttttttttttttttttttttttttttttttttttttttACTATTCTAGGTCTACTGCATCGCCACACACAGAATCACTTTCTCACAAACATACATACATGTGCACTAGAAatataaatatatgcacgccaagaccaagtgaaatttatcccagggatacaaggcaggtttaacatgaaaaatgagccaatataatttaccacattaacagattaaaaggcaaaaacattatttcagtagattgagaaaaagcattagacaaaatccaataggctcat----------------------------------------------------aaaaaatttcagtcaactaggaatagaaacaaagtttctcaaaatgataaaaggcatctagcaaaaaaaaaatcctgtggttgatatttagtgggtattacccttaataatgaaagactggatgcttt---caccccagatgaggaacaagccaagaatgttggctctcaccacttatttcggcatcttaagaagataccatcagggcaaAGGACtccttccttaaatagacacagatttccaggtggagtcattattctcttgctggatgtatgtcttttaccacttctcagtctgcatatctcctggtgatgatttctttcatcttttttgtgtctcc-aaaaacctctttattttgccatctctttgggaaatattttgactgtgtaaaaaattttaggctgacaaatttatttcttttaatattttaaagaattttctccactgtcatacaacttgcaactttccaacaagaaatctgcttcattcttatctttgattttctgtacgtatatgtcttgttcttctctggctgtttgtaggaGGACTCAGTTTCCTGGGCATAGATATGCATGGGaaagatgcagtaactacatcaagtgtggtgttgtccaagggtggataaataggccaacagaacagagcagaaggcccagagacagacccatataagtctaaacatgattgataaccaaaaatcagagcaatagtgaaggactatatttgttataaatgtgctgggaccattggataACAATCAGCTAAGTGGGCCAAGCGGCCTTTTGGCTTAGGCTGAAGCAGGATAATAATGTTACCTATTAATAGAG-TGTGAAAA----CTGGCTTCATGTTTTCACGGTGATTAGAGCAATATTGAGATATAGGAAATCATCAGTGAACATATTTGCTCTAGTTGCTATTGCTACTATTCATCTTCCTGTCCCGTGCAGCGTCTTATGGTTACCATGATTCAAGTGCCTCCTGGTGAGGCCGAAACTCCACAAGACACTCTGGTCAGTCCTGGGGTACAGTTTCTTCCAGGTGGCAGAGGCTCAGTCCTGGTCACCCGCTGATCCCTTCTCAAGATGTGCCACACAGTTCTGCCCTACTGCAGGGTGAATGCTGGGATGCCTCTCTCTTTAAAAATTCCAAACAAGGGAACTGGTGTGAGAAGGTGGGTGCCTCCACTCCCTCAGCCCTTATTTCCAGGTGGGGATCACCCCAGAGGAGTAATTCTTGAGATGTggtccccaacacctttttaggggaagggaggccaacataatcctcaggtaacacttgaagtattgaagtgagtctgtgtttctcacactcatgcactcctgagtgaaagtggagttttccagagactgtatgaggtgagatgaagctgccaactggaaaactccaccaatgcagaagcagctgtgaatgtccagcttgctgctg-------ggcctctaagaggtctgcaaaatacaa
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29937214 3012 + 173848474 TGTTCCCAGTTCCACTCTTCCCACCCAGGGTTCTGGACTGTTAATGGTTGTCCTTTTTTTGTTTTCTTCCCGTTGATTCTTTTACCATCCTCCTCCTCTTACTGATTTTGCGTGAAGGGGGGTTTTGGTGGAGGTAAGGTAGCTGATAAGAAATGAGGTAGTGAGAAAACTAGTGAGGGGTCTTCTGGCTGTCCCCAGGCAGTCCTCGTGTGGTCCCCAGCCCAGCCTGCAGGTTCTGGGCTGGCCACCTCTTGGCCTCTGTGCTGTGTGTCTAGAGCTGGGCTCTAAGGGAAGGGCCCTGTGAGACCCGGCAGAACAGGGTAACTGGTCCAACAAACATCCCTCCTTTCCTCTGGCTCCACAGCTCAGGATTAGATCTAGACGGCATGTCCAGTAGGTGCCAGACCACCTCATTATATCCTGTGAGATGGGCCCAGAGGGCCTTGAGGTGGGTAAGCTTGAAGCTGGGCACCCAGAGCCTGAGACTGACTGTTCCTCCCTCCCTGTATCCTGCAGGAGGGGCCCTGTCCCAACAAGAGCCCCAGGGCCTGGCCTGAGGGTGTGGATGTGGGGAGAGGAGGGTCTGTGGG-CCAGGAGGGGGCATTTGTAGGGGACACTGAGTACTGCTGCTCAGAAGACATGAATGACAGGGTAGGAGGTGTCTTCCGTGTCTGTCCATGGCACAGCACCCCTGTGATTCCCAAGGGCTGCCAGGGGCCCATTCATCagagctctttatagatcctacatatgagtccttcatcagatgtgagatttgaaaccacttcctccagcctggaacttgccttttcattctccccacagggtctttcaaagtgcacacatcttatattttgatgaaatccaattgatcaa-ttttttctcttatgcatcatacttttcatattcatccaagaaatattttcctaaccataagttacactgatattctcttttcttttcttacatacagcttacagctttaggtcttacattatagtttatgataaattctgaattaatttttatgtatgatgccatgtatggattgaagttctgttcatatatgcatatgtatatccaataattctaaggaccgtttgttgctaagattgtcctttctccactgaatttactttacacctttttcaaaatcaattgaagatatatgttagggtctattctggaccctcttctgttctgttgacctatttgtccatcctgttgccaatatcacaccatctggatttctgaacctttataataagccttgaagtcgggtattataaactgtctcacttgcttcttc-tttttcaaag--------------------------tttttgttgttgtttttttttttttactattctaGGTCTACTGCATCGCCACACACAGAATCACTTTCTCACAAACATACATACATGTGCACTAGAAATATAAATATATGCATGccaagaccaagtgaaatttatcccagggatacaaggcaggtttaacatgaaaaatgagccaatataatttaccacattaacagattaaaaggcaaaaacattatttcagtggattgagaaaaagcattagacaaaatccaataggctcat----------------------------------------------------aaaaaatttcagtcaactaggaatagaaacaaagtttctcaaaatgataaaaggcatctagcaaaaaaaaaatcctgtggttgatatttagtgggtattacccttaataatgaaagactggatgcttt---caccccagatgaggaacaagccaagaatgttggctctcaccacttatttcggcatcttaagaagataccatcagggcaaAGGAc----------------------------------------attctcttgctggatgtatgtcttttaccacttctcagtctgcatatctcctggtgatgatttctttcatcttttttgtgtctcc-aaaaacctctttattttgccatctctttgggaaatattttgactgtgtaaaaaattttaggctgacaaatttatttcttttaatattttaaagaattttctccactgtcatacaacttgcaactttccaacaagaaatctgcttcattcttatctttgattttctgtacgtatatgtcttgttcttctctggctgtttgtaggaGGACTCAGTTTCCTGGGCATAGATATGCATGGGaaagatgcagtaactacatcaagtgtggtgttgtccaagggtggataaataggccaacagaacagagcagaaggcccagagacagacccatataagtctaaacatgattgataaccaaaaatcagagcaatagtgaaggactatatttgttataaatgtgctgggaccattggataACAATCAGCTAAGTGGGCCAAGCGGCCTTTTGGCTTAGGCTGAAGCAGGATAATAATGTTACCTATTAATAGAG-TGTGAAAA----CTGGCTTCATGTTTTCACGGTGATTAGAGCAATATTGAGATATAGGAAATCATCAGTGAACATATTTGCTCTAGTTGCTATTGCTACTATTCATCTTCCTGTCCCGTGCAGCGTCTTATGGTTACCATGATTCAAGTGCCTCCTGGTGAGGCCGAAACTCCACAAGACACTCTGGTCAGTCCTGGGGTACAGTTTCTTCCAGGTGGCAGAGGCTCAGTCCTGGTCACCCGCTGATCCCTTCTCAAGATGTGCCACACAGTTCTGCCCTACTGCAGGGTGAATGCTGGGATGCCTCTCTCTTTAAAAATTCCAAACAAGGGAACTGGTGTGAGAGGGTGGGTGCCTCCACTCCCTCAGCCCTTATTTCCAGGTGGGGATCACCCCAGAGGAGTAATTCTTGAGATGTggtccccaacacctttttaggggaagggaggccaacataatcctcaggtaatacttgaagtattgaagtgagtctgtgtttctcacactcatgcactcctgagtgaaagtggagttttccagagactgtatgaggtgagatgaagctgccaactggaaaactccaccaatgcagaagcagctgtgaatgtccagcttgctgctg-------ggcctctaagaggtctgcaaaatacaa
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5747830 3062 +   6154872 TGTTCCCAGTTCCACTCTTCCCACCCACAGTTCTGGACTGTTAATGGTTGTCC-TTTTTTGTTTTCTTCCCATTGATTCTTTTACCATCTTCCTCCTCTTACTGA-TTTGCATGAAGGGGGGTTTTGATGGAGGTAAGGTAGCTGATAAGAAATGAGGTAGTGGGAAAACTAGTGAGGGGTCTTCTGGCTGTCCCCAGACAGTCCTCTTGTGGTCCCCAACCCAGCCTGCAGGTTCTGGGCTGGCCACCTCATGGCCTCTGTGCTGTGTGTCTAGAGCTGGGCTCTAAGGGAAGGGCCCTGTGAGACCCGGCAGAACAGGGTGACTGGTCCAACAAACATCCCTCCTTTCCTCTGGCTTCACAGCTCAGGATTAGATCTAGATGGCGTGTCCAGTAGGTGCCAGACCACCTCATTATATCCTGTGAGATGGGCCCAGAGAGCCTTGAGGTGGGTAAGCTTGAAGCTGGGCACCCAGAGCCTGAGACTGACTGTCCCTCCCTCCCTGTGTCCTGCAGGAGGGGCCCTGTCGCAACAAGAGCCCCAGGGCCTGGCCTGAGGGTGTGGATGTGGGGAGAGAAGGGTCTGTGGG-CCCAGGAGGGGCATTTGTAGGGGACATTGAGCACTGCTGCTCAGAAGACATGAATGACAGGGTGGGAAGTGTCTTCCGTGTCTGTCCAGGGCACAGCACCCCTGTGATTCCCAAAGGCTGCCAGGGGCCCATTCATCagagctctttctagatcctacatatgagtccttcatcagatgtgagatttgcaaccacttcctccagcctgggacttgccttttcattctccccacagggtctttcaaagtgcacacatcttatattttgatgaaatccaattgatcaa-ttttttcttttatgcagcatacttttcgtattcatccaagaaa-attttcctaaccataagttacactgatattctcttttcttttcttacatacagcttacagctttaggtcttacattatagtttatgataaattctgaattaatttttatgtatgatgccatgtatggattgaagttctgttcatatgtgcatatgtatatccaataattctgaggaccatttgttgctaagattgtcctttctccactgaatttactttacaccttttccaaaatcaattgaagatatatgttagggtctattctggaccctcttctgttctgttgacctatttgtccatcctgttgccaatatcacaccatctggatttttgaacctttat-----gccttgaagttgggtattataaactgtctcacttgcttcttcttttttcaaag-------------------------ttttttttttttttttttttttttttACTATTCTAGGTCTACTGCATCGCCACACACAGAATCACTTTCTCACAAACATACATACGTGTGCACCAGAAatataaatatatgcacatcaagaccaagtgaaatttatcccagggatacaaggcaggtttaacatgaaaaatgagccaatataatttaccacattaacagattaaaatgcaaaaacattatttcagtagattgagaaaaagcattagacaaaatccaataggctcat----------------------------------------------------aaaaaatttcagtcaactaggaatagaaacaaagtatctcaaaatgataaaaggcatctaccaaaaaaaaaatcctgtggttgatatttagtgggtattacccttaataatgaaagactggatgctttcaccaccccagatgaggaacaagccaagaatgttggctctcaccacttatttcagcatcttaagaagataccatcagggcaaAGGACtccttccttaaatagacacagatttccatgtggagtcattattctcttgctggatgtatgtcttttaccacttctcagtctgcatatctcctggtgatgatttctttcatcttttttgtgtctccaaaaaacctctttattttgccatctctttgggaaatattttgactgtgtaaaaaattttaggctgacaaatttatttcttttaatattttaaagaattttctccaccgtcgtacaacttgcaactttccaacaagaaatctgcttcattcttatctttgatcttctgtacgtatatgtcttattcttctctggctgtttgtaggaGGATTCAGTTTCCTGGGCATAGATATGCATGGGaaagatgcagtaactacatcaagtatggtgttgtccaagggtggataaataggccaacagaacagagcagaaggcccagagacagacccacataagtctaaacatgattgataaccaaaaatcagagcaatagtgaaggactatatttgttataaatgtgctgggaccattggataACAACCAGCTAAGTGGGCCAAGCGGCCTTTTGGCTTAGGCTGAAGCAggataataatgttacctattaatagagttgttaaaattacctggcttcatgctttcacagtgattacagcaatattgagatataggaaatcatcagtgaaCATATTTGCTCTAGTTGCTATTGCTACTATTCATCTTCCTGTCCCGTGCAGTGTCTTATGGTTACCATGATTCAAGTGCCTCCTGGTGAGGCCGAAACTCCACAAGACACTCTGGTCAGTCCTGGGGTACAGTTTCTTCCAGGTGGCAGAGGCTCAGTCCTGGTCACCCGCTGATCCCTTCTCAGGATGTGCCACACAGTTCTGCCCTACTGCAGGGTGAATGCTGGGTTGCCTCTCTCTTTAAAAATTCCAAACAAGGGAACTGGTGTGAGAGGGTGGGTGCCTCCACTCCCTCAGCCCGTATTTCCAGGTGGGGATCACCCCAGAGGAGTAATTCTTGAGATGTggtctccaacacctttttaggggaagggaggccaacgtaatcttcaggtaatacttgaagtattgaagtgagtctgtgtttctcacactcatgcactcctgagtgaaagcagagttttccagagaccatatgaggtgagatgaagccaccaactgtaaaactccaccaatgcagaagcagctgtgaatgtccagcttgctgctggacgacaggcctctaagaggtctgcaaaatacaa
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    28167 3120 +     39990 TGTTCCCAGTTCCACTCTTCCCACCCAGGGTTCTGGACTGTTAATGGTTATCCTTCTTTTGTTTTCTTCCCATTGATTCTTTTACCATCTTCCTCCTCTCACTGATTTTGCATGAAGGGAGGTTTTGATGGAGGTAAGGTAGCTGGTAAGAAATGAGGTAGTGAGAAAACTAGTGAGGGGTCTTCTGGCTGTCCCCAGACAGTCCTCGTGTGGTCCCCAGCCCAGCCTGCAGGTTCTGGGCTGGCCACCTCATGGCCTCTGTGCTGTGTGTCTAGAGCTGGGCTCTAAGGCAAGGGCCCTGTGAGACCCGGCAGAACAGGGTGACTGGTCCAACAAACATCCCTCCATTCCTCTGGCTCCGCAGCTCAGGATTAGATCTAGACGGCGTGTCCAGGAGGTGCCAGACCACCTCATTATATCCTGTGAGATGGGCCCAGAGGGTTTTGAGGTGGGTAAGCTTGAAGTTGGGCACCCAGAGCCTGAGACTGACTGTCCCCCCCTCCATGTGTCCTACAGGAGGGGCCCTGTCCCAACAAGAGGCCCACGGCCTGGCCTGAGGGTGTGGATGTAAGGAGAGGAGGGTCTGTGGGCCCAGGAGGGGGCATTGGTAGGGGACTTTGAGCACTGCTGCTCAGAAGACATGAATGACAGGTTGGGAGGTGTCTTCCGTGTCTGTCCAGGGCACAGCACCCCTGTGATTCCTGAGGGCTGCCAGGGACCCATTCATCagagctctttatagatcctacatatgagtccttcatcagatgtgagatttgcaactacttcctccagcctgggacttgccttttcattctccccacagggtctttcaaagtgcacacatcttatattttgatgaaatccaattgatcaatttttttcttttatgcgtcatacctttcgtattcatccaagaaatattttcctaaccaaaagtcacactgatattctcttttcttttcttacatacagcttacagctttaggtgttacattttggtttatgataaaatctgaattaatttttatgtatgatgccacgtatggattgaagttctgttcatatgtgcatatgcatatccaataattctaagtaccatttgttgctaagattgtcgtttctccactgaatttactttacacgtttttcaaaatcaattgaacatatatgttagggtctattctggactgtcttctgttctattgacctatttgtccatcctgttaccaatatcacaccttctggatttctgaacctttataataagccttgaagtcaggtattataaa----ctcacttgcttcttcttttttcaaag-------------------ttggtttTtttgtttgtttgtttgtttgtttTACTATTGTAGGTCCACTGCATTGCCACACACAGAATCACTTTCTCACGAGCATACATACATGTGCACCAGACATACAAATATATGCacatcatgaccaagtgaaatttatcccagggatacaaggcaggtttaatatgaaaaaggagcccatataatttaccatattaacagattaaaaggcaaaaacattatttcagcagattcagaaaaagcattagacaaaatccaataGGCTCACCCTAAAACTTAAAGTATaataataataaaataaaaaaaaagaaaaaCCACAAaaaaaatttcagtcaactaagaatagaaacaaagtttctcaaaatgataaaaggcatctacc--aaaaaaaatcctatggttgatatttagtgggtattacccttaataatgaaagactggatgcttt---caccccagatgaggaacaagccaagaatgttggctctcaccacttatttcagcatCTTAAGAAGAGACCATCAGGGCAAAGGAttccttccttaagtagacacagatttccgtgtggagtcattattctcctgctggatatatgtcttttaccacttctcagtctgcatatctcctggtgatgatttctttcatcttttttgtatctcc-aaaaacctctttattttgccatctctttgggaaatattttgactgtgtaaaaaattttaggctgacaaatttatttcttttaatattttaaagaatcttcttcactgtcgtacaacttgcaactttccaacgagaaatctgcttcattcttatctttgattttctatacatatatgtcttcttcttctctggctgtttgtaggaGGACTCAGTTTCCTGGGCATAGATATGCATGGAaaagatgcagtaactacatcaagtatggtgctgtccaacggtggataaataggccaacagaacagagcagaaggcccagagacagacccacataagtctaaccatgattgataaccaaaaatcagagcaatagtgaaggactgtatttgttataaatgtgatgggaccattggataACAACCAGCTAAGTGGGCCAAGCAGACTTTTGGCTTAGGCTGAAGCAGGATAATAATGTTACCTATTAATAGAGTTGTTAAAATCACCTGGCTTCATGTTTTCACAGTGATTAGAGCAATATTGAGATAAAGGAAATCATCAGTGAACATATTTGCTCTAATTGCTATTGTTACTGTTCATCTTCCTGTCCCGTGCAGCATCTTATGGTTGCCATGACTCAAGTGCCTCCTGGTGAGGCCAAAACTCCACAAGACACTCTGGTGAGTCTTGGGGTACAGTTTCTCCCTGGTGGCAGAGGCTCAGTCCTGATCACCCGCTGATCCCTTCTCAGGATGTGCCACACAGTTCTGCCCCACTGCAGGGTGAATGCTGGGATGCCTCTCTCTTTAAAAATTCTGAACAAGGGAACTGGTGTAAGAGGTTGGGTGCCTCCACCCCGTCAGCCCTTATTTCTAGGTGAGGATCACCCCAGAGGGGTAATTCTTGAGATGTggtccccaagacctttttgggggaagagaggccaacataatcttcaggtaatacgtgaagtattgaagtgagtctgtgtttctcacactcatgcactcctgagtgaaagtggagttttccagagaccgtatgaggcgagatgaagccaccaactggaaaactccaccaatgcagaagcagctgtgaatgtccagcttactgctggacaacggggctctaagaggtctgcaaaatacaa
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e colAng1.NW_012115566v1           2503884 3147 -   3067355 T
e manLeu1.NW_012099233v1             73748 2992 +    290775 T
e chlSab2.chr17                   28898219 2993 -  71996105 T
e cerAty1.NW_012002711v1            440010 2991 +    766320 T
e macNem1.NW_012011356v1           2688049 3018 -   2996164 T
e macFas5.chrUn_KE146120             19376    1 +     27237 I
e rheMac8.chr4                    29980635 2993 + 172585720 T

a score=808478.000000
s hg38.chr6_GL000254v2_alt          736398 655 +   4827813 aacca------tcttg--ctcttctcaataacataactttttaaagaaaacatagttattttttctaaaatttattcatgtttacatggaataggcatacaatttatgttctaaaggagttaataagtaaacatttgtaaagttctgagttataattactaatactgtaaatattgaaagatacaaccctgatccacaaaagttctttgagctgctcaatactatttaagactgAGAATCTCAGGTCTATTTTAAGctctgggctctctctctttccccgcactttttccctccc-ggggagaaggaaagaaactgatgagtgagtttggaagaataacctggAGTGAGTGCTCCCTTCACCAGTGGGTGGTGAGTTCCCCAGAAGGACTGCTTTCCTCCAAAGAGAGATGGGCAGGAAGAGGGAGGAGGGATGGGATCCTCTGGAGTAGGTACCATTTAAGGGGCACTTTTGAAAGTCAGTTTTTTAGacatccaagcccctttctccagttcaattttaggagcaatagaagtaatgcattgttctccatctgacactgtcctcattccttcattcactttcatcagtagttctcaattccagagggaaggaa-ggggattacttactAAACTGTAATAGTCCATACCTAGCCTTGACATTTT
s panTro5.chr6                    29710473 654 + 175400573 aacca------tcttg--cttttctcaataacataactttttaaagaaaacatagttattttttctaaaatttattcatgtttacatggaataggcatacaatttatgttctaaaggagttaataagt-aacatttgtaaagttctgagttataattactaatactgtaaatattgaaagatacaaccctgatccacaaaagttctttgagctgctcaatactatttaagactgAGAATCTCAGGTCTATTTTAAGctctgggctctctctctttccccccactttttccctccc-ggggagaaggaaggaatctgatgagtgagtttggaagaataacctggAGTGAGTGCTCCCTTCACCAGTGGGTGGTGAGTTCCCCAGAAGGACTGCTTTCCTCCAAAGAGAGATAGGCAGGAAGAGGGAGGAGGGATGGGATCCTCCGGAGTAGGTACCATTTAAGGGGCACTTTTGAAAGTCAGTTTTTTAGacatccaagccactttctccagttcaattttaggagcaatagaagtaatgcattgttctccatctgacactgtcctcattccttcattcactttcatcagtagttctgaattccagagggaaggaa-ggggattacttactAAACTGTAATAGTCCATACCTAGCCTTGACATTTT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29940226 653 + 173848474 aacca------tcttg--ctcttctcaataacataactttttaaagaaaacatagttattttttctaaaatttattcatgtttacatggaataggcatacaatttatgttctaaaggagttaataagt-aacatttgtaaagttctgagttataattactaatactgtaaatattgaaagatacaaccctgatccacaaaagttctctgagctgctcaatactatttaagactgAGAATCTCAGGTCTATTTTAAGctctgggctctctctctttccccccactttttccctccc-ggggagaaggaaggaatctgatgagtgagtttggaagaataacctggAGTGAGTGCTCCCTTCACCAGTGGGTGGTGAGTTCCCCAGAAGGACTGCTTTCCTCCAAAGAGAGATAGGCAGGAAGAGGGAGGAGGGATGGGATCCTCTGGAGTAGGTACCATTTAAGGGGCACTTTTGAAAGTCAGTTTTTTAGacatccaagccactttctccagttcaattttaggagcaatagaagtaatgcattgttctccatctgacactgtcctcattccttcattcactttcatcagtagttctgaattccagagggaaggaa-ggggattacttaCTAAACTGTAATAGTCCATACCTAGCCTTGACA-TTT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5750892 656 +   6154872 aacca------tcttg--ctcttctcaataacatacctttttaaagaaaacatagttattttttctaaaatttattcatgtttacatggaataggcatataattgatgttctaaaggagttaataagtaaacatttgtaaagttctgagttataattactaatactgtaaatattgaaagatacaaccctgatccacaaaagttctttgagttcctcagtactatttaagactgAGAATCTCAGGTCTATTTGAAGctctgggctctctctctttccccctactttttctctcccaggggagaaggaaggaatctgacgagtgagtttggaagaataacctggAGTGAGTGCTCCCTTCACCAGTGGGTGGTGAGTTCCCCAGAAGGACTGCTTTCCTCCAAAGAGAGATAGGCAGGAAGAGGGAGGAGGGATGGGATCCTCTGGAGTAGGTACCATTTAAGGGGCACTtttgaaagtcaattttttggacatccaagccactttctccagttcaattttaggagcaatagaagtaatgcattgttctccatctgacactgtcctcattccttcattcagtttcatcagtagttctgaattccagagggaaggaa-ggggattacttactAAACTGTAATAGTCCATACCTAGCCTTGATATTTT
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    31287 661 +     39990 aaccatcttgctcttg--ctcttctcaataacatacctttttaaagaaaacatagttattttttctaaaatttattcatgtttacatggaataggcatataattgatgttccaaaggagttaatcagtaaacatttgtaaagttctgagttataattactaatactgtaaatattgaaagatataaccctgatcaacaaaagttctttgagttcctcaatactatttaagactgAGAATCTCGGGTCTATTTTAAGCTTTGGGCTctctctctttccccccactttttccctccc-agggggaaggaaggaatctgatgagtgagtttagaagaataacctggAGTGAGTGCTCCCTTCACCAGTGGGTGGTGAGTTCCCCAGAAGGACTGCTTTCCTCCAAAGAGAGATAGGCATGAATAGGGAGGAGGGATGGGATCCTCTGGAGTAGGTACCATTTAAGAGGCACTTTTGAAAGTCAATTTTTTAGacatccaagccacattctccagttcaattttaggaacaattgaagtaatgcattattctccatctgacactgtcctcattccttcattcattttcatcagtagttctgaattccagagggaaggaa-ggggattacttaCTAAACTGTAATAGTCCATACATAGCCTTGATATTTT
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s saiBol1.JH378357                   29361 643 -    242197 aatca------tcttggatcctcccTGATAACATAGCTTCTTAAAgaaaatat--ttattttttctaaaatttattcatgtttatgtggaataggcatataattgatgttgcaaaagagttaatcagtaaacatttgtgaagttctgagttataatttctaatactgtaaatattaaaagatacaaccttgatcaacaaaagttctttgagtt--ccaataatatttaagactgAGAATCCCAGGTCTATTCTAAGCTTTGGGCTctctctctttcctcttatgccttccctcccaggggagaagggagaaatctgatgagtgattttggaagaaTAACCCGGAGTGAGTAATCTCTTCACCAGTGAGTGG---GTTCACTAGAAGGACTGCTTCCCTCCAAAGAGAGATGGGCAGGGAGAGGGAGAAGGGATGAGATCCTCTAgagtaggtaccatttaaggggcactgttggaagtcaatgttttagacatccaagccatattctccagttcaattttaggagcaataaaagtaatgcattgttttccatctgacac---------tcattcattcatttttatcagtagttctgaattccagagaaaagcaagggggatcatttactaagcTGTAATAGTCCTTGCCAAGCCTTGATATTCt
i saiBol1.JH378357                N 0 I 370
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e colAng1.NW_012115566v1           2503884 3147 -   3067355 T
e manLeu1.NW_012099233v1             73748 2992 +    290775 T
e chlSab2.chr17                   28898219 2993 -  71996105 T
e cerAty1.NW_012002711v1            440010 2991 +    766320 T
e macNem1.NW_012011356v1           2688049 3018 -   2996164 T
e macFas5.chrUn_KE146120             19376   1 +     27237 I
e rheMac8.chr4                    29980635 2993 + 172585720 T

a score=663746.000000
s hg38.chr6_GL000254v2_alt          737053 749 +   4827813 TGTTTTTCTGAGTGAGTGAGAGAATTCAGGAAACTGAGGACTGTCTGTGTTGCCAGGAGCTCATCAGCTGCAAGGATAATAGAGACATTTCCACAAAAAACTAAAGAACCATAAGCCAGATGCTCACCTCCAAGGGAACTGTTGGCCCAGGGTAAAGGCACATAAAATGCCCAAATTGTATCCCCTGCCTGAACATAGCAGCAGCCCAACTCTGTGAGATCAACCTGCCTCTTACTTCCAGGCATccaaacttcacgggctaaagtcctaaccctgaatgtgacaatattttgagatagggcctttaaagagataattaaggctaaggagctcataagactgaggtcctaatcctaaagaattaaaatcctcataagaatagaaagtgtccccagggatgtgggtacacagaa-aaaggccatgtcatgacacagggagaaggcggccatctcaagtcaaagagggaggcctcaggggaagcccaccctgctgatacattgatcttgaacttccaagctccaggactctgagaaaataaatatctgctgtttgtagcctaatctatggcattttgttagaacaaaacacgctgactaaagacaGGCAGCCCGGATCAGCCCTTCTGTGCTCTAGGGCCAGGGTTTCTGCCATTCACTTATCAAAGGACAACATCAAATTATGTAAATCAAACTCTGTTTCAAATTCTAGTGTGATGTGAAACAAACTAATAGGAGATATGAACATGTCCC
s panTro5.chr6                    29711127 749 + 175400573 TGTTTTTCTGAGTGAGTGAGAGAATTCAGGAAACTGAGGACTGTCTGTGTTGCCAGGAGCTCATCAGCTGCAAGGATAATAGAGATGTTTCCACAAAAAACTAAAGAACCATAAGCCAGATGCTCACCTCCAAGGGAACTGTTGGCCCAGGGTAAAGGCACATAAAATGCCCAGATTGTATCCCCTGCCTGAACATAGCAGCAGCCCAACTCTGTGAGATCAACCTGCCTCTTACTTCCAGGCATccaaacttcacgggctaaagtcctaaccctgaatgtgacaatatttgcagatagggcctttaaagagataattaaggttaaggagctcataagactgaggtcctaatcctaaagaattaaaatcctcataagaatagaaagtgtccccagggatgtgggtacacagaa-aaaggccatgtcatgacacagggagaaggcggccatctcaagtcaaagagggaggcctcaggggaagcccactctgctgatacattgatcttgaacttccaagctccaggactctgagaaaataaatatctgctgtttgtagcctaatctatggcattttgttagaacaaaacacgctgactaaagacaGGCAGCCCGGATCAGCCCTTCTGTGCTCTAGGGCCAGGGTTTCTGCCATTCACTTATCAAAGGACAACATCAAATTATGTAAATCAAACTCTGTTTCAAATTCTAGTGTGACGTGAAACAAACTAATAGGAGATATGAACATATCCC
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29940879 749 + 173848474 TGTTTTTCTGAGTGAGTGAGAGAATTCAGGAAACTGAGGACTGTCTGTGTTGCCAGGAGCTCATCAGCTGCAAGGATAATAGAGACGTTTCCACAAAAAACTAAAGAACCATAAGCCAGATGCTCACCTCCAAGGGAACTGTTGGCCCAGGGTAAAGGCACATAAAATGCCCAGATTGTATCCCCTGCCTGAACATAGCAGCAGCCCAACTCTGTGAGATCAACCTGCCTCTTACTTCCAGGCATccaaacttcacgggctaaagtcctaaccctgaatgtgacaatatttgcagatagggcctttaaagagataattaaggttaaggagctcataagactgaggtcctaatcctaaagaattaaaatcctcataagaatagaaagcgtccccagggatgtgggtacacagaa-aaaggccatgtcatgacacagggagaaggcggccatctcaagtcaaagagggaggcctcaggggaagcccactctgctgatacattgatcttgaacttccaagctccaggactctgagaaaataaatatctgctgtttgtagcctaatctatggcattttgttagaacaaaacacgctgactaaagacaGGCAGTCCGGATCAGCCCTTCTGTGCTCTAGGGCCAGGGTTTCTGCCATTCACTTATCAAAGGACAACATCAAATTATGTAAATCAAACTCTGTTTCAAATTCTAGTGTGACGTGAAACAAACTAATAGGAGATATGAACATATCCC
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5751548 742 +   6154872 TGTTTTTCTGAGTGAGTGAGAGAATTCAGGAAACTGAGGACTGTCTGTGTTGCCAGGAGCTCATCAGCTGCAAGGATAATAGAGACGTTTCCACAAAAAACTAAAGAACCATAAGCCAGATGCTCACCTCCAAGGGA-------GCCCAGGGTAAAGGCACATAAAATGCCCAAATTGTATCCCCTCCCTGAACATAGCAGCAGCCCAACTCTGTGAGATCAACCTGCCTCTTACTTCCAGGCATccagacttcacgggctaaagtcctaaccctgaatgtgacagtatttggagatagggcctttaaagagataattaaggttaaggagctcataagactgaggtcctaatcctaaagaattaaaatcctcataagaatagaaagtgtcaccagggatgtgggcacacagaa-aaaggccatgtcatgacacagggagaaggcagccatctcaagtcaaagagggaggcctcaggggaggcccaccctgctgacatattgatcttgaacttccgagctccaggactctgagaaaataaataactgctgtttgtagcctaatctatggcattttgttagaacaaaccacgctgactaaAGACAGACAGCCCGGATCAGCCCTCCTGTGCTCTAGGGCCAGGGTTTCTGCCATTCACTTATCAAAAAACAACATCAAATTATGTAAATCAAACTCTGTTTCAAATTCTAGTGTGACATGAAACAAACTAATAGGAGATATGAACATGTCCC
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    31948 750 +     39990 TGTTTTTCTGAGTGAGTGAGAGAATTCAGGAAACTGAGAACTGTCTGTGTTGCCAGGAGCTCATCAGCTGCAATGATAATAGAGACGTTTCCACAAGAAACTAAAGAACAATAAGCCAGATGCTCACCTCCGGGGGAACTGTTGGCCCAGCGTAAAGACACATAAAATGCCCAAATTGTGTCCCCTCCTTGAACAGGGCAGTGGCCCAACTCTGTGAGATCAACCTGCCTCTTACTTCCAGGCATccaaacttcatgggcagaagtcctaaccctgaatgtgacaatatttggagatagggcctttaaagagataattaaagttaaagggctcataagactggggtcctaatcctaaaaaattgaaatcctcataagaacagaaagtgtccccagggatgagggtacacagaagaaaggccatgtcatgacacagggagaagatggccatctcaagccaaagagggaggcctcaggggaagcccaccctgctgacacattgatcttgaacttccaagctccaggactctgagaaaataaatatgtgctgtttgtagcctattctatggcattttgttagaacaaaccacactgactaaagacaGGCAGCCCGGATCAGCCCTTCTCTGCTCTAGGACCAGGGTTTCTGTCATTCGCTTATCAAAGGACAACATCAAATTATGTAAATCAAACTCTGCTTCAAATTCTAGTGTGACATGAAACAAACTAATAGGAGATATGAACATGTCCT
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e saiBol1.JH378357                   30004 370 -    242197 I
e otoGar3.GL873550                   17838 8883 +  18854210 I
e colAng1.NW_012115566v1           2503884 3147 -   3067355 T
e manLeu1.NW_012099233v1             73748 2992 +    290775 T
e chlSab2.chr17                   28898219 2993 -  71996105 T
e cerAty1.NW_012002711v1            440010 2991 +    766320 T
e macNem1.NW_012011356v1           2688049 3018 -   2996164 T
e macFas5.chrUn_KE146120             19376   1 +     27237 I
e rheMac8.chr4                    29980635 2993 + 172585720 T

a score=1794517.000000
s hg38.chr6_GL000254v2_alt          737802 1473 +   4827813 TATCAATTTTGTCATTTACACTAGGCAGAAATCAATATGATCCAAGTAACAGCATTTAAAGAATTGCTGTAATCTAAACATCTCAGAATTGCTTTAGAATGTATCACATTGAATATCTAAAATAAGAGAATGTACATTGCTTACCAGTATCACTGGCACATTTACAAACCTGAGCAAGTTTTCGGCAACAGAGAAAACAGTGTGAATTTCACATAACAGTCATAGTATTATACAAGTGACATTTTCCAAGTGAGTAAAAAACTGACAAATCAATTACAAGAACACTGGGAACAATCTCCAAAGACGTGTTCGTCGAATTCTAGTTAGAATATGGTTGGGAAGCCTCAAGAAGGCAGAGACAATGAAAACATGTGGAAACATGCAAGGTGGAAAGGTGGACTAGTGAGCGATGGATAACATCAGATGATGGGGGGTTAATGTCAGACTTGCAGGGCATTTTGCTACTTGCTGGGAATTTGCTAGGGTAGGAGGAAGGTGTGGCCTCTGCCCTACTGGGGCTTCAAGTGCAAATGAGGCAGGAGTACAATAAACTGATAACAACACACAACACAGAATACATAGAAAATAATTATAGACAATTATCTTCACA--TTAAAAGAAACAAACCTTTTAGAGAAGAGTCAAAAAGGGGTGGAGATTTAAATGGGGTGGTCTGGACAAACATCTTTAAGGAGTGAAGGGTGAAAAAGAGTAAAATGTACAGATAGTGTTGAGGGAGTGCTCTAAGCAGGGAAGGGAGAAAGGGACCTTGCAAGGTTGGGCGCGAGTCTGGTGCAAACAAGGGAGAGAGTGAATCCTGTGTGAGGATGTCATGGGACAAGGTCAAATGGTGCACCTGAGGACAACTCAGGGGGTGGACACCATCCTGAAATCTAAGAGTTACGCTGGCTGGGGTGCAATTGAACAAATGAAGCAGGGTGATGTGCTGCTGTGATGGCTATAGAGCATTGACGGGATGGAGCTGGGGCTGGTCAGGGGCTCTCATTAAGGTTCTGACCATGGTGGGTGCCGGGCAACACCCTGGTCAGGGTGGGGAAGAATGCATGACATTCTGCAGGGTGGGA--------------------------TTCCTGTGAAGAAGCACAGGCGCTAGATTGTGTGATGAGTCTGGGAAAAACACAGAGAGTAGCCTGTGCGTGGAACCTGGAATGAGCAGAGTGAAACAGCTTGGAGAAACCAG-----------GCTGTAGGCCAGACTGCCAGCGTTAGATCTCTCCACAGTGAGCAACGCCAGAAACAACTTGTTATGGCACTCTTACTGAATCGCTTTCCTGGCTTTTGTAGGAAGGGATGGATGGAAACTTGAGGCCAT-AATGGTGGAGGAACATCAGGATCATGAATCAGTCTCTGCCCAGGGGTCCCCAGGAAGGATGGACTGGGGTGACAGAGGACAGAACTCCGAGCAAGGTGACTGAATAAGGATGAATGACACTTGTCACTCTCAGAAATATGGAGCTTGC
s panTro5.chr6                    29711876 1473 + 175400573 TATCAATTTTGTCATTTACACTAGGCAGAAATCAATATGATCCAAGTAACAACATTTAAAGAATTGCTGTAATCTAAACATCTCAGAATTGCTTTAGAATGTATCACATTGCATATCTAAAATAAGAGAATGTACATTGCTTACCAGTATCACTGGCACATTTACAAACCTGAGCAAGTTTTCGGCAACAGAGAAAACAGTGTGAATTTCACATAACAGTCATAGTATTATACAAGTGACATTTTCCAAGTGAGTAAAAAACTGACAAATCAATTACAAGAACACTGGGAACAATCTCCAAAGACATGTTCGTCGAATTCTAGTTAGAAAATGGTTGGGAAGCCTCAAGAAGGCAGAGACAATGAAAACATGTGGAAACATGCAAGGTGGAAAGGTGGACTAGTGAGCGATGGATAACACCAGATGATGGGGGGTTAATGTCAGACTTGCAGGGCATTTTACTACTTGCTGGAAATATGCTAGGGTAGGAGGAAGGTGTGGCCTCTGCCCTACCGGGGCTTCAAGTGCAAATGAGGCAGGAGTACAATAAACTGATAACAACACACAACACAGAATACATAGAAAATAATTATAGACAATTATCTTCACA--TTAAAAGAAACAAATCTTTTAGAGAAGAGTCAAAAAGGGGTGGATATTTAAATGGGGTGGTCTGGACAAACATCTTTAAGGAGTGAAGGGTGAAAAAGAGTAAAATGTACAGATAGTGTTGAGGGAGTGCTCTAAGCAGGGAAGGGAGAAAGGGACCTTGCAAGGTTGGGCGCGAGTCTGGTGCAAACAAGGGAGAGAGTGAATCCTGTGTGAGGATGTCATGGGACAAGGTCAAATGGTGCACCTGAGGACAACTCAGGGGGTGGACACCATCCTGAAATCTAAGAGTTACGCTGGCTGGGGTGCAATTGAACAAATGAAGCAAGGTGATGTGCTGCTGTGATGGCTATAGAGCATCGATGGGATGGAGCTGGGGCTGGTCAGGGGCTCTCATTAAGGTTCTGACCATGGTGGGTGCCGGGCAACACCCTGGTCAGGGTGGGGAAGAATGCATGACATTCTGCAGGGTGGGA--------------------------TTCCTGTGAAGAAGCACAGGCACTAGATTGTGTGATGAGTCTGGGAAAAACACAGAGAGTAGCCTGTGTGTGGAACCTGGAATGAGCAGAGTGAAACAGCTTGGAGAAACCAG-----------GCTGTAGGCCAGACTGCCAGCGTTAGATCTCTCCACAGTGAGCAACGCCAGAAAGAACTTGTTATGGCACTCTTACTGAATCGCTTTCCTGGCTTTTGTAGGAAGGGATGGATGGAAACTTGAGGCCAT-AATGGTGGAGGAACATCAGGATCATGAATCAGTCTCTGCCCAGGGGTCCCCAGGAAGGATGGACTGGGGTGACAGAGGACAGAACTCTGAGCAAGGTGACTGAATAAGGATGAATGACACTTGTCACTCTCAGAAATATGGAGCTTGC
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29941628 1473 + 173848474 TATCAATTTTGTCATTTACACTAGGCAGAAATCAATATGATCCAAGTAACAACATTTAAAGAATTGCTGTAATCTAAACATCTCAGAATTGCTTTAGAATGTATCACATTGCATATCTAAAATAAGAGAATGTACATTGCTTACCAGTATCACTGGCACATTTACAAACCTGAGCAAGTTTTCGGCAACAGAGAAAACAGTGTGAATTTCACATAACAGTCATAGTATTATACAAGTGACATTTTCCAAGTGAGTAAAAAACTGACAAATCAATTACAAGAACACTGGGAACAATCTCCAAAGACATGTTCGTCGAATTCTAGTTAGAAAATGGTTGGGAAGCCTCAAGAAGGCAGAGACAATGAAAACATGTGGAAACATGCAAGGTGGAAAGGTGGACTAGTGAGCGATGGATAACACCAGATGATGGGGGGTTAATGTCAGACTTGCAGGGCATTTTACTACTTGCTGGAAATATGCTAGGGTAGGAGGAAGGTGTGGCCTCTGCCCTACCGGGGCTTCAAGTGCAAATGAGGCAGGAGTACAATAAACTGATAACAACACACAACACAGAATACATAGAAAATAATTATAGACAATTATCTTCACA--TTAAAAGAAACAAATCTTTTAGAGAAGAGTCAAAAAGGGGTGGATATTTAAATGGGGTGGTCTGGACAAACATCTTTAAGGAGTGAAGGGTGAAAAAGAGTAAAATGTACAGATAGTGTTGAGGGAGTGCTCTAAGCAGGGAAGGGAGAAAGGGACCTTGCAAGGTTGGGCGCGAGTCTGGTGCAAACAAGGGAGAGAGTGAATCCTGTGTGAGGATGTCATGGGACAAGGTCAAATGGTGCACCTGAGGACAACTCAGGGGGTGGACACCATCCTGAAATCTAAGAGTTACGCTGGCTGGGGTGCAATTGAACAAATGAAGCAAGGTGATGTGCTGCTGTGATGGCTATAGAGCATCGATGGGATGGAGCTGGGGCTGGTCAGGGGCTCTCATTAAGGTTCTGACCATGGTGGGTGCCGGGCAACACCCTGGTCAGGGTGGGGAAGAATGCATGACATTCTGCAGGGTGGGA--------------------------TTCCTGTGAAGAAGCACAGGCACTAGATTGTGTGATGAGTCTGGGAAAAACACAGAGAGTAGCCTGTGTGTGGAACCTGGAATGAGCAGAGTGAAACAGCTTGGAGAAACCAG-----------GCTGTAGGCCAGACTGCCAGCGTTAGATCTCTCCACAGTGAGCAACGCCAGAAAGAACTTGTTATGGCACTCTTACTGAATCGCTTTCCTGGCTTTTGTAGGAAGGGATGGATGGAAACTTGAGGCCAT-AATGGTGGAGGAACATCAGGATCATGAATCAGTCTCTGCCCAGGGGTCCCCAGGAAGGATGGACTGGGGTGACAGAGGACAGAACTCTGAGCAAGGTGACTGAATAAGGATGAATGACACTTGTCACTCTCAGAAATATGGAGCTTGC
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5752290 1500 +   6154872 TATCAATTTTGTCATTTACACTAGGCAGAAATCAATATGATCCAAGTAACAACATTTAAAGAATTACTGTAATCTAAACATCTCAGAATTGCTTTAGAATGTATCACGTTGCATATCTAAAATAAGAGAATGTACATTGCTTACCAGTATCATTGGCACATTTACAAACCTGAGCAAGTTTTAGGCAACAGAGAAAACAGTGTGAATTTCACATAACAGTCATAGTATTATACAAGTGGCAATTTCCAAGTGAGTAAAAAAGTGACAAATCAATTACAAGAACACTGGGAACAATCTCCAAAGACATGCTCGTCGAATTCTAGTTAGAATATGTTTGGGAAGCCTCAAGAAGGCAGAGACAATGAAAACATGTGGAAACATGCAAGGTGGAAAGGTGGACTAGTGAACGATTGATAACACCAGCTGATGGGGGGGTAAAGTCAGACTtgcagggcattttgctactcgctgggaatatgctagggtacgaggaaggtgtggcctctgccctactggggcttcaagtgcaaatgaagcaggagtacaataaactgataataacaCACAACACGGAATATATAGAAAATAATTATAGACAATTATCCTCACA--TTAAAAGAAACAAACCTTTTAGAGAAGAGTCAAAAAGGGGTGGATATTTAAGTGGGGTGGTCTGAGCAAACATCTTTAAGGAGTGAAGGGTGAAAAAGAGTAAAATGTACAGATAGTGTTGAGGGAGTGCTCTAAGCAGGGAAGGGAGAAAGGGACCTTGCAAGATTGGGAGTGAGTTTGGTGCAAACAAGGGAGAGAGTGAATCCTGTGTGAGGATGTCATGCAACAAGGTCAAATGCTGCACCTGAGGACAACTCAGGGGGTGGACACCATCCTGAAATCTAAGAGTTACGCTGGCTGGGGGGCAATTGAACAAATGAAGCAGGGTGATGTGCTGCTGTGATGGCTATAGAGCATTGATGGGATGGAGCTGGGGCTGCTCAGGGGCTCTTATTAAGGTTCTGACCATGGTGGGTGCCAGGCAACACCCTGGTCAGGGTGGGGAAGAATGCATGACATTCTACAGGGTGGGATTGGAGGAACAGCTGATGTGGTAGGCTTCCTGTGAAGAAGCAGAGACACTAGATTGTGTGATGAGTCTGGGAAAAACACAGAGAGTAGCCTGTGCATGGAACCTGGAGTGAGCAGGGTGGAACAGCTTGGAGAAACCAA-----------GCTGTAGGCTGGACTGCCAGCATTAGGTCTCTCCATGGTAAGCAATGCCAGAAACAACTTGTTATGGCGCTCTTACTGAATCACTTTCCTGGCTTTCGTAGGAAGGGATGGATGGAAACTTAAGGCTATAAATGGTGGAGGAACATCAGGATCATGAATCAGTCTCTGCCCAGGGGTCCCCAGGAAGGATGCACTGGGGTGGTAGAAGCCAGAACTCTGAGCAAGGTGACTGAATAAGGATGAAGGATGCTTGTCACTCTCAGAAATATGGAGCTTGC
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    32698 1509 +     39990 TATCAATTTTGTCATTTACACTAGGTAGAAATCAATATGATCCAAGTAACAACATTTAAAGAATTGCTGTAATCTAAACATCTCAGAATTGC-TTAGAATGTATCATGTTACATATCTAAAATAAAAGAAAGTACATTGCTTATCAGTATCATTGGCACATTTACAAACCTGAGCAAGTTTTAGGCAACAGAGAAAACAGTGTGAATTTCACATAACAGTCATAGTATTATACAAGTTACATTTTCCAAGTGAGTAAAAAACTGACAAATCAATTACAAGAACACTGGGAACAATCTCCAAAGACATGCTCCTCGAATTCTAGTTACACTGTTGTTGGGAAGCCTCAAGAAGGCAGAGACAATGAATACATGTGGAAACATCCAAGGTGAAAAGGTGGACTAGTGAGTGATTGATAACACCATCTGATGGGGGGGTAATGTCAGACTtgcagggcattttgctactccctgggaatatgctagggtacaaggaaggtgcggtctctgccctactggggcttcgagtgcaaatgaggcaggagtacaataaactgataaTAACACACAACATGGAATACACAGAAAATAATTATAGACAATTATCCTCACA--TTAAAAGAAACAAACCTTTCAGAGAAGAGTCAAAAAGGGGTGGATATTTAAGTGGGGTGGTCTGGACAAACATCTTCAAGGAGTGAAGGGTGAAAAAGAGTAAAATGTACAGATAGTGTTGAGGGAGTGCTCTAAGCAGAGAAGGGAGAAAGTGACCTTGCAAGGTTGGGTGTGACTTTTGTGCAAACAAGGAAGAGAGTGAATCCTGTGTGAGGATGTCATGGGACAAGGTCAAATGGTACACCTGAGGACAACTCAGGGGTTGGACACCATCCTGAAATCTAAGAGTTACTCTGGCTGGGGGGCAATTGAACAAATGAAGCAGGGTGATGTGCTGCTGTGATGGTTATAGGGCATTGACGGGATGGAGCTGGGGCTGGTCAGGGGCTCTCATTAAGGTTCTGACCATGGTGGGTGCCGGGCAACACCCTGGTCGGGGTGGGGAAGAATGCATGACATTCTGCAGGGTAGGATTGGAGGAACAGCTGATGTGGTGGGCTTCCTGTGAAGAAGCACAGGTGCTAGATTGTGTGATGAGTCTGGGAAAAACACAGAGAGTAGCCTGTGTGTGGAACCTGGAATGAGCAGAGTGAAACAGCTTGGAGAAACCAGCTGTTTCTCCAAGTGTAGGCTGGACTGCCAGCGTTAGGTCTCTCCACAGTGAGCAACGCCAGAAACAACTTGTTATGGCGCTCTTACTGAATCACTTTCCTGGCTTTCGTAGGAAGGGATGGATGGAAACTTGTGGCTAT-AATGGTGGAGGAACATCAGAAGCATGAATCAGTCTCTGCCCAGGAGTCCCCAGGAAGGATGGACTGGGGTGGCAGAGGCCAGAACTCTGAGCAAGGTGACTGAATAAGGATGAAGGATGCTTGTCACTCTCAGAAATATGGAGCTTGC
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s saiBol1.JH378357                   30374 1418 -    242197 TATCAATTTTGTCATTTATGCTAGGAAGAAATAAATATGATCCAAGTAACAACATTTAAAGAATTACTTTAGCCTAAATATCTCAGAATTGCTTTAGAATGTGTCACTTTGCATATCTAAAATAAGAGAATGTACATTGCTTATCAGTATCATTGGCATGTATACAAACCTG-----------------------------------------------------------ACAAGTCACATTTTCCGAGTGAGTAAAAAATTGACAAATCAATTGCAAGAACACTGGGAACAATCTCCAAAGACATGCTTCTGGAGTTCTAGTTAGAATATTGTTGGGAAGCCTCAAGAAGGCACAGACAATGAAAACGTGTGGAAACATGCAAGGTGGAAAGGTAGACTAGAGAGTGATTGATACCACCAGCTGATGGGGGA-TGATGTCAGatttgcagggcattttgctactcgctaggaatatagtaggatacaaggaaggtgtggtctctgccctactggagtttcgagtgcagatgaggcaagtgtacaataaaATGATAATAACACACAATGTGGAATACACAGAAAATAATTATAGACTATTATACTCATATTTTTAAAAAAACAAACCTTTAAGAGAAGAGTCAAAA--GGGTGGATACTTAAGTGAGGTGGTCTGGACAAACATCTTTAAAGAGTGAAAGGTGAAAAAGAGTAAAATACACAGATAGTGTTGAGGGAGTGCTCTAAGCAGGAAAGGGAAGGAGGGACCTTGCAATGTTGGGGGTTAGTTTGGGGTAAACAAGGAATAGAGGGAATCCTGTGTGGGGATGTCATGGGACGAGGTCAAATGGTGCACATGA-GACAACTCAAGGG-TGGACACCATCTTGAAATCCAAGAGTTAGGCTGGA-GGAGGACAAATGAACAAATGAAGCAGGGTGATGTATTGCTGTGATGGCTGTAGAGCATTAATAGGATGGAGCTAGGACTGATCAGGGGTTCTCACTGAGGTTCTGATCATGATGGGTGCTGGGCAGTGCTCTGGTCAGGGTGGGGAAGAATGCATGACATTCTGCGGGGAGGGATTGGAGAAACAGCTGCTGTGGTGGGCTTCCTGTGAAGAAGCAGAGGCACTAGGTGGTGTGACGAGTCTGGGAAAAACACAGAGAGTGGCCTGTGTATGGAACGTGGACAGAGCATGGTGGTACTGCTTGGAGAAACCAG-----------GCTGCAGCCTGGACTACCAGCATTAGATTTCTTCACAGTAAGCAATGCCAAAACCAACTTGTTATGGTATTCTTACTGAATCACTTTCCTGGCTTTCTTAGGAAGGAATGGACGGAAAGTTGAGGCTATAAATGGTGGAGAAACATCAGGATCATGAATCAGTATCTGTCCAGGGGTCCCCAGGAAAGATGGACTGGGGTGGCAGAGACCAGAACTCTGAGCAGGGTGACTAAATA-------------------ACACTCAGAAATACAGAGCTTGC
i saiBol1.JH378357                I 370 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e colAng1.NW_012115566v1           2503884 3147 -   3067355 T
e manLeu1.NW_012099233v1             73748 2992 +    290775 T
e chlSab2.chr17                   28898219 2993 -  71996105 T
e cerAty1.NW_012002711v1            440010 2991 +    766320 T
e macNem1.NW_012011356v1           2688049 3018 -   2996164 T
e macFas5.chrUn_KE146120             19376    1 +     27237 I
e rheMac8.chr4                    29980635 2993 + 172585720 T

a score=1115.000000
s hg38.chr6_GL000254v2_alt          739275 2 +   4827813 AG
s panTro5.chr6                    29713349 2 + 175400573 AG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29943101 2 + 173848474 AG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5753790 2 +   6154872 AA
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    34207 2 +     39990 AA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e saiBol1.JH378357                   31792 0 -    242197 C
e otoGar3.GL873550                   17838 8883 +  18854210 I
e colAng1.NW_012115566v1           2503884 3147 -   3067355 T
e manLeu1.NW_012099233v1             73748 2992 +    290775 T
e chlSab2.chr17                   28898219 2993 -  71996105 T
e cerAty1.NW_012002711v1            440010 2991 +    766320 T
e macNem1.NW_012011356v1           2688049 3018 -   2996164 T
e macFas5.chrUn_KE146120             19376 1 +     27237 I
e rheMac8.chr4                    29980635 2993 + 172585720 T

a score=428381.000000
s hg38.chr6_GL000254v2_alt          739277 832 +   4827813 AAGCCAGGAAggttgaactagtttacagtcccaccaacagtgtaaagatgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatggtatctcatcgtggttttgatttgcatttctctgatggccagtgactataaactagttcaaccattgtagaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatataccgaaaggattgtaaatcatgctgctataaagacacatgcacacgtatgtttattatgacactattcacaatagcaaagacttgaaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacgccatggaatactatgcagccat-aaaaaatgatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactagtgcaaggacaaaaaaaccaaacaccgcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacactctggggcctgttgtggggtggggtgaagggggagggatagcactaggagatatacctaatgttaaatgatgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacatgcacgttgtgcacatgtaccctaaaacttaaagtataataaaaaaagaaaaataaaat-------------------------------aaaataaaataaaataattagctggaaaaaaaaaaaaaaaGA
s panTro5.chr6                    29713351 858 + 175400573 AAGCCAGGAAggttgaactagtttacagtcccaccaacagtgtaaagatgttcctatttctccacatcctctccagcacctgttgtttcctgaatttttaatgatcaccattctaactggtgtgagatggtatctcatcgtggttttgatttgcatttctctgatggccagtgactgtaaactagttcaaccattgtagaagtcagtgtggcgattcctcaaggatctagaactagagataccatttgacccagccatccctttactgggtatatacccaaaggattgtaaatcatgctgctataaagacacatgcacatgtatgtttattacaacactattcacaatagcaaagacttgaaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatatgccatggaatactatgcagccat-aaaaaatgatgagttcatatcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactagtgcaaggacaaaaaaaccaaacaccacatgttctctctcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacacactggggcctgttgtggggtggggtgaggggggagggatagcactaggagatatacctaatgttaaatgatgagttaatgggtgtagcacaccaacatggcacatgtatacatatgtaacaaacatgcacgttgtgcacatgtaccctaaaacttaaagtatagtaaaaaaataaaaataaaataaaataaaataataaaataaaataaaataaaaaaataaaataaaataattagctggaaaaaaaaaAA-----A
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29943103 818 + 173848474 AAGCCAGGAAggttgaactagtttacagtcccaccaacagtgtaaagatgttcctatttgtccacatcctctccagcacctgttgtttcctgaatttttaatgatcaccattctaactggtgtgagatggtatctcatcgtggttttgatttgcatttctctgatggccagtgactgtaaactagttcaaccattgtagaagtcagtgtggcgattcctcaaggatctagaactagagataccatttgacccagccatccctttactgggtatatacccaaaggattgtaaatcatgctgctataaagacacatgcacatgtatgtttattacaacactattcacaatagcaaagacttgaaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatatgccatggaatactatgcagccat-aaaaaatgatgagttcatatcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactagtgcaaggacaaaaaaaccaaacaccacatgttctctctcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacacactggggcctgttgtggggtggggtgaggggggagggatagcactaggagatatacctaatgttaaatgatgagttaatgggtgtagcacaccaacatggcacatgtatacatatgtaacaaacatgcacgttgtgcacatgtaccctaaaacttaaagtatagtaaaaaaataaaaaT------------------------------------AAAATAAAATAAAATAATTAGCTGGAAAAAAA---------A
i panPan2.chr6                    C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    34209 831 +     39990 AAGCCAGGAAggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatggtatctcattgtggttttgatttgtatttctctgatgaccagtgactgtaaactagttcaaccattgtagaaatcagtatggcgattcctcagggatctagaactagaaataccatttgactcagtcatcccattactgggtatatacccaaaggattataaatcatgctgctagaaagacacatgcacatgtatgtttattgcggcactattcacaacagcaaagacttggaaccaacccacatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaaatgatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactagcgcaaggac-aagaaaccaaacaccgcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacacactggggcctgttgtggggtggggggagggggcagggatagcattaggagatacacctaatgttaaatgaggagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacattgtgcacatgtaccctaaaacttaaagtataataataaaaaaagaaACaaa--------------------------------aaataaaaataaaaaaatcagctggaaaaaaaaaaaaaaaaa
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e saiBol1.JH378357                   31792   0 -    242197 C
e otoGar3.GL873550                   17838 8883 +  18854210 I
e colAng1.NW_012115566v1           2503884 3147 -   3067355 T
e manLeu1.NW_012099233v1             73748 2992 +    290775 T
e chlSab2.chr17                   28898219 2993 -  71996105 T
e cerAty1.NW_012002711v1            440010 2991 +    766320 T
e macNem1.NW_012011356v1           2688049 3018 -   2996164 T
e macFas5.chrUn_KE146120             19376   1 +     27237 I
e rheMac8.chr4                    29980635 2993 + 172585720 T
e gorGor5.CYUI01015250v1           5753792   0 +   6154872 C

a score=1910.000000
s hg38.chr6_GL000254v2_alt          740109 2 +   4827813 AG
s panTro5.chr6                    29714209 2 + 175400573 AG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29943921 2 + 173848474 AG
i panPan2.chr6                    C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    35040 2 +     39990 ag
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s saiBol1.JH378357                   31792 2 -    242197 AG
i saiBol1.JH378357                C 0 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e colAng1.NW_012115566v1           2503884 3147 -   3067355 T
e manLeu1.NW_012099233v1             73748 2992 +    290775 T
e chlSab2.chr17                   28898219 2993 -  71996105 T
e cerAty1.NW_012002711v1            440010 2991 +    766320 T
e macNem1.NW_012011356v1           2688049 3018 -   2996164 T
e macFas5.chrUn_KE146120             19376 1 +     27237 I
e rheMac8.chr4                    29980635 2993 + 172585720 T
e gorGor5.CYUI01015250v1           5753792 0 +   6154872 C

a score=452754.000000
s hg38.chr6_GL000254v2_alt          740111 348 +   4827813 AAGCCAGGAAGGTCTGCTTTGCTCCTGACCTGCCTTTCCAGAGGGTTTCCATGGGAATTGAGAATAATGGGCTATCAACAGAAGCAAAGTAATTTTGTCTTGAATTCAGTCAGAAATCTGGTTACTCTGAAAATACACAAAGGTAATAAATAATCTCAAGAACATTCACCCTGCTCCTTGGAGGATCCAGCATGTTTTCCAGACATGATCCCTTTTACAGCCTTGTGCATAGGCAGTCCCTGCCTTTGTGGAGGAGCTGAGCCCCCTAGAAGAGCAGTTTGTTTCCAGCTGTGAGGCTGAAATCTGCCCTGGGATCGGGGGCCTGAAACGCCTCATTTTATCCATGCC
s panTro5.chr6                    29714211 348 + 175400573 AAACCAGGAAGGTCTGCTTTGCTTCTGACCTGCCTTTCCAGAGGGTTTCCATGGGAATTGAGAATAATGGGCTATCAACAGAAGCAAAGTAATTTTGTCTTGAATTCAGTCAGAAATCTGGTTACTCTGAAAATACACAAAGGTAATAAATAATCTCAAGAACATTCACCCTGCTCCTTGGAGGATCCAGCATGTTTTCCAGACATGATCTCTTTTACAGCCTTGTGCATAGGCAGTCCCTGCCTTTGTGGAGGAGCTGAGCCCCCTAGAAGAGCAGTTTGTTTCCAGCTGTGAGGCTGAAATCTGCCCTGGGATCGGGGGCCTGAAACACCTCATTTTATCCATGCC
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29943923 348 + 173848474 AAACCAGGAAGGTCTGCTTTGCTTCTGACCTGCCTTTCCAGAGGGTTTCCATGGGAATTGAGAATAATGGGCTATCAACAGAAGCAAAGTAATTTTGTCTTGAATTCAGTCAGAAATCTGGTTACTCTGAAAATACACAAAGGTAATAAATAATCTCAAGAACATTCACCCTGCTCCTTGGAGGATCCAGCATGTTTTCCAGACATGATCTCTTTTATAGCCTTGTGCGTAGGCAGTCCCTGCCTTTGTGGAGGAGCTGAGCCCCCTAGAAGAGCAGTTTGTTTCCAGCAGTGAGGCTGAAATCTGCCCTGGGATCGGGGGCCTGAAACGCCTCATTTTATCCATGCC
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5753792 348 +   6154872 AAGCCAGGAAGGTCTGCTTTGCTCCTGACCTGCCTTTCTAGAGGGTTTCCATGGGAACTGAGAATAATGGGCTATCAACAGAAGCAAAGTAGTTTTGTCTTGAACTCAGTCAGAAATCTGGTTACTCTGAAAATACACAAAGGTAATAAATAATCTCAAGAGCGTTCGCCCTGCACCTTGGAGGATCCAGCATGTTTTCCAGACATGATCTCTTTTACAGCCTTGTGCATAGGCAGTCCCTGCCTTTGTCGAGGAGATGAGCCCCCTAGAAGAGCAGTTTGTTTCCAGCTGTGAGGCTGAAATCTGCCCTGGGATCGGGGGCCTGAAACGCCTAATTTTATCCATGCC
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    35042 348 +     39990 aaGCCAGGAAGGTCTGCTTTGCTCCTGACCTGCCTTTCCAGAGGATTTCCATGGGAATTGAGAATAATGGGCTATCTACAGAAGCAAAATAATTTTGTCTTGAATTCAGTCAGAAATCTGGTTACTCTGAAAATACACAAAGGTAATAAATAATCTCAAGAATGTTCACCCTGCACCTTGGAGGATCCAGCATGTTTTCCAGACACGATCTCTTTTACAGCCTTGTGCATAGGCAGTCCCTGCCTTTGTCGAGGAGCTGAGCACCCTAGAAGAGCAGTTTGTTTCCAGCTGTGAGGCTGAAATCTGCCCTGGGATCGGGGGCCTGAAACGCCTCATTTTATCCATGCC
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s saiBol1.JH378357                   31794 348 -    242197 AAGTCAGGAAGGTCTGCTCTGCTCCCAACCTGCCTTCCCAGAGGGTTCCTTTGGGAATTGAGAATAATGAGTTATCAACAGAAGTAAAGTAATTTTGTCTTGAATTCATTCAGAAACTTGGTTACTCTGAAAATACACAAAGGTAATAAATAATCTCAAGAGCATTCACCCTGCACCTTGGAGGATCCAGCATGTTTTTCACACCCAATCTCTTTTACAGCCTTGTTCATAGGCTGTCCATGCCTTTGTCAAGGAGCTGAGCCCACTAGAAGAGCAGTTTGTTTCCAGCTGTGAGGCTGAGATCTGCCCTTGGATTGGTGGCCTGAAATGCCTCATTTTATCCATGCC
i saiBol1.JH378357                C 0 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e colAng1.NW_012115566v1           2503884 3147 -   3067355 T
e manLeu1.NW_012099233v1             73748 2992 +    290775 T
e chlSab2.chr17                   28898219 2993 -  71996105 T
e cerAty1.NW_012002711v1            440010 2991 +    766320 T
e macNem1.NW_012011356v1           2688049 3018 -   2996164 T
e macFas5.chrUn_KE146120             19376   1 +     27237 I
e rheMac8.chr4                    29980635 2993 + 172585720 T

a score=5148855.000000
s hg38.chr6_GL000254v2_alt          740459 986 +   4827813 TCCATCTCACTCAACAAAGCCCTCTGAAAAACAGCCTTTAGGGACTCCCTGTGCCTCTTCCTGTAGAGTTACTCAGCCAAGAAGTAGATGACTAGGTGAGGCATGCTGACCACAATGGACAGTAGCAACAGGAGGTCAAAGGCAAGGGTCAGAAA---CTTTCCTGGCAGGCACACAAGGACAACTAAGGGCAGGACCCAAAGGAAGAAGCTGATGATCACAAAGCAGACAACATGATAGGTCCTGATGGGGGAACACCACTGGGGACAGCACAGACCCCAGATGATCAGGATCAGCTTGGACATGCCCATTACAAAGCAAATAAGTACATGACATGTCATAAAGCCT-CATGAAATTGGTCACATGCCAAGCACTTCTCCCAGTACTCACAGACCTGGCTAACTGCATACAAAGAAAGGGCCAGGGCCCA---------CCTCACCATGGCAGAGGTGTGCTCTGGGCGGTGGCAGCACCAGGTGGGACAGAGGGCACAGAGAAAGCTCTCAATACTCATGGCCACCAGGAGACAGAGACCCACTGTGTCGGAGAAATAGGAGACAGGATCCAGAAACACAGCCACCTGCAATGCCGCCTGGTGATACAGCATGAGGATTTTCTCCAGCAGGATCACAGTTACACAGGAGAGGTTGACCATATCAACAGTGGCCAGGTTAAGGATGTAGGTCACATAGGGGC-TGCTCCAGACCTGTGAGTAGAGAAGCCAGCAGATCACATCATTGCCTACCAGTCCACAGAGGGCCACCAGCACTGTCA-GGGAGAAGACCACCTGCCTGTCCACCAACCACTCACCTCCCGTATGGCTCATGTTCACATGTCCTGAGGTCTCAGTCTCATTGTCCCAATCCAGCTTTCCAGAGAGGGTTGCGAGAAGCTAGGCTATGGTGGGCTACCTTTGCTGCCTGCGCACATCCTGCAAAAACAAAGGCTGGTAACATACCAGGTCTGGAGAGGAGAGTCAGGGTTGCCCTCTG
s panTro5.chr6                    29714559 985 + 175400573 TCCATCTCACTCAACAAAGCCCTCTGAAAAACAGCCTTTAGGGACTCCCTGTGCCTCTTCCTGTAGAGGTACTCAGCCAAGAAGTAGATGACTAGGTGAGGCATGCTGACCACAATGGACAGTAACAACAGGAGGTCAAAGGCAAAGGTCAGAAA---CTTTCCTGGCAGGCACACAAGGACAACTAAGGGCAGGACCCAAAGGAAGAAGCTGATGATCACAAAGCAGACAACATGGTAGGTCCTGATGGGGGAACACCACTGGGGACAGCACAGACCCCAGATGATCAGGATCAGCTTGGACATGCCCATTACAAAGCAAATAAGTACATGACATGTCATAAAGCCT-CATGAAATTGGTCACAAGCCAAGCACTTCTCCCAGTACTCACAGACCTGGCTAACTGCATACAAAGAAAGGGCCAGGGCCCA---------CCTCACCATGGCAGAGGTGTGCTCTGGGCGGTGGCAGCACCAGGTGGGACAGAGGGCACAGAGAAAGCTCTCAATACTCATGGCCACCAGGAGACAGAGACCCACTGTGTCGGA-AAATTGGAGACAGGATCCAGAAACACAGCCACCTGCAATGCCACCTGGTGATACAGCATGAAGATTTTCTCCAGCAGGATCACAGTTACACAGGAGAGGTTGACCATATCAACAGTGGCCAGGTTAAGGATGTAGGTCACATAGGGGC-TGCTCCAGACCTGTGAGTAGAGAAGCCAGCAGATCACATCATTGCCTAACAGTCCACAGGGGGCCACCAGCACTGTCA-GGGGGAAGACCACCTGCCTGTCCACCAACCACTCGCCTCCCGTATGGCTCATGTTCACATGTCCTGAGGTCTCAGTCTCATTGTCCCAATCCAGCTTTCCAGAGAGGGTTGCAAGAAGCTAGGCTATGGTGGGCTGCCTTTGCTGCCTGCGCACATCCTGCAAAAACAAAGGCTGGTAACCTACCAGGTCTGGAGAGGAGAGTCAGGGTTGCCCTCTG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29944271 985 + 173848474 TCCATCTCACTCAACAAAGCCCTCTGAAAAACAGCCTTTAGGGACTCCCTGTGCCTCTTCCTGTAGAGGTACTCAGCCAAGAAGTAGATGACTAGGTGAGGCATGCTGACCACAATGGACAGTAGCAACAGGAGGTCAAAGGCAAAGGTCAGAAA---CTTTCCTGGCAGGCACACAAGGACAACTAAGGGCAGGACCCAAAGGAAGAAGCTGATGATCACAAAGCAGACAACATGGTAGGTCCTGATGGGGGAACACCACTGGGGACAGCACAGACCCCAGATGATCAGGATCAGCTTGGACATGCCCATTACAAAGCAAATAAGTACATGACATGTCATAAAGCCT-CATGAAATTGGTCACAAGCCAAGCACTTCTCCCAGTACTCACAGACCTGGCTAACTGCATACAAAGAAAGGGCCAGGGCCCA---------CCTCACCATGGCAGAGGTGTGCTCTGGGCGGTGGCAGCACCAGGTGGGACAGAGGGCACAGAGAAAGCTCTCAATACTCATGGCCACCAGGAGACAGAGACCCACTGTGTCGGA-AAATTGGAGACAGGATCCAGAAACACAGCCACCTGCAATGCCACCTGGTGATACAGCATGAAGATTTTCTCCAGCAGGATCACAGTTACACAGGAGAGGTTGACCATATCAACAGTGGCCAGGTTAAGGATGTAGGTCACATAGGGGC-TGCTCCAGACCTGTGAGTAGAGAAGCCAGCAGATCACATCATTGCCTAACAGTCCACAGGGGGCCACCAGCACTGTCA-GGGGGAAGACCACCTGCCTGTCCACCAACCACTCGCCTCCCGTATGGCTCATGTTCACATGTCCTGAGGTCTCAGTCTCATTGTCCCAATCCAGCTTTCCAGAGAGGGTTGCAAGAAGCTAGGCTATGGTGGGCTGCCTTTGCTGCCTGCGCACATCCTGCAAAAACAAAGGCTGGTAACCTACCAGGTCTGGAGAGGAGAGTCAGGGTTGCCCTCTG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5754140 985 +   6154872 TCCATCTCACTCAACAAAGCCCTCTGAAAAACAGCCTTTAGGGACTCCCTGTGCCTCTTCCTGTAGAGGTACTCAGCCAAGAATTAGATGACTAGGTGAGGCATGCTGACCACAATGGACAGCAGCAACAGGAGGTCAAAGGCAAGGGTAAGAAA---CTTTTCTGGCAGGTACACAAGGACAACTAAGGGCAGGACCCAAAGGAAGAAGCTGATGATCACAAAGTGGATAACGTGGTAGGTCCTGATGGGGGAACGCCACTGGGGACAGCACAGGCCCCAGATGATCAGGATCAGCTTGGACATGCCCATTACAAAGCAAATAAGTACATGACATGTCATAAAGCCT-CATGAAATTGGTCACTTGCCAAGCACTTCTCCCAGTACTCACAGACCTGGCTAACTGCATACAAAGGAAGGGCCAGGGCCCA---------CCTCACCATGGCAGAGGTGTGCTCTGGGCGATGGCAGCACCAGGTGGGACAGAGGTCACAGAGAAAGCTCTCAATACTCATGGCCACCAGGAGACAGAGACCCACTGTGTCGGAGAAATAGGACACAGGCTCCAGAAACACGGCCACCTGCAACGCCGCCCGGTGATACAGCATGAGGATTTTCTCCAGCAGGATCACAGTGACACAGGAGAGGTTG-CCATATCAACAGTGGCCAGGTTAAGGATGTAGGTCACATAGGGGC-TGCTCCAGACCTGTGAGTAGAGAAGCCAGCAGATCACATCATTGCCTACCAGTCCACAGAGGGCCACCAGCACTGTCA-GGGGGAAGACCACCTGCCTGTCCACAAAACACTCGCCTCCCGTATGGCTCATGTTCACATGTCCTGAGGTCTCAGTCTCATTGTCCCAATCCAGCTTTCCAGAGAGGGTTGCGAGAAGCTAGGCTATGGTGGGCTGCCTTTGCTGCCTGGGCACATCCTGCAAAAACAAAGGCTGATAACCTACCAGGTCTGGAGAGGAGAGTCAGGGTTGCCCTCTG
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    35390 986 +     39990 TCCATCTCACTCAACAAAGCCCTCTGAAAAACAGCCTTTAGGGAATCTCTGTGCCTCTTCCTGCAGAGGTACTCAGCCAAGAAGTAGATGACTAGGTGAGGCATGCTGACCACAATGGACAGCAGCAACAGGAGGTCAAAGGCAAGGGTCAGAAA---CTTTCCTGGCAGGTAC-CAAGGACAACTAAGGGCAGGACCCAAAGGAAGACGCTGATGATCACAAAGCGGACAACGTGGTAGGTCCTGATGGGGGAACACCACTGGGGACAGCACAGGCCCCAGATGATCAGGATCAGCTTGGACATGCCCATTACAAAGCAAATAAGTACATGAAATGTCATAAAGCCT-CATGAAATTGGTCACATGCCAAGCACTTCTCCCAGTACTCACAGACCTGGCTAATTACATACAAACAAAGGGCCAGGGCCCA---------CCTCACCATGGCAGAGGTGTGCTCTGGGCGGTGGCAGCACCAGGTGGGACAGAGGACACACAGAAAGCTCTCAATACTCATGGCCACCAGGAGACAGAGACCCACTGTGTCGGAGAAATAGGAGACAGGATCCAGAAACACGGCCACCTGCAATGCCACCTGGTGATACAGCACGAGGATTTTCTCCAGCAGGATCACAGTTACACAGGAGAGGTGGACCATATAAACAGTGGCCAGGTTAACGATGTAGGTCACATAGGGGC-TACTCCAGACCTGTGAGTAGAGAAGCCAGCAGACCACATCATTGCCTACCAGCCCACAGAGGGCCACCAGCACTGTCAGGGGGGAAGAACACCTGCCTGTCCACTGACCACTCACCTTTCATTTGGCTCATGTTCACATGTCCTGAGGTCTCAGTCTCATTGTCCCAACCCGGCTTTCCAGAGAGGGTTGTGAGAAGCTGGGCTATGGTGGGCTGCCTTTGCTGCCTGGGCACATCCTGCAAAAATAAAGGCTAGTAACCTACCAGGTCTGGGGAGGAGAGTCAAGGTTGCCCTGTG
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                    29977642 999 + 172585720 TCCATCTCATTCAACAAAGCCCTTAGGAGAACAACCTTTAAGGACTCCCTATGCCTCTTCCTTTGAAGGTAGCCAGCCAAGAAGTAGATGGCTGATTGAGCCATACTGACTACCATGGACAGCAGCAACAGGAGGTCAAAGGCAAAGGTCAGGTATTCTTCTCCTGGCAGGTACACAGGGACAACTAAAGGCAGGCCCCAGATGAGGAAGCTGATGGCCACAAAGCGGGCAATGTGGTAGATCCGGATAGGTGAACACTTCTTCAGGCAGCACAGGCTCCTGATGGTCAAAGTCAGGCTGGAAATGCCCATCACAAGACAAATAAGCATGTGAAATATTATAAAGCCTGCGTGAAATTGGTCACATGCCAAGCCCTTCTCCCAGTACTCACAGACCTGGCTAACCACATGCAAAGAAAGGCCCAGGGCCCAGCTCAGGGCGCTCATCATGGCAGAGGTGCGTTTTGGGCGGTGGCAACACCAGGTGGGACAGAGGACACACAGAAGGCTCTCAATACTCATGGCCACCAGGAGACAGAGACCCACTGTGTCGGAGAAATAGGAGACAGGCTCCAGAAACACGGCCACCTGCAATGTCACCTGGTAATACAGCACGAGGATTTTCTCCAACAGGATCACAGTTACACAGGAGAGGTTGACCATATCAGCAGCGGCCAGGTTAAGGATGTATGCCATGTAGGGGT-TGCTCCTGACCTGGGAGCAGAGGAGCCAGCAGACCACACCATTGCCCACCAGCCCACATAAAGCCACCAGCACTGTCA-GGATGAAAACCACCTGTTTGCCCACCAACCACTCGCCTCCCGTATGACTCATGTTCATGTGTCCTGGGGTCTCTGTCCCGTTGTCCCAATCCGGCTTCCCAGAGAACATTGAGAGAAGCTGGGCCGTGGTGGGCTGCGTTTGCTGCCTGGGCACACTCTGCAAAGACAAAGGTTGGTAACTTACCAGGTCTAGGAAGGAGAGTCAGGGTTGCCTTCTG
i rheMac8.chr4                    T 2993 I 1637
s macNem1.NW_012011356v1           2685031 998 -   2996164 TCCATCTCATTCAACAAAGCCCTTAGGAGAACAACCTTTAAGGACTCCCTATGCCTCTTCCTTTGAAGGTAGCCAGCCAAGAAGTAGATGGCTGATTGAGCCATACTGACTACCATGGACAGCAGCAACAGGAGGTCAAAGGCAAAGGTCAGGTATTCTTCTCCTGGCAGGTACACAGGGACAACTAAAGGCAGGCCCCAGATGAGGAAGCTGATGGCCACAAAGCGGGCAATGTGGTAGATCCGGATGGGTGAACACTTCTTCAGGCAGCACAGGCTCCTGATGGTCAAAGTCAGGCTGGAAATGCCCATCACAAGACAAATAAGCATGTGAAATATTATAAAGCCTGCGTGAAATTGGTCACATGCCAAGCCCTTCTCCCAGTACTCACAGACCTGGCTAACCACATGCAAAGAAAGGCCCAGGGCCCAGCTCAGGGCGCTCATCATGGCAGAGGTGCGTTTTGGGCGGTGGCAACACCAGGTGGGACAGAGGACACACAGAAGGCTCTCAATACTCATGGCCACCAGGAGACAGAGACCCACTGTGTCGGAGAAATAGGAGACAGGCTCCAGAAACACGGCCACCTGCAATGTCACCTGGTGATACAGCACGAGGATTTTCTCCAACAGGATCACAGTTACACAGGAGAGGTTGACCATATCAGCAGCGGCCAGGTTAAGGATGTATGCCATGTAGGGGT-TGCTCCTGACCTGGGAGCAGAGGAGCCAGCAGACCACACCATTGCCCACCAGCCCACATAAAGCCACCAGCACTGTCA-GGATGAAAACCACCTGTTTGCCCACCAACCACTCGCCTCCCGTATGACTCATGTTCATGTGTCCTGGGGTCTCTGTCCCGTTGTCCCAATCCGGCTTCCCAGAGAACATTGAGAGAAGCTGGGCCGTGGTGGGCTGCGTTTGCTGCCTGGGCACACTCTGCAAAGACAAA-GTTGGTAACTTACCAGGTCTAGGAAGGAGAGTCAGGGTTGCCTTCTG
i macNem1.NW_012011356v1          T 3018 I 1663
s cerAty1.NW_012002711v1            437019 999 +    766320 TCCATCTCATTCAACAAAGCCCTTAGGAGAACAACCTTTAAGGACTCCCCATGCCTCTTCCTTTGAAGGTAGCCAGCCAAAAAGTAGATGGCTGATTGAGCCATACTGACTACCATGGACAGCAGCAACAGGAGGTCAAAGGCAAAGGTCAGGTATTCTTCTCCTGGCAGGTACACAGGGACAACTAAGGGCAGGCCCCAGATGAGGAAGCTGATGGCCACAAAGCGGACAATGTGGTAGATCCGGATGGGTGAACACTTCTTCAGGCAGCACAGGCTCCTGATGGTCAAAGTCAGGCTGGAAATGCCCATCACAAGACAAATAAGCATGTGAAATATTATAAAGCCTGCATGAAATTGGTCACATGCCAAGCCCTTCTCCCAGTACTCACAGACCTGGCTAACCACATGCAAAGAAAGGCCCAGGACCCAGCTCAGGGCACTCATCATGGCAGAGGTGTGTTTTGGGCGGTGGCAACACCAGGTGGGACAGAGGACACGCAGAAAGCTCTCAATACTCATGGCCACCAGGAGACAGAGACCCACTGTGTCGGAGAAATAGGAGACAGGCTCCAGAAACACGGCCACCTGCAATGTCACTTGGTGATACAGCACGAGGATTTTCTCCAACAGGATCACAGTTACACAGGAGAGGTTGACCATATCAGCAGCGGCCAGGTTAAGGATGTATGCCATGTAGGGGT-TGCTCCTGACCTGGGAGCAGAGGAGCCAGCAGACCACACCATTGCCCACCAGCCCACATAAAGCCACCAGCACTGTCA-GGATGAAAACCACCTGTTTGCCCACCAACCACTCGCCTCCCGTATGACTCATGTTCATGTGTCCTGGGGTCTCTGTCCCGTTGTCCCAATCCGGCTTCCCAGAGAACATTGAGAGAAGCTGGGCCGTAGTGGGCTGCCTTTGCTGCCTGGGCACACTCTGCAAAGACAAAGGTTGGTAACTTACCAGGTCTAGGAAGGAGAGTCAGGGTTGCCTTCTG
i cerAty1.NW_012002711v1          T 2991 I 1635
s chlSab2.chr17                   28895226 999 -  71996105 TCCATCTCATTCAACAAAGCCCTTAGGAGAACAACCTTTAAGGACTCCCTATGCCTCTTCCTTTGAAGGTAGCCAGCCAAGAAGTAGATGCCTGATTGAGCCATACTGACCACCATGGACAGCAGCAACAGGAGGTCAAAGGCAAAGGTCAGGTATTCTTCTCCTGGCAGGTACACAGGGACAACGAAGGGCAGGCCCCAGATGAGGAAGCTGATGGCCACAAAGCGGACAATGTGGTAGATCCGGATGGGTGAACACTTCTTCAGGCAGCACAGGCTCCTGATGGTCAAAGTCAGGCTGGAAATGCCCATCACAAGACAAATAAGCATGTGAAATATTATAAAGCCTGCGTGAAATTGGTCACATGCCAAGCCCTTCTCCCAGTAGTCACAGACCTGGCTAACCACATGCAAAGAAAGGCCCAGGGCCCAGCTCAGGGCGCTCATCATGGCAGAGGTGTGTTTTGGGCGGTGGCAACACCAGGTGGGACAGAGGACACACAGAAAGCTCTCAATACTCATGGCCACCAGGAGACAGAGACCCACTGTGTCGGAGAAATAAGAGACAGGCTCCAGAAACACGGCCACCTGCAATGTCACCTGGTGATACAGCACGAGGATTTTCTCCAACAGGATCACAGTTACACAGGAGAGGTTGACCGTATCAGCAGCGGCCAGGTTAAGGATGTATGCCAGGTAGGGGT-TGCTCCTGACCTGGGAGCAGAGGAGCCAGCAGACCACACCATTGCCCACCAGCCCACATGAAGCCACCAGTACTGTCA-GGATGAAAACCACCTGTTTGCCCACCAACCACTCGCTTCCCGTATGACTCATGTTCATGTGTCCTGGGGTCTCTGTCCCGTTGTCCCAATCCGGCTTCCCAGAGAACATTGAGAGAAGCTGGGCCATGGTGGGCTGCCTTTGTTGCCTGGGCACACTCTGCAAAGACAAAGGTTGGTAACTTACCAGGTCTAGGAAGGAGAGTCAGGGTTGCCTTCTG
i chlSab2.chr17                   T 2993 I 1635
s manLeu1.NW_012099233v1             70756 999 +    290775 TCCATCTCATTCAACAAAGCCCTTAGGAGAACAACCTTTAAGGACTCCCCATGCCTCTTCCTTTGAAGGTAGCCAGCCAAAAAGTAGATGGCTGATTGAGCCATACTGACTACCATGGACAGCAGCAACAGGAGGTCAAAGGCAAAGGTCAGGTATTCTTCTCCTGGCAGGTACACAGGGACAACTAAGGGCAGGCCCCAGATGAGGAAGCTGATGGCCACAAAGCGGACAATGTGGTAGATCCGGATGGGTGAACACTTCTTCAGGCAGCACAGGCTCCTGATGGTCAAAGTCAGGCTGGAAATGCCCATCACAAGACAAATAAGCATGTGAAATATTATAAAGCCTGCATGAAATTGGTCACATGCCAAGCCCTTCTCCCAGTACACACAGACCTGGCTAACCACATGCAAAGAAAGGCCCAGGACCCAGCTCAGGGCACTCATCATGGCAGAGGTGTGTTTTGGGCAGTGGCAACACCAGGTGGGACAGAGGACACGCAGAAAGCTCTCAATACTCATGGCCACCAGGAGACAGAGACCCACTGTGTCGGAGAAATAGGAGACAGGCTCCAGAAACACGGCCACCTGCAATGTCACTTGGTGATACAGCACGAGGATTTTCTCCAACAGGATCACAGTTACACAGGAGAGGTTGACCATATCAGCAGCGGCCAGGTTAAGGATGTATGCCATGTAGGGGT-TGCTCCTGACCTGGGAGCAGAGGAGCCAGCAGACCACACCATTGCCCACCAGCCCACATAAAGCCACCAGCACTGTCA-GGATGAAAACCACCTGTTTGCCCACCAACCACTCGCCTCCCGTATGACTCATGTTCATGTGTCCTGGGGTCTCTGTCCTGTTGTCCCAATCCGGCTTCCCAGAGAACATTGAGAGAAGCTGGGCCGTAGTGGGCTGCCTTTGCTGCCTGGGCACACTCTGCAAAGACAAAGGTTGGTAACTTACCAGGTCTAGGAAGGAGAGTCAGGGTTGCCTTCTG
i manLeu1.NW_012099233v1          T 2992 I 1636
s colAng1.NW_012115566v1           2500737 999 -   3067355 TCCATCTCATTCAACAAAGCCCTTAGGAGAACAACCTTTAAGGACTCCCCATGCCTCTTCCTTTGAAGGTAGCCAGCCAAGAAGTAGACGGCTGATTGAGCCATACTGACCACCATAGACAGCAGCAACAGGAGGTCAAAGGCAAAGGTCAGGTATTCTTCTCCTGGCAGGTACACAGGGACAACTAAGGGCAGGCCCCAGATGAGGAAGCTGATGGCCACAAAGCGGACAATGTGGTAGATCCGGATGGGTGAACACTTCTTCAGGCAGCACAGGCTCCTGATGGTCAAAGTCAGGCTGGAAATGCCCATCACAAGACAAATAAGCATGTGAAATATTATAAAGCCTGCGTGAAATTGGTCACATGCCAAGCCCTTCTCCCAGTACTCACAGACCTGGCTAACCACATGCAAAGAAAGGGCCAGGGCCCAGCTCAGGGCACTCATCATGGCAGAGGTGTGTTTTGGGCGGTGGCAACACCAGGTGGGACAGAGAACACACAGAAAGTACTCAATACTCATGGCCACCAGGAGACAGAGACCCACTGTGTCGGAGAAATAGGAGACAGGCTCCAGAAACACGGCCACCTGCAATGTCACCTGGTGATACAGCACGAGGATTTTCTCCAACAGGATCACAGTTACACAGGAGAAGTTGACCATATCAGCAGCAGCCAGGTTAAGGATGTATGCCATGTAGGGGC-TGCTCCTGACCTGGGAGCAGAGGCGCCAGCAGACCACACCATTGCCCACCAGCCCACATAAAACCACCAGCACTGTCA-GGATGAAAACCACCTGTTTGCCCACCAACCACTTGCCTCCCGTATGACTCATGTTCATGTGTCCTGGGGTCTCTGCCCCGTTGTCCCAATCCAGCTTCCCAGAGAACATTGAGAGAAGCTGGGCCATGGTGGGCTGCCTTTGCTGTCTGGGCACACTCTGCAAAGACAAAGGTTGGTAACTTACCAGGTCTAGGAAGGAGACTCAGGGTTGCCTTCTG
i colAng1.NW_012115566v1          T 3147 I 1766
s saiBol1.JH378357                   32142 995 -    242197 TCCATCTCACTCAACAAAGCTCTCTGGAAAACAACCTTTAGAGACTACCTGTGCCTCTTCCTGTGAAGGTACTCAGCCAAGAAGTGGATTACTAGGTGAGCCATGCTGACCATAATTGATAGCAGCAAAAGGATGTCAAAAGCAAGGGTCAGAAA---CATTTCTGGCAGGTACACAAGGACAACTAAGGGCAAGACCCAAAGGAAGAAGCCAATGATTACAAAGTGGACAATGAGATACATTTTAATGGGGGAACACCACTGCATACACAACAG-CTCCGGATGATCAGGATCAGGTTGGACATGCCCATTACAAAGCAAATAAGTATATGAAATGTCATAAAGCCT-CATGAAATTGGTCACATGCCAAGCTCTTCTCCCAGTATTCACAGCCCTGGCTAACTGCATGCAAAGAAAGGGCTAGGGCCCAGCTCAAGGTGCTCACTATGGCAGAGGTGTGTTTTGGGCAGGGGCAGCACCAAGTGGGACAGAGGACACATAGAAAGTTTCCAATACTCATGGCTACCAGGAGATAGAGACCAACTGTGTCAGAGAAATAGGAGACAGGCTCCAAAAACACAGCCACCTGCAATGTCACCTGAGGATACAGAATGAGGATTTTCCTCAGCAGGATTACAGTTACAAAGGAGAAGTTAACCGTATCAGCAGCAGCCAGGTTAAAGACATAGGTAATGTAGGGGCTTGCTCCGGAACTGGAATCAGAGAAGCTAGCAGATCACATCATTACCCACAAGTCCAAAGAAAGCCACCAACACTGTCA-GGAGGAAGACCTCTTGCCTGTCCACCAACCAGTCACCTCCTGTATGGCTCATGTTCACATGTCCTGAGGTCTCAGTCTCATTGTCCCAGTCCAGCTTTCCAGAGAGGGTTCTGAGAAGCTGGGCTATGGTGGGCTACCTTTGTTGCCTGGGCACATTCTGCAAAAACAAAGGCTGGTAACCTACCAGGTCTGGGGAGGAGAGTCAGGGTTACTCTCTG
i saiBol1.JH378357                C 0 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e macFas5.chrUn_KE146120             19376   1 +     27237 I

a score=1805174.000000
s hg38.chr6_GL000254v2_alt          741445 1440 +   4827813 TCCTCAGAGGTTCCTGCTGAGCCTCATGAGATTGGCAGGGATTCTGCAGAGCAGAGTGGAGGAAAGGAGCAAGCTTCTTGTGGGAGACCCATCCCTTCCCTCCCAGATTCTCCATTGCAGGATGCCCTCTCATGCATACCCTTACCCCTCTCTCCACCGCATTCAGTTATCCCTGATGCTTCATGCTGTGCCCAAGGCCCAGTGTGTATCCCGTGCACCCAGATTATCTATAAGGCTGCATAAAAAAATACATTTGTTTACATTAGCCCATAGGGATGGTTCTCCAACTTTCCCACTGGTACAGGCTGTTTTTGTGACATCGTTTTGGTGGGGGCACTGAGTGACTACTTTACCTTGAGGTTCTGAGACTCCTTGAGTCCTGGATGGGGAGGTTGCTGGTCAGTACTCAAGGGAAGGGCTCCCAaccttgctcctgctcacctcttctctgttagctctcaggcctcctccctggacctttgcacatgctgttctcctgcttggaagagcctctgtgcctcagtgagctcggtctcctccttccagtctctgcctcagggtcaccttccaggtgatcttctgctgatcagcctttaaacattgcactcttgacctgctggcagtctatgatattcacttacttgcttttgtgggaatcatgccctggaatggaagttcc-atgagaatttactttgtctttaaaattctgttcactgccttttctccagcccctggaacagggtttgacactgaggagctacttggGGAGGGTGCCTGCAGAGGACTTAAGTTGCTCTGTTACATGTAGGTGAGAGCAGGGGACCCTGCACACCAGAAGCTGCTTCATGGGGTCCCGAGGGAGACATGCACTTGAGCCATGGGCTCTGTCCACTTCAGGAGCAGGCACTCCGCTTCAGGCTGCCAATCACAGGTCTTTGTGTGAAGAATTGTGCAGGGAGGGCAAAGGTACCACtttgccttagaatttcctagtttgtattcctgaaaattccttgtcctgaatatcccgatagccctgggaaaaccaagctggttggtcaccTAACTAAAAATGAAACGGGAGAGGATCAATACCTCTTCTGGGAACCCACAGCTGAGTCAAACCTAGTAACCTGGGAGTTCAGGCCAAGGGTATGAAAGCTGATCTTATGTGGGCAAATCACAGCTATCTTTGATAAGCAGTGGATCCTTTTCTGCCTCAGTATTCCCAGCTATCTAAGGGTTGCtgttattagctgaattgtgaccttctaaattcatatgttaaggtcctaacccctaatacttcagaatgtgactgtgtctgcagacagaatctttgaagaggtaattatgttaaaatgggtctttaggttgggccctaatccaataggactggtgtcctcatgagatgaggagattaggattagttaaacacac
s panTro5.chr6                    29715544 1439 + 175400573 TCCTCAGAGGTTCCTGCTGAGCCTCATGAGATTGGCAGGGATTCTGCAGAGCAGAGTGGAGGAAAGGAGCAAGCTTCCTGTGGGAGACCCATCCCTTCCCTCCCAGATTCTCCATTGCAGGACGCCCTCTCATGCATACCCTTACCCCTCTCTCCACTGCATTCAGTTATCCCTGATGCTTCATGCTGTGCCCAAGGCCCAGTGTGTATCCCGTGCACCCAGATTATCTATAAGGCTGCATAAAAAAATACATTTGTTTACATTAGCCCATAGGGATGGTTCTCCAACTTTCCCACTGGTGCAGGCTGTTTTTGTGACATAG-TTTGGTGGGGGCACTGAGTGACTACTTTACCTTGAGGTTCTGAGACTCCTTGAGTCCTGGATGGGGAGGTTGCTGGTCAGTACTCAAGGGAAGGGCTCCCGaccttgctcctgctcacctcttctctgttagctctcaggcctcctccctggacctttgcacatgctgttctgctgcttggaagagcctctgtgcctcagtgagctcggtctcctccttccagtctctgcctcagggtcaccttccaggtgatcttctgctgatcagcctttaaacattgcactcttgacctgctggcagtctatgatattcacttacttgcttttgtgggaatcatcccctggaatggaagttcc-atgagaatttattttgtctttaaaattctgttcactgccttttctccagcccctgggacagggtttgacactgaggagctacttggGGAGGGTGCCTGCAGAGGACTTAAGTTGCTCTGTTACATGTAGGTGAGAGCAGGGGACCCTGCACACCAGAAACTGCTTCATGGGGTCCCGAGGGAGACATGCACTTGAGCCACGGGCTCTGTCCACTTCAGGAGCAGGCACTCCGCTTCAGGCTGCCAATCACAGGTCTTTGTGTGAAGAATTGTGCAGGGAGGGCAAAGGTACCACtttgccttagaatttcctagtttttattcctgaaaattcctcgtcctgaatatccccatagccctgggaaaaccaagctggttggtcaccTAACTAAAAATGAAACGGGAGAGGATCAATACCTCTTCTGGGAACCCACAGCTGAGTCAAACCTAGTAACCTGGGAGTTCAGGCCAAGGGTATGAGAGCTGATCTTATGTGGGCAAATCACAGCTATCTTTGATAAGCAGTGGATCCTTTTCTGCCTCAGTATTCCCAGCTATCTAAGGGTTGCtgttattagctgaattgtgaccttctaaactcatatgttaaggtcccaacccctaatacttcagaatgtgactgtgtctgcagacagaatctttgaagaggtaattatgttaaaatgggtctttaggttgggccctaatccaataggactggtgtcctcatgagatgaggagattaggattagttaagcacac
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29945256 1440 + 173848474 TCCTCAGAGGTTCCTGCTGAGCCTCATGAGATTGGCAGGGATTCTGCAGAGCAGAGTGGAGGAAAGGAGCAAGCTTCCTGTGGGAGACCCATCCCTTCCCTCCCAGATTCTCCATTGCAGGATGCCCTCTCATGCATACCCTTACCCCTCTCTCCACTGCATTCAGTTATCCCTGATGCTTCATGCTGTGCCCAAGGCCCAGTGTGTATCCCGTGCACCCAGATTATCTATAAGGCTGCATAAAAAAATACATTTGTTTACATTAGCCCATAGGGATGGTTCTCCAACTTTCCCACTGGTGCAGGCTGTTTTTGTGACATAGTTTTGGTGGGGGCACTGAGTGACTACTTTACCTTGAGGTTCTGAGACTCCTTGAGTCCTGGATGGGGAGGTTGCTGGTCAGTACTCAAGGGAAGGGCTCCCGaccttgctcctgctcacctcttctctgttagctctcaggcctcctccctggacctttgcacatgctgttctgctgcttggaagagcctctgtgcctcagtgagctcggtctcctccttccagtctctgcctcagggtcaccttccaggtgatcttctgctgatcagcctttaaacattgcactcttgacctgctggcagtctatgatattcacttacttgcttttgtgggaatcatcccctggaatggaagttcc-atgagaatttattttgtctttaaaattctgttcactgccttttctccagcccctggaacagggtttgacacTGAGGAGCTACTTGGGGAGGGTGCCTGCAGAGGACTTAAGTTGCTCTGTTACATGTAGGTGAGAGCAGGGGACCCTGCACACCAGAAACTGCTTCATGGGGTCCCGAGGGAGACATGCACTTGAGCCACGGGCTCTGTCCACTTCAGGAGCAGGCACTCCGCTTCAGGCTGCCAATCACAGGTCTTTGTGTGAAGAATTGTGCAGGGAGGGCAAAGGTACCACtttgccttagaatttcctagtttttattcctgaaaattcctcgtcctgaatatccccatagccctgggaaaaccaagctggttggtcaccTAACTAAAAATGAAACGGGAGAGGATCAATACCTCTTCTGGGAACCCACAGCTGAGTCAAACCTAGTAACCTGGGAGTTCAGGCCAAGGGTATGAGAGCTGATCTTATGTGGGCAAATCACAGCTATCTTTGATAAGCAGTGGATCCTTTTCTGCCTCAGTATTCCCAGCTATCTAAGGGTTGCtgttattagctgaattgtgaccttctaaactcatatgttaaggtcccaacccctaatacttcagaatgtgactgtgtctgcagacagaatctttgaagaggtaattatgttaaaatgggtctttaggttgggccctaatccaataggactggtgtcctcatgagatgaggagattaggattagttaagcacac
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5755125 1439 +   6154872 TCCTCAGAGGTTCCTGCTGAGCCTCATGAGATTGGCAGGGATTCTGCAGAGCAGAGTGGAGGAAAGGAGCAAGCTTCCTGTGGGAGACCCATCCCTTCCCTCCCAGATTCTCCATTGCAGGATGCCCTCTCATGCATACCCTTACCCCTCTCTCCACCGCATTCAGTTATCCCTGATGCTTCATGCTGTGCCCAAGGCCCAGTGTGTATCCCATGCACCCAGATTATATATAAGGCTGCATAAAAAAATACATTTGTTTACATTAGCCCATAGGGATGGTTCTCCAACTTTCCCACTGGTGCAGGCTGTTTTTGTGACATAGTTTTGGTGGGGGCACTGAGTGACTACTTTACCTTGAGGTTCTGAGACTCCTTGAGTCCTGGATGGGGAGGTTGCTGGTCAGTACTCAAGGGAAGGGCTCCCGaccttgctcctgctcacctcttctctgttagctctcaggcctcctccctggacctttgcacatgctgttctgctgcttggaagagcctctgtgcctcagtgagctcggtctcctccttccagtctctgcctcagggtcaccttccaggtgatcttctgctgatcagcctttaaacattgcactcttgacctgctggcagtctgtgatattcacttacttgcttttgtgggaatcatgccctggaatggaagttcc-atgagaatttactttgtctttaaaattctgttcactgccttttctccag-ccctggaacagggtttgacactgaggagctacttggGGAGGGTGCCTACAGAGGACTTAAGTTGCTCTGTTACATGTAGGTGAGAGCAGGGGACCCTGCACACCAGAAGCTGCTTCATGGGGTCGCGAGGGAGGCATGTACTTGAGCCATGGGCTCTGTCCACTTCAGGAGCAGGCACTCCGCTTCAGGCGGCCAATCACAGGTCTTTGTGTGAAGAATTGTGCAGGGAGGGCAAAGGTACCACtttgccttagaatttcctagtttttattcctgaaaattccttgtcctgaatatccccatagccctgggaaaaccaagctggttggtcaccTAACTAAAAATGAAACAGGAGAGGATCAATACCTCTTCTGGGAACCCACAGCTGAGTCAAACCTAGTAACCTGGGAGTTCAGGCCAAGGGTATGAGAGCCGATCTTATGTGGGCAAATCACAGCTATCTTTGATAAGCAGTGGATCCTTTTCTGCCTCAGTATTCCCAGCTATCTAAGGGTTGCtgttattagctgaattgtgaccttctaaattcatatgttaaggtcctaacccctaatacttcagaatgtgactgtgtctgcagacagaatctttgaagaggtaattatgttaaaatgggtctttaggttgggccctaatccaataggattggtgtcctcatgagatgaggagattaggattagttaagcacac
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    36376 1439 +     39990 TCCTCAGAGGTTCCTGCTGGGCCTCATGAGATTGGCAGGGATTCTGCAGAGCAGAGTGGAGGAGAGGAGAAAGCTTCCTGTGGGAGACCCATCCCTTCCCTCCCAGATCCTCCATTGCAGGATGCCCTCTCATGCATACCCTTACCCCTCCCTCCACCACATTCAGTTATCCCTGATGCTTCATGCTGTGCCCAAAGCCCAGTGTGTA-CCCGTGCACTCAGGTTATCTATAAGGCTGCATAAAAAAATACATTTGTTTACATTAGCCCATAGGGATGGTTCTCCAACTTTCCCACTGGTGCAGACTGTTTTTGTGACATGGTTTTGGTGGGGGCGCTGGGTGACTACTTTACCCTGAAGTTCTGAGACTCCTTGAGTCCTGGATGGGGAGGTTGCTGGTCAGTACTCAAGGGAAGGgctcccaaccttgctcctgctcacctcttctctataagcactcaggcctcctccctggacctttgcacatgctgttctgcggcttggaagagcctctgtgcctcagtgagctcggtctcctccttccagtctctgcctcagggtcaccttccaggtgagcttctgctgatcagcctttaaacattgcactcttgacctgctggcagtctatgatattcacttacttgcttttgtgggaatcatcccctggaatggaagttcc-atgagaatttattttgtctttaaaattctgttcactgccttttctccagcccctggaacagggtttgacacTGAGGAGCTACTTGGGGAGGGTGCCTGCAGAGGACTTAAGTCGCTCTGTTACATGTGGGTGAGAGCAGGGGACCCTGCACACCAGAAGCGGCTTCATGGGGTCCCGAGGGAGACATGCACTTGAGCCATGGGCTCTGTCCACTTCAGGAGCAGGCACTCTGCTTCAGGCTGCCAATCACAGTTCTTTGTGTGTAGAATTGCGCAGGGAGGGCAAAGGAACCACtttgccttagaatttcctactttttagccctgaaaattccttgtcctgaatatccccatagcactgggaaaaccaagctggttggtcaccTAACTAAAAATGAAATGGGAAAGGATCAATACCTCTTCTGGAAACCCACAGCTGAGTCAAACTTAGTAACCTGGGAATTCAGGCCAAGGGTATGAGAGCTGACCTTATGTGGGCAAATCACAGCTATCTTTGATAAGCAGTGGATCCTTTTCTGCCTCAGTATTCCCAGCTATCTAAGGGTTGCtgttatgagctgaattgtgaccttctaaattcatatgttaaggtcctaacccctaatacttcagaatgtgactgtatctgcagacagaatctttaaagaagtaattatgttaaaatgggtctttaggctgggccctaatccaataggactggtttcctcctgagatgaggatattaagattagttaagcacac
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s saiBol1.JH378357                   33137 1354 -    242197 TCCTCAGAGGCTCCTGCTGGGCCTCATGATATTGACAAGAATTCTACAGAGCA-----GAGGAGAGGAGCAAGCTTCCTGC-GGAGAACCATCCATTCCCTCCCAGATTTTTCGCTTCAGGACGCCCTCTAATGTGTGCCTCTATCCCTTTCTTCACCACATTCAGTTATCCCTGATGCTTCATGCTGTGTCCA------AGTGTGTA-TCTGTGCATCCAGGTTACCTATGAGGCTGAATAAAAATATACATTTGTTTACATTAGCCCATATGG-----------ACTTTCCCACTGGTGCAGACTGTTTCTGTGACATGGTTTTGGTGGGGGCACTGGCTGACTACTTTACCCTGAGGTTCTGAGATTCCTTGAGTTCTGGATGGGGAGGTTGCTGGTCAGTCCCCAAAGGAAGGGCTCctgaccttgcttctactaacctcttctctattagcaaacaaacctcctccccggacctttgcacatgctgttctgttgcctggaagagcctctgtgcatcagtgagctcagt---cttctttcagtctctgcctcaggatcaccttccaagggagcttctgctgatcagcctttaaatattgccctcttgacctgatgatagtctatgatattcatttgct--------------tcatcccctggaatggacgtcccaatgagaatttattttgtctttaagattctgttcactgccttttcttcag-ccccagaacagggtttgacaccgaggagctacttggGGAGGGCGCCTGCAGAGGACTT-AGTCACTCGGTTACATTTGGGTGAGAGCTGGGGACCCTGCATACCAGAAGCTGCTTCATGGGGTCCCGAGGGATACATGCACCTGAGCTGTGG-----------------------------GCTTCAGGCTACCAATCACAAGTCTTTATGTGTAGAATCATGCAGGGAGGGCAAAGGTACCACtttgctttagaatttcctagattttagccatgaaaattccttgtcctgaatatccccttagccctgggaaaaccaagctggttggtcacATTACTAAAAATAAAATGGGAGAGGATCAATACCTCTTCTGGAAACTGACAGCTGAGTCAAACCCAGTAGCCTGGGAGTTCAGGCCAAAGATCTGAGAGTTGAACTTATGTGGGCAAATCTCAGCTATCTGTGATAAGCAGTGGATCCTTTTCTGCCTCAGTATCCCCAGCTAT-TAAGGGT---tgttatgggctgaattatgaccttctgaactaaaatgctaaagtcctaacccccaatactttagaatgtgactgtatttggagacagaatctttaagaaggtaattatgttaaaatgggttattacgctgggccctaatccaataggactgatgtcctcatgagatgagaagatt-----------agcacac
i saiBol1.JH378357                C 0 I 41907
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e colAng1.NW_012115566v1           2501736 1766 -   3067355 I
e manLeu1.NW_012099233v1             71755 1636 +    290775 I
e chlSab2.chr17                   28896225 1635 -  71996105 I
e cerAty1.NW_012002711v1            438018 1635 +    766320 I
e macNem1.NW_012011356v1           2686029 1663 -   2996164 I
e macFas5.chrUn_KE146120             19376    1 +     27237 I
e rheMac8.chr4                    29978641 1637 + 172585720 I

a score=84033.000000
s hg38.chr6_GL000254v2_alt          742885 67 +   4827813 agggacaaccatgtaagcatgcagggaaaagacagccatctacaagccaaggagagaggtctcagaa
s panTro5.chr6                    29716983 67 + 175400573 agagacaaccaggtaagcatgcagggaaaagacagccatctacaagccaaggagagaggtctcagaa
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29946696 67 + 173848474 agagacaaccatgtaagcatgcagggaaaagacagccatctacaagccaaggagagaggtctcagaa
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5756564 67 +   6154872 agggacaaccatgtaagcatgcagggaaaagacagccatctacaaaccaaggagagaggtctcagaa
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    37815 67 +     39990 agggacaaccatgtaaccatgcagggaaaagacagccatctacaagccaaggagagaggtctcagaa
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s saiBol1.JH378357                   76398 67 -    242197 agggatgaccatgtgaggacacagggagaaggcagccatctacaagccaaggagagaggctttggaa
i saiBol1.JH378357                I 41907 T 41974
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e colAng1.NW_012115566v1           2501736 1766 -   3067355 I
e manLeu1.NW_012099233v1             71755 1636 +    290775 I
e chlSab2.chr17                   28896225 1635 -  71996105 I
e cerAty1.NW_012002711v1            438018 1635 +    766320 I
e macNem1.NW_012011356v1           2686029 1663 -   2996164 I
e macFas5.chrUn_KE146120             19376  1 +     27237 I
e rheMac8.chr4                    29978641 1637 + 172585720 I

a score=93065.000000
s hg38.chr6_GL000254v2_alt          742952 73 +   4827813 agaaccgacagtgccgaccccttaatctcagaattccaacccccaggactgtgacagaatagacttctatcat
s panTro5.chr6                    29717050 73 + 175400573 agaaccgacagtgctgaccccttaatctcagaattccaacccccaggactgtgacagaatagacttctatcat
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29946763 73 + 173848474 agaaccgacagtgctgaccccttaatctcagaattccaacccccaggactgtgacagaatagacttctatcat
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5756631 72 +   6154872 agaaccaacagtgccgaccccttaatctcagaattccaa-ccccaggactgtgacagaatagacttttatcat
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    37882 73 +     39990 agaaccgacagtgccgaccccttaatctcagacttccaacccccaggactatgacagaatagacttctatcat
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s saiBol1.JH378357                   34491 73 -    242197 agaaccaacagtgccaaccccttaatctcagacttccaacccccaggactgtgacagaatagaatcctattgt
i saiBol1.JH378357                T 41974 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e colAng1.NW_012115566v1           2501736 1766 -   3067355 I
e manLeu1.NW_012099233v1             71755 1636 +    290775 I
e chlSab2.chr17                   28896225 1635 -  71996105 I
e cerAty1.NW_012002711v1            438018 1635 +    766320 I
e macNem1.NW_012011356v1           2686029 1663 -   2996164 I
e macFas5.chrUn_KE146120             19376  1 +     27237 I
e rheMac8.chr4                    29978641 1637 + 172585720 I

a score=4777443.000000
s hg38.chr6_GL000254v2_alt          743025 977 +   4827813 ttaagtcactcagtctgtggtcttagtcatgggagtccaagcTGATGATCACAGTAGTGAAGAGAACTTTATACATGGAATCATGGGAAGTCTCAGAATGGTGAGACGAACCTGGTCCTACAACCCTGAGCTACTGAAGCTTTGTTTATGGATCACAGAGGCTTCTAAAACAAAGATTGTTCCACAA--ATTGATGAAAGCCTAAGATATGCCAGGAAATATCTCACACGTGACCCTGTGATCTGCAGTCACATATTGGTGCATCAGTGGGGTTTCAGGAGAGTGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTT----TGAATCTTCCCTCCTTGCCAGGATGATGGAGTTCCCCTTCAGTCAGCAGCTCTGTTGAAATGGAAGGGTCTGGCCCCAGTCTCGCCCCTCCCTGTGCCTGTTGCCTAGACTTTCTTATCTGAGGCCAGGAGAGGAAAGCAGATCCAGCTTATATCTAATCTGGTCATAAGACGAGGCTTGGGGCTTAGTAACATTGGTGTCCATGGAAACATCAGGCTGATGTGCGGTTCTGTGCCCAGGCCAGGGTGTCAGAACTCGTGATGGTGACAGAAGAGAAACTGCAAACAGGACTCCATGGCCCACCCCAGGCCACCAGGGCACCAAGCAGGAGCAGCTGGGCTTTGGTCTCCAACAAGGAGAGGAGATTTATAGATAAAATAGTTTCATGGGAAGAAGTGACTTCCCCTCCAGCCAGAAGAAAAGATCCGCTATGGAGGTGGCATGTGGCCTCAGGGGCAGAGTCATGCTTCCCATTCCTGAGCTCATTGAAACCCAGCTCATGCCCAGAGACGACCACTGAGCCCAGTGACTGAGCAGTACATTCTTCATTGTCACCTAGGAGGAGGAGGCAGCCCTCCTGGGGTGGAGAGGCCTCGGCATCTGGTGTGGCCCCAGCACTGGGCATAGAGACATCCTGGTACTTGGAAATGTCATTTGTGGTCT
s panTro5.chr6                    29717123 977 + 175400573 ttaagtcactcagtctgtggtcttggtcatgggagtccaagcTGATGATCACAGTAGTGAAGAGAACTTTATACATGGAATCATGGGAAGTCTCAGAATGGTGAGACGAACCTGGTCCTACAACCCTGAGCTACTGAAGCTTTGTTTATGGATCACAGAGGCTTCTAAAACAAAGATTGTTCCACAA--ATTGATGAAAGCCTAAGATATGCCAGGAAATATCTCACACGTGACCCTGTGATCTGCAGTCACATATTGGTGCATCAGTGGGGTTTCAGGAGAGTGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTT----TGAATCTTCCCTCCTTGCCAGGATGATGGAGTTCCCCTTCAGTCAGCAGCTCTGTTGAAATGGAAGGGTCTGGCCCCAGTCTCACCCCTCCCTGTGCCTGTTGCCTAGACTTTCTTATCTGAGGCCAGGAGAGGAAAGCAGATCCAGCTTATATCTAACCTGGTCATAAGACAAGGCTTGGGGCTTAGTAACATTGGTGTCCATGGAAACATCAGGCTGATGTGCGGTTCTGTGCCCAGGCCAGGGTGTCAGAACTCGTGATGGTGACAGAATAGAAACTGCAAACAGGACTCCATGGCCCACCCCAGGCCACCAGGGCACCAAGCAGGAGCAGCTGGGCTTTGGTCTCCAACAAGGAGAGAAGATTTATAGATAAAATAGTTTCATGGGAAGAAGTGACTTCCCCTCCAGCCAAAAGAAAAGATCCACTATGGAGGTGGCATGTGGCCTCAGGGGCAGAGTCATGCTTCCCATTTCTGGGCTCATTGAAACCCAGCTCATGCCCAGAGATGACCACTGAGCCCAGTGACTGAGCAGTACATTCTTCATTGTCACCTAGGAGGAGGAGGCAGCCCTCCTGGGGTGGAGAGGCCTCGGCATCTGGTGTGGCCCCAGCACTGGGCATAGAGACATCCTGGTACTTGGAAATGTCATTTGTGGTCT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29946836 977 + 173848474 ttaagtcactcagtctgtggtcttggtcatgggagtccaagcTGATGATCACAGTAGTGAAGAGAACTTTATACATGGAATCATGGGAAGTCTCAGAATGGTGAGACGAACCTGGTCCTACAACCCTGAGCTACTGAAGCTTTGTTTATGGATCACAGAGGCTTCTAAAACAAAGATTGTTCCACAA--ATTGATGAAAGCCTAAGATATGCCAGGAAATATCTCACACGTGACCCTGTGATCTGCAGTCACATATTGGTGCATCAGTGGGGTTTCAGGAGAGTGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTT----TGAATCTTCCCTCCTTGCCAGGATGATGGAGTTCCCCTTCAGTCAGCAGCTCTGTTGAAATGGAAGGGTCTGGCCCCAGTCTCACCCCTCCCTGTGCCTGTTGCCTAGACTTTCTTATCTGAGGCCAGGAGAGGAAAGCAGATCCAGCTTATATCTAATCTGGTCATAAGACAAGGCTTGGGGCTTAGTAACATTGGTGTCCATGGAAACATCAGGCTGATGTGCGGTTCTGTGCCCAGGCCAGGGTGTCAGAACTCGTGATGGTGACAGAATAGAAACTGCAAACAGGACTCCATGGCCCACCCCAGGCCACCAGGGCACCAAGCAGGAGCAGCTGGGCTTTGGTCTCCAACAAGGAGAGAAGATTTATAGATAAAATAGTTTCATGGGAAGAAGTGACTTCCCCTCCAGCCAAAAGAAAAGATCCACTATGGAGGTGGCATGTGGCCTCAGGGGCAGAGTCATGCTTCCCATTTCTGGGCTCATTGAAACCCAGTTCATGCCCAGAGATGACCACTGAGCCCAGTGACTGAGCAGTACATTCTTCATTGTCACCTAGGAGGAGGAGGCAGCCCTCCTGGGGTGGAGAGGCCTCGGCATCTGGTGTGGCCCCAGCACTGGGCATAGAGACATCCTGGTACTTGGAAATGTCATTTGTGGTCT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5756703 977 +   6154872 ttaagtcactcagtctgtggtctcggtcatgggagtccaagcTGATGATCACAGTAGTGAAGAGAACTTTATACATGGAATCATGGGAAGTCTCAGAATGGTGAGACGAACCTGGTCCTATAACCCTGAGCTACTGAAGCTTTGTTTATGGATCACAGAGGCTTCTAAAACAAAGATTGTTCCACAA--ATTGATGAAAGCCTAAGATATGCCAGGAAATATCTCACACGTGACCCTGTGATCTGCAGTCACATATTGGTGCATCAGTGGGGTTTCAGGAGAGTGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTT----TGAATCTTCCCTCCTTGCCGGGATGATGGAGTTCCCCTTCAGTCAGCAGCTCTGTTGAAATGGAAGGGTCTGGCCCCAGTCTCGCCCCTCCCTGTGCCTGTTGCCTAGACTTTGTTATCTGAGGCCAGGAGAGGAAAGCAGATCCAGCTTATATCTAATCTGGTCATAAGACGAGGCTTGGGGCTTAGTAACATTGGTGTCCATGGAAACATCAGGCTGATGTGCGGTTCTGTGCCCAGGCCAGGGTGTCAGAACTCGTGATGGTGACAGAAGAGAAACTGCAAACAGGACTCCATGGCCCACCCCAGGCCACCAGGGCACCAAGCAGGAGCAGCTGGGCTTTGGTCTCCAACAAGGAGAGGAGATTTACAGATAAAATAGTTTCATGGGAAGAAGTGACTTCCCCTCCAGCCGAAAGAAAAGATCCGCTATGGAGATGGCATGTGGCCTCAGGGGCAGAGTCATGCTTCCCATTCCTGGGCTCATTGAAACCCAGCTCATGCCCAGAGATGACCACTGAGCCCAGTGACTGAGCAGTACATTCTTCATTGTCACCTAGGAGGAGGAGGCAGCCCTCCTGGGGTGGAGAGGCCTTGGCATCTGGTGTGGCCCCAGCACTGGGCGTAGAGACATCCTGGTACTTGGAAATGTCATTTGTGGTCT
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    37955 978 +     39990 ttaagtcactcagtc--tgGTCTCGGTCATGGGGGTCCAGGCTGATGATGACAGTAGTGAAGAGAACTTTATACACGGAATCACGGGAAGTCTCAGAATGGTGAGATGTACCTGGTCCTACAACCCTGAGCTACTGAAGCTTTGTTTATGGATCACAGAGGCTTCTGAAACAAAGATTGTTCCACAA--ATTGATAAAAGCCTAAGATATACCAGGAAATATCTCACACGTGACCCTGTGATCTGCAGTCACATATTGGTGCATCAGTAGGGTTTCAGGAGAGTGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTTTGAATGAATCTTCCCTCCTTGCCGGGATGATGGAGTCCCCCTTCAGTCAGCAGCTCTGTTGAAATGGAAGGGTCTGAACCCAGTCTCACTCCTCCCTGTGCCTGTTGCCTAGACTTTCTTATCTGAGGCCAGGAGAGGAAAGCAGATCCAGCTCGTATCTAATCTGGTCATAAGACGAGGCTTGGGGCTTAGTAACATTGGTGTCCATGGAAACATCAGGCTGATGTGCGGTTCTGTGCCCAGGCCAGGGTGTCAGAACTCGTGATGATGACAGAAGAGAAACTGCAAACAGGACTCCATGGCCCACCCCAGGCCAGCAGGGCACC-ATCACGAGCAGCTGGGCTTTGGTCTCCAACAAGGAGAGGAGATTTATAGATAAAATAGTTTCATGGGAAGAAGTGACTTCCCCTCCAGCCAAAAGAAAAGATCCGCTATGGAGGTGGCATGTGGCCTCAGGGGCAGAGCCATGCTTCCCATTCCTGGGCTCATTGAAACCCAGCCCATGCCCAGAGACGCCCACTGAGCCCAGTGACTGAGCAGTACATTCTTCGTTGTCACGCAGGAGGAGGAGGCAGCCCTCCTGGGGTGGAGAGGCCTCGGCATCTGGTGTGGCCCCAGCACTGGGCACAGAGAGATCCTGGTACTTGGAAATGTCATTTGTGGTCT
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                    29980278 933 + 172585720 ttaagccactcagtctgtgatctctgtcatgggagccTGAAGTGATGATCACATTTATGACGAAAACTTTACAGATGGAATTATGGAAAGTCTCAGAGCAGTGAGATCTACCTGGTTCTACAACCCTGAGCTGCTGAAGCTTCATTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACAA--ACTGACAAATGCCTGCAATATGCCTGGAAATATCCCACAGGTGACCTTGTGGCCTGCAGTCACATACTGGTGCATCAGTAGGGTTT-AGGAGAATGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTT----TGAATCTTCCCTCCTTGCTGGGATGATGGAGT-CCCCTTCAGTCAGCAGCTTTCTTAAAATGGAAGGGTCCAGCCCTAGCCACTCCCCTCCCTGCGCTTGTTGCCTAGACTCTCTTATCTGAGGCCA-GAGAGGACCGCAGATATGGCTCAGATCTAATCTGGTCATAGGATGAGTCTTGGGGCTTGGTAACATTGGTGCCCATGGAAACATCAGGGTGACCTGCAGTTCTGTGCCTGGGTCAGGGTGTCAGAACTCGTGATGGTGACAGAAGAGAAGCTGCAAACAGACCTCTGTG----------GGCCACCAGGGCACCAAGCAGGAGCAGCTGGGCTCTAGTCTCCAACCAGGAAAGGAGATTTATAGATAAAAGAGTTTCAGGGGGAGAGGTGACTTCCCCTTCAACAAAGAGAAAATACCCACTTTGGAGGCAACATGTGGCTTCAGGGGCAGAGCCAGGCTTCCCATCCCTGGGCTCACTGTGACCCAGTTCATGCCCAGAGACCACTACTGAGGCCAGTAACTAAGCAGCACATTCTTCGTCATCACACAGGAGGAAGACACAGCCCTCCTGCAG-------------------GGTGCGGCCCCAGTGCTGGGCACAGAGAGATCCTAGCTCCTGGAAATGT------------
i rheMac8.chr4                    I 1637 C 0
s macNem1.NW_012011356v1           2687692 933 -   2996164 ttaagccactcagtctgtgatctctgtcatgggagccTGAAGTGATGATCACATTTATGATGAAGACTTTACAGATGGAATTATGGAAAGTCTCAGAGCAGTGAGATCTACCTGGTTCTACAACCCTGAGCTGCTGAAGCTTCATTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACAA--ACTGACAAATGCCTGCAATATGCCTGGAAATATCCCACAGGTGACCTTGTGGTCTGCAGTCACATACTGGTGCATCAGTAGGGTTT-AGGAGAATGCTAGAGACCAGCTCCAAGTGAGCCCAGTGTT----TGAATCTTCCCTCCTTGCTGGGATGATGGAGT-CCCCTTCAGTCAGCAGCTTTCTTAAAATGGAAGGGTCCAGCCCTAGCCACTCCCCTCCCTGCGCTTGTTGCCTAGACTCTCTTATCTGAGGCCA-GAGAGGACCGCAGATATGGCTCAGATCTAATCTGGTCATAGGATGAGTCTTGGGGCTTGGTAACATTGGTGCCCATGGAAACATCAGGGTGACCTGCAGTTCTGTGCCTGGGTCAGGGTGTCAGAACTCGTGATGGTGACAGAAGAGAAGCTGCAAACAGACCTCCGTG----------GGCCACCAGGGCACCAAGCAGGAGCAGCTGGGCTCTAGTCTCCAACCAGGAAAGGAGATTTATAGATAAAAGAGTTTCAGGGGGAGAGGTGACTTCCCCTTCAACAAAGAGAAAATAGCCACTTTGGAGGCAACATGTGGCTTCAGGGGCAGAGCCAGGCTTCCCATCCCTGGGCTCACTGTGACCCAGTTCATGCCCAGAGACCACTACTGAGGCCAGTAACTAAGCAGCACATTCTTCGTCATCACACAGGAGGAAGACACAGCCCTCCTGCGG-------------------GGTGTGGCCCCAGTGCTGGGCACAGAGAGATCCTAGCTCCTGGAAATGT------------
i macNem1.NW_012011356v1          I 1663 C 0
s cerAty1.NW_012002711v1            439653 947 +    766320 ttaagccactcagtctgtgatctctgtcatgggagccTGAACTGATGATCACATTTATGATGAAAACTTTACAGATGGAATTATGGAAAGTCTCAGAACAGTGAGATCTACCTGGTTCTACAACCCTGAGCTGCTGAAGCTTCACTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACAA--ACTGACAAATGCCTGCGATATGCCTGGAAATATCCCACAGGTGACCCTGTGGCCTGCAGTCACATATTGGTGCATCAGTAGGGTTT-AGGAGAATGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTT----TGAATCTTCCCTCCTTGCCGGGATGATGGAGT-CCCCTTCAGTCAGCAGCTTTCTTAAAATGGAAGGGTCCAGCCCTAGCCACTCCCCTCCCTGCGCTTGTTGCCTAGACTCTCTTATCTGAGGCCA-GAGAGGACCGCAGATATGGCTCAGATCTAATCTGGTCATAGGATGAGTCTTGGGGCTTGGCAACATTGGTGCCCATGGAAACATCAGGGTGACCTGCAGTTCTGTGCCTGGGTCAGGGTGTCAGAACTCGTGATGGTGACAGAAGAGAAGCTGCAAACAGACCTCCGTG----------GGCCACCAGGGCACCAAGCAGGAGCAGCTGGGCTCTAGTCTCCAACCAGGAA---AGATTTATAGATAAAAGAGTTTCAGGGGGAGAGGTGACTTCCCCTTCAACAAAGAGAAAATATCCACTTTGGAGGCAACATGTGGCTTCAGGGGCAGAGCCAGGCTTCCCATCCCTGGGCTCACTGTGACCCAGTTCATGCCCAGAGACCACTACTGAGGCCAGTAACTAAGCAGCACATTCTTCGTTATCACACAGGAGGAAGACACAGCCCTCCTGCGG--GGAAGGCTTCAGTGCCTGGTGCGGCCCCAGTACTGGGCACAGAGAGATCCTAGCTCCTGGAAATGT------------
i cerAty1.NW_012002711v1          I 1635 C 0
s chlSab2.chr17                   28897860 945 -  71996105 ttaagccactcagtctgtgatctctgtcatggaagccTGAACTGATGATCACATTTATGATGAAAACTTTACAGATGGAATTATGGAAAGTCTCAGAACAGTGAGATCTACCTGGTCCTACAACCCTGAGCTGCTGAAACTTCACTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACAATGCCTGACAAATGCCTGCGATATGCCTAGAAATATCCCACAGGTTACCTTGTGGCCTGCAGTCACATATTGGTGCATCAGTAGGGTTT-AGGAGAATGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTT----TGAATCTTCCCTCCATGCCGGGATGATGGAGT-CCCCTTCAGTCAGCAGCTTTCTTAAAATGGAAAGGTCCACCCCTAGCCACTTCCCTCCCTGCGCTTGTTGCCTAGACTCTCTTATCTGAGGCCA-GAGAGGACCGCAGATATGGCTCAGATCTAATCTGGTCATAGGATGAGTCTTGGGGCTTGGTAACAGTGGTGCCCATGGAAACATCAGGGTGACCTGCAGTTCTGTGCCTGGGTCAGGGTGTCAGAACTCGTGATGGTGACAGAAGAGAAGCTGCTG-------TCCGTG----------GGCCACCAGGGCACCAAGCAGGAGCAGCTGGGCTCTAGTCTCCAACCAGGAAAGTAGATTTATAGATAAAAGAGTTTCAGGGGGAGAGGTGACTTCCCCTTCAACAAAGAGAAAATATCCACTTTGGAGGTAACATGTGGCTTCAGGGGCAGAGCCAGGCTTCCCATCCCCGGGCTCACTGTGACCCAGTTCATGCCCAGAGACCACTACTGAGGCCAGTAACTAAGCAGCACATTCTTTGTCATCACACAGGAGGAAGACACAGCCCTCCTGGGG--GGAAGGCTTCAGTGCCTGGTGCGGCCCCAGTACTGGGCACAGAGAGATCCTAGCTCCTGGAAATGT------------
i chlSab2.chr17                   I 1635 C 0
s manLeu1.NW_012099233v1             73391 947 +    290775 ttaagccactcagtctgtgatctctgtcatgggagccTGAACTGATGATCACATTTATGATGAAAACTTTACAGATGGAATTATGGAAAGTCTCAGAACAGTGAGATCTACCTGGTTCTACAACCCTGAGCTGCTGAAGCTTCACTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACAA--ACTGACAAATGCCTGCGATATGCCTGGAAATATCCCACAGGTGACCCTGTGGCCTGCAGTCACATATTGGTGCATCAGTAGGGTTT-AGGAGAATGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTT----TGAATCTTCCCTCCTTGCCGGGATGATGGAGT-CCCCTTCAGTCAGCAGCTTTCTTAAAATGGAAGGGTCCAGCCCTAGCCACTCCCCTCCCTGCGCTTGTTGCCTAGACTCTCTTATCTGAGGCCA-GAGAGGACCGCAGATATGGCTCAGATCTAATCTGGTCATAGGATGAGTCTTGGGGCTTGGCAACATTGGTGCCCATGGAAACATCAGGGTGACCTGCAGTTCTGTGCCTGGGTCAGGGTGTCAGAACTCGTGATGGTGACAGAAGAGAAGCTGCAAACAGACCTCCGTG----------GGCCACCAGGGCACCAAGCAGGAGCAGCTGGGCTCTAGTCTCCAACCAGGAA---AGATTTATAGATAAAAGAGTTTCAGGGGGAGAGGTGACTTCCCCTTCAACAAAGAGAAAATATCCACTTTGGAGGCAACATGTGGCTTCAGGGGCAGAGCCAGGCTTCCCATCCCTGGGCTCACTGTGACCCAGTTCATGCCCAGAGACCACTACTGAGGCCAGTAACTAAGCAGCACGTTCTTCGTCATCACACAGGAGGAAGACACAGCCCTCCTGCGG--GGAAGGCTTCAGTGCCTGGTGCGGCCCCAGTACTGGGCACAGAGAGATCCTAGCTCCTGGAAATGT------------
i manLeu1.NW_012099233v1          I 1636 C 0
s colAng1.NW_012115566v1           2503502 950 -   3067355 ttaagccactcagtctatgatcgctgtcatgggagcctgaactgattatcacaTTTATGATGAAAACTTTACAGATGGAATTATGGAAAGTCTCAGAACAGTGAGATCTACCTGGTCCTACAACCCTGAGCTGCTGAAGCTTCACTTCTAAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACAA--ACTGACAAATGCCTGTGATATGCCTGGAAATATCCCACAGATGACCTTGTGGCCTGCAGTCACATATTGGTGCATCAGTAGGGTTT-AGGAGGATGCTAGGGATCAGCTCCAAGTGAGCCCAGTGTT----TGAATCTTCCCTCCTTGCCGGGATGATGGAGT-CCCCTTCAGTCAGCAGCTCTCTTGAAATGGAAGGGTCCAGCCCTAGCCCCTCCCCTCCCTGAATTTGTTGCCTAGACTCTCTTATCTGAGGCCA-GAGAGGACCACAGATATGGCTCAGATCTAATCTGGTCATAGGATGAGTCTTGGGGCTTGGTAACATTGGTGCTCATGGAAACATCAGGGTGACCTGCAGTTCTGTGCCTGGGCCAGGGTGTCAGAACTCATGATAGTGACAGAAGAGAAGCTGCAAACAGACTTCCGTG----------GGCCACCAGGGCACCAAGCAGGAGCAGCTGGGCTCTAGTCTCCAACCAGGAAAGGAGATTTATAGATAAAAGAGTTTCAGGGGGAGAGGTGACTTTCCCTTCAACAAAGAGAAAATATCCACTTTGGAGGCAACATGTGGCTGCAGGGGCAGAGCCAAGCTTCCCATCCCTGGGCTCACTGAGACCCAGTTCATGCCCAGAGACCACTACTGAGGCCAGTAACTAAGCAGCACATTCTTCATCATCACACAGGAGGAAGACACAGCCTTCCTGCGG--GGAAGGCTTCAGTGCCTGGTGCGGCCCCAGTACTGGGCACAGAGAGATCCTAGCACCTGGAAATGT------------
i colAng1.NW_012115566v1          I 1766 C 0
s saiBol1.JH378357                   34564 961 -    242197 ttaagtcattcagtctgcggtct--gtcatgggagtccaagcTG----------TAGTGAAGAGAACTTTATACATTGAATCATGGGAAGTCTCAGAATAGTGAGACATAGCTGGTCCTACAACTCTGAGCTGCTGAAACTTTGTTTATGGATCATAGAGGCTTCTGAAACAAAACTTGTTCCACAA--ATTGATAAGAGCCCA--GTATGCCTGGAAATTTCTCACAGGCAGCCCAGTGATCTGCAGTCACATATTGGTGCATCA-TGGGGTTTCAGGAGAGTGCTAGAGACAAGCTCCAAGTGAGCCCAATGTT----TAAATCTTCCCACCTTGCTGGCATGATGAAGT-ACCCTTCAGTCAGTAGCTTTGTGGAAATGGAAGGGTCCACCCCCACTCCCACCCCTCCCTGTGCCTGGTGCCTAGACTCCCTTATCTGAGGTCAGGGGAGGACCACACATATAACTCAGATCTAATCTGGTCATAAGATGAGGCTTGAGGCTTAGTAACATTGGTGCCCATGGAAACATCAGGGTGACCTGTGGTTCTGTGCCCAGGCCAGGGTGTCAGAACTCATAATGGTGACAGAAGAGAAGCTGCAAGGAGTACTCTGTGGCCCACCCCAGGCCCCCAAGGCACCAAGCAGGAACAGTTGGGCTTTAGTCATCAGAAAAGAGAGGAGATTTATAGATAAAATAGTTTCATGGGGAGAAGTGACTTTCCCTCCAGCAAAAAGAAAAGACCCACCATGGAGGTGGCATCTGGCCTCAGGGGCAGAGCCATGCTTTCCATACTTAGGCTCAATGAGACCTAGCTCATGCCCAGAGACCACTACTGAGCCCAGTGACTGAGCGACATGTTCTTCATTGTCACACGGGAAGAGGAGGCAGCCCTCCTGGGGTGGGGTGGCCTTGGAACCTGATGTGGCTCCAGCATTGGGCACAGAGAAACTCTGGTACTTGGAAATATCATTTGTGGTCT
i saiBol1.JH378357                C 0 I 343
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e macFas5.chrUn_KE146120             19376   1 +     27237 I

a score=3550567.000000
s hg38.chr6_GL000254v2_alt          744002 714 +   4827813 TGGGAATGTCATTTCCAAGTTGGGTCATGAGCCAGGCTCCCCAAGGAGTAGATACA----ACAGGCTGGATCCTGGGATTCAGGGAGCCAGCGCTGTTGGAAGTGCTCAGTTTGGTGCAGCCAAAATAGCCAAGTAGCCTTTGCATTGGGATTGAAGTATTTGCTCTGATTCTGAGGCGAGAGCCCACCCTCCCCACTTAA-TTTTTATCtgaggtgaaattcacataacag-aaattaaccaatttagagtgcacagttctgcctcactttgcctcttcacaatattgcgcaacc-cccaactctatctagttccaaaacattttcatgcc-ccataaggatgccc--------ttagcagttacatccct----ttctccctcccagctcttggcaaccaccatctgctttctgtctctgcgcattcacccattctggacacgtcctattagtggaatcaaaccttccgtgacattttgtttctgtttctttcactcagcctcatgttttcatggcttgttcatggtgcagcatgtgccagaacttcattTTCTGTGTTAGATGAGAATTAAATACGAATATAGAAGCTGGGAAATTGGAAAATCTGAAAGGTTACACCCAGAAGTCATAGACCACACCTCAGTAACACAGTGGCTCAAATCCTACTTCTAACAGAAAAACACACCCTCTGCCCATCTACACAGCCAGGGCACCTGTGAACCAGGGACCAGA
s panTro5.chr6                    29718100 714 + 175400573 TGGGAATGTCATTTCCAAGTTGGGTCATGAGCCAGGCTCCCCAAGGAGTAGATACA----ACAGGCTGGATCCTGGGATTCAGGGAGCCAGCGCTGTTGGAAGTGCTCAGTTTGGTGCAGCCAAAATAGCCAAGTAGCCTTTGCATTGAGATTGAAGTATTTGCTCTGGTTCTGAGGCGAGAGCCCGCCCTCCCCACTTAA-TTTTTATCtgaggtgaaattcacataacat-aaattaaccaatttagagtgcacagttctgcctcactttgcctcttcacaatattgtgcaacc-cccaactctatctagttccaaaacattttcaggcc-ccataaggatgccc--------ttagcagttacatccct----ttctccctcccagctcttggcaaccaccatctgctttctgtctctgcgcattcacccattctggacacgtcctattagtggaatcaaaccctccgtgacattttgtttctgtttctttcactcagcctcatgttttcatggcttgttcatggtaaagcatgtgccagaacttcattTTCTGTGTTAGATGAGAATTAAATACGAATATAGAAGCTGGGAAATCGGAAAATCTGAAAGGTTACACCCAGAAGTCATAGACCACACCTCAGTAACACAGTGGCTTAAATCCTACTTCTAACAGAAAAACACACCCTCTGCCCATCTACACAGCCAGGGCACCTGTGAACCAGGGACCAAA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29947813 714 + 173848474 TGGGAATGTCATTTCCAAGTTGGGTCATGAGCCAGGCTCCCCAAGGAGTAGATACA----ACAGGCTGGATCCTGGGATTCAGGGAGCCAGCGCTGTTGGAAGTGCTCAGTTTGGTGCAGCCAAAATAGCCAAGTAGCCTTTGCATTGGGATTGAAGTATTTGCTCTGGTTCTGAGGCGAGAGCCCACCCTCCCCACTTAA-TTTTTATCtgaggtgaaattcacataacat-aaattaaccaatttagagtgcacagttctgcctcactttgcctcttcacaatattgtgcaacc-cccaactctatctagttccaaaacattttcaggcc-ccataaggatgccc--------ttagcagttacatccct----ttctccctcccagctcttggcaaccaccatctgctttctgtctctgcgcattcacccattctggacacgtcctattagtggaatcaaaccctccgtgacattttgattctgtttctttcactcagcctcatgttttcatggcttgttcatggtaaagcatgtgccagaacttcattTTCTGTGTTAGATGAGAATTAAATACGAATATAGAAGCTGGGAAATCGGAAAATCTGAAAGGTTACACCCAGAAGTCATAGACCACACCTCAGTAACACAGTGGCTTAAATCCTACTTCTAACAGAAAAACACACCCTCTGCCCATCTACACAGCCAGGGCACCTGTGAACCAGGGACCAAA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5757680 714 +   6154872 TGGGAATGTCATTTCCAAGTTGGGTCATGAGCCAGGCTCCCCAAGGAGTAGATACA----ACAGGCTGGATCCTGGGATTCAGGGAGCCAGCGCTGTTGGAAGTGCTCAGTTTGGTGCAGCCAAAATAGCCAAGTAGCCTTTGCATTGGGATTGAAGTATTTGCTCTGGTTCTGAGGCGAGAGCCCACCCTCCCCACTTAA-TTTTTATCtgaggtgaaattcacataacat-aaattaaccaatttagagtgcacagttctgcctcactttgcctcttcacaatattgtgcaacc-accaactctatctagttccaaaacattttcatgcc-ccataaggatgccc--------ttagcagttacatccct----ttcttcctcccagctcttggcaaccaccatctgctttctgtctctgtgcattcacccattctggacacatcctattagtggaatcaaaccctccgtgacattttgtgtctgtttctttcactcagcctcatgttttcatggcttgttcatggtgcagcatgtgccagaacttcattTTCTGTGTTAGATGAGAATTAAATACGAATATAGAAGCTGGGAAATCGGAAAATCTGAAAGGTTACACCCAGAAGTCATAGACCACACCTCAGTAACACAGTGGTTCAAATCCTACTTCTAACAGAAAAACACACCCTCTGCCCATCTACACAGCCAGGGCACCTGTGAACCAGGGACCAGA
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    38933 712 +     39990 TGGGAATGGCATTTCCAAGTTGGGTCATGAGCCAGGCTCCCCAAGGAGTAGATACA----ACAGGTTGGATCCTGGGATTCAAGGAGCCAGCGCTGATGGAAGTGCTCAGTTTGGTGCAGCCAAAATAGCCAAGGAGCCTTTGCATTGGGATTGAAGTATTTGCTCTGGTTCTGAGGCAAGAGCCCACCCTCCACACTTAA-TTTTTATCtgaggtgaaattcacataacat-aaattaaccagtttagagtgcaccattctgcctcactttgccccttcacaatatcgtgcaacc-accaactctatctagttccaaaacattttcatgcc-ccataaggatgccc--------ttagcagttacttccct----ttctccctcccagctcttggcaacctccgtctgctttctgtctctgtgcattcacccattctggacatgtcctattagtggaatcaaaccctctgtgacattttgtgtctgtttctttcactcagcctcgtgttttcatggcttgttcatggtgcagcatgtgccagaacttcattTTC--TGTTAGATAAGAACTAAATACGAATATAGAAGCTGGGAAATCAGAAAATCCGAAAGGTTACACCCAGAAGTCATAGACCACACCTCAGTAACACAGTGGCTCAAATCCTACCTCTAACAGAATAACACACCCCCTGCCCATCTACACAGCCAGGGCACCTGTGAACCAGGGACCAGA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                    29981211 720 + 172585720 ---------CATTTCCAAGTTGGGTCATGAGCCAAGCTCCCCAAGGAGCATATACAACACACAGGTTGGATCCTGGGATTCAGGGAGCCAGCTCTGATGGAAGTGCTCAGGTTGGTGCAGCCAAAATAACCAAGTAACTTTTCTATTGGGATTGAAGTACTTGCTCTGGTTCTGAGGTGAAAGCCCACTCTCCCCACTGAA-TCTTTATttgaggtgaaatttgcataacac-aaattaaccaatctaaaatgcacagttctgcctcacttagcaccttcacaatgttgtgcaacc-accacctctatctagttccaaaatatttacatacctccacaagaaagctctgtatctgttagcagctactccccttgtgttcctcctcccagctcttggcaacc-ccatctaccttccatttctgcacattcacctattctggacatgtcctattagtggaaccagaccctctgtgatctttt-tgtctgtttctttcactcagcctcttgttttcacagcttattcacagggtagcatgcatcagaacttcattccttGTGTTAGACACGAACTAAATATGAATATAGAAGCCGTGAAATCAGAAGATCCAAAAGGATTTTCCTAGAAGTCCAAGACCACACCTCAGTAACACAGTGGCTCAAATCCTACCTTTAACAGAATAAAACACCCTCTGCCCATCTGCACAGCTGGGGCATTTGTGAACCAGCGGCCAGA
i rheMac8.chr4                    C 0 C 0
s macNem1.NW_012011356v1           2688625 720 -   2996164 ---------CATTTCCAAGTTGGGTCATGAGCCAAGCTCCCCAAGGAGCATATACAACACACAGGTTGGATCCTGGGATTCAGGGAGCCAGCTCTGATGGAAGTGCTCAGGTTGGTGCAGCCAAAATAACCAAGTAACTTTTCTATTGGGATTGAAGTACTTGCTCTGGTTCTGAGGTGAAAGCCCACTCTCCCCACTGAA-TCTTTATttgaggtgaaatttgcataacac-aaattaaccaatctaaaatgcacagttctgcctcacttagcaccttcacaatgttgtgcaacc-accacctctatctagttccaaaatatttacatacctccacaagaaagctctgtatctgttagcagctactccccttgtcttcctcctcccagctcttggcaacc-ccatctaccttccatttctgcacattcacctattctggacatgtcctattagtggaaccagaccctctgtgatctttt-tgtctgtttctttcactcagcctcttgttttcacagcttattcacagggtagcatgcatcagaacttcattccttGTGTTAGACACGAACTAAATATGAATATAGAAGCCGTGAAATCAGAAGATCCAAAAGGATTTTCCTAGAAGTCCAAGACCACACCTCAGTAACACAGTGGCTCAAATCCTACCTTTAACAGAATAAAATACCCTCTGCCCATCTGCACAGCTGGGGCATTTGTGAACCAGCGGCCAGA
i macNem1.NW_012011356v1          C 0 C 0
s cerAty1.NW_012002711v1            440600 720 +    766320 ---------CATTTCCAAGTTGGGTCATGAGCCAAGCTCCCCAAGGAGCATATACAACACACAGGTTGGATCCTGGGATTCAGGGAGCCAGCTCTGATGGAAGTGCTCAGGTTGGTGCAGCCAAAATAACCAAGTAACCTTTCCATTGGGATTGAAGTACTTGCTCTGGTTCTGAGGTGAGAGCCCACTCTCCCCACTGAA-TCTTTATttgaggtgaaatttacataacac-aaattaaccaatctaaagtgcacagttctgcctcacttagcaccttcacaatgttgtgcaacc-accacctctatctagttccaaaatatttacatacctccacaagaaagctctgtatctgttagcagctactccccttgtcttcctcctcccagctcttggcaacc-ccatctaccttccatttctgcacattcacctattctggacatgtcctattagtggaaccagaccctctgtgatctttt-tgtctgtttctttcactcagcctcttgttttcacagcttattcacagagtagcatgcatcagaacttcattccttGTGTTAGACACGAACTAAATATGAATATAGAAGCCGTGAAATCAGAAGATCCAACAGGATTTTCCTAGAAGTCCAAGACCACACCTCAGTAACACAGTGGCTCAAATCCTACCTTTAACAGAATAAAACACCCGCTGCCCATCTGCACAGCTGGGGCATTTGTGAACCAGCGGCCAGA
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                   28898805 721 -  71996105 ---------CATTTCCAAGTTGTGTCATGAGCCAAGCTCCCGAAGGAGCATATACAACACACAGGTTGGATCCTGGGATTCAGGGAGCCAGCTCTGATGGAAGTGCTCAGGTTGGTGCAGCCAAAATAACCAAGTAACCTTTCTATTGGGATTGAAGTACTTGCTCTGGTTCTGAGGTGAGAGCCCACTCTCCCCACTGAA-TCTTTATttgaggtgaaatttgcataacac-aaattaaccaatctaaagtgcacagttctgcctcacttagcaccttcgcaatgttgtgcaaccaaccacctctatctagttccaaaatatttacatacctccacaagaaagctctgtatctgttagcagctactccccttgtcttcctcctcccagctcttggcaatc-ccatctaccttccatttctgcacattcacctattctggacatgtcctattagtggaaccagaccctctgtgatctttt-tgtctgtttctttcactcagcctcttgttttcacagcttattcacagggtagcatgcatcagaacttcattccttGTGTTAGACACGAACTAAATATGAATATAGAAGCCGTGAAATCAGAAGATCCAAAAGGATTTTCCTAGAAGTCCAAGACCACACCTCAGTAACACAGTGGCTCAAATCCTACCTTTAACAAAATAAAACACCCTCTGCCCATCTGCACAGCTGGGGCATTTGTGAACCAGCGGCCAGA
i chlSab2.chr17                   C 0 C 0
s manLeu1.NW_012099233v1             74338 720 +    290775 ---------CATTTCCAAGTTGGGTCATGAGCCAAGCTCCCCAAGGAGCATATACAACACACAGGTTGGATCCTGGAATTCAGGGAGCCAGCTCTGATGGAAGTGCTCAGGTTGGTGCAGCCAAAATAACCAAGTAACCTTTCCATTGGGATTGAAGTACTTGCTCTGGTTCTGAGGTGAGAGCCCACTCTCCCCACTGAA-TCTTTATttgaggtgaaatttacataacac-aaattaaccaatctaaagtgcacagttctgcctcacttagcaccttcacaatgttgtgcaacc-accacctatatctagttccaaaatatttacatacccccacaagaaagctctgtatctgttagcagctactccccttgtcttcctcctcccagctcttggcaacc-ccatctaccttccatttctgcacattcacctattctggacatgtcctattagtggaaccagaccctctgtgatctttt-tgtctgtttctttcactcagcctcttgttttcacagcttattcacagggtagcatgcatcagaacttcattccttGTGTTAGACACGAACTAAATATGAATATAGAAGCCGTGAAATCAGAAGATCCAAAAGGATTTTCCTAGAAGTCCAAGACCACACCTCAGTAACACAGTGGCTCAAATCCTACCTTTAACAGAATAAAACACCCTCTGCCCATCTGCACAGCTGGGGCATTTGTGAACCAGCGGCCAGA
i manLeu1.NW_012099233v1          C 0 C 0
s colAng1.NW_012115566v1           2504452 720 -   3067355 ---------CATTTCCAAGTTGGGTCATAAGCCAAGCTCCCCAAGGAGCATATACAACACACAGGTTGGATCCTGGGATTCAGAAAGCTAGCTCTGATGGAAGTGCTCAGGTTGGTGCAGCCAGAACAACCAAGTAACCTTTCCATTGGGATTGAAGTACTTGCTCTGGTTCTGAGGTGAAAGCCCAATCTCCCTACTTAA-TCTTTATttgaggtgaaatttacataacac-aaattaaccaatctaaagtgcacagttctgcctcactcagcagcttcacaatgttgtgcaacc-accacctctatctagttccaaaatatttacatatccccacaagaaagctctgtacctgttagcagctactccccttgtcttcctcctcccagctcttggcaacc-ccatctaccttccatttctgcacattcacctattctggacatgtcctattattggaaccagaccctctgtgatctttt-tgtctgtttctttcactcagcctcttgttctcacagcttattcacagggtagcatgcatcagaacttcattccttGTGTTAGACACGAACTAAATATGAACATAGAAGCCGTGAAATCAGAAGATCCAAAAGGATTTTCCTAGAAGTCCAAGACCACACCTCAGTAACACAGTGGCTCAAATCCTACCTTTAACAGAATAAAACACCCTCTGCCCATCTGCACAGCTGGGGCATTTGTGAACCAGCGGCCAGA
i colAng1.NW_012115566v1          C 0 T 48678
s saiBol1.JH378357                   35868 692 -    242197 TGGAAATGTCATTTCTAAGTTGAATCATGAGCCAGGTTTCCCAAAGAGTAGATGCA----ACAGGTTGGATCCTGAGAATCAGGGAGCCTGCTCTGATGGAGGTGC-CAGGTCATTGCAGCCAAAATAGCCAAGTAGCCTTTGCATTGGGATTGAAGTACTTGCTCTTGT--------------------TCCCCACTTAAttttttatttgaggtgaaatttacataacataaaattagccaattgaaagtgcacggttctgccttacttagcctctttacaacattgtgcagcc-accgagtctgtctagttcc-aaacatttccatgccctagtaagaaaaccc--------ttagaagcttcttccctttccctcttccttccagcttttggcagccaccatctgttttctgtctctgtgcattcacccgttctggacatgtc-----agtagaatcagaccctctgtgacattttgtatctgtttctctcacttagcctc--gttttcatggcttgttcatgctgcagcatgtgccagaactttattccttATGTTAGATAAGAACTAAATATGAATAGAGAAGCTGTGAAATCAGAAAATCCAAAATGATATAACCAGAAGTCATAGATCACACCTCAGTAACATAGTGGCTCAAATCCTACCTCTAACAGAATAACACACCCTCTGCCTGTCTACACAGCCAAGGCATCCATGAACTAGGGACTAGA
i saiBol1.JH378357                I 343 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e macFas5.chrUn_KE146120             19376   1 +     27237 I

a score=476923.000000
s hg38.chr6_GL000254v2_alt          744716 131 +   4827813 ACACAGAAGTAGCTCACCCACTGGGGCTACCTTGGGAACCGCAGGCCCTCCTTTTTCCAGGAAACTGGTTTCTATCCTGT--CAATCTTC-----AAATGCACCTTCCTCAGTAAAAAAAAAATCACAAGGTTTTAAA
s panTro5.chr6                    29718814 130 + 175400573 ACACAGAAGTAGCTCACCCACTGGGGCTACCCTGGGAACCACAAGCCCTCCTGTTTCCAGGAAACTGGTTTCTATCCTGT--CAATCTTC-----AAATGCACCTTCCTCGGT-TAAAAAAAGTCACAAGGTTTTAAA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29948527 130 + 173848474 ACACAGAAGTAGCTCACCCACTGGGGCTACCCTGGGAACCGCAAGCCCTCCTGTTTCCAGGAAACTGGTTTCTATCCTGT--CAATCTTC-----AAATGCACCTTCCTCGGT-TAAAAAAAGTCACAAGGTTTTAAA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5758394 130 +   6154872 ACACAGAAGTAGCTCACCCACTGGGGCTACCCTGGGAACTGCAAGGCCTCCTTTTTCCAGGAAACTGGTTTCTATCCTGT--CAATCTTC-----AAATGCACCTTCCTCGGT-AAAAAAAAATCACAAGGTTTTAAA
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    39645 130 +     39990 ACACAGAAGTAGCTCACCCACTGGGGCTACCCTGGGAACCACAAGTCCTCCTTTTTCCAGGAAACTGGTTTCTATCCTGT--CAATCTTC-----AAATGCACCTTCCTCAGT-AAAAAGAAATCACAAGGTTTTAAA
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s rheMac8.chr4                    29981931 133 + 172585720 GCGCAGTTGTGGCTCACCTGCTGGGACTACCCT-GAAACCCCAAACCCTGCTTTCTCCAGGAAACTGGTTTCTGTCCTGTCCCCATTTTCCTGAGAAATGCACCTTCCCCAGT----AAAAAATCATGAGGTTTCAAA
i rheMac8.chr4                    C 0 I 12
s macNem1.NW_012011356v1           2689345 133 -   2996164 GCGCAGTTGTGGCTCACCTGCTGGGACTACCCT-GAAACCCCAAACCCTGCTTTCTCCAGGAAACTGGTTTCTGTCCTGTCCCCATTTTCCTGAGAAATGCACCTTCCCCAGT----AAAAAATCATGAGGTTTCAAA
i macNem1.NW_012011356v1          C 0 I 12
s cerAty1.NW_012002711v1            441320 133 +    766320 GCGCAGTTGTGGCTAACCTGCTGGGACTACCCT-GGAACCCCAAACCCTGCTTTCTCCAGGAAACTGGTTTCTGTCCTGTCCCCATTTTCCTGAGAAATGCACCTTCCCCAGT----AAAAAATCATGAGGTTTCAAA
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                   28899526 133 -  71996105 GCGCAGTTGTGGCTCACCTGCTGGGACTACCCT-GGAACCCCAAACCCTGCTTTCTCCAGGAAACTGGTTTCTGTCCTGTCCCCATTTTCCTGAGAAATGCACCTTCCCCAGT----AAAAAATCCTGAGGTTTCAAA
i chlSab2.chr17                   C 0 I 12
s manLeu1.NW_012099233v1             75058 132 +    290775 GTGCAGTTGTGGCTCACCTGCTGGGACTACCCT-GGAACCCCAAACCCTGCTTTCTCCAGGGAACTGGTTTCTGTCCTGTCCCCATTTTCCTGAGAAATGCACC-TCCCCAGT----AAAAAATCATGAGGTTTCAAA
i manLeu1.NW_012099233v1          C 0 C 0
s saiBol1.JH378357                   36560 128 -    242197 ACACAGAAGTACTTCACCCACTGGGGCTATCCTGGGAACCCCAAGCCCTTCTTTCTCCAGGAACCTGGTTTCTATCCTGT--CAATCTTC-----AAATGCACCATCTTTAGT---AAAAAAATCAAAAGGTTTCAAA
i saiBol1.JH378357                C 0 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e colAng1.NW_012115566v1           2505172 48678 -   3067355 T
e macFas5.chrUn_KE146120             19376   1 +     27237 I

a score=4939.000000
s hg38.chr6_GL000254v2_alt          744847 16 +   4827813 TTTTTTTAAAAAATGA---
s panTro5.chr6                    29718944 16 + 175400573 TTTTTAAAAAAAATGA---
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29948657 16 + 173848474 TTTTAGAAAAAAATGA---
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5758524 15 +   6154872 TTTT-AAAAAAAATGA---
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    39775 14 +     39990 TTTT--TAAAAAATGA---
i nomLeu3.chr1a_JH996256_1_random C 0 C 0
s cerAty1.NW_012002711v1            441453 12 +    766320 --TTCCAGGAAAAC-----
i cerAty1.NW_012002711v1          C 0 C 0
s manLeu1.NW_012099233v1             75190 12 +    290775 --TTCCAGGAAAAC-----
i manLeu1.NW_012099233v1          C 0 C 0
s saiBol1.JH378357                   36688 17 -    242197 --TTCAAAAAAAAAAATGA
i saiBol1.JH378357                C 0 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e colAng1.NW_012115566v1           2505172 48678 -   3067355 T
e chlSab2.chr17                   28899659 12 -  71996105 I
e macNem1.NW_012011356v1           2689478 12 -   2996164 I
e macFas5.chrUn_KE146120             19376  1 +     27237 I
e rheMac8.chr4                    29982064 12 + 172585720 I

a score=788892.000000
s hg38.chr6_GL000254v2_alt          744863 202 +   4827813 GTCTTTGAGTTAAAATGCTTTGAAAATG-AAAAAAAAGGT--AGAGA-CCTTTTTTCTCATACCTGGGAGGACTTGGACGGACTTGGTATCACAGAGGCCAACCTCCTGAGAGATCAAAGTTCTGCCCTCATGTCAGGAAGCTCTCTAAGCATATCTGCTTTGAACTGGGTCTTGACAAGCAGTTATCAAGTTCCCTGTGTCCCTT
s panTro5.chr6                    29718960 205 + 175400573 GTCTTTGAGTTAAAATGCTTTGAAAATGAAAAAAAAAGGTAGAGAGA-CCTTTTTTCTCATACCTGGGAGGACTTGGACAGACTTGGTATCACAGAGGCCAACCTCCTGAGAGATCAAAGTTCTGCCCTCATGTCAGGAAGCTCTCTAAGCATATCTGCTTTGAACTGGGTCTTGACAAGCAGTTATCAAGTTCCCTGTGTCCCTT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    29948673 204 + 173848474 GTCTTTGAGTTAAAATGCTTTGAAAATG-AAAAAAAAGGTAGAGAGA-CCTTTTTTCTCATACCTGGGAGGACTTGGACGGACTTGGTATCACAGAGGCCAACCTCCTGAGAGATCAAAGTTCTGCCCTCATGTCAGGAAGCTCTCTAAGCATATCTGCTTTGAACTGGGTCTTGACAAGCAGTTATCAAGTTCCCTGTGTCCCTT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015250v1           5758539 205 +   6154872 GTCTTTGAGTTAAAACGCTTTGAAAATGAAAAAAAAAGGTAGAGAGG-CCTTTTTTCTCATACCTGGGAGGACTTGGACGGACTTGGTATCACAGAGGCCAACCTCCTGAGAGATCAAAGTTCTGCCCTCATGTCAGGAAGCTCTCTAAGCATATCTGCTTTGAACTGGGTCTTGACAAGAAGTTATCAAGTTCCCTGTGTCCCTT
i gorGor5.CYUI01015250v1          C 0 C 0
s nomLeu3.chr1a_JH996256_1_random    39789 201 +     39990 GCCTTTGAGTTAAAATGCTTTGAAAATG-AAAAAAAAGGTAGAGGGA-CCTTTTTTCTCATACCT---AGGACTTGGACAGACTTGGTATCACAGAGGCCAACCTCCTGAGAGATCAAAGTTCTGCCCTCATGTCAGGAAGCTCTCTAAGCATATCTGCTTTGAACTGGATCTTCACAAGCAGTCATCAAGTTCCCTGTGTCCCTT
i nomLeu3.chr1a_JH996256_1_random C 0 N 0
s rheMac8.chr4                    29982076 196 + 172585720 GTCTCTGAGTTAAAATGGTTTGAAAATG---AAAGAAGGAAGAGAGA---TCTTTTCTCATACCTGGGAAGTCTTGGATAGAATTGGTACCACAGAGGCCAATGTCCCAAGAGATGAAAGTTCTGCCCACAGGTCAGGAGGCACT----CGATGTCTGATTTGAACTGGGTCCTGACAAGAGGTTGTCAATTTCTCTGTGTCTGTT
i rheMac8.chr4                    I 12 C 0
s macNem1.NW_012011356v1           2689490 196 -   2996164 GTCTCTGAGTTAAAATGGTTTGAAAATG---AAAGAAGGAAGAGAGA---TCTTTTCTCATACCTGGGAAGTCTTGGATAGAATTGGTACCACAGAGGCCAATGTCCCAAGAGATGAAAGTTCTGCCCACAGGTCAGGAGGCACT----CGATGTCTGATTTGAACTGGGTCCTGACAAGAGGTTGTCAATTTCTCTGTGTCTGTT
i macNem1.NW_012011356v1          I 12 C 0
s cerAty1.NW_012002711v1            441465 200 +    766320 GTCTCTGAGTTAAAATGGTTTGAAAATG---AAAGAAGGAAGAGAGA---TCTTTTCTCATACCTGGGAAGTCTTGGATAGAATTGGTACCACAGAGGCCAATGTCCCAAGAGATGAAAGTTCTGACCACAGGTCAGGAGGCACTCTAACGATGTCTCATTTGAACTGGGTCCTGACAAGAGGTTGTCAATTTCTCTGTGTCTGTT
i cerAty1.NW_012002711v1          C 0 C 0
s chlSab2.chr17                   28899671 200 -  71996105 GTCTCTGAGTTAAAATGGTTTGAAAATG---AAAGAAGGAAGAGAGA---TCTTTTCTCATACCTGGGAAGTCTTGGATAGAATTGGTACCACAGAGGCCAATGTCCCAAGAGATGAAAGTTCTGCCCACAGGTCAGGAGGCACTCTAAGGATGTCTGATTTGAACTGGGTCCTGACAAGAGGTTGTCAATTTCTCTGTGTCTGTT
i chlSab2.chr17                   I 12 C 0
s manLeu1.NW_012099233v1             75202 200 +    290775 GTCTCTGAGTTAAAATGGTTTGAAAATG---AAAGAAGGAAGAGAGA---TATTTTCTCATACCTGGGAAGTCTTGGATAGAATTGGTACCACAGAGCCCAATGTCCCAAGAGATGAAAGTTCTGCCCACAGGTCAGGAGGCACTCTAATGATGTCTGATTTGAACTGGGTCCTGACAAGAGGTTGTCAATTTCTCTGTGTCTGTT
i manLeu1.NW_012099233v1          C 0 C 0
s saiBol1.JH378357                   36705 203 -    242197 GTCTTTGAGATAAAATGCTTTGAAAATT---AAAAAAGGTAGAGAGACCCTTTTTTCTCATACCTGAGAGGACTTGAATGGACTTGAAATCACAGAGGCCAAACTCCTGAGAAATCAAAGTTCTGCCCTCATGTCAGGAAGCTCTCTAAGTATATCTGCTTTGAACTGGGTCTTGACAAGCAGTCATCAATTTCTCTGTGGCCCTT
i saiBol1.JH378357                C 0 C 0
e mm10.chr17                      57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1            562336 62472 +    730504 T
e otoGar3.GL873550                   17838 8883 +  18854210 I
e colAng1.NW_012115566v1           2505172 48678 -   3067355 T
e macFas5.chrUn_KE146120             19376   1 +     27237 I

a score=236380.000000
s hg38.chr6_GL000254v2_alt   745065 54 +   4827813 AGGTCTTCCTGTACCAGGGCCACTTGCATATCAGAGCCCAGGCCTTTAACTGAA
s panTro5.chr6             29719165 54 + 175400573 AGGTCTTCCTGTACCAGGGCCACTTGCATATCAGAGCCCAGGCCTTTAACTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29948877 54 + 173848474 AGGTCTTCCTGTACCAGGGCCACTTGCATATCAGAGCCCAGGCCTTTAACTGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5758744 54 +   6154872 AGGTCTTCCTGTACCAGGGCCACTTGCATATCAGAGCCCAGGCCTTTAACTGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74508466 54 + 122973662 GGCTCTTCCTGTACTGGGGCAAATTGCAAATCAGGGCCCAGGCCTTTATCTGAA
i nomLeu3.chr1a            N 0 C 0
s rheMac8.chr4             29982272 54 + 172585720 GGGTCTTCCTGTACTGGGGCAAATAGCATATCAGGGCCCAGGCCTTTATCTGAA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1    2689686 54 -   2996164 GGGTCTTCCTGTACTGGGGCAAATAGCATATCAGGGCCCAGGCCTTTATCTGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     441665 54 +    766320 GGGTCTTCCTGTACTGGGGCAAATAGCATATCAGGGCCCAGGCCTTTATCTGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28899871 54 -  71996105 GGGTCTTCCTGTACTGGGGCAAATAGCATATCAGGGCCCAGGCCTTTATCTGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      75402 54 +    290775 GGGTCTTCCTGTACTGGGGCAAATTGCATATCAGGGCCCAGGCCTTTATCTGAA
i manLeu1.NW_012099233v1   C 0 T 57076
s saiBol1.JH378357            36908 54 -    242197 AGGTCTTTCTGTACCAGGACCATTTGCATATCAGAGCCCAGGCCTTTAACTGAA
i saiBol1.JH378357         C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e macFas5.chrUn_KE146120      19376  1 +     27237 I

a score=13825.000000
s hg38.chr6_GL000254v2_alt   745119 4 +   4827813 GCAT
s panTro5.chr6             29719219 4 + 175400573 GCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29948931 4 + 173848474 GCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5758798 4 +   6154872 GCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74508520 4 + 122973662 ACAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29982326 4 + 172585720 ACAT
i rheMac8.chr4             C 0 T 38089
s macNem1.NW_012011356v1    2689740 4 -   2996164 ACAT
i macNem1.NW_012011356v1   C 0 T 44167
s cerAty1.NW_012002711v1     441719 4 +    766320 ACAT
i cerAty1.NW_012002711v1   C 0 T 44479
s chlSab2.chr17            28899925 4 -  71996105 ACAT
i chlSab2.chr17            C 0 T 44871
s saiBol1.JH378357            36962 4 -    242197 GCAT
i saiBol1.JH378357         C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e macFas5.chrUn_KE146120      19376 1 +     27237 I

a score=56167.000000
s hg38.chr6_GL000254v2_alt   745123 59 +   4827813 CTTTATCTCAACATCTCACGATATCCCCCAATCCTGTCTGACTCT----ATTACTCTGTCCTT
s panTro5.chr6             29719223 59 + 175400573 CTTTATCTCAACATCTCATGATATCCCCCAATCCTGTCTGACTCT----ATTACTCTGTCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29948935 59 + 173848474 CTTTATCTCAACATCTCATGATATCCCCCAATCCTGTCTGACTCT----ATTACTCTGTCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5758802 59 +   6154872 CTTTATCTCAACATCTCACGATATCCCCCAATCCTGTCTGACTCT----ATTACTCTGTCCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74508524 60 + 122973662 -TGTATCTCAGCATCTCCTGATATCCCCCATCCCATTGACACTTT--TAATTACTCCAATCTG
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            36966 63 -    242197 CATTATCTCAACATCTCATGATATCCTTTCATCCTGTCTAACTCTTTTATTTACCCTGTCCAT
i saiBol1.JH378357         C 0 I 1050
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376  1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=222500.000000
s hg38.chr6_GL000254v2_alt   745182 208 +   4827813 AAGAACTGTCCCCTGAAACAAAGAAGAATCT--TTAAGAGAAGTCA--GTCTCTCCACTTTAATGCATCTCCCAGACTGAGGTCCAGCCCAGCCCAACCCATCCTAGA-AGGCAGAAGAGGAAAGTCAGGTCAGCATTTTCCCAATGAACTCAGGAATTCCAGTAGCTCAAACGTGCTCCTTGGATTTTGTCATGAATTGAATTGCATGTTTT
s panTro5.chr6             29719282 208 + 175400573 AAGAACTGTCCCCTGAAACAAAGAAGAATCT--TTAAGAGAAGTCA--GTCTCTCCACTTTAATGCATCTCCCAGACTGAGGTCCAGCCCAGCCCAACCCATCCTAGA-AGGCAGAAGAGGAAAGTCAGGTCAGCATTTTCCCAATGAACTCAGGAATTCCAGTAGCTCAAACGTGCTCCTTGGATTTTGTCATGAATTGAATTGCATGTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29948994 208 + 173848474 AAGAACTGTCCCCTGAAACAAAGAAGAATCT--TTAAGAGAAGTCA--GTCTCTCCACTTTAATGCATCTCCCAGACTGAGGTCCAGCCCAGCCCAACCCATCCTAGA-AGGCAGAAGAGGAAAGTCAGGTCAGCATTTTCCCAATGAACTCAGGAATTCCAGTAGCTCAAACGTGCTCCTTGGATTTTGTCATGAATTGAATTGCATGTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5758861 208 +   6154872 AAGAACTGTCCCCTGAAACAAAGAAGAATCT--TTAAGAGAAGTCA--GTCTCTCCACTTTAATGCATCTCCCAGACTGAGGTCCAGCCCAGCGCAACCCATCCTAGA-AAGCAGAAGAGGAAAGTCAGGTCAGCATTTTCCCAATGAACTCAGGAATTCCAGTAGCTCAAACGTGCTCCTTGGATTTTGTCATGAATTGAATTGCATGTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74508584 211 + 122973662 AACAACAGCTTCCCTCAAAAAAGAAGGATCT--TTAAAACAAGCTGTCGCCTGCCTCCCTGTGTGAATCTGCTAAAATGACATCCAGCCCAGCCCAGCCCATCTGAGACAGGCAGGAGAGGGAACTCTGGTGGGCATTTTGTCAATAAGCTTGAGCGTGCCAGGAACTTGAATGTGCTCCTTTCATTTTGCTGTAAATTGAATTGCATTTTTT
i nomLeu3.chr1a            C 0 T 48761
s saiBol1.JH378357            38079 212 -    242197 aaAAACTGTTCCCTAAAGCAAAGAATAATTTTCTTAAGAGGAGTCAGAGTCTCTCCACTTTAACTCATCTCCCAGACTGAGGTCCAGCCCAGCCTAGCCCATCCTAAA-AGGCAGAAGAGGTAAGTCAAGTCAGCATTTTCCCAATGAGTTCAGGTATGCCAGTAGCTCAAACATGCTTCTTGGATTTTGCCATGAATTGAATTGCATGTTTT
i saiBol1.JH378357         I 1050 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=137515.000000
s hg38.chr6_GL000254v2_alt   745390 167 +   4827813 GTAAAGTAAAATTAATGTAAGAACTTTACTTTGCTGTCTTCTCAAAGATCAATTTGCTCTTTCTTGATTTTCTCTAGTGCATGTTTGTTTTTGTTGGAAAATTAGTCATGAATGATCCATAAACATAATGTAAAGAAGTCTTGGGAATGTTTTTGTGCTGTGCCACT
s panTro5.chr6             29719490 167 + 175400573 GTAAGGTAAAATTAATGTAAGAATTTTACTTTGCTGTCTTCTCAAAGATCAATTTGCTCTTTCTTGATTTTCTCTAGTGCATGTTTGTTTTTGTTGGAAAATTAGTCATGAATGATCCATAAACCTAATGTAAAGAAGTCTTGGGAATGTTTTTGTGCTGTGCCACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29949202 167 + 173848474 GTAAGGTAAAATTAATGTAAGAATTTTACTTTGCTGTCTTCTCAAAGATCAATTTGCTCTTTCTTGATTTTCTCTAGTGCATGTTTGTTTTTGTTGGAAAATTAGTCATGAATGATCCATAAACCTAATGTAAAGAAGTCTTGGGAATGTTTTTGTGCTGTGCCACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5759069 167 +   6154872 GTAAGGTAAAATTAATGTAAGAATTTTACTTTGCTGTCTTCTCAAAGATCAATTTGCTCTTTCTTGATTTTCTCTAGTGCATGTTTGTTTTTGTTGGAAAATTAGTCATGAATGATCCATAAACATAATGTAAAGAAGTCTTGGGAATGTTTTTGTGCTGTGCCACT
i gorGor5.CYUI01015250v1   C 0 C 0
s saiBol1.JH378357            38291 164 -    242197 GTAAGGTAAAATTAATGTCAGAATTTTATTTTACTGTCTTCTCAAAGATTAATTTGCTCTTTCTTGATTTTCTCTAGTGCA---TTTTTTTTTTAAGAAAGTGAGTCATGAATGATACATAAAAGTTATGTAAAGAAGTTGTGGGAGTGCTTTTGTACCTTGCCACT
i saiBol1.JH378357         C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T
e nomLeu3.chr1a            74508795 48761 + 122973662 T

a score=270756.000000
s hg38.chr6_GL000254v2_alt   745557 221 +   4827813 TACCAAGCAGGTTCTGACACAACATATTGGCAAATTCTTACTGAAAGC----CAGATCAAGCTCACACTCCATGTATCCTCATGCTATTCCCCTCCGTTCACCTACAGCTGTTTGTGAAGGAGCCAGCTGATCATTTCATATAGACTTTTGTTCACATGTGGCTCAACTTGAGAAAAATGAGATGGATGCAAGGCTCCTTTCGTTGGTTTCTCTAGCAATTCATG
s panTro5.chr6             29719657 221 + 175400573 TACCAAGCAGGTTCTGACACAACATATTGGCAAATTCTTACTGAAAGC----CAGATCAAGCTCACACTCCATGTATCCTCATGCTATTCCCCTCCGTTCACCTACAGCTGTTTGTGAAGGAGCCAGCTGATCATTTCATGTAGACTTTTGTTCACATGTGGCTCAACTTGAGAAAAATGAGATGGATGCAAGGCTCCTTTCGTCGGTTTCTCTAGCAATTCATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29949369 221 + 173848474 TACCAAGCAGGTTCTGACACAACATATTGGCAAATTCTTACTGAAAGC----CAGATCAAGCTCACACTCCATGTATCCTCATGCTATTCCCCTCCGTTCACCTACAGCTGTTTGTGAAGGAGCCAGCTGATCATTTCATGTAGACTTTTGTTCACATGTGGCTCAACTTGAGAAAAATGAGATGGATGCAAGGCTCCTTTCGTCGGTTTCTCTAGCAATTCATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5759236 221 +   6154872 TACCAAGCAGGTTCTGACACGACATATCGGCAAATTCTTACTGAAAGC----CAGATCAAGCTCACACTCCATGTATCCTCGTGCTATTCCCCTCCGTTCACCTACAGCTGTTTGTGAAGGAGCCAGCTGATCATTTCATGTAGACTTTTGTTCACATGTGGCTCAACTTGAGAAAAATGAGATGGATGCAAGGCTCCTTTCGTCAGTTTCTCTAGCAATTCATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74460034 225 + 122973662 TACCAAGCAGGTTCTGACACAACATATTGGCAAATTCTTACTGAATTTGCCACAGAGCAAGCACACACTCCATGTATCCTTGTGCTATTCCCCTCCGTTCACCTACAGCTGTTTGTGAAGAAGCCAACTGATCATTTCATGTGGACTTTTGTTCATGTGTGGCTCAACTTGAGAAAAATTGGACAGACGCAAGGCTCCTTTCATCGTTTTCTCTAGCAATTCATG
i nomLeu3.chr1a            T 48761 C 0
s saiBol1.JH378357            38455 221 -    242197 TACCAAGCAGGTTCTGCCACAACATATTGACAAATTATTACTGACAGC----CAGAGCAAGCACAGAGTCCATGCATCCTCATGTCATTCTCCTCTGTTGACCTGTGACTGTTCGTGAAGGAGCCAGCAGATCATTTCATGTAGACTTTTGTTTATGTGTAGCTCAGCTTGGGAAAACTGAGATGGATGCATGGCTCCTTTCATCATTTTCTCTAGCAACTCATG
i saiBol1.JH378357         C 0 I 9689
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=2098468.000000
s hg38.chr6_GL000254v2_alt   745778 2347 +   4827813 CATTTCTAGCTTGAAGTTGCTTCTTATCCCTGCAGGAAATAATCTTTTATTATATTCCCTCTTAAAACCTTGTGGTTAAATGTGATTCACATAGTGGGGCAGATGGTTTCTGTATGGTTCTACAGTGACCAGGAAGGAGAGATATATAAGAATGAAATACACTATGATCAAAGGGTGACAAGATGTTAAAATACACCCCTCCTTGTCCTTCGGTGCTGACTGGCTGTTTACCTCACTGCAGAGATAGAATCTGAGAAGACCTCAAGGTCACATAGGGAATGTGACTTTATGGGACAGTACTGATCCTCCCTACAAGGGAGCCATTAAGGGTCTAGAGCAGCTGTTACCTTTGGTCCTATCTCCTCTATATTTCATGTAGTTTTTATATTCAAGAGATTGTGGATCTTGAATTTTTTTATTATATGTACCCAAATTATTTTTTCATTATTAttattttttaaattatactttaagttctgggatacatgtgcagaacttgcaggtttgttacataggtatacatgtaccatggtggtttgctgcacccatcaacccatcgtctacattaggtatttctcctaatgctatccctcccctagacccccacccccaacaggccccagtgtgtgatattccctgccctgtgtccatgtgttctcatttttcaattcccacctatgagtgagaacatgccgtgtttggttttctgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcgtcctttttatggctgcatagtatttcatggtgtatatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacatacgtgtgcatgtgtcttcatagtagcatgatttataatccttcgggtatatacccagtaatgggatcactgggtcaaatggtatttctagttctagatccttaaggaatcaccaca--gtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagccttcctgtttctccacatcctcttcagcatctgttgtttcctgactttttaatgactaccattttaactggcatgagatggtatctcattgtggttttgatttgcatttctctaatgaccagtgatgataagcccttttcatatgtttgtttgccacataaatgtcttcttttaagaagtgtctgttcatatccttcacccactttttgatggggttgtttgtttttttcttgtaaatttgtttaagttctttgtagattctggatattagcccattgttagatggataaattgcaaaaattttctcccattctgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttagtttaatttaattaatttgtcaattttgtcaaattttgtcaattttaattagtgtaatttgtcaactgaactaaaatttgtcaattttaattagtttaatttgtcaattttggcttttgtttccattgctttttgtgttttagtgatgaaatctttgcccatgcctatgttctgaatgatattgcctagttctagggtttttatggttttaggtctcatgtttaaatctttaatccatcttgagttaatttttgtataagctgtataaaaggggtccagtttctgttttctgcatatggctaaccattttcgccaacactatttattaaatagggaatcctttccccattgcttttttctgtcaggtttttcaaagatcagatgcttgtagatgtgtggtgctatttctgaggtctctgttctgtttcattggtctatatatctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatattttgaagtcaggtatcgtgatgcctccagctttgttccttttgcttagaattgtcttggctacacaggctctttcttggctccatatgaaatttaaagtagtttttgctaattctgtgaagagagtcaatggtagcttgatggggatagcattaaatctatcaattactttgggcagtatggcttttttcacgatattgattcttcctatccacaagcatggaatgttttcccatttgtttgtgtcctcttttgtttccttgagaagcagtttgttgttctccttgaagaggtccttcacatcccttgtATGtttttttttaagaaacagaatctcactttgttgcccagactggcatggagtgaaatgatctcgactcactgtctcaaattcttggtttcaagagcatc
s panTro5.chr6             29719878 2345 + 175400573 CATTTCTAGCTTGAAGTTCCTTCTTATCCCTGCAGGAAATAATCTTTTATTATATTCCCTCTTAAAACCTTGTGCTTAAATGTGATTCACATAGTGGGGCAGATGGTTTCTGTATGGTTCTATAGTGACTAGGAGGGAGAGATATATAAGAATGAAATACACTATGATCAAAGGGTGACAAGATGTTAAAATACACCCCTCCTTGTCCTTCGGTGCTGACCGGCTCTTTACCTCACTGCAGAGATAGAATCTGAGAAGACCTCAAGGTCACATAGGGAATGTAACTTTATGGGACAGTACTGATCCTCCCTACAAGGGAGCCATTAAGGGTCTAGAGCAGCTGTTACCTTTGGTCCTATCTCCTCTATATTTCATGTAGTTTTTATACTCAAGAGATTGTGGATCTTGAATTTTTTTATTATATGTACCCAAATTATTTTTTCATTATTAttatttttt-aattatactttaagttctgggatacatgtgcagaacttgcaggtttgttacataggtatacatgtaccgtggtggtttgctgcacccatcgacccatcgtctacattaggtatttctcctaatgctatccctcccctagacccccacccccaacaggccccagtgtgtgatattccctgccctgtgtccatgtgttctcatttttcaattcccacctatgagtgagaacatgccgtgtttggttttctgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcgtcctttttatggctgcatagtatttcatggtgtatatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacatacgtgtgcatgtgtctttatagtagcatgatttataatcctttgggtatatacccagtaatgggatcactgggtcaaatggtatttctagttctagatccttaaggaatcaccaca--gtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagccttcctgtttctccacatcctcttcagcatctgttgtttcctgactttttaatgactaccattttaactggcatgagacggtatctcattgtggttttgatttgcatttctctaatgaccagtgatgataagcccttttcatatgtttgtttgccacataaatgtcttcttttaagaagtgtctgttcatatccttcacccactttttgatggggttgtttgtttttttcttgtaaatttgtttaagttctttgtagattctggatattagcccattgttagatggataaattgcaaaaattttctcccattctgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttagtttaatttaattaatttgtcaattttgtcaaattttgtcaattttaattagtgtaatttgtcaactgaactaaaatttgtcgattttaattagcttaatttgtcaattttggcttttgtttccattgctttttgtgttttagtggtgaaatctttgcccacgcctatgttctgaatgatattgcctagttctagggtttttatggttttaggtcttatgtttaaatccgtaatccatcttgagttaatttttgtataagctgtataacaggggtccagtttctgttttctgcatatggctaaccattttcaccaacactatttattaaatagggaatcctttccccattgcttttttctgtcaggtttttcaaagatcagatgcttgtagatgtgtggtgctatttctgaggtctctgttctgtttcattggtctatgtatctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatattttgaagtcaggtatcgtgatgcctccagctttgttctttttgcttagaattgtcttggctacacgggctctttcttggctccatatgaaatttaaagtagtttttgctaattctgtgaagagagtcaatggtagcttgatggggatagcattaaatctatcaattactttgggcagtatggcttttttcacaatattgattcttcctatccacaagcatggaatgttttcccatttgtttgtgtcctcttttgtttccttgataagcagtttgttgttctccttgaagaggtccttcacatcccttgtATA-ttttttttaagaaacagaatctcactttgttgcccagactggcatggagtgaaatgatctcgactcactgtctcaaattcttgggctcaagagcatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29949590 2345 + 173848474 CATTTCTAGCTTGAAGTTGCTTCTTATCCCTGCAGGAAATAATCTTTTATTATATTCCCTCTTAAAACCTTGTGCTTAAATGTGATTCACATAGTGGGGCAGATGGTTTCTGTATGGTTCTATAGTGACTAGGAGGGAGAGATATATAAGAATGAAATACACTATGATCAAAGGGTGACAAGATGTTAAAATACACCCCTCCTTGTCCTTCGGTGCTGACCGGCTCTTTACCTCACTGCAGAGATAGAATCTGAGAAGACCTCAAGGTCACATAGGGAATGTAACTTTATAGGACAGTACTGATCCTCCCTACAAGGGAGCCATTAAGGGTCTAGAGCAGCTGTTACCTTTGGTCCTATCTCCTCTATATTTCATGTAGTTTTTATACTCAAGAGATTGTGGATCTTGAATTTTTTTATTATATGTACCCAAATTATTTTTTCATTATTAttatttttttaattatactttaagttctgggatacatgtgcagaacttgcaggtttgttacataggtatacatgtaccgtggtggtttgctgcacccatcgacccatcgtctacattaggtatttctcctaatgctatccctcccctagacccccacccccaacaggccccagtgtgtgatattccctgccctgtgtccatgtgttctcatttttcaattcccacctatgagtgagaacatgccgtgtttggttttctgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcgtcctttttatggctgcatagtatttcatggtgtatatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacatacgtgtgcatgtgtctttatagtagcatgatttataatcctttgggtatatacccagtaatgggatcactgggtcaaatggtatttctagttctagatccttaaggaatcaccaca--gtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagccttcctgtttctccacatcctcttcagcatctgttgtttcctgactttttaatgactaccattttaactggcatgagacggtatctcattgtggttttgatttgcatttctctaatgaccagtgatgataagcccttttcatatgtttgtttgctacataaatgtcttcttttaagaagtgtctgttcatatccttcacccactttttgatggggttgtttg-ttttttcttgtaaatttgtttaagttctttgtagattctggatattagcccattgttagatggataaattgcaaaaattttctcccattctgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttagtttaatttaattaatttgtcaattttgtcaaattttgtcaattttaattagtgtaatttgtcaactgaactaaaatttgtcgattttaattagcttaatttgtcaattttggcttttgtttccattgctttttgtgttttagtggtgaaatctttgcccacgcctatgttctgaatgatattgcctagttctagggtttttatggttttaggtcttatgtttaaatctgtaatccatcttgagttaatttttgtataagctgtataacaggggtccagtttctgttttctgcatatggctaaccattttcaccaacactatttattaaatagggaatcctttccccattgcttttttctgtcaggtttttcaaagatcagatgcttgtagatgtgtggtgctatttctgaggtctctgttctgtttcatcggtctatgtatctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatattttgaagtcaggtatcgtgatgcctccagctttgttctttttgcttagaattgtcttggctacacgggctctttcttggctccatatgaaatttaaagtagtttttgctaattctgtgaagagagtcaatggtagcttgatggggatagcattaaatctatcaattactttgggcagtatggcttttttcacaatattgattcttcctatccacaagcatggaatgttttcccatttgtttgtgtcctcttttgtttccttgataagcagtttgttgttctccttgaagaggtccttcacatcccttgtATA-ttttttttaagaaacagaatctcactttgttgcccagactggcatggagtgaaatgatctcgactcactgtctcaaattcttgggctcaagagcatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5759457 2336 +   6154872 CATTTCTAGCTTGAAGTTGCTTCTTATCCCTGCAGGAAATAATCTTTTATTATATTCCCTCTTAAAACCTTGTGGTTAAATGTGATTCACATAGTGGGGCAGATGGTTTCTGTATGGTTCTATAGTGACTAGGAGGGAGAGATATATAAGAATGAAATACACTATGATCAAAGGGTGACAAGATGTTAAAATACACCCCTCCTTGTCCTTCGGTGCTGACCGGCTCTTTACCTCACTGCAGAGATAGAATCTGAGAAGACCTCAAGGTCACAGAGGGAATGTGACTTTATGTGACAGTACTGATCCTCCCTACAAGGGAGCCATTAAGGGTCTAGAGCAGCTGTTACCTTTGGTCCTATCTCCTCTATATTTCATGTAGTTTTTATACGCAAGAGATTGTGGATCTTGAATTTTTTTATTATATGTACCCAAATTATTTTTTCATTATTAttatttttttaattatactttaagttctgggatacatgtgcagaacttgcaggtttgttacatgggtatacatgtaccatggtggtttgctgcacccatcaacccatcgtctacattaggtatttctcctaatgctatccctcccctagccccccacccccaacaggccccagtgtgtgatattccctgccctgtgtccatgtgttctcatttttcaactcccac--------gagaacatgccgtgtttggttttctgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcgtcctttttatggctgcatagtatttcatggtgtatatgtgccacattttcttaatccagtctatcactgatggacatttgggttggttccaagtctttgctattgtgaatagtgctgcaataaacatacatgtacatgtgtctttatagtagcatgatttataatcctttgggtatacacccagtaatgggatcactgggtcaaatggtatttctagttctagatccttaaggaatcaccaca--gtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagccttcctgtttctccacatcctcttcagcatctgttgtttcctgactttttaatgactaccattttaactggcatgagatggtatctcattgtggttttgatttgcatttctctaatgaccagtgatgataagcccttttgatatgtttgtttgccacataaatgtcttcttttaagaagtgtctgttcatatccttcacccactttttggtggggttgtttgtttttttcttgtaaatttgtttaagttctttgtagattctggatattagcccattgttagatggataaattgcaaaaattttctcccattctgtaggttgccttttcactctgatgatagtttcttttgctgtgcagaagctctttagtttaatttaattaatttgtcaattttgtcaaattttgtcaattttaattagtgtaatttgtcaactgaactaaaatttgtcaattttaattagtttaatttgtcaattttggcttttgtttccattgc-ttttgtgttttagtgatgaaatctttgcccatgcctatgttctgaatgatattgcctagttctagggtttttatggttttaggtcttatgtttaaatctgtaatccatcttgagttaatttttgtataagctgtataacagcggtccagtttctgttttctgcatatggctaaccattttcgccaacactatttattaaatagggaatcctttccccattgcttttttctgtcaggtttttcaaagatcagatgcttgtagatgtgtggtgctatttctgaggtctctgttctgtttcattggtctatatatctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatattttgaagtcaggtatcgtgatgcctccagctttgttctttttgcttagaattgtcttggctacacgggctctttcttggctccatatgaaatttaaagtagtttttgctaattctgtgaagagagtcaatggtagcttgatggggatagcattaaatctataaattactttgggcagtatggcttttttcacgatattgattcttcctatccacaagcatggaatgttttcccatttgtttgtgtcctcttttgtttccttgagaagcagtttgttgttctccttgaagaggtccttcacatcccttgtATG--tttttttaagaaacagaatctcactttgttgcccagactggcatggagtgaaatgatctcgactcactgtctcaaattcttgggctcaagagcatc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74460259 2338 + 122973662 CATTTCTAGCTTGAAGTTGCTTCTTATCCCTGCAGGAAATAATCTTTTATTATATTCCCTCTTAAAACCTTGTGGTTAAATGTGATTCACACAGTGGGGCAGATGGTTTCTGTATGGTTCTATAGTGAGTAGGAGAGAGAGATAAATAAGAATGAAATACACTATGATCAAAGGGTGACAAGATGTTAAAATATACCCCTCCTTGTCCTTCGGTGCTGACTGGCTCTTTACCTCACTGCAGAGATAGAATCTGAGAAGACCTCAAGGTCACATAGGGAATGTGACTTTATGGGACAATACCGATCCTCCCTACAAGGGAGCCATTAAGGGTCTAGAGCAGCTGTTACCTTTGGTCCTATTTCCTCTATATTTCATGTAGTTTTTATATTCAGGAGATTGTGGATCTTGAA-TTTTTTATTATATGTACCCAAATTATTTTTTCAttat-----ttttttaaattatacattaagttctgggatacatgtgcagaacgtgcaggtttgttacataggtatacatgtgccatggtggtttgctgcacccatcaacccatcgtctccattaggtatttcccctaatgctatccctcccctagacccccacccccaacaggccccagtgtgtgatgttccctgccctgtgtccaagtgttctcattgttcaattcccacctatgagtgaggacatgccatgtttggttttctgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcgtcctttttatggctgcatagtatttcatggtgtatatgtgccacattttcttaatccagtctatcactgatggacatttgggttggttccaagtctttgctattgtgaatagtgccgcaataaacatacgtgtgcatgtgtctttctagtagcatgatttataatcctttgggtatacacccagtaatgggatcactgggtcaaatggtatttctagttctagatccttaaggaatcaccacactgtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagccttcctgtttctccacatcctcttcagcgtctgtcatttcctgactttttaatgactaacattttaactggcatcagatggtatctaattgtggttttgatttgcatttctctaatgaccagtgatgatgagcctttttcatatgtttgtttgccacataaatgtcttcttttaagaagtgtctgttcatatccttcacccatttttcgatgggattgtttgtttttttcttgtaaatttgtttaagttctttgtagattctggatattagcccattgttagatggataaattgcaaaaattttctcccattctgtaggttgcatgttcactctgatg-tagtttcttttgctgtgcagaagctctttagtttaatttaattaatttgtcaattttgtcaaattttgtcaattttaattagtgtaatttgtcaactaaactaaaatttgtcaattttcattagtttagtttgtcaattttggcttttgttgctgttgctttttgtgttttagtcacgaaatctttgcccatgcctatgttctgaacgatattacctagttctagtgtttttatggttttaggtcttacgtttaagcctttaatccatcttgagttaatttttgtataagctttataaaaggggtccagtttccgttttctgcatatggctagccatttttgccaacaccatttattacatagggaatcctttccccattgcttgtttttgtcaggtttgtcaaagatcagatgattgtagatgtgtggcactatttctgaggtctctgttctgttttatcggtctatatatctgttttggtaccagtatcatgctgttttggttactgtagccttacagtatagttt--agtcaggtagcgtgatgcctccagctttgttctttttgcttaggattgtcttagctacacgggctctttcttggctctgtatgaaatttaaagtagttttttctaattctgtgaagaaagtcaatggtagcttgatggggatagcattaaatctaaaaattacttggggcagtatggcttttttcacaatattgattcttcctatccacgagcatggaatactttcccatttgtttgtgtcttcttttgtttccttgagaagcagttcgttgttctccttgaagaggtccttcacatcccttgtATG--ttcttttaagaaacagaatctcactttgttgcccagactggcatggagtgaaatgatctcagctcactgtctcaaattcttgggctcaagagcatc
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            38676 9689 -    242197 I
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376    1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=734766.000000
s hg38.chr6_GL000254v2_alt   748125 418 +   4827813 ctcTGTTCCCACTCTCTCATGATACCTAATACTGGTGATTATCAGGCTCAAGTCCTGCCTATAGTCATGTATCTGAAACACAATTGGGATTCTATCCAGGGACTCTTGTCCACAGGACACCCCTAATAAGATTGGCCTCCCCCATATAGTGTATCTCTTATGCTTTTCTACCTTTGAGAACCAGCACTATTTGCTTCTATCACAGTAAAAGCCACACTCAGATAATTTTATAAACATAAATCTAGGCCCTGGTTTAACAACAATGGGCATCAATGTATGAGGCAAGCTTATCTAGTACTAGGATTCCAGTTTGCTGTGTAGCATTCCCATAGAAGGCTGTCTTTGCC-TTTTCATTCAAGGATAAGAAAATATTTCCAGTTAGAAATGTTTTTGGCTGCCAAAT--AGAGAAGCTCAATTA
s panTro5.chr6             29722223 418 + 175400573 ctcTGTTCCCACTCTCTCATGATACATAATACTGGTGATTATCAGGCTCAAGTCCTGCCTATAGTCATGTATCTGAAACACAATTGGGATTCTATCCAGGGACTCTTGTCCACAGGACACCCCTAATAATATTGGCCTCCCCCATATAGTGTATCTCTTATGCTTTTCTACCTTTGAGAACCAGCACTATTTGCTTCTATCACAGTAAAAGCCACACTCAGATAATTTTATAAACATAAATCTAGGCCCTGGTTTAACAACAATGGGCATCAATGTATGAGGCAAGCTTATCTAGTACTAGGATTCCAGTTTGCTGTGTAGCATTCCCATAGAAGGCTGTCTTTGCC-TTTTCATTCAAGGATAAGAAAATATTTCCAGTTAGAAATGTTTTTGGCTGCCAAAT--AGAGAAGCTCAATTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29951935 418 + 173848474 ctcTGTTCCCACTCTCTCATGATACATAATACTGGTGATTATCAGGCTCAAGTCCTGCCTATAGTCATGTATCTGAAACACAATTGGGATTCTATCCAGGGACTCTTGTCCACAGGACACCCCTAATAATATTGGCCTCCCCCATATAGTGTATCTCTTATGCTTTTCTACCTTTGAGAACCAGCACTATTTGCTTCTATCACAGTAAAAGCCACACTCAGATAATTTTATAAACATAAATCTAGGCCCTGGTTTAACAACAATGGGCATCAATGTATGAGGCAAGCTTATCTAGTACTAGGATTCCAGTTTGCTGTGTAGCATTCCCATAGAAGGCTGTCTTTGCC-TTTTCATTCAAGGATAAGAAAATATTTCCAGTTAGAAATGTTTTTGGCTGCCAAAT--AGAGAAGCTCAATTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5761793 418 +   6154872 ctcTGTTCCCACTCTCTCATGATACATAATACTGGTGATTATCAGGCTCAAGTCCTGCCTATAGTCATGTATCTGAAACACAATTGGGATTCTATCCAGGGACTCTTGTCCACAGGACACCCCTAATAATATTGGCCTCCCCCATATAGTGTATCTCTTATGCTTTTCTACCTTTGAGAACCAGCACTATTTGCTTCTATCACAGTAAAAGCCACACTCAGATAATTTTATAAACATAAATCTAGGCCCTGGTTTAACAACAATGGGCATCAATGTATGAGGCAAGCTTATCTAGTACTAGGATTCCAGTTTGCTGTGTAGCATTCCCATAGAAGGCTGTCTTTGCC-TTTTCATTCAAGGATAAGAAAATATTTCCAGTTAGAAATGTTTTTGGCTGCCAAAT--AGAGAAGCTCAATTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74462597 417 + 122973662 ctctgttcccagtctctcATGATACATAATGCTAGTGATTATCAGGCTCAAGTCCTGCCTATAGTCATGTATCTGAAACACCCTTGGGATTCTATCTAGGGACTCTTGCCCACAGGACACTCATAATAAGATTGGCCT-CCCCATATAGTGTATCTCTTATGCTTTTCTACCTTTGAGAACCAGTACTATTTGCTTCTATCACAGTAAAAGCCACACTC--ATAATTTTATAAACATAAATCTAGGCCCTGGTTTAACAACAATGGGCATCGATGTGTGAGGCAAGCTTATCTAGTACTAGGATTCAAGTTTACTGTGTAGCATTCCCATAGAAGGCTGTCTTTGCC-TTTTCATTCAAGGATAAGAAAATATTTCcagttagaaatgtttttggcttccaaataaagagaagctcaatta
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            48365 419 -    242197 CTCTCTTCCCACTCTCTCATAATACATAATACTGGTGATTATCAGGCTCAAATCCTGCCTGTAATCATGTATCTGAAACACCCTTGGGATTCTATCTAGGGATGTTTCTTCACAGGACACTCATAATAAGATTGGCCTCAACCATATAGTGTATCTCTTATGCTTTTCTATCTTTGGGAACCAGCACTATTCACTTCCATCACAGTAAAAGCCACA--CAGATAATTTTATAAACATAAATCTAGGCCCTGGTTTGATGACAATTGGCATTCATGTGTGAAGCAAGCTTATCTAGTACTAGGATTCGAGTTTGCTGTGTAGCATTCCCACAGAAGGCTCTCTTTGTCTTTTTCATTCAAGGATAAGAAAATATTTCcagttagaaatagttttggctgcaaaataaagagaagctcaactc
i saiBol1.JH378357         I 9689 C 0
s aotNan1.NW_018509740v1      91015 418 -    457564 CTCTGTTCCCACTCTCTCATGATATATAATCCTGGTGATTATCAGGCTCAAGTCCTGCCTATAATCGTGTATCTGAAACACCCTTGGGATTCTACCTAGGGATGTTTCTTCACAGGACACTCATAATAAGATTGGCCTCCCCCATATAGTGTATCTCTTAAGCTTTTCTATCTTTGGGAACCAGCACTATTCACTTCTATCACAGTAAAAGCCACA--CAGATAATTTTATAAACAGAAATCTAGGCCCTGGTTTAATGACAATGGGCATTGATGTGTGAGGCAAGCTTACCTAGCACTAGGATTCAAGTTTGCTGTGTAGCATTCCCATAGAAGGCTGTCTTTGTC-TTTTCATTCAAGGATAAGAAAATATTTCcagttagaaatgtttttggctgcaaaataaagagaagctcaactc
i aotNan1.NW_018509740v1   N 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=766307.000000
s hg38.chr6_GL000254v2_alt   748543 327 +   4827813 AACTAATTTTAGCAGTCAGTGATGTATAATATTGAAGCACAAGACACCTGTAGATAGGGCTGCTGCAAGATGTTCAAGTCAGTGGCACAATGTCTTGAAAAAATTAGAATTATCCACTTTTACTTCTGGCATCTTCAGAATATTGTCCTCATTCCTCACTGGGCATGTTTTCCGAATGCTTAGGATATGACTTCATACTCAGAATATGATATAAAAAATGCGAGAAAAAAGAA----CTTCCTTTCCTTCCATCTCTTTTTATATCTGTGAAAACTCTTCTTAGAGTCATACCACATAGAATGTCCTGCGATATCTCATTGGAATGCCCTC
s panTro5.chr6             29722641 327 + 175400573 AACTAATTTTAGCAGTCAGTGATGTATAATATTGAAGCACAAGACACCTGTAGATAGGGCTGCTGCAAGATGTTCAAGTCAGTGGCACAATGTCTTGAAAAAATTAGAATTATCCACTTTTACTTCTGGCATCTTCAGAATATTGTCCTCATTCCTCACTGGGCATGTTTTCCAAATGCTTAGGATATGACTTCATACTCAGAATATGATATAAAAAATGCAAGAAAAAAGAA----CTTCCTTTCCTTCCATCTCTTTTTATATCTGTGAAAACTCTTCTTAGAGTCATACCACATAGAATGTCCTGCTATATCTCATTGGAATGCCCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29952353 327 + 173848474 AACTAATTTTAGCAGTCAGTGATGTATAATATTGAAGCACAAGACACCTGTAGATAGGGCTGCTGCAAGATGTTCAAATCAGTGGCACAATGTCTTGAAAAAATTAGAATTATCCACTTTTACTTCTGGCATCTTCAGAATATTGTCCTCATTCCTCACTGGGCATGTTTTCCAAATGCTTAGGATATGACTTCATACTCAGAATATGATATAAAAAATGCAAGAAAAAAGAA----CTTCCTTTCCTTCCATCTCTTTTTATATCTGTGAAAACTCTTCTTAGAGTCATACCACATAGAATGTCCTGCTATATCTCATTGGAATGCCCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5762211 327 +   6154872 AACTAATTTTAGCAGTCAGTGATGTATAATATTGAAGCACAAGACACCTGTAGATAGGGCTGCTGCAAGATGTTCAAGTCAGTGGCACAATGTCTTGAAAAAATTAGAATTATCCACTTTTACTTCTGGCATCTTCAGAATATTGTCCTCATTCCTCACTAGGCATGTTTTCCAAATGCTTAGGATATGACTTCATACTCAGAATATGATATAAAAAATGCAAGAAAAAAGAA----CTTCCTTTCCTTCCATCTCTTTTTATATCTGTGAAAACTCTTCTTAGAGTCATGCCACATAGAATGTCCTGCTATATCTCATTGGAATGCCCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74463014 327 + 122973662 aactaattttagcactcagtgatgtataatattgaagcacaagaaacctgtagataaggctgctgcgagatgttcaagtcagtggcacaacgtcttgcaaaaattagaattatccactttcacctctggcatcttcagaatattgtcctcattcctcactgggcatgttttccaaatgcttaggatatgacttcatactcagaatatgatctaaaaaatgcaagaaaaaagaa----cttcctttccttccatctcttttcatatctgtaaaaactcttcttagaatcataccacatagaatgtcctgctatatctcattggAATCCCCTC
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            48784 325 -    242197 aactaatttgaacagtcagtgatctgtgatactgaagtacaagaaacctacagatagggctgctgcaagatattcaagtcagtgacacaatgtcttgaaaaaattagaattatccactttcacctctgacatcttcagaatattgtcctcattcctcattgggcatgctttccaaacacttaggatatgacttcatactcagaatatgatat--gaaatacaagaaaaaagaa----cttcctttccttctatctctttttatatctgcaaaaactcttctcagagtcataccatgtagaatgtcctgctacgtctcattagAGTGCCCTC
i saiBol1.JH378357         C 0 I 23
s cebCap1.NW_016108310v1      63187 325 +    106389 aACTAATTTGAACAGTCAGTGATGTATGATATTGAAGTCcaagaaacctatagatagggctgctgcaagatattcaagtcagtgacacaatgtcttgaaaaaagtagaattatccactttcacctctggcatcttcagaatattgtcctcattcctcattgagcatgctttccaaatgattaggatatgacttcatactcagaatatgatat--gaaacataagaaaaaagaa----cttcctttccttctgtctcttttcatatctgcgaaaactcttctcagGGCCATACCACATAGAATGTCCTGCTACATCTCATTAGAGTGCCCTC
i cebCap1.NW_016108310v1   N 0 I 23
s aotNan1.NW_018509740v1      91433 329 -    457564 aactaatctgaacagtcagtgatgtatgatattgaagtacaagaaacctatagatagggctgctgcaagatattcaagtcagtgacacaatgtcttgaaaaaatgagaattatccactttcacctctggcatcttcagaatattgtcctcattcctcATTGGGCATGATTTCCAAATGCTTAGGATATGACTTCATACTCAGAATATGATAT--GAAATACAAGAAAAAAGAACTTCCTTCCTTTCCTTCTATCTCTTTTTATATCTGCAAAAACTCTTCTCAGAGTCATACCACGTAGAATGTCCTGCTACATCTCATTAGAGTGCCCTC
i aotNan1.NW_018509740v1   C 0 I 27
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=3822.000000
s hg38.chr6_GL000254v2_alt   748870 4 +   4827813 ACCA
s panTro5.chr6             29722968 4 + 175400573 ACCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29952680 4 + 173848474 ACCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5762538 4 +   6154872 ACCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74463341 4 + 122973662 ACCA
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            49132 4 -    242197 AATG
i saiBol1.JH378357         I 23 C 0
s cebCap1.NW_016108310v1      63535 4 +    106389 AATA
i cebCap1.NW_016108310v1   I 23 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1      91762 27 -    457564 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376 1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=5408780.000000
s hg38.chr6_GL000254v2_alt   748874 2451 +   4827813 TAACCAACACTTAGGCCTTTTTCACCTACCCCCAAATTATATACACCTCCCTCCCTTGTCCAAGTTAAAATTAAAATATTTGCATCTATTTGAAATGCATTCATTATTTTGTCAAGAACTGTATGTACCTAGTATCATCTTGTTACTGCCTCTAGCTCCATTCTGGCACCCACGTGACAGGCATTTAATTCCATTCATTCAGTGAGTGTCCTTTCCAGCTAGACATTCTTGGGTAAAAGAACAGACAGAATCACACTTGTTGTCAGGAAAGTAAGTTCCATCACTCTCAAGCTCACAGTTctctgttcttctcattggaaggattcacctaatctatttagtgaattgtccatagacactggaacttccctctgggagattttccttatttggtttattccgtggccacacctgggtgtttgaggtgaaacacctttctaatgtttgttcatatttcacaatcccatttcttttggcaaaaggtcagggttcaggtttggacctttgggtctgaacaTATGATGTTATTGGCCatgttattttcacttattagtttgattttatttgttttattttttccttttattttaAGAGGTGGGGAGTAGTAATTTC-----ATTAAAAACTTTTGTCTTACAAATTCCCTGGAAACAATCTCATGAAAATATTTATCAATGTAAT----------------TtgtgtgtgtgtgtgtgcgtgtgAGAAGATTCCTGTTCCTAGCTATGGGCACCAGTTCCTGCTAAGTCCTACTTCATGGCTTTGCCTTGGAGAAGTACATAACAGCTACAGGTGTGAAAGTGCCCAGTCACCCAATCCCTCCCAGATGCATCTCTGCAGTAGGGACAGTGGGATTTTCTGCCTTGGG-AGCAGGTAAAACCAGTATTGTTGCAATAAACACCCTGTCACGGATATCACTTGGTAACACTATTTTGTCTCTGT-AAAATGGAGCAATAAAACTTTAAACGTTGATTATAAGTGTATGTGTGTTTATAATTTTAAGGTACAGTACTCAATTTTTCCCCAACAAAAGCAATAACTTAAACTCACCACTTTGGTTGCAGAAGACATTAAATCCTCCATATTCTTCTGTGTGTCCAGCCATTAAAGCTTATTAATAACAGGGGTAGAAAATCATATCTCATTATGCAGTGCTCCTGATGACTAACAAAGTTGAATAATTTAACCGTTTAACAAAAAAGATTAAAGTGGGCTTATACTTCACACTATCCTCCAGT-AAAAAAAAATCAAATTGATCAAATATTTACATGTTTACAAATGAAATAATTTAATAG---TATAAGACAGCATAGATTCATTTTATATTATCTCATGTAGGTAAGACTTCTTTAATCATAACTC--AATACATAAGCCATAAAAGACTGACAAATTCAAATTTATAAAAACGGTGTGCTTGACAATAACATGTTTTTAAAATCATAACCGAAGT-AAGTGACCAATGAAAATGTTGGAAATTGTATCTGCAGCTCAGACAACTGAAAAAGGACTAATCTGCTTATAGATGGAGAGCTAACAGAAGTGGAGAGACAAAGACCTGTCCACGAGAAGTCTCATGCCCCTTCCTTCACTCTGACACCTCCTTAACATGCTCCTGAAATGTCAGCATCATGAGACATGAGCTACACAATGATGCAGTATGGGAATTAAGAGGTAACCATATATTTTAATATCAGACTTGAATGAATCTTCTTTGTTTTGAGTAACATGTACACATAATTGAATAAGCACATATAGAAATCATTAAAAAAA-----GTTATTTGACAAATTACACCTTAAAAGGAGACTATACATTATTTTAAACACCATGGTGGACAAAACTGACCATGTCTTCAGCCACAGAGTAAATCTGAAAGAaatacaaataataatattaataataaCATTTTGTTGGTTATATTATTTGACCACAATAAAATAATATATAC-AATAACTAGAATTTAAAGC--ATAT-------------------ATATATATAAAGCAATATTATAGAATGGCAATTCTAGTCCTTGAAGGATTGTCTAAAATCACAGATATAAAATTAATAAGGCTTAAATAAAGGGTATGTACTTAAAGGGAATGCAATTTTTATTCAAATTACAAAGAGGTATTATTAAAACAACTTATTATGTACAAAGCACTGGGACATT-AAACTGAATCATGAAGTAATGACTTCAACCTCACAAAACTTCTCGTCTTCTAGGGGAAGCTTAAAATAAGACCAAAATGGTGGAACCATTACAAATTACAATAATGTTGTAAGAAATAAAAGATCAATAAGACCAGCCAGAGAATGTGATCATAGAAATGCTCTTAAAGTTGACCTTTTTAACTAGAGATAAAACATGGAAAAGGCAAAAACAAGGAAAATTGTGAGTGACATAATTCCTCACAGAGGAAAGAAAATTTGCAAAAAGGATGTGTTCCATTTAACAAAAGAAACCCAATATGAGAGTTTTGTA
s panTro5.chr6             29722972 2452 + 175400573 TAACCAACACTTAGGCCTTTTTCACCTACCCCCAAATTATATACACCTCCCTCCCTTGTCCAAGTTAAAATTAAAATATTTGCATCTATGTGAAATGCATTCATTATTTTGTCAAGAACTGTATGTACCTAGTATCATCTTGTTACTGCCTCTAGCTCCATTCTGGCACCCACGTGATAGGCATTTAATTCCATTCATTCAGTGAGTGTCCTTTCCAGCTAGACATTCTTGGGTAAAAGAACAGACAGAATCACACTTGTTGTCAGGAAAGTAAGTTCCATCACTCTCAAGCTCACAGTTctctgttcttctcattggaaggattcacctaatctatttagtgaattgtccatagacactggaacttccctctgggagattttccttatttggtttattccgtggccacacctgggtgtttgaggtgaaacacctttctaatgtttgttcatatttcacaatcccatttcttttggcaaaaggtcagggttcaggtttgggcctttgggtctgaacaTATGATGTTATTGGCCatgttattttcacttattagtttgattttatttgttttattttttccttttattttaAGAGGTGGGGAGTAGTGATTTC-----ATTAAAAACTTTTGTCTTACAAATTCCCTGGAAACAATCTCATGAAAATATTTATCAATGTAAT----------------TTGTGTGTGTGTGTGTGA--GAGAGAAGATTCCTGTTCCTAGCTATGGGCACCAGTTCCTGCTAAGTCCTACTTCATGGCTTTGCCTTGGAGAAGTACATAACAGCTACAGGTGTGAAAGTGCCCAGTCACCCAATCCCTCCCAGATGCATCTCTGCAGTAGGGACAGTGGGATTTTCTGCCTTGGG-AGCAGGTAAAACCAGTATTGTTGCAATAAACACCCTGTCACGGATATCACTTGGTAACACTATTTTGTCTCTGT-AAAATGGAGCAATAAAACTTTAAACGTTGATTATAAGTGTATGTGTGTTTATAATTTTAAGGTACAGTACTCAATTTTTCCCCAACAAAAGCAATAACTTAAACTCACCACTTTGTTTGCAGAAGACATTAAATCCTCCATATTCTTCTGTGTGTCCAGCCATTAAAGCTTATTAATAACGGGGGTAGAAAATCATATCTCATTATGCAGTGCTCCTGATGACTAACAAAGTTGAATAATTTAACCGTTTAACAAAAAAGATTAAAGTGGGCTCATACTTCACACTATCCTCCAGT-AAAAAAAAATCAAATTGATCAAATATTTACATGTTTACAAATGAAATAATTTAATAGTATTATAAGACAGCATAGATTCATTTTATATTATCTCATGTAGGTAAGACTTCTTTAATCATAACTC--AATACATAAGCCATAAAAGACTGACAAATTCAAATTTATAAAAATGGTGTGCTTGACAATAACATTTTTTTAAAATCATAACCGAAGA-AAGTGACCAATGAAAATGTTGGAAATTGTATTTGCAGCTCAGACAACTGAAAAAGGACTAATCTGCTTATAGGTGGAGAGCTAACAGAAGTGGAGAGACAAAGACCTGTCCACGAGAAGTCTCATGCCCCTTCCTTCACTCTGACACCTCCTTAACATGCTCCTGAAATGTCAGCATCATGAGACATGAGCTACACAATGATGCAGTATGGGAATTAAGAGGTAACCATATATTTTAATATCAGACTTGAATGAATCTTCTTTGTTTTGAGTAACATGTACACATAATTGAATAAGCACATATAGAAATCATTAAAAAAA-----GTTATTTGATAAATTACACCTTAAAAGGAGATTATACATTATTTTAAACACCATGGTGGACAAAACTGACCATGTCTTCAGCCACAGAGTAAATCTCAAAGAaatacaaataataatattaataataaCATTTTGTTGGTTATATTATTTGACCACAATAAAATAATATATAC-AATAACTAGAATTTAAAGC--ATAT-------------------ATATATATAAAGCAATATTATAGAATGGCAATTCTAGTCCTTGAAGGATTGTCTAAAATCACAGATATAAAATTAATAAGGCTTAAATAAAGGGTATGTACTTAAAGGGAATGCAATTTTTATTCAAATTACAAAGAGGTATTATTAAAACAACTTATTATGTACAAAGCACTGGGACATT-AAACTGAATCATGAAGTAATGACTTCAAGCTCACGGAACTTCTCATCTTCTAGGGGAAGCTTAAAATAAGACCAAAATGGTGGAACCATTACAAATTACAATAATGTTGTAAGAAATAAGAGATCAATAAGACCAGCCAGAGAATGTGGTCATAGAAATGCTCTTAAAGTTAACCTTTTTAACTAGAGATAAAACATGGAAAAGGCAAAGACAAGGAAAATTGTGAGTGACATAATTCCTCACGGAGGAAAGAAAATTTGCAAAAAGGATGTGTTCCATTTAACAAAAGAAAGCCAATATGAGAGTTTTGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29952684 2452 + 173848474 TAACCAACACTTAGGCCTTTTTCACCTACCCCCAAATTATATACACCTCCCTCCCTTGTCCAAGTTAAAATTAAAATATTTGCATCTATGTGAAATGCATTCATTATTTTGTCAAGAACTGTATGTACCTAGTATCATCTTGTTACTGCCTCTAGCTCCATTCTGGCACCCACGTGATAGGCATTTAATTCCATTCATTCAGTGAGTGTCCTTTCCAGCTAGACATTCTTGGGTAAAAGAACAGACAGAATCACACTTGTTGTCAGGAAAGTAAGTTCCATCACTCTCAAGCTCACAGTTctctgttcttctcattggaaggattcacctaatctatttagtgaattgtccatagacactggaacttccctctgggagattttccttatttggtttattccgtggccacacctgggtgtttgaggtgaaacacctttctaatgtttgttcatatttcacaatcccatttcttttggcaaaaggtcagggttcaggtttgggcctttgggtctgaacaTATGATGTTATTGGCCatgttattttcacttattagtttgattttatttgttttattttttccttttattttaAGAGGTGGGGAGTAGTGATTTC-----ATTAAAAACTTTTGTCTTACAAATTCCCTGGAAACAATCTCATGAAAATATTTATCAATGTAAT----------------TTGTGTGTGTGTGTGTGA--GAGAGAAGATTCCTGTTCCTAGCTATGGGCACCAGTTCCTGCTAAGTCCTACTTCATGGCTTTGCCTTGGAGAAGTACATAACAGCTACAGGTGTGAAAGTGCCCAGTCACCCAATCcctcccagatgcatctctgcagtagggacagtgggattttctgccttggg-agcaggtaaaaccagtattgttgcaataaacaccctgtcacggatatcactTGGTAACACTATTTTGTCTCTGT-AAAATGGAGCAATAAAACTTTAAACGTTGATTATAAGTGTATGTGTGTTTATAATTTTAAGGTACAGTACTCAATTTTTCCCCAACAAAAGCAATAACTTAAACTCACCACTTTGGTTGCAGAAGACATTAAATCCTCCATATTCTTCTGTGTGTCCAGCCATTAAAGCTTATTAATAACAGGGGTAGAAAATCATATCTCATTATGCAGTGCTCCTGATGACTAACAAAGTTGAATAATTTAACCGTTTAACAAAAAAGATTAAAGTGGGCTCATACTTCACACTATCCTCCAGT-AAAAAAAAATCAAATTGATCAAATATTTACATGTTTACAAATGAAATAATTTAATAGTATTATAAGACAGCATAGATTCATTTTATATTATCTCATGTAGGTAAGACTTCTTTAATCATAACTC--AATACATAAGCCATAAAAGACTGACAAATTCAAATTTATAAAAATGGTGTGCTTGACAATAACATTTTTTTAAAATCATAACCGAAGA-AAGTGACCAATGAAAATGTTGGAAATTGTATTTGCAGCTCAGACAACTGAAAAAGGACTAATCTGCTTATAGGTGGAGAGCTAACAGAAGTGGAGAGACAAAGACCTGTCCACGAGAAGTCTCATGCCCCTTCCTTCACTCTGACACCTCCTTAACATGCTCCTGAAATGTCAGCATCATGAGACATGAGCTACACAATGATGCAGTATGGGAATTAAGAGGTAACCATATATTTTAATATCAGACTTGAATGAATCTTCTTTGTTTTGAGTAACATGTACACATAATTGAATAAGCACATATAGAAATCATTAAAAAAA-----GTTATTTGATAAATTACACCTTAAAAGGAGATTATACATTATTTTAAACACCATGGTGGACAAAACTGACCATGTCTTCAGCCACAGAGTAAATCTCAAAGAaatacaaataataatattaataataaCATTTTGTTGGTTATATTATTTGACCACAATAAAATAATATATAC-AATAACTAGAATTTAAAGC--ATAT-------------------ATATATATAAAGCAATATTATAGAATGGCAATTCTAGTCCTTGAAGGATTGTCTAAAATCACAGATATAAAATTAATAAGGCTTAAATAAAGGGTATGTACTTAAAGGGAATGCAATTTTTATTCAAATTACAAAGAGGTATTATTAAAACAACTTATTATGTACAAAGCACTGGGACATT-AAACTGAATCATGAAGTAATGACTTCAAGCTCACGGAACTTCTCATCTTCTAGGGGAAGCTTAAAATAAGACCAAAATGGTGGAACCATTACAAATTACAATAATGTTGTAAGAAATAAGAGATCAATAAGACAAGCCAGAGAATGTGGTCATAGAAATGCTCTTAAAGTTAACCTTTTTAACTAGAGATAAAACATGGAAAAGGCAAAGACAAGGAAAATTGTGAGTGACATAATTCCTCACGGAGGAAAGAAAATTTGCAAAAAGGATGTGTTCCATTTAACAAAAGAAAGCCAATATGAGAGTTTTGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5762542 2446 +   6154872 TAACCAACACTTAGGCCTTTTTCACCTACCCCCAAATTATATACACCTCCCTCCCTTGTCCAAGTTAAAATTAAAATATTTGCATCTATGTGAAATGCATTCATTATTTTGTCAAGAA----ATGTACCTAGTATCATCTTGTTACTGCCTCTAGCTCCATTCTGGCACCCATGTGATAGGCATTTAATTCCATTCATTCAGTGAGTGTCCTTTCCAGCTAGACATTTTTGGGTAAAAGAACAGACAGAATCACACTTGTTGTCAGAAAAGTAAGCTCCATCACCCTCAACCTCACAGTTctctgttcttctcattggaaggattcacctaatctatttagtgaattgtccatagacactggaacttccctctgggagattttccttatttggtttattccgtggccacacctgggtgtttgaggtgaaacacctttctaatgtttgttcatatttcacaatcccatttcttttggcaaaaggtcagggttcaggtttgggcctttgggtctgaacaTATGATGTTATTGGCCatgttattttcacttattagtttgattttatttgttttattttttccttttattttaAGAGGTGGGGAGTAGTAATTTC-----ATTAAAAACTTTTGTCTTACAAATTCCCTGGAAACAATCTCATGAAAATATTTATCAATGTAAT----------------T--TGTGTGTGTGTGTAA--GAGAGAAGATTCCTGTTCCTAGCTATGGGCACCAGTTCCTGCTAAGTCCTACTTAATGGCTTTGCCTTGGAGAAGTACATAACAGCTACAGGTGTGAAAGTGCCCAGTCACCCAATCCCTCCCAGATGCATCTCTGCAGTGGGGACAGTGGGATTTTCTG-CTTGGG-AGCAGGTAAAACCAGTATTGTTGCAATAAACACCCTGTCACGGATATCACTTGGTAACACTATTTTGTCTCTGT-AAAATGGAGCAATAAAACTTTAAACGTTGATTATAAGTGTATGTGTGTTTATAATTTTAAGGTACAGTACTCAATTTTTCCCCAACAAAAGCAATAACTTAAACTCACCACTTTGGTTTCAGAAGACATTAAATCCTCTATATTCTTCTGTGTGTCCAGCCATTAAAGCTTATTAATAACAGGGGTAGAAAATCATATCTCATTATGCAGTGCTCCTGATGACTAACAAAGTTGAATAATTTAACCGTTTAACAAAAAAGATTAAAGTGGGCTCATACTTCACACTATCCTCCAGT-AAAAAAAAATCAAATTGATCAAATATTTACATGTTTACAAATGAAATAATGTAATAGTATTATAAGACAGCATAGATTCATTTTATATTATCTCATGTAGGTAAGACTTCTTTAATCATAACTC--AATACATAAGCCATAAAAGACCGACAAATTCAAATTTATAAAAATAGTGTGCTTGACAATAACATTTTTTTAAAATCATAACCGAAGTGAAGTGACCAATGAAAATGTTGGAAATTGTATTTGCAGCTCAGACAACTGAAAAAGGACTAATCTGCTTGTAGGTGGAGAGCTAACAGAAGTGGAGAGACAAAGACCTGTCCGTGAGAAGTCTCATGCCCCTTCCTTCACTCTGACACCTCCTTAACATGCTCCTGAAATGTCAGCATCATGAGACATGAGCTACACAATGATGCAATATGGGAATTAAGAGGTAACCATATATTTTAATATCAGACTTGAATGAATCTTCTTTGTTTTGAGTAACATGTACACATAATTGAATAAGCACATATAGAAATCATTTTAAAAA-----GTTATTTGATAAATTACACCTTAAAAGGAGATTATACATTATTTTAAACACCATGGTGGACAAAACTGACCATGTCTTCAGCCACAGAGTAAATCTCAAAGAAATACAAATAATAACATTAATAATAACATTTTGTTGGTTATATTATTTGACCACAATAAAATAATATATAC-AATAACTAGAATTTAAAGC--ATAT-------------------ATATATATAAAGCAATATTATAGAATGGCAATTCTAGTCCTTGAAGGATTGTCTAAAATCATAGATATAAAATTAATAAGGCTTAAATAAAGGGTATGTACTTAAAGGGAATGCAATTTTTATTCAAATTACAAAGAGGTATTATTAAAACAACTTATTATATACAAAGCACTGGGACATT-AAACTGAATCATGAAGTAATGACTTCAAGCTCACAAAACTTCTCATCTTCTAGGGGAAGCTTAAAATAAGACCAAAATGGTGGAACCATTACAAATTACAATAATGTTGTAAGAAATAAGAGATCAATAAGACCAGCCAGAGAATGTGGTCATAGAAATGCTCTTAAAGTTGACCTTTTTAACTAGAGATAAAACATGGAAAAGGCAAAGACAAGGAAAATTGTGAGTGACATAATTCCTCACAGAGGAAAGAAAATTTACAAAAAGGATGTGTTCCATTTAACAAAAGAAAGCCAATATGAGAGTTTTGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74463345 2444 + 122973662 TAACTAACACTTAGGCCTTTTTTACCTACCCCCAAATTATATACACATCCCTCCCTTGTCCAAGTTAAAATTAAAATATTTGCATCTATGTGAAATGCATTCATTATTTTGTCAAGAA----CTGTACCTAGTATCATCTTGTTACTGCCTCTAGCTCCATTCTGGCACCCATGTGATAGGCATTTAATTCCATTCATTCAGTGAGTGTCCTTTCCAGCTAGACATTCTTGGGTAAAAGAACAGACAGAATCACACTTGTTGTCAGGAAAGTAAGCTCCATCACCCTCAAGCTCACAGTTctctgttcttctctttggaaggattcacctaatctatttagtgaatcgtccatgggcactggaacttccctgtgagagattttccttatttggtttatcccatggccacacctgggtgtttgaggtgaaacacccttctaatgtttgttcatatttcacaatcccatttcttttggcaaaaggtcagggttcaggtttgggcctttgggtctgaacaTATGATGTTATTGGCCATTTT-TTTTCACTTATTAGTTTGATTTTATTTGTTTCATTTTTTCCTTTTATTTTAAGAGGTGGGGAGTAGTAATTTC-----ATTAAAAACTTTTGTCTTACAAACTCCCTGGAAACAATCTCATGAAAATATTTATCAATGTAAT----------------TTTTGTGCATGTGTGTGA--GAGAGAAGATTCCTGTTCCTAGCTATGGGCACCAGTTCCTGCTAAGTCCTACTTAATGGCTTTGCCTTGGAGAAGTACATAACAGCTACAGGTGTGAAAGTGCCCAGTCACCCAATCCTTCCCAAATGCATCTCTACAGTAGGGACAGTGGGATTTTCTGCCTTGGG-AGCAGGAAAAACCAGTATTGTTGCAATAAACACCCTGTCACGGACATCACTTGGTAACACTGTTTTGTCTCTGT-AAAATGGAGCAATAAAACTTTAGACGCTGATTATAAGTGTATGTGTGTTTATAATTTTAAGGTACAGTACTCAATTTTTCCCCAACAAAAGTAATAACTTAAACTCACCACTTTGGTTGCAGAAGACATTAAATCCTCTATATTCTTCTGTGTGTCCAGCCATTAAAGCTTATTAATAACAGCGGTAGAAAATCATATCTCATTATGCAGTGCTCCTGATGACTGACAAAGTTGAATAATTTAGCCATTTAACAAAAAAGATTAAAGTGGGCTCATACTTCACATTATCCTCCAGT---AAAAAAATCGAATTGATCAAATATTTACA--TTTACAAATGAAATAATTTAATAGTATTATAAGACAGTATAGATTCATTTTATATTATCTCATGTAGGTAAGATTTCTTTAATCATAACTC--AATACATAAGCCATAAAAGACTGACAAATTCAAATTTATAAAAAGGGTGTGAATGACAATA--TGTTTTTTTAAATCATAACCAAAGTGAAGTGACCAATGAAAATGTTGAAAATTGTATTTGCAGCTCAGACAACTGAAAAAGGACTAATCTGCTTATAGGTGGAGAGCTAACAGAAATGCAGAGACAAAGACCTGTCCACGAGAAGCCTCATGCCCCTTCCTTCACGCTGACACCTCCTCAACATGCTCCTGAAATGTCAGCATCATGAGACATGAGCTACAAAACGATGCAATATGGGAATTAAGAGGTAACCATATATTTTAATATCAGCCTTGAATGAATCTTCTTTGTTTTGAGTAACATGTACACATAATTGAATAAGCATATATAGAAATCA-TAAAAAAA-----GTTATTTGATAAATTACACCTTAAAAGGAGATTATACATTATTTTAAACACCATGGTGGACAAAACTGACTATGTCTTCAGCCACAGAGTAAATCTCAAAGAAATACAAATAGTAACATTAATAATAACATTTTATTGATTATATTATTTGACCACAATAAAataatatatac-aataactagaatttaaagcatatat-------------------atatatataAAGCAGTATTATAGAATGGCAATTCTAGTCCTTGAGGGATTGTCTAAAATCATAGATATAAAATTAATAAGGCTTAAATAAAGGGCATCTACTTAAAGGGAATGCAATTTTTATTCAACTGACAAAGAGGTACTATTAAAACAACTTATTATGTACAAAGCACTGGGGCATTGAAACTGAATCATGGAGTAATGACCTCAACCTCACAAAATTTCTCATATTCTAGGGGAAGCTTAAAATAAGACCAAAATGGTGGAACCATTAAAAATTACAATAACGTTGTAAGAAATAAAAGATCAATAAGACCAGCCAGAGAATGTGGTCACAGAAATGCTCTGAAAGTTGACCTTTTTAACTAGAGATAAAACATGGAAAAGGCAAAGACAAGGAAAATTGTGAATGACATAATTCCTTACAGAGGAAAGAAAATTTGCAAAAAGGATGTGTTCCATTTAACAAAAGAAAGCCAATATAAGGGTTTTGTA
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            49136 2447 -    242197 TAACTAACACATAGGCCTTTTTTACCTACCCCCAAATTATATACACCTCCCTCCCTTGTCCAAATT-AAATTAAAATATTAACATCTATGCAAAATGCAGTCATTATTTTGTCAAGAA----CTGTATCTAGTATCATCTTGTTACTGCCTCTAGTTCCATTCAGGCACCCAAGTGATGCGCATTTAATTCCATTAATTCAGTAAATGTCCTTTCCAGATGTACATTCTTGGGCACAAGAATAGACAGAATCACAC---TCTTTAGCAAAGTAAGGTCCATTACCCGCAGGCTCACAGTactctgttcttctcttcggaaaaattcacctaatctatctggagaatcatccatggacactggaacttccctctgggagattttccttatttggcttattttgtggtcatacctgggtgtttgagatgaaacaccctcctaatgtttcttcatatttcacaatctcatttcttttggcaaaaggccaggcctcaggtttgcacctttgggtttgaacaTAtg----tttttgtcatgtttttttcacttgttagtttggttttgtttta---tgttttttcttttattttAAGAGGTGGGGAGTAGTAATTTTATTTTATTAAAAACTTCTCTCTTACAAATTTTCTGTAAATGATGTCATGAACATATTTATCAATGTATT-------------------TTTTTTTTTTTTTG---GTGAGAAGATTCCTGTTCCTAGCCATGGGTACCAGTTTCTGCCAAGTCCTACTTAATGGCTTTGCCTTGGAGAATTGCCTCACAGCTATAGGTATGAAAGTGCCCAGTCACCCAGTCCCTCCCAATTGCATCTCTACAGTAGAGACAGTGGGCTTTTCTGCCTTGGG-AGCAGGTAAAACCAGTATTGTTTCAAAGAACACCCTGTAATGGACATAATTTGCTAACACTATTTTGGCTCTGTAAAAATGGAGCAATAAAACTTTAAACGTTCATTATAAGTGTATGTGTGTTTATAATCTTAAGGTACAGTACTCAATTTTTCCCCAACAAAAGTAATAACTTAAACTCACTACTTGGGTTGCAGAAGACATTAAATCCTCTATATTCTTCTGTGTGTCCAGCCATGGAAGCTTATTAATAAAAGGAGTAGAAAATCATATCTCATTATACAGTGCTTGTGATGACTAACAAGGGTGAATACTTTAGCCATTTAACATAAAATATGAAACTGGGGTCATACTTCCCACTATCTACCAGT--AAAAAAAATCAAATTGATCAAATATTTACATGTTTACAAATGAAATCATTTAATAGTATTCTAAGACAGTATAGATTCATTTTATATTGTCTGATGTAGGTAAAACTTCTTTAATCATAACTCAGAATACCTGAGCCATAAAAGACTAACAAATTCAAATTTATAAAAATGGTGTGCATGACAACAATATTTTTTT--AATCATAACCAAAGTGAAGTGACCAATGGAAATGTTGGAAATTATATTTGCAGCTTGGACAACTG-AAAAGGACTCATCTGCGTATAGGTGGAGAGCTAACAGAAATAGAGAGACAAAAACCTGTCCACAAGAAGCCTCATGCCCCTTCCTTTGCTCTGACACCTCCTTAACATGCTCCTGAAAGGACAGCATCATGAGACATGAGCTACACAATGTTGCAATAAGGGAATGAAGAGGTAACCATATATTCTAATATCAGGCTTGAATGAATCTTCTTTGTTTTGAGTAACAGGTACACACAATTGAGTAAGCATATATAGAAATCATAAAAAAAT-AAAAGCTGTTTGATAAATTACACCTTAAAATGAGATTATACATTATTTTAAACATCATGGTAGACAAAACTGACCAAGTCTTCAGCCACAGAGTAAATCTCAAAGAAATCCAAA---TAACATTAATAATAACATTTTGTTGGTTATATTATTTGACCCCAataaaataatatatgtaaataactagaatttaaagc--atat--atataaagcaatatcatatatatataaagtaatattatagaatGCCAATTCTAGTCCTTGAAGGATTGTCTAAAATCATAGACATAAAATTAATAGGGCTGAAATAAAT-ATATGTAGTTAAAGGAAATGAAATTGTTATTCAAATTACAAAGGAGTATTATTAAAAC---TTATTATGTACAAA-CACTGGAACACAGAAACTGAATCATGAAATAATGATTTCAATCTCACAAAATTTTTTATCTTCTAGAAGAGGCTTAAAATAAGACCAAAAGAGTGGAACCATTACAAATTATGATAATGTTATAAGAAATAAAAGATCAATAAGATTTCATGGCGAATGTGGTCATAGAGATGCTCTTCAAGTTGATCTTTTTAACTAGAGATAAAAGGTGGAAAAGGCAAAGACAAGAAATATTGTGAATGAC--AATTTCTCACAGAATAAGGAAAATTTGCAAAAAGAATGTGTGTCATTCAACAAAAGAAAGCCAATATAAGAGTTT----
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      63539 2473 +    106389 TAACTAACACATAGGCCTTTTTTACCTACCCCAGAATTATATACACCTCCCTCCCTTGTCCAAATTAAAATTAAAATATTAGCATCTATGCAAAATGCA-CCATTATTTTGTAAAGAA----CTGTATCTAGTATCATCTTATTACTGTCTCTAGTTCCATTCAGGCACCCAAGTGATGGGCATTTAATTCCATTAATTCAGTAAGTGTCCTTTCCAGCTGTACCTTCTTGGGCACAAGAACAGACAGAATCACAC---TCTTCAGCAAAGTAAGGTCCATCACCCACAGGCTCACAGTAATCTGTTCTTCTCTTCAGAAGAATTCACCTAATCTATCTGGAGAATCATCCATGGACACTGGAACTTCCCTCTGGGAGATTTGCCTTATTTGGTTTATTTTGTGGTCATACCTGGGTGTTTGAGGTGAAACACCCTTCTAATGTTTGTTCATATTTCACAATCCCATTTCTTTTGGCAAAAGGCCAGGGTTCAGGTTTGTGCCTTTGGGTCTCAACATATG--tttttttgtcatgtttttttcacttgttagtttggttttgtttca--tttttttttcttttattttAAGAGGTGGGGAGTAGTAATTTCATTTTATTAAAATCTTCTCTCTTACAGATTTTCTGGAAACGATCTCATGAACATATTTATCAATGtattattattattattattattattattattattTTG---GTAAGAAGATTCCCATTCCTAGCTATGGGTACCAGTTCCTGCCAAGTCCTACTTAATGGCTTTGCCTTGGAGAATTGTATCACAGCTACAGGTATGAAAGTGCCCAGTCGCCCAGTCCCTCCCAATTGCATCTCTACAGTAGAGACAGTGGGCTTTTCTGCCTTGGG-AGCAGGTAAAACAAGTATTGTTTCAATAAACACCCTGTAATGGACATAATTTGGTAACACTATTTTGGCTCTGTAAAAATGGAGCAATAAAACTTTAAACATTCATTATAAGTGTATGTGTGTTTATAATTTTAAGGTACAGTACTCAATTTTTCCCCAACAAAAGTAATAACTTAAACTCACTACTTTGGTTGCAGAAGACATTAAATCCTCTATATTCTTCTGTGTGTCCAGCCATTGAAGCTTATTAATAAAAGGGGTAGGAAATCATATATCATTATGCAGTGCTTGTGATGACTAATAAGGTTGAATACTTTAGCCATTTAACATAAAATATGAAACTGGGCTCATACTTCACACTATCTACCAGT--AAAAAAAATAAAATTGATCAAATATTTACATGTTTACAAATGAAATAATTTAATAGTATTCTAAGACAGTATAGATTCATTTTATATTGTCTGATGTAGGTAAAACTTCTTTAATCATAACTGAGAATACCTAAGCCATAAAAGACTGACAAATTCAAATTTATAAAAATGGTGTGCATGACAACAATATTTTTTT--AATCATAACCAAAGTGAAGTGACCAATGAAAATGTTGGAAATTATATTTGCAGCTCGGACAACTG-AAAAGGACTGATCTGCTTATAGGTGGAGAGCTAACAGAAATTGAGAGACAAAAACCTGTCCACGAGAAGCCTCATGCCCCTTCCTTTGCTCTGACACCTCCTTAACATGCTCCTGAATGGACAGCATCATGAGACATGAGCTACACAATGTTGCAATAAGGGAATGAAGAGTTCACCAAATATTCTAATATCAGGCTTGAACGAATCTTCTTTGTTTTGAGTAACAGGTACACATAATTGAATAAGCATATATAGAAATCATAAAAAAAT--TGAGTTGTTTGATAAATTACACCTTAAAAGGAGATTATACATTATTTTAAACACCATGGTAGACAAAACTGACCAAGTCTTCAGTCACAGAGTAAATCTCAAAGAAATCCAAA---TAACGTTAATAATAACATTTTGTTGGTTATATTATTTGACCCCAATAAAATAATATATCCAAATAGCTAGAATTTCAAGC--atatacatataaagcaatatcatatatatataaagcaatattataGAATGCCAATTCTAGCCCTTGAAGGATTGTCTAAAATCATAGACATAAGATTAATAAGGCTGAAATAAATGATATGTAGTTAAAGGAAATGCAATTTTTATTCAAATTACAAAGGAGTATTATTAAAAC---TTATTATGTGCAAA-CACTGGAACTCAGAAACTGAATCATGAAGTAATGACTTCAATCTCACAAAATTTCTTATCTTCTAGAAGAGGCTTAAAATAAGACCAAAAGAGTGGAGCCATTAGAAATTACAATAATGTTATAAGAAATAAAAGAACAATAAGATTTCATGGCAAATGTGGTCATAGAGATGCTCTTCAAATTGACCTTTTTAACTAGAGATAAAAAGTGGAAAAGGCAAAGACAAGAAAAATAGTGAATGACATAATTCATCACAGAATAAAGAAAATTTGCAAAAAGAATGTGTGTCATTCAACAAAAGAAAGCCAATATAAGAGTTT----
i cebCap1.NW_016108310v1   C 0 C 0
s aotNan1.NW_018509740v1      91789 2430 -    457564 TAACTAACACATAGGCCTTTTTTACCCACCCCAAAATTATATACACCTCCCTCCCTTGTCCAAATTAAAAATAAAATATTAGCATCTATGCAAAATGCAGTCATTATTTTGTCAAGAA----CTGTACCTAGTTTCATCTTGTTACTGCCTCTAGTTCCATTCAGGCACACAAGTGATGGGCATTTAATTCCATTAATTCAGTAAGTGTCCTTTCCAGCTATACATTCTTGGGCAGAAGAACAGATAGAATCACAC---TCTTCAGCAAAGTAAGGTCCATCATCTGCAGGCTTACAGTTCTCTGTTCTTCTCTTCGGACGAATTCACCTAATCTATCTGGAGAATCATCCATGGACACTGGAACTTCCCTCTGGGAGATTTTCCTTATTTAGTTTAGTTCGTGGTGATACCTGGGTGTTTGAGGCTAAACACCCTTCTAATGTTTGTTCATATTTCACAATCCCATTTCTTTTGGCAAAAGGCCAGGGTTCAGGTTTGCACCTTTGTTTCTGAACATATG---ttttttgtcatgattttttcacttgttaatttggttttgtttct-ttttttttttcttttattttAAGAGGTGGGGAGTAGTAATTTCATTTTATTAAAAACTTCTCTCTTACAAATTTTCTGGAAACGATCTCATGAATATATTTATCAATGTAAt----------------ttttttttttttttttG---GTAAGAAGATTCCTGTTCCTAGCTATGGGTACCAGTTCCTGTCAAGTCCTACTTAATGTCTTTGCCTTGGAGAATTGCACCACAGCTACAGGTATGAAAGTG--------CCCAGTCCCTCCCAATTGCATCTCTACAGAAGAGACAGTGGGCTTTTCTGCCTTGGGAAGCAGGTAAAACCAGTATTGTTTCAATAAACACCCTGTAATGGACATAATTTGGTAACACTATTTTGACTGTGTAAAAATGGAGCAATAAAACTTTAAACGTTCTTTATAAGTGTATGTGTGTTTATAATTTTAAGGTACAGTACTCAATTTTTCCCTAACAAAAGTAATAACTTAAACTCACTACTTTGGTTGAAGAAGACATTAAATCCTCTATATTCTTCTGTGTGTCCAGCCATTGAAGCTTATTAATAAAAGGGGTAGAAAATCATATCTCATTATGCAGTGCTTGTGATGACTAACAAGGTTGAATACTTTAGCCATTTAACATAA--------------------------ACTATCTACCAGTTAAAAAAAAATCAAATTGATCAAATATTTACATGTTTATAAATGAAATAATTTAATCATATTCTAAGACAGTATAGATTCATTTTATATTGTCTGATGTAGGTAAAACTTCTTTAATCATAACTCAGAATACCTAAGCCATTAACGACTGACAAATTCAAATTTATAAAAATGGTGTGCATGACAACAATATTTTTTT--AATCATAACCAAAGTGAAGCGACCAATGAAAATGTTGGAAATTGTATTTGCAACTTGGACAACTG-AAAAGGACTAATCTGCTTATAGGTGGAGAGCTAACAGAAATGGAGAGACAAAAACCTGTCCACAAGAAGCCTCATGCCCCTTCCTTTGCTCTGATGCCTCCTTAACATGCTCCTGAAAGGACAGCATCATGAGACATGAGCTACACAATGTTGCAATAAGGGAATGAAGAGGTAACCATATATTCTAATATCAGGCTTGAACGAATCTTCTTTGTTTTGAGTAACAGGTACACATAATTGAGTAAGCATATATAGAAATCATAAAAAAATTAAAAGTTGTTTGATAAATTACATCTTAAAAGGAGATTATACATTATTTTAAACACCATGGTAAACAAAACTGACAAAGTCTTCAGCCACAGAGTAAATCTCAAAGAAATCCAAA---TAACATTAATAATAATATTTTGTTGGCTATATTATTTGACCCCAATAAAATAATATATGTAAATAACTAGAATTTAAAGC--ACATATAAATAAAGCAATATCATATATATATAAAGCAATATTATAGAATGCCAATTCTAGTCCTTGAAGGATTGTCTAAAATCATAGACATAAAATTAATAAGGCTGAAATAAATGGTATGTAGTTAAAGGAAATGCAATTTTTATTCAAATTACAAAGGAGTATTATTAAAAC------TTATGTACAAA-CACTGGAACACAGAAACTGAATCATGAAGTAATGACTTCAATCTCACAAAATTCCTTATCTTCTAGAAGAGGCTTAAAATAAGACCAAAAGGGTGGAGCCATTACAAATTACAATAATGTTATAAGAAATAAAAGATCCATAAGATTTCACAGAGAATGTGATCATAGAGATGCTCTTCAAGTTGACCTTTTTAACTAGAGATAAAACGTGGAAAAGGCAAAGACAAGAAAAATTGTGAATGACATAATTCCTCACAGAAGAAGGAAAATTTGCAAAAAGAATGTGTGCCATTCAACAAAAGAAAGCCAATATAAGAGTTTTGTA
i aotNan1.NW_018509740v1   I 27 I 6
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376    1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=21045.000000
s hg38.chr6_GL000254v2_alt   751325 15 +   4827813 AGCAATGTAAGCAAG
s panTro5.chr6             29725424 15 + 175400573 AGCAATGTAAGCAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29955136 15 + 173848474 AGCAATGTAAGCAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5764988 15 +   6154872 AGCAATGTAAGCAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74465789 15 + 122973662 AGCAATGTAAGCAAG
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            51583 10 -    242197 -----TGTAAGTAGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      66012 10 +    106389 -----TGTAAGTAAG
i cebCap1.NW_016108310v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1      94219  6 -    457564 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376  1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=3501267.000000
s hg38.chr6_GL000254v2_alt   751340 1515 +   4827813 ATGAAGAATTAAATGGTATTAAGTTGGAGAGAGGATGAGGTAAATTTGCTTTCTTCAAAGTAAAAGGTTTGGGTGTAAATTCTAACCTA--------------------GTGAGGAGGGATTATATTATCCAACGTAATGTTTTTGTACATTTATTCAACACACTGCAACATATTCATCATCCTTACTAAATAATTGTTACACATGTTGT-AAATAAAATCCAAGGagtcctgtatattcataaggttaattaatcctcacaccaaccatgcatattaaataccaactttatcctcctcttgcataagatgaaacagagttacagagagttatttgcccacaataacatgctttgaatgggagagccaaagtttggacaaaggcaatctgggtccaaaaccctgactctt-aCTCTTATGTGATGATGCCTCTT--------------GGTAATTCCGACAAGCTCAAGCTCTATCTAAGGAGGAGATAGACAAAGGGAGGAAAATCTGTGGCTGGATTTGGAGGATGTTCCAGGATAATGATTGAGAATAATGCATGGCCTTTTGTATGGTCTTTATTTGGGATTCCACAGGTACCAGGAAAGTCTCACTGGGTCCCATTCCCCTCATCGTTGGAACTGGAGCACATTCAAACTGGGCTTACTGCCTAGGAAGGAAGTTAATGTCTCTTCCAACCACAAACAGCAAGGGGTTGTTTTGAAAGTCCATGAAAGCTGAACTTGATTAGAATAAAGCATTGATTTGATGCAGCAGCCTTATGATGCAGAACAGGCTGGGTTACTATGTGTACAATTCCCCAGCTCAGATGTGGGAAATTATGTTTCCACATCGACCCTGTGCTCCCTGGGAAGAAGGTTCTCCACATGCTGAGTAGAGTGTGGTTGCTCCATTGGGTCGATGCCAGCTGCCTTTTTGTTCCTCCCCACCTCTGGCTTATCTGCTAACGCCCGTTGGAGAATCACTCTGAGAGATTCCTTCAGCCTTTTCTTTCTGAGGCTCCCCACAAAGAAATAAATGATAGGGTTGGCGCTGCTGTTTATAATGAGGAACAAGGAAATTAAATAGGAGGTGGTGACAAACATTTTGAAATCTGTTATGAGGGGTGCCACGCTCAGGGGTAGGGCCCAGAGTAGGAACATGGGGGCCGAGATCTGCACCACCGCATAGACCCTGGTGGCCTTTTGCTGCTGGGAGCAGCACAGGAATCTAATGAGTAGAGTCAGACTCGACACACACATCACAAGTGAAAGGATAGCATGGAAGAGCCCAGAAAGCTTTAGAAATATGACACATGCCTTTACATGTTTCCAGTAAGTTAGGAAAAGTGATTTTACTATGTTGATGCAAAAAGGCAGGCCCCAGATGAGGGTGCAGACAACATTAGATGTGTATTTTGGGCGGTGGCATCTGTACCAGATGGGGAAGAGGACACACACACACCGCTCTGTGCTGATGGCCACCAGGAGACAGAGACACACCTCAAAGGAGAAGGGAGACAATATGGCCAGGAAATCAGGGATAAAAAACACGA
s panTro5.chr6             29725439 1516 + 175400573 ATGAAGAATTAAATGGTATTAAGTTGGAGAGAGGATGAGGTAAATTTGTTTTCTTCAAAGTCAAAGGTTTGGGTGTAAATTCTAACCTA--------------------GTGAGGAGAGATTATATTATCCAACGTAATGTTTTTGTACATTTATTCAACACACTGCAACATATTCATCATCCTTACTAAATAATTGTTACACATGTTGT-AAATAAAATCCAAGGagtcctgtatattcataaggttaattaatcctcacaccaaccatgcatattaaataccaactttatcctcctcttgcataagatgaaacagagttacagagagttatttgcccacaataacatgctttgaatgggagagccaaagtttggacaaaggcaatctgggtccaaaaccctgactcttaactcttatgtgatGATGCCTCTT--------------GGTAATTCTGACAAGCTCAAGCTCTATCTAAGGAGGAGAGAGACAAAGGGAGGAAAATCTGTGGCTGGATTTGGAGGCTGCTCCAGGATAATGATTGAGAATAATGCATGGCCTTTTGTATGGTCTTTACTTGGGATTCCACAGGTACCAGGAAAATCTCACTGGGTCCCATTCCCCTCATCGTTGGAACTGGAGCGCATTCATACTGGGCTTACTGCCTAGGAAGGAAGTTAATGTCTCTTCCAACCACAAACAGCAAGGGGTTGTTTTCAAAGTCCATGAAAGCTGAACTTGATTAGAATAAAGCATTGATTTGATGCAGCAGCCTTATGAGGCAGAACAGGCTGGGTTACTATGTGTACAAGTCCCCAGCTCAGATGTGGGAAATTATGTTTCCACATCGACCCTGTGCTCCATGGGAAGAAGGTTCTCCACATGCTGAGTAGAGTCTGGTTGCTCCATTGGGTCGATGCCAGCTGCCTTTTTGTTCCTCCCCACCTCTGGCTTATCTGCTAACGCCCGTTGGAGAATCACTCTAAGAGGTTCCTTCAGCCTTTTCTTTCTGAGGCTCCCCACAAAGAAATAAATGATAGGGTTGGCACTGCTGTTTATAATGAGGAACAAGGAAATTAAATAGGAGGTGGTGACAAACATTTTGAAATCTGTTATGAGGGGTGCCACGCTCAGGGGTAGGGCCCAGAGCAGGAACATGGTGGCCGAGATCTGCACCACCGCATAGACCCTGGTGGCCTTTCGCTGCTGGGAGCAGCACAGGAATCTAATGAGTAGAGTCAGACTGGACACACACATCACAAGTGAAAGGATAGCATGGAAGAGCCCAGAAAGCTTTAGAAATATGACACATGCCTTTACATGTTTCCAGTAAGTTAGGAAAAGTGATTTTACTATGTTGATGCAAAAAGGCAGGCCCCAGATGAGGGTGCAGACAACATTAGATGTGTATTTTGGGCGGTGGCATCTGTACCAGATGGGGAAGAGGACACACACACACCGCTCTGTGCTGATGGCCACCAGGAGACAGAGACACACCTCAAAGGAGAAGGGAGACAATATGGCCAGGAAATCAGGGATAAAAAACACGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29955151 1516 + 173848474 ATGAAGAATTAAATGGTATTAAGTTGGAGAGAGGATGAGGTAAATTTGTTTTCTTCAAAGTCAAAGGTTTGGGTGTAAATTCTAACCTA--------------------GTGAGGAGAGATTATATTATCCAACGTAATGTTTTTGTACATTTATTCAACACACTGCAACATATTCATCATCCTTACTAAATAATTGTTACACATGTTGT-AAATAAAATCCAAGGagtcctgtatattcataaggttaattaatcctcacaccaaccatgcatattaaataccaactttatcctcctcttgcataagatgaaacagagttacagagagttatttgcccacaataacatgctttgaatgggagagccaaagtttggacaaaggcaatctgggtccaaaaccctgactcttaactcttatgtgatGATGCCTCTT--------------GGTAATTCTGACAAGCTCAAGCTCTATCTAAGGAGGAGAGAGACAAAGGGAGGAAAATCTGTGGCTGGATTTGGAGGCTGCTCCAGGATAATGATTGAGAATAATGCATGGCCTTTTGTATGGTCTTTACTTGGGATTCCACAGGTACCAGGAAAATCTCACTGGGTCCCATTCCCCTCATCGTTGGAACTGGAGCGCATTCAAACTGGGCTTACTGCCTAGGAAGGAAGTTAATGTCTCTTCCAACCACAAACAGCAAGGGGTTGTTTTCAAAGTCCATGAAAGCTGAACTTGATTAGAATAAAGCATTGATTTGATGCAGCAGCCTTATGAGGCAGAACAGGCTGGGTTACTATGTGTACAAGTCCCCAGCTCAGATGTGGGAAATTATGTTTCCACATCGACCCTGTGCTCCATGGGAAGAAGGTTCTCCACATGCTGAGTAGAGTCTGGTTGCTCCATTGGGTCGATGCCAGCTGCCTTTTTGTTCCTCCCCACCTCTGGCTTATCTGCTAACGCCCGTTGGAGAATCACTCTAAGAGGTTCCTTCAGCCTTTTCTTTCTGAGGCTCCCCACAAAGAAATAAATGATAGGGTTGGCACTGCTGTTTATAATGAGGAACAAGGAAATTAAATAGGAGGTGGTGACAAACATTTTGAAATCTGTTATGAGGGGTGCCACGCTCAGGGATAGGGCCCAGAGCAGGAACATGGTGGCCGAGATCTGCACCACCGCATAGACCCTGGTGGCCTTTCGCTGCTGGGAGCAGCACAGGAATCTAATGAGTAGAGTCAGACTGGACACACACATCACAAGTGAAAGGATAGCATGGAAGAGCCCAGAAAGCTTTAGAAATATGACACATGCCTTTACATGTTTCCAGTAAGTTAGGAAAAGTGATTTTACTATGTTGATGCAAAAAGGCAGGCCCCAGATGAGGGTGCAGACAACATTAGATGTGTATTTTGGGCGGTGGCATCTGTACCAGATGGGGAAGAGGACACACACACACCGCTCTGTGCTGATGGCCACCAGGAGACAGAGACACACCTCAAAGGAGAAGGGAGACAATATGGCCAGGAAATCAGGGATAAAAAACACGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5765003 1516 +   6154872 ACGAAGAATTAAATGGTATTAAGTTGGAGAGAGGATGAGGTAAATTCGTTTTCTTCAAAGTCAAAGGTTTGGGTGTAAATTCTAACCTA--------------------GTGAGGAGGGATTATATTATCCAACATAATGTTTTTGTACATTTATTCAACACACTGCAACATATTCATCATCCTTACTAAATAATTGTTACACATGTTGT-AAATAAAATCCAAGGagtcctgtatattcataaggttaattaatcctcacaccaaccatgcatattaaataccaactttatcctccttttgcataagatgaaacagagttacagagagttatttgcccacaataacatgctttgaatgggagagccaaagtttggacaaaggcaatctgggtccaaaaccctgactcttaactcttatgtgatGATGCCTCTT--------------GGTAATTCCGACAAGCTCAAGCTCTATCTAAGGAGGAGATAGACAAAGGGAGGAAAATCTGTGGCTGGATTTGGAGGATGCTCCAGGATAATGATTGAGAATAATGCATGGTCTTTTGTATGGTCTTTATTTGGGATTCCACAGGTACCAGGAAAGTCTCACTGGGTCCCATTCCCCTCATCGTTGGAACTGGAGCGCATTCAAACTGGGCTTACTGCCTAGGAAGGAAGTTAATGTCTCTTCCAACCACAAAGAGCAAGGGGTTGTTTTGAAAGTCCATGAAAGCTGAACTTGATTAGAATAAAGCATTGATTTGATGCAGCAGCCTTATGAGGCAGAACAGGCTGGATTAGTATGTGTACAAGTCCCCAGCTCAGATGTGGGAAATTATGTTTCCACATCGACCCTGTGCTCCGTGGGAAGAAGGGTCTCCACATGCTGAGTAGAGTCTGGTTGCTCCATTGGGTCGATGCCAGCTGCCTTTTTGTTCCTCCCCACCTCTGGCTTATCTGCTAACGCCCGTTGGAGAATCACTCTGAGAGGTTCCTTCAGCCTTTTCTTTCTGAGGCTCCCCACAAAGAAATAAATGATAGGGTTGGCGCTGCTGTTTATAATGAGGAACGAGGAAATTAAATAGGAGGTGGTGACAAACATTTTGAAATCTGTTATGAGGGGTGCCACGCTCAGGGGTAGGGCCCAGAGCAGGAACATGGTGGCCGAGATCTGCACCAACGCATAGACCCTGGTGGCCTTTCGCTGCTGGGAGCAGCACAGGAATCTAATGAGTAGAGTCAGACTGGACACACACATCACAAGTGAAAGGGTAGCATGGAAGAGCCCAGAAAGCTTTAGAAATATGACACATGCCTTTACATGTTTCCAGTAAGTTAGGAAAAGTGATTTTACTATGTTGATGCAAAAAGGCAGGCCCCAGATGAGGGTGCAGACAACATTAGATGTGTATTTTGGGCGGTGGCATCTGTACCAGATGGGGAAGAGGACACACACACACCGCTCTGTGCTGATGGCCACCAGGAGACAGAGACACACCTCAAAGGAGAAGGGAGACAATATGGCCAGGAAATCAGGGATAAAAAACACGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74465804 1515 + 122973662 ATGAAGAATTAAATGGTATTAAGTTGGAGAGAGGATGAGGTGAATTTGTTTTCTTCAAAGTGAAAGGTTTGGGTGTAAATTCTAACCTA--------------------GTGAGGAGGGATTATGTTATCCAATGTAATGTTTTTGTACATTTATTCAACACACTGCAACATATTCATCATCCTTACTAAATAATTATTACACATGTTGT-AAATAAAATCCAAGGAGTCCTGTATATTCATAAGGTTGAttaatcctcacaccaaccatgcatattaaataccaaatttatcctcctcttgcataagatgaaacagagttacagagagttatttgcccacaataacatgctttgaatgggagagccaaagtgtggacaaaggcaatctgggtccaaaaccctgactcttaactcttgtgtgatGATGCCTCTT--------------GGTAGTTCAGATAAGCTCAAGCTCTATCTAAGGAGGAGATAGGAAAAGGGAGGAAAATCTGTGGCTGGATTTGGAGGATGCTCCAGGATAATGATTGAGAATAATGCATGGCCTTTTGTATGGTCTTTATTTGGGATTCCACAGGTACCAGGAAAGTCTCACTGGGTCCCATTCCCCTCACCGTTGGAACTGGAGCGCATTCAAACTGGGCTTACTGCCTAGAAAGGAAGTTAATGTCTCTTCCAACCACAAACAGCAAGGAGTTGTTCTGAAAGTCCATGAAAGCTGAACTTGATTAGAATAAAGCATTGATTTGATGCAGCAGCCTTATGAGGCAGAACAGGCTGGGTTACTATGTGTACAAGTCCTCAGCTCAGATGTGGGAAATTAT-TTTCCACATCGACCCTGTGCTCCGTGGGAAGAAGGTTCTCCACGTGCTGAGTAGAGTCTGGTTGCTCCATCGGGTCAATGCCAGCTGCCTTTTTGTTCCTCCCCACCTCTGGCTTATCTGCTAACGCCCGTTGGAGAATCACTCTGAGAGGTTCCTTCAGCCTTTTCTTTCTGGGGCTCCCCACAAATAAATAAATGATAGGGTTGGTGCTGCTGTTTATAATGAGGAACAAGGAAATTAAATAGGAGGTGGTGACCAACATTTTGAAATCTGTTATGAGGGGTGCCACGCTCAGGGGTAGGGCCCAGAGCAGGAACATGGTGGCTGAGATCTGCACCACCGCATAGACCCTGGTGGCCTTTCGCTGCTGGGAGCAGCACAGGAGTCTAATGAGTAGAGTCAGACTGGACACACACATCACAAGTAAAAGGATACCATGGAAGAGCCAAGAAAGCTTTAGAAATATGACACATGCCTTTACATGTTTCCAGTAAGTTAGGAAAAGTGATTTTACTATGTTGATGCAAAAAGGCAGGCCCCAGATGAGGGTGCAGACAACATTAGATGTGTATTTTGGGCGGTGGCATCTGTACCAGATGGGGAAGAGGACACACATACACCACTCTGTGCTGATGGCCACCAGGAGACAGAGACACACCTCAAAGGAGAAGGGAGACAATATGGCCAGGAAATGAGGGATAAAAAACATGA
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            51593 1525 -    242197 ATGGCAAGTTAAATGGTATTAAGTTGGAGAAGAGATGAGGTAAATTTATTTTCTTCAAAGTCAAAAGTTTGGTTGT-AATTCTAACCCA--------------------GTGAGGAGGGATTACATTATACAACTTAATGTTTTTGTACATTTATTTAACACACTGCAACA----CATCATCCTTACTAAATAATTATTACACATGTTGCAAAATAAAATCCAGtgagtcctatatattcataaggttaattaatcctcacaccaaccaagtgtattaaatatcaactttatcctcctcttgcataagatgaaacagacttacagagagtaatttgcccacaatgacatgctttgaatgggaaagccaaagtttggacaaaggcaatctgggtgcaaaaccctggctcttacttcttatgtgatGATGGCTCTTGGTGTAGAGAATCAGGTAGT-CAGATAAGTTCAGGCTCTATTTAAGGAGGAGATGGACAAAGGGAGGAAAATTTATGACTGGACTTGGAGGATGCTCCAGGATAATGACAGAGAATAATGCATGGCCTTTTGTATAGACCCTGTTTGGGATTTCACAGATACCAGGAAAGTCTCACTGGGTCCCATTCCCCTTATTGTTGGAACTGGAGCTCATTCAAACAGGGTATACTGCCTAGAAAGGAAGTTAATGTCCCTTCCAACCACAAACAGCAAGGGGTTATTCTGGAAGTCCATGAAAGCTGTACTTGATTAGAACAAAGCATTGATTTCATGCAGCAGTCTTATGAAGCAGAACAGGCTGGGTTACTATGTGTAAAAGTCCCCTACTCAGATGTGGAAAATCATGTTTCCACTTTGACTCGGTGCTCCATGGGAAGAAGATTCTCCACATGCTGAGTAGAGTCCTGCTGCTCCACTGAGTCAATGCCAACTGCCTTTTTGTTCCTCCCCAGCTCTGGCTTATCTGCTAATGCCCGTCGCAGAATCACTCTGAGAGGTTCCTTCAGCCTTTTCTTTCTGAGGCTGCCCACAAAGAAATAAATGATAGGGTTAGCACTGGTATTTATAATGAGGAACAAGGAAATTAAATAGGAAGTGGTGACCAACATTTTGAAATCTGATATGAAGGATGCCATGGTCAGGGGTAGGGCCCAGAGCAGGAACATGGTGGCTGAGATCTGCACGACCACATAGACCCTGGTGGCCTTTCGCTGCTGGGAGCAGCATAGAAGTCTAATGAGCAGAGTCAGACTGGACACACACATCACAAGTAAAAGGATACCATGGAAGACCTCAGAAATCTTTAGAAATATGACACATGCCTCTACATGTTTCCAGTAAATTAGGAAAAGTGAATTTACTATGTTGGTGCAAAGAGACAAGGCCCAGATAAGGCTGCAAACAACAGTAGATGTGTATTTTGGGCGGTGGCATCTGTACCAGATGGGGAAGAGGACGCACACACACCGCTCTATGCTGATGGCCACCAGGAGACAGAGACACACCTCAAAGGAGAAGGGAGACACTATGGCCAGGAAATTAGGGATAAAAAACACAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      66022 1500 +    106389 ATGGCAAGTTAAATGGTATTAAGTTGGAGAAGGGATAAGGTAAATTTATTTTCTTCAAAGTCTAAAGTTTGGTTGT-AATTCTAACCCAACCAAATTGGGTTGCATAATGTAAGGAGGGATTACATTATGCAACTTAATGTATTTGTACATTTATTTAACACACTGCAACA----CATCATCCTTACTAAATAATTATTATACATGTTGT-AAATAAAATCCAAtgagtcctatatattcataaggttaattaatccccataccaaccatgcgtattaaatgccaactttatctttctcttgcataagatgaaacagacttacagagagtaatttgcccacaatgacatgctttgaatgggaaagccaaagtttggacaaaggcaatctgggtgcaaaacgctggctcttaCTTCTTATTTGATGATGGCTCTTGGTGTAGAGAATCAGGTAGTACAGGTAAGTTCAGGCTCTATTTAAGGAGGAGATAGACAAAGAGAGGAAAATTTATGGCTGGACTTGGAGGATGCTCCAGGATAATGACAGAGAATAATGCATGGCCTTTTCTATAGACCCTGTTTGGGATTCCACAGATACCAGGAAAGTCTCACTGGGTCGCATTCCCCTTATTGTTGGAACTGGAGCTCATTCAAACAGGGTATACTGCCTAGAAAGGAAGTTAATGTCTCTTCCAACCACAAACAGCAA-GAGTTGTTCTGAAAGTTCATGAAACCTGTACTTGATTAGAAGAAAACATTGATTTCGTGCAGCAGTCTTATGAGGCAGAACAGGCTGGGTTACTATGTGTAAAAGTCTCCTACTCAGATGTGGAAAATCATGTTTCCACTTTGACTCGGTGCTCCATGGGAAGAAGATTCTCCACATACTGAGTAGAGTCCCGCTGCTCCATAGAGTCAATGCCAACTGCCTTTGTGTTCCTCCCCAGCTCTGGCTTATCTGCTAATGCCCATTGGAGAATCACTCTGAGAGGTTCCTTCAGCCTTTTCTTTCTGAGGCTCCCCACAAAGAAATAAATGATAGGGTTGGCGCTGGTGTTTATAATGAGGAACAAAGAAATTAAATAGGAAGTGGTGACCAACATTTTGAAATCTGATATGAAGGATGCCACGGTCAGCAGTAGGACCCAGAGCAGGAACACGGTGGCTGAGATCTGCAGGACCACATAGACCCTGGTGGCCT------------------ACAGGAGTCTAATGAGCAGAGTCAGACTGG-CACACACATCACAAGTAAAAGGATACCATGGAAGAGCTCAAAAATCTTTAGAAATATGACACATGCCTCTACATGTTTCCAGTAAATTAGGAAAAGTGAATTTACTATGTTGGTGCAAAGAGACAGGGCCCAGATAAGGCTGCAAACAACAGTAGATGTGTACTTTGGGCGGTGGCATCTGTACCAGATGGGG-------------------------TACTGATGGCCACCAGGAGACAGAGGCACACCACAACGGAAAAGGGAGACACTATGGCCAGGAAATTAGGGATAAAAAACACAA
i cebCap1.NW_016108310v1   C 0 I 7102
s aotNan1.NW_018509740v1      94225 1524 -    457564 ATGCCAAGTTAAATGGTATTAAGTTGGAGAAAGGATGAGGTAAATTTATTTTCTTCAAAGTCAAAAGTTTGGTTGT-AATTCTAACCTA--------------------GTGAGGCGGGATTACATTATACAACTTAATGATTTTGTGCATTTATTCAACACACTGCAACA----CACCATCCTTACTAAATAATTATTACACATGTTAT-AAATAAAATCCAGTGAGTCCTatgtattcataaggttaataattcctcaccccaaccatgcatattaaataccaactttatcctcctcttgcataagataaaacagacttacagagagtaatttgcccacaatgacatgctttgaatgagaaaaccaaagtttggacaatggcaatctgggtgcaaaaccttgactcttacttcttatgtgatGATGGCTCTTGGTGTAGAGAATCAGGTAGTACAGATAAGTTCAGGCTCTATTTAAGGAGGAGATAGACAAAGGGAGGAAAATTTATGGCTGGACTTGGAAGATGCTCCAGGATAATGACAGAGAATAATGCATGGCCTTTTGTATGGACCTTGTTTGGGATTCCACAGATACCAGGAAAGTCTCACT-GGTCCCATTCCCCTTATTGTTGGAACTGGAGCTCATTCAAACAGGATATACTGCCTAGAAAAGAAGTTAATGTCTCTTCCAACCACAAACAGCAAGGAATTGTTCTGAAAGTCCATGAAAGCTGTACTTGATTAGAACAAAGCATTGATTTCATGCAGCAGTCTTATAAGGCAGAACAGGCTGGGTTACTATGTGTAAAAGTCCCCTACTCAGGTGTGGAAAATCATGTTTCCACTTTGACTCGGTGCTCCATGGGAAGAAGATTCTCCACATGCTGAGTAGAGTCCCGATGCTCCATCGAGTCGATGCCAACTGCCTTTTTGTTCCTCCCCAGCTCTGACTCATCTGCTAATGCCCGTCGGAGAATCAGTCTGAGAGGTTCCTTCAGCCTTTTCTTTCTGAGGCTCCCCACAAAGAAATAAATGATAGGGTTGGCACTGGTGTTTATAATGAGGAACAAGTAAATTAAATAGGAGGTGGTGACCAACATTTTGAAATCTGATATGAAGGATGCCACGGTCAGGGGTAGGGCCCAGAGCAGGAACATGGTGGCTGAGATCTGCACCACCGCATAGACTCTGGTGGCCTTTCGCTGCTGGGAGCAGCACAGAAGTCTAATGAGCAGAGTCAGACTGGACACACACATCACAAGTAAAAGGATACCATGGAAGAGCCCAAAAATCTTTAGAAATATGACACATGCCTCTACATGTTTCCAATAAATTAGGAAAAGTGAATTTACTATGTTGGTGCAAAGAGACAGGGCCCAGATAAGGGTGCAGACAACAGTAGATGTGTATTTCGGGCGGTGGCATCTGTACCAGATGGGGAAGAGGATGCACACACACCGCTCTGTGCTGATGGCCACCAGGAGACAGAGACACACCTCAAAGGAGAAGGGAGACACTATGGCCAGGAAATTAGGGATAAAAAACACAA
i aotNan1.NW_018509740v1   I 6 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376    1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=1872604.000000
s hg38.chr6_GL000254v2_alt   752855 790 +   4827813 CTCCATGATAAGTTAGCAGAGTCACCTGTAAGAACCCCACTGCCGAGCAGCAAAGATAGATCACGTCAGCAGCGACCAGGTGGAGGATGTATACCATGTAGGGATTCGTGGCCCCACAGCAAAGCAGCCAGAAGACAGTGCCATTCAATAAGACCCCACAGAGGGAGACCAGCACAGCCTTGGGGGCAATGATATTCAAGGGCAGGGCCTGCTGTCCCACTGCCATGCTCATCTGCATATGTATGGTTTCATTCGTCTCATTTTGAAGAAAGACGCCACAGAGCTGAGATACCAGGTTTGGGTTCTGTGCCTCCTGGTCACCACTGTGGAGACAAAGGCTACATGAGAGAGATATCTGTGACTCAGCAAACACTGTCCATCCAGCCCTCTGGCTGAACCAGCAAA-TTTTCCCCCAGACCATGGGGTGCTGGGACCTGAGTGGGCCACAACATCACAGTCAGGAGCAGTGGTCCATCTAGTGGTGTCCTCTGGCCTCAGACCCCTTGCCTCTACATTTTCCTAGGCTGGAATAGAACACCCATTGTTGGGTGTGCTTTTTAGGAACAGCTGAACATTAACTACATATCAGAGTGGATGGGAGTATCTGCTCTGCAAATAGCTCTCCATGAATTTGTGATCTGTTCTCCCTCCCCTAACACATCTCCTGTTGTACAGGATGCCCCAGGCCTACCCACATAGACCCAATATCTTGTTG---TTGGGCACTAATGAGGCACTAAACATTGGGAATGGAGATTTGTGTCTAGTCCAGGTTCTACTCATGAGACACTAG
s panTro5.chr6             29726955 791 + 175400573 CTCCATGATAAGTTAGCAGAGTCACCTGTAAGAACCCCACTGCCGAGCAGCAAAGATAGATCACGTCAGCAGCGACCAGGTGGAGGATGTATACCATGTAGGGATTCGTGGCCCCACAGCAAAGCAGCCAGAAGACAGTGCCATTCAATAAGACCCCACAGAGGGAGACCAGCACAGCCTTGGGGGCAATGATCTTCAAGGGCAGGGCCTGCTGTCCCACTGCCGTGCTCATTTGCATATGTATGGTTTCATTCGTCTCATTTTGAAGAAAGACGCCACAGAGCTGAGATACCAGGTTTGGGTTCTGTGCCTTCTGGTCACCACTGTGGAGACAAAGCCTACATGAGAGAGATATCTGTGACTCAGCAAACACTGTCCATCCAGCCCTCTGGCTGAACCAGCAAACTTTTCCCCCAGACCATGGGGTGCTGGGACCTGAGTGGGCCACAACATCACAGTCAGGAGCAGTGGTCCATCTAGTGGTGTCCTCTGGCATCAGACCCCTTGCCTCTACATTTTCCTAGGCTGGAATAGAACACCCATTGTTGGGTGTCCTTTTTAGGAACAGCTGAACATTAACTACATATCAGAGTGGATGGGAGTATCTGCTCTGCAAATAGCTCTCCATGAATTTGTGATCTGTTCTCCCTCCCCTAACACATCTCCTGTTGTACAGGATGCCCCAGGCCTATCCACATAGACCCAATATCTTGTTG---TTGGGCACTAATGAGGCACTAAGCGTTGGGAATGGAGATTTGTGTCTGGTCCAGGTTCTACTCATGAGACACTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29956667 789 + 173848474 CTCCATGATAAGTTAGCAGAGTCACCTGTAAGAACCCCACTGCCGAGCAGCAAAG--AGATCACGTCAGCAGCGACCAGGTGGAGGATGTATACCATGTAGGGATTCGTGGCCCCACAGCAAAGCAGCCAGAAGACAGTGCCATTCAATAAGACCCCACAGAGGGAGACCAGCACAGCCTTGGGGGCAATGATCTTCAAGGGCAGGGCCTGCTGTCCCACTGCCATGCTCATTTGCATATGTATGGTTTCATTCGTCTCATTTTGAAGAAAGACGCCACAGAGCTGAGATACCAGGTTTGGGTTCTGTGCCTTCTGGTCACCACTGTGGAGACAAAGCCTACATGAGAGAGATATCTGTGACTCAGCAAACACTGTCCATCCAGCCCTCTGGCTGAACCAGCAAACTTTTCCCCCAGACCATGGGGTGCTGGGACCTGAGTGGGCCACAACATCACAGTCAGGAGCAGTGGTCCATCTAGTGGTGTCCTCTGGCATCAGACCCCTTGCCTCTACATTTTCCTAGGCTGGAATAGAACACCCATTGTTGGGTGTCCTTTTTAGGAACAGCTGAACATTAACTACATATCAGAGTGGATGGGAGTATCTGCTCTGCAAATAGCTCTCCGTGAATTTGTGATCTGTTCTCCCTCCCCTAACACATCTCCTGTTGTACAGGATGCCCCAGGCCTATCCACATAGACCCAATATCTTGTTG---TTGGGCACTAATGAGGCACTAAGCGTTGGGAATGGAGATTTGTGTCTGGTCCAGGTTCTACTCATGAGACACTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5766519 791 +   6154872 CTCCATGATAAGTTAGCAGAGTCACCTGTAAGAACCCCACTGCCGAGCAGCAAAGATAGATCACGTCAGCAGCGACCAGGTGGAGGATGTATACCATGTAGGGATTCGTGGCCCCACAGCAAAGCAGCCAGAAGACAGTGCCATTCAATAAGACCCCACAGAGGGAGACCAGCACAGCTGTGGGGGCAATGATCTTCAAGGGCAGGGCCTGCTGTCCCACTGCCATGCTCATTTGCATATGTATGGTTTCATTCGTCTCATTTTGAAGAAAGACGCCACAGAGCTGAGATACCAGGTTTGGTTTCTGTGCCTCCTGGTCACCACTGTGGAGACAAAGGCTACATGAGAGAGATATCTGTGACTCAGCAAACGCTGTCCATCCAGCCCTCTGGCTGAACCAGCAAACTTTTCCCCCAGACCATGGGGTGCTGGGACCTGAGTGGGCCACAACATCACAGTCAGGAGCCGTGGTCCATCCAGTAGTGTCCTCTGGCCTCAGACCCCTTGCCTCTACATTTTCCTAGGCTGGAATAGAACACCCATTGTTGGGTGTCCTTTTTAGGAACAGCTGAACATTAACTACATATCAGAGTGGATGGGAGTATCTGCTCTGCAAATAGCTCTCCATGAATTTGTGATCTGTTCTCCCTCCCCCAACACATCTCCTGTTGTACAGGATACCCCAGGCCTATCCACATAGACCCAATATCTTGTTG---TTGGGCACTAATGAGGCACTAAGCATTGGGAATGGAGATTTGTGTCTGGTCCAGGTTCTACTCATGAGACATTAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74467319 791 + 122973662 CTCCATGATAAGTTAGCAGAGTCACCTGTAAGAACCCCACTGCCAAGCAGCAAAGATAGATCACATCAGCAGCAACCAGGTGGAGGATGTACACCACGTAGGGATTCGTGGCCCCACAGCACAGCAGCCAGAAGACAGTGCCATTCAATAAGACCCCACAGAGGGAGACCAGCACAGCTGTGGAGGCAATGATCTTCAAGGGCAGGGCCTGCTGTCCCACTGCCATGCTCATTTGCATATGTATGGTTTCATTCGTCTCATTTTGAAGAAAGAAGCCACAGAGCTGAGATAGCAGGTTTGGGTTCTGTGCCTTCTGGTCACCACTGTGGAGACAAAGGCTACATGAGAGAGATATTTGTGACTCAGCAAACACTGTCCATCCAGCCCTCTGGCTCAACCAGCAAACTTTTCCCCCAGGCCATAGGGTGCTGGGACCTGAGTGGGCCACAACATCACAGTCAGGAGCAGTGGTCCATCTAGTGGTGTCCTCTGGCCTCAGACCCCTTGCCTCTACATTTTCCTAGGCTGGAATAGAACACCCATTGTTGGGTGTCCTTTTTAGGAACAGCTGAACATTAACTACATATCAGAGTGGTCGGGAGTATTTGCTCTCCAAATAGCTCCCCACGAATTTGTGATCTGTTCTCCCTCCCCCAACACATCTCCTGTTGTACAGGATGCCCCAGGCCTATCCACATAGACCCAATATCTTGTTG---TTGGGCACTAATGAGGCACTAAGCATTGGGAATGGAGATTTGTGTCTGGTCCAGGTTCTACTCATGAGACACTAG
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            53118 791 -    242197 CTCCATGATAAGTTAGCAGAATCATTTGTAAGAACCCCACAGCCGAGCAGCAAAGATAGATCACGCCAGCAGCAGCCAGGTGGAGGATGTACACTGTGTAGGGATTCGTGGGCCCACAGCAAAGCAGCCAGAAAACAGTGCCATTCAATAAGACCCCACAGAGGGAGACCAGCACGGCTGTGGGGGCAATGATCTTCAAGGGCAGGGCCTGCTGCCCCACTGCCGTGCTCATTAGCATATGTGCGATTTTATTCTTCTCATTTTGAAGGAAGACTCCACAGAGCTGGGATAGCAGGTCTGGGTTCTGTGCCTCCTGGTCACCACTGTGGAGACAAAGACTGCATGAGAGAGGTATCTGTGA--CACCAAATGCTGTTCATCCATCTCTCTGGCTGAACCGGTAAACTTTTCCCCTAGGCCATGGGGTGCTGGGACCTGGGTGGGCTACAACACCACAGTCAGGGG-AGTGGTCCATCTAGTGGTATCCTTGGGCCTCATACCCCTTGCCTCTACATTTTCCTAAATTGGAATAGAACACCCATTGTTGGGTGTCCTTTTTAGAAACAGCTGAACATTAACTATATATCAGAGTGGATGGGAATATCCACTCTGCAAATAACTCCCCATGAATTTGTGATCTGTTCTCCTTCCCCCAACATATCTCCTGTTGTAGAGGATGCCCCAGGCCTATCCACATAGACCCAATATCTTGTTGTGTTGGGGCACTAATGAGTCACTAAGCATTGAGAATGGAGATTTGTGTCTGATCCAGGTTCTAGTCATGAGACACTAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      74624 792 +    106389 CTCCATGATAAGTTAGCAGAATCTTTTGTAAGAACCTCACAGCTGAGCAGCAAAGATAGATCACACCAGCAGCAGCCAGGTGGAGGCTGTACACTGTGTAGGGATTCGTGGGCCCACAGCAAAGCAGCCAGAAGACAGTGCCATTCAGTAAGACCTCACAGAGGGAGACCAGCACAGCTGTGGGGGCAATGATCTTCAAGGGCATGGCCTGCTGCCCCACTGCCATGCTCATTAGCATATGTGTGATTTTATTAGTCTCATTTTGAAGGAAGACTCCACAGAGCTAGGATAGCAGATCTGGGTTCTGTGCCTCCTGGTCACCACTGTGGAGACAAAGACTGCATGAGAGAGATATCTGTGATTCAGCAAATGCTGTCCATCCATCTCTCTGGCTGAACCAGTAAACTTTTCCCCCAGGCCATGGGGTGCTGGGA-CTGGGTAGGCCACAACACCACAGACAGGGG-TGTGGTCCAACTAGTGGTGTCCTTGGGCCTCAGGCCCCTTGCCTCTACATTTTCCTAAATTGGAATAGAACACCCATTGTTGGGTTTCCTTTTTAGAAACAGCTGAACATTAACTATATATCAGAGTGGACGAGAATATCTGCTCTGCAAATAACTCCCCATGAATTTGTGATCTGTTCTCCTTCCCCCAATACATCTCCTGTTGTAGAGGATGCCCCAGGCATATCCACATAGACCCAATATCTTGTTGTGTTGGGGCATTAATGAGTCACTAAGCACTGAGAATGGAGATTTGTGTCTGATCCAGGGTCTACTCATGAGACACTAG
i cebCap1.NW_016108310v1   I 7102 C 0
s aotNan1.NW_018509740v1      95749 793 -    457564 CTCCATGATAAGTTAGCAGAATCATTTGTAAGAACCCCACAGCCGAGCAGCAAAGATAGATCACACCAGCAGCAGCCAGGTGGAGGATGTACACTGTGTAGGGATTTGTGGACCCACAGCAAAGCAGCCAGAAAACAGTGCCATTCAAGAAGACCCCACAGAGGGAGACCAGCACAGCTGTGGGGGCAATGATCTTCAAGGGCAGGGCCTGCCGCCCCACTGACATGTTCATTAGCATATGTGCGATTTTATTCGTCTCATTTTGAAGGAAGACGCCACAGAACTGGGATAGCAGGTCTGGGTTCTGTGCCTCCTGGTCACCACTGTGGAGACAAAGACTGCATGAGAGAGATATCTGTGACTCAGCAAATGCTGTCCAACCATCTCTCTGGCTGAACCAGTAAACTTTTCCCCCAGGCCATGGGGTGCTGGGACCTGAGTGGGCCACAACACCACAGTCAGGGG-AGTGGTCCATCTAGTGGTGTCCTTGGGCCTCAGACCCCTTGCCTCTAAATTTTCCTAAATTGGAATAGAACACCCATTACTGGGTGTCCTTTTTAGAAACAGCTGAACATTAACTATATATCAGAGTGGACGGGAATATCCGCTCTGCAAATAACTCCCCATGAATTTGTGATCTGTTCTCCTTCCCCCAACACATCTCCTGTTGTAGAGGATACCCCAGGCCTCTCCACATAGACCCAATATCTTGTTGTGTTGGGGCATTAATGAGTCACTAAGCATTGAGAATGGAGATTTGTGTCTGATCCAGGCTCTACTCATGAGACACTAG
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=12825.000000
s hg38.chr6_GL000254v2_alt   753645 9 +   4827813 TGTCTCATC
s panTro5.chr6             29727746 9 + 175400573 TGTCTCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29957456 9 + 173848474 TGTCTCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5767310 9 +   6154872 TGTCTCATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74468110 9 + 122973662 TGTCTCATC
i nomLeu3.chr1a            C 0 C 0
s cebCap1.NW_016108310v1      75416 9 +    106389 TGTCTCATC
i cebCap1.NW_016108310v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            53909 0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1      96542 0 -    457564 C
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376 1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=266686.000000
s hg38.chr6_GL000254v2_alt   753654 303 +   4827813 TC--------------------------------ttttttttttttttttttgagttggagtctcactctgtcacccaggctggagtgcagtggcgcgatctcagctcactggaacctccaccttccaggttcaagcgattctcctgcctcggcctcctgactagctggaactacaggcacccaccaccatgcccggctaatttttttgtatttttagtagagatggggtttcaccatattggccaggctggtctcaaactcctgaccttgtgatccacctgccttgacctcccaaagtgctgggattacaagcgtgagccacggcacctggccA
s panTro5.chr6             29727755 302 + 175400573 TC---------------------------------tttttttttttttttttgagatggagtctcactctgtcacccaggctggagtgcagtggcgcgatctcagctcactggaacctccaccttccaggtttaagcgattctcctgcctcagcctcttgactagctggaactacaggcacccaccaccatgcccggctaatttttttgtatttttagtagagatggggtttcaccatattggccaggctggtctcaaactcctgaccttgtgatccacctaccttgacctcccaaagtgctgggattacaagcgtgagccacggcacctggccA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29957465 301 + 173848474 TC---------------------------------ttttttttttttttgtt-agatggagtctcactctgtcacccaggctggagtgcagtggcgcgatctcagctcactggaacctccaccttccaggtttaagcgattctcctgcctcagcctcttgactagctggaactacaggcacccaccaccatgcccggctaatttttttgtatttttagtagagatggggtttcaccatattggccaggctggtctcaaactcctgaccttgtgatccacctaccttgacctcccaaagtgctgggattacaagcttgagccacggcacctggccA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5767319 309 +   6154872 TC--------------------------ttttttttttttttttttttttttgagatggagtctcactctgtcacccaggctggagtgcagtggcgcgatctcagctcactggaacctccaccttccaggttcaagcgattctcctgcctcagcctcctgactagctggaactacaggcacccaccaccatgcccggctaatttttttgtatttttagtagagatggggtttcaccatattggccaggctggtcttaaactcctgaccttgtgatccacctgccttgacctcccaaagtgctgggattacaagcatgagccacggcacctggccA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74468119 335 + 122973662 TCTCTTTTTTTTATTTTAGTGTCTCATATCttttttttttttttttttttttgagacagagtctcactctgtcacccaggctggagtgcagtggcacgatctcagctcactggaacctccaccttccaggttcaagcgattctcctgcctcagcctcctgactagctggaactacaggcacccaccaccacacccggctaattattttgtatttttagtagagatggggtttcaccatattggccaggctggtctcaaactcctgactttgtgatctacccgccttgacctcccaaagcgctgggattacaagcgtgagccacggcacccagccA
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            53909   0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1      96542   0 -    457564 C
e cebCap1.NW_016108310v1      75425   0 +    106389 C
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=13944.000000
s hg38.chr6_GL000254v2_alt   753957 7 +   4827813 TGTCTCA
s panTro5.chr6             29728057 7 + 175400573 TGTCTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29957766 7 + 173848474 TGTCTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5767628 7 +   6154872 TGTCTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74468454 7 + 122973662 TGTCTCA
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            53909 7 -    242197 TGTCTCA
i saiBol1.JH378357         C 0 C 0
s aotNan1.NW_018509740v1      96542 7 -    457564 TGTCTCA
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e cebCap1.NW_016108310v1      75425 0 +    106389 C
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376 1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=1260042.000000
s hg38.chr6_GL000254v2_alt   753964 593 +   4827813 TCTCTTTCAAACCCAGTCCT-GGGCATCCTTGGGTAGCCATACAGGATGCAGCAGTGCCACAGTATGGCATTTCCCTGGGCTCAGACAGGTACAAGGGAGCACTGAGATTTCCAAGGCAGGCATTTCACAGCAGTTGGCACCAAAGAAGTCCTTTCTATGGCTGGCAGGACTTGACCTGGAAAATAAGGAAATCTGCGTTTCTCCAGGGGCGTGAGTCTCAGGCAGTGTCTGTGTGGGCATCATCGACTGCTATGCTCCAAATGTCAGCTGAGGAGAAGGAAATGAACAGACTTAGGGTGCAACAAATACAAAAGAGGCCTAAGAATATTAATATAAATATTAATATAG--AGAATAGTATTTTAATGCTATGTAAATATATTAATATAGAGAGACTAGCATATTAATACTATGTAAATAT--TTATATATTAATAAATTATATTAATATAACATTGCTATATTAACATGTTATTAATATTGATG---TTAATATATTCACATTATATATTTATGTTAATATATTAATTATATTAATATAACATATTCTCAATTATGCTATCAAGGATATTGATAATTAATATTGACA----TTAGTTTATTAAT
s panTro5.chr6             29728064 593 + 175400573 TCTCTTTCAAACCCAGTCCT-GGGCATCCTTGGGTAGCCATACAGGATGCAGCAGTGCCACAGTATGGCGTTTCCCTGGGCTCAGACAGGTACAAGGGAGCACTGAGATTTCCAAGGCAGGCATTTCACAGCAGTTGGCACCAAAGAAGTCCTTTCTATGGCTGGCAGGACTTGACCTGGAAAATAAGGAAATCTGCTTTTCTCCAGGGGCATGAGTCTCAGGCAGTGTCTGTGTGGGCATCATCGACTGCTATGCTCCAAATGTCAGCTGAGGAGAAGGAAATGAACAGACTTAGGGTGCAACAAATACAAAAGAGGCCTAAGAATATTAACATAAATATTAATATAG--AGAATAGCATTTTAATGCTATGTAAATATATTAATATAGAGAGACTAGCATATTAATACTATGTAAATAT--TTATATATTAATAAATTATATTAATATAACATTGCTATATTAACATGTTATTAATATTGATG---TTAATATATTCACATTATATATTTATGTTAATATATTAATTATATTAATATAACATATTCTCAATTGTGCTATCAAGGATATTGATAATTAATATTGACA----TTAGTTTATTAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29957773 593 + 173848474 TCTCTTTCAAACCCAGTCCT-GGGCATCCTTGGGTAGCCATACAGGATGCAGCAGTGCCACAGTATGGCATTTCCCTGGGCTCAGACAGGTACAAGGGAGCACTGAGATTTCCAAGGCAGGCATTTCACAGCAGTTGGCACCAAAGAAGTCCTTTCTATGGCTGGCAGgacttgacctggaaaataaggaaatctgcttttctccaggggcgtgagtctcaggcAGTGTCTGTGTGGGCATCATCGACTGCTATGCTCCAAATGTCAGCTGAGGAGAAGGAAATGAACAGACTTAGGGTGCAACAAATACAAAGGAGGCCTAAGAATATTAACATAAATATTAATATAG--AGAATAGCATTTTAATGCTATGTAAATATATTAATATAGAGAGACTAGCATATTAATACTATGTAAATAT--TTATATATTAATAAATTATATTAATATAACATTGCTATATTAACATGTTATTAATATTGATG---TTAATATATTCACATTATATATTTATGTTAATATATTAATTATATTAATATAACATATTCTCAATTGTGCTATCAAGGATATTGATAATTAATATTGACA----TTAGTTTATTAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5767635 593 +   6154872 TCTCTTTCAAACCCAGTCCT-GGGCATCCTTGGGTAGCCATACAGGATGCAGCAGTGCCACAGTATGGCGCTTCCCTGGGCTCAGACAGGTACAAGGGAGCACTGAGATTTCCAAGGCAGGCATTTCACAGCAGTTGGCACCAAAGAAGTCCTTTCTATGGCTGGCAGGACTTGACCTGGAAAATAAGGAAATCTGCGTTTCTCCAAGGGCGTGAGTCTCAGGCAGTGTCTGTGTGGGCATCATCGACTGCTATGCTCCAAATGTCAGCTGAGGAGAAGGAAATGAACAGACTTAAGGTGCAACAAATACAAAAGAGGCCTAAGAATATTAATATAAATATTAATATAG--AGAATAGCATTTTAATACTATGTAAATATATTAATATAGAGAGACTAGCATATTAATACTATGTAAATAT--TTATATATTAATAAATTATATTAATATAACATTGCTATATTAACATGTTATTAATATTGATG---TTAATATATTCACATTATATATTTATGTTAATATATTAATTATATTAATATAATATATTCTCAATTATGCTATCAAGGATATTAATAATTAATATTGACA----TTAGTTTACTAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74468461 554 + 122973662 TCTCTTTCAAACCCAGTCCTGGGGCATCCTTGGGTAGCCATACAGGAGGCAGCAGTGCCACAGTATGGCACTTCCCTGGGCTCAGACAGGTACAAGGGAGCACTGAGATTTCCAAGGCAGGCATTTCACAGCAGTTGGCACCAAAGAAGTCCTTTCTATGGCTGGCAGGACTTGACCTGGAAAATAAGGAAATCTGCCTTTCTCCAGGAGCATGAGGCTCAGGCAGTGTCTGTGTGGGCATCATCGACTGCTGTGCTCCAAATGTCAGTTGAGGAGAAGGAAATGAACAGACTTAGGGGGCAACAAATACAAAAGAGGCCTAAGAATATTAATATCAATATTAATATAG--AGAATAGCATTTTAATACTATGTAAATATA------------------------------------------TTATATATTAATAAATTATATTAATATAATATTGCTATATTAACATGTTATTAATATTGATG---TTAATATATTCGCATTATATATTTATGTTAATATATTAATTATATTAATATAACATATTCTCAATAATGCTATCAATGATATTGATAATTAATATTGACA----TTATTTAGTTTAT
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            53916 520 -    242197 TCTCTTTCAAACCCAGGCCTGGGGCATCCTTGGGCAGCCATACAAGATGCAGCAATGCCACAGTATGGCTCCACCCTGGGTTCAAACAGGTACAGGGGGGCACCAAGATTTCCAAGACAGGCATTTCACAGCAGTTGGCACCAAAGAAGTTCTTTCTATGGCTGGCAGGACTTGACCTGGAAAATAAGGAAATCTGCCTTTCTCCAGGGATATGAGGCTCAGGCAGTGTCTGTGTGAG---CATCGACTGCTGTGCTCCAAATGTCAGCTGAAGAGAAGAAAATGAACAGACTTAGGGTGCAACAAATACAAAAGAGGCCTAAGAATATTAATAGAAATATTAATATAGAAAGAATAGCATTTTAATGCAATGTAAATATATTAATATAG----ACTAGCATCTTAATACCATGtaaatatatttgtatattaataaattatattaacataatattGCTATC----------------------------------------------------------------------TTAACATGATATATTCTCAATTATGCTATC--AGATATTGATAATTAACATT------ATTTAGCTTATTAAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      75425 594 +    106389 TCTCTTTCAAACCCAGGCCTGGGGCATCCTTGGGCAGCCATACCAGATGCAGCAGTGCCACAGTATGGCTCCGCCCTGGGCTCAAACAGGTACAGGGGAGCACCGAGATTTCCAAGACAGGCATTTCACAGCAGTTGGCACCAAAGAAGTCCTTTCTATGGCTGGCAGGACTTGACCTGGAAAATAAGGAAATCTGCCTTTCTCCAGGGACGTGAGGCTCAGGCAGTGTCTGTGTGAGCATCATCGACTGCTGTGCTCCAAATGTCAGCTGAAGAGAAGAAAATGAACAGACTTAGGGTGCAACAAATACAAAAGAGGCCTAAGaatattaatataaatattaatatagaaagaatagccttttaatattatgtaaatatattaatatag--aaactagcatattaataccatgtaaatatatttatatattaataaattatattaatataatatTGCTATCTTATCATGTTACTAATATTGATGTCATTAATATAGTCATATTGTATATTTATGTTAA---------TATATTAATATGATATATTCTCAATTATGCTATTAAAGATATTGATAATTAACATTAACATCATTTAGCTTATTAAT
i cebCap1.NW_016108310v1   C 0 I 15
s aotNan1.NW_018509740v1      96549 595 -    457564 TCTCTTTCAAACCCAAGCCTGGGGCATCCTTGGGCAGCCATACAAGATGCAGCAATGCCAGAGTAAGGTTCCGCCCTGGGCTCAAACAGGTGCAGGGGAGCACTGAGATTTCCAAGACAGGCATTTCACAGCAGTTGGCACCAAAGAAGTCCTTTCTATGGATGGCAGGACTTGACCTGGAAAATAAGGAAATCTCCCTTTCTCCGCGGACGTGAGGCTCAGGCAGTGTCTGTGTGAGCATCATCTACTGCTGTGCTCCAAATGTCAGCTGAAGAGAAGAAAATGAACAGACTTAGGGTGCAACAAATACAAAAGAGGCCTAAGaatattaatataaatattaatatagaaagaatagcattttaatgctatgtaaatatattaatatag--agactagcatattaatactatgtaaatata----tatattaataaattatattaatataatattgttatcttaacatgttactaatattgatgtcattaatatattcacattatatatttatgttaacat----cttatattaatatgatatattctcaattatgctattaaagatattgataattaacattaacattatttagcttattaat
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=-6248.000000
s hg38.chr6_GL000254v2_alt   754557  6 +   4827813 ---------------ATTTAT
s panTro5.chr6             29728657  6 + 175400573 ---------------ATTTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29958366  6 + 173848474 ---------------ATTTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5768228  6 +   6154872 ---------------ATCTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74469015  6 + 122973662 ---------------TAATAT
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            54436  3 -    242197 --------------AAT----
i saiBol1.JH378357         C 0 I 12
s aotNan1.NW_018509740v1      97144 17 -    457564 aatgtgtcattaacaat----
i aotNan1.NW_018509740v1   C 0 I 2
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e cebCap1.NW_016108310v1      76019 15 +    106389 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376  1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=91185.000000
s hg38.chr6_GL000254v2_alt   754563 39 +   4827813 GTATTTATTTATTGCTGTTGTCCCAGGTTTATTGAAAAT
s panTro5.chr6             29728663 39 + 175400573 GTATTTATTTATTGCTGTTGTCCCAGGTTTATTGAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29958372 39 + 173848474 GTATTTATTTATTGCTGTTGTCCCAGGTTTATTGAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5768234 39 +   6154872 GTATTTATTTACTGCTGTTGTCCCAGGTTTACTGAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74469021 39 + 122973662 GTATTTATTTATTGCTGTTGTCCCAGGTTTATTGAAAAT
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            54451 39 -    242197 ATATTTATTTATTGCTGTTGTCCCAGGCATATTGAAAAT
i saiBol1.JH378357         I 12 I 325
s cebCap1.NW_016108310v1      76034 39 +    106389 ATATTTATTTATTGCTGTTGTCCCAGTTACATTGAAAAT
i cebCap1.NW_016108310v1   I 15 C 0
s aotNan1.NW_018509740v1      97163 39 -    457564 ttatttaTTTATTGCTGTTGTCCCAGGTATATTGAAAAT
i aotNan1.NW_018509740v1   I 2 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376  1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=127267.000000
s hg38.chr6_GL000254v2_alt   754602 57 +   4827813 AAAATCCAGTGACTGCTGTATATTACAGCATTGGAGAAAGAGTCAAACAGCTCCACG
s panTro5.chr6             29728702 57 + 175400573 AAAATCCAGTGACTGCTGTATATTACAGCATTGGAGAAAGAGTCAAACAGCTCCACG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29958411 57 + 173848474 AAAATCCAGTGACTGCTGTATATTACAGCATTGGAGAAAGAGTCAAACAGCTCCACG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5768273 57 +   6154872 AAAATCCAGTGACTGCTGTATATTACAGCATTGGAGAAAGAGTCAAACAGCTCCACG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74469060 57 + 122973662 AAAATCCAGTGAGTGCTGTATATTACAGCATTGGAGAAAGATTCAAACAGCTCCACA
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            54815 57 -    242197 AAAATCCCGTGAGTAATGTATTTTACAGCATTGTAGAAAGATTCAAACAGCTTCACG
i saiBol1.JH378357         I 325 C 0
s cebCap1.NW_016108310v1      76073 57 +    106389 AAAGTCCAGTGAGTATTGTATTTTACAGCATTGCAGAAAGATTCAAACAGCTTCACA
i cebCap1.NW_016108310v1   C 0 C 0
s aotNan1.NW_018509740v1      97202 57 -    457564 AAAATCCAGTGAGTACTGTATTTTACAGCATTGCAGAAAGATTCAAACAGCTTCACG
i aotNan1.NW_018509740v1   C 0 I 3
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376  1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=197312.000000
s hg38.chr6_GL000254v2_alt   754659 107 +   4827813 AGGCATTTTGAAATTCATCCCAACTGTAGGCCGAGTGACCTGCAGGTTGGACAGGCTGCCAAAGTCCAAAAGCTTCAGCATTTCCTTAGTGTCAGGATCTACTTCGA
s panTro5.chr6             29728759 107 + 175400573 AGGCATTTTGAAATTCATCCCAACTGTAGGCCGAGTGACCTGCAGGTTGGACAGGCTGCCAAAGTCCAAAAGCTTCAGCATTTCCTTAGTGTCAGGATCTACTTCGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29958468 107 + 173848474 AGGCATTTTGAAATTCATCCCAACTGTAGGCCGAGTGACCTGCAGGTTGGACAGGCTGCCAAAGTCCAAAAGCTTCAGCATTTCCTTAGTGTCAGGATCTACTTCGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5768330 107 +   6154872 AGGCATTTTGAAATTCATCCCAACTGTAGGCCGAGTGACCTGCAGGTTGGACAGGCTGCCAAAGTCCAAAAGCTTCAGCATTTCCTTAGTGTCAGGATCTACTTCGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74469117 107 + 122973662 AGGCGTTTTGAAATTCATCCCAACTGTAGGCCAAGTGACCTGCAGGTTGGACAGGCTGCCAAAGTCCAAAAGCTTCAGCATTTCCTTAGTGTCAGGATCTACTTCAA
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            54872 107 -    242197 AGGTGTTTTGAAATTCATCCCTACTGTAAGCCGAGTGTCCTGCAGGTTGGGCAGGCTGCCAAAGTCCAAAAGCTTCAACATTTCCTTAGTGTCAGGATCTACTTCAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      76130 107 +    106389 AGGTGTTTTGAAATTCATCCCTACCGTAAGCTGAGTGTCCTGCAGGTTGGACAGGCTGCCAATGTCCAAAAGCTTCAACATTTCCTTAGTGTCAGGATCTACTTCAG
i cebCap1.NW_016108310v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1      97259   3 -    457564 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=816661.000000
s hg38.chr6_GL000254v2_alt   754766 356 +   4827813 TGATCTCCTGATCCAGGGCTGAGAC-CTTGGGGACATAATTGTCCCTCCTTTCTTTCTCCTCCTCCTGTAGCTTGATGGAGATACCTCTCACTGGACCTCTCTGAATCTGGTTCGTCAGATGCGTGACGCAGCCTGCTCTCCTGTTGTGGAGCTTCTTGCTGAGGATAATGGGGATCTC--CTCACACACACTTGTTTGTGTGGAAGTCATTGCCCAGGCACATGTAGTACTTTTCTACGATGACCTAGGCCACCTTCGTCACAGTCTTGATGCCAACACGACCCATGTTGGTGGGTCTTTGGTCATTAATATTAATTGATATTAACATTATTCAGTTTATTAATAATGTATCATTAAT
s panTro5.chr6             29728866 356 + 175400573 TGATCTCCTGATCCAGGGCTGAGAC-CTTGGGGACATAATTGTCCCTCCTTTCTTTCTCCTCCTCCTGTAGCTTGATGGAGATACCTCTCACTGGACCTCTCTGAATCTGCTTCGTCAGATGTGTGACGCAGCCTGCTCTCCTGTTGTGGAGCTTCTTGCTGAGGATAATGGGTATCTC--CTCACACACACTTGTTTGTGTGGAAGTCATTGCCCAGGCACATGTAGTACTTTTCTACGATGACCTAGGCCACCTTCGTCACAGTCTTGATGCCAACACGACCCATGTTGGTGGGTCTTTGGTCATTAATATTAATTGAGATTAACATTATTCAGTTTATTAATAAAGTATCATTAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29958575 356 + 173848474 TGATCTCCTGATCCAGGGCTGAGAC-CTTGGGGACATAATTGTCCCTCCTTTCTTTCTCCTCCTCCTGTAGCTTGATGGAGATACCTCTCACTGGACCTCTCTGAATCTGCTTCGTCAGATGTGTGACGCAGCCTGCTCTCCTGTTGTGGAGCTTCTTGCTGAGGATAATGGGGATCTC--CTCACACACACTTGTTTGTGTGGAAGTCATTGCCCAGGCACATGTAGTACTTTTCTACGATGACCTAGGCCACCTTCGTCACAGTCTTGATGCCAACACGACCCATGTTGGTGGGTCTTTGGTCATTAATATTAATTGAGATTAACATTATTCAGTTTATTAATAAAGTATCATTAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5768437 354 +   6154872 TGATCTCCTGATCCAGGGCTGAGAC-CTTGGGGACATAATTGTCCCTCCTTTCTT--TCCTCCTCCTGTAGCTTGACGGAGATACCTCTCACTGGACCTCTCTGAATCTGCTTCGTCAGATGCGTGACGCAGCCTGCTCTCCTCTTGTGGAGCTTCTTGCTGAGGATAATGGGGATCTC--CTCACACACACTTGTTTGTGTGGAAGTCATTGCCCGGGCACATGTAGTACTTTTCTACGATGACCTAGGCCACCTTCGTCACAGTCTTGATGCCAACACGACCCATGTTGTTGGGTCTTTGGTCATTAATATTAATTGATATTAACATTATTCAGTTTATTAATAATGAATCATTAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74469224 358 + 122973662 TGATCTCCTGATCCAGGGCTGAGAC-CTTGGGGACGTAATTGTCCCTCCTTTCTTTCTCCTCCTCCTGTAGCTTGATGGAGATACCTCTCACTGGACCTCTCTGAACCTGCTTCGTCAGATGTGTGGCATAGCCTGCTCTCCTGTTGTGGAGCTTCTTGCTGAGGATAATGGGGATCTCCACACACACACACTTGTTTGTGTGGAAGTCATTGCCCAGGCACATGTAGTACTTTTCTACGATGACCTAGGCCGTCTTCATCACAGTCTTGATGCCAACACGACCCATGCTGGTGGGTCTTTGGTCATTAATATTAATCGATATTAACATTATTCAGTTTATTAATAAGGTATCATTAGT
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            54979 353 -    242197 TGATCTCATGATCCAGGGCTGAGAC-CTTCGGAACATAATTGTCTCTCCTTTCTTTCTCCTACTCCTGCAGCTTTATGGAGATACCTCTCACTAGACCTCTCTGAATCTGCTTTGCCAGATGTGTGACATCGCCTGCTCTCTTGTTGTAGAGCTTCTTGCTGAGGATAACGGCGATCTC--CTCACACACACTTGATAGTGTGTAAGTCATTGCCCAGGCACATGTGGTACTTTTCTATGATGACCCGGGCTGCCTTCGTCACAGTTTTGATGCAAACACGACACATGTTGGTGGGTCTTTGGTCATCGATATTAATTGATATTAACGTTATTCAGTTTATTAATAATGTATCATT---
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      76237 357 +    106389 TGATCTCCTGATCCAGGGCTGAGACAATTAGGAAGATAATTGTCTCTCCTTTCTTTCTCCTACTCCTGCAGCTTGATGGAGATACCTCTCACTATATCTCTCTGAATCTGCTTCGCCAGATGTGTGACATTGCCTGCTCTTTTGCTGTGGAGCTTCTTGCTGAGGATAATGGCGATCTC--CTCACACACACTTGTTTGTGTGAAAGTCGTTGCCCAGGCACATGTAGTACTTTTCTATGATGACCTGGGCTGCCTTCATCACAGCTTTGATGTGAACATGACACATGTTGGTGGGTCTTTGGTCATCAATATTAATTGATATTAACATTATTCAGTTTATTAATAATGTATCATTAat
i cebCap1.NW_016108310v1   C 0 I 1089
s aotNan1.NW_018509740v1      97262 354 -    457564 TGATCTCCTGATCCAGGGCTGAGAC-CTTGGAAACATAATTGTCTCTCCTTTCGTTCTCCTATTCCTGCAGCTTGATGGAGATACCTCTCACTAGACCTCTCTGAATCTGCTTCGCCAGATGTGTGACATCGCCTGCTCTCTTGCTGTGGAGCTTCTTGCTGAGGATAATGGTGATCTC--CTCACACACGCTTGTTCATACGGAAGTCATTGCCCAGGCACATGTAGTACTTTTCTATGATGGCCTGGGCTGCCTTCAT--CAGTTTTGATGTGAACACGACCCATGTTGGTGGGTCTTTGGTCATCAATACCAATTGATATTAACATTATTCAGTTTATTAATAACATATCATTAAT
i aotNan1.NW_018509740v1   I 3 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=470581.000000
s hg38.chr6_GL000254v2_alt   755122 233 +   4827813 AATATTTATACAATATTAGTAAAATAGTTTATCAGTACATTTTAATG---TTGATATGCTTTCAATATTAAGATATTAATGTATTATTGATTACATGTGAATATATTAGCATATTAACAGTATATATTAATATATTTGGTATACTATATTAATATTATTTATATGATATGAATATGCTATTAGTGGCATATTAATAACAATATATTAATAAT-----ATAATGTGATTAATAGTTGTATGT
s panTro5.chr6             29729222 233 + 175400573 AATATTTATACAATATTAGTAAAATAGTTTATCAGTACATTTTAATG---TTGGTATGCTTTCAATATTAAGATATTAATGTATTATTGATTACATGTGAATATATTAGCATATTAACAGTATATATTAATATATTTGGTATACTATATTAATATTATTTATATGATATGAATATGCTATTAGTGGCATATTAATAACAATATATTAATAAT-----ATAATGTGATTAATAGTTGTATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29958931 233 + 173848474 AATATTTATACAATATTAGTAAAATAGTTTATCAGTACGTTTTAATG---TTGATATGCTTTCAATATTAAGATATTAATGTATTATTGATTACATGTGAATATATTAGCATATTAACAGTATATATTAATATATTTGGTATACTATATTAATATTATTTATATGATATGAATATGCTATTAGTGGCATATTAATAACAATATATTAATAAT-----ATAATGTGATTAATAGTTGTATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5768791 233 +   6154872 AATATTTATACAATATTAGTAAAATAGTTTACCAGTACATTTTAATG---TTGATATGCTTTCAATATTAAGATATTAATGTATTATTAATTACATGTGAATATATTAGCATATTAACAGCATATATTAATATGTTTAGTATGCTATATTAATATTATTTATATGATATGAATATGCTATTAGTGGCATATTAATAACAATATATTAATAAT-----ATAATGTGATTAATAGTTGTATGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74469582 229 + 122973662 AA----TATACAATATTAGTAAAATAGTTTATCAGTACATTTTAATG---TTAATATGCTTTCAATATAAAGATATTAATGTATTATTGATTACATGTGAATATATTAGTATATTAACAGTATATATTAATATATTTGGTATACTATATTAATATTATTTATATGATATGAATATGCTATTAGTGGCATGTTAATAACAATATATTAATAAT-----ATAATATGATTAATAGTTGTATGT
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            55332 226 -    242197 AATATTTATACAATAATAGTAAAATAGTTCATCAGTACATTTTAATAATGTCAATATGCTTA------TAAGATATTAATTTATTATTGA-TAC--GTGAatatattaatatattaacaacatatattaatatatttggtatact------atattatttatatgatatgaatatgctattaatggtatattaatgacaatatattaataataaatgttattgtgattaatagttgtttgt
i saiBol1.JH378357         C 0 I 7
s cebCap1.NW_016108310v1      77683 226 +    106389 AATATTTATACAAAAATAGTAAAATAGTTCCTCAGTACATTTTAATA--GTCAATATACTTATAATATTAAGATATTAATTTATTATTGA-TACATGTGAATACATTAATATATTAACAATATATATTAATATATTTGGCATACT------ATATTATTTATATGATATGAATATGCTATTATTGGTATATTAATAACAATATATTAATAA------ATATTGTGATTAATAGTTGTATGT
i cebCap1.NW_016108310v1   I 1089 I 22
s aotNan1.NW_018509740v1      97616 219 -    457564 ---ATTTAT---ATAATAGTAAAATAGTTCATCAGTACAGTTTAATA---------TGCTTATAATATTAAGATATTAATGTATTATTGA-TACATGTGAATATATTAATATATTAACAATATATATTAATATATTTGGTATACT------GTATTACTTATATGATATGAATATGCTATTAATGGTATATTAATAACAATATACTAATAAGAAATATTATTGTGATTAATAGTTGTATGT
i aotNan1.NW_018509740v1   C 0 I 7
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=10456.000000
s hg38.chr6_GL000254v2_alt   755355 8 +   4827813 GATTATTA
s panTro5.chr6             29729455 8 + 175400573 GATTATTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29959164 8 + 173848474 GATTATTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5769024 8 +   6154872 GATTATTA
i gorGor5.CYUI01015250v1   C 0 I 5
s nomLeu3.chr1a            74469811 8 + 122973662 GATTATTA
i nomLeu3.chr1a            C 0 I 5
s saiBol1.JH378357            55565 8 -    242197 ttttatta
i saiBol1.JH378357         I 7 I 2
s aotNan1.NW_018509740v1      97842 8 -    457564 tttcatta
i aotNan1.NW_018509740v1   I 7 I 7
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e cebCap1.NW_016108310v1      77909 22 +    106389 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376 1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=153898.000000
s hg38.chr6_GL000254v2_alt   755363 68 +   4827813 ATTATTTATGATTATATTATGATTAACAAGTAGTACTATTATATCTTGTTTCTAATGAATAATTATTA
s panTro5.chr6             29729463 68 + 175400573 ATTATTTATGATTATATTATGATTAACAATTAGTACTATTATATCTTGTTTCTAATGAATAATTATTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29959172 68 + 173848474 ATTATTTATGATTATATTATGATTAACAATTAGTACTATTATATCTTGTTTCTAATGAATAATTATTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5769037 68 +   6154872 ATTATTTATGATTATATTATGATTAACAATTAGTACTATTATATCTTGTTTCTAATGAATAATTATTG
i gorGor5.CYUI01015250v1   I 5 C 0
s nomLeu3.chr1a            74469824 67 + 122973662 ATTATTTATGATTATATTATGATTAACAATTAGTACTATTA-ATCTTGTTTATAATGAATAATTATTA
i nomLeu3.chr1a            I 5 C 0
s saiBol1.JH378357            55575 68 -    242197 attatttatgattatattataattaacaataagtactgttatatcttgtttataatgaataattatta
i saiBol1.JH378357         I 2 I 3
s cebCap1.NW_016108310v1      77931 68 +    106389 ATTATTCATGATTATATTATTATTAACAATATGTACTGTTATATCTTGTTTACAATGAATAATTATTA
i cebCap1.NW_016108310v1   I 22 I 7624
s aotNan1.NW_018509740v1      97857 68 -    457564 attatttatgattatattatgattaACAATAAGTACTGTTGTATCTTGTTTATAATGAATAATTATCA
i aotNan1.NW_018509740v1   I 7 I 6
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376  1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=72076.000000
s hg38.chr6_GL000254v2_alt   755431 55 +   4827813 TTAA--TATTCAAAAAACTAATAATAATTGTTATTTTTATAGAATCTGGAATTGTGG
s panTro5.chr6             29729531 55 + 175400573 TTAA--TATTCAAAAAACTAATAATAATTGTTATTTTTATAGAAGCTGGAATTGTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29959240 55 + 173848474 TTAA--TATTCAAAAAACTAATAATAATTGTTATTTTTATAGAAGCTGGAATTGTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5769105 55 +   6154872 TTAA--TATTCAAAAAACTAACAATAATTGTTATTTTTATAGAACCTGGAATTGTGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74469891 55 + 122973662 TTAA--TATTCAAAAAACTAATAACAATTATTATTTTTATAGAACCTGGAATTGTGG
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            55646 56 -    242197 ttattatttttaaactacttctaataattattatttttatAGAATCTGGAATACGA-
i saiBol1.JH378357         I 3 C 0
s aotNan1.NW_018509740v1      97931 54 -    457564 TTAT--TTTTTAAACTACTTCTAATAATTATTATTTTTATAGAATCTGGAATGGGA-
i aotNan1.NW_018509740v1   I 6 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e cebCap1.NW_016108310v1      77999 7624 +    106389 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376  1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=1212345.000000
s hg38.chr6_GL000254v2_alt   755486 529 +   4827813 AGCAGACTTCGCAAGGCTTCTCTGACCTCTGCCTCCCGCTCTGGGATCTGTGAAACACACTGGGCTCTTCTTCTAGACCTCCCTTTTTGAAGCTCCTCCAAAGACCGTTTCATCATCTCTACTCAACAGTCTCCTCAGGAAATTGCCTCTTCAGTAGGCAAATGTCACTTGCCACAAACTTATCTTTGGCATGAGGATAAGACAGTG-CTAAGGTAGAACTGTCTGTACCTTCTTTGGGTttacattgtgataactgcaaggagaaaaataaattgggctgagtggatagaaaatgataagggtaatggatgtttcctagtgggataaatgaggggagtttcttagtaggacatggagatctgaatgacctactggagcaaccaggtgacagccagaaggaaagagccacaggcaggctcagcaagttcaccaccctggggcaagTGGCTTCATCTGCTTTGTTAATCTTTGATGCTCCTGTCCAGAGAGGGCCTCTTAAGCAACTTGAGTGCAATAACTATTTTTCTAT
s panTro5.chr6             29729586 529 + 175400573 AGCAGACTTCGCAAGGCTTCTCTGACCTCTGCCTCCAGCTCTGGGATCTGTGAAACACACTGGGCTCTTCTTCTAGACCTCCCTTTTTGAAGCTCCTCCAAAGACCATTTCATCATCTCTACTCAACAGTCTCCTCAGGAAATTGCCTCTTCAGTAGGCAAATGTCACTTGCCACAAACTTATCTTTGGCATGAGGATAAGACAGTG-CTAAGGTAGAACTGTCTGTACCTTCTTTGGGTttacattgtgataactgcaaggagaaaaataaattgggctgagtggatagaaaatgataagggtaatggatgtttcctagtgggataaatgaggggagtttcttagtaggacatggagatctgaatgacctactggagcaaccaggtgacagccagaaggaaagagccacaggcaggctcagcaagttcaccaacctggggcaagTGGCTTCATCTGCTTTGTTAATCTTTGATGCTCCTGTCCAGAGAGGGCCTCTTAAGCAACTTGAGTGCAATAACTATTTTTCTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29959295 529 + 173848474 AGCAGACTTCGCAAGGCTTCTCTGACCTCTGCCTCCAGCTCTGGGATCTGTGAAACACACTGGGCTCTTCTTCTAGACCTCCCTTTTTGAAGCTCCTCCAAAGACCATTTCATCATCTCTACTCAACAGTCTCCTCAGGAAATTGCCTCTTCAGTAGGCAAATGTCACTTGCCACAAACTTATCTTTGGCATGAGGATAAGACAGTG-CTAAGGTAGAACTGTCTGTACCTTCTTTGGGTttacattgtgataactgcaaggagaaaaataaattgggctgagtggatagaaaatgataagggtaatggatgtttcctagtgggataaatgaggggagtttcttagtaggacatggagatctgaatgacctactggagcaaccaggtgacagccagaaggaaagagccacaggcaggctcagcaagttcaccaacctggggcaagTGGCTTCATCTGCTTTGTTAATCTTTGATGCTCCTGTCCAGAGAGGGCCTCTTAAGCAACTTGAGTGCAATAACTATTTTTCTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5769160 528 +   6154872 AGCAGACTTCGCAAGGCTTCTCTGGCCTCTGCCTCCAGCTCTGGGATCTGTGAAACACACGGGGGTC-TCTTCTAGACCTCCCTTTTTGAAGCTCCTCCAAAGACCATTTCATCATCTCTACTCAACAGTCTCCTCAGGAAACTGCCTCTTCAGTAGGCAAATGTCACTTGCCACAAGCTTATCTTTGGCATGAGGATAAGACAGTG-CTAAGGTAGAACTGTCTGTACCTTCTTTGGGTttacattgtgataactgcaatgagaaaaataaattgggctgagtggatagaaaatgataagggtaatggatgtttcctagtgcgatatatgaggggagtttcttagtaggacatggagatctgaatgacctactggagcaaccgggtgacagccagaaggaaagagccacaggcaggctcagcaagttcaccaccctggggcaagTGGCTTCATCTGCTTTGTTAATCTTTGATGCTCCTGTCCAGAGAGGGCCTCTTAAGCAACTTGAGTGCAATAACTATTTTTCTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74469946 523 + 122973662 AGCAGACTTCGCAAGGCTTCTCTGACCTCTGCCTCCAGCTCTGCGATCTGTGAAACACACTGGGGTCTTCTACTAGACCTCCCTTTTGGAAGTTCCTCCAAAGACCATTTCATCATCTCCACTCAACAGTCTCCTCAGGAAAATGCCTCTTCAGTATGCAAATGTCACTTGCCACAAACTTATCTTTGGCATGAGGATAAGACAGTG-TTAAGGTAGAACTGTCTGTACCTTCTTTGGGTTTACATTGTGATAAT------GAGAAAAATAAATTGGGCTGAGTGGATAGAAAATGATAAGGGTAACGGATGTTTCCTAGTGGGATAAATGAGGGGAGCTTCTTAGTAGGACATGGAGATCTGAATGACCTACTGGAGCACCCAGGTGACAGCCGGAAGGAAAGAGCCACAGGCAGGCTCAGCAAGTTCACCAGCCTGGGGCAAGTGGCTTCATCTGTTTTGTTAATCTTTGATGCTCCTGTCCAGAGAGGGCCTCTTAAGCAACTTGAGTGCAATAACTATTTTTCTAT
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            55702 521 -    242197 AGCAGACTTTGCAAGGCTTCTCTGACCTCTGCCTCCAGCTCTAGGATCTGTGAAACACACTGGTGTCTTCTCCTAAACCTCCTTTTTTTAAGCTCCTTGAAAGACCATTTTATCATCTCCAATCAG---------CAGGAAAATGCCTCTTCAGTAGGCATGTGTCACTTGCCACAAACTTATCTTTGGCATGAGGATAAGACAGTGACTAAGGCAGAACTGTCTGTATCTTCTTTGGGTttacattgtgataattgctataagaaaaataaaatggactgagtggataggaaatgataagggtaatgggtgtTTCCTAGTGGGATAAATGAGGGGACCTTCTTAGTAGGACATGAAGATTTGAGTGACCTACTAGAGCAGTTGGGTGACAACTGGAAGGAGAGAGCCACAGACAAACTCACCAAGTTCTCCACTCTGGGGCAAGTAGCTTCATCTGCTTTGCTAATCCTTAATGTTCCTTTCCAGAGAGGTCATCTTATGCAACTTGAGCTCAATAACTATTTTTCTAC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      85623 521 +    106389 AGCAGACTTTGCAAGGCTTCTCTGACCTCTGCCTCCAGCTCTAGGATCTGTGAAACACACTGGGGTCTTCTCCTAGACCTCCCTTTTTTAAGCTCCTCAAAAGACCATTTCATCATCTCCACTCAG---------CAGGAAAATACCCCTTCGGTAGACATATGTCACTTGCCACAAACTTATCTTTGGCATGAGGATAAGACAGTGACTAAGGCAGAACTGTCTGTATCTTCTTTGGGTttacattgtgatcattgctatgagaaaaataaattgggctgagtggataggaaatgataagggtaatgggtgtTTCCTAGTGGGATAAATGAGGGGATCTTCTTAGTAGGACATGGGGATTTGAGTGACCTGCTGGAACTGCTGGGTGACAACTAGAAGGAGAGAGCCACAGACAAGCTCACCAAGTTCTCCACTCTGGGGCAAGTAGCTTCATCTGCTTTGTTAATCATTAATGCTCCTGTCCGGAGAGGTCATCTTATGCAACTTGAGCTCAATAACTATTTTTCTAT
i cebCap1.NW_016108310v1   I 7624 I 213
s aotNan1.NW_018509740v1      97985 521 -    457564 AGCAGACTTTGCAAGGCTTCTCTGACCTCTGCCTCCAGCTCTAGGATCTGTGAAACACACTGGGGTCTTCTCCTAGACCTCCCTTTTTCAAGTTCCTCAAAAGACCATTTCATCATCTCCACTCAG---------CAGGAAAATGCCTCTTCAGTAGGCAAATGTCACTTGCCACAAACTTATCTTTGGCATGAGGATAGGACAGTGACTAAGGCAGAACTGTCTGTATCTTCTTTGGGTttacattgtaataattgctatgagaaaaataaattgggctgagtggataggaaatgataagagtaatgggtgtttcctagtgggataaatgaggggagcttcttagtaggacatggagatttgagtgacctgCTAGAGCAGCTGGGTGACAGCCAGAAGGAGAGAGCCACAGACAGGCTCGCCAAGTTCTCCACTCTGGGGCAAGTGGCTTCATCTGCTTTGTTAATCTTTAATGTTCCTGTCCGGAGAGGTCATCTTATGCAACTTGAGCTCAATAACTATTTTTCTAC
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=3514262.000000
s hg38.chr6_GL000254v2_alt   756015 1532 +   4827813 TATTGCGTTAATAAACCCCAAGAAGGTCCCTGCAACTCTAGAGAGTTAAAGACTTATAAGCCATTTTCAAGATTGGAGAATATTCTTATCTCAGCCATCAGTGGACAGAAAGGGGCAGCCAGGCCCCTTCAGAGCAGCACTGAGCTACTGTCCCTGGAGTGGTGGGGCCTGACCACAGCTTCCTCTTTCAACCA-TGGAATCCTTATCACTATTTTGCA-AACACCAAAGATGTAGCCTCAGATGTGAATCTACTCACATGCTGGAAGTTTGTCCATGATGTTGAGAGCTCGTTTAAGTGGAAGATCCTGGATGAGTGCAGATACAGACTGTGAGCAGGAGAGCTCTGCTCTGTCTCTTTTCAAGACTCTGAGACAGAGGCCAAGAGCCTAGCATGCAAAACACCTCAGACAATGCATCCAGGGTAGGGGAGAACTGATATGAACCATTCACCCTTAGCCAAAAACCTGCTCACCTTGGGCAGGTGTGGTACCTCAAGGCTGACCACAGACTAGAGGAGATCTCATGTGTCTTCCTTAGAGAGATTCCTGTCCACCTTCCTGTCTCAGGAAGATGGATGGAATCATTTCATTGGAGGATGCCAACATCCCCTGTCCAGGGCCCACTGCCTGAGCCTTGGACATTTCGGCTGAGCTGGCTAGGCCTCTGAGAATCAGCCCTGATGACCCTTGATGCCCCACTATGGAGTCCAGAACACTGAAGAACTTAGGATGCTTGAGAGGTGAAACGCTCTGGGCCCAAAGAGATCAGACCATCCTTTCCTGAGATCCTGAACACTGATAATGACTTCTCATACTTTAAGACAGCTTCACAGATGAAGTTGGCAGAGAAGCTGAGCTCACTAAAGCAGGATGTATCTGTAACAAGAAAAAAATCCTTAAATGAGTTGCTATAGCTGATCCATGGGAATGCCCAAAAAGATGTTACAGATTTCACTAGGGCTTAATCTTAGTCCTGCAGCACCAAGTACACACTCTTCCTCCTACTAACCTGGGAAGAGCCAGTTCAGGGGAGAACGGGAGGGAATAACCCAAATGTCCATTAACAGAGAGTGCCAACAGCTTCCAAAATGTGTCTCCAGTCAAGGACAGGCCAAGATGACtcatcaaagaaatgcaaatcaaaaccacaactagatagcaccttacgcctgttaggatggccattctggaaaaacaaaagataacaagtgctaatgaggatgtggagaaagggatccctcacacactgttggtgaaaatgcaaaatggcgcagctgctgt---gaaaagcagtatggaaattcctcaaaaaattaacagtagaactgcaccgtatggtccagaaatcccacttctgagtatttgtccaaaagaattgaaatcaggttttcaaagaaatattagcactcttatgtttgctgcaatactattcacaatagccaaaatgtggaaacaacctaaaaatccatcaaaaaatgaatggataaagaaaatgtgatataaacataagatagaatagtattcagcctttaaaaa
s panTro5.chr6             29730115 1530 + 175400573 TATTGTGTTAGTAAACCCCAAGAAGGTCCCTGCAACTCTAGAGAGTTAAAGACTTATAAGCCATTTTCAAGACTGGAGAATATTCTTATCTCAGCCATCAGTGGACAGAAAGGGGCAGCCAGGCCCCTTCAGAGCAGCACTGAGCTACTGTCCCTGGAGTGGTGGGGCCTGACCACAGCTTCCTCTTTCAACCA-TGGAATCCTTATCACTATTTTGCA-AACACCAAAGATGTAGCCTCAGATGTGAATCTACTCACATGCTGGAAGTTTGTCCATGATGTTGAGAGCTCGTTTAAGTGGAAGATCCTGGATGAGTGCAGATACAGACTGTGAGCAGGAGAGCCCTTCTCTGTCTCTTTTCAAGACTCTGAGACAGAGGCCAAGAGCCTAGCATGCAAAACACCTCAGACAATGCATCCAGGATAGGGGAGAACTGATATGAACCATTCACCCTTAGCCAAAAACCTGCTCACCTTGGGCAGGTGTGGTACCTCAAGGCTGACCACAGACTAGAGGAGATCTCATGTGTCTTCCTTAGAGAGATTCCTGTCCACCTTCCTGTCTCAGGAAGATGGATGGAATCATTTCATTGGAGGATGCCAACATCCCCTGTCCAGGGCCCACTGCCTGAGCCTTGGACATTTCTGCTGAGCTGGCTAGGCCTCTGAGAATCAGCCCTGATGACCCCTGATGCCCCACTATGGAGTCCAGAACACTGAAGAACTTAGGATGCTTGAGAGGTGAAATGCTCTGGGCCCAAAGAGATCAGACCATCCTTTCCTGAGATCCTGAACACTGATAATGACTTCTCATACTTTAAGACAGCTTCATAGATGATGTTGCCAGAGAAGCTGAGCTCACTAAAGCAGGATGTATCTGTAACAAGAAAAAAATCCTTAAATGAGTTGCTATAGCTGATCCATGGGAATGCCCAAAAAGATGTTACAGATTTCACTAGGGCTTAATCTTAGTCCTGCAGCACCAAGGACACA--CTTCCTCCTACTAACCTGGGAAGAGCCAGTTCAGGGGAGAACGGGAGGGAATAACCCAAATGTCCATTAACAGAGAGTGCCAACAGCTTCCAAAATGTGTCTCCAGTCAAGGACAGGCCAAGATGACtcatcaaagaaatgcaaatcaaaaccacaactagatagcaccttacgcctgttaggatggccattctgaaaaaacaaaagataacaagtgctaacaaggatgtggagaaagggatccctcacacactgttggtgaaaatgcaaaatggcgcagctgctgt---gaaaagcagtatggaaattcctcaaaaaattaacagtagaactgcaccatatggtccagaaatcccacttctgagtatttgtccaaaagaattgaaatcaggttttcaaagaaatattagcactcttatgtttgctgcaatactattcacaatagccaaaatgtggaaacaacctaaaaatccatcaaaaaatgaatggataaagaaaatgtgatataaacataagatagaatagtattcagcctttaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29959824 1530 + 173848474 TATTGTGTTAGTAAACCCCAAGAAGGTCCCTGCAACTCTAGAGAGTTAAAGACTTATAAGCCATTTTCAAGACTGGAGAATATTCTTATCTCAGCCATCAGTGGACAGAAAGGGGCAGCCAGGCCCCTTCAGAGCAGCACTGAGCTACTGTCCCTGGAGTGGTGGGGCCTGACCACAGCTTCCTCTTTCAACCA-TGGAATCCTTATCACTATTTTGCA-AACACCAAAGATGTAGCCTCAGATGTGAATCTACTCACATGCTGGAAGTTTGTCCATGATGTTGAGAGCTCGTTTAAGTGGAAGATCCTGGATGAGTGCAGATACAGACTGTGAGCAGGAGAGCCCTGCTCTGTCTCTTTTCAAGACTCTGAGACAGAGGCCAAGAGCCTAGCATGCAAAACACCTCAGACAATGCATCCAGGATAGGGGAGAACTGATATGAACCATTCACCCTTAGCCAAAAACCTGCTCACCTTGGGCAGGTGTGGTACCTCAAGGCTGACCACAGACTAGAGGAGATCTCATGTGTCTTCCTTAGAGAGATCCCTGTCCACCTTCCTGTCTCAGGAAGATGGATGGAATCATTTCATTGGAGGATGCCAACATCCCCTGTCCAGGGCCCACTGCCTGAGCCTTGGACATTTCTGCTGAGCTGGCTAGGCCTCTGAGAATCAGCCCTGATGACCCCTGATGCCCCACTATGGAGTCCAGAACACTGAAGAACTTAGGATGCTTGAGAGGTGAAACGCTCTGGGCCCAAAGAGATCAGACCATCCTTTCCTGAGATCCTGAACACTGATAATGACTTCTCATACTTTAAGACAGCTTCATAGATGACGTTGCCAGAGAAGCTGAGCTCACTAAAGCAGGATGTATCTGTAACAAGAAAAAAATCCTTAAATGAGTTGCTATAGCTGATCCATGGGAATGCCCAAAAAGATGTTACAGATTTCACTAGGGCTTAATCTTAGTCCTGCAGCACCAAGGACACA--CTTCCTCCTACTAACCTGGGAAGAGCCAGTTCAGGGGAGAACGGGAGGGAATAACCCAAATGTCCATTAACAGAGAGTGCCAACAGCTTCCAAAATGTGTCTCCAGTCAAGGACAGGCCAAGATGACtcatcaaagaaatgcaaatcaaaaccacaactagatagcaccttacgcctgttaggatggccattctgaaaaaacaaaagataacaagtgctaacgaggatgtggagaaagggatccctcacacactgttggtgaaaatgcaaaatggcgcagctgctgt---gaaaagcagtatggaaattcctcaaaaaattaacagtagaactgcaccatatggtccagaaatcccacttctgagtatttgtccaaaagaattgaaatcaggttttcaaagaaatattagcactcttatgtttgctgcaatactattcacaatagccaaaatgtggaaacaacctaaaaatccatcaaaaaatgaatggataaagaaaatgtgatataaacataagatagaatagtattcagcctttaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5769688 1533 +   6154872 TATTGAGTTAGTAAACCCCAAGAAGGTCCCTGCAACTCTAGAGAGTTAAAGACTTATAAGCCATTTTCAAGATTGGAGAATATTCTGATCTCAGCCATCAGTGGACAGAAAGGGGCAGCCAGGCCCCTTCAGAGCAGCACTGAGCTACTGTCCCTGGAGTGGTGGGGCCTGACCACAGCCTCCTCTTTCAACCA-TGGAATCCTTATCACTATTTTGCAGAACACCAAAGATGTAGCCTCAGATGTGAATCTACTCACATGCTGGAAGTTTGTTCATGATGTTGAGAGCTCGTTTAAGTGGAAGATCCTGGATGAGTGCAGACACAGACTGTGAGCAGGAGAGCGCTGCTCTGTCTCTTTTCAAGACTCTGAGACAGAGGCCAAGAGCCTAGCATGCAAAACACCTCAGACAATGCATCCAGGGTAGGGGAGAACTGATATGAACCATTCACCCTTAGCCAAAAACCTGCTCACCTTGGGCAGGTGTGGTACCTCAAGGCTGACCACAGACTAGAGGAGATCTCATGTGTCTTCCTTAGAGAGATTCCTGTCCACCTTCCTGTCTCAGGAAGATGGATGGAATCATTTCATTGGAGGATGCCAACATCCCCTGTCCAGGGCCCACTGCCTGAGCCTTGGACATTTCTGCTGAGCTGGCTAGGCCTCTGAGAATCAGCCCTGATGACCCTTGATGCCCCACTATGGAGTCCAGAACACTGAAGAACTTAGGATGCTTGAGAGGTGAAACGCTCTGGGCCCAAAGAGATCAGACCATCCTTTCCTGAGATCCTGAACACTGGTAATGACTTCTCATACTTTAAGACAGCTTCATAGATGAAGTTGCCAGAGAAGCTGAGCTCACTAAAGCAGGATGTATCTGTAACAAGAAAAAAATCCTTAAATGAGTTGCTATAGCTGATCCATGGGAATGCCCAAAAAGATGTTACAGATTTCACTAGGGCTTAATCTTAGTCCTGCAGCACCAAGGACACACTCTTCCTCCTACTAACCTGGGAAGAGCCAGTTCAGGGGAGAACGGGAGGAAATAACCCAAATGTCCATTAACAGAGAGTGCCAACAGCTTCCAAAATGTGTCTCCAGTCAAGGACAGGCCAAGATGACtcatcaaagaaatgcaaatcaaaaccacaactagatagcaccttacgcctgttaggatggccattctggaaaaacaaaagataacaagtgctaatgaggatgtggagaaagggatccctcacacactgttggtgaaaatgcaaaatggcgcagctgctgt---gaaaagcagtatggaaattcctcaaaaaattaacagtagaactgcgccatatggtccagaaatcccacttctgagtatttatccaaaagaattgaaatcaggttttcaaagaaatattagcactcttatgttcgctgcaatactattcacaatagccaaaatggggaaacaacctaaaaatccatcaaaaaatgaatggataaagaaaatgtgatataaacataagacagaacagtattcagcctttaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74470469 1516 + 122973662 TATTGAGTTAGTAAACCCCAAGGAGGTCCCTGCAACTCTAGAGAGTTAAATACTTGTAAGCCATATTCAAGATTGGAGAATATTCTGATCTCAGCCATCAGTGGACAGAAAGGGGCAGCCAGGCCCCTTCAGAGCAGCACTGAGCTGCTGTCCCTGGAGTGGTGGGGCCTGACCAGAGCTTCCTCTTTCAACCA-TGGAATCCTTATCACTATTTTGCAGAAAACCAAAGATATAGCCTCAGATGTGAATCTACTCACATGCTGGAAGTTTGTCCATGATGTTGAAAGCCTGTTTAAGTGGAAGATCCTGGATGAGTGCAGATACAGACTGTGAGCAGGAGAGTTCTGCTCTGTCT-GTTTCAAGACTCTGAGACAGAGGCCAAGAGCCTAGCATGCAAAACACCTCAGACAATGCATCCAGGGTAGGGGAGAACTGATATGAACCATTAACCCTCAGCCACAAACCAGCTCACCTTGGGCAGGTGTGGTACCTCAAGGCTGACCACAGACTAGAGGAGATCTCATGTGTCTTCCTTGGGGAGATTCCTGGCCACCTTCCTGTCTCAGGAAGATGGTTGGAATCATTTCATTGGAGGATGCCAACATCCCCTGCCCAGGGCCCACTGCCTGAGCCTTGGACATTTCTGCTGAGCTGGCTAGGCCTCTGAGAATTAGCCCTGATGACCCTTGATTCCTCACTATGGAGTCCAGAACACTGAAGAACTTAGGATGCTTGAGAGGTGAAATGCTCTGGGCCCAAAGAGATCAAACCATCCTTTCCTGAGATCCTGAACACTGATAATGACTTCTCATACTTTAAGACAGCTTCATAGATGAAGTTGTCAGAGAAGCTGAGCTCACTAAAGCAGGATGTTTCTGTAACAAGGAAAAAATCATTAAATGAGTTACTATAGCTGATCCATGGGAATATCCAAAAAGATGTTACAAATTTCACTAGGGCTTAATCTTAGTCCTGCAGCACCAAGGACACACTCTTCCTCCTACTGACCTGGGAAGAGCCAGTTCAGGGTAGAACAGTAGGAAATAACCCAAATGTCCATTAACAGAGAGTGCCAACAGCTTCCAAAATGTGTCTCCAGTTAAGGACAGGCCAAGATGACtcatcaaagaaatgcaaatcaaaaccacaactagatagcaccttacacctgttaggatgaccattctggaaaaacaaaagataacaagtgctaatgaggatgtggaaaaacggaaccctcacacactgttggtgaaaatgtaaaatggt-------------------gcagtatggaaattcctcaaaaaattagtagtagaactgcaccatatggtccagaaatcccacttctgagtatttatccaaaagaattgaaatcagattttcaaagaaatattagcactcttatgttcactgcaatactattcacaatagccaaaatgtggaaacaacctaaaaatccatcaaaaaatgaatggataaagaaaatgtgatataaacataagatagaactgtattcagcctttaaata
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            56223 1518 -    242197 TATTGAGTTAGTAAACCCCAAAAAGGTCTCTGCAATTCTAGAGAAGTAAGGGCTTATAAGCCATATTCAAGGTCGA----TATTCTGATCTCAGCCATCAGTGTACAGAAAGGGGCAGCCAGACCCCTTCAGAGCAGCACTGAGCTGCTGTCCCTGGAGTGGTGGAGCCTGACCACAGCTTCCTCTTTCAACCACTGAAATCCTTATCACTATTTTGCAGAAGACCAAAGGCATAGTCTCAGATGTGAATCTACTCACATGTTGGAAGTTTGCCCATGATGCTGAGAGCTGGTTTAAGTGGAAGATTCTGGATGAGTGCAGATATGAACTGTCAGCAGGAGAGCTCTGCTCTGTCTTTTTTCAAGACTCTGAGACAGAGGCCAAGAGCCTAGCATG-AAAACACCTCAGACAATGCATCCAGAATAAGGGAGAACTGATATGAACCATTCACCCTCAGCCAAAAACCTGCTAACCTTGGGGAGGTGTGGTACCTCAAGGCTGACCACAAAATA---GAGATCTCATGTGTTTTCCTTGGGGAGATTCCTGGCCACCTTCCTGTCTCAGGAAGATGAATGGAACTGTTTCACTGGAAGATGCCAACATCCCCTGTCCAGGGCCCTTTCTCTGAGCCTTGGACATTTCTGCTGAGTTGGCTAGGGCTCTGAGAATCAGCCCTGATGACCCT-GATGCCCCGTTATGGAGTCCAGAACACTGAAGAACTTAGGATGCTTGAGAGGTGAAACCCTCTCGGCCCAAGGAGATCGAACCATCCTTTCCAAAGATCCTGAACACTGATAGTGACTTCTTATACTTGAAGACAGCTTCATAGGTGAAGTTGTCAGAGAAGTTGAGCTCACTAAAGCAAGATGTTTCTGTAACAA-AGAAAAATCATTAAATGAGGCACTACAGCTGATCCATGGGAATTTTCAACAAGATGTTAAAGATTTCACTAGAGCTTAATCTTAGTCCTGCAGCACCAAGGGTATACTCTTCCTCCTACTGACCTGGGAAGAGCCAGTTCAGGGGAGAATAGGAGGAAAGAACCCCAATGTCCATTAACAGAGAGTGCCATCAGCTTCCAAAATGTGTCTCCAGTCAAGGACAAGCCAAGGTGACtcatcaaagagatgc-aatcaaaaccacaactagatagcaccttacacctgttaggatggccattatggaaaaacaaaagataacaagtcctgatgtggatgtggaaaaagggaacactcacatactgttgatgaaaatgtaaaatggtgcatcttctat----taaaaaaaaatggagattactaaaaaaattaacaatagaattgtaccatatgatccagaaatcccacttccgaatatttatccaaaagaactaaaatcagattttcaaagaaatattaggactctgatgtacactgcaatactattcgcaatagccaagatgtggaaacaacctaaatatccatcaaaaaatgaatg----aagaaaatgttatgtgaacataccatagaacagtatccagcccttaaaaa
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      86357 1527 +    106389 TATTGAGTTAGTAAACCCCAGACAGGTCCCTGCAACTCTAGAGAGGTAAGGGCTTATAAGCCATATTCAAGGTTGG----TATTCTGATCTCGGCCATCAGTGTACAGAAAGGGGCAGCCAGGCCCCTTCAGGGCAGCACTGAGCTGCTGTCCCTGGAGTGGTGGGGCCTGACCACAGCTTCCTCTTTCAACCACTAAAATCCTTATCACTATTTTGCAGAAGACCAAAGATGTAATCTCAGATGTGAATCTACTCACATGTTGGAAGTTTGCCCGTGATGCTGAGAGCTCATTTAAGTGGAAGATCCTGGATGAGTGCAGATATGAACTGTCAGCAGGAGAGCTCTGCTCTGTCTTTTTTCAAGACTCTGAGACAGGAGCCAAGAGCCTAGCATG-AAAACACCTCAGACAATGCATCCAGAGTAAGGGAGAACTGATATGAACCATTCACCCTCAGCCAAAAACCTGCTCACCTTGGGGAGGTGTGGTACCTCAAGGCTGATCACAGAATAGAGGAGATCTCATGTGTTTTCCTTGGGGAGATTCCTGGCCACCTTCCTGTCTCAGGAAGATGAATGGAACTGTTTCATTGGAAGATGCCAACATCTCCTGTCCAGGGCCCACTCTCTGAGCCTTGGACATTTCTGCTGAGTTGGCTAGGGCTCTGAGAATCAGCCCTGATGACCCCAGATGCCCCATTATGGAGTCCAGAACACTGAAGAACTTAGGATTCTTGAGAGGTGAAACCCTCTGGGCCCAAGGAGATCAAACCATTCTTTCCAAAGATCCTGAATACTGACAGTGACTTCTTATACTTTAAGACAGCTTCATAGGTGAAGTTGTCAGAGAAGTTGAGGTCACTAAAGCAAGATGTTTCTGTAACAA-AGAAAAATCATTAAATGAGGCACTACAGCTGATCCATGGGAATGTTCAACAAGATGTTACAGATTTCACTAGAGCTTAATCTTAGTCCTGCAGCACCAAGGGCATGCTCTTCCTCCTACTGACCTGGAAAGAGCCAGTTCAGGGGAGAATAGGAGGAAAGAACCCAAATGTCCATTAACAGAGAGTGCCATCAGCTTCCAAAATGTGTCTCCAGTCAAGGACAAACCAAGGTGACtcatcaaagaaatgcaaatcaaaaccacaactagatagcaccttacacatgttaggatggccattatggaaaaacaaaagataacaagtgctgacaaggatgtggaaaaagggaacactcacacactgttgatgaaaatgtaaaatggtgcagtttctgtaaaaaaaaaaaaaatggagattactcaaaaaattaacaatagaattgcaccatatgatccaggaatcccacttccaaatatttatccaaaagaattaaaatcagattttcaaagaaatattaagactctgatgtacactgcaatattattcacaatagccaagatgtggaaaaaaactaaaaatccatcaaaaaatgaatg----aagaaaatgttacgtgaacataccataaaacagtattcagcccttaaaaa
i cebCap1.NW_016108310v1   I 213 C 0
s aotNan1.NW_018509740v1      98506 1519 -    457564 TATTGAGTTAGTAAACCCCAAAGAGGTCCCTGCAACTCTAGAGAGGTAAGGGCTTATAAGCCATATTCAAGGTTGG----TATTCTGATCTCAGCCATCAGTGTACAGAAAGGGGCAGCCAGGCCCCTTCAG-GCAGCACTGAGCTGCTGTCCCTGGAGTGATGGGGCCTGACCACAGCTTCCTCTTTCAACCACTGAAATCCTTATCACTATTTTGCAGAAGACCAAAGACGTAGCCCCAGATGTGAATCTACTCACATGTTGGAAGTTTGCCCGTGATGCTGAGAGCCCGTTTAAGTGGAAGATCCTGAATGAGTGCAGATATGACCTGTCAGCAGGAGATCTCTGCTCTGTCTTTTTTCAAGACTCTGAGAAAAAGGCCAAGAGCCTAGCATG-AAAACACCTCAGATAATGTATCCAGAGTAAGGGAAAACTGGTATGAACCATTCACTCTCAGCCAAAAACCTGCTCACCTTGGGGAGGTGTGGTACCTCAAGGCTGATCACAGAATAGAGGAGATCTCATGTG---TCTTTGGGGAGATTCCTGGCCACCTTCCTGTCTTAGGAAGATGAATGGAACTGTTTCATTGGACGATGCCACCATCCCCTGTCCAGGGGCCACTCTCTGAGCCTTGGACATTTCTGCTGAGTTGGCTAGGGCTCTGAGAATCAGCCCTGATGACCCTAGATGCCCCACTATGGAGTCCAGAACACTGAAGAACTTAGGATGTTTGAGAGGTGAAACCCTCTGGGCCCAAGGAGATCAAACCACCCTTTCCAAAGATCCTGAACACTAACAGTGACTTCTTAAACTTTAAGACAGTTTCATAGATGAAGTTGTCAGAGAAGTTGAGCTCACTAAAGCAAGATGTTTCTGTAACAA-AGAAAAGTCATTAAATGAGGCACTACAGCTGATCCATGGGAATGTTCAACAATATGTTACAGATTTCACTAGAGCTTAATCTTAGTCCTGCAGCACCAAGGGCATACTCTTCCTCCTACTGACCTGGGAAGAGTCAGTTCAGGGGAGAATAGGAGGAAAGAACCCAAATGTCCATTAACAGAGAGTGCCATCAGCTTCCAAAATGTGTCTCCAGTCAAGGACAAGCCAAGCTGACtcatcaaagaaatgcaaatcaaaaccacaactagatagcactttaaacccattaggatggccattatggaaaaacaaaagataacaagtgctgatgaggatgtggaaaaagggaacactcacatactgttggtgaaaatgtaaaatgatgcaacttctgt----gaaaaaaatatggagattactcaaaaaattaacaatagaattgcaccatatgatccagaaatcccacttctgaatatttatccaaaaaaattaaaatcagattttcaaagaaatattagcg-tctgatgtacactgcaatactgtttacaatagccaagatgtggaaacaacctgaatattcatcaaaaaatgaatg---aaaaaaaatgttatgtgaacataccatagaacagtattcagcccttgaaaa
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376    1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=1500.000000
s hg38.chr6_GL000254v2_alt   757547 1 +   4827813 g
s panTro5.chr6             29731645 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29961354 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5771221 1 +   6154872 g
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74471985 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s aotNan1.NW_018509740v1     100025 1 -    457564 g
i aotNan1.NW_018509740v1   C 0 I 830
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            57741 0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e cebCap1.NW_016108310v1      87884 0 +    106389 C
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376 1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=261188.000000
s hg38.chr6_GL000254v2_alt   757548 301 +   4827813 gaagaaatttggccaggtgtggtggctcacgcctataatcccagcactttgggaggccaaggtgaatggatcacgaggtcaggagttcaagagcaacttgaccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggcaggtgcctgtaatcccagctacttgggaggctgaagcagagaattgcatgaacctgggaagcggaggttgtagtgagccgagattacaccactgcactccagcctgggcaggggagggagactccatctcaaaaaaa--------------aaatg
s panTro5.chr6             29731646 309 + 175400573 gaagaaatttggccaggtgtggtggctcacgcctataatcccagccctttgggaggccaaggtgaatggatcacgaggtcaggagttcaagagcaacttgaccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggcaggtgcctgtaatcccagctacttgggaggctgaagcagagaattgcatgaacctgggaagcggaggttgtagtgagccgagattacaccactgcactccagcctgggcaggggagggagactccatctcaaaaaaa------aaaaaaagaaatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29961355 307 + 173848474 gaagaaatttggccaggtgtggtggctcacgcctataatcccagccctttgggaggccaaggtgaatggatcacgaggtcaggagttcaagagcaacttgaccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtggcaggtgcctgtaatcccagctacttgggaggctgaagcagagaattgcatgaacctgggaagcggaggttgtagtgagccgagattacaccactgcactccagcctgggcaggggagggagactccatctcaaaaaaa--------aaaaagaaatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5771222 315 +   6154872 gaagaaatttggccaggtgtggtggctcatgcctataatcccagcactttgggaggccaaggtgaatggatcacgaggtcaggagttcaagagcaacttgaccaacatggtgaaactccgtctctactaaaaatacaaaaattaactgggcatgatggcaggtgcctgtaatcccagctacttgggaggctgaggcagagaattgcatgaacctgggaagtggaggttgtagtgagccgagattacaccactgcactccagcctgggcaggggagggagactccatctcaaaaaaaaaaaaaaaaaaaaaaaatg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74471986 301 + 122973662 gaagaaatttggccaggtgtggtggctcacacctgtaatcccagcagtttgggaggccaaggtggatggatcatgaggccaggaattcaagaccaacttgaccaatatggagaaa---------tactaaaaatacaaaagttagctgggcgtggtggcgggtgcctgtaatcccagctacttgggaggctgaagcagagaattgcatgcacctgggaggcggagattgtagtgagctgagattacaccactgcactccagcctgggcggcagagtgagactccatctcaaaaaaa-----aaaaaaaaaaaaag
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            57741   0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     100026 830 -    457564 I
e cebCap1.NW_016108310v1      87884   0 +    106389 C
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=906824.000000
s hg38.chr6_GL000254v2_alt   757849 516 +   4827813 gaagaaattctgtcatatatgacaacatagttgaacctgcagatcattatggtaagtgagattagccagtcatagaagaataaatcctgcatgcacttaaatagggtatctaaaatagtcaaattcatagaaacaaagagtgggatggttgttccctgggctgtaggacaggaagtagggagctagtagtcagtgggcataaagtttcagtttaacaaaatagataagcactagagctctactgcacaaaagtagtagttgcctatagttaacaacagtgtactgGAATGTTTTTGCAACTGaagctgcttcatctttttgagcctctggtatttcctctgcaaaattagaatactgataatacctacttgtgggtttgaaaattaaatgggtggatagcatgtaagtgcatggaacagtgatga-gcatatagtgagagatgaatgaatAAATACTGTCCTGTTGGGACAGATGAA---TGTcaataagcaaatgcagtaaattggatcatttcagacg
s panTro5.chr6             29731955 516 + 175400573 gaagaaattctgtcatatatgacaacatagttgaacctgcagatcattatggtaagtgagattagccagtcatagaagaataaatcctgcatgcacttaaatagggtatctaaaatagtcaaattcgtagaaacaaagagtgggatggttgttccctgggctgtaggacaggaagtagggagctagtagtcagtgggcataaagtttcagtttaacaaaatagataagcactagagctctactgcacaaaagtagtagttgcctatagttaacaacagtgtactgGAATGTTTTTGCAACTGaagctgcttcatctttttgagcctctggtatttcctttgcaaaattagaatactgataatacctacttgtgggtttgaaaattaaatgggtggatagcatgtaagtgcatggaacagtgatga-gcatatagtgagagatgaatgaatAAATACTGtcctgttgggacagaagaa---tgtcaataagcaaatgcagtaaattggatcatttcagacg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29961662 516 + 173848474 gaagaaattctgtcatatatgacaacatagttgaacctgcagatcattatggtaagtgagattagccagtcatagaagaataaatcctgcatgcacttaaatagggtatctaaaatagtcaaattcgtagaaacaaagagtgggatggttgttccctgggctgtagcacaggaagtagggagctagtagtcagtgggcataaagtttcagtttaacaaaatagataagcactagagctctactgcacaaaagtagtagttgcctatagttaacaacagtgtactgGAATGTTTTTGCAACTGaagctgcttcatctttttgagcctctggtatttcctttgcaaaattagaatactgataatacctacttgtgggtttgaaaattaaatgggtggatagcatgtaagtgcatggaacagtgatga-gcatatagtgagagatgaatgaatAAATACTGtcctgttgggacagaagaa---tgtcaataagcaaatgcagtaaattggatcatttcagacg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5771537 516 +   6154872 gaagaaattcggtcctatatgacaacatagttgaacctgtagatcattatggtaagtgagattagccagtcatagaagaataaatcctgcatgcacttaaatagggtatctaaaatagtcaaattcatagaaacaaagagtgggatggttgttccctgggctgtaggacaggaagtagggagctagtagtcagtgggcataaagtttcagtttaacaaaatacataagcactagagctctactgcacaaaagtagtagttgcctatagttaacaacagtgtactgGAGTGTTTTTGCAACTGaagctgcttcatctttttgagcctctggtatttcctctgcaaaattagaatactgataatacctacttgtgggtttgaaaattaaatgggtggatagcatgtaagtgcatggaacagtgatga-gcatatagtgagagatgaatgaatAAATACTGTCCTGTTgggacagatgaa---tatcaataagcaaatgcagtaaattggatcatttcagacg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74472287 517 + 122973662 gaagaaattctgccatatatgacaacacagttgaacctggagatcattatggtaagtgagattagccagtcatagaagaataaatactgcatgcacttaaatggggtgtctaaaatagtcaaattcgtagaaacaaacagtgggatggttgttccctgggctgtaggataggaagtagggagctagtaatcagttggcataaagtttcagtttaacaaaatagataagcactagagctctactgcacaaaagtagtagttgcctattgttaacaacagtgtactgGAATGTTTTTGCAACTGaagctgcttcagctttttgagcctcaggtacttcctctgcaaaattagaatactgataacacctacttgtgggtttgaaaattaaatgggtggatagcatgtaagtgcatagaacagtgctgaggtatatagtgagagatggatgaatAAATATCGTTTTTTGGGGACAGATGAA---TATCAATATGCAAATGCAGTAAATTGGATCATTTCAGATG
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            57741 516 -    242197 gaagaaattctgtcatatgttacaacatagttgaacctggagatcattatggtaagtgagattagccagtcataaaagaagaaatactccatgcacttaaatggggtatctaaaatagtcaaatttatagaagccaagagtgggatggttgttccctgggatggagggtaggaagtagggagttagtggtcagtgggcataaagtttcagtttagcaaaatagataagtactagagctctactgcacaacagtagtagttgcctatagtcaacattagtgtactgAAGTGTTTTTGGAACTGaagctgcttcatctttttgagcctcgggtgcttcctctgcaaaattagaatactggtaatacctactcgtgggtttgaaaattaaatgggtggatagcatgtaagtgcctagagcagtgctaa-gtatatagtgagagatggataaatAAATATCATCCTTTTGGGGCAGATGAA---TATTAATAAGCAAATGCAGTAAATTAGATCATTTCAGATG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      87884 516 +    106389 gaagaaattctgtcatatgttacaacatagttgaacctgaagatcattatggtaagtgagattagccagtcataaaaaaataaatactccatgcacttaaatggggtatctaaaatagtcaaattcatagaagccaagagtgggatggttgttccctcggatggagggtaggaagtagggagctagtgatcggtgagcataaagtttcagtttaacaaaatagataagtactagagctctgctgcacaacagtagtagttgcctatagtcaacaatagtgtactgAAATGTTTTTGGAACTGaagctgcttcatcgttttgaacctcaggtacttcctctgcaaaattagaatactggtaatacctacttgtgggtttgaaaattaaatgggtggatagcatgtaagtgcctagagcagtgctaa-gtatatagtgagagatggataaatAAAT---ATCCTGTTGGGGAAGATGAATATTATTAATAAGCAAATGCAGTAAATTAGATCATTTCAGGTG
i cebCap1.NW_016108310v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     100026 830 -    457564 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=357927.000000
s hg38.chr6_GL000254v2_alt   758365 162 +   4827813 gtgcttactactctgaagg--aaaaaaaaaagtggcagtgggatggactatcttaaggaaaacgggaaagacagtgagccacttaggttggtcctttctgagctgacaatattttctggctttttcaggaagccaatcctgggaatatctagaggaatagtgct
s panTro5.chr6             29732471 162 + 175400573 gtgcttactactctgaagg--aaaaaaaaaagtggcagtggggtggactatcttaaggaaaacgggaaagacagtgagccacttaggttggtcctttctgagctgacaatattttctggctttttcaggaagccaatcctgggaatatctagaggaatagtgct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29962178 161 + 173848474 gtgcttactactctgaagg---aaaaaaaaagtggcagtgggatggactatcttaaggaaaacgggaaagacagtgagccacttaggttggtcctttctgagctgacaatattttctggctttttcaggaagccaatcctgggaatatctagaggaatagtgct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5772053 161 +   6154872 gtgcttactactctgaagg---aaaaaaaaagtggcagtgggatggactatcttaaggaaaacgggaaagacagtgagccacttaggttggtcctttctgagttgacaatattttctggctttttcaggaagccagtcctgggaatatctagaggaatagtgcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74472804 161 + 122973662 GTGCTTACTACTATGAAGG---AAAAAAAAAGTGGCAGTGGGATGGACTATCTTAAGGAAAACAAGAAAGACACTGAGCCACTTAGATTGGTCCTTCCTGAGTTGACAATATTTCCTGGCTTTTTCaggaagccaatcctgggaatatctagaggaatagtgcc
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            58257 164 -    242197 GTGCTTGCTACTCTTACGGAACAAAAAAAAAGTGGCAGTGGAATGGACTATCCCAAGGAAAACGAAAAAGACACTGAGCCACTTAGGTTGGTCCTTTCTGAGTTGGTAATATTTCCTGACTTTTTCAGTAAGACAATCCTGGGTatatctagaggaagactgcc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      88400 161 +    106389 GTGCTTGCTACTCTTACGG---AAAAAAAAGGTGGCAGTGGAATGGACTATCCCAAGGAAAACGAGAAAGACACTGAGCCACTTAGGTTGGTCCTTTCTGAGTTGGTAATATTTCCTGGCTTTTTCagaaagacaatcctgggtatatctagaggaagactgcc
i cebCap1.NW_016108310v1   C 0 I 21
s aotNan1.NW_018509740v1     100856 160 -    457564 GTGCTTGCTACTCTTAAGG----AAAAAAAAGTGACAGTGGAATGGACTATCCTAAGGAAAACGAGAAAGACGCTGAGCCACTTAGGTCGGTCCTTTCTGAGTCGGTAATATTTCCTGGTTTTTTCaggaagacaatcctgcatttatctagaggaagagtgcc
i aotNan1.NW_018509740v1   I 830 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=19500.000000
s hg38.chr6_GL000254v2_alt   758527 15 +   4827813 gcaggtagtgggaac
s panTro5.chr6             29732633 15 + 175400573 gcagatagtgggaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29962339 15 + 173848474 gcagatagtgggaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5772214 15 +   6154872 gcagatagtgggaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74472965 15 + 122973662 ccagatagtgggaac
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            58421 15 -    242197 acatattgtgagcac
i saiBol1.JH378357         C 0 I 1
s aotNan1.NW_018509740v1     101016 15 -    457564 ccatatcgtgggcac
i aotNan1.NW_018509740v1   C 0 I 6
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e cebCap1.NW_016108310v1      88561 21 +    106389 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376  1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=2660.000000
s hg38.chr6_GL000254v2_alt   758542 5 +   4827813 -aggaa
s panTro5.chr6             29732648 5 + 175400573 -aggaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29962354 5 + 173848474 -aggaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5772229 5 +   6154872 -aggaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74472980 5 + 122973662 -aggaa
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            58437 5 -    242197 tatgg-
i saiBol1.JH378357         I 1 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     101031 6 -    457564 I
e cebCap1.NW_016108310v1      88561 21 +    106389 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376 1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=874167.000000
s hg38.chr6_GL000254v2_alt   758547 403 +   4827813 gtacaaaggcgcataggaagaacagtcgtatggttgaagaaaagaaagaaggccagtgtggctgaagtttagggagggaaagagagagtgagagaaataagcttttagagaggtaggcaggtgtggaatcatataggccaagataagaagtttgaattttaagtgcaatgtccaggtgttggaaagttttaagctcagataataatattatctgg----atttattta--------------------tttctttagagacaaggtctcactctctcacccccaggctggagtgcagtgatgcaatcactgctgactgcagcttccacctctccagcccaatcgatgcctccacctcagcctcctgagtggctgggaccacaggcgtgtgctgccacatctggctaggtttcttttttaattttcta
s panTro5.chr6             29732653 403 + 175400573 gtacaaaggcgcataggaagaacagtcgtatggttgaagaaaagaaagaaggccagtgtggctgaagtttagggagggaaagagagagtgagagaaataagtttttagagaggtgggcaggtgtggaatcatataggccaagataagaagtttgaattttaagtgcaatgcccagctgttggaaagttttaagctcagataataatattatctgg----atttattta--------------------tttctttagagacaaggtctcactctctcacccccaggctggagtgcagtgatgcaatccctgctgactgcagcttccacctctccagcccaatcgatgcctccacctcagcctcctgagtggctgggaccacaggcttgtgctgccacatctggctaggtttcttttttaattttcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29962359 407 + 173848474 gtacaaaggcgcataggaagaacagtcgtatggttgaagaaaagaaagaaggccagtgtggctgaagtttagggagggaaagagagagtgagagaaataagtttttagagaggtgggcaggtgtggaatcatataggccaagataagaagtttgaattttaagtgcaatgcccagctgttggaaagttttaagctcagataataatattatctggatttatttattta--------------------tttctttagagacaaggtctcactctctcacccccaggctggagtgcagtgatgcaatccctgctgactgcagcttccacctctccagcccaatcgatgcctccacctcagcctcctgagtggctgggaccacaggcgtgtgctgccacatctggcgaggtttcttttttaattttcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5772234 403 +   6154872 gtacaaaggcgcataggaagaacagtcatatggttgaagaaaagaaagaaggccagtgtggctgaagtttagggagggaaagagagagtgagagaaataagtttttagagaggtaggcaggtgtggaatcatataggccaagataagaagtttgaattttaagtgcaatgtccagctgttggaaagttttaagctcagataataatattatctgg----atttattta--------------------tttctttagagacaaggtctcactctctcacccccaggctggagtgcagtgatgcaatcactgctgactgcagcttccacctctccagcccaatcgatgcctccacctcagcctcctgagtggctgggaccacaggcgtgtgctgccacatctggctaggtttcttttttaattttcta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74472985 400 + 122973662 gtacaaaggcccataggaagaacagtcatacggtt---gaaaagaaaaaaggccagtgtggctgaagtttagggagggaaagagagagtgagagaagtaaatttttagagaggtaggcaggtgtggaatcatataggccaagataagaagtttgaattttaagtgcaatggccagctgttggaaagttttaagctcagataataatattatctgg----atttattta--------------------tttatttagagacaaggtctcactctgtcacccccaggctggagtgcagtgatgcagtcaccgctgactgcagcttccacctctccagcccaatcgatgcccccacctcagccttctgagtagctgggatcacaggtgtgtgctgccacatctggctaggtttcttttttaattttcta
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            58442 396 -    242197 gtacaaaggcccataggaaggatggtcgtatagttgaagaaaagaaagaaggccagtgtagctgaagtttagggaaggaa----agagggagagaaataag--tttagaggagtaggcacctgtggaattatataggccaagacaagaaatttgaattttaaattcaatggctggctgttggaaagttttaaactcagagaataataatatctgg----atttatTTATTTATTCATTCA--------TTCAtttagagatgaggtctcagtctgtcacccacaggctggagttcagtggtgcaatca-------------cttccacctctccagcccaatcaatgcccccacctcagcctcctgagtagctgggaccacaggcatgtcccaccacatctggctatgtttcttttttaattttcta
i saiBol1.JH378357         C 0 I 19
s cebCap1.NW_016108310v1      88582 404 +    106389 gtacaaaggcccataggaaggacagtcgtatgattgaagaaaagaaagaaggccagtgtggctgaagtttagggaaggaa----agagtgagagaaataag--tttagagaagtaggcacctgtggaattatataggccaagacaagaagtttgaattttaaattcaatggccagctgttggaaagttttaaactcagagaataataatatctgg----atttatTTAGTTATTTATTCAttctttctttcttttagagatgaggtctcactctgtcacccacaggctggagtgcagtggtgcaatca-------------cttccgcctctccagcccaatcaatgccgccacctcagcctcctgagtagctgggaccacaggtgtgtgctgccacaactgactacgtttcttttttaatttccta
i cebCap1.NW_016108310v1   I 21 I 38
s aotNan1.NW_018509740v1     101037 404 -    457564 gtacaaaggcccacaggaaggacagtcatatagttgaaaaaaagaaagaaggccagtgtggctgaagtttagggaaggaa----agagtgagagaaataag--tttagagaagtaggcacctgtggaattatatgggccaagacaagaagtttgaattttaaattcaatggccagctgtcagaaagttttaaacttagagaataataatatctgg----atttatTTAGTTATCCATTCATTCATTAATTCAtttagaggtgagatcccactctgtcacccacaggctggagtgcagtggtgcaatca-------------cttccacctctccagcccaatcgatgcccccacctcagcctcatgagtagctgggaccacaggtgtgtgcctccacatctggctaggtttcttttttaattttcta
i aotNan1.NW_018509740v1   I 6 I 9
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=81638.000000
s hg38.chr6_GL000254v2_alt   758950 58 +   4827813 atttttttcttt--------------------------------------------------ttgtagagatgggagtctccctttgttgccctgtgctggtctcaaa
s panTro5.chr6             29733056 58 + 175400573 atttttttcttt--------------------------------------------------ttgtagagatggaagtctccctttgttgccctgtgctggtctcaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29962766 58 + 173848474 atttttttctgt--------------------------------------------------ttgtagagatgggagtctccctttgttgccctgtgctggtctcaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5772637 58 +   6154872 atttttttcttt--------------------------------------------------ttgtagagatgggagtctccctttgttgccctgtgctggtctcaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74473385 58 + 122973662 atttttttcttt--------------------------------------------------ttgtagagatgggagtctccctatgttgccttgtgctggtctcaaa
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            58857 98 -    242197 tctttttttttttttttgttttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgtagagatggtagtct----------ccctatgctggtctcaaa
i saiBol1.JH378357         I 19 I 1
s aotNan1.NW_018509740v1     101450 58 -    457564 tctttttttttt--------------------------------------------------ttgtagagatgggagtcttcctgtgttgccctatgctggtctcaaa
i aotNan1.NW_018509740v1   I 9 I 1
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e cebCap1.NW_016108310v1      88986 38 +    106389 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376  1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=5065910.000000
s hg38.chr6_GL000254v2_alt   759008 2253 +   4827813 ttcctgagctcaagagatcccctccaccccgaccccacaaattgctgggattacagggatgagttgccatgcccagccaaggatttgcatttta-aagatcactactgtgcacttaaaattattaggataatagatctcgtgtcaagaattcttaccaaaatgaaGCAAAATTCGCACACA-AAAAAAGAATAAGCAAGGATGGATTCCAGTCCCCAGTCCTCAAATGAAGGGTTGCACTGTCCTGATAATGTTCTTTCCCTTGGGGAAAACACATCTAAAATCCTTGCAAAAACTCCTCCGAATTagagagatgagaaagagagtcagatgaagagagaACACAGTTCTCATCTTACCTGTGACATTTTTCCTGGGGGCAGGGGTAAGTCAGGGGGCAGTGAGGCTGACACAGACAC--AGAAGGACAGGTGACACCTCTGTGGACCAATGGTCTGGAATTGTCTTC-CT-GTCCTCTGAATATGAGCTCTCTCTTGGGCTTCCAGAAGTTACTGGACCTTGAGCAACTTTGATCAAGATTCCCATGTGCTCCTTGTTTTTCTTCTGGCCAATGAGTGGCTTCTATCTGTGGGGACAGATAGCTGAGCATCCCGAGGTTTATCACATGGTCAGCTGCTCCACTGTGGCTTTATGTGCCCAGGCAGGTCCTTCCTGTCTCCATAGGGCTCCTTTCTCTTACTCTGGTCAGAGCTCCGCATAGCCCTGGCAGCCCCTGACTCCCTCATCCTAGGGACAGGGAATAGGGCCTTGCAAGGAGTAGACCCAGTTCCAAGTTGGATATGTTGAGTCAGTTTCTAGTGAGCTGAACTTCATGGCATTGCTCTTGATAAACACAAGATCAAGATCAAATTCAGAGAACCCCTCAGGCAAAAGCTTTCACCATGCTTCACTCCCAAAGAAAGCACCCCTTGAGGGGTGTTCCAATACAATTTGTGCAGAGAGAAGCCAG-TAATGTGGCCCTTTCTTCACCTCAGTAAGAAAAGCTTGGCCCTAGCCCTCACAGTTTGAAAAGAGTGTCCTCCTATTAC-AGGCATGGGTATGTATTGGGACTTCTGTGTCCACATTTCACCTGCATTCTCAACTCTCAGGGACCACAGCAGGTCTGAGAGATTCTGCCTGTCTTTCTGACACACATCGGGTCAACCCTGTGCACTGACTGATGTCTTAGGACTCAGATTCGGGGTTGCCATGAGCTCACTGTCATTTTACCTTCTCAGTACTTTTCCCTTGCTCTGATCTCACCTGCCACATTCACTTTAAGAATGCACATTTCTAGATTATTGATTTTCCAACTGAGTTGTCCCGAGGGCTGATGTTCTGTAAACAGTTATTTCATTTTCTCTGTTCAAAGATGGTTTGTACCCACCATCTTCATGTAACAGTTTCTTGGTCACTTACCATGTGAATATGCAGTCTCTGGGCATGGAGTCCCCTGGACTCTCAATATCTTGTGTCCTGTTTTGCCACCTGATCCTAGTTAGGACAGGCACTGAAAATCAACACCAATGACGTATTGTTACCCTGAGAGAAAATGTCTTGCTTAAGTGTAGAATAACATTTTCTGTTGTCTCTTGTCACCCCTCCTAGCCTTTTCCCCACAATCCCACAGTCATGTTGATGCATGCTGAAGGGTGTTATGCCCCACTCTGTTCCTCCCACACTGACCGGCTTTTCTCACCCATCAGCTCTGAAGTACAAGAGGCTCCTGGACTTCAAGGTGCTCTGCAAGCTCCTCACCTGTATCTGCCTCCCAGTTTCCACAGTGCCCTTTCATGGCCTTTCTCCTGG---ACATACGAAGTGTGCTTCTCAGAGGAGTTTTACTTAGTGGAATTATCTGTCTCTTAAAGTGTAATCTGTA----TCTTTTGAATG---AAAAAAAAAAAGACCTACATTTGTTCTCTCTGGTATGCAGACACCAGACTCTTTTGTGACCCC----TGAAATCAGTTTCTCTGTTTCTGATGAACTCTGGAGGTTTTGTCACTGCTGCTGCACTGCTTTACTTGATTCCAGGAATTCGTCCTTTGTCCTCTGTGGAAGTTTTAGTTCAGGTCTCATTTTTTTCCCTTAAGCACAAGACCCCTCCCTTAATGTAACACCACACGTTCTCCAGCGCAGGCCATCTGTTCTATTGAAGCGATTCCAACAGCTTCTGCAATTAACTTGTCaagagaaggaagaaaagaaagaaatgaaaTGGTCAGGTATCCCTTGAAGATTCTGATGGTCACACAGAGGGAAAG
s panTro5.chr6             29733114 2252 + 175400573 ttcctgagctcaagagatcccctccaccccgatcccacaaattgctgggattacagggatgagtcgccgtgcccagccaaggatttgcatttta-aagatcactactgtgcacttaaaattattaggataatagatctcgtgtcaagaattcttaccacaataaaGCAAAATTCACACACA-AAAAAAGAATAAGCAAGGATGGATTCCAGTCCCCAGTCCTCAAATGAAGGGTTGCACTGTCCTGATAATGTTCTTTCCCTTGGGGAAAACACATCTAAAATCCTTGCAAAAACTCCTCCGAATTagagagatgagaaagagagtcagatgaagagagaACACAGTTCTCATCTTACCTGTGACATTTTTCCTGGGGGCAGGGGTAAGTCAGGGGGCAGTGAGGCTGACACAGACAC--AGAAGGACAGGTGACACCTCTGTGGACCAATGGTCTGGAATTGTCTTC-CT-GTCCTCTGAATATGAGCTCTCTCTTGGGCTTCCAGAAGTTAATGGACCTTGAGCAAGTTTGATCAAGATTCCCATGTGCTCCTTGTTTTTCTTCTGGCCAATGAGTGGCTTCTATCTGTGGGGACAGATAGCTGAGCATCCCGAGGTTTATCACATGGTCAACTGCTCCACTGTGGCTTTATGTGCCCAGGCAGGTCCTTCCTGTCTCCATAGGGCTCCTTTCTCTTACACTGGTCAGAGCTCCGCATAGCCCTGGCAGCCCCTGACTCCCTCATCCTAGGGACAGGGAATAGGGCCTTGCAAGGAGTAGACCCAGTTCCAAGTTGGATATGTTGAGTCAGTTTCTAGTGAGCTGAACTTCATGGCATTGCTCTTGATAAACACAAGATCAAGATCAAATTCAGAGAACCCCTCAGGCAAAAGCTTTCACCATGCTTCACTCCCAAAGAAAGCACCCCTCGAGGGGTGTTCCAATACAATTTGTGCAGAGAGAAGCCAG-TAATGTGGCCCTTTCTTCACCTCAGTAGGAAAAGCTCGGCCCTAGCCCTCACAGTTTGAAAAGAGTGTCCTCCTATTAC-AGGCATGGGTATGTATTGGGACTTCTGTGTCCACATTTCACCTGCAGTCTCAACTCTCAGGGACCACAGCAGGTCTGAGAGATTCTGCCTGTCTTTCTGACACACATCGGGTCAACCCTGTGCACTGACTGATGTCTTAGGACTCAGATTCGGGGTTGCCATGAGCTCACTGTCATTTTACCTTCTCAGTACTTTTCCCTTGCTCTGATCTCATCTGCCACATTCACTTTAAGAATGTACATTTCTAGATTATTGATTTTCCAACTGAGTTGTCCCGAGGGCTGATGTTCTGTAAACAGTTATTTCATTTTCTCTGTTCAAAGATGGTTTGTACCCACCATCCTCATGTAACAGTTTCTTGGTCACTTACCATGTGAATATGCAGTCTCTGAGCATGGAGTCCCCTGGACTCTCAATATCTTGTGTCCTGTTTTGCCACCTGATCCTAGTTAGGACAGGCACTGAAAATCAACACCAATGACGTATTGTTACCCTGAGAGAAAATGTCTTGCTTAAGGGTAGAATAACATTTTCTGTTGTCTCTTGTCACCCCTCCTAGCCTTTTCCCCACAATCCCACAGTCATGTTGATGCATGCTGAAGGGTGTTATGCCCCACTCTGTTCCTCCCACACTGACCGGCTTTTCTCACCCATCAGCTCTGAAGTACAAGAGGCTCCTGGACTTCAAGGTGCTCTGCAAGCTCCTCACCTGTATCTGCCTCCCAGTTTCCACAGTGCCCTTTCATGGCCTTTCTCCTGG---ACATACGAAGTGTGCTTCTCAGAGGAGTTTTACTTAGTGGAATTATCTGTCTCTTAAAGTGTAATCTGTA----TCTTTTGAATG---AAAAAAAAAAAGACCTACATTTGTTCTCTCTGGTGTGCAGACACCAGACTCTTTTGTGACCCC----TGAAATCAGTTTCTCTGTTTCTGATGAACTCTGGAGGTTTTGTCACTGCT-CTGCACTGCTTTACTTGATTCCAGGAACTCGTCCTTTGTCCTCTGTGGAAGTTTTAGTTCAGGTCTCATTTTTTTCCCTTAAGCACAAGACCCCTCCCTTAATGTAACACCACACGTTCTCCAGCGCAGGCCATCTGTTCTATTGAAGCGATTCCAACAGCTTCTGCAATTAACTTGTCaagagaaggaagaaaagaaagaaatgaaaTGGTCAGGTATCCCTTGAAGATTCTGATGGTCACACAGAGGGAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29962824 2251 + 173848474 ttcctgagctcaagagatcccctccaccccgaccccacaaattgctgggattacagggatgagtcgccgtgcccagccaaggatttgcatttta-aagatcactactgtgcacttaaaattattaggataatagatctcgtgtcaagaattcttaccacaataaaGCAAAATTCACACAC--AAAAAAGAATAAGCAAGGATGGATTCCAGTCCCCAGTCCTCAAATGAAGGGTTGCACTGTCCTGATAATGTTCTTTCCCTTGGGGAAAACACATCTAAAATCCTTGCAAAAACTCCTCCGAATTagagagatgagaaagagagtcagatgaagagagaACACAGTTCTCATCTTACCTGTGACATTTTTCCTGGGGGCAGGGGTAAGTCAGGGGGCAGTGAGGCTGACACAGACAC--AGAAGGACAGGTGACACCTCTGTGGACCAATGGTCTGGAATTGTCTTC-CT-GTCCTCTGAATATGAGCTCTCTCTTGGGCTTCCAGAAGTTAATGGACCTTGAGCAAGTTTGATCAAGATTCCCATGTGCTCCTTGTTTTTCTTCTGGCCAATGAGTGGCTTCTATCTGTGGGGACAGATAGCTGAGCATCCCGAGGTTTATCACATGGTCAACTGCTCCACTGTGGCTTTATGTGCCCAGGCAGGTCCTTCCTGTCTCCATAGGGCTCCTTTCTCTTACTCTGGTCAGAGCTCCGCATAGCCCTGGCAGCCCCTGACTCCCTCATCCTAGGGACAGGGAATAGGGCCTTGCAAGGAGTAGACCCAGTTCCAAGTTGGATATGTTGAGTCAGTTTCTAGTGAGCTGAACTTCATGGCATTGCTCTTGATAAACACAAGATCAAGATCAAATTCAGAGAACCCCTCAGGCAAAAGCTTTCACTATGCTTCACTCCCAAAGAAAGCACCCCTCGAGGGGTGTTCCAATACAATTTGTGCAGAGAGAAGCCAG-TAATGTGGCCCTTTCTTCACCTCAGTAAGAAAAGCTCGGCCCTAGCCCTCACAGTTTGAAAAGAGTGTCCTCCTATTAC-AGGCATGGGTATGTATTGGGACTTCTGTGTCCACATTTCACCTGCAGTCTCAACTCTCAGGGACCACAGCAGGTCTGAGAGATTCTGCCTGTCTTTCTGACACACATCGGGTCAACCCTGTGCACTGACTGATGTCTTAGGACTCAGATTCGGGGTTGCCATGAGCTCACTGTCATTTTACCTTCTCAGTACTTTTCCCTTGCTCTGATCTCATCTGCCACATTCACTTTAAGAATGTACATTTCTAGATTATTGATTTTCCAACTGAGTTGTCCCGAGGGCTGATGTTCTGTAAACAGTTATTTCATTTTCTCTGTTCAAAGATGGTTTGTACCCACCATCCTCATGTAACAGTTTCTTGGTCACTTACCATGTGAATATGCAGTCTCTGAGCATGGAGTCCCCTGGACTCTCAATATCTTGTGTCCTGTTTTGCCACCTGATCCTAGTTAGGACAGGCACTGAAAATCAACACCAATGACGTATTGTTACCCTGAGAGAAAATGTCTTGCTTAAGGGTAGAATAACATTTTCTGTTGTCTCTTGTCACCCCTCCTAGCCTTTTCCCCACAATCCCACAGTCATGTTGATGCATGCTGAAGGGTGTTATGCCCCACTCTGTTCCTCCCACACTGACCGGCTTTTCTCACCCATCAGCTCTGAAGTACAAGAGGCTCCTGGACTTCAAGGTGCTCTGCAAGCTCCTCACCTGTATCTGCCTCCCAGTTTCCACAGTGCCCTTTCATGGCCTTTCTCCTGG---ACATACGAAGTGTGCTTCTCAGAGGAGTTTTACTTAGTGGAATTATCTGTCTCTTAAAGTGTAATCTGTA----TCTTTTGAATG----AAAAAAAAAAGACCTACATTTGTTCTCTCTGGTGTGCAGACACCAGACTCTTTTGTGACCCC----TGAAATCAGTTTCTCTGTTTCTGATGAACTCTGGAGGTTTTGTCACTGCTGCTGCACTGCTTTACTTGATTCCAGGAACTCGTCCTTTGTCCTCTGTGGAAGTTTTAGTTCAGGTCTCATTTTTTTCCCTTAAGCACAAGACCCCTCCCTTAATGTAACACCACACGTTCTCCAGCGCAGGCCATCTGTTCTATTGAAGCAATTCCAACAGCTTCTGCAATTAACTTGTCAAGAGAAGGAAGAAAAGAAAGAAATGATATGGTCAGGTATCCCTTGAAGATTCTGATGGTCACACAGAAGGAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5772695 2250 +   6154872 ttcctgagctcaagagatcccctccaccccgaccccacaaattgctgggattacagggatgagtcgccatgcccagccaaggatttgcatttta-aagatcactactgtgcacttaaaattattaggataatagatctcgtgtcaagaattcttaccacaataaaGCAAAATTCACACACA-AAAAAAGAATAAGCAAGGATGGATTCCAGTCCCCAGTCCTCAAATGAAGGGTTGCACTGTCCTGATAATGTTCTTTCCCTTGGGGAAAACACGTCTAAAATCCTTGCAAAAACTCCTCCGAATTagagagatgagaaagagagtcagatgaagagagaACACAGTTCTCATCTTACCTGTGACATTTTTCCTGGGGGCAGGGGTAAGTCAGGGGGCAGTGAGGCTGACACAGACAC--AGAAGGACAGGTGACACCTCTGTGGACCAGTGGTCTGGAATTGTCTTC-CT-GTCCTCTGAATATGAGCTCTCTCTCGGGCTTCCAGAAGTTACTGGACCTTGAGCAAGTTTGATCAAGGTTCCCATATGCTCCTTGTTTTTCTTCTGGCCAATGAGTGGCTTCTATCTGTGGGGACAGATAGCTGAGCATCCCGAGGTTTATCACATGGTCAGCTGCTCCACTGTGGCTTTATGTGCCCAGGCAGGTCCTTCCTGTCTCCATAGGGCTCCTTTCTCTTACTCTGGTCAGAGCTCCGCATAGCCCTGGCAGCCCCTGACTCCCTCCTCCTAGGGACAGGGAATAGGGCCTTGCAAGGAGTAGACCCAGTTCCAAGTTGGATATGTTGAGT--GTTTCTAGTGAGCTGAACGTCATGGCATTGCTCTTGATAAACACAAGATCAAGATCAAATTCAGAGAACCCCTCAGGCAAAAGCTTTCACCATGCTTCACTCCCAAAGAAAGCACCCCTTGAGGGGTGTTCCAATACAATTTGTGCAGAGAGAAGCCAGTTAATGTGGCCCTTTCTTCACCTCAGTAAGAAAAGCTTGGCCCTAGCCCTCACAGTTTGAAAAGAGTGTCCTCCTATTAC-AGGCATGGGTATGTATTGGGACTTCTGTGTCCACATTTCACCTGCATTCTCACCTCTCAGGGACCACAGCAGGTCTGAGAGATTCTGCCTGTCTTTCTGACACACATCGGGTCAACCCTGTGCACTGACTGATGTCCTAGGACTCAGATTCGGGGTTGCCATGAGCTCACTGTCATTTTACCTTCTCGGTACTTTTCCCTTGCTCTGATCTCATCTGCCACATTCACTTTAAGAATGCACATTTCTAGATTATTGATTTTCCAACTGAGTTGTCCCGAGGGCTGATGTTCTGTAAACAGTTATTTCATTTTCTCTGTTCAAAGATGGTTTGTACCCACCATCCTCATGTAACAGTTTCTTGGTCACTTACCATGTGAATATGCAGTCTCTGGGCATGGAGTCCCCTGGACTCTCAATATCTTGTGTCCTGTTTTGCCGCCTGATCCTAGTTAGGACAGGCACTGAAAATCAACACCAATGACGTATTGTTACCCTGAGAGAAAATGTCTTGCTTAAGTGTAGAATAACATTTTCTGTTGTCTCTTGTCACCCCTCCTAGCCTTTTCCCCACAATCCCACAGTCATGTTGATGCATGCTGAAGGATGTTATGCCCCACTCTGTTCCTCCCACACTGACCGGCTTTTCTCACCCATCAGCTCTGAAGTACAAGAGGCTCCTGGACTTCAAGGTGCTCTGCAAGCTCCTCACCTGTATCTGCCTCCCAGTTTCCGCAGTGCCCTTTCACGGCCTTTCTCCTGG---ACATACGAAGTGTGCCTCTCAGAGCAGTTTTACTTAGTGGAATTATCTGTCTCTTAAAGTGTAATCTGTA----TCTTTTGAATG-----AAAAAAAAAGACCTACATTTGTTCTCTCTGGTATGCAGACACCAGACTCTTTTGTGACCCC----TGAAATCAGTTTCTCTGTTTCTGATGAACTCTGGAGGTTTTGTCACTGCTGCTGCACTGCTTTCCTTGATTCCAGGAATTCGTCCTTTGTCCTCTGTGGAAGTTTTAGTTCAGGTCTCATTTTTTTCCCTTAAGCACAAGACCCCTCCCTTAATGTAACACCACACGTTCTCCAGCGCAGGCCATCTGTTCTATTGAAGCGATTCCAACAGCTTCTGCAATTAACTTGTCAAGAGAAGGAAGAAAAGAAAGAAGTGAAATGGTCAGGTATCCCTTGAAGATTCTGATGGTCACACAGAGGGAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74473443 2245 + 122973662 ttcctgagctca-------------acctcgacctcccaaagtgctaggattacagggatgagcctccgtgcccagccaaggatttgcattttagaagatcactactgtgcacttaaaattattaggataatagatcttgtgtcaagaattcttactacagtaaagcaaaatttacacaca-aaaaaaGAATAAGCAAGGATGGATTCCAGCCCCCAGTCCTCAAATGAAGGGTTGCACTGTCCTGATAATGTTCTTTCCCTTGGGGAAAACACATCTAAAATCCTTGCAAAAACTCCTCCAAATTagagagatgagaaagagagtcagatgaagagagaACACAGTTCTCCTCTTACCTGTGACATTCTGCCTGGGGGCAGGGGTAAGTCAGGGGGCAGTGAGGCTGACACAGACAC--AGAAGGACAGGTGACACCTCTGTGGACCAATGATCTGGAATTGTCTTC-CCGGTCCTCTGACTATGAGCTCTCTGTTGGGCTTCCAGAAGTTACTGGACCTTGAGCAAGTTTGATCAAGATTTCCATGTGCTCCTTGTTTTCCTTCTGGCCAATGAGTGGCTTCTATCTGTGGGGACAGATAGCTGAGCATCCCATAGTTTATCACATGGTCAGCTGCTCCGCTGTGGCTTTATGTGCCCAGGCAGGTCCTTCCACTCTCCATCGGGCTCCTTTCTCTTACTCTGGTCAGAACTCCGCATTGCCCTGGCAGCCCCTGGCTCCCTCATCCTAGGGACAGGGAATAGGGCCTTGCAAAGAGTAGGCCCAATTGCAAGTTGGATATGTTGAGTCAGTTTCTAGCGAGCTGAACTTCATGGCATTGCTCTTGATAAACACAAGATCAAGATCAAATTCAGAGAACCCCTCAGGCAAAAGCTTTCACCATACTTCACTCCCAAAGAAAGCACCCCTTGAGGGGTGTTCCAATACAATGTGTGCAGAGAGAACCCAG-TAATGTGGCCCTTTCTTCACCTGAGTAAGAAAAGCTTGGCCCTAGCCCTCACAGTTTGAAAAGAGTGTCCCCCTGTTAT-AGGCATGGGTATGTATTGGGACTTCTGTGTCCACATTTCACCTGCATTCTTACCTCTCAGGGACCACAGCAGGTCTGAGAGATTCTGCCTGTCTTTCTGATGCATATCAGGTCAACCCTGTGCACTGACTGATGTCTTAGGACTCAGATTCGGGGTTGCCGTGAGCTCACTGTCATTTTACCTTCTGAGTACTTTTCCCTTGCTCTGATCTCATCTGCCACATTCACGTTAAGAATGCATATTTCTAGATTATTGATTTTCCAACTGAGTTGTCCTGACGGCTCATGTTCTGTAAACAGTTATTTTATTTTCTCTGTTCAAAGATGGTTTGTACCCACCATCCTCATGTAACAGTTTCTTGGTCACTTACCATGTGAATATGCAGTCTCTGGGCATGGAGTCCCCTGGACTCTCAATATCTTGTGTCCTGCTTTGCTGCCTGATCCTAGTTAGGACAGGCACTGAAAATCAACACCAATGACGTATTGTTACCCTGAGAGAAAATGGCTTGCTTAAGTGTAGAATAACATTTTCTGTTGTCTCTTGTCACCCCTCCTAGCCTTTTCCCCACAATCCCACAGTCATGTTGATGCGTGCTGAAGGGTGTTATGCCCCACTCTGTTCCTCCCACACTCACCGGCTTTTCTCACCCATCAGCTCTGAAGCACAAGAGGCTCCTGGACTTCAAGGTGCTCTGCAATCTCCTCACCTGTGTCTGCCTCCCAGTTCCCACAGTGCCCTTTCATGGCCTTTCTCCTGG---ACATACGAAGTGTGCTTCTCAGAGGAGTTTTACTTAGTGGAATTATCTGTCTCTTAAAGTGTAATTCGTA----TCTTTTGAATGAAAAAAAAAAAAAAGGCCTACATTTCTTCACTCTGGTATGCAGACACCAGACTCTTTTGTGACCCC----TGAAATCAATTTCTCTGTTTCTGATGAACTCTGGAGGTTTTGTCACTGCTGCTGCACTGCTTTACTTGATTCCAGGAATTTGTCCTTTGTCCTCTGTGGAAGTTTTATTTCAGGTCTCATTTTTTTCCCTTAAGCACAAGACCCCTCCCTTAATGTAACACCACACGTTCTCCAGCGCAGGCCATCTGTTCCATTGAAGCGATTCCAACAGCTTCTGCAATTCACTTGTCAAGAGAAGGAAGAGAAGAAAGAAATGAAATGGTCAGGTATCCCTTGAAGATTCTGATGGTCACACAGAGGGAAAG
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            58956 2233 -    242197 acctggagctcaagagatcccctccacctcagcctcccaaagtgctaggattacagggatgagccaccacacccagccAAGGATTTGCATTTTAATAGATCACtactgcacacttaaaattattaggataatatatcttgtgtcaagaagtcttaccacaataaaGCAAAATTCACATGCATAAAAAAGAATAACCAAGGATGGATTCCAGCCCCCAGTCCTCAAAGGAAGGGCTGCACTGTCCTGTTAATGTTCTTTCCCTGGGCAGAAACACATCTAAAATCCTTGAAAACATTCTTCTGAATTAGAGAGATAAAAAAGAGAACCAGATGTAAAGAGAACACAGTTC---TCTTATCTGTGACATTCTTGCTGGGGCAAGGGGCAGGTCAGGGGGCAGTGAGGCTC------AGAC--AGAAGGACAGGTGACCCCACTGTGGACCAATGGTCTGGAATCGTCTTCTCT-GTCCTCTGGCTCTGAGCTGTCTTTTGGACTTCCAGGAGTTGCTGGACCTTGAGCAAGTTTGATAAAGATTTCCACGTGTTCCTTGTTTTTCCTCTGGCCAATGAGTGGCTTCTAACTGTGAGGACAGACAGCTGAGCATCCCATGGTTTATCACATGGTCAGCTGCTCCACTGTGGCTTTATGTGCCCACGCAGGTCCTTCCTCTCTCCATCGGGCTCCTTTCTCTTACTCTGATCAGAGCTCGGTATAGCCCTGG----------CTCCCTCATCCTAGGGATAGGGAATAGGGTCTTGCGAGGAGGAGACCCAATTCCAAGTCAGATATGCTGAGTCAGTTTCTAGCAAGCTGAGCTTCATGGCATTGCTCTTGATAAACACAAGATCAAGATCAAATTCAGAGAGCCCTTCAGACAAAAGCTTTCACCATGCTTCCCTCCCAAAGAAAGCATCCCTTGAGGGGTGTTCCAATACAATTTGTAAAGAGAGAAGCCAG-TAAAGTTGCCCTTTCTTTACCTCAGTAAGAAAGGCCTGGCCATGGCCCTGATAGTTTGAAAAGAGTGCCCTTCTATCACAAGGCATGGGTATGTATTGGGACTTCTGTGACCACATTTCACCTGCATTTTCACCTGTCCGGGTCCACAGCAGTTATGAGAGATTCTATCTGTCTCTTCAACACACATCAGATCAACCTTGCGCACTGACTGATGTCTCAGGACTCAGATTTGGGGTTACCATGAGCTCACCATCACTTTAACTTCACAGTACTTTTCCCTTGATCTGATCTCATCTACCATATTCACTTTATGAATGCATATTTCTAGA-TACTGATTTTCAAACTGAGTGGTCCCAAAGGTTGATGTTCTGTATGCAATTATTTCATTTTCTTTGTTCAAAGA----TGGTAACAGTCATCCTCATATAACAGTTTCTTGGTCACTTACCATGTGAATATGCAGTCTCTGGGCATGGGGGCCTCTGGACTCTCAATCTCTTGTGTCCTGTTTTGCTGCCTGATCCTAGTTAGGACAGGCACTGAAAATCAAAACCAATGGTATATTGTTACCCTGTGAGAAGATGTCTTGCTTAACTGTAGAATAACATTTTTTGTTATCTCTTGTTACCCTTCCTGGCCTTTTCCCAACAATCCCACAGTCATGTTGATGTATGCTGCAGGGCGTTGTGCTCCACTCTATGCCTCCCACACTGACTGGCTTTTCTCATCCAGTAGCTCTGAAGCACGAGAGGCTGCTGGACTTAAGGGTGCTCTGAAAACTCCTCACCTATATCTGCCTCCCAATTCCCACAATGCCCTTTCATGGTCTTCCTCCTGAGGCACATAGGAAGTGTGCTTCTTAGAGGACTTTCACTTAGTGGAATTATCTGTCTCTTAAAATGTAATCTGTATTTTTTTTTT---------AACAAATAAAGGCCTGCATTTGTTCTTTCTGGTATGCAGACATCAGACTCTTTTTTGACCCT----TGAAATCAGTTTCTCTGTTTCTGATTAACTCTGGAGATTTTGTCACTGATGCTGGGCTGCTTTACTTGGTTCCAGGAATTCGCCCTTTGTCCTCTGTGGAAGCTTTAGTTCAGGTCTCA-TTTTTTCCCTTGAGCACAAGACCCCTCCCTTGATGTAACACCTCACATTCTCCAGTGCAGGCCATCTGTTCGGTCGAAGCAATTCCAACCGCTTCTGCAATTAAGCTGTCAAGAGAAGGAAGAAAGGAAAGGAATGAAATGATCTGGTTTCCCTTGAAGATTCTTATGGTCACAAAGAggaaaag
i saiBol1.JH378357         I 1 C 0
s cebCap1.NW_016108310v1      89024 2242 +    106389 ttttttagctcaagagatcccctccacctcagcctcccaaagtgccgggattacagggatgagccactgtacccagtcAAGGATTTGCATTTTAATAGATCACtactgcgcacttaaaattattaggataatatatcttgtgtcaagaagtcttaccacaatgaaGCAAAATTCACACACATAAAAAAGAATAACCAAGGATGGATTCCAGCCCGCAGTCCTCAAAGG-AGGGCTGCACTGTCCTGTTAATGTTCTTTCCCTGGGCAGAAACACACCTAAAATCCTTGAAAACATTCTTCTGAAATAGAGAGATGAAAAAGAGAACCAAATATAAAGAGAACACAGTTC---TCTTACCTGTGACATTCTTGCTGGAGGAAAGGGCAGGTC-GGGGGTGGTGAGGCTCACACAAAGAC--AGAAGGACAGGTGACACCTCTGTGGACTGATGGTCTGGAATTGTCTTCTCT-GTCCTCTGGCTATGAGCTGTGTTTTGGACTTCCAGGAGTTGCTGGACCTTGAGCAAGTTTGATTAAGATTTCCACGTGCTCCTTGTTTTTCCTCTGGCCAATGAGTGGCTTCTAACTGTGGGGACAGACAGCTGAGCATCCCATGGTTTATCACATGTTCAGCTGCTCCACTGTGGCTTTATGTGCCCCGGTAGGTCCTTCCTGTCTCCATCGGGCTCCTTTCTCTTACTCTGATCAGAGCTCAGCATAGTCCTGG----------CTCCCTCATCCTAGGGATAGGGAATAGGATCTTGTGAGGAGTAGACCCAATTCCAAGTCGCATATGCTGAGTCGGCTTCTAGCAAGCTGAACTTCATGGCATTGCTCTTGATAAGCACAAGACCAAGATCAAATTCAGAGAACCCTTTAGACAAAAGCTTTCACCATGCTTCACTCCCAAAGAAAGCACCCCTTGA-GGGTGTTCCAATACAATTTGTGCAGAGAGAATCCAG-TAAAGTTGCCCTTTCTTTACCTCAGTGAGAGAGGCCTGGCCCTGGCCCTGATAGTTTGAAAAGAGTGCCCCCCTATTACAAGGCATTGGTATGTATTGGGACTTCTGTGTCCACATTTCACCTGCATTATCACCTGTCAGGGACCACAGCAGGTATGAGAGATTCTGCCTGTCTTTTCGACACACATCAGATCAACCTTGTGCACTGACTGATGTCTCAGGACTCAGATTTGGGGTTGCCATGAGCTCACCATCACTTTAACTTCACAGCACTTTTCCCTTGATCTGATCTCATCTGCCACATTCACTTTATGAATGCATATTTCTAGA-TATTGATTTTCAAACTGAGTGGTCCCAAGGGCTGATGTTCTATATGCAATTATTTCATTTTCTTTGTTCAAAGACAGTTTGTAACAGTCATCCTCATGTAACAGTTTCTTGGTCACTTACCATGTGAATATATAGTCTCTGGGCATGGGGGCCTCTGGACTCTCAATCTCTTGTGTCCTGTTTTGCTGCCTGATCCTAGTTAGGACAGGCATTGAAAATCAAAACCAATGGCATATTGTTACCCTGTGAGAAGATGTCTTGCTTAACTGTAGAATAACATTTTTTGTTATCTCTTGCCACCCTTCCTGGCCTTTTCCCCACAATCCCACAGTCATGTTGATGCATGCTGCAGGGCGTTGTGCTCCACTCTATTCGTCCCACACTGACTGGCTTTTCTCATCCAGTAGCTCCGAAGCACAAGAGGCTGCTGGACTTAAGGGTGCTCTGAAAACTCCTCACCTATATCTGCCTTTCAGTTCCCGCAATGCCCTTTCATGGTCTCCCTCCTGAGGCACACGGGAAGTGTGCTTCTTAGGGGACTTTCACTTAGTGGGATTATCTGTCTCTTAAAATGTAATCTGTA--TTTATTTT---------AACAAATAAAGGCTTGCATTTGTTCTTTCTGGTATGCAGACATCATACTCTTTTGTGACCCTTTTGTGAAATTAGTTTCTCCGTTTCTGATGAACTCTGGAGATTTTGTCACTGATGCTGGGCTGCTTTACTTGGTTCCAGGATTCTGCCCTTTGTCCTCTGTGGAAGTTTTAGTTCAGGTCTCA-TTTTTTCCCTTGAGCACAAGACCCATCCCTTGATGTAACACCTCACATTCTCCAGCGCAGGCCATCTGTTCTTTCGAAGCGATTCCAACCGCTTCTGCAATTAAGCTGTCAAGAGAAGGAAGAAAGGAAAGAAATGAAATGATCTGGTTTCTCTTGAAGATTCTTATGGTCACAAAGAggaaaag
i cebCap1.NW_016108310v1   I 38 I 487
s aotNan1.NW_018509740v1     101509 2224 -    457564 acctggagctcaagagatcccctccacctcagcctcccaaagtgctgggattacagggatgagccaccatacccagtcAAGGATTTGCATTTTTAAAGATCACtactgtgcacttaaaattattaggataatttatctcgtgtcaagaagtcttaccacaataaaGCAAAATTCACACACATAAAAAAGAATAACCAAGGATGGATTCCAGCCCCCAGTCCTCAAAGGAAGGACTGCACTGTCCTGTTAATGTTCTTTCCCTGGGTGGAAACACATCTAAAATCCTTGCAAACATTCTTCTGAATTAGAGAGATGAAAAAGAGAACTAGATGTAAAGAGA--ACAATTC---TCTTACCTGTAACATTCTTGCTGAGGGAAGGGGCAGGTCAGGGGACAGTGAGACTC------AGACAAAGAAGGACAGGTGACACCTCTGTGGACCAATGGTCTGGAATCGTCTTCTCT-GTCCTCTGACTATGAGCTATCTTTTGAACTTCCAGGAGTTGCTGGACCTTGAGCAAGTTTGATTAAGATTTCCACGTGCTCCTTGTTTTTCCTCTGGCCAATGAGTGGCTTCTAACTGTGGGGACAGACAGCTGAGCATCCCATGGTTTATCACATGGTCAGCTGCTCCACCATGGCTTTATGTGCCCAGGCAGGTCCTTCCTCTCTCCATCAGGCTCCTTTCTCTTACTCTGATCAGAACTCAGCATAGCCCTGG----------CTCCCTCATCCTAGGGATAGGGAATAGGGTCTTGCAAGGAGTAGACCCAATTCCAAGTCGGATATGCTGAGTCAGTTTCTAGCAAGCTAAACTTCATGGCATTGCTCTTAATAAACACAAGATCAAGATCAAATTCAGAGAGCCCTTCAGACAAAAGCTTTCACCATGCTTCACTCCCAAACAAAGCACCCCTTGAGGGGTGTTCCAATACAATTTGTGCAGAGAGAAGCCAG-TAAAGTTGCCCTTTCTTTACCTCAGTAAGAAAAGCCTGGCCCTGGCCCTGATAGTTTGAAAAGAATGCCCCACTATTACAAGGCATGGGTATGTATTGGGACTTCTGTGTCCACATTTCACCTGCATTATCACCTATCAAGGACCACAGCAGGTATGAGAGATTCTACCTGTCTTTTCGACACACATCAGATCAACCTTGTGCACTGACTGATGTCTCAGGACTCAGATTTGGGGTTGCCATGAGCTCACCATCACTTTAACTTCATAGTACTTTTCCCTTGATCTTATCTCATCTGCCACACTCACTTTATG-ATGCACATTTCTAGA-TATTGATTTTCAAACTGAGTGGTCCCAAGGGCTGATGTTCTGTATGCAATTATTTCGTTTTCTTTGTTCAAAGATAGTTTGTAACAGTCATCCTCAAGTAACAGTTTCTTGGTCACTTACCATGTGAATACGCAGTCTCTGGGCATGGAGGCTTCTGGACTCTCAATCTCTTGTGTCCTGTTTTGCTGCCTGATCCTAGTTAGGACAGGCACTGATAATCAAAACCAATGGCATATTGTTACCCTGTGAGAAGATGTCTTGCTTAAATGTAGAATAACATTTTTTGTTATCTCTTGTCGCCCTTCCTGGCCTTTTCCCCACAATCCCACAGTCATGTTGATGCACGCTGCAGGGCGTTGTGCTCCACTCTATTTCTCCCACATTGACTGGCTTTTCTCATCCAGTGGCTCTGAAGCACAAGAGGCTGCTGGACTTAAGGGTGCTCTGAAAACTCCTCACCTGTATTTGCCTCCCAGTTCCCACAATGCCCTTTCACTGTCTCCCTCCTGAGGCACATAGGAAGTGTGCTTCTTAGAGGACTTTCACTTAGTGGAATTATCCGTCTCTTAAAATGTAATCTGTA----TTTTTT---------AACAAATAAAGGCCTGCATTTGTTCTTTCTGGTATGCAGACATCAGACTCTTTTGTGACCC-----TGAAATCAGTTTCTCTGTTTCTGATGAACTCTGGAGATTTTGTCACTGATGCTGGGCTGCTTTACTTGGTTCCAGGAATTCACCCTTTGTCCTCTGTGGAACTTTTAGTTCAGGTCTCA-CTTTTCCCCTTGAGCACAAGACCCCTCCCTTGATTTAACACCACACATTCTCCAGCACAGGCCATCTGTTCTGTCTAAGTGATTCCAACAGCTTCTCCAATTAAGTTGTCAAG-------AGAAACGAAAGAAATGAAATGGTCTGGTTTCCCTTGAAGATTCTTATGGTCACAAAGAggaaaag
i aotNan1.NW_018509740v1   I 1 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376    1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=1911.000000
s hg38.chr6_GL000254v2_alt   761261 1 +   4827813 A
s panTro5.chr6             29735366 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29965075 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5774945 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74475688 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            61189 1 -    242197 a
i saiBol1.JH378357         C 0 C 0
s aotNan1.NW_018509740v1     103733 1 -    457564 a
i aotNan1.NW_018509740v1   C 0 I 484
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e cebCap1.NW_016108310v1      91266 487 +    106389 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376 1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=4795.000000
s hg38.chr6_GL000254v2_alt   761262 4 +   4827813 GCCT
s panTro5.chr6             29735367 4 + 175400573 GCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29965076 4 + 173848474 GCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5774946 4 +   6154872 GCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74475689 4 + 122973662 GCCT
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            61190 4 -    242197 tcct
i saiBol1.JH378357         C 0 I 480
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     103734 484 -    457564 I
e cebCap1.NW_016108310v1      91266 487 +    106389 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376 1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=1314013.000000
s hg38.chr6_GL000254v2_alt   761266 1427 +   4827813 TGTGTGTGGGACCTTGAGTGTCAGGCCACCTCTTCTCCAAGATGGGCAGGGTTTGGTCCATCTTCCCAAATGGAGCTAAAGATCCATGCTGGAAATTTCCCTGCTCTAGAACAGACAGCTTGGAGTGATGAGTCATGATGAAGACCTTTCTATTGATTCTTCATTGCTGGGGTTTCCAACCTACAGGGATGAGGACTGATGCATCTGTGAATGAGCATGCCATTCCCTGGCAGACACCTGAGTTCATTGCTTGCTAAGAACTTGGTTCTACATCACTTCTTCTGAAATAGAAGGGCCTGCTGGCTTGTCAGCAAATAAGCAAAGTTTGGCTTGCTGTTTGGAGAAGCCTAATTTTATCAGTGTCAGCTCAACATTTAAATTTGAAAAAGGAAATTCAGCATAAGCAAGGTTCACATTCAGGTGTATGCTTAAATTCTAGGTATTCATCTCATTCATGAACTCAATCAGTAGCCAGAGTTTCCAGGATGCCTAGGGATTGCCCCCAAGGATCAGTGCTGGTTTGCAGCTACAATACCAGAGTTTGACTCTGATGCCACACTCTGAGGGCAGTCCTCACCTATTGTGATAAAACCCTTCAGGTCCTGTGGCGTAGCCATGGCCCATCCTGGACATGTTTAACTTCACCCACCAGGCACCCATCTCACTAAGAAGACTTTGATGTTCATGAGAAATGAATTTCTGCTGCCTACAGGAAGGAGATAGGACTTCTCTGAACCGTTGAGGCTCCTGCTACCTCCAGAGCAGGCAACAAAGATTAGACCCTGCCAGGAGGGAAGCACACCAGATAAGGATGGAGAATTATCTTGACAAGGGGCATGAAAAAAATTACTGGATGAC-AAAAAAAATACATCACCAAAGATCAATAAAACATTTGTAGAACACCCCACGGAGATGTGATCTGCCCACTGTACAGATCAGAAGAGCTTCCTTTC-TTCTTCTGCGTCAGAAAATATCTGCTTGCTGGTCAATGTCCAGAGGATGATGTGAAGATGGGAAAGGACATTTTCCCTGGACACCATTTCTGAAGTTACATCTCTGTGTGTGCTTTCATTGGTGATGCCATTTCTCTTTGCTTTCTCTTCTTTTCTTGGGAAGACTTCTCTGTCTACATTTGTATATTTATTTGGCTGACTTTCCCTGAATTTGCTGCCTGACTGAGTAATTTATTTCAAAATAACTACATGGCAAGCTGTTTTATGCTGTTTAACTAAATCCATTGATTGAAGCATTTTCTGACACCTGGCCGTCCACATGGAGATTTCTCTTTTCCAGTCTTCCTAGTCTGGAAAAGACGTCACCATCCACAGGAAGTGTTTGTCATTGTACCCAATCTGGTCTCAGTAGCACCATTTACATACCAATAGTGTAAATCTCTGTGTTTCTTATAGACACAtgatatggtttgg
s panTro5.chr6             29735371 1427 + 175400573 TGTGTGTGGGACCTTGAGTGTCAGGCCACCTCTTCTCCAAGATGGGCAGGGTTTGGTCCATCTTCCCAAATGGAGCTAAAGATCCATGCTGGAAATTTCCCTGCTCTAGAACAGACAGCTTGGAGTGATGAGTCATGATGAAGACCTTTCTATTGATTCTTCATTGCTGGGGTTTCCAACCTACAGGGATGAGGACTGATGCATCTGTGAATGAGCATGCCATTCCCTGGCAGACACCTGAGTTCATTGCTTGCTAAGAACTTGGTTCTACATCACTTCTTCTGAAATAGAAGGGCCTGCTGGCTTGTCAGCAAATAAGCAAAGTTTGGCTTGCTGTTTGGAGAAGCCTAATTTTATCAGTGTCAGCTCAACATTTAAATTTGAAAAAGGAAATTCAGCATAAGCAAGGTTCACATTCAGGTGTATGCTTGAATTCTAGGTATTCATCTCATTCATGAACTCAATCAGTAGCCAGAGTTTCCAGGATGCCTAGGGATTGCCCCCAAGGATCAGTGCTGGTTTGCGGCTACAATACCAGAGTTTGACTCTGATGCCACACTCTGAGGGCAGTCCTCACCTATTGTGATAAAACCCTTCAGGTCCTGTGGCATAGCCATGGCCCATCCTGGACATGTTTAACTTCACCCACCAGGCACCCATCTCACTAAGAAGACTTTGATGTTCATGAGAAATGAATTTCTGCTGCCTACAGGAAGGAGATAGGACTTCTCTGAACCGTTGAGGCTCCTGCTACCTCCAGAGCAGGCAACAAAGATTAGACCCTGCCAGGAGGGAAGCACACCAGATAAGGATGGAGAATTATCTTGATAAGGGGCATGAAAAAAATTACTGGATGAC-AAAAAAAATACATCACCAAAGATCAATAAAACATTTGTAGAACACCCCACGGAGATGTGATCTGCCCACTGTACAGATCAGAAGAGCTTCGTTTC-TTCTTCTGCATCAGAAAATATCTGCTTGCTGGTCAATGTCCAGAGGATGATGTGAAGATGGGAAAGGACATTTTCCCTGGACACCATTTCTGAAGTTACATCTCTGTGTGTGCTTTCATTGGTGATGCCATTTCTCTTTGCTTTCTCTTCTTTTCTTGGGAAGACTTCTCTGTCTACATTTGTATATTTATTTGGCTGACTTTCCCTGAATTTGCTGCCTGACTGAGTAATTTATTTCAAAATAACTACATGGCAAGCTATTTTATGCTGTTTAACTAAATCCATTGATTGAAGCATTTTCTGACACCTGGCCGTCCACATGGAGATTTCTCTTTTCCAGTCTTCCTAGTCTGGAAAAGACATCACCATCCACAGGAAGTGTTTGTCATTGTACCCAATCTGGTCTCAGTAGCACCATTTACATACCAATAGTGTAAATCTCTGTGTTTCTTATAGACACATGATATGGTTTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29965080 1427 + 173848474 TGTGTGTGGGACCTTGAGTGTCAGGCCACCTCTTCTCCAAGATGGGCAGGGTTTGGTCCATCTTCCCAAATGGAGCTAAAGATCCATGCTGGAAATTTCCCTGCTCTAGAACAGACAGCTTGGAGTGATGAGTCATGATGAAGACCTTTCTATTGATTCTTCATTGCTGGGGTTTCCAACCTACAGGGATGAGGACTGATGCATCTGTGAATGAGCATGCCATTCCCTGGCAGACACCTGAGTTCATTGCTTGCTAAGAACTTGGTTCTACATCACTTCTTCTGAAATAGAAGGGTCTGCTGGCTTGTCAGCAAATAAGCAAAGTTTGGCTTGCTGTTTGGAGAAGCCTAATTTTATCAGTGTCAGCTCAACATTTAAATTTGAAAAAGGAAATTCAGCATAAGCAAGGTTCACATTCAGGTGTATGCTTGAATTCTAGGTATTCATCTCATTCATGAACTCAATCAGTAGCCAGAGTTTCCAGGATGCCTAGGGATTGCCCCCAAGGATCAGTGCTGGTTTGCGGCTACAATACCAGAGTTTGACTCTGATGCCACACTCTGAGGGCAGTCCTCACCTATTGTGATAAAACCCTTCAGGTCCTGTGGCATAGCCATGGCCCATCCTGGACATGTTTAACTTCACCCACCAGGCACCCATCTCACTAAGAAGACTTTGATGTTCATGAGAAATGAATTTCTGCTGCCTACAGGAAGGAGATAGGACTTCTCTGAACCGTTGAGGCTCCTGCTACCTCCAGAGCAGGCAACAAAGATTAGACCCTGCCAGGAGGGAAGCACACCAGATAAGGATGGAGAATTATCTTGATAAGGGGCATGAAAAAAATTACTGGATGAC-AAAAAAAATACATCACCAAAGATCAATAAAACATTTGTAGAACACCCCACGGAGATGTGATCTGCCCACTGTACAGATCAGAAGAGCTTCCTTTC-TTCTTCTGCGTCAGAAAATATCTGCTTGCTGGTCAATGTCCAGAGGATGATGTGAAGATGGGAAAGGACATTTTCCCTGGACACCATTTCTGAAGTTACATCTCTGTGTGTGCTTTCATTGGTGATGCAATTTCTCTTTGCTTTCTCTTCTTTTCTTGGGAAGACTTCTCTGTCTACATTTGTATATTTATTTGGCTGACTTTCCCTGAATTTGCTGCCTGACTGAGTAATTTATTTCAAAATATCTACATGGCAAGCTGTTTTATGCTGTTTAACTAAATCCATTGATTGAAGCATTTTCTGACACCTGGCCGTCCACATGGAGATTTCTCTTTTCCAGTCTTCCTAGTCTGGAAAAGACATCACCATCCACAGGAAGTGTTTGTCATTGTACCCAATCTGGTCTCAGTAGCACCATTTACATACCAATAGTGTAAATCTCTGTGTTTCTTATAGACACATGATATGGTTTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5774950 1428 +   6154872 TGTGTGTGGGACCTTGAGTGTCAGGCCACCTCTTCTCCAAGATGGGCGGGGTTTGGTCCATCTTCCCAAATGGAGCTAAAGATCCATGCTGGAAATTTCCCTGCTCTAGAACAGACAGCTTGGAGTGATGAGTCATGATGAAGACCTTTCTATTGATTCTTCATTGCTGGGGTTTCCAACCTACAGGGATGAGGACTGATGCATCTGTGAATGAGCATGCCATTCCCTGGCAGACACCTGAGTTCATTGCTTGCTAAGAACTTTGTTCTACATCACTTCTTCTGAAATAGAAGGGCCTGCTGGCTTGTCAGCAAATAAGCAAAGTTTGGCTTGCTGTTTGGAGAAGCCTAATTTTATCAGTGTCAGCTCAACATTTAAATTTGAAAAAGGAAATTCAGCATAAGCAAGGTTCACATTCAGGTGTATGCTTGAATTCTAGGTATTCATCTCATTCATGAACTCAATCAGTAGCCAGAGTTTCCAGGATGCCTAGGGATTGCCCCCAAGGATCAGTGCTGGTTTGCGGCTACAATACCAGAGTTTGACTCTGATGCCACACTCTGAGGGCAGTCCTCACCTATTGTGATAAAACCCTTCAGGTCCTGTGGCGTAGCCATGGCCCATCCTGGACATGTTTAACTTCACCCACCAGGCACCCATCTCACTAAGAAGACTTTGATGTTCATGAGAAATGAATTTCTGCTGCCTACAGGAAGGAGATAGGACTTCTCTGAACTGTTGAGGCTCCTGCTACCTCCAGAGCAGGCAACAAAGATTAGACCCTGCCAGGAGGGAAGCACACCAGATAAGGATGGAGAATTATCTTGATAAGGGGCATGAAAAAAATTACTGGATGACAAAAAAAAATACATCACCAAAGATCAATAAAACATTTGTAGAACACCCCATGGAGATGTGATCTGCCCACTGTACGGATCAGAAGAGCTTCCTTTT-TTCTTCTGCGTCAGAAAATATCTGCTTGCTGGTCAATGTCCAGAGGATGATGTGAAGATGGGAAAGGACATTTTCCTTGGACATCATTTCTGAAGTTACATCTCTGTGTGTGCTTTCGTTGGTGATGCCATTTCCCTTTGCTTTCTCTTCTTTTCTTGGGAAGACTTCTCTGTCTACATTTATATATTTATTTGGCTGACTTTCCCTGAATTTGCTGCCTGACTGAGTAATTTATTTCAAAATAACTACATGGCAAGCTGTTTTATGCTGTTTAACTAAATTCATTGATTGAAGCATTTTCTGACACCTGGCCGTCCACATGGAGATTTCTCTTTTCCAGTCTTCCTAGTCTGGAAAAGACGTCACCATCCACAGGAAGTGTTTGTCATTGTACCCAATCTGGTCTCAGTAGCACCATTTACATACCAATAGTGTAAATCTCTGTGTTTCTTATAGACACAtgatatggtttgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74475693 1428 + 122973662 TGTGTGTGGGACCTTGAGTGTCAGGCCACCTCTTCTCCAAGATGGGCAGGGTTTGGTCCATCTTCCCAAACGGAACTAAAGATCCATGCTGGAGATTTCCCTGCTCTAGAACAGACAGCTTGGAGTGATGAGTCATGATGAAGGCCTTTCTATTCATTCTTCATTGCTGGGGTTTCCAACCTACAGGGATGAGGACTGATGCATCTGTGAATGAGCATGCCTTTCCCTGGCAGACACCTGAGTTCATTGCTTGCTAAGAACTCGGTTCTACATCACTTCTTCTGAAATAGAAGGGCCTGCTGGCTTGTCAGCAAATAAGCAAAGTTTGGCTTGCTGTGTGGAGAAGCCTAATTTTATCAGTGTCAGCTCAACATTTAAATTTAAAAAAGGAAATTCAGCATAAGAAAGGTTCACATTCAGGTGTATGCTTGAATTCTAGGTATTTATCTCATTCATGAACTCAATCAGTAGGCAGAGTTTCCAGGATGCCTAGGGATTGCCCCCAAGGATCAGTGCAGGTTTGCGGCTACAATACAGGAGTTTGACTCTGATGCCACACTCTGAGGGCAGTCCTCACCTACTGTGATAAGACCCTTCAGGTCCTGTGGCGTAGCCATGGCCCATCCTGGACATGTTTAACTTCACCCACCAGGCACCCATCTCACTAAGGAGACTTTGATGTTCATGAGAAATGAATTTCTGCTGCCTACAGGAAGGAGATGGGACTTCTCTGAAATGTTGAGGTTCCTGCTACCTCCAGAGCAGGCAACAAAGATTAGACCCTGCCAGGAGGGAAGCACACCAGATAAGGACGGAGAATTATCTTGATAAGGGCCATGAAAAAAATTAGTGGATGAC-AAAAAAAATACATCACCAAAGATCAATAAAACATTTGTAGAACACCCCACAGAGATGTGATCTGCCCACTGTACAGATCAGAAGAGCTTCCTTTTGTTCTTCTGCATCAGAAAATATCTGCTTGCTGGTCAGTGTCCAGAGGATGATGTGAAGATGGGAAAGGACATTTTCCTTGGACACCATTTCTGAAGTTACATCTCTGTGTGTGCTTTCATTGGCGATGCCATTTCCCTTTGCTTTCTCTTCTTTTCTTGGGAAGACTTCTCTTTCTACATTTGTATATTTATTTGGCTGTCTTTCCCTGAATTTGCTGCCTGACTGAGTAATTTATTTCAAAATAACTACATGGCAAGCTGTTTTATGCTGTTTAACTAAATCCATTGATTGAAGCATTTTCTGACACCTGGCCGTCCACATGGAGATTTCTCTTTTCCAGTCTTCCTAGTCTGGAAAACACGTCACCATCCACAGGAAGTGTTTGCCATCATACCCAATCTGGTCTCAGTAGCATCATTTACATACCAATAGTGTAAATCTCTGTGTTTCTTATAGACACAtgatatggtttgg
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            61194  480 -    242197 I
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     103734  484 -    457564 I
e cebCap1.NW_016108310v1      91266  487 +    106389 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376    1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=461467.000000
s hg38.chr6_GL000254v2_alt   762693 1715 +   4827813 atttgtgtccccgcccaaatctcatatcgaattggag---aagcctggtgggaggtaactggatcatggaggcagatttcctccttgctgttctcatgacagtgagtgagttctcatgagatctgatggttgaaaattgtgtgaccttcccccttcactctctctctttctcctgccaccatgtgaagaaggtgcttgcttccccttggtgttctgccataaatgtaagtttcctgaggcctcccagttattcttcctgttaaacctgtggaactataagtcagttaaacctcttttcttcataaattagccagtttcaggtagttctttatagcagtgtggtaatggacataatGGACTAACACTATCTTGTTCTCTGGTATCTTTATTAAAGCATTTTCAGTGTCTGCTCATGCTCTCTTCTTTAACAATAATGTGCTTTCTGTGTTTATTCCTGTGACATGCAGCAGCCAGCACTGCCAGCCCCCATGGCTCTGCATGTCCCCACTGAGGTCCTGTTCCAGTGTCTGCAAGTCCCTCCTGATATTAACATATAACCACTGGCAATTATCTCAACATTTCTATTTTCTAAATAATTTTCATTTTAAAATCCTCCAGTACCAAAAGTTGTTTAAGACAAAAACAAATAGTTAATTTCCAGTTAGCAAAGCTTTCTCTTTGTATTAAGTATGCTTTAATCACATATTCAAAAACATGTGGTTTCTATTTTAATAACTTCTAAAAAATAATTTGGATTTTGTTTTGGGTGGATTATATTGTATGAAATCCCTTGTCTTTTCATATTTTGACCATTGTATTTTAATGttttgtagcatgtcttagaatgaatgcaggcattcctttggagcatatatccaacgaaaaggagtgaaattactgggtcaGCAACTTCTTTTTTTTTTT---AATATTTGATTAAATGAAATGTTTTACATCTCTCTGTTCCTCTTGCTCTTCTGTACATTATCATTCTTGTGGCtttttaaattcaacttttaatttttagataattgtagattcacatgtagatgcaagaaataatgcaaacagatcccatacccagttttccagtggtaacatcatgcaaaattatattataatatttttaatgtgggtgtttatcactgtaaacttctctcttagaactattttgctgcatcccataagtttagggatgttgtatttccatttgtgtttgtctcaagatagtttttaaatttgccttttggtttcttctttgacatactgattgttcaacatgatattatttaattttcaaaaatttgtaaattttccaattttcttcctgttactaacttttaatttattaccatggtggtcagaaaacagacttgatatgattttaatcttcttaaatttgttaagatttgttttgtggcttaatatatgatctatcttagagaatgttctgtgtatgcttgagaagaatggtcattctgctgctgttgaatgtaatgtcccataaatgtctcttaggacctcttggtctatcgtgttgttcaaatccaaagtttcctttttgattttgtgtctggacaatctatccgttgttgaaagtggggtataaaagtttcctgctaatgttgtgttgctgtctgtttctcccttcattgtgttcatattttcgttacatatttaggtgctctgaacttgggtgcacatacacttaaaattgttat
s gorGor5.CYUI01015250v1    5776378 1718 +   6154872 atttgtgtccccgcccaaatctcatatcgaattggaggagaagcctggtgggaggtaactggatcatggaggcagatttcctccttgctgttctcatgacagtgagtgagttctcatgagatctgatggttgaaaattgtgtgaccttcccccttcgctctctctctttctcctgccactatgtgaagaaggtgcttgcttccccttggtgttctgccataattgtaagtttcctgaggcctcccagttattcttcctgttaaacctgtggaactataagtcagttaaaccttttttcttcataaattagccagtttcaggtagttctttatagcagtgtggtaatggacataatGGACTAACACTATCTTGTTCTCTGGTATCTTTATTAAAGCATTTTCAGTGTCTGCTCATGCTCTCTTCTCTAACAATAATGTGCTTTCTGTGTTTATTCCTGTGACATGCAGCAGCCAGCACTGCCAGCCCCCTTGGCTCTGCATGTCCCCACTGAGGTCCTGTTCCAGTGTCTGCAAGTCCCTCCTGATATTAACATATAACCACTGGCAATTATCTCAACATTTCTATTTTCTAAATAATTTCCATTTTAAAATCCTCCAGTAGCAAAAGTTGTTTAAGACAAAAACAAGTAGTTAATTTCCAGTTAGCAAAGCTTTCTCTTTGTATTAAGTATGCTTTAATCACATATTCAAAAACATGTGGTTTCTATTTTAATAACTTCTAAAAAATAATTTGGATTTTGTTTTGGGTGGATTATATTGTATGAAATCCCTTGTCTTTTCATATTTTGACCATTGTATTTTAATGttttgtagcatgtcttagaatgaatgcaggcattcctttggagcatatatccaacgaaaaggagtgaaattactgggtcaGCAACTTCTTTTTTTTTTT---AATATTTGATTAAATGAAATGTTTTACATCTCTCTGTTCTTCTTGCTCTTCTGTACATTATCATTCTAGTGGCtttttaaattcaacttttaatttttagataattgtagattcacatatagatgcaagaaataatgcaaacagatcccatacccagttttccagtggtaacaccatgcaaaattatattataatatttttaatgtgggtgtttatcactgtaaacttctctcttagaactattttgctgcatcccataagttcagggatgttgtatttccatatgtgtttgtctcaagatagtttttaaatttgccttttggtttcttctttgacatactgattgttcaacatgatattatttaattttcaaaaatctgtaaattttccaattttcttcctgttactaacttttaatttattaccatggtcgtcagaaaacagacttgatatgattttaatcttcttaaatttgttaagatttgttttgtggcttaatatatgatctatcttagagaatgttctgtgtatgcttgagaagaatggtcattctgctgctgttgaatgaaatgtcccataaatgtctcttaggaccttttggtctatcgtgttgttcaaatccaaagtttcctttttgattttctgtctggacaatctatccgttgttgaaagtggggtataaaagtttcctgctaatgttgtgttgctgtctgtttctcccttcattgtgttcatattttcgttacatatttaggtgctctgaacttgggtgcacatacacttacaattgttat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74477121 1721 + 122973662 atttgtgtccccgcctaaatctcatatcgaattggaggagaagcctggtggaaggtatagggatcacggaggcagatttccaccttgctgttctcatgacagtgagtgagttctcatgagatctgatggttgaaaagtgtgtgaccttcccccttcactctctctctttctcctgccaccgtgtgaagaaggtgcttgcttccccttggtgttctgccataattgtaagtttcctgaggcctcccagttattcttcctgttaaacctgtggaactatgagtcagttaaacctcttttcttcataaattagccagtttcaggtagttctttatagcagtgtgataacgaacataatGGACTAACACTATCTTGTTCTCTGGTATCTTTATTAAAGCATTTTCGGTGTCTGCTCATGCTCTCTTCTCTAACAGTGATGTGCTTTCTGTGTTTATTCCTGTGACATGCAGCAGCCAGCACTGCCAGCCCCCATGGCTCTGCATGTCCCCACTGAGGTCCTGTTCCAGTGTCTGCAAGTCCCTCCTGATATTAACATATAACCACTGGCAATTTTCTCAACATTTCTATTTTCTAAATAATTTTCATTTTAAAATCTTCCAGTAGCAAAAGTTGTTTAAGACAAAAACAAATAGTTAATTTCCAGTTAGCAAAGCTTTCTCTTTGTATTAAGTATGCTTTAATCACATTTTCAAAAACATGTGGTTTCTATTTTAACAACTTCTAAAAAGTAATTTGGATTTTGTTTTGGGTGGATTATATTGTATGAAATCCTTTGTCTTTTCATATTTTGACCATTGTATTTTAATGTTTTGTAGCATGTCTTAGAATGAATGCAGGTGTTCCTTTGGAGCATATATCCAACAAAAAGGAGTGAAATTACTGGGTCAGCAACTTCTTTGGTTTTTTTAAAATATTTGATTAAATGAAATGTTTTACATCTCTCTGTTCCTCTTGCTCTTCTGTATATTATCATTCTTGTGGCtttttaaattcaacttttaatttttagataattgtagattcacatatagatgcaagaaataatgcaaatagatcccatacccagttttccagtggtaacatcatgcaaaattatattataatatttttaatgtgggtgtttatcactgtaaacttctctcttagaactattttgctgcatcccataagtttagggatgctgtatttccatttgtgtttgtctcaagatagtttttaaatttgccttttggtttcttctttgacctactgattgttcaacatgatattatttaattttcaaaaatttgtaaattttccaattttcttcctgttactaacttttaatttattaccatggtggtcagaaaacagacttggtatgattttaatcttcttaaatttgttaagatttgttttgtggcttaatatatgatctatcttagagaatgttctgtgcatgcttgagaagaatggtcattctgctgctgttgaatgaaatgtcccataaatgtctcttaggcccttttggtctactgtgttgttcaaatccaaagtttcctttttgattttctgtctggacaatctatctgttgttgaaagtggggttcaaaagtttcctgttaatgtcgtattgctgtctttttctcccttcattgtgctcatattttctttatatatttaggtgctctgaacttgggtgcacacacacttacaattgttat
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            61194  480 -    242197 I
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     103734  484 -    457564 I
e cebCap1.NW_016108310v1      91266  487 +    106389 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376    1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T
e panPan2.chr6             29966507    0 + 173848474 C
e panTro5.chr6             29736798    0 + 175400573 C

a score=854697.000000
s hg38.chr6_GL000254v2_alt   764408 968 +   4827813 attttcttgataaattgactccttcgatcattacaaaattatcttctttgaatcttgtggcagtttttaactgaaagtctattttatctgatgtgtgtatagccacccctcttctctactagctaccatctgcatggaacatctttttccatcccttcacttttagcctatgtgtgtccttaaagatatattgaatccctcagatgcaacacatagttggatcttggttttctttttctattcattcagccactctatgtcttttgatgg-agaattgaattcatttatatttaaagtgattattgacagatgaggacctattactgccatttgttcaggggtttctgactattttgtagatattttgttctttcttcctcttgctgtattcctttgtaatttaatgattttttt-gtgtggtaatatgctttgattttactctttttgtcttgtgtgtacctactacaggtttttgtttgttgttgccataagacttacataaaatatcttacagtttttagtctatgtgaagctgctaataacttaacttcaactgcatacaaaaaccctacactttaacttcttctctctacacatttttatgttattcatgtcacaatttacatcttttcatactctgtatccaccaacaaattattatggctataattgttttattttatcttttaattttatactagaattaaaagtgacttatgccatcagagtatgagagaagtctgaattgtactatattcttatttttacagtgagttttatacttttgaaatgagaaaagttcccttgttcccctcgcggggcacgtgatgggggtgtggcttgcttcttcagtgccccactgctcaaacctctaggggagcatacagatgggcagattgtggggctccgaccccacggtggcatctaggggtggatgtttacagctcctgaagccctaggaggAGAAA
s panTro5.chr6             29736798 969 + 175400573 attttcttgataaattgactccttcgttcattacaaaattatcttctttgaatcttgtggcagtttttaactgaaagtctattttatctgatgtgtgtatagccacccctgttctctactggctaccatctgcatggaacatctttttccatcccttcacttttagcctatgtgtgtccttaaagatatattgaatccctcagatgcaacacatagttggatcttggttttctttttctattcattcagccactctatgtcttttgatgg-agaattgaattcatttatatttaaagtgattattgacagatgaggacctattactgccatttgttcaggggtttctgactattttgtagatattttgttctttcttcatcttgctgtattcctttgtaatttaatgattttttttgtgtggtaatatgctttgattttactctttttgtcttgtgtgtatctactacaggtttttgtttgttgttgccataagacttacataaaacatcttacagtttttagtctatgtgaagctgctaataacttaacttcaactgcatacaaaaaccctacactttaacttcttctctctacacatttttatgttattcatgtcacaatttacatcttttcatactctgtatacaccaacaaattattatggctataattgttttattttatcttttaattttatactagaattaaaagtgacttatgccatcagagtatgagagaagtctgaattgtactatattcttatttttacagtgagttttatacttttgaaatgagaaaagttcccttgttcccctcgcggggcacgtgatgggggtgtggctcgcttcttcagtgccccactgctcaaacctctaggggagcatacagatgggcagattgtggggctccgaccccatggtggcatctaggggtggatgtttacagctcctgaagccctaggaggAGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29966507 969 + 173848474 attttcttgataaattgactccttcgttcattacaaaattatcttctttgaatcttgtggcagtttttaactgaaagtctattttatctgatgtgtgtatagccacccctgttctctactggctaccatctgcatggaacatctttttccatcccttcacttttagcctgtgtgtgtccttaaagatatattgaatccctcagatgcaacacatagttggatcttggttttctttttctattcattcagccactctatgtcttttgatgg-agaattgaattcatttatatttaaagtgattattgacagatgaggacctattactgccatttgttcaggggtttctgactattttgtagatattttgttctttcttcatcttgctgtattcctttgtaatttaatgattttttttgtgtggtaatatgctttgattttactctttttgtcttgtgtgtatctactacaggtttttgtttgttgttgccataagacttacataaaacatcttacagtttttagtctatgtgaagctgctaataacttaacttcaactgcatacaaaaaccctacactttaacttcttctctctacacatttttatgttattcatgtcacaatttacatcttttcatactctgtatccaccaacaaattattatggctataattgttttattttatcttttaattttatactagaattaaaagtgacttatgccatcagagtatgagagaagtctgaattgtactatattcttatttttacagtgagttttatacttttgaaatgagaaaagttcccttgttcccctcgcggggcacatgatgggggtgtggctcgcttcttcagtgccccactgctcaaacctctaggggagcatacagatgggcagattgtggggctccgaccccacggtggcatctaggggtggatgtttacagctcctgaagccctaggaggagAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5778096 968 +   6154872 attttcttgataaattgactccttcgatcattacaaaattatcttctttgaatcttgtggcagtttttaactgaaagtctattttatctgatgtgtgtatagccacccctgttctctactagctaccatctgcatggaacatctttttccatcccttcacttttagcctatgtgtgtccttaaagatatattgaatccctcagatgcaacacatagttggatcttggttttctttttctattcattcagtcactctatgtcttttgatgg-agaattgaattcatttatatttaaagtgattattgacagatgaggacctactactgccatttgttcaggggtttctgactattttgtagatattttgttctttcttcctgttgctgtattcctttgtaatttaatgattttttt-gtgtggtaatatgctttgattttactctttttgtcttgtgtgtatctactacaggtttttgtttgttgttgccataagacttacataaaacatcttacagtttttagtctatgtgaagctgctaataacttaacttcaactgcatacaaaaaccctacactttaacttcttctctctacacatttttatgttattcatgtcacaatttacatcttttcatactctgtatccaccaacaaattattatggctataattgttttattttattttttaattttatactagaattaaaagtgacttatgccatcagagtatgagagaagtctgaattgtactatgttcttatttttacagtgagttttatatttttgaaatgagaaaagttcccttgttcccttcgcggggcacgtgacgggggtgtggctcgctccttcagtgccccactgctcaaacctctaggggagcatacagatgggcagattgtggggctccgaccccacggtggcatctaggggtggatgtttacagctcctgaagccctaggaggAGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74478842 957 + 122973662 attttcttgataaattgactccttccatcattacagaattatcttcttcgaatcttgtggcagtttttaactgaaagtctattttatctgatgtgagtatagccacccctgttctctactagctgccatctgcatgtaatatctttttccatcctgtcacttttagcctatgtgtgtccttaaagatatattgaatcccttagatgcaacacatagttggatcttggttttctttttctattcattcagccactctatgtcttttgattgcagaattcaattcatttatatttaaagtgattgttgatacatgaggacctactactgccatttgttcaggggttt----ctattttgtagacactttgttctttcttcttcttgctgtattcctttgtaatttaatgatattttt---gtggtaatatgctttgattttactctttttgtcttgtgtgtatctactacaggtt----tttgttgttgccgtaagacttacataaaatatcttacagtttttagtctatgtgaagctgataacaacttaacttcaactgcatacaaaaaccctacactttaacttcttctctctacacatttttatgttattcatgtcacaatttacatattttcatactgtgcattcactgacaaattattatggctataattgttttatttggtcttttaattttatactggaattaaaagtgact--tgccatcgcagtatgagagaagtctgaattgtactatattcttatttttacagtgagttttatacttttgaaatgggaaaagttcccttgttcccctcacggggcacgtgatggaggtgtggctcgcttcttcagcgccccattgctcaaacttctaggggagcatacagacaggcagactgtggggctccgacaccacggtggcatcgaggggtggatgtttacagctcctgaagccgtaggaggAGAAA
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            61194 480 -    242197 I
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     103734 484 -    457564 I
e cebCap1.NW_016108310v1      91266 487 +    106389 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376   1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T

a score=5130.000000
s hg38.chr6_GL000254v2_alt   765376 9 +   4827813 CTTCTCATC
s panTro5.chr6             29737767 9 + 175400573 CTTCTCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29967476 9 + 173848474 CTTCTCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5779064 9 +   6154872 CTTCTCATC
i gorGor5.CYUI01015250v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            61194 480 -    242197 I
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     103734 484 -    457564 I
e cebCap1.NW_016108310v1      91266 487 +    106389 I
e colAng1.NW_012115566v1    2505172 48678 -   3067355 T
e manLeu1.NW_012099233v1      75456 57076 +    290775 T
e chlSab2.chr17            28899929 44871 -  71996105 T
e cerAty1.NW_012002711v1     441723 44479 +    766320 T
e macNem1.NW_012011356v1    2689744 44167 -   2996164 T
e macFas5.chrUn_KE146120      19376 1 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T
e nomLeu3.chr1a            74479799 0 + 122973662 C

a score=7018529.000000
s hg38.chr6_GL000254v2_alt   765385 1796 +   4827813 TGCTAAATGGGGCTCCCTTGCAGCTCTGAGGTTCTGAGATCTTAATGTGTGCACTGTGTCTTCAGTGCACACAATACCACCCAACACAAATTCAATGCAATTGATTCCCCAGCAGTTGAACTCAATCACAATGCCACTGGCCTTGTTCTAAAAATTAAAGAACTGCTGCAGGAAGGGCCCTATAAATTTTGTCATCATAACTGCCTGAGCCAGAGATGTGGGGTGTTCCCTGCCAATCAGGGCAGAACAGGTTGACATGGGCCAATGAAGCCCAGAGGTCCTGGAGGAGATGAAAGTCACACAAGCCCCCTCAGAGATATCTGCCAACGTCAGTGTTGGGGTCTCTTCTGAAGGACGCTGTCTGTGAGATTGGGAAAGGTACCCAGCAGCCTTGTTTCTGTGGCCCAATACTTTTTCCACCAGACTCCTTCACGTGCCTAATTTGGGACATGGTTTCTGAGCTGCAGGTGTTGCCCACTCCAGCCCAGAGATCCCAGAACATCCTGCAAGCTCAGACGCAG---GATAAAGGGCCACAGGAGCAGGAGCCTCCTCTCTCTGGGCAACTTCAGACTGTTTCCCCACTGTGCTGTCC-TAGAAGGGGCTGATGCAGTGAACAGAGCCCTTGGGGCAGGTGGGGCCTGGGCTCAGCTGCAGAGACCAGGGGACGGGCTGGACCACATTCTCTTTCTGCCATATGCAGCTGCCTTACACTACAAGAGGGGGAAGAAGGGAGCTGAGGAGGTAAAAAGAGAAAAGACCCAGAGCCAGCGGGCTTTGTCACATCGGCTGTGACAGTTAAACCTGGCATTACTCGTAATTGCTTACATTTACTACACATTCATACAGAGGCCATGCTGTGGCTAGGCGTCTCTGGGCTAAGAATGTCTTATTCATTTAGAACTAGTACCTCGGACTCTGATTACGGGCCTTGCTGCGTGTAAGGAACAGCACTGCTTTAGCATGAAGCCTAGCCTATTGTCAGTGCTCAGAGAGCTCTGACACCAACAATTGGTTTTCCTACAAAGAATCACGTAATATTTGGGTTATAGAAGCAGGGCAGTGCTAACTGGATGTCCTGAAAGGAATGGACCTGGCATAAGAAGGGATGGAGAGCAGAATTTGAAAAGCATCCAATCCTGAAATTGGGCTGGAGGGAGCATGTCCCAAGCCTGTTAGGGACTGCAGGAAATTCATGACCAGTATGAAGGTGAAGCTGGGCACCTGCAGGCAGGCTGGTCTGCTCTCTCTGC-TGTGACCCTCCTCAGGGCAGGCTGTGCTGTCAACAGGTGTTGTGCAATGCCAAGAACCCATGAGAATTCTCACTACGCCAGGGTTTTGAGGCACCCCTGTTCCCAGGTTCCTTCCTAGAACCCTGGTCGCCTTGGGATGACTGGGGGATTCTAGTTGACTACCCAAGGAAATCTGAAGCTTGGGAAGTTTGCAATGTTAAGTCTCGGTCCAGAGTCGGACCTGGCTCCGCGCCT-GTCTGGCAGCAGCAGCAGCAATCCCTATCCGGGTCCAGAGCCCTGCCCAGTGGATACTGTGTGGTGTTTCCACAAAGTTGCATCTTTGAGCACCTCACAGAGAATCTGGAGCCTCTCAACCAGGACAACGTGAGAAAAAAATCTG-AAGAAAAAGGCCCAGGTGCTTGGGGTAAGAACAGCCAAGCAAAGGGCAGAGGCTGAGTGGGTGCCAGGAGGACACTTTGTCACTTTGGAGACAGAGCC-----TTTGGCTTAAGGAGTTCCAGGCTGCTCTGGAGGCGTCGGGGGAGGCCTCTGGGACCACCTAGTCATTTT
s panTro5.chr6             29737776 1800 + 175400573 TGCTAAATGGGGCTCCCTTGCAGCTCTGAGGTTCTGAGATCTTAATGTGTGCACTGTGTCTTCAGTGCACACAATACCACCCAACACAAATTCAATGCAATTGATTCCCCAGCAGTTGAACTCAATCACAATGCCACTGGCTTTGTTCTAAAAATTAAAGAACTGCTGCAGGAAGGGCCCTATAAATTTTGTCATCATAACTGCCTGAGCCAGAGATGCGGGGTGTTCCCTGCCAATCAGGGCAGAGCAGGTTGACATGGGCCAATGAAGCCCAGAGGTCCTGGAGGAGATGAAAGTCACACAGGCCCCCTCAGAGATATCTGCCAACGTCAGTGTTGGGGTCTCTTCTGAAGGACGCCGTCTGTGAGATTGGGAAAGGTACCCAGCAGCCTTGTTTCTGTGGCCCAATACTTTTTCCACCAGACTCCTTCACGTGCCTAATTTGGGACATGGTTTCTGAGCTGCAGGTGTTGCCCACTCCAGCCCAGAGATCCCAGAACATCCTGCAAGCTCAGAGGCAGTTGGATAAAGGGCCACAGGAGCAGGAGCCTCCTCTCTCTGGGCAACTTCAGACTGTTTCCCCACTGTGCTGTCC-TAGAAGGGGCTGATGCAGTGAACAGAGCCCTTGGGGCAGGTGGGGCCTGGGCTCAGCTGCAGAGACCAGGGGACGGGCTGGACCACATTCTCTTTCTGCCATATGCAGCTGCCTTACACTACAAGAGGGGGAAGAAGGGAGCTGAGGAGGTAAAAAGAGAAAAGACCCAGAGCCAGCGGGCTTTGTCACATCGGCTGTGACAGTTAAACCTGGCATTACTCGTAATTGCTTACATTTACTACACATTCATACAGAGGCCATGCTGTGGCTAGGCGTCTCTGGGCTAAGAATGTCTTATTCATTTAGAACTAGTACCTCGGACTCTGATTATGGGCCTTGCTGCGTGTAAGGAACAGCACTGCTTTAGCATGAAGCCTAGCCTACTGTCAGTGCTCAGAGAGTTCTGACACCAACAATTGGTTTTCCTACAAAGAATCACGTAATATTTGGGTTATAGAAGCAGGGCAGTGCTAACTGGATGTCCTGAAAGGAATGGACCTGGCATAAGAAGGGATGGAGAGCAGAATTTGAAAAGCATCCAATCCTGAAACTGGGCTGGAGGGAGCATGTCCCAAGCCTGTTAGGGACTGCAGGAAATTCATGACCAGTATGAAGGTGGAGCTGGGCACCTGCAGGCAGGCTGGTCTGCTCTCTCTGCCTGTGACCCTCCTCAGGGCAGGCTGTGCTGTCAACAGGTGTTGTGCAATGCCAAGAACCCATGAGAATTCTCACTATGCCAGGGTTTTGAGGCACCCATGTTCCCAGGTTCCTTCCTAGAACCCTGGTCGCCTTGGGATGACTGGGGGATTCTAGTTGACTACCCAAGGAAATCTGAAGCTTGGGAAGTTTGCAATGTTAAGTCTCGGTCCAGAGTCGGACCTGGCTCCGCGCCT-GTCTGGCAGCAGCAGCAGCAATCCCTATCTGGGTCCAGAGCCCTGCCCAGCAGATACCGTGTGGTGTTTCCACAAAGTTGCATCTTTGAGCACCTCACAGAGAATCTGGAGCCTCTCAACCAGGACAACGTGAGAAAAAAATCTG-AAGAAAAAGGCCCAGATGCTTGGGGTAAGAACAGCCAAGCAAACGGCAGAGGCTGAGTGGGTGCCGGGAGGACACTTTGTCACTTTGCAGACAGAGCC-----TTTGGCTTAAGGAGTTCCAGGCTGCTCTGGAGGTGTTGGGGGAGGCCTCTGGGACTACCTAGTCATTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29967485 1800 + 173848474 TGCTAAATGGGGCTCCCTTGCAGCTCTGAGGTTCTGAGATCTTAATGTGTGCACTGTGTCTTCAGTGCACACAATACCACCCAACACAAATTCAATGCAATTGATTCCCCAGCAGTTGAACTCAATCACAATGCCACTGGCTTTGTTCTAAAAATTAAAGAACTGCTGCAGGAAGGGCCCTATAAATTTTGTCATCATAACTGCCTGAGCCAGAGATGCGGGGTGTTCCCTGCCAATCAGGGCAGAGCAGGTTGACATGGGCCAATGAAGCCCAGAGGTCCTGGAGGAGATGAAAGTCACACAGGCCCCCTCAGAGATATCTGCCAACGTCAGTGTTGGGGTCTCTTCTGAAGGACGCCGTCTGTGAGATTGGGAAAGGTACCCAGCAGCCTTGTTTCTGTGGCCCAATACTTTTTCCACCAGACTCCTTCACGTGCCTAATTTGGGACATGGTTTCTGAGCTGCAGGTGTTGCCCACTCCAGCCCAGAGATCCCAGAACATCCTGCAAGCTCAGAGGCAGTTGGATAAAGGGCCACAGGAGCAGGAGCCTCCTCTCTCTGGGCAACTTCAGACTGTTTCCCCACTGTGCTGTCC-TAGAAGGGGCTGATGCAGTGAACAGAGCCCTTGGGGCAGGTGGGGCCTGGGCTCAGCTGCAGAGACCAGGGGACGGGCTGGACCACATTCTCTTTCTGCCATATGCAGCTGCCTTACACTACAAGAGGGGGAAGAAGGGAGCTGAGGAGGTAAAAAGAGAAAAGACCCAGAGCCAGCGGGCTTTGTCACATCGGCTGTGACAGTTAAACCTGGCATTACTCGTAATTGCTTACATTTACTACACATTCATACAGAGGCCATGCTGTGGCTAGGCGTCTCTGGGCTAAGAATGTCTTATTCATTTAGAACTAGTACCTCGGACTCTGATTACGGGCCTTGCTGCGTGTAAGGAACAGCACTGCTTTAGCATGAAGCCTAGCCTACTGTCAGTGCTCAGAGAGTTCTGACACCAACAATTGGTTTTCCTACAAAGAATCACGTAATATTTGGGTTATAGAAGCAGGGCAGTGCTAACTGGATGTCCTGAAAGGAATGGACCTGGCATAAGAAGGGATGGAGAGCAGAATTTGAAAAGCATCCAATCCTGAAACTGGGCTGGAGGGAGCATGTCCCAAGCCTGTTAGGGACTGCAGGAAATTCATGACCAGTATGAAGGTGGAGCTGGGCACCTGCAGGCAGGCTGGTCTGCTCTCTCTGCCTGTGACCCTCCTCAGGGCAGGCTGTGCTGTCAACAGGTGTTGTGCAATGCCAAGAACCCATGAGAATTCTCACTATGCCAGGGTTTTGAGGCACCCATGTTCCCAGGTTCCTTCCTAGAACCCTGGTCGCCTTGGGATGACTGGGGGATTCTAGTTGACTACCCAAGGAAATCTGAAGCTTGGGAAGTTTGCAATGTTAAGTCTCGGTCCAGAGTCGGACCTGGCTCCGCGCCT-GTCTGGCAGCAGCAGCAGCAATCCCTATCCGGGTCCAGAGCCCTGCCCAGCAGATACCGTGTGGTGTTTCCACAAAGTTGCATCTTTGAGCACCTCACAGAGAATCTGGAGCCTCTCAACCAGGACAACGTGAGAAAAAAATCTG-AAGAAAAAGGCCCAGATGCTTGCGGTAAGAACAGCCAAGCAAAGGGCAGAGGCTGAGTGGGTGCCGGGAGGACACTTTGTCACTTTGCAGACAGAGCC-----TTTGGCTTAAGGAGTTCCAGGCTGCTCTGGAGGCGTCGGGGGAGGCCTCTGGGACTACCTAGTCATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5779073 1791 +   6154872 TGCTAAATGGGGCTCCCTTGCAGCTCTGAAGTTCTGAGATCTTAATGTGTGCACTGTGTCTTCAGTGCACACAATACCACCCAACACAAATTCAATGCAATTGATTCCCCAGCAGTTGAACTCAATCACAATGCCACTGGTCTTGTTCTAAAAATTAGAGAACTGCTGCAGGAAGGGCCCTATAAATTTTGTCATCATAACTGCCTGAGCCAGAGATGTGGAGTGTTCCCTGCCAATCAGGGCAGAGCAGGTTGACATGGGCCAATGAAGCCCAGAGGTCCTGGAGGAGATGAAAGTCACACAGGCCCCCTCAGAGATATCTGCCAACGTCAGTGTTGGGGTCTCTTCTGAAGGACGCTGTCTGTGAGATTGGGAAAGGTACCCAGCAGCCTTGTTTCTGTGGCCCAATACTTTTTCCACTAGACTCCTTCACGTGCCTAATTTGGGACATGGTTTCTGAGCTGCAGGTGTTGCCCCCTCCAG---------CCCAGAACATCCTGCAAGCTCAGAGGCAGTTGGATAAAGGGCCACAGGAGCAGGAGCCTCCTCTCTCTGGGCAACTTCAGACTGTTTCCCCACTGTGCTGTCC-TAGAAGGGGCTGATGCAGTGAACAGAGCCCTTGGGGCAGGTGGGGCCTGGGCTCAGCTGCAGAGACCAGGGGACGGGCTGGACCACATTCTCTTTCTGCCATATGCAGCTGCCTTACACTACAAGAGGGGGAAGAAGGGAGCTGAGGAGGTAAAAAGAGAAAAGACCCAGAGCCAGCGGGCTTTGTCACATCGGCTGTGACAGTTAAACCTGGCATTACTCGTAATTGCTTACATTTACTACACATTCATACAGAGGCCATGCTGTGGCTAGGCGTCTCTGGGCTAAGAATGTCTTATTCATTTAGAACTAGTACCTCGGACTCTGATTACGGGCCTTGCTGCGTGTAAGGAACAGCACTGCTTTAGCATGAAGCCTAGCCTACTGTCAGTGCTCAGAGAGCTCTGACACCAACAGTTGGTTTTCCTACAAAGAATCACGTAATATTTGGGTTATAGAAGCAGGGCAGTGCTAACTGGATGTCCTGAAAGGAATGGACCTGGCATAAGAAGGGATGGAGAGCAGAATTTGAAAAGCATCCAATCCTGAAATTGGGCTGGAGGGAGCATGTCCCAAGCCTGTTAGGGACTGCAGGAAATTCATGACCAGTATGAAGGTGGAGCTGGGCACCTGCAGGCAGGCTGGTCTGCTGTCTCTGCCTGTGACCCTCCTCAGGGCAGGCTGTGCTGTCAACAGGTGTTGTGCAATGCCAAGAACCCATGAGAATTCTCACTACCCCAGGGTTTTGAGGCACCCCTGTTCCCAGGTTCCTTCCTAGAACCCTGGTCGCCTTGGGATGACTGGGGGATTCTAGTTGACTACCCAAGGAAATCTGAAGCTTGGGAAGTTTGCAATGTTAAGTCTCGGTCCAGAGTCGGACCTGGCTCCGCGCCT-GTCTGGCAGCAGCAACAGCAATCCCTATCCGGGTCCAGAGCCCTGCCCAGTGGATACCGTGTGGTGTTTCCACAAAGTTGCATCTTTGAGCACCTCACAGAGAATCTGGAGCCTCTCAACCAGGACAACATGAGAAAAAAATCTG-AAGAAAAAGGCCCAGGTGCTTGGGGTAAGAACAGCCAAGCAAAGGGCAGAGGCTGAGTGGGTGCCGGGAGGACACTTTGTCACTTTGGAGACAGAGCC-----TTTGGCTTAAGGAGTTCCAGGCTGCTCTAGAGGTGTCGGGGGAGGCCTCTGGGACCACCTAGTCATTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      19377 1798 +     27237 TGCTAAATGGGGCACCCTTGCAGCTCTGAAGTTCTGAGATCTTAATGCACGCAT--TGTCTTCAGTGCACACAATACCACCCACCACAAGTTCAATGCAATCAATTCCCCAGCAATTGAACTCAATCACAATGCCACTGCCCTTGTTCTAAAAATTAAAGAGTTGCTGCAGGAAGGGTCCTATAAATTTTGTCGTCATAACTGCCTGAGCTAGAGATGCGGGGTGTTCCCTGCCAATCAGGGCAGAGTGGGTTGACACGGGCCAATGAAGCCCAGAGGCCTCAGAGGAGATGAAAGTCACACAGGCCCCCTGAGAGATATCTGCCAATGTCAGTGTTGCGGTCTCTTTTGAAGGATGCTGTCTGTGAGCTTGTGAAAGGCACCCAGCAGCCTTGTTTCTGTGGCCCATTACTTTTTCCACTAGACTCCTTCACGTGCCTGATTTGGGACATGGTTTCTGAGCTGCAGGTGTTGCCCACTCCAGCCCAGAGGTCCCAGAACATCCTGCAAGCCCAGAAGCAGTTGGACAAAGGGCCACAGGAGCAGGATCCTCCTCTCTCTGGGCAACTTCAGACTGTTTCCTGACTGTGCCGTCCTTAGGAGGGGCTGATGCAGTGAACAGAGCCCTTGAGGCAGGTGGGGCCTGGGTTCAGCTGCAGAGACCAGAGGAAGGGCGGGACCACATTCTCTTTCTGCCATATGCAGCTGCCTTACACTACAAGATGGGGAAGAAGGGAGCTGAGGAGATAAAGTGAGAAAAGACCCAGAGCCAGTGGGCTTTGTCACATCGGCTGTGACAGTTAGACCTGGCATTACTCATAATTGCTAACATTTACTACACATTCATACAGAGGCCATGCTGTGACTAGGTGTTTCTGGGCGGAGAATGTATTACTCATTTAGAACTAGTACCTCGGACTCTGATTATGGGCCTTGCTGTGTGTAAGGAACAGCACTGCCGTAGCGTGAAGCCTAGCCTACTGTCAGTGCTCAGAGAGCTCTGACACCAACAACTGGTTTTCCTACAAAGAATCACGTAATATTTGGATTATAGAAGCAGGGCAGTGCTAACTGGATGTCCTGAAAGGGGTAGACCTGGCATACGAAGGGATGGAGAGCAGAATTTGGAAAGCATCCAATCCTGAAACTGGGCTGGAGGGAGCATGTCCCAAGCCTGTTAGGAACTGCAGGAAATTCATGACCAGAATGAAGGTGGGGCTGGGGACCTGCAGGCAGGCTGGTCTGCTGTCTTTGCCTGTGACCCTCCTCAGGGCATGCTGTGCTGTCAACAGGTGTTGTGCAATGCCAAGCACCTATGAGAATTCCCACTACCCCAGGGATTTGAGGCACCCCTAATCCCAGGTTCCTTCCTAGAACCCAGGTTGCCTTGGGATGACTGGGGGATTCTGGTTGACTACCCAGGGAAATCTGAAGCTTGGGAAGTTTGCAATGTTAAGTCTCAGTTCAGAGTCGGACCTGGCTCTGTGCCTCTTCTGGTGGCAGCAGCAG---TCCCTATCCAGGTCCAGAGCCCTGCCCAGTGGATACCATGTGGTCCTTCCACAAAGTTGCATCTTTGAGCCCCTCACAGAGAATCTGGAGCCTCCCAACCAGGATGACATGAG-AAAGGATCTG-AAAAAAAAGGCCCAGGTGCTTGGGGTAAGAACAGCCAAGCAAAGGGCAGAGGCTGAGTGGGTGCCGGGAGGACCAT---TCACTTTGGGGACAGAGCCTTTGGTTTGGCTTAAGGAGTTCCAGGCTGCTCTGGAGGCGTCGGGGGAGCCCTCTGGGACCACCCAGTCATTTT
i macFas5.chrUn_KE146120   I 1 M 1000
s macNem1.NW_012011356v1    2645577 1798 -   2996164 TGCTAAATGGGGCACCCTTGCAGCTCTGAAGTTCTGAGATCTTAATGCACGCAT--TGTCTTCAGTGCACACAATACCACCCACCACAAGTTCAATGCAATCAATTCCCCAGCAATTGAACTCAATCACAATGCCACTGCCCTTGTTCTAAAAATTAAAGAGTTGCTGCAGGAAGGGTCCTATAAATTTTGTCGTCATAACTGCCTGAGCTAGAGATGCGGGGTGTTCCCTGCCAATCAGGGCAGAGTGGGTTGACACGGGCCAATGAAGCCCAGAGGCCTCAGAGGAGATGAAAGTCACATAGGCCCCCTGAGAGATATCTGCCAATGTCAGTGTTGCGGTCTCTTTTGAAGGATGCTGTCTGTGAGCTTGTGAAAGGCACCCAGCAGCCTTGTTTCTGTGGCCCATTACTTTTTCCACTAGACTCCTTCACGTGCCTGATTTGGGACATGGTTTCTGAGCTGCAGGTGTTGCCCACTCCAGCCCAGAGGTCCCAGAACATCCTGCAAGCCCAGAAGCAGTTGGACAAAGGGCCACAGGAGCAGGATCCTCCTCTCTCTGGGCAACTTCAGACTGTTTCCTGACTGTGCCGTCCTTAGGAGGGGCTGATGCAGTGAACAGAGCCCTTGAGGCAGGTGGGGCCTGGGTTCAGCTGCAGAGACCAGAGGAAGGGCGGGACCACATTCTCTTTCTGCCATATGCAGCTGCCTTACACTACAAGATGGGGAAGAAGGGAGCTGAGGAGATAAAGTGAGAAAAGACCCAGAGCCAGTGGGCTTTGTCACATCGGCTGTGACAGTTAGACCTGGCATTACTCATAATTGCTAACATTTACTACACATTCATACAGAGGCCATGCTGTGACTAGGTGTTTCTGGGCGGAGAATGTATTACTCATTTAGAACTAGTACCTCGGACTCTGATTATGGGCCTTGCTGTGTGTAAGGAACAGCACTGCCGTATCGTGAAGCCTAGCCTACTGTCAGTGCTCAGAGAGCTCTGACACCAACAACTGGTTTTCCTACAAAGAATCACGTAATATTTGGATTATAGAAGCAGGGCAGTGCTAACTGGATGTCCTGAAAGGGGTAGACCTGGCATACGAAGGGATGGAGAGCAGAATTTGGAAAGCATCCAATCCTGAAACTGGGCTGGAGGGAGCATGTCCCAAGCCTGTTAGGAACTGCAGGAAATTCATGACCAGAATGAAGGTGGGGCTGGGGACCTGCAGGCAGGCTGGTCTGCTGTCTTTGCCTGTGACCCTCCTCAGGGCATGCTGTGCTGTCAACAGGTGTTGTGCAATGCCAAGCACCTATGAGAATTCCCACTACCCCAGGGATTTGAGGCACCCCTAATCCCAGGTTCCTTCCTAGAACCCAGGTTGCCTTGGGATGACTGGGGGATTCTGGTTGACTACCCAGGGAAATCTGAAGCTTGGGAAGTTTGCAATGTTAAGTCTCAGTTCAGAGTCGGACCTGGCTCTGTGCCTCTTCTGGTGGCAGCAGCAG---TCCCTATCCAGGTCCAGAGCCCTGCCCAGTGGATACCATGTGGTCCTTCCACAAAGTTGCATCTTTGAGCCCCTCACAGAGAATCTGGAGCCTCCCAACCAGGATGACATGAG-AAAAGATCTG-AAAAAAAAGGCCCAGGTGCTTGGGGTAAGAACAGCCAAGCAAAGGGCAGAGGCTGAGTGGGTGCCGGGAGGACCAT---TCACTTTGGGGACAGAGCCTTTGGTTTGGCTTAAGGAGTTCCAGGCTGCTCTGGAGGCGTCGGGGGAGCCCTCTGGGACCACCCAGTCATTTT
i macNem1.NW_012011356v1   T 44167 C 0
s cerAty1.NW_012002711v1     397244 1801 +    766320 TGCTAAATGGGGCACCCTTGCAGCTCTGAAGTTCTGAGATCTTAATGCATGCATTGTGTCTTCAGTGCACACAATACCACCCACCACAAGTTCAATACAATCTATTCCCCAGCAATTGAACTCAATCACAATGCCACTGCCCTTGTTCTAAAAATTAAAGAGTTGCTGCAGGAAGGGTCCTATAAATTTTGTCATCATAACTGCCTGAGCTAGAGATGCGGGGTGTTCCCTGCCAATCAGGGCAGAGCAGGTTGACACGGGCCAATGAAGCCCAGAGGCCTCAGAGGAGATGAAAGTCACACAGGCCCCCTGAGAGATATCTGCCAATGTCAGTGTTGGGGTCTCTTCTGAAGGATGCTGTCTGTGAGCTTGTGAAAGGCACCCAGCAGCCTTGTTTCTGTGGCCCATTACTTTTTCCACTAGACTCCTTCACATGCCTGATTTGGGACATGGTTTCTGAGCTGCAGGTGTTGCCCACTCCAGCCCAGAGGTCCCAGAACATCCTGCAAGCCCAGAAGCAGTTGGCCAAAGGGCCACAGGAGCAGGATCCTCCTCTCTCTGGGCAACTTCAGACTGTTTCCTGACTGTGCTGTCCTTAGGAGGGGCTGATGCAGTGAACAGAGCCCTTGAGGCAGGTGGGGCCTGGGCTCAGCTGCAGAGACCAGGGGAAGGGCTGGACCACATTCTCCTTCTGCCATATGCAGCTGCCTTACACTACAAGATGGGGAAGAAGGGAGCTGAGGAGATAAAGTGAGAAAAGACCCAGAGCCAGTGGGCTTTGTCACATCGGCTGTGACAGTTAGACCTGGCATTACTCATAATTGCTAACATTTACTACACAGTCATACAGAGGCCATGCTGTGACTACATGTTTCTGGGCTGAGAATGTATTACTCATTTAGAACTAGTACCTCGGACTCTGATTATGGGCCTTGCTGTGTGTAAGGAACAGCACTGCCTTAGCGTGAAGCCTAGCCTACTGTCAGTGCTCAGAGAGCTCTGACACCAGCAACTGGTTTTCCTACAAAGAATCACGTAATATTTGGATTATAGAAGCAGGGCAGTGCTAACTGGATGTCCTGAAAGGGGTAGACCTGGCATACGAAGGGATGGAGAGCAGAATTTGGAAAGCATCCAATCCTGAAACTGGGCTGGAGGGAGCATGTCCCAAGCCTGTTAGGAACTGCAGGAAATTCATGACCAGAATGAAGGTGGGGCTGGGCACCTGCAGGCAGGCTGGACTGCTCTCTTTGCCTGTGACCCTCCTCAGGGCATGCTGTGCTGTCAACAGGTGTTGTGCAATGCCAAGCACCCATGAGAATTCCCGCTACCCCAGGGATTTGAGGCACCCCTAATCCCAGGTTCCTTCCTAGAACCCAGGTTGCCTTGGGATGACTGGGGGATTCTGGTTGACTACCCAGGGAAATCTGAAGCTTGGGAAGTTTGCAATGTTAAGTCTCAGTTCAGAGTCGGACCTGGCTCTGTGCCTCTTCTGGCGGCAGCAGCAG---TCCCTATCCAGGTCCAGAGCCCTGCCCAGTGGATACCATGTGGTCCTTCCACAAAGTTGCATCTTTGAGCCCCTCACAGAGAATCTGGAGCCTCCCAACCAGGATGACATGAG-AAAAGATCTGAAAAAAAAAGGCCCAGGTGCTTGGGGTAAGAACAGCCAAGCAAAGGGCAGAGGCTGAGTGGGTGCCGGGAGGACCAT---TCACTTTGGGGACAGAGCCTTTGGTTTGGCTTAAGGAGTTCCAGGCTGCTCTGGAGGCGTCGGGGGAGCCCTCTGGGACCACCCAGTCATTTT
i cerAty1.NW_012002711v1   T 44479 C 0
s chlSab2.chr17            28855058 1796 -  71996105 TGCTAAACGGGGCACCCTTGCAGCTCTGAAGTTCTGAGATCTTAATGCATGCAT--TGTCTTCAGTGCACACAATACCACCCACCACAAGTCCAATGCAATCGATTCCCCAGCAATTGAACTCAATCACAACGCCACTGCCCTTGTTCTAAAAATTAAACAGTTGCTGCAGGAAGGGTCCTATAAATTTTGTCATCATAACTGCCTGAGCTAGAGATGCGGGGTGTTCCCTGCCAATCAGGGCAGAGCAGGTTGACACGGGCCAATGAAGCCCAGAGGCCTCAGAGGAGATGAAAGTCCCACAGGCCCCCTGAGAGATATCTGCCAATGTCAGTGTTGGGGTCTCTTCTGAAGGATGCTGTCTGTGAGATTGTGAAAGGCACCCAGCAGCCTTGTTTCTGTGGCCCATTACTTTTTCCACTAGACTCCTTCACGTGCCTAATTTGGGACATGGTTTCTGAGCTGCAGATGTTGCCCACTCCAGCCCAGAGGTCCCAGAACATCCTGCAAGCCCAGAAGCAGTTGGCCAAAGGGCCACAGGAGCAGGATCCTCCTCTCTCTGGGCAACTTCAGACTGTTTCCTGACTGTGCCGTCCTTAGAAGGGGCTGATGCAGTGAACAGAGCCCTTGAGGCAGGTGGGGCCTGGGCTCAGCTGCAGAGACCAGAGGAAGGGCTGGACCACATTCTCTTTCTGCCATATGCAGCTGCCTTACACTACAAGATGGGGAAGAAGGGAGCTGAGGAGATAAAGTGAGAAAAGACCCAGAGCCAGTGGGCTTTGTCACATCGGCTGTGACAGTTAGACCTGGCATTACTCATAATTGCTAACATTTACTACACAGTCATACAGAGGCCATGCTGTGACTAGGTGTTTCTGGGCTGAGAATGTATTACTCATTTAGAACTAGTACCTCGGACTCTGATTATGGGCCTTGCTGTGTGTAAGGAACAGCACTGCCTTAGCGTGAAGCCTAGCCTACTGTCAGTGCTCAGAGAGCTCTGACACCAGCAACTGGTTTTCCTACAAAGAATCACGTAATATTTGGATTATAGAAGCAGGGCAGTGCTAACTGGATGTCCTGAAAGGGGTAGACCTGGCATAAGAAGGGATGGAGAGGAGAATTTGGAAAGCATCCAATCCTGAAACTGGGCTGGAGGGAGCATGTCCCAAGCCTGTTAGGGACTGCAGGAAATTCATGACCAGAATGAAGGTGGGGCTGGGCACCTGCAGGCAGGCTGGTCTGCTCTCTTTGCCTGTGACCCTCCTCAGGGCATGCTGTGCTGTCAACAGGTGTTGTGCAATGCCAAGCACCCATGAGAATTCCCACTACCCCAGGGATTTGAGGCACCCCTGATCCCAGGTTCCTTCCTAGAACCCAGGTTGCCTTGGGATGACTGGGGGATTCTGGTTGACTACCCAGGGAAATGTGAAACTTGGGAAGTTTGCAATGTTAAGTCTCAGTTCAGAGTCGGACCTGGCTCTGCGCCTCTTCTGGCAGCAGCAGCAG---TCCCTATCCAGGTCC-GAGCCCTGCCCAGTGGATACCATGTGGTCCTTCCACAAAGTTGCATCTTTGAGCCCCTCACAGAGAATCTGGAGCCTCCCAACCAGGATGACATGAG-AAAAGATCTG--AAAAAAAGGCCCAGGTGCTTGGGGTAAGAACAGCCAAGCAAAGGGCAGAGGCTGAGTGGGTGCCGGGAGGACCAT---TCACTTTGGGGACAGAGCCTTTGGTTTGGCTTAAGGAGTTCCAGGCTGCTCTGGAGGCGTCGGGGGAGCCCTCTGGGATCACCCAGTCATTTT
i chlSab2.chr17            T 44871 C 0
s manLeu1.NW_012099233v1      18380 1798 +    290775 TGCTAAACGGGGCACCCTTGCAGCTCTGAAGTTCTGAGATCTTAATGCATGCAT--TGTCTTCAGTGCACACAATACCACCCACCACAAGTTCAATGCAATCAATTCCCCAGCAATTGAACTCAATCACAATGCCACTGCCCTTGTTCTAAAAATTAAAGAGTTGCTGCAAGAAGGGTCGTATAAATTTTGTCATCATAACTGCCTGAGCTAGAGATGCGGGGTGTTCCCTGCCAATCAGGGCAGAGCAGGTTGACACGGGCCAATGAAGCCCAGAGGCCTCAGAGGAGATGAAAGTCACACAGGCCCCCTGAGAGATATCTGCCAATGTCAGTGTTGGGGTCTCTTCTGAAGGATGCTGTCTGTGAGCTTGTGAAAGGCACCCAGCAGCCTTGTTTCTGTGGCCCATTACTTTTTCCACCAGACTCCTTCACATGCCTGATTTGGGACATGGTTTCTGAGCTGCAGGTGTTGCCCACTCCAGCCCAGAGGTCCCAGAACATCCTGCAAGCCCAGAAGCAGTTGGCCAAAGGGCCACAGGAGCAGGATCCTCCTCTCTCTGGGCAACTTCAGACTGTTTCCTGACTGTGCTGTCCTTAGGAGGGGCTGATGCAGTGAACAGAGCCCTTGAGGCAGGTGGGGCCTGGGCTCAGCTGCAGAGACCAGGGGAAGGGCTGGACCACATTCTCCTTCTGCCATATGCAGCTGCCTTACACTACAAGATGGGGAAGAAGGGAGCTGAGGAGATAAAGTGAGAAAAGACCCAGAGCCAGTGGGCTTTGTCACATCGGCTGTGACAGTTAGACCTGGCATTACTCATAATTGCTAACATTTACTACACAGTCATACAGAGGCCATGCTGTGACTACATGTTTCTGGGCTGAGAATGTATTACTCATTTAGAACTAGTACCTCGGACTCTGATTATGGGCCTTGCTGTGTGTAAGGAACAGCACTGCCTTAGCGTGAAGCCTAGCCTACTGTCAGGGCTCAGAGAGCTCTGACACCAGCAACTGGTTTTCCTACAAAGAATCACGTAATATTTGGATTATAGAAGCAGGGCAGTGCTAACTGGATGTCCTGAAAGGGGTAGACCTGGCATACGAAGGGATGGAGAGCAGAATTTGGAAAGCATCCAATCCTGAAACTGGGCTGGAGGGAGCATGTCCCAAGCCTGTTAGGAACTGCAGGAAATTCATGACCAGAATGAAGGTGGGGCTGGGCACCTGCAGGCAGGCTGGTCTGCTCTCTTTGCCTGTGACCCTCCTCAGGGCAGGCTGTGCTGTCAACAGGTGTTGTGCAATGCCAAGCACCCATGAGAATTCCCACTACCCCAGGGATTTGAGGCACCCCTAATCCCAGGTTCCTTCCTAGAACCCAGGTTGCCTTGGGATGACTGGGGGATTCTGGTTGACTACCCAGGGAAGTCTGAAGCTTGGGAAGTTTGCAATGTCAAGTCTCAGTTCAGAGTCAGACCTGGCTCTGTGCCTCTTCTGGCGGCAGCAGCAG---TCCCTATCCAGGTCCAGAGCCCTGCCCAGTGGATACCATGTGGTCCTTCCACAAAGTTGCATCTTTGAGCCCCTCACAGAGAATCTGGAGCCTCCCAACCAGGATGACATGAG-AAAAGATCTG-AAAAAAAAGGCCCAGGTGCTTGGGGTAAGAACAGCCAAGCAAAGGGCAGAGGCTGAGTGGGTGCCGGGAGGACCAT---TCACTTTGGGGACAGAGCCTTTGGTTTGGCTTAAGGAGTTCCAGGCTGCTCTGGAGGCGTCGGGGGAGCCCTCTGGGACCACCCAGTCATTTT
i manLeu1.NW_012099233v1   T 57076 C 0
s colAng1.NW_012115566v1    2456494 1792 -   3067355 TGCTAAATGGGGCACCCTTGCAGCTCTGAAGTTCTGAGATCTTAATGCATGCATTGTGTCTTCAATGCACACAACACCACCCACCACAAGTCCAGTGCAATCGATTCCCCAGCATTTGAACTCAATCACAATGCCACTGGCTTTGTTCTAAAAATTAGAGAGTTGCTGCAGGAAGGGTCCTATAAATTTTGTCATCATAATTGCCTGAGCCAGAGATG-GGGGTGTTCCCTGCCAATCAGGGCAGAGCAGGTTGAAATGGGCCAATGAAGCCCAGAGGCCTCAGAGGAGATGAAAATCACACAGGACCCCTGAGAGATATCTGCCAATGTCAGTGTTGGGGTCTCTTCTGAAGGATGTTGTCTGTGAGACTGTAAAAGGAACCCAGCAGCCTTGTTTCTGTGGCCCAATACTTTTTCCACTAGACTCTTTCACGTGTCTAATTTGGGAAGTGGTTTCTGAGCTGCAGGTGTTGCCCACTCCAGCCCAGAGGTTCCAGAACATCCTGCAAGCCCAGAAGCAGTTGGACAAAAGGCCACAGGAGCAGGATCCTC----CTCTGGGCAACTTCAGACTGTTTCCTGACTGTGCTGTCCTTAGGAGGGGCTGATGCAGTGAACAGAGTCCTTGAGGCAGGTGGGGCCTGGGCTCAGCTGCAGAGACCAGGGGAAGGGCTGGACCACATTCTCTTTCTGCCATATGCAGCTGCCTTACACTACAAGAGGGGGGAGAAGGGAGCTGAGGAGATAAAATGAGAAAAGACCCAGAACCAGTGGGCTTTGTCACATCGGCTGTGACAGTTAGACCTGGCATTACTCATAATTGCTAACATTTACTACACATTCATACAGAGGCCATGCTGTAGCTAGGTGTTTCTGGGCTGAGAATGTATTACTCATTTAGAACTAGTACCTCGGACTCTGATTATGGGCCTTGCTGTGTGTAAGGAACAGCACTGCCTTAGCGTGAAGCCTAGCCTACTGTCAGTGCTCAGAGAGCTCTGACACCAACAAATGGTTTTTCTACAAAGAATCACATAATGTTTGGGTTATAAAAGTAGGGCAGTGCTAACTGGATGTCCTGAAAGGGGTAGACCTGGCATACGAAGGGATGGAGAGCAGAATTTGGAAAGCATCCAATCCTGAAACTGGGCTGGAGGGAGCATGTCCCAAGCCTGTTAGGGACTGCAGGAAATTCATGACCAGAATGAAGGTGGGGCTGGGCACCTGCAGGCAGGCTGGTCTGCTCTC--TGCCTGTGACCCTCCTCAGGGCAGGCTGTGCTGTCAACAGGTGTTGTGCAATGCCAAGCACCCATGAGAATTCCCCCTACCCTGGGGATTTGAGGCACCCCTGATCCTAGGTTCCTTCCTAGAACCCAGGTCGCCTTGGGATGACTGGGGAATTCTGGTTGACTACCCAGAGAATTCTGAAGCTTGGGAAGTTTGCAATGTTAAGTCTCAGTTCAGAGTCGGACCTGGCTCCGCACCTCTTCTGGCGGCGGCAGCAG---TCCCTATCCAGGTGCAGAGCCCTGCCCAGTGGATACTGTGTGGTCCTTCCACAAAGTTGCATCTTTGAGCCCCTCACAGAGAATCTGGAGCCTCCCAACCAGGGTGACATGAG-AAAAGATCTG--AAAAAAAGGCCCAGGTGCTTGGGGTAAGTACAGCCAAGCAAAGGGCAGAGACTGAGTGGGTGCCGGGAGGACCAT---TCACTTTGGGGACAGAGCCTTTGGTTTGGCTTAAGGAGTTCCAGGCTGCTCTGGAGGCGTCGGGGGAGCCCTCTGGGACCACCCAGTCATTTT
i colAng1.NW_012115566v1   T 48678 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            61194  480 -    242197 I
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     103734  484 -    457564 I
e cebCap1.NW_016108310v1      91266  487 +    106389 I
e rheMac8.chr4             29982330 38089 + 172585720 T
e nomLeu3.chr1a            74479799    0 + 122973662 C

a score=8090.000000
s hg38.chr6_GL000254v2_alt   767181 3 +   4827813 CCG
s panTro5.chr6             29739576 3 + 175400573 CCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29969285 3 + 173848474 CCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5780864 3 +   6154872 CCG
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1    2647375 3 -   2996164 CCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     399045 3 +    766320 CCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28856854 3 -  71996105 CCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      20178 3 +    290775 CCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2458286 3 -   3067355 CCA
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            61194 480 -    242197 I
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     103734 484 -    457564 I
e cebCap1.NW_016108310v1      91266 487 +    106389 I
e macFas5.chrUn_KE146120      21175 1000 +     27237 M
e rheMac8.chr4             29982330 38089 + 172585720 T
e nomLeu3.chr1a            74479799 0 + 122973662 C

a score=6849127.000000
s hg38.chr6_GL000254v2_alt   767184 1822 +   4827813 CAAGAAAGTAAGAGATTTCCCAGTTTTGTGCTCATGGGGAGCATTCACCTGAGATATAAAACTTTGGCTGCTTAACTCATTTTAAGGGAATAATAACATATTTGCATACACTTTATTTGGAGGCAAAAGA---AAAAAAATAGTCTGTTGAATAAATTATTCTAGATTTTACTTCCCAGGGA-TTTTTTTTTCTTTCTAAAAATTATAGACAATTCATCTCCTATTCTCCCTTCTTGAGAAATTAACCATTTGAAAACAGATATGTGCCCTTAGTCTGCCTTCCAATATCTCTCATACGATCCATGATTTTT--AAAGAAATACAACTCCATTGCATGACCAAAGGGAGGAGGGGGAAATGGAAAGAAGGAGCTGGGCAACACAAGCACCAGGGGGAAGGGCCTGGGGCCCAGGGCCAGCACCTCCCTACTTGTGGGAGCCTCAGCTGTTCCTTCAATCCCCAGGCCACACCTAACCTTGGGTTGAAAAGTGCTTTCTGGGCTGACTCCGCTGTTAGAACAGGTAGGAGGTTGCTTGGTAAATGTTGCAAGAATGTGAACTCTTGTGGTAGAAATATTCTGAGGCTGATTCAGAGGCTGCCTGGGACCCCGTCACAGCTCTGGGGTCTGTCTCCCACAAGGAGCCATGCCCCGAACAGAGGTACCTGTGTCCACTCATCCTGCAGAGAGTGGGAGCCAGTTCCTGCCCCACCTGCTGTCTCCTAAGTGCTTCTTTGTGCCCAGGAGGGAGAGGGAGCAAAGGGCATGGGAACCTCCTGGGCTGTGACCAGTCATCACCTGGGATCCCACTGCCACAGCTCAGAGCTAAAGACAGAAACACCCAGCATTTCACTGCACGCTGATCTCAGCCAGCACTGGGAAGGGCTGGGAGCATGTCCTGCGTGCTTGGTTTCCCATGCCCCTGAGACGCTTTTCCTGCTTCCGCACTATCTCCTTGGGTTGCACAGAGAGTTCCAGCACTCCGCTTCCCTGGGGAAACTGACAATGACTGGCCCTTGATTGACTCACCCAGTGAGttggtttcctggggccatggtaacaaactaccacaaaccagatggctttaaaaaaaaaa--------aacaaaa-aaaaaacaaaacaaaacagaaactcatgctctcccaattctggagg---ccagaggccatagtctgaaatccaggtctgggcagggccaggctttctctcccagctctggtgtatcctggcagtccttggctctccttggttgcagctgcatccctcccacctctgcctccgtttttgtgtgacattctctctgccagcatctgcc-tgtttctcttgtcttgtacctacaccagtcatactggattaaaggccctccctgctccactctgatctcatcttaactgacatcccaatgacatctacaaataccctatttccaaagaagatcacattcccaggtatcaggggttaggacttgaacatatctttctgaggtcaCACCAGGTGACCCTTCTTC-CCTAACAGACCATCCAGATCCTCTGTGGCTTTGCAGTTATGAGCATGGGGATCCTTTTGGCATGTACTTCCTTTCCCTGTCACTTTGGCCCAGTGGTTCTCACCTTGGTGAGGTCTGGATACCCATTCGTAGGAGCCAAGTATGTGAGTAGGATGGGTGTTCATGGAGGGTGGTCTCTGGGATGGAGCAGGGCACAGACAACTGATATGCTACCTAGCAATGTCTCTGTGGAGAGCAAAGATGCAGGAATGGAACTTGTTTTGAGGGCAATCAGCCAGGAGTGAGAGAAGGCCTGGCAGGAGAAGGGGTTTTGCCAATGGGAACAGAATTG
s panTro5.chr6             29739579 1796 + 175400573 CAAGAAAGCAAGAGATTTCCCAGTTTTGTGCTCATGGGGAGCATTCACCTGAGATATAAAACTTTGGCTGCTTAACTCATTTTAAGGAAATAATAACATATTTGCATACACTTTATTTGGAGGCAAAAGA---AAAAAAATAGTCTGTTGAATAAATTATTCTAGATTTTACTTCCCAGGGA-TTTTTTTT-CTTTCTAAAAATTATAGACACTTCATCTCCTATTCTCCCTTCTTGAGAAATTAACCATTTGAAAACAGATATGAGCCCTTAGTCTGCCTTCCAATATCTCTCATACGATCCATGATTTTT--AAAGAAATACAACTCCATTGCATGACCAAAGGGAGGAGGGGGGAATGGAAAGAAGGAGCTGGGCAACACAAGCACCAGGGGGAAAGGCCTGGGGCCCAGGGCCAGCACCTCCCTACTTGTGGGAGCC--------------------------ACACCTAACCTTGGGTTGAAAAGTGCTTTCTGGGCTGACTCCGCTGTTAGAACAGGTAGGACGTTGCTTGGTAAATGTTGCAAGAATGTGAACTCTTGTGGTAGAAATATTCTGAGGCTGATTCAGAGGCTGCCTGGGACCCCGTCACAGCTCTGGGGTCCCTCTCCCACAAGGAGCCATGCCCCGAACAGAGGTACCTGTGTCCACTCATCCTGCAGAGAGTGGGAGCCAGTTCCTGCCCCACCTGCTGTCTCCTAAGTGCTTCTTTGTGCCCAGGAGGGAGAGGGAGCAAAGGGCAAGGGAACCTCCTGGGCTGTGACCAGTCATCACCTGGGATCCCACTGCCACAGTTCAGAGCTAAAGACAGAAACACCCAGCATTTCACTGCACGCTGATCTCAGCCAGCACTAGGAAGGGCTGGGAGCATGTCCTGCGTGCTCGGTTTCCCATGCCCCTGAGACACTTTTCCTGCTTCTGCACTATCTCCTTGGGTTGCACAGAGAGTTCCAGCACTCCGCTTCCCTGGGGAAACTGACAATGACTGGCCCTTGATTGACTCACCCAGTGAGttggtttcctggggccatggtaacaaactaccacaaaccagatggctttaaaaaaacaac-------aacaaca-acaacaaaaaacaaaacagaaactcatgctctcccaattctggagg---ccagaggccatagtctgaaatccaggtctgggcagggccaggctttctctcccagctgtggtgtatcctggcagtccttggctctccttggttgcagctgcatccctcccacctctgcctccgtttttgtgtgacattctctctgccagcatctgcc-tgtttctcttgtcttgtacctacaccagtcatactggattaaaggccctccctgctccactctgatctcatcttaactgacatcccaatgacatctacaaataccctatttccaaagaagatcacattcccaggtatcaggggttaggacttgaacatatctttctgaggTCACACCAGGTGACCCTTCTTC-CCTAACAGACCATCCGGATCCTCTGTGGCTTTGCAGTTATGAGCATGGGGATCCTTTTGGCATGTACTTCCTTTCCCTGTCACTTTGGCCCAGTGGTTCTCACCTTGGTGAGGTCTGGATACCCATTCGTAGGAGCCAAGTGTGTGAGTAGGATGGGTGCTCATGGAGGGTGGTCTCTGGGATGGAGCAGGGCACAGACAACTGATATGCTACCTAGCAATGTCTCTGTGGAGAGCAAAGATGCAGGAATGGAACTTGTTTTGAGGGCAATCAGCCAGGAGTGAGAGAAGGCCTGGCAGGAGAAGGGGTTTTGCCAATGGGAACAGAATTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29969288 1819 + 173848474 CAAGAAAGCAAGAGATTTCCCAGTTTTGTGCTCATGGGGAGCATTCACCTGAGATATAAAACTTTGGCTGCTTAACTCATTTTAAGGAAATAATAACATATTTGCATACACTTTATTTGGAGGCAAAAG----AAAAAAATAGTCTGTTGAATAAATTATTCTAGATTTTACTTCCCAGGGA-TTTTTTT--CTTTCTAAAAATTATAGACACTTCATCTCCTATTCTCCCTTCTTGAGAAATTAACCATTTGAAAACAGATATGTGCCCTTAGTCTGCCTTCCAATATCTCTCATACGATCCATGATTTTT--AAAGAAATACAACTCCATTGCATGACCAAAGGGAGGAGGGGGGAATGGAAAGAAGGAGCTGGGCAACACAAGCTCCAGGGGGAAGGGCCTGGGGCCCAGGGCCAGCACCTCCCTACTTGTGGGAGCCTCAGCTGTTCCTTCAATCCCCATGCCACACCTAACCTTGGGTTGAAAAGTGCTTTCTGGGCTGACTCCGCTGTTAGAACAGGTAGGACGTTGCTTGGTAAATGTTGCAAGAATGTGAACTCTTGTGGTAGAAATATTCTGAGGCTGATTCAGAGGCTGCCTGGGACCCCGTCACAGCTCTGGGGTCCCTCTCCCACAAGGAGCCATGCCCCGAACAGAGGTACCTGTGTCCACTCATCCTGCAGAGAGTGGGAGCCAGTTCCCGCCCCACCTGCTGTCTCCTAAGTGCTTCTTTGTGCCCAGGAGGGAGAGGGAGCAAAGGGCAAGGGAACCTCCTGGGCTGTGACCAGTCATCACCTGGGATCCCACTGCCACAGTTCAGAGCTAAAGACAGAAACACCCAGCATTTCACTGCACGCTGATCTCAGCCAGCACTAGGAAGGGCTGGGAGCATGTCCTGCGTGCTCGGTTTCCCATGCCCCTGAGACACTTTTCCTGCTTCTGCACTATCTCCTTGGGTTGCACAGAGAGTTCCAGCACTCCGCTTCCCTGGGGAAACTGACAATGACTGGCCCTTGATTGACTCACCCAGTGAGttggtttcctggggccatggtaacaaactaccacaaaccagatggctttaaaacaacaac-------aacaaca-acaaca-acaacaaaacagaaactcatgctctcccaattctggagg---ccagaggccatagtctgaaatccaggtctgggcagggccaggctttctctcccagctctggtgtatcctggcagtccttggctctccttggttgcagctgcatccctcccacctctgcctccgtttttgtgtgacattctctctgccagcatctgcc-tgtttctcttgtcttgtacctacaccagtcatactggattaaaggccctccctgctccactctgatctcatcttaactgacatcccaatgacatctacaaataccctatttccaaagaagatcacattcccaggtatcaggggttaggacttgaacatatctttctgaggTCACACCAGGTGACCCTTCTTC-CCTAACAGACCATCCGGATCCTCTGTGGCTTTGCAGTTATGAGCATGGGGATCCTTTTGGCATGTACTTCCTTTCCCTGTCACTTTGGCCCAGTGGTTCTCACCTTGGTGAGGTCTGGATACCCATTCGTAGGAGCCAAGTGTGTGAGTAGGATGGGTGCTCATGGAGGGTGGTCTCTGGGATGGAGCAGGGCACAGACAACTGATATGCTACCTAGCAATGTCTCTGTGGAGAGCAAAGATGCAGGAATGGAACTTGTTTTGAGGGCAATCAGCCAGGAGTGAGAGAAGGCCTGGCAGGAGAAGGGGTTTTGCCAATGGGAACAGAATTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5780867 1829 +   6154872 CAAGAAAGCAAGAGACTTCCCAGTTTTGTGCTCACGGGGAGCATTCACCTGAGATATAAAACTCTGGCTGCTTAACTCATTTTAAGGGAATAATAACATATTTGCATACACTTTATTTGGAGGCAAAAGA---AAAAAAATAGTCTGTTGAATAAATTATTCTAGATTTTACTTCCCAGGGA-TTTTTTTTTCTTTCTAAAAATTATAGACACTTCATCTCCTATTCTCCCTTCTTGAGAAATTAACCATTTGAAATCAGATATGTGCCCTTAGTCTGCCTTCCAATATCTCTCATAGGATCCATGATTTTT--AAGGAAATGCAACTCCATTGCATGACCAAAGGGAGGAGGGGGGAATGGAAAGAAGGAGCTGGGCAACACAAGCACCAGGGGGAAGGGCCTGGGGCCCAGGGCCAGCACCTCCCTACTTGTGGGAGCCTCAGCTGTTCCTTCAATCCCCAGGCCACACCTAACTTTGGGTTGAAAAGTGCTTTCTGGGCTGACTCCGCTGTTAGAACAGGTAGGACGTTGCTTGGTAAATGTTGCAAGAATGTGAACTCTTGTGGTAGAAATATTCTGAGGCTGGTTCAGAGGCTGCCTGGGACCCCGTCACAGCTCTGGGGTCCCTCTCCCGCAAGGAGCCATGCCCCGAACAGAGATACCTGTGTCCACTCATCCTGC--AGAGTGGGAGCCAGTTCCTGCCCCACCTGCTGTCTCCTAAGTGCTTCTTTTTGCCCAGGAGGGAGAGGGAGCAAAGGGCATGGGAACCTCCTGGGCTGTGACCAGTCATCACCTGGGATCCCACTGCCACAGTTCAGAGCTAAAGACAGAAACACCCAGCATTTCACTGCACGCTGATCTCAGCCAGCACTGGGAAGGGCTGGGAGCATGTCCTGCGTGCTCAGTTTCCCATGCCCCTGAGACACTTTTCCTGCTTCTGCACTATCTCCTTGGGTTGCACAGAGAGTTCCAGCACTCCGCTTCCCTAGGGAAACTGACAAGGACTGGCCCTTGATTGACTCACCCAGTGAGttagtttcctggggccatggtaacaaactaccacaaaccagatggctttaaaaacaaaacaaaacaaaacaaaacaaaaaaaaaaacaaaacagaaactcatgctctcccaattctggagg---ccagaggccagagtctgaaatccaggtctgggcagggccaggctttctctcccagctctggtggatcctggcagtccttggccctccttggttgcagctgcatccctcccacctctgcctctgtttttgtgtggcattctctctgccagcttctgcc-tgtttctcttgtcttgtacctacaccagtcatactggattaaaggccctccctgctccactctgatctcatcttaactgacatcccaatgacatctacaaataccctatttccaaagaagatcacattcccaggtatcaggggttaggacttgaacatatctttctgaggtaacaccagttgacccTTCTTC-CGTAACAGACCGTCCGGATCCTCTGTGGCTTTGCTGTTATGAGCATGGGGATCCTTTTGGCATGTACTTCCTTTCCCTGTCACTTTGGCCCAGTGGTTCTCACCTTGGTGAGGTCTGGATACCCATTCGTAGGAGCCAAGTGTGTGAGTAGGATGGGTGCTCATGGAGGGTGGTCTCTGGGATGGAGCAGGGCACAGACAACTGATATGCTACCTAGCAATGTCTCTGTGGAGAGCAAAGATGCAGGAATGGAACTTGTTTTGAGGGCAATCAGCCAGGAGTGAGAGAAGGCCTGGCAGGAGAAGGGGTTTTGCCAATGGGAACAGAATTG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      22176 1802 +     27237 CAAGAAAGCAAGAGATTCCCCAGTTTTGTGCTC-TGGGGAGCATTCACCTGAGATACAAAACTTTGGCTGCTTAACTCATTTTAAGGGAATAATAACATATTTGCATATACTTTATTTGGAGACAAAAAC---GAAAaaatagtctgttgaaaaaattattctagattttactttccagggattttttttttctttctgaaaattatagaaatctcatctcctattctcccttcttgagaaattaaccattagaaaacagacatttgcccttagtctgccttctaacatctctcatatgatccatgatttttttaaagaAATACAACTCCATTGCATGATCAAAGGGAGGAGGGGGGAATGGAAGGAAGGAGCTGGGCAACACgggcaccaggaggaagggcctggggcccagggccagcgccTACCTACTTGTGGGAGCCTCAGCTGTTCCTTCAATCTCCAGGCCACGTCTAACTTTGGGTTGAAAAGTGATTTCCCGGCTGACTCCACAGTTAGAACAGGTAAGACGTTGCTTGGTAAACGTTACATGAATGTGAAATCTTGTGGCAGAAATAATCTGAGGCTGTTTCAGAGGCCACCTGGGACCCCGTCACAGCTCTGAGGTCCCTCTCCCCCAAGGAGCCATGCCCCGAACAGAGGTACCTGTGTCCACTCATCCTGCAGAG----------AGTTCCTGCCCCACCTGCTGTCTCCTAAGTGCTTCTTTGTACTGAGGA-GGAGAGGGAGCACAGGGTATGGGCACCTCCTGGGCTGGGACCAGCCATCACCTGGGATCCCAGTGCTACGGTTCAGAGCTAAGGACAGAAACACCCAGCATTTCACTGCACGCTGATCTCAGCCAGCACTAGGAAGGGCTGGGAGCATGTCCTGTGTGCCGGGTTTCCCATGCCCCCAAGAGACTTTTTCTGTTTCTGCACCATCTCTTTGGGTTGCACAGAGAGCTCCAGCACTCTGCTTCCCTGGGGAAACTGACAAGGACTGGTCCTTGATTGCCTTATCCAGTGAGttggtttcctggggccatggtaacaaaccaccacaaaccagatgcc--taa---aacaac-------aacaaca-a--------aacaaaacagaatctcatgctctcccaattctggagaattctggaggccagagtctgaaatccaggtctgggcaaggccaggctttctctcccagttctggtggatcctggcagttgttggccctccgtggttgtggctgcatccctcccacctctgcctccgtttttgtgtgatgttctctttgccagcgtctacc-tgtttctcttgtcttgtacctacaccagtcatactggattaagggccctccctgttccactctgacctcattttaactgacatcccaatgacatctacaaataccctatttccaaagaagatcacattcccaggtatcaggggttaagacttgagcatatctttctggggacacaCCTGGTGACCCTTCTTCTCCTAACAGACCATCCAGACCCTCTGTGGCTTTGCAGTTATGAACATGGACATCATTTCGGCATGCACTTCCTTCCCCTGTCACTTTGGCCCAGTGGTTCTCACCTTGGTGATGTCTGGATACCCTTTCATAGGAGCCAAGTATGTGAGTAGGATGGGTGCTCATGGAGGGTGATCTCTGGGATGGAGCAGGGCACAGAAAATGGATATGCTACCTAGCAATGTCTCTGGGGAGAGCAAAGATGCAGGGATGGAACTTGTTATGGGAGTAATCAGCCAGAAGCAAGAGGAGGCCTGGC---AGAAGGGGTTTTGCCAACGGAAACAGAATTG
i macFas5.chrUn_KE146120   M 1000 C 0
s macNem1.NW_012011356v1    2647378 1805 -   2996164 CAAGAAAGCAAGAGATTCCCCAGTTTTGTGCTC-TGGGGAGCATTCACCTGAGATACAAAACTTTGGCTGCTTAACTCATTTTAAGGGAATAATAACATATTTGCATATACTTTATTTGGAGACAAAAAC---GAAAAAATAGTCTGTTGAAAAAATTATTCTAGATTTTACTTTCCAGGGATTTTTTTTTTCTTTCTGAAAATTATAGAAATCTCATCTCCTATTCTCCCTTCTTGAGAAATTAACCATTAGAAAACAGACACTTGCCCTTAGTCTGCCTTCTAACATCTCTCATATGATCCATGATTTTTTTAAAGAAATACAACTCCATTGCATGATCAAAGGGAGGAGGGGGGAATGGAAGGAAGGAGCTGGGCAACACGGGCACCAGGAGGAAGGGCCTGGAGCCCAGGGCCAGCGCCTACCTACTTGTGGGAGCCTCAGCTGTTCCTTCAATCTCCAGGCCACGTCTAACTTTGGGTTGAAAAGTGATTTCCCGGCTGACTCCACAGTTAGAACAGGTAAGACGTTGCTTGGTAAACGTTACATGAATGTGAAATCTTGTGGCAGAAATAATCTGAGGCTGTTTCAGAGGCCACCTGGGACCCCGTCACAGCTCTGAGGTCCCTCTCCCCCAAGGAGCCATGCCCCGAACAGAGGTACCTGTGTCCACTCATCCTGCAGAG----------AGTTCCTGCCCCACCTGCTGTCTCCTAAGTGCTTCTTTGTACTGAGGA-GGAGAGGGAGCACAGGGTATGGGCACCTCCTGGGCTGGGACCAGCCATCACCTGGGATCCCAGTGCTACGGTTCAGAGCTAAGGACAGAAACACCCAGCATTTCACTGCACGCTGATCTCAGCCAGCACTAGGAAGGGCTGGGAGCATGTCCTGCGTGCCGGGTTTCCCATGCCCCCAAGAGACTTTTTCTGTTTCTGCACCATCTCTTTGGGTTGCACAGAGAGCTCCAGCACTCTGCTTCCCTGGGGAAACTGACAAGGACTGGTCCTTGATTGCCTTATCCAGTGAGttggtttcctggggccatggtaacaaactaccacaaaccagatgcc--taaaacaacaac-------aacaaca-a--------aacaaaacagaatctcatgctctcccaattctggagaattctggaggccagagtctgaaatccaggtctgggcaaggccaggctttctctcccagttctggtggatcctggcagttgttggccctccgtggttgtggctgcatccctcccacctctgcctccgtttttgtgtgatgttctctttgccagcgtctacc-tgtttctcttgtcttgtacctacaccagtcatactggattaagggccctccctgttccactctgacctcattttaactgacatcccaatgacatctacaaataccctatttccaaagaagatcacattcccaggtatcaggggttaagacttgagcatatctttctggggacacaCCTGGTGACCCTTCTTCTCCTAACAGACCATCCAGACCCTCTGTGGCTTTGCAGTTATGAACATGGACATCATTTCGGCATGCACTTCCTTCCCCTGTCACTTTGGCCCAGTGGTTCTCACCTTGGTGATGTCTGGATACCCTTTCATAGGAGCCAAGTATGTGAGTAGGATGGGTGCTCATGGAGGGTGATCTCTGGGATGGAGCAGGGCACAGAAAATGGATATGCTACCTAGCAATGTCTCTGGGGAGAGCAAAGATGCAGGGATGGAACTTGTTATGGGAGTAATCAGCCAGAAGCAAGAGGAGGCCTGGC---AGAAGGGGTTTTGCCAACGGAAACAGAATTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     399048 1804 +    766320 CAAGAAAGCAAGAGATTCCCCAGTTTTGTGCTC-TGGGGAGCATTCACCTGAGATACAAAACTTTGGCTGCTTAACTCATTTTAAGGGAATAATAACATATTTGCATATACTTTATTTGGAGACAAAAAC---AAAAaaatagtctgttgaataaattattctagattttactttccaggga-tttttttttctttctgaaaattatagaaatctcatctcctattctcccttcttgagaaattaaccattagaaaacagacacttgcccttagtctgccttctaacatctctcatatgatccatgatttttttaaagaAATACAACTCCATTGCATGATCAAAGGGAAGAGGGGGGAATGGAAAGAAGGAGCTGGGCAACACgggcaccaggaggaagggcctggggcccagggccagcgccTACCTACTTGTGGGAGCCTCAGCTGTTCCTTCAATCCCCAGGCCACGTCTAAGTTTGGGTTGAAAAGTGATTTCCCGGCTGACTCTACAGTTAGAACAGGTAAGACGTTGCTTGGTAAACGTTACATGAATGTGAAATCTTGTGGCAGAAATAATCTGAGGCTGTTTCAGAGGCCACCTGGGACCCCGTCACAGCTCTGAGGTCCCTCTCCCCCAAGGAGCCATGCCCCGAACAGAGGTACCTGTGTCCACTCATCCTGCAGAG----------AGTTCCTGCCCCACCTGCTGTCTCCTAAGTGCTTCTTTGTACTGAGGAGGGAGAGGGAGCACAGGGTATGGGCACCTCCTGGGCTGGAACCAGCCATCACCTGGGATCCCAGAGCCACGGTTCAGAGCTAAGGACAGAAACACACAGCATTTCACTGCACGCTGATCTCAGCCAGCACTAGGAAGGGCTGGGAGCATGTCCTGCGTGCCGGGTTTCCCATGCCCCCAAGAGACTTTTCCTGTTTCTGCACCATCTCTTTGGGTTGCACAGAGAGCTCCAGCACTCTGCTTCCCTGGGGAAACTGACAAGGACTGGTCCTTGATTGCCTTATCCAGTGAGttggtttcctggggccatggtaacaaactaccacaaaccagatgcc--taaaacaacaac-------aacaaca-a--------aacaaaacagaatctcatgctctcccaattctggagaattctggaggccagagtctgaaatccaggtctgggcaaggccaggctttctctcccagttctggtggatcctggcagtt-ttggccctccgtggttgtggctgcatccctcccacctctgcctccgtttttgtgtgatgttctctctgccagcgtctgcc-tgtttctcttgtcttgtacctacaccagtcatactggattaagggccctccctgttccactctgacttcatcttaactgacatcccaatgacatctacaaataccctatttccaaagaagatcacattcccaggtatcaggggttaagacttgagcatatctttctggggacacaCCTGGTGACCCTTCTTCTCCTAACAGACCATCCAGACCCTCTGTGGCTTTGCAGTCATGAACATGGGCATCATTTTGGCATGCACTTCCTTCCCCTGTCACTTTGGCCCAGTGGTTCTCACCTTGGTGATGTCTGGATACCCCTTCATAGGAGCCAAGTATGTGAGTAGGATGGGTGCTCATGGAGGGTGATCTCTGGGATGGAGCAGGGCACAGAAAATGGATATGCTACCTAGCAATGTCTCTGGGGAGAGCAAAGATGCAGGGATGGAACTTGTTATGGGAGTAATCAGCCAGGAGCGAGAGGAGGCCTGGC---AGAAGGGGTTTTGCCAACGGGAACAGAATTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28856857 1793 -  71996105 CAAGAAAGCAAGAGATTTCCCAGTTTTGTGCTC-TGGGGAGCATTCACCTGAGATACAAAACTTTGGCTGCTTAACTCATTTTAAGGGAATAATAACATATTTGCATATACTTTATTTGGAGACAAAAAC---AAAAAAATAGTCTGTTGAATAAATTATTCTAGATTTTAC----------------TTTTCTTTCTGAAAATTATAGAAACTTCATCTCCTATTCTCCCTTCTTGAGAAATTAAGCATTAGAAAACAGACACTTGCCCTTAGTCTGCCTTCTAACATGTCTCATATGATCCATGATTTTTTTAACGAAATACAACTCCATTGCATGATCAAAAGGAGGAGGGGGGAATGGAAGGAAGGAGCTGGGCAACACGGGCACCAGGAGGAAGGGCCTGGGGCCCAGAGCCAGCATCTACCTACTTGCAGGAGCCTCAGCTCTTCCTTCAATCCCCAGGCCACGTCTAACTTTGGGTTGAAAAGTGATTTGCCGGCTGACTCCGCAGTTAGAACAGGTAAGATGTTGCTTGGTAAACGTTACGTGAATGTGAAATCTTGTGGTAGAAATAATCTGAGGCTATTTCAGAGGCCACCTGGGACTCCATCACAGCTCTGAGGTCCCTCTCCCCCAAGGAGCCATGCCCCGAACAGAGGTACCTGTGTCCACTCATCCTGCAGAG----------AGTTCCTGCCCCACCTGCTGTCTCCTAAGTGCTTCTTTGTACTGAGGAGGGAGAGGGAGCACAGGGTACGGGCACCTCCTGGGCTGGGACCAGCCATCACCTGGGATCCCAGTGCCACAGTTCAGAGCTAAGGACAGAAACACCCAGCATTTCACTGCACGCTGATCTCAGCCAGCACTAGGAAGGGCTGGGAGCGTGTCCTGCGCGCCGGGTTTCCCATGCCCCCAAGAGACTTTTCCTGTTTCTGCACCATCTCCTTGGGTTGCACAGAGAGCTCCAGCACTCTGCTTCCCT-GGGAAACTGACAAGGACTGGTCCTTGATTGCCTTATCCAGTGAGttggtttcctggggccatggtaacaaactaccacaaaccagatgcc--taaaacaacaac-------aacaaca-acaac----aacaaaacagaatctcatgctctcccaattctggagaattctggaggccagagtctgaaatccaggtctgggcagggccaggctttctctcccagttctggtggatcctggcagtcgttggccctccgtggttgtggctgcatccctcccacttctgcctccgtttttgtgtgacgttctctctgccagcatctgcc-tgtttctcttgtcttgtacctacaccagtcatactggattaagggccctccctgctccactctgacctcatcttaactgacatcccaatgacatctacaaatatcctatttccaaagaagatcacattcccaggtatcaggggttaagacttgagcatatctttctggggacacaCCTGGTGACCCTTCTTCTCCTAACAGACCATCCGGACCCTCTGTGGCTTTGCAGTTATGAGCATGGGGATCATTTTGGCATGCACTTCCTTTCCCTGTCACTTTGGCCCAGTGGTTCTCACCTTGGTGATGTCTGGATACCCTTTCGTAGGAGCCAAGTATGTGAGTAGGATGGGTGCTCATGGAGGGTGATCTCTGGGATGGAGCAGGGCACAGAAGACGGATTTGCTACCTAGCAATGTCTCTGGGGAGAGCAAAGATGCAGGGATGGAACTTGTTATGGGAGTAACCAGCCAGGAGCGAGAGGAGGCCTGGC---GGAAGGGGTTTTGCCAACGGGAATAGAATTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      20181 1811 +    290775 CAAGAAAGCAAGAGATTCCCCAGTTTTGTGCTC-TGGGGAGCATTCACCTGAGATACAAAACTTTGGCTGCTTAACTCATTTTAAGGGAATAACAACATATTTGCATATACTTTATTTGGAGACAAAAACAAAAAAAAAATAGTCTGTTGAATAAATTATTCTAGATTTTACTTTCAAGGGA-TTTTTTTTTCTTTCTGAAAATTATAGAAATCTCATCTCCTATTCTCCCTTCTTGAGAAATTAACCATTAGAAAACAGACACTTGCCCTTAGTCTGCCTTCTAACATCTCTCATATGATCCATGATTTTTTTAAAGAAATACAACTCCATTGCATGATCAAAGGGAAGAGGGGGGAATGGAAAGAAGGAGCTGGGCAACACGGGCACCAGGAGGAAGAGCCTGGGGCCCAGGGCCAGCGCCTACCTACTTGTGGGAGCCTCAGCTGTTCCTTCAATCCCCAGGCCACGTCTAACTTTGGGTTGAAAAGTGATTTCCCGGCTGACTCCACAGTTAGAACAGGTAAGATGTTGCTTGGTAAACGTTACATGAATGTGAAATCTTGTGGCAGAAATAATCTGAGGCTGTTTCAGAGGCCACCTGGGACCCCGTCACAGCTCTGAGGTCCCTCTCCCCCAAGGAGCCATGCCCCGAACAGAGGTACCTGTGTCCACTCATCCTGCAGAG----------AGTTCCTGCCCCACCTGCTGTCTCCTAAGTGCTTCTTTGTACTGAGAAGGGAGAGGGAGCACAGGGTATGGGCACCTCCTGGGCTGGGACCAGCCATCACCTGGGATCCCAGTGCCACGGTTCAGAGCTAAGGACAGAAACACCCAGCATTTCACTGCACGCTGATCTCAGCCAGCACTAGGAAGGGCTGGGAGCATGTCCTGCGTGCCGGGTTTCCCATGCCCCCAAGAGACTTTTCCTGTTTCTGTACCATCTCTTTGGGTTGCACAGAGAGCTCCAGCACTCTGCTTCCCTGGGGAAACTGAGAAGGACTGGTCCTTGATTGCCTTATCCAGTGAGttggtttcctggggctatggtaacaaactaccacaaaccagatgcc--taaaacaacaac-------aacaaca-acaa-----aacaaaacagaatctcatgctctcccaattctggagaattctggaggccagagtctgaaatccaggtctgggcaaggctaggctttctctcccagttctggtggatcctggcagttgttggccctccatggtagtggctgcatccctcccacctctgcctccgtttttgtgtgacgttctctctgccagcgtctgcc-tgtttctcttgtcttgtacctacaccagtcagactggattaagggtcctccctgttccactctgacttcatcttaactgacatcccaatgacatctacaaataccctatttccaaagaagatcacattcccaggtatcaggggttaagacttgagcatatctttctggggacacaCCTGGTGACCCTTCTTCTCCTAACAGACCATCCAGACCCTCTGTGGCTTTGCAGTTATGAACATGGGCATCATTTTGGCATGTACTTCCTTTCCCTGTCACTTTGGCCCAGTGGTTCTCACCTTGGTGATGTCTGGATACCCCTTCATAGGAGCCAAGTATGTGAGTAGGATGGGTGCTCATGGAGGGTGATCTCTGGGATGGAGCAGGGCACAGAAAATGGATATGCTACCTAGCAATGTCTCTGGGGAGAGCAAAGATGCAGGGATGGAACTTGTTATGGGAGTAATCAGCCAGGAGCGAGAGGAGGCCTGGC---AGAAGGGGTTTTGCCAACGGGAACAGAATTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2458289 1808 -   3067355 CCAGAAGGCAAGAGATTTCCCAGTTTTGTGCTC-TGGGGAGTATTCACCTGAGATACAAAACTTTGGCTGCTTAATTCATTTTAAGGGAATAATAACATATTTGCATACACTTTATTTGGAGACAAAAAC---AAAAAAATAGTCTGTTGAATAAATTATTCTAGATTTTACTTTCTAGGGA-TTTTTTTTTCTTTCTGAAAATTAAAGAAACTTCGTCTCCTATTCTCCCTTCTTGAGAAATTAACCATTAGAAAATAGACACTTGCCCTTAGTCTGCCTTCTAACATCTCTCATATGATCCATGATTTTTTAAAAGAAATACAACTCCATTGCATGATCAAAGGGAGGAGGGGGGAATAGAAAGAAGGAGCTGGGCAACACAGGCACCAGGAGGAAGGGCCTGGGGCCCAGGGCCAGCACCTACCTACTTGTGGGAGCCTCAGCTGTTCCGTCAATCCCCAGGCCACGTCTAACTTTGGGTTGAAAAGTGATTTCCCAGCTGACTCCGCAGTTAGAACAGGTAAGACGTTGCTTGGTAAACGTTATGTGAATGTGAAATCTTGTGGTAGAAATAATCTGAGGCTATTTCAGAGGCCGCCTGGGACCCCGTCACAGCTCTGAGGTCCCTCT-CCCCAAGCAGCCATGCCCCAAATAGAGGTACCTGTGTCCACTCATCCTGCAGAG----------AGTTCCTGCCCCACCTGCTGTCTCCTAAGTGCTTCTTTGTACTGAGGAGGGAGAGAGAGCACAGGGTATGGGCACCTCCTGGGCTGGGACCAGCCGTCACCTGGGATCCCAGTGCCACGGTTCAGAGCTAAGGACAGAAACACCCAGCATTTCACTGCACGCTGATCTCAGCCAGCGCTAGGAAGGGCTGGGAGCATGTCCTGTATGCTGGGTTTCCCATGCCCCCAAGAGACTTTTCCTGTTTCTGCACCATCTCCTTGAGTTGCACAGAGAGCTCCAGCACTCTGCTTCCCTGGGGAAACTGACAAGGACTGGTCTGTGATTGCCTTATCCAGTGAGttggtttcctggggccatggtaacaaactaccacaaaccagatgcc--taaaacaacagc-------cacaaca-acaa-----aacaaaacagaatctcatgctctcccaattctggagaattctggaggccagagtctgaaatccaggtctgggcagggtcaggctttctcttccagttctggtggatcctggcagtcgttggccctccgtggttgtggctgcatccctcccacctctgcctccgtttttgtgtgacgttctctctgccagcatctgccttgtttctcttgtcttgtacctataccagtcatactggattaagggccctccctgctccactctgacctcatcttaactgacatcccaatgacatctacaaataccctatttccaaagaagatcacattcccaggtatcaggggttaagacttgagcatatctttctggggacacaCCTGGTGACCCTTCTTCTCCTAACAGACCATCCAGACCCTCTGTGGCTTTGTAGTTATAAGCACGGGGATCCTTTTGGCATGTACTTCCTTTCCCTGTCACTTTGGCCCAGTGGTTCTCACCTTGGTGATGTCTGGATACCCTTTCATAGGAGCCAAGTATGTGAGCAGGATGGGTGCTCCTGGAGGGTGGTCTCTGGGATGGAGCAGGGTACAGAAAATGGATATGCTACCTAGCAATGTCTCTGGGGAGAGCAAAGATGCAGGGATGGAACTTGTTATGGGAGTAATCAGCCAGGAGTGAGAGGAGGCCTGGC---AGAAGGGGTTTTGCCAACGGAAACAGAATTC
i colAng1.NW_012115566v1   C 0 I 3444
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            61194  480 -    242197 I
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     103734  484 -    457564 I
e cebCap1.NW_016108310v1      91266  487 +    106389 I
e rheMac8.chr4             29982330 38089 + 172585720 T
e nomLeu3.chr1a            74479799    0 + 122973662 C

a score=2992249.000000
s hg38.chr6_GL000254v2_alt   769006 780 +   4827813 ATCATCTGGCTCAAATATCAGTTCTTCCAAAATCCTCATAGTGCCATCCTCGAGGGCCCTGGGAGCCCTGCAGCTTCTCTCtggggtgacaatagcatgtgtagcctcaacagggacactataagaataaaagagtgtgctattactatttatgccatgatcacaggaatacccaggactgtccctgacacactggacatagggtcaccctaCTTCTCCCTAAGTTCAGGTGACACAAGGAGTAGGAGTGAGGTGGGCAGACAGCAAGTGAGAAATGGGGTGGACAGGGCACACAGTGGGGTGGCCAGGCTGGTGCATTTGTGGCCCTGTCTATGGGGCCAGCAGGACCAGTGGGGTCAGTAGAGCATATACTGAGCTTGAAGAGGTGGCATGGAGCACTTAGAAGCTCTATCTGCTGCTTGTCATCTCTTGGCATGTGGAAGGCCTTCTGCAGAGTTACGCTCCAGACATAGCCTCGGAGTCCTGAATATCCCCCAGGCTCCTGGAATCAAGGAGtgtcttagacggcttgagctgctttaacaaaaataccataagctgggtggcttataaacagcaagcatctattactcacagttctggaggctggaagtccaagatcgtgacaccgacagatttggtgtctggtgaaggctgttgcttgttcatagatagagcgttctcgctgtgtcctcatgtggtggaagggcagaggaatctctctgggttccttttataaaggaagtaatcccattgatgagggcttcacccttacgacct
s panTro5.chr6             29741375 780 + 175400573 ATCATCTGGCTCAAATATCAGTTCTTCCAAAATCCTCATAGTGCCATCCTCGAGGGCCCTGGGAGCCCTGCAGCTTCTCTCtggggtgacaatagcatgtgtagcctcaacagggacactataagaataaaagagtgtgctattactatttatgccatgatcacaggaatacccaggactgtccctgacacactggacatagggtcaccctaCTTCTCCCTAAGTTCAGGTGACACAAGGAGTAGGAGTGAGGTGGGCAGACAGCAAGTGAGAAATGGGGTGGACAGGGCACACAGTGGGGTGGCCAGGCTGGTGCATTTGTGGCCCTGTCTATGGGGCCAGCAGGACCAGTGGGGTCAGTAGAGCATATACTGAGCTTGAAGAGGTGGCATGGAGCACTTAGAAGCTCTATCTGCTGCTTGTCATCTCTTGGCATGTGGAAGGCCTTCTGCAGAGTTATGCTCCAGACATAGCCTCGGAGTCCTGAATATCCCCCAGGCTCCTGGAATCAAGGAGtgtcttagatggcttgagctgctttaacaaaaataccataagctgggtggcttataaacagcaagcatctattactcacagttctggaggctggaagtccaagatcgtgacaacgacagatttggtgtctggtgaaggctgttgcctgttcatagatagagcgttctcgctgtgtcctcatgtggtggaagggcagaggaatctctctgggttccttttataaaggaagtaatcccattgatgagggcttcacccttacgacct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29971107 780 + 173848474 ATCATCTGGCTCAAATATCTGTTCTTCCAAAATCCTCATAGTGCCATCCTCGAGGGCCCTGGGAGCCCTGCAGCTTCTCTCtggggtgacaatagcatgtgtagcctcagcagggacactataagaataaaagagtgtgctattactatttatgccatgatcacaggaatacccaggactgtccctgacacactggacatagggtcaccctaCTTCTCCCTAAGTTCAGGTGACACAAGGAGTAGGAGTGAGGTGGGCAGACAGCAAGTGAGAAATGGGGTGGACAGGGCACACAGTGGGGTGGCCAGGCTGGTGCATTTGTGGCCCTGTCTATGGGGCCAGCAGGACCAGTGGGGTCAGTAGAGCATATACTGAGCTTGAAGAGGTGGCATGGAGCACTTAGAAGCTCCATCTGCTGCTTGTCATCTCTTGGCATGTGGAAGGCCTTCTGCAGAGTTATGCTCCAGACATAGCCTCGGAGTCCTGAATATCCCCCAGGCTCCTGGAATCAAGGAGtgtcttagatggcttgagctgctttaacaaaaataccataagctgggtggcttataaacagcaagcatctattactcacagttctggaggctggaagtccaagatcgtgacaacgacagatttggtgtctggtgaaggctgttgcctgttcatagatagagcgttctcgctgtgtcctcatgtggtggaagggcagaggaatctctctgggttccttttataaaggaagtaatcccattgatgagggcttcacccttacgacct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5782696 780 +   6154872 ATCATCTGGCTCAAATAGCAGTTCCTCCAAAATCCTCATAGTGCCATCCTCGAGGGCCCTGGGAGCCCTGCAGCTTCTCTCtggggtgacaatagcatgtgtagcctcaacagggacactataagaataaaagagtgtgctattactatttatgccatgatcacaggaatacccaggactgtccctgacacactgaacatagggtcaccctaCTTCTCCCTAAGTTCAGGTGACACAAGGAGTAGGAGTGAGGAGGGCAGACAGCAAGTGAGAAATGGGGTGGACAGGGCACACAGTGGGGTGGCCAGGCTGGTGCATTTGTGGCCCTGTCTATGGGGCCAGCAGGACCAGTGGGGTCAGTAGAGCATATACTGAGCTTGAAGAGGTGGCATGGAGCACTTAGAAGCTCTATCTGCTGCTTGTCATCTCTTGGAATGTGGAAGGCCTTCTGCAGAGTTATGCTCCAGACATAGCCTCAGAGTCCTGAATATCCCCCAGGCTCCTGGAATCAAGGAGtgtcttagacggcttgagctgctttaacaaaaataccataagctgggtggcttataaacagcaagcatctattactcacagttctggaggctggaagtccaagatcgtgacaccgacagatttggtgtctggtgaaggctgttgcctgttcatagatagagcgttctcgctgtgtcctcatgtggtggaagggcagaggaatctctctgggttccttttataaaggaagtaatcccattgatgagggcttcacccttacgacct
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      23978 753 +     27237 ATCATCTGGCTCAAATATCAGTTCTTCCAAAATCTGCATAGTGCCATCCTTGAGGGCCCCGGGAGCCCTGCAGCTTCTCTCTGgggtgaccataccatgcgaggcctcaacagggacactataagaataaaagggtgtgctattaatacttgtgccatgacaacaggaatacctaggactgtccctgacacactggacatagggtcaccctaCTTCTCCCTAAGTTCAGGTGACACAAGGAGTAGGCGTGAGGTGGACAGACAGCAAGTGA--------------------------GGGACGGCCAGGCTGGTGCACTTGTGGCCCTGTCCATGGGGCCAGCAGGGCCAGTGGGGCCAGCAGAGCCTGTACTGAGCTTGAAGAGGTGGCATGGAGCACTTAGAAGCTCTATCTGCTGCTTGTCATCTCTTGGCATGTGGAAGGCCTTCTGCAGAGTTCTGCTCCAGACATAACCTCAGAGTACTGAATAA-CCCCATGCTCCTGGAATTAAGGAGtgtcttagacagcttgagctgctttaacaaaaacaccataagctgggtggcttataaacaacaagcatctattactcacagtcctggaggctggaagtccaagatcgagacaccagcagatttggtgtctggtgagggccattgcctgttcatagatagagccctctcactgtgtcctcacgtggtggaagggcagaggaagctctctgggttccttttataaaggaagtaatcccattgatgagggcttcacccttacgacct
i macFas5.chrUn_KE146120   C 0 M 1000
s macNem1.NW_012011356v1    2649183 753 -   2996164 ATCATCTGGCTCAAATATCAGTTCTTCCAAAATCTGCATAGTGCCATCCTTGAGGGCCCCGGGAGCCCTGCAGCTTCTCTCtggggtgaccataccatgcgaggcctcaacagggaccctataagaataaaagggtgtgctattaatacttgtgccatgacaacaggaatacctaggactgtccctgacacactggacatagggtcaccctaCTTCTCCCTAAGTTCAGGTGACACAAGGAGTAGGCGTGAGGTGGACAGACAGCAAGTGA--------------------------GGGACGGCCAGGCTGGTGCACTTGTGGCCCTGTCCATGGGGCCAGCAGGGCCAGTGGGGCCAGTAGAGCCTGTACTGAGCTTGAAGAGGTGGCATGGAGCACTTAGAAGCTCTATCTGCTCCTTGTCATCTCTTGGCATGTGGAAGGCCTTCTGCAGAGTTCTGCTCCAGACATAACCTCAGAGTACTGAATAA-CCCCATGCTCCTGGAATTAAGGAGtgtcttagacagcttgagctgctttaacaaaaacaccataagctgggtggcttataaacaacaagcatctattactcacagtcctggaggctggaagtccaagatcgagacaccagcagatttggtgtctggtgagggccattgcctgttcatagatagagccctctcactgtgtcctcacgtggtggaagggcagaggaagctctctgggttccttttataaaggaagtaatcccattgatgagggcttcacccttacgacct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     400852 779 +    766320 ATCATCTGGCTCAAATATCAGTTCTTCCAAAATCTGCATAGTGCCATCCTTGAGGGCCCCAGGAGCCCTGCAGCTTCTCTCtggggtgaccgtaccatgcgaggcctcaacacggacactataagaataaaagggtgtgctattagtatttgtgccatgacaacaggaatacctaggactgtccctgacacactggacatagggtcaccctaCTTCTCCCTAAGTTCAGGTGACACAAGGAGTAGGCGTGAGGTGGACAGACAGCAAGTGAGGAATGGGGTGGACAGGGCACACTGTGGGACGGCCAGGCTGGTGCACTTGTGGCCCTGTCCATGGGGCCAGCAGGGCCAGTGGGGCCAGTAGAGCCTGTACTGAGCTTGAAGAGGTGGCATGGAGCACTTAGAAGCTCTATCTGCTGCTTGTCATCTCTTGGCATGTGGAAGGCCTTCTGCAGAGTTCTGCTCCAGACATAACCTCAGAGTACTGAATAA-CCCCATGCTCCTGGAATTAAGGAGtgtcttagacagcttgagctgctttaacaaaaacaccataagctgggtggcttataaacaacaagcatctattactcacagtcctggaggctggaagtccaagatcgagacaccagcagatttggtgtctggtgagggccattgcctgttcatagatagagccctctcactgtgtcctcacgtggtggaagggcagaggaatctctctgggttccttttataaaggaagtaatcccattgatgagggcttcacccttacgacct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28858650 768 -  71996105 ATCATCTGGCTCAAATATCAGTTCTTCCAAAATCTGCATAGTGCCATCCTTGAGGGCCCCGGGAGCCCTGCAGCTTCTCTCtggggtgaccataccatgggaggcctcaacagggacactataagaataaaagggtgtgctattaatatttgtgccatgacaacaggaatacctaggactgtccctgacacactggacatagggtcactctaCTTCTCCCTAAGTTCAGGTGACACAAGGAGTAGGCGTGAGGTAGGCAGACAGCAAGTGACGAATGGGGTGGACAGGGCACACTGTGGGACGGCCAGGCTGGTGCACTTGTGGCCCTGTCCATGGGGCCGGCAAGGCCAGTGGAGCCAGTAGAGCCTGTACTGAGCTTGAAGAGGTGGCATGGAGCACTTAGAAGCTCTATCTGCTGCTTGTCATCTCTTGGCATGTGGAAGGTCTCCTGCAGAGTTCTGCTCCAGACATAACCTCAGAGTACTGAATAT-CCCCCTTCTCCTGGAATTAAGGAGtgtcttagacagcttgagctgctttaac-----------aagctgggtggcttataaacaacaagcatctattactcacagttctggaggctggaagtccaagatcgagacaccagcagatttggtgtctggtgagggccattgcctgttcatagatagagctctctcactgtgtcctcacatggtggaagggcagaggaagctctctgggttccttttataaaggaagtaatcccattgatgagggcttcacccttacgacct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      21992 779 +    290775 ATCATCTGGCTCAAATATCAGTTCTTCCAAAATCTGCATAGTGCCATCCTTGAGGGCCCCGGGAGCCCTGCAGCTTCTCTCtggggtgaccataccatgcgaggcctcaacagggacactataagaataaaagggtgtgctattaatatttgtgccatgacaacaggaatacctaggactgtccctgacacactggacatagggtcaccctaCTTCTCCCTAAGTTCAGGTGACACAAGGAGTAGGCGTGAGGTGGACAGACAGCAAGTGAGGAATGGGGTGGACAGGGCACACTGTGGGACGGCCAGGCTGGTGCACTTGTGGCCCTGTCCATGGGGCCAGCAGGGCCAGTAGGGCCAGTAGAGCCTGTACTAAGCTTGAAGAGGTGGCATGGAGCACTTAGAAACTCTATCTGCTGCTTGTCATCTCTTGGCATGTGGAAGGCCTTCTGCAGAGTTCTGCTCCAGACATAACCTCAGAGTACTGAATAT-CCCCATGCTCCTGGAATTAAGGAGtgtcttagacagcttgagctgctttaacaaaaacaccataaactgggtggcttataaacaacaagcatctattactcacagtcctggaggctggaagtccaagatcgagacaccagcagatttggtgtctggtgagggccattgcctgttcatagatagagccctctcactgtgtcctcacgtggtggaagggcagaggaagctctctgggttccttttataaaggaagtaatcccattgatgagggcttcacccttacgacct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2463541 775 -   3067355 ATCATCTGGCTCAAATATCAGTTCTTCCAAAATCTGCATAGTGCCATCCTTGAGGGCTCCGGGAGCCCTGTAGCTTCTCTCtggggtgaccataccatgtgtaacctcaacagggacactataagaataaaatggtgtgctattaatatttgtgccatgacaacaggaatacataggactgtccctgacacactggacatagggtcaccctaCTTCTCCCTAAGTTCAGGTGACACAAGGCGTAGGCGTGAGGTGGGCAGACAGCAAGTGAGGAATGGGGTGGACAGGGCACACTGTGGGACGGCCAGGCTGGTGCACTTGTGGCCCTGTCCATGGGGCCAGTAGGGCCAGTGGGGCCAGTAGAGACTGTACTGAGCTTGAAGAGGTGGCATGGAGCACTTAGAAGCTCTATCTGCTGCCTGTCATCTCTTGGCATGTGGAAGGCCTTCTGCAGAGTTCTGCTCCAGACCTAACCTCAGAGTACTGAATAT-CTCCATGCTCTTGGAATTAAGGAGCgtcttagagagcttgagctgctttaacaaaaacaccacaa----ggtggcttataaacaaccagcatctattactcacagttctggaggctggaagtccaagatcgagacacccgcagatttggtgtctggtgaggaccattgcctgttcatagatagagccctctcactgtgtcctcacgtggtggaagggcagaggaagctctctgggttccttttataaaggaagtattaccattgatgaggggttcacccttacgacct
i colAng1.NW_012115566v1   I 3444 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            61194 480 -    242197 I
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     103734 484 -    457564 I
e cebCap1.NW_016108310v1      91266 487 +    106389 I
e rheMac8.chr4             29982330 38089 + 172585720 T
e nomLeu3.chr1a            74479799   0 + 122973662 C

a score=926.000000
s hg38.chr6_GL000254v2_alt   769786 1 +   4827813 a
s panTro5.chr6             29742155 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29971887 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5783476 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1    2649936 1 -   2996164 g
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     401631 1 +    766320 g
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28859418 1 -  71996105 g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      22771 1 +    290775 g
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2464316 1 -   3067355 g
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            61194 480 -    242197 I
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     103734 484 -    457564 I
e cebCap1.NW_016108310v1      91266 487 +    106389 I
e macFas5.chrUn_KE146120      24731 1000 +     27237 M
e rheMac8.chr4             29982330 38089 + 172585720 T
e nomLeu3.chr1a            74479799 0 + 122973662 C

a score=861205.000000
s hg38.chr6_GL000254v2_alt   769787 213 +   4827813 ctcacctcccaaagaccccacctccagataccatcgcattggaggttaggtatttagcacatgaaatctgggggcaacagacattcaggccacagcaAGAAGCTTCAGGAGAAAGCTTTCAGTCTTGTGAAATGTGAATGAGGCTTTCCCACAGCCTAGACCTGTCTTCACGCCCCAGCCGCAGCCTCTTGCATTCACGGTGGCTTTTGAGCA
s panTro5.chr6             29742156 213 + 175400573 ctcacctcccaaagaccccacctccagataccatcgcattggaggttaggcatttagcacatgaaatctgggggcaacagacattcaggccacagcaAGAAGCTTCAGGAGAAAGCTTTTAGTCTTGTGAAATGTGAATGAGGCTTTCCCACAGCCTAGACCTGTCTTCATGCCCCAGCCGCAGCCTCTTGCATTCACGGTGGCTTTTGAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29971888 213 + 173848474 ctcacctcccaaagaccccacctccagataccatcgcattggaggttaggcatttagcacatgaaatctgggggcgacagacattcaggccacagcaAGAAGCTTCAGGAGAAAGCTTTTAGTCTTGTGAAATGTGAATGAGGCTTTCCCACAGCCTAGACCTGTCTTCATGCCCCAGCCGCAGCCTCTTGCATTCACGGTGGCTTTTGAGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5783477 213 +   6154872 ctcacctcccaaagaccccacctccagataccatcgcattggaggttaggtatttagcacatgaaatctgggggcaacagacattcaggccacagcaAGAAGCTTCAGGAGAAAGCTTTTAGTTTTGTGAAATGTGAATGAGGCTTTCCCACAGCCTAGACCTGTCTTCATGCCCCAGCCCCAGCCTCTTGCATTCACGGTGGCTTTTGAGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      25731 213 +     27237 CtcacctcccaaagaccccacctccagataccatcgcattggaggttaggcatttagcacatgaaatctggggtcagcagacattcaggccacagcaAGAAGCTTCAGGAGAAAGCTTTTAGTCTTGTGAAATATGAATGAGGCTTTCCCACAGCCTAGACCTGTCTTCACGTCCCAGCCCCAGCCTCTTGCATTCATGGTGGCTTTTGAGCA
i macFas5.chrUn_KE146120   M 1000 C 0
s macNem1.NW_012011356v1    2649937 213 -   2996164 ctcacctcccaaagaccccacctccagataccatcgcattggaggttaggcatttagcacatgaaatctggggtcagcagacattcaggccacagcaAGAAGCTTCAGGAGAAAGCTTTTAGTCTTGTGAAATATGAATGAGGCTTTCCCACAGCCTAGACCTGTCTTCACGTCCCAGCCCCAGCCTCTTGCATTCATGGTGGCTTTTGAGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     401632 213 +    766320 ctcacctcccaaagaccccacctccagataccatcgcattggaggttaggcatttagcacatgaaatctggggtcagcagacattcaggccacagcaAGAAGCTTCAGGAGAAAGCTTTTAGTCTTGTGAAATGTGAATGAGGCTTTCCCACAGCCTAGACCTGTGTTCACGTCCCAGCCCCAGCCTCTTGCATTCATGGTGGCTTTTGAGCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28859419 213 -  71996105 ctcacctcccaaagaccccacctccagataccatcgcattggaggttaggcatttagcacatgaaatctggggtcagcagacattcaggccacagcaAGAAGCTTCAGGAGAAAGCTTTTAGTCTTGTGAAATATGAATGAGGCTTTCCCACAGCCTAGACCTGTCTTCACGTCCCAGCCCCAGCCTCTTGCATTCATGGTGGCTTTTGAGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      22772 213 +    290775 ctcacctcccaaagaccccacctccagataccatcgcgttggaggttaggcatttagcacatgaaatctggggtcagcagacattcaggccacagcaAGAAGCTTCAGGAGAAAGCTTTTAGTCTTGTGAAATATGAATGAGGCTTTCCCACAGCCTAGACCTGTCTTCACGTCCCAACCCCAACCCCCTGCAGTCAAGGGGGCCTTTGAACA
i manLeu1.NW_012099233v1   C 0 I 54
s colAng1.NW_012115566v1    2464317 213 -   3067355 cttacctcctaaagaccccacctccagataccatcacattggaggttagacatttagcacatgaaatctggggtcagcagacattcgggccacagcaAGAAGCTTCAGGAGAAAGCTTTTAGTCTTGTGAAATGTGGATGAAGCTTTCCCACAGCCTAGACCTGTCTTCAGGCCCCAGCCCCAGCCTCTTGCATTCACGGTGGCTTTTGAGCA
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            61194 480 -    242197 I
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     103734 484 -    457564 I
e cebCap1.NW_016108310v1      91266 487 +    106389 I
e rheMac8.chr4             29982330 38089 + 172585720 T
e nomLeu3.chr1a            74479799   0 + 122973662 C

a score=163620.000000
s hg38.chr6_GL000254v2_alt   770000 60 +   4827813 TCCTCTGACCACTGAGTCACAAACCTCCCTGTTCCCTCTCTATCTGGCTATTTTCTTGGT
s panTro5.chr6             29742369 60 + 175400573 TCCTCTGACCACTGAGTCACAAACCTCCCTGTTCCCTCTCTATCTGGCTATTTTCTTGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29972101 60 + 173848474 TCCTCTGACCACTGAGTCACAAACCTCCCTGTTCCCTCTCTATCTGGCTATTTTCTTGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5783690 60 +   6154872 TCCTCTGACCACTGAGTCACAAACCTCCCTGTTCCCTCTCTATCTGGCTATTTTCTTGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      25944 53 +     27237 -------TCCACTGAGTCATGAACCTCCCTGTTCCCTCTCTCTCTGGCTATTTTCTTGCT
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2650150 53 -   2996164 -------TCCACTGAGTCATGAACCTCCCTGTTCCCTCTCTCTCTGGCTATTTTCTTGCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     401845 53 +    766320 -------TCCACTGAGTCATGAACCTCCCTGTTCCCTCTCTCTCTGGCTATTTTCTTGCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28859632 53 -  71996105 -------TCCACTGAGTCATGAACCTCCCTGTTCCCTCTCTCTCTGGCTATTTTCTTGCT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2464530 53 -   3067355 -------TCCACTTAGTCATGAACTTCCCTGTTCCCTCTCTATCTGGCTATTTTCTTGCT
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            61194 480 -    242197 I
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     103734 484 -    457564 I
e cebCap1.NW_016108310v1      91266 487 +    106389 I
e manLeu1.NW_012099233v1      22985 54 +    290775 I
e rheMac8.chr4             29982330 38089 + 172585720 T
e nomLeu3.chr1a            74479799  0 + 122973662 C

a score=964900.000000
s hg38.chr6_GL000254v2_alt   770060 256 +   4827813 AGGACCAGAAAAAC-TTTTTTTTATAGTCTTGCCACCATGCCATGTAGTTTTCGTACATTGCAGCTATTTCAAATTACTGCATTACCACAGAACACTTTTTCTGTAATAACCCAGAATCAACAGT-TTTTTTCTAGCTGTTAACCTGGCCTCAAAATCTTCCCTTTATTTGGGCCCCCTTTTTCTTCTGTCCTTAACTCTGACTCTGGTAGAGCCCATGGAACTGACAGTTCAAAGCCCGCGTGGCTTTTCTCTCCCC
s panTro5.chr6             29742429 256 + 175400573 AGGACCAGAAAAAC-TTTTTTTTATAGTCTTGCCACCATGCCATGCAGTTTTCGTACATTGCAGCTATTTCAAATTACTGCATTACCACAGAACACTTTTTCTGTAATAACCCAGAATCAACAGT-TTTTTTCTAGCTGTTAACCTGGCCTCAAAATCTTCCCTTTATTTGGGCCCCCTTTTTCTTCTGTCCTTAACTCTGACTCTGGAAGAGCCCATGGAACTCACAGTTCAAAGCCCGCGTGGCTTTTCTCTCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29972161 255 + 173848474 AGGACCAGAAAAAC-TTTTTTTTATAGTCTTGCCACCATGCCATGTAGTTTTCGTACATTGCAGCTATTTCAAATTACTGCATTACCACAGAACACTTTTTCTGTAATAACCCAGAATCAACAG--TTTTTTCTAGCTGTTAACCTGGCCTCAAAATCTTCCCTTTATTTGGGCCCCCTTTTTCTTCTGTCCTTAACTCTGACTCTGGAAGAGCCCATGGAACTCACAGTTCAAAGCCCGCGTGGCTTTTCTCTCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5783750 257 +   6154872 AGGACCAGAAAAACTTTTTTTTTATAGTCTTGCCACCATGCCATGTAGTTTTCGTACATTGCAGCTATTTCAAATTACTGCATTACCACAGAACACTTTTTCTGTAATAACCCAGAATCCATAGT-TTTTTTCTAGCTGTTAACCTGGCCCCAAAATCTTCCCTTTACTTGGGCCCCCTTTTTCTTCTGTCCTTAACTCTGACTCTGGAAGAGCCCATGGAACTCACAGTTCAAAGCCCGTGTGGCTTTTCTCTCCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      25997 256 +     27237 AGGACCAGAATAAC-TTTTTTTTATAGTCTTGCCACCATGCCATGTAGTTTTCATACATTGCAGCTATTTCAAATTACTGCATTTCCACAGAACCATTTTTCTGTAATAACCCAGAATCAACCGC-TTTTTTCTAGCTTTTAACCTGGCCTCAAAGTCTCCCCTCTACTTGGACCACCTTTTTCTTCTGTCCTTAACTCTGACTCCGGAAGAGCCCACAGAACTCACAGTTCAAAGCACACATGCCTTTTCTCTCCCC
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2650203 256 -   2996164 AGGACCAGAATAAC-TTTTTTTTATAGTCTTGCCACCATGCCATGTAGTTTTCATACATTGCAGCTATTTCAAATTACTGCATTTCCACAGAACCATTTTTCTGTAATAACCCAGAATCAACCGC-TTTTTTCTAGCTTTTAACCTGGCCTCAAAGTCTCCCCTCTACTTGGACCACCTTTTTCTTCTGTCCTTAACTCTGACTCCGGAAGAGCCCACAGAACTCACAGTTCAAAGCACACATGCCTTTTCTCTCCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     401898 257 +    766320 AGGACCAGAATAACTTTTTTTTTATAGTCTTGCCACCATGCCATGTAGTTTTCATACATTGCAGCTATTTCAAATTACTGCATTTCCACAGAACTGTTTTTCTGTAATAACCCAGAATCAACCGC-TTTTTTCTGGCTTTTAACCTGGCCTCAAAGTCTCCCCTCTACTTGGACCCCCTTTTTCTTCTGTCCTTAACTCTGACTCTGGAAGAGCCCACGGAACTCACAGTTCAAAGCACACATGCCTTTTCTCTCCCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28859685 256 -  71996105 AGGACCAGAATAAC-TTTTTTTTATAGTCTTGCCACCATGCCATGTAGTTTTCATACATTGCAGCTATTTCAAATTACTGCATTTCCACAGAACCATTTTTCTGTAATAACCCAAAATCAACCAC-TTTTTTCTAGCTTTTAACCTGGCCTCAAAGTCTCCCCTCTACTTGGACCCCCTTTTTCTTCTGTCCTTAACTCTGACTCTGGAAGAGCCCACGGAACTCACAGTTCAAAGCCCACATGCCTTTTCTCTCCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      23039 256 +    290775 AGAACAAAAAAAAC-TTTTTTTTATAGTCTTGCCACCATGCCATGTAGTTTTCATACATTGCAGCTATTTCAAATTACTGCATTTCCACAGAACCATTTTTCTGTAATAACCCAGAATCAACCGC-TTTTTTCTAGCTTTTAACCTGGCCTCAAAGTCTCCCCTCTACTTGGACCCCCTTTTTCTTCTGGCCTTAACTCTGACTCTGGAAGAGCCCACGGAACTCACAGTTCAAAGCACACATGCCTTTTCTCTCCCC
i manLeu1.NW_012099233v1   I 54 C 0
s colAng1.NW_012115566v1    2464583 258 -   3067355 AGGACCAGAATAACTTTTTTTTTATAGTCTTGCCACCATGCCATGTAGTTTTCATACATTGCAGCTATTTCAAATTACTGCATTTCCACAGAACCATTTTTCTGTAATAACCCAGAATCAACTGCTTTTTTTCTAGCTTTTAACCTGGCCTCAAAGTCTCCCCTCTCCTTGAACCCCCTTTTTCTTCTCTCCTTAACCCTGACTCTGGAAGAGCCCATGGAACTGACAGCTCAAAACCCACGTGGCTTTTCTCTCCCC
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            61194 480 -    242197 I
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     103734 484 -    457564 I
e cebCap1.NW_016108310v1      91266 487 +    106389 I
e rheMac8.chr4             29982330 38089 + 172585720 T
e nomLeu3.chr1a            74479799   0 + 122973662 C

a score=18960.000000
s hg38.chr6_GL000254v2_alt   770316 4 +   4827813 ACCA
s panTro5.chr6             29742685 4 + 175400573 ACCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29972416 4 + 173848474 ACCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5784007 4 +   6154872 ACCA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      26253 4 +     27237 ACCA
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2650459 4 -   2996164 ACCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     402155 4 +    766320 ACCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28859941 4 -  71996105 ACCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      23295 4 +    290775 ACCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2464841 4 -   3067355 ACCA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            61674 4 -    242197 ACCC
i saiBol1.JH378357         I 480 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     103734 484 -    457564 I
e cebCap1.NW_016108310v1      91266 487 +    106389 I
e rheMac8.chr4             29982330 38089 + 172585720 T
e nomLeu3.chr1a            74479799 0 + 122973662 C

a score=18612.000000
s hg38.chr6_GL000254v2_alt   770320 3 +   4827813 CAA
s panTro5.chr6             29742689 3 + 175400573 CAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29972420 3 + 173848474 CAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5784011 3 +   6154872 CAA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      26257 3 +     27237 CAA
i macFas5.chrUn_KE146120   C 0 C 0
s macNem1.NW_012011356v1    2650463 3 -   2996164 CAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     402159 3 +    766320 CAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28859945 3 -  71996105 CAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      23299 3 +    290775 CAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2464845 3 -   3067355 CAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            61678 3 -    242197 CAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      91753 3 +    106389 CAA
i cebCap1.NW_016108310v1   I 487 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     103734 484 -    457564 I
e rheMac8.chr4             29982330 38089 + 172585720 T
e nomLeu3.chr1a            74479799 0 + 122973662 C

a score=6315232.000000
s hg38.chr6_GL000254v2_alt   770323 1004 +   4827813 CATCTTCATCTAAATAGAGTCTTGTAACATTTACCTGCCCTCTCTCCCTTGAAAATCACTGTTCCCTGGTCCCTGTTGGGGAGCCTGGGCCTTAAGCCCCTTTGTCTTTGCCCTAGAAGAACTTCCTCTCCAGCTGAGTCAGGTTCTCATGAGATTCTAGGGGTGGCTTGGCCTCCTATATCCACTTCCCTCAACATTGGCCTGTAGCCACATATGGCCTGGACTTTGGCCCAGCTTCCAGCATGCCCAATAATGTCAGCCCTGTGGGGAAGTTCCTGGAGGTGTACAAGGACGTGACAATTCAGTGGTAGGGACA-TCGGGGTGCTTGTTCATGTGGAAACTGACTTTACCATTTTCCTCTTTTCTGAGTAGTTTATCATTTCTGGATTGCTGTCTGTCA-TTTTGGGAAGAAAATCAAACAAGCATCTGGTGAGTATAGGAACAACAGTGCCTCACTTACTAAAAAGAGACTTTAGCGGAACCTCATCCAGTTGGATCTTTCCAAGGTTCAGACAAAGGAACTGAACCCCAGGTTGCTGACAAGTGTCCTTTGGTCAGTGGCCCTGTGGAAGTACACAGGGCCCACTGATCTGGGGGACACCTTTCATGATCCTCATTTTGAAGAGAGTCCTGTACCCTCTCCAGGCTCTGGGTGGCTTTATGGGAAAATTCTGCCTCATCATGACACCCTTTGGTGTTCACTGACCACCGGGGTTCAGGTCCTTGGTGAGCACAGGGGAAAGAGGACAGTGAGAGCATGGGCTGTTAGTTGTGCACCACAGCCTGG-------GTGAGAAAAGCATCAATCAAAAGAGATGAGCCTTGCTGGTGGGGGCCAGGAA------------------------------------------GGGTGCAGAGTGAAAAGGGGGTGTTCAGTGATGGGTGCACATCTGATTGACAAACTTTTGCAGAATCATTTCCAGGCCTTTCTTAGGAGGCTAAGAGGCATGGGTTGGGGGACAGAGATGGGTATGGTGGAGATTCTGGTGACCT-GGGATTTGGGGGTCTCCCTG
s panTro5.chr6             29742692 1004 + 175400573 CATCTTCATCTAAATAGAGTCTTGTAACATTTACCTGCCCTCTCTCCCTTGAAAATCACTGTTCCCTGGTCCCTATGGGGGAGCCTGGGCCTTAAGCCCCTTTGTCTTTGCCCTAGAAGAACTTCCTCTCCAGCTGAGTCAGGTTCTCATGAGATTCTAGGGGTGGCTTGGCCTCCTATATCCACTTCCCCCAACATTGGCCTGTAGCCACGTATGGCCTGGACTTTGGCCCAGCTTCCAGCATGCCCAATAATGTCAGCCCTGTGGGGAAGTTCCTGGAGGTGTACAAGGACGTGACAATTCAGTGGTAGGGACA-TCGGGGTGCTTGTTCATGGGGAAACTGACTTTACCATTTTCCTCTTTTCTGAGTAGATTATCATTTCTGGATTGCTGTCTGTCA-TTTTGGGAAGAAAATCAAACAAGCATCTGGTGAGTATAGGAACAACAGTGCCTCACTTACTAAAAAGAGACTTTAGTGGAACCTCATCCAGTTGGATCTTTCCAAGGTTCAGACAAAGGAACTGAACCCCAGGTTGCTGACAAGTGTCCTTTGGTCAGTGGCCCTGTGGAAGTACACAGGGCCCACTGATCTGGGGGACACCTTTCATGATCCTCATTTTGAAGAGAGTCCTGTACCCTCTCCAGGCTCTGGGTGGCTTTATGGGAAAATTCTGCCTCATCATGACACCCTTTGGTGTTCACTGACCACCGGGCTTCAGGTCCTTGGTGAGCACAGGGGAAAGAGGACAGTGAGAGCATGGGCTGTTAGTTGTGCACCACAGCCTGG-------GTGAGAAAAGCATCAATCAAAAGAGATGAGCCTTGCTGGTGGGGGCCAGGAA------------------------------------------GGGTGCAGAGTGAAAAGGGGGTGTTCAGTGATGGGTGCACATCTGATTGACAAACTTTTGCAGAATCATTTCCAGGCCTTTCTTAGGAGGCTAAGAGGCATGGGTTGGGGGACAGAGATGGGTATGGTGGAGATTCTGGTGACCT-GGGATTTGGGGGTCTCCCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29972423 1004 + 173848474 CATCTTCATCTAAATAGAGTCTTGTAACATTTACCTGCCCTCTCTCCCTTGAAAATCACTGTTCCCTGGTCCCTATGGGGGAGCCTGGGCCTTAAGCCCCTTTGTCTTTGCCCTAGAAGAACTTCCTCTCCAGCTGAGTCAGGTTCTCATGAGATTCTAGGGGTAGCTTGGCCTCGTATATCCACTTCCCCCAACATTGGCCTGTAGCCACGTATGGCCTGGACTTTGGCCCAGCTTCCAGCATGCCCAATAATGTCAGCCCTGTGGGGAAGTTCCTGGAGGTGTACAAGGACGTGACAATTCAGTGGTAGGGACA-TCGGGGTGCTTGTTCATGTGGAAACTGACTTTACCATTTTCCTCTTTTCTGAGTAGATTATCATTTCTGGATTGCTGTCTGTCA-TTTTGGGAAGAAAATCAAACAAGCATCTGGTGAGTATAGGAACAACAGTGCCTCACTTACTAAAAAGAGACTTTAGTGGAACCTCATCCAGTTGGATCTTTCCAAGGTTCAGACAAAGGAACTGAACCCCAGGTTGCTGACAAGTGTCCTTTGGTCAGTGGCCCTGTGGAAGTACACAGGGCCCACTGATCTGGGGGACACCTTTCATGATCCTCATTTTGAAGAGAGTCCTGTACCCTCTCCAGGCTCTGGGTGGCTTTATGGGAAAATTCTGCCTCATGATGACACCCTTTGGTGTTCACTGACCACCGGACTTCAGGTCCTTGGTGAGCACAGGGGAAAGAGGACAGTGAGAGCATGGGCTGTTAGTTGTGCACCACAGCCTGG-------GTGAGAAAAGCATCAATCAAAAGAGATGAGCCTTGCTGGTGGGGGCCAGGAA------------------------------------------GGGTGCAGAGTGAAAAGGGGGTGTTCAGTGATGGGTGCACATCTGATTGACAAACTTTTGCAGAATCATTTCCAGGCCTTTCTTAGGAGGCTAAGAGGCATGGGTTGGGGGACAGAGATGGGTATGGTGGAGATTCTGGTGACCT-GGGATTTGGGGGTCTCCCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5784014 1003 +   6154872 CATCTTCATCTAAATAGAGTCTTGTAACATTTACCTGCCCTTTCTCCCTTGAAAATCACTGTTCCCTGGTCCCTATGGGGGAGCCTGGGCCTTAAGCCCCTTTGTCTTTGCCCTAGAAGAACTTCCTCTCCAGCTGAGTCAGGTTCTCATGAGATTCTAGGGGTGGCTTGGCCTCTTATATCCACTTCCCCCAACATTGGCCTGTAGCCACATATGGCCTGGACTTTGGCCCAGCTTCCAGCATGCCCAATAATGTCAGCCCTGTGGGGAAGTTCCTGGAGGTGTACAAGGACGTGACAATTCAGTGGTAGGGACA-TCGGGGTGCTTGCTCATGTGGAAACTGACTTTACCATTTTCCTCTTTTCTGAGTAGTTTATCATTTCTGGATTGCTGTCTGTCA-TTTTGGGAAGAAAATCAAACAAGCATCTGGTGAGTATAGGAACAACAGTGCCTCACTTACTAAAaagagactttagcggaacctcatccagttggatctttccaaggttcagataaaggaactgaaccccagGTTGCTGACAAGTGTCCTTTGGTCAGTGGCCCTGTGGAAGTACACAGGGCCCACTGATCT-GGGGACACCTTTCATGATCCTCATTTTGAAGAGAGTCCTGTACCCTCTCCAGGCTCTGGGTGGCTTTATGGGAAAATTCTGCCTCATCATGACACCCTTTGGTGTTCACTGACCACCGGGGTTCAGGTCCTTGGTGAGCACAGGGGAAAGAGGACAGTGAGAGCATGGGCTGTTTGTTGTGCACCACAGCCTGG-------GTGAGAAAAGCATCAATCAAAAGAGATGAGCCTTGCTGGTGGGGGCCAGGAA------------------------------------------GGGTGCAGAGTGAAAAGGGGGTGTTCAGTGATGGGTGCACATCTGATTGATAAACTTTTGCAGAATCATTTCCAGGCCTGTCTTAGGAGGCTAAGAGGCATGGGTTGGGGGACAGAGATGGGTATGGTGGAGATTCTGGTGACCT-GGGATTTGGGGGTCTCCCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chrUn_KE146120      26260  977 +     27237 TATCTTCATCCAGATAGAGT-TTGTAAACTTTACCTGCCCTCTCTCCCTTGAAAATCACTGTTGCCTGGTCCCCATGGGGGAGCCTAGGCCTTAAGCACCTTTGTCTTTGCCCTAGAGGAACTTCCTCTCCAGCTGAGTCAGGTCCTCATGAGATTCTAGGGGTTGCTTGGCCTCCTGTATCCACTCTCCCTAACTTTGGCCTGTAGCTACATGTGGCCTGGACTTTGGCCCAGCTTCCAACACGCCCAATAATGTCAACCCTGTGGGGAAGTTCCTGGAGGTGTATAAGGATATGACAATTCAGTTGTAGGGACA-TTGAGGTGCTTGTTCATATGGGAACTGACTTTACCATTTTCCTCTTTTCTGAGTAGTTTATCATTTCTGGATTGCTGTCCGTCA-TTTTGGGAAGACAATCAAACAACCATCTGGTGAGTACAGGAACAACAGTGCCTCGCTTACTAAAAAGGGACTTTGGTGGAACCTCATCCAGTTGGATCTTTCCCA--------------------------------------------------------------------------GGCCCACTGATTTGGGGGACTCCTTTCATGATCCCCATTTTGCAGAGAGTCCTGTACCCTCTCCAGGCTCTGGGTGGCTTTACGGGAAAATCCTGCCTCATCATGACACTCTTTGGTGTTCACTGACCACCTGGATCCAGGTCCTTGGTGACCACA-GGGAAAGAGGACAGTGAGAGCATGGGCTGTTTGTTGTGCACCACAGCCTGGAGCCTGGGCGAGAAAAGCATCAACCAAAAGAGATGAGCCTTGCTGGTAGGGGCCAGGAAGGGTTACCTGAATCCTTGTGTTGCCAGGGACAGAAAAGAATGGGGTGCAGAGTGAAAAGGGGATGTTCAGTGATGGGAACATATCTAATTGATAAACTTTTGCAAAATCATTTCCAGGCCTTTCTTAGGAGGCTGAGAGGCATGGGTTGGGGGGCAGAGGTAGGTATGGTGGAGGATCTGGTGACCT-GGGATCTGGGGGTCTCCCTG
i macFas5.chrUn_KE146120   C 0 n 0
s macNem1.NW_012011356v1    2650466  979 -   2996164 TATCTTCATCCAGATAGAGTCTTGTAAACTTTACCTGCCCTCTCTCCCTTGAAAATCACTGTTGCCTGGTCCCCGTGGGGGAGCCTAGGCCTTAAGCACCTTTGTCTTTGCCCTAGAGGAACTTCCTCTCCAGCTGAGTCAGGTCCTCATGAGATTCTAGGGGTTGCTTGGCCTCCTGTATCCACTCTCCCTAACTTTGGCCTGTAGCTACATGTGGCCTGGACTTTGGCCCAGCTTCCAACACGCCCAATAATGTCAACCCTGTGGGGAAGTTCCTGGAGGTGTATAAGGATATGACAATTCAGTTGTAGGGACA-TTGAGGTGCTTGTTCATATGGGAACTGACTTTACCATTTTCCTCTTTTCTGAGTAGTTTATCATTTCTGGATTGCTGTCCGTCA-TTTTGGGAAGACAATCAAACAACCATCTGGTGAGTACAGGAACAACAGTGCCTCGCTTACTAAAAAGGGACTTTGGTGGAACCTCATCCAGTTGGATCTTTCCCA--------------------------------------------------------------------------GGCCCACTGATTTGGGGGACTCCTTTCATGATCCCCATTTTGCAGAGAGTCCTGTACCCTCTCCAGGCTCTGGGTGGCTTTACGGGAAAATCCTGCCTCATCATGACACTCTTTGGTGTTCACTGACCACCTGGATCCAGGTCCTTGGTGACCACAGGGGAAAGAGGACAGTGAGAGCATGGGCTGTTTGTTGTGCACCACAGCCTGGAGCCTGGGCGAGAAAAGCATCAACCAAAAGAGATGAGCCTTGCTGGTAGGGGCCAGGAAGGGTTACCTGAATCCTTGTGTTGCCAGGGACAGAAAAGAATGGGGTGCAGAGTGAAAAGGGGATGTTCAGTGATGGGAACATATCTAATTGATAAACTTTTGCAAAATCATTTCCAGGCCTTTCTTAGGAGGCTGAGAGGCATGGGTTGGGGGGCAGAGGTAGGTATGGTGGAGGATCTGGTGACCT-GGGATCTGGGGGTCTCCCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     402162 1052 +    766320 TATCTTCATCCAAATAGAGTCTTGTAACCTTTACCTGCCCTCTCTCCCTTGAAAATCACTGTTCCCTGGTCCCCGTGGGGGAGCCTGGGCCTTAAGCACCTTTGTCTTTGCCCTAGAGGAACTTCCTCTCCAGCTGAGTCAGGTCCTCATGAGATTCTAGGGG-TGCTTGGCCTCCTGTATCCACTCTCCCTGACTTTGGCCTGTAGCTACATGTGGCCTGGACTTTGGCCCAGCTTCCAACACGCCCAATAATGTCAACCCTGTGGGGAAGTTCCTGGAGGTGTATAAAGATATGACAATTCAGTGGTAGGGACA-CTGTGGTGCTTGTTCATGTGGGAGCTGACTTTACCATTTTCCTCTTTTCTGAGTAGTTTATCATTTCTGGATTGCTGTCCgtca-ttttgggaagacaatcaaacaagcatgtggtgagtacaggaacaacagtgcctcacctactaaaaagggactttggtggaacctcatccagttggatctttcccaggttcatacaaaggaactGACCGCCAGGTTGCTGACAAGTGCCCTTTGGTCAGTGGCCCTGTGGAAGTACACAGGGCCCACTGATTTGGGGGACTCCTTTCATGATCCCCATTTTGCAGAGAGTCCTGTATCCTCTCCAGGCTCTGGGTGGCTTTATGGGAAAATCCTGCCTCATCATGACACTGTTTGGTGTTCAGTGACCACCTGGATCCAGGTCCTTGGTGACCGCAGGGGAAAGAGGATAGTGAGAGCATGGGCTGTTTGTTGTGCACCACAGCCTGGAGCCTGGGCGAGAAAAGCATCAACCGAAAGAGATGAGCCTTGCTGGTAGGGGCCAGGAAGGGTTACCTGAATCCTTGTGTTGCCAGGGACAGAAAAGAATGGGGTGCAGAGTGAAAAGGGGGTGTTCAGTGATGGGAGCATATCTAATTGATAAACTTTTGCAAAATCATTTCCAGGCCTTTCTTAGGAGGCTGAGAGGCATGGGTTGGGGGGCAGAGGTAGGTATGGTGGAGGATCTGGTGACCT-GGGATCTGGGGGTCTCCCTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28859948 1038 -  71996105 TATCTTCGTCCAAATAGAGTCTTGTAACCTTTACCTGCCCTCTCTCCCTTGAAAATCACTGTTCCCTGGTCCCCGTGGGGGAGCCTGGGCCTTAAGCACCTTTGTCTTTGCCCTAGAGGAACTTCCTCTCCAGCTGAGTCAGGTCCTCATGAGATTCTAGGGGTTGCTTGGCCTCCTGTATCCACTCTCCCTGACTTTGGCCTGTAGCTACATGTGGCCTGGACTTTGGCCCAGCTTCCAACATGCCCAATAATGTCAACCCTGTGGGGAAGTTCCTGGAGGTGTATAAGGATATGACAATTCAGTGGTAGGGACA-TTGAGGTGCTTGTTCATATGGGAACTGACTTTACCATTTTCCTCTTTTCTGAGTAGTTTATCATTTCTGGATTGCTGTCCGTCA-TTTTGGGAAGACAATCAAACAAGCATCTGGTGAGTACAGGAACAACAGTGCCTCGCTTACTAAAAAGGGACTTTGGTGGAACCTCATCCAGTTGGATCTTTCCCAGGTTTATACAAAGGAACTGACCCCCAGGTTGCTGACAAGTGCCCTTTGGTCAGTGGCCCTGTGTAAGTACACAGGGCCCACTGATTTGGGGGACTCCTTTCATGATCCCCATTTTGCAGAGAGTCCTGTACCCTCTCCAGGCTCTGGGCGGCTTTACGGGAAAATCCTGCCTCATCATGACACTCTTTGGTGTTCACTGACCACCTGGATCCAGGTCCTTGGTGACCACAGGGGAAAGAGGACAGTGAGAGCATGGGCTGTTTGTTGTGCACCACAGCCTGG---------------AGCATCAACCAAAAGAGATGAGCCTTGCTGGTAGGGGCCAGGAAGGGTTACCTGAATCCTTGTGTTGCCAGGGACAGAAAAGAATGGGGTGCAGAGTGAAAAGGGGGTGTTCAGTGATGGGAACATATCTAATTGATAAACTTTTGCAAAATCATTTCCAGGCCTTTCTTAGGAGGCAGAGAGGCATGGGTTGGGGGGCAGAGGTAGGTATGGTGGAGGATCTGGTGACCT-GGGATCTGGGGGTCTCCCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      23302 1042 +    290775 TATCTTCATCCAAATAGAGTCTTGTAACCTTTACCTGCCCTCTCTCCCTTGAAAATCACTGTTCCCTGGTCCCCGTGGGGGAGCCTGGGCCTTAAGCACCTTTGTCTTTGCCCTAGAGGAACTTCCTCTCCAGCTGAGTCAGGTCCTCATGAGATTCTAGGGGTTGCTTGGCCTCCTGTATCCACTCTCCCTGACTTTGGCCTGTAGCTACATGTGGCCTGGACTTTGGCCCAGCTTCCAACATGCCCAATAATGTCAACCCTGTGGGGAAGTTCCTGGAGGTGTATAAGGATATGACAATTCAGTGGTAGGGACA-TTGAGGTGCTTGTTCATGTGGGAACTGACTTTACCATTTTCCTCTTTTCTGAGTAGTTTATCATTTCTGGATTGCTGTCCGTCA-TTTTGGGAAGACAATCAAACAAGCATGTGGTGAGTACAGGAACAACAGTGCCTCACCTACTAAAAAGGGACTTTGGTGGAACCTCATCCAGTTGGATCTTTCCCAGGTTCATACAAAGGAACTGACCGCCAGGTTGCTGACAAGTGCCCTTTGGTCAGTGGCCCTGTGTA-----------CTTACTGATTTGGGGGACTCCTTTCATGATCCCCATTTTGCAGAGAGTCCTGTACCCTCTCCAGGCTCTGGGTGGCTTTACGGGAAAATCCTGCCTCATCATGACACTCTTTGGTGTTCACTGACCACCTGGATCCAGGTCCTTGGTGACCGCAGGGGAAAGAGGACAGTGAGAGCATGGGCTGTTTGTTGTGCACCACAGCCTGGAGCCTGGGCGAGAAAAGCATCAACCAAAAGAGATGAGCCTCGCTGGTAGGGGCCAGGAAGGGTTACCTGAATCCTTGTGTTGCCAGGGACATAAAAGAATGGGGTGCAGAGTGAAAAAGGGATGTTCAGTGATGGGAACATATCTAATTGATAAACTTTTGCAAAATCATTTCCAGGCCTTTCTTAGGAGGCTGAGAGGCATGGGTTGGGGGGCAGAGGTAGGTATGGTGGAGGATCTGGTGACCT-GGGATCTGGGGGTCTCCCTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2464848 1052 -   3067355 CATCTTCATCCAGATAGAGTCTTGTAACCTTTACCTGCCCTCTCTGCCTTGAAAATCACGGTTCCCTGGTCCCCGTGGGGGAGCCTGGGCCTTAAGCACCTTTGTCTTTGCCCTAGAGGAACTTCCTCTCTGGCTGAGTCAGGTCCTCATGAGATTCTAGGGGTTGCTTGGCCTCCTGTATCCACTCTCCCTGACTTTGGCCTGTAGCTACATGTGGCCTGGACTTTGGCCCAGCTTCCAACATGCCCAATAATGTCAACCCTGTGGGGAAGTTCCTGGAGGTGTATAAGGATATGACAATTCAGTGGTAGGAACA-TTGAGGTGCTTGCTCATGTGGGAACTGACTTTACCATTTTCCTCTTTTCTGAGTAGTTTATGATTTCTGGATTGCTGTCCATCA-TTTTGGGAAGAAAATCAAACAAGCATCTGGTGAATACAGGAACAACAGTGCCTCACTTACTAAAAAGGGACTTTGGTGGAACCTCATCCAGTTGGATCTTT-CCAGGTTCATACAAAGGAACTGACCCCCAGGTGGCTGACAAGTGCCCTTTGGTCAGTGGCCCTGTGGAAGTACACAGGTCCCACTGATTTGGGGGACTCCTTTCATGATCCCCATTTTGCCGAGAGTCCTGTACCCTCTCCAGCCTCTGGGTGGCTTTATGGGAAAATCCTGCCTCATCATGACACCCTTTGGTGTTCACTGACCACCTGGATCCAGGTCCTTGGTGACCGCAGGGGAAAGAGGACAGTGAGAGCATGGGCTGTTTGTTGTGCACCACAGCCTGGAGCCTGGGCAAGAAAAGCATCAATCAAAAGAGATGAGCCTTGCTGGTAGGGGCCAGGAAGGGTTACCTGAATCCTTGTGTTGCCAGGGACAGAAAAGAATGGGGTGCAGAGTGAAAAGGGGGTGTTCAGTGATGGGAGCATATCTAATTGATAAACTTTTGCAAAATCATTTCCAGGCCTTTCTTAGGAGGCTGAGAGGCATGGGTTGGGGAGCAGAGGTAGGTATGGTGGAGGATCTGGTGACCT-GGGATCCGGGGGTCTCCCTG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            61681 1042 -    242197 CATCTTCATCCAAATAGTGTCTTGTAACCTTTACCTGCCCTCTCTTCCTTGAAAATCACTGTTCCCTGGTCCCCATGGGGGAGCCTGGGCCTTAAGCCACTTTATCTTTACTCTGAAGGAAACTCCTCTCCAGCTGAGTCAGGTCCTCATGAGATTCTAGGGGTTGCTTGGCCTCCTATGTCCACTCCCCACAACATTAGCCTGTAGCCTCATAGGGACCAGACTTTAGCCCAGCTTCCAACATACCCAACAATGTCAACCCTGTGGGGAAGTTCCTGGAGGTGTTTAAGGATGTAACAATTCAGTGATAGGGACATTTGGGGTGTTTGTCTATGTGGAAACTGACCTTACCATTTTCCTATTTTCTGAGTAGTTTATCATTTCTTGATTGCTGTCTGTCA-TTTTGGGAAGAAAATCAAATAAGCATCTTGTGAGTATAAGAACAACAGTGCCTCACTTACTAAAAAGGGACTTTGGAGGAACCTTGTCCAGTTGGATCTTTCCCAGGTTCAGACAAAGCAACCGACCTCCAGGTTGCTGACAAGTGTCCCTTGGTCAGTGGCCCTGTGGAAGTACAAAAGGCCCACTGATTTTGGGGACTCCTTTCATGATTCTAATTTTGCAGAGGGTCCTGTACCCTCTCCAGGCTATGGGTGGCTTTATGGGAAAATCCTGCCTCATCATAACCCCCTTTGGTGTTCACTGA-CACCTAGATCCAGATCCTTGGTAACCGCAGGGGAAAGGGGACAGCAAGAGCACAGTCTGT--GTTGTGCACCACAACCTGG-------GCAAGAAAAGCATCAATCAAAAGAGATGAGCCTTGCTGGTAGGGGCCAGGAAGGGTTCTCTGAATTCTTGTGTTGCCAGGGACAGAAAAGAATGTGGTGCAGAGTGAAAAGGGGGTTTTGGGTGATGGGTGCACATCTGATTGAT-AATTTATGCAGAATCGTTTTCAAGTCTCTCTTAGGAGGCTAAGGGGCATGGGTTGGGGATCAAAGGT-GGTATAGTAGAGGGTCTGGTGACCT-GGGATCTGGGGGTCTCACTG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      91756 1043 +    106389 CATCTTCATCCAAATAGTGTCTTGTAACCTTTACCTGCCCTCTCTTCCTTGAAGACCAGTGTTCCCTGGTCCCCATGGGGGAGCCTGGGCCTTAAGCCACTTTGTATTTACTCTGAAGGAACCTCCTCTCCAGCTGAGTCAGGTCCTCATGAGATTCTAGGGGTTGCTTGGCCTCCTGTATCCACTCCCCCCGACATTGGCCTATAGCCGCATATGGACCAGACTTCAGCCCAGCTTCCAACATGCCCAACAATGTCAACCCTGTGGGGAAGTTTCTGGAGGTGTTTAAGGATGTGACAATTCAGTGGTAGGGACATTTGTGGTGCTTGTCTATGTGGAAACTGACCTTACCATTTTCCTATTTTCTGAGTAGTTTATCATTTCTTGATTGCTGTCTGTCA-TTTTGGGAAGAAAATCAAATAAGCACCTTGTGAGTATAGGAACAACAGTGCCTCACTTACTAAAAAGGGATTTTGGGGGAACTTCATCCAGTCCGGTCTTTCCCAGGTTCAGACAAAGCAACTGACCTCCAGGTTGCTGACAAGTGTCCCTTGGTCAGTGGCCCTGTGGAAGTACACAAGGCCCACTAATTTTGGAGACTCCTTTCATGATCCTCATTTTGCAGAGGGTCCTGTACCCTCTCCAGGCTCTGGGTGAATTTATGGGAAAATCTTGCCTCATCATAACACCCTTTGGTGTTCACTGA-CACCTAGATCCAGATCCTTGGTAACCGCAGGGGAAAGGGGACAGCAAGAGCACAGTCTGT--GTTGTGCACCACAACCTGG-------GCAAGAAAAGCATCAATCAAAAGAGATGAGTCTTGCCAGTGGGGGCCAGGAAGTGTTACCTGAATTCTTGTGTTGCCAGGGACAGAAAAGAATGCAGTGCAAAGTGAAAAGGGGGTTTTCAGTGATGGGTGCACATCTGATTGATAAACTTATGCAGAATCGTTTCCAGGCCTCTCTTA-GAGGCTAAGAGGCATGGGTTGGGGGACAAAGGT-GGTATGGTAGAGGGTCCGGTGACCTGGGGGTCTGGGGGTCTCCCAG
i cebCap1.NW_016108310v1   C 0 C 0
s aotNan1.NW_018509740v1     104218 1044 -    457564 CATCTTCATCCAAATAGTGTCTTGTAACCTTTGCCTGCCCTCTCTTCCTTGAAAATCACTGTTCCCTGGTCCCCATGGGGGAGCCTAGGCTTTAAGCCACTTTATCTTTACCCTGGAGGAACCTTCTCTCCAGCTAAGTCGGGTCCTCATGAGATTCTAGGAGTTGCTTGGCCTCCTATGTCCACTCCCCCCAACATTGGCCTGTAGCCTCATATGGACCAGACTTCAGCCCAGCTTCCAACATGCCCAACAATGTCAACCCCATGGGGAAGTTCCTGGAGGTGTTTAAGGATGTGACAATCCAGTGATAGGGACATTTGGGGTGCTTGTCTATGTGGAAACTGACCTTACCATTTTCCTATTTTCTGAGTAGTTTATCATTTCTTGATTGCTGTCTGCCATTTTTGGGAAGAAAATCAAATAAGCACCTTGTGAGTATAGGAACAACAGTGCCTCAATTACAAAATAGGGACTTTGGAGGAACCTCATCCAGTTAGATCTTTCCCAGGTTCAGACAAAGCAACTGACCTCCAGGTTGCTGACAAGTGTCCCTTGGTCAGTGGCCCTGTGGAAGTACAGAAGGCCCACTGATTTTGGGGACTCCTTTCATGATCCTCATTTTGCAGAGGGTCTTGTACCCTTTCCAGGCTCTGGGTGGCTTTATGGGAAAATCCTGCCTCATCATAACACCCTTTGGTGTTCACTGA-CACCTAGATCCAGATCCTTGGTAACCACATGGGAAAGGGGACAGTGAGAGCACAGTCTGT--GTTGTGCACCACAACCTGG-------GCAAGAAAAGCATCAATCAAAAGAGATGAGCCTTGCTGGTGGGGGCCAGGAAGGGTTACCTGAATTCTTGTGTTGCCAGGGACAGAAAAGAATGTGGTGCAGAGTGAAAAGGGGGTTTTCAGTGATGGGAGCACATCTGATTGATAAACTTATGCAGAATCATTTCCAGGTCTCTCTTAGGAGGCCAAGAGGCATGGGTTGGGGGGCAGAGGT-GGTATGGTAGAGGGTCTGGTGACCT-GGAATCTGGGGGTCTCCCTA
i aotNan1.NW_018509740v1   I 484 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e rheMac8.chr4             29982330 38089 + 172585720 T
e nomLeu3.chr1a            74479799    0 + 122973662 C

a score=779770.000000
s hg38.chr6_GL000254v2_alt   771327 143 +   4827813 TCCTG--ACACAGAAGCTGCCAAGAAACTGGCAGCCAAGCCTCAAGGTGGCAGTGCCAGGTTTGGACACTGTCATTCTCTCAGACCTCCCTCAAAGGATCAGATGCCCTTCTTCATCCCCACCCTCAGCCTCCCCTGAGCCCTCC
s panTro5.chr6             29743696 143 + 175400573 TCCTG--ACACAGAAGCTGCCAAGAAACTGGCAGCCAAGCCTCAAGGTGGCAGTGCCAGGTTTGGACACTGTCATTCTCTCAGACCTCCCTCAAAGGATCAGATGCCCTTCTTCATCCCCACCCTCAGCCTCCCCTGAGCCCTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29973427 143 + 173848474 TCCTG--ACACAGAAGCTGCCAAGAAACTGGCAGCCAAGCCTCAAGGTGGCAGTGCCAGGTTTGGACACTGTCATTCTCTCAGACCTCCCTCAAAGGATCAGATGCCCTTCTTCATTCCCACCCTCAGCCTCCCCTGAGCCCTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5785017 143 +   6154872 TCCTG--ACACAGAATCTGCCAAGAAACTGGCAGCCAAGCCTCAAGGTGGCAGTGCCAGGTTTGGACACTGTCATTCTCTCAGACCTCCCTCGAAGGATCAGATGCCCTTCTTCATCCCCACCGTCAGCCTCCCCTGAGCCCTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012011356v1    2651445 143 -   2996164 TCCTG--ACACAGAAGCTGCCAAGAAACTGGCAGCCGAGCTTCAAGGTGGCAGTGCCAGGTTTGGATGCTATCATTCTCTCAGACCTCCCTCAAAGGATCAGATGCTCTTCTtcatccccaccctcagcctcccctcagccctcC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     403214 143 +    766320 TCCTG--ACACAGAAGCTGCCAAGAAACTGGCAGCCGAGCTTCAAGGTGGCAGTGCCAGGTTTGGACGCTGTCATTCTCTCAGACCTCCCTCAAAAGATCAGATGCTCTTCTtcatccccaccctcagcctcccctcagccctcC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28860986 143 -  71996105 TCCTG--ACACAGAAGCTGCCAAGAAACTGGCAGCCGAGCTTCAAGGTGGCAGTGCCAGGTTTGGATGCTATCATTCTCTCAGACCTCTCTCAAAGGATCAGATGCTCTTCTtcatccccaccctcagcctcccctcagccctcC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      24344 143 +    290775 TCCTG--ACACAGAAGCTGCCAAGAAACTGGCAGCCGAGCTTCAAGGTGGCAGTGCCAGGTTTGGATGCTAGCATTCTCTCAGACCTCCCTCAAAGGATCAGATGCTCTTCTtcatccccaccctcagcctcccctcagccctcC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2465900 145 -   3067355 TCCTGCCACACAGAAGCTGCCAAGAAACTGGCAGCCGAGCCTCAAGGTGGCAGTGCCAGGTTTGGACACTGTCATTCTCTCAGAGCTCCCTCAAAGGATCAGATGCCCTTCTTCATCCCCACCCTCAGCCTCCCCTCAACCCTCC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            62723 143 -    242197 TCCTG--ACACAGAAGCTGGTAAGAAACTTGCAGCAGAGCCTCAAGTTGGCAATTCCAGGTTTTGGTGCTTTCATTCTCTCAGACCTCCCTCAAAGGATCAGATGCCCTTCCTCATCCCCAGCCTCAGCCTCCCCTGAGCCCTCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      92799 142 +    106389 TCCTG--ACACAGAAGCTGGCAACAAACTTGCAGCAGAGCCTCAAGTTGGCAGTTCCAGGTTTGGGTGCTTT-ATTCTCTCAGACCTCCCTCAAAGGATGAGATGCCCTTcctcatccccagcctcagcctcccctgagccCTGC
i cebCap1.NW_016108310v1   C 0 C 0
s aotNan1.NW_018509740v1     105262 142 -    457564 TCCTG--ACACAGAAGCTGGCAAGAAACTTCCAGCAGAGCCTCAAGTTGGCAGTT-CAGGTTTGGGTGCTGTCATTCTCTCAGATCTCCCTCAAAGGATCAGATGCCCTTCCTCATCCCCAGCCTCAGCCTCCCCTGAGCCCTCC
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e macFas5.chrUn_KE146120      27237   0 +     27237 I
e rheMac8.chr4             29982330 38089 + 172585720 T
e nomLeu3.chr1a            74479799   0 + 122973662 C

a score=1214478.000000
s hg38.chr6_GL000254v2_alt   771470 159 +   4827813 AGGAAAGCAGCCTGTGTGGATCCCCTAAACAAGGGCAGGAGCACCAGCCCTACAGAGCAAGCAGCAGCTGGGTGAGGCAGACGGCGGCACAAGGTGGGGACCACGGTGTTCCAGGGCCACTTAGGCTCCTAGGAAATTCACCCGCCACCATCCTCAGGG
s panTro5.chr6             29743839 159 + 175400573 AGGAAAGCAGCCTGTGTGGATCCCCTAAACAAGGGCAGGAGCACCAGCCCTACAGAGCAAGCAGCAGCTGGGTGAGGCAGACGGCGGCACAAGGTGGGGACCACGGTGTTCCAGGGCCACTTAGGCTCCTATGAAATTCACCCGCCACCATCCTCAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29973570 159 + 173848474 AGGAAAGCAGCCTGTGTGGATCCCCTAAACAAGGGCAGGAGCACCAGCCCTACAGAGCAAGCAGCAGCTGGGTGAGGCAGACGGCGGCACAAGGTGGGGACCACGGTGTTCCAGGGCCACTTAGGCTCCTATGAAATTCACCCGCCACCATCCTCAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5785160 159 +   6154872 AGGAAAGCAGCCTGTGTGGGTCCGCTAAACAAGGGCATGAGCACCAGCCCTACAGAGCAAGCAGCAGCTGGGTGAGGCAGATGGCGGCACAAGATGGGGACCACGGTGTTCCAGGGCCACTTAGGCTCCTATGAAATTCACCCGCCACCATCCTCAGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29944241 159 + 172585720 aggaaagcagcCTATGTGGGTCCCCTAAACAGGGGCAGGAGCACGAGCCCTACAGAGCGAGCAGCAGCTGGGTGAGGCAGATGGAGGCACAGGGTGGGGACCACGGTGTTCCAGGGCCTCTCAGGCTGCTATGAAATTCACTCCCCACCATCCTCAGGG
i rheMac8.chr4             T 38089 I 24
s macFas5.chr4             29608171 159 - 170955103 AGGAAAGCAGCCTATGTGGGTCCCCTAAACAGGGGCAGGAGCACGAGCCCTACAGAGCGAGCAGCAGCTGGGTGAGGCAGATGGAGGCACAGGGTGGGGACCACGGTGTTCCAGGGCCACTCAGGCTGCTATGAAATTCACTCCCCACCATCCTCAGGG
i macFas5.chr4             C 0 I 10
s macNem1.NW_012011356v1    2651588 159 -   2996164 AGGAAAGCAGCCTGTGTGGGTCCCCTAAACGGGGGCAGGAGCACAAGCCCTACAGAGCGAGCAGCAGCTGGGTGAGGCAGATGGAGGCACAGGGTGGGGACCACGGTGTTCCAGGGCCACTCAGGCTGCTATGAAATTCACTCCCCACCATCCTCAGGG
i macNem1.NW_012011356v1   C 0 I 21
s cerAty1.NW_012002711v1     403357 159 +    766320 AGGAAAGCAGCCTGTGTGGGTCCCCTAAACGGGGGCAGGAGCACAAGCCCTACAGAGCGAGCAGCAGCTGGGTGAGGCAGATGGAGGCACAGGGTGGGGACCACGGTGTTCCAGGGCCACTCGGGCTGCTATGAAATTCACCCCCCACCATCCTCAGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28861129 159 -  71996105 AGGAAAGCAGCCTGTGTGGGTCCCCTAAACGGGGGCAGGAGTACGAGCCCTACAGAGCGAGCAGCAGCTGGGTGAGGCAGATGGAGGCACAGGGTGGGGACCACGGGGTTCCAGGGCCACTCAGGCTGCTATGAAATTCACCCTCCACCATCCTCAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      24487 159 +    290775 AGGAAAGCAGCCTGTGTGGGTCCCCTAAACGGGGGCAGGAGCACAAGCCCTACAGAGCGAGCAGCAGCTGGGTGAGGCAGATGGAGGCACAGGGTGGGGACCACGGGGTTCCAGGGCCACTCAGGCTGCTATGAAATTCACCCCCCACCATCCTCAGGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2466045 159 -   3067355 AGGAAAGCAGCCTGTGTGGGTCCCCTAAACAGGGGCAGGAGCACGAGCCCTACAGAGCGAGCAGCAGCTGGGTGAGGCAGATGGAGGCACAGGGTGAGGACCACGGTGTTCCAGGGCCACTCAGGCTGCTATGAAATTCGCCCCCCACCATCCTCAGGG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            62866 159 -    242197 AGGAAAGCAGGCTGTGTGGGTCTCCCAAACAGAGGCAGGAGCACCAGCCCTACAGACCCAGTAGCTGCTGGGTGAGGCAGATGGTGGCATAGGGTGAGGGCCACGGTGTTCCAGGGCTGCTTAGGCTGCTATGAAATTCATCCCCCACAATCCTCAGGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      92941 159 +    106389 AGGAAAGCAGGCTGTGTGGGTCTCCCAAACAGAGGCAGGAGCACCAGCCCTACAGAGCCAGCAGCTGCTGGGTGAGGCAGATGGTGGCACAGGGTGAGGGCCACGGTGTTCCAGGGCCACTTAGACTGCTGTGAAATTCATCCCCCACAATCCTCAGGG
i cebCap1.NW_016108310v1   C 0 C 0
s aotNan1.NW_018509740v1     105404 159 -    457564 AGGAAAGCAGCATGTGTGAGTCTCCCAAACAGAGTCAGGAGCACCAGCCCTACAGAGCCAGCAGCAGCTGGGTGAGGCAGATGGTGGCCCAGGGTGGGGGCAACGGTGTTCCAGGGCCACTTAGGCTGCTATGAAATTCATCCTCCACAATCCTCAGGG
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e nomLeu3.chr1a            74479799   0 + 122973662 C

a score=49830.000000
s hg38.chr6_GL000254v2_alt   771629 9 +   4827813 ACCTCTTCT
s panTro5.chr6             29743998 9 + 175400573 ACCTCTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29973729 9 + 173848474 ACCTCTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5785319 9 +   6154872 ACCTCTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29608340 9 - 170955103 GGCTTCTCT
i macFas5.chr4             I 10 I 2
s cerAty1.NW_012002711v1     403516 9 +    766320 ACCTCTTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28861288 9 -  71996105 ACCTCTTCT
i chlSab2.chr17            C 0 I 4
s manLeu1.NW_012099233v1      24646 9 +    290775 ACCTCTTCT
i manLeu1.NW_012099233v1   C 0 I 4
s colAng1.NW_012115566v1    2466204 9 -   3067355 ACCTCTTCT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            63025 9 -    242197 ACCTCTTCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      93100 9 +    106389 ACCTCTTCT
i cebCap1.NW_016108310v1   C 0 C 0
s aotNan1.NW_018509740v1     105563 9 -    457564 ACCTCTTCT
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e macNem1.NW_012011356v1    2651747 21 -   2996164 I
e rheMac8.chr4             29944400 24 + 172585720 I
e nomLeu3.chr1a            74479799 0 + 122973662 C

a score=207.000000
s hg38.chr6_GL000254v2_alt   771638 3 +   4827813 -TTG
s panTro5.chr6             29744007 3 + 175400573 -TTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29973738 3 + 173848474 -TTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5785328 3 +   6154872 -TTG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29608351 3 - 170955103 -CTG
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1    2651768 3 -   2996164 -CTG
i macNem1.NW_012011356v1   I 21 C 0
s cerAty1.NW_012002711v1     403525 3 +    766320 -CTG
i cerAty1.NW_012002711v1   C 0 I 4
s chlSab2.chr17            28861301 3 -  71996105 -CTG
i chlSab2.chr17            I 4 C 0
s manLeu1.NW_012099233v1      24659 3 +    290775 -CTG
i manLeu1.NW_012099233v1   I 4 C 0
s colAng1.NW_012115566v1    2466213 3 -   3067355 -CTG
i colAng1.NW_012115566v1   C 0 I 3
s saiBol1.JH378357            63034 3 -    242197 CTT-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      93109 3 +    106389 CTT-
i cebCap1.NW_016108310v1   C 0 C 0
s aotNan1.NW_018509740v1     105572 3 -    457564 CTT-
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e rheMac8.chr4             29944400 24 + 172585720 I
e nomLeu3.chr1a            74479799 0 + 122973662 C

a score=6790083.000000
s hg38.chr6_GL000254v2_alt   771641 927 +   4827813 AAAAAAAGGGACTTTCTCAGAACATTCTGACAACACGAGTTGTGAATCCCTGGGGCTGTATGGAGAAATGGCCCACGACCTTTTTCCATCTCTTCCCCCATCACTGCCCAGCTCTGAGATTGAGCCCCTGGGAAGAGGGCCCGGATCTTTGCCAGAGGCTGCTGGGCATACCTGAGCACACGTGCCATGGGCTGCTTGTGACGGGCTGGAACACCTAGCCCAGGTGTCCCAGAAGCCACCACAGAC--ATCAGCCTATTCCTCCCCTGGTGTTGGTCTTTGAAAAGTGAGTCTGGACACCGCAAAACTGGAATCCAGGTTTCCTACTTTCGAGGGGAGGTAGCACCCCATGGCGCAGCTGTGATTCT-CAGCCCTCCTCTGGGCCGTGCCCCAGCCGGGATCTGAACATCCACCCTCGGCCCCAGGTGCTGTTGCCCCCACACTGAGCCCTCGTACCCCATGCTCCCTGGCCCTCCTGCCAGGGCACCCTTTTCACAAAGTGGAGTGGAT-G-AAAAGAACAGGAAAGAGCACCAACCCTGCTGCTGTCCCCATATGACAGAGGCTGCTGTGGGGGCATCTGTTGTACTTGGGTGAGCAGGCCCCTTGGCCTCGAGCTCTACCATGCAGGGGTGC----TGCAGACAGAGCCAGGTGATAGGAAAGAGCATGTCTGGGAACCCACCTGATGACAGCCTCAGCTC------AGGATGAGGCAGGAGGCCTCTGGCTAGGCTTAGGGGAGATGGCTGGAGGAACCTCCTCAGGGTGCCAG-TGGACTGGGTAAAGCCAGCAGGGGGCTTGGAGGTCAGGGAAGCTGTGATTTA--TCAAGCACTGTGGGCATTGCAATATTTTCTCTGTTCGGTTCAGTCCAATGGGACATCAGTTCTATACATATCTTCCTCTTCCTCTAGCCCTGCTCAGTCCTGGGTGGAGAAG
s panTro5.chr6             29744010 927 + 175400573 AAAAAAAGGGACTTTCTCAGAACATTCTGACAACACGAGTTGTGAATCCCTGGTGCTGTATGGAGAAATGGCCCACCACCTTTTTCCATCTCTTCCCCCATCACTGCCCAGCTCTGAGATTGAGCCCCTGGGAAGAGGGCCCGGATCTTTGCCAGAGGCTGCTGGGCATACCTGAGCACACGTGCCATGGGCTGTTTGTGACGGGCTGGAACACCTAGCCCAGGTGTCCCGGGAGCCACCACAGAC--ATCAGCCTATTCCTCCCCTGGTGTTGGTCTTTGAAAAGTGAGTCTGGACACCGTAAAACTGGAATCCAGGTTTCCTGCTTTCGAAGGGAGGTAGCCCCCCATGGCGCAGCTGTGATTCT-CAGCCCTCCTCTGGGCCGTGCCCCAGCCGGGATCTGAACATCCACCCTCGGCCCCAGGTGCTGTTGCCCCCACACTGAGCCCTCGCACCCCATGCTCCCTGGCCCTCCTGCCAGGGCACCCTTTTCACAAAGTGGAGTGGAT-G-AAAAGAACAGGAAAGAGCACCAACCCTGCTGCTGTCCCCATATGACAGAGGCTGCTGTGGGGGCATCTGTTGTACTTGGGTGAGCAGGCCCCTTGGCCTCGAGCTCTGCCATGCAGGGGTGC----TGCAGACAGAGCCAGGTGATAGGAAAGAGCATGTCTGGGAACCCACCTGATGACAGCCTCAGCTC------AGGATGAGGCAGGAGGCCTCTGGCTAGGCTTAGGGGAGATGGCCGGAGGAACCTCCTCAGGGTGCCAG-TGGACTGGGTAAAGCCAGCAGGGGGCTTGGAGGTCAGGGAAGCTGTGATTTA--TCAAGCACTGTGGGCATTGCAATATTTTCTCTGTTCGGTTCAGTCCAATGGGACATCAGTTCTATACATATCTTCCTCTTCCTCTAGCCCTGCTCAGTCCTGGGTGGAGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29973741 926 + 173848474 AAAAAAAGGGACTTTCTCAGAACATTCTGACAACACGAGTTGTGAATCCCTGGTGCTGTATGGAGAAATGGCCCACCACCTTTTTCCATCTCTTCCCCCATCACTGCCCAGCTCTGAGATTGAGCCCCTGGGAAGAGGGCCCGGATCTTTGCCAGAGGCTGCTGGGCATACCTGAGCACACGTGCCATGGGCTGTTTGTGACGGGCTGGAACACCTAGCCCAGGTGTCCCGGGAGCCACCACAGAC--ATCAGCCTATTCCTCCCCTGATGTTGGTCTTTGAAAAGTGAGTCTGGACACCGTAAAACTGGAAT-CAGGTTTCCTGCTTTCGAAGGGAGGTAGCCCCCCATGGCGCAGCTGTGATTCT-CAGCCCTCCTCTGGGCCGTGCCCCAGCCGGGATCTGAACATCCACCCTCGGCCCCAGGTGCTGTTGCCCCCACACTGAGCCCTCGCACCCCATGCTCCCTGGCCCTCCTGCCAGGGCACCCTTTTCACAAAGTGGAGTGGAT-G-AAAAGAACAGGAAAGAGCACCAACCCTGCTGCTGTCCCCATATGACAGAGGCTGCTGTGGGGGCATCTGTTGTACTTGGGTGAGCAGGCCCCTTGGCCTCGAGCTCTGCCATGCAGGGGTGC----TGCAGACAGAGCCAGGTGATAGGAAAGAGCATGTCTGGGAACCCACCTGATGACAGCCTCAGCTC------AGGATGAGGCAGGAGGCCTCTGGCTAGGCTTAGGGGAGATGGCCGGAGGAACCTCCTCAGGGTGCCAG-TGGACTGGGTAAAGCCAGCAGGGGGCTTGGAGGTCAGGGAAGCTGTGATTTA--TCAAGCACTGTGGGCATTGCAATATTTTCTCTGTTCGGTTCAGTCCAATGGGACATCAGTTCTATACATATCTTCCTCTTCCTCTAGCCCTGCTCAGTCCTGGGTGGAGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5785331 927 +   6154872 AAAAAAAGGGACTTTCTCAGAACATTCTGACAACACGAGTTGTGAATCCCTGGTGCTGTATGGAGAAATGGCCCACCACCTTTTTCCATCTCTTCCCCCATCACTGCCCAGCTCTGAGATTGAGCCCCTGGGAAGAGGGCCCGGATCTTTGCCAGAGGCTGCTGGGCATACCTGAGCACACGTGCCATGGGCTGTTTGTGACGGGCTGGAACACCTAGCCCAGGTGTCCCGGAAGCCACCACAGAC--ATCAGCCTATTCCTCCCCTGGTATTGGTCTTTGAAAAGTGAGTCTGGACACCGTAAAACTGGAATCCAGGTTTCCTGCTTTCGAGGGGAGGTAGCCCCGCACGGCGCAGCTGTGATTCT-CAGCCCTCCTCTGGGCCATGCCCCAGCCGGGATCTGAACATCCACCCTCGGCCCCAGGTGCTGTTGCCCCCACACTGAGCCCTCGCACCCCATGCTCCCTGGCCCTCCTACCAGGGCACCCTTTTCACAAAGTGGAGTGGAT-G-AAAAGAACAAGAAAGAGCACCAACCCTGCTGCTGTCCCCATATGACAGAGGCTGCTGTGGGGGCATCTGTTGTACTTGGGTGAGCAGGCCCCTTGGCCTCGAGCTCTGCCATGCAGGGGTGC----TGCAGACAGAGCCAGGTGATAGGAAAGAGCATGTCTGGGAACCCACCTGATGACAGCCTCAGCTC------AGGATGAGGCAGGAGGCCTCTGGCTAGGCTTAGGGGAGATGGCCGGAGGAACCTCCTCAGGGTGCCAG-TGGACTGGGTAAAGCCAGCAGGGGGCTTGGAGGTCAGGGAAGCTGTGATTTA--TCAAGCACTGTGGGCATTGCAATATTTTCTCTGTTCGGTTCAGTCCAATGGGACATCAGTTCTATACATATCTTCCTCTTCCTCTAGCCCTGCTCAGTCCTGGGTGGAGAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29944424 916 + 172585720 AAAAAAAGGGACTTTCTCAGAACATGCTGACCACATGAGTTGTGAATCCCTGGTGCTGTGTGGAGAAATGGCCCACCACCTTTTCCCGTCTGT-CCCCCATCACTGCCCAGCTCCGAGATTGAGCCCCTGGGAAGAGGCCCGGGGTCTTTACCAGTGGCTGCTGGGCATACCTGAGCACATGTGCCATGGGCTGTTTGTGACAGGCTGGAACACCTAGCCCAGGTGTCCCAGAAGCCACCACAGAC--ATCAGCCTATTCCTCCCCTGGTGGTGGTCTTTGAAAAGTGAGTCTGGACACCCTAAAACTGGAATCCAGGCTTCCTGCTTTCAAGGGCAGATGGTCCCCCATGGTGCAGCTGTGACTCTCCAGCCCTCCTCTGGGCAGTGCCCCAGCTGGGATCTGAACACCCACCCTTCGCCCCAGGTGCTGTTGCCCCCACACTGAACCCTCGCACCACATG----------CTCCTGCCAGGGCACCCTTTTCACAAAGTGGAGTGGAT-G--AAAAAAAAGGAAAGAGCACCAATCCTGCTGCTGTCCCCATATGACAGAGGCTGCTGTGGGGGCATCTGTTGTACTTGGATAAGAAGGCCCTTTGGCCTTGAGCTCTGCCATGCAGGGGTGC----TGCAGACAGAGCCAGGTGATAGGAAAGAGCAAGTCAGGGAACCCACCTGATGCCAGCCTCAGCTC------AGGATGAGGCAGGAGGCCTCTTGCTAGGCTTAGGGGAGATGGTAGGAGGAACCTCCTCAGGGTGCCAG-TAGACTGGGTAAAACCAGTAAGAGGCTTGGAGGTCAGGGAAGCTGTGATTTA--TCAAGCACTGTGGGCATTGCAATATTTTCTCTACTCAGTTCAGTCCAATGGGACATCAGTTCTGTGTATATCTTCCTCTTGCTCTAGCCCTGCCCAGTCATGGATGGAGAAA
i rheMac8.chr4             I 24 C 0
s macFas5.chr4             29608354 917 - 170955103 AAAAAAAGGGACTTTCTCAGAACATGCTGACCACATGAGTTGTGAATCCCTGGTGCTGTGTGGAGAAATGGCCCACCACCTTTTCCCGTCTGT-CCCCCATCACTGCCCAGCTCCGAGATTGAGCCCCTGGGAAGAGGCCCGGGGTCTTTACCAGTGGCTGCTGGGCATACCTGAGCACATGTGCCATGGGCTGTTTGTGACAGGCTGGAACACCTAGCCCAGGTGTCCCAGAAGCCACCACAGAC--ATCAGCCTATTCCTCCCCTGGTGGTGGTCTTTGAAAAGTGAGTCTGGACACCCTAAAACTGGAATCCAGGCTTCCTGCTTTCAAGGGCAGATGGTCCCCCATGGTGCAGCTGTGACTCTCCAGCCCTCCTCTGGGCAGTGCCCCAGCTGGGATCTGAACACCCACCCTTCGCCCCAGGTGCTGTTGCCCCCACACTGAACCCTCGCACCACATG----------CTCCTGCCAGGGCACCCTTTTCACAAAGTGGAGTGGAT-G-AAAAAAAAAGGAAAGAGCACCAATCCTGCTGCTGTCCCCATATGACAGAGGCTGCTGTGGGGGCATCTGTTGTACTTGGATAAGAAGGCCCTTTGGCCTTGAGCTCTGCCATGCAGGGGTGC----TGCAGACAGAGCCAGGTGATAGGAAAGAGCAAGTCAGGGAACCCACCTGATGCCAGCCTCAGCTC------AGGATGAGGCAGGAGGCCTCTTGCTAGGCTTAGGGGAGATGGTAGGAGGAACCTCCTCAGGGTGCCAG-TAGACTGGGTAAAACCAGTAAGGGGCTTGGAGGTCAGGGAAGCTGTGATTTA--TCAAGCACTGTGGGCATTGCAATATTTTCTCTACTCAGTTCAGTCCAATGGGACATCAGTTCTGTGTATATCTTCCTCTTGCTCTAGCCCTGCCCAGTCATGGATGGAGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2651771 917 -   2996164 AAAAAAAGGGACTTTCTCAGAACATGCTGACCACATGAGTTGTGAATCCCTGGTGCTGTGTGGAGAAATGGCCCACCACCTTTCCCCGTCTGT-CCCCCATCACTGCCCAGCTCCGAGATTGAGCCCCTGGGAAGAGGCCCGGGGTCTTTACCAGTGGCTGCTGGGCATACCTGAGCACATGTGCCATGGGCTGTTTGTGACAGGCTGGAACACCTAGCCCAGGTGTCCCGGAAGCCACCACAGAC--ATCGGCCTATTCCTCCCCTGGTGGTGGTCTTTGAAAAGTGAGTCTGGACACCCTAAAACTGGAATCCAGGCTTCCTGCTTTCAAGGGCAGATGGTCCCCCATGGTGCAGCTGTGACTCTCCAGCCCTCCTCTGGGCAGTGCCCCAGCTGGGATCTGAACACCCACCCTTCGCCCCAGGTGCTGTTGCCCCCACACTGAACCCTCGCACCACATG----------CTCCTGCCAGGGCACCCTTTTCACAAAGTGGAGTGGAT-G-AAAAAAAAAGGGAAGAGCACCAATCCTGCTGCTGTCCCCATATGACAGAGGCTGCTGTGGGGGCATCTGTTGTACTTGGATAAGAAGGCCCTTTGGCCTTGAGCTCTGCCATGCAGGGGTGC----TGCAGACAGAGCCAGGTGATAGGAAAGAGCAAGTCAGGGAACCCACCTGATGCCAGCCTCAGCTC------AGGATGAGGCAGGAGGCCTCTTGCTAGGCTTAGGGGAGATGGTAGGAGGAACCTCCTCAGGGTGCCAG-TAGACTGGGTAAAACCAGTAGGGGGCTTGGAGGTCAGGGAAGCTGTGATTTA--TCAAGCACTGTGGGCATTGCAATATTTTCTCTACTCAGTTCAGTCCAATGGGACATCAGTTCTGTGTATATCTTCCTCTTGCTCTAGCCCTGCCCAGTCATGGATGGAGAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     403532 917 +    766320 AAAAAAAGGGACTTTCTCAGAACATGCTGACAACATGAGTTGTGAATCCCTGGTGCTGTGTGGAGAAATGGCCCACCACCTTTTCCCGTCTCT--CCCCATCACTGCCCAGCTCCGAGATTGAGTCCCTGGGAAGAGGGCCAGGGTCTTTGCCAGTGGCTGCTGGGCATACCTGAGCACATGTGCCATGGGCTGTTTGTGACAGGCTGGAACACCTAGCCCAGGTGTCCCGGAAGCCACCACAGAC--ATCAGCCTATTCCTCCCCTGGTGGTGGTCTTTGAAAAGTGAGTCTGGACACCCTAGAACTGGAATCCAGGCTTCCTGCTTTCAAGGGCAGATGGTCCCCCATGGTGTAGCTGTGACTCTCCAGCCCTCCTCTGGGCAGTGCCCCAGCCGGGATCTGAACACCCACCCTTCGCCCCAGGTGCTGTTGCCCCCACACTGAACCCTCGCACCACATG----------CTCCTGCCAGGGCACCCTTTTCACAAAGTGGAGTGGAT-GGAAAAAAAAAGGAAAGAGCACCAATCCTGCTGCTGTCCCCATATGACAGAGGCTGCTGTGGGGGCATCTGTTGTACTAGGATAAGAAGGCCCTTTGGCCTTGAGCTCTGCCATGCAGGGGTGC----TGCAGACAGAGCCAGGTGATAGGAAAGAGCAAATCAGGGAACCCACCTGATGCCAGCCTCAGCTC------AGGATGAGGCAGGAGGCCTTTTGCTAGGCTTAGGGGAGATGGCAGGAGGAACCTCCTCAGGGTGCCAG-TGGACTGGGTAAAGCCAGTAGGGGGCTTGGAGGTCAGGGAAGCTGTGATTTA--TCAAGCACTGTGGGCATTGCAATATTTTCTCTACTCAGTTCAGTCCAATGGGACATCAGTTCTGTGTATATCTTCCTTTTGCTCTAGCCCTGCCCAGTCATGGGTGGAGAAA
i cerAty1.NW_012002711v1   I 4 C 0
s chlSab2.chr17            28861304 917 -  71996105 AAAAAAAGAGACTTTCTCAGAACATGCTGACAACATGAGTTGTGAATCCCTGGTGCTGTGTGGAGAAATGGCCCACCACCTTTTCCCATCTGT-CCCCCATCACTGCCCAGCTCCGAGATTGAGCCCCTGGGAAGAGGGCCAGGGTCTTTGCCAGTGGCTGCTGGGCATACCTGAGCACATGTGCCATGGGCTGTTTGTGACAGGCTGGAACACCTAGCCCAGGTGTCCCGGAAGCCACCACAGAC--ATCAGCCTATTCCTCCCCTGGTGGTGGTCTTTGAAAAGTGAGTCTGGATACCCTAAAACTGGAATCCAGGCTCCCTGTTTTCAAGGGCAGATGGTCCCCCATGGTGCAGCTGTGACTCTCCAGCCCTCCTCTGGGCAGTGCCCCAGCCAGGATCTGAACACCCACCCTTCGCCCCAGGTGCTGTTGCCCCCACACTGAACCCTCGCACCATATG----------CTCCTGCCAGGGCACCCTTTTCACAAAGTGGAGTGGAT-G-AAAAAAAAAGGAAAGAGCACCAATCCTGCTGCTGTCCCCATATGACAGAGGCTGCCATGGGGGCATCTGTTGTACTTGGATAAGAAGGCCCTTTGGCCTTGAGCTCTGCCATGTAGGGGTGC----TTCAGACAGAGCCAGGTGATAGGAAACAGCAAGTCAGGGAACCCACCTGATGCCAGCCTCAGCTC------AGGATGAGGCAGGAGGCCTCTTGCTAGGCTTAGGGGAGATGGCAGGAGGAACCTCCTCAGGGTGCCAG-TGGACTGGGTAAAGCCAGTAGGGGGCTTGGAGGTCAGGGAAGCTGTGATTTA--TCAAGCACTGTGGGTATTGCAATATTTTCTCTACTCAGTTCAGTCCAATGGGACATCAGTTCTGTGTATATCTTCCTCTTCCTCTAGCCCTGCCCAGTCATGGGTGGAGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      24662 917 +    290775 AAAAAAAGGGACTTTCTCAGAACATGCTGACAACATTAGTTGTGAATCCCTGGTGCTGTGTGGAGAAATGGCCCACCACCTTTTCCCGTCTCT--CCCCATCACTGCCCAGCTCCGAGATTGAGTCCCTGGGAAGAGGGCCAGGGTCTTTGCCAGTGGCTGCTGGGCATACCTGAGCACATGTGCCACGGGCTGTTTGTGACAGGCTGGAACACCTAGCCCAGGTGTCCCGGAAGCCACCACAGAC--ATCAGCCTATTCCTCCCCTGGTGGTGGTCTTTGAAAAGTGAGTCTGGACACCCTAAAACTGGAATCCAGGCTTCCTGCTTTCAAGGGCAGATGGTCCCCCATGGTGCAGCTGTGACTCTCCAGCCCTCCTCTGGGCAGTGCCCCAGCCGGGATCTGAACACCCACCCTTCGCCCCAGGTGCTGTTGCCCCCACACTGAACCCTCGCACCACATG----------CTCCTGCCAGGGCACCCTTTTCACAAAGTGGAGTGGATGG-AAAAAAAAAGGAAAGAGCACCAATCCTGCTGCTGTCCCCATATGACAGAGGCTGCTGTGGGGGCATCTGTTGTACTTGGATAAGAAGGCCCTTTGGCCTTGAGCTCTGCCATGCAGGGGTGC----TGCAGACAGAGCCAGGTGATAGGAAAGAGCAAATCAGGGAACCCACCTGATGCCAGCCTCAGCTC------AGGATGAGGCAGGAGGCCTTTTGCTAGGCTTAGGGGAGATGGCAGGAGGAACCTCCTCAGGGTGCCAG-TGGACTGGGTAAAGCCAGTAGGGGGCTTGGAGGTCAGGGAAGCTGTGATTTA--TCAAGCACTGTGGGCATTGCAATATTTTCTCTACTCAGTTCAGTCCAATGGGACATCAGTTCTGTGTATATCTTCCTCTTGCTCTAGCCCTGCCCAGTCATGGATGGAGAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2466219 929 -   3067355 AAAAAAAGGGACTTTCTCAGAACATGCTGACCACATGAGTTGTGAATCCCTGGTGCTGTGTGGAGAAATGGCCCACCACCTTTTCCCGTCTCT-ACCCCATCACTGCCCAGCTCCGAGACTGAGCCCCTGGGAAGAGGGCCAGGGTCTTTGCCAGTGGCTGCTGGGCATACCTGAGCACATGTGCCATGGGCTGTTTGTGACAGGCTGGAACACCTAGCCCAGGTGTCCCGGAAGCCACCACAGACATATCAGCCTATTCCTCTCCTGGTGTTGGTCTTTGAAAAGTGAGTCGGGACACCCTAAAACTGGAATCCAGGCTTCCTGCTTTCAAGGGCAGATGGTCCCCCATGACGCAGCTGTGATTCTCCAGCCCTTCTCTGGACAGTGCCCCAGCCGGGATCTGAACATCCACCCTTCGCCCCAGGTGCTATTGCCCCCACACTGAGCCCTCGCACCACATGCTCCCTGGCCCTCCCGCCAGGGCACCCTTCTCACAAAGTGGAGTGAAT-G-AAAAAAAAAGGAAAGGGCACCAATCCTGCTGCTGTCCCCATATGACAGAGGCTGCTGTGGGGGCATCTGTTGTACTTGGATAAGAAGGCCCTTTGGCTTTGAGCTCTGCCATGCAGGGGTGC----TGCAGACAGAGCCAGGTGATAGGAAAGAGCATGTCAGGGAACCCACCTCATGCCAGCCTCAGCTC------AGGATGAGGCAGGAGGCCTCTTGCTAGGCTTAGGGGAGATGGCAGAAGGAACCTCCTCAGGGTGCCAG-TGGACTGGGTAAAGCCAGTAGGGGGCTTGGAGGTCAGGGAAGCTGTGATTTA--TCAAGAACTGTGGGCATTGCAATGTTTTCTCTACTCAGTTCAGTCCAATGGGACATCAGTTCTGTGTATATCTTCCTCTTCCTCTAGCCCTGTCCAGTCATGGGTGGAGAAA
i colAng1.NW_012115566v1   I 3 C 0
s saiBol1.JH378357            63037 926 -    242197 ACTGAAAGGGACATTCTTAGAACATGCTGACC---TGAGTTGCAAATCCCTGGTGCTGTGTGGAGAAATGTCTCACCACCTTCTCCTATCTCT-CCCCCATCACTGCCAAGCCCCGAGATTGAGCCACTGAAAAGACGTCCAGGGTCTTTGCCTGTGGCTGCTGGGCATACCTGAGCACATGTGCCGTGGGCTGCTTGTGATAGGCTGGAATACCTAACCCAGGTGTCCCAGAAGCCACCACAGAC--ATCA-CCTG-TCCTCCCTTGGTGGTGGTCTTTGAAAAGTGAGTCTAGACACCCTAAAACTGGAATCCAGGCTTCCTGCTTTCAAGGGCAGGTGGTCCCCCATGGTGCAGCTGTGATTCT-CAGCCCTCCTCTGGGCTGTGCCTCAGCTGGGATATGAACATTCACCCTTGG-CCTGGATGCTACTGCACCCACACTGAACCATCACACCCCACGCTCCCTGGCCGTCCTTCTAGGACACCCTTCTCATGAAGTCGAGAGGAT-G-AAAAGAACAGGAAAGCATGTCAATCCTCCTGCTGTCCCCATATGGCAGAGGCTGTTGTGGGGATGTCTGTTGTACTTGGGTGAGAAAGCCCCTTGGCCTCAAGCGCTGCCATGCAAGAATGC----TACAGACAGAGCCAGGTGATAGGAAAGAGCATGTCCAGGAACTCACCTGATGCCAGCCTCAGCTCAGACTGAGGATGAGGCAGGAGGCCTCTTGCTAGGCTTAGGGGATATGGCAGGAGGAGCCTCCTCAGGATGCCAACTGGGCTGGGTAAAGCCAATAGAGGGTTTGGGGACCAGGGAAGCTGTGATTTA--TCAAGCACTGTGGACATTGCAATATTTTCACTGCTCTGTTGAGTCCAGTGGGACATCAGTCCTGTGCAT-CAGCCCTCTTCCTCTAGCCCTGCCCAGTCCTGGGTGGAGAAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      93112 930 +    106389 ACTGAAAGGGACATTCTCAGAACATGCTGACC---TGAGTTGCAAATCCCTGGTGCTGTGTGGAGAAATGTCCCACCACCTTTTCCTATCTCTCCCCCCATCACTGCCCAGCCCCGAGATTGAGCTGCTGAAAAGAAGTCCAGGGTCTCTGCCTGTGGCTGCTGAGCATACCTGAGCACATGTGCCGTAGGCTGCTTGTGACAGGCTGGAATACATAATCCAGGTGTCCCGGAAGCCACCACAGAC--ATCA-CCTG-TCCTCCCTTGGTAGTGGTCTTTGAAAAGTGAGTCTAGACACCCTAAAACTGGGATTCAGGCTTCCTGCTTTCAAGGGCAGGTGGTCCCCCATGGTGCAGCTGTGAGTCT-CATCCCTCCTCTGGGCTGTGCCTCAGCTGGGATATGAACATTCATCCTTGG-CCTGGGTGTTACTGCCCCTACACTGAGCCATCACACCCCACACTCCCTGGCCTTCCTTCTAGGGCACCCTTCTCATGAAGTGGAGTGGAT-G-AAAAGAACAGGAAAGCATGTCAATCCTCCTGCTGTCACCATATGGCAGAGGCTGTTGTGAGGATGTCTGTTGTACTTGGGTGAGAAAGCCCCTTGGCCTCAAGCCCTGCCATGCAGGAATGC----TACAGACAGCGCCAGGTGATAGGAAAGAGCATGTCCAGGAACTCACCTGATGCCAGTCTCAGCTCAGACTGAGGATGAGGCAGGAGGCCTCTTGCTAGGCTTAGGGGATATGGCAGGAGGAGCCTCCTCAGGATGCCAACTGGGCTGGGTAAAGCCAATAGAGGGTTTGGGGACCAGGGAAGCTGTGATTTATTTCAAGCACTGTGGACATTGCAATATTTTCACTGCTCTGTTGAGTCCAATGGGACATCAGTCCTGTGCATATCTTCCTCTTCCTCTAGCCCTGCCCAGTCCTGGGTGGAAAAA
i cebCap1.NW_016108310v1   C 0 C 0
s aotNan1.NW_018509740v1     105575 930 -    457564 ACTGAAAGGGACATTCTCAGAACATGCTGACG---TGAGTCGTGAATCCCTGGTGCTGTGTGGAGAAATGTCCCACCACCTTTTCCTATCTCTCTCCTCATCACTGCCCAGCCCTGAGATTTAGCCGCTGAAAAGAAGTCCAGGGTCTTTACCTGTGGCTGCTGGGCATGCCTGAGCACATGTGCCATGGGCTGCTTGTGATGGGCTGGAATACCTAATCCAGGTGTCCCAGAAGCCACCACAGAC--ATCA-CCTA-TCTTCCC-TGGTGGTGGTCTTTGAAAAGTGAGTCTAGACACCCTAAAATTGGAATCCAGGCTTCCTGCTTTCAAGGGCAGGTGGT-CCCCATGGTGCAGCTGTGATTCT-CAGCCCTCTTCTGGGCTGTGCCCCAGCTGGGATATGAATATTCACCCTTGG-CCTTGGTGCTTCTGCCCCCACACTGAGCCATCGCACCCCATGCTCCTTGGCCCTCCTTCCAGGGCACCCTTCTCATGAAGTGGAGTGGAT-G-AAAAAAACAGGAAAGCATGTCAATCCTCCTACTATCCCCATATGGCAGAGGCTGTTGTGGGGATGTCTGTTGTACTTGGGTGAGAAGGCCCCTTGGCCTCAAGCCCTGCCATGCAGGAATGCTACATACAGACAGAGCCAAGTGATAGGAAAGAGCATGTCCAGGAACCCACCTGATGCCAGCCTCAGCTCAGGCTGAGGATAAGGCAGAAGGCCTCTTGCTAGGCTTTGGGAAGACGGCAGAAGGAGCCTCCTCAGGGTGCCAACTGGGCTGGGTAAAGCCAGTGGAGGGTTTGGGGACCAGGGAAGCTGTGATTTA--TCAAGCACTGTGGACATTGCAATATTTTCACTGCTCTGTCGAGTCCAATGGGACATCAGTCCTGTGCATATCTTCCTCTTCCTCTAGCCCTGCCCAGTCCTGGGTGGAGAAA
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e nomLeu3.chr1a            74479799   0 + 122973662 C

a score=8666.000000
s hg38.chr6_GL000254v2_alt   772568 1 +   4827813 C
s panTro5.chr6             29744937 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29974667 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5786258 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74479799 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29945340 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29609271 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2652688 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     404449 1 +    766320 C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28862221 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      25579 1 +    290775 C
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2467148 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            63963 1 -    242197 C
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      94042 1 +    106389 T
i cebCap1.NW_016108310v1   C 0 C 0
s aotNan1.NW_018509740v1     106505 1 -    457564 C
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I

a score=707716.000000
s hg38.chr6_GL000254v2_alt   772569 103 +   4827813 TACCAGAACCACATCTCCTGTCTGTCCCACCATAAGTCTCTGCTTCAT---------------TCACGCTTTCATGTGTCGTGC-----------ATCAAGCAAGCATTTGCCTGTAGGCTTGGGGAGC
s panTro5.chr6             29744938 103 + 175400573 TACCAGAACCACATCTCCTGTCTGTCCCACCATAAGTCTCTGCTTCAT---------------TCATGCTTTCATGTGTCGTGC-----------ATCAAGCAAGCATTTGCCTGTAGGCTTGGGGAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29974668 103 + 173848474 TACCAGAACCACATCTCCTGTCTGTCCCACCATAAGTCTCTGCTTCAT---------------TCATGCTTTCATGTGTCGTGC-----------ATCAAGCAAGCATTTGCCTGTAGGCTTGGGGAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5786259 103 +   6154872 TACCAGAACCACATCTCCTGTCTGTCCCACCATAAGTCTCTGCTTCAT---------------TCACGCTTTCATGTGTCGTGC-----------ATCAAGCAAGCACTTGCCTGTAGGCTTGGGGAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74479800 118 + 122973662 TACTAGAACCATATCCCCTGTCTGTCCCACCGTAAGTCTCTGCTTcattcatgcattcatgtatcatgcattcatgtatcatgc-----------attcaGCAAGCATTTGCCTGTAGGCTTGGGGAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29945341 113 + 172585720 TACTAGAACCACATCCCCTGTGTGTCCCACCATAAGTCTCTGCTTcat---------------tcatgcattcatgcatcatgcCAAATGCTTTGCTTCAGCAAGCATTT-CCTGTAGGCTTGGGGTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29609272 113 - 170955103 TACTAGAACCACATCCCCTGTGTGTCCCACCATAAGTCTCTGCttcat---------------tcatgcattcatgcatcatGCCAAATGCTTTGCTTCAGCAAGCATTT-CCTGTAGGCTTGGGGTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2652689 113 -   2996164 TACTAGAACCACATCCCCTGTGTGTCCCACCATAAGTCTCTGCTTCAT---------------TCACGCATTCATGCATCATGCCAAATGCTTTGCTTCAGCAAGCATTT-CCTGTAGGCTTGGGGTGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     404450 113 +    766320 TACTAGAACCACATCCCCTGTCTGTCCCACCATAAGTCTCTGCTTCAT---------------TCACGCATTCATGCATCATGCCAAAAGCTTTGCTTCAGCAAGCATTT-CCTGTAGGCTTGGGGTGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28862222 113 -  71996105 TACTAGAACCACATCCTCTGTCTGTCCCACCATAAGTCTCTGCttcat---------------tcatgcattcatgcatcatGCCAAATGCTTTGCTTCAGCAAGCATTT-CCTGTAGGCTTGGGGTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      25580 113 +    290775 TACTAGAACCACATCCCCTGTCTGTCCCACCATAAGTCTCTGCTTCAT---------------TCACGCATTCATGCATCATGCCAAAAGCTTTGCTTCAGCAAGCATTT-CCTGTAGGCTTGGGGTGG
i manLeu1.NW_012099233v1   C 0 I 7688
s colAng1.NW_012115566v1    2467149 113 -   3067355 TACTAGAACCACATCCCCTGTCTGTCCCACCATAAGTCTCTGCTTCAT---------------TCACGTATTCATGCATCATGCCAAATGCTTTGCTTCAGCAAGCATTT-CCTGTAGGCTTGGGGTGC
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108310v1      94043 101 +    106389 TACTAGCACCACATCCCCTGTCTGTCCCACCAAGAG--TCTGCTTTAT---------------TCACATATTCATGCATCATGC-----------ATTCAGCAAGCATTTTCCTGTAGGCATGGGGAGC
i cebCap1.NW_016108310v1   C 0 C 0
s aotNan1.NW_018509740v1     106506 103 -    457564 TACTAGCACCACATCCCCTGCCTGTCCCACCAAGAGTCTCTGCTTTAT---------------TCAAAcattcatgcatcatgc-----------attcagcaagcatTTGTCTGTAGGCTTGGGGAGC
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964   0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I

a score=4854947.000000
s hg38.chr6_GL000254v2_alt   772672 642 +   4827813 TCTGAGAGGGGTTGAGAGTGAAC--------AAAATTAATCAAATCGTATAACAGAAGAGGAAGTCCCATCCTGCCGAGGATCCTGGATGTGAGAACCTGCTGCTGGCCTGGTGGGATCGTGGTGCCCCAGGAGCATGAACTGCTCAGGAGCAGACCCTGACCAGATCCCCTGCAGGCCTGGAACAGCCTGATCAGCAGCCTCCTAAGCCCCATGGCTGCCACAGTGGGCCTCATTGTCCTTCCCTATCACCTAGCCGGGGTGTTCCCAGCTGCCAGACAGTGCCAACTGGTGGTGCCTGCCC-ATCAGTGCCCCAAGACAGCCACTACTTTTCGAAGAATGAGACCACCAGCTGCTTTGTGGCCAGCTCCAGCTTACTGGTGAGTATTTTTAGGTAGAATCTTCCAGACTAGTGAAGTC-TTTGAGATTTTCTGCTTCTTGTTCACTGCTTCCTTCTGATGTGGACCATGCGGAAAGAGGCAGAACACAGGAACCCACACATGGG-----AGAATAGCAGGCA-TTTGACTGGACTGTGCCAAAAGAGTTGTTCAAGT---ACAATATCAAGCAAGACTGTAGTTGCAAAAAGACATAACCAACAACTTGGTTTCAATTTGAGCACCTTAATAAACAAACTGATTTAACTGTCATAGTCT
s panTro5.chr6             29745041 642 + 175400573 TCTGAGAGGGGTTGAGAGTGAAC--------AAAATTAATCAAATCGTATAACAGAAGAGGAAGTCCCATCCTGCCGAGGGTCCTGGATGTGAGAACCTGCTGCTGGCCTGGTGGGATCGTGGTGCCCCAGGAGCATGAACTGCTCAGGAGCAGACCCTGACCAGATCCCCTGCAGGCCTGGAACAGCCTGATCAGCAGCCTCCTAAGCCCCATGGCTGCCACAGTGGGCCTCATTGTCCTTCCCTATCACCTAGCCGGGGTGTTCCCAGCTGCCAGACAGTGCCAACTGGTGGTGCCTGCCC-ATCAGTGCCCCAAGACAGCCACTACTTTTCGAAGAATGAGACCACCAGCTGCTTTGTGGCCAGCTCCAGCTTACTGGTGAGTATTTTTAGGTAGAATGTTCCAGACTAGTGAAGTC-TTTGAGATTTTCTGCTTCTTGTTCACTGCTTCCTTCTGATGTGGACCATGCGGAAAGAGGCAGAACACAGGAACCCACACATGGG-----AGAATAGCAGGCA-TTTGACTGGACTGTGCCAAAAGAGTTGTTCAAGT---ACAATATCAAGCAAGACTGTAGTTGCAAAAAGACATAACCAACAACTTGGTTTCAATTTGAGCACCTTAATAAACAAACTGATTTAACTGTCATAGTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29974771 642 + 173848474 TCTGAGAGGGGTTGAGAGTGAAC--------AAAATTAATCAAATCGTATAACAGAAGAGGAAGTCCCATCCTGCCGAGGGTCCTGGATGTGAGAACCTGCTGCTGGCCTGGTGGGATCGTGGGGCCCCAGGAGCATGAACTGCTCAGGAGCAGACCCTGACCAGATCCCCTGCAGGCCTGGAACAGCCTGATCAGCAGCCTCCTAAGCCCCGTGGCTGCCACAGTGGGCCTCATTGTCCTTCCCTATCACCTAGCCGGGGTGTTCCCAGCTGCCAGTCAGTGCCAACTGGTGGTGCCTGCCC-ATCAGTGCCCCAAGACAGCCACTACTTTTCGAAGAATGAGACCACCAGCTGCTTTGTGGCCAGCTCCAGCTTACTGGTGAGTATTTTTAGGTAGAATGTTCCAGACTAGTGAAGTC-TTTGAGATTTTCTGCTTCTTGTTCACTGCTTCCTTCTGATGTGGACCATGTGGAAAGAGGCAGAACACAGGAACCCACACATGGG-----AGAATAGCAGGCA-TTTGACTGGACTGTGCCAAAAGAGTTGTTCAAGT---ACAATATCAAGCAAGACTGTAGTTGCAAAAAGACATAACCAACAACTTGGTTTCAATTTGAGCACCTTAATAAACAAACTGATTTAACTGTCATAGTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5786362 642 +   6154872 TCTGAGAGGGGTTGAGAGTGAAC--------AAAATTAATCAAATCGTATAACAGAAGAGAAAGTCCCATCCTGCCGAGGGTCCTGGATGTGAGAACCTGCTGCTGGCCTGGTGGGATCGTGGTGCCCCAGGAGCATGAACTGCTCAGGAGCAGACCCTGACCAGATCCGCTGCAGGCCTGGAACAGCCTGATCAGCAGCATCCTAAGCCCCGTGGCTGCCACAGTGGGCCTCATTGTCCTTCCCTATCACCTAGCCGGGGTGTTCCCAGCTGCCAGACAGTGCCAACTGGTGGTGCCTGCCC-ATCAGTGCCCCAAGACAGCCACTACTTTTCGAAGAATGAGACCACCAGCTGCTTTGTGGCCAGCTCCAGCTTACTGGTGAGTATTTTTAGGTAGAATGTTCCAGACTAGTGAAGTC-TTTGAGATTTTCTGCTTCTTGTTCACTGCTTCCTTCTGATGTGGACCATGCGGAAAGAGGCAGAACACAGGAACCCACACATGGG-----AGAATAGCAGGCA-TTTGACTGGACTGTGCCAAAAGAGTTGTTCAAGT---ACAATATCAAGCAAGACTGTAGTTGCAAAAAGACATAACCAACAACTTGGTTTCAATTTGAGTACCTTAATAAACAAACTGATTTAACTGTCATAGTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74479918 642 + 122973662 TCTGAGAGGGGTTGAAAGTGAAC--------AAAATTAATCAAATCGTATGACAGAAGAGGAAGTCCCATCCCACCGAGGGTCCTGGATGTGAGAACCTGCTGCCGGCCTGGTGGGATCGTGGTGCCCCAGGAGCATGAACTGCTCAGGAGAAGACCCTGACCAGGTGCCCCGCAGGACTGGAACCACCTGATCAGCAGCCTCGTAAGTCCTGTGGCCACCACAGTGGGCCTCATCTCCCTTCCCTATCACCTGGCCAGGGTGTTCCCGGCTGCCAGACAGTGCCAACTGGTGGTGCCTCCCC-ATCAGTGCGCCAAGACAGCCACTGCTTTTTGAAGAATGAGACCACCAGCTGCTTTGTGGCCAGCTCCAGCTTACTGGTGAGTATTTTTAGGTAGAATGTTCCAGACTGGTGAAGTC-TTTGAGATTTTCTGCTTCTTGTTCACTGCTTCTTTCCGGTGTGGACCATGGGGAAAGAGGGAGAACACAGGAACCCACACATGGG-----AGAATAGCAGGCA-TTTGGCTGGACTGTGCCAAAAGAGTTGTTCAAGT---ACAATATCAAGCAAGACTGTAGTTGCAAAAAGACATAACCAACAACTTGGTTTCAATTTGAGCACCTTAATAAACAAACTGATTTAACTGTCATAGTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29945454 642 + 172585720 TCTGAGAAGGGTTGACAGTGAAC--------AAAATGAATCAAATCATATGACAGAAGTGGAAGTCCCATCCTGCCAAGGGTCCTGGATGTGTGAACCTGCTGCCAGCCTGGTGGAATCGTGGTGCCCCAGGAGCATGAACTGCTCAGGAGTAGACCCTGACCAGATCCCCTACAGGCCTGGAACAGCCTGATCAGCAGCCTCCAAAGCCTTGTGGCCGCCACCGTGGGCCTCATCGTCCTTCCCTATCACCTGGCC-GGGTGTTCCTGGCTGCCAGACAGTGCCACCTGGTGGTGCCTCCCCTATCAGTGCCTCAAGACAGCCACTGCTTTTTGAAGAATGAGACCACCAGCTGCTTCGTGGCCAGCTCTAGCTTACTGGTGAGTATTTTTAGGTAGAATGTTCCAGAATAGTGAAGTC-TTTGAGATTttcttcttcttgttctctgcttccttctGGTGTGGACCATGGGGAAAGGGGCAGACCACAGGAACCCACACATGGG-----AGAATAGCAGGCA-TTTGACTGAACTGTGCCAAAAGAGTTGTTCAAGT---ACAATATCAATCAAGACTGTAGTTGCAAAAAGACATAACCAACAATTTGGTTTCAGTTTGAGCACCTTAGTAAACAAACTGACTTAACTGTCATAGTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29609385 643 - 170955103 TCTGAGAAGGGTTGACAGTGAAC--------AAAATGAATCAAACCGTATGACAGAAGTGGAAGTCCCATCCTGCCAAGGGTCCTGGATGTGTGAACCTGCTGCCAGCCTGGTGGAATCGTGGTGCCCCAGGAGCATGAACTGCTCAGGAGTAGACCCTGACCAGATCCCCTACAGGCCTGGAACAGCCTGATCAGCAGCCTCCAAAGCCTTGTGGCCGCCACCGTGGGCCTCATCGTCCTTCCCTATCACCTGGCCGGGGTGTTCCTGGCTGCCAGACAGTGCCACCTGGTGGTGCCTCCCCTATCAGTGCCTCAAGACAGCCACTGCTTTTTGAAGAATGAGACCACCAGCTGCTTCGTGGCCAGCTCTAGCTTACTGGTGAGTATTTTTAGGTAGAATGTTCCAGAATAGTGAAGTC-TTTGAGATTttcttcttcttgttctctgcttccttctGGTGTGGACCATGGGGAAAGGGGCAGACCACAGGAACCCACACATGGG-----AGAATAGCAGGCA-TTTGACTGAACTGTGCCAAAAGAGTTGTTCAAGT---ACAATATCAATCAAGACTGTAGTTGCAAAAAGACATAACCAACAATTTGGTTTCAGTTTGAGCACCTTAGTAAACAAACTGACTTAACTGTCATAGTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2652802 643 -   2996164 TCTGAGAAGGGTTGACAGTGAAC--------AAAATGAATCAAATCGTATGACAGAAGTGGAAGTCCCATCCTGCCAAGGGTCCTGGATGTGTGAACCTGCTGCCAGCCTGGTGGAATCGTGGTGCCCCAGGAGCATGAACTGCTCAGGAGTAGACCCTGACCAGATCCCCTACAGGCCTGGAACAGCCTGATCAGCAGCCTCCAAAGCCTTGTGGCCGCCACCGTGGGCCTCATCGTCCTTCCCTATCACCTGGCCGGGGTGTTCCTGGCTGCCAGACAGTGCCACCTGGTGGTGCCTCCCCTATCAGTGCCTCAAGACAGCCACTGCTTTTTGAAGAATGAGACCACCAGCTGCTTCATGGCCAGCTCTAGCTTACTGGTGAGTATTTTTAGGTAGAATATTCCAGAATAGTGAAGTC-TTTGAGATTttcttcttcttgttctctgcttccttctGGTGTGGACCATGGGGAAAGGGGCAGACCACAGGAACCCACACATGGG-----AGAATAGCAGGCA-TTTGACTGGACTGTGCCAAAAGAGTTGTTCAAGT---ACAATATCAATCAAGACTGTAGTTGCAAAAAGACATAACCAACAATTTGGTTTCAGTTTGAGCACCTTAGTAAACAAACTGACTTAACTGTCATAGTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     404563 642 +    766320 TCTGAGAGGGGTTGACAGTGAAC--------AAAATGAATCAAATCGTATGACAGAAGTGGAAGTCCCATCCTGCCAAGGGTCCTGGATGTGTGAACCTGCTGCCAGCCTGGTGGAACCGTGGTGCCCCAGGAGCATGAACTGCTCAGGAGTAGACCCTGACCAGATCCCCTACAGGCCT-GAACAGCCTGATCAGCAGCCTCCGAAGCCTTGTGGCCGCCACAGTGGGCCTCATCGTCCTTTCCTATCACCTGGCCGGGGTGTTCCTGGCTGCCAGACAGTGCCACCTGGTGGTGCCTCCCCTATCAGTGCCTCAAGACAGCCACTGCTTTTTGAAGAATGAGACCACCAGCTGCTTCGTGGCCAGCTCCAGCTTACTGGTGAGTATTTTTAGGTAGAATGTTCCAGACTAGTGAAGTC-TTTGAGATTTTCTGCTTCTTGTTCTCTGCTTCCTTCTGGTGTGGACCATGGGGAAAGGGGCAGAAGACAGGAACCCACACATGGG-----AGAATAGCAGGCA-TTTGACTGGACTGTGCCAAAAGAGTTGTTCAAGT---ACAATATCAATCAAGACTGTGGTTGCAAAAAGACATAACCAACAATTTGGTTTCAGTTTGAGCACCTCAGTAAACAAACTGATTTAACTGTGATAGTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28862335 643 -  71996105 TCTGAGAAGGGCTGACAGTGAAC--------AAAATGAATCAACTCGTATGACAGAAGTGGAAGTCCCATCCTGCCAAGGGTCCTGGATGTGTGAACCTGCTGCCAGCCTGGTGGAATCGTGGTGCCCCAGGAGCATGAACTGCTCAGGAGTAGACCCTGACCAGATCCCCTACAGGCCTGGAACAGCCTGATCAGCAGCCTCCGAAGCCTTGTGGCCGCCACAGTGGGCCTCATCGTCCTTCCCTATCACGTGGCTGGGGTGTTCCTGGCTGCCAGACAGTGCCACCTGGTGGTGCCTCCCCTATCAGTGCCCCAAGACAGTCACTGCTTTTTGAAGAATGAGACCACCAGCTGCTTTGTGGCCAGCTCTAGCTTACTGGTGAGTATTTTTAGGTAGAATGTTCCAGACTAGTGAAGTC-TTTGAGATTTTCTGCTTCTTGTTCTCTGCTTCCTTCTGGTGTGGACCATGGGGAAAGGGGCAGAAGACAGGAACCTACACATGGG-----AGAATAGCAGGCA-TTTGACTGGACTGTGCCAAAAGAGTTGTTCAAGT---ACAATATCAATCAAGACTGTAGTTGCAAAAAGACATAACCAACAATTTGGTTTCAGTTTGTGCACCTTAGTAAACAAACTGATTTAACTGTGATAGTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      33381 642 +    290775 TCTGAGAGGGGTTGACAGTGAAC--------AAAATGAATCAAATCGTATGACAGAAGTGGAAGTCCCATCCTGCCAAGGGTCCTGGATGTGTGAACCTGCTGCCAGCCTGGTGGAACCGTGGTGCCCCAGGAGCATGAACTGCTCAGGAGTAGACCCTGACCAGATCCCCTACAGGCCT-GAACAGCCTGATCAGCAGCCTCCGAAGCCTTGTGGCCGCCACAGTGGGCCTCATCGTCCTTCCCTATCACCTGGCCGGGGTGTTCCTGGCTGCCAGACAGTGCCACCTGGTGGTGCCTCCCCTATCAGTGCCCCAAGACAGCCACTGCTTTTTGAAGAATGAGACCACCAGCTGCTTTGTGGCCAGCTCCAGCTTACTGGTGAGTATTTTTAGGCAGAATGTTCCAGACTAGTGAAGTC-TTTGAGATTTTCTGCTTCTTGTTCTCTGCTTCCTTCTGGTGTGGACCATGGGGAAAGGGGCAGAACACAGGAATCCACACATGAG-----AGAATAGCAGGCA-TTTGGCTGGACTGTGCCAAAAGAGTTGTTCAAGT---ACAATATCAGTCAAGACTGTAGTTGCAAAAAGACATAACCAACAATTTGGTTTCAGTTTGAGCACCTTAGTAAACAAACTGATTTAACTGTGATAGTCT
i manLeu1.NW_012099233v1   I 7688 C 0
s colAng1.NW_012115566v1    2467262 648 -   3067355 TCTGAGAGGGGTTGACAGTGAAC--------AAAATGAATCAAATCGTATGACAGAAGTGGAAGTCCCATCCTGCCAAGGGTCCTGGATGTGTGAACCTGCTGCCAGCCTGGTGGAATCATGGTGCCCCAGGAGCATGAACTGCTCAGGAGTAGACCCTGACCAGATCCCCTACAGGCCTGGAACAGCCTGATCAGCAGCCTCCGAAGCCTTGTGGCCGCCACAGTGGGCCTCATCGTCCTTCCCTATCACCTGGCCGGGGTGTTCCTGGCTGCCAGACGGTGCCAACTGGTGGTGCCTCCCCTATCAGTGCCCCAAGACAGCCACTACTTTTTGGAGAATGAGAACACCAGCTGCTTCGTGGCCAGCTCCAGCTTACTGGTGAATATTTTTAGGTAGAATGTTCCAGAATAGTGAAGTC-TTTGAGATTTTCTGCTTCTTGTTCTCTGCTTCCTTCTGGTGTGGACCATGGGGAAAGGTGCAGAACACAAGAACCTACACAGGAACCCACAGAATAGCAGGCA-TTTGGCTGGACTGTGCCAAAAGAGTTGTTCAAGT---ACAATATCAATCAAGACTGTAGTTGCAAAAAGACATAACCAACAACTTGGTTTCAGTTTGAGCACCTTAATAAACAAACTGATTTAACTGTCATAGTCT
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108310v1      94144 645 +    106389 ACTGAGAAGGGTTGAAAGTGAGCAAAAAAAAAAAAAAAATCAAATCATATGACAGAAGGGGAAGTTCCATCTCGCCAAGGAT-CTGGATGTGGGGACCTGCT-CCAGCCTGGTGGAATCATGGTGCCCCAGGGGCATGAACTGCTCAGGAGCAGACCCTGACCAGATCCCCCGCAGGCCTGGAACAGCCTGATCAGCAGCCTCCT-AGTCTTGTGGCTGCCACAGTGGGCCTCATCATCCTTCCCTGTCACTGGGCCAGGGTGTTCCTGGCTGTCAGGCAGTGCCAACTGGTGATGCCTCCTCCATCAGTGTCCCA----AGCCA---CTTTTTGGAGAATGAGACCACCAGCTGCTTTGTGGCCAGCTCCAACTTACTGGTGAGTATTTTTAGGTAGAATGTTCCAGCCTGGTAAAGTCTTTTGAGGTTTTCTGCTTCTTGTTAGTTGCTTCCTTCTGGTATGGACAGTGGGGAAAGGAGCAGAACACAGGAACCCACACATGGG-----AGAATAGCAGGTA-TTTGGCTTGAGTATGCCAAAAGAGTTATTCAAGCAGAATAATATCAAACAAGGCTGTGGTTGCAAAAGGACATGACCAACAACTTGGTTTCAATTTGAGCACCCTAATAAACAAACTGATTTAACTGTCATAGTCT
i cebCap1.NW_016108310v1   C 0 I 1246
s aotNan1.NW_018509740v1     106609 642 -    457564 TCTGGAAAGGGTTGAAAGTGAGC--------AAACAAAATCAAATCATATGACAGAAGGGGAAGTCCCATCATGCCAAGGAT-CTGGATGTGGGAACCTGCT-CCAGCCTGGTGGAATCATGGTGCCCCAGGGGCATAAACTGCTCAGGAGCAGACCCTGACCAGATCCCCCGCAGGCCTGGAACAGCCTGATCAGAAGCCTCCTGAGTCCTGTGGCCACCACAGTGGGCCTCATCATCCTTCCCTGTTACCTGGCC-GGGTGTTCCTGGCTGCCAGACAGTGCCAACTGGTGGTGCCTCCTTCATCAATGCCCCAAGACAGCCA---CTTTTTGGAGAATGAGACCACCAGCTACTTCGTGGCCAGCTCCAACTTACTGGTGAGTATTTTTAGGTAGAATGTTCCAGAGTGGTAAAGTCTTTTGAGCTTTTCTGCTTCTTGTTAGCTGCTTCCTTCTGGTATGGACCACGGGGAATGGCGCAGAACACAGGAACCCACACATGGG-----AGAATAGCAGGCACTTTGGCTGGAGTGTGCCAAAAGAGTTATTCAAGTAGAATAATATCAAACAAGACTGCAGTTGCAAAAAGACATAGCCAACAACTTGGTTTCAGTTTGAGCACCCTAATAAACAAACTGATTTAACCGTCATAGTCT
i aotNan1.NW_018509740v1   C 0 I 1206
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964   0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I

a score=9234296.000000
s hg38.chr6_GL000254v2_alt   773314 1676 +   4827813 CAAGGGATGGGTTTTTCCAAGCAAGAACTCTAGGGTCAGGGTAGCGAATTGCTCAAGAAAGGCCAAGAGCTCAGGGAGACATAGGAACCTCATAAACAGGGTGGCCACAGGCTGGCAGTGCCCAGGTTCAGCCAGGCAAGAGCCACAGGTCAAGGGAGGCTGCAAGAGGCTAAATCCTAATTCCATCACATGCACAAAAATGGATGGGATGGCCAAAAATGACCCCAAAAAATCAGGAAACAAATACGGAATGGGCTTTTTAATTGTTGTTTGCAATCAGAACTTTATGAAAATGACAGAATGTGGTTTCGCATTCTCTGTTGCATTAGAGCCAGTCTGAGCATCAGTATTTGCTCTAAAATGTGTTTAGTCAATAAAGTCAAGAGAACATGTGTGTGGAACACTGAGAAAAGAAGGCAGAGGAA-GTTTGCATTCCTGCAGCCATAGAGGGGGATATTCTAGGGGTGGAGAGGCAGCAGGCAGGGGGAATGTGTGCACAGCCTGGCCGTTGTCCCATCCCCTCATCGCTGGCTTCAGGCCATCCTCCCATAGATGGAGCAGCTATAATGGGAGTGGAGGGTTGAGGGGCAGGGGAGGCATCTGCTGAGCGGCTGGATGGGGTTTGTGTAGTGGGTTAGGATGAGCTCCTCAGAAACCAGCCTGAGCTCTCTGGCTCAGGAGCTTCTCAGGAAGAGCTGAGAAGCGGCAACCCCTGCCTGAGGGGTCCTtgtgttcatttcccatggccacaataacagaggaccacaaactggtgactgaaaacaacagaagtgaattccttcacagttctgaaagcaaagtccaagatcgaggagtcggcagggccgctctttctctgaaggctctaggaaaaaactctttcttgtctcttccagctttggggaactccaggcattctttggcttctggacacgtctttctaacctctgtctccatcctcatgagggcttcccctctgtttgtctctgtgtcctgttctcttcttataagaacaccagttattgcatttagggtccaccctaaatccaggatgatttcaccttgagatccttaactaattgcacctacacagaccatatttccagataaggtcacattctcaggttctatgtagacatgaatttgaggggggacactaacccactatagtcacagtctgtacaaataaattctagattctgcccacctgtggccttacctgttctacttggaagtcattgttccatggaaggtgacccagggaagcagaattgttctcctcctcaggcagatagctcctggggactggcgtgagaattagcaactgtgccagcacatcactttgattggtcaaggtgccccttgctgcctcccagccaagccaagcaggcccaccccagggagcatagGTGGGTAACAGGTGCTGGCGCTcagtttacaaaggaaggccttctgcctcaccacctctgtggacctgcaaaccgccctaaggggtgagtgggaagtccccatcttacagaagatgaaattgaaacccagacaggcgg--agactctcccTGGAGGCCAGATGAATGAAGAGTCAGGAGGCTCAGCTCAACCTTGGGTGTCACCTGCCACCTGTACTGCTGTCCCTGGAGTGGCCCAGGATACTAGGATATGACACTGTCTCCCAGATC
s panTro5.chr6             29745683 1676 + 175400573 CAAGGGATGGGTTTTTCCAAGCAAGAACTCTAGGGTCAGGGTAGTGAATTGCTCAAGAAAGGCCAAGAGCTCAGGGAGACATAGGAACCTCATAAACAGGGTGGCCACAGGCTGGCAGTGCCCAGGTTCAGCCAGGCAAGAGCCACAGGTCAAGGGAGGCTGCAAGAGGCTAAATCCTAATTCTACCACATGCACAAAAATGGATGGGATGGCCAAAAATGACCCCAAAAAATCAGGAAACAAATACGGAATGGGCTTTTTAATTGTTGTTTGCAATCAGAACTTTATGAAAATGACGGAATGTGGTTTCGCATTCTCTGTTGCATTAGAGCCAGTCTGAGCATCAGTATTTGCTCTAAAATGTGTTTAGTCAATAAAGTCAAGAGAACATGTGTGTGGAACACTGAGAAAAGAAGGCAGAGGAA-GTTTGCATTCCTGCAGCCATAGAGGGGGATATTCTAGGGGTGGAGAGGCAGCAGGCAGGGGGAATGTGTGCACAGCCTGGCCGTTGTCCCATCCCCTCATCGCTGGCTTCAGGCCATCCTCCCATAGATGGAGCAGCTATAATGGGAGTGGAGGGTTGAGGGGCAGGGGAGGCATCTGCCGAGCGGCTGGATGCGGTTTGTGTAGTGGGTTAGGATGAGCTCCTCGGAAACCAGCCTGAGCTCTCTGGCTCAGGAGCTTCTCAGGAAGAGCTGAGAAGCGGCAACCCCTGCCTGAGGGGTCCTtgtgttcatttcccatggccacaataacagaggaccacaaactggtgactgaaaacaacagaagtgaattccttcacagttctgaaagcaaagtccaagatcgaggagtcggcagggccgctctttctctgaaggctctaggaaaaaactctttcttgtctcttccagctttggggaactccaggcattctttggcttctggacacgtcattctaacctctgtctccatcctcatgaggccttcccctctgtttgtctctgtgtcctgttctcttcttataagaacaccagttattgcatttagggtccaccctaaatccaggatgatctcaccttgagatccttaactaattgcacctacacagaccatatttccagataaggtcatattctcaggttctatgtagacatgaatttgaggggggacactaacccactatagtcacagtctgtacaaataaattctagattctgcccacctttggccttacctgttctacttggaagtcattgttccatggaaggtgacccagggaagcagaattgttctcctcctcaggcagatagctcctggggactggcgtgagaattagcaactgtgccagcacatcactttgattggtcaaggtgccccttgctgcctcccagccaagccaagcaggcccaccccagggagcatagGTGGGTAGCAGGTGCTGGCGCTcagtttacaaaggaaagccttctgcctcaccacctctgtggacctgcaaaccgccctaaggggtgagtgggaagtccccatcttacagaagacgaaattgaaacccagacaggcgg--agactctccctggaggccagatgaatgaagagtcaggaGGCTCAGCTCAACCTTGGGTGTCACCTGCCACCTGTACTGCTGTCCCTGGAGTGGCCCAGGATACTAGGATATGACACTGTCTCCCAGATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29975413 1676 + 173848474 CAAGGGATGGGTTTTTCCAAGCAAGAACTCTAGGGTCAGGGTAGTGAATTGCTCAAGAAAGGCCAAGAGCTCAGGGAGACATAGGAACCTCATAAACAGGGTGGCCACAGGCTGGCAGTGCCCAGGTTCAGCCAGGCAAGAGCCACAGGTCAAGGGAGGCTGCAAGAGGCTAAATCCTAATTCCACCACATGCACAAAAATGGATGGGATGGCCAAAAATGACCCCAAAAAATCAGGAAACAAATACGGAATGGGCTTTTTAATTGTTGTTTGCAATCAGAACTTTATGAAAATGACGGAATGTGGTTTCGCATTCTCTGTTGCATTAGAGCCAGTCTGAGCATCAGTATTTGCTCTAAAATGTGTTTAGTCAATAAAGTCAAGAGAACATGTGTGTGGAACACTGAGAAAAGAAGGCAGAGGAA-GTTTGCATTCCTGCAGCCATAGAGGGGGATATTCTAGGGGTGGGGAGGCAGCAGGCAGGGGGAATGTGTGCACAGCCTGGCCGTTGTCCCATCCCCTCATCGCTGGCTTCAAGCCATCCTCCCATAGATGGAGCAGCTATAATGGGAGTGGAGGGTTGAGGGGCAGGGGAAGCATCTGCCGAGCGGCTGGATGGGGTTTGTGTAGTGGGTTAGGATGAGCTCCTCGGAAACCAGCCTGAGCTCTCTGGCTCAGGAGCTTCTCAGGAGGAGCTGAGAAGCGGCAACCCCTGCCTGAGGGGTCCTtgtgttcatttcccatggccacaataacagaggaccacaaactggtgactgaaaacaacagaagtgaattccttcacagttctgaaagcaaagtccaagatcgaggagtcggcagggccgctctttctctgaaggctctaggaaaaaactctttcttgtctcttccagctttggggaactccaggcattctttggcttctggacacgtcattctaacctctgtctccatcctcatgaggccttcccctctgtttgtctctgtgtcctgttctcttcttataagaacaccagttattgcatttagggtccaccctaaatccaggatgatctcaccttgagatccttaactaattgcacctacacagaccatatttccagataaggtcatattctcaggttctatgtagacatgaatttgaggggggacactaacccacTATAGTCACAGTCTGTACAAATAAATTCTAGATTCTGCCCACCTGTGGCCTTACCTGTTCTACTTGGAAGTCATTGTTCCATGGAAGGTGACCCAGGGAAGCAGAATTGTTCTCCTCCTCAGGCAGATAGCTCCTGGGGACTGGCGTGAGAATTAGCAACTGTGCCAGCACATCACTTTGATTGGTCAAGGTGCCCCTTGCTGCCTCCCAGCCAAGCCAAGCAGGCCCACCCCAGGGAGCATAGGTGGGTAGCAGGTGCTGGCGCTcagtttacaaaggaaagccttctgcctcaccacctctgtggacctgcaaaccgccctaaggggtgagtgggaagtccccatcttacagaagacgaaattgaaacccagacaggcgg--agactctccctggaggccagatgaatgaagagtcaggaGGCTCAGCTCAACCTTGGGTGTCACCTGCCACCTGTACTGCTGTCCCTGGAGTGGCCCAGGATACTAGGATATGACACTGTCTCCCAGATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5787004 1676 +   6154872 TAAGGGATGGGTTTTTCCAAGCAAGAACTCTAGGGTCAGGGTAGTGAATTGCTCAAGAAAGGCCAAGAGCTCAGGGAGACATAGGAACCTCATAAACAGGGTGGCCACAGGCTGGCAGTGCCCAGGTTCAGCCAGGCAAGAGCCACAGGTCAAGGGAGGCTGCAAGAGGCTAAATCCTAATTCCACCACATGCACAAAAATGGATGGGATGGCCAAAAATGACCCCAAAAAATCAGGAAACAAATACGGAATGGGCTTTTTAATTGTTGTTTGCAATCAGAACTTTATGAAAATGACGGAATGTGGTTTCGCATTCTCTGTTGCATTAGAGCCAGTCTGAGCATCAGTATTTGCTCTAAAATGTGTTTAGTCAATAAAGTCAAGAGAACATGTGTGTGGAACACTGAGAAAAGAAGGCAGAGGAA-GTTTGCATTCCTGCAGCCATAGAGGGGGATATTCTAGGGGTGGAGAGGCAGCAGGCAGGGGGAATGTGTGCACAGCCTGGCTGTTGTCCCATCCCCTTATCGCTGGCTTCAGGCCATCCTCCCATAGATGGAGCAGCTATAATGGGAGTGGAGTGTTGAGGGGCAGGGGAGGCATCTGCTGAGCGGCTGGATGGGGTTTGTGTAGTGGGTTAGGATGAGCTCCTCAGAAACCAGCCTGAGCTCTCTGGCTCAGGAGCTTCTCAGGAAGAGCTGAGAAGCGGCAACCCCTGCCTGAGAGGTCCTtgtgttcatttcccatggccacaataacagaggaccacaaactggtgactgaaaacaacagaagtgaattccttcacagttctgaaagcaaagtccaagatcgaggagtcggcagggccgctctttctctgaaggctctaggaaaaaactctttcttgtctcttccagctttggggaactccaggcattctttggcttctggacacgtcattctaacctctgtctccatcctcatgaggccttcccctctgtttgtctctgtgtcctgttctcttcttataagaacaccagttatcgcatttagggtccaccctaaatccaggatgatctcaccttgagatccttaactaattgcacctacacagaccatatttccagataaggtcatattctcaggttctatgtagacatgaatttgaggggggacactaacccactatagtcacagtctgtacaaataaattctagattctgcccacctgtggccttacctgttctacttggaagtcattgttccatggaaggtgacccagggaagcagaattgttctcctcctcaggcagatagctcctggggactggcgtgagaattagcaactgtgccagcacatcactttgattggtcaaggtgccccttgctgcctcccagccaagccaagcaggcccaccccagggagcatagGTGGGTAGCAGGTGCTGGCGCTcagtttacaaaggaaggccttctgcctcaccacgtctgtggacctgcaaaccgccctaaggggtgagtgggaagtccccatcttacagaagacgaaattgaaacccagacaggcgg--agactctccctggaggccagatgaatgaagagtcaggaGGCTCAGCTCAACCTTGGGTGTCACCTGCCACCTGTACTGCTGTCCCTGGAGTGGCCCAGGATACTAGGATATGACACTGTCTCCCAGATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74480560 1665 + 122973662 CAAGGGATGGGTGTGTCCAATCAAGAACTCTAGGGTCAGGGTAGTGAATTGCTCAGGAAAGGCCAAGAGCTCAGGGAGACATAGGAACCTCATAAACAGGGTGGCCACAGGCTGGCATTCCCCAGGTTCAGCCAGGCAAGAGCCACAGGTCAAGGGAGGCTGTAAGAGGTTAAATCCTAATTCCACCACATGCACAAAAATGGATGGGATGGCCAAAAATGACCCCAAAATATCAGGAAACAAATACGGAATGGGCTTTTTAATTGTTGTTCGCAATCAGAACTTTATGAAAATGATGGAATGTCGTTTCGCATTCTCTGTTGCATCAGAGCCAGTCTCAGCA-----------TCtaaaatatgtttagtcagtaaagtcaagagaacatgtatgtagaacattaagaaaagaaggcagaggaaggtttgcattcctgcagccatagagggggatATTCTAGGGGTGGAGAGGCAGCAGGCAGGGGGGATGTGTGCACAGCCTGGCCGCTGTCCCATCCCCTCATCACTGGCTTCAGGCCATCCTCCCATAGATGGAGCAGCCATAACAGGAGTGGAAGGTTGAGGGA-AGGGGAGGCATCTGCTGAGGGGCTGGACAGGGTTTGTGTAGTGGATTAGGATGAGCTCCTCAGAAACCAGCCTGGACTCTCTGGCTCAGGAGCTTCTCAGCGAGAGCTGAGAGGCGGCAACCCCTGCCTGAGGGGTCCTtgtgttcatttcccatagccacaataacagaggaccacaaactggttactgaaaacaacagaagtgaattccttcacagttctgaaagcaaagtccaagaatgaggagtcagcagggccgctctttctctgaaggctctaggaaaagaccctttcttgtctcttccagctttggggaactccaggcattctttggcttctggacacgtcactctaacctctgtctccatcctcatggggccttcccctctgtttgtctctgtttcctgttctcttcttataagaacaccagttattgcatttagggtccaccctaaatccaggatgatctcaccttaagatccttaactaatcacacctacacagaccatatttccagataaggtcacattctcaggttccatgtagacatgaatttgaggggggacacTAAcccgctacagtcacagtctgtacaaataaattctaggttctgcacacctgcggccttacctgttctacttggaagtcattgttccatggaaggtgacccagggaagcagaattgttctcctcctcaggtggatacctcctgggtactggcgtgagccttagcagctgtgccagcacatcactttgattggtcaagctgccccttgctgcctcccagtcaagccaagcaggcccaCCCCAGGAAGCATAGGTGGGTAGCAGGTGCtggcactcagtttacaaaggaaggccttctgcctcaccacctctgtggacctgcaaaccgccctaaggggtgagtgggaagtcctcatcttacagaagatgaaattgaaacccagacaggcag--agactctccctggaggccggatgagtgaagagtcaggaGGCTCAGCTCAACCTTGGGTGTCACCTGCCACCTGCACTGCTGTCCCTGGGGTGGCGCAGGATACTAGGATATGACATTGTCTCCCAGATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29946096 1612 + 172585720 CGAGGGATGGGTTTGTCCAAGCAAGAACTCTAGGGTCAGGGTAGTGAATTGCTCAGGAAAGGCCAAGAGCTCAGGGAGACATAGGAACCTCATAGACAGGGTGGCCACAGACTGGCAGTCCCCAGGTTCAGCCAGGCAAGAGCCACAGGTCAAGGGAGACTGTAAGAGGCTAAATCCTAACTCCACCACATGCACAAAAATGGATGGGATGGCCAAAAATGACCCCAAAAAATTAGAAAACAAATACGGAATGGGCTTTTTAACTGTTGTTCGCAATCAGAACTTTATGAAAATGATGGAATGTGGTTTCGCATTCTCTGTTGCATCAGAGCCAGTATG-----------------------------------------------------TGTGCGGAACATTGAGAAAAGAAGGCAGAGGAA-GTTT-CACTTCTGCAGCCAAAGAGGGGGATATTCTAGGGGTGGAGAGGTGGCAGGT-GGGGTGTTATGTGCACAGACTGGCCGCTGTCCCATCCCCTCATTGCTGGCTTCAGGCCATCCTCCCACAGATGGAGCAGCCATCACAGGGGTGGAGGGTTGAGGGTCAGGGGAGGCATCTGTTGAGGTGCTGGACGGGGTTTGTGTAGTGAATTAGGATGAGCTCCTCAGAAACCAGCCTGAGCTCTCTGCCTCAGGAGCTTCTCAGGGAGAGGGGACAAGCAGCAACCCCTGCCGGAGGGGTCCTtgtgtttatttcccatagccacaataacagaggaccacaaactggtgactgaaaacaacagcagtgaattccttcacagttctgaaagcaaaatccaagatcgaggagtcggcaggtccgcactttctctgaaggctctaggaaaagactgtttcttgtctcttccagctttggggaactccaggcattctctggtttctggacacatcactctaacctgtgtctccatcctcacgggtccttcccctctgtttgtctctgtgtcctgttctcttctcataagaacaccagttactgcatttagggtccactctaaatccaggatgatctcaccttgagatccttaactagttgcacctacacagaccatatttccagataacgtcacattctcaggctctgtgtagacatgaatttgagggagaacactaacccactacaGTCATAGTCTGTACAAATAAATTCAAGGTTCTGCACACCTGTGGCCTTACCTGTTCTACTGGGAAGCCATTGTTCCATGGAAGGTGACCCAGGGAAGCAGAATTGTTCTCCTCCTCAGGTAGGTACCTCCTGGGGACTGGCATGAGCATTAGCAACTGTGCCAGCACATCACTTTGCTTGGTCAAGGTGCCCCTTGCTGCCTCCCAGCCAAACCAAGCAGGCCCACCCCAGGGAGCCTAGGTGGGta----------gcactcagtttacaaaggaaggccttctgcctcaccacctctgtggacctgcgaactgccataagaggtgagtgtgaaatccccatcttacagaagacgaaattgaaactcagacaggcagcaagactctccctcgaggccagatgagggaagagtcaggaGGCTCAGCTCAACCTTGGGTGTCACCTGCCACCTGCACAGCTGTCCCTGGAGTGGCCCA-GATACTAGGATATGACACTGTCTCCCAGATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29610028 1612 - 170955103 CGAGGGATGGGTTTGTCCAAGCAAGAACTCTAGGGTCAGGGTAGTGAATTGCTCAGGAAAGGCCAAGAGCTCAGGGAGACATAGGAACCTCATAGACAGGGTGGCCACAGACTGGCAGTCCCCAGGTTCAGCCAGGCAAGAGCCACAGGTCAAGGGAGATTGTAAGAGGCTAAATCCTAACTCCACCACATGCACAAAAATGGATGGGATGGCCAAAAATGACCCCAAAAAATTAGAAAACAAATACGAAATGGGCTTTTTAACTGTTGTTCGCAATCAGAACTTTATGAAAATGATGGAATGTGGTTTCGCATTCTCTGTTGCATCAGAGCCAGTATG-----------------------------------------------------TGTGCGGAACATTGAGAAAAGAAGGCAGAGGAA-GTTT-CACTTCTGCAGCCAAAGAGGGGGATATTCTAGGGGTGGAGAGGTGGCAGGT-GGGGTGTTATGTGCACAGACTGGCCGCTGTCCCATCCCCTCATTGCTGGCTTCAGGCCATCCTCCCACAGATGGAGCAGCCATCACAGGGGTGGAGGGTTGAGGGTCAGGGGAGGCATCTGTTGAGGTGCTGGACGGGGTTTGTGTAGTGAATTAGGATGAGCTCCTCAGAAACCAGCCTGAGCTCTCTGCCTCAGGAGCTTCTCAGGGAGAGGGGACAAGCAGCAACCCCTGCCGGAGGGGTCCTtgtgtttatttcccatagccacaataacagaggaccacaaactggtgactgaaaacaacagcagtgaattccttcacagttctgaaagcaaaatccaagatcgaggagtcggcaggtccgcactttctctgaaggctctaggaaaagactgtttcttgtctcttccagctttggggaactccaggcattctctggtttctggacacatcactctaacctctgtctccatcctcacgggtccttcccctctgtttgtctctgtgtcctgttctcttctcataagaacaccagttactgcatttagggtccactctaaatccaggatgatctcaccttgagatccttaactagttgcacctacacagaccatatttccagataacgtcacattctcaggctctatgtagacatgaatttgagggagaacactaacccactacaGTCATAGTCTGTACAAATAAATTCAAGGTTCTGCACACCTGTGGCCTTACCTGTTCTACTGGGAAGCCATTGTTCCATGGAAGGTGACCCAGGGAAGCAGAATTGTTCTCCTCCTCAGGTAGGTACCTCCTGGGGACTGGCATGAGCATTAGCAACTGTGCCAGCACATCACTTTGCTTGGTCAAGGTGCCCCTTGCTGCCTCCCAGCCAAGCCAAGCAGGCCCACCCCAGGGAGCCTAGGTGGGta----------gcactcagtttacaaaggaaggccttctgcctcaccacctctgtggacctgcgaactgccctaagaggtgagtgtgaaatccccatcttacagaagacgaaattgaaactcagacaggcagcaagactctccctcgaggccagatgagggaagagtcaggaGGCTCAGCTCAACCTTGGGTGTCACCTGCCACCTGCACAGCTGTCCCTGGAGTGGCCCA-GATACTAGGATATGACACTGTCTCCCAGATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2653445 1621 -   2996164 CGAGGGATGGGTTTGTCCAAGCAAGAACTCTAGGGTCAGGGTAGTGAATTTCTCAGGAAAGGCCAAGAGCTCAGGGAGACATAGGAACCTCATAGACAGGGTGGCCACAGACTGGCAGTCCCCAGGTTCAGCCAGGCAAGAGCCACAGGTCAAGGGAGACTGTAAGAGGCTAAATCCTAACTCCACCACATGCACAAAAATGGATGGGATGGCCAAAAATGACCCCAAAAAATTAGAAAACAAATACGGAATGGGCTTTTTAACTGTTGTTCGCAATCAGAACTTTATGAAAATGATGGAATGTGGTTTCGCATTCTCTGTTGCATCAGAGCCAGTATG-----------------------------------------------------TGTGCGGAACATTGAGAAAAGAAGGCAGAGGAA-GTTT-CACTTCTGCAGCCAAAGAGGGGGATATTCTAGGGGTGGAGAGGTGGCAGGT-GGGGTGTTATGTGCACAGACTGGCCGCTGTCCCATCCCCTCATTGCTGGCTTCAGGCCATCCTCCCACAGATGGAGCAGCCATCACAGGGGTGGAGGGTTGAGGGGCAGGGGAGGCATCTGTTGAGGTGCTGGACGGGGTTTGTGTAGTGAATTAGGATGAGCTCCTCAGAAACCAGCCTGAGCTCTCTGCCTCAGGAGCTTCTCAGGGAGAGGGGACAAGCAGCAACCCCTGCCGGAGGGGTCCTtgtgtttatttcccatagccacaataacagaggaccacaaactggtgactgaaaacaacagcagtgaattccttcacagttctgaaagcaaaatccaagatcgaggagtcggcaggtccgcactttctctgaaggctctaggaaaagactgtttcttgtctcttccagctttggggaactccaggcattctctggtttctggacacatcactctaacctctgtctccatcctcacgggtccttcccctctgtttgtctctgtgtcctgttctcttctcataagaacaccagttactgcatttagggtccactctaaatccaggatgatctcaccttgagatccttaactagttgcacctacacagaccatatttccagataacgtcacattctcaggctctatgtagacatgaatttgagggagaacactaacccactacaGTCATAGTCTGTACAAATAAATTCAAGGTTCTGCACACCTGTGGCCTTACCTGTTCTACTGGGAAGCCATTGTTCCATGGAAGGTGACCCAGGGAAGCAGAATTGTTCTCCTCCTCAGGTAGGTACCTCCTGGGGACTGGCATGAGCATTAGCAACTGTGCCAGCACATCACTTTGCTTGGTCAAGGTGCCCCTTGCTGCCTCCCAGCCAAGCCAAGCAGGCCCACCCCAGGGAGCCTAGGTGGGTAGCAGgta-tggcactcagtttacaaaggaaggccttctgcctcaccacctctgtggacctgcgaactgctctaagaggtgagtgtgaaatccccatcttacagaagacgaaattgaaactcagacaggCAGCAAGACTCTCCCTCGAGGCCAGATGAGGGAAGAGTCAGGAGGCTCAGCTCAACCTTGGGTGTCACCTGCCACCTGCACAGCTGTCCCTGGAGTGGCCCA-GATACTAGGATATGACGCTGTCTCCCAGATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     405205 1666 +    766320 CGAGGGATGGGTTTGTCCAAGCAAGAACTCTAGGGTCAGGGTAGTGAATTGCTCAGGAAAGGCCAAGAGCTCAGAGAGACATAGGAACCTCATAGACAGGGTGGCCACAGACTGGCAGTCCCCGGGTTCAGCCGGGCAAGAGCCACAGGTCAAGGGAGACTGTAAGAGGCTAAATCCTAACTCTACCACATGCACAAAAATGGATGGGATGGCCAAAAATGACCCCAAAAAATTAGGAAACACATACGGAATGGGCTTTTTAACTGTTGTTTGCAATCAGAACTTTATGAAAATGATGGAATGTGGTTTCGCATTCTCTGTTGCATCGGAGCCAGTCTGAATATCAGTATTTGCTCTGAAATGTGTTTAGTCAGTAAAGTCAGGAGAACA--TGTGTGGAACATTGAGAAAAGAAGGTAGAGGAA-GATT-CACTCCTGCAGCCAAAGAGGGGGATATTCTAGGGGTGAAGGG--GGCAGGC-GGGGTGATGTGTGCACAGATTGGCCGCTGTCCCATCACCTCATTGCTGGCTTCAGGCCATCCTCCCACAGATGGAGCAGCCATCACAGGAGTGGAGGGTTGAGGGGCAGGGGAGGCATCTGTTGAGGTGCTGGACGGGGTTTGTGCAGTGaattaggatgagctcctcagaaaccagcctgagctctctgcctcaggagcttctcagggagaggAGACAAGCAGCAACCCCTGCCAGAGGGGTCCTCgtgtttatttcccatagccacaataacagaggaccacaaactggtgactgaaaacaacagaagtaaattccttcacagttctgaaagcaaaatccaagatcgaggagtcggcaggaccgagctgtctctgaaggctctaggaaaagac----tcttgtctcttccagctttgatgagctccaggcattctctggcttctggacacatcactctaacctctgtctccatcctcatgggtccttcccctctgtttgtctctgtgtcctgttctcttctcataagaacaccaggtattgcatttagggtccaccctaaatccaggatgatatcaccttgagatccttaagtagttgcacctacacagaccatatttccagataaggtcacattctcaggctctatgtagacatgaatttgaggggggacactaacccactacaGTCACAGTCTATACAAATAAATTCAAGCTTCTGCACACCTGTGGCCTTACCTGTTCTACTAGGAAGCCATTGTTCCATGGAAGGTGACCCAGGGAAGCAGAATTGTTCTCCTCCTCAGGTGGGTACCTTCTGGGGACTGGCATGAGCATTAGCAACTATGCCAGCACATCACTTTGATTGGTCAAGGTGCCCCTTGCTGCCTCCCAGCCAAGCCAAGCAGGCCCACCCCAGGGAGCCTAGGTGGGTAGCAGgta-tggcactcagtttacaaagaaaggccttctgcctcaccacctctgtggacctgcaaactgccctaaggggtgagtgtgaagtccccatcttacagaagatgaaattgaaatccagacaggcaacaagactctcccttgaggccagatgagggaagagtcaggaGGCTCAGCTCAACCTTGGGTGTCACCTGCCACCTGCACAGCTGTCCCTGGAGTGGCCCA-GATACTAGGATATGACACTGTCTCCCAGATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28862978 1658 -  71996105 CGAGGGATGGGTTTGTCCAAGTAAGAACTCTAGGGTCAGGGTAGTGAATTGCTCAGGAAAGGCCAAGAGCTCAGGGAGA-----------CATAGACAGGGTGGCCACAGACTGGCAGTCCCCAGGTTCAGCCGGGCAAGAGCCACAGGTCAAGGGAGACTGTAAGAGGCTAAATCCTAACTCCACCACATGCACAAAAATGGATGGGATGGCCAAAAATGACCCCAAAAAATTAGGAAACAAATATGGAATGGGCTTTTTAACTGTTCTTCACAATCAGAACTTTATGAAAATGATGAAATGTGGTTTCGCATTATCTGTTGCATCGGAGCCAGTCTGAATATCAGTATTTGCTCTGAAATGTGTTTAGTCAGTAAAGTCAGGAGAACA--TATGTGGAACATTGAGAAAAGAAGGCAGAGGAA-GTTT-CACTCCTGCAGCCAAAGAGGGTGATATTCTAGGGGTGGAGAGGTGGCAGGC-GGGGTGATGTGTGCACAGCCTGGCCGCTGTCCCGTTACCTCATTGCTGGCTTCAGGCCATCCTCCCACAGATGGAGCAGCCATCACAGGGGTGGAGGGTTGAGGAGCAGGGGAGGCATCTGCTGAGGCGCTGGACGGGGTTTGTGCAGTGAATTAGGATGAACTCCTCAGAAACCAGCCTGAGCTCTCTGCCTCAGGAGCTTCTCAGGGAGAGAGGACAAGCGGCAACCCCTGCCAGAGGGGTCCTtgtgtttatttcccacagccacaataacagaggaccacaaactggtgactgaaaacaacagcagtgaattccttcacagttctgaaagcaaaatccaagatcaagaagttggcaggaccgagctttctctgaaggctctaggaaaagac----tcttgtctcttccagctttgatgagctccaggcattctctggcttctggacacatcactctaacctctgtctccatcctcatgggtccttcccctctgtttgtctctgtgtcctgttctcttctcataagaacaccaggtattgcatttagggtccaccctaaatccaggatgatatcaccttgagatccttaactagttgcacctacacagaccatatttccagataaggtcacgttctcaggctctatgtagacatgaatttgaggggggacactaacccaCTATAGTCACAGTCTATACAAATAAATTCAAGGTTCTGCACACCTGTGGCCTTACCTGTTCTACTGGGAAGCCATTGTTCCATGGAAGGTGACCCAGGGAAGCAGAATTGTTCTCCTCCTCAGGTGGGTACCTCCTGGGGACTGGCATGAGCATTAGTAACTGTGCCAGCACATCACTTTGATTGGTCAAGGTGCCCCTTGCTGCCTCCCAGCCAAGCCAAGCAGGCCCACCCCAGGGAGCCTAGGTGGGTAGCAGGTGCTGGCACTCAGTTTACAAAGGAAGGCCTTCTGCCTCACCACCTCTGTGGACCTGCGAACTGCCCTAAGGGGTGTGTGTGAAGtccccatcttacagaagatgaaattgaaacccagacaggcaacgggactctccctcgaggccagatgagggaagagtcaggaGGCTCAGCTCAACCTTGGGTGTCACCTGCCACCTGCACAGCTGTCCCTGGAGTGGCCCA-GATACTAGGATATGATACTATCTCCCAGATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      34023 1622 +    290775 CGAGGGATGGGTTTGTCCAAGCAAGAACTCTAGGGTCAGGGTAGTGAATTGCTCAGGAAAGGCCAAGAGCTCAGGGAGACATAGGAACCTCATAGACAGGGTGGCCACAGACTGGCAGTCCCCGGGTTCAGCCAGGCAAGAGCCACAGGTCGAGGGAGACTGTAAGAGGCTAAATCCTAACTCTACCACATGCACAAAAATGGATGGGATGGCCAAAAATGACCCCAAAAAATTAGGAAACACATACGGAATGGGCTTTTTAACTGTTGTTTGCAATCAGAACTTTATGAAAATGATGGAATGTGGTTTCGCATTCTCTGTTGCATCAGAGCCAGTATG-----------------------------------------------------TGTGTGGAACACTGAGAAAAGAAGGCAGAGGAA-GTTT-CACTCCTGCAGCCAAAGAGGGGGATATTCTAGGGGTGGAGAGGTGGCAGGC-GGGGTGATGTGTGCACAGATTGGCCGCTGTCCCATCACCTCATTGCTGGCTTCAGGCCATCCTCCCACAGATGGAGCAGCCATCACAGGGGTGGAGGGTTGAGGGGCAGGGGAGGCATCTGTTCAGGTGCTGGACGGGGTTTGTGCAGTGAATTAGGATGAGCTCCTCAGAAACCAGCCTGAGCTCTCTGCCTCAGGAGCTTCTCAGGGAGAGGAGACAAGCAGCAACCCCTGCCAGAGGGGTCCTCgtgtttatttcccatagccacaataacaaaggaccacaaactggtgactgaaaacaacggaagtgaattccttcacagttctgaaagcaaaatccaagatcgaggagtcggcaggaccgagctgtctctgaaggctctaggaaaagactctgtcttgtctcttccagctttggggaactccaggcattctctggcttctggacacatcactctaacctctgtctccatcctcacgggtccttcccctctgtttgtctctgtgtcctgttctcttctcataagaacaccaggtattgcatttagggtccaccctaaatccaggatgatatcaccttgagatccttaactagttgcacctacacagaccatatttccagataacgtcacgttctcaggctctatgtagacatgaatttgagggagaacactaacccactacaGTCACAGTCTATACAAATAAATTCAAGCTTCTGCACACCTGTGACCTTACCTGTTCTACTGGGAAGCCATTGTTCCATGGAAGGTGACCCAGGGAAGCAGAATTGTTCTCCTCCTCAGGTGGGTACCTCCTGGGGACTGGCATGAGCATTAGTAACTGTGCCAGCACATCACTTTGATTGGTCAAGGTGCCCCTTGCTGCCTCCCATCCAAGCCAAGCAGGCCCACCCCAGGGAGCCTAGGTGGGTAGCAGGTGCTGGCACTCAGTTTACAAAGGAAGGCCTTCTGCCTCACCACCTCTGTGGACCTGTGaactgccctaaggggtgagtgtgaagtccccatcttacagaagacgaaattgaaactcagacaggCAGCAAGACTCTCCCTCGAGGCCAGATGAGGGAAGAGTCAGGAGGCTCAGCTCAACCTTGGGTGTCACCTGCCACCTGCACAGCTGTCCCTGGAGTGGCCCA-GATACTAGGATATGACACTGTCTCCCAGATC
i manLeu1.NW_012099233v1   C 0 T 7272
s colAng1.NW_012115566v1    2467910 1663 -   3067355 CGAGGGATGGGTTTGTCCAAGCAAGA--------------GTAGTGAATTGCTCAGGAAAGGCCAAGAGCTCAGGGAGACATAGGAACCTCATAGACAGGGTGGCCACAGACTGGCAGTCCCCAGGTTCAGCCAGGCAAGAGCCACAGGTCGAGGGAAACTGTAAGAGGCTAAATCCTAATTCCACCACGTGCACAAAAATGGATAGGATGGCCAAAAATGACCACAAAAAATTAGGAAATGAATTCAGAATGGGCTTTTTAACTGTTGCTCACAATCAGAACTTTATGAAAATGATGGAATGTGGTTTTGCATTCTCTGTTGCTTCAGAGCCAGTCTGAGCATCAGTATTTGCTCtaaaatgtgtttagtcagtaaagtcaggagaacatgtgtgtggaacattgagaaaagaaggcagaggaa-gtttgcattcctgcagccatagaggaggATATTCTAGGGATGGAGAGGCAGCAGGT-GAGGTGATGTATGCACAGACTGGCCGCTGTCCCATCACCTCATTGCTGGCTTCAGGCCATCCTCCCACAGATGGAGCAGCCATCACAGGGGTGGAGGGTTGAGGGGCAGGGGAGGCATCTGCTGAGGCGCTGGACGGGGTTTGTGTAGTGGATTAGGATGAGCTCCTCAGAAACCAGCCTGAGCTCTCTGCCTCAGGAGCTTCTCAGGGAGAGGGGACAAGCAGCAACCCCTGCCAGAGGGGTCCTtgtgtttatttcccatagccgcaataacagaggaccacaaactggtgactgaaaacaacagaagtgaattccttcacagttctgaaagcaaaatccaagatcaaggagtcggcaggaccacgctttctctgaaggctctaggaaaagactctttcttgtctcttccagctttgatgaactccaggcattctctggcttctggacacatcactctaacctctgtctccatcctcatgggtccttcccctctgtttgtctccgtgtcctattctcttctcataagaacaccatttactgcatttagggtccaccctaaatccaggatgatctcaccttgagatccttaactagttgcacctacacagaccatatctccagataaggtcacattctcagactctatgtaaacataaatttgagggggaacactaacccactacaGTCACAGTCTATACAAATAAATTCAAGGTTCTGCACACCTGTGGCCTTACCTGTTCTACTGGGAAGCCATTGCTCCACGGAAGGTGACCCAGGGAAGCAGAATTGTTCTCCTCCTCAGGTGGGTACCTCCTGGGGACTGGCATGAGCATTAGCAACTGTGCCAGCACATCACTTTGATTGGTCAAGGTGCCCCTTGCTGCCTCCCAGCCAAGCCAAGCAGGCCCACCCCAGGGAGCCTAGGTGGGTAGCAGGTGCTGGTACTcagtttacaaaggaaggccttctgcctcaccacctctgtggatctgcgaactgccctaaggggtgagtgtgaagtccccatcttacagaagatgaaattgaaacccagacaggcaacgagactctccctcgaggccagatgagggaagagtcaggaGGCTCAGCTCAACCTTGGGTGTCACCTGCCACCTGCACAGCTGTCCCTGGAGTGACCCAGGATACTAGGATATGACACTGTCTCCCAGATC
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964    0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I

a score=1288549.000000
s hg38.chr6_GL000254v2_alt   774990 226 +   4827813 ATGAGCAGGTTGAGTCAGGTACGAGGGAAGAGGAGCCAGCAGATGACACTGTCTAAACCCATCTGGTCATCTCAGGAAGGCAGAAGGGTTGGCCAGTCCAGCACAGACCTCGTGCATCCTGCATTTCAGAGGATCCTGTCTGTGATGCTCCTCTTCACGGCATTGGAGCTCAGTGTCGCTATCCTTTCTTCTGTCCTCTTGTGAAAAAAGACCTGTTCAGATGTCC
s panTro5.chr6             29747359 226 + 175400573 ATGAGCAGGTTGAGTCAGGTACGAGGGAAGAGGAGCCAGCAGATGACACTGTCTAAACCCATCTAGTCATCTCAGGAAGGCAGAAGGGTTGGCCAGTCCAGCACAGACCTCGTGCATCCTGCATTTCAGAGGATCCTGTCTGTGATGCTCCTGTTCACGGCATTGGAGCTCAGTGTCGCTATCCTTTCTTCTGTCCTCTTGTGAAAAAAGACCTGTTCAGATGTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29977089 226 + 173848474 ATGAGCAGGTTGAGTCAGGTACGAGGGAAGAGGAGCCAGCAGATGACACTGTCTAAACCCATCTAGTCATCTCAGGAAGGCAGAAGGGTTGGCCAGTCCAGCACAGACCTCGTGCATCCTGCATTTCAGAGGATCCTGTCTGTGATGCTCCTGTTCACGGCATTGGAGCTCAGTGTCGCTATCCTTTCTTCTGTCCTCTTGTGAAAAAAGACCTGTTCAGATGTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5788680 226 +   6154872 ATGAGCAGGTTGAGTCAGGTACGAGGGAAGAGGAGCCAGCAGATGACACTGTCTAAACCCATCCGGTCATCTCAGGAAGGCAGAAGGGTTGGCCAGTCCAGCACAGACCTCGTGCATCCTGCATTTCAGAGGATCCTGTCTGTGATGCTCCTCTTCACGGCATTGGAGCTCAGTGTCGCTATCCCTTCTTCTGTCCTCTTGTGAAAAAAGACCTGTTCAGATGTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74482225 226 + 122973662 GTGAGCAGATTGAGTCAGGTACAAGGGAAGAGGAGCCAGCAGATGACACTGCCTAAACCCATCTGGTCATCTCAGGAAGGCAGAAGGATTGGCCAGTCCAGCACAGACCTTGTGCATCCTGCATTTCAGAGGATCCTGTCTGTGATGCTCCTCTTCACGGCATTGGAGCTCAGTGTCGCTATCCCTTCTTCTGCCCTCTTGTGAAAAAAGACCTGTTCAGATGTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29947708 223 + 172585720 ATGAGCAGGTTGAGTCAGGTACAAGGGAAAAGGAGCCAGCAGATAACACTGTCTAAACCCATCTGGTCATCCCAGGAAGGCAGAAGGGTTGGCCAATCCAGCACAGACCCTGTGCATCCTGCATTTCAGAGGATCCTGTCTGTGATGCTCCTCTTCACGGCATTGGAGCTCAGCATCGCTATCC---CTTCTGTCTTCTTTTGAAAAAAGACCTGTTCAGATGTCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29611640 223 - 170955103 ATGAGCAGGTTGAGTCAGGTACAAGGGAAAAGGAGCCAGCAGATAACACTGTCTAAACCCATCTGGTCATCCCAGGAAGGCAGAAGGGTTGGCCAATCCAGCACAGACCCTGTGCATCCTGCATTTCAGAGGATCCTGTCTGTGATGCTCCTCTTCACGGCATTGGAGCTCAGCATCGCTATCC---CTTCTGTCTTCTTTTGAAAAAAGACCTGTTCAGATGTCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2655066 223 -   2996164 ATGAGCAGGTTGAGTCAGGTACAAGGGAAAAGGAGCCAGCAGATAACACTGTCTAAACCCATCTGGTCATCCCAGGAAGGCAGAAGGGTTGGCCAATCCAGCACAGACCCTGTGCATCCTGCATTTCAGAGGATCCTGTCTGTGATGCTCCTCTTCACGGCATTGGAGCTCAGCATCGCTATCC---CTTCTGTCTTCTTTTGAAAAAAGACCTGTTCAGATGTCG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     406871 226 +    766320 GTGAGCAGGTTGAGTCAGGTACAAGGGAAAAGGAGCCAGCAGATGACACTGTCTAAACCCATCTGGTCATCCCAGGAAGGCAGAAGGGTTGGCCGATCCAGCACAGACCCTGTGCATCCTGCATTTCAGAGGATCCTGTCTGTGATGCTCCTCTTCATGGCATCGGAGCTCAGCATCGCTATCCCTTCTTCTGTCTTCTTTTGAAAAAAGACCTGTTCAGATGTCG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28864636 226 -  71996105 GTGAACAGGTTGAGTCAGGTACAAGGGAAAAGGAGCCAGAAGATGACACTGTCTAAACCTATCTGGTCATCCCAGGAAGGCAGAAGGGTTGGCCAATCCAGCACAGACCCTGTGCATCCTGCATTTCAGAGGATCCTGTCTGTGACGCTCCTCTTCACAGCATTGGAGCTCAGCATCGCTATCCCTTCTTCTGTCTTCTTTTGAAAAAAGACCTGTTCAGATGTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      28373 226 +    290775 ATGAGCAGGTTGAGTCAGGTACAAGGGAAAAGGAGCCAGCAGATGACACTGTCTAAACCCATCTGGTCATCCCAGGAAGGCAGAAGGATTGGCCAATCCAGCACAGACCCTGTGCATCCTGCATTTCAGAGGATCCTGTCTGTGATGCTCCTCTTCACGGCATTGGAGCTCAGCATCGCTATCCCTTCTTCTGTCTTCTTTTGAAAAAAGACCTGTTCAGATGTCA
i manLeu1.NW_012099233v1   T 7272 I 7100
s colAng1.NW_012115566v1    2469573 219 -   3067355 ATAAGCAGGTTGAGTCAGGTACAAGGGAAAAGGAGCCAGCAGTTGACACTGTCTAAACCCATCTGGTCATCTCAGGAAGGCAGAAGGGTTGGCCAATCCAGCACAGACCCTGTGCATCCTGCATTTCAGAGGATCCTGTCTGTGATGCTCCTCTTAACGGCATTGGAGCTCAGTATTGCTATCCCTTCTTCTGTCCTCTTGTGAAAAAAGA-------GGATGTCG
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964   0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I

a score=4463648.000000
s hg38.chr6_GL000254v2_alt   775216 777 +   4827813 TCAGGGTGAACCTGctgtgccctgggctctggggcctgggtggtggcacagggcatggtcctggggccAATGGCAGGTGGTACTAAGGTCGACCCATGAATCTTGACCTTAGTCGAAGTCGACAGGTTTTGTTGAGTGAGGCAGCAGCCGGCAGAACAGGATGAGAGCAAGTGCCCAGGGTGGAGGAATCACAATAGGAAGCTATGGGACCAAAGAGAGCACATCACACATCTGCTCACTTAGCAAAGCAGGAAACAGGCTAAGGTGCAGAAGCCCTCTGGTCCctggaaccctcaagtttttatatttgtgtatcccttgtcttttgtttcaagatattttttaatttctctggtttgattttttGGAGATAAAAGGCCTTCCACTCAGCGTACAAGGCCTGTTCACTTGCTTTGTCCTCTCCAGAA--TGTGTTTCCTGACCCAAAGTGACACAGTGATCACCAGCATGCCCCAGGCAGCATTTGCTGACACCGTCCTGGAGATGAACAAGGAGTGCACCCTTAGTGTG---------------GGGGC------AGAGAGAGAGAGAGCACATTGTCTGCAGGAGTCAGCTGAATGATCTCACAGACCCCACCTGCTGGGCTCTTCCATTTTATCACAATTATTCCGCCTGTTCACGTGCAGAG---AGAACACTTGGGGCAGATTTTAAGACCTTAGAGAGTAACTTGTTTACAAATAAAATATCTCTTTGATGATGTATTTGGATTCC----------------------ATGTCATTTTGCCACATTTCTCTTAATTTACTGGACACCAACAATGATAT
s panTro5.chr6             29747585 777 + 175400573 TCAGGGTGAACCTGCTGTGCCGTGGGCTCTGGGGCCTGGGTGGTGGCACAGGGCATGGTCCTGGGGCCAATGGCGGGTGGTACTAAGGTCGACTCATGAATCTTGACCTTAGTCGAAGTCGACAGGTTTTGTTGAGTGAGGCAGCAGCCGGCAGAACAGGATGAGAGCAAGTGCCCAGGGTGGAGGAATCACAATAGGAAGCGATGGGACCAAAGAGAGCACATCACACATCTGCTCATTTAGCAAAGCAGGAAACAGGCTAAGGTGCAGAAGCCCTCTGGTCCCTGGAACCCTCAAGTTTTTATATTTGTGTATCCCTTGTCTTTTGTTTCAAGATATTTTTTAATTTCTCTGGTTTGATTTTTTGGAGATAAAAGGCCTTCCACTCAGCGTACAAGGCCTGTTCACTTGCTTTGTCCTCTCCAGAATGTGTGTTTCCTGACCCAAAGTGACACAGTGATCACCAGCATGCCCCAGGCAGCATTTGCTGACACTGTCCTGGAGATGAACAAGGAGTGCACCCTTAGTGTG---------------GGGGC--------AGAGAGAGAGAGCACATTGTCTGCAGGAGTCAGCATAATGATCTCACAGACCCCACCTGCTGGGCTCTTCCATTTTATCACAATTATTCCGCCTGTTCACGTGCAGAG---AGAACACTTGGGGCAGATTTTAAGACCTTAGAGAGTAACTTGCTTACAAATAAAATATCTCTTTGATGACGTATTTGGATTCC----------------------ATGTCATTTTGCCACATTTCTCTTAATTTACTGGACACCAACAATGATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29977315 777 + 173848474 TCAGGGTGAACCTGCTGTGCCGTGGGCTCTGGGGCCTGGGTGGTGGCACAGGGCATGGTCCTGGGGCCAATGGCGGGTGGTACTAAGGTCGACTCATGAATCTTGACCTTAGTCGAAGTCGACAGGTTTTGTTGAGTGAGGCAGCAGCCGGCAGAACAGGATGAGAGCAAGTGCCCAGGGTGGAGGAATCACAATAGGAAGCGATGGGACCAAAGAGAGCACATCACACATTTGCTCATTTAGCAAAGCAGGAAACAGGCTAAGGTGCAGAAGCCCTCTGGTCCCTGGAACCCTCAAGTTTTTATATTTGTGTATCCCTTGTCTTTTGTTTCAAGATATTTTTTAATTTCTCTGGTTTGATTTTTTGGAGATAAAAGGCCTTCCACTCAGCGTACAAGGCCTGTTCACTTGCTTTGTCCTCTCCAGAATGTGTGTTTCCTGACCCAAAGTGACACAGTGATCACCAGCATGCCCCAGGCAGCATTTGCTGACACTGTCCTGGAGATGAACAAGGAGTGCACCCTTAGTGTG---------------GGGGC--------AGAGAGAGAGAGCACATTGTCTGCAGGAGTCAGCTGAATGATCTCACAGACCCCACCTGCTGGGCTCTTCCATTTTATCACAATTATTCCGCCGGTTCACGTGCAGAG---AGAACACTTGGGGCAGATTTTAAGACCTTAGAGAGTAACTTGCTTACAAATAAAATATCTCTTTGATGACGTATTTGGATTCC----------------------ATGTCATTTTGCCACATTTCTCTTAATTTACTGGACACCAACAATGATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5788906 777 +   6154872 TCAGGGTGAACCTGCTGTGCCGTGGGCTCTGGGGCCTGGGTGGTGGCACAGGGCATGGTCCTGGGGCCAATGGCAGGTGGTACTAAGGTCGACCCATGAATCTTGACCTTAGTCGAAGTCGACAGGTTTTGTTGAGTGAAGCAGCAGCCGGCAGAACAGGATGAGAGCAAGTGCCCAGGGTGGAGGAATCACAATAGGAAGCGATGGGACCAAAGAGAGCACATCACACATCTGCTCATTTAGCAAAGCAGGAAACAGGCTAAGGTGCAGAAGCCCTCTGGTCCCTGGAACCCTCAAGTTTTTATATTTGTGTATCCCTTGTCTTTTGTTTCAAGATATTTTTTAATTTCTCTGGTTTGATTTTTTGGAGATAAAAGGCCTTCCACTCAGCGTACAAGGCCTGTTCACTTGCTCTGTCCTCTCCAGAATGTGTGTTTCCTGACCCAAAGTGACACAGTGATCACCAGCATGCCCCAGGCAGCATTTGCTGACACTGTCCTGGAGATGAACAAGGAGTGCACCCTTAGTGTG---------------GGGGC--------AGAGAGAGAGAGCACATTGTATGCAGGAGTCAGCTGAATGATCTCACAGACCCCACCTGCTGGGCTCTTCCATTTTATCAGAATTATTCCGCCTGTTCACGTGCAGAG---AGAACTCTTGGGGCAGATTTTAAGACCTTAGAGAGTAACTTGTTTACAAATAAAATATCTCTTTGATGACGTATTTGGATTCC----------------------ATGTCATTTTGCCACATTTCTCTTAATTTACTGGACACCAACAATGAGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74482451 776 + 122973662 TCAGGGTGAATCTGCTGTGCCCTGAGCTCTGGGGCCTGGGTGGTGGCACAGGGCATGGTCCTGGGGCCAATGGCAGGTGGTACTAAGGTCGACCCATGAATCTTGACCTTAGTCGAAGTCAACAGGTTTTGTTGAGTGAGGCAGCAGCCAGCAGAACAGGATGAGAGCAAGTACCCAGGGTGGAGGAATCACAATAGGAAGCGATGGGACCAAAGAGGGTACATCACACATC-ACTCATTTAGCAGAGCAGGAAACAGGCTAAGGTGCAGAAGCCCTCTGGTCCCTGGAACCCTCAAGTTTTTATATTTGTGTATCCCTTGTCTTTTGTTTCAAGATATTTTTTAATTTTTCTGGTTTGATTTTTTGGAGATTAAAGGCCTTCCACTCAGCGTACAAGGCCTGTTCACTTGCTTTGTCCTCTCCAGAATGTGTGTTTCCTGACCCAAAGTGACACAGTGATCACCAGCATGCCCCAGGCAGCATTTGCTGACACTGTCCTGGAGATGAACAAGGAGTGTACCCTTAGCGTG---------------GGGGC--------AGAGAGAGAGAGCACATTGTCTGCTGGAGTCAGCTGAATGATCTCACAGAACCCACCTGCTGGGCTCTTCCATTTTATCACAATTATTCCGCCTGTTCACGTGCAGAG---AGAACTCTTGGGGCAGATTTTAAGACCTTAGAGAGTAACTTGTTTACAAATAAAATATCTCTTTGATGACGTATTTGGATTCC----------------------ATGTCATTTTGTCACATTTCTCTTAATTTACTGGACACCAACAATGAGAT
i nomLeu3.chr1a            C 0 I 647
s rheMac8.chr4             29947931 786 + 172585720 TCAGGGTGAATCTGTTGTGCcctgggctctggggcctgggtggtggcacagggcatggtcctggggccAACGGCAGGTGATACTAAGGTCGACCCATGAATCTTGATCTTAGTCGAAGTCGACAGGTTTTGCTGAGTGAGGCAGTAGCTGGCAGAACAGGATGGGAGCAAGTGCCCAGGGTGGAGGAATCACAACAGGAAGCGATGGAACCAAAGAGAGCACATCACAAATCGGCTCATTTAGCAGAGCGGGAAACAGGTTAAGGTACAGAAGCCCTCTGGCCCCTGGAACCCTCAAGTTTTTATGTTTGTGCTTCCCTTGTCTTTTGTTTCAAGATATTTTTTAATTTTTCTGGTTTGATTTTTTGGAAATAAAAGGCCTTCCACTCAGAGTACAAGGTCTGTTCACTTGCTTTGTCCTCTCCAGAGTGTGTGTTTCCTGACCCAAAGTGACACAGTGATCACCAGCATGCCCCAGGCAGCATCTGCTCACCCTGTCCTGGAGATGAACAAGGAGTGCGTCCTTAGCATG---------------GGGAT--AGACACAGAGAGAGAGACCACATTGTCTGCAGGAGTTAGCCGAATGATCTCACAGACCCCACCTGCTGGGCTCTTCCATTTTATCACAATTATTCCACCTGTTCACGTGCAGAGAGAAGAACTCTTGGAGTAGATTTTAAGACCTTAGAGAGTAACTTGTTTACAAATAAAATATCTCTTTGATGATGTATTTGGATTCC----------------------ATGTCATTTTGCCACATTTCTCTCAATTTACTGGACACCAACAATGAGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29611863 786 - 170955103 TCAGGGTGAATCTGTTGTGCcctgggctctggggcctgggtggtggcacagggcatggtcctggggccAACGGCAGGTGATACTAAGGTCGACCCATGAATCTTGATCTTAGTCGAAGTCGACAGGTTTTGCTGAGTGAGGCAGTAGCTGGCAGAACAGGATGGGAGCAAGTGCCCAGGGTGGAGGAATCACAACAGGAAGCGATGGAACCAAAGAGAGCACATCACACATCGGCTCATTTAGCAGAGCGGGAAACAGGTTAAGGTACAGAAGCCCTCTGGCCCctggaaccctcaagtttttatgtttgtgcttcccttgtcttttgtttcaagatattttttaatttttctggtttgattttttGGAAATAAAAGGCCTTCCACTCAGAGTACAAGGTCTGTTCACTTGCTTTGTCCTCTCCAGAGTGTGTGTTTCCTGACCCAAAGTGACACAGTGATCACCAGCATGCCCCAGGCAGCATCTGCTGACCCTGTCCTGGAGATGAACAAGGAGTGCGTCCTTAGCATG---------------GGGAT--AGACACAGAGAGAGAGACCACATTGTCTGCAGGAGTTAGCCGAATGATCTCACAGACCCCACCTGCTGGGCTCTTCCATTTTATCACAATTATTCCACCTGTTCACGTGCAGAGAGAAGAACTCTTGGAGTAGATTTTAAGACCTTAGAGAGTAACTTGTTTACAAATAAAATATCTCTTTGATGATGTATTTGGATTCC----------------------ATGTCATTTTGCCACATTTCTCTTAATTTACTGGACACCAACAATGAGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2655289 810 -   2996164 TCAGGGTGAATCTGTTGTGCCCTGGGCTCTGGGGCCTGGGTGGTGGCACAGGGCATTGTCCTGGGGCCAACGGCAGGTGATACTAAGGTCGACCCATGAATCTTGATCTTAGTCGAAGTCGACAGGTTTTGCTGAGTGAGGCAGTAGCTGGCAGAACAGGATGGGAGCAAGTGCCCAGGGTGGAGGAATCACAACAGGAAGCGATGGAACCAAAGAGAGCACATCACACATCTGCTCATTTAGCAGAGCGGGAAACAGGTTAAGGTACAGAAGCCCTCTGGCCCCTGGAACCCTCAAGTTTTTATGTTTGTGCTTCCCTTGTCTTTTGTTTCAAGATATTTTTTAATTTTTCTGGTTTGATTTTTTGGAAATAAAAGGCCTTCCACTCAGAGTACAAGGTCTGTTCACTTGCTTTGTCCTCTCCAGAGTGTGTGTTTCCTGACCCAAAGTGACACAGTGATCACCAGCATGCCCCAGGCAGCATCTGCTGACCCTGTCCTGGAGATGAACAAGGAGTGCGCCCTTAGCATG---------------GGgatagagagagagagagagagaCCACATTGTCTGCAGGAGTTAGCTGAATGATCTCACAGACCCCACCTGCTGGGCTCTTCCATTTTATCACAATTATTCCACCTGTTCACGTGCAGAGAGAAGAACTCTTGGAGTAGATTTTAAGACCTTAGAGAGTAACTTGTTTACAAATAAAATATCTCTTTGATGATGTATTTGGATTCATGTATTTGGATGATGTATTTGGATGTCATTTTGCCACATTTCTCTTAATTTACTGGACACCAACAATGAGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     407097 801 +    766320 TCAGGGTGAATCTGctgtgccctgggctctggggcctgggtggtggcacagggcatggtcctggggccAATGGCAGGTGGTACTAAGGTCGACCTATGCATCTTGACTTTAGTCGAAGTCGACAGGTTTTGCTGAGTGAGGCAGTAGCCGGCAGTACAGGATGGGAGCAAGTGTCCAGGGTGGAGGAATCACAATAGGAAGCGATGGGACCAAAGAGAGCACATCACACATCTGCTCATTTAGCAGAGCAGGAAGCAGGTTAAGGTACAGAAGCCCTCTGGCCCCTGGAACCCTCAAGTTTTTATGTTTGTGTTTCCCTTGTCTTTAGTTTCAAGGTATTTTTTAATTTTTCTGGTTTGAGTTTTTGGAGATAAAAGGCCTTCCACTCAGAGTACAAGGTCTGTTCACTTGCTTTGTCCTCTCCAGAGTGTGTGTTTCCTGACCCAAAGTGACACAGTGATCACCAGCATGCCCCAGGCAGCATCTGCTGACTCTGTCCTGGAGATGAACAAGGAGTGCGCCCTTAGCATgagatagagagagagagagag--agagagagagagagagaCCACATTGTCTGCAGGAGTTAGCTGAATGATCTCACAGACCCCACCTGCCGGGCTCTTCCATTTTATCACAATTATTCCACCTGTTCACGTGCAGAGAGAAGAACTCTTGGAGTAGATTTTAAGGCCTTAGAGAGTAACTTGTTTATAAATAAAATATCTCTTTGATGACGTATTTGGATTCC----------------------ATGTGATTTTGCCACATTTCTCTTAATTTACTGGACACCAACAATGACAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28864862 784 -  71996105 TCAGGGTGAATCTGctgtgccctgggctctggggcctgggtggtggcacagggcatggtcctggggccAACGGCAGGTGGTACTAAGGTCGACCTATGAATCTTGACTTTAGTCGAAGTCGACAGGTTTTGCTGAGTGAGGCAGTAGCCGGCAGAACAGGATGGGAGCAAGTGCCCAGGGTGGAGGAATCACAATAGGAAACGATGGGACCAAAGAGAGCACATCACACATCTGCTCATTTAGCAGAGCAGGAAGCAGGTTAAGGTACAGAAGCCCTCTGGCCCCTGGAACCCTCAAGTTTTTATGTTTGTGTTTCCCTTGTCTTTAGTTTCAAGGTATTTTTTAATTTTTCTGGTTTGATTTTTTGGAGATAAAAGGCCTTCCACTCAGAGTACAAAGTCTGTTCACTTGCTTTGTCCTCTCCAGAGTGTGTGTTTCCTGACCCAAAGTGACACAGTGATCACCAGCATGCCCCAGGCAGCATCTGCTGACCCTGTCCTGGAGATGAACAAGGAGTGCGCCCTTAGCATG-----------------GGG--ATAGAGAGAGAGGGAGATCACATTGTCTGCAGGAGTTAACTGAATGATCTCACAGACCCCACCTGCTGGGCTCTTCCATTTTATCACAATTATTCCACCTGTTCACGTGCAGAGAGAAGAACTCTTGGAGTAGATTTTAAGACCTTAGAGAGTAACTTTTTTACAAATCAAATATCTCTTTGATGACGTATTTGGATTCC----------------------ATGTCATTTTGCCACATTTCTCTTAATTCACTGGACACCAACAATGAGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      35699 801 +    290775 TCAGGGTGAATCTGctgtgccctgggctctggggcctgggtggtggcacagggcatggtcctggggccAACGGCAGGTGATACTATGGTCGACCCATGAATCTTGACCTTAGTCGAAGTCGACAGGTTTTGCTGAGTGAGGCAGTAGCCGGCAGAACAGGATGGGAGCAAATGCCCAGGGTGGAGGAATCACAACAGGAAGCGATGGGACCAAAGAGAGCACATCACACATCTGCTCATTTAGCAGGACAGGAAACAGGTTAAGGTACAGAAGCCCTCTGGCCCCTGGAACCCTCAAGTTTTTATGTTTGTGTTTCCCTTGTCTTTTGTTTCAAGATATTTTTTAATTTTTCTGGTTTGATTTTTTGGAGATAAAAGGCCTTCCACTCAGAGTACAAGGTCTGTTCACTTGCTTTGTCCTCTCCAGAGTGTGTGTTTCCTGACCCAAAGTGACACAGTGATCACCAGCATGCCCCAGGCAGCATCTGCTGACCCTGTCCTGGACATGAACAAGGAGTGCGCCCTTAGCATgagatagagagagagagagag--agagagagagagagagaCCACATTGTCTGCAGGAGTTAGCTGAATGATCTCACAGACCCCACCTGCCGGGCTCTTCCATTTTATCACAATTATTCCACCTGTTCACGTGCAGAGAGAAGAACTCTTGGAGTAGATTTTAAGATCTTAGAGAGTAACTTGTTTATAAATAAAATATCTCTTTGATGACGTATTTGGATTCC----------------------ATGTGATTTTGCCACATTTCTCTTAATTTACTGGACACCAACAATGACAT
i manLeu1.NW_012099233v1   I 7100 C 0
s colAng1.NW_012115566v1    2469792 782 -   3067355 TCAAGGTGAATCTGCTGTGCCCTGGGCCCTGAGGCCTGGGTGGTGGCACAGGGCATGGTCCTGGGGCCAATGGCAGGTGGTACTATGGTCGACCTGTGAATCTTGACCTTAGTCAAAGTCGACAGGTTTTGCTGAGTGAGACAGCAGCCGGCAGAACAGGATGGGAGTAAGTGCCCAGGGTGGAGGAATCACAATAGGAAGCGATGGGACCAAAGAGAGCACATCACACATCTGCTCATCTAGCAGAGCAGGAAACAGGTTAAGGTACAGAAGCCCTCTGGCCCCTGGAACCCTCAAGTTTTTATGTTTGTGTTTCCCTTGTCTTTTGTTTCAAGATATTTTTTAATTTTTCTGGTTTGATTTTTTGGAGGTAAAAGGCCTTCCACTCAGAGTACAAGGTCTGTTCACTCGCTTTGTCCTCTCCAGAGTGTGTGTTTCCTGACCCAAAGTGACACAGTGGTCACCAGCATGCCCCAGGCAGCATCTGCTGACCCTGTCCTGGAGATGAACAAGGAATGCACCCTTAGTATG---------------GGGAT------AGAGAGAGAGAGACCACATTGTCTGCAGGAGTTAGCTGAATGATCTCACAGACCCCACCTGCTGGGCTCTTCCGTTTTATCACAATTATTCCACCTGTTCACGTGCAGAGAGAAGAACTCTTGGAGTAGATTTTAAGACCTTAGAGAGTAACTTGTTCACAAATAAAATATCTCTTTGATGACGTATTTGGATTCC----------------------ATGTCATTTTGCCACATTTCTCTTAATTTACTGGACACCAACAATGAGAT
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964   0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I

a score=1996174.000000
s hg38.chr6_GL000254v2_alt   775993 359 +   4827813 AAAAGTTAAGATTTTAGGAA----------ATGTAGA----------------AAATTTCTaaataaaaatcaaaa-----aagaaaataaaacaacaaaaTGAAGAGCTGCCTGGGAGAGATGAACCCATGGTCCCCGTCTTCACGCTAAGATGCAAAAGAGCAGAGCTTCCAGCTTCCAACTGGAGCTCCCACACAAAATACTGGGGAAATCTTCCTCCTTCCAACAATGGTCTTCCTATTGATCCTGAGACCTTGCTGGCAACCAGCCGTGTCTCTGCCCCTCTTTCTGTGCTCTCGTGACTCATCCCAGCTTCTCTCTCTGTGCCCCTTTCTTGTTCCCCTCTGCCCATTTCTCTTTTTATCTGAAtccccagatgcccctgcaca
s panTro5.chr6             29748362 359 + 175400573 AAAAGTTAAGATTTTAGGAA----------ATGTAGA----------------AAATTTCTaaataaaaatcaaaa-----aagaaaataaaacaacaaaaTGAAGAGCTGCCGGGGAGAGATGAACCCATGGTCCCCGTCTTCACGCTAAGATGCAAAAGAGCAGAGCTTCCAGCTTCCAACTGGAGCTCCCACACAAAATACTGGGGAAATCTTCCTTCTTCCAACAATGGTCTTCCTATTGATCCTGAGACGTTGCTGGCAACCAGCCGTGTCTCTGCCCCTCTTTCTGTGCTCTCGTGACTCATCCCAGCTTCTCTCTCTGTGCCCCTTTCTTGTTCCCCTCTGCCCATTTCTCTTTTTATCTGAAtccccagatgcccctgcaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29978092 359 + 173848474 AAAAGTTAAGATTTTAGGAA----------ATGTAGA----------------AAATTTCTaaataaaaatcaaaa-----aagaaaataaaacaacaaaaTGAAGAGCTGCCGGGGAGAGATGAACCCATGGTCCCCGTCTTCACGCTAAGATGCAAAAGAGCAGAGCTTCCAGCTTCCAACTGGAGCTCCCACACAAAATACTGGGGAAATCTTCCTTCTTCCAACAATGGTCTTCCTATTGATCCTGAGACCTTGCTGGCAACCAGCCGTGTCTCTGCCCCTCTTTCTGTGCTCTCGTGACTCATCCCAGCTTCTCTCTCTGTGCCCCTTTCTTGTTCCCCTCTGCCCATTTCTCTTTTTATCtgaatccccagatgcccctgcaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5789683 359 +   6154872 AAAAGTTAAGATTTTAGGAA----------ATGTAGA----------------AAATTTCTAAATAAGAATCAAAA-----AAGAAAATAAAACAACAAAATGAAGAGCTGCCTGGGAGAGATGAACCCATGGTCCCTGTCTTCACGCTAAGATGCAAAAGAGCAGAGCTTCCAGCTTCCAACTGGAGCTCCCACACAAAATACTGGGGAAATCTTCCTCCTTCCAACAATGGACTTCCTATTGATCCTGAGACCTTGCTGGCAACCAGCCGTGTCTTTGCCCCTCTTTCTGTGCTCTCGTGACTCATCCCAGCTTCTCTCTCTGTGCCCCTTTCTTGTTCCCCTCTGCCCATTTCTCTCTTTATCTGAATTCCCAGATGCCCCTGCACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74483874 359 + 122973662 AAAAATTAAGATTTTAGGAA----------ATGTAGA----------------AAATTTCTGAATAAGAATCAAAA-----AAGAAAATAAAACAACAAAATGAAGAGCTGCCTGGGAGAGATGAACCCATGGTCCCTGTCTTCACGCTAAGATGCAAAAGAGCAGAGCTTCCAGCTTCCAACTGGAGCTCCCACACAAAATACTGGGGAAATCTTCCTCCTTCCAACAACAGTCTTCCTATTGGTCCTGAGACCTTGCTGGCAACCAGCCGTGTCTCTGCCCCTCTTTCTGTGCTCCCGTGACTCATCCCAGCTTCTCTCTGTGTGCCCCTTTCTTGTTCCCCTCTGCCCATTTCTCTCTTCATCtgaatcccctgatgcccctgcaca
i nomLeu3.chr1a            I 647 C 0
s rheMac8.chr4             29948717 385 + 172585720 AAAAATTAAGATTTTAGAAAATTTCTAAAGATGTAGAAAATTTCTGCTTTAG-AAATTTCTaaataagaatcaaaaa----aataaaataaaacaaCAAAATGAAGAGCAGCCTTTGAGAGATGACCCCTTGGTCCCCGTCCTCACACTAAGACGCCAAAGAGCAGAGCTTCCAGCTTCTCACTGGAGCTCCCACGCAAAATATTGAGAAAATCTTCCTCCCTCCAACAACAGTCTTCCTATTGGTCCTGAGACCTTGCTGGCGATCAGCCGTGTCTCTGCCCCTCTTTCTGTGCTCTTGTGACTCATCCCAGCTTCTCTCTCTGTGCCCCTATTTGGTTCCCCTCTGCCCATTTCTCTCTTTATCtgaatccccagatgaccctgcaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29612649 387 - 170955103 AAAAATTAAGATTTTAGAAAATTTCTAAAGATGTAGAAAATTTCTGCTTTAG-AAATTTCTaaataagaatcaaaaaaa--aataaaataaaacaacaaaaTGAAGAGCAGCCTTTGAGAGATGACCCCTTGGTCCCCGTCCTCACACTAAGACGCCAAAGAGCAGAGCTTCCAGCTTCTCACTGGAGCTCCCACGCAAAATATTGAGAAAATCTTCCTCCCTCCAACAACAGTCTTCCTATTGGTCCTGAGACCTTGCTGGCGATCAGCCGTGTCTCTGCCCCTCTTTCTGTGCTCTTGTGACTCATCCCAGCTTCTCTCTCTGTGCCCCTATCTGGTTCCCCTCTGCCCATTTCTCTCTTTATCtgaatccccagatgaccctgcaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2656099 390 -   2996164 AAAAATTAAGATTTTAGAAAATTTCTAAAGATGTAGAAAATTTCTGCTTTAGAAAATTTCtaaataagaatcaaaaaaaataaataaataaaacaacaaaATGAAGAGCAGCCTTTGAGAGATGACCCCTTGGTCCCCGTCCTCACACTAAGACGCAAAAGAGCAGAGCTTCCAGCTTCTCACTGGAGCTCCCACGCAAAATATTGAGAAAATCTTCCTCCCTCCAACAACAGTCTTCCTATTGGTCCTGAGACCTTGCTGGCGATCAGCCGTGTCTCTGCCCCTCTTTCTGTGCTCTTGTGACTCATCCCAGCTTCTCTCTCTGTGCCCCTATCTGGTTCCCCTCTGCCCATTTCTCTCTTTATCtgaatccccagatgaccctgcaca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     407898 385 +    766320 AAAAATTAAGATTTTAGAAAATTTCTAAAGATGTAGAAAATTTCTGCTTTAGAAAATTTCTAAATAAGAATCAAAA-----AAGAAAATAAAACAACAAAATGAAGAGCAGCCTTTGAGAGATGACCCCTTGGTCCCCGTCCTCACACTAAGACGCAAAAGAGCAGAACTTCCAGCTTCTCACTGGAGCTCCCACGCAAAATATTGAGAAAATCTTCCTCCCTCCAACAACAGTCTTCCTATTGGTCCTGAAACCTTGCTGGCAATCAGCCGTGTCTCTGCCCCTCTTTCTGTGCTCTTGTGACTCATTCCAGCTTCTCTCCCTGTGCCCCTATCTGGTTCCCCTCTGCCCATTTCTCTCTTTATCtgaatccccagatgaccctgcaca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28865646 375 -  71996105 AAAAATTAAGATTTTAGGAA----------CTGTAGAAAATTTCTAATTTAGAAAATTTCTAAATAAGAATCAAAA-----AAGAAAATAAAACAACAAAATGAAGAGCTGCCTTTGAGAGATGACCCCTTGGTCCCCGTCCTCACACTAAGACGCAAAAGAGCAGAGCTTCCAGCTTCTCGCTGGAGCTCCCACACAAAATATTGAGGAAATCTTCCTCCCTCCAACAACAGTCTTCCTACTGGTCCTGAGACCTTGCTGGCAATCAGCCGTGTCTCTGCCCCTCTTTCTGTGCTCTTGTGACTCATCCCAGCTTCTCTCTCTGTGCCCCTATCTGGTTCCCCTCTGCCCATTTCCCTCTTTATCtgaatccccagatgaccctgcaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      36500 385 +    290775 AAAAATTAAGATTTTAGAAAATTTCTAAAGATGTAGAAAATTTCTGCTTTAGAAAATTTCTAAATAAGAATCAAAA-----AAGAAAATAAAACAACAAAATGAAGAGCAGCCTTTGAGAGATGACCCCTTGGTCCCCGTCCTCACACTAAGACGCAAAAGAGCAGAGCTTCCAGCTTCTCACTGGAGCTCCCACGCAAAATATTGAGAAAATCTTCCTCCCTCCAACAACAGTCTTCCTATTGGTCCTGAGACCTTGCTGGCAATCAGCCGTGTCTCTGCCCCTCTTTCTGTGCTCTTGTGACTCATCCCAGCTTCTCTCCCTGTGCCCCTATCTGGTTCCCCTCTGCCCATTTCTCTCTTTATCtgaatccccagatgaccctgcaca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2470574 371 -   3067355 AAAAATTAAGATTTTAGGAA----------ATGTAGAAAATTTCTAATTTAGAAAATTTCTAAATAAGAATCAAAA---------AAAAACAACAACAAAATGAAGAGCTGCCTTTGAGAGATGACCCCTTGGTCCCCGTCCTCACACTAAGATGCAAAAGAGCAGAGCTTCCAGCTTCTCACTGGAGCTCCCACACAAAATATTGAGGAAATCTTCCTCCCTCCAACAACAGTCTTCCTATTGGTTCTGAGACCTTGCTGGCAATCAGCCATGTCTCTGCCCTTCTTTCTGTCCTCTTGTGACTCATCCCAGCTTCTCTCTCTGTGCCCCTATCTGGTTCCCCTCTGCCCATTTCTCTCTTTATCtgaatccccagatgaccctgcaca
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964   0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I

a score=2783680.000000
s hg38.chr6_GL000254v2_alt   776352 572 +   4827813 atctgagtgtgcagagtggcccagccctccctaggaagggaaagcactggccccttgcttggagagaaggcagagactgctctcccacaagactgtagtgccctaaaaccccctgatcagctcacaccttgtttcctggtggccaggccaatgatgaggttcaccacagcctacctcagccagggaccttatgacttaataggggaagagccacagaatatagccacatatatgggcagaagtcctgagatatccatggggctggatactaaagggtctccatttccaagtagaacctaaggttagatgagagaggtttattatcaatgcaggaggatcctcacaggatacaggatttaacagcctaacagggattccagaagatagttcaaatcagattcaaggtaagctcctgtaagtatggaaaaagtgacaactcCCCACGAAAGACAGAGGTGAGAAGGCTCAGAGAAGTGGATATGCTGGGGTGGATACACTCTGTAAATCCAGAAAAATCTACCTGCTGCCTATTTTTCAATTGTTCAATTTGCCTGTTAAATCATCTGGGCCTG
s panTro5.chr6             29748721 572 + 175400573 atctgagtgtgcagagtggcccagccctccctaggaagggaaagcactggcctcttgcttggagagaaggcagagactgctctcccacaagactgtagtgccctaaaaccccctgatcagctcacaccttgtttcctggtggccaggccaatgatgaggttcaccacagcctacctcagccagggaccttatgacttaataggggaagagccacagaatatagccacatatatgggcagaagtcctgagatatccatggggctggatactaaagggtctccatttccaagtagaacctaaggttagatgagagaggtttattatcaatgcaggaggatcctcacaggatacaggatttaacagcctaacagggattccagaagatagttcaaatcagattcaaggtaagctcctgtaagtatggaaaaagtgacaactcCCCACGAAAGACAGAGGTGAGAAGGCTCAGAGAAGTGGATGTGCTGGGGTGGATACACTCTGTAAATCCAGAAAAATCTACCTGCTGCCTATTTTTCAATTGTTCAATTTGCCTGTTAAATCATCTGGGCCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29978451 572 + 173848474 atctgagtgtgcagagtggcccagccctccctaggaagggaaagcactggcctcttgcttggagagaaggcagagactgctctcccacaagactgtagtgccctaaaaccccctgatcagctcacaccttgtttcctggtggccaggccaatgatgaggttcaccacagcctacctcagccagggaccttatgacttaataggggaagagccacagaatatagccacatatatgggcagaagtcctgagatatccatggggctggatactaaagggtctccatttccaagtagaacctaaggttagatgagagaggtttattatcaatgcaggaggatcctcacaggatacaggatttaacagcctaacagggattccagaagatagttcaaatcagattcaaggtaagctcctgtaagtatggaaaaagtgacaactcCCCACGAAAGACAGAGGTGAGAAGGCTCAGAGAAGTGGATGTGCTGGGGTGGATACACTCTGTAAATCCAGAAAAATCTACCTGCTGCCTATTTTTCAATTGTTCAATTTGCCTGTTAAATCATCTGGGCCTG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74484233 572 + 122973662 atctgagtgtgcagagaggcccagccctccctaggaagggaaagcactgtccccttgcttggagagaaggcagagactgctctcccacaagactgtagtgtcctcaaaccccctgatcagctcacaccttgtttcctggtggccaggccgatgatgaggttcaccacagcctatctcagccagggaccttatgacttaataggggaagagccacagaatatagccacatatatgggcagaagtcctgagatatccgtggggctagatactaaagggtctccacttccaagtagaacctaaggttagatgagagaggtttaacatcaatgcaggaggatcctcacaggatacaggatttaacatgctaacagggattccagaagatagttcaaatcagattcgaggtaagctcctgtaagtatggaaaaagtgacaactccccacgaaagatagaggtgagaaggctcagagaagtggatatgctggggtggatacactctgtaaatccagaaaaatccaccTGCTGCCTATTTTTCAATTGTTCAATTTGCCTGTTAAATCATCTGGGCCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29949102 572 + 172585720 atctgagtgtgctgagtggtccagtcccccctgggaagggaaagcactgtccccttctttggagagaaggcagagactgctctcccacaagaccgtagtgcccccaagcccctggatcagctcacaccttgttttctggtggccaggccaatgatgaggttcaccacagcctacctcagccagggatcttatgacttaatagaggaagagccacagaatatagccgcatgtatgggcagaagtcctgagatatccgtggggctggatactaaagggtctccatttccaggtagaacctaaggttagatgagagaggtttatcatcaatgcaggaggatcctcacaacacacaggatttaacagccttacagggattccaaaagatagtacaaatcagattcgaggtaagctcctgtaaatatggaaaaagtgacaactcTCCACAAAAGACAGAGGTGAGACGGCTCAGAGAATTGGATATGCTGGGGTGGATATACTCTGTAAATCCAGAAAAATCCACCTGCTGCCTATTTTTCAATTGTTCAGTTTGCCTGTTAAATCATCTGGGCCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29613036 572 - 170955103 atctgagtgtgctgagtggtccagtcctccctgggaagggaaagcactgtccccttctttggagagaaggcacagactgctctcccacaagaccgtagtgcccccaagcccctggatcagctcacaccttgttttctggtggccaggccaatgatgaggttcaccacagcctacctcagccagggatcttatgacttaatagaggaagagccacagaatatagccgcatgtatgggcagaagtcctgagatatccgtggggctggatactaaagggtctccatttccaggtagaacctaaggttagatgagagaggtttatcatcaatgcaggaggatcctcacaacacacaggatttaacagccttacagggattccaaaagatagtacaaatcagattcgaggtaagctcctgtaaatatggaaaaagtgacaactctccacaaaagacagaggtgagaaggctcagagaattggatatgctggggtggatatactctgtaaatccagaaaaatccaccTGCTGCCTATTTTTCAATTGTTCAGTTTGCCTGTTAAATCATCTGGGCCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2656489 572 -   2996164 atctgagtgtgctgagtggtccagtcctccctgggaagggaaagcactgtccccttctttggagagaaggcagagactgctctcccacaagaccgtagtgcccccaagcccctggatcagctcacaccttgttttctggtggccaggccaatgatgaggttcaccacagcctacctcagccagggatcttatgacttaatagaggaagagccacagaatatagccgcatgtatgggcagaagtcctgagatatccgtggggctggatactaaagggtctccatttccaggtagaacctaaggttagatgagataggtttatcatcaatgcaggaggatcctcacaacacacaggatttaacagccttacagggattccaaaagatagtacaaatcagatttgaggtaaactcctgtaaatatggaaaaagtgacaactcTCCACAAAAGACAGAGGTGAGAAGGCTCAGAGAATTGGATATGCTGGGGTGGATATACTCTGTAAATCCAGAAAAATCCACCTGCTGCCTATTTTTCAATTGTTCAGTTTGCCTGTTAAATCATCTGGGCCTG
i macNem1.NW_012011356v1   C 0 I 223
s cerAty1.NW_012002711v1     408283 572 +    766320 atctgagtgtgctgagtggtccagtcctccccgggaagggaaagcacagtccccttgcttggagaggaggcagagactgctctcccacaagaccgtagtgcccccaaacccccggatcagctcacactttgttttctggtggccaggccaatgatgaggttcaccacagcctacctcagccagggatcttatgacttaataggggaagagccacagaatatagccacatgtgtgggcagaagtcctgagatatccatggggctggatactaaagggtcttcatttccaggtagaacctaaggttagatgagagaggtttatcatcaatgcaggaggatcctcacaggatacaggatttaacagccttacagggattccaaaagatagtacaaatcagattcgaggtaagttcctgtaaatatggaaaaagtgacaactcTCCGCGAAAGTCAGAGGTGAGAAGGCTCAGAGAATTGGATATGCTGGGGTGGATGTACTCTGTAAATCCAGAAAAATCCACCTGCTGCCTATTTTTCAATTGTTCAATTTGCCTGTTAAATCATCTGGGCCTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28866021 572 -  71996105 atctgagtgtgcagagtggcccagtcctccctgggaagggaaagcactgtccccttgcttggagagaaggcagagactgctctcccacaagactgtagtgcccccaaacccctggatcagctcacaccttattttctcgtggccaggccaatgatgaggttcaccacagcctacctcagccagggatcttatgacttaacaggggaagagccacagaatatagccacatgtgtgggcagaagtcctgagatatccatggggctggatactaaagggtctccatttccaggtagaacctaaggttagatgagagaggtttatcatcaatgcaggaggatcctcacaggatacaggatttaacagccttacagggattccaaaagatagtacaaatcagattcgaggtaagctcctgtaaatatggaaaaagtgacaactctccatgaaagacagaggtgagaaggctcagagaactggatatgctggggtggatatactctgtaaatacagaaaaatccaccTGCTGCCTATTTTTCAATTGTTCAATTTGCCTGTTAAATCATCTGGGCCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      36885 572 +    290775 atctgagtgtgctgagtggtccagtcctccccgggaagggaaagcacggtccccttccttggagagaaggcagagactgctctcccacaagaccatagcgcccccaaatccccggatcagctcacaccttgttttctggtggccaggccaatgatgaggttcaccacagcctacctcagccagggatcttatgacttaatagaggaagagccacagaatatagccacatgtatgggcagaagtcctgagatatccatggggctggatactaaagggtctccatttccaggtagaacctaaggttagatgagagaggtttatcatcaatgcaggaggatcctcacaacatacaggatttaacagccttacagggattccaaaagatagtacaaatcagattcgaggtaagctcctgtaaatatggaaaaagtgacaactcTCCACGAAAGACAGAGGTGAGAAGGCTCAGAGAATTGGATATGCTGGGGTGGATATACTCTGTAAATCCAGAAAAATCCACCTGCTGCCTATTTTTCAATTGTTCAATTTGCCTGTTAAATCATCTGGGCCTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2470945 572 -   3067355 atctgagtgtgctcagtggcccagtcctccctgggaagggaaagcactgtccctttccttggagagaaggcagagactgctcttccacaagaccgtagtgcccccaaacccccggatcagctcacaccttgttttctggtggccaggccaatgatgaggttcaccacagcctacctcagccagggatcttatgacttaataggggaagagccacagaatatagccacatgtatgggcagaagtcctgagatatccatggggctggatactaaagggtctccatttccaggtagaacctaaggttagatgagagaggtttatcatcaatgcagtaggatcctcacaggatacaggatttaacagccttacagggattctaaaagatagtacaaatcagattcgaggtaagctcctgtaaatatggaaaaagtgacaactcTCCGCGAAAGACAGAGGTGAGAAGGCTCAGAGAATTGGATATGCTGGGGTGGATATACTCTGTAAATCCAGAAAAATCCACCTGCTGCCTATTTTTCAATTGTTCAATTTGCCTGTTAAATCATCTGGACCTG
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964   0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e gorGor5.CYUI01015250v1    5790042   0 +   6154872 C

a score=42774.000000
s hg38.chr6_GL000254v2_alt   776924 11 +   4827813 GTCATGCTAAA
s panTro5.chr6             29749293 11 + 175400573 GTCATGCTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29979023 11 + 173848474 GTCATGCTAAA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74484805 11 + 122973662 GTCACGCTAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29949674 11 + 172585720 GTCATGCTGAA
i rheMac8.chr4             C 0 I 231
s macFas5.chr4             29613608 11 - 170955103 GTCATGCTGAA
i macFas5.chr4             C 0 I 231
s cerAty1.NW_012002711v1     408855 11 +    766320 GTCATGCTGAA
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17            28866593 11 -  71996105 GTCATGCTGAA
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012099233v1      37457 11 +    290775 GTCATGCTGAA
i manLeu1.NW_012099233v1   C 0 I 1
s colAng1.NW_012115566v1    2471517 11 -   3067355 GTCATGCTGAA
i colAng1.NW_012115566v1   C 0 I 1
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964  0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e macNem1.NW_012011356v1    2657061 223 -   2996164 I
e gorGor5.CYUI01015250v1    5790042  0 +   6154872 C

a score=4095.000000
s hg38.chr6_GL000254v2_alt   776935 1 +   4827813 T
s panTro5.chr6             29749304 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29979034 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74484816 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29949916 1 + 172585720 T
i rheMac8.chr4             I 231 C 0
s macFas5.chr4             29613850 1 - 170955103 T
i macFas5.chr4             I 231 C 0
s cerAty1.NW_012002711v1     408867 1 +    766320 T
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17            28866605 1 -  71996105 T
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012099233v1      37469 1 +    290775 T
i manLeu1.NW_012099233v1   I 1 C 0
s colAng1.NW_012115566v1    2471529 1 -   3067355 T
i colAng1.NW_012115566v1   I 1 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964 0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e macNem1.NW_012011356v1    2657061 223 -   2996164 I
e gorGor5.CYUI01015250v1    5790042 0 +   6154872 C

a score=6139707.000000
s hg38.chr6_GL000254v2_alt   776936 1298 +   4827813 TTTTTTAACTACCAATTTTGATTTACTTAATGATTGTAAATCTGGTTTATCCATTTCTTCTG-TTTTTTAATTCACTCTGCATTGATATTTATACTACAACTCTCCAAACACTATTTCACAAATCAAGCTTCTATAGCAAAAGTAGGAAAACGTTTTAAGAAATTTTATTTTACCTTGTCAATGACCAAA-AACACACAAGACTGGCATCCTCACCCAATTTCTCTAGACTTTGTTTCTGGGATC-ATCAGCTATCACATGTtg-tattagtccgttctcacgctgctataagacagcctaagactgggtaatttataaaggaaagaggtttaattgactcccaggtctgcagggctggagtggccccagaaaacttacaatgccagcagaaggggaagcaaacaccttcttctttacatggtgtcagcaaggagaagggcagagtgaaaggggacagggggaagccccttttaaaaaaccatcagatctgataacaattcactatcacaagaacagcatggaggcaacctcccccatggttcaattacttcccaccaggtccctcccacaacatgtggggattatgggaacaacaattcaggatgagatttgggt-gggacacagccaaaccatatcaCATGTCTTCAATTTCTGCCTCCTAAAAATGACATCTTTgccaggtgtggtggcgcacacctgtaatctcagcagtttagaaggctgaggcaggtgaatcacttgaggtcaggagtttgagaccagcctgaccaacatggtgaaaccccatctctactaaaaacacaaaaaacttagcctggtatggtggtgtgcacctgtagtcccagctactcaggaggctgaggcaggagaattgcttgaacccaggaggtagaggttgcagtgagctgatatcacatcactgcactccagcctgggtgacacagcgagactccatctcaaaaaacaaaacaaaacaaaaaaaTGACATGCTCAACCTTGGTCTTTCCTCAACTGTCAACTCTGAGTGCTAAGAACCTAAAAGATATCTCTGCTTTACTGCACAGCAAGGTCTTtgttgtgagttgggttgtgtcctctcaaaatttgtatattgaagttctaacccccagtatctcagaatgtgactttctttggaaatagtgtctttatagaattaaaatgagatcattagggtgggccctaagaggatattagggcacggacactcacagagggacaactgtgtgaagacacagggagaagacagttatctacaaaccaacaagagaggcctcagaaga
s panTro5.chr6             29749305 1298 + 175400573 TTTTTTAACTACCAATTTTGATTTACTTAATGATTGTAAATCTGGTTTATCCATTTCTTCTG-TTTTTTAATTCACTGTGCATTGATATTTATACTACAACTCTCCAAACACTATTTCACAAATCAAGCTTCTATAGCAAAAGTAGGAAAACGTTTTAAGAAATTTTATTTTACCTTGTCAATGACCAAA-AACACACAAGACTGGCATCCTCACCCAATTTCTCTAGACTTTGTTTCTGGGATC-ATCAGCTATCACATGTtg-tattagtccgttctcacgctgctataagacagcctaagactgggtaatttataaaggaaagaggtttaattgactcccaggtctgcagggctggagtggccccagaaaacttacaatgccagcagaaggggaagcaaacacctccttctttacatggtgtcagcaaggagaagtgcagagtgaaaggggacagggggaagccctttttaaaaaaccatcagatctgataacaattcactatcacaagaacagcatggaggtaacctcccccatggttcaattacttcccaccaggtccctcccacaacatgtgcggattatgggaacaacaattcaggatgagatttgggt-gggacacagccaaaccatatcaCATGTCTTCAATTTCTGCCTCCTAAAAATGACATCTTTgccaggtgtggtggcgcacacctgtaatctcagcagtttagaaggctgaggcaggtgaatcacttgaggtcaggagtttgagaccagcctgaccaacatggtgaaaccccatctctactaaaaacacaaaaaacttagcctggtatggtggtgtgcacctgtagtcccagctactcaggaggctgaggcaggagaattgcttgaacccaggaggtagaggttgcagtgagctgctaccacatcactgcactccagcctgggtgacacagcgagactccatctcaaaaaacaaaacaaaacaaaaaaaTGACATGCTCAACCTTGGTCTTTCCTCAACTGTCAACTCTGAGTGCTAAGAACCTAAAAGATATCTCTGCTTTACTACACAGCAAGGTCTTtgttgtgagttgggttgtgtcctctcaaaatttgtatattgacgttctaacccccagtatctcagaatgtgactttctttggaaatagtgtctttatagaattaaaatgagatcattagggtgggccctaagaggatattagggcatggacactcacagagggacaactgtgtgaagacacagggagaagacggttatctacaagccaacaagagaggcctcagaaga
i panTro5.chr6             C 0 I 2
s panPan2.chr6             29979035 1298 + 173848474 TTTTTTAACTACCAATTTTGATTTACTTAATGATTGTAAATCTGGTTTATCCATTTCTTCTG-TTTTTTAATTCACTCTGCATTGATATTTATACTACAACTCTCCAAACACTATTTCACAAATCAAGCTTCTATAGCAAAAGTAGGAAAACGTTTTAAGAAATTTTATTTTACCTTGTCAATGACCAAA-AACACACAAGACTGGCATCCTCACCCAACTTCTCTAGACTTTGTTTCTGGGATC-ATCAGCTATCACATGTtg-tattagtccgttctcacgctgctataagacagcctaagactgggtaatttataaaggaaagaggtttaattgactcccaggtctgcagggctggagtggccccagaaaacttacaatgccagcagaaggggaagcaaacacctccttctttacatggtgtcagcaaggagaagtgcagagtgaaaggggacagggggaagccccttttaaaaaaccatcagatctgataacaattcactatcacaagaacagcatggaggtaacctcccccatggttcaattacttcccaccaggtccctcccacaacatgtggggattatgggaacaacaattcaggatgagatttgggt-gggacacagccaaaccatatcaCATGTCTTCAATTTCTGCCTCCTAAAAATGACATCTTTgccaggtgtggtggcgcacacctgtaatctcagcagtttagaaggctgaggcaggtgaatcacttgaggtcaggagtttgagaccagcctgaccaacatggtgaaaccccatctctactaaaaacacaaaaaacttagcctggtatggtggtgtgcacctgtagtcccagctactcaggaggctgaggcaggagaattgcttgaacccaggaggtagaggttgcagtgagctgatatcacatcactgcactccagcctgggtgacacagcgagactccatctcaaaaaacaaaacaaaacaaaaaaaTGACATGCTCAACCTTGGTCTTTCCTCAACTGTCAACTCTGAGTGCTAAGAACCTAAAAGATATCTCTGCTTTACTACACAGCAAGGTCTTtgttgtgagttgggttgtgtcctctcaaaatttgtatattgacgttctaacccccagtatctcagaatgtgactttctttggaaatagtgtctttatagaattaaaatgagatcattagggtgggccctaagaggatattagggcacggacactcacagagggacaactgtgtgaagacacagggagaagacggttatctacaagccaacaagagaggcctcagaaga
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74484817 1299 + 122973662 TTTTTTAACTACCAATTTTGATTTACTTAATGATTGTAAATCTAGTTTATCCATTTCTTCTGTTTTTTTAAATCACTGTGCATTGATATTTATACTACAACTCTCCAAACACTATTTCACAAATCAAGCTTTTACAGCAAAAGTAGGAAAACGTCTTAAGAAATTTTATTTTACCTTGTCAAAGACCAAA-AACACACAAGACTGGCATCCTCACCCAATTTCTCTAGACTTTGTTTCTGGGATCAATCAGCTATCACATGTtg-tattagtcctttctcacgctgctataagacagcctgagactgggtaatttataaaggaaagaggtttaattgactcccaggtctgcagggctggagtggccccagaaaacttacaatgccagcagaaggggaagcaaacacttccttctttacatggtgtcagcaaggagaagtgcatagtgaaggggggcagggggaagccccttttaaaaaaccatcagatctgataacaattcactatcacaagaacagcatggaggtaacctcccccatggttcaattacttcccaccaggtccttcccacgacacgtggggattctgggaactacaattcaagatgagatttgggt-gagacacagccaaaccatatcaCATGTCTTCAATTTCTGCCTCCTAAAAATGACATCTTTgccaggtgtggtggctcacacctgtaatctcagcagtttagaaggctgaggcaggtgaatcacttgaggtcaggagtttgataccagcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaaacttagcttagtgtggtggtgcacacctgtagtcccagctactcaggaggctgaggcaggagaattgcttgaacccatgaggtggaggctgcagtgagccaagatcacatcactgcactccagcctgggtgacacagcgtgactccatctcagaaaacaaaacaaaac-aaaaaaTGACATGTTCAACCTTGGTCTTTCCTCAACTGTCAACTCTGACTGCTAAGAACCTAAAAGATATCTCTGCTTTACTGCACAGCAAGGTCTTtgttgtgagttgggttgtgtcctctcaaaatatgtatattgaagttctaaaccccagtatctcagaatgtgactttctttggaaatagcgtctttatagaattaaaatgagatcattagggtgggccctaagaggatattaggacacagacactcacagagggacaaccgtgtgaagacacagggagaatacggttatctacaagccaacaagagaggccacagaaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29949917 1299 + 172585720 TTTTTTAACTACCAATTTTGATTTGCTTAGTGATTGTAAATCTGGTTTATCCACTTCTTCTG-TTTTTTAATTCACTCTGCATTGATAGTTATACTACAACTCTCCAAACACTATTTCACAAATCAAGCTTTTACAGCAAAAGTAGGAAAATGTTTTAAGATATTTTATTTTACCTTGTCAATGACCAAAAAACACACAAGACTGGCATCTTCACCCAATTTCTCTAGACTTTGTTTCTGGGATCAATCAGCTGTCACACGTTGTtattagtccattctcacactgctataagacaacctgagatggggtaacttataaaggaaagaggtttaattgacttccaggtctgtagagctggagtggcctcagaaaacttacaatgccagcggaaggggaagcaaacacctccttctttacatggcgtcagcaaggataagtgcagagtgaagggggacagagggaggcccc--ttaaaaaaacatcagatctgataagaattcactatcacaagaacagcatggaggtaactgcccgcatgattcaattacttcccaccagctccctcccatgacacatgggaattatgggaactacaattcaagatgagatttgggtggggacacagccaaaccatatcaCATGTCTTCAATTTCTGCCTCCTAAAAATGACATCTTTgccaggtgtggtggctcacacctgtaatcccagcacttcagaaggctgaggcaggtgaatcacttgaggtcaggggtttgagaccagcctgaccaatatagtgaaaccccatctctactaaaaatacaaaaaagttagcctggtgtggtggtgcacacctgtagtcccagctacacaggaggctgaggcaggagaattgcttgaacccaagaggcggaggtgacagtgagccgagatcacatcactgcactccagcctgggtgacacagtgagattccacctcaaaaaacaaaacaaaac-aaaaaaCGACATGCTCAATCTTGGTCTTTCCTCAACTGTCAACTCTGACTGCTAAGAACCTAAAAGATATCTCCGCTTTACTGCACAGCAAGGTCTTtgttgtgagttgggttgtgtcctctcaaaatttatatattcaagttctaacccccagtatctcagaaggtaactttctttggaaatagcgtctttatagaattaaaatgagatcattagggtgggctctaagaggatattaggacacagacactcacagagggacaatcgtgtgaagacacagggagaagacgcttatctacaagccagcaagagaggcctcagaaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29613851 1299 - 170955103 TTTTTTAACTACCAATTTTGATTTGCTTAGTGATTGTAAATCTGGTTTATCCACTTCTTCTG-TTTTTTAATTCACTCTGCATTGATAGTTATACTACAACTCTCCAAACACTATTTCACAAATCAAGCTTTTACAGCAAAAGTAGGAAAATGTTTTAAGATATTTTATTTTACCTTGTCAATGACCAAAAAACACACAAGACTGGCATCTTCACCCAATTTCTCTAGACTTTGTTTCTGGGATCAATCAGCTGTCACACGTTGTtattagtccattctcacactgctataagacaacctgagatggggtaatttacaaaggaaagaggtttaattgacttccaggtctgtagagctggagtggcctcagaaaacttacaatgccagcggaaggggaagcaaacacctccttctttacatggcgtcagcaaggataagtgcagagtgaagggggacagagggaagcccc--ttaaaaaaacatcagatctgataagaattcactatcacaagaacagcatggaggtaactgcccgcatgattcaattacttcccaccaggtccctcccatgacacatgggaattatgggaactacaattcaagatgagatttgggtggggacacagccaaaccatatcaCATGTCTTCAATTTCTGCCTCCTAAAAATGACATCTTTgccaggtgtggtggctcacacctgtaatcccagcacttcagaaggctgaggcaggtgaatcacttgaggtcaggggtttgagaccagcctgaccaacatagtgaaaccccatctctactaaaaatacaaaaaagttagcctggtgtggtggtgcacacctgtagtcccagctacacaggaggctgaggcagaagaattgcttgaacccaagaggcggaggtggcagtgagccgagatcacatcactgcactccagcctgggtgacacagtgagattccacctcaagaaacaaaacaaaac-aaaaaaCGACATGCTCAATCTTGGTCTTTCCTCAACTGTCAACTCTGACTGCTAAGAACCTAAAAGATATCTCCGCTTTACTGCACAGCAAGGTCTTtgttgtgagttgggttgtgtcctctcaaaatttatatattcaagttctaacccccagtatctcagaaggtaactttctttggaaatagcgtctttatagaattaaaatgagatcattagggtgggctctaagaggatattaggacacagacactcacagagggacaatcgtgtgaagacacagggagaagacgcttatctacaagccagcaagagaggccacagaaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2657284 1297 -   2996164 TTTTTTAACTACCAATTTTGATTTGCCTAGTGATTGT-AATCTGGTTT-TCATTCTGTACTG-TTTTTTAATTCACTCTGCATTGATAGTTATACTACAACTCTCCAAACACTATTTCACAAATCAAGCTTTTACAGCAAAAGTAGGAAAATGTTTTAAGATATTTTATTTTACCTTGTCAATGACCAAAAAACACACAAGACTGGCATCTTCACCCAATTTCTCTAGACTTTGTTTCTGGGATCAATCAGCTGTCACACGTTGTtattagtccattctcacactgctataagacaacctgagatggggtaatttataaaggaaagaggtttaattgacttccaggtctgtagagctggagtggcctcagaaaacttacaatgccagcggaaggggaagcaaacacctccttctttacatggcgtcagcaaggataagtgcagagtgaagggggacagagggaggcccc--ttaaaaaaacatcagatctgataagaattcactatcacaagaacagcatggaggtaactgcccgcatgattcaattacttcccaccaggtccctcccatgacacatgggaattatgggaactacaattcaagatgagatttgggtagggacacagccaaaccatatcaCATGTCTTCAATTTCTGCCTCCTAAAAATGACATCTTTgccaggtgtggtggctcacacctgtaatcccagcacttcagaaggctgaggcaggtgaatcacttgaggtcaggggtttgagaccagcctgaccaacatagtgaaaccccatctctactaaaaatacaaaaaagttagcctggtgtggtgatgcacacctgtagtctcagctacacaggaggctgaggcaggagaattgcttgaacccaagaggcggaggtggcagtgagccgagatcacatcactgcactccagcctgggtgacacagtgagattccacctcaaaaaacaaaacaaaac-aaaaaaCGACATGCTCAATCTTGGTCTTTCCTCAACTGTCAACTCTGACTGCTAAGAACCTAAAAGATATCTCCGCTTTACTGCACAGCAAGGTCTTtgttgtgagttgggttgtgtcctctcaaaatttatatattcaagttctaacccccagtatctcagaaggtaactttctttggaaatagcgtctttatagaattaaaatgagatcattagggtgggctgtaagaggatattaggacacagacactcacagagggacaatcgtgtgaagacacagggagaagacgcttgtctacaagccagcaagagaggcctcagaaga
i macNem1.NW_012011356v1   I 223 C 0
s cerAty1.NW_012002711v1     408868 1299 +    766320 TTTTTTAACTACCAGTTTTGATTTGCTTAGTGATTGTAAATCTGGTTTATCCACTTCTTCTG-CTTTTTAATTCACTCTGCATTGCTAGTTATACTACAACTCTCCAAACACTATTTCACAAATCAAGCTTTTACAGCAAAAGTAGGAAAATGTTTTAAGAAATTTTATTTTACCTTGTCAATGACCAAAAAACACACAAGACTGGCATCTTCACCCAATTTCTCTAGACTTTGTTTCTGGGATCAATCAGATACCACACGTTGTtattagtccattctcacactgctataagacaacctgagatggggtaatttataaaggaaagaggtttaattgactcccaggtctgcagagctggagtggcctcagaaaacttacaatgccagcagaaggggaagcaaacatctccttccttacatggtgtcagcaaggataagtgtagagtgaaggggggcagagggaggcccc--ttaaaaaaacatcagatctgataagaattcactatcacaagaacagcatggaggtaactgcctgcatgattcaattatttcccaccaggtccctcccatgacacgtgggaattatgggaactacaattcaagatgagatttgggtggggacacagccaaaccatatcaCATGTCTTCAATTTCTGCCTCCTAAAAATGACATATTTgccaggtgtggtggctcacacctgtaatcccagcactctagaaggctgaggcaggtgaatcacttgaggtcaggagtttgagaccagcctgactaacatggtgaaaccccatctctactaaaaatacaaaaaagttagtctggtgtggtggtgcacacctgtagtcccagctatacaggaggctaaggcaggagaattgcttgaacccaagaggcggaggtggcagtgagccgagatcacatcactgcattccagcctgggtgacacagtgggactccacctcaaaaaacaaaacaaaac-aaaaaaCGACATGCTCAATCTTGGTCTTTCCTCAACTGTCAACTCTGGCTGCTAAGAACCTAAAAGATATCTCCGCTTTACTGCACAGCAAGGTCTTtgttgtgagttgggttgtgtcctctcaaaatttatatattgaagttctagcccccagtatctcagaatgtaactttctttggaaatagcgtctttatagaattaaaatgagatcattagggtgagctctaagaggatattaggacacagacactcacagagggagaatcgtgtgaagacacagggagaagacgcttgtctacaagccaacaagacaggtctcagagga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28866606 1298 -  71996105 TTTTTTAACTACCAATTTTGATTTGCTTAGTGATTGTAAATCTGGTTTATCCACTTCTTCTG-CTTTTTAATTCACTCTGCATTGCTAGTTATACTACAACTCTCCAAACACTATTTCACAAATCAAGCTTTTACAGCAAAAGTAGGAAAATGTTTTAAGAAATTTTATTTTACCTTTTCAATGACCAAACAACACACAAGACTGGCATCTTCACCCAATTTCTCTAGACTTTGTTTCTGGGATCAATCAGATATCATACGTTGTtattagtccattctcacactgctataagacaacctgagat-gggtaatttataaaggaaagaggtttaattgacttccaggtctgcagagctggagtggcctcagaaaacttacaatgccagcagaaggggaagcaaacatcttcttccttacatggtgtcagcaaggataagtgtagagtgaaggggggcagagggaggcccc--ttaaaaaaacatcagatctgataagaattcactgtcacaagaacagcacggaggtaactgcctgcatgattcaattacttcccaccaggtccctcccatgacacgtgggaattatgggaactacaattcaagatgagatttgggtggggacacagccaaaccatatcaCATGTCTTCAATTTCTGCCCCCTAAAAATGACATCTTTgccaggtgtggtggctcacacctgtaatcccagcactctagaaggctgaggcaggtgaatcactggaggtcaggagtttgagaccagcttgaccaacatggtgaaaccccatctctactaaaaatacaaaaaagttagcctggtgtggtggtgcacacctgtagtcccagctacacaggaggctaaggcaggagaattgcttgaacccaagaggcggaggtggcagtgagccgagatcacatcactgcattccagcctgggtgacacagtgggactccacctcaaaaaacaaaacaaaac-aaaaaaCAACATGCTCAATCTTGGTCTTTCCTCAACTGTCAACTCTGACTGCTAAGAACCTAAAAGATATCTCTGCTTTACTGCACAGCAAGGTCTTtgttgtgagttgggttgtgtcctctcaaaatttatatactgaagttctaaccctcagtatctcagaatgtaactttctttggaaatagcatctttatagaattaaaatgagatcattagggtgggctctaagaggatattaggacacagacactcacagagggacaatcgtgtgaagacacagggagaagacgcttgtctacaagccaacaagacaggtctcagaaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      37470 1299 +    290775 TTTTTTAACTACCAATTTTGATTTGCTTAGTGATTGTAAATCTGGTTTATCCACTTCTTCTG-CTTTTTAATTCACTCTGCATTGCTAGTTATACTACAACTCTCCAAACACTATTTCACAAATCAAGCTTTTACAGCAAAAGTAGGAAAATGTTTTAAGAAATTTTATTTTACCTTGTCAATGACCAAAAAACACACAAGACTGGCATCTTCACCCAATTTCTCTAGACTTTGTTTCTGGGATCAATCAGATATCACACGTTGTtattagtccattctcacactgctataagacaacctgagatggggtaatttataaaggaaagaggtttaattgactcccaggtctgcagagctggagtggtctcagaaaacttacaatgccagcagaaggggaagcaaacatctccttccttacatggtgtcagcaaggataagtgcagagtgaaggggggaagagggaggcccc--ttaaaaaaacatcagatctgataagaattcactatcacaagaacagcatggaggtaactgcccgcatgattcaattatttaccaccaggtgcctcccatgacacgtgggaattatgggaactacaattcaagatgagatttgggtggggacacagccaaaccatatcaCATGTCTTCAATTTCTGCCTCCTAAAAATGACATCTTTgccaggtgtggtggctcacacctgtaatcccagcactctagaaggctgaggcaggtgaatcacttgaggtcaggagtttgagaccagcctgactaacatggtgaaaccccatctctactaaaaatacaaaaaagttagtctggtgtggtggtgcacacctgtagtcccagctatacaggaggctgaggcaggagaattgcttgaacccaagaggcggaggtggcagtgagccgagatcacatcactgcattccagcctgggtgacacagtgggactccacctcaaaaaacaaaacaaaac-aaaaaaCGACATGCTCAATCTTGGTCTTTCGTCAACTGTCAACTCTGACTGCTAAGAACCTAAAAGATATCTCCGCTTTACTGCACAGCAAGGTCTTtgttgtgagttgggttgtgtcctctcaaaatttatatattgaagttctaacccccagtatctcagaatgtaactttctttggaaatagcatctttatagaattaaaatgagatcattagggtgggctctaagaggatattaggacacagacactcacagagggacaatcgtgtgaagacacagggagaagacgcttgtctacaagccaacaagagaggcctcagaaga
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2471530 1295 -   3067355 TTTTTTAACTACCAATTTTGATTTGCTTAGTGATTGTAAATCTGGTTTATCCACTT---CTG-TTTTTTAATTCACTCTGCATTGATAGTTATACTACAACTCTCCAAACACTATTTCACAAATCAAGCTTTTACAGCAAAAGTAGGAAAATGTTTTAAGAAATTTTATTTTACCTTGTCAATGACCAAAAAACACATAAGACTGGCATCTTCACCCAATTTCTCTAGACTTTGTTTCTGGGATCAATCAGCTATCACACGTTGTtatcagtccattctcacactgctataagacaacctgagatggggcaatttataaaggaaagaggtttaattgactcccaggtctgcagagctggagtggcctcagaaaacttacaatgccaggggaaggggaagcaaacacctccttctttacatggtgtcagcaaggataagtgcagagtgaaggggggcaaagggaagcccc--ttaaaaaaccatcagatctggtaagaattcactatcacaagaacagcacggaggtaaccgcccgcatgattcaattacttcccaccaggtccctcccatgacacgtgggaattatgggaactacaattcaagatgacatttgggtggggacacagccaaaccgtatcaCATGTCTTCAATTTCTGCCTTCTAAAAATGACATCTTTgccaggtgtggtggctcacacctgtaatcccagcactccagaaggctgaggcaggtgaatcacttgaggtcaggagtttgagaccagcctgaccaacatggtgaaactcc-tctctactaaaaatacaaaaaagttagcctggtgtggtggtgcacacctgtagtcccagctatacaggaggctgagacaggagaattccttgaacccaagaggcggaggtagcagtgagccaagatcacatcactgcactccagcttgggtgacacagtgagactccacctcaaaaaacaaaacaaaac-aaaaaaCGACATGCTCAATCTTGGTCTTTCCTCAACTGTCAACTCTAACTGCTAAGAACCTAAAAGATATCTCCGCTTTACTGCACAGCAAGGTCTTtgttgtgagttgggttgtgtcctctcaaaatttgtatattgaagttctaacccccagtatctcagaatgtaactttctttggaaatagcatctttatagaattaaaatgagatcattagggtgggctctaagagaatattaggacacagacactcacagagggacaatcgtgtgaagacacagggagaagacgcttatctacaagccaacaagagaggcctccaaaga
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964    0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e gorGor5.CYUI01015250v1    5790042    0 +   6154872 C

a score=5109468.000000
s hg38.chr6_GL000254v2_alt   778234 1305 +   4827813 aatcaacactgcggacaccttaatgtcagaattttggcctccaggactatgagaaaataaatttttcttgttgaagcttcccagtctgtgatacttcgctattgcagctctagcagactaatacaCCCTTCAAATTCACCAGGGCCAAATTGAACCCACCATTCTCCTCTAAAAATTTCTTTTGCTTTCACCATTTTGTTTAAGGTCCTCACTCTTCCCATCACTCAAACTCTGAAAGTTCTTTTCCCATAGTGAAAAGGCCTAATGAAGGTGTTTCCCCATGGATTCTTTCCTTTTAGTTCTGTCTTGTGGACTGCAGCTGACTCAGCCCTGAGGGTGCCCTTGATGTCCCCGCTCAATTAGCATCTCTACCATTTCACCATTGCTTGCATGAGACAGTCGAAGGGTCATGAAAGCTTCT-GTGATCTGGAAGACGTATTCTATAACAGTAGCGTTTCACAGCAGAAGCCAGACTTGCAAcattgcaaagatcatgggatttggaagcagaaaacctgagtttctatttggactctgccacttaccaagtgtagaacttttggaaaAACCTTGGAAAGTCTTCCTATCTCCATTATGGATCAAGAGTGTGACCTTGGTTCACCCTCTCACCATTCTTTCCTTAA-TTTTTTTTTCTTATAAATAATAGCTTCCACCTTCCACCCTGCAGAGCAATTGTAAACTTCATAACACATGCGAAGCGCTTGACTCAAAAAACAGGAAGCACTAAGGACTGTTAATTTAACTGGCATCTCATTACTTTTATAAGAAAGCCTAGCataaagaaaaggtgtgtccactgttatgggttgaattgtgccctcccaagaaagatacattgaagctctactccccaaacct-cagaatgtgcccttatttggaaatagcagcattgcagatgtcattagttaagacaaagttatactagagtagagcaggccctaatccaatacggcaggtgtctttacgaaaagatagcatgtgaagacacaaacatacaaagagaaggcaaccatgtggtgacaagaggagagactggagtgatgctcctgcaagccaa-gattgctggcaaaccaccagaagttaggaagaggcaaggtaggattcccttacaggtttcagagggagggtagccagctgacactttagactgctaacctccagagttatgagacaataagttcctgttgtttgaagccgcccagtttgtggtacattgttgcagcagccctaggaaactgatacatctacacaatgcaatgtccttcagccataaaaaggaatgaa
s panPan2.chr6             29980333 1304 + 173848474 aatcaacactgcggacaccttaatgtcagaattttggcctccaggactatgagaaaataaatttttcttgttgaagcttcccagtctatgatacttcgctattgcagctctagcaaactaatacaCCCTTCAAACTCACCAGGGCCAAATTGAACCCACCATTCTCCTCTAAAAATTTATTTTGCTTTCACCATTTTGTTTAAGGTCCTAACTCTTCCCATCACTCAAACTTTGAAAGTTCTTTTCCCATAGTGAAAAGGCCTAATGAAGGTGTTTCCCCATGGATTCTTTCCTTTTGGTTCTGTCTTGTGGACTGCAGCTGACTCAGCCCTGAGGGTGCCCTTGATGTCCCTGCTCAATTAGCATCTCTACCATTTCACCATTGCTTGCATGAGACAGTCGAAGGGTCATGAAAGCTTCT-GTGATCTGGAAGACGTATTCTATAACAGTAGCCTTTCACAGCAGAAGCCAGGCTTGCAATATtgcaaagatcatgggatttggaagcagaaaacctgagtttctatttggactctgccacttaccaagtgtagaacttttggaaaAACCTTGGAAAGTCTTCCTATCTCCATTATGGATCAAGAGTGTGACCTTGGTTCACCCTCTGACCACTCTTTCCTTAA---TTTTTTTCTTATAAATAATAGCTTCCACCTTCCACCCTGCAGAGCAATTGTAAACTTCATAACACATGCGAAGCGCTTGACTCAAAAAACAGGAAGCACTAAGGACTGTTAATTTAACTGGCATCTCATTACTTTTATAAGAAAGCCTAGCataaagaaaaggtgtgtccactgttatgggttgaattgtgtcctcccaagaaagatacattgaagctctactccccaaacctacagaatgtgcccttatttggaaatagcagcattgcagatgtcattagttaagacaaagttatactagagtagagcaggccctaatccaatacggcaggtgtctttacgaaaagatagcatgtgaagacacaaacatacaaagagaagacaaccatgtggtgacaagaggagagactggagtgatgctcctgcaagccaa-gattgctggcaaaccaccagaagttaggaagaggcaaggtaggattcccttacaggtttcagagggagggtagccagccgacactttagactgctaacctccagagttatgagacaataagttcctgttgtttgaagccgcccagtttgtggtacattgttgcagcagccctaggaaactgatacatccacacaatgcaatgtccttcagccataaaaaggaatgaa
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74486116 1302 + 122973662 aatcaacactgaggacaccttaatctcagaattttggcctccaggactatgagaaaataaatatttcttgttgaagcttcccagtctgtgatactttgctattgcagctctagcaaactaatacaCCCTTCAAACTCATCAGGGCCAAATGGAACCCACCATTCTCCTCTAAAAATTTCTTTTGCCTTCACCATCTTGTTTAAGGTCCTCACTCTTCCCATCACTCAAACTCTGAAAGTTCTTTTCCCTTAGTGAAAAGGCCTAATGAAGGTGTTTCCCCATGGATTCTTTCCTTTTAGTTCTGTCATGTGGACTGCAGCTGACTCAGCCCTGAGGGTGCCCTTGATGTCCCCGCTCAATTAGCATCTCCACCATTTCACCATTGCTTGCATGAGACAGTTGAAGGGTCATGAAAGCTTCT-GTGATCTGGAAGACGTATTCTATAACAGCAGCCTTTCACAGCAGAAGCCAGACTTGCAATATtgcaaagatcatggcatttggaagcagaaaacctgagtttctatttggactctgccacttaccaggtgtagaacttttgg-aaaaccTTGGAAAGTCTTCCTATCTCCATTATGGATCAAGAGTGTGACCTTGGTTCACCCTCTGAGCATTCTTTCCTTAA-TTTTTTTTTCTTATAAATAATAGCTTCCACCTTCCACCCTGTAGAGCAATTGTAAAC-TCATAACACATGCAAAGCGCTTGACTCAAAAAACAGGAAGCACTAAGGACTGTTAATTTAACTGGCATCCCATTACTTTTATAAGAAAGCCTAGCataaagaaaacgtgtgtccactgttatgggttgaatagtgtcctcccaagaaagatacattgaagctctattccccaaacct-cagaatgtggccttttttggaaatagcagcattgcagatgtcattagttaagacaaagttatactagagtagagcaggccctaatccaatatggcgtgtgtctttatgaaaagatagcgtgtgaagacacaaacatacaaagagaaggcaatc--gtggtgacaagaggagagattggagtgatgctcctgcaagccagcgattgctggcaaacaaccagaagttaggaagaggcaaggtaggattcccctacaggtttcagagggagggttgccagctgacactttagactgctaacctccagagttatgaaacagtaagtttctgttgtttgaagccgcccagtttgtggtactttgttgcagtagtcctaggaaactgatacatccacacaatgcaatgtccttcagccataaaaaggaatgaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29951216 1305 + 172585720 aatcaacactgcagacacctcgatctcagaattctggcctccaggactatgagaaaatgaatatttcatattgaagcttcccggtctgtgatactttgctattacagttctagcaaactaatacaCCCTTCAAACTCAACAGAGCCAACTGGAACCCACCATTCTCCTCTAAAAATTTCTTTTGCCTTCACCATCTTGTTTAAAGTCCTCACTCTTCCCATCACTCAAACTCTGAAAGTTCTTTTCCCATAGCGAAAAAGCCTCATGAAGGTGTTTCCCCATGGCTTCTTCCC-TTTAGTTCTGTCTTGTGGACTGCAGCTGACTCAGCCCTGAGGGTGCCCTTAATGTCCCTGCTCAATTAGCATCTCCACCATTTCACCATCGCTTACATGAGACAGTCGAAGGGTCATGAAAGCTTCCCGTGATCTGGAAGACGTATGCTATAACAGCAGCCTTTCACAGCAGAAACCAGACTTGCAATATtgcaaagatcatggaatttggaagcagaaaacctgagtttctatttggactctgccacttaccaggtgtagaacttttgg-aaaaccTTGGAAAGTCTCCCTATCTCCATTATGGATCAAGAGTGTGACCTTGGTTCACCTTCTGAGCATTCTTTCCTTAATTTTTTTTTTCTTATAAATAATAGCTTCCACTTTCCACCCTGTAGAGTAATTGTAAACTTCATAATACATGCAAAGCTCTTGACTCAAAAAACAGGAAGCACAAAGGAGTGTTAATTTAACTGGCATCTCTTTACTTTTATAAGAAAGCCTAGCataaagaaaatgtgtgtccactgttatgggttgaattatgttctcccaagaaagacacattgaagctctactccccaaacct-cagaatgtgcccttatttggaaatagcagcattgcagatgtcattagttaagacaaagtcatataagagtagggcaggccctaatccaatatggtgggtgtctttacgaaaagacagcatgtgaagacacaaacatacaaagagaaggcaaccatgtggtgacaaggggagagattggagtgatgctcctgcaagccaaagattgctggcaaaccaccagaagttaggaagaggcaaggtaggattcccctacaggtttcagagagaaggtggtcagctaacactttaga-tgctaacctccagagttatgagacaataagtttctgttgtttgaagccccccagtttgtggtactttgttgcagcagccctaggaaactgatacatccatacaatgcaatgtcattcagccgttaaaaggaatgaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29615150 1304 - 170955103 aatcaacactgcagacacctcgatctcagaattctggcctccaggactatgagaaaatgaatatttcatattgaagcttcccggtctgtgatactttgctattacagttctagcaaactaatacaCCCTTCAAACTCAACAGAGCCAACTGGAACCCACCATTCTCCTCTAAAAATTTCTTTTGCCTTCACCATCTTGTTTAAAGTCCTCACTCTTCCCATCACTCAAACTCTGAAAGTTCTTTTCCCATAGCGAAAAAGCCTCATGAAGGTGTTTCCCCATGGCTTCTTCCC-TTTAGTTCTGTCTTGTGGACTGCAGCTGACTCAGCCCTGAGGGTGCCCTTAATGTCCCTGCTCAATTAGCATCTCCACCATTTCACCATCGCTTACATGAGACAGTCGAAGGGTCATGAAAGCTTCCCGTGATCTGGAAGACGTATTCTATAACAGCAGCCTTTCACAGCAGAAACCAGACTTGCAATATtgcaaagatcatggaatttggaagcagaaaacctgagtttctatttggactctgccacttaccaggtgtagaacttttgg-aaaaccTTGGAAAGTCTCCCTATCTCCATTATGGATCAAGAGTGTGACCTTGGTTCACCTTCTGAGCATTCTTTCCTTAA-TTTTTTTTTCTTATAAATAATAGCTTCCACTTTCCACCCTGTAGAGTAATTGTAAACTTCATAATACATGCAAAGCTCTTGACTCAAAAAACAGGAAGCACAAAGGAGTGTTAATTTAACTGGCATCTCTTTACTTTTATAAgaaagcctagcataaagaaaatgtgtgtccactgttatgggttgaattatgttctcccaagaaagacacattgaagctctactccccaaacct-cagaatgtgcccttatttggaaatagcagcattgcagatgtcattagttaagacaaagtcatataagagtagggcaggccctaatccaatatggtgggtgtctttacgaaaagacagcatgtgaagacacaaacatacaaagagaaggcaaccatgtggtgacaaggggagagattggagtgatgctcctgcaagccaaagattgctggcaaaccaccagaagttaggaagaggcaaggtaggattcccctacaggtttcagagagaaggtggtcagctaacactttaga-tgctaacctccagagttatgagacaataagtttctgttgtttgaagccccccagtttgtggtactttgttgcagcagccctaggaaactgatacatccatacaatgcaatgtcattcagccgtaaaaaggaatgaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2658581 1305 -   2996164 aatcaacactgcagacacctcgatctcagaattctggcctccaggactatgagaaaatgaatatttcatattgaagcttcccggtctgtgatactttgctattacagttctagcaaactaatacaCCCTTCAAACTCAACAGAGCCAACTGGAACCCACCATTCTCCTCTAAAAATTTCTTTTGACTTCACCATCTTGTTTAAAGTCCTCACTCTTCCCATCACTCAAACTCTGAAAGTTCTTTTCCCATAGCGAAAAAGCCTCATGAAGGTGTTTCCCCATGGCTTCTTCCC-TTTAGTTCTGTCTTGTGGACTGCAGCTGACTCAGCCCTGAGGGTGCCCTTAATGTCCCTGCTCAATTAGCATCTCCACCATTTCACCATCGCTTACATGAGACAGTCGAAGGGTCATGAAAGCTTCCCGTGATCTGGAAGACGTATGCTATAACAGCAGCCTTTCACAGCAGAAACCAGACTTGCAATATtgcaaagatcatggaatttggaagcagaaaacctgagtttctatttggactctgccacttaccaggtgtagaacttttgg-aaaaccTTGGAAAGTCTCCCTATCTCCATTATGGATCAAGAGTGTGACCTTGGTTCACCTTCTGAGCATTCTTTCCTTAATTTTTTTTTTCTTATAAATAATAGCTTCCACTTTCCACCCTGTAGAGTAATTGTAAACTTCATAATACATGCAAAGCTCTTGACTCAAAAAACAGGAAGCACAAAGGAGTGTTAATTTAACTGGCATCTCTTTACTTTTATAAgaaagcctagcataaagaaaatgtgtgtccactgttatgggttgaattacgttctcccaagaaagacacattgaagctctactccccaaacct-cagaatgtgcccttatttggaaatagcagcattgcagatgtcattagttaagacaaagtcatataagagtagggcaggccctaatccaatatggtgggtgtctttacgaaaagacagcatgtgaagacacaaacatacaaagagaaggcaaccatgtggtgacaaggggagagattggagtgatgctcctgcaagccaaagattgctggcaaaccaccagaagttaggaagaggcaaggtaggattcccctacaggtttcagagagaaggtggtcagctaacactttaga-tgctaacctccagagttatgagacaataagtttctgttgtttgaagccccccagtttgtggtactttgttgcagcagccctaggaaactgatacatccatacaatgcaatgtcattcagccgtaaaaaggaatgaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     410167 1301 +    766320 aatcaacactgcggacaccttgatctcagaattctggcctccaggactatgagaaaataaatatttcatgttgaagcttcccagtctgtgatactttgctattacagttctagtaaactaatacaCCCTTCAAACTCAACAGGGCCAACTGGAACCCACCATTCTCCTCTAAAAATTTCTTTTGCCTTCA-CATCTTGTTTAAAGTCCTCACTCTTGCCATCACTCAAACTCTGAAAGTTCTTTTCCCATAGTGAAAAGGCCTCATGAAGGTGTTTCCCCATGGCTTCTTCCC-TTTAGTTCTGTCTTGTGGATTGCAGCTGACTCAGCCCTGAGGGTGCCCTTAATGTCCCTGCTCAATTAGCATCTCCCCCATTTCACCATCGCTTACATGAGACAGTCGAAGGATCATGAAAGCTTCCCGTGACCTGGAAGACGTATGCTATAACAGCAGCCTTTCACAGCAGAAACCAGACTTGCAATATtgcaaagatcatggaatttggaagcagaaaacctgagtttctatttggactctgccacttaccaggtgtagaacttttgg-aaaaccTTGGAAAGTCTCCCTATCTCCATTATGGATCAAGAGTGTGACCTTGGTTCACCTTCCGAGCATTCTTTCCTTAA--TTTTTTTTCTTATAAATAATAGCTTCCACTTTCCACCCTGTAGAGTAATTGTAAACTTCATAATACATGCAAAGCTCTTGACTCAAAAAACAGGAAGCACAAAGGAGTGTTAATTTAACTGGCATCTCTTTACTTTTATAAGAAAGCCTAGCataaagaaaatgtgtgtccactgttatgggtt-aattatgttctcccaagaaagacacattgaagctctactccccaaacct-cagaatgtgcccttatttggaaatagcagcattgcagatgtcattagttaagacaaagtcatattagagtagggcaggccctaattcaatatggtgggtgtctttatgaaaagatagcatgtgaagacacaaacatacaaagagaaggcaaccatgtggtgacaaggggagagattggagtgatgctcctgcaagccaaagattgctggcaaaccaccagaagttaggaagaggcaaggtaggattcccctacaggtttcagagagaaggtggtcagctaacactttaga-tgctaacctctagagttatgagacaataagtttctgttgtttgaagccccccagtttgtggtactttgttgcagcagccctaggaaactgatacatccacacaatgcaatgtccttcagccataaaaaggaatgaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28867904 1303 -  71996105 aatcaacactgcggacaccttgatctcagaattctggcctccaggactatgagaaaataaatatttcatgttgaagcttcccagtctgtgatactttgctattacatttctagcaaactaatacaCCCTTCAAACTCAACAGGGCCAACTGGAACCCACCATTCTCCTCTAAAAATTTATTTTGCCTTCACCATTTTGTTTAAAGTCATCACTCTTCCCATCACTCAAACTTTGAAAGTTCTTTTCCCATAGCGAAAAGGCCTCATGAAGGTGTTTCCCCATGGCTTCTTCCCTTTTAGTTCTGTCTTGTGGACTGCAGCTGACTCAGCCCTGAGGGTGCCCTTAATGTCCCTGCTCAATTAGCATCTCCACCATTTCACCGTCGCTTACATGAGACAGTCGAAGGGTCATGAAAGCTTCCCGTGATCTGGAGGACGTATTCTATAACAGCAGCCTTTCACAGCAGAAACCAGACTTGCAATATtgcaaaggtcatggaatttggaagcagaaaacctgagtttctatttggactctgccactcaccaggtgtagaacttttgg-aaaaccTTGGAAAGTCTCCCTATCTCCATTATGGATCAAGAGTGTGACCTTGGTTCACCTTCTGAGCATTCTTTCCTTAA-TTTTTTTTTCTTATAAATAATAGCTTCCACTTTCCACCCTGTAGAGTAATTGTAAACTTCATAATACATGCAAAGCTCTTGACTCAAAAAACAGGAAGCACAAAG--GTGTTAATTTAACTGGCATCTCTTTACTTTTATAAgaaagcctagcataaagaaaatgtgtgtccactgttatgggttgaattgtgttctcccaagaaagacacattgaagctctactccccaaacct-cagaatgcgcccttatttggaaatagcagcattgcagatgtcattagttaagacaaagtcgtattagagtagggcaggccctaatccaatatgatgggtgtctttacgaaaagatagcatgtgaagacacaaacatacaaagagaaggcaaccatgtggtgacaaagggagaaattggagtgatgctcctgcaagccaaagattgctggcaaaccaccagaagttaggaagaggcaaggtaggattcccctacaggtttcagagagaaggtggtcagctaacactttaga-tgctaacctccggaaatatgagacaataagtttctgttgtttgaagccccccagtttgtggtactttgttgcagcagccctaggaaactgatacatccacacaatgcaatgtccttcagccattaaaaggaatgaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      38769 1304 +    290775 aatcaacaccacggacaccttgatctcagaattctggcctccaggactatgagaaaataaatatttcatgttgaagcttcccagtctgtgatactttgctattacagttctagcaaactaatacaCCCTTCAAACTCAACAGGGCCAACTGGAACCCACCATTCTCCTCTAAAAATTTCTTTTGCCTTCACCATCTTGTTTAAAGTCCTCACTCTTCCCATCACTCAAACTCTAAAAGTTCTTTTCCCATAGTGAAAAGGCCTAATGAAGGTGTTTCCCCGTGGCTTCTTCCCTTTTAGTTCTGTCTTGTGGACTGCAGCTGACTCAGCCCTGAGGGTGCCCTTAATGTCCCTGCTCAATTAGCATTTCCACCATTTCACCATCGCTTACATGAGACAGTCGAAGGGTCATGAAAGCTTCCCGTGACCTGGAAGACGTATTCTATAACAGTAGCCTTTCACAGCAGAAACCAGACTTGCAATATtgcaaaggtcatggaatttggaagcagaaaacctgagtttctatttggactctgccacttaccaggtgtagaacttttgg-aaaaccTTGGAAAGTCTCCCTATCTCCATTATGGATCAAGAGTGTGACCTTGGTTCACCTTCTGAGCATTCTTTCCTTAA-TTTTTTTTTCTTATAAATAATAGCTTCCACTTTCCACCCTGTAGAGTAATTGTAAACTTCATAATACATGCAAAGCTCTTGACTCAAAAAACAGGAAGCACAAAGGAGTGTTAATTTAACTGGCATCTCTTTACTTTTATAAGAAAGCCTAGCataaagaaaatgtgtgtccactgttatgggtt-aattatgttctcccaagaaagacacattgaagctctactccccaaacct-cagaatgtgcccttatttggaaatagcagcattgcagatgtcattagttaagacaaagtcatattagagtagggcaggccctaatccaatatgatgggtgtctttatgaaaagatagcatgtgaagacacaaacatacaaagagaaggcaaccatgtggtgacaagacgagagattggagtgatgctcctgcaagccaaagattgctggcaaaccaccagaagttaggaagaggcaaggtaggattcccctacaggtttcagagagaaggtggtcagctaacactttaga-tgctaacctccagagttatgagacaataagtttctgttgtttgaagccccccagtttgtggtactttgttgcagcagccctgggaaactgatacatccacacaatgcaatgtccttcagccataaaaacgaatgaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2472825 1302 -   3067355 aatcaacaccgcggacaccttgatctcagaattctggcctccaggactatgagaaaataaatatttcatgttgaagcttcccggtctgtgatactttgctattacagttctagcaaactaatacaCCCTTTAAACTCAACAGGGCCAACTGGAACCCACCATTCTCCTCTAAAAATTTCTTTTGCCTTCACCATCTTGTTTAACGTCCTCACTCTTCCCATCACTCAAACTCTGAAAGTTCTTTTCCCATAGTGAAAAGGCCTAATGAAGGTGTTTCCCCATGGCTTCTTCCCTTTTAGTTCTGTCTTGTGGACTGCAGCTGACTCAGCCCTGAGGGTGCCCTTAATGTCCCTGCTCAATTAGCATCTCCCCCATTTCACCATCGCTTACATGAGACAGTCGAAGGGTCATGAAATCTTCCGGTAATCTGTAAGACGTATTCTATAACAGCAGCCTTTCACAGCAGAAACCAGACTTGCAATATtgcaaagatcatggaatttggaagcag-aaacctgagtttctatttggactctgccacttaccaggtgtagaacttttgg-aaaaccttggaaagtctccctgtctccattATGGATCAAGAGTGTGACCTTGGTTCACCTTCTGAGCATTCTTTCCTTAA---TTTTTTTCTTATAAATAATAGCTTCCACTTTCCACCCTGTAGAGTAATTGTAAACTTCATAATACATGCAAAGCTCTTGACTCAAAAAACAGGAAGCACAAAGGAGTGTTAATTTAACTGGCATCTGTTTACTTTTATAAGAAAGCCTAGCataaagaaaatgtgtgtccactgttatgggttgaattatgttctcccaagaaagacacattgaagctctactcccccaacct-cagaatgtgcccttatttggaaatagcagcattgcagatgtcattagttaagacaaagtcatattagagtagggcaggccctaatccaatatggtgggtgtctttatgaaaagatagcatgcaaagacacaaacatacaaagagaaggcaaccatgtggtgacaaggggagagattggagtgatgctcctgcaagccaaagattgctggcaaaccactagaaattaggaagaggcaaggtaggactcccctacaggtttcagagagaaggtggtcagctaacactttaga-tgctaacctccagagttatgagacaataagtttctgttgtttgaagccccccagtttgtggtactttgttgcagcagccctaggaaactgatacatccacacaatgcaatgtcgttcagccataaaaaggaatgaa
i colAng1.NW_012115566v1   C 0 I 15
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964    0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e gorGor5.CYUI01015250v1    5790042    0 +   6154872 C
e panTro5.chr6             29750603    2 + 175400573 I

a score=21901.000000
s hg38.chr6_GL000254v2_alt   779539 8 +   4827813 acactgac
s panPan2.chr6             29981637 8 + 173848474 acactgac
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74487418 8 + 122973662 acaccaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29952521 8 + 172585720 gcaccaac
i rheMac8.chr4             C 0 I 7
s macFas5.chr4             29616454 8 - 170955103 gcaccaac
i macFas5.chr4             C 0 I 7
s macNem1.NW_012011356v1    2659886 8 -   2996164 gcaccaac
i macNem1.NW_012011356v1   C 0 I 7
s cerAty1.NW_012002711v1     411468 8 +    766320 gcaccaac
i cerAty1.NW_012002711v1   C 0 I 7
s chlSab2.chr17            28869207 8 -  71996105 gcaccaac
i chlSab2.chr17            C 0 I 7
s manLeu1.NW_012099233v1      40073 8 +    290775 gcaccaac
i manLeu1.NW_012099233v1   C 0 I 7
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964 0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e colAng1.NW_012115566v1    2474127 15 -   3067355 I
e gorGor5.CYUI01015250v1    5790042 0 +   6154872 C
e panTro5.chr6             29750603 2 + 175400573 I

a score=97431.000000
s hg38.chr6_GL000254v2_alt   779547 25 +   4827813 attggctatcatgtggatgaaatgt
s panPan2.chr6             29981645 25 + 173848474 attggctatcatgtggatgaaatgt
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74487426 25 + 122973662 attggctatcatgtggatgaaatgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29952536 25 + 172585720 ataggctatcgtgtggatgaaatgt
i rheMac8.chr4             I 7 C 0
s macFas5.chr4             29616469 25 - 170955103 ataggctatcgtgtggatgaaatgt
i macFas5.chr4             I 7 C 0
s macNem1.NW_012011356v1    2659901 25 -   2996164 ataggctatcgtgtggatgaaatgt
i macNem1.NW_012011356v1   I 7 C 0
s cerAty1.NW_012002711v1     411483 25 +    766320 atcggctatcgtgtggatgaaatgt
i cerAty1.NW_012002711v1   I 7 C 0
s chlSab2.chr17            28869222 25 -  71996105 atcggctatcatgtggatgaaatgt
i chlSab2.chr17            I 7 I 301
s manLeu1.NW_012099233v1      40088 25 +    290775 atcggctatcgtgtggatgaaatgt
i manLeu1.NW_012099233v1   I 7 C 0
s colAng1.NW_012115566v1    2474142 25 -   3067355 atcggctatcgtgtggatgaaatgt
i colAng1.NW_012115566v1   I 15 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964  0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e gorGor5.CYUI01015250v1    5790042  0 +   6154872 C
e panTro5.chr6             29750603  2 + 175400573 I

a score=992099.000000
s hg38.chr6_GL000254v2_alt   779572 249 +   4827813 gaaaacagcatgttcagtgaaagaagccaggcacagaagaccacatattatataattccatgtatgtaaagtgtccagaataggtgaatccatacagactaaacacagattaatggttgccaggggctgcaggaggggagaataggaactgacggctaatgagtataagctttctcttaagggtgatataagtgatctggaattagatagcaatgatagttccaaatcttgtgaatatatttaaaatta
s panPan2.chr6             29981670 249 + 173848474 gaaaacagcatgttcagtgaaagaagccaggcacagaagaccacatattatataattccatgtatgtaaagtgtccagaataggtgaatccatacagactaaacacagattaatggttgccaggggctgcaggaggggagagtaggaactgacggctaatgagtataagctttctcttaagtgtgatataagtgatctggaattagatagcaatgatagttccaaatcttgtgaatatatttaaaatta
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74487451 249 + 122973662 gaaaacagcatgttcagtgaaagaagtcaggcacagaagaccatatattatacaattccatttacgtaaagagtccagaataggtgaatccacagagactaaacacagattaatggttgccaggggctgcaggaggggagaataggaactgacggctaatgagtataaactttcttttaagggtgatataagtgatctggaattagatagcaatgatagttccaaatcttgtgaatatatttaaaatta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29952561 249 + 172585720 gaaaacagcatgttcagtgaaagaagccaggcacagaagacaacatattatataattccatttatgtaaagtgtccagaataggtgaatccatagagactaaacacagattaatggttgccaggggctgcaggaggggaaaataggaactgacagctaatgaatataagctttctcttaagggtgatataagtgatctggaattcggtagcaatgatagttccaaatcttgtgaatatatttagaatta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29616494 249 - 170955103 gaaaacagcatgttcagtgaaagaagccaggcacagaagacaacatattatataattccatttatgtaaagtgtccagaataggtgaatccatagagactaaacacagattaatggttgccaggggctgcaggaggggaaaataggaactgatggctaatgaatataagctttctcttaagggtgatataagtgatctggaattcggtagcaatgatagttccaaatcttgtgaatatatttagaatta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2659926 249 -   2996164 gaaaacagcatgttcagtgaaagaagccaggcacagaagacaacatattatataattccatttatgtaaagtgtccagaataggtgaatccatagagactaaacacagattaatggttgccaggggctgcaggaggggaaaataggaactgacagctaatgaatataagctttctcttaagggtgatataagtgatctggaattcggtagcaatgatagttccaaatcttgtgaatatatttagaatta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     411508 249 +    766320 gaaaacagcatgttcagtgaaagaagccaggcacagaagacaacatattatataattccatttatgtaaagtgtccagaataggtgaatccatagagactaaacacagattaatggttgccaggggctacaggagaggaaaataggaactgacggctaatgaatataagctttctcttaagggtgatataagtgatctggaattagatagcaatgatagttccaaatcttgtgaatatattTACAATTA
i cerAty1.NW_012002711v1   C 0 I 9
s chlSab2.chr17            28869548 249 -  71996105 gaaaacagcacgttcagtgaaagaagccaggcacagaagataacatattatataattccatttatgtaaagtgtccagaataggtgaatccatagagactaaacacagattaatggttgccagggactgcaggaggggaaaataggaactgacggctaatgaatataagctttctcttaagggtgatataagtgatctggaattaggtagcaatgatagttccaaatcttgtgaatatatttacaatta
i chlSab2.chr17            I 301 C 0
s manLeu1.NW_012099233v1      40113 249 +    290775 gaaaacagcatgttcagtggaagaagccaggcacagaagacaacatattatataattccatttatgtaaagtgtccagaataggtgaatccatagagactaaacacagattaatggttaccaggggctacaggaggggaaaataggaactgacggctaatgaatataagctttctcttaagggtgatataagtgatctggaattaggtagcaatgatagttccaaatcttgtgaatatatttacaatta
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2474167 249 -   3067355 gaaaacagcatgttcagtaaaagaagccaggcacagaagacaacatattatataattccatttatgtaaagtgtccagaataggtgaatccatagagactaaacacagattaatggttgccaggggctgcaggaggggaaaataggaactgatggctaatgaatataagctttctcttaagggtgatataagtgatctggatttatgtagcaatgatagttccaaatttggtgaatatatttacaatta
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964   0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e gorGor5.CYUI01015250v1    5790042   0 +   6154872 C
e panTro5.chr6             29750603   2 + 175400573 I

a score=79107.000000
s hg38.chr6_GL000254v2_alt   779821 26 +   4827813 aattgtgtaacttaaaatggtgaatt
s panPan2.chr6             29981919 26 + 173848474 aattgtgtaacttaaaatggtgaatt
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74487700 26 + 122973662 aattgtttaacttaaaatggtgaatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29952810 26 + 172585720 aattgtttaacataaaatggtgaatt
i rheMac8.chr4             C 0 I 143
s macFas5.chr4             29616743 26 - 170955103 aattgtttaacataaaatggtgaatt
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2660175 26 -   2996164 aattgtttaacataaagtggtgaatt
i macNem1.NW_012011356v1   C 0 I 143
s chlSab2.chr17            28869797 26 -  71996105 aattgtttaacataaaatggtgaatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      40362 26 +    290775 aattgtttaacataaaatggtgaatt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2474416 26 -   3067355 aattgtttaacataaaatggtgaatt
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964  0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e cerAty1.NW_012002711v1     411757  9 +    766320 I
e gorGor5.CYUI01015250v1    5790042  0 +   6154872 C
e panTro5.chr6             29750603  2 + 175400573 I

a score=71354.000000
s hg38.chr6_GL000254v2_alt    779847 37 +   4827813 ttatgtggaataatagc----aataaaattCA--ATAGAATAA
s panPan2.chr6              29981945 37 + 173848474 ttatgtggaataatagc----aataaaattCA--ATAGAATAA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74487726 37 + 122973662 ttatgtggaataatagc----aataaaattAA--ATAGAATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             142632753 37 - 172585720 TTATGTGGAATAATAGC----aataaaattaa--atagaataa
i rheMac8.chr4             n 143 C 0
s macFas5.chr4              29616770 42 - 170955103 TTCAGT-GAACAATGGCTAGAAATGGGATCCACCAGAGAATAA
i macFas5.chr4             I 1 I 90
s chlSab2.chr17             28869823 37 -  71996105 ttatgtggaataatagc----aataaaattAA--ATAGAATAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1       40388 37 +    290775 ttatgtggaataatagc----aataaaattAA--ATAGAATAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1     2474442 37 -   3067355 ttatgtggaataatcgc----aataaaattAA--ATAGAATAA
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17                57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1      562336 62472 +    730504 T
e saiBol1.JH378357             63964  0 -    242197 C
e otoGar3.GL873550             17838 8883 +  18854210 I
e aotNan1.NW_018509740v1      107251 1206 -    457564 I
e cebCap1.NW_016108310v1       94789 1246 +    106389 I
e cerAty1.NW_012002711v1      411757  9 +    766320 I
e macNem1.NW_012011356v1     2660201 143 -   2996164 I
e gorGor5.CYUI01015250v1     5790042  0 +   6154872 C
e panTro5.chr6              29750603  2 + 175400573 I

a score=159965.000000
s hg38.chr6_GL000254v2_alt    779884 69 +   4827813 AACAAAATGAACGACATGAAGCCCAACACCTCACTGGAACATGCAAAACCCTTCCTTTATTCTCTGGTG
s panPan2.chr6              29981982 69 + 173848474 AACAAAATGAACGACATGAAGCCCAACATCTCACTGGAACATGCAAAACCCTTCCCTTATTCTCTGGTG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74487763 69 + 122973662 AACAAAATGAGTGACATGAAGCACAACACCTCACTGGAACATGCAAACCCCTTCCCTTATTCTCTGGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             142632790 64 - 172585720 aacaaaatgaaTGACATGAAACCCAACACC-----GGAACATGCAAAACCCTTCCCTTATTCTCTGGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             141338240 64 + 170955103 aacaaaatgaaTGACATGAAACCCAACACC-----GGAACATGCAAAACCCTTCCCTTATTCTCTGGTG
i macFas5.chr4             n 90 C 0
s chlSab2.chr17             28869860 69 -  71996105 AACAAAATGAATGACATGAAACCCAACACCTCACTGGAACATGCAAAACCCTTCCCTTATTCTCTGGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1       40425 69 +    290775 AACAAAATGAATGACATGAAACCCAACACCTCACCGGAATATGCAAAACCCTTCCCTTATTCTCTGGTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1     2474479 69 -   3067355 AACAAAATGAATGACATGAAACCCAACACCTCACTGGAACATGCAAAACCCTTCCCTTATTCTCTGGTG
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17                57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1      562336 62472 +    730504 T
e saiBol1.JH378357             63964  0 -    242197 C
e otoGar3.GL873550             17838 8883 +  18854210 I
e aotNan1.NW_018509740v1      107251 1206 -    457564 I
e cebCap1.NW_016108310v1       94789 1246 +    106389 I
e cerAty1.NW_012002711v1      411757  9 +    766320 I
e macNem1.NW_012011356v1     2660201 143 -   2996164 I
e gorGor5.CYUI01015250v1     5790042  0 +   6154872 C
e panTro5.chr6              29750603  2 + 175400573 I

a score=77153.000000
s hg38.chr6_GL000254v2_alt    779953 24 +   4827813 GATCCCATTTCTCGCCATTGTTCA
s panPan2.chr6              29982051 24 + 173848474 GATCCCATTTCTCGCCATTGTTCA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74487832 24 + 122973662 GATCCCATTTCTCACCATTGTTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             142632854 24 - 172585720 GATCCCATTTCTAGCCATTGTTCA
i rheMac8.chr4             C 0 T 6034
s macFas5.chr4             141338304 24 + 170955103 GATCCCATTTCTAGCCATTGTTCA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1      411766 24 +    766320 GATCCCATTTCTAGCCATTGTTCA
i cerAty1.NW_012002711v1   I 9 C 0
s chlSab2.chr17             28869929 24 -  71996105 GATCCCATTTCTAGCCATTGTTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1       40494 24 +    290775 GATCCCATTTCTAGCCATTGTTCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1     2474548 24 -   3067355 GATCCCATTTCTAGCCATTGTTCA
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17                57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1      562336 62472 +    730504 T
e saiBol1.JH378357             63964  0 -    242197 C
e otoGar3.GL873550             17838 8883 +  18854210 I
e aotNan1.NW_018509740v1      107251 1206 -    457564 I
e cebCap1.NW_016108310v1       94789 1246 +    106389 I
e macNem1.NW_012011356v1     2660201 143 -   2996164 I
e gorGor5.CYUI01015250v1     5790042  0 +   6154872 C
e panTro5.chr6              29750603  2 + 175400573 I

a score=6573.000000
s hg38.chr6_GL000254v2_alt    779977 3 +   4827813 GTG
s panPan2.chr6              29982075 3 + 173848474 GTG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74487856 3 + 122973662 GTG
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             141338328 3 + 170955103 CTG
i macFas5.chr4             C 0 T 6040
s cerAty1.NW_012002711v1      411790 3 +    766320 GTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28869953 3 -  71996105 GTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1       40518 3 +    290775 GTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1     2474572 3 -   3067355 GTG
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17                57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1      562336 62472 +    730504 T
e saiBol1.JH378357             63964 0 -    242197 C
e otoGar3.GL873550             17838 8883 +  18854210 I
e aotNan1.NW_018509740v1      107251 1206 -    457564 I
e cebCap1.NW_016108310v1       94789 1246 +    106389 I
e macNem1.NW_012011356v1     2660201 143 -   2996164 I
e rheMac8.chr4             142632878 6034 - 172585720 T
e gorGor5.CYUI01015250v1     5790042 0 +   6154872 C
e panTro5.chr6              29750603 2 + 175400573 I

a score=420000.000000
s hg38.chr6_GL000254v2_alt    779980 233 +   4827813 CTC-TCTATGCCCCACCATGCTGTCCTACTCTCTTCATCCTCTGCCTTCTCCCATGCTGTCTGCCTACCTATAGTCCCTCTTTCCCCACGCCCTGTTTTGTTCCTGTGCTGCCCCTTTCTCACCCTGTACTCTTTCACTTTGAAGTCACTGCCCCAGAACCTTCTCTTTCACTCCACGATTGGGTTGTGTTGACCCACTTGCACATCATATGTTTCTGAGGGCAGAAATGTTGG
s panPan2.chr6              29982078 233 + 173848474 CTC-TCTatgccccaccatgctgtcctactctcttcatcctctgccttctcccatgctgtctgcctacctatagtccctctttccccaagccctgttttgttcctgtgctgcccctttctcaccctgtactctttcactttgaagtcactgccccagaaccttctctttcactccacgattgggttgtgttgacccacttgcacatcatatgtttctgagggcagaaatgttgg
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74487859 234 + 122973662 CTCTTCTATGCCCCACCATGCTGTCCTACCCTCTTCATCCTCTGCCCTCTCCCATGCTGTCTGCCTACCTATAGTCCCTCTTTCCCCATGCCCTGTTTTTTTCCTGTGCTGTCCCTTTCTTACCTTGTACTCTTTCACTTTGAAGTCACTGCCCCAGAACCTTCTCTTTCACTCCACGATTGGGTTGTGTTGACCCACCTGTACATCATATGTTTCTGAGGGCAGAAATGTTTG
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002711v1      411793 232 +    766320 CTC-TCTATGCCCTGCcatgctgtcctactctcttcatcttctaccctctcccatgctgtctgcctacctatagtccctctttccccacgccctgtttttttcctgtgctgtccctttcttaccctgtactctttcacttagaagtcacagccccagaaccttctctttcactccacgattgggttgtgttgatccac-tgcacatcatatgtttctgagggcagaaatgttca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28869956 233 -  71996105 GTC-TCTATGCCCTGCCATGTTGTCCTACTCTCTTCATCTTCTACCCTCTCCCATGCTGTCTGCCTACCTATAGTCCCTCTTTCCCCACGCCCTGTTTTTTTCCTGTGCAGTCCCTTTCTTACCCTGTACTCTTTCACTTAGAAGTCACAGCCCCAGAACCTTCTCTTTCACTCCACGATTGGGTTGTGTTGATCCACTTGCACATCATATGTTTCTGAGGGCAGAAATGTTCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1       40521 233 +    290775 CTC-TCTATGCCCTGCCATGCTGTCCTACTCTCTTCATCTTCTACCCTCTCCCATGCTGTCTGCATACCTATAGTCCCTCTTTTCCCATGCCCTGTTTTTTCCCTGTGCTGTCCCTTTCTTACCCTATACCCTTTCACTTAGAAGTCACAGCCCCAGAACCTTCTCTTTCACTCCACGATTGGGTTGTGTTGATCCACTTGCACATCATATGTTTCTGAGGGCAGAAATGTTCA
i manLeu1.NW_012099233v1   C 0 I 3040
s colAng1.NW_012115566v1     2474575 232 -   3067355 CTC-TCTATGCCCTGCcatgctgtcctactctcttcatcttctaccctctcccatgctgtctgcctacctatagtccctctttccccatgccgt-tttttttcctgtgctgtcccttttttaccctgtactctttcacttagaagtcacagccccagaaccttctctttcactccacgattgggttgtgttgatccacttgcacatcatatgtttctgagggcagaaatgttca
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17                57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1      562336 62472 +    730504 T
e saiBol1.JH378357             63964   0 -    242197 C
e otoGar3.GL873550             17838 8883 +  18854210 I
e aotNan1.NW_018509740v1      107251 1206 -    457564 I
e cebCap1.NW_016108310v1       94789 1246 +    106389 I
e macNem1.NW_012011356v1     2660201 143 -   2996164 I
e macFas5.chr4             141338331 6040 + 170955103 T
e rheMac8.chr4             142632878 6034 - 172585720 T
e gorGor5.CYUI01015250v1     5790042   0 +   6154872 C
e panTro5.chr6              29750603   2 + 175400573 I

a score=721873.000000
s hg38.chr6_GL000254v2_alt    780213 388 +   4827813 CCCATAAttacagttgtctggttatgtctctgtctccctcactaacatgcaagccctacagaagcaggagctgtgtccagcatgttcaccagggtatcttccaagtgtatcacatgatactaggtgctccgtagacacctgctcaatgTCATATAGGTTCTTGGTCTTCTCTTCCAAATAaggtagaatagttatttttcattttacaggtgagaacattcaagttgaaagaaatgaagagaatatttgatgtcccgcaatacaggggaaagccgttactgcatcccaggaatgtttgaccataaagcccttccttgcccactaggccaggtatgtcccATCATAGAGCCCCTCACCCCACTTGCAGGTTACCCTTCCAAAGTGCTGT
s panPan2.chr6              29982311 388 + 173848474 cccataattacagttgtctggttatgtctctgtctccctcgctaacatgcaagccctacagaagcaggagctgtgtccagcatgttcaccagggtatcttccaagtgtatcacatgatactaggtgctccgtagacacctgctcaatgTCATATAGGTTCTTGGTCTTCTCTTCCAAATAaggtagaatagttatgtttcattttacaggtgagaacattcaagttgaaagaaatgaagagaatatttgatgtcccgcaatacaggggaaagccgttactgcatcccaggaatgtttgaccataaagcccttccttgcccactaggccaggtatgtcccATCATAGAGCCCTTCACCCCACTTGCAGGTTACCCTTCCAAAGTGCTGT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74488093 388 + 122973662 CCCATAAttacagttgtctggttatgtgtctgtttccctcgctaacatgcaagccctacagaagcaggagctgtgtccagcatgttcaccagggtatcttccaagtgtatcacatgatactaggtgctccgtagacacctgctcaatgTCATACAGGTTCTTGATCTTCTCTTCCAAATAaggtagaatagttatttttcattttacaggtgagaacattcaagttgaaagaaatgaagagaatatttgatgtcccgcaatacaggggaaagccgttactgcatcccaggaatgtttgaccataaagcccttccttgcccacttggccaggtatgtcccATCATAGAGCCCCTCACCCCACTTGCAGGTTACCCTTCCAAAGTGCTGT
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002711v1      412025 388 +    766320 cccataattacagttgtctggttatgtctctgtctccctcgctaacatgcaagccctgcagaagcaggagctgtgtcccgcatgttcaccagggtatcttccaggtgtatcacatgatactaggtgctccatagacacctgcttgatgtcatacaggttcttaatcttctcttccaaataaggtagaatagttatttttcattttacaggtgagaacattcaagttgaaagaaatgaagagaatgtttgatgttccgcaatacaggggaaagccattattagatcccaggaatgtttgaccataaagcccttcctGGCCCACTTGGCCAGGTATGTCCTATCATAGAGTCCCTCACCCCCCTTGCAGGTTACCCTTACAAAGTGCTGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28870189 388 -  71996105 CCCATAAttacagttgtctggttatgtctctgtctccctcgctaacatgcaagccctgcagaagcaggagctatgtcccgcatgttcaccagggtatcttccaagtgtatcacatgatactaggtgctccatagacacctgcttgatgTCATACAGGTTTTTAGTCTTCTCTCCCAAATAAGGTAGAATAGTTATTTTTCATTTTACAGGTGAGAACATTCAAGTTGAAAGAAATGAAGAGAATGTTTGATGTTCCGCAATACAGGGGAAAGCCATTATTAGATCCCAGGAATGTTTGACCATAAAGCCCTTCCTTGCCCACTTGGCCAGGTATGTCCTGTCATAGAGCCCCTCACCCCCCTTGCAGGTTACCCTTACAAAGTGCTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1       43794 388 +    290775 CCCATAAttacagttgtctggttatgtctctgtctccctcgctaacatgcaagccctgcagaagcaggagctgtgtcccgcatgttcaccagggcattttccaagtgtatcacatgatactaggtgctccatagacacctgctcgatgTCATACAGGTTCTTGGTCTTCTCTTCCAAATAaggtagaatagttatttttcattttgcgggtgagaacattcaagttgaaagaaatgaagagaatgtttgacgttctgcaatacaggggaaagccattattagatcccaggaatgtttgaccataaagcccttccttgcccacttgaccaggtatgtcccATCATAAAGCCCCTCACCCCCCTTGCAGGTTACCCTTACAAAGTGCTGT
i manLeu1.NW_012099233v1   I 3040 C 0
s colAng1.NW_012115566v1     2474807 388 -   3067355 cccataattacagttgtctggttatgtctctgtctccctcgctaacatgcaagctctgcagaagcaggagctgtgtcccgcatgttcaccagggtctcttccaagtgtatcacatgatactaggtgctccatagacacctgctCGATATCATACAGGTTCTTGGTCTTCTCTTCCAAATAaggtagaatagttatttttcattttacaggtgagaacattcaagttgaaagaaatgaagagaatgtttgatgttccgcaacacaggagaaagccattattggatcccaggaatgtttgaccataaagcccttccttgcccactTGGCCAGGTATGTCCCATCATAGAGCCCCTCACCCCCCTTGCAGGTTACCCCTACAAAGTGCTGT
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17                57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1      562336 62472 +    730504 T
e saiBol1.JH378357             63964   0 -    242197 C
e otoGar3.GL873550             17838 8883 +  18854210 I
e aotNan1.NW_018509740v1      107251 1206 -    457564 I
e cebCap1.NW_016108310v1       94789 1246 +    106389 I
e macNem1.NW_012011356v1     2660201 143 -   2996164 I
e macFas5.chr4             141338331 6040 + 170955103 T
e rheMac8.chr4             142632878 6034 - 172585720 T
e gorGor5.CYUI01015250v1     5790042   0 +   6154872 C
e panTro5.chr6              29750603   2 + 175400573 I

a score=19425.000000
s hg38.chr6_GL000254v2_alt    780601 10 +   4827813 TCCAAAAGAG
s panPan2.chr6              29982699 10 + 173848474 TCCAAAAAAG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74488481 10 + 122973662 TCCAAAAAAG
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4              29616902 10 - 170955103 TTCAACAAAA
i macFas5.chr4             I 90 C 0
s cerAty1.NW_012002711v1      412413 10 +    766320 TCCAACAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17             28870577 10 -  71996105 TCCAACAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1       44182 10 +    290775 TCCAACAAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1     2475195 10 -   3067355 TCCAACAAAA
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17                57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1      562336 62472 +    730504 T
e saiBol1.JH378357             63964  0 -    242197 C
e otoGar3.GL873550             17838 8883 +  18854210 I
e aotNan1.NW_018509740v1      107251 1206 -    457564 I
e cebCap1.NW_016108310v1       94789 1246 +    106389 I
e macNem1.NW_012011356v1     2660201 143 -   2996164 I
e rheMac8.chr4             142632878 6034 - 172585720 T
e gorGor5.CYUI01015250v1     5790042  0 +   6154872 C
e panTro5.chr6              29750603  2 + 175400573 I

a score=578109.000000
s hg38.chr6_GL000254v2_alt   780611 151 +   4827813 CTCaccgagacaaggtgatattggagaagtgatagacacatagatctatggaagacattgggaagcttgggaataaacccacacaattatagctaattattgacaaaggaacagcagcaattcaacagagaaaggaaggtcttttcaacag
s panPan2.chr6             29982709 150 + 173848474 CTCaccgagacaaggtgatattggagaagtgatagacacatagatctatggaagacattgggaagcttgggaataaacccacacaattatagctaattattgacaaaggaacagcagcaattcaacagagaaaggaaagtcttttcaac-g
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74488491 151 + 122973662 CTCaccgagacaaggtgatattggagaagtgatagacacatagatctatggaagacattgggaagcttgggaataaacccacacaattatggctaattattgacaaaggaacagcagcaattcaacagagaaaggaaggtcttttcaacaG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29952979 147 + 172585720 CTCaccgagacaaggtgatattggagaggagatagacacatagatctatggaagacattgggaagctcaggaat-aacccacacaattatggctaattattgacaaaggaacaacagcaattcaacagagaaagtaaggtctttt---cag
i rheMac8.chr4             I 143 C 0
s macFas5.chr4             29616912 147 - 170955103 CTCaccgagacaaggtgatattggagaggagatagacacatagatctatggaagacattgggaagctcaggaat-aacccacacaattatggctaattattgacaaaggaacaacagcaattcaacagagaaaggaaggtctttt---cag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2660344 147 -   2996164 CTCaccgagacaaggtgatattggagaggagatagacacatagatctatggaagacattgggaagctcaggaat-aacccacacaattatggctaattattgacaaaggaacaacagcaattcaacagagaaaggaaggtctttt---cag
i macNem1.NW_012011356v1   I 143 C 0
s cerAty1.NW_012002711v1     412423 151 +    766320 CTCaccgagacaaggtgatattggagaggagatagacacatagatctatggaagacattgggaagctcaggaataaacccacacaattatggctaattattgacaaaggatcaatagcaattcaacagagaaaggaaggtcttttcaacag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28870587 151 -  71996105 CTCACTGagacaaggtgatattggagaggagatagacacatagatctatggaagacattgggaagctcaggaataaacccacacaattatggctaattattgacaaaggaacaatagcaattcaaaagagaaaggaaggtcttttcaacag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      44192 151 +    290775 CTCACTGagacaaggtgatattggagaggagatagacacatagatctatggaagacattgggaagctcaggaatcaacccacacaattatggctaattattgacaaaggaacaacagcaattcaacagagaaaggaaggtcttttcaacag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2475205 151 -   3067355 CTCaccaagacaaggtgatattggagaggagatagacacatagatctatgaaagacattgggaagctcaggaataaacccacacaattatggctaattattgacaaaggaacaacagcaattcaacagagaaaggaaggtcttttcaacag
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964   0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e gorGor5.CYUI01015250v1    5790042   0 +   6154872 C
e panTro5.chr6             29750603   2 + 175400573 I

a score=164347.000000
s hg38.chr6_GL000254v2_alt   780762 65 +   4827813 tgttaaaacaattgg-acagtctttttttatt------ttttagtttttggttttgtttttgtttttaagac
s panPan2.chr6             29982859 63 + 173848474 tgttaaaacaattggtacagtc-ttttttgtt------ttttgg-ttttggttttgtttttg-ttttaagat
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             29953126 65 + 172585720 tgttaaaacaattgg-acagtctttttttgtt------ttttggtttttggttttgcttttgtttttaagac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29617059 65 - 170955103 tgttaaaacaattgg-acagtctttttttgtt------ttttggtttttggttttgcttttgtttttaagac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2660491 65 -   2996164 tgttaaaacaattgg-acagtctttttttgtt------ttttggtttttggttttgcttttgtttttaagac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     412574 71 +    766320 tgttaaaacaattgg-acagtctttttttgttttttggttttggtttttgtttctgtttttgtttttaagac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28870738 55 -  71996105 tattaaaacaattgg-acagtctttctt----------------tttttgtttttgtttttgtttttaagac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      44343 65 +    290775 tgttaaaacaattgg-acagtctttttttggt------ttttgatttttggttttgtttttgtttttaagac
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2475356 66 -   3067355 tgttaaaacaattgg-aGAGTCtttttttgttt-----ttttggtttttggttttgtttttgtttttAAGAC
i colAng1.NW_012115566v1   C 0 M 1375
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964  0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e nomLeu3.chr1a            74488642  0 + 122973662 C
e gorGor5.CYUI01015250v1    5790042  0 +   6154872 C
e panTro5.chr6             29750603  2 + 175400573 I

a score=3267799.000000
s hg38.chr6_GL000254v2_alt   780827 1355 +   4827813 ggagtcttgctctgtcatccaggctggagtgcagtggcaatctcggttcactgcaacctccgcctcctgggttcaagcaattctctgcctcagcgtcccaagtagctgggattacaggcgcctgccaccaggcccggctaa-ttttttggatttttagtagagatggggtttcaccatcttggccagtctggtcttgaactcctgacctcgtgatccaccagcctcggcctcccaaagtgctgggattacaggcgtgagccacggcacccagtcaacaattggacagtcttatccagaataatgaatcttgatctaaacctcctaatttacatgtaacaaattgcattagttacaatattaactcaaaatggatcgtagatctaagcataaaatataaaaatatataatgcttagactaaaacataggagaaaaaatttttccaatctagttaggcaaagagttcatagatgtgacactgaaagcaaagtatagcaaaaggcaaaaataaattcaataagttgtacttcatcaaaattataacttttgttctgtaaaatacattgttaagtgaatgaaaagatgagctgtagatttggagaaaatattttaaaaaagcacacgtctgacaaggactcatattcagaacacttaagaatgctcaagccaacccaattaaaacaatcaattcaattcaaaaacaagaaaacaaaaccagtttcagaaatgagacaaagactcagacataaacttcagcaacgagggcacgcagcaggcagagcagcccagacaaggtactcaatactatgactcactaggggactacaaatcaaaaccacagtgagatcctgttacacacccattagaatgtctaaaataaaaaccacagacactagtagtgccggcgaggatgtggagcaacagga--ctaacacatcgctgccaggaaagcaaaatggcacagctgcactggaaagcaatttgtttcttgtaaggttacacatatacttaccacgggaaccagcaatctcagccctggtatttctcctaaagacataaaagcttatgtccacacagacacccgtacacaaactgttataaaagctccagtcataataggcaaaacccagaagcaaactaaatgtcctttaacaggtgaacatgtaaacaaactatggtgcatccatacaatggagtactgttcagc---aaaaaaaaaa--aaAATACTACACTGTATACACACACAGGTACACACACATATATCTCCTAATGttagcagaatttttttaatgtgtaatacagcattgtttactataggtaggatgttatgcatcgaatctctagaatttaatcatcttccat
s panPan2.chr6             29982922 1360 + 173848474 ggagtcttgctctgtcatccaggctggagtgcagtggcaatctcagttcactgcaacctccgcctcctgggttcaagcaattctctgcctcagcgtcccacgtagctgggattacaggcgcctgccaccaggcccggctaa-ttttttggatttttagtagagatggggtttcaccatcttggccagtctggtcttaaactcctgacctcgtgatccaccggcctcggcctcccaaagtgctgggattacaggcatgagccacggcacccagtcaacaattggacagtcttatccagaataatgaatcttgatctaaacctcctaatttacatgtaacaaattgcattagttacaatattaactcaaaatggatcgtagatctaagcataaaatataaaaatatataatgcttagactaaaacataggaaaaaaagtttttccaatctagttaggcaaagagttcatagatgtgacactgaaagcaaagtaaagcaaaaggcaaaaaaaaattcaataagttgtacttcatcaaaattataacttttgttctgtaaaatacattgttaagtgaatgaaaagatgagctgtagatttggagaaaatattttaaaaaatcacacgtctgacaaggactcatattcagaacacttaagaatgctcaagccaacccaattaaaacaatcaatccaattcaaaaacaagaaaacaaaaccagtttcagaaatgagacaaagactcagacacaaacttcagcaacgagggcacgcagcaggcagagcagcccagacaaggtactcaatactatgactcactaggggactacaaatcaaaaccacagtgagatcctgttacacacccattagaatgtctaaaataaaaaccacagacactagtagtgccggcgaggatgtggagcaacaggactctaacacatcgctgccaggaaagcaaaatggcacagctgcactggaaagcaatttgtttcttgtaaggttacacatatacttaccacgggaaccagcaatctcagccctggtatttctcctaaagacataaaagcttatgtccacacagacacccgtacacaaactgttatgaaagctccagtcataataggcaaaacccagaagcaaactaaatgtcctttaacaggtgaacgtgtaaacaaactatggtgcatccatacaatggagtgctgttcagcaaaaaaaaaaaaa--aaaatactACACTGTATACACACACAGGTACACACACATATATCTCCTAATGttagcagaatttttttaatgtgtaatacagcattgtttactataggtaggatgttatgcatcgaatctctagaatttaatcatcttccat
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             29953191 1353 + 172585720 ggagtcttgctctgctgtccaggctggactgcagtggtgatctcagttcactgcaacctccacctcctgggttcaaacaattctatgcttcagtctcccaagtagatgagattacaggcgcccaccaccatgtccggctaatttttttggatttttagtagagacgggatttcatcatcttggccaggctggtcttgaactcctgacctcgtgatccacccaccttagcctcccaaagtgctgggattacaggcgtgagccaccacacccagtcaacagttggacagtcttatcctgaataatgaatcttgatctaaacctcctaatttacatgtaataaattacattagttacagtattaactcaaaatggatcgtagatctaggcataaaatataaatatatataatgcttaggttaaaacataggagaaaaaattttaccaatctagttaggcaacgagttcatagatgtgacactgaaagcaaagtacatcaaaaggcaaaaaaaaa-tcaataagttgtacttcatcaaaattataacttttgttctgcaaaatacattggtaagtgaatgaaaagatgagctgtagatttgaagaaaatatttt-aaaaatcacacgtctgacaaggactcatattcagaacacttaagaatgctcaagccaacccaattaaaacaatcaatccaattcaaaaacaggaacacaaaaccagtttcggaaatgagacgaagactcagacacaaacttcagcaatgaggacacgcagcaggcagagcagcccagacaagatacccagtactgcgactcaccaggggactgcaaatcaaaaccacagtgagatcccactacacgcccattagaatgtctaaaataaaaaccacagacac---tattgctgacgaggatgtggagcaacaggactctaacacaccgctgccaggaaggcaaaatggcacaactgcactggaaagcagtttctttcttgtagggttacacatatacttaccacaggaaccagcagtctcagccctggtatttctcctaaagacataaaagcttatgtccacacagacacctgcacacaaactgttataaaagctccagtcataataagcaaaacctagaagcaaactaaatgtcctttaacaggtgaacgtgt-aacaaactatggtgcatccatacaatggagtactgttcagtaacaacaacaa----aaaaagctacactgcatacacacaCAGGTACACATACATATATCTCCTAATGTCAGCTGaatttttttaatgtataatatggcattgtttactataggtaggatgttatgcattgaatctctagaatttaatcatcttccat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29617124 1356 - 170955103 ggagtcttgctctgctctccaggctggactgcagtggcaatctcagttcactgcaacctccacctcctgggttcaaacaattctatgcttcagtctcccaagtagatgagattacaggcgcccaccaccatgtccggctaatttttttggatttttagtagagacgggatttcatcatcttggccaggctggtcttgaactcctgacctcgtgatccacccaccttagcctcccaaagtgctgggattacaggcgtgagccaccacacccagtcaatagttggacagtcttatcccgaataatgaatcttgatctaaacctcctaatttacatgtaataaattacattagttacaatattaactcaaaatggatcgtagatctaggcataaaatatacatatatataatgcttaggttaaaacataggagaaaaaattttaccaatctagttaggcaaagagttcatagatgtgacactgaaagcaaagtacatcaaaaggc-aaaaaaaa-tcaataagttgtacttcatcaaaattataacttttgttctgcaaaatacattgttaagtgaatgaaaagatgagctgtagatttgaagaaaatatttt-aaaaatcacacgtctgacaaggactcatattcagaacacttaagaatgctcaagccaacccaattaaaacaatcaatccaattcaaaaacaggaacacaaaaccagtttcggaaatgagacgaagactcagacacaaacttcagcaatgaggacacgcagcaggcagagcagcccagacaagatacccagtaccgcgactcaccaggtgactacaaatcaaaaccacagtgagatcccactacacgcccattagaatgtctaaaataaaaaccacagacac---tattgctgacgaggatgtggagcaacaggactctaacacaccgctgccaggaaggcaaaatggcacaactgcactggaaagcagtttctttcttgtagggttacacatatacttaccacaggaaccagcagtctcagccctggtatttctcctaaagacataaaagcttatgtccacacagacacctgcacacaaactgttataaaagctccagtcataataagcaaaacctagaagcaaactaaatgtcctttaacaggtgaacgtgt-aacaaactatggtgcatccatacaatggagtactgttcagtaacaacaaCAACAACAAAAAGCTACACTGTATACACACACAGGTACACATACATATATCTCCTAATGttagcagaatttttttaatgtataatatggcattgtttactataggtaggatgttatgcattgaatctctagaatttaatcatcttccat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2660556 1354 -   2996164 ggagtcttgctctgctatccaggctggactgcagtggcgatctcagttcactgcaacctccacctcctgggttcaaacaattctatgcttcagtctcccaagtagatgagattacaggcgccctccaccatgtccggctaatttttttggatttttagtagagatgggatttcatcatcttggccaggctggtcttgaactcctgacctcgtgatccacccaccttagcctcccaaagtgctgggattacaggcgtgagccaccacacccagtcaacagttggacagtcttatcccgaataatgaatcttgatctaaacctcctaatttacatgtaataaattacattagttacaatattaactcaaaatggatcgtagatctaggcataaaatataaatatatataatgcttaggttaaaacataggagaaaaaattttaccaatctagttaggcaaagagttcatagatgtgacactgaaagcaaagtacatcaaaaggc-aaaaaaaa-tcaataagttgtacttcatcaaaattataacttttgttctgcaaaatacattgttaagtgaatgaaaagatgagctgtagatttgaagaaaatatttt-aaaaatcacacgtctgacaaggactcatattcagaacacttaagaatgctcaagccaacccaattaaaacaatcaatccaattcaaacacaggaacacaaaaccagtttcggaaatgagacgaagactcagacacaaacttcagcaatgaggacacgcagcaggcagagcagcccagacaagatacccagtactgcgactcaccaggggactgcaaatcaaaaccacagtgagatcccactacacgcccattagaatgtctaaaataaaaaccacagacac---tattgctgacgaggatgtggagcaacaggactctaacacaccgctgccaggaaggcaaaatggcacaactgcactggaaagcagtttctttcttgtagggttacacatatacttaccacaggaaccagcagtctcagccctggtatttctcctaaagacataaaagcttatgtccacacagacacctgcacacaaactgttataaaagctccagtcataataagcaaaacctagaagcaaactaaatgtcctttaataggtgaacgtgt-aacaaactatggtgcatccatacaatggagtactgttcagtaacaacaaCAACA--AAAAAGCTACACTGTATACACACACAGGTACACATACATATATCTCCTAATGTTAGCTGaattttttaaatgtataatatggcattgtttactataggtaggatgttatgcattgaatctctagaatttaatcatcttccat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     412645 1351 +    766320 gaagtcttgctctgctgtccaggctggggtgcagtggcgatctcagttcactgcaacctccacctcctgggttcaaa-----ctatgcttcagtctcctaagtagctgagattacaggtgcccaccaccatgcccggctaatttttttggatttttagtagagacgggatttcatcatcttggccaggctggtcttgaactcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggtgtgagccaccacacccagtcaacagttagacagtcttatcccgaataatgaatcttgatctaaacctcctaatttacatgtaataaattacattagttacaatattaactcaaaatggatcgtagatctaggcataaaatataactatatataatgcttagattaaaacataggagaaaaaattttaccaatctagttaggcaaagagtttatagatgtgacactgaaagcaaagtacatcaaaaggc-aaaaaaaa-tcagtaagttgtacttcatcaaaattataacttttgttctgcaaaatacattgttaagtgaatgaaaagatgagctgtagatttgaagaaaatatttt-aaaaatcacacgtctgacaaggactcatattcagaacacttaagaaccctcaagccaacccaattaaaacaatcaatccaattcaaaaacaggaacacaaaaccagtttcagaaatgagacgaagactcagacacaaacttcagcaatgaggacacgcagcaggcagagcagcccagacaagatacccaatactgtgactcaccaggggactgcaaatcaaaaccacagtgagatcccactacacgcccattagaatgtctaaaataaaaaccacaggcac---tattgctgacgaggatgtggagcaacaggactctaacataccgctgccaggaaggcaaaatggcacagctgcacgggaaagcagtttgtttcttgtagggctacacatgtacttaccacaggaaccagcagtctcagtcctggtatttctcctaatgacataaaagcttatgtccacacagacacctgcacacaaactgttataaaagctccagtcataataggcaaaacctagaagcaaactaaatgtcctttaacaggtgaacgtgt-aacaaactatggtacatccatacaatggagtactgttcagcaacaacaaCAACAACAAAAAGCTACACTGTATACACACACAGGTACACATACATATATCTCCTAATGTTAGCCGaatttttttaatgtataatatggtattgtttactataggtaggatgttatgcattgaatctctagaatttaatcatcttccat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28870793 1352 -  71996105 aaagtcttgctctgctgtccaggctggagtgcagtggcgatctcagttcactgcaacctccacctcctgggttcaaacaattctatgcttcagtctcccaagtagctgaaattacaggcacccaccaccatgcccggctaatttttttggatttttagtagagacgggatttcatcatcttggccaggctggtcttgaactcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggtgtgagccaccacacccagtcaacagttggacagtcttatccggaataatgaatcttgatctaaacctcctaatttccatgtaataaattatattagttacaatattaactcaaaatggatcgtagatctaggcataaagtataaatatacataatgcttagattaaaacataggagaaaaaattttaccaatctagttaggcaaagagttcatagatgtgacactgaaagcaaaatacatcaaaaggcaaaaaaaaa-tcaataagttgtacttcatcaaaattataacttttgttctgcaaaatgcattgttaagtgaatgaaaagatgaactgtagatttgaagaaaatatttt-aaaaatcacacatctgacaaggactcatattcagaacacttaagaacgctcaagccaacccaattaaaacaatcaatccaattcaaaaacaggaacacaaaactggtttcggaaatgagacgaagactcagacacaaacttcagcaatgaggacacgcagcaggcagagcagcccagacaagatacccagtactgtgactcgccagggcactgcaaatcaaaaccacagtgagatcccactacgcgcccattagaatgtctaaaataaaaaccacagacac---tattgttgacgaggatgtggagcaacaggactctaacacaccgctgccaggaaggcaaaatggcacagctgcacgggaaagcagtttgtttcttgtagggttacacatatacttaccacaggaaccagcagtctcagccctgctatttctcctaaagacataaaagcttatgtccacacagacacctgcacacaaactgttataaaagctccagtcataataggcaaaacctagaagcaaactaaatgtcctttaacaggtgaacgtgt-aacaaactatggcgcatccatacaatggagtactggtcagtaacaaca-----aaaaaaaagctaCACTGTATACACACACAAGTACACATACATATATCTCCTAATGttagcagaatttttttaatgtataatatggcattgtttactataggtaggatgttatgcactgaatctctagaatttaatcatcttccat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      44408 1357 +    290775 gaagtcttgctctgccgtccaggctggagtgcagtggcgatctcagttcactgcaacctccacctcctgggttcaaacaattctatgcttcagtctcccaagtagctgagattacaggcgcccaccaccatggctggctaatttttttggatttttagtagagacgggatttcatcatcttggccaggctggtcttgaactcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggtaagagccaccacacccagtcaacagttagacagtcttatcccgaataatgaatcttgatctaaacctcctaatttacatgtaataaattacattagttacaatattaactcaaaatggatcgtagatctaggcataaaatataactatatataatgcttagattaaaacataggagaaaaaattttaccaatctagttaggcaaagagttcatagatgtgacactgaaagcaaagtacatcaaaaggcaaaaaaaaa-tcagtaagttttacttcatcaaaattataacttttgttctgcaaaatacattgttaagtgaatgaaaagatgagctgtagatttgaagaaaatatttt-aaaaatcacacgtctgacaaggactcatattcagaacacttaagaacgctcaagccaacccaattaaaacaatcaatccaattcaaaaacaggaacacaaaaccagtttcggaaatgagacgaagactcagacacaaacttcagcaatgaggacacgcagcaggcagagcagcccagacaagatacccaatactgtgactcaccaggggactgcaaatcaaaaccacagtgagatcccactacacgcccattagaatgtctaaaataaaaaccacagacac---tattgctgacgaggatgtggagcaacaggactctaacacaccgctgccaggaaggcaaaatggcacagctgcacgggaaagcagtttgtttcttgtagggctacacatgtacttaccacaggaaccagcagtctcagtcctggtatttctcctaatgacataaaagcttatgtccacacagacacctgcacacaaactgttataaaagctccagtcataataagcaaaacctagaagcaaactaaatgtcctttaacaggtgaacgtgt-aacaaactatggtacatccatacaatggagtactgttcagcaacaacaaCAACAACAAAAAGCTACACTGTATACACACACAGGTacacatacacatatctcctaatgttagccgaatttttttaatgtataatatggtattgtttactataggtaggatgttatgcattgaatctctagaatttaatcatcttccat
i manLeu1.NW_012099233v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964    0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e colAng1.NW_012115566v1    2475422 1375 -   3067355 M
e nomLeu3.chr1a            74488642    0 + 122973662 C
e gorGor5.CYUI01015250v1    5790042    0 +   6154872 C
e panTro5.chr6             29750603    2 + 175400573 I

a score=826219.000000
s hg38.chr6_GL000254v2_alt   782182 277 +   4827813 acccgaaattttacacaagctgaaaagcaactcctcatgtccctcttctcacctcccagtaacccccattctacattctgcttctatgagtttaactattttaggtactttatctcagtggaattatacagtatatgtctttttgtgactggcttgtctcacttagcacagcgtcttccaggttcatccatgttgcaaatggcaggatttccttcttttgcatggctggataatattccattgtgaggatagcctccatttcctttcatctctcaat
s panPan2.chr6             29984282 277 + 173848474 acccgaaattttacacaagctgaaaagcaactcctcatgtccctcttctcacctcccagtaacccccattctacattctgcttctatgggtttaactattttaggtactttatctcagtggaattatacagtatatgtctttttgtgactggcttgtctcacttagcacagcgtcttccaggttcatccatgttgcaaatggcaggatttccttcttttgcatggctggataatattccattgtgaggatagcctccatttcctttcatctctcaat
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             29954544 270 + 172585720 acccgaaattttacaaaagctgaaaagcaactcctcatg--tgtcttctcatttcccggtaacccccattctacattctgcttctatgggtttaactattttaggtactttatctgagtggaattatgcagtgtatgtctttttgtgactggcttgtctc----agcacagtgtcctccaggttcatccatgttgcaaacggcaggatttccttcttttgcctggc-gaataatattccattgtgagaatagaccccatttcctttcatctctcaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29618480 270 - 170955103 acccgaaattttacaaaagctgaaaagcaactcctcatg--tgtcttctcatttcccggtaacccccattctacattctgcttctatgggtttaactattttaggtactttatctgagtggaattatgcagtgtatgtctttttgtgactggcttgcctc----agcacagtgtcctccaggttcatccatgttgcaaacggcaggatttccttcttttgcctggc-gaataatattccattgtgagaatagaccccatttcctttcatctctcaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2661910 270 -   2996164 acccgaaattttacaaaagctgaaaagcaactccttatg--tatcttctcatttcccggtaacccccatgctacattctgcttctatgggtttaactattttaggtactttatctgagtggaattatgtagtgtatgtctttttgtgactggcttgtctc----agcacagtgtcctccaggttcatccatgttgcaaacggcaggatttccttcttttgcctggc-gaataatattccattgtgagaatagaccccatttcctttcatctctcaag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     413996 270 +    766320 acccgaaattttacaaaagctgaaaagcaactcctcatg--tctcttctcacttcccggtaacccccattctacattctgcttctatgggtttaactattttaggtactttatctgagtggaattatgcagtgtatgtctttttatgactggcttgtctc----agcacagtgtcctccaggtttatccatgttgcaaacggcaggattttcttcttttgcctggc-gaataatattccattgtgagaatagaccccatttcctttcatctctcaat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28872145 273 -  71996105 acccgaaattttacataagctgaaaagcaactcctcatgtctctcttctcacttcctggtaacccccattctacattctgcttctatgggtttaactattttaggtactttatctgagtggaattatgcagtgtatgtctttttgtgactggcttgtctc----agtacagtgtcctccaggttcatccatgttgcaaacagcaggatttccttcttttgcctggctgaataatattccactgtgagaatagaccccatttcctttcatctctcaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      45765 270 +    290775 acccgaaattttacaaaagctgaaaagcaactccttatg--tctcttctcacttcccggtaacccccattctacattctgcttctatgggtttaactattttaggtactttatctgagtggaattatgcagtgtatgtctttttatgactagcttgtctc----agcacagtgtcctccaggtttatccatgttgcaaacggcaggattttcttcttttgcctggc-gaataatattccattgtgagaatagaccccatttcctttcatctctcaat
i manLeu1.NW_012099233v1   C 0 I 2781
s colAng1.NW_012115566v1    2476797 273 -   3067355 ACCCAaaattttacataagctgaaaagcaactcctcatgtctctcttctcacttcccggtaacccccattctacattctgcttctatgggtttaactattttaggtattttatctgaggggaattatacagtgtatgtctttttgtgactgacttgtctc----agtacagtgttctccaggttcatccatgttgcagacggcaggatttccttcttttgtatggctgaataatattccactgtgagaatagaccccatttcctttcatctctcaat
i colAng1.NW_012115566v1   M 1375 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964   0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e nomLeu3.chr1a            74488642   0 + 122973662 C
e gorGor5.CYUI01015250v1    5790042   0 +   6154872 C
e panTro5.chr6             29750603   2 + 175400573 I

a score=1040030.000000
s hg38.chr6_GL000254v2_alt   782459 417 +   4827813 ggacatgaggttgtttccacatggctgtGTGGGAGCAAGGGGGTTTCTTAGCCACTGGAGCGTCCCATTGGGATGGGGCACTGGTGGTGACCCCTAAGCAGGGATGTGCCCTAATGGACTTGCATCTGATAGGGTCTCCAGGCCACTATGGCCCCATGCCTGGGTGAGGTTAAGAGTTAAAGAGTAGAAAACAGGAGGCCAGT-G---------AGGGGGCATTTTTGGGCCCATGGGAAGGTTTCTGAGGAGATGGAAGGGCTGCAGGTATAGGTTCCCAATATGTCCCCACCCCAGTTCAATTTCAATGACCAAGGGAGATAGCAGAGGTAAAGAAAACAGATAAGAGGGGGTCACCTGACACCTGGTGGACAGAAGCTGACATCCAAGAGGTGATTCCACCCACCTCCCTCCTGAGCTTCCTCC
s panPan2.chr6             29984559 417 + 173848474 ggacatgaggttgtttccacatGGCTGTGTGGGAGCAAGGGGGTTTCTTAGCCACTGGAGCGTCCCATTGGGATGGGGCACTGGTGGTGACCCCTAAGCAGGGATGTGCCCTAATGGACTTGCATCTGATAGGGTCTCCAGGCCACTATGGCCCCATGCCTGGGTGAGGTTAAGAGTTAAAGAGTAGAAAACAGGAGGCCAGT-G---------AGGGGGCATTTTTGGGCCCATGGGAAGGTTTCTGAGGAGATGGAAGGGCTGCAGGTATAGGTTCCCAATATGTCCCCACCCCAGTTCAATTTCAATGACCAAGGGAGATAGCAGAGGTAAAGAAAACAGATAAGAGGGGGTCACCTGACACCTGGTGGACAGAAGCTGACATCCAAGAGGTGATTCCACCCACCTCCCTCCTGAGCTTCCTCC
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             29954814 417 + 172585720 ggacatgaggttgtttccacatggctgtgtgggagcaatgGGGTTTCTTAGCCATTGGAGCGTCCCATTGGGATGGGGCACTGGTGGTGACCCCTAAGCAGGGATGTGCCCTAATGGACTTACATCTGATGAGGTCTCCAAGCGACTATGGCCCCATGCCTGGGTGAGGTTAAAAGTTAAAGCGTAGAAAACAGAAGGCCAGT-G---------TGGGGGCATTTTTGGGCCCATGAGAAGGTTTCTGAGGGGATGGAAGGGCTGCAGGTATAGGTTCCCAACATGTCCCCACCCCAATTCAATTTCAATGACCAAGGGGGATAGCAGAGGTAAAGAAAACAGACAAGAAGCGGTCACCTGACACCTGGTGGACGGAAGCTGACATCCAAGAGGTGATTCCACCCACCTCCCTCCTGAGCTTCCTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29618750 417 - 170955103 ggacatgaggttgtttccacatggctgtgtgggagcaatgGGGTTTCTTAGCCATTGGAGCGTCCCATTGGGATGGGGCACTGGTGGTGACCCCTAAGCAGGGATGTGCCCTAATGGACTTACATCTGATGAGGTCTCCAAGCGACTATGGCCCCATGCCTGGGTGAGGTTAAAAGTTAAAGCGTAGAAAACAGAAGGCCAGT-G---------GGGGGGCATTTTTGGGCCCATGAGAAGGTTTCTGAGGGGATGGAAGGGCTGCAGGTATAGGTTCCCAACATGTCCCCACCCCAATTCAATTTCAATGACCAAGGGGGATAGCAGAGGTAAAGAAAACAGACAAGAAGCGGTCACCTGACACCTGGTGGACGGAAGCTGACATCCAAGAGGTGATTCCACCCACCTCCCTCCTGAGCTTCCTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2662180 418 -   2996164 ggacatgaggttgtttccacatggctgtgtgggagcaatgGGGTTTCTTAGCCATTGGAGTGTCCCATTGGGATGGGGCACTGGTGGTGACCCCTAAGCAGGGATGTGCCCTAATGGACTTACATCTGATGAGGTCTCCAGGCGACTATGGCCCCATGCCTGGGTGAGGTTAAAAGTTAAAGCGTAGAAAACAGAAGGCCAGTGG---------GGGGGGCATTTTTGGGCCCATGAGAAGGTTTCTGAGGGGATGGAAGGGCTGCAGGTATAGGTTCCCAACATGTCCCCACCCCAATTCAATTTCAATGACCAAGGGGGATAGCAGAGGTAAAGAAAACAGACAAGAAGCGGTCACCTGACACCTGGTGGACGGAAGCTGACATCCAAGAGGTGATTCCACCCACCTCCCTCCTGAGCTTCCTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     414266 411 +    766320 ggacatgaggttgtttccacatggctgtgtgggagcaatgGGGTTTCTTAGCCATTGGAGCGTCCCATTGGGATGGGGCACTGGTGATGACCCCTAAGCAGGGATGTGCCCTAATGGACTTACATCTGATGGGGTCTCCAGGCGACTATGGCCCCATGCCTGGGTGAGGTTAAAAGTTAAAGCGTAGAAAACAGAAGGCCAGG----------------GCATTTTTGGGCCCATGAGAAGGTTTCTGAGGGGATGGAAGGGCTGCAGGTATAGGTTCCCAACATGTCCCCACCCCAGTTCAATTTCAATGACCAAGGGGGATAGCAGAGGTAAAGAAAACAGACAAGAAGCGGTCACCTGACACCTGGTGGACGGAAGCTGACATCCAAGAGGTGATTCCACCCACCTCCCTCCTGAGCGTCCTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28872418 418 -  71996105 ggacatgaggttgtttccacatggctgtgtgggagcaatgGAGTTTCTTAGCCATTGGAGCGTCCCATTGGGATGGGGCACTGGTGGTGACCCCTAAGCAGGGATGTGCCCTAATGGACTTACATCTGATGGGGTCTCCAGGCGACTATGGCCCCATGCCTGGGTGAGGTTAAAAGTTAAAGCATAGAAAACAGAAGGCCAGTAG---------GGGGGGCATTTTTGGGACCATGGGAAGGTTTCTGAGGGGATGGAAGGGCTGCAGGCATATGTTCCCAACATGTCCCCACCCCAGTTCAATTTCAATGACCAAGGGGGATAGCAGAGGTAAAGAAAACAGACAAGAAGGAGTCACCTGACACCTGGTGGACAGAAGGTGACATCCAAGAGGTGATTCCACCCACCTCTCTCCTGAGCTTCCTCC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2477070 426 -   3067355 ggacatgaggttgtttccacatggctgtgtgggagcaatgGGGTTTCTTAGCCATTGGAGCGTCCCATTGGGATGGGGCACTGGTGGTGACCCCTAAGCAGGGATGTGCCCTAATGGACTTACATCTGATGGGGTCTCCAGGCGACTATGGCTCCATGCCTGGGTGAGGTTAAAAGTTAAA-CACAGAAAACAGAAGGCCAGTGGGTGGGGGGTGGGGGGCATTTTTGGGCCCATGGGAAGGTTTCTGAGGGGATGGAAGGGCTGCAGGTATAGGTTCCCAACATGTCCCCACCCCAGTTCAATTTCAATGACCAAGGGGGGTAGCAGAGGTAAAGAAAACAGACAAGAAGGGGTCACCTGACACCTGGTGGACAGAAGCTGACATCCAAGAGGTGATTCCACCCACCTCCCTCCTGAGCTTCCTCC
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964   0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e manLeu1.NW_012099233v1      46035 2781 +    290775 I
e nomLeu3.chr1a            74488642   0 + 122973662 C
e gorGor5.CYUI01015250v1    5790042   0 +   6154872 C
e panTro5.chr6             29750603   2 + 175400573 I

a score=781996.000000
s hg38.chr6_GL000254v2_alt   782876 254 +   4827813 TTCCTCAGGTCCagttaggcaggggacctggtcagtggtgcctagtcacctgccactgtgtgacctcagacaggagatttgtcctgggagcctccttcccttcatctataaa-agg-ggaatGGACACAGCAGCCCAGAAGGCTTCGAGGAGGAGGAGGACGTGAGAAGGTGTGCTGAATCCTGCCCTGCTGAGCATGTAGGCCT-AAAATTTTACACACAAACTGAGTCCCTATGAGGAAAGGGCAAGCCCTCTGC
s panPan2.chr6             29984976 252 + 173848474 TTCCTCAGGTCCagttaggcaggggacctggtcagtggtgcctagtcacctgccactgtgtgacctcagacaggagatttgtcctgggagcctctttccctccatctataaa-agg-ggaatGGACACAGCAGCCCAGAAGGCTTC---GGGGAGGAGGATGTGAGAAGGTGTGCTGAATCCTGCCCTGCTGAGCAGGCAGGCCTAAAAACTTTACACACAAACTGAGTCCCTATGAGGAAAGGGCAAGCCCTCTGC
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             29955231 251 + 172585720 TTCCTCAGGTCCagttaggcaggggacctggtcagcggtgcctggtcacctgccactgtgtgacctcaggcaggagatttttccctggagcctccttccctccatctacaaa-ggg-ggaCTGGACACAGCAGCCCAGAAGGCTTC---TGGGAGGAGGACGTGAGAAGGTGTGCTGAATCCCGCCCTGCTGAGCAGGCAGGCCT-AAAATTTTACACACAAGCTGAGTCCCTGTGAGGAAGCGGTAAGCCCTCTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29619167 251 - 170955103 TTCCTCAGGTCCagttaggcaggggacctggtcagtggtgcctggtcacctgccactgtgtgacctcaggcaggagatttttccctggagcctccttccctccatctataaa-ggg-ggaCTGGACACAGCAGCCCAGAAGGCTTC---TGGGAGGAGGACGTGAGAAGGTGTGCTGAATCCCGCCCTGCTGAGCAGGCAGGCCT-AAAATTTTACACACAAGCTGAGTCCCTGTGAGGAAGCGGTAAGCCCTCTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2662598 251 -   2996164 TTCCTCAGGTCCAGTTAGGCAGGGGACCTGGTCAGTGATGCCTGGTCACCTGCCACTGTGTGACCTCAGGCAGGAGATTTTTCCCTGGAGCCTCCTTCCCTCCATCTACAAA-GGG-GGACTGGACACAGCAGCCCAGAAGGCTTC---TGGGAGGAGGACGTGAGAAGGTGTGCTGAATCCCGCCCTGCTGAGCAGGCAGGCCT-AAAATTTTACACACAAGCTGAGTCCCTGTGAGGAAGCGGTAAGCCCTCTGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     414677 249 +    766320 TTCCTCAGGTCCagttaggcaggggacctggtcagtggtgcctggtcacctgccactgtgtgacctcaggcaggagacttttccctggagcctccttccctccatctataaagggg-ggaCTGGACACAGCAGCCCAG-AGGCTTC---TGGGAGGAGGACGTGAGAAGGTGTGCTGAATCCCGCCCTGCTGAGCAGGCAGGCCT-AAAATTTT--ACACAAACTGAGTCCCTGTGAGGAAGGGGCAAGCCCTCTGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28872836 249 -  71996105 TTCCTCAGGTCCagttaggcaggggacctggtcagtggtgcctggtcacctgccactgtgtgacctcaggcaggagatttttccttggagcctccttccctccatctataaa-ggg-ggaCTGGACACAGCAGCCCAGAAGGCTTC---TGGGAGGAGGACGTGAGAAGGTGTGCTGAATCCTGCCCTGCTGAGCAGGCAGGCCT-AAAATTTT--ACACAAACTGAGTCCCTGTGAGGAAGCGGCAAGCCCTCTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      48816 252 +    290775 TTCCTCAGGtgcagttaggcaggggacctggtcagtggtgcctggtcacctgccactgtgtgacctcaggcaggagatttttccctggagcctccttccctccatctataaa-gggaggaCTGGACACAACAGCCCAGAAGGCTTC---TGGGAGGAGGACGTGAGAAGGTGTGCTGAATCCTGCCCTGCTGAGCAGGCAGGCCT-AAAATTTTACACACAAACTGAGTCCCTGTGAGGAAGGGGCAAGCCCTCTGC
i manLeu1.NW_012099233v1   I 2781 C 0
s colAng1.NW_012115566v1    2477496 251 -   3067355 TTCCTCAGGTCCagttaggcaggggacctggtcagtggtgcctggtcacctgccactgtgtgacctcaggcaggagatttttccctggagcctccttccctccatctataaa-gag-ggACTGGACACAGCAGCCCAGAAGGCTTC---TCGGAGGAGGACGTGAGAAGGTGTGCTGAGTCCTGCCCTGCTGAGCAGGCAGGCGG-AAAATTTTACACACAAACTGAGTCCCTATGAGGAAGAGGCAAGCCCTCCGC
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964   0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e nomLeu3.chr1a            74488642   0 + 122973662 C
e gorGor5.CYUI01015250v1    5790042   0 +   6154872 C
e panTro5.chr6             29750603   2 + 175400573 I

a score=5226496.000000
s hg38.chr6_GL000254v2_alt   783130 1342 +   4827813 CCTCTGCCCTTCCTATGTCTGCATATCCAGAACTGCCTCAGGTGGAGAGGGCAGAGACTAGGGAGCACCCATAGATGCTCTGATGCTGGCCACAGCCCTTGGGGGTGACAGTGATGAGGACCTGGGTGCACATGTGGTGGAGCAGCCAAGACCAGCCAGAGAAGAGacacactcatgcacacacgtgttcacaacataca------cattcacactcacacacaaacacaTTGAATGCATGCGTGTTGACAGTTCAAGGAGTAGAGGACACTGGACCTGGGCCCTGCTGACCCAGGCAGGGCCCCACTCTGATGGGTGCTGTAACCCCAGACGTCACTGTTGCTGAACATCTGCCTGCCTCTGAGTTGTGGAGCAGCTGGAGACACACAGTGGTGTCTGTGAGTGTCTCTGTGTGCAGGACCCTTTTCTAAGTGAGAGGCACATCTCAGCACAGCTGACTGATCATTCTCGGGTAAGTGTGACCTGCTGTCTCCCCTTCCTGCTGACATGGGGGCAGATGCTACCAGATGGCATCACTGGCCTCCGGGGCGCTGTGGAGGGTAATGTCGCTGAGCTCCCACCAGGTGCTTTCTCTTCACTGACCATGTATTGCAGCCGtctcattcaccctcacactgacttcgtggaatgggtgctaatgtacccatttga-agatgagatgcctgaggtcagagcggaggcaactgacccagggACCCAGATGTGACTCTGGACTGTGATCTCAGCCCTGCCTTGTGCTGTCCTGCACTCAACTCCTGACCTCTGCAGCCTTCCTGCCTTAGATACAAAATCTGCTGAGGATTCTGGACCCCAGTGGGGGTAGAACCTGGCTCTGGAAGAGCCACAGGAATGGGGGGCCCTGTGGGTGGGGTTAGAGGCATCCCTCAGTCCAAGTCTGTGCAAGAAAAAGTTCCCCAGAGGCAGGGATCTTATCCATTCAGACTTTAAGTGTGGGCTCTGATGGTTACTGTGGGACCCACCAGGCACTGGAGTTTTCCAGTTTGGGAGCAGAGCTGGGAGCCCTCTGCCCTCGAATAGTTGTGGAAAATGAAGAAACCCTGGAGGTCTGGCCGAAAGGTGAC-AGTCATTCCTCCTGTTCTCTGAGGCC-TGGGGACAGGGGTTTAACCTGCAAGGCCCTCTCTCTGACCTGTCCTCCAGACGTATCACCTTCCCTTTGTCTCAGGTATTCCCAGGAGAGATGGCCCCTCTGGGTGTTCTCCAGAACCTGTCCCCAAGAGTTCACTTGTTCTTTGGTGACCTGGGAAAACAAAGCCTCTTCCTGTATCAACTGCTCAGGACTGTGGAATCTGCCCTCCCTCCACCAAAG
s panTro5.chr6             29750605 1342 + 175400573 cctctgccCTTCCTATGTCTGCATATCCAGAACTGCCTCAGGTGGAGAGGGCAGAGACTAGGGAGCACCCATAGAGGCTCTGATGCTGGCCACAGCCCTTGGGGGAGACAGTGATGAGGACCTGGGTGCACATGTGGTGGAGCAGCCAAGACCAGCCAGAGAAGAGacacactcatgcacacatgtgttcacaacataca------cattcacactcacacacaaacacaTTGAATGCATACGTGTTGACAGTTCAAGGGGTAGAGGACACTGGACCTGGGCCCTGCTGACCCAGGCAGGGCCCCACTCTGATGGGTGCTGTAACCCCAGACGTCACTGTTGCTGAACATCTGCCTGCCTCTGAGTTGTGGAGCAGCTGGAGACACACAGTGGTGTCTGTGAGTGTCTCTGTGTGCAGGACCCTTTTCTAAGTGAGAGGCACATCTCAGCACAGCTGACTGATCATTCTCGGGTAAGTGTGACCTGCTGTCTCCCCTTCCTGCTGACATGGGGGCAGATGCTACCAGATGGCATCACTGGCCTCCGGGGCGCTGTGGAGGGTAATGTCGCTGAGCTCCCAccaggtgctttctcttcactgaccatgtattgcagccgtctcattcaccctcacactgacttcgtggaatgggtgctaatgtacccatttga-agatgagatgcctgaggtcagaggggaggcaactgacccagggacccagatgtgactctggactgtgatctcagccctgcctTGTGCTGTCCTGCACTCAACTCCTGGCCTCTGCAGCCTTCCTGCCTTAGATACAAAATCTGCTGAGGATTCTGGACCCCAGTGGGGGTAGAACCTGGCTCTGGAAAAGCCACAGGAATGGGGGGCCCTGTGGGTGGGGTTAGAGGCATCCCTCAGTCCAAGTCTGTGCAAGAAAAAGCTCCCCAGAGGCAGGGATCTTATCCATTCAGACTTTAAGTGTGGGCTCTGATGGTTACTGTGGGACCCACCAGACACTGGAGTTTTCCAGTTTGGGAGCAGAGCTGGGAGCCCTCTGCCCTCGAATAGTTGTGGAAAATGAAGAAACCCTGGAGGTCTGGCCGAAAGGTGAC-AGTCATTCCTCCTGTTCTCTGAGGCC-TGGGGACAGGGGTTTAACCTGCAAGGCCCTCTCTGTGACCTGTCCTCCAGACGTATCACCTTCCCTTTGTCTCAGGTATTCCCAGGAGAGATGGCCCCTCTGGGTGTTCTCCAGAACCTGTCCCCAAGAGTTCACTTGTTCTTTGGTGACCTGGGAAAACAAAGCCTCTTCCTGTATCAACAGCTCAGGACTGTGGAATCTGCCCTCCCTCCACCAAAG
i panTro5.chr6             I 2 C 0
s panPan2.chr6             29985228 1342 + 173848474 CCTCTGCCCTTCCTATGTCTGCATATCCAGAACTGCCTCAGGTGGAGAGGGCAGAGACTAGGGAGCACCCATAGATGCTCTGATGCTGGCCACAGCCCTTGGGGGAGACAGTGATGAGGACCTGGGTGCACATGTGGTGGAGCAGCCAAGACCAGCCAGAGAAGAGacacactcatgcacacatgtgttcacaacataca------cattcacactcacacacaaacacaTTGAATGCATACGTGTTGACAGTTCAAGGGGTAGAGGACACTGGACCTGGGCCCTGCTGACCCAGGCAGAGCCCCACTCTGATGGGTGCTGTAACCCCAGACGTCACTGTTGCTGAACATCTGCCTGCCTCTGAGTTGTGGAGCAGCTGGAGACACACAGTGGTGTCTGTGAGTGTCTCTGTGTGCAGGACCCTTTTCTAAGTGAGAGGCACATCTCAGCACAGCTGACTGATCATTCTCGGGTAAGTGTGACCTGCTGTCTCCCCTTCCTGCTGACATGGGGGCAGATGCTACCAGATGGCATCACTGGCCTCCGGGGCGCTGTGGAGGGTAATGTCGCTGAGCTCCCAccaggtgctttctcttcactgaccatgtattgcagccgtctcattcaccctcacactgacttcgtggaatgggtgctaatgtacccatttga-agatgagatgcctgaggtcagaggggaggcaactgacccagggacccagatgtgactctggactgtgatctcagccctgcctTGTGCTGTCCTGCACTCAACTCCTGGCCTCTGCAGCCTTCCTGCCTTAGATACAAAATCTGCTGAGGATTCTGGACCCCAGTGGGGGTAGAACCTGGCTCTGGAAGAGCCACAGGAATGGGGGGCCCTGTGGGTGGGGTTAGAGGCATCCCTCAGTCCAAGTCTGTGCAAGAAAAAGCTCCCCAGAGGCAGGGATCTTATCCATTCAGACTTTAAGTGTGGGCTCTGATGGTTACTGTGGGACCCACCAGACACTGGAGTTTTCCAGTTTGGGAGCAGAGCTGGGAGCCCTCTGCCCTCGAATAGTTGTGGGAAATGAAGAAACCCTGGAGGTCTGGCCGAAAGGTGAC-AGTCATTCCTCCTGTTCTCTGAGGCC-TGGGGACAGGGGTTTAACCTGCAAGGCCCTCTCTGTGACCTGTCCTCCAGACGTATCACCTTCCCTTTGTCTCAGGTATTCCCAGGAGAGATGGCCCCTCTGGGTGTTCTCCAGAACCTGTCCCCAAGAGTTCACTTGTTCTTTGGTGACCTGGGAAAACAAAGCCTCTTCCTGTATCAACAGCTCAGGACTGTGGAATCTGCCCTCCCTCCACCAAAG
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             29955482 1349 + 172585720 CCTCTG-CCTTCCTCTGTCTGCATCCCCAGAACTGCCTCAGGTGGAGAAGGCAGAGATTGGGGAGCACCCATGGATGCTCTGATGCTGGCCACAGCGCTGGGGGGTGACAGTGATGAGGACCTGGGTGCACATGGGGTGGAGCAGCCAAGACCAGCCCGAGAAGAGATacactcatgcacacacgtgttcacaacatacacatactcattcacattcacacacaaacacacCGAATGCATACATGCTGATAGTTCAAGGGGTAGAGGATGCTGGACCTGGGCCTTGCTGACCCAGGCAGGGCCCCATTCTGACGGATGCTGTAACCCCAGACGTCACCGTGGCTGAACATCTGCCTGCCTCTGGGTTGTGGAGCAGCTGGAGACACACAGTGGTGTCTGTGAGTGCCTCTGTGTGCAGGACCCTTTTGGAAGTGAGAGGCACATCTCAGCACAGCTGACTGGTCATTCTCGGGTAAGTGTGACCTGCTCTCTCCCCTTCCTGCTAACTTGGGGACAGATGCCACCCGATGACAGCACTGGCCTCTGGGGCGCTGTGGAGGGTAATGTCGCTGAGCTCCCAccaggtgcgttttcctcactgaccatgtattgcagccatctcatccaccttcacactgactttgtggaatgggtgctaatgtacccatttgacagatgagatgcctgaggtcagaggggaggtaactgacccagggacccagATGTGACTCTGGACTGTGATCTCAGCCCTACCTTGTGCTGTCCTGGACTCAACTCCTGGCCTCTGCAACCTTCCTGCCTTACACACAAAATCTGCTGAGGATTCTGTACCCCAGTCGGGGTAGAACCTGGCCCTGGAAGAGCCACAGGAAT-GGGGGCCCTGTGGGTGGGGTTAGAGGCATCCCTCAGTCCAAGTCTGTGCAAGACAAAGGTCCCCAGAGGCAGGGATCTTATCCATTCAGACTCTAGGTGTGGGCTCAGATGGTTGCTGTAGGTCTCACCAGACACTGGGGTTTTCCAGTTTGGGAGCAGAGCTGGGAGCCCTCTGCCCTCAAATAGTTGTGAAAAATGAAGAAACCCTGGAGGTCTGGCCAGAAGGTGACAAGTCATTCCTCCTGTTGTCTGGGGCCTTGGGGACAGGGGTTTAACCTGCAGGGTACTCTCTCTGACCTGTCCTCTAGAGGTATCACCTTCCCTTTGTCTCAGGTATTCCCAGGAGAGACGGCCCCTCTGGGTGTTCTCCAGAACCCGTCCCCAAGAGTTCACTTGTTCCCCCGTCATCTGGGAAAACAAAGCCTCTTCCTGTATCGACAGCTCAGGACTGTGGAATCTGCCCTCCCTCCTCCAAAG
i rheMac8.chr4             C 0 I 19
s macFas5.chr4             29619418 1349 - 170955103 CCTCTG-CCTTCCTCTGTCTGCATCCCCAGAACTGCCTCAGGTGGAGAAGGCAGAGATTGGGGAGCACCCATGGATGCTCTGATGCTGGCCACAGCGCTGGGGGGTGACAGTGATGAGGACCTGGGTGCACAGGGGGTGGAGCAGCCAAGACCAGCCCGAGAAGAGACACACTCATGCACACACGTGTTCACAACATACACATACTCATTCACATTCACACATAAACACATCGAATGCATACATGCTGATAGTTCAAGGGGTAGAGGATGCTGGACCTGGGCCTTGCTGACCCAGGCAGGGCCCCATTCTGACGGATGCTGTAACCCCAGACGTCACCGTGGCTGAACATCTGCCTGCCTCTGGGTTGTGGAGCAGCTGGAGACACACAGTGGTGTCTGTGAGTGCCTCTGTGTGCAGGACCCTTTTCGAAGTGAGAGGCACATCTCAGCACAGCTGACTGGTCATTCTCGGGTAAGTGTGACCTGCTCTCTCCCCTTCCTGCTAACTTGGGGACAGATGCCACCCGATGACAGCACTGGCCTCTGGGGCGCTGTGGAGGGTAATGTCGCTGAGCTCCCAccaggtgcgttttcctcactgaccatgtattgcagccatctcattcaccttcacactgactttgtggaatgggtgctaatgtacccatttgacagatgagatgcctgaggtcagaggggaggtaactgacccagggACCCAGATGTGACTCTGGACTGTGATCTCAGCCCTACCTTGTGCTGTCCTGGACTCAACTCCTGGCCTCTGCAACCTTCCTGCCTTACACACAAAATCTGCCGAGGATTCTGTACCCCAGTCGGGGTAGAACCTGGCCCTGGAAGAGCCACAGGAAT-GGGGGCCCTGTGGGTGGGGTTAGAGGCATCCCTCAGTCCAAGTCTGTGCAAGACAAAGGTCCCCAGAGGCAGGGATCTTATCCATTCAGACTCTAGGTGTGGGCTCAGATGGTTGCTGTAGGTCTCACCAGACACTGGGGTTTTCCAGTTTGGGAGCAGAGCTGGGAGCCCTCTGCCCTCAAATAGTTGTGAAAAATGAAGAAACCCTGGAGGTCTGGCCAGAAGGTGACAAGTCATTCCTCCTGTTGTCTGGGGCCTTGGGGACAGGGGTTTAACCTGCAGGGTACTCTCTCTGACCTGTCCTCTAGAGGTATCACCTTCCCTTTGTCTCAGGTATTCCCAGGAGAGACGGCCCCTCTGGGTGTTCTCCAGAACCCGTCCCCAAGAGTTCACTTGTTCCCCCGTCATCTGGGAAAACAAAGCCTCTTCCTGTATCGACAGCTCAGGACTGTGGAATCTGCCCTCCCTCCTCCAAAG
i macFas5.chr4             C 0 I 19
s macNem1.NW_012011356v1    2662849 1349 -   2996164 CCTCTG-CCTTCCTCTGTCTGCATCCCCAGAACTGCCTCAGGTGGAGAAGGCAGAGATTGGGGAGCACCCATGGATGCTCTGATGCTGGCCACAGAGCTGGGGGGTGACAGTGATGAGGACCTGGGTGCACATGGGGTGGAGCAGCCAAGACCAGCCCGAGAAGAGATacactcatgcacacacgtgttcacaacatacacatactcattcacattcacacacaaacacatCGAATGCATACATGTTGATAGTTCAAGGGGTAGAGGATGCTGGACCTGGGCCTTGCTGACCCAGGCAGGGCCCCATTCTGACGGATGCTGTAAGCCCAGATGTCACCGTGGCTGAACATCTGCCTGCCTCTGGGTTGTGGAGCAGCTGGGGACACACAGTGGTGTCTGTGAGTGTCTCTGTGTGCAGGACCCTTTTCGAAGTGAGAGGCACATCTCAGCACAGCTGACTGGTCATTCTCGGGTAAGTGTGACCTGCTCTCTCCCCTTCCTGCTAACTTGGGGACAGATGCCACCCGATGACAGCACTGGCCTCTGGGGCACTGTGGAGGGTAATGTCGCTGAGCTCCCACCAGGTGCGTTTTCCTCACTGACcatgtattgcagccatctcatccaccttcacactgactttgtggaatgggtgctaatgtacccatttgacagatgagatgcctgaggtcagaggggaggtaactgacccagggACCCAGATGTGACTCTGGACTGTGATCTCAGCCCTACCTTGTGCTGTCCTGGACTCAACTCCTGGCCTCTGCAACCTTCCTGCCTTACATACAAAATCTGCCGAGGATTCTGTACCCCAGTCGGGGTAGAACCTGGCCCTGGAAGAGCCACAGGAAT-GGGGGCCCTGTGGGTGGGGTTAGAGGCATCCCTCAGTCCAAGTCTGTGCAAGACAAAGGTCCCCAGAGGCAGGGATCTTATCCATTCAGACTCTAGGTGTGGGCTCAGATGGTTGCTGTAGGTCTCACCAGACACTGGGGTTTTCCAGTTTGGGAGCAGAGCTGGGAGCCCTCTGCCCTCAAATAGTTGTGAAAAATGAAGAAACCCTGGAGGTCTGGCCAGAAGGTGACAAGTCATTCCTCCTGTTGTCTGGGGCCTTGGGGACAGGGGTTTAACCTGCAGGGTACTCTCTCTGACCTGTCCTCTAGAGGTATCACCTTCCCTTTGTCTCAGGTATTCCCAGGAGAGATGGCCCCTCTGGGTGTTCTCCAGAACCCGTCCCCAAGAGTTCACTTGTTCCCCCGTCATCTGGGAAAACAAAGCCTCTTCCTGTATGGACAGCTCAGGACTGTGGAATCTGCCCTCCCTCCTCCAAAG
i macNem1.NW_012011356v1   C 0 I 19
s cerAty1.NW_012002711v1     414926 1331 +    766320 CCTCTG-CCTTCCTCTGTCTGCATCCCCAGAACTGCCTCAGGTGGAGAAGGCAGAGATTGGGGAGCACCCATGGATGCTCTGATGCTGGCCACAGCCCTTGGGGGTGACAGTGATGAGGACCTGGGTGCACATGGAGTGGAGCAGCCAAGACCAGCCCGAGAAGAGacacactcatgcacacatgtgttcacaacatacacatactcattcacattcacacacaaacacatCGAATGCATACATGTTGACAGTTCAAGGGGTAGAGGATGCTGGACCTGGGCCTTGCTGACCCAGGCAGAGCCCCATTCTGACGGATGCTGTAACCCCAGACATCACCGTGGCTGAACATCTGCCTGCCTCTGAGTTGTGGAGCAGCTGGAGACACACAGTGGTGTCTGTGAGCGTCTCCGCATGCAGGACCCTTTTTGAAGTGAGAGGCACATCTCAGCACAGATGACTGATCATTCTCAGGTAAGTGTGACCTGCTCTCTCCCCTTCCTGCTAACTTGGGGACAGATGGCACCAGATGACAGCACTGGCCTCTGGGGCACTGTGGAGGGTAACGTCGCtgagctcccaccaggtgccttttcttcact--------------ttcatcccattcaccttcacactgactttgtggaatgggtgctaatgtacccatttgacagatgagatgtctgaggtcagaggggaggtaactgacccagggacccagATGTGACTCTGGACTGTGATCTCAGCCCTACTTTGTGCTGTCCTGGACTCAACTCCTGGCCTCTGCAGCCTTCCTGCCTTACATACAAAATCTGCCGCGGATTCTGTACCCCAGTCAGGGTAGAACCTGGCCCTGGAAGAGCCACAGGAAT-GGGGGCCCTGTGGGTGGGGTTAGAGGCATCCCTCAGTCCAAGTCTGTGCAAGACAAAGGTCCCCAGAGGCAGGGATCTTATCCATTCAGACTCTAGGTGT-GGCTCAGATGGTTGCTGTAGGTCTCACCAGACACTGGGGTTTTCCAGTTTGGGAGCAGAGTTGGGAGCCCTCTGCCCTCAAATAGTTGTGAAAAATGAAGAAACCCTGAAGGTCTGGCCAGAAGGTGAC-AGTCATTCCTCCTGTTGTCTGGGGCC-TAGGGACAGGGGTTTAACCTGCAAGGCCCTCTCTCTGACCTGTCCTCTAGAGGTATCACCTTCCCTTTGTCTCAGGTATTCCCAGGAGAGATGGCCCCTCTGGGTGTTCTCCAGAACCCGTCCCCAAGAGTTCACTTG-TCCCTGGTGACCTGGGAAAACAAAGCCTCTTCCTGTATCGACAGCTCAGGACTGTGGAATCTGCCCTCCCTCCACCAAAG
i cerAty1.NW_012002711v1   C 0 I 19
s chlSab2.chr17            28873085 1341 -  71996105 CCTCTG-CCTTCCTCTGTCTGCATCCCCAGAACTGCCTCAGGTGGAGAAGGCAGAGATTGGGGAGCACCCATGGATGCTCTGATGCTGGCCACAGCCCTTGGGAGTGACAGTGATGAGGACCTGGGTGCACATGGGGTGGAGCAGCCAAGACCAACCCGAGAAGAGacacactcatgcacacatgtgttcacaacatacacatactcattcacattcacacacaaacacatCGAATGCATACATGTTGACAGTTCAAGGGATAGAGGATGCTGGACCTGGGCTTTGCTGACCCAGGCAGGGCCCCATTCTGGTGGGTGCTGTAACCCCAGACATCACTGTTGCTGAACATCTGCCTGCCTCTGAGTTGTGGAGCAGCTGGAGACACACAGTGGTGTCTGTGAGCGTCTCTGCGTGCAGGACCCTTTTCGAAGTGAGAGGCACATCTCAGCACAGCTGACTGATCATTCTCGGGTAAGTGTGACCTGCTGT-----CTTCCTGCTAACTTGGGGACAGACGGCACCAGATGACAGCACTGGCCTCTGGGGCGCTGTGGAGGGTAATGTCACTGAGCTCCCACCAGGTGCCTTTTCTTCACTGACcatgtattgcagccatctcattcaccttcacactgactttgtggaatgggtgctaatgtacccatttgacagaagagatgtctgaggtcagaggggaggtaactgacccagggACCCAGATGTGACTCTGGACGGTGATCTCAGCCCTACCTTGTGCTGTCCTGGACTCAACTCCTGACCTCTGCAACCTTCCTGCCTTACATACAAAATCTGCCGAGGATTCTGGACCCCAGTCAGGGTAGAACCTGGCCCTGGAAGAGCCACAGGAAT-GGGGGCCCTGTGGGTGGGGTTAGAGGCATCCCTCAGTCCAAGTCTGTGCAAGACAAAGGTCCCCAGAGGCAGGGATCCTATCCATTCAGACTCTAGGCGTGGGCTCAGATGGTTGCTGTAGGTCTCACCAGACACTGGGGTTTTCCAGTTTGGGAGCAGAGCCGGGAGCCCTCTGCCCTCAAATAGTTGTGGAAAACGAAGAAACCCTGGAGGTCTGGCCAGAAGGTGAC-AATCATTCCTCCTGTTGTCTGGGGCC-TGGGGACAGGGGTTTAACCTGCAAGGCCCTCTCTCTGACCTGTCCTCTAGAGGTATCACCTTCGCTTTGTCTCAGGTATTCCCAGGAGAGATGGCCCCTCTGGGTGTTCTCCAGAACCCGTCCCCAAGAGTTCACTTG-TCCCCGGTGACCTGGGAAAACAAAGCCTCTTCCTGTATCGACAGCTCAGGACTGTGGAATCTGCCCTCCCTCCACCAAAG
i chlSab2.chr17            C 0 I 19
s manLeu1.NW_012099233v1      49068 1346 +    290775 CCTCTG-CCTTCCTGTGTCTGCATCCCCAGAACTGCCTCAGGTGGAAAAGGCAGAGACTGGGGAGCACCCATGGATGCTCTGATGCTGGCCACAGCCCTTGGGGGTGACAGTGATGAGGACCTGGGTGCACATGGAGTGGAGCAGCCAAGACCAGCCCAAGAAGAGacacactcatgcacacatgtgttcacaacatacacatactcattcacattcacacacaaacacatCGAATGCATACATGTTGACAGTTCAAGGGGCAGAGGATGCTGGACCTGGGCCTTGCTGACCCAGGCAGGGCCCCATTCTGACGGATGCTGTAACCCCAGACCTCACCGTTGCTGAACATCTGCCTGCCTCTGAGTTGTGGAGCAGCTGGAGACACACAGTGGTGTCTGTGAGCGTCTCCGCATGCAGGACCCTTTTCGAAGTGAGAGGCACATCTCAGCACAGCTGACTGATCATTCTCGGGTAAGTGTGACCTGCTCTCTCCCCTTCCTGCTAACTTGGGGACAGATGGCACCCAATGACAGCACTGGCCTCTGGGGCACTGTGGAGGGTAATGTCACTGAGCTCCCACCAGGTGCGTTTTCTTCACTGACcatgtattgcagccatctcattcaccttcacactgactttgtggaatgggtgctaatgtacccatttgacagatgagatgcctgaggtcagaggggaggtaactgacccagggACCCAGATGTGACTCTGGACTGTGATCTCAGCCCTACCTTGTGCTGTCCTGGACTCACCTCCTGGCCTCTGCAGCCTTCCTGCCTTACATACAAAATCTGCTGAGGATTCTGGACCCCAGTCGGGGTAGAACCTGGCCCTGGAAGAGCCACAGGAAT-GGGTGCCCTGTGGGTGGGGTTAGAGGCATCCCTCAGTCCAAGTCTGTGCAAGACTAAGGTCCCCAGAGGCAGGGATCTTATCCATTCAGACTCTAGGTGTGGGCTCAGATGGTTGCTGTAGGTCTCACCAGACACTGGGGTTTTCCAGTTTGGGGGCAGAGCTGGGAGCCCTCTGCCCTCAAATAGTTGTGAAAAATGAAGAAACCCTGGAGGTCTGGCCAGAAGGTGAC-AGTCATTCCTCCTGTTGTCTGGGGCC-TAGGGACAGGGGTTTAACCTGCAAGGCCCTCTCTCTGACCTGCCCTCTAGAGGTATCACCTTCCCTTTGTCTCAGGTATTCCCAGGAGAGATGGTCCCTCTGGGTGTTCTCCAGAACCCGTCCCCAAGAGTTCACTTG-TCCCCGGTGACCTGGGAAAACAAAGCCTCTTCCTGTATCGACAGCTCAGGACTGTGGAATCTGCCCTCCCTCCACCAAAG
i manLeu1.NW_012099233v1   C 0 I 19
s colAng1.NW_012115566v1    2477747 1335 -   3067355 CCTCTGCCCTTCCTCTGTCTGCATCCCCAGGACCACCATGGATGGGGAGGAAAGAGATTGGGGAGCACCTGTAGAGGCTCTAATG------------CTCTGAGGTGACAGTGATGAGGACCTGGGTGCACATGGGGTGGAGCAGCCAAGACCAGCCCGAGAAGAGTCACACTCATGCACACATGTGTTCACAacatacatatactcattcacattcacacacaaacacattGAATGCATACATGTTGACAGTTCAAGGGGTAGAGGATGCTGGACCTGGGCCTTGCTGACCCAGGCAGGGCCCCATTCTGATGGGTGCTGTAACCCCAGACATCACTGTTGCTGAACATCTGCCTGCCTCTGAGTTGTGGAGCAGCTGGAGACACACAGTGGTGTCTGTGAGTGTCTCTGCATGCAGGACCCTTTTCGAAGTGAGAGGCACATCTCAGCACAGCTGACTGATCATTCTCGGGTAAGTGTGACCTGCTCTCTCCCCTTCCTGCTAACTTGGGGACAGATGCCACCAGATGACAGCACTGGCCTCTGGGGCGCTGTGGAGGGTAATGtcactgagctcccaccaggtgccttttcttcactgaccatgtattgcagccatctcattcaccttcacactgactttgtggaatgggtggtaatgtacccatttgacagatgagatgcctgaggtcagaggggaggtaactgacccagggacccagatgtaaCTCTGGACTGTGATCTCAGCCCTACCTTGTGCTGTCCTGGACTCAGCTCCTGGCCTCTGCAGCCTTCCTGCCTTACATACAAAATCTGCCAAGGATTCTGTACCCTAGTCGGGGTAGAACCTGGCCCTGGAAGAGCCACAGGAAT-GGGGGCCCTGTGGGTGGGGTTAGAGGCATCCCTCAGTCCAAGTCTGTGCAAGAAAAAGGTCCCCAGAGGCAGGGATCTTATCCATTCAGACTCTAGGTGTGGGCTCAGATGGTTGCTGTAGGTCTCACCAGACACTGGGGTTTTCCAGCTTGGGAGCAGAGCTGGGAGCCCTCTGCCCCCAAATAGTTGTGAAAAATGAAGAAAGCCTGGAGGTCTGGCCAGAAGGTG-C-AGTCATTCCTCCTGTTGTCTGGCGCT-TGGGGACAGGGGTTTAACCTGCAAGGCCCTCTCTCTGACCTGTCCTCTAGAGGTATCACCTTCCCTTTGTCTCAGGTATTCCCAGGAGAGATGGACCCTCTGGGTGTTCTCCAGAACCCATCCCCAAGAATTCACTTGTTCCCCGGTTACCTGGGAAAACAAAGCCTCTTCCTATATCGACAGCTCAGGACTGTGGAATCTGCCCTCCCTCCACCAAAG
i colAng1.NW_012115566v1   C 0 I 7015
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964    0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e nomLeu3.chr1a            74488642    0 + 122973662 C
e gorGor5.CYUI01015250v1    5790042    0 +   6154872 C

a score=3812988.000000
s hg38.chr6_GL000254v2_alt   784472 1217 +   4827813 GGAGGCTGCTTTGGAGACAATAGATCAAGCCTTCTCCGAACCAAACATCCTCCTTCTTGACTGGTGTTATTCTTCAAATGGATTCACTGGCCACAGTGAGTAAAGATTTGAGTGGAACAGAACACTCATGAGATTTCTTCTTTCCTATAGAAAACTGGGCATCTTCATGGTGTCTGAACAATAGCAGGAGGCTGATCATATAGAGATTTCTGGTTCCTGGCCCTAGTCTGCCTCCAGGTGTCCATTATAGTCATCATGGCCCTTCACCCTGAGCAGGTAGATGCCGTTCATCCTGCTGTGGAGTGTGTGCCCATTTCAGGACATTTAGGGACAACAAGTCTTGTTGTCTAGGTCTCCTTGTTTTAAAGTCCTCAGGAAAGGGCCCACCTCTGGTCAGGCCCAGGGACTCCAGAAATCCTGGCAGAGGTGGGGCCATTTGGCTTGGTCCCATTGTCCTGGGGGTGTTGGTGAAATGAAGTTCACCCGGCTGGCATCTGGGAGCAGATGTATGGGGTGTTCTCTAAAGCTCTCAGGTGCCATGTAATTTTGGGAGTATTTTGTCTTATAGGGTGGATATGGACAAAGACATGGATATCCTGCTCGCCCAGGAGTAAAGGGACATCATTGCCAAGTATAAGCAGACACAGGTCAGGCTGCTCCCTCCAGGAAGGC-GGGTCTCACCTCTCCCTCTGTTCCCTGGTCTGATGGTCCTGGACTCCTTCGGGATGCAGGGCAAGGATGAGCTGCCCACACGCCCATACCCAACAACTTTTATTTTGGCCTCCCTCACCCTCTCTCCCTCTGCCTTGCAGGTTGCTGATCCAGGGCACCAGTGGACACAGGAGATGAAGATGTTTACATCTACAAGGTCATCAGTCAGCTTGAGATTCCACAGTGAGTCAGTCTTCTGTCCTCCCAACCAATtgccaagaccagctcggtcgtggagaccctaacccagtggcgctagaggaattaaagacacagacacagaaatagagtgtagagtgggaatcaggggctgatagccttcagagctgagagccatgaatggagttagacccacatattaattgacagtaagccagtgataagcattgcttctatagattatatattagctaaaagcattccttatgggaaacaaagcattcttagcgaggagcagagaaacaggccctggctgatatctgcagcaaaagcatgttgttaaggca
s panTro5.chr6             29751947 1217 + 175400573 GGAGGCTGCTTTGGAGACAATAGATCAAGCCTTCTCCGAACCAAACATCCTCCTGCTTGACTGGTGTTATTCTTCAAATGGATTCACTGGCCACAGTGAGTAAAGATTTGAGTGGAACAGAACACTCATGAGATTTCTTCTTTCCTATAGAAAACTGGGCATCTTCATGGTGTCTGAACAATAGCAGGAGGCTGATCATATAGAGATTTCTGGTTCCTGGCCCTAGTCTGCCTCCAGGTGTCCATTATAGTCATCATGGCCCTTCACCCTGAGCAGGTAGATGCCGTTCATCCTGCTGTGGAGTGTGTGCCCATTTCAGGACATTTAGGGACAACAAGTCTTGTTGTCTAGGTCTCCTTGTTTTAAAGTCCTCAGGAAAGGGCCCACCTCTGGTCAGGCCCAGGGACTCCAGAAATCCTGGCAGAGGTGGGGCCATTTGGCTTGGTCCCATTGTCCTGGGGGTGTTGGTGAAATGAAGTTCACCCGGCTGGCATCTGGGAGCAGATGTATGGGGTGTTCTCTAAAGCTCTCAGGTGCCATGTAATTTTGGGAATATTTTGTCTTATAGGGTGGATATGGACAAAGACATGGATATCCTGCTCGCCCAGGAGTAAAGGGACATCATTGCCAAGTATAAGCAGACACAGGTCAGGCTGCTCCCTCCAGGGAGGC-GGGTCTCACCTCTCCCTCTGTTCCCTGGTCTGATGGTCCTGGACTCCTTCGGGATGCAGGGCAAGGAGGAGCCGCCCACACGCCCATACCCAACAACTTTTATTTTGGCCTCCCTCACCCTCTCTCCCTCTGCCTTGCAGGTTGCTGATCCAGGGCACCAGTGGACACAGGAGATGAAGATGTTTACATCTACAAGGTAATCAGTCAGCTTGAGATTCCACAGTGAGTCAGTCTTCTGTCCTCCCAACCAATtgccaagaccagctcggtcgtggagaccctaacccagtggcgctagaggaattaaagacacagacacagaaatagagtgtagagtgggaatcaggggctgacagccttcagagctgagagccatgaacggagttagacccacgtattaattgacagtaagccagtgataagcattgcttctatagattatagattagctaaaagcattccttatgggaaacaaagcattcttagcgaggagcagagaaacgggccctggctgatatctgcagcaaaagcatgttgttaaggca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29986570 1217 + 173848474 GGAGGCTGCTTTGGAGACAATAGATCAAGCCTTCTCCGAACCAAACATCCTCCTGCTTGACTGGTGTTATTCTTCAAATGGATTCACTGGCCACAGTGAGTAAAGATTTGAGTGGAACAGAACACTCATGAGATTTCTTCTTTCCTATAGAAAACTGGGCATCTTCATGGTGTCTGAACAATAGCAGGAGGCTGATCATATAGAGATTTCTGGTTCCTGGCCCTAGTCTGCCTCCAGGTGTCCATTATAGTCATCATGGCCCTTCACCCTGAGCAGGTAGATGCCGTTCATCCTGCTGTGGAGTGTGTGCCCATTTCAGGACATTTAGGGACAACAAGTCTTGTTGTCTAGGTCTCCTTGTTTTAAAGTCCTCAGGAAAGGGCCCACCTCTGGTCAGGCCCAGGGACTCCAGAAATCCTGGCAGAGGTGGGGCCATTTGGCTTGGTCCCATTGTCCTGGGGGTGTTGGTGAAATGAAGTTCACCCGGCTGGCATCTGGGAGCAGATGTATGGGGTGTTCTCTAAAGCTCTCAGGTGCCATGTAATTTTGGGAATATTTTGTCTTATAGGGTGGATATGGACAAAGACATGGATATCCTGCTCGCCCAGGAGTAAAGGGACATCATTGCCAAGTATAAGCAGACACAGGTCAGGCTGCTCCCTCCAGGGAGGC-GGGTCTCACCTCTCCCTCTGTTCCCTGGTCTGATGGTCCTGGACTCCTTCGGGATGCAGGGCAAGGAGGAGCCGCCCACACGCCCATACCCAACAACTTTTATTTTGGCCTCCCTCACCCTCTCTCCCTCTGCCTTGCAGGTTGCTGATCCAGGGCACCAGTGGACACAGGAGATGAAGATGTTTACATCTACAAGGTAATCAGTCAGCTTGAGATTCCACAGTGAGTCAGTCTTCTGTCCTCCCAACCAATtgccaagaccagctcggtcgtggagaccctaacccagtggcgctagaggaattaaagacacagacacagaaatagagtgtagagtgggaatcaggggctgacagccttcagagctgagagccatgaacggagttagacccacgtattaattgacagtaagccagtgataagcattgcttctatagattatagattagctaaaagcattccttatgggaaacaaagcattcttagcgaggagcagagaaacgggccctggctgatatctgcagcaaaagcatgttgttaaggca
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             29956850 1198 + 172585720 AGAGGCTGCTTTGGAGACAATAGATCAAGCTTTCTCCGAACCAAACATGCTCCTGCTTGACTGGTGTTATTCTCCAAATGGCCTCACTGGCCAGAGTGAGTAAAGATTGGAGTGGAACAGAACACTCATGAGATTTCTTCCTTCCTACAGAAAACTGCGCATCTTCATGGTCTCTGAGCAATCGCAGGAGGCTGATCTTATAGAGATTTCTGGTTCCTGGCCCTAGTCTGCCT-CGGGTGTCCATTACAGTCACCACAGCCCTTCACCCTGAGCAGGTAGATGCGGTTCATCCTGCTGTGGGGTGTGTGCCCATTTCAGGGCATTTAGGGACAACAAGCCTCGCTGTCTAGGTCCCCTTGTTTTAAAGTCCTCAGGAAAGAGCCCGCCTCTGGTTAGGCACAGGGACTCCAGAAATCCTGGCAGAGGTGGGGTCATTTCGCTTGGTCCCATTTTCCTGGGGGTGTTGGTGAAATGAGACTCACCCAGATGGCATCTGGGAGCAGACATACAGGGTGTTCTCTGAAGCTCTCAGGTGCCATGTAATTTTGGGAGTATTTTGTCTTATAGGGTGGATATGGACAAAGACATGGATAT-CTGCTCGCCCAGGAGTAAAGGGACATCACTGTCAAGCACAAGCAGACATAGGTCAGGCTACTCCCTCCGGGGAGGCGGGGTCTCACCTCTCCCTCTGTTCCCTGGTCCGATGGTCCTGGAGTCCCTCAGGATGCTGGGCAAGGAGGGGCTGCCCACACCCCCATACCCGACAACTTTCATTTTGGCCCCCCTCACCCTCTCTCCCTCTGCCTTGCAGGTTGCTGATCCAGGGCACCAGTGGACACAGGAGATGAAGATGTTTACATCTACAAGGTCATCAGTCAGCTCGAGATTCCACAGTGAGTCAGTCTTCTGTCCTCCCAACCAATtgctaagaccagct------------------cccagcggcgctagagggattaaagacacagacacagaaatagagtgtagagtggggatcaggggctgacagccttcagagctgagagccacaaatggagtttgacccacatatttattgacagtaagccagtgataagcattgcttctatagattatagattagctaaaagcattccttatgggaaacaaagcattcctagcgaggagcagagaaacaggccctggctgatgtctgcagtaaaagcatgttgttaaggca
i rheMac8.chr4             I 19 I 1905
s macFas5.chr4             29620786 1198 - 170955103 AGAGGCTGCTTTGGAGACAATAGATCAAGCTTTCTCCGAACCAAACATGCTCCTGCTTGACTGGTGTTATTCTCCAAATGGCCTCACTGGCCAGAGTGAGTAAAGATTGGAGTGGAACAGAACACTCATGAGATTTCTTCCTTCCTACAGAAAACTGCGCATCTTCATGGTCTCTGAGCAATCGCAGGAGGCTGATCTTATAGAGATTTCTGGTTCCTGGCCCTAGTCTGCCT-CGGGTGTCCATTACAGTCACCACAGCCCTTCACCCTGAGCAGGTAGATGCGGTTCATCCTGCTGTGGGGTGTGTGCCCATTTCAGGGCATTTAGGGACAACAAGCCTCGCTGTCTAGGTCCCCTTGTTTTAAAGTCCTCAGGAAAGAGCCCGCCTCTGGTTAGGCACAGGGACTCCAGAAATCCTGGCAGAGGTGGGGTCATTTCGCTTGGTCCCATTTTCCTGGGGGTGTTGGTGAAATGAGACTCACCCAGATGGCATCTGGGAGCAGACGTACAGGGTGTTCTCTGAAGCTCTCAGGTGCCATGTAATTTTGGGAGTATTTTGTCTTATAGGGTGGATATGGACAAAGACATGGATAT-CCGCTCGCCCAGGAGTAAAGGGACATCATTGTCAAGCACAAGCAGACATAGGTCAGGCTGCTCCCTCCGGGGAGGCGGGGTCTCACCTCTCCCTCTGTTCCCTGGTCCGATGGTCCTGGAGTCCCTCAGGATGCTGGGCAAGGAGGGGCTGCCCACACCCCCATACCCGACAACTTTCATTTTGGCCCCCCTCACCCTCTCTCCCTCTGCCTTGCAGGTTGCTGATCCAGGGCACCAGTGGACACAGGAGATGAAGATGTTTACATCTACAAGGTCATCAGTCAGCTCGAGATTCCACAGTGAGTCAGTCTTCTGTCCTCCCAACCAATtgctgagaccagct------------------cccagcggcgctagagggattaaagacacagacacagaaatagagtgtagagtggggatcaggggctgacagccttcagagctgagagccacaaatggagtttgacccacatatttattgacagtaagccagtgataagcattgcttctatagattatagattagctaaaagcattccttatgggaaacaaagcattcctagcgaggagcagagaaacaggccctggctgatgtctgcagtaaaagcatgttgttaaggca
i macFas5.chr4             I 19 I 1903
s macNem1.NW_012011356v1    2664217 1198 -   2996164 AGAGGCTGCTTTGGAGACAATAGATCAAGCTTTCTCCGAACCAAACATGCTCCTGCTTGACTGCTGTTATTCTCCAAATGGCCTCACTGGCCAGAGTGAGTAAAGATTGGAGTGGAACAGAACACTCATGAGATTTCTTCCTTCCTACAGAAAACTGCGCATCTTCATGGTCTCTGAGCAATCGCAGGAGGCTGATCTTATAGAGATTTCTGGTTCCTGGCCCTAGTCTGCCT-CGGGTGTCCATTACAGTCACCACAGCCCTTCACCCTGAGCAGGTAGATGCGGTTCATCCTGCTGTGGGGTGTGTGCCCATTTCAGGGCATTTAGGGACAACAAGCCTCGCTGTCTAGGTCCCCTTGTTTTAAAGTCCTCAGGAAAGAGCCCGCCTCTGGTCAGGCACAGGGACTCCAGAAATCCTGGCAGAGGTGGGGTCATTTCGCTTGGTCCCATTTTCCTGGGGGTGTTGGTGAAATGAGACTCACCCAGATGGCATCTGGGAGCAGACGTACAGGGTGTTCTCTGAAGCTCTCAGGTGCCATGTAATTTTGGGAGTATTTTGTCTTATAGGGTGGATATGGACAAAGACATGGATAT-CTGCTCGCCCAGGAGTAAAGGGACATCATTGTCAAGCACAAGCAGACACAGGTCAGGCTGCTGCCTCCGGGGAGGCGGGGTCTCACCTCTCCCTCTGTTCCCTGGTCCGATGGTCCTGGAGTCCCTCAGGATGCTGGGCAAGGAGGGGCTGCCCACACTCCCATACCCGACAACTTTCATTTTGGCCCCCCTCACCCTCTCTCCCTCTGCCTTGCAGGTTGCTGATCCAGGGCACCAGTGGACACAGGAGATGAAGATGTTTACATCTACAAGGTCATCAGTCAGCTCGAGATTCCACAGTGAGTCAGTCTTCTGTCCTCCCAACCAATtgctgagaccagct------------------cccagcggcgctagagggattaaagacacagacacagaaatagagtgtagagtggggatcaggggctgacagccttcagagctgagagccacaaatggagtttgacccacatatttattgacagtaagccagtgataagcattgcttctatagattatagattagctaaaagcattccttatgggaaacaaagcattcctagcgaggagtagagaaacaggccctggctgatgtctgcagtaaaagcatgttgttaaggca
i macNem1.NW_012011356v1   I 19 I 1913
s cerAty1.NW_012002711v1     416276 1215 +    766320 AGAGGCTGCTTTGGAGACAATAGATCAAGCTTTCTCCGAACCAAACATCCTCCTGCTTGACTGGTGTTATTCTCCAAATGGCCTTACTGGGCACAGTGGGTAAAGATTGGAGTGGAACAGAACACTCATGAGATTTCTTCCTTCCTACAGAAAACTGCGCGTCTTCATGGTCTCTGAGCAATCGCAGGAGGCTGATCATGTAGAGATTTCTGGTTCCTGGCCCTAGTCTGCCT-CGGGTGTCCATTACAGTCACCACGGCCCTTCACCCTGAGCAGGGAGATGCGGTTCATCCTGCTGTGGGGTGTGTGCCCATTTCGGGGCATTTAGGGACAACAAGCCTCGCTGTCTAGGTCCCCTTGTTTTAAAGTCTTCAGGAAAGAGCCCGCCTCTGGTCAGGCACAGGGACTCCAGAAATCCTGGCAGAGGTGGGGTCATTTCACTTGGTCCCATTTTCCTAGGGGTGTTGGTGAAATGAGACTCACCCAGATGGCATCTGGGAGCAGACGTACAGGGTGTTCTCTGAAGCTCTCAGGTGCCATGTAATTTTGGGAGTATTTTGTCTTATAGGATGGATATGGACAAAGACGTGGATAT-CTGCTCGCCCAGGAGTAAAGGGACATCATTGTCAAGCA-AAGCAGACACAGGTCAGGCTGCTCCCTCTGGGGAGGCGGGGTCTCACCTCTCCCTCTGTTCCCTGGTCCGATGGTCCTGGAGTCCCTCAGGATGCTGGGCAAGGAGGGGCCGCCCACACCCCCATACCCGACAACTTTCATTTTGGCGCCCCTCACCCTCTCTCCCTCTGCCTTGCAGGTTGCTGATCCAGGACACCAGTGGACACAGAAGATGAAGATGTTGACATCTACAAGGTCATCAGTCAGCTCGAGATTCCACAGTGAGTCAGTCTTCTGTCCTCCCAACCAATtgctgagaccagctcggtcgtggaggccctaacccagcggcgctagagggattaaagacacagacacagaaatagagtgtagagtgggaatcaggggctgacagccttcagagctgagagccacgaatggagtttgacccgcatatttattgacagtaagccagtgataagcattgcttctatagattatagattagctaaaagcattccttatgggaaacaaagtattcttagcgaggagcagagaaacaggccctggctgatgtctgcagcaaaagcatgttgttaaggca
i cerAty1.NW_012002711v1   I 19 I 1903
s chlSab2.chr17            28874445 1217 -  71996105 AGAGGCTGCTTTGGAGACAATAGATCAAGTTTTCTCCGAACCAGACATCCCCCTGCTTGACTGGTGTTATTCTCCAAATGGCCTCACTGGCCACAGTGAGTAAAGATTGGAGTGGAACAGAACACTCATGAGATTTCTTCCTTCCTACAGAAAACTGCGCATCTTCGTGGTCTCTGAACAATCACAGGAGGCTGATCATATAGAGATTTCTGGTTCCTGGCCCTAGTCTGCCTCCAGGTGTCCATTACAGTCACCAGGGCCCTTCACCCTGAGCAGGTAGATGCAGTTCATCCTGCTGTGGGGTGTGTGCCCATTTAGGGGCATTTAGGGACAACAAGCCTCGCTGTCTAGGTCCCCTTGTTTTAAAGTCCTCAGGAAAGAGCCTGCCTCTGGTCAGGCACAGGGACTCCAGAAATCCTGGCAGAGGTGGGGCCATTTCACTTGGTCCCATTTTCCTGCGGGTGTTGGTGAAATGAGACTCACCCAGATGGCATCTGGGAGCAGACGTACAGGGTGTTCTCTGAAGCTCTCAGGTGCCATGTAATTTTGGGAGTATTTTGTCTTATAGGATGGATATGGACAAAGACATGGATAT-CTGCTCGCCCAGGAGTAAAGGGACATCATTGTCAAGCACAAGCAGACACAGGTCAGGCTACTCCCTCCGGGGAGGCGGGGTCTCACCTCTCCCTCTGTTCCCTGGTCCGATGGTCCTGGAGTCCCTCAGGATGCTGGGCAAGGAGGGGCCGCCCACACCCCCATACCCGACAACTTTCATTTTGGCCCCCCTCACCCTCTCTCCCTCTGCCTTGCAGGTTGTTGATTCAGGGCACCAGTGGACACAGGAGATGAAGATGTTTACATCTACAAGGTCATCAGTCAGCTTGAGATTCCACAGTGAGTCAGTCTTCTGTCCTCCCAACCAATtgctgagaccagttcggtcgtggagaccctaacccagtggcgctagagggattaaagacacagacacagaaatagagtgtagagtggggatcaggggctgacagccttcagggctgagagccacgaatggagtttgacccgcatatttattgacagtaagccagtgataagcattgcttctgtagattatagattagctaaaagcattccttatgggaaacaaagcattcttagcgaggagcagagaaacaggccttggctgatgtctgcagcaaaagcatattgttaaggca
i chlSab2.chr17            I 19 I 1910
s manLeu1.NW_012099233v1      50433 1215 +    290775 AGAGGCTGCTTTGGAGACAATAGATCAAGCTTTCTCCGAACCCAACATCCTCCTGCTTGACTGGTGTTATTCTCCAAATGGCCTCACTGGCCACAGTGGGTAAAGATTGGAGTGGAACAGAACACTCACGAGATTTCTTCCTTCCTACAGAAAACTGAGCGTCTTCATGGTCTCTGAGCAATCGCAGGAGGCTGATCATGTAGAGATTTCTGGTTCCTGGCCCTAGTCTGCCT-CGGGTGTCCATTACAGTCACCACGGCCCTTCACCCTGAGCAGGGAGATGCGGTTCATCCTGCTGTGGGGTGTGTGCCCATTTCGGGGCATTTAGGGACAACAAGCCTCGCTGTCTAGGTCCCCTTGTTTTAATGTCCTCAGGAAAGAGCCCGCCTCTGGTCAGGCACAGGGACTCCAGAAATCCTGGCAGAGGTGGGGTCATTTCACTTGGTCCCATTTTCCTAGGGGTGTTGGTGAAATGAGACTCACCCGGATGGCATCTGGGAGCAGACGTACAGGGTGTTCTCTGAAGCTCTCAGGTGCCATGTAATTTTGGGAGTATTTTGTCTTATAGGATGGATATGGACAAAGACGTGGATAT-CTGCTCGCCCAGGAGTAAAGGGACATCATTGTCAAGCA-AAGCAGACACAGGTCAGGCTGCTCCCTCTGGGGAGGCGGGGTCTCACCTCTCCCTCTGTTCCCTGGTCCGATGGTCCTGGAGTCCCTCAGGATGCTGGGCAAGGAGGGGCCGCCCACATCCCCATACCCGACAACTTTCATTTTGGCGCCCCTCACCCTCTCTCCCTCTGCCTTGCAGGTTGCTGATCCAGGACACCAGTGGACACAGAAGATGAAGATGTTGACATCTACAAGGTCATCAGTCAGCTCGAGATTCCACAGTGAGTCAGTCTTCTGTCCTCCCAACCAATtgctgagaccagctcggtcgtggaggccctaacccagcggcgctagagggattaaagacacagacacagaaatagagtgtagagtgggaatcaggggctgacagccttcagagctgagagccacgaatggagtttgacccgcatatttattgacagtaagccagtgataagcattgcttctatagattatagattagctaaaagcattccttatgggaaacaaagtattcttagcgaggagcagagaaacaggccctggctgatgtctgcagcaaaagcatgttgttaaggca
i manLeu1.NW_012099233v1   I 19 I 1903
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964    0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e colAng1.NW_012115566v1    2479082 7015 -   3067355 I
e nomLeu3.chr1a            74488642    0 + 122973662 C
e gorGor5.CYUI01015250v1    5790042    0 +   6154872 C

a score=4203.000000
s hg38.chr6_GL000254v2_alt   785689 15 +   4827813 AAAAAGCATGTTGTT
s panTro5.chr6             29753164 15 + 175400573 AAAAAGCATGTTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29987787 15 + 173848474 AAAAAGCATGTTGTT
i panPan2.chr6             C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964  0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e colAng1.NW_012115566v1    2479082 7015 -   3067355 I
e manLeu1.NW_012099233v1      51648 1903 +    290775 I
e chlSab2.chr17            28875662 1910 -  71996105 I
e cerAty1.NW_012002711v1     417491 1903 +    766320 I
e macNem1.NW_012011356v1    2665415 1913 -   2996164 I
e macFas5.chr4             29621984 1903 - 170955103 I
e rheMac8.chr4             29958048 1905 + 172585720 I
e nomLeu3.chr1a            74488642  0 + 122973662 C
e gorGor5.CYUI01015250v1    5790042  0 +   6154872 C

a score=726.000000
s hg38.chr6_GL000254v2_alt   785704 2 +   4827813 AA
s panTro5.chr6             29753179 2 + 175400573 AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29987802 2 + 173848474 AA
i panPan2.chr6             C 0 C 0
s macFas5.chr4             29623887 2 - 170955103 AG
i macFas5.chr4             I 1903 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964 0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e colAng1.NW_012115566v1    2479082 7015 -   3067355 I
e manLeu1.NW_012099233v1      51648 1903 +    290775 I
e chlSab2.chr17            28875662 1910 -  71996105 I
e cerAty1.NW_012002711v1     417491 1903 +    766320 I
e macNem1.NW_012011356v1    2665415 1913 -   2996164 I
e rheMac8.chr4             29958048 1905 + 172585720 I
e nomLeu3.chr1a            74488642 0 + 122973662 C
e gorGor5.CYUI01015250v1    5790042 0 +   6154872 C

a score=22167.000000
s hg38.chr6_GL000254v2_alt   785706 7 +   4827813 GGAATCC
s panTro5.chr6             29753181 7 + 175400573 GGAATCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29987804 7 + 173848474 GGAATCC
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             29959953 7 + 172585720 GGAACCC
i rheMac8.chr4             I 1905 C 0
s macFas5.chr4             29623889 7 - 170955103 GGAACCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2667328 7 -   2996164 GGAACCC
i macNem1.NW_012011356v1   I 1913 C 0
s cerAty1.NW_012002711v1     419394 7 +    766320 GGAACCC
i cerAty1.NW_012002711v1   I 1903 C 0
s manLeu1.NW_012099233v1      53551 7 +    290775 GGAACCC
i manLeu1.NW_012099233v1   I 1903 C 0
s colAng1.NW_012115566v1    2486097 7 -   3067355 GGAACCC
i colAng1.NW_012115566v1   I 7015 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964 0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e chlSab2.chr17            28875662 1910 -  71996105 I
e nomLeu3.chr1a            74488642 0 + 122973662 C
e gorGor5.CYUI01015250v1    5790042 0 +   6154872 C

a score=1429049.000000
s hg38.chr6_GL000254v2_alt   785713 385 +   4827813 CCCTGCAGATGTGGAGTCAGGCATGGTCACTCCTGCTGGACGTTAAGAAGGTGAAGGCTGAAAACCCAAGTAAGTACCAGGTATGGTCCTTCCACACTCAGCCACAGCGGAAGAAACAGGCCAGGCCATGTCAGGAGCCCAGGTCTCTAGCTAGAGGAAAAGTCAAGCCTGAGTGATGGTCAGTCCCATATCCTAGGCACAGACGATGGCATGGGAACCACAAGTGAACTGGGCTCTGGTGACCCTCAGTGGCTTTGGAAATAAGATAGAGAAGGATATTTCTGCaaaaaaaaaaaaa-aaaaaaTCGTCTTTCCTTCCAGAAGTGCTGA-------ATGATTGCTGTTTGTGGTAGTGAGCCTTTTGTCTGTTATGAGGCTGGTTCCTTCC--T
s panTro5.chr6             29753188 382 + 175400573 CCCTGCAGATGTGGAGTCAGGCATGGTCACTCCTGCTGGACGTTAAGAAGGTGAAGGCTGAAAACCCAAGTAAGTACAAGGTATGGTCCTTCCACACTCAGCCACAGCGGAAGAAACAGGCCAGGCCATGTCAGGAGCCCGGGTCTCTAGCTAGAGGAAAAGTCAAGCCTGAGCGATGGTCAGTCCCATATCCTAGGCACAGACGATGGCATGGGAACCACAAGTGAACTGGGCTCTGGTGACCCTCAGTGGCTTTGGAAATAAGATAGAGAAGGATATTTCTGC---AAAAAAAAAA-AAAAAATCTTCTTTCCTTCCAGAAGTGCTGA-------ATGATTGCTGTTTGTGGTAGTGAGCCTTTTGTCTGTTATGAGGCTGGTTCCTTCC--T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29987811 383 + 173848474 CCCTGCAGATGTGGAGTCAGGCATGGTCACTCCTGCTGGACGTTAAGAAGGTGAAGGCTGAAAACCCAAGTAAGTACAAGGTATGGTCCTTCCACACTCAGCCACAGCGGAAGAAACAGGCCAGGCCATGTCAGGAGCCCGGGTCTCTAGCTAGAGGAAAAGTCAAGCCTGAGCGATGGTCAGTCCCATATCCTAGGCACAGACGATGGCATGGGAACCACAAGTGAACTGGGCTCTGGTGACCCTCAGTGGCTTTGGAAATAAGATAGAGAAGGATATTTCTGC--aaaaaaaaaaa-aaaaaaTCTTCTTTCCTTCCAGAAGTGCTGA-------ATGATTGCTGTTTGTGGTAGTGAGCCTTTTGTCTGTTATGAGGCTGGTTCCTTCC--T
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             29959960 376 + 172585720 CCCTGCAGATGTGCAGTCAGGCATGGTCATTCCTGCTGGATATCAAGAAGGTGAAGGCTGAAAAC-----------CCAGGTATGGTCCTTCCACACTCAGCTAGAGCAGAACAAACAGGCCAGGCTGTGTCAGCAGCCCAGGTCTCTAGATAGAGGAAAAGTCAAGCCTGGGTGATGGTCAGTCCCATATCCTAGGCACAGACGATGGCATGGGAACCACAAGTGAACTGGGCTTTGGTGACCCTCCGTGGCTTTGGAAATAAGGTAAAGAAGGATATTTCTGG----GAAAAAAAA-AAAAAATCTCCTTTCCTTCCAGAAGTGCTGAATGTTTTATGATTGCTGTTTGTAATAGTGAGCCTTTTGTCTGTTCTGAGGCTGGTTCCTTCC---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29623896 376 - 170955103 CCCTGCAGATGTGCAGTCAGGCATGGTCATTCCTGCTGGATATCAAGAAGGTGAAGGCTGAAAAC-----------CCAGGTATGGTCCTTCCACACTCAGCTAGAGCAGAACAAACAGGCCAGGCCGTGTCAGCAGCCCAGGTCTCTAGCTAGAGGAAAAGTCAAGCCTGGGTGATGGTCAGTCCCATATCCTAGGCACAGACGATGGCATGGGAACCACAAGTGAACTGGGCTCTGGTGACCCTCCGTGGCTTTGGAAATAAGGTAAAGAAGGATATTTCTGG----GAAAAAAAA-AAAAAATCTCCTTTCCTTCCAGAAGTGCTGAATGTTTTATGATTGCTGTTTGTAATAGTGAGCCTTTTGTCTGTTCTGAGGCTGGTTCCTTCC---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2667335 385 -   2996164 CCCTGCAGATGTGCAGTCAGGCATGGTCATTCCTGCTGGATATCAAGAAGGTGAAGGCTGAAAACCCAAGTAAGTACCAGGTATGGTCCTTCCACACTCAGCTAGAGCAGAACAAACAGGCCAGGCTGTGTCAGCAGCCCAGGTCTCTAGCTAGAGGAAAAGTCAAGCCTGGGTGATGGTCAGTCCCATATCCTAGGCACAGACGATGGCATGGGAACCACAAGTGAACTGGGCTCTGGTGACCCTCCGTGGCTTTGGAAATAAGGTAAAGAAGGATATTTCTGG------AAAAAAA-AAAAAATCTCCTTTCCTTCCAGAAGTGCTGAATGTTTTATGATTGCTGTTTGTAATAGTGAGCCTTTTGTCTGTTCTGAGGCTGGTTCCTTCC---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     419401 386 +    766320 CCCTGCAGATGTGCAGTCAGGCATGGTCATTCCTGCTGGACATCAAGAAGGTGAAGGCTGAAAACCCAAGGAAGTACCAGGTATGGTCCTTCCACACTCAGCTAGAGCAGAACAAACAGGCCAGGCCATGTCAGGAGCCCAGGTCTCTAGCTAGAGGAAAAGTCAAGCCTGGGTGATGGTCAGTCCCATATCCTAGGCACAGATGATGGCATGGGAACCACAAGTGAACTGGGCTCTGGTGAGCCTCCGTGGCTTTGGAAATAAGGTAAAGAAGGATATTTCTGG------AAAAAAA-AAAAATTCTCCTTTCCTTCCAGAAGTGCTGCATGTTTTATGATTGCTGTTTGTAATAGTGAGCCTTTTGTCTGTTCTGAGGCTGGTTCCTTCCT--
i cerAty1.NW_012002711v1   C 0 I 14
s chlSab2.chr17            28877572 386 -  71996105 CCCTGCAGATGTGCAGTCAGGCATGGTCATTCCTGCTGGACATCAAGAAGGTGAAGGCTGAAAACCCAAGGAAGTACCAGGTATGGTCCTTCCACACTCAGCTAGAGCAGAACAAACAGGCCAGGCCGTGTCAGCAGCCCAGGTCTCTAGCTAGAGGAAAAGTCAAGCCTGGGTGATGGTCAGTCCCATATCCTAGGCACAGACGATGGCATAGGAACCACAAGTGAACTGGGCTCTGGTGACCCTCCATGGCTTTGGAAATAAGATAAAGAAGGATATTTCTGG------AAAAAAATAAAAAATCTCCTTTCCTTCCAGAAGTGCTGCATGTTTTATGATTGCTGTTTGTAATAGTGAGCCTTTTGTCTGTTCTGAGGCTGGTTCCTTCC---
i chlSab2.chr17            I 1910 C 0
s manLeu1.NW_012099233v1      53558 385 +    290775 CCCTGCAGATGTGCAGTCAGGCATGGTCATTCCTGCTGGACATCAAGAAGGTGAAGGCTGAAAACCCAAGGAAGTACCAGGTATGGTCCTTCCACACTCAGCTAGAGCAGAACAAACAGGCCAGGCCGTGTCAGGAGCCCAGGTCTCTAGCTAGAGGAAAAGTCAAGCCTGGGTGATGGTCAGTCCCATATCCTAGGCACAGATGATGGCATGGGAACCACAAGTGAACTGGGCTCTGGTGAGCCTCCGTGGCTTTGGAAATAAGGTAAAGAAGGATATTTCTGG------AAAAAAA-AAAAATTCTCCTTTCCTTCCAGAAGTGCTGCATGTTTTATGATTGCTGTTTGTAATAGTGAGCCTTTTGTCTGTTCTGAGGCTGGTTCCTTCC---
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2486104 381 -   3067355 CCCTGCAGATGTGGAGTCAGGCATGGTCATTCCTGCTGGACATCAAGAAGGTGAAGGCTGAAAACCCAAGGAAGTACCAGGTATGGTCCTTCCATACTCAGCTAGAGCAGAACAAACAGGCCAGGTCATGTCAGGAGCCCAGGTCTCCAGCTAGAGGAAAAGTCAAGCCTGGGTGATGGTCAGTCCCATATCCTAGGCACAGACAATGGCATGGGAACCACAGGTGAAC-------TGGTGACCCTCCGTGGCTTTGGAAATCAGGTAAAGAAGGATATTTCTGG----GGGGAAAAA-AAAAAATCTCCTTTCCTTCCAGAAGTGCTGAATGTTTTATGATTGCTATTTGTAATAGTGAGCCTTTTGTCTGTTCTGAAGTTGATTCCTTCC-T-
i colAng1.NW_012115566v1   C 0 I 1
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964   0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e nomLeu3.chr1a            74488642   0 + 122973662 C
e gorGor5.CYUI01015250v1    5790042   0 +   6154872 C

a score=2019.000000
s hg38.chr6_GL000254v2_alt   786098 7 +   4827813 GAGGAAC
s panTro5.chr6             29753570 7 + 175400573 GAGGAAC
i panTro5.chr6             C 0 I 45
s panPan2.chr6             29988194 7 + 173848474 GAGGAAC
i panPan2.chr6             C 0 I 45
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964 0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e colAng1.NW_012115566v1    2486485 1 -   3067355 I
e manLeu1.NW_012099233v1      53943 0 +    290775 C
e chlSab2.chr17            28877958 0 -  71996105 C
e cerAty1.NW_012002711v1     419787 14 +    766320 I
e macNem1.NW_012011356v1    2667720 0 -   2996164 C
e macFas5.chr4             29624272 0 - 170955103 C
e rheMac8.chr4             29960336 0 + 172585720 C
e nomLeu3.chr1a            74488642 0 + 122973662 C
e gorGor5.CYUI01015250v1    5790042 0 +   6154872 C

a score=1160.000000
s hg38.chr6_GL000254v2_alt   786105 9 +   4827813 CAGCCCTTT
s rheMac8.chr4             29960336 2 + 172585720 -------TC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29624272 2 - 170955103 -------TC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2667720 2 -   2996164 -------TC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28877958 2 -  71996105 -------TC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      53943 2 +    290775 -------TC
i manLeu1.NW_012099233v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964 0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e colAng1.NW_012115566v1    2486485 1 -   3067355 I
e cerAty1.NW_012002711v1     419787 14 +    766320 I
e nomLeu3.chr1a            74488642 0 + 122973662 C
e gorGor5.CYUI01015250v1    5790042 0 +   6154872 C
e panPan2.chr6             29988201 45 + 173848474 I
e panTro5.chr6             29753577 45 + 175400573 I

a score=49854.000000
s hg38.chr6_GL000254v2_alt   786114 25 +   4827813 AGCCCTGCCCTAAAGAAAATAAAGG
s rheMac8.chr4             29960338 25 + 172585720 AGCCCTGCCCTAAAGAAAATAAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29624274 25 - 170955103 AGCCCTGCCCTAAAGAAAATAAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2667722 25 -   2996164 AGCCCTGCCCTAAAGAAAATAAAGG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28877960 25 -  71996105 AGCCCTGCCCTAAAGAAAATAAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      53945 25 +    290775 AGCCCTGCCCTAAAGAAAATAAAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2486486 25 -   3067355 AGCCCTGCCCTAAAGAAAATAAAGG
i colAng1.NW_012115566v1   I 1 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964  0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e cerAty1.NW_012002711v1     419787 14 +    766320 I
e nomLeu3.chr1a            74488642  0 + 122973662 C
e gorGor5.CYUI01015250v1    5790042  0 +   6154872 C
e panPan2.chr6             29988201 45 + 173848474 I
e panTro5.chr6             29753577 45 + 175400573 I

a score=482.000000
s hg38.chr6_GL000254v2_alt   786139 5 +   4827813 AGCAG
s colAng1.NW_012115566v1    2486511 5 -   3067355 AGCAg
i colAng1.NW_012115566v1   C 0 I 3146
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964 0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e manLeu1.NW_012099233v1      53970 0 +    290775 C
e chlSab2.chr17            28877985 0 -  71996105 C
e cerAty1.NW_012002711v1     419787 14 +    766320 I
e macNem1.NW_012011356v1    2667747 0 -   2996164 C
e macFas5.chr4             29624299 0 - 170955103 C
e rheMac8.chr4             29960363 0 + 172585720 C
e nomLeu3.chr1a            74488642 0 + 122973662 C
e gorGor5.CYUI01015250v1    5790042 0 +   6154872 C
e panPan2.chr6             29988201 45 + 173848474 I
e panTro5.chr6             29753577 45 + 175400573 I

a score=0.000000
s hg38.chr6_GL000254v2_alt   786144 16 +   4827813 GGCTCCTATACAGGGC
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964  0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e colAng1.NW_012115566v1    2486516 3146 -   3067355 I
e manLeu1.NW_012099233v1      53970  0 +    290775 C
e chlSab2.chr17            28877985  0 -  71996105 C
e cerAty1.NW_012002711v1     419787 14 +    766320 I
e macNem1.NW_012011356v1    2667747  0 -   2996164 C
e macFas5.chr4             29624299  0 - 170955103 C
e rheMac8.chr4             29960363  0 + 172585720 C
e nomLeu3.chr1a            74488642  0 + 122973662 C
e gorGor5.CYUI01015250v1    5790042  0 +   6154872 C
e panPan2.chr6             29988201 45 + 173848474 I
e panTro5.chr6             29753577 45 + 175400573 I

a score=296440.000000
s hg38.chr6_GL000254v2_alt    786160 159 +   4827813 TCTCACTGTAAAGCAACTGCGGGAGAGTGAGCCCCAGGGAAGGACCAGCCCCATCCTCATCCACCACAGGTTATCAGTCCAGGTGGCCACTTAGGGAAGGGAAGAGGGTCTTTCTATGGGCTCACACTCAGGAGGGCCTAGGATTTGGGAGCAGAGGGA
s rheMac8.chr4             142626844 158 - 172585720 TCTCACTGTAAAGCAACTGTGGGAGAGTGAGCCCCAGGGAAGGACCAGCCCCACCCTCATCTACCCCAGG-TATCAGTCCAGGAGGCCACATAGGGAAGGGAAGAGGGTCTTTCTATGGGCTCACCCGCAGGAGGGCCTAGGACTCGGGAGCAGAGGGA
i rheMac8.chr4             T 6034 C 0
s macFas5.chr4             141332291 158 + 170955103 TCTCACTGTAAAGCAACTGCGGGAGAGTGAGCCCCAGGGAAGGACCAGCCCCACCCTCATCTACCCCAGG-TATCAGTCCAGGAGGCCACATAGGGAAGGGAAGAGGGTCTTTCTATGGGGTCACCCGCAGGAGGGCCTAGGACTCGGGAGCAGAGGGA
i macFas5.chr4             T 6040 n 0
s macNem1.NW_012011356v1      329921 158 +   2996164 TCTCACTGTAAAGCAACTGCGGGAGAGTGAGCCCCAGGGAAGGACCAGCCCCGCCCTCATCTACCCCAGG-TATCAGTCCAGGAGGCCACATAGGGAAGGGAAGAGGGTCTTTCTATGGGCTCACCCGCAGGAGGGCCTAGGACTTGGGAGCAGAGGGA
i macNem1.NW_012011356v1   n 0 C 0
s cerAty1.NW_012002711v1      348000 158 -    766320 TCTCCCTGTAAAGCAACTGCGGGAGAGTGAGCCCCAGGGAAGGACCAGCCCCACCCTCATCTACCCCAGG-TATCAGTCCAGGAGGCCACATAGGGAAGGGAAGAGGGTCTTTCTATGGGCTCACCCTCAGGAGGGCCTAGGACTCGGGAGCAGAGGGA
i cerAty1.NW_012002711v1   n 14 C 0
s chlSab2.chr17             43119615 158 +  71996105 TCTCACTGCAAAGCAACTGCAGGAGAGTGAGCCCCAGGGAAGGACCAGCCCCGCCCTCATCTACCCCATG-CATCAGTCCAGGAGGCCACATAGGGAAGGGAAGAGGGTCTTTCTATGGGCTCACCCGCAGGAGGGCCTAGGACTCGGGAGCAGAGGGA
i chlSab2.chr17            n 0 C 0
s manLeu1.NW_012099233v1      238298 158 -    290775 TCTCCCTGTAAAGCAACTGCGGGAGAGTGAGCCCCAGGGAAGGACCAGCCCCACCCTCATCTACCCCAGG-TATCAGTCCAGGAGGCCACATAGGGAAGGGAAGAGGGTCTTTCTATGGGCTCACCCTCAGGAGGGCCTAGGACTCGGGAGCAGAGGAA
i manLeu1.NW_012099233v1   n 0 C 0
e mm10.chr17                57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1      562336 62472 +    730504 T
e saiBol1.JH378357             63964   0 -    242197 C
e otoGar3.GL873550             17838 8883 +  18854210 I
e aotNan1.NW_018509740v1      107251 1206 -    457564 I
e cebCap1.NW_016108310v1       94789 1246 +    106389 I
e colAng1.NW_012115566v1     2486516 3146 -   3067355 I
e nomLeu3.chr1a             74488642   0 + 122973662 C
e gorGor5.CYUI01015250v1     5790042   0 +   6154872 C
e panPan2.chr6              29988201  45 + 173848474 I
e panTro5.chr6              29753577  45 + 175400573 I

a score=3000.000000
s hg38.chr6_GL000254v2_alt    786319 2 +   4827813 GC
s rheMac8.chr4             142627002 2 - 172585720 GC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1      330079 2 +   2996164 GC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1      348158 2 -    766320 GC
i cerAty1.NW_012002711v1   C 0 n 0
s chlSab2.chr17             43119773 2 +  71996105 GC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      238456 2 -    290775 GC
i manLeu1.NW_012099233v1   C 0 C 0
e mm10.chr17                57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1      562336 62472 +    730504 T
e saiBol1.JH378357             63964 0 -    242197 C
e otoGar3.GL873550             17838 8883 +  18854210 I
e aotNan1.NW_018509740v1      107251 1206 -    457564 I
e cebCap1.NW_016108310v1       94789 1246 +    106389 I
e colAng1.NW_012115566v1     2486516 3146 -   3067355 I
e macFas5.chr4             141332449 0 + 170955103 I
e nomLeu3.chr1a             74488642 0 + 122973662 C
e gorGor5.CYUI01015250v1     5790042 0 +   6154872 C
e panPan2.chr6              29988201 45 + 173848474 I
e panTro5.chr6              29753577 45 + 175400573 I

a score=1365.000000
s hg38.chr6_GL000254v2_alt    786321 1 +   4827813 A
s rheMac8.chr4             142627004 1 - 172585720 A
i rheMac8.chr4             C 0 n 0
s macNem1.NW_012011356v1      330081 1 +   2996164 A
i macNem1.NW_012011356v1   C 0 n 0
s cerAty1.NW_012002711v1      419801 1 +    766320 A
i cerAty1.NW_012002711v1   I 14 C 0
s chlSab2.chr17             43119775 1 +  71996105 A
i chlSab2.chr17            C 0 n 0
s manLeu1.NW_012099233v1      238458 1 -    290775 A
i manLeu1.NW_012099233v1   C 0 n 0
e mm10.chr17                57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1      562336 62472 +    730504 T
e saiBol1.JH378357             63964 0 -    242197 C
e otoGar3.GL873550             17838 8883 +  18854210 I
e aotNan1.NW_018509740v1      107251 1206 -    457564 I
e cebCap1.NW_016108310v1       94789 1246 +    106389 I
e colAng1.NW_012115566v1     2486516 3146 -   3067355 I
e macFas5.chr4             141332449 0 + 170955103 I
e nomLeu3.chr1a             74488642 0 + 122973662 C
e gorGor5.CYUI01015250v1     5790042 0 +   6154872 C
e panPan2.chr6              29988201 45 + 173848474 I
e panTro5.chr6              29753577 45 + 175400573 I

a score=803.000000
s hg38.chr6_GL000254v2_alt    786322 11 +   4827813 GAAAATAAAGC
s cerAty1.NW_012002711v1      419802 11 +    766320 GAAAATAAAGG
i cerAty1.NW_012002711v1   C 0 C 0
e mm10.chr17                57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1      562336 62472 +    730504 T
e saiBol1.JH378357             63964  0 -    242197 C
e otoGar3.GL873550             17838 8883 +  18854210 I
e aotNan1.NW_018509740v1      107251 1206 -    457564 I
e cebCap1.NW_016108310v1       94789 1246 +    106389 I
e colAng1.NW_012115566v1     2486516 3146 -   3067355 I
e manLeu1.NW_012099233v1      238459  0 -    290775 I
e chlSab2.chr17             43119776  0 +  71996105 I
e macNem1.NW_012011356v1      330082  0 +   2996164 I
e macFas5.chr4             141332449  0 + 170955103 I
e rheMac8.chr4             142627005  0 - 172585720 I
e nomLeu3.chr1a             74488642  0 + 122973662 C
e gorGor5.CYUI01015250v1     5790042  0 +   6154872 C
e panPan2.chr6              29988201 45 + 173848474 I
e panTro5.chr6              29753577 45 + 175400573 I

a score=2824624.000000
s hg38.chr6_GL000254v2_alt   786333 1537 +   4827813 AGCAGGGCAAGATGTCCTCAGCGAAAATAAACCAGATTGACCTGGACATGAAGTGCACCTTCAGACACCATGTCATGTTTTGGGAGCACTACAGAGTCAGGTAAGGCCTATGGGGGATGGAGGGTCCCAGGGGAGACGGAGGAATTCAGAGGAATAGGGGCATCCCATGCAGGAGTCCAAGATAGGACGTGACAGAGCCCCCCAAGGGCTCTCTTGGCCAGGGAGCAGCCAGCATCACAGAGCATCTACTGAGCTCCAAACCATGGGCCGAGCTGGGGCATGTGGGTCCAGAACCCAAGTGGCTACTGAGGAAACAAGCGGTAGCAAACACAATCATGCTGCATGGTGAAAAGTTCTCTCTATGACCCACAAGTACCTGAGGTAGAGACCCACAAGAGGGGCTCAGACTTCACAGGCaacactgacaacaccaaacaccatagaggatgtggagccacaagaactctgtgcattgctgctgcaaaatgctgctgctgctgaatgcaaaatggtacagccgccttggaagacagttggg-aattgctcacaaagctaaatgtacttgtaccacgtgaccacaagtgtcatagacgttgacctagctgacttgaaaatgtatgtacacctaaaacctacatgtcacattcactgccttattcattatcactaaaacctagaagctactgagatgaccttcaacaCAGGTCCCAGGGGAGATGGAGGAATTCAGGGGAATGGGCGCATCCCATGAAATGAGGTTATACCTGTTTGGtataataaaattacaggttaaatctataaatataaattataattatagattatTAGGTTACATttatttggtataataaaattatacagtaggtattgtcaaatatgaaatTAATATCTAATGATTGTAttataccaaataaggcaaatatgtgtcttttggacttaaggggacctaatatcaaaaaaattaatg-agtcaaaaggactgaatttagaatttaattttgaaaaaatcaaatatcaaaactttaaaacacctgctatcacaaaataggatcattggtcattggtcattgtaaaataagtcattcatttaaccaaagtgataactcaaagatttc-----------------aaaaaaaaaaaagtcaaaagacaaaaccattactctttgagagaggagacttaattttccaaacaataagccctaataaagatagcatgaggccaatgaaatctgtttctcaaatcttataaacaaatctattaaattttaatgatcttcaccatactatataatttccaaaaacctttttgtaacattttataattttttaaatgaaaaagtgggttaatactccaagaaaaccttgttaatctgacacaggagctcagaggttagtcttgcatcagtgagcctttgatactaatctttacagagaaactgtaaccaagataaaaccaattttatctttcaaaataggctcttacaatcgcatgtacccacatcttccacaatagcccctggactttgaggggtaagatagtttcaatttct
s rheMac8.chr4             29960363 1544 + 172585720 AGCAGGGCAAGATGTCCTCAGTGAAAATAAACCAGATTGACCTGGACATGAACTGCACCTTCAGACACCATGTCATGTTTTAGGAGCGCTACAGAGTCAGGTAAGACCTATGGGGGATGGAGGGTCCCAGGGGAGATGGAGGAATTCAGAGGAATAGGGGCATTCCATGCAGGAGTCCAAGATAGGAGGTGACACAGTCCCCCAAGGGATCTCCTGGCCAGGGAGCAGTCAGCATCATCGAGCATCTACTGAGCTCCAAACCACGGGCCAAGCTGGGGCATGTGGGTCCAGAATCCAGGTGGCTACTGAGGAAACAAGCAGTAGCAAACAAAATCATGCTGCATGGTGAAAAGTTCTCTCCATAACCCACAAGTACCTGGAGtagacacccgcgagaggggctcagacttcacaggcaacactgacaacaccaaacaccatggaggaggtggagccgc-agaactctgtccatcgctgctgcaaaatgctgctactgctgaatgcaaaatggtacagcctccttggaagacagttgggaaattgctcacaaagctaaatgtacttgtaccacatgaccataagtgtcatagacattgacctagctgacttgaaaatttatgtccaactaaaacctacatgtcacattcactgctttattcattatcactaaaacctagaagctactgagatgaccttcaacaCAGGTCCCAGGGGAGATGGAGGAATTCAGAGGAATGGGTGCATCCCACAAAATTAGGTTATACTTCTTTGGTATAATAAAATTACAGGTTAAATCTATAAATATAAATTATAAGTATAGATtattaggttgtacttatttggtataataaaattatacagtaagtattgtcaaatgtgaaattaatatctaaTGATTGTGttataccaaataagccaaatatgtgtcttttggacttaaggggacctaatatcaaaaaaattaatgaagtcaaaaggactgaatttagaatttaattttgaaaaagtcaaatatcaaaactttaaaacacttgatatcacaaaataggatcataggtcattggtcattgtaaaataaatcattcatttagccaaagtggaaactcaaagatttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaacgcaaaaggcaaaaacattactctttgagagaggagacttaatttcccaaacaataagccctaataaagatagcacgaggccagtgaactctgtctctcaaatcttacaaacaaatctattaaattttaatcatcttgaccataatatataatttccataaacctttttataacattttataatttttt-aatgaaaaagtaggttaatactccaagaaaaccttgctagtctgacacaggggctcagaggctagtctcgcatcagtgaggctttgatactaatgtttatagagaaactct----------gaaccaattttatctttcaaaataggcccttacaatctcaggcacccacatcttccacaatagcccctggactttgagaggtaaaatagttccaatttct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29624299 1544 - 170955103 AGCAGGGCAAGATGTCCTCAGTGAAAATAAACCAGATTGACCTGGACATGAACTGCACCTTCAGACACCATGTCATGTTTTAGGAGCGCTACAGAGTCAGGTAAGACCTATGGGGGATGGAGGGTCCCAGGGGAGATGGAGGAATTCAGAGGAATAGGGGCATTCCATGCAGGAGTCCAAGATAGGAGGTGACACAGTCCCCCAAGGGATCTCCTGGCCAGGGAGCAGTCAGCATCACCGAGCATCTACTGAGCTCCAAACCACGGGCCAAGCTGGGGCATGTGGGTCCAGAATCCAGGTGGCTACTGAGGAAACAAGCAGTAGCAAACAAAATCATGCTGCATGGTGAAAAGTTCTCTCCATAACCCACAAGTACCTGGGGTAGAGACCCACGAGAGGGGCTCAGACTTCACAGGCaacactgacaacaccaaacaccatggaggaggtggagccgc-agaactctgtccatcgctgctgcaaattgctgctactgctgaatgcaaaatggtacagcctccttggaagacagttgggaaattgctcacaaagctaaatgtacttgtaccacatgaccataagtgtcatagacattgacctagctgacttgaaaatttatgtccaactaaaacctacatgtcacattcactgctttattcattatcactaaaacctagaagctactgagatgaccttcaacaCAGGTCCCAGGGGAGATGGAGGAATTCAGAGGAATGGGTGCATCCCACAAAATTAGGTTATACTTCTTTGGTATAATAAAATTACAGGTTAAATCTATAAATATAAATTATAAGTATAGATtattaggttgtacttatttggtataataaaattatacagtaagtattgtcaaatgtgaaattaatatctaaTGATTGTGttataccaaataagccaaatatgtgtcttttggacttaaggggacctaatatcaaaaaaattaatgaagtcaaaaggactgaatttagaatttaattttgaaaaagtcaaatatcaaaactttaaaacacttgatatcacaaaataggatcataggtcattggtcattgtaaaataaatcattcatttagccaaagtggaaactcaaagatttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaacgcaaaaggcaaaaacattactctttgagagaggagacttaatttcccaaacaataagccctaataaagatagcacgaggccagtgaactctgtctctcaaatcttacaaacaaatctattaaattttaatcatcttgaccataatatataatttccataaacctttttataacattttataatttttt-aatgaaaaagtaggttaatactccaagaaaaccttgctagtctgacacaggggctcagaggctagtctcgcatcagtgaggctttgatactaatgtttatagagaaactct----------gaaccaattttatctttcaaaataggcccttacaatctcaggcacccacatcttccacaatagcccctggactttgagaggtaaaatagttccaatttct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2667747 1532 -   2996164 AGCAGGGCAAGATGTCCTCAGTGAAAATAAACCAGATTGACCTGGACATGAACTGCACCTTCAGACACCATGTCATGTTTTAGGAGCGCTACAGAGTCAGGTAAGACCTATGGGGGATGGAGGGTCCCAGGGGAGATGGAGGAATTCAGAGGAATAGGGGCATTCCATGCAGGAGTCCAAGATAGGAGGTGGCACAGTCCCCCAAGGGATCTCCTGGCCAGGGAGCAGTCAGCATCACCGAGCATCTACTGAGCTCCAAACCACGGGCCAAGCTGGGGCATGTGGGTCCAGAATCCAGGTGGCTACTGAGGAAACAAGCAGTAGCAAACAAAATCATGCTGCATGGTGAAAAGTTCTCTCCATAACCCACAAGTACCTGGGGTAGAGACCCACGAGAGGGGCTCAGACTTCACAGGCaacactgacaacaccaaacaccatggaggaggtggagccgc-agaactctgtccatcgctgctgcaaaatgctgctactgctgaatgcaaaatggtacagcctccttggaaaacagttgggaaattgctcacaaagctaaatgtacttgtaccacatgaccataagtgtcatagacattgacctagctgacttgaaaatttatgtccaactaaaacctacatgtcacattcactgctttattcattatcactaaaacctagaagctactgagatgaccttcaacaCAGGTCCCAGGGGAGATGGAGGAATTCAGAGGAATGGGTGCATCCCACAAAATTAGGTTATACTTCTTTGGTATAATAAAATTACAGGTTAAATCTATAAATATAAATTATAAGTATAGATtattaggttgtacttatttggtataataaaattatacagtaagtattgtcaaatgtgaaattaatatctaaTGATTGTGttataccaaataagccaaatatgtgtcttttggacttaaggggacctaatatcaaaaaaattaatgaagtcaaaaggactgaatttagaatttaattttgaaaaagtcaaatatcaaaactttaaaacacctgatatcacaaaataggatcataggtcattggtcattgtaaaataaatcattcatttagccaaagtggaaactcaaagatttc------------aaaaaaaaaaaaaaaaacgcaaaaggcaaaaccattactctttgagagaggagacttaatttcccaaacaataagccctaataaagatagcacgaggccagtgaactctgtctctcaaatcttacaaacaaatctattaaattttaatcatcttgaccataatatataatttccataaacctttttataacattttatgatttttt-aatgaaaaagtaggttaatactccaagaaaaccttgctagtctgacacaggggctcagaggctagtctcgcatcagtgaggctttgatactaatgtttatagagaaactct----------gaaccaattttatctttcaaaataggcccttacaatctcaggcacccacatcttccacaatagcccctggactttgagaggtaaaatagttccaatttct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     419813 1530 +    766320 AGTAGGGCAGGATGTCCTCAGTGAAAATAAACTAGATTGACCTGGACATGAACTGCACCTTCAGACACCATGTCATGTTTTAGGAGCGCTACAGAGTCAGGTAAGACCTACGGGGGATGGAGGGTCCCAGGGGAGATGGAGGAATTCAGAGAAATAGGGGCATTCCATGCAGGAGTCCAAGATAGGAGGTGACACGGTCCCCCAAGGGATCTCCTGGCCAGCGAGCAGTCAGCATCACAGAGCATCTACTGAGCTCCAAACCACGGGCCAAGCTGGGGCGTGTGGGTCCAGAATCCAGGTGGCTACTGAGGAAACAAGCAGTAGCAAACAAAATCATGCTGCATGGTGAAAAGTTCTCTCCATAACCCACAAGTACCTGGGGTAGAGACCCATGAGAGGGGCTCAGACTTCACAGGCaacactgacaacaccaaacaccatggaggaggtggagccgc-agaactctgtccattgctgctgcaaaatgctgctactgctgaatgcaaaatggtacagcctccttggaagacagttgggaaattgctcacaaagctaaatgtacttgtaccacatgaccataagtgtcatagacattgaccgagctgacttgaaaatttatgtccagctaaaacctacatgtcacattcactgctttattcattatcactaaaacctagaaactactgagatgaccttcaacaCAGGTCCCAGGGGAGATGGAGGAATTCAGAGGAATGGGCGCATCCCACAAAATTAGGTTATACTTCTTTGGtataataaaattacaggttaaatctataaatataaattataattatagattatTAGGTTGTActtatttggtataataaaattatacagtaagtattgtcaaatatgaaattaatatctaaTGATTGTGtcgtaccaaataagccaaatatgtgtattttggacttaaggggacctaatatgaaaaaaattaatgaagtcaaaaggactgaatttagaatttaattttgaaaaagtcaaatatcaaaactttaaaacacctgatatcacaaaataggatcataggtcattggtcattataaaacaagtcattcatttagccaaagtggtaactcaaagattt----------aaaaaaaaaaaaaaaaaaaacgcaaaaggcaaaaccattactctttgagagaggagacttaatttcctaaacaataagccctaataaagatagcacaaggccagtgaaatctgtctctcaaatctt----acaaatctattaaattttaatcatcttgaccataatatacaatttccataaatctttttataacattttataatttttt-aatgaaaaagtgggttaatactccaagaaaaccttgctagtctgacacaggggctcagaggctagtctcgcatcagtgaggctttgatactgatgtttatagagaaactct----------gaaccaattttatctttcaaaataggctcttacaatctcaggcacccacatcttccacaatagcccctggactctgaggggtaaaatagtttcaatttct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28877985 1527 -  71996105 AGCAGGGCAAGATGTCCTCAGTGAAAATAAACCAGATTGACCTGGATGTGAACTGCACCTTCAGACACCATGCCATGTTTTGGGAGCCCTACAGAATCAGGTAAGACCTATGGGGGATGGAGGGTCCCAGGGGAGATGGAGGAATTCAGAGGAATAGGGGCATTCCATGCAGGAGTCCAAGATAGGAGGTGACACTGTCCCCCAAGGGATCTCCTGGCCAGGGAGCAGTCAGCATCACAGAGCATCTACTGAGCTCCAAACCATGGGCCAAGCTGGGGCATGTGGGTCCAGAATCCAGGTGGCTACTGAGGAAACAAGCAGTAGCAAACAAAATCATGCTGCATAGTGAAAAGTTATCTCCATAACCCACAAGTACCTGGGGTAGAGACCCACGAGAGGGACTCAGACTTCATAGGCaacactgacaacaccaaacaccatggaggaggtggagccgc-agaactctgtccattgctgctgcaaaatgctgctactgctgaatgcaaaatggtacagcctccttggaagacagttggaaaacggcttacaaagctaaatgtacttgtaccacatgaccataagtgtcatagacattgacctagctgacttgaaaatttatgtccaactaaaacctacatgtcacattcactgctttattcattatcactaaaacctagaaactactgagatgactttcaacaCAGGTCCCAGGGGAGATGGAAGAATTCAGAGGAATGGGTGCATCCCACAAAATTAGGTTATACTTCTTTGGTATAATAAAATTACAGGTTAAATCTGTAAATATA------AATTATAGATtattaggttgtacttatttggtataataaaattatgcagtaagtattgccaaatatgaaattaatatctaaTGATTGTGttataccaaataagccaaatatgtgtcttttggacttaaggggacctaatacgaaaaaaattaatgaagtcaaaaggactgaatttagaatttaattttgaaaaagtcaaatatcaaaacttcaaaacacctgatatcacaaaataggatcataggtcattggtcattgtaaaataagtcattcatttagccaaagtggtaactcaaagatttc-------aaaaaacaaaaaacaaaaaaaaaggaaaaggcaaaaccattactctttgagagaggagacttaatttcccaaacaataagccctaataaagatagcacgaggccagtgaaatctgtctctcaaatctt----acaaatctattaaattttaatcatcttgaccataatatacaatttccataaatctttttataacattttacaatttttt-aatgaaaaagtgggttaatactccaagaaaatcttgctagtctgacacaggggctcagaggctagtctcgcatcagtgaggctttgatactgatgtttatagagaaactct----------gaaccaattttatctttcaaaataggcccttacaatctcaggcacccacatcttccacaatagcccctggactttgaggggtaaaatagtttcaatttct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      53970 1531 +    290775 AGCAGGGCAGGATGTCCTCAGTGAAAATAAACTAGATTGACCTGGACATGAACTGCACCTTCAGACACCATGTCATGTTTTAGGAGCGCTACAGAGTCAGGTAAGACCTACGGGGGATGGAGGGTCCCAGGGGAGATGGAGGAATTCAGAGAAATAGGGGCATTCCATGCAGGAGTCCAAGATAGGAGGTGACACGGTCCCCCAAGGGATCTCCTGGCCAGCGAGCAGTCAGCATCACAGAGCATCTACTGAGCTCCAAACCACGGGCCAAGCTGGGGCGTGTGGGTCCAGAATCCAGGTGGCTACTGAGGAAACAAGCAGTAGCAAACAAAATCATGCTGCATGGTGAAAAGTTCTCTCCATAACCCACAAGTACCTGGGGTAGAGACCCATGAGAGGGGCTCAGACTTCACAGGCaacactgacaacaccaaacaccatggaggaggtggagccgc-agaactctgtccattgctgctgcaaaatgctgctactgctgaatgcaaaatggtacagcctccttggaagacagttgggaaattgctcacaaagctaaatgtacttgtaccacatgaccataagtgtcatagacattgaccgagctgacttgaaaatttatgtccagctaaaacctacatgtcacattcactgctttattcattatcactaaaacctagaaactactgagatgaccttcaacaCAGGTCCCAGGGGAGATGGAGGAATTCAGAGGAATGGGCGCATCCCACAAAATTAGGTTATACTTCTTTGGtataataaaattacaggttaaatctataaatataaattataattataGATtattaggttgtacttatttggtataataaaattatacagtaagtattgtcaaatatgaaattaatatctaaTGATTGTGtcgtaccaaataagccaaatatgtgtattttggacttaaggggacctaatatgaaaaaaattaatgaagtcaaaaggactgaatttagaatttaattttgaaaaagtcaaatatcaaaactttaaaacacctgatatcacaaaataggatcataggtcattggtcattataaaataagtcattcatttagccaaagtggtaactcaaagattt---------aaaaaaaaaaaaaaaaaaaaacgcaaaaggcaaaaccattactctttgagagaggagacttaatttcctaaacaataagccctaataaagatagcacaaggccagtgaaatctgtctctcaaatctt----acaaatctattaaattttaatcatcttgaccataatatacaatttccataaatctttttataacattttataatttttt-aatgaaaaagtgggttaatactccaagaaaaccttgctagtctgacacaggggctcagaggctagtctcgcatcagtgaggctttgatactgatgtttatagagaaactct----------gaaccaattttatctttcaaaataggctcttacaatctcaggcacccacatcttccacaatagcccctggactctgaggggtaaaatagtttcaatttct
i manLeu1.NW_012099233v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964    0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e colAng1.NW_012115566v1    2486516 3146 -   3067355 I
e nomLeu3.chr1a            74488642    0 + 122973662 C
e gorGor5.CYUI01015250v1    5790042    0 +   6154872 C
e panPan2.chr6             29988201   45 + 173848474 I
e panTro5.chr6             29753577   45 + 175400573 I

a score=2247494.000000
s hg38.chr6_GL000254v2_alt   787870 957 +   4827813 ggccctgtgtttcatgagtgcagtttcttttgattatcatcttctcctggttctgaagatacggttttagaagctttcagtgtttaagatttagcaggacttggtgtcctttttagatacaggagtcaaagccctgtaactcaacagaacaaggactttaaaagcaatacagaacattgtatgg-atgttaataactttaattttttaaatctcagttttcctaggcaaataaaaaactt------aatgacataggaattgtttcaataaaatataaaatctgtttgttaggccagttaccaaaaggcaaaaaataaataaaagacct---gcagcaattgcttttccc-------------------tagacttcaagtcaaaactaatgaaaatggtacttgaattagttagatataggaagggtgtgtcttgcatcataagtgaaaattttcagtttcatagaaaaacttcaaaccaagagcacagaatgttatattggaagaaaatatttcctttagacctttaagataaaacacttttagcatcatgtcacagtagcagttagaacctgaggaaaaaaaattatagaaactgacaagaaagttggagagagcgattatctcaggactta-tgaaggggagagaaaggtgaaaacagtgagattcaataaaagttgaaatctggggtaaaaaaattaaaatatcttgtaatttgttaagagtaaattaatatcttaagaaaattttgttcttctagcccattcttgagtggattagcatatttttaatatacactaagtgcaaaagcacagtctctagaaagactaatttccttttaattatagccaacttgatcaaataaattcttttctcataaagtctctttttacaaaccttactatgacttacacaagccacttatgacatgcctagacttcctgttttatcctaaacagc-ttctttcctaaataaccaatcatttt
s nomLeu3.chr1a            74488642 948 + 122973662 GAtcctgtgtttcatgagtgcagtttcttttgattatcatcttctcccagttctgaagataaggttttagaagctttcagtgtttaagatttagcaggacttggtgtcctttttagatgcaggagtcaaagc------actcaacagaacaaggactttaaaagcaatacagaacattatatgg-atgttaataactttaattttttaaatctcagttttcctaggcaaataaaaaactt------agtgacatatgaattgtttcaataaaatataaaatctgtttgttaggccagttaccaaaaggcaaaaaacaaataaaagaccttctgcaacaattgcttttccc-------------------tagccttcaagtcaaaactaatgaaaatgatacttgaattacttagatataggaagggtgtgtcttgtgtcataagtgaaaattttcagtttcatagaacaacttcaaaccaagagcacagaatgttatattggaagaaaatatttcctttagacctttaagataaaacacttttagcatcatgtcacagtagcagttagaacctgaggaaaaaaaattatagaagctgacaagaaagttggagagagctattatctcaggactta-tgaaggggagagaaaggtgcaaacagtgagattcaataaaagttgaaatctggggtaaaaaaattaaaatgtcttgtaatttgttaagagtaaattaatatcttaagaaaattttgttcttctagcccattcttgagtggattagcgtatttttaatatacactaagtgcaaaagcacaatctctagaaagactaatttccttttaattatagccaacttgatcaaataaattcttttctcataaagtctctttttacgagccttactatgacttacacaagccacttatgacgtgcctagactt-------tatcctaaacatccttctttcctaaataatcaatcatttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29961907 950 + 172585720 ggcgctgtgtcttatgagtgcagtttcttttgattatcatcttctcccggttctgaagataaggttttagaagctttcagtgtttaagatttagcaggacttggtgtccttcttagatgcaggagtcaaagccctgtaactcaacagaacaaggactttaaaagcaatacagaacattataaggaatgttaataactttaatttttgaaatctcaattttcctaggcaaataaaaaacttaataacaatgccataggaattgtttcaataaaatataaaatctgtttgttaggccagttgccaaaaggcaaaaaataaataaaagaccttctgcagtgattgcttttccctatggaaagtccatttagatagccttcaagtcaaaactaatgaaaatggtacttgaatgaattagatataggaagggtgtgtcttgggtcataagttaaaattttcagtttcatagaacaacttcaagccaagagcacagaccgctatattggaagaaaatatttcctttagatctttaagataaaacacttttagcatcatgtcacagtagcagttagaacctgagg-aaaaaaattatagaaactgacaagaaagttggagagagctattatctcaggacttcttgaaggggagagaaaggtgaaaacagtgagattcaataaaagttgaaatctggggtaaa------------------------tttagagtaaattaatatcttaagaaaactttgttcttctagcccattcttgagtgggttagcgtatttttaatat-----------caaagcacaatctctagaaagactaatttccttttaattatagccaacttgatcaaataaattcttttctcat--agtctctttttacaaaccttactatgacctacacaagccatttatgacatgcctagacttcctgttttatcctaaacatccttctttcctaaataaccagtcatttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29625843 950 - 170955103 ggcgctgtgtcttatgagtgcagtttcttttgattatcatcttctcccggttctgaagataaggttttagaagctttcagtgtttaagatttagcaggacttggtgtccttcttagatgcaggagtcaaagccctgtaactcaacagaacaaggactttaaaagcaatacagaacattatatggaatgttaataactttaatttttgaaatctcaattttcctaggcaaataaaaaacttaataacaatgccataggaattgtttcaataaaatataaaatctgtttgttaggccagttgccaaaaggcaaaaaataaataaaagaccttctgcagtgattgcttttccctatggaaagtccatttagatagccttcaagtcaaaactaatgaaaatggtacttgaatgagttagatataggaagggtgtgtcttgggtcataagttaaaattttcagtttcatagaacaacttcaagccaagagcacagaccgctatattggaagaaaatatttcctttagatctttaagataaaacacttttagcatcatgtcacagtagcagttagaacctgagg-aaaaaaattatagaaactgacaagaaagttggagagagctattatctcaggacttcttgaaggggagagaaaggtgaaaacagtgagattcaataaaagttgaaatctggggtaaa------------------------tttagagtaaattaatatcttaagaaaactttgttcttctagcccattcttgagtgggttagcgtatttttaatat-----------caaagcacaatctctagaaagactaatttccttttaattatagccaacttgatcaaataaattcttttctcat--agtctctttttacaaaccttactatgacctacacaagccatttatgacatgcctagacttcctgttttatcctaaacatccttctttcctaaataaccagtcatttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2669279 950 -   2996164 ggcgctgtgtcttatgagtgcagtttcttttgattatcatcttctcccggttctgaagataaggttttagaagctttcagtgtttaagatttagcaggacttggtgtccttcttagatgcaggagtcaaagccctgtaactcaacagaacaaggactttaaaagcaatacagaacattatatggaatgttaataactttaatttttgaaatctcaattttcctaggcaaataaaaaacttaataacaatgccataggaattgtttcaataaaatataaaatctgtttgttaggccagttgccaaaaggcaaaaaataaataaaagaccttctgcagtgattgcttttccctatggaaagtccatttagatagccttcaagtcaaaactaatgaaaatggtacttgaatgagttagatataggaagggtgtgtcttgggtcataagttaaaattttcagtttcatagaacaacttcaagccaagagcacagaccgctatattggaagaaaatatttcctttagatctttaagataaaacacttttagcatcatgtcacagtagcagttagaacctgagg-aaaaaaattatagaaactgacaagaaagttggagagagctattatctcaggacttcttgaaggggagagaaaggtgaaaacagtgagattcaataaaagttgaaatctggggtaaa------------------------tttagagtaaattaatatcttaagaaaactttgttcttctagcccattcttgagtgggttagcgtatttttaatat-----------caaagcacaatctctagaaagactaatttccttttaattatagccaacttgatcaaataaattcttttctcat--agtctctttttacaaaccttactatgacctacacaagccatttatgacatgcctagacttcctgttttatcctaaacatccttctttcctaaataaccagtcatttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     421343 952 +    766320 cgcactgtgtctcatgagtgcagtttcttttgattatcatcttctcccggttctgaagataaggttttagaagctttcagtgtttaagatttagcaggacttggtgttcttcttagatgcgggagtcaaagtcctgtaactcaacagaacaaggactttaaaagcaatacagaacattatatggaatgttaataactttaatttttttaatctcaattttcctaggcaaataaaaaacttaataacaatgacataggaattgtttcaataaaacataaaatctgtttgttcgaccagttgccaaaaggcaaaaaataaataaaagaccttctgcagtgattgcttttccctatggaaagtccatttagatagccttcaagttaaaactaatgaaaacggtacttgaatgagttagatataggaagggtgtgtcttgggtcataagtgaaaattttcggtttcatagaacaacttcaagccaagagcacagaccgctatattggaagaaaatatttcctttagatttttaagataaaacacttttagcatcatgtcacagtagcagttagaacctgagg-aaaaaaattatagaagctgacaagaaagttggagagagctattatctcaggacttcttgaaggggagagaaaggtgaaaacagtgagattcaataaaagttgaaatctggggtaaa------------------------tttagagtaaattaatatcttaagaaaactttattcttccagcccattcttgagtggattagcgtatttttaatat-----------caaagcacaatctctagaaagactaatttccttttaattatagccaacttgatcaaataaattcttttctcataaagtctctttttacaaaccttactatgacccacacaagtcatttatgacatgcctagacttcctgttttatcctaaacatccttctttcctaaataaccagtcatttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28879512 946 -  71996105 ggcgctgtgtctcatgagtgcagtttcttttgattatcatcttctcctggttctgaagataaggttttagaagctttcagtgtttaagatatagcaggacttggtgtccttcttagatgcaggagtcaaagtcctgtaactcaacagaacaaggactttaaaagcaatacagaacattatatggaatgttaataactttaattttttaaatctcaattttcctaggcaaataaaaaacttaataacaatgacataggaattgtttcaataaaatataaaatctgtttgttaggccagttgccaaaaggcaaaaaataaataaaagaccacctgcagtgattgcttttccctatggaacatccatttagatagccttcaagtcaaaactaatgaaaatggtacttgaatgagttagatataggaagggtatgtcttgggtcataagtgaaaattttcagtttcatagaacaacttcaagccaagagcacagaccgctatactggaagaaaatatttcctttagatttttaagataaaacagttttagcatcatgtca------cagttagaacctgagg-aaaaaaattatagaagctgacaagaaagttggagagagctattatctcaggatttcttgaaggggagagaaaggtgaaaacagtgagattcaataaaagttgaaatctggggtaaa------------------------tttagagtaaattaatatcttaagaaaactttgttcttctagcccattcttgagtgggttagcgtatttttaatat-----------caaagcacaatctctagaaagactagtttccttttaattatagccaacttgatcaaataaattcttttctcataaagtctctttttacaaaccttactacaacctacacaagccacttacgacatgcctagacttcctgttttatcctaaacatccttctttcctaaataaccagtcatttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      55501 952 +    290775 ggcactgtgtctcatgagtgcagtttcttttgattatcatcttctcccggttctgaagataaggttttagaagctttcagtgtttaagatttagcaggacttggtgtccttcttagatgcgggagtcaaagtcctgtaactcaacagaacaaggactttaaaagcaatacagaacattatatggaatgttaataactttaatttttttaatctcagttttcctaggcaaataaaaaacgtaataacaatgacataggaattgtttcaataaaacataaaatctgtttgttcgaccagttgccaaaaggcaaaaaataaataaaagaccttctgcagtgattgcttttccctatggaaagtccatttagatagccttcaagttaaaactaatgaaaacggtacttgaatgagttagatataggaagggtgtgtcttgggtcataagtgaaaattttcggtttcatagaacaacttcaagccaagagcacagaccgctatattggaagaaaatatttcctttagatttttaagataaaacacttttagcatcatgtcacagtagcagttagaacctgagg-aaaaaaattatagaagctgacaagaaagttggagagagctattatctcaggacttcttgaaggggagagaaaggtgaaaacagtgagattcaataaaagttgaaatctggggtaaa------------------------tttagagtaaattaatatcttaagaaaactttattcttccagcccattcttgagtggattagcgtatttttaatat-----------caaagcacaatctctagaaagactaatttccttttaattatagccaacttggtcaaataaattcttttctcataaagtctctttttacaaaccttactatgacctacacaagccatttatgacatgcctagacttcctgttttatcctaaacatccttctttcctaaataaccagtcatttt
i manLeu1.NW_012099233v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964   0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e colAng1.NW_012115566v1    2486516 3146 -   3067355 I
e gorGor5.CYUI01015250v1    5790042   0 +   6154872 C
e panPan2.chr6             29988201  45 + 173848474 I
e panTro5.chr6             29753577  45 + 175400573 I

a score=5229717.000000
s hg38.chr6_GL000254v2_alt   788827 1667 +   4827813 atcttctttttcttttttttaagatttc---tttgttgttgctgctgttgttgctgctgttgtttccttgagacaaggtctctctctctgtgtcacccaggctggggtgtagtggcatgatcacagctcactgcagccttgacccacccaggctcaagcaatcctcccatttcaacctcccaggtagctgggactatagatgtgcaccagcatactcagttaattttctgtgttttttgtatagacagggttttaccatgttgcccaggctggtctggaactcccaggctcaagcaatctgctcacctcagccttacaaagtgctaggattacatgcatgagctatttgcatccagccattttattttagaacaaacatttaccatgcaagatttttttctcatataaaattttccttttaacctttcttaccaaaaatatctctttatatttttaactgtctttatatcgctcttatttagtggttccttttatcttgtttcataacctttaaataacctttgaattcaacaaaaattattttcctttaaataagaacatattcttagcaaaatgtttttctgtaatttttttaattgtgaatgacccagacatttaataaatgcctgttatgtaatataactttagattctaaattatattatgcttatttacaagcattccttccattacatttaccta----acttatttttaatagtttacctagattacttatgaaaactgtgataatcaacatttaaaggtattttcctgttaatcatttatatagcctgtgaatttcaggtgtttacctaagtaagaagcttaaggttaaacaaatgagtttttcgccaataactcaggataaatgacttatttatcaaaaaaaattacacaaggataattatcttttgagttacatttataattttataaccgtcatgccaaattttgacaccttatgta---ta---ttagcatttaatcaagctgacttttaaccactgagctttaaaaatcctttaaaatctcattgctgtaaccgagtacacccattttcctgagacatcaa-ttattattttt--tttctttccttttcttgttccttcagttccccactccctacttaggcttttaggaatgcaaatatagccttttacctccccattaccggactctccctacagtgcaagttcatctaactacacgctcaaactggaaagtcaacttgagaattaacagttgatttataaaccaatcatgcccactgtggaactctcactctttaggaggttgtctcaagagataacagcctgcccatgaaggtgccagcagtcacaagctgattgccccgtagataaggcacaagagctagcatggaccccccgccaccacccttgctcacttcctcccctgctttttaaaagtgaagccatatggaggacacctgcatttcttcccctaagctagttttggaaataaattactttctttataccagacttcacttttgttaattggactctgcaagcaacaagcgactaacctgcattttggttacattaccatgttttaggtgggacaaacttctaatatttcaaatgtaacacaaatatcaaaccagtaaagactttatttaggaaccaaacccaggctgccatggtggaaaaagggcagaa
s gorGor5.CYUI01015250v1    5790042 1666 +   6154872 ATCTTCTTTTTCTTTTTTTTAAGATTTC---Tttgttgttgctgttgttgttgctgctgttgtttccttgagacaaggtctctctctctctgtcacccaggctggggtgtagtggcatgatcacagctcactgcagccttgacccacccaggctcaagcaatcctcccatttcaacctcccaggtagctgggagtatagatgtgcaccagcatactcagttaattttctgtgttttttgtatagacagggttttaccatgttgcccaggctggtctggaactcccaggctcaagcagtctgctcacctcagccttacaaagtgctaggattacatgcatgagctatttgcacccagccattttattttagaacaaacatttaccatgcaagatttttttctcatataaaattttccttttaacctttcttaccaaaaatatctctttatatttttaactgtctttatatcgctcttatttagtggttccttttatcttgtttcataacctttaaataacctttgaattcaacaaaaattattttcctttaaataagaacatattcttagcaaaatgtttttctgtaatttttttaattgtgaatgacccagacatttaataaatgcctgttatgtaatataactttagattctaaattatattatgtttatttacaagcatttcttccattacatttaccta----acttatttttaatagtttacctagattacttatgaaaactgtgataatcaacatttaaaggtattttcctgttaatcatttatatagcctgtgaatttcaggtgtttacctaagtaagaagcttaaggttaaacaaatgagttttttgccaataactcaggataaatgacttatttatcaaaaaaaattacacaaggataattatcttttgagttacatttataattttataaccgtcatgccaaattttgacaccttatgta---ta---ttagcatttaatcaagctgacttttaaccactgagctttaaaaatcctttaaaatctcattgctgtaaccaagtacacccattttcctgagacatcaa-ttattattttt--tttctttccttttcttgttccttcagttccccactccctacttaggcttttaggaatgcaaatatagccttttacctccccattaccggactctccctacagtgcaagttcatctaactacacgctcaaactggaaagtcaacttgagaattaacagttgatttataaaccgatcatgcccactgtggaactctcactctttagggggttgtctcaagagataacagcctgcccatgaaggtgccagcagtcacaagctgattgcccagtagataaggcacaagagctagcatggaccccc-gccaccacccttgctcacttcctcccctgctttttaaaagtgaagccatatggaggacacctgcatttcttcccctaagctagttttggaaataaattactttctttataccagacttcacttttgttaattggactctgcaagcaacaagcgactaacctgcattttggttacattaccatgttttaggtgggacaaacttctaatatttcaaatgtaacacaaatatcaaaccagaaaagactttatttaggaaccaaacccaggctgccatggtggaaaaagggcagaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74489590 1668 + 122973662 atct--ttttctttttttttaagatttc---tttgttgttgctgttgttgttgctgctgttgtttccttgagacaaggtctctctctctctgtcacccagactggggtgtagtggcatgatcacagctcactgcagccttgacccacccaggctcaagcaatcctctcatttcaacctcccaggtagctgggactatagatgtgccccagcatgctcagttaattttctgtgttttttgtatatacagggttttaccatgttgcccaggctggtctggaactcccaggctcaagcaatctgctcacctcagccttacaaagtgctaggattatatgcatgagccatttgcacccagccattttattttagaacaaacatttaccatgcaagatttttttctcatataaaattttccttttaacctttcttaccaaaattatctctttatatttttaactttctttatatctctcttattttgtggttccttttatcttgtttcataacctttaaataacctttgaattcaacaaaaattattttcctttaaataagaacatattcttagcaaaatgtttttctataatttttttaattgtgaatgacccagacatttaataaacacctgttatgtaatataactttagattctaaattatattatgtttatttacaagcatttcttccattacatttacctaattgacttatttttaatagtttacctagattacttatgaaaactgtgatcatcatcatttaaaggtattttcctgttaatcatttatatagcctgtgaatttcaggtatttactttagtaagaagcttaaggttaaacaaatgagttttttgctaataactcaggataaatgacttatttatcaaaaaaaattacacaaggataattatcttttgagttacatttataattttataaccctcatgtcaaattttgacaccttatgtatggta---ttagcatttaatcaagctgacttttaaccactgagctttaaaagtcctttaaaatctcattgctgtaaccgagtacacccattttcctgagacatcaa-gtat--ttttt--ttcctctccttttcttgttccttcagttccccacttcctacttacgcttttaggaatgcaaatatagccttttacctccccattaccggactctccctacagtgcaagttcatctaactacacgctcaaactggaaagtcaacttgagaattaacagttgatttataaaccaatcatgcccactgtggaactctcactctttagggggttgtctcaagagataacagcctgcccatgaaggtgtcagcagtcacaagctgattgcccagtagataaggcacaagagctagcatggaccccc--ccaccacccttgctcacttcctcccccgctttttaaaagtgaagccatatggaggacacctgcatttcttcccctaagctagttttggaaataaattactttctttatcccagacttcacttttgttaattggactctgcaagcaacaagtgactaacctgcattttggttacattaccatgttttaggtgggacaaacttctaatatttcaaatgtaacacaaatatcaaaccagaaaagactttatttaggaaccaaacccaggctgccatggtggcaaaagggcagaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29962857 1669 + 172585720 atcttctttttcttttttttaagatttcttttttgttgttgttgttgttgttgctgttgttgtttccttgaaacaaggtctctctctc--tgtcacccaggctggggtgtagtggcatgatcacagctcactgcagccttgacccacccaggctcaagcaatcctcccattccaacctcccgggtagctgggactatagatgtgcaccagcatgctcagttaattttctgtgtattttgtatagagagggttttaccatgttgcccaggctggtctagaactcccaggctcaagcaatctgctcacctcagccttacaaagtgctaggattacatgcatgagccatttgcacccagccattttattttagaacaaacatttactatgcaagatttttttctcatataaaattttccttttaacctttcttaccaaaaatagttcttcagatttttaactttctttatgtctctcttatttagtggttccttttatcttgtttcataacctttaaataacctttgaattcaacaaaaattattttcctttaaataagaacatgttcttagcaaaatgtttttctataattttttaaattgtgaataacccagacatttaat----gcctgttacgtaatgtaactttagattctaaattatattatgtttatttacaagcatttcttctattacatttatctaattaacttatttttaatagtttacctagattacttatgaaaactgtaataatcatcatttaaaggtatttttctgttaatcatttatatagcctgtgaatttcaggtgtttacctaagtaagaagcttaaggttaaataaatgaattttttgccaataactcaggataaatgacttctttatcaaaaaaaattacacaaggataattatcttttgagttacatttataactttataaccctcatgccaaattttgacaccttataTA---Tgatattagcatttaatcaagctgacttttaaccactgtgttttaaaaatcctttaaaatctcattactgtaaccaagtacacccattttcctgagacatcaa-tttt--ttttt--tctccctccttttcttgttccttcagttccccacttcctacttaggcgtttaggaatacaaatatagccttttacctccccattaccggactctccctacagtgcaagttcatctaactacatgctcaaactggaaagtcaacttgagaattaacacttgatttataaaccaaacatgcccactatggaactctcactctttaggggattatctcaagagataacagcctgcccatgaaggtgccagcagtcacatgctgattgcccagtagataaggcacaagagctagcatggacccccggccaccacccttgctcacttccccccctgccttttaaaagtgaagtcatatggaggacacctgcatttcttcccctaagctagttttggaaataaattactttctttataacagacttcacttttgttaattggactctgcaagcaacaagcaactaacctgcattttggttacattaccatggtttagatgggacaaacttctaatatttcaaatgtaatacaaatatcaaaccagaaaggactttatttaggaaaccaacccaggctgccatggtggaaaaagggcagaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29626793 1669 - 170955103 atcttctttttcttttttttaagatttcttttttgttgttgttgttgttgttgctgttgttgtttccttgagacaaggtctctctctc--tgtcacccaggctggggtgtagtggcatgatcacagctcactgcagccttgacccacccaggctcaagcaatcctcccattccaacctcccgggtagctgggactatagatgtgcaccagcatgctcagttaattttctgtgtattttgtatagagagggttttaccatgttgcccaggctggtctagaactcccaggctcaagcaatctgctcacctcagccttacaaagtgctaggattacatgcatgagccatttgcacccagccattttattttagaacaaacatttactatgcaagatttttttctcatataaaattttccttttaacctttcttaccaaaaatagttcttcagatttttaactttctttatgtctctcttatttagtggttccttttatcttgtttcataacctttaaataacctttgaattcaacaaaaattattttcctttaaataagaacatgttcttagcaaaatgtttttctataattttttaaattgtgaataacccagacatttaat----gcctgttacgtaatgtaactttagattctaaattatattatgtttatttacaagcatttcttctattacatttatctaattaacttatttttaatagtttacctagattacttatgaaaactgtaataatcatcatttaaaggtatttttctgttaatcatttatatagcctgtgaatttcaggtgtttacctaagtaagaagcttaaggttaaataaatgaattttttgccaataactcaggataaatgacttatttatcaaaaaaaattacacaaggataattatcttttgagttacatttataactttataaccctcatgccaaattttgacaccttataTA---Tgatattagcatttaatcaagctgacttttaaccactgtgttttaaaaatcctttaaaatctcattactgtaaccaagtacacccattttcctgagacatcaa-tttt--ttttt--tctccctccttttcttgttccttcagttccccacttcctacttaggcgtttaggaatacaaatatagccttttacctccccattaccggactctccctacagtgcaagttcatctaactacatgctcaaactggaaagtcaacttgagaattaacagttgatttataaaccaaacatgcccactatggaactctcactctttaggggattatctcaagagataacagcctgcccatgaaggtgccagcagtcacatgctgattgcccagtagataaggcacaagagctagcatggacccccggccaccacccttgctcacttccccccctgccttttaaaagtgaagtcatatggaggacacctgcatttcttcccctaagctagttttggaaataaattactttctttataacagacttcacttttgttaattggactctgcaagcaacaagcaactaacctgcattttggttacattaccatggtttagatgggacaaacttctaatatttcaaatgtaatacaaatatcaaaccagaaaggactttatttaggaaaccaacccaggctgccatggtggaaaaagggcagaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2670229 1665 -   2996164 atcttctttttcttttttttaagatttcttttttgttgttgttgttgttgttgctgttgttgtttccttgagacaaggtctctctctc--tgtcacccagtctggggtgtagtggcatgatcacagctcactgcagccttgacccacccaggctcaagcaatcctcccattccaacctcccgggtagctgggactatagatgtgcaccagcatgctcagttaattttctgtgtattttgtatagagagggttttaccatgttgcccaggctggtctagaactcccaggctcaagcaatctgctcacctcagccttacaaagtgctaggattacatgcatgagccatttgcacccagccattttattttagaacaaacatttactatgcaagatttttttctcatataaaattttccttttaacctttcttaccaaaaatagttcttcagatttttaactttctttatgtctctcttatttagtggttccttttatcttgtttcataacctt----taacctttgaattcaacaaaaattattttcctttaaataagaacatgttcttagcaaaatgttttcctataattttttaaattgtgaataacccagacatttaat----gcctgttacgtaatgtaactttagattctaaattatattatgtttatttacaagcatttcttctattacatttatctaattaacttatttttaatagtttacctagattacttatgaaaactgtaataatcatcatttaaaggtatttttctgttaatcatttatatagcctgtgaatttcaggtgtttacctaagtaagaagcttaaggttaaataaatgaattttttgccaataactcaggataaatgacttatttatcaaaaaaaattacacaaggataattatcttttgagttacatttataactttataaccctcatgccaaattttgacaccttataTA---Tgatattagcatttaatcaagctgacttttaaccactgtgttttaaaaatcctttaaaatctcattactgtaaccaagtacacccattttcctgagacatcaa-tttt--ttttt--tctccctccttttcttgttccttcagttccccacttcctacttaggcttttaggaatacaaatatagccttttacctccccattaccggactctccctacagtgcaagttcatctaactacatgctcaaactggaaagtcaacttgagaattaacagttgatttataaaccaaacatgcccactatggaactctcactctttaggggattatctcaagagataacagcctgcccatgaaggtgccagcagtcacatgctgattgcccagtagataaggcacaagagctagcatggacccccggccaccacccttgctcacttccccccctgccttttaaaagtgaagtcatatggaggacacctgcatttcttcccctaagctagttttggaaataaattactttctttataacagacttcacttttgttaattggactctgcaagcaacaagcaactaacctgcattttggttacattaccatggtttagatgggacaaacttctaatatttcaaatgtaatacaaatatcaaaccagaaaggactttatttaggaaaccaacccaggctgccgtggtggaaaaagggcagaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     422295 1660 +    766320 atcttctttttcttttttttaagatttc---tttgttgttgttgttgttgctgctgttgttgtttccttgagacaaggtctctctctc--tgtcacccaggctggggtgtagtggcatgatcacagctcactgcagccttgacccacccaggctcaagcaatcctcccatttcaaccacccgggtagctgggactatagatgtgcaccagcatgctcagttaattttctgtgtattttgtatagacagggttttaccatgttgcccaggctggtctggaactcccaggctcaagcaatctgctcacctcagccttacaaagtgctgagattacatgtatgagccatttgcacccagccattttattttagaacaaacatttaccatgcaagatttttttctcatataaaattttccttttaacctttcttaccaaaaatatttcttcagatttttaactttctttatatctctcttatttagtggtcccttttatcttgtttcataacctttaaataacctttgaattcaacaaaaattattttcctttaaataagaacatgttcttagcaaaatgtttttctgtaattttt--aattgtgaatgacccagacatttaat----gcctgttatgtaatgtaactttagattctaaattatattatgtttatttacaagcctttcttccattacatttacctaattaacttatttttaatagtttacctaggttacttatgaaaactgtaataatcataatttaaaggtatttttctgttaatcatttatatagcctgtgaatttcaggtgtttacctaagtaagaagcttaaggttaaataaatgaa--tgttgccaataactcaggataaatgacttatttatcaaaaaaaattacacaaggataattatcttttgagttacgtttataactttataaccctcatgccaaattttgacaccatatata---tt---ttAACAtttaatcaagctgacttttaaccactgagtttttaaaatcttttaaaatctcattactgtaaccgagtacacccattttcctgagacatcgattttt--ttttt--tctctcttcttttcttgttccttcagttccccacttcctacttaggcttttaggaatacaaatatagccttttatctccccattaccagactctccctacagtgcaagttcatctaactacatgctcaaactggaaagtcaacttgagaattaacagttgatttataaaccaaacatgcccactgtggaactctcactctttagggggttatctcaagagataacagcctgcccatgaaggtgccagcagtcacatgctgattgcccagtagataacgcacaagagctagcatggacccccggccaccacccttgctcacttcctcccctgccttttaaaagtgaagtcatatggaggacacctgcatttcttcccctaagctagttttggaaataaattactttctttataacagacttcacttttgttaattggactctgcaagcaacaagcaactaacctgcattttggttacattaccatggtttaggtgggacaaacttctaatatatcaaatgtaatacaaatatcaaaccagaaaggactttatttaggaaaccaacccaggctgccatggtggaaaaagggcagaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28880458 1656 -  71996105 atcttCTTTTTCTTTTTTTAAAGATTTC---Tttgttgttgttgttgttgctgc---tattgtttccttgagatgaggtctctctctc--tgtcacccaggctggggtgtagtggcatgatcacagctcactgcagccttgacccacccaggctcaagcaatcctcccatttcaacctcccgggtagctgggactatagatgtgcaccagcatgctcagttaattttctgtgtattttgtatagacagggttttaccatgttgcccaggctggtctagaactcccaggctcaagcaatctgctcacctcagccttacaaagtgctaggattacatgcatgagccatttgcacccagccactttattttagagcaaacatctaccatgcaagatttttttctcatataaaattttccttttaacctttcttaccaaaaatatttcttcagatttttaactctctttatgtctctcttatttagtggttccttttatcttgtttcataaactttaaataacctttgaattcaacaaaaattattttcctttaaataagaacatgttcttagcaaaatgtttttctataatttttttaattgtgaataacccagatatttaat----gcctgttgtgtaatgtaactttagattctaaattatattatgtttatttacaagcatttcttccattacatttacctaattaacttatttttaatagtttacctagattacttatgaaaactgtaataatcatcatttaaaggta---ttctgttaatcatttatatagcctgtgaatttcaggtgtttacctaagtaagaagcttaaggttaaat-aatgaa--tgttgccaataactcaggataaatgacttatttatcaaaaaaaattacacaaggataattatcttttgagttacgtttataactttataaccctcatgccaaattttgacaccatatata---ta---ttaacatttaatcaagctgacttttaaccactgagttttaaaaatcttttaaaatctcattactgtaaccgagtacacccattttcctgagacatcaa-tttt--ttttttctctctctccttttcttgttccttcagttccccacttcctacttaggcttttaggaatacaaatatagccttttacctccccattaccagactctccctacagtgcaagttcatctaactacatgctcaaactggaaagtcaacttgagaattaacagttgatttataaaccaaacatgcccactgtggaactctcactctttagggggttatctcaagagataacagcctgcccatgaaggtgccagcagtcacatgctgattgcccagtagataaagcacaagagctagcatggacccccggccaccacccttgctcccttcctcccctgccttttaaaagtgaagccatatggaggacacctgcatttcttcccctaagctagttttggaaataaattactttctttataacagacttcacttttgttaattggactctgcaagcaacaagcaactaacctgcattttggttacattaccatggtttaggtgggacaaacttctaatatatcaaatgtaatacaaatatcaaaccagaaaggactttatttaggaaaccaacccaggctgccatggtggaaaaagggcagaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      56453 1659 +    290775 atcttctttttcttttttttaagatttc---tttgttgttgttgttgttgctgctgttgttgtttccttgagacaaggtctctctctc--tgtcacccaggctgggatgtagtggcatgatcacagctcactacagccttgacccacccaggctcaagcaatcctcccatttcaacctcccgggtagctgggactatagatgtgcaccagcatgctcagttaattttctgtgtattttgtatagacagggttttaccatgttgcccaggctggtctggaactcccaggctcaagcaatctgctcacctcagccttacaaagtgctaagattacatgtatgagccatttgcacccagccattttattttagaacaaacatttaccatgcaagatttttttctcatataaaattttccttttaacctttcttaccaaaaatatttcttcagatttttaactttctttatatctctcttatttagtggtcccttttatcttgtttcataacctttaaataacctttgaattcaacaaaaattattttcctttaaataagaacatgttcttagcaaaatgtttttctgtaa--tttttaattgtgaatgacccagacatttaat----gcctgttatgtaatgtaactttagattctaaattatattatgtttatttacaagcctttcttccattacatttacctaattaacttatttttaatagtttacctaggttacttatgaaaactgtaataatcataatttaaaggtatttttctgttaatcatttatatagcctgtgaatttcaggtgtttacctaagtaagaagcttaaggttaaataaatgaa--tgttgccaataactcaggataaatgacttatttatcaaaaaaaattacacaaggataattatcttttgagttacgtttataactttataaccctcatgccaaattttgacaccatatata---tt---ttAACAtttaatcaagctgacttttaaccactgagtttttaaaatcttttaaaatctcattactgtaaccgagtacacccattttcctgagacatcaa-ttct--ttttt--tctctcttcttttcttgttccttcagttccccacttcctacttaggcttttaggaatacaaatatagccttttatctccccattaccagactctccctacagtgcaagttcatctaactacatgctcaaactggaaagtcaacttgagaattaacagttgatttataaaccaaacatgcccactgtggaactctcactctttagggggttatctcaagagataacagcctgcccatgaaggtgccagcagtcacatgctgattgcccagtagataacgcacaagagctagcatggacccccggccaccacccttgctcacttcctcccctgccttttaaaagtgaagtcatatggaggacacctgcatttcttcccctaagctagttttggaaataaattactttctttataacagacttcacttttgttaattggactctgcaagcaacaagcaactaacctgcattttggttacattaccatggtttaggtgggacaaacttctaatatatcaaatgtaatacaaatatcaaaccagaaaggactttatttaggaaaccaacccaggctgccatggtggaaaaagggcagaa
i manLeu1.NW_012099233v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964    0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e colAng1.NW_012115566v1    2486516 3146 -   3067355 I
e panPan2.chr6             29988201   45 + 173848474 I
e panTro5.chr6             29753577   45 + 175400573 I

a score=3849512.000000
s hg38.chr6_GL000254v2_alt   790494 808 +   4827813 ccttagctactgaactacagcatggggcaaccactattgctatttcagtttggcttggctagcaaagggttgttttgttatgtaaataaagcccttcaggtaattgaaatctttcttgcttcgatggctgatttttctttttttt-----ctctttgtttttccagcttcaggaatttagccagttcagaggtcttgttccccataatttagaactttccttcaggtttgaccaagtcaactagagtggtcaaacccaatgg-aaaaaagactaaaacaacaaaaacagaaccaaacaaataaacaa-caacaaaaaagtaaagcaaaacaaatgattgcacaatttataagattactgagcactctaatggtaaggaggaatcaagaccagctggtagttaatcttaactttcag---------agaatttccaagacaaaccccatttcagctacttatgtaggaataaggcccaggttgaagattgctctctatcatcctagaagcaggaaaaaaactcaaaactcatcttccctgttggaagcaagctgaaactctggaaaggagttgcctgctttccattatcatggattcagaaaaactcatcttt----ttggatgcaagtaaaactctagaaaaggagttgaacagcaaaataaaccttagatctcaacaacattttgagaaatcagggattctctggagatgatacctcccaggcctcagcaaatcgtcctgttggtttTgttactggcagcaaatccatatgggtctgcagcaatctcaattcttgccttctcagaagaaagaattcgactgaggggc
s panTro5.chr6             29753622 814 + 175400573 ccttagctactgaactacagcatggggcaaccactattgctatttcagtttggcttggctagcaaagggttgttttgttatgtaaataaagcccttcaggtaacTGAAATCTTTCTTGTTTCGATGGCTGATttttctttttttt-----ctctttgtttttccagcttcaggaatttagccagttcagaggtcttgttccccataatttagaactttccttcaggtttgaccaagtcaactagagtggtcaaacccaatgg-aaaaaagactaaaacaacaaaaacagaaccaaacaaataaacaa-caacaaaaaagtaaagcaaaacaaatgattgcacaatttataagattactgagcactctaatggtaaggaggaatcaagaccagctggtagttaatcttaactttcagtcattaaggagaatttccaagacaaaccccatttcagctacttatgtaggaatacggcccaggttgaagattgctctctatcatcctagaagcaggaaaaaaactcaaaactcatcttccttgttggaagcaagctgaaactctggaaaggagttgcctgctttccattatcatggattcagaaaaactcatcttt----ttggatgcaagtaaaactctagaaaaggagttgaacagcaaaataaaccttagatctcaaca---ttttgagaaatcagggattctctggagatggtacctcccaggcctcagcaaatcgtcctgttggtttTgttactggcagcaaatccatatgggtctgcagcaatctcaattcttgccttctcagaagaaagaattcgactgaggggc
i panTro5.chr6             I 45 C 0
s panPan2.chr6             29988246 814 + 173848474 ccttagctactgaactacagcatggggcaaccactattgctatttcagtttggcttggctagcaaagggttgttttgttatgtaaataaagcccttcaggtaATTGAAATCTTTCTTGTTTCGATGGCTGATttttctttttttt-----ctctttgtttttccagcttcaggaatttagccagttcagaggtcttgttccccataatttagaactttccttcaggtttgaccaagtcaactagagtggtcaaacccaatgg-aaaaaagactaaaacaacaaaaacagaaccaaacaaataaacaa-caacaaaaaagtaaagcaaaacaaatgattgcacaatttataagattactgagcactctaatggtaaggaggaatcaagaccagctggtagttaatcttaactttcagtcattaaggagaatttccaagacaaaccccatttcagctacttatgtaggaatacggcccaggttgaagattgctctctatcatcctagaagcaggaaaaaaactcaaaactcatcttccctgttggaagcaagctgaaactctggaaaggagttgcctgctttccattatcatggattcagaaaaactcatcttt----ttggatgcaagtaaaactctagaaaaggagttgaacagcaaaataaaccttagatctcaaca---ttttgagaaatcagggattctctggagatggtacctcccaggcctcagcaaatcgtcctgttggtttTgttactggcagcaaatccatatgggtctgcagcaatctcaattcttgccttctcagaagaaagaattcgactgaggggc
i panPan2.chr6             I 45 C 0
s gorGor5.CYUI01015250v1    5791708 814 +   6154872 ccttagctactgaactacagcatggggcaaccactattgctatttcagtttggcttggctagcaaagggttgttttgttatgtaaataaagcccttcaggtaattgaaatctttcttgtttcgatggctgatttttctttttttt-----ctctttgtttttccagcttcaggaatttagccagttcagaggtcttgttccccataatttagaactttccttcaggtttgaccaagtcaactagagtggtcaaacccaatgg-aaaaaagactaaaacaacaaaaacagaaccaaacaaataaacaa-caacaaaaaagtaaagcaaaacaaatgattgcacaatttataagattactgagcactctaatggtaaggagaaatcaagaccagcttgtagttaatcttaactttcagtcattaaggagaatttccacgacaaaccccatttcagctacttatgtaggaataaggcccaggttgaagattgctctctatcatcctagaagcaggaaaaaaactcaaaactcatcttccctgttggaagcaagctgaaactccggaaaggagttgcctgctttccattatcatggattcagaaaaactcatcttt----ttggatgcaagcaaaactctagaaaaggagttgaacagcaaaataaaccttagatctcaaca---ttttgagaaatcagggattctctggagatggtacctcccaggcctcagcaaatcgtcctgttggtttTgttactggcagcaaatccatatgggtctgcagcaatctcaattcttgccttctcagaagaaagaattcgactgaggggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74491258 810 + 122973662 tcttagctactgaactacagcatggggcaaccactattgctctttcagtttggcttggctagcaaagggttgttttgttatgtaaataaagcccttcaggtaattgaaatctttcttgtttcgatggctgatttttctttttttt------tttttctttttccagcttcaggaatttagccagttcagaggtcttgttccccataatttagaactttccttcaggtttgaccaagtcaactagagtggtcaaacccaatgg-aaaaaagactaaaacaacaaaaacagaaccaaac----aaacaa-caa-aaaaaagtaaagcaaaacaaatgattgcacaatttataagattactgagcactctaatggtaaggagaaatcaagaccagctggtagttaatcttaacttttagttattaaggagaatttccaagacaaaccccatttcagctacttatgtaggaataaggcccaggttgaagactgctctctatcatcctagaagcagg-aaaaaactcaaaactcatcttccctgtttgaagcaaggtgaaactccagaaaggagttgcctgctttccattatcat-gattcagaaaaactcatcttt---gttggatgcaagtaaaactccagaaaaggagttgaacagcaaaataaaccttagatctcaacagcattttgagaaatcagggattctctggagatggtacctcctaggcctcagcaaattgtcctattggtttTgttactggcagcaaatccatacgggtttgcagcaatctcagtgcttgccttctcagaagaaagaattcgactgaggggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29964526 825 + 172585720 ccttagctactgaactacagcatggggcaaccactactgctctttcagtttggcttggctagcaaagggttgttttgctatgtaaataaagcccttcaggtaattgaatactttcttgttttgatggctgatttttctttctttc-tttttttttttttcccccaacttcaggaatttagccaattcagaggtctttttccccataatttagaactttccttcagatttgaccaagtcaagtaaagtggtcaaacccaatggcaaaaaagactaaaacaacaaaaacagaaccaaacaaataaacaa-gaa-aaaaaagttaagcaaaacaaatgattgcacaatttgtaagactactgagcactctaatggtaaggagaaatcaagaccagctggtagttaattttaacttttagtcattaaggagaatttccaagacaaaccccatttcagctacttatgtaggaacacagcccaggtcaaagactgctctctgtcatcctagaagcagaaaaaaaactcaaaactcattttccctgttggaagcaagctgaaactccagaaaggagttgcctgctttccattatcatggatccagaaaaactcatcttctttgttggatgcaagtaaaactccggaaaaggagttatacagcaaaataaaccttcgatctcaacattattttgagaaatcagggattctgtggagatggtacctcccaggcctcagcaaattgtcctattggtttTgttactggcagcaaatccctacaggtctgcagcagtctcaattcttgccttctcagaagaatgaattcgactgaggggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29628462 825 - 170955103 ccttagctactgaactacagcatggggcaaccactactgctctttcagtttggcttggctagcaaagggttgttttgctatgtaaataaagcccttcaggtaATTGAATACTTTCTTGTTTTGATGgctgatttttctttctttctttttttttttttttccccaacttcaggaatttagccaattcagaggtctttttccccataatttagaactttccttcagatttgaccaagtcaagtaaagtggtcaaacccaatgg-aaaaaagactaaaacaacaaaaacagaaccaaacaaataaacaa-gaa-aaaaaagttaagcaaaacaaatgattgcacaatttgtaagactactgagcactctaatggtaaggagaaatcaagaccagctggtagttaattttaacttttagtcattaaggagaatttccaagacaaaccccatttcagctacttatgtaggaacacggcccaggtcaaagactgctctctgtcatcctagaagcaggaaaaaaactcaaaactcagcttccctgttggaagcaagctgaaactccagaaaggagttgcctgctttccattatcatggatccagaaaaactcatcttctttgttggatgcaagtaaaactccggaaaaggagttatacagcaaaataaaccttcgatctcaacattattttgagaaatcagggattctgtggagatggtacctcccaggcctcagcaaattgtcctattggtttTgttactggcagcaaatccctacaggtctgcagcagtctcaattcttgccttctcagaagaatgaattcgactgaggggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2671894 821 -   2996164 ccttagctactgaactacagcatggggcaaccactactgctctttcagtttggcttggctagcaaagggttgttttgctatgtaaataaagcccttcaggtaattgaatactttcttgttttgatggctgatttttctttctttc----tttttttttttccccaacttcaggaatttagccaattcagaggtctttttctccataatttagaactttccttcagatttgaccaagtcaagtagagtggtcaaacccaatgg-aaaaaagactaaaacaacaaaaacagaaccaaacaaataaacaa-gaa-aaaaaagttaagcaaaacaaatgattgcacaatttgtaagactactgagcactctaatggtaaggagaaatcaagaccagctggtagttaattttaacttttagtcattaaggagaatttccaagacaaaccccatttcagctacttatgtaggaacacggcccaggtcaaagactgctctctgtcatcctagaagcaggaaaaaaactcaaaactcagcttccctgttggaagcaagctgaaactccagaaaggagttgcctgctttccattatcatggatccagaaaaactcatcttctttgttggatgcaagtaaaactccggaaaaggagttacacagcaaaataaaccttcgatctcaacattattttgagaaatcagggattctgtggagatggtacctcccaggcctcagcaaattgtcctattggtttTgttactggcagcaaatccctacaggtctgcagcagtctcaattcttgccttctcagaagaatgaattcgactgaggggc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     423955 818 +    766320 ccttagctactgaactacagcatggggcaaccactactgctctttcagtttggcttggctagcaaagggttgttttgctatgtaaataaagcccttcaggtaattgaatactttcttgttttgatggctgatttttctttctttt-------ttttttttccccaacttcaggaatttagccaattcagaggtctttttccccataattgagaactttccttcagatttgaccaagtcaagtagagtggtcaaacccaatgg-aaaaaagactaaaacaacaaaaacagaaccaaacaaataaacaa-gaa-aaaaaagttaagcaaaacaaatgattgcacaatttgtaagactactgagcactctaatggtaaggagaaatcaagaccagctggtagttaattttaacttttagtcattaaggagaatttccaagacaaaccccatttcagctacttacgtaggaatacgacccaggtcaaagactgctctctatcatcctagaagcaggaaaaaaactcaaaactcatcttccctgttggaagcaagctgaaactccagaaaggcgatgcctgctttccattatcatggatccagaaaaactcatcttctttgttggatgcaagtaaaactccggaaaaggagttatacagcaaaataaaccttagatctcaacattattttgagaaatcagggattctgtggagatggtacctcccaggcctcagcaaattgtcctattggtttTgttactggcagcaaatccctacaggtctgcagcagtctcaattcttgccttctcagaagaaagaattcgactgaggggc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28882114 824 -  71996105 ccttagctactgaactacagcatggggcaaccactactgctctttcagtttggcttggctagcaaagggttgttttgctatgtaaataaagcccttcaggtaATTGAATACTTTCTTGTTTTGATGGCTGATTtttctttctttc--tttttttttttttccccaactccaggaatttagccaattcagaggtctttttccccataatttagaactttccttcagatttgaccaagtcaagtagagtggtcaaacccaatgg-aaaaaagactaaaacaacaaaaacagaaccaaacaaataaataacaaa-aaaaaagttaagcaaaacaaatgattgcacaatttgtaaggttactgagcactctaatggtaaggagaaatcaagaccagctggtagttaattttaacttttagtcattaaggagaatttccaagacaaaccccatttcagctacttatgtaggattacggcccaggtcaaagactgctctctgtcatcctagaagcaggaaaaaaactcaaaactcatcttccctgttggaagcaagctgaaactccagaaaggagttgcctgctttccattatcatggatccagaaaaactcatcttctttgttggatgcaagtaaaactccggaaaaggagttatacagcaaaataaaccttcgatctcaacattattttgagaaatcagggattctgtggagatggtacctcccaggcctcagcaaattgtcctattggtttTgttactggcagcaaatccctacaggtctgcagcagtctcaattcttgccttctcagaagaaagaattcgactgaggggc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      58112 819 +    290775 ccttagctactgaactacagcatggggcaaccactactgctctttcagtttggcttggctagcaaagggttgttttgctatgtaaataaagcccttcaggtaattgaatactttcttgttttgatggctgatt----tttctttt--tttttttttttttccccaacttcaggaatttagccaattcagaggtctttttcctcataattcagaactttccttcagatttgaccaagtcaagtagagtggtcaaacccaatgg-aaaaaagactaaaacaacaaaaacagaaccaaacaaataaacaa-gaa-aaaaaagttaagcaaaacaaatgattgcacaatttgtaagactactgagcactctaatggtaaggagaaatcaagaccagctggtagtttattttaacttttagtcattaaggagaatttccaagacaaaccccatttcagctacttatgtaggaatacgacccaggtcaaagactgctctctatcatcctagaagcaggaaaaaaactcaaaactcatcttccctgttggaagcaagctgaaactccagaaaggagttgcctgctttccattatcatggatccagaaaaactcatcttctttgttggatgcaagtaaaactccggaaaaggacttatacagcaaaataaaccttagatctcaacattattttgagaaatcagggattctgtggagatggtacctcccaggcctcagcaaattgtcctattggtttTgttactggcagcaaatccctacaggtctgcagcagtctcaattcttgccttctcagaagaaagaattcgactgaggggc
i manLeu1.NW_012099233v1   C 0 I 1153
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964   0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e colAng1.NW_012115566v1    2486516 3146 -   3067355 I

a score=3386447.000000
s hg38.chr6_GL000254v2_alt   791302 877 +   4827813 atacggcagagtgaaagattgaggcaagttttagagccaagagtgaaaatttattaaaaagctttagagcagaaactgaagaaagtaaagtccacttgaaagagggccgagtgggtgacttgagagatcaagttcatggtttgatctttgacttggggtttcatacattggcatgcctcttggggcg-ggggagtg--gtttgcatctcttctcccttgatttttcccttggggtgggctgtccacgtgcacagtggcctgccagcacttggaaggggcaacatacacaatgtgtttaccaaaattgtacacatgctcacttaaggcattcttcccttaccagccgagtgttcctggagaaaggttatatactggttcaactctgccattttgcctgttagtgcacatgctta----agtccactagcccacctcctgagatcttattgggaagctgctgattaccaacttgaggtgtttctattgggaggctgcctttccctggcaccggctgcagccaattattattttcaagaggcagtttaacaacctcctgaccaccatctgatggttgcctgacattcctgggcgagggtccctctcctgacctattcatgtctgactaattacctattgtaacaGTTTGAACAATAAAGATAGCTCAAggccagacatggtggttcatgcctgtaatccccgctctttgggaggccttgcaaggccagaggatttcttgagcccaggagttcaagaccagcctgggcaacaaggcaaaaccctgtctctatgaaaattacaaaaattagcccggtgtggtggcacaagcctgtagtcccagctactcaggaggctgaggtggaaggatcacctgagcccgggaggtg
s panTro5.chr6             29754436 873 + 175400573 atacggcagagtgaaagattgaggcaagttttagagccaagagtgaaaatttattaaaaagctttagagcaggaactgaagaaa----agtccacttgaaagagggccgagtgggtgacttgagagatcaagttcatggtttgatctttgacttggggtttcatacattggcatgcctcttggggcg-ggggagtg--gtttgcatctcttctcccttgatttttcccttggggtgggctgtccacgtgcacagtggcctgccagcacttggaaggggcaacatacacattgtgtttaccaaaattgtacacatgctcacttaaggcattcttcccttaccagccgagtgttcctggagaaaggttatatactggttcaactctgccattttgcctgttagtgcacatgctta----agtccactagcccacctcctgagatcttattgggaagctgctgattaccaacttgaggtgtttctattgggaggccgcctttccctggcaccggctgcagccaattattattttcaagaggcagtttaacaacctcctgaccaccatctgatggttgcctgacattcctgggcgagggtccctctcctgacctattcatgtctgactaattacctattgtaacagtttgaacaataaagatagctcaaggccagacatggtggttcatgcctgtaatccccgctctttgggaggccttgcaaggccagaggatttcttgagcccaggagttcaagaccagcctgggcaacaaggcaaaaccctgtctctatgaaaattacaaaaattagcccggtgtggtggcacaggcctgtagtcccagctactcaggaggctgaggtggaaggatcacctgagcccgggaggtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29989060 873 + 173848474 atacggcagagtgaaagattgaggcaagttttagagccaagagtgaaaatttattaaaaagctttagagcaggaactgaagaaa----agtccacttgaaagagggccgagtgggtgacttgagagatcaagttcatggtttgatctttgacttggggtttcatacattggcatgcctcttggggag-ggggagtg--gtttgcatctcttctcccttgatttttcccttggggtgggctgtccacgtgcacagtggcctgccagcacttggaaggggcaacatacacattgtgtttaccaaaattgtacacatgctcacttaaggcattcttcccttaccagccgagtgttcctggagaaaggttatatactggttcaactctgccattttgcctgttagtgcacatgctta----agtccactagcccacctcctgagatcttattgggaagctgctgattaccaacttgaggtgtttctattgggaggctgcctttccctggcaccggctgcagccaattattattttcaagaggcagtttaacaacctcctgaccaccatctgatggttgcctgacattcctgggcgagggtccctctcctgacctattcatgtctgactaattacctattgtaacaGTTTGAACAATAAAGATAGCTCAAggccagacatggtggttcatgcctgtaatccccgctctttgggaggccttgcaaggccagaggatttcttgagcccaggagttcaagaccagcctgggcaacaaggcaaaaccctgtctctatgaaaattacaaaaattagcccggtgtggtggcacaggcctgtagtcccagctactcgggaggctgaggtggaaggatcacctgagcccgggaggtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5792522 862 +   6154872 atacggcagagtgaaagattgaagcaagttttagagccaagagtgaaaatttattaaaaagctttagagcaggaactgaagaaagtaaagtccacttgaaagagggccgagtgggtgacttgagagatcaagttcatggtttgatctttgacttggggtttcatacattggcatgcctcttggggcc-ggggagtg--gtttgcatctcttctcccttgatttttcccttggggtgggctgtccacgtgcacagtggcctgccagcacttggaaggggcaacatacacattgtgtttaccaaaattgtacacatgctcacttaaggcattcttcccttaccagccgagtgttcctggagaaaggttatatactggttcaactctgccattttgcctgttggtgcacatgctta----agtccactagcccaactcctgagatcttattgggaagctgctgattaccaacttgaggtgtttctattgggaggctgcctttccctggcaccagctgcagccaattatt---------------tttaacaacctcctgaccaccatctgatggttgcctgacattcctgggcaagggtccctctcctgacctattcatgtctgactaattacctattgtaacaGTTTGAACAATAAAGATAGCTCAAggccagacatggtggttcatgcctgtaatccccgctctttgggaggccttgcaaggccagaggatttcttgagcccaggagttcaagaccagcctgggcaacaaggcaaaaccctgtctctatgaaaattacaaaaattagcccggtgtggtggcacaagcctgtagtcccagctactcgggaggctgaggtggaaggatcacctgagcccgggaggtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74492068 875 + 122973662 ataaggcagagtgaaagattgaggcaagttttagagccaagagtgaaagtttattaaaaagctttagagcaggaactaaagtaa----agtccacttgaaagagggccgagtgggtgacttgagagatcgagttaatggcttgatctttgacttggggtttcatacattggcatgcctctcggggggcggggggtggagtttgcatcccttctcccttgattcttcccttggggtgggctgtccacgtgcacagtggcctgccagcacttggaaggggcaacatacacattgtgtttaccaaaattgtaca-atgctcacttaaggcattcttcccttaccagccgagtgtttctggagaaaggttatatactggttcaactctgccattttgcctgttagtgcacatgctta----aacccattagcccaactcctgagatcttattgggaagctgctgattaccaacttgaggtgtttctattgcgaggctgccgttccctggcaccagctgcaaccaattattattttcaacaggcagtttaacaacctcctgaccatcatctgatggttgcctgacattcctgggcgagggtccctctcctgccctgttcatgtctgattaattacctactgtaacagtttgagcaataaagatagctcaaggccagacatggtggttcatgcctgtaatccccgcactttgggaggccttgcaagcccagaggattgcttgagcccaggagttcaagaccagcctgggcaacaaggcaaaaccctgtctctatgaaaattacaaaaattagccaggtgtggtggcataagcctgtagtcccagctactcaggaggctgaggtggaaggatcacctgagcccgggaggtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29965351 871 + 172585720 gtagggcagagtgaaagattgaggcaagttttagagccaacagtgaaagtttattaaaaagctttagagcaggaactgaagaaagcaaagtccgcttgaaagaggg-cgagtgggtgactggagagatcaggttcatggtttgatctttgacttggg--tttagacattggcatgcctcttggagcg-ggggg-----ttttgcatcccttctcccttgattcttcccttggggtgggttgtccacgtgcacggtggcctgccagcacttggaaggggcaacatgcacattgtatttaccaaatttgtacacatgctcacttaaggcattcttcccttaccagccgagtgtttctggagaaaggttatatactggttcaactctgccattttgcctgttagtgcacatgctta----cgtccactagcccagctcctgagatcttattgggaagctgctgatgaccaacttgaggtgtttctgttgggaggctgcctttccctggcaccagctgcaaccaattatttttttcaagaggcagtttaacaacctcgtgaccgtcatctgatggttgcctgacagtcctggtccaggtcccctctcctgccctgttcatgtctgactaattacctattgtaacaGTCTGAACAATAAAGATAGCTCAAggccagacatggtggttcacgcctgtaatccctgcactttgggaggccttgcaaggcaagagtattgcttgagcccaggagttcaagaccagcctgggcaacaaggcaaaaccctgtctctatgaaaattacaaaaattagccaagtgtggtggcacaagcctgtagtcccagctgctcaggaagctgaggtggaaggatcacctgagcccgggatgtg
i rheMac8.chr4             C 0 I 425
s macFas5.chr4             29629287 871 - 170955103 gtagggcagagtgaaagattgaggcaagttttagagccaacagtgaaagtttattaaaaagctttagagcaggaactgaagaaagcaaagtccgcttgaaagaggg-cgagtgggtgactggagagatcaggttcatggtttgatctttgacttggg--tttagacattggcatgcctcttggagcg-ggggg-----ttttgcatcccttctcccttgattcttcccttggggtgggttgtccacgtgcacggtggcctgccagcacttggaaggggcaacatgcacattgtatttaccaaatttgtacacatgctcacttaaggcattcttcccttaccagccgagtgtttctggagaaaggttatatactggttcaactctgccattttgcctgttagtgcacatgctta----cgtccactagcccagctcctgagatcttattgggaagctgctgatgaccaacttgaggtgtttctgttgggaggctgcctttccctggcaccagctgcaaccaattatttttttcaagaggcagtttaacaacctcgtgaccgtcatctgatggttgcctgacagtcctggtccaggtcccctctcctgccctgttcatgtctgactaattacctattgtaacaGTCTGAACAATAAAGATAGCTCAAggccagacatggtggttcacgcctgtaatccctgcactttgggaggccttgcaaggcaagagtattgcttgagcccaggagttcaagaccagcctgggcaacaaggcaaaaccctgtctctatgaaaattacaaaaattagccaagtgtggtggcacaagcctgtagtcccagctgctcaggaagctgaggtggaaggatcacctgagcccgggatgtg
i macFas5.chr4             C 0 I 425
s macNem1.NW_012011356v1    2672715 871 -   2996164 gtagggcagagtgaaagattgaggcaagttttagagccaacagtgaaagtttattaaaaagctttagagcaggaactgaagaaagcaaagtcggcttgaaagaggg-cgagtgggtgactggagagatcaggttcatggtttgatctttgacttggg--tttagacattggcatgcctcttggagcg-ggggg-----ttttgcatcccttctcccttgattcttcccttggggtgggttgtccacgtgcacagtggcctgccagcacttggaaggggcaacatgcacattgtatttaccaaatttgtacacatgctcacttaaggcattcttcccttaccagccgagtgtttctggagaaaggttatatactggttcaactctgccatttttcctgttagtgcacatgctta----cgtccactagcccagctcctgagatcttattgggaagctgctgatgaccaacttgaggtgtttctgttgggaggctgcctttccctggcaccagctgcaaccaattatttttttcaagaggcagtttaacaacctcatgaccgtcatctgatggttgcctgacagtcctggtccaggtcccctctcctgccctgttcatgtctgactaattacctattgtaacaGTCTGAACAATAAAGATAGCTCAAggccagacatggtggttcatgcctgtaatccctgcactttgggaggccttgcaaggcaagagtattgcttgagcccaggagttcaagaccagcctgggcaacaaggcaaaaccctgtctctatgaaaattacaaaaattagccaagtgtggtggcacaagcctgtagtcccagctgctcaggaagctgaggtggaaggatcacctgagcccgggatgtg
i macNem1.NW_012011356v1   C 0 I 425
s cerAty1.NW_012002711v1     424773 872 +    766320 gtagggcagagtgaaagattgaggcaagttttagagccaacagtgaatgtttattaaaaagctttagagcaggaactgaagaaagcaaagtccgcttgaaagaggg-cgagtgggtgactggagagatcaggttcatggtttgatctttgacttggg--tttagacattggcatgcctcttggagcg-ggggg--t--ttttgcatcccttctcccttgattcttcccttggggtgggttgtccacgtgcacggtggcctgccagcacttggaaggggcaacatgcacattgtatttaccaaaattgtacacatgctcacttaaggcattcttcccttaccagccgagtgtttctggagaaaggttatatactggttcaactctgccattttgcctgttagtgcacatgctta----cgtccactagcccagctcctgagatcttattgggaagctgctgatgaccaacttgaggtgtttctgttgggaggctgcctttccctggcaccagctgcaaccaattatttttttcaagaggcagtttaacaacctcgtgaccatcatctgatggttgcctgacagtcctggtccaggtcccctctcctgccctgttcatgtctgactaattacctattgtaacaGTTTGAACAATAAAGATAGCTCAAggccagacatggtggttcacgcctgtaatccctgcactttggtaggccttgcaagacaagagtattgcttgagcccaggagttcaagaccagcctgggcaacaaggcaaaaccctgtctctatgaaaattacaaaaattagccaagtgtggtggcacaagcctgtagtcccagctgctcgggaagctgaggtggaaggatcacctgagccggggatgtg
i cerAty1.NW_012002711v1   C 0 I 425
s chlSab2.chr17            28882938 879 -  71996105 gtagggcagagtgaaagattgaggcaagttttagagtcaacagtgaaagtttattaaaaagctttagagcaggaactgaagaaagcaaagtccgcttgaaagaggg-cgagtgggtgactggagagatcaggttcacggtttgatctttgacttgggattttaaacattgacatgcctcttggagcg-gggggg-g--ttttgcatcccttctcccttgattcttcccttggggtgggttgtccacgtgcacggtggcctgccagcacttggaaggggcaacatgcacattgtatttaccaaaattgtacacatgctcacttaaggcattcttcctttaccagccgagtgtttctggagaaaggttatatactggttcaactctgccattttgcctgttagtgcacatgcttacgtccgtccactagcccagctcctgagatcttattgggaagctgctgatgaccaacttgaggtgtttctgttgggaggctgcctttccctggcaccagctgcaaccaattatttttttcaagaggcagtttaacaacctcgtgaccatcatctgatggttgcctgacagtcctggtccaggtcccctctcctgccctgttcacgtctgactaattacctattgtaacaGTTTGAACAATAAAGATAGCTCAAggccagacatggtggttcacgcctggaatccctgcactttgggaggccttgcaaggcaggagtattgcttgagcccaggagttcaagaccagcctgggcaacaaggcaaaaccctgtctctatgaaaattacaaaaattagtcaagtgtggtggcacaagcctgtagtcccagctgctcgggaagctgaggtagaaggatcacctgagcccgggatgtg
i chlSab2.chr17            C 0 I 432
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964   0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e colAng1.NW_012115566v1    2486516 3146 -   3067355 I
e manLeu1.NW_012099233v1      58931 1153 +    290775 I

a score=144424.000000
s hg38.chr6_GL000254v2_alt   792179 29 +   4827813 gaggctacagtgagcagggatcgtgccac
s panTro5.chr6             29755309 29 + 175400573 gaggctacagtgagcagggatcgtgccac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29989933 29 + 173848474 gaggctacagtgagcagggatcgtgccac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5793384 29 +   6154872 gaggctacagtgagcagggattgtgccac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74492943 29 + 122973662 gaggctacagtgagaagtgatcgtgccac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29966647 29 + 172585720 gaggctacagtgagcagtgatcgtgccac
i rheMac8.chr4             I 425 C 0
s macFas5.chr4             29630583 29 - 170955103 gaggctacagtgagcagtgatcgtgccac
i macFas5.chr4             I 425 C 0
s macNem1.NW_012011356v1    2674011 29 -   2996164 gaggctacagtgagcagtgatcgtgccac
i macNem1.NW_012011356v1   I 425 C 0
s cerAty1.NW_012002711v1     426070 29 +    766320 gaggctacagtgagcagtgatcgtgccac
i cerAty1.NW_012002711v1   I 425 C 0
s chlSab2.chr17            28884249 29 -  71996105 gaggctacagtgagcagtgatcgtgccac
i chlSab2.chr17            I 432 C 0
s manLeu1.NW_012099233v1      60084 29 +    290775 gaggctacagtgagcagtgatcgtgccac
i manLeu1.NW_012099233v1   I 1153 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964  0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I
e colAng1.NW_012115566v1    2486516 3146 -   3067355 I

a score=5303977.000000
s hg38.chr6_GL000254v2_alt   792208 935 +   4827813 tgcacttcaacctgggtgacagagtgaaacactgtctcaaaattaaaacagataaaataaaaaTA----tagctcatactggtaccatgcacaagtagatttgtcaaaggtcagggccaccttcactcagagtctcttccgttggttgccaACTtgtaaacgaaaaagtatgtcagataggtctcaatcagtttagaattttcattttgccaaggttaaggacgcacccaggaaacaggtatatgtacctttctcaaagatgattgtgagggcttcaatatttaaaggtgagaagtgtgctagatgggaaagagggtgtggttatccacatgttgcaagagaaaaggagtaggcaggaaaacagtcaattatggattcatctcacactcagtaataggccctttacataaggtgaacataagactagctacttgaggagctatttaaccttctatctgtagctatctgctgaggaacaaaaggaaagacagttttttgcatgactcagctttcagcttaatttt-ttccatttggcatagtgaattggagtcctgagttttattttcctttcccaCCTCAAACCCCACAAGCTTTGCGTTGTTGCAGATTGTCCCTCTCAGAATATTTTACAAGATGGTGAAGTGCCTAATGAACATTTCTTTTGTCATAAAGTGAGTTTGGATCCTGAAGAAGCCATCATCTTAATCAGGCTTTGGGATCAAAGTTCCCCTTCACCCGAACCCTGAACAGCACAGCAGACAGGGAAGGACTTACTGAGATGGCTGCTCCCACTCTCCAGCCCCCACTTTCCTGACCATTCCTGGCAGGAAGAGCTGCTGAGCAGACTCCATGGGCTGCCCACACAGGGTCTGGACCTAGCTGTCTTCCTGTGCCCAGCAGCCTGTGAGCCATCCCAGTCCCCTATGTGCAGTGGTCAGC
s panTro5.chr6             29755338 935 + 175400573 tgcacttcaacctgggtgacagagtgagacactgtctcaaaattaaaacagataaaataaaaata----tagctcatactggtaccatgcaccagtagatttgtcaaaggtcagggccaccttcactcagagtctcttccattggttgccaACTtgtaaacgaaaaagtatgtcagataggtctcaatcagtttagaattttcattttgccaaggttaaggacgcacccaggaaacaggtatatgtacctttctcaaagatgattgtgagggcttcaatatttaaaggtgagaagtgggctggatgggaaagagggtgtggttatccacttgttgcaagagaaaaggagtaggcaggaaaacagtcaattatggattcatctcacactcagtaataggccctttacataaggtgaacataagactagctacttgaggagctatttaaccttctatctgtagctatctgctgaggaacaaaaggaaagacagttttttgcatgactcagctttcagcttaatttt-ttccatttggcatagtgaattggagtcctgagttttattttcctttcccaCCTCAAACCCCACAAGCTTTGCGTTGTTGCAGATTGTCCCTCTCAGAATATTTTACAAGTTGGTGAAGTGCCTAATGAACATTTCTTTTGTCATAAAGTGAGTTTGGATCCTGAAGAAGCCATCATCTTAATCAGGCTTTGGGATCAAAGTTCCCCTTCACCCGAACCCTGAACAGCACAGCAGACAGGGAAGGACTTACTGAGATGGCTGCTCCCACTCTCCAGCCCCCACTTTCCTGACCATTCCTGGCAGGAAGAGCTGCTGAGCAGACTCCATGGGCTGCCCACACAGGGTCTGGACCTAGCTGTCTTCCTGTGCCCAGCAGCCTGTGAGCCATCCCAGTCCCCTATGTGCAGTGGTCAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29989962 935 + 173848474 tgcacttcaacctgggtgacagagtgagacactgtctcaaaattaaaacagataaaataaaaaTA----tagctcatactggtaccatgcaccagtagatttgtcaaaggtcagggccaccttcactcagagtctcttccattggttgccaACTtgtaaacgaaaaagtatgtcagataggtctcaatcagtttagaattttcattttgccaaggttaaggacgcacccaggaaacaggtatatgtacctttctcaaagatgattgtgagggcttcaatatttaaaggtgagaagtgggctggatgggaaagagggtgtggttatccacttgttgcaagagaaaaggagtaggcaggaaaacagtcaattatggattcatctcacactcagtaataggccctttacataaggtgaacataagactagctacatgaggagctatttaaccttctatctgtagctatctgctgaggaacaaaaggaaagacagttttttgcatgactcagctttcagcttaatttt-ttccatttggcatagtgaattggagtcctgagttttattttcctttcccaCCTCAAACCCCACAAGCTTTGCGTTGTTGCAGATTGTCCCTCTCAGAATATTTTACAAGTTGGTGAAGTGCCTAATGAACATTTCTTTTGTCATAAAGTGAGTTTGGATCCTGAAGAAGCCATCATCTTAATCAGGCTTTGGGATCAAAGTTCCCCTTCACCCGAACCCTGAACAGCACAGCAGACAGGGAAGGACTTACTGAGATGGCTGCTCCCACTCTCCAGCCCCCACTTTCCTGACCATTCCTGGCAGGAAGAGCTGCTGAGCAGACTCCATGGGCTGCCCACACAGGGTCTGGACCTAGCTGTCTTCCTGTGCCCAGCAGCCTGTGAGCCATCCCAGTCCCCTATGTGCAGTGGTCAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5793413 930 +   6154872 tgcacttcaacctgggtgacagagtgagacactgtctcaaagttaaaacagataaaataaaaaTA----tagctcatactggtaccatgcaccagtagatttgtcaaaggtcagggccaccttcactcagagtctgttccattggttgccaACTtgtaaacgaaaaagtatgtaagataggtctcaatcagtttagaattttcattttgccaaggttaaggatgcacccaggaaacaggtatatgtacctttctcaaagatgattgtgagggcttcaatatttaaaggtgagaagtgggctggatgggaaagagggtgtggttatccacatgttgcaagagaaaaggagtaggcaggaaaacagtcaattacggattcatctcacactcagtaataggccctttacataaggtgaacataagactagctacttgaggagctatttaaccttctatctgtagctatctgctgaggaacaaaaggaaagacagttttttgcatgactcagctttcagcttaatttt-ttccttttggcatag-----tggagtcctgagttttattttcctttcccaCCTCAAACCCCACAAGCTTTGCGTTGTTGCAGATTGTCCCTCTCAGAATATTTTACAAGTTGGTGAAGTGCCTAATGAACATTTCTTTTGTCATAAAGTGAGTTTGGATCCTGAAGAAGCCATCATCTTAATCAGGCTTTGCGATCAAAGTTCCCCTTCACCCGAACCCTGAACAGCACAGCAGACAGGGAAGGACTTACTGAGATGGCTGCTCCCACTTTCCAGCCCCCACTTTCCAGACCATTCCTGGCAGGAAGAGCTGCTGAACAGACTCCATGGGCTGCCCACACAGGGTCTGGACCTAGCTGTCTTCCTGTGCCCAGCAGCCTGTGAGCCATCCCAGTCTCCTATGTGCAGTGGTCAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74492972 935 + 122973662 tgcacttcaacctgggtgacagagtgagacactgtctcaaaattaaaacagataaaataaaaaca----tagcttatactggtaccaagcaccaatagatttgtcaaaggtcagggtcaccttcactcagagtctcttccattggctgccaACTtgtaaatgaaaaagtatgtaagataggtctcaatcagtttagaattttcattttgccaacgttaaggacgcacgcaggaaacaggtatatgtgcctttctccaagacgattgtgagggcttcaatatttaaaggtgagaagtgggctggaggggaaagagggtgtggttatccacatgttgcaagagaaaacaagcaggcaggaaaacagtcaataatggattcatctcacactcagtaataggccctttacataaggtgaacataagactagctacctgaggagctatttaaccttctatctgtagctatctgctgaggaataaaaggaaagacagttttttgcatgactcagctttcagcttaatttc-ttccttttggcatagtgaattggagtccttagttttattttcctttTCCACCTCAAACCCCACAAGCTTTGCATTGTTGCAGATTGTTCCTCTCAGAATATTTTACAAGTTGGTGAAGTACCTAATGGACATTTCTTTTGTCATAAAGTGAGTTTGGATCCTGAAGAAGCCATCTTCTTAATCAGGCTTTGGGATCAAAATTCCCCCTCACCCGAACCCTGAACAGCACAGCAGACAGGGAAGGATTTACTGAGATGGCTGCTCCCACTCTCCAGCCCCCACTTTCCAGACCATTCCTGGCAGGAAGAGCTGCTGAGCAGGCTCCGTGGGCTGCCCACACAGGGTCTGAACCTAGCTGTCTTCCTGTGCCCAGCAGCCTGTGAGCCATCCCAGGCCCCTATGTGCAGTGGTCAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29966676 928 + 172585720 tgcacttcagcctgggtgacagagtgag--------tcaaaattaaaacaaataaaataaaaataaagatagttcaaactggtagcaagcactaatagatttgtcaaaggtcaaggccaccttcactcagagtctcttccattggttgccaACTtgtaaacgaaaaagtatgtaagataggtctcaatccgtttagaattttcattttgccaaggttaaggacacacccaggaaacaggtagatgtgcctttctcaaagatgattgtga-ggcctcaatatataaaggagagaagtgggctggaggggaaagagggtgtggttttccacgtgttgcaagagaaaaggggcaggtaggaaaacagtcaattacgtattcatctcacactcagtaattggccctttacataaggtgaatataagagtagctacctaaggagctatttaaccttctatctgtacctatctcctgaggaacaaaaggaaagacagttctttgcgtgactcagctttcagcttaattttcttccttttggcatagtgaattggagtcctgcgttttattttcctttcccaCTTCAATCCCCACAAGCTTTGCATTGTTGCAGATTGTTGCTCTCAGAATATTTTACAAGTTGGTGAAGTGCCTAATGGACATTTCTTTTGTCATAAAGTGAGTTTGGATCCTGAAGAAGCCATCTTCT---TAAGGCTTTGGAATCACAGTTCCCCTTCACCTGAGCCCTGAACAGCACAGCAGACAGGGAAGGATTTACTGAGATGGCTGCTCCCACTCTCCAGCCCCCACTTTCTAGACCATTCCTGGCAGGAAGAGCTGCTGAGCAGACTCCATGGGCTGCCCATGCAGGGTCTGGACCTAGCTGTCTTTCTGTGCCCAGCAGCCTGTGAGCCATCCCAGGCCCCTATGTGCAGTGGTCAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29630612 929 - 170955103 tgcacttcagcctgggtgacagagtgag--------tcaaaattaaaacaaataaaataaaaataaagatagttcaaactggtagcaagcactaatagatttgtcaaaggtcaaggccaccttcactcagagtctcttccattggttgccaACTtgtaaacgaaaaagtatgtaagataggtctcaatccgtttagaattttcattttgccaaggttaaggacacacccaggaaacaggtagatgtgcctttctcaaagatgattgtgagggcttcaatatataaaggagagaagtgggctggaggggaaagagggtgtggttttccacatgttgcaagagaaaaggggcaggtaggaaaacagtcaattatgtattcatctcacactcagtaattggccctttacataaggtgaatataagactagctacctaaggagctatttaaccttctatctgtacctatctcctgaggaacaaaaggaaagacagttctttgcgtgactcagctttcagcttaattttcttccttttggcatagtgaattggagtcctgcgttttattttcctttcccaCTTCCATCCCCACAAGCTTTGCATTGTTGCAGATTGTTGCTCTCAGAATATTTTACAAGTTGGTGAAGTGCCTAATGGACATTTCTTTTGTCATAAAGTGAGTTTGGATCCTGAAGAAGCCATCTTCT---TAAGGCTTTGGAATCACAGTTCCCCTTCACCTGAGCCCTGAACAGCACAGCAGACAGGGAAGGATTTACTGAGATGGCTGCTCCCACTCTCCAGCCCCCACTTTCTAGACCATTCCTGGCAGGAAGAGCTGCTGAGCAGACTCCATGGGCTGCCCATGCAGGGTCTGGACCTAGCTGTCTTTCTGTGCCCAGCAGCCTGTGAGCCATCCCAGGCCCCTATGTGCAGTGGTCAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2674040 929 -   2996164 tgcacttcagcctgggtgacagagtgag--------tcaaaattaaaacaaataaaataaaaataaagatagttcaaactggtaccaagcactaatagatttgtcaaaggtcaaggccaccttcactcagagtctcttccattggttgccaACTtgtaaatgaaaaattatgtaagataggtctcaatccgtttagaattttcattttgccaaggttaaggacacacccaggaaacaggtagatgtgcctttctcaaaggtgattgtgagggcttcaatatataaaggagagaagtgggctggaggggaaagagggtgtggttttccacatgttgcaagagaaaaggggcaggtaggaaaacagtcaattacgtattcatctcacactcagtaattggccctttacataaggtgaatataagagtagctacctaaggagctatttaaccttctatctgtacctatctcctgaggaacaaaaggaaagacagttctttgcgtgactcagctttcagcttaattttcttccttttggcatagtgaattggagtcctgcgttttattttcctttcccaCTTCCGTCCCCACAAGCTTTGCATTGTTGCAGATTGTTGCTCTCAGAATATTTTACAAGTTGGTGAAGTGCCTAATGGACATTTCTTTTGTCATAAAGTGAGTTTGGATCCTGAAGAAGCCACCTTCT---TAAGGCTTTGGAATCACAGTTCCCCTTCACCCGAGCCCTGAACAGCACAGCAGACAGGGAAGGATTTACTGAGATGGCTGCTCCCACTCTCCAGTCCCCACTTTCTAGACCATTCCTGGCAGGAAGAGCTGCTGAGCAGACTCCATGGGCTGCCCATGCAGGGTCTGGACCTAGCTGTCTTTCTGTGCCCAGCAGCCTGTGAGCCGTCCCAGGCCCCTATGTGCTGTGGTCAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     426099 932 +    766320 tgcacttcagcctgggtgacagagtgag--------tcagaattaaaacaaacaaaataaaaTtaaagatagttcaaactggtaccaagcactaatagatttgtcaaaggtcaaggccaccttcactcagagtctcttccattggttgccaACTtgtaaacgaaaaagtatgtaagataggtctcaatccatttagaattttcattttgccaaggttaaggacacagccaggaaacaggtagatgtgcctttctcaaagatgattgtgagggcttcaatatataaaggagagaagtgggctggaggggaaagagggtgtggttatccacatgttgcaagagaaaaggggcaggtaggaaaacagtcaattgtgtattcatctcacactcagtaataggccctttacataaggtgaatataagactagctacctaaggagctatttaaccttctatctgtacctatctcctgaggaacaaaaggaaagacagttctttgcgtgactcagctttcagcttaattttcttccttttggcatagtgaattggagtcctgcgttttattttcctttcccaCTTCAATCCCCACAAGCTTTGCATTGTTGCAGATTGTTCCTCTCAGAATATTTTACAAGTTGGTGAAGTGCCTAATGGACATTTCTTTTGTCATAAAGTGAGTTTGGATCCTGAAGAAGCCATCTTCTTAATAAGGCTTTGGAATCACAGTTCCCCTTCACCCGAGCCCTGAACAGCACAGCAGACAGGGAAGGATTTACTGAGATGGCTGCTCCCACTCTCCAGTCCCCACTTTCTAGACCATTCCTGGCAGGAAGAGCTGCAGAGCAGACTCCATGGGCTGCCCATGCAGGGTCTGGACCTAGCTGTCTTTCTGTGCCCAGCAGCCTGTGAGCCATCCCAGGCCCCTATGTGCAGTGGTCAGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28884278 932 -  71996105 tgcacttcaacctgggtgacagagtgag--------tcaaaattaaaacaaacaaaataaaaataaagatagttcaaactggtaccaagcactaatagatttgtcaaaggtcaaggccaccttcactcagagtctcttccattggttgccaACTtgtaaacgaaaaagtatgtaagataggtctcaatccatttagaattttcattttgccaaggttaagggcacacccaggaaacaggtagatgtgcctttctcaaagatgattgtgagggcttcaatatataaaggagagaagtgggctggaggggaaagagggtgtggttatccacatgttgcaagagaaaaggggcaggtaggaaaacagtcaattatgtattcatctcacactcagtaattggccctttacataaggtgaatataagactagctacctaaggagctatttaaccttctatctgtacctatctcctgaggaacaaaaggaaagacagttttttgcgtgactcagctttcagcttaattttcttccttttggcatagtgaattggagtcctgagttttattttcctttcccaCTTCAGTCCCCACAAGCTTTGCATTGTTGCAGATTGTTCCTCTCAGAATATTTTACAAGTTGGTGAAGTGCCTAATGGACATTTCTTTTGTCATAAAGTGAGTTTGGATCCTGAAGAAGCCATCTTCTTAATAAGGCTTTGGAATCACAGTTCCCCTTCACCCGAGCCCTGAACAGCACAGCAGACAGGGAAGGATTTACTGAGATGGCTGCTCCCACTCTCCAGCCCCCACTTTCTAGACCATTCCTGGCAGGAAGAGCTGCTGAGCAGACTCCATGGGCTGCCCATGCAGGGTCTGGACCTAGCTGTCTTTTTGTGCCCAGCAGCCTGTGAGCCATCCCAGGCCCCTATGAGCAGTGGTCAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      60113 932 +    290775 tgcacttcagcctgggtgacagagtgag--------tcaaaattaaaacaaacaaaataaaaTtaaagatagttcaaactggtaccaagcactaatagatttgtcaaaggtcaaggccaccttcactcagagtctcttccattggttgccaACTtgtaaacgaaaaagtatgtaagataggtctcaatccatttagaattttcattttgccaaggttaaggacacagccaggaaacaggtagatgtgcctttctcaaagatgattgtgagggcttcaatatataaaggagagaagtgggctggaggggaaagagggtgtggttatccacatgttgcaagagaaaaggggcaggtaggaaaacagtcaattatgtattcatctcacactcagtaataggccctttacataaggtgaatataagactagctacctaaggagctatttaaccttctatctgtacctatctcctgaggaacaaaaggaaagacagttctttgcgtgactcagctttcagcttaattttcttccttttggcatagtgaattggagtcctgcgttttattttcctttcccaCTTCAATCCCCACAAGCTTTGCATTGTTGCAGATTGTTCCTCTCAGAATATTTTACAAGTTGGTGAAGTGCCTAATGGACATTTCTTTTGTCATAAAGTGAGTTTGGATCCTGAAGAAGCCATCTTCTTAATAAGGCTTTGGAATCACAGTTCCCCTTCACCCGAGCCCTGAACAGCACAGCAGACAGGGAAGGATTTACTGAGATGGCTGCTCCCACTCTCCAGTCCCCACTTTCTAGACCATTCCTGGCAGAAAGAGCTGCAGAGCAGACTCCATGGGCTGCCCATGCAGGGTCTGGACCTAGCTGTCTTTCTGTGCCCAGCAGCCTGTGAGCCATCCCAGGCCCCTATGTGCAGTGGTCAGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2489662 928 -   3067355 TGCACTTCAGCCTGGGTGACAGAGTGAG--------TCAAAATTAAAACAAACAAAATAAAAataaaggtagttcaaactggtaccaagcactaatagatttgtcaaaggtcaaggccaccttcactcagagtcccttccattggttgccaACTtgtaaatgaaaaagtatgtaagataggtctcaatccatttagaattttcattttgccaaggttaaagacacacccaggaaacaggtatatgtgcctttctcaaagatgattgtgagggcttcaatatataaaggagagaagtgggctggaggggaaagaaggtgtggttatccacatgttgcaagagaaaaggggcaggtaggaaaacagtcaattatgtattcatctcacactcagtaattgtccctttacataaggtgaatataagactagctacctaaggagctatttaaccttctatctgtacctatctcctgaggaacaaaaggaaagacggttttttgcatgactcagctttcagcttaattttcttccttttggcatagtgaattggagtcctgagttttattttcctttcccaCTTCAGTCCCCACAAGCTTTGCATTGTTGCAGATTGTTCCTCTCCGAATATTTTACAAGTTGGTGAAGTGCCTGATGGACATTTCTTTTGTCATAAAGTGAGTTTGGATCCTGAAGAAGCCATCTTCTTAATAAGGCTTTGGAATCACAGTTCCCCTTCACCCGAACCCTGAACAGCACAGCAGACAGGGAAGGATTTACTGAGATGGCTGCTCCCACTCTCCAGCCCCCACTTTCTAGACCATTCCTGGCAGGAAGAGCTTCTGAGCAGACTCCATGGGCTGCCCATGCAGGGTCTGGACCTAGCTATCTTTCTGTGCCCAGCAGCCTGTGAG----CCCAGGCCCCTATGTGCAGTGGTCAGC
i colAng1.NW_012115566v1   I 3146 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964   0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     107251 1206 -    457564 I
e cebCap1.NW_016108310v1      94789 1246 +    106389 I

a score=4353655.000000
s hg38.chr6_GL000254v2_alt   793143 562 +   4827813 ACCCACAAGCCAGCCTTCATAGGGATTCAGTTCATGGGTGTTGCCCTGAGCCTGGCACAGTGGCCTCCCCAGCTTAGCATCTGCAGTTCGGGTCAGGGTGTTCTTAACGGCCCTCACCTATGCCTTTTCTGGCCACACATGAGTTTGGATGAAGCAGGAGTCTCTTCCATAGCTCCTTTTCATCTGAGATGTCCATGACTGGCTCAAGTGAACCACAGTGTCAGGAGAGGGGCACGGAAGCTGCACCCTAAATTCCCCGGGACCTGTGGCAGGCCTTCCTGGTGACCTCTGCCTTCTCAGGTGA----------CTTCTGCCCTCCTGGGTGACATTAGTTCTCCCCTCTCAAGTGATCTGTGCCCTCCTAGGTTACCTCAGCTCTCCCAGGTGACCTCTGCCTTTCCAGATGACTTCAGTCTTTTCAGGTGACCTCAGCCCTCCTAAGTGACATTAGTCCTCCCTGGTTATCTCTGCCCTCCCTGGTGAACTCAGGTCTTCCAGGGGACCTCTGCTTTCCCAGATGATCTCTGCCTTCTCAGGTGACATTAGTTCTCCTAGGGGATATTAA
s panTro5.chr6             29756273 562 + 175400573 ACCCACAAGCCAGCCTTCATAGGGATTCAGTTCATGGGTGTTGCCCTGAGCCTGGCACAGTGGCCTCCCCAGCTTAGCATCTGCAGTTCGGGTCAGGGTGTTCTTAACGGCCCTCACCTATGCCTTTTCTGGCCACACATGAGTTTGGATGAAGCAGGAGTCTCTTCCATAGCTCCTTTTCATCTGAGATGTCCATGACTGGCTCAAGTGAACCACAGTGTCAGGAGAGGGGCACGGAAGCTGCACCCTAAATTCCCCGGGACCTGTGGCAGGCCTCCCTGGTGACCTCTGCCTTCTCAGGTGA----------CTTCTGCCCTCCTGGGTGACATTAGTTCTCCCCTCTCAAGTGACCTGTGCCCTCCTAGGTTACCTCAGCTCTCCCAGGTGACCTCTGCCTTTCCAGATGACTTCAGTCTTTTCAGGTGACCTCAGCCCTCCTAAGTGACATTAGTCCTCCCTGGTTATCTCTGCCCTCCCTGGTGAACTCAGGTCTTCCAGGGGACCTCTGCTTTCCCAGATGATCTCTGCCTTCTCAGATGACATTAGTCCTCCTAGGGGATATTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29990897 561 + 173848474 ACCCACAAGCCAGCCTTCATAGGGATTCAGTTCATGGGTGTTGCCCTGAGCCTGGCACAGTGGCCTCCCCAGCTTAGCATCTGCAGTTCGGGTCAGGGTGTTCTTAACGGCCCTCACCTATGCCTTTTCTGGCCACACATGAGTTTGGATGAAGCAGGAGTCTCTTCCATAGCTCCTTTTCATCTGAGATGTCCATGACTGGCTCAAGTGAACCACAGTGTCAGGAGAGGGGCACGGAAGCTGCACCCTAAATTCCCCGGGACCTGTGGCAGGCCTCCCTGGTGACCTCTGCCTTCTCAGGTGA----------CTTCTGCCCTCCTGGGTGACATTAGTTCTCCCCTCTCAAGTGACCTGTGCCCTCCTAGGTTACCTCAGCTCTCCCAGGTGACCTCTGCCTTTCCAGATGACTTCAGTC-TTTCAGGTGACCTCAGCCCTCCTAAGTGACATTAGTCCTCCCTGGTTATCTCTGCCCTCCCTGGTGAACTCAGGTCTTCCAGGGGACCTCTGCTTTCCCAGATGATCTCTGCCTTCTCAGGTGACATTAGTCCTCCTAGGGGATATTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5794343 562 +   6154872 ACCCACAAGCCAGCCTTCATAGGGATTCAGTTCATGGGTGTTGCCCTGAGCCTGGCACAGTGGCCTCCCCAGCTTAGCATCTGCAGTTCGGGTCAGGGTGTTCTTAACGGCCCTCACCTGTGCCTTTTCTGGCCACACATGAGATTGGATGAAGCAGGAGTCTCTTCCGTAGCTCCTTGTCATCTGAGATGTCCATGACTGGCTCAAGTGAACCACAGTGTCAGGAGAGGGGCACGGAAGCTGCACCCTAAATTCCCTGGGACCTGTGGCAGGCCTCCCTGGTGACCTCTGCCTTCTCAGGTGA----------CTTCTGCCCTCCTGGGTGACATTAGTTCTCCCCTCTCAAGTGACCTGTGCCCTCCTAGGTTACCTCAGCTCTCCCAGGTGACCTCTGCCTTTCCAGATGACTTCAGTCTTTTCAGGTGACCTCAGCCCTCCTAAGTGACATTAGTCCTCCCTGGTTATCTCTGCCCTCCCTGGTGAACTCAGGTCTTCCAGGGGACCTCTGCTTTCCCAGATGATCTCTGCCTTCTCAGGTGACATTAGTCTTCCTAGGGGATATTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74493907 561 + 122973662 ACCCACAAGCCAGGCTTCATAGGGATTCAGTTCATGTGTGTTGCCCTGAGCCTGGCACAGTGGCCTCCCCAGCTTAGCTTCTGCAGTTTGGGTCAGGGTGGTCTTAACGGCCCTAACCTATGCCCTTTCTGGCCACACATGAGTTTGGATGAAGCAGGAGTCTCTTCCGTAGCTCCTTGTCAACTGAGATGTCCATGACTGGCTCAAGTGAACCGCAGTGTCAGGAGAGGGGCACGGAAGCTGCACTCTAAATTCCCTGGGACCTGTGGCAGGCCTCCCCGGTGACCTCTGCCTTCTCAGGTGA----------CTTCTGCCCTCGTGGGTGACATTAGTCCTCCCCTGTCAAGTGACCTGTGCCTTCCTAGGTTACCTCAGCTCTCCCAGGTGACCTCTGCCTTTCCAGATGACTTCAGTCTTTTCAGGTGACCTCAGCCCTCCTAAGTGACATTAGTCCTCCCTGGTTATCTCTGCCCTCCCT-GTGAATTCAGGTCTTCCAGGGGACCTCTGCTTTCCCAGATGTTCTCTGCCCTTTCAGGTGACATTAGTCCTCCTAGGGGATATTAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29967604 561 + 172585720 ACCCACAA-CCAGCCTTCATGGGGATTCAGTTCAAGGGTGTTGCCCTGAGCCCGGCACAATGGCCTCCCCAGCTTAGCATCTGCAGTTGGGGTCAGGGTGGTCTTAACGGCCTTCACCTATGCCCTTTCTGGCCACACATGAGTTTGGATGAAGTAGGAGTCGCTTCAGTAGCTCCTTGTCAACTGCGATGTCCATGACTGGCTCAAGTGAAGCACGGCGTCAGGAGAGGGGCATGGAAGCTGCACCCTAAATTCCCTGGGACCTGTGGCAGGCCTCCCCGGTGATCTCTGCCTTCTCAGGTGA----------CTTCTGCCCTCCTGGGTGACATTAGTTCTCCCCTCTCAAGTGACCTGTGCCCTCCTAGGTTACCTCAGCTCTCCCAGGTGACCTCTGCCTTTACAGATGACTTCAGTCTTTTCAGGTGACCTCAGCCCTCCTAAGTGACATTAGTTCTCCCTGGTTATCTCTGCCCTCCCTGGTGAACTCAGGTCTTCCAGGGGACCTCTGCTTTCCTAGATGATCTCTGCCCTCTCGGGTGACATTAGTCCTCCCAGGGGATATTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29631541 561 - 170955103 ACCCACAA-CCAGCCTTCATGGGGATTCAGTTCAAGGGTGTTGCCCTGAGCCCGGCACAGTGGCCTCCCCAGCTTAGCATCTGCAGTTGGGGTCAGGGTGGTCTTAACGGCCTTCACCTATGCCCTTTCTGGCCACACATGAGTTTGGATGAAGTAGGAGTCGCTTCAGTAGCTCCTTGTCAACTGCGATGTCCATGACTGGCTCAAGTGAAGCACGGCGTCAGGAGAGGGGCATGGAAGCTGCACCCTAAATTCCCTGGGACCTGTGGCAGGCCTCCCCAGTTATCTCTGCCTTCTCAGGTGA----------CTTCTGCCCTCCTGGGTGACATTAGTTCTCCCCTCTCAAGTGACCTGTGCCCTCCTAGGTTACCTCAGCTCTCCCAGGTGACCTCTGCCTTTACAGATGACTTCAGTCTTTTCAGGTGACCTCAGCCCTCCTAAGTGACATTAGTTCTCCCTGGTTATCTCTGCCCTCCCTGGTGAACTCAGGTCTTCCAGGGGACCTCTGCTTTCCTAGATGATCTCTGCCCTCTCAGGTGACATTAGTCCTCCCAGGGGATATTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2674969 561 -   2996164 ACCCACAA-CCAGCCTTCATGGGGATTCAGTTCAAGGGTGTTGCCCTGAGCCCGGCACAGTGGCCTCCCCAGCTTAGCATCTGCAGTTGGGGTCAGGGTGGTCTTAACGGCCTTCACCTATGCCCTTTCTGGCCACACATGAGTTTGGATGAAGTAGGAGTCGCTTCAGTAGCTCCTTGTCAACTGCGATGTCCATGACTGGCTCAAGTGAAGCACGGCGTCAGGAGAGGGGCATGGAAGCTGCACCCTAAATTCCCTGGGACCTGTGGCAGGCCTCCCCGGTGATCTCTGCCTTCTCAGGTGA----------CTTCTGCCCTCCTGGGTGACATTAGTTCTCCCCTCTCAAGTGACCTGTGCCCTCCTAGGTTACCTCAGCTCTCCCAGGTGACCTCTGCCTTTACAGATGACTTCAGTCTTTTCAGGTGACCTCAGCCCTCCTAAGTGACATTAGTTCTCCCTGGTTATCTCTGCCCTCCCTGGTGAACTCAGGTCTTCCAGGGGACCTCTGCTTTCCTAGATGATCTCTGCCCTCTCAGGTGACATTAGTCCTCCCAGGGGATATTAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     427031 558 +    766320 ACCCACAA-CCAGCCTTCATGGGGATTCAGTTCAAGGGTGTTGCCCTGAGCCCGGCACAGTGGCCTCCCCAGCTTAGCATCTGCAGTTGGGGTCAGGGTGGTCTTAACGGCCTTCACCTATGCCCTTTCTGGCCACACATGAGTTTGGATGA---AGGAGTCGCTTCAGTAGCTCCTTGTCAACTGCGATGTCCATGACTGGCTCAAGTGAAGCACAGCGTCAGGAGAGGGGCATGGAAGCTGCACCCTAAATTCCCTGGGACCTGTGGCAGGCCTCCCCGGTGATCTCTGCCTTCTCAGGTGA----------CTTCTGCCCTCCTGGGTGACATTAGTTCTCCCCTCTTAAGTGACCTGTGCCCTCCTAGGTTACCTCAGCTCTCCCAGGTGACCTCTGCCTTTACAGATGACTTCAGTCTTTTCAGGTGGCCTCAGCCCTCCTAAGTGACATTAGTTCTCCCTGGTTATCTCTGCCCTCCCTGGTGAACTCAGGTCTTCCAGGGGACCTCTGCTTTCCTAGATGATCTCTGCCCTCTCAGGTGACATTAGTCCTCCCAGGGGATATCAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28885210 561 -  71996105 ACCCACAA-CCAGCCTTCATGGGGATTCAGTTCAAGGGTGTTGCCCTGAGCCCGGCACAGTGGCCTCCCCAGCTTAGCATCTGCAGTTGGGGTCAAGGTGGTCTTAACAGCCTTCACCTATGCCCTTTCTGGCCACACATGAGTTTGGATGAAGTAGGAGTCGCTTCAGTAGCTCCTTGTCAACTGCGATGTCCATGACTGGCTCAAGTGAAGCACAGCATCAGGAGAGGGGCAGGGAAGCTGCACCCTAAATTCCCTGGGACCTGTGGCAGGCCTCCCCGGTGATCTCTGCCTTCTCAGGTGA----------CTTCTGCCCTCCTGGGTGACATTAGTTCTCCCCTCTCAAGTGACCTGTGCCCTCCTAGGTTACCTCAGCTCTCCCAGGTGACCTCTGCCTTTACAGATGACTTCAGTCTTTTCAGGTGACCTCAGCCCTCTTAAGTGACATTAGTTCTCCCTGGTTATCTCTGCCCTCCCTGGTGAACTCAGGTCTTCCAGGGGACCTCTGCTTTCCTAGATGATCTCTGCCCTCTCAGGTGACATTAGTCCTCCCAGGGGATATTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      61045 553 +    290775 ACCCACAA-CCAGCCTTCATGGGGATTCAGTTCAAGGGTGTTGCCCTGAGCCCGGCACAGTGGCCTCCCCAGCTTAGCATCTGCAGTTGGGGTCAGGGTGGTCTTAACGGCCTTCACCTATGCCCTTTCTGGCCACACATGAGTTTGGATGA---AGGAGTCGCTTCAGTAGCTCCTTGTCAACTGCGATGTCCATGACTGGCTCAAGTGAAGCACAGCGTCAGGAGAGGGGCATGGAAGCTGCACCCTAAATTCCCTGGGACCTGTGGCAGGCCTCCCCGGTGATCTCTGCCTTCTCAGGTGA----------CTTCTGCCCTCCTGGGTGACATTAGTTCTCC-----CAAGTGACCTGTGCCCTCCTAGGTTACCTCAGCTCTCCCAGGTGACCTCTGCCTTTACAGATGACTTCAGTCTTTTCAGGTGGCCTCAGCCCTCCTAAGTGACATTAGTTCTCCCTGGTTATCTCTGCCCTCCCTGGTGAACTCAGGTCTTCCAGGGGACCTCTGCTTTCCTAGATGATCTCTGCCCTCTCAGGTGACATTAGTCCTCCCAGGGGATATCAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2490590 561 -   3067355 ACCCACAA-CCAGCCTTCATGGGGATTCAGTTCAAGGGTGTTGCCCTGAGCCCGGCACAGTGGCCTCCCCAGCTTAGCATCTGCAGTTGGGGTCAGGGTGGTCTTAACGGCCTTCACCTATGCCCTTTCTGGCCACACATGAGTTTGGATGAGGTAGGAGTCACTTCAGTAGCTCCTTGTCAACTGCGATGTCCATGACTGGCTCAAGTGAAGCACAGTGTCAGGAGAGGGGCATGGAAGCTGCACCCTAAATTCCCTGGGACCTGTGGCAGGCCTCCCCGGTGACCTCTGCCTTCTCAGGTGA----------CTTCTGCCCTCCTGGGTGACATTAGCTCTCCCCTCTCAAGTGACCTGTGCCCTCCTAGGTTACCTCAGCTGTCCCAGGTGACCTCTGCCTTTCCAGATGACTTCAGTCTTTTCAGGTGACCTCAGCCCTCCTAAGTGACATTAGTTCTCCCTGGTTATCTCTGCCCTCCCTGGTGAACTCAGGTCTTCCAGGGGACCTCTGCTTTCCTAGATGATCTCTGCCCTCTCAGGTGACATTAGTCCTCCCAGGGGATACTAC
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016108310v1      96035 571 +    106389 ACCCACAAGCCAGCCTTCATGGGGATTCAGTTCATGGGTGTTGCCCTGAGCATGG-ACAGTGGCCTTTCCACCTTAGAATCTGCAGTTGAGTTCAGGGTGGCCTTAACAATCCTCACCTATTCCCTTTCCAGCCACACAGGAGCTTGGATGAAACAGGAGTCTCTTTAGTAGCTCCTTGTAAGCTGAGATGTGCATGACCAGCTCAAGTGAAGCACAGTGTCAAGAGAGTGGCACAGAGGCTGTACCCTAAATTCCCAGGGACCTGTGACAGGCCTCCCAGATGACCTCTGCCTTCTCATGTGACATCAGTTCTCCTCTGCCCTCCTGAGTGACATTAGTTCTCCCCTCTCAATTGAACTATACCCTCCTAGGTTACCTCAGCTCTCCCAGGTGACCTCTGCCTTTTCAGATGACTTTAGTCTTTTCAGGTTACCTCAGTGCTTCTAGGTGACATTAGTCCTACTTGGTGATCTCTGCCTTCCCTGGTGAACTCAGGTCTTCCAGGGGACCTCTGCTTTCCCAGATGATCTCTGCCCTCTCAGGTGACATTAGTCCTCCAAGGGGACATTAC
i cebCap1.NW_016108310v1   I 1246 C 0
s aotNan1.NW_018509740v1     108457 571 -    457564 ACCCACAAGCCAGCCTTCATGGGGATTCAGTTCATGGGTGTTGCCCTGAGCATGG-ACAGTGGCCTTTCCAGGTTAGAATCTGCAGTTGGGGTCAGGGTGGCCTTAACAGTCCTCACCTATGCCCTTTCCAGCCACACAGGAGCTTGGATGGAGCAGGAGTCTCTTTAGTAGCTCCTTGTAAACTGAGATGTGCATGACCAGCTCAAGTGAAGCACAGTGTCAAGACAGCGGCACAGAGGCTCTACCCTAAATTCCCCGGGACCTGTGACAGGCCTCCCAGATGACCTCTGCCTTCTCATGTGACATCAGTTCTCCTTTTCCCTCCTAAGTGACATTAGTGCTTCCCTCTCAAGTGAACTATGCCCTCCTAGGTTACCTCAGCTCTCCCAGGTGACCTCTGCCTTTTCAGATGACTTCAGTCTTTTCAGGTGACCTCAGTGCTTCTAGGTGACATTAGTCCTACTTGGTGATCTCTGCCTTCCCTGGTGAACTCAGGTCTTCCAGGGGACCTCTGCTTTCCCAGATGATCTCTGCCCTCTCAGGTGACATTAGTCCTCCAAGGGGACATTAC
i aotNan1.NW_018509740v1   I 1206 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            63964   0 -    242197 C
e otoGar3.GL873550            17838 8883 +  18854210 I

a score=9228403.000000
s hg38.chr6_GL000254v2_alt   793705 1065 +   4827813 CTCTCCCAAGTGACCTCTTCCCTTCCAAGTGACCTGT----TTCCTCAGGTGACCTCAGCTCTGCCAGGGGACTTCTGCCTTTCCAGGTAACCTCTGCCCTCTTGGTGACATAGTGTGCTCAGGTGACATTAGCCCTCTCAGGTGACCTCAACCCTCCAAGGTGACGTCAGC-CTTGGTGAAGTCTTTCCATGATGACTTTGGCTTTTGCCAGAGGTAGGCTACTGCGGGGGCATAAGCCATATCATGCCATGAGCCACTATCCTGCTCATGTTCCAGAATGAGG-AGACATCTGGGTGCTGGCCCAGCTGCTGGCCAATGAGAGGCTTGCCAAGCATGGTACTCTCCAAGGTGACCTCTGCCCTCTCAGGTGACACAGTCCTCCCATGTGACATTAGCTCACAGTGGACAGCTACCCACGAGGCATCACACAGCCAGGACAGGGGACGGCCACACTGGCTGGGTAATTGTGACTTACAGACAAGGCACCTTCTGTCCCCTGCTCATTTTGAGCCTCCAGGGTATCCCCTGCTGAGAGTCCCACAGGAGCCTGTGA-CTGGCCAGGG------AC-CCGACACCCCAAGTCAGATGCCTCTTGTCCCCATCAGCAAATGGGATCACAGCTGCCCTGTGACCACCTTCTGCATCCTGGTGTCACAACCTTCTGGCCCTGACCTTATGCAGGGGACTCTTACAACCCTGCTGGTCCTTCCACCTCCCAGCTGGCCACCCTCCCAACCACCCTCCCTGCCCATGGCTAGACCAAGCCCAGATGACAGCTTCTCTCTGTCCTGTGTCCCCTGCCCTGACCCCACATCCAGGAGAAGGCCACACACCCTCCAGCACCCCTGGTCACCCCACCAGCTCCCACCTGTCCTCACTGCTTCAAAGGCAGGCCTGCCCTTCTGGAGCCATGGCCCTGGAAGCCACTAAGCAGTGCCTCCAGCCAGGCCCCAGGGG-CATTCCCA---CCCCTCCTCTCCTGGCCGAGACCACATGATGGGGTCACTGGATGGGACAGTGAAAGGCCTTGGGGTCTGGAAGCAACCACCACTGCCC--------------AAC--------------TGCCACTGCCCAACC
s panTro5.chr6             29756835 1065 + 175400573 CTCTCCCAAGTGACCTCTTCCCTTCCAAGTGACCTGT----TTCCTCAGGTGACCTCAGCTCTGCAAGGGGACTTCTGCCTTTCCAGGTAACCTCTGCCCTCTTGGTGACATAGTGTGCTCAGGTGACATTAGCCCTCTCAGGTGACCTCAACCCTCCAAGGTGACGTCAGC-CTTGGTGAAGTCTTTCCATGATGACTTTGGCTTTTGCCAGAGGTAGGCTACTGCAGGGGCATAAGCCATATCATGCCATGAGCCACTATCCTGCTCATGTTCCAGAATGAGG-AGACATCTGGGTGCTGGCCCAGCTGCTGGCCAATGAGAGGCTTGCCAAGCATGGTACTCTCCAAGGTGACCTCTGCCCTCTCAGGTGACACAGTCCTCCCATGTGACATTAGCTCACAGTGGACAGCTACCCACGAGGCATCACACAGCCAGGACAGGGGATGGCCACACTGGCTGGGTAATTGTGACTTACAGACAAGGCACCTTCTGTCCCCTGCTCATTTTGAGCCTCCAGGGTATCCCCTGCTGAGAGTCCCACAGGAGCCTGTGA-CTGGCCAGGG------AC-CCGACACCCCAAGTCAGATGCCTCTTGTCCCCATCAGCAAATGGGATCACAGCTGCCCTGTGACCACCTTCTGCATCCTGGTGTCACAACCTTCTGGCCCTGACCTTATGCAGGGGACTCTTACAACCCTGCTGGTCCTTCCACCTCCCAGCTGGCCACCCTCCCAACCACCCTCCCTGCCCATGGCTAGACCAAGCCCAAATGACAGCTTCTCTCTGTCCTGTGTCCCCTGCCCTGACCCCACATCCAGGAGAAGGCCACACACCCTCCAGCAGCCCTGGTCACCCCACCAGCTCCCACCTGTCCTCACTGCTTCAAAGGCAGGCCTGCCCTTCTGGAACCATGGCCCTGGAAGCCACTAAGCAGTGCCTCCAGCAAGGCCCCAGGGG-CATTCCCA---CCCCTCCTCTCCTGGCCGAGACCACATGATGGGGTCACTGGATGGGACAGTGAAAGGCCTTGGGGTCTGGAAGCAACCACCACTGCCC--------------AAC--------------TGCCACTGCCCAACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29991458 1065 + 173848474 CTCTCCCAAGTGACCTCTTCCCTTCCAAGTGACCTGT----TTCCTCAGGTGACCTCAGCTCTGCCAGGGGACTTCTGCCTTTCCAGGTAACCTCTGCCCTCTTGGTGACATAGTGTGCTCAGGTGACATTAGCCCTCTCAGGTGACCTCAACCCTCCAAGGTGACGTCAGC-CTTGGTGAAGTCTTTCCATGATGACTTTGGCTTTTGCCAGAGGTAGGCTACTGCGGGGGCATAAGCCATATCATGCCATGAGCCACTATCCTGCTCATGTTCCAGAATGAGG-AGACATCTGGGTGCTGGCCCAGCTGCTGGCCAATGAGAGGCTTGCCAAGCATGGTACTCTCCAAGGTGACCTCTGCCCTCTCAGGTGACACAGTCCTCCCATGTGACATTAGCTCACAGTGGACAGCTACCCACGAGGCATCACACAGCCAGGACAGGGGATGGCCACACTGGCTGGGTAATTGTGACTTACAGACAAGGCACCTTCTGTCCCCTGCTCATTTTGAGCCTCCAGGGTATCCCCTGCTGAGAGTCCCACAGGAGCCTGTGA-CTGGCCAGGG------AC-CCGACACCCCAAGTCAGATGCCTCTTGTCCCCATCAGCAAATGGGATCACAGCTGCCCTGTGACCACCTTCTGCATCCTGGTGTCACAACCTTCTGGCCCTGACCTTATGCAGGGGACTCTTACAACCCTGCTGGTCCTTCCACCTCCCAGCTGGCCACCCTCCCAACCACCCTCCCTGCCCATGGCTAGACCAAGCCCAAATGACAGCTTCTCTCTGTCCTGTGTCCCCTGCCCTGACCCCACATCCAGGAGAAGGCCACACACCCTCCAGCAGCCCTGGTCACCCCACCAGCTCCCACCTGTCCTCACTGCTTCAAAGGCAGGCCTGCCCTTCTGGAACCATGGCCCTGGAAGCCACTAAGCAGTGCCTCCAGCAAGGCCCCAGGGG-CATTCCCA---CCCCTCCTCTCCTGGCCGAGACCACATGATGGGGTCACTGGATGGGACAGTGAAAGGCCTTGGGGTCTGGAAGCAACCACCACTGCCC--------------AAC--------------TGCCACTGCCCAACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5794905 1064 +   6154872 CTCTCCCAAGTGACCTCTTCCCTTCCAAGTGACCTGT----TTCCTCAGGTGACCTCAGCTCTGCCAGGGGACTTCTGCCTTTCCAGGTAACCTCTGCCCTCTTGGTGACATAGTGTGCTCAGGTGACATTAGCCCTCTCAGGTGACCTCAACCCTCCAAGGTGACGTCAGC-CTTGGTGAAGTCTTTCCATGATGACTTTGGCTTTTGCCAGAGGTAAGCTACTGCGGGGGCATAAGCCATATCATGCCATGAGCCACTATCCTGCTCATGTTCCAGAATGAGG-AGACATCTGGGTGCTGGCCCAGCTGCTGGCGAATGAGAGGCTTGCCAAGCATGGTACTCTCCCAGGTGACCTCTGCCCTCTCAGGTGACACAGTCCTCCCATGTGACATTAGCTCACAGTGGACAGCTACCCACGAGGCATCACACAGCCAGGACA-GGGATGGCCACACTGGCTGGGTAATTGTGACTTACAGACAAGGCACCTTCTGTCCCCTGCTCTTTTTGAGCCTCCAGGGTATCCCCTGCTGAGAGTCCCACAGGAGCCTGTGA-CTGGCCAGGG------AC-CCGACACCCCAAGTCAGATGCCTCTTGTCCCCATCAGCAAATGGGATCACAGCTGCCCTGTGACCACCTTCTGCATCCTGGTGTCACAACCTTCTGGCCCTGACCTTATGCAGGGGACTCTTACAACCCTGCTGGTCCTTCCACCTCCCAGCTGGCCACCCTCCCAACCACCCTCCCTGCCCATGGCTAGACCAAGCCCAGATGACAGCTTCTCTCTGTCCTGTGTCCCCTGCCCTGACCCCACATCCAGGAGAAGGCCACACACCCTCCAGCACCCCTGGTCACCCCACCAGCTCCCACCTGTCCTCACTGCTTCAAAGGCAGGCCTGCCCTTCTGGAACCATGGCCGTGGAAGCCACTAAGCAGTGCCTCCAGCCAGGCCCCAGGGG-CATTCCCA---CCCCTCCTCTCCTGGCCGAGACCACATGATGGGGTCACCGGATGGGACAGTGAAAGGCCTTGGGGTCTGGAAGCAACCAccactgccc--------------aac--------------tgccactgcccaact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74494468 1063 + 122973662 CTCTCCCAAGTGACCTCTTCCCTTCCAAGTGACCTGT----TTCCTCAGGTGACCTCAGCTCTGCCAGGGGACTTCTGCCTTTCCAAGTAACCTCTGCCCTCTTGGTGACATAGTGTGCTCAGGTGACATTAGCCCTCTCAGGTGACCTCAACCCTCCAAGGTGACATCAGC-CTTGGTGAAGTCTTTCCATGATGAC--TGGCTTTTGCCAGAGGTAGGCTACTGCGGGGAAATGAGCCATATCATGGCATGAGCCACTATCCTGCTCATGTTCCAGAATGAGG-AGACATCTGGGTGCTGGCCCAGATGCTGGCCAATGAGAGGCTTGCCAAGCATGGTACGCTCCCAGGTGACCTCTGCCCTCTCAGGTGACACAGTCTTCCCATGCAACATTAGCCCACAGTGGACAGCTACCCACGAGGCATCACACAGCCAGGACAGGGGATGGCCACACTGGCTGGGTAATTGTGACTTACAGACAAGGCACCTTCTGTCCCCTGCTCATTTTGAGCCTCCAGGATATCCCCTGCTGAGAGTCCCACAGGAGCCTGTGA-CTGGCCAGGG------AC-CCGACACCCCAAGTCAGAGGCCTCCTGTCCCCATCAGCAAACGGGATCACAGCTGCCCTGTGACCACCTTCTGCATCCTGGTGCCACAACCTTCTGGCCCTGACCTTATGCAGGGGACTCTTACAACCCTGCTGGTCCTTCCACCTCCCAGCTGGCCACCCTCCCAACCACCCTCCCTGCCCATGGCTAGACCAAGCCCAGATGACAGCTTCTCTCTGTCCTGTGTCCCCTGCCCTGACCCCACATCCAGGAGAAGGCCACGCACCCTCCAGCACCCCTGGTCACCCCACCAGCTCCCACCTGTCCTCACTGCTTCAAAGGCAGGCCTGCCCTTCTGGAACCATGGCCCAGGAAGACACTAAGCAGTGCCTCCAGCCAGGCCCCAGGGG-CATTCCCA---CCCCTCCTCTCCTGGCCGAGACCACATGACGGGGTCACTGGATGGGAGAGTGAAAGGCCTTGGGGTCTGGAAGTAACCACCACTGCCC--------------AAC--------------TGCCACTGCCCAACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29968165 1068 + 172585720 ATCTCCCAAGTGACCTCTTCCCTTCCAAGTGACCTGT----TTCCTCCGGTGACCTCAGCTTTTCCAGGAGACTTCTGCCTTTCCAGGTAACCTCTGCCCTCTTGGTGACATAGTGTGCTCAGGTGACATTAGCCATCTCAAGGGACCTTGACCGTCCAAGGTGACGTCAGC-CTTCGTGAAGCCTTTCCATTATGACTTTGGCTCTTGCCGGAGGTAGGCTACTGCAGGGGCATGAGCCATATCATGGCATGAGCCACTATCTTGCTCATGTTCCAGAATGAGG-AGACATCTGGGTGCTGGCCCAGCTGCTGGCCAATGAGAGGCTTGCCAAGCATGGTACTCTCCCAGGTGAACTCTGTCCTCTCAGGTGACACAGTCCTCCCATGTGACATTAGCCCACAGTGGACAGCTACCCACGAGGCATCACACAGCCAGGACAGGGGATGGCCACATTGACTGGGTAATTGTGACTTACAGACAAGGCACCTTCTGTCCCCTACTCATTTTGAGCCTCCAGGATATCCCCTGCTGAGAGTCCCACAGGAGCCTGTGA-CTGGTCAGAG------AC-CCCACACCCCAAGTCAGATGCCTCTTGTCCCCATCAGCAAACGGGATCACAGCTGCCCCGTGACCACCTTCTGCATCCTGGTGCCACAGCCCTCTGGCCCTGACCTTATGCA-GGGACTCTTATCACCCTGCTGGTCCTTCAGCCTCCCAGCTGGccaccctcccaaccacccacccTGCCCATGGCTAGACCAAGCCCAGATGACAGCTTCTCTCTGTCCTGTGTCCCCTGCCCTGACCCCACATCCAGGAGAAGGCCACACATCCTCCAGCACCCCTGGTCACCCCACCAGCTCCCACCTGTCCTCACTGCTTTAAAGGCAGGCCTGCCCTTCTGAAACCATGGCCCAGGAAGCCGCTAAGCAGTGCCTCCAGCCAGGCCCCAGAGGACATTCCCATCGCCCCTCCTCTCCTGGCCAAGACCACACGATGGGGTCACTGGATGGGACAGTGAAAGGCCTTGGAGTCTGGAAGCAACCACCACTGCCC--------------AAC--------------CACCactgcccaacc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29632102 1069 - 170955103 ATCTCCCAAGTGACCTCTTCCCTTCCAAGTGACCTGT----TTCCTCCGGTGACCTCAGCTCTTCCAGGAGACTTCTGCCTTTCCAGGTAACCTCTGCCCTCTTGGTGACATAGTGTGCTCAGGTGACATTAGCCATCTCAAGGGACCTTGACCCTCCAAGGTGACGTCAGC-CTTGGTGAAGCCTTTCCATTATGACTTTGGCTCTTGCCGGAGGTAGGCTACTGCAGGGGCATGAGCCATATCATGGCATGAGCCACTATCTTGCTCATGTTCCAGAATGAGG-AAACATCTGGGTGCTGGCCCAGCTGCTGGCCAATGAGAGGCTTGCCAAGCATGGTACTCTCCCAGGTGAACTCTGTCCTCTCAGGTGACACAGTCCTCCCATGTGACATTAGCCCACAGTGGACAGCTACCCACGAGGCATCACACAGCCAGGACAGGGGATGGCCACATTGACTGGGTAATTGTGACTTACAGACAAGGCACCTTCTGTCCCCTACTCATTTTGAGCCTCCAGGATATCCCCTGCTGAGAGTCCCACAGGAGCCTGTGA-CTGGTCAGAG------AC-CCCACACCCCAAGTCAGATGCCTCTTGTCCCCATCAGCAAACGGGATCACAGCTGCCCCGTGACCACCTTCTGCATCCTGGTGCCACAGCCCTCTGGCCCTGACCTTATGCAGGGGACTCTTATCACCCTGCTGGTCCTTCAGCCTCCCAGCTGGccaccctcccaaccacccacccTGCCCATGGCTAGACCAAGCCCAGATGACAGCTTCTCTCTGTCCTGTGTCCCCTGCCCTGACCCCACATCCAGGAGAAGGCCACACATCCTCCAGCACCCCTGGTCACCCCACCAGCTCCCACCTGTCCTCACTGCTTTAAAGGCAGGCCTGCCCTTCTGAAACCATGGCCCAGGAAGCCGCTAAGCAGTGCCTCCAGCCAGGCCCCAGGGGACATTCCCATCGCCCCTCCTCTCCTGGCCAAGACCACACGATGGGGTCACTGGATGGGACAGTGAAAGGCCTTGGAGTCTGGAAGCAACCACCACTGCCC--------------AAC--------------CACCactgcccaacc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2675530 1075 -   2996164 ATCTCCCAAGTGACCTCTTCCCTTCCAAGTGACCTGT----TTCCTCCGGTGACCTCAGCTCTTCCAGGAGACTTCTGCCTTTCCAGGTAACCTCTGCCCTCTTGGTGACATAGTGCGCTCAGGTGACATTAGCCATCTCAAGGGACCTTGACCCTCCAAGGTGACGTCAGC-CATCGTGAAGCCTTTCCATTATGACTTTGGCTCTTGCCGGAGGTAGGCTACTGCAGGGGCATGAGCCATATCATGGCATGAGCCACTATCTTGCTCATGTTCCAGAATGAGG-AGACATCTGGGTGCTGGCCCAGCTGCTGGCCAATGAGAGGCTTGCCAAGCATGGTACTCTCCCAGGTGAACTCTGTCCTCTCGGGTGACACAGTCCTCCCATGTGACATTAGCCCACAGTGGACAGCTACCCACGAGGCATCACACAGCCAGGACAGGGGATGGCCACATTGACTGGGTAATTGTGACTTACAGACAAGGCACCTTCTGTCCCCTACTCATTTTGAGCCTCCAGGATATCCCCTGCTGAGAGTCCCACAGGAGCCTGTGA-CTGGTCAGAGACCCCAAC-CCCACACCCCAAGTCAGATGCCTCTTGTCCCCATCAGCAAACGGGATCACAGCTGCCCCGTGACCACCTTCTGCATCCTGGTGCCACAGCCCTCTGGCCCTGACCTTATGCAGGGGACTCTTATCACCCTGCTGGTCCTTCAGCCTCCCAGCTGGccaccctcccaaccacccacccTGCCCATGGCTAGACCAAGCCCAGATGACAGCTTCTCTCTGTCCTGTGTCCCCTGCCCTGACCCCACATCCAGGAGAAGGCCACACATCCTCCAGCACCCCTGGTCACCCCACCAGCTCCCACCTGTCCTCACTGCTTTAAAGGCAGGCCTGCCTTTCTGAAACCATGGCCCAGGAAGCCGCTGAGCAGTGCCTCCAGCCAGGCCCCAGGGGACATTCCCATCGCCCCTCCTCTCCTGGCCAAGACCACATGATGGGGTCACTGGATGGAAGAGTGAAAGGCCTTGGAGTCTGGAAGCAACCACCACTGCCC--------------AAC--------------CACCACTGCCCAACC
i macNem1.NW_012011356v1   C 0 I 14
s cerAty1.NW_012002711v1     427589 1071 +    766320 ATCTCCCAAGTGACCTCTTCCCTTCCAAGTGACCTGT----TTCCTCCGGTGTCCTCAGCTCTTCCAGAAGACTTCTGCCTTTCCAGGTAACCTCTGCCCTCTTGGTGACATAGTGTGCTCAGGTGACATTAGCCATCTCAAGGGACCTTGACCCTCCAAGGTGACGTCAGCTCTTGGTGAAGCCTTTCCATTATGACTTTGGCTCTTGCCGGAGGTAGGCTACTGCAGGGGCATGAGCCATATCATGGCATGAGCCACTATCTTGCTCATGTTCCAGAATGAGG-AGACATCTGGGTGCTGGCCCAGCTGCTGGCCAATGAGAAGCTTGCCAAGCATGGTACTCTCCCAGGTGAACTCTGTCCTCTCAGGTGACACAGTCCTCACATGTGACATTAGCCCACAGTGGACAGCTACCCACGAGGCATCACACAGTCAGGACAGGGGATGGCCACACTGACTGGGTAATTGTGACTTACAGACGAGGCACTTTCTGTCTCCTACTCATTTTGAGCCTCCAGGATATCCCCTGCTGAGAGTCCCACAGGAGCCTGTGACCCTGTCAGAG------AC-CCCACACCCCAAGTCAGATGCCTCTTGTCCCCATCAGCAAACGGGATCACAGCTGCCCCGTGACCACCTTCTGCATCCTGGTGCCACAGCTCTCTGGCCCTGACCTTATGCAGGGGACTCTTATCACCCTGCTGGTCCTTCAGCCTCCCAGCTGGCAACCCTCCCAACCACCCACCCTGCCCATGGCTAGACCAAGCCCAGATGACAGCTTCTCTCTGTCCTGTGTCCCCTGCCCTGATCCCACATCCAGGAGAAGGCCACACATCCTCCAGCACCCCTGGTCACCCCACCAGCTCCCACCTGTCCTCACTGCTTTAAAGGCAGGCCTGCCCTTCTGAAACCATGGCCCAGGAAGCCACTAAGCAGTGCCTCCAGCCAGGCCCCAGGGGACATTCCCACCGCCTCTCCTCTCCTGGCTAAGACTACACGATGGGGTCACTGGATGGGAGAGTGAAAGGCCTTGGGGTCTGGAAGCAACCAccactgccc--------------aac--------------caccactacccaacc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28885771 1066 -  71996105 ATCTCCCAAGTGACCTCTTCCCTTCCAAGTGACTTGT----TTCCTCCGGTGACCTCAGCTCTTCCAGGAGACTTCTGCCTTTCCAGGTAACCTCTGCCCTCTTGGTGACATAGTGTGCTCAGGTGACATTAGCCATCTCAAGGGACCTTGACCCTCCAAGGTGACGTCAGC-CTTGGTGAAGCCTTTCCATTATGCCTTTGGCTCTTGCCGGAGGTAGGCTACTGCAGG-----------------GGCATGAGCCACTATCTTGCTCATGTTCCAGAATGAGG-AGACATCTGGGTGCTGGCCCAGCTGCTGGCCAATGAGAGGCTTGCCAAGCATGGTACTCTTCCAGGTGAACTCTGTCCTCTCAGGTGACACAGTCCTCCCATGTGACATTAGCCCACAGTGGACAGCTACCCACGAGGCATCACACAGCCAGGACAGGGGATGGCCACAATGACTGGGTAATTGTGACTTACAGACAAGGCACCTTCTGTCCCCTACTCATTTTGAGCCTCCAGGATATCCCCTGCTGAGAGTCCCACAGGAGCCTGTGA-CTGGTCAGAG------AC-CCCACACCCCAAGTCAGATGCCTCTTGTCCCCATCAGCAAACGGGATCACAGCTGCCCCGTGACCACCTTCTGCATCCTGGTGCCACAGCCCTCTGGCCCTGACCTTATGCAGGGGACTCTTATCACCCTGCTGGTCCTTCAGCCTCCCAGCTGGCCACCCTCCCAACCACCCGCCCTGCCCATGGCTAGACCAAGCCCAGATGACAGCTTCTCTCTGTCCTGTGTCCCCTGCCCTGATCCCACATCCAGGAGAAGGCCACATATCCTCCAGCACCCCTGGTCACCCCACCAGCTCCCACCTGTACTCACTGCTTTAAAGGCAGGCCTGCCCTTCTGAAACCATGGCCCAGGAAGCCGCTAAGCAGTGCCTCCAGTCAGGCCCCAGGGGACATTCCCACCGCCCCTCCTCTCCTGGCCAAGACCACACGATGGGGTCACTGGATGGGAGAGTGAAAGGCCTTGGGGTCTGGAAGCAACCACCACTGCCC--------------AACTGCCACTGCCCAATCGCCACTGCCCAATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      61598 1070 +    290775 ATCTCCCAAGTGACCTCTTCCCTTCCAAGTGACCTGT----TTCCTCCGGTGTTCTCAGCTCTTCCAGAAGACTTCTGCCTTTCCAGGTAACCTCTGCCCTCTTGGTGACATAGTGTGCTCAGGTGACATTAGCCATCTCAAGGGACCTTGACCCTCCAAGGTGACATCAGCTCTTGGTGAAGCCTTTCCATTATGACTTTGGCTCTTGCCGGAGGTAGGCTACTGCAGGGGCATGAGCCATATCATGGCATGAGCCACTATCTTGCTCATGTTCCAGAATGAGG-AGACATCTGGGTGCTGGCCCAGCTGCTGGCCAATGAGAAGCTTGCCAAGCATGGTACTCTCCCAGGTGAACTCTGTCCTCTCAGGTGACACAGTCCTCACATGTGACATTAGCCCACAGTGGACAGCTACCCACGAGGCATCACACAGTCAGGACAGGGGATGGCCACACTGACTGGGTAATTGTGACTTACAGACGAGGCACTTTCTGTCCCCTACTCATTTTGAGCCTCCAGGATATCCCCTGCTGAGAGTCCCACAGGAGCCTGTGA-CTGGTCAGAG------AC-CCCACACCCCAAGTCAGATGCCTCTTGTCCCCATCAGCAAACGGGATCACAGCTGCCCCGTGACCACCTTCTGCATCCTGGTGCCACAGCTCTCTGGCCCTGACCTTATGCAGGGGACTCTTATCACCCTGCTGGTCCTTCAGCCTCCCAGCTGGCAACCCTCCCAACCACCCACCCTGCCCATGGCTAGACCAAGCCCAGATGACAGCTTCTCTCTGTCCTGTGTCCCCTGCCCTGACCCCACATCCAGGAGAAGGCCACACATCCTCCAGCACCCCTGGTCACCCCACCAGCTCCCACCTGTCCTCACTGCTTTAAAGGCAGGCCTGCCCTTCTGAAACCATGGCCCAGGAAGCCACTAAGCAGTGCCTCCAGCCAGGCCCCAGGGGACATTCCCACCGCCTCTCCTCTCCTGGCTAAGACTACACGATGGAGTCACTGGATGGGAGAGTGAAAGGCCTTGGGGTCTGGAAGCAACCAccactgccc--------------aac--------------caccactacccaacc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2491151 1069 -   3067355 ATCTCCCAAGTGACCTCTTCCCTTCCAGGTGACCTGT----TTCCTCAGGTTTCCTCAGCTCTTCCAGGAGACTTCTGCCTTTCCAGGTAACCTCTGCCCTCTTGGTGACATAATGTGCTCAGGTGACATTAGCCATCTCAAGTGACCTTGACCCTCCAAGGTGACGTCAGC-CTTGGTGAAGCCTTCCCATTATGACTTTGGCTCTTGCCGGAGGTAGGCTACTGCAGGGGCATAAGCCATATCATGGCATGAGCCACTATCTTGCTCATGTTCCAGAATGAGG-AGACATCTGGGTGCTGGCCCAGCTGCTGGTCAATGAGAGGCTTGCCAAGCATGGTACTCTCCCAGGTGAACTCCGTCCTCTCAGGTGACACAGTCCTCCCATGTGACATTAGCCCACAGTGGACAGCTACCCACGAGGCATCACACAGCCAGGACAGGGGATGGCCACACTGACTGGGTAACTGTGACTTACAGACAAGGCACCTTCTATCCCCTACTCATTTTGAGCCTCCAGGATATCCCCTGCTAAGAGTCCCACAGGAGCCTGTGA-CTGGTCAGGG------AC-CCCACACCCCAAGTCAGATGCCTCTTGTCCCCATCAGCAAACAGGATCACAGCAGCCCCGTGACCACCTTCTGCATCCTGGTGCCACAGCCCTCTGGCCCTGACCTTATGCAGGGGACTCTTATCACCCTGCTGGTCCTTCAACCTCCCAGCTGGCCACCCTCCCAACCACCCTCCCTGCCCATGGCTAGACCAAGCCCAGATGACAGCTTCTCTCTGTCCTGTGTCCCCTGCCCTGACCCCACATCCAGGAGAAGGCCACACATCCTCCAGCACCCCTGGTCACCCCACCAGCTCCCACCTGTCCTCACTGCTTTAAAGGCAGGCCTGCCCTCCTGAAACCATGGCCCAGGAAGCCGCTAAGCAGTGCCTCCAGCCAGGCCCCAGGGGACATTCCCACCACCCCTCCTCTCCTGGCCAAGACCACATGATGGGGTCACTGGATGGGAGAGTGAAAGGCCTTGGGGTCTGGAAGCAACCACCACTGCCC--------------AAC--------------CACCACTGCCCAACC
i colAng1.NW_012115566v1   C 0 M 1218
s saiBol1.JH378357            63964 1049 -    242197 CTCTCCCAAGTGACTTCTTCCCTTCCAAGTGACCTGTTTCCTTCCTCAGGTGATCTCAGGTCTGCCACAGGACTACTTCCTTGCCAGGTAAACTCTGCCCTCTTGGTGACATAGTGTGCTCAGGCAACATTAGCCCTCTCAGATGACCCCAATCCTCCAAAGTGACCTCAGC-CTTGGTGAAGTCTTTGCATGGTGACTTTGGCTTTTGCAGGAGGTAGGCTACTGCAGGGGCATGAGCCATATCATGGCATGAACCACTGTCCTACTCTTGTTCCAGAATGAGGAAGACATCTAGGTCCTGGCCCAGCTGCTGGCCAATGAGAGGCTTGCCATGCATGGTACTCTCCCAGGTGACCTCTGCCCTCTCAGATGACACACTCCTTCCATGAGATATTAGCCCACAGTGGACAGCTACCCACAAGGCATCACACAGCCAGGACAGGGGATGGCCACAGTGGCTGGGTAATTGTGACTTACAGTTAAGGTACTTTCTGTGCCATATTCATTTTTACCCTCCAGGACATCCCCTGCTTAGAGTCCCACAAAAGCCTGGGG-CTGGTCAGGG------ACCCCCACAACCCAAGTCAGACACCTCTTGTCCCCATCAGAAAAGGGGATCACAGCTTCCCTGTGACCACTTTCCACATCCTGGAGCCATAATCCTCTGGCCTTGACCTTATGCAGATGACTCTTACCACCCTGCTGATCCTTCCACCTCCTAGCTGGCCATGCTCCTGACCACCCTCCCTGTCCATGGCTAGACCAAGCCCAGATGACAGAACCTCTCCGTCCTGTGTCCCTTGGCCTGACTCCACATCCATGAAAAGGCCAAGCACCCTCCAGCACCCCTAGTCACCCCACCAGCTCCCACCTGCCCTCACTGCTTCAAAGGCAGGCCTGCCCTTCTGGAA-----------------------CAGTGCCTCCAGGCAGGCCCCAGGGGACATTCCCA---ACCCTCCTCTCCTGGCTGAGACCACATGATAGGGTCACTGGTTGAGAGAGTGAAAGGCCTTCGGGTCTGGAAGCAACCACCACTACCC--------------AAC--------------TGCTGCTGCCCAACT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      96606 1049 +    106389 CTCTCCCAAGTGACCTCTTCCCTTCCAAGTGACCTGTTTCCTTCCTCAAGTGACCTCAGGTCTGCCAGGGGACTACTGCCTTGCCAGGTAAACTCTGCCCTCTTGGTGACATAGTGTGCTCAGGTGA---TAGCCCTCTCAGGTGACCTCAACCCTCCAAGGTGACCTCAGC-CTTGGTGAAGTCTTTGCATGGTGACTTTGGCTTTTGCAGGAGGTAGGCTACTGCAGGGGCATGAGCCATATCATGGCATGATCCACCATCCTACTCATGTTCCAGAATGAGGAAGACATCTGGGTTCTGGCCCAGCTGCTGGCCAATGAGAGGCTTGCCATGCATGGTACTCTCCCAGGTGACCTCTGCCCTCTCAGATGACACACTCCTTCCATGTGACATTAGCCCACAGTGGA--------CACAAGGCATCACACAGCCAGGATAGGGGATGGCCACAGTGGCTCGGTAACTGTGACTTACAGTTAAGGTACTTTCTGTGCCCTACTCATTTTGACCCTTCAGGACATCCC---CTTAGAGTCCCACAGGAGCTTGGGG-CTGGTCAGGG------ACTCCCACAACCCAAGTCAGATGCCTCTTGTCCCCATCAGCAAAGGGGATCACAGCTTCCCTGTGACCACTTTCTATATCCTGGAGCCATAATCCTCTGGCCTTGACCTTATGCAGATGACTCTAACCACCCTGCTTGTCCTTCCACCTCCCAGCTGGCCATGCTCCCAACCACCTTCCCTGCCCATGGCTAGACCAAGCCCAGATGACAGAATCTCTCCATCCTGTATCCCCTGGCCTGACCCCACATCCATGAGAAGGCCAAGCACCCTCCAGCACCCCTGGTCACCCCACCAGCTCCCACCTGCCCTCATTGCTTCAAAGGCAGGCCTACTCTTCTGGAA-----------------------CAATGCCTCCAGGCAGGCCCCAGGGGACATCTCCA---ACCCTCCTCTCCTGGCCAAGAACACATGATAGGGTCACTGGATGGGAGAGTGAAAGGCCTTCTGGTCTGGAAGCAACCACCTCTGCCCAACTGTCACTGCAGAAC--------------TGCTGCTGCCCAACC
i cebCap1.NW_016108310v1   C 0 C 0
s aotNan1.NW_018509740v1     109028 1028 -    457564 CTCTCCCAAGTGACCTCTTCCCTTCCAAGTGACCTGTTTCCTTCCTCAGGTGA-CTCAGGTCTGCCAGGGGACTACTGCCTTGCCAGGTAAACTCTGCCCTGTTGGTGACATAGTGTGCTCAGGTGA---CAGCCCTCTCAGGTGATCTCAACCCTCCAAGGTGACCTCAGC-CTTAGTGAAGTCTTTGCATGGTGACTTTGGCTTTTGCAGGAGGTAGGCTACTGCAGGGGCATGAGCCATATCATGG------CTACCATCCTACTCATGTTCCAGAATGAGGAAGACATCTGGGTTCTGGCCCAGCTGCTGGCCAATGAGAGGCTTGCCATGCATGGTACTCTCCCAAGTGACCTCTGCCCTCTCAGATGACACACTCCTTCCATGTGACATTAGCCCACAGTGGACAGCTACCCACAAGGCATCACACAGCTAGGACAGTGGATGGCCACAGTGGCTGGGTAATTGTGACTTACAGTTAAGGTACTTTCTGTGCCCTACTCATTTTGACACTGCAGGACATCCCCTGCTTAGAGTCCCACAGGAGCTTGGGG-CTGGTCAGCG------ACCCCCACAACCCAAGTCAGATGCCTCTTGTCCCCATCAGCAAAGGGGATCGCAGCTTCCCTGTGACCACTTTTCACATCCTGGAGCCATAATCCTCTGGCCTTGACCTTATGCAGATGACTCTTACCACCCTGCTGATCCTTCCACCTCCTAGCTGGCCATGCTCCCAACCACCCTCCCTGCCCATGGCTA-ATTAAGCCCAGATGACAGAATCTCTCCATCCTGTGTCCCATGGCCTGACCCCACATCCATGAGAAGGCCAAGCACCCTCCAGCA-CCCTGGTCACCCCACCAGCTCCCACCTACCCTCACTGCTTCAAAGGCAGGCCTGCCCTTTTGGAA-----------------------CAGTGCCTCCAGGCAGGCCCCAGAGGACATTCCCA---ACTCTCCTCTCCTGGCTGAGACCACATGATAGGGTCACTGGATGGGAGAGTGAAAGGCCTTCGGGTCTGGAAGCAACCACCGCTACCC--------------AAC--------------TGCCGC---------
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I

a score=8654258.000000
s hg38.chr6_GL000254v2_alt   794770 1187 +   4827813 GCTGCTGCCCAACTGCCACTGCCCAACTGCCAC--------------TGCCCA--------------GCCTGATGGCTCCACATCTCAGGAGTAGGCTCTGATTCCTTGGGGCCCCAGGAGCCTCTCAGGAGTCTACATCCCAAGATGTTCTAACTTCCAGAGTCTCCAAGCCCATCAAGAGCAAGTTTTGCTAAAAGTGTTCTGAGAGCTTATGAAGCACATGGTGAGTGGTCAGTCCCTCAGCTCTTCCCCAGAGGCCCTGGGTCCCATGGGGTTAGCAGGGACAGGGGAAGCCTGGGGCTGGTGAGAGGCCAACTTCCAGCCAGGGCTTGATCTGGTTTTCAATGGATTCAAAGTTTGGCCTCCTTTTCCTTACCTGGAGGGGACAGAGGCACTGGGACCAGGCCAAGCTCTGGCTGAGCCAGGGCTAGGGGAAGTACATCCACTGGGGGCCCATGCCATGGGGAGGTGTTGGGG-----CACAGCCACCACTGTTCTACCTCTTGGGGAAGGGTCTGCAGTGGGGTCTGGAATACAGAGGTTTTCACGGAAGCCCAGGGGACCCTGAACACTTCTATTCCTTCTATCAGGACAAGGAAGGGT--TGTGCATCCGGCTTTCCACCTTAAACTGGTTTCTATGGTGCTTCATCGATGAGATAAGGATGCAT-AGGAGACCCCAGGCCAGGTACCTCCTTTCCCCACAGTGCTCAGCTCCCCCAGCCCAGGGGTCTGGCTTCCCCAGGAGGACCCAGCTCACCCCCACCCCACAGGAGGCACAGGCAGGTCTCTGCAGGGCACACAAGCCAGGACCTGTATGATGGGAGCTTTAC-ACACCAGACACCAGGGAATTCTGGGCAGACTGGGCCAAGACCCATCTTGGAAGAGCCAAAGGAGCCAGGGAAGCCACAAGCCCTCAGGAAGCCCCTTATTCTGGGAACCACATTTCTGCTGAGATGAGTCCATCCCCATGAAGAGCTGCCGGACCTTGTCTGACCCAGCCTTATGGAAGATTGGGTGGGTCTCTTCCCAAGCAGAGGGAGCCTCAGGAAGTCCAGACTGAGGCTACAGTGGGCCCTGCTCAAGCCACCAGCCCCGAGGTTGGAAAGGCCAGGTCCTCCCACACCTGCTGTTCCCACAGACTTCCTTCATGCTCATCCTGTGGCTCTGGGATGTCTACCTACTGGGAGGTGAGTGTGTGGTGACAACTATGGTATACA
s panTro5.chr6             29757900 1201 + 175400573 GCTACTGCCCAACTGCCACTGCCCAACTGCCAC--------------TGCCCAACTGCCACTGCCCAGCCTGATGGCTCCACATCTCAGGAGTAGGCTCTGATTCCTTGGGGCCCCAGGAGCCTCTCAGGAGTCTACATCCCAAGATGTTCTAACTTCCAGAGTCTCCAAGCCCATCAAGAGCAAGTTTTGCTAAAAGTGTTCTGAGAGCTTATGAAGCACATGGTGAGTGGTCAGTCCCTCAGCTCTTCCCCAGAGGCCCTGGGTCCCATGGGGTTAGCAGGGACAGGGGAAGCCTGGGGCTGGTGAGAGGCCAACTTCCAGCCAGGGCTTGATCTGGTTTTCAATGGATTCAAAGTTTGGCCTTCTTTTCCTTACCTGGAGGGGACAGAGGCACTGGGACCAGGCCAAGCTCTGGCTGAGCCAGGGCTAGGGGAAGTACATCCACTGGGGGCCCATGCCGTGGGGAGGTGTTGGGG-----CACAGCCACCACTGTTCTACCTCTTGGGGAAGGGTCTGCAGTGGGGTCTGGAATACAGAGGTTTTCACGGAAGCCCAGGGGACCCTGAACACTTCTATTCCTTCTATCAGGACAAGGAAGGGT--TGTGCATCCGGCTTTCCACCTTAAACTGGTTTCTATGGTGCTTCATCGATGGGATAAGGATGCAT-AGGAGACCCCAGGCCAGGTACCTTCTTTCCCCACAGTGCTCAGCTCCCCCAGCCCAGGGGTCTGGCTTCCCCAGGAGGACCCAGCTCACCCCCACCCCACAGGAGGCACAGGCAGGTCTCTGCAGGGCACACAAGCCAGGACCTGTATGATGGGAGCATTAC-ACACCAGACACCAGGGAATTCTGGGCAGACTGGGCCAGGACCCATCTTGGAAGAGCCAAAGGAGCCAGGGAAGCCACAAGCCCTCAGGAAGCCCCTTATTCTGGGAGCCACATTTCTGCTGAGATGAGTCCATCCCCATGAAGAGCTGCCGGACCTTGTCTGACCCAGCCTTATGGAAGATTGGGTGGGTCTCTTCCCAAGCAGAGGGAGCCTCAGGAAGTCCAGACTGAGGCTACAGTGGGCCCTGCTCAAGCCACCAGCCCCCAGGTTGGAAAGGCCAGGTCCTCCCACACCTGCTGTTCCCACAGACTTCCTTCATGCTCATCCTGTGGCTCTGGGATGTCTACCTCCTGGGAGGTGAGTGTGTGGTGACAACTATGGTATACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29992523 1201 + 173848474 GCTACTGCCCAACTGCCACTGCCCAACTGCCAC--------------TGCCCAACTGCCACTGCCCAGCCTGATGGCTCCACATCTCAGGAGTAGGCTCTGATTCCTTGGGGCCCCAGGAGCCTCTCAGGAGTCTACATCCCAAGATGTTCTAACTTCCAGAGTCTCCAAGCCCATCAAGAGCAAGTTTTGCTAAAAGTGTTCTGAGAGCTTATGAAGCACATGGTGAGTGGTCAGTCCCTCAGCTCTTCCCCAGAGGCCCTGGGTCCCATGGGGTTAGCAGGGACAGGGGAAGCCTGGGGCTGGTGAGAGGCCAACTTCCAGCCAGGGCTTGATCTGGTTTTCAATGGATTCAAAGTTTGGCCTCCTTTTCCTTACCTGGAGGGGACAGAGGCACTGGGACCAGGCCAAGCTCTGGCTGAGCCAGGGCTACGGGAAGTACATCCACTGGGGGCCCATGCCGTGGGGAGGTGTTGGGG-----CACAGCCACCACTGTTCTACCTCTTGGGGAAGGGTCTGCAGTGGGTTCTGGAATACAGAGGTTTTCACGGAAGCCCAGGGGACCCTGAACACTTCTATTCCTTCTATCAGGACAAGGAAGGGT--TGTGCATCCGGCTTTCCACCTTAAACTGGTTTCTATGGTGCTTCATCGATGGGATAAGGATGCAT-AGGAGACCCCAGGCCAGGTACCTTCTTTCCCCACAGTGCTCAGCTACCCCAGCCCAGGGGTCTGGCTTCCCCAGGAGGACCCAGCTCACCCCCACCCCACAGGAGGCACAGGCAGGTCTCTGCAGGGCACACAAGCCAGGACCTGTATGATGGGAGCATTAC-ACACCAGACACCAGGGAATTCTGGGCAGACTGGGCCAGGACCCATCTTGGAAGAGCCAAAGGAGCCAGGGAAGCCACAAGCCCTCAGGAAGCCCCTTATTCTGGGAGCCACATTTCTGCTGAGATGAGTCCATCCCCATGAAGAGCTGCCGGACCTTGTCTGACCCAGCCTTATGGAAGATTGGGTGGGTCTCTTCCCAAGCAGAGGGAGCCTCAGGAAGTCCAGACTGAGGCTACAGTGGGCCCTGCTCAAGCCACCAGCCCCCAGGTTGGAAAGGCCAGGTCCTCCCACACCTGCTGTTCCCACAGACTTCCTTCATGCTCATCCTGTGGCTCTGGGATGTCTACCTCCTGGGAGGTGAGTGTGTGGTGACAACTATGGTATACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5795969 1187 +   6154872 gccgctgcccaactgctgctgcccaactgccac--------------tgccCA--------------GCCTGATGGCTCCACATCTCAGGAGTAGGCTCTGATTCCTTGGGGCCCCAGGAGCCTCTCAGGAGTCTACATCCCAAGATGTTCTAACTTCCAGAGTCTCCAAGCCCATCAAGAGCAAGTTTTGCTAAAAGTGTTCTGAGAGCTTATGAAGCACATGGTGAGTGGACAGTCCCTCAGCTCTTCCCCAGAGGCCCTGGGTCCCATGGGGTTAGCAGGGACAGGGGAAGCCTGGGGCTGGTGAGAGGCCAACTTCCAGCCAGGGCTTGATCTGGTTTTCAATGGATTCAAAGTTTGGCCTCCTTTTCCTTACCTGGAGGGGACAGAGGCACTGGGACCAAGCCAAGCTCTGGCTGAGCCAGGGCTAGGGGAAGTACATCCACTGGGGACCCATGCCGTGGGGAGGTGTTGGGG-----CACAGCCACCACTGTTCTACCTCTTGGGGAAGGGTCTGCAGTGGGGTCTGGAATACAGAGGTTTTCACGGAAGCCCAGGGGGCCCTGAACACTTCTATTCCTTCTATCAGGACAAGGAAGGGT--TGTGCATCCAGCTTTCCACCTTAAACTGGTTTCTATGGTGCTTCATCGATGGGATAAGGATGCAT-AGGAGACCCCAGGCCAGGTACCTTCTTTCCCCACAGTGCTTAGCTCCCCCAGCCCAGGGGTCTGGCTTCCCCTGGAGGACCCAGCTCACCCCCACCCCACAGGAGGCACAGGCAGGTCTCTGCAGGGCACACAAGCCAGGACCTGTCTGATGGGAGCATTAC-ACACCAGACACCAGGGAATTCTGGGCAGACTGGGCCAGGACCCATCTTGGAAGAGCCAAAGGAGCCAGGGAAGCCACAAGCCCTCAGGAAGCCCCTTATTCTGGGAGCCACATTTCTGCTGAGATGAGTCCATCCCCATGAAGAGCTGCCGGACCTTGTCTGACCCAGCCTTATGGAAGATTGGGTGGGTCTCTTCCCAAGCAGAGGGAGCCTCAGGAAGTCTAGACTAAGGCTACAGTGGGCCCTGCTCAAGCCACCAGCCCCCAGATTGGAAAGGCCAGGTGCTCCCACACCTGCTGTTCCCACAGACTTCCTTCATGCTCATCCTGTGGCTCTGGGATGTCTACCTCCTGGGAGGTGAGTGTGTGGTGACAACTATGGTATACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74495531 1175 + 122973662 CCTGCTGCCCAACTGCCACTGCCCAACTGCCAC--------------TGCCCAACTGCCACTGCCCAGCCTGATGGCTCCACATCTCAGGAGTAGGCTCTGATTCCTTGGGGCCCCAGGAGCCTCTCAGGAGTCTACATCCCAAGATGTTCTAACTTCCAGAGTCTCCAAGCCCATCAAGAGCAAGTTTTGCTAAAAGTGTTCTGAGAGCTTATGAAGCACATGGTGAGTGGACAGTCCCTCAGCTCTTCCCCAGAGGCCCTGCGTCCCATGGGGTTAGCGGGGACAGGGGAAGCCTGGGGCTGGTGAGAGGCCAACTTCCAGCCAGGGCTTGATCTGGTTTTCAGTGGATTCAAAGTTTGGTCTCCTTTTCCTTACCTGGAAGGGACAGAGGCACTGGGACCAGGCCAAGCGCTGGCTGAGCCAGGGCTAAGGGAAGTACAGCCACTGGGGGCCCATGCCATGGGGAGGTGTTGGGG-----CACAGCCACCACTGTTCTACCTCTTGGGGAAGGGTCTGCAGTGGGGCCTGGAATACAGAGGTTTTCACGGAAGCCCAGGGTTCCCTGAACACTTCTACTCCTTCTGTCAGGACAAGGAAGAGT--TGTGCATCCAGCTTTCCACCTTAAACTGGTTTCTGTGGTGCTTCATTGATGGGATAAGGATGCACAAGGAGACCCCAGGCCAGGTACATTCTTTT-----------------CCCCAGCCCAGGGGTCTGGCTTCCCCAGGAGGACCCAGCTCACCCCCACCCCACAGGAGGCACAGGCAGGTCTCTGCGGGGCACACAAGCCAGGACCTGTCTGATGGGAGCATCAC-ACACCAGACACCAGGGAATTCTGGGCGGACCGGGCCAGGACCCATCTTGGAAGAGCCAGAGGAGCCAGAGAAGCCACAAGGCCTCAGGAAGCCCCTTATTCTGGGAGGCACATTTCTGCTGAGATGAGTCCATCCCCATGAAGAGCTGCTGGACTTTGTCTGACCCAGCCTTACGGAAGATGGAGCGGGTCTCTTCCCAAGCAGAGGGAGCCTCAGGAAGTCCAGACTGA----------GGCCCTGCTCAAGCCACCAGCCCCCAAGCTGGAAAGGCCAGGTCCTCCCACACCTGCTGTTCCCACAGACTTCCTTCATGCTCATCCTGAGGCTCTGGGATGTCTACCTCCTGGAAGGTGAGTGTGTGGTGACAACTATGGTATACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29969233 1186 + 172585720 gccactgcccaactgccactgcccaactgccac--------------tgcccaactgccACTACCCAGCCTGATGGCTCCACATCTCAGGAGTAGGCTCTGATTTCTTGGGGCTCCAGGAGCCTCTCAGGAGTCTACATCCCAAGATGTTCTAACTTCCAGAGTCTCCAAGCCCATCAAGAGCAAGTTTTGCTAAAAGTGCTCCAAGAGCTTATGAAGCACATGGTGAGTGGACAGTCCCTCAGCTCTTCCCCAGAGGCCCTGGGTCCCATGGGGTTAG-AGGGACAGCGGAAGCCTGGGGCTGGTGAGAGGCCAACTTCCAGTCAGGGCTTGACCTGGTTTTCAATGGATTCAAAGTTTGGCCTCCTTTTCCTTACCTGGAGGGGACAGAGGCACTGGGACCA-----------GGCTGAGCCAGGGCTAAGGGAAGTACGTCCACTGGGGACCCATGCCGTGGGGAGGTGTTGGCGGAAACCCCAGCCACCACTGTTCTGCCTCTTGGGGAAGGGTCTGCAGTGGGCCCTGGAATACAGAGGTTTTCACAGAAGCCCAGGGGGCCGTGAACAC------TCCTTCTATCAGGACAAGGAAGGGT--TGTGCATCCAGCTTTCCACCTTAAACTGGTTTCTATGGTGCTTCATCGATGGGATAAGGAGGCATAGGGAGACCCCAGGCCAGGTATCTTCTTTCCCTACAGTGCTCAGCTCTCCCAGCCCAGGGCTCTGGCTTCCCCAGGAGGACCCAGCTCACCCTCACCCCACAGGAGGCACAGGCAGGTCTCTGCAGGGCACACAAGCCAGGACCTGCCTGATGGAAGCATCAC-ACACCAGAAACCAGGGATTTCTGGGCGGACTGGGCCAGGACCCATCTTGGAAGAGCCGGAGGAGCCAGGGAAAC---GAGCCCTAAGGAAATCCCTTATTCTGGGAGCCACATTTCTGCTGAGATGAGTCCATCCCCATGAAGAGCCGCCGAACCTTGTCTGACCCAGCCTTATGGAAGCTAGGGTGGGTCTCTTCCCAAGCAGAGGGAGCCTCAGGAAGTCCAGACTGAGGCTACAGTGGGCCCTGCTCAAGCCACCAGCCCCGAGGCTGGAAAGGCCAGGTCCTCCCATACCTGCTGTTCCCGCAGACTTCCTTCATGCTCATCCTGAGGCTCTGGGATGTCTACCTCCTGGAAGGTGAGTGCGTGGTGACAACTATGGTATGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29633171 1189 - 170955103 gccactgcccaactgccactgcccaactgccac--------------tgcccaactgccACTACCCAGCCTGATGGCTCCACATCTCAGGAGTAGGCTCTGATTTCTTGGGGCTCCAGGAGCCTCTCAGGAGTCTACATCCCAAGATGTTCTAACTTCCAGAGTCTCCAAGCCCATCAAGAGCAAGTTTTGCTAAAAGTGCTCCAAGAGCTTATGAAGCACATGGTGAGTGGACAGTCCCTCAGCTCTTCCCCAGAGGCCCTGGGTCCCATGGGGTTAG-AGGGACAGCGGAAGCCTGGGGCTGGTGAGAGGCCAACTTCCAGTCAGGGCTTGACCTGGTTTTCAATGGATTCAAAGTTTGGCCTCCTTTTCCTTACCTGGAGGGGACAGAGGCACTGGGACCA-----------GGCTGAGCCAGGGCTAAGGGAAGTACGTCCACTGGGGACCCATGCCGTGGGGAGGTGTTGGCGGAAACCCCAGCCACCACTGTTCTGCCTCTTGGGGAAGGGTCTGCAGTGGGCCCTGGAATACAGAGGTTTTCACAGAAGCCCAGGGGGCCGTGAACAC------TCCTTCTATCAGGACAAGGAAGGGT--TGTGCATCCAGCTTTCCACCTTAAACTGGTTTCTATGGTGCTTCATCGATGGGATAAGGAGGCATAGGGAGACCCCAGGCCAGGTATCTTCTTTCCCTACAGTGCTCAGCTCTCCCAGCCCAGGGCTCTGGCTTCCCCAGGAGGACCCAGCTCACCCTCACCCCACAGGAGGCACAGGCAGGTCTCTGCAGGGCACACAAGCCAGGACCTGCCTGATGGAAGCATCAC-ACACCAGAAACCAGGGATTTCTGGGCGGACTGGGCCAGGACCCGTCTTGGAAGAGCCGGAGGAGCCAGGGAAACCATGAGCCCTAAGGAAATCCCTTATTCTGGGAGCCACATTTCTGCTGAGATGAGTCCATCCCCATGAAGAGCCGCCGAACCTTGTCTGACCCAGCCTTATGGAAGCTAGGGTGGGTCTCTTCCCAAGCAGAGGGAGCCTCAGGAAGTCCAGACTGAGGCTACAGTGGGCCCTGCTCAAGCCACCAGCCCCGAGGCTGGAAAGGCCAGGTCCTCCCATACCTGCTGTTCCCGCAGACTTCCTTCATGCTCATCCTGAGGCTCTGGGATGTCTACCTCCTGGAAGGTGAGTGCGTGGTGACAACTATGGTATGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2676619 1189 -   2996164 GCCACTGCCCAACTGCCACTGCCCAACTGCCAC--------------TGCCCAACTGCCACTACCCAGCCTGATGGCTCCACATCTCAGGAGTAGGCTCTGATTTCTTGGGGCTCCAGGAGCCTCTCAGGAGTCTACATCCCAAGATGTTCTAACTTCCAGAGTCTCCAAGCCCATCAAGAGCAAGTTTTGCTAAAAGTGGTCCAAGAGCTTATGAAGCACATGGTGAGTGGACAGTCCCTCAGCTCTTCCCCAGAGGCCCTGGGTCCCATGGGGTTAG-AGGGACAGCGGAAGCCTGGGGCTGGTGAGAGGCCAACTTCCAGTCAGGGCTTGACCTGGTTTTCAATGGATTCAAAGTTTGGCCTCCTTTTCCTTACCTGGAGGGGACAGAGGCACTGGGACCA-----------GGCTGAGCCAGGGCTAAGGGAAGTACGTCCACTGGGGACCCATGCCGTGGGGAGGTGTTGGCGGAAACCCCAGCCACCACTGTTCTGCCTCTTGGGGAAGGGTCTGCAGTGGGCCCTGGAATACAGAGGTTTACACAGAAGCCCAGGGGGCCGTGAACAC------TCCTTCTATCAGGACAAGGAAAGGT--TGTGCATCCAGCTTTCCACCTTAAACTGGTTTCTATGGTGCTTCATCGATGGGATAAGGAGGCATAGGGAGACCCCAGGCCAGGTATCTTCTTTCCCTACAGTGCTCAGCTCTCCCAGCCCAGGGCTCTGGCTTCCCCAGGAGGACCCAGCTCACCCTCACCCCACAGGAGGCACAGGCAGGTCTCTGCAGGGCACACAAGCCAGGACCTGCCTGATGGAAGCATCAC-ACACCAGAAACCAGGGATTTCTGGGCGGACTGGGCCAGGACCCGTCTTGGAAGAGCCGGAGGAGCCAGGGAAACCATGAGCCCTAAGGAAATCCCTTATTCTGGGAGCCACATTTCTGCTGAGATGAGTCCATCCCCATGAAGAGCCGCCGAACCTTGTCTGACCCAGCCTTATGGAAGCTAGGGTGGGTCTCTTCCCAAGCAGAGGGAGCCTCAGGAAGTCCAGACTGAGGCTACAGTGGGCCCTGCTCAAGCCACCAGCCCCAAGGCTGGAAAGGCCAGGTCCTCCCATACCTGCTGTTCCCGCAGACTTCCTTCATGCTCATCCTGAGGCTCTGGGATGTCTACCTCCTGGAAGGTGAGTGCGTGGTGACAACTATGGTATGCA
i macNem1.NW_012011356v1   I 14 C 0
s cerAty1.NW_012002711v1     428660 1189 +    766320 gccactgcccaactgccactgcccaactgccac--------------tgcccaactgccACTACCCAGCCTGATGGCTCCACATCTCAAGAGTAGGCTCTGATTCCTTGGGGCTCCAGGAGCCTCTCAGGAGTCTACATCCCAAGATGTTCTAACTTCCAGAGTCTCCAAGCCCATCAAGAGCAAGTTTTGCTAAAAGTGCTCCAAGAGCTTATGAAGCACGTGGTGAGTGGACAGTCCCTCAGCTCTTCCCTAGAGGCCCTGGGTCCCATGGGGTTAG-AGGGACAGTGGAAGCCTGGGGCTGGTGAGAGGCCAACTTCCAGTCAGGGCTTGACCTGGTTTTCAATGGATTCAAAGTTTGGCCTCCTTTTCCTTACCTGGAGGGGACAGAGGCACTGGGACCA-----------GGCTGAGCCAGGGCTAAGGGAAGTATGTCCACTGGGGGCCCATGCCGTGGGGAGGTGTTGGCGGAAACCCCAGCCACCACTGTTCTGCCTCTTGGGGAAGGGTCTGCAGTGGGCCCTGGAATACAGAGGTTTTCACAGAAGCCCAGGGGGCCGTGAACAC------TCCTTCTATCAGGACAAGAAAGGGT--TGTGCATCCAGTTTTCCACCTTAAACTGGTTTCTATGGTGCTTCATCGATGGGATAAGGATGCATAGGGAGACCCCAGGCCAGGTATCTTCTTTCCCTACAGTGCTCAGCTCTCCTAGCCCAGGGCTCTGGCTTCCCCAGGAGGACCCAGCTCACCCTCACCCCACAGGAGGCACAGGCAGGTCTCTGCAGGGCACACAAGCCAGGACCTGCCTGATGGAAGCATCAC-ACACCAGAAACCAGGGATTTCTGGGCGGACTGGGCCGGGACCCGTCTTGGAAGAGCCAGAGGAGCCAGGGAAACCACGAGCCCTAAGGAAATCCCTTATTCTGGGAGCCACATTTCTGCTGAGATGAGTCCATCCCCATGAAGAGCTGCCAAACCTTGTCTGACCCAGCCTTATGGAAGCTAGGGTGGGTCCCTTCCCAAGCAGAGGGAGCCTCAGGAAGTCCAGACTGAGGCTACAGTGGGCCCTGCTCAAGCCACCAGCCCCGAGGCTGGAAAGGCCAGGTCCTGCCATACCTGCTGTTCCCGCAGACTTCCTTCATGCTCGTCCTGAGGCTCTGGGATGTCTACCTCCTGGAAGGTGAGTGCGTGGTGACAACTATGGTATACG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28886837 1184 -  71996105 GCCACTGCCCAACTGCCACTGCCCAACTGCCAC--------------TGCCCAACTGCCACTACCCAGCCTGATGGCTCCACATTTCAGGAGTAGGCTCTGATTCCTTGGGGCTCCAGGAGCCTCTCAGGAGTCTACATCCCAAGATGTTCTAACTTCCAGAGTCTCCAAGCCCATCAAGAGCAAGTTTTGCTAAAAGTGCTCCAAGAGCTTATGAAGCACATGGTGAGTGGACAGTCCCTCAGCTCTTCCCCAGAGGCCCTGGGTCCCATGGGGTTAG-AGGGACAGTGGAAGCCTGGGGCTGGTGAGAGGCCAACTTCCAGTCAGGGCTTGACCTGGTTTTCAATGGATTCAAAGTTTGGCCTCCTTTTCCTTACGTGGAGGGGACAGAGGCACTGGGACCA-----------GGCTGAGCCAGGGCTAAGGGAAGTACATCCACTGGGCGCCCATGCCGTGGGGAGGTGTTGGCGGAAG-CCCAGCCACCACTGTTCTGTGTCTTGGGGAAGGGTCTGCAGTGGGCCCTGGAATACAGAGGTTTTCACAGAAGCCCAGGGGACCCTGAACAC------TCCTTCTATCAGGACCAGGAAGGGT--TGTGCATCCAGCTTTCCACCTTAAACTGGTTTCTATGGTGCTTCATCGATGGGATAAGGATGCATAGGGAGACCCCAGGCCAGGTATCTTCTTTCCCTACAGTGCTCAGCTCTCCCAGCCCAGGGCTCTGGCTTCCCCAGGAGGACCCAGCTCACCCTCACCCCACAGGAGGCACAGGCAGGTCTCTGCAGGGCACACAAGCCAGGACCTGCCTGATGGAAGCATCAC-ACACCAGAAACCAGGGATTTCTGGGCGGACTGGGCCAGGACCCGTCTTGGAAGAGCCGGAGGAGCCAGGGAAACCATGAGCCCTAAGGAAATCCCTTATTCTGGGAGCCACATTTCTGCTGAGATGAGTCCATCCCCATGAAGAGTTGCCGAACCTTGTCTGACCCAGCCTTATGGA----AGGGTGGGTCTCTTCCCAAGCAGAGGGAGCCTCAGGAAGTCCAGACTGAGGCTACAGTGGGCCCTGCTCAAGCCACCAGCCCCGAGGCTGGAAAGGCCAGGTCCTCCCATACCTGCTGTTCCCGCAGACTTCCTTCATGCTCATCCTGAGGCTCTGGGATGTCTACCTCCTGGAAGGTGAGTGCGTGGTGACAACTATGGTATACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      62668 1189 +    290775 gccactgcccaactgccactgcccaactgccac--------------tgcccaactgccACTACCCAGCCTGATGGCTCCACATCTCAAGAGTAGGCTCTGATTCCTTGGGGCTCCAGGAGCCTCTCAGGAGTCTACATCCCAAGATGTTCTAACTTCCAGAGTCTCCAAGCCCATCAAGAGCAAGTTTTGCTAAAAGTGCTCCAAGAGCTTATGAAGCACGTGGTGAGTGGACAGTCCCTCAGCTCTTCCCTAGAGGCCCTGGGTCCCATGGGGTTAG-AGGGACAGCGGAAGCCTGGGGCTGGTGAGAGGCCAACTTCCAGTCAGGGCTTGACCTGGTTTTCAATGGATTCAAAGTTTGGCCTCCTTTTCCTTACCTGGAGGGGACAGAGGCACTGGGACCA-----------GGCTGAGCCAGGGCTAAGGGAAGTATGTCCACTGGGGGCCCATGCCGTGGGGAGGTGTTGGCGGAAACCCCAGCCACCACTGTTCTGCCTCTTGGGGAAGGGTCTGCAGTGGGCCCTGGAATACAGAGGTTTTCACAGAAGCCCAGGGGGCCGTGAACAC------TCCTTCTATCAGGACAAGAAAGGGT--TGTGCATCCAGTTTTCCACCTTAAACTGGTTTCTATGGTGCTTCATCGATGGGATAAGGATGCATAGGGAGACCCCAGGCCAGGTATCTTCTTTCCCTACAGTGCTCAGCTCTCCTAGCCCAGGGCTCTGGCTTCCCCAGGAGGACCCAGCTCACCCTCACCCCACAGGAGGCACAGGCAGGTCTCTGCAGGGCACACAAGCCAGGACCTGCCTGATGGAAGCATCAC-ACACCAGAAACCAGGGATTTCTGGGCGGACTGGGCCAGGACCCGTCTTGGAAGAGCCAGAGGAGCCAGGGAAACCACGAGCCCTAAGGAAATCCCTTATTCTGGGAGCCACATTTCTGCTGAGATGAGTCCATCCCCATGAAGAGCTGCCGAACCTTGTCTGACCCAGCCTTATGGAAGCTAGGGTGGGTCCCTTCCCAAGCAGAGGGAGCCTCAGGAAGTCCAGACTGAGGCTACAGTGGGCCCTGCTCAAGCCACCAGCCCCGAGGCTGGAAAGGCCAGGTCCTGCCATACCTGCTGTTCCCGCAGACTTCCTTCATGCTCGTCCTGAGGCTCTGGGATGTCTACCTCCTGGAAGGTGAGTGCATGGTGACAACTATGGTATACA
i manLeu1.NW_012099233v1   C 0 C 0
s saiBol1.JH378357            65013 1183 -    242197 TCCACTGCCTAACTGCCA-----------------------------TGCCCAACCACCACTACCCAGCCTGATGGCTCCTCATCTCAGTAGTAACCTCTGACTTCCTAGGGCCCCAGGAGCCTCTGAGGATTCTACACCCCAAGATGTTTTAAGTTACAGAGTCTCCAAGTCCATTGAGAACAAGTTTTGCTAGAAGTGCTCTGAGATCTTATGAAGCACATGGCAAGTGGACAGTCCC-CTCCTCTTCCCCAGAGGCCCTGGGTCCCACAAGGTTAG-GCAGACAGGGGAAGCCTGGGGCTGGTGAGAGGCCAACTTCCAGCCAGACCTTGACCTGTTTTTCAGTGGGCTCCAAGTTTGACCTCCTTTTCCTTACCTGGAGGGAACAGAGGTGCTGGGACCAGGCCAAGCTCTGGCTGAGCCAGGGCTAAAGGAAGTATGTCCACTGGGGGCCCATGCAGTGGGGAGGCATTGGGG-AAGCCCCAGCCACCAGTGTTCTGCCTCATAGGGAAGAGTCTTCAGTG------AGAATGCAGAGCTTTTCAGGGAAGCCCAAGGGGCCCTAAACTCTTCTGCTCTTTCTGTCAGGATGAGGAAATGT--TATGCATCCAGCTTTCTACCTTAAACTGCTTTCCCTAGTGCTTCACTGATGGAATAAGGATGCATAAAGGGACCCTAGGCCAGGTATCTTCCTTCCCCACAGTGCTCAGCTCCCCTAGCCCCATGGTCTGGCTTCCTGAGGAAGATCCAGCTCACCCCCAGCCCACAGGAGGCACAGGCAGGTCCCTGCAGGGCACACAAGCCAGGACCTGCCTGATGAGAGCATCACAATGCCAGAAGCCAGGGAATTCTGGGCAGACTGAGCCAGTACTCACCTTGGAAGAGCCAGGGGAACCTGAGAAGCCACAAGCCCTCAGGAAGTCCCTTATTCCGGGAGCCGCATTCCTGCTGAGATAAGTCTACCCCCATGAATTGCTGCCAGACCTTGTCTGAACCAGCCCTATGGGGGATGGAATGGGTCTCTTCCCAAGCAAAGAGAGCCTCAAGAAGTCCAGACTGA-GCTATATTGGACCTTGCTCAAGTCACTGGCCCTGAGGCTGGAAAGGCCAGGTCCTCCCCCACCCGCTGTTCCTGCTGACGTCCTTCAGGCTCGTCCTGAGGCTCTGGGATATCTACCTTCTGAAGGGTGAGTCTGTGGTGACAACTATGGCATACG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      97655 1211 +    106389 ACCACTACCCAACTGCCGCTGCCCAACCACCACTAACCAACCGCTGCTGCCCAACCACCACTACCCAGACTGATGGCTTCACATCTCAGGAGTAACCTCTGACTTCCTAGGGCCCCAGGAGCCTCTGAGGATTCTACATCCCAAGATGTTCTAAGTTACAGAATCTCCAAGCCCATCGAGAGCAAGTTTTGCTAGAAGTGGTCTGAGAGCTTATGAAGCACATGGTAAGTGGAGAGTCCC-CTCCTCTTCCCCAGAGGCCCTGGGTCCCACAAGGTTAG-GCAGACAGGGGAAGCCTGGGGCTGGTGAGAGGCCAACTTCCATCTAGGCCTTGACCTGGTTTTCAATGGGCTCAAAGTTTGACCTCCTTTTCCTTATCTGGAGGAAACAGAGGTGCTGGGACCAGGTCAAGCTCTGGCTGAGCCAGGGCTAAAGGAAGTATGTCCACTGGGGGCCCATGCAGCAGGGAGGCATTGTGG-AAGCCCCAGCCACCAGTGTTCTGCCTCATAGGGAAGGGTCTTCAGTG------GGAATGCAGAGGTTTTCAGGGAAGCCCAAGGCTCCCTGAACTCTTCTGTTCCTTCTGTCAGGACGAGGAAAGGTTGTGTGCGTCCAGCTTTCCACCTTAAACTGCTTTCTGTAGTGCTTCAGTGATAGAATAAGGATGCATAAGGAGACCCCAGGCCAGGTATCTTCCTTCCCCACAGTGCTCAGCTCCCCTAGCCCCATGGTCTGGCTTCCTGAGGAGGATCCAGCTCA-CCCCAGCCAACAGGAAGCACAGGCAGGTCCCTGCAGGGCCTTCAAGACAGGACCTGCCTGATGGGAGCATCAC-ACACCAGAAGCCAGGGAATTCTGGGCAGACTGAGCCAGTACTCACCTTAGAAGAGCCAAGGGAACCAGAGAAGCCACAAGCCCTCAGGAAGCCTCTTATTCCAGGGGCCGCATTCCTGCTGAGATAAGTCCATCCCCATGAATTGCTGCCAGACCTTGTCTGAACCAGCCTTATGGGGGATGGAATGGGTCTCTTCCCAAGCAGAGAGAGCCTCAGGAAGTCCAGACTGA-GCTATATT-GACCTTGCTCAAGCCACTGGCCCTGAGGCTGGAAAGGCCAGGTCCTCCCACACCTGCTGTTCCTGCAGACTTCCTTCAGGCTCATCCTGAGGCTCTGCGATATCTACCTTCTGAAGGGTGAGTCTGTGGTGACAACTATAGCATACG
i cebCap1.NW_016108310v1   C 0 C 0
s aotNan1.NW_018509740v1     110056 1127 -    457564 -----------------------------------------------TGTCCAACCACCACTACCCAGCCTGATGGCTCCACATCTCAGGAGTAACATCTGACTTCCTGGGGCCCCAGGAGCCTCTGAGGATTCTACATCCCAAGACATTCTAAGTTACAGAGTCTCTAAGCCCATCAAGTGCAAGTTTTGCTAGAAGTACTCTGAGAGCTTATGAAGCACATGGTAAGTGGACAGTACT-CTCGTCTTCCCCAGAGGCCCCGGGTCCCACAAGGTTAG-GCAGACAGAGGAAGCCTGGGACTGGTGAGAGGCCAACTTCCAGCCAGGCCTTGACCTGGTTTTCAATGGGCTGAAAGTTTGACCTCTTTTTCCTTACCTGGATGGAACAGAGGTGCTGGGACCTGGCCAAGCTCTGGCTGAGCCAGGGCTAAAGGAAGTATGTCCACTGGGGACCCATGCAATGGGGAGGCATTGGGG-AAGCCCCAGCCATCAGTGTTCTGCCTCATAGGGAAGGGTCTGCAGTG------GGAATGCAGAGGTTTTCAGGGAAGCCCAAGGAGCCCTGAACTCTTCTGCTCCTTCTATCAGGATGAGGAAGGGT--TGTGCATCCAGCTTTCCACCTTAAACTGCTTTCTGTGGCTCTACATTGATGAAATAAGGATGCATAAGGAGACCCCAGGCCAGGTATCTTCCTTCCCCACAGTGCTCAGCTTCCCTAGCCCTGTGGTCTGGCTTCCTGAGGAGAACCCAGCTCACCCCTAGCCCACAGTAAGCATAGGCAGGTCCCTGCAGGGCA--------------------------------------CAGAAGCCAGAGAATTCTGGGCAGACTGAGCCAGTACCCATCTTGGAAGAGCCAGGAGAACCAGGGAAGCCACAAGCCCTCAGGAAGCCCCTTATTCCGGGAGCCACATTCCTGCTGAGATAAGTCCACCCTGATGAATTGCTGCCAGACCTTGTCTGACTCAGCCTTATGGGGGATGGAATGGGTCTGTTCCCAAGCAGAGAGAGCCTCAAGAAGTCCAGATTGA-GCTATAGTGGACTCTGCTCAAGCCACTGGCCCTGAGGCTGGAAAGGCCAGGTCCTCCCACACCCGCTGTTCCCAAAGACTTCCTTCAGGCTCGTCCTGAGGCTCTGGGATGTCTACCTTCTGGAGGGTTAGTCTGTGGTGGCAACTGTGGCATACG
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2492220 1218 -   3067355 M

a score=25944615.000000
s hg38.chr6_GL000254v2_alt   795957 3031 +   4827813 TGGCCTTCACAGC-CACAGAATTAAGTCCCTGGGTGGCCAATGGTGCCCAGAAGGAGCATGCAGGACAGACCCTGGGACCTAT---------------------AGC---CAGGACAGATTCCTGGCTTCTGGTGTGTGATGACCTGAGAGCAGCATCCACACTGTCCAGATGGCTCTCTGCTCCAGCCTGGAGGTAGGGCCAGACCAGGCCTGGTGGGCTGGGCAGGGAGTGGACCCAGGTACCAAACCCACTCCTGACACAACCCAGATGAAAGGCAAGAGTGTGTTGAGCACTTCCCTGCCCAGGCCTTCCTCCAGCTGTGGTTTTCTGTGAACATCTGGACCCCTGGGGCAGCCACAGTAGGATCCAGCACCGCCCAGTGGTGGGTGCCTGGGGCAGGAACAAGGTGCAGACACTGACTCTCCCACAGACCCCTCCCAGCCTCATAGTCACCCTGTCCCTAGAACA-CCCCCTGAAGCTGTTCCTGTTTGGCTTGCAGGAGTTCCTTCAGGACACACTGTCCTAGGCCTGGGCCCTGGAGGAGGACATGGTGATGAGGCACCCTGAGGCCTCCATGGGGGAACTGAGAAGCATGCACTGTGACCTGCACACCCAGGTGGGCTTCAGCACCAAGTCTCCTCCTGTGTCACCCTGCGGGGCAGTAAATAGTGGGAAGTGCCCAGACCTCACCAGCCCTGCTCCCTGGGCC-TtcctccagcccctcctctccctcctcctcTAAGAAGCTTCTGAAACCAGGCTGCCTGAGCC-TAGGGCAAAAGCTGACCTTGGGTTTACTGGACATGCCTCAGAGACA------ATGAGACGTGAGCAAGACTCTTCCAAGCCCCTCCCCTGTACCCTCCTGCTCTCACTCCTGAAAGCCCCAGAAGGACACTGGAGGGGTCAGATCCATCTGTGCAAGCCCACAACCACACCTGTGAGTACCAGCAGCCCTGGAGAGCAGCAGGGGGCCTTCACTCCTGAGCACCCCTCCAAGGGCCTAAAATCAGTGTCAGAGACCCTAAGAGAATCTAGGGAGAGGGCATAGGTGAAACCCTGGCCCAGAGCCAGAATTGATTGCTCAGCTGAGTGTGGGAACAGTCCAGCCCTGGCATGGAGATCCCCCAGAGGAGTGGAGGGTGTCTCATCCACTGTGGAGATAAGCCCCCATATTGCGTGGCAAAGGGGCTAGGTAACAGTTAAGGCCTCATCCATCTGAGCTCTGAATCAAGGCTAAAGCC----CAGGCTAAGCAGCCCTGGGGCAAGAGTGTGAGGCAGGAAGACTGAGTCAGCCTGAACCCTGGGGGCTGTCCCTGGAGTGACTTGAGCTTCCCTGACAGCTTCCCCACTCTAGGCTGCACACACACCTCGCTCTGGGAGTAGCAGCCTGCAGGAGTGTCCTCAGCATTAGACCAGGG---GGACCACACGGGGACCCTGAGGACTGCAGGGACCCAGGTCTGTGGGGTCCAGCCTGGCAAAAGCAAGATGTTCTCAATGGAAAAGCTGACCAAATCTGCTTTCCTTTCAGCCAAACCTGAGCAAGCACCCCCACCACCCAGGCCTCTGCAGATATCCCCCAGCATTGAG-ACCCTCCCCAAGGGGATGGGCTGCTTCTCCCTGGCCCAC-AGCCCAGCTCCAGCAGCCCAT-----------------GGGTATAGCCCTCCTGAAACAGGAGCCTCATCCTCCCTCACCCTCACCTGGCTATGCTGTACCCAAGGCCAAAGCCCAGAGGCATAAGGGAGCTTCTGCAGAGCCCAGGACAGCAGGCTGCTCTCTGGGGGCCCTGGGGACTC---AGAGTGTGGCCAGCCCATCCCCAGCTCAGGATAGACCACAGAGTGCTTGGTGATTCCTGCATTGGAACTCCCTCTCTAAGCTCCCCATGGACCTGGACCTCAGAGGCCTGTGGTTTTCACAGTAGAGCTTGGAGCAGAGATGCTAGGCCCCTATCACTTCCATATGTGTCCT------GGACACCTCTAAGATCATAGGACTGGCCTAGCCCCCAATACCAGACACTGCCCAGCCCCCTGATAGCCCAGAGGTAGGGCCAGAGACAACTCTCCTGCATGTGATGCCTACAGCT----GATCACTCTTGGCAGACAGTGAACATCACGGCCCAGAAGGAGCCAGGGCAGCACTTGGCAAGCTG-CCCCAAAGCCCCAGAGAGCTCCTTAGACATGGAAAGTCAATACTGATGGGGAAGCTGGACACTTGGAGGCCACTGGAGGGAGGGGTGAGCATGGTGTCCCCACAGCCCAGGCCACCCAGCAGCATGCCCTGCATCCATGGTCCCAACCTGTAGGGCAGAACCCCCCTCTCAACGCACAATTCCTAGACCCAGAGGGCCCTAGCCCAGACTCAACCTGAGCCCTGAAAGGGAAGGGGCACCAGGGGTGCCTTGGGGCCTCCAGCAGCAGCCAAGAT----ACACAGGAGATGGAGCCCCCTGTGGCCCTGGCCAGAACTAGTATTTGGCTTAAGGCGGAGC-AAGCCCCCTTGGAGCACTGCGTACATACCCGGGGCCTATGTGTGCCTGGCAAGGCCAAGCTGATGATGTTACCAAGCTCAAACTACCACTGGCCACCT-TGGTGAGGGTGGGGCAGAAACACGTGGACCAGCCACCAACCTCATCCATTCAAGGAAGCAGAAATGGTCAGGCTCCTGCAGGATAAGTGGCCACCACCAGACCACCAATGGGGCAGAGTTCTGAGGCCCAAGCAGATGGCACTGGGGCCCTGCTTCCAGGGTCCACAATCTGCTCCAGGACACAAGACTGAAGAAAACTAAGCAAATGAGAGTCCAGGAGGCTGGATCCCT-CATCTGCCATTCTTGGCAGTTGCATTTTGTGGTCAGAAAAAGTCAGGAAACTTGGCTCTACTCACTGCAGGAGGCTCCAAGGTGGGACCAGAGCTTCCAGCATAGATTCAACAATGCCTAAGAATGCCTCTTCTTGGGGAAAAGGACCCCTTCCTTGGCCTCAAAGCCCCCACTTATTTTGATTAAAGCACAATAAAGTCTTTGTTGTTATGTCCTGCCTGTTTTTGAGTTGCCCAGAGCTCTCTGCA
s panTro5.chr6             29759101 3027 + 175400573 TGGCCTTCACAGC-CACAGAATTAAGTCCCTGGGTGGCCAATGGTGCCCAGAAGGAGCATGCAGGATAGACCCTGGGACCTAT---------------------AGC---CAGGACAGATTCCTGGCTTCTGGTGTGTGATGACCTGAGAGCAGCATCCACACTGTCCACATGGCTCTCTGCTCCAGCCCGGAGGTAGGGCCAGACCAGGCCTGGTGGGCTGGGCAGGGAGTGGACCCAGGTACCAAACCCACTCCTGACACAACCCAGATGAAAGGCAAGAGTGTGTTGAGCACTTCCCTGCCCAGGCCTTCCTCCAGCTGTGGTTTTCTGTGAACATCTGGACCCCTGGGGCAGCCACAGTAGGATCCAGCACCGCCCAGTGGTGGGTGCCTGGGGCAGGAACAAGGTACAGACACTGACTTTCCCACAGACCCCTCCCAGCCTCATAGTCACCCTGTCCCTAGAACA-CCCCCTGAAGCTGTTTCTGTTTGGCCTGCAGGAGTTCCTTCAGGACACACTGTCCTAGGCCTGGGCCCTGGAGGA---CATGGTGATGAGGCGCCCTGAGGCCTCCATGGGGGACCTGAGAAGCATGCACTGTGACCTGCACACCCAGGTGGGCTTCAGCACCAAGTCTCCTCCTGTGTCACCATGCGGGGCAGTAAATAGTGGGAAGTGCCCAGACCTCACCAGCCCTGCTCCCTGGGCC-TtcctccagcccctcctctccctcctcctcTAAGAAGCTTCTGAAACGAGGCTGCCTGAGCC-TAGGGCAAACGCTGACCTTGGGTTTACTGGACATGCCTCAGAGACA------ATGAGACGTGAGCAAGACTCTTCCAAGCCCCTCCCCTGTACCCTCCTGCTCTCACTCCTGAAAGCCCCAGAAGGACACTGGAGGGGTCAGATCCATCTGTGCAAGCCCACAACCACACCTGTGAGTACCAGCAGCCCTGGAGAGCAGCAAGGGGCCTTCACTCCTGAGCACCCCTCCAAGGGCCTAAAATCAGTGTCAGAGACCCTAAGAGAATCTAGGGAGAGGGCATAGGTGAAACCCTGGCCCAGAGCCAGAATTGACTGCTCAGCCGAGTGTGGGAACAGTCCAGCCCTGGCATGGAGATCCCCCAGAGGAGTGGAGGGTGTCTCATCCACTGTGGAGATAAGCCCCCATATTGCGTGGCAAAGGGGCTAGGTAACAGTTAAGGCCCCATCCATCTGAGCTCTGAATCAAGGCTAAAGCC----CAGGCTGAGCAGCCCTGGGGCAAGAGTGTGAGGCAGGAAGACTGAGTCAGCCTGAACCCTGGGGGCTGTCCCTGGAGTGACTTGAGCTTCCCTGACAGCTTCCCCACTCTAGGCTGCACACACACCTCGCTCTGGGAGTAGCAGCCTGCAGGAGTGTCCTCAGCATTAGACCAGGG---GGACCACACGGGGACCCTGAGGACTGCAGGGACCCAGGTCTGTGGGGTCCAGCCTGGCAAAAGCAAGATGTTCTCAATGGAAAAGCTGACCAAATCTGCTTTCCTTTCAGCCAAACCTGAGCAAGCACCCCCACCACCCAGGCCTCTGCAGATATCCCCCAGCATTGAG-ACCCTCCCCAAGGGGATGGGCTGGTTCTCCCTGGCCCAC-AGCCCAGCTCCAGCAGCCCAT-----------------GGGTATAACCCTCCTGAAACAGGAGCCTCATCCTCCCTCACCCTCACCTGGCTATGCTGTACCCAAGGCCAAAGCCCAGAGGCATAAGGGAGCTTCTGCAGAGCCCAGGACAGCAGGCTGCTCTCTGGGGGCCCTGGGGACTC---AGAGTGTGGCCAGCCCATCCCCAGCTCAGGATAGACCACAGAGTGCTTGGTGATTCCTGCATTGGAACTCCCTCTCTAATCTCCCCATGGACCTGGACCTCAGAGGCCTGTGGTTTTCACAGTAGAGCTTGGAGCAGAGATGCTAGGCCCCTGTCACTTCCATATGTGCCCT------GGCCACCTCTAAGATCATAGGGCTGGCCTAGCCCCCAATACCAGACACTGCCCAGCCCCCTGATAGCCCAGAGGTAGGGCCAGAGACAACTCTCCTGCATGTGATGCCTACAGCT----GATCACCCTTGGCAGACAGTGACCATCACAGCCCAGAAGGAGCCAGGGCAGCACTTGGCAAGCTG-CCCCAAAGCCCCAGAGAGCTCCTTAGACATGGAAAGTCAATACTGATGGGGAAGCTGGACACTTGGAGGCCACTGGAGGGAGGGGTGAGCATGGTGTCCCCACAGCCCAGGCCACCCAGCATCATGCCCTGCATCCATGGTCCCAACCTGTAGGGCAGAACTCCCCTCTCAACGCACAATTCCTAGACCCAGAGGGCCCTAGCCCAGACTCAACCTGAGCCCTGAAAGGGAAGGGGCACCAGGGGTGCCTTGGGGCCTCCAGCAGCAGCCAAGAT----ACACAGGAGATGGAGCCCCCTGTGGCCCTGGCCAGAGCTAGTATTTGGCTTAAGGCGGAGC-AAGCCCCCTTGGAGCACTGCGTACATACCCGGGGCCTATGTGTGCCTGGCAAGGCCAAGCTGATGATGTTACCAAGCTCAAACTACCACTGGCCACCT-TGGTGAGGGTGGGGCAGAAACACGTGGACCAGCCACCAACCTCATCCATTCAAGGAAGCAGAAATGCCCAGGCTCCTGCAGGATAAGTGGCCACCACCAGACCACCAATGGGGCAGAGTTCTGAGGCCCAAGCAGATGGCACTGGGGCCCTGCTTCCAGGGTCCACAATCTGCTCCAGGACACAAGACTGAAGAAAACTAAGCAAATGAGAGTCCAGGAGGCTGGATCCCT-CATCTGCCATTCTTGGCAGTTGCATTTTGTGGTCAGAAAAAGTCAGGAAACTTGGCGCTACTCACTGCAGGAGGCTCCAAGGTGGGACCAGAGCTTCCAGC-TAGATTCAGCAATGCCTAAGAATGCCTCTTCTTGGGGAAAAGGACCCCTTCCTTGGCCTCAAAGCCCCCACTTATTTTGATTAAAGCACAATAAAGTCTTTGTTGTTATGTCCTGCCTGTTTTTGAGTTGCCCAGAGCTCTCTGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29993724 3027 + 173848474 TGGCCTTCACAGC-CACAGAATTAAGTCCCTGGGTGGCCAATGGTGCCCAGAAGGAGCATGCAGGACAGACCCTGGGACCTAT---------------------AGC---CAGGACAGATTCCTGGCTTCTGGTGTGTGATGACCTGAGAGCAGCATCCACACTGTCCACATGGCTCTCTGCTCCAGCCCGGAGGTAGGGCCAGACCAGGCCTGGTGGGCTGGGCAGGGAGTGGACCCAGGTACCAAACCCACTCCTGACACAACCCAGATGAAAGGCAAGAGTGTGTTGAGCACTTCCCTGCCCAGGCCTTCCTCCAGCTGTGGTTTTCTGTGAACATCTGGACCCCTGGGGCAGCCACAGTAGGATCCAGCACCGCCCAGTGGTGGGTGCCTGGGGCAGGAACAAGGTACAGACACTGACTTTCCCACAGACCCCTCCCAGCCTCATAGTCACCCTGTCCCTAGAACA-CCCCCTGAAGCTGTTTCTGTTTGGCCTGCAGGAGTTCCTTCAGGACACACTGTCCTAGGCCTGGGCCCTGGAGGA---CATGGTGATGAGGCGCCCTGAGGCCTCCATGGGGGAACTGAGAAGCATGCACTGTGACCTGCACACCCAGGTGGGCTTCAGCACCAAGTCTCCTCCTGTGTCACCTTGCGGGGCAGTAAATAGTGGGAAGTGCCCAGACCTCACCAGCCCTGCTCCCTGGGCC-TtcctccagcccctcctctccctcctcctcTAAGAAGCTTCTGAAACGAGGCTGCCTGAGCC-TAGGGCAAATGCTGACCTTGGGTTTACTGGACATGCCTCAGAGACA------ATGAGACGTGAGCAAGACTCTTCCAAGCCCCTCCCCTGTACCCTCCTGCTCTCACTCCTGAAAGCCCCAGAAGGACACTGGAGGGGTCAGATCCATCTGTGCAAGCCCACAACCACACCTGTGAGTACCAGCAGCCCTGGAGAGCAGCAGGGGGCCTTCACTCCTGAGCACCCCTCCAAGGGCCTAAAATCAGTGTCAGAGACCCTAAGAGAATCTAGGGAGAGGGCATAGGTGAAACCCTGGCCCAGAGCCAGAATTGACTGCTCAGCCGAGTGTGGGAACAGTCCAGCCCTGGCATGGAGATCCCCCAGAGGAGTGGAGGGTGTCTCATCCACTGTGGAGATAAGCCCCCATATTGCGTGGCAAAGGGGCTAGGTAACAGTTAAGGCCCCATCCATCTGAGCTCTGAATCAAGGCTAAAGCC----CAGGCTGAGCAGCCCTGGGGCAAGAGTGTGAGGCAGGAAGACTGAGTCAGCCTGAACCCTGGGGGCTGTCCCTGGAGTGACTTGAGCTTCCCTGACAGCTTCCCCACTCTAGGCTGCACACACACCTCGCTCTGGGAGTAGCAGCCTGCAGGAGTGTCCTCAGCATTAGACCAGGG---GGACCACACGGGGACCCTGAGGACTGCAGGGACCCAGGTCTGTGGGGTCCAGCCTGGCAAAAGCAAGATGTTCTCAATGGAAAAGCTGACCAAATCTGCTTTCCTTTCAGCCAAACCTGAGCAAGCACCCCCACCACCCAGGCCTCTGCAGATATCCCCCAGCATTGAG-ACCCTCCCCAAGGGGATGGGCTGGTTCTCCCTGGCCCAC-AGCCCAGCTCCAGCAGCCCAT-----------------GGGTATAACCCTCCTGAAACAGGAGCCTCATCCTCCCTCACCCTCACCTGGCTATGCTGTACCCAAGGCCAAAGCCCAGAGGCATAAGGGAGCTTCTGCAGAGCCCAGGACAGCAGGCTGCTCTCTGGGGGCCCTGGGGACTC---AGAGTGTGGCCAGCCCATCCCCAGCTCAGGATAGACCACAGAGTGCTTGGTGATTCCTGCATTGGAACTCCCTCTCTAATCTCCCCATGGACCTGGACCTCAGAGGCCTGTGGTTTTCACAGTAGAGCTTGGAGCAGAGATGCTAGGCCCCTGTCACTTCCATATGTGCCCT------GGCCACCTCTAAGATCATAGGACTGGCCTAGCCCCCAATACCAGACACTGCCCAGCCCCCTGATAGCCCAGAGGTAGGGCCAGAGACAACTCTCCTGCATGTGATGCCTACAGCT----GATCACCCTTGGCAGACAGTGACCATCACAGCCCAGAAGGAGCCAGGGCAGCACTTGGCAAGCTG-CCCCAAAGCCCCAGAGAGCTCCTTAGACATGGAAAGTCAATACTGATGGGGAAGCTGGACACTTGGAGGCCACTGGAGGGAGGGGTGAGCATGGTGTCCCCACAGCCCAGGCCACCCAGCATCATGCCCTGCATCCATGGTCCCAACCTGTAGGGCAGAACTCCCCTCTCAACGCACAATTCCTAGACCCAGAGGGCCCTAGCCCAGACTCAACCTGAGCCCTGAAAGGGAAGGGGCACCAGGGGTGCCTTGGGGCCTCCAGCAGCAGCCAAGAT----ACACAGGAGATGGAGCCCCCTATGGCCCTGGCCAGAACTAGTATTTGGCTTAAGGCGGAGC-AAGCCCCCTTGGAGCACTGCGTACATACCCGGGGCCTATGTGTGCCTGGCAAGGCCAAGCTGATGATGTTACCAAGCTCAAAGTACCACTGGCCACCT-TGGTGAGGGTGGGGCAGAAACATGTGGACCAGCCACCAACCTCATCCATTCAAGGAAGCAGAAATGCCCAGGCTCCTGCAGGATAAGTGGCCACCACCAGACCACCAATGGGGCAGAGTTCTGAGGCCCAAGCAGATGGCACTGGGGCCCTGCTTCCAGGGTCCACAATCTGCTCCAGGACACAAGACTGAAGAAAACTAAGCAAATGAGAGTCCAGGAGGCTGGATCCCT-CATCTGCCATTCTTGGCAGTTGCATTTTGTGGTCAGAAAAAGTCAGGAAACTTGGCGCTACTCACTGCAGGAGGCTCCAAGGTGGGACCAGAGCTTCCAGC-TAGATTCAGCAATGCCTAAGAATGCCTCTTCTTGGGGAAAAGGACCCCTTCCTTGGCCTCAAAGCCCCCACTTATTTTGATTAAAGCACAATAAAGTCTTTGTTGTTATGTCCTGCCTGTTTTTGAGTTGCCCAGAGCTCTCTGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5797156 3030 +   6154872 TGGCCTTCACAGC-CACAGAATTAACTCCCTGGGTGGCCAATGGTGCCCAGAAGGAGCATGCAGGACAGACCCTGGGACCTAT---------------------AGC---CAGGACAGATTCCTGGCTTCTGGTGTGTGATGACCTGAGAGCAGCATCCACACTGTCCACATGGCTCTCTGCTCCAGCCCGGAGGTAGGGCCAGACCAGGCCTGGTGGGCTGGGCAGGGAGTGGACCCAGGTACCAAACCCACTCCTGACACAACCCAGATGAAAGGCAAGCGTGTGTTGAGCACTTCCCTGCCCAGGCCTTCCTCCAGCTGTGGTTTTCTGCGACCATCTGGACCCCTGGGGCAGCCACAGTAGGATCCAGCACCGCCCAGTGGTGGGTGCCTGGGGCAGGAACAAGGTGCAGACACTGACTCTCCCACAGACCCCTCCCAGCCTCATAGTCACCCTGTCCCTAGAACA-CCCCCTGAAGCTGTTTCTGTTTGGCCTGCAGGAGTTCCTTCAGGACACACTGTCCTAGGCCTGGGCCCTGGAGGAGGACATGGTGATGAGGCGCCCTGAGGCCTCCATGGGGGAACTGAGAAGCATGCACTGTGACCTGCACACCCAGGTGGGCTTCAGCACCAAGTCTCCTCCTGTGTCACCCTGTGGGGCAGTAAATAGTGGGAAGTGCCCAGACCTCACCAGCCCTGCTCCCTGGGCC-TtcctccagcccctcctctccctcctcctcTAAGAAGCTTCTGAAACCAGGCTGCCTGAGCC-TAGGGCAAAAGCTGACCTTGGGTTTACTGGACTTGCCTCAGAGACA------ATGAGACGTGAGCAAGACTCTTCCAAGCCCCTCCCCTGTACCCTCCTGCTCTCACTCCTGAAAGCCCCAGAAGGACACCGGAGGGGTCAGATCCATCTGTGCAAGCCCACAACCACACCTGTGAGTACCAGCAGCCCTGGAGAGCAGCAGGGGGCCTTCACTCCTGAGCACCCCTCCAAGGGCCTAAAATCAGTGTCAGAGACCCTAAGAGAATCTAGGGAGAGGGCATAGGTGAAACCCTGGCCCAGAGCCAGAATTGATTGCTCAGCCGAGTGTGGGAACAGTCCAGCCCTGGCATGGAGATCCCCCAGAGGCGTGGAGGGTGTCTCATCCACTGTGGAGATAAGCCCCCATATTGTGTGGCAAAGGGGCTAGGTAACAGTTAAGGCCCCATCCATCTGAGCTCTGAATCAAGGCTAAAGCC----CAGGCTAAGCAGCCCTGGGGCAAGAGTGTGAGGCAGGAAGACTGAGTCAGCCTGAACCCTGGGGGCTGTCCCTGGAGTGACTTGAGCTTCCCTGACAGCTTCTCCACTCTAGGCTGCACACACACCTCACTCTGGGAGTAGCAGCCTGCAGGAGTGTCCTCAGCATTAGACCAGGG---GGACCACACGGGGACCCTGAGGACTGCAGGGACCCAGGTCTGTGGGGTCCAGCCTGGTAAAAGCAAGATGTTCTCAATGGAAAAGCTGACCAAATCTGCTTTCCTTTCAGCCAAACCTGAGCAAACACCCCCACCACCCAGGCCTCTGCAGATATACCCCAGCATTGAG-ACCCTCCCCAAGGGGATGGGCTGGTTCTCCCTGGCCCA--AGCCCAGCTCCAGCAGCCCAT-----------------GGGTGTAGCCCTCCTGAAACAGGAGCCTCATCCTCCCTCACCCTCACCTGGCTATGCTGTACCCAAGGCCAAAGCCCAGAGGCATAAGGGAGCTTCTGCAGAGCCCAGGACAGCAGGCTGCTCTCTGGGGGCCCTGGGGACTC---AGAGTGTGGCCAGCCCATCCCCAGCTCAGGATAGACCACAGAGTGCTTGGTGATTCCTGCATTGGAACTCCCTCTCTAAGCTCCCCATGGACCTGGACCTCAGAGGCCTGTGGTTTTCACAGTAGAGCTCGCAGCAGAGATGCTAGGCCCCTGTCACTTCCATATGTGCCCT------GGACACCTCTAAGATCATAGGACTGGCCTAGCCCCCAATACCAGACACTGCCCAGCCCCCTGATAGCCCAGAGGTAGGGCCAGAGACAACTCTCCTGCATGTGATGCCTACAGCT----GATCACCCTTGGCAGACGGTGACCATCATGGCCCAGAAGGAGCCAGGGCAGCACTTGGCAAGCTG-CCCCAAAGCCCCAGAGAGCTCCTTAGACATGGAAAGTCAATACTGATGGGGAAGCTGGACACTTGGAGGCCACTGGAGGGAAGGGTGAGCATGGTGTCCCCACAGCCCAGGCCAGCCAGCAGCATGCCCTGCATCCATAGTCCCAACCTGTAGGGCAGAACCCCCCTCTCAACGCACAATTCCTAGACCCAGAGGGCCCTAGCCCAGACTCAACCTGAGCCCTGAAAGGGAAGGGGCACCAGGGGTGCCTTGGGGCCTCCAGCAGCAGCCAAGAT----ACACAGGAGATGGAGCCCCCTGTGGCCCTGGCCAGAACTAGTATTTGGCTTAAGGCAGAGC-AAGCCCCCTTGGAGCACTGCGTACATACCCGGGGCCTATGTGTGCCTGGCAAGGCCAAGCTGATGATGTTACCAAGCTCAAACTACCACTGGCCACCT-TGGTGAGGGTGGGGCAGAAACACGTGGACCAGCCACCAACCTCATCCATTCAAGGAAGCAGAAATGGCCAGGCTCCTGCAGGATAAGTGGCCACCACCAGACCACCAATGGGGCAGAGTTCTAAGGTCCAAGCAGATGGCACTGGAGCCCTGCTTCCAGGGTCGACAATCTGCTCCAGGACACAAGACTGAAGAAAACTAAGCAAATAAGAGTCCAGGAGGCTGGATCCCT-CATCTGCCATTCTTGGCAGTTGCATTTTGTGGTCAGAAAAAGTCAGGAAACTTGGCGCTACTCACTGCAGGAGGCTCCAAGGTGGGACCAGAGCTTCCAGCATAGATTCAACAACACCTAAGAATGCCTCTTCTTGGGGAAAAGGACCCCTTCCTTGGCCTCAAAGCCCCCACTTATTTTGATTAAAGCACAATAAAGTCTTTGTTGTTATGTCCTGCCTGTTTTTGAGTTGCCCAGAGCTCTCTGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74496706 3036 + 122973662 TGGCCTTCATAGCACACATAATTAAGTCCCTGGGTCACCAATGGTGCCCAGAAGGAGCATGCAGGACAGACCCTGGATCCTAT---------------------AGC---CAGGACAGATCCCTGGCTTCTGGTGTGTGATGACCTGAGGGCAGCATCCACACTGTCCTCATGGCTCTCTGCTCCAGCCCAGAGGTAGGGCCAGACCAGGCCTGGTGGGCCGGGCAGGGAGTGGACCCAGGTACCAAACCCATTCCTGACACAACCCAGATGAAAGGCAAGAGTGTGTTGAGCACTTCCCTGCCCAGGCCTTCCTCCAGCTGTGGTTTTCTGTGAACATCTGGACCTCTGGGGCAGCCACAGTAGGATCCAGTGCTACCCAGTGGAAGGTGCCTGGGGCGGGAACAAGGTGCAGAAACTGACTCTCCCACAGACCCCTCCCAGCCTGATAGTCACCCTGTCCCTAGAACA-CCCCCTGAAGCTGTTCCTGTTTGGCCTGCAGCAGTTCCTTCAGGACACACTGTCCTAGGCCTGGGCCCTGGAGGAGGACGTGGTGATGAGGCACCCTGAGGCCTCCATGGGGGAACTCAGAAGCATGCACTGTGACCTGCACACCCAGGTGGGCTTCAGCACCAAGTCTCCTTCTGCACCTCCCTGTGGGGCATTAAATAGTGGGAAGTGCCCAGACCTCATCAGCCCTGCTCCCTGGGCC-TTCCTCCAGCCCCTCCTCTCTCTCCTCCTCTAAGAAGCTTCTGAAAACAGGCTGTCTGGGCC-TAGGGCAAAAGCTGACCTTGGGTTTACTGGACATGCCTCAGAGACA------ATGAGATGTAAGCAAGACTCTTCCAAGCCCCTCCCCTGTACCCTCCTGCTCTCACTCCTGAAAGCCCCAGAAGGACACTGGAGGGGTCAGATCCATCTGTGCAAGCCCACAACCACACCTGTGAGTACCAGCAGCCCTGGAGAGCAGCAGGGGCCCTTCACTCCTGAGCACCCCTCCAAGGGCCTAAAATCAGTGTCAGAGACCCTAAGAGGATTTGGGGAGAGGGCATAGCTGAAACCCCGGCCCAGAGCCAG-ATTGATTGCTCAGCTGAGTGTGGGAACAGTCCAGCCCTGGCATGGAGATCCCCCAGAGGAGTGGAGGGTGTCTCACCCACTGTGGAGATAAGCCCCCATATTGGGTGGCAAAGGGGCTAGGTAACAGTTAAGGCCCCATCCATCTGAGCCCTGAATCAAGGCTAAAGCC----CAGGCTAAGCAGCCCGGGGGCAAGAGTGTGAGGCAGGAAGCCTGAGTCAGCCTGAACCCTGGGGGCTGTCCCTGGAGTGACTTGAAGTTCCCTGACAGCTTCCCCACTCTAGGATGCACACACACCTTGCTCTGGGAGCAGCAGCCTGCAGGAGTGTCCTCAGCATTAGACCAGGG---GGACCACACGTGGACCCTGAGGACTGCAGGGATCCAGGTCTGTGGAGTCCAGCCTGGCAAAAGCAAGATGTTCTCAGTGGAGAAGCTGACCAAATCTGCTTTCCTTTCAGCCAAACCTGAGCAAACACCCCCAGCACCCAGGCCTCTGCAGACATCCCCCAGCATTGAGAACCCTCCCCAAGGGGATGGGCTGGTTCTCCCTGACCCAC-AGCCCACCTCCAGCAGCCCAT-----------------GGGTGTAGCCCTCCTGAAACAGGAGCCTCATCCTCCCTCACCCTCACCTGGCTATGCTGTACCCAAGGCCAAAGCCCAGAGGCATAAGGGAGCTTCTACAGAGCCCAGGACAGCAGGCTGCTCTCTGGGGGCCCTGGGGACTC---AGAGTGTGGCCAGCCCATCCCCAGCTCAGGATAGACCACAGGGTGCTTGGTGATTCCTGCACTGGAACTCCCTCTCTAAGCTCCCCATGAACCTGGACCTCAGAGGCCTGTGGTTTTCACAGTAGAGCTTGGATCAGAGATGCTAGGCCCCTGTCACTTCCGTATCTGCCCTGATACGGAACACCTCTAAGACCATAGAACTGGCCTAGCCCTCAATACTAGACACTGCCCAACCCCCTGATAGCCCAGAGGTAGAGCTAGAGACAACTCTCCTGCATGTGGTGCCTACATCT----GATCACCCTTGGCAGACGGTGACCATCATGGCCCAGAAGGAGCCAGGGCAGCACTTGGCAAGCTG-CCCCAAAGCCCCAGAGAGCTCCTTAGACATGGAAAGTCAATACTG-TGGGGAAGCTGGACACTTGAAGGCCACTGGAGGGAAGGGTGGGCATGGCATCCCCACAGCCCAGGCCAGCCAGCAGCATGCCCTGCATCCATGGTCCCAACCTGTAGGGCAGAACCTCCCTCTCAACGCACAATTCCCAGACCCAGAGGGCCCTAGCCGAGACTCAACCTGAGCCCTGAAAGGGAAGGGGCACCAAGGGTGCCTTGGGGCCCCCAGCAGCAGCCAAGAT----ACACAAGAGATGGAGCCCCCTGTGGCCCTGGCCAGAACTAGTATTTGGCTTAAGGTGGAGCAAAACCCCCTTGGAGCACTGCCTACATACCCGGGGCCTATGTGTGCTTGGCAAGGCCAAGCTGATGAGGTTACCAAGCTCAAACTACCACTGGCCACCT-TGGTGAGGGTGGAGCAGAAACACGTGGACCAGCCACCAACCTCATCCATTCAAGGAAGCAGAAATGGCCAGGATCCTGCAGGATAAGTGGCCACCATCAGACCACCAATGGGGCAGAGTTCTGAGGCCCAAGCAGATGGCACTGGGGCCCTGCTTCCAGGGTCCACAATCTGCTCCAGGACACAAGACTGAAGAAAACTAAGCAAATGAGAGTCCAGGAGGCTGGATCCCT-CATCTGCCATTCTTGGCAGTTGCATTTTGTGGTCAGAAAAAGTCAGGAAAC--GGTGCTACTCACTGCAGGAGGCTCCAAGGTGGGACCAGAACTTCCAGCATAGATTCAACGATGCCTAAGAAAGCCTCTTTTTGGGGAAAAGGACCCCTTCCTTGGCCTCAAAGCCCCCACTTATTTTGATTAAAGCCCAATAAAGTCTTTGTTGTTATGTGCTGCCTGTTTTTGAGTTGCCCAGAGCTCTCTGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29970419 3045 + 172585720 TGGCCTTCACAGCACACAGAATTAAGTCCCTGGGTGGCCAATGGTGCCCAGAAGGAGCATGCAGGACAGACCCTGGATCCTATCCACCAATGGTGCCCAGAAGGAGCATGCAGGACAGATCCCTGGCTTCTGGTGTGTGATGACCTGAGACCAGCATCCACACTGTCCTCATGGCTCTCTGCTCCAGCCCGGAGGTAGGGCCAGACCAGGCCTGGTTGGCTGGGCAGGGAGTGGACCCAGGTACCAAACCCACTCCTGGCACAACCTAGATGAAAGGCAGGAGTGTGGTGAGCACTTCCCTGCCCAGGCCTTCCTCCAGCTGTGGTTCTCTGTGAACATCTGGACCCCTGGGGCAGCCACAGTAGGATCCAGCACTGCCCAGTGGAGGGTGCCTGGAGCGGGAACAAGGTGCAGAAACTGACTCTCCCACAGACCCTTCCCAGCCTGATAGTCACCCTGTTCCTGGAACA-CCCCCTGAAGCTGTTCCTGTTTGGCCTGCAGGAGTTCCTTCAGGACACACTGTCCTAGGCCTGGGCCCTGGAGGAGGACATGGTGATGAGGCGCCCTGAGGCCTCCATGGGGGAACTGAGAAGCATGCACTGTGACCTGCACACCCAGGCGGGCTTCAGAACCAAGTTTCCTCCTGCGTCACCCTGTGGGGCAGTAAATAGTGGGAAGTGCCTAGACCTCACCAGCCCTGTTCCCTGGGCCTTTCCTCCAGCCCTTTCTCTCTCTCCTCCTCTAAGAAGCTTCTGAAAACAGGCTGACTGAGCC-TAGGGCAAAAGCTGACCTTGGGTTTACTGGACATGCCTCGGAGACA------ATGAGACGTGAGCAAGACTCTTCCAAGCCCCTCCCATGTAGCCTCCTGCTCTCACTCCTGAAAGCCCCAGAAGGACACTGGAGGGCTCAGATCCATCTGTGCAAGCCCACAACCACACCTGTGAGTACCAGCAGCCCTGGAGAGCAGT--GGGGCCTTCACTCCTGAGCACCCCTCCAAGGGCCTAAAATCAGTGTC--AGACCCTAAGAAGATTTAGGGAGAGGGCATATGTGAAACCCTGGCCCAGAGCCAGAATTGAGAGCTCAGCTAAGTGTGGTAACAGTCCAGCCCTGGCATGGAGATCCCCCAGAGGAGTGGAGGGTATCTCACCCACTGTGGAGATAAGCCCCCATATTGGGTGGCAAAGG-----------------GGCCCCATCCATCTGAGCTCTGAATCAAGGCTAAAGCC----CAGGCTAAGCAGCCCTGGGGCAAGGGTGTGAGGCAGGAAGCCTGAGTCAGCCCGAACCCTGGGGGCTGCCCCTGGAGTGACTTGAGGTTCCCTAACA---------------GCTACACACACATCTCGCTCTGGGAGCAGCAGCCTGCAGAAGTGTCCTCAGCGTTAGACCAGGG---GGACCACACGGGGACCCTGAGGACTGCAGGGACCCAAGTCTGTGGGGTCCAGCCTGGCAAAAGCAAGATGTTCTCAGTGGAGAAGCTGACCAAATCTGCTTTCCTTTCAGCCAAACCTGAGCAAGTACCCCCAGCACTCAGGTCTCTGCAGACATCCCCTAGCATTGAG-ACCCTCCCCAAGGGGACGGGCTGGTTCTCCCTGGCCCAC-AGCCCAGCTCCAGCAGCCCATGGGTGTAGCCCTCCTGAGGGTGTAGCCCTCCTGAAACAAGAGCCTCATCCTCCCTCACCCTCGCCTAGCTAGGCTATATGCAAGGCCAAAGCCCAGAGGCATGAGGGAGCTTCTGCAGAGCCCAGGACAGCAGGCTGCTCTCTGGGGGCCCTGGGGACTCAAAAGAGTGTGGCCAGCCCATCCCCAGCTCAGGATAGACCACAGGGTGCTTGGTGATTCCTACATTGGAACTCCCTCTCTAAGCTCCCCATGGACCTGGACCTCAGAGGCCTGTGGTTTTCACAGTACAGCTTGGAGCAGACATGCTAGGCCCCTGTCACTTCCATATCTGCCCT------GGACACCTCTAAGACCACAGGACTGGCCCAGCCCCCAATACGAGACCCTGCCCAGACCCCTGATAGCCCAGAGGTAGGGCCAGAGACAACTTTCCTGCATGTGGTGCCTATATCTGACAGATCACCCTTGGCAGACGGTGACCAGCATGGCCCAGAAGGAGCCAGGGCAGCACCTGGCAAGCTG-CCCCAAAGCCCCAGATAGCTCCTTAGACATGGAAAGTCAATACTGATGGGGAAGCTGGACACTTGGAGGCCACTGGAGGGAAGGGTGAGCATGGCATTCCCACTGCGCAGGCCAGCCAGCAGCATGCCCTGCATCCACGGTCCCAACCTGTACGGCAGAATCCCCCGCTCAATGCACAATTCCCAGACCCAGAGGGCCCTAGCCCAGACTCAACCTGAGCCCTGAAAGGGAAGGGGCACCAGGGGTGCCTTGGGGTCCCCAGCAGCAGCCAAGAT----ACACAGGAGACAGAGTCCCCTGTGGCCCTGGCCAGAACTAGTATTTGGCTTAAGGCAGAGC-AAGCCCCCTTGGAGCACTGCGTACATACCCGGGGCCTACGTGTGCCTAGCAAGGCCAAGCTGATGATGTTACCAAGCTCAAACTACCGCTGTCCACCT-TGGTGAGGGTAGGGCAGAAACAGGCGGACCAGCCACCAACCTCATCCGTTCAAGGAAGCAGAAATGGTCAGGCTCCTGCAGGATAGGTTGTCACCACCAGACCAGCAATGGGGTGGAGTCCTGAGGCCCAAGCAGATGGCACTGGGGCCCTGCTTCCAGGGTCCACAATCTGCTCCAGGACACAGAACTGAAGAAAACCAAGAAAATGAGAGTCCAGGAGGCTGGATCCCT-CATCTGCCATTCTTGGCAGTTGCATTTTCTGGTCAGAAAAAGTCAGGAAACTTGGCACTACTCACCGCAGAAGGCTCCAAGGTGGGACCAGAGCTTCCAGCACAGATTCAGCAATGCCTAAGAAAGCCTCTTCTTGGGGGAAAGAACCCCTTCCTTGGCCTCAAAGCCCCCACTGATTTTGATTACAGCACAGTAAAGTCTTTGTTGTTACGACCTGCCTGTTTTTGAGTTGCCCAGAGCTCTCTGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29634360 3045 - 170955103 TGGCCTTCACAGCACACAGAATTAAGTCCCTGGGTGGCCAATGGTGCCCAGAAGGAGCATGCAGGACAGACCCTGGATCCTATCCACCAATGGTGCCCAGAAGGAGCATGCAGGACAGATCCCTGGCTTCTGGTGTGTGATGACCTGAGACCAGCATCCACACTGTCCTCATGGCTCTCTGCTCCAGCCCGGAGGTAGGGCCAGACCAGGCCTGGTTGGCTGGGCAGGGAGTGGACCCAGGTACCAAACCCACTCCTGGCACAACCTAGATGAAAGGCAGGAGTGTGGTGAGCACTTCCCTGCCCAGGCCTTCCTCCAGCTGTGGTTCTCTGTGAACATCTGGACCCCTGGGGCAGCCACAGTAGGATCCAGCACTGCCCAGTGGAGGGTGCCTGGAGCGGGAACAAGGTGCAGAAACTGACTCTCCCACAGACCCTTCCCAGCCTGATAGTCACCCTGTTCCTGGAACA-CCCCCTGAAGCTGTTCCTGTTTGGCCTGCAGGAGTTCCTTCAGGACACACTGTCCTAGGCCTGGGCCCTGGAGGAGGACATGGTGATGAGGCGCCCTGAGGCCTCCATGGGGGAACTGAGAAGCATGCACTGTGACCTGCACACCCAGGCGGGCTTCAGAACCAAGTTTCCTCCTGCGTCACCCTGTGGGGCAGTAAATAGTGGGAAGTGCCTAGACCTCACCAGCCCTGTTCCCTGGGCCTTTCCTCCAGCCCTTTCTCTCTCTCCTCCTCTAAGAAGCTTCTGAAAACAGGCTGACTGAGCC-TAGGGCAAAAGCTGACCTTGGGTTTACTGGACATGCCTCAGAGACA------ATGAGATGTGAGCAAGACTCTTCCAAGCCCCTCCCATGTAGCCTCCTGCTCTCACTCCTGAAAGCCCCAGAAGGACACTGGAGGGCTCAGATCCATCTGTGCAAGCCCACAACCACACCTGTGAGTACCAGCAGCCCTGGAGAGCAGT--GGGGCCTTCACTCCTGAGCACCCCTCCAAGGGCCTAAAATCAGTGTC--AGACCCTAAGAAGATTTAGGGAGAGGGCATATGTGAAACCCTGGCCCAGAGCCAGAATTGAGAGCTCAGCTAAGTGTGGTAACAGTCCAGCCCTGGCATGGAGATCCCCCAGAGGAGTGGAGGGTATCTCACCCACTGTGGAGATAAGCCCCCATATTGGGTGGCAAAGG-----------------GGCCCCATCCATCTGAGCTCTGAATCAAGGCTAAAGCC----CAGGCTAAGCAGCCCTGGGGCAAGGGTGTGAGGCAGGAAGCCTGAGTCAGCCCGAACCCTGGGGGCTGCCCCTGGAGTGACTTGAGGTTCCCTAACA---------------GCTACACACACATCTCGCTCTGGGAGCAGCAGCCTGCAGAAGTGTCCTCAGCGTTAGACCAGGG---GGACCACACGGGGACCCTGAGGACTGCAGGGACCCAAGTCTGTGGGGTCCAGCCTGGCAAAAGCAAGATGTTCTCAGTGGAGAAGCTGACCAAATCTGCTTTCCTTTCAGCCAAACCTGAGCAAGTACCCCCAGCACTCAGGTCTCTGCAGACATCCCCTAGCATTGAG-ACCCTCCCCAAGGGGACGGGCTGGTTCTCCCTGGCCCAC-AGCCCAGCTCCAGCAGCCCATGGGTGTAGCCCTCCTGAGGGTGTAGCCCTCCTGAAACAAGAGCCTCATCCTCCCTCACCCTCGCCTAGCTAGGCTATATGCAAGGCCAAAGCCCAGAGGCATGAGGGAGCTTCTGCAGAGCCCAGGACAGCAGGCTGCTCTCTGGGGGCCCTGGGGACTCAAAAGAGTGTGGCCAGCCCATCCCCAGCTCAGGATAGACCACAGGGTGCTTGGTGATTCCTACATTGGAACTCCCTCTCTAAGCTCCCCATGGACCTGGACCTCAGAGGCCTGTGGTTTTCACAGTACAGCTTGGAGCAGACATGCTAGGCCCCTGTCACTTCCATATCTGCCCT------GGACACCTCTAAGACCACAGGACTGGCCCAGCCCCCAATACGAGACCCTGCCCAGACCCCTGATAGCCCAGAGGTAGGGCCAGAGACAACTTTCCTGCATGTGGTGCCTATATCTGACAGATCACCCTTGGCAGACGGTGACCAGCATGGCCCAGAAGGAGCCAGGGCAGCACCTGGCAAGCTG-CCCCAAAGCCCCAGATAGCTCCTTAGACATGGAAAGTCAATACTGATGGGGAAGCTGGACACTTGGAGGCCACTGGAGGGAAGGGTGAGCATGGCATTCCCACTGCTCAGGCCAGCCAGCAGCATGCGCTGCATCCACGGTCCCAACCTGTACGGCAGAATCCCCCTCTCAATGCACAATTCCCAGACCCAAAGGGCCCTAGCCCAGACTCAACCTGAGCCCTGAAAGGGAAGGGGCACCAGGGGTGCCTTGGGGTCCCCAGCAGCAGCCAAGAT----ACACAGGAGACAGAGTCCCCTGTGGCCCTGGCCAGAACTAGTATTTGGCTTAAGGCAGAGC-AAGCCCCCTTGGAGCACTGCGTACATACCCGGGGCCTACGTGTGCCTAGCAAGGCCAAGCTGATGATGTTACCAAGCTCAAACTACCGCTGTCCACCT-TGGTGAGGGTAGGGCAGAAACAGGCGGACCAGCCACCAACCTCATCCGTTCAAGGAAGCAGAAATGGTCAGGCTCCTGCAGGATAGGTTGTCACCGCCAGACCAGCAATGGGGTGGAGTCCTGAGGCCCAAGCAGATGGCACTGGGGCCCTGCTTCCAGGGTCCACAATCTGCTCCAGGACACAGAACTGAAGAAAACCAAGAAAATGAGAGTCCAGGAGGCTGGATCCCT-CATCTGCCATTCTTGGCAGTTGCATTTTCTGGTCAGAAAAAGTCAGGAAACTTGGCACTACTCACCGCAGAAGGCTCCAAGGTGGGACCAGAGCTTCCAGCACAGATTCAGCAATGCCTAAGAAAGCCTCTTCTTGGGGGAAAGAACCCCTTCCTTGGCCTCAAAGCCCCCACTGATTTTGATTAAAGCACAGTAAAGTCTTTGTTGTTACGACCTGCCTGTTTTTGAGTTGCCCAGAGCTCTCTGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2677808 3045 -   2996164 TGGCCTTCACTGCACACAGAATTAAGTCCCTGGGTGGCCAATGGTGCCCGGAAGGAGCATGCAGGACAGACCCTGGATCCTATCCACCAATGGTGCCCAGAAGGAGCATGCAGGACAGATCCCTGGCTTCTGGTGTGTGATGACCTGAGACCAGCATCCACACTGTCCTCATGGCTCTCTGCTCCAGCCCGGAGGTAGGGCCAGACCAGGCCTGGTTGGCTGGGCAGGGAGCGGACCCAGGTACCAAACCCACTCCTGGCACAACCTAGATGAAAGGCAGGAGTGTGGTGAGCACTTCCCTGCCCAGGCCTTCCTCCAGCTGTGGTTCTCTGTGAACATCTGGACCCCTGGGGCAGCCACAGTAGGATCCAGCACTGCCCAGTGGAGGGTGCCTGGAGCGGGAACAAGGTGCAGAAACTGACTCTCCCACAGACCCTTCCCAGCCTGATAGTCACCCTGTTCCTGGAACA-CCCCCTGAAGCTGTTCCTGTTTGGCCTGCAGGAGTTCCTTCAGGACACACTGTCCTAGGCCTGGGCCCTGGAGGAGGACATGGTGATGAGGCGCCCTGAGGCCTCCATGGGGGAACTGAGAAGCATGCACTGTGACCTGCACACCCAGGCGGGCTTCAGAACCAAGTTTCCTCCTGCGTCACCCTGTGGGGCAGTAAATAGTGGGAAGTGCCTAGACCTCACCAGCCCTGTTCCCTGGGCCTTTCCTCCAGCCCTTTCTCTCTCTCCTCCTCTAAGAAGCTTCTGAAAACAGGCTGACTGAGCC-TAGGGCAAAAGCTGACCTTGGGTTTACTGGACATGCCTCAGAGACA------ATGAGACATGAGCAAGACTCTTCCAAGCCCCTCCCATGTAGCCTCCTGCTCTCACTCCTGAAAGCCCCAGAAGGACACTGGAGGGCTCAGATCCATCTGTGCAAGCCCACAACCACACCTGTGAGTACCAGCAGCCCTGGAGAGCAGT--GGGGCCTTCACTCCTGAGCACCCCTCCAAGGGCCTAAAATCAGTGTC--AGACCCTAAGAAGATTTAGGGAGAGGGCATATGTGAAACCCTGGCCCAGAGCCAGAATTGAGAGCTCAGCTAAGTGTGGTAACAGTCCAGCCCTGGCATGGAGATCCCCCAGAGGAGTGGAGGGTATCTCACCCACTGTGGAGATAAGCCCCCATATTGGGTGGCAAAGG-----------------GGCCCCATCCATCTGAGCTCTGAATCAAGGCTAAAGCC----CAGGCTAAGCAGCCCTGGGGCAAGGGTGTGAGGCAGGAAGCCTGAGTCAGCCCGAACCCTGGGGGCTGCCCCTGGAGTGACTTGAGGTTCCCTAACA---------------GCTACACACACATCTCGCTCTGGGAGCAGCAGCCTGCAGAAGTGTCCTCAGCGTTAGACTAGGG---GGACCACACGGGGACCCTGAGGACTGCAGGGACCCAAGTCTGTGGGGTCCAGCCTGGCAAAAGCAAGATGTTCTCAGTGGAGAAGCTGACCAAATCTGCTTTCCTTTCAGCCAAACCTGAGCAAGTACCCCCAGCACTCAGGTCTCTGCAGACATCCCCTAGCATTGAG-ACCCTCCCCAAGGGGACGGGCTGGTTCTCCCTGGCCCAC-AGCCTAGCTCCAGCAGCCCATGGGTGTAGCCCTCCTGAGGGTGTAGCCCTCCTGAAACAAGAGCCTCATCCTCCCTCACCCTCGCCTAGCTAGGCTATATGCAAGGCCAAAGCCCAGAGGCATGAGGGAGCTTCTGCAGAGCCCAGGACAGCAGGCTGCTCTCTGGGGGCCCTGGGGACTCAAAAGAGTGTGGCCAGCCCATCCCCAGCTCAGGATAGACCACAGGGTGCTTGGTGATTCCTACATTGGAACTCCCTCTCTAAGCTCCCCATGGACCTGGACCTCAGAGGCCTGTGGTTTTCACAGTACAGCTTGGAGCAGACATGCTAGGCCCCTGTCACTTCCATATCTGCCCT------GGACACCTCTAAGACCACAGGACTGGCCCAGCCCCCAATACGAGACCCTGCCCAGACCCCTGATAGCCCAGAGGTAGGGCCAGAGACAACTTTCCTGCATGTGGTGCCTATATCTGACAGATCACCCTTGGCAGACGGTGACCAGCATGGCCCAGAAGGAGCCAGGGCAGCACCTGGCAAGCTG-CCCCAAAGCCCCAGATAGCTCCTTAGACATGGAAAGTCAATACTGATGGGGAAGCTGGACACTTGGAGGCCACTGGAGGGAAGGGTGAGCATGGCATTCCCACTGCTCAGGCCAGCCAGCAGCATGCCCTGCATCCACGGTCCCAACCTGTACGGCAGAATCCCCCTCTCAATGCACAATTCCCAGACCCAGAGGGCCCTAGCCCAGACTCAACCTGAGCCCTGAAAGGGAAGGGGCACCAGGGGTGCCTTGGGGTCCCCAGCAGCAGCCAAGAT----ACACAGGAGACAGAGTCCCCTGTGGCCCTGGCCAGAACTAGTATTTGGCTTAAGGCAGAGC-AAGCCCCCTTGGAGCACTGCGTACATACCCGGGGCCTACGTGTGCCTAGCAAGGCCAAGCTGATGATGTTACCAAGCTCAAACTACTGCTGTCCACCT-TGGTGAGGGTAGGGCAGAAACAGGCGGACCAGCCACCAACCTCATCCATTCAAGGAAGCAGAAATGGTCAGGCTCCTGCAGGATAGGTTGTCACCACCAGACCAGCAATGGGGTGGAGTCCTGAGGCCCAAGCAGATGGCACTGGGGCCCTGCTTCCAGGGTCCACAATCTGCTCCAGGACACAGAACTGAAGAAAACCAAGAAAATGAGAGTCCAGGAGGCTGGATCCCT-CATCTGCCATTCTTGGCAGTTGCATTTTCTGGTCAGAAAAAGTCAGGAAACTTGGCACTACTCACCGCAGAAGGCTCCAAGGTGGGACCAGAGCTTCCAGCACAGATTCAGCAATGCCTAAGAAAGCCTCTTCTTGGGGGAAAGAACCCCTTCCTTGGCCTCAAAGCCCCCACTGATTTTGATTAAAGCACAGTAAAGTCTTTGTTGTTACGACCTGCCTGTTTCTGAGTTGCCCAGAGCTCTCTGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     429849 2980 +    766320 TGGCCTTCACAGCACACAGAATTAAGTCCCTGGGTGGCCAATG-------------------------------------------------GTGCCCAGAAGGAGCATGCAGGACAGATCCCTGACTTCTGGTGTGTGATGACCTGAGACCAGCATCCACACTGTCCTCATGGCTCTCTGCTCCAGCCCGGAGGTAGGGCCAGACCAGGCCTGGTTGGCTGGGCAGGGAGTGGACCCAGGTACCAAACCCACTCCTGATATAACCTAGATGAAAGGCAGGAGTGTGGTGAGCACTTCCCTGCCCAGGCCTTCCTCCAGCTGTGGTTCTCTGTGAACATCTGGACCCCGGGGGAAGCCACAGTAGGATCCAGCACCGCCCAGTGGAGGGTGCCTGGGGCGGGAAGAAGGTGCAGAAACTGACTCTCCCACAGACCCTTCCCAGCCTGATAGTCACCCTGTTCCTGGAACACCCCCCTGAAGCTGTTCCTGTTTGGCCTGCAGGAGTTCCTTCAGGACACACTGTCCTAGGCCTGGGCCCTGGAGGAGGACATGGTGATGAGGCGCCCTGAGGCCTCCGTGGGGGAACTGAGAAGCATGCACTGTGACCTGCACACCTAGGCGGGCTTCAGAACCAAGTTTCCTCCTGCGTCACCCTGTGGGGCAGTAAATAGTGGGAAGTGCCTAGACCTCACCAGCCCTGTTCCCTGGGCCTTTCCTCTAGCCCTTTCTCTCTCTCCTTCTCTAAGAAGCTTCTGAAAACAGGCTGACTGAGCC-GAGGGCAAAAGCTGACCCTGGGTTTACTGGACATGCCTCAGAGACA------ATGAGATGTGAGCAAGACTCTTCCAAGCCCCTCCCATGTAGCCTCCTGCTCTCACTCCTGAAAGCCCCAGAAGGACACTGGAGGGCTCCGATCCATCTGTGCAAGCCCACAACCACACCTGCGAGTACCAGCAGCCCTGGAGAGCAGC--GGGG-CTTCACTCCTGAGCACCCTTCCGAGGGCCTAAAATCAGTGTCAGAGACCCTAAGAGGATTTAGGGAGAGAGCATATGTGAAACCCTGGCCCAGAGCCAGAATTGAGAGCTCAGCCGAGTGTGGGAACAGTCCAGCCCTGGCATGGAGATCCCCCAGAGGAGTGGAGGGTAACTCACCCACTGTGGAGATAAGCCCCCATATTGGGTGGCAAAGG-----------------GGCCCCATCCATCTGAGCTCTGAATCAAGGCTAAAGCC----CAGGCTAAGCAGCCCTGGGGCAAGGGTGTGAGGCAGGAAGCCTGAGTCAGCCCGAATCCCGGGGGCTGCCCCTGGAGTGACTTGAGGTTCCCTAACA---------------GCTACACACACATCTCGCTCTGGGAGCAGCAGCCTGCAGAAGTGTCCTCAGCGTTAGACCAGGG---GGACCACACGGGGACCCTGAGGACTGCAGGGACCCAAGTCTGTGGGGTCCAGCCTGGCAAAAGCAAGATGTTCTCAGTGGAGAAGCTGACCAAATCTGCTTTCCTTTCAGCCAAACCTGAGCAAGTACCCCCAGTACTCAGGTCTCTGCAGACATCCCCTAGCATTGAG-ACCCTCCCCAAGGGGACGGGCTGGTTCTCCCTGGCCCAG-AGCCCAGCTCCAGCAGCCCAT-----------------GGGTGTAGCCCTCCTGAAACAGGAGCCTCATCCTCCCTCATCCTCGCCTAGCTAGGCTATATGCAAGGCCAAAGCCCAGAGGCATGAGGGAGCTTCTGCAGAGCCCAGGACAGCAGGCTGCTCTCTGGGGGTCCTGGGGACTCAAAAGAGTGTGGCCAGCCCATCCCCAGCTCAGGATAGACCACAGGGTGCTTGGTGATTCCTACATTGGAACTCCCTCTCTAAGCTCCCCATGGACCTGGACCTCAGAGGCCTGTGGTTTTCACAGTACAGCTTGGAGCAGACATGCTAGGCCCCTGTCACTTCCATATCTGCCCT------GGACACCTCTAAGACCACAGGACTGGCCCAGCCCCCAATACGAGACCCTGCCCAGACCCCTGATAGCCCAGAGGTAGGGCCAGAGACAACTTTCCTGCATGTGGTGCCTATATCTGATGGATCACCCTTGGCAGACGGCGACCAGTATGGCCCAGAAGGAGCCAGGGCAGCACCTGGCAAGCTG-CCCCAAAGCCCCAGATAGCTCCTTAGACATGGAAAGTCAATACTGATGGGGAAGCTGGACACTTGGAGGCCACTGGAGGGAAGGATGAGCATGGCATTCCCACTGCTCAGGCCAGCCAGCAGCATGCCCTGCATCCACGGTCCCAACCTGTACGGCAGAATCCCCCTCTCAATGCACAATTCCCAGACCCAGAGGGCCCTAGCCCAGACTCAACCTGAGCCCTGAAAGGGAAGGGGCACC-GGGGTGCCTTGGGGTCCCCAGCAGCAGCCAAGAT----ACACAGGAGACAGAGTCCCCCGTGGCCCTGGCCAGAACTAGTATTTGGCTTAAGGCAGAGC-AAGCCCCCTTGGAGCACTGCGTACATACCCGGGGCCTATGTGTGCCTAGCAAGGCCAAGCTGATGATGTTACCAAGCTCGAACTACCACTGGCCACCT-GGGTGAGGGTAGGGCAGAAACAGGCGGACCAGCCACCAACCTCATCCATTCAAGGAAGCAGAAATGGTCAGGCTCCTGCAGGATAGGTGGCCACCACCAGACCAGCAACGGGGTGGAGTCCTGAGGCCCAAGCAGATGGCACTGGGGCCCTGCTTCCAGGGTCCACAATCTGCTCCAGGACACAGAACTGAAGAAAACCAAGAAAATGAGAGTCCAGGAGGCTGGATCCCT-CATCTGCCGTTCTTGGCAGTTGCATTTTCTGGTCAGAAAAAGTCAGGAAACTTGGCACTACTCACCGCAGGAGGCTCCAAGGTGGGACCAGAGCTTCCAGCACAGATTCAGCAATGCCTAAGAAAGCCTCTTCTTGGGGGAAAGGACCCCTTCCTTGGCCTCAAAGCCCCCACTGATTTTGATTAAAGCACAGTAAAGTCTTTGTTGTTACGACCTGCCTGTTTTTGAGTTGCCCAGAGCTCTCTGCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28888021 3028 -  71996105 TGGCCTTCACAGCACACAGAATTAAGTCCCTGGGTGGCCAATGGTGCCGAGAAGGAGCATGCAGGACAGACCCTGGATCCTATCCACCAATGGTGCCCAGAAGGAGCATGCAGGACAGATCCCTGGCTTCTGGTGTGTGATGACCTGAGACCAGCATCCACACTGTCCTCATGGCTCTCTGCTCCAGCCCGGAGGTAGGGCCAGACCAGGCCTGGTTGGCTGGGCAGGGAGTGGACCCAGGTACCAAATCCACTCCTGACACAACCTAGATGAAAGGCAGGAGTGTGGTGAGCACTTCCCTGCCCAGGCCTTCCTCCAGCTGTGGTTCTCTGTGAACATCTGGACCCCTGGGGCAGCCACAGTAGGATCCAGCACCGCCCAGTGGAGGGTGCCTGGAGCGGGAACAAGGTGCAGAAACTGACTCTCCCACAGACCCTTCCCAGCCTGATAGTCACCCTGTTCCTGGAACA-CCCCCTGAAGCTGTTCCTGTTTGGCCTACAGGAGTTCCTTCAGGACACGCTGTCCTAGGCCTGGGCCCTGGAGGAGGACATGGTGATGAGGCGCCCTGAGGCCTCCATGGGGGAACTGAGAAGCATGCACTGTGACCTGCACACCCAGGCGGGCTTCAGAACCAAGTTTCCTCCTGCGTCACGCTGTGGGGCAGTAAATAGTGGGAAGTGCCTAGACCTCACCAGCCCTGTTCCCAGGGCC-TTCCTCCAGCCCTTTCTCTCTCTCCGCCTCTAAGAAGCTTCTGAAAACAGGCTGACTGAGCC-TAGGGCAAAAGCTGACCTTGGGTTTACTGGACATGCCTCAGAGACA------ATGAGATGTGGGCAAGACTCTTCCAAGCCCCTCCCATGT-GCCTCCTGCTGTCACTCCTGAAAGCCCCAGAAGGACACTGGAGAGCTCAGATCCATCTGTGCAAGCCCACAACCACACCTGTGAGTACCAGCAGCCCTGGAGAGCAGC--GGGGCCTTCACTCCTGAGCACCCCTCCAAGGGCCTAAAATCAGTGTC--AGACCCTAAGAGGATTTAGGGAGAGGGCATATGTGAAACCCTGGCCCAGAGCCAGAATTGAGAGCTCAGCTGAGTGTGGTAACAGTGCAGCCCTGGCATGGAGATCCCCCAGAGGAGTGGAGGGTATCTCACCCACTGTGGAGATAAGCCCCCATATTGGGTGGCAAAGG-----------------GGCCCCATCCATCTGAGCTCTGAATCAAGGCTAAAGCCCAGGCAGGCTAAGCAGCCCTGGGGCAAGGGTGTGAGGCAGGAA-CCTGAGTCAGCCCGAACCCTGGGGGCTGCCCCTGGAGTGACTTGAGGTTCCCTAACA---------------GCTACACACACATCTCGCTCTGGGAGCAGCAGCCTGCAGAAGTGTCCTCAGCGTTAGACCAGGG---GGACCACACGGGGACCCTGAGGACTGCAGGGACCCAAGTCTGTGGAGTCCAGCCTGGCAAAAGCAAGATGTTCTCAGTGGAGAAGCTGACCAAATCTGCTTTCTTTTCAGCCAAACCTGAGCAAGTACCCCCAGCACTCAGGTCTCTGCAGACATCCCCCAGCATTGAG-ACCCTCCCCAAGGGGACGGGCTGGTTCTCCCTGGCCCAC-AGCCCAGCTCCAGCAGCCCAT-----------------GGGTGTAGCCCTCCTGAAATGGGAGCCTCATCCTCCCTCACCCTTGCCTAGCTAGGCTATATGCAAGACCAAAGCCCAG-GGCATGAGGGAGCTTCTGCAGAGCCCAGGACAGCAGGCTGCTCTCTGGGGGCCCTGGGGACTCAAAAGAGTGTGGCCAGTCCATCCCCAGCTCAGGATAGACCACAGGGTGCTTGGTGATTCCTACGTTGGAACTCCCTCTCTAAGCTCCCCATGGACCTGGACCTCAGAGGCCTGTGGTTTTCACAGTACAGCTTGGAGCAGACATGCTAGGCCCCTGTCACTTCCATATCTGCCCT------GGACACCTCTAAGACCACAGGACTGGGCCAGCCCCCAATACGAGACCCTGCCCAGACCCCTGATAGCCCAGAGGTAGGGCCAGAGACAACTTTCCTGCATGTGGTGCCTATATCTGATAGATCACCCTCGGCAGACGGTGACTGGCATGGCCCAGAAGGAGCCAGGGCAGCACCTGGCAAGCTG-CCCCAAAGCCCCAGATAGCTCCTTAGACATGGAAAGTCAATACTGATGGGGAAGCTGGACACTTGGAGGCCACTGGAGGGAAGGGTGAGCATGGCATTCCCACTGCTCAGGCCAGCCAGCAGCATGCCCTGTATCCACGGTCCCAACCTGTACGGCAGAATCCCCCTCTCAATGCACAATTCCCAGACCCAGAGGGCCCTAGCCCAGACTCAACCTGATCCCTGAAAGGGAAGGGGCACCCGGGGTGCCTTGGGGCCCCCAGCAGCAGCCAAGAT----ACACAGGAGACAGAGTCCCCTATGGCCCTGGCCAGAACTAGTATTTGGCTTAAGGCAGAAC-AAACCCCCTTGGGGCACTGCATACATACCCGGGGCCTATGTGTGCCTAGCAAGGCCAAGCTGATGATGTTACCAAACTCAAACGACTGCTGTCCACCT-TAGTGAGGGTAGGGCAGAAACAGGCGGACCAGCCACCAACCTCATCCATTCAAGGAAGCAGAAATGGCCAGGCTCCTGCAGGATAGGTGGCCACCACCAGACCAGCAACGGGGTGGAGTCCTGAGGCCCAAGCAGATGGCACTGGGGCCCTGCTTCCAGGGTCCACAATCTGCTTCAGGACACAGGACTGAAGAAAACCAAGAAAATGAGAGTCCAGGAGGCTGGATCCCT-CATCTGCCATTCTTGGCAGTTGCATTTTCTGGTCAGAAAAAGTCAGGAAACTTGGCACTACTCACCGCAGGAGGCTCCAAGGTGGGACCAGAGCTTCCAGCACAGATTCAGCAATGCCTAAGAAAGCCTCTTCTTGGGGAAAAGGACCCCTTCCTTGGCCTCAAAACCCCCACTTATTTTGATTAAAGCACAGTAAAGTCTTTGTTGTTATGACCTGCCTGTTTCTGAGTTGCCCAGAGCTCTCTGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      63857 2982 +    290775 TGGCCTTCACAGCACACAGAATTAAGTCCCTGGGTGGCCAATG-------------------------------------------------GTGCCCAGAAGGAGCATGCAGGACAGATCCCTGACTTCTGGTGTGTGATGACCTGAGACCAGCATCCACACTGTCCTCATGGCTCTCTGCTCCAGCCCGGAGGTAGGGCCAGACCAGGCCTGGTTGGCTGGGCAGGGAGTGGACCCAGGTACCAAACCCACTCCTGACACAACCTAGATGAAAGGCAGGAGTGTGGTGAGCACTTCCCTGCCCAGGCCTTCCTCCAGCTGTGGTTCTCTGTGAACATCTGGACCCCGGGGGAAGCCACAGTAGGATCCAGCACCGCCCAGTGGAGGGTGCCTGGGGCGGGAAGAAGGTGCAGAAACTGACTCTCCCACAGACCCTTCCCAGCCTGATAGTCACCCTGTTCCTGGAACACCCCCCTGAAGCTGTTCCTGTTTGGCCTGCAGGAGTTCCTTCAGGACACACTGTCCTAGGCCTGGGCCCTGGAGGAGGACATGGTGATGAGGCGCCCTGAGGCCTCCATGGGGGAACTGAGAAGCATGCACTGTGACCTGCACACCTAGGCGGGCTTCAGAACCAAGTTTCCTCCTGCGTCACCCTGTGGGGCAGTAAATAGTGGGAAGTGCCTAGACCTCACCAGCCCTGTTCCCTGGGCCTTTCCTCCAGCCCTTTCTCTCTCTCCTCCTCTAAGAAGCTTCTGAAAACAGGCTGACTGAGCC-TAGGGCAAAAGCTGACCCTGGGTTTACTGGACATGCCTCAGAGACA------ATGAGATGTGAGCAAGACTCTTCCAAGCCCCTCCCATGTAGCCTCCTGCTCTCACTCCTGAAAGCCCCAGAAGGACGCTGGAGGGCTCAGATCCATCTGTGCAAGCCCACAACCACACCTGCGAGTACCAGCAGCCCTGGAGAGCAGC--GGGGCCTTCACTCCTCAGCACCCTTCCAAGGGCCTAAAATCAGTGTCAGAGACCCTAAGAGGATTTAGGGAGAGGGCATATGTGAAACCCTGGCCCAGAGCCAGAATTGAGAGCTCAGCCGAATGTGGGAACAGTCCAGCCCTGGCATGGAGATCCCCCAGAGGAGTGGAGGGTAACTCACCCACTGTGGAGATAAGCCCCCATATTGGGTGGCAAAGG-----------------GGCCCCATCCATCTGAGCTCTGAATCAAGGCTAAAGCC----CAGGCTAAGCAGCCCTGGGGCAAGGGTGTGAGGCAGGAAGCCTGAGTCAGCCCGAACCCTGGGGGCTGCCCCTGGAGTGACTTGAGGTTCCCTAACA---------------GCTACACACACATCTCGCTCTGGGAGCAGCAGCCTGCAGAAGTGTCCTCAGCGTTAGACCAGGG---GGACCACACGGGGACCCTGAGGACTGCAGGGACCCAAGTCTGTGGGGTCCAGCCTGGCAAAAGCAAGATGTTCTCAGTGGAGAAGCTGACCAAATCTGCTTTCCTTTCAGCCAAACCTGAGCAAGTACCCCCAGCACTCAGGTCTCTGCAGACATCCCCTAGCATTGAG-ACCCTCCCCAAGGGGACGGGCTGGTTCTCCCTGGCCCAG-AGCCCAGCTCCAGCAGCCCAT-----------------GGGTGTAGCCCTCCTGAAACAGGAGCCTCATCCTCCCTCATCCTCGCCTAGCTAGGCTATATGCAAGGCCAAAGCCCAGAGGCATGAGGGAGCTTCTGCAGAGCCCAGGACAGCAGGCTGCTCTCTGGGGGCCCTGGGGACTCAAAAGAGTGTGGCCAGCCCATCCCCAGCTCAGGATAGACCACAGGGTGCTTGGTGATTCCTACATTGGAACTCCCTCTCTAAGCTCCCCATGGACCTGGACCTCAGAGGCCTGTGGTTTTCACAGTACAGCTTGGAGCAGACATGCTAGGCCCCTGTCACTTCCATATCTGCCCT------GGACACCTCTAAGACCACAGGACTGGCCCAGCCCCCAATACGAGACCCTGCCCAGACCCCTGATAGCCCAGAGGTAGGGCCAGAGACAACTTTCCTGCATGTGGTGCCTATATCTGATGGATCACCCTTGGCAGACGGTGACCAGCATGGCCCAGAAGGAGCCAGGGCAGCACCTGGCAAGCTG-CCCCAAAGCCCCAGATAGCTCCTTAGACATGGAAAGTCAATACTGATGGGGAAGCTGGACACTTGGAGGCCACTGGAGGGAAGGATGAGCATGGCATTCCCACTGCTCAGACCAGCCAGCAGCATGCCCTGCATCCACGGTCCCAACCTGTACGGCAGAATCCCCCTCTCAATGCACAATTCCCAGACCCAGAGGGCCCTAGCCCAGACTCAACCTGAGCCCTGAAAGGGAAGGGGCACCAGGGGTGCCTTGGGGTCCCCAGCAGCAGCCAAGAT----ACACAGGAGACAGAGTCCCCCATGGCCCTGGCCAGAACTAGTATTTGGCTTAAGGCAGAGC-AAGCCCCCTTGGAGCACTGCGTACATACCCGGGGCCTATGTGTGCCTAGCAAGGCCAAGCTGATGATGTTACCAAGCTCAAACTACCACTGGCCACCT-TGGTGAGGGTAGGGCAGAAACAGGCGGACCAGCCACCAACCTCATCCATTCAAGGAAGCAGAAATGGTCAGGCTCCTGCAGGATAGGTGGCCACCACCAGACCAGCAACGGGGTGGAGTCCTGAGGCCCAAGCAGATGGCACTGGGGCCCTGCTTCCAGGGTCCACAATCTGCTCCAGGACACAGAACTGAAGAAAACCAAGAAAATGAGAGTCCAGGAGGCTGGATCCCT-CATCTGCCATTCTTGGCAGTTGCATTTTCTGGTCAGAAAAAGTCAGGAAACTTGGCACTACTCACCGCAGGAGGCTCCAAGGTGGGACCAGAGCTTCCAGCACAGATTCAGCAATGCCTAAGAAAGCCTCTTCTTGGGGGAAAGGACCCCTTCCTTGGCCTCAAAGCCCCCACTGATTTTGATTAAAGCACAGTAAAGTCTTTGTTGTTACGACCTGCCTGTTTTTGAGTTACCCAGAGCTCTCTGCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2493439 3043 -   3067355 TGGCCTTCACAGCATACAGAATTAAGTTCCTGGGTGGCCAATGGTGCCCAGAAGGAGCATGCAGGACAGACCTTGGATCCTATCCACCAATGGTGCCCAGAAGGAGTATGCAGGACAGATCCCTGGCTTCTGGTGTGTGATGACCTAAGACCAGCATCCACACTGTCCTCATGGCTCTCTGCTCCAGCCCGGAGGTAGGGCTAGACCAGGCCTGGTTGACTGGGCAGGGAGTGGACTCAGGTACCAAACCCACTCCTGACACAACCTAGATGAAAGTCAGGAGAGTGGTGAGCACCTCCCTGCCCAGGCCTTCCTCCAGCTGTGGTTTTCTGTGAACATCTGGACCCCTGGGGCAGCCACAGTAGGATCCAGCACCGCCCAGTGGAAGGTGCCTGGAGCGGGAACAAGGTGCAGAAACTGACTCTCCCACAGACCCTTCCCAGCCTGATAGTCACCCTGTTCCTGGAACA-CCCCCTGAAGCTGTTCCTGTTTGGCCTGCAGGAGTTCCTTCAGGACATGCTGTCCTAGGCCTGGGCCCTGGAGGAGGACATGGTGATGAGGCGCCCTGAGGCCTCCATGGGGAAACTGAGAAGCATGCACTGTGACCTGCACACCCAGGCGGGCTTCAGAACCAAGTTTCCTCCTGCATCACCCTGTGGGGCAGTAAATAGTGGGAAGTGCCTAGACCTCACCAGCCCTGTTCCCTGGGCC-TTCCTCCAGCCCTTCCTCTCCTTCCTCCTCTAAGAAGTTTCTGAAAACAGGCTGACTGAGCC-TAGGGCAAAAGCTGACCTTGAGTTTACTGGACATGCCTCAGAGACA------ATGAGATGTGAGCAAGACTCTTCCAAGCCCCTCCCCTGCAGCCTCCTGCTCTCACTCCTGAAAGCCCCAGAAGGACACTGGAGGGGTCAGATCCTTCTGTGCAAGCCCACAACCACACCTGTGAGTACCAGCAGCCCTGGAGAGGAGC--AGGGCCTTCACTCCTGAGCACCCTCC--AAGGCCTAAAATCAGTGTCAGAGACCCGAAGAGGATTTAGGGAGAGGGCATATGTGAAACTCTGGCCCAGAGCCAGAATTGAGAGCTCAGCTGAGTGTGGGAACAGTCCAGCCCTGGCATGGAGATCCCCTGGAGGAGTGGAGGGTGTCTCACCCACTGTGGAGATAAGCCCCCATACTGGGTGGCAAACG-----------------GGCCCCATCCATCTGAGCTCTGAATCAAGGCTAAAGCC----CAGGCTAAGCAGCCCTGGGGCAAGGCTGTGAGGCAGGAAGCCTGAGTCAGCCGGAACCCTGGGGGCTGTCCCTGGAGTGACTTGAGGTTCCCTAACAGCTTCTCCACTCTAGGCTACACACACATCTCACTCTGGGAGCAGCAGCCTGCAGAAGTGTCCTCAGCATTAGACCAGGGGGAGGACCACACAGGTACCCTGAGGACTGCAGGGACCCAAGTCTGTGGGGTCCAGCCTGGCAAAAGCAAGATGTTCTCAATGGAGAAGCTGACCAAATCTGCTTTCCTTTCAGCCAAACCTGAGCAAGTACCCCCAGCACCCAGGTCTCTGCAGATATCCCCCAGCATTGAA-ACCCTCCCCAAGGGGACTGGCTGGTTCTCCCTGGCCCAC-AGCCCAGCTCCAGCAGCCCAT-----------------GGGTGTAACCCTCCTGAAATGGGAGTCTCATCCTCCCTCGCCCTCACCTAGTTAGGCTATATGCAAGGCCAAAGCCCAGAGGCATGACGGAGCTTCTGCAGAGTCCAGCACAGCAGGCTTCTCTCT-GGGGCCCTGGGGACTC--AAGAGTGTGGCCAGCCCATCCCCAGCTCAGGATAGACCACAGGATGCTTGGTGATTCCTACACTGGAACTCCCTCTCTAAGCTCCCCATGGACCTGGACCTCAGAGGCCTGTGGTTTTCACAGTACAGCTTGGAGCAGAAATGCTAGGCCCCTGTCACTTCCATATCTGCCCT------GGACACCTCTAAGACCACAGGACTGGCCCAGCCCCCAATACAGGACCCTGCCCAGACCCCTGATAGCCCAGAGGTAGGGCCAGGGACAACTTTCCTGCATGTGGTACCTACATCTGATCGATCACCCTTGGCAGACAGTGACCAGCATGGCCCACAAGGAGCCAGGGCAGCACCTGGCAAGCTGCCCCCAAAGCCCCAGATAGCTCCTTAGACATGGAAAGTCAATTCTGAAGGGGAAGCTGGACCCTTGGAGGCCACTGGAGGGAAGGGTTAGCATGGCATTCCCACTGCTCAGGCCAGGCAGCAGCATGCCCTGTATCCACGGTCCCAACCTGCACGGCAGAATCCCCCTCTCAATGCACAATTCCCAGACCCAGAGGGCCCTAGCCCAGACTCAATCTGAGCCCTGAAAGGGAAGGGGCACCAGGGGTGCCTTGGGGCCCCCAGCAGCAGCCAAGAT----ACACAGGAGACAGAGTCCCCTGTGGCCCTGGCCAGAACTAGTATTTGGCTTAAGGCAGAGC-AAGCCCCCTTGGAGCACTGCGTACATACCGGGGTCTTATGTGTGCCTGGCAAGGCCAAGCTGATGATGTTGCCAAGCTCAAACTACCACTGGCCACCT-TGGTGAGGGTAGGGCAGAAACAGGCGGACCAGCCACCAACCTCATCTATTCAAGGAAGCAGAAATGGCCAGGCTCCTGCAGGATAGGTGGCCACCACCAGACCAGCAATGGGGTGGAGTCCTGAGGCCCAAGCAGATGGCATTGGGGCCCTGCTTCCAGGGTCCACAATCTGCTCCAGGACACAGGACTGAAGAAAACTAAGAAAATGAGAGTCCAGGAGGCTGAATCCCT-CATCTGCCATTCTTGGCAGTTGCATTTTGTGGTCAGAAAAAGTCAGGAAACTTGGCACTACTCACTGCAGGAGGCTCCAAGGTGGGACCAGAGCTTCCAGCATGGATTCAGCAATGCCTAAGAAAGCCTCTTCTTGGGGAAAAGGACCCCTTCCTTGGCCTCAAAGCCCCCACTTATTTTGATTAAAGCACAATAAAGTCTTCGTTGTTATGACCTGCCTGTTTTTGAGTTGCCCAGAGCTCTCTGCA
i colAng1.NW_012115566v1   M 1218 C 0
s saiBol1.JH378357            66196 3004 -    242197 TGGCCTTCACAGCACACAGAATTCAGTCCCTGGGTGCCCAATGGCACCCAGAAAGAGCATGTAGGACAGACCCTGGATCCTAC---------------------ACC---CAGAACAGATCCCTGGCTT---GTGTGTGAT-ACCTGAAACCAACATCCACACTGTCCATATGGCCCTCTGCTCTAGCCCAGAGGTGGAGCCAGACCAGGCCTGGAGGGCTGGCTAGGGAGTGGACCCAGGCACCAAACCCACTCCTGACATAACCCAGATGAAAGGCAGGAGTGTGGTAAGCACTTCTCTGCCCAGACCTTCCTCCAGCTGTGGTTTTCTGTGCATAACCGGAACCCTGGGACAACCACAGTAGGCTCCAGCACCGCCTAGTGGAAGGTACCAGGGATGGGAACAAGGTGCAGAAACTGACCCTCCCACACACCCCTCACAGCTGGATAGTCAGCCTGTCCCTAGAACA-CCCCCTGAAGCTGTTCCTGTTTGGCCTGCAGGAGTTCCTTTAGGACATGCTGTCCTAGGCCT-AACCCTGGAGGAGGACATAGTAATGAGGCACCCTGAGGCCTCCATGGGGGAACCGAGAAGCATGCCCTGTGACCTGCACCCCCAGGTGGCCTTTAGCACCAGGTCTTCTCCTATGTCACCCTCTGAGGCAGCAAATAGTGACAGGTGCCCAGACCTCACCAGCCCTACTCTCTGGGCC-TTGTCCCAGCCCTTCATCTCCCTCTTCCTCTAAGAAGCTTCTGAAAACAAGCTGCCTGGGCCCTAGGGCAAAAGCTGACCTTGGGTTTACTACACATGCCTCAGAGACAAGGTGTATGGGATATGAGCAAGA-----------CCCTCCCCTGTACCCTGCTATTCTCACCCATGAAAACCCCAGAAGGACACTGGAGGGGTGGAACCCATCTGTGCAAGCCCACAACCACACCTGTGAGTACCAGCAGCACCAGAGAGCACCAGAGGCTCTTCACTCCTGAGCACCCCTCCAAGGGCCTAAAATCAGTGTCTGAAACATTGAGAGCACTTGGGGAGAGGGCATAGATGAAACCCTGACCCAGAGCCAGAATTGAGAGCTCAACTGAGTGTGGGAACAGTCTAGCCCTGGGATGGAAATCCCCTAGAGGGGTAGAGGGTGTCTCACTCACTGTGGAGATAAACCCCCATGTCAGGTGGCAAAGCAAGTAGGTAACAGTTAAGGCCCCATCTATCTGAGTTCTGAATCCGGGCTAAATCC----CAGATTAAGTAACCCTGGGATAAAAGTGTGAGGCAGGAAGCCTGAGCCAGCC----CCTGGTGGGCTGACCCAGGATTGACTTGAGGTTCCTTAACAGCTTCCCCACCCCAGGCTGCACATACACCTCACCCTGGGATCAGCAGCCTGCAGAGTTGTCCTCAGCGTTAGACCATGG---GAACCACATGGGGACCCTAAGGACTCCAGGGACCCAGGTATAAGGGGCCCAGCCTGGCAAAAGCAGGATGTTCTCAGTGGAGAAGCTAACCAAATCTACTTTTCTTTCAGCCAAACCTGAGCAAGTGCCCCTAGCACCCAGGCCTCTGTGGGCATCCCCCAGCATTGAG-ACCTTCCCCAAGGGGACAGTCTGGTCCTCCTTGGGCCACAAGTCCAGCTCCAGCAGCCCAT-----------------GGGTGTAGCCCTCCTAAAACGGGAACCTCGTCTTCCCTCACCTTTGCCTGGCTAGGCTGTCCCCAAGGCCAAAGCCCAGAGACACGAGGGAGCTTCTGCAGAGCCCAGGATAGTAGGCTGCTCTCTGGGGGCCCTGGGGACAC---AGAATGTGGCCAGTCTGTCCCCAGCTCAGG-------ACAGGATGCTTGGTGATTCCTGCGTTGGAACTCCCTCTCAAAGCTCCCCATGGATCTGGACCTCAGAGGCCTGTGGTTTTCACAGTACAGCTTGGAGCAGAGAAGCTAGGCCCCTGTCACTTCCATATTTGCCCT------GGACATCTCTAAGACCATGGGACTGGTCCAATCCCCAATACCAG-CCCTGCTCAGTCCCCTGATAGCCCAGTGGTAGGGCCAAAGACAACTCTCCTGAATGTGGTGCCTGCATCC----GATCA-------TGGAAGGTGACTAGCATGGCCCAGAAGGAGCTAGGGCAGCACCTGGAAAGCTG-CCCCAAAGCCCCAGACAGTTCCTTAGGCATGGAAAGTCAATCCCGATGAGGAAGCTGGACACTTGGAGGCCACTGGAGAGAAGGGTGAGCATGGCATCCTCACAGCCCAGGTCAGCCAGCAGCTTGCCCTACATCCACAGTACCAACCTGTAAGGCAGAACTGACCTCTCAAGGCACAATTTCCAGACCCAGAGGGCCCTAGCCCAGACACAACCTGAGCCCTGAAAGAGAAGGGGCACCAGAAGTGCCTTGGGGCCCCCAGCAGTAGCCAAGGTAAGCACACAAGAGACTGAGTCTCCTGTGGCCTTGTCCAGAACTAGTACTTGGCTTAAGGCAGAGA-AAGCCCCCTTGGAGCACTGTGTACATACCCAGGGCCTGTGTGTGCTCAGCAAGGCCAAGCTGATAATGTTACCAGGCTCAAACTACAACTGGCCTTGTGGGGTGAGGGTGGGGCAGAAACAGGTAGACCAGCCACCAACCTCATCCATTCAAGAAAGCAGGAATGGCCAGGATCCTGCTGGATAAGTGGCCACCACCAGACCACCAATGGGGCAGAGTCCTGAGGCCCAAGCAGATAGCACAGGGGCCCTGCTTCCAGGGTCCACGATCTGCTCCAGGACACAGGACTGAAGAAAACTAAGCAAATGAGAGCCCAGGAGGCAGGAACCCTACCTCTGCCATTCTTGGCAGTTGTATTTTGTGGTTGGAAAAAGTCAGGAAAACTGGCGCTACCCGCTGCAGGAGGCTCCAAAGTGGGACCAGAGCTTCCAGCATAGATTCAACAATGCCTGAGAAAG-CTCTTCTTGGGGAAAAGGACCTCTTCCTTGGCCTCAAAGCCCCCACTTATTTTTATTAAAGCACAATAAAGTCT--GTTGTTATGA----CCTGTTTTTGAGTTGCCCAGAGCTTTCAGCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1      98866 2980 +    106389 TGGCCTTCACAGCACACAGAATTCAGTCCCTGGGTGCCCAGTGGTACCCAGAAAGAGCATGCAGGACAGACCCTGGATCCTAC---------------------AAC---CAGACCAGATCCCTGGCTT---GTGTGTGAT-ACCTGAAACCAGCATCCACACTGTCCATATGGCCCTCTGCTCTAGCCTGGAGGTAGAGCCAGACCAGGCGTGGAGGGCTGGCTAGGGAGTGGACCCAGGCACCAAACCCACTCCTGACATAACCCAGATGAAAGACAGGAGTGTGGTAAGCACTTCCCTGCCCAGGCCTTCCTCCAGCTGTGGTTTTCTGTGCATAGCCGGACCCCTGGGACAACCACAGTAGGATCCAGCACTGCCTAGTGGAAGGTATCAGAGATGGGAACAAGGTGCAGAAACTGACCCTCCCACAGACCCCTCACAGCTGGATAGTCATTCTGTCCCTAGAACA-CCCCCTGAAGCTGTTCCTGTTTGGCCTGCAGGAGTTCCTTCAGGACATGTTGTCCTAGACCTGGACCCTGGAGGAGGACATAGTGA----------TGAGGCCTCCATGGGAGAACCGAGAAGCATGCCCTGTGACCTGCACCCCCAGGTGGCCTTCAGCATCAGGTCTCCTCTTATGTCACCCTCTGAGGCAGTAAATAGTGGCAGGTGCCCAGACCTCACCAGCCCTGCTCCCTGGGCC-TTCCCCCAGCCCTTCATCTCCCTCTTCCTCTAAGAAGCTTCTGAAAACAAGCTGGCTGGGCCATAGGGCAAAAGCTGACCTTGGATTTACTAGACATGCCTCAGAGACAAGGTGTAT-GGATATGAGCAAA-------------------------------ATTCTCACCCATGAAAGCCCCAGAAGGACACTGAAGGGGTGGGACCCATCTGTGCAAGCCCACAACCACACCTGTGAGTACCAGCAGCCCCGGAGAGCACCAGAGGCCCTTTACTCCTGAGCACCTCTCCAAGGGCCTAAAATCGGTGTCTGAAACATTGAGAGCACTTGGGGAGAGGGCATAGATGAAACCCTGGCCCAGAGCCAGAATTGAGAGCTCAACTGAGTGTGGGAACAGTCCAGCCCTGGCATGGAAGTCCCCCAGAGGGATAGAGGGTGTCTCAACCACTGTGGAGATAACTCCCCATGTCGGGTGGCAAAGGGGGTAGGTAACAGTTAAGGCTCCATCCATCTGAGTTCTGAATTCAAGCTAAATCC----CAGATTAAGCAACCCTGGGATAAAAGTGTGAGGCAGGAAGCCTGAGCCAGCC----CCTGGTGGGCTGACCCAGGAGTGACTTGAGGCTCCTTAACAGCTTCCCCACCCCAGGCTGCACATACACCTCGCCCTGGGATCAGCAGCCTGCAGGGGTTTTCTCAGCATTAGACCATGG---GAACCACATGGGGACCCTGAGGACTCCAGGGACCCAGGTCCATGGGGCCCAGCCTGGCAAAAGTAAGATGTTCTCAGTGGAGAAGCTAACCAAATCTACTTTCCTTTCAGCCAAACCTGAGCAAGTGCCCCCAGCACCCAGGCCTCTGTGGGCATCCCCCAGAGTTGAG-ACCTTCCCCAAGAGGACAGTCTGGTTCTCCTTGGGCCAAAAGCCCAGCTCCAGCAGCCCAT-----------------GGGTATAGCCCTCCTAAAACGGGAGCCTCGTCTTTCCTCACCCTCGCCTGGCTAGGCTGTTCCCAAGGCCAAAGCCCAGAGACATGCGGGAGCTTCTACAGAGCCCAGGATAGCAGGCTGCTCTCCGGGGGCCCTGGGGACTC---AGAATGTGGCCAGCCTGTTCCCAGCTCAGGATAGACCACAGGATGCTTGGTGATTCTTACGTTGGAACTCCCTCTCAAAGCTCCCCATTGATCTGGACCTCAGAGGCCTGTGGTTTTCACAGTACAGCTTGGTGCAGAGACGCTAGGCCCCTGTCACTTCCATATTTGCCCT------GGACATCTCTAAGACCATGGGACTGATCCAGTCCCCAATACCAG-CCCTGCTCAGCCCCCTTATAGCCCAGCGGTAGGGCCAGAGACAACTCTCCTGAATGTGGTACCTGCATCC----AATCA-------AAGAAGGTGACTAACATGGCCCAGAAGGAGCTAGGGCAGCACCTGGAAAGCTG-CCCCAAAGCCCCAGACAGCACCTTAGACATGGAAAGTCAATCCTGATGGGGAAGCTGGACAC-TGGAGGCCACTGGAGAGAAGGGTGAGCATGGCATCCCCACAGCCCAGGCCAGCCAGCAGCTTGCCCTATATCCACAGTCCCAAGCTGTAAGGCAGAACCACCGTCTCAAGGCACAATTCCCAGACCCAGAGGGCCCTAGCCCAGACACAACCTGAGCCCTGAAAGGGAAGGGGGACCAGGAGTGCCTTGGGGCCCCCAGCAGTAGCCAAGATAAGCACACAAGAGACTGAGTCCCCTGTGGCCCTGGCCAGAACTAGTACTTGGCTTAAGGCAGAGC-AAGCCCCCTTGGAGCACTGTATTCATACCTGGGGCCTATGTGTGCTCAGCAAGGACAAGCTGATAATGTTACCAGGCTCAAACTACAACTGGCCTTGTGGGGTGAGGGTGGGGCAGAAACAGGTAGACCAGCCGCCAACCTCATCCATTCAAGAAAGCAGGAATGGCCAGGATCCTGCTGGATAAGTGGCCACCACCAGACCACCAATGGGGCAGAGTCCTGAGGCCCAAGCAGATGGCACTGGGGCTCTGCTTCTAGGGTCCACAATCTGCTCCAGGACACAGGACTGAAGAAAACTAAGCCAATG-GAGTCCAGGAGGCAGGATCCCTACCTCTGCCATTCTTGGCAGTTGCATTTTGTAGTTAGAAAAAGTCAGGAAACCTGGTGCTACCTGCTGCAGGAGGCTCCAAGGTGGGACCCGAGCTTCCAGCATAGATTCAACAATGCCTAAGAAAGACTCTTCTTGGGGAAAAGGAACTCTTCCTTGGCCTCAAAGCCCCCACTTATTTTTATTAAAGCACAATAAAGTCT--GTTGTTATGA----CCTGTTTTTGAGTTGCCCAGAGCTCTCAGCA
i cebCap1.NW_016108310v1   C 0 C 0
s aotNan1.NW_018509740v1     111183 3001 -    457564 TGGCCTTCACAGCACACAGAATTCAGTCCCTGGGTGCCCAATGGTACCCAGAAGGAGCATGCAGGACAGATCCTGAATCCTAC---------------------AGC---GAGAATAGATCCCTGGCTT---GTGTGTGAT-ACCTGCAACCAGCATCCACACTGTCCATATGGCCCTCTGCTCTAGCCCGGAGATAGAGGCAGACCAGGCCTGGAGGACTGGCCAGGGAGTGGACCCAGGTACCAAACCCACTCCTGACATAACCCAGATGAAAGGCAGGAGTGTGGTGAGCACTTCCCTGCCCAGGCCTTCCTCCAGCTGTGGTTTTCTGTGCACAGCCAGACCCCTGGGGCAA-CACAGTAGGATCCAGCACCACCTAGTGGAAAGTGCCAGGCATGGGAACAAGGTGTAGAAACTGACCCTCCCACAAACTCCTCACAGTCGGATAGTCAGCCTGTCCCTAAAACA-CCCCCTGAAGCTGTTCCTGTTTGGCCTGCAGGAGTTACTTCAGGACACGCTGTCCTCGGCTTGGACCCTGGAGGAGGACATAGTGATGAGGCACCCTGAGGCCTCCATGGGAGAACCGAGAAGCATGCCTTGTGACCTGCACCCCCAGGTGGCCTTCAGCACCAGGTCTCCTCCTATGTCACCCGCTGAGGCAGTAAATAGTGGCAGGTACCCAGACCTCACCAGCCCTGCTCCCTGGGCC-TTCTCCCAACCCTTCATCTCCCTCTTCCTCTAAGAAGCTTCTGAAAACAAGCTGGCTGGGCCCTGGGGCAAAAGCTGACCTTGGGTTTACCAGACATGCCTGAGAGACAAGGTGTATGGGATATGAGAAAGA-----------CCCTCCCCTGTACCCTCCTATTCTCACCCATGAAAGCCCCAGAAGGACACTGGAGGGATCACACCCATCTTTGCAAGCCCACAACCACACCTGTGAGTCCCAGCAGCCCCGGAGAGCACCAGAGGCCCTTTACTCCTGAGCACCCCTCCAAGGGCCTAAAATCAGTGTCCGAAACATTGAGAGGACTTGGGGAGAGGGCACAGATGAAACTCTGGCCCAGAGGCAGAATTGAGAGCTCAAATGAGTGTGGGAACAGTCCAGCCCTGGCATGGAAATCCCCCAGAGGGGTACAGGGTGTCTCACCCACTGTGGAGATAACCCCCTATATAGGGTGGCAAAGGGGGTAGGTAACAGTTAAGGCCCCATCCATCTGAGCTCTGAATCAAGGCTAAATCC----CAGATTAAGCAACCCTGGGATAAAAGTGTGAGGCAGGAAGCC----CCAGCC----CCTGGTGGGCTGACCCAGGAGTGACTTGAGATTCCCTAACAGCTTCCCCACAATAGGCTGCACACATACCTCGCCCTGGGATCAGCAGCCTGCAGGGGTGTCCTCAGCATTAGACCATGG---GAACCACATGGGGACCCTGAGGACTCCACAGACTCAGGTCTATGGGGTCCAGCCTGGCAAAAGCAAGATG---TCAGTGGAGAAGCTAACCAAATCTACTTTCCTTTCAGCCAAACCTGAGCAAGTGTCCCCAGCACCCAGGCCTCTGTGGGCATCCCCCAGCATTGAG-ACCCTCCCCAAGGGGATAGTCTGGTTCTCCTTGGGCCAGAAGCGCAGCTCCAGCAGCCCGT-----------------AGGTGTAGCCCTCCTAAAATGGGAGTCTCGTCCATCCTCACCCTCGCCTGGCTAGGCTGTCCCCAAGGCCGAAGCCCAGAGACATGAGGGAGCTTCTGC----TCCAGGATAGCAGGCTGCTCTCTGGAGGCCCTGGGGACTC---AGAATGTGGCCAGCCTGTCCCCAGCTCAGGATAGACCATAGGATGCTTGGTGATTCCTGCATTGGAACTCCCTCTCAAAGCTCCCCATGGATCTGGACCTCAGAGGCCTGTGATTTTCACAGCACAGCTTGGAGCAGAGATGCTAGGCTCCTGTCACTTCCATATTTTCCCT------GGACATCTCTAAGACCACGGGACTGGTCCAGCCCCCAATACCAG-CCCTGCTCAGTCCCCTGATAGCCCAGAGGTAGGGCCAGAGACAACTCTCCTGCATGTGGTGCCTGCATCT----GATCA-------CAGAAGGTGACTAGCATGGCCCAGAAGGAGCTAGGGCAGCACCTGGAAAGCTG-CCCCAAAGCCCCAGACAGCTCCTTAGACATGGAAAGTCAATCCTGATGGGGAAGCTGGACACTTGGAGGCCACTGGAGAGAAGGGTGAGCATGGCATCCCCACAGCCCAGGCCAGCCAGCAGCTTGCCCTACATCCACGGTCCCAACCTGTAAGGCAGAAGCGCCCTCTCAAGGCACTATTCCCAGACCCAGAGGGCCCTAGCCCAGACACAACCTGAGCCCTGAAATGGAAGGGGCACCCTGAGTGCCTTGGGGCCCCCAGCAGTAGCCAAGGTAAGCACACAAGAGACTGAGTCCCCTGTGGCCCTGGCCAGAACTAGTACTTGGCTTAAGGCAGAGC-AAGCCCCCTTGGAGCACTGTGTACATACCCGGGGCCTATGTGTGCTCAGCAAGGCCAAGCTGATAATGTTACCAGGCTCAAACTACAACTGGCCTTGTGGGGTGAGGGTGGGGCAGAAACTGGTAGACTAGCCACCAACCTCATCCATTCAAGAAAGCAGGAATGGTCAGGATCCTGCTGGATAAGTGGCCGCCACCTGACCACCAATGGGGCAGAGTCCTGAGGCCCAAGCAGATGGCACTGGGGCCCTGCTTCCAGGGTCCACAATCTGCTCCAGGACACAGGACTGAAGAAAACTAAGCAAATGAGAGTCTGGGAGGCCAGATCCCTACCTCTGCCATTCTTGGCAGTTGCATTTTGTGGTTAGAAAAAGTCAGGAAACCTGGCGCTACCCACTGCAGGAGGCTCCAAGGTGGGACCAGAGCTTCCAGCATAGATTCAACAATGCCTAGGAAAGCCTCTTCTTGGGGAAAAGGACCTCTTCCTTGGTCTCAAAGCCCCCACTTATTTTTATTAAAGCACAATAAAGTCT--GTTGTTATGA----CCTGTTTTTGAGTTGCCCAGAGCTCTCAGCA
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I

a score=1918225.000000
s hg38.chr6_GL000254v2_alt   798988 264 +   4827813 GGAAGCCCTGGACATACTGGGGTGGATGGGAAATGAAGATGGCACAGCCCAGA-CCCTGACCAGCCTCTCA----------CAGCCTCCCCATCCCAAAGGCCGCAGCAGGGCCAAGCACCAGAAAGGCCAAGGTTCCCACCCAACTGTGA-GCCACACTGCACTGCAGCCTCCCACTCTCAGGCAGATGCCAGGGTTAAGACCCTCCAGTAATTTCCTGTAATTCAAACTGCACCTGATAGGGA--CCCCCAGAGGGCTGGGAAGGGAGCAAAAGTT-
s panTro5.chr6             29762128 264 + 175400573 GGAAGCCCTGGACATACTGGGGTGGATGGGAAATGAAGGTGGCACAGCCCAGA-CCCTGACCAGCCTCTCA----------CAGCCTCCCCATCCCAAAGGCCGCAGCAGAGCCAAGCACCAGAAAGGCCAAGGTTCCCACACAACTGTGA-GCCACACTGCACTGCAGCCTCCCACTCTCAGGCAGATGCCAGGGTTAAGACCATCCAGTAATTTCCTGTAATTCAAACTGCACCTGATAGGGA--CCCCCAGAGGGCTGGGAAGGGAGCAAAAGTT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29996751 264 + 173848474 GGAAGCCCTGGACATACTGGGGTGGATGGGAAATGAAGGTGGCACAGCCCAGA-CCCTGACCAGCCTCTCA----------CAGCCTCCCCATCCCAAAGGCCGCAGCAGAGCCAAGCACCAGAAAGGCCAAGGTTCCCACACAACCGTGA-GCCACACTGCACTGCAGCCTCCCACTCTCAGGCAGATGCCAGGGTTAAGACCATCCAGTAATTTCCTGTAATTCAAACTGCACCTGATAGGGA--CCCCCAGAGGGCTGGGAAGGGAGCAAAAGTT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5800186 264 +   6154872 GGAAGCCCTGGTCATACTGGGGTGGATGGGAAATGAAGGTGGCACAGCCCAGA-CCCTGACCAGCCTCTCA----------CAGCCTCCCCATCCCAAAGGCCGCAGCAGGGCCAAGGACCAGAAAGGCCAAGGTTCCCACACAACTGTGA-GTCACGCTGCACTGCAGCCTCCCACTCTCAGGCAGATGCCAGGGTTAAGACCATCCAGTAATTTCCTGTAATTCAAACTGCACCTGATAGGGA--CCCCCAGAGGGCTGGGAAGGGAGCAAAAGTT-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74499742 275 + 122973662 GGAAGCCCTGGACATACTGGGGTGGATGGGAAATGAGGGTGGCACAGCACAGA-CCCTGACCAGCCTCTCACAGCCTCCCCCAGCCTCCCCATCCCAAAGGCCGCAGCAGGGCCAAGGACCAGAAAGGCCAAGGTTCCCACACAACTGTGAGGCCACACTGCACTGCAGCCTCCCACTCTCAGGCAGATGCCAGGGTTAAGACCATCCAGTAATTTCCTGTAATTCAAACTGCACCTGATAGGGA--CCCCCAGAGGGCTGGGAAGGGAGCAAAAGTT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29973464 262 + 172585720 GGAAACCCTGGGCACATTGAGGTGGATGGGAAATGAGGGTGACACAGCCCAGACCCCTGACCAGCCTCTCA----------CAGCCTCCCCATCCCAAAGGCTGCAGCAGGGCCAAGGACCAGAAAGGCCAAGGTTCCCACACAACTGTGAGGCCACACTGCACTGCAGCCTCCCACTCTCAGGCAGATGCCAGGGTTAAGA----CCAATAATTTACTGTAATTCAAACTGTGCCTGACAGGGA--ACCCCAGAGGGCTGGGAAGGGAGCAAAAGTT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29637405 262 - 170955103 GGAAACCCTGGGCACATTGAGGTGGATGGGAAATGAGGGTGACACAGCCCAGACCCCTGACCAGCCTCTCA----------CAGCCTCCCCATCCCAAAGGCTGCAGCAGGGCCAAGGACCAGAAAGGCCAAGGTTCCCACACAACTGTGAGGCCACACTGCACTGCAGCCTCCCACTCTCAGGCAGATGCCAGGGTTAAGA----CCAATAATTTACTGTAATTCAAACTGTGCCTGACAGGGA--ACCCCAGAGGGCTGGGAAGGGAGCAAAAGTT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2680853 262 -   2996164 GGAAACCCTGGGCACATTGAGGTGGATGGGAAATGAGGGTGACACAGCCCAGACCCCTGACCAGCCTCTCA----------CAGCCTCCCCATCCCAAAGGCTGCAGCAGGGCCAAGGACCAGAAAGGCCAAGGTTCCCACACAACTGTGAGGCCACACTGCACTGCAGCCTCCCACTCTCAGGCAGATGCCAGGGTTAAGA----CCAATAATTTACTGTAATTCAAACTGTGCCTGACAGGGA--ACCCCAGAGGGCTGGGAAGGGAGCAAAAGTT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     432829 262 +    766320 GGAAACCCTGGGCACATTGAGGTGGATGGGAAATGAGGGTGACACAGCCCAGACCCCTGACCAGCGTCTCA----------CAGCCTCCCCATCCCAAAGGCCGCAGCAGGGCCAAGGACCAGAAAGGCCAAGGTTCCCACACAACTGTGAGGCCACACTGCACTGCAGCCTCCCACTCTCAGGCAGATGCCAGGGTTAAGA----CCAATAATTTACTGTAATTCAAACTGTGCCTGACAGGGA--ACCCCAGAGGGCTGGGAAGGGAGCAAAAGTT-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28891049 266 -  71996105 GGAAACCCTGGGCACATTGGGGTGGATGGGAAATGAGGGTGACACAGCCCAGACCCCTGACCAGCCTCTCA----------CAGCCTCCCCATCCCAAAGGCCGCAGCAGGGCCAAGGACCAGAAAGGCCAAGGTTCCCACACAACTGTGAGGCCACACTGCACTGCAGCCTCCCACTCTCAGGCAGATGCCAGGGTTAAGACCATCCAATAATTTACTGTAATTCAAACTGCGCCTGACAGGGA--ACCCCAGAGGGCTGGGAAGGGAGCAAAAGTT-
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2496482 266 -   3067355 GGAAACCCTGGGCACATTGGGGTGGATGGGAAATGAGGGTGACACAGCCCAGACCCCTGACCAGCCTCTCA----------CAGCCTCCCCATCCCAAAGGCCGCAGCAGGGCCAAGGACCAGAAAGGTCAAGGTTCCCACACAACTGTGAGGCCACACTGCACTGCAGCTTCCCACTCTCAGGCAGAGGCCGGGGTTAAGACCACCCAATAATTTACTGTAATTCAAACTGCGCCTGACAGGGA--ACCCCAAAGGCCTGGGAAGGGAGGAAAAGTT-
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            69200 262 -    242197 GGAAACCCTGGACATGCTGGGGTGGATGGGAAATGAGGGTGGAACAGCCCAGA-CCCTGATCAGCCTCTCA----------TAGCTTCCTTATCCCAAAGGCCACAGCAAGGCCAAGGACCAGAATGGCCAAGTTTCCCACAGAACTGTGAGACCACACTGCACTGCAGCCTCCCACTCTCAGGCAGATGCCAGGGTTAAGA----TCAATAATTTACTGCGATTCAACCTGCAGCTGACAAGGA--CTCCCAGAGGACTGGAAAGGGAGCAAAAGGTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016108310v1     101846 262 +    106389 GGAAACCCTGGACATGCTGGGGTGGATGGGAAATGAGGGAGGCACAGCCCAGA-TCCTGTTCAGCCTCTTA----------TAGCTTCCTTATCCCAAAGGCCACAGCAAGGCCAAGGACAAGATTGGCCAAGTTTCCCAAAGAACTGTGAGGCCACACTGCACTGCAGCCTCCCACTCTGAGGCAGATGCCAGGGTTAAGA----CCAATAATTTACCATGATTCAACCTGCAGCTGACAGGGA--CCCCCAGAGGACTGGAAAGGGAACAAAAGATT
i cebCap1.NW_016108310v1   C 0 C 0
s aotNan1.NW_018509740v1     114184 259 -    457564 GGAAACCCTGGACATGCTGGGGTGGATGGGAAATGAGGGCAGCACAGCCCAGA-CCCCGG-----CTCTCG----------TAGCCTCCTTATCCCAAAGGCTGCAGCAAGGCCAAGGACCAGAATGGCCAAGTTTCCCACAGAACTGTGAGGCCACACTGCACTGCAGCCTCCCACTCTCAGGCAGATGCCACGGTTAAGA----CCAATAATTTACTGTGATTCAACCTGCAGCTGACAGGGACCCCCCCAGAGGACTGGAAAGGGAGCAAAAGGTT
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e manLeu1.NW_012099233v1      66839   0 +    290775 C

a score=21125927.000000
s hg38.chr6_GL000254v2_alt   799252 2526 +   4827813 GGAGTTCCAGTGACATTGCTCATTCATGACAGTCTGTACAAAGCATCCCTGAGAGGGTCTGCTGTCACCTGTGTCTACTGTCCCTGGGTGGCTGGTCTCCGGCAGccctcccttcctttcttccctccttccctccccacatccctccctccctctcttccttcttctct----tgcttccctcATC---CTTTCCATCTCATCTCCTCTCAGCATCTGGCAATCCCAGGTCCTGAGCCTGTGCCAAGGCGGGACACAAAGGACACCACTGACAACAAGCCAGGTGAC-TAGCGGGGTC-GGGGAGCCTTGTGGAATCAGAGTGGATGGGGAGGGGCTCATCTGTGCAGCCCAGGACTGCTGCCCCGGGAACAGTCTAGAACAGTGCAGAAgt--gtgtgtccctgtgtgtgcacatgtgcacgtgta----------------tgtgtatgtgtgtgcgtgcctgtgCACACCTGTTTACTCAGTTCTGCTCTAAGTCCATGTCCACGACCCCAGAAGATCCCAGGTATGT-CCTCACTGACGTCTGCTGAAATCAAGCATGGCCCCTGCTGGTAGTTATTGCACTGTGTAATGCCATCGTCGGGACCTCAGAGCAATAGAAACCAGTGGACCCCTTTAGGCTTTTCTTTCCAATGGGACATAAAGAAGTTATATGGACAGAAGTTATATCCTGTTTTCTTTCCATTGATTCTTTTACCACCTTTCTCCTCTTACTGATTTTGAATGAAGGGGGTTTTTCATGAGGGTAAGGTAACTGGCAAGAAATGAAATAACAgccagatgcagtggctcacgc--------------------------------------------------------------------------ctgtaatcccaagattttcggaggccaaggagggtgggttgcctgagtccagaagttcaagaccagcctagacaacatggtgaaagcccatttctaccaaaacaaaaaaat-tagccaggtgtggtggcacgcgcctgtagttccagctactggtggggctgaggtgggagaatggcttaagcctggaagtcagagagtggagattgcagtgagctgagatcacgccattgcactgcagcctgggcagcagagcaagaacctgtctcaa----aaaaagaaaaaaagaaaaggaa-----agaaaTGAGATACCGAGAAACTAGCAAAGCTTCACCTGGCTGTCTGGAGACAGCCCTTGTGTGGTCCCCAGCCCACCTCACAGGTTCTAGGCTGGCCACCCTGTGGCCTCTGTACTGTGTATCTGGACCCAGGCTCTGTGGGAAGGG-------------------------TACCTGGTCTGACAAACATTCCTCCATTTTTCTGGCTGCAGCTT-GGAATAGGCCCAGACAGCATGTCCAGGAGATGCCAGACAACCTCACTATATCCTGTGAGACAGGCCCAGTGGGCCTTGAAGGAAGGGGTGAGCATGAAGCTGGGCACCCAGAGCCTGAGACCAACTGTCCCTCCCTGTGCCCTGGAGGAGGGGCCT------------------------GGCCTGTCAGTGTAGATGTGGGGAGAGAAGGGTCTGTGGACCCAGGAAGGGACATTGGTAGGGGACTTTGAGCACCACTGCTCAGGGGACATGAATGACAGGGTGGGAGGCATCTCCCATTTCTGCCCTGAGCACAGCACCCCTTTGACTCCTGAGGGCCACGAGGAGTCCACTCCCCagagctttttgta-gaacctgcatatgagtccatcagaggtgagatttgcaaatacttcctccagcctgggacttgtcttttcattctcctcacagggtctttcagagtgcacacatcattttgatgaagtccaattgatcatttttttttccttttatgcatcatgcttttggtgcttatctaacaaatatttctctaatccaaagtcacactaatatctacctttttccttatgcaaattttaaagttttaggccttacattttggtttatgatacattttgaataatggtgccatgtatggactgaagtttttaatatgcatatctaattgttctaatagtatttgttgctaagattgtcttttctccactgaatttgctgtacaacttttgaaaaacaattgaacacatatgtgatggtctattctggactctgtattctgttctattgatccatttgtctagcctcttaccaataccataccgtctgaatttctgaacctttacgataggtcttgaagttaggtattgttagccatcttacttaattcttcttttttaG-----------AGGGTTTTTTATTTCTAATCTAGGTCCACTGCATTGCCACACACAGAAACCCGTGCCCTTGAGCATAC-------------------ATACATATGCAACACAAGTATAAATATATGCACAGAacgacaaagtgaaatttatcccaagaatgcaaggctgcttcaacgttaaaaatgggccagtataactcaccatattaacagatgaaaagacaacagcacatcattatttcagtatatttggaaaaagcattagacaaaatccatcaaccttataaaaacttccagtctatttctattcctaaaaactaggaatagaagtgaattttcttaaactgataaaaggcacctacaaaaaccctgtagttgatgtttac
s panTro5.chr6             29762392 2521 + 175400573 GGAGTTCCAGTGACATTGCTCATTCATGACAGTCTGTACAAAGCATCCCTGAGAGGGTCTGCTGTCACCTGTGTCTACTGTCCCTGGGTGGCTGGTCTCCGGCAGccctc----cctttcttccctccttccctccccacatccctccctccctctcttccttcttctct----tgcttccttcatc---cTTTCCATCTCATCTCCTCTCAGCATCTGGCAATCCCAGGTCCTGAGCCTGTGCCAAGGCGGGACACAAAGGACACCACTGACAACCAGCCAGATGAC-TAGCGGGGTCAGGGGAGCCTTGTGGAATCAGAGTGGATGGGGAGGGGCTCATCTGTGCAGCTCAGAACTGCTTCCCCGGGAACAGTCTAGAACAGTGCAGAAgt--gtgtgtccctgtgtgtgcacatgtgcacgtgta----------------tgtgtatgtgtgtgcgtgcctgtgCACACCTGTTTACTCAGTTCTGCTCTAAGTCCATGTCCATGACCCCAGAAGATCCCAGGTATGT-CCTCACTGACGTCTGCTGAAATCAAGCATGGCCCCTGCTGGTAGTTATTGCACTGTGTAATGCCATTGTCGGGACCTCAGAGCAATAGAAACCAGTGGACCCCTTTAGGCTTTTCTTTCCAATGGGACATAAAGAAGTTATATGGACAGAAGTTATATCCTGTTTTCTTTCCATTGATTCTTTTACCA-CTTTCTCCTCTTACTGATTTTGAATGAAGGGGGTTTTTCATGAGGGTAAGGTAACTGGCAAGAAATGAAATAACAgccagatgcagtggctcacgc--------------------------------------------------------------------------ctgtaatcccaagattttcggaggccaaggagggtgggttgcctgagtccagaagttcaagaccagcctagacaacatggtaaaagcccatttctaccaaaacaaaaaact-tagccaggtgtggtggcacgcgcctgtagttccagctactggtggggctgaggtgggagaatggcttaagcctggaagtcagagagtggagactgcagtgagctgagagcacgccattgcactgcagcctgggcagcagagcaagaacctgtctcaa----aaaaagaaaaaaagaaaaggaa-----agaaaTGAGATACCGAGAAACTAGCAAAGCTTCACCTGGCTGTCTGGAGACAGCCCTTGTGTGGTCCCCAGCCCACCTCACAGGTTCTAGGCTGGCCACCCTGTGGCCTCTGTACTGTGTATCTGGACCCAGGCTCTGTGGGAAGGG-------------------------TACCTGGTCTGACAAACATCCCTCCATTTTTCTGGCTGCAGCTT-GGAATAGGCCCAGACAGCATGTCCAGGAGATGCCAGACAACCTCACTATATCCTGTGAGACAGGCCCAGTGGGCCTTGAAGAAAGGGGTGAGCATGAAGCTGGGCACCCAGAGCCTGAGACCAACTGTCCCTCCCTGTGCCCTGGAGGAGGGGCCT------------------------GGCCTGTCAGTGTAGATGTGGGGAGAGAAGGGTCTGTGGACCCAGGAAGGGACATTGGTAGGGGACTTTGAGCACCACTGCTCAGGGGACATGAATGACAGGGTGGGAGGCATCTCCCATTTCTGCCCTGAGCACAGCACCCCTTTGACTCCTGAGGGCCACGAGGAGTCCACTCCCCagagctttttgta-gaacctgcatatgagtccatcagaggtgagatttgcaaatacttcctccagcctggggcttgtcttttcattctccccccagggtctttcagagtgcacacatcattttgatgaagtccaattgatca-ttttttttccttttatgcatcatgcttttggtgcttatctaacaagtatttctctaatccaaagtcacactaatatctacctttttccttatgcaaattttaaagttttaggccttacattttggtttatgatacattttgaataatggtgccatgtatggactgaagtttttaatatgcatatctaattgttctaatagtatttgttgctaagattgtcttttctccactgaatttgctgtacaacttttgaaaaacaattgaacatatatgtgatggtctattctggactctgtattctgttctattgatccatttgtctagcctcttaccaataccataccgtctgaatttctgaacctttacgataggtcttgaagttaggtactgttagccatcttacttaattcttcttttttag-----------agggttttttatttctaatctaggtccactgcattgccacacaCAGAAACCCGTGCCCTTGAGCATAC-------------------ATACATATGCAACACAAGTATAAATATATGCACAGAacgacaaagtgaaatttatcccaggaatgcaaggctgcttcaacgttaaaaatgggccagtataactcaccatattaacagatgaaaagacaacagcacatcattatttcagtatatgtggaaaaagcattagacaaaatccatcaaccttataaaaacttccagtctatttctattcctaaaaactaggaatagaagtgaattttcttaaacagataaaaggcacctacaaaaaccgtatagttgatgtttac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29997015 2522 + 173848474 GGAGTTCCAGTGACATTGCTCATTCACGACAGTCTGTACAAAGCATCCCTGAGAGGGTCTGCTGTCACCTGTGTCTACTGTCCCTGGGTGGCTGGTCTCCGGCAGccctc----cctttcttccctccttccctccccacatccctccctccctctcttccttcttctct----tgcttccttcatc---cTTTCCATCTCATCTCCTCTCAGCATCTGGCAATCCCAGGTCCTGAGCCTGTGCCAAGGCGGGACACAAAGGACACCACTGACAACAAGCCAGATGACTTAGTGGGGTCAGGGGAGCCTTGTGGAATCAGAGTGGATGGGGATGGGCTCATCTGTGCAGCCCAGAACTGCTTCCCCGGGAACAGTCTAGAACAGTGCAGAAgt--gtgtgtccctgtgtgtgcacatgtgcacgtgta----------------tgtgtatgtgtgtgcgtgcctgtgCACACCTGTTTACTCAGTTCTGCTCTAAGTCCATGTCCATGACCCCAGAAGATCCCAGGTATGT-CCTCACTGACGTCTGCTGAAATCAAGCATGGCCCCTGCTGGTAGTTATTGCACTGTGTAATGCCATCGTCGGGACCTCAGAGCAATAGAAACCAGTGGACCCCTTTAGGCTTTTCTTTCCAATGGGACATAAAGAAGTTATATGGACAGAAGTTATATCCTGTTTTCTTTCCATTGATTCTTTTACCA-CTTTCTCCTCTTACTGATTTTGAATGAAGGGGGTTTTTCATGAGGGTAAGGTAACTGGCAAGAAATGAAATAACAgccagatgcagtggctcacgc--------------------------------------------------------------------------ctgtaatcccaagattttcggaggccaaggagggtgggttgcctgagtccagaagttcaagaccagcctagacaacatggtaaaagcccatttctaccaaaacaaaaaact-tagccaggtgtggtggcacgcgcctgtagttccagctactggtggggctgaggtgggagaatggcttaagcctggaagtcagagagtggagactgcagtgagctgagagcacgccattgcactgcagcctgggcagcagagcaagaacctgtctcaa----aaaaagaaaaaaagaaaaggaa-----agaaaTGAGATACCGAGAAACTAGCAAAGCTTCACCTGGCTGTCTGGAGACAGCCCTTGTGTGGTCCCCAGCCCACCTCACAGGTTCTAGGCTGGCCACCCTGTGGCCTCTGTACTGTGTATCTGGACCCAGGCTCTGTGGGAAGGG-------------------------TACCTGGTCTGACAAACATCCCTCCATTTTTCTGGCTGCAGCTT-GGAATAGGCCCAGACAGCATGTCCAGGAGATGCCAGACAACCTCACTATATCCTGTGAGACAGGCCCAGTGGGCCTTGAAGGAAGGGGTGAGCATGAAGCTGGGCACCCAGAGCCTGAGACCAACTGTCCCTCCCTGTGCCCTGGAGGAGGGGCCT------------------------GGCCTGTCAGTGTAGATGTGGGGAGAGAAGGGTCTGTGGACCCAGGAAGGGACATTGGTAGGGGACTTTGAGCACCACTGCTCAGGGGACATGAATGACAGGGTGGGAGGCATCTCCCATTTCTGCCCTGAGCACAGCACCCCTTTGACTCCTGAGGGCCACGAGGAGTCCACTCCCCagagctttttgta-gaacctgcatatgagtccatcagaggtgagatttgcaaatacttcctccaggctggggcttgtcttttcattctccccacagggtctttcagagtgcacacatcattttgatgaagtccaattgatca-ttttttttccttttatgcatcatgcttttggtgcttatctaacaagtatttctctaatccaaagtcacactaatatctacctttttccttatgcaaattttaaagttttaggccttacattttggtttatgatacattttgaataatggtgccatgtatggactgaagtttttaatatgcatatctaattgttctaatagtatttgttgctaagattgtcttttctccactgaatttgctgtacaacttttgaaaaacaattgaacatatatgtgatggtctattctggactctgtattctgttctattgatccatttgtctagcctcttaccaataccataccgtctgaatttctgaacctttacgataggtcttgaagttaggtactgttagccatcttacttaattcttcttttttaG-----------AGGGTTTTTTATTTCTAATCTAGGTCCACTGCATTGCCACACACAGAAACCCGTGCCCTTGAGCATAC-------------------ATACATATGCAACACAAGTATAAATATATGCACAGAacgacaaagtgaaatttatcccaggaatgcaaggctgcttcaacgttaaaaatgggccagtataactcaccatattaacagatgaaaagacaacagcacatcattatttcagtatatgtggaaaaagcattagacaaaatccatcaaccttataaaaacttccagtctatttctattcctaaaaactaggaatagaagtgaattttcttaaacagataaaaggcacctacaaaaaccgtatagttgatgtttac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5800450 2524 +   6154872 GGAGTTCCAGTGACATTGCTCATTCGTGACAGTCTGTACAAAGCATCCCTGAGAGGGTCTGCTGTCACCTGTGTCTACTGTCCCTGGGTGGCTGGTCTCCGGCAGccctcccttcctttcttccctccttcactccccacatccctccctccctctcttccttcttctct----tgcttccctcATC---CTTTCCATCTCATCTCCTCTCAGCATCTGGCAATCCCAGGTCCTGAGCCTGTGCCAAGGCAGGACACAAAGGACACCACTGACAACAAGCCAGATGAC-TAGCGGGGTCAGGGGAGCCTTGTGGAATCAGAGTGGATGGGGAGGGGCTCATCTGTGCAGCCCAGGACTGCTGTCCCGGGAACAGTCTAGAACAGTGCAGAAgt--gtgtgtccctgtgtgtgcacatgtgcacgtgta----------------tgtgtatgtgtgtgcgtgcctgtgCACACCTGTTTACTCAGTTCTGCTCTAAGTCCATGCCCATGACCCCAGAAGATCCCAGGTATGT-CCTCACTGACGTCTGCTGAAATCAAGCATGGCCCCTGCTGGTAGTTATTGCACTGTGTAATGCCATCCTCGGGACCTCAGAGCAATAGAAACCAGTGGACCCCTTTAGGCTTTTCTTTCCAATGGGACGTAAAGAAGTTATATGGACAGAAGTTATATCCTGTTTTCTTTCCATTGATTCTTTTACCACCTTTCTCCTCTTACTGATTTTGAATGAAGGGGGTTTTTCATGAGGGTAAGGTAACTGGCAAGAAATGA---AACAgccagatgcagtggctcacgc--------------------------------------------------------------------------ctgtaatcccaagattttcggaggccaaggagggtgggttgcctgagtccagaagttcaagaccagcctagacaacatggtgaaagcccatttctaccaaaacaaaaaaat-tagccaggtgtggtggcacgcgcctgtagttccagctactggtggggctgaggtgggagaatggcttaagcctggaagtcagagagtggagattgcagtgagctgagatcacgccattgcactgcagcctgggcagcagagcaagaacctgtctcaa----aaaaagaaaaaaagaaaaggaa-----agaaaTGAGATACCGAGAAACTAGCAAAGCTTCACCTGGCTGTCTGGAGACAGCCCTTGTGCGGTCCCCAGCACACCTCACAGGTTCTAGGCTGGCCACCCTGTGGCCTCTGTACTGTGTATCTGGACCCAGGCTCTGTGGGAAGGG-------------------------TACCTGGTCTGACAAACATCCCTCCATTTTTCTGGCTGCAGCTT-GGAATAGGCCCAGACAACATGTCCAGGAGATGCCAGACAACCTCACTATATCCTGTGAGACAGGCCCAGTGGGCCTTGAAGGAAGGGGTGAGCATGAAGCTGGGCACCCAGAGCCTGAGACCAACTGTCCCTCCCTGTGCCCTGGAGGAGGGGCCT------------------------GGCCTGTCAGTGTAGATGTGGGGAGAGAAGGGTCTGTGGACCCAGGAAGGGACATTGGTAGGGGACTTTGAGCACCACTGCTCAGGGGACATGAATGACAGGGTGGGAGGCATCTCCCATTTCTGCCCTGAGCACAGCACCCCTTTGACTCCTGAGGGCCACGAGGAGTCCACTCCCCagagctttctgta-gaacctgcatatgagtccatcagaggtgagatttgcaaatacttcctccagcctggggcttgtcttttcattctccccacagggtctttcagagtgcacacatcattttgatgaagtccagttgatcatttttttttccttttatgcatcatgcttttggtgcttatctaacaaatatttctctaatccaaagtcacactaatatctacctttttccttatgcaaattttaaagttttaggccttacattttggtttatgatacattttgaataatggtgccatgtatggactgaagtttttaatatgcatatctaattgttctaatagtatttgttgctaagattgtcttttctccactgaatttgctgtacaacttttgaaaaacaattgaacatatatgtgatggtctattctggactctgtattctgttctattgatccatttgtctagcctcttaccaataccataccgtctgaatttctgaacctttacgataggtcttgaagttaggtactgttagccatcttacttaattcttcttttttaG-----------AGGGTTTTTTATTTCTAATCTAGGTCCACTGCATTGCCACACACAGAAACCCATGCCCTTGAGCATAC-------------------ATACATATGCAACACAAGTATAAATATATGCACAGAacgacaaagtgaaatttatcccaggaatgcaaggctgcttcaacgttaaaaacgggccagtataactcaccatattaacagatgaaaagacaacagcacatcattatttcagtatatgtggaaaaagcattagacaaaatccatcaaccttataaaaacttccagtctatttctatttctaaaaactaggaatagaagtgaattttcttaaactgataaaaggcacctacaaaaaccgtatagttgatgtttac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74500017 2511 + 122973662 GGAGTTCCAGTGACATTGCTCATTCATGACAGTCTGTACAAAGCATCCCTGAGAGGATCTGCTGTCACCTGTGTCTACTGTCTCTGGGTGGCTTGTCTCCAGCAGCcctcccttcctttcttccctccctccctccccacatccctccctccctctcttccttcttccct----tgcttccctcatc---ctttccatcTCATTTCCTCTCAGCATCTGGCAATCCCAGGTCCTGAGCCTGTGCCAAGGCGGGACACAAAGGACACCACTGACAACAGGCCAGGTGAC-TAGAGGGGTCAGGGGAGCCTTGTGGAGTCAGAGTGGATGGGGAGGGGCTCATCTGTGCAGCCCAGGACTGCTGCCCCGGGAGCAGTCTAGAACAGTGCAGAAGT--GTGtgtccctgtgtgtgcacatgtgcatgtgta----------------tgtgtatgtgagtgcgtgcctgtgcaCACCTGTTTACTCAGTTCTGCTCTAAGTCCATGTCCATGACCCCAGAAGATCCCAGGTATGTCCCTCACTGACGTCTGCTGAGATCAAGCACGGCCCCCGCTGGTAGTTATTGCACTGTGTAATCCCATCCTCAGGACCTCAGAGCAATAGAAACCAATGGACCCCTTTAGGCTTTTCTTTCCAATGGGACATAAAGAAGTTATATGGACAGAAGTCATATCCCGTTTTCTTTCCGTTGATTCTTTTACCACCTTTCTCCTCTTACTGATTTTGAATGAAGGGGGTTTTTCATGAGGGTAAGGTAACTGGCAAGAAATGAAGTAACAgccagatgcagtggctcacgc--------------------------------------------------------------------------ctgtaatcccaagattgt-ggaggccgaggagggtgggttgcctgagtccagaagttcaagaccagcgtaggcaacatgatgaaagcccatttctaccaaaacaaaaaaat-tagccaggtgtggtggcacacgcctgtagttccagctactggtggggctgaggtgggagagtggcgtaagcctggaagtcagagagtggagattgcagtgagctgagatcacgccattgcactgcagcctgggcagcagagcaagaccctgtctcaa----aaaaagaaaaaaagaaaaggaa-----agaaaTGAGATACCGAGAAACCAGCAAAGCTTCGCCTGGCTGTCTGGAGACAGCCCTTGTGTGGTCCCCAGCACACTTCACAGGTTCTAGGCTGGCCACCCTGTGGCCTCTGTACTGCGTATCTAGACCCAGGCTCTGTGGGAAGGG-------------------------TACCTGGTCTGACAAACATCCCTCCATTTTTCTGGCTGCAGCTTGGGAATAGGCCCAGACAGCATGTCCAGGAGATACCAGACAACCTCACTATATCCTGTGAGACAGGCCCAGTAGGCCTTGAAGGAAGGGGTGAGCATGAAGCTGAGCACCCAGAGCCTGAGACCAACTGTCCCTCCCTGTGGCCTGGAGGAGGGGCCT------------------------GGCCTGTCGGTGTAGATGTGGGGAGAGAAGGGTCTGCAGACCCAGGAAGGGCCATTGGTAGGGGACTTTGAGCACCACTGGTTAGGGGACATGAATGACAGGGTGAGAGGCATCTCCCATTTCTGCCCTGAGCACAGCACCCCTTTGACTCCTGAGGGCCACGAGGAGTCCACTCCCCagagctttttgta-gatcctgcatatcagtccatcagaggtgagatttgcaaatacttcctctggcctggggtttgtcttttcattctccccacagggtctttcagagtgcacacatcattttgatgaagtccaattgatcg-ttttttttccttttatgcatcatgcttttggtgcttatctaacaaatatttatctaatccaaagtcacactaatatctacctttttccttatgcaaattttaaagttttagaccttacattttggtttacgatacattttgaataatggtgccatgtatggattgaagtttttaatatgcatatctaattgttctaatagtatttgttgctaagattgtcttttctccacagaatttgctgtacaatttttgaaaaacaattaaacatatatgtgatggtctattctggactctgtattctgttctattgatccatttgtctagcctcttaccaataccataccatctgaatttctgaacctttaccgtaagtcttgaagttaggtactgttagccatcttacttaattattcttttttag-----------agggttttttttttctaatctaggtccactgcattgccacaCACAGAAAAACGTGCCCTTGAGCATAC-------------------ATACATATGCAACACAAatataaatatatgcacagaacaacaaagtgaaatttatcccaggaatgcaaggctgcttcaacattaaaaatgggccagtataacccaccatatt---------------aacagcacatgattatttcagtatatttggaaaaagcattagacaaaatccaacaaccttataaaaacttccagtctatttctattcctaaaaactaggaatagaagtgaattttcttaaactgataaaaggcacctacaaaaaccctacagttgat-tttac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29973726 2545 + 172585720 GGAGTTCCAGTGACATCGCTCATTCATGACAGTCTGTACAAAGCATCCCTGAGAGGGTCTGCTGTCACCTGTGCCTACTGTCCCTTGATGGCTGGTCTCCAGCAGccctccctccctttcttccctccctccctccccacatccctccctccctctctcc-ttcttccct----tg--tccctcatccttctttccatctcatctcctcTCAGCATCTGGCAATCCCAGGTCCTGAGCCTGTGCCAAGGCGGGACACAAAGGACACCACTGACAACAGACCAGGTGAC-TAGCAGGGTCAGGGGAGCCTTGTGGAGTCAGAGTGGATGGGGAGGGGCTCATCTGTGCAGCACAGGACt---------------------------------gt--gtgtgtccctgtgtgtgcacatgtgtatgtgtatgta------------tgtgtgtgtgtgtgtgtgcctgtgCACCCCTGTTTACTCAGTTCTGCTGTAAGTCCATGTCCATGACCCCAGAAGATCCCAGGTATGT-CCTCACTGACATCTGCTGAGATCAAGCATGGCCCCTGCTGGTAGTTATTGCACTGTGTGATGCCATCCTCGGGACCTCAGAGCAATAGAAATTAATGAACCCCTTTAGGCTTCTCTTTCCAATGGGACATAAAGAAGTTACACGGACAGAAGTTATATCCTGTTTTCTTTCCATTGACTCTTTTACCATCTTTCTCCTCTTACTGATTTTGAATGAAGGGGGTTTTTCATGAGGGTAAGGTAACTGGCAAGAAATGAAGTAACAGCCACATgcagtggctcacac--------------------------------------------------------------------------ctgtaatcccaggattttgggaggctgaggagggtgggttgcctgagtccagaagttcaagaccagcctagacaatatgttcaaagcccatttctatcaaaacaaaaaaat-tagccaggcatggtggcacccgcctgtagttccagctactggtggggctgaggtgggagaatggcttaagtctggaggtaagagagtggagattgcagtgagccgagctcacgccattgcactgcagcctgggcaacagagcaagatcctgtctcaaaaagaaaaagaaaaaaagaaaCGGAA-----AGAAATGAGGTACTGAGAAACTAGCAAAGCTTCGCCTGGCTGTCTGGAGACAGCCCTTTTGTGGTCCCCAGCACACTTCACAGGTTCTAGGCTGGCCA--CTATGGCCTCTGTACTGTGTGTTTAGACCCAGGCTCTGTGGGAAGGGCCCCATGAGACCCAGTAGAACAGGGTAGCTGGCCTGACAAACATCCCTCCATTTCTCTGGCTGCAGCTTGGGAATAGGCCCAGACAGCATGTCCAGGAAACGCCAGACAACCTCACTATATCCTGTGAGACAGGCCCGGTGGGCCTTG----AAGGGGTGAGCATGACGCTGGGCACCCAGAGCCTGAGAGCAACTGTCCCTCCCTGTGCCCTGGAGGAGGGGCCTGTC-----------CCTAGGGCCTGGCCTGGCGTTGTAGACGTGGGGAGAGAAGGGACTGTGGACTCAGGAAGGGGCATTGGTATGGGACTTTGAGCACCACTGCTCAGGGGACATGAATGACAGGGTGGGAGGCATCTTCCATTTCTACCCTAAGCACAGCACCCCTTTGACTCCTGAGGGCCGTGAGGAGTCCTCTCCCCagagcttttt-ta-gatcctgtgtatgagtccatcagaggtgagatttgcaaatacttgctccagcctgggacttgtcttttcattctccccacagggtctttcagagtgcacacatcattgtgatgaaattcaattgatca-tgctttttccttgtatgcatcatgcttttggtgcttatctaacaaatatttctctaatccaaagtcacactaatatctacctttttccttatgcaaattttaaagttttaggccttacattttggtttatgatacattttgaataatggtgccatgta-----tgaagtttttaatatgcatatctaattgttctaatagtatttgttgctaagattgtcttttctccactgaatttgctgtacaccttttgaaaaacaattgaatatatatgtgatggtctattctggactctgtattccgttctgttgatctatttgtctagcctcttaccagtaccataccgtctgaatttctgaaccgttacaataagtcttgaagttaggtact-ttagccatcttacttaattcttcttttttag-----------agggtttctt-tttttattctaggttcactgcattgccataCACAGAAACACGTGCCCTTGAGCACACatacatatgcaatacaaatatacatatgcaacacaaatataaatataGGCACAGAatgacaaagtgaaatttatcccaggaatgcaaggctgcttcaacattaaaaatgggcccatataacctaccatattaacagataaaaagacaacagcacatcattatttcagtatatttagaaaaagcattagacaaaatccaacaaccttataaaaacttccagtctatttctattcctaaaaactaggaatagaagtgaattttcctaaactgataaaaggcacctacaaaacctctgtagttgatgtttag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29637667 2542 - 170955103 GGAGTTCCAGTGACATCGCTCATTCATGACAGTCTGTACAAAGCATCCCTGAGAGGGTCTGCTGTCACCTGTGCCTACTGTCCCTTGGTGGCTGGTCTCCGGCAGccctccctcccttTCTTCCCTCCCTCTCTCCCCACATCCCTCCCTCCCTCTCTCC-TTCTTCCCT----TG--TCCCTCATCCTTCTTTCCATCTCATCTCCTCTCAGTATCTGGCAATCCCAGGTCCTGAGCCTGTGCCAAGGCGGGACACAAAGGACACCACTGACAACAGGCCAGGTGAC-TAGCGGGGTCAGGGGAGCCTTGTGGAGTCAGAGTGGATGGGGAGGGGCTCATCTGTGCAGCACAGGACt---------------------------------gt--gtgtgtccctgtgtgtgcacatgtgtatgtgta----------------tgtgtgtgtgtgtgtgtgcctgtgAACCCCTGTTTACTCAGTTCTGCTGTAAGTCCATGTCCATGACCCCAGAAGATCCCAGGTATGT-CCTCACTGACATCTGCTGAGATCAAGCATGGCCCCTGCTGGTAGTTATTGCACTGTGTGATGCCATCCTCGGGACCTCAGAGCAATAGAAATTAATGAACCCCTTTAGGCTTCTCTTTCCAATGGGACATAAAGAAGTTACACGGACAGAAGTTATATCCTGTTTTCTTTCCATTGACTCTTTTACCATCTTTCTCCTCTTACTGATTTTGAATGAAGGGGGTTTTTCATGAGGGTAAGGTAACTGGCAAGAAATGAAGTAACAGCCACATgcagtggctcacac--------------------------------------------------------------------------ctgtaatcccaggattttgggaggctgaggagggtgggttgcctgagtccagaagttcaagaccagcctagacaacatgttcaaagcccatttctatcaaaacaaaaaaat-tagccaggcatggtggcacccgcctgtagttccagctactggtggggctgaggtgggagaatggcttaagtctggaggtaagagagtggagattgcagtgagccgagctcacgccattgcactgcagcctgggcaacagagcaagatcctgtctcaaaaagaaaaagaaaaaaagaaaCGGAA-----AGAAATGAGGTACTGAGAAACTAGCAAAGCTTCGCCTGGCTGTCTGGAGACAGCCCTTTTGTGGTCCCCAGCACACTTCACAGGTTCTAGGCTGGCCA--CTATGGCCTCTGTACTGTGTGTTTAGACCCAGGCTCTGTGGGAAGGGCCCCATGAGACCCAGTAGAACAGGGTAGCTGGCCTGACAAACATCCCTCCATTTCTCTGGCTGCAGCTTGGGAATAGGCCCAGACAGCATGTCCAGGAAACGCCAGACAACCTCACTATATCCTGTGAGACAGGCCCGGTGGGCCTTG----AAGGGGTGAGCATGACGCTGGGCACCCAGAGCCTGAGAGCAACTGTCCCTCCCTGTGCCCTGGAGGAGGGGCCTGTC-----------CCTAGGGCCTGGCCTGGCGTTGTAGACGTGGGGAGAGAAGGGACTGTGGACTCAGGAAGGGGCATTGGTATGGGACTTTGAGCACCACTGCTCAGGGGACATGAATGACAGGGTGGGAGGCATCTTCCATTTCTACCCTAAGCACAGCACCCCTTTGACTCCTGAGGGCCGTGAGGAGTCCTCTCCCCagagctttttata-gatcctgtgtatgagtccatcagaggtgagatttgcaaatacttgctccagcctgggacttgtcttttcattctccccacagggtctttcagagtgcacacatcattgtgatgaaattcaattgatca-tgctttttccttgtatgcatcatgcttttggtgcttatctaacaaatatttctctaatccaaagtcacactaatatctacctttttccttatgcaaattttaaagttttaggccttacattttggtttatgatacattttgaataatggtgccatgta-----tgaagtctttaatatgcatatctaattgttctaatagtatttgttgctaagattgtcttttctccactgaatttgctgtacaccttttgaaaaacaattgaatatatatgtgatggtctattctggactctgtattctgttctgttgatctatttgtctagcctcttaccagtaccataccgtctgaatttctgaaccgttacaataagtcttgaagttaggtact-ttagccatcttacttaattcttcttttttag-----------agggtttctt-tttttattctaggttcactgcattgccataCACAGAAACACGTGCCCTTGAGCacacatacatatgcaatacaaatatacatatgcaacacaaatataaatataGGCACAGAatgacaaagtgaaatttatcccaggaatgcaaggctgcttcaacattaaaaatgggcccatataacctaccatattaacagataaaaagacaacagcacatcattatttcagtatatttagaaaaagcattagacaaaatccaacaaccttataaaaacttccagtctatttctattcctaaaaactaggaatagaagtgaattttcctaaactgataaaaggcacctacaaaacctctgtagttgatgtttag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2681115 2546 -   2996164 GGAGTTCCAGTGACATCACTCATTCATGACAGTCTGTACAAAGCATCCCTGAGAGGGTCTGCTGTCACCTGTGCCTACTGTCCCTTGGTGGCTGGTCTCCGGCAGccctccctcccttTCTTCCCTCCCTCTCTCCCCACATCCCTCCCTCCCTCTCTCC-TTCTTCCCT----TG--TCCCTCATCCTTCTTTCCATCTCATCTCCTCTCAGTATCTGGCAATCCCAGGTCCTGAGCCTGTGCCAAGGCGGGACACAAAGGACACCACTGACAACAGGCCAGGTGAC-TAGCGGGGTCAGGGGAGCCTTGTGGAGTCAGAGTGGATGGGGAGGGGCTCATCTGTGCAGCACAGGACt---------------------------------gt--gtgtgtccctgtgtgtgcacatgtgtatgtgtatgta----------tgtgtgtgtgtgtgtgtgtgcctgtgCACCC--GTTTACTCAGTTCTGCTGTAAGTCCATGTCCATGACCCCAGAAGATCCCAGGTATGT-CCTCACTGACATCTGCTGAGATCAAGCATGGCCCCTGCTGGTAGTTATTGCACTGTGTGATGCCATCCTCGGGACCTCAGAGCAATAGAAATTAATGAACCCCTTTAGGCTTCTCTTTCCAATGGGACATAAAGAAGTTACACGGACAGAAGTTATATCCTGTTTTCTTTCCATTGACTCTTTTACCATCTTTCTCCTCTTACTGATTTTGAATGAAGGGGGTTTTTCATGAGGGTAAGGTAACTGGCAAGAAATGAAGTAACAGCCACATgcagtggctcacac--------------------------------------------------------------------------ctgtaatcccaggattttgggaggctgaggagggtgggttgcctgagtccagaagttcaagaccagcctagacaacatgttcaaagcccatttctatcaaaacaaaaaaat-tagccaggcatggtggcacccgcctgtagttccagctactggtggggctgaggtgggagaatggcttaagtctggaggtaagagagtggagattgcagtgagctgagctcacgccattgcactgcagcctgggcaacagagcaagatcctgtctcaaaaagaaaaagaaaaaaagaaaCGGAA-----AGAAATGAGGTACTGAGAAACTAGCAAAGCTTCGCCTGGCTGTCTGGAGACGGCCCTTTTGTGGTCCCCAGCACACTTCACAGGTTCTAGGCTGGCCA--CTATGGCCTCTGTACTGTGTGTTTAGACCCAGGCTCTGTGGGAAGGGCCCCATGAGACCCAGTAGAACAGGGTAGCTGGCCTGACAAACATCCCTCCATTTCTCTGGCTGCAGCTTGGGAATAGGCCCAGACAGCATGTCCAGGAAACGCCAGACAACCTCACTATATCCTGTGAGACAGGCCCGGTGGGCCTTG----AAAGGGTGAGCATGATGCTGGGCACCCAGAGCCTGAGAGCAACTGTCCCTCCCTGTGCCCTGGAGGAGGGGCCTGTC-----------CCTAGGGCCTGGCCTGGCGTTGTAGACGTGGGGAGAGAAGGGACTGTGGACTCAGGAAGGGGCATTGGTATGGGACTTTGAGCACCACTGCTCAGGGGACATGAATGACAGGGTGGGAGGCATCTTCCATTTCTACCCTAAGCACAGCACCCCTTTGACTCCTGAGGGCCGTGAGGAGTCCTCTCCCCagagctttttata-gatcctgtgtatgagtccatcagaggtgagatttgcaaatacttgctccagcctgggacttgtcttttcattctccccacagggtctttcagagtgcacacatcattgtgatgaaattcaattgatca-tgctttttccttgtatgcatcatgcttttggtgcttatctaacaaatatttctctaattcaaagtcacactaatatctacctttttccttatgcaaattttaaagttttaggccttacattttggtttatgatacattttgaataatggtgccatgta-----tgaagtttttaatatgcatatctaattgttctaatagtatttgttgctaagattgtcttttctccactgaatttgctgtacaccttttgaaaaacaattgaatatatatgtgatggtctattctggactctgtattctgttctgttgatctatttgtctagcctcttaccagtaccatagcgtctgaatttctgaaccgttacaataagtcttgaagttaggtact-ttagccatattacttaattcttctttgttgg-----------agggtttctt-tttttattctaggttcactgcattgccataCACAGAAACACGTGCCCTTGAGCacacatacatatgcaatacaaatatacatatgcaacgcaaatataaatataGGCACAGAatgacaaagtgaaatttatcccaggaatgcaaggctgcttcaacattaaaaatgggcccatataacctaccatattaacagataaaaagacaacagcacatcattatttcagtatatttagaaaaagcattagacaaaatccaacaaccttataaaaacttccagtctatttctattcctaaaaactaggaatagaagtgaattttcctaaactgataaaaggcacctacaaaacctctgtagttgatgtttag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     433091 2557 +    766320 GGAGTTCCAGTGACATTGCTCATTCATGACAGTCTGTACAAAGCATCCTTGAGAGGGTCTGCTGTCACCTGTGCCTACTGTCCCTTGGTGGCTGGTCTCCAGCAGccctccctccctttcttccctccctccctccccatatccctccctccctctctc----cttccct----tg--tccctcatccttctttccatctcatctcctcTCAGTATCTGGCAATCCCACGTCCTGAGCCTGTGCCAAGGCGGGACACAAAGGACACCACTGACAACAGGCCAGGTGAC-TAGCGGGGTCAGGGGAGCCTTGTGGAGTCAGAGTGGATGGGGAGGGGCTCATCTGTGCAGCACAGGACT---------------------------------GT--GTGTGTCCCTGCGTGTGCACatgtgtatgtgtatgtgtatgtgtatatgtgtgtgtgtgtgtgtgtgCCTGTGCACCCCTGTTTACTCAGTTCTGCTGTAAGTCCATGTCCATGACCCCAGAAGATCCCAGGTATGT-CCTCACTGACATCTGCTGAGATCAAGCATGGCCCCTGCTGGTAGTTATTGCACTGTGTGATGCCATCCTCGGGACCTCAGAGCAATAGAAATTAATGAACCCCTTTAGGCTTCTCTTTCCAATGGGACATAAAGAAGTTACATGGACAGAAGTTATATCCTGTTTTCTTTCCATTGACTCTTTTACCATTTTTCTCCTCTTACTGATTTTGAATGAAGGGGGTTTTTCATGAGGGTAAGGCAACCGGCAAGAAATGAAGTAACAgccacgtgcagtggctcacac--------------------------------------------------------------------------ctgtaatcctaggattttgggaggctgaggagggtgggttgcctgagtccagaagttcaagaccagcctagacaacatgttcaaagcccatttctaccaaaacaaaaaaat-tagccaggcgtggtggcacgcgcctgtagttccagctactggtggggctgaggtgggagaatggcttaagtctggaggtgagagagtggagattgcagtgagtcgagctcatgccattgcactgcagcctgggcaacagagcaagatcctgtctcaaaaacaaaaagaaaaaaagaaaaggaa-----aGAAATTAGGTACTCAGAAACTAGCAAAGCTTCGCCTGGCTGTCTGGAGACAGCCCTTGTGTGGTCCCCAGCACACTTCACAGGTTCTAGGCTGGCCACCCTGTGGCCTCTGTACTGTGTGTTTAGACCCAGGCTCTGTGGGAAGGGCCCCATGAGACCCAGCAGAACAGGGTAGCTGGCCTGACAAACATCCCCCCATTTCTCTGGCTGCAGCTTGGGAATAGGCCCAGACAGCATGTCCAGGAAACGCCAGACAACCTCACTCTATCCTGTGAGACAGGCCCGGTGGGCCTTG----AAGGGGTGAGCATGACGCTGGGCACCCAGAGCCTGAGAGCAACTGTCCCTCCCTGTGCCCTGGAGGAGGGGCCTGTC-----------CCTAGGGCCTGGCCTGGCGTTGTAGACGTGGGGAGAGAAGGGACTGTGGACTCAGGAAGAGGCATTGGTATGGGACTTTGAGCACCACTGCTCCGGGAACATGAATGACAGGGTGGGAGGCATCTTCCATTTCTACCCCAAGCACAGCGCCCCTTTGACTCCTGAGGGCCGTGAGGAGTCCTCTCCCCagagctttttata-gatcctttgtatgagtccatcagaggtgagatttgcaaatacttgcttcagcctaggacttgtcttttcattctccccacagggtctttcagagtgcacacatcattgtgatgaaattcaattgatca-tgttttttccttgtatgcatcatgcttttggtgcttatctaacaaatatttctctaatccaaagtcacactaatatctacctttttccttatgcaaattttaaagttttaggccttacattttggtttatgatacattttgaataatggtgccatgta-----tgaagtttttaatatgcatatctaattgttctaatagtgtttgttgctaagattgtcttttctccactgaatttgctgtacaccttttgaaaaacaattgaatatatatgtgatggtctattctggactctgtattctgttctgttgatctatttgtctatcctcttaccactaccacactgtctgaatttctgaacctttacaataagtcttgaagttaggtact-ttagccatcttacttaattcttcttttttag-----------agggtttctt-tttttatgctaggttcactgcattgccataCACAGAAACACGTGCCCTTGAGCACACatacatatgcaatacaaatatacatatgcaacacaaatataaatataGGCACAGAatgacaaagtgaaatttatcccaggaatgcaaggctgcttcaacattaaaaatgggcctgtataacctaccatattaacagataaaaagacaacagcacatcattatttcagtatatttagaaaaagcattagacaaaatccaacaaccttataaaaacttccagtctatttctattcctaaaaactaggaatagaagtgagttttcctaaactgataaaaggcacctacaaaacctctgcagttgatgtttag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28891315 2543 -  71996105 GAAGTTCCAGTGACATTGCTCATTCATGACAGTCTGTACAAAGCATCCCTGAGAGGGTCTCCTGTCACCTGTGCCTACTGTCCCTTGGTGGCTGGTCTCCGGCAGccctcccttcctttcttccctccctccctccccacatccctccctccctctttcctttcttccct----tg--tccctcatccttctttccatctcat---ctctcAGTATCTGGCAATCCCAGGTCCTGAGCCTGTGCCAAGGTGGGACACAAAGGACACCACTGACAACAGGTCAGGTGAC-TAGCGGGGTCAGGGGAGCCTTGTGGAGTCAGAGTGGATGGGGAGGGGCTCATCTGTGCAGCCCAGGACt---------------------------------gt--gtgtgtccctgtgtgtgcacatgtgtatgtgtatg--------------tatgtgtgtgtgtgtgtgcctgtgCACCCCTGTTTACTCAGTTCTGCTGTAAGTCCATGTCCATGACCCCAGAAGATCCCGGGTATGT-CCTCACTGACATCTGCTGAGATCAAGCATGGCCCCTGCTGGTAGTTATTGCACTGTGTGATGCCATCCTCGGGACCTCAGAGCAATAGAAATTAATGAACCCCTTTAGGCTTCTCTTTCCAATGGGACATAAAGAAGTTACATGGACAGAAGTTATATCCTGTTTTCTTTCCATTGACTGTTTTACCATCTTTCTCCTCTTACTGATTTTGAATGAAGGGGGTTTTTCATGAGGGTAAGGTAACTGGCAAGAAATGAAGTAACAgccacgtgcagtggctcacac--------------------------------------------------------------------------ctgtaatcccaggattttgggaggctgaggagggtgggttgcctgagtccagaagttcaagaccagcctagacaacatgttcaaagcccatttctaccaaaacaaaaaaat-tagctaggcgtggtggcacgcgcctgtacttccagctactggtggggctgaggtgggagaatggcttaagtctggaggtaagagagtggagattgcagtgagctgagctcacaccattgcactgcagcctgggcaacagagcaagaccctgtctcaaaaataaaaagaaaaaaagaaaCGGAA-----AGAAATGAGGTACTGAGAAACTAGCAAAGCTTCGCCTGGCTGTCTGGAGACAGCCCTTGTGTGGTCCCCAGCACACTTCACAGGTTCTAGGCTGGCCACCCTGTGGCCTCTGTACTGTGTGTTTAGACCCGGGCTCTGTGGGAAGGGCTCCATGAGACCCAGCAGAACAGGGAAGCT-GCCTGACAAACATCCTTCCATTTCTGTGGCTGCAGCTTGGGAATAGGCCCAGACAGCATGTCCAGGAAACGCCAGACAACCTCACTCTATCCTGTGAGACAGGCACGGTGGGCCTTG----AAGGGGTGAGCATGAAGCTGGGCACCCAGAGCCTGAGACCAACTGTCCCTCCCTGTGCCCTGGAGGAGGGGCCTGTC-----------CCTAGGGCCCGGCCTGGCGTTGTAGACGTGGGGAGAGAAGGGACTGTGGACTCAGGAAGGGGCATTGGTATGGGACTTTGAGCACCACTGCTCAGGGGACATGAATGACAGGGTGGGAGGCATCTTCCGTTTCTGTCCTAAGCACAGCACCCCTTTGACTCCTGAGGGCCGTGAGGAGTCCACTCCCCagagctttttgta-gatcctgtgtatgagtccatcagaggtgagatttgcaaatacttgctccagcctgggacttgtcttttcattctccccacagggtctttcagagtgcacacatcattgtgatgatattcaattgatca-tattttttccttgtatgcatcatgcttttggtgcttatctaacaaatatttctctaatccaaagtcacactaatgtctacctttttccttatgcaaattttaaagttttaggccttacattttggtttatgatacattttgaataatggtgccatgta-----tgaagtttttaatatgcatatctaattgttctaatagtatttgttgctaagattgtcttttctccactgaatttgctgtacaccttttgaaaaacaattgaatatatatgtgatggtctattctggactctgtattctgttctgttgatctatttgtctagcctcttaccaataccatactgtctgaatttctgaacctttacaataagtcttgaagttaggtact-ttagccatcttacttaattcttcttttttaG-----------AGGGTTTCTT-TTTTTATTCTAGGTTCACTGCATTGCCATACACAGAAACACGTGCCCTTGAGCacacatacatatgcaatacaaatatacatatgcaacacaaatataaatataGGCACAGAatgacaaagtgaaatttatcccaggaatgcaaggctgcttcaacattaaaaatgggcccgtataacctaccatattaacagataaaaagacaacagcacatcattatttcagtatatttagaaaaagcattaggcaaaatccaacaaccttataaaaacttccagtctatttctattcctaaaaactaggaatagaagtgaattttcctaaactgataaaaggcacctacaaaacctctgtagttgatgtttag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      66839 2546 +    290775 GGAGTTCCAGTGACATTGCTCATTCATGACAGTCTGTACAAAGCATCCCTGAGAGGGTCTGCTGTCACCTGTGCCTACTGTCCCTTGGTGGCTGGTCTCCGGCAGccctccctccctttcttccctccctccctccccatatccctccctccctctctcc-ttcttccct----tg--tccctcatccttctttccatctcatctcctcTCAGTATCTGGCAATCCCAGGTCCTGAGCCTGTGCCAAGGCGGGACACAAAGGACACCACTGACAACAGGCCAGGTGAC-TAGCAGGGTCAGGGGAGCCTTGTGGAGTCAGAGTGGATGGGGAGGGGCTCATCTGTGCAGCACAGAACT---------------------------------GT--GTGTGTCCCTGTGTGTGCACAtgtgtatgtgtgtg--------------tgtgtgtgtgtgtgtgtgCCTGTGCACCCCTGTTTACTCAGTTCTGCTGTAAGTCCATGTCCATGACCACAGAAGATCCCAGGTATGT-CCTCACTGACATCTGCTGAGATCAAGCATGGCCCCTGCTGGTAGTTATTGCACTGTGTGATGCCATCCTCGGGACCTCAGAGCAATAGAAATTAATGAACCCCTTTAGGCTTCTCTTTCCAATGGGACATAAAGAAGTTACATGGACAGAAGTTATATCCTGTTTTCTTTCCATTGACTCTTTTACCATTTTTCTCCTCTTACTGATTTTGAATGAAGGGGGTTTTTCATGAGGGTAAGGTAACTGGCAAGAAATGAAGTAACAgccacgtgcagtggctcacac--------------------------------------------------------------------------ctgtaatcctaggattttgggaggctgaggagggtgggttgcctgagtccagaagttcaagaccagcctagacaacgtgttcaaagcccatttctaccaaaacaaaaaaat-tagccaggcgtggtggcacgcacctgtagttccagctactggtggggctgaggtgggagaatggcttaagtctggaggtgagagagtggagattgcagtgagccgagctcatgccattgcactgcagcctgggcaacagagcaagatcctgtctcaaaaataaaaagaaaaaaagaaaaggaa-----aGAAATGAGGTACTCAGAAACTAGCAAAGCTTCGCCTGGCTGTCTGGAGACAGCCCTTGTGTGGTCCCCAGCACACTTCACAGGTTCTAGGCCGGCCACCCTGTGGCCTCTGTACTGTATGTTTAGACCCAGGCTCTGTGGGAAGGGCCCCCTGAGACCCAGCAGAACAGGGTAGCTGGCCTGACAAACATCCCCCCATTTCTCTGGCTGCAGCTTGGGAATAGGCCCAGACAGCATGTCCAGGAAACGCCAGACAACCTCACTCTATCCTGTGAGACAGGCCCGGTGGGCCTTG----AAGGAGTGAGCATGACGCTGGGCACCCAGAGCCTGAGAGCAACTGTCCCTCCCTGTGCCCTGGAGGAGGGGCCTGTC-----------CCTAGGGCCTGGCCTGGCGTTGTAGACGTGGGGAGAGAAGGGACTGTGGACTCAGGAAGAGGCATTGGTATGGGACTTTGAGCACCACTGCTCCGGGGACATGAATGACAGGGTGGGAGGCATCTTCCATTTCTACCCCAAGCACAGCACCCCTTTGACTCCTGAGGGCCGTGAGGAGCCCACTCCCCagagctttttata-gatcctgtgtatgagtccatcagaggtgagatttgcaaatacttgcttcagcctgggacttgtcttttcattctccccacagggtctttcagagtgcacacatcattgtgatgaaattcaattgatca-tgttttttccttgtatgcatcatgcttttggtgcttatctaacaaatatttctctaatccaaagtcacactaatatctacctttttccttatgcaaattttaaagttttaggccttacattttggtttatgatacattttgaataatggtgccatgta-----tgaagtttttaatatgcatatctaattgttctaatagtgtttgttgctaagattgtcttttctccactgaatttgctgtacaccttttgaaaaacaattgaatatatatgtgatggtctattctggaccctgtattctgttctgttgatctatttgtctagcctcttaccaacaccacactgtctgaatttctgaacctttacaataagtcttgaagttaggtact-ttagccatcttacttaattcttcttttttag-----------agggtttctt-tttttatgctaggttcactgcattgccataCACAGAAACACGTGCCCTTGAGCACACatacatatgcaatacaaatatacatatgcaacacaaatataaatataGGCACAGAatgacaaagtgaaatttatcccaggaatgcaaggctgcttcaacattaaaaatgggcccatataacctaccatattaacagataaaaagacaacagcacatcattatttcagtatatttagaaaaagcattagacaaaatccaacaaccttataaaaacttccagtctatttctattcctaaaaactaggaatagaagtgaattttcctaaactgataaaaggcacctacaaaacctctgcagttgatgtttag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2496748 2619 -   3067355 GGAGTTCCAGTGACATTGCTCATTCACAACAGTCTGTACAAAGCATCCCTGAGAGGGTCTGCTGTCACCTGTGCCTACTGTCCCTTGGTAGCTGGTCTCCGGCAGccctcccttcctttcttccctccctctttccccacatccctccctccctctctcccttcttcctt----tg--tccctcatccttctttccatcTCATCTTCTCTCAGTGTCTGGCAATCCCAGGTCCTGAGCCTGTGCCAAGGTGGGACACAAAGGACACCACTGACAACAGGCCAGGTGAC-TAGCGGGGTCAGGGGAGCCTTGTGGAGTCAGAGTGGATGGGGAGGGGCTCATCTGTGCAGCCCAGGACt---------------------------------gt--gtatgtccctgtgtgtgcacatgtgcatgtgtatgta------------tgtgtgtgtgtgtgtgtgcctgtgCATCCCTGTTTACTCAGTTCTGCTGTAAGTCCATGTCCATGACCCCAGAAGATCCCAGGTATGT-CCTCACTGACATCTGCTGAGATCAAGCATGGCCCCTGCTGGTAGTTACTGCACTGTGTGATGCCATCCTTGGGACCTCAGAGCAATAGAAATTAATGAACCCCTTTAGGCTTCTCTTTCCAATGGGACATAAAGAAGTTACATGGACAGAAGTTATATCCTGTTTTCTTTCCATTGACTCTTTTACCATCTTTCTCCTCTTACTGATTTTGAATGAAGGGGGTTTTTCATGAGGGTAAGGTAATTGGCAAGAAATGAAGTAACAgccaggtgcagtggctcacacctgtaatcccaggattttgggaggccgagTAATTGGCAAGAAATGAAGTAACAgccaggtgcagtggctcacacctgtaatcccaggattttgggaggccgaggagggtgggttgcctgagtccagaagttcaagaccagcctagacaacatgttcaaagcccatttctactaaaac-aaaaaat-tagccaggcgtggtggcacgcgcctgtagttccagctactggtggggctgaggtgggagaatggcttaagtctggaggtgagagagtggagattgcagtgagccgagctcatgccattgcactgcagcctgggcaacagagcaagaccctgtctcaaaaataaaaagaaaaaaagaaacggaa-----agaaaTGAGGTACTGAGAAACTAGCAAAGCTTCACCTGGCTGTCTGGAGACAGCCCTTGTGTGGTCCCCAATACACTTCACAGGTTGTAGGCTGGCCACCCTGTGGCCTCTGTACTGTGTGTTTAGACCCAGGCTCTGTGGGAAGGGCCCCATGAGACCCAGCAGAACAGGTTAACTGGCCTGACAAACATCCCTCCATTTCTCTGGCTGCAGCTTGGGAATAGACCCAGACAGCATGTCCAGGAAATGCCAGACAACCTCACTATATCCTGTGAGACAGGCCCAGTGGGCCTTG----AAGGGGTATGCATGAAGCTGGGAACCCAGAGCCTGAGACCAACTGTCCCTCCCTATGCCCTGGAGGAGGGGCCTGTC-----------CCTAGGGCCTGGCCTGGCATTGTAGATGTGGGGAGAGAAGGGACTGTGGACTCAGGAAGGGGCATTGGTATGGGACTTTGAGCACCACTGCTCAGGGGACATGAATGACAGGGTGGGAGGCATCTTCCATTTCTGCCCTAAGCACAGCACCCCTTTGACTCCTGAGGGCCGTGAGGAGTCCACTCCCCagagctttttata-gatcctgtgtatgactccatcagaggtgagatttgcaaatacttgctccagcctgggacttgtcttttcattctccccacagggtctttcagagtgcacacatcattttgatgaaattcaattgatca-ttttttttccttgtatgcatcatgcttttggtgcttatctagcaaatatttctctaatccaaagtcacactaatatctacctttttccttatgcaaattttaaagttttaggccttatattttggtttatgatacattttgaataatggtgccaggta-----tgaagtttttaatatgcatatctaattgttctaatagtatttattgctaagattgtcttttctccactgaatttgatgtacaccttttgaaaaacaattgaatatatatgtgatggtctattctggactctgtattctgttctattgatctatttgtctagcctcttaccaataccatactatctgaatttctgaacctttacaataggtcttgaagttaggtactgttagccatct---ttaattcttcttttttag-----------agggttt-tt-tttttattctaggctcactgcattgccataCACAGAAACACGTGCCCTTGAGCATACatacatatgcaatacaaatatacatatgcaacacaaatataaatataGGCACAGAatgacaaagtgaaatttatcccaggaatgcaaggttgcttcaacattaaaaatgggccagtataacctaccatattaacagataaaaagacaacagcacatcattatttcagtatatttagaaaaagcattagacaaaatccaacaaccttataaaaacttccagtctatttctattcctaaaaactaggaatagaagtgaattttcctaaactgataaaaggcacctacaaaacccctgtagttgatgtttag
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            69462 2557 -    242197 GGAGTTCCAATGACATTGGACATTCATGACGGTCCATACAAAGCATCCCT--GAGGGTCTGCTGTCACCTGTGTCGACTGTTCTTGGGTAACTGGTCTCAGGCAGCcctt----cctttcttccctccctccctccttccatctctccatccctctcttcctctttcccttcctTGCTTTCCTCATCCTTCTTTCCATCTCATCTCCTTTCAGCATCTGGCAATCCCAGGTCCCAAGCCTATGTTAAGAAGGGACATAAAGGACACCACTGAGAACAAGCCAGGTGAC-TAGAGGGGTCAGGGGAGCCTTGTGGAGTCAGAGTGGATGGGGAGCGGTTTATCTGTGCAGCCCAGGACTGATGCCCCAGGAGCAATCTAGAACAGTGCAGAAgt--gtgtgtccctgtatgtgcatatgtgcacatgtgtgca------------tgtgtatgagtgtatgtgcctgtgCACTCCTGTTTACTCAGTTCTGCTCTAAATCCATGCCCATAACCCCAGAAGATCCCAGCTATGC-CCTCGCTAATGTCTGCTGTGATCAAGCATGGCCCCTGCTGGTGGTTATTGCACT-TGTGATGCCATCCTCGAGACTTCCGAGCAATAGAAACCAATGGACCCCTTTAGGCTTTTCCTTTCAACGAGACAT----AAGTTATACGGACAGAAGTTATATTCTATTTTCTTTCCATTGATTGTTTTACCATCTTTCTCCTCTTACTGATTTTGAATGAAGGGGGTTTTTCATGGGGTTAAGGTAACTGGCAAGAAACAAGGTAACAgccaggtgcagtggctcatgc--------------------------------------------------------------------------ctgtaatcctagcatttggggatgtcgaggagggtgggttgcctgagcccagaagttcaagaccagcctagacaacatagcaaaagcccatctctaccaaaacaaaaaaat-tagccaggtttggt-gcacacatctgtagttccagctactcacggggctgaggtgggagaatggcttgagcctgggggtggaaaagtggagattacagtgacctgagattgcactattgcattgcagcctgggcagcagagtaagaccttgtctc-a----aaaaataaata----------------agaaaTGAGGTACCGAGAAACTAGCCAAGCTTCACCTGGCTGTCTGGAGACAGCCCTTGTGTGGTCCCCAGCACACTTCGCAGGTTCTGGGCTGGCCACTCTGTGGCCTCTGTACTGTGTGTATAGACCCAGGCTCTGTGAGAAGGGCCCCATGAGACCCAGCAAAACAAGGTACCTGGTCTGACAAACATTCCTCCATTTCTCTGGCTGCAGCTCAAGAATAGGCCCAGACAGCATGTCCAGGAGATGCCA---AACCTTACTATATCCTGTCAAATAGGTCCAGTGGACCTTG----AAAGAGTTAGCATGAAGCTGGCCACCCAGAGCCGGAGACCAGCTGTCCCTCCCTGTGCCCTGGAGGAAGGGCCTGTCCCAGGAAGACTCCTAGGGCTTGGCTCATCAGTGTAGATGTGAGGAAACAAGAGTCTGTAGAC--AGGAAGGGGTATTGGTAGGGGACTTTGAACACCACTGCTCAGAGGACATGAATGGCAGGGTGGGAGGCATTTCCCATTTCTGCCCTGAGCACAGCACCCCTTTGACTCCTGAGGGCCATGAGGAGTCCACTCCCCagagcctttgataggatcctgcataagagtccatcagagataagatttgcaaatgcttcctccagcctggggcttgtcttttcattctccccataggatctttcagagtgcacacatcattttaatgaagttcaatta-----ttttttttccttttatacatcatgcttttggtatatatctaagaaatatttctctaatccaaaatcacactgatatcctcctttttccttatgtaaattttaaagttttaggccttacattttggtttatgatacattttgaataacagtgccatgtg-----taaagtttttaatatgcatctctaattgttcttacagtatttgttgctaggattttcttttttccactgaatttgctgtacatcttttgaaaaccaattgaatatatatgtgaggatctattctggactc-----tctcttttattgatctatttgtctagcctcttaccaataccatactgtccgaatttctgaacctttacaataagtcttgaagttaggtactgtaacctctctgacttgattcttctttttta------------gttttttctt-tttctattttaggtcaactgcattgccacaCACAGAAACATGTGACCCtgtacatacatacatatccaacacaaatacatatatgcaacacaaatataaagatacgcacagaatgaccaagtgaaatttatcccaggaatgcaaggttgcttcaacattaaaaacaggcaagtataactcatcatattaatagattaaaagacaaaggcacatcattatttcagtacatttggaaaaaggattagacaaaatccaacaacattataaaaacttccagcctgtttctattcctaaaaactaagaatagaagtgaa-tttcttaaaatgataaaaggcacctacacaaactttatggttgatacttag
i saiBol1.JH378357         C 0 I 503
s cebCap1.NW_016108310v1     102108 2499 +    106389 GGAGTTCCAATGACATTGGACATTCATGACAGTCCATACAAATCATCCCT--GAGGGTCTGCTGTCACTTGGGTCTACTGTCCTTGGGTAACTGGTTTCAGGCAGCcctt----cttttcttcccaccctccc----tccatctctccatccctctcctcctctttctcttccttgcttccctcatccttctttc-----cATGTCCTCTCAGCATCTTGCCATCCCAGGTCCCAAGCCTGTGCTAAGAAGGGACACAAAGGACACCACTGATAACAAGCTAGGTGAC-TAGTGGGATCAGGGGAGCCTTGTGGAGTCAGAGTGGATGGGGAGCGGTTTATCTGTGCAGCCCAGGACTGATGCCTCTGGAGCAGTCTAGAACAGTGCAGAATTTCGTGTGTCGCTGTGTGTGCATATGTCCGTGTGCATGCA------------TGTGTATGAGTGTATGTGCCTGTGCCCTCGTGTTTACTGAGTTCTGCTCTAAATCCATGACCATAACCCCAGAAGATCCCTGCTATGC-CTTCGCTAATGTCTGCTGTGATCAAGCATGTCCCCTGCTGATAGTTATTCCACT-TGTGATGCCATTCTCGAGGACTCCAAGCAATAGAAACCAATGGACCCCTTTGGGCTTTTCTTTCCAATGAGACAT----AAGTTATATGGGCAGAAGTTATATTCTATTTTCTTTCCATTGATTGTTTTACCATCTTTCTCCTCTTACTGATTTTGAATGAAGGGGGTTTTTCATGGGGTTAAGGTAACTGGCAAGGAATAAGGTAACA-ccaggtgcagtggctcatgc--------------------------------------------------------------------------ctataatcccagcattttgggatgccaaggagggtgggttgcctgagcccagaagttcaagacaagcctagacaacatggcaaaagcccatctctaccaaaacaaaaaaatatagccaggtgtggtggcatgcacctgtagttccagctactcacggggttgaggtgggagaatggcttgagcctgggggtggaaaagtggagattacagtgacctgagattgcaccattgcactacagccttggcaacagagcaagaccttgtctcaa----aaaaataaata----------------agaaaTGAGGTACCAAGAAACTAGCAAAGCTTCACCTGGCTGTCTGGAGACAGCCCTTGTGTGGTCCCCAGCACACTTTGCAGGTTCTGGGCTGGCCACTCTGTGGTCTCTGTACTCTGTA--------------CTGT------------------------------------------------ACATCCCTTCATTTCCCTGGCTGCACCTCAGGAATAGGCCCAGACAGCATGTCCAGGAGGTGCCAGACAACTTTACTATATCCTGTCAGACAGGACCAGTGGACCTTG----AAAGAGTTAGCATGAAGCTGGCCACCCAGATCCTGAGACCAACTGTCCCTCCCTGTGCCCTGGAGGAGGGACCTGTCCCAGGAAGGCCCCTAGGGCTTGGCCTGTCAGTGTAGATGTGGGGAAAGAAGAGTGTAGAGTT--AGGAAGAGGTATTGGTAGGGGACTTTGAATACCGCTGCTCAGAGGACGTGAATGACAGGGTAGGAGGCATCTCCCATTTCTGCCCTGAACACACCACCCCTTTGACTCCTGAGGGCCATGAGGAGTCCACTCCCCagagcttttgataggatcctgcataagagtccatcagaggtaagatttgcaaatgcttcctccagcctggggcttgtcttttcattctccccacaggatctttcagagtgcacatatcattttaatgaagttcaattat----ttttttttccttttatgcatcatgcttttgatatttatgtaagaaatatttctctaatccaaaatcacactgatatccacctttttccttatgtaaatttt--agttttaggccttacattttggtttatgatacattttgaataatggtgccgtgtg-----tgaagtttttaacatgcatatctaattgttcttacagtatttgttcctaggattttctt-----cactgaatttgctgtacatcttttgaaaaccagttgaatatatatgtgaggatctattctggactc-----tctgttctattgatctatttgtctagcctcttgccaataccatattgtccgaatttctgaacctttacaataagtcttgaagttaggtactgtagtctctctaacttgattcttcttttttagttgttgttgttgTTGTTGTTT-TTTCTATTTTAGGTCAACTGCATTGCCACACACAGAAACATGTGGCCCtgtacatacatacatatccaacacaaatacgcatatgcaacacaaatataaagatatgcacagaatgaccaagggaaatttattccaggaatgcaaggctgcttcaacattaaaaacaggcaagtataactcatcatattaatagattaaaagacaaaggcacatcattatttcagtacatttggaaaaagcattagacaaaatccaacaacattataaaaacttccagcctatttctattcctaaaaactaagaatagaagtgaa-tttcttaaaatgataaaaggcacctacacgaactttatagttgatatTTAG
i cebCap1.NW_016108310v1   C 0 C 0
s aotNan1.NW_018509740v1     114443 2576 -    457564 GGAGTGCCAATGACATTGGACATTCATGACAGTCCATACAAAGCATCCCT--GAGGGTCTGCTGTCATCTGTGTCTACTGTCCTTGGGTAACTGGCCTCAGGCGAccctc----cctttcttccctccctccctccctccatctctccatccctctcttcctctttccct---------------tccttctttccatctcatctcctctCAGCATCTGGCAATCCCAGGTCCTAAGCCTGTGCTAAGAAGGGACACAAAGGACACCACTGACAACAAGCCATGTGAC-TAGCGGGGTCAGGGGAGCCTTGTGGAGTCAGAGTGGATGGGGGGCAGTTTATCTGTGCAGCCCAGGACTGATGCCCCTGGAGCAGTCTAGAACAGTGCAGAAgt--atgtgtccctgtgtgtgcatatgtgcatgtgcgtgca------------tgtgtatgcgtgtatgtgcctgtgCACCCCTGTTTACTCAGTTCTGCTCTAAATCCATGCCCATAACCCCAGAAGATCCCGGCTATGC-CCTCGCTAATGTCTGCTGTGATCAAGCATGGCCCCTGTTGGTAGTTATTGCACT-TGTGATGCCATCCTCGAGGCCTCAGAGCAATAGAAACCAATGGACCCCTTTAGGCTTTTCTTTCCAATGAGATAT----AAGTTATATGAACAGAAATTATATTCTATTTTCTTTCCATTGATTGTTTTACCATCTTTCTCCTCTTACTGATTTTGAATGAAGGGGGTTTTTCATGGGGTTAAGGTAACTGGCAAGAAATAAGGTAACAgccaggtgcagtggctcatgc--------------------------------------------------------------------------ctgtaatcccagcattttgggaggccgaggagggtgggttgcctgagcccagaagttcaagaccagcctagacaacatggcaaaagcccatctctaccaaaacaaaaaaat-tagccaggtgtggtggcacgcacctgtagttccagctactcatggggttgaggtgggcaaatggcttgagcctgggggtggaaaagtggagattactgtgacctgagattgcaccattgcactgcagcctgggcaacagaccaagaccctgtctc-a----aaaaataaataaataaataaataaaaGAGAAATGAGGTACCGAGAAACTAGCAAAGCTTCACCTGTCTGTCTGGAGACAGCCCTTGTGTGGTCCCCAGCACACTTTACAGGTTCTGGACTGGCCACTCTGTGGCCTCTGTACTGTGTGTATAGACCCAGATTCTGTGGGAAGGGCCCCATGAGACCCAGCAGAACAAGGTACCTGGTCTGACAAACATCCCTCCATTTCTCTGGCTGCAGCTCAGGAATAGGCCCAGACAGCATGTCCAGGAGGTGCCAGACAACCTCACTATACCCTGTTAGACAGGCCGAGTGGACCTTG----AAAGAGTTAGCATGAAGCTGGCCACCCAGAATCTGAGACCAACTGTCCTCCCCTGTGCCCTGGAGGAGGGACCTGTCCCAGGAAGACCCCTAGGGCTTGGCCTGTCAGTGTAGATGTGGGGAAAGAAGGGTCTGTAGACTTAGGAAGGGGTATTGGTAGGGGACTTTGAACACCACTGCTCAGAGGACATGAATGACAGGGTGGGAAGCATCTCCCATTTCTGCCCTGAGCACAGCACCCCTTTGACTCCTGAGGGCTGTGAGGAGTCCACTCCCCagagcttttgataggatcctacataagagtccatcagaggcaagatttgcaaatgcttcctccagcctggagcttgtctttttattctccccacaggatccttcaaagggcacatatcattttaatgaagttcaatta-----ttttttttctttttatgcatcatgcttttggtatttatctaagaaatatttctctaatccaaaatcacactgatgtccacctttttccttatgtaaattttcaagttttaggccttacattttggtttatgatacattttgaataatgatgccatgtg-----tgaagtttttaatatgcatatctaattgttcttacagtatttgttgctaagattttcttttctccactgaatttgctgtacatcttttgaaaaccaattgaacatatatgtgtggatctgtgctggactctctattctgttctattgatctatttgtgtagcctcttaccaataccatactgttagaatttctgaacctttacaataagtcttgaagttaggtactgcaacccctctgacttgattcttcttctttaGtttttt-----tttttctttt-tttctattttAGGTCAACTGCATTGCCACACACAGAAACATGGGCCCCTGTGCATACATACATATCCAACACAAATACACATATgcaacacaaatataaagatatgcacagaatgaccaagtgaaatttatcccaggaatgcaaggctgcttcaacattaaaaataggcaagtataactcatcatattaatagattaaaagacaaaagcacatcattactgcagtacatttggaaaaagcattagacaaaatccaataaccttataaaaatttccagtctatttctattcctaaaaactaagaatagaagtgaa-tttcttaaactgataaaaggcacctacacaaactttatagttgatatTTAG
i aotNan1.NW_018509740v1   C 0 I 504
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I

a score=125656.000000
s hg38.chr6_GL000254v2_alt   801778 14 +   4827813 tggacgttattctt
s panTro5.chr6             29764913 14 + 175400573 tggacgttattctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29999537 14 + 173848474 tggacgttattctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5802974 14 +   6154872 tggacgttattctt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74502528 14 + 122973662 tggacgttattctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29976271 14 + 172585720 tggacgttattctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29640209 14 - 170955103 tggacattattctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2683661 14 -   2996164 tggacgttattctt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     435648 14 +    766320 tggacgttactctt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28893858 14 -  71996105 tggacgttattctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      69385 14 +    290775 tggacgttactctt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2499367 14 -   3067355 tggacattactctt
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            72522 14 -    242197 TGGacattattctt
i saiBol1.JH378357         I 503 C 0
s cebCap1.NW_016108310v1     104607 14 +    106389 TGAACATTATTCTT
i cebCap1.NW_016108310v1   C 0 N 0
s aotNan1.NW_018509740v1     117523 14 -    457564 TGGacattattctt
i aotNan1.NW_018509740v1   I 504 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I

a score=3517423.000000
s hg38.chr6_GL000254v2_alt   801792 476 +   4827813 aatgatgaaagactggatggtttcaccccagaggaagaactaggtgaggatgtcagctctcactacttgtattcagcatcctatggagagtctagcagtgcaaagggctccttcctttagtagactcagatttccatctggagtcattattctcctgctagatggatgtcctttaccatttctcaatctgtacatctcctggtgatgatttctttcatcttttgtcaatctg-aaaacctctttattctgcctttttattggaaaacaaaattttgactgtgtaaagaattctaggttggca--tttttttcttt--aaaaaaaatacttccatacaacttgcaattttccaacaagaaatctgctttgtatctttgattctctgtacatatatgtctttttcttctctatctagctgcttgtaggaggactcagcttctcgca-------gatagacatgtatgataaagatgcagtaactacat--ca
s panTro5.chr6             29764927 477 + 175400573 aatgatgaaagactggatgctttcaccccagaggaagaactaggtgaggatgtcagctctcactacttgtattcagcatcctatggagagtctggcagtgcaaagggctccttcctttggtagactcagatttccatctggagtcattattctcctgctagatggatgtcctttaccatttcttaatctgtacatctcctggtgatgatttctttcatcttttgtcaatctg-aaaacctctttattctgcctttttattggaaaacaaaattttgactgtgtaaagaattctaggttggca--tttttttcttt-aaaaaaaaatacttccatacaacttgcaattttccaacaagaaatttgcttggtatctttgattctctgtatatatatgtctttttcttctctagctagctgcttgtaggaggactcagcttctcgca-------gatagacatgtatgataaagatgcagtaactacat--ca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             29999551 475 + 173848474 aatgatgaaagactggatgctttcaccccagaggaagaactaggtgaggatgtcagctctcactacttgtattcagcatcctatggagagtctagcagtgcaaAGGGCtccttcctttggtagactcagatttccatctggagtcattattctcctgctagatggatgtcctttaccatttctcaatctgtacatctcctggtgatgatttctttcatcttttgtcaatctg-aaaacctctttattctgcctttttattggaaaacaaaattttgactgtgtaaagaattctaggttggca---ttttttcttT--AAAAAAAATACTTCCATACAActtgcaattctccaacaagaaatctgctttgtatctttgattctctgtacatatatgtctttttcttctctagctagttgcttgtaggaGGACTCAGCTTCTCGCA-------GATAGACATGTatgataaagatgcagtaactacat--ca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5802988 476 +   6154872 aatgatgaaagactggatgctttcaccccagaggaagaactaggtgaggatgtcagctctcactacttgtattcagcatcctatggagagtctagcagtgcaaagggctccttcctttagtagactcagatttccatctggagtcattattctcctgctagatggatgtcctttaccatttctcaatctgtacatctcctggtgatgatttctttcatcttttgtcaatctg-aaaacctctttattctgcctttttattggaaaacaaaactttgactgtgtaaagaattctaggttggca--tttttttcttt--aaaaaaaatacttccatacaacttgcaattttccaacaagaaatctgctttgtatctttgattctccgtacatatatgtctttttcttctctatctagctgcttgtaggaggactcagcttctcgca-------gatagacatgtatgataaagatgcagtaactacat--ca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74502542 470 + 122973662 aatgatgaaagactggatgctttcaccccagaggaaggactaggtgaggatgtcagctctcactacttgtattcagcatcctatgcagagtccagcagtgcaaagggctccttcctttagtagactcagatttccatctggagtcattattctcctgctagatggatgtcctttaccatttctcaatctgtacatctcctggtgatgatttctttcatcttttgtctatctg-aaaacctctttattctgcctttttactggaaaat---atttcgactgtgtaaagaattctaggttggca-ttttttttcttt--aaaaaaaatatttccatacaacttgaaattttccaacaagaaatctgctttgtatctttgattctccgtacatatatgtctttttcttct----gtagctgcttgtaggaggactcagcttctcgta-------gatagacatgtatgataaagatgcagtaactacat--ca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29976285 471 + 172585720 aatgatgaaagactgggtgatttcaccccagaggaggaactaggcgaggctgtcagctctcactacttgtattcagcatcccatggagagtccagcagtgcaaagggctccttcctttagcagactcagatttccatctggagtcattattctcctgctagatggatgtcctttaccatttctcaatctatacatctcct-gtgatgatttctttcatcttttgtctatttg-aaaacctctttattctgcctttttattggaaaat---attttgactgtgtaaagaattctaggttggcatttttttttcttt-aaaaagaagtacttccatacaacttgcaattttccaacaagaaatctgctttgtatctttgattctctgtacatatatgtctttttcttct----ctaactgcttgtaggaggactcaacttctcaca-------gatagacatgtatgataaagatgcagtaactacat--ca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29640223 471 - 170955103 aatgatgaaagactgggtgctttcaccccagaggaggaactaggcgaggctgtcagctctcactacttgtattcagcatcccatggagagtccagcagtgcaaagggctccttcctttagcagactcagatttccatctggagtcattattctcctgctagatggatgtcctttaccatttctcaatctatacatctcct-gtgatgatttctttcatcttttgtctatttg-aaaacctctttattctgcctttttattggaaaat---attttgactgtgtaaagaattctaggttggcatttttttttcttt-aaaaagaagtacttccatacaacttgcaattttccaacaagaaatctgctttgtatctttgattctctgtacatatatgtctttttcttct----ctaactgcttgtaggaggactcaacttctcaca-------gatagacatgtatgataaagatgcagtaactacat--ca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2683675 470 -   2996164 aatgatgaaagactgggtgctttcaccccagaggaggaactaggcgaggctgtcagctctcactacttgtattcagcatcctatggagagtccagcagtgcaaagggctccttcctttagcagactcagatttccatctggagtcattattctcctgctagatggatgtcctttaccatttctcaatctatacatctcct-gtgatgatttctttcatcttttgtctatttg-aaaacctctttattctgcctttttattggaaaat---attttgactgtgtaaagaattctaggttggca-atttttttcttt-aaaaagaagtacttccatacaacttgcaattttccaacaagaaatctgctttgtatctttgattctctgtacatatatgtctttttcttct----ctaactgcttgtaggaggactcaacttctcgca-------gatagacatgtatgataaagatgcagtaactacat--ca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     435662 471 +    766320 aatgatgaaagactgggtgctttcaccccagaagaggaactaggcgaggctgtcagctctcactacttgtattcagcatcctatggagagtccagcagtgcaaAGGGCtccttcctttagcagactcagatttccatctggagtcattgttctcctgctagatggatgtcctttaccatttctcaatctatacatctcct-gtgatgatttctttcctcttttgtctatttgaaaaacctctttattctgcctttttattggaaaat---attttgactgtgtaaagaattctaggttggca-tttattttcttt-aaaaagaagtacttccatacaacttgcaattttccaacaagaaatctgctttgtatctttgattctctgtacatatatgtctttttcttct----ctaactgcttgtaggaggactcaacttctcgca-------gatagacatgtatgataaagatgcagtaactacat--ca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28893872 468 -  71996105 aatgatgaaagactgggtgctttcaccccagaggaggaactaggcgaggctgtcaggtctcactacttgtattcagcatcctatggagagtccagcagtgcaaagggctccttcctttagcagactcagatttccatctggagtcattattctcctgctagatggatgtcctttaccatttctcaatctatacat---ct-gtgatgatttcttccatcttttgtctatttgaaaaacctctttattctgcctttttattggaaaat---attttgactgtgtaaagaattctagattggca-ttttttttcttt-aaaaagaagtacttccatacaacttgcaattttccaacaagaaatctgctttgtatctttgattctctgcacatatatgtctttttcttct----ctaactgcttgtaggaggactcaacttctcgca-------gatagacatgtatgataaagatgcagtaactacat--ca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      69399 471 +    290775 aatgatgaaagactgggtgctttcaccccagaagaggaactaggcgaggctgtcagctctcactacttgtattcagcatcctatggagagtccagcagtgcaaagggctccttcctttagcagactcagatttccatctggagtcattattctcctgctagatggatgtcctttaccatttctcaatctatacatctcct-gtaatgatttctttcctcttttgtctatttgaaaaacctctttattctgcctttttattggaaaat---attttgactgtgtaaagaattctaggttggca-tttattttcttt-aaaaagaagtacttccatacaacttgcaattttgcaacaagaaatctgctttgtatctttgattctctgtacatatatgtctttttcttct----ctaactgcttgtaggaggattcaacttctcgca-------gatagacatgtatgataaagatgcagtaactacat--ca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2499381 469 -   3067355 aatgatgaaagactgggtgctttcaccccagaggaggaactgggcgaggctgtcagctctcactacttgtattcagcatcctatggagagtccagcagtgcaaAGGGGtccttcctttagcagactcagatttccatctggagtcattattctcctgctagatggatgtcctttaccatttctcaatctatacatctcct-gtgatgatttctttcatcttttgtctatctg-aaaacctctttattctgcctttttattggaaaat---attttgactgtgtaaagaattctaggttggca--tttttttcttt-agaaagaagtacttccatacaacttgcaattttccaacaaggaatctgctttgtatctttgattctctgtacatgtatgtctttttcttct----ctaactgcttgtaggaagactcaacttctcgca-------gacagacatgtataataaagatgcagtaactgcat--ca
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            72536 473 -    242197 aatgatgaaagactgaatgctttcaccccagatgaggaacaaggcgaggatgtcagctctcactacttctattcaacatcctacggagagtccagcagtgcaaagggctccttcctttagtacgctcagatttccatctgtagtcattattctcctgctagatggatgtcctttaccatttctcaatctgcacatctcctggtgatgatttctttcatcttttctctgtctg-aaaacccctttattttgcctttttattggaaaat---actttgactgtacaaagaattctaggttgac--ttttttttctttaaaaaaaaaatacttccatacaactcacaattttaaaataagaaatctgcttggtatctttgattctctgtatgtatatgtcttcttct-------ctagctgcttataggaggactcagcttcttagacatgtataatagacatgtatgataaagatgcagtaactacat----
i saiBol1.JH378357         C 0 C 0
s aotNan1.NW_018509740v1     117537 473 -    457564 gatgatgaaagactgaatgctttcaccccagatgaggaacaaggtgaggatgtcagctctcactacttccattcagcatcgtatggagagtccagcagtgcaaAGGGCtccttcctttagtacactcagatttccatctgtagtcattattctcctgctggat-gatgtcctttaccatttctcaatctgcacatttcctggtgatgatttctttcatcttttctctatctg-aaaacccctttgttttgcctttttattggaaaac---actttgactgtgtaaagaattctaggttgaca-ttttttttcttT--TAAAAAAATACTTCGATACAACTCACAATTTTCCAGTAAGAAATCTGCTTTGTATCTTTGATTCTCTGTACTTATACATCTTCTTCT-------CTAGCTGCTCATAGGAGGACTCAGCTTCTTAGACATATATAACAGACATGtatgataaagatgcagtaactccatag--
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I

a score=24759932.000000
s hg38.chr6_GL000254v2_alt   802268 2839 +   4827813 agtgtggtattgtccatggatggataaatagactgatggaatagagcagagggcccacagacagacccacaagagtccaactgtgattgatcaccaaggaggagcgtgatggtgaaggactgtgcttgttataatgtgctggggcctttggataaccaCTGACTAAGTGGGCCAAGTGGCCTTTTGGCTTAGGCTGAAGCAggataataataacgttatctattcatagaattgtt---aaaattacctggttttatatttgcaaagtaattagagcagtattgagacaaagggaatcttcagtgaacattTCCTCTAGTCATAGTTTTTTCCACCACTTGACTTCCTGCCCTATTCAGAGTCTTATGTTTGCCAGGACTCAAGCACCTCCTTATGGGGCAGACTCCACAGGGCAtgatatggtttggatctatgttccccacccaaatctcatgtccatttgtaatttccagtattggaggttgggcctggtgggaggtgattgaatcatggaggcagattttcccctctgtgctgctctcattatagtgagtgagtgctcaccagatctgattgtttcaaagtgtatagcacctctcccattgctctattcctgctgttcctgccatgtgaagacgtacctgcttccccttcaccttctgccatgattgtaagtttcctgaggcctccccagccatgcttcctgtacagcctgtcaaactgtcagccaattaatcctcttttctttataaattacccagtctcagatatttctttatagcagtgtgagaatggaccaatacaGGGCATCATGGTCAGTCCTGGGGAACAGCTTCCTGGAGTGGGAGGAGCTCAGTCCTGGTAACCTGCTGTTCCCTTGCCTGAAACCCCTTGTTTCCTCCACCTTCCATCTCATTCAACAAAGCTCTTGGGAGAACAA-CTTTAAGGACTCCCTATGCCTCTTCCTTCAAAGGTAGCCAGCCAAGAAGTAGATGGCTGGTTGAGCCATACTGACTACCATGGACAGCAGCAACAGAAGGTCAAAGGCAAAGGTCAGGTATTCTTTTCCTGGCAGGTACACAAGGACAACTAAGGGCAGGCCCCAAACGAGGAAGCTGATGGCCACAAAGCGGACAATGTGGTAGATCCGGATGGGTGAACAGTTCTTCAGGCAGTACAGGCTCCTGATGATCAAAGTCAGGCTGGAAATGCCCACCACAAGACAAATAAGCATGTGAAATATTATAAAGCCTGCCTGAAATTGGTCACATGCCAGGCCCTTCTCCCATTACTCACAAACCTGGCTAACCACATGCAAAGAAAGGGCCAGGGCCCAGCTCAGGATGCTCATCACAGCAGAGGTGTGCTTTGGGCGGTGGCAGCACCAGGTGGGACAGAGGACACACAGAAAGCTCTCAATATTCATGGCCACCAGGAGACAGAGACTCACTGTGTCAGAGAAATAGGACACAGGCTCCAGAAACATGGCCACCTGCAATGTCACCTGGTGATACAGCATGAGGATTTTCTCCAACAGGATCACAGTTACACAGGAGAGGTTGACCATATCAGCAGCGGCCAGGTTAAGGACATAGGTCATGTAGGGGCTGCTCCTGACCTGGAAGCAGAAAAGCCAGCACACCACACCATTGCCCACCAGCCCACAGAAGGCCACCAGCACTGTCAGGATGAAAACCACCTGTTTGCCCACCAACCACTCGCCTCCCGTATGACTCATGTTCACTTGTCCTGGGGTCTCTGTCCTGTTGTCCCAATCCAGCTTCCCAGAGAACACTGAGAGAAACTGGGCCATGGTGGGCTGCCTTGGCTGCCTGGGCACACCCTGCAAAGACAAAGGTTGGTAACTTACCAGGCCTAGGAAGGAGAGTCAGGGTTGCCTTCTGACCTG-CTGGGCTTCCCAAGAGGGTCCTGCTGGGCCTCCCAAGA-TTGGTGGGAATCTCACAGAGCAAAGTCAAGGAGAGGAATGAGTCTCCTGCAAGTGATCCATCCATCCCATATCCTCCACTGCAGGGTAC-CCTCTCCTGCTTGCCCCCATCCCTCTCTCCACCTCGTTCAGGTATTCTTGATGCTGTGCCCAACACC-AGGTGTGTATCCATGCACCTAGGTGCCCATAAAGGAAAGAGGTGCATTTCTTTACCTTTGTTCTCCAACTCTCTCATTGACACAGACAGTTTTCATGGCATGGTTTTGGTGGAGGCACCAGGCAATTCCTCTGCCCTAAGGTTCTGAGATATTCTGAGTCCCACATGGGGCAGTTGCTTTTCAGTGCTCTAGGGAAGGTCTACCCAACCTCTCTCCTGCTCACCTCCCCTCAACTCCTCACTTTCAGCACGAGGGCCTCCTGGTAGGACCTTTATGTTGTTCTGCTGCCTGGAAGGGCCTCTGCACATCTGTAAGCTTTGTATCCTCTTTCCAATCTTTGCCCCAGTATCAACTTCCAGAGAAGCTTCTGCT-----TCCTATTAACATTGCATTCATCACATGCTGAGTGTCTATGCA--------ACTTACTTACTTCTGCAGAAATCCCTCTGTGGGAATGGAAGATTTATCAGGTTTTTTATTCTCTTCACAATGTTGTTCAATAAC-TTCTCCAGCTCCTGGAACAGGGTTTGACATAGAGGACTCACTTGGGTACGGCACCTATGGAGAGCTTTATGCAGCTCAGTTACACTTGGGGAAGTGCTGGTGACCTCTTCATAAAAGCAAACTTTGCTTCTGAATCACAGAAGCTTCTGGAACAAAGCTTGTTCCGCAAACTGAT--TT-----AAAAAA-------AAAGGCTTCTTGGACTCCTGAGGGAGACTCACACCTGAACCCTGGGCTACGTCCACAA
s panTro5.chr6             29765404 2844 + 175400573 agtgtggtattgtccatggatggataaatagactgatggaatggagcagagggcccacagacagacccacaagagtccaactgtgattgatcaccaaggagGAGCGTGATGGTGAAGGACTGTGCTTGTTATAATGTGCTGGGGCCTTT-GATAACCACTGACTAAGTGGGCCAAGTGGCCTTTTGGCTTAGGCTGAAGCAggataataataacgttatctattcatagaattgtt---aaaattacctggttttatatttgcaaagtaattagagcagtattgagataaagggaatcttcagtgaacattTCCTCTAGTCATAGTTTTTTCCACCACTTGACTTCCTGCCCTATTCAGAGTCTTATGTTTGCCAGGACTCAAGCACCTCCTTATGGGGCAGACTCCACAGGGCAtgatatggtttggatctatgttccccacccaaatctcatgtccatttgtaatttccagtgttggaggtcgggcctggtgggaggtgattgaatcatggaggcagattttcccctctgtgctgctctcatgatagtgagtgagtgctcaccagatctgattgtttcaaagtgtatagcacctctcccattgctctattcctgctgctcctgccatgtgaagatgtacctgcttccccttcaccttctgccatgattgtaagtttcctgaggcctccccagtcatgcttcctgtacagcctgtcaaactgtcagccaattaatcctcttttctttataaattacccagtctcagatatttctttatagcagtgtgagaatgcaccaatacaGGGCATCATGGTCAGTCCTGGGGAACAGCTTCCTGGAGTGGGAGGAGCTCAGTCCTGGTAACCTGCTGTTCCCTTGCCTGAAACCCCTTGTTTCCTCCACCTTCCATCTCATTCAACAAAGCTCTTGGGAGAACAA-CTTTAAGGACTCCCTATGCCTCTTCCTTCAAAGGTAGCCAGCCAAGAAGTAGATGGCTGGTTGAGCCATACTGACTACCATGGACAGCAGCAACAGAAGGTCAAAGGCAAAGGTCAGGTATTCTTTTCCTGGCAGGTACACAAGGACAACTAAGGGCAGGCCCCAAACGAGGAAGCTGATGGCCACAAAGCGGACAATGTGGTAGATCCGGATGGGTGAATTGTTCTTCAGGCAGTACAGGCTCCTGATGGTCAAAGTCAGGCTGGAAATGCCCATCACAAGACAAATAAGCATGTGAAATATTATAAAGCCCGCCTGAAATTGGTCACATGCCAGGCCCTTCTCCCATTACTCACAAACCTGGCTAACCACATGCAAAGAAAGGGCCAGGGCCCAGCTCAGGATGCTCATCACAGCAGAGGTGTGCTTTGGGCAGTGGCAGCACCAGGTGGGACAGAGGACACACAGAAAGCTCTCAATATTCATGGCCACCAGGAGACAGAGACTCACTGTGTCAGAGAAATAGGACACAGGCTCCAGAAACATGGCCACCTGCAATGTCACCTGGTGATACAGCATGAGGATTTTCTCCAACAGGATCACAGTTACACAGAAGAGGTTGACCATATCAGCAGCGGCCAGGTTAAGGACATAGGTCATGTAGGGGCTGCTCCTGACCTGGAAGCAGAAGAGCCAGCAGACCACACCATTGCCCACCAGCCCACAGAAGGCCACCAGCACTGTCAGGATGAAAACCACCTGTTTGCCCACCAACCACTCGCCTCCCATATGACTCATGTTCACTTGTCCTGGGGTCTCTGTCCTGTTGTCCCAATCCAGCTTCCCAGAGAACACTGAGAGAAGCTGGGCCATGGTGGGCTGCCTTGGCTGCCTGGGCACACCCTGCAAAGACAAAGGTTGGTAACTTACCAGGCCTAGGAAGGAGAGTCAGGGTTGCCTTCCGACCTG-CTGGGCTTCCCAAGAGGGTCCTGCTGGGCCTCCCAAGA-TTGGTGGGAATCTCACAGAGCAAAGTCAAGGAGAGGAATGAGTCTCCTGCAAGTGATCCATCCATCCCATATCCTCCACTGCAGGGTAC-CCTCTCCTGCTTGCCCCCATCCCTCTCTCCACCTCGTTCAGGTATTCTTGATGCTGTGCCCAACACC-AGGTGTGTATCCATGCACCTAGGTGCCCATAAAGGAAAGAGGTGCATTTCTTTACCTTTGTTCTCCAACTCTCTCATTGACACAGACAGTTTTCATGGCATGGTTTTGGTGGAGGCACCAGGCAATTCCTCTGCCCTAAGGTTCTGAGATATTCTGAGTCCCACATGGGGCAGTTGCTTTTCAGTGCTCTAGGGAAGGTctacccaacctctctcctgctcacctcccctcaactcctcactttcagcacgagggcctcctggtaggacctttatgttgttctgctgcctggaagggcctctgcacatctgtaagctttgtatcctctttccagtctttgccccaggatcaacttccagagaagcttctgctgatcatcctattaacattgcaTTCATCACATGCTGAGTGTCTATGCA--------ACTTACTTACTTCTGGAGGAATCCCTCTGTGGGAATGGAAGATTTATCGGGTTTTTTATTCTCTTCACAATGTTGTTCAATAAC-TTCTCCAGCTCCTGGAACAGGGTTTGACATAGAGGACTCACTTGGGTACGGCACCTATGGAGAGCTTTATGCAGCTCAGTTACACTTGGGTAAGTGCTGGTGACCTCTTCATAGAAGCAAACTTTGCTTCTGAATCACAGAAGCTTCTGGAACAAAGCTTGTTCCGCAAACTGAT--TT----AAAAAAA-------AAAGGCTTCTTGGGGTCCCGAGGGAGACTCACACCTGAACCCTGGGCTACGTACACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30000026 2838 + 173848474 agtgtggtattgtccatggatggataaatagactgatggaatggagcagagggcccacagacagacccacaagagtccaactgTGATTGATCACCAAGGAGGAGCGTGATGGTGAAGGACTGTGCTTGTTATAATGTGCTGGGGCCTTT-GATAACCACTGACTAAGTGGGCCAAGTGGCCTTTTGGCTTAGGCTGAAGCAGGATAATAATAACGTTATCTATTCATAGAATTGTT---AAAATTACCTGGTTTTATATTTGCAAAGTAATTAGAGCAGTATTGAGATAAAGGGAATCTTCAGTGAACATTTCCTCTAGTCATAGTTTTTTCCACCACTTGACTTCCTGCCCTATTCAGAGTCTTATGTTTGCCAGGACTCAAGCACCTCCTTATGGGGCAGACTCCACAGGGCAtgatatggtttggatctatgttccccacccaaatctcatgtccatttgtaatttccagtgttggaggtcgggcctggtgggaggtgattgaatcatggaggcagattttcccctctgtgctgctctcatgatagtgagtgagtgctcaccagatctgattgtttcaaagtgtatagcacctctcccattgctctattcctgctgctcctgccatgtgaagatgtacctgcttccccttcaccttctgccatgattgtaagtttcctgaggcctccccagtcatgcttcctgtacagcctgtcaaactgtcagccaattaatcctcttttctttataaattacccagtctcagatatttctttatagcagtgtgagaatgcaccaatacaGGGCATCATGGTCAGTCCTGGGGAACAGCTTCCTGGAGTGGGAGGAGCTCAGTCCTGGTAACCTGCTGTTCCCTTGCCTGAAACCCCTTGTTTCCTCCACCTTCCATCTCATTCAACAAAGCTCTTGGGAGAACAA-CTTTAAGGACTCCCTATGCCTCTTCCTTCAAAGGTAGCCAGCCAAGAAGTAGATGGCTGGTTGAGCCATACTGACTACCATGGACAGCAGCAACAGAAGGTCAAAGGCAAAGGTCAGGTATTCTTTTCCTGGCAGGTACACAAGGACAACTAAGGGCAGGCCCCAAACGAGGAAGCTGATGGCCACAAAGCGGACAATGTGGTAGATCCGGATGGGTGAACTGTTCTTCAGGCAGTACAGGCTCCTGATGGTCAAAGTCAGGCTGGAAATGCCCACCACAAGACAAATAAGCATGTGAAATATTATAAAGCCTGCCTGAAATTGGTCACATGCCAGGCCCTTCTCCCATTACTCACAAACCTGGCTAACCACATGCAAAGAAAGGGCCAGGGCCCAGCTCAGGATGCTCATCACAGCAGAGGTGTGCTTTGGGCAGTGGCAGCACCAGGTGGGACAGAGGACACACAGAAAGCTCTCAATATTCATGGCCACCAGGAGACAGAGACTCACTGTGTCAGAGAAATAGGACACAGGCTCCAGAAACATGGCCACCTGCAATGTCACCTGGTGATACAGCATGAGGATTTTCTCCAACAGGATCACAGTTACACAGGAGAGGTTGACCATATCAGCAGCGGCCAGGTTAAGGACGTAGGTCATGTAGGGGCTGCTCCTGACCTGGAAGCAGAAGAGCCAGCAGACCACACCATTGCCCACCAGCCCACAGAAGGCCACCAGCACTGTCAGGATGAAAACCACCTGTTTGCCCACCAACCACTCGCCTCCCATATGACTCATGTTCACTTGTCC-----TCTCTGTCCTGTTGTCCCAATCCAGCTTCCCAGAGAACACTGAGAGAAGCTGGGCCATGGTGGGCTGCCTTGGCTGCCTGGGCACACCCTGCAAAGACAAAGGTTGGTAACTTACCAGGCCTAGGAAGGAGAGTCAGGGTTGCCTTCCGACCTG-CTGGGCTTCCCAAGAGGGTCCTGCTGGGCCTCCCAAGA-TTGGTGGGAATCTCACAGAGCAAAGTCAAGGAGAGGAATGAGTCTCCTGCAAGTGATCCATCCATCCCATATCCTCCACTGCAGGGTAC-CCTCTCCTGCTTGCCCCCATCCCTCTCTCCACCTCGTTCAGGTATTCTTGATGCTGTGCCCAACACC-AGGTGTGTATCCATGCACCTAGGTGCCCATAAAGGAAAGAGGTGCATTTCTTTACCTTTGTTCTCCAACTCTCTCATTGACACAGACAGTTTTCATGGCATGGTTTTGGTGGAGGCACCAGGCAATTCCTCTGCCCTAAGGTTCTGAGATATTCTGAGTCCCACATGGGACAGTTGCTTTTCAGTGCTCTAGGGAAGGTCTACccaacctctctcctgctcacctcccctcaactcctcactttcagcacgagggcctcctggtaggacctttatgttgttctgctgcctggaagggcctctgcacatctgtaagctttgtatcctctttccagtctttgccccaggatcaacttccagagaagcttctgctgatcatcctattaacattgcaTTCATCACATGCTGAGTGTCTATGCA--------ACTTACTTACTTCTGCAGGAATCCCTCTGTGGGAATGGGAGATTTATCGGGTTTTTTATTCTCTTCACAATGTTGTTCAATAAC-TTCTCCAGCTCCTGGAACAGGGTTTGACATAGAGGACTCACTTGGGTACGGCACCTATGGAGAGCTTTATGCAGCTCAGTTACACTTGGGTAAGTGCTGGTGACCTCTTCATAGAAGCAAACTTTGCTTCTGAATCACAGAAGCTTCTGGAACAAAGCTTGTTCCGCAAACTGAT--TT-----AAAAAA-------AAAGGCTTCTTGGGGTCCCGAGGGAGACTCACACCTGAACCCTGGGCTACGTACACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5803464 2844 +   6154872 agtgtggtattgtccatggatggataaatagactgatggaatagagcagagggcccacagacagaccgacaagagtccaactgtgattgatcaccaaggaggagcgtgatggtgaaggactgtgcttgttataatgtgctggggcctttggataaccaCTGACTAAGTGGGCCAAGTGGCCTTTTGGCTTAGGCTGAAGCAggataataataacgttatctattcatagaattgtt---aaaattacctggttttatatttgcaaagtaattagagcagtattgagataaagggaatcttcagtgaacattTCCTGTAGTCATAGTTGTTTCCACCACTTGACTTCCTGCCCTATTCAGAGTCTTATGTTTGCCAGGACTCAAGCACCTCCTTATGGGGCAGACTCCACAGGGCAtgatatggtttggatctatgttccccacccaaatatcatgtccatttgtaatttccagtattggaggtcgggcctggtgggaggtgattgaatcatggaggcagattttcccctctgtgctgctctgatgatagtgagtgagtgctcaccagatctgattgtttcaaagtgtatagcacctctcccattgctctatttctgctgctcctgccatgtgaagatgtacctgcttccccttcaccttctgccatgattgtaagtttcctgaggcctccccagtcatgcttcttgtacagcctgtcaaactgtcagccaattaatcctcttttctttataaattacccagtctcagatatttctttatagaagtgtgagaatgcaccaatacaGGGCATCATGGTCAGTCCTGGGGAACAGCTTCCTGGAGTGGGAGGAGCTCAGTCCTGGTAACCTGCTGTTCCCTTGCCTGAAACCCCTTGTTTCCTCCACCTTCCATCTCATTCAACAAAGCTCTTGGGAGAACAA-CTTTAAGGACTCCCTATGCCTCTTCCTTCAAAGGTAGCCAGCCAAGAAGTAGATGGCTGGTTGAGCCATACTAACTACCATGGACAGCAGCAACAGAAGGTCAAAGGCAAAGGTCAGGTATTCTTTTCCTGGCAGGTACACAAGGACAACTAAGGGCAGGCCCCAAACGAGGAAGCTGATGGCCACAAAGCAGACAATGTGGTAGATCCGGATGGGTGAACTGTTCTTCAGGCAGTACAGGCTCCTGATGGTCAAAGTCAGGCTGGAAATGCCCACCACAAGACAAATAAGCATGTGAAATATTATAAAGCCTGCCTGAAATTGGTCACATGCCAGGCCCTTCTCCCATTACTCACAAACCTGGCTAACCACATGCAAAGAAAGGGCCAGGGCCCAGCTCAGGATGCTCATCACAGCAGAGGTGTGCTTTGGGCAGTGGCAGCACCAGGTGGGACAGAGGACACACAGAAAGCTCTCAATATTCATGGCCACCAGGAGACAGAGACTCACTGTATCAGAGAAATAGGACACAGGCTCCAGAAACACGGCCACCTGCAATGTCGCCTGGTGATACAGCAAGAGGATTTTCTCCAACAGGATCACAGTTACACAGGAGAAGTTGACCATATCAGCAGCGGCCAGGTTAAGGACATAGGTCATGT-GGGGCTGCTCCTGACCTGGAAGCAGAAGAGCCAGCAGACCACACCATTGCCCACCAGCCCACAGAAGGCCACCAGCACTGTCAGGATGAAAACCACCTGTTTGCCCACCAACCACTCGCCTCCCATATGACTCATGTTCACTTGTCCTGGGGTCTCTGTCCTGTTGTCCCAGTCCAGCTTCCCAGAGAACACTGAGAGAAGCTGGGCCATGGTGGGCTGCCTTGGCTGCCTGGGCACACCCTGCAAAGACAAAGGTTGGTAACTTACCAGGCCTAGGAAGGAGAGTCAGGGTTGCCTTCTGACCTG-CTGGGCTTCCCAAGAGGGTCCTGCTGGGCCTCCCAAGA-TTGGTGGGAATCTCACAGACCAAAGTCAAGGAGAGGAATGAGTCTCCTGCAAGTGATCCATCCATCCCATATCCTCCACTGCAGGGTAC-CCTCTCCTGCTTGCCCCCATCCCTCTCTCCACCTCGTTCAGGTATTCTTGATGCTGTGCCCAACACC-AGGTGTGTATCCATGCACCTAGGTGCCCATAAAGGAAAGAGGTGCATTTCTTTACCTTTGTTCTCCAACTCTCTCATTGATACAGACAGTTTTCATGGCATGGTTTTGGTGGAGGCACCAGGCAATTCCTCTGCCCTAAGGCTCTGAGATATTCTGAGTCCCACATGGGGCAGTTGCTTTTCAGTGCTCTAGGGAAGGTctacccaacctctctcctgctcacctcccctcaactcctcactttcagcatgagggcctcctggtaggacctttatgttgttctgctgcctgaaagggcctctgcacatctgtaagctttgtatcctctttccaatctttgccccaggatcaacttccagagaaacttctgctgatcatcctattaacattgcaTTCATCACATGCTGAGTGTCTATGCA--------ACTTACTTACCTCTGCAGGAATCCCTCTGTGGGAATGGAAGATTTATCGGGTTTTTTATTCTCTTCACAATGTTGTTCAATAAC-TTCTCCAGCTCCTGGAACAGGGTTTGACATAGAGGACTCACTTGGGTACGGCAACTATGGAGAGCTTTATGCAGCTCAGTTACACTTGGGGAAGTGCTGGTGACCTCTTCATAGAAGCAAACTTTGCTTCTGAATCACAGAAGCTTCTGGAACAAAGCTTGTTCCACAAACTGAT--TT----TAAAAAA-------AAAGGCTTCTTGGGGTCCCGAGGGAGACTCACACCTGAACCCTGGGCTACGTCCACAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74503012 2808 + 122973662 agtgtggtattgtccatggatggataaatagactgatggaatagagcagagggcccagagacagacccataagagtccaactgtgatcgatcaccaaggaggagcgtgatggtgaaggactgtgcttgttataatgtgctggggcctttggataaccaCTGGCTAAGTGAGCCAAATGGTCTTTTGGCTTAGGCTGAACCgggataataataatgctatctattcatagcattgtt---aaaattacctgattttatatttgcaaagtaattagagcagtATTGAGGTAAAGGGAATCTTCAGTGAACATTTCCTCTAGTCATAGTTGTTTCCACCACTTGACTTCCTGCCCTATTCAGAGTCTTATATTTGCCAGGACTCAAGTACCTCCTTATGGGGCAGACTCAACAAGCTATGATTTG----------------------------------TAATttgtaatttccagtattggaggtcgggcctggtgggaggtgattgaatcatggaggcagattttcccctcagtgctgctctcatgatagcaagtgactgctcaccagatctgattgtttcaaagtgtatagcacctctcccattgctctcttcctgttgctcctgccatgtgaagatgtgcctgcttccccttcaccttctgccatgattgtaagtttcctgaggcctccccagccatgcttcctgtacagcctgtcgaactgtgagccaattaatcctcttttctttataaattacccagtctcagatatttctttatagcagtgtgagaatggaccaatacaGGGCATCACGGTCAGTCCTGGAGAACAGCTTCCTGGAGTGGGAGGAGCTCAGTCCTGGTAACCTGCTGTTCCCTTGCCTGAGACCCCTTGTTTCCTCCACCTTCCATATCATTCAACAAAGCCCTTGGGAGAACAACCTTTAAGGACTCCCTGTGCCTCTTCCTTCGAAGGTAGCCAGCCAAGAAGTAGATGGCTGGTTGAGCCATACTGACTACCATGGACAGCAGCAACAGGAGGTCAAAGGCAAAGGTCAGGTATTCTTCTCCTGGCAGGTACACAAGGACAACTAACGGCAAGCCCCAAACGAGGAAGCTGATGGCCACAAAGCGGACAATGTGGTAGATCCGGATGGGTGAACAGTTCTTCAGGCAGTACAGGCTCCTGATGGTCAAAGTCAGGCTGGAAATGCGCATCACAAGACAAATAAGCATGTGAAATATTATAAAGCCTGCCTGAAATTGGTCACATGCCAGGCCCTTCTCCCAGTACTCACAAACCTGGCTAACCACATGCAAAGAAAGGGCCGGGGCCCAGCTCAGGACTCTCATCACAGCAGAGGTGTGCTTTGGGCGGTGGCAGCACCAGGTGGGACAGAGGACACACAGAAAGCTCTCAATATTCATGGCCACCAGGAGACAGAGACCCACTGTGTCAGAGAAATAGGACACAGGCTCCAGAAACACGGCCATCTGCAATGTCACCTGGTGATACAGCACGAGGATTTTCTCCAACAGGATCACAGTTACACAGGAGAGGTGGACCATATCAGCAGCGGCCAGGTTAAAGACGTAGGTCATGTAGGGGCTGCTCCTGACCTGGAAGCAGAAGAGCCAGCAGACCACACCATTG-CCACCAGCCCACAGAAGGCCACCAGCACTGTCAGGATGAAAACCACCGGTTTGCCCACCAACCACTCGCCCCCCGTATGACTCATGTTCACGTGTCCTAGGGCCTCTGTCCTGTTGTCCCAATCCAGCTTCCCAGAGAGCATTGAGAGAAGCTGGGCCATGGTGGGCTGCCTTGGCTGTCTGGGCACACCCTGCAAAGACAAATGTTGGTAACTTACCAGGCCTAGGAAGGAGAGTCAGGGTTGCCTTCTGACCTG-CTGGGCTTCCCAAGAAGGTCGTGCTGGGCCTCCCAAGA-TTGGTGGGAATCTCACAGAGCAAAGTCAAGGAGAGGAATGAGTCTCCTGCAGGAGATCCATCCATCCCATATCCTCCACTGCAGGGTAC-CCTCTCCTGCTTGCCCCCATCCCTCTCTCCACCTCGTTCAGGTATTCTTGATGCTGTGCCCAACACC-AGGTGTGTATCCATGCACCTAGGTGCCCATAAGGGAAAGAGGTGCATTTCTTTACCTTTGTTCTCCAACTCTCTCACTGACACAGACAGTTTTCATGGCGTGGTTTTGGTGGAGGCACCAGGCAATTCCTCTACCCTAAGGTTCTGAGATATTCTGAGTCCCACATGGGGCAGTTGCTTTTCAGTGCTCTAGGGAA-GTCTACCCAACCTCTCTCCTGCTCACCTCCCCTCAACTCCTCACTTTCAGCACAAGGGCCTCCTGGTaggacctttatgctgttctgctgcctggaagggcctctgcacatctgtaagctttgtatcctctttccaatctttgccccaggatcaacttccagagaagcttctgctgatcatcctgttaacattgcaTTCATCACATGCTGAGTGTCTATGCA--------ACTTTCTTACTTCTGCAGGAATCCCTCTGTGGGAATGGAAGATTTATCGGGTTTTTTATTCTCCTCACAATGTTGTTCACTAACTTTCTCCGGCTCCTGGAACAGAGTTTGACATAGAGGAGTCACTTGGGTAGGGCACCTATGGAGAGCTTTATGCAGCTCAG-TACACTTGGGGAAGTGCTGGTGACCTCTTCATGGAAGCAAACTTTGCTTCTGAATCATAGAAGCTTCTGGAACAAAGCTTGTTCCACAAACTGAT--TT------TAAAA-------AAAGGCTTCTTGGGGTCCCGAGAGAGACTCACACCTGAACTCTGGGCTACGTCCACAA
i nomLeu3.chr1a            C 0 I 143
s rheMac8.chr4             29976756 2840 + 172585720 agtgtggtattgtccatgggtggataaatagactgatggaatagagcagagggcccagagacagacccacaagagtccaaccgtgattGATCTCCAAGGAGAAGAGTGATGGTGAAGGGCTATGCTTGTTATAATGTACTGAGGCCTTTGGATAGCTATTGGCTAAATGGGCCAAGTGGCCTTTTGGCTTAGGCTGAAGCAggataatagtaatgttatctattcatagaattgtt---aaaattacctgatttcatatttgcaaagtaattagagcagtATTGAGGTAAAGGGAAACTTCAGTGAACATTTCCTCTAGTCATAGTTGTTTCCACCACTTGACTTCCTGCCCTATTCAGAGTC--ATGTTTGCCAGGATTCAAGCACCTCCTTATGGGGCAGACTCCACAGGGCAtgatatggtttgaatctgtgttccgcacccaaatctcacgtccat---------------ttggaggttgggcctggtgggaggtgattgaatcatggaggcagatttccccctcagtgctgctgtcatgatagcgcgtgagtgctcaccagatctgattgtttcaaaatgtatagcacctctcccattgctctcttcctcctgctcctgccatgtgaagacatgcctgcttccctttcaccttctgccatgattgtaagtttcctgaggccttcccagccgtgcttcctgtacagcctgtcaacctgtgagccaatcaatcctcttttctttataaattacccagtctcagatatttctttatagcagtgtgagaacggaccaatacaGACCATCATGGTCAGTTCTGGGGAACAGTTTCCTGGAGTGGGAGGAGCTCCATCCTGGTAACCTGCTGTTCCCTTGCCTGAGACCCCTTGTCTCCTCCACCTTCCATCTCATTCAACAAAGCCCTTAGGAGAACAACCTTTAAGGACTCCCTATGCCTCTTCCTTTGAAGGTAGCCAGCCAAGAAGTAGATGGCTGATTGAGCCATACTGACTACCATGGACAGCAGCAACAGGAGGTCAAAGGCAAAGGTCAGGTATTCTTCTCCTGGCAGGTACACAGGGACAACTAAAGGCAGGCCCCAGATGAGGAAGCTGATGGCCACAAAGCGGGCAATGTGGTAGATCCGGATAGGTGAACACTTCTTCAGGCAGCACAGGCTCCTGATGGTCAAAGTCAGGCTGGAAATGCCCATCACAAGACAAATAAGCATGTGAAATATTATAAAGCCTGCGTGAAATTGGTCACATGCCAAGCCCTTCTCCCAGTACTCACAGACCTGGCTAACCACATGCAAAGAAAGGCCCAGGGCCCAGCTCAGGGCGCTCATCATGGCAGAGGTGCGTTTTGGGCGGTGGCAACACCAGGTGGGACAGAGGACACACAGAAGGCTCTCAATACTCATGGCCACCAGGAGACAGAGACCCACTGTGTCGGAGAAATAGGAGACAGGCTCCAGAAACACGGCCACCTGCAATGTCACCTGGTAATACAGCACGAGGATTTTCTCCAACAGGATCACAGTTACACAGGAGAGGTTGACCATATCAGCAGCGGCCAGGTTAAGGATGTATGCCATGTAGGGGTTGCTCCTGACCTGGGAGCAGAGGAGCCAGCAGACCACACCATTGCCCACCAGCCCACATAAAGCCACCAGCACTGTCAGGATGAAAACCACCTGTTTGCCCACCAACCACTCGCCTCCCGTATGACTCATGTTCATGTGTCCTGGGGTCTCTGTCCCGTTGTCCCAATCCGGCTTCCCAGAGAACATTGAGAGAAGCTGGGCCGTGGTGGGCTGCGTTTGCTGCCTGGGCACACTCTGCAAAGACAAAGGTTGGTAACTTACCAGGTCTAGGAAGGAGAGTCAGGGTTGCCTTCTGACCTG-CTGGGCTTCCCAAGAGGGTCCTGCTGGGCCTCCCATGA-TTGGTGGGAATCTCACAGAGCAAAGTCAAGGAGAGGAATGAGTCTCCTGCGGGAGATCCATCCATCCCATATCCTCCACGGCAGGGTAC-CCTCTCCTGCTTGCCCCCATCCCTCTCTCCACCTCATTCAGGTATTCTTGATGCTGTGCCCAACACC-AGGTGTGTATCCATGCGCCCAGGTGCCCATAAGGGAAAAAGGTGCATTTCTTTACCTTTGTTCTCCAACTCTCTCACTGACACAGACAGTTTTCATGGCATGGTTTTGGTAGAGGCACCAGGCAATTCCTCTACCCTAAGACTCTGAGAGATTCTGAGTCCCGGATGGGGCAGTTGCTTTTCAGTGCTCTGGGGAAGGTCTACCCAATCTCTCTCCTGCTCACCTCCCCTCAATTCCTCACTTTCAGCACAAGGGCCTCCTGGTaggatctttattctgctctgctgcctagaagggcctctgcacatccgtaagctttgtctcctctttccaatctttgccccaggatcaacttccagagaagcttctgctgatcatcctattaacattgcaTTCATCACATGCTGTGTGTctatgcaaattacttacttacttacttttgcaggaatccttctgtggaaatggaagatttattggg-tttttattctcttcacaatgttgttcaataac-ttctccagctcctggaacagggtttgacacagaggagtcactTGGGTAGGGTGCCTATGGAGAGCTTTATGTAGGTCAGTTACACTTGGGGAAGTGCTGGTGACCTCTTCATGGAAGCAAACTTTGCTTCTGAATCATAGAAGCTTCTGGAACAAAGTTTGTTCCACAAACTGATAAAA--AAAAAAAAA-------AAAGATTTCTTGGGGTCCCGAGGGAGACACGCACCTGAGCCCTGGGCTACATCCACTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29640694 2838 - 170955103 agtgtggtattgtccatgggtggataaatagactgatggaatagagcagagggcccagagacagacccacaagagtccaaccgtgattGATCTCCAAGGAGAAGAGTGATGGTGAAGGGCTATACTTGTTATAATGTACTGAGGCCTTTGGATAGCTATTGGCTAAATGGGCCAAGTGGCCTTTTGGCTTAGGCTGAAGCAGGATAATAGTAATGTTATCTATTCATAGAATTGTT---AAAATTACCTGATTTCATATTTGCAAAGTAATTAGAGCAGTATTGAGGTAAAGGGAAACTTCAGTGAACATTTCCTCTAGTCATAGTTGTTTCCACCACTTGACTTCCTGCCCTATTCAGAGTC--ATGTTTGCCAGGATTCAAGCACCTCCTTATGGGGCAGACTCCACAGGGCAtgatatggtttgaatctgtgttccgcacccaaatctcacgtccat---------------ttggaggttgggcctggtgggaggtgattgaatcatggaggcagatttccccctcagtgctgctgtcatgatagcgagtgagtgctcaccagatctgattgtttcaaaatgtatagcacctctcccattgctctcttcctcctgctcctgccgtgtgaagacatgcctgcttccctttcaccttctgccatgattgtaagtttcctgaagccttcccagccgtgcttcctgtacagcctgtcaaactgtgagccaatcaatcctcttttctttataaattacccagtctcagatatttctttatagcagtgtgagaacggaccaatacaGACCATCATGGTCAGTTCTGGGGAACAGTTTCCTGGAGTGGGAGGAGCTCCATCCTGGTAACCTGCTGTTCCCTTGCCTGAGACCCCTTGTCTCCTCCACCTTCCATCTCATTCAACAAAGCCCTTAGGAGAACAACCTTTAAGGACTCCCTATGCCTCTTCCTTTGAAGGTAGCCAGCCAAGAAGTAGATGGCTGATTGAGCCATACTGACTACCATGGACAGCAGCAACAGGAGGTCAAAGGCAAAGGTCAGGTATTCTTCTCCTGGCAGGTACACAGGGACAACTAAAGGCAGGCCCCAGATGAGGAAGCTGATGGCCACAAAGCGGGCAATGTGGTAGATCCGGATGGGTGAACACTTCTTCAGGCAGCACAGGCTCCTGATGGTCAAAGTCAGGCTGGAAATGCCCATCACAAGACAAATAAGCATGTGAAATATTATAAAGCCTGCGTGAAATTGGTCACATGCCAAGCCCTTCTCCCAGTACTCACAGACCTGGCTAACCACATGCAAAGAAAGGCCCAGGGCCCAGCTCAGGGCGCTCATCATGGCAGAGGTGCGTTTTGGGCGGTGGCAACACCAGGTGGGACAGAGGACACACAGAAGGCTCTCAATACTCATGGCCACCAGGAGACAGAGACCCACTGTGTCGGAGAAATAGGAGACAGGCTCCAGAAACACGGCCACCTGCAATGTCACCTGGTGATACAGCACGAGGATTTTCTCCAACAGGATCACAGTTACACAGGAGAGGTTGACCATATCAGCAGCGGCCAGGTTAAGGATGTATGCCATGTAGGGGTTGCTCCTGACCTGGGAGCAGAGGAGCCAGCAGACCACACCATTGCCCACCAGCCCACATAAAGCCACCAGCACTGTCAGGATGAAAACCACCTGTTTGCCCACCAACCACTCGCCTCCCGTATGACTCATGTTCATGTGTCCTGGGGTCTCTGTCCCGTTGTCCCAATCCGGCTTCCCAGAGAACATTGAGAGAAGCTGGGCCGTGGTGGGCTGCGTTTGCTGCCTGGGCACACTCTGCAAAGACAAAGGTTGGTAACTTACCAGGTCTAGGAAGGAGAGTCAGGGTTGCCTTCTGACCTG-CTGGGCTTCCCAAGAGGGTCCTGCTGGGCCTCCCATGA-TTGGTGGGAATCTCACAGAGCAAAGTCAAGGAGAGGAATGAGTCTCCTGCGGGAGATCCATCCATCCCATATCCTCCACGGCAGGGTAC-CCTCTCCTGCTTGCCCCCATCCCTCTCTCCACCTCATTCAGGTATTCTTGATGCTGTGCCCAACACC-AGGTGTGTATCCATGCGCCCAGGTGCCCATAAGGGAAAAAGGTGCATTTCTTTACCTTTGTTCTCCAACTCTCTCACTGACACAGACAGTTTTCATGGCATGGTTTTGGTAGAGGCACCAGGCAATTCCTCTACCCTAAGACTCTGAGAGATTCTGAGTCCCGGATGGGGCAGTTGCTTTTCAGTGCTCTGGGGAAGGTCTACCCAATCTCTCTCCTGCTCACCTCCCCTCAATTCCTCACTTTCAGCACAAGGGCCTCCTGGTaggatctttattctgctctgctgcctagaagggcctctgcacatccgtaagctttgtctcctctttccaatctttgccccaggatcaacttccagagaagcttctgctgatcatcctattaacattgcaTTCATCACATGCTGTGTGTCTATGCAAATTACTTACTTACTTACTTTTGCAGGAATCCTTCTGTGGAAATGGAAGATTTATTGGG-TTTTTATTCTCTTCACAATGTTGTTCAATAAC-TTCTCCAGCTCCTGGAACAGGGTTTGACACAGAGGAGTCACTTGGGTAGGGTGCCTATGGAGAGCTTTATGTAGGTCAGTTACACTTGGGGAAGTGCTGGTGACCTCTTCATGGAAGCAAACTTTGCTTCTGAATCATAGAAGCTTCTGGAACAAAGTTTGTTCCACAAACTGAT--AA--AAAAAAAAA-------AAAGATTTCTTGGGGTCCCGAGGGAGACACGCACCTGAGCCCTGGGCTACATCCACTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2684145 2837 -   2996164 agtgtggtattgtccatgggtggataaatagactgatggaatagagcagagggcccagagacagacccacaagagtccaaccgtgattGATCTCCAAGGAGAAGAGTGATGGTGAAGGGCTATGCTTGTTATAATGTACTGAGGCCTTTGGATAGCTATTGGCTAAATGGGCCAAGTGGCCTTTTGGCTTAGGCTGAAGCAGGATAATAGTAATGTTATCTATTCATAGAATTGTT---AAAATTACCTGATTTCATATTTGCAAAGTAATTAGAGCAGTATTGAGGTAAAGGGAAACTTCAGTGAACATTTCCTCTAGTCATAGTTGTTTCCACCACTTGACTTCCTGCCCTATTCAGAGTC--ATGTTTGCCAGGATTCAAGCACCTCCTTATGGGGCAGACTCCACAGGGCAtgatatggtttgaatctgtgttccgcacccaaatctcacgtccat---------------ttggaggttgggcctggtgggaggtgattgaatcatggaggcagatttccccctcagtgctgctgtcatgatagcgagtgagtgctcaccagatctgattgtttcaaaatgtatagcacctctcccattgctctcttcctcctgctcctgccatgtgaagacatgcctgcttccctttcaccttctgccatgattgtaagtttcctgaggccttcccagccgtgcttcctgtacagcctgtcaaactgtgagccaatcaatcctcttttctttataaattacccagtctcagatatttctttatagcagtgtgagaacggaccaatacaGACCATCATGGTCAGTTCTGGGGAACAGTTTCCTGGAGTGGGAGGAGCTCCATCCTGGTAACCTGCTGTTCCCTTGCCTGAGACCCCTTGTCTCCTCCACCTTCCATCTCATTCAACAAAGCCCTTAGGAGAACAACCTTTAAGGACTCCCTATGCCTCTTCCTTTGAAGGTAGCCAGCCAAGAAGTAGATGGCTGATTGAGCCATACTGACTACCATGGACAGCAGCAACAGGAGGTCAAAGGCAAAGGTCAGGTATTCTTCTCCTGGCAGGTACACAGGGACAACTAAAGGCAGGCCCCAGATGAGGAAGCTGATGGCCACAAAGCGGGCAATGTGGTAGATCCGGATGGGTGAACACTTCTTCAGGCAGCACAGGCTCCTGATGGTCAAAGTCAGGCTGGAAATGCCCATCACAAGACAAATAAGCATGTGAAATATTATAAAGCCTGCGTGAAATTGGTCACATGCCAAGCCCTTCTCCCAGTACTCACAGACCTGGCTAACCACATGCAAAGAAAGGCCCAGGGCCCAGCTCAGGGCGCTCATCATGGCAGAGGTGCGTTTTGGGCGGTGGCAACACCAGGTGGGACAGAGGACACACAGAAGGCTCTCAATACTCATGGCCACCAGGAGACAGAGACCCACTGTGTCGGAGAAATAGGAGACAGGCTCCAGAAACACGGCCACCTGCAATGTCACCTGGTGATACAGCACGAGGATTTTCTCCAACAGGATCACAGTTACACAGGAGAGGTTGACCATATCAGCAGCGGCCAGGTTAAGGATGTATGCCATGTAGGGGTTGCTCCTGACCTGGGAGCAGAGGAGCCAGCAGACCACACCATTGCCCACCAGCCCACATAAAGCCACCAGCACTGTCAGGATGAAAACCACCTGTTTGCCCACCAACCACTCGCCTCCCGTATGACTCATGTTCATGTGTCCTGGGGTCTCTGTCCCGTTGTCCCAATCCGGCTTCCCAGAGAACATTGAGAGAAGCTGGGCCGTGGTGGGCTGCGTTTGCTGCCTGGGCACACTCTGCAAAGACAAA-GTTGGTAACTTACCAGGTCTAGGAAGGAGAGTCAGGGTTGCCTTCTGACCTG-CTGAGCTTCCCAAGAGGGTCCTGCTGGGCCTCCCATGA-TTGGTGGGAATCTCACAGAGCAAAGTCAAGGAGAGGAATGAGTCTCCTGCGGGAGATCCATCCATCCCATATCCTCCACGGCAGGGTAC-CCTCTTCTGCTTGCCCCCATCCCTCTCTCCACCTCATTCAGGTATTCTTGATGCTGTGCCCAACACC-AGGTGTGTATCCATGCGCCCAGGTGCCCATAAGGGAAAAAGGTGCATTTCTTTACCTTTGTTCTCCAACTCTCTCACTGACACAGACAGTTTTCATGGCATGGTTTTGGTAGAGGCACCAGGCAATTCCTCTACCCTAAGACTCTGAGAGATTCTGAGTCCCGGATGGGGCAGTTGCTTTTCAGTGCTCTGGGGAAGGTCTACCCAATCTCTCTCCTGCTCACCTCCCCTCAATTCCTCACTTTCAGCACAAGGGCCTCCTGGTAGTATCTTTATTCTGCTCTGctgcctagaagggcctctgcacatccgtaagctttgtctcctctttccaatctttgccccaggatcaacttccagagaagcttctgctgatcatcctattaacattgcaTTCATCACATGCTGTGTGTCTATGCAAATTACTTACTTACTTACTTTTGCAGGAATCCTTCTGTGGAAATGGAAGATTTATTGGG-TTTTTATTCTCTTCACAATGTTGTTCAATAAC-TTCTCCAGCTCCTGGAACAGGGTTTGACACAGAGGAGTCACTTGGGTAGGGTGCCTATGGAGAGCTTTATGTAGGTCAGTTACACTTGGGGAAGTGCTGGTGACCTCTTCATGGAAGCAAACTTTGCTTCTGAATCATAGAAGCTTCTGGAACAAAGTTTGTTCCACAAACTGAT--AA--AAAAAAAAA-------AAAGATTTCTTGGGGTCCCGAGGGAGACACGCACCTGAGCCCTGGGCTACATCCACTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     436133 2837 +    766320 agtgtggtattgtccatggatggataaatagactgatggaatagagcagagggcccagagacagacccacaagagtccaaccgtgattGATCTCCAAGGAGGAGAGTGATGGTGAAGGGCTATATTTGTTATAATGTACTGAGGCCTTTGGATAGCTATTGGCTAAATGGGCCAAGTGGCCTTTTGGCTTAGGCTGAAGCAGGATAATAGTAATGTTATCTATTCATAAAATTGTT---AAAATTACCTGGTTTCATATTTGCAAAGTAATTAGAGCAGTATTGAGGTAAAAGGAAACTTCAGTGAACATTTCCCTTAGTCATAGTTGTTTCCACCACTTGACTTCCTGCCCTATTCAGAGTC--ATGTTTGCCAGAATTCAAGCACCTCCTTATGGAGCAGACTCCACAGGGCAtgatgtggtttgaatctgtgttccccacccaaatctcacatccat---------------ttggaggttgggcctggtgggaggtgattgaatcatggaggcagatttccccctcagtgctgctgtcatgatagcgagtgagtgctcaccagatctgattgtttcaaagtgtataacacctctcccattgctctcttcctcctgctcctgccatgtgaagacgtgcctgcttcccctgcaccttctgccatgattgtaagtttcctgaggccttcccagccgtgcttcctatacagcctgtcaaactgtgagccaatcaatcctgttttctttataaattacccagtctcagatatttctttatagcagtgtgagaacggaccaatacaGGGCATCATGATCAGTTCTGGGGAACAGTTTCCTGGAGTGGGAGGAGCTCCATCCTGGTAACCTGCTGTTCCCTTGCCTGAGACCCCTTGTCTCCTCCACCTTCCATCTCATTCAACAAAGCCCTTAGGAGAACAACCTTTAAGGACTCCCCATGCCTCTTCCTTTGAAGGTAGCCAGCCAAAAAGTAGATGGCTGATTGAGCCATACTGACTACCATGGACAGCAGCAACAGGAGGTCAAAGGCAAAGGTCAGGTATTCTTCTCCTGGCAGGTACACAGGGACAACTAAGGGCAGGCCCCAGATGAGGAAGCTGATGGCCACAAAGCGGACAATGTGGTAGATCCGGATGGGTGAACACTTCTTCAGGCAGCACAGGCTCCTGATGGTCAAAGTCAGGCTGGAAATGCCCATCACAAGACAAATAAGCATGTGAAATATTATAAAGCCTGCATGAAATTGGTCACATGCCAAGCCCTTCTCCCAGTACTCACAGACCTGGCTAACCACATGCAAAGAAAGGCCCAGGACCCAGCTCAGGGCACTCATCATGGCAGAGGTGTGTTTTGGGCGGTGGCAACACCAGGTGGGACAGAGGACACGCAGAAAGCTCTCAATACTCATGGCCACCAGGAGACAGAGACCCACTGTGTCGGAGAAATAGGAGACAGGCTCCAGAAACACGGCCACCTGCAATGTCACTTGGTGATACAGCACGAGGATTTTCTCCAACAGGATCACAGTTACACAGGAGAGGTTGACCATATCAGCAGCGGCCAGGTTAAGGATGTATGCCATGTAGGGGTTGCTCCTGACCTGGGAGCAGAGGAGCCAGCAGACCACACCATTGCCCACCAGCCCACATAAAGCCACCAGCACTGTCAGGATGAAAACCACCTGTTTGCCCACCAACCACTCGCCTCCCGTATGACTCATGTTCATGTGTCCTGGGGTCTCTGTCCCGTTGTCCCAATCCGGCTTCCCAGAGAACATTGAGAGAAGCTGGGCCGTAGTGGGCTGCCTTTGCTGCCTGGGCACACTCTGCAAAGACAAAGGTTGGTAACTTACCAGGTCTAGGAAGGAGAGTCAGGGTTGCCTTCTGACCTG-CTGGGCTTCCCAAGAGGGTCCTGCTGGGCCTCCCATGA-TTGGTGGGAATCTCACAGAGCAAAGTCAAGGAGAGGAATGAGTCTCCTGTGGGAGATCCATCCATCCCATATCCTCCATGGCAGGGTAC-CCTCTCCTGCTTGCCCCCATCCCTCTCTCCACCTCGTTCAGGTATTCTTGATGCTGTGCCCAACACC-AGGTGTGTATCCATGCGCCCAGGTGCCCATAAGGGAAAAAGGTGCATTTCTTTACCTTTGTTCTCCAACTCCCTCACTGACACAGACAGTTTTCATGGCATGGTTTTGGTGGAGGCACCAGGCAATTCCTCTACCCTAAGGCTCTGAGAGATTCTGAGTCCCAGATGGGGCAGTTGCTTTTCAGTGCTCTGGGGAAGGTctacccaatctctctcctgctcacctcctgtcaatttctcactttcagcacaagggcctcctggtaggacctttatgctgttctgctgcctagaagggcctctgcacatccgtaagctttgtctcctctttccaatctttgccccaggatcaacttccagagaagcttctgctgatcatcctattaacattgcaTTCATCACATGCTGTGTGTctatgcagattacttacttacttacttttgcaggaatccctctgtggaaatggaagatttattggg-tttttattctcttcacaatgttgttcactaac-ttctccagctcctggaacagggtttgacacagaggagtcactTGGGTAGGGTGCCTATGGAGAGCTTTATGTAGGTCAGTTACACTTGGGGAAGTGCTGGTGACCTCTTCATGGAAGCAAACTTTGCTTCTGAATCATAGAAGCTTCTGGAACAAAGTTTGTTCCACAAACTGAT---T--TAAAAAAAA-------AAAGATTTCTTGGGGTCCCGAGGGAGACACGCACCTGAGCCCTGGGCTACATCCACAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28894340 2837 -  71996105 agtgtggtattgtccatggatggataaatagactgatggaatagagcagaggacccagagacagacccacaagagtccaaccgtgattGATCTCCAAGGAGGAGAGTGATGGTGAAGGGCTATGCTTGTTATAATGTACTGAGGCCTTTGGATAGCTATTGGCTAAATGGGCCAAGTGGCCTTTTGGCTTAGGCTGAAGCAGGATAATAGTAATGTTATCTATTCATAGAATTGTT---AAAATTACCTGGTTTCATATTTGCGAAGTAATTAGAGCAGTATTGAGGTAAAGGGAAACTTCAGTGAACATTTCCTCTAGTCATAGTTGTTTCCACCACTTGACTTCCTGCCCTATTCAGAGTC--ATGTTTGCCAGGATTCAAGCACCTCCTTATGGGGCAGACTCCACAGGGCAtgatgtggtttgaatctgtgttccccacccaaatctcacgtccat---------------ttggaggttgggcctggtgggaggtgattgaatcatggaggcagatttctccctcagtgctgctgtcatgatagcgagtgagtgctcaccagatctgattgtttcgaagtgtatagcacctctcccattgctctcttcctcctgctcctgccatgtgaagacgtgcctgcttcccctgcaccttctgccatgattgtaagtttcctgaggccttcccagccgtgcttcctgtacagcctgtcaaactgtgagccaatcaatcctcttttctttataaattacccagtctcagatatttctttatagcagtgtgagaacggaccaatacaGGGCATCATGGTCAGTTCTGGGGAACAGTTTCCTGGAGTGGGAGGAGCTCCATCCTGGTAACCTGCTGTTCCCTTGCCTGAGACCCCTTGTCTCCTCCACCTTCCATCTCATTCAACAAAGCCCTTAGGAGAACAACCTTTAAGGACTCCCTATGCCTCTTCCTTTGAAGGTAGCCAGCCAAGAAGTAGATGCCTGATTGAGCCATACTGACCACCATGGACAGCAGCAACAGGAGGTCAAAGGCAAAGGTCAGGTATTCTTCTCCTGGCAGGTACACAGGGACAACGAAGGGCAGGCCCCAGATGAGGAAGCTGATGGCCACAAAGCGGACAATGTGGTAGATCCGGATGGGTGAACACTTCTTCAGGCAGCACAGGCTCCTGATGGTCAAAGTCAGGCTGGAAATGCCCATCACAAGACAAATAAGCATGTGAAATATTATAAAGCCTGCGTGAAATTGGTCACATGCCAAGCCCTTCTCCCAGTAGTCACAGACCTGGCTAACCACATGCAAAGAAAGGCCCAGGGCCCAGCTCAGGGCGCTCATCATGGCAGAGGTGTGTTTTGGGCGGTGGCAACACCAGGTGGGACAGAGGACACACAGAAAGCTCTCAATACTCATGGCCACCAGGAGACAGAGACCCACTGTGTCGGAGAAATAAGAGACAGGCTCCAGAAACACGGCCACCTGCAATGTCACCTGGTGATACAGCACGAGGATTTTCTCCAACAGGATCACAGTTACACAGGAGAGGTTGACCGTATCAGCAGCGGCCAGGTTAAGGATGTATGCCAGGTAGGGGTTGCTCCTGACCTGGGAGCAGAGGAGCCAGCAGACCACACCATTGCCCACCAGCCCACATGAAGCCACCAGTACTGTCAGGATGAAAACCACCTGTTTGCCCACCAACCACTCGCTTCCCGTATGACTCATGTTCATGTGTCCTGGGGTCTCTGTCCCGTTGTCCCAATCCGGCTTCCCAGAGAACATTGAGAGAAGCTGGGCCATGGTGGGCTGCCTTTGTTGCCTGGGCACACTCTGCAAAGACAAAGGTTGGTAACTTACCAGGTCTAGGAAGGAGAGTCAGGGTTGCCTTCTGACCTG-CTGGGCTTCCCAAGAGGGTCCTGCTGGGCCTCCCATGA-TTGGTGGGAATCTCACAGAGCAAAGTCAAGGAGAGGAATGAGTCTCCTGCGGGAGATCCATCCATCCCATATCCTCCATGGCAGGGTAC-CCTCTCCTGCTTGCCCCCATCCCTCTCTCCACCTCGTTCAGGTATTCTTGATGCTGTGCCCAACACC-AGGTGTGTATCCATGCGCCCAGGTGCCCATAAGGGAAAAAGGTGCATTTCTTTACCTTTGTTCTCCAACTCTCTCACTGACACAGACAGTTTTCATGGCATGGTTTTGGTGGAGGCATCAGGCAATTCCTCTACCCTAAGGCTCTGAGAGATTCTGAGTCCTGGATGGGGCAGTTGCTTTTCAGTGCTCTGGGGAAGGTCTACCCAATCTCTCTCCTGCTCACCTCCCCTCAATTCCTCACTTTCAGCACAAGGGCCTCCTGGTaggacctttatgctgttctgctgcctagaagggcctctgcacatccgtaagctttgtctcctctttccaatctttgccccgggatcaacttccagagaagcttctgctgatcatcctaataacattgcattcatcacatgctgtgtgtctatgcaaattacttacttacttacttttgcaggaatccctctgtggaaatggaagatttattggg-tttttattctcttcacaatgttgttcactaac-ttccccagctcctggaacagggtttgacacagaggagtcactTGGGTAGGGTGCCTATGGAGAGCTTTATGTAGGTCAGTTACACTTGAGGAAGTGCTGGTGACCTCTTCATGGAAGCAAACTTTGCTTCTGAATCATAGAAGCTTCTGGAACAAAGTTTGTTCCACAAACTTAT--TT---AAAAAAAA-------AAAGATTTCTTGGGGTCCCGAGGGAGACACGCACCTGAGCCCTGGGCTACATCCACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      69870 2838 +    290775 agtgtggtattgtccatggatggataaatagactgatggaatagagcagagggcccagagacagacccacaagagtccaaccgtgattGATCTCCAAGGAGGAGAGTGATGGTGAAGGGCTATATTTGTTATAATGTACTGAGGCCTTTGGATAGCTATTGGCTAAATGGGCCAAGTGGCCTTTTGGCTTAGGCTGAAGCAGGATAATAGTAATGTTATCTATTCATAAAATTGTT---AAAATTACCTGGTTTCATATTTGCAAAGTAATTAGAGCAGTATTGAGGTAAAGGGAAACTTCAGTGAACATTTCCTCTAGTCATAGTTGTTTCCACCACTTGACTTCCTGCCCTATTCAGAGTC--ATGTTTGCCAGAATTCAAGCACCTCCTTATGGGGCAGACTCCACAGGGCAtgatgtggtttgaatctgtgttccccacccaaatctcacatccat---------------ttggaggctgggcctggtgggaggtgattgaatcatggaggcagatttccccctcagtgctgctatcatgatagcgagtgagtgctcaccagatctgattgttccaaagtgtatagcacctctcccattgctctcttcctcctgctcctgccatgtgaagacgtgcctgcttcccctgcaccttctgccatgattgtaagtttcctgaggccttcccagccgtgcttcctatacagcctgtcaaactgtgagtcaatcaatcctgttttctttataaattacccagtctcagatatttctttatagcagtgtgagaacggaccaatacaGGGCATCATGATCAGTTCTGGGGAACAGTTTCCTGGAGTGGGAGGAGCTCCATCCTGGTAACCTGCTGTTCCCTTGCCTGAGACCCCTTGTCTCCTCCACCTTCCATCTCATTCAACAAAGCCCTTAGGAGAACAACCTTTAAGGACTCCCCATGCCTCTTCCTTTGAAGGTAGCCAGCCAAAAAGTAGATGGCTGATTGAGCCATACTGACTACCATGGACAGCAGCAACAGGAGGTCAAAGGCAAAGGTCAGGTATTCTTCTCCTGGCAGGTACACAGGGACAACTAAGGGCAGGCCCCAGATGAGGAAGCTGATGGCCACAAAGCGGACAATGTGGTAGATCCGGATGGGTGAACACTTCTTCAGGCAGCACAGGCTCCTGATGGTCAAAGTCAGGCTGGAAATGCCCATCACAAGACAAATAAGCATGTGAAATATTATAAAGCCTGCATGAAATTGGTCACATGCCAAGCCCTTCTCCCAGTACACACAGACCTGGCTAACCACATGCAAAGAAAGGCCCAGGACCCAGCTCAGGGCACTCATCATGGCAGAGGTGTGTTTTGGGCAGTGGCAACACCAGGTGGGACAGAGGACACGCAGAAAGCTCTCAATACTCATGGCCACCAGGAGACAGAGACCCACTGTGTCGGAGAAATAGGAGACAGGCTCCAGAAACACGGCCACCTGCAATGTCACTTGGTGATACAGCACGAGGATTTTCTCCAACAGGATCACAGTTACACAGGAGAGGTTGACCATATCAGCAGCGGCCAGGTTAAGGATGTATGCCATGTAGGGGTTGCTCCTGACCTGGGAGCAGAGGAGCCAGCAGACCACACCATTGCCCACCAGCCCACATAAAGCCACCAGCACTGTCAGGATGAAAACCACCTGTTTGCCCACCAACCACTCGCCTCCCGTATGACTCATGTTCATGTGTCCTGGGGTCTCTGTCCTGTTGTCCCAATCCGGCTTCCCAGAGAACATTGAGAGAAGCTGGGCCGTAGTGGGCTGCCTTTGCTGCCTGGGCACACTCTGCAAAGACAAAGGTTGGTAACTTACCAGGTCTAGGAAGGAGAGTCAGGGTTGCCTTCTGACCTG-CTGGGCTTCCCAAGAGGGTCCTGCTGGGCCTCCCATGA-TTGGTGGGAATCTCACAGAGCAAAGTCAAGGAGAGGAATGAGTCTCCTGTGGGAGATCCATCCATCCCATATCCTCCATGGCAGGGTAC-CCTCTCCTGCTTGCCCCCATCCCTCTCTCCACCTCGTTCAGGTATTCTTGATGCTGTGCCCAACACC-AGGTGTGTATCCATGCGCCCAGGTGCCCATAAGAGAAAAAGGTGCATTTCTTTACCTTTGTTCTCCAACTCTCTCACTGACACAGACAGTTTTCATGGCATGGTTTTGGTGGAGGCACCAGGCAATTCCTCTACCCTAAGGCTCTGAGAGATTCTGAGTCCCAGATGGGGCAGTTGCTTTTCAGTGCTCTGGGGAAGGTCTACCCAATCTCTCTCCTGCTCACCTCCCGTCAATTTCTCACTTTCAGCACAAGGGCCTCCTGGTaggacctttatgctgttctgctgcctagaagggcctctgcacatccgtaagctttgtctcctctttccaatctttgccccaggatcaacttccagagaagcttctgctgatcatcctattaacattgcaTTCATCACATGCTGTGTGTCTATGCAAAttacttacttacttacttttgcaggaatccctctgtggaaatggaagatttattggg-tttttattctcttcacaatgttgttcactaac-ttctccagctcctggaacagggtttgacacagaggagtcactTGGGTAGGGTGCCTATGGAGAGCTTTATGTAGGTCAGTTACACTTGGGGAAGTGCTGGTGACCTCTTCATGGAAGCAAACTTTGCTTCTGAATCATAGAAGCTTCTGGAACAAAGTTTGTTCCACAAACTGAT--TT--AAAAAAAAA-------AAAGATTTCTTGGGGTCCCGAGGGAGACACGCACCTGAGCCCTGGGCTACATCCACAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2499850 2831 -   3067355 agtgtggtattgtccatggatggataaatagactgatggaatagagcagagggcccagaaacagacccacaagagtccagcagtgattgatctccaaggaggagagTGATGGTGAAGGACTATGCTTGTTATAATGTGCTTGGGCCTTTGGATAGCTATTGGCTAAATGGGCCAAGTGGCCTTTTGGCTTAGGCTGAAGCAggataatagtaatgttatctattcatagaattgtt---aaaattacctggtttcatatttgcaaagtaattagagcagtATTGAGGTAAAGGGAAACTTTAGTGAACATTTCCTTTAGTCATAGTTGTTTCCACCACTTGACTTCCTGCCCTATTCAGAGTCTTATGTTTGCCAGGATTCAAGTACCTCCTTATGGGGCAGACTCCACAGGGCAtgatatggtttggatctgtgttccccacccaaatctcacgtccat---------------ttggaggttgggcctggtgggaggtgattgaatcatggaggcaggtttc-ccctcagtgctgctgtcatgatagcgagtgagtgctcacaagatctgattgtttcaaagtgtatagcacctctcccattgctctcttcctcctgctcctgccatgtgaagacgtgcctgcttccccttcaccttctgctacgactgtaagtttcctgaggccttcccagccgtgcttcctgtacagcctgtcaaactgtgagccaataaatcctcttttctttataaattacccagtctcagatatttctttatagcaatgtgagaacggaccaatacaGGGCATCATGATCAGTTCTGGGGAACAGTTTCCTGGAGTGGGAGGAGCTCTGTCCTGGTAACCTGCTGTTCCCTTGCCTGAGACCCCTTGTCTCCTCCACCTTCCATCTCATTCAACAAAGCCCTTAGGAGAACAACCTTTAAGGACTCCCCATGCCTCTTCCTTTGAAGGTAGCCAGCCAAGAAGTAGACGGCTGATTGAGCCATACTGACCACCATAGACAGCAGCAACAGGAGGTCAAAGGCAAAGGTCAGGTATTCTTCTCCTGGCAGGTACACAGGGACAACTAAGGGCAGGCCCCAGATGAGGAAGCTGATGGCCACAAAGCGGACAATGTGGTAGATCCGGATGGGTGAACACTTCTTCAGGCAGCACAGGCTCCTGATGGTCAAAGTCAGGCTGGAAATGCCCATCACAAGACAAATAAGCATGTGAAATATTATAAAGCCTGCGTGAAATTGGTCACATGCCAAGCCCTTCTCCCAGTACTCACAGACCTGGCTAACCACATGCAAAGAAAGGGCCAGGGCCCAGCTCAGGGCACTCATCATGGCAGAGGTGTGTTTTGGGCGGTGGCAACACCAGGTGGGACAGAGAACACACAGAAAGTACTCAATACTCATGGCCACCAGGAGACAGAGACCCACTGTGTCGGAGAAATAGGAGACAGGCTCCAGAAACACGGCCACCTGCAATGTCACCTGGTGATACAGCACGAGGATTTTCTCCAACAGGATCACAGTTACACAGGAGAAGTTGACCATATCAGCAGCAGCCAGGTTAAGGATGTATGCCATGTAGGGGCTGCTCCTGACCTGGGAGCAGAGGCGCCAGCAGACCACACCATTGCCCACCAGCCCACATAAAACCACCAGCACTGTCAGGATGAAAACCACCTGTTTGCCCACCAACCACTTGCCTCCCGTATGACTCATGTTCATGTGTCCTGGGGTCTCTGCCCCGTTGTCCCAATCCAGCTTCCCAGAGAACATTGAGAGAAGCTGGGCCATGGTGGGCTGCCTTTGCTGTCTGGGCACACTCTGCAAAGACAAAGGTTGGTAACTTACCAGGTCTAGGAAGGAGACTCAGGGTTGCCTTCTGACCTG-CTGGGCTTCCCAAGAGGGTCCTGCTGGGCCTCCCATGA-TTGGTGGGAATCTCACAGAGCAAAGTCAAGGAGAGGAATGAGTCTTTTGCAGGAGACCCATCCGTTCCATATCCTCCATGGCAGGGTAC-CCTCTCCTGCTTGCCCCCATCCCTCTCTCCACCTCATTCAGGTATTCTTGATGCTGTGCCCAACACC-AGGTGTGTATCCATGCGCCCAGGTGCCCATAAGGGAAAAAGGTGCATTTCTTTACCTTTGTTCTCCAACT--CTCACTGACACAGACAGTTTTCATGGCATGGTTTTGGTGGAAGCACCAGGCAATTCCTCTACCCTAAGGCTCTGAGAGATTCTGAGTCCTGGATGGGGCAGTTGCTCTTCAGTGCTCTGGGGAAGGTCTACCCAATCTCTCTCCTGCTCACCTCCCCTCAATTCCTCACTTTCAGCACAAGGGCCTCCTGGTaggacctttatactgttctgctgcccagaagggcctctgcacatctgtaagctttgtctcttctttccaatctttgccccaggatcaacttccagagaagcttctgctgatcatcctattaacattgcaTTCATCACATGCTGCGTGTCTGTGCAAAttacttacttacttacttttgcaggaatccctctgtggaaatggaagatttattggg-tttttattctcttcacaatgttgttcactaac-ttctgcagctcctggaacagggtttgacacagaggagtcactTGGATAGGGTGCCTATGGATAGCTTTATGTAGGTCAGTTACACTTGGGGAAGTGTTGGTGATCTCTTCATGGAAGCAAATTTTACTTCTGAATCATAGAAGCTTCTGGAACAAAGTTTGTTTCACAAACTGAT----------AAAAA-------AGAGGTTTCTTGGGGTCCCAAGGGAGACACGCACCTGAGCCCTGGGCTACATCCACAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            73009 2844 -    242197 agtgtggtgttattcaaggatgaataaatagactaatagaatagagcagaggacccagagacagactcacaAGAGTCCAAGTGTGATTGATCATCAAGGAGTAGAGTGATGGTGAAGGTCTATGTTTGTTATAATGTGCTGGGTTCATTTGATAACCACTGGCTAAGTGGGCCAAGTGGTCTTTTGTCTTAGGCTCAAACAGGATAATGATAATGTTATCTATTCATAGAATTGTTAAAAAAAATACCTGGTTTCATATTTACAAAGGAATTAGAGCAGTATCAAGGTAAAGGGAATCATCAGTGAACATTTGCTCTAGTCATAGTTGTTACCACCACTTGACTTCCTGCCCTATTCAGAGTCTTATGGCTGCCAGGACTCAAGCACCTCCTTATGGGGCAGACTCCACAGGACAtgatatgatttggatatgtgttccccacccaaatctcatgtccatttgtaattcccagtgttggaggtcaggcctaatagaaggtgattgaatcatggaagcagatttccccgtcagtgctgctctcataataacgagtgactgctcactagatctggttgtttcaaagtgtatggcacctgtccccttgctctcttcctcctgctcctgacatgtgaagacgtgcctccttcctcttcacctttcaccatgactgtaagtttcctaaggcctccccagccatgcttcctgtacagcctgtcaaactgtgagccaattaatcctaatttccttacaaattacccagtcttggatatttctctatagcaatgtgagaacaaaccaatacaGGGCATCACGGTCAGCCCTGGGGAACAGCTTCCCCATGTGGGAGGAGCTCAGTATCAGCAACCTGCTGTTCCCTTGCCTGAGATCTCTCGTTGCCTCTACCTTCCATTTCACTCAACAAGGCCCTTGGGAGAACAACCATTAAAGACTCAGTATGCCTCTTTCTTCTAAGATATCCAGTCAAGAAGTAGACAACTGGTTGAGCCATACTGACCACCACGGACAGCAGCAACAGGAGGTCAAAGGCAAAGGTCAAGTATTCTTCTCCTGGCAGGTAAGCAAGGACGACTAAGGGCAGGACCCAAACGAGGAAGCTGATGACCACAAAGCGAACAATGTGGTATATCCGGATGGGTGAACACTTCTTCAG---GCACAGGCTCCTGGTGGTCAAAGTCAGGCTGGACACGCCCATCACAAGAAACATAACCATGTGAAATATTATAAAGCCTGCATGGAATTGGTCACATTCCAAGCCCTTCTCCCAGTACTCACAGACCTGGCTAACTGCATGCAAAGAGAGGGCGAGGGCCCAGCTCAGGGCACTCATCATGGCAGAGGTGTGCTTTGGACGACGGCAGCACCATGTAGGACAGAGAACACACAGAAAGCTCTCAATATTCATGGCCACAAGGAGACAGAGACCCACTGTGTCAGAGAAATGAGAGACAGGCTCCAGAAACATGGCCATCTGCAGTGTTACCTGTTGATAGAGCATGAGAGTTTTCTCCAACAGCGTCACAGTTACACAGGAGAGGTTGACCATATCAGCAGCAGCCAGGTTAAGGATGTAGACCATGTAGGGGCTGCTCCTGATCTGGGAGCAGAGGAGCCAGCAGACCACACCATTGCCCGCCAGCCCACAGAGGGCCACCAGCACTGTCACAATGAAGACCACTTTTTCACCCACCAACCACTCGCTTCTTGTATGGCTCATGTTCACATGTCCTGGGGTCTCTGTCCCTTTGTCTCAATCCAACTCGCCAGAGAACATTGAGAGAAGCTGGGCCATCATGGGCTGAATTTGCTGCCTGGGCACACCCTGCAAAAATAAACGTTGGTAACTTACCAGGTCTAGGAAGAAGAATCAGGGTTGCCCTCTGCCCTGGTTGCGCTTTCCAAGAGGGACCTTCTGGGCATCCCAAGATTTGGTGGGAATCTCACAGAGCAAAGTCAAGGAGATAAGTGTGTCTCCTGCAGGAGATCCATCCCTCCTGTATCCTCCACTGAAGGA-ACTCCTCTCCTATTTGCACCCATTTCTCTCTCCACCTTGTTCAGGTATTCTTGATGCTGTGCCTAATACC-AGGTGTGTATACATGCACCCAGGTGCTCTATAAGGGGAAAGGTGCATTTCTTTACTTTTGTTCTCCAA--CTCTTACTGAC----ACAGTTTTCATAGCATGGTTTTAGTGAAGGCACCAGACAATTCCTCTATCCTAAGGTTCTGAGAGATTCTGAGTCCTGGATGGGGCAGTTGCTTTTCAGTGCCCTAGGGAAGGTCTACCCAACCTCTTTCCTGCTCACCTCCCCTCAATTCCTCTCTTTCAGCACAAGGGCCTCCTGGTAGGTCC-TTAtgctgttctgctgcctggaagggcctctgcatatctgtgagctttgt-ttctctttctaatctttgccccaggatcaccttccagagaagcttctgctgatcatcctaGTAACATTTCATTCATCACATGCTGAGTGTCTATGCA----ACGTACTTGCTTGCTCTTGCAGGAATCCTTCTATGGGAATGGAAGATTTATTGGG-ATTTTATTCTCCTCACAATGTTGTTCACTAAC-TTCTTCAGCTCCTGGAACAGGGTTAGACACAGATGAGTCACTTGAGTAGGGTGCCTATGGAGAGCTTCATATG---CAGTTACACTTGGGGAAGTGCTGGTGACCTCTTCATGGAAGCAATCTTTGCTTCTGAATCATAGAAGCTTCTGGAACAAAGCTTGTTCCACAAACTGAT--TTTAAAAAAAAAA-------AAAGGCATCTTGGTTTCCCGAGGGAGACAAGCACCTGAACCCTGGGCTACATCCACAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1          7 2840 -   1771730 agtgtggtgttatccaaggatgaataaatagactaatagaatagagcagaggacccagagacagactcacaagagtccaaatgtgattgatgaccaaggagcagagtgatggtgaaggactatgcttgttataatgtgctggggtcattcgataaccaCTGGCTAAGTGGGCCAAGTGGTCTTTTGGCTTAGGCTGAAGCAGGATAATGATAATGTTATCTAGTCATAGAATTGTT--ACAAAATACCTGGTTTCATATTTGCAAAGTAATTAGAGCAGCATTGAGGTAAAGGGAATCATCAGTGAACATTTGCTCTAGTCATAGTTGTTACCACCACTTGACTTCCAGCCCTATTCAGAGTCTTATGGCTGCCAGGTCTCAAGCACCTCCTTATGGGGCAGACTCCACAGGGCAtgatatggtttggatatgttttctccacccaaatctcatgtccatttgtaatccccagtgttggaggtcaggcctaatagaaggtgattgaatcatggaagcagatttcccc--cagtgctgctctc---ataacgagtgactgctcactagatctgattgtttcaaagtgcatggcacctgtccccttgctctcttcctcctgctcctgacatgtgaagacgtacctccttccccttcaccttccaccatgactgtaagcttcctaaggcctccccagccatgcttcctgtacagcctgtcaaaatgtgagccaattaatcctaatttccttatcaattacccagtcttggatatttctttatagcactgtgagaacaaaccaatccaGGGCATCATGGTCAGTCCTGGGGAACAGCTTCTCCATGTGGGAGGAGCTCAGTACCAGTAACCTGCTGTTCCCTTGCGTGAGACCCCTTGTTTCCTCTACCTTCCATTTCACTCAACAAGGCCCTTGGGAGAACAACCATTAAAGACTCAGTATGCCTCTTCCTTCTAAGATACCCAGTCAAGAAGTAGACAACTGGTTGAGCCATACTGACCACCATGGACAGCAGCAACAGGAGGTCAAAGGCAAAGGTCAAGTATTCTTCTCCTGGCAGGTAAGCAAGGACAACTAAGGGCCGGACCCAAACGAGGAAGCTGATGACCACAAAGCAAACAAAATGGTATATCCGGATGGGTGAACACTTCTTCAGGCAGCACAGGCTCCTGATGGTCAAAGTCAGGCTGGACATGCCCATCACAAGAAACATAATCATGTGAAATATTATAAAGCCTGCATGGAATTGGTCACATTCCAAGCCCTTCTCCCAGTACTCACAGACCTGGCTAACTGCATGCAAAGAGAAGGCGAGGGTCCAGCTCAGGGCACTCATCACGGCAGAGGTGTGTTTTGGATGACGGCAGCACCATGTAGGACAGAGGACACGCAGAAATCTCTCAATATTCATGGCCACCAGGAGACAGAGACCCACTGTGTCAGAGAAATGAGAGACAGGCTCCAGGAACATGGCCATCTGCAATGTCACCTGGTGATACAGCATGAGAGTTTTCTCCAACAGCATCACAGTTACACAGGAGAGGTTGACCATATCAGCAGCAGCCAGGTGAAGGATGTAGGCCATGTAGGGGCTGCTCCTGCCCTGGGAGCAGAGGAGCCAGAGGACCACACCATTGCCTACCAGCCCACAGAGGGCCACCAGCACTGTCACAATGAAGACCACCTGTTCACCCACCAACCACTCGCTTCTTGTATGGCTCATGTTCACATGTCCTGGGGTCTCTGTCCCTTTGTCTCAATCCAGCTCACCAGGGAACATTGAGAGAAGCTGGGCCATGGTGGGTTGAATTTTCTGCCTGGGCACACCCTGCAAAAACAAAGGTTGGTAACTTACCAGGTCTAGGAAGGAGAGTCAGGGTTGCCCTCTGCCCTGATTGGGCTTTCCAAGAGGG---TCCTGGGCATCCCAAGA-TTGGTGGGAATCTCACAGAGCAAAATCAAGGAGAGAAGTGTGTCTCCTGCGGGAAAACCATCCCTCCTGTATCCTCCACTGAAGGACACTCCTCTCCTACTTGCACCCATTCCTCTCTCCACCTTGTTCAGGTATTCTTGATGCTGTACCCAATACCTGGGTGTGTATACATGCACCCAGGTGCTCTATAAAGGAAAAGGTGAATTTCTTTACTTTTGTTCTCCAACTCTCTCACTGACACAGACAGTTTTCATAGCATGGTTTTAGTGGAGGCACCAGACAACTCCTCTAACCTAAGGTTCTGAGAGATTCTGAGTCCTGGTTGGGGCAGTTGCTTTTCAGTGCCCTAGGGAAGGTCTACCCAACCTCTTTCCCGCTCCCCTCCCCTCAATTCCTCTCTTTCAGCACAAGGGCCTCCTGGTAGGACC-TTAtgctgttctgctgcctggaagggcctctgcatatctgtgagctttgt-tcctctttctaatctttgccccaggatcaccttccagagaagcttttgctgatcatcctaGTAACATTTCGTTCATCACATGCTGAGTGTCTATGCA----ACGTACTTACTTGCTCTTGCAGGAATCCCTCTGTGGGAATGGAAGATTTATTAGG-TTTTTATTCTCCTCACAATGTTGTTCACTAAC-TTCTTCAGCTCCTGGAACAGGATTCGACACAGAGGAGTCACTTGGGTAGGGTGCCTATGGAAAGCTTTATATG---CAGTTACACTTGGGGAAGTGCTAGTGACCTCTTCATGGAAGCAA-CTTTGCTTCTGAATCATAGAAGCCTCTGGAATAAAGCTTGTTCCACAAACTAAT--TT---AAAAAAAA-------AGAGGCATCTTGGTTTCCCGAGGGAGACATGCACCTGAACCCTGGGCTACATCCACAA
i cebCap1.NW_016107755v1   N 0 C 0
s aotNan1.NW_018509740v1     118010 2845 -    457564 agtgtggtgttatccaaggatgaataaatagactgatagaatagagcagaggactgaaagacagacccacaAGAGTCCAAGTGTGATTGATCACCAAGGAGTAGAGTGATGGTGAAGGACTATGCTTGTTATAATGTGCTGGGGTCATTCGATAACCACTGGCTAAGT-GGCCAAGTGGTCTTTTGGCTTAGGCTGAAGCAGGATAATGATAATGTTATCTATTCATAGACTTGTTAAAAAAAATACCTGGTTTTATATTTGCAAAGTAATTAGAGCAGTATCAAGGTAAAGGGGATCATCAGTGAACATTTGCTCTAGTCATAGTTATTACCACCACTTGACGTCCTGCCCTATTCAGAGTCTTATGGCTGCCAGGACTCAAGCACCTCCTTATGGGGCAGACTCCACAGGGCAtgatatggtttggatctgtgttccccacccaaatctcatgtccatttgtaattcccagtgttggaggtcaggcctgatagaaggtgattgaatcatggaagcagatttccccctcagtgctgctctcataataacgagtgactgctcactagatctgattgtttcaaagtgtatggaatctgtcccattgctctcttcctcctgctcctgacatgtgaagatgtgcctccttccccttcaccttccaccatgactgtaagtttcctgaggcctccccagccatgcttcctgtacagcctgtcaaactgtgagccaattaatcctaatttccttataaattacccagtctcatatatttctttatagcaatgtgagaacaaaccaatacaGGGCATCATGGTCAGTCCTGGGGAACAGCTTCCCCAAGTGGGAGGAGCTCAGT-------ACCTGCTGTTCCCTTGCCTGAGACCCCTCGTTTCCTCTACCTTCCATCTCACTCAACAAGGCGCTTGGGAGAACAACCATTAAGGACTCAGTATGCCTCTTCCTTCTAAGGTACCCAGTCAAGAAGTAGACAACTGGTTGAGCCGTACTGACCACCATGGACAGCAGCAACAGGAGGTCAAAGCCAAAGGTCAAGTATTCTTCTCCTGGCAGGTAAGCAAGGACAACTAAGGGCAGGACCCAAAAGAGGAAGCTGATGACCACAAAGCAGACAATGTGGTATATCCAGATGGGTGAACACTTCTTCAGGCAGCACAGGCTCCTGACAGTCAAAGTCAGGCTGGACATGACCATCACAAGAAACATAACCATGTGAAATATTATAAAGCCTGCATGGAATTGGTCACATTCCAAGCCCTTGTCCCAGTACTCACAGACCTGGCTAACTGCATGCAAAGAAAGGGCAAGGGCCCAGCTCAGGGCACTCATCACGGCAGAGGTGTGCTTTGGATGACAGCAGTACCATGTAGAACAGAGGACACACACAAAGCTCTCAATATTCATGGCCACCAGGAGACAGAGACCCACTGTGTCAGAGAAATGAGAGACAGGCTCCAGAAACATGGCCATCTGCAATGTCACCTGCTGAAACAGCATGAGGATTTTCTCCAACAGCATCACAGTTACACAGGAGAGGTTGACCATATCAGCAGCAGCCAGGTTAAGGATGTAGGCCATGTAGAGGTTGCTCCTGACCTGGGAGCAGAGGAGCCAGCAGACCACACCATTGCCCACCAGCCCACAGAGGGCCACCAGCATTGTCACGATGATGACCACCTGTTCACCCACCAACCACTCACTTCTTGTATGGCTCATGTTCACATGTCCTGGGGTCTCTGCCCCTTTGTCTCAATCCAGCTTCCCAGAGAACATTGTGAGAAGCTGGGCCATGGTGGGCTGAATTTGCTGCCTGGACACACCCTGCAAAAACAAAGGTTGGTAACTTACCAGGTCTAAGAAGGAGAGTCAGGGTTGCCCTCGGCCCTGGTTGGGCTTTCCAAGAGGGTCCTTCTGGGCATCCCAAGA-TTGGTGGGAATCTCACAGAGCAAAGTCAGGTAGAGAAATGTGTCTCCTGTGGGAGAGCCATCCCTCCTGTATCCTCCACTGAAGGATACCCCTCTCCTACTTGCCTCTATCCCTCTCTCCACTTTGTTCAGGTATTCTTGATGCTGTGTCCAATACC-AGGTGTGTATACATGCACCCAGGTGCTCCATAAAGGAAAACGTGCATTTCTTTACTTTTGTTCTCCAACTCTCTCACTGAC----ACAGTTTTCATGGCATGGTTTTGATGGAGGCACGAGGCAACTCCTCTACCCTAAGGTTCTGAGAGATTCTGAGTCCTGGATGGGGCAGTTGCTTTTCAGTGCCCTAGGGAAAGTCCACccaaccactctcctgctcacctcccctcaattcctctctttcagcacaatggcctcctggtaggact-ttatgccattctactgcctggaagggcctctgcatatctgtgagctttgtctcctctttctaatctttgccccaggatcaccttccagagaagcttctgcttatcatcctaGTAACATTTCATTTATCACATGCTGAGTGTCTACGCA----ACATACTTACTTGCTCTCGCAGGAATCCCTCTGTGGGAATGGAAGATTTATTGAG-TTTTCATTCTCTTCACAATGTTGTTCATTAAT-TTCTTCAGCTCCTGGAACAGGGTTAGACACAGATGAGTCACTTGGGTAGGGTGCCTATGGAGAGCTTTATGTG---CATTTACACTTGGGGAAGTGTTGGTGACCTCTTCATGGAAGCAAGCTTTGCTT-TGAATCATAGAAGCTTCTGGAACAAAGCTTGTTCCACAAACTGAT--TT---AAAAAAAAGAGAGAGAGAGGCATCTTGGTTTCCCAAGGGAGACAAGCACCTGAACCCTGGGCTACATCCACAA
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I

a score=6318.000000
s hg38.chr6_GL000254v2_alt   805107 1 +   4827813 C
s panTro5.chr6             29768248 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30002864 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5806308 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29979596 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29643532 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2686982 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     438970 1 +    766320 C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28897177 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      72708 1 +    290775 C
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2502681 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            75853 1 -    242197 C
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1       2847 1 -   1771730 C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     120855 1 -    457564 A
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e nomLeu3.chr1a            74505820 143 + 122973662 I

a score=5522135.000000
s hg38.chr6_GL000254v2_alt   805108 643 +   4827813 AGGAGCAGGCACTCTCCTCCACATTGCCAATCACAGGTCTTTCTTTGTAGAATCATGAGGGGagggtgaccaacttatcctgctttgcctaggactttcccagtttaagctctgaacatctcttgtcctgaaaatcctcatagccctaggaaaaccaaggtggtttgttgcccAACTTGAAAGTTAAACAGGAGAAGGTCAGTACCCCTTCTGGAATCCCACAGCTTGGTTAAACCCAGTGATCTGAGGAGTTCATGCTGAGACTGTGAGAGCTGACCTCTTGGGGGCAAATCCCAGCTCTTTTTCATAGTAGCTGACTCTTTCTTTGCCTCAGCATCCCCATCTAAGTAAGGGCTGCtgctatgggatgaattgtattcttctaaattcatatgttgaactatcccagtacctcagaatgtgactgaatttggagacagggacattaaaggggtaattatgtttagatgggtc--attagggtaggccctaatccaatagggg---------------------------tagt-gtcttca-taagtaaaggagattaggacacagacacccacagggggatgaccatgagaagacacagggagaaggcagccatctacaagctaaggagagaggctttggaaagaaatgatcccggcaatctttggatctc
s panTro5.chr6             29768249 643 + 175400573 AGGAGCAGGCACTCTCCTCCACATTGCCAATCACAGGTCTTTCTTTGTAGAATCATGAGGGGagggttaccaacttatcctgctttgcctaggactttcccagtttaagctctgaacatctcttgtcctgaaaatcctcatagccctaggaaaaccaaggtggtttgttgcccAACTTGAAAGTTAAACAGGAGAAGGTCAGTACCCCTTCTGGAATCCCACAGCTTGGTTAAACCCAGTGATCTGAGGAGTTCATGCTGAGACTGTGAGAGCTGACCTCTTGGGGGCAAATCCCAGCTCTTTTTCATAGTAGCTGACTCTTTTTTTGCCTCAGCATCCCCATCTAAGTAAGGGCTGCtgctatgggatgaattgtattcttctaaattcatatgttgaactatcccagtacctcagaatgtgactgaatttggagacagggacattaaaggggtaattatgtttagatgggtc--attagggtaggccctcatccaatagggg---------------------------tagt-gtcttca-taagtaaaggagattaggacacagacacccacagggggatgaccatgagaagacacagggagaaggcagccatctacaagctaaggagagaggctttggaaagaaatgatcccggcgatctttggatctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30002865 643 + 173848474 AGGAGCAGGCACTCTCCTCCACATTGCCAATCACAGGTCTTTCTTTGTAGAATCATGAGGGGagggtgaccaacttatcctgctttgcctaggactttcccagtttaagctctgaacatctcttgtcctgaaaatcctcatagccctaggaaaaccaaggtggtttgttgcccAACTTGAAAGTTAAACAGGAGAAGGTCAGTACCCCTTCTGGAATCCCACAGCTTGGTTAAACCCAGTGATCTGAGGAGTTCATGCTGAGACTGTGAGAGCTGACCTCTTGGGGGCAAATCCCAGCTCTTTTTCATAGTAGCTGACTCTTTTTTTGCCTCAGCATCCCCATCTAAGTAAGGGCTGCtgctatgggatgaattgtattcttctaaattcatatgttgaactatcccagtacctcagaatgtgactgaatttggagacagggacattaaaggggtaattatgtttagatgggtc--attagggtaggccctcatccaatagggg---------------------------tagt-gtcttca-taagtaaaggagattaggacacagacacccacagggggatgaccatgagaagacacagggagaaggcagccatctacaagctaaggagagaggctttggaaagaaatgatcccggcgatctttggatctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5806309 642 +   6154872 AGGAGCAGGCACTCTCCTCCACATTGCCAATCACAGGTCTTTCTTTGTAGAATCATGAGGGGagggtgaccaacttatcctgctttgcctaggactttcccagtttaagctctgaacatctcttgtcctgaaaatcctcatagccctaggaaaaccaaggtggtttgttgcccAACTTGAAAGTTAAACAGGAGAAGGTCAGTACCCCTTCTGGAATCCCACAGCTTGGTTAAACCCAGTGATCTGAGGAGTTCATGCTGAGACTGTGAGAGCTGACCTCTT-GGGGCAAATCCCAGCTCTTTTTCATAGTAGTTGACTCTTTTTTTGCCTCAGCATCCCCATCTAAGTAAGGGCTGCtgctatgagatgaattgtattcttctaaattcatatgttgaactatcccagtacctcagaatgtgactgaatttgaagacagggacattaaaggggtaattatgtttagatgggtc--attagggtaggccctaatccaatagggg---------------------------tagt-gtcttca-taagtaaaggagattaggacacagacacccacagggggatgaccatgagaagacacagggagaaggcagccatctacaagctaaggagagaggctttggaaagaaatgatcccggcgatctttggatctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74505963 642 + 122973662 AGGAGCAGGCACTCTCCTCCACATTGCCAATCACAGGTCCTTCTTTGTAGAATCATGCGGGGagggtgatcaacttgtcctgctttgcctaggactttcccagtttaagctctgaacatctcttgtcctgaaaatcctcatagccctaggaaaaccaaggtggtttgtcacccAACTTGAAAGTTAAACAGGAGAAGGTCAGTACCCCTTCTGGAATCCCACAGCTTGGTCAAACCCAGTGATCTGAGGAGTTCATGCTGAGACTGTGAGAGCTGACCTCTTGGTGGCAAATCCCAGCTCTTTTTCATAGTAGCTGACTCTTT-TTTGCCTCAGCATCCCCATCTAAGTAAAGGCTGTtgctatgggatgaattgtattcttctaaattcatatgttgaactatcccagtacctcagaatgtgactgaatttggagacagggacattaaaggggtaattatgtttagatgggtc--attagggtaggccctaatccaataggag---------------------------tagt-gtcttca-taagtaaaggagattaggacacagacacccacagagggatgaccatgagaagacacagggagaaggcagccatctacaagctaaggagagaggctttggaaagaaatgatcctggcgatctttggatctc
i nomLeu3.chr1a            I 143 C 0
s rheMac8.chr4             29979597 638 + 172585720 AGGAGCAGGCACTCTTCTCCACATTGCCAATCACAGGTCATTCTTTGTAGAATCATGCGGGGAGGGTGATCAACTTCTCCTGCTTTGCCTATGACTTTCACAGTTTGAGCTCTGAACATCTCTTCTCCTGAAAACCCTCATAGCCCTCAGAAAACCAAGGTGGTTTGTCACCCAACTTGAAAGTTAAACAGGAAAAGGTCAGTACCCCTTCTGGAATCCTATAGCTTGGTTAAACCCAGTGGTCTGAGGAGTTCATGCTGAGACTGTGAGAGCTGACCTCTTGGGGGCAAATCCCAGCTCTTTTTCATAGTAGCTGACTCTTG-TTTGCCTCAGCATCCCCATCTAAG----GGCTGTtgctgtggaatgaattgtattcttctaaattcatatgttgaactatcgcagtacctcaaaatgtgactgaatttggagacagggacattaaaggggtaattatgttaata-gggtc--attagggccgaccctaaccctattggat---------------------------taggagtgttca-taagcaaaggagattaggacacagacacccacagagggatgatcatgtgaagacacagggagaaggcggccacctacaagctaaggagagaggctttgaaaagaaatgatcccggcaatgttttgatctc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29643533 666 - 170955103 AGGAGCAGGCACTCTTCTCCACATTGCCAATCACAGGTCATTCTTTGTAGAATCATGCGGGGAGGGTGATCAACTTCTCCTGCTTTGCCTATGACTTTCACAGTTTGAGCTCTGAACATCTCTTCTCCTGAAAACCCTCATAGCCCTCAGAAAACCAAGGTGGTTTGTCACCCAACTTGAAAGTTAAACAGGAAAAGGTCAGTACCCCTTCTGGAATCCTACAGCTTGGTTAAACCCAGTGGTCTGAGGAGTTCATGCTGAGACTGTGAGAGCTGACCTCTTGGGGGCAAATCCCAGCTCTTTTTCATAGTAGCTGACTCTTG-TTTGCCTCAGCATCCCCATCTAAG----GGCTGTtgctgtggaatgaattgtattcttctaaattcatatgttgaactatcacagtacctcaaaatgtgactgaatttggagacagggacattaaaggggtaattatgtttagatgggtc--attagggtaggccctaatccaatagggttagggcctaccctaatgacccacttagtaggagtgttca-taagcaaaggagattaggacacagacacccacagagggatgatcatgtgaagacacagggagaaggcggccacctacaagctaaggagagaggctttgaaaagaaatgatcccggcaatgttttgatctc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2686983 666 -   2996164 AGGAGCAGGCACTCTTCTCCACATTGCCAATCACAGGTCATTCTTTGTAGAATCATGCGGGGAGGGTGATCAACTTCTCCTGCTTTGCCTATGACTTTCACAGTTTGAGCTCTGAACATCTCTTCTCCTGAAAACCCTCATAGCCCTCAGAAAACCAAGGTGGTTTGTCACCCAACTTGAAAGTTAAACAGGAAAAGGTCAGTACCCCTTCTGGAATCCTACAGCTTGGTTAAACCCAGTGGTCTGAGGAGTTCATGCTGAGACTGTGAGAGCTGACCTCTTGGGGGCAAATCCCAGCTCTTTTTCATAGTAGCTGACTCTTG-TTTGCCTCAGCATCCCCATCTAAG----GGCTGTtgctgtggaatgaattgtattcttctaaattcatatgttgaactattgcagtacctcaaaatgtgactgaatttggagacagggacattaaaggggtaattatgtttagatgggtc--attagggtaggccctaatccaatagggttacggcctaccctaatgacccacttagtaggagtgttca-taagcaaaggagattaggacacagacacccacagagggatgatcatgtgaagacacagggagaaggcggccacctacaagctaaggagagaggctttgaaaagaaatgatcccggcaatgttttgatctc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     438971 639 +    766320 AGGAGCAGGCACTCTTCTCCACATTGCCAATCACAGGTCGTTCTTTGTAGAATCATGCGGGGagggtgaccaacttctcctgctttgcctatgactttcccagtttgagctctgaacatctcttctcctgaaaaccctcatagccctcggaaaaccaaggtggtttgtcgcccAACTTGAAAGTTAAACAGGAAAAGGTCAGTACCCCTTCTGGAATCCTACAGCTTGGTTAAACCCAGTGGTCTGAGGGGTTCATGCTGAGACTGTGAGAGCTGACCTCTTGGGGGCAAATCCCAGCTCTTTTTCATAGTAGCTGACTCTTG-TTTGCCTCAGCATCCCCATCTAAG----GGCTGTtgctgtggaatgaattgtattcttctaaattcgtatgttgaactatcgcagtacctcaaaatgtgactgaatttggagacagggacattaaaggggtaattatgtttagatgggtc--attagggtaggccctaatccaataggag---------------------------taggagtgttca-taagcaaaggcgattaggacacagacacccacagagggatgatcatgtgaagacacagggagaaggcggccacctacaagctaaggagagaggctttgaaaagaaatgatcccggcaatgttttgagctc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28897178 639 -  71996105 AGGAGCAGGCACTCTTCTCCACATTGCCAATCACAGGTCATTCTTTGTAGAATCATGCGGGGagggtgaccaacttctcctgctttgcctatgactttcccagtttgaactctgaacatctcttctcctgaaaaccctcatagccctcagaaaaccaaggtggtttgtcgcccAACTTGAAAGTTAAACAGGAAAAGGTCAGTACCCCTTCTGGAATCCTACAGCTTGGTTAAACCCAGTGGTCTGAGGAGTTCATGCTGAGACTGTGAGAGCTGACCTCTTAGGGGCAAATCCCAGCTCTTTTTCATAGTAGCTGACTCTTG-TTTGCCTCAGCATCCCCATCTAAG----GGCTGTtgctgtggaatgaattgtattcttctaaattcatatgttgaactatcgcagtacctcaaaatgtgactgaatttggagacagggacattaaaggggtaattatgtttagatgggtc--attaggatagggcctaatccaataggag---------------------------taggagtgttca-taagcaaaggagattaggacacagacacccacagagggatgatcatgtgaagacacagggagaaggcggccacctacaagctaaggagagaggctttgaaaagaaatgatcccggcgatcttttgatctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      72709 639 +    290775 AGGAGCAGGCACTCTTCTCCACATTGCCAATCACAGGTCGTTCTTTGTAGAATCATGCGGGGagggtgaccaacttctcctgctttgcctatgactttcccagtttgagctctgaacatctcttctcctgaaaaccctcatagccctcggaaaaccaaggtggtttgtcgcccAACTTGAAAGTTAAACAGGAAAAGGTCAGTACCCCTTCTGGAATCCTACAGCTTGGTTAAACCCAGTGGTCTGAGGGGTTCATGCTGAGACTGTGAGAGCTGACCTCTTGGGGGCAAATCCCAGCTCTTTTTCATAGTAGCTGACTCTTG-TTTGCCTCAGCATCCCCATCTAAG----GGCTGTtgctgtggaatgaattgtattcttctaaattcatatgttgaactatcgcagtacctcaaaatgtgactgaatttggagacagggacattaaaggggtaattatgtttagatgggtc--attagggtaggccctaatccaataggag---------------------------taggagtgttca-taagcaaaggagattaggacacagacacccacagagggatgatcatatgaagacacagggagaaggcggccacctacaagctaaggagagaggctttgaaaagaaatgatcccggcaatgttttgatctc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2502682 638 -   3067355 AGGAGCAGGCACTCTTCTCCACATTGCCAATCACAGGTCGTTCTTTGTAGAATCATGCGGGtagggtgactaacttctcctgttttgcctatgactttcccagttcgagctctgaacatctcttgtcctgaaaaccctcatagccctcggaaaaccaaggtggtttgtcgcccAACTTGAAAGTTAAACAGGAAGACGTCAGTACCCCTTCTGGAATCCTACAGCTTGGTTAAACCCAGTGATCTGAGGAGTTCATGCTGAGACTGTGAGAGCTGACCTCTTGGGGGCAAATCCCAGCTCTTTTTCATAGTAGCTGACTCTTT-TTAGCCTCAGCATCCCCATCTAAG----GGCTGTtgctgtgggatgaattgtattcttctaaattcatatgttgaactatcgcagtacctcagaatgtgactgaatttggagacagggacattaaaggggtaattatgtttagatgggtc--actagggtaggccctaatccaattggag---------------------------tagt-gtcttca-taagcaaaggagattaggacacagacacccacagagggatgatcatgtgaagacacagggagaaggcggccacctacaggctcaggagagaggctttgaaaagaaataatcccggtgatcttttgatctc
i colAng1.NW_012115566v1   C 0 I 140
s saiBol1.JH378357            75854 640 -    242197 AGGAGCAGACACTCAGCTCCACATTACCAATTACAGGTCTTTCTTTGTAGAATCATGCAGGGagggtgaccaacttaccctgcttttcctggaacttttccagttttagctctgaacattgattgtcctgaaaatcctcatagacctaggaaaaccaaagtggttgatcacccAACTTGAAAGTTAAACAGGAGAAGGTCAGTACCCCTTCTGGAATCCCACAGCTTGATCAAACACAGTGGTCTGAAGAGTTTATGCTGAGACTGTGAGAGCTGACCTCTTGGGGGCAAATCCCAGCTCTTTTTCATAGTAGCTGGCTCTTT-TCTGTCTCAGTATCCTTATCTAAG----GGTTGTtgctatgggatgatttgccttcttctaaattcatctgttgaactatcccagtacctgagaatgtggctgaatttggagatagggacattaaaggggcaattgtgtttagacggctcagattaaggtaggccctaatccaattggac---------------------------tagt-gccttta-taagtagaggagattagaacacagacacctgcagagggatgaccatgtgaggacacagggagaaggcagccatctacaagccaaggagagaggctttggaaagaaataaccctgccgatctgttgatctc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1       2848 637 -   1771730 AGGAGCAGGCACTCAGCTCCACATTACCAATTACAGGTCTTTCTTTGTAGAATCATGCAAGGagggtgaccaacttaccttgcttttcctgggac--ttccagttttagctctgaacatcgattgtcttgaaaatcctcatagacctaggaaaaccatggtagttggtcacccAACTTGAAAGTTAAACAGGAGAAGGTCAGTACCCCTTCTGGAATCCCACAGCTTGATCAAACACAGTGGTCTGAAGAGTTCATGCTGAGACTGTGAGAGCTGACCTCTTGGGGGCAAATGCCAGCTCTTTTTCATAGTAGCTGACTCTTT-TCTGCCTCAGTATCCTTATCTAAG----GGTTGTtgctatgggatgatttgtattcttctaaattcatctg-tgaactatcccagtacctgagaatgtggctgaatttggagatagggacattaaaggggtaattgtgtttagatggctcagattagggtaggccctaatccaataggac---------------------------tagt-gcattta-taagtagaagagattagaacacagacacccacagagggatgaccatgtgaggacacagggagaaggcagccatctacaagccaaggagagaggctttggaaagaaatgaccctgttgatcttttgatctc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     120856 641 -    457564 AGGAGCAGACACTCAGCTCCACATTACCAATCACAGGTCTTTCTTTGTAGAATCATGCAGGGaaggtgaccaacttaccctgctttgcctgggacttttccagtttaagctgtgaacattgcttgccctgaaaatcctcatagacctaggaaaaccaaggtggttggtcatccAACTTGAAAGTTAAACAGGAGAAGGTCAATACCCCTTCTGGAATCCCACAGTTTGATCAAAGCCAGTGGTCTGAAGAGTTCATGTTGAGACTGTGAGAGCTGACCTCTCGGGGGCAAATCCCAGCTCTTTTTCATAGTAGCTGACTCTTT-TCTGCCTCAGTATGCTTATCTAAG----GGCTGTGgctatgagatgatttgtattcttcaaaattcatatgttgaactatcccagtacctgagaatgtggctgaatttggagatagggacattaaaggggtaattgtgtttagatggctcagattagggtaggccctaatccaataggac---------------------------tagt-gccttcattaagtagaggagattagaacacagacacccacagagggatgaccatgtgaggacacagggagaaggcagccatctacaagccaaggagaaaggcttttgaaagaaatgaccctgatgatcttttgatctc
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I

a score=8281.000000
s hg38.chr6_GL000254v2_alt   805751 1 +   4827813 a
s panTro5.chr6             29768892 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30003508 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5806951 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74506605 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29980235 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29644199 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2687649 1 -   2996164 a
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     439610 1 +    766320 a
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28897817 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      73348 1 +    290775 a
i manLeu1.NW_012099233v1   C 0 C 0
s saiBol1.JH378357            76494 1 -    242197 a
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1       3485 1 -   1771730 a
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     121497 1 -    457564 a
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2503320 140 -   3067355 I

a score=3267683.000000
s hg38.chr6_GL000254v2_alt   805752 379 +   4827813 gactttcagcctcctaaaactgagagaatgaacttctgctgtttaagccactcagtctgtgatctctgtcatgggagccTGAACTGATGATCACATTTATGATGAAAAGTTTACAGACGGAATTATGGAAAGTCTCAGAACAGTGAGATCTACCTGGTTCTACAACCCTGAGCTGCTGAAGCTTTGCTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACAAACTA--ACTGATAAATGCCTGCGATATGCCTGGAAATATTCCACAGGTGACCTTGTGGCCTGCAGTCACATATTGGTGCATCAGCAGGGTTTAGGAGAATGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTTTGAATCTTCCCTCCTTGCTG
s panTro5.chr6             29768893 379 + 175400573 gactttcagcctcctaaaactgagagaatgaacttctgttgtttaagccactcagtctgtgatctctgtcatgggagccTGAACTGATGATCACATTTATGATGAAAAGTTTACAGACGGAATTATGGAAAGTCTCAGAACAGTGAGATCTACCTGGTTCTACAACCCTGAGCTGCTGAAGCTTCGCTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACAAACTA--ACTGATAAATGCCTGCGATATGCCTGGAATTATTCCACAGGTGACCTTGTGGCCTGCAGTCACATATTGGTGCATCAGCAGGGTTTAGGAAAATGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTTTGAATCTTCCCTCCTTGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30003509 378 + 173848474 gactttcagcctcctaaaactgagagaatgaacttctgttgtttaagccactcagtctgtgatctctgtcatgggagccTGAACTGATGATCACATTTATGATGAAAAGTTTACAGACGGAATTATGGAAAGTCTCAGAACAGTGAGATCTACCTGGTTCTACAACCCTGAGCTGCTGAAGCTTCGCTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTG-TCCACAAACTA--ACTGATAAATGCCTGCGATATGCCTGGAAATATTCCACAGGTGACCTTGTGGCCTGCAGTCACATATTGGTGCATCAGCAGGGTTTAGGAAAATGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTTTGAATCTTCCCTCCTTGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5806952 379 +   6154872 gactttcagcctcctaaaactgagagaatgaacttctgctgtttaagccactcagtctgtgatctctgtcatgggagccTGAACTGATTATCACATTTATGATGAAAAGTTTACAGACGGAATTATGGAAAGTCTCAGAACAGTGAGATCTACCTGGTTCTACAACCCTGAGCTGCCGAAGCTTCGCTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACAAACTA--ACTGATAAATGCCTGCAATATGCCTGGAAATATTCCACAGGTGACCTTGTGGCCTGCAGTCACGTATTGGTGCATCAGCAGGGTTTAGGAGAATGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTTTGAATCTTCCCTCCTTGCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74506606 369 + 122973662 gactttcagcctcctaaaacggagagaatgaacttctgttgtttaagccactcagcctgtgatctctgtcatgggaaccTGAACTGATGATCACATTTATGATGAAAAGTTTACAGACGGAATTATGGAAAGTCTCAGAACAGTGAGATCTACCTGGTCCTACAACCCTGAGCTGCTGAAGCTTCGCTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACA----A--ACTGACAAATGCCTGCGATATGCCTGGAAACATTCCACAGGTGACCTTGTGGCCTGCAGTCACATATTGGTGCATCAGTAGGGTTTAGGAGAATGCTAGGGA------CCAAGTGAGCCCAGTGTTTGAATCTTCCCTCCCTGCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29980236 375 + 172585720 gactttcagcttcctaaaactgagagaatgaacttctgttgcttaagccactcagtctgtgatctctgtcatgggagccTGAAGTGATGATCACATTTATGACGAAAACTTTACAGATGGAATTATGGAAAGTCTCAGAGCAGTGAGATCTACCTGGTTCTACAACCCTGAGCTGCTGAAGCTTCATTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACA----A--ACTGACAAATGCCTGCAATATGCCTGGAAATATCCCACAGGTGACCTTGTGGCCTGCAGTCACATACTGGTGCATCAGTAGGGTTTAGGAGAATGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTTTGAATCTTCCCTCCTTGCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29644200 375 - 170955103 gactttcagcttcctaaaactgagagaatgaacttctgttgcttaagccactcagtctgtgatctctgtcatgggagccTGAAGTGATGATCACATTTATGATGAAAACTTTACAGATGGAATTATGGAAAGTCTCAGAGCAGTGAGATCTACCTGGTTCTACAACCCTGAGCTGCTGAAGCTTCATTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACA----A--ACTGACAAATGCCTGCAATATGCCTGGAAATATCCCACAGGTGACCTTGTGGCCTGCAGTCACATACTGGTGCATCAGTAGGGTTTAGGAGAATGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTTTGAATCTTCCCTCCTTGCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2687650 375 -   2996164 gactttcagcttcctaaaactgagagaatgaacttctgttgcttaagccactcagtctgtgatctctgtcatgggagccTGAAGTGATGATCACATTTATGATGAAGACTTTACAGATGGAATTATGGAAAGTCTCAGAGCAGTGAGATCTACCTGGTTCTACAACCCTGAGCTGCTGAAGCTTCATTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACA----A--ACTGACAAATGCCTGCAATATGCCTGGAAATATCCCACAGGTGACCTTGTGGTCTGCAGTCACATACTGGTGCATCAGTAGGGTTTAGGAGAATGCTAGAGACCAGCTCCAAGTGAGCCCAGTGTTTGAATCTTCCCTCCTTGCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     439611 375 +    766320 gactttcagcttcctaaaactgagagaatgaacttctgttgcttaagccactcagtctgtgatctctgtcatgggagccTGAACTGATGATCACATTTATGATGAAAACTTTACAGATGGAATTATGGAAAGTCTCAGAACAGTGAGATCTACCTGGTTCTACAACCCTGAGCTGCTGAAGCTTCACTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACA----A--ACTGACAAATGCCTGCGATATGCCTGGAAATATCCCACAGGTGACCCTGTGGCCTGCAGTCACATATTGGTGCATCAGTAGGGTTTAGGAGAATGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTTTGAATCTTCCCTCCTTGCCG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28897818 377 -  71996105 gactttcagcttcctaaaactgagagaatgaacttctgttgcttaagccactcagtctgtgatctctgtcatggaagccTGAACTGATGATCACATTTATGATGAAAACTTTACAGATGGAATTATGGAAAGTCTCAGAACAGTGAGATCTACCTGGTCCTACAACCCTGAGCTGCTGAAACTTCACTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACA----ATGCCTGACAAATGCCTGCGATATGCCTAGAAATATCCCACAGGTTACCTTGTGGCCTGCAGTCACATATTGGTGCATCAGTAGGGTTTAGGAGAATGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTTTGAATCTTCCCTCCATGCCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      73349 375 +    290775 gactttcagcttcctaaaactgagagaatgaacttctgttgcttaagccactcagtctgtgatctctgtcatgggagccTGAACTGATGATCACATTTATGATGAAAACTTTACAGATGGAATTATGGAAAGTCTCAGAACAGTGAGATCTACCTGGTTCTACAACCCTGAGCTGCTGAAGCTTCACTTCTGAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACA----A--ACTGACAAATGCCTGCGATATGCCTGGAAATATCCCACAGGTGACCCTGTGGCCTGCAGTCACATATTGGTGCATCAGTAGGGTTTAGGAGAATGCTAGGGACCAGCTCCAAGTGAGCCCAGTGTTTGAATCTTCCCTCCTTGCCG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2503460 375 -   3067355 gactttcagcttcctaaaactgagagaatgaacttctgttgcttaagccactcagtctatgatcgctgtcatgggagcctgaactgattatcacaTTTATGATGAAAACTTTACAGATGGAATTATGGAAAGTCTCAGAACAGTGAGATCTACCTGGTCCTACAACCCTGAGCTGCTGAAGCTTCACTTCTAAATCACAGAAGCTTCTAGAACAGAGCTTGTTCCACA----A--ACTGACAAATGCCTGTGATATGCCTGGAAATATCCCACAGATGACCTTGTGGCCTGCAGTCACATATTGGTGCATCAGTAGGGTTTAGGAGGATGCTAGGGATCAGCTCCAAGTGAGCCCAGTGTTTGAATCTTCCCTCCTTGCCG
i colAng1.NW_012115566v1   I 140 C 0
s saiBol1.JH378357            76495 372 -    242197 gacttccatcctcctagaactgagagaataaacttctgttgtttaagccactcagttggtgatctctgtcatgggagccTGAACTGAAGATCACATTTACAATGAA-ACTTTAGAGACAGAATTGTGAAAAGTCTCAGAACAGTGAGATCTACCTGGTCCTACAACCCTGAGCTGCTGAAGCTTCACTTCTGAATCACAGAAGGTTCTAGAAC--AACTTGTTCCACA----A--ACTGATAAAAGCCTGTAAGATGCCTGGAAATATTCCACAGGTAACCTTGTGACCTGCAGTCACATATTAGTGCATCTTGGGGTTTCAGGAGAATGCTATGGACCAGTGCCAAGTGAGCTCAGTGTTTGAATCTTCCCTCCTTGCCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1       3486 362 -   1771730 gacttccatcctcctagaactgagagaataaacttctgttgtttaagccactcagtcggtgatctctgtcatgggagccTGAACTGAAGATCACATTTATGATGAA-ACTTTAGAGATAGAATTGTGAAAAGTCTCAGAACAGTGAGATCTACCTGGTCCTACAACCCTGAGCTGCTGAAGCTTCACTTCTGAATCAC----------AGAAC--AACTTGTTCCACA----A--ACTGATAAAAGCCTGTGAGATGCCTGGAAATATTCCACAGGCAACCTTGTGACCTGTAGTCACATATTAGTGCATCTTGGGGTTTCAGGAGAATGCTAGGGACCAGTGCCAAGTGAGCTCAGTGTTTGAATCTTCCCTCCTTGCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     121498 372 -    457564 gacttctatcctcctagaactgagagaataaacttctgttgtttaagccactcagtcagtaatctctgtcatgggagccTGAACTGAAGATCACATTTATGATGAA-ACTTTAGAGACAGAATTGTGAAAAGTCTCAGAACAGTGAGATCTACCTGGTCCTACAACCCTGAGCTGCTGAAGCTTCACTTCTGAATCACAGAATCTTCTAGAAC--AACTTGTTCCACA----A--ACTGATAAAAGCCTGTGAGATGCATGGAAATATTCCAAAGGCAACCCTGTGACCTGCAGTCACATATTAGTGCATCTTGGGGTTTCAGGAGAACCCTAGAGACCAGTGCCAAGTGAGCCCAGTGTTTAAATCTTCCCTCCTTGCCA
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I

a score=1411175.000000
s hg38.chr6_GL000254v2_alt   806131 192 +   4827813 GGATGATGGAGTCCCCTTCAGTTGGCAGCTCTCTTGAAATGGAAGGGTCCAGCCCCAGCCCCTCCCCTCCCTGCACTTGTTACCTAGACACTCTTACCTGAGGCCA-GGGAGGACCGCAGATCTGGCTCAGATCTAATCTGGTCATAGGATGAGTCTTGGGGCTTGGTAACATTGGTGCCCATGGAAACATCA
s panTro5.chr6             29769272 192 + 175400573 GGATGATGGAGTCCCCTTCAGTTGGCAGCTCTCTTGAAATGGAAGGGTCCAGCCCCAGCCCCTCCCCTCCCTGCACTTGTTGCCTAGACACTCTTATCTGAGGCCA-GGGAAGACCGCAGATCTGGCTCAGTTCTAATCTGGTCATAGGATGAGTCTTGGGGCTTGGTAACATTGGTGCCCATGGAAACATCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30003887 192 + 173848474 GGATGATGGAGTCCCCTTCAGTTGGCAGCTCTCTTGAAATGGAAGGGTCCAGCCCCAGCCCCTCCCCTCCCTGCACTTGTTGCCTAGACACTCTTATCTGAGGCCA-GGGAAGACCGCAGATCTGGCTCAGTTCTAATCTGGTCATAGGATGAGTCTTGGGGCTTGGTAACATTGGTGCCCATGGAAACATCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5807331 192 +   6154872 GGATGATGGAGTCCCCTTCAGTTGGCAGCTCTCTTGAAATGGAAGGGTCCAGCCCCAGCCCCTCCCCTCCCTGCACTTGTTGCCTAGACACTCTTATCTGAGGCCA-GGGAGGACCGCAGATCTGGCTCAGATCTAATCTGGTCATAGGATGAGTCTTGGGGCTTGGTAACATTGGTGCCCATGGAAACATCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             29980611 192 + 172585720 GGATGATGGAGTCCCCTTCAGTCAGCAGCTTTCTTAAAATGGAAGGGTCCAGCCCTAGCCACTCCCCTCCCTGCGCTTGTTGCCTAGACTCTCTTATCTGAGGCCA-GAGAGGACCGCAGATATGGCTCAGATCTAATCTGGTCATAGGATGAGTCTTGGGGCTTGGTAACATTGGTGCCCATGGAAACATCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29644575 192 - 170955103 GGATGATGGAGTCCCCTTCAGTCAGCAGCTTTCTTAAAATGGAAGGGTCCAGCCCTAGCCACTCCCCTCCCTGCGCTTGTTGCCTAGACTCTCTTATCTGAGGCCA-GAGAGGACCGCAGATATGGCTCAGATCTAATCTGGTCATAGGATGAGTCTTGGGGCTTGGTAACATTGGTGCCCATGGAAACATCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2688025 192 -   2996164 GGATGATGGAGTCCCCTTCAGTCAGCAGCTTTCTTAAAATGGAAGGGTCCAGCCCTAGCCACTCCCCTCCCTGCGCTTGTTGCCTAGACTCTCTTATCTGAGGCCA-GAGAGGACCGCAGATATGGCTCAGATCTAATCTGGTCATAGGATGAGTCTTGGGGCTTGGTAACATTGGTGCCCATGGAAACATCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     439986 192 +    766320 GGATGATGGAGTCCCCTTCAGTCAGCAGCTTTCTTAAAATGGAAGGGTCCAGCCCTAGCCACTCCCCTCCCTGCGCTTGTTGCCTAGACTCTCTTATCTGAGGCCA-GAGAGGACCGCAGATATGGCTCAGATCTAATCTGGTCATAGGATGAGTCTTGGGGCTTGGCAACATTGGTGCCCATGGAAACATCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28898195 192 -  71996105 GGATGATGGAGTCCCCTTCAGTCAGCAGCTTTCTTAAAATGGAAAGGTCCACCCCTAGCCACTTCCCTCCCTGCGCTTGTTGCCTAGACTCTCTTATCTGAGGCCA-GAGAGGACCGCAGATATGGCTCAGATCTAATCTGGTCATAGGATGAGTCTTGGGGCTTGGTAACAGTGGTGCCCATGGAAACATCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      73724 192 +    290775 GGATGATGGAGTCCCCTTCAGTCAGCAGCTTTCTTAAAATGGAAGGGTCCAGCCCTAGCCACTCCCCTCCCTGCGCTTGTTGCCTAGACTCTCTTATCTGAGGCCA-GAGAGGACCGCAGATATGGCTCAGATCTAATCTGGTCATAGGATGAGTCTTGGGGCTTGGCAACATTGGTGCCCATGGAAACATCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2503835 192 -   3067355 GGATGATGGAGTCCCCTTCAGTCAGCAGCTCTCTTGAAATGGAAGGGTCCAGCCCTAGCCCCTCCCCTCCCTGAATTTGTTGCCTAGACTCTCTTATCTGAGGCCA-GAGAGGACCACAGATATGGCTCAGATCTAATCTGGTCATAGGATGAGTCTTGGGGCTTGGTAACATTGGTGCTCATGGAAACATCA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            76867 192 -    242197 GGATGATGGTGTTCCCTAAGGTCAGTGGCTCAGTTGAAATGGAAGGATACAGCCTCAGACCAT-CTTTCTGTGTGTTTATTGCCTAGGCTCTCTTATCTGAGGCTAGGGGAGGACTGCAGATCTGGCTCAGATCTAATCTGGTCATAGGATGAGTCTTGGGACTTGGTAACATTGGTGCCCTTGGAAACATCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1       3848 192 -   1771730 GGATGATGGAGTTCCCTAAGGTCAGTGGCTCAGTTGAAATGGAAGGGTCCAGCCCCAGTCAAT-CCTTCTCTGTGCTTATTGCCTAGACTCTCTTATCTGAGGCCAGGGGAGGACTGCAGATCTGGCTCAGGTTTAATCTGGTCATAGGATAAGTCTTGGGACTTGGTAACATTGGTGCCATTGGAAACATCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     121870 191 -    457564 GGATGATGGAGTTCCCTTCAG-CAATGGCTCAGTTGAAATGGAAGGGTCAGGCCCCAGTCCAT-CCTTCTCTGTGCTTATTGCCTAGACTATCTTATCTGAGGCCAGGGGAGGACTGCAGATCTGGCTTAGATCTAATCTGGTCATAAGATGAGTCTTGGGACTTGGTAACATTGGTGCCCTTGGAAACATCA
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e nomLeu3.chr1a            74506975   0 + 122973662 C

a score=622000.000000
s hg38.chr6_GL000254v2_alt   806323 68 +   4827813 GGGTGACCTGCAGTTCTGTGCCTGGGCCAGGGTGTCAGAACTCGTGATGATGACAGAAGAGAAGCTGC
s panTro5.chr6             29769464 68 + 175400573 GGGTGACCTGCAGTTCTGTGCCTGGGCCAGGGTGTCAGAACTCGTGATGATGACAGAAGAGAAGCTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30004079 68 + 173848474 GGGTGACCTGCAGTTCTGTGCCTGGGCCAGGGTGTCAGAACTCGTGATGATGACAGAAGAGAAGCTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5807523 68 +   6154872 GGGTGACGTGCAGTTCTGTGCCTGGGCCAGGGTGTCAGAACTCATGATGATGACAGAAGAGAAGCTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74506975 68 + 122973662 GGGTGACCTGCAGTTCTGTGCCTGGGCCAGGGTGTCAGAACTCGTGATGGTGACAGAAGCGAATCTGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29980803 68 + 172585720 GGGTGACCTGCAGTTCTGTGCCTGGGTCAGGGTGTCAGAACTCGTGATGGTGACAGAAGAGAAGCTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29644767 68 - 170955103 GGGTGACCTGCAGTTCTGTGCCTGGGTCAGGGTGTCAGAACTCGTGATGGTGACAGAAGAGAAGCTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2688217 68 -   2996164 GGGTGACCTGCAGTTCTGTGCCTGGGTCAGGGTGTCAGAACTCGTGATGGTGACAGAAGAGAAGCTGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     440178 68 +    766320 GGGTGACCTGCAGTTCTGTGCCTGGGTCAGGGTGTCAGAACTCGTGATGGTGACAGAAGAGAAGCTGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28898387 68 -  71996105 GGGTGACCTGCAGTTCTGTGCCTGGGTCAGGGTGTCAGAACTCGTGATGGTGACAGAAGAGAAGCTGC
i chlSab2.chr17            C 0 I 8
s manLeu1.NW_012099233v1      73916 68 +    290775 GGGTGACCTGCAGTTCTGTGCCTGGGTCAGGGTGTCAGAACTCGTGATGGTGACAGAAGAGAAGCTGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2504027 68 -   3067355 GGGTGACCTGCAGTTCTGTGCCTGGGCCAGGGTGTCAGAACTCATGATAGTGACAGAAGAGAAGCTGC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            77059 68 -    242197 GGGTGACTTGTGGTTCTATGCCTGGGCTAGGGTGTCAGAACTCGTGATGATGACAGAAGAGAAGCTGC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1       4040 68 -   1771730 GAGTGACTTGTGGTTCTATGTCTGGGCTACGGTGTCAGAACTCATGATGATGACAGAAAAGAAGCTGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     122061 68 -    457564 GGGTGACTTGTGGTTCTGTGCCTGTGCTAGGGTGTCAGAACTCGTGATGCTGACAGAAGAGAAGCTGC
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I

a score=98541.000000
s hg38.chr6_GL000254v2_alt   806391 25 +   4827813 AAACAGACCTCCGTGGCCCACCCCA
s panTro5.chr6             29769532 25 + 175400573 AAACAGACCTCCGTGGCCCACCCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30004147 25 + 173848474 AAACAGACCTCCGTGGCCCACCCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5807591 25 +   6154872 AAACAGACCTCCGTGGCCCACCCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74507043 25 + 122973662 AAACAGACCTCTGTGGCCCACTCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29980871 15 + 172585720 AAACAGACCTCTGTG----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29644835 15 - 170955103 AAACAGACCTCCGTG----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2688285 15 -   2996164 AAACAGACCTCCGTG----------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     440246 15 +    766320 AAACAGACCTCCGTG----------
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099233v1      73984 15 +    290775 AAACAGACCTCCGTG----------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2504095 15 -   3067355 AAACAGACTTCCGTG----------
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            77127 25 -    242197 AAACAGGGCTCCGTGGCCCATCCCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1       4108 25 -   1771730 AAATAGGACTCCATGGCCCACCCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     122129 25 -    457564 AAACAGCACTCCGTGGCCCACCCCT
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e chlSab2.chr17            28898455  8 -  71996105 I

a score=10413946.000000
s hg38.chr6_GL000254v2_alt   806416 1198 +   4827813 GGCCACCAAGGCACCAAGCAGGAGCAGTTGGGCTCTGGTCCCCAACAAAGAAAGGAGATTTATAGATAAAAGAGTTTCAAGGGGAGAGGTGACTTACCCTTCAACAAAGAGAAAATGCCCATTTTGGAGGCAGCATGTGGCTTCAGGGACAGAGCCAGGCTTCCCATCCCTGGGCTCACTGAGACCTAGCTCATGCCCAGAGACCACTACTGAGGCCAGTGACTAAGCAGCACATTCTTCCTCATCACACAAGAGGAGGACACAGCCCTCCTGGGGTGGGAAGGCTTCAGTGCCTGGTGCAGCCCCAGCACTGGGCACAGAGAGATCCTAGCACCTGGAAATGTCATTTCCAAGTCGGGTCATGAGCCAAGCTCCCCAAGGAGCATAAACAACAAACAGGTTGGATCCTGGGATTCAGGGAGCCAGCTCTGATGGAAGTGCTCAGGTTGATGCAGCCAAAATAGCCAAGTAACCTTTGCATTGGGATTGAAGTACTTGCTCTGGTTCTGAGTTGAGAGCCCACCCTCCCCACTTAATCTTTATttgaggtgaaatttacataacacaaattaactaatttaaagggcacagttctgcctcacttagcaccttcacaatgttgtgcaacc-accacctctatctggttccaaaatatttacatacccccataagaaagccttttacctgttagcagttactccccttgtcttcctcctcccagctcttggcaaccccatctaccttccatttctgcacattcacctattctggacatgtcctattagtggaatcagaccctctgtgat-tttttgtctgtttctttcactcagcctcttgttttcatggcttcttcacagggtagcatgcataagaacttcattccttGCGTTAGATACAAACTAAATATGAATATAGAAGCTGTGAAATCAGAAGACCCAAAAGGATTTTCCTAGAAGTCATAGACTACACCTCAGTAATACAGTGGCTCAAATCCTACCTTTAACAGAATAACACACCCTCTGCCCATCTACACAGCTGGGGCATTTGTGAACCAGGGGCCAGGGCACAGTTGTGGCTCACCTGCTGGGACTACCCTGGAACCCCGAATCCTGCTTTCTCCAGGAACCTGGTTTCTGTCCTGTCCCCATTTTCCTGAGAAATGCACCTTCCCCAGT-AAAAAATCATGAGGTTTCAAATT
s panTro5.chr6             29769557 1197 + 175400573 GGCCACCAAGGCAACAAGCAGGAGCAGTTGGGCTCTGGTCCCCAACAAGGAAAGGAGATTTATAGATAAAAGAGTTTCAAGGGGAGAGGTGACTTACCCTTCAACAAAGAGAAAATGCCCACTTTGGAGGCAGCATGTGGCTTCAGGGACAGAGCCAGGCTTCCCATCCCTGGGCTCACTGAGACCTAGCTCATGCCCAGAGACCACTACTGAGGCCAGTGACTAAGCAGCACATTCTT-CTCATCACACAAGAGGAGGACACAGCCCTCCTGGGGTGGGAAGGCTTCAGTGCCTGGTGCAGCCCCAGCACTGGGCACAGAGAGATCCTAGCACCTGGAAATGTCATTTCCAAGTCGGGTCATGAGCCAAGCTCCCCAAGGAGCATAAACAACAAACAGGTTGGATCCTGGGATTCAGGGAGCCAGCTCTGATGGAAGTGCTCAGGTTGATGCAGCCAAAATAGCCAAGTAACCTTTGCATTGGGATTGAAGTACTTGCTCTGGTTCCGAGTTGAGAGCCCACCCTCCCCACTTAATCTTTATttgaggtgaaatttacataacacaaattaactaatttaaagggcacagttctgcctcacttagcaccttcacaatgttgtgcaacc-accacctctatctggttccaaaatatttacatacccccataagaaagccttttacctgttagcagttactccccttgtcttcctcctcccagctcttggcaaccccatctaccttccatttctgcacattcacctattctggacatgtcctattagtggaatcagaccctctgtgat-ttttcgtctgtttctttcactcagcctcttgttttcatggcttcttcacagggtagcatgcatcagaacttcattgcttGTGTTAGATACAAACTAAATATGAATATAGAAGCTGTGAAATCAGAAGATCCAAAAGGATTTTCCTAGAAGTCATAGACTACACCTCAGTAATACAGTGGCTCAAATCCTACCTTTAACGGAATAACACACCCTCTGCCCATCTACACAGCTGGGGCATTTGTGAACCAGGGGCCAGAGCACAGTTGTGGCTCACCTGCTGGGACTACCCTGGAACCCCGAATCCTGCTTTCTCCAGGAACCTGGTTTCTGTCCTGTCCCCATTTTCCTGAGAAATGCACCTTCCCCAGT-AAAAAATCATGAGGTTTCAAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30004172 1197 + 173848474 GGCCACCAAGGCAACAAGCAGGAGCAGTTGGGCTCTGGTCCCCAACAAGGAAAGGAGATTTATAGATAAAAGAGTTTCAAGGGGAGAGGTGACTTACCCTTCAACAAAGAGAAAATGCCCACTTTGGAGGCAGCATGTGGCTTCAGGGACAGAGCCAGGCTTCCCATCCCTGGGCTCACTGAGACCTAGCTCATGCCCAGAGACCACTACTGAGGCCAGTGACTAAGCAGCACATTCTT-CTCATCACACAAGAGGAGGACACAGCCCTCCTGGGGTGGGAAGGCTTCAGTGCCTGGTGCAGCCCCAGCACTGGGCACAGAGAGATCCTAGCACCTGGAAATGTCATTTCCAAGTCGGGTCATGAGCCAAGCTCCCCAAGGAGCATAAACAACAAACAGGTTGGATCCTGGGATTCAGGGAGCCAGCTCTGATGGAAGTGCTCAGGTTGATGCAGCCAAAATAGCCAAGTAACCTTTGCATTGGGATTGAAGTACTTGCTCTGGTTCCGAGTTGAGAGCCCACCCTCCCCACTTAATCTTTATttgaggtgaaatttacataacacaaattaactaatttaaagggcacagttctgcctcacttagcaccttcacaatgttgtgcaacc-accacctctatctggttccaaaatatttacatacccccataagaaagccttttacctgttagcagttactccccttgtcttcctcctcccagctcttggcaaccccatctaccttccatttctgcacattcacctattctggacatgtcctattagtggaatcagaccctctgtgat-ttttcgtctgtttctttcactcagcctcttgttttcatggcttcttcacagggtagcatgcatcagaacttcattgcttGTGTTAGATACAAACTAAATATGAATATAGAAGCTGTGAAATCAGAAGATCCAAAAGGATTTTCCTAGAAGTCATAGACTACACCTCAGTAATACAGTGGCTCAAATCCTACCTTTAATGGAATAACACACCCTCTGCCCATCTACACAGCTGGGGCATTTGTGAACCAGGGGCCAGAGCACAGTTGTGGCTCACCTGCTGGGACTACCCTGGAACCCCGAATCCTGCTTTCTCCAGGAACCTGGTTTCTGTCCTGTCCCCATTTTCCTGAGAAATGCACCTTCCCCAGT-AAAAAATCATGAGGTTTCAAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5807616 1198 +   6154872 GGCCACCAAGGCATTAAGCAGGAGCAGTTGGGCTCTGGTCCCCAACAAAGAAAGGAGATTTATAGATAAAAGAGTTTCAAGGGGAGAGGTGACTTACCCTTCAACAAAGAGAAAATGCCCACTTTGGAGGCAGCATGTGGCTTCAGGGACAGAGCCAGGCTTCCCATCCCTGGGCTCACTGAGACCTAGCTCATGCCCAGAGACCACTACTGAGGCCAGTGACTAAGCAGCACATTCTTCCTCATCACACAAGAGGAGGACACAGCCCTCCTGGGGTGGGAAGGCTTCATTGCCTGGTGCAGCCCCAGCACTGGGCACAGAGAGATCCTAGCACCTGGAAATGTCATTTCCAAGTCGGGTCATGAGCCAAGCTCCCCAAGGAGCATAAACAACAAACAGGTTGGATCCTGGGATTCAGGGAGCCAGCTCTGATGGAAGTGCTTAGGTTGATGCAGCCAAAATAGCCAAGTAACCTTTGCATTGGGATTGAAGTACTTGCTCTGGTTCTGAGTTGAGAGCCCACCCTCCCCACTTAATCTTTATttgaggtgaaatttacataacacaaattaactaatttaaagggcacagttctgcctcacttagcaccttcacaatgttgtgcaacc-accacctctatctggttccaaaatatttacatacccccataagaaagccttttacctgttagcagttactccccttgtcttcctcctcccagctcttggcaaccccatctaccttccatttctgcacattcacctattctggacatgtcctattagtggaatcaaaccctctgtgat-ttttcgtctgtttctttcactcagcctcttgttttcgtggcttcttcacagagtagcatgcatcagaacttcattccttGTGTTAAATACAAACTAAATATGAATATAGAAGCTGTGAAATCAGAAGATCCAAAAGGATTTTCCTAGAAGTCATAGACTACACTTCAGTAATACAGTGGCTCAAATCCTACCTTTAACAGAATAACACACCCTCTGCCCATCTACACAGCTGGGGCATTTGTGAACCAGGGGCCAGAGCACAGTTGTGGCTCACCTGCTGGGACTACCCTGGAACCCCGAATCCTGCTTTCTCCAGGAACCTGGTTTCTGTCCTGTCCCCATTTTCCTGAGAAATGCACCTTCCCCAGT-AAAAAATCATGAGGTTTCAAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74507068 1186 + 122973662 GGCCACCAAGGCACCAAGCAGGAGCAGTTGGGCTCTGGTCCCCAACAAGGAAAGGAGATTTATAGATAAAAGAGTTTT-GGGGGAGAGGTGACTTACCATTCAACAAAGAGAAAACACCCACTTTGGAGGCAGCATGTGGCTTCAGGGACAGAGCCAGGCTTCCCATCCCTGGGCTCACTGAGACCTAGCTCATGTCCAGAGACCACCACTGAGGCCAGTGACTAAGCAGCACATTCTTCCTCATCACACAGGAGGAGGACACAGCCCTCCTGGGGTGGGGAGGCTTCAGTGCCTGGTGCAGCCCCAGCACTGGGCACAGAGAGATCCTAGCACCTGGAAATGCCATTTCCAAGTCAGGTCATGAGCCAAGCTCCCCAAGGAGCATATACAACAAACAGGTTGGATCCTGGGATTTAGGGAGCCAGCTCTGATGGAAGTGCTCAGGTTGGTG-------------CAAGTAACATTTGCATTGGGATTGAAGTACTTGCTCTGGTTCTGAGTTGAGAGCCCACCCTCCCCACTTAATCTTTATttgaggtgaaatttacataacacaaattaagtaatttaaagtgcacagttctgcctcacttagcaccttcacaatgttgtgcaacc-accacctctatctagttccaaaatatttacatacccccacaagaaagccttttacctgttagcagttactccccttgtcttcctcctcccagcttttggcaacctcatctaccttccatttctgcacattcacctattccggacatgtcctattagtggaatcagaccctctgtgatctttttgtctgtttctttcactcagcctcttgttttcatggcttattcatggggtagcatgcatcagaacttcattccttGTGCTAGATACGAACTAAATATGAATATAGAAGCTGTAAAATCAGGAGATCCAAAAGGATTCTCCTAAAAGTCATAGACCACGCCTCAGTAATACAGTGGCTCAAATCCTGCCTTTAACAGCATAACACACCCTCTGCCCATTTACACAGCTAGGGCATTTGTGAACCAGGGGCCAGAGCGCAGTTGTGGCTCACCTGCTGGGACTACACTGGAACCCTGAACCCTGCTTTCTCCAAGAACCTGGTTTCTGTCCTGTCCCCATTTTCCTGAGAAATGCACCTTCCCCAGTGAAAAAATCATGAGGTTTCAAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29980886 1180 + 172585720 GGCCACCAGGGCACCAAGCAGGAGCAGCTGGGCTCTAGTCTCCAACCAGGAAAGGAGATTTATAGATAAAAGAGTTTCAGGGGGAGAGGTGACTTCCCCTTCAACAAAGAGAAAATACCCACTTTGGAGGCAACATGTGGCTTCAGGGGCAGAGCCAGGCTTCCCATCCCTGGGCTCACTGTGACCCAGTTCATGCCCAGAGACCACTACTGAGGCCAGTAACTAAGCAGCACATTCTTCGTCATCACACAGGAGGAAGACACAGCCCTCCTGCAG-------------------GGTGCGGCCCCAGTGCTGGGCACAGAGAGATCCTAGCTCCTGGAAATGTCATTTCCAAGTTGGGTCATGAGCCAAGCTCCCCAAGGAGCATATACAACACACAGGTTGGATCCTGGGATTCAGGGAGCCAGCTCTGATGGAAGTGCTCAGGTTGGTGCAGCCAAAATAACCAAGTAACTTTTCTATTGGGATTGAAGTACTTGCTCTGGTTCTGAGGTGAAAGCCCACTCTCCCCACTGAATCTTTATttgaggtgaaatttgcataacacaaattaaccaatctaaaatgcacagttctgcctcacttagcaccttcacaatgttgtgcaacc-accacctctatctagttccaaaatatttacatacctccacaagaaagctctgtatctgttagcagctactccccttgtgttcctcctcccagctcttggcaaccccatctaccttccatttctgcacattcacctattctggacatgtcctattagtggaaccagaccctctgtgatctttttgtctgtttctttcactcagcctcttgttttcacagcttattcacagggtagcatgcatcagaacttcattccttGTGTTAGACACGAACTAAATATGAATATAGAAGCCGTGAAATCAGAAGATCCAAAAGGATTTTCCTAGAAGTCCAAGACCACACCTCAGTAACACAGTGGCTCAAATCCTACCTTTAACAGAATAAAACACCCTCTGCCCATCTGCACAGCTGGGGCATTTGTGAACCAGCGGCCAGAGCGCAGTTGTGGCTCACCTGCTGGGACTACCCTGAAACCCCAAACCCTGCTTTCTCCAGGAAACTGGTTTCTGTCCTGTCCCCATTTTCCTGAGAAATGCACCTTCCCCAGT-AAAAAATCATGAGGTTTCAAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29644850 1180 - 170955103 GGCCACCAGGGCACCAAGCAGGAGCAGCTGGGCTCTAGTCTCCAACCAGGAAAGGAGATTTATAGATAAAAGAGTTTCAGGGGGAGAGGTGACTTCCCCTTCAACAAAGAGAAAATATCCACTTTGGAGGCAACATGTGGCTTCAGGGGCAGAGCCAGGCTTCCCATTCCTGGGCTCACTGTGACCCAATTCATGCCCAGAGACCACTACTGAGGCCAGTAACTAAGCAGCACATTCTTCGTCATCACACAGGAGGAAGACACAGCCCTCCTGCGG-------------------GGTGCGGCCCCAGTGCTGGGCACAGAGAGATCCTAGCTCCTGGAAATGTCATTTCCAAGTTGGGTCATGAGCCAAGCTCCCCAAGGAGCATATACAACACACAGGTTGGATCCTGGGATTCAGGGAGCCAGCTCTGATGGAAGTGCTCAGGTTGGTGCAGCCAAAATAACCAAGTAACTTTTCTATTGGGATTGAAGTACTTGCTCTGGTTCTGAGGTGAAAGCCCACTCTCCCCACTGAATCTTTATttgaggtgaaatttgcgtaacacaaattaaccaatctaaaatgcacagttctgcctcacttagcaccttcacaatgttgtgcaacc-accacctctatctagttccaaaatatttacatacctccacaagaaagctctgtatctgttagcagctactccccttgtcttcctcctcccagctcttggcaaccccatctaccttccatttctgcacattcacctattctggacatgtcctatcagtggaaccagaccctctgtgatctttttgtctgtttctttcactcagcctcttgttttcacagcttattcacagagtagcatgcatcagaacttcattccttGTGTTAGACACGAACTAAATATGAATATAGAAGCCGTGAAATCAGAAGATCCAAAAGGATTTTCCTAGAAGTCCAAGACCACACCTCAGTAACACAGTGGCTCAAATCCTACCTTTAACAGAATAAAACACCCTCTGCCCATCTGCACAGCTGGGGCATTTGTGAACCAGCGGCCAGAGCGCAGTTGTGGCTCACCTGCTGGGACTACCCTGAAACCCCAAACCCTGCTTTCTCCAGGAAACTGGTTTCTGTCCTGTCCCCATTTTCCTGAGAAATGCACCTTCCCCAGT-AAAAAATCATGAGGTTTCAAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2688300 1180 -   2996164 GGCCACCAGGGCACCAAGCAGGAGCAGCTGGGCTCTAGTCTCCAACCAGGAAAGGAGATTTATAGATAAAAGAGTTTCAGGGGGAGAGGTGACTTCCCCTTCAACAAAGAGAAAATAGCCACTTTGGAGGCAACATGTGGCTTCAGGGGCAGAGCCAGGCTTCCCATCCCTGGGCTCACTGTGACCCAGTTCATGCCCAGAGACCACTACTGAGGCCAGTAACTAAGCAGCACATTCTTCGTCATCACACAGGAGGAAGACACAGCCCTCCTGCGG-------------------GGTGTGGCCCCAGTGCTGGGCACAGAGAGATCCTAGCTCCTGGAAATGTCATTTCCAAGTTGGGTCATGAGCCAAGCTCCCCAAGGAGCATATACAACACACAGGTTGGATCCTGGGATTCAGGGAGCCAGCTCTGATGGAAGTGCTCAGGTTGGTGCAGCCAAAATAACCAAGTAACTTTTCTATTGGGATTGAAGTACTTGCTCTGGTTCTGAGGTGAAAGCCCACTCTCCCCACTGAATCTTTATttgaggtgaaatttgcataacacaaattaaccaatctaaaatgcacagttctgcctcacttagcaccttcacaatgttgtgcaacc-accacctctatctagttccaaaatatttacatacctccacaagaaagctctgtatctgttagcagctactccccttgtcttcctcctcccagctcttggcaaccccatctaccttccatttctgcacattcacctattctggacatgtcctattagtggaaccagaccctctgtgatctttttgtctgtttctttcactcagcctcttgttttcacagcttattcacagggtagcatgcatcagaacttcattccttGTGTTAGACACGAACTAAATATGAATATAGAAGCCGTGAAATCAGAAGATCCAAAAGGATTTTCCTAGAAGTCCAAGACCACACCTCAGTAACACAGTGGCTCAAATCCTACCTTTAACAGAATAAAATACCCTCTGCCCATCTGCACAGCTGGGGCATTTGTGAACCAGCGGCCAGAGCGCAGTTGTGGCTCACCTGCTGGGACTACCCTGAAACCCCAAACCCTGCTTTCTCCAGGAAACTGGTTTCTGTCCTGTCCCCATTTTCCTGAGAAATGCACCTTCCCCAGT-AAAAAATCATGAGGTTTCAAATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     440261 1194 +    766320 GGCCACCAGGGCACCAAGCAGGAGCAGCTGGGCTCTAGTCTCCAACCAGGAA---AGATTTATAGATAAAAGAGTTTCAGGGGGAGAGGTGACTTCCCCTTCAACAAAGAGAAAATATCCACTTTGGAGGCAACATGTGGCTTCAGGGGCAGAGCCAGGCTTCCCATCCCTGGGCTCACTGTGACCCAGTTCATGCCCAGAGACCACTACTGAGGCCAGTAACTAAGCAGCACATTCTTCGTTATCACACAGGAGGAAGACACAGCCCTCCTGCGG--GGAAGGCTTCAGTGCCTGGTGCGGCCCCAGTACTGGGCACAGAGAGATCCTAGCTCCTGGAAATGTCATTTCCAAGTTGGGTCATGAGCCAAGCTCCCCAAGGAGCATATACAACACACAGGTTGGATCCTGGGATTCAGGGAGCCAGCTCTGATGGAAGTGCTCAGGTTGGTGCAGCCAAAATAACCAAGTAACCTTTCCATTGGGATTGAAGTACTTGCTCTGGTTCTGAGGTGAGAGCCCACTCTCCCCACTGAATCTTTATttgaggtgaaatttacataacacaaattaaccaatctaaagtgcacagttctgcctcacttagcaccttcacaatgttgtgcaacc-accacctctatctagttccaaaatatttacatacctccacaagaaagctctgtatctgttagcagctactccccttgtcttcctcctcccagctcttggcaaccccatctaccttccatttctgcacattcacctattctggacatgtcctattagtggaaccagaccctctgtgatctttttgtctgtttctttcactcagcctcttgttttcacagcttattcacagagtagcatgcatcagaacttcattccttGTGTTAGACACGAACTAAATATGAATATAGAAGCCGTGAAATCAGAAGATCCAACAGGATTTTCCTAGAAGTCCAAGACCACACCTCAGTAACACAGTGGCTCAAATCCTACCTTTAACAGAATAAAACACCCGCTGCCCATCTGCACAGCTGGGGCATTTGTGAACCAGCGGCCAGAGCGCAGTTGTGGCTAACCTGCTGGGACTACCCTGGAACCCCAAACCCTGCTTTCTCCAGGAAACTGGTTTCTGTCCTGTCCCCATTTTCCTGAGAAATGCACCTTCCCCAGT-AAAAAATCATGAGGTTTCAAATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28898463 1198 -  71996105 GGCCACCAGGGCACCAAGCAGGAGCAGCTGGGCTCTAGTCTCCAACCAGGAAAGTAGATTTATAGATAAAAGAGTTTCAGGGGGAGAGGTGACTTCCCCTTCAACAAAGAGAAAATATCCACTTTGGAGGTAACATGTGGCTTCAGGGGCAGAGCCAGGCTTCCCATCCCCGGGCTCACTGTGACCCAGTTCATGCCCAGAGACCACTACTGAGGCCAGTAACTAAGCAGCACATTCTTTGTCATCACACAGGAGGAAGACACAGCCCTCCTGGGG--GGAAGGCTTCAGTGCCTGGTGCGGCCCCAGTACTGGGCACAGAGAGATCCTAGCTCCTGGAAATGTCATTTCCAAGTTGTGTCATGAGCCAAGCTCCCGAAGGAGCATATACAACACACAGGTTGGATCCTGGGATTCAGGGAGCCAGCTCTGATGGAAGTGCTCAGGTTGGTGCAGCCAAAATAACCAAGTAACCTTTCTATTGGGATTGAAGTACTTGCTCTGGTTCTGAGGTGAGAGCCCACTCTCCCCACTGAATCTTTATttgaggtgaaatttgcataacacaaattaaccaatctaaagtgcacagttctgcctcacttagcaccttcgcaatgttgtgcaaccaaccacctctatctagttccaaaatatttacatacctccacaagaaagctctgtatctgttagcagctactccccttgtcttcctcctcccagctcttggcaatcccatctaccttccatttctgcacattcacctattctggacatgtcctattagtggaaccagaccctctgtgatctttttgtctgtttctttcactcagcctcttgttttcacagcttattcacagggtagcatgcatcagaacttcattccttGTGTTAGACACGAACTAAATATGAATATAGAAGCCGTGAAATCAGAAGATCCAAAAGGATTTTCCTAGAAGTCCAAGACCACACCTCAGTAACACAGTGGCTCAAATCCTACCTTTAACAAAATAAAACACCCTCTGCCCATCTGCACAGCTGGGGCATTTGTGAACCAGCGGCCAGAGCGCAGTTGTGGCTCACCTGCTGGGACTACCCTGGAACCCCAAACCCTGCTTTCTCCAGGAAACTGGTTTCTGTCCTGTCCCCATTTTCCTGAGAAATGCACCTTCCCCAGT-AAAAAATCCTGAGGTTTCAAATT
i chlSab2.chr17            I 8 C 0
s manLeu1.NW_012099233v1      73999 1193 +    290775 GGCCACCAGGGCACCAAGCAGGAGCAGCTGGGCTCTAGTCTCCAACCAGGAA---AGATTTATAGATAAAAGAGTTTCAGGGGGAGAGGTGACTTCCCCTTCAACAAAGAGAAAATATCCACTTTGGAGGCAACATGTGGCTTCAGGGGCAGAGCCAGGCTTCCCATCCCTGGGCTCACTGTGACCCAGTTCATGCCCAGAGACCACTACTGAGGCCAGTAACTAAGCAGCACGTTCTTCGTCATCACACAGGAGGAAGACACAGCCCTCCTGCGG--GGAAGGCTTCAGTGCCTGGTGCGGCCCCAGTACTGGGCACAGAGAGATCCTAGCTCCTGGAAATGTCATTTCCAAGTTGGGTCATGAGCCAAGCTCCCCAAGGAGCATATACAACACACAGGTTGGATCCTGGAATTCAGGGAGCCAGCTCTGATGGAAGTGCTCAGGTTGGTGCAGCCAAAATAACCAAGTAACCTTTCCATTGGGATTGAAGTACTTGCTCTGGTTCTGAGGTGAGAGCCCACTCTCCCCACTGAATCTTTATttgaggtgaaatttacataacacaaattaaccaatctaaagtgcacagttctgcctcacttagcaccttcacaatgttgtgcaacc-accacctatatctagttccaaaatatttacatacccccacaagaaagctctgtatctgttagcagctactccccttgtcttcctcctcccagctcttggcaaccccatctaccttccatttctgcacattcacctattctggacatgtcctattagtggaaccagaccctctgtgatctttttgtctgtttctttcactcagcctcttgttttcacagcttattcacagggtagcatgcatcagaacttcattccttGTGTTAGACACGAACTAAATATGAATATAGAAGCCGTGAAATCAGAAGATCCAAAAGGATTTTCCTAGAAGTCCAAGACCACACCTCAGTAACACAGTGGCTCAAATCCTACCTTTAACAGAATAAAACACCCTCTGCCCATCTGCACAGCTGGGGCATTTGTGAACCAGCGGCCAGAGTGCAGTTGTGGCTCACCTGCTGGGACTACCCTGGAACCCCAAACCCTGCTTTCTCCAGGGAACTGGTTTCTGTCCTGTCCCCATTTTCCTGAGAAATGCACC-TCCCCAGT-AAAAAATCATGAGGTTTCAAATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2504110 1197 -   3067355 GGCCACCAGGGCACCAAGCAGGAGCAGCTGGGCTCTAGTCTCCAACCAGGAAAGGAGATTTATAGATAAAAGAGTTTCAGGGGGAGAGGTGACTTTCCCTTCAACAAAGAGAAAATATCCACTTTGGAGGCAACATGTGGCTGCAGGGGCAGAGCCAAGCTTCCCATCCCTGGGCTCACTGAGACCCAGTTCATGCCCAGAGACCACTACTGAGGCCAGTAACTAAGCAGCACATTCTTCATCATCACACAGGAGGAAGACACAGCCTTCCTGCGG--GGAAGGCTTCAGTGCCTGGTGCGGCCCCAGTACTGGGCACAGAGAGATCCTAGCACCTGGAAATGTCATTTCCAAGTTGGGTCATAAGCCAAGCTCCCCAAGGAGCATATACAACACACAGGTTGGATCCTGGGATTCAGAAAGCTAGCTCTGATGGAAGTGCTCAGGTTGGTGCAGCCAGAACAACCAAGTAACCTTTCCATTGGGATTGAAGTACTTGCTCTGGTTCTGAGGTGAAAGCCCAATCTCCCTACTTAATCTTTATttgaggtgaaatttacataacacaaattaaccaatctaaagtgcacagttctgcctcactcagcagcttcacaatgttgtgcaacc-accacctctatctagttccaaaatatttacatatccccacaagaaagctctgtacctgttagcagctactccccttgtcttcctcctcccagctcttggcaaccccatctaccttccatttctgcacattcacctattctggacatgtcctattattggaaccagaccctctgtgatctttttgtctgtttctttcactcagcctcttgttctcacagcttattcacagggtagcatgcatcagaacttcattccttGTGTTAGACACGAACTAAATATGAACATAGAAGCCGTGAAATCAGAAGATCCAAAAGGATTTTCCTAGAAGTCCAAGACCACACCTCAGTAACACAGTGGCTCAAATCCTACCTTTAACAGAATAAAACACCCTCTGCCCATCTGCACAGCTGGGGCATTTGTGAACCAGCGGCCAGAGAGCAGTTGTGGCTCACCTGCTAGGACTACCCTGGAACCCCACACCCTGCTTTCTCCCCGAAACTGGTTTCTGTACTGTCCCCATTTTCCTGAGAAATGCACCTTCCCCAGT-AAAAAATCACGAGGTTTCAAATT
i colAng1.NW_012115566v1   C 0 I 44848
s saiBol1.JH378357            77152 1192 -    242197 GGCCACCAGGGCACCAAGCAGGAGTGGTTGAGCTCTGGTCCCCAACAAGAAG---AGATTTATAGATAAAATAGTTTCAGGAAGAGAGGTGACTTCCCCTTCAGCAAAGAGAAAATATCTACTTTGGAGGCAGCATGAGGCTTCAGGGACAGAGCCAGGTTTCCCATTCCTGGGCTCACTGAGACCCAGCTTATCCCCAGAGACTACTAGTGAGGCCAGAGACTAAGCAGCACTTTCTTTATCATCACAAAGGAGGTGGACACAGATCTCCTGTGGTGGGAAGGCCTCACTGCCTGTTGCAGCCCTAGCACTGGTCACAGAGAGATCCTAGCACCTGGCAATGTCATTTCCAAGTCAGGTCATGAGCCAGGCCCCCCAAGAAGCATAAATGACAAACAGATTGGATCTTGGGATTCAGGGAGCTAGCTCTAATGGAAATGTTCAGGTTGGTGCAGCCAAAATAGCCAAGTAA-CTTTGCATTAGAATTGAAGTACTTGCTCTGTTTCTGAGGTGAGAGTCCACTCTTCCCACTTAATCTTTATttgagatgaaatttatataacacaaattaattaatttaaagtacacggttctgcctcatttagcacatttataatgttgtgcaacc-atcacatctatctagttccaaaataattacatacttccataagaaagccccgtacctgttagcagttactccctttttcttcctcctcccagctcttggcaaccccatctactttccatttctgcacattcacctattctggacatgtgctatgagtggaatcagactctctgtgatctttttgtctgtttctttcactcagcctcatgttttcatggcttagtcacagggtagcatgcatcagaacttcattccttATGTTAGATAAGAACTAAATATGAATATAGAAGCTGTGAAATCAAAAGAACCAAAAGGATCTTCCTAGAAGTCATAGACTACACCTCAGTAACACAGTGGCTCAAATCCTACCTTTAACAAAATAACGCATCCTCTGCCCATCCACACAGCTGGGGCATCTTTGAACAAGGAACTAGAGCACAGTAGTGGCTCACCTGCTGGGAGTATCCTGGAACCCCAAACCCTGCTTTCTTCAGGAACGTGGTTTCAGTCCTGTCCTCATTTCACTGAGAAATGCACCTTCCCCAGT-AAAAAATCAT---GTTTCAAATT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1       4133 1192 -   1771730 GGCCACCAGGGCACCAAGCAGGAGTGGTTGAGCTCTGGTCCCCAACAAGAAG---AGATGTATAGATAAAATAGTTTCAGGAAGAGAGGTGACTTCCCCTTCAGCAAAGAGAAAATATCCACTTTGAAGGCAGCATGAGGCTTCAGGGACAGAGCCAGGTTTCCCATCCCTGGGCTCACTGAGACCCAGCTTATCCTCAGAGACCACTAGTGAGGCCAGAGACTAAGCAGCACTTTCTTTCTCATCACAAAGGAGGTGGACACAGCCCTCCTGGGGTGGGAAGACCTCACTGCTTGCTGCAGCCCTAGCACTGGGCACAGAGAGATCCTAGCACCTGGCAATGTCATTTCCAAGTCAGGTCATGAGCCAGGCTCCCCAAGGAGCATATACAACAAACAGATTGAATCCTGGGATTCAAGGAGCTGGCTCTGATGGACGTGTTCAGGTTGGTGCAGCCAAAATAGCCAAGTAA-CTTTGCATTGGTATTGAAGTACTTGCTCTTGTTCTGAGGTAAGAGTCCACTCTCCCCACTTAATCTTTATttgagatgaaatttacataacacaaattaatcaatttaaagtacatagttctgcctcatttagcacaatcacaatattgtgcaacc-accacatctatctagttccaaaataattacatacttccataagaaagccctgtacctgtt---agttactccctttttattcctcctcccagctcttggcaaccccatctactttccatttctgcacattcacctattctggacatgtcctatgagtggaatcagaccctctgtgatctttttgtctgtttctttcactcagcctcatgttttcatggcttattcacagggtagcatgcatcagaacttcattccttATGTTAGATAAGAACTAAATATGAATATAGAAGCTGTGAAATCAAAAGAACCAAAAGGATTTTCCTAGAAGTCATAGACCACACCTCAGTAACACAGTGGCTCAAATCCTACCTTTAACAAAGTAGCACACCCTCTGCCCATCCACACTGCTGGGGCATCTGTGAACTAGGAACCAGAGCACAGTAGTGGCTCACCTGCTGGGAGTATCCTGGAACCCCAAACCCTGCTTTCTTCAGGAACATGGTTTCAGTCCTGTCCTCATTTTACTGAGAAATGCACATTCCCCAGT-AAAAAATCATGAGGTTTCAAATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     122154 1194 -    457564 GGCCACCAGGGCACCAAGCAGGAGTGGTTGAGCTCTGGTTCCCAACAAGAAG---AGATTTATAGATAAAAGAGTTTCAGGAAGAGAGATGACTTCCCCTTCAGCAAAGAGAAAATATCAACTTTGGAGGCAGCATGAGGCTTCAGGGACAGAGCCAGGCTTCCCATCCCCGGGCTGACTGAGACCCAGCTCAACC-CAGAGACCACTAGTGAGGCCAGAGACTAAGCAGCACTTTCTTTCTCATCACAAAGGAGGAGGACACAGCCCTTCTGGGGTGGGAAGGCCTCACTGCCTGCTGCAGCCCCAGCACTGGACACAGAGAGATCCTAGCACTTGGCAATGTCATTTCCAAGTCAGGTCATGAGCCAGGCTCCCCAAGGAGCATATACGACAAATAGGTTGGATCCTGGGATTCAGGGAGCTAGCTCTGATGGAAGCATTCAGGTTGGTGCAGCCAAAATAGCCAAGTAACCTTTGCATTGGTATTGAAGTACTTGCTCTGGTTCTGAGGTGAGAGTCCATTCTCCCCACTTAATCTTTATttgagatgaaacttacatcatacaaattaatcagtttaaagtccacagttctgcctcatttagcatgttcacaatgttatgcaacc-accacctctatctagttccaaaataattacatacttccataagaaagccctgtacctgttagcagttactccccttttcttcctcctcccagctcttggcaaccccatctactttccatttctgcacattcacctattctggacatgtcctgtgactggaatgagactctctgtgatctttttgtctgtttctttcactcagcctcatgttttcatggcttattcacagggtagcatgcatcagaacttcattccttGTGTTAGATAAGAACTAAATATGAATATAGAAGCTGTGAAATCAAAAGATCCAAAAGGATTTTCCTAGAAGTCATAGACCATGCCTCAGTAACACAGTGGCTCAAATCCTACCTTTAACAAAATAACACACCCTCTGCCCATCTACACAGCTCAAG-ATCCGTGAACCAGGGACCAGAGCACAGTAGTGGCTCACCTGTTGGGGGTATCCTGGAACCCCAAGCTCTGCTTCCTTCAGGAACGGGGTTTCTGTCCTGTGCTCATTTTACTGAGAAATGTACCTTCCCCAGT-AAAAAATCATGAGGTTTCAAATT
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I

a score=2352321.000000
s hg38.chr6_GL000254v2_alt   807614 315 +   4827813 CCAGGAAAATATGTCTCTGAGTTAAAATGGTTTGAAAATGAAAGAAGGAAGAGAGATCTTTTCTCATACCTGGGAAGTCTTGGATAGAATTGGTACCACAGAGGCCAATGTCCTGAGAGATGAAAGTTCTGCC----CACAGGTCAGGAAGCAATCTAACGATGTCTGATTTGAACTGGGTCCTGACAAGAGGTTGTCAATTTCTCTGTGTCTGTTGG-GTCTTCCTGTACTGGGGCAAATTGCATATCAGGGCCCAGGCCTTTATCTGAAACATTGTATCTCAGCATCTCCTGATATCCCCCATCCCA-CTGACACTTTT
s panTro5.chr6             29770754 315 + 175400573 CCAGGAAAATATGTCTCTGAGTTAAAATGGTTTGAAAATGAAAGAAGGAAGAGAGATCTTTTCTCATACCTGGGAAGTCTTGGATAGAATTGGTACCACAGAGGCCAATGTCCTGAGAGATGAAAGTTCTGCC----CACAGGTCAGGAAGCACTCTAACGATGTCTGATTTGAACTGGGTCCTGACAAGAGGTTGTCAATTTCTCTGTGTCTGTTGG-GTCTTCCTGTACTGGGGCAAATTGCATATCAGGGCCCAGGCCTTTATCTGAAACATTGTATCTCAGCATCTCCTGATATCCCCCATCCCA-CTGACACTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30005369 315 + 173848474 CCAGGAAAATATGTCTCTGAGTTAAAATGGTTTGAAAATGAAAGAAGGAAGAGAGATCTTTTCTCATACCTGGGAAGTCTTGGATAGAATTGGTACCACAGAGGCCAATGTCCTGAGAGATGAAAGTTCTGCC----CACAGGTCAGGAAGCACTCTAACGATGTCTGATTTGAACTGGGTCCTGACAAGAGGTTGTCAATTTCTCTGTGTCTGTTGG-GTCTTCCTGTACTGGGGCAAATTGCATATCACGGCCCAGGCCTTTATCTGAAACATTGTATCTCAGCATCTCCTGATATCCCCCATCCCA-CTGACACTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5808814 315 +   6154872 CCAGGAAAATATGTCTCTGAGTTAAAATGGTTTGAAAATGAAAGAAGGAAGAGAGATCTTTTCTCATACCTGGGAAGTCTTGGATAGAATTGGTACCACAAAGGCCAATGTCCTGAGAGATGAAAGTTCTGCC----CACAGGTCAGGAAGCACTATAATGATGTCTGATTTGAACTGGGTCCTGACAAGAGGTTGTCAATTTCTCTGTGTCTGTTGG-GTCTTCCTGTACTGGGGCAAATTGCATATCAGGGTCCAGGCCTTTATCTGAAACATTGTATCTCAGCATCTCCTGATATCCCCCATCCCA-CTGACACTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74508254 315 + 122973662 CCAGGAAAATGTGTTTCTGAGTTAAAATGGTTTGAAAATGAAAGAAGGAAGAGAGATCTTTTCTCATACCTGGGAAGTCTTGGATAGAATTGGTACCACGGAGGCCAGTGTCCCGAGAGATGAAAGTTCTGCC----CACAGGTCAGGAAGCTCTCTAACGATGTCTGATTTGAACTGGGTCCTGACAAGAGGTTGTCAATTTCTCTGTGTCTGTTGG-CTCTTCCTGTACTGGGGCAAATTGCAAATCAGGGCCCAGGCCTTTATCTGAAACATTGTATCTCAGCATCTCCTGATATCCCCCATCCCA-TTGACACTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29982066 309 + 172585720 CCAGGAAAA--TGTCTCTGAGTTAAAATGGTTTGAAAATGAAAGAAGGAAGAGAGATCTTTTCTCATACCTGGGAAGTCTTGGATAGAATTGGTACCACAGAGGCCAATGTCCCAAGAGATGAAAGTTCTGCC----CACAGGTCAGGAGGCACT----CGATGTCTGATTTGAACTGGGTCCTGACAAGAGGTTGTCAATTTCTCTGTGTCTGTTGG-GTCTTCCTGTACTGGGGCAAATAGCATATCAGGGCCCAGGCCTTTATCTGAAACATTGTATCTCAGCATCTTGTGGTATCCTCCATCCCA-CTAACACtttt
i rheMac8.chr4             C 0 I 115
s macFas5.chr4             29646030 309 - 170955103 CCAGGAAAA--TGTCTCTGAGTTAAAATGGTTTGAAAATGAAAGAAGGAAGAGAGATCTTTTCTCATACCTGGGAAGTCTTGGATAGAATTGGTACCACAGAGGCCAATGTCCCAAGAGATGAAAGTTCTGCC----CACAGGTCAGGAGGCACT----CGATGTCTGATTTGAACTGGGTCCTGACAAGAGGTTGTCAATTTCTCTGTGTCTGTTGG-GTCTTCCTGTACTGGGGCAAATAGCATATCAGGGCCCAGGCCTTTATCTGAAACATTGTATCTCAGCATCTTGTGGTATCCTCCATCCCA-CTAACACtttt
i macFas5.chr4             C 0 I 115
s macNem1.NW_012011356v1    2689480 309 -   2996164 CCAGGAAAA--TGTCTCTGAGTTAAAATGGTTTGAAAATGAAAGAAGGAAGAGAGATCTTTTCTCATACCTGGGAAGTCTTGGATAGAATTGGTACCACAGAGGCCAATGTCCCAAGAGATGAAAGTTCTGCC----CACAGGTCAGGAGGCACT----CGATGTCTGATTTGAACTGGGTCCTGACAAGAGGTTGTCAATTTCTCTGTGTCTGTTGG-GTCTTCCTGTACTGGGGCAAATAGCATATCAGGGCCCAGGCCTTTATCTGAAACATTGTATCTCAGCATCTTGTGGTATCCTCCATCCCA-CTAACACtttt
i macNem1.NW_012011356v1   C 0 I 115
s cerAty1.NW_012002711v1     441455 313 +    766320 CCAGGAAAA--CGTCTCTGAGTTAAAATGGTTTGAAAATGAAAGAAGGAAGAGAGATCTTTTCTCATACCTGGGAAGTCTTGGATAGAATTGGTACCACAGAGGCCAATGTCCCAAGAGATGAAAGTTCTGAC----CACAGGTCAGGAGGCACTCTAACGATGTCTCATTTGAACTGGGTCCTGACAAGAGGTTGTCAATTTCTCTGTGTCTGTTGG-GTCTTCCTGTACTGGGGCAAATAGCATATCAGGGCCCAGGCCTTTATCTGAAACATTGTATCTCAGCATCTTGTGGTATCCTCCATCCCA-CTAACACtttt
i cerAty1.NW_012002711v1   C 0 I 115
s chlSab2.chr17            28899661 313 -  71996105 CCAGGAAAA--TGTCTCTGAGTTAAAATGGTTTGAAAATGAAAGAAGGAAGAGAGATCTTTTCTCATACCTGGGAAGTCTTGGATAGAATTGGTACCACAGAGGCCAATGTCCCAAGAGATGAAAGTTCTGCC----CACAGGTCAGGAGGCACTCTAAGGATGTCTGATTTGAACTGGGTCCTGACAAGAGGTTGTCAATTTCTCTGTGTCTGTTGG-GTCTTCCTGTACTGGGGCAAATAGCATATCAGGGCCCAGGCCTTTATCTGAAACATTGTATCTCAGCATCTTGTGGTATCCTCCATCCCA-CTAACACtttt
i chlSab2.chr17            C 0 I 115
s manLeu1.NW_012099233v1      75192 313 +    290775 CCAGGAAAA--CGTCTCTGAGTTAAAATGGTTTGAAAATGAAAGAAGGAAGAGAGATATTTTCTCATACCTGGGAAGTCTTGGATAGAATTGGTACCACAGAGCCCAATGTCCCAAGAGATGAAAGTTCTGCC----CACAGGTCAGGAGGCACTCTAATGATGTCTGATTTGAACTGGGTCCTGACAAGAGGTTGTCAATTTCTCTGTGTCTGTTGG-GTCTTCCTGTACTGGGGCAAATTGCATATCAGGGCCCAGGCCTTTATCTGAAACTTTGTATCTCAGCATCTTGTGGTATCCTCCATCCCA-CTGACACtttt
i manLeu1.NW_012099233v1   C 0 I 121
s saiBol1.JH378357            78344 306 -    242197 CCAGGAAAATATGTCTCTGAGTTAAAATGGTTTGAAAATGAAAGAAGGTAGAGAGATCTTTTCTCATACCTGGGAAGTCTTGGATAGAATTGGTACCGCAGAGGCCAATGTTCCGAGAGATGAAAGTTCTGCC----CACGGGTCAGGAAGAACTCTAACACCGT----------CTGGGTCTTGTCAAGGGGTTATCAATTTCCCTGTGTTTGTTGAGGTCTTCCTGTACTGGGGCAAATTTCTTATGAGGGCCCAAGCCTTTATCTGAAACATTGTATCTCAGCATCTCTTGATCTACCCCATCAAATCTGACTA-TTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1       5325 316 -   1771730 CCAGGAAAATATGTCTCTGAGTTAAAATGGTTTGAAAATGAAAGAAGGTAGAGAGACCTTTTCTCATACCTGGGAAGTCTTGGATAGAATTGGTACCACAGAGGCCAATGTCCCAAGAGATGAAAGTTCTGCC----TACGGGTCAGGAAGAACCCTAACACTGTCTGATTTGAACTGGGTCCTGACAAGGGGTTATCAATTTCCCTGTGTTTGTTGA-GTCTTCCTGTACTGGGGCAAATTTCTTATCAGGGCGCAGGAGTTTATCTGAAACATTGTATCTCAGCATCTCTTGATCTACCCCATCAAACCTGACTCTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     123348 320 -    457564 CCAGGAAAATATGTCTCTGAGTTAAAATGGTTTGAAAATGAAAGAAGGTAGAGAGATCTTTTTTCATACCTGGGAAGTCTTGGATAGAATTGGTACCACAGAGGCCAATGTCCCGAGAGATGAAAGTTCTGCCCACACACAGGTCAGGAAGCATTCTAACACCCTCTGATTTGAACTGGGTCCTGACAAGGAGTTATCAATTTCCCTGTGTCTGTTGG-GTCTTCCTGTACTGGGACAAATTTCTTATCAGGGCCCAGGCCTTTATCTGAAACATTGTATCTCAACATCTCTTGATCTATCCCATCAAATCTGACTCTTTT
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I

a score=9338.000000
s hg38.chr6_GL000254v2_alt   807929 4 +   4827813 GATT
s panTro5.chr6             29771069 4 + 175400573 AATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30005684 4 + 173848474 AATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5809129 4 +   6154872 AATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74508569 4 + 122973662 AATT
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357            78650 4 -    242197 AATT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1       5641 4 -   1771730 AATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     123668 4 -    457564 AATT
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I
e manLeu1.NW_012099233v1      75505 121 +    290775 I
e chlSab2.chr17            28899974 115 -  71996105 I
e cerAty1.NW_012002711v1     441768 115 +    766320 I
e macNem1.NW_012011356v1    2689789 115 -   2996164 I
e macFas5.chr4             29646339 115 - 170955103 I
e rheMac8.chr4             29982375 115 + 172585720 I

a score=37485.000000
s hg38.chr6_GL000254v2_alt   807933 6 +   4827813 ACTCCA
s panTro5.chr6             29771073 6 + 175400573 ACTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30005688 6 + 173848474 ACTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5809133 6 +   6154872 ACTCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74508573 6 + 122973662 ACTCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29982490 6 + 172585720 ACTCTA
i rheMac8.chr4             I 115 C 0
s macFas5.chr4             29646454 6 - 170955103 actcta
i macFas5.chr4             I 115 C 0
s macNem1.NW_012011356v1    2689904 6 -   2996164 actcta
i macNem1.NW_012011356v1   I 115 C 0
s cerAty1.NW_012002711v1     441883 6 +    766320 ACTCTA
i cerAty1.NW_012002711v1   I 115 C 0
s chlSab2.chr17            28900089 6 -  71996105 actcta
i chlSab2.chr17            I 115 C 0
s saiBol1.JH378357            78654 6 -    242197 ACTCCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1       5645 6 -   1771730 ACTCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     123672 6 -    457564 ACTTCA
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I
e manLeu1.NW_012099233v1      75505 121 +    290775 I

a score=1670129.000000
s hg38.chr6_GL000254v2_alt   807939 233 +   4827813 TCCTGAACAATAACTTCC------CTCAAAAAAGAAGGATCTTTAAGACAAGTTGTCACCTGCCTCCCTGTGTGAATCTCCTAGAATGACATCCAGCCCAGCCCAGCCCATCTGAGACAGGCAGGAGAGGGAACTCTGGTGGGCATTTTGTCAATAAACTTGAGCATGCCAGGAACTCAAATGTGCTCCTTTCATTTTGCTGTCAATTGAATTGCATTTTTTTTTTTTTGCAAAAGATG
s panTro5.chr6             29771079 230 + 175400573 TCCTGAACAATAACTTCC------CTCAAAAAAGAAGGATCTTTAAGACAAGTTGTCACCTGCCTCCCTGTGTGAATCTCCTAGAATGACATCCAGCCCAGCCCAGCCCATCTGAGACAGGCAGGAGAGGGAACTCTGGTGGGCATTTTGTCAATAAACTTGAGCATGCCAGGAACTCAAATGTGCTCCTTTCATTTTGCTGTCAATTGAATTGCA---TTTTTTTTTTGCAAAAGATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30005694 229 + 173848474 TCCTGAACAATAACTTCC------CTCAAAAAAGAAGGATCTTTAAGACAAGTTGTCACCTGCCTCCCTGTGTGAATCTCCTAGAATGACATCCAGCCCAGCCCAGCCCATCTGAGACAGGCAGGAGAGGGAACTCTGGTGGGCATTTTGTCAATAAACTTGAGCATGCCAGGAACTCAAATGTGCTCCTTTCATTTTGCTGTCAATTGAATTGCA----TTTTTTTTTGCAAAAGATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5809139 231 +   6154872 TCCTGAACAATAACTTCC------CTCAAAAAAGAAGGATCTTTAAGACAAGTTGTCACCTGCCTCCCTGTGTGAATCTCCTAGAATGACATCCAGCCCAGCCCAGCCCATCTGAGACAGGCAGGAGAGGGAACTCTGGTGGGCATTTTGTCAATAAACTTGAGCATGCCAGGAACTCAAATGTGCTCCTTTCATTTTGCTGTCAATTGAATTGCA--TTTTTTTTTTTGCAAAAGATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74508579 228 + 122973662 ATCTGAACAACAGCTTCC------CTCAAAAAAGAAGGATCTTTAAAACAAGCTGTCGCCTGCCTCCCTGTGTGAATCTGCTAAAATGACATCCAGCCCAGCCCAGCCCATCTGAGACAGGCAGGAGAGGGAACTCTGGTGGGCATTTTGTCAATAAGCTTGAGCGTGCCAGGAACTTGAATGTGCTCCTTTCATTTTGCTGTAAATTGAATTGCA-----TTTTTTTTGCAAAAGATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29982496 228 + 172585720 TCCTGAACAATAGC-TCC------CCCAAAAAAGAAGGATCTTTAAGACAAGTTGTCACCTGCCTCCCTGTGTGAATCTCCTAGAATGATATCCAGCCCAGCCCAGACCATCTGAGACAGGCAGGAGAGGGAACTCTGGTGGGCATTTTGTCAGTAAGCTTGAGCATGCCAGGAACTCAAATGTGCTCCTTTCATTTTGCTGTAAATTGAATTGCA----TTTTTTTTTGCAAAAGATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29646460 227 - 170955103 tcctgaacaatagc-tcc------cccaAAAAAGAAGGATCTTTAAGACAAGTTGTCACCTGCCTCTCTGTGTGAATCTCCTAGAATGATATCCAGCCCAGCCCAGACCATCTGAGACAGGCAGGAGAGGGAACTCTGGTGGGCATTTTGTCAGTAAGCTTGAGCATGCCAGGAACTCAAATGTGCTCCTTTCATTTTGCTGTAAATTGAATTGCA-----TTTTTTTTGCAAAAGATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2689910 227 -   2996164 tcctgaacaatagc-tcc------cccaAAAAAGCAGGATCTTTAAGACAAGTTGTCACCTGCCTCCCTGTGTGAATCTCCTAGAATGATATCCAGCCCAGCCCAGACCATCTGAGACAGGCAGGAGAGGGAACTCTGGTGGGCATTTTGTCAGTAAGCTTGAGCATGCCAGGAACTCAAATGTGCTCCTTTCATTTTGCTGTAAATTGAATTGCA-----TTTTTTTTGCAAAAGATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     441889 227 +    766320 TCCTGAACAATAGC-TCC------CCCAAAAAAGAAGGATCTTTAAGACAAGTTGTCACCTGCCTGCCTGTGTGAATCTCCTAGAGTGATATCCAGCCCAGCCCAGACCATCTGAGACAGGCAGGAGAGGGAACTCTGGTGGGCATTTTGTCAATAAGCTTGAGCATGCCAGGAACTCAAATGTGCTCCTTTCATTTTGCTGTAAATTGAATTGCA-----TTTTTTTTGCAAAAGATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28900095 227 -  71996105 tcctgaacaatagc-tcc------ccccAAAAAGAAGGATCTTTAAGACAAGTTGTCACCTGCCTCCCTGTGTGAATCTCCTAGAATGATATCCAGCCCAGCCCAGACCATCTGAGACAGGCAGGAGAGGGAACTCTGGTGGGCATTTTGTCAATAAGCTTGAGCATGCCAGGAACTCAAATGTGCTCCTTTCATTTTGCTGTAAATTGAATTGCA-----TTTTTTTTGCAAAAGATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      75626 227 +    290775 TCCTGAACAATAGC-TCC------CCCAAAACAGAAGGATCTTTAAGACAAGTTGTCACCTGCCTGCCTGTGTGAATCTCCTAGAGTGATATCCAGCCCAGCCCAGACCATCTGAGACAGGCAGGAGAGGGAACTCTGGTGGGCATTTTGTCAATAAGTTTGAGCATGCCAGGAACTCAAATGTGCTCCTTTCATTTTGCTGTAAATTGAATTGCA-----TTTTTTTTGCAAAAGATG
i manLeu1.NW_012099233v1   I 121 C 0
s saiBol1.JH378357            78660 233 -    242197 TTCTGAACAATAGC-TCCGCCACTCCAAAAACAGGACGATCTTTCAAAGAAGTTGTCAGCTGCCTCCCTGTGTGAATCTCCTACACTGACATGCAGTGTAGCCCAGCCCATCTGAGAAAGGCAGAAGAGGGAACTCTGGTGGACATTTTGTCAGTAAGTTTGAACATGCCAGGAACTTGAATGTGCTCCTTTCATTTTGCTGGGAACTGAATTGCA-----TTTTATTTGCAAAAGATA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1       5651 230 -   1771730 TCCTGAACAATAGC-TCCCCC---CCAAAAAAAGGAGGATCTTTCAAAGAAGTTATCAGCTGCCTCCCTGTGTGAATATCCTACACTGACATGCAGTGTAGCCCAGCCCATCTGAGATGGGCAGAAGAGGGAATTCTGGTGGGCATTTTGTCAATAAGCTTGAACATGCCAGGAACTTCAATGTGCTCCTTTCATTTTGCTGTAAACTGAATTGCA-----TTTTATTTGCAAAAGATA
i cebCap1.NW_016107755v1   C 0 I 13
s aotNan1.NW_018509740v1     123678 228 -    457564 TCCTGAAAAATATC-TCCCC----CCTAAAAAAGAAGGATCTTTCAGAGAAGTTGTCAGCTGCCTCCCTGTGTGTATCTCCTACACTGACATGCAGTGTAGCCCAGCCTATCTGAGACAGGCAGAAGAGGGAACTCTGGTGGGCATTTTGTCAATAAGCTTGAGCATGCCAGGAACTTAAATGTACTCCTTTCA-TTTGCTGTGAACTGAATTGCA-----TTTTATTTGCAAAAGATA
i aotNan1.NW_018509740v1   C 0 I 13
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I

a score=29953.000000
s hg38.chr6_GL000254v2_alt   808172  7 +   4827813 ---TGGAAGT---
s panTro5.chr6             29771309  7 + 175400573 ---TGGAAGT---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30005923  7 + 173848474 ---TGGAAGT---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5809370  7 +   6154872 ---TGGAAGT---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74508807  7 + 122973662 ---TGGAAGT---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29982724  7 + 172585720 ---TGGAAGT---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29646687  7 - 170955103 ---TGGAAGT---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2690137  7 -   2996164 ---TGGAAGT---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     442116  7 +    766320 ---TGGAAGT---
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28900322  7 -  71996105 ---TGGAAGT---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      75853  7 +    290775 ---TGGAAGT---
i manLeu1.NW_012099233v1   C 0 C 0
s saiBol1.JH378357            78893 13 -    242197 TTATTACAATCAA
i saiBol1.JH378357         C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     123906 13 -    457564 I
e cebCap1.NW_016107755v1       5881 13 -   1771730 I
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I

a score=8470433.000000
s hg38.chr6_GL000254v2_alt   808179 1178 +   4827813 TCTTGTAAATCTGTGTCAGAAACTTACATTGGATTCACCAAGCCTAGGGAGATTTGGCTGTGCTTTGTTGGAGCCAATA-TTTTTCACCCTGGTTTACCCCACCACTGACTTGCttt----c------------tttttttttt---ttttgagacggagtttcactcttgttgcctaggctgcagtgcaatggtgcaatctcggctcgctgcaacctcagcctcctgggttcaaacgattctcctgcctcagcctcctgagtagctgggat--tacaggcatgcaccacaacacctggctaattttgtgtttttaatagagacagggtttctccatgttggtcagaccggtctcaaactcccaacctcaggtgatccgcccaccttggcctcccaaagtgctgggattacaggggtgagccactgtacccggccTTGACTTGCTTTTATGAGGCAAGAAAAGACATGTCTCCTTGTTGCACTAATTTCGATCAATCAATAAGTCAATTAGTTCATTTTCATTACATCTCTCTGAATCAATTGAGAGATAAATTGAG----AAGTCAAAACAATGCCCAACAACATAGCATCTTTATTCCTCCCTCCCCTAATGACCTGGGAAGCAGTTTGTGACCCCAAAGCACTTGCTTATATGTTATTCTCTCCAGGAATTGAATTTACTCCTCAAAGTAATAGGCACAGGCACCcatggtcaacacctgtctcctgaagcttatcacttaatggagggaacccaggagtatgattcctccatgcagacagtcagattccaaggagaaaggaggaaaagtccttcaaatgccacattcagccccttcttctggatgccccactcagcaaagtcactTGTGGCTGATGCTGGTCAGAGAAGCCCTTCCAAATGGGAACATGGGTGTAGGAAATATGTGCTTCTCACACTCCCAAAGGATCACAAATGGGGCCCTGTGTCTCTTAACTTCCTTATGTACAAAAGTACATACTCACTAGAATATGATTTTAC-AACATTTCCATCATTCC-Tatacaatgtgttgggaagtgatcctttctgatctatattttggaagagtttgtatagaattgtattatttttttctttaaatgtttggtagaattcaccagtagagacatctgggcctgggccttttt-tgtgggaagatatgcaatgacagttttaatgtcttt
s panTro5.chr6             29771316 1174 + 175400573 TCTTGTAAATCTGTGTCAGAAATTTACATTGGATTCACCAAGCCTAGGGAGATTTGGCTGTGCTTTGTTGGAGCCAATA-TTTTTCACCCTGGTTTACCCCACCACTGACTTGCttt----c----------------tttttt---ttttgagacggagtttcactcttgttgcccaggctgcagtgcaatggtgcaatctcggctcgctgcaacctcagcctcctgggttcaaacgattctcctgcctcagcctcctgagtagctgggat--tacaggcatgcaccacaacacctggctaattttgtatttttaatagagacagggtttctccatgttggtcagaccggtctcaaactcccaacctcaggtgatccgcccaccttggcctcccaaagtgctgggattacaggggtgagccaccgtacccggccTTGACTTGCTTTTATGAGGCAAGAAAGGACATGTCTCCTTCTTGCACTAATTTCGATCAATCAATAAGTCAATTAGTTCATTTTCATTACATCTCTCTGAATCACCTGAGAGATAAATTGAG----AAGTCAAAACAATGCCCAACAACATAGCATCTTTATTCCTCCCTCCCCTAATGACCTGGGAAGCAGTTTGTGACCCCAAAGCACTTGCTTATATGTTATTCTCTCCAGGAATTGAATTTACTCCTCAAAGTAATAGGCACAGGCACCcatggtcaacacctgtctcctgaagcttatcacttaatggagggaacccaggagtatgattcctccatgcagacagtcagattccaaggagaaaggaggaaaaggccttcaaatgccacattcagccccttcttctggatgccccactcagcaaagtcactTGTGGCTGATGCTGGTCAGAGAAGCCCTTCCAAATGGGAACATGGGTGTAGGAAATATGTGCTTCTCACACTCCCAAAGGATCACAAATGGGGCCCTGTGTCTCTTAACTTCCTTATGTATAAAAGTACATACTCACTAGAATATGATTTTAC-AACATTTCCATCATTCC-Tatacaatgtgttgggaagtgatcctttctgatctatattttggaagagtttgtatagaattgtattatttttttctttaaatgtttggtagaattcaccagtggagacatctgggcctgggccttttt-tgtgggaagatatgcaatgacagttttaatgtcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30005930 1174 + 173848474 TCTTGTAAATCTGTGTCAGAAACTTACATTGGATTCACCAAGCCTAGGGAGATTTGGCTGTGCTTTGTTGGTGCCAATA-TTTTTCACCCTGGTTTACCCCACCACTGACTTGCttt----c----------------tttttt---ttttgagacggagtttcactcttgttgcccaggctgcagtgcaatggtgcaatctcggctcgctgcaacctcagcctcctgggttcaaacgattctcctgcctcagcctcctgagtagctgggat--tataggcatgcaccacaacacctggctaattttgtatttttaatagagacagggtttctccatgttggtcagaccggtctcaaactcccaacctcaggtgatccgcccaccttggcctcccaaagtgctgggattacaggggtgagccaccgtacccggccTTGACTTGCTTTTATGAGGCAAGAAAGGACATGTCTCCTTCTTGCACTAATTTCGATCAATCAATAAGTCAATTAGTTCATTTTCATTACATCTCTCTGAATCACCTGAGAGATAAATTGAG----AAGTCAAAACAATGCCCAACAACATAGCATCTTTATTCCTCCCTCCCCTAATGACCTGGGAAGCAGTTTGTGACCCCAAAGCACTTGCTTATATGTTATTCTCTCCAGGAATTGAATTTACTCCTCAAAGTAATAGGCACAGGCACCcatggtcaacacctgtctcctgaagcttatcacttaatggagggaacccaggagtatgattcctccatgcagacagtcagattccaaggagaaaggaggaaaaggccttcaaatgccacattcagccccttcttctgtatgccccactcagcaaagtcactTGTGGCTGATGCTGGTCAGAGAAGCCCTTCCAAATGGGAACATGGGTGTAGGAAATATGTGCTTCTCACACTCCCAAAGGATCACAAATGGGGCCCTGTGTCTCTTAACTTCCTTATGTATAAAAGTACATACTCACTAGAATATGATTTTAC-AACATTTCCATCATTCC-Tatacaatgtgttgggaagtgatcctttctgatctatattttggaagagtttgtatagaattgtattatttttttctttaaatgtttggtagaattcaccagtggagacatctgggcctgggccttttt-tgtgggaagatatgcaatgacagttttaatgtcttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5809377 1174 +   6154872 TCTTGTAAATCTGTGTCAGAAACTTACATTGGATTCACCAAGCCTAGGGAGATTTGGCTGTGCTTTGTTGGAGCCAATA-TTTTTCGCCCTGGTTTACCCCACCACTGACTTGCttt----c----------------tttttt---atttgagacggagtttcactcttgttgcccaggctgcagtgcaatggtgcaatctcagctcgctgcaacctcagcctcctgggttcaaatgattctcctgcctcagcctcctgagtagctgggat--tacaggcatgcaccacaacacctggctaattttgtatttttaatagagacagggtttctccatgttggtcagaccggtctcgaactcccaacctcaggtgatccgcccaccttggcctcccaaagtgctgggattacaggggtgagccaccgaacccggccTTGACTTGCTTTTATGAGGCAAGAAAAGACATGTCTCCTTGTTGCACTAATTTCGATCAATCAATAAGTCAATTAGTTCATTTTCATTACATCTCTCTGAATCAACTGAGAGATAAATTGAG----AAGTCAAAACAATGCCCAACAACATAGCATCTTTATTCCCCCCTTCCCTAATGACCTGGGAAGCAGTTTGTGACCCCAAAGCACTTGCTTATATGTTATTCTCTCCAGGAATTGAATTTACTCCTCAAAGTAATAGGCACAGGCACCcatggtcaacatctgtctcctgaagcttatcacttaatggagggaacccaggagtatgattcctccatgcagacagtcagattccaaggagaaaggaggaaaaggccttcaaatgccacattcagccccttcttctggatgccccactcagcaaagtcactTGTGGCTGATGCTGGTCAGAGAAGCCCTTCCAAATGGGAACATGGGTGTAGGAAATATGTGCTTCTCACACTCCCAAAGGATCACAAATGGGGCCCTGTGTCTCTTAACTTCCTTATGTATAAAAGTACATACTCACTAGAACATGATTTTAC-AACATTTCCATCATTCC-TATGCaatgtgttgggaagtgatcctttctgatctatattttggaagagtttgtatagaattgtattatttttttctttaaatgtttggtagaattcaccagtggagacatctgggcctgggccttttc-tgtgggaagatatgcaatgacagttttaatgtcttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74508814 1175 + 122973662 TCTTGTAAATCTATCTCAGAAACTTACACTGGATTCACCAAGCCTAGGGAGATTTGGCTGTGCTTTGTTGGAGTCAACA-TTTTTCGCCCTGGTTCACCCCACCACTGACTTGCttt----t---------------ttttttt---ttttaagatggagtttcactcttgttgcccaggctgcagtgcagtggtgcaatctcggctcgcagcaacctcagcctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgggat--tacagacacgcaccacgacacctggctaattttgtatttttaatagagacagggtttctccatgttggtcaggctggtctcgaactcccaacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggggtgagccagcgtacccggccTTGACTTGCTTTTATGAGGCAAGAAAAGACATGCCTCCTTGTTCCACTAATTtcaatcaatcaataagtcaattaatTCATTTTCATTACATCTCTGTGAATCAACTGAGAGATAAATTGAG----AAGTCAAAACAATGCCCAACAACACAGCATCTTTATTCCTCCCTCCCCTAATGACCTGGGAAGCAGTTTGTGACCCCAAAGCACTTGCTTATATGTTATTCTCTCCAGTAATTGAATTTACTCCTCAAAATAATACACACAGGCACCcatggtcaacgcctgtctcctgaagcttatagcttaatggagagaacccaggagtatggttcctccatgcagacagtcagattccaaggagaaaggaggaaaaggccatcaaatgccacattcagccccttcttctggatgccctactcagcaaagtcactTGTGGCTGATGCTGGTCAGAGAAACCCTTCCAAATGGGAACATGGGTGTAGGAAATATGTGCTTCTCACACTCCCAAAGGATCACAAATGGGGCCCTGTGTCTCTTAACTTCCTTATGTATAAAAGTATATACTCACTAGAATATGATTTTAC-AACATGTCCGTCATTCC-TATGCaatgtgttgggaagtgatcctttctgatctatattttggaagagtttgtatagatttgtattatttttttctttaaatgtttggtagaattcaccagtggagacatctgggcctgggccttttt-tgtgggaagatatgcaatgacaattttaatgtcttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29982731 1174 + 172585720 TCTTGTAAATCTATCTCAGAACCTCACATTGGATTCGCCAAGCCTAGGGAGATTTGGCTGTGCTTTGTTGTAGCCAACATTTTTTTGCCCTGGTTTACCCCACCACTGACTTGCttt----tttgtttgtttgtttgtttttgt---ttttgagatggaatgtcactcttgttgcccaggctgcagtgcaatggcacaatctcggctcacagcaacctcagcctcctgggttcaagcgattctcctgcctcagcctcctaagaagatgggac--tatagtcatgggccacaacacccagctaattttgtatttttaatagagatggggtttcgccatgttggtcaggcaggtctcgaactcccaacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggagtgagccactgcacctggccTTGACTTGCCTTTATGAGGTGAGAAAAGACATGTCTCCTTGTTCCACTAATTtcaatcaatcaataagtcaattcattcattttcattacatCTCTCTGAATCAACTGAGAGATAAATTGAG----AAGTCAAAACAATTCCCAA-AACATTGTATCTTTATTCCTCCCTCCCCTAATGACCTGGGAAGCAGTTTGTGACCCCAAAGCACTTGCTTATATGTTATTCTCTCCAAGAATTGAATTTACTCCTCAAAATAATAGGCACAGGCACCCATGGTCAACA-------CCtaaagcttatcacttaatggagagaacccaggagtatgtctcctccatgcagacagtcaggttccaaggagaaaagaggaaaaggccttcaaatgccacattcagccccttcctctggatgccctactcagcaaagtcactTGTGGCTGATGCTGGTCAGAGAAACCCTTCCAAATGGGAACATGGGTGTAGGAAACGTGTGCTTCTCACACTCCC-------CACAGATGGGTCCCTGTGTCTCTTAACTTCCTTAAGTATAAAAGTACATACTCACTAGAATATGATTTTAC-AACATCTCCATCATccc-tatgcaatgtgttgggaagtgatcctttctgatctaaattttggaagagtttgtatagaattgtat--tttttttctttaaatgtttggtagaattcaccagtagagacatctgggcctgggccttttt-tgtgggaagatatgcaatgacaattttaatgtcttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29646694 1174 - 170955103 TCTTGTAAATCTATCTCAGAACCTCACACTGGATTCGCCAAGCCTAGGGAGATTTGGCTGTGCTTTGTTGTAGCCAACATTTTTTTGCCCTGGTTTACCCCACCACTGACTTGCttt----tttgtttgtttgtttgtttttgt---ttttgagatggaatgtcactcttgttgcccaggctgcagtgcaatggcacaatctcggctcacagcaacctcagcctcctgggttcaagcgattctcctgcctcagcctcctaagaagatgggac--tatagtcatgggccacaacacccagctaattttgtatttttaatagagatggggtttcgccatgttggtcaggcaggtctcgaactcccaacctcagttgatccacccgcctcggcctcccaaagtgctgggattacaggagtgagccactgcacctggccTTGACTTGCCTTTATGAGGTGAGAAAAGACATGTCTCCTTGTTCCACTAATttcaatcaatcaataagtcaattcattcattttcattacatCTCTCTGAATCAACTGAGAGATAAATTGAG----AAGTCAAAACAATTCCCAA-AACATTGTATCTTTATTCCTCCCTCCCCTAATGACCTGGGAAGCAGTTTGTGACCCCAAAGCACTTGCTTATATGTTATTCTCTCCAAGAATTGAATTTACTCCTCAAAATAATAGGCACAGGCACCCATGGTCAACA-------CCTGAAGCTTATCACTTAatggagagaacccaggagtatgtctcctccatgcagacagtcaggttccaaagagaaaagaggaaaaggccttcaaatgccacattcagccccttcctctggatgccctactcagcaaagtcactTGTGGCTGATGCTGGTCAGAGAAACCCTTCCAAATGGGAACATGGGTGTAGGAAACGTGTGCTTCTCACACTCCC-------CACAGATGGGGCCCTGTGTCTCTTAACTTCCTTAAGTATAAAAGTACATACTCACTAGAATATGATTTTAC-AACATCTCCATCATccc-tatgcaatgtgttgggaagtgatcctttctgatctaaattttggaagagtttgtatagaattgtat--tttttttctttaaatgtttggtagaattcaccagtagagacatctgggcctgggccttttt-tgtgggaagatatgcaatgacaattttaatgtcttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2690144 1177 -   2996164 TCTTGTAAATCTATCTCAGAACCTCACACTGGATTCGCCAAGCCTAGGGAGATTTGGCTGTGCTTTGTTGTAGCCAACA-TTTTTTGCCCTGGTTTACCCCACCACTGACTTGCTTTTTTGtttgtttgtttgtttgtttttgt---ttttgagatggaatgtcactcttgttgcccaggctgcagtgcaatggcacaatctcggctcacagcaacctcagcctcctgggttcaagcgattctcctgcctcagcctcctaagaagatgggac--tatagtcatgggccacaacacccagctaattttgtatttttaatagagacggggtttcgccatgttggtcaggcaggtctcgaactcccaacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggagtgagccactgcacctggccTTGACTTGCCTTTATGAGGTGAGAAAAGACATGTCTCCTTGTTCCACTAATttcaatcaatcagtaagtcaattcattcattttcattacatCTCTCTGAATCAACTGAGAGATAAATTAAG----AAGTCAAAACAATTCCCAA-AACATTGTATCTTTATTCCTCCCTCCCCTAATGACCTGGGAAGCAGTTTGTGACCCCAAAGCACTTGCTTATATGTTATTCTCTCCAAGAATTGAATTTACTCCTCAAAATAATAGGCACAGGCACCCATGGTCAACA-------CCtaaagcttatcacttaatggagagaacccaggagtatgtctcctccatgcagacagtcaggttccaaggagaaaagaggaaaaggccttcaaatgccacattcagccccttcctctggatgccctactcagcaaagtcactTGTGGCTGATGCTGGTCAGAGAAACCCTTCCAAATGGGAACATGGGTGTAGGAAACGTGTGCTTCTCACACTCCC-------CACAGATGGGTCCCTGTGTCTCTTAACTTCCTTAAGTATAAAAGTACATACTCACTAGAATATGATTTTAC-AACATCTCCATCATccc-tatgcaatgtgttgggaagtgatcctttctgatctaaattttggaagagtttgtatagaattgtat--tttttttctttaaatgtttggtagaattcaccagtagagacatctgggcctgggccttttt-tgtgggaagatatgcaatgacaattttaatgtcttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     442123 1181 +    766320 TCTTGTAAATCTATCTCAGAACCTCACACTGGATTCGCCAAGCGTAGGGAGATTTGGCTGTGCTTTGTTGGAGCCAACATTTTTTTGCCCTGGTTTACCCCACCACTGACTTGCttt----tttgtttgtttgtttgtttttgt---ttttgagatggagtgtcactcttgttgcccaggctgcagtgcaatggcacaatctcggctcacagcaacctcagcctcctgggttcaagcgattctcctgcctcagcctcctaagaagatggaac--tatagtcatgggccacaacacccagctaattttgtatttttaatagagatggggtttcgccatgttggtcaggcgggtctcgaactcccaacctcaggtgatccacccacctcagcctcccaaagtgctgggattacaggagtgagccactgcgcctggccTTGACTTGCCTTTATGAGACGAGAAAAGACATGTCTCCTTGTTCCACTAATTtcaatcaatcaataagtcaattcattcattttcattacatCTCTCTGAATCAACTGAGAGATAAATTGAG----AAGTCAAAACAATGTCCAA-AACATTGTATCTTTATTCCTCCCTCCCCTAATGACCTGGGAAGCAGTTTGTGACCCCAAAGCACTTGCTTATATGTTATTCTCTCCAAGAATTGAATTTACTCCTCAAAATAATAGGCACAGGCACCCATGGTCAACACCTGTCTCCTGAAGCTTATCACTTAACGGAGAGAACCCAGGAGTATGTCTCCTCCATGCAGACAGTCAGGTTCCAAGGAGAAAAGAGGAAAAGGCCTTCAAATGCCACATTCAGCCCCTTCTTCTGGATGCCCTACTCAGCAAAGTCACTTGTAGCTGATGCTGGTCAGAGAAACCGTTCCAAATGGGAACATGGGTGTAGGAAATGTGTGCCTCTCACACTCCC-------CACAGATGGGGCCCTGTGTCTCTTAACTTCCTTAAGTATAAAAGTACATACTCACTAGAATATGATTTTAC-AACATCTCCATCATCGC-TATGCaatgtgttgggaagtgatcctttctgatctaaattttggaagagtttgtatagaattgtat--tttttttctttaaatgtttggtagaattcaccagtagagacatctgggcctgagccttttt-agtgggaagatatgcaatgacaattttaatgtcttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28900329 1181 -  71996105 TCTTGTAAATCTATCTCAGAACCTCACACTGGATTCGCCAAGCCTAGGGAGATTTGGCTGTGCTTTGTTGGAGCCAACATTTTTTTGCGCTGGTTTACCCCACCACTGACTTGCttt----tttgtttgtttgtttgtttttgt---ttttgagatggagtgtcactcttgttgcccaggctgcagtgcaatggcacaatctcggctcacagcaacctcagcctcctgggttcaagcgattctcctgcctcagcctcctaagaagatgggac--tatagtcatgggccacaacacccagctaattgtgtatttttaatagagatggggttacgccatgttggtcaggcgggtctcgaactcccaacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggagtgaaccactgcgcctggccTTGACTTGCCTTTATGAGGCGAGAAAAGACATGTCTCCTTGTTCCACTAATttcaatcaatcaataagtcaattcattcattttcattacatCTCTCTGAATCAACTGAGAGATAAATTGAG----AAGTCAAAACAATGCCCAA-AACATTGTATCTTTATTCCTCCCTCCCCTAATGACCTGGGAAGCAGTTTGTGACCCCAAAGCACTTGCTTATATGTTATTCTCTCCAAGAATTGAATTTACTCCTCAAAATAATAGGCACAGGCACCcatggtcaacacctgtctcctgaagcttatcacttaacggagagaacccaggagtatgtctcctccatgcagacagtcaggttccaaggagaaaagaggaaaaggccttcaaatgccacattcagccccttcttctggatgccctactcagcaaagtcactTGTGGCTGATGCTGGTCAGAGAAACCCTTCCAAATGGGAACATGGGTGTAGGAAACTTGTGCTTCTCACACTCCC-------CACAGATGGGGCCCTGTGTCTCTTAACTTCCTTAAGTATAAAAGTACATACTCACTAGAATATGATTTTAC-AACATCTCCATCATccc-tatgcaatgtgttgggaagtgatcctttctgatctaaattttggaagagtttgtatagaattgtat--tttttttctttaaatgtttggtagaattcaccagtagagacatctgggcctgggccttttt-tgtgggaagatatgcaatgacagttttaatgtcttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      75860 1181 +    290775 TCTTGTAAATCTATCTCAGAACCTCACACTGGATTCGCCAAGCCTAGGGAGATTTGGCTGTGCTTTGTTGGAGCCAACTTTTTTTTGCCCTGGTTTACCCCACCACTGACTTGCttt----tttgtttgtttgtttgtttttgt---ttttgagatggagtgtcactcttgttgcccaggctgcagtgcaatggcacaatctcggctcacagcaacctcagcctcctgggttcaagcgattctcctgcctcagcctcctaagaagatgggactatatagtcatgggccacgacacccagctaattttgtatttttaatagagatggggtttcgccatgttggtcaggcggatctcgaactcccaacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggagtgagccactgcgcttggccTTGACTTGCCTTTATGAGGCGAGAAAAGACATGTCTCCTTGTTCCACTAATTtcaatcaatcaataagtcaattcattcattttcattacatCTCTCTGAATCAACT--GAGATAAATTGAG----AAGTCAAAACAATGCCCAA-AACATTGTATCTTTATTCCTCCCTCCCCTAATGACCTGGGAAGCAGTTTGTGACCCCAAAGCACTTGCTTATATGTTATTCTCTCCAAGAATTGAATTTACTCCTCAAAATAATAGGCACAGGCACCcatggtcaacacctgtctcctgaagcttatcacttaacggagagaacccaggagtatgtctcctccatgcagacagtcaggttccaaggagaaaagaggaaaaggccttcaaatgccatattcagccccttcttctggatgccctactcagcaaagtcactTGTGGCTGATGCTGGTCAGAGAAACCCTTCCAAATGGGAACATGGGCGTAGGAAATGTGTGCTTCTCACACTCCC-------CACAGATGGGGCCCTGTGTCTCTTAACTTCCTTAAGTATAAAAGTACATACTCACTAGAATATGATTTTAC-AACATCTCCATCATccc-tatgcaatgtgttgggaagtgatcctttctgatctaaattttggaagagtttgtatagaattgtat--tttttttctttaaatgtttggtagaattcaccagtggagacatctgggcctgggccttttt-tgtgggaagatatgcaatgacaattttaatgccttt
i manLeu1.NW_012099233v1   C 0 C 0
s saiBol1.JH378357            78906 1175 -    242197 TCTTGTAAATCTGTCTCAGAATCTTCAACTGGATT---CAAGCCTAGGGAGAATTGGTTGTGCTTTGATGGAACTGGCA-TTATATGCCCTGGTTTACCCAACCACCAACTTGCttt----t----------tttttttttcct-------gagacagagtttccctcttgttgcccaggctggagtgcaatggcatgatcttggctcaccacaacctccacctcctgagttaaagcaattctactgcctgagcctcccaagtagctgagat--tacaggcatgcaccaccacgtctagctaattttatatttttagtagagatgcagtttctctatgttggtcaggctggtctcaaacttctgacctcaggtgatctgcctgccttggtttcccaaagtgttgggattgcaggtatgagccaccacgcctgacTTTGGCTTGCTTTTATGAGGCAAGAAAAGACATACTTTCTT-TTCCATTGATTTCAATAAATAAGTCAATCAATTAAAACATTTTGATTACATCTCTCTGAATCAACTGAGAGACAAATTGAGAATTAAGTAAAAACAATGCCCAATAACATACTATCTTTATTACTCCCTTCCATAATGACCTGGGAAGCAGTTTGTGACCCCAGAGCACTAGCTTATATATTATTCTCCCCAACAATTGAATTTATTCCTCAAAATAATAGGCACAGGCA-Ccatggtcaagacctgtctcctgaagcttatcacttagtggagcgaacccatgagtatgtttcctccatgcagacagtcagattccagagagaaaggaggaaaaagccttcaaatgccatgttcagcaccttcttctggat-tcctagtcaccaaagtcactTGTGGCTGATGCTGGTCAGAGAAGCCCTTCCAAATGGGATCAGGGGTATAGGAAATATGAGCTTCTCACACTCCTAAAGGATCAGAGATGGGGCCCTGTGTCTCTTACCTTCCTTAAGTAT-AAAGTACATACTCACTACGATCTGTTTTTAC-AACGTTTTCATCATTccttatgcaatgtgttgggaagtgatcctttctgatctatattttggaagagtatgtgtagaattgtattctttctttctttaaatttttggtagaattcatcagtagagacaactgggcctgggcctttttctgtgggaagatttgcaatgacaattttaatatcttt
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1       5894 1180 -   1771730 TCTTGTAAATCTGTCTCAGAATCTTCAACTGGATT---CAAGCCTAGGGATATTTGGTTGTGCTTTGTTGGAACTGGCA-TTATTCGCCCTGGTTTACCCCACCACTGACTTGCttt----t----------tttttttttctt---tttggaggtgaagtttccctcttgttgcccaggctggagagcaatggcatgatcttggctcaccataacctccacctcccaagttaaagcaattatactgcctcagcctcccaagtagctgggat--tacaggcatgcaccaccatgtctagctaattttacatttttagtagagatgcagtttccctatgttggtcaggctggcctcgaacttccaacctcaggtgatctgcctgccttggcctccaaaagtgttgggattgcaggtatgagccaccgctcctggccTTGGCTTGCTTTTATGAGGCAAGAAAAGACATATCTCCTT-TTCCACTAATTtcaatcaataagtcaatcaatcaatGCATTTTGATTACATCTCTATGAATCAGCTGAGAGATAAATTGAGAATCAAGCCAAAACAATGCCCAATAACATAGTATC-TTATTACTCCCTCCCATAATCACCTGGGAAGCAGTTTGTGACCCCAGAGCACTTGCTTATATATTATTCTCCGCAAGAATTGAATTTAATCCTCAAAATAAAAGGCACAGGCA-CcatggtcaagacctgtctcctgaagcttatcacctagtggagagagcccataagtatgtttactccatgcagacagtcagattccagaaagaaaggagaaaaagcccttcaaatgccatgttaaaccccttcttctagatgccctagtcagcaaagtcacttctGGCTGATGCTGCTCAGAGAAGCCCTTCCAAATGGGAATATGGGTATAGGAAATACGAGCTTCTCACACTCCTAAAGGATCACAGATGGGGACTTCTGTCTCTTACCTTCCATAAGTATAAAAGTACATACTCACTACAATCTGATTTTAC-AACATTTTCATCATTCCATACACaatgtgttgggaactgatcctttctgatctatattttgcaagagtatgtgtagaattgtattctttcttcctttaaatttttgctagaattcaccagtggagacatctgggcctgggcctttttctgtgggaagatttgcaatgacaattttaatgtcttt
i cebCap1.NW_016107755v1   I 13 N 0
s aotNan1.NW_018509740v1     123919 1187 -    457564 TCTTATAAGTCTGTCTCAGAATCTTCTACTGGATTCACCAAGTGTAGGGAGATTTGGCTGTGCTTTGTTGGAACTGATA-TTATTCGCCCTGGTTTACCCCACCACCTACTTGCttt----t----------ttttttttttttttttttttagatggagtttctctcttgttgtccaggctggagtgcaatggcatgatcttggctcaccacaacctctgcctcccgggttcaagtgattctactgcctcagcctcccaagtagctgggat--tacaggcatgcaccaccacatctggctaattttatatttttagtagagatggagtttctttatgttggccaggctggtctcaaactcccaacctcaggtgttccgcctgccttggcctcccaaaatgttgggattgcaggcatgagccactgcgcctggACTTGGCTTGCTTTTTTGAGGAAAGAAAAGACATGTCTCATT-ATCCACTGATTtcaatcaataagtcaatcaattaatGCATTTTGATTACATCTCTCTGAATCAACTGAGAGATAAATTGAGAATTAAGTCAAAAGAATGCCCAATAACATAATATCTTTATTACTCCCTCCCACAATGACCTGGGAAGCAGTTTGTGAACTCAGAGCACTCACTTATATATTATTCTCCCAAAGAATTGAATTTATTCCTCAAAATAGTAGGCACAGGCA-CCATGGTCAAGACCTGTCTCCTGAAGCTTATCACTTAGTGGAGAGAATCCATGAGTATGTCTCCTCCATGCAGACAGTCAGATTCTACAGAGCAAGGAGGAAAAGGCCTTCAAATGCCATGTTCAGCCCCTTCTTCTGGATGCCCTACTCAGCAAAGTCATTTGTGGCTGATGCTGGTCAGAGAAGCCCTTCCAAATGGGAACATGGGTACAGGAAATATGTGCTTCTCACACTCCCAAAGGGTCACAGATGGGGCCCTGTGTCTCTTGCCTTCCTTAAGTATAAAAGTACATTCTCACTATGATCTGATTGTACAAACATTTTCATCATTctttatgcaatgtgttgggaagtgatcctttctgatctatg-tttggaagagtttgtgtagaattttattctttctttctttaaatgtttggtagaattcaccagtggagacatctgggcctgggcctttttctgtgggaagatttgcaatgaaaattttaatgtcttt
i aotNan1.NW_018509740v1   I 13 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I

a score=65924.000000
s hg38.chr6_GL000254v2_alt   809357 10 +   4827813 acttcttgta
s panTro5.chr6             29772490 10 + 175400573 acttcttgta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30007104 10 + 173848474 acttcttgta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5810551 10 +   6154872 acttcttgta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74509989 10 + 122973662 acttcttata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29983905 10 + 172585720 acttcttgta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29647868 10 - 170955103 acttcttgta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2691321 10 -   2996164 acttcttgta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     443304 10 +    766320 atttcttgta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28901510 10 -  71996105 acttcttgta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      77041 10 +    290775 acttcttgta
i manLeu1.NW_012099233v1   C 0 C 0
s saiBol1.JH378357            80081 10 -    242197 acttttttta
i saiBol1.JH378357         C 0 I 66179
s aotNan1.NW_018509740v1     125106 10 -    457564 acttcttgta
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I

a score=7126029.000000
s hg38.chr6_GL000254v2_alt   809367 1324 +   4827813 ggcttatacagattttctatttcctcttgagtcaattttggtaattagtttttctagaaatttatccatttcatcgaaggtgtctagcatgttaggataaagttgttcataggatttctttataatcctttaaatttctataaagttggtaatgatgtgcccaatttcatttctgattttaggaatttgaggccattt-----ttttttcttggtaagtctagctaaaggtttgtcaattgtgttgttattttccatgattcaacttttggtttcattacttttctctatagtgttttattttctattccatctactcttgctctcttctttattatttcctttcttctgcttgctttggggttagttttctcttcttttccttgcttct--taccatagaaagttgaattactgattagaggtatttttcttttccaatgtaggcatttacagctacagattttcctctaagcactggtttatctccatctcataaatgttgacatgttatggtttcatttc-atttcatgcat-attctttttaatttcccctgtgtttttttttctttcacttgttatttgtggattcctgaagtttccaactgttggtgattactcattcaattccattgtggttggaatacatatattgtattagttcaa-tttttttttaatttatagataa----tttgtgccctcccatctagtctatcctggagaatgttccatgtgtgtttcaaaagcgtg--tataattcatttgttgttgtcaagtaggtcaagttggttgataatgtttcaggctctgtatcctt------------gctgattttctatctagttgttccatcaatgattgataatggagtgttgaaatcttcaactatttttaatgatttgtttatttatcccctcaattctgtcattttcatgttttatgtatttgggggatgtgttgctaattgtgtgtatgtttataatcctcatatcctcctgataaattgaaa--ttttatcattatagaatatgcctctttatttctagtaacgctatttttctcaaggtctactttgtccaatattagtagagctgtctcagctctttcatcatagttttctacatggtatacttttttccaccctct-----------------------ttttttaacctattca-ttttaaaatcaaaactgcctctggtagactgcatataccagacattggacatactaggtgaacatattagacgaacaattttaaacacgttc------------------------aaagaactaaaggaaaccatgtcaaaagaactaaaggaatgcatgagaatgatatctcaccaaatacaaaacatcaataatgagatggaatgttaa
s panTro5.chr6             29772500 1324 + 175400573 ggcttatacagattttctatttcctcttgagtcaattttggtaattagtttttctagaaatttatccatttcatcgaaggtgtctagtatgttaggataaagttgttcataggatttctttataatcctttaaatttctataaagttggtaatgatgtgcccaatttcatttctgattttaggaatttgaggccattt-----ttttttcttggtaagtctagctaaaggtttgtcaattgtgttgttattttccatgattcaacttttggtttcattacttttctctatagtgttttattttctattccatctactcttgctctcttctttattatttcctttcttctgcttgctttggggttagttttctcttcttttccttgcttct--taccatagaaagttgaattactgattagagatatttttcttttccaatgtaggcatttacagctacagattttcctctaagcattggtttatctccatctcataaatgttgacatgttatggtttcatttc-atttcatgcataattctttttaatttcccctgtg-ttttttttctttcacttgttatttgtggattcctgaagtttccaacttttggtgattactcattcaattccattgtggttggaatacatatattgtattagttcaa-tttttttttaatttatagataa----tttgtgccctcccatctagtctatcctggagaatgttccatgtgtgtttcaaaagcgtg--tataattcatttgttgttgtcaagtaggtcaagttggttgataatgtttcagcctctgtatcctt------------gctgattttctatctagttgttccatcaatgattgataatggagtgttgaaatcttcaactatttttaatgatttgtttatttatcccttcaattctgtcattttcatgttttatgtatttgggggatgtgttgctaattgtgtgtatgtttataatcctcatatcctcctgataaattgaaa--ttttatcattatagaatatgcctctttatttctagtaacgctatttttctcaaggtctactttgtccaatattagtagagctgtctcagctctttcatcatagttttctacatggtatacttttttccaccctct-----------------------ttttttaacctattca-ttttaaaatcaaaactgcctcttgtagactgcatataccagacattggacatactaggtgaacatattagatgaacaattttaaacacgttc------------------------aaagaactaaaggaaaccatgtcaaaagaactaaaggaatgcatgagaatgatatctcaccaaatacaaaacatcaataatgagatggaatgttaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30007114 1323 + 173848474 ggcttatacagattttctatttcctcttgagtcaattttggtaattagtttttctagaaatttatccatttcatcgaaggtgtctagtatgttaggataaagttgttcataggatttctttataatcctttaaatttctataaagttggtaatgatgtgcccaatttcatttctgattttaggaatttgaggccattt-----ttctttcttggtaagtctagctaaaggtttgtcaattgtgttgttattttccatgattcaacttttggtttcattacttttctctatagtgttttattttctattccatctactcttgctctcttctttattatttcctttcttctgcttgctttggggttagttttctcttcttttccttgcttct--taccatagaaagttgaattactgattagagatatttttcttttccaatgtaggcatttacagctacagattttcctctaagcattggtttatctccatctcataaatgttgacatgttatggtttcatttc-atttcatgcataattctttttaatttcccctgtg-ttttttttctttcacttgttatttgtggattcctgaagtttccaacttttggtgattactcattcaattccattgtggttggaatacatatattgtattagttcaa--ttttttttaatttatagataa----tttgtgccctcccatctagtctatcctggagaatgttccatgtgtgtttcaaaagcgtg--tataattcatttgttgttgtcaagtaggtcaagttggttgataatgtttcagcctctgtatcctt------------gctgattttctatctagttgttccatcaatgattgataatggagtgttgaaatcttcaactatttttaatgatttgtttatttatcccttcaattctgtcattttcatgttttatgtatttgggggatgtgttgctaattgtgtgtatgtttataatcctcatatcctcctgataaattgaaa--ttttatcattatagaatatgcctctttatttctagtaacgctatttttctcaaggtctactttgtccaatattagtagagctgtctcagctctttcatcatagttttctacatggtatacttttttccaccctct-----------------------ttttttaacctattca-ttttaaaatcaaaactgcctcttgtagactgcatataccagacattggacatactaggtgaacatattagatgaacaattttaaacatgttc------------------------aaagaactaaaggaaaccatgtcaaaagaactaaaggaatgcatgagaatgatatctcaccaaatacaaaacatcaataatgagatggaatgttaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5810561 1324 +   6154872 ggcttatacagattttctatttcctcttgagtcaattttggtaattagtttttctagaaatttatccatttcatcgaaggtgtctaatatgttaggataaagttgttcataggatttctttataatcctttaaatttctataaagttggtagtgatgtgcccaatttcatttctgattttaggagtttgaggcaattt-----ttttttcttggtaagtctagctaaaggtttgtcaattgtgttgttattttccatgattcaacttttggtttcattacttttctctatagtgttttattttctattccatctactcttgctctcttctttattatttcctttcttctgcttgctttggggttagttttctcttcttttccttgcttct--taccatagaaagttgaattactgattagaggtatttttcttttccaatgtaggcatttacagctacagattttcctctaagcactggtttatctccatctcataaatgttgacatgttatggtttcatttc-atttcatgcataattctttttaatttcccctgtg-ttttttttctttcacctgttatttgtggattcctgaagtttccaactgttggtgattactcattcaattccattgtggttggaatacatatattgtattagttcaattttttttttaatttatagataa----tttgtgccctcccatctagtctatcctggagaatgttccatgtatgtttcaaaagcatg--tataattcatttgttgttgtcaagtaggtcaagttggttgataatgtttcagcctctgtatcctt------------gctgattttctatctagttgttccatcaatgattgataatggagtgttgaaatcttcaactatttttaatgatttgtttatttatcccttcaattctgtcattttcatgttttatgtattt-ggggatgtgttgctaattgtgtgtatgtttataatcctcatatcctcctgataaattgaaa--ttttatcattatagaatatgcctctttatttctagtaatgctatttttctcaaggtctactttgtccaatattagtagagctgtctcagctctttcatcatagttttctacatggtatacttttttccaccctct-----------------------ttttttaacctattca-ttttaaaatcaaaactgcctcttgtagactgcatataccagacattggacatactaggtgaacatattagatgaacaattttaaacacgttc------------------------aaagaactaaaggaaaccatgtcaaaagaactaaaggaaagcatgagaatgatatctcaccaaatacaaaacatcaataatgagatggaatgttaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74509999 1321 + 122973662 ggcttatacagattttctatttcctcttgagtcaattttggtaattagtttttctagaaatttatgcatttcatcgaaggtgtctaatatgttagcataaagttgttcataggatttctttataatcctttaaatttctataaagttggtagtgatgtgcccaatttcatttctgattttaggaatttgaggccattt-----gtttttcttggcaagcctagctaaaggtttgtcaattgtgttgttattttccatgattcaacttttggtttcattacttttctctatagtgttttattttctattccatctactcttgctctcatttttattatttgctttcttctgcttgctttggggttagttttctcttcttttccttgcttct--taccatagaaagttgaattattgattagaggtatttttcttttccaatgtaggcatttacagctgcagattttcctctaagcactgctttatctccatctcataaatgttgacatgttatggtttcatttc-aattcatgcataattatttttaatttcccctgtg-ttttttttctttgacctgttatttgtggattcctgaagtttccaactgttggtgattactaattcaattccactgtggttggaatacatatattgtattagttcaa-tttttttttaatttatagataa----tttgtgccctcccatctagtctatcctggagaatgttccatgtgtgtttcaaaagcgtg--tataattcatttgttgttgtcaagtaggtcaagttggttgataatgtttcagcctctgtatcctt------------gctgattttctatctagttgttctatcaatgattgataatggagtgctgaaatcttcaactattattaatgatttg----tttatcctttcaattctgtcattttcatgttttatgtatttgggggatgtgttgctaattgtgtatatgtttataatccttatatcctcctgataaattgaaa--ttttatcattatagaatatgcctctttatttctagtaacgctatttttctcaaggtctactttgtccaatattagtagagctgtctcagctcttttatcatagttttctacatggtatacttttttccaccctct-----------------------ttttttaacctattcatttttaaaatctaagatgccttttgtagactgcatataccagacattggacatactaggtgaacatattagacgaacaattttaaacaagttc------------------------aaagaactaaaggaaaccacgtcaaaagaactaaaggaatgcatgagaatgatatgtcaccaaatacagaacatcaataatgagatggaatgttaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29983915 1299 + 172585720 ggcttattcagattttctatttcctcttgcatcaatttaggtaattagtttttctagaaatgtatccatttcatcaaaggtgtctaatatgttagcataaagttgtttg----------ttatagtcctttaaatttccataaagttggtagtgatatgcccaatttcatttctgaatttaggaaattgaggccattt------tttttcttggcaagcctagctaaaggtttatcaattgtgttgttattttccacaattcagcttttggtttctttatttttctctattgtgctttattttctgttccatctactcttgctctcatctttattatttccttccttctgcttgctttggggttagttttctcttcttttccttgcttct--taccatagaaagttgaattattgattagaggtatttttcttttccaaagtaggcatctacagctatagattttcctctaagcactgctttttcctcatctcataaatgttgacatgttatggtttcatttc-atttcatgcataattc--tctaatttaccctgtg--tttttttctttcacctgttacttgtggattcctgaagtttccaactgttggtgattactaattcaattccattgtggttggaatacatacattatattagttcaa-tttttttttaatttatagataa----tttgtgccctcccatctagtctatcctggagaatgttccatgtgtgtttcaaaagcatg--tataattcatttgttgtt---------gtcaagttggttgataatgtttcagtctctgtatcctt------------gctgattttctatctagttgttctatcaatggttgataatggaatgttgaaatcttcaactattattaatgatctgtttatttatcccttcaattctgtcattttcacattttatgtatttgggtgatg---tgttaattgtgtatatgtttataatccttatatcctcccgataaattgaaat-ttttatcattatagaatatgcctctttatttttagtaatgctatttttctcaaggtctactttgtccaacattagtagagctgtctcagctcttttatcatggttttctacatggtatactttcttccaccctc------------------------tttttcaacatattcatttttaaggtctaaagtgcctcttgcagattgcatataccaaacattggacatactaggtgaacatattagaaaaacaattttaaacacattc------------------------aaagagctaaaggaaaccttgtcaaaagaactaaaggaatgcatgagaatgatatctcaccaaatacagaacatcaataatgagatggaatgttaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29647878 1299 - 170955103 ggcttattcagattttctatttcctcttgcatcaatttaggtaattagtttttctagaaatgtatccatttcatcaaaggtgtctaatatgttagcataaagttgtttg----------ttatagtcctttaaatttccataaagttggtagtgatatgcccaatttcatttctgaatttaggaaattgaggccattt------tttttcttggcaagcctagctaaaggtttatcaattgtgttgttattttccacaattcagcttttggtttctttatttttctctattgtgctttattttctgttccatctactcttgctctcatctttattatttccttccttctgcttgctttggggttagttttctcttcttttccttgcttct--taccatagaaagttgaattattgataagaggtatttttcttttccaaagtaggcatctacagctatagattttcctctaagcactgctttttcctcatctcataaatgttgacatgttatggtttcatttc-atttcatgcataattc--tctaatttaccctgtg--tttttttctttcacctgttacttgtggattcctgaagtttccaactgttggtgattactaattcaattccattgtggttggaatacatacattatattagttcaa-tttttttttaatttatagataa----tttgtgccctcccatctagtctatcctggagaatgttccatgtgtgtttcaaaagcatg--tataattcatttgttgtt---------gtcaagttggttgataatgtttcagtctctgtatcctt------------gctgattttctatctagttgttctatcaatggttgataatggaatgttgaaatcttcaactattattaatgatttgtttatttatcccttcaattctgtcattttcacattttatgtatttgggggatg---tgttaattgtgtatatgtttataatccttatatcctcccgataaattgaaat-ttttatcattatagaatatgcctctttatttttagtaatgctatttttctcaaggtctactttgtccaacattagtagagctgtctcagctcttttatcatggttttctacatggtatactttcttccaccctc------------------------tttttcaacatattcatttttaagatctaaagtgcctcttgcagactgcatataccagacattggacatactaggtgaacatattagaaaaacaattttaaacacattc------------------------aaagagctaaaggaaaccttgtcaaaagaactaaaggaatgcatgagaatgatatctcaccaaatacagaacatcaataatgagatggaatgttaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2691331 1298 -   2996164 ggcttattcagattttctatttcctcttgcatcaatttaggtaattagtttttctagaaatgtatccatttcatcaaaggtgtctaatatgttagcataaagttgtttg----------ttatagtcctttaaatttccataaagttggtagtgatatgcccaatttcatttctgaatttaggaaattgaggccattt------tttttcttggcaagcctagctaaaggtttatcaattgtgttgttattttccacaattcagcttttggtttctttatttttctctattgtgctttattttctgttccatctactcttgctctcatctttattatttccttccttctgcttgctttggggttagttttctcttcttttccttgcttct--taccatagaaagttgaattattgattagaggtatttttcttttccaaagtaggcatctacagctatagattttcctctaagcactgctttttcctcatctcataaatgttgacatgttatggtttcatttc-atttcatgcataattc--tctaatttaccctgtg--tttttttctttcacctgttacttgtggattcctgaagtttccaactgttggtgattactaattcaattccattgtggttggaatacatacattatattagttcaa--ttttttttaatttatagataa----tttgtgccctcccatctagtctatcctggagaatgttccatgtgtgtttcaaaagcatg--tataattcatttgttgtt---------gtcaagttggttgataatgtttcagtctctgtatcctt------------gctgattttctatctagttgttctatcaatggttgataatggaatgttgaaatcttcaactattattaatgatctgtttatttatcccttcaattctgtcattttcacattttatgtatttgggtgatg---tgttaattgtgtatatgtttataatccttatatcctcccgataaattgaaat-ttttatcattatagaatatgcctctttatttttagtaatgctatttttctcaaggtctactttgtccaacattagtagagctgtctcagctctcttatcatggttttctacatggtatactttcttccaccctc------------------------tttttcaacatattcatttttaaggtctaaagtgcctcttgcagattgcatataccagacattggacatactaggtgaacatattagaaaaacaattttaaacacattc------------------------aaagagctaaaggaaaccttgtcaaaagaactaaaggaatgcatgagaatgatatctcaccaaatacagaacatcaataatgagatggaatgttaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     443314 1332 +    766320 ggcttattcagattttctatttcctcttgcgtcaatttaggtaattagtttttctagaaatgtatccatttcatcaaaggtgtctaatatgttagcataaagttgtttgtaggatttctttatagtcctttaaatttccataaagttggtagtgatgtgcccaatttcatttctgaatttaggaaattgaggccattt------tttttcttggcaagcctagctaaaggtttatcaattgtgttgttattttccacaattcagcttttggtttctttacttttctctattgtgctttattttctgttccatctactcttgctctcatctttattatttccttccttctgcttgctttggggttagttttctcttcttttccttgcttct--taccatagaaagttgaattattgattagaggtatttttcttttccaaagtaggcatctacagctatagattttcctctaagcactgctttttccccatctcataaatgttgacatgttatggtttcatttc-atttcatgcataattc--tctaatttaccctgtg--tttttttctttcacctgttatttgtggattcctgaagtttccaactgttggtgattactaattcaattccattgtggttggaatacatacattatattagttcaa--ttttttttaatttatagataa----tttgtgccctcccatctagtctatcctggagaatgttccatgtgtgtttcaaaagcatg--tataattcatttgttgtt---------gtcaagttggttgataatgtttcagtctctgtatcctt------------gctgattttctatctagttgttctatcaatggttgataatggaatgttgaaatcttcaactattattaatgatttgtttatttatcccttcaattctgtcattttcacattttatgtatttgggggatg---tgttaattgtgtatatgtttataatccttatatcctcccgataaattgaaat-ttttatcattatagaatatgcctctttatttttagtaatgctatttttctcaaggtctactttgtccaacattagtagagctgtctcagctcttttatcatggttttctacatggtatactttcttccaccctc------------------------tttttcaacatattcatttttaagatctaaagtgcctcttgcagactgcatataccagacattggacatactaggtgaacatattagaaaaacaattttaaacacattcaaagaactaaaggaaaccttgtcaaaagagctaaaggaaaccttgtcaaaagaactaaaggaatgcatgagaatgatatctcaccaaatacagaacatcaataatgaaatggaatgttaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28901520 1307 -  71996105 ggcttattcagattttctatttcctcttgtgtcaatttaggtaattagtttttctagaaatgtatccatttcatcaaaggcgtctaatatgttagcataaagttgtttgtaggatttctttatagtcctttaaatttccataaagttggtagtgatgtgcccaatttcatttctgaatttaggaaattgaggccattt------tttttcttggcaagcctagctaaaggtttatcaattgtgttgttattttccacaattcagcttttggtttctttacttttctctattgtgctttattttctgttccatctactcttgctctcatctttattatttccttccttctgcttgctttggggttagttttctcttcttttccttgcttct--taccatagaaagttgaattattgattagaggtatttttcttttccaaagtaggcatctacagctatagattttcctctaagcactgctttttccccatctcataaatgttgacatgttatggtttcatttc-atttcatgcataattc--tctaatttaccctgtg--tttttttctttcacctgttatttgtggattcctgaagtttccaactgttggtgattactaattcaattccattgtggttggaatacatacattatattagttcaa--tttttttaaatttatagataa----tttgtgccctcccatctagtctatcctggagaatgttccatgtgtgtttcaaaagcatg--tataattcatttgttgtt---------gtcaagttgattgataatgtttcagtctctgtatcctt------------gctgattttctatctagttgttctatcaatggttgataatggaatgttgaaatcttcaactattattaatgatttgtttatttatcccttcaattctgtcattttcacattttatgta-ttgggggttg---tgttaattgtgtatatgtttataatccttatatcctcccgataaattgaaat-ttttatcattatagaatatgcctctttatttttagtaatgctatttttctcaaggtctactttgtccaacattagtagagctgtctcagctcttttatcatggttttctacatggtatactttcttccaccttc------------------------tttttcaacatattcatttttaagatctaaagtgcctcttgcagactgcatataccagacattggacatactaggtgaacatattagaaaaacaattttaaacacattc------------------------aaagaactaaaggaaaccttgtcaaaagaactaaaggaatgcatgagaatgatatctcaccaaatacagaacatcaataatgagatggaatgttaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      77051 1342 +    290775 ggcttattcagattttctatttcctcttgtgtcaatttaggtaattagtttttctagaaatgtatccatttcatcaaaggtgtctaatacgttagcataaacttgtttgtaggatttctttataatcctttaaatttccataaaatttgtagtgatgtgcccaatttcatttctgaatttaagaaattgaggccattt------tttttcttggcaagcctagctaaaggtttgtcaattgtgttgttattttccacaattcaacttttggtttctttacttttctctattgtgttttattttctgttccatctactcttgctctcatctttattatttccttccttctgcttgctttggggttagttttctcttcttttccttgcttct--taccatagaaagttgaattattgattagaggtatttttcttttccaaagtaggcatctacagctatagattttcctctaagcactgctttttccccatctcataaatgttgacgtgttatggtttcatttc-atttcatgcataattc--tctaattt--cccgtg--tttttttctttcacctgttatttgtggattcctgaagtttccaactgttggtgattactaattcaattccattgtggttggaatacatactttatattagttcaa--ttttttttaatttatagataa----tttgtgccctcccatctagtctatcctggagaatgttccatgtgtgtttcaaaagcatg--tataattcatttgttgttgtcaagtaggtcaagttggttgataatgtttcagcctctgtatcctt------------gctgattttctatctagttgttctatcaatggttgataatggagtgttgaaatcttcaactattattaatgatttgtttatttatcccttcaattctgtcattttcacattttatgtatttgggggatgtgttgttaatcgtgtatatgtttataatccttatatcctcctgataaattgaaat-ttttatcattatagaatatgcctctttatttttagtaatgctatttttctcaaggtctactttgtccaacattagtagagctgtctcagctcttttatcatggttttctacatggtatacttttttccaccctc------------------------tttttcaacatgttcatttttaaaatctaaagtacctcttgtagactgcatatTctagacattggacatactaggtgaacatattagacaaacaattttaaacatgttcaaacaactaaaggaaaccttatcaaaagagctaaaggaaaccttgtcaaaagaactaaaggaatgcatgagaatgatatctcaccaaatacagaacatcaataatgagatggaatgttaa
i manLeu1.NW_012099233v1   C 0 C 0
s aotNan1.NW_018509740v1     125116 1368 -    457564 agtttattcagattttctatttcctcttgagtcaattttggtaattagtggttctagaaatttttccatttcatcaaagttgtctaatatgttagcataaagttgttcataagatttctttacaatactttaaatttttataaagttagtagcaatgtgcccaattccttttctgattttaggaatttgaggcctttctcttttttttttttggcaagcctagctaaagatttgtcaattgtgttgtaattttccacaattcaactttttgttttattacttttgtctactgtgttttattttctattccatctactcttgctctcatctttattacttcattccttctgcttgctttcaggttagttttctcttcttttccttgttttttctaccatggaaagttgaattagtgattagaggta-ttttcttttccaatataggcatttacagctacagattttcctctaaacactgctttatccccatcttataaatgttgacatgttatggtttcattttaatttcatgcataattctttttaatttcccatgtg-gtttttttctttcacctgttatttttggattcttgaagtttccaa-tgttggtgagtcctaagttaattccattgtggttggaatacctacactgtattagttcaa--ttcttttaaatttattgataatttgtttgtggactcctatgtagtctatcctggagaatgttccatgtgtgtctcaaaagcatgtatataattcatttgttgttgtcaagtagatcaag----ttgataatgtttcagcctctgtatcctgattttccaactagttgattttctaactagttgttctagcaatgattaataatagagtgttgaaatcttgaactatgattaatgatttgtttagttgtcccttcaattctgttatttttgtgttttatgta-ttgggggatgtgttgttaattgtgtatatgtttataattgttatatctttctgataaattgaaatattttatcaatattgaatatgcctctttattcctagtaacactatttttctcaaggtctagtttgtccagcagtagtagagctgtcccagctcttttgtcatggttttttacatggtgtacttttttccaccctcttttataatctattaaccaccctcttttataacctattaatttttataatctaaactgcctcttgtagactgcatatactaaacactggacttactaggtgaatatattagaaaaacaatttcaaacatattc------------------------aaagaactaaaggaaaccatgtcaaaagaattaaaggaatgtatgataatgatatctcaccacatataaaatatcagtaaggaaatggaacattaa
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            80091 66179 -    242197 I
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I

a score=13104.000000
s hg38.chr6_GL000254v2_alt   810691 4 +   4827813 aaaa
s nomLeu3.chr1a            74511320 4 + 122973662 aaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             29985214 4 + 172585720 aaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29649177 4 - 170955103 aaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2692629 4 -   2996164 aaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     444646 4 +    766320 aaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28902827 4 -  71996105 aaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      78393 4 +    290775 aaaa
i manLeu1.NW_012099233v1   C 0 C 0
s aotNan1.NW_018509740v1     126484 4 -    457564 aaaa
i aotNan1.NW_018509740v1   C 0 I 81065
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            80091 66179 -    242197 I
e otoGar3.GL873550            17838 8883 +  18854210 I
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I
e gorGor5.CYUI01015250v1    5811885 0 +   6154872 C
e panPan2.chr6             30008437 0 + 173848474 C
e panTro5.chr6             29773824 0 + 175400573 C

a score=17423.000000
s hg38.chr6_GL000254v2_alt   810695 7 +   4827813 gaaacaa
s nomLeu3.chr1a            74511324 7 + 122973662 gaaataa
i nomLeu3.chr1a            C 0 I 28704
s rheMac8.chr4             29985218 7 + 172585720 gaaacaa
i rheMac8.chr4             C 0 I 20119
s macFas5.chr4             29649181 7 - 170955103 gaaacaa
i macFas5.chr4             C 0 I 20049
s macNem1.NW_012011356v1    2692633 7 -   2996164 gaaacaa
i macNem1.NW_012011356v1   C 0 I 22786
s cerAty1.NW_012002711v1     444650 7 +    766320 gaaacaa
i cerAty1.NW_012002711v1   C 0 I 20049
s chlSab2.chr17            28902831 7 -  71996105 gaaacaa
i chlSab2.chr17            C 0 I 20014
s manLeu1.NW_012099233v1      78397 7 +    290775 gaaacaa
i manLeu1.NW_012099233v1   C 0 I 21249
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            80091 66179 -    242197 I
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     126488 81065 -    457564 I
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I
e gorGor5.CYUI01015250v1    5811885 0 +   6154872 C
e panPan2.chr6             30008437 0 + 173848474 C
e panTro5.chr6             29773824 0 + 175400573 C

a score=0.000000
s hg38.chr6_GL000254v2_alt   810702 303 +   4827813 ggccgggcgcggtggctcacgccggtaatcccagcactttgggaggccgaggcgggcggatcacgagctcaggagatcgagaccatcccagctaaaacggtgaaaccccgtgtctactaaaaatacaaaaaattagccgggcgtagtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcccgccactgcactccagcctgggcgacagagcgagactctgtctcaaaaaaaaaaaaaaaaaaaaag
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            80091 66179 -    242197 I
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     126488 81065 -    457564 I
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I
e manLeu1.NW_012099233v1      78404 21249 +    290775 I
e chlSab2.chr17            28902838 20014 -  71996105 I
e cerAty1.NW_012002711v1     444657 20049 +    766320 I
e macNem1.NW_012011356v1    2692640 22786 -   2996164 I
e macFas5.chr4             29649188 20049 - 170955103 I
e rheMac8.chr4             29985225 20119 + 172585720 I
e nomLeu3.chr1a            74511331 28704 + 122973662 I
e gorGor5.CYUI01015250v1    5811885   0 +   6154872 C
e panPan2.chr6             30008437   0 + 173848474 C
e panTro5.chr6             29773824   0 + 175400573 C

a score=1076580.000000
s hg38.chr6_GL000254v2_alt   811005 1943 +   4827813 aaaagaaacaaataaaattcagtaattgataaataaaatcgtagaaataaaaacttcactagatagcctcaataacagatttgagaaggcagaagaaagaatcagtaaatttaaagataggtggggaaattatccagtatgaggaacatgaattaaaaagaagaagaatgaacagagtttcagagacctgtgggacacaatccagtgtaccaaaacacataaacgagaattttcaggagaggatagaataaaaggaacagaaggaatatttaaagaaatactagctgaaaaactccaaattcaatgaaaaaatgttaatctacactttcacaaagctcaacaaacttagataaaataaattcaaagagattcacacatagaaacattataatcaaactgccaagaaacaaagaaagaatcttgagggcaaaaagagggaagcaacttatcatgtacaagagattctcagtaagaataagaactaatttctcatgaaaaattacagagtcaggaggcaatgggatgacatattcaaagtagcaaaagtaaaatactgtcaatgaacaattctaaagccagcaaaactattcttcataaatgaactagaaattaaacattctcagattttgaaaactgagagaagctgtaattaccagacctgtcttatgggaaattataaaagcagtcttgcaggttgacatgaaaggacactacatagcaactcgaatccacatgaagaaatgaagaactccagtaaagataactacatgggtaaatataaaagacagtataaatgcaatttgtttgcgatttcctctctcatatgattcaaaagacaaatacataatgaaataattataaatctgtattgataagcctacaatgtataaagatgtaatttgtacggcaataaaaacacaaagaagcagaagagaatggagctgtatggaagcaaaggttttgtgtgctattgaaattaaattgctattaatctgactaaattgttataaattattaattgcaagatccagggcaatatttaaaaaatacctcaaaaagtatagtaaaagaaacaacaaggagaattaagtaaaacactaacaaaatttatttaacatacaaaggcagtaataatggaatagagcaataaaaaacacgatataaagaaaataagtagcaaaatgacaggtcaaaatcctatactatcagtaattacattaaatgtaaatatattaaacaccccctttaaatggcagagacatgaaaaaaaaaaagaaatcctgtcattcatggcaacatggatgaacctggaagacaccatgttaactgaaataagcaggcacagaaagataaagactgtgtgttctcactcacatatggaagctaaaaaatgttgagctcattagaaatagagagtggaattttgattattagagcacaggaaggatcgaagggaggagagagggaaggataggaagagattggttcatggatacaaaattacagctagataCCAGGGGAGAAggctggcaagatggtggaataggaatagctctggtctgcacctcccagcaagattgacccagaaggtggatgatttctgcatttccaactgaggtacccagttcatcttattgggactggttggacagcgggtgcagcccatggagggtgtgccaaagcagggtggggcatcgcctcacccggggagcacaagaggtcaaggaactccctctcctagccaagggaagccgaagccttgagggactgtgtggggaggaacggtgcactctggcacagatactgcgctttcctcacgtcttcgaaacctatagaccaggagattccctctggtgcctatgccaccagggccctgggtttcaagcacaaaactaggaggctgtttaggcagacaccaagctagctgcaggaggtttattttt
s panTro5.chr6             29773824 1942 + 175400573 aaaagaagcaaataaaattcagtaattgataaataaaatcatagaaataaaaacttcactagacagcctcaataacagatttgagaaggcagaagaaagaatcagtaaatttaaagataggtggggaaattatccagtatgaggaacatgaattaaaaagaagaagaatgaacagagtttcagagacctgtgggacacaatcccgtgtaccaaaacacataaacgagaattttcaggagaagatagaataaaaggaacagaaggaatatttaaagaaatactagctgaaaaactccaaattcaatgaaaaaatgttaatctacactttcacaaagctcaacaaacttagataaaataaattcaaagagattcacacatagaaacattataatcaaactgccaagaaacaaagaaagaatcttgagggtaaaaagagggaagcaacttatcatgtacaagagattctcagtaagaataagaactaatttctcatgaaaaattacagagtcaggaggcaatgggatgacatattcaaagtagcaaaagtaaaatactgtcaatgaacaattctaaagccagcaaaactattcttcataaatgaactagaaattaaacattctcagattttgaaaactgagagaagctgtaattaccagacctgtcttatgggaaattataaaagcagtcttgcaggttgacatgaaaggacacgacgtagcaactcgaatccgcatgaagaaatgaagaactccagtaaagataactacatgggtaaatataaaagacagtataaatgcaatttgtttgcgatttcctctctcatatgattcaaaagacaaatacataatgaaataattataaatctgtattgataagcctacaatgtataaagatgtaatttgtacggcaataaaaacacagagaagcagaagagaatggagctgtatggaagcaaaggttttgtgtgctattgaaattaaattgctattaatctgactaaattgttataaattattaattgcaagatccagggcaatatttaaaaaa-acctcaaaaagtatagtaaaagaaacaacaaggagaattaagtaaaacactaacaaaatttatttaacatacaaaggcagtaataatggaatagagcaataaaaaacacgatataaagaaaataagtagcaaaatgacagatcaaaatcctatactatcagtaattacattaaatgtaaatatattaaacaccccctttaaatggcagagacatgaaaaaaaaaaagaaatcctgtcattcatggcaacatggatgaacctggaagacaccatgttaactgaaataagcaggcacagaaagataaagactgtgtgttctcactcacatgtggaagctaaaaaatgttgagctcattagaaatagagagtggaattttgattattagagcacaggaaggatcgaagggaggagagagggaaggataggaagagattggttcatggatacaaaattacagctagataccaggggaggaggctggcaagatggtggaataggaatagctctggtctgcacctcccagcaagattgacccagaaggtggatgatttctgcatttccaactgaggtacccagttcatcttattgggactggttggacagtgggtgcagcccatggagggtgtgccaaagcagggtggggcatcgcctcacccggggagcacaagaggtcgaggaaatccctctcctagccaagggaagccgaagccttgagggactgtgtggggaggaacggtgcactctggcacagatactgcgctttcctcacgtcttcaaaacctatagaccaggagattccctctggtgcctatgccaccagggccctgggtttcaagcacaaaactaggaggctgtttaggcagacaccaagctagctgcaggaggtttattttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30008437 1939 + 173848474 aaaagaagcaaataaaattcagtaattgataaataaaatcatagaaataaaaacttcactagatagcctcaataacagatttgagaaggcagaagaaagaatcagtaaatttaaagataggtggggaaattatccagtatgaggaacatgaattaaaaagaagaagaatgaacagagtttcagagacctgtgggacacaatcccgtgtaccaaaacacataaacgagaattttcaggagaggatagaataaaaggaacagaaggaatatttaaagaaatactagctgaaaaactccaaattcaatgaaaaaatgttaatctacacgttcacaaagctcaacaaacttagataaaataaattcaaagagattcacacatagaaacattataatcaaactgccaagaaacaaagaaagaatcttgagggcaaaaagagggaagcgacttatcatgtacaagagattctcagtaagaataataactaatttcttatgaaaaattacagagtcaggaggcaatgggatgacatattcaaagtagcaaaagtaaaatactgtcaatgaacaattctaaagccagcaaaactattcttcataaatgaactagaaattaaacattctcagattttgaaaactgagagaagctgtaattaccagacctgtcttatgggaaattataaaagcagtcttgcaggttgacatgaaaggacacgacgtagcaactcgaatccgcatgaagaaatgaagaactccagtaaagataactacatgggtaaatataaaagacagtataaatgcaatttgtttgcgatttcctctctcatatgattcaaaagacaaatacataatgaaataattataaatctgtattgataagcctacaatgtataaagatgtaatttgtacggcaataaaaacacagagaagcagaagagaatggagctgtatggaagcaaaggttttgtgtgctattgaaattaaattgctattaatctgactaaattgttataaattattaattgcaagatccagggcaatatttaaaaaatacctcaaaaagtatagtaaaagaaacaacaaggagaattaagtaaaacactaacaaaatttatttaacatacaaaggcagtaataatggaatagagcaataaaaaacacgatataaagaaaataagtagcaaaatgacaggtcaaaatcctatactatcagtaattacattaaatgtaaatatattaaacaccccctttaaatggcagagacatgaaaaaaaaaaagaaatcctgtcattcatggcaacatggatgaacctggaagacaccatgttaactgaaataagcaggcacagaaagat----actgtgtgttctcactcacatatggaagctaaaaaatgttgagctcattagaaatagagagtggaattttgattattagagcacaggaaggatcaaagggaggagagaaggaaggataggaagagattggttcatggatacaaaattacagctagataccaggggaggaggctggcaagatggtggaataggaatagctctggtctgcacctcccagcaagattgacccagaaggtggatgatttctgcatttccaactgaggtacccagttcatcttattgggactggttggacagcgggtgcagcccatggagggtgtgccaaagcagggtggggcattgcctcacccggggagcacaagaggtcaaggaactccctctcctagccaagggaagccgaagccttgagggactgtgtggggaggaacggtgcactctggcacagatactgcgctttcctcacgtcttcgaaacctatagaccacgagattccctctggtgcctatgccaccagggccctgggtttcaagcacaaaactaggaggctgtttaggcagacaccaagctagctgcaggaggtttattttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5811885 1942 +   6154872 aaaagaaacaaataaaattcagtaattgataaataaaatcatagaaataaaaacttcactagatagcctcaataacagatttgagaaggcagaagaaagaatcagtaaatttaaagataggtggggaaattatccagtatgaggaacatgaattaaaaagaagaagaatgaacagagtttcagagacctgtgggacacaatcccgtgtaccaaaacacataaacgagaattttcaggagaggatagaataaaaggaacagaaggaatatttaaagaaatactagctgaaaaactccaaattcaatgaaaaaatgttaatctacactttcacaaagctcaacaaacttagataaaataaattcaaagagattcacacatagaaacattataatcaaactgccaagaaacaaagaaagaatcttgagggcaaaaagagggaagcgacttatcatgtacaagagattctcagtaagaataagaactaatttctcatgaaaaattacagagtcaggaggcaatgggatgacatattcaaagtagcaaaagtaaaatactgtcaatgaacaattctaaagcctgcaaaactattcttcataaatgaactagaaattaaacattctcagattttgaaaactgagagaagctgtaattaccagacctgtcttatgggaaattataaaagcagtcttgcaggttgacatgaaaggacactacatagcaactcgaatccgcatgaagaaatgaagaactccagtaaaggtaactacatgggtaaatataaaagacagtataaatgcaatttgtttgcgatttcctctctcatatgattcaaaagacaaatacataatgaaataattataaatctgtattgataagcctacaatgtataaagatgtaatttgtatggcaataaaaacacaaagaagcagaagagaatggagctgtatggaagcaaaggttttgtgtgctattgaaattaaattgctattaatctgactaaattgttataaattattaattgcaagatccagggcaatatttaaaaaatacctcaaaaagtatagtaaaagaaacaacaaggagaattaagtaaaacactaacaaaatttgtttaacatacaaaggtagtaataatggaatagaacaataaaaaacacgatataaagaaaataagtagcaaaatgacagatcaaaatcctatactatcagtaattacattaaatgtaaatatattaaacaccccctttaaatggcagagacatg-aaaaaaaaaagaaatcctgtcattcatgtcaacatggatgaacctggaagacaccatgttaactgaaataagcaggcacagaaagataaagactgtgtgttctcactcacatatggaagctaaaaaatgttgagctcattagaaatagagagaggaattttgattattagagcacaggaaggatcaaagggaggagagagggaagtataggaagagattggttcatggatacaaaattacagctagataccaggggaggaggctggcaagatggtggaataggaatagctctggtctgcacctcccagcaagattgacccagaaggtggatgatttctgcatttccaactaaggtacccagttcatcttattgggactggttggacagcgggtgcagcccatggagggtgtgccaaagcagggtggggcatcgcctcacccggggagcacaagaggtcgaggaactccctctcctagccaagggaagccgaagccttgagggactgtgtggggaggaacggtgcactctggcacagatactgcgctttcctcacgtcttcgaaacctatagaccaggagattccctctggtgcctatgccaccagggccctgggtttcaagcacaaaactaggaggctgtttaggcagacaccaagctagctgcaggaggtttattttt
i gorGor5.CYUI01015250v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            80091 66179 -    242197 I
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     126488 81065 -    457564 I
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I
e manLeu1.NW_012099233v1      78404 21249 +    290775 I
e chlSab2.chr17            28902838 20014 -  71996105 I
e cerAty1.NW_012002711v1     444657 20049 +    766320 I
e macNem1.NW_012011356v1    2692640 22786 -   2996164 I
e macFas5.chr4             29649188 20049 - 170955103 I
e rheMac8.chr4             29985225 20119 + 172585720 I
e nomLeu3.chr1a            74511331 28704 + 122973662 I

a score=2863480.000000
s hg38.chr6_GL000254v2_alt   812948 745 +   4827813 tcTGATTAAGTCAAGcagcagttctcaccgtggctaattaggcctcccactgggacatttggcaatgtctggagctggttttgattgtcacaattagagaggatgcactactatcacctagtgggtagagccccgagatggtgctaaacatcctacaatgcacaggacagcacccccaacaaaggatgatccagtcaaaatcgtcagtagtactgaggtggagGGCACTGATCTTTAGATCTTGTGACTAggctttttctttctg--agtaacatggaaactgctgaaagattttgagataagaagtggtatgatctgagt--tgttataaatgggttactctggcttccatgttgagaatatactaaaggttaagggaagaaccagaggattatttcaatcatccaagcaagagatgttg---acaaggacagaccagagtggtggtcctaacagtgataacgatttgtcagtttcacaacatatttttgcaggtagagccaatagaatttgtgggtagattatatgtgagtgagatgaagaagagtcagtatcacaagatttttgtctgagaaactagaagaatggattttcattacgggagatgagaaaggctacagaagaagcacattgtgggggagagggtgggtagtaaggagctcagtttatggcatgttaaatctgagatgtgtattagataccaaaa-gctgctggtgggtagacaattggacataggaatctggaggttagga
s panTro5.chr6             29775766 745 + 175400573 tcTGATTAAGTCAAGcagcagttctcaccgtggataattaggcctcccactgggacatttggcaatgtctggagctggttttgattgtcacaattagagaggaggcactactatcacctagtgggtagagccccgagatggtgctaaacatcctacaatgcacaggacagcacccccaacaaaggatgatccagtcaaaatcgtcagtagtactgaggtggagGGCACTGATCTTTAGATCTTGTGACTAggctttttctttctg--agtaacatggaaactgctgaaagattttgagataagaagtggtatgatctgagt--tgttataaatgtgttactctggcttccatgttgagaatatactaaaggttaagggaagaaccagaggattatttcaatcatccaagcaagagatgttg---acaaggacagaccagagtggtggtcctaacagtgataacgacttgtcagtttcacaacatatttttgcaggtagagccaatagaatttgtgggtagattatatgtcagtgagatgaagaagagtcagtatcacaagatttttgtctgagaaactagaagaatggattttcattacgggagatgagaaaggctacagaagaagcacattgtgggggagagggtgggtagtaaggagctcagtttatggcatgttaaatctgagatgtgtattagataccaaaa-gctgctggtgggtagacaattggacataggaatctggaggttagga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30010376 745 + 173848474 tcTGATTAAGTCAAGcagcagttctcactgtggataattaggcctcccactgggacatttggcaatgtctggagctggttttgattgtcacaattagagaggaggcactactatcacctagtgggtagagccccgagatggtgctaaacatcctacaatgcacaggacagcacccccaacaaaggatgatccagtcaaaatcgtcagtagtactgaggtggagGGCACTGATCTTTAGATCTTGTGACTAggctttttctttctg--agtaacatggaaactgctgaaagattttgagataagaagtggtatgatctgagt--tgttataaatgggttactctggcttccatgttgagaatatactaaaggttaagggaagaaccagaggattatttcaatcatccaagcaagagatgttg---acaaggacagaccagagtggtggtcctaacagtgataacgacttgtcagtttcacaacatatttttgcaggtagagccaatagaatttgtgggtagattatatgtgagtgagatgaagaagagtcagtatcacaagatttttgtctgagaaactagaagaatggattttcattacgggagatgagaaaggctacagaagaagcacattgtgggggagagggtgggtagtaaggagctcagtttatggcatgttaaatctgagatgtgtattagataccaaaa-gctgctggtgggtagacaattggacataggaatctggaggttagga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5813827 745 +   6154872 tcTGATTAAGTCAAGcagcagttctcaccgtggataattaggcctcccactgggacatttggcaatgtctggagctggttttgattgtcacaattagagaggaggcactactatcacctagtgggtagagccccgagatggtgctaaacatcctacaatgcacaggacagcacccccaacaaaggatgatccagtcaaaatcgtcagtagtactgaggtggagGGCACTGATCTTTAGATCTTGTGACTAggctttttctttctg--agtaacatgggaactgctgaaagattttgagataagaagtggtatgatctgagt--tgttataaatgggttactctggcttccatgtagagaatatactaaaggttaagggaagaaccagaggattacttcaatcatccaagcaagagatgttg---acaaggacagaccagagtggtggtcctaacagtgataacgacttatcagtttcacaacatatttttgaaggtagagccaatagaatttgtgggtagattatatgtgagtgagatgaagaagagtcagtatcacaagatttttgtctgagaaactagaagaatggattttcattacaggagatgagaaaggctacagaagaagcacattgtgggggagagggtgggtagtaaggagctcagtttatggcatgttaaatctgagatgtgtattagataccaaaa-gctgctggtgggtagacagttggacataggaatctggaggttagga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74540035 726 + 122973662 tCTGATGAAGTCAAGcagcagttctcaccgtggatgattatgtctcccactgggacatttggcaatgtctggagctggttttgattgtcacaattagagaggaggcactactgtcacctagtgggtagagccctgagatggtgctaaacatcctctagtgcacaggacagcacccccaacaaagggtgatccagtcaaaatcgtcagtagtactgaggtggagGGCACTGATCTTTAGGTCTTGTGACTAggctttttctttctg--agtaacatggaaactgctgaaagattttgagataagaggtggtatgatctgagt--tgttctaaatgggttactctggcttccatgttgagaatatactaaaggttaagggaagaaccagaggattatttcaatcatccaagcaagagatgttg---acaaggacagaccagagtggtggtcctaacagtgataacgacttgtcagtttcacaacatatttttgcaggtagagccaatagaatttgtggatagattatatgtgagtgagatgaagaagagtcagtatcacaagatttttgtctgagaaactagaagaatggattttcattacgggagatgagaaaggctacagaagaagcacatcgtgggggagagagtgggtagtaaggagttcagtttatggcatgttaaacctgagctgtgtattagataccaaaa-gctgctggtgggtagaca-------------------aggttagga
i nomLeu3.chr1a            I 28704 C 0
s rheMac8.chr4             30005344 750 + 172585720 tCTGATGAAGTCAAGcagcagttctcaccgtggatgattatgcctcccactgggacatttggcaatgtctggagctggttttgattgtcacaattggagaagaggcactattgtcaccta-tgggtagagccctgggatggtgctaaacatcctacaatgcataggacagcacccccaa-aaaggatgatccagtcaaaattgtcagtagtactgaggtggagaGCACTGATCGTtaggtcttgtgactaggctttttctttctttctgtaagacagaaactgttggaagattttgagacaagaagtggtatgatccgagttgtgttttaaatgggttactctggcttccatgttgagaatatactaaaggttaagggaagaaccagaggattatttcaatcatccaagcaagaggtgatgattacaaggacagaccagagtggtggtcctaacagtgataacaacttgtcagattcaccacatatttttgcaggtagagccaatagaatttgtggatagattatatgtgggtgagatgaagaagagtcagtatcacaagattttt-tctgagaaactagaagaatgaattttcattataggagacaagaaaggctacagaagaagcacattgtgggggagagggtgggtagtaaggagttcagtttatggcatgttaaacctgagatgtgtattagacaccaaaatgctgctgatgggtagacaattggacataggaatctgaaggttagga
i rheMac8.chr4             I 20119 C 0
s macFas5.chr4             29669237 750 - 170955103 tCTGATGAAGTCAAGcagcagttctcaccgtggatgattatgcctcccactgggacatttggcaatgtctggagctggttttgattgtcacaattggagaagaggcactattgtcaccta-tgggtagagccctgggatggtgctaaacatcctacaatgcataggacagcacccccaa-aaaggatgatccagtcaaaattgtcagtagtactgaggtggagaGCACTGATCGTtaggtcttgtgactaggctttttctttctttctgtaagacagaaactgttggaagattttgagacaagaagtggtatgatccgagttgtgttttaaatgggttactctggcttccatgttgagaatatactaaaggttaagggaagaaccagaggattatttcaatcatccaagcaagaggtgatgattacaaggacagaccagagtggtggtcctaacagtgataacaacttgtcagattcaccacatatttttgcaggtagagccaatagaatttgtggatagattatatgtgggtgagatgaagaagagtcagtatcacaagattttt-tctgagaaactagaagaatgaattttcattataggagacaagaaaggctacagaagaagcacattgtgggggagagggtgggtagtaaggagttcagtttatggcatgttaaacctgagatgtgtattagacaccaaaatgctgctgatgggtagacaattggacataggaatctgaaggttagga
i macFas5.chr4             I 20049 C 0
s macNem1.NW_012011356v1    2715426 750 -   2996164 tCTGATGAAGTCAAGcagcagttctcaccgtggatgattatgcctcccactgggacatttggcaatgtctggagctggttttgattgtcacaattggagaagaggcactattgtcaccta-tgggtagagccctgggatggtgctaaacatcctacaatgcataggacagcacccccaa-aaaggatgatccagtcaaaattgtcagtagtactgaggtggagaGCACTGATCGTtaggtcttgtgactaggctttttctttctttctgtaagacagaaactgttggaagattttgagacaagaagtggtatgatccgagttgtgttttaaatgggttactctggcttccatgttgagaatttactaaaggttaagggaagaaccagaggattatttcaatcatccaagcaagaggtgatgattacaaggacagaccagagtggtggtcctaacagtgataacaacttgtcagattcaccacatatttttgcaggtagagccaatagaatttgtggatagattatatgtgggtgagatgaagaagagtcagtatcacaagattttt-tctgagaaactagaagaatgaattttcattataggagacaagaaaggctacagaagaagcacattgtgggggagagggtgggtagtaaggagttcagtttatggcatgttaaacctgagatgtgtattagacaccaaaatgctgctgatgggtagacaattggacataggaatctgaaggttagga
i macNem1.NW_012011356v1   I 22786 C 0
s cerAty1.NW_012002711v1     464706 750 +    766320 tCTGATGAAGTCAAGcagcagttctcaccgtggatgattatgcctcccactgggacatttggcaatgtctggagctggttttgattgtcacaattggagaagaggcactattgtaaccta-tgggtagagccctgggatggtgctaaacatcctacaatgcataggacagcacccccaa-aaaggatgatccagtcaaaattgtcagtagtactgaggtggagaGCACTGATCGTtaggtcttgtgactaggctttttctttctttctgtaagacagaaactgttggaagattttgagacaagaagtggtatgatctgagttgtgttttaaatgggttactctggcttccatgttgagaatatactaaaggttaagggaagaaccagaggattatttcaatcatccaagcaagaggtgatgattacaaggacagaccagagtggtggtcctaacagtgatagcaacttgtcagattcaccacatatttttgcaggtagagtcaatagaatttgtggatagattatatgtgggtgaaatgaagaagagtcagtatcacaagattttt-tctgagaaactagaagaatgaattttcattatgggagacgagaaaggctacagaagaagcacattgtgggggagagggtgggtagtaaggagttcagtttatggcatgttaaacctgagatgtgtattagacaccaaaatgctgctgatgggtagacaattggacataggaatctgaaggttagga
i cerAty1.NW_012002711v1   I 20049 C 0
s chlSab2.chr17            28922852 746 -  71996105 tCTGATGAAGTCAAGcagcagttctcaccgtggatgattatgcctcccactgggacatttggcaatgtctggagctggttttgattgtcacaattggagaagaggcactattgtcacctagtgggtagagccctgggatggtgctaaacatcctacaatgcacaagacagcacccccaa-aaaggatgatccagtcaaaatcatcagtagtactgagttggagaGCACTgatctttaggtcttgtgactaggctttttctttctttctgtaagacggaaactgttggaagattttgagacaagaagtggtatgatctgagttgtgttttaaatgggttactctggcttccatgttgagaatatactaaaggttaagggaagaaccagagcattatttcaatcatccaagcaagagatgatgattacaaggacagaccagagtggtggtcctaacagtgataacaacttgtcagatttaccacatatttttgcagatagagccaatagaatttgtggatagattatatgtgggtgagatgaagaagagtcagtatcataagattttt-tctgagaaactagaagaatgaattttcattatgggagatgagaaaggctacagaagaagcacattgtgggggagagggtgggtagtaaggagttcagtgcatggcatgttaaacctgagatgtt-----aacaccaaaatgctgctggtgggtagacaattggacataggaatctgaaggttagga
i chlSab2.chr17            I 20014 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            80091 66179 -    242197 I
e otoGar3.GL873550            17838 8883 +  18854210 I
e aotNan1.NW_018509740v1     126488 81065 -    457564 I
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I
e manLeu1.NW_012099233v1      78404 21249 +    290775 I

a score=1230086.000000
s hg38.chr6_GL000254v2_alt   813693 283 +   4827813 gaaaaatccagcctggaaatataaatttaggagtcatcagcatatagatggtgtacaatgtcataagactggatgac--------ggaagtgcatg----taaaaaaggaaagaggactgaaccctaggcacagcagggag--gaggagaaaccaataaaggagattcagaaggagcagctgggagactttggtga-tttgaagctgtc--agtcagctcagactgccataacaaaataccataaactgggtggcttcaacaacagaagttgatttctcacagttctggaggctgggaag
s panTro5.chr6             29776511 285 + 175400573 gaaaaatccagcctggaaatataaatttaggagtcatcagcatatagatggtgtacaatgtcataaaactggatgac--------ggaagtgcatg----taaaaaaggaaagaggactgaaccctaggcacagcagggagaggaggagaaaccaataaaggagattcagaaggagcagctgggagactttggtga-tttgaagctgtc--agtcagctcagattgccataacaaaataccataaactgggtggcttcaacaacagaagttgatttctcacagttctggaggctgggaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30011121 285 + 173848474 gaaaaatccagcctggaaatataaatttaggagtcatcagcatatagatggtgtacaatgtcataagactggatgac--------ggaagtgcatg----taaaaaaggaaagaggactgaaccctaggcacagcagggagaggaggagaaaccaataaaggagattcagaaggagcagctgggagactttggtga-tttgaagctgtc--agtcagctcagattgccataacaaaataccataaactgggtggcttcaacaacagaagttgatttctcacagttctggaggctgggaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5814572 285 +   6154872 gaaaaatccagcctggaaatataaatttaggagtcatcagcatatagatggtgtacaatgtcataagactggatgag--------ggaagtgcatg----taaaaaaggaaagaggactgaaccctaggcacagcagggagaggaggagaaaccaataaaggagattcagaaggagcagctgggagaatttggtga-tttgaagctgtc--agtcagctcagactgacataacaaaataccataaactttgtggcttcaacaacagaagttgatttctcacagttctggaggctgggaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74540761 289 + 122973662 gaaaaatccagactggaaatataaatttaggagtcatcagcatatagatggtgtacaatgtcataagactgggtgag--------ggaagtgcatgcatatgaaaaaggaaagaggactgaaccctgggcacagcagggagaggaggagaaatcaataaaggagattcagaaggagcagctgggagactttggtga-tttgaagctgtc--agtcagctcagactgccataacaaaataccataaactgggtggcttgaacaacagaagtttatttctcacagttctggaggctgggaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30006094 286 + 172585720 gaaaaatccaggttggaaatataaatttaggagtcatcagcatgtagatggtgtacaatgtcataagactggatgag--------ggaagtgcata----caaaaaaggaaagaggacggaaccctgggcacagcagggagaggaggagaaaccaataaaggagattcagaaggaacagctggaagactttggtgcttttgaagctgtc--agtcagctcagactgccataacaaaatactataaactgggtggcttgaacaacagaagtttatttttcacaatgctggaggctgggaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29669987 286 - 170955103 gaaaaatccaggttggaaatataaatttaggagtcatcagcatgtagatggtgtacgatgtcataagactggatgag--------ggaagtgcata----caaaaaaggaaagaggacggaaccctgggcacagcagggagaggaggagaaaccaataaaggagattcagaaggaacagctggaagactttggtgcttttgaagctgtc--agtcagctcagactgccataacaaaatactataaactgggtggcttgaacaacagaagtttatttttcacagtgctggaggctgggaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2716176 286 -   2996164 gaaaaatccaggttggaaatataaatttaggagtcatcagcatgtagatggtgtacgatgtcataagactggatgag--------ggaagtgcata----caaaaaaggaaagaggacggaaccctgggcacagcagggagaggaggagaaaccaataaaggagattcagaaggaacagctggaagactttggtgcttttgaagctgtc--agtcagctcagactgccataacaaaatactataaactgggtggcttgaacaacagaagtttatttttcacagtgctggaggctgggaag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     465456 286 +    766320 gaaaaatccaggttggaaatataaatttaggagtcatcagcatgtagatggtgtacaacgtcataagactggatgag--------ggaagtgcata----taaaaaaggaaagaagacggaaccctgggcacagcagggagaggaggagaaaccaataaaggagattcagaaggaacagttgaaagactttggtgcttttgaagctgtc--agtcagctcagactgccataacaaaatactataaactgggtggcttaaacaacagaagtttatttttcacagtgctggaggctgggaag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28923598 284 -  71996105 gaaaaatccaggttggaaatataaatttaggagtcatcagcatgtagatggtgtatgacgtcataagactggatgag--------ggaagtgcata----taaaaaaggaaagaggacagaaccctgggcacagcagggagaggaggagaaaccaataaaggagattcagaaggaacagctggaagactttggtgcttttgaagctgtc--agtcagctcagactgccataacaaaataccataaactgggtggcttgaacaacagaagtttatttttcacagtgctggaggc--ggaag
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550            26721 279 +  18854210 gaaagagcaaggctggaaataaaactttaagagtcatctgcatatagaatgtatacaaagccataaaactggatgagaccagctaggaagtacacg----tagaaa------------tgaactctgggcacagcggcaa---gaagagaaaccaac-aaggaaatagaaaatgagcagctgggagagtgtggtgcttctggacctgccttagtcagctca-atttctataacaaaatcccacagactgactggcttaaacaatagaaacttatttctcacagttctggggtctgagaag
i otoGar3.GL873550         I 8883 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            80091 66179 -    242197 I
e aotNan1.NW_018509740v1     126488 81065 -    457564 I
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I
e manLeu1.NW_012099233v1      78404 21249 +    290775 I

a score=538657.000000
s hg38.chr6_GL000254v2_alt   813976 95 +   4827813 ttcaagatcaagatgctggctgattttgttcctggtgatggctctcctcctggcttgcagacaactccctacttgctgcctcctcacgtggcctt
s panTro5.chr6             29776796 95 + 175400573 ttcaagatcaagatgctggctgattttgttcctggtgatggctctcctcctggcttgtagacaactccctacttgctgcctcctcacgtggcctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30011406 95 + 173848474 ttcaagatcaagatgctggctgattttgttcctggtgatggctctcctcctggcttgtagacaactccctacttgctgcctcctcacgtggcctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5814857 95 +   6154872 ttcaagatcaagatgctggctgattttgttcctggtgatggctctcctcctggcttgcagacaactccctacttgctgcctcctcacgtggcctt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74541050 95 + 122973662 ttcaagatcaagatgcaggctgattttgttcctggtgatggctctcctcctggcttgcagacaactccctacttgctgcctcctcacatggcctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30006380 95 + 172585720 ttcaagatcaagatgttgactgattttggtcctggtgatggctctcctcctggcttgcagacaactccctacttgctgcctcctcacaaggcctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29670273 95 - 170955103 ttcaagatcaagatgttgactgattttggtcctggtgatggctctcctcctggcttgcagacaactccctacttgctgcctcctcacaaggcctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2716462 95 -   2996164 ttcaagatcgagatgttgactgattttggtcctggtgatggctctcctcctggcttgcagacaactctctacttgctgcctcctcacaaggcctt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     465742 95 +    766320 ttcaagatcaagatgttgactgattttgttcctggtgatggctctcctcctggcttgcagacaactccctacttgctgcctcctcacaaggcctt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28923882 95 -  71996105 ttcaagatcaaaatgttgactgattttgttcctggtgatggctctcctcctggcttgcagacaactccctacttgctgcctcctcacaaggcctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      99653 95 +    290775 ttcaagatcaagatgttgactgattttgttcctggtgatggctctcctcctggcttgcagacaactccctacttgctgcctcctcacaaggcctt
i manLeu1.NW_012099233v1   I 21249 C 0
s otoGar3.GL873550            27000 95 +  18854210 ttcaagatcaagataccagctgatttggtccctggtgagggctctcctcctggcttgcagacgggtcccttcttgcttcctccacacatagcttt
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e saiBol1.JH378357            80091 66179 -    242197 I
e aotNan1.NW_018509740v1     126488 81065 -    457564 I
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I

a score=1896495.000000
s hg38.chr6_GL000254v2_alt   814071 246 +   4827813 tcctct-----------------------tttataaggaaactaatcctatttggc-----cctcacctttgtgacctcatttaac--tataattacctcctaaaatgcccatttcaaataccatcacattgaggattagattttcaacatatgaattttggggggggacacaattcagtccatagcaga----agt-----gaaaggcatgttccaaaaaggaaagctaagtccactctattgaaaagcttctaacaggtcaagtaacatgaggactgaaaact
s panTro5.chr6             29776891 245 + 175400573 ccctct-----------------------tttataaggaaaataatcctatttggc-----cctcacctttgtgacctcatttaac--tataattacctcctaaaatgcccatttcaaataccatcacattgaggattagattttcaacatatgaattttggggggg-acacaattcagtccatagcaga----agt-----gaaaggcatgttccaaaaaggaaagctaagtccactctattgaaaagcttctaacaggtcaagtaacatgaggactgaaaact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30011501 245 + 173848474 ccctct-----------------------tttataaggaaaataatcctatttggc-----cctcacctttgtgacctcatttaac--tataattacctcctaaaatgcccatttcaaataccatcacattgaggattagattttcaacatatgaattttggggggg-acacaattcagtccatagcaga----agt-----gaaaggcatgttccaaaaaggaaagctaagtccactctattgaaaagcttctaacaggtcaagtaacatgaggactgaaaact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5814952 245 +   6154872 tcctct-----------------------tttataaggaaactaatcctatttggc-----cctcacctttgtgacctcatttaac--tataattacctcctaaaatgcccatttcaaataccatcacattgaggattagattttcaacatatgaattttgggaggg-acacaattcagtccatagcaga----agt-----gaaaggcatgttccaaaaaggaaagctaagtccactctattgaaaatcttctaacaggtcaagtaacatgaggattgaaaact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74541145 246 + 122973662 tcctct-----------------------tttataaggaaactaatcctatttggc-----cctcacctttgtgacctcatttaac--tataattacctcctaaaatgcccatttcaaataccatcatattgaggattagatcttcaacatatgaattttggagggagacacaattcagtccatagcaga----agt-----gaaaggcatgttccaaaaaggaaagctaagtccactctattgaaaagcttctaactggtcaagtaatatgaggactgaaaact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30006475 270 + 172585720 tcccatgctcttactctctttcctccta-tttgtaaggaaactaatcctattaggc-----cctcacctttgtgacctcatttaacctcataattacctcctaaaatgcccatttcaaatacgatcacattgaggattagatcttcaacgtacgaattttgaggggggacacaattcagtccttagcaga----agt-----gaaatgtatgttccaaaaaggaaagctaagtccactctattgaaaagcttctaactggtcaagtaacatgaggactgaaaact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29670368 270 - 170955103 tcccatgctcttactctctttcctccta-tttgtaaggaaactaatcctattaggc-----cctcacctttgtgacctcatttaacctcataattacctcctaaaatgcccatttcaaataccatcacattgaggattagatcttcaacgtacgaattttgaggggggacacaattcagtccttagcaga----agt-----gaaatgtatgttccaaaaaggaaagctaagtccactctattgaaaaacttctaactggtcaagtaacatgaggactgaaaact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2716557 269 -   2996164 tcccatgc-cttactctctttcctccta-tttgtaaggaaactaatcctattaggc-----cctcacctttgtgacctcatttaacctcataattacctcctaaaatgcccatttcaaataccatcacattgaggattagatcttcaacgtacgaattttgaggggggacacaattcagtccttagcaga----agt-----gaaatgtatgttccaaaaaggaaagctaagtccactctattgaaaagcttctaactggtcaagtaacatgaggactgaaaact
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     465837 271 +    766320 tcccatgctcttactctctttcctcctattttataaggaaactaatcctattaggc-----cctcacctttgtgacctcatttaacctcataattacctcctaaaatgcccatttcaaataccatcacattgaggattagatcttcaacgtatgaattttgaggggggacacaattcagtccatagcaga----agt-----gaaaggtatgttccaaaaaggaaagctaagtccactctattgaaaagcttctaactagtcaagtaacatgaggactgaaaact
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28923977 271 -  71996105 tcccatactcttactctctttcctcctattttgtaaggaaactaatcctattaggc-----cctcacctttgtgacctcatttaacctcataattaccttctaaaatgcccatttcaaataccatcacattgaggattagatcttcaacgtatgaattttgagggggaacacaattcagtccttagcaga----agt-----gaaatgtatgttccaaaaaggaaagctaagtccactctattgaaaagcttctaactggtcaagtaacatgaggattgaaaact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1      99748 271 +    290775 tcccatgctcttactctctttcctcctattttataaggaaattaatcctattaggc-----cctcacctttgtgaccacatttaacctcataattacctcctaaaatgcccatttcaaataccatcacattgaggattagatcttcaacgtatgaattttgaggggggacacaattcagtccatagcaGa----agt-----gaaaggtatgttccaaaaaggaaagctaagtccactctattgaaaagcttctaactagtcaagtaacatgaggactgaaaact
i manLeu1.NW_012099233v1   C 0 C 0
s saiBol1.JH378357           146270 217 -    242197 tcctct-----------------------tttataaggaaactaaccctattaggc-----cctcacctttatgaccccatttaac--tataattacctcctaaaatgcccatttcaaataccatcacattgaagattagttcttcaacatatgaattttgaggc-------------------------------------gaAAGGCAAgttccaaaaagg-aacctaagtgcactctatagatatgcttctaattagttaagtagtgtgaagactgaaaact
i saiBol1.JH378357         I 66179 C 0
s cebCap1.NW_016107755v1     148686 250 -   1771730 TCctct-----------------------tttataaggaaactaaccctattaggc-----cctcacctttgtgacctcatttaac--tataattacctcctaaaatgcccatttcaaatactatcacattgaagattagatcttcaacatatgaattttgaggcaa-acataattcagtccatagcgga----agtcaagtgaaaggcaagttccaaaaaggaaacctaagtgcactctatagatatgcttctaattagttaagtagtatgaggactgaaaact
i cebCap1.NW_016107755v1   N 0 C 0
s aotNan1.NW_018509740v1     207553 250 -    457564 tcctct-----------------------tttataaggaaactaaccctattaggc-----cctcacctttgtgacatcatttaac--tataattacctcctaaaatgcccatttcaaataccatcacattgaagattagatcttcaacatatgaattttgaggcaa-acacaattcagtccatagcgga----agtcaagtgaaaggcaagttccaaaaaggaaacctaagtgcactctatagatatgcttctaattagttaagtagtatgaggactgaaaact
i aotNan1.NW_018509740v1   I 81065 C 0
s otoGar3.GL873550            27095 268 +  18854210 ttctct---gtctcgctctctcctctt--cttataaggaggtcaattctattgggttagaatctca-ctctataattccatttaac--cataattacctcctaaaatgctcattttaaatatcatcacaatgagaattagtacttgaacatataaatttggaggca--acccaattcagtccagagcagaagccagt-----gaaaagcatgttctaaaaagaaaagatta-tccactctatt-acatgcttctaattggtcaagtaatataaggactgaaggtt
i otoGar3.GL873550         C 0 I 306
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I

a score=182057.000000
s hg38.chr6_GL000254v2_alt   814317 26 +   4827813 actatatcaatgtggaggtcagtttg
s panTro5.chr6             29777136 25 + 175400573 actatatcaatgtggaggtcagtt-g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30011746 25 + 173848474 actatatcaatgtggaggtcagtt-g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5815197 26 +   6154872 actatatcaatgtggaggtcagtttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74541391 26 + 122973662 actatatcaatgtggaggtcagtttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30006745 26 + 172585720 actatatcaatgtggaggtcggtttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29670638 26 - 170955103 actatatcaatgtggaggtcggtttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2716826 26 -   2996164 agtatatcaatgtggaggtcggtttg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     466108 26 +    766320 actatatcaatgtggaggtcggtttg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28924248 26 -  71996105 actatatcaatgtggaggtcggtttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     100019 19 +    290775 actatatcaatgt-------ggtttg
i manLeu1.NW_012099233v1   C 0 C 0
s saiBol1.JH378357           146487 26 -    242197 actatatcaatgtggaggttggtttg
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     148936 26 -   1771730 actatatcaatgtggaggttggtttg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     207803 26 -    457564 actatatcaatgtggaggttggtttg
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e otoGar3.GL873550            27363 306 +  18854210 I
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I

a score=5357019.000000
s hg38.chr6_GL000254v2_alt   814343 677 +   4827813 tgaccttcgatgaaaggt-ttccagtgcagaaaccttgttggagccaacccgaaagagaat-----------------------tcaaggacttggatggtagctagggggaagtgaagtcaagagaagattattttctgatgagtga-----aatcaaagtatgtttatgtattgatggggatggtccactggaaggacaaattatattacaggaaaga--g-gggaaagattagagtaatgtccctgaataagtggaaagggatggaatatagtgg------------------------gcaagtgggggtactggcatcagacagatgcaaaatag--tatattcctagcagtatcagaagaaaaggtggagtcccatatgtgagcacagatgcaagtaggtgaacagatgggttagtaa---------gaacttctctttttattgctttacattt-tttcagt-aaaaaatgaagtaaaatttttatctgagaaagatgatattatttgagaga---gag---gagtactggggatttgaggggagaccagaaagtatgcatgagttacgtaggagagggga-aagtgagtggactaggaaaata-----tgatta-tcaatgacattagccccttcctcttaaagtagtggtcatgaatgtaaagtgaaacctct-------cagtgtggctattggctttccttcggccacagtcagctgaacaaatatagggagagagtaggactatagttggattt
s panTro5.chr6             29777161 677 + 175400573 tgaccttcgatgaaaggt-ttccagtgcagaaaccttgttggagccaacccaaaagagaat-----------------------tcaaggacttggatggtagctagggggaagtgaagtcaagagaagattattttctgatgagtga-----aatcaaagtatgtttatgcattgatggggatggtccactggaaggacaaattatattacaggaaaga--g-gggaaagattagagtaatgtccctgaataagtggaaagggatggaatatagtgg------------------------gcaagtgggggtactggcatcagacagatgcaaaatag--tatattcctagcagtatcagaagaaaaggtggagtcctatatgtgagcacagatgcaagtaggtgaacagatgggttagtaa---------gaacttctctttttattgctttacattt-tttcagt-aaaaaatgaagtaaaatttttatctgagaaagatgatattatttgagaga---gag---gagtactggggatttcaggagagaccagaaagtatgcatgagttacgtaggagagggga-aagtgagtggactaggaaaata-----tgatta-tcaatgacattagccccttcctcttaaagtagtggtcatgaatgtaaagtgaaacctct-------cagtgtggctattgtctttccttcggccacagtcagctcaacaaatatagggagagagtaggactatagttggattg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30011771 677 + 173848474 tgaccttcgatgaaaggt-ttccagtgcagaaaccttgttggagccaacccaaaagagaat-----------------------tcaaggacttggatggtagctagggggaagtgaagtcaagagaagattattttctgatgagtga-----aatcgaagtatgtttatgcattgatggggatggtccactggaaggacaaattatattacaggaaaga--g-gggaaagattagagtaatgtccctgaataagtggaaagggatggaatatagtgg------------------------gcaagtgggggtactggcatcagacagatgcaaaatag--tatattcctagcagtatcagaagaaaaggtggagtcctatatgcgagcacagatgcaagtaggtgaacagatgtgttagtaa---------gaacttctctttttattgctttacattt-tttcagt-aaaaaatgaagtaaaatttttatctgagaaagatgatattatttgagaga---gag---gagtactggggatttgaggagagaccagaaagtatgcatgagttacgtaggagagggca-aagtgagtggactaggaaaata-----tgatta-tcaatgacattagccccttcctcttaaagtagtggtcatgaatgtaaagtgaaacctct-------cagtgtggctattggctttccttcagccacagtcagctgaacaaatatagggagagagtaggattatagttggattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5815223 676 +   6154872 tgaccttcgatgaaaggt-ttccagtgcagaaaccttgttggagccaacccaaaagagaat-----------------------tcaaggacttggatggtagctagggggaagtgaagtcaagagaagattattttctgatgagtga-----aatcaaagtatgtttatgtattgatggggatggtccactggaaggacaaattacattacaggaaaga--g-gggaaagattagagtaatgtccctgaataagtggaaagggatggaatatagtgg------------------------gcaagtgggggtactggcatcagacagatgcaaaatag--tatattcctagcagtatcagaagaaaaggtggagtcctatatgtgagcacagatgcaagtaggtgaacagatgggttagtaa---------gaacttctctttttattgctttaca-tt-tttcagt-aaaaaatgaagtaaaatttttatctgagaaagatgatattatttgagaga---gag---gagtactggggatttgaggagagaccagaaagtatgcatgagttacgtaggagagggga-aagtgagtggactaggaaaata-----tgatta-tcaatgacattagccccttcctcttaaagtagtggtcatgaatataaagtgaaacctct-------cagtgtggctattggctttccttcagccacagtcagctgaacaaatataaggagagagtaggattatagttggattt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74541417 674 + 122973662 tggcctttgatgaaaggt-ttccagtgcagaagccttgttggagccaacccaaaagagaat-----------------------tcaaggacttggatggtagctagggggaagtgaagtcaagagaagattattttttgatgagtga-----aatcaaaatatgtttatgtattgatggggatggtccactggaaggacaaattatattacaggaaaga--g-gggaaagactagagtaatgtccctgaataagtggaaagggatggaatatagtgg------------------------gcaagtgggggtactggcatcagacagatgcaaaatag--tatattcctagcagtatcagaagaaaaggtggagtcctctgtgtgagcacagatgcaagcaggtgaacagatgggttagtaa---------gaacttctcttttgattgctttacattt-tttcagt-aaaaaatgaagtaaaatttttatctgagaaa---gatattatttgagaga---gag---gagtattggggatttgagcacagaccaggaagtatgcatgagttacataggagaggaga-aagtgagtggactagggaaata-----tgatta-tccatgacattaaccccttcctcttaaagtagtggtcatgaatgtaaagtgaaacctct-------cagtgtggctatgggcttttcttcagccacagtcagctgaacaaatacagggagagagtaggattatagctggattt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30006771 676 + 172585720 tgacctttgatgaaagat-ttccagtgcagaagccttgttggagccaacccaaaagagaat-----------------------tcaaggacctgggtggtagctagggggaagagaagtcaagagaagattattttttaatgagtga-----aataaaagtatgtttatgtatggatagggatggtccactggaaggacaaattttactacaggaaaaa--g-ggtaaagactagagtaatatccctgaataagtggaaagggatggaatatagtgg------------------------gcaagtggaggtactgacatcagacagatgcaaaatag--tataatcctaacagtatcagaagaaaatgtagagtcccatatgtgagcacagatgcaagtaggtgaacagatgggttggtaa---------gaacttctcttttgattgctttacattt-tttcagt--aaaaatgaagtaaaatttttatctgagaaagatgatattatttgagaga---gag---gagtattggggatttaaggagagaccagaaagtatgcatgagttacataggagagggga-aagtgagtggactagggaaata-----cgatta-tccatgacattagccccttcctcttaaagtaatggtcatgaatgtaaaatgaaacctct-------cagcatggctatgggcttttcttcagccacagtcagctgaacaaatatagggagagagtaggattatagttggattt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29670664 676 - 170955103 tgaccttcgatgaaagat-ttccagtgcagaagccttgttggagccaacccaaaagagaat-----------------------tcaaggacctgggtggtagctagggggaagagaagtcaagagaagattattttttaatgagtga-----aatcaaagtatgtttatgtatggatagggatggtccactggaaggacaaattttactacaggaaaaa--g-ggtaaagactagagtaatatccctgaataagtggaaagggatggaatatagtgg------------------------gcaagtggaggtactgacatcagacagatgcaaaatag--tataatcctaacagtatcagaagaaaatgtagagtcccatatgtgagcacagatgcaagtaggtgaacagatgggttggtaa---------gaacttctcttttgattgctttacattt-tttcagt--aaaaatgaagtaaaatttttatctgagaaagatgatattatttgagaga---gag---gagtattggggatttaaggagagaccagaaagtatgcatgagttacataggagagggga-aagtgagtggactagggaaata-----cgatta-tccatgacattagccccttcctcttaaagtaatggtcatgaatgtaaaatgaaacctct-------cagcgtggctatgggcttttcttcagccacagtcagctgaacaaatatagggagagagtaggattatagttggattt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2716852 676 -   2996164 tgaccttcgatgaaagat-ttccagtgcagaagccttgttggagccaacccaaaagagaat-----------------------tcaaggacctgggtggtagctagggggaagagaagtcaagagaagattattttttaatgagtga-----aatcaaagtatgtttatgtatggatagggatggtccactggaaggacaaattttactacaggaaaaa--g-ggtaaagactagagtaatatccctgaataagtggaaagggatggaatatagtgg------------------------gcaagtggaggtactgacatcagacagatgcaaaatag--tataatcctaacagtatcagaagaaaatgtagagtcccatatgtgagcacagatgcaagtaggtgaacagatgggttggtaa---------gaacttctcttttgattgctttacattt-tttcagt--aaaaatgaagtaaaatttttatctgagaaagatgatattatttgagaga---gag---gagtattggggatttaaggagagaccagaaagtatgcatgagttacataggagagggga-aagtgagtggactagggaaata-----cgatta-tccatgacattagcgccttcctcttaaagtaatggtcatgaatgtaaaatgaaacctct-------cagcgtggctatgggcttttcttcagccacagtcagctgaacaaatatagggagagagtaggattatagttggattt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     466134 676 +    766320 tgaccttcgatgaaagat-ttccagtgcagaagccttgttggagccaacccaaaagagaat-----------------------tcaaggacctggatggtagctagggggaagtgaagtcaagagaagattattttttaatgagtga-----aatcaaagtatgtttatgtatggatagggatggtccactggaaggacaaattttactacaggaaaaa--g-ggtaaagcctagagtaatatccctgaataagtggaaagggatggaatacagtgg------------------------gcaagtggaggtactgacatcagacagatgcaaaatag--tatattcctagcagtatcagaagaaaatgtagagtcctatatgtgagcacagatgcaagtaggtgaacagatgggttggtag---------gaacttctcttttgattgttttacattt-tttcagt--aaaaatgaagtaaaattttcatctgtgaaagatgatattatttgagaga---gag---gagtattggggatttaaggagagaccagaaagtatggattagttacataggagagggga-aagtgagtggactagggaaata-----tgatta-tccatgacgttagccccttcctcttaaagtaatggtcatgaatgtaaagtgaaacctct-------cagcgtggctatgggcttttcttcagccacagtcagctgaacaaatatagggagagagtaggattatagttggatgt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28924274 676 -  71996105 tgaccttcgatgaaagat-ttccagtgcagaagccttgttggagccaacccaaaagagaat-----------------------tcaaggacctggatggtagctagggggaagagaagtcaagagaagattattttttaatgagtga-----aatcgaagtatgtttatgtatgggtagggatggtccagtggaagggcaaattatactacaggaaaaa--g-gggaaagactagagtaatatccctgaataagtggaaagggatggaatatagtgg------------------------gcaagtggaggtactgacatcagacagatgcaaaatag--tatattcctaacagtatcagaagaaaatgtagagtcccatatgtgagcacagatgcaagtaggtgaacagatgggttggtaa---------gaacttctcttttgattgctttacattt-tttcagt--aaaaatgaagtaaaatttttatctgagaaagatgatattatttgagaga---gag---gagtattggggatttaaggagagaccagaaagtatgcatgagttacataggagagggga-aagtgagtggactagggaaata-----cgatta-tccatgacattagccccttcctcttaaagtaatggtcatgaatgtaaaatgaaacctct-------cagcgtggctatgggcttttcttctgccacagtcagctgaacaaatatagggagagagtaggattatagttggattt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     100038 676 +    290775 tgaccttcgatgaaagat-ttccagtgcagaagccttgttggagccaacccaaaagagaat-----------------------tcaaggacctggatggtagctagggggaagtgaagtcaagagaagattattttttaatgagaga-----aatcaaagtatgtttatgtatggatagggatggtccactggaaggacaaattttactacaggaaaaa--g-ggtaaagactagagtaatatccctgaataagtggaaaggaatggaatatagtgg------------------------gcaagtggaggtactgacatcagacagatgcaaaatag--tagattcctagcagtatcagaagaaaatgtagagtcctatatgtgagcacagatgcaagtaggtgaacagatgggttggtag---------gaacttctcttttgattgttttacattt-tttcagt--aaaaatgaagtaaaattttcatctgtgaaagatgatattatttgagaga---gag---gagtattggggatttaaggagagaccagaaagtatggattagttacataggagagggga-aagtgagtggactagggaaata-----tgatta-tccatgacgttagccccttcctcttaaagtaatggtcatgaatgtaaagtgaaacctct-------cagcgtggctatgggcttttcttcagccacagtcagctgaacaaatatagggagagagtaggattatagttggatgt
i manLeu1.NW_012099233v1   C 0 C 0
s saiBol1.JH378357           146513 722 -    242197 tgacctttgatgaaagat-ttccggtgcagaagccttgttggagccaactcaaaagagaatgggagtagagaagtggtgcaaaagtaaggacttggatggtagctagggggaggtgaaatcaag---agattattttttaatgaggga-----aatccaagtatgtttaggtattgatggggatggtccactggaagggcaaatgatgttacaggaaaga-gg-gggaaaaactagcgtgatatccctgaataagtggaaagg-atggaatatggagggcaagtggagatactggcatcagagcaagtggagatactggcatcagatagatacaaaatagtctctattcctagtggcgtcagaaaaaaatgt--agtcctatatgtgagcacagatccaagtaggtgaacagatgggttgataa---------cagcttctcttttgattgctttacattt-tttcagtaaaaaaatgaagtaaaatttttatctgagaag---gatattatttgagaga---gaggaggaggactggagatttgaggagagaccagaaagtgtgcatgagttatgtaggagaggaga-aagtgagtggactagggaaata-----tgattg-tccatgacattagccccttcccctaatagtagtagtcatgaatgtaaagtgaagcctct-------cagtgtggctatgggcttttcttcagccacagtcagctgaacaaatacagggagagagtaggattacagttggattt
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     148962 698 -   1771730 tgacctttgatgaaagat-ttccagtgcagaagccttgttggagccaactcaaaagagaatgggagtagagaagtggtgcaaaagtaagtacttggatggtagctagggggaggtgaaagcaag---agataattttttaatgaggga-----agtccaagtatgtttatgtattgatggggatggcccactggatgggcaaatgatgttacacgaaagaggg-gggaaagactggcgtaatatccctgaataagtggaaagg-atgaaatatggtgg------------------------gcaagtggagatactgacatcagacagatgcaaaacagtctctattcctggcggtatcagaaaaaaaggc--agtcctatatgtgagcacagactcaagtaggtgaacagatgggttgataa---------cagcttctcttttgattgctttacattt-tttcagt-aaaaaatgaagtaaattttttatctgagaaa---gatattacttgagaga---gaggaagagaactggagatttgaggagagaccagaaagtgtgcatgagttatgtaggagaggaga-aagtgagcggactagggaaata-----tgattg-tccatggcattagccccttcccctaatagtagtagtcaggaatgtaaagtgaagcctct-------cagtgtggctataggcttttcttcagccacagtcagctgaacaaatatagtgagagagcagaattatagttggattt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     207829 694 -    457564 tgatctttgatgaaagat-ttccagtccagaagccttgttggcgccaactcaaaagagaatgggaagagagaagtggtgcaaaagtaaggacttggatggtagctagggggaggtgaaatcaaa---agactattttttaatgaggga-----aatcc-agtatgtttatgtattgat-gggatggtccactggaagggcaaatgatgttacaggaaaga-gg-gggaaagactagagtaatatccctgaataagtggaaagg-atggaatgtggtgg------------------------gcaagtggagatactggcatcagacagatgcaaaacagtctctattcctagcagcatcagaaaaaaagtt--agtcctatatgcgaggacagatccaagtaggtgaacagataggttgataa---------caacttctcttttgatcgctttacgttt-tttcagt-aaaaaatg-agtaaaatttttatcagagaaa---gatattatttgagaga---gaggaggaggactggagatttgaggaaagaccagaaagtgtgcatgagttatgtaggagaggaga-aagtgagtggactagggaaata-----tgatta-tccatgacattatccccttcccctaatagtagtagtcatgaatgtaaagtgaagcctct-------cagtgtggctatgggcttttcttcagccacagtcagctgaacaaatatagggagagagtagaattatagttggattt
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            27669 721 +  18854210 tgaactttgataaaaattgttccagtgccaaagcctctatagagtcagttcaaaggagagtgaaaggagagaagtgctatagaattacaaaccagagt--------gggagaagtggaataaagagacgatgatttttgaatgaaagaaatataataaaagcaggtttatatgttcatgggaatgatccacgagaagaccaaacaatactacatgagaga--gcaagaaatactagagtaatatccttgcataagtggtaagaaacag-gtatactgg------------------------acaagtggagggatttacaccaggcagaagc---acag--tttactacaagcaatatcagaagaaaaggcagaatactatttatgagcacagatacaagtaggtgagcagatagtttggtaagagtttattgaacttctctcctgatttctgtacattcatttcaat-gaaatgcggagtaaaattattacctgagaatgagggtattatttgagatacacaag---gagtatcagggatttgaggagcgaccaggaagggtgtactagatacgaaggagaatggacaagtgagtagactgggaaaatataatctgattactgtatggcattatgcctcaccctttaaagttatggtcatg-atgtaaagtgcagcctcctataatataaaatggttatgggcctttctccagccacaataaaccagacaagcgtagaaagagagcaggattagagttggattt
i otoGar3.GL873550         I 306 I 282
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I

a score=485851.000000
s hg38.chr6_GL000254v2_alt   815020 64 +   4827813 aaataggaaagcaatttagctgaaagagtgtaacaagtgaaaagggcaggaacattgat-gtatg
s panTro5.chr6             29777838 64 + 175400573 aaataggaaagcaatttagctgaaagagtgtaacaagtgaaaagggcaggaacattgag-gtatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30012448 64 + 173848474 aaataggaaagcaatttagctgaaagagtgtaacaagtgaaaagggcaggaacattgag-gtatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5815899 64 +   6154872 aaataggaaagcaatttagctgaaagagtgtaacaagtgaaaagggcaggaacattgag-gtatg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74542091 65 + 122973662 aaataggaaagcaatttagccaaaagagtctaacaagtgaaaagggaaggaacattgagagtatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30007447 65 + 172585720 aaataggaaagcaacttagccataagagtctaacaagtgaaaagtgcaggaacattgagagtatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29671340 65 - 170955103 aaataggaaagcaacttagccataagagtctaacaagtgaaaagtgcaggaacattgagagtatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2717528 65 -   2996164 aaataggaaagcaacttagccataagagtctaacaagtgaaaagtgcaggaacattgagagtatg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     466810 65 +    766320 aaataggaaagcaacttagccataagagtccaacaagtgaaaagtgcaggaacattgagagtatg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28924950 65 -  71996105 aaacaggaaagcaacttagccataagagtctaacaagtgaaaagtgcaggaacattgagagtatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     100714 65 +    290775 aaataggaaagcaacttagccataagagtctaacaagtgaaaagtgcaggaacattgagagtatg
i manLeu1.NW_012099233v1   C 0 C 0
s saiBol1.JH378357           147235 64 -    242197 aaatgggatagtagtttaga-gaaagagtctaacaagtgaaaagggcaggaacattgagagtatg
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     149660 64 -   1771730 aaatgggagagcagtttaga-gaaagagtctaacaagtgaaaaggtcaggaacattgagagtatg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     208523 64 -    457564 aaatgggagagcagtttagc-aaaagagtctaacaagtgaaaagggcaggaacattgagagcatg
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            28672 65 +  18854210 aaatagcagagagaattagtcaaaagagtataataagttaaaaaggcaggaactgtgaaagtatg
i otoGar3.GL873550         I 282 C 0
e mm10.chr17               57792034 6618 -  94987271 T
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I

a score=2137061.000000
s hg38.chr6_GL000254v2_alt   815084 277 +   4827813 caaaggagta---atagtgattg-acgagacagtctaagcttga----tagagaactgaa-gatacaaggggcgtgaggggccacgatgaaTTTGCGGACCTCTCACTgaggaagaaactgagaggaaag--tatagaaagataatctatgaggatactgaattcaccaagaatcatcac-agt-------actggagagagtgagaggggatcagggacaaaaatcttcaaggacgaaggaggagcaaagg----gaaagagaatgatgagagccacaagtggggaggtggactttgga
s panTro5.chr6             29777902 277 + 175400573 caaaggagta---atagtgattg-acgagacagtctaagcttga----tagagaactgaa-gatacaaggggcgtgaggggccacgatgaaTTTGCGGACCTCTCACTgaggaagaaactgagaggaaag--tatagaaagataatctatgaggatactgaattcaccaagaatcatcac-agt-------actggagagagtgagaggggatcagggacaaaaatcttcaaggatgaaggaggagcaaagg----gaaagagaatgatgacagccacaagtggggaggtgggctttgga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30012512 277 + 173848474 caaaggagta---atagtgattg-acgagacagtctaagcttga----tagagaactgaa-gatacaaggggcatgaggggccacgatgaaTTTGCAGACCTCTCACTgaggaagaaactgagaggaaag--tatagaaagataatctatgaggatactgaattcaccaagaatcatcac-agt-------actggagagagtgagaggggatcagggacaaaaatcttcaaggacgaaggaggagcaaagg----gaaagagaatgatgacagccacaagtggggaggtgggctttgga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5815963 277 +   6154872 caaaggagta---atagtgattg-acgagacagtctaagcttga----cagagaactgaa-gatacaaggggcatgaggggccacaatgaaTTTGCAGACCTCTCACTgaggaagaaactgagaggaaag--tatagaaagataatctatgaggatactgaattcaccaagaatcatcac-agt-------actggagagagtgagaggggatcagggacaaaaatcttcaaggacgaaggaggagcaaagg----gaaagagaatgatgacagccacaagtggggaggtgggctttgga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74542156 277 + 122973662 caaaggagta---atagtgattg-accagacagtctaagcttga----cagagaagtgaa-gatacaaggggtgtgaggggccacgatgaaTTCACAGACCTCTCACTgaggaagaaactgagaggaaag--tgtagaaagataatctatgaggatactgaattcaccaagaatcatcac-agt-------actggagagagtgagaagggatcaggcacaaaaatcttcaaggacgaaggaggagcaaagg----gaaagagaatgaggacagccacaagcggggaggtgggctttgga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30007512 276 + 172585720 caaaggagta---atagtgattg-accagacagtctaagcttga----cagagaagtgaa-gatacaagggacatgaggggccatgaTGAATTTGCAGACCTCTCACTgaggaagaaactgacaggagag--gatagaaagataatctatgaggatactgaattcaccaagaatcatcac-agt-------actggagagagtgagaggggatcagggacaaaaatcttcaaggacgaaggaggagcacagg----gaacgagaatggtgacagcc-caagccgggaagcgggctttgga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29671405 276 - 170955103 caaaggagta---atagtgattg-accagacagtctaagcttga----cagagaagtgaa-gatacaagggacatgaggggccatgaTGAATTTGCAGACCTCTCACTgaggaagaaactgagaggagag--gatagaaagataatctatgaggatactgaattcaccaagaatcatcac-agt-------actggagagagtgagaggggatcagggacaaaaatcttcaaggacgaaggaggagcacagg----gaacgagaatggtgacagcc-caagccgggaagcgggctttgga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2717593 276 -   2996164 caaaggagta---atagtgattg-accagacagtctaagcttga----cagagaagtgaa-gatacaagggacatgaggggccatgaTGAATTTGCAGACCTCTCACTgaggaagaaactgagaggagag--gatagaaagataatctatgaggatactgaattcaccaagaatcatcac-agt-------actggagagagtgagaggggatcagggacaaaaatcttcaaggacgaaggaggagcacagg----gaacgagaatggtgacagcc-caagccgggaagcgggctttgga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     466875 277 +    766320 caaaggagta---atagtgattg-accagacagtctaagcttga----cagagaagtgaa-gatacaagggatgtgaggggccacgatgaaTTTGCAGACCTCTCACTgaggaagaaactgaggggagag--tatagaaagataatctatgaggatactgaattcaccaagaatcatcac-agt-------actggagagagtgagaggggatcagggataaaaatcttcaaggacgaaggaggagcacagg----gaacgagaatggtgacagccacaagcggggaggcgggctttgga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28925015 276 -  71996105 caaaggagta---atagtgattg-accagacagtctaagcttga----cagagaagtgaa-gatacaagggacatgaggggccatgaTGAATTTGCAGACCTCTCACTgaggaagaaactgagaggagag--gatagaaagataatctatgaggatactgaattcaccaagaatcatcac-agt-------actggagagagtgagaggagatcagggacaaaaatcttcaaggacgaaggaggagcacagg----gaacgagaatggtgacagcc-caagccgggaggcgggctttgga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     100779 277 +    290775 caaaggagta---atagtgattg-accagacagtctaaacttga----cagagaagtgaa-gatacaagggatgtgaggggccacgatgaaTTTGCAGACCTCTCACTgaggaagaaactgagaggagag--tatagaaagataatctatgaggatactgaattcaccaagaatcatcac-agt-------attggagagagtgagaggggatcagggataaaaatcttcaaggacgaaggaggagcacagg----gaacgagaatggtgacagccacaagcggggaggcgggctttgga
i manLeu1.NW_012099233v1   C 0 C 0
s saiBol1.JH378357           147299 285 -    242197 caaaggagtaattataatgattg-atcagacagtctacgcttgg----taaagaagtgaa-gattcaaggggtgcaaggggccatgaTGAATTTGCAGACCTCTCACTGAGAaaggaactgaaaggagagattatggaaggataatctatgtggatactgaattcaccaagaatgatcac-agttg-taggactggagagagtgagaggggatcagggaaaaagatctgcaaggacaaa-gaagagtgaagg----g--agagaatgatgacggtcacaagcaggaaggcgggctttggc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     149724 289 -   1771730 caaaggagtaattataatgattg-accagacagtctaagcttgg----tagagaagtgaa-gattcaagaggtgcaaggggccatgaTGAATTTGCAGACCTCTCACTGAGAaaggaactgaaaggagagattgtggaaggataatctatgtggatactgaattcaccaagaattatcac-agttgttaggactggagagagtgagatgggatcagggacaaagatctgcaaggacaaaggaagagtgaagg----gaaagagaatgatgacagtcacaagcaggaaggcaggctttggc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     208587 280 -    457564 caaaggagtaattataatgattg-accagacagtctaagcttgg----tagagaagtgaa-ga---------tgcaagggACCATGATGAATTTGCAGACCTCTCACTGAGAaaggaactgaaaggagagattatggaaggataatctatgtggatactgaattcatcaagaattatcacaagttg-taggactggagagagtgagaggggatcagggacaaagatctgcaaggacaaaggaagagtgaagt----ggaagagaatgatgacagtcacaagcaggaaggcaggctttggc
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            28737 260 +  18854210 taaaggagta---attataat-----------gactgagattaa----tggagagaagaatgaaaacaaggaggtgagagacagtgaaaaaatTTCAAGCCCTAAAGTgaggaaggagctgagaggagaa-----agtatgtgaatctatg-------tgaattcactaagaattatgac-agg-agtaggacgggagagagtcagagtgaaccagggacaaaaatcttcaa-gacataggggaagtgaaagaatagaaggaaaagaaggatggcaacaaggagagggttgga-------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57785416 259 -  94987271 cAAACAAGCA---ATTATAATTGCAGAAAACAACCTGAACCAGATATCCAGAGAGATGAA-GACATGAGGTAGGTGAGGGACTACAGAAAATTTCCAGA----TCGCTGAAGAAGAAAATGGAAGGAAAAGGGGCAGAGTTTTAATTTTTGTGGATAGTT-ACTCACCAAAATGTATAGC-ATG-------AGTAG--------AAAATGGATCACACACAAA-ATACGCAAGAATAAAAAGGAACTGAAGG----GACTTAGGGG-----------CAAACAGGACAGGTGGCAGGTGA
i mm10.chr17               T 6618 C 0
e proCoq1.NW_012152574v1     562336 62472 +    730504 T
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I

a score=483816.000000
s hg38.chr6_GL000254v2_alt   815361 49 +   4827813 gcaaagctgatgacataacagtcaaagctACATTCAAAACTAATAATGA
s panTro5.chr6             29778179 49 + 175400573 gcaaagctgatgacataacagtcaaagctACATTCAAAACTAAGAATGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30012789 49 + 173848474 gcaaagctgatgacataacagtcaaagctACATTCAAAACTAAGAATGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5816240 49 +   6154872 gcaaagctgatgacataacagtcaaagctACATTCAAAACTAAGAATGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74542433 49 + 122973662 gcaaagctgatgacataacagtcaaagctACATTCAAAACTGAGAATGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30007788 49 + 172585720 gcaaagctgatgacacaacagtcaaagctACACTCAAAACTGAAAATGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29671681 49 - 170955103 gcaaagctgatgacacaacagtcaaagctACACTCAAAACTGAAAATGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2717869 49 -   2996164 gcaaagctgatgacacaacagtcaaagctACACTCAAAACTGAAAATGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     467152 49 +    766320 gcaaagctgatgacacaacagtcaaagctACATTCAAAACTGAGAATGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28925291 49 -  71996105 gcaaagctgatgacacaacagtcaaagctACACTCAAAACTGAAAATGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     101056 49 +    290775 gcaaagctgatgacacaacagtcaaagctACATTCAAAACTGAGAATGA
i manLeu1.NW_012099233v1   C 0 C 0
s saiBol1.JH378357           147584 49 -    242197 acaaagctgatgacataacagtgaaagcGACATTCAAAACTGAGAATGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     150013 49 -   1771730 gcaaagctgatgacataacagtgaaagcCACATTCAAAACTGAAAATGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     208867 49 -    457564 gcgaagctgatgacataacagtcaaagctACATTCGAAACTGAGAATGA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     499864 49 +    730504 gcaaagccgaagacataagagtcaaagctgCTTGCAAAACTGAGGATGA
i proCoq1.NW_012152574v1   T 62472 C 0
s otoGar3.GL873550            28997 49 +  18854210 gcaaagctgaggacacaagagtcaaagctgCACGCAAAACTGAGGAGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57785675 43 -  94987271 TAAAAGCCAATGGCATG--AGCCAAAGT----CTCATGTCTCATGATGA
i mm10.chr17               C 0 I 91
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I

a score=631781.000000
s hg38.chr6_GL000254v2_alt   815410 74 +   4827813 CTtcaacaaatctacaaaattcctgac--agaaa-gggttattttccttgttttacagatgatgacattgagagtca
s panTro5.chr6             29778228 74 + 175400573 CTtcaacaaatctacaaaattcctgac--agaaa-gggttattttccttgttttacagatgatgacattgagagtca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30012838 74 + 173848474 CTtcaacaaatctacaaaattcctgac--agaaa-gggttattttccttgttttacagatgatgacattgagagtca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5816289 74 +   6154872 CTTCAACAaatctacaaaattcctgac--agaaa-gggttattttccttgttttacagatgatgacattgagagtca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74542482 68 + 122973662 CTTCAACAAATCTACAAAATTCCTGAC--AGAAA-GGGTTATTTTCCTTGTTTCA------ATGACATTGAGAGTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30007837 74 + 172585720 CTtcaacaaatctacaaaattcctgac--agaaa-cagttattttccttgttttacagacgatgacactgagaatca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29671730 74 - 170955103 CTTCAACAAATCTACAAAATTCCTGAC--AGAAA-CAGttattttccttgttttacagacgatgacactgagaatca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2717918 74 -   2996164 CTtcaacaaatctacaaaattcctgac--agaaa-gagttattttccttgttttacagacgatgacactgagaatca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     467201 74 +    766320 CTtcaacaaatctacaaaattcctgac--agaaa-cgtttattttccttgttttacagacgatgacactgagaatca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28925340 74 -  71996105 CTtcaacaaatctacaaaattcctgac--agaaa-cagttattttccttgttttacagacgatgacactgagaatca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     101105 74 +    290775 CTtcaacaaatctacaaaattcctgac--agaaa-cgtttattttccttgttttacagatgatgacactgagaatca
i manLeu1.NW_012099233v1   C 0 C 0
s saiBol1.JH378357           147633 76 -    242197 CTTCAAGAAATCTACAAAATTTCTGACAAAAAAA-AGGtttttttccttgttttacagatgatgacattgagaatca
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     150062 74 -   1771730 CTTCAACAAATCGACAAAA-TTCTGAC-AAAAAA-AGGttattttccttgttttacagatgatgacattgagaatca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     208916 74 -    457564 CTTCAACAAATCTACAAAATTTCTGAC--AAAAA-AGattattttccttgttttacagatgatgacattgagaatca
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     499913 75 +    730504 CTTCAGCAAATCCACGACATCTCTAAC--AAAAAAGGGCTGTTTTCCATTTGTTACAGATGGTGCTACTGAGAATCA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            29046 74 +  18854210 ATTCCACAAATCTGCAGCATCTCCACC--AGAAAGGGGTTG-TTCCCATGATTTACAGAAGGTGATGCTGAGAATCA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57785718 91 -  94987271 I
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I

a score=4811269.000000
s hg38.chr6_GL000254v2_alt   815484 493 +   4827813 ctgaagttaaacaattagcttaag--gtcactc------catcagAGAATGAAATTC------------TAAACCAGTTCCAATTGAAT------AGTAGAAATATTAATGAGAGGGAATTACGCTGCCTTTGGCCTTCATACACTGCCAGAGGCACACTACCCTAAAGGGACTTTCCCTCCAGAATTTCCTCTTCCCCACTCTTGGGGACT-CCTCTCCGGACACCTTCATGCAAAGTACTAATGATAGGAGTGGGAC------ATCTATTCCCCAGAGCTCCATC--CTCTCTTCTAAATAACAGGGAACGTTGAGTCCCCTGTTTTTTCTCTAGTGAGAGCACTCATCAGCATGCTTCCTCCT---CTCTAAC---TGTGTCCTTTAGATCCAGGAGGGATA--TTTGC--TACCACCACCAGCTAATGCTGATTTGCTACCAGCACAAGGCCCAGGTCCTTGTCTGGTCTGTACCCCATTACAAGGTTCTCCAGGAAC-AGACATCACCACCTCTGCCTAGATCCTGAAATTTCA
s panTro5.chr6             29778302 496 + 175400573 ctgaagttaaacaattagcttaag--gtcactc------catcagAGAATGAAATTC------------TAAACCAGTTCCAATTGAAT------AGTAGAAATGTTAATGAGAGGGAATTACGCTGCCTTTGGCCTTCATACGCTGCCAGAGACACACTACCCTAAAGGGACTTTCCCTCCAGAATTTCCTCTTCCCCACTCTTGGGGACT-CCTCTCCGGACACCTTCATGCAAAGTACTAATGATAGGAGTGGGAC------ATCTATTCCCCAGAGCTCCATC--CTCTCTTCTAAATAACAGGGAACGTTGAGTCCCCTGTTTTTTCTCTAGTGAGATCACTCATCAGCATGCTTCCTCCTTGTCTCTAAC---TGTGTCCTTTAGATCCAGGAGGGATA--TTTGC--TACCACCACCAGCTACTGCTGATTTGCTACCAGCACAAGGCCCAGGTCCTTGTCTGGTCTGTACCCCATTACAAGGTTCTCCAGGAAC-AGACATCACCACCTCTGCCTAGATCCTGAAATTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30012912 496 + 173848474 ctgaagttaaacaattagcttaag--gtcactc------catcagAGAATGAAATTC------------TAAACCAGTTCCAATTGAAT------AGTAGAAATGTTAATGAAAGGGAATTACGCTGCCTTTGGCCTTCATACACTGCCAGAGACACACTACCCTAAAGGGACTTTCCCTCCAGAATTTCCTCTTCCCCACTCTTGGGGACT-CCTCTCCGGACACCTTCATGCAAAGTACTAATGATAGGAGTGGGAC------ATCTATTCCCCAGAGCTCCATC--CTCTCTTCTAAATAACAGGGAACGTTGAGTCCCCTGTTTTTTCTCTAGTGAGATCACTCATCAGCATGCTTCCTCCTTCTCTCTAAC---TGTGTCCTTTAGATCCAGGAGGGATA--TTTGC--TACCACCACCAGCTAATGCTGATTTGCTACCAGCACAAGGCCCAGGTCCTTGTCTGGTCTGTACCCCATTACAAGGTTCTCCAGGAAC-AGACATCACCACCTCTGCCTAGATCCTGAAATTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5816363 492 +   6154872 ctgaagttaaacaattagcttaag--gtcattc------catcagagaatgaaattc------------taaaccagttccaactgaAT------AGTAGAAATGTTAATGAGAGGGAATTACGCTGCCTTTGGCCTTCATACACTGCCAGAGACACACTACCCTAAAGGGACTTTCCCTCCAGAATTTCCTCTTCCCCACTCTTGGGGACT-CCTCTCCGGACACCTTCATGCAAAGTACTAATGATAGGAGTGGGAC------ATCTATTCCCCAGAGCTCCATC--CTCTCTTCTAAATAACAGGGAACGTTGAGTCCCCTGTTTTTTCTCTAGTGAGAGCACTCATCAGCATGCTTCCTCCTTCTCT----C---TGTGTCCTTTAGATCCAGGAGGGATA--TTTGC--TACCACCTCCAGCTAATGCTGATTTGCTACCAGCACAAGGCCCAGGTCCTTGTCTGGTCTGTACCCCATTACAAGGTTCTCCAGGAAC-AGACATCACCACCTCTGCCTAGATCCTGAAATTTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74542550 496 + 122973662 CTGAAGTGAAACAATTAGCTTAAG--GTCACTC------CATCAGAGAATGAAATTC------------TAAACCAGTTCCAATTGAAT------AGTAGAAATGATAATGAGAGGGAATTATGCTGCCTTTGGCCTTCACACACTGCCAGAGATACACTACCCTAAAGGGACTTTCCCTCCAGAATTTCCTCTTCCCCACTCTTGGGGACT-CCTCTCCGGACATCTTCATGCAAAGTACTAATGATAGGAGTGGGAC------ATCTATTCCCCAGAGCTCCATC--CTCTCTTCTAAATAACAGGGAACATTGAGTCCCCTGTTTTTTCTCTAGTGAGACCACTCATCAGCATGATTCCTCCTTCTCTCTAAC---TGTGTCCTTTAGATCCAGGAGGGATA--TTTGC--TACCACCACCAGCTAATGCTAAATTGCTACCAGCACAAGGCCCAGGTCCTCGTCTGGTCTATACCCCATTACAAGGTTCTCCAGGAAC-AGACATCACCACCTCTGCCTAGATCCTGAAATTTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30007911 495 + 172585720 ctgaagttaaacaattagtttaag--gtcactc------catcagAGAACGAAATTC------------TAAACCAGTTCCAATTGAAT------AGTAGAAACGATAATGAGAGGGAATTGTGCTGCCTTTGGCCTTCATACACTGCCAGAGACACACTACCCTAAAGGGACTTTCCTTCCAGAATTTCCTCTTCCCCTCTCTTGAGGACT-CCTCTCCGGACACCTTCATGCAAAGTACTAATGATGGGAGTGGGAC------ATCGATTCCCCAGAGCTCCATC--CTTTCTTCTAAATAACAGGGAACGTTGATTCCCCTGTTTCTTCTCTAGTGAGAGCACTCATCAGCATGCTTCCTCCTTCTCTCTAAC---TGTGTCCTTTAGATCCAGGAGGGAT---TTTGC--TACCACCAGCAGCTAATGCTGATTTGCCACCAGCACAAGGCCCAGGTCCTTGTCTGGTCTGTACCCCATTACAAGGTTCTCCAGGAAC-AGACATCACCACCTCTGCCTAGATCCTGAAATTTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29671804 495 - 170955103 ctgaagttaaacaattagtttaag--gtcacTC------CATCAGAGAACGAAATTC------------TAAACCAGTTCCAATTGAAT------AGTAGAAACGATAATGAGAGGGAATTGTGCTGCCTTTGGCCTTCATACACTGCCAGAGACACACTACCCTAAAGGGACTTTCCCTCCAGAATTTCCTCTTCCCCTCTCTTGAGGACT-CCTCTCCGGACACCTTCATGCAAAGTACTAATGATGGGAGTGGGAC------ATCGATTCCCCAGAGCTCCATC--CTCTCTTCTAAATAACAGGGAACGTTGATTCCCCTGTTTCTTCTCTAGTGAGAGCACTCATCAGCATGCTTCCTCCTTCTCTCTAAC---TGTGTCCTTTAGATCCAGGAGGGAT---TTTGC--TACCACCAGCAGCTAATGCTGATTTGCCACCAGCACAAGGCCCAGGTCCTTGTCTGGTCTGTACCCCATTACAAGGTTCTCCAGGAAC-AGACATCACCACCTCTGCCTAGATCCTGAAATTTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2717992 476 -   2996164 ctgaagttaaacaattagtttaag--gtcactc------catcagAGAACGAAATTC------------TAAACCAGTTCCAATTGAAT------AGTAGAAACGATAATGAGAGGGAATTGTGCTGCCTTTGGCCTTCATACACTGCCAGAGACACACTACCCTAAAGGGACTTTCCCTCCAGAATTTCCTCTTCCCCTCTCTTGAGGACT-CCTCTCCGGACACCTTCATGCAAAGTACTAATGATGGGAGTGGGAC------ATCGATTCCCCAGAGCTCCATC--CTCTCTTCTAAATAACAGGGAACGTTGATT--CCTGTT-----------------AAACATCAGCATGCTTCCTCCTTCTCTCTAAC---TGTGTCCTTTAGATCCAGGAGGGAT---TTTGC--TACCACCAGCAGCTAATGCTGATTTGCCACCAGCACAAGGCCCAGGTCCTTGTCTGGTCTGTACCCCATTACAAGGTTCTCCAGGAAC-AGACATCACCACCTCTGCCTAGATCCTGAAATTTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     467275 495 +    766320 ctgaagttaaacaattagcttaag--gtcactc------catcagagaacgaaattc------------taaaccagTTCCAATTGAAT------AGTAGAAACGATAACGAGAGGGAATTGTGCTGCCTGTGGCCTTCATACACTGCCAGAGACACACTACCCTAAAGGGACTTTCCCTCCAGAATTTCCTCTTCCCCACTCTTGGGGACT-CCTCTCCGGACACCTTCATGCAAAGTACTAATGATGGGAGTGGGAC------ATCGATTCCCCAGAGCTCCATC--CTCTCTTCTAAATAACAGGGAACGTTGATTCCCCTGTTTCTTCTCTAGTGAGAGCACTCATCAGCATGCTTCCTCCTTCTCTCTAAC---TGTGTCCTTTAGATCCAGGAGGGAT---TTTGC--TACCACCACCAGCTAATGCTGATTTGCCACCAGCACAAGGCCCAGGTCCTTGTCTGGTCTGTACCCCATTACAAGGTTCTCCAGGAAC-AGACATCACCACCTCTGCCTAGATCCTGAAATTTCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28925414 495 -  71996105 ctgaagttaaacaattagcttaag--gtcactc------catcagAGAACGAAATTC------------TAAACCAGTTCCAGTTGAAT------AGTAGAAACGATAATGAGAGGGAATTGTGCTGCCTTTGGCCTTCATACACTGCCAGAGACACACTACCCTAAAGGGACTTTCCCTCCAGAATTTCCTCTTCCCCACTCTTGAGGACT-CCTCTCCGGACACCTTCATGCAAAGTACTAATGATGGGAGTGGGAC------ATCGATTCCCCAGAGCTCCATC--CTCTCTTCTAAATAACAGGGAACGTTGATTCCCCTGTTTCTTCTCTAGTGACAGCACTCATCAGCATGCTTCCTCCTTCTCTCTAAC---TGTGTCCTTTAGATCCAGGAGGGAT---TTTGC--TACCACCAGCAGCTAATGCTGATTTGCCACCAGCACAAGGCCCAGGTCCTTGTCTGGTCTGTACCCCATTACAAGGTTCTCCAGGAAC-AGACATCACCACCTGTGCCTAGATCCTGAAATTTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     101179 495 +    290775 ctgaagttaaacaattagcttaag--gtcactc------catcagAGAACGAAATTC------------TAAACCAGTTCCAATTGAAT------AGTAGAAACGATAACGAGAGGGAATTGTGCTGCCTGTGGCCTTCATACACTGCCAGAGACACACTACCCTAAAGGGACTTTCCCTCCAGAATTTCCTCTTCCCCACTCTTGGGGACT-CCTCTCCGGACACCTTCATGCAAAGTACTAATGATGGGAGTGGGAC------ATCGATTCCCCAGAGCTCCATC--CTCTCTTCTAAATAACAGGGAACGTTGATTCCCCTGTTTCTTCTCTAGTGAGAGCACTCATCAGCATGCTTCCTCCTTCTCTCTAAC---TGTGTCCTTTAGATCCAGGAGGGAT---TTTGC--TACCACCACCAGCTAATGCTGATTTGCCACCAGCACAAGGCCCAGGTCCTTGTCTGGTCTGTACCCCATTACAAGGTTCTCCAGGAAC-AGACATCACCACCTCTGCCTAGATCCTGAAATTTCA
i manLeu1.NW_012099233v1   C 0 C 0
s saiBol1.JH378357           147709 490 -    242197 ctgaagttaagcaattagcTAACTTCATCACTC------CATCAGAAAATGAAATTC------------TAAACCAGTTCCAATTTAAC------AGTAAAAATG---ATGAGAGGGAATTATGCTGCCCCTTGCCTTCATACACTGCCAGAGACACACTACCCTAAAGGGACTTTCCCTCCAGAATTTCCTCTTCCCCACTCTTGGGGATT-CCTCTCCAGACACCTTCATGCAAAGTACTAATCATGGGAGT--GAC------GTCAATTCCCCAGAGCTCCATC--CCTTCTTCTAAATAACAGGGAATGTTGATTGCCTTGTTTCTTCTCTAGTGAGGGCACTCATCAGCATGCTTCCTCCTTCTCTCTAACTGTTGTGTCCTTTAGATCCAGGAAGGATA--TTTGC--TACCAATACCAGCTAATGCTGATTTGCTACCAGTACAAAA-------CCTTGTCTTGTATATACCCCATTACAAGGTTCTCCAGGAACAAGACATCACCATCTCTGCCTAGATCTCAAAATTTCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     150136 493 -   1771730 ctgaagttaagcagttagcTAACTTCATCACTC------CATCAGAGAATGAAATTC------------TAAACCAGTTCCAATTTAAC------AGTAAAAATGAT-ATGAGAGGGAATTATGCTGCCTCTGGCCTTCATACACTACCAGAGACACACTACCCTAAAGGGACTTTCCCTCCAGAATTTCCTCTTTCCCACTCTTGGGGACT-CCTCTCCAGACACCTTCATGCAAAGTACTAATGATGGGAGTGGGAC------ATCAATTCCTCAGAGCTCCATC--CCTTCTTCTAAATAACAGGGAACGCTGATTGCCTTGTTTCTTCTCTAGTGAGAGCACTCATCAGCATGCTTCCTCCTTCTCTCTAACTGCTGTATCCTTTAGATCCAGGAAGGATA--TTTGC--TACCAACACCAGCTAATGCTGATTTGCTACCAGTACAAAG-------CTTTGTCTTGTATATACCCCATCACAAGGTTCTCCAGGAAC-AGACATCACCATCTCTGCCTAGATCTCAAAATTTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     208990 493 -    457564 ctgaagttaagcaattagcTAACTTCATCACTC------CATCAGAGAATGAAATTC------------TAAACCAGTTCCAATTTAAC------AGTAAAAATGATAATGAGAGGGAATTATGCTGCCTCTGGCCTTCATACACTGCCAGAGACGCATTACCCTAAAGGGACTTTCCCTCCAGAATTTCCTCTTCCCCACTCTTGGGGACT-CCTCTCCAGACACCTTCATGCAAAGTACTAATGATGGGAGTGGGAC------ATCGATTCCCCGGAGCTCCATC--CCTTCTTCTAAATAACAGGGAACATTGATTGCTTTGTTTCTTCTCTAGTGAGAGCACTCATCAGCATGCTTCCTCCTTCTCTCTAACTGCTGTGTCCTTTGGAT-CAGGAAGGATA--TTTGC--TACCAACACCAGCTGATGCTGATTTGCTACCAGTACAAAG-------CCTTGTCTTGTCTGTACCCCATTACAAGGCTCTCCAGGAAC-AGACATCATCATCTCTGCCTAGATCTCAAAATTTCA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     499988 499 +    730504 CTGAGGTTAAGCAGTCAGCTTA-G--GTCACTC------AATCAGAGAGTGAAATTC------------TAACTCAAG----ACTTAAG------AGCAGAAATGATAATGAGAGGAAATTATGGTGCCTCTGGCCTTCAGACACTGCCAGAGACACACTACCCCAAAGAGGCTTTTCCTCCAGAATTCCCCCTTCCTTGCCCTGGGGGACT-CCTCTCTGGACACCTCCAGGCAAGGTACTAATTATGGAAGTGGGACATATTAATAGATTCCCCAGAGCTCTGGC--CTCTCTTCTAAATAACAGGGAAAGTTAATTCCTCTGTTTCCTCTCTAGTGAGAGGACTCATCAACGTGCTTCCTCCTTTTCTTCAACCTCTATGCCCTTTAGATTCAGGAAGGACGTTTTTCT--TACCACCACCAGCTAATGCTGATTAGCTACCACCACAAGGCTCAGATCTTTGCCTTGTGTGTACCCCATTACAAGGCTTTCTGGGAAT-AGAT---ATCATTTCTGCCTAGATCTCCAAGTTTCA
i proCoq1.NW_012152574v1   C 0 I 26
s otoGar3.GL873550            29120 493 +  18854210 CTGAAGTTAAGCTGCTAGTTTA-G--GTCACTC------AATCAGAGAATGAAATCC------------TAAATCAATTAACACTTAAG------ACTAGAAATAATAAGGAGAGGGAAGTATGCTGCCCCTGGCCATCACACACTGCCCGAGGCACACTACTCTAAAGAGGCTTTCCCTCTAGAATTTCCCCTTCCTTACCCTGGGGGACT-CCTCTCTGGACACCTCCATACAAAGTACTAATTATGGGAGTGGAGC------ACAGACTTCCCAGAGCTCTGGC--CTCTCTTCTAAATAACAGAGAGAGTTAATCCCCCTGTTTCCTCTCTAGTGAGAAGACTCCTCAAAGTGCTTCCTCCTTTTCTCCAACTGCTATGCCCTTTAGGTACAAGAATGA----TTTGT--CAACA-CACCAACTAATGCTGATTTTCTGCCACCATAAGGCTCAGATCTGTGCCCTGTGTGTGGCCCATTACAAGGCTTTCTGACAAC-AGATATCATCATTTCTGCCAAGATTGCCAACTTG--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57785809 516 -  94987271 CTGAAGTATCTCCAATAGATGAAG--GCTGCTCTACAGACATCATGGCA-GAGATTTGCTGAGGGTTAGTAAGTCAGTC---AGTGAATGGGGAAAGTAGAAAGAACCATAATTGGAGAATATGCTGCCTATGGGCTCCACACCCTGCCAGAGACACCGTGCCCTGAAGGGATAGTCTTTCTAGGATTCCCCGCTCCAGTCCCTCAGGGAATGTCTCTCTGGACACCCTCATGGAAAGTACTAATTATGGGAGTGGGAC------AAAGATTCCCCAGAGCTCCACCCACGCTCTTCCAAGGAGCAGGGCAAGTAAATTCCTCTGTTTCCTCTCTAGTGAGAAGAGATGTCATTATTCTTCCTTTTTCTCTCTCTC---TCT-CCCATTAGATTTTAGAAAGGTA--TTTTCAGGGCCTTCACCAGCTAAGGTAAATTGGCTACCATCACAAGTCTCAAGCTTCTGTTCTGTGTGTGCCCC-TTACAGGACTGTCCAGTAAC-AG---CCTCCACCTTTGCTTCTGTATGCCCACTCCA
i mm10.chr17               I 91 C 0
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I

a score=183424.000000
s hg38.chr6_GL000254v2_alt   815977 24 +   4827813 CAAATGTAGGTTCTTTCTTACCCG---
s panTro5.chr6             29778798 24 + 175400573 CAAATGTAGGTTCTTTCTTACCCA---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30013408 24 + 173848474 CAAATGTAGGTTCTTTCTTACCCA---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5816855 24 +   6154872 CAAATGTAGGTTCTTTCTTACCCG---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74543046 24 + 122973662 CAAATGTAGGTTCTTTCTTACCCG---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30008406 24 + 172585720 CAAACATAGGTTCTTTCTTACCCG---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29672299 24 - 170955103 CAAACATAGGTTCTTTCTTACCAG---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2718468 24 -   2996164 CAAACATAGGTTCTTTCTTACCCG---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     467770 24 +    766320 CAAACATAGGTTCTTTCTTACCCG---
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28925909 24 -  71996105 CAAACATAGGTTCTTTCTTACCCG---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     101674 24 +    290775 CAAACATAGGTTCTTTCTTACCCG---
i manLeu1.NW_012099233v1   C 0 C 0
s saiBol1.JH378357           148199 24 -    242197 CAAACTTAAGTTCTTTCTTATCCA---
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     150629 24 -   1771730 CAAACTTAAGTTCTTTCTTATCCA---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     209483 24 -    457564 CAAACTTAAGTTCTTTCTTATCCA---
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            29613 24 +  18854210 CAGACTTAAGTACCTATTCCTCCA---
i otoGar3.GL873550         C 0 I 4
s mm10.chr17               57786325 27 -  94987271 CAAACTTATGCATCTTCCTTCCAAACA
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     500487 26 +    730504 I
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I

a score=1782903.000000
s hg38.chr6_GL000254v2_alt   816001 175 +   4827813 TTCTTTTTATTCCTCTATTTACAAGCACAATGACACCCACCCCTCGTCTTCTTCCTGAAATACCTGGCTCTGATCCCAGGCATCCATTCCAGAAATCAACACAGCTATGCAATTGCATCTTTTATTAAATACT-CCCAACT-CCATTTCAAATCCAGAGAATCCAGAGCAGGAGCAA
s panTro5.chr6             29778822 175 + 175400573 TTCTTTTTATTCCTCTGTTTACAAGCACAATGACACCCACCACTTGTCTTCTTCCTGAAATACCTGGCTCTGATCTCAGGCACCCATTCCAGAAATCAACACAGCTATGCAATTGCATCTTTTATTAAATACT-CCCAACT-CCATTTCAAATCCAGAGAATCCAGAGCAGGAGCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30013432 175 + 173848474 TTCTTTTTATTCCTCTGTTTACAAGCACAATGACACCCACCACTTGTCTTCTTCCTGAAATACCTGGCTCTGATCTCAGGCACCCATTCCAGAAATCAACACAGCTATGCAATTGCATCTTTTATTAAATACT-CCCAACT-CCATTTCAAATCCAGAGAATCCAGAGCAGGAGCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5816879 175 +   6154872 TTCTTTTTATTCCTCTATTTACAAGCACAATGACACCCACCCCTCGTCTTCTTCCTGAAATACCTGGCTCTGATCTCAGGCACCCATTCCAGAAATCAACACAGCTATGCAATTGCATCTTTTATTAAATACT-CCCAACT-CCATTTCAAATCCAGAGAATCCAGAGCAGGAGCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74543070 175 + 122973662 TTCTTTTTATTCCTCTATTTACAAGCACAATGACACCCACCCCTTTTCTTCTTCCTGAGATACCTGGCTCTGATCTTAGGCACCCATTCCAGAAATCAACACAGCTATGCAATTGCATCTTTTATTAAATCCT-CCCAACT-CCATTTCAAATCCAGAGAATCCAGAGCAGGAGCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30008430 176 + 172585720 TTCTTTTTATTCCTCTATTTACAAGCACGATGACACCCACCCCTTATCCTCTTCCTGAGATACCTGGCTCTGATCTCAGGCACCCATTCCAGAAATCAACATAGCCATGCAATTGTATCTTTTATTAAATCCT-CCCAACTGCCATTTCAAATCCAGATAATCCAGCCAAGGAGCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29672323 176 - 170955103 TTCTTTTTATTCCTCTATTTACAAGCACGATGACACCCACCCCTTATCCTCTTCCTGAGATACCTGGCTCTGATCTCAGGCACCCATTCCAGAAATCAACATAGCCATGCAATTGTATCTTTTATTAAATCCT-CCCAACTGCCATTTCAAATCCAGAGAATCCAGCGAAGGAGCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2718492 176 -   2996164 TTCTTTTTATTCCTCTATTTACAAGCACGATGACACCCACCCCTTATCCTCTTCCTGAGATACCTGGCTCTGATCTCAGGCACCCATTCCAGAAATCAACATAGCCATGCAATTGTATCTTTTATTAAATCCT-CCCAACTGCCATTTCAAATCCAGAGAATCCAGCCAAGGAGCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     467794 176 +    766320 TTCTTTTTATTCCTCTATTTACAAGCACGATGACACCCACCCCTTATCCTCTTCCTGAGATACCTGGCTCTGATCTCAGGCACCCATTCCAGAAATCAACATAGCCATGCAATTGTATCTTTTATTAAATCCT-CCCAACTGCCATTTCAAATCCAGAGAATCCAGAGAAGGAGCAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28925933 176 -  71996105 TTCTTTTTATTCCTCTATTTACAAGCACGATGACACCCACCCCTTATCCTCTTCCTGAGATACCTGGCTCTGATCTCAGGCACCCATTCCAGAAAGCAACACAGCCATGCAATTGCATCTTTTATTAAATCCT-CCCAACTGCCATTTCAAATCCAGAGAATTCAGAGCAGGAGCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     101698 176 +    290775 TTCTTTTTATTCCTTTATTTACAAGCACAATGACACCCACCCCTTATCCTCTTCCTGAGATACCTGGCTCTGATCTCAGGCACCCATTCCAGAAATCAACATAGCCATGCAATTGTATCTTTTATTAAATCCT-CCCAACTGCCATTTCAAATCCAGAGAATCCAGAGAAGGAGCAA
i manLeu1.NW_012099233v1   C 0 C 0
s saiBol1.JH378357           148223 176 -    242197 TTCTTTTTATTCCTCTACTGACAAGCACAATGACATCCACCCCCTGTCCTTTTCCTGAGATAGCTGGCTTTGATCTCAGGCACCCATTCCAGAAATTAACACAGGCACACAATTACATCTTTTATTAAATCCT-CCCAACTGCCATTTCAAATCCAGAGAATCCAGAGCAGGAGCAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     150653 176 -   1771730 TTCTTTTTATTCCTCTATTGACAAACACAATGACATCCACCCCCTGTCTTTGTCCTGAGAATCCTGGCTTTGATCTCAGGCACTCATTCCAGAAATTAACACAGGCACACAATTGCATCTTTTATTAAATCCT-CCCAACTGCCATTTCAAATCCAGAGAACCCAGAGCAGGAGCAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     209507 176 -    457564 TTCTTTTTATTCCTCTATTGACAAGCACAATAACACCCACCCCCTGTCTTTTTCCTGAGATACCTGGCTTTGATCTCAGGAACCCATTCCAGAAATTAACACAGGCATGCAATTGCATCTTTTATTAAGTCCT-CCCAACTGCCATTTCAAATCCAGAGAATCCAGAGCAGGAGCAA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     500513 174 +    730504 TTCTATTTATTCCTCTGTTGACAAGCAAGATGGCATC--CACCCTGTCTTCTTCCTGAGGTACCTGGCTCTGATCTCAGGCATCCATTCCAGAAACCAACACAGTCATGCAGTTGGATCTTTTGTTAAATCCT-CCCAACTACCATTTCAAACCCAGAAAATCCAGAGCAGGAGCAA
i proCoq1.NW_012152574v1   I 26 C 0
s otoGar3.GL873550            29641 177 +  18854210 TTCTATTTATTCCTCTGTTGACAAGTAAGATGGCATCCACACCCTGGCTCCTTCCTGAGATACCCGGCTGCGGTCTCAGGCAGCCATTCCAGAAATCAATATAGTCATGCAACTGGATCTTTTGCTAAATCCTCCCCAACCTCTGTTTCAAACACAGAGAATCCAGAGCAAGAGCAA
i otoGar3.GL873550         I 4 C 0
s mm10.chr17               57786352 172 -  94987271 ATTGATTTATTTCTCTGCT---GAACAGGATGGCATCCACCCCTGGTCATCTCCCCGAAGTGCCTGGCTCTGATCTCGGGTACTCCTTCCAGCAACCGATACAGTCAACTATTTGTGTCTTTTGTTAA-TCTT-TCCCTCCATCATTTCAAACTCACAGCATCCAGAACACGAGCAA
i mm10.chr17               C 0 C 0
e colAng1.NW_012115566v1    2505307 44848 -   3067355 I

a score=785960.000000
s hg38.chr6_GL000254v2_alt   816176 70 +   4827813 GAGACCAACCTATCATCTGGAAACTCAAGGTGTAAACATTAGTGCCAAAGATTAGTCATGAAGGTAAGTT
s panTro5.chr6             29778997 70 + 175400573 GAGACCAACCTATCATCTGGAAACTCAAGGTGTAAACATTAGTGCCAAAGATTAGTCATGAAGGTAAGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30013607 70 + 173848474 GAGACCAACCTATCATCTGGAAACTCAAGGTGTAAACATTAGTGCCAAAGATTAGTCATGAAGGTAAGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5817054 70 +   6154872 GAGACCAACCTATCATCTGGAAACTCAAGGTGTAAACATTAGTGCCAAAGATTAGTCATGAAGGTAAGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74543245 70 + 122973662 GACACCAACCTATCATCCGGAAACTCAAGGTGTAAACATCAGTGCCAAAGATTAGTCATGAAGGTAAGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30008606 70 + 172585720 GAGACCAACCTATCATCTGGAAGCTCAAGGTGTAAACATTAGTGCCAAAGATAAGTTATGAAGGTAAGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29672499 70 - 170955103 GAGACCAACCTATCATCTGGAAGCTCAAGGTGTAAACATTAGTGCCAAAGATAAGTTATGAAGGTAAGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2718668 70 -   2996164 GAGACCAACCTATCATCTGGAAGCTCAAGGTGTAAACATTAGTGTCAAAGATAAGTTATGAAGGTAAGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     467970 70 +    766320 GAGACCAACCTATCATCTGGAAGCTCAAGGTGTAAACATTAGTGCCAAAGATAAGTTATGAAGGTAAGTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28926109 70 -  71996105 GAGACCAACCTATCATCTGGAAATTCAAGGTGTAAACATTAGTGCCAAAGATAAGTTATGAAGGTAAGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     101874 70 +    290775 GAGACCAACCTATCATCTGGAAACTCAAGGTGTAAACATTAGTGCCAAAGATAAGTTATGAAGGTAAGTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2550155 70 -   3067355 GAGACCAACCTATCATCTGGAAACTCAAGGTGTAAACATTAGTGCCAAAGATTAGTCATGAAGGTAAGTT
i colAng1.NW_012115566v1   I 44848 C 0
s saiBol1.JH378357           148399 68 -    242197 GAGACCAACCTATCACCTGG-AACTCAAGGTGTAAATATCAGTG-CAAAGAGTAGACATGAAGGTAAGTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     150829 69 -   1771730 GAGACCAACCTGTCATCTGGAAACTTAAGGTGTAAACATCAGTG-CAAAGAGTACACATGAAGGTAAGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     209683 70 -    457564 GAGACTAACCTATCATCTGGAAACTCAAGGTGTAAACATCAGTGCCAAAGACTAGATATGAAGGTAAGTT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     500687 70 +    730504 GAGACCAACTTATCATTTGGAAATTCAGGTTCTAAATATTAGTGCCAGACATTAGACATGAAGGTAAGTT
i proCoq1.NW_012152574v1   C 0 I 179
s otoGar3.GL873550            29818 70 +  18854210 GAGACCAACTTATCATCAGGAAACTCAAGTTCTAAATATCAGTTCCAGAGATTACACATGAAGGTAAGTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57786524 60 -  94987271 GACACCAACATA---------AACTCAAG-TCTGAAAATGGGGACCAGAGGTTAAACATGAAGGTAAGTT
i mm10.chr17               C 0 C 0

a score=1517872.000000
s hg38.chr6_GL000254v2_alt   816246 172 +   4827813 GGGTATTACAGTGCCCTACAACACA----ATGGTCTTGTGCCGAGAGCCACATTCTGAAATACCAAGTGAAGTTTGATGACACATTATATTATATATTTCACAACAGA-TTTGTCTTCTAGATGTGTGAGGGAGATGATGGGTTTATGTGTACAGGTGCACACATGCCT-------ATGTTTTG
s panTro5.chr6             29779067 172 + 175400573 AGGTATTACAGTGCCCTACAACAAA----ATGGTCTTGTGCCGAGAGCCACATTCTGAAATACCAAGTGAAGTTTGATGACACTTTATATTATATATTTCACAACAGA-TTTGTCTTCTAGATGTGTGAGGGAGATGATGGGTTTATATGTACAGGTGCACACATGCCT-------ATGTTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30013677 172 + 173848474 AGGTATTACAGTGCCCTACAACAAA----ATGGTCTTGTGCCGAGAGCCACATTCTGAAATACTAAGTGAAGTTTGATGACACATTATATTATATATTTCACAACAGA-TTTGTCTTCTAGATGTGTGAGGGAGATGATGGGTTTATGTGTACAGGTGCACACATGCCT-------ATGTTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5817124 172 +   6154872 GGGTATTACAGTGCCCTACAACAAA----ATGGTCTTGTGCCGAGAGCCACATTCTGAAATACCAAGTGAAGTTTGATGACACATTATATTATATATTTCACAACAGA-TTTGTCTTCTAGATGTGTGAGGGAGATGATGGGTTTATGTGTACAGGTGCACACATGCCT-------ATGTTTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74543315 172 + 122973662 GGGTGTTACAGTGCCCTACAACGAA----ATGGTCTTGTGCCGAGAGGCACATTCTGAAATACCAAGTGAAGTTTGATGACACGTTATATTATACATTTCACAACAGA-TTTGTCTTCTAGATGTGTGAGGGAGATGATGGGTTTATGTGTGCAGGTGCACACATGCCT-------ATGTTTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30008676 171 + 172585720 GGGTATTACAGTGCCCTACAGCAAA-----TTGTCTCGTGCCGAGAGATACATTCTGAAATACCAAGTGAAGTTTGATGACACATTATATTATATATTTCACAACAGA-TTTGTCTTCTAGATGTGTGAGGGAGATGATGGGTTTATGTTTACAGGTGCACACATGCCT-------GTGTTTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29672569 171 - 170955103 GGGTATTACAGTGCCCTACAGCAAA-----TTGTCTCGTGCCGAGAGATACATTCTGAAATACCAAGTGAAGTTTGATGACACATTATATTATATATTTCACAACAGA-TTTGTCTTCTAGATGTGTGAGGGAGATGATGGGTTTATGTTTACAGGTGCACACATGCCT-------GTGTTTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2718738 171 -   2996164 GGGTATTACAGTGCCCTACAGCAAA-----TTGTCTCGTGCCGAGAGATACATTCTGAAATACCAAGTGAAGTTTGATGACACATTATATTATATATTTCACAACAGA-TTTGTCTTCTAGATGTGTGAGGGAGATGATGGGTTTATGTTTACAGGTGCACACATGCCT-------GTGTTTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     468040 169 +    766320 GGGTATTACAGTGCCCTACAGCAAA-----TTGTCTCGTGCCGAGAGAT--ATTCTGAAATACTAAGTGAAGTTTGATGACACATTATATTATATATTTCACAACAGA-TTTGTCTTCTAGATGTGTGAGGGAGATGATGGGTTTATGTTTACAGGTGCACACATGCCT-------ATGTTTTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28926179 171 -  71996105 GGGTATTACAGTGCCCTACAGCAAA-----TTGTCTCATGCCGAAAGGTACATTCTGAAATACCAAGTGAAGTTTGATGACACATTATATTATATATTTCACAACAGA-TTTGTCCTCTAGATGTGTGAGGGAGATGATGGGTTTATGTTTATAGGTGCACACATGCCT-------ATGTTTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     101944 169 +    290775 GGGTATTACAGTGCCCTACAGCAAA-----TTGTCTCGTGCCGAGAG--ATATTCTGAAATACTAAGTGAAGTTTGATGACACATTATATTATATATTTCACAACAGA-TTTGTCTTCTAGATGTGTGAGGGAGATGATGGGTTTATGTTTACAGGTGCACACATGCCT-------ATGTTTTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2550225 172 -   3067355 GGGTATTACAGTGCCTTACAGCAAA----GTGGTCTTGTGCCGAGAGGCACATTCTGAAATACCAAGTGAAGTTTGACGACACATTATATTATATATTTCACAACAGA-TTTGTCTTCTAGATGTATGAGGGAGATGATGGGTTTATGTTTACAGGTGCACACATGCCT-------ATGTTTTG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           148467 171 -    242197 GGATATTAGATTGTCCTACAAAAAATTAAATGGTCTTATACTGAGAGGTGCATTCTGAAATACCAAGTGAAGTTTGATGACAC-----ATTATCTATTTCACAACAGA-TTTGTCTTCTAGACCTGTGACGGCAATGATGGGTTTATGTGTACAGGTGCACATATGCCT-------ATGTATTG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     150898 171 -   1771730 GGATATTAGAGTGTCCTACAAAAAATTAAATGGTCTTATACTGAGAGGCGCATTCTGAAATACCAAGTGAAGTTTGATGACAC-----ATTATCTATTTCACAACAGA-TTTGTCTTCCAGACGTGTGACGGCAATGATGAGTTTATGTGTACAGGTGCACATATGCTT-------ATGTATTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     209753 171 -    457564 GGATATTAGAGTGCCCTACAAAAAATTAAATGGTCTTATGCTGAGAGGCACATTCTGAAATACCAAGTGAAGTTTGATGACAT-----ATTATATATTTCACAACAGA-TTTGTCTTCTAGACGTGTGAGGGCAATGATGGGTTTATGTGTACAGGTGCACATATGCCT-------ATGTATTG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            29888 162 +  18854210 TAGTATCACAGTGCTTTGTAGCCAA-------------------AGGGCACACTCTAGAATACCACCTGCGGTTTGGGGACACATTATGCAACACATTTTACAACAGA-TTTACCTTGTAGATGTGTAAGGGGAAGGATGAGGGTATGTGTATGTGTATACATGTGTCTGAGCTACATATTT--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57786584 148 -  94987271 ---TGCTACATTCCCCTAAGAATAA----ATGATTTTGCAGCTCAGGGTGTGTTCTCAAAGATCAGGGGAGGTTTTAAGACGC-----ATTATTGAATTGATAACATATTTTGTCTTCTGAA------AACTCAGTGATGTGGGTGTGCGT-----------TAGAACT-------GTGTTCTT
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     500757 179 +    730504 I

a score=1202565.000000
s hg38.chr6_GL000254v2_alt   816418 105 +   4827813 GGGAATTTGTGC--------------------------------------------------------------------ATACATGTAACAAGAATGTTATCTGTGCAGTTTTATTATTGTGTGCCTGTTTTCATGGTGTGGCATATTTGAAGAGGAATGGTTTAGAGCTTG
s panTro5.chr6             29779239 105 + 175400573 GGGAATTTGTGC--------------------------------------------------------------------ATACATGTAACAAGAATGTTATCTGTGCAGTTTTATGATTGTGTGCCTGTTTTCATGGTGTGGCATATTTGAAGAGGAATGGTTTAGAGCTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30013849 105 + 173848474 GGGAATTTGTGC--------------------------------------------------------------------ATACATGTAACAAGAATGTTATCTGTGCAGTTTTATGATTGTGTGCCTGTTTTCATGGTGTGGCATATTTGAAGAGGAATGGTTTAGAGCTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5817296 105 +   6154872 GGGAATTTGTGC--------------------------------------------------------------------ATACATGTAACAAGAATGTTATCTGTGCAGTTTTATTATTGTGTGCCTGTTTTCATGGTGTGGCATATTTGAAGAGGAATGGTTTAGAGCTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74543487 105 + 122973662 GGGAATTTGTGC--------------------------------------------------------------------ACACATGTAACAAGAATGTTATCTGTGCAGTTTTATTATTGTGTGCCTGTTTTCATGGTGTGGCATATTTGAAGAGGAATGGTTTAGAGCTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30008847 105 + 172585720 GGGAATTTGTGC--------------------------------------------------------------------ATACATGTAACAAGAATGTTATCTGTGCAATTTTATTATTGTGTGCCTGTTTTCATGGTGTGGCATATTTGAAGAGGAATGGTTTAGAGCTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29672740 105 - 170955103 GGGAATTTGTGC--------------------------------------------------------------------ATACATGTAACAAGAATGTTATCTGTGCAATTTTATTATTGTGTGCCTGTTTTCATGGTGTGGCATATTTGAAGAGGAATGGTTTAGAGCTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2718909 105 -   2996164 GGGAATTTGTGC--------------------------------------------------------------------ATACATGTAACAAGAATGTTATCTGTGCAATTTTATTATTGTGTGCCTGTTTTCATGGTGTGGCATATTTGAAGAGGAATGGTTTAGAGCTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     468209 105 +    766320 GGGAATTTGTGC--------------------------------------------------------------------ATACATGTAACAAGAATGTTATCTGTGCAATTTTATTATTGTGTGCCTGTTTTCATGGTGTGGCATATTTGAAGAGGAATGGTTTAGAGCTTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28926350 105 -  71996105 GGGAATTTGTGC--------------------------------------------------------------------ATACATGTAACAAGAATGTTATCTGTGCAATTTTATTATTGTGTGCCTGTTTTCATGGTGTGGCATATTTGAAGAGGAATGGTTTAGAGCTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     102113 105 +    290775 GGGAATTTGTGC--------------------------------------------------------------------ATACATGTAACAAGAATGTTATCTATGCAATTTTATTATTGTGTGCCTGTTTTCATGGTGTGGCATATTTGAAGAGGAATGGTTTAGAGCGTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2550397 105 -   3067355 GGAAATATGTGC--------------------------------------------------------------------ATACATGTAACAAGAATGTTATCTGTGCAGTTTTATTATTGTGTGCCTGTTTTCATGGTGTGGCATATTTGAAGAGGAATGGTTTAGAGCTTG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           148638 105 -    242197 GAGAATTTGTTC--------------------------------------------------------------------ACACGTGTAACAAGAATGTTATCTATGTAGTTTTATTATTGTGTGCCTCTTTTCATGGTGTGGCATATTTGAAGAGGAATGGTTTAGAGCTTG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     151069 105 -   1771730 GAGAATTTGTGC--------------------------------------------------------------------ACACGTGTAACAAGAATGTTATCTATGTAGTTTCATTATTGTGTGCCTCTTTTCATGGTGTGACATATTTGAAGAGGAATGGTTTAGAGCTTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     209924 105 -    457564 GAGAATTTTTGC--------------------------------------------------------------------ATACATGTAACAAGAATGTTATCTGTGTAGTTTTAGTATTGTGTGCCTGTTTTCATGGTGTGGTATATTTGAAGAGGAATGTTTTAGAGCTTG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     500936 105 +    730504 gggaatttgtaC--------------------------------------------------------------------ATACATGTAATCAAGATGCTAACAATGCAATTTTATTTGTGTGTGCCTGTTTTCATGGCACGGCATGTTTGAAGAGGAATGGTTTAAGGCTTG
i proCoq1.NW_012152574v1   I 179 I 6590
s otoGar3.GL873550            30050 173 +  18854210 GGGGATTTGTGCATATAAGGTTTGTCCAAAGCTATCCTCATTTATATCAATAACGGCTGGATACTTTTTGAATAAACCTGATACATATAGTAAGGATGCCAGTTATACAATTTTGCTTGTGTGTGCCTATTTTCATGGTGTAGCATGTTTGAAGAGGAATGGTTTGAGGCTTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57786732  94 -  94987271 GGGGATTTGTAC--------------------------------------------------------------------ATAAG----AAAAAGACATTGTCTGTGGAGTTTTATAAGTGTGTACCCGTTTTATT-------CATCCCTGAAGGCAAATGTTTTAGGACTTG
i mm10.chr17               C 0 C 0

a score=3026836.000000
s hg38.chr6_GL000254v2_alt   816523 320 +   4827813 CCAGGCTGAACAGTTATGTGTCCGTGTAATCACCGCATTAAAGAATTTGACCTTTTGTAACTCAACATCTCTAGCC-------ACCATTGGTCTGTAAGCCTGAATGTCACCTCTCCTACTTTATTCATCTCTGATATGACCCCAA-ATTATAAAATGATCTATAAATATAGGTAAGACTTTGCATG-TCCTTTCATACTCCACAGTCTCTAGCACAGTGGATCCTGGT-------------------------------------TGATCaaaca-ggaaggacctcgaagttagtcaaatataagtggaaaacctattaagcatttacaaataatgtggccttgggcaagtaatttaacttcagt
s panTro5.chr6             29779344 320 + 175400573 CCTGGCTAAACTGTTGTGTGTCCGTGTAATCACCGCATTAAAGAATTTGACCTTTTGTAACTCAACATCTCTAGCC-------ACCATTGGTCTGTAAGCCTGAATGTCACCTCTCCTACTTTATTCATCTCTGATATGACCCCAA-ATTATAAAATGATCTATAAATATAGGTAAGACTTTGCATG-TCCTTTCATACTCCACAGTCTCTAGCACAGTGGATCCTGGT-------------------------------------TGATCaaaca-ggaaggacctcgaagttagtcaaatataagtggaaaacctattaagcatttacaaatgatgtggccttgggcaagtaatttaacttcagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30013954 320 + 173848474 CCTGGCTAAACTGTTGTGTCTCCGTGTAATCACCGCATTAAAGAATTTGACCTTTTGTAACTCAACATCTCTAGCC-------ACCATTGGTCTGTAAGCCTGAATGTCACCTCTCCTACTTTATTCATCTCTGATATGACCCCAA-ATTATAAAATGATCTATAAATATAGGTAAGACTTTGCATG-TCCTTTCATACTCCACAGTCTCTAGCACAGTGGATCCTGGC-------------------------------------TGATCaaaca-ggaaggacctcgaagttagtcaaatataagtggaaaacctattaagcatttacaaatgatgtggccttgggcaagtaatttaacttcagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5817401 320 +   6154872 CCTGGCTAAACTGTTGTGTGTCCGTGTAATCACCGCATTAAAGAATTTGACCTTTTGTAACTCAACATCTCTAGCC-------ACCATTGGTCTGTAAGCCTGAATGTCACCTCTCCTACTTTATTCATCTCTGATATGACCCCAA-ATTATAAAATGATCTATAAATATAGGTAAGACTTTGCATG-TCCTTTCATGCTCCACAGTCTCTAGCACAGTGGATCCTGGC-------------------------------------TGATCaaaca-ggaaggacctcgaagttagtcaaatataaatggaaaacctattaagcatttacaaatgatgtggccttgggcaagtaatttaacttcaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74543592 320 + 122973662 CCTGGCTAAACTGTTGTGTGTCCGTGTAATTACCGCATTGAAGAATTTGACCTTTTGTAACTCAACATCTCTAGCC-------ACCATTGGTCTGTAAGCCTGAATGTCACCTCTCCTACTTTATTCCTCTCTGATATGACCCCAA-ATTATAAAATGATCTATAAATATAGGTCAGACTTTGCATG-TCCTTTTATACTCCACAGTCTCTAGCACAGTGGATCCTGGT-------------------------------------TGATCaaaca-ggaaggacctcgaagttagtcaaatataagtggaaaacctattaagcatttacaaatgatgtggccttgggcaagtaatttaacttcaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30008952 317 + 172585720 CCTGGCTAAACTGTTGAGTGTCTGTGTAATCA---CATTAAAGAATTTGACCTTTTGTAACTCAACATCTCTAGCC-------ACCATAGGTCTGTAAGCCTGAAT-TCACCTCTCCTATTTTATTCATCTCTGATATGACCCCAA-ATTATAAAATTATCTCTAAATATAGGTCAGACTTTGCATG-TCCTTTTATACTCCACAGTCTCTAGCACAGTGGAGCCTGGT-------------------------------------TGATCAAACAGGGAAggaccttgaagttagtcaaatataagtggaagacctattaagcatttacaaatgatgtggccttgggcaagtaatttaacttcaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29672845 317 - 170955103 CCTGGCTAAACTGTTGAGTGTCTGTGTAATCA---CATTAAAGAATTTGACCTTTTGTAACTCAACATCTCTAGCC-------ACCATAGGTCTGTAAGCCTGAAT-TCACCTCTCCTATTTTATTCATCTCTGATATGACCCCAA-ATTATAAAATTATCTCTAAATATAGGTCAGACTTTGCATG-TCCTTTTATACTCCACAGTCTCTAGCACAGTGGAGCCTGGT-------------------------------------TGATCAAACAGGGAAggaccttgaagttagtcaaatataagtggaagacctattaagcatttacaaatgatgtggccttgggcaagtaatttaacttcaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2719014 317 -   2996164 CCTGGCTAAACTGTTGAGTGTCTGTGTAATCA---CATTAAAGAATTTGACCTTTTGTAACTCAACATCTCTAGCC-------ACCATAGGTCTGTAAGCCTGAAT-TCACCTCTCCTATTTTATTCATCTCTGATATGACCCCAA-ATTATAAAATTATCTCTAAATATAGGTCAGACTTTGCATG-TCCTTTTATACTCCACAGTCTCTAGCACAGTGGAGCCTGGT-------------------------------------TGATCAAACAGGGAAggaccttgaagttagtcaaatataagtggaagacctattaagcatttacaaatgatgtggccttgggcaagtaatttaacttcaat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     468314 317 +    766320 CCTGGCTAAACTGTTGAGTGTCTGTGTAATCA---CATTAAAGAATTTGACCTTTTGTAACTCAACATCTCTAGCC-------ACCATAGGTCTGTAAGCCTGAATGTCACCTCTCCTATTTTATTCATCTCTGATATGACCCCAA-ATTATAAAATTATCTCTAAATATAGGTCAGACTTTGCATG--CCTTTTGTACTCCACAGTCTCTAGCACAGTGGAGCCTGGT-------------------------------------TGATCAAACAGGGAAggaccttgaagttagtcaaatataagtggaaaacctattaagcatttacaaatgatgtggctttgggcaagtaatttaacttcaat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28926455 321 -  71996105 CCTGGCTAAACTGTTGAGTGTCTGTGTAATCACTGCATTAAAGAATTTGACCTTTTGTAACTCAACGTCTCTAGCC-------ACCATAGGTCTGTAAGCCTGAATGTCACCTCTCCTACTTTATTCATCTCTGATATGACCCCAA-ATTATAAAATTATCTCTAAATATAGGTCAGACTTTGCATG-TCCTTTTATACTCCACAGTCTCTAGCACAGTAGAGCCTGGT-------------------------------------TGATCAAACAGGGAAggacctcaaagttagtcaaatataagtggaaaacttattaagcatttacaaatgatgtggccttgggcaagtaatttaacttcAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     102218 317 +    290775 CCTGGCTAAACTGTTGAGTGTCTGTGTAATCA---CATTAAAGAATTTGACCTTTTGTAACTCAACATCTCTAGCC-------ACCATAGGTCTGTAAGCCTGAATGTCACCTCTCCTATTTTATTCATCTCTGATATGACCCCAA-ATTATAAAATTATCTCTAAATATAGGTCAGACTTTGCATG--CCTTTTGTACTCCACAGTCTCTAGCACAGTGGAGCCTGGT-------------------------------------TGATCAAACAGGGAAggaccttgaagttagtcaaatataagtggaaaacctattaagcatttacaaatgatgtggctttgggcaagtaatttaacttcaat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2550502 321 -   3067355 CCTGGCTAAACTGTTGAGTGTCCGTGTAATCACCGCATTAAAGAATTTGACCTTTTGTAACTCAACATCTCTAGCC-------ACCATAGGTCTGTAAGCCTGAATGTCACCTCCCCTACTTTATTCATCTCTGATATGACCCCAA-ATTATAAAATTATCTCTAAATGTAGGTCAGATTTTGCATG-TCCTTTTATACTCCACAGTCTCTAGCACAGTGGAGCCTGGT-------------------------------------TGATCAAACAGGGAAggatcttgaagttagtcaaatataagcggaaaacctattaagcatttacaaatgatgtggccttgggcaagtaatttaacttcaat
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           148743 316 -    242197 CCTGGCTAAACTGTTGTGTGATCATGTAATCACAGCACTAAGGAATTTGACTTTTTGTAATTCGACATCTCTAGCCTCTAGCCACCATTGGTCTGTAAG-----------CCTCTTCTACTTTACTCATCTCTGATATGATCCCAA-ATTATAAAATTAACTATAAATATAGATCAGACTTTACATA-TCCTTTTATACTCCACAGTCTCTAGCAAAGTGGAGCCTGGT-------------------------------------TGATCAAACAGGTAAGGCCCTCAAAGTTAGTCAAATACAAGTGGAA-ACTTATTAAGCATTTACAAATGATCTGGCCTTGGGCAAGTAAATTAACTTCAAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     151174 327 -   1771730 CCTGGCTAAACTGTTGTGTGATCATGTAATCACAGCACTAAAGAATTTGACTTTTTGTAACTCAACATCTCTAGCCTCTAGCTGCCATTGGTCTGTAAGCCTGAATGTCACCTCTTCTACTTTACTCATCTCCGATATGACCCCAA-ATTATAAAATTATCTATAAATATAGGTCTGACTTTGCATA-TTCTTTTATACTCCACAGTATCTAGCAAAGTGGAGCCTGGT-------------------------------------TGATCAAACAGGTAAGGCCCTCGAAGTTAGTCAAATACAAGTGGAA-ACTTATTAAGCATTTGCAAATGATCTGGCCTTGGGCAAGTAATTTAACTTCAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     210029 327 -    457564 CCCGGCTAAACTGTTGTGTGCCCATGTAATCACAGCACTAAAGAATTTGACTTTTTGTAACTCAACATCTCTAGCCTCTAGCCACCATTGGTCTGTAAGCCTGAACATCACCTCTTCTACTTTATTCATCTCTGATATGACCCCAA-ATTATAAAATTATCTATAAGGATAGGTCAGACTTTGCATG-TCCTTTTATACTCCACAGTCTCTAGCACAGTGGAGCCTGGT-------------------------------------TGATAAAACAGGTAAGGCTCTCTAAGATAGTCAAATACAAGTTGAA-ACCTATTAAGCATTTACAAATGATTTGGCCTTGGGCAAATAATTTAACTTCAAT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            30223 352 +  18854210 CGTGGCTGAAAGG-GGTGTAACTATGTAATCACAGCACTAAAGAATTTGACTTTTTGTAACTCAACATCACTAGCC-------ACCAATGGTCCATAAGCCGGAGTGTCACCTCTGGTATTTTATTCATCTCCAGTATGACCCTAATGCTGTAAAATTACCTAGAAACGAAGGTTGGGCTTAGCAAATTCTTTTTCTCCTCCATAATTTCTCAAGTAACAGAGCCCAGTATATATATATAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATAAA-GCAATGACCTCAA----AGTCAGATGTGAATAGAA-ATGTATTAAGTGTTTATAAACAATGTGACCTTGGACAAATTATTTAACTTCA-T
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57786826 302 -  94987271 CCTAGCTGTGCTGACATACGGTTATGCAATCCCAACACTGAAGAGTTTGACTTTTTGTAATTCAACAACTCCAGCC---AGCCACTACTACTTCACAG--TTTATTGCCATGTCTTAAATTTCATTC---------ATGTTCCAAT-GCTATGAAGTTGTCTAGAAATAAAGATGAAGCTTTTCATG-TCCCTTTATCGTCCATAA--TCTGGCATAATAGAACCTGTG-------------------------------------AACTCAGCCA-----AGACCTTGGAGTTAATCAGGTTTAAGTCAAAATCTTCT--ATCATTCATAAACAATGTGACGGTGGACA---CATTTAATTTTGAT
i mm10.chr17               C 0 I 392
e proCoq1.NW_012152574v1     501041 6590 +    730504 I

a score=1794617.000000
s hg38.chr6_GL000254v2_alt   816843 188 +   4827813 tactctcctaacatactctataaaataaggctaTTGCCTAATATTCAAGTGAGTTAAGATTAGAGTTAATAAATGAAAAGAGATGTAAATGTTCATAGCAGTTGTATCACTGCCTAGCATAAGAACCCCTT-AAAAACCTGTTTCTTAATTTGGGAAACAGATAT-GACGATAGTTAGCATTTATTAAAG
s panTro5.chr6             29779664 188 + 175400573 tactctcctaacatactctataaaataaggctattgcctaattttcaagtgagttaagattagagttaataaatgaaaagAGATGTAAATGTTCATAGCAGTTGTATCACTGCCTAGCATAAGAACCCCTT-AAAAACCTGTTTCTTAATTTGGGAAACAGATAT-GACGATAGTTAGCATTTATTAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30014274 188 + 173848474 tactctcctaacatactctataaaataaggctattgcctaattttcaagtgagttaagattagagttaataaatgaaaagAGATGTAAATGTTCATAGCAGTTGTATCACTGCCTAGCATAAGAACCCCTT-AAAAACCTGTTTCTTAATTTGGGAAACAGATAT-GACGATAGTTAGCATTTATTAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5817721 188 +   6154872 tactctcctaacatactctataaaataaggctattgcctaattttcaagtgagttaagattagagttagtaaatgaaaagagatgtaaatgttcatagcagttatatcactgcctagcataagaacccctt-aaaaaCCTGTTTCTTAATCTGGGAAACAGATAT-GACGATAGTTAGCATTTATTAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74543912 188 + 122973662 tactctcctaacatactctataaaataaggctattgcctaattttcaagtgagtaaagattagagttaataaatgaaaagAGATGTAAATGTTCATAGCAGTTATATCACTGCCTAGCATAAGAACACCTT-AAAAACCTGTTTCTTAATTTGGGAAACAGATAT-GACGATAGTTAGCATTTATTAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30009269 188 + 172585720 tactctcctaacacactctataaaataaggctattgcctaattttcaagtgagtaaagattagagttaataaatgaaaagcgATGTAAATGTTCATAGCAGTTATATCATTGCCTAGCATAAGAACCCCTT-AAAAACCTGTTTCTTAATTTGGGAAAAAGATAA-GACAATAGTTAGCATTTATTAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29673162 188 - 170955103 tactctcctaacacactctataaaataaggctattgcctaattttcaagtgagtaaagattagagttaataaatgaaaagcgATGTAAATGTTCATAGCAGTTATATCATTGCCTAGCATAAGAACCCCTT-AAAAACCTGTTTCTTAATTTGGGAAAAAGATAA-GACAATAGTTAGCATTTATTAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2719331 188 -   2996164 tactctcctaacacactctataaaataaggctattgcctaattttcaagtgagtaaagattagagttaataaatgaaaagcgATGTAAATGTTCATAGCAGTTATATCATTGCCTAGCATAAGAACCCCTT-AAAAACCTGTTTCTTAATTTGGGAAAAAGATAA-GACAATAGTTAGCATTTATTAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     468631 189 +    766320 tactctcctaacacactctataaaataaggctattgcctaattttcaagtgagtaaagattagagttaataaatgaaaagAGATGTAAATGTTCATAGCAGTTATATCATTGCCTAGCATAAGAACCCTTT-AAAAACCTGTTTCTTAATTTGGGAAAAAGATAACGACAATAGTTAGCATTTATTAAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28926776 188 -  71996105 TACTCTCCTAACACACTCAATAAAATAAGGCTATTGACTAATTTTCAAGTGAGTAAAGATTAGAGTTAATAAATGAAAAAAGATGTAAATGTTCATAGCAGTTATATCACTGCCTAGCGTAAGAACCCTTT-AAAAACTTGTTTCTTAATTTGGGAAACAGATAT-GACAATAGTTGGCATTTATTAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     102535 188 +    290775 tactctcctaacacactctataaaataaggctattgcctaattttcaagtgagtaaagattagagttaataaatgaaaagAGATGTAAATGTTCATAGCAGTTATATCATTGCCTAGCATAAGAACCCCTT-AAAAACCTGTTTCTTAATTTGGGAAAAAGATAT-GACAATAGTTAGCATTTATTAAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2550823 188 -   3067355 tactctcctaacacactctataaaataaggctattgcctaattttcaagtgagtaaagattagagttaataaatgaaaagAGATGTAAATGTTCATAGCAGTTATATCATTGCCTAGCATAAGAACCCCTT-AAAAACCTGTTTCTTAATTTGGGAAAAAGATAT-GACAATAGTTAGCATTTATTAAAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           149059 175 -    242197 TACTCTCCTAACATACTCTATAAAA-------------TAATTTTTAAGTGACTAAAGATTAGAGTTAATAAATGAAAAGGGATGTAAATGTTCATAGCAGTTACATCACTGCCTAGCATAAGAACCACTT-AGAAACCTGTTTCTTGGTTTGGGAAACAGATGT-GACAATAGTTAGCATCTATTAAGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     151501 188 -   1771730 TACTCTCCTAACATACTCTATGAAATAAGACTATTGCCTAATTTTCAAGTGAGTAAAGATTAGAGTTAATAAATGAAAAGGGAAGTAAATGTTCATAGCAATTACGTCACTGCCTAGCATAAGATCCCCTT-AGAAACCTGTTTCTTGGTTTGGGAAACAGATGT-GACAATAGTTAGCGTCTATTAAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     210356 188 -    457564 TACTCTCCTAACATACTCTATAAAATAAGACTATTGCCTAATTTTCAAGTGAGTAAAGATTAGAGTTAGTAAACGAAAAGGGATGTAAATGTTCATAGCAGTTACATCACTGCCTAGCATAAGAACCCCTT-AGAAACCTGTTTCTTGGTTTGGGAAACAGATGT-GACAATAGTTAGCATCTATTAAGG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            30575 186 +  18854210 TACTCTCTTATCTAACTCTATAAAATAAGGCCATTACCTAGTTTTCAGGTGAATAAAGATTGGAGCTAATATACAAAAAGGAACATTAATTTTCATACCAGTTCTGTCACTACCTAATGTAAGAACCCTTGAAAAAATCTGTTTGTGGATTGGTGAAATAGGAAT-GATTAGGGTTATAatttatta---
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57787128 392 -  94987271 I
e proCoq1.NW_012152574v1     501041 6590 +    730504 I

a score=1169135.000000
s hg38.chr6_GL000254v2_alt   817031 110 +   4827813 GATGACA---GTTAA----CAACtgctatgtgccaggccttgttctaacagcttttcatatttagcccacttaacatatttctattttcatatgaggaaactgaggcagagagaggc
s panTro5.chr6             29779852 113 + 175400573 GATGACAATAGTTAA----CAACtgctatgtaccaggccttgttctaacagcttttcatatttagcccacttaacatatttctattttcatatgaggaaactgaggcagagagaggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30014462 113 + 173848474 GATGACAATAGTTAA----CAACtgctatgtgccaggccttgttctaacagcttttcatatttagcccacttaacatatttctattttcatatgaggaaactgaggcagagagaggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5817909 113 +   6154872 GATGACAATAGTTAA----CAACtgctatgtgccaggccttgttctaacagcttttcatatttagcccacttaacatatttctattttcatatgaggaaactgaggcagagagaggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74544100 113 + 122973662 GATGACAATAGTTAA----CAACtgctatgtgccaggacttgttctaacagcttttcatatttagcccacttaacatatttctattttcatatgaggaaactgaggcagagagaggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30009457 113 + 172585720 GATGACAATAGTTAA----CAACtgctatgtgccaggcattgttctaacagcttttcatatttagcccccttaacatatttctattttcatatgaggaaactgaggcagagagaggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29673350 113 - 170955103 GATGACAATAGTTAA----CAACtgctatgtgccaggcattgttctaacagcttttcatatttagcccccttaacatatttctattttcatatgaggaaactgaggcagagagaggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2719519 113 -   2996164 GATGACAATAGTTAA----CAACtgctatgtgccaggcattgttctaacagcttttcatatttagcccccttaacatatttctattttcatatgaggaaactgaggcagagagaggc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     468820 113 +    766320 GATGACAATAGTTaa----caactgctatgtgccaggcattgttctaacagcttttcatatttagcccacttaacatatttctattttcatatgaggaaactgaggcagagagaggc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28926964 113 -  71996105 GATGACAATAGTTAA----CAACtgctatgtgccaggcattgttctaatagcttttcatATTCAGCCCACTTAACAtatttctattttcatatgaggaaactgaggcagagagaggc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     102723 113 +    290775 GATGACAATAGTTAA----CAACtgctatgtgccaggcattgttctaacagcttttcatatttagcccacttaacatatttctattttcatatgaggaaactgaggcagagagaggc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2551011 113 -   3067355 GATGACAATAGTTAA----CAACtgctatgtgccaggcattgttctaacagcttttcatatttagcccacttaacatatttctattttcatatgaggaaaccgaggcagagagaggc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           149234 113 -    242197 GATGACAATAGTTaa----tgcctgctttgtgccaggtgttgttctaacagcttttcatatttagcccatttaacatatttcaattttcatatgaggaaactgaggcagagagaggc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     151689 113 -   1771730 GATGACAATAGTTaa----tgcctgctttgtgccaggcactgttctaacggcttttcatatttagcccacttaacatagttctattttcatatgaggaaactgaggcagagagaggc
i cebCap1.NW_016107755v1   C 0 I 354
s aotNan1.NW_018509740v1     210544 113 -    457564 GATGACAATAGTTaa----cacctgctttgtaccaggcattgttctaacagcttttcatatttagcccatttaacatatttctattttcatatgaggaaactgaggcagagagaggc
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            30761  98 +  18854210 -------------aa----taacagctatgtgccaggcactgtgctaagagctttgtgtgtttagcccactaagcccacttctatttgcataggaggaaagtggggcacagagag--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57787520 113 -  94987271 ---Gataacagttaacactcacctactgtgtgccaggcactgttcaaagcactctgtgtatttaactcttgttaccaacttatgtttccatgggacg-aataggggcacagaggggt
i mm10.chr17               I 392 C 0
e proCoq1.NW_012152574v1     501041 6590 +    730504 I

a score=233142.000000
s hg38.chr6_GL000254v2_alt   817141 28 +   4827813 taagtaacatacccaaggttttccagct
s panTro5.chr6             29779965 28 + 175400573 taagtaacatacccaagttttttcagct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30014575 27 + 173848474 taagtaacatacccaag-tttttcagct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5818022 28 +   6154872 taagtaacatacccaaagtttttcagct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74544213 28 + 122973662 taggtaacatgcccaaggtttttcagct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30009570 28 + 172585720 taagtaacatgcccaaggttgttcagct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29673463 28 - 170955103 taagtaacatgcccaaggttgttcagct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2719632 28 -   2996164 taagtaacatgcccaaggttgttcagct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     468933 28 +    766320 taagtaacatgcccaaggttgttcagct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28927077 28 -  71996105 taagtaacatgcccaaggttgttcagct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     102836 28 +    290775 taagtaacatgcccaaggttgttcagct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2551124 28 -   3067355 taagtaacatgcccaaggttgttcagct
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           149347 28 -    242197 caagtaatatgcccaagattgctcagct
i saiBol1.JH378357         C 0 I 327
s aotNan1.NW_018509740v1     210657 28 -    457564 caagtaacatgcccaaggttgctcagct
i aotNan1.NW_018509740v1   C 0 I 345
s otoGar3.GL873550            30859 25 +  18854210 ---gtaacatactcaaagttgctcagct
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57787633 26 -  94987271 taggt-acatgctcatgggta-tcatct
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     501041 6590 +    730504 I
e cebCap1.NW_016107755v1     151802 354 -   1771730 I

a score=5218592.000000
s hg38.chr6_GL000254v2_alt   817169 600 +   4827813 agaaaatggcagagccaggactcaaacccaggcagtctggctgctgagccctggttcttaattaTGACATTAATGCTTATTCTGCCCAGTGAGGATAAAATGA-----------GTGAAAC--------------ATAAAATCA-----------AACAG-----GATGTTTTGGTAGGGAGCAGTG----------------------------------------------------TTTTTTCCCTCTG---------AAAA--ATGAAAAA----------------------------------------TTAGGTTATT-----------------------------------------------------GTGATTTTGTAATTT----------------ACAGCAGTGAATATGATGTGAAA---AATAAGTTATCCATATAATAATTTATGTCAGGAGTCATGCAGCAGAAAGATTTCTGTCCATCACATAAACTTTCATCCATTACATAACCCATA--TGTT-TCTGTACCATTAAGACACTTG-GTTCAAC-----------------------A---------AGACCC-TTGGAGAATGAGGTTCC-TTTTGTTCCCTGGGGTTCTCTTTTTATT---TT---ATTTTTGGATTAATATTTGATAGTAAAGCCAAGGATTTGGGACaggaaacttagatgacatctagttcaaactccttgatttacatatg-aaaaaattgagacag-agggaaatgaa--gatttccccatatcatataactggctaaag--ggagctatg-taggtaaaacca------------agatgtcctgatattctagtcTACCAGAAAGTGTTC
s panTro5.chr6             29779993 600 + 175400573 agaaaatggcagagccaggactcaaacccaggcagtctggctgctgagccctggttcttaattaTGACATTAATGCTTGTTCTGCCCAGTGAGGATAAAATGA-----------GTGAAAC--------------ATAAAATCA-----------AACAG-----GATGTTTTGGTAGGGAGCAGTG----------------------------------------------------TTTTTTCCCTCTG---------AAAA--ATGAAAAA----------------------------------------TTAGGTTATT-----------------------------------------------------GTGATTTTGTAATTT----------------ACAGCAGTGAATATTATGTGAAA---AATAAGTTATCTATATAATAATTTATGTCAGGAGTCATGCAGCAGAAAGATTTCTGTCCATCACATAAACTTTCATCCATTACATAACCCATA--TGTT-TCTGTACCATTAAGACACTTG-GTTCAAC-----------------------A---------AGACCC-TTGGAGAATGAGGTTCC-TTTTGTTCCCTGGGGTTCTCTTTTTATT---TT---ATTTTTGGATTAATATTTGATAGTAAAGCCAAGGATTTGGGACaggaaacttagatgtcatctagttcaaactccaagatttacatatg-aaaaaattgagacag-agggaaatgaa--gatttccccatatcatataactggctaaag--ggagctatg-taggtaaaacca------------agacgtcctgatattctagtcTACCGGAAAGTGTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30014602 600 + 173848474 agaaaatggcagagccaggactcaaacccaggcagtctggctgctgagccctggttcttaattacgacattaATGTTTGTTCTGCCCAGTGAGGATAAAATGA-----------GTGAAAC--------------ATAAAATCA-----------AACAG-----GATGTTTTGGTAGGGAGCAGTG----------------------------------------------------TTTTTTCCCTCTG---------AAAA--ATGAAAAA----------------------------------------TTAGGTTATT-----------------------------------------------------GTGATTTTGTAATTT----------------ACAGCAGCGAATATGATGTGAAA---AATAAGTTATCTATATAATAATTTATGTCAGGAGTCATGCAGCAGAAAGATTTCTGTCCATCACATAAACTTTCATCCATTACATAACCCATA--TGTT-TCTGTACCATTAAGACACTTG-GTTCAAC-----------------------A---------AGACCC-TTGGAGAATGAGGTTCC-TTTTGTTCCCTGGGGTTCTCTTTTTATT---TT---ATTTTTGGATTAATATTTGATAGTAAAGCCAAGgagttgggacaggaaacttagatgtcatctagttcaaactccttgatttacatatg-aaaaaattgagacag-agggaaatgaa--gatttccccatatcatataactggctaaag--ggagctatg-taggtaaaacca------------attcgtcctgatattctagtctaccagaaagtgttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5818050 600 +   6154872 agaaaatggcagagccaggactcaaacccaggcagtctggctgctgagccctggttcttaattatgacattaATGCTTGTTCTGCCCAGTGAGGATAAAATGA-----------GTGAAAC--------------ATAAAATCA-----------AACAG-----GATGTTTTGATAGGGAGCAGTG----------------------------------------------------TTTTTTCCCTCTG---------AAAA--ATGAAAAA----------------------------------------TTAGGTTATT-----------------------------------------------------GTGATTTTGTAATTT----------------ACAGCAGTGAATATGATGTGAAA---AATAAGTTATCTATATAATAATTTATGTCAGGAGTCATGCAACAGAAAGATTTCTGTCCATCACATAAACTTTCATCCATTACATAACCCATA--TGTT-TCTGTACCATTAAGACACTTG-GTTCAAC-----------------------A---------AGACCC-TTGGAGAATGAGGTTCC-TTTTGTTCCCTGGGGTTCTCTTTTTATT---TT---ATTTTTGGATTAATATTTGATAGTAAAGCCAAGgagttgggacaggaaacttagatgtcatctagttcaaactccttgatttacatatg-aaaaaattgagacag-agggaaacgaa--gatttccccatatcatataactggctaaag--ggagctatg-taggtaaaacca------------agatgtcctgatattctagtcTACCAGAAAGTGTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74544241 601 + 122973662 agaaaatggcagagccaggactcaaacccaggcagtctgtctgctgagccctggttcttaatcacAACATTAATGCTTGCTCTGCCCAGTGAGGATAAAATGA-----------GGGAAAC--------------ATGAAATCA-----------AACAG-----GATGTTTTGGTAGGGAACAGTG----------------------------------------------------TTTTTTCCCCCTG---------AAAA--ATGAAAAA----------------------------------------TTAGGTTATT-----------------------------------------------------GTGATTTTGTAATTT----------------AGAGCAGTGAATATGATGTGAAA---AATAAGTTATCTATACAATAATTTATGTCAGGAGTCATGCAGCAGAAAGATTTCTATCCATCACATAAACTTTCATCCATCACATAAACCATA--TGTT-TCTGTACCATTAAGACACTTG-GTTCAAC-----------------------A---------AGACCCTTTGGAGAATGAGGTTCC-TTTTGTTCCCTGGGGTTCTCTTTTTATT---TT---ATTTTTTGATTAATATTTGATAGTAAAGCCAAGgagttgggacaggaaacttagatgtcatctagttcaaactccttgatttacacgtg-aaaaaattgagatag-agggaaatgaa--gatttccccatatcatataactggctaaag--ggagctatg-taggtaaaacca------------aggtgtcctgatgttctggtcTACCAGAAAGTGTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30009598 601 + 172585720 agaaaatggcagagccaggactcaaacccaggcagtctggctgcgaagccctggttcttaatcacAACATTAATGCTTGTTCTGCCCAGTGAGGAT-AAATGA-----------ATGCAAC--------------ATACAATCA-----------AACAG-----GATGCTTTGGTAGGGAACAGTG-----------------------------------------------------TTTTTCCCCCTG---------AAAA--ATGAAAAA----------------------------------------TTAGGTTACT-----------------------------------------------------GTGCTTTTGTAATTA----------------AGAGAAGTGAATATGATGTGTAA---AATAAGTTATCTACACAACAATTTATGTCAGGAGTCATGCAGCAGAAAGATTTCTATCCATCACATAAACTTTCATCCATCACATAAACCATA--TGTT-TCTGTACCATTAAGACGCTTG-GTTCAAC-----------------------A---------AGACCCTTTGGAAAATGAGGTTCC-TTTTGTTCCCTGGGGTTCTCTTTTTATT---TTTTATTTTTTTGATCAATATTTGGTAGTAAAGTGAAGgagttcggacaggaaacttagatgtcatctagttcaaactccttgatttacacatg-agaaaactgagacaa-agggaaatgaa--gatatccccatatcacataactggctaaag--ggag-tatgctaggtaaaacca------------agatgtcctgac-ttctggtctaccagaaagtgttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29673491 604 - 170955103 agaaaatggcagagccaggactcaaacccaggcagtctggctgcgaagccctggttcttaatcacAACATTAATGCTTGTTCTGCCCAGTGAGGAT-AAATGA-----------GTGCAAC--------------ATACAATCA-----------AACAG-----GATGCTTTGGTAGGGAACAGTG-----------------------------------------------------TTTTTCCCCCTG---------AAAA--ATGAAAAA----------------------------------------TTAGGTTACT-----------------------------------------------------GTGCTTTTGTAATTA----------------AGAGAAGTGAATATGATGTGTAA---AATAAGTTATCTACACAACAATTTATGTCAGGAGTCATGCAGCAGAAAGATTTCTATCCATCACATAAACTTTCATCCATCACATAAACCATA--TGTT-TCTGTACCATTAAGACGCTAG-GTTCAAC-----------------------A---------AGACCCTTTGGAAAATGAGGTTCC-TTTTGTTCCCTGGGGTTCTCtttttattttattttttttttttgatCAATATTTGGTAGTAAAGTGAAGgagttcggacaggaaacttagatgtcatctagttcaaactccttgatttacacatg-agaaaactgagacaa-agggaaatgaa--gatatccccatatcacataactggctaaag--ggag-tatgctaggtaaaacca------------agatgtcctgac-ttctggtcTACCAGAAAGTGTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2719660 601 -   2996164 agaaaatggcagagccaggactcaaacccaggcagtctggctgcgaagccctggttcttaatcacAACATTAATGCTTGTTCTGCCCAGTGAGGAT-AAATGA-----------GTGCAAC--------------ATACAATCA-----------AACAG-----GATGCTTTGGTAGGGAACAGTG-----------------------------------------------------TTTTTCCCCCTG---------AAAA--ATGAAAAA----------------------------------------TTAGGTTACT-----------------------------------------------------GTGCTTTTGTAATTA----------------AGAGAAGTGAATATGATGTGTAA---AATAAGTTATCTACACAACAATTTATGTCAGGAGTCATGCAGCAGAAAGATTTCTATCCATCACATAAACTTTCATCCATCACATAAACCATA--TGTT-TCTGTACCATTAAGACGCTTG-GTTCAAC-----------------------A---------AGACCCTTTGGAAAATGAGGTTCC-TTTTGTTCCCTGGGGTTCTCTTTTTATT---TTTTATTTTTTTGATCAATATTTGGTAGTAAAGTGAAGgagttcggacaggaaacttagatgtcatctagttcaaactccttgatttacacatg-agaaaactgagacaa-agggaaatgaa--gatatccccatatcacataactggctaaag--ggag-tatgctaggtaaaacca------------agatgtcctgac-ttctggtctaccaggaagtgttc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     468961 601 +    766320 agaaaatggcagagccaggactcaaacccaggcagtctggctgctaagccctggttcttaatcacAACATTAATGCTTGTTCTGCCCAGTGAGGAT-AAATGA-----------GTGAAAC--------------ATACAATCA-----------AACAG-----GATGCTTTGATAGGGAACAGTG-----------------------------------------------------TTTTTCCCCCTG---------AAAA--ATGAAATA----------------------------------------TTAGGTTACT-----------------------------------------------------GTGCTTTTGTAATTA----------------AGAGAAGTGAATATGATGTGTAA---AATAAGTTATCTACACAATCATTTATGTCAGGAGTCATGCAGCAGAAAGATTTCTATCCATCACATAAACTTTCATCCATCACATAAACCATA--TGTT-TCTGTACCATTAAGATGCTTG-GTTCAAC-----------------------A---------AGACCCTTGGGAGAATGAGGTTCC-TTTTGTTCCCTGGGGTTCTCTTTTTATT---TTTTATTTTTTTGATCAATATTTGATAGTAAAGTGAAGgagttcggacaggaaacttagatgtcatctagttcaaactccttgatttacacatg-agaaaactgagacag-agggaaatgaa--gatatccccatatcacataactggctaaag--ggag-tatgctaggtaaaacca------------agatgtcctgac-ttctggtctaccagaaagtgttc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28927105 612 -  71996105 agaaaatggcagagccaggactcaaacccaggcagtctggctgctaagctctggttcttaatcacAACATTAATGCTTGTTCTGCCCAGTGAGGAT-AAATGA-----------GTGAAAC--------------ATACAATCAAACAGGATGCTAACAG-----GATGCTTTGGTAGGGAACAGTG-----------------------------------------------------TTTTTCCCCCTG---------AAAA--ATGAAAAA----------------------------------------TTAGGTTACT-----------------------------------------------------GTGCTTTTGAAATTA----------------AGAGAAGTGAATATGGTGTGTAA---AATAAGTTATCTACACAACAATTTATGTCAGGAGTCACGCAGCAGAAAGATTTCTATCCATCACATAAACTTTCATCCATCACATAAACCATA--TGTT-TCTGTACCATTAAGACGCTTG-GTTCAAC-----------------------A---------AGACCCTTCGGAGAATGAGGTTCT-TTTTGTTCCCTGGGGTTCTCTTTTTATT---TTTTATTTTTTTGATCAATATTTGATAGTAAAGTAAAGgagttcggacaggaaacttagatgtcatctagttcaaactccttgatttacacatg-agaaaactgagacag-agggaaatgaa--gatatccccgaatcacataactggctaaag--gaag-tatgctaggtaaaacca------------agatgttctgac-ttctggtctaccagaaagtgttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     102864 601 +    290775 agaaaatggcagagccaggactcaaacccaggcagtctggctgctaagccctggttcttaatcacAACATTAATGCTTGTTCTGCCCAGTGAGGAT-AAATGA-----------GTGAAAC--------------ATACAATCA-----------AACAG-----GATGCTTTGGTAGGGAACAGTG-----------------------------------------------------TTTTTCCCCCTG---------AAAA--ATGAAAAA----------------------------------------TTAGGTTACT-----------------------------------------------------GTGCTTTTGTAATTA----------------AGAGAAGTGAATGTGATGTGTAA---AATAAGTTATCTACACAATAATTTATGTCAGGAGTCATGCAGCAGAAAGATTTCTATCCATCACATAAACTTTCATCCATCACATAAACCATA--TGTT-TCTGTACCATTAAGATGCTTG-GTTCAAC-----------------------A---------AGACCCTTGGGAGAATGAGGTTCC-TTTTGTTCCCTGGGGTTCTCTTTTTATT---TTTTATTTTTTTGATCAATATTTGATAGTAAAGTGAAGgagttcggacaggaaacttagatgtcatctagttcaaactccttgatttacacatg-agaaaactgagacag-agggaaatgaa--gatatccccatatcacataactggctaaag--ggag-tatgctaggtaaaacca------------agatgtcctgac-ttctggtctaccagaaagtgttc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2551152 601 -   3067355 agaaaatggcagagccaggactcaaacccaggcagtctggctgctaaaccctggttcttaatcacAACATTAATGCTTGTTCTGCCCAGTGAGGAT-AAATGA-----------GTGAAAC--------------ATACACTCA-----------AACAG-----GATGCTTTGGTAGGGAACGGTG-----------------------------------------------------TTTTTCCCCCTG---------AAAA--TTGAAAAA----------------------------------------TTAGGTTACT-----------------------------------------------------GTGCTTTTGTAATTA----------------AGAGAAGTGAATATGATGTGTAA---AATAAGTTATCTACACAATAATTTATGTCAGGAGTCACGCAGCAGAAAGATTTCTATCCATCACATAAACTTTCATCCATCACATAAACCATA--TGTT-TCTGTACCATTAAGACGCTTG-GTTCAAC-----------------------A---------AGACCCTTTGGAGAATGAGGTTCC-TTTTGTTCCCTGGGGTTCCCTTTTTATT---TTTTATTGTTTTGATCAATATTTGATAGTAAAGTGAAGGAGTTtggacaggaaacttacatgtcatctagttcaaactcctcgatttacacatg-agaaaactgagacag-agggaaatgaa--gatatccccatatcacataactggctaaag--ggag-tatgctaggtaaaacca------------aggtgtcctgac-ttctggtctaccagaaagtgttc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           149702 577 -    242197 agaaaatggcagagccaggactcgaacccaggcagtctggctgctgaggcctggttcttaatcacAGTATTAATGCTTGTTTTGCCCAGTGAGGATAAAATGA-----------TAGAA----------------ATACAATCA-----------AACAG-----GATGTTTTGGTAGGTAACAGTG-----------------------------------------------------TTTTATTCCCTG--------AAAAA--ATGAAAAA----------------------------------------TTAGGTTATC-----------------------------------------------------GTAATTTTTTAATTA----------------ACAGCAGTGAATATGATGTGTAA---AATAAGTTATCCAT-CAATAATTTATGTCAGGAGTCGTGCAGCAGAAAGATTCTTATCCA----------TCTTATCCATCACATAAACCATG--TGGT-TCTGT---------ACACTTG-ATTCAAC-----------------------A---------AGACCCTTTGGAGAATGAGGTTCC-TTTTGTTTTC--TGGTTTTCTTTTTATT---TC---ATTTTTTGATCAATATTTGATAGTAAAGCCAGGGAGATGGGACaggaaacttagatgtcatctagttcaatatccttgatttacacatg-aaaaaattgggacag-agggaaatgaa--gacttccccatatcaggtaactggctaaag--ggagctatgctaggtaaaacca------------agatctcctgac-ttctggtttaccagaaagtgttc
i saiBol1.JH378357         I 327 C 0
s cebCap1.NW_016107755v1     152156 578 -   1771730 agaaaatggcagagctaggactcgaacccaggcagtcttgctgctgagccctggttcttaatcacAACATTAATGCTGGTTCTGCCCAGTGAGGATAAAATGA-----------GAGAA----------------ATACAATCA-----------AACAG-----GATGTTTTGGTAGGTAACAGTG-----------------------------------------------------TTTTTTTCCCTG--------AAAAA--ATGAAAAA----------------------------------------TTAGATTATT-----------------------------------------------------GTAATTTTTTAATTA----------------ACAGCAGTGAATATGATATGTAA---AATAAGTTATCTATACAATAATTTATGTCAGGAGTCGTGCAGTAGAAAGAC-------------------TCTTATCCATCACATAAACCATA--TGTT-TCTGTACCATTAAGACACTTG-ATTCAAC-----------------------A---------AGACCCTTTGGAGAATGAGGTTCC-TTTGTTTTCT--GGGTTCTCTTTTTATT---TC---ATTTTTTGATCAATATTTGATAGTAAAACCAGGGAGATGGGACaggaaacttagatgtcacctaattcaatatccttggtttacacatg-aaaaaattgggacag-agggaaatgaa--gacttccccatatcaggtaactggctaatg--ggagctatgctaggtaaaacca------------ggatctcctgac-ttctggtttaccagaaagtgttc
i cebCap1.NW_016107755v1   I 354 C 0
s aotNan1.NW_018509740v1     211030 602 -    457564 agaaaatggcagagccagagcttgaacccaggcagtctggctgctgagccctggttcttaatcacgacactaATGCTTGTTCTGCCCAGTGAGGATAAAAGGA-----------GAGAAAC--------------ATGCAATCA-----------AACAG-----GATGTTTTGGTAGGTAACAGTG-----------------------------------------------------TTTTCTCCCCTG---------AAAA--ATGAAAAA----------------------------------------TTAGATTATT-----------------------------------------------------GTAACTTTTTAATTA----------------ACAACAGTGAATATGATGTGCAAAATAATAAGTTATCTATACAATAATTTATATCAGGATTCGTGCAGCGGAAAGATTCTTATCCATCACATAAACTTTTATCCATCATATAAACCATA--TGTT-TCTGTACCATTAAGACACTTG-GTTCAAC-----------------------A---------AGACCCTTTGGAGAATGAGGTTCCTTTTGTTTTCT--GGGTTCTCTTTTTATT---TC---GTTTTTTGATCAATATTTGATAGTAAAGCCTGGTAGATGGGACaggaaacttagatgtcatctagttcaatatccttgatttacacatg-aaaaaactgggacag-agggaaatgaa--gacttctccatatcaggtaactggctacag--ggagctatgctaggtaaaacca------------agatctcctgac-ttctggtttaccagaaagtgttc
i aotNan1.NW_018509740v1   I 345 C 0
s otoGar3.GL873550            30884 633 +  18854210 aggaaatagcagagtcaagactcaaacccaagcactgtggttgccacgcccttgttcttgatca---catttatactTGTTCTGTCAAATGAGGATAAAATGA-----------GAAAACC--------------ATA----TA-----------AACAG-----AATGCTTTGTTGAGGGAAGAGG-----------------------------------------------------ATTTTCCCAAAA---------AAAAAGATGAAACATAGGAGattattattattattaaattagatttaaaattatttagattatt-----------------------------------------------------atcatattgaaattattttaaattattatatttaaattttaataCAATGTTTAA---GGTAGATTACCTATATAAA-------------------GCAGTAGAAAGATTCCCATGTA--------ACTTTCATTTATCAAATTAACTACT--TGATGTCTATACTATTAGTATATTTG-GTTCAACATCATCCTATTAAGAATTCTCAAA---------AGGCCCTT--GGGAATGATGTTCT-CTTTGTTCCT--GTGTTCCCATTTCCTT---TG-------TTTGA-AAATGTTTGATGATAAGGCCAGGGTGGTAGGATaggaaacttata-atcacctacttcaaacttcatgatttaatagtgaaaaaaattgagacagaagagaaatgaagtgacttcccaatatcaaataacctgcaaaaggcggagctatgctaggtca-----------------------cctgac-ttctgatttacctggaagtcttc
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57787659 715 -  94987271 agaaagtagcagaatcaagactcaaatctaaggagcctTA------------AGTTCTTATTCA---CATTGAAACTTTCTCTGCCTGGTGAGGAT-AAGCAAGGTGTTGTATTGGGAGACGGATTACTTCCTGAAAAAAACTA-----------AAAAGCTTGTGATTGATCGATTGGGGgtgggggtgcgtgccacatcatacgtgtgaaggtcagaggacaacttgaaggagtcagttctcttccactatatggatcccaga--gttgaaac----------------------------------------tcaggccatcaggcagcaagggcctctacttggtaagacatcttgccaggccAGAGGGCTGTGGTTCTTTTTAAATTA----------------AAAGCACTAAGTGTGTT---------CACAAGTTATATATGTGATA---TCTGTCATAAAGCATGCA-TAGAAAGACTCTTGTGCA--------AGTTTTATCTATTCTATCAACCATGATAATT-TCTGTATCCCCCAGATTGTTGAATTCAGT-----------------------ATCAATACCTAGAGCCTT--GAAATCGAGGTCCT-TTTTGTTTCTTGCA--TTTCTTTTAAAT---TT------GTTTGAGAAACAGTTGACAGGAAAGCCCATGAT---------AGACCCAAGAAGTCA---AATTCCACCACC---ATTTACACATG-ACAAACTTGAAGGAG-AATGATATGAAATGATTTCTACATCTCAAATAACCAACCAGAC--ACTGTTGTTTTAGCTGAGTACAGTTTGAGGCCTGAGGGCTCCTCAT-TTCTGGTCTGATAGGAAGTATTC
i mm10.chr17               C 0 I 1118
e proCoq1.NW_012152574v1     501041 6590 +    730504 I

a score=1356677.000000
s hg38.chr6_GL000254v2_alt   817769 144 +   4827813 TTTTTTTCTACCCAACTTATTCCTGATTTAAAGGCTAGTATACGTGTGCTGATCTCCCCT--------------------------CAGTGGGAGGGGCATGGACGTTGGGAGTAGTCTCTATTCACAACAAATTAAAAATCAGTAATCAGCCGTATAATGGGTTGtgtt
s panTro5.chr6             29780593 144 + 175400573 TTTTTTTCTACCCAACTGATTCCTGATTTAAAGGCTAGTATACGTGTGCTGATCTCCCCT--------------------------CAGTGGGAGGGGCATGGACGTTGGGAGTAGTCTCTATTCACAACAAATTAAAAATCAGTAATCAGCCGTATAATGGGTTGtgtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30015202 144 + 173848474 tttTTTTCTACCCAACTGATTCCTGATTTAAAGGCTAGTATACGTGTGCTGATCTCCCCT--------------------------CAGTGGGAGGGGCATGGACGTTGGGAGTAGTCTCTATTCACAACAAATTAAAAATCAGTAATCAGCCGTATAATGGGTTGtgtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5818650 142 +   6154872 TTTTTTTCTA-CCAACTGATTCCTGATTTAAAGGCTAGTATACGTGTGCTGATCT-CCCT--------------------------CAGTGGGAGGGGCATGGAAGTTGGGATTAGTCTCTATTCACAACAAATTAAAAATCAGTAATCAGCCGTATAATGGGTTGtgtt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74544842 141 + 122973662 TTTTTTTCTACCCAACGGATTCCTGATTTAAAGGCTAGTATGCGTG---TGATCTCCCTT--------------------------CAGTGGGAGGGGCATGGACGTTGGGAGTAGTCTCTATTCACAACAAATTAAAAATCAGTAATCAGCAGTATAATGGGTTGtgtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30010199 142 + 172585720 tttTTTTCTACCCAACTGATTCCTGATTTAAAGGCTAGTATGTATGTGCTGATCTCCCCT--------------------------CAGTGGGAGGGGCATGGACGTTGGGAGTGGTCTCTATTCACAACAAATTAAAAATCGGTAATCAGCAGTATAATGGGT--tgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29674095 142 - 170955103 TTTTTTTCTACCCAACTGATTCCTGATTTAAAGGCTAGTATGTATGTGCTGATCTCCCCT--------------------------CAGTGGGAGGGGCATGGACGTTGGGAGTGGTCTCTATTCACAACAAATTAAAAATCGGTAATCAGCAGTATAATGGGT--tgtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2720261 140 -   2996164 tttTTTTCTACCCAACTGATTCCTGATTTAAAGGCTAGTATGTATGTGTTGATCTCCCCT--------------------------CAGTGGGAGGGGCATGGACGTTGGGAGTGGTCTC--TTCACAACAAATTAAAAATCGGCAATCAGCAGTATAATGGGT--tgtt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     469562 144 +    766320 tttTTTTCTACCCAACCGATTCCTGATTTAAAGGCTACTATGCATGTGCTGATCTCCCCT--------------------------CAGTGGGAGGGGCATGGACGTTGGGAGTGGTCTCTATTCACAACAAATTAAAAATCGGTAATCAGCAGTATAATGGGTTGtgtt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28927717 144 -  71996105 tttTTTTCTACCCAACCGATTCCTGATTTAAAGACTAGTATGCATGTGCTGATCTCCCCT--------------------------CAGTGGGAGGGGCATGGACGTTAGGAGTGGTCTCTATTCACAACAAATTAAAAATCAGTAATCAGCAGTATAATGGGTTGtgtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     103465 144 +    290775 tttTTTTCTACCCAACCCATTCCTGATTTAAAGGCTAGTATGCATGTGCTGATCTCCCCT--------------------------CAGTGGGAGGGGCATGGACGTTGGGAGTGGTCTCTATTCACAACAAATTAAAAATCGGTAATCAGCAGTATAATGGGTTGtgtt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2551753 144 -   3067355 tttTTTTCTACCCAACGGATTCCTGATTTAAAGGCTAGTATGCATGTGCTGATCTCCCCT--------------------------CAGTGGGAGGGGCATGGAGGTTGGGAGTAGTCTCTGTTCACAACAAATTAAAAATCAGTAATCAGCAGTATAACGGGTTGtgtt
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           150279 143 -    242197 -tttttcctacccaactgattcCTGATTTAAAGGCTAGTATGCATGTGCTGATCTCCCCT--------------------------CAGTGGGAGGGGCATGGATATTGGGTGTATTCTCTATTCACAACAAATTAAAAATCAGTAATCAGCAGTATAATGGGTTGTGTT
i saiBol1.JH378357         C 0 I 312
s cebCap1.NW_016107755v1     152734 143 -   1771730 -tttttcctacccaactgactcCTGATTTAAAGGCTAGTATGCATGTGCTGATCTCTCCT--------------------------CAGTGGGAGGGGCATGGACATTGGGAGTATTCTCTATTCACAACAAATTAAAAATCAGTAATCAGCAGTATAATGGGTTGtgtt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     211632 143 -    457564 -tttttcctacccaactgATCCCTGATTTAAAGGCTAGTATGCATATGCTGATCTCCCCT--------------------------CAGTGGGAGGGGCATGGACATTGGGAGTATTCTCTATTCACAACAAATTAAAAATCAGTAATCAGCAGTATAATGGGTTGtgtt
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            31517 169 +  18854210 -tttcctctactcagctgactctTGATTTAAGGGCTAGTGTGCATGTGTTAATCTGTGCTGAGCACAACCATCACACTAGACTGTACAGCAAGAGAAGCCTGAACATTGGAAGCAACTTCTATTCACAACAGATTAGAAACAAGTAGGTAACAGTATGATGGGTTGTAGC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57788374 1118 -  94987271 I
e proCoq1.NW_012152574v1     501041 6590 +    730504 I

a score=950399.000000
s hg38.chr6_GL000254v2_alt   817913  97 +   4827813 agaaagtaaactaaggcccaataaaatatttaagagtttatttg---agcagtgatccatgaattgggcagctccaagccagaagtggctagggagctcc
s panTro5.chr6             29780737  97 + 175400573 agaaagtaaactaaggcccaataaaatatttaagagtttatttg---agcagtgatccatgaattgggcagctccaagccagaagtggctagggagctcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30015346  97 + 173848474 agaaagtaaactaaggcccaataaaatatttaagagtttatttg---agcagtgatccatgaattgggcagctccaagccagaagtggctagggagctcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5818792  97 +   6154872 agaaagtaaactaaggcccaataaaatatttaagagtttatttg---agcagtgatccatgaattgggcagctccaagccagaagtggctagggagctcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74544983  97 + 122973662 agaaagtaaacaaaggcccaataaaatatttaagagtttatttg---agcagtgatccatgaattgggcagctccaagccagaagtggctagggagctcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30010341  97 + 172585720 agaaagtaaactaaggcccaataaaatatttaagagtttatttg---agcagtgattcctgaattgggcagctccaagccagaagtgactagggagctcc
i rheMac8.chr4             C 0 I 10
s macFas5.chr4             29674237  97 - 170955103 agaaagtaaactaaggcccaataaaatatttaagagtttatttg---agcagtgattcctgaattgggcagctccaagccagaagtgactagggagctcc
i macFas5.chr4             C 0 I 10
s macNem1.NW_012011356v1    2720401  97 -   2996164 agaaagtaaactaaggcccaataaaatatttaagagtttatttg---agcagtgattcctgaattgggcagctccaagccagaagtgactagggagctcc
i macNem1.NW_012011356v1   C 0 I 10
s cerAty1.NW_012002711v1     469706  97 +    766320 agaaagtaaactaaggcccagtaaaatatttaagagtttatttg---agcagtgattactgaattgggcagctccaagccagaagtgactagggagctcc
i cerAty1.NW_012002711v1   C 0 I 553
s chlSab2.chr17            28927861  97 -  71996105 agaaagtaaactaaggcccaataaaatatttaagagtttatttg---agcagtgattcctgaattgggcagctccaagccagaagtgactagggagctcc
i chlSab2.chr17            C 0 I 10
s manLeu1.NW_012099233v1     103609  97 +    290775 agaaagtaaactaaggcccagtaaaatatttaagagtttatttg---agcagtgattactgaattgggcagctccaagccagaagtgactagggagctcc
i manLeu1.NW_012099233v1   C 0 I 1797
s colAng1.NW_012115566v1    2551897  97 -   3067355 agaaagtaaactaaggcccaataaaatatttaagagtttatttg---agcagtgatccctgaattgggcagctccaagccagaaatgactagggagctcc
i colAng1.NW_012115566v1   C 0 I 10
s saiBol1.JH378357           150734  97 -    242197 agaaagtaaactgaggcccaataaaatatttaagcttttacttg---agcagtgattcatgaattgggcagctcaaagtcagaagtggctagggagctcc
i saiBol1.JH378357         I 312 C 0
s cebCap1.NW_016107755v1     152877  93 -   1771730 agaaagtaaactaaagaccaataaaatatttg----tttatttc---agcagtgattcatgaattgggcagctcgaagtcagaagtgggtagggagctcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     211775  97 -    457564 agaaagtaaactaaggcccaataaaatatttaagagtttatttg---agcagtgattcatgaattgggcagcttgaagtcagaagtggctagggagctcc
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            31686 100 +  18854210 agaaagtaacctaaggtacaataaatttgtaaagagtttatttgaacaacagcaattcacgaatcatgcaaatccaaatcagaagttgctaggaagctcc
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57788374 1118 -  94987271 I
e proCoq1.NW_012152574v1     501041 6590 +    730504 I

a score=326628.000000
s hg38.chr6_GL000254v2_alt   818010 85 +   4827813 ccagagaga-----------acatgaggaggaggctttt-tagga--caaatagata---aaagcaaagataatatttcattggttacagttatacagttac
s panTro5.chr6             29780834 85 + 175400573 ccagagaga-----------acatgaggaggaggctttt-tagga--caaatagata---aaagcaaagataatgtttcattggttacagttatacagttac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30015443 85 + 173848474 ccagagaga-----------acatgaggaggaggctttt-tagga--caaatagata---aaagcaaagataatgtttcattggttacagttatacagttac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5818889 85 +   6154872 ccagagaga-----------acatgaggaggaagctttt-tagga--caaatagata---aaagcaaagataatgtttcattggttacggttatacagttac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74545080 74 + 122973662 ccagagaga-----------acatgaggag---gctttt-tagga--caaatagata---aaagcaaagataatatttcattggttacagttat--------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30010448 78 + 172585720 ctgtggagaagctttctaggacatgaggaggaggctttt-tagga---aaacaggt----aaagcaaagataatatttcattggtt----------------
i rheMac8.chr4             I 10 C 0
s macFas5.chr4             29674344 78 - 170955103 ctgtggagaagctttctaggacatgaggaggaggctttt-tagga---aaacaggt----aaagcaaagataatatttcattggtt----------------
i macFas5.chr4             I 10 C 0
s macNem1.NW_012011356v1    2720508 78 -   2996164 ctgtggagaagctttctaggacatgaggaggaggctttt-tagga---aaacaggt----aaagcaaagataatatttcattggtt----------------
i macNem1.NW_012011356v1   I 10 C 0
s chlSab2.chr17            28927968 93 -  71996105 ctgtggagaagctttctaggacatgaggaggaggctttt-tagga---aaacaggta---aaagcaaagataatatttcattggttacagttatatagtt--
i chlSab2.chr17            I 10 C 0
s colAng1.NW_012115566v1    2552004 80 -   3067355 ctgtggagaagctttctaggacatgaggaggaggctttt-tagga--caaacaggta---aaagcaaagataatatttcattgatt----------------
i colAng1.NW_012115566v1   I 10 C 0
s saiBol1.JH378357           150831 66 -    242197 acagagaga-----------acatgaggagaaggatttt-tag----aacacagata---aaagcaaagataatatttcattggt-----------------
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     152970 66 -   1771730 acagagaga-----------acatgaggaggaggatttt-taa----aacacagata---aaagcaaagataatatttcattggt-----------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     211872 70 -    457564 acagagaga-----------acatgaggaggaagatttt-tagaacaaacacaaata---aaagcaaagataatatttcattggt-----------------
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            31786 69 +  18854210 -ttggagga-----------attcaagagggagacttttatatga--caaacacagaaataaagctaagaaaatatttggtgg-------------------
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57788374 1118 -  94987271 I
e proCoq1.NW_012152574v1     501041 6590 +    730504 I
e manLeu1.NW_012099233v1     103706 1797 +    290775 I
e cerAty1.NW_012002711v1     469803 553 +    766320 I

a score=1457829.000000
s hg38.chr6_GL000254v2_alt   818095 184 +   4827813 acagttatacagttgccttatttggtctatcccatgaggaagtcc-tagttac-taattacgtttttgttggctgcttctgattggttgagcttaagttctgtgtttctttaacataggcatttacaagaaataccacaaataaagtttcagacatgcttgcaaatcaagcaaggttaaggtcact
s panTro5.chr6             29780919 184 + 175400573 acagttatacagttgccttatttggtctatcccatgaggaagtcc-tagttac-taattacgtttttgttggctgcttctgattggttgagcttaagttctgtgtttctttaacataggcatttacaagaaataccacaaataaagtttcagacatgcttgcaaatcaagcaaggttaaggtcact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30015528 184 + 173848474 acagttatacagttgccttatttggtctatcccatgaggaagtcc-tagttac-taattacgtttttgttggctgcttctgactggttgagcttaagttctgtgtttctttaacataggcatttacaagaaataccacaaataaagtttcagacatgcttgcaaatcaagcaaggttaaggtcact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5818974 184 +   6154872 acagttatacagttgccttatttggtctatcccatgaggaagtcc-tagttac-taattacgtttttgttggctgcttctgattggttgagcttaagttctgtgtttctttaacataggcatttacaagaaataccacaaataaagtttcagacacgcttgcaaatcaagcaaggttaaggtcact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74545154 184 + 122973662 acagttatacagttgccttatttggtctatcccatgaggaagtcc-tagttac-taattacgtttttgttggctgcttctgatcggttgagcttaagttctgtgtttctttaatataggcatttacaagaaataccacaaataaagtttcagacatgcttgcaaatcaagcaaggttaaggtcact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30010526 185 + 172585720 acagttacacagttgccttatttggtctatcccatgaggaagtcc-tagttatataattatgtttttgttggctgcttctgattggttgagcttaagttctatgtctctttaatataggcatttacaagaaatagcacaaataaagtttcagacatgcttgcgaatcaagcaaggttaatgttact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29674422 185 - 170955103 acagttacacagttgccttatttggtctatcccatgaggaagtcc-tagttatataattatgtttttgttggctgcttctgattggttgagcttaagttctatgtctctttaatataggcatttacaagaaatagcacaaataaagtttcagacatgcttgcgaatcaagcaaggttaatgttact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2720586 185 -   2996164 acagttacacagttgccttatttggtctatcccatgaggaagtcc-tagttatataattatgtttttgttggctgcttctgattggttgagcttaagttctatgtctctttaatataggcatttacaagaaatagcacaaataaagtttcagacatgcttgcgaatcaagcaaggttaatgttact
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     470356 185 +    766320 acagttatacagttgccttatttggtctatcccatgaggaagtcc-tagttatataattaagtttttgttggctgcttctgattggttgagcttaagttctatgtttctttaatataggcatttacaagaaatggcacaaataaagtttcagacatgcttgcgaatcaagcaaggttaatgttact
i cerAty1.NW_012002711v1   I 553 C 0
s chlSab2.chr17            28928061 171 -  71996105 --------------gccttatttggtctatcccatgaggaagtcc-tagttatataattatgtttttgttggctgcttctgattggttgagcttaagttctatgtttctttaatataggcatttacaagaaatagcacaaatgaagtttcagacatgcttgcgaatcaagcaaggttaatgttact
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2552084 185 -   3067355 acagttatacagttgccttatttggtctatcccatgaggaagtcc-tagttatataattatgtttttgttggctgcttctgattggttgagcttaagttctatgtttctttaatataggcatttacaagaaatagcacaaataaagtttcagacatgcttgcgaatcaaacaaggttaatgttact
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           150897 177 -    242197 --agttatatagttgccttatttggtctatcccatgaggaagtccttggttacataattatg-ttttgttgactgcttctgattggttgagcttaagttc--tgtttcttttgtataggcatttacaagacataacaca----aagtttcagacatgcttgcaaatcaagcaaggttaaggtcact
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     153036 177 -   1771730 --agttatatagttgccttatttggtctatcccatgaggaagtctttggttatataattatg-ttttgttgactgcctctgattggttaagcttaagttc--cgtttcttttatataggcatttacaagacataacaca----aagtttcaggcatgcttgcaaatcaagcaaggttaaggtccct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     211942 179 -    457564 --agttatacagttgccttatttggtttatcccatgaggaagtccgtggttatatgattatg-ttttgttgactgcttctgattggttgagcttaagttctgtgtttctttaatataggcatttacaagacataacaca----aagtttcagacatgcttgcaaatcaagcaaggttaaggtcact
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            31855 182 +  18854210 -cagttacatacttgtctcatttggtctatcccatatgaagtccc-tggttacagaattata--tttgtccactgtttctgatcggttgagtttaagttctgtttttcttcaaaataggaatttatatgaaaaaatgcaaattaaatggcacttctgtttgcaaatcaggcatggttagggtcact
i otoGar3.GL873550         C 0 I 34806
e mm10.chr17               57788374 1118 -  94987271 I
e proCoq1.NW_012152574v1     501041 6590 +    730504 I
e manLeu1.NW_012099233v1     103706 1797 +    290775 I

a score=2281471.000000
s hg38.chr6_GL000254v2_alt   818279 303 +   4827813 taggaggcccaactggctctgtctgctcaaggattcttctggcctcgtctcca-ttttaCATGAACTgttgcataaataaacacagagtacctgaaacaacggaggtgatcattctgcctaccgagtgttggccacgccaagcttggagtgttgctcttattcttaggGAGTTTATTTTTAAGTAATCTCATCTGTAAATGGGATTACAATCCACAAACTGACCTTGTATATGATTCCATTCCTTCTCCCAGCCCAGCCCCACACTCCAAGGTTTTCCCTTTGCTTATAA-G-GGGTAGTCACCCT
s panTro5.chr6             29781103 303 + 175400573 taggaggcccaactggctctgtctgctcaaggattcttctggcctcgtctcca-ttttaCATGAACTgttgcataaataaacacagagtacctgaaacaacggaggtgatcattctgcctaccgagtgttggccaggccaagcttggagtgttgctcttattcttaggGAGTTTATTTTTAAGTAATCTCATCTGTAAATGGGATTACAATCCACAAACTGACCTTGTATATGATTCCATTCCTTCTCCCAGCCCAGCCCCACACTCCAAGGTTTTCCCTTTGCTTATAA-G-GGGTAGTCACCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30015712 303 + 173848474 taggaggcccaactggctctgtctgctcaaggattcttctggcctcgtctcca-ttttaCATGAACTgttgcataaataaacacagagtacctgaaacaacggaggtgatcattctgcctaccgagtgttggccaggccaagcttggagtgttgctcttattcttaggGAGTTTATTTTTAAGTAATCTCATCTGTAAATGGGATTACAATCCACAAACTGACCTTGTATATGATTCCATTCCTTCTCCCAGCCCAGCCCCACACTCCAAGGTTTTCCCTTTGCTTATAA-G-GGGTAGTCACCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5819158 302 +   6154872 taggaggcccgactggctctgtctactcaaggattcttctggcctcgtctcca-ttttaCATGAACTgttgcataaataaacacagagtacctgaaacaacggaggtgatcattctgcctaccgagtgttggccaggccaagcttggagtgttgctcttattctTACGGAGTTTATTTTTAAGTAATCTCATCTGTAAATGGGATTACAATCCACAAACT-ACCTTGTATATGATTCCATTCCTTCTCCCAGCCCAGCCCCACACTCCAAGGTTTTCCCTTTGCTTATAA-G-GGGTAGTCACCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74545338 301 + 122973662 taggaggcccaactggttctgtctgctcaaggattcttctggcctcgtctcca-ttttaCATGAACTgttgcataaataaacacagagtacctgaaataacggaggcgatcattctgcctaccgagtgttggccaggccaagcttggagtgttgctcttattcttaggg-gtttatttttaagTAATCTCATCTGTAAATGGGATTACAATCCACAAACTGACCTTGTATATGCTTCCATTCCTTCTCCCAGCCCAGCCCCACACTCCAAGGTTTTCCCTTTGCTTATAA-G-GGGTAGTCACCC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30010711 304 + 172585720 taggaggcccaactggctctgccagctcaaggattattctggcctggtctcca-ttttaTATGAACAgttgcataaataaacacagagtacctgaaacaacggaggtgatcattctgcctaccgaatgttggccaggccaagcttggagtgttgctcttattcttaggGGGATTATTATTAAGTAATCTCATCTGTAAACGGGATTACAATCCACAAACTAACCTTGTATATGCTTCCATTCCCTCGCCCAACCCAGCCCCACACTCCAAGGTTTTTCCTTTGCTTATAA-GAGGGTAGTCACCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29674607 304 - 170955103 taggaggcccaactggctctgccagctcaaggattattctggcctggtctcca-ttttaTATGAACAgttgcataaataaacacagagtacctgaaacaacggaggtgatcattctgcctaccgaatgttggccaggccaagcttggagtgttgctcttattcttaggGGGATTATTATTAAGTAATCTCATCTGTAAACGGGATTACAATCCACAAACTAACCTTGTATATGCTTCCATTCCCTCGCCCAACCCAGCCCCACACTCCAAGGTTTTTCCTTTGCTTATAA-GAGGGTAGTCACCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2720771 304 -   2996164 taggaggcccaactggctctgccagctcaaggattattctggcctggtctcca-ttttaTATGAACAgttgcataaataaacacagagtacctgaaacaacggaggtgatcattctgcctaccgaatgttggccaggccaagcttggagtgttgctcttattcttaggcgGATTATTATTAAGTAATCTCATCTGTAAACGGGATTACAATCCACAAACTAACCTTGTATATGCTTCCATTCCCTCGCCCAACCCAGCCCCACACTCCAAGGTTTTTCCTTTGCTTATAA-GAGGGTAGTCACCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     470541 305 +    766320 taggaggcccaactggctctgccagctcaaggattcttctggcctggtctcca-ttttaCATGAACAgttgcataaataaacacagagtacctgaaacaacggaggtaatcattctgcctaccgaatgttggcaaggccaatcttggagtgttgctcttattcttaggGGGATTATTATTAAGTAATCTCATCTGTAAACGGGATTACAATCCACAAACTAACCTTGTATATGCTTCCATTCCTTCGCCCAACCCAGCCCCACACTCCAAGGTTTTTCCTTTGCTTATAAGGGGGGTAGTCACCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28928232 304 -  71996105 taggaggcccaactggctctgccagctcaaggattcttctggcctggtctcca-ttttaTATGAACAgttgcataaataaacacagagtacctgaaacaacggaggtgatcattctgcctaccgaatgttggccaggccaagcttggagtgttgctcttattcttaggGGGATTATTATTAAGTAATCTCATCTGTAAACGGGATTACAATCCACAAACTAACCTTGTATATGCTTCCATTCCCTCGCCCAACCCAGCCCCACACTCCAAGGTTTTTCCTTTGCTTATAA-GAGGGTAGTCACCTT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2552269 305 -   3067355 taggaggcccaactggctctgccagctcaagaatacttctggcctggtctccattttTACATGAACAgttgcataaacaaacatagagtacctgaaacaacggaggtgatcattctgcctaccgaatgttggccaggccaagcttggagtgttgctcttattcttaggGGGATTATTATTAAGTAATCTCATCTGTAAACGGGATTACAATCCACAAACTAACCTTGTATACGCTTCCATTCCTTCGCCCAACCCAGTCCCACACTCCAAGGTTTTTCCTTTGCTTATAA-GGGGGTAGTCACCCT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           151074 303 -    242197 taggaagcccaactggatctatctgctcagggattcttctggtctagtctcca-ttttaCATGAACAgttgcataaataaaagcagagtacctgaaacaacagaagtgatcattttgtctaccgagtgttggctacgccaagcttggaatgttgcTCTTATTCGTAGGGGGATTATTCTTGAGTAATCTCATCCATGAATGGGATTACAATTCACAAACTAACCTTGCATATGCTTCCATTCCTTCGCCCAGCCCATTCCCACACTCCAAGGTTTTTCCTTTGCTTATAA-G-GGGTACTCACCCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     153213 303 -   1771730 taggaggcccaactggatctatctgctcagggattcttctggtctggtctcca-ttttaCATGAACAGTTGCATAAATAAAAGCAGAGTACCTGAAACAACAGAGGCTATCATTCTGTCTACCGACTGTTGGCTACGCCAAGCTTGGAATGTTGCTCTTATTCTTAGGGGGATTATTCTTAAGTAATCTCATCTGTGAATGGGATTACAATTCACAAACTAACCTTGCATAGGCTTCCATTCCTTCGCCCAGCCCATTTCCACACTCCAAGGTTTTTCCTTTGCTTATAA-G-GGGTACTCACCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     212121 303 -    457564 taggaggcccaactgtatctatctgctcagggattcttctggtctggtctcca-ttttaCATGAACAgttgcataaataaaagcagagtacctgaaacaacagaggtgatcattctgtctaccaagcgttggctaggccaagcttggaatattgctcttattcttaggGGGATTATTCTTGAGTAATCTCGTCTGTGAATGGGATTACAATTCACAAACTAACCTGGCGTATGTTTCCATTCCTTCGCCCAGCCCATTCCCACACTCCAAGGTTTTTCCTTTGCTTATAA-G-GGGTAGTAACCCG
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57788374 1118 -  94987271 I
e proCoq1.NW_012152574v1     501041 6590 +    730504 I
e otoGar3.GL873550            32037 34806 +  18854210 I
e manLeu1.NW_012099233v1     103706 1797 +    290775 I

a score=404238.000000
s hg38.chr6_GL000254v2_alt   818582 45 +   4827813 TTTTTATTTCGACCTTCCAAACATTCTGGGAGTTTTCCTCCTTTA
s panTro5.chr6             29781406 45 + 175400573 TTTTTATTTCGACCTTCCAAACATTCTGGGAGTTTTCCTCCTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30016015 45 + 173848474 TTTTTATTTCGACCTTCCAAACATTCTGGGAGTTTTCCTCCTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5819460 45 +   6154872 TTTTTATTTCGACCTTCCAAACATTCTGGGAGTTTTCCTCCTTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74545639 45 + 122973662 TTTTTATTTCGACCTTCCAAACATTCTGGGAGTTTTCCTCCTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30011015 45 + 172585720 TTTTTATTTCGACATTCCAAACATTCTGGGAGTTTTCCTCCTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29674911 45 - 170955103 TTTTTATTTCGACATTCCAAACATTCTGGGAGTTTTCCTCCTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2721075 45 -   2996164 TTTTTATTTCGACCTTCCAAACATTCTGGGAGTTTTCCTCCTTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     470846 45 +    766320 TTTTTATTTCGACCTTCCAAACATTCTGGGAGTTTTCCTCCTTTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28928536 45 -  71996105 TTTTTATTTCGACCTTCCAAACATTCTGGGAGTTTTCCTCCTTTA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2552574 45 -   3067355 TTTTTATTTCGACCTTCCAAACATTCTGGGAGTTTTCCTCCTTTA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           151377 45 -    242197 TTTTTATTTCGGCCTTCCAAACATTCTGGGAGTTTTCCTCCTTTA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     153516 45 -   1771730 TTTCTATTTCGACCTTCCAAACATTCTGGGAGTTTTCCTCCTTTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     212424 45 -    457564 TTTTTATTTCGACCTTCCAAACATTCTGGGAGTTTTCCTCCTTTA
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57789492 43 -  94987271 TTTTTGTCTCG-CCTTCCGAACCTTCTTGGAGTTTTCCCCCTCA-
i mm10.chr17               I 1118 C 0
e proCoq1.NW_012152574v1     501041 6590 +    730504 I
e otoGar3.GL873550            32037 34806 +  18854210 I
e manLeu1.NW_012099233v1     103706 1797 +    290775 I

a score=564097.000000
s hg38.chr6_GL000254v2_alt   818627 58 +   4827813 GGCCAACTACAGCGCAGAGGAGCGCTTTCTCCTGCTGGGTTTCTCCGACTGGCCTTCC
s panTro5.chr6             29781451 58 + 175400573 GGCCAACTACAGCGCAGAGGAGCGCTTTCTCCTGCTGGGTTTCTCCGACTGGCCTTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30016060 58 + 173848474 GGCCAACTACAGCGCAGAGGAGCGCTTTCTCCTGCTGGGTTTCTCCGACTGGCCTTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5819505 58 +   6154872 GGCCAACTACAGCGCAGAGGAGCGCTTTCTCCTGCTGGGTTTCTCCGACTGGCCTTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74545684 58 + 122973662 GGCCAACTACAGCACAGAGGAGCGCTTTCTCCTGCTGGGTTTCTCCGACTGGCCTTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30011060 58 + 172585720 GGCCAACTACAGCACAGAGGAGCGCTTCCTCCTGCTGGGTTTCTCCGACTGGCCCTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29674956 58 - 170955103 GGCCAACTACAGCACAGAGGAGCGCTTCCTCCTGCTGGGTTTCTCCGACTGGCCCTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2721120 58 -   2996164 GGCCAACTACAGCACAGAGGAGCGCTTCCTCCTGCTGGGTTTCTCCGACTGGCCCTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     470891 58 +    766320 GGCCAACTACAGCACAGAGGAGCGCTTCCTCCTGCTGGGTTTCTCCGACTGGCCCTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28928581 58 -  71996105 GGCCAACTACAGCACAGAGGAGCACTTCCTCCTGCTGGGTTTCTCCGACTGGCCCTCC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2552619 58 -   3067355 GGCCAACTACAGCACAGAGGAGCGCTTCCTCCTGCTGGGTTTCTCCGACTGGCCCTCC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           151422 58 -    242197 GGCCAACTACAGCACAGAGGAGCGCTTCCTCCTGCTGGGTTTCTCCGACTGGCCCTCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     153561 58 -   1771730 GGTCAACTACAGCACAGAGAAGCGCTTCCTCCTGCTGGGTTTCTCCGACTGGCCCTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     212469 58 -    457564 GGCCAACTACAGCACAGAGGAGCGCTTCCTCCTGCTGGGTTTCTCCGACTGGCCCTCC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            66843 58 +  18854210 GGGCAACCAAAGCTCCCCAGAGGGCTTCCTTCTTCTGGGCTTCTCTGAACACCCAGGG
i otoGar3.GL873550         I 34806 C 0
s mm10.chr17               57789535 58 -  94987271 GGCTAACCACAGCTCAGCGGAGCGCTTCCTACTGCTGGGTTTCAGCGACTGGCCCTCT
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     501041 6590 +    730504 I
e manLeu1.NW_012099233v1     103706 1797 +    290775 I

a score=2996332.000000
s hg38.chr6_GL000254v2_alt   818685 290 +   4827813 CTGCAGCCGGTCCTCTTCGCCCTTGTCCTCCTGTGCTACCTCCTGACCTTGACGGGCAACTCGGCGCTGGTGCTGCTGGCGGTGCGCGACCCGCGCCTGCACACGCCCATGTACTACTTCCTCTGCCACCTGGCCTTGGTAGACGCGGGCTTCACTACTAGCGTGGTGCCGCCGCTGCTGGCCAACCTGCGCGGACCAGCG-----CTCTGGCTGCCGCGCAGCCACTGCACGGCCCAGCTGTGCGCATCGCTGGCTCTGGGTTCGGCCGAATGCGTCCTCCTGGCGGTGATGGC
s panTro5.chr6             29781509 285 + 175400573 CTGCAGCCGGTCCTCTTCGCCCTTGTCCTCCTGTGCTACCTCCT-----TGACTGGCAACTCGGCGCTGGTGCTGCTGGCGGTGCGCGACCCGCGCCTGCACACGCCCATGTACTACTTCCTCTGCCACCTGGCCTTGGTAGACGCGGGCTTCACCACTAGCGTGGTGCCGCCGCTGCTGTCCAACCTGCGCGGATCAGCG-----CTCTGGCTGCCGCGCAGCCACTGCACGGCCCAGCTGTGCGCATCGCTGGCTCTGGGTTCGGCCGAGTGCGTCCTCCTGGCGGTGATGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30016118 285 + 173848474 CTGCAGCCGGTCCTCTTCGCCCTTGTCCTCCTGTGCTACCTCCT-----TGACTGGCAACTCGGCGCTGGTGCTGCTGGCGGTGCGCGACCCGCGCCTGCACACGCCCATGTACTACTTCCTCTGCCACCTGGCCTTGGTAGACGCGGGCTTCACCACTAGCGTGGTGCCGCCGCTGCTGTCCAACCTGCGCGGATCAGCG-----CTCTGGCTGCCGCGCAGCCACTGCACGGCCCAGCTGTGCGCATCGCTGGCTCTGGGTTCGGCCGAGTGCGTCCTCCTGGCGGTGATGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5819563 290 +   6154872 CTGCAGCCGGTCCTCTTCGCCCTTGTCCTCCTGTGCTACCTCCTGACCTTGACTGGCAACTCGGCGCTGGTGCTGCTGGCGGTGTGCGACCCGCGCCTACACACGCCCGTGTACTACTTCCTCTGCCACCTGGCCTTGGTAGACGCGGGCTTCACCACTAGCGTGGTGCCGCCGCTGCTGGCCAACCTGCGCGGACCAGCG-----CTCTGGCTGCCGCGCAGCCACTGCACGGCCCAGCTGTGCGCATCGCTGGCTCTGGGTTCGGCCGAGTGCGTCCTCCTGGCGGTGATGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74545742 290 + 122973662 CTGCAGCCGGTCCTCTTCGCCCTAGTCCTCCTGTGCTACCTCCTGACCTTGACTGGCAACTCGGCGGGGGAGCTGCTGGCGGTGCGCGACCCGCGCCTGCACACGTGCGTGTACTACTTCCTCTGCCACCTGGCCTTGGTAGATGCGGGCTTCACCACCAGAATGGTGCCGCCACTGCTGGCCAACCTGCGCGGACCAGCG-----CTCTGGCTGCCTCGCAGCCACTGCACGGCCCAGCTGTGCGCATCGCTGGCTCTGGGTTCGGCCGAGTGAGTCCTCCCGGCGGTGATGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30011118 290 + 172585720 CTGCAGCCGGTCCTCTTCGCCCTTGTCCTCCTCTGCTACCTCCTGACCTTGACCGGCAACTCGGTGCTGGTGCTGCTGACGGTGCGCGACCCGCGCCTGCACACGCCCATGTACTACTTCCTCTGCCACCTGGCCTTGGTGGACGCGGGCTTCACCACGAGCGTGGTGCCGCCCCTGCTGGCCAACCTGCGCGGACCAGCG-----CTCTGGCTGCCGCGCAGCCACTGCACGGCCCAGCTGTGCGCATCGCTGGCTCTGGGTTCCGCCGAGTGCGTCCTCCTGGCGGTGATGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29675014 290 - 170955103 CTGCAGCCGGTCCTCTTCGCCCTTGTCCTCCTCTGCTACCTCCTGACCTTGACCGGCAACTCGGTGCTGGTGCTGCTGACGGTGCGCGACCCGCGCCTGCACACGCCCATGTACTACTTCCTCTGCCACCTGGCCTTGGTGGACGCGGGCTTCACCACGAGCGTGGTGCCGCCCCTGCTGGCCAACCTGCGCGGACCAGCG-----CTCTGGCTGCCGCGCAGCCACTGCACGGCCCAGCTGTGCGCATCGCTGGCTCTGGGTTCCGCCGAGTGCGTCCTCCTGGCGGTGATGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2721178 290 -   2996164 CTGCAGCCTGTCCTCTTCGCCCTTGTCCTCCTCTGCTACCTCCTGACCTTGACCGGCAACTCGGTGCTGGTGCTGCTGACGGTGCGCGACCCGCGCCTGCACACGCCCATGTACTACTTCCTCTGCCACCTGGCCTTGGTGGACGCGGGCTTCACCACGAGCGTGGTGCCGCCCCTGCTGGCCAACCTGCGCGGACCAGCG-----CTCTGGCTGCCGCGCAGCCACTGCACGGCCCAGCTGTGCGCATCGCTGGCTCTGGGTTCGGCCGAGTGCGTCCTCCTGGCGGTGATGGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     470949 290 +    766320 CTGCAGCCTGTCCTCTTCGCCCTTGTCCTCCTCTGCTACCTCCTGACTTTGACCGGCAACTCGGTGCTGGTGCTGCTGACGGTGCGCGACCCGCGCCTGCACACGCCTATGTACTACTTCCTCTGCCACCTGGCCTTGGTGGACGCGGGCTTCACCACGAGCGTGGTGCCGCCCCTGTTGGCCAATCTGCGCGGACCAGCG-----CTCTGGCTTCCGCGCAGCCACTGCATGGCCCAGCTGTGCGCATCGCTGGCTCTGGGTTCGGCCGAGTGCGTCCTCCTGGCGGTGATGGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28928639 290 -  71996105 CTGCAGCCGGTCCTCTTCGCCCTTGTCCTCCTCTGCTACCTCCTGACCTTGACCGGCAACTCGGTGCTGGTGCTGCTGACGGTGCGCGACCCGCGCCTGCACACGCCCATGTACTACTTCCTCTGCCACCTGGCCTTGGTGGACGCGGGCTTCACCACCAGCGTGGTGCCGCCCCTGCTGGCCAACCTGCGCGGACCAGCG-----CTCTGGCTGCCGCGCAGCCACTGCACGGCCCAGCTGTGCGCATCGCTGGCTCTGGGTTCGGCCGAGTGCGTCCTCCTGGCGGTGATGGC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2552677 290 -   3067355 CTGCAGCCGGTCCTCTTCGCCCTTGTCCTCCTCTGCTACCTCCTGACCTTGACCGGCAACTCGGTGCTGGTGCTGCTGGCGGTGCGCGACCCGCGCCTGCACACGCCCATGTACTACTTCCTCTGCCACCTGGCCTTGGTGGATGCGGGCTTCACCACGAGCGTGGTGCCGCCCCTACTGGCCAACCTGCGCAGACCAGCC-----CTCTGGCTGCCGCGCAGCCACTGCACGGCCCAGCTGTGCGCATCGCTGGCTCTGGGTTCGGCCGAGTGCGTCCTCCTGGCGGTGATGGC
i colAng1.NW_012115566v1   C 0 M 365
s saiBol1.JH378357           151480 290 -    242197 CTGCAGCCGGTCCTCTTCGCCTTTGTCCTCCTTTGCTACCTCCTGACCTTGACCAGCAACGCGGCGCTGGTGCTGCTGGTGGTGCGCGACCCGCGCCTGCACACGCCCATGTACTACTTCCTTTGCCATCTGGCCCTGGTGGACGCGGGCTTCACCTCGAGTGTGGTGCCGCCGCTGCTGGCCAACCTGCGCGGACCGGCG-----CTCTGGCTCGCGCGCAGCCACTGCACGGCCCTGCTGTGCGCATCGCTGGCGCTGGGTTCCGCCGAGTGCGTCCTCTTGGCTGTGATGGC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     153619 290 -   1771730 CTGCAGCAGGTCCTCTTCGCCCTTGTCCTCCTCTGCTACCTCCTGACCTTGACCAGCAACTCGGCGCTGGTGCTGCTGGTGGTGCGCGACCCGCGCCTGCACACGCCCATGTACTACTTCCTTTGCCACCTGGCCCTGGTAGACACGGGCTTCACCACGAGTGTGGTGCCGCCGCTGCTGGCCAACCTGCGCGTACCCGCG-----CTCTGGCTCCCGCGCAGCCACTGCACTGCCCAGCTGTGCGCATCGCTGACGCTGGGTTCCGCCGAGTGCGTCCTCTTGGCTGTGATGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     212527 290 -    457564 CTGCAGCCGGTCCTCTTCGCCCTTGTCCTCCTATGTTACCTCCTGACCTTGACCAGCAATTCGGCGCTGGTGCTGCTGGTGGTGCGCGACCCGCGCCTGCACACGCCCATGTACTACTTCCTTTGCCACCTGGCCCTGGTGGACGCGGGCTTCACCACGAGTGTGGTGCCGCCGCTGCTAGCCAACCTGCGCGGACCGGCG-----CTCTGGCTCCCGCGCAGCCACTGCACGGCCCAGCTGTGCGCCTCGCTGGCGCTGGGTTCTGCCGAGTGCGTCGTCTTGGCTGTGATGGC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     507631 290 +    730504 CTGCAGCCCGTCCTCTTCGCGCTTGTCCTCCTCTGCTACCTCCTGACCCTGAGCGGCAACTCCGCGCTCGCGCTGCTGGCGGCGCGCGACCCGCGCCTGCACACGCCCATGTACTACCTCCTCTCCCACCTGGCGCTGGTGGACGCGGGCTTCACCACGAGCGTGGTGCCGCCGCTGCTGGCCTCCCTGCGCGGCCCGGCG-----CTCTGGCTGCCGCGCGGGGGCTGCCTGGTCCAGCTGAGCACGTCGCTGGCGCTGGGCTCGACCGAGTGCGTCCTGCTGGCCGCGATGGC
i proCoq1.NW_012152574v1   I 6590 C 0
s otoGar3.GL873550            66901 290 +  18854210 CTGGAAAAGATTCTCTTCCTGGTTGTCTTAACTGCCTACCTCCTGACCCTGGTGGGCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAAGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACAAGTTGTGTCCCCCAGATGCTGGTCAACCTCTGGGGCCCAAAGAAAACCATCAGCTTCC-----TGGGCTGCTCTGTGCAGCTCTTCATCTTCCTGTCCCTGGGGACCACTGAATGCATTCTCCTGACAGTAATGGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57789593 290 -  94987271 CTGCAGCCTGTCCTCTTCGCACTGGTCCTTCTCTGCTACCTACTAACGCTCACCGGCAACGCGGCGTTGGTGCTGCTGGCCATTCGCGACCCTCGCCTGCACACACCCATGTACTACTTCCTTTGCCACTTGGCTCTGGTGGATGTGGGTTTCACCACTAGTGTGGTGCCACCGCTGCTGGCCAGCCTGCGCGGCTCAATG-----CTGCAGCTACCGCGCGCTGGGTGCATGGCTCAGCTGTGCTCATCGCTGGCGCTGGGCTCCGCCGAGTGCGTGCTGCTGGCCGTCATGGC
i mm10.chr17               C 0 C 0
e manLeu1.NW_012099233v1     103706 1797 +    290775 I

a score=1875079.000000
s hg38.chr6_GL000254v2_alt   818975 216 +   4827813 TCTGGACCGCGCGGCCGCAGTGTGCCGCCCGCTGCGCTATGCGGGGCTCGTCTCCCCGCGCCTATGTCGCACGCTGGCCAGCGCCTCCTGGCTAAGCGGCCTCACCAACTCGGTTGCGCAAACCGCGCTCCTGGCTGAGCGGCCGCTGTGCGCGCCCCGCCTGC---TGGACCACTTCATCTGTGAGCTGCCGGCGTTGCTCAAGCTGGCCTGCGGAGG
s panTro5.chr6             29781794 216 + 175400573 TCTGGACCGCGCGGCCGCAGTGTGCCGCCCGCTGCGCTACGCGGGGCTCGTCTCCCCGCGCCTATGTCGCACGCTGGCCAGCGCCTCCTGGCTAAGCGGCCTCACCAACTCGGTTGCGCAAACCGCGCTCCTGGCTGAGCGGCCGCTGTGCGCGCCCCGCCTGC---TGGACCACTTCATCTGTGAGCTGCCGGCGTTGCTCAAGCTGGCCTGCGGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30016403 216 + 173848474 TCTGGACCGCGCGGCCGCAGTGTGCCGCCCGCTGCGCTACGCGGGGCTCGTCTCCCCGCGCCTATGTCGCACGCTGGCCAGCGCCTCCTGGCTAAGCGGCCTCACCAACTCGGTTGCGCAAACCGCGCTCCTGGCTGAGCGGCCGCTGTGCGCGCCCCGCCTGC---TGGACCACTTCATCTGTGAGCTGCCGGCGTTGCTCAAGCTGGCCTGCGGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5819853 216 +   6154872 TGTGGACCGCGCGGCCGCAGTGTGCCGCCCGCTGCGCTACGCGGGGCTCGTCTCCCCGCGCCTGTGTCGCACGCTGGCCAGCGCCTCCTGGCTAAGCGGCCTCACCAACTCGGTTGCGCAAACCGCGCTCTTGGCTGAGCGGCCGCTGTGCGCGCCCCGCCTGC---TGGACCACTTCATCTGTGAGCTTCCGGCGTTGCTCAAGCTGGCCTGCGGAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74546032 216 + 122973662 TCTGGACCGCGCGGCCGCAGTGTGCCGCCCGCTGCGCTACGCGGGGCTCACCTCCCCGCGCCTATGTCGCGCGCTGGCCAGCGCTTCCTGGCTAGGCGGCCTCACCAACTCCGTTGCGCAAACCGCGCTCCTGGCTGAGCGGCCGCTGTGCGCGCCCCGCCTGC---TGGACCACTTCATCTGTGAGCTGCCGGCGTTGCTCAAGCTGGCCTGCGGAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30011408 216 + 172585720 GCTGGACCGCGCGGCCGCAGTGTGCCGGCCGCTGCGCTACGCTGGGCTCGCCTCCCCGCGCCTATGCCGCGCGCTGGCCAGCTCCTCCCGGCTAGGCGGCCTCACCAACTCCGTTGCGCAAACAGCGCTCCTGGCTGAGCGGCCTCTGTGCGGGCCCCGCCTGC---TGGACCACTTCATCTGTGAGCTGCCGGCGTTGCTCAAGCTGGCCTGCGGAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29675304 216 - 170955103 GCTGGACCGCGCGGCCGCAGTGTGCCGTCCGCTGCGCTACGCTGGGCTCGCCTCCCCGCGCCTATGCCGCGCGCTGGCCAGCTCCTCCTGGCTAGGCGGCCTCACCAACTCCGTTGCGCAAACAGCGCTCCTGGCTGAGCGGCCTCTGTGCGGGCCCCGCCTGC---TGGACCACTTCATCTGTGAGCTGCCGGCGTTGCTCAAGCTGGCCTGCGGAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2721468 216 -   2996164 GCTGGACCGCGCGGCCGCAGTGTGCCGTCCGCTGCGCTACGCTGGGCTCGCCTCCCCGCGCCTATGCCGCGCGCTGGCCAGCTCCTCCTGGCTAGGCTGCCTCACCAACTCCGTTGCGCAAACAGCGCTCCTGGCTGAGCGGCCTCTGTGCGGGCCCCGCCTGC---TGGACCACTTCATCTGTGAGCTGCCGGCGTTGCTCAAGCTGGCCTGCGGAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     471239 216 +    766320 GCTGGACCGCGCGGCCGCAGTGTGCCGCCCGCTGCGCTACGCTGGTCTCGCCTCCCCGCGCCTATGCCGCGCGCTGGCCAGCGCCTCCTGGCTAGGCGGCCTCACCAACTCCGTTGCGCAAACCGCGCTGCTGGCTGAGCGGCCGCTGTGGGGGCCCCGCCTGC---TGGACCACTTCATCTGTGAGCTGCCGGCGTTGCTCAAGCTGGCCTGCGGAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28928929 216 -  71996105 GCTGGACCGCGCGGCCGCAGTGTGCCGTCCGCTGCGCTACGCTGGGCTCGCCTCCCCGCGCCTATGCCGCGCGCTGGCCAGCGCCTCCTGGCTAGGCGGCCTCACCAACTCCGTTGCGCAAACAGCGCTCCTGGCTGAGCGGCCTCTGTGCGGGCCCCGCCTGC---TGGACCACTTCATCTGTGAGCTGCCGGCGTTGCTCAAGCTGGCCTGCAGAGG
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378357           151770 216 -    242197 GCTGGACCGCGCGGCCGCAGTGTGCCTCCCGCTGCGCTACGCTGGCCTGGCCTCCCCCGGCCTCTGCCGCGCTCTGGCCGGCGCCTCCTGGCTAGGCGGCCTCGCCAACTCCGTCGCGCAAACTGCGCTCCTGACTCAGCGGCCCCTGTGCGCGCCCCGCCTGC---TGGACCACTTCATCTGCGAGCTGCCGGCGCTGCTCAAGCTGGCCTGCGGCGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     153909 216 -   1771730 GCTGGACCGCGCTGCCGCAGTGTGCCTCCCGCTGTGCTACGCTGGCCTCGCCTCCCCGGGCCTCTGCCGCGCTCTGGCCGGCGCCTCCTGGCTAGGCGGCCTCACCAACTCCGTCGCGCAAACTGCGCTCCTGACTCAGCGGCCCCTGTGCGCGCCCCGTCTGC---TGGACCACTTCATCTGCGAGCTGCCAGCGCTGCTCAAGCTGGCCTGCAGCGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     212817 216 -    457564 GCTGGACCGCGCGGCCGCAGTATGCTGCCCGCTGCGCTACTCTGGGCTCGCCTCCCCGGGCCTCTGCCACGCTCTGGCCAGCGCCTCCTGGCTAGGCGGCCTCACCAATTCCATCGCGCAAACCGCGCTCCTGACTCAGCGGCCCCTGTGCGCGCCCCGCCTGC---TGGACCACTTCATCTGCGAGCTGCCGGCGCTGCTCAAGCTAGCCTGCGGCGG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     507921 216 +    730504 CCTGGACCGCGCGGCCGCCGTGTGCCGTCCCCTGCGCTACGCCGGGCTCGCCGCGCCGCGCCTCTGCCGCGCGCTGGCCGGCGCCTCCTGGCTCGGCGGCCTCGCCAACTCCGCTGCGCAGACGGCGCTCCTGGCGACGCGGCCGCTGTGCAAGCCCCGCCGGC---TGGACCACTTCATCTGCGAGCTGCCCGCGCTGCTCAAGCTGGCCTGCGGCGG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            67191 216 +  18854210 CTTTGACCGCTATGTGGCTGTCTGCCAACCCCTCCACTATGCCACCATCATCCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTCTCCTGGGTTATTGGGCTGGTGGAGTCAGTGGTTCAGACACCACCC---ACCCTCCGCCTGCCCTTCTGCCCACACCGGCAAGTGGATGATTTTGTCTGCGAGGTCCCAGCTCTAATTCGACTCTCCTGTGCAGA
i otoGar3.GL873550         C 0 T 32175
s mm10.chr17               57789883 216 -  94987271 GCTGGACCGCGCGGCTGCGGTATGCAACCCTCTGCGCTACACCTCACTGGCCTCGCCGCTACTGTGCCGCACGCTGGCCGGAGTCTCCTGGCTCGGTGGCCTGGCCAACTCCGCGGCGCAGACCGCCCTGCTGGCCGCGCGTCCCCTGTGCGCACCCCGCTGTC---TGGACCATTTCATCTGCGAGTTGCCGGCGCTGCTGCAGCTGGCCTGCCGCGG
i mm10.chr17               C 0 C 0
e colAng1.NW_012115566v1    2552967 365 -   3067355 M
e manLeu1.NW_012099233v1     103706 1797 +    290775 I

a score=794309.000000
s hg38.chr6_GL000254v2_alt   819191 91 +   4827813 CGACGGAGACACTACCGAGAACCAGATGTTCGCCGCCCGCGTGGTCATCCTGCTGCTGCCGTTTGCCGTCATCCTGGCCTCCTACGGTGCC
s panTro5.chr6             29782010 91 + 175400573 CGACGGAGACACTACCGAGAACCAGATGTTCGCCGCCCGCGTGGTCATCCTGCTGCTGCCGTTTGCCGTCATCCTGGCCTCCTACGGTGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30016619 91 + 173848474 CGACGGAGACACTACCGAGAACCAGATGTTCGCCGCCCGCGTGGTCATCCTGCTGCTGCCGTTTGCCGTCATCCTGGCCTCCTACGGTGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5820069 91 +   6154872 CGACGGAGACACTACAGAGAACCAGATGTTCGCCGCCCGCGTGGTCATCCTGCTGCTGCCGTTTGCCGTCATCCTGGCCTCCTGCGGTGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74546248 91 + 122973662 CGACGGAGACACTACCGAGAACCAGATGTTCGTCGCCCGCGTGGTCATCCTGCTGCTGCCGTTTGCCGTCATCCTGGCCTCCTACGGTGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30011624 91 + 172585720 CGACGGAGACACCACCGAGAACCAGATGTTCGCCGCCCGTGTGGTCATCCTGCTGCTGCCGTCTGGCGTCATCCTGGCCTCCTATGGTGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29675520 91 - 170955103 CGACGGAGACACCACCGAGAACCAGATGTTCGCCGCCCGTGTGGTCATCCTGCTGCTGCCGTCTGGCGTCATCCTGGCCTCCTATGGTGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2721684 91 -   2996164 CGACGGAGACACCACCGAGAACCAGATGTTCGCCACCCGTGTGGTCATCCTGCTGCTGCCGTCTGGCGTCATCCTGGCTTCCTATGGTGCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     471455 91 +    766320 CGACGGAGACACCACCGAGAACCAGATGTTCGCCGCCCGCGTGGTCATCCTGCTGCTGCCGTCTGCTGTCATCCTGGCCTCCTATGGTGCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28929145 91 -  71996105 CGACGGAGACACCACCGAGAACCAGATGTTCGCCGCCCGTGTGGTCATCGTGCTGCTGCCGTCTGGCGTCATCCTGGCCTCCTATGGTGCC
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378357           151986 91 -    242197 CGACGGAGACGCTACCGAGAGCCAGATGTTCGCCGCCCGCGTGGTCATCCTGCTGCTGCCGTCAGCCGTCATCCTGGCCTCCTACGGTGCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     154125 91 -   1771730 CGACGGAGACGCTACCGAGAGCCAGATGTTCGCCGCCTGCGTGATTATCCTGCTGCTACCGTCCGCCGTCATCCTGGCCTCCTACGGTGCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     213033 91 -    457564 CGACGGATACACCACCGAGAGCCAGATGTTCGCCGCCCGCGTGGTCATCCTGCTGCTGCCGTCCGCCGTCATCCTGGCCTCCTATGGTGCC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     508137 91 +    730504 CGGCGGAGACGCCACCGAGAGCCAGATGTTCGCCGCCCGCGTGGTCATCCTGCTGGTGCCTTCCGCCGTCATCCTGGCCTCCTACGCCGCG
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57790099 91 -  94987271 CGGCCGCAGCGCCACCGAGCGCCAGATGTTCGCCGCGCGTGTGGTCATCCTGTTGGTGCCTTCGGCGGTCATCCTGGCCTCCTACATCGCC
i mm10.chr17               C 0 C 0
e otoGar3.GL873550            67407 32175 +  18854210 T
e colAng1.NW_012115566v1    2552967 365 -   3067355 M
e manLeu1.NW_012099233v1     103706 1797 +    290775 I

a score=243540.000000
s hg38.chr6_GL000254v2_alt   819282 24 +   4827813 GTGGCCCGAGCTGTCTGTTGCATG
s panTro5.chr6             29782101 24 + 175400573 GTGGCCCGAGCTGTCTGTTGCATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30016710 24 + 173848474 GTGGCCCGAGCTGTCTGTTGCATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5820160 24 +   6154872 GTGGCCCGAGCTGTCTGTTGCATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74546339 24 + 122973662 GTGGCCGGAGCTGTCTGCTGCATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30011715 24 + 172585720 GTGGCCCGAGCTGTCTGTTGCATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29675611 24 - 170955103 GTGGCCCGAGCTGTCTGTTGCATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2721775 24 -   2996164 GTGGCCCGAGCTGTCTGTTGCATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     471546 24 +    766320 GTGGCCCGAGCTGTCTGTTGCATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28929236 24 -  71996105 GTGGCCCGAGCTGTCTGTTGCATG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2553336 24 -   3067355 GTGGCCCGAGCTGTCTGTTGCATG
i colAng1.NW_012115566v1   M 365 C 0
s saiBol1.JH378357           152077 24 -    242197 GTGGCCCGAGCTGTCTGTCGCATG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     154216 24 -   1771730 GTGGCCCGAGCTGTCTGTCGCATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     213124 24 -    457564 GTGGCCCGAGCTGTCTGTCGCATG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     508228 24 +    730504 GTGGCCCGGGCCATATGTCGCATG
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57790190 24 -  94987271 GTGGGCCGCGCGGTCTGGGGCATG
i mm10.chr17               C 0 C 0
e otoGar3.GL873550            67407 32175 +  18854210 T
e manLeu1.NW_012099233v1     103706 1797 +    290775 I

a score=4100343.000000
s hg38.chr6_GL000254v2_alt   819306 380 +   4827813 CGGTTCAGCGGAGGCCGGAGGAGGGCGGTGGGCACGTGTGGGTCCCACCTGACAGCCGTCTGCCTGTTCTACGGCTCGGCCATCTACACCTACCTGCAGCCCGCGCAGCGCTACAACCAGGCACGGGGCAAGTTCGTATCGCTCTTCTACACCGTGGTCACACCTGCTCTCAACCCGCTCATCTACACCCTCAGGAATAAGAAAGTGAAGGGGGCAGCGAGGAGGCTGCTGCGGAGTCTGGGGAGAGGCCAGGCTGGGCAGTGAGTA-GTTGGGGAGGGGAGAAAGTATTAAGCCAGAACCCAAGGATGGAAATACCCCTTAGTGAGTCAGTTTAGACTTCAGGCTGTTCATTTTTGTATGATAATCTGCAAGATTTGTCC
s panTro5.chr6             29782125 380 + 175400573 CGGTTCAGCGGAGGCCGGAGGAGGGCGGTGGGCACGTGTGGGTCCCACCTGACAGCCGTCTGCCTGTTCTACGGCTCGGCCATCTATACCTACCTGCAGCCCGCGCAGCGCTACAACCAGGCACGGGGCAAGTTCGTATCGCTCTTCTACACCGTGGTCACACCTGCTCTCAACCCGCTCATCTACACCCTCAGGAATAAGAAAGTGAAGGGGGCAGCGAGGAGGCTGCTGCGGAGTCTGGGGAGAGGCCAGGCTGGGCAGTGAGTA-GTTGGGGAGGGGAGAAAGTATTAAGCCAGAACCCAAGGATGGAAATACCCATTAGTGAGTCAGTTTAGACTTCAGGCTGTTCATTTTTGTATGATAATCTGCAAGATTTGTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30016734 380 + 173848474 CGGTTCAGCGGAGGCCGGAGGAGGGCGGTGGGCACGTGTGGGTCCCACCTGACAGCCGTCTGCCTGTTCTACGGCTCGGCCATCTATACCTACCTGCAGCCCGCGCAGCGCTACAACCAGGCACGGGGCAAGTTCGTATCGCTCTTCTACACCGTGGTCACACCTGCTCTCAACCCGCTCATCTACACCCTCAGGAATAAGAAAGTGAAGGGGGCAGCGAGGAGGCTGCTGCGGAGTCTGGGGAGAGGCCAGGCTGGGCAGTGAGTA-GTTGGGGAGGGGAGAAAGTATTAAGCCAGAACCCAAGGATGGAAATACCCATTAGTGAGTCAGTTTAGACTTCAGGCTGTTCATTTTTGTATGATAATCTGCAAGATTTGTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5820184 378 +   6154872 CGGTTCAGCGGAGGCCGCAGGAGGGCGGTGGGCACGTGTGGGTCCCACCTGACAGCCGTCTGCCTGTTCTACGGCTCGGCCATCTACACCTACCTGCAGCCCGCGCAGCGCTACAA--AGGCACGGGGCAAGTTCGTATCGCTCTTCTACATCGTGGTCACACCTGCTCTCAACCCGCTCATCTACACCCTCAGGAATAAGAAAGTGAAGGGGGCAGCGAGGAGGCTGCTGCGGAGTCTGGGGAGAGGCCAGGCTGGGCAGTGAGTA-GTTGGGGAGCGGAGAAAGTATTAAGCCAGAACCCAAGGATGGAAATACCCATTAGTGAGTCAGTTTAGCCTTCAGGCTGTTCATTTTTGTATGATAATCTGCAAGATTTGTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74546363 380 + 122973662 CGGTTCAGCGGAGGCCGGAAGAGGGCGGTGGGCACGTGTGGGTCCCACCTGACAGCCGTCTGCCTGTTCTACGGCTCGGCCATCTACACCTACCTGCAGCCCGCTCAGCGCTACAACCAGGCACGGGGCAAGTTCGTATCGCTCTTCTACACCGTGGTCACACCTGCTCTCAACCAGTTCATCTACACCCTCAGGAATAAGGAAGTGAAGGGGGCAGCGAGGAGGCTGCTGCGGAGTCTGGAGAGAGGCCAGGCTGGGCAGTGAGTA-GTTGGGGAGGGGAGAAAGTATTACACCAGAACCCAGGGATGGAAATACCCATTAGTGAGTCAGTTCAGACTTCAGGCTGTTCATTTTTGTATGATAATCTGCAAGATTTGTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30011739 381 + 172585720 CGGTCCAGCGGAGGCCGGAGAAGGGCGGTGGGCACGTGTGGGTCCCACCTGACAGCGGTCTGCCTGTTCTACGGCTCGGCCATCTACACCTACTTGCAGCCGGCGCAGCGCTACAACCAGGCACGGGGCAAGTTCGTATCGCTCTTCTACACCGTGGTCACACCCGCTCTCAACCCGCTCATCTACACCCTCAGGAATAAGGAAGTGAAGGGGGCGGCGAGGAGGCTGCTGTGGAGTCTGGGGAGAGGCCAGGCTGTACAGTGAGTAGGTTGGGGAGGGGAGAAAGTATTAAGCCAGAACCCAAGGATGGAAATACCCATTAGTGAGTCAGCTTAGACTTCAGACTCTTCATTTTTGTATGATAATCTGCAAGATTTGTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29675635 381 - 170955103 CGGTCCAGCGGAGGCCGGAGAAGGGCGGTGGGCACGTGTGGGTCCCACCTGACAGCGGTCTGCCTGTTCTACGGCTCGGCCATCTACACCTACTTGCAGCCCGCGCAGCGCTACAACCAGGCACGGGGCAAGTTCGTATCGCTCTTCTACACCGTGGTCACACCCGCTCTCAACCCGCTCATCTACACCCTCAGGAATAAGGAAGTGAAGGGGGCGGCGAGGAGGCTGCTGTGGAGTCTGGGGAGAGGCCAGGCTGTACAGTGAGTAGGTTGGGGAGGGGAGAAAGTATTAAGCCAGAACCCAAGGATGGAAATACCCATTAGTGAGTCAGTTTAGACTTCAGACTCTTCATTTTTGTATGATAATCTGCAAGATTTGTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2721799 381 -   2996164 CGGTCCAGCGGAGGCCGGAGAAGGGCGGTGGGCACGTGTGGGTCCCACCTGACAGCGGTCTGCCTGTTCTACGGCTCGGCCATCTACACCTACTTGCAGCCCGCGCAGCGCTACAACCAGGCACGGGGCAAGTTCGTATCGCTCTTCTACACTGTGGTCACACCCGCTCTCAACCCGCTCATCTACACCCTCAGGAATAAGGAAGTGAAGGGGGCGGCGAGGAGGCTGCTGTGGAGTCTGGGGAGAGGCCAGGCTGTACAGTGAGTAGGTTGGGGAGGGGAGAGAGTATTAAGCCAGAACCCAAGGATGGAAATACCCATTAGTGAGTCAGTTTAGACTTCAGACTCTTCATTTTTGTATGATAATCTGCAAGATTTGTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     471570 381 +    766320 CGGTCCAGCGGAGGCCGGAGGAGGGCGGTGGGCACTTGTGGGTCCCACCTGACAGCGGTCTGCCTGTTCTTTGGCTCGGCCATCTACACCTACTTGCAGCCCGTGCGGCGCTACAACCAGGCACGGGGCAAGTTCGTATCGCTCTTCTACACCGTGGTCACACCCGCTCTCAACCCGCTCATCTACACCCTCAGGAATAAGGAAGTGAAGGTGGCAGCGAGGAGGCTGCTGTGGAGTCTGAGGAGAGGCCAGGCTGTACAGTGAGTAGGTTGGGGAGGGGAGAAAGTATTAAGCCAGAACCCAAGGATGGAAATACCCATTAGTGAGTCAGTTTAGACTTCAAACTGTTCATTTTTTTATGATAATCTGCAAGATTTGTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28929260 381 -  71996105 CGGTCCAGCGGAGGCCGGAGGAGGGCGGTGGGCACGTGTGGGTCCCACCTGACAGCGGTCTGCCTGTTCTACGGGTCGGCCATCTACACCTACTTGCAGCCCGCGCAGCGCTACAACCAGGCACGGGGCAAGTTCGTATCGCTCTTCTACACCGTGGTCACACCCGCTCTCAACCCGCTCATCTACACCCTCAGGAATAAGGAAGTGAAGGGGGCGGCGAGGAGGCTGCTGTGGAGTCTGGGGAGAGGCCAGGCTGTACAATGAGTAGGTTGGGGAGGGGAGAAAGTATTAAGCCAGAACCCAAGGATGGAAATACCCATTAGTGAGTCAGTTTAGACTTCAGACTCTTCATTTTTGTATGATAATCTGCAAGATTTGTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     105503 380 +    290775 CGGTCCAGCGGAGGCCGGAGGAGGGCGGTGGGCACTTGTGGGTCCCACCTGACAGCGGTCTGCCTGTTCTACGGCTCGGCCATCTACACCTACTTGCAGCCCGCGCAGCGCTACAACCAGGCACGGGGCAAGTTCGTATCGCTCTTCTACACCGTGGTCACACCCGCTCTCAACCCGCTCATCTACACCCTCAGGAATAAGGAAGTGAAGGGGGCAGCGAGGAGGCTGCTGTGGAGTCTGGGGAGAGGCCAGGCTGTACAGTGAGTAGGTTGGGGAGGGGAGAAAGTATTAAGCCAGAACCCAAGGATGGAAATACCCATTAGTGAGTCAGTTTAGACTTCAAACTGTTCATTTTT-TATGATAATCTGCAAGATTTGTCC
i manLeu1.NW_012099233v1   I 1797 C 0
s colAng1.NW_012115566v1    2553360 381 -   3067355 CGGTCCAGCGGAGGCCGGAGGAGGGCGGTGGGCAAGTGTGGGTCCCACCTGACAGCAGTCTGCCTGTTCTACGGCTCAGCCATCTGCTCCTACCTGCAGCCCGCGCAGCGCTACAACCAGGCACGGGGCAAGTTCGTATCGCCCTTCTACACCGTGGTCACACCCGCTCTCAACCCGCTCATCTACACCCTCAGGAATAAGGAAGTGAAGGGGGCGGCGAGGAGGCTGCTGTGGAGTCTGGGGAGAGGCCAGGCTGTACAGTGAGTAGGTTGGGGAGGGGAGAAAGTATTAAGCCAGAATCCAAGGATGGAAATACCCATTAGTGAGTCAGTTTAGACTTCAGACTGTTCATTTTTGTATGATAATCTGCAAGATTTGTCC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           152101 381 -    242197 AGGTCCAGCGGAAGCCGGAGGAGGGCGGTGGGCACATGTGGGTCCCACCTGACAGCCGTCTGCCTGTTCTACGGCTCGGCTGTCTACACTTACCTGCAGCCGGCGCAGCGCTACGACCAGGCGCGGGGCAAGTTCGTATCTCTCTTCTACACCGTGGTCACACCCGCCCTCAACCCGCTCATATACACTCTCAGGAATAAGGAAGTGAAGGGGGCGGCGAGGAGGCTGCTGGGAGGCCTGGGGAGAGGCCAAGCTGAACAGTGAGTGGGTTGGGGAGGAGAGAAAGTATTAAGCCAGAACCCAAGGATGAAAATACCTAATCGTGAGTCGGTTTAGTCTTCAGTCTGTTCATTTCTGTATGATAATCTCCAAGATTTGTCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     154240 381 -   1771730 CGGTCCAGCGGAAGCCGGAGGAGGGCGGTGGGCACTTGTGGGTCCCACCTGACAGCCGTCTGCCTGTTCTACTGCTCGGCCGTCTACACTTACCTGCAGCCCGCGCAGCACTACGACCAGGCGCGGGGCAAGTTCGTATCGCTCTTCTACACCGTGGTCACACCTGCCCTCAACCCGCTCATATACACCCTCAGGAATAAGGAAGTGAAGGGGGCGGCGAGGAGGCTGCTGGGGAGCCCGGGGAGAGGCCAAGCTGGACAGTGAGTGCGTTGGGGAGGAGAGAAAGTATTAGGCCAGAACCCAAGGATGAAAATACCTAATCGTGAGTCAGTTTAGTCTTCAGATTGTTCATTTTTGTATAATAATCTCCAAGATTTGTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     213148 381 -    457564 CGGTCCAGCGGAAGCCGAAGGAGGGCGGTGAGCACATGTGGGTCCCACCTAACAGCCGTCTGCCTGTTCTACGGCTCGGCCGTCTACACTTATCTTCAGCCCGCGCAGCGCTACGACCAGGCGCAGGGCAAGTTCGTATCGCTCTTCTACACCGTGGTCACACCCACCCTCAACCCGCTCATATACACCCTCAGGAATAAGGAAGTGAAGGGGGCGGCGAGGAGGCTGCTGGGAAGCCTGGGAAGAGGCCAAGCTGGACAGTGAGAGGATTGGGAAGGGGAGAAAGTATTAAGCCAGAACCCAAGGATGAAAATACCTAACCGTGAGTCAGTTTAGTCTTCAGACTGTTCATTTTTGTATGATAATCTCCAAGATTTGTCC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     508252 376 +    730504 CGGTCCAGCGGTGGCCGGAGAAAAGCGGTGGGCACGTGCGGGTCTCACCTGACAGCTGTCTGCCTGTTCTATGGCTCGGCCATCTACACCTACCTGCAGCCCACTGACCGCTACAAGCAGCGGCGCGGCAAGTTCGTTTCGCTCTTCTACACGGTGGTCACACCGGCCCTTAACCCGCTTATCTACACCCTCAGGAATAGGGAAGTGAAGCGGGCAGCGAGGAGGCTTCTGGGGAGTCTGGGGAGAGGGCAGGCCAGACAGTGAGTG-GATTGGGAGGGAAGAAAGTATTAGCCCAGGGTCCAAGCACGGAAATACCCATTGGAGAGTCAGTTTAGCCTTCAG----TACATTCTTGTATGAAAATCTGCAAGATTTGTCC
i proCoq1.NW_012152574v1   C 0 I 986
s mm10.chr17               57790214 345 -  94987271 CACTCCAGCTCTGGCTGGCGGAAAGCGGCGAGCACATGTGGCTCTCACTTGACCGCGGTCTGCCTATTTTATGGCTCTGCCACCTACACCTACCTGCAACCCACGCATAGTTACAACCAGGGCCGTGGCAAATTCGTCTCGCTCTTCTACACGGTGGTCACTCCCGCTCTCAATCCTCTCATCTACACACTGAGGAACAAGGAAGTGAAGGGGGCGGCACTGAGGCTCTTGCGGAGTCTGGGGAGGCCATAGGTGGGACAGTGAAAAAACTGAGAAGGG-------------CTCAGAGTCCTGGAAATAGGATGCTCATAA-----------------------TTTTTGTCTGTGCATAAGGATCTGCAAGTTTTGTGC
i mm10.chr17               C 0 C 0
e otoGar3.GL873550            67407 32175 +  18854210 T

a score=2531810.000000
s hg38.chr6_GL000254v2_alt   819686 300 +   4827813 -TAAGGAGTCCAATG-----GGGGATATGTTTTCCTCCCGTGAGGAAATGTTTAG-TTCTT----------GAGGGAAAATCCCTAAATCCTCTATATACTCAGGTTTA-------------------------------------GGGAAGGAAAAC-------------------------------------------CTACCCCTCACAACTCCACGCGCAGGGAAAATGATGGACG---TGACGCTCGCCTTTAGCTTCCTCCCTA-TCTGATGGAAGACCATGGAAGACCTCTTGGTCTCTGCAATCAGAAG-------TCTCAAGTTGACAAGAAAATCATAGTCCCTACCCTGCAGGAGAGGGTACATCCAGAAAAAGCGACCATGGACTCTATTCTCAG-
s panTro5.chr6             29782505 300 + 175400573 -TAAGGAGTCCAATG-----GGGGATATGTTTTCCTCCCGTGAGGAAATGTTTAG-TTCTT----------GAGGGAAAATCCCTAAATCCTCTATATACTCAGGTTTA-------------------------------------GGGAAGGAAAAC-------------------------------------------CTACCCCTCACAACTCCACGCGCAGGGAAAATGATGGACG---TGATGCTCGCCTTTAGCTTCCTCCCTA-TCTGATGGAAGACCATGGAAGACCTCTTGGTCTCTGCAATCAGAAG-------TCTCAAGTTGACAAGAAAATCATAGTCCCTACCCTGCAGGAGAGGGTACATCCAGAAAAAGCGACCATGGACTCTCTTCTCAG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30017114 300 + 173848474 -TAAGGAGTCCAATG-----GGGGATATGTTTTCCTCCCGTGAGGAAATGTTTAG-TTCTT----------GAGGGAAAATCCCTAAATCCTCTATATACTCAGGTTTA-------------------------------------GGGAAGGAAAAC-------------------------------------------CTACCCCTCACAACTCCACGCGCAGGGAAAATGATGGACG---TGATGCTGGCCTTTAGCTTCCTCCCTA-TCTGATGGAAGACCATGGAAGACCTCTTGGTCTCTGCAATCAGAAG-------TCTCAAGTTGACAAGAAAATCATAGTCCCTACCCTGCAGGAGAGGGTACATCCAGAAAAAGCGACCATGGACTCTCTTCTCAG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5820562 300 +   6154872 -TAAGGAGTCCAATG-----GGGGATATGTTTTCCTCCCGTGCGGAAATGTTTAG-TTCTT----------GAGGGAAAATCCCTAAATCCTCTATATACTCAGGTTTA-------------------------------------GGGAAGGAAAAC-------------------------------------------CTACCCCTCACAACTCCACGCGCAGGGAAAATGATGGACG---TGATGCTCGCCTTTAGCTTCCTCCCTA-TCTGATGGAAGACCATGGAAGACCTCTTGGTCTCTGCAATCAGAAG-------TCTCAAGTTGACAAGAAAATCATAGTCCCTACCCTGCAAGAGAGGGTACATCCAGAAAAAGCGACCATGGACTCTCTTCTCAG-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74546743 299 + 122973662 -TAAGGTGTCCAATG-----GGGGAAATGTTTTCCTCCCGTGAGGAAATGTTTAG-TTCTC----------GAGGGAAAATCCCTAAATCCTCTATATACACAGGTTTA-------------------------------------AGGAAGGAAAAC-------------------------------------------CTACCCCTCACGACTCCACGCGCAGGGAAGATGATGGACA---TGATGCT-GCCTTTAGCTTCCTCCCTA-TCTGATGGAAGACCATGGAAGACCTCTTGGTCTCTGCAATCAGAAG-------TCTCAAGTTGACAAGAAAATCATAGTCCCTACCCTGCAGGAGAGGGTACATCCAGAAAAAGCGGCCATGGAGTCTGTTCTCGG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30012120 299 + 172585720 -TAAGGAGTCCAATG-----GGGGAAATGTTTTCCTCCCGTGTGGAAATGTTTAG-TTCTT----------GAGGGAAAATTCCTAAATCCTCTATATACACAGGTTTA-------------------------------------AGGAAGGAAAAC-------------------------------------------CTACCCCTCACGACTCCACGTGCAGGTAAGATGATGGACG---TGATGACTGCCTTTAGCTTCCTCCCTA-TCTGATGGAAGACCGTGGAAGACCTCTTGATCTCTGCCATCAGAAG-------TCTCAAGTTGACAAGAAAATCATAGTCCCTACTCTGCAGGAGAGGGT-CATCCAGAAAAAGATGCCATGGACTCTCTTCTCGG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29676016 299 - 170955103 -TAAGGAGTCCAATG-----GGGGAAATGTTTTCCTCCCGTGTGGAAATGTTTAG-TTCTT----------GAGGGAAAATTCCTAAATCCTCTATATACACAGGTTTA-------------------------------------AGGAAGGAAAAC-------------------------------------------CTACCCCTCACGACTCCACGTGCAGGTAAGATGATGGACG---TGATGACTGCCTTTAGCTTCCTCCCTA-TCTGATGGAAGACCGTGGAAGACCTCTTGATCTCTGCCATCAGAAG-------TCTCAAGTTGACAAGAAAATCATAGTCCCTACTCTGCAGGAGAGGGT-CATCCAGAAAAAGATGCCATGGACTCTCTTCTCGG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2722180 299 -   2996164 -TAAGGAGTCCAATG-----GGGGAAATGTTTTCCTCCCGTGTGGAAATGTTTAG-TTCTT----------GAGGGAAAATTCCTAAATCCTCTATATACACAGGTTTA-------------------------------------AGGAAGGAAAAC-------------------------------------------CTACCCCTCACGACTCCACGTGCAGGTAAGATGATGGACG---TGATGACTGCCTTTAGCTTCCTCCCTA-TCTGATGGAAGACCGTGGAAGACCTCTTGATTTCTGCCATCAGAAG-------TCTCAAGTTGACAAGAAAATCATAGTCCCTACTCTGCAGGAGAGGGT-CATCCAGAAAAAGAGGCCATGGACTCTCTTCTCGG-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     471951 299 +    766320 -TAAGGAGTCCAATG-----GGGAAAATGTTTTCCTCCCGTATGGAAATGTTTAG-TTCTT----------GAGGGAAAATTCCTAAATCCTCTATATACACAAGTTTA-------------------------------------GGGAAGGAAAAC-------------------------------------------CTACCCCTCACGACTCCACGTGCAGGTAAGATGATGGACG---TGATGACTGCCTTTAGCTTCCTCCCTA-TCTGATGGAAGACCGTGGAAGACCTCTTGGTCTCTGCCATCAGAAG-------TCTCAAGTTGACAAGAAAATCATAGTCCCTACTCTGCAGGAGAGGGT-CATCCGGAAAAAGAGGCCATGGACTCTCTTCTCGG-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28929641 299 -  71996105 -TAAGGAGTCCAATG-----GGAGAAATGTTTTCCTCCCGTGTGGAAATGTTTAG-TTCTT----------GAGGGAAAATTCCTAAATCCTCTATATACACAGGTTTA-------------------------------------AGGAAGGAAAAA-------------------------------------------CTACCCCTCACGACTCCACCTGCAGGTAAGATGATGGACG---TGATGACTGCCTTTAGCTTCCTCCCTG-TCTGATGGAAGACCATGGAAGACCTCTTGGTCTCTGCCATCAGAAG-------TCTCAAGTTGACAAGAAAAGCATAGTCCCTACTCTGCAGGAGACGGT-CATCCAGAAAAAGAGGCCATGGACTCTCTTCTCGG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     105883 299 +    290775 -TAAGGAGTCCAATG-----GGGAAAATGTTTTCCTCCCGTGTGGAAATGTTTAG-TTCTT----------GAGGGAAAATTCCTAAATCCTCTATATACACAAGTTTA-------------------------------------GGGAAGGAAAAC-------------------------------------------CTACCCCTCACGACTCCACGTGCAGGTAAGATGATGGACG---TGATGACTGCCTTTAGCTTCCTCCCTA-TCTGATGGAAGACCGTGGAAGACCTCTTGGTCTCTGCCATCAGAAG-------TCTCAAGTTGACAAGAAAATCATAGTCCCTACTCTGCAGGAGAGGGT-CATCCGGAAAAAGAGGCCATGGACTCTCTTCTCGG-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2553741 297 -   3067355 -TAAGGAGTCCAATG-----GGGGAAATGTTTTCCTCCCGTGTGG-AATGTTTAG-TTCTT----------GAGGGAAAATTCCTAAATCCTCTATATACACAGGTTTA-------------------------------------GGGAAGGAAAAC-------------------------------------------CTACCCCTCACGACTCCACGTGCAGGTAAGATGGTGGACG---TGATGGCTGCCTTTAGCTTCCTCCCTA-TCTGATGGAAGACCGT-GAAGACCTCTTGGTCTCTGCCATCAGAAG-------TCTCAAGTTGACAAGAAAATCATAGTCCCTACTCTGCAGGAGAGGGT-CATCCAGAAAAAGAGGCCATGGACTCTCTTCTCGG-
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           152482 295 -    242197 -TACAGAGTCCAATG-----GGAAAAATACTTTCCTCCCATGAGGAAATGTTTAGATTCTT----------GAGAGAACATCCCTACATCCTCTATATATACAGGTTTA-------------------------------------GGGAGGGAAAA-------------------------------------------------CCTTATGACTCCACACGCAGGTAAGATGATGGACA---TGACGCTCGCCTTTAACTTCCTCCTTA-TCTGATGGAAGACCATAGGAGACCTCTTGGTCTCTGCCATCAGAAG-------TCTCAAGTTCACAAGAAAATCATAATCCCTATCCTCCAGGAGAGGGTACATCCAGAAAAAGTGGCCATGGACTCTCTTCTAGG-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     154621 293 -   1771730 -TACGGAGTCCAATG-----GGGAACATACTTTCCTCCCATGAGGAAATGTTTAGATTCTT----------GAGGGACCATCCCTACATCCTCTAGATATACAGGTTTA-------------------------------------GGGAGGGAAAA-------------------------------------------------CCTTATGACTTCACGTGCAGATAAGATGATGGACA---TGATGCTCGCCTTTAACTTCCTCCTTG-TCTGATGGAAAACCATAGAAGACCCCTTGGTGTTTGCCATCAGAAG-------TCTCAAGTTGACAAGAAAATTATAATCCCTATC--ACAGGAAAGGGTACACCCAGAAAAAGTGGCCATGGACTCTCTTCTAGG-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     213529 295 -    457564 -TAAGGAGTCCAATG-----GGGAGAATACTTTCCTCCCATGAGGAAATGTTTAGATTCTT----------GAGGGAACAACCCTACATCCTCTATATATACAGATTTA-------------------------------------GGGAGGGAAAA-------------------------------------------------CCTTACAACTCCACGTGCAGGTAAGATGATGGACA---TGATGCTCGCCTTTAGCTTCCTCCTTA-TCTGATGGAAGACCATGGGAGACCCCTTGGTCTCTGCCATCAGATG-------TCTCAAGTTGACAAGAAAATTATAATCCCTATCCTCCAGGAGAGGGTACACCCAGAAAAAGTGGCCATGGACTCTCTTCTAGG-
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57790559 400 -  94987271 TCCGTGAGTTCTGGGTTAGTAGCGAGATTCTTTTCTCTCACCGGGTAGGGTTTGAATTCTTGCGGGGTGCGGAGAGGGGACTCCTGAA----ATATATAAACACTCTTAAATGGTGATGTGGTAAATGGCTCTTGGGACTCTCAGTAAGGAGGGAAGCAGGATGCAGGAGGGGGTCAGATGCACTCTGAGGAGACTTTGTACCAGCCCTGAAGAATCCACCTGGAGATAAGATGATGAGCACCCTGGTGCTGACCTTTATTTTTTTCTCCAGGCTTACAAAAGACCTTAAAAAATTCCATGACCTCGCCCATCAGGTGGAGTCTCTCTCGGGTTAACAAAGAAGTTATGGGCCCCACCTTAC---AGAGATCTCTTCCAGAAACAA--GACATGGTTTCCATTCTTGGG
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     508628 986 +    730504 I
e otoGar3.GL873550            67407 32175 +  18854210 T

a score=458493.000000
s hg38.chr6_GL000254v2_alt   819986 45 +   4827813 AAATCAGTCCAACTTAGTGCAGACCTGGCCAGATGACCAGTGCCC
s panTro5.chr6             29782805 45 + 175400573 AAATCAGTCCAACTTAGTGCAGACCTGGCCAGATGACCAGTGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30017414 45 + 173848474 AAATCAGTCCAACTTAGTGCAGACCTGGCCAGATGACCGGTGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5820862 45 +   6154872 AAATCAGTCCAACTTAGTGCAGACCTGGCCAGATGACCAGTGCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74547042 45 + 122973662 AAATCAGTCCAACTTAGTGCAGACCTTGCCAGATGACCAGTGCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30012419 45 + 172585720 AAACCAGTCCAACCTAGTGCAGACCTTGCCAGGGGACCAGTGCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29676315 45 - 170955103 AAACCAGTCCAACCTAGTGCAGACCTTGCCAGGGGACCAGTGCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2722479 45 -   2996164 AAACCAGTCCAACCTAGTGCAGACCTTGCCAGGGGACCAGTGCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     472250 45 +    766320 AAACCAGTCCAACCTAGTGCAGACCTTGCCAGGGAAACAGTGCCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28929940 45 -  71996105 AAACCAGTCCAACCTAGTGCAGACCTTGCCAGGGGACCAGTGCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     106182 45 +    290775 AAACCAGTCCAACCTAGTGCAGACCTTGCCAGGGGAACAGTGCCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2554038 45 -   3067355 AAACCAGTCCAACCTAGTGCGGACCTTGCCAGGGGACCAGTGCCC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           152777 45 -    242197 AAATCAGACCAACCTAGTGCAGACCTTGACAGATGACCAGTGCCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     154914 44 -   1771730 AAATCAGTCCAACCTAGT-CAGACCTTGACAGATGACCAGTGCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     213824 45 -    457564 AAATCAGTCCAACCTAGTGCAGAACTTGACAGATGACCAGTGCCC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     509614 45 +    730504 AAATCAGTGCAACCTAATGCAGACCTAGCCAGATGGCCAGTGCCC
i proCoq1.NW_012152574v1   I 986 I 99
s mm10.chr17               57790959 43 -  94987271 GAGCCAGTCCAGC-TAATGCAAACCTAGCCAGGTCACCA-TGCCC
i mm10.chr17               C 0 C 0
e otoGar3.GL873550            67407 32175 +  18854210 T

a score=855001.000000
s hg38.chr6_GL000254v2_alt   820031  97 +   4827813 TCCCCGGGGCATTTCACCCATAAATGTGATGAGG-------AAAGCCCATAAATGGTGGTGAATTTTGCTGAGTGGGGTTAAGACTGGAAACCCCCCTGCAGGA
s panTro5.chr6             29782850  97 + 175400573 TCCCCGGGGCATTTCACCCATAAATGTGATGAGG-------AAAGCCCATAAATGGTGGTGAATTTTGCTGAGTGGGGTTAAGACTGGAAACCCCCCTGCAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30017459  97 + 173848474 TCCCCGGGGCATTTCACCCATAAATGTGATGAGG-------AAAGCCCATAAATGGTGGTGAATTTTGCTGAGTGGGGTTAAGACTGGAAACCCCCCTGCAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5820907  97 +   6154872 TCCCCGGGGCATTTCACCCATAAATGTGATGAGG-------AAAGCCCATAAATGGTGGTGAATTTTGCTGAGTGGGGTTAAGACTGGAAACCCCCCTGCAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74547087  97 + 122973662 TCCCCGGGGCATTTCACCCATAAATGTGATGAGG-------AAAGCCCATAAATGGTGGTGAATTTTGCTGAGTGGGGTTAAGACGGGAAACCCCCCTGCAGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30012464  97 + 172585720 TCCCCAGGGCATTTCACCCATAAGTGTGATGAGG-------AAAGCCCATAAGTGGTGGTGAATTTTGTTGAGTGGGGTTAAGATGGGAAACCCTCCTGCAGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29676360  97 - 170955103 TCCCCAGGGCATTTCACCCATAAGTGTGATGAGG-------AAAGCCCATAAGTGGTGGTGAATTTTGTTGAGTGGGGTTAAGATGGGAAACCCTCCTGCAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2722524  97 -   2996164 TCCCCAGGGCATTTCACCCATAAGTGTGATGAGG-------AAAGCCCATAAGTGGTGGTGAATTTTGTTGAGTGGGGTTAAGATGGGAAACCCTCCTGCAGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     472295  97 +    766320 TCCCCAGGGCATTTCACCCATAAGTGTGATGAGG-------AAAGCCCGTAAGTGGTGGTGAATTTTGCTGAGGGGGGTTAAGATGGGAAACCCTCCTGCAGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28929985  97 -  71996105 TCCCCAGGTCATTTCACCCATAAGTGTGATGAGG-------AAAGCCCATACGTGGTGGTGAATTTTGCTGAGCGGGGTTAAGATGGGAAACCCTCCTGCAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     106227  97 +    290775 TCCCCAGGGCATTTCACCCATAAGTGTGATGAGG-------AAAGCCCGTAAGTGGTGGTGAATTTTGCTGAGGGGGGTTAAGATGGGAAACCCTCCTGCAGGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2554083  97 -   3067355 TCCCTGGGGCATTTCACCCATAAGTGTGATGAGG-------AAAGCCCATACGTGGTGGTGAATTTTGCTGAGTGGGGTCAAGATGGGAAACCCTCCTGCAGGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           152822 104 -    242197 TCCCAAGGGCATTTCACTCTTAAGTGTGATGAAGAAAGCCCAAAGCCCATAAATGGTGGTGAATTTTGCTGAGTGCAGCTGAGATGGGAAACCCTCCTACACGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     154958  97 -   1771730 TCCCAGGAGCATTTCACTCTTAAGTGTGATAAGG-------AAAGCCCATAAATGGTGGTGAATTTTACTGAGTGCGGTTGAGATGGGAAACTCTCCTACAGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     213869  97 -    457564 TCCCAGGAGCATTTCACTCTTAAGTGTGATGAGG-------AAAGCCCATAAATGGTGGTGAATTTTGCTGAGTACGGTTGAGATGGGAAACCCTCCTACAGGA
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57791002  80 -  94987271 ACTACAGAACGT-----------------CAAAG-------AATGTCTGCAAATAATAGGCAATTGTGCTGGCCCTGGTTAAACTGGGACTCCCATCTGCCGGA
i mm10.chr17               C 0 I 40
e proCoq1.NW_012152574v1     509659  99 +    730504 I
e otoGar3.GL873550            67407 32175 +  18854210 T

a score=119385.000000
s hg38.chr6_GL000254v2_alt   820128 12 +   4827813 GTTGGTTCTTGA
s panTro5.chr6             29782947 12 + 175400573 GTTGGTTCTTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30017556 12 + 173848474 GTTGGTTCTTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5821004 12 +   6154872 GTTGGTTCTTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74547184 12 + 122973662 GTTGGTTCTTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30012561 12 + 172585720 GTTGGTTCTTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29676457 12 - 170955103 GTTGGTTCTTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2722621 12 -   2996164 GTTGGTTCTTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     472392 12 +    766320 GTTGGTTCTTGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28930082 12 -  71996105 GTTGGTTCTTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     106324 12 +    290775 GTTGGTTCTTGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2554180 12 -   3067355 GTTGGTTCTTGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           152926 12 -    242197 GTTGGTTCTTGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     155055 12 -   1771730 GTTGGTTCTTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     213966 12 -    457564 GTTGGTTCTTGA
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57791082 40 -  94987271 I
e proCoq1.NW_012152574v1     509659 99 +    730504 I
e otoGar3.GL873550            67407 32175 +  18854210 T

a score=723340.000000
s hg38.chr6_GL000254v2_alt   820140 73 +   4827813 GCAAGTTTTAAAG-AAACAAGGAACTAGGATGAGTGTGGAAGAAGGCGGGCACGTCTCAGCCCGTGAAAAAAAC
s panTro5.chr6             29782959 73 + 175400573 GCAAGTTTTAAAG-AAACAAGGAACTAGGATGAGTGTGGAAGAAGGCGGGCATGTCTCAGCCCGTGAAAAAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30017568 73 + 173848474 GCAAGTTTTAAAG-AAACAAGGAACTAGGATGAGTGTGGAAGAAGGCGGGCATGTCTCAGCCCGTGAAAAAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5821016 73 +   6154872 GCAAGTTTTAAAG-AAACAAGGAACTAGGATGAGTGTGGAAGAAGGCGGGCATGTCTCAGGCCGTGAAAAAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74547196 73 + 122973662 GCAAGTTTTAAAG-AAACAAGGAACTAGGGTGCGTGTGGAAGAAGGCAGGCATGTCTCAGGCCGTGAAAAAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30012573 73 + 172585720 ACAAGTTTTAAAG-AAACAAGGAACTAGGACGAGTGTGGAAGAAGGCGGGCATGTCTCAGGCTGTGAAAAAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29676469 73 - 170955103 ACAAGTTTTAAAG-AAACAAGGAACTAGGACGAGTGTGGAAGAAGGCGGGCATGTCTCAGGCTGTGAAAAAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2722633 73 -   2996164 ACAAGTTTTAAAG-AAACAAGGAACTAGGACGAGTGTGGAAGAAGGCGGGCATGTCTCAGGCTGTGAAAAAAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     472404 73 +    766320 ACAAGTTTTAAAG-AAACAAGGAACTAGGACGAGTGTGGAAGAAGGCGGGCATGTCTCAGGCTGTGAAAAAAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28930094 73 -  71996105 ACAAGTTTTAAAG-AAACAAGGAACTAGGACGAGTGTGGAAGAAGGCGGGCATGTCTCAGGCTGTGAAAAAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     106336 73 +    290775 ACAAGTTTTAAAG-AAACAAGGAACTAGGACGAGTGTGGAAGAAGGCGGGCATGTCTCAGGCTGTGAAAAAAAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2554192 73 -   3067355 ACAAGTTTTAAAG-AAACAAGGAACTAGGACGAGTGTGGAAGAAGGCGGGCATGTCTCAGGCTGTGAAAAAAAC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           152938 70 -    242197 GCAAGTTTTAAAG-AAACAAGGAACTAGGATGAGTGTGAAAGAAGGCAAGCATGTCTCAGGCTGTG--AAAAA-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     155067 71 -   1771730 GCAAGTTTTAAAG-AAACAAGGAACTAGGATGAGTGTGGAAGAAGGCAAGCATGTCTCAGGCTGTG-AAAAAA-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     213978 72 -    457564 GCAAGTTTTAAAG-AAACAAGGAACTAGGATGAGTGTGGAAGAAGGCAAGCATGTCTCAGGCTGTGAAAAAAA-
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     509758 74 +    730504 GCAAGTTTTAAAGAAAACAAGGAACTGGGACTGGTGGGGAAGAAGGCAGGCATGTCTCAGGCTGTGAGAAAAAC
i proCoq1.NW_012152574v1   I 99 I 39
e mm10.chr17               57791082 40 -  94987271 I
e otoGar3.GL873550            67407 32175 +  18854210 T

a score=321194.000000
s hg38.chr6_GL000254v2_alt   820213 53 +   4827813 TCACAGgtgatcagtagtgagtcatgagagaga------gagcaag--ag----agagagtcaga
s panTro5.chr6             29783032 53 + 175400573 TCACAGGTGATCAGTAGTGAGTCATgagagaga------gagcaag--ag----agacagtcaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30017641 53 + 173848474 TCACAGGTGATCAGTAGTGAGTCATgagagaga------gagcaag--ag----agacagtcaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5821089 53 +   6154872 TCACAagtgatcagtagtgagtcatgagagaga------gagcaag--ag----agagagtcaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74547269 55 + 122973662 TCACAGGTGATCAGTAGTGAGTCATgagagaga------gagcaagaaag----agagagtcaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30012646 51 + 172585720 TCACAGGTGATCAATagtgagacatgagagaga------gagagag--ca------agagtcaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29676542 53 - 170955103 TCACAGGTGATCAATagtgagacatgagagaga------gagagag--ca----agagagtcaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2722706 53 -   2996164 TCACAGGTGATCAATagtgagacatgagagaga------gagagag--ca----agagagtcaga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     472477 55 +    766320 TCACAGGTGATCAATagtgagacatgagagaga----gcgagagag--ca----agagagtcaga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28930167 53 -  71996105 TCACAGGGGATCAATagtgagacatgagcgaga------gagacag--ca----agagagtcaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     106409 55 +    290775 TCACAGGTGATCAATagtgagacatgagagaga----gcgagagag--ca----agagagtcaga
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2554265 63 -   3067355 TCACAGGTGATCAATagtgagacatgagagagagagagagagagag--caagaaagagagtcaga
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           153008 48 -    242197 --ACAAGTGATCAGTTGTGAGACATGAAAGAAC------AAGAGAG--AG----AGAG---TAAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     155138 43 -   1771730 --ACAAGTGATCAGTTGTGAGACATGAAAGAAC------AAGAGAG--AG----AG--------T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     214050 43 -    457564 --ACAAGTGATCAGTTGTGAGACATGAAAGAAC------AAGAGAG--AG----AG--------T
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57791082 40 -  94987271 I
e proCoq1.NW_012152574v1     509832 39 +    730504 I
e otoGar3.GL873550            67407 32175 +  18854210 T

a score=651818.000000
s hg38.chr6_GL000254v2_alt   820266 84 +   4827813 gagaggagtaaatggagggaggaagatggaggaagggaCTCAAGTTCTCAAGACAGGAACAGGGATCTCCTCATG-AAAAAAAGA
s panTro5.chr6             29783085 84 + 175400573 gagaggagTAAATGGAGGGAGGAAGATGGAGGAAGGGACTCAAGTTCTCAAGACAGGAACAGGGATCTCCTCATG-AAAAAAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30017694 84 + 173848474 gagaggagTAAATGGAGGGAGGAAGATGGAGGAAGGGACTCAAGTTCTCAAGACAGGAACAGGGATCTCCTCATG-ACAAAAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5821142 84 +   6154872 gagaggagtaaatggagggaggaagatggaggaagggaCTCAAGTTCTCAAGACAGGAACAGGGATCTCCTCATG-AAAAAAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74547324 81 + 122973662 gagaggagTAAAT---GGGAGGAAGATGGAGGAAGGGACTCAAGTTCTCAAGACAGGAACAGGGATCTCCTCATG-AAAAAAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30012697 75 + 172585720 aagaggagTAAATGGAGGGAGGAAGATGGAGG---------AAGTTCTCAAGACAGGAACAGGGATCTACTCATG-AAAAAAAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29676595 75 - 170955103 aagaggagTAAATGGAGGGAGGAAGATGGAGG---------AAGTTCTCAAGACAGGAACAGGGATCTACTCATG-AAAAAAAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2722759 75 -   2996164 aagaggagTAAATGGAGGGAGGAAGATGGAGG---------AAGTTCTCAAGACAGGAACAGGGATCTACTCATG-AAAAAAAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     472532 85 +    766320 aagaggagTAAATGGAGGGAGGAAGATGGAGGAAGGTACTCAAGTTCTCAAGACAGGAACAAGGATCTACTCATGAAAAAAAAGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28930220 85 -  71996105 aagaggagTAAATGGAGGGAGGAAGATGGAGGAAGGGACTCAAGTTCTCAAGACAGGAACAGGGATCTACTCATGAAAAAAAAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     106464 85 +    290775 aagaggagTAAATGGAGGGAGGAAGATGGAGGAAGGTACTCAAGTTCTCAAGACAGGAACAAGGATCTACTCATGAAAAAAAAGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2554328 85 -   3067355 aagaggagTAAATGGAGGGAGGAAGATGGAGGAAGGGACTCAAGTTCTCAAGACAGGAACAGGGATCTACTCATGAAAAAAAAGC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           153056 70 -    242197 TGGAGGAATAAAT--------------GGAGGAAGGGACTCAAGTTCTCAAGACAGGAACAGTGATCTTCTAATGAAAAAAAAA-
i saiBol1.JH378357         C 0 I 2
s cebCap1.NW_016107755v1     155181 69 -   1771730 CAGAGGAATAAAT--------------GGAGGAATGGACTCAAGTTCCCAAGACAGGAACAGGGATCTTCTAATG-AAAAAAAA-
i cebCap1.NW_016107755v1   C 0 I 2
s aotNan1.NW_018509740v1     214093 70 -    457564 CAGAGGAATAAAT--------------GGAGGAAGGGACTCAAGTTCTCAAGACAGGAACAGGGATCTTCAAATGAAAAAAAAA-
i aotNan1.NW_018509740v1   C 0 I 1830
s proCoq1.NW_012152574v1     509871 83 +    730504 GAGAGGAGTAAATGGAGGGAGGAAGATGGAGGAAGGTACTCAAGTTCCCAAGAGAGGAGCAGGGATCTCCTAATG-AAAGAAGC-
i proCoq1.NW_012152574v1   I 39 C 0
e mm10.chr17               57791082 40 -  94987271 I
e otoGar3.GL873550            67407 32175 +  18854210 T

a score=3100490.000000
s hg38.chr6_GL000254v2_alt   820350 321 +   4827813 AGAGAGGAAAATGCTCAATCAG-CAGAACCTGAGCAGAATATTGAGGTCAACCCAGAAGCCAGCTCCTCACCCACCCTCACCCAGACT-----GGCGCCCTCATCCTGGAGAAGACCTGCTAGACCCTAAGGCAGGTAGGAGAGAGGGTGGTCCACAGTCCCCCAGC-TTTAGAAAGTTTGTTCGCTCCCAATGTCCATCTACCC-CTAGGAATCCCCACTAGTT-AAACAGAATTGCTAGATCCCTGTGGAAAATACCTTTCCTTGCCCACCATCATCCCCAGAAATAATAACTATTTTAGTTGGGTGTGAGACATAGAGAATAAAAGG
s panTro5.chr6             29783169 321 + 175400573 AGAGAGGAAAATGCTCAATCAG-CAGAACCTGAGCAGAATATTGAGGTCAACCCAGAAGCCAGCTCCTCACCCACCCTCACCCAGACT-----GGCGCCCTCATCCTGGAGAAGACCTGCTAGACCCTAAGGCAGGTGGGAGAGAGGGTGGTCCACAGTCCCCCAGC-TTTAGAAAGTTTGTTCGCTCCCAATGTCCATCTACCC-CTAGGAATCCCCACTAGTT-AAACAGAATCGCTAGATCCCTGTGGAAAATACCTTTCCTTGCCCACCATCATCCCCAGAAATAATAACTATTTTAGTTGGGTGTGGGACATAGAGAATAAAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30017778 321 + 173848474 AGAGAGGAAAACGCTCAATCAG-CAGAACCTGAGCAGAATATTGAGGTCAACCCAGAAGCCAGCTCCTCACCCACCCTCACCCAGACT-----GGCGCCCTCATCCTGGAGAAGACCTGCTAGACCCTAAGGCAGGTAGGAGAGAGGGTGGTCCACAGTCCCCCAGC-TTTAGAAAGTTTGTTCGCTCCCAATGTCCATCTACCC-CTAGGAATCCCCACTAGTT-AAACAGAATCGCTAGATCCCTGTGGAAAATACCTTTCCTTGCCCACCATCATCCCCAGAAATAATAACTATTTTAGTTGGGTGTGGGACATAGAGAATAAAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5821226 321 +   6154872 AGAGAGGAAAATGCTCAATCAG-CAGAACCTGAGCAGAATATTGAGGTCAACCCAGAAGCCAGCTCCTCACCCACCCTCACCTAGACT-----GGCGCCCTCATCCTGGAGAAGACCTGCTAGACCCTAAGGCAGGTAGGAGAGAGGGTGGTCCACAGTCCTCCAGC-TTTAGAAAGTTTGTTCGCTCCCAATGTCCATCTGCCC-CTAGGAATCCCCACTAGTT-AAACAGAATCGCTAGATCCCTGTGGAAAATACCTTTCCTTGCCCACCATCATCCCCAGAAATAATAACTATTTTAGTTGGGTGTGGGACATAGAGAATAAAAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74547405 321 + 122973662 AGAGAGGAAAATGCTCAATCAG-CAGAACCTGAGCAGAATATTGAGGTCAACCCAGAAGCCAGCTCCTCACCCACCCTCACCCAGACT-----GGCGCCCTCATCCTGGAGAAGACCTGCTAGACCCTAAGGCAGGTAGGAGAGAGGGTGGTCCACAGTTCCCCAGC-TTTAGAAACTTTGTTCGCTCCCAATGTCCATCTACCC-CTAGGAATCCCCACTAGTT-AAACAGAATCGCTAGATCCCTGTGGAAAATACCTTTCCTTGCCCACCATCATCCCCAGAAATAATAACTATTTTAGTTGGGTGTGGGACATAGAGAATAAAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30012772 321 + 172585720 AGAGAGAAAAATGCTCAATCAG-CAGAACCTGAGCAGAATATTGAGGTCAATCCAGAAGCCAGCTCCTCACCCACCCTCGCCCAGACC-----AGCACCCTTATCATACGGAAGACCTGCTAGACCCTATGGCAGGTAGGAGAGAGGGTGGTCCACAGTCCCCCAGC-TTCAGAAAGTTTGTTCTCTCCCGGTGTCCATCTACCC-CTAGGAACCCCCACTAGTT-ACACACAATCACTAGATCCCTGTGGAAAATACCTTTCCTTGCCCACCAACATCCCCATAAATAATAACTATTTTAGTTGGGTGTGGGACATAGAGAGTGGGAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29676670 321 - 170955103 AGAGAGAAAAATGCTCAATCAG-CAGAACCTGAGCAGAATATTGAGGTCAATCCAGAAGCCAGCTCCTCACCCACCCTCGCCCAGACC-----GGCACCCTTATCATACAGAAGACCTGCTAGGACCTAAGGCAGGTAGGAGAGAGGGTGGTCCACAGTCCCCCAGC-TTCAGAAAGTTTGTTCTCTCCCGGTGTCCATCTACCC-CTAGGAACCCCCACTAGTT-ACACACAATCACTAGATCCCTGTGGAAAATACCTTTCCTTGCCCACCAACATCCCCATAAATAATAACTATTTTAGTTGGGTGTGGGACATAGAGAGTGGGAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2722834 321 -   2996164 AGAGAGAAAAATGCTCAATCAG-CAGAACCTGAGCAGAATATTGAGGTCAATCCAGAAGCCAGCTCCTCACCCACCCTCGCCCAGACC-----GGCACCCTTATCATACAGAAGACCTGCTAGACCCTATGGCAGGTAGGAGAGAGGGTGGTCCACAGTCCCCCAGC-TTCAGAAAGTTTGTTCTCTCCCGGTGTCCATCTACCC-CTAGGAACCCCCACTAGTT-ACACACAATCACTAGATCCCTGTGGAAAATACCTTTCCTTGCCCACCAACATCCCCATAAATAATAACTATTTTAGTTGGGTGTGGGACATAGAGAGTGGGAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     472617 321 +    766320 AGAAAGAAAAATGCTCAATCAG-CAGAACCTGAGTAGAATATTGAGGTCAATCCAGAAGCCAGCTCCTCACCCACCCTCACCCAGACT-----GGCACCCTCATCATACAGAAGACCTGCTAGACCCTACGGCAGGTAGGAGAGAGGGTGGTCCACAGTCCCCCAGC-TTCAGAAAGTTTGTTCTCTCCCAGTGTCCATCTACCC-CTAGGAACCCCCACTAGTT-ACACACAATCACTAGATCCCTGTGGAAAATACCTTTCCTTGCCCACCATCATCCCCATAAATAATAACCATTTTAGTTGGGTGTGGGACATAGAGAGTGGGAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28930305 321 -  71996105 AGAGAGAAAAATGCTTAATCAG-CAGAACCTGAGCAGAATATTGAGGTCAATCCAGAAGCCAGCTCCTCACCTACCCTCACCCAGACT-----GGCACCCTCATCATGCAGAAGACCTGCTAGACCCTAAGGCAGGTAGGAGAGAGGGTGGTCCACAGTCTCCCAGC-TTCAGAAAGTTTGTTCTCTCCCAGTGTCCATCTACCC-CTAGGAATCCCCACTAGCT-ACACACAATCACTAGATCCCTGTGGAAAACACCTTTCCTTGCCCACTAACATCTCCATAAATAATAACCATTTTAGTTGGGTGTGGGACATAGAGAATGGGAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     106549 321 +    290775 AGAAAGAAAAATGCTCAATCAG-CAGAACCTGAGTAGAATATTGAGGTCAATCCAGAAGCCAGCTCCTCACCCACCCTCACCCAGACT-----GGCACCCTCATCATACAGAAGACCTGCTAGACCCTACAGCAGGTAGGAGAGAGGGTGGTCCACAGTCCCCCAGC-TTCAGAAAGTTTGTTCTCTCCCAGTGTCCATCTACCC-CTAGGAACCCCCACTAGTT-ACACACAATCACTAGATCCCTGTGGAAAATACCTTTCCTTGCCCACCATCATCCCCATAAATAATAACCATTTTAGTTGGGTGTGGGACATAGAGAGTGGGAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2554413 321 -   3067355 AGAGAGAAAAATGCTCAATCAA-CAGAACCTGAGCAGAATATTGAGGTCAATCCAGAAGCCAGCTCCTCACCCACCCTCACCCAGACT-----GGCACCTTCATCATGCAGAAGACCTGCTAGACCCTACGGCAGGTAGGAGAGAGGGTGGTCCACAGGCCCCCAGC-TTCAGAAAGTTTGTTCTCTCCCAGTGTCCATCTACCC-CTAGGAACCCCCACTAGTT-ACACACAATCACTAGATCCCTGTGGAAAATACCTTTCCTTGCCCACCATCATCCCCATAAATAATGACTATTTTAGTTGGGTGTGGGACATAGAGAATAGGAGG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           153128 320 -    242197 AGAGAGGAAAATATTCAATCAG-CAGAACCTGACCAGAATATTGAGGACAACCCAGAAGCCAGCTCCTCACCCACCCTCACCCAGATT-----GGTGCTCTCATCCTGGAGAAGACCTGACAGACCCTAAGACAGGTAGGAGAGATGGTGGCCCACAGTCCCCTAGC-TCCAGAAAGTTTGTTCCCTCCCAATGTACATCTACCC-CTAGGAACCCTCACTAGTG-ACACAGAATCACTAGGTCCCTGTGGAAAATACCTATCCTTGCCCACCATCATCCTCAG-AATAATAACTATTTTAGTTGGGTGTGAGACATAAAGAATAAGAGA
i saiBol1.JH378357         I 2 C 0
s cebCap1.NW_016107755v1     155252 321 -   1771730 AGAGAAGAAAATGCTCAATGAG-CAGAACCTGACCAGAATATTGAGGACAACCCAGAAGCCAGCTCCTCACCCACCCTCACCCAGACT-----GGTGCCCTCATCCTGGAGAAGACCTGACAGACCCTAAGACAGGTAGGAGAGATGGTGGCCCACAGTCCCCCATC-TACAGAAAGTTTGTTCCCTCCCAATGTCCATCTACCC-CTAGGAACCCTCACTAGTT-ACACAGAATCACTAGGTCCCTGTGGAAAATACCTATCCTTGCCCACCACCATCCCCAGAAATAATAACTATTTTAGTTGGGTGTGGGACATAAAGAATAAGAGA
i cebCap1.NW_016107755v1   I 2 C 0
s aotNan1.NW_018509740v1     215993 322 -    457564 AGAGAGGAAAATGCTCAATCAG-CAGAACCTGACCAGAATATTGAGGACAACCCAGAAGCCAGCTCCTCACCCACCCTCACCCAGACT-----GGTGCCCTCATCCTGGAGAAGACCTGACAGACCCTAAGACAGGTAGGAGAGATGGTGGCCCACAGTCCCCCAGC-TACAGAAAGTTTGTTCCCTCCCGATGTCCATCTACCC-CTAGGAACCCTCACTAGTTAACGCAGAATCACTAGGTCCCTGTGGAAAATACCTATCCTTGTCCACCATCATCCCCAGAAATAATAACTATTTTAGTTGGGTGTGGCACATAAAGAATAAGAGA
i aotNan1.NW_018509740v1   I 1830 C 0
s proCoq1.NW_012152574v1     509954 325 +    730504 AGAGAGGAAAATGCTCCATCAGCCAGAACTGGAGCAGAGTGTTGGGGTCAACCCAGAAGCCAGCTCCTTACC-ACCCTCACCCAGACTGACACGACACCCTCAGCCTAGAAGAAACCTGCTAGACCCTAAGACAAGCAGGACAGAGACTGGTCCACAATCCCACACCTTTCAGAAAGTTTATTCCCTCCCAAAGCACATCTACCTACAAAGAGCCCCAACTAGAG-AAACAAGATTTCTAGATCCTCATGGAAAATATCTTTCCATGCCCAC---CATCCCCAGAAATAAGAGCAATTTTAGCTGGGTGTGGAACATCAAGAATAAAAGG
i proCoq1.NW_012152574v1   C 0 C 0
e mm10.chr17               57791082  40 -  94987271 I
e otoGar3.GL873550            67407 32175 +  18854210 T

a score=231362.000000
s hg38.chr6_GL000254v2_alt   820671 28 +   4827813 GGGCATGGTGCCAGACTTCATTTCATA-C
s panTro5.chr6             29783490 28 + 175400573 GGGCATGGTGCCAGACTTCATTTCATA-C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30018099 28 + 173848474 GGGCATGGTGCCAGACTTCATTTCATA-C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5821547 28 +   6154872 GGGCATGGTGCCAGACTTCATTTCATA-C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74547726 28 + 122973662 GGGCATGGTGCCAGACTTCATTTCATA-C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30013093 29 + 172585720 GGGCATGGTGCCAGACTTCATTTCATACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29676991 29 - 170955103 GGGCATGGTGCCAGACTTCATTTCATACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2723155 29 -   2996164 GGGCATGGTGCCAGACTTCATTTCATACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     472938 29 +    766320 GGGCATGGTGCCAGACTTCATTTCATACC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28930626 29 -  71996105 GGGCATGATGCCAGACTTCATTTCATACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     106870 29 +    290775 GGGCATGGTGCCAGACTTCATTTCATACC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2554734 29 -   3067355 GGCCATGGTGCCGGACTTCATTTCATACC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           153448 22 -    242197 AG-------GCCAGACTTTATTTCATACC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     155573 22 -   1771730 AG-------GCCAGACTTTATTTCATACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     216315 22 -    457564 AG-------GCCAGACTTTATTTCATACC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     510279 28 +    730504 CAGTATGGTGCCAGACTTCATTTCATAC-
i proCoq1.NW_012152574v1   C 0 I 14
s mm10.chr17               57791122 28 -  94987271 GGAGAGGGTGTTAGGTTTTATTTCATAC-
i mm10.chr17               I 40 I 1
e otoGar3.GL873550            67407 32175 +  18854210 T

a score=172768.000000
s hg38.chr6_GL000254v2_alt   820699 19 +   4827813 AAATAGCTTTAAAGGAGAA
s panTro5.chr6             29783518 19 + 175400573 AAATAGCTTTAAAGGAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30018127 19 + 173848474 AAATAGCTTTAAAGGAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5821575 19 +   6154872 AAATAGCTTTAAAGGAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74547754 19 + 122973662 AAATAGTTTTAAAGGAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30013122 19 + 172585720 AAATAGCCTTAAAGGAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29677020 19 - 170955103 AAATAGCCTTAAAGGAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2723184 19 -   2996164 AAATAGCCTTAAAGGAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     472967 19 +    766320 AAATAGCCTTAAAGGAGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28930655 19 -  71996105 AAATAGCCTTAAAGGAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     106899 19 +    290775 AAATAGCCTTAAAGGAGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2554763 19 -   3067355 GAATAGCCTTAAAGGAGAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           153470 19 -    242197 AAATAGCTTTAAAGGAAAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     155595 19 -   1771730 AAATAGCTTTAAAAGAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     216337 19 -    457564 AAATAGCTTTAAAGGAAAA
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57791151 15 -  94987271 AAATATCTTTAAGAA----
i mm10.chr17               I 1 C 0
e proCoq1.NW_012152574v1     510307 14 +    730504 I
e otoGar3.GL873550            67407 32175 +  18854210 T

a score=2713737.000000
s hg38.chr6_GL000254v2_alt   820718 302 +   4827813 G-----AGG--------GGGGAAGGAGTTTAATTTAGTTTCTAAAATGTTTAGTAATTTGATTGTGATCATGTCAGAGCAACTAATT-CATTTTATAAAATATCATTTCACTATGCTCTATAAGTAGAAATTCAATTTGGTTCAACCATTATTGAGTGA---TATAAATAAAGCACTGGACTTAACAAAGACAGAAATACAGAAATCAGTAGAACATGGATCCCAACCTAAAACTTACTCTCTTGTCATAAAGGAAAGGAGATAGGAGTTTTTGCATAAATAACAAGG--TATCAAGACAGAATTAAATTCCAAGCTGGCT
s panTro5.chr6             29783537 302 + 175400573 G-----AGG--------GGGGAAGGAGTTTAATTTAGTTTCTAAAATGTTTAGTAATTTGATTGTGATCATGTCAGAGCAACTAATT-CATTTTATAAAATATCATTTCACTATGCTCTATAAGTAGAAATTCAATCTGGTTCAACCATTATTGAGTGA---TATAAATAAAGCACTGGACTTAACAAAGACAGAAATACATAAATCAGTAGAACATGGATCCCAACATAAAACTTACTCTCTTGTCGTAAAGGAAAGGAGATAGGAGTTTTTGCATAAATAACAAGG--TATCAAGACAGAATTAAATTCCAAGCTGGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30018146 302 + 173848474 G-----AGG--------GGGGAAGGAGTTTAATTTAGTTTCTAAAATGTTTAGTAATTTGATTGTGATCATGTCAGAGCAACTAATT-CATTTTATAAAATATCATTTCACTATGCTCTATAAGTAGAAATTCAATCTGGTTCAACCATTATTGAGTGA---TATAAATAAAGCACTGGACTTAACAAAGACAGAAATACAGAAATCAGTAGAACATGGATCCCAACATAAAACTTACTCTCTTGTCGTAAAGGAAAGGAGATAGGAGTTTTTGCATAAATAACAAGG--TATCAAGACAGAATTAAATTCCAAGCTGGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5821594 302 +   6154872 G-----AGG--------GGGGAAGGAGTTTAATTTAGTTTCTAAAATGTTTAGTAATTTCATTGTGATCATGTCAGAGCAACTAATT-CATTTTATAAAATATCATTTCACTATGCTCTATAAGTAGAAATTCAATTTGGTTCAACCATTATTGAGTGA---TATAAATAAAGCACTGGACTTAACAAAGACAGAAATACAGAAATCAGTAGAACATGGATCCCAACCTAAAACTTACTCTCTTGTCGTAAAGGAAAGGAGATAGGAGTTTTTGCATAAATAACAAGG--TATCAAGACAGAATTACATTCCAAGCTGGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74547773 297 + 122973662 G-----AGG--------GGGGAAGGAGTTTAATTTAGTTTCTAAAATGTTTAGTAATTTGATTGTGATCATGTGAGAGCAACTAATT-CATTTTATAAAAAATCATTTCACTATGCTCTATAAGTAGAAATTCAATTTGATTCAACCATTATTGAGTGA---TATAAATAAAGCACTGAACTTAACAAAGACAGAAATACAGAAATCAGTAGAACATGGATCCGAACCTAAAACTTACTCTCTTGTCAT-----AAAGGAGATAGGAGTTTTTCCATAAATAACAAGG--TATCAAGAAAGAATTAAATTCCAAGCTGGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30013141 298 + 172585720 G-----AGG--------GGGAAAGGAGCTCAATTTAGTTTCTAAAATGTTTAGTAATTTGATTATGATCATGTCAGAGCAACTAATT-CATTTTAAAATAAATCATTTCACTATGCTCTGTAAGTAGAAATTCATTTTGATTCAACCATTATTGAGTGA---TATAAATAAAGCACTGGGCTTAACAAACACAGAAATTCAGAAATCAGTAGAACATGGATCCCAACCTAAA----ACTCTCTTGTCAAAAAGGAAAGGAGATAGGAGTTTTTCCATAAATAACAAGG--TATCAAGAAAGAATTAAATTGCAAGCTGGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29677039 298 - 170955103 G-----AGG--------GGGAAAGGAGCTCAATTTAGTTTCTAAAATGTTTAGTAATTTGATTATGATCATGTCAGAGCAACTAATT-CATTTTAAAATAAATCATTTCACTATGCTCTGTAAGTAGAAATTCATTTTGATTCAACCATTATTGAGTGA---TATAAATAAAGCACTGGGCTTAACAAACACAGAAATTCAGAAATCAGTAGAACATGGATCCCAACCTAAA----ACTCTCTTGTCAAAAAGGAAAGGAGATAGGAGTTTTTCCATAAATAACAAGG--TATCAAGAAAGAATTAAATTGCAAGCTGGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2723203 298 -   2996164 A-----AGG--------GGGAAAGGAGCTCAATTTAGTTTCTAAAATGTTTAGTAATTTGATTATGATCATGTCAGAGCAACTAATT-CATTTTAAAATAAATCATTTCACTATGCTCTGTAAGTAGAAATTCATTTTGATTCAACCATTATTGAGTGA---TATAAATAAAGCACTGGGCTTAACAAACACAGAAATTCAGAAATCAGTAGAACATGGATCCCAACCTAAA----ACTCTCTTGTCAAAAAGGAAAGGAGATAGGAGTTTTTCCATAAATAACAAGG--TATCAAGAAAGAATTAAATTGCAAGCTGGCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     472986 302 +    766320 G-----AGG--------GGGAAAGGAGCTCAATTTAGTTTCTAAAATGTTTAGTAATTTGATTATGATCATGTCAGAGCAACTAATT-CATTTTAAAATAAATCATTTCACTATGCTCTGTAAGTAGAAATTCAATTTGATTCAACCATTATTGAGTGA---TATAAATAAAGCACTGGGCTTAACAAACACAGAAATTCAGAAATCAGTAGAACATGGATCCCAACCTAAAACTTACTCTCTTGTCAAAAAGGAAAGGAGATAGGAGTTTTTCCATAAATAACAAGG--TCTCAAGAAAGAATTAAATTGCAAGCTGGCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28930674 301 -  71996105 G-----AGG--------GGGAAAGGAGCTCAATTTAGTTTCTAAAATGTTTAGTAATTTGATTATGATCATGTCAGAGCAACTAATT-CATTTTAAAATAAAT-ATTTCACTATGCTCTGTAACTAGAAATTCAATTTGGTTCAACCATTATTGAGTGA---TATAAATAAAGCACTGGGCTTAACAAACACAGAAATTCAGAAATCAGTAGAACATGGATCCCAACCTAAAACTTACTCTCTTGTCAAAAAGGAAAGGAGATAGGAGTTTTTCCATAAATAACAAGG--TATCAAGAAAGAATTAAATTGCAAGCTGGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     106918 302 +    290775 G-----AGG--------GGGAAAGGAGCTCAATTTAGTTTCTAAAATGTTTAGTAATTTGATTATGATCATGTCAGAGCAACTAATT-CATTTTAAAATAAATCATTTCACTATGCTCTGTAAGTAGAAATTCAATTTGATTCAACCATTATTGAGTGA---TATAAATAAAGCACTGGGCTTAACAAACACAGAAATTCAGAAATCAGTAGAACATGGATCCCAACCTAAAACTTACTCTCTTGTCAAAAAGGAAAGGAGATAGGAGTTTTTCCATAAATAACAAGG--TATCAAGAAAGAATTAAATTGCAAGCTGGCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2554782 304 -   3067355 G-----AGG--------GGGAAAGGAGCTCAATTTAGTTTCTAAAATGTTTACTAATTTGATTATGATCATGTCAGAGCAACTAATT-CATTTTAAAATAAATCATTTCACTATGCTCTGTAAGTAGAAATTCAATTTGGTTCAACCATTATTGAGTGA---TATAAATAAAGCACTGGGCTTAACAAAGACAGAAATACAGACATCAGTAGAACATGGATCCCAACCTAAAACTTACTCTCTTGTCAAAAATGAAAGGAGATAGGAGTTTTTCCATAAATAACAAGGTATATCAAGAAAGAATTAAATTGCAAGCTGGCT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           153489 299 -    242197 GGGAT-GGGGGAGTGTAGGGGAGGTAGCTTAATTTAATTTCTAAAATATTTAGTAATTTG----TGATCATGTCGGAGAAATCAATT-CATTTTATAATAAATCATTTCACTGTGCTCTATAAATAGAAATTCAGTTTGGTTCAAACATTGTTGAGTGA---TATAAATAAAGCACTGGTCTTAACAAAGACAGAA--------ATCAGTAGAACATAGATCCAGACCTAAAACTGACTCTCTTGTCGTAAAGGA---AAGATAGGAGTTTTTCCATAAATAACAAGG--TATCAAGAAAGAATTAAATTCCAAGCTGGCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     155614 303 -   1771730 GGGGTGGGGGGAGTGTAGGGGAAGTAGCTTAATTTAACTTCTAAGGTATTTAGTGATTTG----TGATCATGTCAGATAAATTAATT-CATTTTATAATAAATCATTTCACTATGTTCTATAAATAGAAATTCAATTTGGTTCAGACATTGTTGAGTGA---TATAAATAAAGCACTGGTCTTAACAAAGACAGAA--------ATCAATAGAACATGGATCCAAACCTAAAACTGACTCTCTTGTCATAAAGGAAAGAAGATAGGAGTTTTTCCATAAATAACAAGG--TATCAAGAAAGAATTAAATTGCAAGCTGGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     216356 298 -    457564 G-----GGGGTGGGGTAGGAGAAGTAGCTTAATTTAATTTCTAAAATATATAGTAATTTGATTATGATCATGTCAGAGAAATTAATT-CATTTTATAATAAATTATTTCACTATGCTCTATAAATAGAAGTTCAATTTGGTTCAAACATTGTTGAGTGA---TATAAATAAAGCACTGGTCTTAACAAAGAC------------ATCAGTAGAACATGGAGCCAAACCTAAAACTGACTCTCTTGTCATAAAGGAAAGAAGATAGGAGTTTTTCCATAAATAACAAGG--TATCAAGAAAGAATTAAATTCCAAGCTGGCT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     510321 299 +    730504 G-----AGA--------GAGGAAGAAGTTTAATGGAATTTTCAAAATACTTATTAATTACATTGTGATCATGTCAGAGTAATTAATT-CACTTCATAATAAATCATTTCACTATGCTCTATAAGTAGAAATTCAGCTTGATTCAACAATAATTGAGTGATACTATAAATGAAGCATTGGGTTTAACAATGATAGGAACACAGAAATTAATAGAACATGGATCCCAACATAAAACT-ATTCTTTTGTCATATAGGAAAGGAAATAGGAGTTTTTCTATAAATCAGAAGG--TACCAAGAAAGGATTAAGTTTCA-----GCT
i proCoq1.NW_012152574v1   I 14 C 0
s mm10.chr17               57791166 166 -  94987271 -------------------GATGATGACTGAATTT--------AAATA---ATTTATTAGACTATGATCCAGTTATGGTAAACAATCATATTCCATAACACATTCTTTCTCTATACTCTATAATTA-AAATTCAATTTGGTTCAACAATCATTCATTGa---tcca------------------------------------------------------------------------------------------------------ccttcccctgcatcccaagt--cct------ggaattaagtt-----------
i mm10.chr17               C 0 C 0
e otoGar3.GL873550            67407 32175 +  18854210 T

a score=123536.000000
s hg38.chr6_GL000254v2_alt   821020 11 +   4827813 TTGAATGCTCT
s panTro5.chr6             29783839 11 + 175400573 TTGAATGCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30018448 11 + 173848474 TTGAATGCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5821896 11 +   6154872 TTGAATGCTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74548070 11 + 122973662 TTGAATGCTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30013439 11 + 172585720 TTGAATGCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29677337 11 - 170955103 TTGAATGCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2723501 11 -   2996164 TTGAATGCTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     473288 11 +    766320 TTGAATGCTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28930975 11 -  71996105 TTGAATGCTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     107220 11 +    290775 TTGAATGCTCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2555086 11 -   3067355 TTGAATGCTCT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           153788 11 -    242197 TTGGATGCTCT
i saiBol1.JH378357         C 0 I 4
s cebCap1.NW_016107755v1     155917 11 -   1771730 TTGGATGCTCT
i cebCap1.NW_016107755v1   C 0 I 4
s aotNan1.NW_018509740v1     216654 11 -    457564 TTGTATGCTCT
i aotNan1.NW_018509740v1   C 0 I 365
s proCoq1.NW_012152574v1     510620 11 +    730504 TTAAATGCTAT
i proCoq1.NW_012152574v1   C 0 I 4
s otoGar3.GL873550            35232 11 +  18854210 TTGAATGCTAT
i otoGar3.GL873550         T 32175 I 4
s mm10.chr17               57791332  6 -  94987271 -----tgcacc
i mm10.chr17               C 0 C 0

a score=139486.000000
s hg38.chr6_GL000254v2_alt   821031 16 +   4827813 ATTTTGCCT---TAAAAAT
s panTro5.chr6             29783850 16 + 175400573 ATTTTGCCT---TAAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30018459 16 + 173848474 ATTTTGCCT---TAAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5821907 16 +   6154872 ATTTTGCCT---TAAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74548081 16 + 122973662 ATTTTGCCT---TAAAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30013450 16 + 172585720 ATTTTGCCT---TAAAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29677348 16 - 170955103 ATTTTGCCT---TAAAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2723512 16 -   2996164 ATTTTGCCT---TAAAATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     473299 16 +    766320 ATTTTGCCT---CAAAATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28930986 16 -  71996105 ATTTTGCCT---TAAAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     107231 16 +    290775 ATTTTGCCT---TAAAATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2555097 16 -   3067355 ATTTTGCCT---TAAAATT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           153803 16 -    242197 GTTATGCCT---TAAAATT
i saiBol1.JH378357         I 4 C 0
s cebCap1.NW_016107755v1     155932 16 -   1771730 GTTATGCCT---TAAAAAT
i cebCap1.NW_016107755v1   I 4 I 314
s proCoq1.NW_012152574v1     510635 16 +    730504 AATGTGCCT---TAAACAT
i proCoq1.NW_012152574v1   I 4 C 0
s otoGar3.GL873550            35247 16 +  18854210 AATGTGCCT---TAAAATT
i otoGar3.GL873550         I 4 C 0
s mm10.chr17               57791338 19 -  94987271 accacacctgactAAAGGT
i mm10.chr17               C 0 C 0
e aotNan1.NW_018509740v1     216665 365 -    457564 I

a score=99423.000000
s hg38.chr6_GL000254v2_alt   821047 11 +   4827813 TTATTTACTAG
s panTro5.chr6             29783866 11 + 175400573 TTATTTACTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30018475 11 + 173848474 TTATTTACTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5821923 11 +   6154872 TTATTTACTAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74548097 11 + 122973662 TTATTTACTAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30013466 11 + 172585720 TTATTTACTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29677364 11 - 170955103 TTATTTACTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2723528 11 -   2996164 TTATTTACTAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     473315 11 +    766320 TTATTTACTAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28931002 11 -  71996105 TTATTTACTAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     107247 11 +    290775 TTATTTACTAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2555113 11 -   3067355 TTATTTACTAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           153819 11 -    242197 TTATTTTCTgg
i saiBol1.JH378357         C 0 I 308
s cebCap1.NW_016107755v1     156262 11 -   1771730 TTATTTTCTAT
i cebCap1.NW_016107755v1   I 314 C 0
s proCoq1.NW_012152574v1     510651 11 +    730504 TCATTTTCTAT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            35263 11 +  18854210 TTATTTTCTAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57791357 11 -  94987271 TCAGCTTTTGC
i mm10.chr17               C 0 C 0
e aotNan1.NW_018509740v1     216665 365 -    457564 I

a score=251648.000000
s hg38.chr6_GL000254v2_alt   821058 29 +   4827813 TCTCAGTAATACATTAGTAAAAATCATGT
s panTro5.chr6             29783877 29 + 175400573 TCTCAGTAATACATTATTAAAGATCATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30018486 29 + 173848474 TCTCAGTAATACATTATTAAAGATCATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5821934 29 +   6154872 TCTCAGTAATACATTATTAAAAATCATGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74548108 29 + 122973662 TCTAAGTAATACATTATTAAAAATCATGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30013477 29 + 172585720 TCTCAGTAATACATTATTAAAAATCCTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29677375 29 - 170955103 TCTCAGTAATACATTATTAAAAATCCTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2723539 29 -   2996164 TCTCAGTAATACATTATTAAAAATCCTGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     473326 29 +    766320 TCTCAGTAATACATTATTAAAAATCCTGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28931013 29 -  71996105 TCTCAGTAATACATTATTAAAAATCCTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     107258 29 +    290775 TCTCAGTAATACATTATTAAAAATCCTGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2555124 29 -   3067355 TCTCAGTAATACACTATTAAAAATCCTGC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           154138 28 -    242197 TCTCAGTAATACATT-TTAAATATCCTGC
i saiBol1.JH378357         I 308 C 0
s cebCap1.NW_016107755v1     156273 28 -   1771730 TCTCAGTAATACATT-TTAAATATCCTGC
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012152574v1     510662 29 +    730504 TCTGAGTAATACATCTTAAGCAATCCTGC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            35274 29 +  18854210 TCTAAGTAACACATCATAAACCATCCTGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57791368 18 -  94987271 -----------CCTCATCAACAACCCTGC
i mm10.chr17               C 0 C 0
e aotNan1.NW_018509740v1     216665 365 -    457564 I

a score=7980283.000000
s hg38.chr6_GL000254v2_alt   821087 710 +   4827813 CACTTAATTAATTGTGTTAGAATCAAAGAAACATAGAGTTGG-GCAATAT-ACTTCATCCTACCCAT-----CCCACC-CAAATCTTACTCTACTCATCTCATTCTCATTAATTTTGGGAAATCATCAGAAGATGTGTTCGTTGAGTAAGAGATTAAAAGAAATAAGCTTTTTGACCCCTGCCAACACCCCATCCCCAGGGTGGTCACCCTCCAATACAATAAGATGCCAGGAAGAGTAAGTTGCCCTTTCTGATGCCGTAATCTGCCATCATCTTCCCATCTTCCAGTCTCTTTCCATTGCAAGTCACAATCTGGGTCTCAGGGATTATACCCGTCTTAGTCTCGATCATTGCTTTCACTTGTGCCACTGAGCTGGACCTTCGCACCTGGAGGAGGTGCCTCTTTGCCTCATCACCTGACTCCACAAGAAACAAGG---GCAGCTCCTCATCACTGGGCTTCACCACTTTCAGGGTAAGGTGGATGGTCTTCTCTTTGTCAATGCCATAAGATGAGAGGCTTCTCCGTGGCTTTAAGATCTTGGAGCCCAGCAAAAGAACCTGGTCCTGCACAGGAACCTTGGTCTTAGACCGGACATGTTCTTTGATTTTTTTCACGCTGTCATATGGGTTGGCATCAAAGGTCATTAAATCCCATTCCTCGGAACGGACATGCACCTGGGAAGTGAAAGCCACAAGACAGTTACCT-AGGATGCCTGCC
s panTro5.chr6             29783906 710 + 175400573 CACTTAATTAACTGTGTTAGAATCAAAGAAACATAGAGTTGG-GCAATAT-TCTTCATCCTACCCAT-----CCCACC-CAAATCTTACTCTACTCATCTCATTCTCATTAATTTTGGGAAATCATCAGAAGATGTGTTCGTTGAGTAAGAGATTAAAAGAAATAAGCTTATTGACCCCTGCCAACACCCCATCCCCAGGGTGGTCACCCTCCAATATAATAAGATGCCAGGAAGAGTAAGTTGCCCTTTCTGATGCCGTAATCTGCCATCATCTTCCCATCTTCCAGTCTCTTTCCATTGCAAGTCACAATCTGGGTCTCAGGGATTATACCCGTCTTAGTCTCGATCATTGCTTTCACTTGTGCCACTGAGCTGGACCTTCGCACCTGGAGGAGGTGCCTCTTTCCCTCATCAACTGACTCCACAAGAAACAAGG---GCAGCTCCTCATCACCGGGCTTCACCACTTTCAGGGTAAGGTGGATGGTCTTCTCTTTGTCAATGCCATAAGATGAGAGGCTTCTCCGTGGCTTTAAGATCTTGGAGCCCAGCGAAAGAACCTGGTCCTGCACAGGAACCTTGGTCTTAGACCGGACATGTTCTTTGATTTTTTTCACGCTGTCATCTGGGTTGGCATCAAAGGTCATTAAATCCCATTCCTCGGAACGGACATGCACCTGGGAAGTGAAAGCCACAAGACAGTTACCT-AGGATGCCTGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30018515 710 + 173848474 CACTTAATTAACTGTGTTAGAATCAAAGAAACATAGAGTTGG-GCAATAT-TCTTCATCCTACCCAT-----CCCACC-CAAATCTTACTCTACTCATCTCATTCTCATTAATTTTGGGAAATCATCAGAAGATGTGTTCGTTGAGTAAGAGATTAAAAGAAATAAGCTTATTGACCCCTGCCAACACCCCATCCCCAGGGTGGTCACCCTCCAATACAATAAGATGCCAGGAAGAGTAAGTTGCCCTTTCTGATGCCGTAATCTGCCATCATCTTCCCATCTTCCAGTCTCTTTCCATTGCAAGTCACAATCTGGGTCTCAGGGATTATACCCGTCTTAGTCTTGATCATTGCTTTCACTTGTGCCACTGAGCTGGACCTTCGCACCTGGAGGAGGTGCCTCTTTCCCTCATCAACTGACTCCACAAGAAACAAGG---GCAGCTCCTCATCACTGGGCTTCACCACTTTCAGGGTAAGGTGGATGGTCTTCTCTTTGTCAATGCCATAAGATGAGAGGCTTCTCCGTGGCTTTAAGATCTTGGAGCCCAGCGAAAGAACCTGGTCCTGCACAGGAACCTTGGTCTTAGACCGGACATGTTCTTTGATTTTTTTCACGCTGTCATCTGGGTTGGCATCAAAGGTCATTAAATCCCATTCCTCGGAATGGACATGCACCTGGGAAGTGAAAGCCACAAGACAGTTACCT-AGGATGCCTGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5821963 710 +   6154872 CACTTAATTAATTGTGTTAGAATCAAAGAAACATAGAGTTGG-GCAATAT-TCTTCATCCTACCCAT-----CCCACC-CAAATCTTACTCTACTCATCTCATTCTCATTAATTTTGGGAAATCATCAGAAGATGTGTTCGTTGAGTAAGAGATTAAAAGAAATAAGCTTTTTGACCCCTGCCAACACCCCATCCCCAGGGTGGTCAACCTCCAATACAATAAGATGCCAGGAAGAGTAAGTTGCCCTTTCTGATGCCGTAATCTGCCATTATCTTCCCATCTTCCAGTCTCTTTCCATTGCAAGTCACAATCTGGGTCTCAGGGATTATACCCGTCTTAGTCTTGATCATTGCTTTCACTTGTGCCACTGAGCTGGACCTTCGCACCTGGAGGAGGTGCCTCTTTCCCTCATCAACTGACTCCACAAGAAACAAGG---GCAGCTCCTCGTCACTGGGCTTCACCACTTTCAGGGTAAGGTGGATGGTCTTCTCTTTGTCAATGCCATAAGATGAGAGGCTTCTCCGTGGCTTTAAGATCTTGGAGCCCAGCAAAAGAACCTGGTCCTGCACAGGAACCTTGGTCTTAGACCGGACATGTTCTTTGATTTTTTTCACGCTGTCATCTGGGTTGGCATCAAAGGTCATTAAATCCCATTCCTCGGAACGGACATGCACCTGGGAAGTGAAAGCCACAAGACAGTTACCT-AGGATGCCTGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74548137 710 + 122973662 CACTTAATTAATTGTATTAGAATCAAAGAAACATAGAGTTAG-ACAATAT-TCTTCATCCTACCCAT-----CCCACC-CAAATCTTACTCTACTCATCTCATTCTCATTAATTTTGGGAAATCATCAAAGGATATGGTCGTTGAGTAAGAGATTAAAAGAAATAAGCTTTTTGACCCCTGCCAACACCCCATCCCCAGGGTGGTCACCCTCCAATGCAATAAGATGTCAGGAAGAGTAAGTTGCCCTTTCTGATGCCGTGATCTGCCATCATCTTCCCATCTTCCAGTCTCTTTCCATTGCAAGTCACAATCTGGGTCTTAGAGGTTACAAACGTCTTAGTCTCAATCATTGCTTTCACTTGTGCCACTGAGCTGGACCTTCGCACGTGGAGGAGGTGCCTCTGTCCCTCATCACGTGACTCCACAAGAAACAAGG---GCAGCTCCTCATCACTGGGCTTCACCACTTTCAGGGTAAGGTGGATGGTCTTCTCTTTGTCAATGCCGTAAGAGGAGAGTCTTCTCCGTGGCTTTAGCATCTTGGAGCCCAGCAAAAGAACCTGGTCCTGCACAGGAACCTTGGTCTTAGACCGGACACGTTCTTTGATTTTTTTCACGCTGTCATCTGGGTTGGCATCAAAGGTCATTAAATCCCCTTCCTCAGAACACACATTCACCTGGGAAGTGAAAGCCACAAGACAGTTACCT-AGGATGCCTGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30013506 677 + 172585720 CACTTAATTAATTGTGTTAGAATCAAAGAAAC--AGAGTTGG-ACAATAT-TCTTCATCCTACCCAT-----CCCACC-CAAATCTTACTCTACTCATTTCATTCTCA-------------------------------CGTTGATTAAGAGATTAAAAGAAATAAGCTTTTTGGCCCTTGCCAACACCCCATCCCCAGGGTGGTCACCCTGCAATACAATAAGATGTCAGGAAGAGTAAGTTGCCCTTTCTGATTCCATAATCTGCCATCATCTTCCCATCTTCCAGTCTCTTTCCATTGCAATTCACAATCTGGGTCTCAGGGGTTACACCCGTCTTGGTCTCGATCATTGCTTTCACTTGTGCCACTGAGCTGGACCTTCGCACCTGGAGGAGGTGCCTCTGCCCCTCATCACCTGACTCCACAAGATACAAGG---GCAGCTCCTCATCACTGGGCTTCACCACTTTCAGGGTAAGGTGGATGGTCTTCTCCTTGTCAATGCCATAAGATGAGAGCCTTCTCCGTGGCTTTAGGATCTTGGAGCCCAGCAAAAGAACCTGGTCCTGCACAGGAACCTTGGTCTTAGACCGGACGTGTTCATTGATTTTTTTCACGCTGTCCTCTGGGTTGGCATCAAAGGTCATTAAATCCCATTCCTCAGAAAGAACATGCACCTGGGAAGTGAAAGCCACAAGACAGTTGCCT-AGGATGCCTGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29677404 677 - 170955103 CACTTAATTAATTGTGTTAGAATCAAAGAAAC--AGAGTTGG-ACAATAT-TCTTCATCCTACCCAT-----CCCACC-CAAATCTTACTCTACTCATCTCATTCTCA-------------------------------CGTTGATTAAGAGATTAAAAGAAATAAGCTTTTTGGCCCTTGCCAACACCCCATCCCCAGGGTGGTCACCCTGCAATACAATAAGATGTCAGGAAGAGTAAGTTGCCCTTTCTGATTCCATAATCTGCCATCATCTTCCCATCTTCCAGTCTCTTTCCATTGCAATTCACAATCTGGGTCTCAGGGGTTACACCCGTCTTGGTCTCGATCATTGCTTTCACTTGTGCCACTGAGCTGGACCTTCGCACCTGGAGGAGGTGCCTCTGCCCCTCATCACGTGACTCCACAAGATACAAGG---GCAGCTCCTCATCACTGGGCTTCACCACTTTCAGGGTAAGGTGGATGGTCTTCTCCTTGTCAATGCCATAAGATGAGAGCCTTCTCCGTGGCTTTAGGATCTTGGAGCCCAGCAAAAGAACCTGGTCCTGCACAGGAACCTTGGTCTTAGACCGGACGTGTTCATTGATTTTTTTCACGCTGTCCTCTGGGTTGGCATCAAAGGTCATTAAATCCCATTCCTCAGAAAGAACATGCACCTGGGAAGTGAAAGCCACAAGACAGTTGCCT-AGGATGCCTGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2723568 677 -   2996164 CACTTAATTAATTGTGTTAGAATCAAAGAAAC--AGAGTTGG-ACAATAT-TCTTCATCCTACCCAT-----CCCACC-CAAATCTTACTCTACTCATCTCATTCTCA-------------------------------CGTTGATTAAGAGATTAAAAGAAATAAGCTTTTTGGCCCTTGCCAACACCCCATCCCCAGGGTGGTCACCCTGCAATACAATAAGATGTCAGGAAGAGTAAGTTGCCCTTTCTGATTCCATAATCTGCCATCATCTTCCCATCTTCCAGTCTCTTTCCATTGCAATTCACAATCTGGGTCTCAGGGGTTACACCCGTCTTGGTCTCGATCATTGCTTTCACTTGTGCCACTGAGCTGGACCTTCGCACCTGGAGGAGGTGCCTCTGCCCCTCATCACCTGACTCCACAAGATACAAGG---GCAGCTCCTCATCACTGGGCTTCACCACTTTCAGGGTAAGGTGGATGGTCTTCTCCTTGTCAATGCCATAAGATGAGAGCCTTCTCCGTGGCTTTAGGATCTTGGAGCCCAGCAAAAGAACCTGGTCCTGCGCAGGAACCTTGGTCTTAGACCGGACGTGTTCATTGATTTTTTTCACGCTGTCCTCTGGGTTGGCATCAAAGGTCATTAAATCCCATTCCTCAGAAAGAACATGCACCTGGGAAGTGAAAGCCACAAGACAGTTGCCT-AGGATGCCTGCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     473355 677 +    766320 CACTGAATTAATTGTGTTAGAATCAAAGAAAC--AGAGTTGG-ACAATAT-TCTTCATCCTACCCAT-----CCCACC-CAAATCTTACTCTACTCATCTCATTCTCA-------------------------------CGTTGATTAAGAGATTAAAAGAAATAAGCTTTTTGGCCCTTGCCAACACCCCATCCCCAGGGTGGTCACCCTGCAATACAATAAGATGTCAGGAAGAGTAAGTTGCCCTTTCTGATTCCATAATCTGCCATCATCTTCCCATCTTCCAGTCTCTTTCCATTGCAATTCACAATCTGGGTCTCAGGGGTTACACCCGTCTTGGTCTCGATCATTGCTTTCACTTGTGCCACTGAGCTGGACCTTCGCACCTGGAGGAGGTGCCTCTGCCCCTCATCACCTGACTCCACAAGATACAAGG---GCAGCTCCTCATCACTGGGCTTCACCACTTTCAGGGTAAGGTGGATGGTCTTCTCCTTGTCAATGCCATAAGATGAGAGCCTTCTCCGTGGCTTTAGGATCTTGGAGCCCAGCAAAAGAACCTGGTCCTGCACAGGAACCTTGGTCTTAGACCGGACGTGTTCATTGATTTTTTTCACGCTGTCCTCTGGGTTGGCATCAAAGGTCATTGAATTCCATTCCTCAGAAAGAACGTGCACCTGGAAAGTGAAAGCCACAAGACAGTTGCCT-AGGATGCCTGCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28931042 708 -  71996105 CACTTAATTAATTGTGTTAGAATCAAAGAAAC--AGAGTTGG-ACAATAT-TCTTCATCCTACCCAT-----CCCAAG-CAAATCTTACTCTACTCATCTCATTCTCATTAATTTTGGGAAATCATCAAAGGATGTGGTCGTTGATTAAGAGATTAGAAGAAATAAGCTTTTTGGCCCTTGCCAACACCCCATCCCCAGGGTGGTCACCCTGCAATACAATAAGATGTCAGGAAGAGTAAGTTGCCCTTTCTGATTCCATAATCTGCCATCATCTTCCCATCTTCCAGTCTCTTTCCATTGCAATTCACAATCTGGGTCTCAGGGGTTACACCCGTCTTGGTCTCGATCATTGCTTTCACTTGTGCCACTGAGCTGGACCTTCGCACCTGGAGGAGGTGCCTCTGCCCCTCATCACCTGACTCCACAAGATACAAGG---GCAGCTCCTCATCACTAGGCTTCACCACTTTCAGGGTAAGGTGGATGGTCTTCTCCTTGTCAATGCCATAAGATGAGAGCCTTCTCCGTGGCTTTAGGATCTTGGAGCCCAGCAAAAGAACCTGGTCCTGCACAGGAACCTTGGTCTTAGACCGGACGTGTTCATTGATTTTTTTCACGCTGTCCTCTGGGTTGGCATCAAAGGTCATTAAATCCCATTCCTCGGAGCAAACATGCACCTGGGAAGTGAAAGCCACAAGACAGTTGCCT-AGGATGCCTGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     107287 678 +    290775 CACTTAATTAATTGTGTTAGAATCAAAGAAAC--AGAGTTGGCAAAATTT-TCTTCATCCTACCCAT-----CCCACC-CAAATCTTACTCTACTCATCTCATTCTCA-------------------------------CGTTGATTAAGAGATTAAAAGAAATAAGCTTTTTGGCCCTTGCCAACACCCCATCCCCAGGGTGGTCACCCTGCAATACAATAAGATGTCAGGAAGAGTAAGTTGCCCTTTCTGATTCCATAATCTGCCATCATCTTCCCATCTTCCAGTCTCTTTCCATTGCAATTCACAATCTGGGTCTCAGGGGTTACACCCGTCTTGGTCTCGATCATTGCTTTCACTTGTGCCACTGAGCTGGACCTTCGCACCTGGAGGAGGTGCCTCTGCCCCTCATCACCTGACTCCACAAGATACAAGG---GCAGCTCCTCATCACTGGGCTTCACCACTTTCAGGGTAAGGTGGATGGTCTTCTCCTTGTCAATGCCATAAGATGAGAGCCTTCTCCGTGGCTTTAGGATCTTGGAGCCCAGCAAAAGAACCTGGTCTTGCACAGGAACCTTGGTCTTAGACCGGACGTGTTCATTGATTTTTTTCACGCTGTCCTCTGGGTTGGCATCAAAGGTCATTAAATCCCATTCCTCAGAAAGAACATGCACCTGGAAAGTGAAAGCCACAAGACAGTTGCCT-AGGATGCCTGCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2555153 707 -   3067355 CACTTAATTAATTGTGTTAGAATCAAAGAAACATAGAGCTGG-ACAATAT-TCTTCATCCTACCCAT-----CCCACC-CAAATCTTACTCTACTCATCTCGTTCTCATTCATTTTGGGAAATCATCAAAGGATGTGGTTGTTGATTAAGAGATTAAAAGAAATAAGCTTTTTGGCCCTTGCCAACACCCCATCCCCAGGGTGGTCACCCTGCAATACAATAAGATGTCAGG------AAGTTGCCCTTTCTGATTCCATAATCTGCCATCATCTTCCCATCTTCCAGTCTCTTTCCATTGCAATTCACAATCTGGGTCTCAGGGGTTATACCCGTCTTGGTCTCGATCATTGCTTTCACTTGTGCCACTGAGCTGGACCTTCGCACCTGGAGGAGGTGCCTCTGCCCCTCATCACCTGACTCCACAAGATACAAGGGCAGCAGCTCCTCATCACTGGACTTCACCACTTTCAGGGTAAGGTGGATGGTCTCCTTCTTGTCAATGCCATAAGATGAGAGCCTTCTCCGTGGCTTTAGGATCTTGGAGCCCAGCAAAAGAACCTGGTCCTGCACAGGAACCTTGGTCTTAGACCGGACGTGTTCATTGATTTTTTTCACGCTGTCATATGGGTTGGCATCAAAGGTCATTAAATCCCATTCCTTGGAACGAACATGCACCTGGGAAGTGAAAGCCACACGACAGTTGCCT-AGGATGCCTGCC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           154166 708 -    242197 CACTT-ATTAATTGTGTTAGAATCAAAGAAACATAGAGTTGG-ACAATAT-TCTTCATCCTACCCAT-----CCCATC-CAAATCTTACCCTACTCCTCTCATTCTCATTAATTTTAGGATATCATCAAAGGATGTGGTCATTGAGTAAGAGATTAAAAGAAATAGGCTTTTTGACCCCCGCCAACACCCAGTCCCCAGGGTGGTCACCCTCCAATGGAATAATGTGTCAGGGAGAGTAAATTGCCCTTTCTGATTTCGTAATCTGCCATCTTC-TCCCATATTCCAGTTTCTTTCCATTGCAAGTCACAATCTGGGTCTCAGGGGTTACACCTGTCTTGGTCTTGATCATTGCTTTCACCTGTGCCACTGAGCTTGTTCTTCGCACCTGGAGGAGGTGTGGCTGCCCCTCATCACCTGACTCCATGAGAGTCAAGG---GCACCTCCTCATCACTGGCCTTCACCACTTTCAGAGTGAGGTGGATGGTCTTCTCCTTGTCAATGCCATAAGATGAGAGTCTTCTCTGTGGCTTTAGGACCTTGGACCCCATCAGAAGAACCTGGCCCTGGACAGGAATCTTGGTCTTAGAACAGACATGTTCACTGATTTTCTTCATGCTGTCATCTGGGTTGACATCAAAAGTCATTAAATCCCATTCCTTGGAAAGGACATGTACCTGGGAAGTGAAAGCCACAAGGCAGTTGCCT-AGGATGCCTGCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     156301 703 -   1771730 CACTTAATTAATTGTATTAGAATCAAAGAAACATAGAGTTGG-ACAATAT-TCTTCATCCCACCCAT-----CCCACC-CAAATCTTACCCTGCTCCTCTCATTCTCATTAATTTTGGGAAATCATCAAAGGATGTGGTCATTGAGTAAGAGATTAAAAGAAATAGGCTTTTTGGCCCCCAACAACACCCAGTCCCCAGGGTGGTCACCCTCCAATGGAATAATATGTCAGGAAGAGTAAATTGCCCTTTCTGATTCCATAATCTTCCATCTTC-TCCCATCTTCCAGTTTCTTTCCATTGCAAGTCACAATCTGGGTCTCAGGGGTTACACCTGTCTTGGTCTCGATCATTGCTTTCACCTATGCCACTGAGCTTGTTCTTCACACCT------GGTGCTGCTGCCCCTCATCACCTGACTCCATGAGAGTCAAGG---GCACCTCCTCATCACTGGACTTCACCACTTTCAGAGTGAAGTGGATGGTCTTCTCCTTGTCAATGCCATAAGATGAGAGTCTTCTCTGTGGCTTTAGGACCTTGGACCCCATCAGAAGAACCTGGTCCTGCACAGGAACCTTGGTCTTAGAACAGACATGTTCACTGATTTTCTTCATGCTGTCATCTGGGTTGGCATCAAAGGTCATTAAATCCCATTCCTTGGAAAGGACATGCACCTGGGAAGTGAAAGCCACAAGACAGTTGCCT-AGGATGCCTGCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     217030 709 -    457564 CACTTAATTAATTGTGTTAGAATCAAAGAAACATAGAGTTGG-ACAATAT-TCTTGATCCTACCCAT-----CCCACC-CAAATCTTACCCTACTCCTCTCATTCTCATTAATTTTGGGAAATCATCAAAGGATGTGGTCATTGAGTAAGAGATTAAAAGAAATAGGCTTTTTGGCCCCTGACAACACCCAGTCCCTAGGGTGGTCACCCTCCAATGCAATAATATGTCAGGAAGAGTAAATTGTCCTTTCTGATTCTGTAATCTGCCATCTTC-TCCCATCTTCCAGTTTCTTTCCATTGCAAGTCACAATCTGGGTCTCAGAGGTTACACCCGTCTTGGTCTCGATCATTGCTTTCACATGTGCCACTGAGCTTGTTCTTCGCATCCGGAGGAGGTGCCACTGCCCCTCATCACCTGACTCCACGAGAGTCAAGG---GCACCTCCTCATCACTGGGCTTCACCACTTTCAGAGTGAGATGAATGGTCGTCTCCTTGTCAATGCCATAAGATGAGAGTCTTCTCTGTGGCTTTAGGACCTCAGACACCATCAGAAGAACCTGGTCCTGCACAGGAACCTTGGTCTTAGAACAGACATGTTCACTGATTTTCTTCATGCTGTCATCTGGGTTGGCATCAAAGGTCATTAAATCCCACTCCTTGGAAAGGACAGGCACCTGGGAAGTGAAAGCCACAAGACAGTTGCCT-AGGATGCCTGCC
i aotNan1.NW_018509740v1   I 365 C 0
s proCoq1.NW_012152574v1     510691 707 +    730504 CACTTAATCAATTATATTAGAATCAAAGAATT--AGAGTTGA-A-AATAT-TTTTCATCCTACCCAC-----CCCACCCCAAATCTTACTCTATTTATCTCATTCTCATTAATTTTGGGAAATCATCAAAGGATATGATTGGTAAATAATAGATTAAAGGAAATAAGCCCTTTTGTAGCTGACAGCATCCCCTCTCCAGGGCAGTCACCCCCCAATACAATGGTATGTCAGAAACAGTATATTGCCCTTTCTGATGTTATAATCTGCCATGATCTTCCCATCTTCCAATCTCTTCCCATTGCAAGTCACAATCTGGGTCTCTGGGGTTATAGCAGTCTTAGTTTCGATCATCTCTTTCACGTGGGCCACTGAGCTGGACCTTCGCATCTGGAGGAGGTGCCTCTGTCCCTCATCTCCGGACTCCACGAGAAACAAGG---GCACCTCCTCATCCCCGGGCTTCACCACTTTCAGGGTGAGGTGGATGGTCTTCTCCTTGTCAATGCCATAAGACGACAGCCTTCTCTGTGGCTTTAGGATCTTGGATCCCAGCAGAAGGACCTGGTCCTGCACAGGAACCTTGGTCTTAGACCGAACGTGTTCATTGATCTTCTTCACTCTGTCATCCAGGTTGGCATCAAAGGTCATTAATTCCCATTCCGTGGAATAGACAGTCACCTGGGCAATGAGAG-CAAGAGACAGTTGCCT-AGGATGCCTGCC
i proCoq1.NW_012152574v1   C 0 I 164
s otoGar3.GL873550            35303 709 +  18854210 CACTTAATCAATTGTATTAGAATCAAAGAATT--TGCATTAG-A-ATAATATTTTCATTCTACCCACACTATCCCACCTCAAATCTTACTCTATCTGT----TTCTCATTACTTTGGAGAAATCATC-AGGGATGTGATTGGTTAACAATAGAATAAAGAGAAGAAACTCTTTTGCTGCTGATAGCATCCCATCTTCAGGATGGTCACCCTGACATACAATGGAATGTCAGGAAGAGTAAATCACCCCTTCTGATACCATAATCGGCCATGATCTTCCCAGTTTCCAGTCTCTTCCCATTGCAAGTCACAATCTGGGTCTCTGGGGGTTGAGCAGTCTTAGTCTCGATCATCTCTTTCACCTGGGCCACTGAGCTGGACCTTCGCACCTGGAGGAGGTGCCTCTGCCCCGCATCTCCTGGCTCCACAAGAAACAAGG---GCATCTCCTCATCACTGGGCTTCACCACTTTCAGGGTGAGGTGGATGGTCTTCTCCTTGTCAATGCCATAAGAGGATAGACTTCTCTGTGGCTTCAGGGTCTTGGATCCCAGCAGAAGGACCTGGTCCCACACAGGAACCTTGGTCTTAGATCGGATGTGTTCATTAATCTTCCTCACTCTGTCATTCTGGTTGGCATTGAAGGTCATTAATTCCCATTCCTCGGAATAGACATTCACCTGGAGGATGAAAGTCAAGAGGCAGTTGCCT-GGAATGCCTGCC
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57791386 682 -  94987271 ----GAATGAACTATGTTAGAAAC-AAGATTCACAGACTTGA-CAAATAC-TTTTAATCTACTCCAC-----TTCCCT-CAAA--------TATTTATTTCATTCTCGTTAATTTT-TTATATCATCAAGAGATGTGATTG----GTAATAGCTCAGAGGAAATCGGCTTTGAG---CTTCTCATCACCGCATCCCC---GTGGTCATCCCCCAGTGCAGTGTGTTGTCAGAAAGAGCAAACTGCCACTCTTGATGTTGTAGTCAGCCATGATCTTTCCATCTTCCAGCTTCTTTCCGTTGCAATTCACAACCTGCTTCTTAGGGATCACAGAGGTCACACTCTCGATCATCTCTTTCACCTGGGCCACTGAGCTGGATCTTCGAACTCGGAGGAGGTGCCTTTGCCCCTCGTTTTTGGACTCCACCAGAAACAAGG---GCAGCTCTTCATCACTGGGCTTCACCACCTTCAGGGTAAGGTGGATAGTGGTTTCCTTGTCAATCCCATAGGATGACAATTTTCGATGGGGCTTGAGGATTTTGGAGTCTAGCAGAAGGATCTGGTCCTGTACAGAGACCTTGGTTTGGGACCTAATATGTTCATTTATCTTCTTCACTTTGTCATTCTCAGTGGTCTCAAAGGTCATTAACCGCCATTGGTCTGAACGGACA---ACCTAGGCAAAGAAAGCCA--AGAGCGTCATCTAAGAACGCCTGCC
i mm10.chr17               C 0 C 0

a score=1399596.000000
s hg38.chr6_GL000254v2_alt   821797 142 +   4827813 TC-CTTTACACT-TCTACTCCCCACCACAATGGCTCCCCCTCTTCCACTATCTATCTGGTCCTCTAGCTCCTATTCAGTAGCCAGTGTCCCTCTCtttcttggaacttcttttttggaattaccaagttacaacacaaataaga
s panTro5.chr6             29784616 142 + 175400573 TC-CCTTACACT-TCTACTCCCCACCACAATGGCTCCCCCTCTTCCACTATCTATCTGGTCCTCTAGCTCCTATTCAGTAGCCAGTGTCCCTCTCtttcttggaacttcttttttggaattaccaagttacaacacaaataaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30019225 142 + 173848474 TC-CCTTACACT-TCTACTCCCCACCACAATGGCTCCCCCTCTTCCACTATCTATCTGGTCCTCTAGCTCCTATTCAGTAGCCAGTGTCCCTCTCtttcttggaacttcttttttggaattaccaagttacaacacaaataaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5822673 142 +   6154872 TC-CCTTACACT-TCTACTCCCCACCACAATGGCTCCCCCTCTTCCACTATCTATCTGGTCCTCTAGCTCCTATTCAGTAGACAGTGTCCCTCTCtttcttggaacttcttttttggaattaccaagttacaacacaaataaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74548847 142 + 122973662 TC-CCTTACACT-TCTATTCCCCATCACAATGGCTCCCCCCCTTCCACTATCTATCTGGTCCTCCAGCTCCTGTTCAGTAGCCAGTGTCCCTCTCtttcttggaacttcttttttggaattaccaagttacaacacaaataaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30014183 143 + 172585720 TCACTTTACATT-TCTGCTCCCCACCACAATGGCTCCCACCCTTCCGCTATCTATCTGGTCTCCTAGCTCCTGTTCAGTAGCCAGTGTCCCTCTCtttcttggaacttctcctttggaatgaccaagttgcaacacaaataaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29678081 143 - 170955103 TCACTTTACATT-TCTGCTCCCCACCACAATGGCTCCCACCCTTCCGCTATCTATCTGGTCTCCTAGCTCCTGTTCAGTAGCCAGTGTCCCTCTCtttcttggaacttctcctttggaattaccaagttgcaacacaaataaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2724245 143 -   2996164 TCACTTTACATT-TCTGCTCCCCACCACAATGGCTCCCACCCTTCCGCTATCTATCTGGTCTCCTAGCTCCTGTTCAGTAGCCAGTGTCCCTCTCtttcttggaacttctcctttggaattaccaagttgcaacacaaataaga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     474032 143 +    766320 TCACTTTACATT-TCTGCTCCCCATCACAATGGCTCCCACCCTTCTGCTATCTATCTGGTCTCCTAGCTCCTGTTCAGTAGCCAGTGTCCCTCTCtttcttggaacttctcctttggaattaccaagttgcaacacaaataaga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28931750 143 -  71996105 TCACTTTACATT-TCTGCTCCCCACCACAATGGCTCCCACCCTTCCGCTATCTATCTGGTCTCCTAGCTCCTGTTCAGTAGCCAGTGTCCCTCTCtttcttggaacgtctcctttggaattaccaagttgcaacacaaataaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     107965 143 +    290775 TCACTTTACATT-TCTGCTCCCCACCACAATGGCTCCCACCCTTCTGCTATCTATCTGGTCTCCTAGCTCCTGTTCAGTAGCCAGTGTCCCTCTCtttcttggaacttctcctttggaattaccaagttgcaacacaaataaga
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2555860 143 -   3067355 TCACTTTACATT-TCTGCTCCCCATCACAATGGCTCCCACCCTTCCACTGTCTATCTGGTCCTCTAGCTCCTGTTCAGTAGCCAGTGTCCCTCTCTttcttggaacttctcctttggaattaccaagttgcaacacaaataaga
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           154874 143 -    242197 TCCCTTTACACT-CCTGTCCCCCACCACAGTGGCTCCTACCCTTCCACTGTTTATCTGGTCCTCTAGCTCCTGTCCAGTAACAAGTGTCCCTCTGtttcttgggacttctcttttggaattaccaagttacaacacaaataaga
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     157004 143 -   1771730 TCCCTTTACACT-CCTGCCCCCCACCACAGTGGCTCCCACCCTTCCACTGTCTATCTGGTCCTCTAGCTCCTGTCCAGTAACTAGTGCCCCTCTCtttcttgggacttctcttttggaattaccaagtcacaacacaaataaga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     217739 143 -    457564 TCCCTTTATACT-TCTGCTCCCCACCACAGTGGCTCCCACCCTTCCACTGTCTATCTGGTCCTCTAGCTCCTGTCCAATAACCAGTGCCCCTCTCTTTCTTGGGACTTCTCTTTTGGAATTACCAAGTTACAACACAAATAAGA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            36013 141 +  18854210 -CCCTATACACTGCCTGGTCCCCACCAGAATTTTTCCCACCCTTCTACCGCCTATCTGGTCTTCTAGTTCCTTTCCAATAGTC--TGTCCCTCCCTTTCTTGGAACTTCTCATCTGGAATTCCCATATCATAATACAAACAAGA
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57792068 122 -  94987271 ACCCTCTAC-CC-CCTACTCCTCAGCTTCACTGTTCTC-------------CTGGTTGGCCCTCTGGCTCCTTCTCAACAGTCTGCATCTCTCCCTCTCTTGCAACTTTT-------GATTCCTACATCATAACCCAAATCAGA
i mm10.chr17               C 0 I 15
e proCoq1.NW_012152574v1     511398 164 +    730504 I

a score=72993.000000
s hg38.chr6_GL000254v2_alt   821939 8 +   4827813 taatttgt
s panTro5.chr6             29784758 8 + 175400573 taatttgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30019367 8 + 173848474 taatttgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5822815 8 +   6154872 taatttgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74548989 8 + 122973662 aaatttgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30014326 8 + 172585720 aaatttgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29678224 8 - 170955103 aaatttgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2724388 8 -   2996164 aaatttgt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     474175 8 +    766320 aaatttgt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28931893 8 -  71996105 aaatttgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     108108 8 +    290775 aaatttgt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2556003 8 -   3067355 aaatttgt
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           155017 8 -    242197 aaatttgt
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     157147 8 -   1771730 aaatttgt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     217882 8 -    457564 AAATTTGT
i aotNan1.NW_018509740v1   C 0 I 3760
s otoGar3.GL873550            36154 8 +  18854210 AAATTAAT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57792190 15 -  94987271 I
e proCoq1.NW_012152574v1     511398 164 +    730504 I

a score=893018.000000
s hg38.chr6_GL000254v2_alt   821947 120 +   4827813 cccattcctttataatcacacc-tt----tttttcgatcTTGAGAATGGaaaataaaatcctgagcccccaaccaactgaacggacgctct-------------tttgc------tcagggggaccctagagaaactttaaaaa
s panTro5.chr6             29784766 120 + 175400573 cccattcctttataatcacacc-tt----tttttcgatcTTGAGAATGGaaaataaaatcctgagcccccaaccaactgaacggacgctct-------------tttgc------tcagggggaccctagagaaactttaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30019375 120 + 173848474 cccattcctttataatcacacc-tt----tttttcgatcTTGAGAATGGaaaataaaatcctgagcccccaaccaactgaacggacgctct-------------tttgc------tcagggggaccctagagaaactttaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5822823 120 +   6154872 cccattcctttataatcacacc-tt----tttttcgatcTTGAGAATGGaaaataaaatcctgagcccccaaccaactgaacggacgctct-------------tttgc------tcagggggaccctagagaaactttaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74548997 121 + 122973662 cccattcctttataatcacaccttt----tttttCGATCTTGAGAATGGaaaataaaatcctgagcccccaaccaactgaacggacgctct-------------tttgc------tcaggggaaccctagagaaactttaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30014334 120 + 172585720 cccattcctttataatcacacc-tt----tttttcaatcTTGAGAATGaaaaataaaatcctgagcccccaaccaattgaacggaccctct-------------cttgc------tcagggggaccctagagaaattttaagaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29678232 120 - 170955103 cccattcctttataatcacacc-tt----tttttcaatcTTGAGAATGaaaaataaaatcctgagcccccaaccaattgaacggaccctct-------------cttgc------tcagagggaccctagagaaattttaagaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2724396 120 -   2996164 cccattcctttataatcacacc-tt----tttttcaatcTTGAGAATGaaaaataaaatcctgagcccccaaccaattgaacggaccctct-------------cttgc------tcagggggaccctagagaaattttaagaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     474183 120 +    766320 cccattcctttataatcacacc-tt----tttttcaatcTTGAGAATGaaaaataaaatcctgagcccccaaccaattgaacggaccttct-------------cttgc------tcagggggaccctagagaaattttaagaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28931901 120 -  71996105 cccattcctttataatcacacc-tt----tttttcaatcTTGAGAATGaaaaataaaatcctgagcccccaaccaattgaacggaccctct-------------cttgc------tcagggggaccctagagaaattttaagaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     108116 120 +    290775 cccattcctttataatcacacc-tt----tttttcaatcTTGAGAATGaaaaataaaatcctgagcccccaaccaattgaacggaccttct-------------cttgc------tcagggggaccctagagaaattttaagaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2556011 121 -   3067355 cccattcctttgtaatcacaCCTTT----TTTTTCAATCTTGAGAATGaaaaataaaatcctgagcccccaaccaattgaacagaccctct-------------cttgc------tcagggggaccctagagaaattttaagaa
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           155025 124 -    242197 cccattcctttaaaaacacatt-ttaAAAAAAAAAAATCTCgagaatgaaaaataaaatcctgagtccccaaccaactgaagggacctgct-------------cttct------tctgggggaccctagagaaactttgaaaa
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     157155 120 -   1771730 cccattcctgtataaacacctt-tc----ttttaaAATCTTGAGAATGaaaaataaaatcctgagcccccaaccaactgaagggaccctct-------------cttcc------tctggggaaccctagagaaactttgaaaa
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550            36162 128 +  18854210 CCCATTCCTTTT--ATCACAAC-TT----TTATCCA--TTTCAAAATGTAATTTA------TGCTTTCCTACCTTACTTATCTGCCTCTCTGATCTAGAAAAAGTTTGTTAAATGTCAAGAAGAAAATACA-AAGCTTCAAAAG
i otoGar3.GL873550         C 0 I 41
e mm10.chr17               57792190  15 -  94987271 I
e proCoq1.NW_012152574v1     511398 164 +    730504 I
e aotNan1.NW_018509740v1     217890 3760 -    457564 I

a score=176670.000000
s hg38.chr6_GL000254v2_alt   822067 24 +   4827813 cttagtcattgggccaagggtggt
s panTro5.chr6             29784886 24 + 175400573 cttagtcattgggccaagggtggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30019495 24 + 173848474 cttagtcattgggccaagggtggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5822943 24 +   6154872 cttagtcattgggccaagggtggt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74549118 24 + 122973662 cttagtcattgggccaagggtggt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30014454 24 + 172585720 cttagtcattgggccaagggcagt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29678352 24 - 170955103 cttagtcattgggccaagggcagt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2724516 24 -   2996164 cttagtcattgggccaagggcagt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     474303 24 +    766320 cttagtcattgggccaagggcagt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28932021 24 -  71996105 cttaatcattgggccaagggcagt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     108236 24 +    290775 cttagtcattgggccaagggcagt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2556132 24 -   3067355 cttagtcattgggccaagggcagt
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           155149 24 -    242197 tttagtCATTGTgctgggtgtggt
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     157275 24 -   1771730 cttagtcattgggctgggtgtggt
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               57792190 15 -  94987271 I
e proCoq1.NW_012152574v1     511398 164 +    730504 I
e otoGar3.GL873550            36290 41 +  18854210 I
e aotNan1.NW_018509740v1     217890 3760 -    457564 I

a score=2196426.000000
s hg38.chr6_GL000254v2_alt   822091 290 +   4827813 ggcttacacctgtaatcccagaactttgggaagctgaggcaggctgatcaattgatgctgg-gagttcgagaccagcctggtgaacttggtgaaactctgtctctact--aaaaatacaaaaattagccaggcgtggtggcaagtccctgtaatcccagctactcaggaggctgaggcaggagaatcatttgaatccagg-------------------aggcagaggttgcagtgagtggagatggcactactgcactccagccagggcaacagagtgagactctgtctcaaaa-atataaa--taaataaaac
s panTro5.chr6             29784910 309 + 175400573 ggcttacacctgtaatcccagaactttgggaagctgaggcaggctgatcaattgaggctgg-gagttcgagaccagcctggtcaacttggtgaaactccgtctctact--aaaaatacaaaaattagccaggcgtggtggtgagtccctgtaatcccagctactcaggaggctgaggcaggagaatcatttgaatccaggaggctcatttgaatccagaaggcagaggttgcagtgagtggagatggcactactgcactccagccagggcaacagagtgagactctgtctcaaaa-atataaa--taaacaaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30019519 309 + 173848474 ggcttacacctgtaatcccagaactttgggaagctgaggcaggctgatcaattgaggctgg-gagttcgagaccagcctggtcaacttggtgaaactccgtctctact--aaaaatacaaaaattagccaggcgtggtggtgagtccctgtaatcccagctactcaggaggctgaggcaggagaatcatttgaatccaggaggctcattggaatccagaaggcagaggttgcagtgagtggagatggcactactgcactccagccagggcaacagagtgagactctgtctcaaaa-atataaa--taaacaaaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5822967 274 +   6154872 ggcttacacctgtaatcccagaactttgggaagctgaggcaggctgatcaattgaggctgg-ga----------------gtcaacttggtgaaactccgtctctact--aaaaatacaaaaattagccagacgtggtggcgagtccctgtaatcccagctactcaggaggctgaggcaggagaatcatttgaatccagg-------------------aggcagaggttgcagtgagcggagatggcactactgcactccagccagggcaacagagtgagactctgtctcaaaa-atataaa--taaacaaaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74549142 290 + 122973662 ggcttacacctgtaatcccagaactttgggaagctgaggcgggctgatcacttgaggctgg-gagttcgagaccagcctggtcaacttggtgaaactccatctctact--aaaaatgtaaaaattagccaggagtggtggcgagttcctgtaatcccagctactcaggaggctgaggcatgaaaatcatttgaatccagg-------------------aggtagaggttgcagtgagtggagatggcactactgcactccagccagggcaacagagtcagactctgtctcaaaa-atataaa--taaataaaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30014478 290 + 172585720 ggcttatacctgtaatccaagaactttgggaagctgaggcaagctgatcacttgaggctgg-gagttcgagaccagcctggccaacttggtgaaacctcatctctact--aaaaatacaaaaattaaccaggcgtggtggtgagtccctgtaatcccagctactcaggaggctgaggcatgagaatcatttgaacccaga-------------------aggcagaggttgcagtaagtggagatggcaccactgcactccagctggggcaacagagtgagactctgtctcaaaa-agataaa--taaataaaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29678376 290 - 170955103 ggcttatacctgtaatccaagaactttgggaagctgaggcaagctgatcacttgaggctgg-gagttcgagaccagcctggccaacttggtgaaacctcatctctact--aaaaatacaaaaattaaccaggcgtggtggtgagtccctgtaatcccagctactcgggaggctgaggcatgagaatcatttgaacccaga-------------------aggcagaggttgcagtaagtggagatggcaccactgcactccagctggggcaacagagtgagactctgtctcaaaa-agataaa--taaataaaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2724540 290 -   2996164 ggcttatacctgtaatccaagaactttgggaagctgaggcaagctgatcacttgaggctgg-gagttcgagaccagcctggccaacttggtgaaacctcatctctact--aaaaatacaaaaattaaccaggcgtggtggtgagtccctgtaatcccagctactcaggaggctgaggcatgagaatcatttgaacccaga-------------------aggcagaggttgcagtaagtggagatggcaccactgcactccagctggggcaacagagtgagactctgtctcaaaa-agataaa--taaataaaat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     474327 290 +    766320 ggcttatacctgtaatccaagaactttgggaagctgaggcaagctgatcacttgaggctgg-gagttcgagaccagcctggccaacttggtgaaacctcatctctact--aaaaatacaaaaattaaccaggcgtggtggtgagtccctgtaatcccagctactcaggaggctgaggcatgagaatcatttgaacccaga-------------------aggcagaggttgcagtaagtggagacggcaccactgcactccagctggggcaacagagtgagactctgtctcaaaa-agataaa--taaataaaat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28932045 290 -  71996105 ggcttatacctgtaatcccagaactttgggaagctgaggcaagctgatcacttgaggctgg-gagttcgagaccagcctggccaacttggtgaaacctcatctctact--aaaaatacaaaaattaaccaggcgtggtggtaagtccctgtcatcccagctactcaggaggctgaggcatgagaatcatttgaacctaga-------------------aggcagaggttgcagtaagtagagatggcaccactgcactccagctggggcaacagagtgagactctgtctcaaaa-agataaa--taaataaaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     108260 290 +    290775 ggcttatacctgtaatccaagaactttgggaagctgaggcaagctgatcacttgaggctgg-gagttcgagaccagcctggccaacttggtgaaacctcatctctact--aaaaatacaaaaattaaccaggcgtggtggtgagtccctgtaatcccagctactcaggaggctgaggcatgagaatcatttgaacccaga-------------------aggcagaggttgcagtaagtggagatggcaccactgcactccagctggggcaacagagtgagactctgtctcaaaa-agataaa--taaataaaat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2556156 290 -   3067355 ggcttatacctgtaatcccagaactttgggaagctgaggcaagctgatcacttgaggctgg-gagttcgagaccagcctggccaacttggtgaaacctcatctctact--aaaagtacaaaaattagccaggcgtggtgttgagtccctgtaatcccagctactcaggaggctgaggcatgagaatcatttgaacccaga-------------------aggcagaggttgcagtaagtggagatggcaccactgcactccagctggggcaacagagtgagactctgtctcaaaa-agataaa--taaataaaat
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           155173 265 -    242197 ggcttacacctgtaatcccagaactttgggaagctgaggtgggctgatcacttga-gccaa-gagtttgagaccatcctggtcaacttagtgaaactccatctctact--aaaaatacaaaaattagccaggtggggtggcgagtgcctgtaatctcagctattcaggaagctgaggcatgagaatcacttgaacct-ga-------------------aggcagaggccgcaatgaacagagat----------------------ggcAACAGAGTGAGA--CAGTCTCAAGATAAATAAA--TAAATAAGAC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     157299 265 -   1771730 ggcttacacctataatcccagaactttgggaagctgaggtgggctgatcacttga-gccaa-gagtttgagaccagcctggtcaacttggtgaaaccccatctctact--aaaaatacaaaaattagccaggtgggatggcaagtgcctgtaatctcagctattcaggaagctgaggcatgagaatcacttgaacct-ga-------------------agggagaggttgcagtgagcagagat----------------------ggcaacagagtgaga--ctgtctcaagataaataaa--taaataaaac
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550            36331 288 +  18854210 GATTTATctcggtgcccctagctcagtgagtag-ggcgccagccacatacactgaggctggtggattctagcccagcccag---gcctgctaaacaacaatgacaactgcaacaacaaaaaaaatagccaggcattgtggcagatgcctctagtcccagctactcgggagtctgaagcaagagaatcgcttaagcccaag-------------------agtttgagcttgctgtgacctg---tgacgccacagcattctaccaagggccacatagtgagactctgtctcaaaa-aaataaaataaaataaaat
i otoGar3.GL873550         I 41 C 0
e mm10.chr17               57792190  15 -  94987271 I
e proCoq1.NW_012152574v1     511398 164 +    730504 I
e aotNan1.NW_018509740v1     217890 3760 -    457564 I

a score=1498123.000000
s hg38.chr6_GL000254v2_alt   822381 215 +   4827813 a-ttcagtcatgatggaacaggaggttggatatgcctcattgtatcttctcccttttgcagtttagacacaactgac-cagcaaagttagagattataagactgagagaatggattctt---tgtggcaataaga------tagcaaattataaacaagaccgagggctataacaggca--aaagttaagtcatgcatcccttacacttaaagaataaactatgtt----ct
s panTro5.chr6             29785219 216 + 175400573 atttcagtcatgatggaacaggacgttggatatgcctcattgtatcttctcccttttgcagtttagacacaactgac-cagcaaagttagagattataagactgagagaatggattctt---tgtggcaataaga------tagcaaattataaacaagaccgagggctataacaggca--agagttaagtcatgcatcccttacacttaaagaataaactatgtt----ct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30019828 216 + 173848474 atttcagtcatgatggaacaggacgttggatatgcctcattgtatcttctcccttttgcagtttagacacaactgac-cagcaaagttagagattataagactgagagaatggattctt---tgtggcaataaga------tagcaaattataaacaagaccgagggctataacaggca--agagttaagtcatgcatcccttacacttaaagaataaactatgtt----ct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5823241 216 +   6154872 atttcagtcatgatggaacaggaggttggatatgcctcattgtatcttctcccttttgcagtttagacacaactgac-cagcaaatttagagattataagactgagagaatggattctt---tgtggcaataaga------tagcaaattataaacaagaccgagggctataacaggca--agagttaagtcatgtatcccttacgcttaaagaataaactatgtt----ct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74549432 214 + 122973662 atttcagtcatgatggaacaggaggttggacatgcctcattatatcttctcccttttgcagtttagacacaactgac----acaacttagagattataagactgagagaatggattctt---tgtggcaataaga------tagcaaattataaacaagaccgagggctataacaggcaatatagttaagtcatgcatccc-tacacttaaagaataaactatgtt----ct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30014768 225 + 172585720 acctcagtcatgatgaaacaggaggctggacatgcctcattatatcttctcccttttgcagtttagacacaactgac-tagcaacgttagagattataagactgaaagaatggattatt---ggtggcaataagatttttgtagcaaattttaaacaagacctaaggctataataggca--agagttaagtcatgcatccc-tacacttaaagaataaactatgttctaact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29678666 225 - 170955103 acctcagtcatgatgaaacaggaggctggacatgcctcattatatcttctcccttttgcagtttagacacaactgac-tagcaacgttagagattataagactgaaagaatggattatt---ggtggcaataagatttttgtagcaaattttaaacaagacctaaggctataataggca--agagttaagtcatgcatccc-tacacttaaagaataaactatgttctaact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2724830 225 -   2996164 acctcagtcatgatgaaacaggaggctggacatgcctcattatatcttctcccttttgcagtttagacacaactgac-tagcaacgttagagattataagactgaaagaatggattatt---ggtggcaataagatttttgtagcaaattttaaacaagacctaaggctataataggca--agagttaagtcatgcatccc-tacacttaaagaataaactatgttctaact
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     474617 225 +    766320 acctcagtcatgatgaaacaggaggctggacatgcctcattatatcttctcccttttgcagtttagacacaattgac-tagcaacgttagagattataagactgaaagaatggattatt---ggtggcaataagatttttgtagcaaattttaaacaagacctaaggctataataggca--agagttaagtcatgcatccc-tacacttaaaaaataaactatgttctaact
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28932335 225 -  71996105 acctcagtcatgatgaaacaggaggctggacatgcctcattatatcttctcccttttgcagtttagacacaactgac-tagcaacgttagagattataagactgaaagaatggattatt---ggtggcaataagatttttgtagcaaattttaaacaagacctaaggctataataggca--agagttaagtcatgcatccc-tacacttaaagaataaactacgttctaact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     108550 225 +    290775 acctcagtcatgatgaaacaggaggctggacatgcctcattatatcttctcccttttgcagtttagacacaattgac-tagcaacgttagagattataagactgaaagaatggattatt---ggtggcaataagatttttgtagcaaattttaaacaagacctaaggctataataggca--agagttaagtcatgcatccc-tacacttaaaaaataaactatgttctaact
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2556446 225 -   3067355 acctcagtcatgatgaaacaggaggctggacatgcctcattatatcttctcccttttgcagtttagacacaactgac-cagcaacgttagagattataagactgaaagaatggattatt---ggtggcaataagatttttgtggcaaattttaaacaagacctaaggctataataggca--agagttaagtcatgcatccc-tacacttaaagaataaaccatgttctaact
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           155438 207 -    242197 Atctcagtcacgatggaacag---gttggacacgactcattatatcttttcccttctgtagtttagacacaactgacccagcaacattaaagattataag---------atggatttttttgtgtgtcaataaaa------tagcaaattataaacaagacctaagactataccaagca--agagttaagtcatgcatccc-tacatttaaagaataaactatggc----ct
i saiBol1.JH378357         C 0 I 160
s cebCap1.NW_016107755v1     157564 205 -   1771730 atctcagtcatgatggaacag---gttggacactactcattatatcttctaccttttgtagtttagacacaactgacccagcaacattaaagattataag---------atggatttttt--tgtgtcactaaaa------tagcaaattataaacaagacctaagactataacaagca--agagttaagtcatgcatccc-tacatttaaagaataaactacgtt----ct
i cebCap1.NW_016107755v1   C 0 I 4
e mm10.chr17               57792190  15 -  94987271 I
e proCoq1.NW_012152574v1     511398 164 +    730504 I
e otoGar3.GL873550            36619   0 +  18854210 C
e aotNan1.NW_018509740v1     217890 3760 -    457564 I

a score=4547277.000000
s hg38.chr6_GL000254v2_alt   822596 622 +   4827813 gccacaaagt-tttttcttttttctctagcagctaaacaagcactggccttgacaggaacaatattaaaacaattacagctcaccctgtgttggggaacacaggctaactgaccccgtgttccacaagccataactacagttttaattggacaaaagactgatttcagtaattttctcctgataagagaccactgaccatggactggttctggctagtttacagaagctgtgcatttgaatgcctttgtgtccctgcttcaccttttcatgtataaggcctaactgtaatgcaattaaatgttaagtctccacttcagagtgaccatgggtggtatgtaacatgcaagcttattcaatatgcatgcattaggaccccctccatgaatattcattgcctctgct------------------------------------ataacctattggatatgtatacttagcaaaccccttcagcataaattcctgtgtcac---ctttcctcctgcaaagtgcttgc-----ttttggttttcaatcagaagcaaaacttcccagcctgtcagaatggctaccttgcagactataacctttcataagaaataaactcccctt-ctaaatttatgaattgtgtga-ttttttttagttgacaATCTTTACATTTC
s panTro5.chr6             29785435 622 + 175400573 gccacaaagt-tttttcttttttctctagcagctaaacaagcactggccttgacaggaacaatattaaaacaattacagctcaccctgtgttggggaacacgggctaactgaccccgtgttccacaagccataactacagttttaactcgacaaaagactgatttcagtaattttctcctgataagagaccactgaccatggactggttctggctagtttacagaagctgcgcatttgaatgcctttgtgtccctgcttcaccttttcatgtataaagcctaactgtaatgcaattaaatgttaagtctccacttcagagtgaccatgggtggtatgtaacatgcaagcttattcaatatgcatgcattaggacccccttcatgaatattcattgcctctgct------------------------------------ataacctattggatatgtatacttagcaaaccccttcagcataaattcctgtgtcac---ctttcctcctgcaaagtgcttgc-----ttctggttttcaatcagaagcaaaacttcccagcctgtcagaatggctaccttgcagactataacctttcataagaaataaactcccctt-ctaaatttatgaattgtgtga-ttttttgtagttgacaATCTTTACATTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30020044 658 + 173848474 gccacaaagt-tttttcttttttctctagcagctaaacaagcactggccttgacaggaacaatattaaaacaattacagctcaccctgtgttggggaacacgggctaactgaccccgtgttccacaagccataactacagttttaactcgacaaaagactgatttcagtaattttctcctgataagagaccactgaccatggactggttctggctagtttacagaagctgcgcatttgaatgcctttgtgtccctgcttcaccttttcatgtataaagcctaactgtaatgcaattaaatgttaagtctccacttcagagtgaccatgggtggtatgtaacatgcaagcttattcaatatgcatgcattaggacccccttcatgaatattcattgcctctgctattggatacatacctattggttatgtacatacatacataacctattggatatgtatacttagcaaaccccttcagcataaattcctgtgtcac---ctttcctcctgcaaagtgcttgc-----ttctggttttcaatcagaagcaaaacttcccagcttgtcagaatggctaccttgcagactataacctttcataagaaataaactcccctt-ctaaatttatgaattgtgtga-ttttttttagttgacaATCTTTACATTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5823457 622 +   6154872 gccacaaagt-tttttcttttttctctagcagctaaacaagcactggccttgacaggaacaatattaaaacaattacagctcaccctgtgttggggaacacaggctaactgaccccgtgttccacaagccataactacagttttaattggacaaaagacttattttggtaattttctcctgataagagaccactgaccatggactggttctggctagtttacagaagctgcgcatttgaatgcctttgtgtccctgcttcaccttttcatgtataaggcctaactgtaatgcaattaaatgttaagtctccacttcagagtgaccatgggtggtatgtaacatgcaagcttattcaatatgcatgcattaggacccccttcatgaatattcattgcctctgct------------------------------------ataacctattggatatgtatacttagcaaaccccttcagcataaattcctatgtcac---cgttcctcctgcaaagtgcttgc-----ttttggttttcaatcagaagcaaaacttcccagcctgtcagaatggctaccttgcagactataacctttcataggaaataaactcccctt-ctaaatttatgaattgtgtga-ttttttttagttgacaGTCTTTACATTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74549646 621 + 122973662 gccacaaagt-attttcttttttctctagcagctaaacaagcacaggccttgagaggaacaatattaaaacaattacagctcaccccgtgttgtggaacacaggctaaccaa-cccgtgttccacaagccataactacagttttaattggacaaaagactgatttcagtaattttctcctgataagagaccactgaccatggactggttcttgctagtttacagaagctgcacatttgaatgcctttgtgtccctgcttcaccttttcatgtacaaggcccaactctaatgcaattaaatgttaagtctccacttcagagtgaccatgggtggtatgtaacatgcaagcttattcaatatgcatgcattaggacccccttcatgaatattcattgcctcttct------------------------------------ataacctattggatatgtatacttagcaaaccccttcggcataaattcctgtgtcac---ctttcctcctgcaaagtgcttgc-----ttttggttttcaatcagaagcaaagcttcccagcctgtcagaatggctaccttgcagactataacctttcataagaaataaactcccctt-ctaaatttatgaattgcgtga-ttttttttagttgacaATCTTTTCATTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30014993 607 + 172585720 gccacaaaatatttttcttttttctgtagcagctaaacaagcactggcctcgagaggaacaatattaaaacaattacagttcatc-------------cataggctaactgaccccctgttcctcaagccataactacagttttaattggacaaatgactgatttcagtaattttctcctgataagagaccactgaccatggactggttctggctagtctacagaagctgcacatttgaatgcctttgtgtccctgcttcgccttttcatgtataaggcctaactgtaatgcaattaaatgttaagtctccacctcagagtgaccatgggtggtatataacatgcaagcttattcaacatgcatgcattaggactcccttcatgaatattcattgcctctgcc------------------------------------ataacctattggatatgtatacttagcaaaccccttcagcataaattcctgtgtca----ctttcctcctacaaa--gcttgc-----ttttggttttcaaccagaagccgagcttctcagcttgttagaatggctaccttgcagactataacccttcataagaaatgaagtctcctttctaaatttataaattgtgtga-ttttttttagttgacaATTTTT-TATTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29678891 607 - 170955103 gccacaaagtatttttcttttttctgtagcagctaaacaagcactggcctcgagaggaacaatattaaaacaattacagttcatc-------------cataggctaactgaccccctgttcctcaagccataactacagttttaattggacaaatgactgatttcagtaattttctcctgataagagaccactgaccatggactggttctggctagtctacagaagctgcacatttgaatgcctttgtgtccctgcttcgccttttcatgtataaggcctaactgtaatgcaattaaatgttaagtctccacctcagagtgaccatgggtggtatataacatgcaagcttattcaacatgcatgcattaggactcccttcatgaatattcattgcctctgcc------------------------------------ataacctattggatatgtatacttagcaaaccccttcagcataaattcctgtgtca----ctttcctcctacaaa--gcttgc-----ttttggttttcaaccagaagccgagcttctcagcttgttagaatggctaccttgcagactataacccttcataagaaatgaagtctcctttctaaatttataaattgtgtga-ttttttttagttgacaATTTTT-TATTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2725055 607 -   2996164 gccacaaagtatttttcttttttctgtagcagctaaacaagcactggcctcgagaggaacaatattaaaacaattacagttcatc-------------cacaggctaactgaccccctgttcctcaagccataactacagttttaattggacaaatgactgatttcagtaattttctcctgataagagaccactgaccatggactggttctggctagtctacagaagctgcacatttgaatgcctttgtgtccctgcttcaccttttcatgtataaggcctaactgtaatgcaattaaatgttaagtctccacctcagagtgaccatgggtggtatataacatgcaagcttattcaacatgcatgcattaggactcccttcatgaatattcattgcctctgcc------------------------------------ataacctattggatatgtatacttagcaaaccccttcagcataaattcctgtgtca----ctttcctcctacaaa--gcttgc-----ttttggttttcaaccagaagccgagcttctcagcttgtcagaatggctaccttgcagactataacccttcataagaaatgaagtctcctttctaaatttataaattgtgtga-ttttttttagttgacaATTTTT-TATTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     474842 607 +    766320 gccacaaagtatttttcttttttctctagcagctaaacaagcactggcctcgagaggaacaatattaaaacaattacagttcatc-------------cacaggctcactgaccccctgttcctcaagccataactacagttttaattggacaaatgactgatttcagtaattttctcctgataagagaccactgaccatggactggttctggctagtttacagaagctgcacatttgaatgcctttgtgtccctgcttcaccttttcatatataaggcctaactgtaatgcaattaaatgttaagtctccacctcagagtgaccatgggtggtatataacatgcaagcttattcaacatgcatgcattaggactcccttcatgaatattcattgcctctgcc------------------------------------ataacctattggatatgtatacttagcaaaccccttcagcataaattcctgtgtca----ctttcctcctacaaa--gcttgc-----ttttggttttcaaccagaagctgagcttcccagcttgtcagaatggctaccttgcagactataacccttcataagaaatgaagtctccttcctaaatttataaattgtgtga-ttttttttagttgacaATTTTT-TATTTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28932560 608 -  71996105 gccacaaagtatttttcttttttctgtagcagctaaacaagcactggcctcgagaggaacaatattaaaacaattacagttcatc-------------cacaggcccactgaccccctgttcctcaagccataactacagttttaattggacaaatgactgatttcagtaattttctcctgataagagaccactgaccatggcctggttctggctagtttacagaagctgcacatttgaatgcctttgtgtccctgcttcaccttttcatgtataaggcctaactgtaatgcaattaagtgttaagtctccacctcagagtgaccatgggtggtatataacatgcacgcttattcaacatgcatgcattaggacccccttcatgaatattcattgcctctgct------------------------------------ataacctattggatatgtatacttagcaaatcccttcagcataaattcctgtgtca----ctttcctcctgcaaa--gcttgc-----ttttggttttcgaccagaagctgagcttcccagcttgtcagaatggctaccttgcagactataacccttcataagaaataaagtctcctttctaaatttataaattgtgtgatttttttttagttgacaATTTTT-TATTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     108775 607 +    290775 gccacaaagtatttttcttttttctctagcagctaaacaagcactggcctcgagaggaacaatattaaaacaattacagttcatc-------------cacaggctcactgaccccctgttcctcaagccataactacagttttaattggacaaatgactgatttcagtaattttctcctgataagagaccactgaccatggactggttctggctagtttacagaagctgcacatttgaatgcctttgtgtccctgcttcaccttttcatgtataaggcctaactgtaatgcaattaaatgttaagtctccacctcagagtgaccatgggtggtatataacatgcaagcttattcaacatgcatgcattaggactcccttcatgaatattcattgcctctgcc------------------------------------ataacctattggatatgtatacttagcaaaccccttcagcataaattcctgtgtca----ctttcctcctacaaa--gcttgc-----ttttggttttcaaccagaagctgagcttcccagcttgtcagaatggctaccttgcagactataacccttcataagaaatgaagtctccttcctaaatttataaattgtgtga-ttttttttagttgacaATTTTT-TATTTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2556671 607 -   3067355 gccacaaagtagttttcttttttctctagcagctaaacaagcactggccttgagaggaacaatattaaagtaattacagctcatc-------------cacatgctaactgaccccctgttcctcaagccataactacagttttagttggataaatgactgatttcagtaattttctcctgataagagaccactgaccatggactggttctggctggtttacagaagctgcacatttgaatgcctttgtgtccctgcttcaccttttcatgtataaggcctaactgtaatgcaattaaatgttaagtctccacctcagagtgaccatgggtggtatataacacgcaagcttattcaacatgcatgcattaggacccccttcatgaatattcattgcctctgtc------------------------------------gtaacctattggatatgtatacttagcaaaccccttcagcataaattcctatgtca----ctttcctcctacaaa--gcttgc-----ttttggttttcaaccagaagctgagcttcccagcttgtcagaatggctaccttgcagactataacccttcataagaaataaagtcccctttctaaatttataaattgtgtga-ttttttttagttgacaATTTTT-TACTTC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           155805 612 -    242197 gcc-caaaat-tttttcttttttctctagcagctaaacaagcactggcctcaa---gaacaatattaaaacaattacagctcatc-------------cacaggctaactgacctcctgttccacaagccataactacagttttaattggacaaaagactgatttcagtaattttctcattttaagagaccactgaccatagactggttctggctagtttacagaagctgtgcatttgaatgccattgtgtccccgcttcaccttttcatgtataaggcctaactgtaatgcaattaaatgttaaggctccacttcagagtgactatgggtggtatgtaatatacaagcttattcaatatgcatgcattaggacccccttcataaatattcattgtctctgct------------------------------------ataacctattaaatatgtatacttagcaaactcctttagcataaattcctgtgcaaagtgctttcctcctgcaaagtgcttgctttttttttggtcttcaaccagaagctgagcttcccagcctgtcagaatggctaccctgcagactataacccttcataagaaataaagtctcctttataaaattataaa-tgtgtga--tttttttagttgGTCATCTTTTTATTTT
i saiBol1.JH378357         I 160 C 0
s cebCap1.NW_016107755v1     157773 613 -   1771730 gcc-taaatt-tttttcttttttctctagcagctaaacaagcactggccacaaaaggaacaatattaaaacaattacagctcacc-------------cacaggctaactgacctcctgttccacaagccataactacagttttaattggacaaaagactgatttcaggaattttctccttttaagagaccactgaccatggactgcttctggctagtttacagaagctgtgcatttgaatgccattgtgcccctgcttcaccttttcatgtataaggcctaattgtaatgcaattaaatgttaaggctccacttcagagtgaccatgggtgatatgtaatatacaagcttattcaatatgcatgcattaggacccccttcatgaatattcattgtctctgct------------------------------------ataacctattacatacgtatacttagcaaactcctttagcataaattcctgtgcaaagtgctttcctcctgcaaagtgcttgc--tttttttggtcttcacccagaagctgagcttcccagcctgtcagaatgactaccctgcagactataacccttcataagaaataaagtctcctttataaaattataaa-tgtgtga--tttttttagttgGTCATCTTTTTATTTT
i cebCap1.NW_016107755v1   I 4 C 0
e mm10.chr17               57792190  15 -  94987271 I
e proCoq1.NW_012152574v1     511398 164 +    730504 I
e otoGar3.GL873550            36619   0 +  18854210 C
e aotNan1.NW_018509740v1     217890 3760 -    457564 I

a score=361541.000000
s hg38.chr6_GL000254v2_alt   823218 43 +   4827813 GTTTTTCTGTGCATTTCAATGGATGTAAAAAACATA-CCTTTAT
s panTro5.chr6             29786057 43 + 175400573 GTTTTTCTGTGCATTTCAATGGATGTAAAAAACATA-CCTTTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30020702 43 + 173848474 GTTTTTCTGTGCATTTCAATGGATGTAAAAAACATA-CCTTTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5824079 43 +   6154872 GTTTTTCTGTGCATTTCAATGGATGTAAAAAACATA-CCTTTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74550267 43 + 122973662 ATTTTTATGTGCATTTCAATAGATGTAAAAAACATA-CCTTTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30015600 43 + 172585720 GCTTTTCTGTGCATTTCAATAGATGTAAAAAACATA-CCTTTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29679498 43 - 170955103 GCTTTTCTGTGCATTTCAATAGATGTAAAAAACATA-CCTTTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2725662 43 -   2996164 GCTTTTCTGTGCATTTCAATAGATGTAAAAAACATA-CCTTTAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     475449 44 +    766320 GCTTTTCTGTGCATTTCAATAGATGTAAAAAACATACCCTTTAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28933168 44 -  71996105 GCTTTTCTGTGCATTTCAATAGATGTAAAAAACATACCTTTTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     109382 44 +    290775 GCTTTTCTGTGCATTTCAATAGATGTAAAAAACATACCCTTTAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2557278 44 -   3067355 GTTTTTCTGTGCATTTCAATAGATGTAAAAAACATACTTTTTAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           156417 42 -    242197 GTTTTTCCACGCATTTCAATGGATGTAAAAAACAT--CTTTTAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     158386 44 -   1771730 GTTTTTCCGTGCATTTCAATGGATGTAAAAAACATACCTTTTAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     221650 44 -    457564 GTTTTTCTGTGCATTTCAATGGATGTAAAAAACATACCTTTTAT
i aotNan1.NW_018509740v1   I 3760 C 0
e mm10.chr17               57792190 15 -  94987271 I
e proCoq1.NW_012152574v1     511398 164 +    730504 I
e otoGar3.GL873550            36619  0 +  18854210 C

a score=785116.000000
s hg38.chr6_GL000254v2_alt   823261 83 +   4827813 CCATCTCAAAATGTAATTAGTGA-TTTTCCACCTTATTTACCTGCCTCTCCTATCCAGATAAAGTTTGTCAAATGTC-AACAAGT
s panTro5.chr6             29786100 83 + 175400573 CCATCTCAAAATGTAATTAGTGA-TTTTCCACCTTATTTACCTGCCTCTCCTATCCAGATAAAGTTTGTCAAATGTC-AACAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30020745 83 + 173848474 CCATCTCAAAATGTAATTAGTGA-TTTTCCACCTTATTTACCTGCCTCTCCTATCCAGATAAAGTTTGTCAAATGTC-AACAAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5824122 83 +   6154872 CCATCTCAAAATGTAATTAGTGA-TTTTCCACCTTATTTACCTGCCTCTCCTATCCAGATAAAGTTTGTCAAATGTC-AACAAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74550310 83 + 122973662 CCATCTCAAAGTGTAATTAGTGA-TTTTCCACCTTATTTACCTGCCTCTCCTATCCAGATAAAGTTTGTCAAATGTC-AAAAAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30015643 84 + 172585720 TCATCTCGAGATGTAATTAAAGG-TTTTCCACCTTATTTACCTGCCTCTCCTATCCAGATAAAGTTTGTCAAATGTCAAAAAAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29679541 84 - 170955103 TCATCTCGAGATGTAATTAAAGG-TTTTCCACCTTATTTACCTGCCTCTCCTATCCAGATAAAGTTTGTCAAATGTCAAAAAAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2725705 84 -   2996164 TCATCTCGAGATGTAATTAAAGG-TTTTCCACCTTATTTACCTGCCTCTCCTATCCAGATAAAGTTTGTCAAATGTCAAAAAAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     475493 81 +    766320 TCATCTCGAGATGTAATT--AGA-TTTTCCACCTTATTTACCTGCCTCTCCTATCCAGATAAAGTTTGTCAAATGTC-AAAAAGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28933212 83 -  71996105 TCATCTCGAGATGTAATTAAAGA-TTTTCTACCTTATTTACCTGCCTCTCCTATCCAGATAAAGTTTGTCAAATGTC-AAAAAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     109426 81 +    290775 TCATCTCGAGATGTAATT--AGA-TTTTCCACCTTATTTACCTGCCTCTCCTATCCAGATAAAGTTTGTCAAATGTC-AAAAAGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2557322 83 -   3067355 TCATCTTGAGATGTAATTAAAGA-TTTTCTACCTTATTTACCTGCCTCTCCTATCCAGACAAAGTTTGTCAAATGTC-AAAAAGT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           156459 83 -    242197 CCACCTCAAAATGTAATTAATGA-TTTTCCACCTTATTTATCTGCCTCTCCTATCCAGATAAAGTTTATCAAATGTC-AAAAAGT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     158430 84 -   1771730 CCACCTCAAAATGTAATTAATGATTTTTCCACCCTATTTATCTGTATCTCCTATCCAGATAAAGTTTGTCAAATGTC-AAAAAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     221694 83 -    457564 CCACCTCAAAATGTAATTAATGA-TTTTCCACCTTATTTATCTGCCTCTCCTATCCAGATAAAGTTTGTCAAATGTC-AAAAAGT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     511562 82 +    730504 ccatttcaaaatataagtaatga-tttaccaccttatttatcTGCCTCTCCTATCCTGAAAAAGTTTGTCAAATGTC--AAAAGT
i proCoq1.NW_012152574v1   I 164 C 0
e mm10.chr17               57792190 15 -  94987271 I
e otoGar3.GL873550            36619  0 +  18854210 C

a score=546864.000000
s hg38.chr6_GL000254v2_alt   823344 54 +   4827813 AAATACGAGGCTTCAAAAGATGTACATCAGACTCTAAAAACAACTCTCAAAGAG
s panTro5.chr6             29786183 54 + 175400573 AAATACGAGGCTTCAAAAGATGTACATCAGACTCTAAAAACAACTCTCAAAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30020828 54 + 173848474 AAATACGAGGCTTCAAAAGATGTACATCAGACTCTAAAAACAACTCTCAAAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5824205 54 +   6154872 AAATACGAGGCTTCAAAAGATGTACATCAGACTCTAAAAACAACTCTCAAAGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74550393 54 + 122973662 AAATACAAGGCTTCAAAAGATGTACATCAGACTCTAAAAACAACTCTCAAAGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30015727 54 + 172585720 AAATACAGAGCTTCAAAAGATGTACACCAGACTCTAAAAACAACTGTCAAAGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29679625 54 - 170955103 AAATACAGAGCTTCAAAAGATGTACACCAGACTCTAAAAACAACTGTCAAAGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2725789 54 -   2996164 AAATACAGAGCTTCAAAAGATGTACACCAGACTCTAAAAACAACTGTCAAAGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     475574 54 +    766320 AAATACAGAGCTTCAAAAGATGTACACCAGACTCTAAAAACAACTGTCAAAGAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28933295 54 -  71996105 AAATACAGAGCTTCAAAAGATGTACACCAGACTCTAAAAACAACTGTCAAAGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     109507 54 +    290775 AAATACAGAGCTTCAAAAGATGTACACCAGACTCTAAAAACAACTGTCAAAGAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2557405 54 -   3067355 AAATACAGAGCTTCAAAAGATGTACACCAGACTCTAAAAACAACTGTCAAAGAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           156542 54 -    242197 AAATACAAAGCTTCAAAACATGTACACCAGACTCTCAAAACAACTCTCAAAGAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     158514 54 -   1771730 AAATACAAAGCTTCAAAACATGTACACCAGAGTCTCAAAACAACTCTCAAAGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     221777 54 -    457564 AAATACAAAGCTTCAAAACATGTACACCAAACTCTCAAAACAACTCTCAAAGAG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     511644 52 +    730504 AAAT--TAAGTttcaaaaggtgtacaccaggctctaaaaacaacttccaaagaa
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57792205 51 -  94987271 AACTATAGGGCTTCAAACGTTGTATACAGATCCCTAAGCAAACC---CAAAGAG
i mm10.chr17               I 15 C 0
e otoGar3.GL873550            36619  0 +  18854210 C

a score=1496026.000000
s hg38.chr6_GL000254v2_alt   823398 142 +   4827813 AATTTCCAAAATATGACAGCCTCATGAAGATACTCATAGCCATAGGATACCCTCTGTCAATACTTCAGAAGGAAATCCTGGGTAGGACACATAATCACTGAACTGTTA-G----TTTCTTTTCAAATATCCCACTGCTTTATAATAA
s panTro5.chr6             29786237 142 + 175400573 AATTTCGAAAATATGACAGCCTCATGAAGATACTCATAGCCATAGGATACCCTCTGTCAATACTTCAGAAGGAAATCCTGGGTAGGACACATAATCACTGAACTGTTA-G----TTTCTTGTCAAATATCCCACTGCTTTATAATAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30020882 142 + 173848474 AATTTCGAAAATATGACAGCCTCATGAAGATACTCATAGCCATAGGATACCCTCTGTCAATACTTCAGAAGGAAATCCTGGGTAGGACACATAATCACTGAACTGTTA-G----TTTCTTGTCAAATATCCCACTGCTTTATAATAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5824259 142 +   6154872 AATTTCCAAAACATGACAGCCTCATGAAGATACTCATAGCCATAGGATACCCTCTGTCAATACTTCGGAAGGAAATCCTGGGTAGCACACATAATCACTGAACTGTTA-G----TTTCTTTTCAAATATCCCACTGCTTTATAATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74550447 142 + 122973662 AATTTCCAAAATATCACAGCCTCATGAAGATACTCATAGCCATAGGATACCCTCTGTCAATACTTCAGAAGGAAATCCTGGGTAGGACACATAATCACTGAACTGTTA-G----TTTCTTTTCAAATATCCCACTGCTTTATAATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30015781 137 + 172585720 AATTTCTAAAATATGACAGCCTCAT-AAGATAC----AGCAATAGGATACCCTCTGTCAATACTTCAGAAGGAAATCCTGGGTAGGGCACATAATCACTGAACTGTTA-T----TTTTTTTTCAAATCTCCCACTGCTTTACAATAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29679679 137 - 170955103 AATTTCTAAAATATGACAGCCTCAT-AAGATAC----AGCAATAGGATACCCTCTGTCAATACTTCAGAAGGAAATCCTGGGTAGGGCACATAATCACTGAACTGTTA-T----TTTTTTTTCAAATCTCCCACTGCTTTACAATAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2725843 137 -   2996164 AATTTCTAAAATATGACAGCCTCAT-AAGATAC----AGCAATAGGATACCCTCTGTCAATACTTCAGAAGGAAATCCTGGGTAGGGCACATAATCACTGAACTGTTA-T----TTTTTTTTCAAATCTCCCACTGCTTTACAATAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     475628 138 +    766320 AATTTCTAAAATATGACAGCCTCAT-AAGATAC----AGCAATAGGATACCCTCTGTCAATAGTTCAGAAGGAAATCCTGGGTAGGACACATAATCACTGAACTGTTATT----TTTTTTTTCAAATCTCCCACTGCTTTATAATAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28933349 137 -  71996105 AATTTCTAAAATATGACAGCCTCAT-AAGATAC----AGCAATAGGATACCCTCTGTCAATACTTCAGAAGGAAATCCTGGGTAGGACACATAATCACTGAACTGTTA-G----TTTCTTTTCAAATATCCCACTGCTTTATAATAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     109561 138 +    290775 AATTTCTAAAATATGACAGCCTCAT-AAGATAC----AGCAATAGGATACCCTCTGTCAATAGTTCAGAAGGAAATCCTGGGTAGGACACATAATCACTGAACTGTTATT----TTTTTTTTCAAATCTCCCACTGCTTTATAATAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2557459 137 -   3067355 AATTTCTAAAATATGACAGCCTCAT-AAGATGC----AGCAATAGGATACCCTCTATCAGTACTTCAGAAGGAAATCCTGGGTAGGACACATAATCACTGAACTGTTA-G----GTTTTTTTCAAATATCCCACTGCTTTATAATAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           156596 141 -    242197 AATTTCCAAAATATGATAGCTTCAT-AAGATACTCACAGACATAGGAAACCCTCTGTCACTACTTCAGAAGGAAATCCTGAGTAGGACACATAATCACTGAACTGTTA-G----TTTCTTTTCAAATATCCCACTGCTTTGTAATAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     158568 141 -   1771730 AATTTCCAAAATATGACAGCCTCAT-AAGATACTCACAGACATAGGAAACCCTCTGTCACTACTTCAGAAGGAAATCCTGAGTAGGACACGTAATCACTGAACTGCTA-G----TTTCTTTTCAAATATCCCACTGCTTTGTAATAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     221831 141 -    457564 AATTTCCAAAATATGACAGCCTCAT-AAGATACTCACAGACATAGGAAACCCTCTGTCACTACTTCAGAAGGAAATCCTGAGTAGGACACACAATCACTGAACTGTTA-G----TTTCTTTTCAAATATCCCACTGCTTTGTAATAA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     511696 142 +    730504 aatttccaagatttggcagcctcat-aggatactcacagccatgcgatatcctctgtgactacttcagaaggaaacccttgttaggacacataatctctgagctgtta-g---cttccttttttaatgtcccattgctttataataa
i proCoq1.NW_012152574v1   C 0 I 103
s otoGar3.GL873550            36619 145 +  18854210 aaTTTCCAAGATTTGGCAGCCTCAT-AGGATACTCCCAGCCACAGAATACCCTCTATGACTAATTCAGAAGGAAACTTTGATTAGGAGACATAATCTCTGAACTGCTG-GTTTCTTTTTTTTTTAATGTCTCATTGCTTTATAATAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57792256 138 -  94987271 GATTTCCAAGATTTGGCAGCCTCAC-AGAATGCTCTCAGCCATGACTCACCCTCTGTGACTAATTCAGAAAG-AACCCTAGTTAAG--ACATAGTCTCTACACTGCTG-C----GTTCTTATTAATGTTCCCGTCCATTTCTGGTAA
i mm10.chr17               C 0 C 0

a score=641521.000000
s hg38.chr6_GL000254v2_alt   823540 64 +   4827813 TAACTCACATACTACCGTGACACTATGTTCAGTGTTTCTTGTTAATTTATATTTCTTGTGTTTT
s panTro5.chr6             29786379 64 + 175400573 TAACTCACATACTACCGTGACACTATGTTCAGTGTTTCTTGTTAATTTATATTTCTTGTGTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30021024 64 + 173848474 TAACTCACATACTACCGTGACACTATGTTCAGTGTTTCTTGTTAATTTATATTTCTTGTGTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5824401 64 +   6154872 TAACTCACATACTACCGTGACACTATGTTCAGTGtttcttgttaatttatatttcttgtgtttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74550589 64 + 122973662 TAACTTACATATTACCGTGACACTATGTTCAGTGTTTCTTGTTAATTTATATTTCTTGTGTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30015918 64 + 172585720 TAACTTACATATTACAGTGACACTACGTTCAATGTTTCTTGttaatttatatttcttgtatttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29679816 64 - 170955103 TAACTTACATATTACAGTGACACTACGTTCAATGTTTCTTGTTAATTTATATTTCTTGTATTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2725980 64 -   2996164 TAACTTACATATTACAGTGACACTACGTTCAATGTTTCTTGTTAATTTATATTTCTTGTATTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     475766 64 +    766320 TAACTCACATATTACAGTGACACTACGTTCAGTGTTTCTTGTTAATTTATATTTCTTGTGTTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28933486 64 -  71996105 TAACTTACATATTACAGTGACACTATGTTCAGTGTTTCTTGTTAATTTATATTTCTTGTGTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     109699 64 +    290775 TAACTCACATATTACAGTGACACTACGTTCAGTGTTTCTTGTTAATTTATATTTCTTGTGTTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2557596 64 -   3067355 TAAGTTACATATTACAGTGACACTATGTTCAGTGTTTCTTGTTAGCTTATATTTATTGTGTTTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           156737 64 -    242197 TAACTTACATGTAACAGTGACACTATGTTCAGTGTTTCttattaatttatatttcttatatttt
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     158709 64 -   1771730 TAACTTACATATTACAGTGACACTATGTTCAGTGTTTCTTATTAATTTATATTTCTTATATTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     221972 64 -    457564 TAACTTACATACTACAGTGACACTATGTTCAGTGTTTCTTGTTAATTTATATTTCTTATATTTT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            36764 63 +  18854210 TAATTCACATCTTACAGTGATGCTATTTTCAGCGGTACTTGTTAAC-TGTGTTTCCTATATTTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57792394 57 -  94987271 ---TGTCCATGTTGTGGTGATGCTGTGCTTAATGG----TGTTAATGTGTATCTCTTGTATTTT
i mm10.chr17               C 0 I 5
e proCoq1.NW_012152574v1     511838 103 +    730504 I

a score=32760.000000
s hg38.chr6_GL000254v2_alt   823604 3 +   4827813 TAT
s panTro5.chr6             29786443 3 + 175400573 TAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30021088 3 + 173848474 TAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5824465 3 +   6154872 tat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74550653 3 + 122973662 TAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30015982 3 + 172585720 tat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29679880 3 - 170955103 TAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726044 3 -   2996164 TAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     475830 3 +    766320 TAT
i cerAty1.NW_012002711v1   C 0 I 9
s chlSab2.chr17            28933550 3 -  71996105 TAT
i chlSab2.chr17            C 0 I 6
s manLeu1.NW_012099233v1     109763 3 +    290775 TAT
i manLeu1.NW_012099233v1   C 0 I 9
s colAng1.NW_012115566v1    2557660 3 -   3067355 TAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           156801 3 -    242197 tat
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     158773 3 -   1771730 TAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222036 3 -    457564 TAT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            36827 3 +  18854210 TAT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57792451 5 -  94987271 I
e proCoq1.NW_012152574v1     511838 103 +    730504 I

a score=23469.000000
s hg38.chr6_GL000254v2_alt   823607 6 +   4827813 TTCTAT
s panTro5.chr6             29786446 6 + 175400573 TTCTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30021091 6 + 173848474 TTCTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5824468 6 +   6154872 ttttat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74550656 6 + 122973662 TTCTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30015985 6 + 172585720 atctat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29679883 6 - 170955103 ATCTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726047 6 -   2996164 ATCTAT
i macNem1.NW_012011356v1   C 0 C 0
s colAng1.NW_012115566v1    2557663 6 -   3067355 ATCTAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           156804 6 -    242197 atCTAC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     158776 6 -   1771730 ATCTAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222039 6 -    457564 ATCTAC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            36830 6 +  18854210 AATCAC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57792451 5 -  94987271 I
e proCoq1.NW_012152574v1     511838 103 +    730504 I
e manLeu1.NW_012099233v1     109766 9 +    290775 I
e chlSab2.chr17            28933553 6 -  71996105 I
e cerAty1.NW_012002711v1     475833 9 +    766320 I

a score=8460.000000
s hg38.chr6_GL000254v2_alt   823613 6 +   4827813 CTAAtg
s panTro5.chr6             29786452 6 + 175400573 CTAAtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30021097 6 + 173848474 CTAAtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5824474 6 +   6154872 CTAAtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74550662 6 + 122973662 CTAAtg
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873550            36836 6 +  18854210 CTAATG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57792451 5 -  94987271 I
e proCoq1.NW_012152574v1     511838 103 +    730504 I
e saiBol1.JH378357           156810 0 -    242197 C
e aotNan1.NW_018509740v1     222045 0 -    457564 C
e cebCap1.NW_016107755v1     158782 0 -   1771730 C
e colAng1.NW_012115566v1    2557669 0 -   3067355 C
e manLeu1.NW_012099233v1     109766 9 +    290775 I
e chlSab2.chr17            28933553 6 -  71996105 I
e cerAty1.NW_012002711v1     475833 9 +    766320 I
e macNem1.NW_012011356v1    2726053 0 -   2996164 C
e macFas5.chr4             29679889 0 - 170955103 C
e rheMac8.chr4             30015991 0 + 172585720 C

a score=697892.000000
s hg38.chr6_GL000254v2_alt   823619 772 +   4827813 agagacaggactagctggatttcctaggccgactaagaatccctaagcctagctggggaggtgactgcatccacctttaaacacggggcttgcaacttagctcacacctgaccaatcaggtagtaaagagagctcactaaaatgctaattaggcaaaaacaggaggtaaagatatagccaatcatctattgcctgagatcacagcgggagggacaatgatcgggatataaacacaggcattcgagccagcaac-gctaccctctttgggtcccctccctttgtatgggagctctgtcttcactctactaaatcttgcaactgcactcttctggtctatgtttcttacggctcgaggtgagctttcgcttgccatccaccactgccgtttgccaccgtcgcagacccgcggctgacttccatccct-cggatctggcagggtgtccgctgtgcttctgaaccagtgaggcgcccattgccgctcctgattgggctaaaggcgtaccattgttctgcacggctaagtgcccaggttcttcctaatcgagctgaacactagtcactgggtccacggttctcttccgtgacccatggcttctaatagagctgtaacaaccaccacatgacccaagattccattccttggaatccatgaggccaagaaccccaggtcagagaacacgaggcttgccaccatcttggaagcggcctgcggccattttggaagcagcccaccaccatcttgagagctctgggagcaaagaccccctggtaa
s panTro5.chr6             29786458 773 + 175400573 agagacaggactagctggatttcctaggccgactaagaatccctaagcctagctggggaggtgactgcatccacctttaaacacggggcttgcaacttagctcacacctgaccaatcaggtagtaaagagagctcactaaaatgctaattaggcaaaaacaggaggtaaagatatagccaatcatctattgcccgagatcacagcgggagggacaatgatcaggatataaacacaggcattcgagccagcaac-gctaccctctttgggtcccctccctttgtatgggagctctgtcttcactctactaaatcttgcaactgcactcttctggtccatgtttcttacggctcgagctgagctttcgcttgccatccaccactgccttttgccaccgtcgcagacccgcggctgacctccatccctccggatccggcagggtgtccgctgtgcttctgaaccagtgaggcgcccattgccactcctgattgggctaaaggcttaccattgttctgcacggctaagtgcccgggttcatcctaatcgagctgaacactagtcactgggtccacggttctcttccgtgacccatggcttctaatagagctgtaacaaccaccacatggcccaagattccattccttggaatccatgaggccaaaaaccccaggtcagagaacacgaggcttgccaccatcttggaagtggcccgcggccattttggaagcagcccaccaccatcttgagagctctgggagcaaagaccccctggtaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30021103 773 + 173848474 agagacaggactagctggatttcctaggccgactaagaatccctaagcctagctggggaggtgactgcatccacctttaaacacggggcttgcaacttagctcacacctgaccaatcaggtagtaaagagagctcactaaaatgctaattaggcaaaaacaggaggtaaagatatagccaatcatctattgcccgagatcacagcgggagggacaatgatcaggatataaacacaggcattcgagccagcaac-gctaccctctttgggtcccctccctttgtatgggagctctgtcttcactctactaaatcttgcaactgcactcttctggtccatgtttcttacggctcgagctgagctttcgcttgccatccaccactgccgtttgccaccttcgcagacccgcggctgacctccatccctccggatccggcagggtgtccgctgtgcttctgaaccagtgaggcgcccattgccactcctgattgggctaaaggcttaccattgttctgcacggctaagtgcccgggttcatcctaatcgagctgaacactagtcactgggtccacggttctcttccgtgacccatggcttctaatagagctgtaacaaccaccacatggcccaagattccattccttggaatccatgaggccaaaaaccccaggtcagagaacacgaggcttgccaccatcttggaagtggcccgcggccattttggaagcagcccaccaccatcttgagagctctgggagcaaagaccccctggtaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5824480 773 +   6154872 acagacaggactagctggatttcctaggccgactaagaatccctaagcctagctggggaggtgactgcatccacctttaaacacggggcttgcaacttagctcacacctgaccaatcaggtagtaaagagagctcactaaaatgctaattaggcaaaaacaggaggtaaagatatagccaatcatctattgcccgagatcacagagggagggacaatgatcgggatataaacacaggcattcgagccagcaac-gctaccctcttcgggtcccctccctttgtatgggagctctgtcttcactctactaaatcttgcaactgcactcttctggttcatgtttcttacggcttgagctgagctttcgcttgccatccaccactgccgtttgccaccgtcgcagacccgcagctgacttccatccctccggatccggcagggtgtccgctgtgcttctgaaccagtgaggcgcccattgccgctcctgactgggctaaaggcttaccactgttctgcacggctaagtgcccgggttcatcctaatcgagctgaacactagtcactgggtccacggttctcttccgtgacccatggcttctaatagagctgtaacaaccaccacatggcccaagattccattccttggaatccatgaggccaagaaccccaggtcagagaacacgaggcttgccaccatcttggaagcggcctgcggccattttggaagcagcccaccaccatcgtgagagttctgggagcaaagaccccctggtaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74550668 774 + 122973662 agagacaggactagctggatttcctaggccaactaagaatccctaagcctagctgagaaggtgactgcatccacctttaaacacggggcttgcaacttagctcacacctgaccaatcaggtagtaaagagagctcactaaaatgctaattaggcaaaaacaggaggtaaagatatagccaatcatctattgcctgagagcacggcaggagggacaatgatggggatataaacacaggcattcgagccagcaatggctaccctctttgggtcccctccctttgtatgggagctctgtcttcactctattaaatcttgcagctgcactcttctggtccatgtttcttactgctcgagctgagctttcgctcgccagccaccactgctgtttgccaccatctcagacccgtggctgacttccatccctccagatctggcagggtgtccgctgtgctcctgaaccagtgaggcgcccattgccgctcctgatcaggctaaaggcttaccattgttctgcatggctaagtgcccgggttcatcctaatcgagctgaacactagtcactgggtccacagttctcttccatgacccatggcttctaatagagctataacactcaccacatggcccaaaattccattccttggaatccgtgaggccaagaaccccaggtcagagaacacgaggcttgccaccatcttcgaagtggcccactgccattttggaagcagcccgccaccatcttgggagctctaggagcaaagaccccctggtaa
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               57792451   5 -  94987271 I
e proCoq1.NW_012152574v1     511838 103 +    730504 I
e saiBol1.JH378357           156810   0 -    242197 C
e otoGar3.GL873550            36842   0 +  18854210 C
e aotNan1.NW_018509740v1     222045   0 -    457564 C
e cebCap1.NW_016107755v1     158782   0 -   1771730 C
e colAng1.NW_012115566v1    2557669   0 -   3067355 C
e manLeu1.NW_012099233v1     109766   9 +    290775 I
e chlSab2.chr17            28933553   6 -  71996105 I
e cerAty1.NW_012002711v1     475833   9 +    766320 I
e macNem1.NW_012011356v1    2726053   0 -   2996164 C
e macFas5.chr4             29679889   0 - 170955103 C
e rheMac8.chr4             30015991   0 + 172585720 C

a score=2865.000000
s hg38.chr6_GL000254v2_alt   824391 2 +   4827813 ca
s panTro5.chr6             29787231 2 + 175400573 ca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30021876 2 + 173848474 ca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5825253 2 +   6154872 ca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74551442 2 + 122973662 ca
i nomLeu3.chr1a            C 0 C 0
s mm10.chr17               57792456 2 -  94987271 CA
i mm10.chr17               I 5 C 0
e proCoq1.NW_012152574v1     511838 103 +    730504 I
e saiBol1.JH378357           156810 0 -    242197 C
e otoGar3.GL873550            36842 0 +  18854210 C
e aotNan1.NW_018509740v1     222045 0 -    457564 C
e cebCap1.NW_016107755v1     158782 0 -   1771730 C
e colAng1.NW_012115566v1    2557669 0 -   3067355 C
e manLeu1.NW_012099233v1     109766 9 +    290775 I
e chlSab2.chr17            28933553 6 -  71996105 I
e cerAty1.NW_012002711v1     475833 9 +    766320 I
e macNem1.NW_012011356v1    2726053 0 -   2996164 C
e macFas5.chr4             29679889 0 - 170955103 C
e rheMac8.chr4             30015991 0 + 172585720 C

a score=22373.000000
s hg38.chr6_GL000254v2_alt   824393 3 +   4827813 CTA
s panTro5.chr6             29787233 3 + 175400573 CTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30021878 3 + 173848474 CTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5825255 3 +   6154872 CTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74551444 3 + 122973662 CTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30015991 3 + 172585720 CTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29679889 3 - 170955103 CTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726053 3 -   2996164 CTA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28933559 3 -  71996105 CTA
i chlSab2.chr17            I 6 C 0
s colAng1.NW_012115566v1    2557669 3 -   3067355 CTA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           156810 3 -    242197 CTA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     158782 3 -   1771730 CTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222045 3 -    457564 CTA
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57792458 3 -  94987271 TTG
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     511838 103 +    730504 I
e otoGar3.GL873550            36842 0 +  18854210 C
e manLeu1.NW_012099233v1     109766 9 +    290775 I
e cerAty1.NW_012002711v1     475833 9 +    766320 I

a score=32760.000000
s hg38.chr6_GL000254v2_alt   824396 3 +   4827813 ATA
s panTro5.chr6             29787236 3 + 175400573 ATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30021881 3 + 173848474 ATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5825258 3 +   6154872 ATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74551447 3 + 122973662 ATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30015994 3 + 172585720 ATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29679892 3 - 170955103 ATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726056 3 -   2996164 ATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     475842 3 +    766320 ATA
i cerAty1.NW_012002711v1   I 9 C 0
s chlSab2.chr17            28933562 3 -  71996105 ATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     109775 3 +    290775 ATA
i manLeu1.NW_012099233v1   I 9 C 0
s colAng1.NW_012115566v1    2557672 3 -   3067355 ATA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           156813 3 -    242197 ATA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     158785 3 -   1771730 ATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222048 3 -    457564 ATA
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57792461 3 -  94987271 ATA
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     511838 103 +    730504 I
e otoGar3.GL873550            36842 0 +  18854210 C

a score=300871.000000
s hg38.chr6_GL000254v2_alt   824399 31 +   4827813 TAGAATGTGATCTCCTTT---GATAAGACTAGGG
s panTro5.chr6             29787239 31 + 175400573 TAGAATGTGATCTCCTTT---GATAAGACTAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30021884 31 + 173848474 TAGAATGTGATCTCCTTT---GATAAGACTAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5825261 31 +   6154872 CAGAATGTGATCTCCTTT---GATAAGACTAGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74551450 31 + 122973662 TAGAATGTGATCTCCTTT---GATTAGACTAGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30015997 31 + 172585720 TAGAATACGATCTCCTTT---GATTAGACCAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29679895 31 - 170955103 TAGAATACGATCTCCTTT---GATTAGACCAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726059 31 -   2996164 TAGAATACGATCTCCTTT---GATTAGACCAAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     475845 31 +    766320 TAGAATATGATCTCCTTT---GATTAGACCAGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28933565 31 -  71996105 TAGAATATGATCTCCTTT---GATTAGACCAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     109778 31 +    290775 TAGAATATGATCTCCTTT---GATTAGACCAGGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2557675 31 -   3067355 TAGAATACGATCTCCTTT---GATTAGACTAGGG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           156816 31 -    242197 TAGAATGTGAGCTCCTTT---GATTAGACTAGGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     158788 31 -   1771730 TGGAATGTGAGCTCCTTT---GATTAGACTAGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222051 31 -    457564 TAGAATGTGATCTCCTTT---GATTAGACTAGGG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            36842 31 +  18854210 CAGCTCATTACCTTTTTA---AATTAGATCAGGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57792464 34 -  94987271 TAGAACATAATATCCTTTTTAAATTAGACCAGGA
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     511838 103 +    730504 I

a score=908499.000000
s hg38.chr6_GL000254v2_alt   824430 82 +   4827813 CCTCACTCACAGAAGGTA-GGGACTATATCTAAGTCTTACTTCAATAGCTGGAAAATCCTAAAAGATGGGAAAACTCACCCCT
s panTro5.chr6             29787270 82 + 175400573 CCTCACTCACAGAAGGTA-GGGACTATATCTAAGTCTTACTTCAATAGCTGGAAAATCCTAAAAGATGGGAAAACTCACCCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30021915 82 + 173848474 CCTCACTCACAGAAGGTA-GGGACTATATCTAAGTCTTACTTCAATAGCTGGAAAATCCTAAAAGATGGGAAAACTCACCCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5825292 82 +   6154872 CCTCACTCACAGAAGGTA-GGGACTATATCTAAGTCTTACTTCAATAGCTGGAAAATCCTAAAAGATGGGAAAACTCACCCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74551481 82 + 122973662 CGTCACTCACAGAAGGTA-GGGACTATATCTAAGTCTTACTTCAATAGCTGGAAAATCCTAAAAGATGGGAAAACTCACCCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30016028 82 + 172585720 CCTCACTCACAGAAGGTA-GGGACTATGTCTAAGTCTTACTTCAATAGCTGGAAAACCCTAAAAGACTGGAAAACTCACTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29679926 82 - 170955103 CCTCACTCACAGAAGGTA-GGGACTATGTCTAAGTCTTACTTCAATAGCTGGAAAACCCTAAAAGACTGGAAAACTCACTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726090 82 -   2996164 CCTCACTCACAGAAGGTA-GGGACTATGTCTAAGTCTTACTTCAATAGCTGGAAAACCCTAAAAGACTGGAAAACTCACTCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     475876 82 +    766320 CCTCACTCACAGAAGGTA-GGAACTATGTCTAAGTCTTACTTCAATAGCTGGAAAACCCTAAAAGACTGGAAAACTCACTCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28933596 76 -  71996105 CCTCACTCTCAGAAGGTA-GGGACTATGTCTAAGTCTTACTT------CTGGAAAACCCTAAAAGACTGGAAAACTCACTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     109809 82 +    290775 CCTCACTCACAGAAGGTA-GGAACTATGTCTAAGTCTTACTTCAATAGCTGGAAAACCCTAAAAGACTGGAAAACTCACTCCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2557706 82 -   3067355 CCTCACTCACAGAAGATA-GGGACTATGTCTAAGTCTTACTTCAATAGCTGGAAAACCCTAAAAGACTGGAAAACTCACTCCC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           156847 83 -    242197 CTTCACTCACAGAAGGTAGGGGACTATATCTAGGTCTTATTTCAACAACTGGGAAATCCTAAAAGATGGGAAAACTCACCCCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     158819 82 -   1771730 CTTCACTCACAGAAGGTA-GGGACTATATCTAAGTCTTATTTCAACAACTGGAAAATCCTAAAAGATGGGAAAACTCACCCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222082 82 -    457564 CTTCACTCACAGAAGGTA-GGGACTATATCTAAGTCTTATTTCAATAACTGGAAAATCCTAAAAGATGGGAAAACTCAACCCT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     511941 82 +    730504 CCTCACTCATAGAAAGTA-GGGACTATGTCTAACTCTAACTTCAATAACAGAAAAGCTTTAAAAGATGGGAAAGCTCACCCCT
i proCoq1.NW_012152574v1   I 103 I 26
s otoGar3.GL873550            36873 82 +  18854210 ACTCACTCATGGAAAGCA-AGGACCATACCTAAAGCTAACTTCAGTAACAGAAAAATTCTAAAAGACAGGGAAGCTCACCCCT
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57792498 74 -  94987271 TCCCATTCACAGAAGACA-AAAACTATATCTGAGTTTAACTTCATTTACTGAAGAATT---AAGTTAGGGAAGAATCA-----
i mm10.chr17               C 0 C 0

a score=171033.000000
s hg38.chr6_GL000254v2_alt   824512 16 +   4827813 AATGGCCACTTGAAAG
s panTro5.chr6             29787352 16 + 175400573 AATGGCCACTTGAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30021997 16 + 173848474 AATGGCCACTTGAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5825374 16 +   6154872 AATGGCCACTTGAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74551563 16 + 122973662 AATGGCCACTTGAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30016110 16 + 172585720 AATGGCCACTTGAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29680008 16 - 170955103 AATGGCCACTTGAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726172 16 -   2996164 AATGGCCACTTGAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     475958 16 +    766320 AATGGCCACTTGAAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28933672 16 -  71996105 AATGGCCACTTGAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     109891 16 +    290775 AATGGCCACTTGAAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2557788 16 -   3067355 AATGGCCACTTGAAAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           156930 16 -    242197 AATGGCCACTTGAAAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     158901 16 -   1771730 AACGGCCGCTTGAAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222164 16 -    457564 AATGGCCGCTTGAAAG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            36956 16 +  18854210 TATTGCCACTTGAAAG
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57792572 10 -  94987271 ---GGCC---TGTAAA
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     512023 26 +    730504 I

a score=525213.000000
s hg38.chr6_GL000254v2_alt   824528 43 +   4827813 CCTGAGAAGACCTCCCTCATACTCCATTCAGAAATATTCTCCC
s panTro5.chr6             29787368 43 + 175400573 CCTGAGAAGACCTCCCTCATACTCCATTCAGAAATATTTTCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30022013 43 + 173848474 CCTGAGAAGACCTCCCTCATACTCCATTCAGAAATATTTTCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5825390 43 +   6154872 CCTGAGAAGACCTCCCTCATACTCCATTCAGAAATATTTTCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74551579 43 + 122973662 CCTGAGAAGACCTCCCTCGTACTCCATTCAGAAATATTTTCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30016126 43 + 172585720 CCTGAGAAGACCTCCCTCATACTCCATTCAGAAATATTTTCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29680024 43 - 170955103 CCTGAGAAGACCTCCCTCATACTCCATTCAGAAATATTTTCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726188 43 -   2996164 CCTGAGAAGACCTCCCTCATACTCCATTCAGAAATATTTTCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     475974 43 +    766320 CCTGAGAAGACCTGCCTCATACTCCATTCAGAAATATTTTCCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28933688 43 -  71996105 CCTGAGAAGACCTCCCTCATACTCCATTCAGAAATATTTTCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     109907 43 +    290775 CCTGAGAAGACCTGCCTCATACTCCATTCAGAAATATTTTCCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2557804 43 -   3067355 CCTGAGAAGACCTCCCTCATACTCCATTCAGAAATATTTTCCC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           156946 43 -    242197 CCTGAAAAGACCTCCCTCATCCTCCATTCAGAAATATTTTCCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     158917 43 -   1771730 CCTGAAAAGACCTCCCTCATACTCCATTTAGAAATAGTTTCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222180 43 -    457564 CCTGAGAAGACCTCCCTCACACTCCATTCAGAAATACTTTCCC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     512049 43 +    730504 CCTGGGAGGACCTCCCTCATGCTCCATTCAAAAGTATTTTCCC
i proCoq1.NW_012152574v1   I 26 C 0
s otoGar3.GL873550            36972 43 +  18854210 TATGGGAGGACCTCGCTCATGCTGCACTCAAAAATATTTTCCC
i otoGar3.GL873550         C 0 I 684
s mm10.chr17               57792582 42 -  94987271 CTTTATGAAAACTTCCTCATACTCCATTCAAGGA-ACCTTCCC
i mm10.chr17               C 0 C 0

a score=24752.000000
s hg38.chr6_GL000254v2_alt   824571 2 +   4827813 AA
s panTro5.chr6             29787411 2 + 175400573 AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30022056 2 + 173848474 AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5825433 2 +   6154872 AA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74551622 2 + 122973662 AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30016169 2 + 172585720 AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29680067 2 - 170955103 AA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726231 2 -   2996164 AA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     476017 2 +    766320 AA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28933731 2 -  71996105 AA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     109950 2 +    290775 AA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2557847 2 -   3067355 AA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           156989 2 -    242197 AA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     158960 2 -   1771730 AA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222223 2 -    457564 AA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     512092 2 +    730504 AA
i proCoq1.NW_012152574v1   C 0 I 48
s mm10.chr17               57792624 2 -  94987271 AA
i mm10.chr17               C 0 C 0
e otoGar3.GL873550            37015 684 +  18854210 I

a score=431112.000000
s hg38.chr6_GL000254v2_alt   824573 45 +   4827813 TCTAGATATTGCAGACATTTCTTCACTGGAAGATCTGTGTTAAGC
s panTro5.chr6             29787413 45 + 175400573 TCTAGATATTGCAGACATTTCTTCACTGGAAGATCTGTGTTAAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30022058 45 + 173848474 TCTAGATATTGCAGACATTTCTTCACTGGAAGATCTGTGTTAAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5825435 45 +   6154872 TCTAGATATTGCAGACATTTCTTCACTGGAAGATCTGTGTTAAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74551624 44 + 122973662 TCTAG-TACTGCAGACGTTTCTTCACTGGAGGATCTGTGTTAAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30016171 45 + 172585720 TCTAGATATTGCAGACATTTCTTCACTGGAGGATCTGTGTTAAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29680069 45 - 170955103 TCTAGATATTGCAGACATTTCTTCACTGGAGGATCTGTGTTAAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726233 45 -   2996164 TCTAGATATTGCAGACATTTCTTCACTGGAGGATCTGTGTTAAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     476019 45 +    766320 TCTAGATATTGCAGACATTTCTTCACTGGAGGATCTGTGTTAAGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28933733 45 -  71996105 TCCAGATATTGCAGACATTTCTTCACTGGAGGATCTGTGTTAAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     109952 45 +    290775 TCTAGATATTGCAGACATTTCTTCACTGGAGGATCTGTGTTAAGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2557849 45 -   3067355 TCTAGATATTGCAGACATTTCTTCACTGGAGGATCTGTGTTAAGC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           156991 45 -    242197 TCTAGATATTGCAGACATTTCTTCACTGGAGGATCTGTGTTAAGT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     158962 45 -   1771730 TCTAGATATTGCAGACATTTCTTCACTGGAGGATCTGTGGTAAGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222225 45 -    457564 TCTAGATATTGAAGACATTTCTTCACTGGAGGATCTGTGTTAAGT
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57792626 44 -  94987271 CCTAGATATTCCATATTCTTCTTCAGTTTTGTCT-TGTATTGGAC
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     512094 48 +    730504 I
e otoGar3.GL873550            37015 684 +  18854210 I

a score=589122.000000
s hg38.chr6_GL000254v2_alt   824618 58 +   4827813 ATTGCCTTACTTCCAGGTTCTCTCCA-TAGTGCATATTTTCTTATATAATGTAATGTGT
s panTro5.chr6             29787458 58 + 175400573 ATTGCCTTAATTCCAGGTTCTCGCCG-TAGTGCATATTTTCTTATATAATGTAATGTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30022103 58 + 173848474 ATTGCCTTAATTCCAGGTTCTCGCCG-TAGTGCATATTTTCTTATATAATGTAATGTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5825480 58 +   6154872 ATTGCCTTAATTCCAGGTTCTCGCAG-TAGTGCATATTTTCTTATATAATGTAATGTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74551668 58 + 122973662 ATTGCCTTAATTCCAGGTTCTCTCCA-TAGTGCATATTTTCTTATATAATGTAATGTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30016216 58 + 172585720 ATTGCCTTAATTCCAGGTTCTCTCCA-TAGTGCATACTTTCTTATATAATGTAATGTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29680114 58 - 170955103 ATTGCCTTAATTCCAGGTTCTCTCCA-TAGTGCATACTTTCTTATATAATGTAATGTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726278 58 -   2996164 ATTGCCTTAATTCCAGGTTCTCTCCA-TAGTGCATACTTTCTTATATAATGTAATGTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     476064 58 +    766320 ATTGCCTTAATTCCAGGTTCTTTCCA-TAGTGCATATTTTCTTATATAATGTAATGTGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28933778 58 -  71996105 ATTGCCTTAATTCCAGGTTCTCTCCA-TAGCGCATATTTTCTTATATAATGTAATGTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     109997 58 +    290775 ATTGCCTTAATTCCAGGTTCTTTCCA-TAGTGCATATTTTCTTATATAATGTAATGTGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2557894 58 -   3067355 ATTGCCTTAATTCCAGGTTCTCTCCA-TAGTGCATATTTTCTTATATAATATAATGTGT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           157036 58 -    242197 GTTGCCTTAATTCCAGGCTCTCTCCA-TAGTGCATACTTTCTTATATAAAGTAATGTGT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     159007 49 -   1771730 ATTG---------CAGGTTCTCTCCA-TAGTGCATACTTTCTTATATAAAATAATGTGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222270 58 -    457564 GTTGCCTTAATTCCAGGTTCTCTCCA-TAGTGCATATTTTCTTATATAAAGTAATGTGT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     512142 58 +    730504 ATTGCCCTCCTTGCAGGTTCTCTTTA-TAGTGCATATCTTCTTATGTAAGGTAATGTAT
i proCoq1.NW_012152574v1   I 48 C 0
s mm10.chr17               57792670 56 -  94987271 ATTGCCCTAATTGCACATTCTTTACATTGGAGCATAA---CCTGTTTAAGGTAATGTGT
i mm10.chr17               C 0 C 0
e otoGar3.GL873550            37015 684 +  18854210 I

a score=794421.000000
s hg38.chr6_GL000254v2_alt   824676 72 +   4827813 ----TAGATCATTAACAACTT---CAGATGAATGAGTTTTGTGAAGCTCTCCTTTG----------------------------AGAGGAGAGGGAAGATTAAGTTT
s panTro5.chr6             29787516 72 + 175400573 ----TAGATCATTAACAACTT---CAGATGAATGAGTTTTGTGAAGCTCTCCTTTG----------------------------AGAGAAGAGGGAAGATTAAGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30022161 72 + 173848474 ----TAGATCATTAACAACTT---CAGATGAATGAGTTTTGTGAAGCTCTCCTTTG----------------------------AGAGAAGAGGGAAGATTAAGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5825538 72 +   6154872 ----TAGATCATTAACAACTT---CAGATGAATGAGTTTTGTGAAGCTCTCCTTTG----------------------------AGAGGAGAGGGAAGATTAAGTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74551726 75 + 122973662 ----TAGATCATTAACAACTTCACCAGATAAATGAGTTTTGTGAAGCTCTCCTTTG----------------------------AGAGGAGAGGGAAGATTAAGTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30016274 72 + 172585720 ----TAGATCATTAACAACTT---CAGATAAATGAGTTTTGTGAAGCTCTCCTTTG----------------------------AGAGGAAAGAGAAGATTAAGTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29680172 72 - 170955103 ----TAGATCATTAACAACTT---CAGATAAATGAGTTTTGTGAAGCTCTCCTTTG----------------------------AGAGGAAAGAGAAGATTAAGTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726336 72 -   2996164 ----TAGATCATTAACAACTT---CAGATAAATGAGTTTTGTGAAGCTCTCCTTTG----------------------------AGAGGAAAGAGAAGATTAAGTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     476122 72 +    766320 ----TAGATCATTAACAACTT---CAGATAAATGAGTTTTGTGAAGCTCTCCTTTG----------------------------AGAGAAAAGAGAAGATTAAGTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28933836 72 -  71996105 ----TAGATCATTAACAACTT---CAGATAAATGAGTTTTGTGAAGCTCTCCTTTG----------------------------AGAGAAAAGAGAAGATTAAGTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     110055 72 +    290775 ----TAGATCATTAACAACTT---CAGATAAATGAGTTTTGTGAAGCTCTCCTTTG----------------------------AGAGAAAAGAGAAGATTAAGTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2557952 72 -   3067355 ----TAGATCATTAACAACTT---CAGATAAATGAGTTTTGTGAAGCTGTCCTTTG----------------------------AGAGAAAAGACAAGATTAAGTTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           157094 98 -    242197 ----TTGATCATTAACAACTT---CAGATAAA--AGTTTTGTGAAGCTCTCCTTTGAGAGAAGCTCTCCTTCTCTCTCCCTCAAAGGAGAGGGAAAAGATTAAGTTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     159056 72 -   1771730 ----TCGATCATTAACAACTT---CAGATAAATGAGTTTTGTGAAGCTCTCCTTTG----------------------------AGGGGAGAGAAAATATTAAGTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222328 66 -    457564 ----TCGATCATTAACTACTT---TAGATAAATGAGTTTTGTGAAGCTATCCTTTG----------------------------AGGGGAGAGAAAAGA------TT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     512200 72 +    730504 ----TAGGTCATTAACAACTT---AAGATAAATGAGTTTTGTGATGCTCTCCTTTG----------------------------AGAGGAGAGGGAAGCTTCAGGTT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            37699 71 +  18854210 ----TAGGTCATTAACAACTT---AAGATAAA-GAGTTTTGTGAAGCTCTCCTTTG----------------------------AGAGGACAGGGAAGCTTCAGATT
i otoGar3.GL873550         I 684 I 179
s mm10.chr17               57792726 74 -  94987271 TAGTTATGTCACCAATAAC-----AAGAAAAACAAGTTTTATGAAGTTTTCCTTTG----------------------------AAAAGAGAGAGACGCTTAAGGCT
i mm10.chr17               C 0 C 0

a score=1863749.000000
s hg38.chr6_GL000254v2_alt   824748 183 +   4827813 AAGAACCTTAAAAAATGTTACCATAATTTCAAATCTCACCAGCCCTGTGGAACACAAAGCTCACCCCCAC-T-----------------------------------------------------------------------------------------TTTTCTTCTACCA----------------TTTATCCCTA-------------------AGAGTAGCTAGTCC--AATGTTTTATT---------------------------------TAAAAAAGAACAC--------------AGAAGCCAGATAACCAGCTTCTCTTCAGACAATCCCTCTTCCCATTCTGCA
s panTro5.chr6             29787588 183 + 175400573 AAGAACCCTAAAAAATGTTACCATAATTTCAAATCTCACCAGCCCTGTGGAACACAAAGCTCACCCCCAC-T-----------------------------------------------------------------------------------------TTTTCTTCTACCA----------------TTTATCCCTA-------------------AGAGTAGCTAGTCC--AATGTTTTATT---------------------------------TAAAAAAGAACAC--------------AGAAGCCAGATAACCAGCTTCTCTTCAGACAGTCCCTCTTCCCATTCTGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30022233 183 + 173848474 AAGAACCCTAAAAAATGTTACCATAATTTCAAATCTCACCAGCCCTGTGGAACACAAAGCTCACCCCCAC-T-----------------------------------------------------------------------------------------TTTTCTTCTACCA----------------TTTATCCCTA-------------------AGAGTAGCTAGTCC--AATGTTTTATT---------------------------------TAAAAAAGAACAC--------------AGAAGCCAGATAACCAGCTTCTCTTCAGACAGTCCCTCTTCCCATTCTGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5825610 183 +   6154872 AAGAACCCTAAAAAAGGTTACCATAATTTCAAATCTCACCAGCCCTGTGGAACACAAAGCTCACCCCCAC-T-----------------------------------------------------------------------------------------TTTTCTTCTACCA----------------TTTATCCCTA-------------------AGAGTAGCTAGTCC--AATGTTTTATT---------------------------------TAAAAAAGAACAC--------------AGAAGCCAGATAACCAGCTTCTCTTCAGACAATCCCTCTTCCCATTCTGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74551801 183 + 122973662 AAGAACCCTAAAACATGTTACCATCATTTCAAATCTCACCAGCCCTGTGGAACACAAAGCTCACCCCCAC-T-----------------------------------------------------------------------------------------TTTTCTTCTACCA----------------TTTATCCCTA-------------------AGAGTAGCTAGTCC--AATGTTTTATT---------------------------------TAAAAAAGAACAC--------------AGAAGCCAGATAACCACCTTCTCTTCAGACAGTCCCTCTTCCCATTCTGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30016346 184 + 172585720 AAGAACCCTAAAAAATGTTTCCATAATTTCAAATCTCACCAGCCCTGTGGAACACAAAGCTCACCCCCACTT-----------------------------------------------------------------------------------------TTTTTTTCTACCA----------------TTTATCCCTA-------------------AGAGTAGCTAGTCC--AATGTTTGATT---------------------------------AAAAAAAGAACAC--------------AGAAGCCAGATAACCAGCTTCTCTTCAGACAATCCCTCTTCCCATTCTGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29680244 184 - 170955103 AAGAACCCTAAAAAATGTTTCCATAATTTCAAATCTCACCAGCCCTGTGGAACACAAAGCTCACCCCCACTT-----------------------------------------------------------------------------------------TTTTTTTCTACCA----------------TTTATCCCTA-------------------AGAGTAGCTAGTCC--AATGTTTGATT---------------------------------AAAAAAAGAACAC--------------AGAAGCCAGATAACCAGCTTCTCTTCAGACAATCCCTCTTCCCATTCTGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726408 184 -   2996164 AAGAACCCTAAAAAATGTTTCCATAATTTCAAATCTCACCAGCCCTGTGGAACACAAAGCTCACCCCCACTT-----------------------------------------------------------------------------------------TTTTTTTCTACCA----------------TTTATCCCTA-------------------AGAGTAGCTAGTCC--AATGTTTGATT---------------------------------AAAAAAAGAACAC--------------AGAAGCCAGATAACCAGCTTCTCTTCAGACAATCCCTCTTCCCATTCTGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     476194 183 +    766320 AAGAACCCTAAAAAATGTTTCCGTAATTTCAAATCTCACCAGCCCTGTGGAACACAAAGCTCACCCCCAC-T-----------------------------------------------------------------------------------------TTTTTTTCTACCA----------------TTTATCCCTA-------------------AGAGTAGCTAGTCC--AATGTTTGATT---------------------------------TAAAAAAGAACAC--------------AGAAGCCAGATAACCAGCTTCTCTTCAGACAATCCCTATTCTCATTCTGCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28933908 183 -  71996105 AACAACCCTAAAAAATGTTTCCGTAATTTCAAATCTCACCAGCCTTGTGGAACACAAAGCTCACCCCCAC-T-----------------------------------------------------------------------------------------TTTTTTTCTACCA----------------TTTATCCCTA-------------------AGAGTAGCTAGTCC--AATGTTTGATT---------------------------------TAAAAAAGAACAC--------------AGAAGCCGGATAACCAGCTTCTCTTCAGACAATCCCTCTTCCCATTCTGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     110127 183 +    290775 AAGAACCCTAAAAAATGTTTCCGTAATTTCAAATCTCACCAGCCCTGTGGAACACAAAGCTCACCCCCAC-T-----------------------------------------------------------------------------------------TTTTTTTCTACCA----------------TTTATCCCTA-------------------AGAGTAGCTAGTCC--AATGTTTGATT---------------------------------TAAAAAAGAACAC--------------AGAAGCCAGATAACCAGCTTCTCTTCAGACAATCCCTATTCTCATTCTGCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2558024 184 -   3067355 AAGAACCCTAAAAAATGTTTCCATAATTTCAAATCTCACCAGCCCTGTGGAACACAAAACTCACCCCCACTT-----------------------------------------------------------------------------------------TTTTTTTCTACCA----------------TTTATCCCTA-------------------AGAGTAGCTAGTCC--AATGTTTGATT---------------------------------TAAAAAAGAACAC--------------AGAAGCCAGATAACCAGCTTCTCTTCAGACAATCCCTCTTCCCATTCTGCA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           157192 182 -    242197 AAGGACCCTAAAAAATGTTTCCATAATTTTAAATCTCACCAGCCCTGTGGAACACAAGGTTCACCCTCAC-C-----------------------------------------------------------------------------------------TTTTTTCCTACCA----------------TTGATCCCAA-------------------AGAGTAACTATTGC--AAGGTCTGATT---------------------------------TAAAAAAGAACAC--------------AGAAGCCAGATAACCAGTTCCTTTTCAGATAATCACCCTTCCCA-TATGCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     159128 182 -   1771730 AAGGACCCTAAAAAATGTTTCCACAATTTTAAATCTCACCAGTCCTGTGGAACACAAAGCTCACCCTCAT-A-----------------------------------------------------------------------------------------TTTTTTCCTACCG----------------TTGATCCCAA-------------------AGAGTAACTAGTGC--AAGGTCCGATT---------------------------------GAAAAAAGAACAC--------------AGAAGCCAGATAACCAGCTTCTCTTCAGACAATCACCTTTCCCA-TACACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222394 182 -    457564 AAGAACTCTAAAAAATGTTTCCATAATTTTAAATCTCACCAGCCCTGTTGAACACAAAGCTCATCCTCAC-T-----------------------------------------------------------------------------------------TTTTTTCCTATCG----------------TTGATTCCAA-------------------AGAGTAACTAGTGC--AAGGTCTGATT---------------------------------TCAAAAAGAACAC--------------AGAAGCCAGATAACCAGCTTCTCTTCAGACAATCACCCTTCCCA-TATGCA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     512272 177 +    730504 AAGAACCCTGGAA-ATGTTTCCATTCGTTCACATCTCACCAGCCCTGTTGGGCACAAAGCTCACCCCCAC-----------------------------------------------------------------------------------------------TTCCTACCA----------------TTTATCCCAA-------------------ACAGCAGCCAGTCC--AAGGTCTGATT---------------------------------CAAAAGAGAACTC--------------AGGAGCCACGTAACCAACTTCTCTTCAGACAACCCTCCTTCCCATTCTGCA
i proCoq1.NW_012152574v1   C 0 I 42
s otoGar3.GL873550            37949 177 +  18854210 AAGAACCCTGAAA-ATATTTCCATCATTTCAAGTCTCACCAACCCTGTTGTGAACAAAGCTCACCCGCAC-----------------------------------------------------------------------------------------------TTCCTTCCA----------------TTTATTGCAA-------------------ACAACAGCTAGTCC--AAGATCTGATT---------------------------------CAAAAGAGGACTC--------------AGGAGCCAAATAACTGATTTCCTTTCAAACAACCCTCCTTCCCATTTTGCA
i otoGar3.GL873550         I 179 C 0
s mm10.chr17               57792800 353 -  94987271 GAGAACTCTGTAAGTTATTTTCCTAATTTCACATCTTGCCAGCCTCATGAAG--CAAAGTGTCCTACCAT-TTCTCCTAAGTGGGGATGGCAAAAATGGCTCAGCTGTTTAAATAAATAACAAATAAGTAaatcaatcaatcaatcagtcagtcaataaaatctcttgctgccaagcctcacctttaagcttgatccctagaacctatgtggtgaagagagagaactgactcctgaaggttatcttctggctctgacccaccatatacatgcacacatataataaataaaatattttaaaagtttaataaGTCAAATGACCAACCTCTCTTCAGAGTA-CCCTCTTCCTATTGTGCA
i mm10.chr17               C 0 C 0

a score=1057220.000000
s hg38.chr6_GL000254v2_alt   824931 114 +   4827813 AATGTCAATGCCAGCCTCTTCTCCTGAAGGATGCCTG-CCCAGCCCCC-CAGAGCCCTGAGTACTGCCCAGCCCCCGTTTCTAAGA-TCTCTCCCCA-----ACTCTTGAAAGTGCTTTTCC
s panTro5.chr6             29787771 114 + 175400573 AATGTCAATGCCAGCCTCTTCTCCTGAAGGATGCCTG-CCCAGCCACC-CAGAGCCCTGAGTACTGCCCAGCCCCCGTTTCTAAGA-TCTCTCCCCA-----ACTCTTGAAAGTGCTTTTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30022416 114 + 173848474 AATGTCAATGCCAGCCTCTTCTCCTGAAGGATGCCTG-CCCAGCCACC-CAGAGCCCTGAGTACTGCCCAGCCCCCGTTTCTAAGA-TCTCTCCCCA-----ACTCTTGAAAGTGCTTTTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5825793 115 +   6154872 AATGTCAATGCCAGCCTCTTCTCCTGAAGGATGCCTGCCCCAGCCACC-CGGAGCCCTGAGTACTGCCCAGCCCCCGTTTCTAAGA-TCTCTCCCCA-----ACTCTTGAAAGTGCTTTTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74551984 114 + 122973662 AATGTCAATGCCAGCCTCTTCTCCTTAAGGATGCCTG-CCCAGCCACC-CAGAGCCCTGAGTGCTGCCCATCCCCCATTTCTAAGA-TCTCTCCCCA-----ACTCTTGAAAGTGCTTTTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30016530 114 + 172585720 AATGTCAATGCCAGCCTCTTCCCCTTAAGGATGCCTG-CCCAGCCACC-CAGAGCCCTGAGTACTGTCCATCCCCCGTTTCTAAGA-TCTCTCCCCA-----ACTCTTGAAAGTGCTTTTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29680428 114 - 170955103 AATGTCAATGCCAGCCTCTTCCCCTTAAGGATGCCTG-CCCAGCCACC-CAGAGCCCTGAGTACTGTCCATCCCCCGTTTCTAAGA-TCTCTCCCCA-----ACTCTTGAAAGTGCTTTTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726592 114 -   2996164 AATGTCAATGCCAGCCTCTTTCCCTTAAGGATGCCTG-CCCAGCCACC-CAGAGCCCTGAGTACTGTCCATCCCCCGTTTCTAAGA-TCTCTCCCCA-----ACTCTTGAAAGTGCTTTTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     476377 114 +    766320 AATGTCAATGCCAGCCTCTTCCCCTTAAGGATGCCTG-CCCAGCCATC-CAGAGCCCTAAGTATTGTCCATCCCCCGTTTCTAAGA-TCTCTCCCCA-----TCTCTTGAAAGTGCTTTTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28934091 112 -  71996105 AATGTCAATGCCAGCCTCTTCCCCTTAAGGTTGCCTG-CCCAGCCACC-CAGAGCCCTGAGTACTGTCCAT--CCCGTTTCTAAGA-TCTCTCCCCA-----ACTCTTGAAAGTGCTTTTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     110310 114 +    290775 AATGTCAATGCCAGCCTCTTCCCCTTAAGGATGCCTG-CCCAGCCACC-CAGAGCCCTAAGTATTGTCCATCCCCCGTTTCTAAGA-TCTCTCCCCA-----TCTCTTGAAAGTGCTTTTCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2558208 114 -   3067355 AATGTCAATGCCAGCCTCTTCCCCTTAAGGATGCCTG-CCCAGCCACC-CAGAGCCCTGAGTACTGTCCATCTCCTGTTTCTAAGA-TCTCTCCCCA-----ACTCTTGAAAGGACTTTTCC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           157374 114 -    242197 CATGTCAATGCCAGCCTCTTCCACTTAAGGATGCCTG-CCCAGCCACC-CAGAGCCCTGAGCACTGTCCATCCTCTGTTTCTAAGA-TCTCTCCCCA-----ACTCTTGAAAGTGCTTTTCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     159310 114 -   1771730 CATGTCAATGCCAGCCTCTTCCACTAAAGGATGCCTG-CCCAGCCACC-CAGAGCCCTGAGCACTGTCCATCCTCTGTTTCTAAGA-TCTCTCCCAA-----ACTCTTGGAAGTGCTTTTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222576 112 -    457564 CATGTCAATGCCAGCCTCTTCTGCTTAAGGATGCCTG-CCCAGCCACC-CAGAGCCCTGAGCACTGTCCATC--CTGTTTCTAAGA-TCTCTCCCCA-----ACTCTTGAAAGTGTTTTTCC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            38126  92 +  18854210 GTTACCAATGCCTGTCTGCTTGTCTC-------CCTG-CCT-------------CCCTGAGCATGGTTCTTCATTCATCCCTGAAA-TGTCTTCCCACTTCCATCCCTGAGGTT--------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57793153 116 -  94987271 GTTATCAATGTCTGCCTTTTCTCCTAAATGTTTCTCA-CCCAACTGCCTCACCTTCTAGACCACTGTCCCCTCCCAAGTTGTGGAACTGTACCCCCA-----ATACATGGAAATACTTTTCC
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     512449  42 +    730504 I

a score=813434.000000
s hg38.chr6_GL000254v2_alt   825045 67 +   4827813 TTTCCCCATCCCCTTTATCAAATCCCAACTTACACAGAGGCAGGAAGCATTGGGAGCCATCTCTGCA
s panTro5.chr6             29787885 67 + 175400573 TTTCCCCATCCCCTTTATCAAATCCCAACTTACACAGAGGCAGGAAGCATTGGGAGCCATCTCTGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30022530 67 + 173848474 TTTCCCCATCCCCTTTATCAAATCCCAACTTACACAGAGGCAGGAAGCATTGGGAGCCATCTCTGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5825908 67 +   6154872 TTTCCCCATCCCCTTTATCAAATCCCAACTTACACAGAGGCAGGAAGCATTGGGAGCCATCTCTGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74552098 67 + 122973662 TTTCCCCATCCCCTTTATCAAATCCCAACTTACACAGAAGCAGGAAGCATTGGGAGCCATATCTGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30016644 67 + 172585720 TTTCCCCATCCCCTTTATCAAATCCCAACTTACAGAGAGGCAGGAAGCATTGGGAGCCATCTTTGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29680542 67 - 170955103 TTTCCCCATCCCCTTTATCAAATCCCAACTTACAGAGAGGCAGGAAGCATTGGGAGCCATCTTTGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726706 67 -   2996164 TTTCCCCATCCCCTTTATCAAATCCCAACTTACAGAGAGGCAGGAAGCATTGGGAGCCATCTTTGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     476491 67 +    766320 TTTCCCCATCCCCTTTATCAAATCCCAACTTACAGAGAGGCAGGAAGCATTGCGAGCCATCTTTGCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28934203 67 -  71996105 TTTCCCCATCCCCTTTATCAAATCCCAACTTACAGTGAGGCAGGAAGCATTGGGAGCCATCTTTGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     110424 67 +    290775 TTTCCCCATCCCCTTTATCAAATCCCAACTTACAGAGAGGCAGGAAGCATTGGGAGCCATCTTTGCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2558322 67 -   3067355 TTTCCCCATCCCCTTTATCAAATCCCAACTTACACAGAGGCAGGAAGCATTTGGAGCCATCTCTGCA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           157488 67 -    242197 TTTCCCCATCCGTTTTATCAAATCCCAGCTTACACAGAGGCTGGAAGCATTGCGAGCCATCTCTGCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     159424 67 -   1771730 TTTCCCCGTCCCTTTTATCAAACCCCAGCTTACACAGAGGCTGGAAGCATTGGGAGCCATCTCTGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222688 67 -    457564 TTTTCCCATCCCTTTTATCAAATCCCAGCTTACAAAGAGGCTGGAAGCATTGGGAGCCATCTCTGCA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     512491 67 +    730504 TTTCCCCATCTCCTTTATCAAATCCCAACTTACACAGAGGCAGGAAGCATTGGGAGCCATCTCTGCA
i proCoq1.NW_012152574v1   I 42 I 60
s otoGar3.GL873550            38218 66 +  18854210 TTTCCCCATC-CCTTTGTCAAATCCAGACTTACACAGAGGCAGGAAGCAATGGGAGCCATCTCTGCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57793269 58 -  94987271 --TTCCCATT-CGTTTACCAAACCCCAACTTACACAGGTGCGGACAG------AAGCCATGTCTGTA
i mm10.chr17               C 0 C 0

a score=508303.000000
s hg38.chr6_GL000254v2_alt   825112 58 +   4827813 GACAAGGGGCCAGAAACCAGAGAC--AGAAAAAGGACTTTGCATGCAGCT--TATATACCAG
s panTro5.chr6             29787952 58 + 175400573 GACAAGGGGCCAGAAACCAGAGAC--AGAAAAAGGACTTTGCATGCAGCT--TATATACCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30022597 58 + 173848474 GACAAGGGGCCAGAAACCAGAGAC--AGAAAAAGGACTTTGCATGCAGCT--TATATACCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5825975 58 +   6154872 GACAAGGGGCCAGAAACCAGAGAC--AGAAAAAGGACTTTGCGTGCAGCT--TATATACCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74552165 58 + 122973662 GTCAAGGGGCCAGAAACCAGAGAC--AGCAAAAGGACTTTGCATGCAGCT--TATATACCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30016711 58 + 172585720 GTCAAGGGGCCAGAAACCAGAGAC--AGAAAAAGGATTTTAACTCCAGCT--TATATACCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29680609 58 - 170955103 GTCAAGGGGCCAGAAACCAGAGAC--AGAAAAAGGATTTTGCATCCAGCT--TATATACCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726773 58 -   2996164 GTCAAGGGGCCAGAAACCAGAGAC--AGAAAAAGGATTTTAACTCCAGCT--TATATACCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     476558 58 +    766320 GTCAAGGGGCCAGAAACCAGAGAC--AGAAAAAGGATTTTGCATCCAGCT--TATATACCAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28934270 58 -  71996105 GTCAAGGGGCCAGAAACCAGAGAC--AGAAAAAGGATTTTGCATCCAGCT--TATATACCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     110491 58 +    290775 GTCAAGGGGCCAGAAACCAGAGAC--AGAAAAAGGATTTTGCATCCAGCT--TATATACCAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2558389 58 -   3067355 GTCAAGCGGCCAGAAACCAGAGAC--AGAAAAAGGATTTTGCACCCAGCT--TATATACCAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           157555 58 -    242197 GTCAAGGGGGCAGAAAT--GAGAC--AGAAAAAGGAATTTGCATCCAGCTTATATATACTAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     159491 58 -   1771730 GTCAAAGAGGCAGAAAT--GAGAC--AGAAAAAGGAATTTGCATCCAGCTTATATATACTAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222755 58 -    457564 GTCAAGGGGGCAGAAAC--GAGAC--TGAAAAAGGAATTTGCATCCAGTTTATATATACCAG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            38284 60 +  18854210 ATCAAGGGAGCAGAAACCAGAGACTGAGGAAAATGACGATGCATCCACCT--TATATGCAAG
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57793327 48 -  94987271 --------GTCAGAGGCTGAATA---AGAAAAGAGTCCTTGTGTCT-GCT--TATATGTGAG
i mm10.chr17               C 0 I 1
e proCoq1.NW_012152574v1     512558 60 +    730504 I

a score=161987.000000
s hg38.chr6_GL000254v2_alt   825170 22 +   4827813 A-GTTGAGTTGGAAATCCCCTGC
s panTro5.chr6             29788010 22 + 175400573 A-GTTGAGCTGGAAATCCCCTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30022655 22 + 173848474 A-GTTGAGCTGGAAATCCCCTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5826033 22 +   6154872 A-GTTGAGTTGGAAATCCCCTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74552223 22 + 122973662 C-GTTGAGTTGGAAATCCCCTGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30016769 21 + 172585720 C-GTTGAATTGGAAATCCCCT-C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29680667 21 - 170955103 C-GTTGAATTGGAAATCCCCT-C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726831 21 -   2996164 C-GTTGAATTGGAAATCCCCT-C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     476616 21 +    766320 C-GTTGAATTGGAAATCCCCT-C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28934328 21 -  71996105 C-GTTGAATTGGAAATCCCCT-C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     110549 21 +    290775 C-GTTGAATTGGAAATCCCCT-C
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2558447 22 -   3067355 C-ATTGAATTGGAAATCCCCTGC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           157613 23 -    242197 CAGATGAGTTGGAAATCCCCTGC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     159549 23 -   1771730 CAGATGAGTTGGAAATCCCCTAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222813 23 -    457564 CAGATGAGCTGGAAATCACCTGC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     512618 22 +    730504 -AGTTGAGTTGGAAATCCCCTGC
i proCoq1.NW_012152574v1   I 60 I 72
s otoGar3.GL873550            38345 19 +  18854210 -ACTGGTGGTGGAAATCCCC---
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57793376 18 -  94987271 -AGCTGGGTTGGAAATCCC----
i mm10.chr17               I 1 C 0

a score=854000.000000
s hg38.chr6_GL000254v2_alt   825192 84 +   4827813 CTGGATTGCTGTGTTTGTCCAGCTTTGCTGTGCTCTTTGTTCTTGCATGCTCCCATGAA-TTTTCTTTCACTTTTGCTGGGCAGG
s panTro5.chr6             29788032 84 + 175400573 CTGGATTGCTGTGTTTGTCCAGCTTTGCTGTGCCCTTTGTTCTTGCATGCTCCCATGAA-TTTTGTTTCACTTTTGCTGGGCAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30022677 84 + 173848474 CTGGATTGCTGTGTTTGTCCAGCTTTGCTGTGCCCTTTGTTCTTGCATGCTCCCATGAA-TTTTGTTTCACTTTTGCTGGGCAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5826055 84 +   6154872 CTGGATTGCTGTGTTTGTCCAGCTTTGCTGTGCCCTTTGTTCTTGCATGCTCCCATGAA-TTTTCTTTCACTTTTGCTGGGCAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74552245 84 + 122973662 CTGGATTGCTGTGTTTGTCCAGCTTTGCTGTGCCCTTTGTTCTTGCATGCTTTCATGAA-TTTTCTTTCACTTTTGCTGGGCAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30016790 84 + 172585720 CTGGATTGCTGTGTTTGTCCAGCTTTGCTGTGCCCTTTGTTCTTGCATGCTCCCATGAA-TTTTCTTTCACTTTTGCTGGGCAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29680688 84 - 170955103 CTGGATTGCTGTGTTTGTCCAGCTTTGCTGTGCCCTTTGTTCTTGCATGCTCCCATGAA-TTTTCTTTCACTTTTGCTGGGCAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726852 84 -   2996164 CTGGATTGCTGTGTTTGTCCAGCTTTGCTGTGCCCTTTGTTCTTGCATGCTCCCATGAA-TTTTCTTTCACTTTTGCTGGGCAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     476637 84 +    766320 CTGGATTGCTGTGTTTGTCCAGCTTTGCTGTGCCCTTTGTTCTTGCATGCTCCCAGGAA-TTTTCTTTCACTTTTGCTGGGCAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28934349 84 -  71996105 CTGGATTGCTGTGTTTGTCCAGCTTTGCTGTGCCCTTTGTTCTTGCATGCTCCCATGAA-TTTTCTTTCACTTTTGCTGGGCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     110570 84 +    290775 CTGGATTGCTGTGTTTGTCCAGCTTTGCTGTGCCCTTTGTTCTTGCATGCTCCCAGGAA-TTTTCTTTCACTTTTGCTGGGCAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2558469 84 -   3067355 CTGGATTGCTGTGTTTGTCCAGCTTTGCTGTGCCCTTTGTTCTTGCATGCTCCTGTGAA-TTTTCTTTCACTTTTGCTGGGCAGG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           157636 84 -    242197 CTGGATTGCTGTGTTTGTTCAGCTTTGCTGTGCCCTTTGTTCTTGCAGGTTCCCATGAA-TTTTCTTTCACTCTTGCTGGACAGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     159572 84 -   1771730 CTGGATTGCTGTGTTTGTCCAGCTTTGCTGTGTGCTTTGTTCTTGCAGGTTCCCATGAA-TTTTCTTTCACTCTTGCTGGACAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222836 84 -    457564 CTGGATTGCTGTGTTTGTCCAGCTTTGCTGTGCTCTTTGTTCTTGCAGGTTCCCATAAA-TTTTCTTTTGCTTTTGCTAGACAGG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            38364 74 +  18854210 ------TGCTGTAGTTGTCCAACTTTAGTGTGCCCCTTGATCTTG--TGTTCTCATGAGTTTTTCTTTCACTTTCTGAGGGA---
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57793394 72 -  94987271 CAAGTTCAATGTG-TTGTCCAGTTTAGCAGCAACCTTTGTTCTCA-----------ATA-ATTCCTTTCACTTTTGCTGGGGTAG
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     512640 72 +    730504 I

a score=482228.000000
s hg38.chr6_GL000254v2_alt   825276 46 +   4827813 AGTTAATAGACAAAGAATGCTTTCTGATCACATACTTCTCTCCTCA
s panTro5.chr6             29788116 46 + 175400573 AGTTAATAGACAAAGAATGCTTTCTGATCACGTACTTCTCCCCTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30022761 46 + 173848474 AGTTAATAGACAAAGAATGCTTTCTGATCACGTACTTCTCCCCTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5826139 46 +   6154872 AGTTAATAGACAAAGAATGCTTTCTGATCACGTACTTCTCCCCTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74552329 46 + 122973662 AGTTAATAGACAAAGAATTCTTTCTGATCACGTACTTCTCCCCTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30016874 46 + 172585720 AGTTAATAAACAAAGAATGCTTTCTGATTACGTACTTCTCCCCTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29680772 46 - 170955103 AGTTAATAAACAAAGAATGCTTTCTGATTACGTACTTCTCCCCTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726936 46 -   2996164 AGTTAATAAACAAAGAATGCTTTCTGATTACGTACTTCTCCCCTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     476721 46 +    766320 AGTTAATAAACAAAGAATGCTTTCTGATTACGTACTTCTCCCCTCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28934433 46 -  71996105 AGTTAATAAACAAAGAATGCTTTCTGATTACGTACTTCTCCCCTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     110654 46 +    290775 AGTTAATAAACAAAGAATGCTTTCTGATTATGTACTTCTCCCCTCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2558553 46 -   3067355 AGTTAATAAACAAAGAATGCTTTCTGATTACGCACTTCTCCCCTCA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           157720 42 -    242197 AGTTAAT----ATAGAATGCTTTCTGATTGCATACTTCTCCCCTCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     159656 42 -   1771730 AGTTAAT----AAAGAATGCTTTCTGATTGCATACTTCTCCCCTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222920 42 -    457564 AGTTAAC----AAAGAATGCTTTCTGACTGCATACTTCTCCCCTCA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     512712 46 +    730504 AGTTAACAAACAAAGAATACTTTCTGATCACACACTTCTCCCCTCA
i proCoq1.NW_012152574v1   I 72 I 2113
s otoGar3.GL873550            38438 37 +  18854210 ----AGCTAACAAAGAA-----TCTGATCACACCCATCTCCCCTCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57793466 42 -  94987271 AGTTCAT----AATGGACACTGTTTGTACACAGATTTCTCCCCTTA
i mm10.chr17               C 0 C 0

a score=549731.000000
s hg38.chr6_GL000254v2_alt   825322 61 +   4827813 AGCAATCTATTTGCAAACCTCATTCCAAACATGGGATGGTCTTTCTGTGTTGAAAACTTTT
s panTro5.chr6             29788162 61 + 175400573 AGCAATCTATTTGCAAACCTCATTCCAAACATGGGATGGTCTTTCTGTGTTGAAAACTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30022807 61 + 173848474 AGCAATCTATTTGCAAACCTCATTCCAAACATGGGATGGTCTTTCTGTGTTGAAAACTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5826185 61 +   6154872 AGCAATCTATTTGCAAACCTCATTCCAAACATGGGATGGTCTTTCTGTGTTGAAAACTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74552375 61 + 122973662 AGCAATCTATTTGCAAACCTCATTCCAAACATGGGATGGTCTTTCTGTGTTGAAAACTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30016920 59 + 172585720 GGCAATCTATTTGCAATCCTCATTCCAAAA--GGGATGGTCTTTCTGTGTTGAAAACTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29680818 59 - 170955103 GGCAATCTATTTGCAATCCTCATTCCAAAA--GGGATGGTCTTTCTGTGTTGAAAACTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2726982 59 -   2996164 GGCAATCTATTTGCAATCCTCATTCCAAAA--GGGATGGTCTTTCTGTGTTGAAAACTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     476767 59 +    766320 GGCAATCTATTTGCAATCCTCATTCCAAAC--GGGATGGTCTTTCTGTGTTGAAAACTTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28934479 59 -  71996105 GGCAATCTATTTGCAATCCTCATTCCAAAC--GGGATGGTCTTTCTGTGTTGAAAACTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     110700 59 +    290775 GGCAATCTATTTGCAATCCTCATTCCAAAC--GGGATGGTCTTTCTGTGTTGAAAACTTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2558599 61 -   3067355 GGCAATCTATTTGCAATCCTCATTCCAAACATGGGATGGTCTTTCTGTGTTGAAAATTTTT
i colAng1.NW_012115566v1   C 0 I 2035
s saiBol1.JH378357           157762 61 -    242197 GGCAACCTATTTGCACTCTTCATTCCAAACATGAGATGGTGCTTCTGAATTGAAAACTTTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     159698 61 -   1771730 GGCAACCTATTTGCACTCCTCATTCCAAACATGAGATGGTGCTTCTGAATTGAAAACTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     222962 61 -    457564 GGCAACCTATTTGCACTTCTCATTCCAAACATTAGTTGGTGCTTCTGAATTGAAAACTTTT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            38475 58 +  18854210 GCCAATCAACGTGCACTCCTCATTCCAAACCTCAGACAGTC---CTCTGTTGAGGATTTTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57793508 61 -  94987271 GCCAATCTATCTGTATTCCTAGTTCTGTGCATAGAATAGTCATTCTAAGATAGGAATTTTG
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     512758 2113 +    730504 I

a score=24000.000000
s hg38.chr6_GL000254v2_alt   825383 2 +   4827813 CC
s panTro5.chr6             29788223 2 + 175400573 CC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30022868 2 + 173848474 CC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5826246 2 +   6154872 CC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74552436 2 + 122973662 CC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30016979 2 + 172585720 CC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29680877 2 - 170955103 CC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2727041 2 -   2996164 CC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     476826 2 +    766320 CC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28934538 2 -  71996105 CC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     110759 2 +    290775 CC
i manLeu1.NW_012099233v1   C 0 C 0
s saiBol1.JH378357           157823 2 -    242197 CC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     159759 2 -   1771730 CC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     223023 2 -    457564 CC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            38533 2 +  18854210 CC
i otoGar3.GL873550         C 0 I 3152
s mm10.chr17               57793569 2 -  94987271 CC
i mm10.chr17               C 0 I 3882
e proCoq1.NW_012152574v1     512758 2113 +    730504 I
e colAng1.NW_012115566v1    2558660 2035 -   3067355 I

a score=20055.000000
s hg38.chr6_GL000254v2_alt   825385 2 +   4827813 CT
s panTro5.chr6             29788225 2 + 175400573 CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30022870 2 + 173848474 CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5826248 2 +   6154872 CT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74552438 2 + 122973662 CT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30016981 2 + 172585720 CT
i rheMac8.chr4             C 0 I 1784
s macFas5.chr4             29680879 2 - 170955103 CT
i macFas5.chr4             C 0 I 1784
s macNem1.NW_012011356v1    2727043 2 -   2996164 CT
i macNem1.NW_012011356v1   C 0 I 1768
s cerAty1.NW_012002711v1     476828 2 +    766320 CT
i cerAty1.NW_012002711v1   C 0 I 2044
s chlSab2.chr17            28934540 2 -  71996105 CT
i chlSab2.chr17            C 0 I 2039
s manLeu1.NW_012099233v1     110761 2 +    290775 CT
i manLeu1.NW_012099233v1   C 0 I 2044
s saiBol1.JH378357           157825 2 -    242197 CT
i saiBol1.JH378357         C 0 I 10186
s cebCap1.NW_016107755v1     159761 2 -   1771730 CT
i cebCap1.NW_016107755v1   C 0 I 2474
s aotNan1.NW_018509740v1     223025 2 -    457564 CT
i aotNan1.NW_018509740v1   C 0 I 9029
s mm10.chr17               57797453 2 -  94987271 CT
i mm10.chr17               I 3882 C 0
e proCoq1.NW_012152574v1     512758 2113 +    730504 I
e otoGar3.GL873550            38535 3152 +  18854210 I
e colAng1.NW_012115566v1    2558660 2035 -   3067355 I

a score=890690.000000
s hg38.chr6_GL000254v2_alt   825387 149 +   4827813 TTTCTCAGGAAAGATCTTTGTCTGTTGAAGCCACCTGGATCTATACCCACAGCCCAAACCTAAGCTGCAGatctctatgtctagctgtgtctgtgtctatgGGAATTCTCGTTCCTtgaattcccggcatatccttg---aacaccccaatc
s panTro5.chr6             29788227 152 + 175400573 TTTCTCAGGAAAGATCTTTGTCTGTTGAAGCCATCTGGATCTATACCCACAGCCCCAACCTAAGCTGCAGatctctatgtctagctgtgtctgtgtctatgGGAATTCTCGTTCCTtgaattcccggcatatccttgaacaacaccccaatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30022872 152 + 173848474 TTTCTCAGGAAAGATCTTTGTCTGTTGAAGCCACCTGGATCTATACCCACAGCCCCAACCTAAGCTGCAGatctctatgtctagctgtgtctgtgtctatgGGAATTCTCGTTCCTtgaattcccggcatatccttgaacaacaccccaatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5826250 149 +   6154872 TTTCTCAGGaaagatctttgtctgttgaagccacctggatctatacccacagcccaaacctaagctgcagatctctatgtctagctgTGTCTGTGTCTATGGGAATTCTCGTTCCTtgaattcccggcatatccttg---aacaccccaatc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74552440 149 + 122973662 TTTCTCAGGAAAGATCTTTGTCTGTTGAAGCCACCAGGATCTATACCCACAGCCCCAACCTAAGCTGCAGATCTCTATGTCTAGCCGTGTCTGTGTCTATGGGAATTCTCGTTCCTtgaatttccagcatatccttg---aacaccccaatc
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002711v1     478874 149 +    766320 TTTCTTAGGAAAGATCTTTGTCTGTTGAAGCCACCCAGATCTATACCCACAGTCCCAACCTAAGCTGCAGATCTATATGTCTAGCTGTGTCTGTGTCTATGGGGATTTTCGTTCCTtgaatttcctgcatatccttg---aacaccccaatc
i cerAty1.NW_012002711v1   I 2044 C 0
s chlSab2.chr17            28936581 149 -  71996105 TTTCTCAGGAAAGATCTTTGTCTGTTGAAGCCACCCAGATCTAGACCCACAGTCCCAACCTAAGCTGCAGATCTATATGTCTAGCTGTGTCTGTGTCTATGGGGATTCTCGTTCCTtgaatttcctgcatatccttg---aacactccaatc
i chlSab2.chr17            I 2039 C 0
s manLeu1.NW_012099233v1     112807 149 +    290775 TTTCTTAGGAAAGATCTTTGTCTGTTGAAGCCACCCAGATCTATACCCACAGTCCCAACCTAAGCTGCAGATCTATATGTCTAGCTGTGTCTGTGTCTATGGGGATTTTCGTTCCTTGAATTTCCTGCATATCCTTG---AACACCCCAATC
i manLeu1.NW_012099233v1   I 2044 C 0
s colAng1.NW_012115566v1    2560695 149 -   3067355 TTTCTCAGGAAAGATCTTTGTCTGTTGAAGCCACCCAGATCTATAACCACAGTCCCAACCTAAGCTGTAGATCTATATGTCTAGCTGTGTCTGTGTCTATGGGGATTCTCGTTCCTtgaatttcctgcatatccttg---aacaccccaatc
i colAng1.NW_012115566v1   I 2035 C 0
s saiBol1.JH378357           168013 149 -    242197 TTTCTCAGGAAAGATTTTTGTCTGTTGATTCCACCCAGATCTATACCCACAGCCCCAACCTGAGCTGCAGATCTATGTGTGTAGCTGTGTCTCTGTCTATGGAAATTCTCATTCCctgaattccctgaatatccttg---aacaccccaatc
i saiBol1.JH378357         I 10186 C 0
s cebCap1.NW_016107755v1     162237 149 -   1771730 TTTCTCAGGAAAGATCTTTGTCTGTTGATTCCACCCAGTTCTATACCCACAGCCCCAACCTGAGCTGCAGATCTATGTGTGTAGCTGTGTCTCTGTCTATGGAAATTCTCATTCCctgaattccctgcatatccttg---aacaccccaatc
i cebCap1.NW_016107755v1   I 2474 C 0
s aotNan1.NW_018509740v1     232056 143 -    457564 TTTCTCAGGAAAGATCTTTGTCTGTTGATTCCACCCAGATCTATACCCACAGCCCCAACCTGAGCTGCAGATCTATGTGTGTAGCTGTGTCTT------CGGAAATTCTCGTTCCCTGAATTCCCTGCATATCCTTG---AACACCCCAATC
i aotNan1.NW_018509740v1   I 9029 C 0
s otoGar3.GL873550            41687 138 +  18854210 TTTCCTGAGAAAGACATTTGTCTGCTGTTGTCTCTCGGATCTATACCCACAGCTCTGACCTAAGCAGTAGGTCTGTATATCTAGCTGCATCTGTGCACG-----------GTTCCCTAAATTCCCTTCATACCCTTG---AACCTGCCAAGA
i otoGar3.GL873550         I 3152 C 0
s mm10.chr17               57797455 107 -  94987271 TTTGTTAGGAATGAT-TTTGTCAGCCGAGACTAC--AGAGCTGTGTC----------------ACCGCAAGTCAGCAGGTCTAGCTTCA-----------------------TCACTACAATCCCTCCATTTTCCTG---AGCACATGGAGC
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     512758 2113 +    730504 I
e macNem1.NW_012011356v1    2727045 1768 -   2996164 I
e macFas5.chr4             29680881 1784 - 170955103 I
e rheMac8.chr4             30016983 1784 + 172585720 I

a score=1493900.000000
s hg38.chr6_GL000254v2_alt   825536 213 +   4827813 tctctgccatctccacgccactgagcatgccttttcctccaactctatccccaccaccatga--atttataagaacacacggtgtaaacagtatcttcgtc---------aaaaag-----ccttcccta-----------actct-----------------------tttcctccccatcctgggttatgt-gtccatcttctatcct-ctacacttccttcaaatgcctctcagagcatgtttcttcaacaatagcatcgtc
s panTro5.chr6             29788379 213 + 175400573 tctctgccatctccatgccactgagcatgccttttcctccaactctatccccaccaccatga--atttataagaacacacggtgtaaacagcatcttcgtc---------aaaaag-----ccttcccta-----------actct-----------------------tttcctccccatcctgggttatgt-gtccatcttctatcct-ctacacttccttcaaatgcctctcagagcatgtttcttcaacaatagcatcgtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30023024 213 + 173848474 tctctgccatctccatgccactgagcatgccttttcctccaactctatccccaccaccatga--atttataagaacacacggtgtaaacagcatcttcgtc---------aaaaag-----ccttcccta-----------actct-----------------------tttcctccccatcctgggttatgt-gtccatcttctatcct-ctacacttccttcaaatgcctctcagagcatgtttcttcaacaatagcatcgtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5826399 213 +   6154872 tctctgccatctccatgccactgagcatgccttttcctccaactctatccccaccaccatga--atttataagaacacacggtgtaaacagcatcttcatc---------aaaaag-----ccttcccta-----------actct-----------------------tttcctccccatcctgggttatgt-gtccatcttctatcct-ctacacttccttcaaatgcctctcagagcatgtttcttcaacaatagcatcgtc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74552589 213 + 122973662 tctctgccatctccatgccactgagcatgccttttcctccaactctatccccaccaccatga--atttataagaacacacggtgtaaacagcatcttcacc---------aaaaag-----ccttcccta-----------actct-----------------------tttcctccccatcctgggttatgt-gtccatcttctatcct-ctacacttccttcaaatgcctctcagagcatgtttcttcaacaatagcatcgtc
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002711v1     479023 213 +    766320 tctctgccatctccatgccactgagcatgccttttcctccaactctatccccaccgccatga--atttataagaacacacggtgtaaacagcatcttcgtc---------aaaaag-----ccttcccta-----------actct-----------------------cttcctccccatcctgggttatgt-gcccatcttctgtcct-ctacgcttccttcaaatgcctcccagaccgtgtttcttcaacaacagcatcgtc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28936730 213 -  71996105 tctctgccatctccatgccactgagcatgccttttcctccaactctatccccaccgccatga--atttataagaacacacagtgtaaacagcgtcttcgtc---------aaaaag-----ccttcccta-----------accct-----------------------cttcctccccatcctgggttatgt-gcccatcttctgtcct-ctacgcttccttcaaatgcctcccagaccgtgtttcttcaacaacagcatcgtc
i chlSab2.chr17            C 0 I 330
s manLeu1.NW_012099233v1     112956 213 +    290775 TCTCTGCCATCTCCATGCCACTGAGCATGCCTTTTCCTCCAACTCTATCCCCACCGCCATGA--ATTTATAAGAACACACGGTGTAAACAGCATCTTCGTC---------AAAAAG-----CCTTCCCTA-----------ACTCT-----------------------CTTCCTCCCCATCCTGGGTTATGT-GCCCATCTTCTGTCCT-CTACGCTTCCTTCAAATGCCTCCCAGACCGTGTTTCTTCAACAACAGCATCGTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2560844 212 -   3067355 tctctgccatctccatgccactgagcatgccttttcctccaactctatccccaccgccatga--atttataagaacacacggtgtaaacagcatcttcgtc---------aaaaag-----ccttcccta-----------actct-----------------------cttcct-cccatcctgggttatgt-gcccatcttctgtcct-ctacgcttccttcaaatgcctcccagagcgtgtttcttcaacaacagcatcgtc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           168162 212 -    242197 tatctgccatctccatgccattgagcatgccttttcctccaactctaccaccaccaccatga--attcataagaacacatggtgtaagcagaatctttgtg---------aaaaag-----ccttccctg-----------actgt-----------------------cttcct-cccatcctgggttatgt-gcccatcttttgttct-ctacacttcctacaaaagcctctcagagcctgtttcttcaataatagcattgtc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     162386 212 -   1771730 tatctgccatctccatgccattgagcatgccttttcctccaactctacccccaccaccatga--attcataagaacacatggtgtaagcagaatctttgtg---------gcaaag-----ctttccctg-----------actct-----------------------cttcct-cccatcctgggttatgt-gcccatcttttgttct-ctacacttcctacaaaagcctctcagagcctgtttcttcaataatagtattgtc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     232199 213 -    457564 TATCTGCCATCTCCATGCCATTGAGCATGGCTTTTCCTCCAACTCTACCCTCACCACCATGA--ATTCATGAGAACACACGGTGTAAGCAGCATCTTTGTC---------AAAAAG-----CCTTCCCTA-----------ACTCT-----------------------CTTCCTCCCCATCCTGGGTTATGT-GCCCATCTTTTGTTCT-CTACACTTCCTTCAAAAGCCTCTCAGAGCCTGTTTCTTCAATGATAGCATTGTC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     514871 221 +    730504 TCTCTGCCATCTCCAGGCCACTGAGTATGCCTTTTCCTCCAGCTCTACTCCCAATACCATGA--CTTTATAAGAATACACAGTGTAAGCAGTATGtcctgc---------aagaag-----ctttcccta-----------actct-----------ttcctca-----ctatcccccgatcctgggatatat-acccgccttctatcctcccatacttcctccaaaagcctctcagagcacatttctccagcaaaaggatcact
i proCoq1.NW_012152574v1   I 2113 C 0
s otoGar3.GL873550            41825 261 +  18854210 TCTCTGCCATCTCCAAGCCATGGAGCATGCCTTTTCC-CCAACTCTACTCTCAACATCATGC--ATTTATAAGAATATACAGCATAAACAGTATCTCCTTCTCACCTCAAAGGGAGTATGCCTTTCCCCAGGCATTCTCAGACTCTGTGTTTTGAACTTCCCTAATTTTCTTCCTCCCTATCCTAAGGTATGTAACCCATCTTCTGTCCTCCCATACATCCTTCAAAAGCCTCTCAGAACACATTTCTCCAAC-TGAGAATCATC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57797562 184 -  94987271 --TCTGCCTCCTC--AGCCAGTGAGCATGCCTCTCCCTCCAACACTACCCTAAACACCATGAGCATGAGTAAGAACACA--ACAAAGGCAACAT-TGCTTC---------AGGAGC-----CCCTACTCC-----------TCTCT---------------------------------------AGTTCTGG---------TTTATCCTCCCATACTTCCCCC-AATGTCTTTTGAAGACCATGTCTCTAGCAATGGAATCATC
i mm10.chr17               C 0 C 0
e macNem1.NW_012011356v1    2727045 1768 -   2996164 I
e macFas5.chr4             29680881 1784 - 170955103 I
e rheMac8.chr4             30016983 1784 + 172585720 I

a score=23556.000000
s hg38.chr6_GL000254v2_alt   825749 3 +   4827813 tgc
s panTro5.chr6             29788592 3 + 175400573 tgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30023237 3 + 173848474 tgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5826612 3 +   6154872 tgc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74552802 3 + 122973662 tgc
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002711v1     479236 3 +    766320 tgc
i cerAty1.NW_012002711v1   C 0 I 327
s manLeu1.NW_012099233v1     113169 3 +    290775 TGC
i manLeu1.NW_012099233v1   C 0 I 315
s colAng1.NW_012115566v1    2561056 3 -   3067355 tgc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           168374 3 -    242197 tgc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     162598 3 -   1771730 tgc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     232412 3 -    457564 TGC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     515092 3 +    730504 tgc
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            42086 3 +  18854210 TGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57797746 3 -  94987271 TCC
i mm10.chr17               C 0 C 0
e chlSab2.chr17            28936943 330 -  71996105 I
e macNem1.NW_012011356v1    2727045 1768 -   2996164 I
e macFas5.chr4             29680881 1784 - 170955103 I
e rheMac8.chr4             30016983 1784 + 172585720 I

a score=366283.000000
s hg38.chr6_GL000254v2_alt   825752 37 +   4827813 ttgtctgtaatctttagaaaagagtaggaatcttggg
s panTro5.chr6             29788595 37 + 175400573 ttgtctgtaatctttagaaaagagtaggaatcttggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30023240 37 + 173848474 ttgtctgtaatctttagaaaagagtaggaatcttggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5826615 37 +   6154872 ttgtctgtaatctttagaaaagagtaggaatcttggg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74552805 37 + 122973662 ttgtctgtaatctttagaagacagtaggaatcttgag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30018767 37 + 172585720 Ttgtctgtaatctttagaaaacagtaggaatcttgag
i rheMac8.chr4             I 1784 C 0
s macFas5.chr4             29682665 37 - 170955103 TTGTCTGTAATCTTTAGAAAACAGTAGGAATCTTGAG
i macFas5.chr4             I 1784 C 0
s macNem1.NW_012011356v1    2728813 37 -   2996164 Ttgtctgtaatctttagaaaacagtaggaatcttgag
i macNem1.NW_012011356v1   I 1768 C 0
s cerAty1.NW_012002711v1     479566 37 +    766320 ttgtctgtaatctttagaaaacagtaggaatcttgag
i cerAty1.NW_012002711v1   I 327 C 0
s chlSab2.chr17            28937273 37 -  71996105 ttgtctgtaatctttagaaaacagtaggaatcttgag
i chlSab2.chr17            I 330 C 0
s manLeu1.NW_012099233v1     113487 37 +    290775 Ttgtctgtaatctttagaaaacagtaggaatcttgag
i manLeu1.NW_012099233v1   I 315 C 0
s colAng1.NW_012115566v1    2561059 37 -   3067355 ttgtctgtaatctttagaaaacagtaggaatcttgag
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           168377 37 -    242197 ttgtctgtaatctttagaaaacagtaggactcttgag
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     162601 37 -   1771730 ttgtctgtaatctttagaaaacagtaggactcttgag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     232415 37 -    457564 TTGTCTGTAATCGTTAGAAAACAGTAGGAATCTTGAG
i aotNan1.NW_018509740v1   C 0 I 4277
s proCoq1.NW_012152574v1     515095 37 +    730504 ttgtctgtcacccccaataaacagtagaaatcttgag
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            42089 20 +  18854210 TTGTCTATCAGCCC--------------AGTC---AG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57797749 28 -  94987271 TTATATATTACCC--------CAGTAAGCA-CTTGAA
i mm10.chr17               C 0 C 0

a score=2567888.000000
s hg38.chr6_GL000254v2_alt   825789 236 +   4827813 ggtcgtgattgtgtcttaattaacttgtatctttagcactgttccagcatgctgtcaggcacaggaaataatttataaatgtttactaaatgcacaaatgaatTAATAA---ATGAATGAAAAGTAAGTAAATAACAAAAAAAGGAAAAGTAATATTTAGTGAGTACTTAAATTTCAAGAACTGCACAACATATTATTAAATGTTACCTTATTTACTGTTTCAGCATTTTAATGAAGTA
s panTro5.chr6             29788632 231 + 175400573 ggtcgtgattgtgtcttaattaacttgtatctttagcactgttccagcatgctgtcaggcacaggaaataatttataaatgtttactaaatgcacaaatgaatTTAAAA---ATGAATGAAAAGTAAGTAAATAAC-AAAAAAGGAAAAGTAATATTTAGTGAGTACTTAAATTTCAAGAACTGCACAATATATTATTAAATGTTACCTTATTTACTGTTTCAGCATTTTAATG----A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30023277 231 + 173848474 ggtcgtgattgtgtcttaattaacttgtatctttagcactgttccagcatgctgtcaggcacaggaaataatttataaatgtttactaaatgcacaaatgaatTAAAAA---ATGAATGAAAAGTAAGTAAATAAC-AAAAAAGGAAAAGTAATATTTAGTGAGTACTTAAATTTCAAGAACTGCACAACATATTATTAAATGTTACCTTATTTACTGTTTCGGCATTTTAATG----A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5826652 235 +   6154872 ggtcgtgattgtgtcttaattaacttgtatctttagcgctgttccagcatgctgtcaggcacaggaaataatttataaatgtttactaaatgcacaaatgaatTAAAAA---ATGAATGAAAAGTAAGTAAATAAC-AAAAAAGGAAAAGTAATATTAAGTGAGTACTTAAATTTCAAGAACTGCACAACATATTATTAAATGTTACCTTATTTACTGTTTCAGCATTTTAATGAAGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74552842 232 + 122973662 ggtcgtgattgtgtcttaattaacttgtatctttagcactgctccagcatgctgtctggcacaggaaataatttataaatgtttactaaatgcacaaatgaatTAATAA---ATGAATGAAAAGTAAGTAAATAAC----AAAGGAAAAGTAATATTTAGTGAGTACTTAAATTTCAAGAACTGCACAACATATTATTAAATGTTACCTTATTTACTGTTTCAGCATTTTAATGAAGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30018804 235 + 172585720 ggtcgtgattgtgtcttaattaacttgtatctttagcactgctccagcatgctgtctggcacaggaaataatttataaatgtttactaaatgcacaaatgaatTAATAA---ATGAATGAAAAGTACATAAATAAC-AAAAAAGGAAAAGTAATATTTAGTGAGTACTTAAATTTCAAGAACTGAACAATTTATTATTAAATATTACCTTATTTACTGTTTCAGCATTTTAATGAAGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29682702 235 - 170955103 GGTCGTGATTGTGTCTTAATTAACTTGTATCTTTAGCACTGCTCCAGCATGCTGTCTGGCACAGGAAATAATTTATAAATGTTTACTAaatgcacaaatgaattaataa---atgaatgaaAAGTACATAAATAAC-AAAAAAGGAAAAGTAATATTTAGTGAGTACTTAAATTTCAAGAACTGAACAATTTATTATTAAATATTACCTTATTTACTGTTTCAGCATTTTAATGAAGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2728850 235 -   2996164 ggtcgtgattgtgtcttaattaacttgtatctttagcactgctccagcatgctgtctggcacaggaaataatttataaatgtttactaaatgcacaaatgaatTAATAA---ATGAATGAAAAGTACATAAATAAC-AAAAAAGGAAAAGTAATATTTAGTGAGTACTTAAATTTCAAGAACTGAACAATTTATTATTAAATATTACCTTATTTACTGTTTCAGCATTTTAATGAAGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     479603 235 +    766320 ggtcgtgattgtgtcttaattaacttgtatctttagccctgctccagcatgctgtctggcacaggaaataatttataaatgtttactaaatgcacaaatgaatTAATAA---ATGAATGAAAAGTACATAAATAAC-AAAAAAGGAAAAGTAATATTTAGTGAGTACTTAAATTTCAAGAACTGAACAATTTATTATTAAATATTACCTTATTTACTGTTTCAGCATTTTAATGAAGTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28937310 235 -  71996105 ggtcgtgattgtgtcttaattaacttgtatctttagcactgctccagcatgctgtctggcacaggaaataatttataaatgtttactaaatgcacaaatgaatTAATAA---ATGAATGAAAAGTACATAAATAAC-AAAAAAGGAAAAGTAATATTTAGTGAGTACTTAAATTTCAAGAACTGAACAATTTATTATTAAATATTACCTTATTTACTGTTTCAGCATTTTAATGAAGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     113524 235 +    290775 ggtcgtgattgtgtcttaattaacttgtatctttagcactgctccagcatgctgtctggcacaggaaataatttataaatgtttactaaatgcacaaatgaatTAATAA---ATGAATGAAAAGTACATAAATAAC-AAAAAAGGAAAAGTAATATTTAGTGAGTACTTAAATTTCAAGAACTGAACAATTTATTATTAAATATTACCTTATTTACTGTTTCAGCATTTTAATGAAGTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2561096 235 -   3067355 ggtcgtgattgtgtcttaattaacttgtatctttagcactggtccagcatgctgtctggcacaggaaataatttataaatgtatactaaatgcacaaatgaatTAATAA---ATGAATGAAAAGTATGTAAATAAC-AAAAAAGGAAAAGTAATATTTAGTGAGTAGTTAAATTTCAAGAACTGAACAATTTATTATTAAATGTTACCTTATTTACTGTTTCAGCATTTTAATGAAGTA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           168414 238 -    242197 agtcatgatagtgtcttaattaacttttatctttagcactgccccagcatgctgtctggcacgggaaatactttataaatgtttactaaatgcacaaatgaatTAATAATTCATGAATGACAAGTAAGAAAATAAC-AAAAAAGGAAAAGTAATATTTAGTGAGTACTTAAATTTCAAGAACTGCACAAGATACTATTAAATGATACCTCATTTACTGTTTTAGCATTTTAATAAAGTA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     162638 231 -   1771730 agtcatgatggtatcttaattaacttctatctttagcactgctccagcatgctgtctggcatgggaaatactttataaatgttaacttaatgcacaaatgaatTAATAA---ATGAATGACAAGTAAGAAAATAAC-AAAAAAGGAAAAGTAATATTTAGTGAGTACTTAAACTTCAAGAACTGCACAAGATACTATTAAATGTTACCTCATTTACTGTTTTAGCATTTTAATA----A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     236729 231 -    457564 gGTCATGATGGTGTCCTAATTAACTTCtgtctttagcaccgctccagcatgctgtctggcacaggaaatactttataaatgtttgctaaatgcacaaaCAAATTAATAA---ATGAATGATAAGTAAGAAAATAAC-AAAAAAGGAAAAGTAATATTTAGTGAGTACTTTAATTTCAAGAACTGCACAAGATACTATTAAATGTTACCTCATTTACTGTTTCAGTATTTTAATA----A
i aotNan1.NW_018509740v1   I 4277 C 0
s proCoq1.NW_012152574v1     515132 231 +    730504 ggtcatgattgtgtcttagttaacttgtatcttcagtactgcccaagcctgctgtctgacacaggaaatactttataaa----ttctaaatgcatgaatgaatTaataa---atgaatgaataataagtaaataaC-AAAAAAGGGAAAGTAATATTTAGTGAGTACTTATATATCAGGAACTGCACAAGATATGATTAAATGGTACCTCATTTACTGTTTCAGTATTCTACCGAAGTA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            42109 227 +  18854210 GTTCATGACTGTGTT----TTAATTTCTATTTTCAGCACTGTCCCAGCATG----CTGACACAGGAAATGCTTTATAAACGTTTACTAAATGCATTAATGACTTAATAA---ATGAATGAAAAATAAGTAAATAAC-AAAAAAGGCAAAGTAATATTTGATGAGTACTTATGTTTCAGGAACTTCACAAGACATTATTAAATGGTACCTCTGTTACTGTTTTGCTATTCTAATGACATA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57797777 188 -  94987271 GACCATGATTGTGTTCTAGTTCACTTGTATCTCCAGTGGCTGCCCAGCTTGTAATCTGGCACTGAAA----------------------------GAATAAATAAACAA---ATGAATG-----------AATAAC-AAA------AAAGTAACGTTCAGTGAGAATTTATATTTCTGAAATGGCGTAAGAT-TGTTTAAACATGATATCACTTGCTTTTTCA-TATCCTGGTGAAGTA
i mm10.chr17               C 0 I 34

a score=406815.000000
s hg38.chr6_GL000254v2_alt   826025 36 +   4827813 AGTAcaggtgctccttcacttatgatggggttacat
s panTro5.chr6             29788863 36 + 175400573 AGTAcaggtgctccttcacttatgatggggttacat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30023508 36 + 173848474 AGTAcaggtgctccttcacttatgatggggttacat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5826887 36 +   6154872 AGTAcaggtgctccttcacttatgatggggttacat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74553074 36 + 122973662 AGTAcaggtgctctttcacttatgacggggttacat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30019039 36 + 172585720 AGTAcaggtgctccttaacttatgatggggttacat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29682937 36 - 170955103 AGTAcaggtgctccttaacttatgatggggttacat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2729085 36 -   2996164 AGTAcaggtgctccttaacttatgatggggttacat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     479838 36 +    766320 AGTAcaggtgctccttaacttatgatggggttacat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28937545 36 -  71996105 AGTAcaggtgctccttaacttatgatggggttacat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     113759 36 +    290775 AGTAcaggtgctccttaacttatgatggggttacat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2561331 36 -   3067355 AGTAcaggtgttccttaacttatgatggggttacat
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           168652 36 -    242197 AGTAcaggtgatccttaacttatgatggggttacat
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     162869 36 -   1771730 AGCAcaggtgatccttaacttatgacagtattacat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     236960 36 -    457564 AGTAcaggtgatccttaacttatgatggggttacat
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     515363 36 +    730504 GGTAcagatgttcctcaacttatgatggggttacat
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            42336 36 +  18854210 ACTAcagatgctccttaacttatgatgggattatgt
i otoGar3.GL873550         C 0 I 646
e mm10.chr17               57797965 34 -  94987271 I

a score=353898.000000
s hg38.chr6_GL000254v2_alt   826061 34 +   4827813 ccctgtaaacccattgtacactgaaaatatccaa
s panTro5.chr6             29788899 34 + 175400573 ccctgtaaacccattgtacactgaaaatatccaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30023544 34 + 173848474 ccctgtaaacccattgtacactgaaaatatccaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5826923 34 +   6154872 ccctgtaaacccactgtacactgaaaatatccaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74553110 34 + 122973662 cccagtaaacccattgtacactgaaaatatccaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30019075 34 + 172585720 cccagtaaacccattgtacactgaaaatatccaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29682973 34 - 170955103 cccagtaaacccattgtacactgaaaatatccaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2729121 34 -   2996164 cccagtaaacccattgtacactgaaaatatccaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     479874 34 +    766320 cccagtaaacccattgtacactgaaaatatccaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28937581 34 -  71996105 cccagtaaacccattgtacactgaaaatatccaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     113795 34 +    290775 cccagtaaacccattgtacactgaaaatatccaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2561367 34 -   3067355 cccagtaaacccattgtacactgaaaatatccaa
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           168688 34 -    242197 cccagtaaacccattgtacactgaaaatatACAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     162905 34 -   1771730 cccagtaaacccattgtacactgaaaatatcCAA
i cebCap1.NW_016107755v1   C 0 I 91
s aotNan1.NW_018509740v1     236996 34 -    457564 cccagtaaacccattgcacactgaaaatatccaa
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     515399 34 +    730504 tccaataaactcattgtaaattgaaaatatccta
i proCoq1.NW_012152574v1   C 0 C 0
e mm10.chr17               57797965 34 -  94987271 I
e otoGar3.GL873550            42372 646 +  18854210 I

a score=15694.000000
s hg38.chr6_GL000254v2_alt   826095 2 +   4827813 aa
s panTro5.chr6             29788933 2 + 175400573 aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30023578 2 + 173848474 aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5826957 2 +   6154872 aa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74553144 2 + 122973662 aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30019109 2 + 172585720 aa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29683007 2 - 170955103 aa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2729155 2 -   2996164 aa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     479908 2 +    766320 aa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28937615 2 -  71996105 aa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     113829 2 +    290775 aa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2561401 2 -   3067355 aa
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           168722 2 -    242197 ga
i saiBol1.JH378357         C 0 I 86
s aotNan1.NW_018509740v1     237030 2 -    457564 aa
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     515433 2 +    730504 ag
i proCoq1.NW_012152574v1   C 0 C 0
e mm10.chr17               57797965 34 -  94987271 I
e otoGar3.GL873550            42372 646 +  18854210 I
e cebCap1.NW_016107755v1     162939 91 -   1771730 I

a score=194700.000000
s hg38.chr6_GL000254v2_alt   826097 25 +   4827813 tcagaaatgcatttaatacacctaa
s panTro5.chr6             29788935 25 + 175400573 tcagaaatgcatttaatacacctaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30023580 25 + 173848474 tcagaaatgcatttaatacacctaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5826959 25 +   6154872 tcagaaatgcatttaatacacctaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74553146 25 + 122973662 tcagaaatgcatttaatacacctaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30019111 25 + 172585720 tcagaaatgcatttaatacacttaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29683009 25 - 170955103 tcagaaatgcatttaatacacttaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2729157 25 -   2996164 tcagaaatgcatttaatacacttaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     479910 25 +    766320 tcagaaatgcatttaatacacttaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28937617 25 -  71996105 tcagaaatgcatttaatacacttaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     113831 25 +    290775 tcagaaatgcatttaatacacttaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2561403 25 -   3067355 tcagaaatgcatttaatacacttaa
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     237032 25 -    457564 tcagaacttcatttagtacacctta
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     515435 25 +    730504 tcaaaaatgcatttaatacacttaa
i proCoq1.NW_012152574v1   C 0 C 0
e mm10.chr17               57797965 34 -  94987271 I
e saiBol1.JH378357           168724 86 -    242197 I
e otoGar3.GL873550            42372 646 +  18854210 I
e cebCap1.NW_016107755v1     162939 91 -   1771730 I

a score=827917.000000
s hg38.chr6_GL000254v2_alt   826122 93 +   4827813 cccaccaaacatcatagcttaacctaacctgccttaaacatgctcagaacacttacattagcatacagttggac-aaaattatctaacaaaaag
s panTro5.chr6             29788960 93 + 175400573 cccaccaaacatcatagcttaacctaacctgccttaaacatgctcagaacacttacattagcatacagttggac-aaaattatctaacaaaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30023605 93 + 173848474 cccaccaaacatcatagcttaacctaacctgccttaaacatgctcagaacacttacattagcatacagttggac-aaaattatctaacaaaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5826984 93 +   6154872 cccaccaaacatcatagcttaacctaacctgccttaaacatgctcagaacacttacattagcatacagttggac-aaaattatctaacaaaaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74553171 93 + 122973662 cccaccaaacatcatagcttaacttaacctgccttaaacatacacagaacacttacattagcatacagttggac-aaagttatctaacaaaaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30019136 93 + 172585720 accaccaaacatcatagcttaacctaacctgccttaaacatgctcagaacacttacattagcatacagttggac-aaaattatctaacaaaaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29683034 93 - 170955103 accaccaaacatcatagcttaacctaacctgccttaaacatgctcagaacacttacattagcatacagttggac-aaaattatctaacaaaaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2729182 93 -   2996164 accaccaaacatcatagcttaacctaacctgccttaaacatgctcagaacacttacattagcatacagttggac-aaaattatctaacaaaaag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     479935 93 +    766320 accaccaaatatcatagcttaacctaacctgccttaaacatgctcagaacacttacattagcatacagttggac-aaaattatctaacaaaaag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28937642 93 -  71996105 accaccaaatatcatagcttaacctaacctgccttaaacatgctcagaacacttacattagcatacagttggac-aaaattatctaacaaaaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     113856 93 +    290775 accaccaaatatcataacttaacctaacctgccttaaacatgctcagaacacttacattagcatacagttggac-aaaattatctaacaaaaag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2561428 93 -   3067355 accaccaaacatcatagcttaacctaacctgccttaaacatgctcagaacacttacattagcatacagttggac-aaaattatctaacaaaaag
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     237057 93 -    457564 cccaccaaacatcatagcttaacctgacctaccttaaacatgctcagaacacttacattagcacacagttcgac-aaaattatctaacaaaaag
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     515460 93 +    730504 tctatcaaacatcatagcttagcctaacctaccttaaatgtgctcagaacacttacattagcctacagttaagc-aaaatcatctaacacaaag
i proCoq1.NW_012152574v1   C 0 I 190
s otoGar3.GL873550            43018 94 +  18854210 cccatcaaatatcatagcttaatctaacctacttttaacatgctcagaatgcttacattagcccacagttgggtaaaaatcatttaacacaaag
i otoGar3.GL873550         I 646 C 0
e mm10.chr17               57797965 34 -  94987271 I
e saiBol1.JH378357           168724 86 -    242197 I
e cebCap1.NW_016107755v1     162939 91 -   1771730 I

a score=1173068.000000
s hg38.chr6_GL000254v2_alt   826215 173 +   4827813 tgtatttactactgaagtgtgaaatatctcatttaagttattaaatactgtactgaaagtgaaaagca-gatgattt-tatgggaacttgaag-taggtttctactgagtatgtattgctttggtatcactattaaataaa-aaatcataaatggaatcatt----gtaagGAACCACCTC
s panTro5.chr6             29789053 173 + 175400573 tgtatttactactgaagtgtgaaatatctcatttaagttattaaatactgtactgaaagtgaaaagca-gatgattt-tatgggaacttgaag-taggtttctactgagtatgtattgctttggcatcactattaaataaa-aaatcataaatggaatcatt----gtaaggaaccacctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30023698 173 + 173848474 tgtatttactactgaagtgtgaaatatctcatttaagttattaaatactgtactgaaagtgaaaagca-gatgattt-tatgggaacttgaag-taggtttctactgagtatgtattgctttggcatcactattaaataaa-aaatcataaatggaatcatt----gtaaggaaccacctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5827077 173 +   6154872 tgtatttactactgaagtgtgaaatatctcatttaagttattaaatactgtactgaaagtgaaaagca-gatgattt-tatgggaacttgaag-taggtttctactgagtatgtattgctttggcatcactattaaataaa-aaatcataaatggaatcatt----gtaaggaaccacctg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74553264 174 + 122973662 cgtgtttactactgaagtgtgaaatatctcatttaagttattaaatactgtactgaaagtgaaaagcacaatgattt-tatgggaacttgaag-taggtttctactgagtatgtattggtttggcatcactattaaataaa-aaatcataagtggaatcatt----gtaagGAATCACCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30019229 178 + 172585720 cctattttctactgaagtgtgaaatatctcatttaagttattaaatactgtactgaaagtgaaaagca-gactgatt-tatgggaacttgaag-taggtttctactgaatatgtattgctttggcatcactattaaataaaaaaatagtaagtggaatcattgtaagtaaggaaccacctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29683127 178 - 170955103 cctattttctactgaagtgtgaaatatctcatttaagttattaaatactgtactgaaagtgaaaagca-gactgatt-tatgggaacttgaag-taggtttctactgaatatgtattgctttggcatcactattaaataaacaaatagtaagtggaatcattgtaagtaaggaaccacctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2729275 178 -   2996164 cctattttctactgaagtgtgaaatatctcatttaagttattaaatactgtactgaaagtgaaaagca-gactgatt-tatgggaacttgaag-taggtttctactgaatatgtattgctttggcatcactattaaataaaaaaatagtaagtggaatcattgtaagtaaggaacaacctg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     480028 174 +    766320 cctattttctattgaagtgtgaaatatctcatttaagttattaaatactgtactgaaagtgaaaagca-gactgatt-tatgggaacttgaag-taggtttctactgaatacatattgctttggcatcactattaaataaaaaaattgtaagtggaatcatt----gtaaggaaccacctg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28937735 174 -  71996105 cctattttctactgaagtgtgaaatatctcatttaagttattaaatactgtactgaaagtgaaaagca-gactgatt-tatgggaacttgaag-taggtttctactgaatacatattgctttggcatcactattaaataaaaaaattgtaagtggaatcatt----gtaaggaaccacctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     113949 174 +    290775 cctattttctattgaagtgtgaaatatctcatttaagttattaaatactgtactgaaagtgaaaagca-gactgatt-tatgggaacttgaag-taggtttctactgaatacatattgctttggcatcactattaaataaaaaaattgtaagtggaatcatt----gtaaggaaccacctg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2561521 178 -   3067355 cctattttctactgaagtgtgaaatatctcatttaagttattaaatactgtactgaaagtgaaaagca-gactgatt-tatgggaacttgaag-taggtttctactgaatacgtattgctttggcatcactattaaataaaaaaatcataagtggaatcattgtaaggaaggaaccacctg
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     237150 178 -    457564 cctattttctactgaagcgtgaaatatctcatttaagttattaaatattatactgaaagtgaaaagca-gaatgattggatgggaac-tgaag-tatgtttatactgaatatgtattgctttggcatcactattaaataaaaaaattataagtggaatcattgtaagtaaggaaccacctg
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            43112 166 +  18854210 cctattttatagtaaggtgttaaatatctcatatattttattgaatactgtactgaaagcaaaaaaca-ga--attg-tatgggtactcacatctcagtttccactgaatgtgtactacttt-gcctcattgcaaaggtga-aaatc---------attatcctaagtagggaaccatctA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57797965  34 -  94987271 I
e proCoq1.NW_012152574v1     515553 190 +    730504 I
e saiBol1.JH378357           168724  86 -    242197 I
e cebCap1.NW_016107755v1     162939  91 -   1771730 I

a score=213587.000000
s hg38.chr6_GL000254v2_alt   826388 40 +   4827813 TATTAGTATCCCCGTTAATAAGTAAGAAGCTACCTCATCC
s panTro5.chr6             29789226 40 + 175400573 TATTAGTACCCTTGTTAATAAGTAAGAAGCTACATCATCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30023871 40 + 173848474 TATTAGTACCCCTGTTAATAAGTAAGAAGCTACATCATCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5827250 40 +   6154872 TATTAGTACCCCCGTTAATAAGTAAGAAGCTACCTCATCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74553438 40 + 122973662 TATTAGTACCCCTGTTAATAAGTAAGAAGCTACCTCATCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30019407 17 + 172585720 TATTAGTATCCC-----------------------CATCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29683305 17 - 170955103 TATTAGTATCCC-----------------------CATCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2729453 17 -   2996164 TATTAGTATCCC-----------------------CATCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     480202 40 +    766320 TATTAGTATCCCTGTTAATAAGCAAGGAGCTACCTCATCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28937909 40 -  71996105 TATTAGTATCCCTGTTAATAAGCAAGGAGCTACCTCATCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     114123 40 +    290775 TATTAGTATCCCTGTTAATAAGCAAGGAGCTACCTCATCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2561699 40 -   3067355 TATTAGTATCCCTGTTAATAAGCGAGGAGCCACCTCATCC
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     237328 40 -    457564 TATTAGTATCCTTGTTAATAAACAAGAAGCTACCTCACCT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     515743 40 +    730504 TATTAATATCCCTGTTGATACACAAGAAGCTAATTCACCC
i proCoq1.NW_012152574v1   I 190 C 0
s otoGar3.GL873550            43278 40 +  18854210 TATTAGGATTCCTGTTGACAAGCGAGAAGCTAATTTGCCC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57797965 34 -  94987271 I
e saiBol1.JH378357           168724 86 -    242197 I
e cebCap1.NW_016107755v1     162939 91 -   1771730 I

a score=253216.000000
s hg38.chr6_GL000254v2_alt   826428 28 +   4827813 ACAATCATATTAGTAGTAGCTGGTAAGC
s panTro5.chr6             29789266 28 + 175400573 ACAATCATATTAGTAGTAGCCGGTAAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30023911 28 + 173848474 ACAATCATATTAGTAGTAGCCGGTAAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5827290 28 +   6154872 ACAGTCATATTAGTAGTAGCTGGTAAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74553478 28 + 122973662 ACAATCATATTAGAAGTAGCTGGTAAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30019424 28 + 172585720 ACAATCATAGTAGTAGTAGCTGGTAAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29683322 28 - 170955103 ACAATCATAGTAGTAGTAGCTGGTAAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2729470 28 -   2996164 ACAATCATAGTAGTAGTAGCTGGTAAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     480242 28 +    766320 ACAATCATATTAGTAGTAGCAGGTAAGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28937949 28 -  71996105 ACAATCATATTAGTAGTAGCTGGTAAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     114163 28 +    290775 ACAATCATATTAGTAGTAGCAGGTAAGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2561739 28 -   3067355 ACAATCATATTAGTAGTAGCTGGTAAGC
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     237368 28 -    457564 GCAATCACATTAGTAGTAACTGGTAAGC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     515783 28 +    730504 CCAGTCATATTAGTAGCAGCTGGTAAGC
i proCoq1.NW_012152574v1   C 0 I 170
s otoGar3.GL873550            43318 28 +  18854210 ACAGTCATATTAATAGCACCTGGTAAGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57797999 28 -  94987271 ACAGTCATGGGAGTACTAGCCACCAAGT
i mm10.chr17               I 34 C 0
e saiBol1.JH378357           168724 86 -    242197 I
e cebCap1.NW_016107755v1     162939 91 -   1771730 I

a score=1325875.000000
s hg38.chr6_GL000254v2_alt   826456 173 +   4827813 AAGGGTTCAAACACTAATC-------------TGTATTTCTAT--------AGTCCTTGTATTCTTCCTATATTATTATGTTATTTCAGTGGGAAAAGGCAGGGAGAAAAGTGCTACTGGAGTTGGGTATTTCCAGCATGGGGTTAC---TGTGAGGGCAAATCTAATATACTCTCAGAAAAAACTAATTCAGGGGA
s panTro5.chr6             29789294 173 + 175400573 AAGGGTTCAAACACTAATC-------------TGTATTTCTAT--------AGTCCTTGTATTCTTCCTATATTATTATGTTATTTCAGTGGGAAAAGGCAGGGAGAAAAGTGCTACTGGAGTTGGGTATTTCCAGCATGGGGTTAC---TGTGAGGGCAAATCTAATATACTCTCAGAAAAAACTAATTCAGGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30023939 173 + 173848474 AAGGGTTCAAACACTAATC-------------TGTATTTCTAT--------AGTCCTTGTATTCTTCCTATATTATTATGTTATTTCAGTGGGAAAAGGCAGGGAGAAAAGTGCTACTGGAGTTGGGTATTTCCAGCATGGGGTTAC---TGTGAGGGCAAATCTAATATACTCTCAGAAAAAACTAATTCAGGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5827318 173 +   6154872 AAGGGTTCAAACACTAATC-------------TGTATTTCTAT--------AGTCCTTGTATTCTTCCTATATTATTATGTTATTTCAGTGGGAAAAGGCAGGGAGAAAAGTGCTACTGGAGTTGGGTATTTCCAGCATGGGGTTAC---TGTGAGGGCAAATCTAATATACTCTCAGAAAAAACTAATTCAGGGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74553506 173 + 122973662 AAGGGTTCAAATGCTAATC-------------TGTATTTCTAT--------AGTCCTTGTATTCTTCCTATATTATTATGTTATTTCAGTGGGAAAAGGCGGGGAGAAAAGTGCTACTGGAGTTGGGTATTTCCAGCATGGGGTTAC---TGTGAGGGCAAACCTAATATACTCTCAGAAAAAACTAATTCAGGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30019452 173 + 172585720 AAGGGTTCAAACGCTAATC-------------TGTATTTCTAT--------AGTCCTCGTATTCTTCCCATATTATTATATTCTTTCAGTGGGAAAAGGCGAGGAGAAAAGTGCTACTGGAGTTGGGTATTTCCAGCATGGGGTTAC---TGTGAGGGCAAATCTAATATACTCTCAGAAAAAACTAGTTCAGGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29683350 173 - 170955103 AAGGGTTCAAACGCTAATC-------------TGTATTTCTAT--------AGTCCTCGTATTCTTCCCATATTATTATATTCTTTCAGTGGGAAAAGGCGAGGAGAAAAGTGCTACTGGAGTTGGGTATTTCCAGCATGGGGTTAC---TGTGAGGGCAAATCTAATATACTCTCAGAAAAAACTAGTTCAGGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2729498 173 -   2996164 AAGGGTTCAAACGCTAATC-------------TGTATTTCTAT--------AGTCCTCGTATTCTTCCCATATTATTATATTCTTTCTGTGGGAAAAGGCGAGGAGAAAAGTGCTACTGGAGTTGGGTATTTCCAGCATGGGGTTAC---TGTGAGGGCAAATCTAATATACTCTCAGAAAAAACTAGTTCAGGGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     480270 173 +    766320 AAGGGTTCAAACGCTAATC-------------TGTATTTCTAT--------AGTCCTTGTATTCTTCCCATATTATTATATTCTTTCAGTGGGAAAAGGTGAGGAGAAAAGTGCTACTGGAGTTGGGTATTTCCAGCATGGGGTTAC---TGTGAGGGCAAATCTAATATACTCTCAGAAAAAACTAGTTCAGGGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28937977 173 -  71996105 AAGGGTTCAAACGCTAATC-------------TGTATTTCTAT--------AGTCCTTGTATTCTTCCCATATTATTATATTCTTTCAGTGGGAAAAGGCGAGGAGAAAAGTGCTACTGGAGTTGGGTATTTCCAGCATGGGGTTAC---TGTGAGGGCAAATCTAATATACTCTCAGAAAAAACTAGTTCAGGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     114191 173 +    290775 AAGGGTTCAAACGCTAATC-------------TGTATTTCTAT--------AGTCCTTGTATTCTTCCCATATTATTATATTCTTTCAGTGGGAAAAGGCGAGGAGAAAAGTGCTACTGGAGTTGGGTATTTCCAGCATGGGGTTAC---TGTGAGGGCAAATCTAATATACTCTCAGAAAAAACTAGTTCAGGGGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2561767 173 -   3067355 AAGGGTTCAAACGCTAATC-------------TGTATTTCTAT--------AGTCCTTGTATTCTTCCCATATTATTATATTCTTTCAGTGGGAAAAGGCGAGGAGAAAAGTGCTACTGGAGTTGGGTATTTCCAGCATGGGGTTAC---TGTGAGGGCAAATCTAATATACTCTCAGAAAAAACTAATTCAGGGGA
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     237396 170 -    457564 AAGTGTTCAAATGCTAATC-------------TGTATTTCTAT--------AGTCCTTGTATTCTTCTCA---TATTATGTTATTTCACTGGGAAAAGGTAGGGAGAAAAATGCTTCCGGAGTTGGGGATTTCCAGCATGGGGTTAC---TGTGAGGGCAAATCTAAGATACTCCCAGGAAAAACCAATTCAGAGAG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            43346 164 +  18854210 AAGGGCTCCAATGCAAATC---------------TATTTCTGT--------AGACCTCGTCTTCTTG------TATTGCTTTGCTTCAGTGGAAGGAAAAGAGGCAGTGAGAGCCACTGGAGTTGGGGATTTCCAGCATGAGGTCAC---TATGAGGGCAAA-CAGGGATATTCCCGGGACAACCTAATTCAGATGA
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57798027 197 -  94987271 ACTAGTACAAGTACTAGTCACCAAGATCCCAGTGTACATCTTTGCTACTCGAGTCCTTGGCTTCTAATCATATTGTTGTTGCCTCCAAAGGAAGGAAAGAGAAGAAGAAACACTCATGGCAGATGGGGGTTTCCAGTATGGAGTGACAAGTCGGAGGGCAATTCTGGTATGTTCCTGGGAAAAGCTACCTCAAGGGT
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     515811 170 +    730504 I
e saiBol1.JH378357           168724  86 -    242197 I
e cebCap1.NW_016107755v1     162939  91 -   1771730 I

a score=940433.000000
s hg38.chr6_GL000254v2_alt   826629 110 +   4827813 TTCCCTACCCAGAGATGACCTGGATTCTGGGAAATAGTGCCCTTTCAAGAAAACATATGAACAACAAACCTGGACTCTGACC---TCTCTCTCTCTCTTTACTCTTCCCTTCC
s panTro5.chr6             29789467 110 + 175400573 TTCCCTACCCAGAGATGACCTGGATTCTGGGAAATAGTGCCCTTTCAAGAAAACATATGAACAACAAACCTGGACTCTGACC---TCTCTCTCTCTCTTTACTCTTCCCTTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30024112 110 + 173848474 TTCCCTACCCAGAGATGACCTGGATTCTGGGAAATAGTGCCCTTTCAAGAAAACATATGAACAACAAACCTGGACTCTGACC---TCTCTCTCTCTCTTTACTCTTCCCTTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5827491 110 +   6154872 TTCCCTGCCCAGAGATGACCTGGATTCTGGGAAATGGTGCCCTTTCAAGAAAACATATGAACAACAAACCTGGACTCTGACC---TCTCTCTCTCTCTTTACTCTTTCCTTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74553679 110 + 122973662 TTCCCTACCCAGAGAGGACCTGGATTCTGGGAAATAGTGCCCTTTCAAGAAAACATATGAACAACCAACCTGGACTCTGACC---TCTCTCTCTCTCTTTATTCTTCCCGTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30019625 106 + 172585720 TTTCCTACCCAGAGAGGACCTGGATTCCGGGAAATAGTGCCCTTTCAAGAAGACATATGAACAACAAATCTGAACTCTGACC---TCTCTCTCTC----TACTCTTCCCTTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29683523 106 - 170955103 TTTCCTACCCAGAGAGGACCTGGATTCCGGGAAATAGTGCCCTTTCAAGAAGACATATGAACAACAAATCTGAACTCTGACC---TCTCTCTCTC----TACTCTTCCCTTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2729671 106 -   2996164 TTTCCTACCCAGAGAGGACCTGGATTCCGGGAAATAGTGCCCTTTCAAGAAGACATATGAACAACAAATCTGAACTCTGACC---TCTCTCTCTC----TACTCTTCCCTTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     480443 106 +    766320 TTTCCTACCCAGAGAGGACCTGGATTCCGGGAAATAGTGCCCTTTCAAGAAGACATATGAACAACAAATCTGAACTCTGACC---TCTCTCTCTC----TACTCTTCCCTTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28938150 106 -  71996105 TTTCCTACCCAGAGAGGACCTGGATTCCGGGAAATAGTGCCCTTTCAAGAAGACATATGAACAACAAAtctgaactctgacc---tctgtctctc----tactctgcctTTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     114364 106 +    290775 TTTCCTACCCAGAGAGGACCTGGATTCCGGGAAATAGTGCCCTTTCAAGAAGACATATGAACAACAAATCTGAACTCTGACC---TCTCTCTCTC----TACTCTTCCCTTCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2561940 104 -   3067355 TTTCCTGCCCAGAGAGGACCTGGATTCCGGGAAATAGTGCCCTTTCAAGAAGACATATGAACAACAAATCTGAACTCTGACC---TC--TCTCTC----TACTCTTCCCTTCC
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     237566 110 -    457564 TTCCCTACCCAGAGAGGACCTGGATTTCGAGAAATAGTGCCCTTTCAAGAAGACACATGAACAACAAACCTGGACTCTCACC---TCTCTATCTCTCTTTACTGTTCCCTTCC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     515981 107 +    730504 TTCCTTACTCACAGAGGACCTGGATTCTGAGAAACAGTGCCTGTTCAAGGA---ATATAAACACCAAATCTGGACTCTGAtc---tctctctctctcttttctcttcccttcC
i proCoq1.NW_012152574v1   I 170 C 0
s otoGar3.GL873550            43511 103 +  18854210 TTGCTCACCCAGAGAGGACCTGGATTCTCATAAATAGGGCCCTTTCAAGGA---ATAAACACAACAAATCTGGACTCTGATC---TCTCTCTCTC----TTCTCTTCCCTTCC
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57798224 109 -  94987271 TTCCCCAC-CAGAGAAGACCTAGATTCTCAGAAATGGGGTGTTTTCAAGTA---ATTTAAACAATAGAGCTGAACTCTGACCCCTTCTCTTCCTCCCGTCCCTCTTCCTTTCC
i mm10.chr17               C 0 I 71
e saiBol1.JH378357           168724  86 -    242197 I
e cebCap1.NW_016107755v1     162939  91 -   1771730 I

a score=1465086.000000
s hg38.chr6_GL000254v2_alt   826739 180 +   4827813 TATGGGAAATTCCCTCCCTGCCCATAGCCAGGGCCAGGACTGTCCCAGACACCTTGGTGCCCCTTTGCTGACCACAGGCAGGACTTCATCTTGGGACCTGACCTCC---TTGCTTCTTACCCAGTGTCAATCTGACTTTTT-TCTGTCTCTCTCTATGTCACAATAAGTTCTTTCAGAGACAGA
s panTro5.chr6             29789577 179 + 175400573 TATGGGAAATTCCCTCCCTGCCCAAAGCTAGGGCCAGGACTGTCCCAGACACCTTGGTGCCCCTTTGCTGACCACAGGCAGGACTTCCTCTTGGGACCTGACCTCC---TTGCTTCTTACCCAGTGTCAATCTGAC-TTTT-TCTGTCTCTCTCTATGTCACAATAAGTTTTTTCAGAGACAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30024222 179 + 173848474 TATGGGAAATTCCCTCCCTGCCCAAAGCTAGGGCCAGGACTGTCCCAGACACCTTGGTGCCCCTTTGCTGACCACAGGCAGGACTTCCTCTTGGGACCTGACCTCC---TTGCTTCTTACCCAGTGTCAATCTGAC-TTTT-TCTGTCTCTCTCTATGTCACAATAAGTTTTTTCAGAGACAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5827601 180 +   6154872 TATGGGAAATTCCCTCCCTGCCCAAAGCCAGGGCCAGGACTGTCCCAGACACCTTGGTGCCCCTTTGCTGACCACAGGCAGGACTTCATCTTGGGACCTGACCTCC---TTGCTTCTTACCCAGTGTCAATCTGACTTTTT-TCTGTCTCTCTCTATGTCACAATAAGTTCTTTCAGAGACAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74553789 180 + 122973662 TATGGGAAATTCCCTCCCTGCCCAAAGCCAGGGCCAGGACTGTCCCAGACACCTTGGTGCCCCTTTGCTGACCACAGGCAGGATTTCATCTTGGGACCTGACCTCC---TTGCTTCTTACCCAGTGTCAATCTGACTTTTT-TTTCTCTCTCTCTATGTCACAATAAGTTCTTTCAGAGACAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30019731 178 + 172585720 TATGAGAAATTCCCTCCCTGCCCAAAGCCAGGGCCAAGACTGTCCCAGACACCCTGGTGCCCCTTTGCTGACCACAGGCAGGATTTCTTCTTGGGACCTGGCCTCC---TTGCTTCTTACCCAGTGTCAATCTGACTTTTT---TCTCTCTCTCTATGTTACAATAAGTTCTTTCAGAGACAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29683629 178 - 170955103 TATGAGAAATTCCCTCCCTGCCCAAAGCCAGGGCCAAGACTGTCCCAGACACCCTGGTGCCCCTTTGCTGACCACAGGCAGGATTTCTTCTTGGGACCTGGCCTCC---TTGCTTCTTACCCAGTGTCAATCTGACTTTTT---TCTCTCTCTCTATGTTACAATAAGTTCTTTCAGACACAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2729777 178 -   2996164 TATGAGAAATTCCCTCCCTGCCCAAAGCCAGGGCCAAGACTGTCCCAGACACCCTGGTGCCCCTTTGCTGACCACAGGCAGGATTTCTTCTTGGGACCTGGCCTCC---TTGCTTCTTACCCAGTGTCAATCTGACTTTTT---TCTCTCTCTCTATGTTACAATAAGTTCTTTCAGAGACAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     480549 178 +    766320 TATGAGAAATTCCCTCCCTGCCCAAAGCCAGGGCCAAGACTGTCCCAGACACCCTGGTGCCCCTTTACTGACCACAGGCAGGATTTCTTCTTGGGACCTGGCCTCC---TTGCTTCTTACCCAGTGTCAATCTGACTTTTT---TCTGTCTCTCTATGTTACAATAAGTTCTTTCAGAGACAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28938256 180 -  71996105 TATGAGAAATTCCCTCCCTGCCCAAAGCCAGGGCCAAGACTGTCCCAGACACCCTGGTGCCCCTTTGCTGACCACAGGCAGGTTTTCTTCTTGGGACTTGGCCTCC---TTGCTTCTTACCCAGTGTCAATCTGACTTTTT-TCTCTCTCTCTCTATGTTACAATAAGTTCTTTCAGAGACCGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     114470 178 +    290775 TATGAGAAATTCCCTCCCTGCCCAAAGCCAGGGCCAAGACTGTCCCAGACACCCTGGTGCCCCTTTACTGACCACAGGCAGGATTTCTTCTTGGGACCTGGCCTCC---TTGCTTCTTACCCAGTGTCAATCTGACTTTTT---TCTGTCTCTCTATGTTACAATAAGTTCTTTCAGAGACAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2562044 178 -   3067355 TATGAGAAATTCCCTCCCCGCCCAAAGCCAGGGCCAAGACTGTCCCAGACACCCTGGTGCCCTTTTGCTGACCACAGGCAGGATTTCTTCTTGGGACCTGGCCTCC---TTGCTTCTTATCCAGTGTCAATCTGACTTTTT---TCTCTCTCTCTATGTTACAATAAGTTCTTTCAGAGACAGA
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     237676 181 -    457564 AATGGGAAATTCCCTCCCTGCCCAAAGCCAAGGATAAGACTGTCCCAGACACCCTGGTGCCCTTTTGCTGACCACAGGCAGGACTTCTTCTTGGGACCTGGCCTCC---TTGCTTCTTAACCGGTGTCAATTTGACTTTTTGTCACTCTCTATCTATGTCACAATAAGTTCTTTCAGAGACAGA
i aotNan1.NW_018509740v1   C 0 I 5
s proCoq1.NW_012152574v1     516088 172 +    730504 TATGAGAAATTCCCTGCCTGCCCAAGGCCACAGTGAAGGCTGTCCCTG--------GTGTCCCTTTGCTGACCACAGGCAGGATTTCTCCTTGGGACCTGACCTTCTATTTTCCTCTTACCCAGTGGCAATCTGACTTTTT----CTCCCCCTCCGTGTCACAATAAATTCTTTCAGAGGCAGA
i proCoq1.NW_012152574v1   C 0 I 183
s otoGar3.GL873550            43614 176 +  18854210 TATGAGAAATTCCTTTTCTGCCCAAGGCCACTGTGAGGGCTATTCCAGACATCCCAGTGTCCCTTTGCTGACTACAAACAGGATTTCTCCTTGGGATCTGCCTTTCTCTTTTATTCTTACCCAGTGTTAATCTGACTTTTC----CCTCCTTTCTAT----CAGTAAATTCTTTCAGAGGTGAA
i otoGar3.GL873550         C 0 I 4
e mm10.chr17               57798333  71 -  94987271 I
e saiBol1.JH378357           168724  86 -    242197 I
e cebCap1.NW_016107755v1     162939  91 -   1771730 I

a score=278710.000000
s hg38.chr6_GL000254v2_alt   826919 44 +   4827813 TCTCTTTTCATTTGCtgttttagtctcttttgcatacta--taaag--
s panTro5.chr6             29789756 43 + 175400573 TCTCTTTTCATTTGCtgtattagtctc-tttgcatacta--taaag--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30024401 43 + 173848474 TCTCTTTTCATTTGCtgtattagtctc-tttgcatacta--taaag--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5827781 44 +   6154872 TCTCTTTTCACTTGCtgtattagtctcttttgcatacta--taaag--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74553969 44 + 122973662 TCTCTTTTCATTTGCtgtattagtctcttttgcatacta--taaag--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30019909 44 + 172585720 TCTCTTTTAATTTGCtgtattagtctgttttgcatacta--taaag--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29683807 44 - 170955103 TCTCTTTTAATTTGCtgtattagtctgttttgcatacta--taaag--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2729955 44 -   2996164 TCTCTTTTAATTTGCtgtattagtctgttttgcatacta--taaag--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     480727 44 +    766320 TCTCTTTTAATTTGCtgtattagtctgttttgcatacta--taaag--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28938436 44 -  71996105 TCTCTTTTAATTTGCtgtattagtctgttttgcatacta--taaag--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     114648 44 +    290775 TCTCTTTTAATTTGCtgtattagtctgttttgcatacta--taaag--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2562222 44 -   3067355 TCTCTTTTAATTTGCtgtattagtctgttttgcatacta--taaag--
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     237862 44 -    457564 TTCTTTTCCATTTCCtgtattagtctattttgcatacta--taatg--
i aotNan1.NW_018509740v1   I 5 C 0
s otoGar3.GL873550            43794 48 +  18854210 TCTCTTTGCATTTGCCCTGCTAACAATTTTAGAAAACCAGCCAAAATG
i otoGar3.GL873550         I 4 C 0
e mm10.chr17               57798333 71 -  94987271 I
e proCoq1.NW_012152574v1     516260 183 +    730504 I
e saiBol1.JH378357           168724 86 -    242197 I
e cebCap1.NW_016107755v1     162939 91 -   1771730 I

a score=2378179.000000
s hg38.chr6_GL000254v2_alt   826963 355 +   4827813 gaatacttgaggctgggtaatttataaggaaaaaaagtttaattgattcatagttcctccaactatacaagaagtatggcaccagcatctgcttctggtgaggcctcaagaagcttttactcatggtggaaggtgaaggagagcaggcgtgtcacatggcaagagagggaggtaagagacagtgggaaaaatgccaggctcttttaaacaaccagctctcttgtgagctaatggagtgagaactcatttattacaatgatgacagccccaggccattcatgagggatctgccaccacaacccaaacatctcccagtgggcccatttccaacactgggggtcacatttcaacatga
s panTro5.chr6             29789799 355 + 175400573 gaatacttgaggccaggtaatttataaggaaaaaaagtttaattgattcatagttctgccaactatacaagaagtatggcaccagcatctgcttctggtgaggcctcaagaagcttttactcatggtggaaggtgaaggagagcaggcgtgtcacacggcaagagagggaggtaagagacagtgggaaaaatgccaggctcttttaaacaaccagctctcatgtgagctaatggagtgagaactcattcattacgatgatgacagccccaggccattcataagggatctgccaccacaacccaaacacctcccagtaggcctatttccaacactgggggtcacatttcaacatga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30024444 354 + 173848474 gaatacttgaggctaggtaatttataagg-aaaaaagtttaattgattcatagttctgccaactatacaagaagtatggcaccaccatctgcttctggtgaggcctcaagaagcttttactcatggtggaaggtgaaggagagcaggcgtgtcacacggcaagagagggaggtaagagacagtgggaaaaatgccaggctcttttaaacaaccagctctcatgtgagctaatggagtgagaactcattcattacgatgatgacagccccaggccattcataagggatctgccaccacaacccaaacacctcccagtaggcctatttccaacactgggggtcacatttcaacatga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5827825 355 +   6154872 gaataattgaggctgggtaatttataaggaaaaaaagtttaattgattcatagttctgccaactatacaagaagtatggcaccagcatctgcttctggtgaggcctcaagaagcttttactcatggtggaaggtgaaggagagcaggcgtgtcacatggcaagagagggaggtaagagacagtgggaaaaatgccaggctcttttaaacaaccagctctcatgtgagctaacggagtgagaactcattcattacgatgatgacagccccaggccattcatgagggatctaccgccacaacccaaacacctcccagtaggcccatttccaacactgggagtcacatttcaacatga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74554013 354 + 122973662 gaatacttgaggctatgtaatttataaga-agaaaagtttaattgattcatagttctgccaactgtacaagaagtatggcaccagcatctgcttctggtgaggcctcaagaagcttttactcatggcggaaggtgaaggagagcaggtgtgtcacatggcaagagagggaggtaagagacagtgggaaaaatgccaggttcttttaaacaaccagctctcatgtgagctaatggagtgagaactcattcattacgatgatgacagccccaagccattcatgagggatctgccaccacaccccaaacacctcccagtaggcccatttccaacactgggggtcacatttcaacatga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30019953 355 + 172585720 gagtacttgaggctgggtaatttataaggaaaaaaagtttaattggttcatagttccgccaactgttcaagaagtatggcaccagcatctgcttctggagaggcctcaagaagcttctactcacggtggaaggtgaaagacagcaggcgtgtcatgtggcgagagagggaggtaagagacagtgggaaaaatgccaggctcttttaaacaaccaactctcatgtgagctaatggagtgagaactcattcattacaatgatgacagccccaagccattcatgagggatctgccaccacaagccaaacacctcccagtaggtccatttccaacactgggggtcacatttcaacatga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29683851 355 - 170955103 gagtacttgaggctgggtaatttataaggaaaaaaagtttaattggttcatagttccgccaactgttcaagaagtatggcaccagcatctgcttctggagaggcctcaagaagcttctactcacggtggaaggtgaaagacagcaggcgtgtcatgtggcgagagagggaggtaagagacagtgggaaaaatgccaggctcttttaaacaaccaactctcatgtgagctaatggagtgagaactcattcattacaatgatgacagccccaagccattcatgagggatctgccaccacaagccaaacacctcccagtaggtccatttccaacactgggggtcacatttcaacatga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2729999 355 -   2996164 gagtacttgaggctgggtaatttataaggaaaaaaagtttaattggttcatagttccgccaactgttcaagaagtatggcaccagcatctgcttctggagaggcctcaagaagcttctactcacggtggaaggtgaaagacagcaggcgtgtcatgtggcgagagagggaggtaagagacagtgggaaaaatgccaggctcttttaaacaaccaactctcatgtgagctaatggagtgagaactcattcattacaatgatgacagccccaagccattcatgagggatctgccaccacaagccaaacacctcccagtaggtccatttccaacactgggggtcacatttcaacatga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     480771 355 +    766320 gagtacttgagactgggtaatttataaggaaaaaaagtttaattggttcatagttccaccaactgtacaagaagtatggcaccagcatctgcttctggtgaggcctcaagaagcttctactcacggtggaaagtgaaagacagcaggcgtgtcacgtggcgagagagggaggtaagagacagtgggaaaaatgccaggctcttttaaacaaccagctctcatgtgagctaatggagtgagaacttattcattacaatgatgacagccccaagccattcatgagggatctgccaccacaagccaaacacctcccagtaggcccatttccaacactgggggccacatttcaacatga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28938480 353 -  71996105 gagtacgtgaggctgggtaatttataaggaaaaaaactttaattggttcatagttccgccaactgtataagaagtatggcaccagcatctgcttctggtgaggcctcaagaagcttttactcatggtggaaggtgaaagacagcaggcatgtcatgtggctagagagggaggtaagagacagtgggaaaaatgccaggctc--ttaaacaaccagctatcatgtgagctaatggagtgagaactcattcattacaatgatgacagccccaagccattcatgagggatctgccaccacaagccaaacacctcccagtaggcccatttccaacactgggggtcacatttcaacatga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     114692 355 +    290775 gagtacttgagactgggtaatttataaggaaaaaaagtttaattggttcatagttccaccaactgtacaagaagtatggcaacagcatctgcttctggtgaggcctcaagaagcttctactcacggtggaaagtgaaagacagcaggcgtgtcacgtggcgagagagggaggtaagagacagtgggaaaaatgccaggctcttttaaacaaccagctctcatgtgagctaatggagtgagaacttattcattacaatgatgacagccccaagccattcatgagggatctgccaccacaagccaaacacctcccagtaggcccatttccaacactgggggccacatttcaacatga
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2562266 355 -   3067355 gagtacttgaggctgggtaatttataaggaaaaacagtttaattggttcatagttccactaactgtacaagaagtatggcaccagcatctgcttctggtgaggcctcaagaagcttttactcacagcggaaggtgaaagacagcaggcgtgtcatgtggcgagagagggaggtaagagacagtgggaaaaatgccaggcttttttaaacaaccagctctcatgtgagctaatggagtgagaactcattcattacaatgatgacagccccaagccattcatgagggatctgccaccacaagccaaacacctcccagtaggcccatttccaacacttggggtcacatttcaacatga
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     237906 355 -    457564 aaacacctgtggctgggtaattcataaagaaaaaatgtttaattagttcatagttctgctaactgtacaagaagtgtggcaccagcatctgcttctggtgaggcctcaagaagcttttactcatggtagaaggtgaagaggagcagaagtgtcacatggcgagagagggaggtaagagacagtggaaaagatgccaggatcttttaaacaatcagctctcaagtgagctaatagagtgagaactcattcattaccatgaagacagccccaagccattcatgagggatctgccaccataacccagacacctcccactaggcccatttccaacattggaggtcacatttcaacatga
i aotNan1.NW_018509740v1   C 0 I 3
e mm10.chr17               57798333  71 -  94987271 I
e proCoq1.NW_012152574v1     516260 183 +    730504 I
e saiBol1.JH378357           168724  86 -    242197 I
e otoGar3.GL873550            43842   0 +  18854210 C
e cebCap1.NW_016107755v1     162939  91 -   1771730 I

a score=4085673.000000
s hg38.chr6_GL000254v2_alt   827318 706 +   4827813 gatctggagagtacaaacatccaaactacatcaTTTACCCCTCTGACAAATTCAGAAAACCAGCTAAAGtgtcagaggtgtttgaaccagagcaactccatcttgaataggggctggataaaataaggctg--acatctactaggctgcattcccaggaagttaggcattctaagtcacaggatgagagaggagatcagcacaaagtacaggttataaagaccttgcaaataaaaggaagcagtaaagaagccagccaaaacccaccaaaaccaagatggcaacgaaagtgacttctggtcattctcactgctcattatatgctaaataaaacattaacatgctaaaaaatattcccaccagggccatggcagtttacagatgccatggcaatgtccagaagttactctatatggtctaaaaagaggaggaaccctcagttccaggaatttcccacttctttcctggaaaacttgtgaataagccaccccttgtttagtatataatcaagaaataaccataaaaatagtcaaccagcagccctcagggctgctctgcctataaagtagccattctttttt-tcctttactttcttaatacgcttgctttcagtttactctatggattcaccctgaattctttcttgtgcaagatccaataacgctctcttgggggctggatcaggatccctttccagtaacaAAAGTAA
s panTro5.chr6             29790154 706 + 175400573 gatctggagagtacaaacatcccaactacatcaTTTACCCCTCTGACAAATTCAGAAAACCAACTAAAGtgtcagaggtgtttgaaccagagcaactccatcttgaataggggttgggtaaaataaggctg--acatctactaggctgcattcccaggaagttaggcattctaagtcacaggatgagagaggagatcagcacaaagtacaggttataaagactttgcaaataaaaggaagcagtaaagaagccagccaaaacccaccaaaaccaagatggcaacgaaagtgacctctggtcattttcactgctcattatatgctaaataaaacattagcatgctaaaaaatattcccaccagggccatggcagtttacagatgccatggcaatgtgcagaagttactctatatggtctaaaaagaggaggaaccctcagttccaggaatttcccacttctttcctggaaaactcgtgaataagccaccccttgtttagtatataatcaagaaataaccataaaaatagtcaaccagcagccctcagggctgctctgcctataaagtagccattccttttt-tcctttactttcttaatacgcttgctttcagtttactctatggattcaccctgaattctttctcgtgcaagatccaataatgctctcttgggggctggatcaggatccctttccagtgacaAAAGTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30024798 706 + 173848474 gatctggagagtacaaacatcccaactacatcaTTTACCCCTCTGACAAATTCAGAAAACCAACTAAAGtgtcagaggtgtttgaaccagagcaactccatcttgaataggggctgggtaaaataaggctg--acatctactaggctgcattcccaggaagttaggcattctaagtcacaggatgagagaggagatcagcacaaagtacaggttataaagactttgcaaataaaaggaagcagtaaagaagccagccaaaacccaccaaaaccaagatggcaacgaaagtgacctctggtcattttcactgctcattatatgctaaataaaacattagcatgctaaaaaatattcccaccagggccatggcagtttacagatgccatggcaatgtgcaaaagttactctatatggtctaaaaagaggaggaaccctcagttccaggaatttcccacttctttcctggaaaactcgtgaataagccaccccttgtttagtatataatcaagaaataaccataaaaatagtcaaccagcagccctcagggctgctctgcctataaagtagccattccttttt-tcctttactttcttaatacgcttgctttcagtttactctatggattcaccctgaattctttctcgtgcaagatccaataatgctctcttgggggctggatcaggatccctttccagtgacaAAAGTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5828180 706 +   6154872 gatctggagagtacaaacatccaaactacatcaTTTACCCCTCTGACAAATTCAGAAAACCAGCTAAAGtgtcagaggtgtttgaaccagagcaactccatcttgaataggggctggataaaataaggctg--acatctactaggctgcattcccaggaagttaggcattctaagtcacatgatgagagaggagatcagcacaaagtacaggttataaagaccttgcaaataaaacgaagcagtaaagaagccagccaaaacccaccaaaaccaagatggcaacgaaagtgacctctggtcattctcactgctcattatatgctaaataaaacattagcatgctaaaaaatattcccaccagggccatggcagtttacagatgccatggcaatgtccagaagttactctatatggtctaaaaagaggaggaaccctcagttccaggaatttcccacttctttcctggaaaactcgtgaataagccaccccttgtttagtatataatcaagaaataaccataaaaatagtcaaccagcagccctcaggactgctctgcctataaagtagccattctttttt-tcctttactttcttaatacgcttgctttcagtttactctatggattcaccctgaattctttcttgtgcaagatccaataacgctctcttgggggctggatcaggatccctttccagtaacaAAAGTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74554367 705 + 122973662 gatctggagagtacaaacatccaaactacatcaTTTACCCCTCTGACAAATTCAGAAAACCAGCTAAAGtgtcagaggtgtttgagccagagcaactccatcttgaataggggctgggtaaaataaggttg--acacctactaggcagcattcccaggaagttaggcattgtaagtcacgggatgagagaggagatcagcacaaagtgcaggttataaagaccttgcaaataaaaggaagcagtaaagaagccagccaaaacccaccaaaaccaagagggcaacgaaagtgacctctggtcattctcactgctcattatatgctaaataaaacatcagcatgctaaaaaatattcccaccagggccatggcagtttacagatgccatggcaatgtccagaagttactctatatggtctaaaaaaaggaggaaccgtcagttccaggaattgcccacttctttcctggaaaactcgtgaataagccaccccttgtttagtatgtaatcaagaaataaccataaaaatagtcaaccagcagccctcagggcttctctgcctgtaaaacagccattctttttt-tcctttactttctgaatatgcttgctttcagtttactctatggattcaccctgaattctttcttgtgcaagatccaataacactctcttgggggctggatcaggatccctttccagtaacaAAAGT-A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30020308 705 + 172585720 gatctggagagtacaaacatccaaactacatcaTTTACCCCTCTGACAAGTTCAGAAAACCAGCTAAAGtgtcagagatgtttgaaccagagcaactccatcttgaataggggctgggtaaaataaggctg--acacctactaggctgcattcccaggaagttaggcattctaagtcacaggatgagagaggagatcagcacaaagtacaggttataaagaccttgcaaataaaaggaagcagtaaagaagccagccaaaacccaccaaaaccaagatggcaacgaaagtgacctctggtcattctcactgctcattatatgctaaataaaacattaacatgctaaaaaatattcccaccagga-catgacagtttacagatgccatggcaatgtccagaagttactctatatagtctgaaaagaggaggagccctcagttccaggaattgcccacttgtttcctggaaaactcatgaataagccatcccttgtttagtgtataatcaagaaataaccataaaaatagtcaatgagcagcactcagggttgctctgcctataaagtagccattctttttttccctttactttcttaatatccttgctttccatttactctatggattcaccctgaattctttcttgtgcaagatccagtaacgctctcttggggtctggatcaggatccctttccagtaacaAAAGT-A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29684206 705 - 170955103 gatctggagagtacaaacatccaaactacatcaTTTACCCCTCTGACAAGTTCAGAAAACCAGCTAAAGtgtcagagatgtttgaaccagagcaactccatcttgaataggggctgggtaaaataaggctg--acacctactaggctgcattcccaggaagttaggcattctaagtcacaggatgagagaggaaatcagcacaaagtacaggttataaagaccttgcaaataaaaggaagcagtaaagaagccagccaaaacccaccaaaaccaagatggcaacgaaagtgacctctggtcattctcactgctcattatatgctaaataaaacattaacatgctaaaaaatattcccaccagga-catgacagtttacagatgccatggcaatgtccagaagttactctatatagtctgaaaagaggaggagccctcagttccaggaattgcccacttgtttcctggaaaactcatgaataagccatcccttgtttagtgtataatcaagaaataaccataaaaatagtcaatgagcagcactcagggttgctctgcctataaagtagccattctttttttccctttactttcttaatatccttgctttccatttactctatggattcaccctgaattctttcttgtgcaagatccagtaacgctctcttggggtctggatcaggatccctttccagtaacaAAAGT-A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2730354 700 -   2996164 gatctggagagtacaaacatccaaactatatcaTTTACCCCTCTGACAAGTTCAGAAAACCAGCTAAAGtgtcagagacgtttgagccagagcaactccatcttgaataggggctgggtaaaataaggctg--acacctactaggctgcattcccaggaagttaggcattctaagtcacaggatgagagaggagatcagcacaaagtacaggttataaagaccttgcaaataaaaggaagcagtaaagaagccagccaaaacccaccaaaaccaagatggcaacgaaagtgacctctggtcattctcactgctcattatatgctaaataaaacattaacatgctaaaaaatattcccaccagga-catgacagtttacagatgccatggcaatgtgcagaagttactctatatagtctgaaaagaggaggagccctcagttccaggaattgcccacttgtttcctggaaaactcatgaataagccatcccttgtttagtgtataatcaagaaataaccataaaaatagtcaatgagcagcactcagggt-----tgcctataaagtagccattctttttttccctttactttcttaatatccttgctttccatttactctatggattcaccctgaattctttcttgtgcaagatccagtaacgctctcttggggtctggatcaggatccctttccagtaacaAAAGT-A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     481126 705 +    766320 gatctggagagtacaaacatccaaactacatcaTTTACCCCTCTGACAAGTTCAGAAAACCAGCTAAAGtgtcagaggtgtttgaaccagagcaactccatcttgaataggggctgggtaaaataaggctg--acacctactaggctgcattcccaggaagttaggcattctaagtcacaggatgagagaggagatcagcacaaagtacaggttataaagaccttccaaataaaaggaagcagtaaagaagccagccaaaacccaccaaaaccgagatggcaacgaaagtgacctctggtcattctcactgctcattatatgctaaataaaacattaacatgctaaaaaatattcccaccagga-catgacagtttacagatgccatggcaatgttcagaagttactctgtatggtctgaaaagaggaggagccctcagttccaggaattgcccacttttttcctggaaaactcatgaataagccatcccttgtttagtgtataatcaagaaataaccataaaaatagtcaaccagcagcactcagggttgctctgcctataaagtagccattctttttttccctttactttcttaatatgcttgctttccatttactctatggattcaccctgaattctttcttgtgcaagatccagtaacactttcttggggtctggatcaggatccctttccagtaacaAAACT-A
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28938833 706 -  71996105 ggtctggagagtacaaacatccaaactacatcaTTTACCCCTCTGACAAGTTCAGAAAACCAGTTGAAGtgtcagaggtgtttgaaccagagcaactccatcttgaataggggctgggtaaaataaggctgacacacctactaggctgcattcccaggaagtcaggcattctaagtcacaggatgagagaggagatcagcacaaagtacaggttataaagaccttgcaaataaaaggaagcagtaaagaagccagccaaaacccaccaaaaccaagatggcaacgaaagtgacctctggtcattctcactgctcattatatgctaaataaaacattaacatgctaaaaaatattcccaccagga-catgacagtttacagatgccatggcaatgtccagaagttactctatatggtctgaaaagaggaggagccctcagttccaggaattgcccacttctttcctggaaaactcatgaataagccatcccttgtttagtgtataatcaagaaataa-tataaaaatagtcaatgagcagcactcagggttgctctgcctataaagtaaccattcttttttcccctttactttcttaatatgcttgctttccatttactctatggattcaccctgaattctttcttgtgcaagatccagtaacgctctcttggggtctggatcaggatccctttccagtaacaAAAGT-A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     115047 705 +    290775 gatctggagagtacaaacatccaaactacatcaTTTACCCCTCTGACAAGTTCAGAAAACCAGCTAAAAtgtcagaggtgtttgaaccagagcaactccatcttgaataggggctgggtaaaataaggctg--acacctactaggctgcattcccagaaagttaggcattctaagtcacaggatgagagaggagatcagcacaaagtacaggttataaagaccttccaaataaaaggaagcagtaaagaagccagccaaaacccaccaaaaccgagatggcaacgaaagtgacctctggtcattctcactgctcattatatgctaaataaaacattaacatgctaaaaaatattcccaccagga-catgacagtttacagatgccatggcaatgttcagaagttactctgtatggtctgaaaagaggaggagccctcagttccaggaattgcccacttttttcctggaaaactcatgaataagccatcccttgtttagtgtataatcaagaaataaccataaaaatagtcaaccagcagcactcagggttgctctgcctataaagtagccattctttttttccctttactttcttaatatgcttgctttccatttactctatggattcaccctgaattctttcttgtgcaagatccagtaacgctttcttggggtctggatcaggatccctttccagtaacaAAACT-A
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2562621 705 -   3067355 gatctggagagtacaaacatccaaactacatcaTTTACCCCTCTGACAAGTTCAGAAAACCAGCTAAAGtgtcagaggtgtttgaaccagagcaactccatcttgaataggggctgggtaaaataaggctg--acacctactaggctgcattcccaggaagttaggcattctaagtcacaggatgagagaggagatcagcacaaagtacaggttataaagaccttgcaaataaaaggaagcagtaaagaagccagccaaaacccaccaaaaccaagatggcaacgaaagtgacctctggtcattctcactgctcaatatatgctaaataaaacactaacttgctaaaaaatattcccaccagggccatgacagtttacagatgccatggcaatgtccagaagttactctgtatggtctgaaaagaggaggagccctcagttccaggacttgcccacttctttcctggaaaactcaagaataagccatcccttgtttagtgtataatcaagaaataaccataaaaatagtcaaccagcagcactcagggttgctctgcctataaagtagccattctttttg-ccctttactttcttaatatgcttgctttcagtttattctatggattcaccctgaattctttcttgtgccagatccagtaacgctctcttggggtctggatcaggatccctttccagtaacaAAAGT-A
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57798333  71 -  94987271 I
e proCoq1.NW_012152574v1     516260 183 +    730504 I
e saiBol1.JH378357           168724  86 -    242197 I
e otoGar3.GL873550            43842   0 +  18854210 C
e aotNan1.NW_018509740v1     238261   3 -    457564 I
e cebCap1.NW_016107755v1     162939  91 -   1771730 I

a score=956590.000000
s hg38.chr6_GL000254v2_alt   828024 156 +   4827813 AAAGATGATGGTATGAAGATCTTGCCAAGTTATAAAACAATTGTGGCGGTTATCTACGAGTGTCCCAATGTGGCCCTGGCTGACGGGATGCTCTTGGGCCTGTCACTGCCCCCAttgaagcctacttgaagcctacttgGAACAGATGTCTCTTTC
s panTro5.chr6             29790860 145 + 175400573 AAAGATGATGGTATGGAGATCTTGCCAAGTTATAAAACAATTGTTGCAGTTATCTACGAGTGTCCCAATGTGGCCCTGGCTGACGGGATGCTCTTGGGCCTGTCACTGCCCCCA-----------TTGAAGCCTACTTGGAACAGATGTCTCTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30025504 145 + 173848474 AAAGATGATGGTATGGAGATCTTGCCAAGTTATAAAACAATTGTTGCAGTTATCTACGAGTGTCCCAATGTGGCCCTGGCTGACGGGATGCTCTTGGGCCTGTCACTGCCCCCA-----------TTGAAGCCTACTTGGAACAGATGTCTCTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5828886 145 +   6154872 AAAGATGATGGTATGGAGATCTTGCCAAGTTATAAAACAATTGTTGCAGTTATCTACGAGTGTCCCAATGTGGCCCTGGCTGACGGGATGCTCTTGGGTCTGTCACTGCCCCCA-----------TTGAAGCCTACTTGGAACAGATGTCTCTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74555072 145 + 122973662 AAAGATGATGGTATGGAGATCTTGCCAAGTTATAAAACAATTGTTGCAGTTATCTGCGAGTGTCCCAATGTGGCCCTGGCTGACGGGATGCTCTTGGGCCTGTCACTGCCCCCA-----------TTGAGGCCTACTTGGAACAGATGTCTCTTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30021013 145 + 172585720 AAAGATGATGGTATGGAGATCTTGCCAAGTTATAAAACAATTGTTGCAGTTATGTACGAGTGTCCCACTGTGGCCCTGGCTGACGGGACGCTCTTGGGCCTGTCACTGCCCCCA-----------TTGAGGCCTACTTGGAACAGAGGTCTCTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29684911 145 - 170955103 AAAGATGATGGTATGGAGATCTTGCCAAGTTATAAAACAATTGTTGCAGTTATGTACGAGTGTCCCACTGTGGCCCTGGCTGACGGGACGCTCTTGGGCCTGTCACTGCCCCCA-----------TTGAGGCCTACTTGGAACAGAGGTCTCTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2731054 145 -   2996164 AAAGATGATGGTATGGAGATCTTGCCAAGTTATAAAACAATTGTTGCAGTTATGTACGAGTGTCCCACTGTGGCCCTGGCTGACGGGACGCTCTTGGGCCTGTCACTGCCCCCA-----------TTGAGGCCTACTTGGAACAGAGGTCTCTTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     481831 145 +    766320 AAAGATGATGGTATGGAGATCTTGCCAAGTTATAAAACAATTGTTGCAGTTATCTACGAGTGTCCCAGTGTGGCCCTGGCTGACGGGACGCTCTTGGGCCTGTCACTGCCCCCA-----------TTGAGGCCTACTTGGAACAGAGGTCTCTTTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28939539 145 -  71996105 AAAGATGATGGTATGGAGATCTTGCCAAGTTATAAAACAATTGTTGCAGTTATGTACGAGTGTCCCACTGTGGCCCTGGCTGACGGGACGCTCTTGGGCCTGTCACTGCCCCCA-----------TTGAGGCCTACTTGGAACAGAGGTCTCTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     115752 145 +    290775 AAAGATGATGGTATGGAGATCTTGCCAAGTTATAAAACAATTGTTGCAGTTATCTACGAGTGTCCCAGTGTGGCCCTGGCTGACGGGACGCTCTTGGGCCTGTCACTGCCCCCA-----------TTGAGGCCTACTTGGAACAGAGGTCTCTTTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2563326 145 -   3067355 AAAGATGATGGTATGGAGATCTTGCCAAGTTATAAAACAATTGTTGCAGTTATCTATGAGTGTCCCAGTGTGGCCCTGGCTGACGGGATGCTCTTGGGCCTGTCACTGCCCCCA-----------TTGAGGCCTACTTGGAACAGAGCTCTCTTTC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550            43842 144 +  18854210 AAAGATTATACTATGGAGATCTTACCAGGTTATAAAACAAATGTTTCAGCTATCTATAAACCTCACAGCATGACTCTGGGTGATAGG-TGTTCTGGGGCTAGTCGCTGCCCCCA-----------CTGAGGCCTCCTTGGAGCAGAAGTCTCTTTA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57798333  71 -  94987271 I
e proCoq1.NW_012152574v1     516260 183 +    730504 I
e saiBol1.JH378357           168724  86 -    242197 I
e aotNan1.NW_018509740v1     238261   3 -    457564 I
e cebCap1.NW_016107755v1     162939  91 -   1771730 I

a score=1851698.000000
s hg38.chr6_GL000254v2_alt   828180 252 +   4827813 TAGTCTCTTTAATAACGTCCATGAAAGAGTTTCT-AAACTGCTTTGAGATCTAGAATATTGCTTCAAAAATGCCAGCCAAACTCAGTCAGAAAGCTAGTGTGAATTCTCATTTATTGGTGATT--GGG-AAAAAA---GTCTACACTCAAAGAAGAACAGTTTGAAAATACCTACCAAAATTTAACATGGACATACCAAACCAAGACAACCAAATGCCTATCAGTATTAGGGAAATAGGTAACCAAATTGTAGAATATC
s panTro5.chr6             29791005 252 + 175400573 TAGTCTCTTTAATAACGTCCATGAAAGAGTTTCT-AAACTGCTTTGAGATCTAGAATATTGCTTCAAAAATGCCAACCAAACTCAGTCAGAAAGCTACTGTGAATTCTCATTTATTGGTGATT--GGG-AAAAAA---GTCTACACTCAAAGAAGAACAGTTTGAAAATACCTACCAAAATTTAACATGGACATACCAAACCAagacaaccaaatgcctatcagtattagggagataggtaaccaaattgtagaatatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30025649 252 + 173848474 TAGTCTCTTTAATAACGTCCATGAAAGAGTTTCT-AAACTGCTTTGAGATCTAGAATATTGCTTCAAAAATGCCAACCAAACTCAGTCAGAAAGCTACTGTGAATTCTCATTTATTGGTGATT--GGG-AAAAAA---GTCTACACTCAAAGAAGAACAGTTTGAAAATACCTACCAAAATTTAACATGGACATACCAAACCAagacaaccaaatgcctatcagtattagggagataggtaaccaaattgtagaatatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5829031 252 +   6154872 TAGTCTCTTTAATAATGTCCATGAAAGAGTTTCT-AAACTGCTTTGAGATCTAGAATATTGCTTCAAAAATGCTAACCAAACTCAGCCAGAAAGCTACTGTGAATTCTCATTTATTGGTGATT--GGG-AAAAAA---GTCTACACTCAAAGAAGAACAGTTTGAAAATACCTACCAAAATTTAACATGGACATACCAAACCAAGACAACCAAATGCCTATCAGTATTAGGGAAATAGGTAACCAAATTTTAGAATATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74555217 249 + 122973662 TAGTCTCTTTAATAATGTCCATGAAAGAGTTTCT-AAACTGCTTTGAGATTTAGAATATTGCTTCAAAAATGCCAACCAAACTCAGTCAGAAAGTTACTGTGAATTCTCATTTATTGGTGATT--GGG-AAAACA---GTCTACACTCA---AAGAACAGTTTGAAAATACCTATCAAAATTTAAAATGGACATACCAAACCAAGACAACCAAATACCTATCAGTATTAGGGAGATAGGTAATCAAATTGTAGAATATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30021158 252 + 172585720 TAGTCTCTTTAATAACTTCCATGAAAGAGTTTCT-AAACTGCTTTGAGATCTGGAATATCGCTTCAAAAATGCCAACCAAACTCAGTCACAAAGTTACTGTGAATTCTCATTTATTGGTGATT--GGG-AAAAAA---GTCTACACTCAAAGAAGAACAGTTTGAAAATACCTATCGAAATTTAAAATGGACATACCAAACCAAGACAACCAAATGCCTATCAGTGTTAGGGAAATAGGTAACCAAATTGTAGAATATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29685056 253 - 170955103 TAGTCTCTTTAATAACTTCCATGAAAGAGTTTCT-AAACTGCTTTGAGATCTGGAATATCGCTTCAAAAATGCCAACCAAACTCAGTCACAAAGTTACTGTGAATTCTCATTTATTGGTGATT--GGGAAAAAAA---GTCTACACTCAAAGAAGAACAGTTTGAAAATACCTATCGAAATTTAAAATGGACATACCAAACCAAGACAACCAAATGCCTATCAGTGTTAGGGAAATAGGTAACCAAATTGTAGAATATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2731199 252 -   2996164 TAGTCTCTTTAATAACTTCCATGAAAGAGTTTCT-AAACTGCTTTGAGATCTGGAATATCGCTTCAAAAATGCCAACCAAACTCAGTCACAAAGTTACTGTGAATTCTCATTTATTGGTGATT--GGG-AAAAAA---GTCTACACTCAAAGAAGAACAGTTTGAAAATACCTATCGAAATTTAAAATGGACATACCAAACCAAGACAACCAAATGCCTATCAGTGTTAGGGAAATAGGTAACCAAACTGTAGAATATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     481976 248 +    766320 TAGTCTCTTTAATAACGTCCATGAAAGAGTTTCT-AAACTGCTTTGAGATCTAGAATATCGCTTCAAAAATGCCAACCAAACTCAGTCAGAAAGTTACTGTGAATTCTCATTTATTGGTGATT--GGG-AAAAAA---GTCTACACTC----AAGAACAGTTTGAAAATACCTATCAAAATTTAAAATGGACATACCAAACCAAGACAACCAAATGCCTATCAGTGTTAGGGAAATAGGTAACCAAATTGTAGAATATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28939684 252 -  71996105 TAGTCTCTTTAATAACTTCCATGAAAGAGTTTCT-AAACTGCTTTGAGATCTAGAATATCGCTTCAAAAATGCCAACCAAACTCAGTCAGAAAGTTACTGTGAattctcatttattggtgatt--ggg-aaaaaa---gtctacactcaaagaagaacaatttgaaaatacctatcaaaatttaaaatggacataccAAACCAAGACAACCAAATGCCTATCAGTGTTAGGGAAATAGGTAACTAAATTGTAGAATATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     115897 248 +    290775 TAGTCTCTTTAATAACGTCCATGAAAGAGTTTCT-AAACTGCTTTGAGATCTAGAATATCGCTTCAAAAATGCCAACCAAACTCAGTCAGAAAGTTACTGTGAATTCTCATTTATTGGTGATT--GGG-AAAAAA---GTCTACACTC----AAGAACAGTTTGAAAATACCTATCAAAATTTAAAATGGACATACCAAACCAAGACAACCAAATGCCTATCAGTGTTAGGGAAATAGGTAACCAAATTGTAGAATATC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2563471 252 -   3067355 TAGTCTCTTTAATAACATCCATGAAAGAGTTTCT-AAACTGCTTTGAGATCTAGAATATCGCTTCAAAAATGCCAACCAAACTCAGTCAGAAAGTTACTGTGAattctcatttattggtgatt--ggg-aaaaaa---gtctacactcaaagaagaacagtttgaaaatacctatcaaaatttaaaatggacataccAAACCAAGACAACCAAATGCCTATCAGTGTTAGGGAAATAGGTAACCAAATTGTAGAATATC
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     516443 258 +    730504 TAGTCTCTTTAATAATATCCATGATGGCATTTCTTAGACTGCTTTGAGATCTAGAATATTGCTTCAGAAGTGACAACAAAACTCAGTCAAAAAGCTACTGTAAATTCTGGTTTATCGGTGGTTGTGGG-GAAAAAGTAGCCTACCCTTAAAGAAGAACAATTTGGAAATAACTATGAAAATTTAAAATAGATAtgccaaaccaagacaaccaaatgcctttcagtaacagggaaatagataactgaattgtggaatatc
i proCoq1.NW_012152574v1   I 183 I 88
s otoGar3.GL873550            43986 258 +  18854210 CAGTCTCTTTAATAATATCCATGAAGAAGTTTCTAAAACTACTTTCAAATCTAAAACATTGCTTCAGAAATGCCAACAAAACTCAGTATAAAAGCTACTATGAATTCTCATTTATTGGTGGTTCCAGG-AAAATACTGGTCTGCTCTTAAAGAAGAACAATTTGGAAATAATTATGAAAATTTAAAATAGATATTATGAATCAAGTCAAccaaatgtctttcagtaacaaggaaatagacaactgaattgtggaatatc
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57798333  71 -  94987271 I
e saiBol1.JH378357           168724  86 -    242197 I
e aotNan1.NW_018509740v1     238261   3 -    457564 I
e cebCap1.NW_016107755v1     162939  91 -   1771730 I

a score=452254.000000
s hg38.chr6_GL000254v2_alt   828432 78 +   4827813 ATAAGCAGCATAAATAGAAGGATCATACCTGCAAACAAC-GATACAGATGAATGTGCTAGAACTTATTGAGTGaaaaaa
s panTro5.chr6             29791257 78 + 175400573 ataagcagcataaatagaaggatcatacctgcaaacaac-aatacggatgaatgtgctagaacctattgagtgaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30025901 78 + 173848474 ataagcagcataaatagaaggatcatacctgcaaacaac-aatacggatgaatgtgctagaacctattgagtgaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5829283 78 +   6154872 ATAAGCAGCATAAATAGAAGGATCATACCTGCAAACAAC-AATACGGATGAATGTGCTAGAACCTACTGAGTGaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74555466 78 + 122973662 ATAAGTGGCATAAATAGAAGGATCATACCTGCAAACAAC-AATGCGGATGAATGTGCTAGAACCTATTGAGTGAAAACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30021410 76 + 172585720 ATAAGCAGCATAAATAGAAGAATTATCC--GTGAACAAC-AATGTGGATGAATGTGCTAGAACGTATTGAGTGaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29685309 76 - 170955103 ATAAGCAGCATAAATAGAAGAATTATCC--GTGAACAAC-AATGTGGATGAATGTGCTAGAACGTATTGAGTGaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2731451 76 -   2996164 ATAAGCAGCATAAATAGAAGAATTATCC--GTGAACAAC-AATGTGGATGAATGTGCTAGAACGCATTGAGTGaaaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     482224 78 +    766320 ATAAGCAGCATAAATAGAAGGATTATCCCTGTGAACAAC-AATGTGGATGAATGTGCTAGAACGTATTGAGTGaaaaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28939936 78 -  71996105 ATAAGCAGCATAAATAGAAGGATTATCCCTGTGAACAAC-AATGTGGATGAATGTGCTAGAACGTATTGAGTGaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     116145 78 +    290775 ATAAGCAGCATAAATAGAAGGATTATCCCTGTGAACAAC-AATGTGGATGAATGTGCTAGAACGTATTGAGTGaaaaaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2563723 78 -   3067355 ATAAGCAGCATAAATAGAAGGATTATCCCTGTGAACAAC-AATGTGGATGAATGTGCTAGAACGTATTGAGTGaaaaaa
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550            44244 74 +  18854210 atcagcagagtaaacggatagatta-----gaaaaggactaatgtggatgaatgtgttaaagcctactgagtaaaaaaa
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57798333 71 -  94987271 I
e proCoq1.NW_012152574v1     516701 88 +    730504 I
e saiBol1.JH378357           168724 86 -    242197 I
e aotNan1.NW_018509740v1     238261  3 -    457564 I
e cebCap1.NW_016107755v1     162939 91 -   1771730 I

a score=3061080.000000
s hg38.chr6_GL000254v2_alt   828510 571 +   4827813 gtgttagaaacaaatgcttattccacggtgccgcaaagaaatagcactcagacataaattcaattttctcagcaaggaatttttacttctatagaagggtgtgactcgcggatggagtaatggcaagagcatacctggacaagggaggggaaggagttcttattcctgaggcaggtagcccctactgctgtgtcgttcccctattggctaggtttggaccacacaatctaagctaattccgattggctattttaaagagagcaggggtatgagccagagcggcagggtgggtagtttggtgggaagggtggttacagaacaggtgactcaggatgattcaaatcaaagcaggtggccgagggtgactccggatggagcaggtgaccaggggaacagatatgaaccactgattagaactgacaggaaagttgtttactgaaactagaggcaagagggtgaagagaacccggaagctcaactttcaaatggagaatcaaagaataagagagatgaatatgctgacatactgattctttgaagagaatcttggagttcactatatctaacaaaa
s panTro5.chr6             29791335 571 + 175400573 gtgttagaaacaaatgcttattccacggtgccgcaaagaaatagcactcagacataaatttaattttcttagcaaggaatttttacttctatagaagggtgcgactcgcggatggagtaatggcaagagcatatctggacaagggaggggaaggagttcttattcctgaggcaggtagcccctactgctgtgtcattcccctattggctaggtttggaccacacaatctaagctaattccgattggctattttaaagagagcatgggtatgagccagagtggcagggtgggtagtttggtgggaagggtggttacagaacaggtgactcaggatgattcaagtcaaagcaggtggccaagggtgactccggatggagcaggtgaccaggagaacagatatgaactactgattagaactgacaggaaagttgtttactgaaactagaggcaagagggtgaagagaacccggaagctcaactttcaaatggagaatcaaagaataagagagatgaatatgctgacatactgattctttgaagagaatcttggagttcactacatctaacaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30025979 571 + 173848474 gtgttagaaacaaatgcttattccacggtgccgcaaagaaatagcactcagacataaatttaattttctcagcaaggaatttttacttctatagaagggtgcgactcgcggatggagtaatggcaagagcatatctggacaagggaggggaaggagttcttattcctgaggcaggtatcctctattgctgtgtcattcccctattggctaggtttggaccacacaatctaagctaattccgattggctattttaaagagagcatgggtatgagccagagtggcagggtgggtagtttggtgggaagggtggttacagaacaggtgactcaggatgattcaagtcaaagcaggtggccaagggtgactccggatggagcaggtgaccaggggaacagatatgaactactgattagaactgacaggaaagttgtttactgaaactagaggcaagagggtgaagagaacccggaagctcaactttcaaatggagaatcaaagaataagagagatgaatatgctgacatactgattctttgaagagaatcttggagttcactacatctaacaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5829361 571 +   6154872 gtgttagaaacaaatgcttattccacggtgccgcaaagaaatagcactcggacataaatttaattttctcagcaaggaatttttacttctatagaagggtgtgactcgcggatggagtaacggcaagagcacacctggacaagggaggggaaggagttcttattcctgaggcaggtagcccctactgctgtgtcattcccctattggctaggtttggaccacacaatctaagctaattccgattggctattttaaagagagcaggggtatgagccagagtggcagggtgggtagtttggtgggaagggtggttacagaacaggtgactcaggatggttcaagtcaaagcaggtggccaagggtgactccggatggagcaggtgaccaggggaacagatatgaactactgattagaactgacaggaaagttgtttactgaaactagaggcaagagggtgaagagaacccggaagctcaactttcaaatggagaatcaaagaatgagagagatgaatatgctgacatactgattctttgaagagaatcttggagttcactacatctaacaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74555544 570 + 122973662 GTGTTAGAAACAAATGCTTATTCTGcggtgctgcaaagaaatagcactcagacaaaaatttaattttctcagcaaggaatttttacttctatagaagggtgcgactcacggatggagtaacggcaagagcacacctggacaagggagggg-aggagttcttattcctgagggaggtagcccctactgctgtgtcgttctggtattggctaggtttggactgcacagtctaagctaattccgattggctattttaaagagagcaggggtatgagccggagtggcagggtgggtagtcgggctggaagggcggttacagaacaggtgactcaggatgattcaagtcaaagcaggtggccagaggtgactcaggatggagcaggtgaccaggggagcagatatgaactactgattagaactgacaggaaagttgtttactgaaactagaggcaagagggtgaagagaacccggaagctcaactttcaaatggagaatcaaagaataagagagatgaatatactgacatactgattctttgaagagaaacttggagttcactatatctaacaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30021486 537 + 172585720 gttttagaaacaaatgcgtattccgcagtgctgcaaagaaatagcactcagacataaatttaattttctcagcaaggaatttttacttctatagaagggtgagactcgcaaattgagtaatggcaagagcacacctggacaagggaggggaaggagttcttattcctgaggcaggtagcccctactgctgtgtcgttcccctattggctaggtttggaccgcacaatctaagctaattccgattggctattttaaagagcgcaggggtatgagccggagtggcatggcgggtagtttggcgggaagggcggttacagaacaggtaactcaggatgattcacgtcaaagcaggtggccaggggtgactcacgatggagcaggtgaccaggggaacagatgtgaactactgattagaactgacaggaaagttgtttactgaaactagaggcaagagggtgaagagaacccggaagttcaactttaaaatcgagaatcaaagagta----------------------------------aagagcACCTTGGAGTTCACTATATCTAATaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29685385 537 - 170955103 gttttagaaacaaatgcgtattccgcagtgctgcaaagaaatagcactcagacataaatttaattttctcagcaaggaatttttacttctatagaagggtgagactcgcaaattgagtaatggcaagagcacacctggacaagggaggggaaggagttcttattcctgaggcaggtagcccctactgctgtgtcgttcccctattggctaggtttggaccgcacaatctaagctaattccgattggctattttaaagagcgcaggggtatgagccggagtggcatggtgggtagtttggcgggaagggcggttacagaacaggtaactcaggatgattcacgtcaaagcaggtggccaggggtgactcacgatggagcaggtgaccaggggaacagatgtgaactactgattagaactgacaggaaagttgtttactgaaactagaggcaagagggtgaagagaacccggaagttcaactttaaaatcgagaatcaaagagta----------------------------------aagagcaccttggagttcactatatctaataaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2731527 537 -   2996164 gttttagaaacaaatgcgtattcctcagtgctgcaaagaaatagcactcagacataaatttaattttctcagcaaggaatttttacttctatagaagggtgagactcgcaaattgagtaatggcaagagcacacctggacaagggaggggaaggagttcttattcctgaggcaggtagcccctactgctgtgtcgttcccctattggctaggtttggaccgcacaatctaagctaattccgattggctattttaaagagcgcaggggtatgagccggagtggcatggtggctagtttggcgggaagggcggttacagaacaggtaactcaggatgattcacgtcaaagcaggtggccaggggtgactcacgatggagcaggtgaccaggggaacagatgtgaactactgattagaactgacaggaaagttgtttactgaaactagaggcaagagggtgaagagaacccggaagttcaactttaaaatcgagaatcaaagagta----------------------------------aagagcACCTTGGAGTTCACTATATCTAATaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     482302 537 +    766320 gttttagaaacaaatgcgtattccgcagtgctgcaaagaaatagcactcagatataaatttaattttctcagcaaggaatttttacttctatagaagggtgagactcgcaaattgagtaatggcaagagcacacctggacaaaggaggggaaggagttcttattcctgaggcaggtagcccctactgctgtgtcgttcccctattggctaggtttggaccgcacaatctaagctaattccgattggctattttaaagagagcagggatatgagccggagtggcatggtgggtagtttggcaggaagggcggttacagaacaggtaactcaggatgattcacgtcaaagcaggtggccagggctgactcagggtggagcaggtgatgaggggaacagatgtgaactactgattagaactgacaggaaagttgtttactgaaactagaggcaagagggtgaagagaacccggaagttcaactttaaaatcgagaatcaaagagta----------------------------------aagagcACCTTGGAGTTCACTATATCTAATaaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28940014 529 -  71996105 gttttagaaacaaatgcgtattccgcagtgctgcaaagaaatagcactcagacataaatttaattttctcagcaaggaatttttacttctatagaagggtgagactcgcaaattgagtaatggcaagagc--------acaagggagtggaaggagttcttattcctgaggcaggtagcccctactgctgtgtcgttcccctattggctaggtttggaccgcacaatctaagctaattccgattggctattttaaagagagcaggggtatgagccggagtggcatggtgggtagttcggcgggaagggcggttacagaacaggtaactcaggatgattcacatcaaagcaggtggccaggagcgactcacgatggagcaggtgaccaggggaacagatgtgaactactgattagaactgacaggaaagttgtttactgaaactagaggcaagagggtgaagagaacccggaagttcaactttaaaatcgagaatcaaagagta----------------------------------aagagcaccttggagttcactatatctaataaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     116223 537 +    290775 gttttagaaacaaatgcgtattccgcagtgctgcaaagaaatagcactcagacataaatttaattttctcagcaaggaatttttacttctatagaagggtgagactcgcaaattgagtaatggcaagagcacacctggacaaaggaggggaaggagttcttattcctgaggcaggtagcccctactgctgtgtcgttcccctattggctaggtttggaccgcacaatctaagctaattccgattggctattttaaagagagcagggatatgagccggagtggcatggtgggtagtttggcaggaagggcggttacagaacaggtaactcaggatgattcacgtcaaagcaggtggccagggctgactcaggatggagcaggtgatgagaggaacagatgtgaactactgattagaactgacaggaaagttgtttactgaaactagaggcaagagggtgaagagaacccggaagttcaactttaaaatcgagaatcaaagagta----------------------------------aagagcACCTTGGAGTTCACTATATCTAATaaaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2563801 537 -   3067355 gttttagaaacaaatgcgtattctgcagtgctgcaaagaaatagcactcagacataaatttaattttctcagcaaagaatttttacttctatagaagggtgagactcgcaaattgagtaatggcaagagcacacctggacaagggaggggaaggagttcttattcctgagacaggtagcccctactgctgtgtcgttcccctattggctaggtttggaccgcacaatctaagctaattccgattggctattttaaagagagcaggggtatgagccagagtggtatggtgggtagtttggcaggaagggtggttacagaacaggtaactcaggatgattcaagtcaaagcaggtggccaggggtgactcaggatggagcagatgaccaggggaacagatgtgaactactgataagaactgacaggaaagttgtttactgaaactagaggcaagagggtgaagagaacccggaagttcaactttaaaatcgaggatcaaagagta----------------------------------aagagcACCTTGGAGTTCACTACATCTAATAAAA
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57798333  71 -  94987271 I
e proCoq1.NW_012152574v1     516701  88 +    730504 I
e saiBol1.JH378357           168724  86 -    242197 I
e otoGar3.GL873550            44318   0 +  18854210 C
e aotNan1.NW_018509740v1     238261   3 -    457564 I
e cebCap1.NW_016107755v1     162939  91 -   1771730 I

a score=69273.000000
s hg38.chr6_GL000254v2_alt   829081 11 +   4827813 gcaagatgagt
s panTro5.chr6             29791906 11 + 175400573 gcaagatgagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30026550 11 + 173848474 gcaagatgagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5829932 11 +   6154872 gcaagatgagt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74556114 11 + 122973662 gcaagatgagt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30022023 11 + 172585720 gcaagatgaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29685922 11 - 170955103 gcaagatgaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2732064 11 -   2996164 gcaagatgaat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     482839 11 +    766320 gcaagatgaat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28940543 11 -  71996105 gcaagatgaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     116760 11 +    290775 gcaagatgaat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2564338 11 -   3067355 GCAAGATGAAT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550            44318 11 +  18854210 gcaagaccagg
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57798333 71 -  94987271 I
e proCoq1.NW_012152574v1     516701 88 +    730504 I
e saiBol1.JH378357           168724 86 -    242197 I
e aotNan1.NW_018509740v1     238261  3 -    457564 I
e cebCap1.NW_016107755v1     162939 91 -   1771730 I

a score=157674.000000
s hg38.chr6_GL000254v2_alt   829092 24 +   4827813 aagactacataaagtatg--------------------------------------------------atactc
s panTro5.chr6             29791917 24 + 175400573 aagactacataaagtatg--------------------------------------------------atactc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30026561 24 + 173848474 aagactacataaagtatg--------------------------------------------------atactc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5829943 24 +   6154872 aagactacataaagtatg--------------------------------------------------atactc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74556125 24 + 122973662 aagactacataaagtatg--------------------------------------------------atactc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30022034 24 + 172585720 aagactacataaagtatg--------------------------------------------------atactc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29685933 24 - 170955103 aagactacataaagtatg--------------------------------------------------atactc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2732075 24 -   2996164 aagactacataaagtatg--------------------------------------------------atactc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     482850 24 +    766320 aagactacataaagtatg--------------------------------------------------atactc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28940554 24 -  71996105 aagactacataaagtatg--------------------------------------------------atactc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     116771 24 +    290775 aagactacataaagtatg--------------------------------------------------atactc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2564349 74 -   3067355 AAGACTACATAAAGTATGATACTCTCCATAATACTCAATATTTACTCATAATATTTATGGAGAGTATAATACTC
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     516789 23 +    730504 aagactgcataa-atatg--------------------------------------------------atactc
i proCoq1.NW_012152574v1   I 88 C 0
s otoGar3.GL873550            44329 24 +  18854210 aagacgacagaacgtatg--------------------------------------------------atcccc
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57798333 71 -  94987271 I
e saiBol1.JH378357           168724 86 -    242197 I
e aotNan1.NW_018509740v1     238261  3 -    457564 I
e cebCap1.NW_016107755v1     162939 91 -   1771730 I

a score=288954.000000
s hg38.chr6_GL000254v2_alt   829116 44 +   4827813 tccataaatctcaaaagcaagcaaaactaCATAGTGAGACAGAG
s panTro5.chr6             29791941 44 + 175400573 tccataaatctcaaaagcaagcaaaactaCATAGTGAGACAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30026585 44 + 173848474 tccataaatctcaaaagcaagcaaaactaCATAGTGAGACAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5829967 44 +   6154872 tccataaatctcaaaagcaagcaaaactacatagtGAGACAGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74556149 44 + 122973662 tccataaatctcaaaagcaagcaaaactaCATAGTGAGACAGAG
i nomLeu3.chr1a            C 0 I 313
s rheMac8.chr4             30022058 43 + 172585720 cccataaatctcaaaagcaagcaaaactaCATAGTGAGACGAG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29685957 43 - 170955103 cccataaatctcaaaagcaagcaaaactaCATAGTGAGACGAG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2732099 43 -   2996164 cccataaatctcaaaagcaagcaaaactaCATAGTGAGACGAG-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     482874 43 +    766320 cccataaatctcaaaagcaagcaaaactaCATAGTGAGACGAG-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28940578 43 -  71996105 cccataaatctcaaaagcaagcaaaactaCATAGGGAGACGAG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     116795 43 +    290775 cccataaatctcaaaagcaagcaaaactaCATAGTGAGACGAG-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2564423 43 -   3067355 TCCATAAATCTCAAAAGCAAGCAAAACTACATAGTGAGACGAG-
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     516812 44 +    730504 tttataaatctcaaaaataagcaaaactacatagagagacagag
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            44353 31 +  18854210 ttt-------------ataagcaaaactacacaGAGAGACAGAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57798404 42 -  94987271 TTTATAGATCTCAAAACCAAGCAAACTATCCCAGGAACAGAG--
i mm10.chr17               I 71 C 0
e saiBol1.JH378357           168724 86 -    242197 I
e aotNan1.NW_018509740v1     238261  3 -    457564 I
e cebCap1.NW_016107755v1     162939 91 -   1771730 I

a score=859392.000000
s hg38.chr6_GL000254v2_alt   829160 106 +   4827813 AAAAAGAGGAACTAC-TTGAAATTCAGGATATGTCTGCTTTTTAACAAAAATGAAGCCCAATCTAAATTTTGATATAAGCTACTTGAAGGAGATTTTCAACAGGAAG
s panTro5.chr6             29791985 106 + 175400573 AAAAAGAGGAACTAC-TTGAAATTCAGGATATGTCTGCTTTTTAACAAAAATGAAGCCCAATCTAAATGCTGATATAAGCTACTTGAAGGAAATTTTCAACAGGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30026629 106 + 173848474 AAAAAGAGGAACTAC-TTGAAATTCAGGATATGTCTGCTTTTTAACAAAAATGAAGCCCAATCTAAATGCTGATATAAGCTACTTGAAGGAAATTTTCAACAGGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5830011 106 +   6154872 AAAAAGAGGAACTAC-TTGAAATTCAGGATATGTCTGCTTTTTAACAAAAATGAAGCCCAATCTAAATGCTGATATAAGCTACTTGAAGGAGATTTTCAACAGGAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74556506 104 + 122973662 aaaaaGAGGAACTACTTTGAAATTCAGGATATGTCTGCTTTTTAACGAAAATGAAGCCCAATCTAAATGCTGATATAAGCTACTTGAAGGAGATTTTCAACAGG---
i nomLeu3.chr1a            I 313 C 0
s rheMac8.chr4             30022101 107 + 172585720 AAAAAGAGGAACTACTTTGAAATTCAGGATATGTCTGCTTTTTAACAAAAATGAAGCCCAATCTAAATGCTGATATGAGCTACTTGAAGGAGATTTTCAACAGGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29686000 107 - 170955103 AAAAAGAGGAACTACTTTGAAATTCAGGATATGTCTGCTTTTTAACAAAAATGAAGTCCAATCTAAATGCTGATACGAGCTACTTGAAGGAGATTTTCAACAGGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2732142 107 -   2996164 AAAAAGAGGAACTACTTTGAAATTCAGGATATGTCTGCTTTTTAACAAAAATGAAGTCCAATCTAAATGCTGATACGAGCTACTTGAAGGAGATTTTCAACAGGAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     482917 107 +    766320 AAAAAGAGGAACTACTTTGAAATTCAGGATATGTCTGCTTTTTAACAAAAATGAAGCCCAATCTAAATGCTGATATGAGCTACTTGAAGGAGATTTTCAACAGGAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28940621 107 -  71996105 AAAAAGAGGAACTACTTTGAAATTCAGGATATGTCTGCTTTTTAACAAAAATGAAGCCCAATCTAAATGCTGATACGAGCTACTTGAAGGAGATTTTCAACAGGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     116838 107 +    290775 AAAAAGAGGAACTACTTTGAAATTCAGGATATGTCTGCTTTTTAACAAAAATGAAGCCCAATCTAAATGCTGATATGAGCTACTTGAAGGAGATTTTCAACAGGAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2564466 107 -   3067355 AAAAAGAGGAACTACTTTGAAATTCAGGATATGTCTGCTTTTTAACAAAAATGAAGCCCAATCTAAATGCTGATATGAGCTACTTGAAGGAGATTTTCAACAGAAAG
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     516856 106 +    730504 aaAGAGAG-AACTACTTTGAAATTCAGGGTATGTTTGCTTTTTAACGGAAATGAAGCCCAGTCTAAATGCTGATATAAATTACTTGAAGGAGATTTTAAACAGAAAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            44384 106 +  18854210 AAAGAGAGAAACTACTTTGAAATTCAGGGTATGTTTGCTTTTTGACAGAACC-AAGCTCAATCTCAATGCTGATATGAACTACATAAAGGAGATTTTCAGGGGGCAG
i otoGar3.GL873550         C 0 I 11525
s mm10.chr17               57798446  98 -  94987271 AAAAGGAGGAAATATTCTGAAATTCAGGATATGTTCAC---CTAACAGAAATAAAGCTGAATCTAAATGC---TATGAGTTACTTGAAAG---TATTTAAGAGGAAA
i mm10.chr17               C 0 C 0
e saiBol1.JH378357           168724  86 -    242197 I
e aotNan1.NW_018509740v1     238261   3 -    457564 I
e cebCap1.NW_016107755v1     162939  91 -   1771730 I

a score=108558.000000
s hg38.chr6_GL000254v2_alt   829266 19 +   4827813 TAAGAGGGCATTAGAAGCC---
s panTro5.chr6             29792091 19 + 175400573 TAAGAGGGCATTAGAAGCC---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30026735 19 + 173848474 TAAGAGGGCATTAGAAGCC---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5830117 19 +   6154872 TAAGAGGGCATTAGAAGCC---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74556610 18 + 122973662 -AAGAGGGCATTAGAAGCC---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30022208 19 + 172585720 TAAGAGGGCATTAGAAGCC---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29686107 19 - 170955103 TAAGAGGGCATTAGAAGCC---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2732249 19 -   2996164 TAAGAGGGCATTAGAAGCC---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     483024 19 +    766320 TAAGAGGGCATTAGAAGCC---
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28940728 19 -  71996105 TAAGAGGGCATTAGAAGTC---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     116945 19 +    290775 TAAGAGGGCATTAGAAGCC---
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2564573 19 -   3067355 TAAGAGGGCATTAGAAGGC---
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     516962 17 +    730504 --TAAGGCCTTTAGGACCC---
i proCoq1.NW_012152574v1   C 0 I 2
s mm10.chr17               57798544 19 -  94987271 ---TGTGACCCTCACAGTCACA
i mm10.chr17               C 0 C 0
e saiBol1.JH378357           168724 86 -    242197 I
e otoGar3.GL873550            44490 11525 +  18854210 I
e aotNan1.NW_018509740v1     238261  3 -    457564 I
e cebCap1.NW_016107755v1     162939 91 -   1771730 I

a score=767675.000000
s hg38.chr6_GL000254v2_alt   829285 107 +   4827813 CTGATATTATTTCATCTTGCCATATTCAG----AATCTGAAGT--TTAACCAAGAGAACTTAATGTTTGTTAAAGCAATTTATTACTTGAGAGACATACCGTATATTCACTTT-
s panTro5.chr6             29792110 107 + 175400573 CTGATATTATTTCATCTTGCCATATTCAG----AATCTGAAGT--TTAACCAAGAGAACTTAATGTTTGTTAAAGCAATTTATTACTTGAGAGACATACTGTATATTCACTTT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30026754 107 + 173848474 CTGATATTATTTCATCTTGCCATATTCAG----AATCTGAAGT--TTAACCAAGAGAACTTAATGTTTGTTAAAGCAATTTATTACTTGAGAGACATACTGTATATTCACTTT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5830136 107 +   6154872 CTGATATTATTTCATCTTGCCATATTCAG----AATCTGAAGT--TTAACCAAGAGAACTTAATGTTTGTTAAAGCAATTTATTACTTGAGAGACATACTGTATATTCACTTT-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74556628  93 + 122973662 CTCATATTAT--------------TTCAG----AATCTGAAGT--TTAACCAAGAGAATTTAATGTTTGTTAAAGCAATTTATTTCTTGAGAGACACACTGTATATTCACTTT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30022227 107 + 172585720 CTGATATTATTTCATCTTGCCATATTCAG----AATCTGAAAT--TTAACCAAGAGAACTTAATGTTTGTTAAAGAAATGTATTACTTGACAGACATATTGTATATTCACTTT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29686126 107 - 170955103 CTGATATTATTTCATCTTGCCATATTCAG----AATCTGAAAT--TTAACCAAGAGAACTTAATGTTTGTTAAAGAAATGTATTACTTGACAGACATATTGTATATTCACTTT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2732268 107 -   2996164 CTGATATTATTTCATCTTGCCATATTCAG----AATCTGAAAT--TTAACCAAGAGAACTTAATGTTTGTTAAAGAAATGTATTACTTGACAGACATATTGTATATTCACTTT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     483043 107 +    766320 CTGATATTATTTCATCTTGCCATATTCAG----AATCTGAAAT--TTAACCAAGAGAACTTAATGTTTGTTAAAGAAATGTATTACTTGACAGACATATTGTATATTCACTTT-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28940747 107 -  71996105 CTGATATTATTTCATCTTGCCATATTCAG----AATCTGAAAT--TTAACCAAGAGAACTTAATGTTTGTTAAAGAAATGTATTACTTGACAGACATATTGTATATTCACTTT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     116964 107 +    290775 CTGATATTATTTCATCTTGCCATATTCAG----AATCTGAAAT--TTAACCAAGAGAACTTAATGTTTGTTAAAGAAATGTATTACTTGACAGACATATTGTATATTCACTTT-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2564592 103 -   3067355 CTGATATTATTTCATCTTGCCATATTCAG----AATCTCAAAT--TTAACCAAGAGAACTTAATGTTT----AAGAAATGTATTACTTGACAGACATACTGTATATTCACTTT-
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     238264 103 -    457564 CTGATACTATTTCATCTTGCCATATTCAG----AATCTAAAGT--TTAACGAAGAGAACTTAATGTTTGTTAAAGCAACTTATTACTTGAGAGACATGACGCAT----ACTTT-
i aotNan1.NW_018509740v1   I 3 C 0
s proCoq1.NW_012152574v1     516981 107 +    730504 CTGATGTGATCACTTGTTGTCATATTTGG----AATCTTAAGT--TTAACCATGAGAACTTAATACTCGTTAAAGCAATTTATTACTTAAGAGACATAATGCATATTCATTTT-
i proCoq1.NW_012152574v1   I 2 I 13
s mm10.chr17               57798563 105 -  94987271 CTGACATT-TTTTGTCTTCC---ATTCAGAGATAAGCTACTGCTATTAGCCA----AATTTAATTTTT-TTAAAGTAGTTTATTCCTTAAGAGATACAAGATGCACTTAATTCT
i mm10.chr17               C 0 C 0
e saiBol1.JH378357           168724  86 -    242197 I
e otoGar3.GL873550            44490 11525 +  18854210 I
e cebCap1.NW_016107755v1     162939  91 -   1771730 I

a score=89947.000000
s hg38.chr6_GL000254v2_alt   829392 11 +   4827813 ATTAAAGGTAA
s panTro5.chr6             29792217 11 + 175400573 ATTAAAGGTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30026861 11 + 173848474 ATTAAAGGTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5830243 11 +   6154872 ATTAAAGGTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74556721 11 + 122973662 ATTAAAGGTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30022334 11 + 172585720 ATTAAAGGTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29686233 11 - 170955103 ATTAAAGGTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2732375 11 -   2996164 ATTAAAGGTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     483150 11 +    766320 ATTAAAGGTAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28940854 11 -  71996105 ATTAAAGGTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     117071 11 +    290775 ATTAAAGGTAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2564695 11 -   3067355 ATTAAAGGTAA
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     238367 11 -    457564 ATTAAAGGTAA
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57798668 11 -  94987271 ATTATAGGTAA
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     517088 13 +    730504 I
e saiBol1.JH378357           168724 86 -    242197 I
e otoGar3.GL873550            44490 11525 +  18854210 I
e cebCap1.NW_016107755v1     162939 91 -   1771730 I

a score=24487.000000
s hg38.chr6_GL000254v2_alt   829403 3 +   4827813 AGT
s panTro5.chr6             29792228 3 + 175400573 AGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30026872 3 + 173848474 AGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5830254 3 +   6154872 AGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74556732 3 + 122973662 AGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30022345 3 + 172585720 AGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29686244 3 - 170955103 AGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2732386 3 -   2996164 AGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     483161 3 +    766320 AGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28940865 3 -  71996105 AGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     117082 3 +    290775 AGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2564706 3 -   3067355 AGT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           168810 3 -    242197 aac
i saiBol1.JH378357         I 86 C 0
s aotNan1.NW_018509740v1     238378 3 -    457564 AGT
i aotNan1.NW_018509740v1   C 0 I 442
s mm10.chr17               57798679 3 -  94987271 AAT
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     517088 13 +    730504 I
e otoGar3.GL873550            44490 11525 +  18854210 I
e cebCap1.NW_016107755v1     162939 91 -   1771730 I

a score=13575.000000
s hg38.chr6_GL000254v2_alt   829406 2 +   4827813 -AA
s panTro5.chr6             29792231 2 + 175400573 -AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30026875 2 + 173848474 -AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5830257 2 +   6154872 -AA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74556735 2 + 122973662 -AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30022348 2 + 172585720 -AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29686247 2 - 170955103 -AA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2732389 2 -   2996164 -AA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     483164 2 +    766320 -AA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28940868 2 -  71996105 -AA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     117085 2 +    290775 -AA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2564709 2 -   3067355 -AA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           168813 2 -    242197 -aA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     163030 2 -   1771730 -AA
i cebCap1.NW_016107755v1   I 91 C 0
s aotNan1.NW_018509740v1     238823 2 -    457564 -AA
i aotNan1.NW_018509740v1   I 442 C 0
s mm10.chr17               57798682 2 -  94987271 TA-
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     517088 13 +    730504 I
e otoGar3.GL873550            44490 11525 +  18854210 I

a score=321181.000000
s hg38.chr6_GL000254v2_alt   829408 33 +   4827813 TAATATCTAAAACAAATGTTCCAAAGAAAACTA
s panTro5.chr6             29792233 33 + 175400573 TAATATCTAAAACAAATGTTCCAAAGAAAACTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30026877 33 + 173848474 TAATATCTAAAACAAATGTTCCAAAGAAAACTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5830259 33 +   6154872 TAATATCTAAAACAAATGTTCCAAAGAAAACTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74556737 33 + 122973662 TATTATCTAAAACAAATGTCCCAAAGaaaaata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30022350 33 + 172585720 TATTATCTAAAACAAATGTTCCAAAGAAAAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29686249 33 - 170955103 TATTATCTAAAACAAATGTTCCAAAGAAAAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2732391 33 -   2996164 TATTATCTAAAACAAATGTTCCAAAGAAAAATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     483166 33 +    766320 TATTATCTAAAACAAATGTTCGAAAGAAAAATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28940870 33 -  71996105 TATTATCTAAAACAAATGTTCCAAAGAAAAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     117087 33 +    290775 TATTATCTAAAACAAATGTTCCAAAGAAAAATA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2564711 33 -   3067355 TATTATCTAAAACAAATGTTCCAAAGAAAAATA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           168815 33 -    242197 TATTATCTAAAACAAATGTTTTCAAGAAAAATA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     163032 29 -   1771730 TATTATCTAAAACAAATGTTTTCAAGAA----A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     238825 33 -    457564 TATTATCTAAAACAAATGTTTTCAAGAAAAATA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     517101 33 +    730504 TACTGTCTAAAACAAATGCTCTAAAGGGAAATA
i proCoq1.NW_012152574v1   I 13 C 0
s mm10.chr17               57798684 31 -  94987271 --TGCTTTAAAACAAATATTCCAAAGTGAAGTT
i mm10.chr17               C 0 C 0
e otoGar3.GL873550            44490 11525 +  18854210 I

a score=441759.000000
s hg38.chr6_GL000254v2_alt   829441 39 +   4827813 AACATAAGCAAA---ACTG---AATATAGTATCTAGAACTACATA
s panTro5.chr6             29792266 39 + 175400573 AACATAAGCAAA---ACTG---AATATAGTATCTAGAACTACATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30026910 39 + 173848474 AACATAAGCAAA---ACTG---AATATAGTATCTAGAACTACATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5830292 39 +   6154872 AACATAAGCAAA---ACTG---AATATAGTATCTAGAACTACATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74556770 39 + 122973662 aacataagcaaa---acta---aatataGTATCTAGAACTACGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30022383 39 + 172585720 AGCATAAGCAAC---ACTG---AATATAGCATCTAAAACTACATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29686282 39 - 170955103 AACATAAGCAAA---ACTG---AATATAGTATCTAAAACTACATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2732424 39 -   2996164 AACATAAGCAAA---ACTG---AATATAGTATCTAAAACTACATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     483199 39 +    766320 AACATAAGCAAA---ACTG---AATATAGTATCTAGAACTATATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28940903 39 -  71996105 AACATAAGCAAA---ACTG---AATATAGTATCTAAAACTACATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     117120 39 +    290775 AACATAAGCAAA---ACTG---AATATAGTATCTAGAACTACATA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2564744 39 -   3067355 AACATAAGCAAA---ACTG---AATATAGTATCTAGAACTACATA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           168848 39 -    242197 AACATAAGCAAA---ACTG---AATATAGTATCTAGAACTACATA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     163061 39 -   1771730 AACATAAGCAAA---ACTG---AATATAGTATCTAGAACTACTTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     238858 39 -    457564 AACATAAGCAAA---ACTG---ACTATAGTATCTAGAACTACGTA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     517134 42 +    730504 AACATAAGCAAA---ACTGAGCAACATAGTACTTAAAACCACATA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            56015 42 +  18854210 AACATAAGCAAA---ATTGAGCAATGTAATACTTAAAAATATACA
i otoGar3.GL873550         I 11525 C 0
s mm10.chr17               57798715 41 -  94987271 ATCACAGGCTAATTGACT----AATATAACATTTTGGACCACATA
i mm10.chr17               C 0 I 2293

a score=58576.000000
s hg38.chr6_GL000254v2_alt   829480 6 +   4827813 TGTAAG
s panTro5.chr6             29792305 6 + 175400573 TGTAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30026949 6 + 173848474 TGTAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5830331 6 +   6154872 TGTAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74556809 6 + 122973662 TGTAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30022422 6 + 172585720 TGTAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29686321 6 - 170955103 TGTAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2732463 6 -   2996164 TGTAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     483238 6 +    766320 TGTAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28940942 6 -  71996105 TGTAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     117159 6 +    290775 TGTAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2564783 6 -   3067355 TGTAAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           168887 6 -    242197 CGTAAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     163100 6 -   1771730 TGTAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     238897 6 -    457564 TGTAAA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     517176 6 +    730504 TGGAAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            56057 6 +  18854210 GGGAAG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57798756 2293 -  94987271 I

a score=1482127.000000
s hg38.chr6_GL000254v2_alt   829486 160 +   4827813 TAATAAGGCTCTTATAAAAATGTAAAAACCATGAGTGTTCATTATGCTACTATTATGTTTTATAGTGTTACATTATATTATTCTATATGGGTTACATTTATTTATCTGTAGTATCAAAGATTATAATAAAAATATAATttaaaatttttcatgttcatat
s panTro5.chr6             29792311 150 + 175400573 CAATAAGGCTGTTATAAAAATGTGAAAAC----------CATTATGCTACTATTATGCTTTATAGTGTTACATTATACTGTTCTATATGGGTTACATTTATTTATCTGTAGCATCAAAGATTATAATAAAAATATAATttaaaatttttcatgttcatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30026955 150 + 173848474 CAATAAGGCTGTTATAAAAATGTGAAAAC----------CATTATGCTACTATTATGCTTTATAGTGTTACATTATACTGTTCTATATGGGTTACATTTATTTATCTGTAGCATCAAAGATTATAATAAAAATATAATttaaaatttttcatgttcatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5830337 150 +   6154872 CAATAAGACTGTTATAAAAATGTAAAAAC----------CATTATGCTACTATTATGCTTTATAGTGTTACATTATACTATTCTATATGGGTTACATTTATTTATCTGTAGTATCAAAGATTATAATAAAAATATAATttaaaatttttcatgttcatat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74556815 160 + 122973662 CAATAAGACTGTTATAAAAATGTAAAAACCATGAGTGTTCATTATGCTACTATTACGCTTTATAGTGTTACATTATATTATTCTATATGGATTACATTTATTTGTCTGTAGTATCAAAGATTATAATAAAaatatattttaaaatttttcatgttaatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30022428 159 + 172585720 CAATACGGCTGCTATAAAAATGTAAAAACCGTAAGTGTTCATTATGCTACTATTACACTTTATAGTGTTACATTATATTATTCTATATGCGTTATATTTATTTATCTGTGGTATCAAAGATTATAAT-AAAATATAATTTAAAACTTTTCatgttcatat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29686327 159 - 170955103 CAATACGGCTGCTATAAAAATGTAAAAACCGTAAGTGTTCATTATGCTACTATTACGCTTTATAGTGTTACATTATATTATTCTATATGCATTATATTTATTTATCTGTGGTATCAAAGATTATAAT-AAAATATAATTTAAAACTTTTCatgttcatat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2732469 159 -   2996164 CAATACGGCTGCTATAAAAATGTAAAAACCGTAAGTGTTCATTATGCTACTATTACGCTTTATAGTGTTACATTATATTATTCTATATGCATTATATTTATTTATCTGTGGTATCAAAGATTATAAT-AAAATATAATTTAAAACTTTTCatgttcatat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     483244 159 +    766320 CAATACGGCTGTTATAAAAATGTAAAAACCATAAGTGTTCATGATGCTACTATTATGCTTTATAGTGTTACATTATATTATTCTATATGCGTTATATTTATTTATCCGTGCTGTCAAAGATTATAAT-AAAATATAATTTAAAACTTTTCatgttcatac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28940948 159 -  71996105 CAATACGGCTGTTACAAAAATGTAAAAACCATAAGTGCTCattatgctactattatactttatagtgttacattatattattctatatgcattatatttatttatctgtggtatcaaagattataat-aaaatataATttaaaacttttcatgttcatat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     117165 159 +    290775 CAATACGGCTGTTATAAAAATGTAAAAACCATAAGTGTTCATGATGCTACTATTACGCTTTATAGTGTTACATTATATTATTCTATATGCGTTATATTTATTTATCCGTGCTGTCAAAGATTATAAT-AAAATATAATTTAAAACTTTTCatgttcatac
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2564789 159 -   3067355 CAATACGGCTGTTATAAAAATGTAAAAACCATAAGTGTTCATTATGCTACTATTACGCTTTATACTGTTACATTATATTATTCTATATGCGTTACATTTATTTATCTGTGGTATCAGAGATTATAAT-AAAATATAATTTAAAACTTTTCatgttcatat
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           168893 158 -    242197 CAATAA-ACTGTTATAAAAATGTAAAAACCATGACTATTCGTTACACTACT-TTATGCTTTATAGTGTTACATTATATTATCCTATATATGCCACATTTATTTATCTGTGATATCAAAAATTGGGACAAAAATATAATATAAaaattttcatattcatat
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     163106 153 -   1771730 CAATAA-ACTGTTATAAAAATGTAAAAACCATGACTATTCATTACACTACT-TTATGCTTTATAGTG-----TTATATTATCCCATATATGCTACATTTATTTATCTGTGATATCAAAAATTAGGATAAAAATATAATTTAAaaattttcatattcatat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     238903 158 -    457564 CAATAA-ACTGTTATAAAAATGTAAAAACCATGACTATTCATTACACTACT-TTATGCTTTATAGTGTTACATTATATTATCCTATATATGCTACATTTATTTATCTGTAATATCAAAAATTGGGATAAAAATATAATTTAAAAATTTTCATATTcatat
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     517182 143 +    730504 TAATAAAACTGTTATAAAAATGTAAAAACcatgagtattcatt---atactattatgctttatagc--------------ttacatatgtgttgcatttattcatctgtggtatcaaagtttgtgataaaaatataatttaaaatttttcatgtacatat
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            56063 146 +  18854210 TAATAAAATTCTTATAAAAATGTAAAAACCATGAGTATTCATTATGATATGATTGTGCCTTATAGT--------------TTACATATGTGTTACATTTATTTACCTGTGGTACCAAAGTTGGTGATAAAAAtataatttaaaaattttcatgtatatgt
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57801049 141 -  94987271 TAGTAATTATTTTTAAAGAAACTGAAAAGCATGTGTCTCCACTATATTACT---ACACTTTAAAGT--------------TTGTACACTTGTTGGGTGTCTTCCT-TGTGGTATCAAAGTTTATAATGAAAATA-AGTTTAAGTGTGTGTGTGTGtatat
i mm10.chr17               I 2293 I 65607

a score=535280.000000
s hg38.chr6_GL000254v2_alt   829646 45 +   4827813 cctctagctcagcaattctgcttctaggaacttatcctattagta
s panTro5.chr6             29792461 45 + 175400573 cctctagctcagcaattctgcttctaggaacttatcctattagta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30027105 45 + 173848474 cctctagctcagcaattctgcttctaggaacttatcctattagta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5830487 45 +   6154872 cctctagctcagcaattctgcttctaggaacttatcctattagta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74556975 45 + 122973662 cctctagctcagcaattctgcttctaggaacttatcctactagta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30022587 45 + 172585720 cctctagctcagcaattctgcttctaggaacttatcctattagta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29686486 45 - 170955103 tctctagctcagcaattctgcttctaggaacttatcctattagta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2732628 45 -   2996164 tctctagctcagcaattctgcttctaggaacttatcctattagta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     483403 45 +    766320 cctctagctcagcaattctgcttctaggaacttatcctattagta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28941107 45 -  71996105 cctctagctcagcaattctgcttctaggaacttatcctattagta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     117324 45 +    290775 cctctagctcagcaattctgcttctaggaacttatcctattagta
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2564948 45 -   3067355 cctctagctcagcaattctgcttctaggaatttatcctattagta
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           169051 45 -    242197 cctctagctcagcaattctatttctagggacttaccctattagta
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     163259 45 -   1771730 cctctagctcagcaattctgcttctaggaacttatcctattagta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     239061 45 -    457564 cctctagctcagcaattgtgcttctaggaacttaccctattagta
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     517325 45 +    730504 cctctaacccagtgattctgcttctaggaatgtatcctattagta
i proCoq1.NW_012152574v1   C 0 I 707
s otoGar3.GL873550            56209 45 +  18854210 cctctaacccagtaattctgcttctagaaatttatcctattagta
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57801190 65607 -  94987271 I

a score=10712.000000
s hg38.chr6_GL000254v2_alt   829691 4 +   4827813 c-tct
s panTro5.chr6             29792506 4 + 175400573 c-cct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30027150 4 + 173848474 c-cct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5830532 4 +   6154872 c-ccc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74557020 4 + 122973662 c-act
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30022632 4 + 172585720 c-aat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29686531 5 - 170955103 caatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2732673 4 -   2996164 c-act
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     483448 4 +    766320 c-act
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28941152 4 -  71996105 c-act
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     117369 4 +    290775 c-act
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2564993 4 -   3067355 c-act
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           169096 4 -    242197 c-aca
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     163304 4 -   1771730 c-aca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     239106 4 -    457564 c-aca
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            56254 4 +  18854210 t-att
i otoGar3.GL873550         C 0 I 121
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     517370 707 +    730504 I

a score=43191.000000
s hg38.chr6_GL000254v2_alt   829695 14 +   4827813 tttg---gttttttttt---
s panTro5.chr6             29792510 14 + 175400573 tttt---tttttttttt---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30027154 13 + 173848474 ttt----tttttttttt---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5830536 14 +   6154872 tttt---tttttttttt---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74557024 14 + 122973662 tttt---tttttttttt---
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             30022636 11 + 172585720 tttt---tttttta------
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29686536 11 - 170955103 tttt---tttttta------
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2732677 11 -   2996164 tttt---tttttta------
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012002711v1     483452 11 +    766320 tttt---tttttta------
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17            28941156 11 -  71996105 tttt---ttttttt------
i chlSab2.chr17            C 0 I 180
s manLeu1.NW_012099233v1     117373 11 +    290775 tttt---ttttttt------
i manLeu1.NW_012099233v1   C 0 I 2
s colAng1.NW_012115566v1    2564997 11 -   3067355 tttt---ttttttt------
i colAng1.NW_012115566v1   C 0 I 2
s saiBol1.JH378357           169100 14 -    242197 ttttgtttttttta------
i saiBol1.JH378357         C 0 I 1
s cebCap1.NW_016107755v1     163308 14 -   1771730 ttttggttttttta------
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018509740v1     239110 13 -    457564 ttttgg-tttttta------
i aotNan1.NW_018509740v1   C 0 I 1
s otoGar3.GL873550            56379 14 +  18854210 tttt---ttttttt---ctg
i otoGar3.GL873550         I 121 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     517370 707 +    730504 I

a score=3615138.000000
s hg38.chr6_GL000254v2_alt   829709 447 +   4827813 aaggagtatcactcttgcctcccagcctggaatgcaatggcgcgatctcggctcactgcaacctccgcctcctgggttcaagcgattctcctccctcagccttctgagcagctgggattgcagtcatgtgccaccatgcctggctattatttatttatttatttatttattatttttatttttagtagagatggggtttcagcatgctggccaggctggtctcgaactcctgacctcaggtgatccacctgcctccgcctcccaaagtgctggcattacaggtatgagccaccatgcctggccctattagtacacttatatatgtgtgaaataagccatgtacaagaatattcatgtgaaataattatttgcaactgaaataaatggg-aacaacacttatcaatagacaactaaataagtgctggtgtatacagttgaattaaattt---
s panTro5.chr6             29792524 439 + 175400573 aaggagtatcactcttgcctcccagcctggagtgcaatgacgcgatctcggctcactgcaacttccgcctcctgggttcaagcgattctcctccctcagccttctgagcagctgggattgcagtcatgtaccaccatgcctggctg--------ttatttatttatttattatttttatttttagtacagatggggtttcagcatgctggccaggctggtctcgaactcctgacctcaggtgatccgcctgcctccgcctcccaaagtgctggcattacaggtatgagccaccatgcctggccctactagtacacttatatatgtgtgaaataagccatgtacaagaatattcatgtgaaataattatttgcaactgaaataaatggg-aacaacacttatcaatagacaactaaataaatgctggtgtatacagttgaattaaattt---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30027167 439 + 173848474 aaggagtatcactcttgcctcccagcctggagtgcaatgacgcgatctcggctcactgcaacctccgcctcctgggttcaagcgattctcctccctcagccttctgagcagctgggattgcagtcatgtaccaccatgcctggctg--------ttatttatttatttattatttttatttttagtagagatggggtttcagcatgctggccaggctggtctcgaactcctgacctcaggtgatccacctgcctccgcctcccaaagtgctggcattacaggtatgagccaccatgcctggccctactagtacacttatatatgtgtgaaataagccatgtacaagaatattcatgtgaaataattatttgcaactgaaataaatggg-aacaacacttatcaatagacaactaaataaatgctggtgtatacagttgaattaaattt---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5830550 439 +   6154872 aaggagtatcactcttgcctcccagcctggagtgcaatggtgcgatctcggctcactgcaacctctgcctcctgggttcaagcgattctcctccctcagccttctgagcagctgggattgcagtcatgtaccaccatgcctggctg--------ttatttatttatttattatttttatttttagtagagatggggtttcagcatgctggccaggctggtctcgaactcctgacctcaggtgatccacctgcctccgcctcccaaagtgctggcattacaggtatgagccaccatgcctggccctactagtacacttatatatgtgtgaaataagccatgtacaagaatattcatgtgaaataattatctgcaactgaaataaatggg-aacaacacttatcaatagacaactaaataaatgctggtgtatacagttgaattaaattt---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74557039 443 + 122973662 aaggagtttcactcttgcctcccagcctggagtgcaatggcacaatctgggcttgctgtaacctccatctcctgggttcaagcaattctccttcctcagccttctgagtagctgggattgcagtcatgggccaccatgcctggcta----ttatttatttatttatttattatttttatttttagtagagatggggtttcagcatgttggccaggctggtgtcgaactcctgacctcaggtgatccgcctgcctcagcctcccaaagtgctggcattacaggtatgagccaccatgcccggccctattagtacacttatatatgtgtgaaataagccgtgtacaagaatattcatgtgaaataattatttgcaaccgaaataaatggg-aacagcacttatcaatagacaactaaataaatgctggtgtatacagttgaatTAAATTT---
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30022648 438 + 172585720 aaggagtttcactcttgcctcccagcctggagtgcaatggcacgatctcgcctctctgcaacctccacctcctgggttcaagcgattctcctccctcagccttctgagtaactgggattgcaggcatgtgccaccatgcctgacta-----taatttattatttatttattatttttatttttagtagagatggggtttcagcatgttggtcaggctagtctcgaactcctgacctcaggtgatctgcctgcctcagcctcccaaagtgctagcattacaggtatgagccaccatgcctggccctattagtacacttatgtatgtgtggaataagccatgtacgagaatattcatgtgaaataactattggcaatcgaaataaatggg-aacaacacttatcaatagac----aaataaatgctggtgtatacggttgaattaaattt---
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29686548 438 - 170955103 aaggagtttcactcttgcctcccagcctggagtgcaatggcacgatctcgcctctctgcaacctccacctcctgggttcaagcgattctcctccctcagccttctgagtaactgggattgcaggcatgtgccaccatgcctgacta-----taatttattatttatttattatttttatttttagtagagatggggtttcagcatgttggtcaggctagtctcgaactcctgacctcaggtgatctgcctgcctcagcctcccaaagtgctagcattacaggtatgagccaccatgcctggccctattagtacacttatgtatgtgtggaataagccatgtacgagaatattcatgtgaaataactattggcaatcgaaataaatggg-aacaacacttatcaatagac----aaataaatgctggtgtatacggttgaattaaattt---
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2732689 438 -   2996164 aaggagtttcactcttgcctcccagcctggagtgcaatggcacgatctcgcctctctgcaacctccacctcctgggttcaagcgattctcctccctcagccttctgagtaactgggattgcaggcatgtgccaccatgcctgacta-----taatttattatttatttattatttttatttttagtagagatggggtttcagcatgttggtcaggctagtctcgaactcctgacctcaggtgatctgcctgcctcagcctcccaaagtgctagcattacaggtatgagccaccatgcctggccctattagtacacttatgtatgtgtggaataagccatgtacgagaatattcatgtgaaataactattggcaatcgaaataaatggg-aacaacacttatcaatagac----aaataaatgctggtgtatacggttgaattaaattt---
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1     483464 438 +    766320 aaggagtttcactcttgcctcccagcctggagtgcaatggcacgatctcggccctctgcaacctccgcctcctgggttcaagcaattctcctccctcagccttctgagtaactgggattgcaggcatgcaccaccatgcctgacta-----taatttattatttatttattatttttatttttagtagagatggggtttcagcatgttggtcaggctggtctcaaactcctgacctcaggtgatccacctgcctcagtctcccaaagtgctggcattacaggtatgagccacgatgcctggccctattagtacacttatgtatgtgtggaataagccatgtacgagaatattcatgtgaaataactattggcaatcgaaataaatggg-aacaacacttatcaatagac----aaataaatgctggtgtatacggttgaattaaattt---
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17            28941347 438 -  71996105 aaggagtttcactcttgcctcccagcctggagtgcaatggcacgatcttgcctctctgcaacctccgcctcctgggttcaagcgattctcctccctcagccttctgagtaactgggattgcaggcatgtgccaccatgcctgacta-----taatttattatttatttattatttttatttttagtagagatggggtttcagcaagttggtcaggctagtctcgaactcctgacctcaggtgatctgcctgcctcagcctcccaaagtgctagcattacaggtatgagccaccatgcctggccctattagtacacttatgtatgtgtggaataagccatgtacgagaatattcatgtgaaataactattggcaatcgaaataaatggg-aacaacACTTATCAATAGAC----AAATAAATGCTGGTGTATACGGTTGAAttaaattt---
i chlSab2.chr17            I 180 C 0
s manLeu1.NW_012099233v1     117386 438 +    290775 aaggagtttcactcttgcctcccagcctggagtgcaatggcacgatctcggccctctgcaacctccgcctcctgggttcaagcaattctcctccctcagccttctgagtaactgggattgcaggcatgcaccaccatgcctgacta-----taatttattatttatttattatttttatttttagtagagatggggtttcagcatgttggtcaggctggtctcgaactcctgacctcaggtgatccacctgcctcagtctcccaaagtgctggcattacaggtatgagccaccatgcctggccctattagtacacttatgtatgtgtggaataagccatgtacgagaatattcatgtgaaataactattggcaatcgaaataaatggg-aacaacacttatcaatagac----aaataaatgctggtgtatacggttgaattaaattt---
i manLeu1.NW_012099233v1   I 2 C 0
s colAng1.NW_012115566v1    2565010 438 -   3067355 aaggagtttcactcttgcctcccagcctggagtgcaatggcatgatctcggctctctgcaacctccgcctcctgggttcaagcgattctcctccctcagccttctgagtaactgggattgcaggcatgcgccaccatgcctgacta-----taatttcttatttatttattatttttatttttagtagagatggggtttcagcatgttggtcaggctggtctcgaactcctgacctcaggtgatgcgcctgcctcagcctcccaaagtgctggcattacaggtatgagccaccatgcctggccctattagtacacttatgtatgtgtggaataagccatgtacaagaatattcatgtgaaataactattggcaatggaaataaatggg-aacaacacttatcaatagac----aaataaatgctggtgtatacagttgaattaaattt---
i colAng1.NW_012115566v1   I 2 C 0
s saiBol1.JH378357           169115 419 -    242197 acgaaatttcactcttgtctcccaggctgcagtgcaatggtgaaatctcagctcactgcaatctctgcctcccaggttcaagtgattctcctgcctcagccttctgagtagctgggattccaggcatgtgccaccatgcccagcta--------------tttttttt-----tattatttttagtagagatggggcttcagcatgttggccaagctgatctcagactcctgacctcaagtgatccacccacctcagct----------atggcattacaggtgttagccaccatgcccagccctattagtacagttatatatttgtgaaataagccatgtacaagaatatttgcatgaaataattatttgcaattgaaataaatgggaaaaaacacttatcaatagacaactaaataaatgctggtgtatacagttgaattaacttt---
i saiBol1.JH378357         I 1 I 142
s cebCap1.NW_016107755v1     163323 426 -   1771730 atgaaatttcactcctgtctcccaggctgcagtgcaatggtgaaatctcagctcactgcaacttctgcctcccaggttcaagtgattctcctgcctcagccttctgagtagctgggattgcaggcatgtgccaccatgcccagcta--------------attttttt-------ttatttttagtagagatggggcttcagcatgttggccaggcttatctcagactcctgacctcaggtgatccgcccacctcagcctcccaaagtgctggcattacaggtgtgagccaccatgcccagccctattagtacagttatatatttgtgaaataagccatgtacaggaatatttgtgtgaaataattatttgcaattgaaataaatggg-aagaacacttatcaatagacaactaaataaatgctggtgtatacagttgaatTAACTTT---
i cebCap1.NW_016107755v1   I 1 I 140
s aotNan1.NW_018509740v1     239124 399 -    457564 atgaaatttcactcttgtctcccaggctgcagtgcaatggtgaaatctcagctcactgcaacctctgtctcccaggttcaagtgattctcctgcctcagccttctgagtagctgggatttcaggcatgtgccaccatgcccaga---------------------------------------agtagagatggggcttcagcatgttggccaggctgatcttagactcctgacctcaggtgatccacccacctcagcctcccaaagtgctggcattacaggtgtaagccaccatgcccggccctattagtacagttatatatttgtgaaataagccatgtacaagaatatttgtgtgaaataattatttgcaattgaaataaatagg-aagaacacttatcaatagacaactaaataaatgctg---------gtTGAATTAACTTT---
i aotNan1.NW_018509740v1   I 1 I 1
s otoGar3.GL873550            56393 269 +  18854210 agacagtctcaag-ttgttgcccttggtagagtgccatggcataa---catctcacggcaatctgaaactcttgggcttaagcaatatccttgcctcagcctcccaagtagctgggactacaggtgcccaaaacaatgcctggcta------------tttttttgttgcagttgtcattgttg-------------tttagc---tggcccaggttgtggtcaaac-----------------ccaccagccttagt-----------------------gtatg--------tggccggcacc-------------------------ataacctctgtac----------------------tataggcacc-----------ga-gccAA-------------------------------------------GAATTAATTGTTTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     517370 707 +    730504 I

a score=1578927.000000
s hg38.chr6_GL000254v2_alt   830156 168 +   4827813 aaaagccaagttgcaaaatatatgtataatattttgttatttagaaaggaagaaaatatacacatatgctaaaatgtgcatacaacatctctgtgaggagacacTGA---CTCTGCA------------AGT-TGCCTG---AGGAGCAGGAATGAGAGGTGGACTATTC--ATTA--TATGTCTTATCTT
s panTro5.chr6             29792963 168 + 175400573 aaaagccaagttgcaaaatatatgtataatattttgttatttagaaaggaagaaaatatacacatatgctaaaatgtgcatacaacatctctgtgaggagacacTGA---CTCTGCA------------AGT-TGCCTG---AGGAGCAGGAATGAGAGGTGGACCATTC--ATTA--TATGTCTTATCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30027606 168 + 173848474 aaaagccaagttgcaaaatatatgtataatattttgttatttagaaaggaagaaaatatacacatatgctaaaatgtgcatacaacatctctgtgaggagacacTGA---CTCTGCA------------AGT-TGCCTG---AGGAGCAGGAATGAGAGGTGGACCATTC--ATTA--TATGTCTTATCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5830989 168 +   6154872 aaaagccaagttgcaaaatatatgtataatattttgttatttagaaaggaagaaaatatgcacatatgctaaaatgtgcatacaacatctctgtgaggagacacTGA---CTCTGCA------------AGT-TGCCTG---AGGAGCAGGAATGAGAGGTGGACCATTC--ATTA--TATGTCTTATCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74557482 168 + 122973662 AAAAGCCAAGTTGCAATATATATGTATAATATTTTGTTATTTAGAAAGGAAGAAAATATACACATATGCTAAAATGTGCATGCAACATATCTGTGAGGAGACACTGA---CTCTGCG------------AGT-TGCCTG---AGGAGCAGGAATGAGAGGTGGACTATTC--ATTA--TATGTCTTATCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30023086 179 + 172585720 aaaagccaagttgcaaaatatatgtataatattttgttatttagaaaggaagaaaatatacacatatgctaacatgtgcatacaacatctctgtgaggagacacTGA---CTCTGCAAAGAGTAACT-GAGT-TGCCTG---AGGAACAGGAATGAGAGGCGGACTATTT--ATTA--TACTTCTTATCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29686986 179 - 170955103 aaaagccaagttgcaaaatatatgtataatattttgttatttagaaaggaagaaaatatacacatatgctaacatgtgcatacaacatctctgtgaggagacactga---ctctgcaaagagtaact-gagt-tgcctg---aggaacaggaatgagaggcggactattt--atta--taCTTCTTATCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2733127 179 -   2996164 aaaagccaagttgcaaaatatatgtataatattttgttatttagaaaggaagaaaatatacacatatgctaacatgtgcatacaacatctctgtgaggagacacTGA---CTCTGCAAAGAGTAACT-GAGT-TGCCTG---AGGAACAGGAATGAGAGGCGGACTATTT--ATTA--TACTTCTTATCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     483902 179 +    766320 aaaagccaagttgcaaaatatatgtataatattttgttatttagaagggaagaaaatatacacatatgctaacatgtgcatacaacatctctgtgaggagacacTGA---CTCTGCAAAGAGTAACT-GAGT-TGCCTG---AGGAACAGGATTGAGAGGTGGACTATTT--ATTA--TACTTCTTATCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28941785 179 -  71996105 aaaagccaagttgcaaaatatatgtataatattttgttatttagaaaggaagaaaatatacacatatgctaacatgtgcatacaacatctctgtgaggagacactga---ctctgcaaagagtaact-gagt-tgcctg---aggaacaggaatgagaggcagaatattt--atta--taCTTCTTATCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     117824 179 +    290775 aaaagccaagttgcaaaatatatgtataatattttgttatttagaagggaagaaaatatacacatatgctaacatgtgcatacaacatctctgtgaggagacacTGA---CTCTGCAAAGAGTAACT-GAGT-TGCCTG---AGGAACAGGAATGAGAGGTGGACTATTT--ATTA--TACTTCTTATCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2565448 179 -   3067355 aaaagccaagttgcaaaatatatgtataatattttgttatttagaaaggaagaaaatatacacatatgctaaaatgtgcatacaacatctctgtgaggagacactga---ctctgcaaagagtaact-gagt-tgcctg---aggaacaggaatgagaagtggactattt--atta--tacgtcttatctt
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           169676 179 -    242197 aaaagccgagTTGCAAAATATATGTATAATATATTGTTATTTGGAAAGGAAGAAAATATACACATATGCTAAAATGTTCATTTAATATCACTGTGAGGAGATACTGA---TTCTGCAAAGAGTAACT-GAGT-TGCCTG---AGGAACAGGAATGAGAGGTGGGCTGTTT--ATTA--TATGTCTTGTCTT
i saiBol1.JH378357         I 142 C 0
s cebCap1.NW_016107755v1     163889 179 -   1771730 aaaaGCcaagttgcaaaatatatgtataatatattgttatttggaaaggaagaaaatatacacatatgctaaaatgtgcatacaatatcactgtgaggagatacTGA---TTCTGCAAAGAGTAACT-GAGT-TGCCTG---AGGAACAGGAATGAGAGGTGGACCGTTT--ATTA--CATGTCTTGTCTT
i cebCap1.NW_016107755v1   I 140 C 0
s aotNan1.NW_018509740v1     239524 185 -    457564 aaaagccaagttgcaaaatacatgtataatattttgttatttggaaagaaagaaaatatacacatatgctgaaatgtgcatacaatatcactgtgaggagatacTGA---TTCTGCAAGGAGTAACTAGAGTGTGCCTGCCAGGAAACAGGAATGA-AGGTGACTAGTTTTGATTA--TATGTCTTGTCTT
i aotNan1.NW_018509740v1   I 1 I 72
s otoGar3.GL873550            56662 179 +  18854210 AAAAG----GTTATAAAGTgtatatataatattctgttatttagaaaagaa-aatatatgcacatatactaaaatatgcctaggatatatctgggaggagatattgccttctctggggagggaaatt-gagt-taccta---aggaacaggaatggaagatggacttatt--atgaattatatgttttcct
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     517370 707 +    730504 I

a score=520440.000000
s hg38.chr6_GL000254v2_alt   830324 64 +   4827813 ATTATTGTTGCTATTTTTTAGTTTTGCAACT-GTGCATGTTTTACACATTCAGATAGGCAGATAG
s panTro5.chr6             29793131 64 + 175400573 ATTATTGTTGTTATTTTTTAGTTTTGCAACT-GTGCATGTTTTACACATTCAGATAGGCAGATAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30027774 64 + 173848474 ATTATTGTTGTTATTTTTTAGTTTTGCAACT-GTGCATGTTTTACACATTCAGATAGGCAGATAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5831157 64 +   6154872 ATTATTGTTGTTATTTTTTAGTTTTGCAACT-GTGCATGTTTTACACATTCAGATAGGCAGATAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74557650 64 + 122973662 ATTATTTTTGTTACTTTTTAGTTTTGCAACT-GTGCGTGTTTTACACATTCAGATAGGCAGCTAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30023265 64 + 172585720 ATTATTGCTGTTATTTTCTAGTTTTGCAACC-GTGCTTGTTTTACACATTCAGATAGGCAGATAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29687165 64 - 170955103 ATTATTGCTGTTATTTTCTAGTTTTGCAACC-GTGCTTGTTTTACACATTCAGATAGGCAGATAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2733306 64 -   2996164 ATTATTGCTGTTATTTTCTAGTTTTGCAACC-GTGCTTGTTTTACACATTCAGATAGGCAGATAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     484081 64 +    766320 ATTATTGCTGTCATTTTCTAGTTTTGCAACC-GTGCTTGTTTTACACATTCAAATAGGCAGATAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28941964 64 -  71996105 ATTATTGCTGTTATTTTCTAGTTTTGCAACC-TTGCTTGTTTTACACATTCAGATAGGCAGATAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     118003 64 +    290775 ATTATTGCTGTCATTTTCTAGTTTTGCAACC-GTGCTTGTTTTACACATTCAAATAGGCAGATAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2565627 64 -   3067355 attattgctgttattttctagttttgcaacc-atgcttgttttacacattcagaTAGGCAGATAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           169855 64 -    242197 ATTATTATCGCTATTTTTTAGTTTTGCAACT-GTACGTGTTTTACATATTCAGATAGGCAGATAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     164068 64 -   1771730 ATTATTATTGTTATTTTTTAGTTTTGCAACT-GTACGTGTTTTACATATTCAGATAGGCAGATAT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550            56841 59 +  18854210 ------actttttctttttagttttgcaacctatacatgtttcacctgttcagatagatagatag
i otoGar3.GL873550         C 0 I 4956
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     517370 707 +    730504 I
e aotNan1.NW_018509740v1     239709 72 -    457564 I

a score=23257.000000
s hg38.chr6_GL000254v2_alt   830388 3 +   4827813 TAT
s panTro5.chr6             29793195 3 + 175400573 TAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30027838 3 + 173848474 TAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5831221 3 +   6154872 TAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74557714 3 + 122973662 TAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30023329 3 + 172585720 TAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29687229 3 - 170955103 TAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2733370 3 -   2996164 TAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     484145 3 +    766320 TAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28942028 3 -  71996105 TAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     118067 3 +    290775 TAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2565691 3 -   3067355 TAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           169919 3 -    242197 TAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     164132 3 -   1771730 TGT
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     517370 707 +    730504 I
e otoGar3.GL873550            56900 4956 +  18854210 I
e aotNan1.NW_018509740v1     239709 72 -    457564 I

a score=82557.000000
s hg38.chr6_GL000254v2_alt   830391 9 +   4827813 GGGAAGGGA
s panTro5.chr6             29793198 9 + 175400573 GGGAAGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30027841 9 + 173848474 GGGAAGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5831224 9 +   6154872 GGGAAGGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74557717 9 + 122973662 GGGAAGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30023332 9 + 172585720 GGGAAGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29687232 9 - 170955103 GGGAAGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2733373 9 -   2996164 GGGAAGGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     484148 9 +    766320 GGGAAGGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28942031 9 -  71996105 GGGAAGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     118070 9 +    290775 GGGAAGGGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2565694 9 -   3067355 GGGAAGGGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           169922 9 -    242197 GGGAAGGAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     164135 9 -   1771730 GGGAAGGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     239781 9 -    457564 GGGAAGGAG
i aotNan1.NW_018509740v1   I 72 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     517370 707 +    730504 I
e otoGar3.GL873550            56900 4956 +  18854210 I

a score=2723419.000000
s hg38.chr6_GL000254v2_alt   830400 271 +   4827813 TAGTA-TATTTTTTATGTAGTCATCAGCTCAGAATGGA-GCTGGCTATAAGCTATGCACCAATGGGAACCAGTTTCAGTGCTCATCACTAGTTGACAGGCAAAGGGCCATGAAAAGTTGGTGGCTATAGTAGGTTAACTATTGTGATTCTGTGCCTTCCCTACTCCCCAAAATTTATTTTCCACTAATCTTTTACATACTGCAAAATTTAGAAACATTGATAATATAGCCCATAATA-TATCTGAAAGCAAAGAAATTTATAATTAGCTAAAAT
s panTro5.chr6             29793207 271 + 175400573 TAGTA-TATTTTTTATATAGTCATCAGCTCAGAATGGA-GCTGGCTATAAGCTATGCACCAATGGGAACCAGTGTCAGTGCTCATCACTAGTTGACAGGCAAAGAGCCATGAAAAGTTGGTGGCTATAGTAGGTTAACTGTTGTGATTCTGTGCCTTCCCTACTCCCCAAAATTTATTTTCCACTAATCTTTTACATACTGCAAAACTTAGAAACATTGATAATATAGCCCATAATA-TATCTGAAAGCAAAGAAATTTATAATTAGCTAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30027850 271 + 173848474 TAGTA-TATTTTTTATATAGTCATCAGCTCAGAATGGA-GCTGGCTATAAGCTATGCACCAATGGGAACCAGTGTCAGTGCTCATCACTAGTTGACAGGCAAAGAGCCATGAAAAGTTGGTGGCTATAGTAGGTTAACTATTGTGATTCTGTGCCTTCCCTACTCCCCAAAATTTATTTTCCACTAATCTTTTACATAATGCAAAACTTAGAAACATTGATAATATAGCCCATAATA-TATCTGAAAGCAAAGAAATTTATAATTAGCTAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5831233 271 +   6154872 TAGTA-TATCTTTTATATAGTCATCAGCTCAGAATGGA-GCTGGCTATAAGCTATGCACCAATGGGAACCAGTGTCAGTGCTCATCACTAGTTGACAGGCAAAGGGCCATGAAAAGTTGGTGGCTATAGTAGGTTAACTATTGTGATTCTGTGCCTTCCCTACTCCCCAAAATTTATTTTCCACTAATCTTTTACATACTGCAAAACTTAGAAACATTGATAATATAGCCCATAATA-TATCTGAAAGCAAAGAAATTTATAATTAGCTAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74557726 271 + 122973662 TAGTA-TAGTTTTTATATAGTCACCAGCTCAGAATGGA-GCTGGCTATAAGCTATGCACCAATGGGAACCAGTTTCAGTGCTCATCACTAGTTGACAGGCAAAGGGCCATGAAAAGTTGGTGGCTATAGTAGGTTAACTATTGTGATTCTGTGCCTTCCCTACTCCCCAAAATTTATTTTCCACTAATATTTTACATACTGCAAAACTTAGAAACATTGATAATATAGCCCATAATA-TATCTGAAAGCAAAGAAATTTATAATTAGCTAAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30023341 272 + 172585720 TAGTATTTTTTTTTATATAGTCATCAGCTCAGAATGGA-GCTGGCTATGAGCTATACACCAATGGGAACCAGTTTCAGTGCTCATCACTAGTTGACAGGCAAAGGGCCATGAAAAGTTGGTGGCTATAGTAAGTTAACTATTGTGATTCTGTGCCTTCCCTACTCCCCAGAATTTATTTTCCACCAATATTTTACATACCGCAAAACTTGGAAACATTGATAATATAGCCCATAATA-TATCTGAAAGCAAAGAAATTTATAATTAGCTAAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29687241 271 - 170955103 TAGTA-TTTTTTTTATATAGTCATCAGCTCAGAATGGA-GCTGGCTATAAGCTATACACCAATGGGAACCAGTTTCAGTGCTCATCACTAGTTGACAGGCAAAGGGCCATGAAAAGTTGGTGGCTATAGTAAGTTAACTATCGTGATTCTGTGCCTTCCCTACTCCCCAGAATTTAATTTCCACTAATATTTTACATACCGCAAAACTTGGAAACATTGATAATATAGCCCATAATA-TATCTGAAAGCAAAGAAATTTATAATTAGCTAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2733382 271 -   2996164 TAGTA-TTTTTTTTATATAGTCATCAGCTCAGAATGGA-GCTGGCTATAAGCTATACACCAATGGGAACCAGTTTCAGTGCTCATCACTAGTTGACAGGCAAAGGGCCATGAAAAGTTGGTGGCTATAGTAAGTTAACTATCGTGATTCTGTGCCTTCCCTACTCCCCAGAATTTAATTTCCACTAATATTTTACATACCGCAAAACTTGGAAACATTGATAATATAGCCCATAATA-TATCTGAAAGCAAAGAAATTTATAATTAGCTAAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     484157 271 +    766320 TAGTA-TTTTTTTTATATAGTCATCAGCTCAGAATGGA-GCTGGCTATAAGCTATACACCAATGGGAACCAGTTTCAGTGCTCATCACTAGTTGACAGGCAAATGGCCATGAAAAGTTGGTGGCTATAGTAAGTTCACTATTGTGATTCTGTGCCTTCCCTACTCCCCAGAATTTATTTTCCACCAATATTTTACATACCGCAAAACTTGGAAACATTGATAATATAGCCCATAATA-TATCTGAAAGCAAAGAAATTTATAATTAGCTAAAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28942040 271 -  71996105 TAGTA-TTTTTTTTTTATAGTCATCAGCTCAGAATTGA-GCTGGCCATAAGCTATACACCAATGGGAACCAGTTTCAGTGCTCATCACTAGTTGACAGGCAAAGGGCCATGAAAAGTTGGTGGCTATAGTAAGTTAACTATTGTGATTCTGTGCCTTCCCTACTCCCCAGAATTTAATTTCCACTAATATTTTACATACCGCAAAACTTGGAAACATTGATAATATAGCCCATAACA-TATCTGAAAGCAAAGAAATTTATAATTAGCTAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     118079 271 +    290775 TAGTA-TTTTTTTTATATAGTCATCAGCTCAGAATGGA-GCTGGCTATAAGCTATACACCAATGGGAACCAGTTTCAGTGCTCATCACTAGTTGACAGGCAAAGGGCCATGAAAAGTTGGTGGCTATAGTAAGTTAACTATTGTGATTCTGTGCCTTCCCTACTCCCCAGAATTTATTTTCCACCAATATTTTACATACCGCAAAACTTGGAAACATTGATAATATAGCCCATAATA-TATCTGAAAGCAAAGAAATTTATAATTAGCTAAAAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2565703 271 -   3067355 TAGTA-TTTTTTTTATATAGTCATCAGCTCAGAATGGA-GTTGGCTATAAGCTGTACACCAATGGGAACCAGTTTCAGTGCTCATCACTAGTTGACAGGCAAAGGGCCATGAAAAGTTGGTGGCTATAGTAAGTTAACTATTGTGATTCTGTGCCTTCCCTACTCCCCAGAATTTATTTTCCACTAATATTTTACATACCGCAAAACTTGGAAACATTGATAATATAGCCCATAATA-TATCTGAAAGCAAAGAAATTTATAATTAGCTAAAAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           169931 271 -    242197 TGGTA-GCCTTTTTATATAGTCACCAGCTCAGAATGGA-GCTGGCTATAAGCTATGCACCAATGGGAACCAGTTTCAGTGCTCCTCACTAGTTGGCAGGCAAAGGGCCATGAAAAGTTGGTGGTGATAGTGGGTTAACTATTGTGATTCTGTGACTTCCCTACTCCCAAAAATTTATTTTCCACTAATATTTTATATACCAAAGAAATTGGAAACATTGATAATATAGCCCATAATA-GATCTGAAAGTAAAGGAATTTATAATTAGCTAAAAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     164144 271 -   1771730 TGGTA-GCGTTTTTATATAGTCACCAGCTCAGAATGGA-GCTGGCTATAAGCTATGCACCAATGGGAACCAGTTTCAGTGCTCCTCACTAGTTGGCAGGCAAAGGGCCATGAAAAGTTGGTGGTGATAGTGGGTTAACTACTGTGATTCTGTGCCTTCCCTACTCCCCAAAATTTATTTTCCACTAATATTTTATATACCACAAAACTTGGAAACATTGATAATATAGCCCATAATA-AATCTGAAAGTAAAGGAATTTATAATTAGCTAAAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     239790 272 -    457564 TGGTA-GCCTTTTTATACAGTCACCAGCTCAGAATGGAGGCTGGCTATAAGCTATGCACCAATGGGAACAAGTTTCAGTGCTCCTCACTAGTTGACAGGCAAAGGACCATGAAAAGTTGGTGGTGATAGTAGGTTAACTATTGTGATTCTGTGCCTTCCCTACTCCCAAAAATTTATTTTCCACTAATATTTTATATACCACAAAACTTGGAAACATTGATAATATAGCCCATAATA-GATCTGAAAGTAAAGGAATTTATAATTAGCTAAAAT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     518077 271 +    730504 tagTA-TCTTTTTTATTCTGTCATCAGCTCAGGACAGA-GCTGGCTATAAGGTGTGCTCCCATGGGAAGCAGTTTCAGTGCTCATC-CTAGTTGTCAGGCAAATGGCCATGAAAAGTTGGTGGCTATAGTAAGTTAACTAATGTGATTCTGTGCCTTCCCTATTCTCAAACATACACCTTCCACTAGTATTTTACGTATCACAAAACTTTGAAACATTGATAATATATCTCATAATATTATCTGAAAGCAAGGGAATCTAAAATTAGCTAAAAT
i proCoq1.NW_012152574v1   I 707 I 32
e mm10.chr17               57801190 65607 -  94987271 I
e otoGar3.GL873550            56900 4956 +  18854210 I

a score=231060.000000
s hg38.chr6_GL000254v2_alt   830671 33 +   4827813 CAGAGACCAAACCTAATG------AAAAAAAAAAAGTAA
s panTro5.chr6             29793478 33 + 175400573 CAGAGACCAAACCTAATG------AAAAAAAAAAAGTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30028121 32 + 173848474 CAGAGACCAAACCTAAT-------AAAAAAAAAAAGTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5831504 34 +   6154872 CAGAGACCAAACCTAATGA-----AAAAAAAGAAAGTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74557997 34 + 122973662 CAGAGACCAAACTTAACCA-----AAAAAAAAAAAGTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30023613 39 + 172585720 CAGAGACCAAACCTAACGaaaaaaaaaaaaaaaaaGTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29687512 33 - 170955103 CAGAGACCAAACCTAACGG------AAAAAAAAAAGTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2733653 31 -   2996164 CAGAGACCAAACCTAACGG--------AAAAAAAAGTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     484428 34 +    766320 CAGAGACCAAACCTAACGA-----AAAAAAAAAAAGTAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28942311 38 -  71996105 CAGAGACCAAACCTAACGG-AAAAAAAAAAAAAAAGTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     118350 35 +    290775 CAGAGACCAAACCTAACG----AAAAAAAAAAAAAGTAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2565974 36 -   3067355 CAGAGACCAAATCTAACGA---AAAAAAAAAAAAAGTAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           170202 33 -    242197 CAGAGACCAAACCTAACT------TTAAAAAAAAGGTAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     164415 34 -   1771730 CAGAGACCAAACCTAACT-----AAAAAAAAAAAGGTAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     240062 39 -    457564 CAGAGACCAAACCTAACTAAAAAAAAAAAAAAAAGGTAA
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518348 32 +    730504 I
e otoGar3.GL873550            56900 4956 +  18854210 I

a score=1952219.000000
s hg38.chr6_GL000254v2_alt   830704 202 +   4827813 TTCTGAGACAATTGCTGAGCCTGGTACATGGGACTGATGTCAATGTGCAAAAATTGTCCAACCTGACAAAGCAACTGGAATAACTAATGCAGTCATAAGTGCAGGATGATGTGTTGACCAATGGCGCATTTCCACTTTGTAGCAGTCAGGCCATCTTGGAGTGAATCCAGGCTCTGCCTCCTACTTCTCATGCAAGTTATTT
s panTro5.chr6             29793511 202 + 175400573 TTCTGAGACAATTGCTGAGCCTGGTACTTGGGACTGATGTCAATGTGCAAAAATTGTCCAACCTGACAAAGCAACTGGAATAACTAATGCAGGCATAAGTGCAGGATGATGTGTTGACCAATGGCACATTTCCACTTTGTAGCAGTCAGGCCATCTTGGAGTGAATCCAGGCTCTGCCTCCTACTTCTCATGCAAGTTATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30028153 202 + 173848474 TTCTGAGACAATTGCTGAGCCTGGTACTTGGGACTGATGTCAATGTGCAAAAATTGTCCAACCTGACAAAGCAACTGGAATAACTAATGCAGGCATAAGTGCAGGATGATGTGTTGACCAATGGCACATTTCCACTTTGTAGCAGTCAGGCCATCTTGGAGTGAATCCAGGCTCTGCCTCCTACTTCTCATGCAAGTTATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5831538 202 +   6154872 TTCTGAGACAATTGCTGAGCCTGGTACTTGGGACTGATGTCAATGTGCAAAAATTGTCCAACCTGACAAAGCAACTGGAATAACTAATGCAGGCATAAGTGCAGGATGATGTGTTGACCAATGGCACATTTCCACTTTGTAGCAGTCAGGCCATCTTGGAGTGAATCCAGGCTCTGCCTCCTACTTCTCATGCAAGTTATTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74558031 202 + 122973662 TTCTGAGACAATTGCTGAACCTGATACTTGGGACTGATGTCAATGTGCAAAAATTGTCCGACCTGACAAAGCAACTGGAATAACTAATGCAGTCACAGGTGCAGGATGATGTGTTGACCAATGGCCCATTTCCACTTTGTAACAGTCAGGCCATCTTGGAGTGAATCCAGGCTCTGCCTCCTACTTCTCATGCAAGTTATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30023652 202 + 172585720 TTCTGAGACAATTGCTGAGTCTGGTACTTGGGTCTGATGTCAATGTGCAAAAATTGTCTGACCTGACAAAGCAACTGGAATAACTAATGCAGTCATAGGTGCAGGATGATGTGTTGACCAACGGCCCATATCCACTTCGTAGCAGTCAGGCCATCTTGGAGTGAATCCAGGCTCTGCCTCCTACTTCCCATGCAACTTATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29687545 195 - 170955103 TTCTGAGACAATTGCTGAGTCTGGTACTTGGGTCTGATGTCAATGTGCAAAAATTGTCTGACCTGACAAAGCAACTGGAATAACTAATGCAGTCATAGGTGCAGGATGATGTGTTGA-------CCCATATCCACTTTGTAGCAGTCACGCCAACTTGGAGTGAATCCAGGCTCTGCCTCCTACTTCCCATGCAACTTATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2733684 195 -   2996164 TTCTGAGACAATTGCTGAGTCTGGTACTTGGGTCTGATGTCAATGTGCAAAAATTGTCTGACCTGACAAAGCAACTGGAATAACTAATGCAGTCATAGGTGCAGGATGATGTGTTGA-------CCCATATCCACTTTGTAGCAGTCACGCCAACTTGGAGTGAATCCAGGCTCTGCCTCCTACTTCCCATGCAACTTATTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     484462 202 +    766320 TTCTGAGACAATTGCTGAGTCTGGTACTTGGGTCTGATGTCAATGTGCAAAAATTGTCTGACCTGACAAAGCAACTGGAATAACTAATGCAGTCATAGGTGCAGGATGATGTGTTGACCAACGGCCCATATCCACTTCATAGCagtcaggccatcttggaatgaatccaggctctgcctcctacttcccatgcaacttATTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28942349 195 -  71996105 TTCTGAGACAATTGCTGAGTCTGGTACTTGGGTCTGATGCCAATGTGCAAAAATTGTCTGACCTGACAAAGCAACTGGAATAACTAATGCAGTCATAGGTGCAGGATGATGTGTTGA-------CCCATATCCACTTTGTAGCAGTCAAGCCAACTTGGAGTGAATCCAGGCTCTGCCTCCTACTTTCCATGCAACTTATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     118385 202 +    290775 TTCTGAGACAATTACTGAGTCTAGTACTTGGGTCTGACGTCAATGTGCAAAAATTGTCTGACCTGAAAAAGCAACTGGAATAACTAATGCAGTCATAGGTGCAGGATGATGGGTTGACCAACGGCCCATATCCACTTCGTAGCAGTCAGGCCATCTTGGAATGAATCCAGGCTCTGCCTCCTACTTCCCATGCAACTTATTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2566010 202 -   3067355 TTCTGAGACAATTGCTGAGTCTGGTACTTGGGTCTGATGTCAATGTGCAAAAATTGTCTGACCTGACAAAGCAACTGGAATAACTAATGCAGTCATAGGTGCAGGATGATGTATTGACCAGCGGCCCATATCCGCTTCGTAGCAGTCAGGCCATCTTGGAGTGAATCCAGGCTCTGCCTCCTACTTCCCGTGCAACTTATTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           170235 202 -    242197 TTCTGAGACAATTGCTGAGCCTGGTACTTGGGTCTGATATCAATGTGCAAAAATGGTCTGACCTGACAAAGCAACTGGAATAACTAGTGCACTCACAGGAGCAGGATGATGTGCTGACCAATGGCCCACACCCGCTTTGTAGCAGTCAGGCCATCTTGGAGTGAATCTAGGCTCTGCCTCCTACTTCCCGTGTAAGTTACTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     164449 202 -   1771730 TTCTGAGACAATTGCTGAGCCTGGTACTTGGGTCTGATATCAATGTGCAAAAATTGTCTGACCTGACAAAGCAATTGGAATACCTAGTGCAGTCATAGGTGCAGGATGATGTGCTGACCAATGGCCCACATCCGCTTTGTAGCAGTCAGGCCATCTTGGAGTGAATCTAGGCTGTGCCTCCTACTTCCCATGCAAGTTACTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     240101 201 -    457564 TTCTGA-ACAATTGCTGAGCCTGGTACTTGGGTCTGATATCAATGTGCAAAAATTGTCTGACCTGACAAAGCAACTGGAATAACTAGTGCAGTCATAGGTGCAGGATGATGTGTTGACCAATGGCCTACATCCACTTTGTAGCAGTCAGGCCATCTTGGAGTGAACCTAGGCTCTGCCTCCTACTTCCCATGCAAGTTACTT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     518380 199 +    730504 TTCTGGGACAATCACTAA--CCTGCACTTGGGTCTGATGACAATGTGTAAAAATTATCTACGCTAACAAAATGACTGGAATAGCTAATGCAGTCATGGGTGCAGGCTGATGTGTGGGCCAATGGCCCGCAT-CGCTTTGCAGCagtcaggccatcctggagtgaatccaggctctgcctcctacttcccatataagttattt
i proCoq1.NW_012152574v1   I 32 I 45539
e mm10.chr17               57801190 65607 -  94987271 I
e otoGar3.GL873550            56900 4956 +  18854210 I

a score=230367.000000
s hg38.chr6_GL000254v2_alt   830906 26 +   4827813 GGTACTTTCTTCTGTCAGCTGGGGAT
s panTro5.chr6             29793713 26 + 175400573 GGTACTTTCTTCTGTCAGCTGGGGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30028355 26 + 173848474 GGTACTTTCTTCTGTCAGCTGGGGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5831740 26 +   6154872 GGTACTTTCTTCTGTCAGCTGGGGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74558233 26 + 122973662 GGTACTTTTTTCTGTCAGCTGGGGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30023854 26 + 172585720 GGTACTCTCTTCTGTCAGCTGAGGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29687740 26 - 170955103 GGTACTCTCTTCTGTCAGCTGGGGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2733879 26 -   2996164 GGTACTTTCTTCTGTCAGCTGGGGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     484664 26 +    766320 GGTACTTTCTTCTGTCAGCTGGGGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28942544 26 -  71996105 GGTACTTACTTCTGTCAGCTGGGGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     118587 26 +    290775 GGTACTTTCTTCTGTCAGCTGGGGAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2566212 26 -   3067355 GGTACTTTCTTCTGTCAGCTGGGGAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           170437 22 -    242197 AGTACTTTCTTCTGTCAGCTGG----
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     164651 26 -   1771730 AGTACTTTCTTCTGTGAGCTGGGGAt
i cebCap1.NW_016107755v1   C 0 N 0
s aotNan1.NW_018509740v1     240302 26 -    457564 AGTACTTTCTTCTGTCAGCTGGGGAt
i aotNan1.NW_018509740v1   C 0 N 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518579 45539 +    730504 I
e otoGar3.GL873550            56900 4956 +  18854210 I

a score=420770.000000
s hg38.chr6_GL000254v2_alt   830932 66 +   4827813 TTCGGATTTCACTTAGGATTAGGCTCTG--CTACCATT--AACAGACATCTGAAAATAATGTGCCTTTAA
s panTro5.chr6             29793739 66 + 175400573 TTCGGATTtcacttaggattaggctctg--ctaccatt--aacagacgcctgaaaataatgtggctttaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30028381 66 + 173848474 TTCGGATTtcacttaggattaggctctg--ctaccatt--aacagacgcctgaaaataatgtggctttaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5831766 66 +   6154872 TTCGGATTTCACTTAGGATTAGGCTCTG--CTACCATT--AACAGACGCCTGAAAATAGTGTGGCTTTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74558259 66 + 122973662 TTCGGGTTTCACTTAGGATTGGGCTCTG--CTACCATT--AACAGACACCTGAAAATAATGTGGCTTTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30023880 66 + 172585720 TTCGGATTtcacttaggattaggctgtg--ctaccatt--aacagagacctgaaaataatgtggctttaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29687766 66 - 170955103 TTTGGATTtcacttaggattaggctgtg--ctaccatt--aacagagacctgaaaataatgtggctttaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2733905 66 -   2996164 TTTGGATTtcacttaggattaggctgtg--ctaccatt--aacagagacctgaaaataatgtggctttaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     484690 66 +    766320 TTCGGATTtcacttaggattaggctgtg--ctaccatt--aacagagacctgaaaataatgtggctttaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28942570 66 -  71996105 TTCGGATTtcacttaggattaggctgtg--ctaccatt--aacagagacctgaaaataatgtggctttaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     118613 66 +    290775 TTCGGATTtcacttaggattaggctgtg--ctaccatt--aacagagacctgaaaataatgtggctttaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2566238 66 -   3067355 TTCGGATTTCACTTAAGATTAGGCTGTG--CTACCATT--AACAGAGACCTGAAAATAATGTGGCTTTAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           170459 67 -    242197 ---GGAtatcacttaggcttaggctctgttttagcagcagaacagagacctgaaaataatgtggttttaa
i saiBol1.JH378357         C 0 T 82273
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518579 45539 +    730504 I
e otoGar3.GL873550            56900 4956 +  18854210 I

a score=1962530.000000
s hg38.chr6_GL000254v2_alt   830998 344 +   4827813 CTAAAACCCCAAAAGGACCAGATCTTAGAAGTCAAAATGACAACCAAGGCTTAAGGAGTTCACCCTAGAACCAAGAAAAAACTGCAATGATCCATTCCAGCAAAATGTAAAGCCAGTTTTTCAGAAGTTCAAAGTGATAAGTGGGTAATATATCTGCTTATTAAACAAGATTCAATACGCTTCAGAGAAAGATAATAGAATACAAAATagataaaggtaatagaatacggaatctctgtaacatattactcacatcatcaagtgtaaaacaggaaatcaccaatcatgtgaagaaacagaaatattagacaaacagttttaaatcctcaataaaaacaaaccca
s panTro5.chr6             29793805 344 + 175400573 cTGAAACACCAAAAGGACCAGATCTTAGAAGTCAAAATGACAACCAAGGCTTAAGGAGTTCACCCTAGAACCAAGAAAAAACTGCAATGATCCATTCCAGCAAAACGTAAAGCCAGTTTTTCAGAAGTTCAAAGTGATAAGTGGGTAATATATCTGCTTATTAAACAAGATTCAATACGCTTCAGAGAAAGATAATAGAATACGAAATagataaaggtaatagaatacggaatctctgtaacatattactcacatcatcaagtgtaaaacaggaaatcaccaatcatgtgaagacacagaaatattagacaaacagttttaaatcctcaataaaaacaaaccca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30028447 344 + 173848474 cTGAAACCGCAAAAGGACCAGATCTTAGAAGTCAAAATGACAACCAAGGCTTAAGGAGTTCACCCTAGAACCAAGAAAAAACTGCAATGATCCATTCCAGCAAAACGTAAAGCCAGTTTTTCAGAAGTTCAAAGTGATAAGTGGGTAATATATCTGCTTATTAAACAAGATTCAATACGCTTCAGAGAAAGATAATAGAATACGAAATagataaaggtaatagaatacggaatctctgtaacatattactcacatcatcaagtgtaaaacaggaaatcaccaatcatgtgaagacacagaaatattagacaaacagttttaaatcctcaataaaaacaaaccca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5831832 344 +   6154872 CTGAAACCCTAAAAGGACCAGATCTTAGAAGTCAAAATGACAACCAAGGCTTAAGGAGTTCACCCTAGAACCAAGAAAAAACTGCAATGATCCATTCCAGCAAAATGTAAAGCCAGTTTTTCAGAAGTTCAAAGTGATAAGTGGGTAATATATCTGCTTATTAAACAAGATTCAATACGCTTCAGAGAAAGATAATAGAACACGAAATagataaaggtaatagaatacggaatctctgtaacatattactcacatcatgaagtgtaaaacaggaaatcaccaatcatgtgaagaaacagaaatattagacaaacagttttaaatcctcaataaaaacaaaccca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74558325 344 + 122973662 CTGAAACCCCAGAAGGGCCAGACCTTAGAAGTCAAAATGACAACCAAGGCTTAAGGAGTTCACCCTAGAACCAAGAAAAAACTGCAATGATCCACTCCAGCAAAATGTAAAGCCAGTTTTTCAGAAGTTCAAAGTGATCAGTGGGTAATATATCTGCTTATTAAACAAGATTCAATACACTTCAGAGAAAGATAATAGAATACGAAATagataaagataatagaattcaaaatctctgtaacatattactcacatcatcaagtttaaaacaggaaattaccaattatgtaaagaaacagaaatattagacaaatggttttaaatcctcaataaaaacaaaccca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30023946 340 + 172585720 cTGAAACCCCAAAAGGACCAGATTTTAGAAGTCAAAATCACAACCAAGGCTTAAGGAATTCACCCCACAACCAAGGAAAAACTGCAATGATCCATTCCAGCAAAATGTAAAGCCAGTTTTTCAGAAGTTCAAAGTGATCAGTGGGTAATACATCTGCTTATTATACAAGATTCAATATGCTTCAGAGAAAGATAATAGAATACGAAATagataaagataatagaatacgaaatctctgtaacatatt----acatcatcaagtgtaaaacaggaaattaccaatcatgtgaagaaacagaaatattagacaaatagttttaaatcctcaataaaaacaaaccca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29687832 340 - 170955103 cTGAAACCCCAAAAGGACCAGATTTTAGAAGTCAAAATCACAACCAAGGCTTAAGGAATTCACCCTAGAACCAAGGAAAAACTGCAATGATCCATTCCAGCAAAATGTAAAGCCAGTTTTTCAGAAGTTCAAAGTGATCAGTGGGTAATATATCTGCTTATTATACAAGATTCAATATGCTTCAGAGAAAGATAATAGAATACGAAATagataaagataatagaatacgaaatctctgtaacatatt----acatcatcaagtgtaaaacaggaaattaccaatcatgtgaagaaacagaaatattagacaaatagttttaaatcctcaataaaaacaaaccca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2733971 340 -   2996164 cTGAAACCCCAAAAGGACCAGATTTTAGAAGTCAAAATCACAACCAAGGCTTAAGGAATTCACCCTAGAACCAAGGAAAAACTGCAATGATCCATTCCAACAAAATGTAAAGCCAGTTTTTCAGAAGTTCAAAGTGATCAGTGGGTAATATATCTGCTTATTATACAAGATTCAATATGCTTCAGAGAAAGATAATAGAATACGAAATagataaagataatagaatacgaaatctctgtaacatatt----acatcatcaagtgtaaaacaggaaattaccaatcatgtgaagaaacagaaatattagacaaatagttttaaatcctcaataaaaacaaaccca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     484756 336 +    766320 cTGAAACCCCAAAAGGACCAGACTTTAGAAGTCAAAATCACAACCAAGACTTAAGGAATTCATCCTACAACCAAGGAAAAACTGCAATGATCCATTCCAGCAAAATGTAAAGCCAGTTTTTCAGAAGTTCAAAGTGATCAGTGGGTAATATATCTGCTTATTAAACAAGATTCAATATGCTTCAGAGAAAGATAATAGAATACGAA----ATAAAGAtaatagaatacgaaatctctgtaacatatt----acatcatcaagtgtaaaacaggaaattaccaatcatgtgaagaaacagaaatattagacaaatagttttaaatcctcaataaaaacaaaccca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28942636 340 -  71996105 cTGAAACCCCAAAAGGACCAGATTTTAGAAGTCAAAATCACAACCAAGGCTTAAGGAATTCACCCTAGAACCAAGGAAAAACTGCAATGATCCATTCCAGCAAAATGTAAAGCCAGTTTTTCAGAAGTTCAAAGTGATTAGTGGGTAATATATCTGCTTATTAAACAAGATTCAATACGCTTCAGAGAAAGATAATAGAATACGAAATagataaagataatagaatacgaaatctctgtaacatatt----acatcatcaagtataaaacaggaaattaccaatcatgtgaagaaacagaaatattagacaaatagttttaaatcctcaataaaaacaaaccca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     118679 336 +    290775 cTGAAACCCCAAAAGGACCAGACTTTAGAAGTCAAAATCACAACCAAGGCTTAAGGAATTCACCCTACAACCAAGGAAAAACTGCAATGATCCATTCCAGCAAAATGTAAAGCCAGTTTTTCAGAAGTTCAAAGTGATCAGTGGGTAATATATCTGCTTATTAAACAAGATTCAATACGCTTCAGAGAAAGATAATAGAATACGAA----ATAAAGAtaatagaatacgaaatctctgtaacatatt----acatcatcaagtgtaaaacaggaaattaccaatcatgtgaagaaacagaaatattagacaaatagttttaaatcctcaataaaaacaaaccca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2566304 340 -   3067355 CTGAAACCCCAAAAGGACCAGACTTTAGAAGTCAAAATCACAACCAAGGCTTAAGGAATTCACCCCAGAACCAAGGAAAAACTGCAATGATCCATTCCAGCAAAATGTAAAGCCAGTTTTTCAGAAGTTCAAAGTGATCAGTGGGTAATATATCTGCTTATTAAACAAGATTCAATATGCTTCagagaaagataatagaatacgaaatagataaagataatagaatacgaaatCTCTGTAACATATT----ACATCATCAAGTGTAAAACAGGAAATTACCAATCATGTGAAGAAACAGAAATATTAGACAAATATTTTTAAATCCTCAATAAAAACAAACCCA
i colAng1.NW_012115566v1   C 0 I 1526
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518579 45539 +    730504 I
e saiBol1.JH378357           170526 82273 -    242197 T
e otoGar3.GL873550            56900 4956 +  18854210 I

a score=4894958.000000
s hg38.chr6_GL000254v2_alt   831342 1061 +   4827813 aacgccaccgaaatgttagaattatcagatggagactttaaaatcactatagtattttaaagaatccacagggaaagattt-atacaatgggtaaa-gaaatgatgaattttaggagacagatgtagaaactgccattttaaaaagccaaacggaaatgctggaactgaaaaatacaatatcgttgacccttgaacaacaagggtttgaactgcatgggtccattgaatgtaga--tttttttcagtaaatatactggaaaatt--ttgtacctttgtgacaatttgaaaaaactcgcaaacttcatagcttagaaacatcaaaataattaagaaacaattaggcatatcataaatgcataaaacatacgtagatactagcatactttatcatttactataaaatatacacaaatctattataaaaagttaaaatttattaaaactcacacacaaatacttataaacaatcataaaatacagtattaaatcataactgcgtaaaattagtcatagtacattctgtcctactataataattatgtagccacctcctgttactattgggtgagctcaagtgttgggagtatgggattaaaatgtcatgtaatactaatcattcccacgtaagcagttcgtcttctctttaggaaaaagtgatgtctcacggttcttgcggttgtcctgtttttgttttgtttgtttgtttattacagagttttgctctgtcgtccaggctggagtgcagtggcacgatctcagctcactgcaacctctgcctcccgggttcaagtgattatcctgcctcagcctcccaagtagctgggattagaggcatgcaccaccacgcctggctaatttttgtatttttagtagaaacgttctttggttcaaga---cggccaagctggtcttgaactcctgacctcaagtgatcca-cccccctcggcctcccaaagtgctgggattacaggtgt--gccaccgcgcccaggatcttgtgtatttttaattgtgtttagtgcaattccataaagcctgaataacaccacgagacccatatagtgatgctgg
s panTro5.chr6             29794149 1063 + 175400573 aacgccacccaagtattagaattatcagatggagactttaaaatcactatagtattttaaagaatccacagggaaagattt-atacaatgggtaaa-gaaatgatgaattttaggagacagatgtagaaactgccattttaaaaagccgaacggaaatgctggaactgaaaaatacaatatcgttgacccttgaacaacaagggtttgaactgcatgggtccattgaatgtaga--tttttttcagtaaatatactggaaaatt--ttgtacctttgtgacaatttgaaaaaactcgcaaacttcatagcttagaaacatcaaaataattaagaaacaattaggcatatcataaatgcataaaacatacgtagatactagcatattttatcatttactataaaatatacacaaatctattataaaaagttaaaatttatttaaactcacacacaaatacttataaacaatcataaaatacagtattaaatcataactgcataaaattagtcatagtacattctgtcctactataataattgtgtagccacctcctgttactattgggtgagctcaagtgttgggagtacgggattaaaatgtcatgtaatactaatcattcccacgtaagcagttcgtcttctctttaggaaaaagtgatgtctcacggttcttgcggttgtcctgtttttgttttgtttgtttgtttattacagagttttgctctgtcgtcaaggctggagtgcagtggcacgatctcagctcactgcaacctctgcctcccaggttcaagtgattatcctgcctcagcctcccaagtagctgggattagaggcatgcaccaccacgcccagctaatttttgtatttttagtagagacggtctttggttcaaga---cggccaggctggtcttgaactcctgacctcaagtgatcca-cccccctcggcctcccaaagtgctgggattacaggtgtgagccactgcgcccaggatcttgtgtatttttaattgtgtttagtgcaattccataaagcctgaataacaccacgagacccatatagtgatgctgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30028791 1063 + 173848474 aacgccacccaagtattagaattatcagatggagactttaaaatcactatagtattttaaagaatccacagggaaagattt-atacaatgggtaaa-gaaatgatgaattttaggagacagatgtagaaactgccgttttaaaaagccgaacggaaatgctggaactgaaaaatacaatatcgttgacccttgaacaacaagggtttgaactgcatgggtccattgaatgtaga--tttttttcagtaaatatactggaaaatt--ttgtacctttgtgacaatttgaaaaaactcgcaaacttcatggcttagaaacatcaaaataattaagaaacaattaggcatatcataaatgcataaaacatacgtagatactagcatattttatcatttactataaaatatacacaaatctattataaaaagttaaaatttatttaaactcacacacaaatacttataaacaatcataaaatacagtattaaatcataactgcataaaattagtcatagtacattctgtcctactataataattgtgtagccacctcctgttactattgggtgagctcaagtgttgggagtacgggattaaaatgtcatgtaatactaatcattcccacgtaagcagttcgtcttctctttaggaaaaagtgatgtctcatggttcttgcggttgtcctgtttttgttttgtttgtttgtttattacagagttttgctctgtcgtcaaggctggagtgcagtggcacgatctcagctcactgcaacctctgcctcccaggttcaagtgattatcctgcctcagcctcccaagtagctgggattagaggcatgcaccaccacgcccagctaatttttgtatttttagtagagacggtctttggttcaaga---cggccaggctggtcttgaactcctgacctcaagtgatcca-cccccctcggcctcccaaagtgctgggattacaggtgtgagccactgcgcccaggatcttgtgtatttttaattgtgtttagtgcaattccataaagcctgaataacaccacgagacccatatagtgatgctgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5832176 1064 +   6154872 aacgccacccaaatgttagaattatcagatggagactttaaaatcactatagtattttaaagaatccacagggaaagattt-atacaatgggtaaa-gaaatgatgaattttaggagacagatgtagaaactgccattttaaaaagccaaacggaaatgctggaactgaaaaatacaatatcgttgacccttgaacaacaagggtttgaactgcatgggtccattcaatgtaga--tttttttcagtaaatatactggaaaatt--ttgtacctttgtgacaatttgaaaaaacttgcaaacttcatagcttagaaacatcaaaataattaagaaactattaggcatatcataaatgcataaaacatacgtagatactagcatattttatcatttactataaaatatacacaaatctattataaaaagttaaaatttattaaaactcacacacaaatacttataaacaatcataaaatacagtattaaatcataactgcataaaattagtcatagtacattctgtcctactataataatcatgtagccacctcctgttactattgggtgagctcaagtgttgggagtatgggattaaaatgtcatgtaatactaatcattcccacgtaagcagttcgtcttctctttaggaaaaagtgatgtctcacggttcttgaggttgttctgtttttgttttgtttgtttgtttattacagagttttgctctgccatccaggctggagtgcagtggcacgatctcagctcactgcaacctctgcctcccgggttcaagtgattatcctgcctcagcctcccaagtagctgggattagaggcatgcaccaccacgcctggctaatttttgtatttttagtagaaacgttctttggttcaaga---cggccaggctggtcttgaactcctgacttcaagtgatccaccccccctcggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccaggatcttgtgtatttttaattgtgtttagtgcaattccataaagcctgaataacaccacgagacccatatagtgatgctgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74558669 1048 + 122973662 aacgccacccaaatgttagaattatcagatggacactttaaaatcactatagta-tttaaagaatccacagggaaagctccaatgtggtgg--aat-tcaatgatgaattttaggagagagatgtagaaactgccattttaaaaagccaaacggaaatgctggaactgaaaaatacaatatagttgacccttgaacaacaagggtttgaactgcatgggtccattaaatgtaga--tttttttcaataaatatactggaaaatttgttgtacatttgtgacaatttgaaaaaactcacaaacttcatagcttagaaacatcaaaataattaagaaacaattaggtatatcataaatgcataaaatatatgtagatactagcatactttatcatttactataaaatatacacaaatctattataaaaagttaaaacttattaaa----gcacacaaatacgtataaacaatcataaaatacagtattaaatcataactgcat-aaattagtcacagtacatactgtcctactataataattgtgtagccacctccgattactattgggtgagctcaagtgttgggagtatgggattaaaatgccatgtaatactaatcattcccatgtaaacagttcatcttctctttaggaaaaagagaagt-tcatggttcttgcagttgttctgtttttgttttgcttgtttgtttattacagagttttgctctgtcatccaggctggagtacagtggcacgatctcagctcactgcaacctctgcctcctgggtccgagtgattatcctgcctcagcctcccaagtagctgggattagaggcgtgcaccatcactcctggctaatttttttatttttagtagagacgg----ggtttcacgatgttggccaggctgg--------tcctgacctcaagtgatcca-cccccctcggcctcccaaagtgctgggattacaggtgtgagccaccgtgcccaggatcttgtgtatttttaattgtgtttagtggaattccataaagcctgaataacaccatgagacccatatagtgatgctgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30024286 1063 + 172585720 aacgccacccaaatgttagaattatcagatggagactttaagatcactatagtattttaaagaatctacagggaaagactt-atacaatgggtaacaaaaatgacgaattttaggagacagatgtagaaactgccatttt-aaaagccaaacggaaacgttggaactgaaaaatacaataGagttgacccttgaacaacaagggtttgaactgcatgggtccattaaatgtagatttttttttcagtaaatatactggaaaattttttgtacatttgtgacagtttgaaaaaactcacaaacttcatagcttagaaatatcaaaataattaagaaacaattaggtatatcataaatgcataaaatacatgtagatactagcatactttatcatttactataaaatatacacaaatctattataaaaagttaaaatttattaaaac--acacacaaatacttataaacaatcataaaatgcagtattaaatcaaaactgcataaaattagtcatagtacatattgtcctactataataattgtgtagccagctcctgttacta-agggtgagctcaagtgttgggagtatgggattaaaataccatgtaatactaatcattcccatgtgagtagttcatcttctctttaggaaaaagtgatgtctcacagttcttgtggttgttctgtttttgttttgtttgtttgtttgttacagagttttgctctgtcatctaggctggagtgcagtggcacgatctcggctcactgcaacctctgcctcctgggttcaagtggttatcctgcctcagcctcccaagtagctgggattagaagcatgcaccaccacgcctggctaatttttgtatttttagtagagacgg----ggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatcca-ctcccgtcggcctcccaaagtgctgggattacaagtgtgagccaccgcacccaggatcttgtgtatttttaattgtgtttagtgcaattccataaagcttgaataacaccatgagacccatatagtgatgctgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29688172 1061 - 170955103 aacgccacccaaatgttagaattatcagatggagactttaagatcactatagtattttaaagaatctacagggaaagattt-atacaatgggtaac-aaaatgacgaattttaggagagagatgtagaaactgccatttt-aaaagccaaacggaaatgctggaactgaaaaatacaataGagttgacccttgaacaacaagggtttgaactgcatgggtccattaaatgtagatttttttttcagtaaatatactggaaaattttttgtacatttgtgacagtttgaaaaaactcacaaacttcatagcttagaaatatcaaaataattaagaaac-attaggtatatcataaatgcataaaatacatgtagatactagcatactttatcatttactataaaatatacacaaatctattataaaaagttaaaatttattaaaac--acacacaaatacttataaacaatcataaaatgcagtattaaatcaaaactgcataaaattagtcatagtacatattgtcctactataataattgtgtagccagctcctgttacta-agggtgagctcaagtgttgggagtatgggattaaaataccatgtaatactaatcattcccatgtgagtagttcatcttctctttaggaaaaagtgatgtctcacagttcttgtggttgttctgtttttgttttgtttgtttgtttgttacagagttttgctctgtcatctaggctggagtgcagtggcacgatctcggctcactgcaacctctgcctcctgggttcaagtggttatcctgcctcagcctcccaagtagctgggattagaagcatgcaccaccacgcctggctaatttttgtatttttagtagagacgg----ggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatcca-ctcccgtcggcctcccaaagtgctgggattacaagtgtgagccaccgcacccaggatcttgtgtatttttaattgtgtttagtgcaattccataaagcttgaataacaccatgagacccatatagtgatgctgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2734311 1061 -   2996164 aacgccacccaaatgttagaattatcagatggagactttaagatcactatagtattttaaagaatctacagggaaagattt-atacaatgggtaac-aaaatgacgaattttaggagagagatgtagaaactgccatttt-aaaagccaaacggaaacgctggaactgaaaaatacaatGGagttgacccttgaacaacaagggtttgaactgcatgggtccattaaatgtagatttttttttcagtaaatatactggaaaattttttgtacatttgtgacagtttgaaaaaactcacaaacttcatagcttagaaatatcaaaataattaagaaac-attaggtatatcataaatgcataaaatacatgtagatactagcatactttatcatttactataaaatatacacaaatctattataaaaagttaaaatttattaaaac--acacacaaatacttataaacaatcataaaatgcagtattaaatcaaaactgcataaaattagtcatagtacatattgtcctactataataattgtgtagccagctcctgttacta-agggtgagctcaagtgttgggagtatgggattaaaataccatgtaatactaatcattcccatgtgagtagttcatcttctctttaggaaaaagtgatgtctcacagttcttgtggttgttctgtttttgttttgtttgtttgtttgttacagagttttgctctgtcatctaggctggagtgcagtggcacgatctcggctcactggaacctctgcctcctgggttcaagtggttatcctgcctcaacctcccaagcagctgggattagaagcatgcaccaccacgcctggataatttttgtatttttagtagagacgg----ggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatcca-ctcccgtcggcctcccaaagtgctgggattacaagtgtgagccactgcacccaggatcttgtgtatttttaattgtgtttagtgcaattccataaagcttgaataacaccatgagacccatatagtgatgctgg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     485092 1055 +    766320 aacaccatccaaatgttagaattaccagatggagactttgagatcactatagtattttaaagaatccacagggaaagattt-atacaatgggtaaa-aaaatgacgaattttaggagagagatgtagaaactgccatttt-aaaagccaaacggaaacgctggaactgaaaaatacaatatagttgacccttgaacaacaagggtttgaactgcatgggtccattaaatgtaga-ttttttttcagtaaatatactggaaaattttttgtacatttgtgacggtttgaaaaaactcgcaaacttcatagcttagaaatatcaaaataattaagaaacaattaggtatatcataaatgcataaaatacatgtagatactagcatactttatcatttactataaaatatacacaaatctattataaaaagttaaaatttattaaaac--acacacaaatacttataaacaatcataaaatgcagtattaaatcaaaactgcataaaattagccatagtacatattgtcctactataataattgtgtagccagctcctgttacta-agggtgagctcaagtgttgggagtatgggattaaaataccatgtaatactaatcattcccatgtgagtagttcatcttctctttaggaaaaagtgatgtctcatggttcttgtggttgttctgtttttgt----tttgtttgtttgttacagaattttgctctgtcatccaggctggagtgcagtggcacaatctcgg--cactgcaacctctgcctcctgggttcaagtgattatcctgcctcagcctcccaagtagctgggattagaagcgtgcaccaccacgcctggctaatttttgtatttttagtagagacgg----ggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatccacctcccgtcggcctcccaaagtgctgggattacaagtgtgagccacc-cgcccaggatcttgtgtatttttaattgtgtttagtgcaattccataaagcttgaataacaccatgagacccatatagtgatgctgg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28942976 1058 -  71996105 aacgccacccaaatgttagaattatcagatggagactttaagatcactatagtattttaaagaatccacagggaaagactt-atacaatgggtaaa-aaaa-gatgaattttaggagagagatgtagaaactgccatttt-aaaagccaaacggaaacactggaactgaaaaatacaataGagttgacccttgaacaacaagggtttgaactgtatgggtccattaaatgtaga-ttttttttcagtaaatatactgaaaaattttttgtacatttgtgacagtttgaaaaaactcgcaaacttcatagcttagaaatacc-aaataattaagaaacaattaggtatatcataaacacataaaatacatgtagatactagcatactttatcatttactataaaatatacacaaatctattataaaaagttaaaatttattaaaac--acacacaaatacttataaacaatcataaaatgcagtattaaatcaaaactgcataaaattagtcatagtacatattgtcctactataataattgtgtagccagctcctgttacta-agggtgagctcaagtgttgggagtatggaattaaaataccatgtaatactaatcattcccatgtgagtagttcatcttctctttaggaaaaagtgatgtctcacggttcttgtggttgttctgtttttgttttgtttgtttgtttgttacagagttttgctctgtcatctaggctggagtgcagtggcacgatctcggctcactgtaacctctgcctcctgggttcaagtgattatcctgcctcagcctcccaagtagctgggattagaagcatgcaccaccacgcctggctaatttttgtaattttagtagagacgg----ggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatcca-ctcccgtcggcctcccaaagtgctgggattacaagtgtgagccactgcacccaggatcttgtgta-ttttaattgtgtttagtgcaattccataaagcttaaataacaccatgagacccacatagtgatgctgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     119015 1054 +    290775 aacaccacccaaatgttagaattaccagatggagactttaagatcactatagtattttaaagaatccacagggaaagattt-atacaatgggtaaa-aaaatgacgaattttaggagagagatgtagaaactgccatttt-aaaagccaaacggaaacgctggaactgaaaaatacaatatagttgacccttgaacaacaagggtttgaactgcatgggtccattaaatgtaga-ttttttttcagtaaatatactggaaaattttttgtacatttgtgacagtttgaaaaaactcgcaaacttca-agcttagaaatatcaaaataattaagaaacaattaggtatatcataaatgcataaaatacatgtagatactagcatactttatcatttactataaaatatacacaaatctattataaaaagttaaaatttattaaaac--acacacaaatacttataaacaatcataaaatgcagtattaaatcaaaactgcataaaattagtcatagtacatattgtcctactataataattgtgtagccagcttctgttacta-agggtgagctcaagtgttgggagtatgggattaaaataccatgtaatactaatcattcccatgtgagtagttcatcttctctttaggaaaaagtgatgtctcatggttcttgtggttgttctgtttttgt----tttgtttgtttgttacagagttttgctctgtcatccaggctggagtgcagtggcacaatctcgg--cactgcaacctctgcctcctgggttcaagtgattatcctgcctcagcctcccaagtagctgggattagaagcgtgcaccaccacgcctggctaatttttgtatttttagtagagacgg----ggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatcca-ctcccgtcggcctcccaaagtgctgggattacaagtgtgagccaccgcgcccaggatcttgtgtatttttaattgtgtttagtgcaattccataaagcttgaataacaccatgagacccatatagtgatgctgg
i manLeu1.NW_012099233v1   C 0 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518579 45539 +    730504 I
e saiBol1.JH378357           170526 82273 -    242197 T
e otoGar3.GL873550            56900 4956 +  18854210 I
e colAng1.NW_012115566v1    2566644 1526 -   3067355 I

a score=5480552.000000
s hg38.chr6_GL000254v2_alt   832403  998 +   4827813 aagttttccctggagacagagaaaagccataacattacaggaaaaagttgaattgcttgatat-gtgctatagattgaggtctgctgctgcagtttcctgccatttctgactgatgtttcatc-tcttaacagatgacacaaacttacataattgataaatacggtattgtactgtcagtgtattttctcttccttataattttcttaataacattttcttttctctggctcatgttattgtaagaatacagtatataatacatacaacatacaaaatatgtgtcagtcaactgtatatatgatcagtaaggcttctggttaacagtagtttattagtagttaaggtttaggggagtcaaaagttattcatggatttccaaatgtatgagggggtcagcacctctaacccatgca-ttgttcaagggtcagctgTatacgactttctggtaaaaagaaccaggagtccttggagagatggttgatcccagacagaggaaagagaacatacaagataaccctggaatactgtatgatgccagaaactaaagaagtcatta-aaaaaaaaaatgaggacacatcaaaaaactcacagtaatcacgttaaaggatttccccatagccaagtctgggaaaatgtaaacagcaaagtaaataatgagaataatgaagaaagaataaaataaacatccaggagtcattactggatatgaataaagaaaataaacagtaaacgaataggaggagagggacagctcttacaaaattcaaaataacaaacataggagaaatgatgaaagttatcattaggcaaacagcccaatagtaattgttacagtcaaaactcatttgtggatgctaaaattagtaggcaaaactataatgagaaaaag-atacttgcataatctcaaagtattaccataaatacttattaTGTTAC----TTATATTATTATAAGATATGACTACAGTTTTAATAagac----aacacagtt-aaaaaaatgaaaaa
s panTro5.chr6             29795212 1004 + 175400573 aagttttccccggagacagagaaaagccataacattacaggaaaaagttgaattgcttgatat-gtgctatagattgaggtctgctgctggagtttcctgccatttctgactgatgtttcatcttcttaacagatgacacaaacttacataattgataaatacagtattgtactgtcagtgtattttctcttccttataattttcttaataacattttcttttctctggctcacgttattgtaagaatacagtatataatacatacaacatacaaaatatgtgtcagtcaactgtatatatgatcagtaaggcttctggttaacagtagtttattagtagttaaggtttaggggagtcaaaagttattcatggatttccaaatgtatgagggggtcagcacctctaacccacgca-ttgttcaaaggtcaactgTatacgattttctggtaaaaagaaccaggagtccttggagagatggttgatcccagagagaggaaagagaacatacaagataaccttggaatactgtatgatgccagaaactaaagaagtcattt-aaaaaaaaaatgaggacatatcaaaaaactcacagtaatcaagttaaaggatttccccatagccaagtctgggaaaatgtaaacagcaaagtaaataatgagaataatgaagaaagaataaaataaacatccaggagtcattactggatgtgaataaagaaaataaacagtaaacgaacaggaggagagggacagctcttacaaaattcaaaataacaaacataggagaaatgatgaaagttatcattaggcaaacagcccaatagtaattgttgcagtcaaaactcatttgtggatgctaaaattcgtaggcaaaactataatgagaaaaag-atacttgcataatctcaaagtattaccataaatacttattatattacTTTATTATATTATTATAAGATATGACTACAGTTTTTATAagac----aacacagttaaaaaaaatgaaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30029854 1003 + 173848474 aagttttccccggagacagagaaaagccataacattacaggaaaaagttgaattgcttgatat-gtgctatagattgaggtctgctgctggagtttcctgccatttctgactgatgtttcatcttcttaacagatgacacaaacttacataattgataaatacagtattgtactgtcagtgtattttctcttccttataattttcttaataacattttcttttctctggctcacgttattgtaagaatacagtatataatacatacaacatacaaaatatgtgtcagtcaactgtatatatgatcagtaaggcttctggttaacagtagtttattagtagttaaggtttaggggagtcaaaagttattcatggatttccaaatgtatgagggggtcagcacctctaacccacgca-ttgttcaaaggtcaactgTatacgattttctggtaaaaagaaccaggagtccttggagagatggttgatcccagagagaggaaagagaacatacaagataaccctggaatactgtatgatgccagaaactaaagaagtcattt--aaaaaaaaatgaggacatatcaaaaaactcacagtaatcaagttaaaggatttccccatagccaagtctgggaaaatgtaaacagcaaagtaaataatgagaataatgaagaaagaataaaataaacatccaggagtcattactggatgtgaataaagaaaataaacagtaaacgaacaggaggagagggacagctcttacaaaattcaaaataacaaacataggagaaatgatgaaagttatcattaggcaaacagcccaatagtaattgttgcagtcaaaactcatttgtggatgctaaaattcgtaggcaaaactataatgagaaaaag-atacttgcataatctcaaagtattaccataaatacttattatattacTTTATTATATTATTATAAGATATGACTACAGTTTTTATAagac----aacacagttaaaaaaaatgaaaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5833240  997 +   6154872 aagttttccccggagacagagaaaagccataacattacaggaaaaagttgaattgcttgatat-gtgctatagattgaggtctgctgctgcagtttcctgccatttctgactgatgtttcatc-tcttaacagatgacacaaacttacataattgataaatacggtattgtactgtcagtgtattttctcttccttataattttcttaataacattttcttttctctggctcacgttattgtaagaatacagtataaaatacatacaacatacaaaatatgtgtcagtcaactgtgtatatgatcagtaaggcttctggttaacagtagtttattagtagttaaggtttaggggagtcaaaagttattcatggatttccaaatgtatgagggggtcagcacctctaacccacgca-ttgttcaagggtcaactgTatacgattttctggtaaaaagaaccaggagtccttggagagatggttgatcccagagagaggaaagagaacatacaagataaccctggaatactgtatgatgccagaaactaaagaagtcattt--aaaaaaaaatgaggacacatcaaaaaactcacagtaatcacgttaaaggatttccccatagccaagtctgggaaaatgtaaacagcaaagtaaataatgagaataatgaagaaagaataaaataaacatccaggagtcattactggatatgaataaagaaaataaacagtaaacgaataggaggagagggacagctcttacaaaattcaaaataacaaacataggagaaatgatgaaagttatcattaggcaaacagcccaatagtaattgttacagtcaaaactcatttgtggatgctaaaattagtaggcaaaactataatgagaaaaag-atacttgcataatctcaaagtattaccataaatacttattaTAGTAC----TTATATTATTATAAGATATGACTACAGTTTTAATAagac----aacacagtt-aaaaaaatgaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74559717 1008 + 122973662 aagttttcccaggagacggagaaaagccataacattacaggaaaaagctgaattgcttgatat-gtgctgtagattgaggtctgctccggcagtttcctgccatttctgactgatgattcatcttcttaacagatggcacaaacttacataatcgataaatacagtattatactgtcagtgtattttctcttccttataattttcttaataacattttcttttctctggctcacgttattgtaagaatacagtatataatacatacaacatacaaaatatgtgttggtcaactgtttatatgatcagtaaggcttctggtcaacagtaggttattagtagttaaggtttaggggagtcaaaagttattcatggatttccaaatgtatgaggaggtcagcacctctaacccacgca-ttgttcaagggtcaactgTatacaattttctggtaaaaagaaccaggagtccttggagatatggttgatcccagagagaggaaagagaacatacaagataacactggaatactgtatggtgccagaaactaaagaagtgatttttaaaaaaaaatgaggacatatcaaaaaactcacagtaatcaagttaaaggatttccccatagccaaatctgggaaaaggtaagcagcaaagcaaataatgagaataacgaagaaagaataaaataaacatccaggaatcattactggatatgaataaagaaaataaacagtaaacgaataggaggagaggaacagctcttacagaattcaaaataacaaacagaagagaaatgatgaaagttatcattaggcaaagagcccagtagtaattgttacagtcaaaactcatttgtggatgctaaaattagtaggcaaagctataataagaaaaag-atacttgcataatctcaaagtattaccataaatacttattatattacTTTATTATATTATTATAAGATATGACTACAGTTTtaataagacaaataacacagta-aaaaaaatgaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30025349  995 + 172585720 aagttctcccaggagac-----aaagtcataacattacaggaaaaagttgaattgcttgatat-gtgctgtagattgaggtctgctgctgcagtttcctgccatttctgactgatgattcatcttcttaagagatgacacaaacttacataattg----atacagtattgtactgtcagtgtattttctcttccttataattttcttaataacattttattt--tctctctcacgttattgtaagaatacagcatgtaatacatacaatatacaaaatatgtgttggtcaattgtttatatgatcagtaaggcttctggtcaacagtaggttattagtagttaaggtttacgtgagtcaaaagttattcatggatttccaaatgtatgagggggtcagcacctctaacccacaca-ttgttcaagggtcgactgTatatgattttctggtaaaaagaaccaggagtccttggagagatggttgatcccagagagaggaaagagaacatacaagataaccctggaatactgtatagtgctggaaactaaagaagtgattt--taaaaaaaatgaggacatatcaacaaattcacagtaatcaagttaaaggatttccccatagccaaatctgggaaaacttaagcagcaaagaaaataatgagaatactggagaaagaataaaataaatatccaggagtcattactggatatgaataaagaaaataaacagtaaacgaataggaggagaggaacagctcttacagaattcaaaataacaaacataggagaaatgatgaacgttatcactaggcaaacagcccaatagtaattgttacagtcaaaactcatttgtggatgctaaaattagtaggcaaaactataatgtgtaaaag-atacttgcataatctcaaagtattaccataaatacttattatattacTTTATTATATTATTATAAGATATGACTACAGTTTtaataggacaaataacacagtt-taaaaaatgaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29689233  996 - 170955103 aagttctcccaggagac-----aaagtcataacattacaggaaaaagttgaattgcttgatat-gtgctgtagattgaggtctgctgctgcagtttcctgccatttctgactgatgattcatcttcttaagagatgacacaaacttacataattg----atacagtattgtactgtcagtgtattttctcttccttataattttcttaataacattttattt--tctctctcacgttattgtaagaatacagcatgtaatacatacaatatacaaaatatgtgttggtcaattgtttatatgatcagtaaggcttctggtcaacagtaggttattagtagttaaggtttacgtgagtcaaaagttattcatggatttccaaatgtatgagggggtcagcacctctaacccacaca-ttgttcaagggtcgactgTatatgattttctggtaaaaagaaccaggagtccttggagagatggttgatcccagagagaggaaagagaacatacaagataaccctggaatactgtatagtgctggaaactaaagaagtgattt-aaaaaaaaaatgaggacatatcaacaaattcacagtaatcaagttaaaggatttccccatagccaaatctgggaaaatttaagcagcaaagaaaataatgagaatactggagaaagaataaaataaatatccaggagtcattactggatatgaataaagaaaataaacagtaaacgaataggaggagaggaacagctcttacagaattcaaaataacaaacataggagaaatgatgaacgttatcactaggcaaacagcccaatagtaattgttacagtcaaaactcatttgtggatgctaaaattagtaggcaaaactataatgtgtaaaag-atacttgcataatctcaaagtattaccataaatacttattatattacTTTATTATATTATTATAAGATATGACTACAGTTTtaataggacaaataacacagtt-taaaaaatgaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2735372  996 -   2996164 aagttctcccaggagac-----aaagtcataacattacaggaaaaagttgaattgcttgatat-gtgctgtagattgaggtctgctgctgcagtttcctgccatttctgactgatgattcatcttcttaagagatgacacaaacttacataattg----atacagtattgtactgtcagtgtattttctcttccttataattttcttaataacattttattt--tctctctcacgttattgtaagaatacagcatgtaatacatacaatatacaaaatatgtgttagtcaattgtttatatgatcagtaaggcttctggtcaacagtaggttattagtagttaaggtttacgtgagtcaaaagttattcatggatttccaaatgtatgagggggtcagcacctctaacccacaca-ttgttcaagggtcgactgTatatgattttctggtaaaaagaaccaggagtccttggagagatggttgatcccagagagaggaaagagaacatacaagataaccctggaatactgtatagtgctggaaactaaagaagtgatta-aaaaaaaaaaagaggacatatcaacaaattcacagtaatcaagttaaaggatttccccatagccaaatctgggaaaatttaagcagcaaagaaaataatgagaatactggagaaagaataaaataaatatccaggagtcattactggatatgaataaagaaaataaacagtaaacgaataggaggagaggaacagctctcacagaattcaaaataacaaacatacgagaaatgatgaacgttatcactaggcaaacagcccaatagtaattgttacagtcaaaactcatttgtggatgctaaaattagtaggcaaaactataatgtgtaaaag-atacttgcataatctcaaagtattaccataaatacttattatattacTTTATTATATTATTATAAGATATGACTACAGTTTtaataggacaaataacacagtt-taaaaaatgaaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     486147  983 +    766320 aagttctcccaggagacagagaaaagtcgtaacattacaggaaaaagttgaattgcttgatatggtgctgtagattgaggtctgctgctgcagtttcctgccatttctgactgatgattcatcttcttaagagatgacacaaaattacataattg----atacagtattgtactgtcagtgtattttctct--cttataattttcttaataacattttattt--tctttctcacgttattgtaagaatacagtatataat--atacaacatac-aaatatgtgttagtcaattgtttatatgatcactaaggcttct-gtcaacagtaggttattagtagttaaggtttacatgagtcaaaagttattcatggatttccaaatgtatgaggggg-cagca-ctctaacccatgcatttgttcaagggtcgactgTGTATGattttctggtaaaaagaacca-gagtccttggagagatggttgatcccagagagaggaaagag-acataca--ataaccctggaatactgtatggtgccagaaactaaagaa-tgattaaaaaaaaaaaattaggacataccaaaaaattcacagtaatcaagttaaagga-ttccccatagccaaatc-gggaaaatttaagcagcaaagaaaataatgagaataat-gagaaagaataaaataa--atccaggagtcattactggataataataaagaaaataaacagt-aacgaataggaggaaagaaacagctcttacagaattcaaaaatacaaacatacgagaaatgatgaaagttatcactaggcaaacagcccaatagtaattgttacagtcaaaactcatttgtggatgctaaaatta-taggcaaaactataatgtgtaaaagaatacttgcataatctcaaagtattaccataaatacttattatattacTTTATTATATTATTAT-AGATATGACTACAGTTTtaataagacaaataacacagtt-taaaaaatgaaaa-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28944034  998 -  71996105 aagttctcccaggagacagagaaaagtcataacattacaggaaaaagttgaattgcttggtat-gtgctgtagattgaggtctgctgctgcagtttcctgccatttctgactgatgattcatcttcttaagagatgacacaaacttacataattg----atacggtattgtactgtcagtgtattttctcttccttataattttcttaataacattttattttctctgtctcacgttattgtaagaatacagtatataatacatacaacctacaaaatatgtgttagtcaattgtttatatgatcagtaaggcttctggtcaacagtaggttattagtagttaaggtttacatgagtcaaaagttattcatggctttccaaatgtatgagggggtcagcacctctaacccacgca-ttgttcaagggtcgactgTatatgattttctggtaaaaagaaccaggagtccttggagagatggttgatcccagagagaggaaagagaacatacaagataaccctggaatactgtatggtgccagaaactaaagaagtgatt--tttaaaaaaatgaggacatatcaaaaaattcacagtaatcaaattaaaggatttccccatagccaaatctgggaaaatttaagcagcaaagaaaataatgagaataatggagaaagaataaaataaatatccaggagtcattactggatatgaataaagaaaataaacagtaagcgaataggaggaaagaaacagctcttacagaattcaaaataacaaacataggagaaatgatgaaagttatcactaggcaaacagcccaatagtgattgttacagtcaaaactcatttgtggatgctaaaattagtaggcaaaactataatgtgtaaaag-atacttgcataatctcaaagtattaccataaatacttattatattacTTTATTATATTATTATAAGATATGACTACAGTTTTAATAagac----aacacagtt-taaaaaatgaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     120069 1001 +    290775 aagttctcccaggagacagagaaaagtcataacattacaggaaaaagttgaattgcttgatat-gtgctgtagattgaggtctgctgctgcagtttcctgccatttctgactgatgattcatcttcttaagagatgacacaaaattacataattg----atacagtattgtactgtcagtgtattttctcttccttataattttcttaataacattttattt--tctgtctcacgttattgtaagaatacagtatataatacatacaacatacaaaatatgtgttagtcaattgttcatatgatcagtaaggcttctggtcaacagtaggttattcgtagttaaggtttacatgagtcaaaagttattcatggatttccaaatgtatgagggggtcagcacctctaacccatgca-ttgttcaagggtcgactgTGTATGattttctggtaaaaagaaccaggagtccttggagagatggttgatcccagagagaggaaagagaacatacaagataaccctggaatactgtatggtgccagaaactaaagaagtgattaaaaaaaaaaaattaggacatatcaaaaaattcacagtaatcaagttaaaggattt-cccatagccaaatctgggaaaatttaagcagcaaagaaaataatgagaataatggagaaagaataaaataaatatccaggagtcattactggatatgaataaagaaaataaacagtaaacgaataggaggaaagaaacagctcttacagaattcaaaataacaaacacacgagaaatgatgaaagttatcactaggcaaacagcccaatagtaattgttacagtcaaaactcatttgtggatgctaaaattagtaggcaaaactataatgtgtaaaag-atacttgcataatctcaaagtattaccataaatacttattatattacTTTATTATATTATTATAAGATATGACTACAGTTTTAATAAGACAAATAACACAGTT-TAAAAAATGAAAAA
i manLeu1.NW_012099233v1   C 0 M 1045
s colAng1.NW_012115566v1    2568170 1003 -   3067355 aagttctcccaggagacatagaaaagtcgtaacattacaggaaaaagttgaattgcttgatat-gtgttgtagattgaggtctgctgctgcagtttcctgccatttctgactgatgattcatcttcttaagagatggcacaaacttacataattg----atacagtattttactgtcagtgtattttctcttccttataattttcttaataacattttattttctctgtctcatgttattgtaagaatacagtatataatacatacaacatacaaaatatgtgttagtcaattgtttatatgatctgtaaggcttctggtcaacagtaggttattagtagttaaggtttacgtgagtcaaaagttattcatggatttccaaatgtatgaggggatcagcacctctaacccatgca-ttgttcaagggtcgactgTatatgattttctggtaaaaagaaccaggagtccttggagagatggttgatcccagagagaggaaagagaacatacaagataaccctggaatactgtatggtgccagaaactaaagaagtgattt-ttaaaaaaaatgaggacataccaaaaaattcacagtaatcaagttgaaggatttccccatagccaaatctgggaaaatttaagcagcaaacaaaataaagagaataatggagaaagaataaaataaacatccaggagtcattactggatatgaataaagaaattaaacagtaaacgaataggaagagaggaacagctcttacagaattcaaaataacaaacataggagacatgatgaaagttatcactaggcaaacagcccaatagtaattgttacagtcaaaactcatttgtggatgctaaaattagtaggcaaaactataatgtgtaaaag-atacttgcacaatctcaaagtattaccataaatacttattatattacTTTATTATATTATTATAAGATATGACTACAGTTTtaataagacaaataacacagct-taaaaattgaaaaa
i colAng1.NW_012115566v1   I 1526 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518579 45539 +    730504 I
e saiBol1.JH378357           170526 82273 -    242197 T
e otoGar3.GL873550            56900 4956 +  18854210 I

a score=255816.000000
s hg38.chr6_GL000254v2_alt   833401 53 +   4827813 taatttgaataaaagacacgtaaggaccaataaagcacatgataagatgttta
s panTro5.chr6             29796216 53 + 175400573 taatttgaataaaagacatgtaaggaccaataaagcacatgataagatgttta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30030857 53 + 173848474 taatttgaataaaagacatgtaaggaccaataaagcacatgataagatgttta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5834237 53 +   6154872 taatttgaataaaagacatgtaaggaccaataaagcacatgataagatgttta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74560725 53 + 122973662 taatttgaataaaagacatgtaaggaccaataaagcacatgataagatgttta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30026344 53 + 172585720 taatttgaataaaagacaggtaaggaccaataaagcacatgataagatgttta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29690229 53 - 170955103 taatttgaataaaagacaggtaaggaccaataaagcacatgataagatgttta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2736368 53 -   2996164 taatttgaataaaagacaggtaaggaccaataaagcacatgataagatgttta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     487130 52 +    766320 -aaattgaataaaagacaggtaaggatcaataaagcacatgataagatgttta
i cerAty1.NW_012002711v1   C 0 I 1377
s chlSab2.chr17            28945032 53 -  71996105 taatttgaataaaagacaggtaaggaccaataaaacatatgataagatgttta
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2569173 53 -   3067355 taatttgaataaaagacaggtaaggaccaataaagcacatgataagacattta
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518579 45539 +    730504 I
e saiBol1.JH378357           170526 82273 -    242197 T
e otoGar3.GL873550            56900 4956 +  18854210 I
e manLeu1.NW_012099233v1     121070 1045 +    290775 M

a score=1184955.000000
s hg38.chr6_GL000254v2_alt   833454 300 +   4827813 acaccattaaccatcacagagcaaattgaaacgacttgagggagcacttcacagccgatagaatgcctaaaaccaagagactgacaattccaagtattaccaaggatgtggaacatctggaactctcatcgctgtagggagtgtaaatggcacaatcactctggaaagcagtttagcagtttcttataaagataaacagacagcaaatgactcagaaattccaattctaggtatttacccaaaataaagaacacatgtgttcacacaaagaACGAAGAACCATATACAACACAACTAACT
s panTro5.chr6             29796269 300 + 175400573 acaccattaaccatcacagagcaaattgaaacgacttgagggagcacttcacagccgatagaatgcctaaaaccaagagacagacaattccaagtattaccaaggatgtggaacatctggaactctcattgctgtagggagtgtaaatggcacaatcactctggaaagcagtttagcagtttcttataaagataaacagacatcaaatgactcagaaattccaattctaggtatttacccaaaataaagaacacatgtgttcacacaaagaacaaagaactatatacaacacaactaact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30030910 300 + 173848474 acaccattgaccatcacagagcaaattgaaacgacttgagggagcacttcacagccgatagaatgcctaaaaccaagagacagacaattccaagtattaccaaggatgtggaacatctggaactctcattgctgtagggagtgtaaatggcacaatcactctggaaagcagtttagcagtttcttataaagataaacagacatcaaatgactcagaaattccaattctaggtatttacccaaaataaagaacacatgtgttcacacaaagaacaaagaactatatacaacacaactaact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5834290 300 +   6154872 acaccattaaccatcacagagcaaattgaaacaacttgagggagcacttcacagccgatagaatgcctaaaaccaagagactgacaattccaagtattaccaaggatgtggaacatctggaactctcatcgctgtagggagtgtaaatggcacaatcactctggaaagcagtttagcagtttcttataaagataaacagacatcaaatgactcagaaattccaattctaggtatttacccaaaataaagaacacatgtgttcacacaaagaacaaagaactatatacaacacaactaact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74560778 283 + 122973662 acaccattaaccatcacagagcaaactgaaacgacttgagggagcacttcacagccgatagaatgcctaaaaccaagagattgaca---------attaccaaggatgtggaacatctggaactctcattgctgtagggagtgtaaattgcacaatcactctggaaagcagtttagcagtttcttataa--------agacatcaaatgactcagaaattccaattctaggtatttacccaaaataaagaacgcatgtgttcacacaaagaacaaagaactatatacatcacaactaact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30026397 300 + 172585720 acaccattaaccatcacagagcaaactgaaacgacttgagggaatacctcgcagccgacagaatgcctaaaaccaagagattgacaattccaagcattaccaaggatgtggaacatctggaactctcattgctgtagggagcgtaaatggcacaatcactctggaaagcagtttagcagtttcttataaagataaacagacatcaaatgactcagaaattccaattctaggtatttacccaaaataaagagcacatgtgttcacacaaagatcaaagaactatatacaacacaactaact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29690282 300 - 170955103 acaccattaaccatcacagagcaaactgaaacgacttgagggaatacctcgcagccgacagaatgcctaaaaccaagagattgacaattccaagcattaccaaggatgtggaacatctggaactctcattgctgtagggagcgtaaatggcacaatcactctggaaagcagtttagcagtttcttataaagataaacagacatcaaatgactcagaaattccaattctaggtatttacccaaaataaagagcacatgtgttcacacaaagatcaaagaactatatacaacacaactaact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2736421 300 -   2996164 acaccattaaccatcacagagcaaactgaaacgacttgagggaatacctcgcagccgacagaatgcctaaaaccaagagattgacaattccaagcattaccaaggatgtggaacatctggaactctcattgctgtagggagcgtaaatggcacaatcactctggaaagcagtttagcagtttcttataaagataaacagacatcaaatgactcagaaattccaattctaggtatttacccaaaataaagagcacatgtgttcacacaaagatcaaagaactatatacaacacaactaact
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28945085 300 -  71996105 acaccattaaccatcgcagagcaaactgaaacaactggagggagcacttcgcagccgacagaatgcctaaaaccaagagattgacaattccaagcattaccaaggatgtggaacatctggaactctcattgctgtagggagcgtaaatggcacaatcattctagaaagcagcttagcagtttcttataaagataaacagacatcaaatgactcagaaattccaattctaggtatttacccaaaataaagaacacatgtgttcacacaaagaTCAAAGAACTATATACAACACAACTAACT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2569226 299 -   3067355 acaccattaaccatcacagagcaaactgaaacgacttgagggagcacttcgcagccgacagaatgcctaaaaccaagagattgacaattccaagcattaccaaggatgtggaacatctggaactctcattgctgtagggagcgtaaatggcacaatcactctggaaagcagtttagcagtttcttataaagataaacagacat-aaatgactcagaaattccaattctaggtatttacccaaaataaagagcacatgtgttcacacaaagaTCGAAGAACTATATACAACACAACTAACT
i colAng1.NW_012115566v1   C 0 I 6751
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518579 45539 +    730504 I
e saiBol1.JH378357           170526 82273 -    242197 T
e otoGar3.GL873550            56900 4956 +  18854210 I
e manLeu1.NW_012099233v1     121070 1045 +    290775 M
e cerAty1.NW_012002711v1     487182 1377 +    766320 I

a score=1980.000000
s hg38.chr6_GL000254v2_alt   833754 14 +   4827813 Gttctctccttctt
s panTro5.chr6             29796569  4 + 175400573 gttc----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30031210  4 + 173848474 gttc----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5834590  4 +   6154872 gttc----------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74561061  4 + 122973662 gttc----------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30026697 14 + 172585720 gctcacttcttctt
i rheMac8.chr4             C 0 I 1429
s macFas5.chr4             29690582 14 - 170955103 gctcacttcttctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2736721 14 -   2996164 gctcacttcttctt
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28945385  4 -  71996105 GCTC----------
i chlSab2.chr17            C 0 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518579 45539 +    730504 I
e saiBol1.JH378357           170526 82273 -    242197 T
e otoGar3.GL873550            56900 4956 +  18854210 I
e colAng1.NW_012115566v1    2569525 6751 -   3067355 I
e manLeu1.NW_012099233v1     121070 1045 +    290775 M
e cerAty1.NW_012002711v1     487182 1377 +    766320 I

a score=-592.000000
s hg38.chr6_GL000254v2_alt   833768 65 +   4827813 cttcttcttcttcttcttcctcttcctcttcctcttcctcttcctcttcctcttcctcttcttct
s macFas5.chr4             29690596 16 - 170955103 --tttttttttttttttt-----------------------------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2736735 16 -   2996164 --tttttttttttttttt-----------------------------------------------
i macNem1.NW_012011356v1   C 0 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518579 45539 +    730504 I
e saiBol1.JH378357           170526 82273 -    242197 T
e otoGar3.GL873550            56900 4956 +  18854210 I
e colAng1.NW_012115566v1    2569525 6751 -   3067355 I
e manLeu1.NW_012099233v1     121070 1045 +    290775 M
e chlSab2.chr17            28945389  0 -  71996105 C
e cerAty1.NW_012002711v1     487182 1377 +    766320 I
e rheMac8.chr4             30026711 1429 + 172585720 I
e nomLeu3.chr1a            74561065  0 + 122973662 C
e gorGor5.CYUI01015250v1    5834594  0 +   6154872 C
e panPan2.chr6             30031214  0 + 173848474 C
e panTro5.chr6             29796573  0 + 175400573 C

a score=6264.000000
s hg38.chr6_GL000254v2_alt   833833 38 +   4827813 tcttcttcttcttcttcttcttcttcttctttttttcG---
s panTro5.chr6             29796573 29 + 175400573 ---------acttcttcttcttcttctttttttttctg---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30031214 29 + 173848474 ---------acttcttcttcttcttcttcttttttctg---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5834594 28 +   6154872 ---------acttcttcttcttcttctt-ttttttttg---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74561065 23 + 122973662 ---------acttcttcttcttc------tttttttgt---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30028140 38 + 172585720 ---tctttttcttttttttttttttttttttttttttttGT
i rheMac8.chr4             I 1429 C 0
s macFas5.chr4             29690612 15 - 170955103 --------------------------tttttgtgtttgtgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2736751 18 -   2996164 -----------------------gtgtgtgtgtgtgtgtgt
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28945389 32 -  71996105 ---------ACTTCTTCTTTTTAATTTTTTTTTGTGTGtgt
i chlSab2.chr17            C 0 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518579 45539 +    730504 I
e saiBol1.JH378357           170526 82273 -    242197 T
e otoGar3.GL873550            56900 4956 +  18854210 I
e colAng1.NW_012115566v1    2569525 6751 -   3067355 I
e manLeu1.NW_012099233v1     121070 1045 +    290775 M
e cerAty1.NW_012002711v1     487182 1377 +    766320 I

a score=242393.000000
s hg38.chr6_GL000254v2_alt   833871 59 +   4827813 GAcccaggctgttgtgcagtggcatgatcatggctcactgcagcctcaacttcctgggc
s panTro5.chr6             29796602 59 + 175400573 gacccaggctgttgtgcagtggcatgatcatggctcactgcagcctcaacttcctgggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30031243 59 + 173848474 gacccaggctgttgtgcagtggcatgatcatggctcactgcagcctcaacttcctgggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5834622 59 +   6154872 gacccaggctgttgtgcagtggcatgatcatggctcactgcagcctcaacttcctgggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74561088 59 + 122973662 gacccaggctgttgtgcagtggcaggatcatggctcactgtagcctcaacttcctgggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30028178 59 + 172585720 GAcccaggctattgtgcagtggcatgatcatggctcactatagcctcgacttcctgggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29690627 59 - 170955103 gacccaggctattgtgcagtggcatgatcatggctcactatagcctcgacttcctgggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2736769 59 -   2996164 gacccaggctattgtgcagtggcatgatcatggctcactgtagcctcgacttcctgggc
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28945421 59 -  71996105 gacccaggctgttgtgcagtggcatgatcatggctcactgtagcctcgacttcctgggc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2576276 59 -   3067355 gacccaggctattgtgcagtggcatgatcatggctcactgtagcctcgacttcctgggc
i colAng1.NW_012115566v1   I 6751 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518579 45539 +    730504 I
e saiBol1.JH378357           170526 82273 -    242197 T
e otoGar3.GL873550            56900 4956 +  18854210 I
e manLeu1.NW_012099233v1     121070 1045 +    290775 M
e cerAty1.NW_012002711v1     487182 1377 +    766320 I

a score=1569451.000000
s hg38.chr6_GL000254v2_alt   833930 330 +   4827813 tcaagtgatc--ctcccacctcagccccccaagtagctgagactacaggatgcaccacgatgcccggccaatattttgtattattttgtagagacagggttatatcatgtttcccaggctggtctcaaactcctgggctcaagtatcctcccaccttggcctcccaaagttctgggattacagctgtgagccaccatacccAACAATTGTGgcttctttcatagcagcccaaaactagaaacaacccaaatgcccatcaatgcatgaatggataaactgtggtatatttatacagtgaaatactattagcaataaaaaggagcaaattacta
s panTro5.chr6             29796661 330 + 175400573 ccaagtgatc--ctcccacctcagccccccaagtagctgagactacaggatgcaccacgatgcccggccaatattttgtattattttgtagagacagggttatatcatgtttcccagtctggtctcaaactcctgggctcaagtatcctcccaccttggcctcccaaagttctgggattacaggtgtgagccaccatacccaacaattgtggcttctttcatagcagcccaaaactagaaacaacccaaatgcccatcaatgcatgaatggataaactgtggtatatttatacagtgaaatactattagcaataaaaaggagcaaattacta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30031302 330 + 173848474 tcaagtgatc--ctcccacctcagccccccaagtagctgagactacaggatgcaccacgatgcccggccaatattttgtattattttgtagagacagggttatatcatgtttcccagtctggtctcaaactcctgggctcaagtatcctcccaccttggcctcccaaagttctgggattacaggtgtgagccaccatacccaacaattgtggcttctttcatagcagcccaaaactagaaacaacccaaatgcccatcaatgcatgaatggataaactgtggtatatttatacagtgaaatactattagcaataaaaaggagcaaattacta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5834681 330 +   6154872 tcaagtgatc--ctcccacctcagccccccaagtagctgagactacaggatgcaccacgatgcccggccaatattttgtattattttgtagagacagggttatatcatgtttcccaggctggtctcaaactcctgggctcaagtatcctcccaccttggcctcccaaagttctgggattacaggtgtgagccaccatacccaacaactgtggcttctttcatagcagcccaaaactagaaacaacccaaatgcccatcaatgcatgaatggataaactgtggtatatttatacagtgaaatactattagcaataaaaaggagcaaattacta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74561147 330 + 122973662 tcaagtgatc--ctcccacctcagccccccaagtagctgagcctacaggatgcaccaccatgcccggccaatattttctatttttttgtagagacagggttatatcatgtttcccagactggtctcaaactcctgggctcaagtgtcctcccaccttggcctcccaaagttctgggattacaggtgtgagccaccacacccaacaattgtggcttctttcatagcagcccaaaactagaaacaacccaaatgcccatcaatgcatgaatggataaagtgtggtatatttatacagtgaaataataatagcaataaaaaggagcaaattacta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30028237 326 + 172585720 tcaagtgatc--ctcccagctcagccccacaagtagctgagactacaggatgcaccaccatgcccggtcaatattttgtatttttttgtagagacagggttttatcatgtttcccaggctggtctcaaactcctgggctcaagtgtcctcccaccttggcctcccaaagttctgggattacaggtgtgagccaccacacccaacaattgtggcttctttcatagcagcccaaaactagacacaatccaaatgcccatca----atgaatggataaactgtggtatatttacacagtgaaatattattagcaataaaaaagagcaaattacta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29690686 325 - 170955103 tcaagtgatc--ctcccatctcagccccacaagtagctgagactacaggatgcaccaccatgcccggtcaatattctgtatttttttgtagagacagggttttatcatgtttcccaggctggtctcgaactcctgggctcaagtgtcctcccaccttggcctcccaaagttctgggattacaggtgtgagccaccaca-ccaacaattgtggcttctttcatagcagccccaaactagaaacaacccaaatgcccatca----atgaatggataaactgtggtatatttacacagtgaaatattattagcaataaaaaagagcaaattacta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2736828 325 -   2996164 tcaagtgatc--ctcccatctcagccccacaagtagctgagactacaggatgcaccaccatgcccggtcaatattctgtatttttttgtagagacagggttttatcatgtttcccaggctggtctcgaactcctgggctcaagtgtcctcccaccttggcctcccaaagttctgggattacaggtgtgagccaccaca-ccaacaattgtggcttctttcatagcagccccaaactagaaacaacccaaatgcccatca----atgaatggataaactgtggtatatttacacagtgaaatattattagcaataaaaaagagcaaattacta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     488559 328 +    766320 tcaagtgatccactcccagctcagccccacaagtagctgagactacaggatgcaccaccatgcccggtcaatattttgtatttttttgtagagacagggttttatcatgtttcccaggctggtctcaaactcctgggctcaagtgtcctcccactttggcctcccaaagttctgggattacaggtgtgagccaccacacccAACAATTGTGgcttctttcatagcagcccaaaactagacacaacccaaatgcccatca----atgaatggataaactgtggtatatttacacagtgaaatattattagcaataaaaaagagcaaattacta
i cerAty1.NW_012002711v1   I 1377 C 0
s chlSab2.chr17            28945480 326 -  71996105 tcaagtgatc--ctcccatctcagccccacaagtagctgagactacaggatgcaccaccatgcccggtcaatattttgtatttttttgtagagacagggttttatcatgtttcccaggctggtctcgaactcctgggctcaagtgtcctcccaccttggcctcccaaagttctgggattacaggtgtgagccaccacacccAACAattgtggtttctttcatagcagcccaaaactagaaacaacccaaatgcccatca----atgaatggataaactgtggtatatttacacagtgaaatattattagcaataaaaaagagcaaattacta
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2576335 325 -   3067355 tcaagtgatc--ctcccagctcagccccacaagtagctgagactacaggatgcaccaccatgcctggtcaatattttgtatttttttgtagagacaaggttttatcttgtttcccaggctggtct-aaacttctgaactcaagtgttctcccaccttggcctcctaaagttctgggattacaggtgtgagccaccacacccAACAATTGTGgcttctttcatagcagcccaaaactagaaacaacccaaatgcccatca----atgaatggataaactgtggtatatttacacagtgaaatattattagcaataaaaaagagcaaattacta
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518579 45539 +    730504 I
e saiBol1.JH378357           170526 82273 -    242197 T
e otoGar3.GL873550            56900 4956 +  18854210 I
e manLeu1.NW_012099233v1     121070 1045 +    290775 M

a score=369889.000000
s hg38.chr6_GL000254v2_alt   834260 66 +   4827813 atatatgaaacactatgaatgaatttccataacaagccggataacagaagccagaaataaGGCATG
s panTro5.chr6             29796991 66 + 175400573 atatatgaaacactatgaatgaatttccataacaagccggataacagaagccagaaataaGGCATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30031632 66 + 173848474 atatatgaaacactatgaatgaatttccataacaagccggataacagaagccagaaataaGGCATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5835011 66 +   6154872 atatatgaaacactatgaatgaatttccataacaagccggataacagaagccagaaataagggaTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74561477 66 + 122973662 atatatgaaacactatgaatgaattttcataacaagctggataacagaagccagaaataaGGCATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30028563 66 + 172585720 atatatgaaacactatgaataagtttccataacaagttggataacagaagccaaaaataaaGCATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29691011 65 - 170955103 atatatgaaacactat-aatgagtttccataacaagttggataacagaagccagaaataaaGCATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2737153 65 -   2996164 atatatgaaacactat-aatgagtttccataacaagttggataacagaagccagaaataaaGCATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     488887 66 +    766320 atatatgaaacactatgaataagtttccataacaagttggataacagaagccagaaataaaGCATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28945806 66 -  71996105 atatatgaaacactatgaatgagtttccataacaagttggataacagaagccagaaataaagcatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     122115 66 +    290775 ATATATGAAACACTATGAATAAGTTTCCATAACAAGTTGGATAACAGAAGCCAGAAATAAAGCATG
i manLeu1.NW_012099233v1   M 1045 C 0
s colAng1.NW_012115566v1    2576660 66 -   3067355 atatatgaaacactatgaatgagtttccataacaagttggataacacaagccagaaataaaGCATG
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518579 45539 +    730504 I
e saiBol1.JH378357           170526 82273 -    242197 T
e otoGar3.GL873550            56900 4956 +  18854210 I

a score=1990021.000000
s hg38.chr6_GL000254v2_alt   834326 329 +   4827813 AA-gccaggcatggtggctcatgcctgtaattctagcattttgggagtccaaggtgggtgaatcacttgagcccaagaattcgagaccagtctgggcaacacagcgagaccctgtctctacaaaaagtac-aaaacttagccgcgtgtggtggcctgcacctgtaatcccagctacttggggggt-----------------tgagtccaggaggttgaggctgcagtgaactgtgatcacaccactgcactctagcctgggtgacaaagtaacaccttgtct-c-aaaaaacataaaaaaaGTAAAtttcattgaagtacaaattacgggtaataaaatgcac--------acattt
s panTro5.chr6             29797057 329 + 175400573 AA-gccaggcatggtggctcatgcctgtaattctagcattttgggagtccaaggtgggtgaatcacttgagcccaagaattcgagaccagtctgggcaacacagcgagaccctgtctctacaaaaagtac-aaaacttagccgtgtgtggtggcctgcacctgtaatcccagctacttggggggt-----------------tgagcccaggagcttgaggctgcagtgaactgtgatcataccactgcactctagcctgggtgacaaagtaacaccttgtct-c-aaaaaacataaaaaaaGTAAAtttcattgaagtacaaattacaggtaataaaatgcac--------acattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30031698 330 + 173848474 AA-gccaggcatggtggctcatgcctgtaattctagcattttgggagtccaaggtgggtgaatcacttgagcccaagaattcgagaccagtctgggcaacacagcgagaccctgtctctacaaaaagtac-aaaacttagccgtgtgtggtggcctgcacctgtaatcccagctacttggggggt-----------------tgagcccaggagcttgaggctgcagtgaactgtgatcataccactgcactctagcctgggtgacaaagtaacaccttgtctac-aaaaaacataaaaaaaGTAAAtttcattgaagtacaaattacaggtaataaaatgcac--------acattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5835077 329 +   6154872 AA-gccaggcatggtggctcatgcctgtaattctagcattttgggagtccaaggtgggtgaatcacttgagcccaagaattcgagaccagtctgggcaacacagcgagaccctgtctctacaaaaagtac-aaaacttagctgcgtgtggtggcctgcacctgtaatcccagctacttggggggt-----------------tgagcccaggaggttgaggctgcagtgaactgtgatcataccactgcactctagcctgggtgacaaagtaacaccttgtct-c-aaaaaacataaaaaaaGTAAAtttcattgaagtacaaattacaggtaataaaatgcac--------acattt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74561543 329 + 122973662 AA-gccaggcatggtggctcatacctgtaattctagcattttgggagtccaaggtgggtgaatcacttgagcccaagagttcgagaccagtctgggcaacacagtgagaccctgtctctacaaaaagtac-aaaacttagccgtgtgtggtggcctgcacctgtagtcccagctgcttggggggt-----------------tgagcccaggagcttgaggctgcagtgaactgtgatcataccactgcactctagcctgggtgacagagtaacaccttgtct-c-aaaaaacataaaaaaaGTAAACTTCAttgaagtacaaattacaggtaataaaatgcac--------acattt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30028629 346 + 172585720 AAggccaggcacaatggctcatgcctgtaattctagaactttgggagtctgaggtgggtgaatcacttgagcccaagagttcaagaccagtccaggcaacatagcaagaccctgtctctacaaaaagtacaaaaacttagccatgtgttgtggcctgcacctgtagtcccagctacacgggggttgagttgggaagataa--tgagcccaggaggttgaggctgcagtgaactgtgatcatgccactgcactctagcctgggtgacagagtaagaccttgtct-c-aaaaaacataaaaaaTGTAAACTTCAttgaagtaaaaattacaggtaataaaatgcac--------acattt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29691076 346 - 170955103 AAggccaggcacagtggctcatgcctgtaattctagcactttgggagtccgaggtgggtgaatcacttgagcccaagagttcaagaccagtccaggcaacatagtaagaccctgtctctacaaaaagtacaaaaacttagccatgtgttgtggcctgcacctgtagtcccagctacatgggggttgagttgggaagataa--tgagcccaggaggttgagcctgcagtgaactgtgatcatgccactgcactctagcctgggtgacagagtaagaccttgtct-c-aaaaaacataaaaaaTGTAAACTTCAttgaagtaaaaattacaggtaataaaatgcac--------acattt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2737218 346 -   2996164 AAggccaggcacagtggctcatgcctgtaattctagcactttgggagtccgaggtgggtgaatcacttgagcccaagagttcaagaccagtccaggcaacatagtaagaccctgtctctacaaaaagtacaaaaacttagccatgtgttgtggcctgcacctgtagtcccagctacatgggggttgagttgggaagataa--tgagcccaggaggttgagcctgcagtgaactgtgatcatgccactgcactctagcctgggtgacagagtaagaccttgtct-c-aaaaaacataaaaaaTGTAAACTTCAttgaagtaaaaattacaggtaataaaatgcac--------acattt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     488953 346 +    766320 AAggccaggcacaatggctcatgcctgtaattctagaactttgggagtctgaggtgggtgaatcacttgagcccaagagttcatgaccagtccaggcaacatagcaagaccctgtctctacaaaaagtacaaaaacttagccatgtgttgtggcctgcacctgtagtcccagctacacgggggttgagttgggaagataa--tgagcccaggaggttgaggctgcagtgagctgtgatcatgccaatgcactctagcctgggtgacagagtaagaccttgtct-c-aaaaaacataaaaaaaGTAAACTTCGttgaagtaaaaattacaggtaataaaatgcac--------acattt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28945872 347 -  71996105 aaggccaggcacagtggctcatgcctgtaattctagcactttgggagcccgaggtgggtgaatcacttgagcccaagagttcaagaccagtccaggcaacatagcaagaccctgtctctacaaaaagtacaaaaacttagccatgtgttgtggcctgcacctgtagtcccagctacatgggggttgagttgggaagataa--tgagcccaggaggttgaggctgcagtgaactgtgatcatgccactgcactctagcctgggtgacagagtaagaccttgtct-caaaaaaacataaaaaatgtaaacttcattgaagtaaaaattaaaggtaataaaatgcac--------acattt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     122181 346 +    290775 AAggccaggcacaatggctcatgcctgtaattctagaactttgggagtctgaggtgggtgaatcacttgagcccaagagttcatgaccagtccaggcaacatagcaagaccctgtctctacaaaaagtacaaaaacttagccatgtgttgtggcctgcacctgtagtcccagctacacgggggttgagttgggaagataa--tgagcccaggaggttgaggctgcagtgaactgtgatcatgccactgcactctagcctgggtgacagagtaagaccttgtct-c-aaaaaacataaaaaaaGTAAACTTCGttgaagtaaaaattacaggtaataaaatgcac--------acattt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2576726 346 -   3067355 AAggccaggcacagtggctcatgcctgtaattctagcactttgggagtccgaggtgggtgaatcacttgagcccaagagttcaagaccagtccaggcaacatagcaagaccctgtctctacaaaaagtacaaaaacttagccatgtgttgtggcctgcacctgtagtcccagctacatgggggttgagttgggaagataa--tgagcccaggaggttgaggctgcagtgaactgtgatcatgccactgcactctagcctgggtgacagagtgagaccttgtct-c-aaaatacataaaaaaaGTAAACTTCAttgaagtaaaaattaccggtaataaaatgcac--------acattt
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550            61856 334 +  18854210 -aggccacgcacagcggttcatgcctatattcctagcaccctgagaggctgaggtcaggggtttgctggacctcatgagttcaagatcagcctgagca--agagcaagaccccacctctactaaaagtag-aaaaattagccaggcatggtggtgcatgcttgtaattccagctactaggagactgaggcaagaggatcacgtgagcccaggaatttgtagttcctctgcgccatgat---gtcatggcactccagactgaacaacagagtgagactctgtct-c-aaaaa----caaaaatcaagatttca---aagtatctatta--------agaatgtgctaccaaaaacattt
i otoGar3.GL873550         I 4956 I 319
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518579 45539 +    730504 I
e saiBol1.JH378357           170526 82273 -    242197 T

a score=1968961.000000
s hg38.chr6_GL000254v2_alt   834655 367 +   4827813 taagtatattgttcaataagttttgacaagtgcatacacttggataaccaataccccattcaagatatagagcatgcattttcattattctagaaagttatcctatgccctgtcccagacaaccaatcatctgatttctatcttgctagatttgcttttcctgttgtaggaaagttatgtcaatgaaatcaggtggtatgAATGTATGAATGCTTGCTTGC----TTG--------C------------tttttttttttttttttttttttgagacagggtctcactctgtcacccaggctggagtgcagtagtgcagtggtgcaatcacggctccctacagccttgacctccTAAGTATattgaacaatatacttaaaatgtgtgcatt
s panTro5.chr6             29797386 371 + 175400573 taagtatattgttcaataagttttgacaagtgtatacacttggataaccaataccccattcaagatatagagcatgcattttcattattctagaaagttatcctatgccctgtcccagacaaccaatcatctgatttctatcttgctagatttgcttttcctgttgtaggaaagttatgtcaatgaaatcaggtggtatgAATGTATGAATGCTTGCTTGCttttttt--------t------------tttttttttttttttttttttttgagacagggtctcactctgtcacccaggctggagtgcagtagtgcagtggtgcaatcacggctccctacagccttgacctccTAAGTATattgaacaatatacttaaaatgtgtgcatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30032028 362 + 173848474 taagtatattgttcagtaagttttgacaagtgtatacacttggataaccaataccccattcaagatatagagcatgcattttcattattctagaaagttatcctatgccctgtcccagacaaccaatcatctgatttctatcttgctagatttgcttttcctgttgtaggaaagttatgtcaatgaaatcaggtggtatgAATGTATGAATGCTTGCTTGC-----------------------------tttttttttttttttttttttgtagacagggtctcactctgtcacccaggctggagtgcagtagtgcagtggtgcaatcacggctccctacagccttgacctccTAAGTATattgaacaatatacttaaaatgtgtgcatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5835406 366 +   6154872 tacgtatattgttcaataagttttgataagtgtatacacttggataaccaataccccattcaagatatagagcatgcattttcattattctagaaagttatcctatgccctgtcccagacaaccaatcatctgatttctatcttgctagatttgcttttcctgttgtaggaaagttatgtcaatgaaatcaggtggtatgAATGTATGAATGCTTGCTTGC----TTG--------C-------------ttttttttttttttttttttttgagacagggtctcactctgtcacccaggctggagtgcagtagtgcagtggtgcaatcacggctccctacagccttgacctccTAAGTATattgaacaatatacttaaaatgtgtgcatt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74561872 379 + 122973662 taagtatattgttcaataagttttgacaagtgtatatacctggataaccattactgcattcaagatatagagcatgcattttcattattctagaaagttatcctatgctctgtgccagacaaccAATAATCTGATTCCTATCTTGCTAGATTTGTTTTTCCTGTTGTAGGAAAGTTATGTCAATGAAATCAGCTGGTATGAATGTATGAAtgcttgcttgc----ttg--------cttgcttCCttcctttttttttttttttttttttttgaaacagggtctcactctgtcacccaggctggagtgcagtagtgcagtggtgcaatcgcggctccctacagccttgacctccTAAGTATattgaacaatatacttaaaatgtgtgcatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30028975 363 + 172585720 taagtatatcgttcaacaagttttgacaagtgcatacacctggataaccaataccccattcaatatatagagcatgcatttttattattctagaaagttctcctatgccctgtcccagacaaccagttgtctgatttttgtcttgctagatttgtttttcctgttgtaggaaagttatgtcaatgaaatcaGCTGGCATGAACGTATGAATGCTttgtttgtttgttt--------c--------------------tttttttttttttttgagacagggtctcactctgtcacccaggctggagtgcagtagtgcagtggtgcaatcacggctccctacagtcttgacctccTAAGTATattgaacaatatacttaaaatatgtgcatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29691422 366 - 170955103 taagtatatcgttcaacaagttttgacaagtgcatacacctggataaccaataccccattcaatatatagagcatgcatttttattattctagaaagttctcctatgccctgtcccagacaaccagttgtctgatttttgtcttgctagatttgtttttcctgttgtaggaaagttatgtcaatgaaatcaGCTGGCATGAACGTATGAATGCTTTGtttgtttgttt--------c-----------------ttttttttttttttttttgagacagggtctcactctgtcacccaggctggagtgcagtagtgcagtggtgcaatcacggctccctacagtcttggcctccTAAGTATACTgaacaatatacttaaaatatgtgcatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2737564 371 -   2996164 taagtatatcgttcaacaagttttgacaagtgcatacacctggataaccaataccccattcaatatatagagcatgcatttttattattctagaaagttctcctatgccctgtcccagacaaccagttgtctgatttttgtcttgctagatttgtttttcctgttgtaggaaagttatgtcaatgaaatcaGCTGGCATGAACGTATGAATGCTTTGTTTGTttcttt--------c------------tttctttttttttttttttttttgagacagggtctcactctgtcacctaggctggagtgcagtagtgcagtggtgcaatcacggctccctacagtcttggcctccTAAGTATACTgaacaatatacttaaaatatgtgcatt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     489299 335 +    766320 taagtatattgttcaacaagttttgacaagtgcatacacctggataacca----------------atagagcatgcatttttattattctagaaagttctcctatgccctgtcccagacaaccAGTTATCTGATTTTTATCTTGCTACATTTGTTTTTCCTGTTGTAGGAAAGTTATGTCGATGAAATCAGCTGGCATGAATGTATGAATAC------------ttt--------c--------------------tttctttctttttttgagacagggtctcactctgtcacccaggctggagtgcagtagtgcagtggtgcaatcacggctccctacagtcttgacctccTAAGTATattgaacaatatacttaaaatatgtgcatt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28946219 378 -  71996105 taagtatatcgttcaacaagttttgacaagtgcgtacacctggataaccaataccccattcaatatatagagaatgcatttttattattctagaaagttctcctatgccctgtcccagacaaccagttgtctgatttttatcttgctagatttgtttttcctgttgtaggaaagttatgtcaatgaaatcaGCTGGCATGAACGTATGAATGCTTTGTTTCTTTCTTTtttttttgt-------------ttttttgtttttttgtttttttgagacagggtctcactctgtcacccaggctggagtgcagtagtgcagtggtgtaatcacggctccctacagtcttggcctccTAAGTATACTgaacaatatacttaaaatatgtgcatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     122527 370 +    290775 taagtatatcgttcaacaagttttgacaagtgcatacacctggataaccaataccccattcaatatatagagcatgcatttttattattctagaaagttctcctatgccctgtcccagacaaccagttatctgatttttatcttgctacatttgtttttcctgttgtaggaaagttatgtcgatgaaatcaGCTGGCATGAACGTATGAATACTTTCTTTCtttcttt--------c-------------tttcttttttttttttttttttgagacagggtctcactctgtcacccaggctggagtgcagtagtgcagtggtgcaatcacggctccctacagtcttgacctccTAAGTATattgaacaatatacttaaaatatgtgcatt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2577072 368 -   3067355 taagtatatcgttcaacaagttttaacaagtgcatacacctggataaccaataccccattcaatatatagagcatgcatttttattattctagaaagttctcctatgccctgtcccagacaaccagttatctgatttttatcttgctagatttgttttttctgttgtaggaaagttgtatcaatgaaatcaGCTGGCATGAACGTATGAATGCTTTGTTtctttcttt--------c---------------tttctttctttttttttttggagacagggtctcaccctgtcacccaggctggagtgcagtagtacagtggtgcaatcatggctccctacagtcttgacctcccAAGTATattgaacaatatacttaaaatatgtgcatt
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518579 45539 +    730504 I
e saiBol1.JH378357           170526 82273 -    242197 T
e otoGar3.GL873550            62190 319 +  18854210 I

a score=1923601.000000
s hg38.chr6_GL000254v2_alt   835022 337 +   4827813 ttattacatgtaaattctatcttaaagaagtttat---tttattttatg-tttttttgagacaaggtctgactctgtcacccaggctagagtgcagtggcatgatcacagctcactgc-agcctcaatctcctaggcgcaggttatcttcccagctcagccccccaaggagctgggactacagatgaaggccaccacacccggctaagtttttgtacttttcgtagagacaaggtcttgctatgtt-gcccagactggtctcgaactcctgggctcaggtgatccattcctcttggcctcttaaagtgctgggattacag--atgtgagccaccatgcccagact
s panTro5.chr6             29797757 337 + 175400573 ttattacatgtaaattctaccttaaagaagtttat---tttattttatg-tttttttgagacaagttctgactctgtcacccaggctagagtgcagtggcatgatcacagctcactgc-agcctcaatctcctaggcgcaggttatcttcccagctcagccccccaaggagctgggactacagatgaaggccaccacacccggctaagcttttgtacttttcgtagagacaaggtcttgctatgtt-gcccagactggtctcgaactcctgggctcaggtgatccattcctcttggcctctcaaagtgctgggattacag--atgtgagccaccatgcccagact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30032390 338 + 173848474 ttattacatgtaaattctaccttaaagaagtttat---tttattttatgttttttttgagacaagttctgactctgtcacccaggctagagtgcagtggcatgatcacagctcactgc-agcctcaatctcctaggcgcaggttatcttcccagctcagccccccaaggagctgggactacagatgaaggccaccacacccggctaagcttttgtacttttcgtagagacaaggtcttgctatgtt-gcccagactggtctcgaactcctgggctcaggtgatccattcctcttggcctctcaaagtgctgggattacag--atgtgagccaccatgcccagact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5835772 337 +   6154872 ttattacatgtaaattctaccttaaagaagtttat---tttattttatg-tttttttgagacaaggtctgactctgtcacccaggctagagtgcagtggcatgatcacagctcactgc-agcctcaatctcctaggcgcaggttatcttcccagctcagccccccaaggagctgggactacagatgaaggccaccacacccggctaagcttttgtacttttcgtagagacaaggtcttgctatgtt-gcccagactggtctcgaactcctgggctcaggtgatccattcctcttggcctctcaaagtgctgggattacag--atgtgagccaccatgcccagact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74562251 337 + 122973662 ttattacatgtaaattgtactttaaagaagtttat---tttattttatg-tttttttgagacaaggtctgactctgtcacccaggctagagtgcagtggcatgatcacagctcactgc-agcctcaacctcctaggctcaggttatcttcccagctcagccccccgaggagctggtactacaggtgcaggccaccacacctggctaagtttttgtactttttatagagacaaggtctcactgtgtt-gcccagactggtctcgaactcctgggctcaagtgatccattcctcttggcctttcaaagtgctgggattacag--atgtgagccaccatgcccagact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30029338 332 + 172585720 ttattacatgtaaattgtacgttaaagaag--------tttattttatg-tttttttgaaacaaggtctcactctgtcacccaggctagagtgcattggcatgatcacagctcactgc-agcctcaacctcctgggcttagattattttcccaactcagctccccaaggagctgggactacaggtacaggccaccacacacagctacgtttttgtacactttgtagagacagggtctcgctatgtt-gctcagactggtctcaaactcctggcctcaagtgatccactcctcttggcctctcaaagtgctgggattacag--atgtgagccaccatgcccagact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29691788 332 - 170955103 ttattacatgtgaattgtaccttaaagaag--------tttattttatg-tttttttgaaacaaggtctcactctgtcacccaggctagagtgcagtggcatgatcacagctcactgc-agcctcaacctcctgggcttagattattttcccaactcagctccccaaggagctgggactacaggtacaggccaccacacacagctacgtttttgtacactttgtagagacagggtctcgctatgtt-gctcagactggtctcaaactcctggcctcaagtgatccactcctcttggcctctcaaagtgctgggattacag--atgtgagccaccatgcccagact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2737935 333 -   2996164 ttattacatgtgaattgtaccttaaagaag--------tttattttatgttttttttgaaacaaggtctcactctgtcacccaggctagagtgcagtggcatgatcacagctcactgc-agcctcaacctcctgggcttagattattttcccaactcagctccccaaggagctgggactacaggtacaggccaccacacacagctacgtttttgtacactttgtagaggcagggtctcgctatgtt-gctcaggctggtctcaaactcctggcctcaagtgatccactcctcttggcctctcaaagtgctgggattacag--atgtgagccaccatgcccagact
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     489634 332 +    766320 ttattacatgtaaattgtacgttaaagaag--------tttattttatg-tttttttgaaacaaggtctcactctgtcacccaggctagagtgcattggcatgatcacagctcactgc-agcctcaacctcctgggcttagattattttcccaactcagctccccaaggagctgggactataggtacaggccaccacacacagctacgtttttgtacattttgtagagacacggtctcgctatgtc-gctcaggctggtctcaaactcctggcctcaagtgatccactcctcttggcctctcaaagtgctgggattacag--atgtgagccaccatgcccagact
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28946597 332 -  71996105 ttattacatgtaaattgtaccttaaagaag--------tttattttatg-tttgtttgaaacaaggtctcactctgtcacccaggctagagtgcagtggcatgatcacagctcactgc-agcctcaacctcctgggcttagattattttcccaactcagctccccaaggagctgggactacaggtacaggccaccacacacagctacgtttttgtacattttgtagagacagggtctcgctatgtt-gctcagactggtctcaaactcctggcctcaagtgatccactcctcttggcctctcaaagtgctgggattacag--atgtgagccaccgtgcccagact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     122897 332 +    290775 ttattacatgtaaattgtacgttaaagaag--------tttattttatg-tttttttgaaacaaggtctcactctgtcacccaggctagagtgcattggcatgatcacagctcactgc-agcctcaacctcctgggcttagattattttcccaactcagctccccaaggagctgggactataggtacaggccaccacacacagctacgtttttgtacattttgtagagacacggtctcgctatgtc-gctcaggctggtctcaaactcctggcctcaagtgatccactcctcttggcctctcaaagtgctgggattacag--atgtgagccaccatgcccagact
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2577440 333 -   3067355 ttattacatgtaaattgtaacttaaagaag--------tttattttatg-tctttttgaaacaaggtctcactctgtcacccaggctagagtgcagtggcatgatcacagttcactgcaagcctcaacctcctgggcttagattattttcccaactcagctccccaaggagctgggactacaggtacaggccaccacacacagctacgtttttgtacattttgtagagacagggtctcgctatgtt-gctcagactggtctcaaactcctggcctcaagtgatccactcctcttggcctctcaaagtgctgggatgacag--atgtgagctaccatgcccagact
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550            62509 296 +  18854210 TTGTTACATGGTtttttttgttt------gtttgtttctttgtttgttt-TGttgttgagacagagtctcaaactgtcaccctgggtaga-------------atcacagctcacaac-aacgtcaaactcccaggcttaagcgaacctcttgcctcagcctcccaagtagctgggactacaggcacccaccacaaagcccggctactttttcttgcagttgtcattg--------ttggtttgctggccctggctgggttggaacccaccaccttcagtg--------tatgtggct------ggtgctgtaaccactgtaatatggg------tgccaagccT
i otoGar3.GL873550         I 319 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518579 45539 +    730504 I
e saiBol1.JH378357           170526 82273 -    242197 T

a score=931804.000000
s hg38.chr6_GL000254v2_alt   835359 154 +   4827813 gaagttgattttaaaagcagaaatgagctactgatacttgaaacaacatgaataaattgcaaaataattactcctagtgaaataattcttactcaaaggagtata-----tattattccatttgtatgaagtcctagaagaggcaaaact--------------------------------------------aagtatcaa
s panTro5.chr6             29798094 154 + 175400573 gaagttgattttaaaagcagaaatgagctactgatacttgaaacaacatgaataaattgcaaaataattactcctagtgaaataattcttactcaaaggagtata-----tattattccatttgtatgaagtcctggaagaggcaaaact--------------------------------------------aagtatcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30032728 154 + 173848474 gaagttgattttaaaagcagaaatgagctactgatacttgaaacaacatgaataaattgcaaaataattactcctagtgaaataattcttactcaaaggagtata-----tattattccatttgtatgaagtcctggaagaggcaaaact--------------------------------------------aagtatcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5836109 154 +   6154872 gaagttgattttaaaagcagaaatgagctactgatacttgaaacaacatgaataaattgcaaaataattactcctagtgaaataattcttactcaaaggagtata-----tattattccatttgtatgaagtcctagaagaggcaaaact--------------------------------------------aagtatcaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74562588 159 + 122973662 gaagttgattttaaaagcagaaatgagctactgatacatgaaacaacattaataaattgcaaaagaattactcctagtgaaagagttcttactcaaaggagtatatattgtattattccatttgtatgaagtcctagaagaggcaaaact--------------------------------------------aaGTAACAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30029670 203 + 172585720 caagttgattttaaaagcagaaatgagctactgatacatgaaacaacgttaataaattgcagaagaattactcctagtgaaagaattctgactcaaaggagtacatattgtattattccatttgtatgaagtcctagaagagccaaaactggtgatagcaatcttaatagcagttggccttgggcaaaaatggcaggtatcaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29692120 203 - 170955103 caagttgattttaaaagcagaaatgagctactgatacatgaaacaacgttaataaattgcagaagaattactcctagtgaaagaattctgactcaaaggagtacatattgtattattccatttgtatgaagtcctagaagagccaaaactggtgatagcaatcttaatagcagttggccttgggcaaaaatggcaggtatcaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2738268 203 -   2996164 caagttgattttaaaagcagaaatgagctactgatacatgaaacaacgttaataaattgcagaagaattactcctagtgaaagaattctgactcaaaggagtacatattgtattattccatttgtatgaagtcctagaagagccaaaactggtgatagcaatcttaatagcagttggccttgggcaaaaatggcaggtatcaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     489966 203 +    766320 caagttgattttaaaagcagaaatgagctactgatacatgaaacaacattaataaattgcaaaagaattactcctagtgaaagaattctgactcaaaggagtacatattgtattattccatttgtatgaagtcctagaagagccaaaactggtgatagcaatcttaataacagttggccttgggcaaaaatggcaggtatcaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28946929 203 -  71996105 caagttgattttaaaagcagaaatgagctactgatacatgaaacaacgttaataaattgcagaagaattacccctagtgaaagaattctgactcaaaggagtacatattgtattattccatttgtatgaagtcctagaagagccaaaactggtgatagcaatcttaataacagttggccttgggcaaaaatggcaggtatcaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     123229 203 +    290775 caagttgattttaaaagcagaaatgagctactgatacatgaaacaacattaataaattgcaaaagaattactcctagtgaaagaattctgactcaaaggagtacatattgtattattccatttgtatgaagtcctagaagagccaaaactggtgatagcaatcttaataacagttggccttgggcaaaaatggcaggtatcaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2577773 203 -   3067355 caagttgattttaaaagcagaaatgagctactgatacatgaaacaacattaataaattgcaaaagaattactcctagtgaaagaattctgactcaaaggagtacatattgtattattccatttgtatgaagtcctagaagagccaaaactggtgatagcaatcttaatagcagttggccttgggcaaaaatggcaggtatcaa
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            88253 166 -    242197 gaaGTTGATTTTAAaaatagaaatgaactatttatacacacaacaatatagatgaatcataaaaaatttattcctcatgaaagaatcttaactcaaaggaatacaaattgtataattttatttgtatgaagtactagaagagacaaaact-------------------------------------gaatgatggtaatcaa
i saiBol1.JH378357         T 82273 I 63
s otoGar3.GL873550            62805  29 +  18854210 ---GTTG-------------------------------------------------TTGCA---------------------------------------------------------TGTTTTTGTGTGCTCTTACA-----------------------------------------------------------------
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518579 45539 +    730504 I

a score=373407.000000
s hg38.chr6_GL000254v2_alt   835513 52 +   4827813 ggaaagaggcaagtggaaggtttgtaggatgatggaaatcttctgtttcttc
s panTro5.chr6             29798248 52 + 175400573 ggaaagaggcaagtggaaggtttgtaggatgatggaaatcttctgtttcttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30032882 52 + 173848474 ggaaagaggcaagtggaaggtttgtaggatgatggaaatcttctgtttcttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5836263 52 +   6154872 ggaaagaggcaagtggaaggtttgtaggatgatggaaatcttctgtttcttc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74562747 52 + 122973662 GGAAAGAGGCAAAGGGAAGGTTTGTAGGACAATGGAAATCTTCTGTTTCTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30029873 52 + 172585720 agaaagaggcaaggggaaggtttgtaggatgatggaaatcttctgtttcttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29692323 52 - 170955103 agaaagaggcaaggggaaggtttgtaggatgatggaaatcttctgtttcttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2738471 52 -   2996164 agaaagaggcaaggggaaggtttgtaggatgatggaaatcttctgtttcttc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     490169 52 +    766320 ggaaagaggcaaggggaaggtttgtaggatgatggaagtcttctgtttcttc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28947132 52 -  71996105 ggaaagaggcaaggggaaggtttgtaggatgatggaaatcttctgtttcttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     123432 52 +    290775 ggaaagaggcaaggggaaggtttgtaggatgatggaaatcttctgtttcttc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2577976 52 -   3067355 ggaaagaggcaaggggaaggtttgtaggatgatggaaatcttctgtttcttc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            88482 51 -    242197 ggaaagaggcaag-ggaaaggttgtagggtcatggaaatactccatattttg
i saiBol1.JH378357         I 63 C 0
s aotNan1.NW_018509740v1     139591 51 -    457564 ggaaagagacaag-ggaaagtttgtagggtcatggaaatactccatattttg
i aotNan1.NW_018509740v1   N 0 C 0
s otoGar3.GL873550            62834 35 +  18854210 --------------GGAATGTCACAAGAACgatg---attgcctgcttgtgt
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518579 45539 +    730504 I

a score=178285.000000
s hg38.chr6_GL000254v2_alt   835565 19 +   4827813 attgaagtcatcaaaattc
s panTro5.chr6             29798300 19 + 175400573 attgaagtcatcaaaattc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30032934 19 + 173848474 attgaagtcatcaaaattc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5836315 19 +   6154872 attgaagtcatcaaaattc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74562799 19 + 122973662 ATTGAAGTCAtcaaaattc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30029925 19 + 172585720 actgaagtcatcaaaattc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29692375 19 - 170955103 attgaagtcatcaaaattc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2738523 19 -   2996164 attgaagtcatcaaaattc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     490221 19 +    766320 attgaagtcatcacaattc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28947184 19 -  71996105 actgaagtcatcaaaattc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     123484 19 +    290775 attgaagtcatcacaattc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2578028 19 -   3067355 attgaagtcatcaaaattc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            88533 19 -    242197 attgaagtcatcaaaattt
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1      52069 19 -   1771730 attgaagtcatcaaaattt
i cebCap1.NW_016107755v1   N 0 C 0
s aotNan1.NW_018509740v1     139642 19 -    457564 attgaagtcatcaaaattt
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            62869 16 +  18854210 ---acatttctcaaaatcc
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57801190 65607 -  94987271 I
e proCoq1.NW_012152574v1     518579 45539 +    730504 I

a score=142202.000000
s hg38.chr6_GL000254v2_alt   835584 20 +   4827813 atcaaaacgtatatttcaaa-
s panTro5.chr6             29798319 20 + 175400573 atcaaagcgtatatttcaaa-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30032953 20 + 173848474 atcaaagcgtatatttcaaa-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5836334 20 +   6154872 atcaaagcgtatatttcaaa-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74562818 20 + 122973662 atcaaagcatatatttcaaa-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30029944 20 + 172585720 atcaaagtgtatatctcaaa-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29692394 20 - 170955103 atcaaagtgtatatctcaaa-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2738542 20 -   2996164 atcaaagtgtatatctcaaa-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     490240 20 +    766320 atcaaagtgtatatttcaaa-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28947203 20 -  71996105 atcaaagtgtatatttcaaa-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     123503 20 +    290775 atcaaagtgtatatttcaaa-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2578047 20 -   3067355 atcaaagtgtatatttcaaa-
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            88552 19 -    242197 ctcaaa-catgtatttcaaa-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1      52088 19 -   1771730 ctcaaa-cgtgtatttcaaa-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     139661 19 -    457564 atcaaa-cgtgtatttcaaa-
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            62885 19 +  18854210 agtgaattgtccattgaaa--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57866797 18 -  94987271 ATAAAAACAT---TTTCAACA
i mm10.chr17               I 65607 C 0
e proCoq1.NW_012152574v1     518579 45539 +    730504 I

a score=748440.000000
s hg38.chr6_GL000254v2_alt   835604 82 +   4827813 tctgtgcattttattgcatgtaaattatatccaaaTGTCTACCAGTAGAGAAGAAACAA---GAAATAACGAAGTCTTACATG-----GG-----
s panTro5.chr6             29798339 82 + 175400573 tctgtgcattttattgcatgtaaattatatccaaaTGTCTACCAGTAGAGAAGAAACAA---GAAATAACGAAGTCTTATATG-----GG-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30032973 82 + 173848474 tctgtgcattttattgcatgtaaattatatccaaaTGTCTACCAGTAGAGAAGAAACAA---GAAATAACGAAGTCTTATATG-----GG-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5836354 82 +   6154872 tctgtgcattttattgcatgtaaattatatccaaaCGTCTACCAGTAGAGAAGAAACAA---GAAATAACGAAGTCTTACATG-----GG-----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74562838 82 + 122973662 tctgtgcattttattgaatgtaaattatatccaaaGGTCAACAAGTAGAGAAGAAACAA---GAAATAATGAAGTCTTACATG-----GG-----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30029964 82 + 172585720 tctgtgcattttattgcatgtaaattataTACAAATTTCAACAAGTAGAGAAGAAACAA---GAAATAACGAAGTCTTAGATG-----GG-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29692414 82 - 170955103 tctgtgcattttattgcatgtaaattataTACAAATTTCAACAAGTAGAGAAGAAACAA---GAAATAACGAAGTCTTAGATG-----GG-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2738562 82 -   2996164 tctgtgcattttattgcatgtaaattataTACAAATTTCAACAAGTAGAGAAGAAACAA---GAAATAACGAAGTCTTAGATG-----GG-----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     490260 82 +    766320 tctgtgcattttattgcgtgtaaattataTACAAATTTCAACAAGTAGAGAAGAAACAA---GAAATAAGGAAGTCTTAGATG-----GG-----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28947223 82 -  71996105 tctgtgcattttattgcatgtaaattataTACAAATTTCAACAAGTAGAGAAGAAACAA---GAAATAACGAAGTCTTAGATG-----GG-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     123523 82 +    290775 tctgtgcattttattgcgtgtaaattatacACAAATTTCAACAAGCAGAGAAGAAACAA---GAAATAACAAAGTCTTAGATG-----GG-----
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2578067 82 -   3067355 tctgtgcattttattacatgtaaattataTACAAATTTCAACAAGTAGAGAAGAAACAA---GAAATAACGAAGTCTTAGATG-----GG-----
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            88571 79 -    242197 tctgtgcactttattgtgtgtaaaatgtaccctaaTTTTAACAAGTAGAGAAGA---AA---GAAATAATGAAGTCTTGAATG-----GG-----
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1      52107 79 -   1771730 tctgtgtactttattgtgtgtaaaatgtaccccaaTTTTAACAAGTAGAGAAGA---AA---GAAATAATGAAGTCTTGAATG-----GG-----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     139680 79 -    457564 tctgtgcactttattgtgtgtaaaatgtactctaattTTAACAAGTAGAGAAAA---AA---GAAATAATGAAATCTTGAATG-----GG-----
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     564118 82 +    730504 tctgtgcatttgattgtacgtaaattatatcccaaTATCAACAAGTAGAGAAGAAATGA---GAAATAATAAAGTATTGAACA-----GG-----
i proCoq1.NW_012152574v1   I 45539 C 0
s otoGar3.GL873550            62904 86 +  18854210 tatatgcatttcat--tatgtaaatgatacctTGATTT--AAAAGGAGAAAGGAAACAAACCAAAGTAAGGTGGTATTGAATGAGCACAG-----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57866815 80 -  94987271 CCTAAGTACTTGATT-TATGTAAACTGCACCTCAATTTAA------AGAGATAAGACAT---TGAATACAGTACTTATGTATT-----AGGAGAC
i mm10.chr17               C 0 T 62599

a score=6317987.000000
s hg38.chr6_GL000254v2_alt   835686 636 +   4827813 TTCAAATGAGAC---TTGAGA----------GAAAAGAATGGGACACACTCAGGAGAGGTGGCAATGAGAAAAC-ATGACCTTGTGCTCCTCAATGACACAGAGGAGCAG-AAGTGACCTTTTTACTT-ACCACAGGGAGCACCAATGCTGGCACGTTTCCTCTGAATCATCTCCTTCTTTCTTAATCATCATTAGCACCAGTGGCTAATTAATTGTCTGTGAACTGTGACGCTCTGGAGTCTTGGGAGAATTAACAAGCCATTTCTCTCCATGGGATGGGAGTCCCGGGATCCCTCCCTCCATCACTTCACCACGTTTTCTTCTCTATCTCCACTACCATT-------------AAAAGAG-----------AGGTTAACTTACTAGGTTGAAGAGGAGAGGTTGT---------------GGGCAAAGAGCAACCTTCAGCCTTACAGGTCCAGAAGAAGGATGGTGGTGGGGTATAGTTTGTGCCT-gact-ctagagccaacccacctgggttcaagtctcagct-ctggctatataattctgagctaatt-atttaac----ctatgttttagtttcttcatctgaaaataaatatagaatatagaaatattatccaggtcatacagag----gttgtga---------agTGCTTTGAAAGGTG-----TGGCAGCAGCATTAGAAGTCAACATTACTACCTGAGCCCTAA
s panTro5.chr6             29798421 640 + 175400573 TTCAAATGAGAC---TTGAGA----------GAAAAGAATGGGACACACTCAGGAGAGGTGGCAGTGAGAAAAC-ATGACCTTGTGCTCCTCAATGACACAGAGGAGCAG-AAGTGACCTTTTTACTT-ACCACAGGGAGCACCAATGCTGGCATGTTTCCTCTGAATCATCTCCTACTTTCTTAATCATCATTAGCACCAGTGGCTAATTAATTGTCTGTGAACTGTGAGGCTCTGGAGTCTTGGGAGAATTAACAAGCCATTTCTCTCCATGGGATGGGAGTCCCGGGATCCCTCCCTCCATCACTTCACCACGTTTTCTTTTCTATCTCCACTACCATT-------------AAAAGAG-----------AGGTTAACTTACTAGGTTGAAGAGGAGAGGTTGT---------------GGGCAAAGAGCAACCTTCAGCCTTACAGGTCCAGAAGAAGGATGGTGGTGGGGTATAGTTTGTGCCT-gact-ctagagccagcccacctgggttcaagtctcagct-ctggctatataattctgagctaatt-atttaacctgtctatgttttagtttcttcatctgaaaataaagatagaatatagaaatattatccaggtcatacagag----gttgtga---------agTGCTTTGAAAGGTG-----TGGCAGCAGCATTAGAAGTCAACATTACTACCTGAGCCCTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30033055 640 + 173848474 TTCAAATGAGAC---TTGAGA----------GAAAAGAATGGGACACACTCAGGAGAGGTGGCAGTGAGAAAAC-ATGACCTTGTGCTCCTCAATGACACAGAGGAGCAG-AAGTGACCTTTTTACTT-ACCACAGGGAGCACCAATGCTGGCATGTTTCCTCTGAATCATCTCCTACTTTCTTAATCATCATTAGCACCAGTGGCTAATTAATTGTCTGTGAACTGTGAGGCTCTGGAGTCTTGGGAGAATTAACAAGCCATTTCTCTCCATGGGATGGGAGTCCCGGGATCCCTCCCTCCATCACTTCACCACGTTTTCTTTTCTATCTCCACTACCATT-------------AAAAGAG-----------AGGTTAACTTACTAGGTTGAAGAGGAGAGGTTGT---------------GGGCAAAGAGCAACCTTCAGCCTTACAGGTCCAGAAGAAGGATGGTGGTGGGGTATAGTTTGTGCCT-gact-ctagagccagcccacctgggttcaagtctcagct-ctggctatataattctgagctaatt-atttaacctgtctatgttttagtttcttcatctgaaaataaagatagaatatagaaatattatccaggtcatacagag----gttgtga---------agTGCTTTGAAAGGTG-----TGGCAGCAGCATTAGAAGTCAACATTACTACCTGAGCCCTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5836436 640 +   6154872 TTCAAATGAGAC---TTGAGA----------GAAAAGAATGGGACACACTCAGGAGAGGTGGCAGTGAGAAAAC-ATGACCTTGTGCTCCTCAATGACACAGAGGAGCAG-AAGTGACCTTTTTACTT-ACCACAGGGAGCACCAATGCTGGCACGTTTCCTCTGAATCATCTCCTTCTTTCTTAATCATCATTAGCACCAGTGGCTAATTAATTGTCTGTGAACTGTGAGGCTCTGGAGTCTTGGGAGAATTAACAAGCCATTTCTCTCCATGGGATGGGAGTCCCGGGATCCCTCCCTCCATCACTTCACCACGTTTTCTTTTCTATCTCCACTACCATT-------------AAAAGAG-----------AGGTTAACTTACTAGGTTGAAGAGGAGAGGTTGT---------------GGGCAAAGAGCAACCTTCAGCCTTACAGGTCCAGAAGAAGGATGGTGGTGGGGTATAGTTTGTGCCT-gact-ctagagccagcccacctgggttcaagtgtcagct-ctggctatataattctgagctaatt-atttaacctgtctatgttttagtttcttcatctgaaaataaagatagaatatagaaatattatccaggtcatacagag----gttgtga---------agTGCTTTGAAAGGTG-----TGGCAGCAGCATTAGAAGTCAACATTACTACCTGAGCCCTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74562920 640 + 122973662 TTCAAATGAGAC---TTGAGA----------GAAAAGAATGGGACACACTCAGGAGAGGTGGCAATGAGAAAAC-ATGACCTTGTGCTCCTCAATGATACAGAGGAGCAC-AAGTGACCTTTTTACTT-ACCACAGGGAGCACCAATGCTGGCACGTTTCCTCTGAATCATCTCCTTCTTTCTTAATCATCATTAGCACCAGAGGCTAATTAATTGTCTGTGGGCTGTGAGGCTCTGGAGTCTTGGGAGAATTAACAAGCTATTTCTCTCCATGGGATGGGAGTCTCGGGATCCCTCCCTCCATCACTTCACCACGTTTCCTTTTCTATCTCCACTACCACT-------------AAAAGAG-----------AGGTTAACTTACTAGGCTAAAGAGGAGAGGTTGT---------------GGGCAAAGAGCAACCTTCAGCCTTACAGGTCCAGAAGAAGGATggtggtggggtatagtttgtgctt-gact-ctagagccagcccacctgggttcaagtctcagct-ctggctatataattctgagctaata-atttaacctgtctatgtttttgtttcttcatctgagaataaagatagaatatagaaataacatctgtgtcatacagag----gttgtga---------agTGCTTTGAAAGATG-----TGGCAGAAGCATTAGAAGTCAACATTACTACCTGAGCCCTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30030046 638 + 172585720 TTCAAATGAGGC---TTGAGA----------GAAAAGAATGGGACACACTCAGGAGAGGTGGCAATGAGAAAAC-ATGACCTTGTGCTCCTCAATGACACAGAGGAGCAGAAAGTGACCCTTTTACTT-ACCACAGGGAGCACCAATACTGGCACGTTTCCTCTGAATCAT---CTCCTTTCTTAATCATCATTAGCACCAGCGGCTAATTAACTGTCTGTGGGCTGTGAGGCTCTGGAGTCTTGAGAGAATTAACAAGCCATTTCTTTCCATGGGATGGGAGTCCTGGGATCCCCCCCTCCATCACTTCACCACGTTTCCTTTTCTATCTCCACTACCACT-------------AAAAGAG-----------AGGTTAAGTTACTGGACTGAAGAGGAGAGGTTGT---------------GGGCATAGACCAACCTCCTGCCTCACGGGTCCAGAAGATGGATGGTGATGGGGTATAGTTTGTGCCT-gact-ctagagccagcccacctgggttcaagtctcagct-ctggctatataattttgagctaatt-atgtaacctgtctatgttttagtttcttcatctgaaaataaagatagaatatagaaataatatctgggtcacacaaag----gttgtga---------agTGCTCTGAAAGGTG-----TGGCAGCAGCACTAGCAGTCAACATTACTACCTAAGCCCTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29692496 638 - 170955103 TTCAAATGAGGC---TTGAGA----------GAAAAGAATGGGACACACTCAGGAGAGGTGGCAATGAGAAAAC-ATGACCTTGTGCTCCTCAATGACACAGAGGAGCAGAAAGTGACCCTTTTACTT-ACCACAGGGAGCACCAATACTGGCACGTTTCCTCTGAATCAT---CTCCTTTCTTAATCATCATTAGCACCAGCGGCTAATTAACTGTCTGTGGGCTGTGAGGCTCTGGAGTCTTGAGAGAATTAACAAGCCATTTCTTTCCATGGGATGGGAGTCCTGGGATCCCCCCCTCCATCACTTCACCACGTTTCCTTTTCTATCTCCACTACCACT-------------AAAAGAG-----------AGGTTAAGTTACTGGACTGAAGAGGAGAGGTTGT---------------GGGCATAGACCAACCTCCTGCCTCACGGGTCCAGAAGATGGATGGTGATGGGGTATAGTTTGTGCCT-gact-ctagagccagcccacctgggttcaagtctcagct-ctggctatataattttgagctaatt-atgtaacctgtctatgttttagtttcttcatctgaaaatacagatagaatatagaaataatatctgggtcatacaaag----gttgtga---------agTGCTCTGAAAGGTG-----TGGCAGCAGCACTAGCAGTCAACATTACTACCTAAGCCCTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2738644 638 -   2996164 TTCAAATGAGGC---TTGAGA----------GAAAAGAATGGGACACACTCAGGAGAGGTGGCAATGAGAAAAC-ATGACCTTGTGCTCCTCAATGACACAGAGGAGCAGAAAGTGACCCTTTTACTT-ACCACAGGGAGCACCAATACTGGCACGTTTCCTCTGAATCAT---CTCCTTTCTTAATCATCATTAGCACCAGCGGCTAATTAACTGTCTGTGGGCTGTGAGGCTCTGGAGTCTTGAGAGAATTAACAAGCCATTTCTTTCCATGGGATGGGAGTCCTGGGATCCCCCCCTCCATCACTTCACCACGTTTCCTTTTCTATCTCCACTACCACT-------------AAAAGAG-----------AGGTTAAGTTACTGGACTGAAGAGGAGAGGTTGT---------------GGGCATAGACCAACCTCCTGCCTCACGGGTCCAGAAGATGGATGGTGATGGGGTATAGTTTGTGCCT-gact-ctagagccagcccacctgggttcaagtctcagct-ctggctatataattttgagctaatt-atgtaacctgtctatgttttagtttcttcatctgaaaataaagatagaatatagaaataatatctgggtcatacaaag----gttgtga---------agTGCTCTGAAACGTG-----TGGCAGCAGCACCAGCAGTCAACATTACTACCTAAGCCCTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     490342 641 +    766320 TTCAAATGAGGC---TTGAGA----------GAAAAGAATGGGACACACTCAGGAGAGGTGGCAATGAGAAAAC-ATGACCTTGTGCTCCTCAATGACACAGAGGAGCAGAAAGTGACCCTTTTACTT-ACCACAGGGAGCACCAATACTGGCACGTTTCCTCTGAATCATCTCCTCCTTTCTTAATCATCATTAGCACCAGCGGCTAATTAACTGTCTGTGGGCTGTGAGGCTCTGGAGTCTTGGGAGAATTAACGAGCCATTTCTCTACATGGGATGGGAGTCCTGGGATCCCTCCCTCCATCACTTCACCACGTTTCTTTTTCTATCTCCACTACCACT-------------AAAAGAG-----------AGGTTAATTTACTGGACTGAAGAGGAGAGGCTGT---------------GGGCAAACAGCAACCTCCTGCCTCATGGGTCCAGAAGATGGATGATGATGGGGTATAGTTTGTGCCT-gact-ctaaagccagcccacctgggttcaagtctcagct-ctggctatataattttgagctaatt-atttaacctgtctatgttttagtttcttcatctgaaaataaaaatagactatagaaataatatctgggtcatacaaag----gttgtga---------agTGCTTTGAAAGGTG-----TGGCAGCAGCACTAGCAGTCAACATTACTACCTAAGCCCTAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28947305 641 -  71996105 TTCAAATGAGGC---TTGAGA----------GAAAAGAATGGGGCACACTCAGGAGAGGTGGCAATGAGAAAAC-ATGACCTTGTGCTCCTCAATGACACAGAGGAGCAGAAAGTGACCCTTTTACTT-ACCACAGGGAGCACCAATACTGGCACGTTTCCTCTGAATCATCTCCTCCTTTCTTAATCATCATTAGCACCAGCAGCTAATTAACTGTCTGTGGGCTGTGAGGCTCTGGAGTCTTGGGAGAATTAACGAGCCATTTCTCTACATGGGATGGGAGTCCTGGGATCCCTCCCTCCATCACTTCACCACGTTTCCTTTTCTATCTCCACTACCACT-------------AAAAGAG-----------AGGTTCATTTACTGGACTGAAGAGGAGAGGTTGT---------------GGGCACAGACCAACCTCCTGCCTCACGGGTCCAGAAGATGGATGGTGATGGGATATAGTTTGTGCCT-gact-ctagagccagcccacctgggttcaagtctcagct-ctggctatataattttgagctaatt-atttaacctgtctatgttttagtttcttcatctgaaaataaagatagactatagaaataatatctgggtcatacaaag----gttgtga---------agTGCTTTGAAAGGTG-----TAGCAGCAGCACTAGCAGTCAACATTACTACCTAAGCCCTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     123605 641 +    290775 TTCAAATGAGGC---TTGAGA----------GAAAAGAATGGGACACACTCAGGAGAGGTGGCAATGAGAAAAC-ATGACCTTGTGCTCCTCAATGACACAGAGGAGCAGAAAGTGACCCTTTTACTT-ACCACAGGGAGCACCAATACTGGCACGTTTCCTCTGAATCATCTCCTCCTTTCTTAATCATCATTAGCACCAGCGGCTAATTAACTGTCTGTGGGCTGTGAGGCTCTGGAGTCTTGGGAGAATTAACGAGCCATTTCTCTACATGGGATGGGAGTCCTGGGATCCCTCCCTCCATCACTTCACCACGTTTCTTTTTCTATCTCCACTACCACT-------------AAAAGAG-----------AGGTTAATTTACTGGACTGAAGAGGAGAGGTTGT---------------GGGCAAACAGCAACCTCCTGCCTCATGGGTCCAGAAGATGGATGATGATGGGGTATAGTTTGTGCCT-gact-ctagagccagcccacctgggttcaagtctcagct-ctggctatataattttgagctaatt-atttaacctgtctatgttttagtttcttcatctgaaaataaaaatagactatagaaataatatctgggtcatacaaag----gttgtga---------agTGCTTTGAAAGGTG-----TGGCAGCAGCACTAGCAGTCAACATTACTACCTAAGCCCTAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2578149 641 -   3067355 TTCAAATGAGGC---TTGAGA----------GAAAAGAATGGGACACACTCAGGAGAGGTGGCAATGAGAAAAC-ATGACCTTGTGCTCCTCAATGACACAGAGGAGCAGAAAGTGACCTTTTTACTT-ACCACAGGGAGCACCAATACTGCCACGTTTCCTCTGAATCATCTCTTCCTTTCTTAATCATCATTAGCACCAGCAGCTAATTAACTGTCTGTGGGCTATGAGGCTCTGGAGTCTTGGGAGAATTAACGAGCCATTTCTCTCCATGGGATGGGAGTCCTGGGATCCCTCCCTCCATCACTTCACCACGTTTCCTTTTCTATCTCCACTACCACT-------------AAAAGAG-----------AGGTTAATTTACTGGACTGAAGAGGAGAGGTTGT---------------GGGCAAAGAGCAACCTCCTGCCTCACAGGTCCATTAGATTGATGGTGATGGAGTATAGTTTATGCCT-gacc-ctagagccagcccacctgggttcaagtctcagct-gtggctatataattttgagctaatt-atttaacctgtctatgttttagtttcttcatctgaaaataaagatagactatagaaataatatctgggtcatacaaag----gttgtga---------agTGCTTTGAAAGGTG-----TGGCAGCAGCACTAGCAGTCAACATTACTACCTAAGCCCTAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            88650 654 -    242197 TTCAAATGAGGC---TTGAGA----------AAAAAGAATGATATACACTCAAGAGAGTTGGCAATGGAAAAACAATACCTTTGTGCTCCCCAGTGACATAGAGGAGCAGTAATTGACCTTTTTACTT-CCCATAGGGAGTACCATTGCTTGAATGTTTCCTCTGAATGTTTTCCCTCATTCTTAACCATCATTAGCATCAGTGGCTAATTAATTGTCTGTGGGCTGTGAAGCTCTGGAGTCGTGGGAGAATTAATGAGCCATTTCCCTCCATGGGATGGGAGTCTTGAGACCCCTCCTACCAACACTTCATCATGTTTTTCTTTCTATCTCTAGTACTCCTAAAAAAAAAAAAAAAAAAAG-----------TAGTTACCCTACTAGGCTGAGGGGGATAGGCTAT---------------GAGCAAAGAGCAACCTCCAGCTTCT-AAGTCCAGGAGAAGGATGGTGGTAAGATATGCTTACTGCCT-gact-ctagagccagaccacctgggtgaaagtatcacct-ctggttatataattctgagtaaatt-atttaatctatctatgtttcagcttcctcatctgaaaacaaaggtagaatatagaaataatattcaagtcatacaggt----attgtaa---------agTACTTTGAAAAGTG-----CGGCAGCAGCATTAGCAGTCAACATTACTACCTAAGCCCCAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1      52186 623 -   1771730 TTCAAATGAGGC---TTAAGA----------GAAAAGAATGAGATACACTCAGGAGGGCTGACAATGAAAAAGCAATGCCTTTGTGCTCCCCAGTGACAGAGAGGAGCAGTAAGTGACCTTTTTACTT-CCTATAGGGAGTGCCATTGCTGGAATATTTCCTCT--------------CTTCTTAACCACCATTAGCATCTGTGGCTAATTAAT----TGTGGGCTGTGAAGCTCTGGAGTCTTGGGAGAATTAATGAGCCATTTCTCTTCATGGGATGGGAGTCCTGGGACCCCTCCTACCATCACTTCATCATGTTTTTCTTTCTATCTCTAGTACCACT-------------AAGAAAG-----------TAGTTACCCTACTAGGCTGAGGAGGAGAGGCTAT---------------GGGCAAAGAGCAACCTCCAGCTTCA-AGGTCCAGGAGAAGGATGGTGGTGGGATATGCTTACTGCCT-gact-ctagagccagactacctgggtgaaagtatgacct-ctggttatataattctgagtaaatt-atttaatctgtctatgtttcagcttcctcatcggaaaacaaaggtagcatacagaaataatattcaagtcatacaggt----attgtaa---------agTACTTTGAAAAGTG-----TGGCAGCAGCATTAGCAGTCAACATTACTACCTAAGCCCTAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     139759 634 -    457564 TTCAAATGAGGC---TTGAGA----------GAAAAGAATGAGATACACTCAGGAGAGCTGGCAATGAGAAAACAATGCCTTTGTGCTCCCCAGTGACACAGAGGAGCAGTAAGTGACCTCTTTACTT-ACCATAGGGAGTACCATTGCTGGTATGTTTCCTCTGAATATTTTCCTTCCTTCTTAATCATCATTAGCATCAGTGGCTAATTGTC----TGTCGGCTGTGAAACTCTGGAGTCTTGGGAGAATTAATGAGCCATTTCACTCCATGGGATGGGAGTCCTGGGATCCCTCCCTCCATCACTTCATCATGTTTTTCTTTCTATCTCTAGTACCACT-------------AAAAGAG-----------TGGTTAACCTACTAGGCTTGGGAGGAAAGGCTAT---------------AGGCAAAGAGCAAACTCCAGCTTCA-ACGTTCaggagaaggatggtggtgggatatgcttactgcct-ga---ctagatccaacccacctgggtgaaagtatcagct-ctggttttataattctgagtaaatt-atttaatctgtctgtgtttcagcttcctcatctgaaaacaaaggtagaatatagaaataatattcaagtcatacaggt----attgtaa---------agTACTTTGAAAAGTG-----TGGCAGCAGCATTA-CAGTCAACATTACTATCTAAGCCCTAA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     564200 629 +    730504 TTCAAATGAGGC---TTGAGA----------GAAAGG-ATGAGACACTC-------AGGAGGCCATGAGAAAACAATGCCCTG-TACGCCCCAGTGACACAGAGGGGCAGGGGGTGACCTTTTTACCT-ACCACAGGGAGCGCTGTTTCTGGCACGTTTCCTCTGAATCCTCTCCTCCCTTCTTAACCATCATTAGCTCCAGTGGCTAATTAATTGTCTGTGGGCTGCAGGGCCCCAGAGTCTTGGCAGAATTAATGAGCCATTTGTCTCCATAGGATGGGAGT-CTGGGATCCCCCCTGC-ATCACCTCACCATGCTTCCCTTTCCACCTCCAGTACCGCT-------------AAAAGAG-----------AAGGTAACTCACTGAACTAAGGAGGAAAGGTTGT---------------TGGCAAAGAGCAACCTCTGGCCTCACATGTCCGGCAGAATGagggtggtgggacatggttagtccgt-gact-gtagagccagttcacacaggttcaagtctcagct-ctggctatgcaattctgaggaaact-atttagcctgcctatgttacagtttcttcatctgaaaacaaagatagaatatagtaatagtatccacgtcatacaggt----gttgcaa---------agTGTTTTAAAGTGTG-------GCAGCGGCATTAGCAATCAACATTACTACTTGATCTCTAA
i proCoq1.NW_012152574v1   C 0 I 76
s otoGar3.GL873550            62990 669 +  18854210 TCTAAGACAGGCAATCTAAGATTGGCACTATGAGATG-TTGGGATGAT---------GGGGGTGAGGAGAAAATAGTGCCCTTCCACTCCCCAGTGACACAGAGGAGCA-GAGGTGACTTTCATATTT-ACCACTGGGAGCACCACTGCTGGCACATTTTCTTTAAATCCTCT-CTTCGTTCTTAAC---CATTAGTACCAGTGGCTAATTAGCAGTCAATGGCCTAAGGGGCCCC-TAGTCTTAGCAGAATTAATGAGCTGTTTCTCTCTATGGGATGGGAGTCCTGGGATCTATCCCTC---TATCTCACCA----TTACTCTCCGTCTCCAGTACCACT-------------AGAAGAGGGGTTAAAGAAAGGTTAATTTACTGAATTGACGAAAAGAGGATATTAACAGAGAAGTCCATAACAAAGAGCTACCTCTGG-CTTGTGCATCTGGCAGAG-ACTGATGGTGGAACAtggttggtacacagcct-tttcagctagcccacctgggtttaaagctcgcttactagtgacac-tttctggaacaactgatttatcctctgcatgccttcatttctttatctggaaa-------ggaaggtagtgatagtacccaccccttgaagttgaaaggagcaataaacatgcagtgctttaaaaaatgcccaagaacataagcactAGCAATCCTAACTCTTATCAGAAATCTAA
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               57804296 569 -  94987271 TTCAAATGAGAT-----GAGA----------AAAAAGGATAGGATA-ACTAAG----AGTCACAGGGATAAAGCAACGCCATGGTGCTGCCCACTGACAGAGAGAAATGGATGGTAACCTCTCTATTTAATCCCAGGAGATAAACCTGCTAACAGCTTTCTTCTAAATCCTTCACTTCACTCATAACCGTCATTATCAACAGTGGCTAATTAATTGTCTGTGGGC--AGAGGCCCCAGAGTCCTGGCAGAGCTAATGAGC-ATGTGTCCCTATGGGATGGGAATCTAGGGATCCCTCTGAT-------------GGTGCCCTTTACTATAACCAGGGTCACC-------------AAAAT-G-----------ATGTCAACTTCCTGGACTAA-----------TGC--------------------------------------------------AGAATGTTGGTGGTGGGATACAGTGCATGTAG-AACTACAAgagtcagtctcctttggttcaagtctcagct-cagattatactgtcctgagtaaggt-acttaacccgtctatttattcattactttacctgaaatcaaagagaataTGCAGTAGTCATATC-AGATAATGCCACT----GATGCAG---------AGTGAATTGGGAAATT-----CAGGA-TGGCATTCCCA-TCCAGAGTATG--CTGAGCCCTAA
i mm10.chr17               T 62599 C 0

a score=611810.000000
s hg38.chr6_GL000254v2_alt   836322 76 +   4827813 TCCACCA-CCCTTTCAAAGGTGCCCAACACTCCT---GACTTTGCTTGTAGATTTCAT--TGTGAGGATTAACTAGAGGCTC-
s panTro5.chr6             29799061 76 + 175400573 TCCACTA-CCCTTTCAAAGGTGCCCAACACTCCT---GACTTTGCTTGTAGATTTCAT--TGTGAGGATAAACTAGAGGCTC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30033695 76 + 173848474 TCCACCA-CCCTTTCAAAGGTGCCCAACACTCCT---GACTTTGCTTGTAGATTTCAT--TGTGAGGATTAACTAGAGGCTC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5837076 76 +   6154872 TCCACCA-CGCTTTCAAAGGTGCCCAACACTCCT---GACTTTGCTTGTAGATTTCAT--TGTGAGGATTAACTAGAGGCTC-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74563560 76 + 122973662 TCCACCA-CCCTTTCAAAGATACCCAACACTCCT---GACTTTGCTTGTAGATTTCAT--TGTGAGGATTAAGTAGAGGTTC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30030684 76 + 172585720 TCCACCA-CCTTTTCAAAGGTCCCTGACACTCCT---GACTTTGTTTATAGATTTCAT--TGTGAGGATTAAGTAGAGGCTC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29693134 76 - 170955103 TCCACCA-CCTTTTCAAAGGTCCCTGACACTCCT---GACTTTGTTTATAGATTTCAT--TGTGAGGATTAAGTAGAGGCTC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2739282 76 -   2996164 TCCACCA-CCTTTTCAAAGGTCCCTGACACTCCT---GACTTTGTTTATAGATTTCAT--TGTGAGGATTAAGTAGAGGCTT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     490983 76 +    766320 TCCACCA-CCTTTTCAAAGGTGCCCAACACTCCT---GACTTTGCTTGTAGATTTCAT--TGTGAGGATTAAGTAGAGGCTC-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28947946 76 -  71996105 TCCACCA-CCTTTTCAAAGGTCCCCAACACTCCT---GACTTTGCTTGTAGATTTCAC--TGTGAGGATTAAGTAGAGGCTC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     124246 76 +    290775 TCCACCA-CCTTTTCAAAGGTGCCCAACACTCCT---GACTTTGCTTGTAGATTTCAT--TGTGAGGATTAAGTAGAGGCTC-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2578790 76 -   3067355 TCCACCA-CCTTTTCAAAGATGCCCAACACTCCT---GACTTTGCTTGTAGATTTCAT--TGTGAGGATTAGGTAGAGGCTC-
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            89304 71 -    242197 CCTCTCG-TCCTTTCAAAG-----TAACCCCCCT---TACTTTGGTCATAGTTCTTAT--TGTGAGGATCGAGTAGAGGCTC-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1      52809 71 -   1771730 CCTCTCA-TCCTTTCCAAG-----TAACCCCCCT---TACTTTGGTCATAGTTCTTAT--TGTGAGGATCAAGTGGAGGCTC-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     140393 71 -    457564 CCTCTCA-TCCTTTCAAAG-----TAACCCCCCT---TACTTTGGTCATAGTTCTTAT--TGTGAGGATCGAGTAGAGGCTC-
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            63661 75 +  18854210 TCTATCA---GTTTTAAAGGTG--TAATATTCCTCCATAGTTTGCTTTTAGTTTGCAT--GGTAAGAATCAAATGGAGACTC-
i otoGar3.GL873550         I 2 I 2
s mm10.chr17               57804865 75 -  94987271 --CACCAGTGCTGTCAAAGGGGCACAAGCCATCA------TTTGCTCTCACTTTTCATAGTGTGAAGATCAATTGGAGGCTCC
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     564829 76 +    730504 I

a score=825164.000000
s hg38.chr6_GL000254v2_alt   836398 94 +   4827813 ACTCAGTCTAGAAGCTCGTTGTCAGGGAGAAGCTCCGGCAGC-AGGCAAT-GGGGAGATTGTGACATGATTGAGGAAAAGTTATAAGTTTATTCTT
s panTro5.chr6             29799137 94 + 175400573 ACTCAGTCTAGAAGCTCGTTGTCAGGGAGAAGCTCCGGCAGC-AGGCAAT-GGGGAGATTCTGACATGATTGAGGAAAAGTTATAAGTTTATTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30033771 94 + 173848474 ACTCAGTCTAGAAGCTCGTTGTCAGGGAGAAGCTCCGGCAGC-AGGCAAT-GGGGAGATTCTGACATGATTGAGGAAAAGTTAAAAGTTTATTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5837152 94 +   6154872 ACGCAGTCTAGAAGCTCGTTGTCAGGGAGAAGCTCCGGCAGC-AGGCAAT-GGGGAGATTCTGACATGATTGAGGAAAAGTTATGAGTTTATTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74563636 94 + 122973662 ATTCAGTCTAGAAGCTCGTTGTCAAGGAGAAGCTCTGGCAGC-AGGCAAT-GGGGAGATTCTGACATGATTGAGGAAAAGTTATAAGTTTATTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30030760 94 + 172585720 ACTCAGTCCAGAAGCTCCTTGTCAGGGAGAAGCTCCAGCAGC-AGACAAT-GGGGAGATTCTGACATGATTGAGGAAAACTTATAAGTTTATTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29693210 94 - 170955103 ACTCAGTCCAGAAGCTCCTTGTCAGGGAGAAGCTCCAGCAGC-AGGCAAT-GGGGAGATTCTGACATGATTGAGGAAAACTTATAAGTTTATTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2739358 95 -   2996164 ACTCAGTCCAGAAGCTCCTTGTCAGGGAGAAGCTCCAGCAGC-AGGCAATGGGGGAGATTCTGACATGATTGAGGAAAACTTATAAGTTTATTCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     491059 94 +    766320 ACTCAGTCCAGAAGCTCCTTGTCAGGGAGAAGCTCCAGCAGC-AGGCAAT-GGGGAGATTCTGACATGATTGAGGAAAAGTTATAAGTTTATTCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28948022 94 -  71996105 ACTCAGTCCAGAAGCTCCTTGTCAGGGAGAAGCTCCAGCAGC-AGGCAAT-GGGGACATTCTGCCATGATTGAGGAAAAGTTATAAGTTTATTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     124322 94 +    290775 ACTCAGTCCAGAAGCTCCTTGTCAGGGAGAAGCTCCAGCAGC-AGGCAAT-GGGGAGATTCTGACATGATTGAGGAAAAGTTATAAGTTTATTCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2578866 91 -   3067355 ACTCAGTTCAGAAGCTCCTTATCAGGGAGAAGCTCCAGCAGC-AGGCAAT-GGGGAGATTCTGACATGATTGAGGAAAAGTTATAAGTTTA---TT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            89375 84 -    242197 ACTCAGTCCAGTAGCTCCTGGTCATGATGAGGTTCTCATGGCAAGGTAAT-AAGGAGATTTTGACTTGA-----------TTATAAGTTTATTATT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1      52880 84 -   1771730 ACTCAGTCCAGAAGCTCCTGGTCATGAGGAAGTTCTCATGGCAAGGCAAT-AAGGAGATTTTGACTTGA-----------TTTTAAGTTTATTATT
i cebCap1.NW_016107755v1   C 0 I 40
s aotNan1.NW_018509740v1     140464 84 -    457564 ACTCAGTCCAGAAGCTCCTGGTCGTGAGGAAGTTCTCATGGCAAGGCAAT-AAGGAGATTTTGACTTGA-----------TTATAAGTTTATTATT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     564905 95 +    730504 ACCCAGTGGAGAAGCTCCTTGTCACAGGGAAGCTCTAGCATGAAGGCGAT-GAGGAGCTTCTGACTTGATTGCAGGTAAGTTATAAGTTTATTCTT
i proCoq1.NW_012152574v1   I 76 C 0
s otoGar3.GL873550            63738 95 +  18854210 ACCAATCTCATACGGTCCTGTTCGTGGGGACGCGCTTGTAGCAAGGCGAT-GAGGAGATTCTGACTTTATTACAAGTAAGTTCTAAGTTTATTCCC
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               57804940 91 -  94987271 ATTCGGGCCAGAAGCTCCTAATCATGGCCAAGCCTCACTTGCCAAGAGAT-GAGAAGACTTTCCCCTGACCACAG-TAAGTCCTGGGATTTTT---
i mm10.chr17               C 0 C 0

a score=25976.000000
s hg38.chr6_GL000254v2_alt   836492 2 +   4827813 CT
s panTro5.chr6             29799231 2 + 175400573 CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30033865 2 + 173848474 CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5837246 2 +   6154872 CT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74563730 2 + 122973662 CT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30030854 2 + 172585720 CT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29693304 2 - 170955103 CT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2739453 2 -   2996164 CT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     491153 2 +    766320 CT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28948116 2 -  71996105 CT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     124416 2 +    290775 CT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2578957 2 -   3067355 CT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            89459 2 -    242197 CT
i saiBol1.JH378357         C 0 C 0
s aotNan1.NW_018509740v1     140548 2 -    457564 CT
i aotNan1.NW_018509740v1   C 0 I 40
s proCoq1.NW_012152574v1     565000 2 +    730504 CT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            63833 2 +  18854210 CT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57805031 2 -  94987271 CT
i mm10.chr17               C 0 C 0
e cebCap1.NW_016107755v1      52964 40 -   1771730 I

a score=286537.000000
s hg38.chr6_GL000254v2_alt   836494  45 +   4827813 CCT-ACTGTCCATTAATGT-CCACATATCGTCAATGGTAGAGCTACC-------------------------------------------------------------------------------------
s panTro5.chr6             29799233  45 + 175400573 CCT-ACTGTCCATTAATGT-CCACATATCGTCAATGGTAGAGCTACC-------------------------------------------------------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30033867  45 + 173848474 CCT-ACTGTCCATTAATGT-CCACATATCGTCAATGGTAGAGCTACC-------------------------------------------------------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5837248  45 +   6154872 CCT-ACTGTCCATTAATGT-CCACATATCGTCAATGGTAGAGCTACC-------------------------------------------------------------------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74563732  45 + 122973662 CCT-ACTGCCCATTAATGT-CCACATATCGTCAATGGTAGAGCTACC-------------------------------------------------------------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30030856  45 + 172585720 CCT-ACTGCCCATTAATGT-CCACATATCATCAATGGTAGAGCTACC-------------------------------------------------------------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29693306  45 - 170955103 CCT-ACTGCCCATTAATGT-CCACATATCATCAATGGTAGAGCTACC-------------------------------------------------------------------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2739455  45 -   2996164 CCT-ACTGCCCATTAATGT-CCACATATCATCAATGGTAGAGCTACC-------------------------------------------------------------------------------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     491155  45 +    766320 CCT-ACTGCCCATTAATGT-CCACATATCATCAATGGTAGAGCTACC-------------------------------------------------------------------------------------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28948118  45 -  71996105 CCT-GCTGCCAATTAATGT-CCACATATCGTCAATGGTAGAGCTACC-------------------------------------------------------------------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     124418  45 +    290775 CCT-ACTGCCCATTAATGT-CCACATATCGTCAATGGTAGAGCTACC-------------------------------------------------------------------------------------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2578959  45 -   3067355 CCT-ACTGCCCATTAATGT-CCACATATCGTCAATGGTAGAGCTACC-------------------------------------------------------------------------------------
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            89461  42 -    242197 ----ATAGCTCATCAATAT-CCACATGTCTCCACTAATGGAGCCACT-------------------------------------------------------------------------------------
i saiBol1.JH378357         C 0 C 0
s proCoq1.NW_012152574v1     565002  44 +    730504 CCTACCAGCCCATCAGTGT-CCACATGTCTTCAATAGGGGGGCCG---------------------------------------------------------------------------------------
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            63835  34 +  18854210 ----GTAGTTCATCAATTT-CTACATGTTCTCAATGGTA---------------------------------------------------------------------------------------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57805033 131 -  94987271 TCT-GTAGTCCAGCAAAATCCCCCATGTCTTAAAGAGTGGGGACACATCTAGCACACGTTGTATTGTCCTGAACAAAGTATTTAACCTGTCTGGGTTTTTCTTCATCTGCAAACAATGCAGTCATTGGTTAC
i mm10.chr17               C 0 C 0
e aotNan1.NW_018509740v1     140550  40 -    457564 I
e cebCap1.NW_016107755v1      52964  40 -   1771730 I

a score=13160.000000
s hg38.chr6_GL000254v2_alt   836539 2 +   4827813 -CC
s panTro5.chr6             29799278 2 + 175400573 -CC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30033912 2 + 173848474 -CC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5837293 2 +   6154872 -CC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74563777 2 + 122973662 -CC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30030901 2 + 172585720 -CC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29693351 2 - 170955103 -CC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2739500 2 -   2996164 -CC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     491200 2 +    766320 -CC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28948163 2 -  71996105 -CC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     124463 2 +    290775 -CC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2579004 2 -   3067355 -CC
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1      53004 2 -   1771730 -CC
i cebCap1.NW_016107755v1   I 40 C 0
s proCoq1.NW_012152574v1     565046 2 +    730504 -CC
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57805164 2 -  94987271 ac-
i mm10.chr17               C 0 C 0
e saiBol1.JH378357            89503 0 -    242197 C
e otoGar3.GL873550            63869 0 +  18854210 C
e aotNan1.NW_018509740v1     140550 40 -    457564 I

a score=39936.000000
s hg38.chr6_GL000254v2_alt   836541  6 +   4827813 ----------aggagc------
s panTro5.chr6             29799280  6 + 175400573 ----------aggagc------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30033914  6 + 173848474 ----------aggagc------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5837295  6 +   6154872 ----------aggagc------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74563779  6 + 122973662 ----------aggagc------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30030903  6 + 172585720 ----------ATTAGC------
i rheMac8.chr4             C 0 I 25
s macFas5.chr4             29693353  6 - 170955103 ----------ATTAGC------
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1    2739502  6 -   2996164 ----------ATTAGC------
i macNem1.NW_012011356v1   C 0 I 18
s cerAty1.NW_012002711v1     491202  6 +    766320 ----------aggagc------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28948165  6 -  71996105 ----------aggagc------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     124465  6 +    290775 ----------aggagc------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2579006  6 -   3067355 ----------aggagc------
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            89503  6 -    242197 ----------AGGAGC------
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1      53006  6 -   1771730 ----------aggagc------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     140590  6 -    457564 ----------AGGAGC------
i aotNan1.NW_018509740v1   I 40 C 0
s proCoq1.NW_012152574v1     565048  6 +    730504 ----------aggagc------
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57805166 22 -  94987271 agtggatgcagagtgcttgagt
i mm10.chr17               C 0 C 0
e otoGar3.GL873550            63869  0 +  18854210 C

a score=113657.000000
s hg38.chr6_GL000254v2_alt   836547 19 +   4827813 accagatt--tggaatcaaac
s panTro5.chr6             29799286 19 + 175400573 accagatt--tggaatcaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30033920 19 + 173848474 accagatt--tggaatcaaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5837301 19 +   6154872 accagatt--tggaatcaaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74563785 19 + 122973662 accagatt--tggaatcaaac
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29693362 15 - 170955103 ACCCCATCAATGGTA------
i macFas5.chr4             I 3 C 0
s cerAty1.NW_012002711v1     491208 19 +    766320 accagatt--tggaatcaaac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28948171 19 -  71996105 accagatt--tggaatcaaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     124471 19 +    290775 accagatt--tggaatcaaac
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2579012 19 -   3067355 accagatt--tggaatcaaac
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            89509 19 -    242197 CTTACAtt--tggaactgagc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1      53012 19 -   1771730 attacatt--tggaactaaac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     140596 19 -    457564 CCTACAtt--tggaactaaac
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     565054 19 +    730504 accagtgt--tggactcaaac
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            63869 13 +  18854210 ------tt--tagaatcaaac
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57805188 19 -  94987271 accaaata--ggaagtcaaac
i mm10.chr17               C 0 C 0
e macNem1.NW_012011356v1    2739508 18 -   2996164 I
e rheMac8.chr4             30030909 25 + 172585720 I

a score=72600.000000
s hg38.chr6_GL000254v2_alt   836566 9 +   4827813 aggactcag
s panTro5.chr6             29799305 9 + 175400573 aggactcag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30033939 9 + 173848474 aggactcag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5837320 9 +   6154872 aggactcag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74563804 9 + 122973662 aggactcag
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29693377 6 - 170955103 AAGACT---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2739526 6 -   2996164 AGGACT---
i macNem1.NW_012011356v1   I 18 C 0
s cerAty1.NW_012002711v1     491227 9 +    766320 aggactcag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28948190 9 -  71996105 aggactcag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     124490 9 +    290775 aggactcag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2579031 9 -   3067355 aggactcag
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            89528 9 -    242197 aggaattag
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1      53031 9 -   1771730 agggcttag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     140615 9 -    457564 aggacttag
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     565073 9 +    730504 aggacttag
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            63882 9 +  18854210 agggtctag
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57805207 9 -  94987271 agggctcag
i mm10.chr17               C 0 C 0
e rheMac8.chr4             30030909 25 + 172585720 I

a score=2784888.000000
s hg38.chr6_GL000254v2_alt   836575 293 +   4827813 actccagg-cctggtcttcatcggctatgtaaccttgggcaagctacttaacctctctgcgaccatttcttcttctgtaaaaggaagatgat------attaactacctcaaagagttat-----gagaaccaggtatt-caggaaatg-tttagcatggtgcctggtgtataggaagcacacaacagatggtagctGCCAAAGTATTAACGTGGTTTTCACTAATGAATTGGAGAAAAGAATTGATATTTCATTCCCTTGTAGCACCTAGTACACAACTAGGTCTTTGGTGATTAATAAAGAA---ATA
s panTro5.chr6             29799314 293 + 175400573 actccagg-cctggtctttaccggctatgtaaccttgggcaagctacttaacctctctgcgaccatttcttcttctgtaaaaggaagatgat------attaactacctcaaagagttat-----gagaaccaagtatt-caggaaatg-tttagcacggtgcctagtgtataggaagcacacaacagatggtagctGCCAAAGTATTAACGTGGTTTTCACTAATGAATTGGAGAAAAGAATTGATATTTCATTCCCTTGTAGCACCTAGTACACAACTAGGTCTTTGGTGATTAATAAAGAA---ATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30033948 293 + 173848474 actccagg-cctggtctttactggctatgtaaccttgggcaagctacttaacctctctgcgaccatttcttcttctgtaaaaggaagatgat------attaactacctcaaagagttat-----gagaaccaagtatt-caggaaatg-tttagcacggtgcctagtgtataggaagcacacaacagatggtagctGCCAAAGTATTAACGTGGTTTTCACTAATGAATTGGAGAAAAGAATTGATATTTCATTCCCTTGTAGAACCTAGTACACAACTAGGTCTTTGGTGATTAATAAAGAA---ATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5837329 293 +   6154872 actccagg-cctggtctttaccagctatgtaaccttgggcaagctacttaacctctctgcgaccatttctttttctgtaaaaggaagatgat------attaactacctcaaagagttat-----gagaaccaggtatt-caggaaatg-tttagcatggtgcctagtgtataggaagcacacaacagatggtagctGCCAAAGTATTAACGTGGTTTTCACTAATGAATTGGAGAAAAGAATTGATATTTCATTCCATTGTAGCACCTAGTACACAACTAGGTCTTTGGTGATTAATAAAGAA---ATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74563813 293 + 122973662 actccagg-cctggtctttattggctatgtaaccttgggcaagctacttaacctctctgcgaccgtttcttcttctgtaaaaggaagatgat------actaactacctcaaagagttat-----gaaaaccaggtatt-caggaaatg-tttagcacggtgctcggtgtataggaagcacacaacagatggtagctGCCAAAGTATTAACGTAGTTTTCACTAATGAATTAGAGAAAAGAATTGATATTTCATTCCCTTGTAGCACCTAATACACAACAAGGTCTTTGGTGATTAATAAAGAA---ATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30030934 289 + 172585720 ACCCCATA-CATATTCTttatcagctatgtaaccttgggcaagctacttaacctctctgcgactgtttcttcttctgtaaaaggaagatgac------actaactacctcaaagagttat-----gagaaccaggtatt-cagaaaatg-tttagcacagtgcctggtgtataggaagtacacaacagatggtagctGCCGAAGTATTAACATGGTTTTCACTAATGAATTGGAGAAAAGAATTGATATTTCATTCCCTTGTAGCACCTAGTACACAACTAGGTCTTTGGTGATTAATAAAG-------A
i rheMac8.chr4             I 25 C 0
s macFas5.chr4             29693383 289 - 170955103 ACCCCATA-CATAGTCTttatcagctatgtaaccttgggcaagctacttaacctctctgcgactgtttcttcttctgtaaaaggaagatgac------actaactacctcaaagagttat-----gagaaccaggtatt-cagaaaatg-tttagcacagtgcctggtgtataggaagtacacaacagatggtagctGCCGAAGTATTAACATGGTTTTCACTAATGAATTGGAGAAAAGAATTGGTATTTCATTCTCTTGTAGCACCTAGTACACAACTAGGTCTTTGGTGATTAATAAAG-------A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2739532 289 -   2996164 ACCCCATA-CATAGTCTttatcagctatgtaaccttgggcaagctacttaacctctctgcgactgtttcttcttctgtaaaaggaagatgac------actaactacctcaaagagttat-----gagaaccaggtatt-cagaaaatg-tttagcacagtgcctggtgtataggaagtacacaacagatggtagctGCCGAAGTATTAACATGGTTTTCACTAATGAATTGGAGAAAAGAATTGATATTTCATTCTCTTGTAGCACCTAGTACACAACTAGGTCTTTGGTGATTAATAAAG-------A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     491236 288 +    766320 actccagg-cctggtctttatcagctatgtaaccttgggcaagctacttaacctccctgcgactgtttcttcttctgtaaaaggaagatgac------actaactacctcaaagagttat-----gagaaccaggtatt-caggaaatg-tttagcacagtgcctggtgtataggaagtacacaacagatggtagctGCCGAAGTATTAACGTGGTTTTCACTAATGAATT-GAGAAAAGAATTGATATTTCATTCCCTTGTAGCACCTAGTACACAACTAGGTCTTTGCTGATTAATAAAG-------A
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28948199 289 -  71996105 actccagg-cctggtctttatcagctatgtaaccttgggcaagctacttaacctctctgcgactgtttcttcttcggtaaaaggaagatgac------actaactacctcaaagagttat-----gagaaccaggtatt-caggaaatg-tttagcacagtgcctggtgtataggaagtacacaacagatggtagctGCCGAAGTATTAACATGGTTTTCACTAAGGAATTGGAGAAAAGAATTGATATTTCATTCCCTTATAGCACCTAGTACACAACTAGGTCTTTGGTGATTAATAAAG-------A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     124499 288 +    290775 actccagg-cctggtctttatcagctatgtaaccttgggcaagctacttaacctccctgcgactgtttcttcttctgtaaaaggaagatgac------actaactacctcaaagagttat-----gagaaccaggtatt-cagaaaatg-tttagcatagtgcctggtgtataggaagtacacaacagatggtagctGCCGAAGTATTAACGTGGTTTTCACTAATGAATT-GAGAAAAGAATTGATATTTCATTCCCTTGTAGCACCTAGTACACAACTAGGTCTTTGCTGATTAATAAAG-------A
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2579040 289 -   3067355 actccagg-cctggtctttatcagctatgtaaccttgggcaagctacttaacctctctgcgactatttcttcttctgtaagaggaagatgac------actaactacctcaaagagttat-----gagaaccaggtatt-caggaaatg-tttagcacagtgcctggtgtataggaagtacacaacagatggtagctGCCGAAGTATTAACGTGGTTTTCACTAATGAATTGGAGAAAAGAATTGATATTTCATTCCCTTGTAGCACCTAGTACACAACTAGGTCTTTGGTGATTAACAAAG-------A
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            89537 297 -    242197 agtccaga-tctgatccttattgtccaggtaaccttcagcaagttacttaaccactctgtgactgtttattcttctgtaaagagaaggtaaa------gctaactaccttgaagagttgttgtttgagagccagatatt-caggaaacg-ttttgcacaacacgtggtatataggaagcactcaacagatcataactg-taAAGTATTAACATGGTTATGACTAATAATTTGGAGAGAAGAGTTGATATCTCATTCTCTTGTAGCACTCAGTACATAACTAGGTCTTTAGTGATCAATAAAGAA---ATA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1      53040 297 -   1771730 agtccaga-tctgatccttattgtccaggtaaccttcagcaagttacttaacaactctgtgactgtttcttcttctgtaaagggaaggtaaa------gctaactaccttgaagagttgttgtgagagaaccagatatt-caggaaatg-tttagcacaacacctggtatataggaagcactcaacaggtcataactg-taAAGTAATAACATGGTTATGACTAATAAATTGGAAAGAAGAGTTGATATCTCATTTTCTTGTAGCACCCAGTACATAACTAGGTCTTTAGTGTTCAATAAAGAA---ATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     140624 296 -    457564 agtccaga-tctgatccttattgtccaggtaaccttcggcaagttacttaaccactctgagactgtttctgcttctataaagggaaggtaaa------gctaactaccttgaagagctgttgtgagagaaccagatatt-caggaaatg-tttagcacaatgcctggtatataggaagcactcaacagatcataactg-taAAGTAATAACATGGTTACGACTAATAAACTGGAGAGAAGAGTTGATATCTCATTCTCTTGTAGCACCCAGTACAT-ATTAGGTCTTTAGTGatcaataaagaa---ata
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     565082 297 +    730504 aatccaggtcccggcccttattggctgggtgaagttgggtgagttatttaatctctctgagactattttttcttccctaaaagggaggcact------attaactaccttaaagagttgttgt--gagaaccaggtatt-caggaaatt-tttagcacagcgtctggggtataggaagcactcaacggatggtaTTTGCTAAAGTAATAACATGCTTATCACTATTGGATTGGAGAGCATAATCGATATTTCACGCCCTTACAGCACCTAGTACATAGCCAGGTCTTTGATGATCAATAAAGAA---ATA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            63891 290 +  18854210 agtcctggtcatggcacttgttggc---------------aagttactttgcctctctgagac--tttactcttctataaagaaaggataagatgtgaatcgactaacttgcagggttgttgt--gagaagcaagtattccaggacattatttagcatagtgtccggtatataggaagcattcactagataataactATTAAAACAATAG-GTGGTTCTCATGACTGGATTGTAGAATATAATTTATATCTTATAGCCATGTAGCAGCTAGCACATGACTGACTCTTTGGGGACCGATAAAAAATACACA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57805216 247 -  94987271 aatccaag-actggccttc-ttgtctgtgtaatattgggcaaggtgtctcaatattctggtactgct----cctctgtaaagagagcataat------gcta-----------------------gtGAA-----TATT-CTAGAAATG---TAGCATAGGGCCAGATATACAGAAAGTTCTCAGCAGGTAGTGACAGTCACGATGTAGACATCAGC---------------AAGAGCAGATATGGCAAGCCATTCCC-TGTACCTTCTAGTGCATGCCTAGGTCTTTGGTGATCAGTAAAGAA---AAA
i mm10.chr17               C 0 I 198

a score=676303.000000
s hg38.chr6_GL000254v2_alt   836868 70 +   4827813 AATACATCCGTGAATATGAAATTAATAGGAAGAGAGTAAAGTTGTACTGGACTTTTGTG--------------GGTGTCCAAGA
s panTro5.chr6             29799607 70 + 175400573 AATACATCCGTGAATATGAAATTAATAGGAAGAGAGTAAAGTTGTACTGGACTTTTGTG--------------GGTGTCCAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30034241 70 + 173848474 AATACATCCGTGAATATGAAATTAATAGGAAGAGAGTAAAGTTGTACTGGACTTTTGTG--------------GGTGTCCAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5837622 70 +   6154872 AATATATCCGTGAATATGAAATTAATAGGAAGAGAGTAAAGTTGTACTGGACTTTTGTG--------------GGTGTCCAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74564106 84 + 122973662 AATACATCCGTGAATATGAAATTAATAGGAAGAGAGTAAAGTTGTAATGGACTTTGGTGTCCAAGAAAAAGTTGGTGTCCAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30031223 70 + 172585720 AATACATCCGTGAATATGAAATTAATAGGTAGAGAGTAAAGTTGTACTGGACTTTTGTC--------------GGTGTCCAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29693672 70 - 170955103 AATACATCCGTGAATATGAAATTAATAGGTAGAGAGTAAAGTTGTACTGGACTTTTGTC--------------GGTGTCCAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2739821 70 -   2996164 AATACATCCGTGAATATGAAATTAATAGGTAGAGAGTAAAGTTGTACTGGACTTTTGTC--------------GATGTCCAAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     491524 70 +    766320 AATACATCTGTGAATATGAAATTAATAGGAAGAGAGTAAAGTTGTACTGGACTTTTGTC--------------GGTATCCAAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28948488 70 -  71996105 AATACATCCGTGAATATGAAATTAATAGGAAGAGAGTAAAGTTGTACTGGACTTTTGTC--------------GGTGTCCAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     124787 70 +    290775 AATACATCCGTGAATATGAAATTAATAGGAAGAGAGTAAAGTTGTACTGGACTTTTGTC--------------GGTGTCCAAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2579329 69 -   3067355 AATACACTCGTAAATATGAAATTAATAGGAAGAGAGT-AAGTTGTACTGGACTTTTGAA--------------GGTGTCCAAGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            89834 70 -    242197 AATATATTCATGAATATAAAATTAATAGGAAGAGAGTAAAGTTGTACAGGACTTTTGTT--------------GGTGTCCAAGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1      53337 70 -   1771730 AATATATTCAGGAAGATGAAATTAATAGGAAGACAGTAAAGTTGTACAGGACTTTTGTT--------------GTTGTCCACGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     140920 70 -    457564 aatatattcatgaatatgaaattaataGGAAGAGAGTAAAGTTGTACAGGACTTTGGTT--------------GATGTCCAAGA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     565379 70 +    730504 AATACATCCATGAATATGGATTTAATGGGAAGAAAATAAAGTGGTACTTGACTTTTGTT--------------GGTATCCAAGA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            64181 66 +  18854210 AACGCATATATG--TGTGGAATTAATGGAAAGTAGGAAAAGTAGTGC-TGCCTATTGTT--------------GGTGACAGAG-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57805463 198 -  94987271 I

a score=1356237.000000
s hg38.chr6_GL000254v2_alt   836938 170 +   4827813 AAAAT-TAAAAAGACCAGAAGAAAGAGAGTGAGAAC------------------------------AAATACACGTTGTGAAA--CACAGAACA-----AGAGAGAACAGAAAG----AGAGTCAAAGAACTATGTAAATTGAA---------GAGACTGAAA-------------------------------------AATGACATAG---------------------AGTGAAGCAA----TGAATTAC----------------------------------------------------------------------CAAGAGTATAAGAGT-------------GTAAAAGAGGGATGC------------------------------------------------------
s panTro5.chr6             29799677 170 + 175400573 AAAAT-TAAAAAGACCAGAAGAAAGAGAGTGAGAAT------------------------------AAATATACGTTGTGAAA--CACAGAACA-----AGAGAGAACAGAAAG----AGAGTCAAAGAACTATGTAAATTGAA---------GAGACTGAAA-------------------------------------AATGACATAG---------------------AGTGAAGCAA----TGAATTAC----------------------------------------------------------------------CAAGAGTATAAGAGT-------------GTAAGAGAGGGATGC------------------------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30034311 170 + 173848474 AAAAT-TAAAAAGACCAGAAGAAAGAGAGTGAGAAT------------------------------AAATATACGTTGTGAAA--CACAGAACA-----AGAGAGAACAGAAAG----AGAGTCAAAGAACTATGTAAATTGAA---------GAGACTGAAA-------------------------------------AATGACATAG---------------------AGTGAAGCAA----TGAATTAC----------------------------------------------------------------------CAAGAGTATAAGAGT-------------GTAAGAGAGGGATGC------------------------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5837692 170 +   6154872 AAAAT-TAAAAAGACCAGAAGAAAGAGAGTGAGAAT------------------------------AAATATATGTTGTGAAA--CACAGAACA-----AGAGAGAACAGAAAG----AGAGTCAAAGAACTATGTAAATTGAA---------GAGACTGAAA-------------------------------------AATGACATAG---------------------AGTGACACAA----TGAATTAC----------------------------------------------------------------------CAAGAGTATAAGAGT-------------GTAAGAGAGGGATGC------------------------------------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74564190 166 + 122973662 AAAAT-TAAAAACACTAGAAGAAAGAGAGTGAGAAT------------------------------AAAGATATGTTGTGAAA--CACAGAACA-----AGAGAGAAC----AG----AGAGTCAAAGAATTACGTAAATTAAA---------GAGACTGGAA-------------------------------------AATGACATAG---------------------AGTTAAGCAA----TGAATTAC----------------------------------------------------------------------CAAGAGTATAAGAGT-------------GTAAGAGAGGGATGC------------------------------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30031293 166 + 172585720 AAACT-AAAAAAGACCAGAAGGAAGAGAGTGAGAAT------------------------------AAAGACATGTTGCAAAA--CGCAGAACA-----AGAGAGAAC----AG----AGAGTCAAAGAATTATGTAAATTGAA---------GAGACTGAAA-------------------------------------AATGACATAG---------------------AGTTAAGCAA----TGAATTAC----------------------------------------------------------------------CAAGAGTATAAGAGT-------------GTAAAAGCAGGACGC------------------------------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29693742 166 - 170955103 AAACT-AAAAAAGACCAGAAGGAAGAGAGTGAGAAT------------------------------AAAGACATGTTGCAAAA--CGCAGAACA-----AGAGAGAAC----AG----AGAGTCAAAGAATTATGTAAATTGAA---------GAGACTGAAA-------------------------------------AATGACATAG---------------------AGTTAAGCAA----TGAATTAC----------------------------------------------------------------------CAAGAGTATAAGAGT-------------GTAAAAGCAGGACGC------------------------------------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2739891 166 -   2996164 AAACT-AAAAAAGACCAGAAGGAAGAGAGTGAGAAT------------------------------AAAGACATGTTGCAAAA--CGCAGAACA-----AGAGAGAAC----AG----AGAGTCAAAGAATTATGTAAATTGAA---------GAGACTGAAA-------------------------------------AATGACATAG---------------------AGTTAAGCAA----TGAATTAC----------------------------------------------------------------------CAAGAGTATAAGAGT-------------GTAAAAGCAGGATGC------------------------------------------------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     491594 166 +    766320 AAACT-AAAAAAGACCAGAAGAAAGAGAGTGAGAAT------------------------------AAAGGCATGTTGCAAAA--CACAAAACA-----AGAGAGAAC----AG----AGAGTCAAAGAATTATGTAAATTGAA---------GAGACTGAAA-------------------------------------AATGACATAG---------------------AGTTAAGCAA----TGAATTAC----------------------------------------------------------------------CAAGAGTATAAGAGT-------------GTAAAAGCGGGATGC------------------------------------------------------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28948558 166 -  71996105 AAACT-AAAAAAGACCAGAAGAAAGAGAGTGAGAAT------------------------------AAAGGCATGTTGCAAAA--CACAGAACA-----AGAGAGAAC----AG----AGAGTCAAAGAGTTATGTAAATTGAA---------GAGACTGGAA-------------------------------------AATGACATAG---------------------AGTTAAGCAA----TGAATTAC----------------------------------------------------------------------CAAGAGTATAAGAGT-------------GTAAAAGCAGGACGC------------------------------------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     124857 166 +    290775 AAACT-AAAAAAGACCAGAAGAAAGAGAGTGAGAAT------------------------------AAAGGCATGTTGCAAAA--CACAAAACA-----AGAGAGAAC----AG----AGAGTCAAAGAATTATGTAAATTGAA---------GAGACTGAAA-------------------------------------AATGACATAG---------------------AGTTAAACAA----TGAATTAC----------------------------------------------------------------------CAAGAGTATAAGAGT-------------GTAAAAGCGGGATGC------------------------------------------------------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2579398 166 -   3067355 AAACG-AAAAAAGACCAGAAGAAAGAGAGTGAGAAT------------------------------AAAGACATGTTGCAAAA--CACAAAACA-----AGAGAGAAC----AG----AGAGTCAAAGAATTATGTAAATTGAA---------GAGACTGAAA-------------------------------------AATGACATAG---------------------AGTTAAGCAA----TGAATTAC----------------------------------------------------------------------CAACAGTATAAGAGT-------------GTAAAAGCGGGACAC------------------------------------------------------
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            89904 162 -    242197 AAAATTTTAAAAGACCAGGAGAAAGAGAGTGA-AAT------------------------------AAAGGTATGCTCTAAAA--CACATAACA-----AGAGAGAAC----AG----AGAGTCAAAGAATTACATAAATTGAA---------GAGATTGAGA-------------------------------------AATGACATAG---------------------AGTTACGCAA----TGAATTAT----------------------------------------------------------------------CAAGGTTATAAAAGT-------------GTAAGTGAGGG----------------------------------------------------------
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1      53407 162 -   1771730 AAAATAAAAAAAGGCCAGGAGAAAGAGAGTGA-AAT------------------------------AAAGGTATGTTATAAAA--CATAGAACA-----AGAGAGAAC----AG----AGAGTCAAAGAATTACGTAAATTGAA---------GAAACTGAGA-------------------------------------AATGACATAG---------------------AGTTATGCAA----TGAATTAC----------------------------------------------------------------------CAAGGTTATAAAAGT-------------GTAAGTGAGGG----------------------------------------------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     140990 162 -    457564 AAAATAAAAAAAGACTAGAAGAGAGAGAGTGA-AAT------------------------------AAAGATATATTCTGAAA--CACAGAACA-----AGCGAGAAC----GG----AGAGTCAAAGAATTATGTAAATTGAA---------GAGACTGAGA-------------------------------------AATGACATAG---------------------AGTTATGCAA----TGAATTAC----------------------------------------------------------------------CAAGGGTATAAAAGT-------------GTAAGTGAGGG----------------------------------------------------------
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     565449 170 +    730504 AAAAT-AAAAAAGACCAGGAGAA--AGGTGAAGAA-------------------------------CAAGAAGTGTTCTGACA--CTTAGAACa-----agagagaac----agaaagaaagccaaagaacgatagaaaCTGCAGAGACTGAGGAGACTGAAA-------------------------------------AATAACACGG---------------------AGTGAGACAA----TAAGTTAC----------------------------------------------------------------------CAAGAATATAAACAA-------------GTGAG------ATGC------------------------------------------------------
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            64247 151 +  18854210 -------GAAAGAACTGGAATAAATAGGATAAGGA-------------------------------AAGCATGTGCTATTAAAGTCTAGCAACA-----ACAGAGAAC----AG------AGTCTAAGGAAGATACCAACTGAA----------AGATTCAGA-------------------------------------AAAAACATTC---------------------GGTGA---AG----TAAGTTGC----------------------------------------------------------------------CAAGAGAGTAAGACT-------------GTGAG----GAATGC------------------------------------------------------
i otoGar3.GL873550         C 0 T 50353
s mm10.chr17               57805661 399 -  94987271 AAAAT-GGAAATAATTGGAAGACTGTAAGTAGAAATTTGGTGGTTCAGAGTTAGATCAGGTAAAGGATGGGAGCGTTTTGAAT--CACAGCACACACACACAGAGAA-----AG----ACAGTCAAAAGATGATGAACACTGAA---------GAACTTGAAAATAATAAACTTAAAGTGACCTGGAATTCATGAAAGCCAGTGACACAGAAAGGATATTAAAGAGTTCACAGCTAAGAAACCCTTGAATTGCttttttctttctctttttcttttttttttttttttttttttttttagtatagaatggagtttactcatggcatggggaggagagttgagagggtagtagaaacagagaaaggcagagaaagagagacagagatagagacagagacagagacagacagagacagagac
i mm10.chr17               I 198 C 0

a score=48300.000000
s hg38.chr6_GL000254v2_alt   837108 12 +   4827813 AGAAAG-TGTATT
s panTro5.chr6             29799847 12 + 175400573 AGAAAG-TGTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30034481 12 + 173848474 AGAAAG-TGTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5837862 12 +   6154872 AGAAAG-TGTATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74564356 12 + 122973662 AGAAAG-TGTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30031459 12 + 172585720 AGAAAG-CATATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29693908 12 - 170955103 AGAAAG-CATATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2740057 12 -   2996164 AGAAAG-CATATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     491760 12 +    766320 AGAAAG-CATATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28948724 12 -  71996105 AGAAAG-CATATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     125023 12 +    290775 AGAAAG-CATATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2579564 13 -   3067355 AGAAAATCATATT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            90066  3 -    242197 -----G-----TT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1      53569  3 -   1771730 -----G-----TT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     141152  3 -    457564 -----A-----TT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     565619 12 +    730504 AGAAAC-AGTATT
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57806060 12 -  94987271 agcaag-aataaa
i mm10.chr17               C 0 C 0
e otoGar3.GL873550            64398 50353 +  18854210 T

a score=524790.000000
s hg38.chr6_GL000254v2_alt   837120  54 +   4827813 AGAATG--ATGGTT-----------------GACAGATAAATAAGGAGGA----------------------------------------------------------GTTGGCTATTTTTTACCAACACA
s panTro5.chr6             29799859  54 + 175400573 AGAATG--ATGGTT-----------------GACAGATAAATAAGGAGGA----------------------------------------------------------GTTAGCTATTTTTTACCAACACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30034493  54 + 173848474 AGAATG--ATGGTT-----------------GACAGATAAATAAGGAGGA----------------------------------------------------------GTTAGCTATTTTTTACCAACACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5837874  54 +   6154872 AGAATG--ATGGTT-----------------GACAGATAAATAAGGAGGA----------------------------------------------------------GTTGGCTATTTTTTACCAACACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74564368  54 + 122973662 AGAATG--ATGGTT-----------------GACAGATAAATAAGGAGCA----------------------------------------------------------GTTGGCTGTTTTTTACCAATACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30031471  54 + 172585720 AGAATG--ATGGTT-----------------GACAGGTGAATAAGGAGCA----------------------------------------------------------GTTGGCTATTTTTTACCAACACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29693920  54 - 170955103 AGAATG--ATGGTT-----------------GACAGATGAATAAGGAGCA----------------------------------------------------------GTTGGCTATTTTTTACCAACACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2740069  54 -   2996164 AGAATG--ATGGTT-----------------GACAGATGAATAAGGAGCA----------------------------------------------------------GTTGGCTATTTTTTACCAACACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     491772  54 +    766320 AGAATG--ATGGTT-----------------GACAGATGAATAAGGAGCA----------------------------------------------------------GTTGGCTATTTTTTACCAACACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28948736  54 -  71996105 AGAATG--ATGGTT-----------------GACAGATGAATAAGGAGCA----------------------------------------------------------GTTGGTTATTTTTTACCAACACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     125035  54 +    290775 AGAATG--ATGGTT-----------------GACAGATGAATAAGGAGCA----------------------------------------------------------GTTGGCTATTTTTTACCAACACA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2579577  54 -   3067355 AGAATG--ACGGTT-----------------GACAGATGAATAAGGAGCA----------------------------------------------------------GTTAGCTATTTTTTACCAACACA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            90069  53 -    242197 AGAAGG--ATAGTT-----------------GACAGATGTATAAGAAGCA----------------------------------------------------------GTTGGCTA-TTTTTAACAACACA
i saiBol1.JH378357         C 0 I 2736
s cebCap1.NW_016107755v1      53572  54 -   1771730 AGAATG--ATAGTT-----------------AACAGATGTATAAGGAGCA----------------------------------------------------------GTTGGCTATTTTTTGCCAACACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     141155  54 -    457564 AGAATG--ATAGTT-----------------GACAGATAAATAAGGAGCA----------------------------------------------------------GTTGGCTATTTTTTACCAACACA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     565631  54 +    730504 GGAATA--ATAGTT-----------------GATGGATGAGTAAGAAGCA----------------------------------------------------------GTTGGCTATTTTTTAGCTACACA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            14045  54 +  18854210 AGAATGCTACAGTT-----------------CATGGATGAATAACACATA----------------------------------------------------------GTGGGCAATTGCTGAG--ATACA
i otoGar3.GL873550         T 50353 C 0
s mm10.chr17               57806072 129 -  94987271 ggaata--gaggccagccatgagcacatggagagagaagaacaaggggaatgggagagaggggggagggatgagagaacagagctggagcaagaaggcaggggcaagggtgaATTGCTTTTTAGTAACACA
i mm10.chr17               C 0 C 0

a score=70586.000000
s hg38.chr6_GL000254v2_alt   837174 8 +   4827813 AAGGGTGT
s panTro5.chr6             29799913 8 + 175400573 AAGGGTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30034547 8 + 173848474 AAGGGTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5837928 8 +   6154872 AAGGGTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74564422 8 + 122973662 AAGGGTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30031525 8 + 172585720 AAGGATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29693974 8 - 170955103 AAGGATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2740123 8 -   2996164 AAGGATGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     491826 8 +    766320 AAGGACGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28948790 8 -  71996105 AAGGATGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     125089 8 +    290775 AAGGACGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2579631 8 -   3067355 AAGGATGT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            92858 8 -    242197 AAGAGTGT
i saiBol1.JH378357         I 2736 I 11
s cebCap1.NW_016107755v1      53626 8 -   1771730 AAGAGTGT
i cebCap1.NW_016107755v1   C 0 I 2782
s aotNan1.NW_018509740v1     141209 8 -    457564 AAGAGTGT
i aotNan1.NW_018509740v1   C 0 I 11
s proCoq1.NW_012152574v1     565685 8 +    730504 AAGGATAT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            14099 8 +  18854210 AAAGATAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57806201 3 -  94987271 -AGA----
i mm10.chr17               C 0 C 0

a score=92981.000000
s hg38.chr6_GL000254v2_alt   837182 10 +   4827813 AATGTTATAA
s panTro5.chr6             29799921 10 + 175400573 AATGTTATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30034555 10 + 173848474 AATGTTATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5837936 10 +   6154872 AATGTTATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74564430 10 + 122973662 AATGTTATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30031533 10 + 172585720 AATGTTATAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29693982 10 - 170955103 AATGTTATAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2740131 10 -   2996164 AATGTTATAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     491834 10 +    766320 AATGTTATAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28948798 10 -  71996105 AATGTTATAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     125097 10 +    290775 AATGTTATAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2579639 10 -   3067355 AATGTTATAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            92877 10 -    242197 AATGTTATCA
i saiBol1.JH378357         I 11 C 0
s aotNan1.NW_018509740v1     141228 10 -    457564 AATGTTATCA
i aotNan1.NW_018509740v1   I 11 C 0
s proCoq1.NW_012152574v1     565693 10 +    730504 GCTGCTACAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            14107 10 +  18854210 AATGCTGTAA
i otoGar3.GL873550         C 0 I 2192
s mm10.chr17               57806204  9 -  94987271 AATGCTAAA-
i mm10.chr17               C 0 C 0
e cebCap1.NW_016107755v1      53634 2782 -   1771730 I

a score=43384.000000
s hg38.chr6_GL000254v2_alt   837192 7 +   4827813 GACAATA
s panTro5.chr6             29799931 7 + 175400573 GACAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30034565 7 + 173848474 GACAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5837946 7 +   6154872 GACAATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74564440 7 + 122973662 GACAATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30031543 7 + 172585720 GACAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29693992 7 - 170955103 GACAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2740141 7 -   2996164 GACAATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     491844 7 +    766320 GACAATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28948808 7 -  71996105 GACAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     125107 7 +    290775 GACAATA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2579649 7 -   3067355 GACAATA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            92887 4 -    242197 TTCA---
i saiBol1.JH378357         C 0 C 0
s aotNan1.NW_018509740v1     141238 4 -    457564 TTCA---
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     565703 7 +    730504 GACAATA
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57806213 7 -  94987271 GACAACA
i mm10.chr17               C 0 C 0
e otoGar3.GL873550            14117 2192 +  18854210 I
e cebCap1.NW_016107755v1      53634 2782 -   1771730 I

a score=137561.000000
s hg38.chr6_GL000254v2_alt   837199 12 +   4827813 TAGGAATGATTT
s panTro5.chr6             29799938 12 + 175400573 TAGGAATGATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30034572 12 + 173848474 TAGGAATGATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5837953 12 +   6154872 TAGGAATGATTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74564447 12 + 122973662 TAGGAATGATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30031550 12 + 172585720 TAGGAATGATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29693999 12 - 170955103 TAGGAATGATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2740148 12 -   2996164 TAGGAATGATTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     491851 12 +    766320 CAGGAATGATTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28948815 12 -  71996105 TAGGAATGATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     125114 12 +    290775 CAGGAATGATTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2579656 12 -   3067355 TAGGAATGATTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            92891 12 -    242197 TAggaatgattt
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1      56416 12 -   1771730 TAGGAATGATTT
i cebCap1.NW_016107755v1   I 2782 C 0
s aotNan1.NW_018509740v1     141242 12 -    457564 TAGGAATGATTT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     565710 12 +    730504 TAGGAATGATTT
i proCoq1.NW_012152574v1   C 0 I 567
s mm10.chr17               57806220 11 -  94987271 -AGGGAGAACTT
i mm10.chr17               C 0 C 0
e otoGar3.GL873550            14117 2192 +  18854210 I

a score=335321.000000
s hg38.chr6_GL000254v2_alt   837211 40 +   4827813 TGTAAAAGTAATAATTGAAAT---AGTCATTGCGTCTTCAGGA
s panTro5.chr6             29799950 40 + 175400573 TGTAAAAGTAATAATTGAAAC---AGTCGTTGCGTCTTCAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30034584 40 + 173848474 TGTAAAAGTAATAATTGAAAC---AGTCGTTGCGTCTTCAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5837965 40 +   6154872 TGTAAAAGTAATAATTGAAAC---AGTCGTTGCGTCTTCAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74564459 40 + 122973662 TGTAAAAGTAATAATCGAAAC---AGTCATTGCCTCTTCAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30031562 40 + 172585720 TATAAAAATAATAATGGAAAT---AGTCGTTGCCTCTTCAGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29694011 40 - 170955103 TATAAAAATAATAATGGAAAT---AGTCGTTGCCTCTTCAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2740160 40 -   2996164 TATAAAAATAATAATGGAAAT---AGTCAGTGCCTCTTCAGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     491863 40 +    766320 TATAAAAATAATAATGGAAAT---AGTCAGTGCCTCTTCAGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28948827 40 -  71996105 TATAAAAATAATAATGGAAAT---AGTCGTTGCCTCTTCAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     125126 40 +    290775 TATAAAAATAATAATGGAAAT---AGTCAGTGCCTCTTCCGGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2579668 40 -   3067355 TATAAAAATAATAATTGAAAT---AGTCATTGCCTCTTCAGGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            92903 40 -    242197 ggtaaaaataataatcaaaat---agtcattgcctcttcagga
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1      56428 40 -   1771730 TGTAAAAATACTAATCAAAAT---AGTCATTGTCTCTTCAGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     141254 40 -    457564 TGTAAAAATAATAATAAAAAT---AGTCATTGCCTCTTCAGGA
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57806231 39 -  94987271 ----AAATAAATAATCTAAATAAGAGTGATTGCTTCTTAAGGG
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     565722 567 +    730504 I
e otoGar3.GL873550            14117 2192 +  18854210 I

a score=2789435.000000
s hg38.chr6_GL000254v2_alt   837251 308 +   4827813 GTAGGTAGTAGGTATGATTAGGGAAGGGCACGCAGAAGGCTTTTAAG--ATTTAAACAATCTTTTGTTAAAATATTCAACAATATTTT----------AAAGGA----AAAATTTTTC--TCAGAGTAAAAAGAAT-ATAGGAGGAAG---GAAACGAAAAAA--GAGACAAATATAAACAGGTTGAACAAATAAAAAGATGAGATGGGGCTTTTAAACACACAAAAAAGAGACACTGCAATGGGTAGA----TGCTGCCAACCTATAGCCTCTCCAGCCACCTCCCCATCAACTTGCCCAGTTCCTGCCTCTCAACTGCCAGAGTGGCTGCCACC
s panTro5.chr6             29799990 308 + 175400573 GTAGGTAGTAGGTATGATTAGGGAAGGGCACGCAGAAGGCTTTTCAG--ATTTAAACAATCTTTTGTTAAAATATTTAACAATATTTT----------AAAGGA----AAAATTTTTC--TCAGagtaaaaagaat-ataggaggaag---gaaaagaaaaaa--gagacaaatataaacagaTTGAACAAATAAAAAGATGAGTTGGGGCTTTTAAACACACAAAAAAGAGACACTGCAATGGGTAGA----TGCTGCCAACCTATAGCCTCTCCAGCCACCTCCCCATCAACTTGCCCAGTTCCTGCCTCTCAACTGCCAGAGTGGCTGCCACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30034624 308 + 173848474 GTAGGTAGTAGGTATGATTAGGGAAGGGCACGCAGAAGGCTTTTCAG--ATTTAAACAATCTTTTGTTAAAATATTTAACAATATTTT----------AAAGGA----AAAATTTTTC--TCAGagtaaaaagaat-ataggaggaag---gaaaagaaaaaa--gagacaaatataaacagaTTGAACAAATAAAAAGATGAGTTGGGGCTTTTAAACACACAAAAAAGAGACACTGCAATGGGTAGA----TGCTGCCAACCTATAGCCTCTCCAGCCACCTCCCCATCAACTTGCCCAGTTCCTGCCTCTCAACTGCCAGAGTGGCTGCCACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5838005 308 +   6154872 GTAGGTAGTAGGTATGATTAGGGAAGGGCACGCAGAAGGCTTTTAAG--ATTTAAACAATCTTTTGTTAAAATATTTAACAATATTTT----------AAAGGA----AAAATTTTTC--TCAGagtaaaaagaac-ataggaggaag---gaaaagaaaaaa--gagacaaatataaacagaTTGAACAAATAAAAAGATGAGTTGGGGCTTTTAAACACACAAAAAAGAGACACTGCAATGGGTAGA----TGCTGCCAACCTATAGCCTCTCCAGCCACCTCCCCATCAACTTGCCCAGTTCCTGCCTCTCAACTGCCAGAGTGGCTGCCACC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74564499 308 + 122973662 GTAAGTAGTGGGTATGATTAGGGAAGGGCATGCAGAAAGCTTTTAAG--ATTTAAACGATCTTTTGTTAAAATATTTAACAATATTTT----------AAAGGA----AAAATTTTTC--TCAGagtaaaaagaat-ataggaggaag---gaaaagaaaaaa--gaGGCAAATATAAACAGATTGAACAAATAAAAAGATGAGATGGAGCTTTTAAACACACAAAAAAGAGACATTGCAATGGGGAGA----TGCTGCCAACCTATAGCCTCTCCAGCCACCTCCCCATCAACTTGCCCAGTTCCTGCCTCTCAACTGCCAGACTGGCTGCCACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30031602 297 + 172585720 GTAGGTAGTGGGTATGATTAGGGAAGGGCACACAGAAGGCTTTTAAG--ATTTAAATAATCTTTTGTTAAAATATTTAACAGTATTTT----------AAAGGA----AAACTTTTTC--TTAGAGTAAAAAGAAT-ATAGGAGGAAG---GAAAAGAAAAAA-AGAGACAAATATAAACAGATTGAACAAATAAAAAGATGAGATGGGGCTTTTAAACACACAAAAAAGAGACACTGCAATGGGGAGA----CACTGCCAACCTATAGCCTTTCCAGCCACCTCCCCGACGACTTGCCCAGTTCCTGCCTCTCA------------GCTGCCACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29694051 297 - 170955103 GTAGGTAGTGGGTATGATTAGGGAAGGGCACACAGAAGGCTTTTAAG--ATTTAAATAATCTTTTGTTAAAATATTTAACAGTATTTT----------AAAGGA----AAACTTTTTC--TTAGAGTAAAAAGAAT-ATAGGAGGAAG---GAAAAGAAAAAA-AGAGACAAATATAAACAGATTGAACAAATAAAAAGATGAGATGGGGCTTTTAAACACACAAAAAAGAGACACTGCAATGGGGAGA----CACTGCCAACCTATAGCCTTTCCAGCCACCTCCCCGACAACTTGCCCAGTTCCTGCCTCTCA------------GCTGCCACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2740200 297 -   2996164 GTAGGTAGTGGGTATGATTAGGAAAGGGCACACAGAAGGCTTTTAAG--ATTTAAACAATCTTTTGTTAAAATATTTAACAATATTTT----------AAAGGA----AAACTTTTTC--TTAGAGTAAAAAGAAT-ATAGGAGGAAG---GAAAAGAAAAAA-CGAGACAAATATAAACAGGTTGAACAAATAAAAAGATGAGATGGGGCTTTTAAACACATAAAAAAGAGACACTGCAATGGGGAGA----CACTGCCAACCTATAGCCTTTCCAGCCACCTCCCCAACAACTTGCCCAGTTCCTGCCTCTCA------------GCTGCCACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     491903 297 +    766320 GTAGGTAGTGGGTATGATTAGGAAAGGGCACACAGAAGGCTTTTAAG--ATTTAAACAATCTTTTGTTAAAATATTTAACAATATTTT----------AAAGGA----AAACTTTTTC--TTAGAGTAAGAAGAAT-ATAGGAGGAAG---GAAAAGAAAAAA-CGAGACAAATATAAGCAGGTTGAACAAATAAAAAGATGAGATGGGGCTTTTAAAAACATAAAAAAGAGACACTGCAATGGGGAGA----CACTGCCAACCTATAGCCTTTCCAGCCACCTCCCCAACAACTTGCCCAGTTCCTGCCTCTCA------------GCTGCCACC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28948867 297 -  71996105 GTCGGTAGTGGGTATGATTAGGAAAGGGCACACAGAAGGCTTTTAAG--ATTTAAACAATCTTTTGTTAAAATATTTAACAATATTTT----------AAAGGA----AAACTTTTTC--ATAGAGTAAAAAGAAC-ATAAGAGGAAG---GAAAAGAAAAAC-AGAGACAAATATAAACAGATTGAACAAATAAAAAGATGAGATGGGGCTTTTAAACACACAAAAAAGAGACACTGCAATGGGGAGA----CACTGCCAACCTATAGCCTTTCCAGCCACCTCCCCAACGACTTGCCCAGTTCCTGCCTCTCA------------GCTGCCACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     125166 297 +    290775 GTAGGTAGTGGGTATGATTAGGAAAGGGCACACAGAAGGCTTTTAAG--ATTTAAACAATCTTTTGTTAAAATATTTAACAATATTTT----------AAAGGA----AAACTTTTTC--TTAGAGTAAAAAGAAT-ATAGGAGGAAG---GAAAAGAAAAAA-CGAGACAAATATAAACAGGTTGAACAAATAAAAAGATGAGATGGGGCTTTTAAAAACATAAAAAAGAGACACTGCAATGGGGAGA----CACTGCCAACCTATAGCCTTTCCAGCCACCTCCCCAACAACTTGCCCAGTTCCTGCCTCTCA------------GCTGCCACC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2579708 295 -   3067355 GTAGGTAGCGGGTATGATTAGGGAAGGGCACACAGAAGGCTTTTAAG--ATTTAAACAATCTTTTGTTAAAATACTTAACAATATTTT----------AAAGCA----AAACTTTTTC--TTAGAGTAAAAAGAAT-ATAGGA-GAAG---GAAAAGAAAAAA-AGAGACAAATATAAACAGATTGAACAAATAAAAAGATGAGATGGGGCTTTTAAACACAC-AAAAATAGACACTGCAATGGGGAGA----CACTGCCAACCTATAGCCTTTCCAGCCACCTCCCCAACAACTTGCCCAGTTCCTGCCTCTCA------------GCTGCCACC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            92943 303 -    242197 gtaggtagtgggtatgattaaggaagggcacacagaaggcttttaag--atttgaacaatcttttgttaagATATTTAACAATATTTT----------AAAGGGCAATAAACTTTTTC--TCAAAGTAAAAAGAAT-ATAGGAGAAAG---AAAAAGAAAAAA--GAAAGAAATAT----AGATTGAACAAATAAAAAGA-----TAGATCTTTCAAATGCACAAAAATGAGACACTGTAATGAGAAGA----TACTGAAAACCTATAGCCTCTCCAGACACCTCCTCATCAACTTGCCCAGTTCCTGCCTCTCAACTGCCAGAGTGGCTGCCAAC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1      56468 303 -   1771730 GTAGGTAGTGGGTATGATTAAGGAAGGGCACACAGAAGGCTTTTAAG--ATCTGAACAATCTTTTGTTAAAATATTTAACAATATTTT----------AAAGGGCAATAACATTTTTC--TCAAAGTAAAAAGAAT-ATAGGAGAAAG---AAAAAGAAAAAA--TAAAGAAATAT----AGATTGAACAAATAAAAAGA-----TAGATCTTTTAAATGCACAAAAAAGAGACACTGTAATGAGGAGA----TACTGACAACCTATAGCCTCTCCAGACACCTCCCCATCAACGTGCCCAGTTCCTGCCTCTCAACTGCCAGAGTGGCTGCCAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     141294 302 -    457564 GTAGGTAGTGGGTATGATTAAGGAAGGGCATACAGAAGGCTTTTAAG--ATTTGGACAATCTTTTGTTAAAATATTTAACAATATTTT----------AAAGGGCAAAAAACTTTTTC--TCAAAGTAAAAA-AAT-ATAGGAGAAAG---AAAAAGAAAAAA--GAAAGAAATAT----AGATTGAACAAATAAAAAGA-----TAGAGCTTTTAAACATGCAAAAAAGAGACACTGTAATGGGGAGA----TTCTGACAACGTATAGCCTCTCCAGACACCTCTCCATCAACTTGCCCAGTTCCTGCCTCTCAACTGCCAGAGTGGCTGCCAAC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     566289 325 +    730504 GTAGGAAGTAGGTATGATTAGGGAGGGACACACAGAAGGCTTTTAAG--ATTTAAATAGTCCGTTGTTCAAACATTTAATAATATTTTTAAAAATTAAAGAGAA----AAAACTTTTCTTTCAAGGTGAAAATAACAACAAGAGGAAG---GAAAGGGAAAAAAAGAGAGAAA-AGAGATAGATCGGACAAATAAAGAGACGAGATGGGACTTTTAAACACA-AAAAAAGAGACACTGTAATGGGGAAAATGTTGCCGCCAACCTGCGACCTCTCCAGACACTGCCCCATCCATTTGCCCAGTTCCCGCCTCTCAACTGCCACAGCAGCTGCCACC
i proCoq1.NW_012152574v1   I 567 I 181
s mm10.chr17               57806270 293 -  94987271 GTAGAAAATGATTGTAACCA-GAAGAGACATTCAAATGGCTTCTAAGCCATTTGTAGAAATTATTATGACAGT-----AAAGCACTTA----------AAATTA----GGATATTCGC--TCAGAGAGAAAAAAA--ATTGGAAGAAGATAAGAAAGCAGAAG--GAGACTAA-AGAATTAAACTGGAGGA--GGAAAGATGGTACAGAACTTCCAAGCACAC-TAGAGGGGAC----CTGTGAGGAGA----CACAGCTCACCCAT----CCTCCACAAGCCCTCCCATCAGCCAGCAGGGATCCTGACT-TAAGCTGTCACAGTGACTGTCACT
i mm10.chr17               C 0 C 0
e otoGar3.GL873550            14117 2192 +  18854210 I

a score=1582473.000000
s hg38.chr6_GL000254v2_alt   837559 190 +   4827813 GTCCACCCATATCTGAGTTGGCCCTGTGTGCTGAAACTCTCTTCACCTTCTC-AAAAACACAGTCCCCTCCTCCAGGAAGCATTCCCTGATTCACTCAACCACCCTACTCATTTTCTTTACAGATCTATCTCTCACCTCTAGCCCCCTACCCCAA--TATTTTTGCCTTATTTGCCTGCAA-TGTTTCAAGTTT
s panTro5.chr6             29800298 190 + 175400573 GTCCACCCACATCTGAGTTGGCCCTGTGTGCTGAAACTCTCTTCACCTTCTC-AAAAACACAGTCCCCTCCTCCAGGAAGCATTCCCTGATTCACTCAACCACCCTACTCATTTTCTTTACAGATCTATCTCTCACCTCTAGCCCCCTACCCCAA--TATTTTTGCCTTATTTGCCTGCAG-TGTTTCAAGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30034932 190 + 173848474 GTCCACCCACATCTGAGTTGGCCCTGTGTGCTGAAACTCTCTTCACCTTCTC-AAAAACACAGTCCCCTCCTCTAGGAAGCATTCCCTGATTCACTCAACCACCCTACTCATTTTCTTTACAGATCTATCTCTCACCTCTAGCCCCCTACCCCAA--TATTTTTGCCTTATTTGCCTGCAA-TGTTTCAAGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5838313 191 +   6154872 GTCCACCCACATCTGAGTTGGCCCTGTGTGCTGAAACTCTCTTCACCTTCTCAAAAAACACAGTCCCCTCCTCCAGGAAGCATTCCCTGATTCACTCAACCACCCTAATCATTTTCTTTACAGATCTATCTCTCACCTCTAGCCCCCTACCCCAA--TATTTTTGCCTTATTTGCCTGCAA-TGTTTCAAGTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74564807 190 + 122973662 GTCCACCCACATCTGAGTTGGCCCTGTGTGCTGCAACTCTCTTCACCTTCTC-AAAAACACAGTCCTGTCCTCCAGGAAGCATTCCCTGATTCACTCAACCACCCTGCTCATTTTCTTTACAGATCTCTCTCTCACCTCTAGTCCCCTACCCCAA--TATTTTTGCCTTATTTGCCTGCAA-TGTTTCAAGTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30031899 190 + 172585720 ATCCACCCACATCTGAGTTGGCCCTGTATGCTGAAACTCTCCTTCCCTTCTC-AAAAGCACAGTCCCCTCCTCCAGGAAGCATTCCCTGATTCACTCAACCACCCTACTCATTTTCTTTACAGATCTGTTTCTCATCTCTACCCCACTACCCCAA--TATTTTTGCCTTATTTGCCCACAA-TGTTTCAAGTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29694348 190 - 170955103 ATCCACCCACATCTGAGTTGGCCCTGTATGCTGAAACTCTCCTTCCCTTCTC-AAAAGCACAGTCCCCTCCTCCAGGAAGCATTCCCTGATTCACTCAACCACCCTACTCATTTTCTTTACAGATCTGTTTCTCATCTCTACCCCGCTACCCCAA--TATTTTTGCCTTATTTGCCCACAA-TGTTTCAAGTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2740497 190 -   2996164 ATCCACCCACATCTGAGTTGGCCCTGTATGCTGAAACTCTCTTTCCCTTCTC-AAAAGCACAGTCCCCTCCTCCAGGAAGCATTTCCTGATTCACTCAACCACCCTACTCATTTTCTTTACAGATCTGTTTCTCATCTCTACCCCGCTACCCCAA--TATTTTTGCCATATTTGCCTGCAA-TGTTTCAAGTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     492200 190 +    766320 ACCCACCCACATCTGAGTTGGCCCTGTATGCTGAAACTCTCCTTCCCTTCTC-AAAAGCACAGTCCCCTCCTCCAGGAAGCATTCCCTGATTCACTCAACCACCCTACTCATTTTCTTTACAGATCTGTTTCTCATCTCTACCCCGCTACCCCAA--TATTTTTGCCATATTTGCCTACAA-TGTTTCAAGTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28949164 190 -  71996105 ATCCACCCACATCTGAGTTGGCCCTGTATGCTGAAACTCTCCTTCCCTTCTC-AAAAACACAGTCCCCTCCTCCAGGAAGCATTCCCTGATTCACTCAACCACCCTACTCATTTTCTTTACAGATCTGTTTCTCATCTCTACCCCGCTACCCCAA--TATTTTTGCCTTATTTGCCTGCAA-TGTTTCAAGTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     125463 190 +    290775 ACCCACCCACATCTGAGTTGGCCCTGTATGCTGAAACTCTCCTTCCCTTCTC-AAAAGCACAGTCCCCTCCTCCAGGAAGCATTCCCTGATTCACTCAACCACCCTACTCATTTTCTTTACAGATCTGTTTCTCATCTCTACCCCGCTACCCCAA--TATTTTTGCCATATTTGCCTGCAA-TGTTTCAAGTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2580003 188 -   3067355 ATCCACCCACAGCTGAGTTGGCCCTGTATGCTGAAACTCTC--TCCCTTCTC-AAAAACACAgtcacctcctccagaaagcattccctgattcactcaaCCACCCTACTCATTTTCTGTACTGATCTGTTTCTCATCTGTACCCCGCTACCCCAA--TATTTTTGCCTTATTTGCCTGCAA-TGTTTCAAGTTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            93246 188 -    242197 TTCCACCCACATCTGGGTTGGCCCTGTGTGCTACAATTCTCTTTCCCTTCTC-AAAAACACAgtgacctcctctaggaagcattccctgattcact-aaCCACCCTACTCATTTCCTTTACAGGTCTATCTCTCACTCCTACTCTGC--CCCCAA--TACTTTTACCTTATTTGTCTGCCAATGTTTCAAGATT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1      56771 182 -   1771730 TTCCACCCACATCTGAGTTGATCCTGTGTGCTACAACTCTCTTTCCCTTCTC-AAAAACACAgttacctcctctaggaagcattccctgaGTCACT-AGCCACCCTACTCATTTCCTTTACAGG----TCTCTCACTCCTACCCCGC--CCCCAA--TACCTTTGCCTTATTTGTCTGCCA--GTTTCAAGATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     141596 188 -    457564 TTCCACCCACATCTGAGTTGGCCCTGTGTGCTACAACTCTCTTTCCCTTCTC-AAAAACACAgtcacctcctctaggaagcattccctgattcactcaaCCACCCTACTCATTTCCTTTACAGGTCTATCTCTCACCCCTACCCTGC--CCCCAA--TACTTTTGCCTTATTTGCCTGCAA-TGTTTCAAGATT
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57806563 139 -  94987271 -GCCTGCCACCTCCAAGGTGAGCTTCAGTGTCCAGGATCCCCTT---TTCTC-AACAGTAGCATCTCTGCCTGCAGGATGCATCAC-------------------------TGTTCTCTACACTCCTGTCTCTC---------------CCCCAGGTCATTTCTGGCTTTCAGTTCTGGGG-TGC---------
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     566614 181 +    730504 I
e otoGar3.GL873550            14117 2192 +  18854210 I

a score=270829.000000
s hg38.chr6_GL000254v2_alt   837749 29 +   4827813 TCTGCTGATGTTGAATGTACTACCCAGGG
s panTro5.chr6             29800488 29 + 175400573 TCTGCTGATGTTGAATGTACTACCCAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30035122 29 + 173848474 TCTGCTGATGTTGAATGTACTACCCAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5838504 29 +   6154872 TCTGCTGATGTTGAATGTACTATCCAGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74564997 29 + 122973662 TCTGCTGATGTTGAATGAACTACCCAGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30032089 29 + 172585720 TCTGCTGATGCTGAATGTACTAGCCAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29694538 29 - 170955103 TCTGCTGATGCTGAATGTACTAGCCAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2740687 29 -   2996164 TCTGCTGATGCTGAATGTACTAGCCAGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     492390 29 +    766320 CCTGCTGATGCTGAATGTACTACCGAGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28949354 29 -  71996105 TCTGCTGATGCTGAATGTACTACCCAGGG
i chlSab2.chr17            C 0 I 25
s manLeu1.NW_012099233v1     125653 29 +    290775 CCTGCTGATGCTGAATGTACTACCGAGGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2580191 29 -   3067355 TCTGCTGATGCTGAATGTATTACCCAGGG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            93434 29 -    242197 TCTGGTGATGTTGAATGTATTACCCTGGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1      56953 29 -   1771730 TCTGGTGATGTTGAATATTCTACCCAGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     141784 29 -    457564 TCTGGTGATGTTGAATATACTACCTAGGG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     566795 29 +    730504 TCTGATGATGTTGAGTGTGCTGCCTAGGG
i proCoq1.NW_012152574v1   I 181 C 0
s mm10.chr17               57806702 25 -  94987271 TGTGATTATGTTCAATGTTCTGCTG----
i mm10.chr17               C 0 C 0
e otoGar3.GL873550            14117 2192 +  18854210 I

a score=80619.000000
s hg38.chr6_GL000254v2_alt   837778 15 +   4827813 TTTTTCAAAGCCATG
s panTro5.chr6             29800517 15 + 175400573 TTTTTCAAAGCCATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30035151 15 + 173848474 TTTTTCAAAGCCATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5838533 15 +   6154872 TTTTTCAAAGCCATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74565026 15 + 122973662 TTTTTCAAAGCCATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30032118 13 + 172585720 TTTTTCAA--CCCTG
i rheMac8.chr4             C 0 I 12
s macFas5.chr4             29694567 13 - 170955103 TTTTTCAA--CCCTG
i macFas5.chr4             C 0 I 12
s macNem1.NW_012011356v1    2740716 13 -   2996164 TTTTTCAA--CCCTG
i macNem1.NW_012011356v1   C 0 I 12
s cerAty1.NW_012002711v1     492419 13 +    766320 TTTTTCAA--CCCTG
i cerAty1.NW_012002711v1   C 0 I 12
s manLeu1.NW_012099233v1     125682 13 +    290775 TTTTTCAA--CCCTG
i manLeu1.NW_012099233v1   C 0 I 12
s colAng1.NW_012115566v1    2580220 15 -   3067355 TTTTTCAAAGCCATG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            93463 15 -    242197 TTTTTCAAAGCTATT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1      56982 15 -   1771730 TTTTTCAAAGCTATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     141813 15 -    457564 TTTTGCAAAACTATG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     566824 15 +    730504 TTCTTCAAAGGCGTG
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57806727  7 -  94987271 GTTTTCA--------
i mm10.chr17               C 0 C 0
e otoGar3.GL873550            14117 2192 +  18854210 I
e chlSab2.chr17            28949383 25 -  71996105 I

a score=1615190.000000
s hg38.chr6_GL000254v2_alt   837793 178 +   4827813 AGACTACTCTTTCTTCCAGCCCATAAGCTCCTCCGCCTTGAA-TGACCACATTGTTCAATAATTTGAAGTAGACTCCTTACTTCAGTGACTTAG-GATAGGCTactaaagaggataaagtcagacctgacatctaagtacaatatgtgactctcaactggatcctacgtg-g----aaaaaaaaa
s panTro5.chr6             29800532 179 + 175400573 AGACTACTCTTTCTTCCAGCCCATAAGCTCCTCTGCCTTGAA-TGACCACATTGTTCAATAATTTGAAGTAGACTCCTTACTTCAGTGACTTAG-GATAGGCTactaaagaggataaagtcagacctgacatctaagtacaatatgtgactctcaactggatcctacgtg-g---aaaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30035166 179 + 173848474 AGACTACTCTTTCTTCCAGCCCATAAGCTCCTCTGCCTTGAA-TGACCACATTGTTCAATAATTTGAAGTAGACTCCTTACTTCAGTGACTTAG-GATAGGCTactaaagaggataaagtcagacctgacatctaagtacaatatgtgactctcaactggatcctacgtg-g---aaaaaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5838548 179 +   6154872 AGACTACTCTTTCTTCCAGCCCATAAGCTCCTCTGCCTTGAA-TGACCACATTGTTCAATAATTTGAAGTAGAGTCCTTACTTCAGTGACTTAG-GATAGGCTactaaagaggataaagtcagacctgacatctaagtacaatatgtgactctcaactggatcctacgtg-g---aaaaaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74565041 181 + 122973662 AGACTACTCTTTCTTCCAGCCCATAAGCTCCTCCACCTTGAA-TGACCACATTGTTCAATAATTTGAAGTAAACTCCTTACTTCAGTGACTTAG-GATAGGCTactaaagaggacaaagtcagacctgacatctaagtacaatatgtgactctcaactggatcctacgtg-a-aaaaaaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30032143 180 + 172585720 AGACTACTCTTTCTTCCAGGCCATAAGCCCCTCAACCTTGAA-TGACCACATTGTTCAGTAATTTGAAGTAGACTCCTTAGTTCAGTgactgag-gataggctactaaagaggac--agtcagacctgacatctaagtacaatatgtgactctcgactggatcctatgtg-aaaaaaaataaata
i rheMac8.chr4             I 12 C 0
s macFas5.chr4             29694592 180 - 170955103 AGACTACTCTTTCTTCCAGGCCATAAGCCCCTCAACCTTGAA-TGACCACATTGTTCAGTAATTTGAAGTAGACTCCTTAGTTCAGTGACTGAG-GATAGGCTactaaagaggac--agtcagacctgacatctaagtacaatatgtgactctcgactggatcctatgtg-aaaaaaaataaata
i macFas5.chr4             I 12 C 0
s macNem1.NW_012011356v1    2740741 180 -   2996164 AGACTACTCTTTCTTCCAGGCCATAAGCCCCTCAACCTTGAA-TGACCACATTGTTCAATAATTTGAAGTAGACTCCTTAGTTCAGTGACTTAG-GATAGGCTactaaagaggac--agtcagacctgacatctaagtacaatatgtgactctcgactggatcctatgtg-aaaaaaaataaata
i macNem1.NW_012011356v1   I 12 C 0
s cerAty1.NW_012002711v1     492444 179 +    766320 AGACGACTCTTTCTTCCA-GCCAATAGCCCCTCAACCTTGAA-TGACCACATTGTTCAATAATTTGAAGTAGACTCCTTAGTTCAGTGACTTAG-GATAGGCTactaaagaggac--agtcagacctgacatctaagtacaatatgtgactctcaactggatcctatgtg-aaaaaaaataaata
i cerAty1.NW_012002711v1   I 12 C 0
s chlSab2.chr17            28949408 180 -  71996105 AGACTACTCTTTCTTCCAGCCCATAAGCTCCTCGACCTTGAA-TGACCACATTGTTCAGTAATTTGAAGTAGACTCCTTAGTTCAGTGACCTAG-GATAGGCTactaaagaggac--agtcagacctgacatctaagtacaatatgtgactctcaactggatcctatgtg-aaaaaaaataaata
i chlSab2.chr17            I 25 C 0
s manLeu1.NW_012099233v1     125707 179 +    290775 AGACGACTCTTTCTTCCAGCCAAT-AGCCCCTCAACCTTGAA-TGACCACATTGTTCAATAATTTGAAGTAGACTCCTTAGTTCAGTGACTTAG-GATAGGCTactaaagaggac--agtcagacctgacatctaagtacaatatgtgactctcaactggatcctatgtg-aaaaaaaataaata
i manLeu1.NW_012099233v1   I 12 C 0
s colAng1.NW_012115566v1    2580235 181 -   3067355 AGACTACTCTTTCTTCCAGCCCATAAGCTCCTCAACCTTGAA-TGACCACATTGTTCAATAATTTGAAGTAGGCTCCTTAGTTCAGTGACTTAG-GATAGGCTactaaagaggac--agtcagacctgacatctaagtacaatatgtgactctcaactggatcctacgtgaaaaaaaaataaata
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357            93478 174 -    242197 AGACCA----TTCTTCCATCCCATAAGCTCCTCTACCTTAAA-TGACCACATTGTTCAATAATTTGAAGTAAATTATTTAGTTCAGTGACTTAG-GATAAGCTATGAAAGAGGACAAAATCAGACCTGACATCTAAGTACAATGTGTGACTCTCAACTGAATCTTACATG-AAAAAAgaaa----
i saiBol1.JH378357         C 0 I 92278
s cebCap1.NW_016107755v1      56997 174 -   1771730 AGAACA----TTCTTCCAGCCCATAAGCCCCTCCACCTTAAA-TGACCACACTGTTCAATAATTTGAAGTAGACTCCTTAGTTCAGTGACTCAG-GATAAGCTATGAAAGAGGACAAAATGAGACCTGACATCTAAGTACAATGTGTGACTCTCAACTGAATCCCACATG-AAAAAAgaaa----
i cebCap1.NW_016107755v1   C 0 N 0
s aotNan1.NW_018509740v1     141828 174 -    457564 AGACCA----CTCGTCCAGCCCATAAGCCCTTCCACCTTAAA-TGACTGCATTGTTCAATAATTTGAAGTAGACTCCTCAGTTCAGTGACTTAG-GATAGGCTATGAAAGAGAACAAAATCAGACCTGACATCTAAGTACAATGTGTGACTCTCAGCTGAATCCTACATG-AAAAAAgaaa----
i aotNan1.NW_018509740v1   C 0 N 0
s proCoq1.NW_012152574v1     566839 179 +    730504 ACACCACTCTTTCCTCTAGCCTATTAGCTCCTCTGCCATGGACTGGCCACATTGTCCAATATTTTGAAGTAGAACCCTTAGTTCAGTGGCCTAGAAATAGGCTactaaaaaggacagagccagacccagcacctaagtacaatatgtgaatctcgactggatcctgtgtg-acagaagac-----
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57806734 164 -  94987271 AGACCACTCACCTTTCCAACCTTTGAGTTCTGCCACATGGTC-TGTTCACATTGCCAAATA-TTCAAAACAGATCCCTTAGCCTGGTGCCTTAG-------CCACTAGAGAAAATGGGGACAGAAAGGAGAACTGCACATAGTATGTCAGTTTTCACTGGATCCTAGGCA-AAA-----------
i mm10.chr17               C 0 C 0
e otoGar3.GL873550            14117 2192 +  18854210 I

a score=998861.000000
s hg38.chr6_GL000254v2_alt   837971 161 +   4827813 ---aatcctacaaagaacattattgggac-atagagaaaataagaatatggactgtgtgttaca--------taacaatactgtatcaattttaagtttattgaatttaattgctgtacagtgttaatt---aagatcatcttgttgtagaatatgaatactaagacaataaggag
s panTro5.chr6             29800711 161 + 175400573 ---aatcctacaaagaacattattgggac-atagagaaaataagaatatggactgtgtgttaca--------taacaatactgtatcaattttaagtttattgaatttaattgctgtacagtgttaatt---aagatcatcttgttgaagaaaatgaatactaagacaataaggag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30035345 161 + 173848474 ---aatcctacaaagaacattattgggac-atagagaaaataagaatatggactgtgtgttaca--------taacaatactgtatcaattttaagtttattgaatttaattgctgtacagtgttaatt---aagatcatcttgttgaagaaaatgaatactaagacaataaggag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5838727 161 +   6154872 ---aatcctacaaagaacattattgggac-atagagaaaataagaatatggactgtgtgttaca--------taacaatactgtatcaattttaagtttattgaatttaattgctgtacagtgttaatt---aagatcatcttgttgaagaaaatgaatactaagacaataaggag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74565222 161 + 122973662 ---aatcctacaaagaacattattgggcc-atagagaaaataagaatatggactgtatgttata--------taacaatactgtatcaattttaagtttattgaatttaattgctgtacagtgttaatt---aagatcatcttgttgtagaaaacgaatactaagacaataaggag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30032323 166 + 172585720 ---aatactacaaagaatattattgggac-atagagaaaataggaatatggaatgtatgttataacaatatataacaatactgtatcaattttaagtttattgaatttaattgctgaatagtgttaatt---aagatcatcttgt---agaaaatgcatactaagacaataaggag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29694772 166 - 170955103 ---aatactacaaagaatattattgggac-atagagaaaataggaatatggaatgtatgttataacaatatataacaatactgtatcaattttaagtttattgaatttaattgctgaatagtgttaatt---aagatcatcttgt---agaaaatgcatactaagacaataaggag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2740921 166 -   2996164 ---aatactacaaagaatattattgggac-atagagaaaataggaatatggaatgtatgttataacaatatataacaatactgtatcaattttaagtttattgaatttaattgttgaatagtgttaatt---aagatcatcttgt---agaaaatgcatactaagacaataaggag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     492623 166 +    766320 ---aatactacaaagaatattattgggac-atagagaaaataggaatatggaatgtatgttataacaatatataacaatactgtatcaattttaagtttattgaatttaattgctgaatagtgttaatt---aagatcatcttgt---agaaaatgcatactaagacaataaggag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28949588 166 -  71996105 ---aatactacaaagaatattattgggac-atagagaaaataggaatatggaatgtatgttataacaatatgtaacaatactgtctcaattttaagtttattgaatttaattgctgaatagtgttaatt---aagatcatcttgt---agaaaatgcatactaagacaataaggag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     125886 166 +    290775 ---aatactacaaagaatattattgggac-atagagaaaacaggaatatggaatgtatgttataacaatatataacaatactgtatcaattttaagtttattgaatttaattgctgaatagtgttaatt---aagatcatcttgt---agaaaatgcatactaagacaataaggag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2580416 166 -   3067355 ---aatactacaaagaatattattgggac-atagagaaaataagaatatagaatgtatgttataacaatatataacaatactgtatcaattttaagtttattgaatttaatagctgaatagtgttaatt---aagatcatcttgt---aaaaaatgcatactaagacaataaggag
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     567018 162 +    730504 ---attccaacaaagaacatcactgggacaattgacaaaataggaatatggactgtatgttaag--------taatagcactgtatcaattgtaagtttctagaatctgattactttacagtgttaatttaagaaatcaccttgt---agcaaatgcatactgaaatattcaggag
i proCoq1.NW_012152574v1   C 0 I 78
s mm10.chr17               57806898 130 -  94987271 TGTCATACT------TGCCTTACTGGGAC-A---ACAAATTAGGAATCTGGCCTGTATATTAGA--------CAATAGTAATTGATCATTT-----------AAATTCAATTGCTGCATAGA----------TAGACAATTTTGT---AGATAAT-CATACTGAAATATGAAG---
i mm10.chr17               C 0 C 0
e saiBol1.JH378357            93652 92278 -    242197 I
e otoGar3.GL873550            14117 2192 +  18854210 I

a score=487821.000000
s hg38.chr6_GL000254v2_alt   838132 78 +   4827813 aaagaggcatga---tgtccacaagttattcccaagtgactcagagtaaaaatgaaaatacataaacatattgagtataat
s panTro5.chr6             29800872 78 + 175400573 aaagaggcatga---tgtccacaagttattcccaagtgactcagagtaaaaatgaaaatacataaacatattgagtataat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30035506 78 + 173848474 aaagaggcatga---tgtccacaagttattcccaagtgactcagagtaaaaatgaaaatacataaacatattgagtataat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5838888 78 +   6154872 aaagaggcatga---tgtccacaagttattcccaagtgactcagagtaaaaatgaaaatacataaacatattgagtataat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74565383 78 + 122973662 aaagaggcatga---tgtccacaagttattcccaagtgactcagagtaaaaatgataatacataaacatattgagcacaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30032489 78 + 172585720 aaagaggcatga---tgtccacaagttattcccaagtgactcagagtaaaaatgatgatacataaacatattgagcataat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29694938 78 - 170955103 aaagaggcatga---tgtccacaagttattcccaagtgactcagagtaaaaatgatgatacataaacatattgagcataat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2741087 78 -   2996164 aaagaggcatga---tgtccacaagttattcccaagtgactcagagtaaaaatgatgatacataaacatattgagcataat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     492789 78 +    766320 aaagaggcatga---tgtccacaagttattcccaagtgattcagagtaaaaatgatgatacataaacatattgagcataat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28949754 78 -  71996105 aaagaggcatga---tgtccacaagttattcccaagtgactcagagtaaaaatgatgatacataaacatattgagcataat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     126052 78 +    290775 aaagaggcatga---tgtccacaagttattcccaagtgactcagagtaaaaatgatgatacataaacatattgagcataat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2580582 78 -   3067355 aaagaggcatga---tgtccacaagttattcccaagtgactcagagtaaaaatgatgatacataaacatattgagcataat
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57807028 71 -  94987271 -------CATGACAGTATGAGCAGCCTTTTCCCAAATAATGCTGAATAAAAAT---AATATATAAACACATCAAGAAAAAT
i mm10.chr17               C 0 I 8730
e proCoq1.NW_012152574v1     567180 78 +    730504 I
e saiBol1.JH378357            93652 92278 -    242197 I
e otoGar3.GL873550            14117 2192 +  18854210 I

a score=1464091.000000
s hg38.chr6_GL000254v2_alt   838210 231 +   4827813 gatagtgaaaatgagtaaaaatactaaaaattgatgaat-ttgataaaggttatatagaagttcttggaactacacttgcaacttttctgtaagtttcaacttatttcaaaatcaaaggtttttaaTTGCATGTGAATAAAATTAACCGAGTATTTT-CAAAAGCAAAATTCTACTTACATGTCCCAAACTCAACATGGTATGTTTTTACTACTATATTTTATCTTACATGAA
s panTro5.chr6             29800950 222 + 175400573 gatagtgaaaatgagtaaaaatactaaaaattgatgaat-ttgataaaggttatatagaagttcttggaactacacttacaacttttctgtaagttttaacttatttcaaaatcaaaggtttttaaTTGCATGTGAATAAAATTAACCGAGCATTTT-CAAAAGCAAAATTCTACTTACATGTCCCAAACTCAACATGGTATGTTTTTACTACTATATTTTATC---------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30035584 222 + 173848474 gatagtgaaaatgagtaaaaatactaaaaattgatgaat-ttgataaaggttatatagaagttcttggaactacacttacaacttttctgtaagttttaacttatttcaaaatcaaaggtttttaaTTGCATGTGAATAAAATTAACCGAGCATTTT-CAAAAGCAAAATTCTACTTACATGTCCCAAACTCAACATGGTATGTTTTTACTACTATATTTTATC---------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5838966 231 +   6154872 gatagtgaaaatgagtaaaaatactaaaaattgatgaat-ttgataaaggttatatagaagttcttggaactacacttgcaacttttctgtaagtttcaacttatttcaaaatcaaaggtttttaaTTGCATGTGAATAAAATTAACCAAGCATTTT-CAAAAGCAAAATTCTACTTACATGTCCCAAACTCAACATGGTATGTTTTTACTACTATATTTTATCTTACATGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74565461 231 + 122973662 gatagtgaaaatgagtaaaaacactaaaaattgatgaat-ttgataaaggttatatggaagttcttggaactacacttgtaacttttctgtaagtttcaacttatttcaaaatcaaaggtttttaaCTTCATGTGAATAAAATTAACCGAGCATTTT-CAAAAGCAAAATTCTACTTACATGTCCCAAACTCAACATGGTATGTTTTTACTACTATATTTTATCTTACATGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30032567 230 + 172585720 gatagtgaaaatgagtaaaaatactaaaaattgatgcat-ttgataaaggttatgtagaagttcttggaactacacttgcaacttttctctaagtttcgacttatttcaaaatcaaacgtttttaaTTGCATGTGAATAAAATTAACCAAGCATTGT-CAAAA-CAAAATTTTATTTACATGTCCCAAACTCAACATGGTATGTTTTTACTACTATATTTTATCTTACATGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29695016 230 - 170955103 gatagtgaaaatgagtaaaaatactaaaaattgatgcat-ttgataaaggttatgtagaagttcttggaactacacttgcaacttttctctaagtttcgacttatttcaaaatcaaaCGTTTTTAATTGCATGTGAATAAAATTAACCAAGCATTGT-CAAAA-CAAAATTTTATTTACATGTCCCAAACTCAACATGGTATGTTTTTACTACTATATTTTATCTTACATGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2741165 230 -   2996164 gatagtgaaaatgagtaaaaatactaaaaattgatgcat-ttgataaaggttatgtagaagttcttggaactacacttgcaacttttctctaagtttcgacttatttcaaaatcaaacgtttttaaTTGCATGTGAATAAAATTAACCAAGCATTGT-CAAAA-CAAAATTTTATTTACATGTCCCAAACTCAACATGGTATGTTTTTACTACTATATTTTATCTTACATGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     492867 230 +    766320 gatagtgaaaatgagtaaaaatactaaaaattgatgcat-ttgataaaggttatgtagaagttcttggaactacacttgcaacttttctctaagtttcgacttatttcaaaatcaaacgtttttaaTTGCATGTGAATAAAATTAACCAAGCATTGT-CAAAA-CAAAGTTTTATTTACATGTCCCAAACTCAATATGGTATGTTTTTACTACTATATTTTATCTTACATGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28949832 230 -  71996105 gatagtgaaaatgagtaaaaatactaaaaattgatgcat-ttgataaaggttatgtagaagttcttggaactacacttgcaacttttctctaagtttcgacttatttcaaaatcaaaCGTTTTTAACTGCATGTGAATAAAATTAACCAAGCATTGT-CAAAA-CAAAATTTTATTTACATGTCCCAAACTCAACATGGTATGTTTTTACTACTACATTTTATCTTACATGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     126130 230 +    290775 gatagtgaaaatgagtaaaaatactaaaaattgatgcat-ttgataaaggttatgtagaagttcttggaactacacttgcaacttttctctaagtttcgacttatttcaaaatcaaacgtttttaaTTGCATGTGAATAAAATTAACCAAGCATTGT-CAAAA-CAAAGTTTTATTTACATGTCCCAAACTCAACATGGTATGTTTTTACTACTATATTTTATCTTACATGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2580660 230 -   3067355 gatagtgaaaatgagtaaaaatactaaaaattgatgcat-ttgataaaggttatgtagaagttcttggaactacacttgcaacttttctgtaagttttgacttatttcaaaatcaaacgtttttaaTCGCATGTGAATAAAATTAACCAAGCATTGT-CAAAA-CAAAATTCTATTTACATGTCCCAAACTCAATACGGTATGTTTTTACTAGTATATTTTATCTTACATGAA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     567258 233 +    730504 gattgtgtaaatgagcaaaaatgctaaaaattgatgaatcttgataaaggttttataggagtccttggaactactcttgcaatttttctggaagcttgaacttacttcaaaataaaaaGGTTTTAATTGCATATAAATGAAATTAACCAAGCACTATACAAAACTAAAACTCCACTTAAATGTCCCAGACTCAACATGGTGTACTTTTACTACTAAATTTCATCTTATATGAA
i proCoq1.NW_012152574v1   I 78 I 61
e mm10.chr17               57807099 8730 -  94987271 I
e saiBol1.JH378357            93652 92278 -    242197 I
e otoGar3.GL873550            14117 2192 +  18854210 I

a score=350002.000000
s hg38.chr6_GL000254v2_alt   838441 61 +   4827813 AAGGAGAGGATATTGAAATCTATTTCAGCTTTCTATCACCAAACATCAATTCTTCAGGATT
s panTro5.chr6             29801172 56 + 175400573 -----GAGGATATTGAAATCTATTTCAGCTTTCTATCACCAAACATCAATTCTTCAGGATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30035806 56 + 173848474 -----GAGGATATTGAAATCTATTTCAGCTTTCTATCACCAAACATCAATTCTTCAGGATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5839197 61 +   6154872 AAGGAGAGGATATTGAAATCTATTTCAGCTTTCTATCACCAAACATCAATTCTTCAGGATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74565692 61 + 122973662 AAGGAGAGGATATTGAAATCTATTTCAGCTTTCTATCACCAAACATCAATTCTTCAGGATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30032797 61 + 172585720 AAGGAGAGGATATTGAAATCTATTTCAGCTTTCTATCGCCAAACATCAGTTCTTCAGGATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29695246 61 - 170955103 AAGGAGAGGATATTGAAATCTATTTCAGCTTTCTATCGCCAAACATCAGTTCTTCAGGATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2741395 61 -   2996164 AAGGAGAGGATATTGAAATCTATTTCAGCTTTCTATCGCCAAACATCAGTTCTTCAGGATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     493097 61 +    766320 AAGGAGAGGATATTGAAATCTATTTCAGCTTTCGATCGCCAAACATCAGTTCTTCAGGATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28950062 61 -  71996105 AAGGAAAGGATATTGAAATCTATTTCAGCTTTCTATCGCCAAACATCAGTTCTTCAGGATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     126360 61 +    290775 AAGGAGAGGATATTGAAATCTATTTCAGCTTTTGATCGCCAAACATCAGTTCTTCAGGATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2580890 61 -   3067355 AAGGAGAGGATATTGAAATCTATTTCAGCTTTCTATCACCAAACATCAGTTCTTCAGGATT
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57807099 8730 -  94987271 I
e proCoq1.NW_012152574v1     567491 61 +    730504 I
e saiBol1.JH378357            93652 92278 -    242197 I
e otoGar3.GL873550            14117 2192 +  18854210 I

a score=94713.000000
s hg38.chr6_GL000254v2_alt   838502 15 +   4827813 TTTTTGCAGTTACAG
s panTro5.chr6             29801228 15 + 175400573 TTTTTGCAGTTATAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30035862 15 + 173848474 TTTTTGCAGTTATAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5839258 15 +   6154872 TTTTTGCAGTTATAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74565753 15 + 122973662 TTTTTGCAGTTATAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30032858 15 + 172585720 TTTTTGCATTTATAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29695307 15 - 170955103 TTTTTGCATTTATAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2741456 15 -   2996164 TTTTTGCATTTATAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     493158 15 +    766320 TTTTTGCATTTATAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28950123 15 -  71996105 TTTTTGCATTTATAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     126421 15 +    290775 TTTTTGCATTTATAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2580951 15 -   3067355 TGTTTGCATTTATAG
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     567552 15 +    730504 TTTTTGCAGTTGTAG
i proCoq1.NW_012152574v1   I 61 C 0
e mm10.chr17               57807099 8730 -  94987271 I
e saiBol1.JH378357            93652 92278 -    242197 I
e otoGar3.GL873550            14117 2192 +  18854210 I

a score=450476.000000
s hg38.chr6_GL000254v2_alt   838517 69 +   4827813 AACCAGAAAATAATCTTTC--TGACTGACATTATATTTTTTCTTATTTT-TACATATTACACATAATGGAAA
s panTro5.chr6             29801243 69 + 175400573 AACCAGAAAATAATCTTTC--TGACTGACATTATATTTTTTCTTATTTT-TACATATTACACATAACGGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30035877 69 + 173848474 AACCAGAAAATAATCTTTC--TGACTGACATTATATTTTTTCTTATTTT-TACATATTACACATAACGGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5839273 68 +   6154872 AACCAGAAAATAATCTTTC--TGACTGACATTATA-TTTTTCTTATTTT-TACATATTACACATAACAGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74565768 69 + 122973662 AACCAGAAAATAATCTTTC--TAACTGACATTATATTTTTTCTTATTTT-TATATATCACACATAATGGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30032873 69 + 172585720 AACCAGAAAATAATCTTTC--TGACTGACATTATATTTTTTCTTATTTT-TACATATTACACATAATGGAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29695322 69 - 170955103 AACCAGAAAATAATCTTTC--TGACTGACATTATATTTTTTCTTATTTT-TACATATTACACATAATGGAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2741471 69 -   2996164 AACCAGAAAATAATCTTTC--TGACTGACATTATATTTTTTCTTATTTT-TACATATTACACATAATGGAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     493173 69 +    766320 AACCAGAAAATAATCTTTC--TGACTGACATTATATTTTTCCTTATTTT-TACATATTACACATAATGGAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28950138 69 -  71996105 AACCAGAAAATAATCTTTC--TGACTGACATTATATTTTTCCTTATTTT-TACATATTACACATAATGGAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     126436 69 +    290775 AACCAGAAAATAATCTTTC--TGACTGACATTATATTTTTCCTTATTTT-TACATATTACACATAATGGAAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2580966 69 -   3067355 AACCAGAAAATAATCTTTC--TGACTGACATTATATTTTTTCTTATTTT-TACATATTACACATAATGGAAA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     567567 70 +    730504 AACCAGAGAATAATCATTCTATGACTGACGCTATG-CTTTTCTTATTTT-TCCACATTACACATAATGGAAA
i proCoq1.NW_012152574v1   C 0 I 476
s mm10.chr17               57815829 64 -  94987271 aaccggtgagccatctctc--cagccTGTGTT-TAGCTCTTCTTATTCCATATTTGTAAGATAAAAT-----
i mm10.chr17               I 8730 C 0
e saiBol1.JH378357            93652 92278 -    242197 I
e otoGar3.GL873550            14117 2192 +  18854210 I

a score=744484.000000
s hg38.chr6_GL000254v2_alt   838586 131 +   4827813 ATTTAGGCAGGACATTTCAT-TTGCAGGAGAAATGTTTGTTCTTAGTTTAATAAG--TCATAATTTTTTTTGAAAGA-----------CCTAAATCACC----------------------------------------TGACTGATCTTTCTAGCAGTTGAGTCATTTCACATACAGAAGAAAT
s panTro5.chr6             29801312 131 + 175400573 ATTTAGGCAGGACATTTCAT-TTGCAGGAGAAATGTTTGTTCTTAGTTTAATAAG--TCATAATTTTTTTTGAAAGA-----------CCTAAATCACC----------------------------------------TGACTGATCTTTCTAGCAGTTGAGTCATTTCACATACAGAAGAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30035946 131 + 173848474 ATTTAGGCAGGACATTTCAT-TTGCAGGAGAAATGTTTGTTCTTAGTTTAATAAG--TCATAATTTTTTTTGAAAGA-----------CCTAAATCACC----------------------------------------TGACTGATCTTTCTAGCAGTTGAGTCATTTCACATACAGAAGAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5839341 131 +   6154872 ATTTAGGCAGGACATTTCAT-TTGCAGGAGAAATGTTTGTTCTTAGTTTAATAAG--TCATAATTTTTTTTGAAAGA-----------CCTAAATCACC----------------------------------------AGACTGATCTTTCTAGCAGTTGAGTCATTTCACATACAGAAGAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74565837 131 + 122973662 ATTTAGGCAGGACATTTCAT-TTGCAGGAGAAATGTTTGTTCTTAGTTTAATAAG--TCATAATTTTTTCTGAAAGA-----------CCTAAATCACC----------------------------------------TGACTGATCTTTCTAGCGGTTGAGTCATTTCACATACAGAAGAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30032942 130 + 172585720 ATTTAGGTAGGACGTTTCAT-TTGCAGAAGAAATGTTTGTTCTTAGTTTAATAAG--TCGTCATTTTTT-TGCAAGA-----------CCTAAATCACC----------------------------------------AGACTGATCTTTCCAGCGGTTGAGTCATTTCACATACAGAAGAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29695391 130 - 170955103 ATTTAGGTAGGACGTTTCAT-TTGCAGAAGAAATGTTTGTTCTTAGTTTAATAAG--TCATCATTTTTT-TGCAAGA-----------CCTAAATCACC----------------------------------------AGACTGATCTTTCTAGCGGTTGAGTCATTTCACATACAGAAGAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2741540 130 -   2996164 ATTTAGGTAGGACGTTTCAT-TTGCAGAAGAAATGTTTGTTCTTAGTTTAATAAG--TCATCATTTTTT-TGCAAGA-----------CCTAAATCACC----------------------------------------AGACTGATCTTTCTAGCGGTTGAGTCATTTCACATACAGAAGAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     493242 130 +    766320 ATTTAGGTAGGACATTTCAT-TTGCAGAAGAAATATTTGTTCTTAGTTTAATAAG--TCATAATTTTTT-TGCAAGA-----------CCTAAATCACC----------------------------------------AGACTGATCTTTCCAGCGGTTGAGTCATTTCACATACAGAAGAAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28950207 130 -  71996105 ATTTAGGTAGGACGTTTCAC-TTGCAGAAGAAATATTTGTTCTTAGTTTAATAAG--TCATAATTTTTT-TGCAAGA-----------CCTAAATCACC----------------------------------------AGACTGATCTTTCTAGCGGTTGAGTCATTTCACATACAGAAGAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     126505 130 +    290775 ATTTAGGTAGGACATTTCAT-TTGCAGAAGAAATATTTGTTCTTAGTTTAATAAG--TCATAATTTTTT-TGCAAGA-----------CCTAAATCACC----------------------------------------AGACTGATCTTTCCAGCGGTTGAGTCATTTCACGTACAGAAGAAAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2581035 130 -   3067355 ATTTAGATAGGATGTTTCAT-TTGCAGAAGAAATGTTTGTTCTTAGTTTAATAAG--TCATCATTTTTT-TGCAAGA-----------CCTAAATCACC----------------------------------------AGACTGATCTTTCTAGCGGTTGAGTCATTTCACATACAGAAGAAAT
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57815893 183 -  94987271 GTTGAGGACAGAGCTTTCAGAATGAAGACAAGGCATTTGCTTTTTCTTTAGTAAGCATGATGACTGTTT-TTAAAGAGTGAGCTCTACACAAAAGCACCCTGAATGTTCCTACAATTTCTGATAAAGAATACAATAGGTTAACTGATCTCTCTGGAAATTTAATTATTTCATGTAGGGGAAAAT-
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     567637 476 +    730504 I
e saiBol1.JH378357            93652 92278 -    242197 I
e otoGar3.GL873550            14117 2192 +  18854210 I

a score=274349.000000
s hg38.chr6_GL000254v2_alt   838717 37 +   4827813 ---CTCCACAGTCCACATTTCTATCACTGGTCAAATCTCT
s panTro5.chr6             29801443 37 + 175400573 ---CTCCACAGTCCACATTTCTATCACTGGTCAAATCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30036077 37 + 173848474 ---CTCCACAGTCCACATTTCTATCACTGGTCAAATCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5839472 37 +   6154872 ---CTCCACAGTCCACATTTCTATCACTGGTCAAATCTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74565968 37 + 122973662 ---CTCCACAGTCCACATTTCTATCACTGGTCAAATCTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30033072 37 + 172585720 ---CTCCACAGTCCACATTTCTATCACTGGTCAAATCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29695521 37 - 170955103 ---CTCCACAGTCCACATTTCTATCATTGGTCAAATCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2741670 37 -   2996164 ---CTCCACAGTCCACATTTCTATCATTGGTCAAATCTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     493372 37 +    766320 ---CTCCACAGTCCACATTTCTATCACTGGTCAAATCTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28950337 37 -  71996105 ---CTCCACAGTCCACATTTCTATCACTGGTCAAATCTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     126635 37 +    290775 ---CTCCACAGTCCACATTTCTATCACTGGTCAAATCTCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2581165 37 -   3067355 ---CTCCACAGTCCACATTTCTATCATTGGTCAAATCTCT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     568113 37 +    730504 ---CTCCACAGGCCACATTTCTATCACTGGTCAAATCCCT
i proCoq1.NW_012152574v1   I 476 C 0
s mm10.chr17               57816076 40 -  94987271 CTGACCCACAGGACAGACATCAGTCCATGAGTGAATCTCC
i mm10.chr17               C 0 C 0
e saiBol1.JH378357            93652 92278 -    242197 I
e otoGar3.GL873550            14117 2192 +  18854210 I

a score=1543156.000000
s hg38.chr6_GL000254v2_alt   838754 226 +   4827813 TGCAAAAGTGTAAAGTAGATAGAATGTGAATGATTTGAGAAAATTTATGCCCACCACTAGAAAACATGATGAATT-CTCTAGTAAT-GTTTACAATTAGGAAACTCACTGAACA-CACATTTCTTTGTATTTCCTTCCACACATAACAAAGGGAAAATTCAGTAGTAGCATAGCGATCAGAACATAATA-GGTACTTAATAAATTTTTGCAAAATTAATAAAAACTAACT
s panTro5.chr6             29801480 226 + 175400573 TGCAAAAGTGTAAAGTAGATAGAATGTGAATGATTTGAGAAAATTTATGCGCACCACTAGAAAACATGATGAATT-CTCTAGTAAT-GTTTACAATTAGGAAACTCACTGAACA-CACATTTCTTTGTATTTCCTTCCACACATAACAAAGGGAAAATTCAGTAGTAGCATAGCGATCAGAACATAATA-GGTACTTAATAAATTTTTGCAAAATTAATAAAAACTAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30036114 226 + 173848474 TGCAAAAGTGTAAAGTAGATAGAATGTGAATGATTTGAGAAAATTTATGCGCACCACTAGAAAACATGATGAATT-CTCTAGTAAT-GTTTACAATTAGGAAACTCACTGAACA-CACATTTCTTTGTATTTCCTTCCACACATAACAAAGGGAAAATTCAGTAGTAGCATAGTGATCAGAACATAATA-GGTACTTAATAAATTTTTGCAAAATTAATAAAAACTAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5839509 227 +   6154872 TGCAAAAGTGTAAAGTAGATAGAATGTGAATGATTTGAGAAAATTTATGCCCACCACTAGAAAACATGACGAATTCCTCTAGTAAT-GTTTACAATTAGGAAACTCACTGAACA-CACATTTCTTTGTATTTCCTTCCACACATAACAAAGGGAAAATTCAGTAGTAGCATAGCGATCAGAACATAATA-GGTACTTAATAAATTTTTGCAAAATCAATAAAAACTAACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74566005 226 + 122973662 TGCAAAAGTGTAAAGTAGATAGAATGTGAATGATTTGAGAAAATTTATGCCCACCACTAGAAAACATGATGAATT-CTCTAGTAAT-GTTTACAATCAGGAAACTCACTGAACA-CACATTTCTTTGTATTTCCTTCCACACATAACAAAGGGAAAATTCAGTAGTAGCATAGCGATCAGAACTTAATA-GGTACTTAATAAATTTTTGCAAAATTAATAGAAACTAACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30033109 225 + 172585720 TGCAAAAGTGTAAAGTAGATAGAATGTGAATGATTTGAGAAAATTTATGCCAACCACTAGAAAACATGATGAATT-CTCTAGTAAT-GTTTACAATCAGGAAACTCACTGAACA-CACATTTCTTTGTATTTCCTTCCACACATAACAAAGGGAAAATTCAGTAGTAGCATAGTGATTAGAACAT-ATA-GGTGCTTAATAAATTTTTTCAAAATTAATGAAAACTAACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29695558 225 - 170955103 TGCAAAAGTGTAAAGTAGATAGAATGTGAATGATTTGAGAAAATTTATGCCAACCACTAGAAAACATGATGAATT-CTCTAGTAAT-GTTTACAATCAGGAAACTCACTGAACA-CACATTTCTTTGTATTTCCTTCCACACATAACAAAGGGAAAATTCAGTAGTAGCATAGTGATTAGAACAT-ATA-GGTGCTTAATAAATTTTTTCAAAATTAATGAAAACTAACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2741707 225 -   2996164 TGCAAAAGTGTAAAGTAGATAGAATGTGAATGATTTGAGAAAATTTATGCCAAACACTAGAAAACATGATGAATT-CTCTAGTAAT-GTTGACAATCAGGAAACTCACTGAACA-CACATTTCTTTATATTTCCTTCTACACATAACAAAGGGAAAATTCAGTAGTAGCATAGTGATTAGAACAT-ATA-GGTGCTTAATAAATTTTTTCAAAATTAATGAAAACTAACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     493409 223 +    766320 TGCAAAAGTGTAAAGTAGATAGAATGTGAATGATTTGAGAAAATTTATGCCAACCACTAGAAAACATGATGAATT-CTCTAGTAAT-GTTTATAATCACGAAACTCACTAAACA-CACATTTCTTTGTATTTCCTTCCACACATAAC--AGGGAAAATTCAGTAGTAGCATAGTGATTAGACCAT-ATA-GGTGCTTAATAAATTTTTTCAAAATTAATGAAAACTAACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28950374 225 -  71996105 TGCAAAAGTGTAAAGTAGATAGAATGTGAATGATTTGAGAAAATTTATGCCAACCACTAGAAAACATGATGAATT-CTCTAGCAAT-GTTTACAATCAGGAAACTCACTGAACA-CACATTTCTTTGTATTTCCTTCCACACATAACAAAGGGAAAATTCAGTAGTAGCATAGTGATTAGAACAT-ATA-GGTGCTTAATAAATTTTTTCAAAATTAATGAAAACTAACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     126672 223 +    290775 TGCAAAAGTGTAAAGTAGATAGAATGTGAATGATTTGAGAAAATTTATGCCAACCACTAGAAAACATGATGAATT-CTCTAGTAAT-GTTTACAATCACGAAACTCACTAAACA-CACATTTCTTTGTATTTCCTTCCACACATAAC--AGGGAAAATTCAGTAGTAGCATAGTGATTAGAACAT-ATA-GGTGCTTAATAAATTTTTTCAAAATTAATGAAAACTAACT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2581202 225 -   3067355 TGCAAAAGTGTAAAGTAGATAGAACGTGAATGATTTGAGAAAATTTATGCCAACCACTAGAAAACGTGGTGAATT-CTCTAGTAAT-GTTTACAATCAGGAAACTCACTGAACA-TACATTTCTTTGTATTTCCTTCCACACATAACAAAGGGAAAATTCAGTAGTAGCATAGTGATTAGAACAT-ATA-GGTGCTTAATAAATTTTTTCAAAATTAATGAAAACTAACT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           185930 203 -    242197 TGAAAAAATACAAAATAAATCAAACGTAGA--GTTCTATAAAATTCAT-TCAACCAACAGAGCA-GTAATTGAGC-CTACAGAGACAATTTATCATCAGAAAATTTATTCAATA-TACA---CTATG-AGATCATCCAATAAATAAGCAAGAGACAACTc-----taaaacagcactcagaacat-aat-ggcactcagtaattttctgctgaattaat----------t
i saiBol1.JH378357         I 92278 C 0
s proCoq1.NW_012152574v1     568150 226 +    730504 TGCACAAGCATAAAGTAGATAGGATGTGAATGATTCCAGGAAATTCATGCCTACCACTAGAAAATAAGATCGATT-CGACAGTAAT-GTTTACAGTCAGGAAATTCACTCTATG-CATATTTCTTTGTAATTCCTTCCATACATAGCAAATGGAAAATTCAGTAAtagcatagtgctcagaacataaaa-agtgctcaataaatgtctgttgaattaatgaaAAGTAATT
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57816116 220 -  94987271 TGAAATAGTTTACCAAAGGCCAAATATGAGCCATCC--ACAAATCCATGTCTACACTTAGAAAATTAGACCAATG-CTACACTAAT-GTTTACCATCAAGTCATTGATCCAACCTCACAGTTGTTTATAACTGCTGGTACTCATAA---AGAACAAAGTCATTAG--ATTCAGTGTTCAAATTCT-ACATggtgctcaacaaatgtttgttgaaacaatgaaAACTAACT
i mm10.chr17               C 0 C 0
e otoGar3.GL873550            14117 2192 +  18854210 I

a score=176215.000000
s hg38.chr6_GL000254v2_alt   838980 25 +   4827813 AGTTAGCTGATCTATGCTTCACATC
s panTro5.chr6             29801706 25 + 175400573 AGTTAGCTGATCTATGCTTCACATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30036340 25 + 173848474 AGTTAGCTGAACTATGCTTCACATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5839736 25 +   6154872 AGTTAGCTGATCTATGCTTCACATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74566231 25 + 122973662 AGTTAGCTGATCTATGCTTCACATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30033334 25 + 172585720 AGTTAGCTGATCTATGGTTTACATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29695783 25 - 170955103 AGTTAGCTGATCTATGGTTTACATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2741932 25 -   2996164 AGTTAGCTGATCTATGGTTTACATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     493632 25 +    766320 AGTTAGCTGATCTGTGGTTTACATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28950599 25 -  71996105 AGTTAGCTGAGCTATAGTTTACATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     126895 25 +    290775 AGTTAGCTGATCTGTGGTTTACATC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2581427 25 -   3067355 AGTTAGCTGATTTATAGTTTATATC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           186133 25 -    242197 aatTAATTAATCTGTATTTTAAATC
i saiBol1.JH378357         C 0 C 0
s proCoq1.NW_012152574v1     568376 25 +    730504 AACTAGCTAATCCATGTTTTACATG
i proCoq1.NW_012152574v1   C 0 I 5
s otoGar3.GL873550            16309 21 +  18854210 ----AATGAATCCATATTTTATATC
i otoGar3.GL873550         I 2192 C 0
s mm10.chr17               57816336 25 -  94987271 GATCAATGAATTCATGTTATTCGTC
i mm10.chr17               C 0 C 0

a score=21559.000000
s hg38.chr6_GL000254v2_alt   839005 4 +   4827813 AGAC
s panTro5.chr6             29801731 4 + 175400573 AGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30036365 4 + 173848474 AGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5839761 4 +   6154872 AGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74566256 4 + 122973662 AGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30033359 4 + 172585720 AGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29695808 4 - 170955103 AGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2741957 4 -   2996164 AGCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     493657 4 +    766320 AGCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28950624 4 -  71996105 AGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     126920 4 +    290775 AGTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2581452 4 -   3067355 AGCC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           186158 4 -    242197 TGCC
i saiBol1.JH378357         C 0 C 0
s otoGar3.GL873550            16330 1 +  18854210 ---C
i otoGar3.GL873550         C 0 I 4
s mm10.chr17               57816361 4 -  94987271 AGCC
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     568401 5 +    730504 I

a score=81499.000000
s hg38.chr6_GL000254v2_alt   839009 13 +   4827813 G--TTTTGCATTCAA
s panTro5.chr6             29801735 13 + 175400573 G--TTTTGCATTCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30036369 13 + 173848474 G--TTTTGCATTCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5839765 13 +   6154872 G--TTTTGCATTCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74566260 13 + 122973662 A--TTTTGCATTCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30033363 13 + 172585720 G--TTTTGCATTCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29695812 13 - 170955103 G--TTTTGCATTCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2741961 13 -   2996164 G--TTTTGCATTCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     493661 13 +    766320 G--TTTTGCATTCAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28950628 13 -  71996105 G--TTTTGCATTCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     126924 13 +    290775 G--TTTTGCATTCAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2581456 13 -   3067355 A--TTTTGCATTCAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           186162 14 -    242197 TC-CTTTGCCCTCCC
i saiBol1.JH378357         C 0 C 0
s proCoq1.NW_012152574v1     568406 13 +    730504 -C-CTTTGTTCTCAA
i proCoq1.NW_012152574v1   I 5 C 0
s otoGar3.GL873550            16335 13 +  18854210 -T-CTTTGCTCTCAA
i otoGar3.GL873550         I 4 C 0
s mm10.chr17               57816365 14 -  94987271 -TCCTTTGCCCTCAG
i mm10.chr17               C 0 C 0

a score=2675.000000
s hg38.chr6_GL000254v2_alt   839022 1 +   4827813 -C
s panTro5.chr6             29801748 1 + 175400573 -C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30036382 1 + 173848474 -C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5839778 1 +   6154872 -C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74566273 1 + 122973662 -C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30033376 1 + 172585720 -C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29695825 1 - 170955103 -C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2741974 1 -   2996164 -C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     493674 1 +    766320 -C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28950641 1 -  71996105 -C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     126937 1 +    290775 -C
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2581469 1 -   3067355 -C
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           186176 1 -    242197 -C
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     178956 1 -   1771730 -C
i cebCap1.NW_016107755v1   N 0 C 0
s proCoq1.NW_012152574v1     568419 1 +    730504 -T
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            16348 1 +  18854210 -C
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57816379 1 -  94987271 G-
i mm10.chr17               C 0 C 0

a score=2170250.000000
s hg38.chr6_GL000254v2_alt   839023 219 +   4827813 CAGGAAGTCAGAGGCACCAGTGTGAGGCTCAATCCGTTGTTGAGCACATTAATGGTTTCCTCACTCCCACTAGACAATGTTTGATCAGAAGGAACAGGGGATGAGAAGGAGCTGCTTGATGGTGATGAGACTGGGAAAGGAACGCTGGGCGAGCAGAGACAAAAGAGAAACACTCACCTACTGGGACCTCACAAACACCCAGGCTGAGTTTTAATAAGA
s panTro5.chr6             29801749 219 + 175400573 CAGGAAGTCAGAGGCACCAGTGTGAGGCTCAATCCGTTGTTGAGCACATTAATGGTTTCCTCACTCCCACTAGACAATGTTTGATCAGAAGGAACAGGGGATGAGAAGGAGCTGCTTGATGGTGATGAGACTGGGAAAGGAACGCTGGGCGAGCAGAGACAGAAGAGAAACACTCACCTACTGGGACCTCACAAACACCCAGGCTGAGTTTTAATAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30036383 219 + 173848474 CAGGAAGTCAGAGGCACCAGTGTGAGGCTCAATCCGTTGTTGAGCACATTAATGGTTTCCTCACTCCCACTAGACAATGTTTGATCAGAAGGAACAGGGGATGAGAAGGAGCTGCTTGATGGTGATGAGACTGGGAAAGGAACGCTGGGCGAGCAGAGACAGAAGAGAAACACTCACCTACTGGGACCTCACAAACACCCAGGCTGAGTTTTAATAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5839779 219 +   6154872 CAGGAAGTCAGAGGCACCAGTGTGAGGCTCAATCCATTGTTGAGCACATTAATGGTTTCCTCACTCCCACTGGACAATGTTTGATCAGAAGGAACAGGGGATGAGAAGGAGCTGCTTGATGGTGATGAGACTGGGAAAGGAACGCTGGGCGAGCAGAGACAAAAGAGAAACACTCACCTACTGGGACCTCACAAACACCCAGGCTGAGTTTTAATAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74566274 219 + 122973662 CAGGAAGTCAGAGGCACCAGTGTGAGGCTCAATCCGTTGCTGAGCACATTAATGGTTTCCTCACTCCCACTAGACAATGTTTGATTAGAAGGAACAGGGGATGAAAAGGAGCTGCTGGATGGTGATGAGACTGGGAAAGGAAGGCTGGGCGAGCAGAGACAGAAGAGAAACACCCACCTACCGTGACCTCACAAACACCCAGGCTGAGTTTTAATAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30033377 203 + 172585720 CAGGAAGTCAGAGGCACCAGTGTGAGGCTCCATCCGTTGTCGAGCACATTAATGGTTTCCTCACTCCCACTAGACAATGTTTGATCAGAAGGAACAGGGGATGAGAAGGAGCTG----------------CTGGGAAAGGAAGGCTGGGTGAGCAGAGACGGAAGAGAAACACCCACCTACTGTGACATCACAAACACTCAGGCTGAGTTTTAATAAGA
i rheMac8.chr4             C 0 I 14286
s macFas5.chr4             29695826 203 - 170955103 CAGGAAGTCAGAGGCACCAGTGTGAGGTTCCATCCGTTGTCGAGCACATTAATGGTTTCCTCACTCCCACTAGACAATGTTTGATCAGAAGGAACAGGGGATGAGAAGGAGCTG----------------CTGGGAAAGGAAGGCTGGGTGAGCAGAGACAGAAGAGAAACACCCACCTACTGTGACATCACAAACACTCAGGCTGAGTTTTAATAAGA
i macFas5.chr4             C 0 I 14684
s macNem1.NW_012011356v1    2741975 219 -   2996164 CAGGAAGTCAGAGGCACCAGTGTGAGGCTCTATCCGTTGTCGAGCACATTAATGGTTTCCTCACTCCCACTAGACAATGTTTGATCAGAAGGAACAGGGGATGAGAAGGAGCTGCTGGATGGTGATGAGCCTGGGAAAGGAAGGCTGGGTGAGCAGAGACAGAAGAGAAACACCCACCTACTGTGACATCACAAACACTCAGGCTGAGTTTTAATAAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     493675 219 +    766320 CAGGAAGTCAGAGGCACCAGTGTGAGGCTCCATCCGTTGTCGAGCACATTAATAGTTTCCTCACTCCCACTAGACAATGTTTGATCAGAAGGAACAGGGAATGAGAAGGAGCTGCTGGATGGTGATGAGCCTGGGAAAGGAAGGCTGGGTGAACAGAGACAGAAGAGAAACACCCACCTACTGTGACATCACAAACACTCAGGCTGAGTTTTAATAAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28950642 219 -  71996105 CAGGAAGTCAGAGGCACCAGTGTGAGGCTCCATCCGTTGTCGAGCACATTAATGGTTTCCTCACTCCCACTAGACAATGCTTGTTCAGAAGGAACAGAGTATGAGAAGGAGCTGCTGGATGGTGATGAGCCTGGGAAAGGAAGGCTGGGTGAGCAGAGACAGAAGAGAAATACCCACCTACTGTGACATCACAAACACTCAGGCTGAGTTTTAATAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     126938 219 +    290775 CAGGAAGTCAGAGGCACCAGTGTGAGGCTCCATCCGTTGTCGAGCACATTAATGGTTTCCTCACTCCCACTAGACAATGTTTGATCAGAAGGAACAGGGAATGAGAAGGAGCTGCTGGATGGTGATGAGCCTGGGAAAGGAAGGCTGGGTGAGCAGAGACAGAAGAGAAACACCCACCTACTGTGACATCACAAACACTCAGGCTGAGTTTTAATAAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2581470 219 -   3067355 TAGGAAGTCAGAGGCACCAGTGTAAGGCTCCATCCGTTGTCGAGCACATTAATGGTTTCTTCACTCCCACTAGACAATGTTTGATCAGAAGGAACAGGGGATGAGAAGGAGCTGCTGGATGGTGATGAGCCTGGGAAAGGAAGGCTGGGTGAGCAGAGACAGAAGAGAAACACCCACCTACTGTGACAACACAAACACCCAGGCTGAGTTTTAATAAGA
i colAng1.NW_012115566v1   C 0 I 21268
s saiBol1.JH378357           186177 216 -    242197 CAGGAAGTCAGAGGCACCAGTGTGAGGCTCTATCTGCTGTCCAGTACATTCATGGTTTCCTCACTCTCACTGGACAATGTTTAACCCGGAAGAACAGAGAATGAGAAGGAGCTGCTGGATGGTGATCACCCTGGAAAAGGGAGGCTGGGAGAACAGAGACAGCAGAGAAACTCACATCCTCTGTAACCTCACAAACACCCAGGCTGAG---TAATAAGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     178957 214 -   1771730 CAGGAAGTCAGAGGTACCAGTGTGAGGCTCTATCTGCTGTCCAGTACCTTCATGGTTTCCTCACTCACACTGGACAATGTTTAACCAGGAAGAACAGAGAATGAGAAGGAGCTGATGGATGGTGATCACCCTGGAAAAGGGAGGCTGGGAGA--GGAGACAGAAGAGAAACTCACATCCTCTGTAACCTCACAAACACCCAGGCTGAG---TAATAAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     253602 214 -    457564 CAGGAAGTCACAGGCACCA--GTGAGGCTCTATCTGCTGTCCAGTACATTCATGGTTTCCTCACTCTCACTGGACAATGTTTAACCAGGAAGAACAGAGAGCGAGAAGGAGCTGCTGGATGGTGATCACCCTGGAAAAGGGAGGCTGGGAGAGCAGAGACAGAAGAGAAACTCACATCCGCTGTAACCTCACAAACACCCAGGCTGAG---TAATAAGA
i aotNan1.NW_018509740v1   N 0 C 0
s proCoq1.NW_012152574v1     568420 202 +    730504 CAGAAAGTCAGAGGTATCAGTGTGAGGCTCCATCTGCTTTCCAACACATTCATGGTTTCCTCATTCCCACTAGACAACGTTTGACCAGGAGGAACAGGGGAAGAAAAGGAGTGGCTGG--GAAAAAGAGGCTGGGAGAGCAG--------------AGGCAGAAGAGAAACATCCACCCGGTGTGACCTCACAAGCACCGGGG-TGCGTTGTGATAAAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            16349 209 +  18854210 CAGAAAGTCAGA-GTAGCAGCGTGAAGCTCCAT----TGCCCAGCACCTTTTTGGTTTCTTTGCTCCTAATAGACAAGATTTGACCAAGAGGAACAGAAGAAGAGCAGGAGCTGCAGGATGCTGATGATCCTGGGAAGGGAGC-CTGCATGGCT--AGACAGAAGAGAAATGTCCACCTGATGTAA-CTTATAAGCACCCAGG-TGAGTATTGATAGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57816380 188 -  94987271 TGGGAAGTGAGATGTGCCAGGGGAAGAATCCACCCATTTCCCAGGACTTTCCTGACTTCCTCTCAGCCAC--GAGAACATTTGACCAGAAGGAATAGGGAAAAGGAGGAAGC-----------------------------ACTCTTGGAGAGGAGAAGGAGAAGAGAAACATCCACCTCACATGTTTTGACAAGTATGTAGAGTGTGCTTTTACAAAA
i mm10.chr17               C 0 C 0

a score=15300.000000
s hg38.chr6_GL000254v2_alt   839242 1 +   4827813 C
s panTro5.chr6             29801968 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30036602 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5839998 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74566493 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30047866 1 + 172585720 C
i rheMac8.chr4             I 14286 C 0
s macFas5.chr4             29710713 1 - 170955103 C
i macFas5.chr4             I 14684 C 0
s macNem1.NW_012011356v1    2742194 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 I 14017
s cerAty1.NW_012002711v1     493894 1 +    766320 C
i cerAty1.NW_012002711v1   C 0 I 15720
s chlSab2.chr17            28950861 1 -  71996105 C
i chlSab2.chr17            C 0 I 14828
s manLeu1.NW_012099233v1     127157 1 +    290775 C
i manLeu1.NW_012099233v1   C 0 I 14266
s colAng1.NW_012115566v1    2602957 1 -   3067355 C
i colAng1.NW_012115566v1   I 21268 C 0
s saiBol1.JH378357           186393 1 -    242197 C
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     179171 1 -   1771730 C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     253816 1 -    457564 C
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     568622 1 +    730504 C
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            16558 1 +  18854210 C
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57816568 1 -  94987271 C
i mm10.chr17               C 0 C 0

a score=1989807.000000
s hg38.chr6_GL000254v2_alt   839243 173 +   4827813 -AGGTTGAATCACAC-TGGGGTGAC--AGCCTCATCCTTCCAGATACAGAGAGGAACAGGCCATGGTTAACCAAAGCTCCGCACCAGGCTTTCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTTGTAGTTGTCTTCACTTCCTACCTCCTAACCCCGGTGG
s panTro5.chr6             29801969 173 + 175400573 -AGGCTGAATCACAC-TGGGGTGAC--AGCCCCATCCTTCCAGATACAGACAGGAACAGGCCATGGTTAACCAAAGCTCCGCACCAGGCTTTCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTCGTGGTTGTCTTCACTTCCTACCTCCTAACCCTAGTGG
i panTro5.chr6             C 0 I 7
s panPan2.chr6             30036603 173 + 173848474 -AGGTTGAATCACAC-TGGGGTGAC--AGCCCCATCCTTCCAGATACAGACAGGAACAGGCCATGGTTAACCAAAGCTCCGCACCAGGCTTTCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTCGTGGTTGTCTTCACTTCCTACCTCCTAACCCTAGTGG
i panPan2.chr6             C 0 I 7
s gorGor5.CYUI01015250v1    5839999 173 +   6154872 -AGGTTGAATCACAC-TGGGGTGAC--AGCCTCATCCTTCCAGATACAGACAGGAACAGGCCATGGTTAACCAAAGCTCCGCACCAGGCTTTCTCCTTCTGGGCTTCTCGGAACACCCAGCACTGGAAAGGACTCTCTTCGTGGTTGTCTTCACTTCCTACCTCCTAACCCTAGTGG
i gorGor5.CYUI01015250v1   C 0 I 7
s nomLeu3.chr1a            74566494 173 + 122973662 -AGGTTGAATCACAC-TGGGGTGAC--AGCCTCATCCTTCCAGATACAGACAGGAACAGGCCATGGTTAACCAAAGCGCCACACCAGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGGGCTGGAAAGGACTCTTTTCATGGTTGTCTTCACTTCCTACCTCCTAACCCTAGTGG
i nomLeu3.chr1a            C 0 I 7
s rheMac8.chr4             30047867 173 + 172585720 -AAGTTGAATCACAC-TGGGGCGAC--AGCCTCATCCTTCCAGGTACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGGCTCTCTTTGTGGTTGTCTTCACTTCCTACCTCCTAACCCTGGTGG
i rheMac8.chr4             C 0 I 7
s macFas5.chr4             29710714 173 - 170955103 -AAGTTGAATCACAC-TGGGGCGAC--AGCCTCATCCTTCCAGGTACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTTGTGGTTGTCTTCACTTCCTACCTCCTAACCCTGGTGG
i macFas5.chr4             C 0 I 7
s macNem1.NW_012011356v1    2756212 173 -   2996164 -AAGTTGAATCACAC-TGGGGCGAC--AGCCTCATCCTTCCAGGTACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTTGTGGTTGTCTTCACTTCCTACCTCCTAACCCTGGTGG
i macNem1.NW_012011356v1   I 14017 I 7
s cerAty1.NW_012002711v1     509615 173 +    766320 -AAGTTGAATCACAC-TGGGGCGAC--AGCCTCATCCTTCCAGGTACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTTGTGGTTGTCTTCACTTCCTACCTCCTAACCCTGGTGG
i cerAty1.NW_012002711v1   I 15720 I 7
s chlSab2.chr17            28965690 173 -  71996105 -AAGTTGAATCACAC-TGGGGTGAC--AGCCTCATCCTTCCAGGTACAAACAAGAAAAGGTCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTTGTGGTTGTCTTCACTTCCTACCTCCTAACCCTGGTGG
i chlSab2.chr17            I 14828 I 7
s manLeu1.NW_012099233v1     141424 173 +    290775 -AAGTTGAATCACAC-TGGGGCGAC--AGCCTCATCCTTCCAGGTACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTTGTGGTTGTCTTCACTTCCTACCTCCTAACCCTGGTGG
i manLeu1.NW_012099233v1   I 14266 I 1233
s colAng1.NW_012115566v1    2602958 173 -   3067355 -AAGTTGAATCACAC-TGGGGTGAC--AGCCTCATCCTTCCAGGTACAAACAAGAAAAGACCATGGTTAACCAAAGCTCCCCCATGTGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTCATGGTTGTCTTCACTTCCTACCTCCTAACCCTGGTGG
i colAng1.NW_012115566v1   C 0 I 6
s saiBol1.JH378357           186394 173 -    242197 -AGTTTGAATCACAC-TGGGGTGAC--AGACTCATCTCTTCAGGTAAAAACAGAAATAGGCCATGATTAACCAAAGCTCTCCCGTGGGCTTCATCCTTCTGGGCTTCTATGAACACCCAGCCCTGGAAAGGATTCTCTTTGTGGTTGTCTTGACTTTCTACCTTTTGACCCCGGTGG
i saiBol1.JH378357         C 0 I 7
s cebCap1.NW_016107755v1     179172 175 -   1771730 -AGGTTGAATCACAC-TGGAGTGACAGAGACTCATCTCCCCAGGTACAAACAGAAACGGGCCATGATTAACCAAAGCTCTCCCGTGGGCTTCATCCTTCTGGGCTTCTATGAACACCCAGCACTGGAAAGGATTCTCTTTGTGGTTGTCTTGACTTTCTACCTTTTGACCCTGGTGG
i cebCap1.NW_016107755v1   C 0 I 7
s aotNan1.NW_018509740v1     253817 173 -    457564 -AGGTTGAATCACAC-TGGGGTGAC--AGACTCATCTCTCCAGGTAAAAACAGAAACAGGCCATGATTAACCAAAGCTCTCCCGTGGGCTTCATCCTTCTGGGCTTCTATGAACACCCAGCACTGGAAAGGATTCTCTTTGTGGTTGTCTTGACTTTCTACCTTTTGACCCTGGTGG
i aotNan1.NW_018509740v1   C 0 I 7
s proCoq1.NW_012152574v1     568623 173 +    730504 -ACATTGAATCACAC-TAGTCTGAC--AGCCTCATCCCTCCAGGTCTGGACAAGAACAGGACATGGGCAACCACAGCTCCCCAGAGGGCTTCCTCCTTCTGGGCTTCTCTCAACACCCAGGACTGGAAAAGATTCTCTTCCTGGTTGTCTTAACTTCCTACCTCCTGACCCTCGTGG
i proCoq1.NW_012152574v1   C 0 I 7
s otoGar3.GL873550            16559 173 +  18854210 -AGGTTGAATCACAC-TAGTCTAAC--AGGCTCATCCCTCCAGGTCCAGACAAAAACAGGCCATGGGCAACCAAAGCTCCCCAGAGGGCTTCCTTCTTCTGGGCTTCTCTGAACACCCAGGGCTGGAAAAGATTCTCTTCCTGGTTGTCTTAACTGCCTACCTCCTGACCCTGGTGG
i otoGar3.GL873550         C 0 I 7
s mm10.chr17               57816569 171 -  94987271 AAAGTAAAATAATACATTGTCTGAC--AGTCTCATCCTGCCGACTAGACACGG----AGATCATGGTCAACCAGAGCTCCCCTGTGGTCTTCTTCCTGCTGGGCTTCTCTGAACACCCACAACTGGAAAAGGTTCTGTTTGTGGTTGTCTTGTGCTCCTACCTCCTCACCCTCTTAG
i mm10.chr17               C 0 I 7

a score=2589348.000000
s hg38.chr6_GL000254v2_alt   839416 196 +   4827813 ACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGTTTCACCATAAGTTGTGTCCCCGGGATGCTGGTCAACCTCTGGGAGCCAAAGAAGACCATCATCTTACTGGGCTGCTCTGTCCAGTTCTTCATCTTCCTGTCCCTGGGG
s panTro5.chr6             29802149 196 + 175400573 ACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGTTTCACCATAAGTTGTGTCCCCTGGATGTTGGTCAACCTCTGGGAGCCAAAGAAGACCATCATCTTACTGGGCTGCTCTGTCCAGTTTTTCATCTTCCTGTCCCTGGGG
i panTro5.chr6             I 7 C 0
s panPan2.chr6             30036783 196 + 173848474 ACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGTTTCACCATAAGTTGTGTCCCCTGGATGTTGGTCAACCTCTGGGAGCCAAAGAAGACCATCATCTTACTGGGCTGCTCTGTCCAGTTTTTCATCTTCCTGTCCCTGGGG
i panPan2.chr6             I 7 C 0
s gorGor5.CYUI01015250v1    5840179 196 +   6154872 ACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGTTTCACCATAAGTTGTGTCCCCTGGATGCTGGTCAACCTCTGGGAGCCAAAGAAGACCATCATCTTACTGCACTGCTCTGTCCAGTTCTTCATCTTCCTGTCCCTGGGG
i gorGor5.CYUI01015250v1   I 7 C 0
s nomLeu3.chr1a            74566674 196 + 122973662 ACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGTTTCACCATGAGTTGTGTTCCCCAGATGCTGGTCAACCTCTAGGAGCCAAAGAAGACCATCATTTTACTGGGCTGCTCTGTCCAGTTCTTCATCTTTCTGTCCCTGGGG
i nomLeu3.chr1a            I 7 C 0
s rheMac8.chr4             30048047 196 + 172585720 ACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGACTTGTGTCCCCCAGATGCTGGTTAACCTCTGGGGCCCAAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGG
i rheMac8.chr4             I 7 C 0
s macFas5.chr4             29710894 196 - 170955103 ACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGACTTGTGTCCCCCAGATGCTGGTTAACCTCTGGGGCCCAAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGG
i macFas5.chr4             I 7 C 0
s macNem1.NW_012011356v1    2756392 196 -   2996164 ACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGACTTGTGTCCCCCAGATGCTGGTTAACCTCTGGGGCCCAAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGG
i macNem1.NW_012011356v1   I 7 C 0
s cerAty1.NW_012002711v1     509795 196 +    766320 ACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATATACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGACTTGTGTCCCCCAGATGCTGGTTAACCTCTGGGGCCCAAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGG
i cerAty1.NW_012002711v1   I 7 C 0
s chlSab2.chr17            28965870 196 -  71996105 ACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGACTTGTGTCCCCCAGATGCTGGTTAACCTCTGGGGCCCAAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGG
i chlSab2.chr17            I 7 C 0
s manLeu1.NW_012099233v1     142830 196 +    290775 ACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATACACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGACTTGTGTCCCCCAGATGCTGGTTAACCTCTGGGGCCCAAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGG
i manLeu1.NW_012099233v1   I 1233 C 0
s colAng1.NW_012115566v1    2603137 193 -   3067355 ACTCATCATCCTGCTGTCTGTGCTGAACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGAGTTGTGTCCCCCAGATGTTGGTTAACCTCTGGGGCCCA---AAGACCATCAGCTTCCTGGGCTGCTCTGTTCAGCTCTTCATCTTCCTGTCCCTGGGG
i colAng1.NW_012115566v1   I 6 C 0
s saiBol1.JH378357           186574 196 -    242197 ACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTCTTCCTCTCCAACCTCTCCTTCTTGGATCTCTGCTTCACCACGAGTTGTGTTCCCCAGATGCTGGTCAACCTCTGGGGCCCAAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGG
i saiBol1.JH378357         I 7 C 0
s cebCap1.NW_016107755v1     179354 196 -   1771730 ACTCATCATCCTGCTGTCTGTGCTGGACCCCAGACTCCACTCTCCAATGTACTTCTTCCTCTCCAACCTCTCCTTCTTGGATCTCAGCTTCACCAAGGGTTGTGTTCCCCAGATGCTGGTCAACCTCTGGGGCCCAAAGAAGACCATTAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGG
i cebCap1.NW_016107755v1   I 7 C 0
s aotNan1.NW_018509740v1     253997 196 -    457564 ACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTCTTCCTCTCCAACCTCTCCTTCTTGGATCTCTGCTTCACCACGAGCTGTGTCCCCCAGATGCTGGTCAACCTCTGGGGTCCAAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGG
i aotNan1.NW_018509740v1   I 7 C 0
s proCoq1.NW_012152574v1     568803 196 +    730504 AGTCATCATCGTGCTGTCTGTGTTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACCAGCTGTGTCCCCCAGATGCTGGTCAACCTCTGGGGCCCAAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCGCTGGGG
i proCoq1.NW_012152574v1   I 7 C 0
s otoGar3.GL873550            16739 196 +  18854210 ACTCATCATCCTGCTGTCTGTGCTGGACCCCAAGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACAAGTTGTGTCCCCCAGATGCTGGTCAACCTCTGGGGCCCAAAGAAAACCATCAGCTTCCTGGGCTGCTCTGTGCAGCTCTTCATCTTCCTGTCCCTGGGG
i otoGar3.GL873550         I 7 I 21
s mm10.chr17               57816747 196 -  94987271 ACTCATCCTCTTGCTGTCCACCCTGGATCCCAGGCTCCACACTCCAATGTACTTCTTCCTCTCTAACCTCTCCTTCTTGGACCTCTGCTTCACCACAACCTGTGTCCCCCAGATGCTGTTCAACCTCTGGGGCCCCGAAAAGACCATCAGCTTCCTGGGATGCTTTGTCTAGCTCTTCATCTTCATGTCCCTGGGT
i mm10.chr17               I 7 C 0

a score=306552.000000
s hg38.chr6_GL000254v2_alt   839612 28 +   4827813 ACCACTGAGTGCATCCTCCTGACGGTGA
s panTro5.chr6             29802345 28 + 175400573 CCCACTGAGTGCATCCTCCTGACAGTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30036979 28 + 173848474 CCCACTGAGTGCATCCTCCTGACGGTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5840375 28 +   6154872 ACCACTGAGTGCATCCTCCTGACAGTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74566870 28 + 122973662 ACCACTGAGTGCAAACTCCTGACAGTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30048243 28 + 172585720 ACCACTGAGTGCATCCTCTTGACAGTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29711090 28 - 170955103 ACCACTGAGTGCATCCTCTTGACAGTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2756588 28 -   2996164 ACCACTGAGTGCATCCTGTTGACAGTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     509991 28 +    766320 ACCACTGAGTGCATCCTCTTGACAGTGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28966066 28 -  71996105 ACCACTGAGTGTATCCTCTTGACAGTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     143026 28 +    290775 ACCACTGAGTGCATCCTCTTGACAGTGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2603330 28 -   3067355 ACCACTGAGTGCATCCTCTTGACAGTGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           186770 28 -    242197 ACCACTGAGTGCATCCTCCTTACAGTGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     179550 28 -   1771730 ACCACTGAGTGCATCTTCCTTACAGTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     254193 28 -    457564 ACCACTGAGTGCATCCTCCTTACAGTGA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     568999 28 +    730504 ACCACTGAGTGCATCCTCCTGTCAGTGA
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57816943 28 -  94987271 ACAACAGAGTGCATCCTCCTGACTGTAA
i mm10.chr17               C 0 C 0
e otoGar3.GL873550            16935 21 +  18854210 I

a score=1981588.000000
s hg38.chr6_GL000254v2_alt   839640 157 +   4827813 TGGCCTTTGACCGCTACATGGCTATCTTCAAGCCCCTGCGCCATGCCACCATCGTCCACCTCTGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTAGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCTTTCTGCCC
s panTro5.chr6             29802373 157 + 175400573 TGGCCTTTGACCGCTACATGGCTATCTTCAAGCCCCTGCGCCATGCCACCATCGTCCACCTCTGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTAGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCTTTCTGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30037007 157 + 173848474 TGGCCTTTGACCGCTACATGGCTATCTTCAAGCCCCTGCGCCATGCCACCATCGTCCACCTCTGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTAGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCTTTCTGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5840403 157 +   6154872 TGGCCTTTGACCGCTACATGGCTATCTTCAAGCCCCTGCGCCATGCCACCATCGTCCACCTCTGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTAGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74566898 157 + 122973662 TGGCCTTTGACCACTACATGGCTATCTTCAAGCCCCTCCACCATGCCACCATCATCCACCTCTACCTGTGTTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTAGTGGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGTCCTTCTGCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30048271 157 + 172585720 TGGCTTTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCATTATGCCACCATCATCCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCC
i rheMac8.chr4             C 0 T 14848
s macFas5.chr4             29711118 157 - 170955103 TGGCTTTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCATTATGCCACCATCATCCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCC
i macFas5.chr4             C 0 T 15246
s macNem1.NW_012011356v1    2756616 157 -   2996164 TGGCTTTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCATTATGCCACCATCATCCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     510019 157 +    766320 TGGCTTTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCATTATGCCACCATCATCCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28966094 157 -  71996105 TGGCTTTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCACTATGCCACCATCATCCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTTCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     143054 157 +    290775 TGGCTTTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCATTATGCCACCATCATCCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2603358 157 -   3067355 TGGCATTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCACTATGCCACCATCATCCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAATCAGTGGTCCAGATACTATCCACCCTGTGCCTGCCCTTCTGCCC
i colAng1.NW_012115566v1   C 0 T 21826
s saiBol1.JH378357           186798 157 -    242197 TGGCCTTTGATCGCTACGTGGCTGTCTTCCAGCCCCTCCACTATGCCACCATCATCCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCGTGGGTCATTGGGCTAGTGGAGTCACTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     179578 157 -   1771730 TGGTCTTTGATCGCTATGTGGCTGTCTGCCAGCCCCTCCACTATGCCACCATCATCCACCCCCACCTGTGCTGGCAGCTGGCATCTGTGGCGTGGGTCATTGGGCTGGTGGAGTCACTGGTCTAGACATCATCCACCCTGCGCCTGCCCTTCTGCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     254221 157 -    457564 TGGCCTTTGATCGCTACGTGGCTGTCTGCCAGCCCCTCCACTATGCCACCATCATCCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCGTGGGTCATTGGGCTGGTGGAGTCACTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     569027 157 +    730504 TGGCCTTTGACCGCTATGTGGCTGTCTGCCAGCCCCTCCACTACGCCACCATCATCCACCCCCACCTGTGCCGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTTCAGACACCACCCACCCTCCGCCTGCCCTTCTGCCC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            16956 157 +  18854210 TGGCCTTTGACCGCTATGTGGCTGTCTGCCAACCCCTCCACTATGCCACCATCATCCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTCTCCTGGGTTATTGGGCTGGTGGAGTCAGTGGTTCAGACACCACCCACCCTCCGCCTGCCCTTCTGCCC
i otoGar3.GL873550         I 21 C 0
s mm10.chr17               57816971 157 -  94987271 TGGCCTTTGACCGCTATGTGGCTGTGTGCCAGCCCCTGCACTATGCCACAGTCATCAACCCCCGCCTATGTCAGCAGTTGGCAGGTATAGCTTGGGCTATAGGTTTGGTCCAATCCATAGTTCAGACACCTCCCACCCTCAAACTGCCATTTTGTTC
i mm10.chr17               C 0 C 0

a score=49345.000000
s hg38.chr6_GL000254v2_alt   839797 4 +   4827813 CCAT
s panTro5.chr6             29802530 4 + 175400573 CCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30037164 4 + 173848474 CCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5840560 4 +   6154872 CCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74567055 4 + 122973662 CCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30033580 4 + 172585720 CCAT
i rheMac8.chr4             T 14848 C 0
s macFas5.chr4             29696029 4 - 170955103 CCAT
i macFas5.chr4             T 15246 C 0
s macNem1.NW_012011356v1    2756773 4 -   2996164 CCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     510176 4 +    766320 CCAT
i cerAty1.NW_012002711v1   C 0 T 16282
s chlSab2.chr17            28966251 4 -  71996105 CCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     143211 4 +    290775 CCAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2581689 4 -   3067355 CCAT
i colAng1.NW_012115566v1   T 21826 C 0
s saiBol1.JH378357           186955 4 -    242197 CCAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     179735 4 -   1771730 CCAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     254378 4 -    457564 CCAT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     569184 4 +    730504 CCAC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            17113 4 +  18854210 ACAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57817128 4 -  94987271 CCAC
i mm10.chr17               C 0 C 0

a score=8252.000000
s hg38.chr6_GL000254v2_alt   839801 2 +   4827813 CA-
s panTro5.chr6             29802534 2 + 175400573 CA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30037168 2 + 173848474 CA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5840564 2 +   6154872 CA-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74567059 2 + 122973662 CG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30033584 2 + 172585720 CA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29696033 2 - 170955103 CA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2756777 2 -   2996164 CG-
i macNem1.NW_012011356v1   C 0 T 14579
s cerAty1.NW_012002711v1     493898 2 +    766320 CA-
i cerAty1.NW_012002711v1   T 16282 C 0
s chlSab2.chr17            28966255 2 -  71996105 CG-
i chlSab2.chr17            C 0 T 15390
s manLeu1.NW_012099233v1     143215 2 +    290775 TG-
i manLeu1.NW_012099233v1   C 0 T 16054
s colAng1.NW_012115566v1    2581693 2 -   3067355 CG-
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           186959 2 -    242197 CG-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     179739 2 -   1771730 CG-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     254382 2 -    457564 CG-
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     569188 2 +    730504 CG-
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            17117 2 +  18854210 CG-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57817132 2 -  94987271 -AG
i mm10.chr17               C 0 C 0

a score=2161176.000000
s hg38.chr6_GL000254v2_alt   839803 169 +   4827813 GCAGGTGGATGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTCTCCTGTGAAGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGCTGTGCCTC--AGCCTCATCCTTGTCTCTTATGGAGCCATTGCCTGGGCAGTGCTAAGGACTAA
s panTro5.chr6             29802536 169 + 175400573 GCAGGTGGATGATTTTGTCTGTGAGATCCCAGCTCTAATTCGACTCTCCTGTGAAGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGCTGTGCCTC--AGCCTCATCCTTGTCTCTTATGGAGCCATTGCCTGGGCAGTGCTAAGGACTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30037170 169 + 173848474 GCAGGTGGATGATTTTGTCTGTGAGATCCCAGCTCTAATTCGACTCTCCTGTGAAGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGCTGTGCCTC--AGCCTCATCCTTGTCTCTTATGGAGCCATTGCCTGGGCAGTGCTAAGGACTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5840566 169 +   6154872 GCAGGTGGATGATTTTGTCTGTGAGATCCCAGCTCTAATTCGACTCTCCTGTGAAGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGCTGTGCCTC--AGCCTCATCCTTGTCTCTTATGGAGCCATTGCCTGGGCAGTGCTAAGGACTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74567061 169 + 122973662 GCAGGTGGATGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTCTCCTATGAAGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGCTGTGCCTC--AGCCTCATCCTTGTCTCTTATGGAGTCATTGCCTGGGCAGTGCTAAGGACTAA
i nomLeu3.chr1a            C 0 N 0
s rheMac8.chr4             30033586 169 + 172585720 GCAGGTGGATGATTTTGTCTGTGAGGTCCCAGTGCTAATTCGACTGTCCTGTGAAGACACCTCCTACAATGGGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGCTGTGCCTC--AGCCTCATCCTTGTCTCTTATGGAGCCATTGCCTGGGCAGTGCTGAGGACTAA
i rheMac8.chr4             C 0 I 2
s macFas5.chr4             29696035 169 - 170955103 GCAGGTGGATGATTTTGTCTGTGAGGTCCCAGTGCTAATTCGACTGTCCTGTGAAGACACCTCGTACAATGGGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGCTGTGCCTC--AGCCTCATCCTTGTCTCTTATGGAGCCATTGCCTGGGCAGTGCTGAGGACTAA
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1    2742200 169 -   2996164 GCAGGTGGATGATTTTGTCTGTGAGGTCCCAGTGCTAATTCGACTGTCCTGTGAAGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGCTGTGCCTC--AGCCTCATCCTTGTCTCTTATGAAGCCATTGCCTGGGCAGTGCTGAGGACTAA
i macNem1.NW_012011356v1   T 14579 I 2
s cerAty1.NW_012002711v1     493900 169 +    766320 GCAGGTGGATGATTTTGTCTGTGAGGTCCCAGTGCTAATTCGACTCTCCTGTGGGGACACCTCCTACAATGGGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGCTGTGCCTC--AGCCTCATCCTTGTCTCTTATGGAGCCATTGTCCGGGCAGTGCTAAGGACTAA
i cerAty1.NW_012002711v1   C 0 I 2
s chlSab2.chr17            28950867 169 -  71996105 GCAGGTGGATGATTTTGTCTGTGAGGTCCCAGTGCTAATTCGACTCTCCTGTGAAGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGCTGTGCCTC--AGCCTCATCCTTGTCTCTTATGGAGCCATTGCCTGGGCACTGCTAAGGACTAA
i chlSab2.chr17            T 15390 I 2
s manLeu1.NW_012099233v1     127163 169 +    290775 GCAGGTGGATGATTTTGTCTGTGAGGTCCCAGTGCTAATTCGACTCTCCTGTGGGGACACCTCCTACAATGGGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGCTGTGCCTC--AGCCTCATCCTTGTCTCTTATGGAGCCATTGTCCGGGCAGTGCTAAGGACTAA
i manLeu1.NW_012099233v1   T 16054 I 2
s colAng1.NW_012115566v1    2581695 169 -   3067355 GCAGGTGGATGATTTTGTCGGTGAGGTCCCAGTGCTAATTCGACTCCCCTGTGAAGACACCTCCTACAGTGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGCTGTGCCTC--AGCCTCATCCTTGTCTCTTATGGAGCCATTGCCTGGGCAGTGCTAAGGACTAA
i colAng1.NW_012115566v1   C 0 I 2
s saiBol1.JH378357           186961 171 -    242197 GCAGGTGGATGATTTTGTCTGCAAGGTCCCAGCTCTAATTCGACTCTCCTGTGGAGACACCTCCTACAACGAGATCCAAATGGCTGTTGCCAGTGTCTTCATCTTAGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTATGGAGCCATTGCTCGGGCAGTGCTGAGGATTAA
i saiBol1.JH378357         C 0 I 2
s cebCap1.NW_016107755v1     179741 171 -   1771730 GCAGGTGGAGGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTCTCCTGTGGAGACACCTCCTACAACGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTAGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTATGGAGCCATTGCTCAGGCAGTGCTGAGGATTAA
i cebCap1.NW_016107755v1   C 0 I 2
s aotNan1.NW_018509740v1     254384 171 -    457564 GCAGGTGGATGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTCTCCTGTGAAGACACCTCCTACAACGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGTTGTGCCTCTTAGCCTCATCCTTGTCTCTTATGGAGCCATTGCTCGGGCAGTGCTGAGGATTAA
i aotNan1.NW_018509740v1   C 0 I 2
s proCoq1.NW_012152574v1     569190 171 +    730504 GCAAGTGGATGATTTTGTCTGCGAGGTCCCTTCTCTAATTCGACTCTCCTGTGGAGACACCTCCTACAATGAGATCCAGATGGCTGTAGCCAGTGTCCTGATCTTGATCGTGCCCCTCAGCCTCATCCTTGTCTCTTATGGTGCCATTGCCCAGGCAGTGCTGAGGATTAA
i proCoq1.NW_012152574v1   C 0 I 2
s otoGar3.GL873550            17119 171 +  18854210 GCAAGTGGATGATTTTGTCTGCGAGGTCCCAGCTCTAATTCGACTCTCCTGTGCAGACACCTTCTACAATGAGATCCAAATAGCTGTTGCCAGTGTCCTAATCTTGATTGTGCCCCTCAGCCTCATCCTTGTCTCTTATGGTGCCATTGGCCGGGCAGTACTAAGGATTAA
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               57817134 171 -  94987271 GCAGATAGACAACTTTGTGTGTGAAGTCCCATCTCTAATTCAACTCTCTTGTGGAGACATCACATATAATGAGATCCAGATGGCTGTTGCTAGTATCTTCATTGTGGTTGTGCCTCTGAGTCTCATCCTTGTCTCTTATGGTGCCATTGCCAGGGCAGTGCTGAAGATAAG
i mm10.chr17               C 0 I 2

a score=2780581.000000
s hg38.chr6_GL000254v2_alt   839972 224 +   4827813 CTGCAAAAGGGCAGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTATCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCAAGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTTAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTG
s panTro5.chr6             29802705 224 + 175400573 CTGCAAAAGGGCAGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTGCCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCAAGTTCTTTGGTCTCTTCTACGCAGTGGGCACTCCTTCACTTAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30037339 224 + 173848474 CTGCAAAAGGGCAGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTGCCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCAAGTTCTTTGGTCTCTTCTACGCAGTGGGCACTCCTTCACTTAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5840735 224 +   6154872 CTGCAAAAGGGCAGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGAGCAAGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTTAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74395733 221 + 122973662 CTGC---AGGACAGAAGAAAGCATTTGGCACCTGCATCTCTCATCTTCTTGTGGTTTCTCTCTTTTATGGCACTGTCACAGGTGTCTACCTTCGACCAAAAAATCACTATGCTCATGAATGGGGCAAATTTCTCACTCTTTTCTACACTGTAGTAACCCCAACTCTTAATCCCCTCATCTACACTCTAAGGAACAAGGAGGTAAAGGGAGCACTAATAAGATTG
i nomLeu3.chr1a            N 0 N 0
s rheMac8.chr4             30033757 224 + 172585720 CTGAAAAAGGGTGGAGGAAAGCTTTTGGGACCTACTCCTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTTTACCTCCAGCCCAAAACTCCCTATGCCCAAGAGAGGGGCAGGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTGAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTG
i rheMac8.chr4             I 2 C 0
s macFas5.chr4             29696206 224 - 170955103 CTGAAAAAGGGCAGAGGAAAGCTTTTGGGACCTACTCCTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTTTACCTCCAGCCCAAAACTCCCTATGCCCAAGAGAGGGGCAAGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCGTCACTGAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTG
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1    2742371 224 -   2996164 CTGAAAAAGGGCGGAGGAAAGCTTTTGGGACCTACTCCTCCCATCTCGCTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTTTACCTCCAGCCCAAAACTCCCTATGCCCAAGAGAGGGGCAAGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCGTCACTGAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTG
i macNem1.NW_012011356v1   I 2 C 0
s cerAty1.NW_012002711v1     494071 224 +    766320 CTGAAAAAGGGCGGAGGAAAGCTTTTAGGACCTGCTCCTCCCATCTCACTGTGGTCAACCTCTTCTACAGCTCAGTCATTGCTGTTTACCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCAAGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTGAACTCTTTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTG
i cerAty1.NW_012002711v1   I 2 C 0
s chlSab2.chr17            28951038 224 -  71996105 CTGAAAAAGGGCGGAGGAAAGCTTTTAGGACCTGCTCCTCCCATCTCACTGTGGTCACCCTCTTCTGTAGCTCAGTCATTGCTGTTTACCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCAAGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTGAACTCTCTCATATACACCCTGAAGAACAAGGAGGTAACCAGGGCATTCAGGAGATTG
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012099233v1     127334 224 +    290775 CTGAAAAAGGGCGGAGGAAAGCTTTTAGGACCTGCTCCTCCCATCTCACTGTGGTCAACCTCTTCTACAGCTCAGTCATTGCTGTTTACCTCCAGCCCAAAAATCCCTACGCCCAAGAGAAGGGCAAGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTGAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTG
i manLeu1.NW_012099233v1   I 2 C 0
s colAng1.NW_012115566v1    2581866 224 -   3067355 CTGAAAAAGGGCGGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTTTATCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCAAGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTGAACTCTCTCATACACACCCTGAGGAACAAGGAGGTAACAAGGGCATTCAGGAGATTG
i colAng1.NW_012115566v1   I 2 C 0
s saiBol1.JH378357           187134 224 -    242197 CTGCAAAAGGGCGGAGGAAAGCTTTCGGGACTTGCTCTTCCCACCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTACTTCCAGCCCAAAAATCCCTATGCCCAAGAGAAGGGCAAGTTCTTTGTTCTCTTCTATGCAGTGGGCACTCCTTCACTTAACCCTCTCATATACACCCTGAGGAACAAGGAGGTCACCAGGGCATTGAGGAGATTG
i saiBol1.JH378357         I 2 C 0
s cebCap1.NW_016107755v1     179914 224 -   1771730 CTGCAAAAGGGCAGAGGAAAGCTTTCGGGACCTGCTCTTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTATCTCCAGCCCAAAAATCCCTATGCCCAAGAGAAGGGCAAGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTTAACCCTCTCACATACACCCTGAGGAACAAGGAGGTAACCGGGGCATTGAGGAGATTG
i cebCap1.NW_016107755v1   I 2 C 0
s aotNan1.NW_018509740v1     254557 224 -    457564 CTGCAAAAGGGCGGAGGAAAGCTTTCGGGACCTGCTCTTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCCCTATGCCCAAGAGAAGGGCAAGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTTAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACAAGGGCATTGAGGAGATTG
i aotNan1.NW_018509740v1   I 2 C 0
s proCoq1.NW_012152574v1     569363 224 +    730504 CTGCAAAAGGGAGGAGGAAAGCTTTTGGAACCTGCTCCTCCCATCTCACGGTTGTCATCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCCCTATGCCCCAGAGAGGGGCAAGTTCTTCGGTCTCTTCTACGCAGTGGGCACTCCTTCACTTAACCCCCTCATATACACCCTGAGGAACAAGGAGGTGAAGAGGGCATTCAGGAGGTTG
i proCoq1.NW_012152574v1   I 2 C 0
s otoGar3.GL873550            17292 224 +  18854210 CTGCAAAAGGAAGGAGGAAAGCTTTTGGAACCTGCTCCTCCCATCTCATGGTTGTCATCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCCCTATGCCCAAGAAAGGGGCAAGTTCTTTGGTCTCTTCTATGCAGTGGGAACGCCTTCACTTAACCCTCTCATATACACCCTGAGGAACAAAGAGGTAAAGAGTGCCTTCAGGAGGTTG
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               57817307 224 -  94987271 CTGCAAAGGGGCGCAGGAAAGCTTTTGGGACCTGTTCCTCCCACCTCATTGTGGTCACTCTCTTCTACAGCTCAGTCATTGCAGTTTATCTGCAGCCCAAAAACCCTTATGCCCGAGAGAGGGGCAAGTTCTTTGGTCTCTTTTATGCAGTGGGTACCCCTATACTCAACCCTCTTGTATATACCCTGAGGAACAAGGAGGTAAAAAGAGCATTCTGGAAGCTG
i mm10.chr17               I 2 C 0

a score=45551.000000
s hg38.chr6_GL000254v2_alt   840196 4 +   4827813 CTGG
s panTro5.chr6             29802929 4 + 175400573 CTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30037563 4 + 173848474 CTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5840959 4 +   6154872 CTGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30033981 4 + 172585720 CTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29696430 4 - 170955103 CTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2742595 4 -   2996164 CTGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     494295 4 +    766320 CTGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28951262 4 -  71996105 CTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     127558 4 +    290775 CTGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2582090 4 -   3067355 CTGG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           187358 4 -    242197 CTAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     180138 4 -   1771730 CTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     254781 4 -    457564 CTAG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     569587 4 +    730504 CTGG
i proCoq1.NW_012152574v1   C 0 T 1190
s otoGar3.GL873550            17516 4 +  18854210 CTGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57817531 4 -  94987271 CTAA
i mm10.chr17               C 0 C 0

a score=462165.000000
s hg38.chr6_GL000254v2_alt   840200 52 +   4827813 CGAAGGAAATGGGGCTCATACAAAGTTGAGGGAGAGCTGTTTAATGTGCTTT
s panTro5.chr6             29802933 52 + 175400573 GGAAGGAAATGGGGCTCACACAAAGCTGAGGGAGAGCTGCTTAATGTGCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30037567 52 + 173848474 GGAAGGAAATGGGGCTCACACAAAGCTGAGGGAGAGCTGCTTAATGTGCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5840963 52 +   6154872 CAAAGGAAATGGGGCTCATACAAAGTTGAGGGAGAGCTGCTTAATGTGCTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30033985 52 + 172585720 GGAAGGAAATGCGGCCCACACAAAGCTGGGGGAGAGCTGCTTAATGTGCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29696434 52 - 170955103 GGAAGGAAATGCGGCCCACACAAAGCTGGGGGAGAGCTGCTTAATGTGCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2742599 52 -   2996164 GGAAGGAAATGCGGCCCACACAAAGCTGGGGGAGAGCTGCTTAATGTGCTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     494299 52 +    766320 GGAAGGAAATGGGGCCCACACAAAGCTGGGGGAGAGCTGCTTAATGTGCTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28951266 52 -  71996105 GGAAGGAAATGGGGCCCACACAAAGCTAGGGGAGAGCTGCTTAATGTGCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     127562 52 +    290775 GGAAGGAAATGGGGCCCACACAAAGCTGGGGGAGAGCTGCTTAATGTGCTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2582094 52 -   3067355 GGAAGGAAATGGGGCCCACACAAAGCTGGGGGAGAGCTGCTTAATGTGCTTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           187362 52 -    242197 GGAAGGAAATAGAGCTCACACAAAGCCGAGGGAGAGCTGCTTAATATGCTTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     180142 52 -   1771730 GGAAGGAAATGGAGCTCACACAAAGCTGAGGGAGAGCTGCTTAATATGCTTT
i cebCap1.NW_016107755v1   C 0 T 10511
s aotNan1.NW_018509740v1     254785 52 -    457564 GGAAGGAAATGGAGCTCACACAAAGCTGAGGGAGAGCTGCTTAATATGCTTT
i aotNan1.NW_018509740v1   C 0 T 9855
s otoGar3.GL873550            17520 52 +  18854210 GGAAAGACAGGCACTCCAGGGAAAACTTAGGGAGAGATGCTTAATGTGCTTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57817535 52 -  94987271 GGAAAGATGAGGACTCTGAGGAGAGCTGAGGAAGAAATACTTAGCATACTTT
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T

a score=16201.000000
s hg38.chr6_GL000254v2_alt   840252 3 +   4827813 CTA
s panTro5.chr6             29802985 3 + 175400573 CTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30037619 3 + 173848474 CTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5841015 3 +   6154872 CTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30034037 3 + 172585720 CTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29696486 3 - 170955103 CTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2742651 3 -   2996164 CTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     494351 3 +    766320 CTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28951318 3 -  71996105 CTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     127614 3 +    290775 CTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2582146 3 -   3067355 TTA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550            17572 1 +  18854210 --A
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57817587 3 -  94987271 CCA
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           187414 0 -    242197 C
e aotNan1.NW_018509740v1     254837 9855 -    457564 T
e cebCap1.NW_016107755v1     180194 10511 -   1771730 T

a score=775079.000000
s hg38.chr6_GL000254v2_alt   840255 149 +   4827813 AATTAAGAAGAAATTATTTATCCTTTTGTGAACAAGTTTGAGCTCCCAAGTATACTACCTTTCATACACCCATCACAGTGTTTACAATGG------GTCACA---------------------------GTATATGAGTGTGTGTga----gagagagaaagagacagaga-aagactaagagtcag
s panTro5.chr6             29802988 149 + 175400573 AATTAAGAAGAAATTATTTATCCTTTTGTGAACAAGTTTGAGCTCCCAAGTATACTACCTTTCATACACCCATCAAAGTGTTTACAATGG------GTCACA---------------------------GTATATGAGTGTGTGTga----gagagagaaagagacagaga-aagactaagagtcag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30037622 149 + 173848474 AATTAAGAAGAAATTATTTATCCTTTTGTGAACAAGTTTGAGCTCCCAAGTATACTACCTTTCATACACCCATCAAAGTGTTTACAATGG------GTCACA---------------------------GTATATGAGTGTGTGTga----gagagagaaagagacagaga-aagactaagagtcag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5841018 149 +   6154872 AATTAAGAAGAAATTATTTATCCTTTTGTGAACAAGTTTGAGCTCCCAAGTATACTACCTTTCATACACCCATCAAAGTGTTTACAATGG------GTCACA---------------------------GTATATGAGTGTATGTga----gagagagaaagagacagaga-aagactaagagtcag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74567510 154 + 122973662 AAAAGAGAGGAGATTCTATGTGCTTTTATCAGAAAGTTTGAGTTCCCTGCCCCTCTGCCTTCCTCACACCCATTACATTG-TGAGAATGGATGAAAGCCACATGTC--------------------TGTGTGTGTGCATGTATGTGT----GCAAGAGACAGCGTCTGAAA-TGTAGTAA-------
i nomLeu3.chr1a            N 0 C 0
s rheMac8.chr4             30034040 149 + 172585720 AATTAAGACGAAATTATGTATCCTTTGGTGAACAAGTTTGAACTCCCAAGTATACTACCTTTCATACACCCATCAAAGCCTTTACAATGG------GTCACA---------------------------GTACATAAGTGTGTGTga----gagagagaaagagacagaga-cagactaagagtcag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29696489 149 - 170955103 AATTAAGAAGAAATTATGTATCCTTTGGTGAACAAGTTTGAACTCCCAAGTATACTACCTTTCATACACCCATCAAAGCCTTTACAATGG------GTCACA---------------------------GTACATTAGTGTGTGTGT----gagagagaaagagacagaga-aagactaagagtcag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2742654 149 -   2996164 AATTAAGAAGAAATTATGTATCCTTTGGTGAACAAGTTTGAACTCCCAAGTATACTACCTTTCATACACCCATCAAAGCCTTTACAATGG------GTCACA---------------------------GTACATTAGTGTGTGTGT----gagagagaaagagacagaga-aagactaagagtcag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     494354 153 +    766320 AATTAAGAAGAAACTATTTATCCTTTTGTGAACAAGTTTGAGTTCCCAAGTATACTACCTTTCATATACCCATCAAAGCCTTTACAATGG------GTCACA---------------------------GTACATTTGTGTGTGTGTgagagagagagaaagagacagaga-aagactaagagtcag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28951321 153 -  71996105 AATTAAGAAGAAATTATTTATCCTTTTGTGAACAAGTTTGAGCTCCCAAGTATACTACCTTTCATATACCCATCAAAGCCTTTACAATGG------GTCACA---------------------------GTACATTTGTGTGTGTgagagagagagagaaagagacagaga-aagactaagagtcag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     127617 153 +    290775 AATTAAGAAGAAACTATTTATCCTTTTGTGAACAAGTTTGAGTTCCCAAGTATACTACCTTTCATATACCCATCAAAGCCTTTACAATGG------GTCACA---------------------------GTACATTTGTGTGTGTGTgagagagagagaaagagacagaga-aagactaagagtcag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2582149 153 -   3067355 AATTAAGAAGAAATTATTCATCCTTTTGCGAACAAGTTTGAGCTCCCAAGTATACTACCTTTCATACACCCATCAAAGCCTTTACAATGG------GTCACA---------------------------GTACATCAGTGTGTGTGTgagagagagaaaaagagacagaga-aagactaagagtcaa
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           187414 182 -    242197 AAAAGAGAAGAGATTCTGTGTGCTTTTATCAGAAAGTTTGAGTTCCCTGCTCCTCTGCCTTCCTCACACCCATCACATTG-TGACAACGGATAAAAGTCACAtgtctgtgcatgtatgtggttgtgtgtgtgtgtgtgtgtgtgtgt----gtgtgtgCACATGCAAGAGATAGGGTTTGAAATGTA
i saiBol1.JH378357         C 0 C 0
s otoGar3.GL873550            17574 140 +  18854210 AATTGAGAAGAGATTCTACATGCGTTTATGAGGAAGTTTAAATTACCCACCCT-CTGTCTTCCT--CATCCATCATACCA-CAGCAATAG------ATGATA---------------------------GC-CAGCTCTGTATGTGT----GCGTGAGAGAGAGGTAGAGA-----CTGAGAATATG
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57817590 142 -  94987271 AATTAAGATGAA--TTAGAACCTTTGTTTTAAAAAAAATGAACTTCTGAGTCTACTTACTCTTCCA-AGCCACAACAGTAGACCTAGTGA------GTGGCA---------------------------GGCTAT-AGTG---GAGG----GGGATGGGTAGTGAGAAGGA-GAGAAGCAGAATCAG
i mm10.chr17               C 0 I 80210
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e aotNan1.NW_018509740v1     254837 9855 -    457564 T
e cebCap1.NW_016107755v1     180194 10511 -   1771730 T

a score=148828.000000
s hg38.chr6_GL000254v2_alt   840404 22 +   4827813 gtaagagGAGGTAGGTATCTTT
s panTro5.chr6             29803137 22 + 175400573 gtaagagGAGGTAGGTATCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30037771 22 + 173848474 gtaagagGAGGTAGGTATCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5841167 22 +   6154872 gtaagagGAGGTAGGTGTCTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74567664 14 + 122973662 --------AGGGAGGTATCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30034189 22 + 172585720 GTAAGAGGAGGTAGGTATCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29696638 22 - 170955103 gtaagagGAGGTAGGTATCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2742803 22 -   2996164 gtaagagGAGGTAGGTATCTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     494507 22 +    766320 gtaagagGAGGTAGGTATCTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28951474 22 -  71996105 gtaagagGAGGTAGGTATCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     127770 22 +    290775 gtaagagGAGGTAGGTATCTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2582302 22 -   3067355 gtaagagGAGGTAGGTATCTTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           187596 18 -    242197 GTAAAAGG----AAGTATCCTT
i saiBol1.JH378357         C 0 C 0
s otoGar3.GL873550            17714 22 +  18854210 GTAAATGGAGGTAAATATCTTT
i otoGar3.GL873550         C 0 T 6010
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e aotNan1.NW_018509740v1     254837 9855 -    457564 T
e cebCap1.NW_016107755v1     180194 10511 -   1771730 T

a score=434501.000000
s hg38.chr6_GL000254v2_alt   840426 103 +   4827813 AATTAACA---TCTAAAGCTCAAAAAGATTAT---CATACCTGCCCatttttaatatttaatttctatatttttatt----ttcttttcaatttGGTTTTTAACTCTCTTCTC
s panTro5.chr6             29803159 103 + 175400573 AATTAACA---TCTAAAGCTCAAAAAGATTAT---CATACCTGCCCatttttaatatttaatttctatatttttatt----ttcttttcaatttGGTTTTTAACTCTCTTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30037793 103 + 173848474 AATTAACA---TCTAAAGCTCAAAAAGATTAT---CATACCTGCCCatttttaatatttaatttctatatttttatt----ttcttttcaatttGGTTTTTAACTCTCTTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5841189 103 +   6154872 AATTAACA---TCTAAAGCTCAAAAAGATTAT---CATACCTGCCCatttttaatatttaatttctatatttttatt----ttcttttcaatttGGTTTTTAACTCTCTTCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74567678  62 + 122973662 A------------------TGCGAAAAATTATAGGCAT-------CAAGTATAATATTT------TACATTTTT-TT----CTATTTTAAG---------------TCTTCGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30034211  98 + 172585720 AATTAACA---TCTAAAACTCAAAAAGATTAT---CATACTTGCCCa-ttttaatatttaatttctatatttttatt----ttcttttcgat----tttttaCCTGTCTTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29696660  98 - 170955103 AATTAACA---TCTAAAACTCAAAAAGATTAT---CATACTTGCCCA-TTTTAATATTTAATTTCTATATTTTTATT----TTCTTTTCGAT----TTTTTAACTGTCTTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2742825  98 -   2996164 AATTAACA---TCTAAAACTCAAAAAGATTAT---CATACTTGCCCA-TTTTAATATTTAATTTCTATATTTTTATT----TTCTTTTCGAT----TTTTTAACTGTCTTCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     494529  98 +    766320 AATTAACA---TCTAAAACGCAAAAAGATTAT---CATACTTGCCCa-ttttaatatttaatttctatatttttatt----ttcttttcgat----tttttaaCTGTCTTCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28951496  98 -  71996105 AATTAACA---TCTAAAACGCAAAAAAATTAC---CATACTTGCCCA-TTTTAATATTTAATTTCTATATTTTTATT----TTCTTTTCGAT----TTTTTAACTGTCTTCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     127792  98 +    290775 AATTAACA---TCTAAAACACAAAAAGATTAT---CATACTTGCCCa-ttttaatatttaatttctatatttttatt----ttcttttcgat----tttttaaCTGTCTTCTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2582324  98 -   3067355 AATTAACA---TCTAAAACTCAAAAAGATTAT---CATACTTGCCCa-ttttaatatttaatttctatatttttatt----ttctttttgat----tttttaaCTGTCTTCTC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           187614 103 -    242197 ATGTGAAAATTTGTAGAAATCAGGAATATTTT---CTT------CTA-TTTTAAATCTTTGCATCTATATTCATGTTCCTACCTTTATCATTTCCATTTCTAATTCCCCTCCC
i saiBol1.JH378357         C 0 T 12069
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e aotNan1.NW_018509740v1     254837 9855 -    457564 T
e cebCap1.NW_016107755v1     180194 10511 -   1771730 T

a score=434452.000000
s hg38.chr6_GL000254v2_alt   840529 103 +   4827813 CCCTACAG----GTTCTCCAAATGCACCATGCCTATTTCTGGTTATGTAACCCCTCTCCGATTGTTACATTATCATCATCATTTTACCATCACTTGTGATTCttttt-----
s panTro5.chr6             29803262  98 + 175400573 CACTACAG----GTTCTCCAAATGCACCATGCCTATTTCTGGTTATGTAACCCCTCTCTGATTGTTACATTATCATCATCATTTTACCATCACTTGTGAttc----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30037896  98 + 173848474 CACTACAG----GTTCTCCAAATGCACCATGCCTATTTCTGGTTATGTAACCCCTCTCTGATTGTTACATTATCATCATCATTTTACCATCACTTGTGAttc----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5841292  98 +   6154872 CACTACAG----GTTCTCCAAATGCACCATGCCTATTTCTGGTTATGTAACCCCTCTCCGATTGTTACATTATCATCATCATTTTACCATCACTTGTGAttc----------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74567740  78 + 122973662 CTCCATAGTCATGTTC-CTACTTTTATCACTTCCATTTTTAATT------CCCCTCCC---TTGCCATATCCCCACTAttctttt--------------ttt----------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30034309 103 + 172585720 CATTACAG----GTTCTCCAGATACACCACGCCTATTTCTGGTTATGTAACCTCTCTCTGATTCTTATATTATCATCATCACTTTACCATCACttttgattt-----ttttt
i rheMac8.chr4             C 0 I 10
s macFas5.chr4             29696758 103 - 170955103 CATTACAG----GTTCTCCAGATACACCACGCCTATTTCTGGTTATGTAACCTCTCTCTGATTCTTATATTATCATCATCACTTTACCATCACttttgattt-----ttttt
i macFas5.chr4             C 0 I 10
s macNem1.NW_012011356v1    2742923 103 -   2996164 CATTACAG----GTTCTCCAGATACACCATGCCTATTTCTGGTTATGTAACCTCTCTCTGATTCTTATATTATCATCATCACTTTACCATCACttttgattt-----ttttt
i macNem1.NW_012011356v1   C 0 I 10
s cerAty1.NW_012002711v1     494627 103 +    766320 CATTACAG----GTTCTCCAAATACACCATGCCTATTTCTGGTTATGTAACCTCTCTCTGATTCTCATATTATCATCATCCCTTTACCATCACttttgattt-----ttttt
i cerAty1.NW_012002711v1   C 0 I 2013
s chlSab2.chr17            28951594 103 -  71996105 CATTACAG----GTTCTCCAAATACACCATGCCTATTTCTGGTTATGTAACCTCTCTCTGATTCTCATATTATCATCATCACTTTACCATCACTTTTGAttt-----ttttt
i chlSab2.chr17            C 0 I 15
s manLeu1.NW_012099233v1     127890 103 +    290775 CATTACAG----GTTCTCCAAATACACCATGCCTATTTCTGGTTATGTAACCTCTCTCTGATTCTCATATTATCATCATCACTTTACCATCACttttgattt-----ttttt
i manLeu1.NW_012099233v1   C 0 I 15
s colAng1.NW_012115566v1    2582422 100 -   3067355 CATTACAG----GTTCTCCAAATACACCATGTCTATTTCTGGTTATGTAACCTCTCTCTGATTCTCATATTATTATCATCACTTTACTATCACTTTTGAttt-----tt---
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           187717 12069 -    242197 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e aotNan1.NW_018509740v1     254837 9855 -    457564 T
e cebCap1.NW_016107755v1     180194 10511 -   1771730 T

a score=1436026.000000
s hg38.chr6_GL000254v2_alt   840632 340 +   4827813 tttttttt-ttttttt---tttttgagatggagtctcactctgtcgcccaggctggagtgcagtggtgcgatcttggctccctgcaacctccgcctcctgggttcaagtgattcttctgccccagcttc-ctgagtagctgggactacaggcacatgccaccatgcccagctaattttt---tatttttagtagagacggggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattataggagtgagccacatcacccag-----------------------ccACTTCTGATTCTGACAATGTCTTCTTTCCTTTGTCATCA
s panTro5.chr6             29803360 336 + 175400573 ----tttt-ttatttt---tttttgagatggagtctcactctgtcgcccaggctggagtgcagtggtgcgatcttggctccctgcaacctccgcctcccgggttcaagtgattcttctgccccagcttc-ccgagtagctgggactacaggcacatgccaccatgcccagctaattttt---tatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccgcccgccttggcctcccaaagtgctgggattataggagtgagccatggcgcccag-----------------------ccACTTCTGATTCTGACAATGTCTTCTTTCCTTTGTCATCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30037994 334 + 173848474 ------tt-tttattt---tttttgagatggagtctcactctgtcgcccaggctggagtgcagtggtgcgatcttggctccctgcaacctccgcctcccgggttcaagtgattcttctgccccagcttc-ccgagtagctgggactacaggcacatgccaccatgcccagctaattttt---tatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccgcccgccttggcctcccaaagtgctgggattataggagtgagccatggcgcccag-----------------------ccACTTCTGATTCTGACAATGTCTTCTTTCCTTTGTCATCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5841390 339 +   6154872 -ttttttt-ttttttt---tttttgagatggagtctcactctgtcgcccaggctggagtgcagtggtgcgatcttagctccctgcaacctccgcctcccgggttcaagtgattcttctgccccagcttc-ccgagtagctgggactacaggcacatgccaccatgcccagctaattttt---tatttttagtagagacggggtttcaccatgtcggccaggctggtctcgaactcctgacctcaggtgatccgcccgcctcggcctcccaaagtgctgggattataggagtgagccacggcgcccag-----------------------ccACTTCTGATTCTGACAATGTCTTCTTTCCTTTGTCATCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74567818 350 + 122973662 ---ttttt-ttttttt---tttttgagacggagtctcgctctgtcacccaggctggagtgcagtggcgcgatctcggctcgctgcaagctccgcctcccgggttcacgccattctcctgcctcagcctctccgagtagctgggactacaggcgcccgccaccacgcccagctaatttttttgtatttttagtagagacggggtttcaccg------------tggtctcgatctcctgacctt--gtgatccgcccccctcggcctcccaaagtgctgggattacaagcatgagccaccgcgcccggccTTTCCCACTATTCCTTCACCTCCAATTCTAATTCCTACCATATCTTCTTTGCTTCTCCCTCA
i nomLeu3.chr1a            C 0 I 77
s rheMac8.chr4             30034422 337 + 172585720 -ttttgtt-ttgttttg--tttttgagacagagtctcactctgtcacccaggctggagtgcagtggcgtgatctcggctcactgcaacctccgcttcccaggtttaagcaattctcctgcctcagcttc-ctgagtagctgggactacaggcgtgcgccaccacgcccagctaa-tttt---tatttcaagtagagacggggtttcaccatgttggccaggctgttctcaaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggagtgaaccatggtgcccag-----------------------ccACTTCTGATTCTTACAA--TCTCATTTCCTTTGTCATCA
i rheMac8.chr4             I 10 C 0
s macFas5.chr4             29696871 337 - 170955103 -ttttgtt-ttgttttg--tttttgagacagagtctcactctgtcacccaggctggagtgcagtggcgtgatctcggctcactgcaacctccgcttcccaggtttaagcaattctcctgcctcagcttc-ctgagtagctgggactacaggcgtgcgccaccacgcccagctaa-tttt---tatttcaagtagagacggggtttcaccatgttggccaggctgttctcaaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggagtgaaccatggtgcccag-----------------------ccACTTCTGATTCTTACAA--TCTTATTTCCTTTGACATCA
i macFas5.chr4             I 10 C 0
s macNem1.NW_012011356v1    2743036 338 -   2996164 -ttttgtt-ttgttttg--tttttgagacagagtctcactctgtcacccaggctggagtgcagtggcgtgatctcggctcactgcaacctccgcttcccaggtttaagcaattctcctgcctcagcttc-ctgagtagctgggactacaggcgtgcgccaccacgcccagctaattttt---tatttcaagtagagacggggtttcaccatgttggccaggctgttctcaaactcctgacctcaggtgatccacccgcctcagcctcccaaagtgctgggattacaggagtgaaccatggtgcccag-----------------------ccACTTCTGATTCTTACAA--TCTTATTTCCTTTGACATCA
i macNem1.NW_012011356v1   I 10 C 0
s chlSab2.chr17            28951712 338 -  71996105 ---ttgtt-ttgttttgtttttttgagacagagtctcactctgtcacccaggctggagtgcagtggcgtgatctcggctcactgcaacctctacttcccaggtttaagcaattctcctgcctcagcttc-ccgagtagctgggactacaggcgtgcgccaccacacccagctaattttt---tattttaagtagagacggggtttcaccatgttggccaggctgttctcaaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggagtgaaccatagtgcccag-----------------------ccACTTCTGATTCTTACAA--TCTTATTTCCTTTGTCATCA
i chlSab2.chr17            I 15 C 0
s manLeu1.NW_012099233v1     128008 338 +    290775 ---ttgtt-ttgttttgtttttttgagacagagtttcactctgtcacccaggctggagtgcagtggcgtgatctcggctcactgcaacctctacttcccaggattaagcaattctcctgcctcagcttc-ccgagtagctgggactacaggcgtgcgccaccatacccagctaattttt---tattttaagtagagacggggtttcaccatgttggccaggctgttctcaaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggagtgaaccatagtgcccag-----------------------ccACTTCTGATTCTTACAA--TCTTATTTCCTTTGTCATCA
i manLeu1.NW_012099233v1   I 15 C 0
s colAng1.NW_012115566v1    2582522 338 -   3067355 -tgttgttgttgttgt---tttttgagacagagtctcactctgtcacccaggctggagtgcagtggcatgatctcggctcactgcaacctcggcttcccaggtttaagcaattctcctgcctcagcttc-ccaagtagctgggactacaggcgtgtgccaccacacccagctaattttt---tacttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacccgccttggcctcccagagtgctgggattacaggagtgaaccatggtgcccag-----------------------ccACTTCTGATTCTTACAA--TCTTATTTCCTTTGTCATCA
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           187717 12069 -    242197 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e aotNan1.NW_018509740v1     254837 9855 -    457564 T
e cebCap1.NW_016107755v1     180194 10511 -   1771730 T
e cerAty1.NW_012002711v1     494730 2013 +    766320 I

a score=158031.000000
s hg38.chr6_GL000254v2_alt   840972 37 +   4827813 GGATGGTTCATCTCCACTTGCTTGAGGTGGACTGACa
s panTro5.chr6             29803696 37 + 175400573 GGATGGTTCATCTCCACTTGCTTGAGGTGGACTGACa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30038328 37 + 173848474 GGATGGTTCATCTCCACTTGCTTGAGGTGGACTGACa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5841729 37 +   6154872 GGATGGTTCATCTCCACTTGCTTGAGGTGGACTGACa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30034759 37 + 172585720 GGATGGTTCATCTCCACTTGCTTGAGGTGGACTGACa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29697208 37 - 170955103 GGATGGTTCATCTCCACTTGCTTGAGGTGGACTGACa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2743374 37 -   2996164 GGATGGTTCATCTCCACTTGCTTGAAGTGGACTGACa
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28952050 37 -  71996105 GGATGGTTCATCTCCACTTGCTTGAGGTGGACTGACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     128346 37 +    290775 GGATGGTTCATCTCCACTTGCTTGAGGTGGACTGACa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2582860 37 -   3067355 GGATGGTTCATCTCCACTTGCTTGAGGTGGACTGACa
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           187717 12069 -    242197 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e aotNan1.NW_018509740v1     254837 9855 -    457564 T
e cebCap1.NW_016107755v1     180194 10511 -   1771730 T
e cerAty1.NW_012002711v1     494730 2013 +    766320 I
e nomLeu3.chr1a            74568168 77 + 122973662 I

a score=530245.000000
s hg38.chr6_GL000254v2_alt   841009 130 +   4827813 ggaagctgacactcagagaatttagtaatttcacccaagaacacacag----caatttgttagacctaaatt--gagatgcata--------tctgttaacttaccaagtgcatgctgttggttttacaccaTTAT-AAATATAC
s panTro5.chr6             29803733 130 + 175400573 ggaagctgacactcagagaatttagtaatttcacccaagagcacacag----caatttgttagacctaaatt--gagctgcata--------tctgttaacttaccaagtgcatgctgttggttttacaccaTTAT-AAATATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30038365 130 + 173848474 ggaagctgacactcagagaatttagtaatttcacccaagagcacacag----caatttgttagacctaaatt--gagctgcata--------tctgttaacttaccaagtgcatgctgttggttttacaccaTTAT-AAATATAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5841766 130 +   6154872 ggaagctgacactcagagaattaagtaatttcacccaagaacacacag----caatttgttagacctaaatt--gagatgcata--------tctgttaacttaccaagtgcatgctgttggttttacaccaTTAT-AAATATAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74568245 144 + 122973662 ggaagctgaagcccagataagttcagaaactcacccaggaacacacagtgtccacagcatcagaactaaaatccaggccccataattttcagtcAGGCAACTC-TCAAATACACACTGTTGCTTTCACACTATAATCAAATATCC
i nomLeu3.chr1a            I 77 C 0
s rheMac8.chr4             30034796 130 + 172585720 gaaagttgaagctcagagaatgtagtaatttcacccaagaacacacag----cagtttgttagacctaaatt--gagatgcata--------tctgttaacttaccaagtgcatgcagttgcttttacaccaTTAT-AAATATAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29697245 130 - 170955103 gaaagttgaagctcagagaatgtagtaatttcacccaagaacacacag----cagtttgttagacctaaatt--gagatgcata--------tctgttaacttaccaagtgcatgcAGTTGCTTTTACACCATTAT-AAATATAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2743411 130 -   2996164 gaaagctgaagctcagagaatgtagtaatttcacccaagaacacacag----cagtttgttagacctaaatt--gagatgcata--------tctgttaacttaccaagtgcatgcagttgcttttacaccaTTAT-AAATATAC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28952087 130 -  71996105 GAAAGCTGAAGCTCAGAGAATGTAGTAATTTCACCCAAGAACATACAG----CAATTTGTTAGACCTAAATT--GAGATGCATA--------TCTGTTAACTTACCAAGTGCATGCAGTTGCTTTTACACCATTAT-AAATATAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     128383 130 +    290775 gaaagctgaagctcagagaatgtaataatttcacccaagaacacacag----caatttgttagacctaattt--gagatgcata--------tctgttaacttaccaggtgcatgcatttgcttttacaccaTTAT-AAATATAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2582897 129 -   3067355 gaaagctgaagttcagagaatgta-taatttcacccaagaacacacag----cagtttgttagacctaaatt--gagatgcata--------tctgttaacttaccaagtacatgcagttgcttttacaccaTTAT-AAATATAC
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           187717 12069 -    242197 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e aotNan1.NW_018509740v1     254837 9855 -    457564 T
e cebCap1.NW_016107755v1     180194 10511 -   1771730 T
e cerAty1.NW_012002711v1     494730 2013 +    766320 I

a score=331825.000000
s hg38.chr6_GL000254v2_alt   841139 64 +   4827813 CAACATCATTAGGATTTATACCCAAATGGGTTATCAGGCAGAAAACTCTATTTTTCCAGTCCTA
s panTro5.chr6             29803863 64 + 175400573 CAACATCATTAGGATTTATACCCAAATGGGTTATCAGGCAGAAAACTCTATTTTTCCAGTCCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30038495 64 + 173848474 CAACATCATTAGGATTTATACCCAAATGGGTTATCAGGCAGAAAACTCTATTTTTCCAGTCCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5841896 64 +   6154872 CAACATCATTAGGACTTATACCCAAATGGGTTATCAGGCAGAAAACTCTATTTTTCCAGTCCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74568389 51 + 122973662 CAGTAT--TTCAGGCTTGAGCC-----------TTACAAAGGAAACTTAGCTTCTTCAGTCCTA
i nomLeu3.chr1a            C 0 T 10821
s rheMac8.chr4             30034926 64 + 172585720 CAACATCATTAGGATTTATACCCAAATGGGTTATCAGGCAGAAAACTCTATTTTTCCAGTCCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29697375 64 - 170955103 CAACATCATTAGGATTTATACCCAAATGGGTTATCAGGCAGAAAACTCTATTTTTCCAGTCCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2743541 64 -   2996164 CAACATCATTAGGATTTATACCCAAATGGGTTATCAGGCAGAAAACTCTATTTTTCCAGTCCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     496743 64 +    766320 CAACATCATTAGGATTTATACCCAAATGGGTTATCAGGCAGAAAACTCTATTTTTCCAGTCCTA
i cerAty1.NW_012002711v1   I 2013 C 0
s chlSab2.chr17            28952217 64 -  71996105 CAGCATCATTAGGATTTATACCCAAATGGGTTATCAGGCAGAAAACTCTATTTTTCCAGTCCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     128513 64 +    290775 CAACATCATTAGGATTTATACCCAAATGGGTTATCAGGCAGAAAACTCTATTTTTCCAGTCCTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2583026 64 -   3067355 CAGCATCATTAGAATTTATACCCAAATAGGTTATCAGGCAGAAAACTCTATTTTTCCAGTCCTA
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           187717 12069 -    242197 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e aotNan1.NW_018509740v1     254837 9855 -    457564 T
e cebCap1.NW_016107755v1     180194 10511 -   1771730 T

a score=2256113.000000
s hg38.chr6_GL000254v2_alt   841203 462 +   4827813 GTAAGTTTTCTGATCATCCAGCTTTCCAGGGATCACAACACTAATCTCCTGCCAAATCCTGAAAATGTGCTCCCATTCCTGGAGATGATTTTCCTTTACCTCTTCTCAACCTCTGCATGACAGTGACCATGAGGAGTTGTGAGTCTGCTCTTCAGTGGCTACACAGTGCTAACAGCTGTCCTGCATCCATTTTCTAGTGCAGTTCTGAAATTCTGACCAAC--CTCTACTAGCCAGGCACAAACATGAAATCCAATTGTAAGTAATAAAGTGCTGCAATGGAGCCTGGATGGAGCAAGGGCCTCAGAAAAAAGGGAGCAGCAGTGTAAGCCCCAACTTCTATGAAATCTTATTTCCTTTTTCAAGTTGATCTACATTCATTACATTCTCAAAGCCTCACATGAATGGAATGGAGAGTGTGATGGAAAAATCTGTTTAGAACTGAACCATTCTCTCCTCTTTCCT
s panTro5.chr6             29803927 462 + 175400573 GTAGGTTTCCTGATCATCCAGCTTTCCAGGGATCACAACACTAATCGCCTGCCAAATCCTGAAAATGCGCTCCCATTCCTGGAGATGATTTTCCTTTACCTCTTCTCAACCTCTGCATGACAGTGACCATGAGGAGTTGTGAGTCTGCTCTTCAGTGGCTACACAGTGCTAACAGCTGTCCTGCATCCATTTTCTAGTGCAGTTCTGAAATTCTGACCAAC--CTCTACTAGCCAGGCACAAAAATGAAATCCAATTGTAAGTAATAAAGTGCTGCAATGGAGCCTGGATGGAGCAAGGGCCTCAGAAAAAAGGGAGCAGCAGTGTAAGCCCCAACTTCTATGAAATCTTATTTCCTTTTTCAAGTTGATCTACATTCATTACCTTCTCAAAGCCTCACATGAATGGAATGGAGAGTGTGATGGAAAAATCTGTTTAGAACTGAACCATTCTCTCCTCTTTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30038559 462 + 173848474 GTAGGTTTCCTGATCATCCAGCTTTCCAGGGATCACAACACTAATCTCCTGCCAAATCCTGAAAATGCGCTCCCATTCCTGGAGATGATTTTCCTTTACCTCTTCTCAACCTCTGCATGACAGTGACCATGAGGAGTTGTGAGTCTGCTCTTCAGTGGCTACACAGTGCTAACAGCTGTCCTGCATCCATTTTCCAGTGCAGTTCTGAAATTCTGACCAAC--CTCTACTAGCCAGGCACAAAAATGAAATCCAATTGTAAGTAATAAAGTGCTGCAATGGAGCCTGGATGGAGCAAGGGCCTCAGAAAAAAGGGAGCAGCAGTGTAAGCCCCAACTTCTATGAAATCTTATTTCCTTTTTCAAGTTGATCTACATTCATTACCTTCTCAAAGCCTCACATGAATGGAATGGAGAGTGTGATGGAAAAATCTGTTTAGAACTGAACCATTCTCTCCTCTTTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5841960 461 +   6154872 GTAGGTTTCCTGATCATCCAGCTTTCCA-GGATCACAACACTAATCTTCTGCCAAATCCTGAAAATGCGCTCCCATTCCTGGAGATGATTTTCCTTTACCTCTTCTCAACCTCTGCATGACAGTGACCATGAGGAGTTGTGAGTCTGCTCTTCAGTGGCTACACAGTGCTAACAGCTGTACTGCATCCATTTTCTAGTGCAGTTCTGAAATTCTGACCAAC--CTCTACTAGCCAGGCACAAAAATGAAATCCAATTGTAAGTAATAAAGTGCTGCAATGGAGCCTGGATGGAGCAAGGGCCTCAGAAAAAAGGGAGCAGCAGTGTAAGCCCCAACTTCTATGAAATCTTATTTCCTTTTTCAAGTTGATCTACATTCATTACATTCTCAAAGCCTCACATGAATGGAATGGAGAGTGTGATGGAAAAATCTGTTTAGAACTGAACCATTCTCTCCTCTTTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30034990 461 + 172585720 GTAGGTTTCCTGATTATCCAGCTTTCCAGGGATCACAACACTAATCTCCTGCCAAACCCTGAAAATGTGTTCCCATTTCTGGAGATGATTTTCCTTTACCTCTTCTCAACCTCTGTATAACAGTGACCATGAGGAGGTGTGAGTCTGCTCTGCAGTGGCTATACAGTGGTAACAGCTGTCCTGCACCCATTTCCTAGTGCGGTTCTGAAATTCTGACCAAC--CTCTACTGGCCAGGCACAAAAATGAAATCCAGTTGTAAGTAATAAAGTGCTGCAGTGGAGCCGGGATGGAGCAAAGGCCTCAAAAGAAAGGGAGCAGCAGTGTAAGCCCCAACTTCTATGAAATCTTATTTCCTTTTTCAAGTTGATCTACATTCATTACTTTCTCAAAGCCTCACATGAATGGAATGGAGAGTGTGATGG-AAAATCTGTTTAGAATGGAACCATTCTCTCCTCTTTCCT
i rheMac8.chr4             C 0 I 433
s macFas5.chr4             29697439 461 - 170955103 GTAGGTTTCCTGATTATCCAGCTTTCCAGGGATCACAACACTAATCTCCTGCCAAACCCTGAAAATGTGTTCCCATTTCTGGAGATGATTTTCCTTTACCTCTTCTCAACCTCTGTATAACAGTGACCATGAGGAGGTGTGAGTCTGCTCTGCAGTGGCTATACAGTGGTAACAGCTGTCCTGCACCCATTTCCTAGTGCGGTTCTGAAATTCTGACCAAC--CTCTACTGGCCAGGCACAAAAATGAAATCCAGTTGTAAGTAATAAAGTGCTGCAGTGGAGCCTGGATGGAGCAAAGGCCTCAGAAGAAAGGGAGCAGCAGTGTAAGCCCCAACTTCTATGAAATCTTATTTCCTTTTTCAAGTTGATCTACATTCATTACTTTCTCAAAGCCTCACATGAATGGAATGGAGAGTGTGATGG-AAAATCTGTTTAGAATGGAACCATTCTCTCCTCTTTCCT
i macFas5.chr4             C 0 I 433
s macNem1.NW_012011356v1    2743605 461 -   2996164 GTAGGTTTCCTGATTATCCGGCTTTCCAGGGATCACAACACTAATCTCCTGCCAAACCCTGAAAATGTGTTCCCATTTCTGGAGATGATTTTCCTTTACGTCTTCTCAACCTCTGTATAACAGTGACCATGAGAAGGTGTGAGTCTGCTCTGCAGTGGCTATACAGTGGTAACAGCTGTCCTGCACCCATTTCCTAGTGCGGTTCTGAAATTCTGACCAAC--CTCTACTGGCCAGGCACAAAAATGAAATCCAGTTGTAAGTAATAAAGTGCTGCAGTGGAGCCTGGATGGAGCAAAGGCCTCAGAAGAAAGGGAGCAGCAGTGTAAGCCCCAACTTCTATGAAATCTTATTTCCTTTTTCAAGTTGATCTACGTTCATTACTTTCTCAAAGCCTCACATGAATGGAATGGAGAGTGTGATGG-AAAATCTGTTTAGAATGGAACCATTCTCTCCTCTTTCCT
i macNem1.NW_012011356v1   C 0 I 433
s cerAty1.NW_012002711v1     496807 461 +    766320 GTAGGTTTCCTGATTATCCAGCTTTCCAGGGATCACAACACTAATCTCCTGCCAAACCCTGAAAATGTGTTCCCATTCCTGGAGATGATTTTCCTTTACCTCTTCTCAACCTCTGCATGACAGTGACCATGAGGAGGTGTGAGTCTGCTCTTCAGTGGCTACACAGTGGTAACAGCTGTCCTGCATCCATTTCCTAGTGCAGTTGTGAAATTCTGACCAAC--CTCTACTAGCCAGGCACAAAAATGAAATCCAGTTGTAAGTAATAAAGTGCTGCAGTGGAGCCTGGATGGAGCAAGGGCCTCAGAAGAAAGGGAGCAGAAGTGTAAGCCCCAACTTCTATGAAATCTTATTTCCTTTTTCAAGTTGATCTACGTTCATTACTTTCTCAAAGCCTCACATGAATGGAATGGAGAGTGTGATGG-AAAATCTGTTTAGAATGGAACCATTCTCTCCTCTTTCCT
i cerAty1.NW_012002711v1   C 0 I 433
s chlSab2.chr17            28952281 463 -  71996105 GTAGGTTTCCTGATCATCCAGCTTTCCATGGATCACAACACTAATCTCCTGCCAAACCCTGAAAATGTGTTCCCATTCCTGGAGATGATTTTCCTTTACCTCTTCTCAACCTCTGCATGACAGTGACCATGAGGAGGTGTGAGTCTGCTCTTCAGTGGCTACACAGTGGTAACAGCTGTCCTGCATCCATTTCCTAGTGCAGTTCTGAAATTCTGACCAACCTCTCTACTGGCCAGGCACAAAAATGAAATCCAGTTGTAAGTAATAAAGTGCTGCAGTGGAGCCTGGATGGAGCAAGGGCCTCAGAAGAAAGGGAGCAGCAGTGTAAGCCCCAACTTCTATGAAATCTTATTTCCTTTTTCAAGTTGATCTACATTCATTACCTTCCCAAAGCCTCACACGAATGGAATGGAGAGTGTGATGG-AAAATCTGTTTAGAATGGAACCATTCTCTCCTCTTTCCT
i chlSab2.chr17            C 0 I 433
s manLeu1.NW_012099233v1     128577 461 +    290775 GTAGGTTTCCTGATTATCCAGCTTTCCAGGGATCACAACACTAATCTCCCGCCAAACCCTGAAAATGTGTTCCCATTCCTGGAGATGATTTTCCTTTACCTCTTCTCAACCTCTGCATGACAGTGACCATGAGGAGGTGTGAGTCTGCTCTTCAGTGGCTACACAGTGGTAACAGCTGTCCTGCATCCATTTCCTAGTGCAGTTGTGAAATTCTGACCAAC--CTCTACTGGCCAGGCACAAAAATGAAATCCAGTTGTAAGTAATAAAGTGCTGCAGTGGAGCCTGGATGGAGCAAGGGCCTCAGAAGAAAGGGAGCAGAAGTGTAAGCCCCAACTTCTATGAAATCTTATTTCCTTTTTCAAGTTGATCTACGTTCATTACTTTCTCAAAGCCTCACATGAATGGAATGGAGAGTGTGATGG-AAAATCTGTTTAGAATGGAACCATTCTCTCCTCTTTCCT
i manLeu1.NW_012099233v1   C 0 I 433
s colAng1.NW_012115566v1    2583090 461 -   3067355 GTAGGTTTCCTGATCATCCAGCTTTCCAGGGATCACAACACTAATCTCCTACCAAACCCTGAAAAGGTGTTCCCATTCCTGGAGATGATTTTCCTTTACCTCTTCTCAACCTCTGCATGACAGTGACCATGAGGAGGTGTGAGTCTGCTCTTCAGTGGCTATACAGTGGTAACAGCTGTCCTGCATCCATTTCCTAGTGCAGTTCTGAAATTCTGACCAAC--CTCTACTGGCTAGGCACAAAAATGAAATCCAATTGTAAGTAATAAAGTGCTGCAGTGGAGCCTGGATGGAGCAAAGGCCTCAGAAGAAAGGGAGCAGCAGTGTAAGCCCCAACTTCTATGAAATCTTATTTCCTTTTTCAAGTTGATCTACATTCATTACCTTCTCAAAGCCTCACATGAATGGAATGGAGAGTGTGATGG-GAAATCTGTTTAGAACTGAACCATTCTCTCCTCTTTCCT
i colAng1.NW_012115566v1   C 0 I 434
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           187717 12069 -    242197 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e aotNan1.NW_018509740v1     254837 9855 -    457564 T
e cebCap1.NW_016107755v1     180194 10511 -   1771730 T
e nomLeu3.chr1a            74568440 10821 + 122973662 T

a score=5730.000000
s hg38.chr6_GL000254v2_alt   841665 10 +   4827813 gtcaggaaag
s panTro5.chr6             29804389 10 + 175400573 gtcaggaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30039021 10 + 173848474 gtcaggaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5842421 10 +   6154872 gtcaggaaag
i gorGor5.CYUI01015250v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           187717 12069 -    242197 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e aotNan1.NW_018509740v1     254837 9855 -    457564 T
e cebCap1.NW_016107755v1     180194 10511 -   1771730 T
e colAng1.NW_012115566v1    2583551 434 -   3067355 I
e manLeu1.NW_012099233v1     129038 433 +    290775 I
e chlSab2.chr17            28952744 433 -  71996105 I
e cerAty1.NW_012002711v1     497268 433 +    766320 I
e macNem1.NW_012011356v1    2744066 433 -   2996164 I
e macFas5.chr4             29697900 433 - 170955103 I
e rheMac8.chr4             30035451 433 + 172585720 I
e nomLeu3.chr1a            74568440 10821 + 122973662 T

a score=5819334.000000
s hg38.chr6_GL000254v2_alt   841675 1201 +   4827813 aggttatgctgtgataacaataccaatcctcagtgacttgaaacagcataggtttatttcttgctgctgctgcatgcccattgtcatccaaccagaggttctgccttgtcatcttcacccaaagatgtggactgacagaacacccaccatctcaaacactcctaggtgctgggaaaggaggaaataataagcatgacaaatggcaaactagcacttagtttccaatcggaagtggcataacac-tttgactcattggtcatttgccaaagcaaatctcatggctacatataacttcaaggtgaggggaaataaaccaatcatgtggcaggaaagggaaccagaaatatttggtggatgatatgaatgactactaactggctctttgcctccagtcttgaccgattgaaattgattatccatgttgaaccagagtaatcattccaaaatacaaatttgaatatgttactcccttagccaaaaataatatatagaatccccctgcaataaaatgtggagcccaaactcctagatcgggttcctgttttccagactttaccatccccacctcctaaggctcaaccacctagaatcctgcaagttcacacaactacctgcaagtgcaagtgtatgaaccacaccaggctctctgccacctttagcctttgaacgtgctcctccctctctttggaagactctcccctccagctcctcTCTACCACCAACAAAAAGCACTTCCCATGAAGTAACAGGAtctttttaattgtctacctctcaaagtacacagtaaggaaagtgagggtcagggttttggctcacttatccttatactcttagtgcctggcatagtatctggcacagtaggtatgtaatgaatatttattAcagtcacccctcagtatccccagggaattagttccaggacacccctcagataccaaaatctgcagatgctgaagtcccaaagttgaccttgcagaactcacaaatacaaaaagtcggttctcacatccatgagtttagcatcctgagaatattgtattttcaattcatgtttgcttgTGGATGCAGAACCTGTGGGAATGGAGGATAGACTATATTTACAGAAAGAAATCCTAGGGCCTGCGTCCTCACGAAAGCATTGGCCT-CCAGCGTGGGCTAACAGCAGAGCAGGGCGGA-GCTGGCCCATGG-TTGCAGACCTCTG
s panTro5.chr6             29804399 1201 + 175400573 aggttatgctgtgataacaataccaatcctcagtgacttgaaacagcataggtttatttcttgctgctgctgcatgcccattgtcatccaaccagaggttctgccttgtcatcctcaccccaagatgtggactgacagaacacccaccatctcaaacactcctaggtgctgggaaagaaggaaataataagcatgacaaatggcaaactagcacttagtttccattcggaagtggcataacac-tttgactcattggtcatttgccaaagcaaatctcatggctacatataacttcaaggtgaggggaaataaaccaatcatgtggcaggaaagggaaccagaaatatttggtggatgatatgaatgactactaactggctctttgcctccagtcttgaccgattcaaattgattatccatgttgaaccagagtaatcattccaaaatacaaatttgaatatgttactcccttagccaaaaataatatatagattccccctgcaataaaatgtggagcccaaactcctagatcgggttcctgttttccagactttaccatccccacctcctaaggctcaaccacctagaatcctgcaagttcacacaactacctgcaagtgcaagtgtatgaaccacaccaggctctctgccacctttagcctttgaacgtgctcctccctctctttggaagactctcccctccagctcctcTCTACCACCAACAAAAAGCACTTCCCATGAAGTAACAGGAtctttttaattgtctacctctcaaagtacacagtaaggaaagtgagggtcaaggttttggctcacttatccttatactcttagtgcctggcatagtatctggcacagtaggtatttaatgaatatttattAcagtcacccctcagtatccccagggaattagttccaggacacccctcagataccaaaatctgcagatgctgaagtcccaaagttgaccttgcagaactcacaaatacaaaaagtcggttctcacatccatgagtttagcatcctgagaatattgtattttcaattcatgtttgcttgTGGATGCAGAACCTGTGGGAATGGAGGATAGACTATATTTACAGAAAGAAATCCTAGGGCCTGCGTCCTCACGAAAGCATTGGCCT-CCAGCGCGGGCTAACAGCAGAGCAGGGCGGA-GCTGGCCCATGG-TTGCAGACCTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30039031 1201 + 173848474 aagttatgctgtgataacaataccaatcctcagtgacttgaaacagcataggtttatttcttgctgctgctgcatgcccattgtcatccaaccagaggttctgccttgtcatcctcaccccaagatgtggactgacagaacacccaccatctcaaacactcctaggtgctgggaaagaaggaaataataagcatgacaaatggcaaactagcacttagtttccaatcggaagtggcataacac-tttgactcattggtcatttgccaaagcaaatctcatggctacatataacttcaaggtgaggggaaataaaccaatcatgtggcaggaaagggaaccagaaatatttggtggatgatatgaatgactactaactggctctttgcctccagtcttgactgattcaaattgattatccatgttgaatcagagtaatcattccaaaatacaaatttgaatatgttactcccttagccaaaaataatatatagattccccctgcaataaaatgtggagcccaaactcctagatcgggttcctgttttccagactttaccatccccacctcctaaggctcaaccacctagaatcctgcaagttcacacaactacctgcaagtgcaagtgtatgaaccacaccaggctctctgccacctttagcctttgaacgtgctcctccctctctttggaagactctcccttccagctcctcTCTACCACCAACAAAAAGCACTTCCCATGAAGTAACAGGAtctttttaattgtctacctctcaaagtacacagtaaggaaagtgagggtcagggttttggctcacttatccttctactcttagtgcctggcatagtatctggcacagtaggtatttaatgaatatttattAcagtcacccctcagtatccccagggaattagttccaggacacccctcagataccaaaatctgcagatgctgaagtcccaaagttgaccttgcagaactcacaaatacaaaaagtcggttctcacatccatgagtttagcatcctgagaatattgtattttcaattcatgtttgcttgTGGATGCAGAACCTGTGGGAATGGAGGATAGACTATATTTACAGAAAGAAATCCTAGGGCCTGCGTCCTCACGAAAGCATTGGCCT-CCAGCGCGGGCTAACAGCAGAGCAGGGCGGA-GCTGGCCCATGG-TTGCAGACCTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5842431 1201 +   6154872 aggttatgctgtgataacaataccaatcctcagtgacttgaaacagcataggtttatttcttgctgctgctgcatgcccattgtcatccaaccagaggttctgccttgtcatcctcacccaaagatgtggactgacagaacacccaccatctcaaacactcctaggtgctgggaaaggaggaaataataagcatgacaaatggcaaactagcacttagtttccaatcggaagtggcataacac-tttgacttattggtcatttgccaaagcaaatctcatggctacatataacttcaaggtgaggggaaataaaccaatcatgtggcaggaaagggaaccagaaatatttggtggatgacatgaatgactactaactggctctttgcctccagtcttgaccgattcaaactgattatccatgttgaaccagagtaatcattccaaaatacaaatttgaatatgttactcccttagccaaaaataatatatagattccccctgcaataaaatgtggagcccaaactcctagatcgggttcctgttttccagactttaccatccccacctccaaaggctcaaccacctagaatcctgcaagttcacacaactacctgcaagtgcaagtgtatgaaccacaccaggctctctgccacctttagcctttgaacgtgctcctccctctttttggaagactctcccctccagctcctcTCTACCACCAACAAAAAGCACTT-CCATGAAGTAACAGGatctttttaattgtctacctctcaaagtacacggtaaggaaagtgagggtcagggttttggctcacttatccttatactcttagtgcctggcatagtatctggcacagtaggtatttaatgaatatttattAcagtcacccctcagtatccccagggaattagttccaggacacccctcagataccaaaatctgcagatgctgaagtcccaaagttgaccttgcagaactcacaaatacaaaaagtcggttctcacatccatgagtttagcatcctgagaatattgtattttcaattcatgtttgcttgTGGATGCAGAACCTGTGGGAATGGAGGATAGACTATATTTACAGAAAGAAATCCTAGGGCCTGCGTCCTCACGAAAGCATTGGCCTCCCAGCGCGGGCTAACAGCAGAGCAGGGCGGA-GCTGGCCCATGG-TTGCAGACCTCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30035884 1182 + 172585720 aggttatgctgtgataacaataccaatcctcagtgacttgaaacagcataggtttatttcttgctgctgctgcatgcccattgtcatccaaccagaggttctgccttgtcattctcaccccaagatgtggactgacagaacacccaccatctcaaacactcctaggtgctgggaaagaaggaaataataagcatgacaaatagcaaactagcacttagtttccgatcagaagtggcataacac-tttgactcattggtcatctgccaaagcaaatctcatggctacatataacttcaaggtgaggggaaataaaccaatcatgtggcaggaaagggaaccagaaatatctggtggatgataggaatgactactaactgcctctttgcctgcagtcttgaccgattcaaattgattatccatgttgaatcagagtaatcattctaaaacacaaatttgactatgttactcccttagccaaaaataatatatagctttcccctgcaataaaatgtggagcccaaactcctagatcgggttcctgttgtccagactttaccatccccacttcctaaggctcaaccgcctagaatcctgcaagttcacagaactatctgcaagtgcaagtgtttgagacacaccaggctctttgccacctttagcctttgaacgtgctcctccctctttttggaagactctcccctccagctcctcTCTACCACCAACAAAAAGCACTTCCCATGAAGTAACAAGATCtttttaattgtctacctctcaaagcacacagtaaggaaagtgagggccagggttttggctcacttatccttatactcttagtgcctggcatagtatctggcacagtaggcatttaatgaacatttattACAGTCATCCCTcagtatccccaggg---------------------cagataccaaaatctgcagatgctgaagttccaaagttgaccttgcagaactcacagatacaaaaagtcggttctcacatccatgagttcagcatcctgagaatattgtattttcaattcatgtttgcttgTAGATGCAGAACCTGTGGGAATGGAGGATAGACTATATTTATGGAAAGAAATCCTAGGCCCTGCGTCCTCATGAAAGCATTGGCCT-CTGGTGCAGACTGACAGCAGAGCAGGGCGGAGGCTGGCTCATGGTTTGCAGACCTCTG
i rheMac8.chr4             I 433 I 41
s macFas5.chr4             29698333 1180 - 170955103 aggttatgctgtgataacaataccaatcctcagtgacttgaaacagcataggtttatttcttgctgctgctgcatgcccattgtcatccaaccagaggttctgccttgtcattctcaccccaagatgtggactgacagaacacccaccatctcaaacactcctaggtgctgggaaagaaggaaataataagcatgacaaatagcaaactagcacttagtttccgatcagaagtggcataacac-tttgactcattggtcatctgccaaagcaaatctcatggctacatataacttcaaggtgaggggaaataaaccaatcatgtggcaggaaagggaaccagaaatatctggtggatgataggaatgactactaactgcctctttgcctgcagtcttgaccgattcaaattgattatccatgttgaatcagagtaatcattctaaaacacaaatttgactatgttactcccttagccaaaaataatatatagcttccccctgcaataaaatgtggagcccaaactcctAGATCGGGTTCCTGTTTTCCAGACTTTACCATCCCCACTTCCTAAGGCTCAACCGCCTAGAATCCTGCAAGTTCACAGAACTATCTGCAAGTGCAAGTGTTTGAGCcacaccaggctctttgccacctttagcctttgaacgtgctcctccctctttttggaagactctcccctccagctcctcTCTACCACCAACAAAAAGCACTTCCCATGAAGTAACAAGATCtttttaattgtctacctctcaaagcacacagtaaggaaagtgagggccagggttttggctcacttatccttatactcttagtgcctggcatagtatctggcacagtaggcatttaatgaacatttattACAGTCATCCCTcagtatccccaggg---------------------cagataccaaaatctgcagatgctgaagttccaaagttgaccttgcagaactcacagatacaaaaagtcggttctcacatccatgagttcagcatcctgagaatattgtattttcaattcatgtttgcttgTAGATGCAGAACCTGTGGGAATGGAGGATAGACTATATTTATGGAAAGAAATCCTAGGCCCTGCGTCCTCATGAAAGCATTGGCCT-CTGGTGCAGACTGACAGCAGAGCAGGGCGGA-GCTGGCTCATGG-TTGCAGACCTCTG
i macFas5.chr4             I 433 C 0
s macNem1.NW_012011356v1    2744499 1180 -   2996164 aggttatactgtgataacaataccaatcctcagtgacttgaaacagcataggtttatttcttgctgctgctgcatgcccattgtcatccaaccagaggttctgccttgtcatcctcaccccaagatgtggactgacagaacacccaccatctcaaacactcctaggtgctgggaaagaaggaaataataagcatgacaaatagcaaactagcacttagtttccgatcagaagtggcataacac-tttgactcattggtcatctgccaaagcaaatctcatggctacatataacttcaaggtgaggggaaataaaccaatcatgtggcaggaaagggaaccagaaatatctggtggatgataggaatgactactaactgcctctttgcctgcagtcttgaccgattcaaattgattatccatgttgaatcagagtaatcattctaaaacacaaatttgactatgttactcccttagccaaaaataatatatagcttccccctgcaataaaatgtggagcccaaactcctagatcgggttcctgttttccagactttaccatccccacttcctaaggctcaaccgcctagaatcctgcaagttcacagaactatctgcaagtgcaagtgtttgagccacaccaggctctttgccacctttagcctttgaacgtgctcctccctctttttggaagactctcccctccagctcctcTCTACCACCAACAAAAAGCACTTCCCATGAAGTAACAAGATCtttttaattgtctacctctcaaagcacacagtaaggaaagtgagggccagggttttggctcacttatccttatactcttagtgcctggcatagtttctggcacagtaggcatttaatgaacagttattACAGTCATCCCTcagtatccccaggg---------------------cagataccaaaatctgcagatgctgaagttccaaagttgaccttgcagaactcacagatacaaaaagtcggttctcacatccatgagttcagcatcctgagaatattgtattttcaattcatgtttgcttgTAGATGCAGAACCTGTGGGAATGGAGGATAGACTATATTTATGGAAAGAAATCCTAGGCCCTGCGTCCTCATGAAAGCATTGGCCT-CTGGTGCAGACTGACAGCAGAGCAGGGCGGA-GCTGGCTCATGG-TTGCAGACCTCTG
i macNem1.NW_012011356v1   I 433 C 0
s cerAty1.NW_012002711v1     497701 1201 +    766320 aggttatgctgtgataacaataccaatcctcagtgacttgaaacagcatacgtttatttcttgctgctgctgcatgcccattgtcatccaaccagaagttctgccttgtcatcctcaccccaagatgtggactggcagaacacccaccatctcaaacactcctaggtgctgggaaagaaggaaataataagcatgacaaatagcaaactagcacttagtttccaatcagaagtggcataacag-tttgactcattggtcatttgccaaagcaaatctcatggctacatataacttcaaggtaaggggaaataaaccaatcatgtggcaggaaagggaaccagaaatatctggtggatgataggaatgactactaactgcctctttgcctgcagtcttgaccgattcaaattgattatccatgttgaaccagagtaatcattctaaaatacaaatttgactatgttacttgcttagccaaaaataatatatagattccccctgcaataaaatgtggagcccaaactcctagatcgggttcctgttttctagactttaccatccccacctcctaaggctcaactgcctagaatcctgcaagttcacagaactacctgcaagtgcaagtgtttgagccacactatgctctctgccacatttagcctttgaacgtgctcctcccactttttggaagactctcccctcCGGCTCCTCTCTACCACCAACAAAAAGCACTTCCTATGAAGTAACAGGATCtttttaattgtctacctctcaaagcacacagtaaggaaagtgagggccggggttttggctcacttatcctaaaactcttagtgcctggcatagtatctggcatagtaggtatttaatgaacatttattAcggtcattcctcagtatccccagggaagtagttccaggacttccctcggataccaaaatctgcagatgctgaagttccaaagttgacctcgcagaactcacagatacaaaaagtcggttctcacatccatgagtttagcatcctgagaatattgtattttcaattcatgtttgcttgTGGATGCAGAACCTGTGGGAATGGAGGATAGACTATATTTATGGAAAGAAATCCCAGGCCCTGCGTCCTCATGAAAGCATTGGCCT-CCGGTGCAGACTGACAGCAGAGCAGGGCGGA-GCTGGCTCATGG-TTGCAGACCTCTG
i cerAty1.NW_012002711v1   I 433 C 0
s chlSab2.chr17            28953177 1201 -  71996105 aggttatgctgtgataacaataccaatcctcagtgacttgaaacagcatacgtttatttcttgctgctgctgcatgctcattgtcatccaaccagaggttctgccttgtcatcctcaccccaagatgtggactgacagaacacccaccatctcaaacactcctaggtgctgggaaagaaggaaataataagcatgacaaatagcaaactagcacttagtttccaatcagaagtggcgtaacac-tttgacttattggtcatttgccaaagcaaatctcatggctacatataacttcaaggtgaggggaaataaaccaatcatgtggcaagaaagggaaccagaaatatctggtggatgataggaatgactactaactgcctctttgcctgtagtcttgaccgattcaaattgattatccatgtcgaaccaaagtaatcattctaaaacacaaatttgactatgttactcgcttagccaaaaATAATATATAGATTCCCCCTGCAATAAAATGTGGAGCCCAAACTCCTAGATCGGGTTCCTGTTTTCTAGACTTTACCATCCCCACCTCCTAAGGCTCAACCGCCTAGAATCCTGCAAGTTCACAGAACTACCTGAAAGTGCAAGTGTTTGAGCcacaccaggctctctgccacctttagccttcgaacgtgctcctccctctttttggaagactctcccctccagctcctcTCTACCACCAACAAAAAGCACTTGCCATGAAGTAACAGGAtctttttaattgtctgcctctcaaagtacacagtaaagaaagtgagggccagggttttggctcacttatccttatactcttagtgcctggcatagtatctggcatagtaggtatttaatgaacatttattAcggtcatccctcagtatccccagggaagtagttccaggactcccctcggataccaaaatctgcagatgctgaagttccaaagttgaccttgcagaactcacagatacaaaaagtcggttctcacatccatgagttcagcatcctgagaatattgtattttcaattcatgtttgcttgTAGATGCAGAACCTGTGGGAATGGAGGATAGACTATATTTATGGAAAGAAATCCTAGGCCCTTCGTCCTCATGAAAGCATTGGCCT-CCGGTGCAGACTGACAGCAGAGCAGGGCGGA-GCTGGCTCATGG-TTGCAGACCTCTG
i chlSab2.chr17            I 433 C 0
s manLeu1.NW_012099233v1     129471 1201 +    290775 aggttatgctgtgataacaataccaatcctcagtgacttgaaacagcatacgtttatttcttgctgctgctgcatgcccattgtcatccaaccagaagttctgccttgtcatcctcaccccaagatgtggactggcagaacacccaccatctcaaacactcctaggtgctgggaaagaaggaaataataagcatgacaaatagcaaactagcacttagtttccaatcagaagtggcataacag-tttgactcattggtcatttgccaaagcaaatctcatggctacatataacttcaaggtaaggggaaataaaccaatcatgtggcaggaaagggaaccagaaatatctggtggatgataggaatgactactaactgcctctttgcctgcagtcttgaccgattcaaattgattatccatgttgaaccagagtaatcattctaaaatacaaatttgactatgttactcgcttagccaaaaATAATATATAGATTCCCCCTGCAATAAAATGTGGAGCCCAAACTCCTAGATCGGGTTCCTGTTTTCTAGACTTTACCATCCCCACCTCCTAAGGCTCAACTGCCTAGAATCCTGCAAGTTCACAGAACTACCTGCAAGTGCAAGTGTTTGAGCCACACTATGCTCTCTGCCACATTTAGCCTTTGAACGTGCTCCTCCCACTTTTTGGAAGACTCTCCCCTCCGGCTCCTCTCTACCACCAACAAAAAGCACTTCCTATGAAGTAACAGGATCtttttaattgtctacctctcaaagcacacagtaaggaaagtgagggccagggttttggctcacttatcctaaaactcttagtgcctggcatagtatctggcatagtaggtatttaatgaacatttattAcggtcattcctcagtatccccagggaagtagttccaggacttccctcggataccaaaatctgcagatgctgaagttccaaagttgagctcgcagaactcacagatacaaaaagtcggttctcacatccatgagtttagcatcctgagaatattgtattttcaattcatgtttgcttgTGGATGCAGAACCTGTGGGAATGGAGGATAGACTATATTTATGGAAAGAAATCCTAGGCCCTGCGTCCTCATGAAAGCATTGGCCT-CCGGTGCAGACTGACAGCAGAGCAGGGCGGA-GCTAGCTCATGG-TTGCAGACCTCTG
i manLeu1.NW_012099233v1   I 433 C 0
s colAng1.NW_012115566v1    2583985 1201 -   3067355 aggttatgctgtgataacaataccaatcctcagtgacttgaaacagcataggtttatttcttgctgctgctgcatgcccactgtcatccaaccagaggttctgccttgtcatcctcaccccaagatgtggactgacagaacacccaccatctcaaacactcctaggtgctgggaaagaaagaaataataagcatgacaaatagcaaactagcacttagtttctcatcagaagtggactaacacttttgactcattggttatttgccaaagcaaatctcatggctacatataacttcaaggtgaggggaaataaaccaatcatgtggcaggaaaaggaaccagaaatatctggtggatgacaggaatgactactaactgcctgtttgcctgcagtcttgaccgattcaaattgattatccatgttgaaccagagtaatcattctaaaacacaaatttgactatgttactcccttagccaaaaataatatatagattccccctgcaataaaatgtggagcccaaactcctagatcggg-tcctgttttctagactttactatccccacctcctaaggctcaactgcctagaatcctgcaagttcacagaactacctgcaagtgcaagtgtttgagccacaccaggctctctgccacctttagcctttgaacgtgctcctctctctttttggaagactctcccctccagctcctcTCTACCACCAACAAAAAGCACTTCCCGTGAAGTAACAGGATCTTTTTAATTGTCTACCTCTCAAAGTACACAGTAAAGAAAGTGAGGGATAGGGTTTTGGCTCACTTATCCTAAAACTcttagtgtctggcatagtatctggcatagtaggtatttaatgaacacttattAcagtcatccctaagtatccccagggaagtagttccaggactccccttggataccaaactctgcagatgctgaagttccaaagttgaccttgcagaactcacagatacaaaaagtcggttctcacatccatgagtttagcatcctgagaatattgtattttcaattcatgtttgcttgTGGATGCAGAACCCGTGGGAATGGAGGATAGACTATATTTATGGAAAGAAATCCTAGGCCCTGCGTCCTCATGAAAGCATTGGCCT-CCGGTGCAGGCTGACAGCAGAGCAGGGCGGA-GCTGGCTCATGG-TTGCAGACCTCTG
i colAng1.NW_012115566v1   I 434 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           187717 12069 -    242197 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e aotNan1.NW_018509740v1     254837 9855 -    457564 T
e cebCap1.NW_016107755v1     180194 10511 -   1771730 T
e nomLeu3.chr1a            74568440 10821 + 122973662 T

a score=148015.000000
s hg38.chr6_GL000254v2_alt   842876 40 +   4827813 TGCCAGCCTCCCCTAGACAAGAGCACCGTGTCGAGGAGAA
s panTro5.chr6             29805600 40 + 175400573 TGCCAGCCTCCCCTAGACAAGATCGCCGTGTCGAGGAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30040232 40 + 173848474 TGCCAGCCTCCCCTAGACAAGATCGCCGTGTCGAGGAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5843632 40 +   6154872 TGCCAGCCTCCCCTAGACAAGATCGCCGTGTCGAGGAGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29699513 40 - 170955103 TGCCAGCCTTCCCTAGACAAGGTTGCCGTGTCGAGAAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2745679 40 -   2996164 TGCCAGCCTTCCCTAGACAAGGTTGCCGTGTCGAGAAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     498902 40 +    766320 TGCCAGCCTCCCCTAGACAAGGTTGCCATGTTGAGAAGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28954378 40 -  71996105 TGCCAGCCTTCCCTAGACAAGGTTGCCGTGTCAAGAAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     130672 40 +    290775 TGCCAGCCTCCCCTAGACAAGGTTGCCATGTTGAGAAGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2585186 40 -   3067355 TGCCAGCCTTCCCTAGACAACGTTGCCATGTCGAGAAGAA
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           187717 12069 -    242197 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e aotNan1.NW_018509740v1     254837 9855 -    457564 T
e cebCap1.NW_016107755v1     180194 10511 -   1771730 T
e rheMac8.chr4             30037066 41 + 172585720 I
e nomLeu3.chr1a            74568440 10821 + 122973662 T

a score=1080783.000000
s hg38.chr6_GL000254v2_alt   842916 223 +   4827813 GAAATCGGCTCAAGCTCTGGGCCCATGATGCCTGCTCCTTCCAAAGACTGTGGCAGATTACGCCAACTGGGATCCGGCGGTCGCAAGGTCTAGAGGAGTCAAGAAAGCCATCACCAACGTCGTTCAGCAGGAAGTAAAATCCCTTTGTGTCTTGGAAGCCTCCCAGGTTCCTGCAGAAGAAGCTGTTTCTGGAGGTAGTGAGCCCTATGACATCATCGACAGC
s panTro5.chr6             29805640 223 + 175400573 GAAATCGGCTCAAGCTCTGGGCCCATGATGCCTGCTCCTTCCAAAGACTGTGGCAGATTACGCCAACTGGGATCCGGCGGTCGCAAGGTCTAGAGGAGTCAAGAAAGCCATCACCAACATCGTTCAGCAGGAAGTAAAATCCCTTTGTGTCTTGGAAGCCTCCCAGGTTCCTGCAGAAGAAGCTGTTTCTGGAGCTAGTGAGCCCTATGACATCATCGACAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30040272 223 + 173848474 GAAATCGGCTCAAGCTCTGGGCCCATGATGCCTGCTCCTTCCAAAGACTGTGGCAGATTACGCCAACTGGGATCCGGCGGTCGCAAGGTCTAGAGGAGTCAAGAAAGCCATCACCAACATCGTTCAGCAGGAAGTAAAATCCCTTTGTGTCTTGGAAGCCTCCCAGGTTCCTGCAGAAGAAGCTGTTTCTGGAGCTAGTGAGCCCTATGACATCATCGACAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5843672 223 +   6154872 GAAATCGGCTCAAGCTCTGGGCCCATGATGCCTGCTCCTTCCAAAGACTGTGGCAGATTACGCCAACTGGGATCCGGCGGTCGCAAGGTCTAGGGGAGTCAAGAAAGCCATCACCAACGTCGTTCAGCAGGAAGTAAAATCCCTTTGTGTCTTCGAAGCCTCCCAGGTTCCTGCAGAAGAAGCTGTTTCTGGAGCTAGTGAGCCCTATGACATCATCGACAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30037107 223 + 172585720 GAAATCGGCTCAAGCTCTGGGCCCGCGATGCCTGCTCCTGCCAAAGACTGTGGCAGATTACACCAACTGGGATCCGGCAGTCGCGAGGTCTACAGGAGTCGAGAAAGCCATCACCAATGTCTTTCAGCAGGAAGTAAAATCCCTTTGTGTCTTGGAAGCCTCCCAGGTTCCTGCAGAAGAAGCTGTTTCTGGAGCTGGTGAGCCCTATGACATCACTGACAGC
i rheMac8.chr4             I 41 C 0
s macFas5.chr4             29699553 223 - 170955103 GAAATCGGCCCAAGCTCTGGGCCCGCGATGCCTGCTCCTGCCAAAGACCGTGGCAGATTACACCAACTGGGATCCGGCAGTCGCGAGGTCTACAGGAGTCGAGAAAGCCATCACCAATGTCTTTCAGCAGGAAGTAAAATCTCTTTGTGTCTTGGAAGCCTCCCAGGTTCCTGCAGAAGAAGCTGTTTCTGGAGCTGGTGAGCCCTATGACATCATTGACAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2745719 223 -   2996164 GAAATCGGCCCAAGCTCTGGGCCCGCGATGCCTGCTCCTGCCAAAGACCGTGGCAGATTACACCAACTGGGATCCGGCAGTCGCGAGGTCTACAGGAGTCGAGAAAGCCATCACCAATGTCTTTCAGCAGGAAGTAAAATCTCTTTGTGTCTTGGAAGCCTCCCAGCTTCCTGCAGAAGAAGCTGTTTCTGGAGCTGGTGAGCCCTATGACATCATTGACAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     498942 223 +    766320 GAAATCGGCTCAAGCTCTGGGCCCGCGATTCCTGCTCCTGTCAAAGACTGTGGCAGATTACACCAACTGGGATCCGGCAGTCGCGAGGTCTACAGGAGTCAAGAAAGCCATCATCAATGTCTTTCAGCAGGAAGTAATATCCCTTTGTGTCTTGGAAGCCTCCCAGGTTCCTGCAGAAGAAGCTGTTTCTGGAGCTGGTGAGCCCTATGACATCATTGACAGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28954418 223 -  71996105 GAAATCGGCTCAAGCTCTGGGCCCACGATGCCTGCTCCTGCCAAAGACTGTGGCAGATTACACCAACTGGGATCCGGCAGTCACGAAGTCTACAGGAGTCAAGAAAGCCATCATCAATGTCTTTCAGCAGGAAGTAAAATCCCTTTGTGTCTTGGAAGCCTCCCAGGTTCCTGCAGAAGAAGCTATTTCTGGAGCTGGTGAGCCCTATGACATCATTGACAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     130712 223 +    290775 GAAATCGGCTCAAGCTCTGGGCCCGCGATTCCTGCTCCTGCCAAAGACTGTGGCAGATTACACCAACTGGGATCCGGCAGTCGCGAGGTCTACAGGAGTCAAGAAAGCCATCATCAATGTCTTTCAGCAGGAAGTAATATCCCTTTGTGTCTTGGAAGCCTCCCAGGTTCCTGCAGAAGAAGCTGTTTCTGGAGCTGGTGAGCCCTATGACATCATTGACAGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2585226 223 -   3067355 GAAATTGGCTCAAGCTCTGGGCCCGTGATGCCTGCTCCTGCCAGAGACTGTGGCAGATTACACTAACTGGGATCTGGCAGTCGCGAGGTCTACAGGAGTCAAGAAAGCCATCATCAATGTCTTTCAGCAGGAAGTAAAATCTCTTTGTGTCTTGGAAGCCTCCCAGATTCCTGCAGAAGAAGCTATTTCTGGAGCTGGTGAGCCCTGTGACATCATTGACAGC
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           187717 12069 -    242197 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e aotNan1.NW_018509740v1     254837 9855 -    457564 T
e cebCap1.NW_016107755v1     180194 10511 -   1771730 T
e nomLeu3.chr1a            74568440 10821 + 122973662 T

a score=216899.000000
s hg38.chr6_GL000254v2_alt   843139 30 +   4827813 AGTAACTTGAAGAAGAGCAGACATGGAAGA
s panTro5.chr6             29805863 30 + 175400573 AGTAACTTGAAGAAGAGCAGACATGGAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30040495 30 + 173848474 AGTAACTTGAAGAAGAGCAGACATGGAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5843895 30 +   6154872 AGTAACTTGAAGAAGAACAGACATGGAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30037330 30 + 172585720 AGTAACTTGAAGAAGAACAGACAGGGAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29699776 30 - 170955103 TGTAACTTGAAGAAGAACAGACATGGAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2745942 30 -   2996164 TGTAACTTGAAGAAGAACAGACATGGAAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     499165 30 +    766320 TGTAACTTGAAgaggaacagacatggaaga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28954641 27 -  71996105 TGTAACTT---GAAGAACAGACATGGAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     130935 30 +    290775 TGTAACTTGAAGAAGAACAGACATGGAAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2585449 30 -   3067355 TGTAACTTGAAGAAGAACAGACATGGAAGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           175648 30 -    242197 agtagcttgaggaagaacagacatagaaga
i saiBol1.JH378357         T 12069 C 0
s cebCap1.NW_016107755v1     169683 30 -   1771730 agtagcttgaggaagaacagacatagaaga
i cebCap1.NW_016107755v1   T 10511 C 0
s aotNan1.NW_018509740v1     244982 30 -    457564 agtagcttgaggaagaacagacatagaaga
i aotNan1.NW_018509740v1   T 9855 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e nomLeu3.chr1a            74568440 10821 + 122973662 T

a score=3038726.000000
s hg38.chr6_GL000254v2_alt   843169 396 +   4827813 GAAATCTGCTTTTCACTTTATATTTTTGCCTGT-----------CTTTTAAATGTTACAGCTGTGTGTGCTTTACATATTCAAAATAAATtgtgtgtatgtgtgtgtgtgtgtgtAAATTTTAAGCAGTTAATAGGTTCAAGGCAGAAGTGGCTACAAGTTTATGCCCCAGTAGGAATCAGTTCCAGTGCTCTTCATTAATTGCCAGGCAAAATAGCCATAGTAATGTAGTAACTAGAATAAAATTTAAATTAGGTTAGTTATAAACACCCTATCCATTATCGACTCCCAAAGCTGCTTCATCCATGAATATTTAATATGCCACAAAACTATCAGAGATTGCTAATATATCCCATAATATAATATGAAACCAAAAGATTTTTCAAAAAGCTAAACTTGGGAGAGACT
s panTro5.chr6             29805893 388 + 175400573 GAAATCTGCTTTTCACTTTATATTTTTGCCTGT-----------CTTTTAAAAGTTACAGCTGTGTGTGCTTTACATATTCAAAATAAAT--------TGTGTGTGCGTGTGTGTAAATTTTAAGCAGCTAATAGGTTCAAGGCAGAAGTGGCTACAAGTTTATGCCCCAGTAGGAATCAGTTCCAGTGCTCTTCATTAATTGCCAGGCAAAATAGCCATAGTAATGTAGTAACTAGAATAAAATTTAAATTAGGTTAGTTATAAACACCCTATCCATTATCAACTCCCAAAGCTGCTTCATCCATGAATATTTAATATGCCACAAAACTATCAGAGATTGCTAATATATCCCATAATATAATATGAAACCAAAAGATTTTTCAAAAAGCTAAACTTGGGAGAGACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30040525 388 + 173848474 GAAATCTGCTTTTCACTTTATATTTTTGCCTGT-----------CTTTTAAAAGTTACAGCTGTGTGTGCTTTACATATTCAAAATAAAT--------TGTGTGTGCGTGTGTGTAAATTTTAAGCAGCTAATAGGTTCAAGGCAGAAGTGGCTACAAGTTTATGCCCCAGTAGGAATCAGTTCCAGTGCTCTTCATTAATTGCCAGGCAAAATAGCCATAGTAATGTAGTAACTAGAATAAAATTTAAATTAGGTTAGTTATAAACACCCTATCCATTATCGACTCCCAAAGCTGCTTCATCCATGAATATTTAATATGCCACAAAACTATCAGAGATTGCTAATATATCCCATAATATAATATGAAACCAAAAGATTTTTCAAAAAGCTAAACTTGGGAGAGACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5843925 395 +   6154872 GAAATCTGCTTTTCACTTTATATTTTTGCCTGT-----------CTTTTAAATGTTACAGCTGTGTGTGCTTTACATATTCAAAATAAATtgtgtgtatgtgtgtgcgtgtgtgtAAATTTTAAGCAGCTAATAGGTTCAAGGCAGAAGTGGCTACAAGTTTATGCCCCAGTAGGAATCAGTTCCAGTGCT-TTCATTAATTGCCAGGCAAAATAGCCATAGTAATGTAGTAACTAGAATAAAATTTAAATTAGGTTAGTTATAAACACCCTATCCAGTATCGACTCCCAAAGCTGCTTCATCCATGAATATTTAATATGCCACAAAACTATCAGAGATTGCTAATATATCCCATAATATAATATGAAACCAAAAGATTTTTCAAAAAGCTAAACTTGGGAGAGACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74557619 386 + 122973662 GAGGTGGACTATTCATTATATGTCTTATCTTATTATTTTTGTTACTTTTTAGTTTTGCAACTGTGCGTGTTTTACACATTC-AGATAGGCAGCTAGTATGGGAAGGGATA-GTATAGTTTTTATATAGTCACCA-GCTCAGAATGGAGCTGGCTATAAG-CTATGCACCAATGGGAACCAGTTTCAGTGCTCATCACTAGTTGACAGGCAAAG-GGCCATGAAAAGTTGGTGGCTATAG------------TAGGTTAACTATTGTGATTCTGTGCCTTCCCTACTCCCCAAAATTTATTTTCCACTAATATTTTACATACTGCAAAACTTAGAAACATTGATAATATAGCCCATAATAT-ATCTGAAAGCAAAGAAATTTATAATTAGCTAAAATC---AGAGACC
i nomLeu3.chr1a            T 10821 I 12
s rheMac8.chr4             30037360 392 + 172585720 GAAATCTGCTTTTCACTTTATATTTTTGCCTGT-----------CTTTTAAATGTTACAGCTGTGTGTGCTTTACATATTCAAAATA----GTGTGTATGTGTGTGCATGCGTGTAAATTTTATGCAGCTAATAGACTCAAGACAGAAGTGGCTACAAGTTTATGCCCCTGTAGGAATCAGTTCCAGTGCTCTTCATTAATTGCCAGGCAAAATAGCTATAGTAATGTAGTAACTAGAATAAAATTTAAATTAGGTTAGTTATAAACACCCTATCCATTATCTACTCCCAAAGCTGCTTCATCCATGAATATTTAATATGCCACAAAACTATCAGAGATTGCTAATATATCCCATAATATAATATGAAACCAAAAGATTTTTCACAAAGCTAAACTTGGGAGAGAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29699806 392 - 170955103 GAAATCTGCTTTTCACTTTATATTTTTGCCTGT-----------CTTTTAAATGTTACAGCTGTGTGTGCTTTACATATTCAAAATA----gtgtgtatgtgtgtgcatgtgtgtAAATTTTAAGCAGCTAATAGACTCAAGACAGAAGTGGCTACAAGTTTATGCCCCAGTAGGAATCAGTTCCAGTGCTCTTCATTAATTGCCAGGCAAAATAGCTATAGTAATGTAGTAACTAGAATAAAATTTAAATTAGGTTAGTTATAAACACCCTATCCATTATCTACTCCCAAAGCTGCTTCATCCATGAATATTTAATATGCCACAAAACTATCAGAGATTGCTAATATATCCCATAATATAATATGAAACCAAAAGATTTTTCAAAAAGCTAAACATGGGAGAGAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2745972 392 -   2996164 GAAATCTGCTTTTCACTTTATATTTTTGCCTGT-----------CTTTTAAATGTTACAGCTGTGTGTGCTTTACATATTCAAAATA----gtgtgtatgtgtgtgcgtgtgtgtAAATTTTAAGCAGCTAATAGACTCAAGACAGAAGTGGCTACAAGTTTATGCCCCGGTAGGAATCAGTTCCAGTGCTCTTCATTAATTGCCAGGCAAAATAGCTATAGTAATGTAGTAACTAGAATAAAATTTAAATTAGGTTAGTTATAAACACCCTATCCATTATCTACTCCCAAAGCTGCTTCATCCATGAATATTTAATATGCCACAAAACTATCAGAGATTGCTAATATATCCCATAATATAATATGAAACCAAAAGATTTTTCAAAAAGCTAAACATGGGAGAGAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     499195 391 +    766320 gaaatctgcttttcactttatatttttgcctgt-----------cttttaaatgttacagctgtgtgtgctttacatattcaaaaTA----GTGTGTATGTGTGTGCATGCGTGTAAATTTTAAGCAGCTAATAGACTCAAGACAGAAGTGGCTACAAGTTTATGCCCCAGTAGGAATCAGTTCCAGTGCTCTTCATTAATTGCCAGGCAAAATAGCTATAGTAACGTAGTAACTAGAATAAAATTTAAATTAGGTTAGTTATAAACACCCTATCCATTACCTACTCCCAAAGCTGCTTCATCCATGAATATTTAATATGCCACAAAACTATCAGAGATTGCTAATATATCCCATAATATAATATGAAACCAAAAG-TTTTTCAAAAAGCTAAACATGGGAGAGAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28954668 392 -  71996105 GAAATCTGCTTTTCACTTTATATTTTTGCCTGT-----------CTTTTAAATGTTACAGCTGTGTGTGCTTTACATATTCAAAATA----gtgtgtatgtgtgtgcgtgtgtgtAAATTTTAAGCAGCTAATAGACTCAAGACAGAAGTGGCTACAAGTTTATGCCCCCGTAGGAATCAGTTCCAGTGCTCTTCATTAATTGCCAGGCAAAATAGCTATAGTAATGTAGAAACTAGAATAAAATTTAAATTAGGTTAGTTATAAACACCCCATCCATTATCTACTCCCAAAGCTGCTTCATCCATGAATATTTAATATGTCACAAAACTATCAGAGATTGCTAATATATCCCATAATATAATATGAAACCAAAAGATTTTTCACAAAGCTAAACTTGGGAGAGAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     130965 391 +    290775 GAAATCTGCTTTTCACTTTATATTTTTGCCTGT-----------CTTTTAAATGTTACAGCTGTGTGTGCTTTACATATTCAAAATA----GTGTGTATGTGTGTGCATGCGTGTAAATTTTAAGCAGCTAATAGACTAAAGACAGAAGTGGCTACAAGTTTATGCCCCAGTAGGAATCAGTTCCAGTGCTCTTCATTAATTGCCAGGCAAAATAGCTATAGTAACGTAGTAACTAGAATAAAATTTAAATTAGGTTAGTTATAAACACCCTATCCATTACCTACTCCCAAAGCTGCTTCATCCATGAATATTTAATATGCCACAAAACTATCAGAGATTGCTAATATATCCCATAATATAATATGAAACCAAAAG-TTTTTCAAAAAGCTAAACATGGGAGAGAAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2585479 390 -   3067355 GAAATCTGCTTTTCACTTTATATTTTTGCCTGT-----------CTTTTAAATGTTACAGCTGTGTGTGATTTACATATTCAAAATA----GTGTGTGTGTGCGTGCAT--GTGTAAATTTTAAGCAGCTAATAGACTCAAGACAGAAGTGGCTACAAGTTTATGCCCCAGTAGGAATCAGTGCCAGTGCTCTTCATTAATTGCCAGGCAAAATAGCTATAGTAATGTAGTAACTAGAATAAAATTTAAATTAGGTTAGTTATAAACACCCCATCCATTATCTACTCCCAAAGCTGTTTCATCCATGAATATTTAATATGCCACAAAACTATCAGAGATTGCTAATATATCCCATAATATAATATGAAACCAAAAGATTTTTCAGAAAGCTAAACTTGGGAGAGAAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           175678 369 -    242197 taaatctgcttctcactttatatttttgcctgt-----------cttttaaatgttagagctgtgcatgctttacatattcaaaataaatTGTGTGTATATGTGTGCATCTGTGTAAATTTTAAGCAGCTAATAGTATCAAGACAGAAGTGGCTACAAGTTTATGCCCCAATAGGAATCCGTTCCAGTGCTCTTCATTAACCGCCAGGCAAAATAGCTATAGTAATG--------------------------GGTTAGTTATAAACACTCTACCCATTATCTACTCTCAAAGCTGCTTCATCCATAAATATTTTATATGCCACAAAACTATCAGGGATTGCTAATATATCCCATAATATAACATAAAACCAAAAGA-TTTTCAAAAAGCTAAACTTGGGCGAGAAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     169713 369 -   1771730 ggaatctgcttttcactttatatttttgcctgt-----------cttttaaatgttagagctgtgcatgctttacatattcaaaataaatTGTGTGTATATGTGTGCATCTGTGTAAATTTTAAGCAGCTAATAGTCTCAAGACAGAGGTGGCTACAAGTTTATGCCCCAGTAGGAATCTGTTCCAGTGCTCTTCATTAATTGCCAGGCAAAATAGCCATAGTAATG--------------------------GGTTAGTTATAAACACTATACCCATTATCTACTCTCGAAGCTGCTTCATCCATAAATATTTTATATGCCGCAAAACTATCAGGGATTGCTAATATATCCCATAATATAACATAAAACCAAAAGA-TTTTCGAAAAGCTAAACTTGGGAGAGAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     245012 369 -    457564 gaaatctgcttctcactttatatttttgcctgt-----------cttttaaacgttagagctgtgcatgctttacatattcaaaataaatTGTGTGTATATGTGTGCATCTGTGTAAATTTTAAGCTGCTAATAGGCTCAAGACAGAAGTGGCTACAAGTTTATGCCCCAGTAGGAATCAGTTCCAGTGCTCTTCATTAATTGCCAGGCAAAATAGCCATAGTAATG--------------------------GATTAGCTATAAACACTCTACCCATTATCTACTCTCAAAGCTGCTTCATCCATAAATATTTGGTATGCCACATAACTATCAGGGATTGCTAATATATCCCATAATATAACATAAAACCAAAAGA-TTTTCAAAAAGCTAAACTTGGGAGAGAAT
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            17736 6010 +  18854210 T

a score=44694.000000
s hg38.chr6_GL000254v2_alt   843565 6 +   4827813 CATAGC
s panTro5.chr6             29806281 6 + 175400573 CATAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30040913 6 + 173848474 CATAGC
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30037752 6 + 172585720 CATAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29700198 6 - 170955103 CATAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2746364 6 -   2996164 CATAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     499586 6 +    766320 CATAGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28955060 6 -  71996105 CATAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     131356 6 +    290775 CATAGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2585869 6 -   3067355 CATAGC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           176047 6 -    242197 CATAGC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     170082 6 -   1771730 CATAGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     245381 6 -    457564 CATAGC
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e nomLeu3.chr1a            74558005 12 + 122973662 I
e gorGor5.CYUI01015250v1    5844320 0 +   6154872 C

a score=1055980.000000
s hg38.chr6_GL000254v2_alt   843571 128 +   4827813 AAAATGACATGTAATTCTGAGGTCATCACTGAGTATGGTACTTGAGTCTATCGCC-ACATGTGAAAAGCATCTG-------AATATAATCCAAAAAGCTATTGCAGTCATGGGCTGCAGAATAATGCGGTGGCCAA
s panTro5.chr6             29806287 128 + 175400573 AAAATGACATGTAATTCTGAGGTCATCACTGAGTATGGTACTTGAGTCTGTCGCC-ACATGTGAAAAGCATCTG-------AATATAATCCAAAAAGCTATTGCAGTCATGGGCTGCAGAATAATGCGGTGGCCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30040919 128 + 173848474 AAAATGACATGTAATTCTGAGGTCATCACTGAGTATGGTACTTGAGTCTGTCGCC-ACATGTGAAAAGCATCTG-------AATATAATCCAAAAAGCTATTGCAGTCATGGGCTGCAGAATAATGCGGTGGCCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5844320 128 +   6154872 AAAATGACATGTAATTCTGAGGTCATCACTGAGTATGGTACTTGAGTCTATAGCC-ACATGTGAAAAGCATCTG-------AATATAATCCAAAAATCTATTGCAGTCATGGGCTGCAGAATAATGCGGTGGCCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74558017 135 + 122973662 AAAAAAAAAAGTAATTCTGAGACAATTGCTGAACCTGATACTTGGGACTGATGTCAATGTGCAAAAATTGTCCGACCTGACAAAGCAACTGGAATAACTAATGCAGTCACAGG-TGCAGGATGATGTGTTGACCAA
i nomLeu3.chr1a            I 12 I 7773
s rheMac8.chr4             30037758 128 + 172585720 AAAATGACATGTAATTCTGAGATCATCATTGAGTATGGTACTTGAGTCTATAGCC-ACATGTGAAAACCATCTG-------AATATAATCCAAAAAGCTATTGCAGTCATGGGCTGCAGAATAATGTGGTGGCCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29700204 128 - 170955103 AAAATGACATGTAATTCTGAGATCATCATTGAGTATGGTACTTGAGTCTATAGCC-ACATGTGAAAACCATCTG-------AATATAATCCAAAAAGCTATTGCAGTCATGGGCTGCAGAATAATGTGGTGGCCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2746370 128 -   2996164 AAAATGACATGTAATTCTGAGATCATCATTGAGTATGGTACTTGAGTCTATAGCC-ACATGTGAAAACCATCTG-------AATATAATCCAAAAAGCTATTGCAGTCATGGGCTGCAGAATAATGTGGTGGCCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     499592 128 +    766320 AAAATGACATGTAATTCTGAGATCATCATTGAGTATGGTACTTGAGTCTATAGCC-ACATGTGAAAACCATCTG-------AATATAATCCAAATAGCTATTGTAGTCATGGGCTGCAGAATAATGTGGTGGCCAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28955066 128 -  71996105 AAAATGACATGTAATTCTGAGATCATCATTGAGTATGGTACGTGAGTCTATAGCC-ACATGTGAAAACGATCTG-------AATATAATCCAAAAAGCTATTGCAGTCATGGGCTGCAGAATAATGTGGTGGCCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     131362 128 +    290775 AAAATGACATGTAATTCTGAGATCATCATTGAGTATGGTACTTGAGTCTATAGCC-ACATGTGAAAACCATCTG-------AATATAATCCAAAGAGCTATTGTAGTCATGGGCTGCAGAATAATGTGGTGGCCAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2585875 128 -   3067355 AAAATGACATGTAATTCTGAGATCATCATTGAGTATAGTACTTGAGTCTATAGCC-ACATGTGAAAACCATCTG-------AATATAATCCAAAAAGCTATTGCAGTCATGGGCTGCAGAATAATGTGGTGGCCAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           176053 128 -    242197 AAAATGTCATGTAATTCTGAGATCATCACTGAGTTTGGTACTTGAGTCTACGGTC-ACATGTGAAAAGCATTTG-------AATATAATCTGAAAAGCTAATGCAGTCATGGGCTGCAGAATAATGTGGTGGCCAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     170088 128 -   1771730 AAAATGCCATGTAATTCTGAGATCATCACTGAGTTTGGTACTTGAGTCTACAGTC-ACGTGTGAAAAGTATTTG-------AATACAATCCAAAAAGTTAATGCAGTCATGGGCTGCAGAATAATGTGGTGGCCAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     245387 128 -    457564 AAAATGTCATGTAATTCTGAGATCATCACTGAGTTTGGTACTTGAGTCTACAGTC-ACATGTGAAAAGCATTTG-------AATATAATCCAAAAAGCTAATGCAGTCATGGGCTGCAGAATAATGTGGTGGCCAA
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            17736 6010 +  18854210 T

a score=6389851.000000
s hg38.chr6_GL000254v2_alt   843699 845 +   4827813 GAGGCtgtaatattgtgatataataagatatacatatttggcctttgatcccagttcctggcacagagttcctaaggcccttgtaattccctgagcaataggggtgctaggagagtcttttgttctaatatttggtctttgaccaaatatgtcagttcctaacattgagctctaat-cccttggaatttcctgggtaacaggagcatcttttgttctaatgaggtgaccccttgggggacccctgaatggggactctgactagaaggaccaagccatgattagaagtttgaaactttcagctctaccctcatcttccagaaaatcgagagtggctagacattgagttaataatcaactatatctatttgatgaagcctccacaaaaatccctgaactacagagctccgagaacttccaggctggtgcacacacagaaatgctgagagggcagcatgccccagaagctctgtaacccttcccacacaccttttcctgtacatctcttctattttgttgttcatttgtatcctttggaatatcctctataataaactggtaaattgaactaaagagctttcatgtattctgtgaactgctctaataaatcatcaaacccaaggaggggattgtgggaacccccagtagggttcccagtaggtcagaagttccagaagcttggacttgtgattggcatctgaagtggggagcagccttatgggatcctttaacctgtgggatctcactgtatctccaggtgaataatgtcagaagtgaattgaattgaattataggacaccaagttggtgtccactgaaga-atgtattggtcagtctggaagaaaaacc
s panTro5.chr6             29806415 845 + 175400573 GAGGCtgtaatactgtgatataataagatatacatatttggcctttgatcccagttcctggcacagagttcctaaggcccttgtaattccctgagcaataggggtgctaggagagtcttttgttctaatatttggtctttgaccaaatatgtcagttcctaacattgagctctaat-cccttggaatttcctgggtaacaggagcatcttttgttctaatgaggtgaccccttggtggacccctgaatggggactctgactagaaggaccaagccatgattagaagtttgaaactttcagctctaccctcatcttccagaaaatcgagagtggctagacattgagttaataatcaactatacctatttgatgaagcctccacaaaaatccctgaactacagagctccgagaacttccaggctggtgcacacacagaaatgctgagagggaagcatgccccagaagctctgtaacccttcccacacaccttttcctgtacatctcttctattttgttgttcatttgtatcctttggaatatcctttataataaactggtaaattgaactaaagagctttcatgtattctgtgaactgctctaataaatcatcaaacccaaggaggggattgtgggaacccccaatagggttcccagtaggtcagaagttccagaagcttggacttgtgattggcatctgaagtggggagcagtcttatgggatcctttaacctgtgggatctcactgtatctccaggtgaataatgtcagaagtgaattgaattgaattataggacaccaagttggtgtccactgaaga-atgtattggtcagtctggaagaaaaacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30041047 845 + 173848474 GAGGCtgtaatactgtgatataataagatatacatatttggcctttgatcccagttcctggcacagagttcctaaggcccttgtaattccctgagcaataggggtgctaggagagtcttttgttctaatatttggtctttgaccaaatatgtcagttcctaacattgagctctaat-cccttggaatttcctgggtaacaggagcatcttttgttctaatgaggtgaccccttggtggacccctgaatggggactctgactagaaggaccaagccatgattagaagtttgaaactttcagctctaccctcatcttccagaaaatcgagagtggctagacattgagttaataatcaactatacctatttgatgaagcctccacaaaaatccctgaaccacagagctccgagaacttccaggctggtgcacacacagaaatgctgagagggaagcatgccccagaagctctgtaacccttcccacacaccttttcctgtacatctcttctattttgttgtttatttgtatcctttggaatatcctttataataaactggtaaattgaactaaagagctttcatgtattctgtgaactgctctaataaatcatcaaacccaaggaggggattgtgggaacccccaatagggttcccagtaggtcagaagttccagaagcttggacttgtgattggcatctgaagtggggagcagtcttatgggatcctttaacctgtgggatctcactgtatctccaggtgaataatgtcagaagtgaattgaattgaattataggacaccaagttggtgtccactgaaga-atgtattggtcagtctggaagaaaaacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5844448 845 +   6154872 GAGGCtgtaatattgtgatataataagatatacatatttggcctttgatcccagttcctggcacagagttcctaaggcccttgtaattccctgagcaataggggtgctaggagagtcttttgttctaatatttggtctttgaccaaatatgtcagttcctaacattgagctctaat-cccttggaatttcctgggtaacaggagcatcttttgttctaatgaggtgaccccttggtggacccctgaatggggactctgactagaaggaccaagccatgattagaagtttgaaactttcagctctaccctcatcttccagaaaatcgagagtggctagacattgagttaataatcaactatacctatttgatgaagcctccacaaaaatccctgaactacggagctccgagaacttccaggctggtgcacacacagaaatgctgagagggcagcatgccccagaagctctgtaacccttcccacacaccttttcctgtacatctcttctattttgttgttcatttgtatcctttggaatatcctttataataaactggtaaattgaactaaagagctttcatgtattctgtgaactgctctaataaatcatcaaacccaaggaggggattgtgggaacccccaataaggttcccagtaggtcagaagttccagaagcttggacttatgattggcatctgaagtggggagcagtcttatgggatcctttaacctgtgggagctcactgtgtctccaggtgaataatgtcagaagtgaattgaattgaattataggacaccaagttggtgtccactgaaga-atgtattggtcagtctggaagaaaaacc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30037886 845 + 172585720 GAGGCtgtgatattgtgatataataagaaatacatatttggcctttgatcccagttcctggcacagagttcctaaggcccttgtaattccctgagcaataggagtgctaggagagtcttttgttctaatatttggtctttgagcaaatatgtcagttcctaacattgagctctaat-cccttggaatttcctgggtaacagaagcatcttttgttctaatgaggtgaccccttggtgggcccctgaatggggactctgactggaaggaccaagccatgattagaagtttgaaacttccagctctaccctcatcttccagaaaatcgagaggggctagacattgagttaataatcaactatacctatttgaagaagcctccacaaaaatccctgaactacggagctcagagaacttccaggttggtgaacacacagaagtgctgagagggcggcatgccccagaagctctgtgccccttcccacataccttttcctgtgcatctcttctatttcattgttcatctgtatcctttggaatatcctttataataaactggtaaattgaagtaaagagctttcatgtattctgtgaactgctctaataaatgatcaaacccaaggaggggattgtgggaacccccaataggattcccagtaggtcagaagttccagaagcttggacttgtgattggcatctgaagtgggaagcagtcttacgggatcctttaatctgtgcgatctcactctatctccaggtgaataatatcagaggtgaattgaattgaactataggacacctaattggtatccactggaga-atatattggtcagtctgggagaaaaacc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29700332 845 - 170955103 GAGGCtgtgatattgtgatataataagaaatacatatttggcctttgatcccagttcctggcacagagttcctaaggcccttgtaattccctgagcaataggagtgctaggagagtcttttgttctaatatttggtctttgagcaaatatgtcagttcctaacattgagctctaat-cccttggaatttcctgggtaacagaagcatcttttgttctaatgaggtgaccccttggtgggcccctgaatggggactctgactggaaggaccaagccatgattagaagtttgaaactttcagctctacactcatcttccagaaaatcgagaggggctagacattgagttaataatcaactatacctatttgaagaagcctccacaaaaatccctgaactacggagctcagagaacttccaggttggtgaacacacagaagtgctgagagggcggcatgccccagaagctctgtgccccttcccacataccttttcctgtgcatctcttctatttcattgttcatctgtatcctttggaatatcctttataataaactggtaaattgaagtaaagagctttcatgtattctgtgaactgctctaataaatgatcaaacccaaggaggggattgtgggaacccccaataggattcccagtaggtcagaagttccagaagcttggacttgtgattggcatctgaagtgggaagcagtcttatgggatcctttaatctgtgcgatctcactctatctccaggtgaataatatcagaggtgaattgaattgaactataggacacctaattggtatccactggaga-atatattggtcagtctgggagaaaaacc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2746498 845 -   2996164 GAGGCtgtgatattgtgatataataagaaatacatatttggcctttgatcccagttcctggcacagagttcctaaggcccttgtaattccctgagcaataggagtgctaggagagtcttttgttctaatatttggtctttgagtaaatatgtcagttcctaacattgagctctaat-cccttggaatttcctgggtaacagaagcatcttttgttctaatgaggtgaccccttggtgggcccctgaatggggactctgactggaaggaccaagccatgattagaagtttgaaactttcagctctaccctcatcttccagaaaatcgagaggggctagacattgagttaataatcaactatacctatttgaagaagcctccacaaaaatccctgaactactgagctcagagaacttccaggttggtgaacacacagaagtgctgagagggcggcatgccccggaagctctgtgccccttcccacatacattttcctgtgcatctcttctatttcattgttcatctgtatcctttggaatatcctttataataaactggtaaattgaagtaaagagctttcatgtattctgtgaactgctctaataaatgatcaaacccaaggaggggattgtgggaacccccaataggattcccagtaggtcagaagttccagaagcttggacttgtgattggcatctgaagtgggaagcagtcttatgggatcctttaatctgtgggatctcactctatctccaggtgaataatatcagaggtgaattgaattgaactataggacacctaattggtatccactggaga-atatattggtcagtctgggagaaaaacc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     499720 845 +    766320 GAGGCtgtgatattgtgatataataagaaagacatatttggcctttgatcccagttcctggcacagagttcctaaggcccttgtaattccctgagcaataggggtgctaggagagtcttttgttctaatatttggtctttgaccaaatatgtcagttcctaacattgagctctaat-cccttggaatttcctgggtaacaggagcatcttttgttctaatgaagtgaccccttggtgggcccctgaatggggactctgactggaaggaccaagccatgattagaagtttgaaactttcagctctaccctcatcttccagaaaatcgagaggggctagacattgagttaataatcaactatacctatttgaagaagcctccacaaaaatccctgaactatggagctcagagaacttccaggttggtgaacacacagacgtgctgagagggcggcatgccccggaagctctgtgcccctttccacataccttttcctgtgcatctcttctatttcattgttcatctgtatccttcggaatatcctttataataaactcgtaaattgaagtaaagagctttcatgtattctgtgaactgctctaataaatgatcaaacccaaggaggggattgtgggaacctccaataggattcccagtaggtcagaagttccagaagcttggacttgtgattggcatctgaagtggggagcagtcttacgggatcctttaatctgtgggatctcactctatctccaggtgaataatatcagaagtgaattgaattgaactataggacacctaattggtacccactgaaga-atatattggtcagtctgggagaaaaacc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28955194 844 -  71996105 GAGGCtgtgatattgtgatataataagaaatacatatttggcctttgatcccagttcctggcacagagttcctaaggcccttgtaattccctgagcaataggggtgctaggagagtcttttgttctaatatttggtctttgaccaaatatgttagttcctaacattgagctctaat-cccttggaatttcctgggtaacaggagcatcttttgttctaatgaggtgaccccttggtgggcccctgaatagggactctgactggaaggaccaagccatgattagaagtttgaaactttcagctttaccctcatcttccagaaaatcgagaggggctagacattgagttaataatcaactatacctatttgaaaaagcctccacaaaaatccctgaactacggagctcagagaactttcaggttggtgaacacacagaagtgctgagagggcggcatgccccggaagttctgtgccccttcccacatactttttcctgtgcatctcttatatttcgttgttcatctgtatccttcggaatatccttcataataaactggtaaattgaagtaaagagctttcatatattctatgaactgctctaataaatgatcaaacccaaggagggg-ttgtgggaacctccaatagggttcccagtaggtcagaagttccagaagcttggacttgtgattggcatctgaagtggggagcagtcttattggatcctttaatctgtgggatctcactctatctccaggtgaataatatcagaagtgaattgaattgaattataggacacctaattggtgtccactgaaga-atttattggtcagtctgggagaaaaacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     131490 845 +    290775 GCGGCtgtgatattgtgatataataagaaatacatatttggcctttgatcccagttcctggcacagagttcctaaggcccttgtaattccctgagcaataggggtgctaggagagtcttttgttctaatatttggtctttgaccaaatatgtcagttcctaacattgagctctaat-cccttggaatttcctgggtaacaggagcatcttttgttctaatgaagtgaccccttggtgggcctctgaatggggactctgactggaaggaccaagccatgattagaagtttgaaactttcagctctaccctcatcttccagaaaatcgagaggggctagacattgagttaataatcaactatacctatttgaagaagcctccacaaaaatccctgaactatggagctcagagaacttccaggttggtgaacacacagacgtgctgagagggcggcatgccccggaagctctgtgcccctttccacataccttttcctgtgcatctcttctatttcattgttcatctgtatccttcggaatatcctttataataaactcgtaaattgaagtaaagagctttcatgtattctgtgaactgctctaataaatgatcaaacccaaggaggggattgtgggaacctccaataggattcccagtaggtcagaagttccagaagcttggacttgtgattggcatctgaagtggggagcagtcttacgggatcctttaatctgtgggatctcactctatctccaggtgaataatatcagaagtgaattgaattgaactataggacacctaattggtacccactgaaga-atatattggtcagtctgggagaaaaacc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2586003 844 -   3067355 GAGGCtgtgatattgtgatataagaagaaatacatatttggcctttgatcccagttcctggcacagagttcctaaggtccttgtaattccctgagcaataggggtgctaggagagtcttttgttctaatatttggtctttgaccaaatatgtcagttcctaacattgagctctaat-cccttggaatttcctgggtaacaggagcatcttttgttctaatgaggtgaccccttggtgggcccctgaatggggactgtgactggaaggaccaagccatgattagaagtttgaagctttcagctctaccctcatcttccagaaaatcaagaggggctagacattgagttaataatcaactatacctatttgaagaagcctccacaaaaatccctgaactatggagctcagagaacttccaggttggtgaacacacagaagtgctgagagggcggcatgccccggaagctctgtggcccttcccacatgcctattcctgtgcatctcttctatttcgttgttcatctgtatccttcggaatatcctttataataaactggtaaattgaagtaaagagctttgatatattctgtgaactgctctaacaaatgatcaaacccaaggaggggattgtgggaacccccaatagggctcccactaggtcagaagttccagaagcttggacttgtgattggcatctaaagtagggaacagtcttattggatcctttaatccgtgggaactcactctatctccaggtgaataatgtcagaagtgaattgaattgaattataggacacctaattggtgtccactgaaga-atttattggtcagtct-ggagaaaaacc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           176181 833 -    242197 GAGGCtgtggtattatgatatgctaagaaatatatatttggcctctgatcccagttcctggcacacagttcctaaggcccttgtaatttcctgagcaataggggtgctaggagagta-tttgtcctaaca-------tttgaccaaatatgtcagttcctaacattgagctctaatccccttgaagtttcctgggtaataggagcatcttttgttctaatgaagtga-cccttggtggactcctgaagggggacttttattggaagtaccaagccacgattaggagttttaaactttcagctccaccctcatcttccagaaaatcaagagggactacacactgagttcataatcagttatgcctattcgatgaagcctccacaaaaatccctgaactatggagctcagagaaattccaggttggtgcacacacagaagtgctgagagggcagcatgccccagaagctctctgccccttcccacacaccttgtcctgtgtatctcttctatttggctgttcatctgtatcctttggaatattctttataataaacagataaattgaagtaaagaaacttcacttactctgtaaagtgctctaataaattatcaaacccaaggaggggattgtcagaacccccaatagggttcccagtaggtcagaagttccagaggcttggacttgtgattggcatctgaagtggggagcagtcttatgcgatcctttaacctgtgggatctgactctaactccaggtgaataatgtca-----gaattgaattgaagtacaggacacccagttggtatccagtgaagacatttattgttcagtgtgggagaaaaacc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     170216 833 -   1771730 GAGGCtgtgatattatgatatgctaagaaatatatatttggcctctgatcccagttcctggcacacagttcctaaggcccttgtaatttcctgagcaataggggtgctaggagagta-tttgtcctaaca-------tttgaccaaatgtgtcagttcctaacattgagctctaatccccttgaagcttcctgggtaataggagcatcttttgctctaatgaagtga-cccttggtggacccctaaagggggactcttatcggaagtaccaagccatgattaggagtttgaaactttcagctccaccctcatcttccagaaaattgagaggcgccagacattgagttgataatcagttatgcctattcaatgaagcctccacaaaaatccctgaactatggagctcagagaaattccaggttggtgcacacacagaagtgctgagagggcagcatgccccagaagctctctgccccttcccatacaccttgtcctgtgcatctcttctatttggctgttcatctgcatcctttggaatatcctttataataaacagataaattgaagtaaagagacttcacgtattctgcaaagtgctctaataaactatcaaacccaaggaggggattgttggaaccctcagtagggttcccagtaggtcagaatttccagagacttggacttgtgattggtatctgaagtggggagcagtcttacgcaatcctttaacctgtgggatctgactctaactccacgtgaataacatca-----gaattgaattgaattataggacacccagttggtgtccactgaagaaatttattgttcagtgtgagagaaaaacc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     245515 835 -    457564 GAGGCtgtagtattatgatatgctaagaaatatatatttggcctctgatcccagttcctggcacacagttcctaaggcccttgtaattttctgagcaataggggtgctaggagagta-tttgtcctaaca-------tttgaccaaatatgtcagttcctaacattgagctctaatccccttgaagtttcctgtgtaataggagca---tttgttctaatgaagtga-cccttggtggacccctgaagggggactcttatcagaagtaccaagccatgattaggagtttgaaactttcagctccaccctcatcttccagaaaatcgagaggggctagacattgagttaataatcagttatgcctattcgatgaagcctccacaaaaatccctgaactatggagctcagagaaattccatgttggtgcacacacagaagtgctgagagggcggcatgccccagaagctctgggccccttcccacacaccctgtcctgtgcatctcttctatttgggtgttcacctgtatccttaagaatacccgttataataaacagataaattgaagtaaagaaacttcacgtattctttgaagtgctctaataaattatcaaacccaaggagaggactgtcggaacccccaatagggttcccagtaggtcagaagttccagaggcttggacttgtgattggcatctgaagtggggagcagtcttatgcgatcctttaacctgtgggatctgactctaactccaggtgaataacatcagaattgaattgaattgaattataggacacccagttggtgtccactgaagaaatttattgttcagtgtgggagaaaaacc
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=43043.000000
s hg38.chr6_GL000254v2_alt   844544 8 +   4827813 aacatgtt
s panTro5.chr6             29807260 8 + 175400573 aacatgtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30041892 8 + 173848474 aacatgtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5845293 8 +   6154872 aacatgtt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30038731 8 + 172585720 aatatgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29701177 8 - 170955103 AATATGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2747343 8 -   2996164 AATATGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     500565 8 +    766320 aatatgtt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28956038 8 -  71996105 aacacgtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     132335 8 +    290775 AATATGTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2586847 8 -   3067355 aatatgtt
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     246350 8 -    457564 aacatgtt
i aotNan1.NW_018509740v1   C 0 I 86
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           177014 0 -    242197 C
e otoGar3.GL873550            17736 6010 +  18854210 T
e cebCap1.NW_016107755v1     171049 0 -   1771730 C
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=1474351.000000
s hg38.chr6_GL000254v2_alt   844552 329 +   4827813 ggccgggcgcggtggctcagccctgtaatcccagcactttgggaggctgaggcgggcggatcacaaggtcaggagatcaagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaatcagccaggcatggtggcagatgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccaggaggcagagcttgcagtgagccgagatcgcgctactgcactcc-aacctgggcaacagagcaagacttccatctc-aaaaaaTaataa-aataaaacaaaacaaaataaaataaaataaaaa---------------cg
s panTro5.chr6             29807268 324 + 175400573 ggccgggcgcggtggctcagccctgtaatcccagcactttgggaggctgaggcgggcggatcacaaggtcaggagatcaagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaatcagccaggcatggtggcagacgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccaggaggcagagcttgcagtgagccgagatcgcgctactgcactcc-aacctgggcaacagagcaagacttccatctc-aaaaaaTaataa-aat-----aaaacaaaataaaataaaataaaaa---------------cc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30041900 324 + 173848474 ggccgggcgcggtggctcagccctgtaatcccagcactttgggaggctgaggcgggcggatcacaaggtcaggagatcaagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaatcagccaggcatggtggcagacgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccaggaggcagagcttgcagtgagccgagatcgcgctactgcactcc-aacctgggcaacagagcaagacttccatctc-aaaaaaTaataa-aat-----aaaacaaaataaaataaaataaaaa---------------cc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5845301 323 +   6154872 ggccaggcacggtggctcagccctgtaatcccagcactttgggaggctgaggcgggcggatcacaaggtcaggagatcaagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaatcagccaggcatggtggcagacgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaa-ccgggaggcagagcttgcagtgagctgagatcgcgccactgcactcc-aacctgggcaacagagcaagactcccatctc-aaaaaaTaataa-aat-----aaaacaaaataaaataaaataaaaa---------------cc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30038739 326 + 172585720 ggccaggcgcggtggctcagccttttaatcccagcacgttaggaggtcaaagcaggcagatcacgaagtcaggaaatcgagaccatcctggctaacaaggtgaaaccctgtctctactaaaaatacaaaaaattagcagggtgtggtggcgggcgcctgtagtcccagctactcgggagactgaagcaggagaatggcgggaacctgggaggcagagcttgcagtgagccgagatcgcgccactgcactccaagcctaggcaacagagcaaaactcccatctc-aaaaaaaaaCAATaat-----aaaataaaataaaataaaataaaac---------------cc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29701185 323 - 170955103 ggccaggcgcggtggctcagccttgtaatcccagcacgttaggaggccaaagcaggcggatcacgaagtcaggaaatcgagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaattagcagggtgtggtggcgggcgcctgtagtcccagctactcgggagactgaagcaggagaatggcgtgaacctgggaggcagagcttgcagtgagccaagatcgcgccactgcacttc-agcctaggcaacagagcaaaactcccatctc-aaaaaaaaataacaat-------aataaaataaaaTAAAATAAAAC---------------CC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2747351 328 -   2996164 ggccaggcgcggtggctcagccttgtaatcccagcacgttaggaggccaaagcaggcggatcacgaagtcaggaaatcgagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaattagcagggtgtggtggcgggcgcctgtagtcccagctactcgggagactgaagcaggagaatggcgtgaacctgggaggcagagcttgcagtgagccgagatcgcgccactgcactcc-agcctaggcaacagagcaaaactcccatctc-aaaaaaaaaTAACAAT--aataaaataaaataaaataaaataaaaC---------------CC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     500573 328 +    766320 ggccaggcgcggtggctcagccttgtaatcccagcacgttaggaggccaaagcaggcggatcacgaagtcaggaaatcgagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcaggcccctgtagtcccagctactcgggagactgaagcgggagaatggcgtgaacctgggaggcagagcttgcagtgagccaagatcgcgccactgcactcc-agcctaggcaacagagcaaaactcccatctc-aaaaaaaaataacaaT--aataaaataaaataaaataaaataaaac---------------cc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28956046 338 -  71996105 ggccaggcgcggtggctcagctctgtaatcccagcactttgggaggccaaagcaggcggatcatgaggtcaggaaatcgagaccatcctggctaataaggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggtgggcgcctgtagtcccagctactcgggagactgaagcaggagaatggcgtgaacctgggaggcagagcttgcagtaagccgagatcgcaccactgcactcc-agcctgggcgacagagcaaaactcccatctc-aaaaaaaaaTAACAAT--aataaaataaaataaaataaaataaaat-----aaaataaaaACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     132343 328 +    290775 ggccaggcgcggtggctcagccttgtaatctcagcacgttaggaggccaaagcaggcggatcacgaagtcaggaaatcgagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcaggcccctgtagtcccagctactcgggagactgaagcgggagaatggcgtgaacctgggaggcagagcttgcagtgagccaagatcgcgccactgcactcc-agcctaggcaacagagcaaaactcccatctc-aaaaaaaaaTAACAAT--aataaaataaaataaaataaaataaaaC---------------CC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2586855 344 -   3067355 ggccaggcgcagtggctcagccctgtaatcccagtactttgggaggccaaagcaggcagatcatgaggtcaggaaatcgagaccatcctggctaacaaggtgaaaccccatctctactaaaaatacaaaaaattagccgggcgtggtggcgggtgcctgtagtcccagctactcaggagactgaagcaagagaatggcgtgaacccgggaggcagagcttgcagtgagccgagatcacgccactgcactcc-agcctgggcgacagagcaaaactcccatctcaaaaaaaaaaTAATAAT--ACtaaaacaaaataaaataaaataaaataaaataaaataaaaacc
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           177014   0 -    242197 C
e otoGar3.GL873550            17736 6010 +  18854210 T
e aotNan1.NW_018509740v1     246358  86 -    457564 I
e cebCap1.NW_016107755v1     171049   0 -   1771730 C
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=606007.000000
s hg38.chr6_GL000254v2_alt   844881 101 +   4827813 aacatgttttggtgactagaagtgttgaatgttgagaatatagtaggag-aaaatggtcagtttgggggttttctacaAATACACAGAGCCCTTTCGCATTG
s panTro5.chr6             29807592 101 + 175400573 aacatgttttggtgactagaagtgttgaatgttgagaatatagtaggag-aaaatggtcagtttgggggttttctacaAATACACAGAGCCCTTTCGCATTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30042224 101 + 173848474 aacatgttttggtgactagaagtgttgaatgttgagaatatagtaggag-aaaatggtcagtttgggggttttctacaAATACACAGAGCCCTTTCGCATTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5845624 101 +   6154872 aacatgttttggtgactagaagtgttgaatgttgagaatatagtaggag-aaaatggtcagtttgggggttttctacaAATACACAGAGCCCTTTCGCATTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30039065  96 + 172585720 aacatgttttggtgactagaagtgtcgaatgttgaggata---taggag-aaaatggtcagttt-ggggttttctgcaAATACCC-GAGCCCTTTCCCATTG
i rheMac8.chr4             C 0 I 33
s macFas5.chr4             29701508  98 - 170955103 AACATGTTTTGGTGACTAGAAGTGTCAAATGTTGAGGATA---TAGGAG-AAAATGGTCAGTTTGGGGGTTTTCTGCAAATACCCGGAGCCCTTTCCCATTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2747679  98 -   2996164 AACATGTTTTGGTGACTAGAAGTGTCGAATGTTGAGGATA---TAGGAG-AAAATGGTCAGTTTGGGGGTTTTCTGCAAATACCCGGAGCCCTTTCCCATTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     500901  98 +    766320 aacatgttttggtgactagaagtgtcgaatgttgaggata---tgggag-aaaatggtcagtttgGGGGTTTTCTGCAAATACCCGGAGCCCTTTCCCACTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28956384  98 -  71996105 AACATGTTTTGGTGACTAGAAGTGTCGAATGTTGAGGATA---TAGGAG-AAAATTGTCAGTTTGGGGGTTTTCTGCAAATACCCAGAGCCCTTTCCCATTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     132671  98 +    290775 AACATGTTTTGGTGACTAGAAGTGTCGAATGTTGAGGATA---TAGGAG-AAAATGGTCAGTTTGGGGGTTTTCTGCAAATACCCAGAGCCCTTTCCCATTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2587199  98 -   3067355 aacacgttttggtgactagaagtgttgaatgttgaggata---taggag-aaaatggtcagtttgGGGGTTTTCTGCAAATACTCGGAGCCCTTTCCCATTG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           177014 100 -    242197 aacatgttttggtgactagaagtgttgaatgttgagaatacagtaggaaaaaaatggtgagttt-ggggttttctccaaatacacaGATCCTTT-CCCATTG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     171049 101 -   1771730 aacatgttttggagactagaagtgttgaatgttgagaatacagtaggagaaaaatggtcagttt-ggggttttctccaaatacacaGAGCCCTTACCCATTG
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e aotNan1.NW_018509740v1     246358  86 -    457564 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=51733.000000
s hg38.chr6_GL000254v2_alt   844982 9 +   4827813 CGCAGCATC
s panTro5.chr6             29807693 9 + 175400573 CGCAGCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30042325 9 + 173848474 CGCAGCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5845725 9 +   6154872 CGCAGCATC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29701606 9 - 170955103 TGCAGCATC
i macFas5.chr4             C 0 I 25
s macNem1.NW_012011356v1    2747777 9 -   2996164 TGCAGCATC
i macNem1.NW_012011356v1   C 0 I 25
s cerAty1.NW_012002711v1     500999 9 +    766320 TGCAGCATC
i cerAty1.NW_012002711v1   C 0 I 20
s chlSab2.chr17            28956482 9 -  71996105 TGCAGCATC
i chlSab2.chr17            C 0 I 20
s manLeu1.NW_012099233v1     132769 9 +    290775 TGCAGCATC
i manLeu1.NW_012099233v1   C 0 I 20
s colAng1.NW_012115566v1    2587297 9 -   3067355 TGCAGCATC
i colAng1.NW_012115566v1   C 0 I 20
s saiBol1.JH378357           177114 9 -    242197 TGCAGCATC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     171150 9 -   1771730 TACAGCATC
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e aotNan1.NW_018509740v1     246358 86 -    457564 I
e rheMac8.chr4             30039161 33 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=806525.000000
s hg38.chr6_GL000254v2_alt   844991 217 +   4827813 ----------CAATTTGAATCCTGGACCTGCAAACTCATGCCCaggatatagtgccatatcaagggcagcatttgcatgtttctggcaggccggacgttcagtagctgcaggagttagatcagtgttggtgagtgaaagccatgctgttgaacacatacagacctgcatcctgccaccatagttactgccttcataagtccatttttaccagcactagggtggcctg
s panTro5.chr6             29807702 217 + 175400573 ----------CAATTTGAATCCTGGACCTGCAAACTCATGCCCAGAATatagtgccatatcaagggcagcatttgcatgtttctggcaggctggacgttcagtagctgcaggagttagatcagtgttggtgagtgaaagccatgctgttgaacacatacagacctgcatcctgccaccatagttactgccttcataagtccatttttaccagcactagggtggcctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30042334 217 + 173848474 ----------CAATTTGAATCCTGGACCTGCAAACTCATGCCCAGAATatagtgccatatcaagggcagcatttgcatgtttctggcaggctggacgttcagtagctgcaggagttagatcagtgttggtgagtgaaagccatgctgttgaacacatacagacctgcatcctgccaccatagttactgccttcataagtccatttttaccagcactagggtggcctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5845734 217 +   6154872 ----------CAATTTGAATCCTGGACCTGCAAACTCATGCCCAGAATatagtgccatatcaaggtcagcatttgcatgtttctggcaggctggacgttcagtagctgcaggagttagatcagtgctggtgagtgaaagccatgctgttgaacacatacagacctgcatcctgccaccatagttactgccttcataagtccatctttaccagcactagggtggcctg
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     501028 217 +    766320 ----------CATTTTGAATCCTGGACCTGCAAACTCATGCCCAGAATGtggtgccatatcaagggcagcatttgcatgtttctggcaggttggacgttcagcagcagcaggagttagatcagtgctggtgagttgaagccatgctgttgaacacatacagacctgcatcctgccaccatcgctactgccttcataagtccattttcaccagcactagggtggcctg
i cerAty1.NW_012002711v1   I 20 C 0
s chlSab2.chr17            28956511 217 -  71996105 ----------CATTTTGAATCCTGGACCTGCAAACTCATGcccagaatgtggtgccatatcaagggcagtatttgcatgtttctcgcaggttggacgttcagcagaagcaggagttagatcagtgttggtgagttgaagccatgctattgaacacatacagacctgcatcctgccaccatcactactgccttcataagtccatttttaccaggactagggtggcctg
i chlSab2.chr17            I 20 C 0
s manLeu1.NW_012099233v1     132798 217 +    290775 ----------CATTTTGAATCCTGGACCTGCAAACTCATGCCCAGAATGtggtgccatatcaagggcagcatttgcatgtttctggcaggttggacgttcagcagcagcaggagttagatcagtgctggtgagttgaagccatgctgttgaacacatacagacctgcatcctgccaccatcgctactgccttcataagtccattttcaccagcactagggtggcctg
i manLeu1.NW_012099233v1   I 20 C 0
s colAng1.NW_012115566v1    2587326 217 -   3067355 ----------CATTTTGAATCCTGGACCTACAAACTCATGCCCAGGATGtggtgccatatcaagggcagcatttgcatgtttctggcaggttggacgttcagcggcagcaggagttagatcagtgttggtgagttgaagccatgctgttgaacacatacagacctgcatcctaccaccatcgctactgccttcataagtccagttttaccagcactaggacggcctg
i colAng1.NW_012115566v1   I 20 C 0
s saiBol1.JH378357           177123 226 -    242197 AGATGGCCTTGGATTTGAATCCTGGACCTGCAAACTCACGCCCAGAATatgatactatatcaagggcagcatttgcatgtttcttgcaggttggacattcagcagcagcaggaattagatcagtgtcggagagtggaagtcatgctgttgaacacatacagacctgcatccggccaccatcactcctgcctccataagcccattgt-gccagcattagggtggcctg
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     171159 226 -   1771730 AGATGGCCTTGGATTTGAATCCTGGACCTGCAAACTCATGCCCAGAATatgatgccatatcaaaggcagcatttgcatgtttcttgcaggttggacattcagcagcagcaggagttagatcagtgtcggagagtggaagccattctgttgaacccatacagacctgcatcctgcgaccatcactactgcctccataagcccattgt-gccagcattagggtggcctg
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e aotNan1.NW_018509740v1     246358  86 -    457564 I
e macNem1.NW_012011356v1    2747786  25 -   2996164 I
e macFas5.chr4             29701615  25 - 170955103 I
e rheMac8.chr4             30039161  33 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=3289214.000000
s hg38.chr6_GL000254v2_alt   845208 521 +   4827813 tggagaagactgcttagtgtgaactggcctatagtcactgtttacttggtttagaagaggtttagagcctcttctattgtggatgctttctagtgggcattagcatgtaacacaaagatattcacaattttcccaatttcataaat--aaaaagatttcccattttcataaacctatccaagtgcctcttcctcaaatttcattgttcttcatcttctaaacctcctccttccaagcacttgaccaaccaaccaagccatttgccactgcccatgtattcacaaatattcttccattaggccattattctttctacacaaaatagataatcaggtgcactactcaaagctttgcccattgggaagatttacaatttctactgtcttccagaactactcttgagtgtggctataatgcagcagcagtccattttcagctcacaccaatgtgttgagcagatacatccatgaaccaaggtcatcttatttttcctccattagccaatcataaagtacccctcccc
s panTro5.chr6             29807919 521 + 175400573 tggagaaggctgcttagtgtgaactggcctatagtcactgtttacttggtttagaagaggtttagagcctcttctattgtggatgctttctagtgggcattagcatgtaacacaaagatattcacaattttcccaatttcataaat--aaaaagatttcccattttcataaatccatccaagcgcctcttcctcaaatttcattgttcttcatcttctaaacctcctccttccaagcacttgaccaaccaaccaagccatttgccactgtccatgtattcacaaatattcttccattaggccattattctttctacacaaaatagataatcaggtggactactcaaagctttgcccattgggaagatttacaatttctactgtcttccagaactactcttgagtgcggctataatgcagcagcagtccattttcagctcacaccaatgtgttgagcagatacatccatgaaccaaggtcatcttacttttcctccattagccaatcataaagtacccctcCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30042551 521 + 173848474 tggagaaggctgcttagtgtgaactggcctatagtcactgtttacttggtttagaagaggtttagagcctcttctattgtggatgctttctagtgggcattagcatgtaacacaaagatattcacaattttcccaatttcataaat--aaaaagatttcccattttcataaatccatccaagcgcctcttcctcaaatttcattgttcttcatcttctaaacctcctccttccaagcacttgaccaaccaaccaagccatttgccactgtccatgtattcacaaatattcttccattaggccattattctttctacacaaaatagataatcaggtggactactcaaagctttgcccattgggaagatttacaatttctactgtcttccagaactactcttgagtgcggctataatgcagcagcagtccattttcagctcacaccaatgtgttgagcagatacatccatgaaccaaggtcatcttacttttcctccattagccaatcataaagtacccctcCCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5845951 520 +   6154872 tggagaaggctgcttagtgtgaactggcctatagtcactgtttacttggtttagaagaggtttagagcctcttctattgtggatgctttctagtgggcattagcatgtaacacaaagatattcacaattttcccaatttcataaat--aaaaagatttcccattttcataaatccatccaagc-cctcttcctcaaatttcattgttcttcatcttctaaacctcctccttccaagcacttgaccaaccaaccaagccatttgccactgcccatgtattcacaaatattcttccattaggccattattctttctacacaaaatagataatcaggtgcactactcaaagctttgcccattgggaagatttacaatttctactgtcttccagaactactcttgagtgtggctataatgcagcagcagtccattttcagctcacaccaatgtgttgagcagatacatccatgaaccaaggtcatcttatttttcctccattagccaatcataaggtacccctcccc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30039194 512 + 172585720 TGGagaa-gctgcttagtgtgaactggcctgtagtcactgtttacttggtt--------gtttagagccccttctattgtggatgctctctagtgggcattagcatgcaaaacaaagatattcacaattttcccattttcataaat-aaaaaagatttccaattttcataaatccatccaagtgcctcttcctcaaatttcattgttcttcatcttctaaacctcctccttccaagcccttgaccagccaaccaagccatttgccactgcccatgtattcac-aatattcttccattaggccattactctttccacacaaaatagataatcaggtgcactacgcaaagctttgcccattgggaggatttacaatttctactgtcttccagaactactcttgggtgcggctataatgcagcagctgtccattttcagctcacaccaatgtgttgagcagatacatccatgaaccaaggtcatcttatttttcctccattagccaattataaagtacccctcacc
i rheMac8.chr4             I 33 C 0
s macFas5.chr4             29701640 513 - 170955103 TGGagaa-gctgcttagtgtgaactggcctgtagtcactgtttacttggtt--------gtttagagccccttctattgtggatgctctctagtgggcattagcatgcaaaacaaagatattcacaattttcccattttcataaataaaaaaagatttcccattttcataaatccatccaagtgcctcttcctcaaatttcattgttcttcatcttctaaacctcctccttccaagcccttgaccagccaaccaagccatttgccactgcccatgtattcac-aatattcttccattaggccattattctttccacacaaaatagataatcaggtgcactacgcaaagctttgcccattgggaggatttacaatttctattgtcttccagaactactcttgagtgcggctataatgcagcagctgtccattttcagctcacaccaatgtgttgagcagatacatccatgaaccaaggtcatcttatttttcctccattagccaattataaagtacccctcacc
i macFas5.chr4             I 25 C 0
s macNem1.NW_012011356v1    2747811 513 -   2996164 TGGagaa-gctgcttagtgtgaactggcctgtagtcactgtttacttggtt--------gtttagagccccttctattgtggatgctctctagtgggcattagcatgcaaaacaaagatattcacaattttcccattttcataaataaaaaaagatttcccattttcataaatccatccaactgcctcttcctcaaatttcattgttcttcatcttctaaacctcctccttccaagcccttgaccagccaaccaagccatttgccactgcccatgtattcac-aatattcttccattaggccattattctttccacacaaaatagataatcaggtgcactacgcaaagctttgcccattgggaggatttacaatttctattgtcttccagaactactcttgagtgcggctataatgcagcagctgtccattttcagctcacaccaatgtgttgagcagatacatccatgaaccaaggtcatcttatttttcctccattagccaattataaagtacccctcacc
i macNem1.NW_012011356v1   I 25 C 0
s cerAty1.NW_012002711v1     501245 514 +    766320 tggagaaggttgcttactgtgaactggcctgtagtcactgtttacttcgtt--------gtttagagccccttctattgtggatgctctctagtggccattagcatgcaaaacaaagatattcacaattttccccttttcataaataaaaaaagatttcccattttcataaatccatccaagtgcctcttcctcaaatttcattgttcttcatcttctaaacctcctccttccaagcccttgaccagccaaccaagccatttgccactgcccatgtattcac-aatattcttccattaggccattattctttccacacaaaacagataatcaggtgcactacgcaaagctttgcccattgggaggatttacaatttctgttgtctttcagaactgctcttgagtgcggctagaatgcagcagccgtccattttcagctcacaccaatgtgttgaaaagatacatccatgaaccaaggtcatcttatttttcctccattagccaattataaagtactcctcacc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28956728 513 -  71996105 tggagaaagctgcttagtgtgaactggcctgtagtcactgtttacttggtt--------gtttagagccccttttattgtggatgctctctagtgggcattagcatgcaaaacaaagatattcacaattttcccattttcataaataaaaaaagatttcccattttcttaaatccatccaagtgcctcgt-ctcaaatttcattgttcttcatcctctaaacctcctccttccaagcccttgaccagccaacaaagccatttgccactgcccatgtattcac-aatattcttccattaagccattattctttccacacaaaatagataatcaggtgcactactcaaagctttgcccattgggaggatttacaatttctattgtcttccagaactactcttgagtgcggctataatgcagcagccgcccattttcagctcacaccaatgtgttgagcagatacatccatgaaccaaggtcatcctatttttcctccattagccaattataaagcacccctcacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     133015 514 +    290775 tggagaaggttgcttagtgtgaactggcctgtagtcactgtttacttcgtt--------gtttagagccccttctattgtggatgctctctagtggccattagcatgcaaaacaaagatattcacaattttcccattttcataaataaaaaaagatttcccattttcataaatccatccaagtgcctcttcctcaaatttcattgttcttcatcttctaaacctcctccttccaagcccttgaccagccaaccaagccatttgccactgcccatgtattcac-aatattcttccattaggccattattctttccacacaaaacagataatcaggtgcattacgcaaagctttgcccattgggaggatttacaatttctgttgtctttcagaactgctcttgagtgcggctagaatgcagcagccgtccattttcagctcacaccaatgtgttgaaaagatacatccatgaaccaaggtcatcttatttttcctccattagccaattataaagtacccctcacc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2587543 487 -   3067355 tggagaaggctgcttagtgtgaactggcctgtagtcactgtttacttggtt--------gtttagagccccttctatcgtggatgctctctagtgggtattagcatgcaaaacaaagatattcacaattttcccattttcataaat---------------------------ccatccaagtgcctcttcctcaaatttcattgttcttcatcttctaaacctcctccttccaagcccttgaccagccaaccaagtcatttgccactgcccatgtattcac-aatattcttccattaggccattattctttccacacaaaacagataatcgggtgcactactcaaagctttgcccattgggaggatttacaatttctattgtcttccagaactactcttgagtgcggctataatgcagcagccgtccattttcagctcacaccaatgtgttgagcagatacatccatgaaccaaggtcatcttatttttcctccattagccaattataaagtacccctgccc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           177349 492 -    242197 tgaagaaggctgctttgtgtgaactagcctgtagtcactgtttacttggtc--------gtttagagccttttctattgtgaatgctctctaatgggcattagcatgcaacacaaagatattcacaattttcccattctcataaat-aaaaaagatttcccattttcataaatccatctgcatgcctcttcctcaaatttcattgttcttcatcttctaaatctcctccttccaagcccttgagcaaccaaccaagccatttaccactgcccatgtattcacaaatattcttccattaggcccttattcttcccacacaaaagagataattaagtgaactaccc------------------aagatttacagtttctactgtcttccagaattattctcgagtatggctataatgcagcagccgtccattttcagctcacaccaatgtgttgagtagatatatccatgaaccaagctcatcttatttttcctccatcagccaattataaattacccct----
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     171385 503 -   1771730 tgaagaagcctgctttgtgtgaactggcctgtagtcactgtttacttggtt--------gtttagagccttttctattgtgaatgctctctaatgggcattagcatgcaacacaaagatatttgcaattttcccattttcat--------aaagatttcccatttccataaatccatctgcatgcctcttcctcaaatttcattgttcttcatcttctaaatctcctccttccaagcccttgaccaaccaaccaagccatttaccactgcccatgtattcacagatattcttccattaggcccttattctttccacacaaaacagataattaggtgaactacccaaagatttgcccattgggaagatttacagtttctactgtcttccagaattactctcgagtgtggctataatgcagcagccatccattttcagctcacaccaatgtgttgagcagatatatccatgaaccaagctcatcttattttttctccatcagccaattataaagcacccct----
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e aotNan1.NW_018509740v1     246358  86 -    457564 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=6627691.000000
s hg38.chr6_GL000254v2_alt   845729 884 +   4827813 ---cccccatgacagattaaagatggctgcaaactatcggacaatcatcccatcaggagggctatctatttcccctccccttgaatctgtgctagtctatgactgttttgacaaaaacagcgtggcagaagtgacaccatgccagctctggggccagcctgtaagagaactggctgttcctccttgctatcctggagtcctgaatttccaagtaaaaagt----ctatcatgctgggcagaccatgtagaaaggccctg-----------------------agatagcatgaagacagag------------------------------------------------------------------------------------------------aaaatgagcccaaacttacagtgaacccaccaaggtgccaggcatgtgagtgaagctgtctcggaccctctagagcagtccatctgccagctgaatacttccaagggatcccagctgatgcaaca-tggaatataaggaaacccagccaatttcgttccaaattcttggcccacaacatgtgagatacaataaggtttgtgttcatttaag-ccattaaatttggggagactttgttatgcagcaataaataactagaacactcccatgagccactggtatgagcaagttgggaagtaccaaggccacagcgtggaggacatgggaatctgggccccccacttcagcaccttgcatttaccctccagttctgcccatgactgatgcaggatatacgacttctctcttacaactgatgatgttgcaaccactagacctcatcacttgattgatttgacaggacccagctcatgatggacagttgtagcctaatagccatttgatgtctcatgatcaggagctctgtc-tctagtaaggcccaagagcaagctaggacttgtttcctaatggggtttactttcctgcagcagacagcatagatttgatgaagaacccc
s panTro5.chr6             29808440 881 + 175400573 ---CCT---TAACagattaaagatggctgcaaactatcggacaatcatcccatgaggagggctatctatttcccctccccttgaatctgtgctagtctatgactgttttgacaaaaacagcatggcagaagtgacaccatgccagctctggggccagcctgtaagagaactggctgttcctccttgctatcctggagtcctgaatttccaagtaaaaagt----ctatcatgctgggcagaccatgtagaaagaccctg-----------------------agatagcatgaagacagaa------------------------------------------------------------------------------------------------aaaatgagcccaaacttacagtgaacccaccaaggagccaggcatgtgagtgaagctgtctcggaccctctagagcagtccatctgccagctgaatacttccaagggatcccagctgatgcaaca-tggaatacaaggaaacccagccaatttcgttccaaattcttggcccacaacatgtgagatacaataaggtttgtgttcatttaag-ccattaaatttggggagactttgttatgcaacaataaataactagaacaCTcccatgagccactggtatgagcaagttgggaagtaccaaggccacagcgtggaggacatgggaatctgggccccccacttcagcaccttgcatttaccctccagttctgcccacgactgatgcagaatatacgacttctctcttacaactgatgatgttgcaaccaccagacctcatcacttgattgatttgacaggacccagctcatgatggacagttgtagcctaatagccatttgatgtctcatgatcaggagctctgtc-tctagtaaggcccaagagcaggctaggacttgtttcctaatggggtttactttcctgcagcagacagcatagatttcatgaagaacccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30043072 881 + 173848474 ---CCT---TAACagattaaagatggctgcaaactatcggacaatcatcccatgaggagggctatctatttcccctccccttgaatctgtgctagtctatgactgttttgacaaaaacagcatggcagaagtgacaccatgccagctctggggccagcctgtaagagaactggctgttccttcttgctatcctggagtcctgaatttccaagtaaaaagt----ctatcatgctgggcagaccatgtagaaaggccctg-----------------------agatagcatgaagacagaa------------------------------------------------------------------------------------------------aaaatgagcccaaacttacagtgaacccaccaaggagccaggcatgtgagtgaagctgtctcggaccctctagagcagtccatctgccagctgaatacttccaagggatcccagctgatgcaaca-tggaatataaggaaacccagccaatttcgttccaaattcttggcccacaacatgtgagatacaataaggtttgtgttcatttaag-ccattaaatttggggagactttgttatgcagcaataaataactagaacaCTcccatgagccactggtatgagcaagttgggaagtaccaaggccacagcgtggaggacatgggaatctgggccccccacttcagcaccttgcatttaccctccagttctgcccacgactgatgcagaatatacgacttctctcttacaactgatgatgttgcaaccaccagacctcatcacttgattgatttgacaggacccagctcatgatggacagttgtagcctaatagccatttgatgtctcatgatcaggagctctgtc-tctagtaaggcccaagagcaggctaggacttgtttcctaatggggtttactttcctgcagcagacagcatagatttcatgaagaacccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5846471 881 +   6154872 ---cca---tgacagattaaagatggctgcaaactatcggacaatcatcccatcaggagggctatctatttcccctccccttgaatctgtgctagtctatgactgttttgacaaaaacagcgtggcagaagtgacaccatgccagctctggggccagcctgtaagagaactggctgttcctccttgctatcctggagtcctgaatttccaagtaaaaagt----ctatcatgctgggcagaccatgtagaaaggccctg-----------------------agatagcatgaagacagag------------------------------------------------------------------------------------------------aaaatgagcccaaacttacagtgaacccaccaaggtgccaggcatgtgagtgaagctgtctcagaccctctagagcagtccatctgccagctgaatacttccaagggatcccagctgatgcaaca-tggaatataaggaaacccagccaatttcgttccaaattcttggcccacaacatgtgagatacaataaggtttgtgttcatttaag-ccattaaatttggggagactttgttatgcagcaataaataactagaacactcccatgagccactggtatgagcaagttgggaagtaccaaggccacagcgtggaggacatgggaatctgggccccccacttcagcaccttgcatttaccctccagttctgcccacgactgatgcaagatatacgacttctctcttacaactgatgatgttgcaaccaccagacctcatcacttgattgatttgacaggacccagctcatgatggacagttgtagcctaatagccatttgatgtctcatgatcaggagctctgtc-tctagtaaggcccaagagcaggctagggcttgtttcctaatgggatttactttcctgcagcagacagcacagatttcatgaagaacccc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30039706 893 + 172585720 ---cca---tgacagattaaagatggctacaaactatcggacaatcatcccatcaggagggctatctatttcccctccccttgaatctgtgctagtctatgactgttttgacaaaaacagtgtggcagaagtgacaccatgccggctctggggccagcctgtaggagaactggctgttcctcattgctatcttggagtcctgagtttccaagtaaaaagtttgactatcatgctgggcagactatgtagaaaggccctg-----------------------agatagcatgaagacagag-----------------------------------------------------------------------------------------aagagtcaagatgagcccaaacttacagtgaacccaccaaggtgtcaggcatgtgagtgaagctgtctcggaccctctagagcagtccatctgccagctgaatacttccaagggatcccagctcatacaacattggaatataagaaaacccagctaatttcttcccaaattcttggcccacaacatgtgagatacaaagaagtttgtgttcatttaagcccattaaatttggggagattttgttatgcagcaataaataactagaacactcccatgagctactggtatgagcaagttgggaagtaccaaggccacagtgtgcgggacatgggaacct-ggtcccccacttcagcaccttgcatttgccctccagttctgcccacgattgatccaggatatactacttctctcttccaattgatgatgttgtaaccaccagacctcatcatttgattgatttgacaggacccagctcatgatggacagtcctagcctcatggccatttgatgtctcatgatcaggagctctgtc-tctattaaggcccaagagcaggctaggacttgtttcctaatggagttcactttcctgcaacagacagtatagctttgatcaagaacccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29702153 892 - 170955103 ---cca---tgacagattaaagatgactacaaactatcggacaatcatcccatcaggagggctatctatttcccctccccttgaatctgtgctagtctatgactgttttgacaaaaacagtgtggcagaagtgacaccatgccggctctggggccagcctgtaggagaactggctgttcctcattgctatcttggagtcctgagtttccaagtaaaaagtttgactatcatgctgggcagactatgtagaaaggccctg-----------------------agatagcatgaagacagag-----------------------------------------------------------------------------------------aagagtcaagatgagcccaaacttacagcgaacccaccaaggtgtcaggcatgtgagtgaagctgtctcggaccctctagagcagtccatctgccagctgaatacttccaagggatcccagctcatacaaca-tggaatataagaaaacccagccaatttcttcccaaattcttggcccacaacatgtgagatacaaagaagtttgtgttcatttaagcccattaaatttggggagattttgttatgcagcaataaataactagaacactcccatgagctactggtatgagcaagttgggaagtaccaaggccacagtgtgcgggacatgggaacct-ggtcccccacttcagcaccttgcatttgccctccagttctgcccacgattgatccaggatatactacttctctcttccaattgatgatgttgtaaccaccagacctcatcatttgattgatttgacaggacccagctcatgatggacagtcctagcctcatggccatttgatgtctcatgatcaggagctctgtc-tctattaaggcccaagagcaggctaggacttgtttcctaatggagttcactttcctgcaacagacagtatagctttgatcaagaacccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2748324 893 -   2996164 ---cca---tgacagattaaagatggctacaaactatcggacaatcatcccatcagaagggctatctatttcccctccccttgaatctgtgctagtctatgactgttttgacaaaaacagcgtggcagaagtgacaccatgccggctctggggccagcctgtaggagaactggctgttcctcattgctatcttggagtcctgagtttccaagtaaaaagtttaactatcatgctgggcagactatgtagaaaggccctg-----------------------agatagcatgaagacagag-----------------------------------------------------------------------------------------aagagtcaagatgagcccaaacttacagtgaacccaccaaggtgtcaggcatgtgagtgaagctgtctcggaccctctagggcagtccatctgccagctgaatacttccaagggatcccagctcatacaacattggaatataagaaaacccagctaatttcttcccaaattcttggcccacaacatgtgagatacaaagaagtttgtgttcatttaagcccattaaatttggggagattttgttatgcagcaataaataactagaacactcccatgagctactggtatgagcaagttgggaagtaccaaggccacagtgtgcgggacatgggaacct-gatcccccacttcagcaccttgcatttgccctccagttctgcccatgattgatccaggatatactacttctctcttccaattgatgatgttgtaaccaccagacctcatcatttgattgatttgacaggacccagctcatgatggacagtcctagcctcatggccatttgatgtctcatgatcaggagctctgtc-tctattaaggcccaagagcaggctaggacttgtttcctaatggagttcactttcctgcaacagacagtatagctttgatcaagaacccc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     501759 892 +    766320 ---cca---tgacagattaaagatggctacaaactatcggacaatcatcccatcaggagggctatctatttcccctccccttgaatctgtgctagtctatgactgttttgacaaaaacagtgtggcagaagtgacaccatgccggctctggggccagcctgtaagagaactggctgttcctcattgctatcttggagtcctgagtttccaagtaaaaagtttgactatcatgctgggcagactatgtagaaaggccctg-----------------------agatagcatgaagacagag-----------------------------------------------------------------------------------------aagagtcaagatgagcccaaacttacagtgaacccaccaaggtgtcaggcatgtgagtgaagctgtctcggactctctagagcagtccatatgccagctgaatacttccaagggatcccagctgatacaaca-tggaatataagaaaacccagccaatttcttcccaaattcttggcctacaacatgtgagatacaaagaagtttgtgttcatttaagcccattaaatttggggagattttgttatgcagcaataaataactagaacactcccatgagctactggtatgagcaagttgggaagtaccaaggccacagtgtgcgggacatgggaacct-ggtcccccacttcagcaccttgcatttgccctccagttctgcccacgattgatccaggatatactacttctctcttccaattgatgatgttgtaaccaccagacctcatcatttgattgatttgacaggacccagctcatgatggacagtcttagcctcacggccatttgatgtctcatgatcaggagctctgtc-tctattaaggcccaagagcaggctaggacttgtttcctaatggagttcactttcctgcaacagacagtatagctttgatcaagaacccc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28957241 892 -  71996105 ---cca---tgacagattaaagacggctacaaactatcggacaatcatcccatcaggagggctatctatttcccctccccttgaatctgtgctagtctatgtctgttttgacaaaagcagtgtggcagaagtgacaccatgccagctctggggccagcctgtaagagaactggctgttcctcattgctatcttggagtactgagtttccaagtaaaaagtttgactatcatgctgggcagaccatgtagaaaggccctg-----------------------agatagcatgaagacagag-----------------------------------------------------------------------------------------aagagtcaagatgagcccaaacttacagtgaacccaccaaggtgacaggcatgtgagtgaagctgtctcggaccctctagagcagtccatctgccatctgaatacctccaagggatcccagctgatacaaca-tggaatataagaaaacccagccaatttcttcccaaattcttggcccacaacatatgaaatacaaagaagtttgtgttcatttaagcccattaaatttggggagatcttgttatgcagcaataaataactagaacactcccatgagccactggtatgagcaagttgggaagtaccaaggccacagtgtgcaggacatgggaacct-ggtcccccacttcagcaccttgcatttgccctccagttctgcccacgattgatccaggatatactacttctctcttccaattgatgatgttgtaaccaccagacctcaccatttgattgatttgacaggacccagctcatgatggacagtcctagcctcacggccatttgatgtctcatgatcaggagctctgtc-tctattaaggcccaagaacaggctaggacttgtttcctaatggagttcactttcctgcaacagacagtatagctttgatcaagaacccC
i chlSab2.chr17            C 0 I 550
s manLeu1.NW_012099233v1     133529 892 +    290775 ---cca---tgacagattaaagatggctacaaactatcggacaatcatcccatcaggagggctatctatttcccctccccttgaatcggtgctagtctatgactgttttgacaaaaacagtgtggcagaagtgacaccatgccggctctggggccagcctgtaagagaactggctgttcctcattgctatcttggagtcctgagtttccaagtaaaaagtttgactatcatgctgggcagactatgtagaaaggccctg-----------------------agatagcatgaagacagag-----------------------------------------------------------------------------------------aagagtcaagatgagcccaaacttacagtgaacccaccaaggtgtcaggcatgtgagtgaagctgtctcggactctctagagcagtccatatgccagctgaatacttccaagggatcccagctgatacaaca-tggaatataagaaaacccagccaatttcttcccaaattcttggcctacaacatgtgagatacaaagaagtttgtgttcatttaagcccattaaatttggggagattttgttatgcagcaataaataactagaacactcccatgagctactggtatgagcaagctgggaagtaccaaggccacagtgtgcgggacatgggaacct-ggtcccccacttcagcaccttgcatttgccctccagttctgcccacgattgatccaggatatactacttctctcttccaattgatgatgttgtaaccaccagacctcatcatttgattgatttgacaggacccagctcatgatggacagtcttagcctcatggccatttgatgtctcatgatcaggagctctgtc-tctattaaggcccaagagcaggctaggacttgtttcctaatggagttcactttcctgcaacagacagtatagctttgatcaagaacccc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2588030 893 -   3067355 ---cca---tgacagattaaagatggctacaaactatcagacaatcatcccatcaggagggctatctatttcccctccccttgaatctgtgctagtctatgactgttttgacaaaagcagtgtggcagaagtgacaccatgccagctctggggccagcctgtaagagaactggctgttcctcattgctgtcttggagttctgaatttccaagtaaaaagtttgactatcacgctgggcagaccatgtagaaaggccctg-----------------------agatagcatgaagacagag-----------------------------------------------------------------------------------------aagagtcaagatgagcccaaacttacagtgaacccaccaaggtgtcaggcatgtgagtgaagctgtctcggaccctctagagcagtccatctgccagctgaatacttccaagggatcccagctgatacaaca-tggaatataagaaaacccagccaatttcttcccaaattcttggcccacaacatgtgagatacaaagaagtttgtgttcatttaagcccattaaatttggggagattttgttacacagcaataaataactagaacactcccatgagccactgctatgagcaagttgggaagtaccaaggccacagtgtggaggacatgggagcct-ggttccccacttcagcaccttgcatttgccctccagttctgcccacaattgatccaggatatactacttctctcttccaattgatgatgttgtaaccaccagacctcatcatttgattgatttgacaggacccagctcatgatggacagtcctagtctcatggccatttgatgtctcatgatcaggagctctgtcttctaataaggcccaagagtaggctaggacttgtttcctaatggagttcactttcctgcagcagacagcatagctttgatcaagaacccc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           177841 978 -    242197 ccccca---tgacagattaaagattgccacaaactctctgacaatcgacccatcaggtgggctatctatttttcctccccttgaatctgtgctgttctataactgtttggacaaaaatagtgtggcagaagtgacaccatgccagttttggggctagcctataagataattggctgttcctcct-----tcttggagtcctgagtttccaagtaaaaattttgactatcatgctgggcagaccatgtagaaaggtcccg-----------------------aaatagcatgaagacagagaagaatcaagacgagcccaaacttaacccaaaaccaccaaggtgccaggcatgtgagtgaagctgtctcggaccctttagagtagtccaaagagtcaagatgagcccaaacttacagcaaaaccaccaagttgccaggcatgtgagtaaagctgtcttggaccctccaaagtagtccatctgccagctgaatatttccaagggatcccagctgatgcaaca-tggaatgtaagaaaacccagccaatctcttcccaaattcttggcccacaacatgtaagattcaatgagttttgcattcatttaag-cctttaaatttggggagattttgttatgcagcaatagataactagaacactcccacgagccaccggtatgagcaagtgaggaggtaccaagtccacattgtggaagacatggggacctgggtcccccacttcagcaccttgcatttgccctccagttttgcccacgattgatccaggatatactatttctgtcttgcaattgatgatgttacaaccaccagacctcatcatttgattgatttgacaggatacagctcataatggacagttctagtgttgtgaccatttgatatctcaagatcaggagctctatc-tctaataaagcccaagagcaggctaggacttgtttcctagt-gggtttattttcccgcagcagacagcatagctttgatcaagaacccc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     171888 848 -   1771730 ccccca---tgacagattaaagattgccacaaactatctgacaatcaacccatcagaagggctatctatttttcctctccttgaatctgtgctggtcttt---tgtttggacaaaaatagtgtggcggaagtgacaccacaccagctctggggctatcctataagagaattggctgttcctcct-----tcttggagtcctgagttcccaagtaaaaagtttgactatcatgctgggcagaccatgtagaaaggtcctgagat-------------------agatagcatgaagacagag-----------------------------------------------------------------------------------------aagagtcaagatgagcccaaacttacagcaaaaccaccaaggtgccaggcatgcgagtaaagctgtcttggaccctccagagtaatccatctgccagctgaatatttccaagggatcccagcagatgcaaca-tggaatataagcaaacccagccaatctcttcccaaattcttg------------------------------------------g-cctttaaatttggggagattttgttatgcagcaatatataactagaacactcccatgagccaccggtatgagcaagtgaggaggtaccaaggccacattgtggaggacatggggacctgggtcccccacttcagcaccttgcatttgccctccagttttgcccacgattgatctgggatatactatttctgtcttacaattgatgatgttacaaccaccagacctcatcatttgattgatttgacaggacccagctcataatggacagttctagtgtcatggccatttgatgtctcatgatcaggagctctatc-tctaataaagcccaagagcaggctaggacttgtttcctagt-gggtttattttcctgcagcagacagaatagctttgatcaagaacccc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     246444 913 -    457564 CCCCCA---tgacagattaaagattgacacaaactatctgacaatcatcccatcaagagggctatctatttgtcctccccttcaatctgtgctggtctataattgtttggacaaaaatagtgtggcagaagtgataccacgccagctctgaggctagcctataagagaattggctgttcctcct-----tcttggagtcctgagtttccaagtaaaaagtttgactatcatgctgggcagatcatgtagaaaggccctgagatagcatgtagaaaggccctgagatagcatgaagacagaa-----------------------------------------------------------------------------------------aagagtcaaaatgagcccaaacttacagcgaacccaccaaggtgccaggcatgtgagtgaagctgtctcggaccctctagagtagtccatctgccagctgaatacttccaagggatcccagctgatgcaaca-ttgaatataagaaaacccagccaatctcttcccaaattcttggcccacaacatgtgagatgcaatgaagtttgctttcatttaag-ccgttaaatttggggagattttgttatgcagcaatagataactagaacaCTCCCATGAgccaccagtgtgagcaaatggggaggtaccaaagccacattgtggaggacatggggacctgggtcctccacttcagcaccttgcatttgccctccagttttgcccacaattgatccaggatatactatttctatcttacaattgacgatgttacaaccaccagaccacatcacttgattgacttgacaggacccagctcataatggacagttctaacctcatggccatttgatgtctcatgatcaggagctctatc-tctaataaagcccaagagcaggctaggacttgtttcctagtggggtttactttcctgcagcagacagcatagctttgatcaagaacccc
i aotNan1.NW_018509740v1   I 86 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=32115.000000
s hg38.chr6_GL000254v2_alt   846613 6 +   4827813 agggat
s panTro5.chr6             29809321 6 + 175400573 agggat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30043953 6 + 173848474 agggat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5847352 6 +   6154872 agggat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30040599 6 + 172585720 ggggat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29703045 6 - 170955103 ggggat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2749217 6 -   2996164 ggggat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     502651 6 +    766320 ggggat
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099233v1     134421 6 +    290775 ggggat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2588923 6 -   3067355 ggggat
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           178819 6 -    242197 agaggt
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     172736 6 -   1771730 agaggt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     247357 6 -    457564 agaggt
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e chlSab2.chr17            28958133 550 -  71996105 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=12494590.000000
s hg38.chr6_GL000254v2_alt   846619 1724 +   4827813 ctatgttgtgattttcctttcaaggcttgcccaaaatgccacactgtatcttttcccaccactgatacctttagtgccc-cagagtctattgagtcacatgaccaaagcactaccacacggctgatatgacagcttagaacagctgcggaccccaggtctgctctgggcttcagtcagtcgctagtaaactgttccatgtggtattcccatgagtgtggaatatgtttcctctagatcctaaataggacaaccaagcattatCTACCCTGGAGAAGAGGA-AGGAGAAGACCAAGATTC-----------------ACTGCTGGAAGAAGAAAACAGCCTATGAGGCTACAGAAACAGGCAGAAAAGAACGTGGAGAAGAAAACTGACAAATACACACAGTTCTCCTCAAGACCTATGGACTCCTGGTCTGAGCCTAATAAAGACTGTTTATTCCA---------------AAAAACACCTCTGTATTATAAATTCTTctgtgtaatagtgtgttactgtgcatctctttccaattctgcattACTGGTGTTAAGTGTGAAATGCAATAATGTGTTCTTACTTTAGAGGGATGTCCTGGCACAAAGTctaaaaacttcaaagatgtggaggatgctgaatcttcacagggtgtatttcccactctctggagtgcatttgtcttaccagtgccgccaatatgcttgccctcatggctcattctgtttggttaataagatattgttgatacagtggaacgatgtcatgttttgtggaatgtccagaaggtccaCGTCcagtggtgtgctgcatgcagctagctcatactgcctcatggagccaactgttaaattttcagaaattgtgcaaaccagttgttaaacatgactattattttaaaataagttattttaaggcataggtaacaaatccctaagctcttcattttctaggtatttaactatcttatcatattttccatactcttctggttatttatatctgttatgtctatataataaagatactaaataatgttgtCTG---TATAATAAAAATATTCTGGATTGGTGATGAGCAACAATCACCATCTTTCGTTTGAGTCTCATGGCCATGAGACCAACCCCATGCA---CTGCTCTGAGACCTGCCAGCCACTCCCATTCCTGGGGTGCGGTCCTCCTGGTTCAGAAGTGATTTTCCATTAGGCTATCTTTTAATTTAAACATGAACTCTGCTGTGCCCATCACTGTCTGTGTGCAGTCACAGGTAGAGGGAGAGCCTTCAGATGGCACCCTCAGCACTTCCCAACCCTTTCCTTCCCTCTAGGCCAGAAGGTGGTGGTCGTACAATGCGAGAGCATCAACATTTCTGGCAAGTTCTACAGAAACAAGTTGAAGTACCT------------GGGCTTTCTCCGCAAGCGGATGAACA-----CCTTCTGGAGGCCCTGCCATTTCTCAGCCCTAGCCGCATCTTCTGGTGGATGGTGCAAGGCCCACTGCCCCACAAGACTCACCAAGGCCAGGCCGCCCTCAACCACCTCAAGGTGTCTGACGGCATTCCACCGCCCCATGACAAGAAAAAGCTTTGGTGGTTCCTGCTGCCCTCAAGCTTGTGTGTCTGAAGCCTACAAGAAAATTTGTCCGCCT-GGACACCGAGCTCATGAAGTTAGCTGGAAGTACCAGGCAG---TGACAGCCACCCTGAAGAAGAGGAAGGAGAAGGCCAAGATCCACTACCAGAAGAAGAAACAGCTTATGAGGCTACAGAAA
s panTro5.chr6             29809327 1723 + 175400573 ctatgttgtgattttcctttcaagacttgcccaaaatgccacactgtatcttttcccaccactgatacctttagtgccc-cagagtctattgagtcacatgaccaaagcactaccacacggctgatatgacagcttagaacagctgcggaccccaggtctgctctgggcttcagtcagtcgctagtaaactgttccatgtggtattcccatgagtgtggaatatgtttcctctagatcctaaataggacaaccaagcattCTCTACCCTGGagaagagga-agaagaagaccaagaTTC-----------------ACTGCTGGAAGAAG-AAACAGCCTATGAGGCTACAGAAACAGGCAGAAAAGAACGTGGAGAAGAAAACTGACAAATACACACAGTTCTCCTCAAGACCTATGGACTCCTGGTCTGAGCCTAATAAAGACTGTTTATTCCA---------------AAAAACACCTCTGTATTATAAATTCTTCTGTGTAATAGTGTGTTACTGTGCATCTCTTTCCAATTCTGCATTACTGGTGTTAAGTGTGAAATGCAATAATGTGTTCTTACTTTAGAGGGATGTCCTGGCACAAAGTctaaaaacttcaaagatgtggaggatgctgaatcttcacagggtgtatttcccactctctggagtgcatttgtcttaccagtgctgccaatatgcttgccctcatggctcattctgtttggttaataagatattgttgatacagtggaacgatgtcatgttttgtggaatgtccagaaggtccaCGTCcagtggtgtgctgcatgcagctagctcatactgcctcatggagccaactgttaaattttcagaaattgtgcaaaccagttgttaaacatgactattattttaaaataagttatTTTAAGGCATAGGTAACAAATCCCTAAGCTCTTCATTTTCTAGGTATTTAACTATCTTACCATATTTTCTATACTCTTCTGGTTATTTATATCTGTTGTGTCTATATAATAAAGATACTAAATAATGTTGTCTG---TATAATAAAAATATTCTGGATTGGTGATGAGCAACAATGACCATCTTTCGTTTGAGTCTCATGGCCATGAGACCAACCCCATGCA---CTGCTCTGAGACCTGCCAGCCACTCCCGTTCCTGGGGTGCGGTCCTCCTGGTTCGGAAGTGATTTTCCATTAGGCTATCTTTTAATTTAAACATGAACTCTGCTGTGCCCATCACTGTCTGTGTGCAGTCACAGGTAGAGGGAGAGCCTTCAGATGGCACCCTCAGCACTTCCCAACCCTTTCCCTCCCTCTAGGCCAGAAGCTGGTGGTCGTACAATGCGAGAGCATCAACATTTCTGGCAAGTTCTACAGAAACAAGTTGAAGTACCT------------GGGCTTTCTCCGCAAGCGGATGAACA-----CCTTCTCGAGGCCCTGCCATTTCTCGGCCCTAGCCGCATCTTCTGGTGGATGGTGCAAGGCCCACTGCCCCACAAGACTCACCAAGGCGAGGCCGCCCTCAACCACCTCAAGGTGTCTGACGGCATTCCACCGCCCCATGACAAGAAAAAGCTTTGGTGGTTCCTGCTGCCCTCAAGCTTGTGTGTCTGAAGCCTACAAGAAAATTTGTCCGCCT-GGACACCGAGCTCATGAAGTTAGCTGGAAGTACCAGGCAG---TGACAGCCACCCTGAAGAAGAGGAAGGAGAAGGCCAAGATCCACTACCAGAAGAAGAAACAGCTTATGAGGCTACAGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30043959 1723 + 173848474 ctatgttgtgattttcctttcaagacttgcccaaaatgccacactgtatcttttcccaccactgatacctttagtgccc-cagagtctattgagtcacatgaccaaagcactaccacacggctgatatgacagcttagaacagctgcggaccccaggtctgctctgggcttcagtcagtcgctagtaaactgttccatgtggtattcccatgagtgtggaatatgtttcctctagatcctaaataggacaaccaagcattCTCTACCCTGGagaagagga-agaagaagaccaagaTTC-----------------ACTGCTGGAAGAAG-AAACAGCCTATGAGGCTACAGAAACAGGCAGAAAAGAACGTGGAGAAGAAAACTGACAAATACACACAGTTCTCCTCAAGACCTATGGACTCCTGGTCTGAGCCTAATAAAGACTGTTTATTCCA---------------AAAAACACCTCTGTATTATAAATTCTTCTGTGTAATAGTGTGTTACTGTGCATCTCTTTCCAATTCTGCATTACTGGTGTTAAGTGTGAAATGCAATAATGTGTTCTTACTTTAGAGGGATGTCCTGGCACAAAGTctaaaaacttcaaagatgtggaggatgctgaatcttcacagggtgtatttcccactctctggagtgcatttgtcttaccagtgctgccaatatgcttgccctcatggctcattctgtttggttaataagatattgttgatacagtggaacgatgtcatgttttgtggaatgtccagaaggtccaCGTCcagtggtgtgctgcatgcagctagctcatactgcctcatggagccaactgttaaattttcagaaattgtgcaaaccagttgttaaacatgactattattttaaaataagttatTTTAAGGCATAGGTAACAAATCCCTAAGCTCTTCATTTTCTAGGTATTTAACTATCTTACCATATTTTCTATACTCTTCTGGTTATTTATATTTGTTATGTCTATATAATAAAGATACTAAATAATGTTGTCTG---TATAATAAAAATATTCTGGATTGGTGATGAGCAACAATGACCATCCTTCGTTTGAGTCTCATGGCCATGAGACCAACCCCATGCA---CTGCTCTGAGACCTGCCAGCCACTCCCGTTCCTGGGGTGCGGTCCTCCTGGTTCGGAAGTGATTTTCCATTAGGCTATCTTTTAATTTAAACATGAACTCTGCTGTGCCCATCACTGTCTGTGTGCAGTCACAGGTAGAGGGAGAGCCTTCAGATGGCACCCTCAGCACTTCCCAACCCTTTCCCTCCCTCTAGGCCAGAAGCTGGTGGTCGTACAATGCGAGAGCATCAACATTTCTGGCAAGTTCTACAGAAACAAGTTGAAGTACCT------------GGGCTTTCTCCGCAAGCGGATGAACA-----CCTTCTCGAGGCCCTGCCATTTCTCGGCCCTAGCCGCATCTTCTGGTGGATGGTGCAAGGCCCACTGCCCCACAAGACTCACCAAGGCCAGGCCGCCCTCAACCACCTCAAGGTGTCTGACGGCATTCCACAGCCCCATGACAAGAAAAAGCTTTGGTGGTTCCTGCTGCCCTCAAGCTTGTGTGTCTGAAGCCTACAAGAAAATTTGTCCGCCT-GGACACCGAGCTCATGAAGTTAGCTGGAAGTACCAGGCAG---TGACAGCCACCCTGAAGAAGAGGAAGGAGAAGGCCAAGATCCACTACCAGAAGAAGAAACAGCTTATGAGGCTACAGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5847358 1721 +   6154872 ctatgttgtgattttcctttcaaggctt-cccaaaatgccacactgtatcttttcccaccactgatacctttagtgccc-cagagtctattgagtcacatgaccaaagcactaccacacggctgatatgacagcttagaacagctgcggaccccaggtctgctctgggcttcagtcagtcactagtaaactgttccatgtggtattcccatgagtgtggaatatgtttcctctagatcctaaataggacaaccaagcattCTCTGCCCTGGAGAAGAGGA-AGGAGAAGACCAAGATTC-----------------ACTGCTGGAAGAAG-AAACAGCCTATGAGGCTACAGAAACAGGCAGAAAAGAACGTGGAGAAGAAAACTGACAAATACACACAGTTCTCCTCAAGACCTATGGACTCCTGGTCTGAGCCTAATAAAGACTGTTTATTCC----------------AAAAACACCTCTGTATTATAAATTCTTctgtgtaatagtgtgttactgtgcatctctttccaattctgcattACTGGTGTTAAGTGTGAAATGCAATAATGTGTTCTTACTTTAGAGGGATGTCCTGGCACAAAGTctaaaaacttcaaagatgtggaggatgctgaatcttcacagggtgtatttcccactctctggagtgcatttgtcttaccagtgccgccaatgtgcttgccctcatggctcattctgtttggttaataagatattgttgatacagtggaacgatgccatgttttgtggaatgtccagaaggtccaCGTCcagtggtgtgctgcatgcagctagctcatactgcctcatggagccaactgttaaattttcagaaattgtgcaaaccagttgttaaacatgactattattttaaaataagatattttaaggcataggtaacaaatccctaagctcttcattttctaggtatttaactatcttaccatattttctatactgttctggttatttatatctgttatgtctatataataaagatactaaataatgttgtCTG---TACAATAAAAATATTCTGGATTGGTGATGAGCAACAATCACCATCTTTCGTTTGAATCTCATGGCCATGAGACCAACCCCATGCA---CTGCTCTGAGACCTGCCAGCCACTCCCGTTCCTGGGGTGTGGTCCTCCTGGTTCAGAAGTGATTTTCCATTAGGCTATCTTTTAATTTAAACATGAACTCTGCTGTGCCCATCACTGTCTGTGTGCGGTCACAGGTAGAGAGAGAGCCTTCAGATGGCACCCTCAGCACTTCCCAACCCTTTCCCTCCCTCTAGGCCAGAAGGTGGTGGTCGTACAATGCGAGAGCATCAACATTTCTGGCAAGTTCTACAGAAACAAGTTGAAGTACCT------------GGGCTTTCTCCGCAAGCGGATGAACA-----CCTTCTCGAGGCCCTGCCATTTCTCGGCCCTAGCCTCATCTTCTGGTGGATGGTGCAAGGCCCACTGCCCCACAAGACTCACCAAGGCCAGGCCGCCCTCAACCACCTCAAGGTGTCTGACGGCATTCCACCGCCCCATGACAAGAAAAAGCTTTGGTGGTTCCTGCTGCCCTCAAGCTTGTGTGTCTGAAGCCTACAAGAAAATTTGTCCGCCT-GGACACCGAGCTCATGAAGTTAGCTGGAAGTACCAGGCAG---TGACAGCCACCCTGAAGAAGAGGAAGGAGAAGGCCAAGATCCACTACCAGAAGAAGAAACAGCTTATGAGGCTACAGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30040605 1749 + 172585720 ctatgttgtgattttccttttgaggcttgcccaaaatgccacactgtatcttttcccaccactgatacctttagtgcttattaggtctattaagtcacatggccaaagcagtaccacatggctgatatgacagcctagaacaactgcagaccccatgtctgctctgggcttcagtcagtcgctagtaaactgttccatgtggtattcccatgagcgtggaatatgcttcctctagaaactaaataggacagccaagcattCTCTACCCTGGAGAAGAGGA-GGGAGAAGACCAAGATTC-----------------ACTAGTGGAAGAAG-AAACAGCTCATGAGGCTACAGAAGCAGGCGGAAAAGAACGTGGAGAAGAAAATTGACAAATACACACAGGTCTCCCCGAGACCTATGGATTTCTGGTCTGAGCCTAATAAAGACTGTTTATTCCAAAACACACACAAACAAAAAACACTCCTGTATTATAAATTattctgtgtaatggtgtgttactgtgtatctctttccagttctgcattagtagtgttacatGTGaaatgcaataatgtgttcttactttagagggatatcctggcacgaagtttaaaaacttcgaagatgtggaggatgctgaatcttcacagggtatatctcccactctctggagtgcatttgtcttaccagtgtcaccaatatgcttgccctcatggctcattctgttcgattaataagatattgttgatacagtggaacaatgtgatgttttgctgaatgtccagaaggtccaAGTTcagtggtgtgt----tgcagctagttcatactgcctcatagagccaacagttaaattttcagaaattgtgtaaatcagttgttaaacatgactattatttt--aagaagttattttaagacataggtaacaaatccctaagctcttcattttctaggtatt----tatcttaccatattttctatactattctggttatttatatctgttatgtctgtataataaaaatactaaataatgttgtCTG---TATAATAAAAATATTCTGGATCGGTGATGAGCAACAATCACCATCTTTCGTTTGAGTTTCATGGCCATGAGACCAACCCCATGCACTGCTGCTCTGAGACCCGCCAGCCACTCCCATTCCTTGAGTGCGGTCCTCCTGGCTCAGAAGTGATTTTCCATTAGCCTGTCTTTTCATTTAAACATGAACTCCGCTCTGCCCATCACTGTCTGGGTGCAGTCACAGGTAGAGGGAGAGCCTTCAGGTGGCACCCTCAGCACTTCCCAACCCTTTCCCTCCTTCTAGGCCAGAAGGTGGTGGTCGTGCGCTGCGAGAGCATCAACATTTCTGGCAATTTCTACAGAAACAAGTTGAAGTACCTGGCCTTTCCGCAGGCCTTTCTCCGCAAGCAGATGAACATCAACCCTTCTCGAGGCCCTGCTATTTCTCGGCCCCAGAGGCATCTTCTGGTGGATGGTGCAAGGCCGGCTGCCCCAAAAGACCCAGCGAGGCCAGGCCACCCTGAACCACCTCAAGGTGTCTGATGGCATTCCGCCGCCCTATGACAAGAAAAAGCGATAGTGGTTCCTGCTGCCCTCAGGGCTGTGTGTCTGAAGCCTACGAGAAAGTTTGTCTGCCT-AGACACCCGGCTCATGAAGTTAGCTGGAAGTACCAGGCAG---TGACAGCCGCCCTGGAGAAGAGGAAGGAGAAGGCCAAGATCCGCTACCAGAAGAAGACACAGCTTATGAGGCTGCAGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29703051 1749 - 170955103 ctatgttgtgattttccttttgaggcttgcccaaaatgccacactgtatcttttcccaccactgatacctttagtgcttattaggtctattaagtcacatggccaaagcagtaccacatggctgatatgacagcctagaacaactgcagaccccatgtctgctctgggcttcagtcagtcgctagtaaactgttccatgtggtattcccatgagcgtggaatatgcttcctctagaaactaaataggacagccaagcattCTCTACCCTGGAGAAGAGGA-GGGAGAAGACCAAGATTC-----------------ACTAGTGGAAGAAG-AAACAGCTCATGAGGCTACAGAAGCAGGCGGAAAAGAACGTGGAGAAGAAAATTGACAAATACACACAGGTCTCCCCGAGACCTATGGATTCCTGGTCTGAGCCTAATAAAGACTGTTTATTCCAAAACACACACAAACAAAAAACACTCCTGTATTATAAATTattctgtgtaatggtgtgttactgtgtatctctttccagttctgcattagtagtgttacgtGTGaaatgcaataatgtgttcttactttagagggatatcctggcacgaagtttaaaaacttcgaagatgtggaggatgctggatcttcacagggtatatctcccactctctggagtgcatttgtcttaccagtgtcgccaatatgcttgccctcatggctcattctgttcgattaataagatattgttgatacagtggaacaatgtgatgttttgctgaatgtccagaaggtccaAGTTcagtggtgtgt----tgcagctagttcatactgcctcatagagccaacagttaaattttcagaaattgtgtaaatcagttgttaaacatgactattatttt--aagaagttattttaagacataggtaacaaatccctaagctcttcattttctaggtatt----tatcttaccatattttctatactattctggttatttatatctgttatgtctgtataataaaaatactaaataatgttgtCTG---TATAATAAAAATATTCTGGATCGGTGATGAGCAACAATCACCATCTTTCGTTTGAGTTTCATGGCCATGAGACCAACCCCATGCACTGCTGCTCTGAGACCCACCAGCCACTCCCATTCCTTGAGTGCGGTCCTCCTGGCTCAGAAGTGATTTTCCATTAGGCTGTCTTTTCATTTAAACATGAACTCCGCTCTGCCCATCACTGTCTGGGTGCAGTCACAGGTAGAGGGAGAGCCTTCAGGTGGCACCCTCAGCACTTCTCAACCCTTTCTCTCCTTCTAGGCCAGAAGGTGGTGGTCGTGCGCTGCGAGAGCATCAACATTTCTGGCAATTTCTACAGAAACAAGTTGAAGTACCTGGCCTTTCCGCAGGCCTTTCTCCGCAAGCAGATGAACACCAACCCTTCTCGAGGCCCTGCTATTTCTCGGCCCCAGAGGCATCTTCTGGTGGATGGTGCAAGGCCGGCTGCCCCAAAAGACCCAGCGAGGCCAGGCCACCCTGAACCACCTCAAGGTGTCTGATGGCATTCCGCCGCCCTATGACAAGAAAAAGCGATAGTGGTTCCTGCTGCCCTCAGGGCTGTGTGTCTGAAGCCTACGAGAAAGTTTGTCTGCCT-AGACACCCGGCTCATGAAGTTAGCTGGAAGTACCAGGCAG---TGACAGCCGCCCTGGAGAAGAGGAAGGAGAAGGCCAAGATCCACTACCAGAAGAAGACACAGCTTATGAGGCCGCAGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2749223 1746 -   2996164 ctatgttgtgattttccttttgaggcttgcccaaaatgccacactgtatcttttcccaccactgatacctttagtgcttattaggtctattaagtcacatggccaaagcagtaccacatggctgatatgacagcctagaacaactgcagaccccatgtctgctctgggcttcagtcagtcgctagtaaactgttccatgtggtattcccatgagtgtggaatatgctccctctagaaactaaataggacaaccaagcattCTCTACCCTGGAGAAGAGGA----AGAAGACCAAGATTC-----------------ACTAGTGGAAGAAG-AAACGGCTCATGAGGCTACAGAAGCAGGTGGAAAAGAACGTGGAGAAGAAAATTGACAAATACATACAGGTCTCCCCAAGACCTATGGATTCCTGGTCTGAGCCTAATAAAGACTGTTTATTCCAAAACACACACAAACAAAAAACACTCCTGTATTATAAATTattctgtgtaatggtgtgttactgtgtatctctttccagttctgcattagtggtgttacgtGTGaaatgcaataatgtgttcttactttagagggatatcctggcacgaagtttaaaaacttcgaagatgtggaggatgctggatcttcacagggtatatctcccactctctggagtgcatttgtcttaccagtgtcgccaatatgcttgccctcatggctcattctgttcgattaataagatattgttgatacagtggaacaatgtgatgttttgctgaatgtccagaaggtccaAGTTcagtggtgtgt----tgcagctagttcatactgcctcatagagccaacagttaaattttcagaaattgtgtaaatcagttgttaaacatgactattatttt--aagaagttattttaagacataggtaacaaatccctaagctcttcattttctaggtatt----tatcttaccatattttctatactattctggttatttatatctgttatgtctgtataataaaaatactaaataatgttgtCTG---TATAATAAAAATATTCTGTATCGGTGATGAGCAACAATCACCATCTTTCGTTTGAGTTTCATGGCCATGAGACCAACCCCATGCACTGCTGCTCTGAGACCCGCCAGCCACTCCCATTCCTTGAGTGCGGTCCTCCTGGCTCAGAAGTGATTTTCCATTAGGCTGTCTTTTCATTTAAACATGAACTCCGCTCTGCCCATCACTGTCTGGGTGCAGTCACAGGTAGAGGGAGAGCCTTCAGGTGGCACCCTCAGCACTTCCCAACCCTTTCCCTCCTTCTAGGCCAGAAGGTGGTGGTCGTGCGCTGCGAGAGCATCAACATTTCTGGCAATTTCTACAGAAACAAGTTGAAGTACCTGGCCTTTCCGCAGGCCTTTCTCCGCAAGCAGATGAACATCAACCCTTCTCGAGGCCCTGCTATTTCTCGGCCCCAGAGGCATCTTCTGGTGGATGGTGCAAGGCCGGCTGCCCCAAAAGACCCAGCGAGGCCAGGCCACCCTGAACCACCTCAAGGTGTCTGATGGCATTCCGCCGCCCTATGACAAGAAAAAGCGATAGTGGTTCCTGCTGCCCTCAGGGCTGTGTGTCTGAAGCCTACGAGAAAGTTTGTCTGCCT-AGACACCCGGCTCATGAAGTTAGCTGGAAGTACCAGGCAG---TGACAGCCGCCCTGGAGAAGAGGAAGGAGAAGGCCAAGATCCACTACCAGAAGAAGACACAGCTTATGAGGCTGCAGAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     502657 1749 +    766320 ctatgttgtgattttccttttgaggcttgcccaaaatgccacactgtatcttttcccaccactgatacctttagtgcttattaggtctattaagtcacatggccaaagcagtaccacatggctgatatgacagcctagaacaactgcagagcccatgtctgctctgggcttcagtcagtcgctagtaaactgttccatgtggtattcccatgagcatggaatatgcttcctctagaaactaaataggacaaccaaacattCTCTACCCTGGAGAAGGGGA-GGGAGAACACCAAGATTC-----------------ACTAGTGGAAGAAG-AAACAGCTCATGAGGCTACAGAAGCAGGTGGAAAAGAACGTGGAGAAGAAAATTGACAAATATACACAGGTCTCCCCAAGACCTATGGATTCCTGGTCTGAGTCTAATAAAGACTGTTTATTCCAAAACACACACAAACAAAAAACACTCCTGTATTATAAATTattctgtgtaatggtgtgttactgtgcatctctttccagttctgcattagtggtgttaagtGTGaaatgcaataatgtgttcttactttagagggatatcctggcacgaagtttaaaaacttcgaagatgtggaggatgctggatcttcacagggtatatctcccactctctggagtgcatttgtcttaccagtgtcgccaatatgcttgtcctcatggctcgttctgtttgattaataagatattgttgatacagtggaacaatgtgatgttttgtagaatgtccagagggtccaCGTTcagtggtgtgt----tgcagctagttcatactgcctcatagagtcaacagttaaattttcagaaattgtgcaaaccagttgttaaacatgactattatttt--aataagttattttaagacataggtaacaaatccctaagctcttcattttctaggtatt----tatcttaccatattttctatactattctggttatttatatctattatgtctgtataataaaaatactaaataatgttgtCTG---TATAATAAAAATATTCTGGATCGGTGATGAGCAACAATCACCATCTTTCGTTTGAGTTTCATGGCCATGAGACCAACCCCATGCACTGCTGCTCTGAGACCTGCCAGCCACTCCCATTCCTTGAGTGTGGTCCTCCTGGCTCAGAAGTGATTTTCCATTAGCCTGTCTTTTCATTTAAACATGAACTCCGCTCTGCCCATCACTGTCTGTGTGCAGTCACAGGTAGAGGGAGAGCCTTCAGGTGGCACCCTCAGCACTTCCCAACCCTTTCCCTCCTTCTAGGCCAGAAGGTGGTGGTCCTGCGCTGCGAGAGCATCAACATTTCTGGCAATTTCTACAGAAACAAGTTGAAGTACCTGGCCTTTCCCCAGGCCTTTCTCCGCAAGCAGATGAACATCAACCCTTCTCGAGGCCCTGCTATTTCTCGGCCCCAGAGGCATCTTCTGGTGGATGGTGCAAGGCCGGCTGCCCCAAAAGACCCAGCGAGGCCAGGCCACCCTGAACCACCTCAAAGTGTCTGATGACATTCCGCCGCCCTATGACAAGAAAAAGCGATAGTGGTTCCTGCTGCCCTCAAGGCTGTGTGTCTGAAGCCTACAAGAAAGTTTGTCTGCCT-AGACACCCGGCTCATGAAGTTAGCTGGAAGTACCAGGCAG---TGACAGCCACCCTGGAGAAGAGGAAGGAGAAGGCCAAGATCCACTACCAGAAGAAGAAACAGCTTATGAGGCTGCAGAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28958683 1752 -  71996105 ctatgttgtgattttccttttgaggcttgcccaaaatgccacagtgtatcttttcccaccactgatacctttagtgcctattaggtctgttaagtcacacggccaaagcagtaccacatggctgatatgacagcgtagaacaactgcagaccccatgtctgctctgggcttcagtcagtcgctagtaaactgttccatgtggtactcccatgagcgtggaatatgcttcctctagaaactaaataggacaaccaagcattCTCTACCCTGGAGAAGAGGA-AGGAGAAGACCAAGATTC-----------------ACTAGTGGAAGAAG-AAACAGCTCATGAGGCTACAGAAGCAGGTGGAAAAGAACGTGGAGAAGAAAATTGACAAATACACACAGGTCTCCCCAAGACCTATGGATTCCTGGTCTGAGCCTAATAAAGACTGTTTATTCCAAAACACACACAAACAAAAAACACTCCTGTATTATAAATTattctgtgtaatggtgtgttactgtgtatctctttccagttctgcattagtggtgttaagtGTGaaatgcaataatgtgttcttactttagagggatatcctggcacgaagtttaaaaactctgaagatgtggaggatgctgaatcttcacagggtatatctcccactctctggagtgcatttgtcttaccagtgtcgccaatatgcttgtcctcatggctcgttctgtttgattaataagatattgctgatacagtggaacaatgtgatgttttgcagaatgtccagaaggtccaCGTTcagtggtgtgt----tgcagctagttcatactgcctcatagagccaacagttaaatttccagaaattgtgtaaatcacttgttaaacatgactattatttt--aagaagttattttaagacataggtaacaaatccctaagctcttcattttctaggtatt----tatcttaccatattttctatactattctggttatttatatctgttatgtctgtataataaaaatactaaataatgttgtCTGGGCTATAATAAAAATATTCTGGATCGGTGATGAGCAACAATCACCATCTCTCGTTTGAGTTTCATGGCCATGAGACCAACCCCATGCACTGCTGCTCCGAGACCTGCCAGCCACTCCCATTCCTTGAGTGCGGTCCTCCTAGCTCAGAGGTGATTTTCCATTAGGCTGTCTTTTAATTTAAACATGAACTCCGCTCTGCCCATCACTGTCTGTGTGCAGTCACAGGTAGAAGGAGAGCCTTCAGGTGGCACCCTCAGCACTTCCCAACCCTTTCCCTCCTTCCAGGCCAGAAGGTGGTGGTCGTGCGCTGCAAGAGCATCAACATTTCTGGCAATTTCTACAGAAACAAGTTGAAGTACCTGGCCTTTCCGCAGGCCTTTCTCCGCAAGCAGATGAACACCAACCCTTCTCGAGGCCCTGCTATTTATCGGCCCCAGAGGCATCTTCTGGTGGATGGTGCAAGGCCGGCTGCCTCAAAAGACCCAGCGAGGCCAGGCCACCCTGAACCACCTCAAGGTGTCTGATGGCATTCGGCCGCCCTATGACAAGAAAAAGCGACAGTGGTTCCTGCTGCCCTCAGGGCTGTGTGTCTGAAGCCTACGAGAAAGTTTGTCTGCCT-AGACACCCAGCTCATGAAGTTAGCTAGAAGTACCAGGCAG---TGACAGCCACCCTGGAGAAGAGGAAGGAGAAGGCCAAGATCCACTACCAGAAGAAGAAACAGCTTATGAGGCTGCAGAAA
i chlSab2.chr17            I 550 C 0
s manLeu1.NW_012099233v1     134427 1740 +    290775 ctatgttgtgattttccttttgaggcttgcccaaaatgccacactgtatcttttcccaccactgatacctttagtgcttattaggtctattaagtcacatggccaaagcagtaccacatggctgatatgacagcctagaacaactgcagagcccatgtctgctctgggcttcagtcagtcgctagtaaactgttccatgtggtattcccatgagcatggaatatgcttcctctagaaactaaataggacaaccaaacattCTCTACCCTGGAGAAGGGGA-GGGAGAACACCAAGATTC-----------------ACTAGTGGAAGAAG-AAACAGCTCATGAGGCTACAGAAGCAGGTGGAAAAGAACGTGGAGAAGAAAATTGACAAATATACACAGGTCTCCCCAAGACCTATGGATTCCTGGTCTGAGCCTAATAAAGACTGTTTATTCCAAAACACACACAAACAAAAAACACTCCTGTATTATAAATTattctgtgtaatggtgtgttactgtgcatctctttccagttctgcattagtggtgttaagtGTGaaatgcaataatgtgttcttactttagagggatatcctggcacgaagtttaaaaacttcgaagatgtggaggatgctgaatcttcacagggtatatctcccactctctggagtgcatttgtcttaccagtgtcgccaatatgcttgtcctcatggctcgttctgtttgattaataagatattattgatacagtggaacaatgtgatgttttgtagaatgtccagagggtccaCGTTcagtggtgtgt----tgcagctagttcatactgcctcatagagtcaacagttaaattttcagaaattgtgcaaaccagttgttaaacatgactattatttt--aataagttatTTTAAGACATAGGTAACAAATCCCTAAGCTCTTCATTTTCTAGGTATT----TATCTTACCATATTTTCTATACTATTCTGGTTATTTATATCTATTATGTCTGTATAATAAAAATACTAAATAATGTTGTCTG---TATAATAAAAATATTCTGGATCGGTGATGAGCAACAATCACCATCTTTCGTTTGAGTTTCATGGCCATGAGACCAACCCCATGCACTGCTGCTCTGAGACCTGCCAGCCACTCCCATTCCTTGAGTGTGGTCCTCCTGGCTCAGAAGTGATTTTCCATTAGCCTGTCTTTTCATTTAAACATGAACTCCGCTCTGCCCATCACTGTCTGTGTGCAGTCACAGGTAGAGGGAGAGCCTTCAGGTGGCACCCTCAGCACTTCCCAACCCTTTCCCTCCTTCTAGGCCAGAAGGTGGTGGTCGT---------GAGCATCAACATTTCTGGCAATTTCTACAGAAACAAGTTGAAGTACCTGGCCTTTCCCCAGGCCTTTCTCCGCAAGCAGATGAACATCAACCCTTCTCGAGGCCCTGCTATTTCTCGGCCCCAGAGGCATCTTCTGGTGGATGGTGCAAGGCCGGCTGCCCCAAAAGACCCAGCGAGGCCAGGCCACCCTGAACCACCTCAAGGTGTCTGATGACATTCCGCCGCCCTATGACAAGAAAAAGCGATAGTGGTTCCTGCTGCCCTCAAGGCTGTGTGTCTGAAGCCTACAAGAAAGTTTGTCTGCCT-AGACACCCGGCTCATGAAGTTAGCTGGAAGTACCAGGCAG---TGACAGCCACCCTGGAGAAGAGGAAGGAGAAGGCCAAGATCCACTACCAGAAGAAGAAACAGCTTATGAGGCTGCAGAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2588929 1748 -   3067355 ctatgttgtgattttccttttgaggcttgcccaaaatcccacactgtatcttttcccaccactgatacctttagtgcctattaagtctattaagtcgcacggccaaagcagtaccacatggctgatgtgacagcctagaacaactgcagaccccatgtctgctctgggcttcagtcagtcactagtaaactgttccatgtggtattcccatgagtgtggaatatgcttcctctagaaactaaataggacaacaaagcattCTCTACCCTGGagaagagga-aggagaagaccaagattc-----------------actagtagaagaag-aaACAGCTCATGAGGCTACAGAAGCAGGCGGAAAAGAACATGGAGGAGAAAACTGACAAATACACACAGGCGTCCCCAAGACCTATGGATTCCTGGTCTGAGCCTAATAAAGACTGTTTATTCCAAAACACGCACAAATGAAAAACACCtctgtattataaattattctgtgtaatggtgtgttactgtgcatctctttccagttctgcattagtggtgttaagtGTGaaatgcaataacgtgttcttactttagagggatgtcctggcatgaggtttaaaaacttcaaagatgtgaaggatgctgaatcttcacagggtatatctgccactctctggagtgcatttgtcttaccagtgtcgccaatatgcttgccctcatggctcgttctgtttgattaataagatattgttgatacagtggaacaatgtgatgttttgcagaatgtccaGAAAGTCCACGTTcagtggtgtgt----tgcagctagttcatcctgccttatggagccaacagttaaattttcagaaattgtgcaaatcagttgttaaacatgactattatttt--agtaagttattttaaaacataggtaacaaatccctaagctcttcattttctacgtact----tatcttaccatattttctatactattctggttatttatatctgttatgtctgtataataaaaatactaaatgatgttgtCTG---TATAATAGAAATATTCTGGATTGGTGATGAGCAACAATCACCATCT-TCGTTTGAGTTTCATGGCCATGAGACCAACCCCATGCACTGCTGCTCTGAGACCTGCCAGCCACTCCCATTCCTTGAGTGCGGTCCTCCTGGCTCAGAAGTGATTTTCCATTAGGTTGTCTTTTAATTTAAACATGAACTCTGCTCTGCCCATCACTGTCTGTGTGCAGTCACAGGTAGAGGGACAGCCTTCAGGTGGCACCCTCAGCACTTCCCAACCCTTTCCCTCCTTCTAGGCCAGAAGGTGGTGGTCGTGCGCTGTGAGAGCATCAACATTTCTGGCAATTTCTACAGAAACAAGTTGAAGTACCTGGCCTTTCCGCAGGCCTTTCTCCGCAAGCAGATGAACACGAACCCTTCTCGAGGCCCTGCCATTTCTCGGCCCCAGAGGCATCTTCTGGTGGATGGTGCAAGGCTGGCTGCCCCAAAAGACCCAGCGAGGCCAGGCCACCCTGAACCACCTCAAGGTGTCTGATGGCATTCCGCCACCCTATGACAAGAAAAAGCGATAGTGGTTCCTGCTGCCCTCAAGGCTGTGTGTCTGAAGCCTATGAGAAAGTTTGTCTGCCT-AGACACCCGGCTCATGAAGTTAGCTGGAAGTACCAGGCAG---TGACAGCCGCCCTGGAGAAGAGGAAGGAGAAGGCCAAGATTCACTACCAGAAGAAGAAACAGCTTATGAGGCTGCAGAAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           178825 1731 -    242197 ctatgttgtgattctcctctggaggcttgcccaaaatgccacactatatc-tttcccaccactgatacctttagtgccc-cagagtctattaagtcatatagccaaagcagtgccagatggccggtacaacagcctagaacagctgcagggcccatttctgctctgggcttcagtcagtcactagtaaactgttccatgtggtattcccatgagtgtggaataggcttcccctagaacct---taagacaaccaagcattCACCATCCTGAAGAAGAGGAAAGGAAAAGGCCAAGATTCTGGTTTCAAGAGCTGTTTCTACTGAAAGAAG-AAATAGCTTGTCAGGCTACTGAAACAGGCAGAAAAGGACGTGGAGAAGAAAACTGGCAAATACACACAGGTTTCTTCAAGACCCGTGGACCTCTGGCCTGAGCCTGATAAAGACT---------AACAAGCAAACAAACAAAAACCACCTCTGTATTATAAACTCTTctgtgtaatggtgtattattgtgcatctctttccaactctgcattagtagtgttaagtGTGaaatgcaacaatgtgttcttactttagagggatgtcctagcgtgaagtctaaaaacttcaaagatatgaaggatgctgaatcttcacagaatatatctcccactccctggagtgcatttgtcttgccagtgctgccaatgtgcttgccctcatggctcattctgtttgattagtaatatattgttgatagaggggaacaatgtgatgttttgtggaatgtccaGAAGGTCTGCCCTcagtgatgtgc----tgcagttagctcatacagcctcgtggagccaaatgttaaattttccgaaattttgtaaatcaattgttaaatataactagtgttttaaaataaattatattaagacataggtaacacattcctaaaatcttcagtttctaggtatttaactatcttaccgtattttctatactcttcttgctatttata----ttatgtccctgtaataaaaatactaaataatgttgtCTG---TATAATAAAAATATTCTGGATCAGTGATGAGCAACAATCACCATCTTTCATATGAGTCT--GGGCCATGAGACCAG-CCCATGTA---CTGCTCTGAGACCTG-CAGCCACTCCCGTTTCTGGAATGCAGACCTCCTAGCTCAGAATTAATTTTCCATTAGGCTCTCTTTTACTTTAAACATGAACTCCACTCTGCCCATCACTGTC--TGTGCAGTCATAAGTAGAGGTAGAGCCTTCAGATGGCACCCTCAGCACTTCCTAACCCCTTCTCTCCCTCTAGGCTGGAATA---TGGTCATGCACTGTGAGAGCGTCAACAGTTCTTGCAATTTCTAC----CCTAGGTGAAGTACCT------------GGCCTTTCTCCACAAGTGGATGAACACCAGTCCTTCTTGAGGCCCTACCACTTCCCAGCCCCAGCCACATCTTCTGGTGGATGGTGCAAGGCCAGCTGCCCCACGAGACCCAGCGAGGCCAGGCCACTCTGAACCACTTCAAGGTGTTTGATGGTACTGCACCACCCTGTGACAACAAAAAGCCATGGTGATTCCTGCTGCCCTCAAGGTTGTGCGCCTGAAGCCTATGAGAAAGTTTGTCTGCCTGGGGTACTCGGCTCATGAGGTTGGCTGGAAGTACCAGGCAGTGATGACAGCCACCATTGAGAAGAGGAAGGTGAAGGCCAAGATCCACTACCAGAAGAAGAAACAGCTCATGAGGCTACAGAAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     172742 1733 -   1771730 ctatgttgtgattctcctctggaggcttgtccaaaatgccacactatatcttttcccaccactgatacctttagtgccc-cagagtctactaagtcatatggccaaagcagtgccagatggctggtatgacagcctagaacagctgcagggtccatttctgctctgggcttcagttagtcactagtaaactgttccatgttgtattcccatgagtgtggaataggcttcccctagaacct---taagaCAATCAAACATTCTCCACCCTGAAGAAGAGGAAAGGAGAAGGCCAAGATTCTGGTTTCAAGAGCTGTTTCTACTGAAAGAAG-AAATAGCTCGTCAGGCTACAAAAACAGGCAGAAAAGAACGTGGAGAAGAAAATGGGCAAATACACACAGGTTTCCTCAAGACCCATGGACCCCTGGCCTGAGCCTGATAAAGACT---------AACAAACAAACAAACAGAAACCACTTCTGTATTATAAACTCTTCTGTGTAACGGTGTATTATTATACATCTCTTTCCAACTCTTCATTAGCGGTGTTAAGtgtgaaatgcaacaatgtgttcttactttagaaggatgtcctagcatgaagtctaaaaacttgaaagatgtggaagatgctgaatcttcacaggatatatctcccactccctggggtgcatttgtcttgccaatgccgccaatatgcttgccctcatggctcattctgtttgattagtaagatattgttgatagaggggaacaatgtgatgttttgtggaatgtccagaaggtcTGCCCTcagtggtgtgc----tgcagttagctcatactgccacatggagccaaatgttaaattttcagaaattttgcaaaccaataattaaatataactagtattttaaaataagttatattaaGGCATAGATAACACATTCCTAAAATCTTCAGTTTCTAGGTATTTAACTATCTTACCATATTTTCTGTACTCTTCTGGCTATTTATA----TTATGTCTCTATAATAAAAATACTAAATAATGTTGTTTG---TATAATAAAAAAATTCTGAATCAGCTATGAGAAACAATCACCATCTTTCATATGAGGCT--GGGCCATGAGACCAG-CCCATGTA---CTGCTCTGAGACCTG-CAGCCACTCCCATTCCTGGGATGCAGACCTCCTAGCTCAGAAGTAATTTTCCATTAGGCTATCTTTTAATATAAACATGAATTCCACTCTGCCCATCACTGTCTGTGTGCAGTCACAGGTAGAGGTAGAGCCTTCAGGTGGCACCCTCAGCACTTCCTAACACTTTCCCTCCCTCTAGGCTGGAATACGGTGGTCATGCACTGTGAGAGCGTCAACATTTCTTGCAATTTCTAC----CTAAGTTGAAGTACCT------------GGCCTTTCTCCAAAAGCGGATGAACATCAACCCTTCTCGATGT----TCATTTCCCAGTCCCAGCCACATCTTCTGGTGGATGGTGCAAGGCCCACTGCCCCAAGAGACCCAGCAAGGCCAGGCTACTCTGAACCACCTCAAGGTGTTTGATGGTACTGCACCGCCCTGTGACAAGAAAAAGCCATAGTGGTTCCTAATGCCCTCAAGGTTGTGCGTCTGAAGCCTACGAGAAAGTTTGTCTGCCTGGGGTACCCGGCTCATGAGGCTGGCTGGAAGCACCAGGCAGTGATGACAGCCACCCTGGAGAAGAGGAAGGTGAAGGCCAAGATCCGCTACCAGAAGAAGAAACAGCTCATGAGGCTACAGAAA
i cebCap1.NW_016107755v1   C 0 I 348
s aotNan1.NW_018509740v1     247363 1727 -    457564 ctatgttgtgattctcctctggaggcttgcccaaaatgccacactatatcttttcccaccactaatacttttagtgccc-cagagtctattaagtcatatgaccagagcagtgccagatggctggtacaacagcctagaacagctgcagagtccatttctgctctgggcttcagtcagtcactagtaaactgttccatgtggtattcccatgagtgtgaaataggcttctcctagaacct---taagacaaccaagcattCCCCACCCTGAAGAAGAGGAAAGGAGAAGGCCAAGATTCTGGTTCCAAGAGCTGTTTCTACTGAAAGAAG-AAATAGCTCGTGAGGCTACAGAAACAGGCAGAAAAGAACGTGGAGAAGAAAATTGGCAAATACCCACAGGTTTCCTCAAGACCCATGGACCACTGGCCTGAACCTGATAAAGact---------aacaaacaaacaaacaaaAACCACCTCTGTATTATAAACTCTTctgtgtaatggtgtattattgtgcatctctttccaactctgcattagcggtgttaagtGTGAAATGAAATAATGTGTTCTTACTTTAGAGGGATGTCCTAGAGTGAAGTCTGAAGACTTCAAAGATGTGGAGGATGctgaatcttcacaggatatatctcccactccctggagtgcatttgtcttaccagtgctgccaatatgcttgccctcatggcttattctgtttgattagtaagatattgtggatagaggggaacactgtgatgttttgtggaatgtccggaaggtcTGCCCTcagtggtgtgc----tg---------catactacctcacagagccaaatgttaaattttcagaaattttgcaaaccaattgttaaatataactagtattttaaaat--gttatattaAGACATAGGTAACACATTCCTAAAATCTTCAGTTTCTAGGTATTTAACTATCTTACTATATTTTCTATACTCTTCTTGCTATTTATA----TTATGTCTCTATAATAAAAATACTAAATAATGTTGTCTG---TATAATAAAAGTATTCTGTATCAGTGATGAGCAACAATCACCATCTTTCAAATGAGTCT--TGGCCATGAGACCAG-CCCATGTA---CTGCTCTGAGACCTG-CAGCCACTCCCGTTCCTGGGATGCAGACCTTCTAGCTCAAAAGTAATTTTCCATTGGGCTATCTTTTAATTTAAACATGAACTCCACTCTGCCCATCACTGTCTGTGTGCAGTCACAGGTAGAGGTAGAGCCTTCAGGTGGCACCCTCAGCACTTCGTAACCCTTTCCCTCCCTCTAGGCTGGAATAAGGTGGTCGTGCACTGCAAGAGCGTCAACATTTCTTGCAATTTCTACCG--CCAAGTTGAAGTACCT------------GGCCTTTCTCCAACAACAGATGAACACCAACCCTTCTCAAGGCCCTACCATTTCCCAGCCCTAGCCGCATCTTCTGGTGGATGGTGCAAGGCCCGCTGCCCAACGAGACCCGGCGAGGCCAGGCCACTCTGAACCACCTTAAGGTGTTTGATGGTACTTCACTGCCCTGTGACAAGAAAAAGCCATGGTGGTTCCTAATACCCTCAAGGTTGTGCGTCTGAAGCCTATGAGAAAGTTTGTCTGCCTGGGGTATCC-GCTCATGAGGTTAGCTGGAAGTACCAGGCAATGATGACAGCCACCCTGGGGAAGAGGAAGGTGAAGGCCAAGATCCACTACCAGAAGAAGAAACAGCTCATGGGGCTACAGAAA
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=112206.000000
s hg38.chr6_GL000254v2_alt   848343 18 +   4827813 TAGGTGGAAAAGAACATG
s panTro5.chr6             29811050 18 + 175400573 TAGGTGGAAAAGAACATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30045682 18 + 173848474 TAGGTGGAAAAGAACATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5849079 18 +   6154872 TAGGTGGAAAAGAACATG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30042354 18 + 172585720 TAGGCGGAAAAGAACATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29704800 18 - 170955103 TAGGCGGAAAAGAACATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2750969 18 -   2996164 TAGGCGGAAAAGAACATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     504406 18 +    766320 TAGGCAGAAAAGAACATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28960435 17 -  71996105 T-GGCGGAAAAGAACATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     136167 18 +    290775 TAGGCAGAAAAGAACATG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2590677 18 -   3067355 TAGGCGGGAAAGAACATG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           180556 18 -    242197 AAGGCAGAAAAGAACATG
i saiBol1.JH378357         C 0 I 440
s aotNan1.NW_018509740v1     249090 18 -    457564 GAGGCGGAAAAGAACATG
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e cebCap1.NW_016107755v1     174475 348 -   1771730 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=8727.000000
s hg38.chr6_GL000254v2_alt   848361 2 +   4827813 AA
s panTro5.chr6             29811068 2 + 175400573 AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30045700 2 + 173848474 AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5849097 2 +   6154872 AA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30042372 2 + 172585720 AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29704818 2 - 170955103 GA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2750987 2 -   2996164 AA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     504424 2 +    766320 AA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28960452 2 -  71996105 AA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     136185 2 +    290775 AA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2590695 2 -   3067355 AA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           181014 2 -    242197 ag
i saiBol1.JH378357         I 440 C 0
s aotNan1.NW_018509740v1     249108 1 -    457564 -G
i aotNan1.NW_018509740v1   C 0 I 377
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e cebCap1.NW_016107755v1     174475 348 -   1771730 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=2861663.000000
s hg38.chr6_GL000254v2_alt   848363 431 +   4827813 AAAGAAAACTGACAAAT-ACACACAGGTCTCCTCAAGATCCATGGACTTCTGGTCTGAGCCTAATAAAGACTGTTTGTTTATTCCTC--AAaaacaaa--caaacaa-aa---aaaaacCCtctgtattataaattattctgtgtaatggtgtgttaccatacatttctctacaactctgcattttcagtaatctcacattgacagtttaaaattggccatggtgagaatatttacactgcagaaatcagcaaatgatgtaaatcaaggc-ttttttGCCTGGACTTG-CAGCACAtc------catgtccc-----attggaccctattatgacgggagagttttaacatggtactgaagcaaaaatgtaaatgtaaatgtacacttatatccata-cctgtaaattcaaactgcctttggtctttcttcctgatagtatttgaaaagaacac
s panTro5.chr6             29811070 432 + 175400573 AAAGAAAACTGACAAAT-ACACACAGGTCTCCTCAAGACCCATGGACTTCTGGTCTGAGCCTAATAAAGACTGTTTGTTTATTCCTC--aaaaacaaa---aaacaa-aaaacaaaaaCCCTC-GTATTATAAATTattctgtgtaatggtgtgttaccgtacatttctctacaactctgcattttcagtaatctcacattgacagtttaaaattggccatggtgagaatatttacactgcagaaatcagcaaatgatgtaaatcaaggc-ttttttGCCTGGACTTG-CAGCACAtc------catgtccc-----attggaccctattatgacgggagagttttaacatggtactgaagcaaaaatgtaaatgtaaatgtacacttatatccata-cctgtaaattcaaactgcctttggtctttcttcctgatagtatttgaaaagaacac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30045702 424 + 173848474 AAAGAAAACTGACAAAT-ACACACAGGTCTCCTCAAGACCCATGGAC-TCTGGTCTGAGCCTAATAAAGACTGTTTGTTTATTCCTC--AAAAACAAA---AAAC--------AAAAACCCTC-GTATTATAAATTattctgtgtaatggtgtgttaccgtacatttctctacaactctgcattttcagtaatctcacattgacagtttaaaattggccatggtgagaatatttacactgcagaaatcagcaaatgatgtaaatcaaggc-ttttttGCCTGGACTTG-CAGCACAtc------catgtccc-----gttggaccctattatgacgggagagttttaacatggtactgaagcaaaaatgtaaatgtaaatgtacacttatatccata-cctgtaaattcaaactgcctttggtctttcttcctgatagtatttgaaaagaacac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5849099 433 +   6154872 AAAGAAAACTGACAAAT-ACACACAGGTCTCCTCAAGACCCATGGACTTCTGGTCTGAGCCTAATAAAGACTGTTTGTTTATTCCTC--aaaaacaaa---aaacaacaaaaaaaaaCCCCtctgtattataaattattctgtgtaatggtgtgttaccgtacatttctctacaactctgcattttcagtaatctcacattgacagtttaaaattggccatggtgagaatatttacactgcagaaatcagcaaatgatgtaaatcaaggc-ttttttGCCTGGACTTG-CAGCACAtc------catgtccc-----attggaccctattatgacgggagagttttaacatggtactgaagcaaaaatgtaaatgtaaatgtacacttatatccata-cctgtaaattcaaactgcc-ttggtctttcttcctgatagtatttgaaaagaacac
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30042374 412 + 172585720 AAAGAAAACTGACAAAT-ACACACAGGTCTCCTCAAGACCCAGGGACTTCTAGTCTGAGCCTAATAAAGACTGTTTGTTTATTC------aaaaaaaaaaaaaaa---------aaaaCCCTCTGTATTATAAATTCTTCTGCGtaatggtgtgttaccatacatttctctacaactctgcattttcagtaatctcacattgacagtttaaaattggccatggtgagaatatttacactatag-----------------aaatCAAGGC-TTTTTTGCC-GGAGTTG-CAGCACATC------CATGTCCCTATTATATGGACCCTATTATAATGGGAGAGTTTtaacatggtactgaagcaaaaatgtaaatgtaaatgtacacttatattcataccctgtaaatttaaactgcctttggtctttcttcctgatagtatttgaaaataacac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29704820 409 - 170955103 AAAGAAAACTGACAAAT-ACACACAGGTCTCCTCAAGACCCATGGACTTCTGGTCTGAGCCTAATAAAGACCGTTTGTTTATTC------AAAAAAAA---CCAC---------AAAACCCTCTGTATTATAAATTCTTctgtgtaatggtgtgttaccgtacatttctctacaactctgcattttcagtaatctcacattgacagtttaaaattggccatggtgagaatatttacactatag-----------------aaatCAAGGC-TTTTTTGCC-GGAGTTG-CAGCACATC------CATGTCCCTATTATATGGACCCTATTATAATGGGAGAGTTTTAACATGGTActgaagcaaaaatgtaaatgtaaatgtacacttatattcataccctgtaaatttaaactgcctttggtctttcttcctgatagtatttgaaaagaacac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2750989 410 -   2996164 AAAGAAAACTGACAAAT-ACACACAGGTCTCCTCAAGACCCATGGACTTCTGGTCTGAGCCTAATAAAGACCGTTTGTTTATTC------AAAAAAAA--CCCAC---------AAAACCCTCTGTATTATAAATTCTTctgtgtaatggtgtgttaccgtacatttctctacaactctgcattttcagtaatctcacattgacagtttaaaattggccatggtgagaatatttacactatag-----------------aaatCAAGGC-TTTTTTGCC-GGAGTTG-CAGCACATC------CATGTCCCTATTATATGGACCCTATTATAATGGGAGAGTTTtaacatggtactgaagcaaaaatgtaaatgtaaatgtacacttatatccataccctgtaaattcaaactgcctttggtctttcttcctgacagtatttgaaaagaacac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     504426 410 +    766320 AAAGAAAACTGGCAAAT-ACACACAGGTCTCCTCAAGACCCATGGACTTCTGGTCTGAGCCTAACAAAGACCGTTTGTTTATTC------AAAAAAAA---ACCC---------AAAACCCTCTGTATTATAAATTCTTctgtgtaatggtgtgttactgtacgtttctctacaactctgcattttcagtaatctcacattgacagtttaaaattggccatggtgagaatatttacactacag-----------------aaatCAAGGCTTTTTTTGCC-GGAGTTG-CAGCACACC------CATGTCCCTATTATATGGACCCTATTATAATGGGAGAGTTTtaacatggtactgaagcaaaaatgtaaatgtaaatgtacacttatatccataccctgtaaattcaaactgcctttggtctttcttcctgatagtatttgaaaagaacac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28960454 408 -  71996105 AAAGAAAACTGACAAATAACACACAGGTCTCCTCAAGACCCACGGACTTCTGGTCTGAGCCTAATAAAGACCGTTTGTTTATTT------AAAAAAAA---AA-----------AAAACCCTCTGTATTATAAATTCTTctgtgtaatggtgtgttactgtacatttctctacagctctgcattttcagtaatctcacattgacattataaaattggccatggtgagaatatttacactatag-----------------aaatCAAGGC-TTTTTTGCC-GGAGTTG-CAGCACATC------CATGTCCCTATTATATGGACCCTACTATAATGGGAGAGTTTTAACATGGTActgaagcaaaaatgtaaatgtaaatgtacacttatatccataccctgtaaattcaaactgcctttggtctttcttcctgatagtatttgaaaagaacac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     136187 410 +    290775 AAAGAAAACTGGCAAAT-ACACACAGGTCTCCTCAAGACCCATGGACTTCTGGTCTGAGCCTAACAAAGACCGTTTGTTTATTC------AAAAAAAA---AACC---------AAAACCCTCTGTATTATAAATTCTTctgtgtaatggtgtgttactgtacgtttctctacaactctgcattttcagtaatctcacattgacagtttaaaattggccatggtgagaatatttacactatag-----------------aaatCAAGGCTTTTTTTGCC-GGAGTTG-CAGCACACC------CATGTCCCTATTATATGGACCCTATTATAATGGGAGAGTTTtaacatggtactgaagcaaaaatgtaaatgtaaatgtacacttatatccataccctgtaaattcaaactgcctttggtctttcttcctgatagtatttgaaaagaacac
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2590697 406 -   3067355 AAAGAAAACTGACAAAT-ACACACAGGTCTCCTCCAGACCCATGGACTTCTGGTCTTAGCCTAATAAAGACCATTTGTTTATGC------AAAAAAAA---A------------AAAACCCTCTGTATTATAAATTCTTctgtgtaatggtgtgttactgtacatttctctacaactctgcattttcagtaatctcacattgacaatttaaaattggccatagtgagaatattcacactatag-----------------aaatCAAGGC-TTTTTTGCC-GGAGTTG-CAGCACATC------CATGTCCCTATTATATGGACCCTATTATAATGGGAGAGTTTtaacatggtactgaagcaaaaatgtaaatgtaaatgtacacttatatccataccctgtaaattcaaactgcctttggtctttcttcctgatagtatttgaaaagaacac
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           181016 421 -    242197 aaagaaaACTGACAAAT-ACACACAGGTCTCCTCAAGACCCATGGACTCCTGTTCTGAGCCTAATAAAGACTATTTAT-------TCaaaaaaaaaaa---aaaa---------aaaaaCTTCTGGATTATAAATTCTTctgtgtaatggtgtgttactgtacatctctctactactctgcatttttagtaatctcacattgacagtttaatattggccatggtgcaaatatttacactacagaaatcagcaaatgttgtgaatcaaggc-ttttttGCCTGGAGTTG-CAGCACATCACTgttcacgtccc-----atgggaccctattatgatgggagagttttaacatggtactgaagcaa------aactatacatgtacacttacatccatactgtgtaaattcaaactgcctttggttttccttcctgatagtacttgaaaagaacac
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     174823 428 -   1771730 aaagaaaACTGACAAAT-ACACACAGGTCTCCTGAAGACCCATGGACTCCTGGTCTGAGCCTAATAGAGACTGTTTGTTTATTCCTCAAAAAAAAACA---AAAC---------AAAAACTTCTGTATTATAAATTCTTctgtgtaatggtgtgttactgtacatctctctactactctgcatttttagtaatctcacactgacagtttaatattggccatggggcgaatatttacactacagaaatcagcaaatgatgtaaatcaaggc-ttttttGCCTGGAGTTG-CAGCACATCACTgttcatgtccc-----atgggaccctattatgatggcagagttttaacatggtactgaaacaa------aattataaatgtacacttacatccatactctgtaaattcaaactgcctttggtcttccttcctgatagtacttgaaaagaacac
i cebCap1.NW_016107755v1   I 348 C 0
s aotNan1.NW_018509740v1     249486 425 -    457564 aaagaaaACTGACAAAT-ACACACAGGTCTCCTCAAGACCCATGGACTCCTGGTCTGAGCCTAATAGAGACTGTTTATTTATTCCTCAAAAAAAAAAA---AAAC-------------ACTTCTGTATTATAAATTCTTctgtgtaatggtgtgttactgtacatctctctactactctgcatttttagtaatctcacattgacagtttaatactggccatggtgcgaatatttacacttcagaaatcagcaaatgatgtaaatcaaggc-ttttttGCCTGAGTTTGCCAGCACATCACTATTCACGTCCC-----ATGGGACCCTATTATGATGGGAGAGTTTTAACATGTTACTGAAGCAA------AATTATAAATGTACACTTACATCCATACTCTGTAAATTCAAATTGCCTTTGGTCTTCCTTCCTGACAGTACTTGAAAAGAACAC
i aotNan1.NW_018509740v1   I 377 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=18018.000000
s hg38.chr6_GL000254v2_alt   848794 3 +   4827813 att
s panTro5.chr6             29811502 3 + 175400573 att
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30046126 3 + 173848474 att
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5849532 3 +   6154872 att
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30042786 3 + 172585720 att
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29705229 3 - 170955103 att
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2751399 3 -   2996164 att
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     504836 3 +    766320 att
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28960862 3 -  71996105 att
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     136597 3 +    290775 att
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2591103 3 -   3067355 att
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           181437 3 -    242197 att
i saiBol1.JH378357         C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            17736 6010 +  18854210 T
e aotNan1.NW_018509740v1     249911 0 -    457564 C
e cebCap1.NW_016107755v1     175251 0 -   1771730 C
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=530053.000000
s hg38.chr6_GL000254v2_alt   848797 123 +   4827813 cagccaggcacggtggctcacgtctgtaatcccagcattttgggaggctgaggcaggcagatcacgaggtcaggagttaaagaccagtctgatcaatatggtgaaaccctgtctctactaaaa
s panTro5.chr6             29811505 123 + 175400573 cagccaggcacggtggctcacgtctgtaatcccagcattttgggaggctgaggcaggcagatcacgaggtcaggagttaaagaccagtctgatcaatatggtgaaaccctgtctctactaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30046129 123 + 173848474 cagccaggcacggtggctcacgtctgtaatcccagcattttgggaggctgaggcaggcagatcacgaggtcaggagttaaagaccagtctgatcaatatggtgaaaccctgtctctactaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5849535 123 +   6154872 cagccaggcacggtggctcacgtctgtaatcccagcattttgggaggctgaggcaggcagatcacgaggtcaggagttaaagaccagcctgatcaatatggtgaaaccctgtctctactaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30042789 116 + 172585720 catccaggcgcagtggctcacgtctgtaatcccagcactttgggaggctgaggcaggcagatcacaaggtcaggagtt--agaccagctgga-caatatggtgaaacc----ctctactaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29705232 116 - 170955103 catccaggcgcagtggctcacgtctgtaatcccagcactttgggaggctgaggcaggcagatcacaaggtcaggagtt--agaccagctgga-caatatggtgaaacc----ctctactaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2751402 116 -   2996164 catccaggcgcagtggctcacgtctgtaatcccagcactttgggaggctgaggcaggcagatcacaaggtcaggtgtt--agaccagctgga-caatatggtgaaacc----ctctactaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     504839 116 +    766320 catccaggcgcagtggctcacgtctgtaatcccagcactttgggaggccgaggcaggcagatcacgagatcaggagtt--agaccagcctga-caatatggtgaaacc----ctctactaaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28960865 116 -  71996105 catccaggcgcagtggctcacgtctgtaatcccagcactttgggaggccgaggcaggcagatcacgaggtcaggagtt--agaccagcctga-caatatggtgaaacc----ctctactaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     136600 116 +    290775 catccaggcgcagtggctcacgtctgtaatcccagcactttgggaggccgaggcaggcagatcacgagatcaggagtt--agaccagcctga-caatatggtgaaacc----ctctactaaaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2591106 116 -   3067355 catccaggcgcagtggctcacatctgtaatcccagcactttgggagtccgaggcaggcagatcacgaggtcaggagtt--agactagcctga-caatatggagaaacc----ctctactaaaa
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           181440   0 -    242197 C
e otoGar3.GL873550            17736 6010 +  18854210 T
e aotNan1.NW_018509740v1     249911   0 -    457564 C
e cebCap1.NW_016107755v1     175251   0 -   1771730 C
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=814947.000000
s hg38.chr6_GL000254v2_alt   848920 157 +   4827813 atacaaaaattagccaggcgtggtggc--------------------attcgcc----------------tgtagtcccagctactcaggaggctgaggcaggagaatcgctcgaacccgggagggggaggttgcagtgag-ccaagatcatgccattgcactccagcctgggcaac--agtgagattccatctca
s panTro5.chr6             29811628 157 + 175400573 atacaaaaattagccaggcgtggtggc--------------------gttcgcc----------------tgtagtcccagctactcaggaggctgaggcaggagaatcgctcgaacccgggagggggaggttgcagtgag-ccaagatcgtgccattgcactccagcctgggcaac--agtgagattccatctca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30046252 157 + 173848474 atacaaaaattagccaggcgtggtggc--------------------gttcgcc----------------tgtagtcccagctactcaggaggctgaggcaggagaatcgctcgaacccgggagggggaggttgcagtgag-ccaagatcgtgccattgcactccagcctgggcaac--agtgagattccatctca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5849658 158 +   6154872 atacaaaaattagccaggcatggtggc--------------------gttcgcc----------------tgtagtcccagctactcaggaggctgaggcaggagaatcgctcgaacccgggagggggaggttgcagtgagtccaagatcgtgccattgcactccagcctgggcaac--agtgagattccatctca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30042905 159 + 172585720 atacaaaaattagccgggcgtggtggc--------------------gttcgcc----------------tgcagtcccagctactcaggaggctgaggcaggaggatcgcttgaactcgggaggcagaggttgcagagag-ccaagatcgcgccgttgcactccagcctggacaacaaagtgagattccatctca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29705348 159 - 170955103 atacaaaaattagccgggcgtggtggc--------------------gttcgcc----------------tgcagtcccagctactcaggaggctgaggcaggagaattgcttgaactcgggaggcagaggttgcagagag-ccaagatcgcgccgttgcactccagcctggacaacaaagtgagattccatctca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2751518 159 -   2996164 atacaaaaattagccgggcgtggtggc--------------------gttcgcc----------------tgcagtcccagctactcaggaggctgaggcaggagaattgcttgaactcgggaggcagaggttgcagagag-ccaagatcgcgccgctgcactccagcctggacaacaaagtgagattccatctca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     504955 159 +    766320 atacaaaaattagctgggcgtggtggc--------------------gttcgcc----------------tgcagtcccagctactcaggaggctgaggcaggaggatcgcttgaactcgggaggcagaggttgcagagag-ccaagatcgcgccattgcactccagcctgggcaacaaagtgagattccatctca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28960981 159 -  71996105 atacaaaaattagctgggcatggtggc--------------------gttcgcc----------------tgcagtcccagttactcaggaggctgaggcaggagaattgcttgaactcgggaggcagaggttgcagagag-ccaagatcacgccgttgcactccagcctggacaacaaagtgagattccatcttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     136716 159 +    290775 atacaaaaattagctgggcgtggtggc--------------------gttcgcc----------------tgcagtcccagctactcaggaggctgaggcaggaggatcgcttgaactcgggaggcagaggttgcagagag-ccaagatcgcgccattgccctccagcctgggcaacaaagtgagattccatctca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2591222 159 -   3067355 atacaaaaattagccgggcgtggtggc--------------------attcgcc----------------tacagtcccagctactcaggaggctgaggcaggagaatcgcttgaactcaggaggcagaggttgcagagag-ccaagatcgtgccgttgcactccagtctgggcaacaaagtgagattccatctca
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550            11726 192 +  18854210 acaaaaaaaatagccaggcgttgtggcaggtaccacaactacttggtacccgccaagtagtacaagtgtttatagtcccaactacttgggaagctgagactagagaactgcttaagcccaagaggttgaggttgctgtgag-ctgtgat---gtcatggcactctacctaggacaacatagtgagactctgtctca
i otoGar3.GL873550         T 6010 C 0
e mm10.chr17               57817732 80210 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           181440   0 -    242197 C
e aotNan1.NW_018509740v1     249911   0 -    457564 C
e cebCap1.NW_016107755v1     175251   0 -   1771730 C
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=45721.000000
s hg38.chr6_GL000254v2_alt   849077 9 +   4827813 aaaagaaaa
s panTro5.chr6             29811785 9 + 175400573 aaaagaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30046409 8 + 173848474 aaaag-aaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5849816 9 +   6154872 aaaagaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30043064 9 + 172585720 aaaagaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29705507 9 - 170955103 aaaagaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2751677 9 -   2996164 aaaagaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     505114 9 +    766320 aaaagaaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28961140 9 -  71996105 aaaagaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     136875 9 +    290775 aaaagaaaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2591381 4 -   3067355 -----aaaa
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550            11918 9 +  18854210 aaaaaaaac
i otoGar3.GL873550         C 0 I 518
s mm10.chr17               57897942 9 -  94987271 aaaaggaaa
i mm10.chr17               I 80210 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           181440 0 -    242197 C
e aotNan1.NW_018509740v1     249911 0 -    457564 C
e cebCap1.NW_016107755v1     175251 0 -   1771730 C
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=68414.000000
s hg38.chr6_GL000254v2_alt   849086 14 +   4827813 gaaaagaacacatt-----
s panTro5.chr6             29811794 14 + 175400573 gaaaagaacacatt-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30046417 14 + 173848474 gaaaagaacacatt-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5849825 14 +   6154872 gaaaagaacacatt-----
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30043073 14 + 172585720 gaaaagaacacact-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29705516 14 - 170955103 gaaaagaacacact-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2751686 14 -   2996164 gaaaagaacacact-----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     505123 14 +    766320 gaaaagaacacact-----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28961149 14 -  71996105 gaaaagaacacact-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     136884 14 +    290775 gaaaagaacacact-----
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2591385 14 -   3067355 gaaaagaacacatt-----
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57897951 19 -  94987271 gaaaagaaGTCGATTTAGT
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           181440  0 -    242197 C
e otoGar3.GL873550            11927 518 +  18854210 I
e aotNan1.NW_018509740v1     249911  0 -    457564 C
e cebCap1.NW_016107755v1     175251  0 -   1771730 C
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=15717.000000
s hg38.chr6_GL000254v2_alt   849100 3 +   4827813 --att
s panTro5.chr6             29811808 3 + 175400573 --att
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30046431 3 + 173848474 --att
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5849839 3 +   6154872 --att
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30043087 3 + 172585720 --att
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29705530 3 - 170955103 --att
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2751700 3 -   2996164 --att
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     505137 3 +    766320 --att
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28961163 3 -  71996105 --att
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     136898 3 +    290775 --att
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2591399 3 -   3067355 --att
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     175251 3 -   1771730 --att
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     249911 3 -    457564 --ATT
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57897970 3 -  94987271 GCA--
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           181440 0 -    242197 C
e otoGar3.GL873550            11927 518 +  18854210 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=3133618.000000
s hg38.chr6_GL000254v2_alt   849103 412 +   4827813 caccagattaatagccatataac------atggacctgaaaccgtgctaatcaggcacaacagctgtaattacagctatttcttggttgagtttgtgctagtctggtcatctttcaagt---tgcatctgatatttgtagtgaccagactggtgaattaaatgtgaaatatgatagaaacaaacccccgcaccctttaaaggtggcctcaatcagccatttcccttgaattgtgatattgttcttgatt---------cactgtctttgcggtaagaggtgtagatt--cagggcttccacttcaatctgtagctcgtactccacagactaaagaactatgtggggattctgccaatggccaagcatgtgcattccagttacagatttagagactacagaaatgactactgggtagatccatggacctaGTA
s panTro5.chr6             29811811 412 + 175400573 caccagattaatagccatataac------atggacctgaaaccgtgctaatcaggcacaacagctgaaattacagctatttcttggttgagtttgtgctagtctggtcatctttcaagt---tgcatctgatatttgtagtgaccagactggtgaattaaatgtgaaatatgatagaaacaaacccccgcatcctttaaaggtggcctcaatcagccatttcccttgaattgtgatattgttcttgatt---------cactgtctttgtggtaagaggtgtagatt--cagggcttccacttcaatctgtagctcgtactccacagactaaagaactatgtggggattctgccaacagccaagcatgtgcattccagttacagatttagagactgcagaaatgactactgggtagatccacggacctagta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30046434 412 + 173848474 caccagattaatagccatataac------atggacctgaaaccgtgctaatcaggcacaacagctgaaattacagctatttcttggttgagtttgtgctggtctggtcatctttcaagt---tgcatctgatatttgtagtgaccagactggtgaattaaatgtgaaatatgatagaaacaaacccccgcatcctttaaaggtggcctcaatcagccatttcccttgaattgtgatattgttcttgatt---------cactgtctttgtggtaagaggtgtagatt--cagggcttccacttcaatctgtagctcgtactccacagactaaagaactatgtggggattctgccaacagccaagcatgtgcattccagttacagatttagagactgcagaaatgactactgggtagatccacggacctagta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5849842 412 +   6154872 caccagattaatagccatataac------atggacctgaaaccgtgctaatcaggcacaacagctgtaattacagctatttcttggttgagtttgtgctagtctggtcatctttcaagt---tgcatctgatatttgtagtgaccagactggtgaattaaatgtaaaatatgatagaaacaaacccccgcatcctttaaaggtggcctcaatcagccatttcccttgaattgtgatattgttcttgatt---------cactgtctttgtggtaagaggtatagatt--cagggcttccacttcaatctgtagctcgtactccacagactaaagaactatgtggggattctgccaacggccaagcatgtgcattccagttacagatttagagactgcagaaatgactactgggtagatccatggacctagta
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30043090 412 + 172585720 caacagattaatagctataaaac------atggacctgaaaccgtgttaatcaggcacaacagctgcaattacagctatttcctggttgggtttgtgctagtctggtcacctttcaaga---tgcctctaatttttgtagtgaccagacaggtgaattaaatgtgaaatatgataggaatgaaccctcacatccattaaaggtggcatcaatcagccatttcccttgaattgtgatattgttcttgatt---------tactgtctttgtggtaagaggtgtagatt--caggtcttccacttgaatctgtagttcttactccacagattaaagaactatgtggggattctgccaactgccaagcatgtgcattccagttacagatttaaaggccacagaaatgactactgagtagatccatggacGTAGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29705533 412 - 170955103 caacagattaatagctataaaac------atggacctgaaaccgtgttaatcaggcacaacagctgcaattacagctatttcctggttgggtttgtgctagtctggtcacctttcaaga---tgcctctgattttcgtagtgaccagacaggtgaattaaatgtgaaatctgataggaatgaaccttcacatccattaaaggtggcatcaatcagccatttcccttgaattgtgatattgttcttgatt---------tactgtctttgtggtaagaggtgtagatt--cagagcttccacttgaatctgtagttcttactccacagattaaagaactatgtggggattctgccaactgccaagcatgtgcattccagttacagatttaaaggccacagaaatgactactgagtagatccatggacgtagta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2751703 412 -   2996164 caacagattaatagctataaaac------atggacctgaaaccgtgttaatcaggcacaacagctgcaattacagctatttcctggttgggtttgtgctagtctggtcacctttgaaga---tgcctctgattttcgtagtgaccagacaggtgaattaaatgtgaaatctgataggaatgaaccctcacatccattaaaggtggcatcaatcagccatttcccttgaattgtgatattgttcttgatt---------tactgtctttgtggtaagaggtgtagatt--caggtcttccacttgaatctgtagttcttactccacagattaaagaactatgtggggattctgccaactgccaagcatgtgcattccagttacagatttaaaggccacagaaatgactactgagtagatccatggacGTAGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     505140 412 +    766320 caacagattaatagctatataac------atggacctgaaaccgtgttaatcaggcacaacagctgcaattacagctatttcttggttgggtttgtgctagtctggtcacctttcaaga---tgcctctgatttttgtagtgaccagacaggtgaattaaatgtgaaatatgataggaatgaaccctcacatccattaaaggtggcatcaatcagccatttcccttgaattgtgatattgctcttgatt---------tactgtctttgtggtaagaggtgtagatt--cagggcttccacttgaatctgtagttcttactccacagattaaagaactatgtggggattctgccaactgccaagcatgtgcattccagttacagatttaaaggccacagaaatgactactgagtagatccatggacGTAGTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28961166 412 -  71996105 caacagattaatagctatataac------atggacctgaaaccgtgttaatcaggcacaacagctgcaattacagctatttcttggttgggtttgtgctagtctggtcacctttgaaga---tgcctctgatttctgtagtgaccagacaggtgaattaaatgtgaaatatgataggaatgaaccctcacatccattaaaggtggcatcaatcagccatttcccttgaattgtgatattgttcttgatt---------tactgtctttgtggtaagaggtgtagatt--cagggcttccacttgaatctgtagttcttactccacagattaaagaactatgtggggattctgccaactgccaagcatgtgcattccagttacagatttaaaggctgcagaaatgactactgggtagatccatggacctagta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     136901 412 +    290775 caacagattaatagctatataac------atggacctgaaaccgtgttaatcaggcacaacagctgcaattacagctatttcttggttggatttgtgctagtctggtcacctttcaaga---tgcctctgatttttgtagtgaccagacaggtgaattaaatgtgaaatacgataggaatgaaccctcacatccattaaaggtggcatcaatcagccatttcccttgaattttgatattgttcttgatt---------tactgtctttgtggtaagaggtgtagatt--cagggcttccacttgaatctgtagttcttactccacagattaaagaactatgtggggattctgccaactgccaagcatgtgcattccagttacagatttaaaggccgcagaaatgactactgagtagatccatggacATAGTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2591402 412 -   3067355 caacagattaatagctatataac------atggacctgaaaccatgttaatcaggcacaacagctgcaattacagctatttcttggttgggtttgtgctagtctggtcacctttcaaga---tgcatctgatttttgtagtgaccagacaggtgaattaaatgtgaactatgataggaacaaaccctcacatactttaaaggtggcatcaatcagccatttcccttgaattgtgatactgttcttgatt---------cactgtctttgtggtaagaggtgtagatt--cagggcttccacttgaatctgtagttcttactccacagattaaagaactatgtggggattctgccaactgccaagcatgtgcatcccagttacagatttaaaggctgtagaaatgactactgggtagatccatggacctaGTA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           181440 397 -    242197 caccagattactagctatataac------atggacctgaaagcatgttaatcaggcacaacagctgcaattacagctatttctaggttgagtttgcactagtctcgtcatctttcaaga---tacatctgacttttgtagtgaccagactggtgaattaaatgtgaaatatgatagggacaaacctctgaatcctttaaaggttagatcaatcagccatttcccttgaattgtgatattgttcttgatt---------cattgtctttgtggtaagaggtgtagatt--cagggtttccacttgaatctgtagctcttactccacagactaaagaactatgtgaggattctgccaactgccaagcatgtgcattccaat---------------tacagaaatgactactgagtagatccatggacctaGTA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     175254 411 -   1771730 cgccagattaatagctatataac------atggacctgaaagtgtgttaatcaggcacaaca-ctgcaatcacagctatttccgggttgagtttgtgctagcctgatcatctttcaaga---tacatctgacatttgtagtgaccagactggtgaattaaatgtgaaatatgatagggacaaacctctgcatcctttaaaggtggcatcaatcagcaatttcccttgaattgtgctattgttctcgatt---------aactgtctttgtggtaagaggtgtagatt--cagggcttctacttgaatctgtagctcttactccacagactaaagaaccatgtgaggattctgccaactgccatgcatgtgcattccaattacagatttggagactacagaaatgactactgagtagatccatggacctagta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     249914 414 -    457564 CGCCAGATTAATAGCTATATAAC------ATGGACCTGAAAGCGTGTTcatcaggcacaacagctgcaattacagctatttctgggtggagtttgtgctagtctcgtcatcttttaaagactaacatctgacttttgtagtgaccagactggtgaattaaatgtgaaatataaaagggacaaacctctgcatcctttaaaggtggcatc-atcagccatttcccttgaattgtgatactgttcttgatt---------cactgtctttgtagtaagagacgtagatt--cagggcttccacttgaatctgtagctcttactccacagactaaagaactatgtgaggattctgccaactgccaagcatgtgcattccaattacagatttggagactacagaaatgactactgggtagatccatggacctagta
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57897973 350 -  94987271 TGCAAGACTGAATGCAGAAAGACGGTGATGCAGACCCAGACTCATGAAACCTGGGCATCACCACTATAGCTGTGGCTATTCCTTAGTTTCCTTTGTGGAATTCC-ATCATTTCT-AAGA---TACCTCTGGGTTAGGAGATGATTA-------GAATCACATGGCTGAAGTAATGGGGTCAACC------ATCCTTTA----------CATCCTGCTTATCATTTTACACTGTGATAATCTTCTGGATTACAACACTGTTCTGCCTCTGTGGAGAGAG-TGTAGATTTGCATGTTTAccact----gctatggctgtcactcaacataccaaagaaccaatgtaggattctgccaactaccaaatatACACAGTCAGAGCATA-------------------------------------------------
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            11927 518 +  18854210 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=1997479.000000
s hg38.chr6_GL000254v2_alt   849515 281 +   4827813 CATGCCATTTATTAGCTGATCTCATAG-GCTCCCTTTCTAATGGAAGAGAAGCATAACGATTCAGTT-----ATATGAAGATTGGCTAAATGTTCTAAGTAC---TCTCCAAACCCAGAGCTTTATAATT--CTCTGTTACTACA-GTGTGCTCCATCTCAG----AATAACTAAATAGAAAAGGAGGAAGCTGAGAACTTTAAAAACTGAGGTCCTGAATAGATGAATCATAAG--------CCTGAGA---GGACTATCAGGATGCCCGGGACTCACTGGAGGT----GGGAGTAGA---GACACTGTCCTTT-----
s panTro5.chr6             29812223 281 + 175400573 catgccattTATTAGCTGATCTCATAG-GCTCCCTTTCTAATGGAAGAGAAGCATAACGATTCAGTT-----ATATGAAGGTTGGCTAAATGTTCTAAGTAC---TCTCCAAACCCAGAGCTTTATGATT--CTCTGTTACTACA-GTGTGCTCCATCTCAG----AATAACTAAATAGAAAAGGAGGAAGCTGAGAACTTTAAAAACTGAGGTCCTGAATAGATGAATCATAAG--------CCTGAGA---GGACTATCAGGATGCCCGGGACTCACTGGAGGT----GGGAGTAGA---GACACTGTCCTTT-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30046846 281 + 173848474 catgccattTATTAGCTGATCTCATAG-GCTCCCTTTCTAATGGAAGAGAAGCATAACGATTCAGTT-----ATATGAAGGTTGGCTAAATGTTCTAAGTAC---TCTCCAAACCCAGAGCTTTATGATT--CTCTGTTACTACA-GTGTGATCCATCTCAG----AATAACTAAATAGAAAAGGAGGAAGCTGAGAACTTTAAAAACTGAGGTCCTGAATAGATGAATCATAAG--------CCTGAGA---GGACTATCAGGATGCCCGGGACTCACTGGAGGT----GGGAGTAGA---GACACTGTCCTTT-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5850254 281 +   6154872 catgccattTATTAGCTGATCTCATAG-GCTCCCTTTCTAATGGAAGAGAAGCATAACAATTCAGTT-----ATATGAAGATTGGCTAAATGTTCTAAGTAC---TCTCCAAACCCAGAGCTTTATAATT--CTCTGTTACTACA-GTGTGCTCCATCTCAG----AATAACTAAATAGAAAAGGAGGAAGCTGAGAACTTTAAAAACTGAGGTCCTGAATAGATGAATCATAAG--------CCTGAGA---GGACTATCAGGATGCCCGGGACTCACTGGAGGT----GGGAGTAGA---GACACTGTCCTTT-----
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30043502 283 + 172585720 CATGCCATTTATTAGCTGACCCCGTAG-GCTTCCTTTCTAATGGAAGAGAAGCATAACAATTCAGTT-----ATATGAAGCCTGGCTAAATGTCCTAAGTAC---TCTCCACATCCAGAGCTTTATAAT----TCTGTTACTACA-ATGTGATCCATCGCAG----AAGAATTAAATAGAAAAGGAGGAAGCTGAGAACTTAAAAAACTGAGGTTCTGAATGGATGAATCATAAG--------CTTGAGA---GGACTATCAGGATGCCCGGGACTCACTGGATGTGGTGGGGAAGAGA---GACACTGTCCTTT-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29705945 283 - 170955103 catgccatttattagctgaccccgtag-gcttcctttctaatggaagagaagcataaCAATTCAGTT-----ATATGAAGACTGGCTAAATGTCCTAAGTAC---TCTCCAAATCCAGAGCTTTATAAT----TCTGTTACTACA-ATGTGATCCATCGCAG----AAGAATTAAATAGAAAAGGAGGAAGCTGAGAACTTAAAAAACTGAGGTTCTGAATGGATGAATCATAAG--------CTTGAGA---GGACTATCAGGATGCCCGGGACTCACTGGATGTGGTGGGGAAGAGA---GACACTGTCCTTT-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2752115 283 -   2996164 CATGCCATTTATTAGCTGACCCCGTAG-GCTTCCTTTCTAATGGAAGAGAAGCGTAACAGTTCAGTT-----ATATGAAGACTGGCTAAATGTCGTAAGTAC---TCTCCAAATCCAGAGCTTTATAAT----TCTGTTACTACA-ATGTGATCCATCGCAG----AAGAATTAAATAGAAAAGGAGGAAGCTGAGAACTTAAAAAACTGAGGTTCTGAATGGATGAATCATAAG--------CTTGAGA---GGACTATCAGGATGCCCGGGACTCACTGGATGTGGTGGGGAAGAGA---GACACTGTCCTTT-----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     505552 283 +    766320 CATGCCATTTATTAGCTGACCCCATAG-GCTTCCTTTCTAATGGAAGAGAAGCATAATGATTCAGTT-----ATATGAAGATTGGCTAAATGTCCTAAGTAC---TCTCCAAACCCAGAGCTTTATAAT----TCTGTTACTACA-ATGTGATCCATTGCAG----AAGAATTAAATAGAAAAGGAGGAAGCTGAGAACTTAAAAAACTGAGGTTCTGAATGGATGAATCATAAG--------CTTGAGA---GGACTATCAGGATGCCCAGGACTCACTGGATGTGGTGGGGAAGAGA---GACACTGTCCTTT-----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28961578 283 -  71996105 catgccatgtattagctgatcccatag-gctccctttctaatggaagagaagcataaCAATTCAGTT-----ATATGAAGATTGGCCAAATGTCCTAAGTAC---TCTCCAAACCCAGAGCTTTATAAT----TCTGTTACTACA-ATGTGATCCATCGCAG----AAGAATTAAATAGAAAAGGAGGAAGCTGAGAACTTAAAAAACTGAGGTTCTGAATGGATGAATCATAAG--------CTTGAGA---GGACTATCAGGATGCCCAGGACTCACTGGATGTGGTGGGGAAGAGA---GACACTGTCCTTT-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     137313 283 +    290775 CATGCCATTTATTAGCTGACCCCATAG-GCTTCCTTTCTAATGGAAGAGAAGCATAACGATTCAGTT-----ATATGAAGATTGGCTAAATGTCCTAAGTAC---TCTCCAAACCCAGAGCTTTATAAT----TCTGTTACTACA-ATGTGATCCATTGCAG----AAGAATTAAATAGAAAAGGAGGAAGCTGAGAACTTAAAAAACTGAGGTTCTGAATGGATGAATCATAAG--------CTTGAGA---GGACTATCAGGATGCCCAGGACTCACTGGATGTGGTGGGGAAGACA---GACACTGTCCTTT-----
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2591814 282 -   3067355 CATGCCATTTATTAGCTGACCCCATAG-GCTCCCTTTCTAATTGAAGAGAAGCATAACGATTCAGTT-----ATATGAAGATTGGCTAAATGTTCTAAGTAC---TCTCCAAATCCAGAGCTTTATAATT--CTCTGTTACTACA-ATGTGATCCATCAC-------AGAATTAAATAGAAAAGGAGGAAGCTGAGAACTTAAACAACTGAGATTCTGAATGGATGAATCATAAG--------CTTGAGA---GGACTATCAGAATGCCTGGGACTCACTGGATGTGGTGGGGAAGAGA---GACACTGTCCTTT-----
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           181837 291 -    242197 CATGCCGTTTATTAGCTGACCCCATAG-GCTCCCATTCTAATGGAAGAGAAGCATAATGATTCAGTTACATTATATGAAGATTGGCTAAATGTCCTATGTAC---TCTCCAACCCCATAGTTTTATTATT--CTCTGTTACTACA-GTATGGTCCATCTCAGAAAGAATAATTAAATAGAAAAGGAAGAAGTTGAAAACTTTAAAAACTAGAGTACTGAATGGATGAATCATAGG--------ATTGAGA---GGAATATCAGGATGTCTGGGGCTCACTGGAGGTGCTGGG---TAGA---GACATTGCCCTTT-----
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     175665 289 -   1771730 catgccttgtattagctgaccccatag-gctcccattctaaTGGAAGAGAAGCATAAAGATTCAGTTACATCATATGAGGACTGGCTAAATGTCCTAAGTA-----CTTCAACCCCAGAATTTTATAATT--CTCTGTTACTACA-GTGTGGTCCATCTCAGAGAAAATAATTAAATAGAAAAGGAAGAAGTTGAGAACTTTAAAAACTGGGGTACTGAATGGACGAATCATAGG--------CTTGAGA---GGAATATCAGGATGCCTGGGACTCACTGGAGGTCGTGGG---TAGA---GACATTGTCCTTT-----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     250328 291 -    457564 catgccgtttattagctgaccccatag-gctcccattctgatggaagagaagcataatgatTCAGTTACATTATACGAAGATTGGCTAAATGGCCTAAGTAC---TCTTCAACCCCAGAGTTTTATAATT--CTCTGTTACTACA-GTGTGGTCCGTCTCAGAGAAAATAATTAAATAGAAAAGGAAGAAGTTGAGAACTTTAAAAACTGGGGTGCTGAATGGATGAATCATAGG--------CTTGAGA---GGAATATCAGGATGCCTGGGACTCACTGGAGGTGGTAGG---TGGA---GACACTGTCCTTT-----
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            12445 266 +  18854210 caagccTGTTGTTGCATGTTTTTGTGT-GCTCTT-----------ACAGGAATGTCACAA------------GAACgatgattgcctgcttgt-----gtacatttctcaaaatccagtg------aatt--gtccattgaaatatatgcatttcattatgtaaatgatacctTGATTTAAAAGGAGAAAGGAAACAAACCAAAGTAAGGTGGTATTGAATGAGCACAGTCTAAGACAGGCAATCTAAGATTGGCACTATGAG-ATGTTGGGA------TGATGGGGGTGAGGAG--AA---AATAGTGCCCTTC-----
i otoGar3.GL873550         I 518 C 0
s mm10.chr17               57898323 263 -  94987271 ---ACCATTTG--AACTGGGCTAGTGGAACCTATGTTCT-------------CATTATGATTCA-TC-----AGATGAGGGGTAGACAAATATCTCAAGAGA---TCTACAAACCTAGGATTTGAACATCTGTATTATTATTACA-ATATAGAATATTTCAA----AGGAATTAAGCAGAAAGGGAAGAATTTGAGAAGTGTTAATGGTATAGTCCTATATGGATA-----------------TATGAAA---GAACTAAGAAGATGTCTGG-----ATGGTGGGTGAAGAAGAGCAGATGTGACATTGGTTATTCCAAA
i mm10.chr17               C 0 T 73012
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=2425227.000000
s hg38.chr6_GL000254v2_alt   849796 300 +   4827813 TTCTTCCTGTTGACAGAAAGAAGCAATGAGTGACCTCTTTTACCTACCACAGTGATGACTATTGTTGGCATATTTCCTATAGATATTCCCCTGCCCCTTTTACCATAATT---TGTGGCTAATGAATTGTCTGTGGGCTATGG-ACCCTAGAGTCTCAGCAGAATTAATGAGCTCTTTCCCTCCGTGGGA---------------------TCC----CTCTACCACCATACC--ATGTCAACA-TTTCTACCTCCAATGCCACTAAAACAGAGGCACACCTCTGCCTAGACTGAGGGGGAAAA--TTGTTGG--CAAAGAACTCAATGGCAAAGA
s panTro5.chr6             29812504 294 + 175400573 TTCTTCCTGTTGACAGAAAGAAGCAATGAGTGACCTCTTTTACCTACCACAGTGATGACTATTGTTGGCATATTTCCTATAGATATTCCCCTGCCCCCTTTACCATAATT---TGTGGCTAATGAATTGTCTGTGGGCTATGG-ACCCTAGAGTCTCAGCAGAATTAATGAGCTCTTTCCCTCCGTGGGA---------------------TCCCTCTCTCTACCACCATACC--ATGTCAACA-TTTCTACCTCCAATGCCACTAAAACAGAGGCACACCTCTGCCTAGACTGAGGGGGAAAA--TTGTTGG--CAAAGAACTCA----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30047127 294 + 173848474 TTCTTCCTGTTGACAGAAAGAAGCAACGAGTGACCTCTTTTACCTACCACAGTGATGACTATTGTTGGCATATTTCCTATAGATATTCCCCTGCCCCCTTTACCATAATT---TGTGGCTAATGAATTGTCTGTGGGCTATGG-ACCCTAGAGTCTCAGCAGAATTAATGAGCTCTTTCCCTCCGTGGGA---------------------TCCCTCTCTCTACCACCATACC--ATGTCAACA-TTTCTACCTCCAATGCCACTAAAACAGAGGCACACCTCTGCCTAGACTGAGGGGGAAAA--TTGTTGG--CAAAGAACTCA----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5850535 294 +   6154872 TTCTTCCTGTTGACAGAAAAAAGCAATGAGTGACCTCTTTTACCTACCACAGTGATGACTATTGTTGGCATATTTCCTATAGATATTCCCCTGCCCCCTTTACCATAATT---TGTGGCTAATGAATTGTCTGTGGGCTATGG-ACCCTAGAGTCTCAGCAGAATTAATGAGCTCTTTCCCTCCGTGGGA---------------------TCCCTCTCTCTACCACCATACC--ATGTCAACA-TTTCTACCTCCAATGCCACTAAAACAGAGGCACACCTCTGCCTAGACTGAGGGGGAAAA--TTGTTGG--CAAAGAACTCG----------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30043785 294 + 172585720 TTCTTCCTATTGACAGAAAGAAGCAGTGAGGGACCTCTTTTACCTACCACAGTGATGACTATTGTTGGCATATTTCCTATAGATATTCCCCTGCCCCCTTTACCATAATT---AGTGGCTAATGAATTGTCTATGGGCTATGG-ACCCTAGGGTCTCAGCAGAATTAATGAGCTCTTTCCCTCTGTGGGA---------------------TCCCTCTCTCTACCACCATACC--ATGTCAACA-TTTCTACCTCCAATGCCACTAAAACACGGGCATACCTCTCCTTAGACGGAGGGGAAAAA--TTGTTGG--CAAAGAACTCG----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29706228 294 - 170955103 TTCTTCCTATTGACAGAAAGAAGCAGTGAGGGACCTCTTTTACCTACCACAGTGATGACTATTGTTGGCATATTTCCTATAGATATTCCCCTGCCCCCTTTACCATAATT---AGTGGCTAATGAATTGTCTATGGGCTATGG-ACCCTAGGGTCTCAGCAGAATTAATGAGCTCTTTCCCTCTGTGGGA---------------------TCCCTCTCTCTACCACCATACC--ATGTCAACA-TTTCTACCTCCAATGCCACTAAAACACGGGCACACCTCTCCTTAGACGGAGGGGAAAAA--TTGTTGG--CAAAGAACTCG----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2752398 294 -   2996164 TTCTTCCTATTGACAGAAAGAAGCAGTGAGGGACCTCTTTTACCTACCACAGTGATGACTATTGTTGGCATATTTCCTATAGATATTCCCCTGCCCCCTTTACCATAATT---AGTGGCTAATGAATTGTCTATGGGCTATGG-ACCCTAGGGTCTCAGCAGAATTAATGAGCTCTTTCTCTCCGTGGGA---------------------TCCCTCTCTCTACCACCATACC--ATGTCAACA-TTTCTACCTCCAATGCCACTAAAACACAGGCACACCTCTCCTTAGACGGAGGGGAAAAA--TTGTTGG--CAAAGAACTCG----------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     505835 294 +    766320 TTCTTCCTATTGACAGAAAGAAGCAGTGAGGGACCTCTTTTACCTACCACAGTGATGACTATTGTTGACATATTTCCTATAGATATTCCCCTGCCCCCTTTACCATAATT---AGTGGCTAATGAATTGTCTGTGGGCTATGG-ACCCTAGGGTCTCAGCAGAATTAATGAGCTCTTTCCCTCCGTGGGA---------------------TCCCTCTCTCTACCACCATACC--ATGTCAACA-TTTCTACCTCCAATGCCACTAAAACACAGACACACCTCTCCTTAGACGGAGGGGaaaaa--ttgttgg--caaagaactcg----------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28961861 294 -  71996105 TTCTTCCTATTGACAGAAAGAAGCAGTGAGGGACCTCTTTTACCTACCACAGTGATGACTATTGTTGGCATATTTCCTATAGATATTCCCCTGCCCCCTTTACCATAATT---AGTGGCTAATGAATTGTCTGTGGGCTATGG-ACCCTAGGGTCTCAGCAGAATTAATGAGCTCTTTCCCTCCGTGGGA---------------------TCCCTCTCTCTACCACCATACC--ATGTCAACA-TTTCTACCTCCAATGCCACTAAATCACAGGCACACCTCTTCTTAGATGGAGGGGAAAAA--TTGTTGG--CAAAGAACTCG----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     137596 294 +    290775 TTCTTCCTATTGACAGAAAGAAGCAGTGAGGGACCTCTTTTACCTACCACAGTGATGACTATTGTTGGCATATTTCCTATAGATATTCCCCTGCCCCCTTTACCATAATT---AGTGGCTAATGAACTGTCTGTGGGCTATGG-ACCCTAGGGTCTCAGCAGAATTAATGAGCTCTTTCCCTCCGTGGGA---------------------TCCCTCTCTCTACCACCATACC--ATGTCAACA-TTTCTACCTCCAATGCCACTAAAACACAGACACACCTCTCCTTAGACGGAGGGGAAAAA--TTGTTGG--CAAAGAACTCG----------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2592096 294 -   3067355 TTCTTCCTATTGACAGAAAGAAGCAGTGAGGGACCTCTTTTACCTACCACAGTGATGACTATTGTTGGCATATTTCCTATAGATATTCCCCTGCCCCCTTTACCATAATT---AGTGGCTAATGAATTGTCTGTGGGCCATGG-ACCCTAGGGTCTCAGCAGAATTAATGAGTTCTTTCTCTCCGTGGGA---------------------TCCCTCTCTCTACCACCATACC--ATGTCAACA-TTTCTACCTCCAATGCCACTAAAACAGAGGCGCACCTCTCCCTAGATGGAGGGGGAAGA--TTGTTGG--CAAAGAACTCG----------
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           182128 289 -    242197 TTCTTCCTAATGACAGAAAGAAACAGTGAGTGACCTCTTTTACCTGCCACAGTGATGACTATTGTTGGCATATTTCCTCTAGATATTCGCCTGCCCCCTTTACCATAATT---AGTGGCTAATTAATCATCTGTGGGCTATGG-ACCCTAGGGTCTCAGCAGAATTAATGAGGTTTTTCCCTCTGTGGAA---------------------TCCCTCCCTCTACCACCATAC-------CAACA-TTTCTGCCTCCAGTGCCGCTAAAACAAAGGCACACTTCTCCCTAGACTGAGGGGGAAAG--TTGTTGG--CAAAGAACTCA----------
i saiBol1.JH378357         C 0 I 10
s cebCap1.NW_016107755v1     175954 289 -   1771730 TTCTTCCTAATAACAGAAAGAAACAGTGAGTGACCTCTTTTACCTACCACAGTGATGACTA-TGTTGGCATATTTCCTCTAGATATTCCCCTGGCCCCTTTACCATAATT---AGTGGCTAATT----GTCTGTGGGCTATGG-ACCCTAGGGTCTCAGCAGAATTAATGAGCTCTTTCCCTCCATGGGA---------------------TCCCTCTCTCTACCACCATACC--ATGTCAACA-TTTCTGCCTCCAGTGCCGCTAAAACAAAGGCACACTTCTCCCTAGACTGAGGGGGAAAG--TTGTTGG--CAAAGAACTCA----------
i cebCap1.NW_016107755v1   C 0 I 10
s aotNan1.NW_018509740v1     250619 273 -    457564 TTCTTTCTAATGACAGTGA---------------------TACCTACCACAGTGATGACTATTGTTGGTATATTTCCTCTAGATATTCCCCCGCCCCCTTTACCATAATC---AGTGGCTAATTAATTGTCTGTGGGCTATGG-ACCCTAGGGTCTCAGCAGAATTAATGAGCTCTTTCCCTCCGTGGGA---------------------TCCCTCTCTCTATCACCATACC--TTGTCAACA-TTTCTGCCTCCAGTGCCACTAAAACAAAGGCGCACTTCTCCCTAGACTGAGGGGGAAAG--TTGTTGG--CAAAGAACTCA----------
i aotNan1.NW_018509740v1   C 0 I 17
s otoGar3.GL873550            12711 285 +  18854210 CACTCCCCAGTGACACAGAGGAGCA--GAGGTGACTTTCATATTTACCACTGGGAGCACCATTGCTGGCACATTTTCTTTGAATCCTCTCTT-CGTTCTTAACCATTAGTACCAGTGGCTAATTAGCAGTCAATGGCCTAAGG-GGCCCCTAGTCTTAGCAGAATTAATGAGCTGTTTCTCTCTATGGGATGGGA---------------GTCCTGGGATCTATCCCTCTATC--TCACCATTACTCTCCGTCTCCAGTACCACTAGAAGAGGGG-----------TTAAA--GAGAGGTTAAT--TTACTGAATTGACGA---------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57825574 286 -  94987271 TTATCCCTGGTAACAAAAGG----AGTGGGTGA-CTTTCTGACTTATTCTAGTAATT-CTATTGCTGGCACACTTTCTCCAGAGAGTCTCCTGCCCCTTCTATCATAATT---ACTAGCTAA----CTATCTGTGGGCTGTGGAACCCCTGGGTCTCAGCTGAATTAATGAGATGTTTCTCTCCATAGGAGAGGAGTCCTGGGATCTGGGGTCCCTCTCTCTACCAC-ATACCTAATGTCAGGC-TTTCCACCAGCAGGGCCACTGAAAC------------------AGACTGTTTGCCAAAACCTTGCTAA--TTAAGA---------------
i mm10.chr17               T 73012 I 8
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=55902.000000
s hg38.chr6_GL000254v2_alt   850096 39 +   4827813 ACTCTATGGCAAAGAACTCGATGGCAAAGAACTCAATGG
s panTro5.chr6             29812798 19 + 175400573 --------------------ATGGCAAAGAACTCAATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30047421 19 + 173848474 --------------------ATGGCAAAGAACTCAATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5850829 19 +   6154872 --------------------ATGGCAAAGAACTCAATGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30044079 19 + 172585720 --------------------ATGTCAAAGAACTCAATGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29706522 19 - 170955103 --------------------ATGTCAAAGAACTCAATGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2752692 19 -   2996164 --------------------ATGTCAAAGAACTCAATGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     506129 19 +    766320 --------------------atgtcaaagaactcaatgg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28962155 19 -  71996105 --------------------ATGTCAAAGAACTCAATGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     137890 19 +    290775 --------------------ATGTCAAAGAACTCAATGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2592390 19 -   3067355 --------------------ATGTCAAAGAACTCAATGG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           182427  7 -    242197 --------------------------GGTATCT------
i saiBol1.JH378357         I 10 C 0
s cebCap1.NW_016107755v1     176253  7 -   1771730 --------------------------GGTATCT------
i cebCap1.NW_016107755v1   I 10 C 0
s otoGar3.GL873550            12996 29 +  18854210 ----------AAAGAGGATATTAACAGAGAAGTCCATAA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57825860  8 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e aotNan1.NW_018509740v1     250892 17 -    457564 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=32862.000000
s hg38.chr6_GL000254v2_alt   850135 5 +   4827813 CAAAG
s panTro5.chr6             29812817 5 + 175400573 CAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30047440 5 + 173848474 CAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5850848 5 +   6154872 CAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30044098 5 + 172585720 CAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29706541 5 - 170955103 CAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2752711 5 -   2996164 CAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     506148 5 +    766320 caaag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28962174 5 -  71996105 CAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     137909 5 +    290775 CAAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2592409 5 -   3067355 CAAAG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550            13025 5 +  18854210 CAAAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26200219 5 +  26524999 caaca
i canFam3.chr35            N 0 C 0
e mm10.chr17               57825860 8 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           182434 0 -    242197 C
e aotNan1.NW_018509740v1     250892 17 -    457564 I
e cebCap1.NW_016107755v1     176260 0 -   1771730 C
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=8458.000000
s hg38.chr6_GL000254v2_alt   850140 2 +   4827813 TT
s panTro5.chr6             29812822 2 + 175400573 TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30047445 2 + 173848474 TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5850853 2 +   6154872 CT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30044103 2 + 172585720 TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29706546 2 - 170955103 TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2752716 2 -   2996164 TT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     506153 2 +    766320 tt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28962179 2 -  71996105 TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     137914 2 +    290775 TT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2592414 2 -   3067355 TT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550            13030 2 +  18854210 AG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57825868 2 -  94987271 TT
i mm10.chr17               I 8 C 0
s canFam3.chr35            26200224 2 +  26524999 CT
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           182434 0 -    242197 C
e aotNan1.NW_018509740v1     250892 17 -    457564 I
e cebCap1.NW_016107755v1     176260 0 -   1771730 C
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=1499756.000000
s hg38.chr6_GL000254v2_alt   850142 178 +   4827813 CTGACCTT---GGCTTCATCCTCCCTGC--AGAGATT--TGGTGGGCTTTGGTTGGTGCAAACCctctacagttagcagatttgggttcaaacatcagctctggtgcttactaactatactgccttgggaaagttat-ttat-atttctttgtttcaacttcttcatattggaaggaagagaataat
s panTro5.chr6             29812824 178 + 175400573 GTGACCTT---GGCTTCATCCTCCCTGC--AGAGATT--TGGTGGGCTTTGGTTGGTgcacaccctctacagttagcagatttgggttcaaacatcagctctggtgcttactaactatactgccttgggaaagttat-ttat-atttctttgtttcaacttcttcatattggaaggaagagaataat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30047447 178 + 173848474 GTGACCTT---GGCTTCATCCTCCCTGC--AGAGATT--TGGTGGGCTTTGGTTGGTgcacaccctctacagttagcagatttgggttcaaacatcagctctggtgcttactaactatactgccttgggaaagttat-ttat-atttctttgtttcaacttcttcatattggaaggaagagaataat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5850855 178 +   6154872 CTGACCTT---GGCTTCATCCTCCCTGC--AGAGATT--TGGTGGGCTTTGGTTGGTgcacaccctctacagttagcagatttgggttcaaatatcagctctggtgcttactaactatactgccttgggaaagttat-ttat-atttctttgtttcaacttcttcatattggaaggaagagaataat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30044105 173 + 172585720 CTGACCTT---GGCCTCATCCTCCCCGC--AGAGATT--TGGTGGGCTTTGGTTGATgcacaccctctacagttagcagatttaggttcaaccatcagctctggtgcttact-----tactgccttgggaaagttat-ttac-atttctttgtttcaacttcttcatattggaaggaagagaataat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29706548 173 - 170955103 CTGACCTT---GGCCTCATCCTCCCCGC--AGAGATT--TGGTGGGCTTtggttgatgcacaccctctacagttagcagatttgggttcaaccatcagctctggtgcttact-----tactgccttgggaaagttat-ttac-atttctttatttcaacttcttcatattggaaggaagagaataat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2752718 173 -   2996164 CTGACCTT---GGCCTCATCCTCCCTGC--AGAGATT--TGGTGGGCTTtggttggtgcacaccctctacagttagcagatttgggttcaaccatcagctctggtgcttact-----tactgccttgggaaagttat-ttac-atttctttgtttcaacttcttcatattggaaggaagagaataat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     506155 173 +    766320 ctgacctt---ggcctcatcctccctgC--AGAGATT--TGGTGGGTTTtggttgatgcacaccctctacagttagcagatttgggttcaaccatcagctctggtgcttact-----tacagccttgggaaagttat-ttac-atttctttgtttcaacttcttcatattggaaggaagagaataat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28962181 173 -  71996105 CTGACCTT---GGCCTCATCCTCCCTGC--AGAGATT--TGGTGGGCTTtggttggtgcacaccctctacagttagcagatttgggttcaaccatcagctctggtgcttact-----tactgccttgggaaagttat-ttac-atgtctttgtttcaacttcttcatattggaaggaagagaataat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     137916 173 +    290775 CTGACCTT---GGCCTCATCCTCCCTGC--AGAGATT--TGGTGGGCTTtggttgatgcacaccctctacagttagcagatttgggttcaaccatcagctctggtgcttact-----tacagccttgggaaagttat-ttac-atttctttgtttcaacttcttcatattggaaggaagagaataat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2592416 173 -   3067355 CTGACCTT---GGCCTCATCCTCCCTGC--AGAGATT--TGGTGGGCTTTGGTTGGTgcacaccctctacagttagcagatttgggttcaaccatcagctctggtgcttact-----tactgccttgggaaagttat-ttat-atttctttgtttcaacttcttcatattggaaggaagagaataat
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           182434 175 -    242197 CTAACCTT---GGCCTCATCCTCCCTCT--AGGGATT--TGGTGGGCTTTGGTTGGTCcacagtctttacagtaagcagatttgggttcaaacatcagctctggtgcttactaactatatcgccttgggaaagttat-ttat-atttctttgtataaa---ctgcctatcagaatgaagagaacaat
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     176260 178 -   1771730 CTGACCTT---GGCCTCAGCCTCCCTCT--AGGGATT--TGGTGGGCTTTGGTTGGTAcacagtctctacagtaagcagatttgggttcaaacatcagctctggtgcttaccaagtatattgccttgggaaagttat-ttat-atttctttgTATAAACTTCTGCCAATTGGAATGAAGAGAACAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     250909 178 -    457564 CTGATCTT---GGCCTCATCCTCCCTCT--AGGGATT--TGGTGGGCTTTCGTTGGTAcacagtctctacagttagcagatttgggttcaaacatcagctctggtgcttactaactatattgccttgggaaagttat-ttat-atttctttgtataaacttctgcctattggaatgaagagaacaat
i aotNan1.NW_018509740v1   I 17 C 0
s otoGar3.GL873550            13032 179 +  18854210 -CTACCTC---TGGCTTGTGCATCTGGC--AGAGACTGATGGTGGAACAtggttggtacacagccttt-cagctagcccacctgggtttaaagcgcacctctgacgtttactagtggcactttccagaacaagtgat-tgatcctctgcatgccttcatttctttatgtagaaaggaaggtagtaat
i otoGar3.GL873550         C 0 I 41
s mm10.chr17               57825870 169 -  94987271 CCCCACTT---GGCCTCATTTTACTTCTTAGAAAAGG--CAGCAGACTGTGGTTGGTGAA--------GTGGTCAGTTCATCTGTGTTTACACATGAACTCTGGCACTTACC-ACTATATTGCAGTAACCTAGCAGA-TTAA-ACTTCCTT-TGTTAACTTGT-CATATCAAAAGGAAGATACTCAT
i mm10.chr17               C 0 I 3
s canFam3.chr35            26200226 182 +  26524999 CTGACCTCTGGGGCCTCACCTTCCCTGC--AGGGACA--TGGtgagctgaggttggcacacagcctctgcagccagcccacctaggttcaaatatcaactctcgtgctcactgactgtattgtctgaggcaagggatgtcat-ctttctctgcttcagattctttgtatcagaggagagggCACCCA
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=1857628.000000
s hg38.chr6_GL000254v2_alt   850320 232 +   4827813 atgtagagttgtGAAGGATAATcagcagtgt-ag-agtaaatgtttaataaacaacttggttggtggcagatggggagagccctaatttgtagtgtttgccaattttcatagtgtaaatattcctgccatggctgtctcaagccactgatggtttaataactgtctcacaaaattcctaaaaatttactaatcaagagataatctgagccagctccagctcatcacACACATGT--
s panTro5.chr6             29813002 232 + 175400573 atgtagagttgtGAAGGATAATcagcagtgt-ag-agtaaatgtttaataaacatcttggttggtggcagatggggagagccctaatttgtagtgtttgccaatgttcatagtgtaaatattcctgccatggctgtctcaagccactgatggtttaataactgtctcacaaaattcctaaaaatttactaatcaagagataatctgagccagctccagctcatcacACACATGT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30047625 232 + 173848474 atgtagagttgtGAAGGATAATcagcagtgt-ag-agtaaatgtttaataaacatcttggttggtggcagatggggagagccctaatttgtagtgtttgccaatgttcatagtgtaaatattcctgccatggctgtctcaagccactgatggtttaataactgtctcacaaaattcctaaaaatttactaatcaagagataatctgagccagctccagctcatcacACACATGT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5851033 232 +   6154872 atgtagagttgtGAAGGATAATcagcagtgt-ag-agtaaatgtttaataaacatcttggttggtggcagatggggagagccctaatttgtagtgtttgccaatgttcatagtgtaaatattcctgccatggctgtctcaagccactgacggtttaataactgtctcacaaaatttctaaaaatgtactaatcaagagataatctgagccagctccagctcatcacACACATGT--
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30044278 231 + 172585720 atgtagagttgtGAAGGACAATcagcagtgt-ag-gctaaatgtttaataaatatcttggttggtggcagatggggagagccctaatttgtagtgtttgccaattttcatagtgtaaatattcctgccatggctgtctcaagccactgatggtttaataactgtctcacaaaattcct-aaattttactaatcaagagatagtctcagccagctccagctcatcacACACATGT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29706721 231 - 170955103 aTGTAGAGTTGTGAAGGACAATcagcagtgt-ag-gctaaatgtttaataaatatcttggttggtggcagatggggagagccctaatttgtagtgtttgccaattttcatagtgtaaatattcctgccatggctgtctcaagccactgatggtttaataactgtctcacaaaattcct-aaattttactaatcaagagatagtctcagccagctccagctcatcacACACATGT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2752891 231 -   2996164 aTGTAGAGTTGTGAAGGACAATcagcagtgt-ag-gctaaatgtttaataaatatcttggttggtggcagatggggagagccctaatttgtagtgtttgccaattttcatagtgtaaatattcctgctatggctgtctcaagccactgatggtttaataactgtctcacaaaattcct-aaattttactaatcaagagatagtctcagccagctccagctcatcacACACATGT--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     506328 231 +    766320 aTGTAGAGTTGTGAAGGACAATcagcagtgt-ag-gctaaatgtttaataaatatcttggttggtggcagatggggagagccctaatttgtagtgtttgccaattttcatagtgtaaatattcctgccatggctgtctcaagccaccaatggtttaataactgtctcacaaaattcct-aaattttactaatcaagagatagtctcagccagctccagctcatcacACACATGT--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28962354 231 -  71996105 GTGTAGAGTTGTGAAGGACAATcagcagtgt-ag-gctaaatgtttaataaacatcttggttggtggcagatggggagagccctaatttgtagtgtttgccaattttcatagtgtaaatattcctgccatggctgtctcaagccaccaatggtttaataactgtctcacaaaattcct-aaattttactaatcaagagatagtctcagccagctccagctcatcacACACATGT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     138089 231 +    290775 aTGTAGAGTTGTGAAGGACAATcagcagtgt-ag-gctaaatgtttaataaatatcttggttggtggcagatggggagagccctaatttgtagtgtttgccaattttcatagtgtaaatattcctgccatggctgtctcaagccaccaatggtttaataactgtctcacaaaattcct-aaattttactaatcaagagatagtctcagccagctccagctcatcacACACATGT--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2592589 231 -   3067355 acgtacAGTTGTGAAGGACAATCAGCAGTGT-AG-GCTAAATGTTTAATAAACATCTTGGTTGATGGCAGATGGGGagagccctaatttgtagtgtttgccaattttcatagtgtaaatattcctggcatggctgtctcaagccaccaatggtttaataactgtctcacaaaattcct-aaattttactaatcaagagatagtctcagccagctccagctcatcacACACATGT--
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           182609 233 -    242197 atataGAGTTGTGAAGGACAATcagcaatgtaaa-ggtaaacgtttaataaacagcttggttggtggcagagggagaaagctctaatttgttgtgtttgccaattttcatagtgtaaatattcctgccatcgctgtctcaaaccaccgatggtttaataattgtctcacaaaatttctaaaaatgtattaattgagagatagtctgagccagctccagctcatcacACACATGT--
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     176438 232 -   1771730 ATATAGAATTGTGAAGGACAATcagcgatgt-aa-ggtaaatgtttaataaatggcttggttggtggcagagggagaaagccctaagttgttgtgtttgccaattttcatagtgtaaatattcttgccatcgctgtctcaagccacTGATtgtttaataattgtctcacaaaatttctaaaaatgtactaatctagagatagtctgagccagctccagctcatcacACACACGT--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     251087 233 -    457564 atataGAATTGAGAAGGACAATcagcaatgtaaa-ggtaaatgtttaataaacagcttggttggtggcagagggagaaagccccaatttgttgtgtttgccaattttcatagtgtaaatattcctgccatcgctgtctcaagccactgatggtttaataattgtctcacaaaatttctgaaaatgtactaatcaagagatagtctgagccagctccagctcatcacACACACGT--
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57826042 187 -  94987271 ATGTAGGGTTGTAAGGGACAA-------TGC-TG-----------------ACAGCTTGGCTG--GACGGATT--TAGAGTCCTCATT--TAGTTTTTGCTCTGTTTATTAGTACAAATACTCCTGGCAAGGAAGATTCTAGGTAATCATGATTGAAAAG----CTCATAAAAACCTG-ATAATTGAAGAATCAAG--------TAAGGTACCTCTAAC---AAAAACACAGGG--
i mm10.chr17               I 3 I 3
s canFam3.chr35            26200408 221 +  26524999 GAGCAGCTCTGT---GGGCAACcagagatga-actggtaactgtttggcaaccagcttgtttggggg-----agacacagaccctgcctgatgggctgaccaatttccatggcg----tactcccgccatggctggtcccagctgccaacggcataatc-ctctctcacaaagtcccc-aaaagttaccagtcaagagctcgtatgagctcgctccagcacatcCGATGGATGTGT
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            13211  41 +  18854210 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=117904.000000
s hg38.chr6_GL000254v2_alt   850552 12 +   4827813 GTGCTTAGAAAA
s panTro5.chr6             29813234 12 + 175400573 GTGCTTAGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30047857 12 + 173848474 GTGCTTAGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5851265 12 +   6154872 GTGCTTAGAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30044509 12 + 172585720 GTGCTTAGAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29706952 12 - 170955103 GTGCTTAGAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2753122 12 -   2996164 GTGCTTAGAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     506559 12 +    766320 GTGCTTAGAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28962585 12 -  71996105 GTGCTTAGAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     138320 12 +    290775 GTGCTTAGAAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2592820 12 -   3067355 GTGCTTAGAAAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           182842 12 -    242197 GTGCTTAAAAAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     176670 12 -   1771730 GTGCTTAGAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     251320 12 -    457564 GTGCTTAGAAAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            13252 12 +  18854210 gtactttaaaaa
i otoGar3.GL873550         I 41 C 0
s mm10.chr17               57826232 11 -  94987271 GTCCTTTAAAA-
i mm10.chr17               I 3 C 0
s canFam3.chr35            26200629 12 +  26524999 GTGCCTCGGAAC
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=648578.000000
s hg38.chr6_GL000254v2_alt   850564 64 +   4827813 GTGCC--AGATGGTCAGCATT-AGCAATCCCTATTGTGACCAGAGATGCAG---TTGCCCA-TTCAAGGAT
s panTro5.chr6             29813246 64 + 175400573 GTGCC--AGATGGTCAGCATT-AGCAATCCCTATTGTGACCAGAGATGCAG---TTGCCCA-TTCAAGGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30047869 64 + 173848474 GTGCC--AGATGGTCAGCATT-AGCAATCCCTATTGTGACCAGAGATGCAG---TTGCCCA-TTCAAGGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5851277 64 +   6154872 GTGCC--AGATGGTCAGCATT-AGCAATCCCTATTGTGACCAGAGATGCAG---TTGCCCA-TTCAAGGAT
i gorGor5.CYUI01015250v1   C 0 I 3089
s rheMac8.chr4             30044521 64 + 172585720 GTGCC--AGATGGCCAACATT-AGCAATCCCTATTGTGACCAGAGATGCAG---TTGCCCA-TTCAAGGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29706964 64 - 170955103 GTGCC--AGATGGCCAACATT-AGCAATCCCTATTGTGACCAGAGATGCAG---TTGCCCA-TTCAAGGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2753134 64 -   2996164 GTGCC--AGATGGCCAACATT-AGCAATCCCTATTGTGACCAGAGATGCAG---TTGCCCA-TTCAAGGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     506571 64 +    766320 GTGCC--AGATGGCCAACATT-AGCAATCCCTATTGTGACCAGAGATGCAG---TTGCCCA-TTCAAGGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28962597 64 -  71996105 GTGCC--AGATGGCCAACATT-AGCAATCCCTATTGTGACCAGAGATGCAG---TTGCCCA-TTCAAGGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     138332 64 +    290775 GTGCC--AGATGGCCAACATT-AGCAATCCCTATTGTGACCAGAGATGCAG---TTGCCCA-TTCAAGGAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2592832 64 -   3067355 GTGCC--AGATGGTCAGCATT-AGCAATCCCTATTGTGACCAGAGATGCGG---TTGCCCA-TTCAAGGAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30034923 63 + 171630274 GTGCC--GGATGGTCAGCACT-AGCAATCCCTATTGTG-CCAGAGATCCAA---TTGCCCA-TTCAAGGAT
i calJac3.chr4             N 0 C 0
s saiBol1.JH378357           182854 64 -    242197 GTGCC--AGATGGTCAGCACT-AGCGATCCCTATTGTGACCAGAGATCCAA---TTGCCCA-TTCAAGGAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     176682 64 -   1771730 GTGCA--AGATGGTCAGCACT-AGCGATCCCTATTATGACCAGAGATCCAA---TTGCCCA-TTCAAGGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     251332 64 -    457564 GTGCC--AGACGGTCAGCACT-AGCAATCCCTATTGTGACCAGAGATCCAA---TTGCCCA-TTCAAGGAG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            13264 70 +  18854210 atgcccaagaacataagcact-AGCAATCCTAACTCTTATCAGAAATCTAAGCTCTATCAATTTTAAAGGT
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57826243 63 -  94987271 ACACT--GGCTG--CAAAGTTGAATGATCCTTACTTCAATCAGAGATCAAG---CTGACCC-TTCAGAGAC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26200641 63 +  26524999 GTGCC--TGGTGGTTGGCACT-AACAATCCTTCATAAGACCGGTGACCCAA---CAG-CCA-TTCCAGGAT
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=1844910.000000
s hg38.chr6_GL000254v2_alt   850628 217 +   4827813 GCCCATTCCTT-TTTATTTT-TTT------------G------TTT-CTTCCTGATGTACAAGTGGAGGCTGGGCACCAGT----TAAGAGCTCTGTCATGGGGAATTGCTGGTACCA-------GAAGAGATTTTTATTTGATTGAAGGTAAGCAGAACCTTTGCTCTTTGGCTGTGAGATATCAGTTTCCGCCT-ATCCTCAACACTGgaggaccagatttggagttaaa-------------------------------------------------------------------------------------------------------------------cttactctaaaatcctag
s panTro5.chr6             29813310 217 + 175400573 GCCCATTCCTT-TTTATTTT-TTT------------G------TTT-CTTCCTGATGTACAAGTGGAGGCTGGGCACCAAT----TAAGAGCTCTGTCATGGGGAATTGCTGGTAGCA-------GAAGAGATTTTTATTTGATTGAAGGTAAGCAGAACCTTTGCTCTTTGGCTGTGAGATATCAGTTTCCACCT-ATCCTCAACACTGgagcaccagatttggagttaaa-------------------------------------------------------------------------------------------------------------------cgtactctaaaatcctag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30047933 216 + 173848474 GCCCATTCCTT-TTTA-TTT-TTT------------G------TTT-CTTCCTGATGTACAAGTGGAGGCTGGGCACCAAT----TAAGAGCTCTGTCATGGGGAATTGCTGGTAGCA-------GAAGAGATTTTTATTTGATTGAAGGTAAGCAGAACCTTTGCTCTTTGGCTGTGAGATATCAGTTTCCACCT-ATCCTCAACACTGgagcaccagatttggagttaaa-------------------------------------------------------------------------------------------------------------------cgtactctaaaatcctag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5854430 217 +   6154872 GCCCATTCCTT-TTTATTTT-TTT------------G------TTT-CTTCCTGATGCACAAGTGGAGGCTGGGCACCAGT----TAAGAGCTCTGTCATGGGGAATTGCTGGTAGCA-------GAAGAGATTTTTATTTGATTGAAGGTAAGCAGAACCTTTGCTCTTTGGCTGTGAGATATCAGTTTCCTCCT-ATCCTCAACACTGgagcaccggatttggagttaaa-------------------------------------------------------------------------------------------------------------------cgtactctaaaatcctgg
i gorGor5.CYUI01015250v1   I 3089 C 0
s rheMac8.chr4             30044585 227 + 172585720 GCCCATTCCTC-tttcttta-ttta-ttttttttttg------ttt-cttCCTGATGTACAAGTGGAGGCTGGGTGCTAAT----AAAGAGCTCTGTTATGGGT-ATTGCTGGTAGCA-------GAAGAGATTTTTATTTGATTGAAGGTAAGTAGAACCTTTGCTCTTTGGCTCTGAGATATCAGTTTCCACCT-ATCCTCAACACTGgagcaccagatttggagttaaa-------------------------------------------------------------------------------------------------------------------tgtactctaaaatcctag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29707028 226 - 170955103 GCCCATTCCTC-TTTATTTA-TTT--ATTTTTTTTTG------TTT-CTTCCTGATGTACAAGTGGAGGCTGGGTGCTAAT----TAAGAGCTCTGTTATGGGT-ATTGCTGGTAGCA-------GAAGAGATTTTTATTTGATTGAAGTTAAGTAGAACCTTTGCTCTTTGGCTCTGAGATATCAGTTTCCACCT-ATCCTCAACACTGgagcaccagatttggagttaaa-------------------------------------------------------------------------------------------------------------------tgtactctaaaatcctag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2753198 227 -   2996164 GCCCATTCCTCttttttttt-ttt--ttttttttttg------ttt-cttCCTGATGTACAAGTGGAGGCTGGGTGCTAAT----TAAGAGCTCTGTTATGGGT-ATTGCTGGTAGCA-------GAAGAGATTTTTATTTGATTGAAGGTAAGTAGAACCTTTGCTCTTTGGCTCTGAGATATCAGTTTCCACCT-ATCCTCAACACTGgagcaccagatttggagttaaa-------------------------------------------------------------------------------------------------------------------tgtactctaaaatcctag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     506635 224 +    766320 GCCCATTCCTC-tttttttt-ttt----tttgttttg------ttt-cttCCTGATGTACAAGTGGAGGCTGGGTGCCAAT----TAAGAGCTCTGTTATGGGT-ATTGCTGGTAGCA-------GAACAGATTTTTATTTGATTGAAGGTAAGTAGAACCTTTGCTCTTTGGCTCTGAGATATCAGTTTCCACCT-ATCCTCAACACTGgagcaccagatttggagttaaa-------------------------------------------------------------------------------------------------------------------tgtactctaaaatcctag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28962661 223 -  71996105 GCCCATTCCTC-tttatttt-ttt----ttt-ttttg------ttt-cttCCTGATGTACAAGTGGAGGCTGGGTGCCAAT----TAAGAGCTCTGTTATGAGG-ATTGCTGGTAGCA-------GAAGAGATTTTTATTTGATTGAAGGTAAGTAGAACCTTTGCTCTTTGGCTCTGAGATATCAGTTTCCACCT-ATCCTCAACACCagagcaccagatttggagttaaa-------------------------------------------------------------------------------------------------------------------tgtactctaaaatcttag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     138396 224 +    290775 GCCCATTCCTC-TTTATTTT-TTT----TTTGTTTTG------TTT-CTTCCTGATGTACAAGTGGAGGCTGGGTGCCAAT----TAAGAGCTCTGTTATGGGT-ATTGCTGGTAGCA-------GAACAGATTTTTATTTGATTGAAGGTAAGTAGAACCTTTGCTCTTTGGCTCTGAGATATCAGTTTCCACCT-ATCCTCAACACTGgagcaccagatttggagttaaa-------------------------------------------------------------------------------------------------------------------tgtactctaaaatcctag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2592896 228 -   3067355 GCCCATTCCTC-tttattta-tttatttatttatttg------ttt-cttCCTGATGTACAAGTGGAGGCTGGGTGCCAAT----TAAGAGCTCTGTTATGAGG-ATTGCTGGTAGCA-------GAAGAGATTTTTATTTGATTGAAGGTAAGTAGAACCTTTGCTCTTTGGCTCTGAGATATCAGTTTCCACCT-ATCCTCAACACTGgagcaccagatttggagttaaa-------------------------------------------------------------------------------------------------------------------catattctaaaatcctag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30034986 210 + 171630274 GCCTATTCCTT-T---TATTATTT------------G------TTT-CTTCCTGGTGTACAAATGGAGGGTGGGCAGCAAT----TAAGAGCTCTGTCATGGGGG-TTGCTGGTAGAA-------GAAGAGATTTTTATTTGATTGAAGGTAAGTAGAACCTTTACTCTTTGGCTGTGAGATAACCATTTCCACCT-GTTT-CAACACTGgagcaccagatttggagttaaa-------------------------------------------------------------------------------------------------------------------cg---tccgaaatcctag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           182918 215 -    242197 GCCTATTCCTT-TTTATTTTCTTT------------G------TTT-CTTCCTGATGTACAAACGGAGGGTGGGCACCAAT----TAAGAGCTCTGTCATGGGGGATTGCTGGTAGAA-------GAAGAAAATTTTATTTGATTGAAAGTAAGGAGAACCTTTGCTCTTTGGCTGTGAGATAACAGTTTCCACCT-GTTTGCAACACTGgagcaccaaatttggagttgaa-------------------------------------------------------------------------------------------------------------------tg---tccaaaatcctag
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     176746 214 -   1771730 GCCTATTTCTT-TTTATTTT-TTT------------G------TTT-CTTCCTGATGTACAAGTGGAGGGTGCGCACCAAG----TAAGAGCTCTGTCATGGGGGATTGCTGGTAGAA-------GAAGAGATTTTTATTTGATTGAAGGTAAGTAGAACCTTTGCACTTTGACTGTGAAATAATAGTTTTCACCT-GTTTTCAACACTGgagcaccagatttggagttaaa-------------------------------------------------------------------------------------------------------------------cg---tccaaaatcctag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     251396 214 -    457564 GCCTACTCCTT-TTTATTTT-TTT------------G------TTT-CTTCCTGATGTACAAGTGGAGGGTGGGCACCAAT----TAAGAGCTCTGTCATGGAGGATTGCTGGTAGAA-------GAAGAGATTTTTATTTGATTGAAGGTAAGTAGAACCTTTGTTCTTTGGCTATGAGATAACCGTTTCCACCT-GTTTTCAACACTGgagcaccagatttggagttaaa-------------------------------------------------------------------------------------------------------------------ca---gccaaaatcctag
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            13335 218 +  18854210 TAATATTCCTC-CATAGTTG-CTT---------TTAG------TTTGCATGGTAAGAATCAAATGGAGACAACA-ACCAATCTCATACGGTCCTGTTCGTGGGGATGCGCTTGTAGCAAGGCGATGAGGAGATTCTGACTTTATTGCAAGTAAGTTCTAAGTTTATTCCT---CTATAGTTCATCAATTTCTACAT-GTTCTCAATGGTG----------tttggaatcaaa-------------------------------------------------------------------------------------------------------------------cagggtctagagtcctgg
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57826306 329 -  94987271 ---CATCCTTC-TTTCTTAG-TTT------------G---AGTTTT-CTTCTTGATGTCCATGCAGAAAAGAGGCACCCAT----TAAAAATTTTATCATGGACAATTGCTGGCAACC-------AAA---ATACTCCTCCAGTTGAAGGTAAGTAGAGTGTTAGCCTTTCTCTCACATTATATCAGTTTCCATGT-GTCCTAAACAATAGACCCACAGATAGGGAATTAAAGGGGATGAGGGATTTTTATCTGCTTGCTTTGGGGGTTGTTTTTTATTGGTTTTGCTTTTGAAGAAAatgtaccccaggctgatcccaaacacaaatatcacatgctgctgcttcttgagcaccaagattccag
i mm10.chr17               C 0 I 151
s canFam3.chr35            26200704 203 +  26524999 ACCTACTGCTC----------TTT------------GGCAAGTCTT-CCTCCTGATGTCCACATGGAGGC-----ACCAGT----GAAGAGTTTTGTC-------ATCACTGGTGGCA-------GAGGGGGTTTTATTCTGACTCTGGGTAAGTAGAAAGTCTGTTCTTCTCCTAGGAGACATCCATTGCTACCTGGCCCCCAAgagaggagcaccagagtggaggataaa-------------------------------------------------------------------------------------------------------------------ctgggtctacactctgg-
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=1376334.000000
s hg38.chr6_GL000254v2_alt   850845 149 +   4827813 tcctagcacttattgactaggtaaccttctacaagtctcttgtcccgtctgtgactgttcac--------tttttggtaaaattgggataat-tttatctc------tttgtagggtcactgtgagaaccagatgTTCAGGGA--------GTTGTTTATCAC--------CATGCTTTG
s panTro5.chr6             29813527 145 + 175400573 tcctagcacttattgactaggtaaccttctacaagtctcttgtcccgtctgtgactgttcac--------tttttggtaaaattgagataac-tttatctc------tttgtagggtcactgtgagaatcagatgTTCAGGGA--------G----TTATCAC--------CATGCTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30048149 145 + 173848474 tcctagcacttattgactaggtaaccttctacaagtctcttgtcccgtctgtgactgttcac--------tttttggtaaaattgagataac-tttatctc------tttgtagggtcactgtgagaatcagatgTTCAGGGA--------G----TTATCAC--------CATGCTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5854647 149 +   6154872 tcctagcacttattgactaggtaaccttctacaagtctcttgtcccgtctgtgactgttcac--------tttttggtaaaattgggataat-tttatctc------tttgtacggtcactgtgagaaccagatgttcaggga--------gttgtttatcac--------catgctttg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30044812 149 + 172585720 tcctagcacttattggctaggtaaccttacataagtctcttatcttgtctgtgactgttcac--------tttttggtaaaattggaataat-tatatgtc------tttgtagggtcactgtgagaaccagatgttcaggga--------gctgtttatcac--------catgcttgg
i rheMac8.chr4             C 0 I 16
s macFas5.chr4             29707254 149 - 170955103 tcctagcacttattggctaggtaaccttacacaagtctcttatcttgtctgtgactgttcac--------tttttggtaaaattggaataat-tatatgtc------tttgtagggtcactgtgagaaccagatgttcaggga--------gctgtttatcac--------catgcttgg
i macFas5.chr4             C 0 I 4
s macNem1.NW_012011356v1    2753425 149 -   2996164 tcctagcacttattggctaggtaatcttacacaagtctcttatcttgtctgtgactgttcac--------tttttggtaaaattggaataat-tatatgtc------tttgtagggtcactgtgagaaccagatgttcaggga--------gctgtttatcac--------catgcttgg
i macNem1.NW_012011356v1   C 0 I 16
s cerAty1.NW_012002711v1     506859 149 +    766320 tcctagcacttattggctaggtaaccttatacaagtctcttatcttgtctgtgactgttcac--------tttttggtaaaattgggataat-tatatgtc------tttgtagggtcactgtgagaaccagatgttcaggga--------gctgtttatcac--------catgcttgg
i cerAty1.NW_012002711v1   C 0 I 16
s chlSab2.chr17            28962884 149 -  71996105 tcctagcatttattggctaggtaaccttatacaagtctcttatcttgtctgtgactgttcac--------tttttggtaaaactgggatgat-tatctctc------tttgtagggtcactgtgagaaccagatgttcaggga--------gctgtttatcat--------catgcttgg
i chlSab2.chr17            C 0 I 16
s manLeu1.NW_012099233v1     138620 149 +    290775 tcctagcacttattggctaggtaaccttatacaagtctcttatcttgtctgtgactgttcac--------tttttggtaaaattgggataat-tatatgtc------tttgtagggtcactgtgagaaccagatgttcaggga--------gctgtttatcac--------catgcttgg
i manLeu1.NW_012099233v1   C 0 I 16
s colAng1.NW_012115566v1    2593124 149 -   3067355 tcctagcacttattggctaggtaaccttatacaagtctcttatcttgtctgtgactgttcac--------tttttggtaaaattgggataat-tatatctc------tttgtagggtcactgtgagaaccagatgttcaggga--------gctgtttatcac--------catgcttgg
i colAng1.NW_012115566v1   C 0 I 16
s calJac3.chr4             30035196 149 + 171630274 tcctagcacttattggctaggtaaccttatacaagttacttatcccatctgtgactgttcac--------tttttggtaaaattgggttaat-tatatctc------tttgtagggttactgtgagaaccagatgttcaagga--------gctgcttaatac--------catgcttgc
i calJac3.chr4             C 0 I 21
s saiBol1.JH378357           183133 149 -    242197 tcctagcgcttattggctaggtaactttatacaagttacttatcccgtctatgactgttcac--------tttttggtaaaatcagtttaat-tatatctc------tctgtagggttactgtgagaaccagatgttcaagga--------gctgcttaacac--------catgcttgc
i saiBol1.JH378357         C 0 I 21
s cebCap1.NW_016107755v1     176960 149 -   1771730 tcctagcacttattggctagatcactttatacaagttacttatcccatctatgactattcac--------tttttggtaaaatagggttaat-tatatctc------tttgtagggttactgtgagaaccagatgttcaagga--------gctgcttaaaac--------catgcttgc
i cebCap1.NW_016107755v1   C 0 I 21
s aotNan1.NW_018509740v1     251610 149 -    457564 tcctagcacttattggctaggtaaccttatacaagttacttatcccatctgtgactgttcat--------tttttggtaaaattgggttaat-tatatctc------tctgtagggttactgtgagaaccagatgttcaagga--------gctgcttaacac--------catgcttgc
i aotNan1.NW_018509740v1   C 0 I 21
s otoGar3.GL873550            13553 140 +  18854210 tcatggcacttgttggc---------------aagctactttgcctctctgagac--tttat--------tcttccataaagaaaggataagatgtgaatcgactaacttgtagggttgttgtgagaagcaagtattccaggac-------attatttagcat--------agtgtctgg
i otoGar3.GL873550         C 0 I 21
s mm10.chr17               57826786 154 -  94987271 TCCCAACATTTGTCATGTGGGCAACCTTAGAAACCTTACTTGCC----CTGAAACTGTTCACTGTAAAGATTCACGGTAAAATTGATAAGAT--------C------TTTGCAGGGCTGATATGGAAACTAGGTGTTCAGGGA--------GCTGTTTGCCGTACACGGCACATGTGAAG
i mm10.chr17               I 151 I 10
s canFam3.chr35            26200907 156 +  26524999 gcctcacatctactggcaggttgaccttcgccaagtttctcaacc--tctaaaactgtttac--------ttcttgatgcatttggaataag-agcaccttg-----tgtgcagggttgctgtgagatcctggtgattgggtatatgagaggccatgggaaac--------agtCCACAG
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=21470.000000
s hg38.chr6_GL000254v2_alt   850994 8 +   4827813 ATGGTAGC
s panTro5.chr6             29813672 8 + 175400573 ATGGTAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30048294 8 + 173848474 ATGGTAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5854796 8 +   6154872 atggtagc
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29707407 8 - 170955103 caggaagc
i macFas5.chr4             I 4 I 4
s calJac3.chr4             30035366 8 + 171630274 ctgttagc
i calJac3.chr4             I 21 C 0
s saiBol1.JH378357           183303 8 -    242197 atgttagc
i saiBol1.JH378357         I 21 C 0
s cebCap1.NW_016107755v1     177130 8 -   1771730 atgttagc
i cebCap1.NW_016107755v1   I 21 C 0
s aotNan1.NW_018509740v1     251780 8 -    457564 atgttagc
i aotNan1.NW_018509740v1   I 21 C 0
s otoGar3.GL873550            13714 8 +  18854210 ataataac
i otoGar3.GL873550         I 21 C 0
s mm10.chr17               57826950 8 -  94987271 TTGGAAAG
i mm10.chr17               I 10 C 0
s canFam3.chr35            26201063 8 +  26524999 GTGGCAGC
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e colAng1.NW_012115566v1    2593273 16 -   3067355 I
e manLeu1.NW_012099233v1     138769 16 +    290775 I
e chlSab2.chr17            28963033 16 -  71996105 I
e cerAty1.NW_012002711v1     507008 16 +    766320 I
e macNem1.NW_012011356v1    2753574 16 -   2996164 I
e rheMac8.chr4             30044961 16 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=217992.000000
s hg38.chr6_GL000254v2_alt   851002 21 +   4827813 TACTAACAGC----AAGGGTAGCTC
s panTro5.chr6             29813680 21 + 175400573 TACTAACAGC----AAGGGTAGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30048302 21 + 173848474 TACTAACAGC----AAGGGTAGCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5854804 21 +   6154872 tactaacagc----aagggtagctc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30044977 21 + 172585720 TACTAACAGC----AAGGGTAGGTC
i rheMac8.chr4             I 16 C 0
s macFas5.chr4             29707419 21 - 170955103 TACTAACAGC----AAGGGTAGGTC
i macFas5.chr4             I 4 C 0
s macNem1.NW_012011356v1    2753590 21 -   2996164 TACTAACAGC----AAGGGTAGGTC
i macNem1.NW_012011356v1   I 16 C 0
s cerAty1.NW_012002711v1     507024 21 +    766320 tactaaCAGC----AAGGGTAGGTC
i cerAty1.NW_012002711v1   I 16 C 0
s chlSab2.chr17            28963049 21 -  71996105 TACTAACAGC----AAGGGTAGGTC
i chlSab2.chr17            I 16 C 0
s manLeu1.NW_012099233v1     138785 21 +    290775 TACTAACAGC----AAGGGTAGGTC
i manLeu1.NW_012099233v1   I 16 C 0
s colAng1.NW_012115566v1    2593289 21 -   3067355 TACTAACAGC----AAAGGTAGGTC
i colAng1.NW_012115566v1   I 16 C 0
s calJac3.chr4             30035374 21 + 171630274 tACTAACAGC----AAGGGTAGGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           183311 21 -    242197 tACTAACAGT----AAGGGTAGGTC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     177138 21 -   1771730 tactaACAGT----AAGGGTAGGTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     251788 21 -    457564 tACTAACAGC----AAGGGTAGGTC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            13722 21 +  18854210 tATTAAAACA----ATAGGTGGTTC
i otoGar3.GL873550         C 0 I 44
s mm10.chr17               57826958 21 -  94987271 TGTTAAAAGC----AAAAGCAAGGA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26201071 25 +  26524999 TACCAATAGCCCCAGCAAGTAGCTC
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=492521.000000
s hg38.chr6_GL000254v2_alt   851023 54 +   4827813 ATGGTCACTAGACTATCATAAACCCCTTTCAAAGGACCTCCCAACTCCTTCCCC
s panTro5.chr6             29813701 54 + 175400573 ATGGTCACTAGACTATCATAAACCCCTTTCAAAGGACCTCCCAACTCCTTCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30048323 54 + 173848474 ATGGTCACTAGACTATCATAAACCCCTTTCAAAGGACCTCCCAACTCCTTCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5854825 54 +   6154872 ATGGTCACTAGACTATCATAAACCCCTTTCAAAGGACCTCCCAACTCCTTCCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30044998 54 + 172585720 ATGGTCACTAGCCTATCATAAACCCCTTTCAAGGGACCTCCCAACTCCTTCCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29707440 54 - 170955103 ATGGTCACTAGCCTATCATAAACCCCTTTCAAGGGACCTCCCAACTCCTTCCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2753611 54 -   2996164 ATGGTCACTAGCCTATCATAAACCCCTTTCAAGGGACCTCCCAACTCCTTCCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     507045 54 +    766320 ATGGTCACTAGCCTATCATAAACCCCTTTCAAGGAACCTCCCAACTCCTtcccc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28963070 54 -  71996105 ATGGTCACTAGCCTATCATAAACCCCTTTCAAGGGACCTCCCAACTCCTTCCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     138806 54 +    290775 ATGGTCACTAGCCTATCATAAACCCCTTTCAAGGAACCTCCCAACTCCTTCCCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2593310 54 -   3067355 ATGGTCACTAGCCTATCATAAACCCTTTTCAAGGGACCTCCCAACTCCTTCCCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30035395 53 + 171630274 ATGGTCACTAGATTATCATAAACCCCTTTCA-GGGACCTCCCAACCCCTGCCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           183332 54 -    242197 ATGGCCACTAGAATATCACAAACCCCTTTCAGGGGACCTCCCAATCCCTGCCCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     177159 54 -   1771730 ATGGTCACTAGACTATCATAAACCCCTTTCAGGGGACCTCCCAATCCCTGCCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     251809 53 -    457564 ATGGTCACTAGACTATCATAAACCCCTTTCA-GGGACCTCCCAACCCCTGcccc
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57826979 42 -  94987271 ATGATTGCCAGACCTTCAGCAAGCAC-TTCAGGTGACC-----AGTCC------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26201096 46 +  26524999 --------TGCATCATCACAATCTCCTGTGCGTGGACCCCCCAACCCATGCCCT
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            13743 44 +  18854210 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=2202505.000000
s hg38.chr6_GL000254v2_alt   851077 236 +   4827813 AGCTCCTAACACAAT----GCTGGCACT-TTGGGGCTCAAGAAATGAATAAATGCGTAGACCAATGCATGAATATTTCagaaggaaaaggagtaggagaaa-aa--------------taatgagagtgg------aaaagACAGAGAACAAAGAGGGAAAGGGAAAC------------AGTC---------------------ACTAAGAAAGGTGTAATCTAAAGAGATTCAGCGATATAGCAGAGAAAGGAAAGGA---ATGAAATGCCAAGATAATGACAAAGTTAGAAATGT-
s panTro5.chr6             29813755 240 + 175400573 AGCTCCTAACACAAT----GCTGGCACT-TTGGGGCTCAAGAAAGGAATAAATGCGTAGACCAATGCATGAATATTTCagaaggaaaaggagtaggagaaa-aa--------------taatgagagtgg------aaaagACAGAGAACAAAGAGGGAAAGGGAAACA--------AAGAGTC---------------------ACTAAGAAAGGTGTAATCTAAAGAGATTCAGCGATATAGCAGAGAAAGGAAAGGA---ATGAAATGCCAAGATAATGACAAAGTTAGAAATGT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30048377 240 + 173848474 AGCTCCTAACACAAT----GCTGGCACT-TTGGGGCTCAAGAAAGGAATAAATGCGTAGACCAATGCATGAATATTTCagaaggaaaaggagtaggagaaa-aa--------------taatgagagtgg------aaaagACAGAGAACAAAGAGGGAAAGGGAAACA--------AAGAGTC---------------------ACTAAGAAAGGTGTAATCTAAAGAGATTCAGCGATATAGCAGAGAAAGGAAAGGA---ATGAAATGCCAAGATAATGACAAAGTTAGAAATGT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5854879 239 +   6154872 AGCTCCTAACACAAT----GCTGGCACT-TTGGGGCTCAAGAGAGGAATAAATGCGTAGACCAATGCATGAATATTTCagaaggaaaaggagtaggag-aa-aa--------------taatgagagtgg------aaaagACAGAGAACAAAGAGGGAAAGGGAAACA--------AAGAGTC---------------------ACTAAGAAAGGTGTAATCTAAAGAGATTCAGCGATATAGCAGAGAAAGGAAAGGA---ATGAAATGCCAAGATAATGACAAAGTTAGAAATGT-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30045052 240 + 172585720 AGCTCCTAACACAAT----GCTGGCACT-TTGGAGTTTGATAAATGAATAAATGCACAGACCAATGCATGAATATATCagaaggaaaaggagtaggagaaa-aa--------------taatgagagtag------aaAAGACAGAGATCAAAGAGGGAAAGGGAAACA--------AAGAGTC---------------------ACTAAGAAAGGTGTAATCTAAAGAGATTCAGCAATATAGCAGAGAAAGGAAAGGA---GTAAAATGCCAAGATAATGACAAAGTTAGAAATGT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29707494 240 - 170955103 AGCTCCTAACACAAT----GCTGGCACT-TTGGAGTTTGATAAATGAATAAATGCACAGACCAATGCATGAATATATCAGAAGGAAAAGGAGTAGGAGAAA-AA--------------TAATGAGAGTGG------AAAAGACAGAGATCAAAGAGGGAAAGGGAAACA--------AAGAGTC---------------------ACTAAGAAAGGTGTAATCTAAAGAGATTCAGCAATATAGCAGAGAAAGGAAAGGA---GTAAAATGCCAAGATAATGACAAAGTTAGAAATGT-
i macFas5.chr4             C 0 I 129
s macNem1.NW_012011356v1    2753665 240 -   2996164 AGCTCCTAACACAAT----GCTGGCACT-TTGGAGTTTGATAAATGAATAAATGCACAGACCAATGCATGAATATATCAGAAGGAAAAGGAGTAGGAGAAA-AA--------------TAATGAGAGTGG------AAAAGACAGAGATCAAAGAGGGAAAGGGAAACA--------AAGAGTC---------------------ACTAAGAAAGGTGTAATCTAAAGAGATTCAGCAATATAGCAGAGAAAGGAAAGGA---GTAAAATGCCAAGATAATGACAAAGTTAGAAATGT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     507099 240 +    766320 agctcctaacacaat----gctggcact-ttggagtttgataaatgaataaatGCACAGATCAATGCATGAATATATCagaaggaaaaggagtaggagaaa-aa--------------taatgagagtgg------aaaaggcagaGATCAAAGAGGGAAAGGGAAACA--------AAGAGTC---------------------ACTAAGAAAGGTGTAATCTAAAGAGATTTAGCAATATAGCAGAGAAAGGAAAGGA---GTAAAATGCCAAGATAATGACAAAGTTAGAAATGT-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28963124 240 -  71996105 AGCTCCTAACACAAT----GCTGGCACT-TTGGGGTTTAATAAATGAATAAATGCACAGACCAATGCATGAATATATCAGAAGGAAAAGGAGTAGGAGAAA-AA--------------TAATGAGAGTGG------AAAAGACAGAGATCAAAGAGGGAAAGGGAAACA--------AAGAGTC---------------------ACTAAGAAAGGTGTAATCTAAAAAGATTCAGCAATATAGCAGAGAAAGGAAAGGA---GTAAAATGCCAAGATAATGACAAAGTTAGAAATGT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     138860 240 +    290775 AGCTCCTAACACAAT----GCTGGCACT-TTGGAGTTTGATAAATGAATAAATGCACAGATCAATGCATGAATATATCagaaggaaaaggagtaggagaaa-aa--------------taatgagagtgg------aaaaggcagaGATCAAAGAGGGAAAGGGAAACA--------AAGAGTC---------------------ACTAAGAAAGGTGTAATCTAAAGAGATTTAGCAATATAGCAGAGAAAGGAAAGGA---GTAAAATGCCAAGATAATGACAAAGTTAGAAATGT-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2593364 240 -   3067355 AGCTCCTAACACAAT----GCTGGCACT-TTGGGGTTTAAGAAATGAATAAATGCACAGACCAATGCATGAATATATCAGAAGGAAAAAGAGTAGGAGAAA-AA--------------TAATGAGAGTGG------AAAAGACAGAGATCAAAGAGGGAAAGGGAAACA--------AAGAGTC---------------------ACTAAGGAAGGTGTAATCTAAAGAGATTCAGCAATATAGCAGAGAAAGGAAAGGA---GTAAAACGCCAAGATAATGACAAAGTTAGAAACAT-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30035448 238 + 171630274 AGCTCCTAGCACAAT----CCTGGCACT-TTGGGGCTCAAGAAATGAATAAATGCATAAACCAACGAATGAATATGTCAGAAGGAAAAGAACTAGGAGAAA-AA--------------TAATGAGGGTGG------AAAAGACAGAGATCAAAGTGGGAAAGGGAAAC----------AGAGTC---------------------AGTAAGAAAGGTGTAATCTAAAGAGATTCAGCAGTACAGCAGAGAAAGAAAGGGA---GTGAAATGCCAAGAGAATGACAAAGTTAGAAATGC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           183386 240 -    242197 AGCTCGTAGCACAAT----GCTGGCACT-TTGGGGCTCAAGAAATGAATAAATGCATAAACCAATGAATGAATATGTCAGAAGGAAAAGAACTAGGAGAAA-AA--------------TAATGAGGGGGG------AAAAGACAGAGATTGAAGTGGGAAAGGGAAACA--------AAGAGTC---------------------ACTAAGAAAGATATAATCTAAAGAGATTCAGCAGTATAGCAGAGAAAGAGAGGGA---GTGAAATGCCAAGAGAATGACAAAGTTAGAAATGC-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     177213 240 -   1771730 AGCTCCTAGCACAAT----GCTGGTACT-TTGGGGCTCAAGAAATGAACAAATGCATAAACCAATGAATGAATATGTCAGAAGGAAAAGAACTAGGAGAAA-AA--------------TAATGAGGGTGG------AAAAGACAGAGGTCGACGTGGGAAAGGGAAACA--------AAGAGTC---------------------ACTAAGAAAGGTGTAATCTAAAGAGATTCAGCAGTATAGCAGAGAAAGGAAGGGA---GTGAAATGCCAAGAGAATGACAAAGTTAGAAATGA-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     251862 238 -    457564 agctcctagcacaat----gctggcact-ttggggctcaagaaatgaataaatgcatAAACCAATGAATGAATATGTCAGAAGGAAAAGAACTAGGAGAAA-AA--------------TAATGAGGGTGG------AAAAGACAGAGATCAAAGTGGGAAAGGGAAAC----------AGAGTC---------------------ACTAAGCAAGGTGTAATCTAAAGAGATTCAGCAGTACAGCAGAGAAAGAAAGGGA---GTGAAATGCCAAGAGAATGACAAAGTTAGAAATGC-
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            13787 264 +  18854210 AGCAGCTAGCACATG----ACTGACTCT-TTGGGGACCAATAAA-AAATAAACG--------AATGCATATATGTGTGGAATTAATGGAAAGTAGGAAAAG-TAGTGCTGCCTATTGTTGGTGACAGAGG------AAAGAACTG-GAATAAATAGGATAAGGAAAGCATGTGTTATTAAAGTCTGGCAACAACAGAGAACAGAGTCTAAGGAAGATACCAACTGAA-AGATTCAGAA-------AAAACATTCGGTGAA---GTAAGTTGCCAAGAGAGTAAGACTGTGAAGAATG--
i otoGar3.GL873550         I 44 C 0
s mm10.chr17               57827021 213 -  94987271 ------------------------CATC-TTGTAGTACCAGAAGCAGAAAAATTCACAGACAAATAAATGCATGATTTAGAATGATGCAAACTAGGAAAAACAA--------------TGGTAAGCATAATTCATCAAAAGACAGA------------AAAAGGTGGCC-------------CC---------------------ACTAAAGAAGATAAACTCTAAAGAGATCCAGAAATCAGATAGAGAAAAGAAGAGCCATGGGAAGAGCCAAGTTAGAGACAGGGTCAGTAAGGA-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26201142 209 +  26524999 GGCTCCCAGCACACTGCTGGCTGGCACTCCTGGGGCCCAAGAAAGGAGTAAATGCAGAAACCCCTGAATG----------------ACAGGGTCAGGGTAA-AT--------------TAAAGAAAGCAG------AGAAGACAGAGACAAGGGAGAACAGGTG-------------AGGGGTC---------------------TGGAAGGGGAG-ACCACTTACAGAGGCTCAG--------------GAAGGAGGGA---GGGGAGAGTCAGGAGAATGTGAAACTCAG-AATGCA
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=145974.000000
s hg38.chr6_GL000254v2_alt   851313 17 +   4827813 AGAAAATTAATTAGGAT
s panTro5.chr6             29813995 17 + 175400573 AGAAAATTAATTAGGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30048617 17 + 173848474 AGAAAATTAATTAGGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855118 17 +   6154872 AGAAAATTAATTAGGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30045292 17 + 172585720 AGAAAATTAATTAGGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29707863 17 - 170955103 AGAAAATTAATTAGGAT
i macFas5.chr4             I 129 C 0
s macNem1.NW_012011356v1    2753905 17 -   2996164 AGAAAATTAATTAGGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     507339 17 +    766320 AGAAAATTAATTAGGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28963364 17 -  71996105 AGAAAATTAATTAGGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     139100 17 +    290775 AGAAAATTAATTAGGAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2593604 17 -   3067355 AGAAAATTAATTAGGAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30035686 17 + 171630274 AGAAAATCAGTTGGGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           183626 17 -    242197 AGAAAATCAATTGGGAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     177453 17 -   1771730 GGAAAATCGATTGGGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     252100 17 -    457564 AGAAAATCAGTTGGGAT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            14051  1 +  18854210 -------C---------
i otoGar3.GL873550         C 0 I 50347
s mm10.chr17               57827234 15 -  94987271 CAATAATCAAATGGA--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26201351 17 +  26524999 AACAAATTGATTAGGAT
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=12000.000000
s hg38.chr6_GL000254v2_alt   851330 1 +   4827813 G
s panTro5.chr6             29814012 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30048634 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855135 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30045309 1 + 172585720 G
i rheMac8.chr4             C 0 I 1304
s macFas5.chr4             29707880 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2753922 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     507356 1 +    766320 G
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28963381 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     139117 1 +    290775 G
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2593621 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30035703 1 + 171630274 G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           183643 1 -    242197 G
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     177470 1 -   1771730 G
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     252117 1 -    457564 G
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26201368 1 +  26524999 G
i canFam3.chr35            C 0 C 0
e mm10.chr17               57827249 0 -  94987271 C
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            14052 50347 +  18854210 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=718484.000000
s hg38.chr6_GL000254v2_alt   851331 96 +   4827813 ACACATGATGGATGAATAA--GAAACAATTGGCTATTGTTTAAGGTTACATGCAAAGAATTTTATATTACAAAG----AAAACAAAGGAgg-gggcggcagcc
s panTro5.chr6             29814013 96 + 175400573 ACACATGATGGATGAATAA--GAAACAATTGGCTACTGTTTAAGGTTACATGCAAAGAATTTTATATTACAAAG----AAAACAAAGGAgg-gggcggcagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30048635 96 + 173848474 ACACATGATGGATGAATAA--GAAACAATTGGCTATTGTTTAAGGTTACATGCAAAGAATTTTATATTACAAAG----AAAACAAAGGAgg-gggcggcagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855136 96 +   6154872 ACACATGATGGATGAATAA--GAAACAATTGGCTATTGTTTAAGGTTACATGCAAAGAATTTTATATTACAAAG----AAAACAAAGGAgg-gggcggcagcc
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29707881 97 - 170955103 ACACATAATGGATGAATAA--GAAACAGTTGGCtattgtttaaggttacatgcaaagaattttatattacaaag----gaaacaaagaaggagggtggcagct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2753923 97 -   2996164 ACACATGATGGATGAATAA--GAAACAGTTGGCtattgtttaaggttacatgcaaagaattttatattacaaag----gaaacaaaggaggggggcggcagct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     507357 97 +    766320 ACACATGATGGATGAATAA--GAAACAGTTGGCtattgtttaaggttacatgcaaagaattttatattacaaag----gaaacaaaggaggggggcggcagct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28963382 97 -  71996105 ACACATGATGGATGAATAA--GAAACAGTTGGCtattgtttaagattacatgcaaagaattttatattacaaag----aaaacaaaggaggggggcggtagct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     139118 97 +    290775 ACACATGATGGATGAATAA--GAAACAGTTGGCtattgtttaaggttacatgcaaagaattttatattacaaag----gaaacaaaggaggggggcggcagct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2593622 97 -   3067355 ACACATGATGGATGAATAA--GAAACAGTTGGCTCttgtttaaggttacatgcaaagaattttatattacaaag----aaaacaaaggaggggggcggcagct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30035704 95 + 171630274 CTATGTGATGGATGAATAG---AAACAGTTAGCtattgtttaagtgtacatgcaaataattttatattacaaag----aaaacaaagcagg-aggtggcaact
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           183644 96 -    242197 CTATGTGATGGTTGAATAA--TTAACAGTTGGCtattgtttaagggtacatgcaaataattttatagtacaaag----aaaacaaaggagg-cagtggcagct
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     177471 96 -   1771730 CTATGTGATGGATGAATAA--TTAAAAGTTGGCtattgtttaagggtacatgcaaataattttatattacaaag----aaaacaaaggagg-aggtggcagct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     252118 96 -    457564 CTATGTGATGGATGAATAA--GAAACAGTTAGCtattgttcaagggtacatgcaaataattttatattacaaag----aaaacaaagcagg-aggtgacaact
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            64399 94 +  18854210 ACAGTTCATGGATGAGTAA--CACATAGTGGGCAATTACTGAG------ATACAAAAGATACAATGCTGTAAAGTTTAAAAACATATGAAG-AGGCTAAGGAC
i otoGar3.GL873550         I 50347 T 50348
s mm10.chr17               57827249 66 -  94987271 ------GATGGGTG----------------------TCGCTAAGGACACATACTAAAATTTGTAAAT---AAGG----AAAGCAAATGAGG--ATTGGCTGCT
i mm10.chr17               C 0 I 3
s canFam3.chr35            26201369 87 +  26524999 ----ATAGTTGAGGAGTAACACAAACAGCTGGCTTCAGTTTA-GGTCAC-----AAGAACTGGATATCACAagg----gaagtaaaggaga-ggacc-ctgct
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e rheMac8.chr4             30045310 1304 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=792310.000000
s hg38.chr6_GL000254v2_alt   851427 102 +   4827813 aatgagcatgaggtttcttttgggagtaatg-aaatattctggaa-----------gtaaatggt------------gttggttgcac-----aacttgtgaatatac---------------------------------tttaaaccactaaatt--------acacact
s panTro5.chr6             29814109 102 + 175400573 aatgagcatgaggtttcttttgggagtaatg-aaatattctggaa-----------gtaaatggt------------gttggttgcac-----aacttgtgaatatac---------------------------------tttaaaccactaaatt--------acacact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30048731 102 + 173848474 aatgagcatgaggtttcttttgggagtaatg-aaatattctggaa-----------gtaaatggt------------gttggttgcac-----aacttgtgaatatac---------------------------------tttaaaccactaaatt--------acacact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855232 102 +   6154872 aatgagcatgaggtttcttttcggagtaatg-aaatattctggaa-----------gtaaatggt------------gttggttgcac-----aacttgtgaatatac---------------------------------tttaaaccactaaatt--------acacact
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29707978 102 - 170955103 aatgagcatgaggtttcttttgggggtgatg-aaatgttctggaa-----------gtaaatgat------------gttggttgcac-----aacttgtgaatatac---------------------------------tttaaaccactaaatt--------acacact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2754020 102 -   2996164 aatgagcatgaggtttcttttgggggtgatg-aaatgtcctggaa-----------gtaaatgat------------gttggttgcac-----aacttgtgaatatac---------------------------------tttaaaccactaaatt--------acacact
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     507454 102 +    766320 aatgagcatgaggtttcttttgggggtgatg-aaatgttctggaa-----------gtaaatgat------------gttggttgcac-----aacttgtgaatatac---------------------------------tttaaaccactaaatt--------atacact
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28963479 102 -  71996105 aatgagcatgacgtttcttttgggggtgatg-aaatgttctggaa-----------gtaaatgat------------gttggttgcac-----aacttgtgaatatac---------------------------------tttaaaccactaaatt--------acacact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     139215 102 +    290775 aatgagcatgaggtttcttttgggggtgatg-aaatgttctggaa-----------gtaaatgat------------gttggttgcac-----aacttgtgaatatac---------------------------------tttaaaccactaaatt--------atacact
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2593719 102 -   3067355 aatgagcatgaggtttcttttgggggtgatg-aaatgttctggaa-----------gtaaatgat------------gttggttgcac-----aacttgtgaatatac---------------------------------tttaaaccactaaatt--------acacact
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30035799 101 + 171630274 aatgagcctgaggtttcttctggg-gtgatg-aaatgttccgtaa-----------gtaaatggt------------gttttttgcac-----aacttgtgaatatac---------------------------------tttaaaccgctaaatt--------acacact
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           183740  97 -    242197 aatgagcctgagg----ttatggg-gtgatg-aaatgttctgtaa-----------gtaaatggt------------gttggttgcac-----aacttgtgaatatac---------------------------------tttaaaccactaaatt--------acacact
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     177567 101 -   1771730 aatgagcctgaggtttcttttggg-gtgacg-aaatgttctgtaa-----------gtaaatggt------------gttggttgcac-----aacttgtgaatatac---------------------------------tttaaaccactaaatt--------acacact
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     252214 101 -    457564 aatgagcctgaggtttcttctagg-gtgatg-aaatgttctgtaa-----------gtaaatggt------------gttggttgcac-----aacttgtgaatatac---------------------------------tttaaaccactaaatt--------acacact
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            14145 117 +  18854210 AATgtggctgaatcct---------gtaataccagcactctgggaggccaaggcgtgtagatagcttgagctcacaagttgggaggtc-----aaggcgtgtagatag---------------------------------cttgagctctcaagtt--------ggagacc
i otoGar3.GL873550         T 50348 I 50356
s mm10.chr17               57827318  96 -  94987271 -ACAGGATTAAG-------TTGGG-ATAATG------------AG-----------GTAGTTGGT------------TCTGGTCTGGCCATTTGACTGGTAAGGGCACT--------------------------------TTTAAAACAATGAATTCATATgggagacagc
i mm10.chr17               I 3 C 0
s canFam3.chr35            26201456 134 +  26524999 ccttggcgtgatgttttgttttagggcaatg-agatgttctggag-----------gctgatggt------------gttggttgcac-----gg-tagtgactatactaaaaagcactaaaaaataataataataaaaaataaaaaGCACTAAATT--------ATACATT
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e rheMac8.chr4             30045310 1304 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=269169.000000
s hg38.chr6_GL000254v2_alt   851529 37 +   4827813 -tcaaaagggcgaattttatggtacgttaaatacatct
s panTro5.chr6             29814211 37 + 175400573 -tcaaaagggcaaattttatggtatgttaaatacatct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30048833 37 + 173848474 -tcaaaagggcaaattttatggtatgttaaatacatct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855334 37 +   6154872 -tcaaaagggtgaattttatggtatgttaaatacatct
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29708080 37 - 170955103 -tcaaaagggcaaattttatggtatgtgaaatacacct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2754122 37 -   2996164 -tcaaaagggcaaattttatggtatgtgaaatatacct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     507556 37 +    766320 -tcaaaagggcaaattttatggtatgtgaaatacacct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28963581 37 -  71996105 -tcaaaagggcgaattttatggtatgtgaaatacatct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     139317 37 +    290775 -tcaaaagggcaaattttatggtatgtgaaatacacct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2593821 37 -   3067355 -tcaaaagggcgaattttatagtatgtgaaatacatct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30035900 37 + 171630274 -tcaaaagggtgaattttatggtatgtgaaatacatct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           183837 37 -    242197 -tcgaaagggtgaattttgtggtatgtgaagtacatct
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     177668 37 -   1771730 -tcgaaagggtgaattttatggtatgtgaagtacatct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     252315 37 -    457564 -tcaaatgggtgaattttatggtatgtgaaatacatct
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57827414 32 -  94987271 -tcagttgg-----taatgtgctgtgtgggctgcatgc
i mm10.chr17               C 0 I 3
s canFam3.chr35            26201590 25 +  26524999 TTCAAAGGGTC-----------TATGTAAACTCTCT--
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            14262 50356 +  18854210 I
e rheMac8.chr4             30045310 1304 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=190743.000000
s hg38.chr6_GL000254v2_alt   851566 27 +   4827813 caaaaaaTGaaagcgaaggcata----atta
s panTro5.chr6             29814248 27 + 175400573 caaaaaaTGaaagcgaaggcata----atta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30048870 27 + 173848474 caaaaaaTGaaagcgaaggcata----atta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855371 27 +   6154872 caaaaaaTGaaagcgaaggcata----atta
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29708117 27 - 170955103 taaaaaatgaaagtgaaggcata----atta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2754159 27 -   2996164 taaaaaatgaaagtgaaggcata----atta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     507593 27 +    766320 caaaaaatgaaagtgaaggcata----atta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28963618 27 -  71996105 caaaaaatgaaagcgaaggcata----atta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     139354 27 +    290775 caaaaaatgaaagtgaaggcata----atta
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2593858 27 -   3067355 caaaaaatgatagcgaaggcata----atta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30035937 18 + 171630274 gaaaaaatga---------aata----atta
i calJac3.chr4             C 0 I 4
s saiBol1.JH378357           183874 27 -    242197 caaaaaatgaaagcaaaggaata----atta
i saiBol1.JH378357         C 0 I 4
s cebCap1.NW_016107755v1     177705 27 -   1771730 caaaaaatgaaagcaaaggaata----atta
i cebCap1.NW_016107755v1   C 0 I 201
s aotNan1.NW_018509740v1     252352 27 -    457564 gaaaaaatgaaagcaaaggaata----atta
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            64618 27 +  18854210 aaaaaaataaaaacgagatccca----tctc
i otoGar3.GL873550         I 50356 I 5
s mm10.chr17               57827449 26 -  94987271 tgaaaaccagagctgagagccca----aca-
i mm10.chr17               I 3 I 1
s canFam3.chr35            26201615 31 +  26524999 CTCCAAAGGAAAACAAAGGAATAGTCTATTA
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e rheMac8.chr4             30045310 1304 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=7847.000000
s hg38.chr6_GL000254v2_alt   851593 1 +   4827813 a
s panTro5.chr6             29814275 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30048897 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855398 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29708144 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2754186 1 -   2996164 a
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     507620 1 +    766320 a
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28963645 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     139381 1 +    290775 a
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2593885 1 -   3067355 a
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30035959 1 + 171630274 a
i calJac3.chr4             I 4 C 0
s saiBol1.JH378357           183905 1 -    242197 a
i saiBol1.JH378357         I 4 C 0
s aotNan1.NW_018509740v1     252379 1 -    457564 a
i aotNan1.NW_018509740v1   C 0 I 200
s otoGar3.GL873550            64650 1 +  18854210 a
i otoGar3.GL873550         I 5 C 0
s canFam3.chr35            26201646 1 +  26524999 G
i canFam3.chr35            C 0 C 0
e mm10.chr17               57827475 1 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e cebCap1.NW_016107755v1     177732 201 -   1771730 I
e rheMac8.chr4             30045310 1304 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=47824.000000
s hg38.chr6_GL000254v2_alt   851594 9 +   4827813 aaatttaga
s panTro5.chr6             29814276 9 + 175400573 aaatttaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30048898 9 + 173848474 aaatttaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855399 9 +   6154872 aaatttaga
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29708145 9 - 170955103 aattttaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2754187 9 -   2996164 aattttaga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     507621 9 +    766320 aattttaga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28963646 9 -  71996105 aactttaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     139382 9 +    290775 aattttaga
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2593886 9 -   3067355 aattttaga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30035960 9 + 171630274 aaatttaga
i calJac3.chr4             C 0 I 3
s saiBol1.JH378357           183906 9 -    242197 aaacttaga
i saiBol1.JH378357         C 0 I 1284
s otoGar3.GL873550            64651 9 +  18854210 aaatagaaa
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57827476 9 -  94987271 gcatgtaaa
i mm10.chr17               I 1 I 1
s canFam3.chr35            26201647 8 +  26524999 AAATTCAG-
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e aotNan1.NW_018509740v1     252380 200 -    457564 I
e cebCap1.NW_016107755v1     177732 201 -   1771730 I
e rheMac8.chr4             30045310 1304 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=72933.000000
s hg38.chr6_GL000254v2_alt   851603 18 +   4827813 ggcc--aggcacagtgactc
s panTro5.chr6             29814285 18 + 175400573 ggcc--gggcacggtgactc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30048907 18 + 173848474 ggcc--gggcacggtgactc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855408 18 +   6154872 ggcc--aggcacggtgactc
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29708154 18 - 170955103 ggcc--aggcacggtggctc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2754196 18 -   2996164 ggcc--aggcacggtggctc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     507630 18 +    766320 ggcc--aggcacggtggctc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28963655 18 -  71996105 ggcc--aggcacggtggctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     139391 18 +    290775 ggcc--aggcacggtggctc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2593895 18 -   3067355 ggcc--aggcatggtggctc
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550            64660 18 +  18854210 -acctgaggca-agaggatc
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57827486 17 -  94987271 agcc--aagaacaatg-ttc
i mm10.chr17               I 1 C 0
s canFam3.chr35            26201655 11 +  26524999 ---------CATGGTGATTC
i canFam3.chr35            C 0 I 306
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           183915 1284 -    242197 I
e aotNan1.NW_018509740v1     252380 200 -    457564 I
e cebCap1.NW_016107755v1     177732 201 -   1771730 I
e calJac3.chr4             30035969  3 + 171630274 I
e rheMac8.chr4             30045310 1304 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=131451.000000
s hg38.chr6_GL000254v2_alt   851621 33 +   4827813 atgcctgtaatcccagcactttgggaggccgag
s panTro5.chr6             29814303 33 + 175400573 atgcctgtaatcccagcactttgggaggctgag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30048925 33 + 173848474 atgcctgtaatcccagcactttgggaggccgag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855426 33 +   6154872 atgcctgtaatcccagcactttgggaggccgag
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29708172 33 - 170955103 atgtctgtaatcccagcactttgggcagctgat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2754214 33 -   2996164 atgtctgtaatcccagcattttgggcagctgat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     507648 33 +    766320 atgtctgtaatcccagcactttgggcagctgag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28963673 33 -  71996105 atgcctgtaatcccagcacttcgggcggctgag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     139409 33 +    290775 atgtctgtaatcccagcactttgggcagctgag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2593913 33 -   3067355 atgcctgtaatcccagcactttggggggctgag
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550            64678 30 +  18854210 a---ctggaacccaagaatttgaggatgctgtg
i otoGar3.GL873550         C 0 I 189
s mm10.chr17               57827503 31 -  94987271 atacatattaagccagca--tgagaaggcagag
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e canFam3.chr35            26201666 306 +  26524999 I
e saiBol1.JH378357           183915 1284 -    242197 I
e aotNan1.NW_018509740v1     252380 200 -    457564 I
e cebCap1.NW_016107755v1     177732 201 -   1771730 I
e calJac3.chr4             30035969  3 + 171630274 I
e rheMac8.chr4             30045310 1304 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=192542.000000
s hg38.chr6_GL000254v2_alt   851654 46 +   4827813 gcaggcagatcacctgaggtcaggagtctgagaccagcctggccaa
s panTro5.chr6             29814336 46 + 175400573 gcaggcagatcacctgaggtcaggagtctgagaccagcctggccaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30048958 46 + 173848474 gcaggcagatcacctgaggtcaggagtctgagaccagcctggccaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855459 46 +   6154872 gcaggcagatcacctgaggtcagtagtctgagaccagcctggccaa
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29708205 46 - 170955103 gcggacagatcacctgaggtcaggagtctgagaccagcctgaccaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2754247 46 -   2996164 gcggacagatcacctgaggtcaggagtctgagaccagcctgaccaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     507681 46 +    766320 gcggacagatcacctgaggtcaggagtctgagaccagcctgaccaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28963706 46 -  71996105 gcgggcagatcacctgaggtcaggagtctgagaccagcctggccaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     139442 46 +    290775 gcggacagatcacctgaggtcaggagtctgagaccagcctgaccaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2593946 46 -   3067355 gcgggcagatcacctgaggtcaggagtctgagaccagcctggccaa
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57827534 43 -  94987271 acagaaggaacctttgggcttaatggc---aagcaaatctagccaa
i mm10.chr17               C 0 I 696
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e canFam3.chr35            26201666 306 +  26524999 I
e saiBol1.JH378357           183915 1284 -    242197 I
e otoGar3.GL873550            64708 189 +  18854210 I
e aotNan1.NW_018509740v1     252380 200 -    457564 I
e cebCap1.NW_016107755v1     177732 201 -   1771730 I
e calJac3.chr4             30035969  3 + 171630274 I
e rheMac8.chr4             30045310 1304 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=98787.000000
s hg38.chr6_GL000254v2_alt   851700 27 +   4827813 catggcgaaaccccgtctctactaaaa
s panTro5.chr6             29814382 26 + 175400573 -atggcgaaaccccatctctactaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30049004 26 + 173848474 -atggcgaaaccccatctctactaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855505 27 +   6154872 catggcgaaaccccgtctctactaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29708251 27 - 170955103 cacggcaaaaacccatctctactaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2754293 27 -   2996164 cacggcaaaaacccatctctactaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     507727 27 +    766320 cacggcaaaaccccatctctactaaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28963752 27 -  71996105 catggcaaaaccccatctctactaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     139488 27 +    290775 cacggcaaaaccccatctctactaaaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2593992 27 -   3067355 cacagcaaaaccccttctctactaaaa
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57827577 696 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e canFam3.chr35            26201666 306 +  26524999 I
e saiBol1.JH378357           183915 1284 -    242197 I
e otoGar3.GL873550            64708 189 +  18854210 I
e aotNan1.NW_018509740v1     252380 200 -    457564 I
e cebCap1.NW_016107755v1     177732 201 -   1771730 I
e calJac3.chr4             30035969  3 + 171630274 I
e rheMac8.chr4             30045310 1304 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=641092.000000
s hg38.chr6_GL000254v2_alt   851727 152 +   4827813 atacaaaaattagctaggcatggtcttgagtgcctgtaatccccgctacttgggaggctgaggcaggagaatagcttgagcccaggaggtggaagttgcagtgagcagagatcgtgccattgcactccagcctgggctataaaacgtgactc
s panTro5.chr6             29814408 152 + 175400573 atacaaaaattagctaggcatcgtcttgagtgcctgtaatccctgctacttgggaggctgaggcaggagaatagcttgagcccaggaggtggaggttgcagtgagcagagatcgtgccattgcactccagcctgggctataaaacgtgactc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30049030 152 + 173848474 atacaaaaattagctaggcatcgtcttgagtgcctgtaatccctgctacttgggaggctgaggcaggagaatagcttgagcccaggaggtggaggatgcagtgagcagagattgtgccattgcactccagcctgggctataaaacgtgactc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855532 152 +   6154872 atacaaaaattagccaggcatggtcttgagtgcctgtaatccccgctacttgggaggctgaggcaggagaatagcttgagcccaggaggtggaggttgcagtgagcagagatcgtgccattgcactccagcctgggctataaaacatgactg
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29708278 152 - 170955103 atacaaaaattagctgagcatggtcatgagtgcctgtaatccctgctacttgcaaggctgaggcaggagaatagcttgagccctggaggtggaggttgcagtgagcagagatcacaccattgcactccagcctgggctacagaatgtgactc
i macFas5.chr4             C 0 I 4
s macNem1.NW_012011356v1    2754320 152 -   2996164 atacaaaaattagctgagcatggtcatgagtgcctgtaatccctgctacttgcaaggctgaggcaggagaatagcttgagccctggaggtggaggttgcagtgagcagagatcacaccattgcactccagcctgggctacagaatgtgactc
i macNem1.NW_012011356v1   C 0 I 4
s cerAty1.NW_012002711v1     507754 152 +    766320 atacaaaaattagctgagcatggtcatgagtgcctgtaatccctgctacttgcaaggctgaggcaggagaatagcttgagccctggaggtggaggttgcagtgagcagagatcacaccattgcactccagcctgggctacagaatgtgactc
i cerAty1.NW_012002711v1   C 0 I 486
s chlSab2.chr17            28963779 152 -  71996105 atacaaaaattagctgagcatggtcatgagcgcctgtaatccctgctacttgcgaggctgaggcaggagaatagcttgagccctggaggtggaggttgcagtgagcagagatcacaccattgcactccagcctgggctacagaatgtgactc
i chlSab2.chr17            C 0 I 4
s manLeu1.NW_012099233v1     139515 152 +    290775 atacaaaaattagctgagcatggtcatgagtgcctgtaatccctgctacttgcaaggctgaggcaggagaatagcttgagccctggaggtggaggttgcagtgagcagagatcacaccattgcactccagcctgggctacagaatgtgactt
i manLeu1.NW_012099233v1   C 0 I 4
s colAng1.NW_012115566v1    2594019 152 -   3067355 atacaaaaattagctgaacatggtcatgagcgcctataatccctgctacttgcgaggctgaggcaggagaatagcttgagccctggaggtggaggttgcagttagcagagatcacaccattgcactccagcctgggctacagaatgtgactc
i colAng1.NW_012115566v1   C 0 I 4
s otoGar3.GL873550            64897 140 +  18854210 aaacaaaaaataacaaggctttatggtgggtg---------ccagctacttgggaggctgaggcaatagaatcacttaagcccaaaagttctaggttgctgtaagctgtga---caccatggcactctacccagggtgacagcttgagactc
i otoGar3.GL873550         I 189 C 0
e mm10.chr17               57827577 696 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e canFam3.chr35            26201666 306 +  26524999 I
e saiBol1.JH378357           183915 1284 -    242197 I
e aotNan1.NW_018509740v1     252380 200 -    457564 I
e cebCap1.NW_016107755v1     177732 201 -   1771730 I
e calJac3.chr4             30035969   3 + 171630274 I
e rheMac8.chr4             30045310 1304 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=19080.000000
s hg38.chr6_GL000254v2_alt   851879 34 +   4827813 taaaaaaa---aaaaaaaaaaaaaaa-------------------------------------------aattagaatgg
s panTro5.chr6             29814560 31 + 175400573 t---gtct---aaaaaaaaaaaaaaa-------------------------------------------aattagaatgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30049182 30 + 173848474 t---gtct----aaaaaaaaaaaaaa-------------------------------------------aattagaatgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855684 34 +   6154872 t---gtcttaaaaaaaaaaaaaaaaa-------------------------------------------aattagaatgg
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29708434 19 - 170955103 ---------t---------aaaaaaa-------------------------------------------aaccagaatag
i macFas5.chr4             I 4 C 0
s macNem1.NW_012011356v1    2754476 20 -   2996164 ---------t--------aaaaaaaa-------------------------------------------aatcagactag
i macNem1.NW_012011356v1   I 4 C 0
s chlSab2.chr17            28963935 28 -  71996105 ---------taaaacaaaacaaaaca-------------------------------------------aaacagaatgg
i chlSab2.chr17            I 4 C 0
s manLeu1.NW_012099233v1     139671 24 +    290775 ---------t----taaaaaaaaaaa-------------------------------------------aaacagaatag
i manLeu1.NW_012099233v1   I 4 C 0
s colAng1.NW_012115566v1    2594175 28 -   3067355 ---------taaaaaaaaaaaaaaca-------------------------------------------aaacagaatgg
i colAng1.NW_012115566v1   I 4 C 0
s otoGar3.GL873550            65037 77 +  18854210 ---tgtctcaaaaaaaaaaaaaaaaagaaTTAAAAATAATCAGAATAAAATAAATAAataaataaaaataatcagaatag
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57827577 696 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e canFam3.chr35            26201666 306 +  26524999 I
e saiBol1.JH378357           183915 1284 -    242197 I
e aotNan1.NW_018509740v1     252380 200 -    457564 I
e cebCap1.NW_016107755v1     177732 201 -   1771730 I
e calJac3.chr4             30035969  3 + 171630274 I
e cerAty1.NW_012002711v1     507906 486 +    766320 I
e rheMac8.chr4             30045310 1304 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=260889.000000
s hg38.chr6_GL000254v2_alt   851913 81 +   4827813 tggtgacatcttga-ggggtgacaaattgagaaaattgaga---gatcaggga-ggggcacacagaa-gcttctaagatacttgaaa
s panTro5.chr6             29814591 81 + 175400573 tggtgacatcttga-ggggtgacaaattgagaaaattgaga---gagcaggga-ggggcacacagaa-gcttctaagatacttgaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30049212 81 + 173848474 tggtgacatcttga-ggggtgacaaattgagaaaattgaga---gagcaggga-ggggcacacagaa-gcttctaagatacttgaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855718 81 +   6154872 tggtgacatcttga-ggggtgacaaattgagaaaattgaga---gagcaggga-ggggcacacagaa-gcttctaagatacttgaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29708453 72 - 170955103 tggtgacgtcttga-ggggtgagg---------aattgaga---gagcaggga-ggggcacacagga-gcttctaaaatacttgaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2754496 69 -   2996164 tggtgacgtcttga-ggggtgagg----------attga-a---gagcaggga--gggcacacagga-gcttctaaaatacttgaaa
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28963963 71 -  71996105 tggtgacgtcttga-gaggtgagg----------attgaga---gagcaggga-ggggcacacagga-gcttctaagatactggaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     139695 72 +    290775 tggtgacgtcttga-ggggtgagg---------aattgaga---gagcagaga-ggggcacacagga-gcttctaaaatacttgaaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2594203 73 -   3067355 tggtgacgtcttgagggggtgagg---------aattgaga---gagcaggga-ggggcacacagga-gcttctaagatacttgaaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30035972 72 + 171630274 tggtggtatcttga-ggggtgaga---------aagtgaga---gatcaggga-ggggcacacagga-gcttctaagatacttgaaa
i calJac3.chr4             I 3 C 0
s otoGar3.GL873550            65114 70 +  18854210 -ggtcacttcttga-agg---------------aaataaaatatgattagagagggggtacataaaaggcttcaaagatattggtag
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57827577 696 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e canFam3.chr35            26201666 306 +  26524999 I
e saiBol1.JH378357           183915 1284 -    242197 I
e aotNan1.NW_018509740v1     252380 200 -    457564 I
e cebCap1.NW_016107755v1     177732 201 -   1771730 I
e cerAty1.NW_012002711v1     507906 486 +    766320 I
e rheMac8.chr4             30045310 1304 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=73841.000000
s hg38.chr6_GL000254v2_alt   851994 16 +   4827813 catttgctcagttcct
s panTro5.chr6             29814672 16 + 175400573 catttgctcagttcct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30049293 16 + 173848474 catttgctcagttcct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855799 16 +   6154872 catttgctcagttcct
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29708525 16 - 170955103 catttgctcagttcct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2754565 16 -   2996164 catttgctcagttcct
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28964034 16 -  71996105 catttgctcagttcct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     139767 16 +    290775 catttgctcagttcct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2594276 16 -   3067355 catttgctcagttcct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30036044 16 + 171630274 cgtttgctcagtttct
i calJac3.chr4             C 0 C 0
s otoGar3.GL873550            65184 16 +  18854210 caactgttctgtttct
i otoGar3.GL873550         C 0 I 997
s canFam3.chr35            26201972 10 +  26524999 CATCTACTCA------
i canFam3.chr35            I 306 C 0
e mm10.chr17               57827577 696 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           183915 1284 -    242197 I
e aotNan1.NW_018509740v1     252380 200 -    457564 I
e cebCap1.NW_016107755v1     177732 201 -   1771730 I
e cerAty1.NW_012002711v1     507906 486 +    766320 I
e rheMac8.chr4             30045310 1304 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=12285.000000
s hg38.chr6_GL000254v2_alt   852010 3 +   4827813 taa
s panTro5.chr6             29814688 3 + 175400573 taa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30049309 3 + 173848474 taa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855815 3 +   6154872 taa
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29708541 3 - 170955103 taa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2754581 3 -   2996164 taa
i macNem1.NW_012011356v1   C 0 I 375
s chlSab2.chr17            28964050 3 -  71996105 taa
i chlSab2.chr17            C 0 I 384
s manLeu1.NW_012099233v1     139783 3 +    290775 taa
i manLeu1.NW_012099233v1   C 0 I 388
s colAng1.NW_012115566v1    2594292 3 -   3067355 taa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30036060 3 + 171630274 taa
i calJac3.chr4             C 0 I 54
e mm10.chr17               57827577 696 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e canFam3.chr35            26201982 0 +  26524999 C
e saiBol1.JH378357           183915 1284 -    242197 I
e otoGar3.GL873550            65200 997 +  18854210 I
e aotNan1.NW_018509740v1     252380 200 -    457564 I
e cebCap1.NW_016107755v1     177732 201 -   1771730 I
e cerAty1.NW_012002711v1     507906 486 +    766320 I
e rheMac8.chr4             30045310 1304 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=2805.000000
s hg38.chr6_GL000254v2_alt   852013 3 +   4827813 cct
s panTro5.chr6             29814691 3 + 175400573 cct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30049312 3 + 173848474 cct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855818 3 +   6154872 cct
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29708544 3 - 170955103 tct
i macFas5.chr4             C 0 C 0
s colAng1.NW_012115566v1    2594295 3 -   3067355 cct
i colAng1.NW_012115566v1   C 0 I 7420
s calJac3.chr4             30036117 3 + 171630274 cct
i calJac3.chr4             I 54 C 0
s canFam3.chr35            26201982 1 +  26524999 -C-
i canFam3.chr35            C 0 C 0
e mm10.chr17               57827577 696 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           183915 1284 -    242197 I
e otoGar3.GL873550            65200 997 +  18854210 I
e aotNan1.NW_018509740v1     252380 200 -    457564 I
e cebCap1.NW_016107755v1     177732 201 -   1771730 I
e manLeu1.NW_012099233v1     139786 388 +    290775 I
e chlSab2.chr17            28964053 384 -  71996105 I
e cerAty1.NW_012002711v1     507906 486 +    766320 I
e macNem1.NW_012011356v1    2754584 375 -   2996164 I
e rheMac8.chr4             30045310 1304 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=2214.000000
s hg38.chr6_GL000254v2_alt   852016 3 +   4827813 agt
s panTro5.chr6             29814694 3 + 175400573 agt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30049315 3 + 173848474 agt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855821 3 +   6154872 agt
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29708547 2 - 170955103 -gc
i macFas5.chr4             C 0 I 912
s calJac3.chr4             30036120 3 + 171630274 act
i calJac3.chr4             C 0 I 8
s canFam3.chr35            26201983 3 +  26524999 ACT
i canFam3.chr35            C 0 C 0
e mm10.chr17               57827577 696 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           183915 1284 -    242197 I
e otoGar3.GL873550            65200 997 +  18854210 I
e aotNan1.NW_018509740v1     252380 200 -    457564 I
e cebCap1.NW_016107755v1     177732 201 -   1771730 I
e colAng1.NW_012115566v1    2594298 7420 -   3067355 I
e manLeu1.NW_012099233v1     139786 388 +    290775 I
e chlSab2.chr17            28964053 384 -  71996105 I
e cerAty1.NW_012002711v1     507906 486 +    766320 I
e macNem1.NW_012011356v1    2754584 375 -   2996164 I
e rheMac8.chr4             30045310 1304 + 172585720 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=6006.000000
s hg38.chr6_GL000254v2_alt   852019 1 +   4827813 t
s panTro5.chr6             29814697 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30049318 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855824 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30046614 1 + 172585720 t
i rheMac8.chr4             I 1304 C 0
s macFas5.chr4             29709461 1 - 170955103 T
i macFas5.chr4             I 912 C 0
s macNem1.NW_012011356v1    2754959 1 -   2996164 t
i macNem1.NW_012011356v1   I 375 C 0
s cerAty1.NW_012002711v1     508392 1 +    766320 t
i cerAty1.NW_012002711v1   I 486 C 0
s manLeu1.NW_012099233v1     140174 1 +    290775 t
i manLeu1.NW_012099233v1   I 388 C 0
s colAng1.NW_012115566v1    2601718 1 -   3067355 T
i colAng1.NW_012115566v1   I 7420 C 0
s calJac3.chr4             30036131 1 + 171630274 t
i calJac3.chr4             I 8 C 0
s canFam3.chr35            26201986 1 +  26524999 T
i canFam3.chr35            C 0 C 0
e mm10.chr17               57827577 696 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           183915 1284 -    242197 I
e otoGar3.GL873550            65200 997 +  18854210 I
e aotNan1.NW_018509740v1     252380 200 -    457564 I
e cebCap1.NW_016107755v1     177732 201 -   1771730 I
e chlSab2.chr17            28964053 384 -  71996105 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=140054.000000
s hg38.chr6_GL000254v2_alt   852020 28 +   4827813 gTTTAAATATGTAACAATATTTTGAAAA
s panTro5.chr6             29814698 27 + 175400573 gTTTAAATACGTAACAATA-TTTGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30049319 27 + 173848474 gTTTAAATACGTAACAATA-TTTGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855825 28 +   6154872 gTTTAAATATGTAACAATATTTTGAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30046615 28 + 172585720 gtttaaatatgtaacaatattttaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29709462 28 - 170955103 GTTTAAATATGTAACAATATTTTAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2754960 28 -   2996164 gtttaaatatgtaacaatgttttaaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     508393 28 +    766320 gtttaaatatgtaacaatattttaaaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28964437 28 -  71996105 gtttaaatatgtaacaatattttaaaaa
i chlSab2.chr17            I 384 C 0
s manLeu1.NW_012099233v1     140175 28 +    290775 gtttaaatatgtaacaatattttaaaaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2601719 28 -   3067355 GTTTAAATATATAACAATATTTTAAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30036132 23 + 171630274 gtttaaatatttaaaaacatttt-----
i calJac3.chr4             C 0 C 0
s canFam3.chr35            26201987 28 +  26524999 TTGTAAATGTATACAAATATGACAAATA
i canFam3.chr35            C 0 C 0
e mm10.chr17               57827577 696 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           183915 1284 -    242197 I
e otoGar3.GL873550            65200 997 +  18854210 I
e aotNan1.NW_018509740v1     252380 200 -    457564 I
e cebCap1.NW_016107755v1     177732 201 -   1771730 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=133740.000000
s hg38.chr6_GL000254v2_alt   852048 20 +   4827813 TTAAAAATATATTTTAAGTG
s panTro5.chr6             29814725 20 + 175400573 TTAAAAATATATTTTAAGCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30049346 20 + 173848474 TTAAAAATATATTTTAAGCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855853 20 +   6154872 TTAAAAATATATTTTAAGCG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30046643 20 + 172585720 ttaaaaataTATTTTAAGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29709490 20 - 170955103 TTAAAAATATATTTTAAGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2754988 20 -   2996164 ttaaAAATATTTTTTAAGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     508421 20 +    766320 ttaaaaataTATTTTAAGCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28964465 19 -  71996105 ttaaaaaT-TTTTTTAAGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     140203 20 +    290775 ttaaaaataTATTTTAAGCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2601747 20 -   3067355 TTAAAAATATATTTTAAGCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30036155 18 + 171630274 --aaaaataTATTTTAAAGG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     177933 20 -   1771730 ttaaaaataTATTTTAAGGG
i cebCap1.NW_016107755v1   I 201 C 0
s aotNan1.NW_018509740v1     252580 20 -    457564 ttaaaaataTATTTTAAAGG
i aotNan1.NW_018509740v1   I 200 C 0
s canFam3.chr35            26202015 10 +  26524999 TTTAAAATAT----------
i canFam3.chr35            C 0 C 0
e mm10.chr17               57827577 696 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e saiBol1.JH378357           183915 1284 -    242197 I
e otoGar3.GL873550            65200 997 +  18854210 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=3006524.000000
s hg38.chr6_GL000254v2_alt   852068 350 +   4827813 AGAAAAGAATAATGGGAAAAACAGGAAGAAGACAGAGACAATGGCAGAGAGTCCTGGCAAAAAGGGAGATGTGATAGAGCTT---AATACAAGATGGGGACCC-TGTAAGAGGAAGACATTCCTGCCATCCTCTGAGCT-CCATGGCACGTTTGTGGTGTGGCCCACCATCTCATCTCCTCCCCTCATG----GCCTTCCTAAGGTCCTGTAAGACCCTGAGTCCTTGTCTCTGACCTGCCAG-----AGTGGCTTCAGTCTCCCACCCCCAGCCCTCAACTGACCTTCTATGCCCCAATACATCTC-TATTTTAAGG-AAAAAGTCCAgtcacctcctctaggaagctttccctgatatacccaa
s panTro5.chr6             29814745 350 + 175400573 AGAAAAGAATAATGGgagaaagaggaagaagacagagacaacggcagagaGTCCTGGAAAAAAGGGAGATGTGATAGAGCTT---AATACAAGATGGGGACCC-TGTAAGAGGAAGACACTCCTGCCATCCTCTGAGCT-CCATGGCATGTTTGTGGGGTGGCCCACCGTCTCATCTGCTCCCCTCATG----GCCTTCCTAAGGTCCTGTAAGACCCTGAGTCCTTGTCTCTGACCTGCCAG-----AGTGGCTTCAGTCTCCCACCCCCAGCCCTCAGCTGACCTTCTATGCCCCAATACATCTC-TATTTTAAGG-AAAAAGTCCAgtcacctcctctaggaagctttccctgatatacccaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30049366 350 + 173848474 AGAAAAGAATAATGGGAGAAAGAGGAAGAAGACAGAGACAACGGCAGAGTGTCCTGGAAAAAAGGGAGATGTGATAGAGCTT---AATACAAGATGGGGACCC-TGTAAGAGGAAGACACTCCTGCCATCCTCTGAGCT-CCATGGCATGTTTGTGGGGTGGCCCACCGTCTCATCTGCTCCCCTCATG----GCCTTCCTAAGGTCCTGTAAGACCCTGAGTCCTTGTCTCTGACCTGCCAG-----AGTGGCTTCAGTCTCCCACCCCCAGCCCTCAGCTGACCTTCTATGCCCCAATACATCTC-TATTTTAAGG-AAAAAGTCCAgtcacctcctctaggaagctttccctgatatacccaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5855873 350 +   6154872 AGAAAAGAATAATGGgagaaagaggaagaagacagagacaatggcagagaGTCCTGGCAAAAAGGGAGATGTGATAGAGCTT---AATACAAAATGGGGACCC-TGTAAGAGGAAGACACTCCTGCCATCCTCTGAGCT-CCATGGCATGTTTGTGGGGTGGCCCACCATCTCATCTGCTCCCCTCATG----GCCTTCCTAAGGTCCTGTAAGACCCTGAGTCCTTGTCTCTGACCTGCCAG-----AGTGGCTTCAGTCTCCCACCCCCAGCCCTCAGCTGAccttctatgccccaatacatctc-tattttaagg-aaaaagtccagtcacctcctctaggaagctttccctgatatacccaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30046663 345 + 172585720 AGAAAAGAATAATGGGAGAAAGAGGAAGA----AGAGACAATGGCAGAGAGTCCTGGCAAAAAGGGAGATGTGATAGAACTG---AATACAAGATGGAGACCC-TGTAAGAGGAAGACACTCCTGCCATCCTCTGAGCT-CCATGGCACATTTGT-GGGTGGCCCACCATCTCCTCTGCTCCCCTCATG----GCCTTCCTAAGGTCCTGTAAGACCCTGAGTCCTTGTCTCTGACCTGCCAG-----AGTGGCTTCAGTCTCCCACCTCCAGCTCTCAGCTGACCTTCTATGCCCCAATACATCTC-TATTTTAAGG-AAAAAACCCAgccacctcctctaggaagctttccctgacatatccga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29709510 345 - 170955103 AGAAAAGAATAATGGGAGAAAGAGGAAGA----AGAGACAATGGCAGAGAGTCCTGGCAAAAAGGGAGATGTGATAGAACTT---AATACAAGATGGAGACCC-TGTAAGAGGAAGACACTCCTGCCATCCTCTGAGCT-CCATGGCACATTTGT-GGGTGGCCCACCATCTCCTCTGCTCCCCTCATG----GCCTTCCTAAGGTCCTGTAAGACCCTGAGTCCTTGTCTCTGACCTGCCAG-----AGTGGCTTCAGTCTCCCACCTCCAGCTCTCAGCTGACCTTCTATGCCCCAATACATCTC-TATTTTAAGG-AAAAAACCCAgccacctcctctaggaagctttccctgacatatccga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2755008 345 -   2996164 AGAAAAGAATAATGGGAGAAAGAGGAAGA----AGAGACAATGGCAGTGAGTCCTGGCAAAAAGGGAGATGTGATAGAACTT---AATACAAGGTGGAGACCC-TGTAAGAGGAAGACACTCCTGCCATCCTCTGAGCT-CCACGGCACGTTTGT-GGGTGGCCCACCATCTCCTCTGCTCCCCTCATG----GCCTTCCTAAGGTCCTGTAAGACCCTGAGTCCTTGTCTCTGACCTGCCAG-----AGTGGCTTCAGTCTCCCACCTCCAGCTCTCAGCTGACCTTCTATGCCCCAATACATCTC-TATTTTAAGG-AAAAAACCCAgccacctcctctaggaagctttccctgacatatccga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     508441 318 +    766320 AGAAAAGAATAATGGGAGAAAGAGGAAGA----AGAGAC---------------------------AGATGTGATAGAACTT---AATACAAGATGGAGACCC-TGTAAGAGGAAGACACTCCTGCCATCCTCTGAGCT-CCACGGCACGTTTGT-GGGTGGCCCACCATCTCCTCTGCTCCCCTCATG----GCCTTCCTAAGGTCCTGTAAGACCCTGAGTCCTTGTCTCTGACCTGCCAG-----AGTGGCTTCAGTCTCCCACCTCCAGCTCTCAGCTGACCTTCTATGCCCCAATACATCTC-TATTTTAAGG-AAAAAACCCAgccacctcctctaggaagctttccctgacatatccga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28964484 347 -  71996105 AGAAAAGAATAATGGGAGAAAGAGGAAGA----AGAGACAATGGCAGTGAGTCCTGGCAAAAAGGGAGATGTGATAGAACTTGTAAATACAAGATGGAGACCC-TGTAAGAGGAAGACACTCCTGCCATCCTCTGAGCT-CCATGGCACGTTTGTGGGGTGGCTCACCA--TCCTCTGCTCCCCTCATG----GCCTTCCTAAGGTCCCGTAAGACCCTGAGTCCTTGTCTCTGACCTGTCAG-----AGTGGCTTCAGTCTCCCACCTCCAGCTCTTAGATGACCTTCTATACCCCGATACATCTC-TATTTTAAGG-AAAAAACCCAgccacctcctctaggaagctttccctgaTATAACCGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     140223 345 +    290775 AGAAAAGAATAATGGGAGAAAGAGGAAGA----AGAGACAATGGCAGAGAGTCCTGGCAAAAAGGGAGATGTGATAGAACTT---AATACAAGATGGAGACCC-TGTAAGAGGAAGACACTCCTGCCATCCTCTGAGCT-CCGCGGCACGTTTGT-GGGTGGCCCACCATCTCCTCTGCTCCCCTCATG----GCCTTCCTAAGGTCCTGTAAGACCCTGAGTCCTTGTCTCTGACCTGCCAG-----AGTGGCTTCAGTCTCCCACCTCCAGCTCTCAGCTGACCTTCTATGCCCCAATACATCTC-TATTTTAAGG-AAAAAACCCAgccacctcctctaggaagctttccctgacatatccga
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2601767 346 -   3067355 AGAAAAGAACAATGGGAGAAAGAGGAAGA----AGAGACAATGGCAGAGCGTCCTGGCAAAAAAGGAGACGTGATAGAACTT---AATACAAGATGGAGACCC-TGTAAGAGGAAGACACTCCTGCCATCCTCCGAACT-CCATGGCACGTTTGTGGGGTGGCCCACCATCTCCTCTGCTCCCCTCATG----GCCTTCCTAAGGTCCTGTAAGACCCAGAGTCCTTGTTTCTGACCTGCCAG-----AGTGGCTTCAGTTTCCCACCTCCAGCTCTCAGCTGACCTTCTATGCCCCAATACATCTC-CATTTTAAGG-AAAAAACCCAgccacctcctctaggaagctttccctgatatatccga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30036173 350 + 171630274 GGAAAAGAATAATGGGAGAAAAAGGAGGAAGACAGAGACAATGGCAGAGAGTCCTGGCAGAAAGGGAGATGTGATAGAACTT---AATAGAAGATGGGGACCC-TGTAAGAGGAAGACACTCCTGCCATCCTATGAGCT-CCATGGCACGTTTGCCAGGCAGCCCACTGTCTCATCTGCTCCCATCATG----GCCTTCCTGAGGTCCTGCAAGGCCCTGAGTCCTTGTCTCTGACCTGCCAG-----AGGGGCTCCAATCTCCCACCCTCAGCTCTCAGATGAACTTCTATGCCCCAATACATCTC-TATTTTAAGG-AAAACATCCAGTCACTTGCTCTAGGAAGCTTTCCCTGATATATCCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           185199 339 -    242197 aaaaaagaaTAATGGGAGAAAA---AGAAAGTCAGAGACAATGGCAGAGAGTCCTGGCAAAAAGGGAGATGTGATAGAACTT---A-------ATGGGGACCC-TGTAAAAGGAAGACACTCCTGCCATCCTATGAGCT-CCATGGCACGTTTGCCGGGCAGCCCACCGTCTCATCTGCTCCTGTCACG----GCCTTCCTAAGGTCCTGTAAGGCCCTGCGTCCTTGTCTCTGACCTG-CAG-----AGTGGCTTCAGTCTCCCACCCCCAGCTCTCAGCTGACCTTCTATGCCCCAATACGTCCC-TATTTTAAGG-AAAAAATCCAgtcacctgctctaggaagctttccctgaTATATCCGA
i saiBol1.JH378357         I 1284 C 0
s cebCap1.NW_016107755v1     177953 348 -   1771730 GGAAAATAATAATGGGAGAAAAAGGAGAAAGTCAGAGACAATGGCAGAAAGTCCTGGCAAAAAGGGAGATGTGATAGAACTT---AATAGAAGATGGGGACCC-TGTAAAAGGAAGACACTCCTGCCATTCTATGAGCT-ACATGGCACGTTTGCCGGGCAGCCCACCATCTCATCTGCCCCCGTCATG----GCCTTCCTAAGGTCCCGTAAGGCC--GAGTCCTTGTCTCTGATCTGCCAG-----AGTGGCTTCAGTCTCCCACCCCCAGCTTTCAGCTGACTTTCTATGCCCCAATACGTCTC-TATTTTAAGG-AAAAAATCCTGTCACCTGCTCTAGGAAGATTTCCCTGATACATCCGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     252600 351 -    457564 GGAAAAGAATAATGGGAGAAAAAGGAGGAAGACAGAGACAATGGCAGAAAGTCCTGGCAAAAAGGGAGCTGTGATAGAACTT---AATAGAAGATGAGGATCC-TGTAAGAGGTAGACACTCCTGCCATCCTATGAGCT-CCACGGCACATTTGCCGGGCGGCCCACCGTCTCATCTGCTCCTCTCACA----GCCTTCCTGAGGTCCTGTAAGGCCCTGAGTCCTTGTCTCTGACCTGCCAG-----AGTGGCTTCAGTCTCCCACCCTCAGCTCTCAGTTGACCTTCTATGCCCCGATATGTCTC-TATTTTAAGGAAAAAAATCCAATCACCTGCTCTAGGAAGCTTTCCCTGATATATCCAA
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26202025 295 +  26524999 -GAAAACAAACCAGGGA----------------AGATACAGCAGCAGAAATCTCTAACAGGATGG-AGATGC-------------A--ACAGGATGGGAACACGTGTTA---GGAGATGCTCAGGCTACCCTGCAGGCCACTAGGGTACTTCTGC--------------------CAGCTGCCCCCATGCCAAGCCGTCCTGAGG----------CCGGGGGTCATTGGCTAAGGCCAGAGAATCACCAGTGG-TTCAGCCTCCTGCC-CCATCCATGGCTTGGCCTTTTAGG-CCTAATGCTCCTCTTTTTTTATAG-AAAACATATAgtcacctcctctaggaagctttccc-AATATATCCAC
i canFam3.chr35            C 0 C 0
e mm10.chr17               57827577 696 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            65200 997 +  18854210 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=475895.000000
s hg38.chr6_GL000254v2_alt   852418 51 +   4827813 cc-aaattggtcagtcatc---ctACAGAACCTTTACTCTC--ATTCACCCAGTACA
s panTro5.chr6             29815095 51 + 175400573 cc-aaattggtcagtcatc---ctACAGAACCTTTACTCTC--ATTCACCCAGTACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30049716 51 + 173848474 cc-aaattggtcagtcatc---ctACAGAACCTTTACTCTC--ATTCACCCCGTACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5856223 51 +   6154872 cc-aaattggtcagtcatc---ctacagaacctttactctc--attCACCCAGTACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30047008 51 + 172585720 cc-aaataggtcagtcatc---ctACAGAACCTTTACTCTC--ATTCACCCAGTACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29709855 51 - 170955103 cc-aaataggtcagtcatc---ctACAGAACCTTTACTCTC--ATTCACCCAGTACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2755353 51 -   2996164 cc-aaataggtcagtcatc---ctACAGAACCTTTACTCTC--ATTCACCCAGTACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     508759 51 +    766320 cc-aaataggtcagtcatc---ctacagaacctttactctc--attcacccagtaca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28964831 51 -  71996105 CC-AAAGAGGTCAGTCATC---CTACAGAACCTTTACTCTC--ATTCACCCAGTACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     140568 51 +    290775 cc-aaataggtcagtcatc---ctACAGAACCTTTACTCTC--ATTCACCCAGTACA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2602113 51 -   3067355 cc-aaataggtcagtcatc---ctACAGAACCTTTACTCTC--ATTCACCCAGTACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30036523 51 + 171630274 TC-AAATTGGTCAGTCATC---CTACAGACCCTTTATTCTC--ATTCACCCAGAATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           185538 54 -    242197 CCAAAATTGGTCAGTCATC---CTACAGACACTTTACTCTCTTATTCACCCACAATG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     178301 53 -   1771730 CC-AAATTTGTCAGTCATC---CTACAGACCCTTTACTTTCTCATTCACCCAGAATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     252951 51 -    457564 TC-AAATTGGTCAGTCATC---CTACAGACCCTTTACTCTC--ATTCACCCAGAATG
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57828273 51 -  94987271 CC-AAATATGCCCTTCATC---TTATGAATTCTTTACTTTC--ATTCACCCCATACA
i mm10.chr17               I 696 I 19
s canFam3.chr35            26202320 50 +  26524999 CC-AAACTGGCCCTTCAGCTTATTATAGACCCTATCCCCTC------ACTGAGTATG
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            65200 997 +  18854210 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=623262.000000
s hg38.chr6_GL000254v2_alt   852469 76 +   4827813 TTGGTGTTACTGGCCTTTAAATTTTGGACTCTC-TTTTTGGTGGTGTCTGAAAGACTACAAGATTTAGGGAGAGTGA
s panTro5.chr6             29815146 76 + 175400573 TTGGTGTTACTGGCCTTTAAATTTTGGACTCTC-TTTTTGGTGGTGTCTGAAAGACTACAGGATTTAGGGAGAGTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30049767 76 + 173848474 TTGGTGTTACTGGCCTTTAAATTTTGGACTCTC-TTTTTGGTGGTGTCTGAAAGACTACAGGATTTAGGGAGAGTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5856274 76 +   6154872 TTGGTGTTACTGGCCTTTAAATTTTGGACTCTC-TTTTTGGTGGTGTCTGAAAGACTACAGGATTTAGGGAGAGTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30047059 76 + 172585720 TTGCTGTTACTGGCCTTTAAAATTTGGATTCTT-TTTTTGGTGGTGTCTGAAAGACTACAGGATTTAAGGAGAGTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29709906 76 - 170955103 TTGCTGTTACTGGCCTTTAAAATTTGGATTCTT-TTTTTGGTGGTGTCTGAAAGACTACAGGATTTAAGGAGAGTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2755404 76 -   2996164 TTGCTGTTACTGGCCTTTAAAATTTGGATTCTT-TTTTTGGTGGTGTCTGAAAGACTACAGGATTTAAGGAGAGTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     508810 75 +    766320 ttgctgttactggcctttaaaatttggattC-C-TTTTTGGTGGTGTCTGAAAGACTACAGGATTTAAGGAGAGTGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28964882 76 -  71996105 TTGGTGTTACTGGCCTTTAAATTTTGGACTCTT-TTTTTGGTGGTGTCTGAAAGACCACAGGATTTAGGGAGAGTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     140619 75 +    290775 TTGCTGTTACTGGCCTTTAAAATTTGGATTC-C-TTTTTGGTGGTGTCTGAAAGACTACAGGATTTAAGGAGAGTGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2602164 76 -   3067355 TTGCTGTTACTGGTCTTTAAAATTTGGACTCTT-TTTTTGGTGGTGTCTGAAAGACCACAGGATTTAGGGAGAGTGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30036574 77 + 171630274 TTGGTGTTACCAGCCTTTAAATTTTGAATTCTTGTTTTTGGTGGTGTCTGAAAGACTATAGGACTTAGGGACAGTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           185592 77 -    242197 TTGGTGTTACTGGTCTTTAAATTTTGAATTCTTGTTTTTGGTGGTGTCTGAAAGACTATAGGATTTAAGGAGAGTGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     178354 77 -   1771730 TTGGTGTTACTGGCCTTTAAATTTTGCATTCTTGTTTTTGGTGGTGTCTGAAAGACTATAGGATTTAAGGAGAGTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     253002 77 -    457564 TTGGTGTTACTGGCCTTTAAATTCTGAATTCTTGTTTTTGGTGGTGTCTGAAAGACTATAGGACTTAGGGAGAGTGA
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26202370 25 +  26524999 TTGGTATTCCTGACCTTGGAGGCTC----------------------------------------------------
i canFam3.chr35            C 0 C 0
e mm10.chr17               57828324 19 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            65200 997 +  18854210 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=1398583.000000
s hg38.chr6_GL000254v2_alt   852545 157 +   4827813 T----------------TCTTGGAGTCTTTC-GATAATGTTCCTGTGAA-C-CCTGGTGATTTTAACATGCTTGTGGCCACTCTTGCCTCCTACTTGTAAGCTACTCATGGCAAGGACGAAGCATGTGGACCAATTTCCACCCCTCCCTG--AAAGTCAGTTGGTTCAGAAACTTAGG-----------------------------------------------------------------
s panTro5.chr6             29815222 158 + 175400573 T----------------TCTTGGAGTCTTTCTGATAATGTTCCTGTGAA-C-CCTGGTGATTTTAACATGCTTGTGGCCACTCTTGCCTCCTACTTGTAAGCTACTCATGGCAAGGACGAAGCATGTGGACCAATTTCCACCCCTCCCTG--CAAGTCAGTTGGTTCAGAAACTTAGG-----------------------------------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30049843 158 + 173848474 T----------------TCTTGGAGTCTTTCTGATAATGTTCCTGTGAA-C-CCTGGTGATTTTAACATGCTTGTGGCCACTCTTGCCTCCTACTTGTAAGCTACTCATGGCAAGGACGAAGCATGTGGACCAATTTCCACCCCTCCCTG--CAAGTCAGTTGGTTCAGAAACTTAGG-----------------------------------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5856350 157 +   6154872 T----------------TCTTGGAGTCTTTC-GATAATGTTCCTGTGAA-C-CCTGGTGATTTTAACATGCTTGTGGTCACTCTTGCCTCCTACTTGAAAGCTACTCATGGCAAGGACGAAGCATGTGGACCAATTTCCACCCCTCCCTG--CAAGTCAGTTGGTTCAGAAACTTAGG-----------------------------------------------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30047135 158 + 172585720 C----------------TCTTGGAGTCTTTC-GATAATGTTCCTGTGAA-CTCCTGGTGATTTTAACATGCTTGTGGTCACTCTCGCCTCCTACTTGTAAGCTACTCATGGCAAGGACGAAGCACGTGGACCAATTTCCACCCCTCCCTT--CAGGTCAGTTGGTTCAGCAACTTAGG-----------------------------------------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29709982 158 - 170955103 C----------------TCTTGGAGTCTTTC-GATAATGTTCCTGTGAA-CTCCTGGTGATTTTAACATGCTTGTGGTCACTCTCGCCTCCTACTTGTAAGCTACTCATGGCAAGGACGAAGCACGTGGACCAATTTCCACCCCTCCCTT--CAGGTCAGTTGGTTCAGCAACTTAGG-----------------------------------------------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2755480 158 -   2996164 C----------------TCTTGGAGTCTTTC-GATAATGTTCCTGTGAA-CTCCTGGTGATTTTAACATGCTTGTGGTCACTCTCGCCTCCTACTTGTAAGCTACTCATGGCAAGGACGAAGCACGTGGACCAATTTCCACCCCTCCCTT--CAGGTCAGTTGGTTCAGCAACTTAGG-----------------------------------------------------------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     508885 158 +    766320 C----------------TCTTGGAGTCTTTC-GATAATGTTCCTGTGAA-CTCCTGGTGATTTTAACATGCTTGTGGTCACTCTCGCCTCCTACTTGTAAGCTACTCATGGCAAGGACGAAGCACGTGGACCAATTTCCACCCCTCCCTT--CAGGTCAGTTGGTTCAGCAACTTAGG-----------------------------------------------------------------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28964958 158 -  71996105 C----------------TCTTGGAGTCTTTC-GATAATGTTCCTGTGAA-CTCCTGGTGATTTTAACATGCTTGTGGCCACTCTCGTCTCCTACTTGTAAGCTACTCATGGCAAGGATGAAGCATGTGGACCAATTTCCACTCCTCCCTT--CCGGTCAGTTGGTTCAGCAACTTAGG-----------------------------------------------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     140694 158 +    290775 C----------------TCTTGGAGTCTTTC-GATAATGTTCCTGTGAA-CTCCTGGTGATTTTAACATGCTTGTGGTCACTCTCGCCTCCTACTTGTAAGCTACTCATGGCAAGGACGAAGCACGTGGACCAATTTCCACCCCTCCCTT--CAGGTCAGTTGGTTCAGCAACTTAGG-----------------------------------------------------------------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2602240 148 -   3067355 C----------------TCTTGGAGTCTTTC-CATAATGTTCCTGTGAA-CTCCTGGTGATTTTAACATGCTTGTGGCCACTCTCGCCTCCTACTTGTAAGCTACTCATGGCAAGGACAAAGCATGTGGACCAATTTCCACCCCTCCCTT--CAGGTCAGTTGGTTCA---------------------------------------------------------------------------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30036651 172 + 171630274 CTCTTGGAGTCAT--TATCTTGGAGTCTTTC-AATAATGTTCCTGTGAA-CTCCTGGTGATTTTAACATGCTTGGGGCCACACTCACCTCCTACCTGTAAGCTACTCATTGCAAAGACAAAGCATGTGGGCCAGTCTCCACCCCTCCCTG--CAGGTCAGTTGGTTTGGCAACTTGGG-----------------------------------------------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           185669 158 -    242197 C----------------TCTTGGAGTCTTTC-AATAATCTTCCTGTGAA-CTCCTGGTGATTTTAACATGCTTGGGGCCACTCTCACCTCCTACCTGTAAGCTACTCATGGCAAAGACAAAGCACGTGGACCAGTCTCCACCCCTCTCTG--CAGGTCAGCTGGTTTGGCAACTTGGG-----------------------------------------------------------------
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     178431 174 -   1771730 CTCTTGGAGTCATTATATTTGGGAGTCTTTC-AATAATGTTCCTATGAA-CCCCCCGTGATTTTAACATGCTTGGGGCCACTCTCACCTCCTACCTGTAAGCTACTCATGGCAAAGGCGAAGCACGTGGACCAGCCTCCACCCCTCCCTG--CAGGTCAGTTGGTTTGGCAACTTGGG-----------------------------------------------------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     253079 172 -    457564 CTCTTGGAGTCAT--TATCTTGGAGTCTTTC-AATAATGTTCCTGTGAA-CTCCTGGTGATTTTAACATGCTTGGGGCCACACTCACCTCCTACCTGTAAGCTACTCATAGCAAAGACGAACCATGTAGACCAGTCTCCACCCCTCCCTG--CAGGTCTGTTGGTTTGGCAACTTGGG-----------------------------------------------------------------
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57828343 140 -  94987271 C----------------TATCTGTGTCTTTT-AATAATGCAACTGTGAG-C-CACAGTGATTTTAACA-------AGCCACTCTAACCTCCTGCCTGTTAACTTCTCATG---AGGACTGAGTAATTGATCCAAT----GCTACTTCCTAACCAGGGCAGCTGTTT-----AGTTAGA-----------------------------------------------------------------
i mm10.chr17               I 19 C 0
s canFam3.chr35            26202395 210 +  26524999 ----------------------GAGGTCTTC-AATAATGTTCCTGTGAAGCCCTCAATGATTTTAATGGGCTTGGGGCCATGCTTGCCTCCTGCCTGTGAGCTTCCCAGGAC-GTGACTGGGCATGTGGACCAGAT-------CCCCTAG--CCAGACAACTGGCTTAGCAACTTGAGCAACCATACTGGTCTGTGAATGGGGTCCTTAGACACAAAGGGAAAACCTTTCTgggcagcgcagg
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e otoGar3.GL873550            65200 997 +  18854210 I
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=168245.000000
s hg38.chr6_GL000254v2_alt   852702 26 +   4827813 TTGCTAAA-----------------AAGGCCAGGGCA------------------ACCAAC-------
s panTro5.chr6             29815380 26 + 175400573 TTGCTAAA-----------------AAGGCCAGGGCA------------------ACCAAC-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30050001 26 + 173848474 TTGCTAAA-----------------AAGGCCAGGGCA------------------ACCAAC-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5856507 26 +   6154872 TTGCTAAA-----------------AAGGCCAGGGCA------------------ACCAAC-------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30047293 26 + 172585720 TTGCTAAA-----------------AAGGCCGGGGCA------------------ACCAAC-------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29710140 26 - 170955103 TTGCTAAA-----------------AAGGCCGGGGCA------------------ACCAAC-------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2755638 26 -   2996164 TTGCTAAA-----------------AAGGCCGGGGCA------------------ACCAAC-------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     509043 26 +    766320 TTGCTAAA-----------------AAGGCCGGGGCA------------------ACCAAC-------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28965116 26 -  71996105 TTGCTAAA-----------------AAGGCCAGGGCA------------------ACCAAC-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     140852 26 +    290775 TTGCTAAA-----------------AAGGCCGGGGCA------------------ACCAAC-------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2602388 24 -   3067355 --GCTAAA-----------------AAGGCCAGGGCA------------------ACCAAC-------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30036823 27 + 171630274 TTGCTAAA----------------GAAAACCAGGCCA------------------ACCCCC-------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           185827 27 -    242197 TTGCTAAA----------------GAAAACCAGACCA------------------ACCCGC-------
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     178605 27 -   1771730 TTGCTAAA----------------GAAAACCAGGCCA------------------ACCCAC-------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     253251 26 -    457564 TTGCTAAA----------------GAAAACCAGGCCA------------------ACCC-C-------
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            66197 26 +  18854210 TTTTTAAA-----------------AGGGAGAAGGTA------------------CAAAAT-------
i otoGar3.GL873550         I 997 I 7
s mm10.chr17               57828483 26 -  94987271 TGATTAAA-----------------GAAGCCAAGACA------------------AGAGAA-------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26202605 68 +  26524999 tggctcagcggtttagtgccgccttcagcccagggcatgatcctggagacctgggatcgagttccacg
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e nomLeu3.chr1a            74558152 7773 + 122973662 I

a score=432908.000000
s hg38.chr6_GL000254v2_alt   852728  70 +   4827813 CTGATCTCTC-----------------------------------------------------------------TATAAGTAGGGATAT----------------------------CTT----AAAACAAAACAAAATCTCTCTCATAG-AT-AAAACACT--GTCTCT--
s panTro5.chr6             29815406  70 + 175400573 CTGATCTCTC-----------------------------------------------------------------TATAAGTAGGGATAT----------------------------CTT----AAAACAAAACAAAATCTCTCTCATAG-AT-AAAACACT--GTCTCT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30050027  70 + 173848474 CTGATCTCTC-----------------------------------------------------------------TATAAGTAGGGATAT----------------------------CTT----AAAACAAAACAAAATCTCTCTCATAG-AT-AAAACACT--GTCTCT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5856533  70 +   6154872 CTGATCTCTC-----------------------------------------------------------------TATAAGTAGGGATAT----------------------------CTT----AAAACAAAACAAAATCTCTCTCATAG-AT-AAAACACT--GTCTCT--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74565925  68 + 122973662 CTGATCTTTC-----------------------------------------------------------------TAGCGGTTGAGTCAT----------------------------TTC----ACATACAGAAGAAATCTC---CACAGTCC-ACATTTCT--ATCACT--
i nomLeu3.chr1a            I 7773 C 0
s rheMac8.chr4             30047319  68 + 172585720 CTGGTCTCTC-----------------------------------------------------------------TGCAAGTGGGGACAT----------------------------CTT----AAAACAAAACAAAATCTCTCT--TAG-AT-AAAACACT--GTCTCT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29710166  68 - 170955103 CTGGTCTCTC-----------------------------------------------------------------TGCAAGTGGGGACAT----------------------------CTT----AAAACAAAACAAAATCTCTCT--TAG-AT-AAAACACT--GTCTCT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2755664  68 -   2996164 CTGGTCTCTC-----------------------------------------------------------------TGCAAGTGGGGACAT----------------------------CTT----AAAACAAAACAAAATCTCTCT--TAG-AT-AAAACACT--GTCTCT--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     509069  68 +    766320 CTGGTCTCTC-----------------------------------------------------------------TGTAAGTGGGGACAT----------------------------CTT----AAAACAAAACAAAATCTCTCT--TAG-AT-AAAACACT--GTCTCT--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28965142  68 -  71996105 CTGGTCTCTC-----------------------------------------------------------------TGTAAGTGGGGACAT----------------------------CTT----AAAACAAAACAAAATCTCTCT--TAG-AT-AAAACACT--GTCTCT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     140878  68 +    290775 CTGGTCTCTC-----------------------------------------------------------------TGTAAGTGGGGACAT----------------------------CTT----AAAACAAAACAAAATCTCTCT--TAG-AT-AAAACACT--GTCTCT--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2602412  69 -   3067355 TTGGTCTCTC-----------------------------------------------------------------CGTAAGTGGGGACAT----------------------------CTT----AAAACAAAACAAAATCTCTCT--TAG-ATAAAAACACT--GTCTCT--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30036850  58 + 171630274 CTGATCTC---------------------------------------------------------------------------AGGATAT----------------------------CTT----AGAACAAAACAAAATCTCTCTCATAG-AT-AAAACA----GTCTCT--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           185854  58 -    242197 CTGATCTC---------------------------------------------------------------------------AGGGTAT----------------------------CTT----AGAACAAAACAAAATCTCTCTCGTAG-AT-AAAACA----GTCTCT--
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     178632  58 -   1771730 CTGATCTC---------------------------------------------------------------------------ACGGTAT----------------------------CTT----AGAACAAAACAAAATCTCTCTCACAG-AT-AAAACA----GTCTCT--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     253277  58 -    457564 CCGATCTC---------------------------------------------------------------------------AGGATAT----------------------------CTT----AGAACAAAACAAAATCTCTCTCATAG-AT-AAAACA----GTCTCT--
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            66230  72 +  18854210 CTGATCTTTC-----------------------------------------------------------------TGTGGGTGGGGTCAT----------------------------TTC----ACACAGAGGAAATATTTTCTTCTTGA-TT-TATGCACTGAGCCTCT--
i otoGar3.GL873550         I 7 C 0
s mm10.chr17               57828509  67 -  94987271 ATAGTCTGTT--------------------------------------------------------------ATGCATGCATGGAGCCAC--------------------------------------ATAAAGGAAAATCTCTCACGTGC-AT-AACACATT--CTTTTT--
i mm10.chr17               C 0 I 64439
s canFam3.chr35            26202673 168 +  26524999 ttgggctccctgcatggtgcctgcttctccctttgcctgtgtctctgcctctgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgatgaataaataaataaaaccttaaaaaaaaTAAAGGAAAACCTCTCC-ATAG-AC-ACAACATT--CTGTCTCA
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T

a score=983463.000000
s hg38.chr6_GL000254v2_alt   852798 108 +   4827813 GATAAG-CTTACTTGCAAATGAAAAAATACAA---------AATAAATGGAATGTACAGAGTTCTATAAAATTCAT-TCAACCAATAGAGCA-ATAATTGAGCCTACAGAGACAACT--------------TAT--
s panTro5.chr6             29815476 108 + 175400573 GATAAG-CTTACTTGCAAATGAAAAAATACAA---------AATAAATGGAATGTACAGAGTTCTATAAAATTCAT-TCAACCAATAGAGCA-ATAATTGAGCCTACAGAGACAACT--------------TAT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30050097 108 + 173848474 GATAAG-CTTACTTGCAAATGAAAAAATACAA---------AATAAATGGAATGTACAGAGTTCTATAAAATTCAT-TCAACCAATAGAGCA-ATAATTGAGCCTACAGAGACAACT--------------TAT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5856603 108 +   6154872 GATAAG-CTTACTTGCAAATGAAAAAATACAA---------AATAAATGGAATGTACAGAGTTCTATAAAATTCAT-TCAACCAATAGAGCA-ATAATTGAGCCTAGAGAGACAACT--------------TAT--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74565993 106 + 122973662 GGTCAA-ATCTCTTGC------AAAAGTGTAA---------AGTAGATAGAATGTGAATGATTTGAGAAAATTTATGCCCACCACTAGAAAACATGATGAATTCTCTAGTAATGTTTA------------CAAT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30047387 108 + 172585720 GATAAG-CTCACTTGCAAATGAAAAAATACAA---------AACAAATGGAATGTACAGAGTTCTATAAAATTCAT-TCAACCAATAGAGCA-ATAATTGAGCCTACAGAGATCACT--------------TAT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29710234 108 - 170955103 GATAAG-CTCACTTGCAAATGAAAAAATACAA---------AACAAATGGAATGTACAGAGTTCTATAAAATTCAT-TCAACCAATAGAGCA-ATAATTGAGCCTACAGAGATCACT--------------TAT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2755732 108 -   2996164 GATAAG-CTCACTTGCAAATGAAAAAATACAA---------AACAAATGGAATGTACAGAGTTCTATAAAATTCAT-TCAACCAATAGAGCA-ATAATTGAGCCTACAGAGATCACT--------------TAT--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     509137 108 +    766320 GATAAG-CTCACTTGCAAATGAAAAAATACAA---------AACAAATGGAATATGCAGAGTTCTATAAAATTCAT-TCAACCAATAGAGCA-ATAATTGAGCCTACAGAGATCACT--------------TAT--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28965210 108 -  71996105 GATAAG-CTCCCTTGCAAATGAAAAAATACAA---------AACAAATGGAATGTACAGAGTTCTATAAAATTCAT-TCAACCAACAGAGCA-ATAATTGAGCCTACAGAGATAACT--------------TAT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     140946 108 +    290775 GAAAAG-CTCACTAGCAAATGAAAAAATACAA---------AACAAATGGAATATACAGAGTTCTATAAAATTCAT-TCAACCAATAGAGCA-ATAATTGAGCCTACAGAGATCACT--------------TAT--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2602481 106 -   3067355 GATAAG-TTCACTTGCAAATGAAAAAATACAA---------AATAAATGGAATGTACAGAGTTCTATAAAAGTCAT-TCAACCAATACAGCA-ATAATTGAGCCT--AGAGACAACT--------------TAT--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30036908 108 + 171630274 GACAAG-CTCACTTGGAAATGAAAAAATACAA---------AATAAATCAAATGTACAGAGTTCTATAAAATTCAT-TCAACCAGCAGAGCA-GTCATTGAGCCTACAGAGACAATT--------------TAT--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           185912 106 -    242197 GATAAG-CTCACCTGGAAATGAAAAAATACAA---------AATAAATCAAACGT--AGAGTTCTATAAAATTCAT-TCAACCAACAGAGCA-GTAATTGAGCCTACAGAGACAATT--------------TAT--
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     178690 108 -   1771730 GATAAG-CTCACCTGGAAATGAAAAAATACAA---------AATAAATCAAATGTACAGAGTTCTATAAAATTCAT-TCAACCAACAGAGCA-GTAATTGAGCCTACAGAGACAATT--------------TAT--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     253335 108 -    457564 GATAAG-CTCACTTGGAAATGAAAAAATACAA---------AATAAATCAAATGTACAGAGTTCTATAAAATTCAC-TCAACCAACAGAGCA-GTAATTGAGCCTACAGAGGCAATT--------------TAT--
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            66302 117 +  18854210 GGTTAGACTCACTCCTACAAACAAGAGTAGCA---------CATAAA--AAACATAGATAATTCTAGGAAATTTAT-GC--CCAG--GACTG-GAAAACAACCCTCCATAGATATCTATGATAGGAAATGCTAT--
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26202841 119 +  26524999 AATCAG-GTCCCTTGCAAAAAAAAAAAAAAAAGGCACAAAGAATACATGTAGTATGAATAGCTCTCCAAAATTCAT-CTGACAAATAGAGAA-ATGATCAACTCTACAGAGATAGCT--------------ACAAC
i canFam3.chr35            C 0 C 0
e mm10.chr17               57828576 64439 -  94987271 I
e proCoq1.NW_012152574v1     569591 1190 +    730504 T

a score=405178.000000
s hg38.chr6_GL000254v2_alt   852906 52 +   4827813 C---AGAA-----------AATTCATT--CAATATACCTTA-----CGAGAT-----CATCCA---ATAGAT-----AAGAGACAA
s panTro5.chr6             29815584 52 + 175400573 C---AGAA-----------AATTCATT--CAATATACCTTA-----CGAGAT-----CATCCA---ATAAAT-----AAGAGACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30050205 52 + 173848474 C---AGAA-----------AATTCATT--CAATATACCTTA-----CGAGAT-----CATCCA---ATAAAT-----AAGAGACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5856711 52 +   6154872 C---AGAA-----------AATTCATT--CAATATACCTTA-----CGAGAT-----CATCCA---ATAAAT-----AAGAGACAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74566099 60 + 122973662 C---AGGA-----------AACTCACT--GAACACACATTT-----CTTTGTATTTCCTTCCACACATAACA-----AAGGGAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30047495 52 + 172585720 C---AGAA-----------AATTCATT--CAATATACATTA-----CGAGAT-----CATCCA---ATAAAT-----AAGAGACAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29710342 52 - 170955103 C---AGAA-----------AATTCATT--CAATATACATTA-----CGAGAT-----CATCCA---ATAAAT-----AAGAGACAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2755840 52 -   2996164 C---AGAA-----------AATTCATT--CAATATACATTA-----CAAGAT-----CATCCA---ATAAAT-----AAGAGACAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     509245 50 +    766320 C---AGAA-----------AATTCATT--CAATATACATTA-----CGAGAT-----CATCCA---ATAAAT-------GAGACAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28965318 52 -  71996105 C---AGAA-----------AATTCATT--CAGTATACATTA-----CGAGAT-----CATCCA---ATAAAT-----AAGAGACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     141054 50 +    290775 C---AGAA-----------AATTCATT--CAATATACATTA-----CGAGAT-----CATCCA---ATAAAT-------GAGACAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2602587 52 -   3067355 C---AGAA-----------AATTCATT--CAATATACATTA-----CGAGAT-----CATCCA---ATAAAT-----AAGAGACAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30037016 59 + 171630274 CATCAGAA-----------AATTTATT--CAATATACATTA-----CCAGAT-----CATCCA---ATAAATAAGC-AAGAGACAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           186018 59 -    242197 CATCAGAA-----------AATTTATT--CAATATACACTA-----TGAGAT-----CATCCA---ATAAATAAGC-AAGAGACAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     178798 59 -   1771730 CATGAGAA-----------TATTTATT--CAATATACATTA-----CGAGAT-----CATCCA---ATAAATAAGC-AAGAGACAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     253443 59 -    457564 CATCAGAA-----------AATTTATT--CAATATACATTA-----CCAGAT-----CATCCA---ATAAATAAGC-AAGAGACAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            66419 55 +  18854210 C---AGAAGAACTTTAGGTAATTCTTT--CTGGATATGCT-----------T-----CATAGA---ATATTC-------AAAACTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57893015 45 -  94987271 C---ACAA-----------GATTCATT---ATTATTCCT-----------AC-----CACACA---GAAGAA-----CAACTTCAA
i mm10.chr17               I 64439 C 0
s canFam3.chr35            26202960 62 +  26524999 C---TAAA-----------AATCCATTATAAAAATACGTTACTTTGCTGGTT-----CTTCCA---ACAAAT--GCATAGGGACAA
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T

a score=544345.000000
s hg38.chr6_GL000254v2_alt   852958 70 +   4827813 CTc------tagaacagcattcagaacatagt-g-gcactcaa----taaatttcccctg----------aatgaa--t--g------aatTAATGAATTAG
s panTro5.chr6             29815636 69 + 175400573 CTC------TA-AAcagcattcagaacatagt-g-gcactcaa----taaatttcccctg----------aatgaa--t--g------aatTAATGAATTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30050257 69 + 173848474 CTC------TA-AAcagcattcagaacatagt-g-gcactcaa----taaatttcccctg----------aatgaa--t--g------aatTAATGAATTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5856763 70 +   6154872 CTc------tagaacagcattcagaacatagt-g-gcactcaa----taaatttcccctg----------aatgaa--t--g------aatTAATGAATTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74566159 78 + 122973662 TTCAGTA-GTAGCATAGCGATCAGAACTTAATAG-GTACTTAA----TAAATTTTTGCAA----------AATTAA--TAGA------AACTAACTAGTTAG
i nomLeu3.chr1a            C 0 I 25
s rheMac8.chr4             30047547 66 + 172585720 CTc------tagaacagcattcagaacatagt-g-gcactcag----taagtttcccttg----------aatgaa--t--g------aatTAATTAA----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29710394 66 - 170955103 CTc------tagaacagcattcagaacatagt-g-gcactcag----taagtttcccttg----------aatgaa--t--g------aatTAATTAA----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2755892 66 -   2996164 CTc------tagaacagcattcagaacatagt-g-gcactcag----taagtttcccttg----------aatgaa--t--g------aatTAATTAA----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     509295 66 +    766320 CTc------tagaacagcattcagaacatagt-g-gcactcag----taagtttcccttg----------aatgaa--t--g------aatTAATTAA----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28965370 66 -  71996105 CTc------tagaacagcattcagaacatagt-g-gcactcag----taagtttcccttg----------aatgaa--t--g------aatTAATTAA----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     141104 66 +    290775 CTc------tagaacagcattcagaacatagt-g-gcactcag----taagtttcccttg----------aatgaa--t--g------aatTAATTAA----
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2602639 66 -   3067355 CTc------tagaacagcattcagaacatagt-g-gcactcaa----taagtttcccttg----------aatgaa--t--g------aatTAATTAA----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30037075 68 + 171630274 CTc------tagaacagcactcagaacataat-g-gcactcgg----taattttctgctg----------aattaa--t--t------aatTAATTAATC--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           186077 68 -    242197 CTc------taaaacagcactcagaacataat-g-gcactcag----taattttctgctg----------aattaa--t--t------aatTAATTAATC--
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     178857 68 -   1771730 CTC------CAGAACAGCACTCAGAATATAAT-G-GCATTTGG----TAATTTTCTGCTG----------AATTAA--T--T------AATTAATTAATC--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     253502 68 -    457564 CTc------tagaacagcactcagaacacaat-g-gcactcag----taattttctgctg----------aattaa--t--t------aatTAATTAATC--
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            66474 65 +  18854210 CTG------CAAAAC-----TCAGAAC--AGT-A-GAGCTCAA----TAATTTATTGTTG----------TGTGAA--T--GAAGAGTAATTAATGAA----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57893060 73 -  94987271 CAG------TAGGCCAGTGTTCAGATCGTAAC-ATATGCTTAG----CAAATGTTTGTTGTGATAATAAAAATTAA--T--G------AGTGAA--------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26203022 71 +  26524999 TACAACACTTGGAACAGCACTCAGAACACAGA-C-GCATCCAC----CATGTGGTC-CTG----------AAGTAA--T--C------AGCTCAGTAC----
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            10535 68 +    102524 CTC------CTGGGCAGTGCTCAGAAC----C-G-GTGCTCAACGTTTGATTGCCCCATT----------ATTGAAATC--C------AACTGATTAA----
i dasNov3.JH582591         N 0 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T

a score=121742.000000
s hg38.chr6_GL000254v2_alt   853028 12 +   4827813 TGCATATTTTAA
s panTro5.chr6             29815705 12 + 175400573 TGCATATTTTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30050326 12 + 173848474 TGCATATTTTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5856833 12 +   6154872 TGCATATTTTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30047613 12 + 172585720 TGCATATTTTAA
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29710460 12 - 170955103 TGCATATTTTAA
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2755958 12 -   2996164 TGCATATTTTAA
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012002711v1     509361 12 +    766320 TGCATATTTTAA
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17            28965436 12 -  71996105 TGCATATTTTAA
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012099233v1     141170 12 +    290775 TGCATATTTTAA
i manLeu1.NW_012099233v1   C 0 I 1227
s colAng1.NW_012115566v1    2602705 11 -   3067355 TGC-TGTTTTAA
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chr4             30037143 10 + 171630274 --CATATTTTAA
i calJac3.chr4             C 0 I 1
s saiBol1.JH378357           186145 10 -    242197 --TGTATTTTAA
i saiBol1.JH378357         C 0 I 1
s cebCap1.NW_016107755v1     178925 10 -   1771730 --CATATTTTAA
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018509740v1     253570 10 -    457564 --CGTATTTTAA
i aotNan1.NW_018509740v1   C 0 I 1
s otoGar3.GL873550            66539 12 +  18854210 TCCATATTTTAT
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57893133 12 -  94987271 TCCATGTTTTTA
i mm10.chr17               C 0 I 1
s canFam3.chr35            26203093 12 +  26524999 TGCATGCTTTCC
i canFam3.chr35            C 0 I 2
s dasNov3.JH582591            10603 12 +    102524 CCCATATTTTGG
i dasNov3.JH582591         C 0 I 1
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e nomLeu3.chr1a            74566237 25 + 122973662 I

a score=23121.000000
s hg38.chr6_GL000254v2_alt   853040 2 +   4827813 TC
s panTro5.chr6             29815717 2 + 175400573 TC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30050338 2 + 173848474 TC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5856845 2 +   6154872 TC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30047626 2 + 172585720 TC
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29710473 2 - 170955103 TC
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2755971 2 -   2996164 TC
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1     509374 2 +    766320 TC
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17            28965449 2 -  71996105 TC
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012099233v1     142409 2 +    290775 TC
i manLeu1.NW_012099233v1   I 1227 C 0
s colAng1.NW_012115566v1    2602717 2 -   3067355 TC
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chr4             30037154 2 + 171630274 TC
i calJac3.chr4             I 1 C 0
s saiBol1.JH378357           186156 2 -    242197 TC
i saiBol1.JH378357         I 1 C 0
s cebCap1.NW_016107755v1     178936 2 -   1771730 TC
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018509740v1     253581 2 -    457564 TC
i aotNan1.NW_018509740v1   I 1 C 0
s otoGar3.GL873550            66552 2 +  18854210 TC
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57893146 2 -  94987271 TC
i mm10.chr17               I 1 C 0
s canFam3.chr35            26203107 1 +  26524999 T-
i canFam3.chr35            I 2 C 0
s dasNov3.JH582591            10616 2 +    102524 TC
i dasNov3.JH582591         I 1 C 0
e proCoq1.NW_012152574v1     569591 1190 +    730504 T
e nomLeu3.chr1a            74566237 25 + 122973662 I

a score=104580.000000
s hg38.chr6_GL000254v2_alt   853042 7 +   4827813 AGCCTCC
s panTro5.chr6             29815719 7 + 175400573 AGCCTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30050340 7 + 173848474 AGCCTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5856847 7 +   6154872 AGCCTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30047628 7 + 172585720 AGCCTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29710475 7 - 170955103 AGCCTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2755973 7 -   2996164 AGCCTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     509376 7 +    766320 AGCCTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28965451 7 -  71996105 AGCCTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     142411 7 +    290775 AGCCTCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2602719 7 -   3067355 AGCCTCC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           186158 7 -    242197 TGCCTCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     178938 7 -   1771730 CGCCTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     253583 7 -    457564 GGCCTCC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                73715 7 + 123392446 AGCCTTC
i micMur3.chr6             N 0 C 0
s proCoq1.NW_012152574v1     568401 7 +    730504 AGCCTCC
i proCoq1.NW_012152574v1   T 1190 C 0
s otoGar3.GL873550            66554 7 +  18854210 CACTTTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57893148 7 -  94987271 AGCCTCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26203108 7 +  26524999 AGCCTCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            10618 7 +    102524 AGCCTCC
i dasNov3.JH582591         C 0 C 0
e calJac3.chr4             30037156 0 + 171630274 C
e nomLeu3.chr1a            74566237 25 + 122973662 I

a score=411377.000000
s hg38.chr6_GL000254v2_alt   853049 27 +   4827813 TTTGCCCTCACCCAGGAAGTCAGAGGC
s panTro5.chr6             29815726 27 + 175400573 TTTGCCCTCACCCAGGAAGTCAGAGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30050347 27 + 173848474 TTTGCCCTCACCCAGGAAGTCAGAGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5856854 27 +   6154872 TTTGCCCTCACCCAGGAAGTCAGAGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74566262 27 + 122973662 TTTGCATTCAACCAGGAAGTCAGAGGC
i nomLeu3.chr1a            I 25 C 0
s rheMac8.chr4             30047635 27 + 172585720 TCTGCCCTCACCCAGGAAGTCAGAGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29710482 27 - 170955103 TCTGCCCTCACCCAGGAAGTCAGAGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2755980 27 -   2996164 TCTGCCCTCACCCAGGAAGTCAGAGGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     509383 27 +    766320 TCTGCCCTCACCCAGGAAGTCAGAGGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28965458 27 -  71996105 TTTGCCCTCACCCAGGAAGTCAGAGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     142418 27 +    290775 TCTGCCCTCACCCAGGAAGTCAGAGGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2602726 27 -   3067355 TCTGCCCTCACCCAGGAAGTCAGAGGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30037156 25 + 171630274 --TGCCCTCCCCCAGGAAGTCAGAGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           186165 27 -    242197 TTTGCCCTCCCCCAGGAAGTCAGAGGC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     178945 27 -   1771730 TTTGCCCTCCCCCAGGAAGTCAGAGGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     253590 27 -    457564 TTTGCCCTCCCTCAGGAAGTCACAGGC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                73722 27 + 123392446 TTTGTCCTCACCCAGAAAGTGAGAGGC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     568408 27 +    730504 TTTGTTCTCAATCAGAAAGTCAGAGGT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            66561 26 +  18854210 TTTGCTCTCAATCAGAAAGTCAGA-GT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57893155 27 -  94987271 TTTTCCCTTACCCAAAGAATCAGAGGC
i mm10.chr17               C 0 I 7687
s canFam3.chr35            26203115 27 +  26524999 GCTGTGCTCAGCCCATCAGCCTGAGGC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            10625 27 +    102524 TCTGTCCTCAAGCAGTGAGTCACTTAC
i dasNov3.JH582591         C 0 C 0

a score=15682433.000000
s hg38.chr6_GL000254v2_alt   853076 943 +   4827813 ACCAGTGTGAGTATCCATCTGCTGTCCAGTACATTCATGGATTCCTCACTCTCACTAGACAATGTTTGACCAGGAAGAACAGGGAATGAGAAG--GAGCTGCTGGAT-----GGTGATGAGCCTTGGAAAGGGAGGCTGGGCGAGCAG-----------AGACAGAAGA-GAAACACCTACCTGCTGTGACCTCACAAACACCCAGGCTGAGTTTTGATAAGACAGGTTGAATCACACTGGGGTGAC--AGC-CTCATCCCTCCAGG---TACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCACACCGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGGGCTGGAAAGGACTCTCTTCGTGGTTGTCTTCACTTCCTAC-------CTCCTAACCCTAGTGGGCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAAGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGTTTCACCACGAGTTGTGTTCCCCAAATGCTGGTCAACCTCTGGGGCCC------AAAGAAGACCATCAGCTTCCTGGACTGCTCTGTCCAGATCTTCATCTTCCTGTCCCTGGGGACAACTGAGTGCATCCTCTTGACAGTGATGGCTTTTGATCGCTACGTGGCTGTCTGCCAGCCCCTCCACTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTAGTGGAGTCAGTGGTCCAGACACCATCCACCCTGCACCTGCCCTTCTGCCCCGATCGGCAGGTGGATGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTCTCCTGTGAAGACACCTCCTACAATGAGATCCAGGTGGCTGTTGCCAGTGTCTTCATCTTGGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTACGGAGCCATTACCTGGGCAGTGCTGAGGATTAA
s panTro5.chr6             29815753 943 + 175400573 ACCAGTGTGAGGCTCAATCCGCTGTCCAGTACATTCATGGATTCCTCACTCTCACTAGACAATGTTTGACCAGGAAGAACAGGGAACGAGAAG--GAGCTGCTGGAT-----GGTGATGAGCCTTGGAAAGGGAGGCTGGGCGAGCAG-----------AGACAGAAGA-GAAACACTCACCTACTGGGACCTCACAAACACCCAGGCTGAGTTTTGATAAGACAGGTTGAATCACACTGGGGTGAC--AGC-CTCATCCCTCCAGG---TACAAACAAGAACAGGCCATGGTTAACCAAAGCTCTGCACCAGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGGGCTGGAAAGGACTCTCTTCGTGGTTGTCTTCACTTCCTAC-------CTCCTAACCCTAGTGGGCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAAGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGTTTCACCACGAGTTGTGTTCCCCAAATGCTGGTCAACCTCTGGGGTCC------AAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGGACCACTGAGTGCATCCTCCTGACAGTGATGGCCTTTGACCGATACGTGGCTGTCTGCCAGCCCCTCCACTATGCCACCATCAT-CCACCCCCGGCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGTCTAGTGGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCCCCATCGGCAGGTGGATGATTTTGTCTGTGAGGTCCCAGCTTTAATTCGACTCTCCTGTGGGGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTACGGAGCCATTACCCGGGCAGTGCTGAGGATTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30050374 943 + 173848474 ACCAGTGTGAGTATCCATCCGCTGTCCAGTACATTCATGGATTCCTCACTCTCACTAGACAATGTTTGACCAGGAAGAACAGGGAACGAGAAG--GAGCTGCTGGAT-----GGTGATGAGCCTTGGAAAGGGAGGCTGGGCGAGCAG-----------AGACAGAAGA-GAAACACTCACCTACTGGGACCTCACAAACACCCAGGCTGAGTTTTGATAAGACAGGTTGAATCACACTGGGGTGAC--AGC-CTCATCCCTCCAGG---TACAAACAAGAACAGTCCATGGTTAACCAAAGCTCTGCACCAGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGGGCTGGAAAGGACTCTCTTCGTGGTTGTCTTCACTTCCTAC-------CTCCTAACCCTAGTGGGCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAAGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGTTTCACCACGAGTTGTGTTCCCCAAATGCTGGTCAACCTCTGGGGTCC------AAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGGACCACTGAGTGCATCCTCCTGACAGTGATGGCCTTTGACCGATACGTGGCTGTCTGCCAGCCCCTCCACTATGCCACCATCAT-CCACCCCCGGCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGTCTAGTGGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCCCCATCGGCAGGTGGATGATTTTGTCTGTGAGGTCCCAGCTTTAATTCGACTCTCCTGTGGGGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTACGGAGCCATTACCCGGGCAGTGCTGAGGATTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5856881 942 +   6154872 ACCAGTGTGAGTATCCATCTGCTGTCCAGTACATTCATGGATTCCTCACTCTCACTAGACAATGTTTGACCAGGAAGAACACGGAACGAGAAG--GAGCTGCTGGAT-----GGTGATGAGCCTTGGAAAGGGAGGCTGGGTGAGCAG-----------AGACAGAAGA-GAAACACCTACCTGCTGTGACCTCACAAACACCCAGGCTGAGTTTTGATAAGACAGGTTGAATCACACTGGGGTGAC--AGC-CTCATCCCTCCAGG---TACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCACACAGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTCGTGGTTGTCTTCACTTCCTAC-------CTCCTAACCCTAGTGGGCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAAGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGTTTCACCACGAGTTGTGTCCCCCAAATGCTGGTCAACCTCTGGGGCCC------AAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGGACCACTGAGTGCATCCTCCTGACAGTGATGGCCTTTGACCGATACGTGGCTGTCTGCCAGCCCCTCCACTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTAGTGGAGTCAGTGGTCCAGACACCATCCACCC-GCGCCTGCCCTTCTGCCCCCATCGGCAAGTGGATGATTTTGTCTGTGAGGTCCCAGCTTTAATTCGACTCTCCTGTGGGGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGTTATGCCTCTCAGCCTCATCCTTGTCTCTTATGGAGCCATTACCCAGGCAGTGCTGAGGATTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74566289 941 + 122973662 ACCAGTGTGAGGCTCAATCCGTTGCTGAGCACATTAATGGTTTCCTCACTCCCACTAGACAATGTTTGATTAGAAGGAACAGGGGATGAAAAG--GAGCTGCTGGAT-----GGTGATGAGACTGGGAAAGGAAGGCTGGGCGAGCAG-----------AGACAGAAGA-GAAACACCCACCTACCGTGACCTCACAAACACCCAGGCTGAGTTTTAATAAGACAGGTTGAATCACACTGGGGTGAC--AGC-CTCATCCTTCCAGA---TACAGACAGGAACAGGCCATGGTTAACCAAAGCGCCACACCAGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGGGCTGGAAAGGACTCTTTTCATGGTTGTCTTCACTTCCTAC-------CTCCTAACCCTAGTGGGCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGTTTCACCATGAGTTGTGTTCCCCAGATGCTGGTCAACCTCTAGGAGCC------AAAGAAGACCATCATTTTACTGGGCTGCTCTGTCCAGTTCTTCATCTTTCTGTCCCTGGGGACCACTGAGTGCAAACTCCTGACAGTGATGGCCTTTGACCACTACATGGCTATCTTCAAGCCCCTCCACCATGCCACCATCAT-CCACCTCTACCTGTGTTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTAGTGGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGTCCTTCTGCCCCCATCGGCAGGTGGATGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTCTCCTATGAAGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGCTGTGC--CTCAGCCTCATCCTTGTCTCTTATGGAGTCATTGCCTGGGCAGTGCTAAGGACTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30047662 943 + 172585720 ACCAGTGTGAGTCTCCATCCACTGTCCAGTACATTCATGGTTTCCTCATTCTCACTAGGCAATGTTTGACCAGAAAGAACAGGGAACGAGAAG--GAGCTGCTGGAT-----GGTGATGAGCCTGGGAAATGGAGGCTGGGTGAGCAG-----------AGACAGAAGA-GAAACACCCACCTGCTGTGACCTCACAAACACCCAGGCTGAGTTTTGATAAGACAAGTTGAATCACACTGGGGCGAC--AGC-CTCATCCTTCCAGG---TACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGGCTCTCTTTGTGGTTGTCTTCACTTCCTAC-------CTCCTAACCCTGGTGGCCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGACTTGTGTCCCCCAGATGCTGGTTAACCTCTGGGGCCC------AAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGGACCACTGAGTGCATCCTCTTGACAGTGATGGCTTTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCATTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCCCCATCGGCAAGTGGATGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTCTCCTGTGGGGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTATGGAGCCATTACCCGGGCAGTGCTGAGGATTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29710509 943 - 170955103 ACCAGTGTGAGTCTCCATCCGCTGTCCAGTACATTCATGGTTTCCTCATTCTCACTAGGCAATGTTTGACCAGAAAGAACAGGGAACGAGAAG--GAGCTGCTGGAT-----GGTGATGAGCCTGGGAAATGGAGGCTGGGTGAGCAG-----------AGACAGAAGA-GAAACACCCACCTGCTGTGACCTCACAAACACCCAGGCTGAGTTTTGATAAGACAAGTTGAATCACACTGGGGCGAC--AGC-CTCATCCTTCCAGG---TACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTTGTGGTTGTCTTCACTTCCTAC-------CTCCTAACCCTGGTGGCCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGACTTGTGTCCCCCAGATGCTGGTTAACCTCTGGGGCCC------AAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGGACCACTGAGTGCATCCTCTTGACAGTGATGGCTTTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCATTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCCCCATCGGCAAGTGGATGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTCTCCTGTGGGGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTATGGAGCCATTACCCGGGCAGTGCTGAGGATTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2756007 943 -   2996164 ACCAGTATGAGTCTCCATCCGCTGTCCAGTACATTCATGGTTTCCTCATTCTCACTAGGCAATGTTTGACCAGAAAGAACAGGGAACGAGAAG--GAGCTGCTGGAT-----GGTGATGAGCCTGGGAAATGGAGACTGGGTGAGCAG-----------AGACAGAAGA-GAAACACCCACCTGCTGTGACCTCACAAACACCCAGGCTGAGTTTTGATAAGACAAGTTGAATCACACTGGGGCGAC--AGC-CTCATCCTTCCAGG---TACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTTGTGGTTGTCTTCACTTCCTAC-------CTCCTAACCCTGGTGGCCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGACTTGTGTCCCCCAGATGCTGGTTAACCTCTGGGGCCC------AAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGGACCACTGAGTGCATCCTGTTGACAGTGATGGCTTTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCATTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCCCCATCGGCAAGTGGATGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTCTCCTGTGGGGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTATGGAGCCATTACCCGGGCAGTGCTGAGGATTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     509410 943 +    766320 ACCAGTGTGAGTCTCCATCCACTGTCCAGTACATTCATGGTTTCCTCATTCTCACTAGGCAATGTTTGACCAGAAAGAACAGGGAACGAGAAG--GAGCTGCTGGAT-----GGTGATGAGCCTGGGAAATGGAGGCTGGGTGAGCAG-----------AGACAGAAGA-GAAACACCCACCTGCTGTGACCTCACAAACACCCAGGCTGAGTTTTGATAAGACAAGTTGAATCACACTGGGGCGAC--AGC-CTCATCCTTCCAGG---TACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTTGTGGTTGTCTTCACTTCCTAC-------CTCCTAACCCTGGTGGGCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATATACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGACTTGTGTCCCCCAGATGCTGGTTAACCTCTGGGGCCC------AAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGGACCACTGAGTGCATCCTCTTGACAGTGATGGCTTTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCATTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCCCCATCGGCAAGTGGATGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTCTCCTGCGGGGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTATGGAGCCATTACCCGGGCAGTGCTGAGGATTAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28965485 943 -  71996105 ACCAGTGTGAGTCTCCATCCACTGTCCAGTACATTCATGGTTTCCTCATTCTCACTAGACAATGTTTGACCAGAAAGAACAGGGAACGAGAAG--GAGCTGCTGGAT-----GGTGATAAGCCTGGGAAATGGAGGCTGGGTGAGCAG-----------AGACAGAAGA-GAAACACCCACCTGCTGTGACCTCACAAACACCCAGGCTGAGTTTTGATAAGACAAGTTGAATCACACTGGGGTGAC--AGC-CTCATCCTTCCAGG---TACAAACAAGAAAAGGTCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTTGTGGTTGTCTTCACTTCCTAC-------CTCCTAACCCTGGTGGGCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGACTTGTGTCCCCCAGATGCTGGTTAACCTCTGGGGCCC------AAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGGACCACTGAGTGTATCCTCTTGACAGTGATGGCTTTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCACTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTTCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCCCCATCGGCAAGTGGATGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTCTCCTGTGGGGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGCGTCTTCATCTTGGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTATGGAGCCATTACCCGGGCAGTGCTGAGGATTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     142445 943 +    290775 ACCAGTGTGAGTCTCCATCCACTGTCCAGTACATTCATGGTTTCCTCATTCTCACTAGGCAATGTTTGACCAGAAAGAACAGGGAACGAGAAG--GAGCTGCTGGAT-----GGTGATGAGCCTGGGAAATGGAGGCTGGGTGAGCAG-----------AGACAGAAGA-GAAACACCCACCTGCTGTGACCTCACAAACACCCAGGCTGAGTTTTGATAAGACAAGTTGAATCACACTGGGGCGAC--AGC-CTCATCCTTCCAGG---TACAAACAAGAACAGGCCATGGTTAACCAAAGCTCCCCCATGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTTGTGGTTGTCTTCACTTCCTAC-------CTCCTAACCCTGGTGGGCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATACACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGACTTGTGTCCCCCAGATGCTGGTTAACCTCTGGGGCCC------AAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGGACCACTGAGTGCATCCTCTTGACAGTGATGGCTTTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCATTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCCCCATTGGCAAGTGGATGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTCTCCTGCGGGGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTATGGAGCCATTACCTGGGCAGTGCTGAGGATTAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2602753 939 -   3067355 ACCAGTGTGAGTCTCCATCCGCTGTCCAGTACATTCATGGTTTCCTCATTCTCACTAGACAATGTTTGACCAGAAAGAACAGGGAACGAGAAG--GAGCCGCTGGAT-----GGTGATAAGCCTGGGAAAAGGAGGCTGGGTGAGCAG-----------AGACAGAAGA-GAAGCACCCACCTGCTGTGACCTCACAAACACCCAGGCTGAGTTTTGATAAGGCAAGTTGAATCACACTGGGGTGAC--AGC-CTCATCCTTCCAGG---TACAAACAAGAAAAGACCATGGTTAACCAAAGCTCCCCCATGTGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGCACTGGAAAGGACTCTCTTCATGGTTGTCTTCACTTCCTAC-------CTCCTAACCCTGGTGG-CAACATACTCATCATCCTGCTGTCTGTGCTGAACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACGAGTTGTGTCCCCCAGATGTTGGTTAACCTCTGGGGCCC------A---AAGACCATCAGCTTCCTGGGCTGCTCTGTTCAGCTCTTCATCTTCCTGTCCCTGGGGACCACTGAGTGCATCCTCTTGACAGTGATGGCATTTGATCGCTACGTGGCTGTCTGCCAGCCTCTCCACTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAATCAGTGGTCCAGATACTATCCACCCTGTGCCTGCCCTTCTGCCCCCATCGGCAGGTGGATGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTATCCTGTGGGGACACCTCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTATGGAGCCATTACACGGGCAGTGTTGAGGATTAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30037181 940 + 171630274 ACCAGTGTAAGGCTCTATCTGCTGTCCAGCACATTCATGGTTTTCTCACTCTCACGGGACAATGTTTAACCAGGAAGAACAGAAAATGAGAAG--GAGCTGCTGGAT-----GGTGATCACCCTGGAAAAGTGAGGCTGGGAGAGTAG-----------AGACAGAAGA-GAAACTCACATCCGCTGTAACCTCACAAACACCCAGGCCGAC---TAATAAGACAGGTTGAATCACACTGGGGTGAC--AGC-CTCATCTCTCCAGA---TACAAACAGAAAGAGAACATGATTAACCAACGTTCTCCCATGGGCTTCATCCTTCTGGGCTTCTATGAACACCCAGCACAGGAAAGGATTCTCTTTGTGGTTGTCTTGACTTTCTAC-------GTTTTGATCCTGGTGGGCAACACACTCATCATCCTGCTGTCTGTGCTGAACCCCAGGCTCCACTCTTCAATGTACTTCTTCCTCTCCCACCTCTCCTTCTTGGATCTCTGCTTCACCACTAGCTGTGTTCCCCAGATGCTGGTCGACCTCTGGGGCCC------AAAGAGAACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGGACCACTGAGTGAATCCTTCTTACAGTGATGGCCTCTAATAGCTATGTGGCTATCTGCCAGCCCCTCCACTATGCCACCATCAT-CCACCCCCACCTGTGCTGGCAGCTGGCATCTGTGGTGTGGGTCATTGGGCTGGTGGAGTCACTAGTCCAGACACCATCCACCCTGTGCCTGCCCTTCTGCCCCCATCAGCAGGTAGATGATTTTGTCTGTGAAGTCCCACCTCTAATTCGACTCTCCTGTGGAGACACCTCCTACAACGAGATCCAGATGTCTGTTGCCAGTGTCTTCATCTTGGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTATGGAGCCATTGCTCGGGCAGTGCTGAGGATTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           186192 940 -    242197 ACCAGTGTGAGGCTCTATCTGCTGTCCAGTACATTCATGGTTTCCTCACTCTCACTGGACAATGTTTAACCCGGAAGAACAGAGAATGAGAAG--GAGCTGCTGGAT-----GGTGATCACCCTGGAAAAGGGAGGCTGGGAGAACAG-----------AGACAGCAGA-GAAACTCACATCCTCTGTAACCTCACAAACACCCAGGCTGAG---TAATAAGACAGTTTGAATCACACTGGGGTGAC--AGA-CTCATCTCTTCAGG---TAAAAACAGAAATAGGCCATGATTAACCAAAGCTCTCCCGTGGGCTTCATCCTTCTGGGCTTCTATGAACACCCAGCCCTGGAAAGGATTCTCTTTGTGGTTGTCTTGACTTTCTAC-------CTTTTGACCCCGGTGGGCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTCTTCCTCTCCAACCTCTCCTTCTTGGATCTCTGCTTCACCACGAGTTGTGTTCCCCAGATGCTGGTCAACCTCTGGGGCCC------AAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGGACCACTGAGTGCATCCTCCTTACAGTGATGGCCTTTGATCGCTACGTGGCTGTCTTCCAGCCCCTCCACTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCGTGGGTCATTGGGCTAGTGGAGTCACTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCCCCATCGGCAGGTGGATGATTTTGTCTGCAAGGTCCCAGCTCTAATTCGACTCTCCTGTGGAGACACCTCCTACAACGAGATCCAAATGGCTGTTGCCAGTGTCTTCATCTTAGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTATGGAGCCATTGCTCGGGCAGTGCTGAGGATTAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     178972 940 -   1771730 ACCAGTGTGAGGCTCTATCTGCTGTCCAGTACCTTCATGGTTTCCTCACTCACACTGGACAATGTTTAACCAGGAAGAACAGAGAATGAGAAG--GAGCTGATGGAT-----GGTGATCACCCTGGAAAAGGGAGGCTGGGAGAG--G-----------AGACAGAAGA-GAAACTCACATCCTCTGTAACCTCACAAACACCCAGGCTGAG---TAATAAGACAGGTTGAATCACACTGGAGTGACAGAGA-CTCATCTCCCCAGG---TACAAACAGAAACGGGCCATGATTAACCAAAGCTCTCCCGTGGGCTTCATCCTTCTGGGCTTCTATGAACACCCAGCACTGGAAAGGATTCTCTTTGTGGTTGTCTTGACTTTCTAC-------CTTTTGACCCTGGTGGGCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAGACTCCACTCTCCAATGTACTTCTTCCTCTCCAACCTCTCCTTCTTGGATCTCAGCTTCACCAAGGGTTGTGTTCCCCAGATGCTGGTCAACCTCTGGGGCCC------AAAGAAGACCATTAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGGACCACTGAGTGCATCTTCCTTACAGTGATGGTCTTTGATCGCTATGTGGCTGTCTGCCAGCCCCTCCACTATGCCACCATCAT-CCACCCCCACCTGTGCTGGCAGCTGGCATCTGTGGCGTGGGTCATTGGGCTGGTGGAGTCACTGGTCTAGACATCATCCACCCTGCGCCTGCCCTTCTGCCCCCATCGGCAGGTGGAGGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTCTCCTGTGGAGACACCTCCTACAACGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTAGTTGTGCCTCTCAGCCTCATCCTTGTCTCTTATGGAGCCATTGCTCAGGCAGTGCTGAGGATTAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     253617 938 -    457564 ACCAGTG--AGGCTCTATCTGCTGTCCAGTACATTCATGGTTTCCTCACTCTCACTGGACAATGTTTAACCAGGAAGAACAGAGAGCGAGAAG--GAGCTGCTGGAT-----GGTGATCACCCTGGAAAAGGGAGGCTGGGAGAGCAG-----------AGACAGAAGA-GAAACTCACATCCGCTGTAACCTCACAAACACCCAGGCTGAG---TAATAAGACAGGTTGAATCACACTGGGGTGAC--AGA-CTCATCTCTCCAGG---TAAAAACAGAAACAGGCCATGATTAACCAAAGCTCTCCCGTGGGCTTCATCCTTCTGGGCTTCTATGAACACCCAGCACTGGAAAGGATTCTCTTTGTGGTTGTCTTGACTTTCTAC-------CTTTTGACCCTGGTGGGCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTCTTCCTCTCCAACCTCTCCTTCTTGGATCTCTGCTTCACCACGAGCTGTGTCCCCCAGATGCTGGTCAACCTCTGGGGTCC------AAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGGACCACTGAGTGCATCCTCCTTACAGTGATGGCCTTTGATCGCTACGTGGCTGTCTGCCAGCCCCTCCACTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTGGCGTGGGTCATTGGGCTGGTGGAGTCACTGGTCCAGACACCATCCACCCTGCGCCTGCCCTTCTGCCCCCATCGGCAGGTGGATGATTTTGTCTGTGAGGTCCCAGCTCTAATTCGACTCTCCTGTGAAGACACCTCCTACAACGAGATCCAGATGGCTGTTGCCAGTGTCTTCATCTTGGTTGTGCCTCTTAGCCTCATCCTTGTCTCTTATGGAGCCATTGCTCGGGCAGTGCTGAGGATTAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                73749 924 + 123392446 GCCAGTGTGAGGCTCCATCTGTTTTCCAACACATTCATGGTTTCCTCATTCCCACTAGACAGTATTTGACCAGGATGAACAGAGGAAGAAAAG--GAGCGGCTCGG------------------------AAGAGGCTGGGAGAGCAG-----------AGGCAGAAGA-GAAATGTCCACCTGGTGTGACCCCACAAGCACGCAGGGTGAGTTGTGATAAAACGCATTGAGTCACACTGGTCTGAC--AGC-CTCATCCCTCCAGG---TCTAGACAAGAGCAGCCCATGGGCAACCAAAGCTCCCCAGAGGGCTTCCTCCTTCTGGGCTTCTCTGAACACCCAGGGCTGGAAAAGATTCTCTTCCTGGTCGTCTCAACTTCCTAC-------CTCCTGGCCCTTGTGGGAAACACACTCATCATCACGCTGTCTGTGCTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACCAGCTGTGTCCCCCAGATGCTGGTCAACCTCTGGGGCCC------AAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCCCTGGGGACCACTGAGTGCATCCTCCTGTCGGTGATGGCCTTTGACCGCTATGTGGCTGTCTGCCAGCCCCTCCACTACACCACCATCAT-CCAGCCCCGCCTGTGCCGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAATCAGTGATTCAGACACCACCCACCCTCCGCCTGCCCTTCTGCCCCCACCGGCAAGTGGATGATTTTGTCTGTGAGGTCCCTTCTCTAATCCAACTCTCCTGCGGGGACACATCCTACAATGAGATCCAGATGGCTGTTGCCAGTGTCCTGATCTTGATTGTGCCCCTCAGCCTCATCCTTGCCTCTTATGCCGCCATTGCCCGGGCAGTGCTGAGGATTAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     568435 926 +    730504 ATCAGTGTGAGGCTCCATCTGCTTTCCAACACATTCATGGTTTCCTCATTCCCACTAGACAACGTTTGACCAGGAGGAACAGGGGAAGAAAAG--GAGTGGCTGGGA-----A----------------AAAGAGGCTGGGAGAGCAG-----------AGGCAGAAGA-GAAACATCCACCCGGTGTGACCTCACAAGCAC-CGGGGTGCGTTGTGATAAAACACATTGAATCACACTAGTCTGAC--AGC-CTCATCCCTCCAGG---TCTGGACAAGAACAGGACATGGGCAACCACAGCTCCCCAGAGGGCTTCCTCCTTCTGGGCTTCTCTCAACACCCAGGACTGGAAAAGATTCTCTTCCTGGTTGTCTTAACTTCCTAC-------CTCCTGACCCTCGTGGGCAACACAGTCATCATCGTGCTGTCTGTGTTGGACCCCAGGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACCAGCTGTGTCCCCCAGATGCTGGTCAACCTCTGGGGCCC------AAAGAAGACCATCAGCTTCCTGGGCTGCTCTGTCCAGCTCTTCATCTTCCTGTCGCTGGGGACCACTGAGTGCATCCTCCTGTCAGTGATGGCCTTTGACCGCTATGTGGCTGTCTGCCAGCCCCTCCACTACGCCACCATCAT-CCACCCCCACCTGTGCCGGCAGCTGGCATCTGTGGCCTGGGTCATTGGGCTGGTGGAGTCAGTGGTTCAGACACCACCCACCCTCCGCCTGCCCTTCTGCCCCCACCGGCAAGTGGATGATTTTGTCTGCGAGGTCCCTTCTCTAATTCGACTCTCCTGTGGAGACACCTCCTACAATGAGATCCAGATGGCTGTAGCCAGTGTCCTGATCTTGATCGTGCCCCTCAGCCTCATCCTTGTCTCTTATGGTGCCATTGCCCAGGCAGTGCTGAGGATTAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            66587 934 +  18854210 AGCAGCGTGAAGCTCCAT----TGCCCAGCACCTTTTTGGTTTCTTTGCTCCCAATAGACAAGATTTGACCAAGAGGAACAGAAGAAGAGCAG--GAGCTGCAGGAT-----GCT--------------GATGACCCTGGGAAGGGAGCCTGCATGGCTAGACAGAAGA-GAAATGTCCACCTGATGTAA-CTTATAAGCAC-CCAGGTGAGTATTGATAGGACAGGTTGAATCACACTAGACTAAC--AGG-CTCATCCCTCCAGG---TCCAGACAAAAACAGGCCATGGGCAACCAAAGCTCCCCAGAGGGCTTCCTTCTTCTGGGCTTCTCTGAACACCCAGGGCTGGAAAAGATTCTCTTCCTGGTTGTCTTAACTGCCTAC-------CTCCTGACCCTGGTGGGCAACACACTCATCATCCTGCTGTCTGTGCTGGACCCCAAGCTCCACTCTCCAATGTACTTTTTCCTCTCCAACCTCTCCTTCTTGGACCTCTGCTTCACCACAAGTTGTGTCCCCCAGATGCTGGTCAACCTCTGGGGCCC------AAAGAAAACCATCAGCTTCCTGGGCTGCTCTGTGCAGCTCTTCATCTTCCTGTCCCTGGGGACCACTGAATGCATTCTCCTGACAGTAATGGCCTTTGACCGCTATGTGGCTGTCTGCCAACCCCTCCACTATGCCACCATCAT-CCACCCCCGCCTGTGCTGGCAGCTGGCATCTGTCTCCTGGGTTATTGGGCTGGTGGAGTCAGTGGTTCAGACACCACCCACCCTCCGCCTGCCCTTCTGCCCACACCGGCAAGTGGATGATTTTGTCTGCGAGGTCCCAGCTCTAATTCGACTCTCCTGTGCAGACACCTTCTACAATGAGATCCAAATAGCTGTTGCCAGTGTCCTAATCTTGATTGTGCCCCTCAGCCTCATCCTTGTCTCTTATGGTGCCATTGGCCGGGCAGTACTAAGGATTAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57900869 919 -  94987271 CCCAGTGTGAGGAGCCACCTGTTCTCCACCACACTCCTGGTTTCCTCTCAGCTAGTGGACTCTATCTGACCAGGAGGAAGAATGGAAGAAAAG--TCCTTA-----------GGTGACGGGCCTGGAGAAGGGAGCCTG-------AG-----------AAACATCAG--------TCTACCTTGTGTGTCCTGAGAAGTAGTCAGGGTGAGTTTTCACCAGGTCCTTTGTACCACACTAAGCTGAC--AGT-CTCATCCCTCCAAC---TAGATACAG----AGACCATGGTCAACCAGAGCTCCCCCGTGGGCTTCCTCCTGCTGGGCTTCTCTGAACACCCACAACTGGAAAAGGTTCTCTTCGTCGTTGTCTTGTGCTCCTAC-------CTCCTCACCCTCCTAGGAAACACACTAATCCTCCTGCTGTCCACCCTGGATCCCAGGCTCCACTCTCCAATGTACTTCTTCCTCTCTAACCTCTCCTTCTTGGACCTCTGCTTCACCACAACCTGTGTCCCCCAGATGCTGTTCAACCTCTGGGGCCC------CGAAAAGACCATCAGCTTCCTGGGATGCTTTGTCCAGCTCTTCATCTTCTTATCTCTGGGGACGACGGAGTGCATCCTGCTAGCAGTGATGGCCTTTGACCGCTATGTGGCTGTGTGCCAGCCCCTGCACTATGCCACCATCAT-CCACCCTCGCCTGTGTTGCCAGCTGGCAGCTGTGGCCTGGACGATTGGCCTAGTGGAGTCAGTAGTTCAGACGCCATCCACTCTGCGCCTGCCCTTCTGTCCCCACCATCAGGTTGACGACTTTGTGTGTGAGGTCCCTGCTTTGATTCGACTGTCCTGTGGGGACACCACCTATAATGAGATACAAATGGCTATTGCCAGTGTCTTCATCTTGGTTGTACCTCTGAGCCTCATCCTTGTCTCTTATGGTGCCATTGCCAGGGCAGTGCTGAGGATAAG
i mm10.chr17               I 7687 C 0
s canFam3.chr35            26203142 928 +  26524999 CCCCGTGTCCAGCACTGCCTGTCCCCCAGCAAGTCCTGCTGCCCCCAAAGCCTGCTGGACAGCA-CTGCCCAGGAGGAACATGAA--GGGAAG--GAGGTGCAGAGTGTGGAGGTGGAGTGCCTGGTAAA-GGACAC------GGTGG-----------AGACAGAAAAGGAGATATGTACCTGGGGTGAGCTGACCAGTACCAGGG--GAGGTTTGGGACAACAGCTCAGGACACACT----------GCC-CTCATCCTTCCAGG---CTGGGGCAGGAAA-----ATGGGCAACCAGAACTCCCCTGGGGGCTTCCTCCTTCTGGACTTCTCTGAACACCCAGGGCTAGAGAGAATCCTTTTTGTGGTTGTCCTCACTTCCTGTTGTGTTGTTCCTCACTCTGGTGAGCAACACCCTCATCATCCTGCTGTCTGTGCGGGACCCAAGGCTCCACTCCTCGATGTACTTTTTCCTCTCCAACCTGTCCTTCTTGGACCTGCGCTTCACCACAAGCTCCGTCCCCCAGCTGCTGGTCAACCTCTGCAGCCC------A---AAGACCACCAGCTTCCTTGGCTGCTCTGTTCAGCTCTTCATCTTTCTGTTCCTGGGGACCACAGAGTGCATCCACCTGAACATGATGGCCTTTGACCTCTACATGGCCATATGCCAGCCTCTGCACTATACCATCATCATGCCCCCGTTGCCTGTGCCGGCAGCTGGCGTCCATGGCCTGGGCCATCAGTCTGCTGGAGTCGGTGGTCCAGACACCACCCACTCTCCACCTGCCCTTGTGTCCCCACCAGCAGGGGGATGAGTTCGTGTGTGAGGTCCCAGCT-TAATCAGACTGTCTGGTGGGGACACCACCTACAACCAGATCCAGATGGCTGTCACCAGCATCCTCATCCTGCTCATGCCCATCGGCCTCATCCTGGTCTCTTACTGTGCCATTGCCCAGGCAGTGCTGAGGATTAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            10652 846 +    102524 ---AGAGGGGAGCCCCACCCCTTCCCCAGGGCATTGCCCACCTCCTCCTTCTCCCTAGA-AGTGCTGGA-CGGGAGGAAGAGTGGAGAAGGAGCTGTGCTGCTGGAT------GTGCT--------GAAAGGGAGGCTG-----GCGG-----------AG---GGAGA-GACGCGTCCACC-GCTGTGACCCGGCCAGCAC-CAGGC-GGGTCCTTCTCAAACAGCTGGGAGCCCCCCAGCCTCAC--GACGCTTGGCCATCCAGGATCTGCAGGAGAGCACAGA-------------------------GGGC----GCCTCCTGGGCTTCTTCGGACACCTGGCGCTGGAGAAGGTTCTCCTCGTGGTTGTCCTGACCTCCTAT-------TTCCC---------------TTCACTC-TCAACCTGCCAACCGTACCAGATCCCAGG-TCCACTCTCCAG----------------------CCTCTCCTTGGACCTCTGCTTCACCACGA-CCGCGTCCTGCAGCCGCCGATC-CCCTCTGGGGACCCCCTCTGGGGACCACTGTCAGCTTCCCTGGCTGCTCCACCCAGCTCTTCCTCCTCCTGCTCC--------ATTGA-CGTGTCCTTCCAGCAGTGGTGGCCTTTGACCGCCCCGTGGCTGTCTGCCAGCCCCTCCACTCTGTCAGCATCAC-GCACCCCCACCTCAGCCAGCAGCCGGTGGCTGTAGCCGGGGTCCCTGAGCTGGTGGACTCCCTGGTCTAGACACCACCC-----CTGCCTGCCCTTTTGCCCCCAGCGGCAGGTGGACGGCTTTGAGTGTGAGGTTCTGGCTCTAAGCTGTCTCCCCTGTGGAGACCCCAGCTACAGGGAGGTCCAGACTGCAGTGGCCAGCGTTCCCATCGCAATCGTGCCCCTCACCCTCATCCTCATCTCCCACGGGGCCACTGCCTGGGCCGTGCTGAGGAGTAA
i dasNov3.JH582591         C 0 C 0

a score=37490.000000
s hg38.chr6_GL000254v2_alt   854019 2 +   4827813 CT
s panTro5.chr6             29816696 2 + 175400573 CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30051317 2 + 173848474 CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5857823 2 +   6154872 CT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30048605 2 + 172585720 CT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29711452 2 - 170955103 CT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2756950 2 -   2996164 CT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     510353 2 +    766320 CT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28966428 2 -  71996105 CT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     143388 2 +    290775 CT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2603692 2 -   3067355 CT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30038121 2 + 171630274 CT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           187132 2 -    242197 CT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     179912 2 -   1771730 CT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     254555 2 -    457564 CT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                74673 2 + 123392446 TT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     569361 2 +    730504 CT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            67521 2 +  18854210 CT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57901788 2 -  94987271 CT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26204070 2 +  26524999 CT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            11498 2 +    102524 CT
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74567230 0 + 122973662 C

a score=4210557.000000
s hg38.chr6_GL000254v2_alt   854021 226 +   4827813 CTGCAAAAGGGCGGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTTAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTGCT
s panTro5.chr6             29816698 226 + 175400573 CTGCGAAAGGGCGGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTTAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30051319 226 + 173848474 CTGCGAAAGGGCGGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTTAACCTTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5857825 225 +   6154872 CTGCAAAAGGGCAGAGGAAAGCTTTT-GGACCTGCTCCTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTTAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74567230 226 + 122973662 CTGCAAAAGGGCGGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCACTGTGGTCACCCTGTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCTGTATGCCCAAGAGAGGAGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTTAACCCTCTCATATATGCCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAAATTGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30048607 226 + 172585720 CTGCAAAAGGGCGGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCGCTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTTTACCTCCAGCCCAAAACTCCCTATGCCCAAGAGAGGGGCA-AGTTCTTTGCTCTCTTCTATGCAGTGGGCACTCCTTCACTGAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29711454 226 - 170955103 CTGCAAAAGGGCGGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCGCTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTTTACCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCA-AGTTCTTTGCTCTCTTCTATGCAGTGGGCACTCCTTCACTGAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2756952 226 -   2996164 CTGCAAAAGGGCGGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCGCTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTTTACCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCA-AGTTCTTTGCTCTCTTCTATGCAGTGGGCACTCCTTCACTGAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTGCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     510355 226 +    766320 CTGCAAAAGGGCAGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCGCTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTTTACCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTGAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTGCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28966430 226 -  71996105 CTGCAAAAGGGCGGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCACTGTGGTCACACTCTTCTACAGCTCAGTCATTGCTGTTTACCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTGAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     143390 226 +    290775 CTGCAAAAGGGCAGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCGCTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTTTACCTCCAGCCCAAAAATCCCTACGCCCAAGAGAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTGAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCATTCAGGAGATTGCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2603694 226 -   3067355 CTACAAAAGGGCGGAGGAAAGCTTTTGGGACCTGCTCCTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTTTACCTCCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTAGGCACTCCTTTACTTAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACCAGGGCACTCAGGAGATTGCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30038123 226 + 171630274 CTGCAAAAGGGCAGAGGAAAGCTTTTGGGACCTGCTCTTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCCCTATGCCCAAGAGAAGGGCA-AGTTCTTTGGCCTCTTCTATGCAGTGGGCACTCCTTCACTTAACCCTCTCATATACATCCTGAGGAACAAGGAGGTAACCAGGGCATTGAGGAGATTGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           187134 226 -    242197 CTGCAAAAGGGCGGAGGAAAGCTTTCGGGACTTGCTCTTCCCACCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTACTTCCAGCCCAAAAATCCCTATGCCCAAGAGAAGGGCA-AGTTCTTTGTTCTCTTCTATGCAGTGGGCACTCCTTCACTTAACCCTCTCATATACACCCTGAGGAACAAGGAGGTCACCAGGGCATTGAGGAGATTGCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     179914 226 -   1771730 CTGCAAAAGGGCAGAGGAAAGCTTTCGGGACCTGCTCTTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTATCTCCAGCCCAAAAATCCCTATGCCCAAGAGAAGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTTAACCCTCTCACATACACCCTGAGGAACAAGGAGGTAACCGGGGCATTGAGGAGATTGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     254557 226 -    457564 CTGCAAAAGGGCGGAGGAAAGCTTTCGGGACCTGCTCTTCCCATCTCACTGTGGTCACCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCCCTATGCCCAAGAGAAGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGCACTCCTTCACTTAACCCTCTCATATACACCCTGAGGAACAAGGAGGTAACAAGGGCATTGAGGAGATTGCT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                74675 226 + 123392446 CTGCAAAAGGGAGGAGGAAAGCTTTTGGAACCTGCTCTTCCCATCTCACCGTTGTCATCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTGCAGCCCAAAAATCCCTATGCCCAAGAGAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGTGCTCCTTCTCTTAACCCTCTCATATACACCCTGAGGAACAAGGAGGTGAAGAGGGCATTCAGCAGGCTGCT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     569363 226 +    730504 CTGCAAAAGGGAGGAGGAAAGCTTTTGGAACCTGCTCCTCCCATCTCACGGTTGTCATCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCCCTATGCCCCAGAGAGGGGCA-AGTTCTTCGGTCTCTTCTACGCAGTGGGCACTCCTTCACTTAACCCCCTCATATACACCCTGAGGAACAAGGAGGTGAAGAGGGCATTCAGGAGGTTGCT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            67523 226 +  18854210 CTGCAAAAGGAAGGAGGAAAGCTTTTGGAACCTGCTCCTCCCATCTCATGGTTGTCATCCTCTTCTACAGCTCAGTCATTGCTGTCTACCTCCAGCCCAAAAATCCCTATGCCCAAGAAAGGGGCA-AGTTCTTTGGTCTCTTCTATGCAGTGGGAACGCCTTCACTTAACCCTCTCATATACACCCTGAGGAACAAAGAGGTAAAGAGTGCCTTCAGGAGGTTGCT
i otoGar3.GL873550         C 0 M 56
s mm10.chr17               57901790 226 -  94987271 CTGCAAAGGGGCGCAGGAAAGCTTTTGGGACCTGCTCTTCCCACCTCATTGTGGTCACTCTCTTCTACAGCTCAGTCATCGCTGTTTATCTGCAGCCCAAGAATCCTTATGCTCGAGAGAGGGGCA-AGTTCTTTGGTCTCTTCTATGCTGTGGGAACTCCTTCTCTTAACCCTCTCATATATACCCTAAGGAACAAGGAAGTAAAGAGGGCATTCAGGAGGCTGCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26204072 224 +  26524999 CAGCCAACCGGTGGAGGAAAGCATGTGGGACCTGCTTCTCCCCTCTCGTGGTGGTCACCCTCTTCTACAGATCAGCCATCGCTGTCTACCTCCAGCCCCAGAATGCCTATGCCC-AGAAAGGGGCATAGTTCTTCTGTCTGTTCTGTGCCGTGGGCACTGCAGCAATGAACC--CTCATTTACACCCTGAAAACCAAGGAGGTAAAGAGGGCTGTCAGAAGGTCGCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            11500 219 +    102524 CTGCGAAGGGG--ACAGGAGGCTTCTGGGACCTGCGCCTCTCCTCTCATCGTGGTCGCCCTCCTCTATGGCTCAGGCATTGCCGTCCACCTCCAGCCCAGAAATGCCCTGGCCT--GAGAGGGGCC-AGTCCTTGGGGCTCTCCT-CGCAGTGGGCACCCCTTCCCTCAACCCTCTCCTATACACCCTGGGGAACAAGGAGGGGAAGAGAGCAGTTGGGA--TTGCG
i dasNov3.JH582591         C 0 C 0

a score=98690.000000
s hg38.chr6_GL000254v2_alt   854247 6 +   4827813 GGGGAA
s panTro5.chr6             29816924 6 + 175400573 GGAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30051545 6 + 173848474 GGAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5858050 6 +   6154872 GGGGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74567456 6 + 122973662 GGGGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30048833 6 + 172585720 GGGGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29711680 6 - 170955103 GGGGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2757178 6 -   2996164 GGGGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     510581 6 +    766320 GGGGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28966656 6 -  71996105 GGGGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     143616 6 +    290775 GGGGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2603920 6 -   3067355 GGGGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30038349 6 + 171630274 GGGAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           187360 6 -    242197 AGGGAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     180140 6 -   1771730 GGGGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     254783 6 -    457564 AGGGAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                74901 6 + 123392446 GGGGAA
i micMur3.chr6             C 0 I 282
s proCoq1.NW_012152574v1     569589 6 +    730504 GGGGAA
i proCoq1.NW_012152574v1   C 0 I 280
s mm10.chr17               57902016 6 -  94987271 CTGGAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26204296 6 +  26524999 GGGGAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            11719 6 +    102524 GGGGGA
i dasNov3.JH582591         C 0 C 0
e otoGar3.GL873550            67749 56 +  18854210 M

a score=819765.000000
s hg38.chr6_GL000254v2_alt   854253  84 +   4827813 GGAAATGGGGCTC-----ACACA--------AAGCTGA--GGGAGAGCTGCTTAATGTGCTTTAAAAGAG-----AGGAG-ATTCTATGTGCTTT--------------------------------------------------------------------------------------TATCAGAAAG
s panTro5.chr6             29816930  84 + 175400573 GGAAATGGGGCTC-----ACACA--------AAGCTGA--GGGAGAGCTGCTTAATGTGCTTTAAAAGAC-----AGGAG-ATTCTATGTGCTTT--------------------------------------------------------------------------------------TATCAGAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30051551  84 + 173848474 GGAAATGGGGCTC-----ACACA--------AAGCTGA--GGGAGAGCTGCTTAATGTGCTTTAAAAGAC-----AGGAG-ATTCTATGTGCTTT--------------------------------------------------------------------------------------TATCAGAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5858056  84 +   6154872 GGAAATGGGGCTC-----ACACA--------AAGCTCA--GGGAGAGCTGCTTAATGTGCTTTAAAAGAG-----AGGAG-ATTCTATGTGCTTT--------------------------------------------------------------------------------------TATCAGAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74567462  84 + 122973662 GGAAATGGGGCTC-----ACACA--------AAGCTGA--GGGAGAGCTGCTTAATGTGCTTTAAAAGAG-----AGGAG-ATTCTATGTGCTTT--------------------------------------------------------------------------------------TATCAGAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30048839  84 + 172585720 GGAAATGGGGCTC-----ACACA--------AAGCTGA--GGGAGAGCTGCTTAATGTGCTTTAAAAGAG-----AGGAG-ATTCCATGTGCTTT--------------------------------------------------------------------------------------TATCAGAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29711686  84 - 170955103 GGAAATGGGGCTC-----ACACA--------AAGCTGA--GGGAGAGCTGCTTAATGTGCTTTAAAAGAG-----AGGAG-ATTCCATGTGCTTT--------------------------------------------------------------------------------------TATCAGAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2757184  84 -   2996164 GGAAATGGGGCTC-----ACACA--------AAGCTGA--GGGAGAGCTGCTTAATGTGCTTTAAAAGAG-----AGGAG-ATTCCATGTGCTTT--------------------------------------------------------------------------------------TATCAGAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     510587  84 +    766320 GGAAATGGGGCTC-----ACACA--------AAGCTGA--GGGAGAGCTGCTTAATGTGCTTTAAAAGAG-----AGGAG-ATTCCATGTGCTTT--------------------------------------------------------------------------------------TATCAGAAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28966662  84 -  71996105 GGAAATGGGGCTC-----ATACA--------AAGCTGA--GGGAGAGCTGCTTAATGTGCTTTAAAAGAG-----AGGAG-ATTCCATGTGCTTT--------------------------------------------------------------------------------------TATCAGAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     143622  84 +    290775 GGAAATGGTGCTC-----ACACA--------AAGCTGA--GGGAGAGCTGCTTAATGTGCTTTAAAAGAG-----AGGAG-ATTCCATGTGCTTT--------------------------------------------------------------------------------------TATCAGAAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2603926  84 -   3067355 GGAAATGGGGCCC-----ACACA--------AAGCTAA--GGGAGAGCTGCTTAATGTGCTTTAAAAGAG-----AGGAG-ATTCTATGTGCTTT--------------------------------------------------------------------------------------TATCAGAAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30038355  84 + 171630274 GGAAATGGAGCTC-----ACACA--------AAGCTGA--GGGAGAGTTGCTTAATATGCTTTAAAAGAG-----AAGAG-ATTCTATGTGCTTT--------------------------------------------------------------------------------------CACTGGAAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           187366  84 -    242197 GGAAATAGAGCTC-----ACACA--------AAGCCGA--GGGAGAGCTGCTTAATATGCTTTAAAAGAG-----AAGAG-ATTCTGTGTGCTTT--------------------------------------------------------------------------------------TATCAGAAAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     180146  84 -   1771730 GGAAATGGAGCTC-----ACACA--------AAGCTGA--GGGAGAGCTGCTTAATATGCTTTAAAAGAG-----AAGAC-ATTCTGTGTACTTT--------------------------------------------------------------------------------------TATCAGAAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     254789  79 -    457564 GGAAATGGAGCTC-----ACACA--------AAGCTGA--GGGAGAGCTGCTTAATATGCTTTAAAAGAG-----------ATTCTATGTGCTTT--------------------------------------------------------------------------------------TATCAGAAAG
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57902022  63 -  94987271 GGAAGTGAAGCCCGGCTGACACACTCTCAGTAAGCTGAATGGGAAATCTGC-----ATGCCTTGTAGG---------------------------------------------------------------------------------------------------------------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26204302  79 +  26524999 --AGACAGGG--------ATACA--------TGGGAGA--GCTGAGCCCGCTCCGTGTGCTTTCCAGTCC-----AGAAGCGGTCGTCAGGCTCC--------------------------------------------------------------------------------------TGTCAGAGA-
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            11725 171 +    102524 -----TGGAGACC-----CCAGG-------GAGGGTGA--GGGACAGCTGCCTGGAGTGCCTTAAGACAGTGAGGAGAAG-ATTCTTCATGTTTTATTTTTGTGTTTGAGCTCTTGCATTCTGGATTTTTTTAATAGTCTTTTTTTTTTCCACAAAGATACATACAGCACAAAAAATGCTACAACAAAAAG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                74907 282 + 123392446 I
e proCoq1.NW_012152574v1     569595 280 +    730504 I
e otoGar3.GL873550            67749  56 +  18854210 M

a score=1743717.000000
s hg38.chr6_GL000254v2_alt   854337 223 +   4827813 TTTGAGTTCCC----TGCCCCTCTGCCTTCTT--------------------------CACACCCATTAC-----ATTGTGGGAATGGATGAAAG--CCACATGTCTG----------------------------T---------------GTGTGTGCA-----TGTATGT----------GTGC-------AAGAGACAGCGA-CTGA-AATGTAGTAAAGGG-----AGG----TATCTTTATGCGAAAAATT----A------TAGGCATCAAGT---ATATTTTATA---TTTTTTTCTACTTTA--------AGTCTTCGCCTCCATA---GTCATGTTCCTACCTTTATCACTTC
s panTro5.chr6             29817014 222 + 175400573 TTTGAGTTCCC----TGCCCCTCTGCCTTCTT--------------------------CACACCCATTAC-----ATTGTGGGAATGGATGAAAG--TCACATGTCTG----------------------------T---------------GTGTGTGCA-----TGTATGT----------GTAC-------AAGAGACAGCAT-CTGA-AATGTAGTAAAGGG-----AGG----TATCTTTATGCGAAAAATT----A------TAGGCATCAAGT---ATATTTTAT----TTTTTTTCTACTTTA--------AGTCTTCGCCTCCATA---GTCATGTTCCTACCTTCATCACTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30051635 221 + 173848474 TTTGAGTTCCC----TGCCCCTCTGCCTTCTT--------------------------CACACCCATTAC-----ATTGTGGGAATGGATGAAAG--TCACATGTCTG----------------------------T---------------GTGTGTGCA-----TGTATGT----------GTAC-------AAGAGACAGCGT-CTGA-AATGTAGTAAAGGG-----AGG----TATCTTTATGCGAAAAATT----A------TAGGCATCAAGT---ATATTTTA-----TTTTTTTCTACTTTA--------AGTCTTCGCCTCCATA---GTCATGTTCCTACCTTCATCACTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5858140 223 +   6154872 TTTGAGTTCCC----TGCCCCTCTGCCTTCTT--------------------------CACACCCATTAC-----ATTGTGGGAATGGATGAAAG--CCACATGTCTG----------------------------T---------------GTGTGTGCA-----TGTATGT----------GTGC-------AAGAGACAGCAT-CTGA-AATGTAGTAAAGGG-----AGG----TATCTTTATGCGAAAAATT----A------TAGGCATCAAGT---ATATTTTATA---TTTTTTTCTACTTTA--------AGTCTTCGCCTCCATA---GTCATGTTCCTACCTTTATCACTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74567546 226 + 122973662 TTTGAGTTCCC----TGCCCCTCTGCCTTCCT--------------------------CACACCCATTAC-----ATTGTGAGAATGGATGAAAG--CCACATGTCTG----------------------------T---------------GTGTGTGCA-----TGTATGT----------GTGC-------AAGAGACAGCGT-CTGA-AATGTAGTAAAGGG-----AGG----TATCTTTATGCGAAAAATT----A------TAGGCATCAAGTATAATATTTTACA---TTTTTTTCTATTTTA--------AGTCTTCGCCTCCATA---GTCATGTTCCTACTTTTATCACTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30048923 214 + 172585720 TTTGAGTTCCC----TGCCCCTCTGCCTTCCT--------------------------CACACCCATTAC-----ATTGCGAGAATGGATGAAAG--CCACATGTCTG----------------------------T---------------GTGTATGC-----------------------GTGC-------AAGAGACAGCAT-CTGA-AATGTAGTAAAGGC-----AGG----TATCTTTATGTGAAAAATT----A------TAGGCATTAAGTATAATATTTTA-----TATTTTTCTATTTT----------GTCTTCACCTCCATA---GTCATGTTCCTACCTTTATCATTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29711770 214 - 170955103 TTTGAGTTCCC----TGCCCCTCTGCCTTCCT--------------------------CACACCCATTAC-----ATTGCGAGAATGGATGAAAG--CCACATGTCTG----------------------------T---------------GTGTATGC-----------------------GTGC-------AAGACACAGCAT-CTGA-AATGTAGTAAAGGC-----AGG----TATCTTTATGTGACAAATT----A------TAGGCATTAAGTATAATATTTTA-----TATTTTTCTATTTT----------GTCTTCGCCTCCATA---GTCATGTTCCTACCTTTATCATTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2757268 214 -   2996164 TTTGAGTTCCC----TGCCCCTCTGCCTTCCT--------------------------CACACCCATTAC-----ATTGCGAGAATGGATGAAAG--CCACATGTCTG----------------------------T---------------GTGTATGC-----------------------GTGC-------AAGACACAGCAT-CTGA-AATGTAGTAAAGGC-----AGG----TATCTTTATGTGACAAATT----A------TAGGCATTAAGTATAATATTTTA-----TATTTTTCTATTTT----------GTCTTCGCCTCCATA---GTCATGTTCCTACCTTTATCATTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     510671 214 +    766320 TTTGAGTTCCC----TTCCCCTCTGCCTTCCT--------------------------CACACCCATTAC-----ATTGTGAGAATGGATGAAAG--CCACATGTCTG----------------------------T---------------GTGTATGC-----------------------GTGC-------AAGAGACAGCAT-CTGA-AATGTAGTAAAGGC-----AGG----TATCTTTATGTGACAAATT----A------TAGTCATTAAGTATAATATTTTA-----TATTTTTCTATTTT----------GTCTTCGCCTCCATA---GTCATGTTCCTACCTTTATCATTTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28966746 212 -  71996105 TTTGAGTTCCC----TGCCCCTCTGCCTTCCT--------------------------CACACCCATTAC-----ATTGCGAGAATGGATGAAAG--CCAC--GTCTG----------------------------T---------------GTGTATGC-----------------------GTGC-------AAGAGACAGCAT-CTGA-AATGTAGTAAAGGC-----AGG----TATCTTTATGTGACAAATT----A------TAGGCATTAAGTATAATATTTTA-----TATTTTTCTATTTT----------GTCTTCGCCTCCATA---GTCATGTTCCTACCTTTATCATTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     143706 214 +    290775 TTTGAGTTCAC----TGCCCCTCTGCCTTCCT--------------------------CACACCCATTAC-----ATTGTGAGAATGGATGAAAG--CCACATGTCTG----------------------------T---------------GTGTATGC-----------------------GTGC-------AAGAGACAGCAT-CTGA-AATGTAGTAAAGGC-----AGG----TATCTTTATGTGACAAATT----A------TAGTCATTAAGTACAATATTTTA-----TATTTTTCTATTTT----------GTCTTCGCCTCCATA---GTCATGTTCCTACCTTTATCATTTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2604010 212 -   3067355 TTTGAGTTCCC----TGCCCCTCTGCCTTCCT--------------------------CACACCCATTAC-----ATTGCGAGAATGGATGAAAG--CCAC--GTCTG----------------------------T---------------GTGTATGC-----------------------GTGC-------AAGAGACAGCAT-CTGA-AATGTAGTAAAGGG-----AGG----TATCTTTATGTGACAAATT----A------TAGGCATTAAGTATAATATTTTA-----TATTTTTCTATTTT----------GTCTTTGCCTCCATA---GTCATGTTCCTGCCTTTATCATTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30038439 239 + 171630274 TTTGAGTTCCC----T-CTCCTCTGCCTTCCT--------------------------CACACCCATCAC-----GCTGTGACAATGGATGAAAG--TCACTtgtctgtgcatgtatgcggt--------------t---------------gtgcgtgtg-----tgtgtgt------gcatgtgC-------AAGAGACAGAGT-CTGA-AACGTAGTAAAAGG-----AGG----TATCCTTATGTGAAAATTT----G------TAGAAATCAATA---ATATTTTAT----CTTTTTTCTATTTTA--------AGTCTTCGCCTCCATA---TTCATGTTCCTACCTTTATCATTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           187450 248 -    242197 TTTGAGTTCCC----TGCTCCTCTGCCTTCCT--------------------------CACACCCATCAC-----ATTGTGACAACGGATAAAAG--TCACAtgtctgtgcatgtatgtggttgtgtgtgtgtgtgt---------------gtgtgtgtg-----tgtgtgt------gCACATGC-------AAGAGATAGGGT-TTGA-AATGTAGTAAAAGG-----AAG----TATCCTTATGTGAAAATTT----G------TAGAAATCAGGA---ATAT----------TTTCTTCTATTTTA--------AATCTTTGCATCTATA---TTCATGTTCCTACCTTTATCATTTC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     180230 240 -   1771730 TTTGAGTTCCC----TGCTCCTCTGCCTTCCT--------------------------CACACCCATCAC-----ATTGTGACAACGGATGAAAG--TCACAtgtctgtgtatgtatgcggt--------------t---------------gcgtgtgtg-----tgtgtgt------gCACATGC-------AAGAGATAGAGT-CTGA-AATGTAGTAAAAGG-----AGG----TATCCTTATGTGAAAGTTT----G------TAGAAATCAAGA---ATATTTTAT----CTTTTTTCTATTTTA--------AATCTTCGCCTCCATA---TTCGTGTTCCTACCTTTATCATTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     254868 237 -    457564 TTTGAGTTCCC----TGCTCCTCTGCCTTTCT--------------------------CACACCCATCAC-----ACTGTGACAACAAATGAAAG--TCACACGTCTGTGCATGTATGCAGT--------------T---------------GTGCGTGTG-----TGTGTGT------GCACGTGC-------AAGAGATAGAGT-CTGA-AAT---GTAAAAGG-----AGA----TATCCTTATGTGAAAATTT----G------TAGAAATCATGA---ATATTTTAT----CTTTTTTCTATTTTA--------AATCTTCGCCtccata---ttcatgttcctacctttatcatttc
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            67806 177 +  18854210 TTTAAATTACC----CAC-CCTCTGTCTTCCT----------------------------CATCCATCAT-----ACCACAGCAATAGATGATAG--CCAGCTCTGTA----------------------------T---------------GTGTGCGT-----------------------GAGA-------GAGAGGTAGAGA-CTGAGAATATGGTAAATGG-----AGGTAAATATCTTTGTCAGAAAAG--------------ATGAATTAAATTTAATATCTCCT----CTGTTCTCTCTTTT------------------------------------------TTAA-------
i otoGar3.GL873550         M 56 C 0
s mm10.chr17               57902085 191 -  94987271 CTTAAGTT-------TTCCTCCCTAACATCTT--------------------------CAGACCTATCCT-----GCCTCTGTAGTAGATGACAG--AC-------------------------------------T---------------GTAAG--------------------------ACAC-------AAAGAAGA-------GA-GGTTCAGTAAAGG-------AG----TATAACTATGCAAAAACCTTACCA------CATGAATCAAAT---GTAATCTACCTGTATTTTCATTAATTC----------ATCCTCGTCCTCATACGCTTCATCTCATTGACTT---------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26204381 221 +  26524999 ----AGCTCCC----CACACCTGTGCCCT-------------------------------CACTCATCCC-----CCCACGCCCATGGACGATGG--CTCtgtgtgtg----------------------------t---------------gtgtgtgta-----cgtctgcatttctgtgtgtgCCCTGCCTGCGCGACAGAGC-CTGG-GCTGATG---AGGG-----ATGCA--CATCTCCATGTGAAGCAGT----C------TACAAATCAGAT----TACTTCCT----CTTTGCTTTATTTTGTCTTTAATGGTCCTTGCCTCCACC---ATGATGTGCC---------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            11896 291 +    102524 TATGAGTTTCCCATATACCTCACTCCCTCCACATCAGCAACCTCCCTCTTCACTGTGGCACACCTGTCACTTCATGTTTTGTCAATGACTGTGAGTTCCCCACATCTG----------------------------TCAGCCACAGCGATGGGTGATGGCACACACTGTATGT----------GTGT-------AAGAGACAGAGAGCTGG-AGGGTGGGCAAGGAGAGCTAGG----TGTCTCTCTACAAAACATT----ACCATATTAGGAATTAAAGTTAACATTTTCC----CCTTTCACTATTCT----------CTTTCCAGCCTCATG---AGCTTG-CCCTAATTTTATCACGCC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                74907 282 + 123392446 I
e proCoq1.NW_012152574v1     569595 280 +    730504 I

a score=1277.000000
s hg38.chr6_GL000254v2_alt   854560 1 +   4827813 -C
s panTro5.chr6             29817236 1 + 175400573 -C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30051856 1 + 173848474 -C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5858363 1 +   6154872 -C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74567772 1 + 122973662 -C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30049137 1 + 172585720 -C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29711984 1 - 170955103 -C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2757482 1 -   2996164 -C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     510885 1 +    766320 -C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28966958 1 -  71996105 -A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     143920 1 +    290775 -C
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2604222 1 -   3067355 -C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30038678 1 + 171630274 -C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           187698 1 -    242197 -C
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     180470 1 -   1771730 -C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     255105 1 -    457564 -c
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     569875 1 +    730504 -C
i proCoq1.NW_012152574v1   I 280 C 0
s mm10.chr17               57902276 1 -  94987271 -T
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            12187 1 +    102524 A-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                74907 282 + 123392446 I
e canFam3.chr35            26204602 0 +  26524999 C
e otoGar3.GL873550            67983 0 +  18854210 C

a score=314157.000000
s hg38.chr6_GL000254v2_alt   854561 23 +   4827813 ------------------------------ATTTTTAATTCCCCTC-------CCTTGCC
s panTro5.chr6             29817237 23 + 175400573 ------------------------------ATTTTTAATTCCCCTC-------CCTTGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30051857 23 + 173848474 ------------------------------ATTTTTAATTCCCCTC-------CCTTGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5858364 23 +   6154872 ------------------------------ATTTTTAACTCCCCTC-------CCTTGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74567773 23 + 122973662 ------------------------------ATTTTTAATTCCCCTC-------CCTTGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30049138 23 + 172585720 ------------------------------ATTTTTAATTCCCCTC-------CCTTGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29711985 23 - 170955103 ------------------------------ATTTTTAATTCCCCTC-------CCTTGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2757483 23 -   2996164 ------------------------------ATTTTTAATTCCCCTC-------CCTTGCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     510886 23 +    766320 ------------------------------ATTTTAAATTCCCCTC-------CCTTGCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28966959 23 -  71996105 ------------------------------ATTGTTAATTCCCCTC-------CCTTGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     143921 23 +    290775 ------------------------------ATTTTAAATTCCCCTC-------CCTTGCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2604223 23 -   3067355 ------------------------------ATTTTTAATTCCCCTC-------CCTTGCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30038679 23 + 171630274 ------------------------------ATTTCTAATTCCCCTC-------CCTTGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           187699 23 -    242197 ------------------------------ATTTCTAATTCCCCTC-------CCTTTCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     180471 23 -   1771730 ------------------------------ATTTCTAATTCCCCTC-------CCTTGCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     255106 23 -    457564 ------------------------------atttctaattcccctc-------ccttgcc
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                75189 23 + 123392446 ------------------------------ATTTATAACTCCCCTC-------CCTTGTC
i micMur3.chr6             I 282 C 0
s proCoq1.NW_012152574v1     569876 23 +    730504 ------------------------------ATTTATAACTCCCTTC-------CCTTGTC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            67983 18 +  18854210 -----------------------------------TAGTTCCCCTC-------CCTTATC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57902277 23 -  94987271 ------------------------------ATCTCTAATTCCTTTC-------CCTTCCC
i mm10.chr17               C 0 I 2610
s canFam3.chr35            26204602 18 +  26524999 -----------------------------------TAAATCATCTG-------TCATAAC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            12188 60 +    102524 AGGTCTAGCACCACCACTCCCTGGCCGTCCATCACCATCTCCTCCCCTCATGACCTTGCC
i dasNov3.JH582591         C 0 C 0

a score=20302.000000
s hg38.chr6_GL000254v2_alt   854584  5 +   4827813 ----------------ATATC-------
s panTro5.chr6             29817260  5 + 175400573 ----------------ATATC-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30051880  5 + 173848474 ----------------ATATC-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5858387  5 +   6154872 ----------------ATATC-------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74567796  5 + 122973662 ----------------ATATC-------
i nomLeu3.chr1a            C 0 I 308
s rheMac8.chr4             30049161  5 + 172585720 ----------------GTATG-------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29712008  5 - 170955103 ----------------GTATG-------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2757506  5 -   2996164 ----------------GTATG-------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     510909  5 +    766320 ----------------GTATG-------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28966982  5 -  71996105 ----------------GTATG-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     143944  5 +    290775 ----------------ATATG-------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2604246  5 -   3067355 ----------------GTATG-------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30038702  5 + 171630274 ----------------ATATC-------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           187722  5 -    242197 ----------------ATATC-------
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     180494  5 -   1771730 ----------------ATATC-------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     255129  5 -    457564 ----------------atatc-------
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                75212  5 + 123392446 ----------------ATGTC-------
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     569899  5 +    730504 ----------------ACATC-------
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            68001  5 +  18854210 ----------------ATACC-------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26204620  3 +  26524999 ------------------ATG-------
i canFam3.chr35            C 0 I 2
s dasNov3.JH582591            12248 28 +    102524 CTAACGTCATCACTCCATGTCTAGCACC
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57902300 2610 -  94987271 I

a score=2453120.000000
s hg38.chr6_GL000254v2_alt   854589 184 +   4827813 CCCACTATTCCTTCACCTCCAATTCTAATTCCTACC------------------A-TATCTTCTTTGCTTCTCCCTCA-TGTTTTTCCCACTTCACTATATGT---CTGTTTTGTATTCTCATTCTATTTTATTCCTCAAATAACAGCAAAAGagaaggggaagctgaagcccagctaagttcggaaactcacccaagaacacacag
s panTro5.chr6             29817265 184 + 175400573 CCCACTATTCCTTCACCTCCAATTCTAATTCCTACC------------------A-TATCTTCTTTGCTTCTCCCTCA-TGTTTTTCCCAATTCACTATATGT---CTGCTTTGTATTCTCATTCTATTGTATTCCTCAAATAACAGCAAAAGagaaggggaagctgaagcccaggtaagttcagaaactcacccaagaacacacag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30051885 184 + 173848474 CCCACTATTCCTTCACCTCCAATTCTAATTCCTACC------------------A-TATCTTCTTTGCTTCTCCCTCA-TGTTTTTCCCACTTCACTATATGT---CTGCTTTGTATTCTCATTCTATTGTATTCCTCAAATAACAGCAAAAGagaaggggaagctgaagcccaggtaagttcagaaactcacccaagaacacacag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5858392 184 +   6154872 CCCACTATTCCTTCACCTCCAATTCTAATTCCTACC------------------A-TATCTTCTTTGCTTCTCCCTCA-TGTTTTTCCCACTTCACTATATGT---CTGTTTTGTATTCTCATTCTATTTTATACCTCAAATAACAGCAAAAGagaaggggaagctgaagcccaggtaagttcagaaactcacccaagaacacacag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74568109 184 + 122973662 CCCACTATTCCTTCACCTCCAATTCTAATTCCTACC------------------A-TATCTTCTTTGCTTCTCCCTCA-TGTTTTTCCCACTTTGCTATATGT---CTGTTTTGTATTCTTATTCTATTTTATTCTTCAAATAACAGCAAAAGagaaggggaagctgaagcccagataagttcagaaactcacccaggaacacacag
i nomLeu3.chr1a            I 308 C 0
s rheMac8.chr4             30049166 183 + 172585720 CCCACTATTCCTTCACCTCCAATTCTAATTCCTACC------------------A-TATCTTCTTTGCTTCTCCCTCA-TGTTTTT-CCACTTCGTTATATGT---CTGTTTTGCATTCTCATTCTATTTTATTCCTCAAATAACAGCAAAAGagaaggggaagctgaaactcagttaagttcagaaactcacccaggaacacacag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29712013 183 - 170955103 CCCACTATTCCTTCACCTCCAATTCTAATTCCTACC------------------A-TATCTTCTTTGCTTCTCCCTCA-TGTTTTT-CCACTTCGTTATATGT---CTGTTTTGCATTCTCATTCTATTTTATTCCTCAAATAACAGCAAAAGagaaggggaagctgaaacccagttaagttcagaaactcacccaggaacacacag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2757511 183 -   2996164 CCCACTATTCCTTCACCTCCAATTCTAATTCCTACC------------------A-TATCTTCTTTGCTTCTCCCTCA-TGTTTTT-CCACTTCGTTATATGT---CTGTTTTGCATTCTCATTCTATTTTATTCCTCAAATAACAGCAAAAGagaaggggaagctgaaacccagttaagttcagaaactcacccaggaacacacag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     510914 183 +    766320 CCCACTATTCCTTCACCTCCAATTCTAATTCCTACC------------------A-CGTCTTCTTTGCTTCTCCCTCA-TGTTTTT-CCACTTCGTTATATGT---CTGTTTTGCATTCTCATTCTATTTTATTCCTCAAATAACTGCTAAAGagaaggggaagctgaaacccagttaagttcagaaactcacccaggaacacacag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28966987 183 -  71996105 CCCACTATTCCTTCACCTCCAATTCTAATTCCTACC------------------A-CATCTTCTTTGCTTCTCCCTCA-TGTTTTT-CCACTTCGTTATATGC---CTGTTTTGCATTCTCATTCTATTTTATTCCTCGAATAACAGCAAAAGagaaggggaagctgaaacccagttaagttcagaaactcacccaggaatacacag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     143949 183 +    290775 CCCACTATTCCTTCACCTCCAATTCTAATTCCTACC------------------A-CATCTTCTTTGCTTCTCCCTCA-TGTTTTT-CCACTTCGTTATATGT---CTGTTTTGCATTCTCATTCTATTTTATTCCTCAAATAACAGCtaaagataaggggaagctgaaacccagttaagttcagaaactcacccaggaacacacag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2604251 183 -   3067355 CCCACTATTCCTTCACCTCCAATTCTAATTCCTACC------------------A-CATCTTCTTTGCTTCTCCCTCA-TGTTTTT-CCACTTTGTTATATGT---CTGTTTTGCATTCTCATTCTATTTTATTCCTCAAATAACAGCAAAAGagaaggggaagctgaaacccagttaagttcagaaactcacccaggaacacacag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30038707 178 + 171630274 CGCACTATTCTTTCACCTCCAATTCTCATTCCTACC------------------A-TGTCTTCTTTGCTTCTCCCTCA-TGTTTTTCCAACTTGGTTATATGT---CTGTTTTGCATTCTCATtctagttcattccccaaataacagcaaacga------aaagctaaagcccagataagttcagaaactcacccaggaacacacag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           187727 196 -    242197 CCCACTATTCCTTCACCTCCAATTCTCATTCCTACCAGTTTTATAAATGTATAAA-TGTCTTCTTTGCTTCTTCCTCA-TGTTTTTCCCACTTGGTTATATGC---CTGTTTTGCATTCTCATtctagttcattccccaaataacagcaaagga------gaagctgaagcccagataagttcagaaactcacccaggaacacacag
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     180499 178 -   1771730 CCCACTATTCCTTCGCCTCCAATTTTCATTCCTATC------------------A-TGTCTTCTTTGCTTCTCCCTCA-TGTTTTTCCCACTTGATTATATGC---CTGTTTTGCATTCTCATTCTTGTTCATTCCCCAAATAACAGCAAAgga------gaagccaaagcccagataagttcagaaactcacccaggaacacacag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     255134 177 -    457564 cCCACTATTCCTTCACCTCCAATTCTCATTCCTACC------------------A-TGTCTTCTTTGCTTCTCCCTCA-TGTTTTTCCCACTGGGTTATATGC---CTGTTTTGCATTCTCATtctagttaattccccaaataacagcaaagga------gaagccg-agcccagatgagttcagaaactcacccaggaacacacag
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                75217 182 + 123392446 GTCACTGTTTCTTCACCTCCAATTCTAATTCCTACA------------------G-TATGTTCTTTGATTCTCCCTCA-AGTTTTT-CCTCTCCCTTATATGT---CTGTTTTGCATTCTGGCTCTATTTCATCTCCCAAATAACAGTAAGGGAGGGTggaa-gctgacgcccaggtaagttcatgaactcacccaagaacacacag
i micMur3.chr6             C 0 I 41
s proCoq1.NW_012152574v1     569904 175 +    730504 GTCACTATTTCTTCACCTCCAATTCTAACTCCTACG------------------A-TATCCTCTTTGGTTCTCCCTCA-ATTTTTT-CCACTTCCTTGTATGT---CTGTTTTGCATTCT-GTTCTTTTtcatttcccaaataatagcaagggagagtggaa-------gcccagataagttcagaaactcatccaagaacacacag
i proCoq1.NW_012152574v1   C 0 I 41
s otoGar3.GL873550            68006 181 +  18854210 ATCACTA----TTCACCTCCAATTCTAATTCCTACA------------------GTTATCTTCCTTGCTTCTCTCTTACGTTTTTT-CCACTTTCCTATATGT---CCATTTTGCATTGTCCTTTTACTTCATTTCCCAAATAACAGACAGGGagagagggaagctgaaacccagacaagttcagaaattcacccaaggacacacag
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26204625 155 +  26524999 -----------TCCACCCCC-ATTTTGATCCCCGCC------------------A-CATC--ATTTGCTTCTCTGCCC-AGCTTTT-CCACTTACTTATAT---------TTTGCATTGTCCATCCACTCTTCCTCACAAAGGACAGCAGGAGG------GCAGCTGAGG-TCAGGCCAGCTCTGAAACCAGCCCAAGAA-ATGCAA
i canFam3.chr35            I 2 C 0
s dasNov3.JH582591            12276 160 +    102524 ATCACCATCTCTCCACCTCCATTTCCCATTCC---C------------------A-CGCTCTCTCTGCTGTGCCCTTG-GGTCCTG-CCCCCTCTTCTCATCTCTCCTGCTTTgcattctcattctgttt----------atcacagt------------gaacctgaagcccaggtgagttcagaaactcacccaagagcacaca-
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57902300 2610 -  94987271 I

a score=337806.000000
s hg38.chr6_GL000254v2_alt   854773 31 +   4827813 tgtccacagcatcagaactaaaatccaggcc
s panTro5.chr6             29817449 31 + 175400573 tgtccacagcatcagaactaaaatccaggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30052069 31 + 173848474 tgtccacagcatcagaactaaaatccaggcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5858576 31 +   6154872 tgtccacagcatcagaactaaaatccaggcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74568293 31 + 122973662 tgtccacagcatcagaactaaaatccaggcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30049349 31 + 172585720 cgtccacagcatcagaactaaaatccaggcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29712196 31 - 170955103 cgtccacagcatcagaactaaaatccaggcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2757694 31 -   2996164 cgtccacagcatcagaactaaaatccaggcc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     511097 31 +    766320 tgtccacagcgtcagaactaaaatccaggcc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28967170 31 -  71996105 tgtccacagcatcagaactaaaatccaggcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     144132 31 +    290775 tgtccacagcgtcagaactaaaatccaggcc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2604434 31 -   3067355 tgtccacagcatcagaactaaaatccaggct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30038885 28 + 171630274 ---ccacagcatcagaactaaaatctaggcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           187923 28 -    242197 ---ccacagcatcagaactaaaatctaggcc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     180677 28 -   1771730 ---ccacagcatcagaactaaaatctaggcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     255311 28 -    457564 ---ccacagcatcagaactaaaatctaggcc
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            68187 22 +  18854210 ---------tattagaactaaaagccaggtc
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26204780 21 +  26524999 ----------TTTAGACCGAAGATCCAAGCC
i canFam3.chr35            C 0 I 768
s dasNov3.JH582591            12436 17 +    102524 -------agtgttagagcttgacc-------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                75399 41 + 123392446 I
e mm10.chr17               57902300 2610 -  94987271 I
e proCoq1.NW_012152574v1     570079 41 +    730504 I

a score=243877.000000
s hg38.chr6_GL000254v2_alt   854804 23 +   4827813 ccataatttt-cagtcAGGCAACT-
s panTro5.chr6             29817480 23 + 175400573 ccataatttt-cagtcAGGCAACT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30052100 23 + 173848474 ccataatttt-cagtcAGGCAACT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5858607 23 +   6154872 ccataatttt-cagtcAGGCAACT-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74568324 23 + 122973662 ccataatttt-cagtcAGGCAACT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30049380 23 + 172585720 ccataatttt-cagtcAGGCAACT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29712227 23 - 170955103 ccataatttt-cagtcAGGCAACT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2757725 23 -   2996164 ccataatttt-cagtcAGGCAACT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     511128 23 +    766320 ccataatttt-cagtcAGGCAACT-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28967201 23 -  71996105 ccataatttt-cagtcAGGCAACT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     144163 23 +    290775 ccataatttt-cagtcAGGCAACT-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2604465 23 -   3067355 ccataatttt-cagtcAGACAACT-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30038913 23 + 171630274 ccataatttt-caCTAAGGCAACT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           187951 23 -    242197 tcatgatttt-cagtAAGGCAACT-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     180705 23 -   1771730 ccgtaagttt-cagtAAGGCAACT-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     255339 23 -    457564 ccataatttt-cagtAAGGCAACT-
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            68209 24 +  18854210 tgctggctttccagtcaggcaata-
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            12453 24 +    102524 cagtggcttc-cagttcggggacct
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                75399 41 + 123392446 I
e mm10.chr17               57902300 2610 -  94987271 I
e proCoq1.NW_012152574v1     570079 41 +    730504 I
e canFam3.chr35            26204801 768 +  26524999 I

a score=664743.000000
s hg38.chr6_GL000254v2_alt   854827 46 +   4827813 CTCAAATACACACTGTTGC--TTTCACACCATAATCAAATATCCCAGT-----
s panTro5.chr6             29817503 46 + 175400573 CTCAAATACACACTGTTGC--TTTCACACCATAATCAAATACCCCAGT-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30052123 46 + 173848474 CTCAAATACACACTGTTGC--TTTCACACCATAATCAAATACCCCAGT-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5858630 46 +   6154872 CTCAAATACACACTGTTGC--TTTCACACCATAATCAAATATCCCAGT-----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74568347 46 + 122973662 CTCAAATACACACTGTTGC--TTTCACACTATAATCAAATATCCCAGT-----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30049403 46 + 172585720 CTCAAATACACACTGTTGC--TTTCACACCATAATCAAATATCTCAGT-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29712250 46 - 170955103 CTCAAATACACACTGTTGC--TTTCACACCATAATCAAATATCTCAGT-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2757748 46 -   2996164 CTCAAATACACACTGTTGC--TTTCACACCATAATCAAATATCTCAGT-----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     511151 46 +    766320 CTCAAATACACACTGTTGC--TTTCACACCATAATCAAATATCTCAGT-----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28967224 46 -  71996105 CTCAAATACACACTGTTGC--TTTCACACCATAATCAAATATCTCAGT-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     144186 46 +    290775 CTCAAATACACACTGTTGC--TTTCACACCATAATCAAATATCTCAGT-----
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2604488 46 -   3067355 CTCAAATACACACTGTTGC--TTTCACACCATAATCAAATATCTCAGT-----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30038936 46 + 171630274 CTCAAAAACACACCGTTGC--TTTCACACCATAATCAAATATCCCAGT-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           187974 46 -    242197 CTCAAAAACACACCGTTGC--TTTCACACTGTAATCAAATGTCCCAGT-----
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     180728 48 -   1771730 CTCAAAAGCACACCATTGCTTTTTCACACCTGAATCAAATATCCCAGT-----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     255362 46 -    457564 CTCAAAAACACACCGTTGC--TTTCACACCATAATCAAATATCCCAGT-----
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                75440 46 + 123392446 ctcaaatacatgctgtTGC--CTTCACACTGTAATCAAATATCCCAGT-----
i micMur3.chr6             I 41 C 0
s proCoq1.NW_012152574v1     570120 46 +    730504 ctcAAATACACACTGTTGC--TTTCACATTGTAATCAAATATCCCAGT-----
i proCoq1.NW_012152574v1   I 41 I 41
s otoGar3.GL873550            68233 46 +  18854210 ctcAAATACATGCTGTTCT--TTTCACACCATAATCACATATCCCAGT-----
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            12477 51 +    102524 gacggaaacgcgctgctgc--tctAACACGGTGATCAAATACCTCGCGCCCTT
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57902300 2610 -  94987271 I
e canFam3.chr35            26204801 768 +  26524999 I

a score=28926.000000
s hg38.chr6_GL000254v2_alt   854873 2 +   4827813 AT
s panTro5.chr6             29817549 2 + 175400573 AT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30052169 2 + 173848474 AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5858676 2 +   6154872 AT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74568393 2 + 122973662 AT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30049449 2 + 172585720 AT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29712296 2 - 170955103 AT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2757794 2 -   2996164 AT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     511197 2 +    766320 AT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28967270 2 -  71996105 AT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     144232 2 +    290775 AT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2604534 2 -   3067355 AT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30038982 2 + 171630274 AT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           188020 2 -    242197 AT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     180776 2 -   1771730 AT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     255408 2 -    457564 AT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                75486 2 + 123392446 AT
i micMur3.chr6             C 0 I 22
s otoGar3.GL873550            68279 2 +  18854210 AT
i otoGar3.GL873550         C 0 I 1
s dasNov3.JH582591            12528 2 +    102524 AC
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57902300 2610 -  94987271 I
e proCoq1.NW_012152574v1     570166 41 +    730504 I
e canFam3.chr35            26204801 768 +  26524999 I

a score=86238.000000
s hg38.chr6_GL000254v2_alt   854875 9 +   4827813 TTCAGGCTT
s panTro5.chr6             29817551 9 + 175400573 TTCAGGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30052171 9 + 173848474 TTCAGGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5858678 9 +   6154872 TTCAGGCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74568395 9 + 122973662 TTCAGGCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30049451 9 + 172585720 TTCAGGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29712298 9 - 170955103 TTCAGGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2757796 9 -   2996164 TTCAGACTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     511199 9 +    766320 TTCAGGCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28967272 9 -  71996105 CTCAGGCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     144234 9 +    290775 TTCAGGCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2604536 9 -   3067355 TTCAGGTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30038984 9 + 171630274 TTTAAGCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           188022 9 -    242197 TTTAGGCTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     180778 9 -   1771730 TTTAGGCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     255410 8 -    457564 TTTAGGC-T
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            68282 9 +  18854210 TCTAGGTTT
i otoGar3.GL873550         I 1 I 12
s dasNov3.JH582591            12530 9 +    102524 GGCAAGCCA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                75488 22 + 123392446 I
e mm10.chr17               57902300 2610 -  94987271 I
e proCoq1.NW_012152574v1     570166 41 +    730504 I
e canFam3.chr35            26204801 768 +  26524999 I

a score=188071.000000
s hg38.chr6_GL000254v2_alt   854884 17 +   4827813 -----GAGCCTTACAAAGGAAA
s panTro5.chr6             29817560 17 + 175400573 -----GAGCCTTACAAAGGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30052180 17 + 173848474 -----GAGCCTTACAAAGGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5858687 17 +   6154872 -----GAGCCTTACAAAGGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74568404 17 + 122973662 -----GAGCCTTACAAAGGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30049460 17 + 172585720 -----GAGTCTTACAAAGGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29712307 17 - 170955103 -----GAGCCTTACAAAGGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2757805 17 -   2996164 -----GAGCCTTACAAAGGAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     511208 17 +    766320 -----GAGCCTTACAAAGGAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28967281 17 -  71996105 -----GTGCCTTACAAAGGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     144243 17 +    290775 -----GAGCCTTACAAAGGAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2604545 17 -   3067355 -----GAGCCTTACAAAGGAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30038993 17 + 171630274 -----AAGGCTTACAAAGAAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           188031 17 -    242197 -----AAGGCTTACAAAGAAAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     180787 17 -   1771730 -----AAGGCTTACAAAGAAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     255418 17 -    457564 -----AAGGCTTACAAAGAAAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                75510 17 + 123392446 -----GAGCCTTAGGAAGAAAG
i micMur3.chr6             I 22 C 0
s otoGar3.GL873550            68303 17 +  18854210 -----GAGCCTTAGGGAGAAAG
i otoGar3.GL873550         I 12 C 0
s dasNov3.JH582591            12539 22 +    102524 TGGCGTGGTTCTGGGACGAAAG
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57902300 2610 -  94987271 I
e proCoq1.NW_012152574v1     570166 41 +    730504 I
e canFam3.chr35            26204801 768 +  26524999 I

a score=609113.000000
s hg38.chr6_GL000254v2_alt   854901 50 +   4827813 C--------------------------TTAGCTTCTTCAGTCC---TATTTCTTCTCTTACAATGCCCACAAATCGCAG
s panTro5.chr6             29817577 50 + 175400573 C--------------------------TTAGCTTCTTCAGTCC---TATCTCTTCTCTTACAATGCCCACAAATCGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30052197 50 + 173848474 C--------------------------TTAGCTTCTTCAGTCC---TATCTCTTCTCTTACAATGCCCACAAATCGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5858704 50 +   6154872 C--------------------------TTAGCTTCTTCAGTCC---TATTTCTTCTCTTACAATGCCCACAAATCGCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74568421 50 + 122973662 C--------------------------TTAGCTTCTTCAGTCC---TATTTCTTCTTTTACAATGCCCACAAATCGCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30049477 76 + 172585720 TTTGTAGATTAGCTTTAATAATGTAAATTAGCTTCTTTAGTCC---TATTTCTTCTCTTACAATGCCCACAAATCGCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29712324 76 - 170955103 TTTGTAGATTAGCTTTAATAATGTAAATTAGCTTCTGTAGTCC---TATTTCTTCCCTTACAATGCCCACAAATCGCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2757822 76 -   2996164 TTTGTAGATTAGCTTTAATAATGTAAATTAGCTTCTTTAGTCC---TATTTCTTCCCTTACAATGCCCACAAATCGCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     511225 76 +    766320 TTTGTAGATTAGCTTTAATAATGTAAATTAGCTTCTTTAGTCC---TATTTCTTCCCTTACAATGCCCACAAATCGCAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28967298 76 -  71996105 TTTGTAGATTAGCTTTAATAATGTAAATTAGCTTCTTTAGTCC---TATTTCTTCCCTTACAATGCCCACAAATCGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     144260 76 +    290775 TTTGTAGATTAGCTTTAATAATGTAAATTAGCTTCTTTAGTCC---TATTTCTTCCCTTACAATGCCCACAAATCGCAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2604562 76 -   3067355 TTTGTAGATTAGCTTTAATAATGTAAATTAGATTCTTTAGTCC---TATTTCTTCCCTTACAACGCCCACAAATCGCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30039010 50 + 171630274 C--------------------------TTAGCCTCTTCAGTCT---CATTTCTTCTCTTACAATGCCCACAAATCACAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           188048 50 -    242197 C--------------------------TTGGCCTCTTCAGTCT---CATTTCTTCTCTTACAATGCCCACAAATTACAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     180804 50 -   1771730 C--------------------------TTAGCTTCTTCGGTCT---CATTTCTTCTCTTACAATGCCCACAAATCACAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     255435 50 -    457564 C--------------------------TTAGCCTCTTCAATCT---CATGTCTTCTCTTACAATGCCCACAAATCCCAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                75527 53 + 123392446 --------------------------CTTAACTCCTTCAGTCCTAGTATTTCTTCTCTTACAATGCCCACAAATTGCAG
i micMur3.chr6             C 0 I 1696
s proCoq1.NW_012152574v1     570207 53 +    730504 --------------------------CTTAACTTCTTCAGTCCCAATATTTCTTCTCTTACAATGCCCACAAATTGCAG
i proCoq1.NW_012152574v1   I 41 I 2274
s otoGar3.GL873550            68320 53 +  18854210 --------------------------ATGAACTTCTTCAGTCCTGGTGTTTCCCCTCTTACAATGCCTACCACCTGCAG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            12561 36 +    102524 --------------------------CTTAACTCCTCCAGTCC-----------------CAGCGCCTGCCCAGCGCAG
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57902300 2610 -  94987271 I
e canFam3.chr35            26204801 768 +  26524999 I

a score=1180367.000000
s hg38.chr6_GL000254v2_alt   854951 112 +   4827813 GTAAAGGAGCAGCCAAAAAGACACAAAAATATCTTCATGTTTAGGCTGGC------------ACATTGTGGACCTTGGTGTCATCTACCGGCCAAATATGGTATTGCATGTGACATCCCAGACT
s panTro5.chr6             29817627 112 + 175400573 GTAAAGGAGCAGCCAAAAAGACACAAAAATATCTTCATGTTTAGGCTGGC------------ACATTGTGGACCTTGGTGTCATCTACCGGCCAAATATGGTATTGCATGTGACATCCCAGACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30052247 112 + 173848474 GTAAAGGAGCAGCCAGAAAGACACAAAAATATCTTCATGTTTAGGCTGGC------------ACATTGTGGACCTTGGTGTCATCTACCGGCCAAATATGGTATTGCATGTGACATCCCAGACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5858754 112 +   6154872 GTAAAGGAGCAGCCAAAAAGACACAAAAATATCTTCATGTTTAGGCTGGC------------ACATTGTGGACCTTGGTGTCATCTACCGGCCAAATATGGTATTGCATGTGACATCCCAGACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74568471 112 + 122973662 GTAAAGGAGCAGCCAAAAAGACACAAAAATATCTTCTTGTTTAGGCTGGC------------ACATTGTGGACCTTGGTGTCATCTACCGGCCAAATATGGTATTGCATGTGACATCCCAGACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30049553 121 + 172585720 ATAAAGGATCAGCTAGAAAGACACAAAAATATCTTAATGTTTCCGCTGGC---ACAATTTCGACATTGTGGACCTTGGTGTCATCTACCGGCCAAATATGGTATTGCATGTGACATCCCAGACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29712400 121 - 170955103 GTAAAGGATCAGCTAGAAAGACACAAAAATATCTTAATGTTTCGGCTGGC---ATAATTTCGACATTGTGGACCTTGGTGTCATCTACCGGCCAAATATGGTATTGCATGTGACATCCCAGACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2757898 121 -   2996164 ATAAAGGATCAGCTAGAAAGACACAAAAATATCTTAATGTTTCGGCTGGC---ACAATTTCGACATTGTGGACCTTGGTGTCATCTACCGGCCAAATATGGTATTGCATGTGACATCCCAGACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     511301 121 +    766320 GTAAAGGATCAGCTAGAAAGACACAAAAATATCTTAATGTTTTGGCTGGC---ACAATTTCGACATTGTGGACCTTGGTGTCATCTACCGGCCAAATATGGTATTGCATGTGACATCCCAGACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28967374 121 -  71996105 GTAAAGGATCAGCTAGAAAGACACAAAAATATCTTAATGTTTAGGCTGGC---ACAATTTCGACATTGTGGACCTTGGTGTCATCTACCGGCCAAATATGGTATTGCATGTGACATCCCAGACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     144336 121 +    290775 GTAAAGGATCAGCTAGAAAGACACAAAAATATCTTAATGTTTTGGCTGGC---ACAATTTCGACATTGTGGACCTTGGTGTCATCTACCGGCCAAATATGGTATTGCATGTGACATCCCAGACT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2604638 121 -   3067355 GTAAAGGAGCAGCTAGAAAGACACAAAAATATCTTAATGTTTAGGCTGGC---ACAATTTCAACATTGTGGACCTTGGTGTCATCTACCGGCCAAATATGGTATTGCATGTGACATCCCAGACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30039060 117 + 171630274 ATAAAGGAGTGGCCAGAAAGACACAAAAATATCT---TGTTTAGGCTGGC---ACAA-TTCGACATTGTGGACTTTGGTGTCCTCTACTGGCCAAATATGATATTGCATGTGACATCCCACACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           188098 121 -    242197 ATAAAGGAGGAGCCAGAAAGACACAAAAATATCTTTATGTTTAGGCTGGC---GCAATTTCGACATTGTGGACTTTAGTGTCCTCTACTGGCCAAATGTGATATTGCATGTGACATCTCAGACT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     180854 121 -   1771730 ATAAAGGAGCGGCCAGAAAGACACAAAAATATCTTTATATTTAGGCTGGC---ACTATTTCGACGTTGTGGACTTTGGTGTCCTCTACTGGCCAAATATGATATTGCATGTGACATCCCAGACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     255485 115 -    457564 ATAAAGGAACGGCCAGAAAGACACAAAAATA------TGTTTAGGCTGGC---ACAATTTCGACATTGTGGACTTTGGTGTCCTCTACTGGCCAAATATGATATTGCAAGTGACATCCCAGACT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            68373  93 +  18854210 -------------------CTCACAAGGAGA------------GGCTGGCAGGACAATTTTGACATCGAGGACTTTGATGCCATCTACTGGCTAAATATGGGATCGCGTGTGGCGTCCCAGACT
i otoGar3.GL873550         C 0 I 2639
s dasNov3.JH582591            12597  76 +    102524 ------GAACAG-----------------------------------GGC---AACTTTAAGAC---GCGGGCTCTGGGGCCATCTACCGGCCCGCTGTGGCCTCGCGCCTGG-ATGCCAGGCG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57902300 2610 -  94987271 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26204801 768 +  26524999 I

a score=7642.000000
s hg38.chr6_GL000254v2_alt   855063 4 +   4827813 TCTG
s panTro5.chr6             29817739 4 + 175400573 TCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30052359 4 + 173848474 TCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5858866 4 +   6154872 TCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74568583 4 + 122973662 TCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30049674 4 + 172585720 TCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29712521 4 - 170955103 TCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2758019 4 -   2996164 TCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     511422 4 +    766320 TCTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28967495 4 -  71996105 TCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     144457 4 +    290775 TCTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2604759 4 -   3067355 TCTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30039177 1 + 171630274 T---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           188219 1 -    242197 T---
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     180975 1 -   1771730 T---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     255600 1 -    457564 T---
i aotNan1.NW_018509740v1   C 0 C 0
s dasNov3.JH582591            12673 4 +    102524 CCTG
i dasNov3.JH582591         C 0 I 242
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57902300 2610 -  94987271 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26204801 768 +  26524999 I
e otoGar3.GL873550            68466 2639 +  18854210 I

a score=1644546.000000
s hg38.chr6_GL000254v2_alt   855067 168 +   4827813 CTCCAGGGTCATCCGAACTGTACTTTGCTCAAAGACATAGATATGGTTATGATACTAT-AAGCATTTATGTAATTGTTATGTTAACCCAAGTAACACTTAAAGTAcagatgctccttgacttataatgatgttacctcccaaaaaacctatcatatactgaaaatattg
s panTro5.chr6             29817743 168 + 175400573 CTCCAGGGTCATCCGAACTGTACTTGGCTCAAAGACATAGATATTGTTATGATACTAT-AAGCATTTATGTAATTGTTATGTTAACCCAAGTAACACTTAAAGTAcagatgctccttgacttatgatgatgttacctcccgaaaaacctatcatatactgaaaatattg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30052363 168 + 173848474 CTCCAGGGTCATCCGAACTGTACTTGGCTCAAAGACATAGATATTGTTATGATACTAT-AAGCATTTATGTAATTGTTATGTTAACCCAAGTAACACTTAAAGTAcagatgctccttgacttatgatgatgttacctcccgaaaaacctatcatatactgaaaatattg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5858870 168 +   6154872 CTCCAGGGTCATCCGAACTGTACTTTGCTCAAAGACATAGATATTGTTATGATACTAT-AAGCATTTATGTAATTGTTATGTTAACCCAAGTAACACTTAAAGTAcagatgctccttgacttatgatgatgttacctcccgaaaaacctatcatatactgaaaatattg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74568587 169 + 122973662 CTCAAGGGTTATCCGAACTGTACTTTGCTCAAAGACATAGATATTGTTATGATACTATAAAGCATTTATGTAATTGTTATGTTAACCCAAGTACCACTTAAACTAcagatgctccttgactcatgatgatgttacctcccgaaaaacctatcatatactgaaaatattg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30049678 169 + 172585720 CTCCAGGGTCATCCGAACTGTACTTTGCTCAAAGACATAGGTATTGTTATGATACTACAAAGCATTTATGTAATCGTTATGATAACCCAAGTAACACTTAAAGAAcagatgctccttgacttatgatgatgttacctcccgataaacctatcatatactgaaaatattg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29712525 169 - 170955103 CTCCAGGGTCATCTGAACTGTACTTTGCTCAAAGACATAGGTATTGTTATGATACTACAAAGCATTTATGTAATCGTTATGATAACCCAAGTAACACTTAAAGAAcagatgctccttgacttatgatgatgttacctcccgataaacctatcatatactgaaaatattg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2758023 169 -   2996164 CTCCAGGGTCATCCGAACTGTACTTTGCTCAAAGACATAGGTATTGTTATGATACTACAAAGCATTTATGTAATCGTTATGATAACCCAAGTAACACTTAAAGAAcagatgctccttgacttatgatgatgttacctcccgataaacctatcatatactgaaaatattg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     511426 169 +    766320 CTCCAGGGTCATCCGAACTGTACTTTGCTCAAAGACATAGGTATTGTTATGATACTACAAagcatttatgtaatcgttatgataacccaagtaacacttaaagaacagatgctccttgacttatgatgatgttacctcccgataaacctatcatatactgaaaatattg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28967499 169 -  71996105 CTCCAGGGTCATCCGAACTGTACTTTGCTCAAAGACATAGGTATTGTTATGATACTATAAAGCATTTATGTAATCGTTATGATAACCCAAGTAACACTTAAAGAAcagatgctccttgacttatgatgatgttacctcccgataaacctatcatatactgaaaatattg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     144461 169 +    290775 CTCCAGGGTCATCCGAACTGTACTTTGCTCAAAGACATAGGTATTGTTATGATACTACAAAGCATTTATGTAATCGTTATGATAACCCAAGTAACACTTAAAGAAcagatgctccttgacttatgatgatgttacctcccgataaacctatcatatactgaaaatattg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2604763 169 -   3067355 CTCCAGGGTCATCCGAACTGTACTTTGCTCAAAGACATAGGTATTGTTATGATACTATAAAGCATTTATGTAATTGTTATGATAACCCAAGTAACACTTAAAGAACTgatgctccttgacttatgatgatgttacctcccgataaacctaccatatactgaaaatattg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30039178 166 + 171630274 ---CAGGGTCATCCAAACTGTACTTTGCTCAAAGAGATAGATACTGCTACAAAACTATAAAGCATTGATGTAATTGTTGCGATAACCCAAGTAACATTTAAAATGcagctgctccttgacttatggtgaggttacctcctgataaacctatcatatattgaaaatattg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           188220 166 -    242197 ---CAGGGTCATCCAAACTGTACTTTGCTCAAAAAGATGGATATTACTACAAAACTATAAAGCATTTATGTAATTGTTGTAATAACCCAAGTAACATTTAAAGTATagatgctccttgacttatggtgaggttgcctctcgataaacctatcatatattgaaaatattg
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     180976 167 -   1771730 CTCCAGGGTCATCCAAACTGTACTTTGCTC--AGAGACAGATATTGCTACAAAACTATAAAGCATTTATGTAATTGTTGTGATAACCCAAGTAACATTTAAAATAcagatgctccttgacttatggtgaggttacctcccgataaacgtatcatatattgaaaatattg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     255601 169 -    457564 CTCCGGGGTCATCCAAACTGTACTTGGCTCAAAGAGATAGATATTGCTACAAAACTATAAAGCATTTATGTAATTGTTGTGATAACCCAAGTAACATTTAAAGTATagatgctctttgatttatggtgaggttacctcccgataaacctatcatatattgaaaatattg
i aotNan1.NW_018509740v1   C 0 I 313
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57902300 2610 -  94987271 I
e dasNov3.JH582591            12677 242 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26204801 768 +  26524999 I
e otoGar3.GL873550            68466 2639 +  18854210 I

a score=2938132.000000
s hg38.chr6_GL000254v2_alt   855235 294 +   4827813 taagttgaatatgcatttcatacacctaacctaccaaacatcatagcttagcctagcctaccttaaacatactcagaacacttacattagcctacagttcagcaaaatcctcaatacaaagtctattttataataaagttttgaatatctcatgtaatttactgaatactgtactaaaagtgaaaaaacagaatggttatattggtactcaaagtacggtttctactgaatgtatctcttttgcattattataaagtcaaaaaatggtcaaagtcaggaaccCCCTgcaattta
s panTro5.chr6             29817911 292 + 175400573 taagttgaatatgcatttcatacacctaacctaccaaacatcatagcttagcctagcctaccttaaacatactcagaacacttacattagcctacagttcagcaaaatcctcaatacaaagtctattttataataaagttttgaatatctcatgtaatttactgaatactgtactgaaagtg-aaaaacagaatggttatattggtactcaaagtacggtttctactgaatgtatctcttttgcattattataaagtc-aaaaatggtcaaagtcaggaaccCCCTgcaattta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30052531 292 + 173848474 taagttgaatatgcatttcatacacctaacctaccaaacatcatagcttagcctagcctaccttaaacatactcagaacacttacattagcctacagttcagcaaaatcctcaatacaaagtctattttataataaagttttgaatatctcatgtaatttactgaatactgtactgaaagtg-aaaaacagaatggttatattggtactcaaagtacggtttctactgaatgtatctcttttgcattattataaagtc-aaaaatggtcaaagtcaggaaccCCCTgcaattta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5859038 293 +   6154872 taagttgaatatgcatttcatacacctaacctaccaaacatcatagcttagcctagcctaccttaaacatactcagaacacttacattagcctacagttcggcaaaatcctcaatacaaagtctattttataataaagttttgaatatctcatgtaatttactgaatactgtactgaaagtg-aaaaacagaacggttatattggtactcaaagtacagtttctactgaatgtatctcttttgcattattataaagtcaaaaaatggtcaaagtcaggaaccCCCTgcaattta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74568756 293 + 122973662 taagttgaatatgcatttcatacacctaacctaccaaacatcatagcttagcctagcctaccttaaacatactcagaacacttacattagcctacagttcagcaaaatcctcaatacaaagtctattttataatagagttttgaatatctcatgtaatttactgaatactgtactgaaagtg-aaaaacagaatggttatattggtactcaaggtacggtttctactgaatgtatctcttttgcattatcataaagtcaaaaaatggtcaaagtcaggaaccCCCTgcaattta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30049847 292 + 172585720 taagttgaatatgcatttcatacacctaacctatc-aacatcatagcttagcctcgcctaccttaaacatattcagaacacttacattagcctgcagttcagcaaaatcctcaacacaaagtctattttataataaagttttgaatagctcatgtaatttgctgaatactgtactgaaagtg-aaaaacagaatggttatattggtactcaaagtacggtttccactgaatgtacttcttttgcatcatcataaagtcaaaaaatggtcaaagtcaggaaccgcctgTAAttta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29712694 292 - 170955103 taagttgaatatgcatttcatacacctaacctatc-aacatcatagcttagcctcgcctaccttaaacatattcagaacacttacattagcctgcagttcagcaaaatcctcaacacaaagtctattttataataaagttttgaatagctcatgtaatttgctgaatactgtactgaaagtg-aaaaacagaatggttatattggtactcaaagtacggtttccactgaatgtacttcttttgcatcatcataaagtcaaaaaatggtcaaagtcaggaaccgcctgtaattta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2758192 292 -   2996164 taagttgaatatgcatttcatacacctaacctatc-aacatcatagtttagcctcgcctaccttaaacatattcagaacacttacattagcctgcagttcagcaaaatcctcaacacaaagtctattttataataaagttttgaatagctcatgtaatttgctgaatactgtactgaaagtg-aaaaacagaatggttatattggtactcaaagcacggtttccactgaatgtacttcttttgcatcatcataaagtcaaaaaatggtcaaagtcaggaaccgcctgTAAttta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     511595 292 +    766320 taagttgaatatgcatttcatacacctaacctatc-aacatcatagcttagcctcgtctaccttaaacatactcagaacacttacattagcctgcagttcagcaaaatcctcaacacaaagtctattttataataaagttttgaatagctcatgtaatttgctgaatactgtactgaaagtg-aaaaacagaatggttatattggtactcaaagtacggtttccactgaatgtacttcttttgcatcatcataaagtcaaaaaatggtcaaagtcaggaaccgcctgtaattta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28967668 292 -  71996105 taagttgaatatgcatttcatacacctaacctacc-aacatcatagcttagcctcgcctaccttaaacatactcagaacacttacattagtctgcagttcagcaaaatcctcaacacaaagtctattttataataaagttttgaatatctcatgtaatttgctgaatactgtactgaaagtg-aaaaacagaatggttatattggtactcaaagtgcggtttccactgaatgtacttcttttgcatcatcataaagtcaaaaaatggtcaaagtcaggaacTGCCTGTAAttta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     144630 292 +    290775 taagttgaatatgcatttcatacacctaacctatc-aacatcatagcttagcctcgtctaccttaaacatactcagaacacttacattagcctgcagttcagcaaaatcctcaacacaaagtctattttataataaagttttgaatagctcatgtaatttgctgaatactgtactgaaagtg-aaaaacagaatggttatattggtactcaaagtacagtatccactgaatgtacttcttttgcatcatcataaagtcaaaaaatggtcaaagtcaggaaccgcctgTAAttta
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2604932 293 -   3067355 taagttgaatatgcatttcatacatctaacctaccaaacatcatagcttagcctagcctaccttaaacatactcagaacacttacattagcctacagttcagcaaaatcctcaacacaaagtctattttataataaagttttgaatatctcatgtaatttgctgaatactgtactgaaaata-aaaaacagaatggttatattggtactcaaagtacggtttctactgaatgtacttcttttgcatcatcataaagtcaaaaaatggtcaaagtcaggaaccgcctgTAAttta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30039344 293 + 171630274 taagttgaatatgcatttcatacacctaacctaccgaacatcagagcttggcctagcttaccttaaacatgctcagaacacttacataagcctacagtccagcaaaatcctcaacacaaagtctattttataataaagttttaaatatcgcatgtaatttattaaatactgtactgaaagtg-aaaaaccgaatggttgtattggtactcaaagtacaatttctactgaatgcatctcttttgcatcatcatgaagtcaaaaaatggtccaagtcagaaaccatTTgcaattta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           188386 292 -    242197 taagttgaatatgcattttatacacctaacctaccaaacatcagagcttagcctagcttatcttaaacatgctcagaacattaacatgagcctacagttcagcaaaatcctcaacacaaagtctattttataatgaagttttgaatatctcatgtaatttattgaatactgcactgaaagtg-aaaaaccgaatggttatattggtactcaaa-tacaatttctactgaatgcatctcttttgcatcatcataaagtcaaaaaatggtcaaagtcaggaaccaccTgcaattta
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     181143 286 -   1771730 taagttgagtatgcatttcatacacctaacctaccaaacatcagagcttagcctagcttaccttaaacatgctcagaacactaacatgagcctacagttcagcaaaattctcaatacaaagtctattttataataaagttttgaatatctcatgtaatttattgaatactgtactgaaag-g-aaaaaccgaatggttatattggt----aaagtacaatttctactgaatgcatctc--ttgcatcatcataaagtcaaaaaatggtcaaagtcaggaaccacttgtaattta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     256083 293 -    457564 taagttgaatatgcattttatacacctaacctaccaaacatcagagcttagcctagcttaccttaaacatgctcagaacacttacatgagcctacagttcagcaaaatcctcaacacaaagtctattttataataaagttttgaatatctcatataatttatttaatactgtactgaaagtg-aaaaaccgaatggttatattggtactcaaagtacaatttctactgaatgcatctcttttgcatcatcataaagtcaaaaaatggtcaaagtcaggaaccaCTTgcaattta
i aotNan1.NW_018509740v1   I 313 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57902300 2610 -  94987271 I
e dasNov3.JH582591            12677 242 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26204801 768 +  26524999 I
e otoGar3.GL873550            68466 2639 +  18854210 I

a score=1441142.000000
s hg38.chr6_GL000254v2_alt   855529 150 +   4827813 cacatattgacttatttaacccttataacaacactatgaagcagataatattattatcctttttcagaggtaaaaactaaaacacagaatttatgttaccacttgcaaatgtgcaagacaggatttgaacccaggaaaactggctccaga
s panTro5.chr6             29818203 150 + 175400573 cacatattgacttatttaatccttataacaacactatgaagcagataatattattatcctttttcagaggtaaaaactaaaacacagaatttatgttaccacttgcaaatgtgcaagacaggatttgaacccaggaaaactggctccaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30052823 150 + 173848474 cacatattgacttatttaatccttataacaacactatgaagcagataatattattatcctttttcagaggtaaaaactaaaacacagaatttatgttaccacttgcaaatgtgcaagacaggatttgaacccaggaaaactggctccaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5859331 150 +   6154872 cacatattgactcatttaatccttataacgacactatgaagcagataatattattatcctttttcagaggtaaaaactaaaacacagaatttatgttaccacttgcaaatgtgcaagacaggatttgaacccaggaaaactggctccaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74569049 147 + 122973662 cacatattgactcatttaatccttataacaacactatgaagcagataatattatt---ctttttcaaaagtaaaaactaaaacacagaatttatgttaccacttgaaaatgtgcaagccaggatttgaacgcaggaaaactggctccaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30050139 150 + 172585720 cacatattgactcatttaatccttataacaacactatgaaacagataatattattattctttttcagaggtaaaaactaaaacacagaatttatgttaccaattgaaaatgtgcaagccaggatttgaacccaggaaaactggctccaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29712986 150 - 170955103 cacatattgactcatttaatccttataacaacactatgaaacagataatattattattctttttcagaggtaaaaactaaaacacagaatttatgttaccaattgaaaatgtgcaagccaggatttgaacccaggaaaactggctccaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2758484 150 -   2996164 cacatattgactcatttaatccttataacaacactatgaaacagataatattattattctttttcagaggtaaaaactaaaacacagaatttatgttaccaattgaaaatgtgcaagccaggatttgaacccaggaaaactggctccaga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     511887 150 +    766320 cacatattgactcatttaatccttataacaacactatgaaacagataatattattattctttttcagaggtaaaaactaaaacacagaatttatgttaccaattgaaaatgtgcaagccaggatttgaacccaggaaaactggctccaga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28967960 150 -  71996105 cacatattgactcatttaatccttataacaacactatgaagcagataatattattatcctttttcagaggtaaaaactaaaacacagaattcatgttaccaattgaaaatgtgcaagccaggatttgaacccaggaaaactggctccaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     144922 150 +    290775 cacatattgactcatttaatccttataacaacactatgaaacagataatattattattctttttcagaggtaaaaactaaaacacagaatttatgttaccaattgaaaatgtgcaagccaggatttgaacccaggaaaactggctccaga
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2605225 150 -   3067355 cacatactgactcatttaatccttacaacaccaccatgaaacagataatattattgtcctttttcagaggtaaaaactaaaacacagaatttatgttaccaattgaaaatgtacaagccaggatttgaacccaggaaacctggctccaga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30039637 145 + 171630274 cacaaattgactcatttaatccttgtaacaacactatgaagcagataatatcatc-----ctttctgaggcaaaaactaaaacacagaactgatgttgcagcttgaaattgtacaatccaggattttaacccaggaaaactggctctaga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           188678 145 -    242197 tgcaaattgactcatttaatccttgtaacaacactatgaagcagataatattatc-----ttttctgaggcaaaaactaaaacacagaatttatgttgtagcttgaaattgtgcaatccaggattttaacccaggaaaactagctccaga
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     181429 145 -   1771730 cacaaattgactcatttaatccttgtaacaacactatgaagcagataatattaac-----ctttctgaggcaaaaactaaaacatagaatttatgctgcagcttgaaattgtgcagtccaggattttaacccaggaaaactagctctaga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     256376 145 -    457564 cacaaattgactcatttaatccttgtaacaacactatgaagcagataatattatc-----ctttctgaggcaaaaactaaaacacagaatttatgttgcagcttgaaattgtgcaatccaggattttaacccaggaaaactggctgcaga
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26205569 125 +  26524999 CACATGCGGACTCATTGGATCCCTGT-----CACCAGGGAGCAGATCCT---------CTTTCCCAGATGCACCAGGTAAGACCCA-AGTTGAAGCAGCAGCTT---------TGGGTCAGTGATTTGTCCCCGGGAGGCTGCCTCAGG-
i canFam3.chr35            I 768 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57902300 2610 -  94987271 I
e dasNov3.JH582591            12677 242 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e otoGar3.GL873550            68466 2639 +  18854210 I

a score=575560.000000
s hg38.chr6_GL000254v2_alt   855679 53 +   4827813 ctccttgctc-ttaaccTTGCCTTTTGGTAAAAATAATGCCTCCCAGGCCCAGG
s panTro5.chr6             29818353 53 + 175400573 ctccttgctc-ttaaccTTGCCTTTTGGTAAAAATAATGCCTCCCAGGCCCAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30052973 53 + 173848474 ctccttgctc-ttaaccTTGCCTTTTGGTAAAAATAATGCCTCCCAGGCCCAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5859481 53 +   6154872 ctccttgctc-ttaaccTTGCCTTTTGGTAAAAATAATGCCTCCCAGGCCCAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74569196 53 + 122973662 ctctatgctc-ttaaccTTGCCTTTTGGTAAAAATAATGCCTCCCGAGCCCAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30050289 53 + 172585720 ctccatgctc-ttaaccTTGACTTTTGGTACAAATAATGCCTCCCGAGCCCAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29713136 53 - 170955103 ctccatgctc-ttaaccTTGCCTTTTGGTACAAATAATGCCTCCCGAGCCCAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2758634 53 -   2996164 ctccatgctc-ttaaccTTGCCTTTTGGTACAAATAATGCCTCCCGAGCCCAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     512037 53 +    766320 ctccacgctc-ttaaccTTGCCTTTTGGTACAAATAATGCCTCCCGAGCCCAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28968110 53 -  71996105 ctccatgctc-ttaaccTTGCCTTTTGGTACAAATAATGCCTCCCGAGCCCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     145072 53 +    290775 ctccatgctc-ttaaccTTGCCTTTTGGTACAAATAATGCCTCCCGAGCCCAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2605375 53 -   3067355 ctccatgctc-ttaaccTTGCCTTTTGGTAAAAATAATGCCTCCCGAGCCCAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30039782 53 + 171630274 ttccatgttc-tAAGTCCTGCCTTTTGGTACAAATAAGGCCCCCTGAGCCCAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           188823 53 -    242197 ctccatgctc-taagccCTGCCTTGTGGTACAAATAACGCCCCCTGAGCCCAGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     181574 53 -   1771730 ctccatgctc-taagccCTGCCTTGTGGTACAAATAATGCCCCCTGAGCCCAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     256521 53 -    457564 ctccatgctc-taagccCTGCCTTGTGGTACAAATAATGCCCCCTGAGTCCAGG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550         18783427 54 -  18854210 TCCTCTGCTCTTTAACACTGCCTTTTGGTGCAAATAATGTCTCCCCAGCCCAGG
i otoGar3.GL873550         n 2639 C 0
s canFam3.chr35            26205694 50 +  26524999 GTCTGTGCTC-TCA-CCCTGTCTTCTGGTTCAAAGA--GGCTTCTGCCGCCAGA
i canFam3.chr35            C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57902300 2610 -  94987271 I
e dasNov3.JH582591            12677 242 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I

a score=544040.000000
s hg38.chr6_GL000254v2_alt   855732 43 +   4827813 TGAAAAGCTTCAACTTCTCAACAAGCTTTGAGGAAAT-CATTTC
s panTro5.chr6             29818406 43 + 175400573 TGAAAAGCTTCAACTTCTCAACAAGCTTTGAGGAAAT-CATTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30053026 43 + 173848474 TGAAAAGCTTCAACTTCTCAACAAGCTTTGAGGAAAT-CATTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5859534 43 +   6154872 TGAAAAGCTTCAACTTCTCAACAAGCTTTGAGGAAAT-CATTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74569249 43 + 122973662 TGAAAAGCTTCAACTTCTCAACAAGCTTTGAAGAAAT-CATTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30050342 43 + 172585720 TGAAAAGCTTCAACTTCTCAACAAGCTTTGAGGAAAT-CATTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29713189 43 - 170955103 TGAAAAGCTTCAACTTCTCAACAAGCTTTGAGGAAAT-CATTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2758687 43 -   2996164 TGAAAAGCTTCAACTTCTCAACAAGCTTTGAGGAAAT-CATTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     512090 43 +    766320 TGAAAAGCTTCAACTTCTCAACAAGCTTTGAGGAAAT-CATTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28968163 43 -  71996105 TGAAAAGCTTCAACTTCTCAACAAGCTTTGAGGAAAT-CATTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     145125 43 +    290775 TGAAAAGCTTCAACTTCTCAACAAGCTTTGAGGAAAT-CATTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2605428 43 -   3067355 TGAAAAGCTTCAACTTCTCAACAAGCTTTGAGGAAAT-CATTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30039835 44 + 171630274 TGAGAAGCTTCAACTTCTCAACAAACTTTGAGGAAATCCTTTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           188876 43 -    242197 TGAGAAGCTTCAACTTCTCAACAAACTTTGAGGAAAT-CTTTTC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     181627 43 -   1771730 TGGGAAGATTCAACTTCTCAACAAACTTTGAGGAAAT-CCTTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     256574 43 -    457564 TGAGAAGCTTCAACTTCTCAACAAACTTTGAGGAAAT-CCTTTC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550         18783481 43 -  18854210 TGAGAAGTCTTAACTTCTCAACAAACTTTAAGGAACT-TGATTC
i otoGar3.GL873550         C 0 I 109
s canFam3.chr35            26205744 43 +  26524999 TCAGAAGTCTCAGCCTCTCAGTAAACTCTGAGGGAAT-CATCCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            12919 42 +    102524 TGGGCAGCCTCGACCTCTCAACAGGCGAGGAGGAAAC-CCTCC-
i dasNov3.JH582591         I 242 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57902300 2610 -  94987271 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I

a score=212687.000000
s hg38.chr6_GL000254v2_alt   855775 23 +   4827813 AATCTAAAACTATA----TCTAAA--------------TGA
s panTro5.chr6             29818449 23 + 175400573 AATCTAAAACTATA----TCTAAA--------------TGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30053069 23 + 173848474 AATCTAAAACTATA----TCTAAA--------------TGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5859577 23 +   6154872 AATCTAAAACTACA----TCTAAA--------------TGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74569292 23 + 122973662 AATCTAAAACTGTA----TCTAAA--------------TGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30050385 23 + 172585720 AATCTAAAACTATA----TCTAAA--------------TGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29713232 23 - 170955103 AATCTAAAACTATA----TCTAAA--------------TGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2758730 23 -   2996164 AATCTAAAACTATA----TCTAAA--------------TGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     512133 23 +    766320 AATCTAAAACTATA----TCTAAA--------------TGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28968206 23 -  71996105 AATCTAAAACTATA----TCTAAA--------------TGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     145168 23 +    290775 AATCTAAAACTATA----TCTAAA--------------TGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2605471 23 -   3067355 AATCTAAAACTATA----TCTAAA--------------TGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30039879 24 + 171630274 AATCTAGAACTACA----TCTAAC-------------TTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           188919 24 -    242197 AATCTAGAGCTACA----TCTAAC-------------TTGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     181670 24 -   1771730 AATCTAGAACTACA----TCTAAC-------------TTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     256617 24 -    457564 AATCTAGAACTACA----TCTAAC-------------TTGA
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26205787 37 +  26524999 AATCTAGAaataca----catggaatacacatggaatCTGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            12961 27 +    102524 AGCCTGAAA-TACAGCTGTCTAAC-------------CTGA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57902300 2610 -  94987271 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e otoGar3.GL873550         18783524 109 -  18854210 I

a score=2983635.000000
s hg38.chr6_GL000254v2_alt   855798 274 +   4827813 TCCCCCAGCTGAAGGGGTTTCACTTCCTTAAAATAAGAG-TTT-TTCAAATACTTCAAAGC-----------ATAAGAAACAACAGAACAATAAAACTTTTGGAAAAAGTTGTGTTACAGTTCATTGTGTGTGTGTTTCTGGCTTAGTTCACCCACTAG-ATTTCAGGCTCTCAGAAGGCAAGGACCAGAATTTTGC-ATAAAATTGGCACC----CAGTTTTATAAATGT----------------ATAAGtgaa--------tgaatgaatgaatgaatgaatCTTACTCTCCAAAGA----GAATATATAAAAGGTTC
s panTro5.chr6             29818472 274 + 175400573 TCCCCCAGCCGAAGGGGTTTCACTTCCTTAAAATAAGAG-TTT-TTCAAATACTTCAAAGC-----------ATAAGAAACAACAGAACAATAAAACTTTTGGAAAAAGTCGTGTTACAGTTCattgtgtgtgtgtttctggcttagttcacccactag-atttcaggctctcagaaggcaaggaccaGAATTTTGC-ATAAAATTGGCACC----CAGTTTTATAAATGT----------------GTAAGtgaa--------tgaatgaatgaatgaatgaatCTTACTCTCCAAAGA----GAATATATAAAAGGTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30053092 274 + 173848474 TCCCCCAGCCGAAGGGGTTTCACTTCCTTAAAATAAGAG-TTT-TTCAAATACTTCAAAGC-----------ATAAGAAACAACAGAACAATAAAACTTTTGGAAAAAGTCGTGTTACAGTTCattgtgtgtgtgtttctggcttagttcacccactag-atttcaggctctcagaaggcaaggaccaGAATTTTGC-ATAAAATTGGCACC----CAGTTTTATAAATGT----------------GTAAGtgaa--------tgaatgaatgaatgaatgaatCTTACTCTCCAAAGA----GAATATATAAAAGGTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5859600 274 +   6154872 TCCCCCGGCCGAAGGGGTTTCACTTCCTTAAAATAAGAG-TTT-TTCAAATACTTCAAAGC-----------ATAAGAAACAACAGAACAATAAAACTTTTGGAAAAAGttgtgttacagttcattgtgtgtgtgtttctggcttagttcacccactag-atttcaggctctcagaaggaaaggaccaGAATTTTGC-ATAAAATTGGCACC----CAGTTTTATAAATGT----------------ATAAGtgaa--------tgaatgaatgaatgaatgaatCTTACTCTCCAAAGA----GAATATATAAAAGGTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74569315 275 + 122973662 TCCCCCAGCCAAAGGGGTTTTGCTTCCTTAAAATAAGAG-TTT-TACAAATACTTCAAAGC-----------ATAAGAAACAATAGTACAATAAAACTTTTGGAAAAAGTTGTGTTACAGTTCattgtgtgtgtgtttctggcttagttcacccactag-atttcaggctctcagaaggcaaggaccagaattttgcaaaaaaattggcacc----cagttttataaatgt----------------ataaatgaa--------cgaatgaatGAATGAATGAATCCTACTCTCCAAAGA----GAATATATAAAAGGTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30050408 290 + 172585720 TCCCCCAGCCGAAGGGGTTTTGCTTCCTTAAAATAAGAG-TTT-TTCAAATACTTCAAAGC-----------ATAAGAAACAATAGAACAATAAAACTTTTGGAAAAAGTTGTGTTACAGTTCattgtgtatgtgtttctggcttagttcacccactag-atttcaggctctcagaaggcaaggaccaGAATTTTGC-ATAAAACTGGCACC----CAGTTTTATAaatgtatgaatgaatgaatgaatgaatgaa--------tgaatgaatgaatgaatgaatCCTACTCTCCAAAGA----GAATATCTAAAAGGTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29713255 290 - 170955103 TCCCCCAGCCGAAGGGGTTTTGCTTCCTTAAAATAAGAG-TTT-TTCAAATACTTCAAAGC-----------ATAAGAAACAATAGAACAATAAAACTTTTGGAAAAAGTTGTGTTACAGTTCATTGTGTATGTGTTTCTGGCTTAGTTCACCCACTAG-ATTTCAGGCTCTCAGAAGGCAAGGACCAGAATTTTGC-ATAAAACTGGCACC----CAGTTTTATAaatgtatgaatgaatgaatgaatgaatgaa--------tgaatgaatgaatgaatgaatCCTACTCTCCAAAGA----GAATATCTAAAAGGTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2758753 270 -   2996164 TCCCCCAGCCGAAGGGGTTTTGCTTCCTTAAAATAAGAG-ATT-TTCAAATACTTCAAAGC-----------ATAAGAAACAATAGAACAATAAAACTTTTGGAAAAAGTTGTGTTACAGTTCattgtgtatgtgtttctggcttagttcacccactag-atttcaggctctcagaaggcaaggaccaGAATTTTGC-ATAAAACTGGCACC----CAGTTTTATAaatgt--------------------atgaa--------tgaatgaatgaatgaatgaatCCTACTCTCCAAAGA----GAATATCTAAAAGGTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     512156 286 +    766320 TCCCCCAGCCGAAGGGGTTTTGCTTCCTTAAAATAAGAG-TTT-TTCAAATACTTCAAAGC-----------ATAAGAAACAATAGAACAATAAAACTTTTGGAAAAAGttgtgttacagttcattgtgtatgtgtttctggcttagttcacccactag-atttcaggctctcagaaggcaaggaccaGAATTTTGC-ATAAAACTGGCACC----CAGTTTTATAaatgt----atgaatgaatgaatgaatgaa--------tgaatgaatgaatgaatgaatCCTACTCTCCAAAGA----GAATATCTAAAAGGTTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28968229 294 -  71996105 TCCCCCAGCCGAAGGGGTTTTGCTTCCTTAAAATAAGAG-TTT-TTCAAATACTTCAAAGC-----------ATAAGAAACAATAAAACAATAAAACTTTTGGAAAAAGTTGTGTTACAGTTCATTGTGTATGTGTTTCTGGCTTAGTTCACCCACTAG-ATTTCAGGCTCTCAGAAGGCAAGGACCAGAATTTTGC-ATAAAACTGGCACC----CAGTTTTATAaatgt----atgaatgaatgaatgaatgaatgaatgagtgaatgaatgaatgaatgaatCCTACTCTCCAAAGA----GAATATCTAAAAGGTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     145191 286 +    290775 TCCCCCAGCCGAAGGGGTTTTGCTTCCTTAAAATAAGAG-TTT-TTCAAATACTTCAAAGC-----------ATAAGAAACAATAGAACAATAAAACTTTTGGAAAAAGTTGTGTTACAGTTCattgtgtatgtgtttctggcttagttcacccactag-atttcaggctctcagaaggcaaagaccaGAATTTTGC-ATAAAACTGGCACC----CAGTTTTATAaatgt----atgaatgaatgaatgaatgaa--------tgaatgaatgaatgaatgaatCCTACTCTCCAAAGA----GAATATCTAAAAGGTTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2605494 266 -   3067355 TCCCCCAGACGAAGGGGTTTTGCTTCCTTAAAATAAGAG-TTT-TTCAAATACTTCAAAGC-----------ATAAGAAACAATAGAACAATAAAACTTTGGGAAAAAGTTGTGTTACAGTTCATTGTGTGTgtgtttctggcttagttcacccactag-atttcaggctctcagaaggcaaggactaGAATTTTGC-ATAAAACTGGCACC----CAGTTTTataaatgt------------------------a--------tgaatgaatgaatgaatgaatCTTACTCTCCAAAGA----GAATATCTAAAGGGTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30039903 276 + 171630274 TCCCCCAGTCAAAGGGGTTTTGCTTCCTTAAAATATGAG-TTT-TTAAAATATTTCCAAGCATTTCATGAAAATAAGAAACAATAGAACAATAAAACTTTTAGAAAAAGTTTTGTTACAGTTCattgtatgtgtgtttctggattagttcacctactag-atttcaagctcccagaaggcaaggaccAGAATTTTGC-AT-AAATTGGCAGC----TAGTTTTataaatgt------------------------a--------taaatgaataaatgaatgaatCTTACTCTCCAAAAA----GAATATATAAAAGGTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           188943 276 -    242197 TCCCCCAGTTGAAGGGGTTTTGCTTCCTTAAAACATGAG-TTT-TTAAAATACTTCCAAGCATTTCATGAAAATAAGAAACAATAGAACAATAAAATTTTTAGAAAAACTTTTGTTGCCGTTCATTCTATGTGTGTTTCTGGATTAGTTCACCTACTAG-ATTTCAAGCTCCCAGAAGGCAAGGACCAGAATTTTGC-AT-AAATTGGCAAC----CAGTTTTataaatgt------------------------a--------taaatgaataaatgaatgaatCTTACTCTCCAAAAA----GAATATATAAAAGGTTC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     181694 268 -   1771730 TCCCCCAGTTGAAGGGGTTTTGCTTCCTTAAAATATGAG-TTT-TTAAAATACTTCCAAGCATTTCATGAAAATAAGAAACAATAGAACAATAAAACTTTTAGAAAAAGTTTTGTTACAGTTCattgtatgtgtgtttctggattagttcacctactag-atttcaagctcccagaaggcaaggaccaGAATTTTGC-AT-AAATTGGCAAC----CAGTTT--------T------------------------a--------taaatgaattaatgaatgaatCTTACTCTCCAAAAA----GAATATATAAAAGGTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     256641 274 -    457564 TCCCCCAGTCGAAGGGGTTTTGCTTCCTTAAAATGTGAG-TTT-TTAAAATACTTCCAAGCATTTCATGAAAATAAGAAACAATAGAACAATAAAACTTTTAG--AAAGTTTTGTTACAGTTCattgtatgtgtgtttctggattagttcacccactag-atttcaagctcccagaaggcaaggaccaGAATTTTGC-AT-AAATTGGCAAC----CAGTTTTataaatgt------------------------a--------taaatgaataaatgaatgaatCTTACTCTCCAAAAA----GAATATATAAAAGGTTC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550         18783633 260 -  18854210 gcccCCAGCTGAA---GTTTTTCTTCCCTGGAAGAAGAGTTTT-TTCAAGTATTTCAAAGAATTTCATAGGAATAAGAAACAATAGAACAAGAAACCTCTTGGGAAAAGTTTTGTTATAGTTTATTGTGTA--TGTTTCTGGTTTAGTTCCCCGACTAGAACACCAGGCCCCCAGGAGACAAGAGCCAGAATTTTGC-AGAAAATTAGCACT----CGATTTTACA----T------------------------A--------TGAGTGAATGAATGAATGACTCTTATTC--------------ATAGATAAAAGGGTC
i otoGar3.GL873550         I 109 I 46
s canFam3.chr35            26205824 264 +  26524999 GTGTCCATGTGAGGGTGTC---CTTCCTGGGAATCAGAC-TTCATCCAAAGAATCCCACGT---------GATCAAGAAACAGC---------AACTGCTTGGAAGAAGTCTTCTTCTAGC---TTCTGGCTGTGCTCCTGGCTTTGATCCTCCACTAG-TTTTCAGGCTCCCAGGAGGCAAGGACCGAAATGGTGC-CAAAAACTGGCACCAAATTAATTCTatgaatga----------------atgaatgaa--------tgaatgaatgaatgaatgaacgaatCTCTCCAA--A----GCATGTGTAAAGCATTC
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            12988 242 +    102524 TCGCCCGCCGGAGGAGCGTTTGCTGCCCTGGAAGAAGAG-CAT-GTCAAGTGCTTCCAAGC--CCCCTCGGAATGAGAAACACTGGC--------CTTCCTGGAG-----CTTGTCACAGTGCCCTGTG---------------------AGCCCCATG-ATTTCAGACTACCAGAGGGCGAGGACGAGCGGTCCGC-AGAGAATGGGCAGG----GAACGCTgtgaatga--------------------gtgag--------tgagtgaatgaatgagtgaATATCACTCCCCAGAGAATGCGGAGCTATGC-------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57902300 2610 -  94987271 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I

a score=238343.000000
s hg38.chr6_GL000254v2_alt   856072 21 +   4827813 -TGGGGTTCCAATCCCACATAC
s panTro5.chr6             29818746 21 + 175400573 -TGGGGTTCCGATCCCACATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30053366 21 + 173848474 -TGGGGTTCCGATCCCACATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5859874 21 +   6154872 -TGGGGTTCCAATCCCACATAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74569590 21 + 122973662 -TGGGGTTCCAATCCCACATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30050698 21 + 172585720 -TGGGGTTCTAATCCCACAGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29713545 21 - 170955103 -TGGGGTTCTAATCCCACAGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2759023 21 -   2996164 -TGGGGTTCTAATCCCACAGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     512442 21 +    766320 -TGGGGTTCCAATCCCACAGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28968523 21 -  71996105 -TGGGGTTCCAATCCCACAGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     145477 21 +    290775 -TGGGGTTCCAATCCCACAGAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2605760 21 -   3067355 -TGGGGTTCCAATCCCACAGAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30040179 21 + 171630274 -TGGGGTTCCAATCCCACAGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           189219 21 -    242197 -TGGGGTTCCAATCCCACAGAC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     181962 21 -   1771730 -AGGGGTTCCAATCCCACAGAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     256915 21 -    457564 -TGGGGTTCCAATCCCACAGAC
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26206089 21 +  26524999 -GGGGGTCCTGACCACACAGAT
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            13230 22 +    102524 TGGGCGTCCTAGGCCCACAGCT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57902300 2610 -  94987271 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e otoGar3.GL873550         18783893 46 -  18854210 I

a score=610934.000000
s hg38.chr6_GL000254v2_alt   856093 47 +   4827813 GCTGTC-TCCCAGCTTTTC---CCTGGCAAGGGCAGCAATACCAAATTCCC
s panTro5.chr6             29818767 47 + 175400573 GCTGTC-TCCCAGCTTTTC---CCTGGCAAGGGCAGCAATACCAAATTCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30053387 47 + 173848474 GCTGTC-TCCCAGCTTTTC---CCTGGCAAGGGCAGCAATACCAAATTCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5859895 47 +   6154872 GCTGCC-TCCCAGCTTTTC---CCTGGCAAGGGCAGCAATACCAAATTCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74569611 47 + 122973662 GCTGTT-TCCCAGCTTTTC---CCTGGCAAGGGCAGCAATACCAAATTCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30050719 47 + 172585720 GCTGTC-TCCCAGCTTTTC---CCTGGCAAGGGCAGCAATACCAAATTCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29713566 47 - 170955103 GCTGTC-TCCCAGCTTTTC---CCTGGCAAGGGCAGCAATACCAAATTCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2759044 47 -   2996164 GCTGTC-TCCCAGCTTTTC---CCTGGCAAGGGCAGCAATACCAAATTCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     512463 47 +    766320 GCTGTC-TCCCAGCTTTTC---CCTGGCAAGGGCAGCAATACCAAATTCCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28968544 47 -  71996105 GCTGTC-TCCCAGCTTTTC---CCTGGCAAGGGCAGCAATACCAAATTCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     145498 47 +    290775 GCTGTC-TCCCAGCTTTTC---CCTGGCAAGGGCAGCAATACCAAATTCCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2605781 47 -   3067355 GCTGTC-TCCCAGCTTTTC---CCTGGCAAGGGCAGCAATACCAAATTCCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30040200 47 + 171630274 ACTGTC-TCCCAGCTTTCC---CTTGGTAAGGGCAGCAATACCAAATTCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           189240 47 -    242197 ACTGTC-CCCCAGCTTTTC---CCTGGCAAGGGCAGCAATAACAAATTCCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     181983 47 -   1771730 ACTGTC-TCCCAGCTTTTC---CCTGGCAAGGGCAGCAATACCAAATTCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     256936 47 -    457564 ACTGTC-TCCCAGCTTTTC---CCTGGCAAGGGCAGCAATACCAAATTCCC
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57904910 51 -  94987271 gctgccatacctgctcctcacaCCTGTTAAACTTAGCAATACCAAACTCCC
i mm10.chr17               I 2610 C 0
s canFam3.chr35            26206110 44 +  26524999 GCTGTC-TCTCGGCTTTTT---CACGGCAATG---ACAACACCAAATTCTC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            13252 47 +    102524 GCTGTT-TCCTAGCTGTCC---CACAGTCTTTGCAGTGACACCAAGCTCTC
i dasNov3.JH582591         C 0 I 32
e micMur3.chr6                75580 1696 + 123392446 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e otoGar3.GL873550         18783893 46 -  18854210 I

a score=2615057.000000
s hg38.chr6_GL000254v2_alt   856140 246 +   4827813 TTTTGAGTAC-ACGCCGATAAAATAAGAAAAAGGAA-AATCTTAGTTTTATTTCTAGTTCCAACATAAAATGATTTTGATTCAACATTTATCCTGGCATCAGCACAGAACAGCAACATTAA-TTCTATTATAATCCTAATCTTTATCCTAGCCATCCTTGTGT--TAATCTTATTGTCTCCTTGACCTCGTTATTAGAGCATATTCTAATCTTAATGTAGAGCCCCCATT--TTATATTTAataatcctaatc-----------
s panTro5.chr6             29818814 246 + 175400573 TTTTGAGTAC-ACGCCGATAAAATAAGAAAAAGGAA-AATCTTAGTTTTATTTCTAGTTCCAACATAAAATGATTTTGATTCAACATTTATCCTGGCATCAGCACAGAACAGCAACATTAA-TTCTATTATAATCCTAATCTTTATCCTAGCCATCCTTGTGT--TAATCTTATTGTCTCCTTGACCTCGTTATTAGAGCATATTCTAATCTTAATGTAGAACCCCCATT--TTATATTTAATAATCCTAATC-----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30053434 246 + 173848474 TTTTGAGTAC-ACGCCGATAAAATAAGAAAAAGGAA-AATCTTAGTTTTATTTCTAGTTCCAACATAAAATGATTTTGATTCAACATTTATCCTGGCATCAGCACAGAACAGCAACATTAA-TTCTATTATAATCCTAATCTTTATCCTAGCCATCCTTGTGT--TAATCTTATTGTCTCCTTGACCTCGTTATTAGAGCATATTCTAATCTTAATGTAGAACCCCCATT--TTATATTTAATAATCCTAATC-----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5859942 246 +   6154872 TTTTGAGTAC-ACGCCGATAAAATAAGAAAAAGGAA-AATCTTAGTTTTATTTCTAGTTCCAATATAAAATGATTTTGATTCAACATTTATCCTGGCATCAGCACAGAACAGCAACATtaa-ttctattataatcctaatctttatcctagtcATCCTTGTGT--TAATCTTATTGTCTCCTTGACCTCGTTATTAGAGCATATTCTAATCTTAATGTAGATTCCCCATT--TTATATTTAataatcctaatc-----------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74569658 230 + 122973662 TTTTGAGTAC-ACGCTGATAAAATAAGAAAAAGGAA-----------------CTAGTTCCAACATAAAATGATTTTGATTCAACATTTATCCTGGCATCAGCACAGAACAGCAACATTAA-TTCTATTAtaatcctaatctttatcctagccatccttgtgt--taatcttattgtctccttgacctcattattagagcatatcctaatcttaatgtggagcccccatt--ttatatttaataatcctaatc-----------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30050766 242 + 172585720 -TTTGAGTAC-ACACTGATAAAATAAGAAAAAGGAA-AATCTTAGTTTTATTTCTAGTTCCAACATAAAATGATTTTGATTCAACATTTAGCCTGGCATTGGCACAGAACAACAATATTAA-TTCTTTTATAATCCTAATCTTTATCCTAGCCATCCTTGTGT--TAATCTTATTGTCTCCTTGACCTC---ATTAGAGCATATCCTAATCTTAATGTAGAGCCCCCATT--TTATATTTAATAATCCTAATC-----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29713613 242 - 170955103 -TTTGAGTAC-ACACTGATAAAATAAGAAAAAGGAA-AATCTTAGTTTTATTTCTAGTTCCAACATAAAATGATTTTGATTCAACATTTAGCCTGGCATTGGCACAGAACAACAATATTAA-TTCTTTTATAATCCTAATCTTTATCCTAGCCATCCTTGTGT--TAATCTTATTGTCTCCTTGACCTC---ATTAGAGCATATCCTAATCTTAATGTAGAGCCCCCATT--TTATATTTAATAATCCTAATC-----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2759091 242 -   2996164 -TTTGAGTAC-ACACTGATAAAATAAGAAAAAGGAA-AATCTTAGTTTTATTTCTAGTTCCAACATAAAATGATTTTGATTCAACATTTAGCCTGGCATTGGCACAGAACAACAATATTAA-TTCTTTTATAATCCTAATCTTTATCCTAGCCATCCTTGTGT--TAATCTTATTGTCTCCTTGACCTC---ATTAGAGCATATCCTAATCTTAATGTAGAGCCCCCATT--TTATATTTAATAATCCTAATC-----------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     512510 242 +    766320 -TTTGAGTAC-ACACTGATAAAATAAGAAAAAGGAA-AATCTTAGTTTTATTTCTAGTTCCAACATAAAATGATTTTGATTCAACATTTAGCCTGGCATTGGCACAGAACAACAATATTAA-TTCTTTTATAATCCTAATCTTTATCCTAGCCATCCTTGTGT--TAATCTTATTGTCTCCTTGACCTC---ATTAGAGCATATCCTAATCTTAATGTAGAGCCCCCATT--TTATATTTAATAATCTTAATC-----------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28968591 242 -  71996105 -TTTGAGTAC-ACACTGATAAAATAAGAAAAAGGAA-AATCTTAGTTTTATTTCTAGTTCCAACATAAAATGATTTTGATTCAACATTTACCCTGGCATTGGCACAGAACAACAATATTAA-TTCTTTTATAATCCTAATCTTTATCCTAGCCATCCTTGTGT--TAATCTTATTGTCTCCTTGACCTC---ATTAGAGCATATCCTAATCTTAATGTAGAGCCCCCATT--TTATATTTAATAATCCTAATC-----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     145545 242 +    290775 -TTTGAGTAC-ACACTGATAAAATAAGAAAAAGGAA-AATCTTAGTTTTATTTCTAGTTCCAACATAAAATGATTTTGATTCAACATTTAGCCTGGCATTGGCACAGAACAACAATATTAA-TTCTTTTATAATCCTAATCTTTATCCTAGCCATCCTTGTGT--TAATCTTACTGTCTCCTTGACCTC---ATTAGAGCATATCCTAATCTTAATGTAGAGCCCCCATT--TTATATTTAAtaatcctaatc-----------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2605828 242 -   3067355 -TTTGAGTAC-ACACTGATAAAATAAGAAAAAGGAA-AATCTTAGTTTTATTTCTAGTTCCAACATAAAATGATTTTGATTCAACATTTACCCTGGCATTAGCACAGAACAACAACATTAA-TTCTTTTATAATCTTAATCTTTATCCTAGCCATCCTTGTGT--TAATCTTATTGTCTCCTTGACCTC---ATTAGAGCATATCCTAATCTTAATGTAGAGCCCCCATT--TTATATTTAATAATCCTAATC-----------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30040247 245 + 171630274 -TTTGAGTAC-ATGCTGATAAAATAGTAAGAAGAAA-AATCTTCGTTTTAGTTCTAGTTCCAATGTAAAATGATTTTGATTCAACATTTACCCTGGCATCAGCACAGAACAGCAACATGAA-TTCTATTATAACCCTAATCTTTATCCTAGCCATCCTTGTGC--TGATCTTATTGTCTCCTTGACCTCATTATTAAAGCATATCCTAATCTTAATGTAGAGCCCCTATT--TTACATTTAATAATCCGAATC-----------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           189287 245 -    242197 -TTTGAGTAC-ATGCTGATAAAATAATAAGAAGAAA-AATCTTAGTCTTAATTCTAGTTCCAATGTAAAATGATTTTGATTCAACATTTACCCTAGCATCAGCACAGAACAGCAACATGAA-TTCTATTATAATCCTAATCTTTATCCTAGCCATCCTTGTGC--TAATCTTATTGTCTCCTTGACCTCATTATTAGAGCATATCCTAATCTTAATGTAGAGCCCCTATT--TTACATTTAATAATCTGAATC-----------
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     182030 245 -   1771730 -TTTGAGTAC-ATGCTGATAAAATAATAAGAAGAAA-AATCTTAGTTTTAGTTCTAGTTCCAATGTAAAATGATTTTGATTCAACATTTACCCTGGCATCAGCACAGAACAGCCAAATGAA-TTCTATTATAATCCTAATCTTTATCCTAGCCATCCTTGTGC--TAATCTTATTGTCTCCTTGACCTCATTATTAGAGCATATCCTAATCTTAATGTAGAGCCCCTATT--TTACATTTAATAATCCGAATC-----------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     256983 245 -    457564 -CTTGAGTAC-ATGCTGATAAAACAAGAAGAAGAAA-AATCTTAGTTTTAGTTCTAGTTCCAATGTAAAATGATTTTGATTCAACATTTACCCTGGCATCAGCACAGAACAGCAACATGAA-TTCTATTATAATCCTAATCTTTATCCTAGCCATCCTTGTGC--TAATCTTATTGTCTCCTTGACCTCATTATTAGAGCATATCCTAATCTTAATGTAGAGCCCCTATT--TTACATTTAAtaatccgaatc-----------
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57904961 212 -  94987271 -TTTGGGCACAATACCAGTGAAGGAAGAAAAGGGAA--ATCCTAGTTTCATTTCTACTTCAAGTA---------------TTAACACGTACTCTGGCATCAGCCCAGAGTGTCAGTGTTAAGCTCTATCTCAACCTTAATCACCACTGCAGCCATAGT---------------ATGTCTCTTCAGCTACAT-TTTGGGGC-------TGTCCTAATGCAGGGCATCTTCCAGTTGTATTGAGTAACCCTAATC-----------
i mm10.chr17               C 0 I 1337
s canFam3.chr35            26206154 246 +  26524999 -TCTGA-TAC-GTGCTGATGAAATATGAAAAAGGAAAAATCCTACTTTTA-TTCTAGTCCCAACAC-AAATGGCTTTGGCTGAAGATTGTCCCT-GCATCTGCTCACAACAGC-ACATTGA-CTGTGTTC--ACCCCAATCTTT---CCAGTCATCCATGTACTGTAATGTCAGTATCTCCTCAGCCTCCT-ATTAGACTATGTCCTGATCTTACTGTAGATCCCCCATC--TGGTGTT-AAT-ACCCTCATCTCATCCCTACA
i canFam3.chr35            C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e dasNov3.JH582591            13299  32 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e otoGar3.GL873550         18783893  46 -  18854210 I

a score=184720.000000
s hg38.chr6_GL000254v2_alt   856386 22 +   4827813 agtcaggcgcagtggctcacac
s panTro5.chr6             29819060 22 + 175400573 Agtcaggcgcagtggctcacac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30053680 22 + 173848474 Agtcaggcgcagtggctcacac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5860188 22 +   6154872 agtcaggcgcagtggctcacac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74569888 22 + 122973662 agtcgggcgcagtggctcacac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30051008 22 + 172585720 Agccaggcacggtggctcacgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29713855 22 - 170955103 Agccaggcacggtggctcacgc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2759333 22 -   2996164 Agccaggcacggtggctcacgc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     512752 22 +    766320 Agccaggcacggtggctcacgc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28968833 22 -  71996105 ATccaggcacagtggctcacgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     145787 22 +    290775 agccaggcacggtggctcacgc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2606070 22 -   3067355 Agccaggcatggtggctcacgc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30040492 22 + 171630274 ATccaggcatagtggcttatgc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           189532 22 -    242197 ATccaggcacaggggctcatgc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     182275 22 -   1771730 GTccaggcacagtggctcaagc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     257228 22 -    457564 gtccaggcacagtggctcatgc
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26206400 11 +  26524999 CGTCATGCGAA-----------
i canFam3.chr35            C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57905173 1337 -  94987271 I
e dasNov3.JH582591            13299 32 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e otoGar3.GL873550         18783893 46 -  18854210 I

a score=114071.000000
s hg38.chr6_GL000254v2_alt   856408 13 +   4827813 ctataatccca-gc
s panTro5.chr6             29819082 13 + 175400573 ctataatccca-gc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30053702 13 + 173848474 ctataatccca-gc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5860210 13 +   6154872 ctataatccca-gc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74569910 13 + 122973662 ctataatccca-gc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30051030 14 + 172585720 ctataatcctataa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29713877 14 - 170955103 ctataatcctataa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2759355 14 -   2996164 ctataatcctataa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     512774 14 +    766320 ctataatcctataa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28968855 13 -  71996105 ctataatccca-gt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     145809 14 +    290775 ctataatcctataa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2606092 13 -   3067355 ctataatccca-gt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30040514 13 + 171630274 ctgtaatccca-gc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           189554 13 -    242197 ctgtaatccca-gc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     182297 13 -   1771730 ttgtaatccca-gc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     257250 13 -    457564 ctgtaatccca-gc
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550         18783939 13 -  18854210 ctgtaatccta-gc
i otoGar3.GL873550         I 46 C 0
s canFam3.chr35            26206411 13 +  26524999 CTCTAATCCCA-GC
i canFam3.chr35            C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57905173 1337 -  94987271 I
e dasNov3.JH582591            13299 32 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I

a score=2129175.000000
s hg38.chr6_GL000254v2_alt   856421 244 +   4827813 actttaggaggccaaggcgggcggatcac--gaggtcaggagttcgagaccagcctgaccaacat---ggtgaaaccctgtctctactaaaaatac----aaaaaaa-------------a-aactagcc--tggcgtggtggcgtgctcctgtaatcccagctacttaggaggctaaggcagga---------gaacctgggaggcggaggttgcagtgagccgagatcatgccactgcactccagccagggcgacacagtgagactctatctcaa-------a-
s panTro5.chr6             29819095 242 + 175400573 actttaggaggccaaggtgggcggatcac--gaggtcaggagttcgagaccagcctgaccaacat---ggtgaaaccccatctctactaaaaacac-----acaaaa-------------a-aactagcc--gggcgtggtggcgtgctcctgtaatcccagctacttaggaggctaaggcagga---------gaacctgggaggcggaggttgcagtgagccgagatcatgccactgcactccagccagggcgacacagtgagactctatctcaa---------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30053715 242 + 173848474 actttaggaggccaaggcgggcggatcac--gaggtcaggagttcgagaccagcctgaccaacat---ggtgaaaccccatctctactaaaaacac-----acaaaa-------------a-aactagcc--gggcgtggtggcgtgctcctgtaatcccagctacttaggaggctaaggcagga---------gaacctgggaggcggaggttgcagtgagccgagatcatgccactgcactccagccagggcgacacagtgagactctatctcaa---------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5860223 248 +   6154872 actttgggaggccaaggcgggcggatcac--gaggtcaggagttcgagaccagcctgaccaacat---ggtgaaaccccatctctactaaaaatacaaaaaaaaaaa-------------a-aactagcc--gggcgtggtggcatgctcctgtaatcccagctacttaggaggctaaggcagga---------gaacctgggaggcggaggttgcagtgagccgagatcatgccactgcactccagccagggcgacacagtgagactctatctcaa-------a-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74569923 234 + 122973662 actttgggaggccaaggcgggcggatcac--gaggtcaggagttcgagaccagcctgaccaacat---ggtgaaaccccgtctctactaaaaatac------aaaaa-------------a-aactagcc--gggcttggtggcgcg--cctgtaatcccagctacttaggaggctgaggcagga---------gaacctgggaggcggaggttgcagggagccgagatca------tgcactccagccggggcgacacagtgagactctgtctcaa-------a-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30051044 259 + 172585720 actttgggaggccaaggcaggc-aatcat--aaggtctggagttcgggaccagcctgaccaacat---ggtgaaaccccgtctctactgaaaatacaaaaaacaaaaacaaaaacaaaata-acctagct--gggcgtggtggcacacgcctgtaatcccagctacttaggaggctgaggcagga---------gaacctgggaggcggaggttgcagtgagccgagatcatgccactgaactccagcctgggcgacacagcgagactccgtctcaa---------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29713891 259 - 170955103 actttgggaggccaaggcaggc-aatcat--aaggtctggagttcgggaccagcctgaccaacat---ggtgaaaccccgtctctactgaaaatacaaaaaacaaaaacaaaaacaaaata-acctagct--gggcgtggtggcgcacgcctgtaatcccagctacttaggaggctgaggcagga---------gaacctgggaggtggaggttgcagtgagccgagatcatgccactgaactccagcctgggcgacacagcgagactccgtctcaa---------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2759369 259 -   2996164 actttgggaggccaaggcgggc-gatcac--aaggtctggagttcgggaccagcctgaccaacat---ggtgaaaccccgtctctactgaaaatacaaaaaacaaaaacaaaaacaaaata-acctagct--gggcgtggtggcgcacgcctgtaatcccagctacttaggaggctgaggcagga---------gaacctgggaggtggaggttgcagtgagccgagatcatgccactgaactccagcctgggcgacacagcgagactccgtctcaa---------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     512788 259 +    766320 actttgggaggccaaggcaggc-gatcac--aaggtctggagttcgggaccagcctgaccaacat---ggtgaaaccccgtctctactgaaaatacaaaaaacaaaaacaaaaacagaata-acctagct--gggcgtggtggcgcacgcctgtaatcccagctacttaggaggctgaggcagga---------gaacctgggaggcggaggttgcagtgagccgagatcatgccactgaactccagcctgggcgacacagcgagactccgtctcaa---------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28968868 248 -  71996105 actttgggaggccaaggcaggc-gatcac--aaggtctggagttcgggaccagcctgaccaacat---ggtgaaaccccgtctctactgaaaatacaaaaa--caaaacaa---------a-acctagct--gggcgtggtggcgcacacctgtaatcccagctacttaggaggctgaggcagga---------gaacctgggaggcggaggttgcagtgagccgagatcatgccactgaactccagcctgggcgacacagcgagactccatctcaa---------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     145823 259 +    290775 actttgggaggccaaggcaggc-gatcac--aaggtctggagttcgggaccagcctgaccaacat---ggtgaaaccccgtctctactgaaaatacaaaaaacaaaaacaaaaacagaata-acctagct--gggcgtggtggcgcacgcctgtaatcccagctacttaggaggctgaggcagga---------gaacctgggaggcggaggttgcagtgagccaagatcatgccactgaactccagcctgggcgacacagcgagactccgtctcaa---------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2606105 229 -   3067355 actttgggaggccaaggcaggc-aattac--aagg--------------------tgaccaacat---ggtgaaaccctgtctctactgaaaatacaaaaaaaaaaaaaa----------a-acctagct--gggcgtggtggcacacgcctgtaatcccagctacttaggaggctgaggcagga---------gaacctgggaggcggaggttgcagtgagccgagatcatgccactgaacttcagcctgggcgacagagcgagactctgtctcaa---------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30040527 251 + 171630274 tctgtgggaggccaaggcgggcagatcct--gaggtcaggagttcaagaccagcctgactaacag---ggtaaaatccagtctctactaaaaacaa-------aaaa-------------ataattagcc--aggcatggtggtgcatgcctgtaattccagctagtcaggaggcttgggcaggagaatcacttgaacccaggagacagaggttgcagtgagctga----aaaccactacactccagcctgggtgacagagtgagactctatctgaa---aaTAA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           189567 257 -    242197 actgtgggaggccaaggcaggcagatcct--gaggttgggagttcgaaaccagcctgaccaacag---ggtaaaatccagtctctactaaaaacaa-------aaag-------------a-gattagcc--aggcatagtggtgcatgcctgtaattccagctagtcaggaggctggggcaggagaatcacttgaacccaggagacagaggttgcagtgagctgaggtcaccccacgacactccagcctggttgacagagtgagactctatctGAAaataataa-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     182310 257 -   1771730 actgtgggaggccaaggcaggcagatcct--gaggtcaggagtttgagaccagcctgaccaacag---ggtaaaatccagtctctactaaaatcaa-------aaaa-------------a-aattagcc--aggcatggtggtgcatgcctgtaattccagctagtcaggaggctggggcaggagaatcacttgaacccaggagacagaggttgcagtgagctgaggtcacaccactacactccagcctgggtgacagagtgagactctatctGACaataataa-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     257263 256 -    457564 actgtgggaggccaaggtgggcagatcct--gaggtcaggagtttgagaccagcctgaccaacag---ggtaaaatccagtctctactaaaaacaa-------aaaa-------------a--attagcc--aggcatagtggtgcatgcctgtaattccagctagtcaggagactggggcaggagaatcacttgaacccaggagacagaggttgcagtgagctgaggtcacaccactacactccagcctgggtgacagattgagactctatctgaaaataataa-
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550         18783952 249 -  18854210 atccttgggggatgaggctggaggatcactagagctgaggagtttgagaccagtctgaacaagagaaagaccagaccctgcctgtataaaaaat---------aaaa-------------a-acttaagttggggtgtgatggctcctgcctgtagtccctgctactt-ggaggttgaggcagtaagatcacttgagctcag--ggatgaggttgcggtaagtt---atgtcagcactgaactctagccaaggtgacagagcaagactatgtctcaa--------a
i otoGar3.GL873550         C 0 T 73261
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57905173 1337 -  94987271 I
e dasNov3.JH582591            13299  32 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26206424   0 +  26524999 C

a score=55404.000000
s hg38.chr6_GL000254v2_alt   856665 12 +   4827813 taatcataatca
s panTro5.chr6             29819337  7 + 175400573 -----aTAATCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30053957  7 + 173848474 -----aTAATCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5860471 12 +   6154872 taatcataatca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74570157 12 + 122973662 taatcataatca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30051303  7 + 172585720 -----aTAATCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29714150  7 - 170955103 -----aTAATCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2759628  7 -   2996164 -----aTAATCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     513047  7 +    766320 -----ataaTCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28969116  7 -  71996105 -----aTAGTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     146082  7 +    290775 -----ataatca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2606334  7 -   3067355 -----aTAATCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30040778 12 + 171630274 TAATAACGATAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           189824 12 -    242197 taataacaataa
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     182567 12 -   1771730 taataacaataa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     257519 12 -    457564 taataacaataa
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57905173 1337 -  94987271 I
e dasNov3.JH582591            13299 32 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26206424  0 +  26524999 C
e otoGar3.GL873550         18784201 73261 -  18854210 T

a score=363739.000000
s hg38.chr6_GL000254v2_alt   856677 40 +   4827813 taatcataatcTCAGCCCTACAGGTAAGGCTAAGCTTAAT
s panTro5.chr6             29819344 40 + 175400573 TAATCATAATCTCAGCCCTACAGGTAAGGCTAAGCTTAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30053964 40 + 173848474 TAATCATAATCTCAGCCCTACAGGTAAGGCTAAGCTTAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5860483 40 +   6154872 taatcataatcTCAGCCCTACAGGTAAGGCTAAGCTTAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74570169 40 + 122973662 taatcataatctaagccctataggtaaggctaagcttaaT
i nomLeu3.chr1a            C 0 I 1313
s rheMac8.chr4             30051310 39 + 172585720 T-ATCATAATCTCAGCCCGATAGGTAAGGCTAACCTTAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29714157 39 - 170955103 T-ATCATAATCTCAGCCCGATAGGTAAGGCTAACCTTAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2759635 40 -   2996164 TAATCATAATCTCAGCCCAATAGGTAAGGCTAACCTTAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     513054 40 +    766320 TAATCATAATCTCAACCCGATACGTAAGGCTAACCTTAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28969123 40 -  71996105 TAATCATAATCTCAGCCGTATAGGTAAGGCTAACCTTAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     146089 40 +    290775 taatcataatctcaacccgatacgtaaggctaaccttaat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2606341 40 -   3067355 TAATCATAATCTCAGCCCTATAGGTAAGGCTAACCTTTAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30040790 40 + 171630274 CAATCCTAATCTCATCCTTATAGGTAATGCTAATCTTAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           189836 40 -    242197 taatCCTGATCTAAGCCATATAGGTGATGCTAACCTTAAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     182579 40 -   1771730 taatcctaatCTCAGCCCTGTAGGTAATGCTAACCTTAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     257531 40 -    457564 taatcctaatctcagccctataggtaatgctaatcttaat
i aotNan1.NW_018509740v1   C 0 C 0
s dasNov3.JH582591            13331 40 +    102524 TAATCCTAGCCTCAGTCTTACAAACTGCACTAACGTTCAA
i dasNov3.JH582591         I 32 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57905173 1337 -  94987271 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26206424  0 +  26524999 C
e otoGar3.GL873550         18784201 73261 -  18854210 T

a score=71944.000000
s hg38.chr6_GL000254v2_alt   856717 6 +   4827813 TCCACT
s panTro5.chr6             29819384 6 + 175400573 TCCACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30054004 6 + 173848474 TCCACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5860523 6 +   6154872 TCCACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74571522 6 + 122973662 TCCACT
i nomLeu3.chr1a            I 1313 C 0
s rheMac8.chr4             30051349 6 + 172585720 TCCACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29714196 6 - 170955103 TCCACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2759675 6 -   2996164 TCCACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     513094 6 +    766320 TCCACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28969163 6 -  71996105 TCCACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     146129 6 +    290775 TCCACT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2606381 6 -   3067355 TCCATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30040830 6 + 171630274 TCCACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           189876 6 -    242197 TCCACT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     182619 6 -   1771730 TCCACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     257571 6 -    457564 TCCACT
i aotNan1.NW_018509740v1   C 0 C 0
s dasNov3.JH582591            13371 5 +    102524 -CCACT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57905173 1337 -  94987271 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26206424 0 +  26524999 C
e otoGar3.GL873550         18784201 73261 -  18854210 T

a score=1950176.000000
s hg38.chr6_GL000254v2_alt   856723 197 +   4827813 TTTCAAATCACTGTAGTAAGACCTTTTTTTCATGACCCCCTC-TATCTGCTTTCTCTTACTGGCACCTAGAAATGTCTACACTTTTCTCCTGTTTATCATCTCCCTACAGCCAGAGGCTATAATGTTTGTATATAGTAAAATCGTTTCTAGACTGACTCTAGGGGAAATGCAACAGAGAATTAAATAAAGTAGTCTAA
s panTro5.chr6             29819390 197 + 175400573 TTTCAAATCACTGTAGTAAGACCTTTTTTTCATGACCCCCTC-TATCCGCTTTCTCTTACTGGCACCTAGAAATGTCTACACTTTTCTCCTGTTTATCATCTCCCTACAGCCAGAGGCTGTAATGTTTGTGTATAGTAAAATCGTTTCTAGACTGACTCTAGGGGAAATGCAACAGAGAATTAAATAAAGCAGTCTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30054010 197 + 173848474 TTTCAAATCACTGTAGTAAGACCTTTTTTTCATGACCCCCTC-TATCCGCTTTCTCTTACTGGCACCTAGAAATGTCTACACTTTTCTCCTGTTTATCATCTCCCTACAGCCAGAGGCTGTAATGTTTGTGTATAGTAAAATCGTTTCTAGACTGACTCTAGGGGAAATGCAACAGAGAATTAAATAAAGCAGTCTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5860529 197 +   6154872 TTTCAAATCACTGTAGTAAGACCTTTTTTTCATGACCCCTTC-TATCCGCTTTCTCTTACTGGCACCTAGAAATGTCTACACTTTTCTCCTGTTCATCAGCTCCCTACAGCCAGAGGCTGTAACGTTTGTGTATAGTAAAATCGTTTCTAGACAGACTCTAGGGGAAACGCAACAGAGAATTAAATAAAGCAGTCTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74571528 193 + 122973662 TTTCAAATCACTGTAGTAAGACC-TTTTTTCATGACCCCCTC-TATCTGCTTTCTCTTACTGTCACCTAGAAATGTCTACAATTTTCCCCTGTTTATCAGCTCCCTACAGCCAGAGGCTGTAATGTTTGTGTATAGTAAAATCGTTTCTAGGCAGACTCTAGGGGAAATGCAACAGAGAA-TAAATAAC-CAGTTT-C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30051355 196 + 172585720 TTTCAAATCACTGTAGTAAGACC-TTTTTTTATGACCCCCTC-TATCTTATTTCTCTTACTGGCACCTAGAAATGTCTATACTTTTCTCCTGTTTATCAGTTCCCTACAGCCAGAGGCTATAATGTTTGTGTATAGTAAAATCATTTCTAGACAGACTCTACAGAAAGTGCAACAGAGAATTAAATAAAGCAGTCTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29714202 196 - 170955103 TTTCAAATCACTGTAGTAAGACC-TTTTTTTATGACCCCCTC-TATCTTCTTTCTCTTACTGGCACCTAGAAATGTCTATACTTTTCTCCTGTTTATCAGTTCCCTACAGCCAGAGGCTATAATGTTTGTGTATAGTAAAATCATTTCTAGACAGACTCCACAGAAAGTGCAACAGAGAATTAAATAAAGCAGTCTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2759681 192 -   2996164 TTTCAAATCACTGTAGTAAGACC-TTTTTTTATGACCCCCTC-TATCTTCTTTCTCTTACTGGCACCTAGAAATGTCTATACTTTTCTCCTGTTTATCAGTTCCCTACAGCCAGAGGCTATAATGTTTGTGTATAGTAAAATCATTTCT----AGACTCTACGGAAAGTGCAACAGAGAATTAAATAAAGCAGTCTAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     513100 196 +    766320 TTTCAAATCACTGTAGTAAGACC-TTTTTTTATGACTCCCTC-TATCTTCTTTCTCTTACTGGCACCTAGAAATGTCTATACTTTTCTCCTGTTTATCAGTTCCCTACAGCCAGAGGCTATAATGTTTGTGTATAGTAAAATCATTTCTAGACAGACTCTACGGAAAGTGCAACAGAGAATTAAATAAAGCAGTCTAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28969169 196 -  71996105 TTTCAAATCACTGTAGTAAGACC-TTTTTTTATGACCCCCTC-TATCTTCTTTCTCTTACTGGCACCTAGAAATGTCTATACTTTTCTCCTGTTTATCAGTTCCCTACAGCCAGAGGCTGTAATGTTTGTGTATAGTAAAATCATTTCTAGACAGACTCTACGGAAAGTGCAACAGATAATTAAATAAAGCAGTCTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     146135 196 +    290775 TTTCAAATCACTGTAGTAAGACC-TTTTTTTATGACTCCCTC-TATCTTCTTTCTCTTACTGGCACCTAGAAATGTCTATACTTTTCTCCTGTTTATCAGTTCCCTACAGCCAGAGGCTATAATGTTTGTGTATAGTAAAATCATTTCTAGACAGACTCTATGGAAAGTGCAACAGAGAATTAAATAAAGCAGTCTAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2606387 197 -   3067355 TTTCAAATCACTGTAGTAAGACC-TTTTTTTATGACCCCCTCTTATCTTCTTTCTCTTACTGGCACCTAGAAATGTCTATACTTTTCTCCTGTTTATCAGTTCCCTACAGCCAGAGGCTGTAACGTTTGTGTATAGTAAAATCACTTCTAGACAGACTCTACGGAAAGTGCAACAGAGAATTAAATAAAGCAGTCTAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30040836 197 + 171630274 TTTTGAATTACTGTAGTAGGACCTTTTTCTCATGACCCCCTC-TATCCTCTTTCTCTTACTGGCACCCAGAAATGTCTATGCTTTTCTCCTATTTATCAGCTCCCTACAGCCAGAGGCTGTAATATTTGTGTACAATAAAATAGTTTCTAGACAGACTCTAGGGGAAATGCAACAGAAAATTAAATAAAGCAGTCTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           189882 196 -    242197 TTTCGAATCACTGTGGTACGGCCTTTTCCTCATGACCCCCTC-TGTCCTCTTTCTCTTACTGGCACCTAGAAATGCCTACGCTTTTCTCCTATTTATCAGCTCCCTACAGCCAGAGGCTACAATGTTTGTGCACAATAAAATCATTTCTAGACAGACTCTAGGGGAACTGCAACAGAAAATTAAATAAAGCA-TCTAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     182625 194 -   1771730 TTTTGAATTACTGTAGTACGACCTTTTTCTCATGACCCCCTC-TATC--CTTTCTCTTACTGGCACCTAGAAATGTCTACGTTTTTCTCCTATTTATCAGCTGCCTACAGCCAGGGGCTGTAATATTTATGTACAATAAAATCATTTCTAGACAGACTCTAGGGGAACTGCAACAGAAAACTAAATAAAGCA-TCTAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     257577 196 -    457564 TTTTGAATTACTGTAGTACGACCTTTTTCTCATGACCCCCTC-TATCCTCTTTCTCTTACTGGCACCTAGAAATGTCTACACTTTTCTCCTATTTAT-AGCTCCCTATAGCCAGAGGCTGTAATGTTTGTGTACAATAAAATCATTTCTGGACAGACTCTAGGGGAACTGCAACAGAAAATTAAATAAAGTAGTCTAA
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26206424 145 +  26524999 TTTCAAGTCACTTACATGAT----TTATCTCATGACCACCTC-TGCC--CTTTCTCTCATGAGTACTTGGAAACCTCCA---------CCTGCCCCTCAGCTCCATAAACACAGAAGCCCTAGT-------------------------------------CGGGAGATGCAGTGGAGAATTACATGAAGGAGTCTGA
i canFam3.chr35            C 0 I 1206
s dasNov3.JH582591            13376 169 +    102524 TCTCAGACCTTCTCTTTGATACC---TTCTCATGACCACCTC---CCTGCTTTCTCTCACTGACCCCTGGAAA--------CTTCTTTCCCATTCATGAGCT-CCTCTGTGTGGAGGCCCTGAGGTACAGGCTCAGCAAAAACCTTTCTAGACAGACAGTCGGGGAATAGAAAGAATGATTTAA--------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57905173 1337 -  94987271 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e otoGar3.GL873550         18784201 73261 -  18854210 T

a score=131073.000000
s hg38.chr6_GL000254v2_alt   856920 12 +   4827813 AAGAATCTGCTT
s panTro5.chr6             29819587 12 + 175400573 AAGAATATGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30054207 12 + 173848474 AAGAATATGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5860726 12 +   6154872 AAGAATCTGCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74571721 12 + 122973662 AAGAATTTTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30051551 12 + 172585720 AAGAATCTGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29714398 12 - 170955103 AAGAATCTGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2759873 12 -   2996164 AAGAATCTGCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     513296 12 +    766320 AAGAATCTGCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28969365 12 -  71996105 AAGAATCTGCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     146331 12 +    290775 AAGAATCTGCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2606584 12 -   3067355 AAGAATCTGCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30041033 12 + 171630274 AAGAATCTGCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           190078 12 -    242197 AAGCATCTGCTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     182819 12 -   1771730 AAGAATCTGCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     257773 12 -    457564 AAGAATCTGCTT
i aotNan1.NW_018509740v1   C 0 C 0
s dasNov3.JH582591            13545 12 +    102524 CAAAATCTACTT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57905173 1337 -  94987271 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26206569 1206 +  26524999 I
e otoGar3.GL873550         18784201 73261 -  18854210 T

a score=2116790.000000
s hg38.chr6_GL000254v2_alt   856932 207 +   4827813 TGTTGAATAAATGGTTTAACA------TAGGACTTA-GGACTAACATCTCTTATCCTAAATTCATT-----GTTTCCAT--GTGA-CAGTCATCTATTGGATACTCT-GTGAGAAAATCCAATATAAAGTTACTCAGTCACAACCCCCACAATGTCCAGTGAAAATAGGGATGGTCAGGCACATAGTGCCAGCATACATGACAGTTACACAACTGAATTGGAG-
s panTro5.chr6             29819599 202 + 175400573 TGTTGAATAAATGGTTTAACA------TAGGACTTA-GGACTAACATCTCTTATCCTAAATTCATT-----GTTTCCAT--GTGA-CAGTCATCTATTGGATACTCT-GTGAGAAAATCCAATATAAAGTTACTCAGTCACAACCCCCACAATGTCCAGTGAAAACAGGGATGGTCAGACACATAGTTCCAGCATACATGACAGTTACAC-----AATTGGAG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30054219 202 + 173848474 TGTTGAATAAATGGTTTAACA------TAGGACTTA-GGACTAACATCTCTTATCCTAAATTCATT-----GTTTCCAT--GTGA-CAGTCATCTATTGGATATTCT-GTGAGAAAATCCAATATAAAGTTACTCAGTCACAACCCCCACAATGTCCAGTGAAAATAGGGATGGTCAGACACATAGTTCCAGCATACATGACAGTTACAC-----AATTGGAG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5860738 207 +   6154872 TGTTGAATAAATGGTTTAACA------TAGGACTTA-GGACTAACATCTCTTATCCTAAATTCATT-----GTTTCCAT--GTAA-CAGTCATCTATTGGATACTCT-GTGAGAAAATCCAATATAAAGTTACTCAGTCACAACCCCCACAATGTCCAGTGAAAATAGGGATGGTCAGACACATAGTTCCAGCATACATGACAGTTACACAACTGAATTGGAG-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74571733 208 + 122973662 TG-AGAATAAATGGTTTAACA------TAGGACTTA-GGACTAACATCTCTTATCCCAAATTCATTTA---ATTTCCAT--ATGA-CAGTCATCTATTGGATACTCT-GTGAGAAAATCCAATATAAAGTTACTCAATCGCAACCCCCACAATGTCCAATGAAAATAGGGATGGTCAGACACATAGTTCCAGCATACGTGACAGTTACACAACTGAATTGGAG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30051563 209 + 172585720 TGTTGAATAAATGGTTTAACA------TAGGCCTTA-AGACTAACATCTCTTATCCCAAATTCATTCA---GTTTCCAT--GTAA-TAGTCATCTATTGGATACTCT-GTGAGAAAATCCAATATAAGGTTACTCAGTCACAACCCCCACAATGTCCAATGAAAACAGGGATGGTCAGACACATAGTTCCAGCATGCATGACAGTTACACAACTGAATTGGAG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29714410 209 - 170955103 TGTTGAATAAATGGTTTAACA------TAGGCCTTA-AGACTAACATCTCTTATCCCAAATTCATTCA---ATTTCCAT--GTAA-TAGTCATCTATTGGATACTCT-GTGAGAAAATCCAATATAAGGTTACTCAGTCACAACCCCCACAATGTCCAACGAAAATAGGGATGGTCAGACACATAGTTCCAGCATGCATGACAGTTACACAACTGAACTGGAG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2759885 209 -   2996164 TGTTGAATAAATGGTTTGACA------TAGGCCTTA-AGACTAACATCTCTTATCCCAAATTCATTCA---ATTTCCAT--GTAA-TAGTCATCTATTGGATACTCT-GTGAGAAAATCCAATATAAGGTTACTCAGTCACAACCCCCACAATGTCCAACGAAAATAGGGATGGTCAGACACATAGTTCCAGCATGCATGACAGTTACACAACTGAACTGGAG-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     513308 209 +    766320 TGTTGAATAAATGGTTTAACA------TAGGCCTTA-AGACTAACATCTCTTATCCCAAATTCATTCA---ATTTCCAT--GTAA-TAGTCATCTATTGGATACTCT-GTGAGAAAATCCAATATAAGGTTACTCAATCACAACCCCCACAATGTCCAACGAAAATAGGGATGGTCAGACACATAGTTCCAGCATGCATGACAGTTACACAACTGAACTGGAG-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28969377 209 -  71996105 TGTTGAATAAATGGTTTAACA------TAGGCCTTA-AGACTAACATATCTTATCCCAAATTCATTCA---ATTTCCAT--GTAA-CAGTCATCTACTGGATACTCT-GTGAGAAAATCCAATATAAGGTTACTCATTCACAACCCCTACAATGTCCAATGAAAATAGGGATGGTCAGACACATAGTTCCAGCATGCATGACAGTTACACAACTGAATTGGAG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     146343 209 +    290775 TGTTGAATAAATGGTTTAACA------TAGGCCTTA-AGACTAACATCTCTTATCCCAAATTCATTCA---ATTTCCAT--GTAA-TAGTCATCTATTGGATACTCT-GTGAGAAAATCCAATATAAGGTTACTCAATCACAACCCCCACAATGTCCAACGAAAATAGGGATGGTCAGACACATAGTTCCAGCATGCATGACAGTTACACAACTGAACTGGAG-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2606596 209 -   3067355 TGTTGAATAAATGGTTTAACA------TAGGCCTTA-AAACTAACATCTCTTATCCCAAATTCATTCA---ATTTCCAT--GTAA-CAGTCATCTGTTGGATACTCT-GTGAGAAAATCCAATATAAGGTTACTCAATCACAAACCCCACAATGTCCAACGAAAATAGGGATGCTCAGACACATAGTGCCAGCATGCATGACAGTTACACAACTGAATTGGAG-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30041045 207 + 171630274 TGTTGATTAAATGGTTTAACA------TAGGTCTTA-GGACTAACATCACTTACCCCAATTTCATTCC---ATTTTTAT--GTGA-CAATCATCTCTTGGATACTCT-GGTAGAAAATCCAATATAA-GGTGCCCAATCACAATCCTTACAAGGTCCAAGGAAGATAGGGATGGTCAGAGACATAGTTCCAGCATACATGACAGTTACAT-ACTGAATTAGAG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           190090 208 -    242197 TGTTGATTAAATAGTTTAACA------TAGGTCTTA-GGACTAGTATCGCTTACCCCAAATTCATTCA---ATTTTTAC--GTGA-CAATCATCTCTTGGATACTCT-GGGAGAAAATCCAATATAA-GCTGCCCAATCACAATCCTCACAATGTCCAAGGAAGATAGGGATGGTCAGAGACATAGTTCCAGCATACATGACAGTTACACAACTGAATTAGAG-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     182831 208 -   1771730 TGTTGATTAAATGGTTTAACA------AAGGTCTTA-GGACTAATATTACTTACCCCAAATTCATTCA---ATTTTTAT--GTGA-CAATCATCTCTTGGATACTCT-GGGAGAAAATCCAATATAA-GCTGCCCATTCACAATCCTCACAATGTCCAAGGAAGATAGGGATGGTCAGAGACATAGTTCCGGCATACATGACAATTACACAACTGAATTAGAG-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     257785 208 -    457564 TGTTGATTAAATGGTTTAACA------TAGGTCTTA-GGACTAACATCGCTTCACCCAAATTCATTCA---ATTTTTAT--GTGA-CAATCATCTCTTGGATACTCT-GGGAGAAAATCCAATATAA-GATGCCCAATCACAATCCTCACAATGTCCAAGGAAGATAGGGATGGTCAGAGACATAGTTCCAGCACACATGAGAGCTACACAACTGAATTAGAG-
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26207775 203 +  26524999 tggtgaataattttcttaatatgttgttggaccctattggctagtat--cttgttgagaatttttgcatccatgttcatcaggga-tattgatctgt--aattctTTCAGGAGAAAATCTATCCTAA----ACTTAATTATAACCCTCAAAGTGTCCAGGGAAGAGAAGGATGGTCAGAGACATCGTTCCAGC-----------TTAAGAAACTGAGTTTGAG-
i canFam3.chr35            I 1206 I 604
s dasNov3.JH582591            13557 201 +    102524 TGTTGAATAAATGGTCTAACA------CAGTCCTAA-GAGTTAGCAC--CTTATTCTGAATTTACTCA---AGCTCCAT--GTGAGGGGTCATCTCCTGGACACTGT-AGGAGAAAACCCAACACCA-GTTGACTAGTCACAACCCCAATGGGG-CTGGTGAAGATTCGAATGGCCAGAGACATCTTTCCAGCCTA------AGTTACATGAGTGAGTTGGGAG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57905173 1337 -  94987271 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e otoGar3.GL873550         18784201 73261 -  18854210 T

a score=146270.000000
s hg38.chr6_GL000254v2_alt   857139 15 +   4827813 CAAATAAGAGTCTAC
s panTro5.chr6             29819801 15 + 175400573 CAAATAAGAGTATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30054421 15 + 173848474 CAAATAAGAGTATAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5860945 15 +   6154872 CAAATAAGAGTCTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74571941 15 + 122973662 CAAATAAGAGTCTAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30051772 15 + 172585720 CAAATAAGAGTCTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29714619 15 - 170955103 CAAATAAGAGTCTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2760094 15 -   2996164 CAAATAAGAGTCTAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     513517 15 +    766320 CAAATAAGAGTCTAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28969586 15 -  71996105 CAAATAAGAGTCTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     146552 15 +    290775 CAAATAAGAGTCTAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2606805 15 -   3067355 CAAATAAGAGTCTAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30041252 15 + 171630274 CAAATAAGAGTGCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           190298 15 -    242197 CAAATAAGAGTGCAC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     183039 15 -   1771730 CAAATAAGAGTGCAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     257993 15 -    457564 CAAGTAAGAGTGCAC
i aotNan1.NW_018509740v1   C 0 C 0
s dasNov3.JH582591            13758 14 +    102524 CAAGGAGGGGTCCC-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57905173 1337 -  94987271 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26207978 604 +  26524999 I
e otoGar3.GL873550         18784201 73261 -  18854210 T

a score=618136.000000
s hg38.chr6_GL000254v2_alt   857154 62 +   4827813 AGGAATACAGAATTAAAGAATAATGTGTGTGAGTGCTTGGAGCGGCAGTGATCATGGA-AGCC
s panTro5.chr6             29819816 62 + 175400573 AGGAATACAGAATTAAAGAATAAAGTGTGTGAGTGCTTGGAGCGGCAGTGATCATGGA-AGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30054436 62 + 173848474 AGGAATACAGAATTAAAGAATAAAGTGTGTGAGTGCTTGGAGCGGCAGTGATCATGGA-AGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5860960 61 +   6154872 AGGAATACAGAATTAAAGAATAAAGTGTGTGAGTGCTTGGAGC-GCAGTGATCATGGA-AGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74571956 62 + 122973662 AGGAATACAGAATTAAAGAATAAAGCGTGTGAGTGCTTGGAGCGGCAGTGATCATGGA-AGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30051787 63 + 172585720 AGGAATACAGAATTGAAGAAAAAAGTGTGTGAGTGCTTGGAGCGGCAGTGATCATAGACATCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29714634 63 - 170955103 AGGAATACAGAATTGAAGAAAAAAGTGTGTGAGTGCTTGGAGCGGCAGTGATCATAGACATCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2760109 63 -   2996164 AGGAATACAGAATTGAAGAAAAAAGTGTGTGAGTGCTTGGAGCGGCAGTGATCATAGACATCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     513532 63 +    766320 AGGAATACAGAATTGAAGAAAAAAGTGTGTGAGTGCTTGGAGCGGCAGTGATGATAGACATCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28969601 63 -  71996105 AGGAATACAGAATTGAAGAAAAAATTGTGTGAGTGCTTGGAGCGGCAGTGATCATAGACATCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     146567 63 +    290775 AGGAATACAGAATTGAAGAAAAAAGTGTGTGAGTGCTTGGAGCGGCAGTGATGATAGACATCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2606820 63 -   3067355 AGGAATACAGAATTGAAGAAGAAAATGTGTGAGTGCTTGGAGCGGCAGTGATCATAGACATCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30041267 63 + 171630274 AGGAATACAGAATAAAAGAATAAAGTGTTTGAGTGCTTGGAGCAGGGGTGATCGCAGAAATCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           190313 63 -    242197 AGGAATACAGAATAAAAGAATAAAGTGTTTGAGTGCTTGGAGCAGTGGTGATCACAGAAATCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     183054 63 -   1771730 AGGAATACAGAATAAAGGAATAAAGTGTTTGAGTGCTTGGGGCAGGGGTGATCACAGAAATCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     258008 63 -    457564 AGGAATACAGAATAAAAGAATAAAGTGTTTGAGTGCTTGGAGCGGGGGTGATCACAGAAATCT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            71105 63 +  18854210 agaaaTACAGAATGAAAGAATCAAGTGTACAAGTGTCAGAGGTGAGAGATATCACAGAAGTCT
i otoGar3.GL873550         I 2639 C 0
s dasNov3.JH582591            13772 54 +    102524 AGGGATGCAGGACAGAAGAGCACAGAGTACGAGTG---------GTGGGGATTGGAGACACCC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57905173 1337 -  94987271 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26207978 604 +  26524999 I

a score=439709.000000
s hg38.chr6_GL000254v2_alt   857216 36 +   4827813 TCTTAGAGGTTTGAACCACAGAAGAGTAAACAA----AAT
s panTro5.chr6             29819878 36 + 175400573 TCTTAGAGGTTTGAACCACAGAAGAGTAAACAA----AAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30054498 36 + 173848474 TCTTAGAGGTTTGAACCACAGAAGAGTAAACAA----AAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5861021 36 +   6154872 TCTTAGAGGTTTGAACCACAGAAGAGTAAACAA----AAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74572018 36 + 122973662 TCTTAGAGGTTTGAACCACAGAAGAGTAAACAA----AAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30051850 40 + 172585720 TCTTAGAGGTTTGAACCACAGAAGAGTAAACAAAATTAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29714697 40 - 170955103 TCTTAGAGGTTTGAACCACAGAAGAGTAAACAAAATTAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2760172 40 -   2996164 TCTTAGAGGTTTGAACCACAGAAGAGTAAACAAAATTAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     513595 40 +    766320 TCTTAGAGGTTTGAACCACAGAAGAGTAAACAAAATTAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28969664 40 -  71996105 TCTTAGAGGTTTGAACCACAGAAGAGTAAACAACATTAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     146630 40 +    290775 TCTTAGAGGTTTGAACCACAGAAGAGTAAACAAAATTAAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2606883 40 -   3067355 TCTTAGAGGTTTGAACCACAGAAGAGTAAACAAAATCAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30041330 36 + 171630274 TCTTAGAGATTTGAACCACAGAAGAGTAAACAA----AAT
i calJac3.chr4             C 0 I 4
s saiBol1.JH378357           190376 36 -    242197 TCTTAGAGATTTGAACCACAGAAGAGTAAACAA----AAT
i saiBol1.JH378357         C 0 I 4
s cebCap1.NW_016107755v1     183117 36 -   1771730 TCTTAGAGATTTGAACCACAGAAGGGTAAACAA----AAT
i cebCap1.NW_016107755v1   C 0 I 2684
s aotNan1.NW_018509740v1     258071 36 -    457564 TCTTAGAGATTTGAAACACAGAAGAGTAAATAA----AAT
i aotNan1.NW_018509740v1   C 0 I 2696
s otoGar3.GL873550            71168 40 +  18854210 TTCTAGAGGTTTGAATCACAGCAGATGGAAGAAAACTAAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57906510 36 -  94987271 TTCTGGAAATTTGTCCCACAGCAGAGAGAACAA----TAT
i mm10.chr17               I 1337 C 0
s dasNov3.JH582591            13826 36 +    102524 TCCTAGAGGTTAGGATGACGGCAGGGGGAGCAA----AGT
i dasNov3.JH582591         C 0 I 35
e micMur3.chr6                75580 1696 + 123392446 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26207978 604 +  26524999 I

a score=120031.000000
s hg38.chr6_GL000254v2_alt   857252 15 +   4827813 AAGAAGTATTTGCTG
s panTro5.chr6             29819914 15 + 175400573 AAGAAGTATTTGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30054534 15 + 173848474 AAGAAGTATTTGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5861057 15 +   6154872 AAGAAGTATTTGCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74572054 12 + 122973662 AAGAAATATTTG---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30051890 15 + 172585720 AAAAAATATTTGCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29714737 15 - 170955103 AAAAAATATTTGCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2760212 15 -   2996164 AAAAAATATTTGCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     513635 15 +    766320 AAAAAATATTTGCTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28969704 15 -  71996105 AAGAAATATTTGCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     146670 14 +    290775 AAAAAA-ATTTGCTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2606923 15 -   3067355 AAGAAATATTTGCTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30041370 15 + 171630274 AAGAAATATTTGCTG
i calJac3.chr4             I 4 I 2662
s saiBol1.JH378357           190416 15 -    242197 AAGAAATATTTGCTG
i saiBol1.JH378357         I 4 I 1162
s otoGar3.GL873550            71208 15 +  18854210 ATGAAATACTTGCTG
i otoGar3.GL873550         C 0 I 4
s mm10.chr17               57906546 15 -  94987271 TTTAAATATCTGCTG
i mm10.chr17               C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e dasNov3.JH582591            13862 35 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26207978 604 +  26524999 I
e aotNan1.NW_018509740v1     258107 2696 -    457564 I
e cebCap1.NW_016107755v1     183153 2684 -   1771730 I

a score=24089.000000
s hg38.chr6_GL000254v2_alt   857267 3 +   4827813 ACT
s panTro5.chr6             29819929 3 + 175400573 ACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30054549 3 + 173848474 ACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5861072 3 +   6154872 ACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74572066 2 + 122973662 -CT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30051905 3 + 172585720 ACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29714752 3 - 170955103 ACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2760227 3 -   2996164 ACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     513650 3 +    766320 ACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28969719 3 -  71996105 ACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     146684 3 +    290775 ACT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2606938 3 -   3067355 ACT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550            71227 3 +  18854210 ACT
i otoGar3.GL873550         I 4 C 0
s mm10.chr17               57906561 3 -  94987271 ACT
i mm10.chr17               C 0 I 5566
e micMur3.chr6                75580 1696 + 123392446 I
e dasNov3.JH582591            13862 35 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26207978 604 +  26524999 I
e saiBol1.JH378357           190431 1162 -    242197 I
e aotNan1.NW_018509740v1     258107 2696 -    457564 I
e cebCap1.NW_016107755v1     183153 2684 -   1771730 I
e calJac3.chr4             30041385 2662 + 171630274 I

a score=32266.000000
s hg38.chr6_GL000254v2_alt   857270 5 +   4827813 GTGTA
s panTro5.chr6             29819932 5 + 175400573 GTGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30054552 5 + 173848474 GTGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5861075 5 +   6154872 GTGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74572068 5 + 122973662 GTGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30051908 5 + 172585720 GTGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29714755 5 - 170955103 GTGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2760230 5 -   2996164 GTGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     513653 5 +    766320 GTGTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28969722 5 -  71996105 GTGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     146687 5 +    290775 GTGTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2606941 5 -   3067355 GTGTG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550            71230 5 +  18854210 GTGTG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            13862 35 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26207978 604 +  26524999 I
e saiBol1.JH378357           190431 1162 -    242197 I
e aotNan1.NW_018509740v1     258107 2696 -    457564 I
e cebCap1.NW_016107755v1     183153 2684 -   1771730 I
e calJac3.chr4             30041385 2662 + 171630274 I

a score=1474044.000000
s hg38.chr6_GL000254v2_alt   857275 267 +   4827813 GAAAtgagatgatgcaaagaccccctttttaggggcttgggga--ctcctaagcatggaaataaagcaaaatcctgtgtttcttcaaggaaaattccaggcacctagctggctctgagaaataagtagcaacttgaaaagcaacaaggtaatagcagcc--taagacaatagccaaggaagttaagcgttctgaataggtttgctttcctcatagaaactaaagataacctcttaacatatgtctctgcgttgtctctcagaaactcggaa
s panTro5.chr6             29819937 267 + 175400573 GAAAtgagatgatgcaaagaccccctttttaggggcttgtgga--ctcccaagcatggaaataaagcaaaatcctgagtttcttcaaggaaaattccaggcacctagctggctctgagaaataagtagcaacttgaaaagcaagaaggtaatagcagcc--taagacaatagccaaggacgttaagcgttctgaataggtttgctttcctcatagaaactaaagataacctcttaacatatgtctctgagttgtctctcagaaactcggaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30054557 267 + 173848474 GAAAtgagatgatgcaaagaccccctttttaggggcttgtgga--ctcccaagcatggaaataaagcaaaatcctgagtttcttcaaggaaaattccaggcacctagctggctctgagaaataagtagcaacttgaaaagcaagaaggtaatagcagcc--taagacaatagccaaggacgttaagcgttctgaataggtttgctttcctcatagaaactaaagataacctcttaacatatgtctctgagttgtctctcagaaactcggaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5861080 266 +   6154872 GAAAtgagatgatgcaaaga-cccctttttaggggcttgtgga--cttccaagcatggaaataaagcaaaatcctgagtttcttcaaggaaaattccaggcacctagctggctctgagaaataagtagcaacttgaaaagcaagaaggtaatagcagcc--taagacaatagccaaggaagttaagcgttctgaataggtttgctttcctcatagaaactaaagatgacctcttaacatatgtctctgagttgtctctcagaaactcggaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74572073 267 + 122973662 GAAAtgagatgatgcaaagaccccctttttaggggcttgtgga--ctcccaagcatggaaataaagcaaaatcctgaatttcttcaaggaaaattccaggcacctagctagctctgagaagtaagtagcaacttgaaaagcaagaaggtaatagcagcc--taagacaatagccaaggaagttaagcgttctgaataggttcgctttcctcatagaaactaaagataacctcttaacatatgtctctgagttgtctctcagaaactcggaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30051913 266 + 172585720 GAAAtga---gatgcagagaccccctttttaggggcctgtgaacccccccaagcatggaaataaagcaaaatcctgagtttcttcaaggaaaattccaggcacctagctagctctgagaaataagtagcaacttgataagcaagaaggtaatagcagcctataagacaatagccaaggaagttaagcattcggaataggtttgatttcctcatagaaactaaagataacatcttaacatatgtctctgagttg--tctcagaaacccggaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29714760 264 - 170955103 GAAAtga---gatgcagagaccccctttttaggggcctgtgaacccccccaagcatggaaataaagcaaaatcctgagtttcttcaaggaaaattccaggcacctagctagctctgagaaataagtagcaacttgataagcaagaaggtaatagcagcc--taagacaatagccaaggaagttaagcattcggactaggtttgatttcctcatagaaactaaagataacatcttaacatatgtctctgagttg--tctcagaaacccggaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2760235 256 -   2996164 GAAAtga---gatgcagagaccccctttttaggggcctgtgaa--cccccaagc------ataaagcaaaatcctgagtttcttcaaggaaaattccaggcacctagctagctctgagaaataagtagcaacttgataagcaagaaggtaatagcagcc--taagacaatagccaaggaagttaagcattcggaataggtttgatttcctcatagaaactaaagataacatcttcacatacgtctctgagttg--tctcagaaacccggaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     513658 262 +    766320 GAAAtga---gatgcagagaccccctttttaggggcctgtgaa--ctcccaagcatggaaataaagcaaaatcctgagtttcttcaaggaaaactccaggcacctagctagctctgagaaataagtagcaacttgataagcaagaaggtaatagcagcc--taagacaatagccaaggaagttaagcattcggaataggtttgatttcctcatagaaactaaagataacatcttaacatatgtctctgagttg--tctcagaaacccggaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28969727 262 -  71996105 GAAAtga---gatgcagagacctcctttttaggggcctgtgaa--cccccaagcatggaaataaagcaaaatcctgagtttcttcaaggaaaattccaggcacctagctagctccgagaaataagtagcaacttgataagcaagaaggtaatagcagcc--taagacaatagccaaggaagttaagcgttcggaataggtttgatttcctcgtagaaactaaagataacatcttaacatatgtctctgagttg--tctcagaaactcggaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     146692 262 +    290775 GAAAtga---gatgcagagaccccctttttaggggcctgtgaa--ctcccaagcatggaaataaagcaaaatcctgagtttcttcaaggaaaattccaggcacctagctagctctgagaaataagtagcaacttgataagcaagaaggtaatagcagcc--taagacaatagccaaggaagttaagcattcggaataggtttgatttcctcatagaaactaaagataacatcttaacatatgtctctgagttg--tctcagaaacccggaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2606946 262 -   3067355 GAAAtga---gatgcagagaccccctttttagggacctgtgaa--ctcccaagcatggaaataaagcaaaatcctgagtttcttcaaggaaaattccaggcacctagctagctctgacaaataagtagcaacttgataagcaagaaggtaatagcagcc--taagacaacagccaaggaagttaagtgttccgaatagatttgatttcctcatagaaactaaagataacatcttaacatatgtctctgagttg--tctcagaaactcggaA
i colAng1.NW_012115566v1   C 0 I 8
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            13862  35 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26207978 604 +  26524999 I
e saiBol1.JH378357           190431 1162 -    242197 I
e otoGar3.GL873550            71235   0 +  18854210 C
e aotNan1.NW_018509740v1     258107 2696 -    457564 I
e cebCap1.NW_016107755v1     183153 2684 -   1771730 I
e calJac3.chr4             30041385 2662 + 171630274 I

a score=2398924.000000
s hg38.chr6_GL000254v2_alt   857542 523 +   4827813 ccccaccaaatgaatctgctggcatagacctcagaggacaggaaaat---gactgaactttataaccatcatcctttgttctaagtttcttcctgaggagcttggagaaagtaacaccttctaggcagttaacatttttctactggaccccaaatttttaaacaaaggttctcttccttaactaattgcaaattt-gggg--tttttttgtttttg----tttgagacaggcttttgctctgttacttaggccagaatgcagttgcagtcgtagctcactgcagcttaaccacccaggctcaagcaattctcctgcctcagcctctaatt-aaaaaaaattttgtgtgtgtagatacagagtcttgttatgtttcgcaggctggtctcaaactcttggccttaagggatcctctctccttggcctcccaaagtgctgggattacaagcatgac---ccacacctggccagaaaaatctttgaatctacctataacctgtaagtccctgattcaagatatcccacccttttagatcaa
s panTro5.chr6             29820204 524 + 175400573 ccccaccaaatgaatctgctggcatagacctcagaggacaggaaaat---gactgaactttataaacatcattctttgttctaagtttcttcctgaggagcttggagaaagtaacacctcctaggcagttaacatttttctactggaccccaaaattttaaacaaaggttctcttccttaactaattgcaaatttggggg--tttttttgtttttg----tttgagacaggcttttgctctgttacctaggccagaatgcagttgcaatcgtagctcactgcagctcaaccacccaggctcaagcaattctcctgcctcagcctctaatt-aaaaaaaattttgtgtgtgtagatacagagtcttgttatgtttcccaggctggtctcaaactcttggccttaagggatcctctctccttggcctcccaaagcgctgggattacaagcatgac---ccacacctggccagaaaaatctttgaatctacctataacctgtaagcccctgattcaagatatcccacccttttagatcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30054824 524 + 173848474 ccccaccaaatgaatctgctggcatagacctcagaggacaggaaaat---gactgaactttataaacatcattctttgttctaagtttcttcctgaggagcttggagaaagtaacacctcctaggcagttaacatttttctactggaccccaaaattttaaacaaaggttctcttccttaactaattgcaaatttggggg--tttttttgtttttg----tttgagacaggcttttgctctgttacctaggccagaatgcagttgcaatcgtagctcactgcagctcaaccacccaggctcaagcaattctcctgcctcagcctctaatt-aaaaaaaattttgtgtgtgtagatacagagtcttgttatgtttcccaggctggtctcaaactcttggccttaagggatcctctctccttggcctcccaaagcgctgggattacaagcatgac---ccacacctggccagaaaaatctttgaatctacctataacctgtaagcccctgattcaagatatcccacccttttagatcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5861346 523 +   6154872 ccccaccaaatgaatctgctggcatagacctcagaggacaggaaaat---gactgaactttataaccatcattctttgttctaagtttcttcctgagaagcttggagaaagtaacacctcctaggcagttaacatttttctactggaccccaaatttttaaacaaagattctcttccttaactaattgcaaattt-gggg--tttttttgtttttg----tctgagacaggcttttgctctgttacctaggccagaatgcagttgcaatcgtagctcactgcagctcaaccacccaggctcaagcaattctcctgacttagcctctaatt-aaaaaaaattttgtgtgtgtagatacagagtcttgttatgtttcccaggctggtctcaaactcttggccttaagggatcctctctccttggcctcccaaagcactcggattacaagcatgac---ccacacctggccagaaaaatctttgaatctacctataacctgtaagcccctgattcaagatatcccacccttttagatcaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74572340 526 + 122973662 ccccgccaaatgaatctgctggcatagacctcagaggacaggaaaat---gactgaactt--taaccatcattctttgttctaagtttcttcctgaggatcctggagaaagtaacacctcctagtcagttaacatttttctactggaccccaaatttttaaacaaagtttctcttccttaactaattgcaaattttgggg--tgtttttgtttttg----tttgagacaagcttttgctctgttacctaggccagaatgcagttgcaatcgtagttcactgcagctcagcctcccaggctcaagcaattctcctacctcagcctctaattaaaaaaaaaatttgtgtgtgtagatacagagtcttgttttgtttcccaggctggtctcaaactcttggccttaagggatcctctctccttggcctcccaaagcgctgggattacaagcatgacccaccacacctggccagaaaaatctttgaatctacctataacctgtaagcccctgattcaagatatcccacccttttagatcaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30052179 530 + 172585720 ccccaccaaatggatctgatggcatagacctcagaggacaggaaaatgacgactgaactt--taaccgtcattccttgttctaagtttcttcctgaggggcttggagaaagtaacacctcctagccagttaacatttttctactggaccccaaatttttaaacaaagcttctcttccttaaccagctgcaaattttggga-ctttttttgtttttgcttttttgagacaggcttttgctccgttacccaagccggaatgcagttgcaatcgtagctcactgcagctcaacctcccaggctcaagcagttctcctgcctcagcctctaatt-taaaaaaattttgtatgtgtagatacagggtcttgttatgtttcccaggctggtctcaaactcttggtcttaagggatcctctctccttggcctcccaaagcactgggattacaggcatgacccaccatacctgaccggaaaaatctctgaatctatctataacctgtaagccc--gattcaagatatccca-ccctttagatcaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29715024 530 - 170955103 ccccaccaaatggatctgatggcatagacctcagaggacaggaaaatgacgactgaactt--taaccgtcattccttgttctaagtttcttcctgaggggcttggagaaagtaacacctcctagccagttaacatttttctactggaccccaaatttttaaacaaagcttctcttccttaaccagctgcaaattttggga-ctttttttgtttttgcttttttgagacaggcttttgctccgttacccaagccggaatgcagttgcaatcgtagctcactgcagctcaacctcccaggctcaagcagttctcctgcctcagcctctaatt-taaaaaaattttgtatgtgtagatacagggtcttgttatgtttcccaggctggtctcaaactcttggtcttaagggatcctctctccttggcctcccaaagcactgggattacaggcatgacccaccatacctgaccggaaaaatctctgaatctatctataacctgtaagccc--gattcaagatatccca-ccctttagatcaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2760491 530 -   2996164 ccccaccaaatggatctgatggcatcgacctcagaggacaggaaaatgacgactgaactt--taaccgtcattccttgttctaagtttcttcctgaggggcttggagaaagtaacacctcctagccagttaacatttttctactggaccccaaatttttaaacaaagcttctcttccttaaccagctgcaaattttggga-ctttctttgtttttgcttttttgagacaggcttttgctccgttacccaagccggaatgcagttgcaatcgtagctcactgcagctcaacctcccaggctcaagcagttctcctgcctcagcctctaatt-taaaaaaattttgtatgtgtagatacagggtcttgttatgtttcccaggctggtctcaaactcttggtcttaagggatcctctctccttggcctcccaaagcactgggattacaggcatgacccaccatacctgaccggaaaaacctctgaatctatctataacctgtaagccc--gattcaagatatccca-ccctttagatcaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     513920 531 +    766320 ccccaccaaatagatctgatggcatagacctcagaggacaggaaaatgacgactgaactt--taatcgtcattctttgttctaagtttcttcctgaggggcgtggagaaagtaacacctcctagccagttaacatttttctactggaccccaaatttttaaacaaagcttctcttccttaaccagctgcaaattttggga-ttttttttgtttttgcttttttgagacaggcttttgctccgttacccaagccggaatgcagttgcaatcgtagctcactgcagctcaacctcccaggctcaagcagttctcctgcctcagcctctaatt-ttaaaaagttttgtacgtgtagatacagggtcttattatgtttcccaggctggtctcaaactcttggtgttaaaggagcctctctccttggcctcccaaagtgctgggattacaggcatgacccaccatacctgaccagaaaaatctctgaatctatctatagcctgtaagccc--gattcaagatatcccatccttttagatcaa
i cerAty1.NW_012002711v1   C 0 I 1863
s chlSab2.chr17            28969989 531 -  71996105 ccccaccaaatggatctgatggcatagacctcagaggacaggaaaatgatgactgaactt--taaccgtcattctttgttctaagtttcttcctgaggggcttggagaaagtaacacctcctagccagttaacatttttctaccggaccccaaatttttaaacaaagcttctcttccttaaccagctgcaaattttggga-ctttttttgtttttgcttttttgagaccggcttttgctccgttacccaagccggaatgcagttgcaaccgtagctcactgcagctcaacctcccgggctcaagcagttctcctgcctcagcttctaatt-taaaaaaattttgtacgtgcagatacagggtcttgttatgtttcccaggctggtctcaaactcttggtcttaagggagcctctctccttggcctcccaaagtgctgggattacaggcttgacccaccatacctgaccagaaaaatctttgaatctatctataacctataagccc--aattcaagatatcccacccttttagatcaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     146954 532 +    290775 ccccaccaaatagatctgatggcatagacctcagaggacaggaaaatgacgactgaactt--taatcgtcattctttgttctaagtttcttcctgaggggcgtggagaaagtaacacctcctagccagttaacatttttctactggaccccaaatttttaaacaaagcttctcttccttaaccagctgcaaattttgggatttttttttgtttttgcttttttgagacaggcttttgctccgttacccaagccggaatgcagttgcaatcgtagctcactgcagctcaacctcccaggctcaagcagttctcctgcctcagcctctaatt-ttaaaaagttttgtacgtgtagatacagggtcttattatgtttcccaggctggtctcaaactcttggtgttaaaggagcctctctccttggcctcccaaagtgctgggattacaggcatgacccaccatacctgaccagaaaaatctctgaatctatctatagcctgtaagccc--gattcaagatatcccatccttttagatcaa
i manLeu1.NW_012099233v1   C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            13862  35 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26207978 604 +  26524999 I
e saiBol1.JH378357           190431 1162 -    242197 I
e otoGar3.GL873550            71235   0 +  18854210 C
e aotNan1.NW_018509740v1     258107 2696 -    457564 I
e cebCap1.NW_016107755v1     183153 2684 -   1771730 I
e calJac3.chr4             30041385 2662 + 171630274 I
e colAng1.NW_012115566v1    2607208   8 -   3067355 I

a score=1069026.000000
s hg38.chr6_GL000254v2_alt   858065 301 +   4827813 aaccaatgtggaggccgggcacggtggctcacggctgtaatcccagccctttgggaag-caatgtgggcggatcatgaggtc---agatcaagaccatcctggctaacacggtgaaaccccatctctacaaaaaatac---------------aaaaaaaaaaattagccaggcgtggtggtgggtgcctatagtcctagctactcgggaggctgaggcaggagaatggcatgatcctgggaggcagagcttgcagtgagccaagatcacacagctgcactccagcctgggcaaccgagcaagactccatctc----------------aaaaaaa
s panTro5.chr6             29820728 301 + 175400573 aaccaatgtggaggccgggcacggtggctcacggctgtaatcccagccctttgggaga-caatgtgggcggatcacgaggtc---agatcaagaccatcctggctaacacggtgaaaccccatctctacaaaaaatac---------------aaaaaaaaaaattagccaggcgtggtggtgggtgcctatagtcctagctactcgggaggctgaggcaggagaatggcatgatcctggaaggcagagcttgcagtgagccaagatcacaccactgcactccagcctgggcaaccgagcaagactccatctc----------------aaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30055348 299 + 173848474 aaccaatgtggaggccgggcacggtggctcacggctgtaatcccagccctttgggaga-caatgtgggcggatcacgaggtc---agatcaagaccatcctggctaacacggtgaaaccccatctctacaaaaaatac----------------aaaaaaaaaattagccaggcgtggtggtgggtgcctatagtcctagctactcgggaggctgaggcaggagaatggcatgatcctggaaggcagagcttgcagtgagccaagatcacaccactgcactccagcctgggcaaccgagcaagactccatctc-----------------aaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5861869 301 +   6154872 aaccaatgtggaggccgggcacggtggctcacagctgtaatcccagccctttgggagg-caatgtgggcggatcacgaggtc---agatcaagaccatcctggctaacgcggtgaaaccccatctctacaaaaaatac---------------aaaaaaaaaaattagccaggcgtggtggtgggtgcctatagtcctagctactcgggaggctgaggcaggagaatggcatgatcctgggaggcagagcttgcagggagccaagatcacaccactgcactccagcctgggcaaccgagcaagactccatctc----------------aaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74572866 319 + 122973662 aaccaatgtggaggctggacgcggtggctcacggctgtaatcccagccctttgggagg-caatgtgggcagatcaagaggtcaggagatcaagaccatcctggctaacacggtgaaaccccatctctacaaaaaatac----------aaaaaaaaaaaaaaaattagccaggcgtggtggtgggcgcctgtagtcccagctactcagaaggctgaggcaggagaatggcgtgatcctgggaggcagagcttgcagtgagccaagatcacaccactgcactccatcctgggcaaccgagcaagactccatctcaaaaa------aaaaaaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30052709 324 + 172585720 aaccaatgtggaagctgggcgcggtggctcacgcctgtaatcccagcactttgggaggtcgatgtgggcagataatgaggtcaggagatcaagaccatcctggctaacacagtgaaatcctgtctctactaaaaatacaaaaaaaaaaaaaaaaaaaaaaaaaattaacagggcctggtggcgggagcctgtagtcccagctactcgggaggctgaggcaggagaatggcctgatcctgggaggcagagcttgcagtgagccaagatcgcaccactgcactccaacctgggtgacagagtgagactccatct------------caaaaaaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29715554 324 - 170955103 aaccaatgtggaagctgggcgcggtggctcacgcctgtaatcccagcactttgggaggtcgatgtgggcagataatgaggtcaggagatcaagaccatcctggctaacacagtgaaatcctgtctctactaaaaatacaaaaaaaaaaaaaaaaaaaaaaaaaattaacagggcctggtggcgggagcctgtagtcccagctactcgggaggctgaggcaggagaatggcctgatcctgggaggcagagcttgcagtgagccaagatcgcaccactgcactccaacctgggtgacagagtgagactccatct------------aaaaaaaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2761021 313 -   2996164 aaccaatgtggaagctgggcgcggtggctcacgcctgtaatcccagcactttgggaggtcgatgtgggcagataatgaggtcaggagatcaagactatcctggctaacacagtgaaatcctgtctctactaaaaatac-------------aaaaaaaaaacaattaacagggcctggtggcgggaacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgatcctgggaggcggagcttgcagtgagccgagatcgcaccactgcactccaacctgggtgacagagtgagactccatctc----------aaaaaaaaaaaaa
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28970520 319 -  71996105 aaccaatgtggaagccaggcgcggtggctcacgcctgtaatcctagcactttgggaggtcgatgtgggcagataatgaggtcaggagatcaagaccatcctggctaacacagtgaaaccctgtctctactgaaaatac-----------------acaaaaaaattaaccaggtctggtggcgggagcctgtagtcccagctactcggaaggctgaggcagaagaatggcctgatcctgggaggcagagcttgcagtgagccaagatcgcaccactgcactccaacctgggtgacagagtgagaccccgtctcaaaaaaaaaaaaaaaaaaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     147486 329 +    290775 aaccaatgtggaagccaggcgcggtggctgacgcctgtaatcccagcactttgggacgtcgatgtgggcagataatgaggtcaggagatcaagaccatcctggctaacacagtgaaaccctgtctctactgaaaatcc-------aaaaaaaaaaaaaaaaaaattaaccaggcctggtggcgggagcctgcagtcccagctactcgggaggctgaggcaggagaatggcctgatcctgggaggcagagcttgcagtgagccaagatcgcaccactgcactccaacctgagtgacagagtgagactccttctcaaaaaaaaaaaaaaaaaaaaaaa
i manLeu1.NW_012099233v1   C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            13862  35 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26207978 604 +  26524999 I
e saiBol1.JH378357           190431 1162 -    242197 I
e otoGar3.GL873550            71235   0 +  18854210 C
e aotNan1.NW_018509740v1     258107 2696 -    457564 I
e cebCap1.NW_016107755v1     183153 2684 -   1771730 I
e calJac3.chr4             30041385 2662 + 171630274 I
e colAng1.NW_012115566v1    2607208   8 -   3067355 I
e cerAty1.NW_012002711v1     514451 1863 +    766320 I

a score=5384346.000000
s hg38.chr6_GL000254v2_alt   858366 1185 +   4827813 aatgtggaacctctatgcactgatttccaatgttccttgtagcttctgcttttctgaaatttacccctgcc------------tttttttgtttcctgttttttgagacagggtcttgccgtgttgtccaggctggagtgcagtggcataatcatggctcagtgcagcctcaacctcctggattcaagggatcctctcacctcagccttctgagtggctgggagtacaggcatatgccaccatatttggctaatttttttatttcttgtagagttggggtctcactttgttgcccaggctgttcttgaactcctaggttcaagtgatcttcctgcctcagcctctcaaagtgctgggattacaggtgtgagccactgcacactgccttacccctgcctttaaaaacccATGTTACAAtagttagtcagacacgagcagggcaggaaagggcctccttccccaccaggaatgtcaggcaaccatcaggtgataggcggttgttaagctgtctctctaaaataatcattggtcacagcctgtgccagggaaaaacagtctcccaataaatagaaaaacctgaaac---taagatctcaggagttgggcaagtgggctcatgcatgggcactaag-ggagaaatgacagcatttaactggtttataaccttatagg--------------------------------aacactccctggtaagggaagaatgcctcaagtcagcatgcatactactccagtaaacataccgtgcatgcagcccctcccaagcactagcaggccactgtacatgcagacagcccaccccaagggaagattcaggggagaaggga-------ccctggaaccctgccaacatataaaaccctaagtc-aaggtcaaaaccacgcacttgatctctcaagttgcctgcttgg-cccccttccaagttggctttactttattttgttcctgctgtaaagctttttaataaacttttactcctgttctaaaatttgcttcggtctcttactctgctttatgcccctcagtcagattctttcttctgaggaggcaaaaattgaggttgctgcagacctgtacagattcgcagctgctaacata-ttttcATGCCATGTAACTCTGATACATTctgccgctaatacccttgcctgcaagacatcagggaggccaggacttgagtgtttagctgcctggtcctccctgcgtagtgtcctgcaa
s panTro5.chr6             29821029 1186 + 175400573 aatgcggaacccccatgcactgatttccaatgttccttgtagcttctgcttttctgaaatttacccctgcc------------tttttttgtttcctgttttttgagacagggtattgccgtgttgtccaggctggagtgcagtggcataatcatggctcagtgcagcctcgacctcctggattcaagggatcctctcacctcagccttctgagtggctgggagtacaggcatatgccaccatatttggctaatttttttatttcttgtagagttggggtctcactttgttgcccaggctgttcttgaactcctaggttcaagtgatcttcctgcctcagcctctcaaagtgctgggattacaggtgtgagccactgcacactgccttacccctgcctttaaaaacccATGTTACAAtagttagtcagacacgagcagggcaggaaagggcctccttccccaccaggaatgtcaggcaaccatcaggtgataggcggttgttaagctgtctctctaaaataatcactggtcacagcctgtgccagggaaaaacagtctcccaataaatagaaaaacctgaaac---taagatctcaggagttgggcaagtgggctcatgcatgggaactaagaggagaaatgacagcatttaactggtttataaccttatagg--------------------------------aacactccctggtaagggaagaatgcctcaagggagcatgcgtactactccagtaaacataccatgcatgcagcccctcccaagcactagcaggccactgtacatgcagacagcccaccccaagggaagattcaggggagaaggga-------ccctggaagcctgccaacatataaaaccctaagtc-aaggtcaaaaccacgcacttgatctctcaagttgcctgcttgg-cccccttccaagtgggctttactttattttgttcctgctgtaaagctttttaataaacttttactcctgttctaaaatttgcctcagtctcttactctgccttatgcccctcagtcagattctttcttctgaggaggcaaaaattgaggttgctgcagacctgtacagattcgcagctgctaacata-ttttcATGCCATGTAACTCTGATACATTctgccgctaatacccttgcctgcaagacatcagggaggccaggacttgagtgtttagctgcctggtcctccctgcgtagtgtcctgcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30055647 1185 + 173848474 aatgcggaacccccatgcactgatttccaatgttccttgtagcttctgcttttctgaaatttacccctgcc-------------ttttttgtttcctgttttttgagacagggtattgccgtgttgtccaggctggagtgcagtggcataatcatggctcagtgcagcctcgacctcctggattcaagggatcctctcacctcagccttctgagtggctgggagtacaggcatatgccaccatatttggctaatttttttatttcttgtagagttggggtctcactttgttgcccaggctgttcttgaactcctaggttcaagtgatcttcctgcctcagcctctcaaagtgctgggattacaggtgtgagccactgcacactgccttacccctgcctttaaaaacccATGTTACAAtagttagtcagacacgagcagggcaggaaagggcctccttccccaccaggaatgtcaggcaaccatcaggtgataggcggttgttaagctgtctctctaaaataatcactggtcacagcctgtgccagggaaaaacagtctcccaataaatagaaaaacctgaaac---taagatctcaggagttgggcaagtgggctcatgcatgggaactaagaggagaaatgacagcatttaactggtttataaccttatagg--------------------------------aacactccctggtaagggaagaatgcctcaagggagcatgcgtactactccagtaaacataccatgcatgcagcccctcccaagcactagcaggccactgtacatgcagacagcccaccccaagggaagattcaggggagaaggga-------ccctggaagcctgccaacatataaaaccctaagtc-aaggtcaaaaccacgcacttgatctctcaagttgcctgcttgg-cccccttccaagtgggctttactttattttgttcctgctgtaaagctttttaataaacttttactcctgttctaaaatttgcctcagtctcttactctgccttatgcccctcagtcagattctttcttctgaggaggcaaaaattgaggttgctgcagacctgtacagattcgcagctgctaacata-ttttcATGCCATGTAACTCTGATACATTctgccgctaatacccttgcctgcaagacatcagggaggccaggacttgagtgtttagctgcctggtcctccctgcgtagtgtcctgcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5862170 1181 +   6154872 aatgtggaacctccatgcactgatttccaatgttccttgtagcttctgcttttctgaaatttacccctgcc------------tttttttgtttcctgttttttgagacagggtcttgccgtgttgtccaggctggagtgcagtggcataatcatggctcagtgcagcctcgacctcctggattcaagggatcctctcacctcagccttctgagtggctgagagtacaggcatatgccaccatatttggctaatttttttatttcttgtagagttggggtctcactttgttgcccaggctgttcatgaactcctaggttcaagtgatcttcctgcctcagcctctcaaagtgctgggattacaggtgtgagccactgcacactgccttacccctgcctttaaaaacccATGTTACAAtagttagtcagacacgagcagggcaggaaa-ggcctccttccccaccaggaatgtcaggcaaccatcaggtgataggcggttgttaagctgtctctctaaaataatcattggtcacagcctgtgccagggaaaaacagtctcccaataaatagaaaaacctgaaac-------atctcaggagttgggcaagtgggctcatgcatgggcactaagaggagaaatgacagcatttaactggtttataaccttatagg--------------------------------aacactccctggtaagggaagaatgcctcaagggagcatgcgtactactccagtaaacataccatgcatgcagcccctcccaagcactagcaggccactgtacatgcagacagcccaccccaagggaagattcaggggagaaggga-------cgctggaagcctgccaacatataaaaccctaagtc-aaggtcaaaaccacgcacttgatctctcaagttgcctgcttgg-cccccttccaagtgggctttactttattttgttcctgctgtaaagctttttaataaacttttactcctgttctaaaatttgcctcggtctcttactctgccttatgcccctcagtcagattctttcttctgaggaggcaaaaattgaggttgctgcagacctgtacagattcgcagctgctaacata-ttttcATGCCATGTAACTCTGATACATTctgccgctaatacccttgcctgcaagacatcagggaggccaggacttgagtgtttagctgcctggtcctccctgcgtagtgtcctgcaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74573185 1180 + 122973662 aatgtggaacctccatgcactgatttccaatgttccttgtagcttctacctttctgaaatttacccctgcc------------tttttttgtttcctgttttttgagacagagtcttgccgtgttgtccaggctggagtgcagtggcataatcatggctcagtgaagcctcaacctcctgggctcaagggatcctctcacttcagccttctgagtggctgggagtacaggcatatgccactaaatttggctaattttttgatttcttgtagagttggggtctcactttgttgcccaggctgttcttgaactcctaggttcaagtgatcttcctgcctcaggctctcaaagtgttgggattacaggtgtgagccactgcacactgccttacccctgcctTAAAAAACCCATGTTACAA----Cagtcagacacgagcagggcaggaaagggcctccttccctaccaggaatgtcaggcaaccatcaggtgataggtggttgtcaagctgtcactctaaaataatcattggtcacagcctgtgccagggaaaaacagtctctcaataaatagaaaaacctgaaactggtaagatctcaggagttgggcaagtgtactcatgcatgggtactaagaggggaaatggcagcatttaactgttttataaccttatagg--------------------------------aacactccctggtaagggaagaatgcctcaagggagcatgcgtactactccagtaaacacaccatgcatgtggcccctcccaagcactagcaggccactgtacatgcagacagcccacgccaagggaagattcaggggagaaggga-------ccctggaagcacgacaacatataaaaccctaagtc-aaggtcaaaaccatgcacttgatctctcaagttgcctgcttgg-cccccttcccagtggg-----ctttattttgttcctgctgtaaagctttttaataaacttttactcctgttctaaaatttgcatcagtctcttactctgccttatgcccctcagtcagattctttcttctgaggaggcaaaaattgaggttgctgcagacctgtacagattggcagctgctaacATA-TTTTTATGCCATGTAACTCTGATACATTctgccgctaacacccttgactgcaagacatcagggaggccaggacttgaccatttagctgcctggtcctccctgcatggtgtcctgcaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30053033 1192 + 172585720 aatgtggaacctccatgcattgatttacaatgttccttgtagcttctgcttttctgaagtttacccctgcc-----ttttgttttgttttgttttctgttttttgagacagggtcttgccatgttgtccaggttggagtgcagtggcacaatcatggctcagtgcagcctcgacctcctgggcccaagggatcctctcacctcagccttctgagtggctgggagtacaggcatgtgccaccatgtttggctaattttttgatttcttgtagagttgcagtctcactttgttgcccaggctgttcttgaactcctgggttcaagtgatcttcctgcctcagcctctcaaagtgctgggattacaggtgtgagccactgcacactgccttacccctgcctTTAAAAACCTGTGCTACAgtagttagtcagacatgagcagggcaggaaagggcctccttccccaccaggaatgacaggcaaccatcaggtgataggcggttgttaagctgt--ctctaaaataataattggtcacagcccgtgccaggaaaaaacagcctcccaataaatagaaaaacctgaaactgataagatctcaggagttgggcaagtgggctcatgcatggagactaagaggggaaatggcagcg-tcaactggtttataaccttataat--------------------------------aagactccctggtaagggaagaatgcctcaagggagcatgcctacaactccagtaaacataccatgcatgtggcccctcccaagcactagcaggccactgtccatgcagacagcccaccccaagggaagaatca-gggagaaggga-------ccctggaagcatgtcaacatataaaaccctaagtc-aaggtc-aagccatgcacttgatctcccaagatgctcgcttcg-cccccttccaagtgggctttacttccttttgttcctgctgtaaagctttttaataaacttttactcctgttctaaaatttgcctccgtctcttactctgccttatgcccctcagtcagattctttcttctgaggaggcaaaaactgaggttgctgcagacccatacagattcccagctgctaacatactttttaTGCCATGTAAGTCTGATACATTctgccactaacacccgtgcctgcaagacatcagggaggccaggatttgagcatttagctgcctggtcctccctgcgtggtgtcctgcaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29715878 1192 - 170955103 aatgtggaacctccatgcattgatttacaatgttccttgtagcttctgcttttctgaagtttacccctgcc-----ttttgttttgttttgttttctgttttttgagacagggtcttgccatgttgtccaggttggagtgcagtggcacaatcatggctcagtgcagcctcaacctcctgggcccaagggatcctctcacctcagccttctgagtggctgggagtacaggcatgtgccaccatgtttggctaattttttgatttcttgtagagttgcagtctcactttgttgcccaggctgttcttgaactcctgggttcaagtgatcttcctgcctcagcctctcaaagtgctgggattacaggtgtgagccactgcacactgccttacccctgcctTTAAAAACCTGTGCTACAgtagttagtcagacatgagcagggcaggaaagggcctccttccccaccaggaatgacaggcaaccatcaggtgataggcggttgttaagctgt--ctctaaaataataattggtcacagcccgtgccaggaaaaaacagcctcccaataaatagaaaaacctgaaactgataagatctcaggagttgggcaagtgggctcatgcatggagactaagaggggaaatggcagcg-tcaactggtttataaccttataat--------------------------------aagactccctggtaagggaagaatgcctcaagggagcatgcctacaactccagtaaacataccatgcatgtggcccctcccaagcactagcaggccactgtccatgcagacagcccaccccaagggaagaatca-gggagaaggga-------ccctggaagcatgtcaacatataaaaccctaagtc-aaggtc-aagccatgcacttgatctcccaagatgctcgcttcg-cccccttccaagtgggctttacttccttttgttcctgctgtaaagctttttaataaacttttactcctgttctaaaatttgcctccgtctcttactctgccttatgcccctcagtcagattctttcttctgaggaggcaaaaactgaggttgctgcagacccatacagattcccagctgctaacatactttttaTGCCATGTAAGTCTGATACATTctgccactaacacccgtgcctgcaagacatcagggaggccaggatttgagcatttagctgcctggtcctccctgcgtggtgtcctgcaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2761334 1197 -   2996164 aatgtggaacctccatgcattgatttacaatgttccttgtagcttctgcttttctgaagtttacccctgcctttTGttttgttttgttttgttttctgttttttgagacagggtcttgccatgttgtccaggttggagtgcagtggcacaatcatggctcagtgcagcctcgacctcctgggcccaagggatcctctcacctcagccttctgagtggctgggagtacaggcatgtgccaccatgtttggctaattttttgatttcttgtagagttgcagtctcactttgttgcccaggctgttcttgaactcctgggttcaagtgatcttcctgcctcagcctctcaaagtgctgggattacaggtgtgagccactgcacactgccTTACCCCTGCCGTTAAAAACCTGTGCTACAgtagttagtcagacatgagcagggcaggaaagggcctccttccccaccaggaatgacaggcaaccatcaggtgataggcggttgttaagctgt--ctctaaaataataattggtcacagcccgtgccaggaaaaaacagcctcccaataaatagaaaaacctgaaactgataagatctcaggagttgggcaagtgggctcatgcatggagactaagaggggaaatggcagcg-tcaactggtttataaccttataat--------------------------------aagactccctggtaagggaagaatgcctcaagggagcatgcctacaactccagtaaacataccatgcatgtggcccctcccaagcactagcaggccactgtccatgcagacagcccaccccaagggaagaatca-gggagaaggga-------ccgtggaagcatgtcaacatataaaaccctaagtc-aaggtc-aagccatgcacttgatctcccaagatgctcgcttcg-cccccttccaagtgggctttacttccttttgttcctgctgtaaagctttttaataaacttttactcctgttctaaaatttgcctccgtctcttactctgccttatgcccctcagtcagattctttcttctgaggaggcaaaaactgaggttgctgcagacccatacagattcccagctgctaacatactttttaTGCCATGTAAGTCTGATACATTctgccactaacacccgtgcctgcaagacatcagggaggccaggatttgagcatttagctgcctggtcctccctgcgtggtgtcctgcaa
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28970839 1226 -  71996105 aaagtggaacctccatgcatcgatttacaatgttccttgtagcttctgtttttctgaagtttacccctaccttttgttttgttttgttttgttttctgatttttgagacagggtcttgccatgttgtccaggttggagtgcagtggcacaatcacggctcagtgcagcctcaacctcctgggcccaagggatcctctcacctcagccttctgagtggctgggagtacaggcatgtgccaccatgtttggctaattttttgatttcttgtagagttgcggtctcactttgttgcccaggctgttcttgaactcctgggttcaagtgatcttcctgcctcagcctctcaaagtgctgggattacaggtgtgagccactgcacactgccttacccctgcctTTAAAAACCTGTGCTACAgtagttagtcagacacgagcagggcaggaaagggcctccttcctcaccaggaatgacaggcaaccatcaggtgataggcggttgttaagctgt--ctctaaaataataattggtcacagcctgtgccaggaaaaaacagtctcccaataaatagaaaaaactgaaactggtaagatctcaggtgttgggcaagtgggctcatgcatggagacta--aggggaaatggcagcg-ttaactggtttataaccttataataagactccctggaaaaaaaaaaaaaaaaaaaaaagactccctgggaagggaagaatgcctcaagggagcatacgtacaactccagtaaacataccatgcatgtggcccctcccaagcact-gcaggccactgtccatgcagacagcccaccccaagggaagaatca-gggagaaggga-------ccctggaagcatgccaacatataaaaccctaagtc-aaggtc-aagccatgcacttgatctcccaagttgcccgctttg-cccccttccaagtgggctttacttccctttgttcctgctgtaaagctttttaataaacttttactcctgttctaaaatttgcctccatctcttactctgccttacgcccctcagtcagattctttcttctgaggcggcaaaaactgaggttgctgcagacccgtacagattcccagctgctagcatactttttaTGCCATGTAAGTCTGATACATTctgccactaacacccgtgcctgcaagacatcagggaagccaggatttgagcatttagctgcctggtcctccctgcatggtgtcctgcaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     147815 1193 +    290775 aaagtggaacctccatgcatcgatttacaatgttccttgtagcttctgcttttctgaagtttacccctgcc-----ttttgttttgttttgttttctgttttttgagacagggtcttgccatgttgtccaggttggagtgcagtggcacaatcacggctcagtgcagcctcaacctcctgggcccaagggatcctctcacctcagccttctgagtggctgggagtacaggcatgtgccaccatgtttggctaattttttgatttcttgtagagttgcggtctcactttgttgcccaggctgttcttgaactcctgggttcaagtgatcttcctgcctcagcctctcaaagtgctgggattacaggtgtgagccactgcacactgccttacccctgcctTTAAAAACCTGTGCTACAgtagttagtcagacacgagcagggcaggaaagggcctcctcccccaccaggaataacaggcaaccatcaggtgacaggcggttgttaagctgt--ctctaaaataataattggtcacagcccgtgccaggaaaaaacagtctcccaataaatagaaaaaactgaaactgataagatctcaggagttgggcaagtgggctcatgcatggggactaagaggggaaatggcagcg-ttaactggtttataaccttataat--------------------------------aagactccctggtaagggaagaatgcctcaagggagcatgcatacaactccagtaaacataccatgcatgtggcccctcccaagcactagcaggccactgtccatgcagacagcccactccaagggaagaatca-gggagaaggga-------ccctggaagtatgccaacatataaaaccctaagtc-aaggtc-aagccatgcacttgatctcccaagttgcccgcttcaccccccttccaagtgggctttacttccttttgttcctgctgtaaagctttttaataaacttttacttctgttctaaaatttgcctccgtctcttactctgccttatgcccctcagtcagattctttcttctgaggaggcaaaaactgaggttgctgcagacccatacagattcccagctgctaacatactttttaTGCCATGTAAGTCTGATACATTctgccactaacacccatgcctgcaagacatcagggaggccaggatttgagcatttagctgcctggtcctccctgcgtggtgtcctgcaa
i manLeu1.NW_012099233v1   C 0 C 0
s saiBol1.JH378357           191593 1189 -    242197 aatgtggaacctgtatgcattgatttacaatgttccttgtagcttctgcttttctgaaatttacccttgac--tttTTTGGTTTTGGTTTGGTT--TGGtttttgagacatggtcttgctgtgttgtccagactggagtgcggtggcacaatcatggttcactgcagcctcagcctcctgggctcaagggatcctaccac-tcagccttctgagtggctgggagtagaggtgtgtgccaccatatttggctaattttcttatttcttgtagagttggggtcccattttgttgcccaggctgttcttgaactcctgggctcaaatgatcctcctgcctcagcctcctaaaatgctaggattacaagtgtgagctactgcacgctgccTTACCCCTGCCTTTAAAAACC-GTGTTATAGtagat----agacacgagcagggcaggaaagggcc-ccccctccaccatgaatgtcaggcaaccatcaggtgacacgcagttgttaagctgtctctctaaaataataattggtctcagcccatgccaggg-aaaatagtctcccaagaaacagaaaaagttgaaactaatcagatctcagaaattgggcaagtggactcatgcataggcactaagagggaaaacggcgagt-ttaactggtttataaccttgcagg--------------------------------aacactcactggtaagggaagaatggcttaagggagcatgcgtaca---ccagtaagcacac--tgcaggcagcctctctccagcactagcaggccattgcgcatgcagacagcccaccccaagggaagaattg-gggtgaagggacacaagcccccagaaggatgccaacatatacaaccctaagtcaaaggtc-aaactgtgcacttgatctctcaagttgccctcttgg-ctcccttctgagtggacttgattttcttttatttctgctttaaagctttttaataaacttttactcctgctcttaaatttgcctcagtctcttactctgctttatgcccctcagtcagattctttcttctgaggaggcaaaaattgaggttgctgcaaacccatacagcgtcgcagctgctaacaca-TTTTTATGCCGTGTAACTCTGATACATTCTGCTGCTaacacccttgcctgcaagatatcagggagaccaggatttgagcatttagctgtctggtcctcattgcatgatgccctgcga
i saiBol1.JH378357         I 1162 I 312
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            13862   35 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26207978  604 +  26524999 I
e otoGar3.GL873550            71235    0 +  18854210 C
e aotNan1.NW_018509740v1     258107 2696 -    457564 I
e cebCap1.NW_016107755v1     183153 2684 -   1771730 I
e calJac3.chr4             30041385 2662 + 171630274 I
e colAng1.NW_012115566v1    2607208    8 -   3067355 I
e cerAty1.NW_012002711v1     514451 1863 +    766320 I

a score=3795.000000
s hg38.chr6_GL000254v2_alt   859551 2 +   4827813 ca
s panTro5.chr6             29822215 2 + 175400573 cc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30056832 2 + 173848474 cc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863351 2 +   6154872 cc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574365 2 + 122973662 tc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054225 2 + 172585720 tc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717070 2 - 170955103 tc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762531 2 -   2996164 tc
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972065 2 -  71996105 tc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149008 2 +    290775 tc
i manLeu1.NW_012099233v1   C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            13862 35 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26207978 604 +  26524999 I
e saiBol1.JH378357           192782 312 -    242197 I
e otoGar3.GL873550            71235 0 +  18854210 C
e aotNan1.NW_018509740v1     258107 2696 -    457564 I
e cebCap1.NW_016107755v1     183153 2684 -   1771730 I
e calJac3.chr4             30041385 2662 + 171630274 I
e colAng1.NW_012115566v1    2607208 8 -   3067355 I
e cerAty1.NW_012002711v1     514451 1863 +    766320 I

a score=53405.000000
s hg38.chr6_GL000254v2_alt   859553 9 +   4827813 aatgccttt
s panTro5.chr6             29822217 9 + 175400573 gatgccttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30056834 9 + 173848474 gatgccttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863353 9 +   6154872 aatgccttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574367 9 + 122973662 aatgccttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054227 9 + 172585720 aatgccttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717072 9 - 170955103 aatgccttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762533 9 -   2996164 aatgccttt
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972067 9 -  71996105 aatgccttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149010 9 +    290775 aatgccttt
i manLeu1.NW_012099233v1   C 0 C 0
s saiBol1.JH378357           193094 9 -    242197 aatgccttt
i saiBol1.JH378357         I 312 C 0
s cebCap1.NW_016107755v1     185837 9 -   1771730 aatgccttt
i cebCap1.NW_016107755v1   I 2684 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            13862 35 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26207978 604 +  26524999 I
e otoGar3.GL873550            71235 0 +  18854210 C
e aotNan1.NW_018509740v1     258107 2696 -    457564 I
e calJac3.chr4             30041385 2662 + 171630274 I
e colAng1.NW_012115566v1    2607208 8 -   3067355 I
e cerAty1.NW_012002711v1     514451 1863 +    766320 I

a score=618893.000000
s hg38.chr6_GL000254v2_alt   859562 80 +   4827813 ctttctattggtgcaatccttggtgtaagtatctggttttattgcaccaggcaagcagaccccagtttggttctataaca
s panTro5.chr6             29822226 80 + 175400573 ctttctattggtgcaatccttggtgtaagtatctggttttattgcaccaggtaagcagaccccagtttggttctataaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30056843 80 + 173848474 ctttctattggtgcaatccttggtgtaagtatctggttttattgcaccaggtaagcagaccccagtttggttctataaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863362 80 +   6154872 ctttctattggtgcaatccttggtgtaagtatctggttttattgcaccaggtaagcagaccccagtttggttctataaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574376 80 + 122973662 ctttctattggtgcaatccttggtgtaggtatctggttttattgcaccaggcaagcagaccccagtttggttctataaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054236 80 + 172585720 ctttctgttggcgcaatccttggtgtaggtatctggttttattgcaccaggcaagcagaccccagcttggttctataaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717081 80 - 170955103 ctttctgttggcgcaatccttggtgtaggtatctggttttattgcaccaggcaagcagaccccagcttggttctataaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762542 80 -   2996164 ctttctgttggcgcaatccttggtgtaggtatctggttttattgccccaggcaagcagaccccagcttggttctataaca
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972076 80 -  71996105 ctttctgttggtgcaatccttggtgtaggtatctggttttattgcaccaggcaagcagaccccagcttgattctgtaaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149019 80 +    290775 ctttctgttggcgcaatccttggtgtaggtacctggttttattgcaccaggcaagcagaccccagcttggttctataaca
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chr4             30044047 80 + 171630274 ctttctattgctgcaatccttggtgtagatatttggttttattgcaccaggcaagcagactccagtttggttctataaca
i calJac3.chr4             I 2662 C 0
s saiBol1.JH378357           193103 80 -    242197 ctttctactgctgcaatccttgttgtaggtatctggttttattgcaccaggcaagcagactcaggtttggttctataaca
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     185846 80 -   1771730 ctttctattgctgcaatccttgttgtaggtatctggttttattgcaccaggcaagctgactccggtttggttctataaca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     260803 80 -    457564 ctttctattgctgcaatccttggtgtagggatctggttttattgcaccaggcaagcagactccggtttgcttctataaca
i aotNan1.NW_018509740v1   I 2696 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            13862 35 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26207978 604 +  26524999 I
e otoGar3.GL873550            71235  0 +  18854210 C
e colAng1.NW_012115566v1    2607208  8 -   3067355 I
e cerAty1.NW_012002711v1     514451 1863 +    766320 I

a score=213102.000000
s hg38.chr6_GL000254v2_alt   859642 25 +   4827813 GAAAAGGCTAAAGACAAAAATAAGC
s panTro5.chr6             29822306 25 + 175400573 GAAAAGGCTAAAGACAAAAATAAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30056923 25 + 173848474 GAAAAGGCTAAAGACAAAAATAAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863442 25 +   6154872 GAAAAGGCTAAAGACAAAAATAAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574456 25 + 122973662 GAAAAGGCTAAAGACAGAAATAAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054316 25 + 172585720 GAAAAGGCTAAAGACAGAAATAAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717161 25 - 170955103 GAAAAGGCTAAAGACAGAAATAAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762622 25 -   2996164 GAAAAGGCTAAAGACAGAAATAAGC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972156 25 -  71996105 GAAAAGGCTAAAGACAGAAATAAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149099 25 +    290775 GAAAAGGCTAAAGACAGAAATAAGC
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chr4             30044127 25 + 171630274 GAAAAGGCTAAAGACAGAAATAAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           193183 25 -    242197 GAAACAGCTAAAGACAGAAATAAGC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     185926 25 -   1771730 GAAAAGGCTAAAGACAGAAATAAGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     260883 25 -    457564 GAAAAGGCTAAAGACAGAAATAAGC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            71235 21 +  18854210 GAAAACACGAAAGACAGGAAC----
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                75580 1696 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            13862 35 +    102524 I
e proCoq1.NW_012152574v1     570260 2274 +    730504 I
e canFam3.chr35            26207978 604 +  26524999 I
e colAng1.NW_012115566v1    2607208  8 -   3067355 I
e cerAty1.NW_012002711v1     514451 1863 +    766320 I

a score=300791.000000
s hg38.chr6_GL000254v2_alt   859667 28 +   4827813 ATGTTGTGCATTAAGATAGGGAGATGTG
s panTro5.chr6             29822331 28 + 175400573 ATGTTGTGCATTAAGATAGGGAGATGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30056948 28 + 173848474 ATGGTGTGCATTAAGATAGGGAGATGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863467 28 +   6154872 ATGTTGTGCATTAAGATAGGGAGATGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574481 28 + 122973662 ATGTTGTGCATTAAGATAGGGAGATGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054341 28 + 172585720 GTGTTGTGCATTAAGATAGGGAGATGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717186 28 - 170955103 ATGTTGTGCATTAAGATAGGGAAATGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762647 28 -   2996164 ATGTTGTGCATTAAGATAGGGAGATGTA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972181 28 -  71996105 ATGTTGTGCATTAAGATAGGGAGATGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149124 28 +    290775 ATGTTGTGCATTAAGATAGGGAGATGTA
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chr4             30044152 28 + 171630274 ATGTTGTGCATTAAGATAGGGAGATGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           193208 28 -    242197 ATGTTGTGCATTAAGATAGGGAGATGTG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     185951 28 -   1771730 ATGTTGTGCCTTAAGATAGGGAGATGTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     260908 28 -    457564 ATGTTATGCATTAAGATAGGGAGATGTG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                77276 27 + 123392446 ATGCTGTGCATTAAGAT-GGGAGCTGTA
i micMur3.chr6             I 1696 C 0
s proCoq1.NW_012152574v1     572534 27 +    730504 ATGCTGTGCATTAAGAT-GGGAGTTGTA
i proCoq1.NW_012152574v1   I 2274 C 0
s otoGar3.GL873550            71256 26 +  18854210 --GTTATGCATTAAGATGGGGAGGTGTA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            13862 35 +    102524 I
e canFam3.chr35            26207978 604 +  26524999 I
e colAng1.NW_012115566v1    2607208  8 -   3067355 I
e cerAty1.NW_012002711v1     514451 1863 +    766320 I

a score=295450.000000
s hg38.chr6_GL000254v2_alt   859695 28 +   4827813 GGGGAAGGAGTTACACCGAGGAGCAAAA
s panTro5.chr6             29822359 28 + 175400573 GAGGAAGGAGTTACACCGAGGAGCAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30056976 28 + 173848474 GAGGAAGGAGTTACACCGAGGAGCAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863495 28 +   6154872 GGGGAAGGAGTTACACCGAGGAGCAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574509 27 + 122973662 GGGGAA-GAGTTATACCGGGGAGCAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054369 28 + 172585720 GGGGAAGGAGTTACACCAGGGAGCAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717214 28 - 170955103 GGGGAAGAAGTTACACCAGGGAGCAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762675 28 -   2996164 GGGGAAGAAGTTACACCAGGGAGCAAAA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972209 28 -  71996105 GGGGAAGGAGTTACACCAGGGAGCAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149152 28 +    290775 GGGGAAGGAGTTACACCAGGGAGCAAAA
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chr4             30044180 28 + 171630274 AGAAAAAAAGTTACACCAGGGAGCAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           193236 28 -    242197 GGGAAAGGAGTTACAACAGGGAGCAAAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     185979 28 -   1771730 GGGAAAGGAGTTACAACAGGGAGCAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     260936 28 -    457564 GGAAAAGGAGTTACACCAGGGAGCAAAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                77303 28 + 123392446 GGGGAAGGAATCACACCAGGGAGCAAAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     572561 28 +    730504 GGGGAAGCAGTTACACCAGGCAGCAAAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            71282 26 +  18854210 --GGAAGGAGTTACACAAGGGAGCAAAA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            13897 24 +    102524 GGGCTAAGGGCTGCACCA---AGCAAA-
i dasNov3.JH582591         I 35 C 0
e mm10.chr17               57906564 5566 -  94987271 I
e canFam3.chr35            26207978 604 +  26524999 I
e colAng1.NW_012115566v1    2607208  8 -   3067355 I
e cerAty1.NW_012002711v1     514451 1863 +    766320 I

a score=743135.000000
s hg38.chr6_GL000254v2_alt   859723 66 +   4827813 TGATTAAGCAGGAAGGTAGAGATTATTTCAGAAAGATAC----AGA--AGCTACTGAATTGAATACAACCA-G-
s panTro5.chr6             29822387 67 + 175400573 TGATTAAGGAGGAAGGTAGAGATTATTTCAGAAAGATAC----AGA--AGCTACTGAACTGAATACAACCAGG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057004 65 + 173848474 TGATTAAGGAGGAAGGTAGAGATTATTTCAGAAAGATAC----AGA--AGCTACTGAATTGAATACAACCA---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863523 64 +   6154872 TGATTAAGGAGGAAGGTAGAGATTATTTCAG-AAGATAC----AGA--AGCTACTGAATTGAATACAACCA---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574536 65 + 122973662 TGATTAAGGAGGAAGGTAGAGATTATTTCAGAAAGATAC----AGA--AGCTACTGAATTGAATACAACCA---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054397 65 + 172585720 TGATTAAGGAGGAAGGCAGAGATTATTTCAGAAAGATAC----AGA--AACTACTGAATTGAACACAACTA---
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29717242 65 - 170955103 TGATTAAGGAGGAAGGCAGAGATTATTTCAGAAAGATAC----AGA--AACTACTGAATTGAACACAACTA---
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2762703 65 -   2996164 TGATTAAGGAGGAAGGCAGAGATTATTTCAGAAAGATAC----AGA--AACTACTGAATTGAACACAACTA---
i macNem1.NW_012011356v1   C 0 I 1
s chlSab2.chr17            28972237 65 -  71996105 TGATTAAGGAGGAAAGTAGAGATTATTTCAGAAAGATAC----AGA--AACTACTGAATTGAACACAACTA---
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012099233v1     149180 65 +    290775 TGATTAAGGAGGAAGGTAGAGATTATTTCAGAAAGATAC----AGA--AACTACTGAATTGAACACAACTA---
i manLeu1.NW_012099233v1   C 0 I 1
s calJac3.chr4             30044208 65 + 171630274 TGATTAAGGAGGAAGGTATAGATTATTTCAGAAAGATAC----AGA--AGCTACTGAATTGAATACAGTCA---
i calJac3.chr4             C 0 I 1
s saiBol1.JH378357           193264 65 -    242197 TGATTAAGGACGAAGGTATAGATTATTTCAGAAAGATAC----AGA--AGCTACTCAATTGAATAAAATCA---
i saiBol1.JH378357         C 0 I 1
s cebCap1.NW_016107755v1     186007 65 -   1771730 TGATTAAGGAGGAAGGTATAGATTATTTCAGAAAGATAC----AGA--AGCTACTGAATTGAATACAATAA---
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018509740v1     260964 69 -    457564 TGATTAAGGAGGAAAGAATAGATTATTTCATAAAGATACAGTAAGA--AGCTACTGAATTGAATACAATCA---
i aotNan1.NW_018509740v1   C 0 I 1
s micMur3.chr6                77331 65 + 123392446 CGATTAAGAAGGAAGGTATAGATAGTTCCAGAAAGATAT----AGA--AGCTACTGAATTGGATACAACCA---
i micMur3.chr6             C 0 I 1
s proCoq1.NW_012152574v1     572589 65 +    730504 TGATTAAGGAGGAAGGTATAGATTGTTTCAGAAAGATAT----AGA--AGCTACTGAACTGGATACAACCA---
i proCoq1.NW_012152574v1   C 0 I 1
s otoGar3.GL873550            71308 65 +  18854210 TTATTAAAGAGGAAGGTATAGAATGTTTCAGAAAGATAT----AGA--AGCCACTCAATTGGATACAACCA---
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26208582 62 +  26524999 TGATTAAGGAGTAAGGCAGAGATGTT-----AGGGATGC----AAGTCAGCTACTGAATTGGGTAACACTG---
i canFam3.chr35            I 604 I 1
s dasNov3.JH582591            13921 66 +    102524 CAATGGAGGAGGAAGGTGTGGACGCTTGTGAAGGTATAG----AGA--AGCTACTCAACTGCACACAACTG--G
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57906564 5566 -  94987271 I
e colAng1.NW_012115566v1    2607208  8 -   3067355 I
e cerAty1.NW_012002711v1     514451 1863 +    766320 I

a score=-1400.000000
s hg38.chr6_GL000254v2_alt   859789 4 +   4827813 aaaa-
s panTro5.chr6             29822454 4 + 175400573 aaaa-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057069 3 + 173848474 -Gaa-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863587 4 +   6154872 Gaaa-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574601 1 + 122973662 ---G-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054463 2 + 172585720 --aa-
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29717308 2 - 170955103 --aa-
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2762769 1 -   2996164 ---A-
i macNem1.NW_012011356v1   I 1 C 0
s chlSab2.chr17            28972303 1 -  71996105 ---A-
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012099233v1     149246 1 +    290775 ---A-
i manLeu1.NW_012099233v1   I 1 C 0
s colAng1.NW_012115566v1    2607216 4 -   3067355 aaag-
i colAng1.NW_012115566v1   I 8 C 0
s micMur3.chr6                77397 4 + 123392446 AAAA-
i micMur3.chr6             I 1 I 27
s proCoq1.NW_012152574v1     572655 4 +    730504 AAAA-
i proCoq1.NW_012152574v1   I 1 I 4
s otoGar3.GL873550            71374 4 +  18854210 AAAA-
i otoGar3.GL873550         I 1 C 0
s canFam3.chr35            26208645 4 +  26524999 AAAA-
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            13987 4 +    102524 -AAAG
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57906564 5566 -  94987271 I
e saiBol1.JH378357           193329 1 -    242197 I
e aotNan1.NW_018509740v1     261033 1 -    457564 I
e cebCap1.NW_016107755v1     186072 1 -   1771730 I
e calJac3.chr4             30044273 1 + 171630274 I
e cerAty1.NW_012002711v1     514451 1863 +    766320 I

a score=31677.000000
s hg38.chr6_GL000254v2_alt   859793 6 +   4827813 aaaaaa--
s panTro5.chr6             29822458 6 + 175400573 aaaaaa--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057072 6 + 173848474 aaaaaa--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863591 6 +   6154872 aaaaaa--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574602 6 + 122973662 AAAAAA--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054465 6 + 172585720 aaaaaa--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717310 6 - 170955103 aaaaaa--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762770 6 -   2996164 AAAAAA--
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972304 6 -  71996105 AAAAAA--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149247 6 +    290775 AAAAAA--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2607220 6 -   3067355 aaaaaa--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30044274 4 + 171630274 --AAAA--
i calJac3.chr4             I 1 C 0
s saiBol1.JH378357           193330 4 -    242197 --AAAA--
i saiBol1.JH378357         I 1 C 0
s cebCap1.NW_016107755v1     186073 4 -   1771730 --AAAA--
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018509740v1     261034 4 -    457564 --AAAA--
i aotNan1.NW_018509740v1   I 1 C 0
s proCoq1.NW_012152574v1     572663 6 +    730504 AAACCA--
i proCoq1.NW_012152574v1   I 4 C 0
s otoGar3.GL873550            71378 4 +  18854210 --ACag--
i otoGar3.GL873550         C 0 I 10824
s canFam3.chr35            26208649 1 +  26524999 --A-----
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            13991 6 +    102524 --AGGAGG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                77401 27 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e cerAty1.NW_012002711v1     514451 1863 +    766320 I

a score=91851.000000
s hg38.chr6_GL000254v2_alt   859799 17 +   4827813 aaaaaaaaGG-----ATCCCTT
s panTro5.chr6             29822464 17 + 175400573 aaaaaaaaGG-----ATCCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057078 17 + 173848474 aaaaaaaaga-----aTCCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863597 17 +   6154872 aaaaaaaaGG-----ACCCCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574608 17 + 122973662 AAAAAAAAGG-----ATCCCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054471 17 + 172585720 aaaaaaaaaG-----ATGCCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717316 17 - 170955103 aaaaaaaaaG-----ATGCCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762776 17 -   2996164 AAAAAAAAAG-----ATCCCTT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972310 14 -  71996105 AAAAAAAGA--------TCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149253 17 +    290775 AAAAAAAAAG-----ATCCCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2607226 17 -   3067355 agaaaaaaaa-----aTCCCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30044278 22 + 171630274 AAAAGGGGGGGGGGAATCCCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           193334 17 -    242197 AAAAGGGGGG-----ATCCCTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     186077 15 -   1771730 AAAGGGGG-------ATCCCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     261038 17 -    457564 AAAAAGGGGG-----ATCCCTT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     572669 17 +    730504 GAAAAAAGAG-----ATCCTTC
i proCoq1.NW_012152574v1   C 0 C 0
s canFam3.chr35            26208650  9 +  26524999 --------GG-----GTCCCTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            13997  3 +    102524 ------------------CCT-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                77401 27 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e otoGar3.GL873550            71382 10824 +  18854210 I
e cerAty1.NW_012002711v1     514451 1863 +    766320 I

a score=360320.000000
s hg38.chr6_GL000254v2_alt   859816 31 +   4827813 ACAGATGTTTCAAACCTACATGATTTAGGTC
s panTro5.chr6             29822481 31 + 175400573 ACAGATGTTTCAAACCTACATGATTTAGGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057095 31 + 173848474 ACAGATGTTTCAAACCTACATGATTTAGGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863614 31 +   6154872 ACAGATGTTTCAAACCTACATGATTTAGGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574625 31 + 122973662 ACAGATGTTTCAAACCTACATGATTTAGGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054488 31 + 172585720 ACAGACGTTTCAAACCTACATGATTTAAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717333 31 - 170955103 ACAGACGTTTCAAACCTACATGATTTAAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762793 31 -   2996164 ACAGACGTTTCAAACCTACATGATTTAAGTC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972324 31 -  71996105 ACAGACGTTTCAAACCTACATGATTTAAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149270 31 +    290775 ACAGACGTTTCAAACCTACATGATTTAAGTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2607243 31 -   3067355 ACAGATGTTTCAAACATACATGGTTTAAGTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30044300 31 + 171630274 ACAGATGTTTCAAACGTACATGATTTATGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           193351 31 -    242197 ACAGATGTTTCAAACCTACATGATTTAGGTC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     186092 31 -   1771730 ACAGATGTTTCAAACCTACATCGTTTAGGTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     261055 31 -    457564 ACAGATGTTTCAAACCTACATGATTTAGGTC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                77428 31 + 123392446 ACAGATGTTTCAAGCCCACAAGGTTTAGGTC
i micMur3.chr6             I 27 C 0
s proCoq1.NW_012152574v1     572686 31 +    730504 GCAGATGTTTGAAGCCCACCAGGTTTAGGTC
i proCoq1.NW_012152574v1   C 0 C 0
s canFam3.chr35            26208659 31 +  26524999 ACAAATGCTTGAAGCCCGTGAGATTTAGGTC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            14000 15 +    102524 CCAGTTG----------------TTCATGTC
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57906564 5566 -  94987271 I
e otoGar3.GL873550            71382 10824 +  18854210 I
e cerAty1.NW_012002711v1     514451 1863 +    766320 I

a score=102288.000000
s hg38.chr6_GL000254v2_alt   859847 7 +   4827813 TCCTGAG
s panTro5.chr6             29822512 7 + 175400573 TCCTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057126 7 + 173848474 TCCTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863645 7 +   6154872 TCCTGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574656 7 + 122973662 TCCTGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054519 7 + 172585720 TCCTGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717364 7 - 170955103 TCCTGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762824 7 -   2996164 TCCTGAG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972355 7 -  71996105 TCCTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149301 7 +    290775 TCCTGAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2607274 7 -   3067355 TCCTGAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30044331 7 + 171630274 TCCTGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           193382 7 -    242197 TCCTGAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     186123 7 -   1771730 TCCTGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     261086 7 -    457564 TACTCAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                77459 7 + 123392446 TCCTGAG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     572717 7 +    730504 TCCTGAG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            82206 7 +  18854210 TTCCGAG
i otoGar3.GL873550         I 10824 C 0
s canFam3.chr35            26208690 7 +  26524999 CCATGAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            14015 7 +    102524 TGCTAAG
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57906564 5566 -  94987271 I
e cerAty1.NW_012002711v1     514451 1863 +    766320 I

a score=203801.000000
s hg38.chr6_GL000254v2_alt   859854 12 +   4827813 GGCAGGCAC-TTA
s panTro5.chr6             29822519 12 + 175400573 GGCAGGCAC-TTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057133 12 + 173848474 GGCAGGCAC-TTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863652 12 +   6154872 GGCAGGCAC-TTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574663 12 + 122973662 GGCAGGCAC-TTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054526 12 + 172585720 GGCAGGCAC-TTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717371 12 - 170955103 GGCAGGCAC-TTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762831 12 -   2996164 GGCAGGCAC-TTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     516314 12 +    766320 GGCAGGCAC-TTA
i cerAty1.NW_012002711v1   I 1863 C 0
s chlSab2.chr17            28972362 12 -  71996105 GGCAGGCAC-TTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149308 12 +    290775 GGCAGGCAC-TTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2607281 12 -   3067355 GGCAGGCAC-TTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30044338 13 + 171630274 GGCAGGCACTTTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           193389 12 -    242197 GGCAGGCAC-TTA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     186130 12 -   1771730 GGCAGGCAC-TTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     261093 12 -    457564 GGCAGGCAC-TTA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                77466 12 + 123392446 GGCAGGCAC-TTA
i micMur3.chr6             C 0 I 31
s proCoq1.NW_012152574v1     572724 12 +    730504 GGCAGGCAC-TTA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            82213 12 +  18854210 GGCAGACAC-CCA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26208697 12 +  26524999 GAGGGGCAC-TTA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            14022 11 +    102524 AGCAG-CAC-TTA
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57906564 5566 -  94987271 I

a score=97625.000000
s hg38.chr6_GL000254v2_alt   859866 8 +   4827813 ACTATTCA
s panTro5.chr6             29822531 8 + 175400573 ACTATCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057145 8 + 173848474 ACTATCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863664 8 +   6154872 ACTATTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574675 8 + 122973662 ACTATTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054538 8 + 172585720 ACTATTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717383 8 - 170955103 ACTATTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762843 8 -   2996164 ACTATTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     516326 8 +    766320 ACTATTCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28972374 8 -  71996105 ACTATTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149320 8 +    290775 ACTATTCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2607293 8 -   3067355 ACTATTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30044351 8 + 171630274 CCTATTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           193401 8 -    242197 CCTATTCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     186142 8 -   1771730 CCTATTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     261105 8 -    457564 CCTATTCA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     572736 8 +    730504 CCCATCCA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            82225 4 +  18854210 ----TCCA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26208709 8 +  26524999 TCTACCCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            14033 8 +    102524 CCTGTCCA
i dasNov3.JH582591         C 0 I 1272
e micMur3.chr6                77478 31 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I

a score=6594.000000
s hg38.chr6_GL000254v2_alt   859874 3 +   4827813 TTC
s panTro5.chr6             29822539 3 + 175400573 TTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057153 3 + 173848474 TTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863672 3 +   6154872 TTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574683 3 + 122973662 TTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054546 3 + 172585720 TTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717391 3 - 170955103 TTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762851 3 -   2996164 TTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     516334 3 +    766320 TTC
i cerAty1.NW_012002711v1   C 0 I 3621
s chlSab2.chr17            28972382 3 -  71996105 TTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149328 3 +    290775 TTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2607301 3 -   3067355 TTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30044359 3 + 171630274 TCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           193409 3 -    242197 TCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     186150 3 -   1771730 TCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     261113 3 -    457564 TCC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     572744 2 +    730504 CC-
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            82229 2 +  18854210 CC-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26208717 2 +  26524999 CC-
i canFam3.chr35            C 0 C 0
e micMur3.chr6                77478 31 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I

a score=285184.000000
s hg38.chr6_GL000254v2_alt   859877 25 +   4827813 TAACATGACATGTGAGTTGGAAGCC
s panTro5.chr6             29822542 25 + 175400573 TAACACGACATGTGAGTTGGAAGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057156 25 + 173848474 TAACACGACATGTGAGTTGGAAGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863675 25 +   6154872 TAACATGACATGTGAGTTGGAAGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574686 25 + 122973662 TAACATGACATGTGAGTTGGAAGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054549 25 + 172585720 CAACATGACATGTGAGTTGGAAACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717394 25 - 170955103 CAACATGACATGTGAGTTGGAAACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762854 25 -   2996164 CAACATGACATGTGAGTTGGAAACC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972385 25 -  71996105 TAACATGACATGTGAGTTGGAAGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149331 25 +    290775 TAACATGACATGTGAGTTGGAAGCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2607304 23 -   3067355 TAACATGAC--GTGAGTTGGAAGCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30044362 25 + 171630274 TAACATGACATGTGAGTTGGAAGCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           193412 25 -    242197 TAACATGACATGTGAGTTGGAAACC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     186153 25 -   1771730 TAACATGACATGTGAGTTGGAAGCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     261116 25 -    457564 TAACATGACATGTGAGTTGGAAGCC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     572746 25 +    730504 TGACACAGCACTGGAGTTGGAAGCA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            82231 25 +  18854210 TAACAGAGCACTTGAGTTGGAAGCA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26208719 25 +  26524999 TAGTATAGCACTTGAGTTGGAAGCA
i canFam3.chr35            C 0 C 0
e micMur3.chr6                77478 31 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I

a score=96961.000000
s hg38.chr6_GL000254v2_alt   859902 10 +   4827813 TTAAAGGAAC
s panTro5.chr6             29822567 10 + 175400573 TTAAAGGAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057181 10 + 173848474 TTAAAGGAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863700 10 +   6154872 TTAAAGGAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574711 10 + 122973662 TTAAAGGAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054574 10 + 172585720 TTAAAGGAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717419 10 - 170955103 TTAAAGGAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762879 10 -   2996164 TTAAAGGAAC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972410 10 -  71996105 TTAAAGGAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149356 10 +    290775 TTAAAGGACC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2607327 10 -   3067355 TTAAAGGAAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30044387  4 + 171630274 TTAA------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           193437  4 -    242197 TTAA------
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     186178 10 -   1771730 TTAAAAGAAC
i cebCap1.NW_016107755v1   C 0 I 382
s aotNan1.NW_018509740v1     261141 10 -    457564 TTAAAAGAAC
i aotNan1.NW_018509740v1   C 0 I 201
s micMur3.chr6                77509 10 + 123392446 TTAAAGGGAC
i micMur3.chr6             I 31 C 0
s proCoq1.NW_012152574v1     572771 10 +    730504 TTAAAGGGAC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            82256 10 +  18854210 TCAAAGGTAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26208744 10 +  26524999 TTTAAGGGAT
i canFam3.chr35            C 0 C 0
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I

a score=119771.000000
s hg38.chr6_GL000254v2_alt   859912 13 +   4827813 ATTATTCAAGAAC
s panTro5.chr6             29822577 13 + 175400573 ATTATTCAAGAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057191 13 + 173848474 ATTATTCAAGAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863710 13 +   6154872 ATTATTCAAGAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574721 13 + 122973662 ATTATTCAAGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054584 13 + 172585720 ATTATTCAAGAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717429 13 - 170955103 ATTATTCAAGAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762889 13 -   2996164 ATTATTCAAGAAC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972420 13 -  71996105 ATTATTCAAGAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149366 13 +    290775 ATTATTCGAGAAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2607337 13 -   3067355 ATTATTCAAGAAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30044391  6 + 171630274 -------AAGAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           193441  6 -    242197 -------AAGAAC
i saiBol1.JH378357         C 0 C 0
s micMur3.chr6                77519 13 + 123392446 ATTATTCAAGAAC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     572781 13 +    730504 ATTATTCAAGAAC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            82266 13 +  18854210 ATTATTCAAGAAC
i otoGar3.GL873550         C 0 I 44
s canFam3.chr35            26208754 13 +  26524999 GGCATTGGGGAAC
i canFam3.chr35            C 0 C 0
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e aotNan1.NW_018509740v1     261151 201 -    457564 I
e cebCap1.NW_016107755v1     186188 382 -   1771730 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I

a score=31243.000000
s hg38.chr6_GL000254v2_alt   859925 3 +   4827813 CTC
s panTro5.chr6             29822590 3 + 175400573 CTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057204 3 + 173848474 CTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863723 3 +   6154872 CTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574734 3 + 122973662 CTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054597 3 + 172585720 CTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717442 3 - 170955103 CTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762902 3 -   2996164 CTC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972433 3 -  71996105 CTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149379 3 +    290775 CTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2607350 3 -   3067355 CTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30044397 3 + 171630274 CTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           193447 3 -    242197 CTT
i saiBol1.JH378357         C 0 C 0
s micMur3.chr6                77532 3 + 123392446 CTC
i micMur3.chr6             C 0 I 4596
s proCoq1.NW_012152574v1     572794 3 +    730504 CTC
i proCoq1.NW_012152574v1   C 0 I 2967
s canFam3.chr35            26208767 3 +  26524999 CTC
i canFam3.chr35            C 0 I 493
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e otoGar3.GL873550            82279 44 +  18854210 I
e aotNan1.NW_018509740v1     261151 201 -    457564 I
e cebCap1.NW_016107755v1     186188 382 -   1771730 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I

a score=243542.000000
s hg38.chr6_GL000254v2_alt   859928 49 +   4827813 GTCTCTACTAAAAATATGAAGTCTCTAATAAAAA---TTAA-AAAgtctctac
s panTro5.chr6             29822593 49 + 175400573 CTCTCTACTAAAAATATGAAGTCTCTAATAAAAA---TTAA-AAAgcctctac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057207 49 + 173848474 CTCTCTACTAAAAATATGAAGTCTCTAATAAAAA---TTAA-AAAGCctctac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863726 49 +   6154872 ATCTCTACTAAAAATATGAAGTCTCTAATAAAAA---TTAA-AAGGCctctac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574737 49 + 122973662 GTCTCTACTGAAAGTATGAAGTCTCTAATAAAAA---TAAA-AAAGCctctac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054600 50 + 172585720 ATGTCTACTAAAAATATGAAGTCTCTAATAAAAATTTTT---AAAACctctac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717445 50 - 170955103 ATGTCTACTAAAAATATGAAGTCTCTAATAAAAATTTTT---AAAACctctac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762905 50 -   2996164 ATGTCTACTAAAAATATGAAGTCTCTAATAAAAATTTTT---AAAACctctac
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972436 51 -  71996105 ATGTCTACTAAAAATATGAAGTCTCTAATAAAAA-TTTAAA-AAAACctctac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149382 52 +    290775 AAGTCTACTAAAAATATGAAGTCTCTAATAAAAATTTTTTA-AAAACTtctac
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2607353 49 -   3067355 ATCTCTACTAAAAATATGAAGTCTCTAATAAAAA---TAAA-AAAACctctac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30044400 50 + 171630274 GTCTCTACTAAAAATGCAAAGCCTCTACTAAAAA---TAAAGAAAGCCTCTGT
i calJac3.chr4             C 0 I 510
s saiBol1.JH378357           193450 46 -    242197 GTCTCTACTAAAAATGCAAAGCCTCTACTAAAAA---T----AAAGTCTCTGT
i saiBol1.JH378357         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e otoGar3.GL873550            82279 44 +  18854210 I
e aotNan1.NW_018509740v1     261151 201 -    457564 I
e cebCap1.NW_016107755v1     186188 382 -   1771730 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I

a score=57246.000000
s hg38.chr6_GL000254v2_alt   859977 10 +   4827813 taaaaat-aca
s panTro5.chr6             29822642 10 + 175400573 taaaaat-aca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057256 10 + 173848474 taaaaat-aca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863775 10 +   6154872 taaaaat-aca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574786 11 + 122973662 taaaaataaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054650 10 + 172585720 taaaaat-aca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717495 10 - 170955103 taaaaat-aca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762955 10 -   2996164 taaaaat-aca
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972487 10 -  71996105 tgaaaat-aca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149434 10 +    290775 taaaaat-aca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2607402 10 -   3067355 taaaaat-aca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30044960  8 + 171630274 taaaaat-a--
i calJac3.chr4             I 510 C 0
s saiBol1.JH378357           193496 10 -    242197 TAAAAAT-ACA
i saiBol1.JH378357         C 0 I 129
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e otoGar3.GL873550            82279 44 +  18854210 I
e aotNan1.NW_018509740v1     261151 201 -    457564 I
e cebCap1.NW_016107755v1     186188 382 -   1771730 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I

a score=19013.000000
s hg38.chr6_GL000254v2_alt   859987 12 +   4827813 aataataataat---
s panTro5.chr6             29822652  6 + 175400573 ------aataat---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057266  6 + 173848474 ------aataat---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863785  6 +   6154872 ------aataat---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574797  6 + 122973662 ------aataat---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054660  6 + 172585720 ------aataat---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717505  6 - 170955103 ------aataat---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762965  6 -   2996164 ------aataat---
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972497  6 -  71996105 ------aataat---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149444 12 +    290775 aataataataat---
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2607412  9 -   3067355 ---aataataat---
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30044968  9 + 171630274 ------aaaaataca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           193635 12 -    242197 ---aataataataca
i saiBol1.JH378357         I 129 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e otoGar3.GL873550            82279 44 +  18854210 I
e aotNan1.NW_018509740v1     261151 201 -    457564 I
e cebCap1.NW_016107755v1     186188 382 -   1771730 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I

a score=1180731.000000
s hg38.chr6_GL000254v2_alt   859999 191 +   4827813 aataataatagccagggctggtggcaggtgcctgtaaaccccttgcttgggaagctgaggtaggagaaccacttgaacccaggaggcggaggtttcggtgaaccgagatcacgccactgcattccagcctgggagttagagtgagactccatctcaaaaaaataat------aataaa-------------ata---aaataaaCCTCAAACG
s panTro5.chr6             29822658 191 + 175400573 aataataatagccagggctggtggcaggtgcctgtaaaccccttgcttgggaggctgaggtaggagagccacttgaacccaggaggcggaggtttcggtgaactgagatcacgccactgcattccagcctgggagttagagtgagactccaactcaaaaaaataat------aataaa-------------ata---aaataaaCCTCAAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057272 191 + 173848474 aataataatagccagggctggtggcaggtgcctgtaaaccccttgcttgggaggctgaggtaggagagccacttgaacccaggaggcggaggtttcggtgaactgagatcacgccactgcattccagcctgggagttagagtgagactccaactcaaaaaaataat------aataaa-------------ata---aaataaaCCTCAAACG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863791 186 +   6154872 aataataatagccagggctggtggcaggtgcctgtaaaccccttgcttgggaggctgaggtagaagaaccacttgaacccaggaggcggaggtttcggtgaaccgagatcacaccactgcattccagcctgggagtta----gagactccatctcaaaaaaa-aat------aataaa-------------ata---aaataaaCCTCAAACG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574803 192 + 122973662 aataataatagccagggctggtggcaggtgcctgtaatccccttgcttgggaggctgaggtaggagaaccacttgaacccaggaggtggaggttttggtgaaccaagatcacgccactgcattccagcctgggagttagagtgagactgcatctcaaaata--aat------aaataa-------------ataaataaataaaCCTCAAACG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054666 188 + 172585720 aataataatagccagggctggtggcaggtgcctgt-atccccttacttgggaggctgaggtaggagaaccacttgaacccaggaggtggaggtttcagtgaactgagatcatgccactgcattctagcctgggagacagagtgaaactccatctcaaaaaaaaa--------aaaaac-------------aaa---aaaaaaaaCTCAAACG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717511 188 - 170955103 aataataatagccagggctggtggcaggtgcctgt-atccccttacttgggaggctgaggtaggagaaccacttgaacccaggaggtagaggtttcagtgaactgagatcatgccactgcattctagcctgggagacagagtgaaactccatctcaaaaaaaaa--------aaaaaa-------------aaa---aaaaaaaaCTCAAACG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2762971 185 -   2996164 aataataatagccagggctggtggcaggtgcctgt-atccccttacttgggaggctgaggtaggagaaccacttgaacccaggaggtagaggtttcagtgaactgagatcatgccactgcattctagcctgggagacagagtgaaactccatctc---aaaaaa--------aaaaaa-------------aaa---aaaaaaaCCTCAAACG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972503 196 -  71996105 aataataatagccagggctagtggcagatgcctgtaatccccttacttgggaggctgaggtaggagaaccacttgaacccaggaggtggaggtttcggtgaaatgagatcacgccactgcattccagcctgggagacagagtgagactccatctccaaaaaacaaacaaac-aaacaa-------------aca---aacaaaAACTCAAATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149456 196 +    290775 aataataatagccagggctggtggcaggtgcctgt-atccccttacttgggatgctgaggtaggagaaccacttgaacccaggaggtggaggtttcggtgaactgagatcacgccactgcattccagcctgggagacagagtgagactccatctccaaaacaaaacaaaacaaaacaa-------------aac---aaaaaaaacTCAAACG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2607421 183 -   3067355 aataataatagccagggcagatggcaagtgcctgtaatccccttacttgggaggctgaggtagaagaaccacttgaacccaggaggtggaggtttcggtgaactgagatcatgccactgcattccagcctgggagatagagtgagactccatctccaa--------------aaaaaa-------------aaa---aaaaaaaaCTCAAACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30044977 183 + 171630274 ---aataataaccaggcatggtggcaggtgcctgtaatctcctt-cttcagatgctgaggcaggagaatcgcttgaacccaggaggtggaggttgtagtgaaccaagatcaggccactgcactccagcctaggtaccagaatgagactccatctcaaccaaaaa--------aaaaaa---------------a---agaagaaCCTCAAAGT
i calJac3.chr4             C 0 I 5
s saiBol1.JH378357           193647 202 -    242197 aataataataaccaggcatggcggcaggtgcctgtaatctccttacttcggatgctgagacaggagaattgcttgaacccaggagttggaggttgtagtgaaccaagatcaggccagagcactccagcctaggtaacagaatgagactccatctcaacaaaaaa--------aaaaaaaagaagaagaagaaGA---AGAAGAACCTCAAAGT
i saiBol1.JH378357         C 0 I 5
s aotNan1.NW_018509740v1     261352 199 -    457564 aataataataaccaggcatgatggcaggtgcctgtaatctctttacttcggatgctgaggcaggagaattgcttgaacccaggaggtggaggttgtagtgaaccaagatcaggccactgcactccagcctaggtaacagaatgagactccatctcaaaaaaaaa--------aaaaaa---aaaaagaagaaga---aGAAGAACCTCAAAGT
i aotNan1.NW_018509740v1   I 201 I 5
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e otoGar3.GL873550            82279  44 +  18854210 I
e cebCap1.NW_016107755v1     186188 382 -   1771730 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I

a score=482376.000000
s hg38.chr6_GL000254v2_alt   860190 51 +   4827813 TCTGAAGGGCTCACCGAATCATGAATAGATGCTTATGTGTAGGGCCCAGCC-
s panTro5.chr6             29822849 51 + 175400573 TCTGAAGGGCTCACTGAATCATGAATAGATGCTTATGTGTAGGGCCTAGCC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057463 51 + 173848474 TCTGAAGGGCTCACTGAATCATGAATAGATGCTTATGTGTAGGGCCTAGCC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5863977 51 +   6154872 TCTGAAGGGCTCACTGAATCATGAATAGATGCTTATGTGTAGGGCCCAGCC-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74574995 50 + 122973662 TCTGAA-GGCTCACTGAATCATGAATAGATACTTATGTGTAGCGCCCAGCC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054854 51 + 172585720 TCTGAAGGGCTCACTGAATCATGAATAGATACTTACCTGTAGGGCCCAACC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717699 51 - 170955103 TCTGAAGGGCTCACTGAATCATGAATAGATACTTACCTGTAGGGCCCAACC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2763156 51 -   2996164 TCTGAAGGGCTCACTGAATCATGAATAGATACTTACCTGTAGGGCCCAACC-
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972699 51 -  71996105 TCTGAAGGGCTCACTGAATCATGGATAGATACTTACCTGTAGGGCCCAACC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149652 51 +    290775 TCTGAAGGGCTCATTGAATCATTGATAGATACTTACCTGTAGGGCCCAACC-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2607604 51 -   3067355 TCTGAAGGGCTCACTGAATCATGGATAGATACTTATGTGTAGGGCCCAGCC-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30045165 51 + 171630274 TATCAAGGGCTCACTGAATCATGAATAGATACTTATGTGTAGGGCCCAGCC-
i calJac3.chr4             I 5 I 305
s saiBol1.JH378357           193854 51 -    242197 TCTGAAGGGCTCATTGAATCATGAACAGATACTTAAGTGTAAGGCCCAGCC-
i saiBol1.JH378357         I 5 I 347
s cebCap1.NW_016107755v1     186570 51 -   1771730 TCTGAAGGGCTCACTGAATCATGAACAGATACTTATGTGTAGGGCCCAGCC-
i cebCap1.NW_016107755v1   I 382 C 0
s aotNan1.NW_018509740v1     261556 51 -    457564 TCTGAAGGGCTCACTGAATCATGAACAGATATTTATGTGTAGGGCCCAGCC-
i aotNan1.NW_018509740v1   I 5 I 299
s otoGar3.GL873550            82323 52 +  18854210 TCTGAAGGGCTCACTGAATCATGAAGAGACACTGACGCACAGGGCCCAGCTC
i otoGar3.GL873550         I 44 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I

a score=12000.000000
s hg38.chr6_GL000254v2_alt   860241 1 +   4827813 C
s panTro5.chr6             29822900 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057514 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5864028 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74575045 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054905 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717750 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2763207 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972750 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149703 1 +    290775 C
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2607655 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30045521 1 + 171630274 c
i calJac3.chr4             I 305 C 0
s saiBol1.JH378357           194252 1 -    242197 c
i saiBol1.JH378357         I 347 C 0
s cebCap1.NW_016107755v1     186621 1 -   1771730 C
i cebCap1.NW_016107755v1   C 0 I 293
s aotNan1.NW_018509740v1     261906 1 -    457564 c
i aotNan1.NW_018509740v1   I 299 C 0
s otoGar3.GL873550            82375 1 +  18854210 C
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I

a score=641467.000000
s hg38.chr6_GL000254v2_alt   860242 67 +   4827813 TGTCTTATCCTTCTATCTCCCAGGGAAGGGGAAACCTTCTGGCTCCTCCTATGCAGAATTAATCGCT
s panTro5.chr6             29822901 67 + 175400573 TGTCTTATCCTTCTATCTCCCAAGGAAGGGGAAACCTTCTGGCTCCTCCTATGCAGAATTAATTGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057515 67 + 173848474 TGTCTTATCCTTCTATCTCCCAAGGAAGGGGAAACCTTCTGGCTCCTCCTATGCAGAATTAATTGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5864029 67 +   6154872 TATCTTATCCTTCTATCTCCCAGGGAAGGGGAAACCTTCTGGCTCCTCCTATGCAGAATTAATCGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74575046 67 + 122973662 TGTCTTATCCTTCTATCTCCCAGGGAAGGGGAAACCTTCTGGCTCCTCCTATGCAGAATTAATCGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054906 67 + 172585720 TGTCTTATCCCTCTTTCTCCCAGGGAAGGGGAAACCTTCTGGCTCCTCCTATGCAGAATTAATCGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717751 67 - 170955103 TGTCTTATCCCTCTTTCTCCCAGGGAAGGGGAAACCTTCTAGCTCCTCCTATGCAGAATTAATCGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2763208 67 -   2996164 TGTCTTATCCCTCTTTCTCCCAGGGAAGGGGAAACCTTCTAGCTCCTCCTATGCAGAATTAATCGCT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972751 67 -  71996105 TGTCTTATCCCTCTTTCTCCCAGGGAAGGGAAAACCTTCTGGCTCCTCCTATGCAGAATTAATCGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     149704 67 +    290775 TGTCTTATCCCTCTTTCTCCCAGGGAAGGGGAAACCTTCTGGCTCCTCCTATGTAGAATTAATCGCT
i manLeu1.NW_012099233v1   C 0 I 3181
s colAng1.NW_012115566v1    2607656 66 -   3067355 AGTCTTATCCCTCTCTCTCCCTGGGAAGGG-AAACCTTCTGGCTCCTCCTATGCAGAATTAATCGCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30045522 67 + 171630274 tgtCTTATCCCTCTATCTCCCAGGGAAGGGGAAACCTTCTGGCTCTTCCTATGTAGAATTAATCGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           194253 67 -    242197 tgtCTTATCCCTCTATCTCCCAGGGAAGGGGAAACCTTCTGGCTCTTCCTATGCAGAATTAATCGCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     186915 67 -   1771730 tGTCTTATCCCTCTATATCCCAGGGAAGGGGAAACCTTCTGGCTCTTCCTATGCAGAATTAATCGCT
i cebCap1.NW_016107755v1   I 293 C 0
s aotNan1.NW_018509740v1     261907 67 -    457564 tgtCTTATCCCTCTATCTCCCAGGGAAGGGGAAACCTTCTGGCTCTTCCTATGCAGAATTAATCGCT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            82376 64 +  18854210 TGTTGTATCCTGCCATC-CACAGTGCAGCC-AGGCTTCCTGGTTTC-CCTATGCAGAATTAATCACT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I

a score=2410866.000000
s hg38.chr6_GL000254v2_alt   860309 383 +   4827813 CACCCTtgaagggtaccagtatatgccacctcaaacta----tctttagcatgtggattattttgagctaacaattgaaaatca-tcagactagtgaatgctgt-aaaacaggatacaagttttccttttgtaaa-taaattcacatctgtaaaggtacaactcttactaatggagaagacatcagtttaaatctacataacaaaccttttctatctgtaaaggtacaactct-actaatggagaaga---cagtttaaatccac--ataacaaaccttactaaacca-ctttgtt--ccatattttcctggtcactttcccataacttgcctgcccatctaccactcacccagaagccccaaactccttttcctttacctagcc-aagatgttatacaG
s panTro5.chr6             29822968 383 + 175400573 CACCCTtgaagggtactagtatatgccacctcaaacta----tctttagcatgtggattattttgagctaacaattgaaaatta-tcagactagggaatgctgt-aaaacaggatacaagttttccttttgtaaa-taaattcacatctgtaaaggtacaactcttactaatggagaagacatcagtttaaatctacataacaaaccttttctatctgtaaaggtacaactct-actaatggagaaga---cagtttaaatccac--ataacaaaccttactaaacca-ctttgtt--ccatattttcctggtcactttcccataacttgccggcccatctaccactcacccagaagccccaaactccttttcctttaccaagcc-aagatggtatacaG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057582 383 + 173848474 CACCCTtgaagggtactagtatatgccacctcaaacta----tctttagcatgtggattattttgagctaacaattgaaaatta-tcagactagggaatgctgt-aaaacaggatacaagttttccttttgtaaa-taaattcacatctgtaaaggtacaactcttactaatggagaagacatcagtttaaatctacataacaaaccttttctatctgtaaaggtacaactct-actaatggagaaga---cagtttaaatccac--ataacaaaccttactaaacca-ctttgtt--ccatattttcctggtcactttcccataacttgccggcccatctaccactcacccagaagccccaaactccttttcctttaccaagcc-aagatggtatacaG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5864096 383 +   6154872 CACCCTtgaagggtaccagtatatgccacctcaaacta----tctttagcatgtggattattttgagctaacaattgaaaatca-tcagactagggaatgctgt-aaaacaggatacaagttttccttttgtaaa-taaattcacatctgtaaaggtacaactcttactaatggagaagacatcagtttaaatctacataacaaaccttttctatctgtaaaggtacaactct-actaatggagaaga---cagtttaaatccac--ataacaaaccttactaaacca-ctttgtt--ccatattttcctggtcactttcccataacttgcctgcccatctaccactcacccagaagccccaaactccttttcctttacctagcc-aagatggtatacaG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74575113 383 + 122973662 CACCCTtgaagggtaccagtatatgccacctcaaacta----tctttagcatatggattattttgagctaacaattgaaaatca-tcagactagggaatgatgt-aaaacagggtacaagttttccttttgtaaa-taaatttacatctgtaaaggtacaactcttactaatggagaagacatcagtttaaatctacataacaaacctttcctatctgtaaaggtacaactgt-actaatggagaaga---cagtttaaatccgc--ataacaaaccttactaaacca-ctttgtt--ccatattttcctagtcactttcccataacttgcctgcccatctaccactcacccagaagtcccaaactccttttcctttacctagcc-aagatggtatacaG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30054973 319 + 172585720 CACCCTtgaagggtaccaggatatgccacctcaaacta----tctttagcatatggattattttgagctaacaattgaaaatta-tcagactagggaatactgt-aaaacagggtacaagttttccttttgtaaa-taaatttacatctgtaaaggtacaactctt--------------------------------------------------------------------actaatggagaagacatcagtttaaatatgc--ataacaaaccttactaaacca-ctttgtt--ccatattttcctggtcactttcccataacttgcctccccatctatcactcacccagaagccccaaactccttttcctttacctagcc-aagatggtatacaG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29717818 319 - 170955103 CACCCTtgaagggtaccaggatatgccacctcaaacta----tctttagcatatggattattttgagctaacaattgaaaatta-tcagactagggaatactgt-aaaacagggtacaagttttccttttgtaaa-taaatttacatctgtaaaggtacaactctt--------------------------------------------------------------------actaatggagaagacatcagtttaaatatgc--ataacaaaccttactaaacca-ctttgtt--ccatattttcctggtcactttcccataacttgcctccccatctatcactcacccagaagccccaaactccttttcctttacctagcc-aAGATGGTATACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2763275 319 -   2996164 CACCCTtgaagggtaccaggatatgtcacctcaaacta----tctttagcatatggattattttgagctaacaattgaaaatca-tcagactagggaatgctgt-acaacagggtacaagttttccttttgaaaa-taaatttacatctgtaaaggtacaactctt--------------------------------------------------------------------actaatggagaagacatcagtttaaatctgc--ataacaaaccttactaaacca-ctttgtt--ccatattttcctggtcactttcccataacttgcctccccatctatcactcacccagaagccccaaactccttttcctttacctagcc-aagatggtatacaG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28972818 387 -  71996105 CACCCTtgaagggtaccaggatgtgccacctcaaacta----tctttagcatatggattattttgagctaacaattgaaaatca-tcagactagggaatgctgt-aaaacagggtacaagttttccttttgtaaa-taaatttacatctgtaaaggtacaactcttactaatggagaagacatctgtttaaatctgcataacaaaccttttctatctgtaaaggtacaactcttactaatggagaagacatcagtttaaatctgc--ataacaaaccttactaaacca-ctttgtt--ccatatgttcctggtcactttcccataacttgcctccccatctatcactcacccagaagccccaaactccttttcctttacctagcc-aagacggtatacaG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2607722 387 -   3067355 CACCCTtgaagggtaccagtatatgccacctcaaacta----tctttagcatatggattattttgagctaacaattgaaaatca-tcagactagagaatgctgt-aaaacagggtacaagttttccttttgcaaa-taaatttacacctgtaaaggtacaactcttaccaatggagaagacatcagtttaaatatgcataacaaaccttttctatctgtaaaggtacaactcttactaatggagaagacatcagtttaaatctgc--ataacaaaccttactaaacca-ctttgtt--ccatattttcctggtcactttcccacaacttgcctccccatctcttactcacccagaagccccaaactccttttcctttacctagcc-aagatggtatacaG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30045589 283 + 171630274 CATCCATGAAGGGtac----------caccttaaacta----tctttagcatgtgaattattttgagctaacaattgaaaacca-tcagactagggaatgctct-aaaaca--atacaagttatccttttgtaaa-taaatttacatctgtaaaggtaaaactcttact--------------------------------------------------------------------aatggagaagacatcagtttaaatctgc--ataacaaatcttactaaacca-cttggtt--ccatattttcctggtcactttcccataccttgactccccatctatcattcacccagaagcc------------------------cc-aagATGGTATTCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           194320 283 -    242197 CACCCATGAATGGtac----------caacttaaacta----tctttagcatgtgaattatttcgggctaacaattgaaaacca-tcagactagggaatgctct-aaaaca--atacaagttatccttttgtaaa-taaatttacatctgtaaaggtacaactcttact--------------------------------------------------------------------aatgaagaaaacatccatttaaatctgc--ataacaaatcttaccaaacca-ctttgtt--ccatattttcctggtcactttctcataccttgcctccccATCTATCATTCACCCAGAAGCC------------------------CC-AAAATAGTATACAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     186982 285 -   1771730 CATCCATGAAGGGtac----------caccttaaacta----tctttagcatgtgaattattttgagctaacaattgaaaacca-tcagactagggaatgctct-aaaaca--atacaagttatccttttgtaaa-taaatttacatctgtaaaggtacaactcttact--------------------------------------------------------------------aatgaagaagacatcagtttaaatctgcatataacaaatcttaccaaacca-ctttgtt--ccatattttcctggtcactttcccataccttgcctccccatctatcattcacccagaagcc------------------------cc-aagATGGTATACTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     261974 283 -    457564 CATCCATGAAGGGtac----------caccttaaacta----tctttagcatgtgaattattttgagctaacaattgaaaacca-tcagactagggcatgctct-aaaaca--atacaagttatccttttgtaaa-taaatttacatctgtaaaggtacaactcttact--------------------------------------------------------------------aatgaagaagacatcagcttaaatctgc--ataacaaatcttactaaacca-ctttgtt--ccatattttcctggtcactttcccataccttgcctccccatctatcattcacccagaagcc------------------------cc-aagATGGTATACAG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            82440 330 +  18854210 CATCCTtgaagggtaccagaatatgccacctcaaaatacacctctttagaatatgggttattttgagcgagctaaagaccatcagtcagaccagggaatgttctaaaaacaggacacttgttctccttttataaaggaaatttccatttgtaaaggaacaactctt--------------------------------------------------------------------atcaatggaaaaagcactagcttaagtctgc--attgcaaatcttactaaaccatctttgtttaccatattttcctagtcatttccccttaatttacctccccaccacccacccacccagaagctcaaaacccctttgcttttatttAGCCTAAGATGATATACAG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I

a score=915849.000000
s hg38.chr6_GL000254v2_alt   860692 142 +   4827813 TTGCTAAgaacaacacga-tttgaactccatggattcactcacacatga-----tttttttcag-taagtatattgaaaa--tttttggagatttgtgacaatttgaaaaaactc----acaaaccacatagcttagaagcactgg-aaaaattaa
s panTro5.chr6             29823351 146 + 175400573 TTGCTAAgaacaacacaa-tttgaactccatggattcactcacacatga-----tttttttcag-taagtatattgaaaa--tttttggagatttgtgacaatttgaaaaaactcacagacaaaccacatagcttagaagcactgg-aaaaattaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30057965 146 + 173848474 TTGCTAAgaacaacacaa-tttgaactccatggattcactcacacatga-----tttttttcag-taagtatattgaaaa--tttttggagatttgtgacaatttgaaaaaactcacagacaaaccacatagcttagaagcactgg-aaaaattaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5864479 146 +   6154872 TTGCTAAgaacaacacga-tttgaactccatggattcactcacatatga-----tttttttcag-taagtttattgaaaa--tttttggagatttgtgacaatttgaaaaaactcacagacaaaccacatagcttagaagcactgg-aaaaattaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74575496 145 + 122973662 TTGCTAAgaacaacacga-tttgaactccatggattcactcacaca-ga-----tttttttcag-taagtatactgaaaa--tttttggagatttgtgacaattcgaaaaaactcacagacaaaccacatagcttagaagcactgg-aaaaattaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30055292 145 + 172585720 TTGCTAAgaacaacatgagtttgaactccatggattcactcacacatga-----cttttttcag-taagtatattgaaaaagtttttggagatttgtgacaatttgaaaaaac----agacaaaccccatagcctagacacattgg-aaaaattaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29718137 145 - 170955103 TTGCTAAgaacaacatgagtttgaactccatggattcactcacacatga-----cttttttcag-taagtatattgaaaaagtttttggagatttgtgacaatttgaaaaaac----agacaaaccccatagcctagacacattgg-aaaaattaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2763594 145 -   2996164 TTGCTAAgaacaacatgagtttgaactccatggattcactcatatatga-----tttttttcag-taagtatattgaaaaagtttttggagatttgtgacaatttgaaaaaac----agacaaaccccatagcctagacacattgg-aaaaattaa
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28973205 145 -  71996105 TTGCTAAgaacaacacgagtttgaactccatggattcactcacacatga-----tttttttcag-gaagtatattgaaaaaggttttggagatttgtgacaatttgaaaaaac----agacaaacctcatagcctagacacactgg-aaaaattaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2608109 145 -   3067355 TTGCTAAgaacaacatgagtttgaactccatggattcactcacacatga-----tttttttcag-taagtatattgaaaaagtttttggagatttgtgacaatttgaaaaaac----agacaaaccccatagcctagacacattag-aaaaattaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30045872 146 + 171630274 TGGCTAAgaacaacactagtttgaactgcatgggtttcctcacacatgatttttttttttttag-taagtatatttaaattttttttggagatttgtgataatttgaaaaaactc--agacaaaccacatagct------aattgg-aaaaattaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           194603 140 -    242197 TGGCTAAgaacaacactagtttgaactgcatgggtttactcacacatga-----ttttttttag-taagtatattgaaattttttttggagatttgtgacaatttgaaaaaactc----acaaacaacatagct------aactggaaaaaattaa
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     187267 141 -   1771730 TGGCTAAgaacaacactagtttgaactgcatgggtttactcacacatga----tttttttttagttaagtatattgaaatttttttcggagatttgtgacaatttgaaaaaactc----acaaaccacatagct------aactgg-aaaaattaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     262257 142 -    457564 TGGCTAAgaacaacactagtttgaactgcatgggtttactcacac--ga----tttttttttag-taagtatattgaaattttttttggagatttgtgacaatttgaaaaaactcacagacaaaccacatagct------aattgg-aaaaattaa
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e otoGar3.GL873550            82770   0 +  18854210 C
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I

a score=827099.000000
s hg38.chr6_GL000254v2_alt   860834 102 +   4827813 tgggccaggtgctgtggcacatgcctgtaatctcagaactttgggaggccaagatggatgcattgcttgagctcaggagttggagaccagcctgggtaacat
s panTro5.chr6             29823497 102 + 175400573 tgggccaggtgctgtggcacatgcctgtaatctcagaactttgggaggccaagatggatgcattgcttgagctcaggagttggagaccagcctgggtaacat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30058111 102 + 173848474 TGggccaggtgctgtggcacatgcctgtaatctcagaactttgggaggccaagatggatgcattgcttgagctcaggagttggagaccagcctgggtaacat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5864625 100 +   6154872 tgggccaggtgctgtggcacatgcctg--aactcagaactttgggaggccaagatggatgcattgcttgagctcaggagttggagaccagcctgggtaacat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74575641 102 + 122973662 CAggccaggtgctgtggcacatgcctgtaatcccagaactttgggaggccaagatggatgcattgcttgagctcaggagttggagaccagcctgggtaacat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30055437 102 + 172585720 caggccaggtgctgtggcacactcctgtaatcccagaactttgggaggccaagatggatgcattgcttgagctcaggagttggagaccagcctgggtaacat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29718282 102 - 170955103 caggccaggtgctgtggcacactcctgtaatcccagaactttgggaggccaagatggatgcattgcttgagctcaggagttggagaccagcctgggtaacat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2763739 102 -   2996164 caggccaggtgctgtggcacactcctgtaatcccagaactttgggaggccaagatggatgcattgcttgagctcaggagttggagaccagcctgggtaacat
i macNem1.NW_012011356v1   C 0 I 4
s chlSab2.chr17            28973350 102 -  71996105 caggccaggtgctgtggcacacgcctgtaatcccagaactttgggaggccaagatggatgcattgcttgagctcaggagttggagaccagcctgggtaacat
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2608254 102 -   3067355 CAggccaggtgctgtggcacacgcctgtaatcccagaactttgggaggccaagatggatgcattgcttgagctcaggagttggagaccagcctgggtaacat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30046018 101 + 171630274 AGAgccaggtgctgtggcatacacttgtaatcccagaactttcagaggccgagatggatgaattgcttgagctcaggagttggagaccagcct-ggtaacat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           194743 101 -    242197 CGAGCCAGCTGATgtggcatacgcctgtaatcccagaactttcagatgccgagatggatggattgcttgagctcaggagttggagaccagcct-ggtaacac
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     187408 101 -   1771730 cgagccaggtgctgtggcatatgcctgtaatcccagaactttcagacgccgagatggatggattgcttgagctcaggagttggagaccagcct-ggtaagat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     262399 101 -    457564 cgagccaggtgctgtggcatacgcctgtaatcccagaactttcagaggccgagatgtatagattgcttgagctcaggagttggagaccaacct-ggtaacat
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            82770 100 +  18854210 TAAgccaggcacagtggctcacacctgtaatcctagcactctgggaggccaaggcgg-tggattgcttgacctcatgagttcaacaccaacctgagcaaga-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I

a score=121168.000000
s hg38.chr6_GL000254v2_alt   860936 17 +   4827813 ggggaaaccccatctct
s panTro5.chr6             29823599 17 + 175400573 ggggaaaccccatctct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30058213 17 + 173848474 ggggaaaccccatctct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5864725 17 +   6154872 ggggaaaccccatctct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74575743 16 + 122973662 -gggaaaccccatctct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30055539 17 + 172585720 gggaaaacctcatctct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29718384 17 - 170955103 gggaaaacctcatctct
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            28973452 17 -  71996105 ggggaaacctcatctct
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2608356 17 -   3067355 ggggaaacctcatctct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30046119 17 + 171630274 ggtgaaaccccacctct
i calJac3.chr4             C 0 I 1
s saiBol1.JH378357           194844 17 -    242197 ggtgaaaccccacctct
i saiBol1.JH378357         C 0 I 1
s cebCap1.NW_016107755v1     187509 17 -   1771730 ggtgaaaccccacctct
i cebCap1.NW_016107755v1   C 0 I 1618
s aotNan1.NW_018509740v1     262500 17 -    457564 ggtgaaaccccacctct
i aotNan1.NW_018509740v1   C 0 I 1620
s otoGar3.GL873550            82870 16 +  18854210 -gtgagaccccatctct
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e macNem1.NW_012011356v1    2763841  4 -   2996164 I

a score=-2274.000000
s hg38.chr6_GL000254v2_alt   860953 2 +   4827813 gc
s panTro5.chr6             29823616 2 + 175400573 gc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30058230 2 + 173848474 gc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5864742 2 +   6154872 gc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74575759 2 + 122973662 gc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30055556 2 + 172585720 ac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29718401 2 - 170955103 ac
i macFas5.chr4             C 0 I 1
s chlSab2.chr17            28973469 2 -  71996105 ac
i chlSab2.chr17            C 0 I 1
s colAng1.NW_012115566v1    2608373 2 -   3067355 ac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30046137 1 + 171630274 a-
i calJac3.chr4             I 1 C 0
s saiBol1.JH378357           194862 1 -    242197 a-
i saiBol1.JH378357         I 1 C 0
s otoGar3.GL873550            82886 2 +  18854210 ac
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e aotNan1.NW_018509740v1     262517 1620 -    457564 I
e cebCap1.NW_016107755v1     187526 1618 -   1771730 I
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e macNem1.NW_012011356v1    2763841 4 -   2996164 I

a score=211500.000000
s hg38.chr6_GL000254v2_alt   860955  56 +   4827813 -aaaaaaaaaaaaa---------------------------------------------------------------------a---------ttaactgggcat-ggtggcacgcacctgtagtcccagttacta
s panTro5.chr6             29823618  56 + 175400573 -aaaaaaaaaaaaa---------------------------------------------------------------------a---------ttaactgggcat-ggtggcacgcacctgtagtcccagttacta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30058232  63 + 173848474 -aaaaaaaaaaaaa---------------------------------------------------------------------aa---aaaacttaactgggcataggtggcacgcacctgtagtcccagttactA
i panPan2.chr6             C 0 M 479
s gorGor5.CYUI01015250v1    5864744  57 +   6154872 -aaaaaaaaaaaaa---------------------------------------------------------------------aa--------ttaactgggcat-ggtggcacgcacctgtagtcccagttacta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74575761  65 + 122973662 -aaaaaaaaaaaaa---------------------------------------------------------------------aaaaaaaaaattaactgggcat-ggtggcatgcacctgtagtcccagttacta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30055558  56 + 172585720 -aaaacaaaaaaaa---------------------------------------------------------------------a---------ttaactggacat-ggtggcacgcacctgtagtcccagctacta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29718404  56 - 170955103 -aaaaaaaaaaaaa---------------------------------------------------------------------a---------ttaactggacat-ggtggcacgcacctgtagtcccagctacta
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2763845  56 -   2996164 -aaaaaaaaaaaaa---------------------------------------------------------------------a---------ttaactggacat-ggtggcacgcacctgtagtcccagctacta
i macNem1.NW_012011356v1   I 4 C 0
s chlSab2.chr17            28973472  56 -  71996105 -aaaaaaaaaaaaa---------------------------------------------------------------------a---------ttaactggacat-ggtggcacgcacctgtagtcccagctacta
i chlSab2.chr17            I 1 C 0
s colAng1.NW_012115566v1    2608375  55 -   3067355 --aaaaaaaaaaaa---------------------------------------------------------------------a---------ttaactggacat-ggtggcacgcacctgtagtcccagctacta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30046138  94 + 171630274 -aaaagaaaacacacacaca------------------catgcatgcacacacacacataaacacacgca-------------a---------ttagctgggtat-ggtgacatgtgcctgtagtcccagatacta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           194863 125 -    242197 -aaaagaAAAcacacacacatgcacacatgcacatatgcatgcacgcacacacacacacacacacacatacatacGCacacaca---------ttagctgggtat-ggtgacatgtgcctgtagtcccagctacta
i saiBol1.JH378357         C 0 C 0
s otoGar3.GL873550            82888  14 +  18854210 taaaaatagaaaaa--------------------------------------------------------------------------------------------------------------------------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e aotNan1.NW_018509740v1     262517 1620 -    457564 I
e cebCap1.NW_016107755v1     187526 1618 -   1771730 I
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I

a score=281637.000000
s hg38.chr6_GL000254v2_alt   861011 60 +   4827813 gggaggctgaggtgggaggatctcttgagcccaggtggttgaggctgcag-tgagctgtga
s panTro5.chr6             29823674 59 + 175400573 gggaggctgaggtgggagg-tctcttgagcccaggtggttgaggctgcag-tgagctgtga
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5864801 60 +   6154872 gggaggctgaggtgggaggatctcttgagcccaggtggttgaggctgcag-tgagctgtga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74575826 60 + 122973662 gggaggctgaggtgggaggatctcttgagcccaggtggttgaggctgcag-tgagctgtga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30055614 60 + 172585720 ggaaggctgaggtgggaggctctctggagcccaggtggttgaggctgcag-taagccgtga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29718460 60 - 170955103 ggaaggctgaggtgggaggctctctggagcccaggtggttgaggctgcag-taagccgtga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2763901 60 -   2996164 ggaaggctgaggtgggaggctctctggagcccaggtggttgaggctgcag-taagccgtga
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28973528 60 -  71996105 gggaggctgaggtgggaggctctctggagcccaggtggttgaggctgcag-taagccgtga
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2608430 61 -   3067355 ggaaggctgagatgggaggctctctggagcccagctggttgaggctgcagttaggccgtga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30046232 60 + 171630274 gggaggctgatctgggaggatctcttaagcccaggaggctgagggtgcaa-tgagctgtga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           194988 59 -    242197 gggaggctgatctgggaggatctctcgagcccaggaggctgagggtgcag-tgagctgtg-
i saiBol1.JH378357         C 0 C 0
s otoGar3.GL873550            82902 57 +  18854210 ---aaactgaggcaagaggatcacttgagcccaagagttggaggttcagg-tgagccatga
i otoGar3.GL873550         C 0 I 1472
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e aotNan1.NW_018509740v1     262517 1620 -    457564 I
e cebCap1.NW_016107755v1     187526 1618 -   1771730 I
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e panPan2.chr6             30058295 479 + 173848474 M

a score=105424.000000
s hg38.chr6_GL000254v2_alt   861071 27 +   4827813 ttgcaccacctcactccagcctcaa--tt
s panTro5.chr6             29823733 27 + 175400573 ttgcaccacctcactccagcctcaa--tt
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5864861 26 +   6154872 -tgcaccacctcactccagcctcaa--tt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74575886 27 + 122973662 ctgcaccacctcactccagcctCAA--TT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30055674 27 + 172585720 ttgtgccacctcactccagcctCAA--TT
i rheMac8.chr4             C 0 I 2369
s macFas5.chr4             29718520 27 - 170955103 ttgtgccacctcactccagcctCAA--TT
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2763961 27 -   2996164 ttgtgccacctcactccagcctcaa--tt
i macNem1.NW_012011356v1   C 0 I 2345
s chlSab2.chr17            28973588 27 -  71996105 ttgcgccacctcactccagcctCAA--TT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2608491 27 -   3067355 ttgcgccacctcactccagcctCCA--TT
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chr4             30046292 29 + 171630274 ttgcaccactgcactcgagcctCaatttt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           195047 20 -    242197 -------actgcgctccagcctgaa--ct
i saiBol1.JH378357         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e otoGar3.GL873550            82959 1472 +  18854210 I
e aotNan1.NW_018509740v1     262517 1620 -    457564 I
e cebCap1.NW_016107755v1     187526 1618 -   1771730 I
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e panPan2.chr6             30058295 479 + 173848474 M

a score=9680.000000
s hg38.chr6_GL000254v2_alt   861098 4 +   4827813 aaaa
s panTro5.chr6             29823760 4 + 175400573 aaaa
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5864887 4 +   6154872 aaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74575913 4 + 122973662 AAAA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29718548 4 - 170955103 aaat
i macFas5.chr4             I 1 C 0
s chlSab2.chr17            28973615 4 -  71996105 taaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2608519 4 -   3067355 aaaa
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chr4             30046321 4 + 171630274 aaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           195067 4 -    242197 aaaa
i saiBol1.JH378357         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e otoGar3.GL873550            82959 1472 +  18854210 I
e aotNan1.NW_018509740v1     262517 1620 -    457564 I
e cebCap1.NW_016107755v1     187526 1618 -   1771730 I
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e macNem1.NW_012011356v1    2763988 2345 -   2996164 I
e rheMac8.chr4             30055701 2369 + 172585720 I
e panPan2.chr6             30058295 479 + 173848474 M

a score=14840.000000
s hg38.chr6_GL000254v2_alt   861102 7 +   4827813 aaataaa
s panTro5.chr6             29823764 7 + 175400573 aaataaa
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5864891 7 +   6154872 aaataaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74575917 7 + 122973662 AAATAAA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29718552 7 - 170955103 aaataaa
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            28973619 7 -  71996105 aaataaa
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30046325 7 + 171630274 aaattaa
i calJac3.chr4             C 0 I 1492
s saiBol1.JH378357           195071 7 -    242197 aaaaaaa
i saiBol1.JH378357         C 0 I 1199
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e otoGar3.GL873550            82959 1472 +  18854210 I
e aotNan1.NW_018509740v1     262517 1620 -    457564 I
e cebCap1.NW_016107755v1     187526 1618 -   1771730 I
e colAng1.NW_012115566v1    2608523 0 -   3067355 C
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e macNem1.NW_012011356v1    2763988 2345 -   2996164 I
e rheMac8.chr4             30055701 2369 + 172585720 I
e panPan2.chr6             30058295 479 + 173848474 M

a score=2730.000000
s hg38.chr6_GL000254v2_alt   861109 2 +   4827813 ta
s panTro5.chr6             29823771 2 + 175400573 ta
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5864898 2 +   6154872 ta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74575924 2 + 122973662 TA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29718559 2 - 170955103 ta
i macFas5.chr4             C 0 I 2339
s chlSab2.chr17            28973626 2 -  71996105 ta
i chlSab2.chr17            C 0 I 11
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e saiBol1.JH378357           195078 1199 -    242197 I
e otoGar3.GL873550            82959 1472 +  18854210 I
e aotNan1.NW_018509740v1     262517 1620 -    457564 I
e cebCap1.NW_016107755v1     187526 1618 -   1771730 I
e calJac3.chr4             30046332 1492 + 171630274 I
e colAng1.NW_012115566v1    2608523 0 -   3067355 C
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e macNem1.NW_012011356v1    2763988 2345 -   2996164 I
e rheMac8.chr4             30055701 2369 + 172585720 I
e panPan2.chr6             30058295 479 + 173848474 M

a score=87100.000000
s hg38.chr6_GL000254v2_alt   861111 168 +   4827813 gggctgggcacggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtgaatcacgaggtcaggcaatcgagaccatcctggctaacacggtgaaaccccgtctctacttaaaaaatacaaaaaattagccaggcgtggtggcacacacctgtgatct
s panTro5.chr6             29823773 168 + 175400573 gggctgggcacggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggcggatcacgaggtcaggcgatcgagaccatcctggctaacacggtgaaaccccgtctctacttaaaaaatacaaaaaattagccaggcgtggtggcacacacctgtgatct
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5864900 166 +   6154872 gggctggtcacggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggtggatcat-aggtcaggcaatcgagaccatcctggctaacatggtgaaacccc-tctctacttaaaaaatacaaaaaattagccaggcgtggtggcacacacctgtgatct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74575926 168 + 122973662 Gggctgggcacgatggctcatgcctgtaatcccagcactttgggaggccgaggcaggtggatcacaaggtcaagagatcaagaccatcctggctaacatggtgaaaccccatctctacttaaaaaatacaaaaaattagccaggcgtggtggcacacacctgtaatct
i nomLeu3.chr1a            C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e saiBol1.JH378357           195078 1199 -    242197 I
e otoGar3.GL873550            82959 1472 +  18854210 I
e aotNan1.NW_018509740v1     262517 1620 -    457564 I
e cebCap1.NW_016107755v1     187526 1618 -   1771730 I
e calJac3.chr4             30046332 1492 + 171630274 I
e colAng1.NW_012115566v1    2608523   0 -   3067355 C
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e chlSab2.chr17            28973628  11 -  71996105 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e macNem1.NW_012011356v1    2763988 2345 -   2996164 I
e macFas5.chr4             29718561 2339 - 170955103 I
e rheMac8.chr4             30055701 2369 + 172585720 I
e panPan2.chr6             30058295 479 + 173848474 M

a score=95774.000000
s hg38.chr6_GL000254v2_alt   861279 112 +   4827813 cagctacttgggaggctgaggcaggagaaacgcttaaactcaggaggcggaggttgcagtgagccgagatggtgccactgcactccaacctgggcgacaaagactccatctc
s panTro5.chr6             29823941 112 + 175400573 cagctacttgggaggctgaggcaggagaatcgcttaaactcgggaggcggaggttgcagtgagccgagatggcgccactgcactccagcctgggcgacaaagactccatctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30058774 112 + 173848474 cagctacttgggaggctgaggcaggagaatcgcttaaactcgggaggcggaggttgcagtgagccgagatggcgccactgcactccagcctgggtgacaaagactccatctc
i panPan2.chr6             M 479 C 0
s gorGor5.CYUI01015250v1    5865066 110 +   6154872 cagctacttgggaggctga-gcagaagaatcgcttaaactcaggaggcgga-gttgcagtgagccgagatggcgccactgcactccagcctgggcgacaaagactccatctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74576094 112 + 122973662 cagttacttgggaggctgaggcaggagaatcacttaaacccgggaggtggaggttgcagtgagccgagatggcaccactgcactgcagcctgggtgataaagactccatctc
i nomLeu3.chr1a            C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e saiBol1.JH378357           195078 1199 -    242197 I
e otoGar3.GL873550            82959 1472 +  18854210 I
e aotNan1.NW_018509740v1     262517 1620 -    457564 I
e cebCap1.NW_016107755v1     187526 1618 -   1771730 I
e calJac3.chr4             30046332 1492 + 171630274 I
e colAng1.NW_012115566v1    2608523   0 -   3067355 C
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e chlSab2.chr17            28973628  11 -  71996105 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e macNem1.NW_012011356v1    2763988 2345 -   2996164 I
e macFas5.chr4             29718561 2339 - 170955103 I
e rheMac8.chr4             30055701 2369 + 172585720 I

a score=5460.000000
s hg38.chr6_GL000254v2_alt   861391 4 +   4827813 aaat
s panTro5.chr6             29824053 4 + 175400573 aaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30058886 4 + 173848474 aaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5865176 4 +   6154872 aaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74576206 4 + 122973662 aaat
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            28973639 4 -  71996105 aaat
i chlSab2.chr17            I 11 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e saiBol1.JH378357           195078 1199 -    242197 I
e otoGar3.GL873550            82959 1472 +  18854210 I
e aotNan1.NW_018509740v1     262517 1620 -    457564 I
e cebCap1.NW_016107755v1     187526 1618 -   1771730 I
e calJac3.chr4             30046332 1492 + 171630274 I
e colAng1.NW_012115566v1    2608523 0 -   3067355 C
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e macNem1.NW_012011356v1    2763988 2345 -   2996164 I
e macFas5.chr4             29718561 2339 - 170955103 I
e rheMac8.chr4             30055701 2369 + 172585720 I

a score=604285.000000
s hg38.chr6_GL000254v2_alt   861395 341 +   4827813 aaataaataaataaataagagaaaaGTATGTCATGtgtaaaccaaaaataaaattctaagccccctaactgacaggaagaaaggtaagacatgccaatgataccctccttcctctggagtttagggacaactgaccagcattaacattacaatagagatcataagactgacaaaagattctctgtagcaataaaatagtcaactccaacctgactctgatacagcatcacaccacagatagcaggccctgaaggaaatcaaagtattttaccccaaaatatacttatttgac--attttgaaatgactctgcaaagccatttcttgtcatggggatttgcatt
s panTro5.chr6             29824057 340 + 175400573 aaataaataaataaa-aagagaaaaGTATGTCATGtgtaaaccaaaaataaaattctaagccccctaactgacaggaagtgaggtaagacatgccagtgataccctccttcctctggagtttagggacaactgaccagcattaacattacaatagagattgtaagactgacaaaagattctctgtagcaataaaatagtcaactccaacctgactctgatacagcatcacatcacagatagcaggccctgaaggaaatcaaagtattttaccccaaaatatacttatttgac--attttgaaatgactctgcaaagccatttcttgtcatggggatttgcatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30058890 340 + 173848474 aaataaataaataaa-aagagaaaaGTATGTCATGtgtaaaccaaaaataaaattctaagccccctaactgacaggaagtgaggtaagacatgccagtgataccctccttcctctggagtttagggacaactgaccagcattaacattacaatagagattgtaagactgacaaaagattctctgtagcaataaaatagtcaactccaacctgactctgatacagcatcacatcacagatagcaggccctgaaggaaatcaaagtattttaccccaaaatatacttatttgac--attttgaaatgactctgcaaagccatttcttgtcatggggatttgcatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5865180 340 +   6154872 aaataaataaataaataagagaaaaGTATGTCATGtgtaaaccaaaaataaaattctaagccccctaactgacaggaagaga-gtaagacatgccagtgataccctccttcctctggagtttagggacaactgaccagcattaacattacaatagagatcataagactgacaaaagattctctgtagcaataaaatagtcaactccaacctgactctgatacagcatcacatcacagatagcaggccctgaaagaaatcaaagtattttaccccaaaatatacttatttgac--attttgaaatgactctgcaaagccatttcttgtcatggggatttgcatt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74576210 334 + 122973662 aaataaataaataaa-taaataaaAGTATGTCACGtgtaagccaaaaataaaattctaagccccctaactgacaggaagggaggtaagacatgccagtgataccctccttcctctggagtttagggacaactgaccagcattaa------aatagagatcataagactgacaaaagattctctgtagcaataaaatagtcaactccaacctgactctggtatagcatcacatcacagatagcaggccctgaaggaaatcaaagtattttaccccaaaatatatttatttgac--attttgaaatgactttgcaaagccatttcttgtcatgaggatttgcatt
i nomLeu3.chr1a            C 0 I 121
s chlSab2.chr17            28973643 341 -  71996105 aaataaataaataaataa-ataaatgtatgtcatgtataaaccaaaaataaaattctcagctccccaactgacaggaagagaggtaagacatgccagtgataccctccttcctttggagtttagggacaactgaccagcattaacattaaaatagagatcataagactgacaaaagattctctgtggcaataaaatagtcaactccagcctgactctggtatagcatcacatcacagatagcaggccctaaagaaaatcaaagta-tttaacccaaaatatatttctttgacatattttgaaatgactctgcaaagccatctcttgtcgtggggatttgcatt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2608523 343 -   3067355 aaataaataaataaataaGAGAAAAGTATCTCATGTATAAACCAAAAATAAACTTCTCAGCTCCCCAGCtgacaggaagagaggtaagacatgccagtgataccctccttcctttggagtttagggacaactgaccagcactaacattaaaatagagatcataagactgacaaaagattctctgtggcaataaaatagtcaactccaacctgactctggtatagcatcacatcacagatagcaggccctgaaggaaatcaaagtattttaccccaaaatatatttctttgacatattttgaaatgactctgcaaagccatctcttgtcgtggggatttgcatt
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e saiBol1.JH378357           195078 1199 -    242197 I
e otoGar3.GL873550            82959 1472 +  18854210 I
e aotNan1.NW_018509740v1     262517 1620 -    457564 I
e cebCap1.NW_016107755v1     187526 1618 -   1771730 I
e calJac3.chr4             30046332 1492 + 171630274 I
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e macNem1.NW_012011356v1    2763988 2345 -   2996164 I
e macFas5.chr4             29718561 2339 - 170955103 I
e rheMac8.chr4             30055701 2369 + 172585720 I

a score=775172.000000
s hg38.chr6_GL000254v2_alt   861736 587 +   4827813 ttgtagagaatccccttccccttccaggtctttttctgatccaggagggattttactaat--gagtctgacatcttttaaggtgcgataagaaacatttaccatctattctttctgaggcctggaagcttcatctacgtaacaagaatctttgcttccacaaacatctcccccaacgccacctccacgcccc-----cttaactcaagcatttctttctgctgacttcaactctttaggcagggcttaactttttcaaccaattggcaatcagaaaatctgaatc-cccctatgacctgtgagctcccttgcttcgagatgtcccgcctttctgagctgaaccaatatataccttacatgtattgatttatgtctttgtcagcaacttctggctccctaaaatgtatgaaaccaagctgtaacccaaccaccttgggcacatgttctcaggaactcctcag----------------------------aatggctcagaataaacctcttcaaatattttacaaattttacttttttcatcaacaaataaatgtataaaatatatgtagatactaccaaaaaatatacacaaatctactataaaaaccaaaaatttggccag
s panTro5.chr6             29824397 619 + 175400573 ttgtagagaatccccttccccttccaggtttttttctgatccaggagggattttactaat--gagtctgacatcttttaaggtgcgataagaaacatttaccatctattctttctgaggcctggaagcttcatctacataacaagaatctttgcttccacaaacatctcccccaatgccacctccacgcccccttatcttaactcaagcatttctttctgctgacttcaactctttaggcagagcttaactttttcaaccaattggcaatcagaaaatctgaatc-cccctatgacctgtgagctcccttgcttcgagatgtcccgcctttctgagctgaaccaatgtataccttacatgtattgatttatgtctttgtcagcaacttctggctccctaaaatgtatgaaaccaagctgtaacccaaccaccttgggcacatgttctcaggaactcctcaggctgtgtcacaggccatggtcactcataaatggctcagaataaacctcttcaaatattttataaattttacttttttcatcaacatataaatgtataaaatatatgtagatactaccaaaaaatatacacaaatctac-aaaaaaaacaaaaatttggccag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30059230 619 + 173848474 ttgtagagaatccccttccccttccaggtttttttctgatccaggagggattttactaat--gagtctgacatcttttaaggtgcgataagaaacatttaccatctattctttctgaggcctggaagcttcatctacataacaagaatctttgcttccacaaacatctcccccaacgccacctccacgcccccttatcttaactcaagcatttctttctgctgacttcaactctttaggcagagcttaactttttcaaccaattggcaatcagaaaatctgaatc-cccctatgacctgtgagctcccttgcttcgagatgtcccgcctttctgagctgaaccaatgtataccttacatgtattgatttatgtctttgtcagcaacttctggctccctaaaatgtatgaaaccaagctgtaacccaaccaccttgggcacatgttctcaggaactcctcaggctgtgtcacaggccatggtcactcataaatggctcagaataaacctcttcaaatattttataaattttacttttttcatcaacatataaatgcataaaatatatgtagatactaccaaaaaatatacacaaatctac-aaaaaaaacaaaaatttggccag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5865520 614 +   6154872 ttgtagagaatccccttccccttccaggtctttttctgatccaggagggattttactaat--gagtctgacatcttttaaggtgcgataagaaacatttaccatctattctttctgaggcctggaagcttcatctacataacaagaatctttgcttccacaaacatctcccccaacgctacctccacgcccc-----cttaactcaagcatttctttctgctgacttcaactctttaggcagagcttaactttttcaaccaattggcaatcagaaaatctgaatc-cccctatgacctgtgagctcctttgcttcgagatgtcccgcctttctgagctgcaccaatgtataccttacatgtattgatttatgtctttgtcagcaacttctggctccctaaaatgtatgaaaccaagctgtaacccaaccaccttgggcacatgttctcaggaactcctcaggctgt-tcacaggccatggtcactcacaaatggctcagaataaacctcttcaaatattttacaaattttacttttttcatcaacaaataaatgtataaaatatatgtagatactaccaaaaaatatacacaaatctactataaaaaacaaaaatttggccag
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            28973984 620 -  71996105 ttgcagagaatctccttccccttccaggtatttttctgatccaggagagattttactaataagagtctgacgtcttttaaggtgcgataagaaacatttatcatctattatttctgaggcctgtaagcttcaactacgtaacaagaatctttgcgtccacaaacatctcccccaacgccacctacatgcccccttatcttaactcaagtatttctttctgctgacctcaactctctaggtagagcttaactttctcaaccaattggcagtcagaaaatctgaatcacccctatgacctgtgagctcccttgctttgagatgtcccgcctttctgagctgaaccaatgtatactttacatgtattgatttatgtctttgtcagcaacttatggctccctaaaatgtacgaaaccaagctgtaacccaaccatcttgggcaca---tctcaggatctcctcaggctgtgtcacaggccacggtcactcataaatggctcagaataaacctcttcaaatattttacatatttggcttttttcatcaacacataaatgtataaaatatatggagatactaccaaaaaatacacacaaatctactataaaaaacaaaaatttggccag
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2608866 623 -   3067355 ttgtagagaatcccgttccccttccaggtattcctctgatccaggagagattttactaataagagtctgatgtcttttaaggtgcgataagaaacatttatcatctattatttctgaggcctggaagcttcaactacataacaagaatctttgcatccacaaacatctcccccagcgccacctacatgccccattatcttaattcaagcatttctttctgctgacctcaactctttaggcagagcttaactttctcaaccaattggcaatcagaaaatctgaataacccctatgacctgtgagctcccttgctttgagatgtcccgcctttctgagttgaaccaatgtataccttacatgtattgatttatgtctttgtcagtgacttatggcttcctaaaatgtacaaaaccaagctgtaacccaaccatcttgggcacatcttctcaggatctcttcaggctgtgtcacaggccatgatcactcataaatggctcagaataaacctcttcaaatattttacatatttggcttttctcatcaacacataaatgtataaaatacatgtagatactaccaaaaaatatacacaaatctactataaaaaacaaaaatttggccag
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e saiBol1.JH378357           195078 1199 -    242197 I
e otoGar3.GL873550            82959 1472 +  18854210 I
e aotNan1.NW_018509740v1     262517 1620 -    457564 I
e cebCap1.NW_016107755v1     187526 1618 -   1771730 I
e calJac3.chr4             30046332 1492 + 171630274 I
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e macNem1.NW_012011356v1    2763988 2345 -   2996164 I
e macFas5.chr4             29718561 2339 - 170955103 I
e rheMac8.chr4             30055701 2369 + 172585720 I
e nomLeu3.chr1a            74576544 121 + 122973662 I

a score=72045.000000
s hg38.chr6_GL000254v2_alt   862323 57 +   4827813 gcacttagggaggct-aggtgggcagattgcttgaatccaggagttcatgaccaatcc
s panTro5.chr6             29825016 57 + 175400573 gcacttagggaggct-aggtgggcagattttttgaatccaggagttcatgaccaatcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30059849 57 + 173848474 gcacttagggaggct-aggtgggcagattttttgaatccaggagttcatgaccaatcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5866134 56 +   6154872 gcactta-ggaggct-agatgggcagattgcttgaatccaggagttcatgaccaatcc
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            28974604 58 -  71996105 gcactttgggaggctgaggtgggcagattgcttgaatccaggagtccatgaccaatct
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2609489 58 -   3067355 gcactttgggaggctgaggtgggcagattgcttgaatccaggagtccacgaccaatcc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30047824 34 + 171630274 gcactttgggaggccgaggcaggt------------------------tgaccaccct
i calJac3.chr4             I 1492 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e saiBol1.JH378357           195078 1199 -    242197 I
e otoGar3.GL873550            82959 1472 +  18854210 I
e aotNan1.NW_018509740v1     262517 1620 -    457564 I
e cebCap1.NW_016107755v1     187526 1618 -   1771730 I
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e macNem1.NW_012011356v1    2763988 2345 -   2996164 I
e macFas5.chr4             29718561 2339 - 170955103 I
e rheMac8.chr4             30055701 2369 + 172585720 I
e nomLeu3.chr1a            74576544 121 + 122973662 I

a score=346334.000000
s hg38.chr6_GL000254v2_alt   862380 199 +   4827813 gagcaatatggtaaaaccccatctctactaa-aaatacaaaaaat---ttgtccggcatggtggcatgtatctgcagtcccagctacccaggaggctgaggtaggaggatcacctgagcctaggaggttgaggctgaagtgagccaagatcacgccactgcactccagcctgggcaacaga-gtgagaccatgtctcaaaaaat----------
s panTro5.chr6             29825073 199 + 175400573 gagcaatatggtaaaaccccatctctactaa-aaatacaataaat---ttgtccggcatggtggcatgtatctgcagtcccagctacccaggaggctgaggtaggaggatcacctgagcctaggaggttgaggctgaagtgagccaagatcacaccactgcactccagcctgggcaacaga-gtgagaccatgtctcaaaaaat----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30059906 199 + 173848474 gagcaatatggtaaaaccccatctctactaa-aaatacaataaat---ttgtccggcatggtggcatgtatctgcagtcccagctacccaggaggctgaggtaggaggatcacctgagcctaggaggttgaggctgaagtgagccaagatcacaccactgcactccagcctgggcaacaga-gtgagaccatgtctcaaaaaat----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5866190 197 +   6154872 aagcaatatggtaaaaccccatctctactaa-aaacacaaaaaat---ttgtccggcatggt-gcatgtatctgcagtcccagctacccaggaggctgaggtaggaggatcacctgagcctaggagg-tgaggctgaagtgagccaagatcatggcactgcactccagcctgggcaacaga-gtgagaccatgtctcaaaaaat----------
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            28974662 199 -  71996105 gagcaacatagtaaaaccccatctctactaa-aaatacaaaaaat---ttgctgggcatggtggcatgtaactacagtcccagctacccaggagactgaggtaggaggatcacctgagcctgggaggttgaggctgaagtgagccaagatcatgccactgcactccagtgtggggaacaga-gtgagaccttgtctcaaaaaat----------
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2609547 199 -   3067355 gagcaacacagcaaaaccccatctctactaa-aaatacaaaaaat---ttgctgggcatggtggtatgtacctacagtcccagctacccaggaggctgaggtaggaggatcacctgagcctgggaggttgaggctgaagtgagccaagatcatgccactgcactccagtgtaggcaataga-gtgagaccttgtctcaaaaaat----------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30047858 210 + 171630274 ggtcaacatggtgaaaccccgtctctactaa-aaatacaaaaaat---tagctgggcatggtggtgcgtgcctgtaatcccagctactcaggaggctgaggcaggagaattgcctgaacccaggaggtggaggttgtggtgagccgagattgcgccattgcactcaggcctgggtaacaagagcggaactctgtctcaaaaaaaaaaaaaaaaa
i calJac3.chr4             C 0 I 3
s saiBol1.JH378357           196277 182 -    242197 ggacaacagagtgagaccttgtctcaaaaaataaataaataaaaTTTATCACAgggcacggaagctcaggcttgtaatcccagtactttgggaggtccaggtgggtggatcacctgaggttgggagttcaaga-------------------------------ccagcctggccaacatg-gtgaaaccccatctctaaaaaaattaaaaaat
i saiBol1.JH378357         I 1199 I 4
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e otoGar3.GL873550            82959 1472 +  18854210 I
e aotNan1.NW_018509740v1     262517 1620 -    457564 I
e cebCap1.NW_016107755v1     187526 1618 -   1771730 I
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e macNem1.NW_012011356v1    2763988 2345 -   2996164 I
e macFas5.chr4             29718561 2339 - 170955103 I
e rheMac8.chr4             30055701 2369 + 172585720 I
e nomLeu3.chr1a            74576544 121 + 122973662 I

a score=863411.000000
s hg38.chr6_GL000254v2_alt   862579 267 +   4827813 aaataaaatttatcaaaacttacgcacacacttacagaccatacataa-gccactcaaagtcaagagaaagcttaacaaaagatgcagaattaaatcataacggcataaaattaactgtagtgtatactgttctactg---taatttgatagccacctcctcttactattgcaaagagc-tcaactgttgcaagtatctgcctaaaatgccaagtgacactaatcatctctgcatgagcagttcatctatccagtaaattgtgtatagcagt
s panTro5.chr6             29825272 266 + 175400573 aaataaaacttatcaaaacttacgcacacacttacagaccacacataa-gccactcaaagtcaagagaaagcttaacaaaagatgcagacttaaatcataatggcataaaattaactgtagtgtatactgttctactg---taatttgatagccacct-ctcttactattgcaaagagc-tcaactgttgcaagtatctgcctaaaatgccaagtgacactaatcatctctgcatgagcagttcatctatacagtaaattgtgtatagcagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30060105 266 + 173848474 aaataaaacttatcaaaacttacgcacacacttacagaccacacataa-gccactcaaagtcaagagaaagcttaacaaaagatgcagacttaaatcataatggcataaaattaactgtagtgtatactgttctactg---taatttgatagccacct-ctcttactattgcaaagagc-tcaactgttgcaagtatctgcctaaaatgccaagtgacactaatcatctctgcatgagcagttcatctatacagtaaattgtgtatagcagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5866387 264 +   6154872 aaataaaatttatcaaaacttacgcaca-acttacagaccacacataa-gccactcaaagtcaagagaaagcttaacaaaagatgcagaattaaatcataacggcataaaattaactgtagtgtatactgtt-tactg---taatttgatagccacctcctcttactattgcaaagagc-tcaactgttgcaagtatctgcctaaaatgccaagtgacactaatcatctctgcatgagcagttcat-tatccagtaaattgtgtatagcagt
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            28974861 267 -  71996105 aaatagaatttatcaaaacttatgcacacacttacagaccacgcatga-gccattcgaagtccagagaaagcttaacaaaagatgcagaattaaatcataatggcaaaaaattaactgtagtgtatactgttctactg---taatttgatagccacttcctcttactattgcaatgagc-tcaattgttgcaagtatctgcctaaaatgccatgtgacactaatcatctctgcatgagcagctcatctatccagtaaattgtgtatagcagt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2609746 261 -   3067355 aaacagaatttatcaaaacttatgcacacacttacagaccacatatga-gccattcaaagtcaagagaaagcttaacaaaagatacagaattaaatcataatggcaaaaaattaactgtagtgtatactgttctac----------tgatagccacttcctcctatcattgcaatgagcttcaattgttgcaagtatctgcctaaaattccatgtgacactaatcatctctgcatgagcagctcatctatccagtaaattgtgtatagcagt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30048071 211 + 171630274 -------------------------------------------------------caaagtcaagaaaaagcttaacaaaagatgcagaaataaatcataatggcataaaattaactgtagcacataccatactactgtaataatttcataggcacctcctcttactattgcaat-agc-ttaattgttgcaagtatctgcctaaaatgccatatgacactaatcatttctgcatg---agttcatctctcc-gtaaattgtgtatcgcatg
i calJac3.chr4             I 3 C 0
s saiBol1.JH378357           196463 268 -    242197 taataaaatttatcaaaacttatgcacacacttagagaccacacgtggtgccattcaaagtcaagagaaagcttaacaaaagatgcagaaataaatcataattgcataaaattaactgtagcacataccatactactg---taatttcataggcacctcctcttactattgcaatgagc-tcagttgttgcaagtgtctgcctaaaatgccacgtgacactaatcatctctgcatgagcagttcatctctccagtaaattgtgtatagcagt
i saiBol1.JH378357         I 4 C 0
s cebCap1.NW_016107755v1     189144 268 -   1771730 aaataaaatttatcaaaacttatgaacacacttacagaccacacgtggtgccattcaaagtcaagagaaagcttaacaaaagatgcagaaataaatcataattgcgtaaaattaactgtagcacataccatactactg---taatttcataggcacctcctcttactattgcaatgagc-tcaattgttgcaagtatctgcctaaaatgccatgtgacactaatcatctctgcatgagcagtacatctctccagtaaattgtgtatagcagt
i cebCap1.NW_016107755v1   I 1618 C 0
s aotNan1.NW_018509740v1     264137 270 -    457564 aaataaaatttataaaaacttatgcatacacttacagaccacacgtggtgccattcaaagtcaagagaaaacttaacaaaagatgcagaaataaatcataatggcataaaattaactgtagcatataccatactactgtagtaatttcataggcacctcctcttactattgcaat-agc-tcaattgttgcaagtatctgcctaaaatgccatgtgacactaatcttctctgcatgagcagttcatctctccagtaaattgtgtatagcagt
i aotNan1.NW_018509740v1   I 1620 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e otoGar3.GL873550            82959 1472 +  18854210 I
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e macNem1.NW_012011356v1    2763988 2345 -   2996164 I
e macFas5.chr4             29718561 2339 - 170955103 I
e rheMac8.chr4             30055701 2369 + 172585720 I
e nomLeu3.chr1a            74576544 121 + 122973662 I

a score=3345869.000000
s hg38.chr6_GL000254v2_alt   862846 923 +   4827813 aaagagtggtctctcaagattcttgcatatatttcatcatgtctagagcaatactgtgaaccttaaataacaccatagggcccatatgaagtgccaacagtgatgctggaagttctcccaagaagc-----aaagtcatgactctataa--a---aagttgaattgcttgatatacaccatagat----------caaggtctgttgctggggttg-ctgccatttcagacagacgattcatcatgtaa----atgatgtaaacttaaggcatcaataaatacagtatagtaccctatatgtatt-----ttccttacaattttcttgataacatttccttttctctagcttactttattataagaatac-atatataagatgtatagcatacaaaatatgtgttgatcaactgtttacactactagtaaggctttcagtcaacagtaagctattagtagctaagtttggagagagtc--aacagttatgtgcagattttcgtttgtgtgtggggtcagtaaccctaaaccccaagttgttcaaggggcaactATATGAGCTCCAAAttc-----------------------------------------------------------------------------ttttttttttttttttgagtcagagtctcgctctgtcaaccaggatggagtgcaatggcacgatctctgctcactgcaacctccgcctcccaggttcaagcaattctcctgccttaccctaccaagtagctggaattacaggtgcctgccaccacacccggctaatttttgtatttttagtagagacagggtttcaccatgttgcccaggctggtgtcaaactcttgacctgaagtgatcccccagcttcagcctcccaaagtgctggcattacaggcatgagccaccacacccagccatgagcccaaattctaactgcccctttgcattgttcaccactgggtactcccatgtgtacatgcatgaagcaaatgttaataaacttc
s panTro5.chr6             29825538 926 + 175400573 aaagagtggtctctcaagattcttgcatatatttcatcatgtctagagcaatactgtgaaccttaaataacaccataggacccatatgaagtgccaacagtgatgctggaagttctaccaagaagc-----gaagtcatgactctataa--a---aagttgaattgcttgatatacaccatagat----------caaggtctgttgctggggttg-ctgccatttcagacagacgattcatcatgtaa----atgatgtaaacttaaggcatcaataaatacggtatagtaccctatatgtatt-----ttccttacaattttcttgataacatttccttttctctagcttactttattataggaatac-atatataagatgtatagcatacaaaatatgtgttgatcaactgtttacactactagtaaggctttcagtcaacagtaagctattagtagctaagtttggagagagtc--aacagttatgtgcagattttcgtttgtgtgtggggtcggcaaccctaagccccaagttgttcaaggggcaactgTATGAGCTCCAAAttc-----------------------------------------------------------------------t-ttttttttttttttttttttgagtcagagtctcg--ctgtcacccaggatggagtgcaatggcgcgatctctgctcactgcaacctccgcctcccaggttcaagcaattctcctgccttaccctaccgagtagctggaattacaggtgcctgccaccacacccggctaatttttgtatttttagtagagacagggtttcaccatgttgcccaggctggtgtcaaactcttgacctgaagtgatcccccagcttcagcctcccagagtgctggcattacaggcgtgagccaccacgcccagccatgagcccaaattctaaccgcccctttgcattgttcaccactgggtactcccatgtgtacatgcatgaagcaaatgttaataaacttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30060371 923 + 173848474 aaagagtggtctctcaagattcttgcatatatttcatcatgtctagagcaatactgtgaaccttaaataacaccataggacccatatgaagtgccaacagtgatgctggaagttctaccaagaagc-----gaagtcatgactctataa--a---aagttgaattgcttgatatacaccatagat----------caaggtctgttgctggggttg-ctgccatttcagacagacgattcatcatgtaa----atgatgtaaacttaaggcatcaataaatacggtatagtaccctatatgtatt-----ttccttacaattttcttgataacatttccttttctctagcttactttattataggaatac-atatataagatgtatagcatacaaaacatgtgttgatcaactgtttacactactagtaaggctttcagtcaacagtaagctattagtagctaagtttggagagagtc--aacagttatgtgcagattttcgtttgtgtgtggggtcggcaaccctaagccccaagttgttcaaggggcaactgTATGAGCTCCAAAttc---------------------------------------------------------------------------ttttttttttttttttttgagtcagagtctcg--ctgtcacccaggatggagtgcaatggcgcgatctctgctcactgcaacctccgcctcccaggttcaagcaattctcctgccttaccctaccgagtagctggaattacaggtgcctgccaccacacccggctaatttttgtatttttagtagagacagggtttcaccatgttgcccaggctggtgtcaaactcttgacctgaagtgatcccccagcttcagcctcccagagtgctggcattacaggcgtgagccaccacgcccagccatgagcccaaattctaactgcccctttgcattgttcaccactgggtactcccatgtgtacatgcatgaagcaaatgttaataaacttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5866651 924 +   6154872 aaagagtggtctctcaagattcttgcatatatttcatcatgtctagagcaatactgtgaaccttaaataacaccataggacccatatgaagtgccaacagtgatgctggaagttctcccaagaagc-----aaagtcatgactctataa--a---aagttgaattgcttgatatacactacagat----------caaggtctgttgctgggtttg-ctgccatttcagacagacgattcatcatgtaa----atgatgtaaacttaaggcatcaataaatacagtacagtaccctatatgtatt-----ttccttacaattttcttgataacatttccttttctctagcttactttattataagaatac-atatataagatgtatagcatacaaaatatgtgttgatcaactgtttacactactagtaaggctttcagtcaacagtaagctattagtagctaagtttggagagagtc--aacagttatgtgcagattttcgtttgtgtgtggggtcggcaaccctaagccccaagttgttcaaggggcaactgTATGAGCTCCAAAttc----------------------------------------------------------------------------tttttttttttttttttgagtcagagtctcactctgtcaaccaggatggagtgcaatggcgcgatctctgctcgctgcaacctccgcctcccaggttcaagcaattctcctgccttaccctaccgagtagctggaattacaggtgcctgccaccacacccggctaatttttgtatttttagtagagacagggtttcaccatgttgcccaggctggtgtcaaactcttgacctgaagtgatcccccagcttcagcctcccaaagtgctgacattacaggcgtgagccaccacgcccagccatgagcccaaattctaaccgcccctttgcattgttcaccactgggtactcccatgtgtacatgcatgaagcaaatgttaataaacttc
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            28975128 902 -  71996105 aaagagtgatcgctcaagattcttgcatatatttcatcatgtctagagcaataccacaaaccttaaataacaccataggacccaaatgaagtgtcaatagtgatgctggaagttctcccaagaagcagagaaaagtcatgactctacaa--a---aagttgaattgctcgatatacaccatagattgaggtccattgaggtccattgctggggttg-ctgccatttcagacagacaattcatcatgtaa----atgatgtaaacttaaggtatcaataaacacagtatggtgccctatatgtatt-----ttccttacgattttcttgataacatttccttttctctagcttactttattgtaagaagac-atatataagacgtatagcatacaaaatatgtgttgatcaactgtttatgttactggtaagactttcagtcaacagtaagctattagtagctaagtttg----gagtc--aaaagttatgtgtagattttcgtgtgtgtgtggggtcggcaaccctaagccccaagttgttcaaggggcaactCTATGAGCTCCAAATTC-----------------------------------------------------------------------CCtttttcttttttcgttttttgagtcagagtctcgttttgtcacccaggctggagtgcaacggcgcaatctttgctcactgcaacctctgcctcccagattcaagcaattctcctgcct-------------------------------------ccacaatcggctaatttttgtatttttagtagagacgaggtttcaccatgttgcccaggctggtctaaaactcctgacctcaagtgatgcccc-gttttggcctcccaaagtgctggcattacaggcgtgagccaccacgcccagccatgagcccttattctagctacccctttgcattgttcaccactggatactcccatgtgtacatgcatgaagccaatgttaataaacttc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2610007 900 -   3067355 aaagagtgattgctcaagattcttgcatatatttcatcatgtctagagcaataccataaaccttaaataacaccataggacccatatgaagtgtcaatagtgatgctggaagttctcccaagaagcagagaaaagtcatggctctataa--a---aagttgaattgcttgatatacaccatagattgaggtccactgaggtccattgctggggttg-ctgccatttcagacagacaattcatcatgtaa----atgatgtaaacttaaggtatcaataaacacagtatagtgccctatatatatt-----ttccttacgattttcttgataacatttccttttctctagcttactttattgtaagaatac-atatataagacgtatagcatacaaaatatgtgttgatcaactgtttatgttactggtaagactttcagtcaacagtaagctattagtagctaagtttg----gagtc--aaaagttatgtgcagattttcgtgtgtgtgtgggattggcaaccctaagccccaagttgttcaaggggcaactgTATGAGCTCCAAATTC-----------------------------------------------------------------------C--tttttttttttctttttttgaatcagagtctcgttttgtcacccaggctggtgtgcaacggcacaatctttgctcactgcaacctctgcctcccggattcaagcaattctcctgcct-------------------------------------ccacaaccagctaatttttgtatttttagtagagacgaggtttcaccatgttgcccaggctggtctaaaactcctgacctcaagtgatcccca-gctttggcctcccaaagtgctggcattacaggcatgagccaccacacccagccatgagcccttattctaactacccctttgcattgttcaccactgggtactcccatgtgtacatgcatgaagccaatgttaataaacttc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30048282 907 + 171630274 ataaagtgatctctcaagattcttacatatatttcatcatgtctagagcaatactgcaaaccttaaataacaccatggaacccatatgaagtaccactagtgacactgggaattctcgcaaaaagcagataaaagtcatga--ctataa--a---aagttgaatcgcttgatatacaccatagat----------ggaggtctgttgctggggttg-ctgccatttcagatggacaattcatcttgtaa----atgatgtaaacttaaggtattaataaataaaatatagtagcctatatgtatt-----ttccttatgattttcttgataacatttacttttctctagcttactttattgtaagaatgc-acatataacatgtatagcatataaaatacgtgttgatcaactgtttgtgttactggtaaggctttcagtcaacagtaagctattaatagctaagtttggggagaatc--aaaagttatatacagattttcatttgtgtgtgaggtcagcaa-cctaagccccaagttgttctagaggcaactgTATAAGCTCCAAattg---------------------------------------------------------------------cttttttttatgatgattatttttgagatggagtctcc-tctgccactcagactggagtgcagaagcgagatcttggctcactacaacctctgcctcctgggtt-aagcgattctcctgcctcagcctcccaagtatctgggattacaggcacttgccaccatg---------------tatttttagtagagacagggtttcaccatgtcgcccaggctggtgtcaaactcctgacctcaggtgacccacccacttcggcctcccaaagtgctgggattataggcgtgagccgctatgcccggccatgagcccaaattctaa---------tgcattgttcaccactgtgtattcccatgtgtacatgcataaagcaattgttaacaagcttc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           196731 920 -    242197 aaaaagtgatctctcaagattctcgcacatctttcatcatgtctagagcaatactgcaaaccttaaataacaccatgggacccatatgaagtgccactagtgacgctggaaattctcccaagaagcagataaaagtcatgactctataa--a---aagttaaattgcttggtatacaccatagat----------ggtggtctgttgccggggttg-ctgccatttcagacagacaattcatcttgtaa----atgatgtaaacttaaggtatcaataaatacagtacagtaacctatacgtatt-----ttccttatgattttctagataacatttacttttctgtagcttactttattgcaagaatgt-atatataacatgtatagcatacaaaatacgtgttgatcaactgtt--tgttactggtaaggcattcagtcaacagtaagctattaatagctaagtttggggagaatcaaaaaagttatatacagattttcgtttgtgtgtgaggtcagcaaccctaagccccgagttgttctaggggcaactgTATAAGCTCCAAattg----------------------------------------------------------------------tttttattattattattattattgagatggagtctcc-tctgccactcagactggagtgcagaggcgagatcttggctcact---acctctgcctcttgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggcaccagtcaccatgcacagctaatttttatatttttagtagagatagggtttcaccatgttgcccaggctggtgtcaaactcctgacctcaggtgatccacccaattcagcctcccagagtgctgggattacaggtatgagccaccatgcccagccataagcccaaattctaa---------tgcattgttcacca--gtgtattcccatgtgtacatgcataaagcaattgttaataaacttc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     189412 928 -   1771730 aaaaattgatctctcaagattcttgcgtatctttcatcatgtctagagcaatactgcaaaccttaaataacatcatgggacccatatgaagtgccactagtgatgctggaaattctcccaagaagcagataaaagtcatggctctataaata---aagttaaattgcttgatacacaccatagat----------ggaggtctgttgctggggttg-ctgccatttcagacagacaattcatcttataa----atgatgtaaacttaaggtatcaataaatacaatacagtaacctatatgtatt-----ttccttacgattttcttgataacatttacttttctctagcttactttactgtaagaatgc-atatataacatgtatagcatacaaaacacgtgttgatcaactgtttatgctactgaataggctttcagtcaacagtaagctattaatagctaagtttggggagaatc--aaaagttatatacagatttttgtttgtgtgtgaggtcagcaacccttagccctgagttgttctaggggcaactgTATAAGCTCCAAATTG---------------------------------------------------------------------Gttttttttattattattattattgagatggagtctcc-tctgccactcagactggaatgcagaggcgagatcttggctcactacaacctctgcctcctgggttcaagcgattctcctgcctcagtctcacaagtagctgggattacaggcacctgccaccatgcacagctaatttttgtatttttagtagagacagggtttcaccatgttgcccaggctggtgtcaaactcctgacctcaggtgatccacccactttggcctcccaaagtgctgggattataggcatgagccgccatgcccggccatgagcccaaattctaa---------cgcattgttcaccactgtgtattcccatgtgtacatgcataaagcaattgttaataaacttc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     264407 920 -    457564 aaaaagtgatctctcaagattcttgcatatatttcatcacgtctagagcaatactgcaaaccttaaataacaccatgggacccatatgaagtgccactagtgacgctggaaattctcccaagcagcagataaaagtcatgactctgtaa--a---aagttgaattgcttgataaataccatagac----------ggaggtctgttgctggggttg-ctgccatttca----gacaattcatcttgtaa----atgatgtaaacttaaggtatcaataaatacagtacagtaacctatatgtatt-----ttccttacgattttcttgataacatttacttttctctagcttactgtattgtaagaatgc-atatataaaatgtatagcacacaaaatacgtgttgatcaactgtttatgttactggtaaggctttcagtcaacagtaagctattaatagctaagtttggggagaatc--aaaagttatgtacagattttcgtttgtgtgtgaggtcagcaaccctaagcgctgagttgttctaggggcaactgTATAAGCTCCAAATTG-----------------------------------------------------------------------ttttattattattattatttttgagatggagtctcc-tctgccactcagactggagtgcagaggcgagatctcggctcactacaacctctgcctccttggttcaagcgattctcctgcctcagcgttccaagtagctgggattacaggcacccgccaccatgcacagctactttttgtatttttagtagaggcaaggtttcaccatgttgcccaggttggtgtcaaactcctgacctcaggtgatccacccacttcggcctcccaaagtgctgggattataggcgtgagtcgccatgcccagccatgagcccaaattctaa---------tgcattgttcaccactgtgtattcccatgtgtacatgcataaagcaattgttaataaacttc
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            84431 886 +  18854210 aaaaaaagttcttttgtggtttttgcgtatttttcatcatgtttagtgcaatactataaaccctgaataacaccatgggactcatttaaaatgctactagtgatgttggaagtgctctcaagaagcagagaaaagtcatgacattacaa--gaataaattgacttatttgatatgtaccagagat----------tgaggtc-actactgcagatgcctgaca-ttcagaaagatgattcatctcataaacagataacataaacttgtggtatcaataaaaacaccacagtgctataaatgtattttctcttccatacaactttcttgata-----tatttttttctagcttactttactgcaagaatacaatatataata-------catataaaatatgtgtt----aattgtttatattattggtaaggctct-ggtcaatagcaggctattagtagttaagttttgggggagtc--aaaagttatatacatattttcaactgcagaaggggtcagcgcctctgaggcccaagttggtcaagcatcaactgTATT-GTcctaaattctcaccacccctttagggtacccatcaccagttactcccatgtgtgtgttcatgatgtacatgttaacaaacttcttttttttttttttttttggagacagatcctcaagctgtctccctgggtagagtgctgtggc---atcacaactcacaggaacctccaactcctgggcttaagcaattttcttgccttagcctcccaagtagctgggactacaggcgcctaccacaacacctggctattttttg--gttgtagttgtcattgttgcttgacag---gcccaggctggattcgaac-----------------ccaccagctctg---ttgtatgtggctgaca-------ccttagccacc-----------tgagc---------------------------------------------------tgcaggtgccaagc----------------c
i otoGar3.GL873550         I 1472 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26208770 493 +  26524999 I
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e macNem1.NW_012011356v1    2763988 2345 -   2996164 I
e macFas5.chr4             29718561 2339 - 170955103 I
e rheMac8.chr4             30055701 2369 + 172585720 I
e nomLeu3.chr1a            74576544 121 + 122973662 I

a score=598786.000000
s hg38.chr6_GL000254v2_alt   863769 147 +   4827813 tatttg-tttttctctcattaatctgtcttatgccactc-------------taatt-tacacagccacggctggagaacctaagacaggaagaggaaaaggattttctttcctacact------ccctacaCACACCTGGGGAA-TGCACTCTGCAGGCCACATGACG
s panTro5.chr6             29826464 147 + 175400573 tatttg-tttttctctcattaatctgtcttatgccactc-------------taatt-tacacagccgcagctggagaacctaagacaggaagaggaaaaggattttctttcctacact------ccctacaCACACCTGGGGAA-TGCACTCTGCAGGCCACATGACG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30061294 147 + 173848474 tatttg-tttttctctcattaatctgtcttatgccactc-------------taatt-tacacagccgcagctggagaacctaagacaggaagaggaaaaggattttctttcctacact------ccctacaCACACCTGGGGAA-TGCACTCTGCAGGCCACATGACG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5867575 148 +   6154872 tatttgttttttctctcattaatctgtcttatgccactc-------------taatt-tacacagccacagctggagaacctaagacaggaagaggaaaaggattttctttcctacact------ccctacaCACACCTGGGGAA-TGCACTCTGCAGGCCACATGACG
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            28976030 147 -  71996105 tatttg-tttttctctcattaatctgtcttatgccactc-------------taatt-tacacagccgcagctggagaacctaagacaggcagaggaaaaggattttatttcctacact------ccctacaCACACATGGGGAA-CGTACTCCGCAGGCCACATGATG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2610907 147 -   3067355 tatttg-tttttctctcattaatctgtcttatgccactc-------------taatt-tacacagccgcagctggagaacctaagacaggcagaggaaaaggattttatttcctacact------ccctacaCACACCTGGGGAA-TGTACTCCGCAGGCCACATGATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30049189 142 + 171630274 tatttg-tttatctctcattaatctgtcttatgccacac-------------taatt-gatacagccacagctg-----cctaagacaggcagaggaaaaagattttctttcctacact------ccctacaCACACCTGAGGAA-AGCACTCCACAGGCCACATAATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           197651 145 -    242197 tatttg-tt--tttctcgttaatccgtcttatgccattc-------------tgatt-tatacagccacagctggagaacctaagacaggcagaggaaaaggattttctttcctaccct------CCCTACACAGACCTGAGGAA-AGCACTCCACAAGCCACATAATG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     190340 147 -   1771730 tatttg-tttttctctcattaatctgtcttatgccactc-------------taatt-tatacagccacagctggagaacctaagacaggcagaggaaaaggattttctttcctacact------ccctacGCAGACCTGAGGAA-AGCACTCCACAGGCCACATAATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     265327 145 -    457564 tatttg-tttttctctcattaatctgtcttatgccactc-------------taatt-tatacagccacagctggagaacccgag--aggcagaggaaaaggattttctttcctacact------ccctacaTACACCTGAGGAA-AGCACTCCACAGGCCACATAATG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            85317 144 +  18854210 tatttg-ttttcttcttgctaatctgtc-tgttccagtc-------------tgatt-tacagggcctcgg-tggagaatgtaagataggctaaggaaaa-tattttcttcctcccttT------GCCCCTCCACACATGGAGAAGGGTGCACAGCATGATCTGTG-TA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26209263 153 +  26524999 tatgca-tctttctcttgtgaacctctcttctgcttgtcagtgagtcattagtgattctacatggtc-ctgctggagaacttgagatgggtagaggaaactgaccatctttcttctcctctacCCCTCTCCACCCACACGGAGGG-GGCACTCTGC-------------
i canFam3.chr35            I 493 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            14041 1272 +    102524 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e macNem1.NW_012011356v1    2763988 2345 -   2996164 I
e macFas5.chr4             29718561 2339 - 170955103 I
e rheMac8.chr4             30055701 2369 + 172585720 I
e nomLeu3.chr1a            74576544 121 + 122973662 I

a score=517276.000000
s hg38.chr6_GL000254v2_alt   863916 130 +   4827813 TTGCTTCTGCATCT----GTCTCCCTAGCTTTGCTGCAT--CAGTCCC----AGTGTCCAGCCCA--CACAGGCCTCAGTACGTGTCCCTATCACAGCTGCTGCTGGTGCT-GAACTCACCTTCCAGG--AGAGTCTCCAGCATA
s panTro5.chr6             29826611 130 + 175400573 TTGCTTCTGCATCT----GTCTCCCTAGCTTTGCTGCAT--CAGTCCC----AGTGTCCAGCCCA--CACAGGCCTCAGTACATGTCCCTATCACAGCTGCTGCTGGTGCT-GAACTCACCTTCCAGG--AGAGTCTCCAGCATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30061441 130 + 173848474 TTGCTTCTGCATCT----GTCTCCCTAGCTTTGCTGCAT--CAGTCCC----AGTGTCCAGCCCA--CACAGGCCTCAGTACATGTCCCTATCACAGCTGCTGCTGGTGCT-GAACTCACCTTCCAGG--AGAGTCTCCAGCATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5867723 130 +   6154872 TTGCTTCTGCATCT----GTCTCCCTAGCTTTGCTGCAT--CAGTCCC----AGTGTCCAGCCCA--CACAGGCCTCAGTACGTGTCCCTATCACAGCTGCTGCTGGTGCT-GAACTCACCTTCCAGG--AGAGTCTCCAGCATG
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            28976177 132 -  71996105 TTGCTTCTGCATCT----GTCTCCCTAGCTTTGTTGCATCACAATCCC----AGTGTCCAGCCCA--CACAGGCCTCAGTACATGTCCCTATCACAGCTGCTGCTGGTGCT-GAACTCACCTTCCAGG--ATAGTCTCTAGCATG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2611054 132 -   3067355 TTGCTTCTGCATCT----GTCTCCCTAGCTTTGTTGCATCACAGTCCC----AGTGTCCAGCCCA--CACAGGCCTCAGTACGTGTCCCTATCACAGCTACTGCTACTGCT-GAACTCACCTTCCAGG--ATAGTCTCTAGCATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30049331 127 + 171630274 TTGCTTCTGC--------GTCTCCCCAGCTTTACTGTATCACAGTCCC----AGTGTCCAGGTCA--CACAGGCCTCAGTACATGTCCCTACCACAGCTGTCGCTG-TGCT-GAACTCACCTTCCAGG--AGAGTCTGCAGCATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           197796 126 -    242197 TTGCTTCTGCATCT----GTCTCCCTAGCTTTACTGCAT--CAGTCCT----GGTGTCCAGCTCA--CACTGGCCTCAGTACATCTCCCTACCACAGCTGCTGCTG-TGCT-GAACTCACCTTCCAG----GAGTCTCCAG-ATG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     190487 131 -   1771730 TTGCTTCTGCATCT----GTCTCCCTAGCTTTACTGCATCACAGTCCC----GGTGTCCAGCTCA--CACAGGCCTCAGTACGTGTCCCTACCACAGCTACCGCTG-TGCT-GAACTCACCTTCCAGG--AGAGTCTCCAGCATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     265472 131 -    457564 TTGCTTCTCCATCT----GTCTCCCTAGCTTCACTGCATCACAGTCCC----AGTGTCCAGCTCA--CACAGGCCTCAGTACGTGTCCCTACCACAGCTGCCGCTG-TGGT-GAACTCACCTTCCAGG--AGAGTCTCCAGCATG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            85461 136 +  18854210 TTACTTCCCCACCTGCCAGTCTCCTTTGCTTTGCTACATCACAGCCCCCAGTAGTGCTGGGACCA--CATAGGCCTTCATACATAT-CATATCACGGCAGGTGCCA------GGATTCACCTGCCATGCAACAATCTCTAGCATG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26209416 106 +  26524999 ---CTGCTGCGGGG----G----------------------CTGTCAC----AGTGCCCAGTGCA--CA-AAGCCTCAGCAGGT---TCCACCCCAGCAGCCGCCGATGCCAGGGCTTACCTTTCCTGAGACAGCCTCTAGCGTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            15313 114 +    102524 TCACTTCTGAAAGT----GCCCCCCTC-TGCTGCTGCAT------CCC----AGCTCCCAGCCCAGTGACTGGCCCCCGCA--------------GGCTGCTGCTGGGGTGGGGGCTCATGGCCTGAC--ATCACCTCGAGCTCA
i dasNov3.JH582591         I 1272 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e macNem1.NW_012011356v1    2763988 2345 -   2996164 I
e macFas5.chr4             29718561 2339 - 170955103 I
e rheMac8.chr4             30055701 2369 + 172585720 I
e nomLeu3.chr1a            74576544 121 + 122973662 I

a score=325945.000000
s hg38.chr6_GL000254v2_alt   864046 55 +   4827813 TCCTTCCACACTCCAGGGAGCCATGTAAGTGGATGCCATACTG---GTTAAATATTTT
s panTro5.chr6             29826741 55 + 175400573 TCCTTCCACATTCCAGGGAGCCATGTAAGTGGATGCCATACTG---GTTAAGTATTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30061571 55 + 173848474 TCCTTCCACACTCCAGGGAGCCATGTAAGTGGATGCCATACTG---GTTAAGTATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5867853 55 +   6154872 TCCTTCCACACTCCAGGGAGCCATGTAAGTGGATGCCATACTG---GTTAAATATTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74576665 55 + 122973662 TCCTTCCACACTCCAGGGAGCCATGTAAGTGGATGCCATACTG---GTTAAGTATTTT
i nomLeu3.chr1a            I 121 C 0
s chlSab2.chr17            28976309 55 -  71996105 TCCTTCCATGCTCCAGGGAGCCATGTAAGTGGATGCCATATTG---GTTAAGTATTTT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2611186 55 -   3067355 TCCTTCCATGCTCCAGGGAGCCATGTAAGTGGATGCCATATTG---GTTAAGTATTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30049458 58 + 171630274 TCCTTCCACATTCCAGGGAGCTGTGTAAGTCGAtgccatattggttgttaagtatttt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           197922 56 -    242197 TCCTTCCACGTTCCAGGGAGCCGTATAAGTGGGTGTC--ATTATTGGTTAAGTATTTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     190618 58 -   1771730 TCCTTCCACGTTCCAGGGAGCCATGTAAGTGGATGCCATATTGATTGTTAAGTATTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     265603 58 -    457564 TCCTTCCACGTTCCAGGGAGCCGTGTAAGTGGATGCCATATTGGTTGTTAAGTATTTT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            85597 55 +  18854210 TTCTTCCAACCTGCTGTCGGCTATGTAAGTGGATGCCATGTTG---GTTAAGTATTTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26209522 55 +  26524999 TCCTTCCTGGGCCCAGGGTACCATATAAGGGGATGACATATTG---GCAAAGTGATTT
i canFam3.chr35            C 0 I 72
s dasNov3.JH582591            15427 50 +    102524 ----TCTCTGCT-CAGGGGACCAGGTAAGTGGGTGCCATATTG---GGTAAGAATTCT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e macNem1.NW_012011356v1    2763988 2345 -   2996164 I
e macFas5.chr4             29718561 2339 - 170955103 I
e rheMac8.chr4             30055701 2369 + 172585720 I

a score=486275.000000
s hg38.chr6_GL000254v2_alt   864101 111 +   4827813 GAGTAGCATCCCATTTGAGGGAAGC-TGTCACTTAACATGAA-CCCACCAT--AAGGTGGCTAATGAATAGCACCTTTCTGCCTGCCTTCAAGTGACAGCCTCCCTTAACATGAA
s panTro5.chr6             29826796 111 + 175400573 GAGTAGCATCCCATTTGAGGGAAGC-TGTCACTTAACATGAA-CCCACCAT--AAGGTGGCTAATGAATAGCACCTTTCTGCCTGCCTTCAAGTGACAGCCTCCCTTAACATGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30061626 111 + 173848474 GAGTAGCATCCCATTTGAGGGAAGC-TGTCACTTAACATGAA-CCCACCAT--AAGGTGGCTAATGAATAGCACCTTTCTGCCTGCCTTCAAGTGACAGCCTCCCTTAACATGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5867908 111 +   6154872 GAGTAGCATCCCATTTGAGGGAAGC-TGTCACTTAATATGAA-CCCACCAT--AAGGTGGCTAATGAATAGCACCTTTCTGCCTGCCTTCAAGTGACAGCCTCCCTTAACATGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74576720 110 + 122973662 AAGTAGCATCCCATTTGAGGGAAGC-TGTCACTTGACATGAA-CCCACCAT--AAGGTGGCTAATGAATAGCACCTTTCCGCCTGCCTTCAAGTGACAGCCTCCCTTAACAT-AA
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            28976364 111 -  71996105 GAGTAGCATCCCATTTGAGGGAAGC-TGTCACTTAACATGAA-ACCACCAT--AAGGTGGCTAATCAATAGCACCTTTCCGCCTGCCTTCAAGTGACAGCCTCCCTTAACATGAA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2611241 111 -   3067355 GAGTAGCATCCCATTTGAGGGAAGC-TGTCACTTAACATGAA-ACCACCAT--GAGGTGGCTAATCAATAGCACCTTTCCGCCTGCCTTCAAGTGACAGCCTCCCTTAACATGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30049516 107 + 171630274 gagtagcatcccATTTGAAAGAAGC-TGTCACTTGACATGAA-ACCACCAT--AAGGTGGCT----AATAGCACCTTTCCATGTGCCTTCAAGTGACAGCCTCCCTTAACATGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           197978 109 -    242197 GAGTAACATCCCATTTGAAGGAAGC-TGTCACTTGTCATGAA-ACCACCATAAAAAGTGGCT----AATAGCACCTTTCCACCTGCCTTCAAGTGACAGCCTCCCTTAACATGAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     190676 107 -   1771730 GAGTAGCATACCATTTGAAGGAAGC-TGTCACTTGTCATGAA-ACCACCAT--AAGGTGGCT----AAAAGCACCTTTCCACCTGCCTTCAAGTGACAGCCTCCCTTAACATGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     265661 107 -    457564 GAGTAGTATCCCATTTGAAGGAAGC-TGTCACTTAACATGAA-ACCACCAT--AAGGTGGCT----AATAGCACCTTTCCACATGCCTTCAAGTGACAGCATCCCTTAACATAAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            85652  56 +  18854210 GAATATCACCTCACTTAATGGGAGCATGACACCTGACATGAAGCCCACCTG--AAGAT---------------------------------------------------------
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            15477  67 +    102524 ---GAACATCACTGCCATGGAGAGC-TAGCACCTGATGTGAAGCCCATCCT--------------------------------------------CCACCCCTCCTTAGGATAAA
i dasNov3.JH582591         C 0 I 2
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26209577  72 +  26524999 I
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e macNem1.NW_012011356v1    2763988 2345 -   2996164 I
e macFas5.chr4             29718561 2339 - 170955103 I
e rheMac8.chr4             30055701 2369 + 172585720 I

a score=53072.000000
s hg38.chr6_GL000254v2_alt   864212 15 +   4827813 GCCTACCTTTTGGTA
s panTro5.chr6             29826907 15 + 175400573 GCCTACCTTTTGGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30061737 15 + 173848474 GCCTACCTTTTGGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5868019 15 +   6154872 GCCTACCTTTTGGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74576830 15 + 122973662 ACCTACCTTATGGTA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29720900 15 - 170955103 gcctaccttaCGGTA
i macFas5.chr4             I 2339 C 0
s chlSab2.chr17            28976475 15 -  71996105 GCCTACCTTACGGTA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2611352 15 -   3067355 GCCTACCTTATGGTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30049623 14 + 171630274 GCCTACCTTATGGT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           198087 14 -    242197 GCCTACCTTATGGT-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     190783 14 -   1771730 GCCTACCTTATGGT-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     265768 14 -    457564 GCCTACCCTATGGT-
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            85708  7 +  18854210 ---TTCTCTA-----
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            15546  5 +    102524 GACTA----------
i dasNov3.JH582591         I 2 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26209577 72 +  26524999 I
e manLeu1.NW_012099233v1     149771 3181 +    290775 I
e cerAty1.NW_012002711v1     516337 3621 +    766320 I
e macNem1.NW_012011356v1    2763988 2345 -   2996164 I
e rheMac8.chr4             30055701 2369 + 172585720 I

a score=179776.000000
s hg38.chr6_GL000254v2_alt   864227 23 +   4827813 AGCTTCATGTCAAGTGAT-------------AGCTT
s panTro5.chr6             29826922 23 + 175400573 AGCTTCATGTCAAGTGAT-------------AGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30061752 23 + 173848474 AGCTTCATGTCAAGTGAT-------------AGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5868034 23 +   6154872 AGCTTCACGTCAAGTGAT-------------AGCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74576845 23 + 122973662 AGCTTCATGTCAAGTGAT-------------AGCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30058070 23 + 172585720 AGCTTCATGTCAAGTGAT-------------AGATT
i rheMac8.chr4             I 2369 C 0
s macFas5.chr4             29720915 22 - 170955103 -GCTTCATGTCAAGTGAT-------------AGATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2766333 23 -   2996164 AGCTTCATGTCAAGTGAT-------------AGATT
i macNem1.NW_012011356v1   I 2345 C 0
s cerAty1.NW_012002711v1     519958 23 +    766320 AGCTTCATGTCAAGTGAT-------------AGATT
i cerAty1.NW_012002711v1   I 3621 C 0
s chlSab2.chr17            28976490 22 -  71996105 -GCTTCATGTCAAGTGAT-------------AGATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     152952 23 +    290775 AGCTTCATGTCAAGTGAT-------------AGATT
i manLeu1.NW_012099233v1   I 3181 C 0
s colAng1.NW_012115566v1    2611367 22 -   3067355 -GCTTCATGTCAAGTGAT-------------AGACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30049637 36 + 171630274 AGCTTCATACCAAGTGATAGGGCAAGATCACAGAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           198101 36 -    242197 AGCTTCATGTCAAGTGATAGGGCAAGACCACAGAAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     190797 36 -   1771730 AGCTTCATGTCAAGTGATAGGGCAAGACCACAGAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     265782 36 -    457564 AGCTTCATGTCAAGTGAAAGGGCAAGATCACAGAAT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            85715 12 +  18854210 ------AGGTTAATGGAC------------------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            15551  0 +    102524 C
e proCoq1.NW_012152574v1     572797 2967 +    730504 I
e canFam3.chr35            26209577 72 +  26524999 I

a score=157106.000000
s hg38.chr6_GL000254v2_alt   864250 17 +   4827813 CCCTCAAGGGCAAAGTC
s panTro5.chr6             29826945 17 + 175400573 CCCTCAAGGGCAAAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30061775 17 + 173848474 CCCTCAAGGGCAAAGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5868057 17 +   6154872 CCCTCAAGGGCAAAGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74576868 17 + 122973662 CCCTCAAGGGCAAAGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30058093 17 + 172585720 CCCTCAAGGGCAAAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29720937 17 - 170955103 CCCTCAAGGGCAAAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2766356 17 -   2996164 CCCTCAAGGGCAAAGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     519981 17 +    766320 CCCTCAAGGGCAAAGTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28976512 17 -  71996105 CCCTCAAGGGCAAAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     152975 17 +    290775 CCCTCAAGGGCAGAGTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2611389 17 -   3067355 CCCTCAAGGGCAAAGTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30049673 16 + 171630274 TCCTCAAGGGCAAGAT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           198137 16 -    242197 TCCGCAAGGGCAAGAT-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     190833 16 -   1771730 TCCTCAAGGGCAAGAT-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     265818 16 -    457564 TCCTCAAGGGCAAGAT-
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            85727 16 +  18854210 -CATGAAGGGCAACATA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26209649 17 +  26524999 CCATGGAATGCAAAGGA
i canFam3.chr35            I 72 C 0
s dasNov3.JH582591            15551 14 +    102524 ---TGACGTGCCAAGTA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e proCoq1.NW_012152574v1     572797 2967 +    730504 I

a score=1154976.000000
s hg38.chr6_GL000254v2_alt   864267 88 +   4827813 ACAGAATTATCTGTTTCAAAAGCCTGAGTGGATAAACAAACTGTTGCCTATCCAGGGTGTCCTAAAACTACCAAGGACTGTGGGAGGA
s panTro5.chr6             29826962 88 + 175400573 ACAGAATTATCTGTTTCAAAAGCCTGAGTGGATAAACAAACTGTTGCCTATCCAGGGTGTCCTAAAACTACCAAGGACTGTGGGAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30061792 88 + 173848474 ACAGAATTATCTGTTTCAAAAGCCTGAGTGGATAAACAAACTGTTGCCTATCCAGGGTGTCCTAAAACTACCAAGGACTGTGGGAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5868074 86 +   6154872 ACAGAATTA-CTGTTTCAAAAGCC-GAGTGGATAAACAAACTGTTGCCTATCCAGGGTGTCCTAAAACTACCAAGGACTGTGGGAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74576885 87 + 122973662 ACAGAATTATCTGCTTCAAAAGCCTGAGTGGAT-AACAAAATGTTGCCTATCCAGGATGTCCTAAAACTACCAAGGACTATGGGAGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30058110 88 + 172585720 ACAGAATTACCTGCTTCAAAAGCCTGAGTGGATAAACAAAATGTTGCCTATCCAGGGTATCCTAAAGTTACCAAGGACTGTGGGAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29720954 88 - 170955103 ACAGAATTACCTGCTTCAAAAGCCTGAGTGGATAAACAAAATGTTGCCTATCCAGGGTATCCTAAAGTTACCAAGGACTGTGGGAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2766373 88 -   2996164 ACAGAATTACCTGCTTCAAAAGCCTGAGTGGATAAACAAAATGTTGCCTATCCAGGGTATCCTAAAGTTACCAAGGACTGTGGGAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     519998 88 +    766320 ACAGAATTACCTGCTTCAAAAGCCTGAGTGGATAAACAAAATGTTGCCTATCCAGGGTATCCTAAAGTTACCAAGGACTGTGGGAGAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28976529 88 -  71996105 ACAGAATTATCTGCTTCAAAAGCCTGAGTGAATAAACAAAATGTTGCCTATCCAGGGTATCCTAAAGTTACCAAGGACTGTGGGAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     152992 88 +    290775 ACAGAATTACCTGCTTCAAAAGCCTGAGTGGATAAACAAAATGTTGCCTATCCAGGGTATCCTAAAGTTACCAAGGACTGTGGGAGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2611406 88 -   3067355 ACAGAATTATCTGCTTCAAAAGCCTGAGTGGATAAACAAAATGTTGCCTATCCAGGGTATCCTAAAATTACCAAGGACTGTGGGAGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30049689 87 + 171630274 -CAGATTTCTCTGCTTCAAAACCCTGAGTGGATAAACAAAATGTTGCCTATCCAGGGCATCCTAAAATTATCAAGGACTACGGGAGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           198153 87 -    242197 -CAGATTTCTCTGCTTCAAAACCCTGAGTGGATAAGCAAAATGTTGCCTATCCAGGGCATCCTAAAATTACCGAGGACTATGGGAGGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     190849 87 -   1771730 -CAGATTTCTCTGCTTCAAAACCCTGAGTGTACAAACAAAATGTTGCCTATCCAGGGCATCCTAAAATTACCGAGGACTATGGGAGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     265834 87 -    457564 -CAGATTTCTCTGCTTCAAAACCCTGAGTGGATAAACAAAATGTTGCCTATCCAGGGCATCCTAAAATTACTGAGGACTATGGGAGGA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     575764 88 +    730504 ACAGAATTCCCTGCTTCAAAAGCCTGAGTGAATAAGCAAAAAGTTGCCTGTGCAGGGTGGCCTAAAATGACACAGGACTGTGGGAGGA
i proCoq1.NW_012152574v1   I 2967 C 0
s otoGar3.GL873550            85743 73 +  18854210 ACAGAATTCCCTGCTTCAAAAGACTGAGTAAATAACAAAAAA---------------TAGCCTAAAATTACAAAGGATTGTGGGAGGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26209666 88 +  26524999 ACAAAATTCCCTGGTCCAAAAGCCTGAGTGAATAAACCAAAAGACATTAGTCCAGAGTGGCCTGAAATGACAAAGGACCGTGGGAATG
i canFam3.chr35            C 0 I 44
s dasNov3.JH582591            15565 87 +    102524 ACAGAATTCCCTGCTCCCAAAGCCGGAGTGAATAAACAAAAAGGTATCTGTCCACAGGGGCTTAAAATT-CAAAGGACTGCGGGAGGC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I

a score=400713.000000
s hg38.chr6_GL000254v2_alt   864355 29 +   4827813 ---G---CAATTGGCAGGACCATCTTCAACACTTC
s panTro5.chr6             29827050 29 + 175400573 ---G---CAATTGGCAGGACCATCTTCAACACTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30061880 29 + 173848474 ---G---CAATTGGCAGGACCATCTTCAACACTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5868160 29 +   6154872 ---G---CAATTGGCAGGACCATCTTCAACACTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74576972 29 + 122973662 ---G---CAATTGGCAGGACCATCTTCAACACTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30058198 29 + 172585720 ---G---CAATTGGCAGGACCATCTTCAACACTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29721042 29 - 170955103 ---G---CAATTGGCAGGACCATCTTCAACACTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2766461 29 -   2996164 ---G---CAATTGGCAGGACCATCTTCAACACTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     520086 29 +    766320 ---G---CAATTGGCAGGACCATCGTCAACACTTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28976617 29 -  71996105 ---G---CAATTGGCAGGACCATCTTCAACACTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     153080 29 +    290775 ---G---CAATTGGCAGGACCATCGTCAACACTTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2611494 29 -   3067355 ---G---CAATTGGCAGGACCATCTTCAACACTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30049776 29 + 171630274 ---G---CAATTGGCAGGACCATTTTCAACACTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           198240 29 -    242197 ---G---CAATTGGCAGGACCATTTTCAACACTTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     190936 29 -   1771730 ---G---CAATTGGCAGGACCATTTTCAACACTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     265921 29 -    457564 ---G---CAATTGGCAGGACCATTTTCAACACTTC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     575852 32 +    730504 ---GCCACAATTGGCAGGACCATCTTCAACGCTTC
i proCoq1.NW_012152574v1   C 0 I 833
s otoGar3.GL873550            85816 32 +  18854210 ---ACCACAAGTGGCAAAACTATCTTCAACACATC
i otoGar3.GL873550         C 0 I 2
s dasNov3.JH582591            15652 32 +    102524 GCCA---CAATTGGTGGGGTCACCTTCAACACTCC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e canFam3.chr35            26209754 44 +  26524999 I

a score=274212.000000
s hg38.chr6_GL000254v2_alt   864384 26 +   4827813 CCATTTTCTGCT-------GGGGTGAGATCACA
s panTro5.chr6             29827079 26 + 175400573 CCATTTTCTGCT-------GGGGTGAGATCACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30061909 26 + 173848474 CCATTTTCTGCT-------GGGGTGAGATCACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5868189 26 +   6154872 CCATTTCCTGCT-------GGGGTGAGATCACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74577001 26 + 122973662 CCATTTTCTACT-------GGGGTGAGATCACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30058227 26 + 172585720 CCATTTTCTGCT-------GGGGTGAGATCACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29721071 26 - 170955103 CCATTTTCTGCT-------GGGGTGAGATCACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2766490 26 -   2996164 CCATTTTCTGCT-------GGGGTGAGATCACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     520115 26 +    766320 CCATTTTCTGCT-------GGGGTGAGATCACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28976646 26 -  71996105 CCATTTTCTGCT-------GGGGTGAGATCACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     153109 26 +    290775 CCATTTTCTGCT-------GGGGTAAGATCACA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2611523 26 -   3067355 CCATTTTCTGCT-------GGGGTGAGATCACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30049805 26 + 171630274 CCATTTGCTGCT-------GGGGTGAAATCACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           198269 26 -    242197 CCATTTGCTGCT-------AGGGTGAGATCACA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     190965 26 -   1771730 CCATTTGCTGCT-------GGGGTGAGATCACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     265950 26 -    457564 CCATTTGCTGCT-------GGGGTGAGATCACA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            85850 27 +  18854210 GCAGATAAGGTTA------AGGGTGAGACTACA
i otoGar3.GL873550         I 2 C 0
s dasNov3.JH582591            15684 21 +    102524 ------------AGACAGACGTGTGGAAACACA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e proCoq1.NW_012152574v1     575884 833 +    730504 I
e canFam3.chr35            26209754 44 +  26524999 I

a score=977942.000000
s hg38.chr6_GL000254v2_alt   864410  99 +   4827813 GCTGGCCCCCAAGCATCCAG---------AGGAATCCAGGGCCTGG-TAAGAGGCTGTATGACAGCAAA---TATACAAGGCTAGGGTGCTCAGCTC-AGAGGGCGGACAAAG
s panTro5.chr6             29827105  71 + 175400573 GCTGGCCCCCAAGCATCCAG---------AGGAATCCAGGGCCTGG-TAAG---------------------------AGGCTAGGGTGCTCAGCTC-AGAGGG----CAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30061935  71 + 173848474 GCTGGCCCCCAAGCATCCAG---------AGGAATCCAGGGCCTGG-TAAG---------------------------AGGCTAGGGTGCTCAGCTC-AGAGGG----CAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5868215  99 +   6154872 GCTGGCCCCCAAGCATCCAG---------AGGAATCCAGGGCCTGG-TAAGAGGCTGTATGACAGCAAA---TATACAAGGCTAGGGTGCTCAGCTC-AGAGGGCGGACAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74577027  99 + 122973662 GCTGGCCCCAAAGCATCCAA---------AGGAATCCAGGGCCTGC-TAAGAGGCTGTATGACAGCAAA---TATACAAGGCTAGGGTGCTCAGCTC-AGAGGGCGGACAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30058253  99 + 172585720 GCTGGCCCCAAAGCATCCAG---------AGGAATCTAGGGCCTAG-TAAGAGGCTGCATGACAGCAAA---TCTACAAGGCTAGGGTGTTCAGCTC-AGAGGGcagacaaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29721097  99 - 170955103 GCTGGCCCCAAAGCATCCAG---------AGGAATCTAGGGCCTAG-TAAGAGGCTGCATGACAGCAAA---TCTACAAGGCTAGGGTGTTCAGCTC-AGAGGGCGGACAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2766516  99 -   2996164 GCTGGCCCCAAAGCATCCAG---------AGGAATCTAGGGCCTAG-TAAGAGGCTGCATGACAGCAAA---TCTACAAGGATAGGGTGTTCAGCTC-AGAGGGCGGACAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     520141  99 +    766320 GCTGGCCCCAAAGCATCCAG---------AGGAATCTAGGGCCTAG-TAAGAGGCTGCATGACAGCAAA---TATACAAGGATAGGGTGTTCAGCTC-AGAGGGCGGACAAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28976672  99 -  71996105 GCTGGCCCCAAAGCATCCAG---------AGGAATGTACAGCCTAG-TAAGAGGCTGCATGACAGCAAA---TATACAAGGCTAGGGTGTTCAGCTC-AGAGGGCGGACAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     153135  99 +    290775 GCTGGCCCCAAAGCATCCAG---------AGGAATCTAGGGCCTAG-TAAGAGGCTGCATGACAGCAAA---TATACAAGGATAGGGTGTTCAGCTC-AGAGGGCGGACAAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2611549  99 -   3067355 GCTGGCTCCAAAGCGTCCAG---------AGGAATCTAGGGCCTGG-TAAGAGGCTGCATGACAGCAAA---TATACAAGGCTAGGGTGTTCAGCTC-AGAGGGCGGACAAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30049831 100 + 171630274 GCAGGTCCCAAAGCATCCAG---------AGGAATCCAGGGCCTGGTTAAGAGTCTGCATGACAGCAAA---TATTCAAGACTAGGGTGCTCAGCTC-AGAGGACGGAACAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           198295 100 -    242197 GCTGGCTCCAAAGCATCCAG---------AGGAATCCAGGGCCTAGTTAAGAGGCTGCATGACAGCAAA---TATACAAGACTAGGGTGCTCAGCTC-AGAGGGAGGAACAAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     190991 100 -   1771730 GCTGGCCCCAAAGCATCCAG---------AGGAATCCAGGGCCTGGTTAAGAGACTGCATGACAGCAAA---TATACAAGACTAGGGTGCTCAGCTC-AGAGGGAGGAACAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     265976 100 -    457564 GCTGGCCCCAAAGCATCCAG---------AGGAATCCAGGGCCTGGTTAAGAGGCTGCATGACAGCAAA---TATACAAGACTAGGGTGCTCAGCTC-AGAGGGCGGAACAAG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            85877 101 +  18854210 GCTGACCATGAAGCACCCAG--------AAGGAATCAAGGGTTTGG-TTAGAGGCCAAATGACACCAAG---CAGACAAGACCAGGGTGATCAACTCAAGAGGGTCAACATGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26209798  94 +  26524999 GCCAGCCCTGAAGTGTCCAG---------GAGTA---GAGGCCTAA-TAAGAGTCTGAACG-CAGCAAT---GAGGCAAGACT-GGGTGGTCAGCTT-TGGGTGTAGACAAGC
i canFam3.chr35            I 44 C 0
s dasNov3.JH582591            15705 101 +    102524 GATGGCCCTACAGCATCCAACGCATAAGAAGACACTGAAGTCCTGC-TGAGA---------AAAGCCAATGGTAGGCAGGACT-GGGCAATCAGTGT-GGGTGGTGGACAAGG
i dasNov3.JH582591         C 0 I 899
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e proCoq1.NW_012152574v1     575884 833 +    730504 I

a score=542186.000000
s hg38.chr6_GL000254v2_alt   864509 47 +   4827813 AACATGTTAAAGTGAAGTGAACACTGGCTTTGCAGCAGGCAGACCAG
s panTro5.chr6             29827176 47 + 175400573 AACATGTTAAGGTGAAGTGAACACTGGCTTTGCAGCAGGCAGACCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30062006 47 + 173848474 AACATGTTAAGGTGAAGTGAACACTGGCTTTGCAGCAGGCAGACCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5868314 47 +   6154872 aacatgttaaagtgaagtgaacactggctttgcagcaggcagaccAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74577126 47 + 122973662 aacgtggtaaggtgaagtgaacactggctttgcagcaggcagaccAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30058352 47 + 172585720 aacgtggtaagatgaagtgaacactggctttgtagcaggcagaccAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29721196 47 - 170955103 AACGTGGTAAGATGAAGTGAACACTGGCTTTGTAGCAGGCAGACCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2766615 47 -   2996164 AACGTGGTAAGATGAAGTGAACACTGGCTTTGTAGCAGGCAGACCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     520240 47 +    766320 aacgtggtaagatgaagtgaacactggctttgcagcaggcagaccag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28976771 47 -  71996105 AACGTGGTAAGATGAAGTGAACACTGGCTTTGTAGCAGGCAGACCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     153234 47 +    290775 AACGTGGTAAGATGAAGTGAACACTGGCTTTGCAGCAGGCAGACcag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2611648 47 -   3067355 AACTTGGTAAGATGAAATGAACACTGGCTTTGTAGCAGGCAGACCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30049931 47 + 171630274 AACATGGTAAGGTAAAGTGAACACTGGCTTTGCAGCAGGCAGACCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           198395 42 -    242197 AACGT-----GGTAAAGTGAACACTGGCTTTGCAGCAGAAAGACCAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     191091 47 -   1771730 AACGTGGTAAGGTAAAGTGAACACTGGCTTTGCAGCAGGAAGACCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     266076 47 -    457564 aacgtggtaaggtaaagtgaacactggctttgaagcaggcagaccAG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            85978 47 +  18854210 AGTGTGGCAAGGTGGAGTGAACACAGGTTGTGCAATAGGCAGACCAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26209892 46 +  26524999 GGTATGGAGAGCGGGAATAAAC-CTGGCTTTGGAGAAGGCAGACCAG
i canFam3.chr35            C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            15806 899 +    102524 I
e proCoq1.NW_012152574v1     575884 833 +    730504 I

a score=5415911.000000
s hg38.chr6_GL000254v2_alt   864556 534 +   4827813 Atgcagcagactgcttttaccaaagcagcctgcaac-a-cacatttgtcccattccacatgttctcttt-acagtgtgacttacgctcatcccaccaacaggtgaa-g----tgtttcctctcctgaacctaggca------tggccttgtgactgcttggaccagtggaatatctcagaagtgatgctacgtgactttcaaggctttgtcag--gg------------------------a---------aaaaaaaaatacagcttaaacctggctg--actctctacaactgc----------------------------------------ctc--------cacttgcctttggaact--gtcattaggtcatgaggaataccaggccacatggaaaggtcatgtgtaggggtctcagctg-----------------------------acagccaatacct-cctttagatg--ctgagtgaaggatcttttggacaacaa---ccctcagacttcagatcttccagatgctgtggagcag-ggtgaaccctccccactgtaccctatctgaatttctagcccacaaaaaccatgatggataataaatgattattgttgtctgaagcca---tttagggtaacaggttttgtggcaatagataaTA
s panTro5.chr6             29827223 535 + 175400573 Atgcagcagactgcttttaccaaagcagcctgcaac-a-cacatttgtcccattccacatgttctcttt-acagtgtgacttacgctcatcccaccaacaggtgaa-g----tgtttcctctcctgaacctaggca------tggccttgtgactgcttggaccagtggaatatctcagaagtgatgctacatgactttcaaggctttgtcag--gga----a------------------a---------aaaaaaaaatacagcttaaacctggctg--actctctacaactgc----------------------------------------ctc--------cacttgcctttggaact--gacattaggtcatgaggaataccaggccacatggaaaggtcatgtgtaggggtctcagctg-----------------------------acagccaacacct-cctttagatg--ctgagtgaaggaccttttggacaacaa---ccctcagacttcagatcttccagatgctgtggagcag-agtgaaccct-cccactgtaccctatctgaatttctagcccacaaaaaccatgatagataataaatgattattgttgtctgaagcca---tttagggtaacaggttttgtggcaatagataaTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30062053 534 + 173848474 Atgcagcagactgcttttaccaaagcagcctgcaac-a-cacatttgtcccattccacatgttctcttt-acagtgtgacttacgctcatcccaccaacaggtgaa-g----tgtttcctctcctgaacctaggca------tggccttgtgactgcttggaccagtggaatatctcagaagtgatgctacatgactttcaaggctttgtcag--gg-----a------------------a---------aaaaaaaaatacagcttaaacctggctg--actctctacaactgc----------------------------------------ctc--------cacttgcctttggaact--gacattaggtcatgaggaataccaggccacatggaaaggtcatgtgtaggggtctcagctg-----------------------------acagccaacacct-cctttagatg--ctgagtgaaggaccttttggacaacaa---ccctcagacttcagatcttccagatgctgtggagcag-agtgaaccct-cccactgtaccctatctgaatttctagcccacaaaaaccatgatagataataaatgattattgttgtctgaagcca---tttagggtaacaggttttgtggcaatagataaTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5868361 536 +   6154872 Atgcagcagactgcttttaccaaagcagcctgcaac-a-cacatttgtcccattccacatgttctcttt-acagtgtgacttacgctcatcccaccaacaggtgaa-g----tgtttcctctcctgaacctaggca------tggccttgtgactgcttggaccagtggaatatctcagaagtgatgctacgtgactttcaaggctttgtcag--ggaa--ca------------------a---------aaaaaaaaatacagcttaaacctggctg--actctctacaactgc----------------------------------------ctc--------cacttg-ctttggaact--gtcattaggtcataaggaataccaggccacatggaaaggtcatgtgtaggggtctcagctg-----------------------------acagccaacacct-cctttagatg--ctgagtgaaggaccttttggacaacaa---ccctcagacttcagatcttccagatgctgt-gagcag-ggtgaaccctccccactgtaccctatctgaatttctagcccacaaaaaccatgagggataataaatgattattgttgtctgaagcca---tttagggtaacaggttttgtggcaatagataaTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74577173 537 + 122973662 Atgcagcagactgcttttacccaagaagcctgcaac-a-cacatttgtcccattccacatgttctcttt-acagtgtgacttatgctcatcccaccaacaggtgaa-g----tgtttcctctcctgaacctaggca------tggccttgtgactgcttggaccagtggaatatctcaaaagtgatgctacgtgactttcaaggctttgtcag--gaaa---a------------------a---------aaaaaaaaatacagcttaaacctggctg--gctctctacaactgc----------------------------------------ctc--------cacttgcctttggaact--gtcattaggtcatgaggaataccaggccacatggaaaggtcatgtgtaggggtctcagctg-----------------------------acagccaacaccc-cctttagacg--ctgagtgaaggatcttttggacaacaa---ctctcaaatttcacatcttccagatgctgtggagcag-ggtgaaccctccccactgtaccctctctgaatttctagcccacaaaaaccatgatagataataaatgattattcttatctgaagcca---tttagggtaacaggttttgtggcaatagataaTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30058399 561 + 172585720 Atgcagcagattgcttttaccaaagaagcctgcaac-a-cacatttgtccaattccacatgttctcttt-acagtgtgacttacgctcatcccactaagaggtgaa-g----tgtttcctctcctgaacctaggca------tggccttgcgactgcctggaccagtggaatatctcagaagtgatgctatgtgactttcaaggctttgtgag--gaaaaata------------------a---------ataaataaatacagcttaaacctggctg--gctctctacaactgc----------------------------------------ctc--------catttgcctttggaact--gtcattaggtcatgaggaatacgaggccacatggaaaggccatgtgtaggggtttcagctgacagccct----cgctgaggtctctgccaacagccaacaccc-ccattagacg--ctgagtgaaggaccctttggacaacaacagcccccagatttctgaccttccagatgctatggagcag-ggtgaaccctccccaccgtaccctatctgaatttctagcccacaaaaaccat----gataataaatgattattgttgtctgaagcca---tttagggtaacaggttttgtggcaatag---ata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29721243 561 - 170955103 Atgcagcagattgcttttaccaaagaagcctgcaac-a-cacatttgtccaattccacatgttctcttt-acagtgtgacttacgctcatcccactaagaggtgaa-g----tgtttcctctcctgaacctaggca------tggccttgcgactgcctggaccagtggaatatctcagaagtgatgctatgtgactttcaaggctttgtgag--gaaaaata------------------a---------ataaataaatacagcttaaacctggctg--gctctctacaactgc----------------------------------------ctc--------cacttgcctttggaact--gtcattaggtcatgaggaatacgaggccacatggaaaggccatgtgtaggggtttcagctgacagccct----cgctgaggtctctgccaacagccaacaccc-ccattagacg--ctgagtgaaggaccctttggacaacaacagcccccagatttctgaccttccagatgctatggagcag-ggtgaaccctccccaccgtaccctatctgaatttctagcccacaaaaaccat----gataataaatgattattgttgtctgaagcca---tttagggtaacaggttttgtggcaatag---ata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2766662 561 -   2996164 Atgcagcagattgcttttaccaaagaagcctgcaac-a-cacatttgtccaattctacatgttctcttt-acagtgtgacttacgctcatcccactaagaggtgaa-g----tgtttcctctcctgaacctaggca------tggccttgcgactgcctggaccagtggaatatctcagaagtgatgctatgtgactttcaaggctttgtgag--gaaaaata------------------a---------ataaataaatacagcttaaacctggctg--gctctctacaactgc----------------------------------------ctc--------tacttgcctttggaact--gtcattaggtcatgaggaataccaggccacatggaaaggccatgtgtaggggtttcagctgacagccct----cgctgaggtctctgccaacagccaacaccc-ccattagacg--ctgagtgaaggaccctttggacaacaacagcccccagatttctgaccttccagatgctatggagcag-ggtgaaccctccccaccataccctatctgaatttctagcccacaaaaaccat----gataataaatgattattgttgtctgaagcca---tttagggtaacaggttttgtggcaatag---ata
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     520287 551 +    766320 a----------tgcttttaccaaagaagcctgcaac-a-cacatttgtccaattccacatgttctcttt-acagtgtgacttacgctcatcccactaagaggtgaa-g----tgtttcctctcctgaacctaggca------tggccttgcgactgcttggaccagtggaatatctcagaagtgatgctatgtgactttcaaggctttgtgag--gaaaaata------------------a---------ataaataaatacagcttaaacctggctg--gctctctacaactgc----------------------------------------ctc--------cacttgcctttggaact--gtcattaggtcatgaggaataccaggccacatggaaaggccatgtgtaggggtttcagctgacagccct----cgctgaggtctctgccaacagccaacaccc-ccattagacg--ctgagtgaaggatcttttggacaacaacagcccccagatttctgaccttccagatgctatggagcag-ggtgaaccctccccaccgtaccctatctgaatttctagcccacaaaaaccat----gataataaatgattattgttgtctgaagcca---tttagggtaacaggttttgtggcaatag---ata
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28976818 567 -  71996105 Atgtagcagattgcttttaccaaagaagcctgcaac-a-cacattcgtcccattccacatgttctcttt-acagtgtgacttacactcatcccaccaagaggtgaa-g----tatttcctcttctgaacctaggcatggccttggccttgtgactgcttggacgagtggaatatctcagaagtgatgctacgtgactttcaaggctttgtcag--gaaaaata------------------a---------atgaataaatacagcttaaacctggctg--gctctctacaactgc----------------------------------------ctc--------cacttgccttgggaact--gtcattaggtcatgaggaataccaggccacgtggaaaggccatgtgtaggggtttcagctgacagccct----cgctgaggtctctgccaacagccaacaccc-ccatcagacg--ctgagtgaaggaccctttggacgacaacagcccccagatttctgaccttccagatgctatggagcag-ggtgaaccctccccactgtaccctatctgaatttctagcccacaaaaaccat----gataataaatgattattgttgtctgaagcca---tttagggtaacaggttttgtggcaatag---ata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     153281 551 +    290775 a----------tgcttttaccaaagaagcctgcaac-a-cacatttgtccaattccacatgttctcttt-acagtgtgacttacgctcatcccactaagaggtgaa-g----tgtttcctctcctgaacctaggca------tggccttgcgactgcttggaccagtggaatatctcagaagtgatgctatgtgactttcaaggctttgtgag--gaaaaata------------------a---------ataaataaatacagcttaaacctggctg--gctctctacaactgc----------------------------------------ctc--------cacttgcctttggaact--gtcattaggtcatgaggaataccaggccacatggaaaggccatgtgtaggggtttcagctgacagccct----cgctgaggtctctgccaacagccaacaccc-ccattagacg--ctgagtgaaggatcttttggacaacaacagcccccagatttctgaccttccagatgctatggagcag-ggtgaaccctccccaccgtaccctatctgaatttctagcccacaaaaaccat----gataataaatgattattgttgtctgaagcca---tttagggtaacaggttttgtggcaatag---ata
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2611695 564 -   3067355 Atgcagcagattgcttttaccaaagaagcctgcaac-a-cacatttgtcccattccacatgttctcttt-acagtgtgacttacgcttatcccaccaagaggtgaa-g----cgtttcctctcctgaacctaggca------tggtcttgcgactgcttggaccagtggaatatctcagaagtgatgctacgtgactttcaaggctttctcag--gaaaaata------------------a---------ataaataaatacagcttaaacctggctg--gctctctacaactgc----------------------------------------ctc--------cacttgcctttggaact--gtcattaggtcatgaggaataccaggccacatggaaaggccatgtgtaggggtttcagctgacagccct----cgctgaggtctctgccaacagccaacaccc-ccattagacg--ctgagtgaaggacccttcgaacgacaacagccaccagatttctgaccttctagatgctacggagctg-ggtgaaccctccccactgtaccctatctgaatttctagcccacaaaaaccat----gataataaatgattattgttgtctgaagcca---tttagggtaacaggttttgtggcaatagataaTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30049978 536 + 171630274 Atgcagcagattgtttctatcaaagcagcctgcaac-a-ggcatttgttccattccacatgtgctcttt--tagtgtgacttatgctcattccaccaagaggcaga-g----tgtttgctctcctgaatctaggca------tggccttgtgactgcttggatcagtggagtatctcggaagtgacgctacgtggctttcagggctttgtcag--aaaaaaaa------------------aattatatatatatacatatatagtttaaacctggctg--gctctctacaactgc----------------------------------------ctc--------cacttgcctttgaaact--atcactatgtcataaggaatccc-------------aggccatgtgtaggggtttcaactgata-cccc----tgctgaggtctctgctgatatccaacaccc-ccttt----------agtgaaggaccctttggacaacaccagtccccagacttcagatcttccagatgctgtggagcag-ggtgaactct-cccactgtgctc--------tttctaacttacaaag--cat----gatatataataattattgttgtctgaagcct---tttagggtaacaggttttgtggcaatag---ata
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           198437 565 -    242197 Atgcagcagattgcttttatcaaagcagcctgcaac-a-ggcatttgtcccattccacatgt--tcttt--tagtgtgacttatgctcattccaccaagaggcaga-g----tgtttgctctcctgaatccaggca------tggccttgtgactgcttggatcagtggagtatctcagaagtgatgctgcatggctttcaaggctttgtcagaaaaaaaaaa------------------aaatatatatatatatatatatattttaaacctggctg--gctctctacaactgc----------------------------------------ctc--------cacttgcctttgaaact--atcactaggtcataaggaatcccaggccacatggagaggccatgtgtaggagtttcagctgata-ttct----tgctgaggtctctgctgacatccaacagcc-cctttagacc--ctgagtgaaggacccttcggacaataccagtccccagacttcagatcttccagatgcggtggagcag-ggtgaaccct-tccactgtgctctgtctgaatttctaacttacaaag--cat----gatagataataattattgttgtctgaagcct---tttagggtaacaggttttgtggcaatag---ata
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     191138 578 -   1771730 Ctgcagcagattgtttttatcaaagcagcctgcaac-a-ggcatttgtcccgttccacatgt--tcttt--tagtgtgacttaagctcattccaccaagaggcaaa-g----tgtttgctctcctgaatccaggca------tggccttgtgactgcttggatcagtggaatatctcagaagtgacgctacatggctttcaaggctttgtcag--gaaaaaaaatatatatatatatatatatatatatatatatatatatatagtttaaagctggctg--gctctctacaactgc----------------------------------------ctc--------cacttgcctttgaaact--atcactaggtcataaggaatcccaggccacatg---atgccatatgtaggagtttcagctgaca-ccct----tgctgaagtctctgctgacatccaacaccc-cctttagacc--ctgagtgaaggacccttcaaacaacaccagtccccagacttcagatcttccagatgctgtggagcag-ggtgaaccat-tccactgtgctctatccgcatttctaacttagaaag--cat----gatagataataattattgttgtctgaagcct---tttagggtaacaggttttgtggcaatag---ata
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     266123 566 -    457564 Atgcagcagattgtttttatcaaagcagcctgcaac-a-ggcatttgtcccattccacatgttctcttt--tagtgtgacttatgctcattccaccaagaggcaga-g----tgtttgctctcctgaatctaggca------tggccttgtgacggcttggatcagtggaatatgtcggaagtgatgctatgtggctttcaaagctttgtcag--aagaaaaaa-----------------aaatatatatatatatatatataatttaaacctggctg--gctctctacaactgc----------------------------------------ctc--------cacttgcctttgaaact--atcactaggtcataaggaatcccaggccacatggagaggtcatatgtaggggtttcagctgata-tcct----tgctgaggtctctgctgacatccaacaccc-cctttagacc--ctgagtgaaggaccctttggacaacaccagtccccagacttcagatcttccagatgctgtggagcag-ggtgaaccct-cccactgtgctctatctgaatttctaacttacaaag--cat----gatagataataattattgatgtctgaagcct---tttagggtaacaggttttgtggcaatag---ata
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            86025 590 +  18854210 Gtgcagcagatggttttttccaaagaagactgctgcga-cgtatttattccactccatgtgctctcttt-acaatatgatttacactcatcctatcaagaagcagg-gtctatgtttcttcccctgaatctgggca------cagtctc-tgactgcccagat-aacagaacatgacagaagtgatgctatgcaacttccaaggctttgtcag--aa-----a------------------a---------------agatacaacctaaaccttgctg--gctccccacaactccccccaaccctgcaagtgtctatctgtctgtctgtctctctctc--------cacttgcctctggagtttggtcactacatgatgaggaatctcaggccacctgcaaaggccctg-gtagga-ttccagtcaagaggccc----aaccgaagtctttgctaacggcagacacccaaatttggagg--ctgggtgaaaaagattttggatgactccaacttttagccttcaaatcttccagatgttgaggaatagaaataaattctctccattata--ttgtctgaattattgactcacagaaactgc-------aagagataattattgttgctttaagcct---tttatggtggtagattatttggcaatag---ata
i otoGar3.GL873550         C 0 I 299
s canFam3.chr35            26209938 519 +  26524999 ATGCAGCAGGTGA--TGTGcagaggcag-ctgcaac-agcatatgtgtcccatcccacatggttttttt-atactgtg----atgctaatcccaagaggaggggtctg----tgtttcttcccctggactt--gta------aggccttgtgactgcctggaccaatgggatttggcagaagtgatgccacgggacttccaaggctttgccag--gaaaaaag------------------a------------------cacagggtcaccctagctgaagctctcccctcccat----------------------------------------ctctcccaggacacacacggttagatcccagccaccgagtcacaaggaatcccagcccacgtggaaaggccacggg--agggctccacctgacagtcc------actgaggtctcatctgacagccatcgcccaactttagaccttcccagtga------ctccgg-----------ccccagccttcaagcctcccag---------------tgt-----ctccccaccatccactgt--gagttcctgccccacagaaaccag----g--aataaaatatgactagtgtcttaagccactgtttagggtaaagggttctacagcagtaa---atC
i canFam3.chr35            C 0 I 3
s dasNov3.JH582591            16705 496 +    102524 ATGCAGCTGACCGCTTTT-CCAAGGCAGCTT-CAAC-A-GCCTACTAGCCCATCCCATGTGCTCTTTTTCACAGTGAGCCTGGCGCt--------------------g-----gtcccttcccttgaacc-agggg------tgtctt--aggcagcccagac-agtggggt-tggcagaa-tgatgct--gtgacttcca-ggctgtagcgt--cc-----a------------------t------------------tgcgctgttgtgctgcctg--tcgccatccagcc-c----------------------------------------ctctctcaggacactctcgcctggaaccc-atcgccatgccgtgaggaaccccaggccacctggtaaagctctgtgcaggtgctcccgcagacagccctgctgaatcgag----------acgtccagcctcc-acctggaccc--gcgagtgga-gacctctccagtggctccaggtcc--agccccaagtgtcccagctactgcagaccag-ggcaaatggt--ccac-gtgccct----gagtcccta-cccacagaaaaggg----gagaggcgatgatggctgttgtt--aagccc---ct---------gcgtctcagggcagtGG---AT-
i dasNov3.JH582591         I 899 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e proCoq1.NW_012152574v1     575884 833 +    730504 I

a score=1044918.000000
s hg38.chr6_GL000254v2_alt   865090 106 +   4827813 ATATATGCAGTTTGAATACTGGCTTTGCTCCTTAGT----------------------------TTTGTGACC-------------CCAGAAAATGAACAC------------ACAGTCC--CCTTGCT------T-----------TT-AGATTTGTCCTTCACACCAGAG-----------CTAATGG
s panTro5.chr6             29827758 106 + 175400573 ATATATGCAGTTTGAATGCTGGCTTTGCTCCTTAGT----------------------------TTTGTGACC-------------CCAGAAAATGAACAC------------ACAGTCC--CCTTGCT------T-----------TT-AGATTTGTCCTTCACACCAGAG-----------CTAATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30062587 106 + 173848474 ATATATGCAGTTTGAATGCTGGCTTTGCTCCTTAGT----------------------------TTTGTGACC-------------CCAGAAAATGAACAC------------ACAGTCC--CCTTGCT------T-----------TT-AGATTTGTCCTTCACACCAGAG-----------CTAATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5868897 106 +   6154872 ATATATGCAGTTTGAATGCTGGCTTTGCTCCTTAGT----------------------------TTTGTGACC-------------CCAGAAAATGAACAC------------ACAGTCC--CCTTGCT------T-----------TT-AGATTTGTCCTTCACACCAGAG-----------CTAATGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74577710 107 + 122973662 ATATATGCAgtttgaatgctggctttgctccttagta-------------------------gctttgtgacc-------------CCAGAAAATGAACAC------------ACAGTCC--CCTTGCT------T-----------TTAAGATTTGTC---CACACCAGAG-----------CTAATGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30058960 108 + 172585720 aTATATGCAgtttgaatgcttgctttgctccttagta-------------------------gctctgtgacc-------------CCAGAAAATG-ACAC------------ACAATTC--CCTCGCT------T-----------TT-AGAGTTGTCCTTCACACCAGAG-----------CTAATGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29721804 108 - 170955103 aTATATGCAGTTTGAATGCTTGCTTTGCTCCTTAGTA-------------------------GCTCTGTGACC-------------CCAGAAAATG-ACAC------------ACAATTC--CCTCGCT------T-----------TT-AGAGTTGTCCTTCACACCAGAG-----------CTAATGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2767223 108 -   2996164 aTATATGCAGTTTGAATGCTTGCTTTGCTCCTTAATA-------------------------GCTCTGTGACC-------------CCAGAAAATG-ACAC------------ACAATTC--CCTCGCT------T-----------TT-AGAGTTGTCCTTCACACCAGAG-----------CTAATGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     520838 108 +    766320 aTATATGCAgtttgaatgcttgctttgctccttagta-------------------------gctctgtgacc-------------CCAGAAAATG-ACAC------------ACAATTC--CCTCGCT------T-----------TT-AGAGTTGTCCTTCACACCAGAG-----------CTAATGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28977385 108 -  71996105 aTATATGCAGTTTGAATGCTTGCTTTGCTCCTTAGTA-------------------------GCTCTGTGACC-------------CCAGAAAATG-ACAC------------ACAATTC--CCTCGCT------T-----------TT-AGAGTTGTCCTTCACACCAGAG-----------CTAATGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     153832 108 +    290775 aTATATGCAGTTTGAATGCTTGCTTTGCTCCTTAGTA-------------------------GCTCTGTGACC-------------CCAGAAAATG-ACAC------------ACAATTC--CCTCGCT------T-----------TT-AGAGTTGTCCTTCACACCAGAG-----------CTAATGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2612259 109 -   3067355 ATATATGCAgtttgaatgctggctttgctccttagta-------------------------gctctgtgacc-------------CCAGAAAATGAACAC------------ACAATTC--CCTCGCT------T-----------TT-AGAGTTGTCCTTCACACCAGAG-----------CTAATGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30050514 109 + 171630274 acATATGCAgtttgaatgctggctttgctccttagta-------------------------gctatgtgacc-------------ccagaagatgagcac------------tcaaccc--cctcacc------t-----------tt-agAGTTGTCCTGTGCACCAGAG-----------CTAATGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           199002 109 -    242197 acATATGCAgtttgaatgctggctttgctccttagta-------------------------gctgtgtgacc-------------ccagaaggtgagcac------------acaaccc--cctcacc------t-----------tt-agagttgtcctgtgcaccagag-----------ctaatGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     191716 109 -   1771730 acATATGCAGTTTGAATGCTGGCTTTGCTCCTTAGAA-------------------------GCTGTGTGGCC-------------CCAGAAGGTGAGCAC------------ACAACTC--CCTCACC------T-----------TT-AGAGTTGTCCTGTGCACCAGAG-----------CTAATGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     266689 109 -    457564 acATATGCAgtttgaatgctggctttgctccttagca-------------------------gctatgtgacc-------------CCAGAAGATGAGCAC------------ACAACCC--CCTCACC------T-----------TT-AGAGCTGTCCTGTGCACCAGAG-----------CTAATGG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            86914 146 +  18854210 ACACACACAgtttgaatgct-actctactccttagtactatgacattggacaggactcttcctcttcctgagcagcagcctccctgctggacaatgagcac------------acaaccc--cctccct------t-----------tt-aggactatgctgagcatcagag-----------ctaatgc
i otoGar3.GL873550         I 299 C 0
s canFam3.chr35            26210460 137 +  26524999 ACACATGCAGCTTGACGGTGggctccactccttgttg-------------------------gtgctgtgacc-------------ctggacaagg-gctccctctttgagctgcagtct--ccttgccaaagtat-----------at-gacaccttcctcCTTACAAGGGCTTTCCCAAGCCTCACAG
i canFam3.chr35            I 3 C 0
s dasNov3.JH582591            17201 106 +    102524 ---TGCTCCGTTTGGACACAGGCTC--ACCCTCACTA-------------------------------------------------GCGGGAGATGCTGGC------------CCTGTTCCTCCTTGCC------TGGCACCTTCCCTA-CGGGCTGGCAGTCCCTTCAGAG-----------CCAATGG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e proCoq1.NW_012152574v1     575884 833 +    730504 I

a score=516359.000000
s hg38.chr6_GL000254v2_alt   865196 37 +   4827813 CTGTGAG-----ATGCCCAACACTCCTGGTTGCTCTCTTAAG
s panTro5.chr6             29827864 37 + 175400573 CTGTGAG-----ATGCCCAACACTCCTGGTTGCTCTCTTAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30062693 37 + 173848474 CTGTGAG-----ATGCCCAACACTCCTGGTTGCTCTCTTAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869003 37 +   6154872 CTGTGAG-----ATGCCCAACACTCCTGGTTGCTCTCTTAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74577817 37 + 122973662 CTGTGAG-----ACACCCAACACTCCTGGTTGCTCTCTTAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059068 37 + 172585720 TTGTGAG-----ATGCCTAACACTCCTGGTTGCTCTCTTAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29721912 37 - 170955103 TTGTGAG-----ATGCCTAACACTCCTGGTTGCTCTCTTAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2767331 37 -   2996164 TTGTGAG-----ATGCCTAACACTCCTGGTTGCTCTCTTAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     520946 37 +    766320 TTGTGAG-----ATGCCTAACACTCCTGGTTGCTCTCTTAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28977493 37 -  71996105 TTGTGAG-----ATGCCTAACACTCCTGGTTGCTCTCTTAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     153940 37 +    290775 TTGTGAG-----ATGCCTAACACTCCTGGTTGCTCTCTTAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2612368 37 -   3067355 TTGTGAG-----ATGCCTGACACTCCTGGTTGCTCTCTTAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30050623 37 + 171630274 CTGTGAG-----ATGCCCAACACTCCTGGCTGCTCTCTTAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           199111 37 -    242197 CTGTGAG-----ATGTCCAACACTCCTGGCTGCTCTCCTAAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     191825 37 -   1771730 CTGTGAG-----ATGCCCAACACTCCTGGCTGCTCTCTTAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     266798 37 -    457564 CTGTGAG-----ATGCCCAATACTCCTGGCTGCTCTCTTAAG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     576717 37 +    730504 CTGTGAG-----ACGCCCCACACTCCCGGTTGCTCTCTTAAG
i proCoq1.NW_012152574v1   I 833 I 25
s otoGar3.GL873550            87060 37 +  18854210 ctgtgag-----atgcccagTTCTCCTGGTTGATCTCTTAAT
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26210597 40 +  26524999 CTGAGGACCACCAAGCCCAACACTGCTGGTTTCTCTCCCA--
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            17307 33 +    102524 CGGTATG-----ATGCC---CACCCCTGGCTGCTCTCTTAA-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I

a score=111561.000000
s hg38.chr6_GL000254v2_alt   865233 17 +   4827813 TGATCTCG----TTTGTTTTT
s panTro5.chr6             29827901 21 + 175400573 TGATCTCGTTTATTTGTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30062730 21 + 173848474 TGATCTCGTTTATTTGTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869040 17 +   6154872 TGATCTCG----TTTGCTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74577854 17 + 122973662 TGATCTCG----TTTGTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059105 16 + 172585720 TGATCTCATTTATTTA-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29721949 16 - 170955103 TGATCTCATTTATTTA-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2767368 16 -   2996164 TGATCTCATTTATTTA-----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     520983 21 +    766320 TGATCTCATTTATTTGCTTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28977530 21 -  71996105 TGATCTCATTTATTTGTTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     153977 21 +    290775 TGATCTCATTTATTTGCTTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2612405 21 -   3067355 TGATCTCATTTATTTGTTTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30050660 17 + 171630274 TGATCTCA----TTTGTTTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           199148 17 -    242197 TGatctca----tttgttttt
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     191862 17 -   1771730 TGATCTCA----TTTGCTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     266835 17 -    457564 TGATCTCA----TTTGTTTTT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            87098 17 +  18854210 TGATCTCCTTTATTCAT----
i otoGar3.GL873550         I 1 I 8
s canFam3.chr35            26210637 13 +  26524999 ---CCTC-----TTTGCTTCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            17340 17 +    102524 TCACTTTATTGATTTAA----
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e proCoq1.NW_012152574v1     576754 25 +    730504 I

a score=282584.000000
s hg38.chr6_GL000254v2_alt   865250 30 +   4827813 CTGCTTACTGGTC---------ATCTTCCCACGTCGAGA
s panTro5.chr6             29827922 30 + 175400573 CTGCTCACTGGTC---------ATCTTCCCACGTCGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30062751 30 + 173848474 CTGCTCACTGGTC---------ATCTTCCCACGTCGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869057 30 +   6154872 CTGCTCACTGGTC---------ATCTTCCCACGTCGAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74577871 30 + 122973662 CTGCTCACTGGTC---------ATCTTCCCACATCGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059121 14 + 172585720 -------------------------TTTACATGTCAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29721965 14 - 170955103 -------------------------TTTACATGTCAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2767384 14 -   2996164 -------------------------TTTACATGTCAAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521004 30 +    766320 CTGCTCACTGGTC---------ATCTTCCCATGTCAAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28977551 30 -  71996105 CTGCTCACTGGTC---------ATCTTCCCATGTCAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     153998 30 +    290775 CTGCTCACTGGTC---------ATCTTCCCATGTCAAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2612426 30 -   3067355 CTGCTCACTGGTC---------ATCTTCCCATGTTGAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30050677 30 + 171630274 CTGCTCACTGGTC---------ATCTTCCCATGTCGAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           199165 30 -    242197 ctgctcactggtc---------atcttcccatgtcgaga
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     191879 30 -   1771730 CTGCTCACTGATC---------ATCTTCCCATGTCGAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     266852 30 -    457564 CTGCTCACTGGTC---------ATCTTCCCATGTCGAGA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     576779 30 +    730504 CTGCTTACTGGTC---------ATCTTCCCATCTCGAGA
i proCoq1.NW_012152574v1   I 25 C 0
s otoGar3.GL873550            87123 30 +  18854210 GTGCTTACTAGAT---------ATCTTCCCATCTAAAGA
i otoGar3.GL873550         I 8 I 109
s canFam3.chr35            26210650 37 +  26524999 --GTACTCTGGACCTTCCTTCTGTTTTTCCACAATAAGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            17357 30 +    102524 CTGCTCCCTGGAC---------CTCTTTCCACCTTGAAA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I

a score=17031.000000
s hg38.chr6_GL000254v2_alt   865280 3 +   4827813 --AGG
s panTro5.chr6             29827952 3 + 175400573 --AGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30062781 3 + 173848474 --AGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869087 3 +   6154872 --AGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74577901 3 + 122973662 --AAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059135 3 + 172585720 --AGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29721979 3 - 170955103 --AGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2767398 3 -   2996164 --AGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521034 3 +    766320 --AGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28977581 3 -  71996105 --AGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154028 3 +    290775 --AGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2612456 3 -   3067355 --AGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30050707 3 + 171630274 --ATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           199195 3 -    242197 --atg
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     191909 3 -   1771730 --ATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     266882 3 -    457564 --ATG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     576809 3 +    730504 --AGG
i proCoq1.NW_012152574v1   C 0 I 132
s otoGar3.GL873550            87262 3 +  18854210 --aac
i otoGar3.GL873550         I 109 C 0
s canFam3.chr35            26210687 3 +  26524999 --ATG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            17387 3 +    102524 ACA--
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I

a score=770170.000000
s hg38.chr6_GL000254v2_alt   865283  89 +   4827813 TACAAC-----------------------------------------------GCTTGAAAG--------------------------------------------------------CCATCTTACTCACC------------------ATTTTGCCTCAGTGCC-------------------AAAAAAAGCACCTGCCACAGCAACTCACC--ATCAACACTTGTTG-------A
s panTro5.chr6             29827955  90 + 175400573 TACAAC-----------------------------------------------GCTTGAAAG--------------------------------------------------------CCATCTTACTCACC------------------ATTTTGCCTCAGTCCC------------------AAAAAAAAGCACCTGCCACAGCAACTCACC--ATCAACACTTGTTG-------A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30062784  90 + 173848474 TACAAC-----------------------------------------------GCTTGAAAG--------------------------------------------------------CCATCTTACTCACC------------------ATTTTGCCTCAGTCCC------------------AAAAAAAAGCACCTGCCACAGCAACTCACC--ATCAACACTTGTTG-------A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869090  89 +   6154872 TACAAC-----------------------------------------------ACTTGAAAG--------------------------------------------------------CCATCTTACTCACC------------------ATTTTGCCTCAGTGCC-------------------AAAAAAAGCACCTGCCACAGCAACTCACC--ATAAACACTTGTTG-------A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74577904  89 + 122973662 TACAAC-----------------------------------------------CCTTGAAAG--------------------------------------------------------CCATCTTACTTACC------------------ATTTTCCCTCAGTGCC-------------------AAGCAAAGCACCTGCCACAGCAACTCACC--ATCAACACTTGTTG-------A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059138  89 + 172585720 TACAAC-----------------------------------------------CCTTGAAAG--------------------------------------------------------CCATCTTACTCCCC------------------ATTTTGCCTCAGTGCC-------------------AAGCAAAGCACCTGCCACAGCAACTCACC--ATCAACACTTGTTG-------A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29721982  89 - 170955103 TACAAC-----------------------------------------------CCTTGAAAG--------------------------------------------------------CCATCTTACTCCCC------------------ATTTTGCCTCAGTGCC-------------------AAGCAAAGCACCTGCCACAGCAACTCACC--ATCAACACTTGTTG-------A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2767401  89 -   2996164 TACAAC-----------------------------------------------CCTTGAAAG--------------------------------------------------------CCATCTTACTCCCC------------------ATTTTGCCTCAGTGCC-------------------AAGCAAAGCACCTGCCACAGCAACTCACC--ATCAACACTTGTTG-------A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521037  89 +    766320 TACAAC-----------------------------------------------CCTTGAAAG--------------------------------------------------------CCATCTTACTCCCC------------------ATTTTGCCTCCGTGCC-------------------AAGCAAAGCACCTGACACAGCAACTCACC--ATCAACACTTGTTG-------A
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28977584  89 -  71996105 TACAAC-----------------------------------------------CCTTGAAAG--------------------------------------------------------CCATCTTACTCCCC------------------ATTTTGCCTCAGTGCC-------------------AAGCAAAGCACCTGCCACAGCAACTCACC--ATCAACACTTATTG-------A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154031  89 +    290775 TACAAC-----------------------------------------------CCTTGAAAG--------------------------------------------------------CCATCTTACTCCCC------------------ATTTTGCCTCCATGCC-------------------AAGCAAAGCACCTGACACAGCAACTCACC--ATCAACACTTGTTG-------A
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2612459  89 -   3067355 TACAAC-----------------------------------------------CCTTGAAAG--------------------------------------------------------CCATCTTACTCCCC------------------ATTTTGCCTCAGTGCC-------------------AAGCAAAGCACCTGCCACAGCAACTCACC--ATCAACACTTGTTG-------A
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30050710  94 + 171630274 TACAAC-----------------------------------------------ACTTAAAAG--------------------------------------------------------ctatcttactcacc------------------actttgccccagtgcc-------------------aagcaaagcacctgccacaGCAACTCACC--ATCAACACTTGTTGGGTT--GA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           199198  94 -    242197 tacaac-----------------------------------------------gcttaaaag--------------------------------------------------------ctatcttactcatc------------------actttgccccagtgcc-------------------aaggaaagcacctgccacagcaactaacc--atcaacacttgttggatT--TA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     191912  94 -   1771730 TACAAC-----------------------------------------------GCTTAAAAG--------------------------------------------------------CTGTCTTACTCACC------------------ACTTAGCCCCAGTACC-------------------AAGGAAAGCACCTGCCACAGCAACTCACC--ATCAACACTTGTTGGATT--GA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     266885  94 -    457564 TAAAAC-----------------------------------------------GCTTAAAAG--------------------------------------------------------ctatcttactcacc------------------actttgccccagtgcc-------------------aagcaaagcacctgccacaGCAACTCACC--ATCAACACTTGTTGGATT--GA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            87265 238 +  18854210 tacaacaacaaaaaaatagccaggcattgtggtgggcacctgtagtcccagctacttgggaggctaaagcaagggaatcacttaagcccaagagttgaggttgctgtgagctgtgactccaccatactctattgagggtgacatagtaagactctgtctcaaaaattaaattaaattaaatcaaaAAAAAAAGTGCCTGCCATAGCAATGTGGTGAATCAACACTTGCTGGATTAAAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26210690  74 +  26524999 TGCA-------------------------------------------------TCTGTGAAG--------------------------------------------------------C---------CCCC------------------------------TGCC-------------------CAGAGGAATGCCCGACCCAGCAGCATCCCCAATCAAAACTCGTTT-GTTGAAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            17390  50 +    102524 TACACC-----------------------------------------------CTAAGAAAG--------------------------------------------------------C-----------CC------------------AGCTTGT-GCACTGCC----------------------------------------------CA--AGCAACACCTGTTG-------A
i dasNov3.JH582591         C 0 I 17
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e proCoq1.NW_012152574v1     576812 132 +    730504 I

a score=368406.000000
s hg38.chr6_GL000254v2_alt   865372 36 +   4827813 AGATCACCTAACTAATGTAGCAGCCAAGTGCACACA
s panTro5.chr6             29828045 36 + 175400573 AGATCACCTAACTAATGTAGCAGCCAAGTGCACACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30062874 36 + 173848474 AGATCACCTAACTAATGTAGCAGCCAAGTGCACACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869179 36 +   6154872 AGATCACCTAACTAACGTAGCAGCCAAGTGCACACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74577993 36 + 122973662 AGATCACCTAACTAATGTAGCAGCCAAGTGTGCACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059227 36 + 172585720 AGATAACCCAACTAATGTAGCAACCAAGTGCACACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722071 36 - 170955103 AGATAACCCAACTAATGTAGCAACCAAGTGCACACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2767490 36 -   2996164 AGATAATCCAACTAATGTAGCAACCAAGTGCACACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521126 36 +    766320 AGATAACCCAACTAATGTAGCAACCAAGTGCACACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28977673 36 -  71996105 AGATAACCCAACTAATGTAGCAACCAAGTGCACACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154120 36 +    290775 AGATAACCCAACTAATGTAGCAACCAAGTGCACACA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2612548 36 -   3067355 AGATAACCCAACTAACGTAGCAACCAAGTGCACACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30050804 36 + 171630274 AGATAAAAAAACTAATGGAGCAGCCAAGTGCGCATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           199292 36 -    242197 AGATAACAAAACTAATGCAGCAGCCAAGTGCACACA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     192006 36 -   1771730 AGATAACAAAACTAACACAGCAGCCAAGTGCGCACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     266979 36 -    457564 AGATAACAAAACTAATGCAGCAGCCAAGTGCGCACA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            87503 32 +  18854210 AGATAACAAAAC----ACAGCAGCCAAGTGTATATA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26210764 35 +  26524999 CGATAACAAAAGCAGCATAGCC-CAGAGTGCTCCCA
i canFam3.chr35            C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            17440 17 +    102524 I
e proCoq1.NW_012152574v1     576812 132 +    730504 I

a score=318361.000000
s hg38.chr6_GL000254v2_alt   865408 30 +   4827813 AAGTGCTCTCTACTGGTAGACAACCAACAG-----------
s panTro5.chr6             29828081 30 + 175400573 AAGTGCTCTCTACTGGTAGACAACCAACAG-----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30062910 30 + 173848474 AAGTGCTCTCTACTGGTAGACAACCAACAG-----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869215 30 +   6154872 AAGTGCTCTCTACTGGTAGACAACCAACAG-----------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578029 30 + 122973662 AAGTGCTCTCTACTGGTAGACAACCAACAG-----------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059263 30 + 172585720 AAATGCTCTCCACTGGTAGACAACCAACAG-----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722107 30 - 170955103 AAATGCTCTCCACTGGTAGACAACCAACAG-----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2767526 30 -   2996164 AAATGCTCTCCACTGGTAGACAACCAACAG-----------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521162 30 +    766320 AAATGCTCTCCACTGGTAGACAACCAACAG-----------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28977709 30 -  71996105 AAATGCTCTCTACTGGTAGACAACCAACAG-----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154156 30 +    290775 AAATGCTCTCCACTGGTAGACAACCAACAG-----------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2612584 30 -   3067355 AAATGCTCTCCACTGGTAGACAACCAACAG-----------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30050840 30 + 171630274 AAATGCTCTCTATTGGTAGACAACCAACAT-----------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           199328 29 -    242197 AAATGCT-TCTATTGGTAGACAACCAACAG-----------
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     192042 29 -   1771730 AAGTGCT-TCTATTGGTAGACAACCAACAG-----------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     267015 30 -    457564 AAATGCTCTCTATTGGTAGACAACCAACAG-----------
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            87535 30 +  18854210 AAATGTTCTCCATTAGTAAGTGACCAGTAT-----------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26210799 21 +  26524999 CA-TGCTGTGT----GTGAGTGACCA---------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            17457 41 +    102524 AAATGCTCCCTACTGGTAAGTGATTGGTAAGTGACTAGTAC
i dasNov3.JH582591         I 17 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e proCoq1.NW_012152574v1     576812 132 +    730504 I

a score=239212.000000
s hg38.chr6_GL000254v2_alt   865438 14 +   4827813 GAGGGCAGGGAGGC
s panTro5.chr6             29828111 14 + 175400573 GAGGGCAGGGAGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30062940 14 + 173848474 GAGGGCAGGGAGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869245 14 +   6154872 GAGGGCAGGGAGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578059 14 + 122973662 GAGGGCAGGGAGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059293 14 + 172585720 GAGGGCAGGGAGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722137 14 - 170955103 GAGGGCAGGGAGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2767556 14 -   2996164 GAGGGCAGGGAGGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521192 14 +    766320 GAGGGCAGGGAGGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28977739 14 -  71996105 GAGGGCAGGGAGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154186 14 +    290775 GAGGGCAGGGAGGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2612614 14 -   3067355 GAAGGCAGGGAGGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30050870 14 + 171630274 GAGGGCAGGGAGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           199357 14 -    242197 GAGGGCAGGGAGGT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     192071 14 -   1771730 GAGGGCAGGGAGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     267045 14 -    457564 GAGGGCAGGGAGGC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     576944 14 +    730504 GAGGGCAGGGAGGC
i proCoq1.NW_012152574v1   I 132 C 0
s otoGar3.GL873550            87565 14 +  18854210 GAGAACAGGGAGGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26210820 11 +  26524999 ---GGCAGGGAGGC
i canFam3.chr35            C 0 I 64
s dasNov3.JH582591            17498 14 +    102524 AAGGGCAGGGAGGC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I

a score=215175.000000
s hg38.chr6_GL000254v2_alt   865452 15 +   4827813 AACA-------GGCTAAGTCAG
s panTro5.chr6             29828125 15 + 175400573 AACA-------GGCTAAGTCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30062954 15 + 173848474 AACA-------GGCTAAGTCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869259 15 +   6154872 AACA-------GGCTAAGTCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578073 15 + 122973662 AACG-------GGCTAAGTCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059307 15 + 172585720 AACA-------GGCTAAGTCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722151 15 - 170955103 AACA-------GGCTAAGTCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2767570 15 -   2996164 AACA-------GGCTAAGTCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521206 15 +    766320 AACA-------GGCTAAGTCAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28977753 15 -  71996105 AACA-------GGCTAAGTCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154200 15 +    290775 AACA-------GGCTAAGTCAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2612628 15 -   3067355 AACA-------GGCTAAGTCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30050884 15 + 171630274 AACA-------GGCTAAGTCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           199371 15 -    242197 AACA-------GGCTAAGTCAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     192085 15 -   1771730 AACA-------GGCTAAGTCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     267059 15 -    457564 AACA-------GGCTAAGTCAG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     576958 15 +    730504 AAGA-------GGCCAAGTCAG
i proCoq1.NW_012152574v1   C 0 I 106
s otoGar3.GL873550            87579 22 +  18854210 AACAAGGGGTCAGCCAAGTCAG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            17512 15 +    102524 AAGA-------GGCCAAGTCAG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e canFam3.chr35            26210831 64 +  26524999 I

a score=382928.000000
s hg38.chr6_GL000254v2_alt   865467 35 +   4827813 GGAAAAGCAGGGGACATGGAAGCCTGC-AGGCAGTC
s panTro5.chr6             29828140 35 + 175400573 GGAAAAGCAGGGGACATGGAAGCCTGC-AGGCAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30062969 35 + 173848474 GGAAAAGCAGGGGACATGGAAGCCTGC-AGGCAGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869274 35 +   6154872 GGAAAAGCAGGGGACATGGAAGCCTGC-AGGCAGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578088 35 + 122973662 GGAAAAGCAGGGGACATGGAAGCCTGC-AGGCAGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059322 35 + 172585720 GGAAAAGCAGGGGACATGGAAGCCTGC-AGGAAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722166 35 - 170955103 GGAAAAGCAGGGGACATGGAAGCCTGC-AGGAAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2767585 35 -   2996164 GGAAAAGCAGGGGACATGGAAGCCTGC-AGGAAGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521221 35 +    766320 GGAAAAGCATGGGACATGGAAGCCTGC-AGGCAGTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28977768 35 -  71996105 GGAAAAGCAGGGGACATGGAAGCCTGC-AGGCAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154215 35 +    290775 GGAAAAGCATGGGACATGGAAGCCTGC-AGGCAGTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2612643 35 -   3067355 GGAAAAGCAGGGGACATGGAAGCCTGC-AGGCAGTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30050899 35 + 171630274 GGAAAAGCAGGGGATACTGAAGCCTGC-GGGCAGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           199386 35 -    242197 GGAAAAGCAGGGGATATGGAAGCCTGA-AGGTAATC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     192100 35 -   1771730 AGAAATGCAGGGGATACGGAAGCCTGC-AGGCAGTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     267074 35 -    457564 GGAAAAGCAGGGGATACGGAAGCCTGC-AGGCAGTC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            87601 25 +  18854210 GGGAAAGCAGAAGGCACTGAGGCTT-----------
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            17527 33 +    102524 GGGCGAGCAGGGG---CAGAGGCCTGCGAGGCAGCC
i dasNov3.JH582591         C 0 I 473
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e proCoq1.NW_012152574v1     576973 106 +    730504 I
e canFam3.chr35            26210831 64 +  26524999 I

a score=715945.000000
s hg38.chr6_GL000254v2_alt   865502 87 +   4827813 TACATTCTAGGACATTCCAGAGTTAGAAAGTGATCTGAACCCTACC----CAAAGGCAGGTC-T----GAAAGGC---AAAGCCTGCCTCACAGTGCAC-
s panTro5.chr6             29828175 87 + 175400573 TACATTCTAGGACATTCCAAAGTTAGAAAGTGATCTGAACCCTACC----CAAAGGCAGGTC-T----GAAAGGC---AAAGCCTGCCTCACAGAGCCC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063004 87 + 173848474 TACATTCTAGGACATTCCAAAGTTAGAAAGTGATCTGAACCCTACC----CAAAGGCAGGTC-T----GAAAGGC---AAAGCCTGCCTCACAGAGCCC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869309 87 +   6154872 TACATTCTAGGACATTCCAGAGTTAGAAAGTGATCTGAACCCTACC----CAAAGGCAGGTC-T----GAAAGGC---AAAGCCTGCCTCACAGTGCCC-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578123 91 + 122973662 TACATTCTAGGACATTCCAAAGTTAGAAAGTGATCTGAACCCTACC----CAAAGGCAGGGCGT----GGGATCCTCTAGAGTCGACCTGCAGGCATGC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059357 88 + 172585720 TACATTCCAGGACATTCCAAAGTCAGAAAGTGATCTGAACCCTACC----CTAAGGCAGGGC-T---GGAAACGC---AAAGCGTGCCTCACAGAGCCC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722201 88 - 170955103 TACATTCCAGGACATTCCAAAGTCAGAAAGTGATCTGAACCCTACC----CTAAGGCAGGGC-T---GGAAACGC---AAAGCGTGCCTCACAGAGCCC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2767620 88 -   2996164 TACATTCCAGGACATTCCAAAGTCAGAAAGTGATCTGAACCCTACC----CTAAGGCAGGGC-T---GGAAACGC---AAAGCGTGCCTCACAGAGCCC-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521256 92 +    766320 TACATTCCAGGACATTCCAAAGTCAGAAAGTGATCTGAACCCTACCCTGACTAAGGCAGGGC-T---GGAAACGC---AAAGCATGCCTCACAGAGCCC-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28977803 92 -  71996105 TACATTCCAGGACATTCCAAAGTCAGAAAGTGATCTGAACCCTACCCTGACTAAGGCAGGGC-T---GGAAACGC---AAAGCGTGCCTCACAGAGCCC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154250 92 +    290775 TACATTCCAGGACATTCCAAAGTCAGAAAGTGATCTGAACCCTACCCTGATTAAGGCAGGGC-T---GGAAACGC---AAAGCATGCCTCACAGAGCCC-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2612678 92 -   3067355 TACATTCCAGGACATTCCAAAGTCAGAAAGTGATCTGAACCCTACCCTGACTAAGGCAGGGC-T---GGAAATGC---AAAGCGTGCCTCACAGAGCCC-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30050934 69 + 171630274 TACATTCCAGGACATTCCAAAGTTAGAAAGTGATCTGAACCCTACT----CTAAGGG--------------------------CTGCCTCCTAGTTCCC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           199421 88 -    242197 TACATTCCAGGACATTCCAAAGTTAGAAAGTGATCTGAACCCTACT----CTAAGGAAGGGC-T---GCAAATGG---AAAGCCTGCCTCACAGTTCCC-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     192135 88 -   1771730 TACATTCCAGGACATTCCAAAGTTAGAAAATGATCTGAACCCTACT----CTAAGGAAGCGC-T---GGAAATGC---AAAGCCTGCCTCACAGTTCCC-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     267109 87 -    457564 TACATTCCAGGACATTCCAAAGTCAG-AAGTGATCTGAACCCTACT----CTAAGGAAGGAC-T---GGAAATGC---AAAGCCTGCCTAACAGTTCCC-
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            87626 85 +  18854210 ----------GATGTTCCAAAGTCAAGCCTGAGGGTGAATGCCAACCTGACTAAGACAAAGA-TTTCGGAAATGC---AAAGCCTGCCT-ACAGATGTGG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                77535 4596 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            17560 473 +    102524 I
e proCoq1.NW_012152574v1     576973 106 +    730504 I
e canFam3.chr35            26210831 64 +  26524999 I

a score=829562.000000
s hg38.chr6_GL000254v2_alt   865589 61 +   4827813 AGG---GAGCAAGTCCTCCCAGAACTGCCAAGCGGTAGCCTCTCCACCTGGCAACACATCTCCT
s panTro5.chr6             29828262 61 + 175400573 AGG---GAGCAAGTCCTCCCAGAACTGCCAAGTGGTGGCCTCTCCACCTGGCAACACATCTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063091 61 + 173848474 AGG---GAGCAAGTCCTCCCAGAACTGCCAAGTGGTGGCCTCTCCACCTGGCAACACATCTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869396 61 +   6154872 AGG---GAGCAAGTCCTCCCAGAACTGCCAAGTGATGGCCTCTCCACCTGGCAACACATCTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578214 58 + 122973662 AAGCTTGAGTA------TTCAGAACTGCCAAGTGGTGGCCTCTCCACCTGGCAACACATCTCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059445 61 + 172585720 AGG---GAGCAAGTCCTCCCAGAACTGCCAAGTGGTAGCCTCTCCACCTGGCAACACATCTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722289 61 - 170955103 AGG---GAGCAAGTCCTCCCAGAACTGCCAAGTGGTAGCCTCTCCACCTGGCAACACATCTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2767708 61 -   2996164 AGG---GAGCAAGTCCTCCCAGAACTGCCAAGTGGTAGCCTCTCCACCTGGCAACACATCTCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521348 61 +    766320 AGG---GAGCAAGTCCTCCCAGAACTGCCAAGTGGTAGCCTCTCCACCTGGCAACACATCTCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28977895 61 -  71996105 AGG---GAGCAAGTCCTCCCAGAACTGCCAAGTGGTAGCCTCTCCACCTGGCAACACATCTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154342 61 +    290775 AGG---GAGCAAGTCCTCCCAGAACTGCCAAGTGGTAGCCTCTCCACCTGGCAACACATCTCCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2612770 61 -   3067355 AGG---GAGCAAGTCCTCCCAGAACTGCCAAGTGGTAGCCTCTCCACCTGGCAACACATCTCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30051003 61 + 171630274 AGG---AAGCAAGTCCTCGCAGAACTGCCAAGTGGTGGCCTCTCCACCTGGCAACATATCCCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           199509 61 -    242197 AGG---AAGCAAGTCCTCCCAGAACTACCAAGTGGTGGCCTCTCCACCTGGCAACATATCCCCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     192223 61 -   1771730 AGG---AAGCAAGTCCTCCCAGAACTACCAAGTGGTGACCTCTTCACCTGGCAACATATCCCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     267196 61 -    457564 AGG---AAGCAAGTCCTCCCAGAACTACCAACTGGTGGCCTCTTCACCTGGCAACATATCCCCT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                82131 61 + 123392446 AGG---GAGAAAGTCTGCCCAGAACTGCCGAGCAGTGGCCTCACCGCCTGGCCACACGTCCCCT
i micMur3.chr6             I 4596 C 0
s proCoq1.NW_012152574v1     577079 61 +    730504 AGG---GAGCAAGACCTCTCAGAACTGCTGAGCGGTGGCCTCACCGCCTGGCCACACGTCCCCT
i proCoq1.NW_012152574v1   I 106 I 49
s otoGar3.GL873550            87711 61 +  18854210 AGG---GAGCAAGTCCTTCCAGAACAGCTGAGTGGTGGCCTCACTGCCCAGCAACATATCCCCT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            17560 473 +    102524 I
e canFam3.chr35            26210831 64 +  26524999 I

a score=38844.000000
s hg38.chr6_GL000254v2_alt   865650 5 +   4827813 TTGCA
s panTro5.chr6             29828323 5 + 175400573 TTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063152 5 + 173848474 TTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869457 5 +   6154872 TTGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578272 5 + 122973662 TTACG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059506 5 + 172585720 TTGCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722350 5 - 170955103 TTGCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2767769 5 -   2996164 TTGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521409 5 +    766320 TTGCG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28977956 5 -  71996105 TTGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154403 5 +    290775 TTGCG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2612831 5 -   3067355 TTGCG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30051064 5 + 171630274 TTGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           199570 5 -    242197 TTGCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     192284 5 -   1771730 TTGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     267257 5 -    457564 TTGCA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                82192 5 + 123392446 GGGCA
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550            87772 5 +  18854210 TGGCA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            17560 473 +    102524 I
e proCoq1.NW_012152574v1     577140 49 +    730504 I
e canFam3.chr35            26210831 64 +  26524999 I

a score=67223.000000
s hg38.chr6_GL000254v2_alt   865655 6 +   4827813 CCCCTT
s panTro5.chr6             29828328 6 + 175400573 CCCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063157 6 + 173848474 CCCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869462 6 +   6154872 CCCCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578277 6 + 122973662 CCCCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059511 6 + 172585720 CCTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722355 6 - 170955103 CCTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2767774 6 -   2996164 CCTCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521414 6 +    766320 CCTCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28977961 6 -  71996105 CCTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154408 6 +    290775 CCTCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2612836 6 -   3067355 CCTCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30051069 6 + 171630274 CCCCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           199575 6 -    242197 CCCCTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     192289 6 -   1771730 CCACTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     267262 6 -    457564 CCCCTT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                82197 6 + 123392446 CCCCTT
i micMur3.chr6             C 0 I 39
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            17560 473 +    102524 I
e proCoq1.NW_012152574v1     577140 49 +    730504 I
e canFam3.chr35            26210831 64 +  26524999 I
e otoGar3.GL873550            87777 0 +  18854210 C

a score=266173.000000
s hg38.chr6_GL000254v2_alt   865661 27 +   4827813 GGGGTACAATtatatattaattatata
s panTro5.chr6             29828334 27 + 175400573 GGGGTACAATtatatattaattatata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063163 27 + 173848474 GGGGTACAATtatatattaattatata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869468 27 +   6154872 GGGGTACAATtatatattaattagata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578283 27 + 122973662 GGGGTACAATtatatattaattatata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059517 27 + 172585720 GGGGTACAATTATACATTAATTAAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722361 27 - 170955103 GGGGTACAATTATACATTAATTAAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2767780 27 -   2996164 GGGGTACAATTATACATTAATTAAATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521420 27 +    766320 GGGGTACAATTATACATTAATTAAATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28977967 27 -  71996105 GGGGTACAATTATACGTTAATTAAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154414 27 +    290775 GGGGTACAATTATACATTAATTAAATA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2612842 27 -   3067355 GGGGTACAATTATACATTAATTAAATA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30051075 26 + 171630274 -GGGTACAattatatattaattatata
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           199581 27 -    242197 GGGGTACaattacatagtaattatata
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     192295 27 -   1771730 GGGGtacaattacatattaattatata
i cebCap1.NW_016107755v1   C 0 I 502
s aotNan1.NW_018509740v1     267268 27 -    457564 GGGGTACGATTATATATTAATTATATA
i aotNan1.NW_018509740v1   C 0 I 500
e micMur3.chr6                82203 39 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            17560 473 +    102524 I
e proCoq1.NW_012152574v1     577140 49 +    730504 I
e canFam3.chr35            26210831 64 +  26524999 I
e otoGar3.GL873550            87777  0 +  18854210 C

a score=1064335.000000
s hg38.chr6_GL000254v2_alt   865688 184 +   4827813 tcattgt------gtgtgtgtatatgta----------tatatgtgtgtgtgtatgtgtgtgtata--tctcattgtaattatata----taATGTACTAATAATTAGTATTAGTGCTAATCAATAGCACCATTCACCCtgaaaagacactttcagaaatg-aatacatgaagtctcattgtagataagcattgacaga-tgaacatt
s panTro5.chr6             29828361 186 + 175400573 tcattgc------gtgtgtgtatatgta----------tatatgtgtgtgtgtgtgtatatatatatCTCTCattataattatata----taatgtactaataattagtattagtgctaatcaatggcacctttcaccctgaaaagacactttcagaaatg-aatacatgaagtctcattgtagataagcattgacaga-tgaacatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063190 186 + 173848474 tcattgt------gtgtgtgtatatgta----------tatatgtgtgtgtgtgtatatatatatatCTCTCattataattatata----taatgtactaataattagtattagtgctaatcaatggcacttttcaccctgaaaagacactttcagaaatg-aatacatgaagtctcattgtagataagcattgacaga-tgaacatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869495 178 +   6154872 tcattgt------gtgtgtgtatatgta----------tatatgtgtgtgtgtatatata--------tctcattgtaattatata----taATGTACTAATAattagtattagtgctaatcaatagcacctttcaccctgaaaagacactttcagaaatg-aatacatgaagtctcattgtagataagcattgacaga-tgaacatt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578310 182 + 122973662 tcattgt------gtgtgtgtatgtata----------tatgtgtgtgtatatatatata--------tctcattgtaattatatataATTAATGTACTAATAattagtattagtgctcatcaatatcacctttctccctgaaaagacactttcaaaaatg-aatacatgaagtctcattgtagacaagcattgacaga-tgaacatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059544 188 + 172585720 TCTTTGA------gtgtgtgtgtgtgtg----------tgtgtgtgtg--tatgtgtgtgtgtATATATCTCATTGTAATTATATATAATTAATACCTTAATAattagtattagtgctaatcaatagcacctttctccctgaaaagacactttcaaaaatg-gatacatgaagtctgattgtagatgagcattgacaga-tgtacact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722388 186 - 170955103 TCTTTGA------gtgtgtgtgtgtgtg----------tgtgtatatg----tgtgtgtgtgtATATATCTCATTGTAATTATATATAATTAATACCTTAATAattagtattagtgctaatcaatagcacctttctccctgaaaagacactttcaaaaatg-gatacatgaagtctgattgtagatgagcattgacaga-tgtacatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2767807 186 -   2996164 TCATTGA------gtgtgtatgtgtgtg----------tgtgtgtatg----tgtgtgtgtgtATATATCTCATTGTAATTATATATAATTAATACCTTAATAattagtattagtgctaatcaatagcacctttctccctgaaaagacactttcaaaaatg-gatacatgaagtctgattatagatgagcattgacaga-tgtacatt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521447 190 +    766320 TCATtga------gtgtgtgtgtgtgtg----------tatatatatgtgtgtgtgtgtgtgtATATATCTCATTGTAATTATATATAATTAATACCTTAATAattagtattagtgctaatcaatagcacctttctccctgaaaaggcactttcaaaaatg-aatacatgaaatctgattgtagatgagcattgacaga-tgtacatt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28977994 196 -  71996105 TCATTGAgtgtgtgtgtgtgtgtgtgtg----------tgtgtgtatgtgtgtgtgtgtgtATATATATCTCATTGTAATTATATATAATTAATACCTTAATAattagtattagtgctaatcaatagcacctttctccctgaaaagacactttcaaaaatg-aatacatgaagtctgattgtagatgagcattgacaga-tgtacatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154441 190 +    290775 TCATtga------gtgtgtgtgtgtgta----------tataaatatgtgtgtgtgtgtgtgtATATATCTCATTGTAATTATATATAATTAATACCTTAATAattagtattagtgctaatcaatagcacctttctccctgaaaaggcactttcaaaaatg-aatacatgaaatctgattgtagatgagcattgacaga-tgtacatt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2612869 189 -   3067355 TCATtga------gtgtgtgtgtatata----------tatatgtgtgtgtgtatatatatatatctatctcattgtaattatatataa-taatacatTAATAattagtattagtactaatcaatagcacctttctccctgaaaagacactttcaaaaatg-aatacatgaagtctgattgtagatgagcattgacaga-tgtacatt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30051101 176 + 171630274 --attat------aagtatatattattatataatatattatattaat-----tacatata-atatatattatat----ataatatataatTAATACACTAATAattagtat-------------tagcacctttctgcctgaaaagacactttcagaaatgaaatacatgaagtcttattgtagataagcattgacaga-taaacatt
i calJac3.chr4             C 0 I 310
s saiBol1.JH378357           199608 171 -    242197 --atcat------aatt---tattatta----------tatattaat-----tatatata-at-tatataacat-----taat-tataattaatacactaattagtattagca---ctaatcaatagcacctttctgcctgaaaagacattttcagaaatgaaatacatgaagtcacattgtagacaagcattgacagattaaacatt
i saiBol1.JH378357         C 0 C 0
e micMur3.chr6                82203  39 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            17560 473 +    102524 I
e proCoq1.NW_012152574v1     577140  49 +    730504 I
e canFam3.chr35            26210831  64 +  26524999 I
e otoGar3.GL873550            87777   0 +  18854210 C
e aotNan1.NW_018509740v1     267295 500 -    457564 I
e cebCap1.NW_016107755v1     192322 502 -   1771730 I

a score=145395.000000
s hg38.chr6_GL000254v2_alt   865872 13 +   4827813 tgcaactgatctt
s panTro5.chr6             29828547 13 + 175400573 tgcaactgatctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063376 13 + 173848474 tgcaactgatctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869673 13 +   6154872 tgcaactgatctt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578492 13 + 122973662 tgcaactgatctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059732 13 + 172585720 tgcaactgatctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722574 13 - 170955103 tgcaactgatctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2767993 13 -   2996164 tgcaactgatctt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521637 13 +    766320 tgcaactgatctt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28978190 13 -  71996105 tgcaactgatctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154631 13 +    290775 tgcaactgatctt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2613058 13 -   3067355 tgcaactgatctt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30051587 13 + 171630274 tgcaactgatctt
i calJac3.chr4             I 310 C 0
s saiBol1.JH378357           199779 13 -    242197 tgcaactgatttt
i saiBol1.JH378357         C 0 I 297
s cebCap1.NW_016107755v1     192824 13 -   1771730 tgcaactgatctt
i cebCap1.NW_016107755v1   I 502 C 0
s aotNan1.NW_018509740v1     267795 13 -    457564 tgcaactgatctt
i aotNan1.NW_018509740v1   I 500 C 0
e micMur3.chr6                82203 39 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            17560 473 +    102524 I
e proCoq1.NW_012152574v1     577140 49 +    730504 I
e canFam3.chr35            26210831 64 +  26524999 I
e otoGar3.GL873550            87777  0 +  18854210 C

a score=49214.000000
s hg38.chr6_GL000254v2_alt   865885 6 +   4827813 aatcat
s panTro5.chr6             29828560 6 + 175400573 aatcat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063389 6 + 173848474 aatcat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869686 6 +   6154872 aatcat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578505 6 + 122973662 aatcat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059745 6 + 172585720 aatcat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722587 6 - 170955103 aatcat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768006 6 -   2996164 aatcat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521650 6 +    766320 aatcat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28978203 6 -  71996105 aatcat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154644 6 +    290775 aatcat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2613071 6 -   3067355 aatcat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30051600 6 + 171630274 aatcag
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     192837 6 -   1771730 aatcag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     267808 6 -    457564 agtcag
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6                82203 39 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            17560 473 +    102524 I
e proCoq1.NW_012152574v1     577140 49 +    730504 I
e canFam3.chr35            26210831 64 +  26524999 I
e saiBol1.JH378357           199792 297 -    242197 I
e otoGar3.GL873550            87777 0 +  18854210 C

a score=1699092.000000
s hg38.chr6_GL000254v2_alt   865891 167 +   4827813 caggaacattaactgtgaactcaaataagtagttatctcaaaattgtttttcttattagtaggaggcctgtatgaaaaatagtgctcagtcatgttttaaatttggccagtaaaaatctt-acaagttctcttctaagtacctttttaatattctcaatctcactcct
s panTro5.chr6             29828566 167 + 175400573 caggaacattaactgtgaactcaaacaagtagttatctcaaaattgtttttcttattagtaggaggcctgtatgaaaaatagtgctcagtcatgttttaaatttggccagtaaaaatctt-acaagttctcttctaagtacctttttaatatcctcaatctcactcct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063395 167 + 173848474 caggaacattaactgtgaactcaaacaagtagttatctcaaaattgtttttcttattagtaggaggcctgtatgaaaaatagtgctcagtcatgttttaaatttggccagtaaaaatctt-acaagttctcttctaagtacctttttaatatcctcaatctcactcct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869692 165 +   6154872 caggaacattaactgtgaactcaaacaagtagttatctcaaaattgtttttcttattagtaggaggcctgtatgaaaaatagtgct--GTCATGTTTTAAATTTGGCCAGTAAAAATCTT-ACAAGTTCTCTTCTAAGTATCTTTTTAATATCCTCAATCTCACTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578511 167 + 122973662 caggaacattaactgtgaactcaaacaagtagttatctcaaaattatttttcttattagtaggaggcctgtatgaaaaatagtgctcagtcatgttttaaatttggccagtaaaaatctt-acaagttctcttctaagtacctttttaatatcctcaatctcactcct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059751 167 + 172585720 caggaacattaactgtgaactcaaacaagcagttatctcaaaattgtttttcttattagtaggaggcctgtatgaaaaacagtgctcagtcatgttttaaatttggccagtaaaaatctt-acaagttctcttctaagtacctttataatatcctcaatctcactcct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722593 167 - 170955103 caggaacattaactgtgaactcaaacaagcagttatctcaaaattgtttttcttattagtaggaggcctgtatgaaaaacagtgctcagtcatgttttaaatttggccagtaaaaatctt-acaagttctcttctaagtacctttataatatcctcaatctcactcct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768012 167 -   2996164 caggaacattaactgtgaactcaaacaagcagttatctcaaaattgtttttcttattagtaggaggcctgtatgaaaaacagtgctcagtcatgttttaaatttggccagtaaaaatctt-acaagttctcttctaagtacctttataatatcctcaatctcactcct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521656 165 +    766320 caggaacattaactgtgaactcaaacaagcagttatctcaaaattgtttttcttattagtaggaggcctgtatgaaaaacagtgct--atcatgttttaaatttggccagtaaaaatctt-acaagttctcttccaagtacctttataatatcctcaatctcactcct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28978209 167 -  71996105 caggaacattaactgtgaactcaaacaagcagttatctcaaaattgtttttcttattagtaggaggcctatacgaaaaacagtgctcagtcatgttttaaatttggccagtaaaaatctt-acaagttctcttctaagtacctttataatatcctcaatctCATTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154650 165 +    290775 caggaacattaactgtgaactcaaacaagcagttatctcaaaattgtttttcttattagtaggaggcctgtatgaaaaacagtgct--atcatgttttaaatttggccagtaaaaatctt-acaagttctcttctaagtacctttataatatcctcaatctcactcct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2613077 167 -   3067355 caggaacattaactgtgaactcaaacaagcagttatctcaaaattgtttttcttattagtaggaggcctgtatgaaaaacagtgctcagtcatgttttaaatttggccagtaacaatcct-acaagttctcttctaagtatctttataatatcctcaatctcactcct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30051606 164 + 171630274 caggaacattaactgtgaattcaaacaagtagttatctcaaaattgtttttcttattagt---aggcctgtatgaaaaacaatGCTCATTCATGTTTTAAATTTGGTCAGTAAAAATCTT-ACAAGTTCTCTTCTAAGTTCCTTTCTAATATCCGCAATCTCACTCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           200089 163 -    242197 cagaaacattaactgtgaactcaaacaagcagttatctcaaaattgtttttcttattagt---aggcctgtatgaaaa--agtgctcagtcatGCTTTAAATTTGGTCAGTAAAAATCTTAACAAGTTCTCTTCTAAGTTACTTTATAATATCCTCAATCTCACTCCT
i saiBol1.JH378357         I 297 C 0
s cebCap1.NW_016107755v1     192843 164 -   1771730 caggaacattaactgtgaactcaaacaagtagttatctcaaaattgtttttcttactagt---aggcctgtatgaaaaacagtgcgcagtcatgctttaaatttggtcagtaaaaatctt-gcaagttctcttctaagttcctttataatatcctcaatctcactcct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     267814 164 -    457564 caggaacattaactgtgaactcaaacaagtagttatctcaaaattgtttttcttattagt---aggcttgtatgaaaaacagtgctccgtcatgctttaaatttggtcagtaaaaatctt-acaagttctcttctaagttcctttataatatcctcaatctcacccct
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6                82203  39 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            17560 473 +    102524 I
e proCoq1.NW_012152574v1     577140  49 +    730504 I
e canFam3.chr35            26210831  64 +  26524999 I
e otoGar3.GL873550            87777   0 +  18854210 C

a score=63684.000000
s hg38.chr6_GL000254v2_alt   866058 6 +   4827813 tcccac
s panTro5.chr6             29828733 6 + 175400573 tcccac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063562 6 + 173848474 tCCCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869857 6 +   6154872 TCCCAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578678 6 + 122973662 tcccac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059918 6 + 172585720 tCCCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722760 6 - 170955103 tCCCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768179 6 -   2996164 tCCCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521821 6 +    766320 tCCCAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28978376 6 -  71996105 TCTCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154815 6 +    290775 tCCCAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2613244 6 -   3067355 tcccac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30051770 6 + 171630274 TCCCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           200252 6 -    242197 TCCCAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     193007 6 -   1771730 tcccac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     267978 6 -    457564 tcccac
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26210895 6 +  26524999 TCTCAC
i canFam3.chr35            I 64 C 0
e micMur3.chr6                82203 39 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            17560 473 +    102524 I
e proCoq1.NW_012152574v1     577140 49 +    730504 I
e otoGar3.GL873550            87777 0 +  18854210 C

a score=430364.000000
s hg38.chr6_GL000254v2_alt   866064 45 +   4827813 CCCTTTGCACTGGGCA-CTCTGCTAGCCGCACCGTTTGGCTCT----CGA
s panTro5.chr6             29828739 45 + 175400573 CCCTTTGCACTGGGCA-CTCTGCTAGTCCCACCGTTTGGCTCT----CGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063568 45 + 173848474 CCCTTTGCACTGGGCA-CTCTGCTAGTCCCACCGTTTGGCTCT----CGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869863 45 +   6154872 CCCTTTGCACTGGGCA-CTCTGCTAGTCGCACCGTTTGGCTCT----CGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578684 45 + 122973662 CCCTTTGCACCGGGCA-CTCTGCTAGTCCCAACGTTTGGCTCT----CGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059924 45 + 172585720 CCCTTTGCACTGGGCA-CTCTGCTAGTCCCACCATCTGGCTTG----AGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722766 45 - 170955103 CCCTTTGCACTGGGCA-CTCTGCTAGTCCCACCATCTGGCTTG----AGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768185 45 -   2996164 CCCTTTGCACTGGGTA-CTCTGCTAGTCCCACCATCTGGCTTG----AGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521827 45 +    766320 CCGTTTGTACTGGGCA-CTCTGCTAGTCCCACCATCTGGCTTG----AGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28978382 45 -  71996105 CCCTTTGCACTGGGCA-CTCTGCTAGTCCCACCATCTGGCTTG----AGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154821 45 +    290775 CCCTTTGTACTGGGCA-CTCTGCTAGTCCCACCATCTGGCTTG----AGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2613250 45 -   3067355 CCCTTTGCACTGGGCA-CTCTGCTAGTCCCACCATCTGGCTTG----AGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30051776 42 + 171630274 CCCTTTGCCCTGGGCA-CTCTGCTAGTCCCACCGTTTGGCTTG-------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           200258 42 -    242197 TCCTTTGCCCTGGGCA-CTCTGCTAGTCCCACCGTTTGGCGTG-------
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     193013 42 -   1771730 CCCTTTGCCCTGGGCA-CTCTGCTAGTCCCACCATTTGGCTTG-------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     267984 42 -    457564 CCCTTTGCCCTGGGCA-CTCTGCTAGTCCCACCATTTGGCTTG-------
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            87777 43 +  18854210 CCCTTTGTATGGGGCACCTCTGCTAGCCCTACCATTTGCTTGG-------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26210901 47 +  26524999 CACTGTCCCCAGAGGC-CTCTGCCAG--CCATCATTCAGCTGTTCCCCGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            18033 43 +    102524 CCCCAGGCATCAGGCGCCCCTGCCGG--CCACCCGTTACCCTT----GG-
i dasNov3.JH582591         I 473 C 0
e micMur3.chr6                82203 39 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e proCoq1.NW_012152574v1     577140 49 +    730504 I

a score=1375831.000000
s hg38.chr6_GL000254v2_alt   866109 112 +   4827813 CTCCTGCACTCCTGCTAGC--AG--AGTGTCTGGCTTACCTTTGGCCACAGTAGAACTTTTCACCCTTTGTTTATAATTTACAGCCCACTT-AAGTGCAATG----CAAGTTTGAGATGAT
s panTro5.chr6             29828784 110 + 175400573 CTCCCGCACTCCTGCTAGC------AGTGTCTGGCTCACCTTTGGCCACAGTAGAACTTTTCACCCTTTGTTTATAATTTACAGCCCACTT-AAGTGCAATG----CAAGTTTGAGATGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063613 110 + 173848474 CTCCCGCACTCCTGCTAGC------AGTGTCTGGCTCACCTTTGGCCACAGTAGAACTTTTCACCCTTTGTTTATAATTTACAGCCCACTT-AAGTGCAATG----CAAGTTTGAGATGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5869908 112 +   6154872 CTCCTGCACTCCTGCTAGC--AG--AGTGTCTGGCTCACCTTTGGCCCCAGTAGAACTTTTCACCCTTTGTTTATAATTTACAGCCCACTT-AAGTGCAATG----CAAGTTTGAGATGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578729 112 + 122973662 CTCCTGCACTCCTGCTAGC--AG--AGTGTCTGGCTCACCTTTGGCCACAGTGGAACTTTTCACCCTTTGTTTATAATTTACAGTCCACTT-AAGTGCAATG----CAAGCTTGAGATGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30059969 110 + 172585720 CTCCCGCACTCCTGCTAGC------AGTGTCTGGCTCACCTTTGACCCCAGTAGAACTGTTCACCCTTTGTTTATAATTTATAGCCCACCT-AAGTGCAATG----CAAGTTTGAGATGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722811 110 - 170955103 CTCCTGCACTCCTGCTAGC------AGTGTCTGGCTCACCTTTGACCCCAGTAGAACTGTTCACCCTTTGTTTATAATTTATAGCCCACCT-AAGTGCAATG----CAAGTTTGAGATGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768230 110 -   2996164 CTCCTGCACTCCTGCTAGC------AGTGTCTGGCTCACCTTTGACCCCAGTAGAACTGTTCACCCTTTGTTTATAATTTATAGCCCACCT-AAGTGCAATG----CAAGTTTGAGATGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521872 110 +    766320 CTCCTGCACTCCTGCTAGC------AGTGTCTGGCTCACCTTTGGCCCCAGTAGAACTGTTCACCCTTTGTTTATAATTTATAGCCCACCT-AAGTGCAATC----CAAGTTTGAGATGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28978427 110 -  71996105 CTCCTGCACTCCTGCTAGC------AGTGTCTGGCTCACCTTTGGCCCCAGTAGAACTGTTCACCCTTTGTTTATAATTTATAGCCCATCT-AAGTGCAATG----CAAGTTTGAGATGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154866 110 +    290775 CTCCTGCACTCCTGCTAGC------AGTGTCTGGCTCACCTTTGGCCCCAGTAGAACTGTTCACCCTTTGTTTATAATTTATAGCCCACCT-AAGTGCAATC----CAAGTTTGAGATGAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2613295 112 -   3067355 CTCCTGCACTCCTGCTAGC--AG--AGTGTCTGGCTCACCTTTGGCCCCAATAGAACTGTTCACCCTTTGTTTATAATTTACAGCCCACCT-AAGTTCAATG----CAAGTTTGAGATGAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30051818 103 + 171630274 -------ACTCCTGCTAAC------AGTAACTGGCTCATCCTTGGCCATTGTAGAACTTTTCACCCTTTGTTCATGATTTACAGCCCACCT-AACTGCAATA----CAAATTTGAGATAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           200300 105 -    242197 -------ACTCCTGCTAAC--AG--AGTAACTGGCTCATGCTTGGCCATTGTAGAATTTTTCAGCCTTTGTTTATGATTTACAGCCCACCT-AAGTGCAATA----TAAGTTTGAGATAAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     193055 105 -   1771730 -------ACTCCTGCTAAC--AG--AGTAACTGGCTCATGCTTGGCCATTGCAGAACTTTTCATCCTTTGTTTATGATTTACAGCCCACCT-AAGTGCAATA----CAAGTTTGAGATGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     268026 105 -    457564 -------ACTCTTGCTAAC--AG--AGTAACTGGCTCATCCTTGGCCATTGTAGAACTTTTCACCCTTTGTTTATGATTTACAGCCCACCT-AAGTGCAATA----CAAGTTTGAGATGAT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                82242 109 + 123392446 CTCCTGCACTCCTGCTAGC--AA--AGTGCCTGGCTCACCCTGGGCCACAGTAGAG---CTGATCCTTTGTTTATAGCTTACATCCCACCT-AAGTGAGATG----CAAGTCTGAGGGGGT
i micMur3.chr6             I 39 C 0
s proCoq1.NW_012152574v1     577189 114 +    730504 CTCCTGCACTCCTGCTAGC--AAAGAGTGCCCGGCCCACCCTGGGCCACAGTAGAGCTTCTGACCCTTTGTTTACAGCTTACATCCCACCT-AAGTGAGATG----CCAGTCTCAGGGGGT
i proCoq1.NW_012152574v1   I 49 C 0
s otoGar3.GL873550            87820 100 +  18854210 TTTCGTCACTCTTGCAGTC--AAAGAGTGTCTGGCTCACCCTGGGCCACAGTGGAACTTCTGACCCTTTGT------------------CA-GGGTCAGAAGAGACCCTGTCTGAGATGCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26210948 104 +  26524999 ---------CTCTGCTTGCTCAG--GAAGTCTGGCTTGCCCTGGGTCACTGCAGCACTTCTGATTC--TGTTTGTTATTTACACCCCACCTAAAGTGCAAAT----AAAGTAGGAGGTGGT
i canFam3.chr35            C 0 I 246
s dasNov3.JH582591            18076 108 +    102524 CGCCTG-GCCCCCGCCAGC--AC--AGTGCCTGGCTCACCCTCG-CCACAGCACCACTTCTGAGCCTCCGTCTATAATTCACACCCCACCT-ATGTGCCAAG----AAAGT--GAGGTGGT
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57906564 5566 -  94987271 I

a score=284632.000000
s hg38.chr6_GL000254v2_alt   866221 18 +   4827813 AATTTGGGTCT-TTTAGGT
s panTro5.chr6             29828894 18 + 175400573 AATTTGGGTCT-TTTAGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063723 18 + 173848474 AATTTGGGTCT-TTTAGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870020 18 +   6154872 AATTTGGGTCT-TTTAGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578841 18 + 122973662 AATTTGGGTCT-TTTAGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060079 18 + 172585720 AATTTGGGTCT-TTTAGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722921 18 - 170955103 AATTTGGGTCT-TTTAGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768340 18 -   2996164 AATTTGGGTCT-TTCAGGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     521982 18 +    766320 AATTTGGGTCT-TTTAGGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28978537 18 -  71996105 AATTTGGGTCT-TTTAGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154976 18 +    290775 AATTTGGGTCT-TTTAGGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2613407 18 -   3067355 AATTTGGGTCT-TTTAGGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30051921 18 + 171630274 AATTTGGGTCT-TTTAGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           200405 18 -    242197 TATTGGGGTCT-TTTAGGT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     193160 18 -   1771730 AATTTGGGTCT-TTTAGGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     268131 18 -    457564 AATTTGGGTCT-TTTAGGT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                82351 18 + 123392446 AATGTGGGTCT-TTCGGGT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     577303 18 +    730504 AATTTGGGTCT-TTTAGGT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            87920 19 +  18854210 AACTTGGGTCTCTTTAGGT
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            18184 18 +    102524 AACTTGGGTCT-TTGGGGT
i dasNov3.JH582591         C 0 I 6
e mm10.chr17               57906564 5566 -  94987271 I
e canFam3.chr35            26211052 246 +  26524999 I

a score=95625.000000
s hg38.chr6_GL000254v2_alt   866239 6 +   4827813 TCTACC
s panTro5.chr6             29828912 6 + 175400573 TCTACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063741 6 + 173848474 TCTACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870038 6 +   6154872 TCTACC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578859 6 + 122973662 TCTACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060097 6 + 172585720 TCTACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722939 6 - 170955103 TCTACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768358 6 -   2996164 TCTACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522000 6 +    766320 TCTACC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28978555 6 -  71996105 TCTACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     154994 6 +    290775 TCTACC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2613425 6 -   3067355 TCTACC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30051939 6 + 171630274 TCTACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           200423 6 -    242197 TCTACC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     193178 6 -   1771730 TCTACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     268149 6 -    457564 TCTACC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                82369 6 + 123392446 TCTACC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     577321 6 +    730504 TCTACC
i proCoq1.NW_012152574v1   C 0 I 36
s otoGar3.GL873550            87939 6 +  18854210 TCTACT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            18202 6 +    102524 I
e canFam3.chr35            26211052 246 +  26524999 I

a score=73923.000000
s hg38.chr6_GL000254v2_alt   866245 8 +   4827813 CAGGGCTG
s panTro5.chr6             29828918 8 + 175400573 CAGGGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063747 8 + 173848474 CAGGGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870044 8 +   6154872 CAGGGCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578865 8 + 122973662 CAGGGCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060103 8 + 172585720 CATGGCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722945 8 - 170955103 CATGGCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768364 8 -   2996164 CATGGCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522006 8 +    766320 CATGGCTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28978561 8 -  71996105 CATGGCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155000 8 +    290775 CATGGCTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2613431 8 -   3067355 CATGACTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30051945 8 + 171630274 CAGGTCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           200429 8 -    242197 CAGGTCTG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     193184 8 -   1771730 CAGGTCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     268155 8 -    457564 CAGGTCTG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                82375 8 + 123392446 CAGGGCTG
i micMur3.chr6             C 0 I 8
s otoGar3.GL873550            87945 8 +  18854210 AGGGGCTG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            18202 6 +    102524 I
e proCoq1.NW_012152574v1     577327 36 +    730504 I
e canFam3.chr35            26211052 246 +  26524999 I

a score=221904.000000
s hg38.chr6_GL000254v2_alt   866253 22 +   4827813 --TTCT----ATAGCTCCTGCTACTGTT
s panTro5.chr6             29828926 22 + 175400573 --TTCT----ATAGCTCCTGCTACTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063755 22 + 173848474 --TTCT----ATAGCTCCTGCTACTGtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870052 22 +   6154872 --TTCT----ATAGCTCCTGCTACTGtt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578873 22 + 122973662 --TTCT----ATATCTCCTGCTGCTGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060111 22 + 172585720 --TTCT----ATAGGTTCTGCTACTGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722953 22 - 170955103 --TTCT----ATAGGTTCTGCTACTGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768372 22 -   2996164 --TTCT----ATAGGTTCTGCTACTGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522014 22 +    766320 --TTCT----ATAGCTCCTGCTACTGtt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28978569 22 -  71996105 --TTCT----ATAGCTCCTGCTACTGtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155008 22 +    290775 --TTCT----ATAGCTCCTGCTACTGtt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2613439 22 -   3067355 --TTCT----ACAGCTCCTGCTACTGtt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30051953 22 + 171630274 --CTCT----ATAGCGTCTGCTACTGtt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           200437 22 -    242197 --CTCT----ATAGCTTCTGCTACTGtt
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     193192 22 -   1771730 --CTCT----ATAGCTTCTGCTACTGGt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     268163 22 -    457564 --CTCT----ATAGCTTCTGCTACTGtt
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            87953 28 +  18854210 GAATATAGAGATAGTTCCAGCTGCTGTT
i otoGar3.GL873550         C 0 I 1
e micMur3.chr6                82383  8 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            18202  6 +    102524 I
e proCoq1.NW_012152574v1     577327 36 +    730504 I
e canFam3.chr35            26211052 246 +  26524999 I

a score=432521.000000
s hg38.chr6_GL000254v2_alt   866275 78 +   4827813 GTT--------TCttttttt--------------tttttctttttttttttttttgagac--agtctcactct-gtcgcccaggctggagtgcagtggcacaa
s panTro5.chr6             29828948 78 + 175400573 GTT--------TCttttttt--------------tttttttttttttttttttttgagac--agtctcactct-gtcgcccaggctggagtgcagtggcacaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063777 71 + 173848474 gtt--------tctttttt---------------------tctttctttttttttgagac--agtctcactct-gtcgcccaggctggagtgcagtggcacaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870074 72 +   6154872 gtt--------tcttttttt--------------------ttcttttttttttttgagac--agtctcactct-gtcgcccaggctggagtgcagtggcacaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578895 92 + 122973662 Gtt--------tctttttttttcttttcttttctttttcttttttttttttttttgagat--agtctcactct-gtcgcccaggctggagtgcactggcacaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060133 79 + 172585720 TCt--------tttctttct--------------ttt-tttttttttttttttttgagatggagtttcactct-gtcgcccaggctggagtacaatggcacaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29722975 80 - 170955103 TCT--------tttctttct--------------tttctttttttttttttttttgagatggagtttcactct-gtcgcccaggctggagtacaatggcacaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768394 74 -   2996164 TCt--------tttctttct--------------t---tttttttttttttttttgagatggag-ttcactct-gtcgccctg--tggagtacaatggcacaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522036 74 +    766320 tct--------tttcttt--------------------ctttcttttttttttttgagatggagtttcactct-gtcacccaggctggagtgcagtggcacaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28978591 84 -  71996105 tcttttctttctttctttc-------------------tttctttttttttttttgagatggaatttcactctcgtcgcccaggctggagtacagtggcacaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155030 75 +    290775 tct--------tttctttc-------------------tttctttttttttttttgagatggagtttcactct-gtcacccaggctggagagcagtggcacaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2613461 69 -   3067355 tct--------tc-------------------------tttttttttttttttttgagatggagtttcacttt-gttgcccaggctggagtgcagtggcacaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30051975 73 + 171630274 ttt--------tgtttttt-------------------tgtttttgtttttttttgagacggaggctcact---ttcacccaggctggagtgcagtggcgcaa
i calJac3.chr4             C 0 I 145
s saiBol1.JH378357           200459 70 -    242197 tt-----------tctttt-------------------cttttttttttttttttgagacagagtcttgct---gtcacacagcctggagtgcagtggtgcga
i saiBol1.JH378357         C 0 I 5
s cebCap1.NW_016107755v1     193214 66 -   1771730 tt-------------tttg-------------------ttttttgggttttttttgagac--agtcttgct---gtcacccagcctggagtgcaatggtacaa
i cebCap1.NW_016107755v1   C 0 I 5
s aotNan1.NW_018509740v1     268185 72 -    457564 tt---------tttttttg-------------------tttgttggtttgtttttgagacggagtcttgct---gtcaaccagcctggagtgcagtggcgcaa
i aotNan1.NW_018509740v1   C 0 I 5
e micMur3.chr6                82383  8 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            18202  6 +    102524 I
e proCoq1.NW_012152574v1     577327 36 +    730504 I
e canFam3.chr35            26211052 246 +  26524999 I
e otoGar3.GL873550            87981  1 +  18854210 I

a score=352661.000000
s hg38.chr6_GL000254v2_alt   866353 39 +   4827813 actcactgcaaccttcatctcctgggttcaagcaattat
s panTro5.chr6             29829026 39 + 175400573 actcactgcaacctccatctcctgggttcaagcaattat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063848 39 + 173848474 actcactgcaacctccatctcctgggttcaagcaattat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870146 39 +   6154872 actcactgcaacctccatctcctgggttcaagcaattat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74578987 39 + 122973662 actcactgcaacttccatctcctgggttcaagcaattat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060212 39 + 172585720 actcactgcaacctctgtctcctgggttcaagcaattat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723055 39 - 170955103 actcactgcaacctctgtctcctgggttcaagcaattat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768468 38 -   2996164 actcactgcaa-ctctgtctcctgggttcaagcaattat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522110 39 +    766320 actcactgcaacctctgtctcctgggttcaagcaattat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28978675 39 -  71996105 actcactgcaacctctgtctcctgggttcaagcaattgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155105 39 +    290775 actcactgcaacctctgtctcctgggttcaagcaattat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2613530 39 -   3067355 actcactgcaatctctgtctcctgggttcaagcaattat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30052193 38 + 171630274 gctcactgcaacctccacct-ccaggttcaagagattct
i calJac3.chr4             I 145 I 2
s saiBol1.JH378357           200534 39 -    242197 gttcactacaacctccacctcccaagttcaagcaattct
i saiBol1.JH378357         I 5 C 0
s cebCap1.NW_016107755v1     193285 39 -   1771730 gttcactacaacctccacctcctgagttcaagcaattct
i cebCap1.NW_016107755v1   I 5 C 0
s aotNan1.NW_018509740v1     268262 39 -    457564 gttcactacaacctccacttcccaagttcaagcaattct
i aotNan1.NW_018509740v1   I 5 I 144
e micMur3.chr6                82383  8 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            18202  6 +    102524 I
e proCoq1.NW_012152574v1     577327 36 +    730504 I
e canFam3.chr35            26211052 246 +  26524999 I
e otoGar3.GL873550            87981  1 +  18854210 I

a score=467811.000000
s hg38.chr6_GL000254v2_alt   866392 52 +   4827813 ctgcctcagcctcccga-gtagctgagattacaggcacccaccatcacgccca
s panTro5.chr6             29829065 52 + 175400573 ctgcctcagcctcccga-gtagctgagattacaggcacccactaccacgccca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063887 52 + 173848474 ctgcctcagcctcccga-gtagctgagattacaggcacccactaccacgccca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870185 52 +   6154872 ctgcctcagcctcccga-gtagctgagattacaggcacccaccaccacgccca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579026 52 + 122973662 ctgcctcagcctcccga-gtagctgagattacaggcacccagcaccacgccca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060251 52 + 172585720 ctgcctcagcctccgga-gcagctgggattacaggcgcccaccatcatgccca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723094 52 - 170955103 ctgcctcagcctccgga-gcagctgggattacaggcgcccaccatcatgccca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768506 51 -   2996164 cagcctcagcctccggaggcagct-ggattacaggcg-ccaccatcatgccca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522149 52 +    766320 ctgcctcagcctctgga-gcagctgggattacaggcgcccaccatcatgccca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28978714 52 -  71996105 ctgcctcagactccgga-gcagctgggattacaggcgcccaccatcatgccca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155144 52 +    290775 ctgcctcagcctctgga-gcagctgggattacaggcgcccaccatcatgccca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2613569 52 -   3067355 ctgtctcagcctctgga-gcaactgggattacaggcgcccaccatcacaccca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30052233 52 + 171630274 ctgcctcagcctcctga-gtagctgggattacaggcacccaccactatgcccg
i calJac3.chr4             I 2 C 0
s saiBol1.JH378357           200573 52 -    242197 ctgccccagcctcctga-gtaactgagactacaggtgcccaccgccacaccca
i saiBol1.JH378357         C 0 I 148
s cebCap1.NW_016107755v1     193324 52 -   1771730 ctgccccagcctcctga-gtaactgagactacaggtgcccaccgccacaccca
i cebCap1.NW_016107755v1   C 0 I 144
s aotNan1.NW_018509740v1     268445 52 -    457564 ctgcctcagcctcctga-gtagctgggattacaggcacgcaccaccgtgctcg
i aotNan1.NW_018509740v1   I 144 C 0
e micMur3.chr6                82383  8 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            18202  6 +    102524 I
e proCoq1.NW_012152574v1     577327 36 +    730504 I
e canFam3.chr35            26211052 246 +  26524999 I
e otoGar3.GL873550            87981  1 +  18854210 I

a score=1294257.000000
s hg38.chr6_GL000254v2_alt   866444 135 +   4827813 gctaatttttgtatttttag-tagagacagggtttcgccatcttggccaggctggtcttgaactcctgacctc--gtgatccacccacctcagcctcccaaagtgctgggattacaggcgtgagccaccacacccagc
s panTro5.chr6             29829117 135 + 175400573 gctaatttttgtatttttag-tagagacagggttttgccatcttggccaggctggtcttgaactcctgacctc--gtgatccacccacctcagcctcccaaagtgctgggattacaggcgtgagccaccatgcccagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30063939 135 + 173848474 gctaatttttgtatttttag-tagagacagggttttgccatcttggccaggctggtcttgaactcctgacctc--gtgatccacccacctcagcctcccaaagtgctgggattacaggcgtgagccaccacgcccagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870237 135 +   6154872 gctaatttttgtatttttag-tagagacagggtttcgccatcttggccaggctggtcttgaactcctgacctc--gtgatccacccacctcagcctcccaaagtgctgggattacaggcgtgagccaccacacccagc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579078 135 + 122973662 gctaatttttgtacttttag-tagagacagggtttcgccatcttggccaggctgttcttgaactcctgacctc--atgatccacccacctcagcctcccaaaatgctgggattacaggcatgagccaccacgcccagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060303 135 + 172585720 gctaattcctgtatttttag-tagagacagggtttcaccatctcggccaggctggtcttgaactcctgacctc--gtgatccacccatctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723146 135 - 170955103 gctaattcctgtatttttag-tagagacagggtttcaccatctcggccaggctggtcttgaactcctgacctc--gtgatccacccatctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768557 137 -   2996164 gctaattcctgtatttttagttagagacagggtttcaccatctcggccaggctggtcttgaactcctgacctc-ggtgatccaaccatctcagcctcccaaagtgctgggattaacagtgtgagccactgcgcccagc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522201 135 +    766320 gctaatttctgtatttttag-tagagacagggtttcactatctcggccaggcttgtcttgaactcctgacctc--gtgatccacccatctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28978766 135 -  71996105 gctaatttctgtatttttag-tagagacagggtttcaccatctcggccaggctggtcttgaactcctgacctc--gtgatccacccatctcagcctcccaaagtgctgggattacaggcgtgagctaccgcgcccagc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155196 135 +    290775 gctaatttctgtatttttag-tagagacagggtttcactatctcggccaggcttgtcttgaactcctgacctc--gtgatccacccatctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2613621 135 -   3067355 gctaatttctgtatttttag-tagagacagggtttcaccatctcgaccaggctggtcttgaactcctgacctg--gtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30052285 135 + 171630274 gctcatttttgtatttttag-taaaaacagggttttgc--tgttagccaggctggtctcaaactcctgacctcaagtaatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccaccatgcccggc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           200773 135 -    242197 gctcatttttgtatttttag-taaaaacagggttttgc--tgttagccaggctggtctcgaactcctgacctcaagtaatctgcccacttcggcctcccaaagtgctgggattacaggcgtgagccaccatgcccggc
i saiBol1.JH378357         I 148 C 0
s cebCap1.NW_016107755v1     193520 135 -   1771730 gctcatttttatatttttag-taaaaacagggttttgc--tgttagccaggctgatgtcgaactcctgacctcaagtaatccgcccacctcggcctcccaaagggctgggattacaggcgtgagccaccatgcccggc
i cebCap1.NW_016107755v1   I 144 C 0
s aotNan1.NW_018509740v1     268497 135 -    457564 gctcatttttgtatttttag-taaaaacaaggttttgc--tgttagccaggctggtcttgaactcctgacctcaagtaatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccatgccgggc
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6                82383   8 + 123392446 I
e mm10.chr17               57906564 5566 -  94987271 I
e dasNov3.JH582591            18202   6 +    102524 I
e proCoq1.NW_012152574v1     577327  36 +    730504 I
e canFam3.chr35            26211052 246 +  26524999 I
e otoGar3.GL873550            87981   1 +  18854210 I

a score=157138.000000
s hg38.chr6_GL000254v2_alt   866579 14 +   4827813 cTCCTGCTGCTG-TT
s panTro5.chr6             29829252 14 + 175400573 cTCCTGCTGCTG-TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064074 14 + 173848474 cTCCTGCTGCTG-TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870372 14 +   6154872 cTCCTGCTGCTG-TT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579213 14 + 122973662 cTCCTGCTGCTG-TT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060438 14 + 172585720 cTCCTGCTGCTG-TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723281 14 - 170955103 cTCCTGCTGCTG-TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768694 14 -   2996164 cTCCTGCTGCTG-TT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522336 14 +    766320 cTCCTGCTGTTG-TT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28978901 14 -  71996105 cTCCTGCTGCTG-TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155331 14 +    290775 cTCCTGCTGTTG-TT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2613756 11 -   3067355 cTCCTGC---TG-TT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30052420 15 + 171630274 cTCCTGCTGCTGTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           200908 15 -    242197 cTCCTGCTGCTGTTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     193655 15 -   1771730 cTCCTGCTGCTGTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     268632 15 -    457564 cTCCTGCTGCTGTTT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                82391 14 + 123392446 CTCCAGCTGCAG-TT
i micMur3.chr6             I 8 C 0
s canFam3.chr35            26211298 14 +  26524999 CTCCTGCTGCCC-TT
i canFam3.chr35            I 246 C 0
s dasNov3.JH582591            18208 12 +    102524 CCCCTGCTGCTT---
i dasNov3.JH582591         I 6 C 0
e mm10.chr17               57906564 5566 -  94987271 I
e proCoq1.NW_012152574v1     577327 36 +    730504 I
e otoGar3.GL873550            87981  1 +  18854210 I

a score=58069.000000
s hg38.chr6_GL000254v2_alt   866593 5 +   4827813 -CTGAT
s panTro5.chr6             29829266 5 + 175400573 -CTGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064088 5 + 173848474 -CTGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870386 5 +   6154872 -CTGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579227 5 + 122973662 -CTGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060452 5 + 172585720 -CTGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723295 5 - 170955103 -CTGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768708 5 -   2996164 -CTGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522350 5 +    766320 -CTGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28978915 5 -  71996105 -CTGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155345 5 +    290775 -CTGAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2613767 5 -   3067355 -CTGAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30052435 5 + 171630274 -CTGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           200923 5 -    242197 -CTGAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     193670 5 -   1771730 -CTGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     268647 5 -    457564 -CTGAT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                82405 5 + 123392446 -CTGGA
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550            87982 5 +  18854210 -CTGAA
i otoGar3.GL873550         I 1 C 0
s canFam3.chr35            26211312 5 +  26524999 -CTGAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            18220 5 +    102524 CTCGA-
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57906564 5566 -  94987271 I
e proCoq1.NW_012152574v1     577327 36 +    730504 I

a score=751326.000000
s hg38.chr6_GL000254v2_alt   866598 46 +   4827813 GCCAACTATTCATTTTCCAAACTGCAGGCTTATCTACTCCATAGAC
s panTro5.chr6             29829271 46 + 175400573 GCCAACTATTCATTTTCCAAACTGCAGGCTTATCTACTCCATAGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064093 46 + 173848474 GCCAACTATTCATTTTCCAAACTGCAGGCTTATCTACTCCATAGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870391 46 +   6154872 GCCAACTATTCATTTTCCAAACTGCAGGCTTATCTACTCCACAGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579232 45 + 122973662 GCCAACTATTCATTTTCCACACTGCAGGCTTATCTACTCCATAGA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060457 46 + 172585720 GCCAACTATTCATTTTCCACACTGCAGGCTTATCTACTCCATTGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723300 46 - 170955103 GCCAACTATTCATTTTCCACACTGCAGGCTTATCTACTCCATTGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768713 46 -   2996164 GCCAACTATTCATTTTCCACACTGCAGGCTTATCTACTCCATTGGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522355 46 +    766320 GCCAACTATTCATTTTCCACACTGCAGGCTTATCTACTCCATTGGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28978920 46 -  71996105 GCCAACTATTCATTTTCCACACTGCAGGCTTATCTACTCCATTGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155350 46 +    290775 GCCAACTATTCATTTTCCACACTGCAGGCTTATCTACTCCATTGGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2613772 46 -   3067355 ACCAACTATTCATTTTCCACACTGCAGGCTTATCTACTCCATTGGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30052440 46 + 171630274 GCCAACTATTCATTTTCCACACTGCAGGCTTATCTACTCCATAGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           200928 46 -    242197 GCCAACTATTCATTTTCCACACTGCAGGCTTATCTACTCCATAGGC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     193675 46 -   1771730 GCCAACTATTCATTTTCCACACTGCAGGCTTATCTACTCCATAGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     268652 46 -    457564 GCCAACTATTCATTTTCCACACAGCAGGCTTATCTACTCCATAGGC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                82410 46 + 123392446 GCCAACTGTTCATTTTCCACGTTGCAGGCTTATCTACTGCATAGGC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     577363 46 +    730504 GCCAACTGTTCATTTTCCACGTTGCAGGCTTATCTACTGCATAGGC
i proCoq1.NW_012152574v1   I 36 C 0
s otoGar3.GL873550            87987 46 +  18854210 GCCAACTGTTCATTTTCCACATTGTAGGCTTATCTACTCCATAGGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26211317 46 +  26524999 GCCAAGTGTTCATTTTCCTCGTTGCAGGCTTCCCTATTCTGCAGGC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            18225 44 +    102524 GCCAGCTGCTCCTTTTCCCCACTGTGGCCTCATCTACTC--TAGGC
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57906564 5566 -  94987271 I

a score=2336682.000000
s hg38.chr6_GL000254v2_alt   866644 159 +   4827813 TTCTTCTCTTTTCCTAGCGGATATT-TCACTGTGGGAAGAAGAGAGACTCAAA--TTAAGTCCAACTGGTCCAAGGTGGATAATCACAGTGGAAAGTTTTTCAAGTACTGGTCTAAGATTCAACCAGCCCATGCTTTAGTGGAAGTTCAGAAATTGGCTCTT
s panTro5.chr6             29829317 159 + 175400573 TTCTTCTCTTTTCCTAGCGGATATT-TCACTGTGGGAAGAAGAAAGACTCAAA--TTAAGTCCAACCGGTCCAAGGTGGATAATCACAGTGGAAAGTTTTTCAAGTACTGGTCTAAGATTCAACCAGCCCATGCTTTAGTGGAAGTTCAGAAATTGGCTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064139 159 + 173848474 TTCTTCTCTTTTCCTAGCGGATATT-TCACTGTGGGAAGAAGAGAGACTCAAA--TTAAGTCCAACCGGTCCAAGGTGGATAATCACAGTGGAAAGTTTTTCAAGTACTGGTCTAAGATTCAACCAGCCCATGCTTTAGTGGAAGTTCAGAAATTGGCTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870437 159 +   6154872 TTCTTCTCTTTTCCTAGCGGATATT-TCACTGTGGGAAGAAGAGAGACTCAAA--TTAAGTCCAACTGGTCCAAGGTGGATAATCACAGTGGAAAGTTTTTCAAGTACTGGTCTAAGATTCAACCAGCCCATGCTTTAGTGGAAGTTCAGAAATTGGCTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579277 157 + 122973662 --CTTCTCTTTTCCTAGAGGATATT-TCACTGTGGGAAAAGGAGAGACTCAAA--TTAAGTCCAACTGGTCCAAGGTGGATAATCACAGTGGAAAGTTTTTCAAGTACTGGTCTAAGATTCAACCAGCCCATGCTTTAGTGGAAGTTCAGAAATTGGCTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060503 158 + 172585720 TTCTTCTCTTTTCCTAGAGGATATT-CCACTGTGGGAAGAAGAGAGACTCAAA--TTAAGTCCAACTGGTCCCAGGTGGATAATCACTGTGGAACGTTTTTCAAGTACTGGTCTAAGATTC-ACCACCTCATGCTTTAGTGGAAGTTCAGAAATTGGCACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723346 158 - 170955103 TTCTTCTCTTTTCCTAGAGGATATT-CCACTGTGGGAAGAAGAGAGACTCAAA--TTAAGTCCAACTGGTCCCAGGTGGATAATCACTGTGGAACGTTTTTCAAGTACTGGTCTAAGATTC-ACCACCTCATGCTTTAGTGGAAGTTCAGAAATTGGCACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768759 158 -   2996164 TTCTTCTCTTTTCCTAGAGGATATT-CCACTGTGGGAAGAAGAGAGACTCAAA--TTAAGTCCAACTGGTCCCAGGTGGATAATCACTGTGGAACGTTTTTCAAGTACTGGTCTAAGATTC-ACCACCTCATGCTTTAGTGGAAGTTCAGAAATTGGCACTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522401 158 +    766320 TTCTTCTCTTTTCCTAGAGGATATT-CCACTGTGGGAAGAAGAGAGACTCAAA--TTAAGTCCAACTGGTCCCAGGTGGATAATCACAGTGGAACGTTTTTCAAGTACTAGTCTAAGATTC-ACCACCCCATACTTTAGTGGAAGTTCAGAAATTGGCACTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28978966 158 -  71996105 TTCTTCTCTTTTCCTAGAGGATATT-CCACTGTGGGAAGAAGAGAGACTCAAA--TTAAGTCCAACTGGTCCCAGGTAGATAATCACAGTGGAACGTTTTTCAAGTACTGGTCTAAGATTC-ACCACCTCATGCTTTAGTGGAAGTTCAGAAATTGGCACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155396 158 +    290775 TTCTTCTCTTTTCCTAGAGGATATT-CCACTGTGGGAAGAAGAGAGACTCAAA--TTAAGTCCAACTGGTCCCAGGTGGATAATCACAGTGGAACGTTTTTCAAGTACTAGTCTAAGATTC-ACCACCCCATGCTTTAGTGGAAGTTCAGAAATTGGCACTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2613818 159 -   3067355 TTCTTCTCTTTTCCTAGAGGATATT-CCACTGTGGGAAGAAGAGAGACTCACA--TTAAGTCCAACTGGTCCCAGGTGGATAATCACAGTGGAACGTTTTTCAAGTACTGGTCTAAGATTCAATCAGCTCGTGCTTTAGTGGAAGTTCAGAAATTGGCACTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30052486 143 + 171630274 GTCTTCTCTTTTCTTAGAGAATACT-CCACTGTGGGAAGAAGAGAGACTCAAA--TTAAGTCCAACTGGTCCAAGGTGGATAATCACAGTGGAATGTTTTTCAAGTACTGGTCTAAGATTC----------------AGAGGAAGTTCAGAAATTGGTTCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           200974 157 -    242197 GTCTTCTCTTTTCTTAGAGAATACT-CCACTGTGGGAAGA----AGACTCAAATTTTAAGTCCAACTGGTCCACGGTGGATAATCACAGTGGAATGTTTTTCAAGTACTGGTCTAAGATTCAACCAGCCCTTGCTCTAGTGGAAGTTCAGAAATTGGTTCTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     193721 159 -   1771730 GTCTTCTCTTTTCTTAGAGAATATT-CCACTGTGGGAAGAAGAGAGACTCAAA--TTAAGTCCAACTGGTGCAAGATGGATAATCACAGTGGAATGTTTTTCAAGTACTGGTCTAAGATTCAACCAGCCCTTGCTCTAGTGGAAGTTCAGAAATTGGTTCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     268698 159 -    457564 GTCTTCTCTTTTCTTAGAGAATACT-CCACTGTGGGAAGAAGAGAGACTCAAA--TTAAGTCCAACTGGTCCAAGGTGGATAATCACAGTGGAATGTTTTTCAAGTACTGGTCTAAGATTCAACCAGCCCTTGCTCTAGTGGAAGTTCAGAAATTGGTTCTT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                82456 154 + 123392446 CTCTTCCCCTCTCCTTCAGAATATT-CCACCAAGGGAAGAAGGGAAACTC-------AAACCCAATTGGTGCAAGGAAGATAATCACAGTGGAATGTTTTTCAAGGGCTGGTCTGAGATTTAACCCACCCACGCTCTGGTGGAAGTTCAGAAATTGGCTCTT
i micMur3.chr6             C 0 I 1
s proCoq1.NW_012152574v1     577409 159 +    730504 TTCCTCCCCTCTCCTTCAGAATATT-CCACCAGGGGAAGACAGGAAACTCAAA--TTAAACCCAATTGGTCCAAGGCAGATAATCACAGAGGAATGTTTTTCAAGGGCTGGTCTAAGATTTAACCTATCCATGCTCTAGTGGAAGTTCAGAAATTGGCTCTT
i proCoq1.NW_012152574v1   C 0 I 1
s otoGar3.GL873550            88033 158 +  18854210 TCCTTCTCCTCTCCTTCAGAATATT-CCACGATGGGAAGAAGGGAAACTTGAA--TTAAATCTAATTGGTCAAAAGTAGATAATCACTGTGGAATGTTTTTCAAGGGCTGGTCTAAGATTTAGGCTACCCACACTCCAGTATAAGTTCAG-AATTGGCTTtt
i otoGar3.GL873550         C 0 I 1580
s mm10.chr17               57912130 127 -  94987271 tttgtttttTTACTCTGAGAATATC-CCACTACAGGGAAGAGGGGAACGCAAA--TTAAATCCAACTGGTCCAAAGTGGATAATCACTATGGGTTGTTTTCAAAGGA--GGTTTAAGATCTAACC------TGCCATA------------------------
i mm10.chr17               I 5566 C 0
s canFam3.chr35            26211363 142 +  26524999 TCCTTCCCATTTCCGTGAGAATGTG-CCACTGCAGGCAGA-GGGTGACTCACA--CTGAGCCCAGTTGGCCCTAGCTGAATAATCACAGTGTACTGGTTGTCAAGCCTTGGTCTGAG----------------CTCTCATGGAACTTCAGAAAATGGCTTCT
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            18269 158 +    102524 -TTCTCCCCTTTCCTTTAGGATATTATCTCTGTGGGAAGAGGGGAAACTCAG---CTAAACCCAACAGGTCCAAGGTGGATAACCACAGGGGAGTAGGTTTCAAGCTCTGGTCTAAGATTTAACCTACCCCTGCTCTCGTGGAGCTTCAGAAATCAGCTCTG
i dasNov3.JH582591         C 0 C 0

a score=700730.000000
s hg38.chr6_GL000254v2_alt   866803 53 +   4827813 -AACAGGTCAGTG-AATGACA-GGGCCCATCCAACCCTTGCAGCTGTCTTACAAAA
s panTro5.chr6             29829476 53 + 175400573 -AACAGGTTAATG-AATGACA-GGGCCCATCCAACCCTTGCAGCTGTCTTACAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064298 53 + 173848474 -AACAAGTTAATG-AATGACA-GGGCCCATCCAACCCTTGCAGCTGTCTTACAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870596 53 +   6154872 -AACAGGTCAATG-AATGACA-GGGCCCATCCAACCCTTGCAGCTGTCTTACAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579434 53 + 122973662 -AACAGGTCAATG-AATGACA-GGGCCCATCCAACCCTTGCAGCTCTCTTAGAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060661 53 + 172585720 -AACAGGTCAATG-AATGACA-GGGCCCATCCAACCCTTGCAGCTCTCTTACAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723504 53 - 170955103 -AACAGGTCAATG-AATGACA-GGGCCCATCCAACCCTTGCAGCTCTCTTACAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768917 53 -   2996164 -AACAGGTCAATG-AATGACA-GGGCCCATCCAACCCTTGCAGCTCTCTTACAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522559 53 +    766320 -AACAGGTCAATG-AATGACA-GGGCCCATCCAACCCTTGCAGCTGTCTTACAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28979124 53 -  71996105 -AACAGGGCAATG-AATGACA-GGGCCCATCCAACCCTTGCAGCTCTCTTACAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155554 53 +    290775 -AACAGGTCAATG-AATGACA-GGGCCCATCCAACCCTTGCAGCTGTCTTACAAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2613977 54 -   3067355 -AACTGGTCAATG-AATGACAGGGGCCCATCCAACCCTTGCAGCTCTCTTACAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30052629 50 + 171630274 -AATA-GTCAATG-AATGACA-GGGCCCATCCAACCCT--CAGCTCTTTTACAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           201131 50 -    242197 -AATA-GTCAATG-AATGACA-GGGCCCATCCAACCCT--CAGCTCTTTTACAAAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     193880 50 -   1771730 -AATA-GTCAATG-ACTGACA-GGGCCCATCCAACTCT--CAGTTCTTTTACAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     268857 50 -    457564 -AACA-GTCAATG-AATGACA-GGGCCCATCCAACCCT--CAGCTCTTTTACAAAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                82611 53 + 123392446 -AACAGGACAATG-GTTAACA-GGACCCGTCAAACCCTTGCAGCTCTTTTGCAAAA
i micMur3.chr6             I 1 C 0
s proCoq1.NW_012152574v1     577569 53 +    730504 -AACAGGACAATG-GATAACA-GGACCCAACAAACCCTTGCAGCTCTTTTGCAAAA
i proCoq1.NW_012152574v1   I 1 C 0
s mm10.chr17               57912257 51 -  94987271 -AACAGGACAGTGAAATGATA--GGCCCATCCAACCCTTGAAGCTTCCATGCAG--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26211506 53 +  26524999 -AACAGGATGATGAAATGACA-GGACCCACTCAACCCTT-CACCTCTTTTGCAAAA
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            18427 55 +    102524 AAACGGGATGATGGAACTATA-GGGTCCAATCAACCCAAAAGGCATTTTTGCAAAA
i dasNov3.JH582591         C 0 C 0
e otoGar3.GL873550            88191 1580 +  18854210 I

a score=210959.000000
s hg38.chr6_GL000254v2_alt   866856 16 +   4827813 ATCTGAGAATCACTTT
s panTro5.chr6             29829529 16 + 175400573 ATCTGAGAATCACTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064351 16 + 173848474 ATCTGAGAATCACTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870649 16 +   6154872 ATCTGAGAAACACTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579487 16 + 122973662 ATCTGAGAATCACTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060714 16 + 172585720 ATCTGAGAATCATTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723557 16 - 170955103 ATCTGAGAATCATTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768970 16 -   2996164 ATCTGAGAATCATTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522612 16 +    766320 ATCTGAGAATCATTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28979177 16 -  71996105 ATCTGAGAATCATTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155607 16 +    290775 ATCTGAGAATCATTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2614031 16 -   3067355 ATCTGAGAATCATTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30052679 16 + 171630274 ATCTGAGAATCACTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           201181 16 -    242197 ATCTGAGAATCACTTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     193930 16 -   1771730 ACCTGAGAATCACTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     268907 16 -    457564 ATTTGAGAATCACTTT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                82664 16 + 123392446 ATGTGAGAATCACTTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     577622 16 +    730504 ATGTGAGAATCTCTTT
i proCoq1.NW_012152574v1   C 0 I 462
s otoGar3.GL873550            89771  9 +  18854210 aaaaaaaaa-------
i otoGar3.GL873550         I 1580 C 0
s canFam3.chr35            26211559 16 +  26524999 ATATGAGAACGTCTTA
i canFam3.chr35            C 0 I 12
s dasNov3.JH582591            18482 16 +    102524 ATGTGAGAATTGCTTT
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57912308  0 -  94987271 C

a score=221358.000000
s hg38.chr6_GL000254v2_alt   866872 15 +   4827813 AAAAATCAGTGCCAA
s panTro5.chr6             29829545 15 + 175400573 AAAAATCAGTGCCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064367 15 + 173848474 AAAAAGCAGTGCCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870665 15 +   6154872 AAAAATCAGTGCCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579503 15 + 122973662 AAAAATCAGCGCCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060730 15 + 172585720 AAAAATCAGTGCCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723573 15 - 170955103 AAAAATCAGTGCCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2768986 15 -   2996164 AAAAATCAGTGCCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522628 15 +    766320 AAAAATCAGTGCCAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28979193 15 -  71996105 AAAAATCAGTGCCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155623 15 +    290775 AAAAATCAGTGCCAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2614047 15 -   3067355 AAAAATCAGTGCCAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30052695 15 + 171630274 AAAAATCAGTGCCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           201197 15 -    242197 AAAAATCAGTGCCAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     193946 15 -   1771730 AAAAATCAGTGCCAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     268923 15 -    457564 AAAAATCAGTGCCAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                82680 15 + 123392446 AAAAATCAGAGCCAA
i micMur3.chr6             C 0 I 429
s otoGar3.GL873550            89780 15 +  18854210 aaaaaTCAGCGCCAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57912308  3 -  94987271 ------------CAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26211587 15 +  26524999 AAAAACCGGGGCTGA
i canFam3.chr35            I 12 C 0
s dasNov3.JH582591            18498 14 +    102524 -AAAAATGATGCCAT
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     577638 462 +    730504 I

a score=450986.000000
s hg38.chr6_GL000254v2_alt   866887 41 +   4827813 AATAAA--AGAAAATTTGAGCTTCAAAAAAGCAC-TCTCCAAGA
s panTro5.chr6             29829560 41 + 175400573 AATAAA--AGAAAAATTGAGCTTCAAAAAAGCAC-TCTCCAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064382 41 + 173848474 AATAAA--AGAAAAGTTGAGCTTCAAAAAAGCAC-TCTCCAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870680 41 +   6154872 AATAAA--AGAAAATTTGAGCTTCAAAAAAGCAC-TCTCCAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579518 41 + 122973662 AGTAAA--AGAAAAGTTGAGCTTCAAAAAAGCAC-TCTTCAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060745 41 + 172585720 AGTAAA--AGAAAAGTTGAGCTTCAAAAAAGCAC-TCTCCAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723588 41 - 170955103 AGTAAA--AGAAAAGTTGAGCTTCAAAAAAGCAC-TCTCCAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2769001 41 -   2996164 AGTAAA--AGAAAAGTTGAGCTTCAAAAAAGCAC-TCTCCAAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522643 41 +    766320 AGTAAA--AGAAAAGTTGAGCTTCAAAAAAGCAC-TCTCCAAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28979208 41 -  71996105 AGTAAA--AGAAAAGTTGAGCTTCAAAAAAGCAC-TCTCCAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155638 41 +    290775 AGTAAA--AGAAAAGTTGAGCTTCAAAAAAGCAC-TCTCCAAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2614062 41 -   3067355 AGTAAA--AGAAAAGTTGAGCTTCAAAAAAGCAC-TCTCCAAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30052710 44 + 171630274 AGTAAAAGAGAAACGTTGAGCTACAGAAAAGCACTTCTCCTAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           201212 44 -    242197 AGTAAAAGAGAAAAGCTGAGCTTCAGAAAAGCACTTCTCCTAGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     193961 44 -   1771730 AGTAAAAGAGAAAAGCTGAGCTTCAGAAAAGCACTTCTCCTAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     268938 44 -    457564 AGTAAAAGAGAAAAGTTGAGCTTTAGAAAAGCACTTCTCCTAGA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            89795 42 +  18854210 AGTGAG--AGAAAATTTGAACTTTAACAAAGCACTTCTTTAAGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57912311 20 -  94987271 -------GAGGGAAG----------AAGAACCAC-CTT------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26211602 44 +  26524999 AGGGAAAGAGAGACGTGGAGCTGCAAAGAAACTCTTCTCTAAGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            18512 43 +    102524 AGGGAGAGAGAAAAGTTGAGCTTcaaaaacacac-ttctcagga
i dasNov3.JH582591         C 0 I 43
e micMur3.chr6                82695 429 + 123392446 I
e proCoq1.NW_012152574v1     577638 462 +    730504 I

a score=320840.000000
s hg38.chr6_GL000254v2_alt   866928 35 +   4827813 TGACAC-AAAAAATGTTTAAAGTCTCAGGCAAATGT
s panTro5.chr6             29829601 35 + 175400573 TGACAC-AAAAAATGTTTAAAGTCTCAGGCAAATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064423 35 + 173848474 TGACAC-AAAAAATGTTTAAAGTCTCAGGCAAATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870721 35 +   6154872 TGACAC-AAAAAATGTTTAAAGTCTCAGGCAAATGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579559 34 + 122973662 TGATAC--AAAAATGTTTAAAGTCTCAGGCAAGTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060786 36 + 172585720 CGACACAAAAAAATGTTTAAAGTCTCAGGCAAGTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723629 36 - 170955103 CGACACAAAAAAATGTTTAAAGTCTCAGGCAAGTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2769042 36 -   2996164 CGACACAAAAAAATGTTTAAAGTCTCAGGCAAGTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522684 36 +    766320 CGACACAAAAAAATGTTTAAAGTCTCAGGCAAGTGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28979249 36 -  71996105 CGACATAAAAAAATGTTTAAAGTCTCAGGCAAGTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155679 36 +    290775 CGACACAAAAAAATGTTTAAAGTCTCAGGCAAGTGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2614103 35 -   3067355 CGACAC-AAAAAATGTTTAAAGTCTCAGGCAAGTGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30052754 35 + 171630274 GGACAC-AAAAAAATTTTAAAGTCTCAGGCAAGTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           201256 35 -    242197 GGACAC-AAAAATTTTTTAAAGTCTCAGGCAAGTGT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     194005 35 -   1771730 GGACAC-AAAATTTTTTTTAAGTCTCAGGCAAGTGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     268982 35 -    457564 GAACAC-AAAAAAATTTTAAAGTCTCAGGCAAGTGT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            89837 36 +  18854210 CAACATGAAAAAATATAAAAGTTCCAGGGCAAATTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57912331 24 -  94987271 -------AAAGAATTACAAAAATTCCAAGTT-----
i mm10.chr17               C 0 C 0
s canFam3.chr35            26211646 28 +  26524999 GGACAC-GAAGAATTGTAAGA-------GCAATTCT
i canFam3.chr35            C 0 C 0
e micMur3.chr6                82695 429 + 123392446 I
e dasNov3.JH582591            18555 43 +    102524 I
e proCoq1.NW_012152574v1     577638 462 +    730504 I

a score=59162.000000
s hg38.chr6_GL000254v2_alt   866963 5 +   4827813 -TTTTG
s panTro5.chr6             29829636 5 + 175400573 -TTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064458 5 + 173848474 -TTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870756 5 +   6154872 -TTTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579593 5 + 122973662 -TTTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060822 5 + 172585720 -TTCGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723665 5 - 170955103 -TTCGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2769078 5 -   2996164 -TTCGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522720 5 +    766320 -TTTGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28979285 5 -  71996105 -TTCGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155715 5 +    290775 -TTTGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2614138 5 -   3067355 -TTTGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30052789 5 + 171630274 -TTTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           201291 5 -    242197 -TTTTG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     194040 5 -   1771730 -TTTTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     269017 5 -    457564 -TTTTG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                83124 5 + 123392446 -TTTTG
i micMur3.chr6             I 429 C 0
s proCoq1.NW_012152574v1     578100 5 +    730504 -TTTTG
i proCoq1.NW_012152574v1   I 462 C 0
s otoGar3.GL873550            89873 5 +  18854210 -TTTTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57912355 5 -  94987271 -TTCTC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26211674 6 +  26524999 CCTTGG
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            18555 43 +    102524 I

a score=1114770.000000
s hg38.chr6_GL000254v2_alt   866968 84 +   4827813 CCC--TTGTCCATTCAAGA---TTTTTTTTCAGTTTGATAGCAAATTA------TTTCCAAGATGCTCAGAGTTCC-TAA-ACAAAGATGTTTAAGG
s panTro5.chr6             29829641 84 + 175400573 CCC--TTGTCCATTCAAGA---TTTTTTTTCATTTTGATAGCAAATTA------TTTCCAAGATGCTCAGAGTTCC-TAA-ACAAAGATGTTTAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064463 84 + 173848474 CCC--TTGTCCATTCAAGA---TTTTTTTTCATTTTGATAGCAAATTA------TTTCCAAGATGCTCAGAGTTCC-TAA-ACAAAGATGTTTAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870761 84 +   6154872 CCC--TTGTCCATTCAAGA---TTTTTTTTCATTTTGATAGCAAATTA------TTTCTAAGATGCTCAGAGTTCC-TAA-ACAAAGATGTTTAAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579598 84 + 122973662 CCC--TTGTCCATTCAAGA---TTTTTTTTCATTTTGATAGCAAATTA------TTTCCAAGATGCTCAGAGTTCC-TAA-ACAAAGATGTTTAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060827 83 + 172585720 CCC--TTGTCCATTCAAAA----TTTTTTTCATTTTGATAGCAAATTA------TTTCCAAAATGCTCAGAGTTCC-TAG-ACAAAGATGTTTAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723670 83 - 170955103 CCC--TTGTCCATTCAAAA----TTTTTTTCATTTTGATAGCAAATTA------TTTCCAAAATGCTCAGAGTTCC-TAG-ACAAAGATGTTTAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2769083 83 -   2996164 CCC--TTGTCCATTCAAAA----TTTTTTTCATTTTGATAGCAAATTA------TTTCCAAAATGCTCAGAGTTCC-TAG-ACAAAGATGTTTAAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522725 83 +    766320 CCC--TTGTCCATTCAAAA----TTTTTTTCATTTTGATAGCAAATTA------TTTCCAAAATGCTGAGAGTTCC-TAG-ACAAAGATGTTTAAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28979290 83 -  71996105 CCC--TTGTCCATTCAAAA----TTTTTTTCATTTTGATAGCAAATTA------TTTCCAAAATGCTCAGAGTTCC-TAG-ACAAAGATGTTTAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155720 83 +    290775 CCC--TTGTCCATTCAAAA----TTTTTTTCATTTTGATAGCAAATTA------TTTCCAAAATGCTGAGAGTTCC-TAG-ACAAAGATGTTTAAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2614143 83 -   3067355 CCC--TTGCCCATTCAAAA----TTTTTTTCATTTCGATAGCAAATTA------TTTCCAAAATGCTCAGAGTTCC-TAG-ACAAAGATGTTTAAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30052794 87 + 171630274 CCC--TTGTCCATTCAAATATTTTTTTTTTCATTTTGATAGCAAATTC------TTTCCAACATGCTGAGAGTTCC-TAA-ACAAAGCTGTTTAAGG
i calJac3.chr4             C 0 I 305
s saiBol1.JH378357           201296 85 -    242197 CCC--TTGTCCATTCAAAAA--TTTTTCTTCATTTTGATAGCAAATTC------TTTCCAAGATGCTCAGAGTTCC-TAA-ACTAAGCTGTTTAAGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     194045 85 -   1771730 CCC--TTGTTCATTCAAAAA--TTTTTCTTCATTTTGATAGCAAATTA------TTTCCAAGATGCTCAGAGTTCC-TAA-ACAAAGCTGTTTAAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     269022 85 -    457564 CCC--TTGTCCATTCAAAAA--TTTTTCTTCATTTTGATAGCAAATTC------TTTCCAAGATGTTCAGAGTTCC-TAA-ACAAAGCTGTTTAAGG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                83129 85 + 123392446 CCC--TTGGCCATTCAAGA---CTTTCTTCTATTTTAATAGCAAATTC------TTTCCAAGATGCTCAGAGTTCCTTGG-ACAAAGATTTTAAAGG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     578105 85 +    730504 CCC--TTGGTCATTCAAAA---CTTTCTTCCATTTTAATAGCAAATTC------TTTCCAAGATGCTCAGAGTTCCTTGG-ACAAAGATTTTAAAGG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            89878 85 +  18854210 CCC--TTGGCCATTCAAAA---CTTTCTTCCATTTTAATAGCAAATTC------TTTCCAAGATGCTCAGAGTGCCTTAG-ATAAAGATTTTTAAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57912360 80 -  94987271 CTC--CAGGCTTTTCAAAC--------ATTCATCTTGATCAAAAATTC------TTCCCAAGATGCTCAGAGTTCCTTAG-AGAACGGTTTCCAAGT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26211680 75 +  26524999 CCTCATTGACCATTCAATA-----CCTTCCCCCCTGGCCAGCAGCCTC------CTGCCAAACTGCTCAGATCTCA-GAGTGCAGAG----------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            18598 74 +    102524 cct--gtgttcattcccag----atacctcc--tgagaaaacaaaaaaGGCACTTCTCCAAGAA-------------GAT-ACAAAGAATTACAAA-
i dasNov3.JH582591         I 43 C 0

a score=594367.000000
s hg38.chr6_GL000254v2_alt   867052 43 +   4827813 TTGGAAGCACTCA-GCAGCCATCT-----------CATCCATTACCTTCTAGCAG
s panTro5.chr6             29829725 43 + 175400573 TTGGAAGCACTCA-GCAGCCATCT-----------CATCCATTACCTTCTAGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064547 43 + 173848474 TTGGAAGCACTCA-GCAGCCATCT-----------CATCCATTACCTTCTAGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870845 43 +   6154872 TTGGAAGCACTCA-GCAGCCATCT-----------CATCCATTACCTTCTAGCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579682 43 + 122973662 TTGGAAGCACTCA-GCGGCCATCT-----------CATCCATTACCTTCTAGCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060910 43 + 172585720 TTGGAAGCACTCA-GTGGCCATCT-----------CATCCATTACCTTCCAGCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723753 43 - 170955103 TTGGAAGCACTCA-GTGGCCATCT-----------CATCCATTACCTTCCAGCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2769166 43 -   2996164 TTGGAAGCACTCA-GTGGCCATCT-----------CATCCATTACCTTCCAGCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522808 43 +    766320 TTGGAAGCACTCA-GTGGCCATCT-----------CATCCATTACCTTCCAGCAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28979373 43 -  71996105 TTGGAAGCACTCA-GTGGCCATCT-----------CATCCATTACCTTCCAGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155803 43 +    290775 TTGGAAGCACTCA-GTGGCCATCT-----------CATCCATTACCTTCCAGCAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2614226 43 -   3067355 TTGGAAGCACTCA-GTGGCCATCT-----------CATCCATTACCTTCCAGCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30053186 43 + 171630274 GTGGAAGCACTCA-GTAGCCATCT-----------CATCCATTACTGTCTAGCAG
i calJac3.chr4             I 305 C 0
s saiBol1.JH378357           201381 43 -    242197 GTGGAAGCACTCA-GTAGCCATCT-----------CATCCATTACTGTCTAGCAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     194130 43 -   1771730 GTGGAAGCACTCA-GTAGCCATCT-----------CATCCATTACTGTCTAGCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     269107 43 -    457564 GTGGAAGCACTCA-GTAGCCATCT-----------CATCCATTACTGTCTAGCAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                83214 43 + 123392446 TTGGAAGCACTCA-GGGGCCATCT-----------CTTCTACTGCCTTCCAGCAG
i micMur3.chr6             C 0 I 83
s proCoq1.NW_012152574v1     578190 42 +    730504 -TGGAAGCACTCA-GGAGCCATCT-----------CTTCTACTGCCTTCTAGCAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            89963 43 +  18854210 TTGGAAGCATTCG-GGGGCCATCT-----------CATGTACTGTCTTCTAGCAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57912440 29 -  94987271 TCTGAGGCGCTTA-----------------------TTCCAGAAC---CTGGCAC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26211755 37 +  26524999 --GGAAGCACTCA-GGG---CTCT-----------CTTCCACCATCCTC-AGCAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            18672 55 +    102524 TTACAAAAACCCAGGCAACTATTTACTCCTTTGGCCATTCAATATTTTCTATCtt
i dasNov3.JH582591         C 0 C 0

a score=312632.000000
s hg38.chr6_GL000254v2_alt   867095 26 +   4827813 TCATCATTCTTTT---A------CTCTTCTTAGTT
s panTro5.chr6             29829768 26 + 175400573 TCATCATTCTTTT---A------CTCTTCTTAGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064590 26 + 173848474 TCATCATTCTTTT---A------CTCTTCTTAGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870888 26 +   6154872 TCATCATTCTTTT---A------CTCTTCTTAGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579725 26 + 122973662 TCATGATTCTTTT---A------CTCTTCTTAGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060953 26 + 172585720 TCATCATTCTTTT---A------CTGTTCTTAGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723796 26 - 170955103 TCATCATTCTTTT---A------CTGTTCTTAGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2769209 32 -   2996164 TCATCATTCTTTT---CTTAGTTCTGTTCTTAGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522851 26 +    766320 TCATCATTCTTTT---A------CTGTTCTTAGTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28979416 26 -  71996105 TCATCATTCTTTT---A------CTGTTCTTAGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155846 26 +    290775 TCATCATTCTTTT---A------CTGTTCTTAGTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2614269 26 -   3067355 TCATCATTCTTTT---A------CTGTTCTTAGTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30053229 26 + 171630274 TCACCATTCTTTT---A------TTGTTCTTAGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           201424 26 -    242197 TCATCATTCTTTC---A------TTATTCTTAGTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     194173 26 -   1771730 TCATCATTCTTTC---A------TTGTTCTCAGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     269150 26 -    457564 TCATCATTCTTTT---A------TTGTTCTTAGTT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     578232 26 +    730504 GATTCATTCTTTT---G------TTGTTCTTACTT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            90006 26 +  18854210 GCCTCATTTTTTA---A------TTGTTCTTACTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57912469 29 -  94987271 TCATTGTTTGCTTGTGA------TTCTTCCTGTCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26211792 26 +  26524999 TAGCCATTTTCCT---G------AGGTTCTTGCTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            18727 26 +    102524 ttttttttttttt---t------tttttttttttt
i dasNov3.JH582591         C 0 I 139
e micMur3.chr6                83257 83 + 123392446 I

a score=231682.000000
s hg38.chr6_GL000254v2_alt   867121 17 +   4827813 CCTGGGAAGGAGCGTCC
s panTro5.chr6             29829794 17 + 175400573 CCTGGGAAGGAGCGTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064616 17 + 173848474 CCTGGGAAGGAGCGTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870914 17 +   6154872 CCTGGGAAGGAGCGTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579751 17 + 122973662 CCTGGGAAGAAGCGTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060979 17 + 172585720 CCTGGGAAGGAGCGTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723822 17 - 170955103 CCTGGGAAGGAGCGTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2769241 17 -   2996164 CCTGGGAAGGAGCGTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522877 17 +    766320 CCTGGGAAGGAGCGTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28979442 17 -  71996105 CCTGGGAAGGAGCATCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155872 17 +    290775 CCTGGGAAGGAGCGTCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2614295 17 -   3067355 CCTGGGAAGGAGCGTCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30053255 17 + 171630274 CCTGGGGAGGAGCGTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           201450 17 -    242197 CCTGGGGAGAAGCGTCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     194199 17 -   1771730 CCTGGGGAGGAGCGTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     269176 17 -    457564 CCTGGGGAGGAGTGTCC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     578258 17 +    730504 CCTGAGAAGGAGAGTCC
i proCoq1.NW_012152574v1   C 0 I 487
s otoGar3.GL873550            90032 14 +  18854210 CTCGAGA---AGAGTCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57912498 17 -  94987271 GATGAGGAGGAGACTCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26211818 17 +  26524999 CTTAGGAGGGAGGGTTC
i canFam3.chr35            C 0 C 0
e micMur3.chr6                83257 83 + 123392446 I
e dasNov3.JH582591            18753 139 +    102524 I

a score=428209.000000
s hg38.chr6_GL000254v2_alt   867138 44 +   4827813 CTAGAGGGGATGCTTAGGCACTTGCTCCAGGCTCCCAATACATG
s panTro5.chr6             29829811 44 + 175400573 CTAGAGGGGATGCTTAGGCACTTGCTCCAGGCTCCCAATACATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064633 44 + 173848474 CTAGAGGGGATGCTTAGGCACTTGCTCCAGGCTCCCAATACATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870931 44 +   6154872 CTAGAGGGGATGCTTAGGCACTTGCTCCAGGCTCCCAATACATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579768 44 + 122973662 CTAGAGGGGACGCTTAGGCACTTGTTCCAGGCTCCCAGTACATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30060996 44 + 172585720 CTAGAGGGGACGCTTAGGCACTTGCTCCAGGCTCCCAATTCATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723839 44 - 170955103 CTAGAGGGGACGCTTAGGCACTTGCTCCAGGCTCCCAATTCATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2769258 44 -   2996164 CTAGAGGGGACGCTTAGGCACTTGCTCCAGGCTCCCAATTCATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522894 44 +    766320 CTAGAGGGGACGCTTGGGCACTTGCTCCAGGCTCCCAATTCATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28979459 44 -  71996105 CTAGAGGGGACGCTTAGGCACTTGCTCCAGGCTCCCAATTCATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155889 44 +    290775 CTAGAGGGGACGCTTGGGCACTTGCTCCAGGCTCCCAATTCATG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2614312 44 -   3067355 CTAGAGGGGATGCTTAGGCACTTGCTCCAGGCTCCCAATTCATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30053272 41 + 171630274 TCACA---TCTGCTCAGGCACTTGCTCCAGACTCCCAATACATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           201467 41 -    242197 TCACG---TCTGCTCAGGCACTTGCTCCAGACTCCCAATACATG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     194216 41 -   1771730 TCACA---TCTGCTCAGGCACTTGCTCCAGACTACCAGTACATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     269193 41 -    457564 TCACA---TCTGCTCAGGCACTTGCTCCAAACTCCCAATACATG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            90046 41 +  18854210 TCACA---TCTGTTCAGCCATTTGCTCCAGGCTGCCAGTACATG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57912515 41 -  94987271 TCACA---TCTGCTCAGCCACCTACTCCAGGCTCCCAGAGCATG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26211835 34 +  26524999 CCCCA---TCTCATCAGCCAGAGGCTCCGGGCTCCCC-------
i canFam3.chr35            C 0 C 0
e micMur3.chr6                83257 83 + 123392446 I
e dasNov3.JH582591            18753 139 +    102524 I
e proCoq1.NW_012152574v1     578275 487 +    730504 I

a score=461166.000000
s hg38.chr6_GL000254v2_alt   867182 33 +   4827813 CCCACTACTGTCAAGGAACTCATTAAACAGCAG
s panTro5.chr6             29829855 33 + 175400573 CCCACTACTGTCAAGGAACTCATTAAACAGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064677 33 + 173848474 CCCACTACTGTCAAGGAACTCATTAAACAGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5870975 33 +   6154872 CCCACTACTGTCAAGGAACTCATTAAACAGCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579812 33 + 122973662 CCCACTACTGTCAAGGAACTCATTAAACAGCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30061040 33 + 172585720 CCCACTACTGTCAAGGTACTCATTAAACAGCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723883 33 - 170955103 CCCACTACTGTCGAGGTACTCATTAAACAGCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2769302 33 -   2996164 CCCACTACTGTCGAGGTACTCATTAAACAGCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522938 33 +    766320 CCCACTACTGTCGAGGAACTCATTAAACAGCAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28979503 33 -  71996105 CCCACTACTGTCAAGGAACTCATTAAACAGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155933 33 +    290775 CCCACTACTGTCGAGGAACTCATTAAACAGCAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2614356 33 -   3067355 CCCACTACTGTCGAGGAACTCATTAAGCAGCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30053313 33 + 171630274 CCCACTACCTTCAAGGAACTCATTAAACAGCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           201508 33 -    242197 CCCACTACCATCAAGGAACTCATTAAACAGCAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     194257 33 -   1771730 CCCACTACAGTCAAGGAACTCATTAAACAGCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     269234 33 -    457564 ACCACTACTGTCAAGGAACTCATTAAACAGCAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                83340 33 + 123392446 CCCACCACTGTCAGGGAACTCATTAAACAGCAG
i micMur3.chr6             I 83 I 325
s otoGar3.GL873550            90087 33 +  18854210 CCCACCACTGTCAGAGAACTCATTAAACAACAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57912556 33 -  94987271 CCCACCACTGCTGGGGAATCCAGGAGGCAACAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26211869 15 +  26524999 ------------------CTCAATCGACAGCAG
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            18753 139 +    102524 I
e proCoq1.NW_012152574v1     578275 487 +    730504 I

a score=508702.000000
s hg38.chr6_GL000254v2_alt   867215 49 +   4827813 GGACAGAGGctaaca-ttcacgcaac------atataccatggcccaagggccaac
s panTro5.chr6             29829888 49 + 175400573 GGACAGAGGctaaca-ttcacgcaac------atataccatggcctgatggccaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064710 49 + 173848474 GGACAGAGGctaaca-ttcacgcaac------atataccatggcctgatggccaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5871008 49 +   6154872 GGACAGAGGctaaca-ttcacgcaac------atataccatggcccgagggccaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579845 49 + 122973662 GGACAGAGGctaaca-ttcacacaac------atataccacggcccaagggccatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30061073 49 + 172585720 GGACAGAGGctaaca-ttcacgcaac------atataccatggcccaagggctatc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723916 49 - 170955103 GGACAGAGGctaaca-ttcacgcaac------atataccatggcccaagggctatc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2769335 49 -   2996164 GGACAGAGGctaaca-ttcacgcaac------atataccatggcccaagggctatc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     522971 49 +    766320 GGACAGAGGctaaca-ttcacgcaac------atataccatggcccaagggctatc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28979536 49 -  71996105 GGACAGAGGctaata-ttcacgcaac------atatatcatagcccaagggccatc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     155966 49 +    290775 GGACAGAGGctaaca-ttcacgcaac------atataccatggcccaagggctatc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2614389 49 -   3067355 GGACAGAGGctaaca-ttcatgcaac------atataccatggcccaagggccatc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30053346 49 + 171630274 GGACAGAGGctaaca-ttcacgcaac------atacaccatggcccaagagccagc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           201541 49 -    242197 GGACAGAGGctaaca-ttcacgccac------atacaccatggtccaagagccacc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     194290 49 -   1771730 GGACAGAGGCTAACA-TTCACGCCAC------ATACaccatggtccaagagccacc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     269267 49 -    457564 GGACAGGGGctaaca-ttcatgtaac------atacgccatggcccaagggccacc
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            90120 55 +  18854210 TGACC-AGGctaacatttcacccaacacattaatatgccacaggccgagcaccatt
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57912589 32 -  94987271 TAACAGAGGCTACTA-C--------C------ATGGACCA---------AGCAGAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26211884 47 +  26524999 TGACCATGGCTG-CA-TGGATG-AGC------ATGCTCCATGGGCTAAGGACCACA
i canFam3.chr35            C 0 C 0
e micMur3.chr6                83373 325 + 123392446 I
e dasNov3.JH582591            18753 139 +    102524 I
e proCoq1.NW_012152574v1     578275 487 +    730504 I

a score=674040.000000
s hg38.chr6_GL000254v2_alt   867264 67 +   4827813 ctaggcacc-------tgaatg--cacaatt-tataatagtctttgtacccaacctatggaggaatg---tattactgtt
s panTro5.chr6             29829937 66 + 175400573 ctaggcacc-------tgaatg--cacaatt-tat-atagtctttgtacccaacctatggaggaatg---tattactgtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064759 66 + 173848474 ctaggcacc-------tgaatg--cacaatt-tat-atagtctttgtacccaacctatggaggaatg---tattactgtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5871057 67 +   6154872 ctaggcacc-------tgaatg--cacaatt-tataatagtctttgtacccaacctatggaggaatg---tattactgtt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579894 66 + 122973662 ctaggcacc-------tgaatg--cacaatt-tat-atagtctttgtactcaacctatggaggaatg---tattactgtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30061122 69 + 172585720 ctaggcacc-------tgaatg--cacaatt-tat-atagtctttgtacccaacatatggaggaatgtattattattgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29723965 69 - 170955103 ctaggcacc-------tgaatg--cacaatt-tat-atagtctttgtacccaacatatggaggaatgtattattattgtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2769384 69 -   2996164 ctaggcacc-------tgaatg--cacaatt-tat-atagtctttgtacccaacatatggaggaatgtattattattgtt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     523020 68 +    766320 ctaggcacc-------tgaatg--cacaatg-tat-atagtctttgtacccaacatatggagaaatgta-tattattgtt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28979585 69 -  71996105 ctaggcacc-------tgaatg--cacaatt-tat-atagtctttgtacccaacatatggaggaatgtattattattttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     156015 68 +    290775 ctaggcacc-------tgaatg--cacaatg-tat-atagtatttgtacccaacatatggagaaatgta-tattattgtt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2614438 69 -   3067355 ctaggcacc-------tgaatg--tgcaatt-tat-atagtctttgtacccaacatatagaggaatgtattattattgtt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30053395 63 + 171630274 ctaggcacc-------tgaatg--cacagtg-tat-atagtctatgtacccaccctatggaggaatg---tattatt---
i calJac3.chr4             C 0 I 291
s saiBol1.JH378357           201590 68 -    242197 ctaggcacc-------tgaatgcacacagtt-tat-ctagtctttgtacccaccctatggaggaatg---tattattatt
i saiBol1.JH378357         C 0 I 304
s cebCap1.NW_016107755v1     194339 66 -   1771730 ctaggcacc-------tgaatg--cacagtt-tat-ctagtctttgtacccaccctatggaggaatg---tattattatt
i cebCap1.NW_016107755v1   C 0 I 358
s aotNan1.NW_018509740v1     269316 66 -    457564 ctaggcacc-------tgaatg--cacagtt-tat-ctagtctttgtacccaccctatggaggaatg---tattattatt
i aotNan1.NW_018509740v1   C 0 I 305
s otoGar3.GL873550            90175 69 +  18854210 ttaggtgcc-------caaatt--cataatc-cat-ctagtccttgtaccaactctatggagaaatgcattgctattgtt
i otoGar3.GL873550         C 0 I 15
s mm10.chr17               57912621 66 -  94987271 CCAGGCATT-------GGGATG--CATAATT-AGC-CTAGTTCTTGTGTGCACTCCACAGAGAAATG---AATCATCATT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26211931 60 +  26524999 CTGGACACCGTGCAGAGGACTG--CGTGGTGACGA-GCAGGATGTCTGCTGAGC-------AGGATG---TCT-------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            18892 57 +    102524 CCGAGCACC-------T-------CCAAGCT-CCT-CTAGTCCTAGCACCC--CCTACGGAGGGA-----CATCGTTGTC
i dasNov3.JH582591         I 139 C 0
e micMur3.chr6                83373 325 + 123392446 I
e proCoq1.NW_012152574v1     578275 487 +    730504 I

a score=445843.000000
s hg38.chr6_GL000254v2_alt   867331 40 +   4827813 attctcattt-tcat-aaatgagg---aca-tggggaatagagact-
s panTro5.chr6             29830003 40 + 175400573 attctcattt-tcat-aaatgagg---aca-tggggaatagagact-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064825 40 + 173848474 attctcattt-tcat-aaatgagg---aca-tggggaatagagact-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5871124 40 +   6154872 attctcattt-tcat-aaatgagg---aca-tggggaatagagact-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74579960 40 + 122973662 attcttattt-tcat-aaatgagg---ata-tggggaatagagact-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30061191 40 + 172585720 attctcactt-ttat-agatgagg---aca-tggggaatagagact-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29724034 40 - 170955103 attctcactt-ttat-agatgagg---aca-tggggaatagagact-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2769453 40 -   2996164 attctcactt-ttat-agatgagg---aca-tggggaatagagact-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     523088 40 +    766320 attctcactt-ttat-agatgagg---aca-tggggaatagagact-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28979654 40 -  71996105 attctcactt-ttat-agatgagg---aca-tggggaatagagact-
i chlSab2.chr17            C 0 I 275
s manLeu1.NW_012099233v1     156083 40 +    290775 attctcactt-ttat-agatgagg---aca-tggggaatagagact-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2614507 40 -   3067355 attctcattt-ttat-agatgagg---aca-tggggaatagagact-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30053749 40 + 171630274 attctcattt-tcat-aaatgagg---act-tggagagtagagact-
i calJac3.chr4             I 291 C 0
s saiBol1.JH378357           201962 40 -    242197 attctcattt-ttat-aaatgagg---aat-tggagagtagagact-
i saiBol1.JH378357         I 304 C 0
s cebCap1.NW_016107755v1     194763 40 -   1771730 attctcattt-tCAT-AAATGAGG---ACT-TGGAGAGTAGAGACT-
i cebCap1.NW_016107755v1   I 358 C 0
s aotNan1.NW_018509740v1     269687 40 -    457564 attctcattt-tcat-aaatgagg---act-tggagagtagagact-
i aotNan1.NW_018509740v1   I 305 C 0
s otoGar3.GL873550            90259 43 +  18854210 atttccactt-tcac-agatgaggccacca-cgaagaatagagatt-
i otoGar3.GL873550         I 15 C 0
s mm10.chr17               57912687 43 -  94987271 ATTGTTATCTATCATCAGATCATA---AAAGTGGAGAATAGGGATT-
i mm10.chr17               C 0 I 1
s canFam3.chr35            26211991 40 +  26524999 GCTGCCGCCG-TCAC-AAACGAGG---CCA-TGGAGAAGAGGGATC-
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            18949 38 +    102524 ATCACCACTA-TCGT-GACCC------TCA-CGGTCAAAAGAGCACA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                83373 325 + 123392446 I
e proCoq1.NW_012152574v1     578275 487 +    730504 I

a score=1894067.000000
s hg38.chr6_GL000254v2_alt   867371 159 +   4827813 aagaaaa-tgtttgcatgtggttggatctgataccctggca-gtctgactcca---gagcccacacttttaaccagtaGTGTCCTCACTCACTAATCTCAGACTTAATCATGTCCTGCTTCATTCTGCTAAGCCCTCAATGGATCAATAAAACACCTCTTTTCA
s panTro5.chr6             29830043 159 + 175400573 aagaaaa-tgtttgcatgtggttggatctgataccctggca-gtctgactcca---gagcccacacttttaaccagtaGTGTCCTCACTCACTAATCTCAGACTTAATCATGTCCTGCTTCATTCTGCTAAGCCCTCAATGGATCAATAAAACACCTCTTTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30064865 159 + 173848474 aagaaaa-tgtttgcatgtggttggatctgataccctggca-gtctgactcca---gagcccacacttttaaccagtaGTGTCCTCACTCACTAATCTCAGACTTAATCATGTCCTGCTTCATTCTGCTAAGCCCTCAATGGATCAATAAAACACCTCTTTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5871164 159 +   6154872 aagaaaa-tgtttgcatgtggttggatctgataccctggca-gtctgactcga---gagcccacacttttaaccagtaGTGTCCTCACTCACTAACCTCAGACTTAATCATGTCCTGCTTCATTCTGCTAAGCCCTCAATGGATCAATAAAACATCTCTTTTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74580000 155 + 122973662 aagaaaa-tgtttgcatgtggttggatctgataccctggca-gtctgactcca---gagcccacacttttaaccagtaGTGTC----CTCACTAATCTCAGACTTAATCATGTCCTGCTTCATTCTGCTGAGCCCTCAATGGATCAATAAAACACCTCTTTTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30061231 159 + 172585720 aagaaaa-tgtttgcatgtggttggatctgatgccctggca-gtctgactcca---gagcccacacttttaaccagtaGTGTCCTCACTCACTAATCTCAGACTTAATCATGTCCTGCTTTATTCCGCTAAGCCCTCAATGGATCAATAAAACACCTCTTTTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29724074 159 - 170955103 aagaaaa-tgtttgcatgtggttggatctgatgccctggca-gtctgactcca---gatcccacacttttaaccagtaGTGTCCTCACTCACTAATCTCAGACTTAATCATGTCCTGCTTTATTCTGCTAAGCCCTCAATGGATCAATAAAACACCTCTTTTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2769493 159 -   2996164 aagaaaa-tgtttgcatgtggttggatctgatgccctggca-gtctgactcca---gatcccacacttttaaccagtaGTGTCCTCACTCACTAATCTCAGACTTAATCATGTCCTGCTTTATTCTGCTAAGCCCTCAATGGATCAATAAAACACCTCTTTTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     523128 159 +    766320 aagaaaa-tgtttgcatgtggttggatctgatgccctggca-gtctgactcca---gagcccacacttttaaccagtaGTGTCCTCACTCACTAATCTCAGACTTAATCATGTCCTGCTTTATTCTGCTAAGCCCTCAATGGATCAATAAAACACCTCTTTTCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28979969 159 -  71996105 aagaaaa-tgtttgcatgtggttggatctgatgccctggca-gtctgactcca---gagcccacacttttaaccagtaGTGTCCTCACTCACTAATCTCAGACTTAATCATGTCCTGCTTTATTCTGCTAAGCCCTCAATGGATCAATAAAACACCTCTTTTCA
i chlSab2.chr17            I 275 C 0
s manLeu1.NW_012099233v1     156123 159 +    290775 aagaaaa-tgtttgcatgtggttggatctgatgccctggca-gtctgactcca---gagcccacacttttaaccagtaGTATCCTCACTCACTAATCTCAGACTTAATCATGTCCTGCTTTATTCTGCTAAGCCCTCAATGGATCAATAAAACACCTCTTTTCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2614547 159 -   3067355 aagaaaa-tgtttgcatgtggttggatctgatgccctggca-gtctgactcca---gagcccacacttttaaccaGTGGTGTCCTCACTCACTAATCTCAGACTTAATCATGTCCTGCTTTATTCTGCTAAGCCCTCAATGGATCAATAAAATATCTCTTTTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30053789 159 + 171630274 aagaaac-tttttgcatgtggttggatatgatgccctggca-gcctgacccca---gaacccacacttttaaccaTCAGTGTCCTCACTCACTAATCTCAGACTTAATCACGTCCTGCTTCATTCTGCTAAGCCTTCAATGGATCAATAAAACACCTCTTTTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           202002 160 -    242197 aagaaacgtttttgcacatgtttggatatgatgccctggca-gcctgactcca---gaacccacacttttaaccatcaGTGTCCTCAATCACTAATCTCAGACTTAAACACGTCCTGCTTCATTCTGCTAAGCCTTCAATGGATCAGTAAAACACCTCTTTTCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     194803 160 -   1771730 AAGAAACTTTTTTGCACGTGGTTggatatgatgccctggca-gcctgactcca---gaacccacacttttaaccaTCAGTGTTCTCACTCACTAATCTCAGACTTAATCACGTCCTGCTTCATTCTGCTAAGCCTTCAATGGATCAATAAAACACCTCTTTTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     269727 160 -    457564 aagaaacttttctgcacatggttggatatgatgccctggca-gcctgactcca---gaacccacacttttaaccaTCAATGTCCTCACTCACTAATCTCAGACTTAATCACATCCTGCTTCATTCTGCTAAGCCTTCAATGGATCAATAAAACACCTCTTTTCA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            90302 128 +  18854210 aaggaacttTTTTGCATGTGGTAGGATCTGATG--------------------------CCCATACTTTTAACCACTAATGTTATCACTCACTAATCTAAACCTTAATGCTGTCCCACTC----------AGCCCTCAATGGATCCATAAAACACCTCTTTCAG
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57912731 144 -  94987271 GGGAACA-TTTCTGCGTGTGGT----------------Gcaggcctgactcca---gagcccacacttttaaccactaatgccatCACTCACTAATCGAGCCCTTCATCTCATCCCGCTCTGCCCCACTAATCCCTGCATGGAACAATCACACAGCTCTTTGCA
i mm10.chr17               I 1 I 1
s canFam3.chr35            26212032 154 +  26524999 AGGAACT-TGTTCCCACACCACAGTGGTTGACGCTCCAGTC-ATCCAACACCACTTGAGCCCATACCTTGAAGCTCACATGCCATCACTCTCTTGTCTTAGCC--AAACCCATCCTGCTTTGCCCTGCATGGCCCTCAGTGGAGCCACGAGACACCTC------
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            18987 118 +    102524 TGGAGAA-CTTTTGCGCCTGGT--GGTCGGACTCCC--GCA-GGCTAGCTCCA---GAGCCCGCA-TTTCAGCCACTGCTGTCCTCGC-------------------------CTCGCCGCG-----------CCTCCCTGCCTCGATGAAGCACCTCCTTTGC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                83373 325 + 123392446 I
e proCoq1.NW_012152574v1     578275 487 +    730504 I

a score=469219.000000
s hg38.chr6_GL000254v2_alt   867530 38 +   4827813 CCCTCCGCTTTAATGCCTTTTCATGAA-------CTTGGAGTCCT
s panTro5.chr6             29830202 38 + 175400573 CCCTCCGCTTTAAGGCCTTTTCATGAA-------CTTGGAGTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30065024 38 + 173848474 CCCTCCGCTTTAAGGCCTTTTCATGAA-------CTTGGAGTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5871323 38 +   6154872 CCCTCCGTTTTAATGCCTTTTCATGAA-------CTTGGAGTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74580155 38 + 122973662 CCCTCCGCTTCAATGCCTTTTCATGAA-------CTTGGAGTCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30061390 38 + 172585720 CCCTCTGCTTCAATGCCTTTTCATGAA-------CTTGGAGTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29724233 38 - 170955103 CCCTCTGCTTCAATGCCTTTTCATGAA-------CTTGGAGTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2769652 38 -   2996164 CCCTCTGCTTCAATGCCTTTTCATGAA-------CTTGGAGTCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     523287 38 +    766320 CCCTCTGCTTCAGTGCCTTTTCATGAA-------CTTGGAGTCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28980128 38 -  71996105 CCCTCTGCTTCAATGCTTTTTCATGAA-------CTTGGAGTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     156282 38 +    290775 CCCTCTGCTTCAGTGCCTTTTCATGAA-------CTTGGAGTCCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2614706 38 -   3067355 CCCTCTGCTTCAAAGCCTTTTCATGAA-------CTTGGAGTCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30053948 37 + 171630274 CTGTCCGCTTCAATGCC-TTTCACAAA-------CTTGAAGTCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           202162 37 -    242197 CTGTCCGCTTCAATGCC-TTTCATGAA-------CTTGAAGTCCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     194963 37 -   1771730 CTGTCCGCTTCAATGCC-TTTCATGAC-------CTTGAAGTCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     269887 37 -    457564 CTGTCCACTTCAATGCC-TTTCACGAA-------CTTGAAGTCCT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                83698 38 + 123392446 CCCTCTGCTTTAATGCCTTTTCATTAA-------CCTGGAGccct
i micMur3.chr6             I 325 I 73
s otoGar3.GL873550            90431 38 +  18854210 TTCTCTGCTGTAATGCCTTTTCATTAA-------CCTAAAGCCAT
i otoGar3.GL873550         I 1 I 16
s mm10.chr17               57912876 45 -  94987271 CTCTCTGCTTCAAAGCCTTTTCATTAACTCCAATCTTGAGAGCCT
i mm10.chr17               I 1 C 0
s canFam3.chr35            26212186 27 +  26524999 -----------AGCGCCCTTTCACTAA-------CATGGAGAGCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            19105 35 +    102524 CCCACGGCTTCCAGGCCTTCTCCCGGC-------CCT---GCCCC
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     578275 487 +    730504 I

a score=307606.000000
s hg38.chr6_GL000254v2_alt   867568 24 +   4827813 CTGAG-C--CTCCCTTCTTGGATTGAA
s panTro5.chr6             29830240 24 + 175400573 CTGAG-C--CTCCCTTCTTGGATTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30065062 24 + 173848474 CTGAG-C--CTCCCTTCTTGGATTGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5871361 24 +   6154872 CTGAG-C--CTCCCTTCTTGGATTGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74580193 24 + 122973662 CTGAG-C--CTCCCTTCTTGGGTTGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30061428 24 + 172585720 CTGAG-C--CTTCCTTCTTGGATTGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29724271 24 - 170955103 CTGAG-C--CTTCCTTCTTGGATTGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2769690 24 -   2996164 CTGAG-C--CTTCCTTCTTGGATTGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     523325 24 +    766320 CTGAG-C--CTTCCTTCTTGGATTGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28980166 24 -  71996105 CTGAG-C--CTTCCTTCTTGGATTGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     156320 24 +    290775 CTGAG-C--CTTCCTTCTTGGATTGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2614744 24 -   3067355 CTGAG-C--CTTCCTTCTTGGATTGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30053985 24 + 171630274 CTGAG-C--CTCCCTCCTTGGATTGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           202199 24 -    242197 CTGAG-C--CTCCCTCCTTGGACTGAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     195000 24 -   1771730 CTGAG-C--CTCCCTCCTTGGATTGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     269924 24 -    457564 CTGAG-C--CTCTCTCCTTGGATTGAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            90485 24 +  18854210 CCCAG-C--CTCCCTCCTTAGATTGAA
i otoGar3.GL873550         I 16 C 0
s mm10.chr17               57912921 19 -  94987271 --GGG-CTTCTCGCTTCCTGGA-----
i mm10.chr17               C 0 C 0
s canFam3.chr35            26212213 24 +  26524999 CCAAG-C--CTCCCTCCTTGGACAGAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            19140 25 +    102524 CTGGGTC--CTGCCGGCTGAGGGCGCA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                83736 73 + 123392446 I
e proCoq1.NW_012152574v1     578275 487 +    730504 I

a score=510235.000000
s hg38.chr6_GL000254v2_alt   867592 36 +   4827813 GCCCATTCTGTTCACAG-GA-AGACTGCAAGGTGCCGA
s panTro5.chr6             29830264 36 + 175400573 GCCCATTCTGTTCACAG-GA-AGACTGCAAGGTGCCGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30065086 36 + 173848474 GCCCATTCTGTTCACAG-GA-AGACTGCAAGGTGCCGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5871385 36 +   6154872 GCCCATTCTGTTCACAG-GA-AGACTGCAAGGTGCCGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74580217 36 + 122973662 GCCAATTCTGTTCACAG-GA-AGAGTGCAAGGTGCTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30061452 36 + 172585720 GCCCATTCTGTTCACAG-GA-AGAGTGCAAGGTGCCGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29724295 36 - 170955103 GCCCATTCTGTTCACAG-GA-AGAGTGCAAGGTGCCGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2769714 36 -   2996164 GCCCATTCTGTTCACAG-GA-AGAGTGCAAGGTGCCGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     523349 36 +    766320 GCCCATTCTGTTCACAG-GA-AGAGTGCAAGGTGCTGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28980190 36 -  71996105 GCCCATTCTGTTCACAG-GA-AGAGTGCAAGGTGCCGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     156344 36 +    290775 GCCCATTCTGTTCACAG-GA-AGAGTGCAAGGTGCCGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2614768 36 -   3067355 GCCCATTCTGTTCACAG-GA-AGAGTGCAAGGTGCCGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30054009 36 + 171630274 GCCCATTCTGTTCACAG-GA-AGAGTGCGAGGTGCCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           202223 36 -    242197 GCCCATTCTGTTCACAG-GA-AGAGTGCGAGGTGCCGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     195024 36 -   1771730 GCCCATTCTGTTCACAG-GA-AGAGTGCGAGGTGCCGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     269948 36 -    457564 GCCCATTCTGTTCACAG-GA-AGAGTGCGAGGTGCCAA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     578762 37 +    730504 GCCCACTCTGTTCACAGTGA-GGAGGGCGAGGTGCTGA
i proCoq1.NW_012152574v1   I 487 C 0
s otoGar3.GL873550            90509 37 +  18854210 GCCCACTTTGTTTACAGTAA-GGAGGGAGAGGTGCTGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57912940 37 -  94987271 GCCCACTCAGTTCACAG-GACAGTGGATGAGGTGCTGA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26212237 35 +  26524999 GCCCAATGTGTTCACAG-TG-AGGG-ACGAGCCACTGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            19165 22 +    102524 GCCC------------G-GA-AGG--ACCAGGTGCCGA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                83736 73 + 123392446 I

a score=3685499.000000
s hg38.chr6_GL000254v2_alt   867628 229 +   4827813 GTCACACTGTTCACTGGTTTATTGA-GATTCGGGGAGATCCTT-CCCCAAGAGACACCACAGTGTGAAAGGGACACCACCTCCCACCCCATAGGTCCATCTGTCTATCCCAACAGTCAAGGGTGCCTTCCTTTGGTCAGGATTCTCATCAACTATCCACTGGAAGCAGCTCTCCAAACCTGCCCCCACTTATTTTTCCTTAATTCCCCTC---------------------AAAAAAACACA-----------------------------AAACAAAAGG
s panTro5.chr6             29830300 229 + 175400573 GTCACACTGTTCACTGGTTTATTGA-GATTCGGGGAGATCCTC-CCCCAAGAGACACCACAGTGTGAAAGGGACACCACCTCCCACCCCATAAGTCCATCTGTCTATCCCAACAGTCAAGGGTGCCTTCCTTTCGTCAGGATTCTCATCAACTATCCACTGGAAGCAGCTCTCCAAACCTGCCCCCACTTATTTTTCCTTACTTCCCCTC---------------------AAAAAAACACA-----------------------------AAACAAAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30065122 229 + 173848474 GTCACACTGTTCACTGGTTTATTGA-GATTCGGGGAGATCCTC-CCCCAAGAGACACCACAGTGTGAAAGGGACACCACCTCCCACCCCATAAGTCCATCTGTCTATCCCAACAGTCAAGGGTGCCTTCCTTTCGTCAGGATTCTCATCAACTATCCACTGGAAGCAGCTCTCCAAACCTGCCCCCACTTATTTTTCCTTACTTCCCCTC---------------------AAAAAAACACA-----------------------------AAACAAAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5871421 229 +   6154872 GTCACACTGTTCACTGGTTTATTGA-GATTCGGGGAGATCCTT-CCCCAAGAGACACCACAGTGTGAAAGGGACACCACCTCCCACCCCATAGGTCCATCTGTCTATCCCAACAGTCAAGGGTGCCTTCCTTTGGTCAGGATTCTCATCAACTATCCACTGGAAGCAGCTCTCCAAACCTGCCCCCACTTATTTTTCCTTAATTCCCCTC---------------------AAAAAAACACA-----------------------------AAACAAAAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74580253 229 + 122973662 GTCACACTGTTCACTGGTTTATTGA-GATTCGGGGAGATCCTT-CCCCAAGAGACACCACAGTGTGAAAGGGACACCACCTCCCACCCCATAGGTCCATCTGTCTATCCCAACAGTCAAGGGTGCCTTCCTTTGGTCAGGATTCTCATCAACTATCCACTGGAAGCAGCTCTCCAAACCTGCCCCCACTTATTTTTCCTTAATTCCCCTC---------------------AAAAAAACACA-----------------------------AAACAAAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30061488 231 + 172585720 GTCACACTGTTCACTGGTTTATTGA-GATTCGGGGAGATCCTT-CCCCAAGAGACACCACAGTGTGAAAGGGACGCCACCTCCTGCCCCGTAGGTCCATCTGTCTATCCCAACAGTCAAGGGTGCCTTCCTTTAGTCAGGATTCTCATCAACTATCCACTGGAAGCAGCCCTCCAAACCTGCCCCCACTGATTTTTCCTTAATTCCCCTC-----------------A--AAAAAAAACACA-----------------------------AAACAAAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29724331 232 - 170955103 GTCACACTGTTCACTGGTTTATTGA-GATTCGGGGAGATCCTT-CCCCAAGAGACACCACAGTGTGAAAGGGACGCCACCTCCTGCCCCGTAGGTCCATCTGTCTATCCCAACAGTCAAGGGTGCCTTCCTTTAGTCAGGATTCTCATCAACTATCCACTGGAAGCAGCCCTCCAAACCTGCCCCCACTGATTTTTCCTTAATTCCCCTC----------------AA--AAAAAAAACACA-----------------------------AAACAAAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2769750 232 -   2996164 GTCACACTGTTCACTGGTTTATTGA-GATTCGGGGAGATCCTT-CCCCAAGAGACACCACAGTGTGAAAGGGACGCCACCTCCTGCCCCGTAGGTCCCTCTGTCTATCCCAACAGTCAAGGGTGCCTTCCTTTAGTCAGGATTCTCATCAACTATCCACTGGAAGCAGCCCTCCAAACCTGCCCCCACTGATTTTTCCTTAATTCCCCTC----------------AA--AAAAAAAACACA-----------------------------AAACAAAAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     523385 230 +    766320 GTCACACTGTTCACTGGTTTATTGA-GATTCGGGGAGATCTTT-CCCCAAGAGACACCACAGTGTGAAAGGGACGCCACCTCCCGCCCCGTAGGTCCATCTGTCTATCCCAACAGTCAAGGGTGCCTTCCTTTAGTCAGAATTCTCATCAACTATCCACAGGAAGCAGCTCTCCAAACCTGCCCCCACTTATTTTTCCTTAATTCCCCTC--------------------AAAAAAAACACA-----------------------------AAACAAAAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28980226 230 -  71996105 GTCACACTGTTCACTGGTTTATTGA-GATTCGGGGAGATCCTT-CCCCAAGAGACACCACAGTGTGAAAGGGACGCCACCTCCCGCCCCGTAGGTCCATCTGTCTATCCCAACAGTCAAGGGTGCCTTCCTTTAGTCAGGATTCTCATCAACTATCCACTGGAAGCAGCTCTCCAAACCTGCCCCCACTTATTTTTCCTTAATTCCTCTC--------------------AAAAAAAACACA-----------------------------AAACAAAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     156380 230 +    290775 GTCACACTGTTCACTGGTTTATTGA-GATTCGGGGAGATCTTT-CCCCAAGAGACACCACAGTGTGAAAGGGACGCCACCTCCCGCCCCGTAGGTCCATCTGTCTATCCCAACAGTCAAGGGTGCCTTCCTTTAGTCAGAATTCTCATCAACTATCCACAGGAAGCAGCTCTCCAAACCTGCCCCCACTTATTTTTCCTTAATTCCCCTC--------------------AAAAAAAACACA-----------------------------AAACAAAAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2614804 235 -   3067355 GCCACACTGTTCACTGGTTTATTGA-GATTCGGGGAGATCCTT-CCCCAAGAGACACCACAGTGTGAAAGGGACGCCACCTCCCGCCCCGTAGGTCCATCTGTCTATCCCAACAGTCAAGGGTGCCTTCCTTTAGTCAGGATTCTCATCAACTATCCACTGGAAGCAGCTCTCCAAACCTGCCCCCACTTATTTTTCCTTAATTACCCTCAG--A-----------AA--AAAAAAACCACA-----------------------------AAACAAAAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30054045 234 + 171630274 GTCACACTGTTCACTGGTTTATTGA-GATTCGGGGAGATCCTT-CCCCAAGAGACACCACAGTGTGAAAGGGACGCCACCTCCCGCCCCATAGGTCCATCTGTCTATCCCAACAGTCAAGGGTGCCTTCCTTCGGTCAGGATTC---TCAACTATCCACTGGAAGCAGCTCTCCAAACCTGCCCCCATTTCTTTTTCCTTAATTCCCCTCAAAAA-----------AA--AAAAAAAACACA-----------------------------AAACAAAAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           202259 263 -    242197 GTCACACTGTTCACTGGTTTATTGA-GATTCGGGGAGATCCTT-CCCCAACAGACACCACAGTGTGAAAGGGACGCCACCTCCCGCCCCATAGGTCCATCTGTCTATCCCAACAGTCAAGGGTGCCTTCCTTTGGTCAGGATTC---TCAACTATCCACTGGAAGCAGCTCTCCAAACCTGCCCCCATTTCTTTTTCCTTAATTTCCCTCAAaca-----------ca--cacacacacacacacacacacacacacacacacatacacacacaAAAAAGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     195060 244 -   1771730 GTCACACTGTTCACTGGTTTATTGA-GATTCGGGAAGATTCTT-CCCCAAGAGACACCACAGTGTGAAAGGGACGCCACCTCCCGCCCCATAGGTCCATCTGTCTATCCCAACAGTCAAGGGTGCCTTCCTTTGGTCAGGATTC---TCAACTATCCACTGGAAGCAGCTCTCCAAACCTGCCCCCATTTCTTTTTCCTTAATTTCCCTCaaaaa-----------aa--aaaaaaaaaaaaaaaaaaCACA-------------------TAACAAAAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     269984 245 -    457564 GTCACACTGTTCACTGGTTTATTGA-GATTTGGGGAGATCCTT-CCCCAAGAGACACCACAGTGTGAAAGGGACGCCACTTCCCGCCCCATAGGTCCATCTGTCTATCCCAACAGTCAAGGGTGCCTTCCTTTGGTCAGGATTC---TCAACTATCCACTGGAAGCAGCTCTCCAAACCTG-CCCCATTTCTTTTTTCTTAATTCTCCTCaaaaa-----------aa--aaaaaaaaaaaaaaaaaaaaCACA-----------------TAACAAAAGG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                83809 226 + 123392446 GTCACGCTGTTCACTGGTTTATTGA-GCTTTGGGGAGATCCTT-CCCCAAGAGACACCACAGTGTGAAAGGGACGCCACCGTCCGCCCCATCGG-CCAAGTGTCCATCCCAGCAGTCAGGGGTGCCCT-CTTTGGTTGGGATTCTCACCAACTATCCACTGGAAGCAGCTCTCCAAACCTGCCCCCATTTCTTTTCCCTTAATTGCCCTC----------------------AAAAAACACA-----------------------------AAATGAAAAG
i micMur3.chr6             I 73 C 0
s proCoq1.NW_012152574v1     578799 227 +    730504 GTCACACTGTTCACTGGTTTATTGA-GCTTTGGGGAGGTCCTT-CCCCAAGAGACACCACAGTGTGAAAGGGACGCCACCGTCCGCCCCGTCGGTCCACCTGTCCATCCCAGCAGTCCCAGGTGCCCTCCTTTGGTCAGGAGTCTCACCAACGATCCACTGGAAGCAGATCTCCAAACCTGCCCCCATTTCTTTTCCCTTAATTCCCCTC----------------------AAAAAACACA-----------------------------AAATG-AAAG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            90546 218 +  18854210 GTCACACTGTTTACTGGTTTATTGA-GA-ATGGGGAGATTCTT-CCCCAAGAGACACCACAGTGTGAAAGGGACACCACCTTCCGCCCCAAAGGTCCATCTGTCCATCCCAAGAGTTAGGGGTGCCTTCCTTTGG---------TCACTAACTACCCACTGGAAGCAGTTCTCCAAACCTGCCCCCATTTCTTTTCCCTTAATTCCCCTG----------------------AAAAAACACA-----------------------------AAATGAAAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57912977 230 -  94987271 GTCACACTGTTAACTGCTTTATTGA-GATTCAGGGAGATCCTTCCCCCAAGAGACACCACAGTGTGAAAGGGATGCTGCCTCCCGCCCGGTCAGTCCATCTGTCCA----------------TGCCTTCATTTGATCA-AATGTGCACCCACTATCCACTGGAAACAGCCTCC--AACCTGTCCCCATTTCTTTTCCCCTTAGTTCTGAAAAATAATAATAATGACAA--CAAAGAAAAGAA-----------------------------AACCAAGATG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26212272 221 +  26524999 GTCACACTGTTCACTGGTTTATTGA-GACTAGGGGAGATCCCT-CCCCAAGAGACACCTCAATGCAAAGGGGATGCCACCTTCTGCCCTGGAGTTCCCTCCGTCCATGCCAGCAGTCGAGG-TGGCTTCCTGTGGTTAGGATTCTCACT-----TCTACTGGAAGCAGCTCCCCAAGCCTGCCCTCATTTCTTCT--CTTAACTCCCCCC---------------------AGAAAAACACA-----------------------------AAACCAAAGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            19187 210 +    102524 GTGACGCCGTTCACTGCTTTATTGAGGATTCGGGGAGATCCTT-CCCCAAG-GACACCACAGTGTG-AGGGGACGCTACCTTCCGCCCCACGGGTCCATCCGTCCACCCGAGCCGTCAGCGGGGCCGTCCCCCGGTCAGAAAGTGCACCTCCTGTCTGCGGGAAACAGCTCTCCAAACCTGCCCCCA---------------------------------------AAATAAAAAGCGCACA-----------------------------AAACCAAAGG
i dasNov3.JH582591         C 0 I 2003

a score=639637.000000
s hg38.chr6_GL000254v2_alt   867857 43 +   4827813 GAGCAGTCTTGGGAGAAGATGATTGTGAGTGTAGACTGAGGGT
s panTro5.chr6             29830529 43 + 175400573 GAGCAGTCTTGGGAGAAGATGATTGTGAGTGTAGACTGAGGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30065351 43 + 173848474 GAGCAGTCTTGGGAGAAGATGATTGTGAGTGTAGACTGAGGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5871650 43 +   6154872 GAGCAGTCTTGGGAGAAGATGATTGTGAGTATAGACTGAGGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74580482 43 + 122973662 GAGCAGTCTTGGGAGAAGATGATTGTGAGTGTAGACTGAGGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30061719 43 + 172585720 GAGCAGTCTTGAGAGAAGATGACTGTGAGTGTAGACTGAGGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29724563 43 - 170955103 GAGCAGTCTTGGGAGAAGATGACTGTGAGTGTAGACTGAGGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2769982 43 -   2996164 GAGCAGTCTTGGGAGAAGATGACTGTGAGTGTAGACTGAGGGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     523615 43 +    766320 GAGCAGTCTTGGGAGAAGATGATTATGAGTGTAGACTGAGGGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28980456 43 -  71996105 GAGCAGTCTTGGGAGAAGATGATTATGAGTGCAGACTGAGGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     156610 43 +    290775 GAGCAGTCTTGGGAGAAGATGATTATGAGTGTAGACTGAGGGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2615039 43 -   3067355 GAGCAGTCTTGGGAGAAGATGATTGTGAGTGTAGACTGAGGGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30054279 43 + 171630274 GAGCAGTCTTGGGAGAAGTTGATTGTGAGTGTGGACTGAGGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           202522 43 -    242197 GAACAGTCTTGGGAGAAGTCGACTGTGAGTGTGGACTGAGGGT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     195304 36 -   1771730 GAGCAGTCTTGGGAGAAGTTGATTGTGAG-------TGAGGGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     270229 43 -    457564 GAGCAGTCTTGGGAGAAGCTGATTGTGAGTGTGGACTGAGGGT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                84035 42 + 123392446 GAGCAATCTT-GGAGAGGATGACTGTGAGTGCGGACTGAGGGT
i micMur3.chr6             C 0 I 162
s proCoq1.NW_012152574v1     579026 43 +    730504 GAGCAATCTTGGGAGAGGATGACTGTGAGTGCAGACTGAGGGT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            90764 43 +  18854210 GAACAATCTTTGGGGAGGATGATTGTGAGTGTAGACTAAGGGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57913207 36 -  94987271 CAGTAGTTCTGAGAGA---TGATT----GTACAGACCCAAAGT
i mm10.chr17               C 0 I 2
s canFam3.chr35            26212493 39 +  26524999 AAGCAGTCCTGGGAAG----GAATGTGAATGTGGACCTAGGAT
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            19397 2003 +    102524 I

a score=1748564.000000
s hg38.chr6_GL000254v2_alt   867900 160 +   4827813 AGTACATGAATGCAATGGAGATGGGGGGAATCTGAGCAGAAATGGAGATTCTGTGACAAGGAGAGGGTGTGGATGGCCCCACCAAACATGAATTGGGGAAAAG--TGCATA--ACAATGTGCAGGGTAGGGTACATATGGCTCTGTCAGAAGAATAC--------------------------------------------------------------------CATGATT
s panTro5.chr6             29830572 160 + 175400573 AGTACATGAATGCAAGGGAGATGGGGGGAGTCTGAGCAGAAATGGAGATTCTGCGACAAGGAGAGGGTGTGGATGGCCCCACCAAACATGAATTGGGGAAAAG--TGCATA--ACAATGTGCAGGGTAGAGTACATATGGCTCTGTCAGAAGAATAC--------------------------------------------------------------------CATGATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30065394 160 + 173848474 AGTACATGAATGCAAGGGAGATGGGGGGAGTCTGAGCAGAAATGGAGATTCTGCGACAAGGAGAGGGTGTGGATGGCCCCACCAAACATGAATTGGGGAAAAG--TGCATA--ACAATGTGCAGGGTAGAGTACATATGGCTCTGTCAGAAGAATAC--------------------------------------------------------------------CACGATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5871693 159 +   6154872 AGTACATGAATGCAATGGAGATGGGGGGAGTCTGAGCAGAAATGGAGATTCTGTGACAAGGAGAGGGTGTGGACGGCCCCACCAAACATGAATTGGGGAAAAG--TGCATA--ACAATGTGCA-GGTAGGGTACTTATGGCTCTGTCAGAAGAATAC--------------------------------------------------------------------CATGATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74580525 159 + 122973662 GGTACATGAATGCAATGGAGAT-GGGGGAGTCTGGGCAGAAATGGAGATTCTGCGACGAGGAGAGGGTGTGGACGGCCCCACCAAACATGAATTGGGGAAAAG--TGCTTA--ACAATGTGCAGGGTAGGGTACATATGGCTCTGTCAGAAGAATAC--------------------------------------------------------------------CATGATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30061762 160 + 172585720 GGTACATGAATGCAATGGAGATGGGGGGAGTCTGAGCAGAAATGGAGATTCTGCGATGAGGAGAGGGTGTGGATGGCCCCACCAGACATGAATTGGGGAAAAG--TGCATA--ACAATGTGCAGGGTAGGGTGCATATGGCTCTGTTAGAAGAATAC--------------------------------------------------------------------CATGATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29724606 160 - 170955103 GGTACATGAATGCAATGGAGATGGGGGGAGTCTGAGCAGAAATGGAGATTCTGCGATGAGGAGAGGGTGTGGATGGCCCCACCAGACATGAATTGGGGAAAAG--TGCATA--ACAATGTGCAGGGTAGGGTGCATATGGCTCTGTTAGAAGAATAC--------------------------------------------------------------------CATGATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2770025 160 -   2996164 GGTACATGAATGCAATGGAGATGGGGGGAGTCTGAGCAGAAATGGAGATTCTGCGATGAGGAGAGGATGTGGATGGCCCCACCAGACATGAATTGGGGAAAAG--TGCATA--ACAATGTGCAGGGTAGGGTGCATATGGCTCTGTTAGAAGAATAC--------------------------------------------------------------------CATGATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     523658 160 +    766320 GGTACATGAATGCAATGGAGATGGGGGGAGTCTGAGCAGAAATGGAGATTCTGCGATGAGGAGAGGGTGTGGATGGCCCCACCAGACATGAATTGGGGAAAAG--TGCGTA--ACAATGTGCAGGGTAGGGTGCATATGGCTCTGTTAGAAGAATAC--------------------------------------------------------------------CATGATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28980499 160 -  71996105 GGTACATGAATGCAATGGAGATGGGGGTAGTCTGAGCAGAAATGGAGATTCTGCGATGAGGAGAGGGTGTGGATGGCCCCACCAGACATGAATTGGGGAAAAG--TGCATA--ACAATGTGCAGGGTAGGGTGCATATGGCTCTGTTAGAAGAATAT--------------------------------------------------------------------CATGATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     156653 160 +    290775 GGTACATGAATGCAATGGAGATGGGGGGAGTCTGAGCAGAAACGGAGATTCTGCGATGAGGAGAGGGTGTGGATGGCCCCACCAGACATGAATTGGGGAAAAG--TGCGTA--ACAATGTGCAGGGTAGGGTGCATATGGCTCTGTTAGAAGAATAC--------------------------------------------------------------------CATGATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2615082 160 -   3067355 GGTACATGAATGCAATGGAAAAGGGGGGAGTCTGAGCAGAAATGGAGATTCTGCGATGAGGAGAGGGTGTGGATGGCCCCACCAGACAAGAGTTGGGGAAAAG--TGCATA--ACAATGTGCAGGGTAGGGTGCATATGGCTCTGTTAGAAGAATAC--------------------------------------------------------------------CATGATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30054322 160 + 171630274 GGTACATGAATACAATGGAGATGGGGGAAATCGGAGCAGAAACAGAGAGGCTGCAATGAGGAAAGGGTATGGACATCCCCACCAAACACGAATTGGGAGAAAG--TGCATA--ACAATGTGCAGGGTAGGGTGCGTATAGCTCTGTTGGAAGAATAC--------------------------------------------------------------------CATGATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           202565 119 -    242197 AGTACATGAATACAATGGAGATGGGGGAAGTCGGAGCAGAAAC--AGAGGCTGCAATGAGTAGAGGGGAT-------------------------------------------ACAATGTGCAGGGTAGGGTGCGTATGGCTCTGTTGGAAGAATAC--------------------------------------------------------------------CATGATT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     195340 121 -   1771730 AGTACATGAATACAATGAAAATGGGGGAAGTCGGAGCAGAAACAGAGAGGCTGCAATGAGGAGAGGGGAT-------------------------------------------ACAATGTGCAGGGTAGGGTGCATATGGCTCTGTTGGAAGAATAC--------------------------------------------------------------------CATGATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     270272 160 -    457564 AGTACATGAATACAATGGAGATGGGGGAAGTCAGAGCAGAAACAGAGAGGCTGCAATGAGGAGAGGGTATGGACATCCCCACCAAACATGAATTGGGAGAAAG--TGCATA--ACAATGTGCAGGGTAGGGTGCATATGGCTCTGTTGGAAGAATAC--------------------------------------------------------------------CATGATC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     579069 157 +    730504 GGGACACGAGTG-GACAGAGAG--GGGGAGTCCGAGCAGAGACTGAGATTCTGTGAGGA-GGGAGGGCGCGCATGGCCCCGCCAAGCGTGAACGGGGGCAGAG--TGCATATGACACTGTGCAGGGC-GGGTGCACGTGGCTCTGCTGGAGGAATAT--------------------------------------------------------------------GGCGATT
i proCoq1.NW_012152574v1   C 0 I 9
s otoGar3.GL873550            90807 157 +  18854210 GATATATGAGTGCAATGGAGAA-CAGGGAGTTTGAGCAGAAACTGAGATTCTGTGAGGAGGGGAGGGTGTGGCT-GCCCCACCAAGCATGAACCGGGGAAAAG--TGCATA--ACAATGTGCAGGGT-GGGTGCATGTGGCTCTATTGGAGGAATAC--------------------------------------------------------------------AATGATT
i otoGar3.GL873550         C 0 I 9
s mm10.chr17               57913245 215 -  94987271 GACGCATGAG---AATAGA----GGGAACACTTGAGAGTAAACCTAAGGCC------AAGGAGAGGGTATGCATGG-CTCAGAAAACACGTACTGGGGAAGAGCCTGCTTA--ATCATGTGCATGTT-GGGTGCACATGCCTCTGCTGAAAGAAGACAGGACATCAGCTAggcagacaactgtaatcccaatactcagaaggctgagacaggaagcctgccctgacacgagt
i mm10.chr17               I 2 I 37
s canFam3.chr35            26212532 121 +  26524999 ---ACATGAGCACAAAGTGG--GGGCGGAGCTCAAGCAGAAAC--------------CAGGTGAGGGTGT-------------------GAATCCAAGGAAAG--TTCATA--ACAAGGTGCAGAGT-GGGTGCCTGCAGCTGTTTTGGGAGAATAG--------------------------------------------------------------------GACGATG
i canFam3.chr35            C 0 C 0
e micMur3.chr6                84077 162 + 123392446 I
e dasNov3.JH582591            19397 2003 +    102524 I

a score=1648201.000000
s hg38.chr6_GL000254v2_alt   868060 130 +   4827813 --------TAAGGGAAGAAAGTACACAAGGTACATGGAGGGTACACAGGGAAAGTACATGGATAAACATGGACGTGTGCAAATAGGAAAGACATGACTCAGCATGCTAGACAAATTGCACATGCCTACCCAAACACGC
s panTro5.chr6             29830732 130 + 175400573 --------TAAGGGAAGAAGGTACACAAGGTACATGGAGGGTACACAGGGAAAGTACATGGATAAACATGGACGTGTGCAAATAGGAAAGACATGACTCAGCATGCTAGACAAATTGCACATGCCTACCCAAACACGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30065554 130 + 173848474 --------TAAGGGAAGAAGGTACACAAGGTACATGGAGGGTACACAGGGAAAGTACATGGATAAACATGGACGTGTGCAAATAGGAAAGACATGACTCAGCATGCTAGACAAATTGCACATGCCTACCCAAACACGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5871852 130 +   6154872 --------TAAGGGAAGAAGGTACACAAGGTACATGGAGGGTACACAGGGAAAGTACATGGATAAACATGGACGTGTGCAAATAGGAAAGACATGACTCAGCATGCTAGACAAATTGCACATGCCTACCCAAACACGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74580684 130 + 122973662 --------TAAGGGAAGAAGGTACACAAGGTACATGGAGGTTACACAGGGAAAGTACATGGATAAACATGGATGTGTGCAAATAGGAAAGACATGACTCAGCATGCTAGACAAATCGCACATGCCTACCCAAACACGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30061922 120 + 172585720 --------TAAGGGAAGAAGGTACACAAGGTACATGGAGGGTACACAGGGAAAGTACATGGAT----------GTGTGCAAACAGGAAAGACACGACTCAGCATGCTAGACAAATTGCACATGCCTACCCAAACACGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29724766 120 - 170955103 --------TAAGGGAAGAAGGTACACAAGGTACATGGAGGGTACACAGGGAAAGTACATGGAT----------GTGTGCAAACAGGAAAGACACGACTCAGCATGCTAGACAAATTGCACATGCCTACCCAAACACGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2770185 120 -   2996164 --------TAAGGGAAGAAGGTACACAAGGTACATGGAGGGTACACAGGGAAAGTACATGGAT----------GTGTGCAAACAGGAAAGACACGACTCAGCATGCTAGACAAATTGCACATGCCTACCCAAACACGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     523818 119 +    766320 --------TAAGGGAAGAAAGTACACAAGGTACATGGAGGGTACA-AGGGAAAGTACATGGAT----------GTGTGCAAACAGGAAAGACATGACTCAGCATGCTAGACAAATTGCACATGCCTACCCAAACACGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28980659 120 -  71996105 --------TAAGGGAAGAAGGTACACAAGGTACATGGAGGGTACACAAGGAAAGTACATGGAT----------GTGTGCAAACAGGAAAGACACGACTCAGCATGCTAGACAAATTGCACATGCCTACCCAAACACGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     156813 119 +    290775 --------TAAGGGAAGAAAGTACACAAGGTACATGGAGGGTACA-AGGGAAAGTACATGGAT----------GTGTGCAAACAGGAAAGACATGACTCAGCATGCTAGACAAATTGCACATGCCTACCCAAACACGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2615242 120 -   3067355 --------TAAGGGAAGAAGGTACACAAGGTACATGGAGGGTACTCAGGGAAAGTACATGGAT----------GTGTGCAAACAGGAAAGACATGACTCAGCATGCTAGACAAATTGCACATGCCTACCCAAACACGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30054482 111 + 171630274 --------TAAGGAAAGAAGGTACACAAGGTACATGGAGGGTACACAGGGAA---------AT----------GTATGCAAATAGGAAAGACATGATTCAGCATGCTAGACAAATTGCACATGCCTACCCAAACACAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           202684 111 -    242197 --------TAAGGGAAGAAGGTACACAAGGTACATGGAGGGTACACAGGGAA---------AT----------GTGTGCAAACAGGAAAGACATGACTCAGCATGCTAAACAAATTGCACATGCCTACCCAAACACAC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     195461 109 -   1771730 --------TAAGAGAAGAAGGTACACAAGGTACGTGGAGGGTACACAGGGAA---------AT----------GTGTGCAAATAGGAAAGGCATGA--CAGCATGCTAGACAAATTGCACATGCCTACCCAAACACAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     270432 111 -    457564 --------TAAGGGAAGAAGGTACACAAGGTACATGGAGGGTACGCAGGGAA---------AT----------GTGTGCAAATAGGAGAGACATGACTCAGCATGCTAGACAAATTGCACATGCCTACCCAAACACAC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                84239 130 + 123392446 --------TAAGGAAAGAAGGTACACAAGGTACACTGAGGGTTCCCGGCGAAAACACACAGATAAGCACGGATGTGTGCAAGTAGGAGAGACCCGACTCAGCATGCTGGACAAATTGCACACGCCTGCCCACACACGC
i micMur3.chr6             I 162 I 476
s proCoq1.NW_012152574v1     579235 130 +    730504 --------AAAGGAAAGAAGGTACACAAGGTACATTGAGGGTACACAGGGAAAACACATGGATAAACATGGCTGTGTGCAAGTAGGAGAGACATGACTCAGCATGCTAGACGAATTGCACGCACCTACCCAGACACAC
i proCoq1.NW_012152574v1   I 9 C 0
s otoGar3.GL873550            90973 130 +  18854210 --------AAGGTGAAGAAGGTATGCAAAGTACATTGAGGGTATACAGGGAAAATACACAGATAAACATGGATGTGTGCAAGTAGTAAGGACATGACTCAGCATGCTAGACAAATTGCACACGCATACCCAAACACAC
i otoGar3.GL873550         I 9 C 0
s mm10.chr17               57913497 124 -  94987271 --------AATGCAAAGAAAAAATACACAATGCAAGGAGG-CACACAAGTAAA--ACATAGACAACCATGAC-ATATGCACATGAGGAAGACA--GCTTGGTGTGCTCAACACATCATGCACGCCTACCCAAGCACAC
i mm10.chr17               I 37 C 0
s canFam3.chr35            26212653 106 +  26524999 TTCCAATGCAAAGGGTGGGGGCACCCAGGTCGCATGAA---CACACAGCAAAAATGCAGGGACGCACATGGCTTTGCACCCATGGGGAACACCTGCCTCTGC-------------------------TCCAGGG----
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            19397 2003 +    102524 I

a score=4088428.000000
s hg38.chr6_GL000254v2_alt   868190 357 +   4827813 TCAAGG-GCAGACCCATGACCATGAGAGGGGCACACGTAGCTGTGAATGCA-GG--GCACCCGAGA--GCACATGTGACTG-AACATGAAGAAAGCATACGGGAAA-AGCGTGTGTACACATGAGCATGTTCAGTGGGCACACGCAGGAGAGGGGAGGAT---GCATGTGTGCTGAGCG-TGAGTGCAC----AGAGCAGAGGCAAGGAGCAT-GTGAGCCTTGGCGAAAAGAATGAGCTCCCAAAGGAAGCAAAATTCAGGGGGA-------GCCACATGTGAGAAAGTATAGAAGGGCAAGTAAGATGGAAAGAGATTATGACAGTGGAGAAAAGGAGAG---GCCCCTTT-GGGGTGGAAAGAGCACTTGTTGGGAGACCCC
s panTro5.chr6             29830862 357 + 175400573 TCAAGG-GCAGACCCATGACCATGAGAGGGGCACACGTAGCTGTGAATGCA-GG--GCGCCCGAGA--GCACATGTGACTG-AACATGAAGAAAGCATATGGGAAA-AGCGCATGTACACATGAGCATGTTCAGTGGGCACACACAGGAGAGGGGAGGAT---GCATGTGTGCTGAGCG-TGAGTGCAC----AGAGCAGAGGCAAGGAGCAT-GTGAGCCTTGGCGAAAAGAATGAGCCCCCAAAGGAAGCAAAATTCAGGGGGA-------GCCACATGTGAGAAAGTATGGAAGGGCAAGTAAGATGGAAAGAGATTATGACAGTGGAGAAAAGGAGAG---GCCCCTTT-GGGGTGGAAAGAGCACTTGTGGGGAGACCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30065684 357 + 173848474 TCAAGG-GCAGACCCATGACCATGAGAGGGGCACACGTAGCTGTGAATGCA-GG--GCGCCCGAGA--GCACATGTGACTG-AACATGAAGAAAGCATATGGGAAA-AGCGCATGTACACATGAGCATGTTCAGTGGGCACACACAGGAGAGGGGAGGAT---GCATGTGTGCTGAGCG-TGAGTGAAC----AGAGCAGAGGCAAGGAGCAT-GTGAGCCTTGGCGAAAAGAATGAGCCCCCAAAGGAAGCAAAATTCAGGGGGA-------GCCACATGTGAGAAAGTATGGAAGGGCAAGTAAGATGGAAAGAGATTATGACAGTGGAGAAAAGGAGAG---GCCCCTTT-GGGGTGGAAAGAGCACTTGTGGGGAGACCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5871982 357 +   6154872 TCAAGG-GCAGACCCATGACCATGAGAGGGGCACACGTAGCTGTGAATGCA-GG--GCGCCCGAGA--GTACATGTGACTG-AACATGAAGAAAGCATACGGGAAA-AGCGTGTGTACACATGAGCATGTTCAGTGGGCACACGCAGGAGAGGGGAGGAT---GCATGTGTGCTGAGCG-TGAGTGCAC----AGAGCAGAGGCAAGGAGCAT-GTGAGCCTTGGCGAAAAGAATGAGCCCCCAAAGGAAGCAAAATTCAGGGGGA-------GCCACATGTGAGAAAGTATGGAAGGGCAAGTAAGATGGAAAGAGATTATGACAGTGGAGAAAAGGAGAG---GCCCCTTT-GGGGTGGAAAGAGCACTTGTGGGGAGACCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74580814 356 + 122973662 TCAAGG-GCAGACCCATGACCATGAGAGGGGCACACGTAGCTGTGAATGCA-GG--GTGCCCAAGA--GCACCTGTGACTG-AACATGAAGAAAGCACATGGGAAA-AGCGTGTGTACACATAAGCATGTTCAGTGGGCACACGCAGGAGAGGGGAGGAT---GCATGTGTGCTGAGCA-TGAGTGCAC----AAAGCAGAGGCAAGGAGCAT-GTGAGCCTTGGCGAAAAGAATGAGC-CCCAAAGGAAGCAAAATTCAGGCGGA-------GCCAAATGTGAGAAAGTATGGAAGGGCAAGTAAGATGGAAAGAGATTATGACAGTGGAGAAAAGGAGAG---GCCCCTTT-GGGGTGGAAAGAGCACTTGTGGGGAGACCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30062042 358 + 172585720 TCGAGG-GCAGACCCATAACCGTGAGTGGGGCACACGTAGCTGTGAATGCA-GG--GCGCCTGAGA--GCACATGTGACTG-AACATGAAGAAAGCACATGGGAAA-AACGCG-GTGCACACGAGCATGTTCAGTGGGCACACGCAGGAGAGGGGAGGAT---GCATGTGTGCTgagca-tgagtgcac--aaagagcagaggcaaggagcat-gtgagcCTTGGTGAAAAGAATGAGCCCCCAAAGGAAGCAAAATTCAGGGGGA-------GACAAATGTGAGAAAGTGTGGAAGGGCAAGTAAGATAGAAAGAGATTATGACAGTGGAGAAAAGGAGAG---GCCCCTTT-GGGGTGGAAAGAGCACTTGTGGGGAGACCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29724886 358 - 170955103 TCGAGG-GCAGACCCATAACCGTGAGTGGGGCACACGTAGCTGTGAATGCA-GG--GCGCCTGAGA--GCACATGTGACTG-AACATGAAGAAAGCACATGGGAAA-AACGCG-GTGCACACGAGCATGTTCAGTGGGCACACGCAGGAGAGGGGAGGAT---GCATGTGTGCTGAGCA-TGAGTGCAC--AAAGAGCAGAGGCAAGGAGCAT-GTGAGCCTTGGTGAAAAGAATGAGCCCCCAAAGGAAGCAAAATTCAGGGGGA-------GACAAATGTGAGAAAGTGTGGAAGGGCAAGTAAGATAGAAAGAGATTATGACAGTGGAGAAAAGGAGAG---GCCCCTTT-GGGGTGGAAAGAGCACTTGTGGGGAGACCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2770305 358 -   2996164 TCGAGG-GCAGACCCATAACCGTGAGTGGGGCACACGTAGCTGTGAATGCA-GG--GCGCCTGAGA--GCACATGTGACTG-AACATGAAGAAAGCACATGGGAAA-AACGCG-GTGCACACGAGCATGTTCAGTGGGCACACGCAGGAGAGGGGAGGAT---GCATGTGTGCTGAGCA-TGAGTGCAC--AAAGAGCAGAGGCAAGGAGCAT-GTGAGCCTTGGTGAAAAGAATGAGCCCCCAAAGGAAGCAAAATTCAGGGGGA-------GACAAATGTGAGAAAGTGTGGAAGGGCAAGTAAGATAGAAAGAGATTATGACAGTGGAGAAAAGGAGAG---GCCCCTTT-GGGGTGGAAAGAGCACTTGTGGGGAGACCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     523937 354 +    766320 TCAAGG-GCAGACCCATAACCGTGAGTGGGGCACACGTAGCTGTGAATGCA-GG--GCGCCTGAGA--GCACATGTGACTG-AACATGAAGAGAGCACATGGGAAA-AACGCG-GTGCACACGAGCATGTTCAGTGGGCACACGCAGGAGAGGGGAGGAT---GCATGTGTGCTGAGCG-TGAGTGCAC--AAAGAGCAGAGGCAAGGAGCAT-GTGAGCCTTGGCGAAAAGAATGAGCCCCCAAAGGAAGCAAAATTCAGGGGGA-------GACAAATGTGAGAAAGTGTGGAAGGGCAAGTAAGAT----AGAGACTATGACAGTGGAGAAAAGGAGAG---GCCGCTTT-GGGGTGGAAAGAGCACTTGTGGGGAGACCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28980779 358 -  71996105 TCAAGG-GCAGACCCATAACCGTGAGTGGGGCACACGTAGCTGTGAATGCA-GG--GTGCCTGAGA--GCACATGTGACTG-AACATGAAGAAAGCACACGGGAAA-AACGCG-GTGCACACGAGCATGTTCAGTGGGCACACGCAGGAGAGGGGAGGAT---GCATGTGTGCTGAGCA-TGAGTGCAC--AAAGAGCAGAGGCAAGGGGCAT-GTGAGCCTTGGCGAAAAGAATGAGCCCCCAAAGGAAGCAAAATTCAGGGGGA-------GACAAATGTGAGAAAGTGTGGAAGGGCAAGTAAGATAGAAAGAGATTATGACAGTGGAGAAAAGGAGAG---GCTCCTTT-GGGGTGGAAAGAGCACTTGTGGGGAGACCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     156932 354 +    290775 TCAAGG-GCAGACCCATAACCGTGAGTGGGGCACACGTAGCTGTGAATGCA-GG--GCGCCTGAGA--GCACATGTGACTG-AACATGAAGAGAGCACATGGGAAA-AACGCG-GTGCACACGAGCATGTTCAGTGGGCACACGCAGGAGAGGGGAGGAT---GCATGTGTGCTGAGCG-TGAGTGCAC--AAAGAGCAGAGGCAAGGAGCAT-GTGAGCCTTGGCGAAAAGAATGAGCCCCCAAAGGAAGCAAAATTCAGGGGGA-------GACAAATGTGAGAAAGTGTGGAAGGGCAAGTAAGAT----AGAGACTATGACAGTGGAGAAAAGGAGAG---GCCCCTTT-GGGGTGGAAAGAGCACTTGTGGGGAGACCTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2615362 358 -   3067355 TCAAGG-GCAGACCCATAACCGTGAGTGGGGCACACGTAGCTGTGAATGCA-GG--GTGCCTGAGA--GCACATGTGACTG-AACATGAAGAAAGCACATGAGAAA-AACGCA-GTGCACACGAGCGTGTTCAGTGGGCACACGCAGGAGAGGGGAGGAT---GCATGTGTGCTAAGCG-TGAGTGCAC--AAAGAGCAGAGGCAAGGAGCAT-GTGAGCCTTGGTGAAAAGAATGAGCCCCCAAAGGAAGTAAAATTCAGGGGGA-------GACAAATGTGAGAAAGTGTGGAAGGGCAAGTAAGATGGAAAGAGATTATGACAGTGGAGAAAAGGAGAG---GCCCCTTT-GGGGTGGAAAGAGCACTTGTGGGGAGACCTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30054593 361 + 171630274 TCAAAG-GCAGACCCATGACCATGACAGCGGCACACGTAGCTGTGAATGCA--G--GTTCCCAAGAGAGCATATGTGACTG-AACATGAAGAAAGCACATGGGAAA-AGCACACGTGCACATGAACATGTTCAATGGGCACACGCAGGAGAAGGGAGGAT---GCATGTGTGCTGAGCATTGAGTGCAC--AAAGAGCAGAGGCAAGGAGCAT-GGGAGCCTTGGCAAAAAGAATGAGCCCCCAAAGGAAGCAAAATTCAGGGGGA-------GCCAAACACGGGCAAGTGTGGAATGGCAAGTAAGATGAAAAGAGATTATGACAGTGGAGAAAATGAGAG---GCCCCTTT-GGGGTGGAAAGAGCACTTGTGGGGAGACCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           202795 343 -    242197 TCAAAG-GCAGACCCATGACCATGAGAGCGGCACACGTAGCTGTAAAT--------------------GTACATGTGACTG-AACATGAAGAAAGCACATGGGAAA-AGCACGCGTGCACATGAGCATGTTCAGTGGGCACACGCAGGGGAGGGAAGGAT---GCATGTGTGCTGAGCGTTGAGTGCAC--AAAGAGCAGAGGCAAGGAGCAT-GTGAGCCTTGGCGAAATGAATGAGCCCCCAAAGGAAGCAAAATTCACGGGGA-------GCCAAACACAGGAAAGTGTGGAATGGCAAGTAAGATGAAAAGAGAT--TGACAGAGGAGAAAAGGAGAG---GCCCCTTT-GGGGTGGAAAGAGCACTTGTGGGGAGACCCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     195570 345 -   1771730 TCAAAG-GCAGACCCATGACCATGAGAGCGGCACACGTAGCTGTGAAT--------------------GTACATGTGACTG-AACATGAAGAAAGCACATGGGAAA-AGCACGCGTGCACATGAGCATGTTCAGTAGGCACACGCAGGAGAGGGGAGGAT---GCATGAGTGTTGAGCGTTGAGTGCAC--AAAGAGCAGAGGCAAGGAGCAT-GTAAGCCTTGGTGAAAAGAATGAGCCCCCAAAGGAAGCAAAATTCACGGGGA-------GCCAAACACGGGAAAGTGTGGAATGGCAAGTAAGATGAAAAGAGATTATGACAGTGGAGAAAAGGAGAG---GCCCCTTT-GGGGTGGAAAGAGCACTTGTGGGGAGACCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     270543 363 -    457564 TCAAAG-GCAGACCCATGACCATGAGAGCGGCACACGTAGCTGTGAATGCA-GG--GTTCCCAAGAGAGCACATGTGACTG-AACGTGAAGAAAGCACATGGGAAA-AGCACACGTGCACATGAGCATGTTCAGTGGGCACACGCAGGAGAGGGGAGGAT---GCATGTGTGCTGAGCATTGAGTGCAC--AAAGAGCAGAGGCAAGGAGCATAGGAAACCTTGGCAAAAAGAATGAGCCCCCAAAGGAAGCAAAATTCACGGGGA-------GCCAAACACGAGAAAGTGTGGAATGGCAAGTAAGATGAAAAGAGATTATGACAGTGGAGAAAAGGAGAG---GCCTCTTT-GGGGTGGAAAGAGCACTTGTGGGGAGACCCC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     579365 352 +    730504 ACAAGG-GCCAACCCATGACCGTGAGAGGAGCACATGTAGCTATGAGTGCG-GGGCGTGCAGGTGA--GCAC--GTGACCG-AGCATGAAGACAGCACTC--GGAA-AGCGCGTGTGCACATGAGCGTGAGGAG-GGGCACAAGCGGGAGAGGGGAGGAT---GCGTGTGTG-TGGCCAGCGCGGGCAC--CCAGGGCAGGGGC-AGGAGCAA-GTGAGCCTG-GCAAGTAGAATGAGTCCCCAGAAGAAGCCAAATTCCGGGGGA-------ACAAAACGTGGGCCTGTGTGGAAGGGCAAGGAGGACGGAGAGAGATTGAGAC---AGAGAAAAGGGAAG---GCCCCTGCAGGGGTGGGAAGAGCACTTGTCAGGAGACCCC
i proCoq1.NW_012152574v1   C 0 I 39
s otoGar3.GL873550            91103 371 +  18854210 ATAAGG-ACCAACCCATGACCATGAGAGGAGCACATGTAGCTATGAGAGCA-GGCTATGCACCAGA--GCACATGTGACTGAAGCATGAAGAAAGCACATAGGAAA-AGCATGTGTGTGTATAAGCATGTGCAGTTGAGACAAGCCGGGGAGGGGAAGGT---ACACGTGTGTTGACAAGTGTGAGCACAAACAGAGCAGAGGCAAGGAGCAA-GTGAGCCTTCGCAAGAAGAATGAGTCCCCAGAAGAAGCCAAATTCAAGGGGAACAAAACACAAAACATGGGACTGTGTGGAAAGGCAAGTGAGAAGAAAAGAGATTATGGCAG-AGAGAAAAGGAAAG---GCCCCTGC-TAGGTGGGAAGAGCACTTGTAGGGAGACCCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57913621 300 -  94987271 -CACTGCACACACCCACAACCA------------------CTGTGCACTCACAG--GTGC-----A--GCATATGCAAACA-CAAGTGATAGCAGCATTCAGAAAAGAACATATTTGCACAGAAACACATCCAGCTGCC-----TAGGAGAGGAGAGGATATGgtgtgtgtg-tgtgtg-tgtgtgtgt------------------gtgtgt-gtgtgtgtgtgtgtgGTGAGT---CCCCTGGAAGAAGCAACATTTAAGGAGA-------GGAAGACACAGGGACAT---GGAGGAGAAGGATGATGGAAGGAGATTCTAAT-GCTGAGAAATGGAGAGAAAGCCCTGAT-AA---------------TGTAGGAAGACCCC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26212759 193 +  26524999 ACAGTG-GTGCCCCCACCACCA----------------------------G-GG--CCACATGAGG--CCACAGG--ACAG-A-----------------GGAGAA-AGCATGTGTGCACATGAGCA-----------------CAGGAGGA-----------GCATGTGAG--------TGAG-------GAGGAGCAGAGGT-GGGGGCAT----------------------GAGTGCCAGGAAAAGGCAACATCCAGGGGAC-------A--------GAGCAGGT--------GCAGGTACA---------------------GGTGCGAGGGATGG---GTCTGTGT----------------------AGGAGACC--
i canFam3.chr35            C 0 C 0
e micMur3.chr6                84369 476 + 123392446 I
e dasNov3.JH582591            19397 2003 +    102524 I

a score=857123.000000
s hg38.chr6_GL000254v2_alt   868547 78 +   4827813 TGCTGGACA----GGAACAGAGC-ACAAAGGCAGAGGAGCTG-CAGGGGTTGCCGTGGTAAC-----TAGAAGAGGGTG------TTGCATGGGA
s panTro5.chr6             29831219 78 + 175400573 TGCTGGACA----GGAACAGAGC-ACAAAGGCAGAGGAGCTG-CAGGGGTTGCCGTGGTAAC-----TAGAAGAGGGTG------TTGCATGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30066041 78 + 173848474 TGCTGGACA----GGAACAGAGC-ACAAAGGCAGAGGAGCTG-CAGGGGTTGCCGTGGTAAC-----TAGAAGAGGGTG------TTGCATGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5872339 78 +   6154872 TGCTGGACA----GGAACAGAGC-ACAAAGGCAGAGGAGCTG-CAGGGGTTGCCGTGGTAAC-----TAGAAGAGGGTG------TTGCATGGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74581170 78 + 122973662 TGCTGGACA----GGAACAGAGC-ACAAAGGCAGAGGAGCTG-CAGGGGTTGCCATGGTAAC-----TAGAAGAGGGTG------TTGCATGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30062400 78 + 172585720 TGCTGGACA----GGAACAGAGC-ACAAAGGCAGAGGAGCTG-CAGGGGTTGCCGTGGTAAC-----TAGAAGAGGGTG------TTGCATGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29725244 78 - 170955103 TGCTGGACA----GGAACAGAGC-ACAAAGGCAGAGGAGCTG-CAGGGGTTGCCGTGGTAAC-----TAGAAGAGGGTG------TTGCATGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2770663 78 -   2996164 TGCTGGACA----GGAACAGAGC-ACAAAGGCAGAGGAGCTG-CAGGGGTTGCCGTGGTAAC-----TAGAAGAGGGTG------TTGCATGGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     524291 78 +    766320 TGCTGGACA----GGAACAGAGC-ACAAAGGCAGAGGAGCTG-CAGGGGTTGCCGTGGTAAC-----TAGAAGAGGGTG------TTGCATGGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28981137 78 -  71996105 TGCTGGACA----GGAACAGAGC-ACAAAGGCAGAGGAGCGG-CAGGGGTTGCCGTGGTAAC-----TAGAAGAGGGTG------TTGCATGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     157286 78 +    290775 TGCTGGACA----GGAACAGAGC-ACAAAGGCAGAGGAGCTG-CAGGGGTTGCCGTGGTAAC-----TAGAAGAGGGTG------TTGCATGGGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2615720 78 -   3067355 TGCTGGACA----GGAACAGAGC-ACAAAGGCAGAGGAGCTG-CAGGGGTTGCCGTGGTAAC-----TAGAAGAGGGTG------TTGCATGGGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30054954 78 + 171630274 TGCTGGACA----AGAACAGAGC-ACAAAGGCAGAGGAGCTG-CAGGGGTTGCTGTGGTAAC-----TAGAAGAGGGTG------TTGCATGTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           203138 78 -    242197 TGCTGGACA----AGAACAGAGC-ACAAAGGCAGAGGAGCTG-CAGGGGTTGCCGTGGTAAC-----TAGAAGAGGGTG------TTGGATGTGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     195915 78 -   1771730 TGCTGGACA----AGAACAGAGC-ACAAAGGCAGAGGAGCTG-CAGAGGTTGCCGTGGTAAC-----TAGAAGAGGGTG------TTGCATGTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     270906 78 -    457564 TGCTGGACA----AGAACAGAGC-ACAAAGGCAGAGGAACTG-CAGGGGTTGCCGTGGTAAC-----TAGAAGAGGGTG------TTGCATGTGA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            91474 89 +  18854210 TGCTGGGGAGGGGGGAGCTGAGCTGCAAAGGCAGAGGAGCTG-CAGGGGTTGCCGTGGGAAC-----CAGACAGAGGCGGGAGAACTAGACAGGA
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               57913921 57 -  94987271 -----------------------------TGCTGCTGAAATGACAGGAGTTGCTGTAGTAACAACTATACAAGACAGCC------T---ATGGGA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26212952 31 +  26524999 -----------------------TGGAAGGGGAGGGGGGCAG-GAGGGG-----GCGGGA-----------------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6                84369 476 + 123392446 I
e dasNov3.JH582591            19397 2003 +    102524 I
e proCoq1.NW_012152574v1     579717 39 +    730504 I

a score=1409195.000000
s hg38.chr6_GL000254v2_alt   868625 118 +   4827813 AGAGAAAGATgcagtgaggctgctgaggaggcagcgtgtgagcagtgagcagCTTCAAGCCAGGTACGAACTAAATTGTGAAGAGGTGATACAAAATTACATGAAGCAG-TAAGAGAGA
s panTro5.chr6             29831297 118 + 175400573 AGAGAAAGATgcagtgaggctgctgaggaggcagcgtgtgagcagtgagcagCTTCAAGCCAGGTACGAACTAAATTGTGAAGAGGTGATACAAAATTACATGAAGCAG-TAAGAGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30066119 118 + 173848474 AGAGAAAGATgcagtgaggctgctgaggaggcagcgtgtgagcagtgagcagCTTCAAGCCAGGTACGAACTAAATTGTGAAGAGGTGATACAAAATTACATGAAGCAG-TAAGAGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5872417 118 +   6154872 AGAGAAAGATgcagtgaggctgctgaggaggcagcgtgtgagcagtgagcagCTTCAAGCCAGGTACGAACTAAATTGTGAAGAGGTGATACAAAATTACATGAAGCAG-TAAGAGAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74581248 118 + 122973662 AGAGAAAGATgcagtgaggctgctgaggaggcagcgcgtgagcagtgagcagCTTCAAGCCAGGTACGAACTAAATTGTGAAGAGGTGATACAAAATTACATGAAGCAG-TAAGAGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30062478 118 + 172585720 AGAGAAAGATgcagtgaggctgctgaggaggcagcgcgtgagcagtgagcagCTTCAAGCCAGGTACGAACTAAATTGTGAAGAGGTGATACAAAATTACATGAAGCAG-TAAGAGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29725322 118 - 170955103 AGAGAAAGATgcagtgaggctgctgaggaggcagcgcgtgagcagtgagcagCTTCAAGCCAGGTACGAACTAAATTGTGAAGAGGTGATACAAAATTACATGAAGCAG-TAAGAGAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2770741 118 -   2996164 AGAGAAAGATgcagtgaggctgctgaggaggcagcgcgtgagcagtgagcagCTTCAAGCCAGGTACGAACTAAATTGTGAAGAGGTGATACAAAATTACATGAAGCAG-TAAGAGAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     524369 118 +    766320 AGAGAAAGATgcagtgaggctgctgaggaggcagcgcgtgagcagtgagcagCTTCAAGCCAGGTACAAACTAAATTGTGAAGAGGTGATACAAAATTACATGAAGCAG-TAAGAGAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28981215 118 -  71996105 AGAGAAAGATgcagtgaggctgctgaggaggcagcgcgtgagcagtgagcagCTTCAAGCCAGGTACGAACTAAATTGTGAAGAGGTGATACAAAATTACATGAAGCAG-TAAGAGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     157364 118 +    290775 AGAGAAAGATgcagtgaggctgctgaggaggcagcgcgtgagcagtgagcagCTTCAAGCCAGGTACAAACTAAATTGTGAAGAGGTGATACAAAATTACATGAAGCAG-TAAGAGAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2615798 118 -   3067355 AGAGAAAGATGCAGTGAGGCTGCTGAGGAGGCAGCGCGTGAACAGTGAGCAGCTTCAAGCCAGGTACGAACTAAATTGTGAAGAGGTGATACAAAATTACATGAAGCAG-TAAGAGAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30055032 110 + 171630274 AGAGAAAGATGCAGTGAGGCTGCTGAGGAGGCAGCAA-------GTGAGCAGCTTCAAGCCAGGTACAAACTTAATGGTGAAGAGGTGATA-AAAATTACATGAAGCAG-TAAGAGAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           203216 112 -    242197 AGAGAAAGATGCAGTGAGGCTGCTGAGGAGGCAGCAC-------GTGAGCAGCTTCAAGCCAGGTACAAACTTAATGGTGAAGAGGTGATACAAAATTACATGAAGCAGTTAAGAGAGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     195993 111 -   1771730 AGAGAAAGATGCAGTGAGGCTGCTGAGGAGGCAGCAC-------GTGAGCAGCTTCAAGCCAGGTACAAACTTAATGGTGAAGAGGTGATACAAAATTACATGAAGCAG-TAAGAGAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     270984 111 -    457564 AGAGAAAGATGCAGTGAGGCTGCTGAGGAGGCAGCGC-------ATGAGCAGCTTCAAGCCAGGTACAAACTTAATGGTGAAGAGGTGATACAAAATTACATGAAGCAA-TAAGAGAGA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     579756 109 +    730504 agaggaggatgcagggaggcggctgaggaggcaggga-------gTGAGCAGCTCCAAA-CAGAGACAAACTAAATGAGGAAGCAGTGATATAAGACTACATGAA-TGG-AGAGAGAGA
i proCoq1.NW_012152574v1   I 39 C 0
s otoGar3.GL873550            91565 108 +  18854210 GGAGGAAGATGCA-GCACGCAGCTGAGGAGGCAGTGA-------GTGAGCTGCTCCAAG-CAGGGACAAACTAAATTAGGAAGTAGTGATATAAAATTACATGAA-TGG-GTAGAGAGA
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               57913978  99 -  94987271 ---GACAAACG---AGATGCCCCTCTGGAGTCATGA--------GTGAATAGCTCCAAGCAGGGTTCAAACAAAACTGTGAAGTGGTGATATAAAATTATATG-----G-AAAGAAAGA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26212983  47 +  26524999 ---------------GGGGCCGGTGGGGAAGC---------------AGCAGC-----GCCTGGTGCGCACTGGACAGTGGA-------------------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6                84369 476 + 123392446 I
e dasNov3.JH582591            19397 2003 +    102524 I

a score=1185823.000000
s hg38.chr6_GL000254v2_alt   868743 76 +   4827813 AAAAGGTCTGTTTCCCAGAGGTATGAGAGACCCAAATCAGCCCAGAACTCACAGGGGGACATGTATTTACAAGAGA
s panTro5.chr6             29831415 76 + 175400573 AAAAGGTCTGTTTCCCAGAGGTATGAGAGACCCAAATCAGCCCAGAACTCACAGGGGGACATGTATTTACAAGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30066237 76 + 173848474 AAAAGGTCTGTTTCCCAGAGGTATGAGAGACCCAAATCAGCCCAGAACTCACAGGGGGACATGTATTTACAAGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5872535 76 +   6154872 AAAAGGTCTGTTTCCCAGAGGTATGAGAGGCCCAAATCAGCCCAGAACTCACAGGGGGACATGTATTTACAAGAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74581366 76 + 122973662 AAAAGGTCTGTTTCCCAGAGGTATGAGAGACCCAAATCAGCCCAGGACTCACAGGGGGACATGTATTTACAAGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30062596 76 + 172585720 AAAAGGTCTGTTTCCCAGAGGTATGAGAGACCCAAATCAGCCCAGGACTCACAGGGGGACATGTATTTACAAGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29725440 76 - 170955103 AAAAGGTCTGTTTCCCAGAGGTATGAGAGACCCAAATCAGCCCAGGACTCACAGGGGGACATGTATTTACAAGAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2770859 76 -   2996164 AAAAGGTCTGTTTCCCAGAGGTATGAGAGACCCAAATCAGCCCAGGACTCACAGGGGGACATGTATTTACAAGAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     524487 76 +    766320 AAAAGGTCTGTTTCCCAGAGGTATGAGAGACCCAAATCAGCCCAGGACTCACAGGGGGACATGTATTTACAAGAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28981333 76 -  71996105 AAAAGGTCTGTTTCCCAGAGGTATGAGAGACCCAAATCAGCCCAGGACTCACAGGGGGACATGTATTTACAAGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     157482 76 +    290775 AAAAGGTCTGTTTCCCAGAGGTATGAGAGACCCAAATCAGCCCAGGACTCACAGGGGGACATGTATTTACAAGAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2615916 76 -   3067355 AAAAGGTCTGTTTCCCAGAGGTATGAGAGACCCAAATCAGCCCAGGACTCACAGAGGGACATGTATTTACAAGAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30055142 76 + 171630274 AAAAGGTCTGTTTCCCAGAGGTATGAGAGACCCAAATCAGCCCAGGACTCACAGAGGGACATGTATTTACAAGAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           203328 76 -    242197 AAAAGGTCTGTTTCCCAGAGGTATGAGAGACCCAAATCAGCCCAGGACTCACAGAGGGACATGTATTTACAAGAGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     196104 76 -   1771730 AAAAGGTCTGTTTCCCAGAGGTATGAGAGACCCAAATCGGCCCAGGACTCACAGAGGGACATGTATTTACAAGAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     271095 76 -    457564 AAAAGGTCTGTTTCCCAGAGGTATGAGAGACCCAAATCAGCCCAGGACTCACAGAGGGACATGTATTTACAAGATA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                84845 76 + 123392446 AAAAGGTCTGTTTCCCAGAGGTATTAGAGATCCAGAAGAGCCCAGGACTCACAGACGGACGTGTATTTACAGGAGA
i micMur3.chr6             I 476 I 96
s proCoq1.NW_012152574v1     579865 76 +    730504 AAAAGGTCTGTTTCCCAGAGGTATTAGAGACCCAAATAAGCCCAGGACTCGCAGATGGACATGTATTTACAAGAGA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            91673 76 +  18854210 AAAAGGTCTGTTTCACAGAGGTATTAGAGACCCAGATGAGCCCAGGACTCACAGAAGGATATGTATTTACAAGAGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57914077 74 -  94987271 AAACCATCTGTTTCCCAGA-GTACTGAAGACCCAGATAACCCCAG-ATGCACAGAATGACATGTATTTCTAAGAGG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26213030 18 +  26524999 -------------TCTAGAAG-------------------------------AGGGGGGCGT--------------
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            19397 2003 +    102524 I

a score=1327183.000000
s hg38.chr6_GL000254v2_alt   868819 115 +   4827813 TGAGATTGGATAGCATGTTCTTCCCAGCTGGGGATGGGGACCCCCTGCTTCCT--GAGtcccctgcc------cttcccc-tctccctttccctccccct----actggcctgtcctccctcacccta--
s panTro5.chr6             29831491 115 + 175400573 TGAGATTGGATAGCATGTTCTTCCCAGCTGGGGATGGGGACCCCCTGCTTCCT--GAGtcccctgcc------cttcccc-tctccctttccctccccct----actggcctgtcctccctcacccta--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30066313 115 + 173848474 TGAGATTGGATAGCATGTTCTTCCCAGCTGGGGATGGGGACCCCCTGCTTCCT--GAGtcccctgcc------cttcccc-tctccctttccctccccct----actggcctgtcctccctcacccta--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5872611 115 +   6154872 TGAGATTGGATAGCATGTTCTTCCCAGCTGGGGATGGGGACCCCCTGCTTCCT--GAGtcccctgcc------cttcccc-tctccctttccctccccct----actggcctgtcctccctcacccta--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74581442 115 + 122973662 TGAGATTGGATAGCATGTTCTTCCCAGCTGGGGATGGGGACCCCCTGCTTCCT--GAGtcccctgcc------cttcccc-tctccctttccctccccct----actggcctgtcctccctcacccta--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30062672 116 + 172585720 TGAGATTGGATAGCATGTTCTTCCCAGCTGGGGATGGGGACCCCCTGCTTCCT--GAGtcccctgcc------cttccccgtctccctttcccaccccct----ACTGGCCTGTCCTCCCTCACCCTG--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29725516 116 - 170955103 TGAGATTGGATAGCATGTTCTTCCCAGCTGGGGATGGGGACCCCCTGCTTCCT--GAGTCCCCTGCC------CTTCCCCGTCTCCCTTTCCCACCCCCT----ACTGGCCTGTCCTCCCTCACCCTG--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2770935 116 -   2996164 TGAGATTGGATAGCATGTTCTTCCCAGCTGGGGATGGGGACCCCCTGCTTCCT--GAGTCccctgcc------cttccccgtctccctttcccgccccct----actggcctgtcctccctcaccctg--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     524563 116 +    766320 TGAGATTGGATAGCATGTTCTTCCCAGCTGGGGATGGGGACCCCCTGCTTCCT--GAGTCCCCTGCC------CTTCCCCATCTCCCTTTTCCGCCCCCT----ACTGGCCTGTCCTCCCTCACCCTG--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28981409 116 -  71996105 TGAGATTGGATAGCATGTTCTTCCCAGCTGGGGATGGGGACCCCCTGCTTCCT--GAGTCCCCCGCC------CTTCCCCGTCTCCCTTTCCCGCCCCCT----ACTGGCCTGTCCTCCCTCACCCTG--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     157558 116 +    290775 TGAGATTGGATAGCATGTTCTTCCCAGCTGGGGATGGGGACCCCCTGCTTCCT--GAGtcccctgcc------cttccccatctccctttcccgccccct----ACTGGCCTGTCCTCCCTCACCCTG--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2615992 115 -   3067355 TGAGATTGGATAGCATGTTCTTCCCAGCTGGGGATGGGGACCCCCTGCTTCCT--GAGTCCCCTGGC------CTT-CCTGTCTCCCTTTCCCACCCGCT----ACTGGCCTGTCCTCCCTCACCCTG--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30055218 114 + 171630274 TGAGATTGGATAGCATGTTCTTCCTAGCTGGGGATGGGGACCCCCTGCTTCCT--GAGTCCCCTG-C------CTTCCCC-TCTCCCTTTCCCTCCTCCT----ACTGGCCTGTCTTCCCTCACCCTG--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           203404 115 -    242197 TGAGATTGGATAGCATGTTCTTCCTAGCTGGGGATGGGGACCCCCTGCTTCCT--GAGtcccctgcc------cttcccc-tctccctttccctccccct----ACTGGCCTGTCCCCCTTCACCCTG--
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     196180 115 -   1771730 TGAGATTGGATAGCATGTTCTTCCTTGCTGGGGATGGGGACCCCCTGCTTCCT--GAGtcccctgcc------ctttccc-tctccctttccctccccct----ACTGGCCTGTCCTCCCTCACCCTG--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     271171 115 -    457564 TGAGATTGGATAGCATGTTCTTCCTAGCTGGGGATGGGGACCCCCTGCTTCCT--GAGtcccctgcc------cttcccc-tctccctttccctccccct----actggcctgtcctccctcaccctg--
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     579941 104 +    730504 TGGGATTGGA--------CCTTCCC--CTGGGGAT-AGGAGACCCTGCCTTCCC-GAGTCCCCC---------CCTTCCA-TCTCTCTCTCCCCACCCCC--AAAGTGGCCTGTCCTCCCTCACACGC--
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            91749 121 +  18854210 TGAGATTGGACAGCATGTCATTCCCAACTGGGGAT------TCCCTGCTTCCCCTGAGTCCCCCATTTGACGACATCTCG-TCTCGCTTTCCCCACCCCCCTAGACTGGCCTGTCCTCCCTCACACTC--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57914151  89 -  94987271 -GGGATTGGA--GCTTGTTCT-------------------CCACCCTCTTCCC--AGTTCCCCACCC------ACTCCCC-ACACCCTTCCCT--CCCCT----GCTGGCC--TCATCCTTCTCGATA--
i mm10.chr17               C 0 I 2
s canFam3.chr35            26213048  29 +  26524999 -------------------------------------------------------------------------------------------------CCT----CCCAGCCAGTCCCCTCCCCGCTCACG
i canFam3.chr35            C 0 C 0
e micMur3.chr6                84921  96 + 123392446 I
e dasNov3.JH582591            19397 2003 +    102524 I

a score=3448701.000000
s hg38.chr6_GL000254v2_alt   868934 184 +   4827813 ccctCACTTATAAAGCAAATGCACTCGACTCCCATCACAGCTAAGCCGGTCGGGGGGCTCAGGGGGTCCCCTGGGCAGGCCCCCAGAGGGTTCTGGGGGTGTCGGTGGGTGGCGCCGGGAGCGGAGCTGCTGCCGAGACTGGAGTTGATGGCGCAGTTCAGAGACACGCTCCTCTTTCTGGAGG
s panTro5.chr6             29831606 184 + 175400573 ccctCACTTATAAAGCAAATGCACTCGACTCCCATCACAGCTAAGCCGGTCGGGGGGCTCAGGGGGTCCCCTGGGCAGGCCCCCAGAGGGTTCTGGGGGTGTCGGTGGGTGGCGCCGGGAGCGGAGCTGCTGCCGAGACTGGAGTTGATGGCGCAGTTCAGAGACACGCTCCTCTTTCTGGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30066428 184 + 173848474 ccctCACTTATAAAGCAAATGCACTCGACTCCCATCACAGCTAAGCCGGTCGGGGGGCTCAGGGGGTCCCCTGGGCAGGCCCCCAGAGGGTTCTGGGGGTGTCGGTGGGTGGCGCCGGGAGCGGAGCTGCTGCCGAGACTGGAGTTGATGGCGCAGTTCAGAGACACGCTCCTCTTTCTGGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5872726 184 +   6154872 ccctCACTTATAAAGCAAATGCACTCGACTCCCATCACAGCTAAGCCGGTCGGGGGGCTCTGGGGGTCCCCTGGGCAGGCCCCCAGAGGGTTCTGGGGGTGTCGGTGGGTGGCGCCGGGAGCGGAGCTGCTGCCGAGACTGGAGTTGATGGCGCAGTTCAGAGACACGCTCCTCTTTCTGGAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74581557 184 + 122973662 ccctCACTTATAAAGCAAATGCACTCGACTCCCATCACAGCTAAGCCGGTCGGGGGGCTCAGGGGGTCCCCTGGGCAGGCCCCCAGAGGGGTCTGGGGGTGTCGGTGGGTGGCGCCGGGAGCGGAGCTGCTGCCGAGACTGGAGTTGATGGCGCAGTTCAGAGACACGTTCCTCTTTCTGGAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30062788 184 + 172585720 CCCTCACTTATAAAGCAAATGCACTCGACTCCCATCACAGCTAAGCCGGTCGGGGGGCTCAGGGGGTCCCCTGGGCAGGCCCCCAGAGGGGTCTGGGGGTGTCGGCGGGTGGCGCCGGGAGCGGAGCTGCTGCCGAGACTGGAGTTGATGGCGCAGTTCAGAGACACGCTCCTCTTTCTGGAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29725632 184 - 170955103 CCCTCACTTATAAAGCAAATGCACTCGACTCCCATCACAGCTAAGCCGGTCGGGGGGCTCAGGGGGTCCCCTGGGCAGGCCCCCAGAGGGGTCTGGGGGTGTCGGCGGGTGGCGCCGGGAGCGGAGCTGCTGCCGAGACTGGAGTTGATGGCGCAGTTCAGAGACACGCTCCTCTTTCTGGAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2771051 184 -   2996164 ccctCACTTATAAAGCAAATGCACTCGACTCCCATCACAGCTAAGCCGGTCGGGGGGCTCAGGGGGTCCCCTGGGCAGGCCCCCAGAGGGGTCTGGGGGTGTCGGCGGGTGGCGCCGGGAGCGGAGCTGCTGCCGAGACTGGAGTTGATGGCGCAGTTCAGAGACACGCTCCTCTTTCTGGAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     524679 184 +    766320 CCCTCACTTATAAAGCAAATGCACTCGACTCCCATCACAGCTAAGCCGGTCGGGGGGCTCAGGGGGTCCCCTGGGCAGGCCCCCAGAGGGGTCTGGGGGTGTCGGCGGGTGGCGCCGGGAGCGGAGCTGCTGCCGAGACTGGAGTTGATGGCGCAGTTCAGAGACACGTTCCTCTTTCTGGAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28981525 184 -  71996105 CCCTCACTTATAAAGCAAATGCACTCGACTCCCATCACAGCTAAGCCGGTCGGGGGGCTCAGGGGGTCCCCTGGGCAGGCCCCCAGAGGGGTCTGGGGGTGTCGGCGGGTGGCGCCGGGAGCGGAGCTGCTGCCGAGACTGGAGTTGATGGCGCAGTTCAGAGACACGCTCCTCTTTCTGGAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     157674 184 +    290775 CCCTCACTTATAAAGCAAATGCACTCGACTCCCATCACAGCTAAGCCGGTCGGGGGGCTCAGGGGGTCCCCTGGGCAGGCCCCCAGAGGGGTCTGGGGGTGTCGGCGGGTGGCGCCGGGAGCGGAGCTGCTGCCGAGACTGGAGTTGATGGCGCAGTTCAGAGACACGTTCCTCTTTCTGGAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2616107 184 -   3067355 CCCTCACTTATAAAGCAAATGCACTCGACTCCCATCACAGCTAAGCCGGTCGGGGGGCTCAGGGGGTCCCCTGGGCAGGCCCCCAGAGGGGTCTGGGGGTGTTGGCGGGTGGCGCCGGGAGCGGAGCTGCTGCCGAGACTGGAGTTGATGGCGCAGTTCAGAGACACGCTCCTCTTTCTGGAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30055332 184 + 171630274 CCCTCACTTATAAAGCAAATGCACGCGACTACCATCACAGCTAAGCCGGTCGGGAGGCTCAGGGGGTCCCCTGGGCAAACCCCCAGAGGGGTCCGGGGGTGTCGGTGGGTGGCGCCGGGAGCGGAGCTGCTGCCGAGACTGGAGTTGATGGCGCAGTTCAGAGACACGCTCCTCTTTCTGGAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           203519 184 -    242197 CCCTCACTTATAAAGCAAATGCACTCGACTACCATCACAGCTAAGCCGGTCGGGGGGCTCAGGGGGTCCCCTGGGCAAGCCCCCAGAGGGGTCCGGGGGTGTTGGTGGGTGGCGCCGGGAGCGGAGCTGCTGCCGAGACTGGAGTTGATGGCGCAGTTCAGAAACACGCTCCTCTTTCTGGAGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     196295 184 -   1771730 CCCTCACTTATAAAGCAAATGCACTCGACTACCATCACAGCTAAGCCGGTCAGGGGGCTCAGGGGGTCCCCTGGGCAAGCCCCCAGAGGGGTCTGGGGGTGTCGGTGGGTGGCGCCGGGAGCGGAGCTGCTGCCGAGACTGGAGTTGATGGCGCAGTTCAGAGACACGCTCCTCTTTCTGGAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     271286 184 -    457564 ccctCACTTATAAAGCAAATGCACTCGACTACCATCACAGCTAAGCCGGTCGGGGGGCTCAGGGGGTCCCCTGGGCAAGCCCCCAGAGGGGTCCGGGGGTGTCGGTGGGTGGCGCCGGGAGCGGAGCTGCTGCCGAGACTGGAGTTGATGGCGCAGTTCAGAGACACGCTCCTCTTTCTGGAGG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                85017 184 + 123392446 CCCTCACTTGTAAAGCAAGTGGACTCGACTCCCGTCACAGCTAAGCCGGTCGGGGGGCTCCGGGGCCCCCCTGGGCAAGCCCCCAGAGGGGTCTGGCGGTGTCGGGGGGTGGCGCCGGGAGCGGAGCTGCTGCCGAGACTGGAGCTGATGGCGCAGTTCCGAGACGCGCTCCTCTTTCTGAAGG
i micMur3.chr6             I 96 I 569
s proCoq1.NW_012152574v1     580045 184 +    730504 CCCTCACTTGTAAAGCAAGTGGACTCGACTCCCATCACAGCTAAGCCGGTCGGGGGGCTCAGGGGGCCCCCTGGGCAAGCCCCCAGAAGGGTCTGGGGGTGTAGGGGGGTGGCGCCGGGAGCGGAGCTGCTGCCGAGACTGGAGCTGATGGCGCAGTTCAGAGACGCGCTCCTCTTTCTGGAGG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            91870 184 +  18854210 CCCTCACTTATAAAGCAAGTGGACTCGACTCCCATCACAGCTAAGCCGGTCGGGGGGCTCGGGGGGCCCCCTGGGCAGGCCCCCAGAGGGTTCTGGGGGTGTTGGGGGGTGTCGCCGAGAACGGAGCTGTTGCCGAGACTGGAGCTGATGGCGCAGTTCAGAGACACGCTCCTCTTTCTGGAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57914242 184 -  94987271 CCCTCACTTGTAAAGCAAATGTACTCGACTCCCATCACAGCTAAGCCGGTCAGGGGGCTCTGAGGGTCCCCTGGGAAGGCCCCCAGAGGGGTCTGGGGGTGTTGGGGGGTGGCGCCGGGAGCGGATCTGCTGCCGAGACTGGAGCTGATGGCGCAGTTCAGAGACACGCTCCTCTTTCTGGAGG
i mm10.chr17               I 2 C 0
s canFam3.chr35            26213077 184 +  26524999 CCCTCACTTGTACAGCAAGTGAACCCGGCTCCCGTCACAGCTGAGCCGGTCAGGGGGCTCATGGGGTCCCCTGGGCAGGCCCCCTGAGGGGTCTGGGGGCGTCGGGGGGTGACGCCGAGGGCGCAGCTGCTGCCGAGAACGAAGCTGATGGCGCAGCTCGGACACTCGCTCCTCTTTCTGCgga
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            19397 2003 +    102524 I

a score=603562.000000
s hg38.chr6_GL000254v2_alt   869118 77 +   4827813 -AAGAAGCACAATTGGGATagtaggagaagag----gaggtgatgaagga----gtggggaggagggaaagagaggaAGGGCACAG
s panTro5.chr6             29831790 77 + 175400573 -AAGAAGCACAATTGGGATAGTAGGAGAAGAG----GAGGTGATGAAGGG----GTGGGGAGGAGGGAAAGAGAGAAGGGGCACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30066612 77 + 173848474 -AAGAAGCACAATTGGGATAGTAGGAGAAGAG----GAGGTGATGAAGGG----GTGGGGAGGAGGGAAAGAGAGAAGGGGCACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5872910 70 +   6154872 -AAGAAGCACAATTGGGATAGTAGGAGAAGAG----AAGGTGATGAAGGG----GTGGG--AGAGGGA-----AGAGGGAGGGCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74581741 77 + 122973662 -AAGAAGCACAATTGGGATAGTAGGAGAAGAG----GAGGTGATGGAAGG----GTGGGGAGGAGGGAAAGAGAGGAAGGGCACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30062972 59 + 172585720 -AAGAAGCACAATTGGGAGAGTAGGGGAAGAG----GAGGTAATGAAGGG----GTGGGGAGGAGGGA------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29725816 59 - 170955103 -AAGAAGCACAATTGGGAGAGTAGGGGAAGAG----GAGGTAATGAAGGG----GTGGGGAGGAGGGA------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2771235 59 -   2996164 -AAGAAGCACAATTGGGAGAGTAGGGGAAGAG----GAGGTAATGAAGGG----GTGGGGAGGAGGGA------------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     524863 59 +    766320 -AAGAAGCACAATTGGGAGAGCAGGGGAAGAG----GAGGTGATGAAGGG----GTGGGGAGGAGGGA------------------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28981709 58 -  71996105 -AAGAAGCACAATTGGGAGAGTAGGGGAAGAG----GAGGTAATGAAGGG----GT-GGGAGGAGGGA------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     157858 59 +    290775 -AAGAAGCACAATTGGGAGAGCAGGGGAAGAG----GAGGTGATGAAGGG----GTGGGGAGGAGGGA------------------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2616291 59 -   3067355 -AAGAAGCACAATTGggagagtaggagaagag----gaggtgatgaaggg----gtggggaggaggga------------------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30055516 56 + 171630274 -AAGAAGCACAATTGGGAGAGT---GGAAGAG----GAGGTCATGAAGGG----GTGGGGAGGAGGGA------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           203703 56 -    242197 -AAGAAGCACAGTTGGGATGGT---GGAAGAG----GAGGTCATGAAGCG----GTGGGGAGGAGGGA------------------
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     196479 52 -   1771730 -AAGAAGCACAATTGGGAGAGT---GGAA-------GAGGTCATGAAG-G----GTGTGGAGGAGGGA------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     271470 56 -    457564 -AAGAAGCACAATTGGGAGAGT---GGAAGAG----GAGGTCACGAAGGG----GTGGGGAGGAGGGA------------------
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     580229 71 +    730504 -AAGAA--ACAATTGCG-GAGCGGGAGAAGGG----GAGGTTGTGAAGGG----GTGG---GGAGGGAAAGAGAGGAAAAGCACAG
i proCoq1.NW_012152574v1   C 0 I 110
s otoGar3.GL873550            92054 76 +  18854210 -AAGAAACACAATTGCA-GAGTAGGAGAAGGG----TAGGTTGTAAAAGG----GTGGGGAGGAGGGAAATAGAGGAAGGGCACAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57914426 70 -  94987271 -AAGAAACACAATTGGGAGTGTGGGAGGAGGGTGATGTGGTATGGGAGGA----GGAAAGGGGAGGGAGAGACAT-----------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26213261 75 +  26524999 aagagaggac-----ggagaggttgaaagaag----gaggtcgggaggggcctcacagagaggagtgt--ggaagcaagggcatga
i canFam3.chr35            C 0 C 0
e micMur3.chr6                85201 569 + 123392446 I
e dasNov3.JH582591            19397 2003 +    102524 I

a score=1325683.000000
s hg38.chr6_GL000254v2_alt   869195 132 +   4827813 GGAAAGAGAGGAAGGGCACAGAAAAATGTAG-GGGGAGGACGTAGGGTAAG-TGGACAGAATAAATTAAAAGGAGAAATCAAAACAGAACAAGAAAAGCCAGAGAACATAA---GGATACCGATAG--AAAAAATGCGA
s panTro5.chr6             29831867 135 + 175400573 GGAAAGAGAGGAAGGGCACGGAAAAATGTAG-GGGGAGGACATAGGGTAAG-TGGACAGAATAAATTAAAAGGAGAAATCAAAACAGAACAAGAAAAGCCAGAGAACATAATGGGGATACCAATAG--AAAAAATGCGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30066689 135 + 173848474 GGAAAGAGAGGAAGGGCACGGAAAAATGTAG-GGGGAGGACATAGGGTAAG-TGGACAGAATAAATTAAAAGGAGAAATCAAAACAGAACAAGAAAAGCCAGAGAACATAATGGGGATACCAATAG--AAAAAATGCGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5872980 132 +   6154872 GGAAAGAGAGGAAGGGCACAGAAAAATGTAG-GGGGAGGACATAGGGTAAG-TGGACAGAATAAATTAAAAGGAGAAATCAAAACAGAACAAGAAAAGCCAGAGAACATAA---GGATACCAATAG--AAAAAATGCGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74581818 135 + 122973662 GGAAAGAGAGGAAGGGCACAGAAAAATGTAG-GGGGAGGACATAGGGTAAG-TGGACAGAATAAATTAAAAGGAGAAATCAAAACAGAACAAGAAAAGCCGGAGAACATAATGGGGATAACAACAG--AAAAAATGCGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30063031 132 + 172585720 ---AAGAGAGGAAGGGCATAGAAAAATGTAGGGGGGAGGACATAGGGTAAG-TGGACAGAAGAAATTAAAAGGAGAAATCAAAATAGAACAAGAAAAGCCAGAGAACATAATGGGGATACCAATA---AAAAAATGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29725875 132 - 170955103 ---AAGAGAGGAAGGGCATAGAAAAATGTAGGGGGGAGGACATAGGGTAAG-TGGACAGAAGAAATTAAAAGGAGAAATCAAAATAGAACAAGAAAAGCCAGAGAACATAATGGGGATACCAATA---AAAAAATGAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2771294 132 -   2996164 ---AAGAGAGGAAGGGCATAGAAAAATGTAGGGGGGAGGACATAGGGTAAG-TGGACAGAAGAAATTAAAAGGAGAAATCAAAATAGAACAAGAAAAGCCAGAGAACATAATGGGGATACCAATA---AAAAAATGAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     524922 132 +    766320 ---AAGAGAGGAAGGGCACAGAAAAATGTAGGGGGGAGGACATAGGGTAAG-TGGACAGAAGAAATTAAAAGGAGAAATAAAAATAGAACAAGAAAAGCCAGAGAACATAATGGGGATACCAATA---AAAAAATGAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28981767 132 -  71996105 ---AAGAGAGGAAGGGCATAGAAAAATGTAGGGGGGAGGACATAGGGTAAG-TGGACAGAAGAAATTAAAAGGAGAAATCAAAATAGAACAAGAAAAGCCAGAGAACATAATGGGGATACCAATA---AAAAAATGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     157917 132 +    290775 ---AAGAGAGGAAGGGCACAGAAAAATGTAGGGGGGAGGACATAGGGTAAG-TGGACAGAAGAAATTAAAAGGAGAAATAAAAATAGAACAAGAAAAGCCAGAGAACATAATGGGGATACCAATA---AAAAAATGAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2616350 131 -   3067355 ---aagagaggaA-GGCACAGAAAAATGTAGCGGGGAGGACATAGGGTAAG-TGGACAGAAGAAATTAAAAGGAGAAATCAAAATAGAACAAGAAAAGCCAGAGAACATAATGGGGATACCAATA---AAAAAATGAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30055572 130 + 171630274 ---AAGAAAGGAAGGGCACAGAAAAATGTCA-GGGGAGGGCATCGGGTAAG-CGGATAGAAGAAATTAAAAGG-GGAATCAAAACAGAAAAAGAAAGGCCAGAGAACATAATGAGGATACCAATAG---AAAAAAGAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           203759 134 -    242197 ---AAGAGAGGAAGGGCGCAGAAAAATGTCA-GGGGAGGGCAAAGGGTAAG-TGGACAGAAGAAATTAAAAGGAGAAATCAAAACAGAACAAGAAAGGCCAGAGAACACAATGGGGATACCAATAGGAAAAAAAAAAGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     196531 132 -   1771730 ---AAGAGAGGAAGGTCACAGAAAAATGTCA-GGGGAGGGCATAGGGTAAG-TGGACAGAAGAAATTAAAAGGAGAAATCAAAACAGAACAAGAAAGGCCAGATAATATAATGGGGATACCAATAG--AAAAAAAGAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     271526 132 -    457564 ---AAGAGAGGAAGGGCACAGAAAAATGTCA-GTGGAGGGCATAGGGTAAA-TGGACAGAAGAAATTAAAAGGAGAAATCAAAACAGAACAAGAAAGGCCAGAGAACATAATGGGGATACCAATAG--GAAAAAAAAGA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            92130 108 +  18854210 ---------------------AAAAATG----GAGAGGGACACAGGGTAAG-TG---ACAAGGAATTTAAATGAGAAATCAGGACACAACAAGGAAAGTCAATGAACATAATGAGAGCATCAAAAG--AAGAAAAGAAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57914496  96 -  94987271 --------------------------TGAAACGAGATGTACA---AGTAAG------AAAGGAAATTAAAATGTGAATCGAGGGAAGAACAAAGGAAGCCACAGAACATAACAGCG---CCAAGAG--AATGGATG---
i mm10.chr17               C 0 C 0
s canFam3.chr35            26213336 121 +  26524999 -----gaagagaagggaggggagagg------ggagggggcggggggcaggatggacagaaggaatggaaacgagagccaggaaagatggaagagagccgacacagcgaagtgggggtggcagttg--aagaga-----
i canFam3.chr35            C 0 C 0
e micMur3.chr6                85201 569 + 123392446 I
e dasNov3.JH582591            19397 2003 +    102524 I
e proCoq1.NW_012152574v1     580300 110 +    730504 I

a score=599342.000000
s hg38.chr6_GL000254v2_alt   869327 51 +   4827813 TCAGGGAAATAAGAGAGAATTTAAAAACAAAAGGAAAAAGTGGGGAAGGAG
s panTro5.chr6             29832002 51 + 175400573 TCGGGGAAATAAGAGAGAATTTAAAAACAAAAGGAAAAAGTGGGGAAGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30066824 51 + 173848474 TCAGGGAAATAAGAGAGAATTTAAAAACAAAAGGAAAAAGTGGGGAAGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5873112 51 +   6154872 TCAGGGAAATAAGAGAGAATTTAAAAACAAAAGGAAAAAGTGGGGAAGGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74581953 51 + 122973662 TCAGGGAAATAAGAGAGAATTTAAAAACAAAAGGAAAAAGTGGGGAAGGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30063163 51 + 172585720 TCAGGAAAATAAGAGAGAATTTAAAAACAAAAGGAAAAAGTGCAGAAGGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29726007 51 - 170955103 TCAGGAAAATAAGAGAGAATTTAAAAACAAAAGGAAAAAGTGCAGAAGGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2771426 51 -   2996164 TCAGGAAAATAAGAGAGAATTTAAAAACAAAAGGAAAAAGTGCAGAAGGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     525054 51 +    766320 TCAGGAAAATAAGAGAGAATTTAAAAACAAAAGGAAAAAGTGCGGAAGGAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28981899 51 -  71996105 TCAGGAAAATAAGAGAGAATTTAAAAACAAAAGGAAAAAGTGCAGAAGGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     158049 51 +    290775 TCAGGAAAATAAGAGAGAATTTAAAAACAAAAGGAAAAAGTGCGGAAGGAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2616481 51 -   3067355 TCAGGGAAATAAGAGAGAATTTAAAAACAAAAGGAAAAAGTGCGGAAGGAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30055702 46 + 171630274 TTAGGGAAAT-----AGAATTTAAAAACAAAAGGAAAAAATGGGGAAGGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           203893 46 -    242197 TTAGGGAAAT-----AGAATTTAAAAACAAAAGGAAAAAGTGGGGAAGGAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     196663 46 -   1771730 TTAGGGAAAC-----AGAATTTAAAAACAAAAGGAAAAAGTGGGGAAGGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     271658 46 -    457564 TTAGGGAAAT-----AGAATTTAAAAACAAAAGGAAAAAGTGGGGAAGGAG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     580410 51 +    730504 TCAGGGAAATCAGAGGGAATTTTAAAACAAAAGGAGGAAATGGGGAAGGAG
i proCoq1.NW_012152574v1   I 110 I 424
s otoGar3.GL873550            92238 50 +  18854210 TCAGGG-AATAAGAGGGAATTTTAAAACAAAAGGAGAAAATGAGGAAGGAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57914592 34 -  94987271 --GAGAAAATAAGTG---ATTTTAAAAGAAAAGAGAAAG------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26213457 33 +  26524999 tcagggaaga------------------gaaatgggggggggggcagggag
i canFam3.chr35            C 0 C 0
e micMur3.chr6                85201 569 + 123392446 I
e dasNov3.JH582591            19397 2003 +    102524 I

a score=356374.000000
s hg38.chr6_GL000254v2_alt   869378 30 +   4827813 --AGAAAAGTCAGTGCACAGAGCTTCCAATAA
s panTro5.chr6             29832053 30 + 175400573 --AGAAAAGTCAGTGCACAGAGCTTCCAATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30066875 30 + 173848474 --AGAAAAGTCAGTGCACAGAGCTTCCAATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5873163 30 +   6154872 --AGAAAAGTCAGTGCACAGAGCTTCCAATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74582004 30 + 122973662 --AGAAAAGTCAGTGTACAGAGCTTCCAATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30063214 30 + 172585720 --AGAAAAGTCAGTGCACAGAGCTTCCAATAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29726058 30 - 170955103 --AGAAAAGTCAGTGCACAGAGCTTCCAATAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2771477 30 -   2996164 --AGAAAAGTCAGTGCACAGAGCTTCCAATAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     525105 30 +    766320 --AGAAAAGTCAGTGCACAGAGCTTCCAATAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28981950 30 -  71996105 --AGAAAAGTCAGTGCACAGAGCTTCCAATAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     158100 30 +    290775 --AGAAAAGTCAGTGCACAGAGCTTCCAATAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2616532 30 -   3067355 --AGAAAAGTCAGTGCACAGAGCTTCCAATAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30055748 30 + 171630274 --AGAAAAGTCAGTGCACACAGCTTCCAATAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           203939 30 -    242197 --AGAAAAGTCAGTGCACACAGCTTCCAATAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     196709 30 -   1771730 --AGAAAAGTCAGTGCACACAGCTTCCAATAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     271704 30 -    457564 --GGAAAAGTCAGTGCACACAGCTTCCAATAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            92288 28 +  18854210 --AGAAAAATCAGTACACATA--TCCCAGTGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57914626  5 -  94987271 ---------------------------AATAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26213490 32 +  26524999 agaaACAGGTCAGTGCACACAGCCCCCCACCA
i canFam3.chr35            C 0 C 0
e micMur3.chr6                85201 569 + 123392446 I
e dasNov3.JH582591            19397 2003 +    102524 I
e proCoq1.NW_012152574v1     580461 424 +    730504 I

a score=4341313.000000
s hg38.chr6_GL000254v2_alt   869408 383 +   4827813 ATCAGAGAGA----TGTGTCAACCCAGTTGGAACAT-CCCTCTC--------TTTGGCATTGCACCAGCCCCTAATGACAGCCTGGGGCACAGTGAACGc---------ctgcccaggtcctttatgctggggctgcatgctacacccagctgctgtgagtgttgactactagaggctcacagctgcctctctccagttgtcacctacagccaacagccatcctcttgccttaaggaggctgagtcaaccacatagctcccactccagagcc-ct-tccacctg-ccaggccaacactggattttgcctgagatagaatcttgctcagccct-ttcccctcccctatgctgctccattcactccttacaggttg-tctcctaggaccct-ccctccatgagccaagaacat
s panTro5.chr6             29832083 383 + 175400573 ATCAGAGAGA----TGTGTCAACCCAGTTGGAACAT-CCCTCTC--------TTTGGCATTGCACCAGCCCCTAATGACAGCCTGGGGCACAGTGAACGc---------ctgcccaggtcctttatgctggggctgcatgctacacccagctgctgtgagtgttgactactagaggctcacagctgcctctctccagttgtcacctacagccaacagccatcctcttgccttaaggaggctgagtcaaccacgtagctcccactccagagcc-cc-tccacctg-ccaggccaacactggattttgcctgagacagaatcttgctcagccct-ttcccctcccctatgctgctccattcactccttacaggttg-tctcctaggaccct-ccctccatgagccaagaacat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30066905 383 + 173848474 ATCAGAGAGA----TGTGTCAACCCAGTTGGAACAT-CCCTCTC--------TTTGGCATTGCACCAGCCCCTAATGACAGCCTGGGGCACAGTGAACGc---------ctgcccaggtcctttatgctggggctgcatgctacacccagctgctgtgagtgttgactactagaggctcacagctgcctctctccagTTGTCACCTACAGCCAACAgccatcctcttgccttaaggaggctgagtcaaccacatagctcccactccagagcc-cc-tccacctg-ccaggccaacactggattttgcctgagacagaatcttgctcagccct-ttcccctcccctatgctgctccattcactccttacaggttg-tctcctaggaccct-ccctccatgagccaagaacat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5873193 383 +   6154872 ATCAGAGAGA----TGTGTCAACCCAGTTGGAACAT-CCCTCTC--------TTTGGCATTGCACCAGCCCCTAATGACAGCCTGGGGCACAGTGAACGc---------ctgcccaggtcctttatgctggggctgcatgctacacccagctactgtgagtgttgactactagaggctcacagctgcctctctccagttgtcacctacagccaacagccatcctcttgccttaaggaggctgagtcaaccacatagctcccactccagagcc-ct-tccacctg-ccaggccaacactggattttgcctgagatagaatcttgctcagccct-ttcccctcccctatgctgctccattcactccttacaggttg-tctcctaggaccct-ccctccatgagccaagaacat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74582034 383 + 122973662 ATCAGAGAGA----TGTGTCAACCCAGTTGGAACAT-CCCTCTC--------TTTGGCATTGCACCAGCCCCTAATGACAGCCTGGGGCACAGTGAACGc---------ctgcccaggtcctttatgctagggctgcatgcaacacccagctgctgtgagtgttgactactagaggctcacagctgcctctctccagttgtcacctacagccaacagccatcctcttgccttaaggaggctgagtcaaccacatagctcccactccagagcc-cc-tccacctg-ccaggccgacactggattttgcctgagatagaatcttgctcagccct-ttcccctcccctatgctgctccattcactccttacaggttg-tctcctaggaccct-ccctccatgaaccaagaacat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30063244 387 + 172585720 ATCAGGGAGA--TTTGTGTCAACCCAGTTGGAACAT-CCTTCTC--------TTTGGCATTGCACCAGCCCCTAATGACAGCCTAGGGCACAGCGAACGc---------ctgcccaggtcctttatgctggggctgcatgcgacacccagctgctgtgagtgttgactactagaggctcactgctgcctctcttcagttgccacccacagccaacagccatcctcttgccttaaggaggctgagtcaaccacatagctcccactccagagcc-cc-tccacctg-tcaggccaacactggattttgcctgagacagaatcttgctcagccct-ttcccctcccctatcctgctccactcactccttacaggttgttctcctaggaccctcccctccatgaaccaagaacat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29726088 387 - 170955103 ATCAGGGAGA--TTTGTGTCAACCCAGTTGGAACAT-CCTTCTC--------TTTGGCATTGCACCAGCCCCTAATGACAGCCTAGGGCACAGTGAACGc---------ctgcccaggtcctttatgctggggctgcatgcgacacccagctgctgtgagtgttgactactagaggctcactgctgcctctcttcagttgccacccacagccaacagccatcctcttgccttaaggaggctgagtcaaccacatagctcccactccagagcc-cc-tccacctg-tcaggccaacactggattttgcctgagacagaatcttgctcagccct-ttcccctcccctatcctgctccactcactccttacaggttgttctcctaggaccctcccctccatgaaccaagaacat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2771507 387 -   2996164 ATCAGGGAGA--TTTGTGTCAACCCAGTTGGAACAT-CCTTCTC--------TTTGGCATTGCACCAGCCCCTAATGACAGCCTAGGGCACAGTGAACGc---------ctgcccaggtcctttatgctggggctgcatgcgacacccagctgctgtgagtgttgactactagaggctcactgctgcctctcttcagttgccacccacagccaacagccatcctcttgccttaaggaggctgagtcaaccacatagctcccactccggagcc-cc-tccacctg-tcaggccaacactggattttgcctgagacagaatcttgctcagccct-ttcccctcccctatcctgctccactcactccttacaggttgttctcctaggaccctcccctccatgaaccaagaacat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     525135 387 +    766320 ATCAGAGAGA--TTTGTGTCAACCCAGTTGGAACAT-CCCTCTC--------TTTGGCATTGCACCAGCCCCTAATGACAGCCTGGGGCACAGTGAACGc---------ctgcccaggtcctttatgctggggctgcatgcgacacccagctgctgtgagtgttgactactagaggctcactgctgcctctcttcagttgccacccacagccaacagccatcctcttgccttaaggaggctgagtcaaccacatagctcccactccagagcc-cc-tccacctg-tcaggccaacactggattttgcctgagacagaatcttgctcagcctt-ttcccctcccctatcctgctccactcactcgttacaggttgttctcctaaggaccctccctccatgaaccaagaacat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28981980 387 -  71996105 ATCAGAGAGA--TTTGTGTCAACCCAGTTGGAACAT-CCTTCTC--------TTTGGCATTGCACCAGCCCCTAATGACAGCCTGGGGCACAGTGAACGc---------ctgcccaggtcctttatgctggggctgcatgcgacacccagctgctgtgagtgttgactactagaggctcactgctgcctctcttcagttgccacccacagccaacagccatcctcttgccttaaggaggctgagtcaaccacatagctcccactccagagcc-cc-tccaccta-tcaggccaacactggattttgcctgagacagaatcttgctcagccct-ttcccctcccctatcctgctccactcactccttacaggttgttctcctaggaccctcccctccatgaaccaagaacat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     158130 387 +    290775 ATCAGAGAGA--TTTGTGTCAACCCAGTTGGAACGT-CCCTCTC--------TTTGGCATTGCACCAGCCCCTAATGACAGCCTGGGGCACAGTGAACGc---------ctgcccaggtcctttatgctggggctgcatgcgacacccagctgctgtgagtgttgactactagaggctcactgctgcctctcttcagttgccacccacagccaacagccatcctcttgccttaaggaggctgagtcaaccacatagctcccactccagagcc-cc-tccacctg-tcaggccaacactggattttgcctgagacagaattttgctcagcctt-ttcccctcccctatcctgctccactcactcgttaccggttgttctcctaaggaccctccctccatgaaccaagaacat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2616562 385 -   3067355 ATCAGAGAGA--TTTGTGTCAACCCAGTTGGAACAT-CCCTCTC--------TTTGGCATTGCACCAGCCCCTAATGACAGCCTGGGGCACAGTGAACGc---------ctgcccaggtcctttatgctggggctgcatgcgccacccagctgctgtgagtgttgactactagaggctcactgctgcctctcctcagttgcca-ccacagccaacagccatcctcttgccttaaggaggctgagtcaaccacatagctcccactccagggcc-cc-tccacctg-tcaggccaacactggattttgcctgagacagaatcttgctcagccct-ttcccctcccctatcctgctccactcaattcttacaggttgttctcctaggaccct-ccctccatgaaccaagaacat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30055778 385 + 171630274 ATCACAGAGA--TCTGTGTCAACCCAGTTGGAACAT-CCCTCTC--------TTTGGCATTGCACCAGCCCCTAATGACAGCCTGGGGCATAGTGAACGc---------ctgcccaggtcctttatgctgggactgcatgcgacacccagctgctgtgagtgttgactgctagaggctcacagctgcctctccccagttgccACCCACAGCGAACAAccatcctcctgccttaagggggccaaggcaaccacatagctcccactccagagcc-cc-tccacctg-ccaggccaacactggattttacctaagacagaatcttgctcagccct-ttccccttccctatcctgccccactcactccttacaggttg-tctcctaggaccct-ccctccatgaagcaagaacat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           203969 385 -    242197 ATCACAGAGA--TTTGTGTCAACCCAGTTGGAACAT-CCCTCTC--------TTTGGCATTGCACCAGCCCCTAATGACAGCCTGGGGCATAGTGAACGc---------ctgcccaggtcctttatgctggggctgcatgcgacacccagctgctgtgagtgttgactgctagaggctcacagctgcctcTCCCCAGTTGCCAGCCACAGTCAACAACCATcctcctgccttaagggggccgagtcagccacataggtcccactccagagcc-cc-tccacctg-ccaggccaacactggattttatctaagacagaatcttgctcagccct-ttcccctctccggtcctgccccactcactccttacaggttg-tctcctaggtccct-ccctctatgaagcaagaacat
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     196739 385 -   1771730 ATCACAGAGA--TTTGTGTCAACCCAGTTGGAACAT-CCCTCTC--------TTTGGCATTGCACCAGCCCCTAAAGACAGCCTGGGGCATAGTGAACGc---------ctgcccaggtcctttatgctggggctgcatgcgacacccagctgctgtgagtgttgactgctagaggctcacagctgcctctccccagttgccacccacagccaacaaccatcctcctgccttaagggggccgagtcaaccacatagctcccactccagagtc-cc-tccacctg-ccaggccaacactggattttacctgagatagaatattgctcagccct-ttcccctcccctatcctgccccactcactccttacaggttg-tctcctaggaccct-ccctccatgaagcaagaacat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     271734 385 -    457564 ATCACAGAGA--TTTTTGTCAGCCCAGTTGGAACAT-CCCTCTC--------TTTGGCATTGCACCAGCCCCTAATGACAGCCTGGGGCATAGTGAATGc---------ctgcccaggtcctttatgctggggctgcatgcgacacccagctgctgtgagtgttgactgctagaggctcacagctgcctctcgccagttgccACCCACAGCCAACAAccatcctcctgccttaagggggccgagtcaaccacatagctcccactccagagcc-cc-tccatctg-ccaggccaacactggattttagctgagatagaatcttgctcagccct-ttcctctcccctatcctgccctactcactccttacaggttg-tctcctaggaccct-ccctccatgaagcaagaacat
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            92316 369 +  18854210 ATCACACAGAAATTTATGCCAACCCATTTGGAACATGGCCCCTC--------TCTGGCATTGTACCAGCCCCTAACTAAAGCCTGGGGCCtaatggacactgtgcgtggctgcccagatcccctttgctggggggacacatgacatccagctgctatgagtgttggctgc-------------------CTCCCCAAATGCCACCCACAGGCAATGACCACCCGCTTCCTTCCAAGAGGTCAAGTAAACTCTGTAGCTCCCACTCCAGAGCC-CCTTCCACCTGTCCAGGCAAACACCAGATTTTGCCTGAGACTGAATCATGCTCAACCCCATTCCCCTTCACAATCC------------TTCTTGCAGGTTT-TCTCCTGAGACCTT-CCTTCCATAAATCAAGAGCAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57914631 281 -  94987271 AT----GAAG--ATTATGTCAGATGAGTTGGAAGGT-CATTCCCCACCCCCACCCAGCACTGCG-CGGTCCCTAACTACAGCAT-GGACACAGT-AACAC------------------------------------------------------TGTGAGCAATGAAT------GGTTCACAATGGCCTCCCCCTAA-------CTACTGCCAAAGACTTCTTTTTTGCCTCAGAAAGGCTGAAAT----------------CTCCAGAGCCTCC-TCCCTCTCCTCAGGCTACCACTA--------CTGAAA----------CTCAACCCT-TCCCCTTTCGCTCTCCTGCTCCTC--------TGCAGG----CTTTCTGAGA-----CCCTCCGTAAATCACCAACAC
i mm10.chr17               C 0 C 0
e micMur3.chr6                85201 569 + 123392446 I
e dasNov3.JH582591            19397 2003 +    102524 I
e proCoq1.NW_012152574v1     580461 424 +    730504 I
e canFam3.chr35            26213522   0 +  26524999 C

a score=642918.000000
s hg38.chr6_GL000254v2_alt   869791 61 +   4827813 ctgaccctgtatctcaggcttggcttcagacaacccaagctaagacGCAAGCCTCCTGGA-----C
s panTro5.chr6             29832466 61 + 175400573 ctgaccctgtatctcaggcttggcttcagacaacccgagctaagacGCAAGCCTCCTGGA-----C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30067288 61 + 173848474 ctgaccctgtatctcaggcttggcttcagacaacccgagctaagacGCAAGCCTCCTGGA-----C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5873576 61 +   6154872 ctgaccctgtatctcaggcttggcttcagacaacccaagctaagacGCAAGCCTCCTGGA-----C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74582417 66 + 122973662 ctgaccctgtatttcaggcttggcttcagacaacccgagctaagacaCAAGCCTTCTGGACCCCGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30063631 66 + 172585720 ctgaccctgtacctcaggcttggcttcagacaacccaagctaagacaCAAGCCTCCTGGACCCCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29726475 66 - 170955103 ctgaccctgtacctcaggcttggcttcagacaacccaagctaagacaCAAGCCTCCTGGACCCCAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2771894 66 -   2996164 ctgaccctgtacctcaggcttggcttcagacaacccaagctaagacaCAAGCCTCCTGGACCCCAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     525522 66 +    766320 ctgactctgtacctcaggcttggcttcagacaacccgagctaagacaCAAGCCTCCTGGACCccac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28982367 66 -  71996105 ctgaccctgtacctcaggcttggcttcagacaacccgagctaagacaCAAGCCTCCTGGACCCCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     158517 66 +    290775 ctgactctgtacctcaggcttggcttcagacaacccgagctaagacaCAAGCCTCCTGGACCccac
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2616947 66 -   3067355 ctgaccctgtacctcaggcttggcttcagacaacccgagctaagacaCAAGCCTCTTGGACCCCAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30056163 61 + 171630274 ctgactctatatctcaggcttggcttcagacaaccctacgtaagacaCAAGCCTCCTGGAC-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           204354 61 -    242197 ctgaccctgtatctcaggcttcgcttcagacaaccctacctaagacaCAAGCCTCCTGGAC-----
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     197124 61 -   1771730 ctgaccctgtatcacaggcttggtttcagacaaccctacctaagacaCAAGCCTCCTGGAC-----
i cebCap1.NW_016107755v1   C 0 I 27
s aotNan1.NW_018509740v1     272119 61 -    457564 ctgaccctgtatctcaggcttggcttcagacaaccctacctaagacaGAAGCCTCCTGGAC-----
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            92685 37 +  18854210 CTGAC-------------------TTCAGATAACCTGACCTAC-ACACAGACCCCTC---------
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57914912 52 -  94987271 TTGAACCTGTACCTGAGGCTCAGCTACAGACAATCTGCCCTTAGACAGGGGC--------------
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            21400 57 +    102524 CTGAGCCCCCACCTCCAGCTCTGCTTTGGAAAACCTGGCGCAGGACGCAGGCCCCGT---------
i dasNov3.JH582591         I 2003 C 0
e micMur3.chr6                85201 569 + 123392446 I
e proCoq1.NW_012152574v1     580461 424 +    730504 I
e canFam3.chr35            26213522  0 +  26524999 C

a score=7350.000000
s hg38.chr6_GL000254v2_alt   869852 1 +   4827813 C
s panTro5.chr6             29832527 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30067349 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5873637 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74582483 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30063697 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29726541 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2771960 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     525588 1 +    766320 c
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28982433 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     158583 1 +    290775 c
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617013 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30056224 1 + 171630274 C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           204415 1 -    242197 G
i saiBol1.JH378357         C 0 C 0
s aotNan1.NW_018509740v1     272180 1 -    457564 C
i aotNan1.NW_018509740v1   C 0 I 10
e micMur3.chr6                85201 569 + 123392446 I
e mm10.chr17               57914964 0 -  94987271 C
e dasNov3.JH582591            21457 0 +    102524 C
e proCoq1.NW_012152574v1     580461 424 +    730504 I
e canFam3.chr35            26213522 0 +  26524999 C
e otoGar3.GL873550            92722 1 +  18854210 I
e cebCap1.NW_016107755v1     197185 27 -   1771730 I

a score=108975.000000
s hg38.chr6_GL000254v2_alt   869853 20 +   4827813 ACT-CCAACACCCTACCCTGA
s panTro5.chr6             29832528 20 + 175400573 ACT-CCAACACCCTACCCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30067350 20 + 173848474 ACT-CCAACACCCTACCCTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5873638 21 +   6154872 ACTCCCAACACCCTACCCTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74582484 20 + 122973662 ACT-CCAACACTCTACCCTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30063698 20 + 172585720 ACT-CCAACACCCCACCCTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29726542 20 - 170955103 ACT-CCAACACCCCACCCTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2771961 20 -   2996164 ACT-CCAACACCCCACCCTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     525589 20 +    766320 act-ccaacacccgcccccga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28982434 20 -  71996105 ACT-CCAACACCCCACCCTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     158584 20 +    290775 act-ccaacacccgcccccga
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617014 20 -   3067355 ACT-CCAACACCCCACCCTGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30056225 17 + 171630274 ----CCGCCACTCCATCCTGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           204416 17 -    242197 ----CCACCACCCCATCCTGC
i saiBol1.JH378357         C 0 C 0
s otoGar3.GL873550            92723 18 +  18854210 ACC-CCATCACCTCTCCCT--
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57914964  6 -  94987271 ---------------CCCTGG
i mm10.chr17               C 0 I 1
s dasNov3.JH582591            21457  7 +    102524 ----------CCGCAGC----
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                85201 569 + 123392446 I
e proCoq1.NW_012152574v1     580461 424 +    730504 I
e canFam3.chr35            26213522  0 +  26524999 C
e aotNan1.NW_018509740v1     272181 10 -    457564 I
e cebCap1.NW_016107755v1     197185 27 -   1771730 I

a score=13140.000000
s hg38.chr6_GL000254v2_alt   869873 2 +   4827813 CA
s panTro5.chr6             29832548 2 + 175400573 CA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30067370 2 + 173848474 CA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5873659 2 +   6154872 CA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74582504 2 + 122973662 CA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30063718 2 + 172585720 CA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29726562 2 - 170955103 CA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2771981 2 -   2996164 CA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     525609 2 +    766320 ca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28982454 2 -  71996105 CA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     158604 2 +    290775 ca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617034 2 -   3067355 CA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30056242 2 + 171630274 CA
i calJac3.chr4             C 0 I 4
s saiBol1.JH378357           204433 2 -    242197 CA
i saiBol1.JH378357         C 0 I 4
s proCoq1.NW_012152574v1     580885 2 +    730504 ca
i proCoq1.NW_012152574v1   I 424 C 0
s mm10.chr17               57914971 1 -  94987271 T-
i mm10.chr17               I 1 C 0
e micMur3.chr6                85201 569 + 123392446 I
e dasNov3.JH582591            21464 0 +    102524 C
e canFam3.chr35            26213522 0 +  26524999 C
e otoGar3.GL873550            92741 0 +  18854210 C
e aotNan1.NW_018509740v1     272181 10 -    457564 I
e cebCap1.NW_016107755v1     197185 27 -   1771730 I

a score=32611.000000
s hg38.chr6_GL000254v2_alt   869875 4 +   4827813 CCCA
s panTro5.chr6             29832550 4 + 175400573 CCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30067372 4 + 173848474 CCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5873661 4 +   6154872 CCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74582506 4 + 122973662 CCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30063720 4 + 172585720 CCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29726564 4 - 170955103 CCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2771983 4 -   2996164 CCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     525611 4 +    766320 ccca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28982456 4 -  71996105 CCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     158606 4 +    290775 ccca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617036 4 -   3067355 CCCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30056248 4 + 171630274 TCTT
i calJac3.chr4             I 4 C 0
s saiBol1.JH378357           204439 4 -    242197 CCCT
i saiBol1.JH378357         I 4 C 0
s aotNan1.NW_018509740v1     272191 4 -    457564 CGCT
i aotNan1.NW_018509740v1   I 10 C 0
s proCoq1.NW_012152574v1     580887 4 +    730504 ccca
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            92741 3 +  18854210 -CCG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57914972 4 -  94987271 GTCA
i mm10.chr17               C 0 C 0
e micMur3.chr6                85201 569 + 123392446 I
e dasNov3.JH582591            21464 0 +    102524 C
e canFam3.chr35            26213522 0 +  26524999 C
e cebCap1.NW_016107755v1     197185 27 -   1771730 I

a score=40409.000000
s hg38.chr6_GL000254v2_alt   869879 3 +   4827813 CCC
s panTro5.chr6             29832554 3 + 175400573 CCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30067376 3 + 173848474 CCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5873665 3 +   6154872 CCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74582510 3 + 122973662 CCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30063724 3 + 172585720 CCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29726568 3 - 170955103 CCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2771987 3 -   2996164 CCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     525615 3 +    766320 ccc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28982460 3 -  71996105 ACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     158610 3 +    290775 ccc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617040 3 -   3067355 CCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30056252 3 + 171630274 CCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           204443 3 -    242197 CCG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     197212 3 -   1771730 CCC
i cebCap1.NW_016107755v1   I 27 C 0
s aotNan1.NW_018509740v1     272195 3 -    457564 CCC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     580891 3 +    730504 ccc
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            92744 3 +  18854210 TCA
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               57914976 2 -  94987271 -CC
i mm10.chr17               C 0 I 1
s dasNov3.JH582591            21464 3 +    102524 CCC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                85201 569 + 123392446 I
e canFam3.chr35            26213522 0 +  26524999 C

a score=72928.000000
s hg38.chr6_GL000254v2_alt   869882 4 +   4827813 CCGC
s panTro5.chr6             29832557 4 + 175400573 CCGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30067379 4 + 173848474 CCGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5873668 4 +   6154872 CCGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74582513 4 + 122973662 CCGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30063727 4 + 172585720 CCGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29726571 4 - 170955103 CCGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2771990 4 -   2996164 CCGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     525618 4 +    766320 ccGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28982463 4 -  71996105 CCGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     158613 4 +    290775 ccGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617043 4 -   3067355 CCGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30056255 4 + 171630274 CCGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           204446 4 -    242197 CCGC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     197215 4 -   1771730 CCGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     272198 4 -    457564 CCGC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                85770 4 + 123392446 cCGC
i micMur3.chr6             I 569 C 0
s proCoq1.NW_012152574v1     580894 4 +    730504 ccgc
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            92749 4 +  18854210 CCGC
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               57914979 3 -  94987271 -CCC
i mm10.chr17               I 1 C 0
s dasNov3.JH582591            21467 4 +    102524 CCTC
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26213522 0 +  26524999 C

a score=3122522.000000
s hg38.chr6_GL000254v2_alt   869886 151 +   4827813 ACCTCAGCAATGATCTTTTCCAGTTCACGGTTCTCCTTCTCCAACAGCCGGGACTTCTCCTCCTCGTTGTTGTTGGTCGATGACCCTGTCTTCATGGTGTCCTGCGCCTCCGACTGCCATTCCCCTCGGGTGATCAGCCTGCGCATCTGGG
s panTro5.chr6             29832561 151 + 175400573 ACCTCAGCAATGATCTTTTCCAGTTCACGGTTCTCCTTCTCCAACAGCCGGGACTTCTCCTCCTCGTTGTTGTTGGTCGATGACCCTGTCTTCATGGTGTCCTGCGCCTCCGACTGCCATTCCCCTCGGGTGATCAGCCTGCGCATCTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30067383 151 + 173848474 ACCTCAGCAATGATCTTTTCCAGTTCACGGTTCTCCTTCTCCAACAGCCGGGACTTCTCCTCCTCGTTGTTGTTGGTCGATGACCCTGTCTTCATGGTGTCCTGCGCCTCCGACTGCCATTCCCCTCGGGTGATCAGCCTGCGCATCTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5873672 151 +   6154872 ACCTCAGCAATGATCTTTTCCAGTTCACGGTTCTCCTTCTCCAACAGCCGGGACTTCTCCTCCTCGTTGTTGTTGGTCGATGACCCTGTCTTCATGGTGTCCTGTGCCTCCGACTGCCATTCCCCTCGGGTGATCAGCCTGCGCATCTGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74582517 151 + 122973662 ACCTCAGCAATGATCTTTTCCAGTTCGCGGTTCTCCTTCTCCAACAGCCGGGACTTCTCCTCCTCGTTGTTGTTGGTAGATGACCCTGTCTTCATGGTGTCCTGTGCCTCCGACTGCCATTCCCCTCGGGTGATCAGCCTGCGCATCTGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30063731 151 + 172585720 ACCTCAGCAATGATCTTTTCCAGTTCGCGGTTCTCCTTCTCCAACAGCCGGGACTTCTCCTCCTCGTTGTTGTTGGTCGATGACCCTGTCTTCATGGTGTCCTGCGCCTCTGACTGCCATTCCCCTCGGGTGATCAGCCTGCGCATCTGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29726575 151 - 170955103 ACCTCAGCAATGATCTTTTCCAGTTCGCGGTTCTCCTTCTCCAACAGCCGGGACTTCTCCTCCTCGTTGTTGTTGGTCGATGACCCTGTCTTCATGGTGTCCTGCGCCTCCGACTGCCATTCCCCTCGGGTGATCAGCCTGCGCATCTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2771994 151 -   2996164 ACCTCAGCAATGATCTTTTCCAGTTCGCGGTTCTCCTTCTCCAACAGCCGGGACTTCTCCTCCTCGTTGTTGTTGGTCGATGACCCTGTCTTCATGGTGTCCTGCGCCTCCGACTGCCATTCCCCTCGGGTGATCAGCCTGCGCATCTGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     525622 151 +    766320 ACCTCAGCAATGATCTTTTCCAGTTCGCGGTTCTCCTTCTCCAACAGCCGGGACTTCTCCTCCTCGTTGTTGTTGGTCGATGACCCTGTCTTCATGGTGTCCTGCGCCTCCGACTGCCATTCCCCTCGGGTGATCAGCCTGCGCATCTGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28982467 151 -  71996105 ACCTCAGCAATGATCTTTTCCAGTTCACGGTTCTCCTTCTCCAACAGCCGGGACTTCTCCTCCTCGTTGTTGTTGGTCGATGACCCTGTCTTCATGGTGTCCTGCGCCTCCGACTGCCATTCCCCTCGGGTGATCAGCCTGCGCATCTGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     158617 151 +    290775 ACCTCAGCAATGATCTTTTCCAGTTCGCGGTTCTCCTTCTCCAACAGCCGGGACTTCTCCTCCTCGTTGTTGTTGGTCGATGACCCTGTCTTCATGGTGTCCTGCGCCTCCGACTGCCATTCCCCTCGGGTGATCAGCCTGCGCATCTAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617047 151 -   3067355 ACCTCAGCAATGATCTTTTCCAGTTCGCGGTTCTCCTTCTCCAACAGCCGGGACTTCTCCTCCTCGTTGTTGTTGGTCGATGACCCTGTCTTCATGGTGTCCTGCGCCTCCGACTGCCATTCCCCTCGGGTGATCAGCCTGCGCATCTGGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30056259 151 + 171630274 ACCTCAGCAATGATCTTTTCCAGTTCACGGTTCTCCTTCTCCAACAGCCGGGACTTCTCCTCCTCGTTGTTGTTGGTCGATGACCCTGTCTTCATGGTGTCCTGTGCCTCTGACTGCCATTCCCCTCGGGTGATCAGCCTGCGCATCTGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           204450 151 -    242197 ACCTCAGCAATGATCTTTTCCAGTTCACGGTTCTCCTTCTCCAGCAGCCGGGACTTCTCCTCCTCGTTGTTGTTGGTCGATGACCCTGTCTTCATGGTGTCCTGCGCCTCTGACTGCCATTCCCCTCGGGTGATCAGCCTGCGCATCTGGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     197219 151 -   1771730 ACCTCAGCAATGATCTTTTCCAGTTCACGGTTCTCCTTCTCCAACAGCCGGGACTTCTCCTCCTCGTTGTTGTTGGTCGATGACCCTGTCTTCATGGTGTCCTGAGCCTCTGACTGCCATTCCCCTCGGGTGATCAGCCTGCGCATCTGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     272202 151 -    457564 ACCTCAGCAATGATCTTTTCCAGTTCACGGTTCTCCTTCTCCAACAGCCGGGACTTCTCCTCCTCGTTGTTGTTGGTCGATGACCCTGTCTTCATGGTGTCCTGCGCCTCTGACTGCCATTCCCCTCGAGTGATCAGCCTGCGCATCTGGG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                85774 151 + 123392446 ACCTCGGCAATGATCTTCTCCAGTTCGCGGTTCTCCTTCTCCAGCAGCCGGGACTTCTCCTCCTCGTTGTTGTTGGTGGACGACCCTGTCTTCATGGTGTCCTGCGCCTCGGACTGCCACTCCCCTCGGGTGATCAGCCTGCGCATCTGGG
i micMur3.chr6             C 0 I 164
s proCoq1.NW_012152574v1     580898 151 +    730504 accTCGGCAATGATCTTCTCCAGTTCACGGTTCTCCTTCTCCAGCAGCCGGGACTTCTCCTCCTCGTTGTTGTTGGTGGATGACCCTGTCTTCATGGTGTCCTGCGCCTCGGACTGCCACTCCCCTCGGGTGATCAGCCTGCGCATCTGGG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            92753 151 +  18854210 ACCTCAGCAATGATCTTCTCCAGTTCACGGTTCTCCTTTTCCAGCAGCCGGGACTTCTCCTCCTCATTGTTGTTGGTGGATGACCCTGTCTTCATGGTGTCCTGCGCCTCAGACTGCCACTCCCCTCGGGTGATCAGTCTGCGCATCTGGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57914982 151 -  94987271 ACCTCGGCGATGATCTTTTCCAATTCACGGTTTTCCTTCTCCAACAGTCGGGACTTCTCTTCCTCATTGTTGTTGGTGGATGATCCTGTTTTCATTGTGTCCTGTGCTTCAGACTGCCATTCACCTCGAGTGATCAACCTGCGCATCTATG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26213522 151 +  26524999 ACCTCAGCAATGATCTTCTCCAGCTCCCGGTTCTCCTTCTCCAACAGTCGGGACTTCTCTTCCTCATTGTTGTTGGTCGACGACCCCGTTTTCATGGTATCCTGCGCCTCCGACTGCCACTCACCCCGGGTGATCAACCTGCGCATCTGGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            21471 151 +    102524 ACCTCGGCAATGATCTTCTCCAGCTCGCGGTTCTCCTTCTCCAGCAGCCGCGACTTCTCCTCCTCGTTGTTGTTGGTGGAGGAGCCCGTCTTCATGGTGTCCTGCGCCTCCGACTGCCACTCCCCGCGGGTGATCAGCCTGCGCATCTGGG
i dasNov3.JH582591         C 0 C 0

a score=342315.000000
s hg38.chr6_GL000254v2_alt   870037 24 +   4827813 GGCAAATGTTT-GGGCGTGGGGTGG
s panTro5.chr6             29832712 24 + 175400573 GGCAAATGTTT-CGGCGTGGGGTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30067534 24 + 173848474 GGCAAATGTTT-GGGCGTGGGGTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5873823 24 +   6154872 GGCAAATGTTT-GGGCGTGGGGTGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74582668 24 + 122973662 GGCAAATGTTT-GGGCGTGGGGTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30063882 24 + 172585720 GGCAAATGTTT-GGGTGTGGGGTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29726726 24 - 170955103 GGCAAATGTTT-GGGTGTGGGGTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2772145 24 -   2996164 GGCAAATGTTT-GGGTGTGGGGTGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     525773 24 +    766320 GGCAAATGTTT-GGGTGTGGGGTGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28982618 24 -  71996105 GGCAAATGTTT-GGGTGTGGGGTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     158768 24 +    290775 GGCAAATGTTT-GGGTGTGGGGTGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617198 24 -   3067355 GGCAAATGTTT-GGGTGTGGGGTGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30056410 24 + 171630274 GGCAAATGTTT-GGGCATGGGGTGG
i calJac3.chr4             C 0 I 26
s saiBol1.JH378357           204601 24 -    242197 GGCAAATGTTT-GGGCATGGCGTGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     197370 24 -   1771730 GGCAAATGTTT-GGCCATGGGGTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     272353 24 -    457564 GGCAAATGTTT-GGGCATGGGGTGG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     581049 19 +    730504 GGCAGAG------GGTGTGGGCTGG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            92904 24 +  18854210 GGCAAAGGCAT-AGGCATGGAGTGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57915133 24 -  94987271 GACAAACGTTT-GGGCATGGGGTGG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26213673 25 +  26524999 GGCCAAGGTTTGGGGTGTGAGATGG
i canFam3.chr35            C 0 I 5
s dasNov3.JH582591            21622 21 +    102524 ---CAGCATGG-GGGCGTGGGGTGG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                85925 164 + 123392446 I

a score=73079.000000
s hg38.chr6_GL000254v2_alt   870061 7 +   4827813 CCCAGCA
s panTro5.chr6             29832736 7 + 175400573 CCCAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30067558 7 + 173848474 CCCAGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5873847 7 +   6154872 CCCAGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74582692 7 + 122973662 CCCAGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30063906 7 + 172585720 CCCAGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29726750 7 - 170955103 CCCAGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2772169 7 -   2996164 CCCAGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     525797 7 +    766320 CCCAGCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28982642 7 -  71996105 CCCAGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     158792 7 +    290775 CCCAGCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617222 7 -   3067355 CCCAGCA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           204625 7 -    242197 CCCAGCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     197394 7 -   1771730 CCCAGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     272377 7 -    457564 CCCAGCA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     581068 7 +    730504 CTGAGCA
i proCoq1.NW_012152574v1   C 0 I 51
s otoGar3.GL873550            92928 7 +  18854210 TCAAGCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57915157 6 -  94987271 CTGAGC-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26213703 2 +  26524999 CC-----
i canFam3.chr35            I 5 C 0
s dasNov3.JH582591            21643 7 +    102524 CCAGACG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                85925 164 + 123392446 I
e calJac3.chr4             30056434 26 + 171630274 I

a score=109384.000000
s hg38.chr6_GL000254v2_alt   870068 25 +   4827813 AGGACTGTACTAGTGACTGGCTGAT
s panTro5.chr6             29832743 25 + 175400573 AGGACTGTACTAGTGATTGGCTAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30067565 25 + 173848474 AGGACTGTACTAGTGATTGGCTAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5873854 25 +   6154872 AGGACTGTACTAGTGATTGGCTGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74582699 25 + 122973662 AGGACTGTACTAGTGATTGGCTGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30063913 25 + 172585720 GTGACTGTACTAGTGAATGGCTGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29726757 25 - 170955103 GTGACTGTACTAGTGAATGGCTGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2772176 25 -   2996164 GTGACTGTACTAGTGAATGGCTGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     525804 25 +    766320 GTGACTGTACTAGTGAATGGCTGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28982649 25 -  71996105 GTGACTGTACTAGTGAATGGCTGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     158799 25 +    290775 GTGACTGTACTAGTGAATGGCTGAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617229 25 -   3067355 GGGACTGTACTAGTGAATGGCTGAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           204632  4 -    242197 GGGA---------------------
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     197401  2 -   1771730 GA-----------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     272384  4 -    457564 GGGA---------------------
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            92935 25 +  18854210 GGGACTGCGCCAGAGCTCAGCTGAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57915163 25 -  94987271 AGGGCTGTGTAAGTGAGCAGCCAAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26213705 22 +  26524999 ---ATGGGGTCAGCGACTAACAGGT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            21650 17 +    102524 GGGGCGCCACCAGCCga--------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                85925 164 + 123392446 I
e proCoq1.NW_012152574v1     581075 51 +    730504 I
e calJac3.chr4             30056434 26 + 171630274 I

a score=197226.000000
s hg38.chr6_GL000254v2_alt   870093 31 +   4827813 GGAAGGTTGGAGGT--GGAAGGAAT-----GCTGATA--A
s panTro5.chr6             29832768 33 + 175400573 GGAAGGTTGGAGGT--GGAAGGAAT-----GCTGATAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30067590 33 + 173848474 GGAAGGTTGGAGGT--GGAAGGAAT-----GCTGATAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5873879 31 +   6154872 GGAAGGTTGGAGGT--GGAAGGAAT-----GCTGATA--A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74582724 31 + 122973662 GGAAGGTTGGAGGT--GGAAGGAAT-----GCTGATA--A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30063938 30 + 172585720 GGAAAGTTGGAGGT--GGAAAGAAT-----GC---TAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29726782 30 - 170955103 GGAAAGTTGGAGGT--GGAAAGAAT-----GC---TAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2772201 30 -   2996164 GGAAAGTTGGAGGT--GGAAAGAAT-----GC---TAAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     525829 30 +    766320 GGAAAGTTGGAGGT--GGAAAGAAT-----GC---TAAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28982674 30 -  71996105 GAAAAGTTGGAGGT--GGAAAGAAT-----GC---TAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     158824 30 +    290775 GGAAAGTTGGAGGT--GGAAAGAAT-----GC---TAAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617254 33 -   3067355 GGAAAGTTGGAGGT--GGAAAGAAT-----GCTGATAAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30056460 33 + 171630274 GGAAAGTTGGAAGT--GGAAGGAAT-----GCTGATAAGA
i calJac3.chr4             I 26 C 0
s saiBol1.JH378357           204636 30 -    242197 ---AAGTTGGAGGT--GGGAGGAAT-----GCTGATAAGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     197403 32 -   1771730 -AAAAGTTGGAGGT--ACAAGGAAT-----ACTGATAAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     272388 30 -    457564 ---AAGTAGGAGGT--GGAAGGAAT-----GCTGATAAGA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            92960 22 +  18854210 GGAGGGTTGGAGTT--GGAAGGAC----------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57915188 15 -  94987271 ------------------AAAGAGT-----AATGAAAA--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26213727 18 +  26524999 --------GGTGGTCAAGAAGGACA-----A---------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            21667 20 +    102524 ---------gggtg--ggaaggaattgacgg---------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                85925 164 + 123392446 I
e proCoq1.NW_012152574v1     581075 51 +    730504 I

a score=575694.000000
s hg38.chr6_GL000254v2_alt   870124 53 +   4827813 GAGTTGGGCCCAAAACAAGGGGAGGAGT---G----------------------AGAGGA---GGGTGAACGGA-AGGGCAG
s panTro5.chr6             29832801 53 + 175400573 GAGTTGGGCCCAAAACAAGGGGAGGAGT---G----------------------AGAGGA---GGGTGAACGGA-AGGGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30067623 53 + 173848474 GAGTTGGGCCCAAAACAAGGGGAGGAGT---G----------------------AGAGGA---GGGTGAACGGA-AGGGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5873910 53 +   6154872 GAGTTGGGCCCAAAACAAGGGGAGGAGT---G----------------------AGAGGA---GGGTGAATGGA-AGGGCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74582755 53 + 122973662 GAGTTGGGCCCAAAACAAGGGGAGGAGT---G----------------------AGAGGA---GGGTGAACGGA-AGGGCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30063968 52 + 172585720 GAGTTGGGCCC-AAACAAGGGGAGGAGT---G----------------------AAAGGA---GGGTGAATGGA-AGGTCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29726812 52 - 170955103 GAGTTGGGCCC-AAACAAGGGGAGGAGT---G----------------------AAAGGA---GGGTGAATGGA-AGGGCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2772231 52 -   2996164 GAGTTGGGCCC-AAACAAGGGGAGGAGT---G----------------------AAAGGA---GGGTGAATGGA-AGGGCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     525859 52 +    766320 GAGTTGGGCCC-AAACAAGGAGAGGAGT---G----------------------AAAGGA---GGGTGAATGGA-AGGGCAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28982704 52 -  71996105 GAGTTGGGCCC-AAACAAGGGGAGGAGT---G----------------------AGAGGA---GGGTGAATGGA-AGGGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     158854 52 +    290775 GAGTTGGGCCC-AAACAAGGAGAGGAGT---G----------------------AAAGGA---GGGTGAATGGA-AGGGCAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617287 49 -   3067355 GAGTTGGGCCC-AAACAAGG---GGAGT---G----------------------AGAGGA---GGGTGAATGGA-AGGGCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30056493 56 + 171630274 AAGTTGGGCCCAACACAAGGGGAGGAGT---G----------------------AGAGGAAGGGAGTGAACGGA-AGGGCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           204666 56 -    242197 AAGTTGGGCCCAACACAATGGGAGGAGT---G----------------------AGAGGAAGGGAGTGAACAGA-AGGGCAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     197435 56 -   1771730 AAGTTGGGCCCAACACAaggggaggagt---g----------------------agaggaaaggagtgaacaga-agggcag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     272418 56 -    457564 AGGTTGGGCCCAACACAAGGGGAGGAGT---G----------------------AGAGGAAGAGAGTGAATGGA-AGGGCAG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     581126 51 +    730504 AAGCTGGGCCCAAAACaagggaaggagc---a----------------------agagga---gggcgg--gca-agggcag
i proCoq1.NW_012152574v1   I 51 I 41
s otoGar3.GL873550            92982 54 +  18854210 AAGCTGGACCCAAAACAAAGGATGAAGTGAAA----------------------GGAGGG---GGGTGG--GGA-AGGGCAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57915203 35 -  94987271 -----------AAAACAAAAGACAGGCT-----------------------------------GGGCCAAAGTA-AGGACAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26213745 70 +  26524999 --GCTGGGCCCCCAACAAGGAGGGTGGG---GTAGGTTGGAGAGCACAGTCCCCAGATGG---AGGTGA---GG-AGGGCAG
i canFam3.chr35            C 0 I 8
s dasNov3.JH582591            21687 45 +    102524 --gatgg-----aaac--gggagggggc---g----------------------aggggt---ggaggggcggagggggcag
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                85925 164 + 123392446 I

a score=570031.000000
s hg38.chr6_GL000254v2_alt   870177  71 +   4827813 AGGAACTCAGTAAT-------ATAGGAAGGAG----------------------------GGATGGAGGGAACATGGGAACAAAGAGGGTGGGAGAAAA-----GCCAGAT
s panTro5.chr6             29832854  71 + 175400573 AGGAACTCAGTAAT-------ATAGGAAGGAG----------------------------GGATGGAGGGGACATGGGAACAAAGAGGGTGGGAGAAAA-----GCCAGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30067676  71 + 173848474 AGGAACTCAGTAAT-------ATAGGAAGGAG----------------------------GGATGGAGGGGACATGGGAACAAAGAGGGTGGGAGAAAA-----GCCAGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5873963  71 +   6154872 AGGAACTCAGTAAT-------ATAGGAAGGAG----------------------------GGATGGAGGGAACATGGGAACAAAGAGGGTGGGAGAAAA-----GCCAGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74582808  71 + 122973662 AGGAACTCAGTACT-------ATAGGAAGGAG----------------------------GGATGGAGGCAACATGGGAACAAAGAGGGTGGGAGAAAA-----GCCAGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30064020  71 + 172585720 AGGAACTCAGTACT-------GTAGGAAGGAG----------------------------GGAGGGAGGGAACATGGGACTAAAGAGGGTGAGAGAAAA-----AATAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29726864  71 - 170955103 AGGAACTCAGTACT-------GTATGAAGGAG----------------------------GGAGGGAGGGAACATGGGACTAAAGAGGGTGAGAGAAAA-----AATAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2772283  71 -   2996164 AGGAACTCAGTACT-------GTAGGAAGGAG----------------------------GGAGGGAGGGAACATGGGACTAAAGAGGGTGAGAGAAAA-----AATAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     525911  71 +    766320 AGGAACTCAGTACT-------GTAGGAAGGAG----------------------------GGAGGGAGGGAACATGGGACTAAAGAGGGTGAGAGAAAA-----AATAGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28982756  71 -  71996105 AGGAACTCAGTACT-------GTAGGAAGGAG----------------------------GGAGGGAGGGAACATGGGACTAAAGAGGGTGAGAGAAAA-----AATAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     158906  71 +    290775 AGGAACTCAGTACT-------GTAGGAAGGAG----------------------------GGAGGGAGGGAACATGGGACTAAAGAGGGTGAGAGAAAA-----AATAGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617336  71 -   3067355 AGAAACTCAGTACT-------GTAGGAAGGCG----------------------------GGAGGGAGGGAACATGGGACTAAAGAGGGTGAGAGAAAA-----AATAGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30056549  71 + 171630274 AGGAACTAAGTACT-------ATGGGAAGGAG----------------------------GGATGGAGGGAACATGAGACTAGAGAGGATGGGAGAAAA-----GCCAGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           204722  71 -    242197 AGGAACTAAGTACT-------ATGGGATGGAG----------------------------GGATGGAGGGAACAGGAGACTAGAGAGGATGGGAGAAAA-----GCCAGAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     197491  71 -   1771730 aggaACTAAGTACT-------ATGGGAAGGAG----------------------------GGATGGAGGGAACATGAGACTAGAGAGGATGGGAGAAAA-----GCCGGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     272474  71 -    457564 AGGAACTAAGTACT-------ATGGGAAGGAG----------------------------GGATGGAGGGAACACGAGACTAGAGAGGATGGGAGAAAA-----GCCAGAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            93036  42 +  18854210 GGGGACAGAGTCCT-------G--GGAGGATG----------------------------GCATGGTGGGGCCCTAGGA--------------------------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57915238  46 -  94987271 --AGTCGAAGTCCT-------G--------------------------------------------------CTTCTGTCTAGGGAGCCCGTGGGGAGA-----GCCAGA-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26213823 109 +  26524999 GGGAGCACAGTCCCCAGATGGAGGGGAAGAGGGCGGGGAAGGTTGGGGAGTACAATCCCTGGATGGAGGGGAGGAGGG--CAGGGAAGGTTGGGGAGCACCGTCCCTAGAC
i canFam3.chr35            I 8 I 17
s dasNov3.JH582591            21732  29 +    102524 ----------------------agggggcgag----------------------------gggtggaggg--------------gCGGGCGCG------------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                85925 164 + 123392446 I
e proCoq1.NW_012152574v1     581177  41 +    730504 I

a score=3547486.000000
s hg38.chr6_GL000254v2_alt   870248 204 +   4827813 CCTTACCTTGGGCACAAAGAGCACAACAAGAGTGATATAGGAGGAGAAAACTATGGCAAGAGAGGCAAAGGCAAAGGCTGCATCCTGCTGGCTGGACAGAATCATGGTGACAGGAGCAGTGATGAGGCACAGGACCTAGAGGGAA-------------------------AGACA-----CATTGA-GGGAG--TC------------------TCAGG------TCTGCA---GG-----------------------------------------------------------------------------CTCAGA------CAAGATCCAGAGTTTACTTCCC--
s panTro5.chr6             29832925 204 + 175400573 CCTTACCTTGGGCACGAAGAGCACAACAAGAGTGATATAGGAGGAGAAAACTATGGCAAGAGAGGCAAAGGCAAAGGCTGCATCCTGCTGGCTGGACAGAATCATGGTGACAGGAGCAGTGATGAGGCACAGGACCTACAGGGAA-------------------------AGACA-----CGTTGA-GGGAG--TC------------------TCAGG------TCTGCA---GG-----------------------------------------------------------------------------CTCAGA------CAAGATCCAGAGTTTACTTCCC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30067747 204 + 173848474 CCTTACCTTGGGCACGAAGAGCACAACAAGAGTGATATAGGAGGAGAAAACTATGGCAAGAGAGGCAAAGGCAAAGGCTGCATCCTGCTGGCTGGACAGAATCATGGTGACAGGAGCAGTGATGAGGCACAGGACCTAGAGGGAA-------------------------AGACA-----CGTTGA-GGGAG--TC------------------TCAGG------TCTGCA---GG-----------------------------------------------------------------------------CTCAGA------CAAGATCCAGAGTTTACTTCCC--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5874034 204 +   6154872 CCTTACCTTGGGCACAAAGAGCACAACAAGAGTGATATAGGAGGAGAAAACTATGGCAAGAGAGGCAAAGGCAAAGGCTGCATCCTGCTGGCTGGACAGAATCATGGTGACAGGAGCAGTGATGAGGCACAGGACCTAGAGGGAA-------------------------AGACA-----CGTTGA-GGGAG--TC------------------TCAGG------TCTGCA---GG-----------------------------------------------------------------------------CTCAGA------CAAGATCCAGAGTTTACTTCCC--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74582879 206 + 122973662 CCTCACCTTGGGCACAAAGAGCACAACAAGAGTGATATAGGAGGAGAAAACTATGGCAAGAGAGGCAAAGGCAAAGGCTGCATCCTGCTGGCTGGACAGAATCATGGTGACAGGAGCAGTGATGAGGCACAGGACCTAGAGGGAA-------------------------AGAAA-----CATTGA-GGGGGTCTC------------------TCAGG------TCTGCA---GG-----------------------------------------------------------------------------CTCAGA------CAAGATCCAGAGTTTACTTCCC--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30064091 204 + 172585720 CCTCACCTTGGGCACAAATAGCACAACAAGAGTAATATAGGAGGAGAAAACTATGGCAAGAGAGGCAAAGGCAAAGGCTGCATCCTGCTGGCTGGACAGAATCATGGTGACAGGAGCGGTGATGAGGCACAGGACCTAGAGGGAA-------------------------AGACA-----CATTGA-GGGAG--TC------------------TCAGG------TCTGCA---GG-----------------------------------------------------------------------------CTCAGA------CAAGATCCAGAGTTTACTTCCC--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29726935 204 - 170955103 CCTCACCTTGGGCACAAATAGCACAACAAGAGTAATATAGGAGGAGAAAACTATGGCAAGAGAGGCAAAGGCAAAGGCTGCATCCTGCTGGCTGGACAGAATCATGGTGACAGGAGCGGTGATGAGGCACAGGACCTAGAGGGAA-------------------------AGACA-----CATTGA-GGGAG--TC------------------TCAGG------TCTGCA---GG-----------------------------------------------------------------------------CTCAGA------CAAGATCCAGAGTTTACTTCCC--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2772354 204 -   2996164 CCTCACCTTGGGCACAAATAGCACAACAAGAGTAATATAGGAGGAGAAAACTATGGCAAGAGAGGCAAAGGCAAAGGCTGCATCCTGCTGGCTGGACAGAATCATGGTGACAGGAGCGGTGATGAGGCACAGGACCTAGAGGGAA-------------------------AGACA-----CATTGA-GGGAG--TC------------------TCAGG------TCTGCA---GG-----------------------------------------------------------------------------CTCAGA------CAAGATCCAGAGTTTACTTCCC--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     525982 204 +    766320 CCTCACCTTGGGCACAAAGAGCACAACAAGAGTAATATAGGAAGAGAAAACTATGGCAAGAGAGGCAAAGGCAAAGGCTGCATCCTGCTGGCTGGACAGAATCATGGTGACAGGAGCGGTGATGAGGCACAGGACCTAGAGGGAA-------------------------AGACA-----CATTGA-GGGAG--TC------------------TCAGG------TCTGCA---GG-----------------------------------------------------------------------------CTCAGA------CAAGATCCAGAGTTTACTTCCC--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28982827 204 -  71996105 CCTCACCTTGGGCACAAAGAGCACAACAAGAGTAATATAGGAGGAGAAAACTATGGCAAGAGAGGCAAAGGCAAAGGCTGCATCCTGCTGGCTGGACAGAATCATGGTGACAGGAGCGGTGATGAGGCACAGGACCTAGAGGGAA-------------------------AGACA-----CATTGA-GGGAG--TC------------------TCAGG------TCTGCA---GG-----------------------------------------------------------------------------CTCAGA------CAAGATCCAGAGTTTACTTCCC--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     158977 204 +    290775 CCTCACCTTGGGCACAAAGAGCACAACAAGAGTAATATAGGAAGAGAAAACTATGGCAAGAGAGGCAAAGGCAAAGGCTGCATCCTGCTGGCTGGACAGAATCATGGTGACAGGAGCGGTGATGAGGCACAGGACCTAGAGGGAA-------------------------AGACA-----CATTGA-GGGAG--TC------------------TCAGG------TCTGCA---GG-----------------------------------------------------------------------------CTCAGA------CAAGATCCAGAGTTTACTTCCC--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617407 204 -   3067355 CCTCACCTTGGGCACAAAGAGCACAACAAGAGTAATATAGGAGGAGAAAACTATGGCAAGAGAGGCAAAGGCAAAGGCTGCATCCTGCTGGCTGGACAGAATCATGGTGACAGGAGCGGTGATGAGGCACAGGACCTAGAGGGAA-------------------------AGACA-----CATCGA-GGGAG--TC------------------TCAGG------TCTGCA---GG-----------------------------------------------------------------------------CTCAGA------CAAGATCCAGAGTTTACTCCCC--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30056620 199 + 171630274 CCTCACCTTGGGCACAAAGAGCACAACAAGAGTAATATAGGAGGAGAAAACTATGGCAAGAGAGGCAAAGGCAAAGGCTGCATCCTGCTGGCTGGACAGAATCATGGTGACAGGGGCAGTGATGAGGCACAGGACCTAGAGGGAA-------------------------AGACA-----CAT-GA-G------TC------------------TCAGG------TCTGCA---AG-----------------------------------------------------------------------------CTCAAA------CAAGATCCAGAGTTTACTTCTC--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           204793 203 -    242197 CCTCACCTTGGGCACAAAGAGCACAACAAGAGTAATATAGGAGGAGAAAACTATGGCAAGAGAGGCAAAGGCAAAGGCTGCATCCTGCTGGCTGGACAGAATCATGGTGACAGGGGCGGTGATGAGGCACAGGACCTAGAGGGAA-------------------------AGACA-----CAT-GA-GGGAC--TC------------------TCAGG------TCTGCA---AG-----------------------------------------------------------------------------CTCAAA------CAAGATCCAGAGTTTACTTCCC--
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     197562 203 -   1771730 CCTCACCTTGGGCACAAAGAGCACAACAAGAGTAATATAGGAGGAGAAAACTATGGCAAGAGAGGCAAAGGCAAAGGCTGCATCCTGCTGGCTGGACAGAATCATGGTGACAGGGGCGGTGATGAGGCACAGGACCTAGAGGGAA-------------------------GGACA-----CAT-GA-GGGAG--TC------------------TCAGG------TCTGCA---AG-----------------------------------------------------------------------------CTCAAA------CAAGGTCCAGAGTTTACTCCCC--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     272545 203 -    457564 CCTCACCTTGGGCACAAAGAGCACAACAAGAGTAATATAGGAGGAGAAAACTATGGCAAGAGAGGCAAAGGCAAAGGCTGCATCCTGCTGGCTGGACAGAATCATGGTGACAGGGGCGGTGATGAGGCACAGGACCTAGAGGAAA-------------------------AGACA-----CAT-GA-AGGAG--TC------------------TCAGG------CCTGCA---AG-----------------------------------------------------------------------------CTCAAA------CAAGATCCAGAGTTTACTTCCC--
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                86089 204 + 123392446 CCTCACCTTGGGCACAAAGAGCACCACCAGAGTAATATAGGAGGAGAAAACTATGGCAAGAGAGGCAAAGGCGAAGGCTGCGTCCTGTTGGCTGGACAGAATCATGGTGACAGGGGCAGTGATGAGGCACAGGACCTAGAGGGAC-------------------------CGAGC-----AGGTTA-GCGAG--CC------------------TCAGA------TCTGCA---GG-----------------------------------------------------------------------------CTCAGA------CAAGATCCAGGGTCTTCTTCCC--
i micMur3.chr6             I 164 C 0
s proCoq1.NW_012152574v1     581218 205 +    730504 CCTCACCTTGGGCACAAAGAGCACAACCAAAGTAATGTAGGAGGAGAAAACTATGGCAAGAGAGGCAAAGGCGAAGGCTGCGTCCTGCTGGCTGGACAGAATCATGGTGACAGGGGCAGTGATGAGGCACAGGACCTAGAGGGAC-------------------------AGAGC-----GGGTTAGGGGAG--CC------------------TCAGA------TCTGTA---GG-----------------------------------------------------------------------------CTCAGA------CAAGATCCAGGGTCTTCTTCCC--
i proCoq1.NW_012152574v1   I 41 I 27
s otoGar3.GL873550            93078 204 +  18854210 CCTCACCTTGGGCACAAAGAGCACAACCAGAGTAATGTAGGAAGAGAAAACTATGGCAAGAGAGGCAAAGGCGAAGGCTGCATCCTGCTGGCTGGACAGAATCATGGTGACAGGGGCAGTGATGAGGCACAGGACCTAGAGAGAT-------------------------GGAAC-----AGGTTA-GGGAC--CC------------------TCAGA------TCTACA---GG-----------------------------------------------------------------------------CTCAGA------CAAGATCCAGGGTTTTCTTCTC--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57915284 203 -  94987271 CCTCACCTTAGGCACAAAGAGCACAACCAGAGTAATGTAGGAAGAGAACACAATGGCCAGAGAGGCAAAGGCGAAGGCTGCGTCCTGCTGGCTGGAAAGGATCATGGTGACAGGAGCGGTAATGAGACACAGGACCT----GGAA-------------------------AGACA-----GCATTT-GGGAG--AC------------------TCAGA------GCTATGAGTGG-----------------------------------------------------------------------------TTCAAG------TGAGATGCAGAGTTTTCTTCCT--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26213949 176 +  26524999 CCCCACCTTCGGCACGAACAGAACGACCAGAGTGATGTAGGAGGAGAACACTATGGCAAGAGCTGCAAAGGCGAAGGCTGCATCCTGCTGGCTGGACAGGATCATGGTGACCGGGGCAGTGATGAGGCACAGGACCTA----------------------------------------------TA-GGGGG--AC------------------CCA----------TGTG---GG-----------------------------------------------------------------------------ACC--------------TCTAGACTTTCCTCTCC--
i canFam3.chr35            I 17 C 0
s dasNov3.JH582591            21761 343 +    102524 CCTTACCTTGGGCACAAAGAGCACGACCAGAGTAATGTAGGAGGAGAAGACGATGGCCAGCGACGCGAAGGCGAAGGCGGCGTCCTGCTGGCTGGACAGGATCATGGTGACAGGCGCAGTGATGAGGCACAGGACCTGGTGGGGACGGGGGCGTCAGGGGGGACTTGGTGGGACAGAGGGCATCGG-GGGAA--CCCAGCGGGGCAGGGGGGCATCAGGGGGGACCCGGCG---GGGATGGGGGGCATGGGAGGGACTTGGTGGGACGGGGGCCATCAGGGTGGACCTGGTGGGGACGGGGGCATCAGTGGGTCTCAGATCTGGGCAAGACTCAAGGTCGTCTTCCCCC
i dasNov3.JH582591         C 0 C 0

a score=212971.000000
s hg38.chr6_GL000254v2_alt   870452 24 +   4827813 ATGGGAGGGAGTCTAT-GCAGACAG
s panTro5.chr6             29833129 24 + 175400573 ATGGGAGGGAGTCTAT-GCAGACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30067951 24 + 173848474 ATGGGAGGGAGTCTAT-GCAGACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5874238 24 +   6154872 ATGGGAGGGAGTCTAT-GCAGACAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74583085 24 + 122973662 ATGGGAGGGAGTCTAT-GCAGACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30064295 20 + 172585720 ATGGGAGGGAGCCTAT-G----CAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29727139 20 - 170955103 ATGGGAGGGAGCCTAT-G----CAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2772558 20 -   2996164 ATGGGAGGGAGCCTAT-G----CAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     526186 20 +    766320 ATGGGAGGGAGCCTAT-G----CAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28983031 20 -  71996105 ATGGGAGGGAGCCTAT-G----CAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     159181 20 +    290775 ATGGGAGGGAGCCTAT-G----CAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617611 24 -   3067355 ATGGGAGGGAGCCTAT-GCAGACAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30056819 24 + 171630274 ATGGGAGGAAACCTAT-GCAGACAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           204996 24 -    242197 AAAGGAGGAAACCTAT-GCAGACAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     197765 24 -   1771730 GTGTGAGGAAACCTAG-GCAGACAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     272748 24 -    457564 ATGGGAGGAAACCTAC-ACAGACAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                86293 20 + 123392446 ----CAGAGAGCCTAT-GAGGACAG
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550            93282 23 +  18854210 -CCAGAGAGAGTTTAT-GAGGACAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57915487 21 -  94987271 ---CTCAAGAGTCAGT-AAAGACAG
i mm10.chr17               C 0 I 10
s canFam3.chr35            26214125 23 +  26524999 -CAGAAGAGAGCCCAT-GAGAACAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            22104 20 +    102524 -----ATGGACCATCTCGAGGACAG
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     581423 27 +    730504 I

a score=1058617.000000
s hg38.chr6_GL000254v2_alt   870476 71 +   4827813 TTTCCTGGTGAACTTTCCCTTTGAAAAGGATCCAAATTCAGGATCATCCTCAAATATAGATTGAGAAAAAT
s panTro5.chr6             29833153 71 + 175400573 TTTCCTGGTGAACTTTCCCTTTGAAAAGGATCCAAATTCAGGATCATCCTCAAATATAGATTGAGAAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30067975 71 + 173848474 TTTCCTGGTGAACTTTCCCTTTGAAAAGGATCCAAATTCAGGATCATCCTCAAATATAGATTGAGAAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5874262 71 +   6154872 TTTCCTGGTGAACTTTCCCTTTGAAAAGGATCCAAATTCAGGATCATCCTCAAATATAGATTGAGAAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74583109 71 + 122973662 TTTCCGGGTGAACTTTCCCATTGAAAAGGATCCAAATTCAGGATCATCCTCAAATATAGACTGAGAAAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30064315 71 + 172585720 TTTCCTGGTGAACTTTCCCTTTGAAAAGGATCCAAATTCAGGATCATCCTGAAATACAGATTGAGAAAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29727159 71 - 170955103 TTTCCTGGTGAACTTTCCCTTTGAAAAGGATCCAAATTCAGGATCATCCTGAAATACAGATTGAGAAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2772578 71 -   2996164 TTTCCTGGTGAACTTTCCCTTTGAAAAGGATCCAAATTCAGGATCATCCTGAAATACAGATTGAGAAAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     526206 71 +    766320 TTTCCTGGTGAACTTTCCCTTTGAAAAGGATCCAAATTCAGGATCATCCTGAAATACAGATTGAGAAAAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28983051 67 -  71996105 TTTCCTGGTGAACTTTCCCTTTGAAAAGG----AAATTCAGGATCATCCTGAAATACAGATTGAGAAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     159201 71 +    290775 TTTCCTGGTGAACTTTCCCTTTGAAAAGGATCCAAATTCAGGATCATCCTGAAATACAGATTGAGAAAAAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617635 71 -   3067355 CTTCCTGGTGAACTTTCCCTTTGAAAAGGATCCAAATTCAGGATCATCCTGAAATACAGATTGAGAAAAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30056843 71 + 171630274 TTTGCTGGTGAACTTTCCCTTTGAAAAGGATCCAAATTCAGGATCCTCCTCAAATACAGATTGAGAAAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           205020 71 -    242197 TTTCCTGGTGAACTTTCCCTTTGAAAAGGATCCAAATTCAGGATCCTCCTCGAATACAGATTGAGAAAAAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     197789 71 -   1771730 TTTCCTGGTGAACTTTCCCTTTGAAAAGGATCCAAATTCAGGATGCTCCTCAAATACAGATTGAGAAAAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     272772 71 -    457564 TTTCCTGGTGAACTTTCCCTTTGAAAAGGATCCAAATTCAGGATCCTCCTCAAATACAGATTGAGAAAAAT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                86313 71 + 123392446 AGCCCTGGTGAACTTTCCATTTGAAAAGAATCCAAATTCAGGATCATCCTCAAATCCAGATTGAGAAGAAT
i micMur3.chr6             C 0 I 337
s proCoq1.NW_012152574v1     581450 71 +    730504 CTTCCCGGTGAACTTTCCATTTGAAAAGAATCCAAATTCAGGGTCATCCTCAAATCTAGACTGAGAATAAT
i proCoq1.NW_012152574v1   I 27 C 0
s otoGar3.GL873550            93305 71 +  18854210 AGTTCTAGTGAACTTTCCATTTGAAAAGAATCCAAATTCAGGACAGTCCTCAAACCTAGATTGAGAAAAAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57915518 62 -  94987271 CACTCTGCAAATCCTCACCTTTAAATAG---CTaaaaaaaaaaaaa-----aaaaaaaaaaaaaaaaaaa-
i mm10.chr17               I 10 C 0
s canFam3.chr35            26214148 71 +  26524999 GTCCTGGGGGAACTTCCCATCTGAAAACGGTCCAAACTTGAGGCCACCCTCAACTCCCAAAAGGGAAGAAT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            22124 66 +    102524 CGTGCTGGTGGCCTTCCCATGTGAAGAGGATCTGGATCTGAGG---TCCTCAACTCCAGA--GGGAAGAAC
i dasNov3.JH582591         C 0 C 0

a score=449650.000000
s hg38.chr6_GL000254v2_alt   870547 48 +   4827813 CTC---------------AAACTGTCCCAAACCAGTTTTCA-CTCTTGGTTAACCCCTCCCC-------------TC
s panTro5.chr6             29833224 48 + 175400573 CTC---------------AAATTGTCTCAAACCAGTTTTTA-CTCTTGGTTAGCCCCTCCCC-------------TC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30068046 48 + 173848474 CTC---------------AAATTGTCTCAAACCAGTTTTTA-CTCTTGGTTAGCCCCTCCCC-------------TC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5874333 48 +   6154872 CTC---------------AAACTGTCCCAAACCAGTTTTCA-CTCTTGGTTAACCCCTCCCC-------------TC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74583180 47 + 122973662 CTC---------------AGATTGTCCCAAACCAGTTTTCA-CTCTTGGTTAA-CCCTCCCC-------------TC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30064386 48 + 172585720 CTC---------------AAACGGTCCCAAACCAGTTTTCA-CTCTTGGTTGACCATTCCCC-------------TC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29727230 48 - 170955103 CTC---------------AAACGGTCCCAAACCAGTTTTCA-CTCTTGGTAGACCATTCCCC-------------TC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2772649 48 -   2996164 CTC---------------AAACGGTCCCAAACCAGTTTTCA-CTCTTGGTTGACCATTCCCC-------------TC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     526277 48 +    766320 CTC---------------AAACTGTCCCAAACCAGTTTTCA-CTCTTGGTTGACCACTCCCC-------------TC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28983118 48 -  71996105 CAC---------------AAACTGTCCCAAACCAGTTTTCA-CTCTTGGTTGACCACTCCCC-------------TC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     159272 48 +    290775 CTC---------------AAACTGTCCCAAACCAGTTTTCA-CTCTTGGTTGACCACTCCCC-------------TC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617706 48 -   3067355 CTC---------------AAACTGTCCCAAACCAGTTTTCA-CTCTTGGTTGACCACTCCCC-------------TC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30056914 61 + 171630274 CCC---------------AAGGTCTCCCAAACCAGCCTCCA-CTCTTGGTTAACAACACCCCCACCTCCACCACTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           205091 61 -    242197 CCC---------------AAGCTGTCCCAAACCAGTCTCCA-CTCTTGGTTAACAAACCCCCCACCTCCGCCGCCTC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     197860 61 -   1771730 CCC---------------AAGCTGTCCCAAACCAGTCTCCA-CTCTTGGTTAACAAACCTCCCACCTCTGCCACCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     272843 61 -    457564 CCC---------------AAGCTGTCCCAAACCCGTCTCCA-CTCTTGGTTAACAAGTCCCCCACCTCAGCCACCTC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     581521 52 +    730504 CCCAA-----------ATAAACTGCCCCAAACCAGTTCCCAGCTCTAGGTCAACCCCTCCC--------------TC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            93376 48 +  18854210 CCCA--------------AAACTGCTACACACCAGGTCCCAGCTCTAGGTCAA-CCCTCCC--------------TC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57915580 58 -  94987271 ----aggaaaTCAGAGATAAGCTA--CCAAACCAGCTCTCAGCTCTAGATCAATGCCTCCCT-------------TC
i mm10.chr17               C 0 I 723
s canFam3.chr35            26214219 37 +  26524999 -------------------------CCCAAACCACGTCCCG-CTCTAGGCCAACCCCTCCC--------------TC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            22190 51 +    102524 ------------CCCTTGTAGCCGTCCCTAGCCCCTCCCTG-CTCTCGGTCAGCCGCTCCCC-------------CC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                86384 337 + 123392446 I

a score=140829.000000
s hg38.chr6_GL000254v2_alt   870595 9 +   4827813 AAGGCAGGA
s panTro5.chr6             29833272 9 + 175400573 AAGGCAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30068094 9 + 173848474 AAGGCAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5874381 9 +   6154872 AAGGCAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74583227 9 + 122973662 AAGGCAGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30064434 9 + 172585720 AAGGCAGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29727278 9 - 170955103 AAGGCAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2772697 9 -   2996164 AAGGCAGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     526325 9 +    766320 AAGGCAGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28983166 9 -  71996105 AAGGCAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     159320 9 +    290775 AAGGCAGGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617754 9 -   3067355 AAGGCAGGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30056975 9 + 171630274 AACGCAGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           205152 9 -    242197 AAGGCAGGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     197921 9 -   1771730 AAGGCAGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     272904 9 -    457564 AAGGCAGGA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     581573 9 +    730504 AGGGCAGGG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            93424 9 +  18854210 AGGGCAGGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26214256 9 +  26524999 CAGGCAGAG
i canFam3.chr35            C 0 I 57
s dasNov3.JH582591            22241 8 +    102524 -AGGCAGGA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                86384 337 + 123392446 I
e mm10.chr17               57915638 723 -  94987271 I

a score=282023.000000
s hg38.chr6_GL000254v2_alt   870604 21 +   4827813 ACTCCCAGGAT-CTCTATGCAC
s panTro5.chr6             29833281 21 + 175400573 ACTCCCAGGAT-CTCTATGCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30068103 21 + 173848474 ACTCCCAGGAT-CTCTATGCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5874390 21 +   6154872 ACTCCCAGGAT-CTCTATGCAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74583236 21 + 122973662 ACTCCCAGGAT-CTCTATGCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30064443 21 + 172585720 ACTCCCAGGAT-CTCTATGCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29727287 21 - 170955103 ACTCCCAGGAT-CTCTATGCAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2772706 21 -   2996164 ACTCCCAGGAT-CTCTATGCAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     526334 21 +    766320 ACTCCCAGGAT-CTCTATGCAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28983175 21 -  71996105 ACTCCCAGGAT-CTCTATGCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     159329 21 +    290775 ACTCCCAGGAT-CTCTATGCAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617763 21 -   3067355 ACTCCCAGGAT-CTCTATGCAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30056984 21 + 171630274 ACTCCCAGGAT-CTCTATGCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           205161 21 -    242197 ACTCCCAGGAT-CTCTATGCAC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     197930 21 -   1771730 ACTCCCAGGAT-CTCTATGCAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     272913 21 -    457564 ACTCCCAGGAT-CTCTATGCAC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     581582 21 +    730504 ATTCCCAGGGT-CCACATGCCC
i proCoq1.NW_012152574v1   C 0 I 23
s otoGar3.GL873550            93433 22 +  18854210 ATGCCCAGGATATCTTATGCAT
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            22249 19 +    102524 GCTCCT--GGT-CTCTACACAC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                86384 337 + 123392446 I
e mm10.chr17               57915638 723 -  94987271 I
e canFam3.chr35            26214265 57 +  26524999 I

a score=236177.000000
s hg38.chr6_GL000254v2_alt   870625 25 +   4827813 AGATTCCGGGTCCTCCAGAGTCGG----------T
s panTro5.chr6             29833302 25 + 175400573 ACATTCCGGGTCCTCCATAGTCGG----------T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30068124 25 + 173848474 ACATTCCGGGTCCTCCATAGTCGG----------T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5874411 25 +   6154872 AGATTCCGGGTCCTCCAGAGTCGG----------T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74583257 25 + 122973662 ACATTCCAGGTCCTCCAGAGTCGG----------T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30064464 25 + 172585720 ACATTCCAGGTCCTCCAGAGTCGG----------T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29727308 25 - 170955103 ACATTCCAGGTCCTCCAGAGTCGG----------T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2772727 25 -   2996164 ACATTCCAGGTCCTCCAGAGTCGG----------T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     526355 25 +    766320 ACATTCCAGGTCCTCCAGAATCGG----------T
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28983196 25 -  71996105 ACATTCCAGGTCCTCCAGAGTCAG----------T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     159350 25 +    290775 ACATTCCAGGTCCTCCAGAATCGG----------T
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617784 25 -   3067355 ACATTCCAGGTCCTCCAGAGTCGG----------T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30057005 35 + 171630274 ACATTCTAGGTCCTCCAGAGTCAGTCCCTGAGGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           205182 35 -    242197 ACATTCTAGGTCCTCCAGAGTCAGTCCCTGAGGAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     197951 35 -   1771730 ACATTCTAGGTCCTCCAGAGTCAGTCCCTGAGGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     272934 35 -    457564 ACATTCTAGGTCCTCCAGAGTCAGTCCCTGAGGAT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            93455 25 +  18854210 ACATTCCAGGTTTTCAAGAATCAG----------T
i otoGar3.GL873550         C 0 I 10
s dasNov3.JH582591            22268 17 +    102524 ---AGCCAG--TCTGCAGAGTC-------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                86384 337 + 123392446 I
e mm10.chr17               57915638 723 -  94987271 I
e proCoq1.NW_012152574v1     581603 23 +    730504 I
e canFam3.chr35            26214265 57 +  26524999 I

a score=2076871.000000
s hg38.chr6_GL000254v2_alt   870650 189 +   4827813 CCCTGGCAGGAAATGTCAA--TAG-------AGTCCAGCCCATtaaccacagacaagcaatttaacgtctctgtgtttctgtttcctcacctataaagtggggatactaatatcta-cttcactgggtagttgc---aagattaatgatacaatgtctgt-agtgagctttgtaaac-----tgtaaagtgctttatagacctgaaga
s panTro5.chr6             29833327 190 + 175400573 CCCTGGCAGGAAATGTCAA--TAG-------AGTCCAGCCCATtaaccacagacaagcaatttaatgtctctgtgtttctgtttcctcacctataaagtggggatactaatatcta-cttcactgggtagttgc---aagattagtgatacaatgtctgtaagtgagctttgtaaac-----tgtaaagtgctttatagacctgaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30068149 190 + 173848474 CCCTGGCAGGAAATGTCAA--TAG-------AGTCCAGCCCATtaaccacagacaagcaatttaatgtctctgtgtttctgtttcctcacctataaagtggggatactaatatcta-cttcactgggtagttgc---aagattagtgatacaatgtctgtaagtgagctttgtaaac-----tgtaaagtgctttatagacctgaaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5874436 189 +   6154872 CCCTGGCAGGAAATGTCAA--TAG-------AGTCCAGCCCATtaaccacagacaagcaatttaacgtctctgtgtttctgtttcctcacctataaagtggggatactaatatcta-cttcactgggtagttgc---aagattaatgatacaatgtctgt-agtgagctttgtaaac-----tgtaaagtgctttatagacctgaaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74583282 189 + 122973662 CCCTGGCAGGAAATGTCAA--TAC-------AGTCCAGCCCATtaaccacagacaagcaatttaacttctctgtgtttctgtttcctcacctataaagtggggatactaatatcta-cttcatcgggtagttgc---aagataaatgatacaatgtctgt-agtgagctttgtaaac-----tgtaaagtgctttataaacctgaaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30064489 189 + 172585720 CCCTGGTAGGAAATGTCAA--CAG-------AGTCCAGTCCATCAaccacagacaagcaatttaacttctctgtgtttttgttttctcacctataaagtagggatactaatatcta-cttcattgggtagctgt---aagattaatgatacaatgtctac-agtgagcttagtaaac-----tgtaaagtgctttgtaaacctgaaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29727333 189 - 170955103 CCCTGGTAGGAAATGTCAA--CAG-------AGTCCAGTCCATCAaccacagacaagcaatttaacttctctgtgtttttgttttctcacctataaagtagggatactaatatcta-cttcattgggtagctgt---aagattaatgatacaatgtctac-agtgagcttagtaaac-----tgtaaagtgctttgtaaacctgaaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2772752 189 -   2996164 CCCTGGTAGGAAATGTCAA--CAG-------AGTCCAGTCCATCAaccacagacaagcaatttaacttctctgtgtttttgttttctcacctataaagtagggatactaatatcta-cttcattgggtagctgt---aagattaatgatacaatgtctac-agtgagcttagtaaac-----tgtaaagtgctttgtaaacctgaaga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     526380 189 +    766320 CCCTGGTAGGAAATGTCAA--CAG-------AGTCCAGTTCATCAaccacagacaagcaatttaacttctctgtgtttttgtttcctcacctataaagtagggatactaatatcta-cttcattgggtagctgt---aagattaatgatacaatgtctac-agtgagcttagtaaac-----tgtaaagtgctttgtaaacctgaaga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28983221 189 -  71996105 CCCTGGTAGGAAATGTCAA--CAG-------AGTCCAGTCCATCAaccacagacaagcaatttaacttctctgtgtttttgtttcctcacctataaagtggggatactaatatcta-cttcattgggtagctgt---aagattaatgatacaatgtctac-agtgagcttagtaaac-----tgtaaagtgctttgtaaacctgaaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     159375 189 +    290775 CCCTGGTAGGAAATGTCAA--CAG-------AGTCCAGTTCATCAaccacagacaagcaatttaacttctctgtgtttttgtttcctcacctataaagtagggatactaatatcta-cttcattgggtagctgt---aagattaatgatacaatgtctac-agtgagcttagtaaac-----tgtaaagtgctttgtaaacctgaaga
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617809 189 -   3067355 CCCTGGTAGGAAATGTCAA--CAG-------AGTCCAGTCCATCAaccacagacaagcaatttaacttctctgtgtttctgtttcctcacctataaagtggggatactaatatcta-cttcattgggtagctgt---aagattaatgatacaatgtctac-agtgagcttagtaaac-----tgtaaagtgctttgtaaacccgaaga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30057040 189 + 171630274 CCCTGGCAGGAACTATCAA--CAG-------AGTCCACCCTATGAACCACAGACAAGCGA---aacttctctgtgtttctgtttcctcacctataaagcagggatactaataccta-cttcactgggtagttgcaagaagattaatgagacagtatctgt-agtgggctttgtaaac-----tgtaaagtgccttatgaaCTTGCAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           205217 189 -    242197 CCCTGGCAGGAACTGTCAA--CAG-------AGTCCACCCTATAAaccacagacaagtga---aacttctctgtgtttctgtttcctcacctatgaagcagggatactaataccta-cttcactgggtagttgcaagaagattaatgagacactgtctgt-agcgggctttgtaaac-----tgtaaagtgctttataaaCCTGCAGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     197986 189 -   1771730 CCCTGGCAGGGACTGTCAA--CAG-------AGTCCACCCTATAAACCACAGATAAGTGA---aacttctctgtgtttctgtttcctcacctatgaagcagggatactaatatcta-attcactgggtagttgcaagaagattaatgagacaatgtctgt-agcaggctttgtaaac-----tgtaaagtgctttataaaCCTGCAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     272969 188 -    457564 CCCTGGCAGGAACTGTCAA--CAG-------AGTCCACCCTATAAaccacagacaagtga---aacttctctgcg-tactgtttcctcacctataaagcagggatactaataccta-cttcactgggtagttgcaagaagattaatgagataatgtctgt-agcaggctttgtaaac-----tgtaaagtgctttataaaCCTGAAGA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     581626 185 +    730504 AGCCGGCAGGAAATCTCAATTCAG-------AGTCCAG--------CCATGAACCAGAACTttcacttctctgtgtttctgcttccccacctatacggtg-aggtaccaacaccta-cttcac----tggctgcaagaagatgaataatataatgtctgt-agtg-gctttacagactataatataaagtgctttataaatctgaggc
i proCoq1.NW_012152574v1   I 23 C 0
s otoGar3.GL873550            93490 170 +  18854210 AGCTGGCAGAAAATCACAAGTCAG-------AGTCTAGC-------CCACAAACCagtaatttaacttct-----gttttgtttcctcacctataaagtgtgggtaccaataccta-cttcat----tagttgcaaggagatgaataacataatgcctat-actt-actt------------tataaagtactttataaatatgaggc
i otoGar3.GL873550         I 10 C 0
s canFam3.chr35            26214322 186 +  26524999 ccctgggaggaagttgact--caa-------atcccagccagggagccacatacaagcactgtaaggtct--gtgtttctgcttcctcacctgtgtagggggaacactaaggtctg-cttcat-gggtggtcat--ggagagttaaga-agagtgtctgt-cgtgcgctttaccaac-----tgtaaactgctttacaaacctgaggc
i canFam3.chr35            I 57 C 0
s dasNov3.JH582591            22285 173 +    102524 CACAGGCCCAGGACCTCCATTCAGGACCCCTGGGCCAGCCTGTGGACCA-GGACAAG--GTTGAGCCTCGCGGTGGTTC--ACGCCTCCGCTATGAAGCCAGACGCCCCGTCTATGCCTTCACCCGG--GGTGCGTGGGGGTTAA----------------AGAGAGC-------GC-----TGCAGCTGGCTGTACAAAGCCAGGGC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                86384 337 + 123392446 I
e mm10.chr17               57915638 723 -  94987271 I

a score=177136.000000
s hg38.chr6_GL000254v2_alt   870839 15 +   4827813 a-ttaACAAACTTTTT-
s panTro5.chr6             29833517 15 + 175400573 a-ttaACAAACTTTTT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30068339 15 + 173848474 a-ttaACAAACTTTTT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5874625 15 +   6154872 a-ttaACAAACTTTTT-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74583471 15 + 122973662 a-ttaACAAACTTTTT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30064678 15 + 172585720 a-ttaACAAACTTTTT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29727522 15 - 170955103 a-ttaACAAACTTTTT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2772941 15 -   2996164 a-ttaACAAACATTTT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     526569 15 +    766320 a-ttaACAAACTTTTT-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28983410 15 -  71996105 a-ttaACAAACTTTTT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     159564 15 +    290775 a-ttaACAAACTTTTT-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2617998 15 -   3067355 a-ttaACAAACTTTTT-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30057229 15 + 171630274 T-TAAACAAACTTTTT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           205406 15 -    242197 T-TAAACAAACTTTTT-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     198175 15 -   1771730 T-TAAATAAACttttt-
i cebCap1.NW_016107755v1   C 0 I 613
s aotNan1.NW_018509740v1     273157 15 -    457564 T-TAAACAAACTTTTT-
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     581811 15 +    730504 a-ttaACAAGCTTTCT-
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            93660 16 +  18854210 agttaACAAACTATTT-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57916361 15 -  94987271 A-TTAGCCAGTGTTTT-
i mm10.chr17               I 723 C 0
s canFam3.chr35            26214508 13 +  26524999 a-ttaACAAATTCT---
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            22458 15 +    102524 --TTGGGAAACCCTCCT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                86384 337 + 123392446 I

a score=759645.000000
s hg38.chr6_GL000254v2_alt   870854 69 +   4827813 AAGACTTCTAAGC-AACCGATCCCAGATCTAGCA--TTGATTCTTCCTAGTCCTCTATATCTGGGCTGCTGT--
s panTro5.chr6             29833532 69 + 175400573 AAGACTTCTAAGC-AACCGATCCCAGATCTAGCA--TTGATTCTTCCTAGTCCTCTATATCTGGGCTGCTGT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30068354 69 + 173848474 AAGACTTCTAAGC-AACCGATCCCAGATCTAGCA--TTGATTCTTCCTAGTCCTCTATATCTGGGCTGCTGT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5874640 69 +   6154872 AAGACTTCTAAGC-AACCGATCCCAGATCTAGCA--TTGATTCTTCCTAGTCCTCTATATCTGGGCTGCTGT--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74583486 69 + 122973662 AAGACTTCTAAGC-AACCGATGCCAGATCTAGCA--TTGATTCTTCCTAGTCCGCCACATCTGGGCTGCAGT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30064693 69 + 172585720 AAGACTCCTAAGC-AACCGATCCCAGATCTAGCA--TTGATTCTTCCTAGTCCATCACATCTGGGCTGTGGT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29727537 69 - 170955103 AAGACTCCTAAGC-AACCGATCCCAGATCTAGCA--TTGATTCTTCCTAGTCCATCACATCTGGGCTGTGGT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2772956 69 -   2996164 AAGACTCCTAAGC-AACCGATCCCAGATCTAGCA--TTGATTCTTCCTAGTCCATCACATCTGGGCTGTGGT--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     526584 69 +    766320 AAGACTCCTAAGC-AACAGATCCCAGATCTAGCA--TTGATTCTTCCTAGTCCATCACATCTGGGCTGTGGT--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28983425 69 -  71996105 AAGACTCCTAAGC-AACCGATCCCAGATCTAGCA--TTGATTCTTCCTAGTCCATCACATCTGGGCTGTGGT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     159579 69 +    290775 AAGACTCCTAAGC-AACAGATCCCAGATCTAGCA--TTGATTCTTCCTAGTCCATCACATCTGGGCTGTGGT--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2618013 69 -   3067355 AAGACTCCTAAGC-AACCGATCTCAGATCTAGCA--TTGATTCTTCCTAGTTCATCACATCTGGGCTGCAGT--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30057244 69 + 171630274 AAGACTCCTAAGC-AACTGATCCCAGATCTAGCA--CTGATTCTTCCTAGTCTACCACATCTGGGCGGCAGA--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           205421 69 -    242197 AAGACTTCTAAGC-AACCGATCCCACATCTAGCA--CTGATTCTTCCTAGTCTACCACATCTGGGCTGCAGT--
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     198803 68 -   1771730 aaGACTTCTAAGC-AACAGATCCCAGAT-TAGCA--CTGATTCTTCCTAGTCTATCACATTTGGGCTGCAGT--
i cebCap1.NW_016107755v1   I 613 C 0
s aotNan1.NW_018509740v1     273172 69 -    457564 AAGACTTCTAAGC-AACAGATCCCAGATCTAGCA--CTGATTCTTCCTAGTCTACCACATCTGGGCTGCAGT--
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     581826 54 +    730504 AAGACTTTCATGG-AACTGATCCCAGATCTAGGG-CCTGACTCTTCCC---------------GGTTGCGC---
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            93676 70 +  18854210 AAGACTTCCATGT-GACTGATCTCAGATCTAGGG-CCTGATTTTTCCCTGTCTACCACATCTAGGTTGCAGT--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57916376 72 -  94987271 ATGACTCCTACACAAAACAATCTCAGATCTAATTTTCTGAATCTTCTAGTTCTATCACGTTAACCATGCCAT--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26214521 43 +  26524999 AAAGATGCCCAGC-CACTGGTCCC------AGCC--CTGATTCCTCCCAGGC----------------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            22473 69 +    102524 AAGACGTCCACCC-AGCTGATG-CGGACCTCCTG--GCGGCTCGGCCACCTCC-CCACGTCCGGGTGGCTCGGG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                86384 337 + 123392446 I

a score=4476159.000000
s hg38.chr6_GL000254v2_alt   870923 252 +   4827813 GGTCAGCCTACAGGGTCAATGCCATGGGGTCA---G--TGCTCACTGCCACATTGTAGATAGCCATGCCCACAGCCCGGTGATCATTGATCTTCTCAGTGGACACACTCTTGGTCTCATAAGCAAGGAAGATTCCCAGCAGCAGCAGCAGCCCCTTGTAACCATAGAAAATGCCTAGGATGGCAGGAGAGAGTCACTTGAGCAACAAGGACCACAATGCTCCTCACTC-AATCCCCATCCCCTCTCTGCCCTTCA---------------CCT
s panTro5.chr6             29833601 252 + 175400573 GGTCAGCCTACAGGGTCAATGCCATGGGGTCA---G--TGCTCACTGCCACATTGTAGATAGCCATGCCCACAGCCCGGTGATCATTGATCTTCTCAGTGGACACACTCTTGGTCTCATAAGCAAGGAAGATTCCCAGCAGCAGCAGCAGCCCCTTGTAACCATAGAAAATGCCTAGGATGGCAGGAGAGAGTCACTTGAGCAACAAGGACCACAATGCTCCTCACTC-AATCCCCATCCCCTCTCTGCCCTTCA---------------CCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30068423 252 + 173848474 GGTCAGCCTACAGGGTCAATGCCATGGGGTCA---G--TGCTCACTGCCACATTGTAGATAGCCATGCCCACAGCCCGGTGATCATTGATCTTCTCAGTGGACACACTCTTGGTCTCATAAGCAAGGAAGATTCCCAGCAGCAGCAGCAGCCCCTTGTAACCATAGAAAATGCCTAGGATGGCAGGAGAGAGTCACTTGAGCAACAAGGACCACAATGCTCCTCACTC-AATCCCCATCCCCTCTCTGCCCTTCA---------------CCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5874709 252 +   6154872 GGTCAGCCTACAGGGTCAATGCCATGGGGTCA---G--TGCTCACTGCCACATTGTAGATAGCCATGCCCACAGCCCGGTGATCATTGATCTTCTCAGTGGACACACTCTTGGTCTCATAAGCAAGGAAGATTCCCAGCAGCAGCAGCAGCCCCTTGTAACCATAGAAAATGCCTAGGATGGCAGGAGAGAGTCACTTGAGCAACAAGGACCACAATGCTCCTCACTC-AATCCCCATCCCCTCTCTGCCCTTCA---------------CCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74583555 252 + 122973662 GGTCAGCCTACAGGGTCAATGCCATGGGGTCA---G--TGCTCACTGCCACGTTGTAGATAGCCATGCCCACAGCCCGGTGATCATTGATCTTCTCAGTGGACACACTCTTGGTCTCATAAGCAAGGAAGATTCCCAGCAGCAGCAGCAGCCCCTTGTAACCATAGAAAATGCCTAGGATGGCAGGAGAGAGTCACTTGAGCAACAAGGACCACAATGCTCCTCACTC-AATCCCCATCCCCTCTCTGCCCTTCA---------------CCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30064762 252 + 172585720 GGTCAACCCACAGGGTCAATGCCAGGGGGTCA---A--TGCTCACGGCCACATTGTAGATAGCCATGCCTACAGCCCGGTGGTCATTGATCTTCTCAGTGGACACACTCTTGGTCTCATAAGCAAGGAAGATTCCCAGCAGCAGCAGCAGTCCCTTGTAACCATAGAAAATGCCTAGAATGGCAGGAGAGAGTCACTTGAGCAACAAGGACCACAACGCTCCTCACTC-AATCCCCGTCCCCTCTCTGCCCTTCA---------------CCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29727606 252 - 170955103 GGTCAACCCACAGGGTCAATGCCAGGGGGTCA---A--TGCTCACGGCCACATTGTAGATAGCCATGCCTACAGCCCGGTGGTCATTGATCTTCTCAGTGGACACACTCTTGGTCTCATAAGCAAGGAAGATTCCCAGCAGCAGCAGCAGTCCCTTGTAACCATAGAAAATGCCTAGAATGGCAGGAGAGAGTCACTTGAGCAACAAGGACCACAACGCTCCTCACTC-AATCCCCGTCCCCTCTCTGCCCTTCA---------------CCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2773025 252 -   2996164 GGTCAACCCACAGGGTCAATGCCAGGGGGTCA---A--TGCTCACGGCCACATTGTAGATAGCCATGCCTACAGCCCGGTGGTCATTGATCTTCTCAGTGGACACACTCTTGGTCTCATAAGCAAGGAAGATTCCCAGCAGCAGCAGCAGTCCCTTGTAACCATAGAAAATGCCTAGAATGGCAGGAGAGAGTCACTTGAGCAACAAGGACCACAACGCTCCTCACTC-AATCCCCGTCCCCTCTCTGCCCTTCA---------------CCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     526653 252 +    766320 GGTCAACCCACAGGGTCAATGCCAGGGGGTCA---A--TGCTCACGGCCACATTGTAGATAGCCATGCCTACAGCCCGGTGGTCATTGATCTTCTCAGTGGACACACTCTTGGTCTCATAAGCAAGGAAGATTCCCAGCAGCAGCAGCAGTCCCTTGTAACCATAGAAAATGCCTAGAATGGCAGGAGAGAGTCACTTGAGCAACAAGGACCACAACGCTCCTCACTC-AATCCCCGTCCCCTCTCTGCCCTTCA---------------CCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28983494 252 -  71996105 GGTCAACCCACAGGGTCAATGCCAGGGGGTCA---A--TGCTCACGGCCACATTGTAGATAGCCATGCCTACAGCCCGGTGGTCATTGATCTTCTCAGTGGACACACTCTTGGTCTCATAAGCAAGGAAGATTCCCAGCAGCAGCAGCAGTCCCTTGTAACCATAGAAAATGCCTAGAATGGCAGGAGAGAGTCACTTGAGCAACGAGGACCACAACGCTCCTCATTC-AATCCCCGTCCCCTCTCTGCCCTTCA---------------CCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     159648 252 +    290775 GGTCAACCCACAGGGTCAATGCCAGGGGGTCA---A--TGCTCACGGCCACATTGTAGATAGCCATGCCTACAGCCCGGTGGTCATTGATCTTCTCAGTGGACACACTCTTGGTCTCATAAGCAAGGAAGATTCCCAGCAGCAGCAGCAGTCCCTTGTAACCATAGAAAATGCCTAGAATGGCAGGAGAGAGTCACTTGAGCAACAAGGACCACAACGCTCCTCACTC-AATCCCCGTCCCCTCTCTGCCCTTCA---------------CCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2618082 252 -   3067355 GGTCAGCCCACAGGGTCGATGCCAGGGGGTCA---A--TGCTCACGGCCACATTGTAGATAGCCATGCCTACAGCCCGGTGGTCATTGATCTTCTCAGTGGACACACTCTTGGTCTCATAAGCAAGGAAGATTCCCAGCAGCAGCAGCAGTCCCTTGTAACCGTAGAAAATGCCTAGAATGGCAGGATAGGGTCACTTGAGCAACAAGGACCACAATGCTCCTCACTC-AATCCCCATCCCCTCTCTGCCCTTCA---------------CCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30057313 250 + 171630274 AGTCAGCCCACAGGGTCAATGCCATGGGGTCA---A--TGCTCACTGCCACATTGTAGATAGCCATGCCCACGGCCCGGTGATCGTTGATCTTCTCAGTGGACACACTCTTAGTCTCGTAAGCAAGAAAGATTCCCAGCAGCAGCAGCAGCCCTTTGTAACCATAGAAAATGCCTAGGACAGCAG--AAGAGTCACTTGAGCAACAAGGACCACAACATTCCTCACTC-CATCCCCATCTTCTCTCTGCCCTTTA---------------CCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           205490 252 -    242197 AGTCAGCCCACAGAGTCAATGCCATGGGGTCA---A--TGCTCACTGCCACATTGTAGATAGCCATGCCCACGGCCCGGTGATCGTTGATCTTCTCAGTAGACACACTCTTAGTCTCGTAAGCAAGAAAGATTCCCAGCAGCAGCAACAGCCCCTTGTAACCATAGAAAATGCCTAGGATGGCAGGAGAGAGTCACGTGAGCAACAAGGACCACAATGCTCCTCACTC-TATCCCCATCCTCTCTCTGCCCTTCA---------------CCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     198871 251 -   1771730 AGTCAGCCCACAGGGTCAATGCCATGGGGTCA---A--TGCTCACTGCCACATTGTAGATAGCCATGCCCACGGCCCGGTGATCGTTGATCTTCTCAGTGGACACACTCTTAGTCTCGTAAGCAAGAAAGATTCCCAGCAGCAGCAACAGCCCCTTGTAACCATAGAAAATGCCTAGGATGGCAGG-GAGAGTCACTTGAGCAACAAGGGCCACAATGCTCCTCACTC-TATCCCCGTCCTCTCTCTGACCTTCA---------------CCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     273241 252 -    457564 AGTCAGCCCACAGGGTTAATGCCATGGGGTCA---A--TGCTCACTGCCACATTGTAGATAGCCATGCCCACGGCCCGGTGATCGTTGATCTTCTCAGTGGACACGCTCTTAGTCTCGTAAGCAAGAAAGATTCCCAGCAGCAGCAACAGCCCCTTGTAACCATAAAAAATGCCTAGGATGGCAGGAGAGAGTCACTTGAGCAACAAGGACCAAAATGCTCCTCACTC-CATCCCCATCCTCTCTCTGCCCTTCA---------------CCT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                86721 252 + 123392446 GGTCAGCCCCCAGGGTCAATGCCATGGGGCCA---G--TGCTCACCGCCACATTGTAGATGGCCATGCCCACAGCTCGGTGGTCATTGATCTTTTCAGTGGACACGCTCTTGGTCTCATAAGCAAGAAAGATTCCCAGCAGCAGCAGCAGCCCCTTGTACCCATAGAAAATGCCTATGGTGGCAAGAAAGGGTCACCTGGGCAACAAGGACCTCCACACTCCCCACTC-AACCCCCGTCCTCTCTCTGCCCTTCA---------------CCT
i micMur3.chr6             I 337 I 33
s proCoq1.NW_012152574v1     581880 250 +    730504 -GTCAGCCCACAGGGTCGATGGCA-GGGGCCA---G--TGCTCACCGCCACATTGTAGATGGCCATGCCCACAGCTCGGTGGTCATTGATCTTCTCAGTGGACACACTCTTGGTCTCATAAGCAAGAAAGATTCCCAGCAGCAGCAGCAGCCCCTTGTAACCATAGAAAATGCCTAGGGTGGTAGGAAAGGGTCACCTGGGCAACGAGGACCTCAGCGCTCCCCACTC-AGTCCTCGTCCTCTCTCTGCCCTTCA---------------CCT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            93746 250 +  18854210 GGTCAGTCCCC-GGATCAATGCCATGGGGTCA------TGCTCACCGCCACATTGTAGATGGCCATGCCTACAGCTCGGTGGTCATTGATCTTCTCGGTGGACACACTCTTGGTCTCGTAAGCAAGAAAGATTCCTAGCAGCAGCAGCAGCCCCTTGTAACCATAGAAAATTCCTAGGATGGCAGGAAAGGGTCACCTGGGCAACAAGGACCTCCATGCTCCCCACAT-AACCCTCACCCTCTCTCTGCCCTTCA---------------TCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57916448 255 -  94987271 GGCCCATTTCCAGGACCAACGCCA-GGTGTCAAGAA--AGCTTACCGCAACATTGTAGATAGCCATGCCCACGGCCCTGTGGTCATTGATCTTTTCAGTGGACACACTTTTGGTCTCATAAGCAAGAAAGATTCCCAGCAGCAGCAGCAGCCCTTTGTAACCATAGAAAATGCCTAGGAGAGCAGGAAAAGGTTTCAGGGGTAACAAGGACCGCCATACTCCCAACTCAAATCCTCTTCCTCTCTTTGCCCTTTG---------------CTT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26214564 259 +  26524999 ----AGCCCCCGGGGTCAGTGCTGGGTGTCCG---G--GGCTCACCGCCACGTTGTAGATGGCCATGCCCACAGCCCGGTGGTCATTGATCTTCTCAGTAGACACGCTCTTGGTCTCATAAGCAAGAAAGATGCCTAGCAGCAGCAGCAGCCCCTTGTAACCATAGAAAATGCCTAGAATGG-AGGAAACGGTCACCTGGGCAACTAGACCTGATGTAT---CCACTC-ACTCCCAGCACCCTCTGCATCCTCCAGAGGATGCTGCTGTTCCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            22542 229 +    102524 -------------------GGCCAGGGGTCCC---AGCTGCTCACCGCCACGTTGTAGATGGCCATGCCCACGGCGCGGTGGTCGTTGATCTTCTCGGTGGACACACTCTTGGTCTCGTAAGCAAGGAAGATGCCCAGCAGCAGCAGCAGCCCCTTGTAGCCGTAGAAGATGCCTGCGAGGCCAGCAGAGGGTGACCTGGGCAGCGGGACCC----CGCGCC-CACCC-AGGCCCTG-CCCTTGTCTGCCCTTGT---------------CAG
i dasNov3.JH582591         C 0 C 0

a score=40953.000000
s hg38.chr6_GL000254v2_alt   871175 3 +   4827813 -ACT
s panTro5.chr6             29833853 3 + 175400573 -ACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30068675 3 + 173848474 -ACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5874961 3 +   6154872 -ACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74583807 3 + 122973662 -ACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30065014 3 + 172585720 -ACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29727858 3 - 170955103 -ACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2773277 3 -   2996164 -ACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     526905 3 +    766320 -ACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28983746 3 -  71996105 -ACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     159900 3 +    290775 -ACT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2618334 3 -   3067355 -ACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30057563 3 + 171630274 -ACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           205742 3 -    242197 -ACT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     199122 3 -   1771730 -ATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     273493 3 -    457564 -ACT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     582130 3 +    730504 -ACT
i proCoq1.NW_012152574v1   C 0 I 25
s otoGar3.GL873550            93996 3 +  18854210 -ACT
i otoGar3.GL873550         C 0 I 19
s mm10.chr17               57916703 3 -  94987271 -ACT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26214823 3 +  26524999 -GCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            22771 3 +    102524 AGC-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                86973 33 + 123392446 I

a score=55739.000000
s hg38.chr6_GL000254v2_alt   871178 6 +   4827813 CTGAAA
s panTro5.chr6             29833856 6 + 175400573 CTGCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30068678 6 + 173848474 CTGCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5874964 6 +   6154872 CTGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74583810 6 + 122973662 CTGCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30065017 6 + 172585720 CTGCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29727861 6 - 170955103 CTGCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2773280 6 -   2996164 CTGCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     526908 6 +    766320 CTGCAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28983749 6 -  71996105 CTGTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     159903 6 +    290775 CTGCAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2618337 6 -   3067355 CTGCAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30057566 6 + 171630274 CCATGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           205745 6 -    242197 CCACAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     199125 6 -   1771730 CCACAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     273496 6 -    457564 CCACAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            94018 6 +  18854210 CCACAA
i otoGar3.GL873550         I 19 C 0
s mm10.chr17               57916706 1 -  94987271 -----A
i mm10.chr17               C 0 C 0
s canFam3.chr35            26214826 5 +  26524999 -TACAG
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            22774 6 +    102524 CCACAG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                86973 33 + 123392446 I
e proCoq1.NW_012152574v1     582133 25 +    730504 I

a score=81588.000000
s hg38.chr6_GL000254v2_alt   871184 7 +   4827813 TGGAAAG
s panTro5.chr6             29833862 7 + 175400573 TGGAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30068684 7 + 173848474 TGGAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5874970 7 +   6154872 TGGAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74583816 7 + 122973662 TGGAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30065023 7 + 172585720 TGGAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29727867 7 - 170955103 TGGAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2773286 7 -   2996164 TGGAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     526914 7 +    766320 TGGAAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28983755 7 -  71996105 TGGAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     159909 7 +    290775 TGGAAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2618343 7 -   3067355 TGGAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30057572 7 + 171630274 TGGAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           205751 7 -    242197 TGGAAAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     199131 7 -   1771730 TGGAAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     273502 7 -    457564 TGGAAAG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     582158 7 +    730504 TGGACAG
i proCoq1.NW_012152574v1   I 25 C 0
s otoGar3.GL873550            94024 7 +  18854210 TGGAGTA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26214832 7 +  26524999 TCCACAA
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            22780 6 +    102524 CGGAAG-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                86973 33 + 123392446 I
e mm10.chr17               57916707 0 -  94987271 C

a score=302160.000000
s hg38.chr6_GL000254v2_alt   871191 23 +   4827813 GGGG-CCCTCCTCTCCAATCCAAC
s panTro5.chr6             29833869 23 + 175400573 GGGG-CCCTCCTCTCCAATCCAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30068691 23 + 173848474 GGGG-CCCTCCTCTCCAATCCAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5874977 23 +   6154872 GGGG-CCCTCCTCTCCAATCCAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74583823 23 + 122973662 GGGG-CCCTCCTCTCCAATCCAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30065030 23 + 172585720 GGGG-CCCTCCTCTCCAATCCAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29727874 23 - 170955103 GGGG-CCCTCCTCTCCAATCCAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2773293 23 -   2996164 GGGG-CCCTCCTCTCCAATCCAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     526921 23 +    766320 GGGG-CCCTCCTCTCCAATCCAGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28983762 23 -  71996105 GGGG-CCCTCCTCTCCAATCCAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     159916 23 +    290775 GGGG-CCCTCCTCTCCAATCCAGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2618350 23 -   3067355 GGGG-CCCTCCTCTCCAATCCAGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30057579 23 + 171630274 GGAG-CCCCCCTCTCCAATCCAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           205758 22 -    242197 GGGG--CCCCCTCTCCAATCCGGC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     199138 23 -   1771730 GGGG-CCCCCCTCTCCAATCCAGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     273509 24 -    457564 GGGGCCCCCCCTCTCCAATCCAGC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                87006 23 + 123392446 GGGG-CTCTCCTCTCCAAGCCAGC
i micMur3.chr6             I 33 C 0
s proCoq1.NW_012152574v1     582165 23 +    730504 GGGG-ATCTCCTCTCCAAGCCAGC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            94031 18 +  18854210 --GG-AT---TTCTCAAAGCCAGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57916707 14 -  94987271 -------CTGCTCTT---TGTAGC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26214839 18 +  26524999 TGAA-GGCTCCTCCCCAGG-----
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            22786 23 +    102524 GAGG-TCCCCCTCTCCAGGCCAAC
i dasNov3.JH582591         C 0 I 608

a score=810904.000000
s hg38.chr6_GL000254v2_alt   871214 66 +   4827813 CCCTCT------G-ACCTAGCAAACCTC--ACCCTGTGTC----CCCTATCCCTTATGTCCACCCAACTTGCCCAGACC
s panTro5.chr6             29833892 66 + 175400573 CCCTCT------G-ACCTAGCAAACCTC--ACCCTGTGTC----CCCTATCCCTTACGTCCACCCAACTTGCCCAGACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30068714 70 + 173848474 CCCTCT------G-ACCTAGCAAACCTC--ACCCTGTGTCCCCTCCCTATCCCTTACGTCCACCCAACTTGCCCAGACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5875000 66 +   6154872 CCCTCT------G-ACCTAGCAAACCTC--ACCCTCTGTC----CCCTATCCCTTATGTCCACCCAACTTGCCCAGACC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74583846 66 + 122973662 CCCTCC------G-ACCTAGCAAACCTC--ACCCTGTGTC----CCCCATCCCCTATGTCCACCCAACTTGCCCAGAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30065053 66 + 172585720 CCCTCT------G-ACCTAGCAAACCTC--ACCCTGTATC----CCCTACCCGCTATGTCCACCCAACTTGCCCAGACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29727897 66 - 170955103 CCCTCT------G-ACCTAGCAAACCTC--ACCCTGTATC----CCCTACCCGCTATGTCCACCCAACTTGCCCAGACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2773316 66 -   2996164 CCCTCT------G-ACCTAGCAAACCTC--ACCCTGTATC----CCCTACCCGCTATGTCCACCCAACTTGCCCAGACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     526944 66 +    766320 CCCTCT------G-ACCTAGCAAACCTC--ACCCTGTATC----CCCCACCCGCTATGTCCACCCAACTTGCCCAGACC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28983785 66 -  71996105 CCCTCT------G-ACCTAGCAAACCTC--ACCCTGTATC----CCCCACCCACTATATCCACCCAACTTGCCCAGACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     159939 66 +    290775 CCCTCT------G-ACCTAGCAAACCTC--ACCCTGTATC----CCCCACCCGCTATGTCCACCCAACTTGCCCAGACC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2618373 66 -   3067355 CCCTCT------G-ACCTAGCATACCTC--ACCCTGTATC----CCCCACCCTCTATGTCCACCCAACTTGCCCAGACC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30057602 66 + 171630274 CCCTTT------G-ACCTAGCAAACCTC--ACCCTGTGTC----CCATACCCCCTATGCTCTCCTAACTTGCCCAGACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           205780 72 -    242197 CCCTTGCTCACAG-GGTGAGCAAGCCTC--ACCCTGTGTC----CCCTACCCGCTATGTTCTCCTAACTTGCCCAGACC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     199161 66 -   1771730 CCCTTT------G-ACCTAGCAAGCCTC--ACCCTGTGTC----CCCTACCCCCTATGTTCTCCTAACTTGCCCAGACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     273533 56 -    457564 CCCTTT------G-ACCTAGCAAACCTC--ACCCTGTGTC----CCCTACCCTCTATGTCC----------CCCAGACC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                87029 64 + 123392446 CCCTCC------G-ACCCAGCACTCCTC---ACCTGTGTC----GCCCA-CCCCTATGTCCACCCAACTTGCCCAGACC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     582188 65 +    730504 CCCTCC------G-ACCCAGCACACCTC---ACCCGTGTC----GCCCACCCCCTATGTCCACCCAACTTGCCCAGACC
i proCoq1.NW_012152574v1   C 0 I 309
s otoGar3.GL873550            94049 68 +  18854210 CCCTCT------G-ATCTACCACACCCCCAGCCCCCTGTC----CCCTACTCTCGATGTCCACCCAACTTGCACAAACT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57916721 43 -  94987271 TCCTCT------GTGTAAAGAAAGCCAC--GCCTCATTTC----CATT------------------------CTAGACC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26214857 45 +  26524999 -----T------G-GCCT------CCTG--ACCCCGCACA----CC----------TGTCTCCCCAACTTGTCCAAACC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            23417 50 +    102524 CCCTCT------G-AC--AAGGAGCCCC--CTCCTGTGTC----CCCCCACCCTCCTGTGTCCCC--------------
i dasNov3.JH582591         I 608 C 0

a score=373131.000000
s hg38.chr6_GL000254v2_alt   871280 31 +   4827813 ACATCACTTTTTCCTGGGA-----TTCACACAGGAA
s panTro5.chr6             29833958 31 + 175400573 ACATCACTTTTTCCTGGGA-----TTCACACAGGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30068784 31 + 173848474 ACATCACTTTTTCCTGGGA-----TTCACACAGGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5875066 31 +   6154872 ACATCACTTTTTCCTGGGA-----TTCACACAGGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74583912 31 + 122973662 ACATCACTTTTTCCTGGGA-----TTCACACAGGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30065119 31 + 172585720 TCATCACTTTTTCCTGGGA-----TTCACACAGGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29727963 31 - 170955103 TCATCACTTTTTCCTGGGA-----TTCACACAGGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2773382 31 -   2996164 TCATCACTTTTTCCTGGGA-----TTCACACAGGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     527010 31 +    766320 TCATCACTTTTTCCTGGGA-----TTCACACAGGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28983851 31 -  71996105 TCATCACTTTTTCCTGGGA-----TTCACACAGGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     160005 31 +    290775 TCATCACTTTTTCCTGGGA-----TTCACACAGGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2618439 31 -   3067355 TCGTCACTTTTTCATGGGA-----TTCACACAGGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30057668 31 + 171630274 ACATCACTTCCTCCTGGGA-----TTCGCACAGGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           205852 31 -    242197 GCGTCACTTCCTCCTGGGA-----TTCACACAGTAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     199227 31 -   1771730 GCATCACTTCCTCCTGGGA-----TTCACACAGTAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     273589 31 -    457564 GCATCACTTCCTCCTGGGA-----TTCACACAGGAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                87093 30 + 123392446 -GCCTGCTTCCTCTTGGGA-----TTCACACAGGAA
i micMur3.chr6             C 0 I 277
s otoGar3.GL873550            94117 31 +  18854210 CTACTGCTTCCTCCTAGAA-----GTCACATAGGAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57916764 11 -  94987271 ----------CTCTGTGGC-----TT----------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26214902 26 +  26524999 TCACCACTT-CTCCTGGGA---------CACAGGAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            23467 32 +    102524 ----CACCTCTGACAAGGAGCACCTTCACACAGGAT
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     582253 309 +    730504 I

a score=2606251.000000
s hg38.chr6_GL000254v2_alt   871311 263 +   4827813 AGCAATGGTGGCAAGCTGCTGTCAGTCAGGCAAGGGCTTGTTGAATATCTAGAAATAGGCCAGTCTGGGCCACAC---A-TGCCTCA-CC--CTTACCCTACAGGTGGGAAGGTGGCTTTCCAggcagaggg---taggtttgcaatttgtgaccatgaatc-gaacaatgctaataaggccaagggggatctaaA-------------------------------------------------------------AGATA---ATGTCAAG-T---CTGGA------------GGTG--GGGTTA--C---CCCCACTTGTTCCTCTGCTGAACACAAG---TTCTTCATCTGTGCTTTCTG
s panTro5.chr6             29833989 254 + 175400573 AGCAATGGTGGCAAGCTGCTGTCAGTCAGGCAAGGGCTTGTTGAATATCTAGAAATAGGCCAGTCTGGGCCACAC---A-TGCCTCA-CC--CTTACCCTACAGGTGGGAAGGTGGCTTTCCAGGCAGAGGG---TAGGTTTGCAATTTGTGACCATGAATC-GAACAATGCTAATAAGGCCAAGGGGGATCTAAA-------------------------------------------------------------AGATA---ATGTCAAG-T---CTGGA------------GGTG--GGGTTA--C---CCCCACTTGTTCCTCTGCTGAACACAAG---TTCTTCA---------TCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30068815 254 + 173848474 AGCAATGGTGGCAAGCTGCTGTCAGTCAGGCAAGGGCTTGTTGAATATCTAGAAATAGGCCAGTCTGGGCCACAC---A-TGCCTCA-CC--CTTACCCTACAGGTGGGAAGGTGGCTTTCCAGGCAGAGGG---TAGGTTTGCAATTTGTGACCATGAATC-AAACAATGCTAATAAGGCCAAGGGGGATCTAAA-------------------------------------------------------------AGATA---ATGTCAAG-T---CTGGA------------GGTG--GGGTTA--C---CCCCACTTGTTCCTCTGCTGAACACAAG---TTCTTCA---------TCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5875097 254 +   6154872 AGCAATGGTGGCAAGCTGCTGTCAGTCAGGCAAGGGCTTGTTGAATATCTAGAAATAGGCCAGTCTGGGCCACAC---A-TGCCTCA-CC--CTTACCCTACAGGTGGGAAGGTGGCTTTCTAGGCAGAGGG---TAGGTTTGCAATTTGTGACCATGAATC-GAACAATGCTAATATGGCCAAGGGGGATCTAAA-------------------------------------------------------------AGATA---ATGTCAAG-T---CTGGA------------GGTG--GGGTTA--C---CCCCACTTGTTCCTCTGCTGAACACAAG---TTCTTCA---------TCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74583943 254 + 122973662 AGCAATGGTGGCAAGCTGCTGTCAGTCAGGCAAGGGCTTGTTGAATATCTAGAAATAGGCCAGTCTGGGCCACAC---A-TGCCTCA-CC--CTTACCCTACAGGTGGGAAGGTGGCTTTCCAGGCAGAGGG---TAGGTTTGCAACTTGTGACCATGAATC-AAACAATGTTAATAAGGCCAAGGGGGATCTAAA-------------------------------------------------------------AGATA---ATGTCAAG-T---CTGGA------------GGTG--GGGTTA--C---CCCCACTTGTTGCTCTGCTGAACACAAG---TTCTTCA---------TCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30065150 253 + 172585720 GGCAATGGTGGCGAGCTGCTGTCAGTCAGGCAAGAGCTTGCTGAATATCTAGAAATAGGCCAGTCTGGGCCACAC---A-TGCCTCA-CC--CTTACCCTCCAGTGGGGAAGGTGGTTTTCCAggcagaggg---taggtttgccatttgtgaccatgaatt-gaacaatgttaataaggccaagggggatcTAGA-------------------------------------------------------------AGATA---ACGTCGGG-T---CTGGC------------GGT---GGATTA--C---CCTCACTTGTCCCTCTGCTGAACACAAG---TTCTTCA---------TCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29727994 253 - 170955103 GGCAATGGTGGCGAGCTGCTGTCAGTCAGGCAAGAGCTTGCTGAATATCTAGAAATAGGCCAGTCTGGGCCACAC---A-TGCCTCA-CC--CTTACCCTCCAGTGGGGAAGGTGGTTTTCCAGGCAGAGGG---TAGGTTTGCCATTTGTGACCATGAATC-GAACAATGTTAATAAGGCCAAGGGGGATCTAGA-------------------------------------------------------------AGATA---ACGTCGGG-T---CTGGC------------GGT---GGATTA--C---CCTCACTTGTCCCTCTGCTGAACACAAG---TTCTTCA---------TCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2773413 253 -   2996164 GGCAATGGTGGCGAGCTGCTGTCAGTCAGGCAAGAGCTTGCTGAATATCTAGAAATAGGCCAGTCTGGGCCACAC---A-TGCCTCA-CC--CTTACCCTCCAGTGGGGAAGGTGGTTTTCCAGGCAGAGGG---TAGGTTTGCCATTTGTGACCATGAATC-GAACAATGTTAATAAGGTCAAGGGGGATCTAGA-------------------------------------------------------------AGATA---ACGTCGGG-T---CTGGC------------GGT---GGATTA--C---CCTCACTTGTCCCTCTGCTGAACACAAG---TTCTTCA---------TCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     527041 253 +    766320 GGCAATGGTGGCGAGCTGCTGTCAGTCAGGCAAGAGCTTGCTGAATATCTAGAAATAGGCCAGTCTGGGCCACAC---A-GGCCTCA-CC--CTTACCCTCCAGTGGGGAAGGTGGTTTTCCAGGCAGAGGG---TAGGTTTGCCATTTGTGACCATGAATC-GAACAATGTTAATAAGGCCGAGGGGGATCTAGA-------------------------------------------------------------AGATA---ACGTCGGG-T---CTGGC------------GGT---GGATTA--C---CCTCACTTGTCCCTCTGCTGAACACAAG---TTCTTCA---------TCTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28983882 253 -  71996105 GGCAATGGTGGCGAGCTGCTGTCAGTCAGGCAAGAGCTTGCTGAATATCTAGAAATAGGCCAGTCTGGGCCACAC---A-TGCCTCA-CC--CTTACCCTCCAGGGGGGAAGGTGGTTTTCCAGGCAGAGGG---TAGGTTTGCCATTTGTGACCATGAATC-GAACAATGTTAATAAGGCCAAGGGGGATCTAGA-------------------------------------------------------------AGATA---ACGTCGGG-T---CTGGA------------GGT---GGATTA--C---CCTCACTTGTCCCTCTGCTGAACACAAG---TTCTTCA---------TCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     160036 253 +    290775 GGCAATGGTGGCGAGCTGCTGTCAGTCAGGCAAGAGCTTGCTGAATATCTAGAAATAGGCCAGTCTGGGCCACAC---A-GGCCTCA-CC--CTTACCCTCCAGTGGGGAAGGTGGTTTTCCAGGCAGAGGG---TAGGTTTGCCATTTGTGACCATGAATC-GAACAATGTTAATAAGGCCGAGGGGGATCTAGA-------------------------------------------------------------AGATA---ACGTCGGG-T---CTGGC------------GGT---GGATTA--C---CCTCACTTGTCCCTCTGCTGAACACAAG---TTCTTCA---------TCTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2618470 253 -   3067355 GGCAATGGTGGCGAGCTGCTGTCAGTCAGGCAAGAGCTTGCTGAATATCTAGAAATAGGCCAGTCTGGGCCACAC---A-TGCCTCA-CC--CTTACCCTCCAGGGGGGAAGGTGGTTTTCCAGGCAGAGGG---TAGGTTTGCCATTTGTGACCACGAAAC-GAACAATGTTAATAAGGCTAAGGGGGATCTAGA-------------------------------------------------------------AGATA---ATGTCGGG-T---CTGGA------------GGT---GAATTA--C---CCTCACTTATCCCTCTGCTGAACACAAG---TTCTTCA---------TCCG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30057699 255 + 171630274 GGCAATGGTGGTGAGCTGCTGTCAGTCAGGCAAGAGCTTGTTGAATATCTAAAAATAGGCCAGTCTGGGCCACAC---A-TGCCTCA-CC--CTTGCCTTCCAGGTGGGAAGGTGGCTTTCCAGGCAAAGGG---TAGATTTGCCATTTGTGACCATGAATCAGAGCAATGTTCATAAGGCCAAGGGGGATCTAAA-------------------------------------------------------------AGATA---ACGTCAAG-T---CTGGA------------GGTG--AGGTTA--C---CCCAACTTGTCCCTCTGCTGAACATAAG---CTCTTCA---------TCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           205883 255 -    242197 GGCAATGGTGGTGAGTTGCTGTCAGTAAGGAAAGAGGTTGTTGAATATCTAAAAATAGGCCAGTCTGGGCCACAC---A-TGCCTCA-CC--CTTACCCACCAGGTGGGAAGGTGGCTTTCCAGGCAAAGGG---TAAATTTGCCATTTGTGACCATGAATCAGAGCAATGTTCATAAGGCCAAGGGGGATCTAAA-------------------------------------------------------------AGATA---ACATCAAG-T---CTGGA------------GGTG--AGGTTA--C---CCCAACTTGTCCCTCTGCTGAACACAAG---CTCTTCA---------CCTC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     199258 255 -   1771730 GGCAATCATGGTGAGCTGCTGTCAGTCAGGCAAGAGCTTGTTGAGTATCTAAAAATAGGCCAGTCTGGGCCACAC---A-TGCCTCA-CC--CTTACCCTCCAGGTGGGAAGGTGGCTTTCCAggcaaaggg---tagatttgccatttgtgaccatgaatcagagcaacgttcataaggccaagggggatctaaA-------------------------------------------------------------AGATA---ACGTCAAG-T---CTGGA------------GGTG--AGGTTA--C---CCCAACTTGTCCCTCTGCTGAACACAAG---CTCTTCA---------TCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     273620 255 -    457564 GGCAATGGTGGTGAGCTGCTGTCAGTCAGGCAAGAGCTTGTTGAATATCCAAAAATAGGCCAGTCTGGGCCACAC---A-TGCCTCA-CC--CTTACTCTCCAGGTGGGAAGGTGGCTTTCCAGGCAAAGGG---TAGATTTGCCATTTGTGACCATGAATCAAAGCAATGTTCATAAGGCCAAGGGGGATCTAAA-------------------------------------------------------------AGATA---ACGTCAAG-T---CTGGA------------GGTG--AGGTTA--C---CCCAACTTGTCCCTCTGCTGAACACAAG---CTCTTCA---------TCTC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            94148 283 +  18854210 GATGACAATCATGAGCAGCTGTCGGTCAGGTTATAGC-TGTTGAACAACTGGAGATGGGCCA-TCTGGGCCACAC---AGTGCCTCATCT--CTTATTCCCCAGGTGGGAaggtg--------------------------tgccatttgtgaccataaatcagagaaatgctaataaggccaagagggacctaaacccatgaccttac------agtccctattt-------taatctagggagctcattagacacaaaAG---CCATCAAG-T---CTAGA------------GAAA--GGGTCA--T---CCCCACTTGTCCCTTTGCTAATCACAAATTCTTCTTCA---------TCTC
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57916775 248 -  94987271 ------------------------------------CCTATGGAGCGGCTAGAAATGATCCAATGGATGCTACCC---AGTATCTCAACC--CATTCCCTCCAGGCAGCAACATG-CAGCGCAGGCGAGGGGGTTTTAGTTCACCAGGTGGATTTGTAGATTGGATGAACGTTGGTCAGGCTGAAGGGAGGCTAAGTCCACGACCTCACAA-CTTAGTC--------------------------------------ACTTA---CTTTCAGGAG---CTGGCCAGACACAGATGGGT---GAGTCA--CCCGCCCACCCTGGCCCTCTGCTGAACATCA------------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26214928 237 +  26524999 GAAGACTGTTGGGAGCAGGTATCAGCCAGACAGGGGC---------------------------CCTGGCTGCAT--GA-TGTCACC-TC--CTCACCATCCAG-------------------------GGG---AGGTTTCACCCTTCCTGGCTGCCCACCAGAGCAATGTTCACAAGGCCAAATGGGACCTAACCCAGGCCCCTCACAGCCCCGGTCTCACTCT-------------------------------AGGGA-----GCCAAG-TGAACGGAT------------GGTGTCAGGCTG--T---CCCCACTGGCCCTTCAGCCACACACAGG---CACGACC---------TCAG
i canFam3.chr35            C 0 I 4
s dasNov3.JH582591            23499 274 +    102524 GAGGATGGCCGTGGGCAGCTGTTGGCCGG----TGTCCAGCTGA--AGCTGGAAACAG-CCACCCTGGTCCACGCTCAG-TGTCCTA-CCCACTGGCCCTCCAGG------------------GACTGAGCG---T-GGTTTCCCGTTTGTGCTCAAGGACA-GAGCAACGCTGCCATGGCCAAAGGGGCCCTGAACTCATGACCTCGAGGTCCTGTCCTTAAACTGGGCAGCTCCCC-------------------AGACGTGGATGTCA-G-T---CTAGG------------GACG--GGGACAAGC---CCCTAACTG---CACTGACGAGCTCAGC---CTCAGCC---------CT--
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                87123 277 + 123392446 I
e proCoq1.NW_012152574v1     582253 309 +    730504 I

a score=10920.000000
s hg38.chr6_GL000254v2_alt   871574 1 +   4827813 T
s panTro5.chr6             29834243 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30069069 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5875351 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74584197 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30065403 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29728247 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2773666 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     527294 1 +    766320 T
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28984135 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     160289 1 +    290775 T
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2618723 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30057954 1 + 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           206138 1 -    242197 T
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     199513 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     273875 1 -    457564 T
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6                87123 277 + 123392446 I
e mm10.chr17               57917023 0 -  94987271 C
e dasNov3.JH582591            23773 0 +    102524 C
e proCoq1.NW_012152574v1     582253 309 +    730504 I
e canFam3.chr35            26215165 4 +  26524999 I
e otoGar3.GL873550            94431 1 +  18854210 I

a score=672295.000000
s hg38.chr6_GL000254v2_alt   871575 39 +   4827813 GCTTTGGGCCCTAAGCTCCTCATAGC-AAAAGAGCAACTC
s panTro5.chr6             29834244 39 + 175400573 GCTTTGGGCCCTAAGCTCCTCATAGC-AAAAGAGCAACTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30069070 39 + 173848474 GCTTTGGGCCCTAAGCTCCTCATAGC-AAAAGAGCAACTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5875352 39 +   6154872 GCTTTGGGCCCTAAGCTCCTCATAGC-AAAAGAGCAACTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74584198 39 + 122973662 GCTTTGGGCCCTAAGCTCCTCATAGC-AAAAGAGCAACTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30065404 39 + 172585720 GCTTTGGGCCCTAAGCTCCTCATAGC-AAAAGAGCAACTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29728248 39 - 170955103 GCTTTGGGCCCTAAGCTCCTCATAGC-AAAAGAGCAACTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2773667 39 -   2996164 GCTTTGGGCCCTAAGCTCCTCATAGC-AAAAGAGCAACTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     527295 39 +    766320 GCTTTGGGCCCTAAGCTCCTCATAGC-AAAAGAGCAACTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28984136 39 -  71996105 GCTTTGGGCCCTAAGCTCCTCATAGC-AAAAGAGCAACTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     160290 39 +    290775 GCTTTGGGCCCTAAGCTCCTCATAGC-AAAGGAGCAACTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2618724 39 -   3067355 GCTTTGGGCCCTAAGCTCCTCATAGC-AAAAGAGCAACTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30057955 39 + 171630274 GCTTTGGGCCCTAAGCTCCTCATAGC-AAAAGAGCAACTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           206139 39 -    242197 GCTTTGGGCCCTAAGCTCCTCATAGC-AAAAGAGCAACTC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     199514 39 -   1771730 GCTTTGGGCCCTAAGCTCCTCATAGC-AAAAGAGCAACTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     273876 39 -    457564 GCTTTGGGCCCTAAGCTCCTCATAGC-AAAAGAGCAACTC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                87400 39 + 123392446 GCTTTGGAGCCTAAGTTCCTCATAGC-AAAAGACCAACTC
i micMur3.chr6             I 277 I 139
s proCoq1.NW_012152574v1     582562 39 +    730504 GCTTTGGAGCCTAAGCTCCTCACAGC-AAAAGACCAACTC
i proCoq1.NW_012152574v1   I 309 I 142
s otoGar3.GL873550            94432 39 +  18854210 GCTTTCAACCCTGAGCTCCTCAAAGT-GAAAGACTAACTC
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57917023 25 -  94987271 ---------------CTACTCACAGCAAAAAGACCAAAGC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26215169 39 +  26524999 GCTCTAGACGCTCAGCTCCTCACCGA-AAAAGACCAACTC
i canFam3.chr35            I 4 C 0
s dasNov3.JH582591            23773 39 +    102524 GCTTTGTCCCCAGAGCTCTTTGCAGC-AAAGGACCGACTC
i dasNov3.JH582591         C 0 C 0

a score=1536672.000000
s hg38.chr6_GL000254v2_alt   871614 142 +   4827813 TCCCCTATTCTCAGAAAAGATTAGTGCAATAACAAAGAGTAGGGTGTTCAAACTGGG--TTGACA-AGCTCTCTACCTCCTCTTCCAAAGACCCCTCTCCCTCCAAGCCCTCTACCCCTG-CCTTCCCTCCTGCCTTTGTGCATCC
s panTro5.chr6             29834283 142 + 175400573 TCCCCTATTCTCAGAAAAGATTAGTGCAATAACAAAGAGTAGGGTGTTCAAACTGGG--TTGACA-AGCTCTCTACCTCCTCTTCCAAAGACCCCTCTCCCTCCAAGCCCTCTACCCCTG-CCTTCCCTCCTGCCTTTGTGCATCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30069109 142 + 173848474 TCCCCTATTCTCAGAAAAGATTAGTGCAATAACAAAGAGTAGGGTGTTCAAACTGGG--TTGACA-AGCTCTCTACCTCCTCTTCCAAAGACCCCTCTCCCTCCAAGCCCTCTACCCCTG-CCTTCCCTCCTGCCTTTGTGCATCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5875391 141 +   6154872 T-CCCTATTCTCAGAAAAGATTAGTGCAATAACAAAGAGTAGGGTGTTCAAACTGGG--TTGACA-AGCTCTCTACCTCCTCTTCCAAAGACCCCTCTCCCTCCAAGCCCTCTACCCCTG-CCTTCCCTCCTGCCTTTGTGCATCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74584237 142 + 122973662 TCCCCTATTCTCAGAAAGGATTAGTGCAATAACAAAGAGTAGGGTGTTCAAACTGGG--TTGACA-AGCTCTCTATCTCCTCTTCCAAAGACCCCTCTCTCTCCAAGCCCTCTGTCCCTG-CCTTCCCTCCTGCCTTTGTGCATCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30065443 142 + 172585720 TCCCCTATTCTCAGAAAAGATTAGTGCAATAATAAAGAGTAGGGTGTTCAAACTGGG--TTGAGA-CGCTCTCTACCTCCTCTTCCAAAGACCCCTCTCCCTCCAAGCCCTCTGCCCTTG-CCTTCCCTCCTGCCTTTGTGCATCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29728287 142 - 170955103 TCCCCTATTCTCAGAAAAGATTAGTGCAATAATAAAGAGTAGGGTGTTCAAACTGGG--TTGAGA-CGCTCTCTACCTCCTCTTCCAAAGACCCCTCTCCCTCCAAGCCCTCTGCCCTTG-CCTTCCCTCCTGCCTTTGTGCATCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2773706 142 -   2996164 TCCCCTATTCTCAGAAAAGATTAGTGCAATAATAAAGAGTAGGGTGTTCAAACTGGG--TTGAGA-CGCTCTCTACCTCCTCTTCCAAAGACCCCTCTCCCTCCAAGCCCTCTGCCCTTG-CCTTCCCTCCTGCCTTTGTGCATCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     527334 142 +    766320 TCCCCTATTCTCAGAAAAGATTAGTGCAATAACAAAGAGTAGGGTGTTCAAACTGGG--TTGAGA-CGCTCTCTACCTCCTCTTCCAAAGACCCCTCTCCCTCCAAGCCCTCTGCCCTTG-CCTTCCCTCCTGTCTTTGTGCATCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28984175 142 -  71996105 TCCCCTATTCTCAGAAAAGATTAGTGCAATAACAAAGAGTAGGGTGTTCAAACTGGG--TTGAGA-CCCTCGCTACCTCCTCTTCCAAAGACCCCTCTCCCTCCAAGCCCTCTGCCCTTG-CCTTCCCTCCTGTCTTTGCGCATCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     160329 142 +    290775 TCCCCTATTCTCAGAAAAGATTAGTGCAATAACAAAGAGTAGGGTGTTCAAACTGGG--TTGAGA-CGCTCTCTACCTCCTCTTCCAAAGACCCCTCTCCCTCCAAGCCCTCTGCCCTTG-CCTTCCCTCCTGTCTTTGTGCATCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2618763 142 -   3067355 TCCCCTATTCTCAGAAAAGATTAGTGCAATAACAAAGAGTAGGGTATTCAAACTGGG--TTGAGA-AGCTCTCTACCTCCTCTTCCAAAGACCCCTCTCCCTCCAAGTCCTCTGCCCTTG-CCTTCCCTCTTGCCTTTGTGTATCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30057994 141 + 171630274 TCTCCTATTCTTAGAAAAGATTAGTGCAATAACAAAGAGTGAGGTATTCAAACTGGG--TTGACA-AGCTCTCTACCTCCTCTTCCAAAGA-CGCTCACCCTCCAAGCCCTCTGCCCCTG-CCCTCCCTCCTGCCTTTGTGCATCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           206178 135 -    242197 TCCCCTGTTCTTGGAAAAGATTAGTG------CAAAGAGTGAGGTGTTCAAACTGGG--TTGACA-AGCTCTCTACCTCCTCCTCCAAAGA-CCCTCACCCTCCGAGCCCTCTGCCCCTG-CCCTCCCTCCTGCCTTTCTGTGTCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     199553 141 -   1771730 TCCCCTATTCTTAGAAAAGATTAGTGCAATAACAAAGAATGAGGTGTTCAAACTGGG--TTGACA-AGCTCTCTACATCCTCTTCCAAAGA-CCCTCACCCTCCGAGCCCTCTGCCCCTG-CCCTCCTTGCTGCCTTTGTGCGTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     273915 141 -    457564 TCCCCTATTCTTAGAAAAGATTAGTGCAATAACAAAGATTGAGGTGTTCACACTGGG--TTGACA-AGCTCTCTACCTTCTCTTCCAAAGA-CCCTCACCCTCCGAGCCCTCTGCCCCTG-CCCTCCCTCCTGCTTTTGTGCGTCC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            94471 144 +  18854210 ACCTCCAGTCTAAAAACATATTACTACAATAACAATGAGGGAAACATTCCAACTGGGACATCGGG-AGCTCTTTGCTTCCTCTCCCAGTGATGCTTCTCTCCCCAGAACTACTGTCCTTGACCACCCCTCCTGCCTTTGC-CACAC
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               57917048 115 -  94987271 TCTCCTATTCTTGGAAAAGTTTAGTGTAGT------GAGAAAGGCACTGAAAC--GG--T-------------------CTCCTCTGAATGGCCCTTCTCCCCATGGCCTGCTGCTGTTACCCCTTTCTCCGGC--TTATGCTTCC
i mm10.chr17               C 0 I 3
s canFam3.chr35            26215208  97 +  26524999 TCCTGCCTTCCCAGAAAGAACTAGTG-----ACACAGAGGTGGACACTCAAACTACC---------------------CCTTCTCTGAAGA-CCCTCTGTCCCCAG----------CCTG-CCAACCCGCTCACC-----------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            23812 122 +    102524 -CCCTAACCCTCAGAGAGGATGAGCGCAGT-GCGCAGGGGCGAGGGCTCAACCTGGC--TGGACACAgctcccg---tcctttctcaag---ccttcgtcct----gccccccgcccccg-ccttcattcccccccc---------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                87439 139 + 123392446 I
e proCoq1.NW_012152574v1     582601 142 +    730504 I

a score=3159335.000000
s hg38.chr6_GL000254v2_alt   871756 191 +   4827813 CTGCCCTCCTT--TGCCCACATCCCACACACCAAGCCATGTATTCATCTTCCTGGAGCTGCAATGCTCCAGCTGGGGCAGAATAGAGACGTCAATATCTTCCTTAGGTTCCTCCTTGGCAAATGTCTAGGGCAGAAACAAGGTCACAAGAAAGATGGTTGCCAGCCTCC-----CCTCCTCT----CCTCAACGCTTCT--CAG
s panTro5.chr6             29834425 191 + 175400573 CTGCCCTCCTT--TGCCCACATCCCACACACCAAGCCATGTATTCATCTTCCTGGAGCTGCAATGCTCCAGCTGGGGCAGAATAGAGACGTCAATATCTTCCTTTGGTTCCTCCTTGGCAAATGTCTAGGGCAGAAACAAGGTCACAAGAAAGATGGTTGCCAGCCTCC-----CCTCCTCT----CCTCAACGCTTCT--CAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30069251 191 + 173848474 CTGCCCTCCTT--TGCCCACATCCCACACACCAAGCCATGTATTCATCTTCCTGGAGCTGCAATGCTCCAGCTGGGGCAGAATAGAGACGTCAATATCTTCCTTTGGTTCCTCCTTGGCAAATGTCTAGGGCAGAAACAAGGTCACAAGAAAGATGGTTGCCAGCCTCC-----CCTCCTCT----CCTCAACGCTTCT--CAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5875532 191 +   6154872 CTGCCCTCCTT--TGCCCACATCCCACACACCAAGCCATGTATTCATCTTCCTGGAGCTGCAATGCTCCAGCTGGGGCAGAATAGAGACGTCAATATCTTCCTTTGGTTCCTCCTTGGCAAATGTCTAGGGCAGAAACAAGGTCACAAGAAAGATGGTTGCCAGCCTCC-----CCTCCTCT----CCTCAACGCTTCT--CAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74584379 191 + 122973662 CTGCCCTCCTT--TGTCCACATCCCACAAACCAAGCCATGTATTCATCTTCCTGGAGCTGCAATGCTCCAGCTGGGGCAGAATAGAGACGTCAATATCTTCCTTTGGTTCCTCCTTGGCAAATGTCTAGGGGAGAAACAAGGTCACAAGAAAGATGGTTGCCAGCCTCC-----CCTCCTCT----CCTCAATGCTTCT--CAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30065585 185 + 172585720 CTGCCCTCCTT--TGCCCACATCCCACACACCAAGCCATGTATTCATCTTCCTGGAGCTGCAATGCTCCAGCTGGGGCAGAATAGAGACGTCGATATCTTCCTTTGGTTCTTCCTTGGCAAATGTCTAGGGGAGAAACAAGGTCACAAGAAAGATGGCTGCCAGCCTCC-----CCTCCTCT----CCTCAATGCT--------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29728429 185 - 170955103 CTGCCCTCCTT--TGCCCACATCCCACACACCAAGCCATGTATTCATCTTCCTGGAGCTGCAATGCTCCAGCTGGGGCAGAATAGAGACGTCGATATCTTCCTTTGGTTCTTCCTTGGCAAATGTCTAGGGGAGAAACAAGGTCACAAGAAAGATGGCTGCCAGCCTCC-----CCTCCTCT----CCTCAATGCT--------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2773848 185 -   2996164 CTGCCCTCCTT--TGCCCACATCCCACACACCAAGCCATGTATTCATCTTCCTGGAGCTGCAATGCTCCAGCTGGGGCAGAATAGAGACGTCGATATCTTCCTTTGGTTCTTCCTTGGCAAATGTCTAGGGGAGAAACAAGGTCACAAGAAAGATGGCTGCCAGCCTCC-----CCTCCTCT----CCTCAATGCT--------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     527476 185 +    766320 CTGCCCTCCTT--TGCCCACATCCCACACACCAAGCCATGTATTCATCTTCCTGGAGCTGCAATGCTCCAGCTGGGGCAGAATAGAGACGTCGATATCTTCCTTTGGTTCTTCCTTGGCAAATGTCTAGGAGAGAAACAAGGTCACAAGAAAGATGGTTGCCAGCCTCC-----CCTCCTCT----CCTCAATACT--------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28984317 185 -  71996105 CTGCCCTCCTT--TGCCCACATCCCACACACCAAGCCATGTATTCATCTTCCTGGAGCTGCAATGCTCCAGCTGGGGCAGAATAGAGACGTCGATATCTTCCTTTGGTTCTTCCTTGGCAAATGTCTAGGGGAGAAACAAGGTCACAAGAAAGATGGCTGCCAGCCTCC-----CCTCCTCT----CCTCAATGCT--------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     160471 185 +    290775 CTGCCCTCCTT--TGCCCACATCCCACACACCAAGCCATGTATTCATCTTCCTGGAGCTGCAATGCTCCAGCTGGGGCAGAATAGAGACGTCAATATCTTCCTTTGGTTCTTCCTTGGCAAATGTCTAGGGGAGAAACAAGGTTACAAGAAAGATGGTTGCCAGCCTCC-----CCTCCTCT----CCTCAATACT--------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2618905 185 -   3067355 CTGCCCTCCTT--TGCCCACATCCCACACACCAAGCCATGTATTCATCTTCCTGGAGCTGCAATGCTCCAGCTGAGGCAGAATAGAGACGTCGATATCTTCCTTTGGTTCCTCCTTGGCAAATGTCTAGGGGAGAAACAAGGTCACAAGAAAGATGGTTGCCAGCCTCC-----CCTCCTCT----CCTCAATGCT--------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30058135 191 + 171630274 CTGCCCTCCTT--TGTCCACAGCCCACACACCAAGCCATGTATTCATCTTCCTGGAGCTGCAGTGCTCCAGCTGGGGCAGAATAGAGACGTCAATATCTTCCTTTGGTTCCTCCTTGGCAAATGTCTAGGATAGAAACAGGGTCACAAAAAAGATGGTTGCCAGCCTCC-----CTTCCTCT----CCTCAATGCTTCT--CAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           206313 191 -    242197 CTGCCCTCCTT--TGCCCACAGCCCACACACCAAGCCATGTATTCATCTTCCTGGAGCTGCAGTGCTCCAGCTGGGGCAGAATAGAGACGTCGATATCTTCCTTTGGTTCCTCCTTGGCAAATGTCTAGGATAGAAAGAGGGTCACAAGAAAGATGGTTGCCAGCCTCC-----CTTCCTCT----CCTCAATGCTTCT--CAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     199694 191 -   1771730 CTGCCCTCCTT--TGCCCACAGCCCACATACCAAGCCATGTATTCATCTTCCTGGAACTGCAGTGCTCCAGCTGGGGCAGAATAGAGACGTCGATATCTTCCTTTGGTTCCTCCTTGGCAAATGTCTAGGATAGAAAGAGGGTCACAAGAAAGATGGTTGCCAGCCTCC-----CTTCCTCT----CCTCAATGCTTCT--CAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     274056 191 -    457564 CTGCCCTCCTT--TGCCCACAGCCCACACACCAAGCCATGTATTCATCTTCCTAGAGCTGCAGTGCTCCAACTGGGGCAGAATAGAGACGTCGATATCTTCCTTTGGTTCCTCCTTGGCAAATGTCTAGGATAGAAAAAGGGTCACAAGAAAGATGGTTGCCAGCCTCC-----CTTCCTCT----CCTCAATGCTTCT--CAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                87578 190 + 123392446 CTGCCCTCCTT--TCCCCACGGCCCACACACCCAGCCACGTGTTCATCTTCTTGGAGCTGCAGTGCTCCAGCTGGGGCAGGATAGACACGTCAATATCTTCCTTTGGTTCCTCCTTGGCAAATGTCTAAGA-AGAAATGGGGCCACAGGACAGATGGCTGCCAccctcc-----cctgccct----cctcaactctgct--cag
i micMur3.chr6             I 139 I 67
s proCoq1.NW_012152574v1     582743 190 +    730504 CTGCCCTCCTT--TCCCCACGTCCCACACACCGAGCCACGTGTTCATCTTCTTGGAGCTGCAGTGCTCCAGCTGCGGCAGGATAGAGACGTCAATATCTTCCTTCGGTTCCTCCTTGGCGAACGTCTAAGT-AAGAAATGGGCCACAGGACAGATGGCTGCCACCCTCC-----CCTGCCCT----CCTCAACTCTGCT--CAG
i proCoq1.NW_012152574v1   I 142 C 0
s otoGar3.GL873550            94617 191 +  18854210 CTGTCCTCCTT--TTTCCATGTCCCACACACCAAGCCACGTGTTCATCTTCTTGGAGCTGCAATGCTCCAGCTGGGGCAGGATAGAGACGTCAATATCTTCCTTTGGTTCCTCCTTGGCAAACGTCTAAGTGAGAAATGGGGCCACAGGACAGATGGTTGCCAACCACC-----CCTTCCCT----CCCCAACTCTGCT--CAG
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               57917166 185 -  94987271 CTCCCCTACCTCCCACCCACATCCCACACACCGAGCCATGTATTCATCTTCTTGGAGCTGCAGTGCTCCAGCTGGGGCAGAATGGAGACATCAATGTCTTCCTTTGGTTCCTCCTTGGCAAAAGTCTAAGGGAGAAAAAGGA--ACAGGATGAGTGACTGTGTTCTTGT-----CCAGCTCCTGAACCTCCA------------
i mm10.chr17               I 3 C 0
s canFam3.chr35            26215305 173 +  26524999 ---------------CCCACATTGCACACACCAAGCCAGGTGTTCATTTTCTTGGAGCTGCAGTGCTCCAGCTGGGGCAGGATGGACACATCAATATCTTCCTTTGGTTCCTCCTTGGCAAAAGTCTAAGGGAGAATCAGGGCCAAAGGGAAGACAGTGGTCACCCTCCTCGCGCCCCCTCT----GCTCAG------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            23934 169 +    102524 --------------ccgcccctcccacctacccagccACGTGTCCATCTTCTTGGAGCTGCAGTGCTCCAGCTGGGGCAGGATGGAGACGTCGATATCTTCCTTCGGCTCCTCCTTGGCGAACGTCTATGG-AGAAG---------AGGAAAGACGGTTGCCAGCCCCC-----GCTGCC------CCTCAGGTCTGCTCCCAG
i dasNov3.JH582591         C 0 C 0

a score=1013155.000000
s hg38.chr6_GL000254v2_alt   871947 83 +   4827813 TCTCTGGCTTCCAACTG-----------TTTTCCTATGAGACCCTCAATGCTGATGCCAAATCTCATTCTAGGCCTAAGAATGTTTTCCTGAAC
s panTro5.chr6             29834616 83 + 175400573 TCTCTGGCTTCCAACTG-----------TTTTCCTATGAGACCCTCAATGCTGATGCCAAATCTCATTCTAGGCCTAAGAATGTTTTCCTGAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30069442 83 + 173848474 TCTCTGGCTTCCAACTG-----------TTTTCCTATGAGACCCTCAATGCTGATGCCAAATCTCATTCTAGGCCTAAGAATGTTTTCCTGAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5875723 83 +   6154872 TCTCTGGCTTCCAACTG-----------TTTTCCTATGAGACCCTCAATGCTGATGCCAAATCTCATTCTAGGCCTAAGAATGTTTTCCTGAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74584570 83 + 122973662 TCTCTGGCTTCCAACTG-----------TTTTCCTATGAGACCCTCAATGCTGATGCCAAATCTCATTCTAGGCCTAAGAATGTTTTCCTGAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30065770 83 + 172585720 TCTCTGGCTTCCAGCTG-----------TTCTCCTATGAGACCCTCAATGCTGATGCCAAATCTCACTCCAGGCCTGAGAATGTTTTCCTGAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29728614 83 - 170955103 TCTCTGGCTTCCAGCTG-----------TTCTCCTATGAGACCCTCAATGCTGATGCCAAATCTCACTCCAGGCCTGAGAATGTTTTCCTGAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2774033 83 -   2996164 TCTCTGGCTTCCAGCTG-----------TTCTCCTATGAGACCCTCAATGCTGATGCCAAATCTCACTCCAGGCCTGAGAATGTTTTCCTGAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     527661 83 +    766320 TCTCTGGCTTCCAGCTG-----------TTCTCCTGTGAGACCCTCAATGCTGATGCCAAATCTCACTCCAGGCCTGAGAATGTTTTCCTGAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28984502 83 -  71996105 TCTCTGGCTTCCAGTTG-----------TTCTCCTATGAGACCCTCAATGCTGATGCCAAATCTCACTCCAGGCCTGAGAATGTTTTCCTGAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     160656 83 +    290775 TCTCTGGCTTCCAGCTG-----------TTCTCCTATGAGACCCTCAATGCTGATGCCAAATCTCACTCCAGGCCTGAGAATGTTTTCCTGAAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2619090 83 -   3067355 TCTCTGGCTTCCAGCTG-----------TTCTCCTATGAGACCCTCAATGCTGATGCCAAATCTCACTCCAGGCCTGAGAATGTTCTCCTGAAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30058326 82 + 171630274 TCTCTGGCTTCCAACTG-----------TTTTCCTTTGAGATCCTCAATACTGATGCCAAATCTCACTCTAGGCCTGGGAATG-TTTCCTGAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           206504 83 -    242197 TCTCTGGCTTCCAACTG-----------TTTTCCTTTGAGATCCTCAATACTGATGCCAAATCTCACTCTAGGCCTGGAAATGTTTTCCTGAAC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     199885 83 -   1771730 TCTCTGGCTTCCAACTG-----------TTTTCCTTTGAGATCCTCAATACTGACGCCAAATCTCACCCTAGGCCCGGGAATGTTTTCCTGAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     274247 83 -    457564 CCTCTGGCTTCCAACTG-----------TTTTCTTTTGAGAGCCTCAATACTGATGCCAAATCTCACTCTAGGCCTGGGAATGTTTTCCTGAAC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     582933 70 +    730504 CCCCTGACCCCCACC-------------CTGCCCTAGGAGACCCTCGATGCTGATGCCGACTCTCACTCCAGGCCTGAGCACA-----------
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            94808 88 +  18854210 TCCTTGACTCCCACCCACCCTGCCACCTCTTCCCTAGGAAACCCTC------AATGACAAATCTCACTCTAGGGCTGGGAACACTTTCCTGAAC
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57917351 74 -  94987271 CCTCTGCCTGT-----------------CTTCCCTATGAGA--CTCAGTACTG-TGCCAGATCCTACTCCAGGCCTGGGGACATCCTCCTGAAC
i mm10.chr17               C 0 I 1
s canFam3.chr35            26215478 36 +  26524999 CCCCTGGCCCCCAAGTC-----------TGCCTCTTT------------------------------------CCCAGGAACA-----------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            24103 69 +    102524 -CTCTGCCC-----CTT-----------CCTTCCTAGGAGACCCTCAGAACTGCTGCC-------ACTCCAGGCCTAGAAGCA-TTTCGTGAAC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                87768 67 + 123392446 I

a score=607318.000000
s hg38.chr6_GL000254v2_alt   872030 40 +   4827813 -CCTTGGAGGTGCTTGTTCCCCA-CTTTCCCTGATGCCTGGA
s panTro5.chr6             29834699 40 + 175400573 -CCTTGGAGGTGCTTGTTCCCCA-CTTTCCCTGATGCCTGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30069525 40 + 173848474 -CCTTGGAGGTGCTTGTTCCCCA-CTTTCCCTGATGCCTGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5875806 39 +   6154872 -CCTTGGAGGTGCTTGTTCCCCA-CTTTCCCTGACGCCT-GA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74584653 40 + 122973662 -CCTTGGAGGTGCTTGTTCCCCA-CTTTCCCTGACACCTGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30065853 40 + 172585720 -CCTTGCAGGTGCTTGTTCCCCA-CTTGCCCTGATGCCTTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29728697 40 - 170955103 -CCTTGCAGGTGCTTGTTCCCCA-CTTGCCCTGATGCCTTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2774116 40 -   2996164 -CCTTGCAGGTGCTTGTTCCCCA-CTTGCCCTGATGCCTTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     527744 40 +    766320 -CCTTGCAGGTGCTTGTCCCCCA-CTTTCCCTGATGCCTGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28984585 40 -  71996105 -CCTTGCAGGTGCTTGTTCCCCA-CTTTCCCTGATGCCTGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     160739 40 +    290775 -CCTTGCAGGTGCTTGTTCCCCA-CTTTCCCTGATGCCTGGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2619173 40 -   3067355 -CCTTGCAGGTGCTTGTTCCCCA-CTTTCCCTGATGCCTGGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30058408 40 + 171630274 -CCTTGGAGGTACTTGTTCCCCA-CTTACCCTGATGCCTGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           206587 40 -    242197 -CTTTGGAGGTACTTGTTCCCCA-CTTTCCCTGATGCCTGAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     199968 39 -   1771730 -CCTTGGA-GTACTTGTTCCCCA-CTTTCCCTGATCCCTGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     274330 40 -    457564 -CCTTGGAGGTACTTGTTCCCCA-CTTTCCCTGATGCTTGAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                87835 40 + 123392446 -CCTTGGAACTGCTTGTTCCCCA-CTTTTCCCGATGCCTGGA
i micMur3.chr6             I 67 I 189
s proCoq1.NW_012152574v1     583003 40 +    730504 -CCTTGGAAGTACTTGTTCCCCA-CTTTTCCCGATGCCTGGA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            94897 40 +  18854210 -CCTCAGAAGTGCTTGTTCCCCA-CTTTTCCCAATGCCTGGA
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57917426 39 -  94987271 -CACTAGAACGGTTTGCT-CCCA-CTTTCCCCAAGGCTCGGG
i mm10.chr17               I 1 C 0
s canFam3.chr35            26215514 41 +  26524999 -CCTCAGAACTGCTTGTCTGCCAGCTTTCCATGATGCCCAGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            24172 41 +    102524 TCACTGGGAGCATCAGCACCCCA-CTTTCCACGTTGCCTGGA
i dasNov3.JH582591         C 0 C 0

a score=1165176.000000
s hg38.chr6_GL000254v2_alt   872070  90 +   4827813 AGTTCTACACACCCTTCCCAGATTCCCACCCCTTCCTTTCTTCAGCT-------------------------GAATCTGGAGGCCTATGAG-GGG-CTCCTTCTAGGAAGGAAAGGA
s panTro5.chr6             29834739  90 + 175400573 AGTTCTACACACCCTTCCCAGATCCCCACCCCTTCCTTTCTTCAGCT-------------------------GAATCTGGAGGCCTATGAG-GGG-CTCCTTCTAGGAAGGAAAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30069565  90 + 173848474 AGTTCTACACACCCTTCCCAGATCCCCACCCCTTCCTTTCTTCAGCT-------------------------GAATCTGGAGGCCTATGAG-GGG-CTCCTTCTAGGAAGGAAAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5875845  90 +   6154872 AGTTCTACACACCCTTCCCAGATCCCCACCCCTTCCTTTCTTCAGCT-------------------------GAATCTGGAGGCCTATGAG-GGG-CTCCTTCTAGGAAGGAAAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74584693  90 + 122973662 AGTTCTACACACCCTTCCCAGATCCTCACCCCTTCCTTTCTTCAGCT-------------------------GAATCTGGAGGCCTATGAG-GGG-CTCCTTCTAGGAAGGAAAGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30065893 115 + 172585720 AGTTCTACACACCCTTCCCAGATCCCCACCCCTTCCTTTCTTCAGTTATCTGGAGGAATCTTTCTTTCTTCAGAATCTGGAGGCCTATGAG-GGG-CTCCTTCCAGGAAGGAAAGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29728737 115 - 170955103 AGTTCTACACACCCTTCCCAGATCCCCACCCCTTCCTTTCTTCAGTTATCTGGAGGAATCTTTCTTTCTTCAGAATCTGGAGGCCTATGAG-GGG-CTCCTTCCAGGAAGGAAAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2774156 115 -   2996164 AGTTCTACACACCCTTCCCAGATCCCCACCCCTTCCTTTCTTCAGTTATCTGGAGGAATCTTTCTTTCTTCAGAATCTGGAGGCCTATGAG-GGG-CTCCTTCCAGGAAGGAAAGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     527784 115 +    766320 AGTTCTACACACCCTTCCCAGATCCCCACCCCTTCCTTTCTTCAGTTATCTGGAGGAATCTTTCTTTCTTCAGAATCTGGAGGCCTATGAG-GGG-CTCCTTCTAGGAAGGAAAGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28984625 115 -  71996105 AGTTCTACACACCCTTCCCAGATCTCCACCCCTTCCTTTCTTCAGTTATCTGGAGGAACCTTTCTTTCTTCAGAATCTGGAAGCCTATGAG-GGG-CTCCTTCTAGGAAGGAAAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     160779 115 +    290775 AGTTCTACACACCCTTCCCAGATCCCCACCCCTTCCTTTCTTCAGTTATCTGGAGGAATCTTTCTTTCTTCAGAATCTGGAGGCCTATGAG-GGG-CTCCTTCTAGGAAGGAAAGGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2619213 115 -   3067355 AGTTCTACACACCCTTCCCAGATCCCCACCCCTTCCTTTCTTCAGCTATCTGGAGGAATCTTTCTTTCTTCAGAATCTGGAGGCCTATGAG-GGG-CTCCTTCTAGGAAGGAAAGGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30058448  90 + 171630274 AACTCTACACACCCTTCCCAGATCCCCACCCCTTTCTTTCTTCAGTT-------------------------GAATCTGGAGGCCTACAAG-AGG-TTCCTTCCAGGAAGGAAAGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           206627  90 -    242197 AATTCAACACACCCTTCCCAGATCCCTACCCCTTTCTTTCTTCAGTT-------------------------GAATCTGGAGGCCTACAAG-AGG-CTCCTTCCAGGAAGGAGAGGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     200007  90 -   1771730 AATTCTACACAACCTTCCCAGATCCCCACCCCTTTCTTTCTTCAGTT-------------------------GAATCTGCAGGCCTACAAA-AGG-CTCCTTCCCGGAAGGAGAGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     274370  90 -    457564 AATTCAACACACCCTTCCCAGATCCCCACCCCTTTCTTTCTTCAGTT-------------------------GAATCTGGAGGCCTACAAG-AGG-CTCCTTCCAGGAAGGAGAGGA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     583043  87 +    730504 AATGCTACA-GCCCTCCT--AGGCCCCACCACTCCCTTTCTTCAGAT-------------------------GGAGCCAGAGGCCTCTGGC-AGG-CTCCTTCCAGGAAGGAGAGGA
i proCoq1.NW_012152574v1   C 0 I 25
s otoGar3.GL873550            94937  88 +  18854210 AATTCTACACACCCTTCTCAAATCCCCACCACTTCCCTTCTTCAGAT-------------------------GAGTCCAGAGGCCTCTAGTGGGG-CTACCTCTAGGAAGAACA---
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57917465  87 -  94987271 GACCCTACACATCCT-CCCAGGTCTCTG--ACTTCCCTTCTTCAGAT-------------------------AAACCTAGAAGCTTCCGAG-AAG-CTCCATCTGGCAAAGACAGAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26215555  89 +  26524999 AAGTCTACACATCCTTCCTGGATCCCCACC-CTGCCTTTCTCCAGC--------------------------AAACCCAAAGGTTCCCGCT-AGGATTCCTTACAGGAAGGGGGTGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            24213  71 +    102524 AATTCCACGCACCTT------AGCGCCCCCACGTCCTTTCTTCAGAA-------------------------GGACCC-----------AG-AGG-CGCCTGCC-GGAAGGAGGGG-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                87875 189 + 123392446 I

a score=199891.000000
s hg38.chr6_GL000254v2_alt   872160 19 +   4827813 AGAGCTTCC-AATACG-AGGA
s panTro5.chr6             29834829 19 + 175400573 AGAGCTTCC-AATACG-AGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30069655 19 + 173848474 AGAGCTTCC-AATACG-AGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5875935 19 +   6154872 AGAGCTTCC-AATACG-AGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74584783 19 + 122973662 AGAGCTTCC-AATACG-AGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30066008 19 + 172585720 AGAGCTTCC-AATATG-AGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29728852 19 - 170955103 AGAGCTTCC-AATATG-AGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2774271 19 -   2996164 AGAGCTTCC-AATATG-AGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     527899 19 +    766320 AGAGCTTCC-GATATG-AGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28984740 19 -  71996105 AGAGCTTCC-AGTACG-AGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     160894 19 +    290775 AGAGCTTCC-GATATG-AGGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2619328 19 -   3067355 AGAGCTTCC-GATATG-AGGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30058538 20 + 171630274 AGAGGTTCC-AATATGAAAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           206717 19 -    242197 AGAGCGTCC-AATATG-AGGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     200097 19 -   1771730 AGAGCTTCC-AATATG-AGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     274460 19 -    457564 AGAGCTTCC-AATATG-AGGA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            95025 17 +  18854210 --CATTTCC-AATATG-CAAA
i otoGar3.GL873550         C 0 I 7
s mm10.chr17               57917552 18 -  94987271 ---GCACCCTAATATATAGGA
i mm10.chr17               C 0 I 6
s canFam3.chr35            26215644 18 +  26524999 -GGGCTGCC-AACAGG-CACA
i canFam3.chr35            C 0 I 8
e micMur3.chr6                87875 189 + 123392446 I
e dasNov3.JH582591            24284  0 +    102524 C
e proCoq1.NW_012152574v1     583130 25 +    730504 I

a score=323388.000000
s hg38.chr6_GL000254v2_alt   872179 25 +   4827813 AGGCACTC--TCTCCAAGTAGCTTCAT
s panTro5.chr6             29834848 25 + 175400573 AGGCACTC--TCTCCAAGTAGCTTCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30069674 25 + 173848474 AGGCACTC--TCTCCAAGTAGCTTCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5875954 25 +   6154872 AGGCACTC--TCTCTAAGTAGCTTCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74584802 25 + 122973662 AGGCACTC--TCTCCAAGTAGCTTCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30066027 25 + 172585720 AGGCACTC--TCACCAAGTAGCTTCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29728871 25 - 170955103 AGGCACTC--TCACCAAGTAGCTTCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2774290 25 -   2996164 AGGCACTC--TCACCAAGTAGCTTCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     527918 25 +    766320 AGGCACTC--TCACCAAGTAGCTTCAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28984759 25 -  71996105 AGGCACTC--TCACCAAGTAGCTTCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     160913 25 +    290775 AGGCACTC--TCACCAAGTAGCTTCAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2619347 25 -   3067355 AGGCACTC--TCACCAAGTAGCTTCAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30058558 25 + 171630274 AGGCACTC--TCACCAAGTAGCTTCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           206736 25 -    242197 AGGCACTC--TCACCAAGTAGCTTCAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     200116 25 -   1771730 AGGCACTC--TCACCAAGTAGCTTCAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     274479 25 -    457564 AGGCACTC--TCACCAAGTAGCTTCAC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     583155 25 +    730504 AGGCACTC--TCACCAAGCAGCTGTGT
i proCoq1.NW_012152574v1   I 25 C 0
s otoGar3.GL873550            95049 27 +  18854210 AGACACTCTTTCACCAAAGAGTTGTAT
i otoGar3.GL873550         I 7 C 0
s mm10.chr17               57917576 25 -  94987271 AAGTTCTC--TCCTGGAGCAGCTTCCt
i mm10.chr17               I 6 I 161
s canFam3.chr35            26215670 19 +  26524999 AGGCACCC--CTCACAAGCAG------
i canFam3.chr35            I 8 C 0
s dasNov3.JH582591            24284  6 +    102524 --GCACCC-------------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                87875 189 + 123392446 I

a score=636828.000000
s hg38.chr6_GL000254v2_alt   872204 55 +   4827813 CCCTCAAGA-CACACACAGCCCCAGGGCC-CTGATGGCCACTGAGCCCTGCTCATTC
s panTro5.chr6             29834873 56 + 175400573 CTCTCAAGACCACACACAGCCCCAGGGCC-CTGATGGCCACTGAGCCCTGCTCATTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30069699 56 + 173848474 CTCTCAAGACCACACACAGCCCCAGGGCC-CTGATGGCCACTGAGCCCTGCTCATTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5875979 56 +   6154872 CCCTCAAGATCACACACAGCCCCAGGGCC-CTGATGGCCACTGAGCCCTGCTCATTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74584827 56 + 122973662 CCCTCAAGACCACACACAGCCCCAGGGCC-ATGATGGCCATTGAGCCCTGCTCATTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30066052 55 + 172585720 CCCTCAAGACCACACACAACCCC-GGGCC-CTGATGGCCACTGAGTCCTGCTCATTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29728896 55 - 170955103 CCCTCAAGACCACACACAACCCC-GGGCC-CTGATGGCCACTGAGTCCTGCTCATTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2774315 55 -   2996164 CCCTCAAGACCATACACAACCCC-GGGCC-CTGATGGCCACTGAGTCCTGCTCATTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     527943 55 +    766320 CCCTCAAGACCACACACAACCCC-GGGCC-CTGATGGCCACTGAGCCCTGCTCATTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28984784 55 -  71996105 CCCTCAAGACCACACACAACCCC-GGGCC-CCGATGGCCACTGAGCCCTGCTCATTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     160938 55 +    290775 CCCTCAAGACCACACACAACCCC-GGGCC-CTGATGGCCACTGAGCCCTGCTCATTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2619372 56 -   3067355 CCCTCAAGACCACACACAACCCCTGGGCC-CTGATGGCCACTAAGCCCTGCTCATTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30058583 56 + 171630274 CCCTCAAGACCACACACAGCCCTGGGGCC-CTAATGGCCAGTGAGCCCTGCTCATTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           206761 56 -    242197 CCGTCAAGACCACACACAGCCCTGGGGCC-CTAATGGCCTGTAAGCCCTGCTCATTC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     200141 56 -   1771730 CCATCAAGACCACACACAGCCCTGGGGCC-CTAATGGCCAGTAAGCCCTGCTCATTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     274504 56 -    457564 CCGTCGAGACCACACACAGCCCTGGGGCC-CTAATGGCCAGTAAGCCCTGTTCATTC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     583180 54 +    730504 CCCTCAAGGC--CACATGGCCCCAGGGCC-CTGCTGGCCAGTGAGCCCCACTCAGCC
i proCoq1.NW_012152574v1   C 0 I 13
s otoGar3.GL873550            95076 54 +  18854210 CCCTCAAGATCACACATATCTCCAGGGCC-TTCATAGCCAGTGAACCCCACTCAG--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57917762 55 -  94987271 CCTTCAGGAGCACATACAGCCCCGGAGATGCTGA--GCTGGTGAGCCCTATCTAGTT
i mm10.chr17               I 161 C 0
s canFam3.chr35            26215689 37 +  26524999 ------GAACCAC-----------CAGCA-ACAATCACCAGGGAGCCCCACTCGC--
i canFam3.chr35            C 0 C 0
e micMur3.chr6                87875 189 + 123392446 I
e dasNov3.JH582591            24290  0 +    102524 C

a score=108682.000000
s hg38.chr6_GL000254v2_alt   872259 7 +   4827813 TCCTGAC
s panTro5.chr6             29834929 7 + 175400573 TCCTGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30069755 7 + 173848474 TCCTGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5876035 7 +   6154872 TCCTGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74584883 7 + 122973662 TCCTGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30066107 7 + 172585720 TCCTGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29728951 7 - 170955103 TCCTGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2774370 7 -   2996164 TCCTGAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     527998 7 +    766320 TCCTGAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28984839 7 -  71996105 TCCTGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     160993 7 +    290775 TCCTGAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2619428 7 -   3067355 TCCCGAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30058639 7 + 171630274 TCCTGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           206817 7 -    242197 TCCTGAC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     200197 7 -   1771730 TCCTGAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     274560 7 -    457564 TCCTGAC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            95130 6 +  18854210 -CCTGAC
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               57917817 7 -  94987271 TCCTGAC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26215726 6 +  26524999 -CCTGAC
i canFam3.chr35            C 0 C 0
e micMur3.chr6                87875 189 + 123392446 I
e dasNov3.JH582591            24290 0 +    102524 C
e proCoq1.NW_012152574v1     583234 13 +    730504 I

a score=23632.000000
s hg38.chr6_GL000254v2_alt   872266 4 +   4827813 CATA
s panTro5.chr6             29834936 4 + 175400573 CATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30069762 4 + 173848474 CATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5876042 4 +   6154872 CATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74584890 4 + 122973662 CATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30066114 4 + 172585720 CACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29728958 4 - 170955103 CACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2774377 4 -   2996164 CACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     528005 4 +    766320 CACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28984846 4 -  71996105 CACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     161000 4 +    290775 CACA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2619435 4 -   3067355 CACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30058646 4 + 171630274 CGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           206824 4 -    242197 CGCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     200204 4 -   1771730 CACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     274567 4 -    457564 CTCA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     583247 2 +    730504 CA--
i proCoq1.NW_012152574v1   I 13 C 0
s otoGar3.GL873550            95138 2 +  18854210 CA--
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               57917824 4 -  94987271 CCCA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26215732 4 +  26524999 CTCG
i canFam3.chr35            C 0 C 0
e micMur3.chr6                87875 189 + 123392446 I
e dasNov3.JH582591            24290 0 +    102524 C

a score=6353395.000000
s hg38.chr6_GL000254v2_alt   872270 349 +   4827813 GCACCTCCTCT--CCAGTGGTACCTCAATGGTCCGGTGCAGAGGGTCCACGATCTGCCAGATGGCGAGAGTGAGGACATCCATGCCCACCAGCAGGCCCACTGTGGCATACAGCTTCCAGGGTTCCAGAGTCTGGATAAATATGTGG-GGAGAACAGGCACGTCAGGGGAAAATGCTCTGTGC-CCCAGGAG-CCAAGGATCT------GGGGGCTGAGGATTGGGCAGCAGCTCACCTTCCTCCACTCCTTCTTTTCTTCCTTCTTTGTGAAGACCGTGTGGACCCACCAAATCTTGGTGAACATGGAACCGTAGCCCAGACTAAAGCCCAGGCCCAGGAGCCAGAGGCGGGCCTAGAA
s panTro5.chr6             29834940 349 + 175400573 GCACCTCCTCT--CCAGTGGTACCTCAATGGTCCGGTGCAGAGGGTCCACGATCTGCCAGATGGCGAGAGTGAGGACATCCATGCCCACCAGCAGGCCCACTGTGGCATACAGCTTCCAGGGTTCCAGAGTCTGGATAAATATGTGG-GGAGAACAGGCACGTCAGGGGAAAATGCTCTGTGC-CCCAGGAG-CCAAGGATCT------GGGGGCTGAGGATTGGGCAGCAGCTCACCTTCCTCCACTCCTTCTTTTCTTCCTTCTTTGTGAAGACCGTGTGGACCCACCAAATCTTGGTGAACATGGAACCGTAGCCCAGACTAAAGCCCAGGCCCAGGAGCCAGAGGCGGGCCTAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30069766 349 + 173848474 GCACCTCCTCT--CCAGTGGTACCTCAATGGTCCGGTGCAGAGGGTCCACGATCTGCCAGATGGCGAGAGTGAGGACATCCATGCCCACCAGCAGGCCCACTGTGGCATACAGCTTCCAGGGTTCCAGAGTCTGGATAAATATGTGG-GGAGAACAGGCACGTCAGGGGAAAATGCTCTGTGC-CCCAGGAG-CCAAGGATCT------GGGGGCTGAGGATTGGGCAGCAGCTCACCTTCCTCCACTCCTTCTTTTCTTCCTTCTTTGTGAAGACTGTGTGGACCCACCAAATCTTGGTGAACATGGAACCGTAGCCCAGACTAAAGCCCAGGCCCAGGAGCCAGAGGCGGGCCTAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5876046 349 +   6154872 GCACCTCCTCT--CCAGTGGTACCTCAATGGTCCGGTGCAGAGGGTCCACGATCTGCCAGATGGCGAGAGTGAGGACATCCATGCCCACCAGCAGGCCCACTGTGGCATACAGCTTCCAGGGTTCCAGAGTCTGGATAAATATGTGG-GGAGAACAGGCACGTCAGGGGGAAATGCTCTGTGC-CCCAGGAG-CCAAGGATCT------GGGGGCTGAGGATTGGGCAGCAGCTCACCTTCCTCCACTCCTTCTTTTCTTCCTTCTTTGTGAAGACCGTGTGGACCCACCAAATCTTGGTGAACATGGAACCGTAGCCCAGACTAAAGCCCAGGCCCAGGAGCCAGAGGCGGGCCTAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74584894 349 + 122973662 GCACCTCCTCT--CCAGCGGTACCTCAATGGTCCGGTGCAAAGGGTCCACGATCTGCCAGATGGCGAGAGTGAGGACATCCATGCCCACCAGCAGGCCCACTGTGGCATACAGCTTCCAGGGTTCCAGAGTCTGGATAAATATGTGG-GGAGAACAGGCATGCCAGGGGAAAATGCTCTGTGC-CCCAGGAG-CCAAGGATCT------GGGGGATGAGGATTGGGCAGCAGCTCACCTTCCTCCACTCCTTCTTTTCTTCCTTCTTTGTGAAGACCGTGTGGACCCACCAAATCTTGGTGAACATGGAACCGTAGCCCAGACTAAAGCCCAGGCCCAGGAGCCAGAGGCGGGCCTGGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30066118 349 + 172585720 GCACCTCCTCT--CCAGCGGTACCTCAATGGTTCGATGCAAAGGGTCCACAATCTGCCAGATGGCAAGAGTGAGGACATCCATGCCCACCAGCAGGCCCACTGTGGCATACAGCTTCCAGGGTTCCAGAGTCTGGATAAATATGTGG-GGAGAACAGGCACATCAGGCAAAAATGCTCTGTGC-CCCAGGAG-CCAAGGATCT------GGGGGCTAAGTATTGGGCAGCAACTCACCTTTCTCCACTCCTTCTTTTCTTCCTTCTTTGTGAAGACCGTGTGGACCCACCAAATCTTGGTGAACATGGAGCCATAGCCCAGACTAAAACCCAGGCCCAGGAGCCAGAGGCGGGCCTAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29728962 349 - 170955103 GCACCTCCTCT--CCAGCGGTACCTCAATGGTTCGATGCAAAGGGTCCACAATCTGCCAGATGGCAAGAGTGAGGACATCCATGCCCACCAGCAGGCCCACTGTGGCATACAGCTTCCAGGGTTCCAGAGTCTGGATAAATATGTGG-GGAGAACAGGCACATCAGGCAAAAATGCTCTGTGC-CCCAGGAG-CCAAGGATCT------GGGGGCTAAGTATTGGGCAGCAACTCACCTTTCTCCACTCCTTCTTTTCTTCCTTCTTTGTGAAGACCGTGTGGACCCACCAAATCTTGGTGAACATGGAGCCATAGCCCAGACTAAAACCCAGGCCCAGGAGCCAGAGGCGGGCCTAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2774381 349 -   2996164 GCACCTCCTCT--CCAGCGGTACCTCAATGGTTCGATGCAAAGGGTCCACAATCTGCCAGATGGCAAGAGTGAGGACATCCATGCCCACCAGCAGGCCCACTGTGGCATACAGCTTCCAGGGTTCCAGAGTCTGGATAAATATGTGG-GGAGAACAGGCACATCAGGCAAAAATGCTCTGTGC-CCCAGGAG-CCAAGGATCT------GGGGGCTAAGTATTGGGCAGCAACTCACCTTTCTCCACTCCTTCTTTTCTTCCTTCTTTGTGAAGACCGTGTGGACCCACCAAATCTTGGTGAACATGGAGCCATAGCCCAGACTAAAGCCCAGGCCCAGGAGCCAGAGGCGGGCCTAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     528009 349 +    766320 GCACCTCCTCT--CCAGCGGTACCTCAATAGTTCGATGCAAAGGATCCACAATCTGCCAGATGGCGAGAGTGAGGACATCCATGCCCACCAGCAGGCCCACTGTGGCATACAGCTTCCAGGGTTCCAGAGTCTGGATAAATATGTGG-GGAGAACAGGCACATCAGGCAAAAATGCTCTGTGC-CCCAGGAG-CCAAGGATCT------GGGGGCTAAGGATTGGGCAGCAACTCACCTTTCTCCACTCCTTCTTTTCTTCCTTCTTTGTGAAGACCGTGTGGACCCACCAAATCTTGGTGAACATGGAGCCATAGCCCAGACTAAAGCCCAGGCCCAGGAGCCAGAGGCGGGCCTAGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28984850 349 -  71996105 GCACCTCCTCT--CCAGTGGTACCTCAATGGTTCGATGCAAAGGGTCCACAATCTGCCAGATGGCGAGAGTGAGGACATCCATGCCCACCAGCAGGCCCACTGTGGCATACAGTTTCCAGGGTTCCAGAGTCTGGATAAATATGTGG-GGAGAACAGGCACATCAGGCAAAAATGCTCTGTGC-CCCAGGAG-CCAAGGATCT------GGGGGCTAAGGATTGGGCAGCAACTCACCTTTCTCCACTCCTTCTTTTCTTCCTTCTTTGTGAAGACCGTGTGGACCCACCAAATCTTGGTGAACATGGAGCCATAGCCCAGACTAAAGCCCAGGCCCAGGAGCCAGAGGCGGGCCTAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     161004 349 +    290775 GCACCTCCTCT--CCAGCGGTACCTCAATAGTTCGATGCAAAGGATCCACAATCTGCCAGATGGCGAGAGTGAGGACATCCATGCCCACCAGCAGGCCCACTGTGGCATACAGCTTCCAGGGTTCCAGAGTCTGGATAAATATGTGG-GGAGAACAGGCACATCAGGCAAAAATGCTCTGTGC-CCCAGGAG-CCAAGGATCT------GGGGGCTAAGGATTGGGCAGCAACTCACCTTTCTCCACTCCTTCTTTTCTTCCTTCTTTGTGAAGACCGTGTGGACCCACCAAATCTTGGTGAACATGGAGCCATAGCCCAGACTAAAGCCCAGGCCCAGGAGCCAGAGGCGGGCCTAGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2619439 349 -   3067355 GCACCTCCTCT--CCAGCGGTACCTCAATGGTTCGATGCAAAGGGTCCACAATCTGCCAGATGGCGAGAGTGAGGACATCCATGCCCACCAGCAGGCCCACTGTGGCATATAGCTTCCAGGGTTCCAGAGTCTGGATAAATATGTGG-GGAGAACAGGCACATTAGGCGAAAATGCTCTGTGC-CCCAGGAG-CCAAGGATCA------GGGGGCTAAGGTTTGGGCAGCAACTCACCTTTCTCCACTCCTTCTTTTCTTCCTTCTTTGTGAAGACCGTGTGGACCCACCAAATCTTGGTGAACATGGAGCCATAGCCCAGACTAAAGCCCAGGCCCAGGAGCCAGAGGCGGGCCTAGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30058650 349 + 171630274 GCACCTTCTCT--CCAGCAGTACCTCAATGGTCCGGTGCAAAGGGTCCACGATCTGCCAGATGGCGAGAGTGAGGACATCCATGCCCACCAGCAGGCCCACAGTGGCATACAGCTTCCAGGGCTCCAGAGTCTGGATAAATACGTGG-GGAGCACAGGCACATCAGGGGAAAATGCTTTGTGC-CCCAGGAG-CCAAGGATTT------GGGAACTGAGGATTGGGCAGCAGCTCACCTTCCTCCACTCCTTCTTTTCTTCCTTCTTTGTGAAGACTGTGTGGACCCACCAAATCTTGGTGAACATGGAGCCATAGCCCAGACTAAAGCCCAGGCCCAGGAGCCAGAGGCGGGCCTAGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           206828 349 -    242197 GCACCTTCTCT--CCAGCAGTACCTCAATGGTCCGGTGCAAAGGGTCCACGATCTGCCAGATGGCGAGAGTGAGGACATCCATGCCCACCAGCAGGCCCACGGTGGCATACAGCTTCCAGGGCTCCAGAGTCTGGATAAATATGTGG-GGAGCACAGGCACATCGGGGGAAAATGCTTTGTGC-CCCAGGAG-CCAAGGATTT------GGGGACTGAGGATTGGGCAGCAGCTCACCTTCCTCCACTCCTTCTTTTCTTCCTTCTTTGTGAACACCGTGTGGACCCACCAAATCTTGGTGAACATGGAGCCATAGCCCAGACTAAAGCCCAGGCCCAGGAGCCAGAGGCGGGCCTAGAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     200208 349 -   1771730 GCACCTTCTCT--CCAGCAGTACCTCAATGGTCCGGTGCAAAGGGTCCACGATCTGCCAGATGGCGAGAGTGAGGACATCCATGCCCACCAGCAGGCCCACGGTGGCATACAGCTTCCAGGGCTCCAGAGTCTGGATAAATATGTGG-GGAGCACAGGCACATCGGGGGAAAATGCTTCATGC-CCCAGGAG-CCAAGGATTT------GGGGACTGAGGATTGGGCAGCAGCTCAccttcctccattccttcttttcttccttctttGTGAAGACCGTGTGGACCCACCAAATCTTGGTGAACATGGAGCCATACCCCAGACTAAAGCCCAGGCCCAGGAGCCAGAGGCGGGCCTAGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     274571 349 -    457564 GCACCTTCTCT--CCAGCAGTACCTCAATGGTGCGGTGCAAAGGGTCCACGATCTGCCAGATGGCGAGAGTGAGGACATCCATGCCCACCAGCAGGCCCACGGTGGCATACAGCTTCCAGGGCTCCAGAGTCTGGATAAATATGTGG-GGAGCACAGGCACATCGGGGGAAAATGCTTCATGC-CCCAGGAG-CCAAGGATTT------AGGGACTGAGGATTGGGCAGCAGCTCACCTTCCTCCACTCCTTCTTTTCTTCCTTCTTTGTGAAGACTGTGTGGACCCACCAAATCTTGGTGAACATGGAGCCATAGCCCAGACTAAAGCCCAGGCCCAGGAGCCAGAGGCGGGCCTAGAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                88064 346 + 123392446 GCACCTCCTCT---CAACGGTACCTCAATGGTCCGGTGCAAAGGGTCCATGATCTGCCAGATGGCGAGAGTGAGGACGTCCATGCCCACCAGTAGCCCCACCGTGGCATACAGCTTCCAGGGCTCCAAGGTCTGGGCAAGCACATG--GGGGCACAGGCACGTCAGGGGAAAATCCTCTGAGC-CCCAGGAG-CAGAGGAGCT------GA-GGCTGAGGACTGGGAAACAGCTCACCTTCCTCCACTCCTTCTTTTCCTCCTTCTTTGTGAAGACCGTGTGGACCCACCAGATCTTGGTGAACATAGAGCCGTAGCCCAGACTGAAGCCCAGGCCTAGGAGCCAGAGGCGGGCCTAGAA
i micMur3.chr6             I 189 I 1377
s proCoq1.NW_012152574v1     583249 346 +    730504 GCGCCTCCTCT---CAGCGGTACCTCAATGGTCCGGTGCAAAGGGTCCACAATCTGCCAGATGGCGAGAGTGAGGACGTCCATGCCGACCAGCAGGCCCACCGTAGCATACAGCTTCCAGGGCTCTAGGGTCTGGGCAAGCACACA--GGGGCACGGACATGTCAGGGGGAAATCCTCTGAGC-CCCAGGAG-CCGAGGAGCT------GA-GGCTGAGGATAGGGAAGCAGCTCACCTTCCTCCACTCCTTCTTTTCCTCCTTCTTTGTAAAGACCGTGTGGACCCACCAGATCTTGGTGAACATGGAGCCGTAGCCCAGACTAAAGCCCAGGCCCAGGAGCCAGAGGCGGGCCTAGAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            95140 349 +  18854210 GAGCCTCCTAT---AAGCAGTACCTCAATGGTCCGGTGCAAAGGATCCACAATCTGCCAGATTGCGAGTGTGAGGACATCCATGCCCACCAGCAGGCCCACCGTGGCATACAGCTTCCAGGGCTCGAGGGTCTGGGCAAGTACATAGTGGGGCACAGGCATATCAGAGAAAAATCTTCTAAGC-CCCAAGAG-CCAAGGAGCT------GAGGGCTAAGGACTAGGAAACAGCTGACCTTCCTCCACTCCTTCTTTTCCTCCTTCTTTGTGAAGACCGTGTGGACCCACCAGATCTTGGTGAACATGGAGCCATAACCCAGACTAAAGCCCAGGCCCAGAAGCCAGAGGCGGGCCTAGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57917828 338 -  94987271 GCAACTCCTCGAGTGATAGATACCTCAATGGTTCGGTGCAAGGGGTCCACAATCTGCCAGATGGCAAGAGTCAGGATATCCATGCCCACCAGCAGGCCTACAGTGGCGTACAGTTTCCAAGGCTCTAGGGTCTGAGTAGACAGCCAG-AGAAGACAGG----TCAGAAGGAGGTCTTCTCTATGCCTAGGAT-CAAAGGCTGC------GT----------CTGGGAAGTAGCTCACCTTCCTCCATTCCTTCTTCTCCTCCTTCTTTGTGAAGACTGTGTGGACCCACCAGATCTTGGTGAACATAGAGCCATAGCCCAGACTAAAGCCTAAGCCCAAGAGCCAAAGGCGGGCCTAGAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26215736 340 +  26524999 GGGCCTCCTCT--CAGCTGGTACCTCAATGGTCCGGTGCAAGGGGTCTACCATCTGCCAAATGGCAAGAGTGAGGACATCCATGCCCACTAGCAAGCCCACTGTGGTGTACAGCTTCCAGGGCTCCAGGGTCTAGATAAAC-------AGAGCATGGGTGAGTCAGGGAAGCTCCCTCGG----CCCCGGAG-CCAGAGCCCT------CCAGGCTGGGGGTTAGGAAGCCAATCACCTTCCTCCACTCCTTCTTCTCCTCCTTCTTAGTGAAGACCGTGTGGACCCACCAGATCTTCGTGAACATGGAGCCATAGCCCAGACTGAAGCCCAGACCCAGGAGCCAGAGGCGTGCCTAGGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            24290 338 +    102524 ----CACCCCC--CCAATGGTACCTCGATGGTCCGATGCAGGGGGTCCACGATCTGCCAGATGGCCAGGGTGAGCACGTCCATGCCCACCAGCAGGCCCACCGTGGCGTACAGCTTCCAGGGCTCCAGGGTCTGCGC---------G-GATACACAGGCCCGTCAGGGGGA---GCCCTCCAG-CCCAGGGGTCCCAGGAGCCCCCGGGAGGGGCCGTGGG--AGGGAGCAGCTCACCTTCCTCCACTCCTTCTTCTCCTCCTTCTTTGTGAAGACTGTGTGGACCCACCAGATCTTGGTGAACATGGAGCCATAGCCCAGGCTGAAGCCCAGGCCCAGGAGCCAGAGGCGGGCCTGGGG
i dasNov3.JH582591         C 0 C 0

a score=88980.000000
s hg38.chr6_GL000254v2_alt   872619 8 +   4827813 AGGAAGAG
s panTro5.chr6             29835289 8 + 175400573 AAGAAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30070115 8 + 173848474 AAGAAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5876395 8 +   6154872 AAGAAGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74585243 8 + 122973662 AGGAAGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30066467 8 + 172585720 AAGAAGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29729311 8 - 170955103 AAGAAGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2774730 8 -   2996164 AAGAAGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     528358 8 +    766320 AAGAAGAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28985199 8 -  71996105 AAGAAGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     161353 8 +    290775 AAGAAGAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2619788 8 -   3067355 AAGAAGAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30058999 8 + 171630274 AACAAGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           207177 8 -    242197 AACAAGAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     200557 8 -   1771730 AACAAGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     274920 8 -    457564 AACAAGAA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     583595 8 +    730504 GGGTAGAC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            95489 8 +  18854210 GAGTAGAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57918166 8 -  94987271 GGGGAGAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26216076 6 +  26524999 --CAGGAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            24628 8 +    102524 AGGGAGGG
i dasNov3.JH582591         C 0 M 614
e micMur3.chr6                88410 1377 + 123392446 I

a score=235212.000000
s hg38.chr6_GL000254v2_alt   872627 19 +   4827813 AGGGCACAGGCAGAACAGG
s panTro5.chr6             29835297 19 + 175400573 AGGGCACAGGCAGAACAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30070123 19 + 173848474 AGGGCACAGGCAGAACAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5876403 19 +   6154872 AGGGCACAGGCAGAACAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74585251 19 + 122973662 AGGGCACAGGCAGAACGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30066475 19 + 172585720 AGGGCACAGGCAGAATAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29729319 19 - 170955103 AGGGCACAGGCAGAATAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2774738 19 -   2996164 AGGGCACAGGCAGAATAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     528366 19 +    766320 AGGGCACAGGCAGAATAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28985207 19 -  71996105 AGGGCACAGGCAGAATAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     161361 19 +    290775 AGGGCACAGGCAGAATAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2619796 19 -   3067355 AGGGCACAGGCAGAATAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30059007 19 + 171630274 TGGGCACAGGCAGAATAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           207185 19 -    242197 CCGGCACAGGCAGAATAGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     200565 19 -   1771730 CGGGCACAGGCAGAATAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     274928 19 -    457564 CAGGCACAGGCAGAATAGG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     583603 19 +    730504 AGAGCGCAGGTGGAGCAGG
i proCoq1.NW_012152574v1   C 0 I 178
s otoGar3.GL873550            95497 19 +  18854210 AAAGCACAGGCAGAATAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57918174 17 -  94987271 AGGACACTGGAAG--TAGG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26216082  8 +  26524999 AGAGCAGG-----------
i canFam3.chr35            C 0 C 0
e micMur3.chr6                88410 1377 + 123392446 I
e dasNov3.JH582591            24636 614 +    102524 M

a score=1903789.000000
s hg38.chr6_GL000254v2_alt   872646 195 +   4827813 GTAGA---------GTAGTAGCCGGGACTGCAGTAAG-GATGGGCAGAACCCTA--AG-----GGAGAGTGGGCAGGG---AGCACGGGCAGGGAGCTCATGGTGGCACAG--GGAGGATG-----------CGAAAATGTGAGCAGGACGG-GGAGCGGCAGGAGGAGA----------GCAGTCTCCCCACCTTGAACAAT-TCCTCCCATCCACCCT--CTACTTCCACACCACCAGGG
s panTro5.chr6             29835316 195 + 175400573 GTAGG---------GTAGTAGCCGGGACTGCAGTAAG-GATGGGCAGAACCCTA--AG-----GGAGAGTGGGCAGGG---AGCACGGGCAGGGAGCTCACGGTGACACAG--GGAGGATG-----------GGAAAATGTGAGCAGGACGG-GGAGCGGCAGGGGGAGA----------GCAGTCTCCCCACCTTGAACAAT-TCCTCCCATCCACCCT--CTACTTCCACACCACCAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30070142 195 + 173848474 GTAGG---------GTAGTAGCCGGGACTGCAGTAAG-GATGGGCAGAACCCTA--AG-----GGAGAGTGGGCAGGG---AGCACGGGCAGGGAGCTCACGGTGACACAG--GGAGGATG-----------GGAAAATGTGAGCAGGACGG-GGAGCGGCAGGGGGAGA----------GCAGTCTCCCCACCTTGAACAAT-TCCTCCCATCCACCCT--CTACTTCCACACCACCAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5876422 195 +   6154872 GTAGG---------GTAGTAGCCGGGACTGCAGTAAG-GATGGGCAGAACCCTA--AG-----GGAGAGTGGGCAGGG---AGCACGGGCAGGGAGCTCATGGTGACACAG--GGAGGATG-----------GGAAAATGTGAGCAGGACGG-GGAGCGGCAGGAGGAGA----------GCAGTCTCCCCATCTTGAACAAT-TCCTCCCATCCACCCT--CTACTTCCACACCACCAGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74585270 181 + 122973662 GTAGG---------GTAGTAGCCGGGACTGCAGTAGG-GATAGGCAGAACCCTA--AA-----GGAGTGTGGGCAGGG---AGCAC--------------TGGTGACACAG--GGAGGGTG-----------GGAAAATGTGAACAGGATGG-AGAGCGGCACGGGGAGG----------GCAGTCTCCCCACCTTGAACAAT-TCCTCCCATCCACCCT--CTATTTCCACACCACCAGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30066494 182 + 172585720 GTAGG---------CTAGTAGCAGGGACTTCAGTAAG-GATGGGCAGAACCCTA--AG-----GGAGTGTGGGCAGGG---AGCAC-------------ATGGTGACACAG--GGAGGATG-----------GGAAAATGTTAACAGGACAG-GGAGCGGCAGGGAGAGG----------GCAGTCTCCCCACCTTGAACAGT-TCCTCCCATCCACCTT--CTACTTCCACACCACCAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29729338 182 - 170955103 GTAGG---------CTAGTAGCAGGGACTTCAGTAAG-GATGGGCAGAACCCTA--AG-----GGAGTGTGGGCAGGG---AGCAC-------------ATGGTGACACAG--GGAGGATG-----------GGAAAATGTTAACAGGACAG-GGAGCGGCAGGGAGAGG----------GCAGTCTCCCCACCTTGAACAGT-TCCTCCCATCCACCTT--CTACTTCCACACCACCAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2774757 182 -   2996164 GTAGG---------CTAGTAGCAGGGACTTCAGTAAG-GATGGGCAGAACCCTA--AG-----GGAGTGTGGGCAGGG---AGCAC-------------ATGGTGACACAG--GGAGGATG-----------GGAAAATGTTAACAGGACAG-GGAGCGGCAGGGAGAGG----------GCAGTCTCCCCACCTTGAACAGT-TCCTCCCATCCACCCT--CTACTTCCACACCACCAAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     528385 182 +    766320 GTAGG---------CTAGTAGCAGGGACTTCAGTAAG-GATGGGCAGAACCCTA--AG-----GGAGTGTGGGCAGGG---AGCAC-------------ATGGTGACACAG--GGAGGATG-----------GGAAAATGTTAACAGGACGG-GGAGCGGCAGGGAGAGG----------GCAGTCTCCCCACCTTGAACAGT-TCCTCCCATCCACCCT--CTACTTCCACACCACCAAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28985226 182 -  71996105 GTAGG---------CTAGTAGCAGGGACTTCAGTAAG-GATGGGCAGAACCCTA--AG-----GGAGTGTGGGCAGGA---AGCAC-------------ATGGTGACACAG--GGAGGATG-----------GGAAAATGTTAACAGGACAG-GGAGCGGCAGGGAGAGG----------GCAGTCTCCCCACCTTGAACAGT-TTCTCCCATCCACCCT--CTACTTCCACACCACCAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     161380 182 +    290775 GTAGG---------CTAGTAGCAGGGACTTCAGTAAG-GATGGGCAGAACCCTA--AG-----GGAGTGTGGGCAGGG---AGCAC-------------ATGGTGACACAG--GGAGGATG-----------GGAAAATGTTAACAGGACGG-GGAGCGGCAGGGAGAGG----------GCAGTCTCCCCACCTTGAACAGT-TCCTCCCATCCACCCT--CTACTTCCACACCACCAAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2619815 182 -   3067355 GTAGG---------GTAGTAGCAGGGACTGCAGTAAG-GATGGGCAGAACCCTA--AG-----GGAGTGTGGGCAGGG---AGCAC-------------ATGGTAACACAG--GGAGGATG-----------GGAAAATGTTAACAGGATGG-GGAGTGGCAGGGAGAGG----------GCAGTCTCCCCACCTTGAACAGT-TCCTCCCATCCACCCT--CTACTTCCACACCACCAAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30059026 182 + 171630274 GTAGG---------GTAGTAGCCAGGACTGAAGTAAA-GATGGGCAGAACCTTA--AG-----GAAGTGTGGGCAGGG---AGCAC-------------ATCATGACACAG--GGCGGATG-----------GGGAAATGTGAATAGGATGG-GGAGCAGCAGGGGGAGG----------GCAGCCTCCCCACCTTGAACAAT-TCCTCTCATCCACCTT--CTACTTCCACACTACCAGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           207204 182 -    242197 GTAGG---------GTAGTAGCCAGGACTGAAGTAAG-GATGGGCAGAACCCTA--AG-----GGAGTGTGGGCAGGG---AGCAC-------------ATGATGACATTG--GGAGGATG-----------GGGAAATGTGAATAGGACGG-GGAAAAGCAGGAGGAGG----------GCAGCCTCCCCACCTTGAACAAT-TCCTCTCATCCACCCT--CTACTTCCACACTACCAGGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     200584 185 -   1771730 GTAGG---------GTAGTAGCCAGGACTGAAGTAAG-GATGGGCAGAACCCTA--AG-----GGAGCGTGGACAGGGAGCAGCAC-------------ATGATGACACAG--GGAGGATG-----------GGGAAATGTGAATAGGACGG-GGAGCAGCAGGGGGAGG----------GCAGCCTCCCCACCTTGAACAAT-TCCTCTCATCCACCCT--CTACTTTCACACTACCAGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     274947 182 -    457564 GTAGG---------GTAGTAGCCAGGACTGAAGTAAA-GATGGGCAGAACCCTA--AG-----GGAGTGTGGGCAGGG---AGCAC-------------ATGATGACACAG--GGAGGATG-----------GGGAAATGTGAATAGGACGG-GGAGCAGCAGCAGGAGG----------GCAGCCTCTCCATCGTGAACAAT-TCCTCTCATCCACCCT--CTACTTCTACACTACCAGGG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            95516 187 +  18854210 -TAGG---------GCAGTGGGTGGAACT-------G-AATGGGCAGAGATCTAGGAG-----GGAGTGTGGGCAGGG---GGCAG----------------GTGACAAAGCAGCAGGATGCAGCCAATGGAGGGTAAAGTGAGTGGGGGGGAGGAAGTTCAGGGAAGAC----------ATGATCTCCCCACCTTCAATAGT-TCTTCCTATCCATCCT--CTACTTCTATAACACCAGGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57918191 220 -  94987271 -TTGGACTGAGGCCATGGTGGATGGAACTGCAGGATGCAATGGGAATAATGATC--AGATGACAAAAAGCAAGCAGGATATAGCAAGCGGAGAATggagaggaggggaggg--gaggggag-----------gggagggaagaggagggagg-agagcggaagagaggggagCAAGGGAAGGGGTCT----GCATTCACCCAT-TCCTCCCATCTATCTCTACTACTGCTACAGCACCAGGG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26216090 140 +  26524999 GCAGG---------ACAGTGG-------------GGG-GAGGGGCAGG--CCTT--CG-----GGAG---GGACAGAG----GTAC-------------------AGCCAG--TGGGGATG-----------G-------------GGGCAC-GGAGAGGCCAGCAAGGG----------G--GTCCCTCTGCCTCAGGCAATGTGCTCCCATCCATTTC--CT-CCTCTGC-TGGCCAGG-
i canFam3.chr35            C 0 C 0
e micMur3.chr6                88410 1377 + 123392446 I
e dasNov3.JH582591            24636 614 +    102524 M
e proCoq1.NW_012152574v1     583622 178 +    730504 I

a score=4733339.000000
s hg38.chr6_GL000254v2_alt   872841 407 +   4827813 TGATCTTGCTAAAACCTCCTGGCTTTAGTGGCCAAAAACCTCCAACCACTCCCCAATATCTATAAGTTATAGCCTGAACACTTCTGGATATG-ACACAGACCcttcacaacatgctcccatccacctgtccagctaggctcat-ctcccagccccacacctaccccacgct----ccagccatgctgaactactcact------ttctcttcat---ctactctc-tttcatgtattttctagccacacga-tgctccctatgcccctgaagtagccttcctctatttctctagctgataaaatcctatttgtccttcagtattcaaatgccacctcttcagtgaggtccacccaatcacgccagcagtgaactgtgttcccttctttgcccccaaagcactttgtgcagatccctactctgga
s panTro5.chr6             29835511 407 + 175400573 TGATCTTGCTAAAACCTCCTGGCTTTAGTGGTCAAAAACCTCCAACCACTCCCCAGTATCTGTAAGTTATAGCCTGAACACTTCTGGATATG-ACACAGACCcttcacaacatgctcccatccacctgtccagctaggctcat-ctcccagccccacacctaccccacgct----ccagccatgctgaactactcact------ttctcttcat---ctactctc-tttcatgtattttctagccacacga-tgctccctatgcccctgaagtagccttcctctatttctctagctgataaaatcctatttgtccttcagtattcaaatgccacctcttcagtgaggtccacccaatcacgccagcagtgagctgtgttcctttctttgcccccaaagcactttgtgcagatccctactctgga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30070337 407 + 173848474 TGATCTTGCTAAAACCTCCTGGCTTTAGTGGTCAAAAACCTCCAACCACTCCCCAGTATCTATAAGTTATAGCCTGAACACTTCTGGATATG-ACACAGACCcttcacaacatgctcccatccacctgtccagctaggctcat-ctcccagccccacacctaccccacgct----ccagccatgctgaactactcact------ttctcttcat---ctactctc-tttcatgtattttctagccacacga-tgctccctatgcccctgaagtagccttcctctatttctctagctgataaaatcctatttgtccttcagtattcaaatgccacctcttcagtgaggtccacccaatcacgccagcagtaagctgtgttcctttctttgcccccaaagcactttgtgcagatccctactctgga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5876617 407 +   6154872 TGATCTTGCTAAAACCTCCTGGCTTTAGTGGCCAAAAACCTCCAACCACTCCCCAGTATCTATAAGTTATAGCCTGAACACTTCTGGATATG-ACACAGACCcttcacaacatgctcccatccacctgtccagctaggctcat-ctcccagccccacacctaccccacgct----ccagccatgctgaactactcact------ttctcttcat---ctactctc-tttcatgtattttctaggcacacga-tgctccctatgcccctgaagtagccttcctctatttctctagctgataaaatcctatttgtccttcagtattcaaatgccacctcttcagtgaggtccacccaatcacgccagcagtgaactgtgttcccttctttgcccccaaagcactttgtgcagatccctactctgga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74585451 407 + 122973662 TGATCTTGCTAAAACCTCCTGGCTTTAGTGGACAAAAACCTCCAACCACTCCCCAGTATCTATAAGTTATAGCCTGAACACTTCTGGATGTG-ACACAGACCcttcacaacatgctcccacccacctgtccagctaggctcat-ctcccagccccacacctaccccacgct----ccagccatgctgaactactcact------ttctcttcat---ctactctc-tttcatgtattttctagccacacga-tgctccctatgcctctgaagtggccttcctctatttctctagctgataaaatcctatttgttcttcagtattcaaatgccacctcttcagtgaggtccacccaatcacgctagcagtgagctgtgttcccttctttgcccccaaagcactttgtgcagatccctactctgga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30066676 406 + 172585720 TGATCTTGCTAAAACCTCCTGGCTTTAGTGGCCAAAAACCTCCAACCACTCCCCAGTATCTATAAGTTACAGCCTGAACACTTCTGGATGTG-ACACAGACCcttcacaacatgctcccaccaacctgtccagctaggctcat-ctcccagccctgcatctaccccacgct----ccagccatgctgaactacccact------ttctcttcat---ctactctc-tttcaagtattttctagccacacaa-tgctccctatgcccccgaagtagccttcccctatttctctagctgataaaatcctatttgtccttcagtattcaaatg-cacctcctcacggaggtccacccaatcacaccaacagtgagctgcattcccttctttgcccccaaagcactctgtgcagatctctactctgga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29729520 406 - 170955103 TGATCTTGCTAAAACCTCCTGGCTTTAGTGGCCAAAAACCTCCAACCACTCCCCAGTATCTATAAGTTACAGCCTGAACACTTCTGGATGTG-ACACAGACCcttcacaacatgctcccaccaacctgtccagctaggctcat-ctcccagccctgcatctaccccacgct----ccagccatgctgaactacccact------ttctcttcat---ctactctc-tttcaagtattttctagccacacaa-tgctccctatgcccctgaagtagccttcccctatttctctagctgataaaatcctatttgtccttcagtattcaaatg-cacctcctcacggaggtccacccaatcacaccaacagtgagctgcattcccttctttgcccccaaagcactctgtgcagatctctactctgga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2774939 406 -   2996164 TGATCTTGCTAAAACCTCCTGGCTTTAGTGGCCAAAAACCTCCAACCACTCCCCAGTATCTATAAGTTACAGCCTGAACACTTCTGGATGTG-ACACAGACCcttcacaacatgctcccaccaacctgtccagctaggctcat-ctcccagccctgcatctaccccacgct----ccagccatgctgaactacccact------ttctcttcat---ctactctc-tttcaagtattttctagccacacaa-tgctccctatgcccctgaagtagccttcccctatttctctagctgataaaatcctatttgtccttcagtattcaaatg-cacctcctcacggaggtccacccaatcacaccaacagtgagctgcattcccttctttgcccccaaagcactctgtgcagatctctactctgga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     528567 406 +    766320 TGATCTTGCTAAAACCTCCTGGCTTTAGTGGCCAAAAACCTCCAACCACTCCCCAGTATCTATAAGTTACAGCCTGAACACTTCTGGATGTG-ACACAGCCCcttcacaacatgctcccacccacctgtccagctaggttcat-ctcccagccctgcatctaccccacgct----ccagccatgctgaactacccact------ttctcttcat---ctactctc-tttcaaatattttctagccacacaa-tgctccctatgcccctgaagtagccttcccctatttctctagctgataaaatcctatttgtccttcagtattcaaatg-cacctcctcacggaggtccacccaatcacaccaacagtgagctgcattcccttctttgcccccaaagcactctgtgcagatctctactctgga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28985408 406 -  71996105 TGATCTTGCTAAAACCTCCTGGCTTTAGTGGCCAAAAACCTCCAACCACTCCCCAGTATCTATAAGTTACAGCCTGAACACTTCTGGATGTG-ACACAGACCcttcacaacatgctcccacccacctgtccagctaggctcat-ctcccagccctgcatctaccccacgct----ccagccatgctgaactacccact------ttctcttcat---ctactctc-tttcaagtattttctagccacacaa-tgctccctatgcccctgaagtagccttcccctatttctctagctgataaaatcctatttgtccttcagtattcaaatg-cacctcctcacggaggtccacccaatcacaccaacagtgagctgcattcccttctttgcccccaaagcactctgtgcagatctctactctgga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     161562 406 +    290775 TGATCTTGCTAAAACCTCCTGGCTTTAGTGGCCAAAAACCTCCAACCACTCCCCAGTATCTATAAGTTACAGCCTGAACACTTCTGGATGTG-ACACAGAACcttcacaacatgctcccacccacctgtccagctaggctcat-ctcccagccctgcatctaccccacgct----ccagccatgctgaactacccact------ttctcttcat---ctactctc-tttcaagtattttctagccacacaa-tgctccctatgcccctgaagtagccttcccctatttctctagctgataaaatcctatttgtccttcagtattcaaatg-cacctcctcacggaggtccacccaatcacaccaacagtgagctgcattcccttctttgcccccaaagcactctgtgcagatctctactctgga
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2619997 406 -   3067355 TGATCTTGCTAAAACCTCCTGGCTTTAGTGGCCAAAATCCTCCACCCACTCCCCAGTATCTATAAGTTACAGCCTGAACACTTCTGGATGTG-ACACAGACCcttcacaacatgctcccacccacctgtccagctaggctcat-ctcccagccctgcatctaccccacgct----ccagccatgctgaactacccact------ttctcttcat---ctactctc-ttttaagtattttctagccacacga-tgctccctacgcccctgaagtagccttcctttatttctctagctgataaaatcctatttgtccttcagtattcaaatg-cacctcttcacggaggtccacccaattatgccaacagtgagctgcattcccttctttgccgccaaagcactctgtgcagatctctactctgga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30059208 402 + 171630274 TGATCTTGCT--AACATCCTGGCTTTACTGGATAAAAACCGCATACCACTCCCTAGTATTTATAAGTTACAGCCTGAACACCTCTGGATGTG-ATACAGACActtcacaacatgctcccacccacctg----gccaggctcat-ctcccagccccgcacccaccccactct----ccagccatgcttaactactcact------ttctcttgat---ctactcttttttcctgtattttctagccacatga-tgcttcctatggccccggagtagccttcctctatttctctagctgataaaatcctatttgtccttcagtattcaaaggccacctctacggtgaggtccaaccaatcacgtcaaccgttagctgtgctcccttctttgaccccaaaatactttgtgcagatccctactctgga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           207386 402 -    242197 TGATCTTGCT--AACATCCTGGCTTTACTGGACAAAAACCCCCTACCACTCCTGAGTATTTATAAGTTACAGCCTGAACACCTCTGGATGTG-CTACAGACCcttcacaacatgctctcacccacctg----gccagactcat-ctcccagccccgcatccaccccactct----ccagccatgctgaactactcact------ttctcttgat---ctactctcttttcatgtattttctagccacatga-tgcttcctatgcccccggagtagccttcctctatttctctagctgataaaatcctatttgtccttcagtattcaaaggccacctctacagtgcagtccacccaatcatgccaaccgttagctgtgttcccttctttgcccccaaagtactttgtgcagatccctactatgga
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     200769 399 -   1771730 TGATCTTGCT--AACATCCTGGCTTTACTGGACAAAAACCC---ACCACTCCTGAGTATTTATAAGTTACAGCCTGAACATCTCTGGATGTG-ATACAGACCcttcacaacatgctcccacccacctg----gccaggctcat-ctcccagccgcacatctaccccactct----ccagccatgctgaactactcact------ttctcttgat---ctactctcttttcatgtattttctagccgcatga-tgcttcctatgcccccggagtaggcttcctctatttctctagctgacaaaatcctatttgtccttcagtattcaaaggccacctctacagtgaggtccacccaatcacgccaaccgttagctgtgttcccttctttgccctcaaagtactttgtgcagatccctactctgga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     275129 400 -    457564 TGATCTTGCT--AACATCCTGGCTTTACTGGACAAAAACCCCCTACCACTCCCAAGTATTTATAAGTTACAGCCTGAACACCTCTGGACGTG-ATACAGGCCCTTCAAAACATgctcccacccacctg----gccaggctcat-gtcacagccccgcatccaccc--ctct----ccagacatgctgaactactcact------ttctcttgat---ctactctcttttcatgtattttctagccacatga-tgcttcctatgcccccggagtagccttcctctatttctctagctgataaaatcctatttgcccttcagtattcaaaggccacctctacagtgaggtccacccaatcacaccaaccattagctgtgttcccttctttgtccccaaagtactttgggcagatccctactctgga
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     583800 400 +    730504 TGATCTTGCTAAAATCGCCTGGATTTAG-GGCCAAAAACCTCTGATCACTCCCCAGTACCTATGGGTTACAGCCTGAAGTCCTCCGGGTGTG-ACACAGACcc-tcacaatgcggccccacacacctg----cccaggctcat-ctcccaggcccgcacccaccccacgct----ccagccgtgctgaactacccact------ttctcct-gt---ctactctc-tttcatgtctttgctagctacgtga-tgctccccatgtccctggagcaaccttcctctatttctccagctgacaaaaccccatgcatccttcgacattcaaatgccacctcttctgtgtggtcaacccaaccatgccaactgcgagctgcggtcccttctttgctcccacagcccttCATGCAGATCCCTACGCCGCA
i proCoq1.NW_012152574v1   I 178 I 49
s otoGar3.GL873550            95703 342 +  18854210 TGAACTTGCTAAAATTGCCTGGTTTCAGTGGCCAAAAACCTCTGATCACTCCCCAGTGCCTATGAGT-------CGAACACCTCT-GGTGTG-ACAC--ACCC-TTACAGTATGTCCCAGC-CATCTG----GCCAGGCTCAT-CTCCCCAACCCTCATTCACCCCACACT----GCAGCCACACTGAACTATTCACT------TTCTCT-----------------------------CTAGTTCCGTGATTTCTCCCCATACTCCTGGAGTAGTCTTCCTCTATTTCT--------------CCCATGCATCCTTCAACATTCAGATGCTACCTCTTCTGTGAGGTCTGTCCAACCAT-----------GCTGTGTTCCCTTCTTTGCTCCTACAGCACTTTGTGCAGACCCCTACTCAGGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57918411 270 -  94987271 TATTCTTGCTAAACCCTACTGATCTAA------------------------TCTAGCACCTGC-AGTTACCACCTGCACACCTTTGAATGTG-ACACAG-----------CATGTCCCA--------------------TCAC-CTCCCAGGCCTTCACCGACCCTGTGCTCCACCCAGCTATGCTGAACTACTTACT------CAGTCTCCCTTTCCTACCCTC-TTTCA------------------GA-T----------CTCCTGCA-----------------------------------------TCCTTCAATGCACAAAAGCTACCTCCTTCCTGAGACCCACTCAAACATG--GACAGTGAGCCAC-TTCCCTTCTGTGT--CCACAGTACTTTCTACAG--------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26216230 325 +  26524999 CGACCAGGAAAAAATCTGCTGGGGTTACCAGCCCAA-----CCCTCTGCCCTTCAGTGTGT-------------------------GGTGTGTCCACAGACCCTTACCAACACAGCCCTGCCCATCTT----------CCCATGCTCCTTGGCCCTTTCCTCCCCCATGC-----CTGGCCATACCCGGCCA--CACTGAGGGGCTCCCCTGAT---CTGCTGGC----------TTTTCCATCCCTGCAA-----------GCCGCCGGAGTGACCATCCT-TATTTCTCCAGCTGGCAAAG-CCCATGTATCCTTTGATACTGAAATGCCACCCTT---GTGAGGTCCAGCC-ACCTCCCCAGCCAC----------CACTTCTTCGCTTGCACAGCACTTTCTGTGGAC------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6                88410 1377 + 123392446 I
e dasNov3.JH582591            24636 614 +    102524 M

a score=885580.000000
s hg38.chr6_GL000254v2_alt   873248 72 +   4827813 acctctcctattgcactacagctaattgtctgcttctccagctgcactctggcctcactgggaacagagGAT
s panTro5.chr6             29835918 72 + 175400573 acctctcctattgcactacagctaattgtctgcttctccagctgcactctggcctcactgggaacagagGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30070744 72 + 173848474 acctctcctattgcactacagctaattgtctgcttctccagctgcactctggcctcactgggaacagagGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5877024 72 +   6154872 acctctcctattgcactacagctaattgtctgcttctccagctgcactctggcctcactgggaacagagGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74585858 72 + 122973662 acctctcctattgcactacagctaattgtctgcttctccagctgcactctggcctcactgggaacagagGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30067082 72 + 172585720 acctctcctactgcactgcagctaattgtctgcttctccagctgcactctggcctcactgggaacagagGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29729926 72 - 170955103 acctctcctactgcactgcagctaattgtctgcttCTCCAGCTGCACTCTGGCCTCACTGGGAACAGAGGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2775345 72 -   2996164 acctctcctactgcactgcagctaattgtctgcttctccagctgcactctggcctcactgggaacagagGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     528973 72 +    766320 acctctcctactgcactgcagctaattgtctgcttctccagctgcactctggcctcactgggaacagagGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28985814 72 -  71996105 acctctcctactgcactgcagctaattgtctgcttCTCCAGCTGCACTCTGGCCTCACTGGGAACAGAGGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     161968 72 +    290775 acctctcctactgcactgcagctaattgtctgcttctccagctgcactctggcctcactgggaacagagGAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2620403 72 -   3067355 acctctcctactgcactgcagctaattgtctgcttctccagctgcactctggcctcactgggaacagagGAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30059610 72 + 171630274 acctctcctactgcactgcagctaattggctgcctctccagctgcactctggcctcactgggaacagACGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           207788 72 -    242197 gcctcttctactgcactgcagctaattatctgcctctccagctgcactctggcctcactgggagcagagGAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     201168 72 -   1771730 acctctcctactgcactgcagctaattgtctgcctctccagctgcactctggcctcactgggaacagagGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     275529 72 -    457564 acctctcctactgcactgcagctaattgtctgcctctccagctgcactctggcctcactgggaacagagGAT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            96045 55 +  18854210 GCCTCTTATAGTGCACTACAGCTAATTGTTGGCTTCTCCGCCTCCCCCC-----------------GATAAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57918681 62 -  94987271 ----------TCACACTGCAGCCAGTTGTCTCTCTCTCCTGCTACATGCCGATCCCACTAGGAACAGACACT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26216555 70 +  26524999 ATTTCTCATACTG-GCCATGGCTCACTGTGTGCCCCTCCTATGGCGCTTCCATCTCACAGGGACCTACGGC-
i canFam3.chr35            C 0 C 0
e micMur3.chr6                88410 1377 + 123392446 I
e dasNov3.JH582591            24636 614 +    102524 M
e proCoq1.NW_012152574v1     584200 49 +    730504 I

a score=446775.000000
s hg38.chr6_GL000254v2_alt   873320 39 +   4827813 TCCTGATGAACtgcatg----tgcatgtgcatggaaatgccat
s panTro5.chr6             29835990 39 + 175400573 TCCTGATGAACtgcatg----tgcatgtgcatggaaatgccat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30070816 39 + 173848474 TCCTGATGAACtgcatg----tgcatgtgcatggaaatgccat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5877096 43 +   6154872 TCCTGATGAACtgcatgtgcatgcatgtgcatggaaatgccat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74585930 39 + 122973662 TCCTGATGAACtgcatg----tgcatgtgcatggaaatgccat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30067154 39 + 172585720 TCCTGATGAACtgcatg----tgcatgtgcatggaaatgccat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29729998 39 - 170955103 TCCTGATGAACtgcatg----tgcatgtgcatggaaatgccat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2775417 39 -   2996164 TCCTGATGAACtgcatg----tgcatgtgcatggaaatgccat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     529045 39 +    766320 TCCTGATGAACtgcatg----tgcatgtgcatggaaatgccat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28985886 39 -  71996105 TCCTGATGAACtgcatg----tgcatgtgcatgaaaatgccat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     162040 39 +    290775 TCCTGATGAACtgcatg----tgcatgtgcatggaaatgccat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2620475 39 -   3067355 TCCTGATGAATtgcatg----tgcatgtgcatggaaatgccat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30059682 29 + 171630274 TCCTGATGAACTGCATG----TGC----------AAATGCCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           207860 29 -    242197 TCCTGATGAACTGCATG----TGC----------AAATGCCAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     201240 29 -   1771730 TCCTGATGAACTGCATG----TGC----------AAATGCCAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     275601 28 -    457564 TCCTGAT-AACTGCATG----TGC----------AAATGTCAT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     584249 39 +    730504 TCCTGATGAACTGCATG----TGCACATGCGTGCAAATGCCAT
i proCoq1.NW_012152574v1   I 49 I 25
s otoGar3.GL873550            96100 39 +  18854210 TCCTGATGAACTGCATG----TGTATGTGTGTGCAAATGCCAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57918743 26 -  94987271 TCCTGAAGATGTGAACG----CACATATGT-------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26216625 37 +  26524999 CCGTGCTGGA--GTATG----CATGTGTGTGTGCAAATGCCAT
i canFam3.chr35            C 0 C 0
e micMur3.chr6                88410 1377 + 123392446 I
e dasNov3.JH582591            24636 614 +    102524 M

a score=160651.000000
s hg38.chr6_GL000254v2_alt   873359 12 +   4827813 gtgcaCAGATGT
s panTro5.chr6             29836029 12 + 175400573 gtgcaCAGATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30070855 12 + 173848474 gtgcaCAGATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5877139 12 +   6154872 gtgcaCAGATGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74585969 12 + 122973662 gtgcaCAGATGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30067193 12 + 172585720 gtgcaCAGATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29730037 12 - 170955103 gtgcaCAGATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2775456 12 -   2996164 gtgcaCAGATGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     529084 12 +    766320 gtgcaCAGATGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28985925 12 -  71996105 gtgcaCAGATGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     162079 12 +    290775 gtgcaCAGATGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2620514 12 -   3067355 gtgcaCAGATGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30059711 12 + 171630274 GTGCACAGATGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           207889 12 -    242197 GTGCACAGATGT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     201269 12 -   1771730 GTGCATAGATAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     275629 12 -    457564 GTGCACAGATGT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            96139 12 +  18854210 ATGCATAGATGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57918769 11 -  94987271 GTGCACAG-TGC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26216662 11 +  26524999 GTGCACAGCTG-
i canFam3.chr35            C 0 C 0
e micMur3.chr6                88410 1377 + 123392446 I
e dasNov3.JH582591            24636 614 +    102524 M
e proCoq1.NW_012152574v1     584288 25 +    730504 I

a score=3089415.000000
s hg38.chr6_GL000254v2_alt   873371 270 +   4827813 ATgatcaggacagcacagagcagaggaaaaagagagagcaaggacaggcaggcagatcagGAG--AAAGAGTGGGTGTTT-CCACCAGTGGAAAAGAGAACCACTCAACTATCA----CTGTTGAAGCTGGCCTCTCCCCAC--AGCACTAGAACCTTCCATGTACCAACAGTCCCAGAGCCCCTCCTCCCTGTGTGGCAGTGGT-CCCTTCCCCCCAA--CTCTCTGCTG--TGTTTCCATCTCTGCTTCTATCCTTCCAAAC-C-CA-ACAAAGGCTCCCAAAAA
s panTro5.chr6             29836041 270 + 175400573 ATgatcaggacagcacagagcagaggaaaaagagagagcaaggacaggcaggcagatcagGAG--AAAGAGTGGGTGTTT-CCACCAGTGGAAAAGAGAACCACTCAACTATCA----CTGTTGAAGTTGGCCTCTCCCCAC--AGCGCTAGAACCTTCCATGTACCAACAGTCCCAGAGCCCCTCCTCCCTGTGTGGCAGTGGT-CCCTTCCCCCCAA--CTCTCTGCTG--TGTTTCCATCTCTGCTTCTATCCTTCCAAAC-C-CA-ACAAAGGCTCCCAAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30070867 270 + 173848474 ATgatcaggacagcacagagcagaggaaaaagagagagcaaggacaggcaggcagatcagGAG--AAAGAGTGGGTGTTT-CCACCAGTGGAAAAGAGAACCACTCAACTATCA----CTGTTGAAGCTGGCCTCTCCCCAC--AGCGCTAGAACCTTCCATGTACCAACAGTCCCAGAGCCCCTCCTCCCTGTGTGGCAGTGGT-CCCTTCCCCCCAA--CTCTCTGCTG--TGTTTCCATCTCTGCTTCTATCCTTCCAAAC-C-CA-ACAAAGGCTCCCAAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5877151 269 +   6154872 ATgatcaggacagcacagagcagaggaaaaagagagagcaaggacaggcaggcagatcagGAG--AAAGAGTGGGTGTTT-CCACCAGTGGAAAAGAGAACCACTCAACTATCA----CTGTTGAAGCTGGCCTCTCCCCAC--AGCACTAGAACCTTCCATGTACCAACAGTCCCAGAGCCCCTCCTCCCTGTGTGGCAGTGGT-CCCTTCCCCCCAA--CTCTCTGCTG--TGTTTCCATCTCTGCTTCTATCCTTCGAAAC-C-CA-ACAAAGGCT-CCAAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74585981 265 + 122973662 ATGAT-----CAGCACAGAGCAGAGGAAACAGAGAGAGCAACGACAGGCAGGCAGATTAGGAG--AAAGAGTGGGTGTTT-CTACCAGTGGAACAGAGAACCACTCGACTACCA----CTGTTGAAGCTGGCCTCTCCCCAC--GGCACTAGAACCTTCCATGTACCAACAGTCCCAGAGCCCCTCCTCCCTGTGTGGCAGTGGT-CCCTTCCCCCCAA--CTCTCTGCTG--TGTTTCGATCTCTGCTTCTATGCTTCCAAAC-C-CA-ACAAAGGCTCCCAAGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30067205 275 + 172585720 ATgatcaggacagcacagagcagaggaaaaagagagagcaaggacaggcaggcagatcagGAG-AAAAGAGTGGGTGTTT-CCACCAGTGCAAAAGAGAACCAATCAACTACCA----CTGTTGAAGCTGGCCTCTCCCCAC--AGCACTAGAACCTTCCATGTACCAATAGTCCCAGAGCCCCTCCTCCCTGTGTGGCAGTGGT-CCCTTCCCCCCAACTCTCTCTGCTGTCTGTTTTGATCTCTGCTTCCATCCTTCCAAAC-C-CA-ACAGAGGCTCCCAAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29730049 275 - 170955103 ATGATCAGGACAGCACAGAGCAGAGGAAAAAGAGAGAGCAAGGACAGGCAGGCAGATCAGGAG-AAAAGAGTGGGTGTTT-CCACCAGTGCAAAAGAGAACCAATCAACTACCA----CTGTTGAAGCTGGCCTCTCCCCAC--AGCACTAGAACCTTCCATGTACCAATAGTCCCAGAGCCCCTCCTCCCTGTGTGGCAGTGGT-CCCTTCCCCCCAACTCTCTCTGCTGTCTGTTTTGATCTCTGCTTCCATCCTTCCAAAC-C-CA-ACAGAGGCTCCCAAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2775468 275 -   2996164 ATGATCAGGACAGCACAGAGCAGAGGAAAAAGAGAGAGCAAGGACAGGCAGGCAGATCAGGAG-AAAAGAGTGGGTGTTT-CCACCAGTGCAAAAGAGAACCAATCAACTACCA----CTGTTGAAGCTGGCCTCTCCCCAC--AGCACTAGAACCTTCCATGTACCAATAGTCCCAGAGCCCCTCCTCCCTGTGTGGCAGTGGT-CCCTTCCCCCCAACTCTCTCTGCTGTCTGTTTTGATCTCTGCTTCCATCCTTCCAAAC-C-CA-ACAGAGGCTCCCAAGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     529096 275 +    766320 ATGAGCAGGACAGCACAGAGCAGAGGAAAAAGAGAGACCAAGGACAGGAAGGCAGATCAGGAG-AAAAGAGTGGGTGTTT-CCACCAGTGCAACAGAGAACCACTCAACTATCA----CTGTTGAAGCTGGCCTCTCCCCAC--AGCACTAGAACCTTCCATGTACCAACAGTCCCAGAGCCCCTCCTCCCTGTGTGGCAGTGGT-CCCTTCCCCCCAACTCTCTCTGCTGTCTGTTTTGATCTCTGCTTCCATCCTTCCAAAC-C-CA-ATAGAGGCTCCCAAGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28985937 276 -  71996105 ATGATCAGGACAGCACAGAGCAGAGGAAAAAGAGAGAGCAAGGACAGGCAGGCAGATCAGGAGAAAAAGAGTGGGTGCTT-CCACCAGTGCAACAGAGAACCACTCAACTATCA----CTGTTGAAGCTGGCCTCTCCCCAC--AGCACTAGAACCTTCCATGTACCAACAGTCCCAGAGCCCCTCCTCCCTGTGTGGCAGTGGT-CTCTTCCCTCCAACTCTCTCTGCTGTCTGTTTTGATCTCTGCTTCCATCCTTCCAAAC-C-CA-ACAGAGGCTCCCAAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     162091 275 +    290775 ATGATCAGGACAGCACAGAGCAGAGGAAAAAGAGAGACCAAGGACAGGAAGGCAGATCAGGAG-AAAAGAGTGGGTGTTT-CCACCAGTGCAACAGAGAACCACTCAACTATCA----CTGTTGAAGCTAGCCTCTCCCCAC--AGCACTAGAACCTTCCATGTACCAACAGTCCCAGAGCCCCTCCTCCCTGTGTGGCAGTGGT-CCCTTCCCCCCAACTCTCTCTGCTGTCTGTTTTGATCTCTGCTTCCATCCTTCCAAAC-C-CA-ATAGAGGCTCCCAAGGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2620526 274 -   3067355 ATGATCAGGACAGCACAGAGCAGAGGAAAAAGAGAGAGCAAGGAGAGGCAGGCAGATCAGGAG--AAAGAGTGGGTGTTT-CCACCACTGCAACAGAGAACCACTCAGCTATCA----CTGTTGAAGCTGGCTTCTCCCCAC--AGCGCTAGAACTTTCCATGTACCAACAGTCCCAGAGCCCCTCCTCCCTGTGTGGCAGTGGT-CCCTTCCCCCCAACTCTCTCTGCTGTCTGTTTTGATCTCTGCTTCCATCCTTCCAAAC-C-CA-ACAGAGGCTCCCAAGGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30059723 266 + 171630274 ATGATCAGGACAGCACAGAGCAGAGGAAAGAGAGAGAGCAAGGAC----AGGCAGATCAGGAG--GAAGAGTGGATGGTT-CCACCAGTGGAACAGAAAACCACCCAATTATCA----CTGTTGAAGCTGGCCTCTCCCCAT--AGCGCTACAACCTTCCATGT----AGAGTCCCAGAGACTCTCCTCCCTGTGTTGCAGTGGTCCCCTTCCCCCCAACTCTCTCTGTTGTCTGTTTCAATGTACGCCTCTACCCTTGCAAAC-C-CA-ACAGAGGCTCCT-TGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           207901 264 -    242197 ATGATCGGGACAGCACAGAGCAGAGGAAAGAGAGAGAGCAAGGAC----AGGCAGATCAGGAG--AAAGAGTGGATGGTT-CCACCAGTGGAACAGAAAACCACTCAGTTATCA----CTGTTGAAGCTGG-CTCTCCCCAT--AGTGCTACAACCTTCCATGT----AGAGTCCCAGAGACTCTCCTCCCTATGTTGCAGGGGT-CCCTTCCCCCCAACTCTCTCTGCTGTCTGTTTCAATGTATGCCTCCATCCTTCCAAAC-C-CA-ACAGAGGCTCCC-TGGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     201281 264 -   1771730 ATGATcaggacagcacagagcagaggaaagagagagggcaaggac----aggcagatcaggaG--GAAGAGTGGATGGTT-CCACCAGTGGAACAGAAAACCACTGAATTATCA----CTGTTGAAGCTGGCCTCTCCCCAT--AGCGCTACAACCTTCCATGT----AGAGTCCCAGAGACTCTCCT-CCTGTGTTGCAGTGGT-CCCTTCCCCCCAACTCTCTCTGCTGCCTGTTTCAATGTATGCCTCCATCCTTCCAAAC-C-CA-ACAGAGGCTCCC-TAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     275641 263 -    457564 ATGATCAGGACAGCACAGAATAGAGGAAAGAGAGA--GCAAGGAC----AGGCAGATCAGGAG--GAAGAGTGGATGGTT-CCACCAGTGGAACAGAAAACCACTCAATTATCA----CTGTTGAAGCTGGCCTCTCCCCAT--AGCGCTACAACCTTTCATGT----AGAGTCCCAGAGACTCTCCTCCCTGTGTTGCAGTGGT-CCCTTCCCCCCAACTCTCTCTGCAGTCTGTTTCAATGTATGCCTCCATCCTTCCAAGC-C-CA-ACAGAGGCTCCC-TGGG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     584313 268 +    730504 ATGATCGGGACAGCACAGGGCAGAGGAA----AGAGAGTAAGGATGGGCAG---AATCGGGGA--AAAGAGTGGATGTTTCCCACCAGCATAATAGAGAACCACTCAAATATCA----CTGCTGAAGCCGGCCTGTCCCCGC--AGCCCCAGAACCCTCCGTGTACCAAGAGTCTCAGAGGCCCCCCTCCCTGTGTGGCAGTGGT-CCCTCCCC-CCAGTTCACTCTGCTGCCTGCTTAGATCTCTGCCTCCATCCTTCCAAAC-C-CCCACTGAGGCTGCCGTGGG
i proCoq1.NW_012152574v1   I 25 C 0
s otoGar3.GL873550            96151 273 +  18854210 ATAATCAGGACAGCACAGGGCAGAGGAAAGAGAGAGAGTAAGGATGGGCAG---AATCAGGAA--AAGAGGAGGACATTTCCCATTAGCTTAATAAAGAACCTCTCAAATATCA----CTGCTGAAGCCAGCTTTTCCCCCCAGAGCCCCAGAACTTTCCATGTACCAAGAGCCTTGGAGGCCCTCCTCCCTGTGTGGCAGT-GT-CCCTTCCC-CCAGTTCACTCTACTGCCTGTTTAGATCTCTGCCTTCATCCTTCCAAAC-C-CACACTGAGGCTCCCATGGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57918780 245 -  94987271 ATGGTCAGGACAG----AAACACAGTGAAGAGAGGGAGCCAGT------GGGAAGAACCAGGA--AAAGGATGGATGCTT-C-----ATATAGGAGAGAAACATTCAAACATCA-------TTGAAGCCAGCTTTTCCTCAT--AGTACCAGAAAC-TCCATAAGCC--CAGTCCCAGAGGC-CTCCTCCCTCTGAGATGCTATG-TCCCTTACCCAAA--CTCTATG-----TGCTTGGAT-TCTGCCTTCAACATTTTAAACTC-CA-ACCAAGGATCCCACGGG
i mm10.chr17               C 0 I 1
s canFam3.chr35            26216673 174 +  26524999 --------------------CAGGGAAGGAGGAGGGGGGATGGGCAGGAGGGGGGATGTAGTT-----------CTGTCC-CCACCAG----------AACTACACAAATGTGACTAGCTATGGAAGCCAGCCTTTCC------AGC-----------------------AGCCCCAG-------------------------GA----------CCAG--CTCCCTGCTGTCTGGTCCAA-CTCCACCTC--TCCTTGCAAAC-CACA-GCAAAGGCCCCCTGGCG
i canFam3.chr35            C 0 C 0
e micMur3.chr6                88410 1377 + 123392446 I
e dasNov3.JH582591            24636 614 +    102524 M

a score=3591254.000000
s hg38.chr6_GL000254v2_alt   873641 255 +   4827813 AAGTCCACAGTTCTGATTCTCAGCCCCCATACCACAGACAAG-CCACCATTGTTCAGGAGACCTTTGAGCAGATCCCCTTCCTTTGCCTTCAATGGCTCCCTCCTCTTCTCTGCAAGGCCTGCCATGGCAACCTTGGAACTGACAAGTAAACTACAGAATG-AAAATGGCCTGCAGACACAGAAAGA------------AGGGACAGAGCCAAACAGAGAAC-AGAGGGGTGATGCTAGAAGGAAAGAACAGGGACAAGAGTCAGGGAAA
s panTro5.chr6             29836311 255 + 175400573 AAGTTCACAGTTCTGATTCTCAGCTCCCATACCACAGACAAG-CCACCATTGTTCAGGAGACCTTTGAGCAGATCCCCTTCCTTTGCCTTCAATGGCTCCCTCCTCTTCTCTGCAAGGCCTGCCATGGCAACCTTGGAACTGACAAGTAAACTACAGAATG-AAAATGGCCTGCAGGCACAGAAAGA------------AGGGACAGAGCCAAACACAGACC-AGAGGGGTGATGCTAGAAGGAAAGAACAGGGACAAGAGTCAGGGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30071137 255 + 173848474 AAGTTCACAGTTCTGATTCTCAGCTCCCATACCACAGACAAG-CCACCATTGTTCAGGAGACCTTTGAGCAGATCCCCTTCCTTTGCCTTCAATGGCTCCCTCCTCTTCTCTGCAAGGCCTGCCATGGCAACCTTGGAACTGACAAGTAAACTACAGAATG-AAAATGGCCTGCAGGCACAGAAAGA------------AGGGACAGAGCCAAACACAGACC-AGAGGGGTGATGCTAGAAGGAAAGAACAGGGACAAGAGTCAGGGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5877420 254 +   6154872 AAGTCCACAGTTCTGATTCTCAGCCCCCATACCACAGACAAG-CCACCATTGTTCAGGAGACCTTTGAGCAGATCCCCTTCCTTTGCCTTCAGTGGCTCCCTCCTCTTCTCTGCAAGGCCTGCCATGGCAACCTTGGAACTGACAAGTAAACTACAGAATG-AAAATGGCCTGCAGGCACAGAAAGA------------AGGGACAGAGCCAAACAGAGAAC-AGAGGGGTGATGCTAGAAGGAAAGAA-AGGGACAAGAGTCAGGGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74586246 255 + 122973662 AAGTCCACAGTTCTGATTCTCAGCCCCCACACCACAGACAAG-CCACCATTGTTCAGGAGACCTTTGAGCAGATCCCCTTCCTTTGCCTTCAATGGCTCCCTCCTCTTCCCTGCAAGGCCTGCCATAGCAACCTTGGAACTAACAAGTAAACTACAGAATG-AAAATGCCCTGCAGGCACAGAAAGA------------AGGGACAGAGCCAAACAGAGACC-AGAGGGGTGATGCTAGAAGGAAAGAACAGGGACAAGAGTCAGGGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30067480 252 + 172585720 AGGTCCACAGTTCTGATTCTCAGCCCCCACACCACAGACAAG-CAACCATTGTTCAGGAGACCTTTGAGCAAATCCCCTTCCTTTGCCTTCAATGGCTC---CCTCTTCTCTGCAAGGCCTGCCATGGCAACCTTGGAACTGACAAGTGAACTACAGAATG-AAAATGGCCTGCAGGCACAGAAAGA------------AGGGACAGAGCCAAACAGAGACC-AGAGGGGTGATGCTAGAAGGAAAGAACAGGGACAAGAGTCAGGGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29730324 252 - 170955103 AGGTCCACAGTTCTGATTCTCAGCCCCCACACCACAGACAAG-CAACCATTGTTCAGGAGACCTTTGAGCAAATCCCCTTCCTTTGCCTTCAATGGCTC---CCTCTTCTCTGCAAGGCCTGCCATGGCAACCTTGGAACTGACAAGTGAACTACAGAATG-AAAATGGCCTGCAGGCACAGAAAGA------------AGGGACAGAGCCAAACAGAGACC-AGAGGGGTGATGCTAGAAGGAAAGAACAGGGACAAGAGTCAGGGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2775743 252 -   2996164 AGGTCCACAGTTCTGATTCTCAGCCCCCACACCACAGACAAG-CAACCATTGTTCAGGAGACCTTTGAGCAAATCCCCTTCCTTTGCCTTCAATGGCTC---CCTCTTCTCTGCAAGGCCTGCCATGGCAACCTTGGAACTGACAAGTGAACTACAGAATG-AAAATGGCCTGCAGGCACAGAAAGA------------AGGGACAGAGCCAAACAGAGACC-AGAGGGGTGATGCTAGAAGGAAAGAACAGGGACAAGAGTCAGGGAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     529371 252 +    766320 AGGTCCACAGTTCTGATTCTCAGCCCCCACACCACAGACAAG-CAAGCATTGTTCAGGAGACCTTTGAGCAAATCCCCTTCCTTTGCCTTCAATGGCTC---CCTCTTTTCTGCAAGGCCTGCCATGGCAACCTTGGAACTGACAAGTGAACTACAGAATG-AAAATGGCCTGCAGGCACAGAAAGA------------AGGGACAGAGCCAAACAGAGACC-AGAGGGGTGATGCTAGAAGGAAAGAACAGGGACAAGAGTCAGGGAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28986213 252 -  71996105 AAGTCCACAGTTCTGATTCTCAGCCCCCACACCACAGACAAG-CAACCATTGTTCAGGAGACCTTTGAGCAAATCCCCTTCCTTTGCCTTCAATGGCTC---CCTCTTCTCTGCAAGGCCTGCCATGGCAACCTTGGAACTGACAAGTGAACTACAGAATG-AAAATGGCCTGCAGGCACAGAAAGA------------AGGGACAGAGCCAAACAGAGACC-AGAGGGGTGATGCTAGAAGGAAAGAACAGGGACAAGAGTCAGGGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     162366 252 +    290775 AGGTCCACAGTTCTGATTCTCAGCCCCCACACCACAGACAAG-CAACCATTGTTCAGGAGACCTTTGAGCAAATCCCCTTCCTTTGCCTTCAATGGCTC---CCTCTTCTCTGCAAGGCCTGCCATGGCAACCTTGGAACTGACAAGTGAACTACAGAATG-AAAATGGCCTGCAGGCACAGAAAGA------------AGGGACAGAGCCAAACAGAGACC-AGAGGGGTGATGCTAGAAGGAAAGAACAGGGACAAGAGTCAGGGAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2620800 255 -   3067355 AAGTCCACAGTTCTGATTCTCAGCCCCCATACCACAGACAAG-CAACCATTGTTCAGGAGACCTTTGAGCAAATCCCCTTCCTTTGCCTTCAATGGCTCCCTCCTCTTCTCTGCAAGACCTGCCATGGCAACCTTGGAACTGACAAGTGAACTACAGAATG-AAAATGGCCTGCAGGCACAGAAAGA------------AGGGACAGAGCCAAACAGAGACC-AGAGGGGTGATGCTAGAAGGAAAGAACAGGGACAAGAGTCAGGGAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30059989 247 + 171630274 AAGTCCGCAATTCTGATTCTCAGCCAGCACACCTTAGACAAG-CCATCATTGTTCAGGAGACTTTTGAGCAGACCTCCTTCCTTTGTCTTCAATGTCTCCCTCCTCTTCTCTGCAAGGCCTACCATGGCAACCTTGGAACTGACAAGTAAACTACAGAATG-AAAATGGCCTGGAGGCACAGAAAGA--------------------AGCCAAACAGAGACC-AGAGTAGTGATGCTACAAGCAAAGAACAGGGACAAGAGTCACGGAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           208165 255 -    242197 AAGTCCGCAATTCTGATTCTCAGCCAGCACACCATAGACAAG-CCATCATTGTTCAGGAGACCTTTGGGCAGACCCCCTTCCTTTGTCTTCAGTGTCTCCCTCCTCTTCTCTGCAAGGCCTACCATGGCAACCTTGGAACTCACAAGTAAACTACAGAATG-AAAATGACCTGGAGGCACAGAAAGA------------AGGGACAGAGCCAAACAGAGGCC-AGAGGAGTGATGTTACAAGCAAAAAACAGGGACAGGAGTCACGGAAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     201545 255 -   1771730 AAGTCCGCAATTCTGATTCTCAGCCGGCATGCCATAGACAAG-CCATCGTTGTTCAGGAGACCTTTGGACAGACCCCCTTCCTTTGTCTTCAATGTCTCCTTCCTCTTCTCTGCAAGGCCTACCATGGCAACCTTGGAACTGACAAGTAAACTACAGAATG-AAAATGGCCTGGAGGCACAGAAAGA------------AGGAACAGAGCCAAACAGAGACT-GGAGGAGTGATGCTACAAGCAAAGAACAGGGTCAAGAGTCACGGAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     275904 255 -    457564 AAGTCCGCAATTCTGATTCTCAGCCGGCACACCATAGACAAG-CCATCATTGTTCAGGAGACCTTTGGGCAGACCCCCTTCCTTTGTCTTCAGTGTCTCCCTCCTCTTCTCTGCAAGGCCTACCATGGCAACCTTGGAACTGACAAGTAAATTACAGAATG-AAAATGGCCTGGAGGCACAGAAAGA------------AGGGACAGAGCCAAACAGAGACC-AGAGGAGAGATGCTACAAGCAAAGAACAGGGACAAGAGTCAAGGAAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                89787 249 + 123392446 AAGTCCACAGTCCTGGTTCTCAGTCCCCAAACCACAGACAAG-CCCCCACTGTTCAGG-GTTTTTGGAGCAGAACCCCTTCCTTTGTCCTCAGCGCCTCACTCCTTTTCCTCGCAAGGCATGCCATGGCAACGCTGGAACTGACAAGTGAAC-ACAAAATG-AAAAAGGTCTGGAGGCACAGAAAGA------------AGGAACAGAGCCAGAAAG----C-ACAGGGCTGACACTAGGAGGAAGGAACAGGGACAAGAGACAGCGGAA
i micMur3.chr6             I 1377 I 71
s proCoq1.NW_012152574v1     584581 249 +    730504 AAGTCCACAGTTCTGGTTCTT-GCCCCCACACCACACACAAG-CCCCCATTGTTCAGG-GTTTTTTGAGCAGACCCCCTTCCTTTGTCCTCAGCGCCTCCCTCCTTTTCCCTGCAAGGCACGCCATGGCAACGCTGGAACTGACAAGTAAAC-ACAGAATG-AAAAAGGTCTGGAGGCACAGAAAGA------------AGGAACAGAGCCAGAAAG----CAAAAGGGCTGACACTAGGAGGAAGGAACAGGGACAAGAGGCAGAGAAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            96424 251 +  18854210 AAGTCCACAGTTCTGGTTCTCAGCTCCCACACCACAGACAAGCCCCCCATTGTTCAGG-GTTCTTTGGGGAGACCCCCTTCCTTTGTGTTCATTGCCTCCCTTCTCTTCCCTGCAAGGGGTGCCATGGCAACGCTAGAACTGACAAGTAAAC-ACAGAATGAAAAAAGATCTGGAGGCACAGAAAAA------------AGGGACAGAGCCAGAAAG----C-ATAAGGGTGATGCCAGGAGGAAGTAGCAGGGACAAGAGGCAGGAAAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57919026 263 -  94987271 AAGCCCACAGTTTTGTTTCTCAGCCCATACACCACAGACAAG-TCATCATTGTTCACAGGTTCTGTATGCAGATC-CCTTTTTTTGTCTTCTGTAAGTCACCCCTCTCCTCTCCAAGGCATGCC-TAGCAACCTTGCCAACAGCCAGAGAACTGTAGAATG-GAATAGGTCTG-GCACCCAGAAAGAAGAGCCAGAGCTAGAGCCAGAGCCAGAGAGAGACC-AGAGG-GTGATACTAGGAGGCAGGAAAGGAGACACTAGTCAGGGAAA
i mm10.chr17               I 1 C 0
s canFam3.chr35            26216847 194 +  26524999 --GCGTGTACTCCCTGCT----GTCTCCACAGCACAGGCAAG-CTGCCATTGTCCCAG-GTTCTTTGAGCAGACTCCC-TCCTATACCCCCAGTCCCTCC--CCTCTTCAGTGTGAGG----CCGTGGCAACCTTGGAACTGCCTGGAGAGTGGCACAGTG-A----GGCCTGGATGACTGGAA-------------------------------------C-AGAAGGGTGGTGTCAGCAGG-----ACAGGGACA-------------
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            24636 614 +    102524 M

a score=1141927.000000
s hg38.chr6_GL000254v2_alt   873896 92 +   4827813 GCTGAGGAGGAAGGGCAGAGAATCATAAATCATGGAAGGTGCTCCTGAGACGGGTGGGAGAGTCACATCCTGTAAG----GAATTTGCCCACCACC
s panTro5.chr6             29836566 92 + 175400573 GCTGAGGAGGAAGGGCAGAGAATCATAAATCATGGAAGGTGCTCCTGAGACGGGTGGGAGAGTCACATCCTGTAAG----GAATTTGCCCACCACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30071392 92 + 173848474 GCTGAGGAGGAAGGGCAGAGAATCATAAATCATGGAAGGTGCTCCTGAGACGGGTGGGAGAGTCACATCCTGTAAG----GAATTTGCCCACCACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5877674 92 +   6154872 GCTGAGGAGGAAGGGCAGAGAATCACAAATCATGGAAGGTGCTCCTGAGACGGGTGGGAGAGTCACATCCTGTAAG----GAATTTGCCCACCACC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74586501 92 + 122973662 GCTGAGGAGAAAGGGCACAGAATCATAAATCATGGGAGGCGTTCCTGAGACGGGTGGGAGAGCCACATCCTGTAAG----GAATTTGCCCACCACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30067732 92 + 172585720 GCTGAGGAGGAAAGGCAGAGAACCATAAATCATGGAAGGCGCTCCTGAGACGGGTGGGAGAGCCACATTCTGTGAG----GAATTTGCCCACCACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29730576 92 - 170955103 GCTGAGGAGGAAAGGCAGAGAACCATAAATCATGGAAGGCGCTCCTGAGACGGGTGGGAGAGCCACATTCTGTGAG----GAATTTGCCCACCACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2775995 92 -   2996164 GCTGAGGAGGAAAGGCAGAGAACCATAAATCATGGAAGGCGCTCCTGAGACGGGTGGGAGAGCCACATTCTGTGAG----GAATTTGCCCACCACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     529623 92 +    766320 GCTGAGGAGGAAAGGCAGAGAACCATAAATCATGGAAGGCGCTCCTGAGACGGGTGGGAGAGCCACATTCTGTGAG----GAATTTGCCCACCACC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28986465 92 -  71996105 GCTGAGGAGGAAAGGCAGAGAAGCATAAATCATGGAAGGCGCTCCTGAGACGGGTGGGAGAGCCACATTCTGTGAG----GAATTTGCCCACCACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     162618 92 +    290775 GCTGAGGAGGAAAGGCAGAGAACCATAAATCATGGAAGGCGCTCCTGAGACGGGTGGGAGAGCCACATTCTGTGAG----GAATTTGCCCACCACC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2621055 92 -   3067355 GCTGAGGAGTAAAGGCAGAGAACCATAAACCATGGAAGGCGCTCCTGAGACGGGTGGGAGAGCCACATTCTGTGAG----GAATTTGCCCACCACC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30060236 92 + 171630274 GCTGAGGAGGAAAGGCAGAGAACTATAAATCACTGGAGGCGCTCCTGAGATGGGTGGTAGAGCCATATTCTGTGAG----GAATTTGCCCAGCACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           208420 92 -    242197 GCTGAGGAGGAAAGGCAGAGAACCATAAATCACTGGAGGCACTCCTGAGATGGGTGGGAGAGCCATATTCTGTGAG----GAATTTGCCCACCACC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     201800 92 -   1771730 GCTGAGGAGGAAAGGCAGAGAAGCATAAATCACTGGAGGTACTCCTGAGATGGGTGGGAGAGCCATATTCTGTGAG----GAATTTGCCCACCACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     276159 92 -    457564 GCTGAGGAGGAAAGGCAGAGAATCAGAAATCACTGGAGGCACTCCTGAGATGGGTGGGAGAGCCATATTCTGTAAG----GAATTTGCCCACCACC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     584830 82 +    730504 --------------GATGGGAACCACACATCATGGAAGGGGCTCCCAAGAGGGCTGGGAGAGTCCCATCCTGCAAGGCGCGTGTGTGCCCACCACC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            96675 78 +  18854210 --------------GGTGAGAATCACACATCATGGAAGGGGCTCCAGGGACGGGTGGAAGAGCTACATCCTGCAAG----GTATTTGCCCACCACC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57919289 67 -  94987271 ------GAGGAAAGATAG---------------GGAAGGTGCTCCTGAGAGGGCTAGGAAAGCCATGTTCTG--------CAATTGGCCCACCATC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26217041 67 +  26524999 ---GTTGAGAAAAGGCAG------------------AGGGGCTCC----AGGGTGGGGCCAGCCCTATCGGGCCAG----GCATCTGCCCACCTCC
i canFam3.chr35            C 0 C 0
e micMur3.chr6                90036 71 + 123392446 I
e dasNov3.JH582591            24636 614 +    102524 M

a score=788953.000000
s hg38.chr6_GL000254v2_alt   873988 43 +   4827813 TCCTCACCTGGCAGACGAAAGGAAACTGGTTCCTCCCAATGTG
s panTro5.chr6             29836658 43 + 175400573 TCCTCACCTGGCAGACGAAAGGGAACTGGTTCCTCCCAATGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30071484 43 + 173848474 TCCTCACCTGGCAGACGAAAGGGAACTGGTTCCTCCCAATGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5877766 43 +   6154872 TCCTCACCTGGCAGACGAAAGGGAACTGGTTCCTCCCAATGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74586593 43 + 122973662 TCCTCACCTGGCAGACGAAAGGGAACTGGTTCCTCCCAATGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30067824 43 + 172585720 TCCTCACCTGGCAGACGAAAGGGAACTGGTTCCTCCCAATGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29730668 43 - 170955103 TCCTCACCTGGCAGACGAAAGGGAACTGGTTCCTCCCAATGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2776087 43 -   2996164 TCCTCACCTGGCAGACGAAAGGGAACTGGTTCCTCCCAATGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     529715 43 +    766320 TCCTCACCTGGCAGACGAAAGGGAACTGGTTCCTCCCAATGTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28986557 43 -  71996105 TCCTCACCTGGCAGACGAAAGGGAACTGGTTCCTCCCAATGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     162710 43 +    290775 TCCTCACCTGGCAGACGAAAGGGAACTGGTTCCTCCCAATGTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2621147 43 -   3067355 TCCTCACCTGGCAGACGAAAGGGAACTGGTTCCTTCCAATGTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30060328 43 + 171630274 TCCTCACCTGGCAGACGAAAGGGAACTGGTTCCTCCCAATGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           208512 43 -    242197 TCCTCACCTGGCAGACGAAAGGGAACTGGTTCCTCCCAATGTG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     201892 43 -   1771730 TCCTCACCTGGCAGACGAAAGGGAACTGGTTCCTCCCAATGTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     276251 43 -    457564 TCCTCACCTGGCAGACGAAAGGAAACTGGTTCCTCCCAATGTG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                90107 43 + 123392446 TCCTCACCTGGCACACGAAGGGGAACTGGTTTCGGCCAATGTG
i micMur3.chr6             I 71 C 0
s proCoq1.NW_012152574v1     584912 43 +    730504 TCCTCACCTGGCAGACAAAGGGGAACTGGTTCCTGCCGATGTG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            96753 43 +  18854210 TCCTCACCTGGCAGACGAAAGGGAATTGGTTTCTCCCAATGTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57919356 43 -  94987271 TACTCACCTGGCAGACAAATGGGAACTGGCTTCTCCCTATGTG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26217108 43 +  26524999 TCCTCACCTGACACACAAAAGGAAACTGGCTTCTCCCGATGTG
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            24636 614 +    102524 M

a score=3929653.000000
s hg38.chr6_GL000254v2_alt   874031 238 +   4827813 GTAACCATCGAGCCCCAGGGGGAAGACAGCAGCTAAAGCCAGTGAGCAGCCCACAGCAGTCAGGTTGTTCAGGTTGGGCTGTGAGTTCTGGATATAACTAGGGCAGAGGTGGAGAGGGT----GAGAGGGAGAG-A--GAATTACCCC-TCTTCTCCAGGGAGGCTGAGCTCTCC--AAATACCACGCAATGGCATGACCCTAA--TTTCAGGGCCA-GGGGCTAAAGGAAGACAGGATTGGAGAAGACAG
s panTro5.chr6             29836701 238 + 175400573 GTAACCATCGAGCCCCAGGGGGAAGACAGCAGCTAAAGCCAGTGAGCAGCCCACAGCAGTCAGGTTGTTCAGGTTGGGCTGTGAGTTCTGGATATAACTAGGGCAGAGGTGGAGAGGGT----GAGAGGGAGAG-A--GAATTACCCC-TCTTCTCCAGGGAGGCTGAGCTCTCC--AAATACCATGCAATGGCATGACCCTAA--TTTCAGGGCCA-GGGGCTAAAGGAAGACAGGATTGGAGAAGACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30071527 238 + 173848474 GTAACCATCGAGCCCCAGGGGGAAGACAGCAGCTAAAGCCAGTGAGCAGCCCACAGCAGTCAGGTTGTTCAGGTTGGGCTGTGAGTTCTGGATATAACTAGGGCAGAGGTGGAGAGGGT----GAGAGGGAGAG-A--GAATTACCCC-TCTTCTCCAGGGAGGCTGAGCTCTCC--AAATACCATGCAATGGCATGACCCTAA--TTTCAGGGCCA-GGGGCTAAAGGAAGACAGGATTGGAGAAGACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5877809 238 +   6154872 GTAACCATCCAGCCCCAGGGGGAAGACAGCAGCTAAAGCCAGTGAGCAGCCCACAGCAGTCAGGTTGTTCAGGTTGGGCTGTGAGTTCTGGATATAACTAGGGCAGAGGTGGAAATGGT----GAGAGGGAGAG-A--GAATTACCCC-TCTTCTCCAGGGAGGCTGAGCTCTCC--AAATACCACGCAATGGCATGACCCTAA--TTTCAGGGCCA-GGGGCTAAAGGAAGACAGGATTGGAGAAGACAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74586636 238 + 122973662 GTAACCATCCAGCCCCAGGGGGAAGACAGCAGCTAAAGCCAGTGAGCAGCCCACAGCAGTCAGGTTGTTCAGGTTGGGCTGTGAGTTCTGGATATAACTAGGGCAGAGGTGGAGAGGGT----GAGAGGGAGAG-A--GAATTACCCC-TCTTCTCCCTGGAGGCTGAGCTCTCT--AAATACCATGCAATGGCATGACCCTAA--TTTCAGGGCCA-GGGGCTAAAGGAAGACAGGATTGGAGAAGACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30067867 238 + 172585720 GTAACCATCCAGCCCCAGGGGGAAGACAGCAGCTAATGCCAGTGAGCAGCCCACAGCAGTCAGGTTGTTCAGGTTGGGCTGTGAGTTCTGGATATAACTAGGGCAGAGGTGGAGAGGGT----GACAGGGAGAG-A--TAATTACCCC-TCTTCTCCAGGGAGGCTGAGCTCTCC--AAATACCATGCAATGGCATGACCCTAA--TTTCAGGGCCA-GGGGCTAAAGGAAGACAGGATTGGAGAAGACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29730711 238 - 170955103 GTAACCATCCAGCCCCAGGGGGAAGACAGCAGCTAATGCCAGTGAGCAGCCCACAGCAGTCAGGTTGTTCAGGTTGGGCTGTGAGTTCTGGATATAACTAGGGCAGAGGTGGAGAGGGT----GACAGGGAGAG-A--TAATTACCCC-TCTTCTCCAGGGAGGCTGAGCTCTCC--AAATACCATGCAATGGCATGACCCTAA--TTTCAGGGCCA-GGGGCTAAAGGAAGACAGGATTGGAGAAGACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2776130 238 -   2996164 GTAACCATCCAGCCCCAGGGGGAAGACAGCAGCTAATGCCAGTGAGCAGCCCACAGCAGTCAGGTTGTTCAGGTTGGGCTGTGAGTTCTGGATATAACTAGGGCAGAGGTGGAGAGGGT----GACAGGGAGAG-A--TAATTACCCC-TCTTCTCCAGGGAGGCTGAGCTCTCC--AAATACCATGCAATGGCATGACCCTAA--TTTCAGGGCCA-GGGGCTAAAGGAAGACAGGATTGGAGAAGACAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     529758 238 +    766320 GTAACCATCCAGCCCCAGGGGGAAGACAGCAGCTAATGCCAGTGAGCAGCCCACAGCAGTCAGGTTGTTCAGGTTGGGCTGTGAGTTCTGGATATAACTAGGGCAGAGGTGGAGAGGGT----GACAGGGAGAG-A--TAATTACCCC-TCTTCTCCAGGGAGGCTGAGCTCTCC--AAATACCATGCAACGGCATGACCCTAA--TTTCAGGGCCA-GGGGCTAAAGGAAGACAGGATTGGAGAAGACAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28986600 238 -  71996105 GTAACCATCCAGCCCCAGGGGGAAGACAGCAGCTAATGCCAGTGAGCAGCCCACAGCAGTCAGGTTGTTCAGGTTGGGCTGTGAGTTCTGGATATAACTAGGGCAGAGGTGGAGAGGGT----GACAGGGAGAG-A--GAATTACCCC-TCTTCTCCAGGGAGGCTGAGCTCTCC--AAATACCATGCAACGGCATGACCCTAA--TTTCAGGGCCA-GGGGCTAAAGGAAGACAGGATTGGAGAAGACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     162753 238 +    290775 GTAACCATCCAGCCCCAGGGGGAAGACAGCAGCTAATGCCAGTGAGCAGCCCACAGCAGTCAGGTTGTTCAGGTTGGGCTGTGAGTTCTGGATATAACTAGGGCAGAGGTGGAGAGGGT----GACAGGGAGAG-A--TAATTACCCC-TCTTCTCCAGGGAGGCTGAGCTCTCC--AAATACCATGCAACGGCATGACCCTAA--TTTCAGGGCCA-GGGGCTAAAGGAAGACAGGATTGGAGAAGACAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2621190 238 -   3067355 GTAACCATCCAGCCCCAGGGGGAAGACAGCAGCTAATGCCAGTGAGCAGCCCACAGCAGTCAGGTTGTTCAGGTTGGGCTGTGAGTTCTGGATATAACTAGGGCAGAGGTGGAGAGGGT----GACAGGGAGAG-A--TAATTACCCC-TCTTCTCCAGGGAGGCTGAGCTCTCC--AAATACCATGCAACGGCATGACCCTAA--TTTCAGGGCCA-GGGGCTAAAGGAAGACAGGATTGGAGAAGACAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30060371 236 + 171630274 ATAACCATCCAGCCCAAGAGGGAAGACAGCAGCTAATGCCAGTGAGCAGCCCACAGCAGTCAGGTTGTTCAGGTTGGGCTGTGAGTTCTGGATATAACTAGGGCAGAGGTGGAGAGGGT------GAGAGAGAG-A--GAATTACTCT-TCTTCTCCAGGGAGGCTTAGCTCTCC--AAATGCCATGCAACGGCATGACCCCAA--TTTCAGGGCCA-GGGGCTAAAGGAAGACAGGATTGGAGAACACAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           208555 240 -    242197 GTAACCATCCAGCCCAAGAGGGAAGACAGCAGCTAATGCCAGTGAGCAGCCCACAGCAGTCAGGTTGTTCAGGTTGGGCTGTGAGTTCTGGATATAACTAGGGCAGGGGTGGAGAGAGT----GAGAGAGAGAG-A--GAATTACCCT-TCTTCTCCAGGGAGGCTTAGCTCTTC--AAATGCCATGCAACAGCATGACCCCAATTTTTCAGGGCCA-GGGGCTAAAGGAAGACAGGATTGGAGAAGATAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     201935 233 -   1771730 GTAACCATCCAGCCCAAGAGGGAAGACAGCAGCCAATGCCAGTGAGCAGCCCACAGCAGTCAGGTTGTTCAGGTTGGGCTGTGAGTTCTGGATATAACTAGGGCAGAGGTGGAGAGAGT------GAAAGAGAG-A--GAATTACC----CTTCTCCAGGGAGGCTTAGCTCTCC--AAATGCCATGCAATGGCATGACCCCAA--TTTCAGGGCCA-GGGGCTGAAGGAAGACAGGATTAGAGAAGACAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     276294 236 -    457564 GTAACCATCCAGCCCAAGAGGGAAGACAGCAGCTAATGCCAGTGAGCAGCCCACAGCAGTCAGGTTGTTCAGGTTGGGCTGTGAGTTCTGGATATAACTAGGGCAGAGGTGGAGAGGGT------GAGAGAGAG-A--GAATTACCCT-TCTTCTCCAGGGAGGCCTAGCTCTCC--AAATGCCATGCAACAGCATGACCCCAA--TTTCAGGGCCA-GGGGCTAACGGAAGACAGGATTGGAGAAGACAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                90150 238 + 123392446 GTAGCCGTCCAGGCCAAGGGGGAAGACGGCAGCTAGCGCCAGCGAGCAGCCCACGGCAGTCAGGTTGTTCAGGTTGGGCTGTGAGTTCTGGATATAACTAGGGCAGGGGCAG-GAGGGT-GGAGAGGGAGAGAG-A--GCATTA--CC-TCTTCCTCAGGGAGGCTCAGCTCTCC--AAATGCCCTGCAATGGCATGACCCCTC--C-TTAGGTCCACGGGACGAAACGAAGACGGGATTGGAGTAGGCAG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     584955 240 +    730504 GTAGCCATCCAGGCCAAGGGGGAAGACAGCAGCTAGCGCCAGCGAGCAGCCCACGGCAGTCAGGTTGTTCAGGTTGGGCTGCGAGTTCTGGATATAACTAGGGCAGGGGTGG-GAGGGT-GGAGAGGGAGAGAG-A--GGATTACCCC-TCTTGTTCAGGGAGGCTCAGCTCTCC--AAATGCCATGCAACGGCATGACCCCTC--C-TTAGGGCCACGGGACAAAAGGAAGACAGGATTGGAGTAGGCAG
i proCoq1.NW_012152574v1   C 0 I 86
s otoGar3.GL873550            96796 242 +  18854210 GTAACCATCCAGCCCGAGGGGGAAGACAGCAGCGAGTGCCAGTGAGCAGCCCACAGCAGTCAGGTTGTTCAGGTTGGGCTGTGAGTTCTGGATATAACTAGGGCAGAGGTAG-GAGGGTGGGAGAGGGAGAGAG-A--GAATTACCCC-TCTTCTCCAGGGAGGTTTAGTTCTCC--AAATGCCATGCAATGGCATGACCCCTC--CTTTGGGGCCCTAGGACGAAAGGAAGACAGGGTTGAAGTAGGCAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57919399 236 -  94987271 GTAACCATCCAGCCCAAGGGGGAAGACAGCAGCTAGTGCCAGTGAGCAGCCCACAGCAGTCAGATTGTTCAGGTTGGGCTGGGAGTTCTGGATATAACTAGGGCAGAGGCGGAGAGGGT----GGGAGAAAGAGCA--GAATTACCCCATCTCCTCCAGGGAGGCTCGGCTCTCCAGAAATGCCAT-CAATAGCACGACCCTAT--CCCCAGGGCAG-A-----AAAAGGAGACAGGCTGGGGACAGGCAG
i mm10.chr17               C 0 I 1
s canFam3.chr35            26217151 196 +  26524999 GTACCCATCTAGCCCCAGGGGGAAGACGGCAGCCAACGCCAGGGAGCAGCCCACAGCAGTCAGATTGTTCAAGTTGGGCTGGGAGTTCTGGATGTAACTAGGGCAGAGGCAGGAGAGGA----GACAGAGAGGA-GCCGAATTAACC--TCTTCTCTGCAGATGCC-AGCTCTTC--A------------------GTGCCCAA--CTTCCGGCCTT----------GGAAGACAG---------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            25251 189 +    102524 GTAGCCGTCCAGCCCCAGGGGGTAGACAGCGGCCAGTGCCAGCGAGCAGCCCACAGCTGTCAGGTTGTTCAGTGTAGGCTGGGAGTTCTGGATGTAACTAGGGCAGGGGCGGAGAGAGC--------------G-G--G--TCACCCA---------------------CACTGC--A--------------GCCTGG-CCTAA--GCTCATGGCCA-TGGGCAGCGGGCAG-CAGAGCGGGGGATGAAG-
i dasNov3.JH582591         M 614 C 0

a score=73974.000000
s hg38.chr6_GL000254v2_alt   874269 6 +   4827813 TGGAGC--
s panTro5.chr6             29836939 6 + 175400573 TGGAGC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30071765 6 + 173848474 TGGAGC--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5878047 6 +   6154872 TGGAGC--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74586874 6 + 122973662 TGGAGC--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30068105 6 + 172585720 TGGAGC--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29730949 6 - 170955103 TGGAGC--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2776368 6 -   2996164 TGGAGC--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     529996 6 +    766320 TGGAGC--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28986838 6 -  71996105 TGGAGC--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     162991 6 +    290775 TGGAGC--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2621428 6 -   3067355 TGGAGC--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30060607 6 + 171630274 TGGAGC--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           208795 6 -    242197 TAGAGC--
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     202168 6 -   1771730 TGGAGC--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     276530 6 -    457564 TGGAGC--
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                90388 6 + 123392446 TGGAGC--
i micMur3.chr6             C 0 I 68
s otoGar3.GL873550            97038 6 +  18854210 CAGAAC--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57919636 6 -  94987271 AAGAAC--
i mm10.chr17               I 1 C 0
s dasNov3.JH582591            25440 8 +    102524 TTGACTGT
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     585195 86 +    730504 I
e canFam3.chr35            26217347 0 +  26524999 C

a score=853259.000000
s hg38.chr6_GL000254v2_alt   874275 85 +   4827813 CTTGAGAGGCAGAGCAATGCAG-TCATGGGGCTGAAGATGGAGTTGCAGAGGGCTTCCCAAGCACA-GGCCCCCACTAGAATACAGG
s panTro5.chr6             29836945 85 + 175400573 GTTGAGAGGCAGAGCAATGCAG-TCATGGGGCTGAAGATGGAGTTGCAGAGGGCTTCCCAAGCACA-GGCCCCCACTAGAATACGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30071771 85 + 173848474 CTTGAGAAGCAGAGCAATGCAG-TCATGGGGCTGAAGATGGAGTTGCAGAGGGCTTCCCAAGCACA-GGCCCCCACTAGAATACGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5878053 85 +   6154872 CTTGAGAGGCAGAGCAATGCAG-TCATGGGGCTGAAGATGGAGTTGCAGAGGGCTTCCCAAGCACA-GGCCCCCACTAGAATACAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74586880 85 + 122973662 CTTGAGAGGCAAAGCAATGCAG-TCATGGGGCTGAAGATGGAGTTGCAGAGGGCTTCCCAAGCACA-GAACCCCACCAGAATACGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30068111 85 + 172585720 CTTGAGAGGCAAAGCAATGCAG-TCATGGGGCTGAAGATGGAGTTGCAGAGGGCTTCTCAAGCACA-GGCTCCCACTAGAATACAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29730955 85 - 170955103 CTTGAGAGGCAAAGCAATGCAG-TCATGGGGCTGAAGATGGAGTTGCAGAGGGCTTCTCAAGCACA-GGCTCCCACTAGAATACAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2776374 85 -   2996164 CTTGAGAGGCAAAGCAATGCAG-TCATGGGGCTGAAGATGGAGTTGCAGAGGGCTTCTCAAGCACA-GGCTCCCACTAGAATACAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     530002 85 +    766320 CTTGAGAGGCAAAGCAATGCAG-TCATGGGGCTGAAGATGGAGTTGCAGAGGGCTTCCCAAGCACA-GGATCCCACTAGAATACAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28986844 85 -  71996105 CTTGAGAGGCAAAGCAATGCAG-TCATGGGGCTGAAGATGGAGTTGCAGAGGGCTTCCCAAGCACA-GGCTCCCACTAGAATACAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     162997 85 +    290775 CTTGAGAGGCAAAGCAATGCAG-TCATGGGGCTGAAGATGGAGTTGCAGAGGGCTTCCCAAGCACA-GGATCCCACTAGAATACAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2621434 85 -   3067355 CTTGAGAGGCAAAGCAATGCAG-TCATGGGGCTGAAGATGGAGTTGCAGAGGGCTTCCCAAGCACA-GGCTCCCACTAGAATACAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30060613 84 + 171630274 CTTGAGAGGCAAAGCAATGCAG-TCATGGGGCTGAAGATGGGGTTACAGATGCCTTCTGGAGCACAGGGCCCCCACTAAAAT--AGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           208801 86 -    242197 CTTGAGAGGCAAAGCAATGCAT-TCATGGGGCTGAAGGTTGGGTTACAGATGCCTTCTGGAGCACAGGGCCCCCACTAGAATAAAGT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     202174 86 -   1771730 CTTGAGAGGCAAAGCAATGCAG-TCATGGGGCTGAAGTTAGGGTTACGGATGCCTTCGGGAGCGCAGGGCCCCCACTAGAATACAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     276536 86 -    457564 CTTGAGAGGCAAAGCAGTGCAG-TCATGGGGCTGAAGGTGGGGTTACAGATGCCTTCTGGAGCACAGGGCCCCCACTAGAATACAGT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            97044 73 +  18854210 CTTGAGA-GCATAGCACCTCCA-TCAGGGAGCTGGAACCGGAGTGGCAGAGACTTCCTCTGGCACA-GGGCACAAA-----------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57919642 81 -  94987271 ACTCAGGATAAGAACACTGCTGAACGGAGGACTGGACCTAGGGGAGCCCAGGGCTTCTGCAGCATA-AGGCCCTACTGGAAT-----
i mm10.chr17               C 0 C 0
s canFam3.chr35            26217347 74 +  26524999 --------ACAAAGCCGCCTGG-GCCAGGGGCTGGTGGTGGA--TGCAGGGG--CTCCACGGCAGGGGACCCCCGCCAGCACACACA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            25448 42 +    102524 -----------------CCCGG-CAGGGGAGCTGGAGATGGTGCTGCAGA-----------------GGGCCCCACC----------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                90394 68 + 123392446 I
e proCoq1.NW_012152574v1     585195 86 +    730504 I

a score=81088.000000
s hg38.chr6_GL000254v2_alt   874360 9 +   4827813 CTATTTATG
s panTro5.chr6             29837030 9 + 175400573 CTATTTATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30071856 9 + 173848474 CTATTTATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5878138 9 +   6154872 CTATTTATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74586965 9 + 122973662 CTATTTATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30068196 9 + 172585720 CTATCTATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29731040 9 - 170955103 CTATCTATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2776459 9 -   2996164 CTATCTATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     530087 9 +    766320 CTATCTATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28986929 9 -  71996105 TTATCTATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     163082 9 +    290775 CTATCTATG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2621519 9 -   3067355 CTATCTATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30060697 9 + 171630274 CTATTTATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           208887 9 -    242197 CTATTTATG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     202260 9 -   1771730 CTATTTATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     276622 9 -    457564 CTATTTCTG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                90462 9 + 123392446 ctactgatg
i micMur3.chr6             I 68 C 0
s otoGar3.GL873550            97117 3 +  18854210 CCA------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26217421 5 +  26524999 CTTTC----
i canFam3.chr35            C 0 C 0
e mm10.chr17               57919723 0 -  94987271 C
e dasNov3.JH582591            25490 0 +    102524 C
e proCoq1.NW_012152574v1     585195 86 +    730504 I

a score=1143288.000000
s hg38.chr6_GL000254v2_alt   874369 93 +   4827813 TAGAGTCCAAGACTGTGAGACCTGGCCCCAAAGGTTGTTTTTTTCTCTTCTTTTC-TTTTT---TCCTCCCGTTAGCTACTTTGGAGTAGGAGTGGG
s panTro5.chr6             29837039 93 + 175400573 TAGAGTCCAAGACTGTGAGACCTGGCCCCAAAGGTTGtttttttctcttcttttc-ttttt---tcttcCCGTTAGCTACTTTGGAGTAGGAGTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30071865 92 + 173848474 TAGAGTCCAAGACTGTGAGACCTGGCCCCAAAGGTTG-TTTTTTCTCTTCTTTTC-TTTTT---TCTTCCCGTTAGCTACTTTGGAGTAGGAGTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5878147 93 +   6154872 TAGAGTCCAAGACTGTGAGACCTGGCCCCAAAGGTTGTTTTTTTCTCTTCTTTTC-TTTTT---TCCTCCCGTTAGCTACTTTGGAGTAGGAGTAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74586974 93 + 122973662 TAGAGTCCAAGACTGTGAGACCTGGCCCCAAAGGTTGtttttttctcttcttttc-ttttt---tcttcCAGTTAGCTACTTTGGAGTAGGAGTGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30068205 93 + 172585720 TAGAGTCCAAGACTGTGAGACCTGGCCCCAAAGGTTGTTTTTTTCTCTTCTTTTC-TTTTT---CCTTCCGGTTAGCTACTTTGGAGTAGGAGTGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29731049 93 - 170955103 TAGAGTCCAAGACTGTGAGACCTGGCCCCAAAGGTTGTTTTTTTCTCTTCTTTTC-TTTTT---CCTTCCGGTTAGCTACTTTGGAGTAGGAGTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2776468 93 -   2996164 TAGAGTCCAAGACTGTGAGACCTGGCCCCAAAGGTTGTTTTTTTCTCTTCTTTTC-TTTTT---CCTTCCAGTTAGCTACTTTGGAGTAGGAGTGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     530096 93 +    766320 TAGAGTCCAAGACTGTGAGACCTGGCCCCAAAGGTTGTTTTTTTCTCTTCTTTTC-TTTTT---CCTTCCAGTTAGCTACTTTGGAGTAGGAGTGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28986938 93 -  71996105 TAGAGTCCAAGACTGTGAGACCTGGTCCCAAAGGTTGTTTTTTTCTCTTCTTTTC-TTTTT---CCTTCCAGTTAGCTACTTTGGAGTAGGAGTGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     163091 93 +    290775 TAGAGTCCAAGACTGTGAGACCTGGCCCCAAAGGTTGTTTTTTTCTCTTCTTTTC-TTTTT---CCTTCCAGTTAGCTACTTTGGAGTAGGAGTGGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2621528 93 -   3067355 TAGAGTCCAAGACTGTGAGACCTGGCCCCAAAGGTTGTTTTTATCTCTTCTTTTC-TTTTT---CCTTCCAGTTAGCTACTTTGAAGTAGGAGTGGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30060706 91 + 171630274 TAGAGTCCAAGACCGTGAGACCTGGCCCCAAA-GTTGTTTTTTTCTC--CTTTTCTTTTTT---TCTTCCATTTAGCTACTTTGGAGTAGGTGTGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           208896 88 -    242197 TAGAGTCCAAGA--GTAAGACCTGGCCCCAAA-GTGGTTTTTTTCT---CTTTTCTTTTTT---TCTTCCAGTTAGCTACTTTGGGGCAGGTGTGGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     202269 93 -   1771730 TAGAATCCAAGACCGTGAGACCTGGCCCCAAA-GTTGtttttttctcttcttttctttttt---tcttcCAGTTAGCTACTTTGGAGTAGGTGTGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     276631 93 -    457564 TAGAGTCCAAGACCGTGAGACCTGGCCCCAAA-Gttgtttttttctctttttttctttttt---tcttCCAGTTAGCTACTTTGGAGTAGGTGTGGG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                90471 84 + 123392446 tagagcccaa-actgtgtgacctggccccaaaggttgtttttt------cttttc-ttttt-----ttccagttAGCTGCTTCGGAGCAGGGGTGGG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     585281 85 +    730504 TAGAGCCCAAGGCTGTGTGACCTGGCCGCAAAGGTTGTTTTTT------CTTTTC-TTTTG-----TTCCAGTTAGCTGCTTTGGAGCAGGGGTGGG
i proCoq1.NW_012152574v1   I 86 C 0
s otoGar3.GL873550            97120 69 +  18854210 ----------GACTGCATGACCTGGCCCCAAAAGTTGATTTCT------CTTTTC-----------TGCTAGTTA-CTGCTTTGGAGTAGGGATGGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57919723 36 -  94987271 -------------------------------------------------------GTTTTTGGGTTTTCTAGCTGACTGCTTTGAAGCAAG------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26217426 66 +  26524999 ---AACCCCCCACTGTGTTACCTGGCCCCTAA----------------------C-ACTTT---TCT--CAGCCAGCTGCTGTGGAGCTGGATTGGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            25490 72 +    102524 CAGAGCCCA-GGCTGGGCTACCTGGCCCCAAAGGCT--------------------TTAGG---TTTTCCAGCTAGCTGCTCTGG-GCAGGGATGGG
i dasNov3.JH582591         C 0 I 12

a score=280341.000000
s hg38.chr6_GL000254v2_alt   874462 19 +   4827813 GGTTATATCTGGTTTCCCT
s panTro5.chr6             29837132 19 + 175400573 GGTTATATCTGGTTTCCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30071957 19 + 173848474 GGTTATATCTGGTTTCCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5878240 19 +   6154872 GGTTATATCTGGTTTCCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74587067 19 + 122973662 GGTTATATCTGGTTTCCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30068298 19 + 172585720 GGTTATATCTGGTTTCCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29731142 19 - 170955103 GGTTATATCTGGTTTCCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2776561 19 -   2996164 GGTTATATCTGGTTTCCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     530189 19 +    766320 GGTTATATCTGGTTTCCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28987031 19 -  71996105 GGTTATATCTGGTTTCCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     163184 19 +    290775 GGTTATATCTGGTTTCCCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2621621 19 -   3067355 GGTTATATCTGGTTTGCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30060797 19 + 171630274 GGTTATATCTGGTTTCCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           208984 19 -    242197 GGTTATATCTGGTTTCCCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     202362 19 -   1771730 GGTTATATGTGGTTTCCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     276724 19 -    457564 GGTTATATCTGGTTTCCCC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                90555 19 + 123392446 GGTTCTATCCAGTCACCCT
i micMur3.chr6             C 0 I 119
s proCoq1.NW_012152574v1     585366 19 +    730504 GGTTATATCCAGTTCCCCC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            97189 19 +  18854210 AGTTATGTCTAGTTTCCCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57919759 19 -  94987271 GGTCTTGCCTCGTGCCCCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26217492 19 +  26524999 ACCCACATTCGGGGTCCCC
i canFam3.chr35            C 0 I 6
e dasNov3.JH582591            25562 12 +    102524 I

a score=138437.000000
s hg38.chr6_GL000254v2_alt   874481 11 +   4827813 GTTTTCATTCT
s panTro5.chr6             29837151 11 + 175400573 GTTTTCATTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30071976 11 + 173848474 GTTTTCATTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5878259 11 +   6154872 GTTTTCATTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74587086 11 + 122973662 GTTTTCATTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30068317 11 + 172585720 GTTTTCATTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29731161 11 - 170955103 GTTTTCATTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2776580 11 -   2996164 GTTTTCATTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     530208 11 +    766320 GTTTTCATTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28987050 11 -  71996105 GTTTTCATTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     163203 11 +    290775 GTTTTCATTCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2621640 11 -   3067355 GTTTTCATTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30060816 11 + 171630274 ATTTTCATTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           209003 11 -    242197 ATTTTCACTCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     202381 11 -   1771730 ATTTTCATTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     276743 11 -    457564 ATTTTCATTCT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     585385 11 +    730504 TTTTTCATTCT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            97208 11 +  18854210 TTTTTCATTCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57919778  8 -  94987271 ---TACGTTTC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26217517 11 +  26524999 GTGTCAGTAAT
i canFam3.chr35            I 6 C 0
e micMur3.chr6                90574 119 + 123392446 I
e dasNov3.JH582591            25562 12 +    102524 I

a score=1310296.000000
s hg38.chr6_GL000254v2_alt   874492 105 +   4827813 CA----------ACA-AGTCAGAATGAAAAACTCCATGATACATGGCCATGGGAGTTACACAGGTTTTATTCTCAT-CC-----TGTCC-------AGGAA-----------CATG--ATCAGTA-TCTCAGAG---------AGGCAGACA
s panTro5.chr6             29837162 105 + 175400573 CA----------ACA-AGTCAGAATGAAAAACTCCATGATACATGGCCATGGGAGTTACACAGGTTTTATTCTCAT-CC-----TGTCC-------AGGAA-----------CATG--ATCAGTA-TCTCAGAG---------AGGCAGACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30071987 105 + 173848474 CA----------ACA-AGTCAGAATGAAAAACTCCATGATACATGGCCATGGGAGTTACACAGGTTTTATTCTCAT-CC-----TGTCC-------AGGAA-----------CATG--ATCAGTA-TCTCAGAG---------AGGCAGACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5878270 105 +   6154872 CA----------ACA-AGTCAGAATGAAAAACTCCATGATACATGGCCATGGGAGTTACACAGGTTTTATTCTCAT-CC-----TGTCC-------AGGAA-----------CATG--ATCAGTA-TCTCAGAG---------AGGCAGACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74587097 105 + 122973662 CA----------ACA-AGTCAGAATGAAAAACTCCATGATACATGGCCATGGGAGTTACACAGGTTTCATTCTCAT-CC-----TGTCC-------AGGAA-----------CACG--ATCAGTA-TCTCAGAG---------AGGCAGACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30068328 105 + 172585720 TA----------ACA-AGTCAGAATGAAAAACTCCATGATACATGGCTATGCGAGTTACACAGGTTTCATTCTCAT-CC-----TGTCC-------AGGAA-----------CATG--ATCAGTA-TCTCAGAG---------AGGCAGACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29731172 105 - 170955103 TA----------ACA-AGTCAGAATGAAAAACTCCATGATACATGGCTATGCGAGTTACACAGGTTTCATTCTCAT-CC-----TGTCC-------AGGAA-----------CATG--ATCAGTA-TCTCAGAG---------AGGCAGACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2776591 105 -   2996164 TA----------ACA-AGTCAGAATGAAAAACTCCATGATACATGGCTATGCGAGTTACACAGGTTTCATTCTCAT-CC-----TGTCC-------AGGAA-----------CATG--ATCAGTA-TCTCAGAG---------AGGCAGACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     530219 105 +    766320 TA----------ACA-AGTCAGAATGAAAAACTCCATGATACATGGCCAGGCGAGTTACACAGGTTTCATTCTCAT-CC-----TGTCC-------AGGAA-----------CATG--ATCAGTA-TTTCAGAG---------AGGCAGACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28987061 105 -  71996105 TA----------ACA-AGTCAGAATGAAAAACTCCATGATACATGGCCATGCGAGTTACACAGGTTTCATTCTCAT-CC-----TGTCC-------AGCAA-----------CATG--ATCAGTA-TCTCAGAG---------AGGCAGACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     163214 105 +    290775 TA----------ACA-AGTCAGAATGAAAAACTCCATGATACATGGCCAGGCGAGTTACACAGGTTTCATTCTCAT-CC-----TGTCC-------AGGAA-----------CATG--ATCAGTA-TTTCAGAG---------AGGCAGACA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2621651 105 -   3067355 TA----------ACA-AGTCAGAATGAACAACTCCACGATACATGGCCATGCGAGTTACACAGGTTTCATTCTCAT-CC-----TGTCC-------AGGAA-----------CATG--ATCAGTA-TCTCAGAG---------AGGCAGACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30060827 104 + 171630274 CA----------ACA-AGTCAGAATGAAAAACT-CATGATACGTGGCCATGGGAGTTATACAGATTTCATTCTCAT-CC-----TGTCC-------AGGAA-----------CATG--ATCAGTA-TCTCGGAG---------AGGCAGACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           209014 104 -    242197 CA----------ATA-AGTCAGAATGAAAAACT-CATGATACGTGGCCATGGGAGCTATACAGGTTTCATTCCCAT-CC-----TGTCC-------AGGAA-----------CATG--ATCAGTA-TCTCGGAG---------AGGCAGACA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     202392 104 -   1771730 CA----------ATA-AGTCAGAATGAAAAACT-CATGATACTTGGCCATGGGACTTATACAGGTTTCATTCTCAT-CC-----TGTCC-------AGGAA-----------CATG--ATCAGTA-TCTCGGAG---------AGGCAGACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     276754 104 -    457564 CA----------GTA-AGTCAGAATGAAAAACT-CATGATACGTGGCCATGGGAGTTATACAGGTTTCATTCTTAT-CC-----TGTCC-------AGGAA-----------CACA--ATCAGTA-TCTCGGAG---------AGGCAGACA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     585396 106 +    730504 CA----------GTTAAGTCGGAATGAAAACTTCCATGATACGTGGCATTGGGAGTTACACAGGTTTCATTCCCAC-CC-----CCTCA-------AGGAG-----------CACA--GTCATTA-TGTTGGAC---------AGGCAGACA
i proCoq1.NW_012152574v1   C 0 I 5
s otoGar3.GL873550            97219 107 +  18854210 CA----------ATC-AGTCAGAATGAAAACCTCCATTAAACATAGCCTGAGGAGTCACATAGGTTTTATTCTTACTCC-----CCTCA-------AGGAC-----------TGTA--GTCATTATTTTTAGAC---------AGGCAGAAA
i otoGar3.GL873550         C 0 I 5
s mm10.chr17               57919786  90 -  94987271 TG----------GTG-AGTCATCACACCACTCTCTATGACATGTGGCCTTGAGAGTCACA--------------AT-CT-------TCA-------GAGAG-----------TATGGAGTCAGTA-TTT-GGAG---------AGTCAGCCA
i mm10.chr17               C 0 I 5
s canFam3.chr35            26217528 111 +  26524999 CACCGGGAGAGCGTA-AGTCAGAGTGCAAACCTC--TGCTCCCAGACC-CAGGACTCACACAGCTCTGACCTCCGT-CC---------------------------------CATG--CTCACTG-TCCTGGGGTGCGGGGGCAGGCAGACA
i canFam3.chr35            C 0 I 5
s dasNov3.JH582591            25574 125 +    102524 CA----------GTG-GGTCAGAAGGAAGAGC--CACGGCACACAGCC-TGAGGGCCACGCGGGTTTCATTCTCAC-CCCCTTCTGTCCTTTTGGGAGGAACTCCGAGAGGGCGTG--GTCATTA-CCTCAGCA---------AGGCAGACA
i dasNov3.JH582591         I 12 C 0
e micMur3.chr6                90574 119 + 123392446 I

a score=4097430.000000
s hg38.chr6_GL000254v2_alt   874597 204 +   4827813 ----AGGAAAACGTCAGAAGAGAAACTTACCGGACATGTGAGTTGTAGATGTTAAAGGACAGACAGACAACAGCTAGGACAATGCCCAGGCTGGAGAGAACTGAGACGGAGATAAAGAGTTTCTGTGACAGGAAGCGGAATGTCTTGATGACCAGGGTCTGGTCAGCTGGGGGGGACCCTCCTGCATGGCACAGGGGAGGAAGAGGGG
s panTro5.chr6             29837267 204 + 175400573 ----AGGAAAACGTCAGAAGAGAAACTTACCGGACATGTGAGTTGTAGATGTTAAAGGACAGACAGACAACAGCTAGGACAATGCCCAGGCTGGAGAGAACCGAGACGGAGATAAAGAGTTTCTGTGACAGGAAGCGGAATGTCTTGATGACCAGGGTCTGGTCAGCTGGGGGGGACCCTCCTGCATGGCACAGgggaggaagagggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30072092 204 + 173848474 ----AGGAAAACGTCAGAAGAGAAACTTACCGGACATGTGAGTTGTAGATGTTAAAGGACAGACAGACAACAGCTAGGACAATGCCCAGGCTGGAGAGAACCGAGACGGAGATAAAGAGTTTCTGTGACAGGAAGCGGAATGTCTTGATGACCAGGGTCTGGTCAGCTGGGGGGGACCCTCCTGCATGGCACAGgggaggaagagggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5878375 203 +   6154872 ----AGGAAAACGTCAGAAGAGAAACTTACCGGACATGTGAGTTGTAGATGTTAAAGGACAGACAGACAACAGCTAGGACAATGCCCAGGCTGGAGAGAACCGAGACGGAGATAAAGAGTTTCTGTGACAGGAAGCGGAATGTCTTGATGACCAGGGTCTGGTCAGCT-GGGGGGACCCTCCTGCATGGCACAGGGGAGGAAGAGGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74587202 204 + 122973662 ----AGGAAAATGTCAGAAGAGAAACTTACCGGACATGTGAGTTGTAGATGTTAAAGGACAGACAGACAACAGCTAGGACAATGCCCAGGCTGGAGAGAACGGAGACGGAGATAAAGAGTTTCTGTGACAAGAAGCGGAATGTCTTGATGACCAGGGTCTGGTCAGCTGGGGGGGACCCTCCTGCATGGCACAGGGGAGGAAGAGGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30068433 204 + 172585720 ----AGGAAAACGTCAGAAGAGAAACTTACCGGACATGTGAGTTGTAGATGTTAAAGGACAGACAGACAACAGCTAGGACAATGCCCAGGCTGGAGAGAACCGAGACGGAGATAAAGAGTTTCTGTGACAGGAAGCGGAATGTCTTGATGACCAGGGTCTGGTCAGCTGGGGGGGACCCTCCTGCATGGCACAGgggaggaggagggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29731277 204 - 170955103 ----AGGAAAACGTCAGAAGAGAAACTTACCGGACATGTGAGTTGTAGATGTTAAAGGACAGACAGACAACAGCTAGGACAATGCCCAGGCTGGAGAGAACCGAGACGGAGATAAAGAGTTTCTGTGACAGGAAGCGGAATGTCTTGATGACCAGGGTCTGGTCAGCTGGGGGGGACCCTCCTGCATGGCACAGgggaggaggagggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2776696 204 -   2996164 ----AGGAAAACGTCAGAAGAGAAACTTACCGGACATGTGAGTTGTAGATGTTAAAGGACAGACAGACAACAGCTAGGACAATGCCCAGGCTGGAGAGAACCGAGACGGAGATAAAGAGTTTCTGTGACAGGAAGCGGAATGTCTTGATGACCAGGGTCTGGTCAGCTGGGGGGGACCCTCCTGCATGGCACAGgggaggaggagggg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     530324 204 +    766320 ----AGGAAAACGTCAGAAGAGAAACTTACCGGACATGTGAGTTGTAGATGTTAAAGGACAGACAGACAACAGCTAGGACAATGCCCAGGCTGGAGAGAACCGAGACGGAGATAAAGAGTTTCTGTGACAGGAAGCGGAATGTCTTGATGACCAGGGTCTGGTCAGCTGGGGGGGACCCTCCTGCATGGCACAGgggaggaggagggg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28987166 204 -  71996105 ----AGGAAAACGTCAGAAGAGAAACTTACCGGACATGTGAGTTGTAGATGTTAAAGGACAGACAGACAACAGCTAGGACAATGCCCAGGCTGGAGAGAACCGAGACGGAGATAAAGAGTTTCTGTGACAGGAAGCGGAATGTCTTGATGACCAGGGTCTGGTCAGCTGGGGGGGACCCTCCTGCATGGCACAGgggaggaggagggg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     163319 204 +    290775 ----AGGAAAACGTCAGAAGAGAAACTTACCGGACATGTGAGTTGTAGATGTTAAAGGACAGACAGACAACAGCTAGGACAATGCCCAGGCTGGAGAGAACCGAGACGGAGATAAAGAGTTTCTGTGACAGGAAGCGGAATGTCTTGATGACCAGGGTCTGGTCAGCTGGGGGGGACCCTCCTGCATGGCACAGgggaggaggagggg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2621756 204 -   3067355 ----AGGAAAACATCAGAAGAGAAACTTACCGGACATGTGAGTTGTAGATGTTAAAGGACAGACAGACAACAGCTAGGACAATGCCCAGGCTGGAGAGAACCGAGACGGAGATAAAGAGTTTCTGTGACAGGAAGCGGAATGTCTTGATGACCAGGGTCTGGTCAGCTGGGGGGGACCCTCCTGCATGGCACAGgggaggaggagggg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30060931 204 + 171630274 ----AGGAAAATGTCAGAAGAGAAACTTACCGGACATGTGAGTTGTAGATGTTAAAGGACAGACAGACAACAGCTAGGACAATGCCCAGGCTGGAGAGAACCGAGACGGAGATAAAGAGTTTCTGTGACAGGAAGCGGAATGTCTTGATGACCAGGGTCTGGTCAGCTGGGGGAGACCCTCCTGCATGGCACAGGGGAGAAAGAGGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           209118 204 -    242197 ----AGGAAAATGTCAGAAGAGACACTTACCGGACATGTGAGTTGTAGATGTTAAAGGACAGACAGACAACAGCTAGGACAATGCCCAGGCTGGAGAGAACTGAGACGGAGATAAAGAGTTTCTGTGACAGGAAGCGGAATGTCTTGATGACCAGGGTCTGGTCAGCTGGGGGGGACCCTCCTGCATGGCACAGGGGAAAAAGAGGGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     202496 204 -   1771730 ----AGGAAAATGTCAGAAGAGAAACTTACCGGACATGTGAGTTGTAGATGTTAAAGGACAGACAGACAACAGCTAGGACAATGCCCAGGCTGGAGAGAACGGAGACGGAGATAAAGAGTTTCTGTGACAGGAAGCGGAATGTCTTGATGACCAGGGTCTGGTCAGCTGGGGGGGACCCTCCTGCATGGCACAGGGGAGAAAGAGGgg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     276858 204 -    457564 ----AGGAAAATGTCAGAAGAGAAACTTACCGGACATGTGAGTTGTAGATGTTAAAGGACAGACAGACAACAGCTAGGACAATGCCCAGGCTGGAGAGAACCGAGACGGAGATAAAGAGTTTCTGTGACAGGAAGCGGAATGTCTTGATGACCAGGGTCTGGTCAGCTGGGGGGGACCCTCCTGCATGGCACAGGGGAGAAAGAGGgg
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                90693 202 + 123392446 ----AGGAAAA-GTC-GAAGAGAAACTTACCGGACATGAGAGTTGTAGATGTTAAAGGACAGACAGACGACAGCGAGGACAATGCCCAGGCTGGAGAGAACCGAGACGGAGATAAAGAGTTTCTGGGACAGGAAGCGGAATGTCTTGATGACTAGGGTCTGGTCAGCTGGGGGGGACCCTCCTACATGGCACAGGGGACGATGAGGGG
i micMur3.chr6             I 119 C 0
s proCoq1.NW_012152574v1     585507 203 +    730504 ----AGGAAAA-GTCAGAAGAGAAACTTACCGGACATGTGAGTTGTAGATGTTAAAGGACAGACAGACAACAGCTAGGACAATGCCCAGGCTGGAGAGAACCGAGACGGAGATAAAGAGTTTCTGTGACAGGAAGCGGAATGTCTTGATGACCAGGGTCTGGTCAGCTGGGGGGGACCCTCCTGCATAGCACAGGGGAGGATGAGGGG
i proCoq1.NW_012152574v1   I 5 C 0
s otoGar3.GL873550            97331 203 +  18854210 ----AGGAAAATGTCAGAAGAGAAACTTACCGGACATGTGAGTTGTAGATGTTAAAGGACAGACAGACAACAGCTAGGACAATGCCCAGACTGGAGAGAACCGAAACGGAGATAAAGAGTTTCTGTGACAGGAAGCGGAATGTCTTGATGACCAGGGTCTGGTCAGCTGGGGGGGACCCTCCTGTATGGCACAGGGGAAGAAGA-GGG
i otoGar3.GL873550         I 5 C 0
s mm10.chr17               57919881 204 -  94987271 ----GGGATCAAGTCAGAAGAGAAACTTACCGAACGTGGGAGTTGTAGATGTTAAAGGACAGACAGACAACAGCAAGAACAATGCCCAGGCTGGAGAGAACTGAGACGGAGATAAAGAGTTTCTGTGACAGGAAACGGAATGTCTTGATGACCAAGGTCTGGTCGGCTGGGGGAGACCCTCCTGCATGGCACAGGGGAGGAGGGGGGG
i mm10.chr17               I 5 C 0
s canFam3.chr35            26217644 204 +  26524999 ----AGGAAAGTGTCAGACAGGAAACTTACCGGACATGAGAGTTGTAGATGTTAAAGGACAGACAGACCACAGCCAGGACAATGCCCAGGCTGGAGAGGACAGAGACTGAAATGAAGAGCTTCTGTGACATGAAGCGAAATGTCTTGATGACCAGGGTCTGGTCGGCCGGGGGGGCTCCTCCTGCATGACATTAAGGGTAAGGGGCGG
i canFam3.chr35            I 5 I 482
s dasNov3.JH582591            25699 207 +    102524 AGGCTGGAAGAGCACCCCAGAGCGGCTTACCGGACATGGGCATTGTAGATGTTGAAGGACAGACAGACAACAGCTAGGACAATGCCCAGGCTGGAGAGGACTGAGACGGAGATGAAGAGCTTCTGGGACAGGAAGCGGAAGGTCTTGATGACCAGGGTCTGGTCGGCTGGTGGGGACCCCCCTGTAGGGCACAGGGCAGGATGCAGG-
i dasNov3.JH582591         C 0 C 0

a score=310806.000000
s hg38.chr6_GL000254v2_alt   874801 22 +   4827813 AAGGGAAAAGAGAAGGGAAGGA
s panTro5.chr6             29837471 22 + 175400573 aagggaaaagagaagggaagga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30072296 22 + 173848474 aagggaaaagagaagggaagga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5878578 22 +   6154872 AAGGGAAAAGAGAAGGGAAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74587406 22 + 122973662 AAGGGAAAAGAGAAGGGAAGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30068637 22 + 172585720 aagggaaaagagaagggaaggA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29731481 22 - 170955103 aagggaaaagagaagggaaggA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2776900 22 -   2996164 aagggaaaagagaagggaaggA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     530528 22 +    766320 aagggaaaagagaagggaaggA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28987370 22 -  71996105 aagggaaaagagaagggaaggA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     163523 22 +    290775 aagggaaaagagaagggaaggA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2621960 22 -   3067355 aagggaaaagagaagggaaggA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30061135 22 + 171630274 AAGGGAAAAAAGAAAGGAAGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           209322 22 -    242197 AAGGGAAAAAAGAAAGGAAGGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     202700 22 -   1771730 aagggaataaagaaaggaagga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     277062 22 -    457564 aagggaaaaaagaaaggaagga
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                90895 17 + 123392446 AGGGGACAAGAGA-----AAGA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     585710 21 +    730504 AGGGGACAAGAGAAAGG-AAGA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            97534 22 +  18854210 AGGGGACAAGGGAAAGGAAGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57920085 16 -  94987271 G------AAGAAAAAGGAGGGA
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            25906 21 +    102524 -AGGTGAAGGAAGAGGGAAAGA
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26217848 482 +  26524999 I

a score=2240375.000000
s hg38.chr6_GL000254v2_alt   874823 170 +   4827813 GGACAA------AGGAATGAAGAC-GGGATAGGAGAAAAGGGCAAAGAACTAGATTGCTGATGGAC--ATTCAGTCATTG-GCTGGGGACATGA-GGCCCTAACTGCACTGGACAGAGGTTACTGCAGGCAGAATG-CTCA--GTGCCACTGGGGCCGTTAGGAAGCAACCAGAAATGAGATGA
s panTro5.chr6             29837493 170 + 175400573 ggacaa------aggaatgaagac-aggataggaGAAAAGGGCAAAGAACTAGATTGCTGATGGAC--ATTCAGTCATTG-GCTGGGGACATGA-GGCCCTAACTGCACTGGACAGAGGTTACTGCAGGCAGAATG-CTCA--GTGCCACTGGGGCCGTTAGGAAGCAACCAGAAATGAGATGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30072318 170 + 173848474 ggacaa------aggaatgaagac-aggataggaGAAAAGGGCAAAGAACTAGATTGCTGATGGAC--ATTCAGTCATTG-GCTGGGGACATGA-GGCCCTAACTGCACTGGACAGAGGTTACTGCAGGCAGAATG-CTCA--GTGCCACTGGGGCCGTTAGGAAGCAACCAGAAATGAGATGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5878600 170 +   6154872 GGACAA------AGGAATGAAGAC-GGGATAGGAGAAAAGGGCAAAGAACTAGATTGCTGATGGAC--ATTCAGTCATTG-GCTGGGGACACGA-GGCCCTAACTGCACTGGACAGAGGTTACTGCAGGCAGAATG-CTCA--GTGCCACTGCGGCCGTTAGGAAGCGACCAGAAATGAGATGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74587428 170 + 122973662 GGACAA------AGGAATGAAGAC-GGGATAGGAGAAAAGGGCAAAGAACTAGATTGCTGATGGAC--ATTCAGTCATTG-GCTGGGGACATGA-GGCCCTAACTGTACTGAACAGAGGTTACTGCAGGCAGAATG-CTCA--GCGCCACTGGGGCCGTTAGGAAGCAACCAGAAATGAGATGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30068659 169 + 172585720 GGACAA------AGGAATGAAGAC-GGGATAGGAGAAAAGGGCAAAGAACTAGATTGCTGACAGGC---TTCAGTCATTG-GCTGGGGACATGA-GGCCCTAACTGCACTGAACAGAGGTTACCGCAGGCAGAATG-CTCA--GTGCCACTGGGGCCGTTAGGAAGCAACCAGAAACGAGATGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29731503 169 - 170955103 GGACAA------AGGAATGAAGAC-GGGATAGGAGAAAAGGGCAAAGAACTAGATTGCTGACAGGC---TTCAGTCATTG-GCTGGGGACATGA-GGCCCTAACTGCACTGAACAGAGGTTACCGCAGGCAGAATG-CTCA--GTGCCACTGGGGCCGTTAGGAAGCAACCAGAAACGAGATGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2776922 169 -   2996164 GGACAA------AGGAATGAAGAC-GGGATAGGAGAAAAGGGCAAAGAACTAGATTGCTGACAGGC---TTCAGTCATTG-GCTGGGGACATGA-GGCCCTAACTGCACTGAACAGAGGTTACCGCAGGCAGAATG-CTCA--GTGCCACTGGGGCCGTTAGGAAGCAACCAGAAACGAGATGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     530550 169 +    766320 GGACAA------AGGAATGAAGAC-GGGATAGGAGAAAAGGGCAAAGAACTAGACTGCTGACAGAC---TTTAGTCATTG-GCTGGGGACATGA-GGCCCTAACTGCACTGAACAGAGGTTACCGCAGGCAGAATG-CTCA--GTGCCACTGGGGCTGTTAGGAAGCAACCAGAAACGAGATGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28987392 169 -  71996105 GGACAA------AGGAATGAAGAC-GGGATAGGAGAAAAGGGCAAAGAACTAGATTGCTGACAGAC---TTCAGTCATTG-GCTGGGGACATGA-GGCCCTAACTGCACTGAACAGAGGTTACCGCAGGCAGAATG-CTCA--GTGCCACTGGGGCCGTTAGGAAGCAACCAGAAACGAGATGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     163545 169 +    290775 GGACAA------AGGAATGAAGAC-GGGATAGGAGAAAAGGGCAAAGAACTAGATTGCTGACAGAC---TTTAGTCATTG-GCTGGGGACATGA-GGCCCTAACTGCACTGAACAGAGGTTACCGCAGGCAGAATG-CTCA--GTGCCACTGGGGCCGTTAGGAAGCAACCAGAAACGAGATGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2621982 169 -   3067355 GGACAA------AGGAATGAAGAC-GGGATAGGAGAAAAGGGCAAAGAACTAGATTGCTGACAGAC---TTCAGTCATTG-GCTGGGGACATGA-GGCCCTAACTGCACTGAACAGAGGTTACTGCAGGCAGAATG-CTCA--GTGCCACTGGGGCCGTTAGGAAGCAACCAGAAACGAGATGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30061157 171 + 171630274 GGACAA------AGGAATGAAGACCGGGACAGGAGAAAAGGGCAAAGAACTAGATTGCTGACAGAC--ATTCAGTCTTTG-GCTGGGGCTATGA-GACCCTAACTGCACTGAACAGAGGTGACTGCAGGCAGAATG-CTCA--GTGCCACTGGGGCCTTCAGGAAGTAAACAGAAATGAGATGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           209344 161 -    242197 GGACAA------AGAAATGAAGACTGGGATAGGAGAAAAGGGCAAAGAACTAGATTGCTGATCGAC--ATTCAGTCTTTG-GCTGGGGCTATGA-GACCCT----------AACAGAGGTGACTGCAGGCAGAATG-CTCA--GTGCCACTGGGGCCCTCAGGAAGCAAACAGAAATGAGATGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     202722 171 -   1771730 ggacaa------aggaatgaagACCGGGATAGGAGAAAAGGGCAAAGAACTAGATTTCTGATGGAC--ATTCAGTCTTTG-GCTGGGGCTATGA-GACCCTAACTGCACTGAACAGAGGTGACTGCAGGCAGAATG-CTCA--GTGCCACTGGGACCCTCAGGAAGCAAACAGAAATGAGATAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     277084 171 -    457564 ggacaa------aggaatgaagACCGGGATAGGAGAAAAGGGTAAAGAACTAGATTGCTGACAGAC--ATTCAGTCTTTG-GCTGGGGCTATGA-GACCCTAACTGCACTGAACAGAGGTGACTGCAGGCAGAATG-CTCA--GTGCCACTGGGGCCCTCAGGAAGCAAACAGAAATGAGATGA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                90912 163 + 123392446 GGACAAA-----AGGAATGAAGAT-GGTGTAGGAGAAAGGGGCAAAGGCCTAGGCTGCTGATGGGC---TTCCGTGCTTG-GCTGCGGGCACGG-GGCCCTCACTGCACTGAACTGGGGCTGCAGGTGGCAG-----CTTG--CTGACACTGGG--CCTTAGGAAG-AATCAGAAATGAGATGA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     585731 170 +    730504 GGACAAAGGAGGAGGAATGAAGAT-GGGATGGGAGAAAGAGGCGAAGGACTAGGCTGCTGATGGGC---TTCCATCCTTG-GCTGAGGACAC-G-GGCCCCAACTGCACTGAACAGGGGCTGCAGGTGGAAG-----CTCG--CAGGCGCCAGGGCCCTCAGGAAGCAATCAAAAATGAGATGA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            97556 170 +  18854210 GGACAA------AGGAATGAAGGT-GGCATAGGAGAAAAGGGCAAAGGACTAGGTTGCTGACAGGC---ATTC-TGTCTG-GCTCAGGACAAGGTGGCCCTAACTGTACCCAACAGGGGTTGCTGTGGGTAGAAAGCTCTG--TTGACACTCAGGCCCTTAGGAGGTGATCAGAAATGAGATGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57920101 166 -  94987271 GGACG-------AGGCATCAAGGC-AAGATAGGAGAAAGTGGCGAGAGACAAG-CTGCTGAGGGAGGGAGTTGGT-GTGG-GCTGAAGACATGA-GGCCCTCAACACACTG---AGGGGCTGCAGTGGGCAGATTG-CTGA--AGGACACTGAGGACCTTGAGAATCTCGTAGAAATAAGACAG
i mm10.chr17               C 0 I 331
s canFam3.chr35            26218330 147 +  26524999 GGACAA------GGAAATGAAGA--GGCA---GAGAAAGGGGCAAGGACAC---CTGCCTCCAGCC----------------CTGAGGACATGG-GGCCCTGGCTGCTCTGAATTGGGGCCAGGACAGA-GGAATG-CTCC--CTGCAGCTTGGGATCTCAGGAAGCAGT--GGAAGGAGAGGA
i canFam3.chr35            I 482 C 0
s dasNov3.JH582591            25927 150 +    102524 --------------GAACAGAGAT-GGGC--AGAGGACTCAGCGAGTGA-TGGGGAGCCGACGCGT--ATCTGGCTCTTGCTCTGCAGACA-GG-CGCCCTAACTGCCCTCAAGA-AGGCTGTAGTGGCCGGAGCA-CCCATGATGCC-----GGCCTTTGTGAAGCAATCAAAAGGGT-----
i dasNov3.JH582591         C 0 C 0

a score=874969.000000
s hg38.chr6_GL000254v2_alt   874993 67 +   4827813 GAAGATG-GAGTGAATGGTCTATCCATAGGTTGGGAAATGCTG-AGGCATGTCCCCAAAgttgt--agt---ct-----
s panTro5.chr6             29837663 67 + 175400573 GAAGATG-GAGTGAATGGTCTATCCATAGGTTGGGAAATGCTG-AGGCATGTCACCAAAgttgt--agt---ct-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30072488 67 + 173848474 GAAGATG-GAGTGAATGGTCTATCCATAGGTTGGGAAATGCTG-AGGCATGTCACCAAAgttgt--agt---ct-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5878770 67 +   6154872 GAAGATG-GAGTGAATGGTCTATCCATAGGTTGGGAAATGCTG-AGGCATGTCACCAAAgttgt--agt---ct-----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74587598 67 + 122973662 GAAGATG-GAGTGAATGGTCTATCCATAGGTTGGGAAATGCTG-AGGCATGTCACCAAAgttgt--agt---ct-----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30068828 67 + 172585720 GAAGATG-GAGTGAATGGTCTATCCATAGGTTGGGAAATGCTG-AGGCATGTCACCAAAgttgt--agt---ct-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29731672 67 - 170955103 GAAGATG-GAGTGAATGGTCTATCCATAGGTTGGGAAATGCTG-AGGCATGTCACCAAAgttgt--agt---ct-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777091 67 -   2996164 GAAGATG-GAGTGAATGGTCTATCCATAGGTTGGGAAATGCTG-AGGCATGTCACCAAAgttgt--agt---ct-----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     530719 67 +    766320 GAAGATG-GAGTGAATGGTCTATCCATAGGTTGGGAAATGCTG-AGGCATGTCACCAAAgttgt--agt---ct-----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28987561 67 -  71996105 GAAGATG-GAGTGAATGGTCTATCCATAGGTTGGGAAATGCTG-AGGCATGTCACCAAAgttgt--agt---ct-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     163714 67 +    290775 GAAGATG-GAGTGAATGGTCTGTCCATAGGTTGGGAAATGCTG-AGGCATGTCACCAAAgttgt--agt---ct-----
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2622151 67 -   3067355 GAAGATG-GAGTGAATGGTCTGTCCATAGGTTGGGAAATGCTG-AGGCATGTCACCAAAgttgt--agt---ct-----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30061328 68 + 171630274 GAAGATGTGAGTCCATGGTCTCTCCATAGCTTGGGAAATGCTG-AGGCATGTCACCAAAGTCGT--AGT---CT-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           209505 68 -    242197 GAAGATGTGAGTCAATGGTCTCTCCATAGCTTGGGAAATGCTG-AAGCATGTCACCAAAGTTGT--AGT---CT-----
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     202893 68 -   1771730 GAAGATGTGAGTTAATGGTCTCTCCAAAGCTTGGGAAATGCTG-AGGCATGTCACCAAAGTTGT--AGT---CT-----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     277255 68 -    457564 GAAGATGTGAGTCAATGGTCTCTCCATAGCTTGGGAAATGCTG-AGGCATGTCACCAAAGTTGT--AGT---CT-----
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                91075 70 + 123392446 GAGGCTG-GCGGGAACGCTCCGTCCAGAGGCTAGGAAATGATT-GGGCATGTCCCCAAAGTTGT--AGtctttt-----
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     585901 64 +    730504 GAGGCTG-GCGCGAACGCTCTGTCCAGAGGTTGGGATATGATTAGGGCATGTCCCCAAAGTTG---------TT-----
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            97726 69 +  18854210 GAAGATG-TATTGAAGGTTCTCTCCAGAGGTTGGGAAATGATT-AGGCATACCCCCAAAGTTGT--AGCCT-TT-----
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26218477 45 +  26524999 GAAAATG-GAG------------CTAGAGGCTAGGATATATTA-G----------CAAAGCTGG--AGT---CT-----
i canFam3.chr35            C 0 I 4
s dasNov3.JH582591            26077 71 +    102524 GAAAATG-GAGCAAGTGCCCTGCCCAGAGGT--GGAAGTGCTG-A-GTGTACCACCGAAGATGCAGAGC---CTTGTTG
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57920267 331 -  94987271 I

a score=923879.000000
s hg38.chr6_GL000254v2_alt   875060 67 +   4827813 ttgtt---tttgtttgttctttaagtttttCTGTCTTTCTTACAGCAAAGGAAAAT-GGGAGGAGAAAG-AA
s panTro5.chr6             29837730 67 + 175400573 ttgtt---tttgtttgttctttaagtttttCTGTCTTTCTTACAGCAAAGGAAAAT-GGGAGGAGAAAG-AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30072555 67 + 173848474 ttgtt---tttgtttgttctttaagtttttCTGTCTTTCTTACAGCAAAGGAAAAT-GGGAGGAGAAAG-AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5878837 66 +   6154872 ttgtt---tttgtttgttctttaagtttttCTGTC-TTCTTACAGCAAAGGAAAAT-GGGAGGAGAAAG-AA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74587665 67 + 122973662 ttgtt---tttgtttgttctttaagtttttCTGTCTTTCTTACAGCAAAGGAAAAT-GGGAGGAGAAAG-AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30068895 67 + 172585720 ttgtt---tttgtttgttctttaagtttttCTGTCTTTCTTACAGCAAAGGAAAAT-GGGAAGAGAAAG-AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29731739 67 - 170955103 ttgtt---tttgtttgttctttaagtttttCTGTCTTTCTTACAGCAAAGGAAAAT-GGGAAGAGAAAG-AA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777158 67 -   2996164 ttgtt---tttgtttgttctttaagtttttCTGTCTTTCTTACAGCAAAGGAAAAT-GGGAAGAGAAAG-AA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     530786 67 +    766320 ttgtt---tttgtttgttctttaagtttttCTGTCTTTCTTACAGCAAAGGAAAAT-GGTAAGAGAAAG-AA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28987628 67 -  71996105 ttgtt---tttgtttgttctttaagtttttCTGTCTTTCTTACAGCAAAGGAAAAT-GGGAAGAGAAAG-AA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     163781 67 +    290775 ttgtt---tttgtttgttctttaagtttttCTGTCTTTCTTACAGCAAAGGAAAAT-GGTAAGAGAAAG-AA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2622218 67 -   3067355 ttgtt---tttgtttgttctttaagtttttCTGTCTTTCTTACAGCAAAGGAAAAT-GGGAAGAGAAAG-AA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30061396 63 + 171630274 TTGTT---TTTGTTTG----TTAAGTTATTCTGTCTTCCTTATAGCAAAGGAAAAT-GGGAAGAAAAAG-AA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           209573 57 -    242197 TTGTT---T-----------TTAAGTTTTTCTGTCTTTCTTATAGCAAAGGAAAAT-GGGAAGAAAAAGAAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     202961 63 -   1771730 TTGTT---TTTGTTTA----TTAAGTTTTTCTGTCATTCTTATAGCAAAGGAAAAT-GGGAAGAAAAAG-AA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     277323 59 -    457564 TTGTT---TTTGT-------TTAAGTTTTTCTGTC-TTCTTATAGCAAAGGAAAAT-GGGAAGAAAAAG-AA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                91145 66 + 123392446 ttgtt---actgtttgttctttctgcttttctgtctttcttGCAGAAAAGGAAAAT--AGAGGAGAAAG-AA
i micMur3.chr6             C 0 I 139
s proCoq1.NW_012152574v1     585965 67 +    730504 TTGTT---ATTGTTTGttctttctgtttttctatctttcttGTGGGAAAGGAAAAT-CAGAGGAGAAAG-AA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            97795 71 +  18854210 TTATTTTAATTGTTTGTTCTTTCTGTTTTTCTGTCTTTCTTATGGAAAAGGAAAATGGGGAGGGGAAAG-AA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57920598 61 -  94987271 ctTTT---ATTGCTTGTTCTTGTTGTTTCTCTGCC----TTATGGCAATGGAAA---AGGAGGGAAAAG-AA
i mm10.chr17               I 331 C 0
s canFam3.chr35            26218526 62 +  26524999 CTGCT---AGTGTTTGTTCTGTA---TTTTCTGTCTTTTTCTCAGCAAAAGAAACA-GGAAGGGAAGAA---
i canFam3.chr35            I 4 C 0
s dasNov3.JH582591            26148 51 +    102524 TTGTG---ACTGTTTGTTC--------------TCTTTCTTTCAGCAAAGGGAAAG-GGAAGGGGAGAT---
i dasNov3.JH582591         C 0 C 0

a score=1621756.000000
s hg38.chr6_GL000254v2_alt   875127 151 +   4827813 GGGGATCATTAAAA----AA----TGTTATAAG-------GTTTCTTATAACCCAAA-TCA-AAGTTTT-AAAT------G--ACAATTATGGAATCATAAAGCTAAA-AAGGCCTTGAAGTATCTAGTGTGGACACCTATTCTTAAGACAAACAA---AA------------------------------------AAA-----GAAGGAAAGCTAATCTG
s panTro5.chr6             29837797 151 + 175400573 GGAGATCATTAAAA----AA----TGTTATAAG-------GTTTCTTATAACCCAAA-TCA-AAGTTTC-ACAT------G--ACAATTATGGAATCACAAAGCTAAA-AAGGCCTTGAAGTATCTAGTGTGGACACCTATTCTTAAGACAAACAA---AA------------------------------------AAA-----GAAGGAAAGCTAATCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30072622 151 + 173848474 GGAGATCATTAAAA----AA----TGTTATAAG-------GTTTCTTATAACCCAAA-TCA-AAGTTTC-ACAT------G--ACAATTATGGAATCATAAAGCTAAA-AAGGCCTTGAAGTATCTAGTGTGGACACCTATTCTTAAGACAAACAA---AA------------------------------------AAA-----GAAGGAAAGCTAATCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5878903 151 +   6154872 GGGGATCATTAAAA----AA----TGTTATAAG-------GTTTCTTATAACCCAAA-TCA-AAGTTTC-AAAT------G--ACAATTATGGAATCATAAAGCTAAA-AAGGCCTTGAAGTATCTAGTGTGGACACCTATTCTTAAGACAAACAA---AA------------------------------------AAA-----GAAGGAAAGCTAATCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74587732 147 + 122973662 GG-GATAATTTAAA----AA----TGTTATAAG-------GTCTCTTATAACCCAAA-TCA-AAGTTTC-AAAT------G--ACAATTATGGAATCATAAAGCTAAA-ATGGCCTTGAAGTATCTAGTGTGGACACCTAATCTTGAGACAAACAA---AA------------------------------------A--------AAGGAAAGCTAATCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30068962 152 + 172585720 GGGGATAACTAAAA----AA----TGTTATAAG-------GTCTCTTATAACCCAAA-TCA-AAGTTTC-GAAC------G--ACAATTATTGAATCATAAAGCTAAA-AAGGCCTTGAAGTATCTAGGGTGGACACCTAATCTTAAGACAAAAAA---AA------------------------------------AAA----AGAAGGAAAACTAATCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29731806 151 - 170955103 GGGGATAACTAAAA----AA----TGTTATAAG-------GTCTCTTATAACCCAAA-TCA-AAGTTTC-GAAC------G--ACAATTATTGAATCATAAAGCTAAA-AAGGCCTTGAAGTATCTAGGGTGGACACCTAATCTTAAGAC-AAAAA---AA------------------------------------AAA----AGAAGGAAAACTAATCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777225 152 -   2996164 GGGGATAACTAAAA----AA----TGTTATAAG-------GTCTCTTATAACCCAAA-TCA-AAGTTTC-GAAC------A--ACAATTATTGAATCATAAAGCTAAA-AAGGCCTTGAAGTATCTAGGGTGGACACCTAATCTTAAGACAAAAAA---AA------------------------------------AAA----AGAAGGAAAACTAATCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     530853 147 +    766320 GGGGATAACTAAAA----AA----TGTTATAAG-------GTCTCTTATAACCCAAA-TCA-AAGTTTC-AAAC------G--ACAATTATTGAATCATAAAGCTAAA-AAGGCCTTGAAGTATCTAGTGTGGACACCTAATCTTAAGAC-----A---AA------------------------------------AAA----AAAAGGAAAACTAATCTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28987695 156 -  71996105 GGGGATAACTAAAA----AA----TGTTATAAG-------GTCTCTTATAACCCAAA-TCA-AAGTTTC-AAAC------G--ACAATTATTGAATCATAAAGCTAAA-AAGGCCTTGAAGTATCTAGGGTGGACACCTAATCTTAAGACaaaaaa---aa------------------------------------aaaaaaaagaaggaaaaCTAATCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     163848 150 +    290775 GGGGATAACTAAAA----AA----TGTTATAAG-------GTCTCTTATAACCCAAA-TCA-AAGTTTC-AAAC------G--ACAATTATTGAATCATAAAGCTAAA-AAGGCCTTGAAGTATCTAGTGTGGACACCTAATCTTAAGACAAAAAA---AA------------------------------------AAA------AAGGAAAACTAATCTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2622285 154 -   3067355 GGGGATAACTAAAA----AA----TGTTATAAA-------GTCTCTTATAACCCAAA-TCA-AAGTTTC-AAAT------G--ACAATTATTGAATCATAAAGCTAAA-AAGGCCTTGAAGTATCTAGTGTGGACACCTAATCTTAAGACAAAAAA---AA------------------------------------AAA--AAAGAAGGAAAACTAATCTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30061459 140 + 171630274 GGGGATAACTGAAA----AA----TGTTATAAG-------GTCTCTTATAACCCAAA-TCA-AAGTTTC-AAAT------G--ACAATTATGGAATCATAAAGCTAAA-GAGGCCTTGAAGTATCTAGTGTGGACACCTAATCTTAAGG------A---AA------------------------------------AAA----------AAAACTAATCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           209630 145 -    242197 AGGGATAACCAAAA----AA----TGTTATAAGATCTCTTATCTCTTATAACCCAGA-TCA-AAGTTTC-AAAT------G--ACAATTATGGAATCATAAAACTAAA-GAGGCCTTGAAGTATCTAGGGTGGACACTTAATCTTAAG-----------AA------------------------------------AAA----------AAAACTAATCTG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     203024 140 -   1771730 GGAGATAACTGATA----AA----TGTTGTAAG-------GTCTCTTAGAACCCAAA-TCA-AAGTTTC-AAAT------A--ACAATTATGGAATCATAAAGCTAAA-GGGGCCTTGAAGTATCTAGTGTGGACACCTAATCTAAAGA------A---AA------------------------------------AAA----------AAAACTAATCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     277382 138 -    457564 GGGAATAACTGAAA----AA----TGTTGTAAG-------GTTTCTTATAACCCAAA-TCA-AACTTTC-AAAT------G--ACAATTATGAAATCATAAAGCTAAA-GGGGCCTTGAAGTATCTAGTGTGGGCACCTAATCTTAAG-----------AA------------------------------------AAA----------AACACTAATCTG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     586032 161 +    730504 AGAGACAGCTGAGA----AATAACTTTTATGAG-------GTCTCTTAAAACCCGAA-TCAAAGGCTTC-AAAA------AAGACAATCACAGAATCATAAAGCCAAA-GGGGCCTCAAAGTCTCTAGTGTGGCCTCCTAACCCTACACAAAAACACCCAA------------------------------------AAA-----CCAAAAACGCTGATCTG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            97866 194 +  18854210 AGAGACAGCTGAGA----AATAA-TTTTATGAG-------ATCTCTTATAACTCAAA-TCAGAAGCTTC-AGAA------A--ACAATTATAGAATCATAAAGCTAAAGGGGGCCTCAAAATA-CTTGTATGGCCTCCTAACCTTAGGTAAGAAAACCCAAAAAATAAAAAACACTACTCTGAAAaaacaaacaaacaaa-----caaaaaaacCTAATCTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57920659 126 -  94987271 GGGAACAGGTGAAAT---AA----CCTTATAAG-------GTCATCAATCACTCCAC-AAA-ACGGTGC-AAAA------G--ACAATTACAGAAGCAGAAAGCCAAA-AG--------AATATCCAGCGTGGTCTTCTAGCCCCTAGCAAAAGAC---AG------------------------------------AA-----------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26218588 141 +  26524999 GGGGATGACTCAGAGGTAAA----GTTCATGAA-------ATCTCTCAGAACTCAAA-TCAAAAGCTGCAAAAA------G--ACAGTCGTGGAATCATAAAGCTAAA-GAG--TTCAAAGCATCCAGCCCAGTCTCCTAACCTTAAG-----------GA------------------------------------AAA-----------AATCTGATCTG
i canFam3.chr35            C 0 I 2
s dasNov3.JH582591            26199 133 +    102524 GGGGAGAGCTAAGG----AA----T---------------TCACTTTCTACCCCAGATTTA-AAGCTGC-AAACAATATGG--ACAATTACAGAATTACCACGC-GAA-AGGGCCTCAGAGTATCTTAGGC--------------AAGAAAAAAGA---AA------------------------------------AAA-------GGAAAATCTAATCTG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                91211 139 + 123392446 I

a score=1612449.000000
s hg38.chr6_GL000254v2_alt   875278 113 +   4827813 AAATTTTAATCCTGGCAGGGTAATATT-CCCAAATATGTTTTCCAGTTATTATTAGGGGGAAGTTCAAATTTGTC--A--GAGTTC-------------AC-CAAAAAAAA-------C-----TAATTTCAATTTGCTTAg-----------tt
s panTro5.chr6             29837948 113 + 175400573 AAATTTTAATACTGGCAGGGTAATATT-CCCAAATATGTTTTCCAGTTATTATTAGGGGGAAGTTCAAATTTGTC--A--GAGTTC-------------AC-CAAAAAAAA-------C-----TAATTTCAATTTGCTTAG-----------TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30072773 113 + 173848474 AAATTTTAATACTGGCAGGGTAATATT-CCCAAATATGTTTTCCAGTTATTATTAGGGGGAAGTTCAAATTTGTC--A--GAGTTC-------------AC-CAAAAAAAA-------C-----TAATTTCAATTTGCTTAG-----------TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5879054 114 +   6154872 AAATTTTAATCCTGGCAGGGTAATATT-CCCAAATATGTTTTCCAGTTATTATTAGGGGGAAGTTCAAATTTGTC--A--GAGTTC-------------AC-CAAAAAAAA-------C-----TAATTTCAATTTGCTTAG----------TTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74587879 113 + 122973662 AAATTTTAATCCTGGCAGGGTGATATT-CCCAAATATATTTTCCAGTTATTATTAGGGGGAAGTTCAAATTTGTC--A--GAGTTC-------------AC-CAAAAAAAA-------C-----TAATTTCAATTTGCTTAg-----------tt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30069114 119 + 172585720 AAATTTTAATCCTGGCAGGGTGATATT-CCCAAAGATGTTTTCCAGTTATTATTACGG----GTTCAAATTTGTC--A--GAGTTC-------------AC-C-AAAAAAA-------C-----TAATTGCAATTTGCTTAGttttttttttttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29731957 119 - 170955103 AAATTTTAATCCTGGCAGGGTGATATT-CCCAAAGATGTTTTCCAGTTATTATTACGG----GTTCAAATTTGTC--A--GAGTTC-------------AC-C-AAAAAAA-------C-----TAATTGCAATTTGCTTAGttttttttttttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777377 113 -   2996164 AAATTTTAATCCTGGCAGGGTGATATT-CCCAAAGATGTTTTCCACTTATTATTACGG----GTTCAAATTTGTC--A--GAGTTC-------------ACAA-AAAAAAA-------C-----TAATTGCAATTTGCTTAG-------TTTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     531000 114 +    766320 AAATTTTAATCCTGGCAGGGTGACATT-CCCAAAGATGTTTTCCAGTTATTATTACGG----GTTCAAATTTGTC--A--GAGTTC-------------AC-C-AAAAAAA-------C-----TAATTTCAATTTGCTTAG-----tttttttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28987851 112 -  71996105 AAATTTTAATCCTGGCAGGGTGATATT-CCCAAAGATGTTTTCCAGTTATTATTACGG----GTTCAAATTTGTC--A--GAGTTC-------------AC-C-AAAAAAA-------C-----TAATTGCAATTTGCTTAG-------TTTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     163998 114 +    290775 AAATTTTAATCCTGGCAGGGTGACATT-CCCAAAGATGTTTTCCAGTTATTATTACAG----GTTCAAATTTGTC--A--GAGTTC-------------AC-C-AAAAAAA-------C-----TAATTTCAATTTGCTTAG-----tttttttt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2622439 107 -   3067355 AAATTTTAATCCTGGCAGGGTGATAGT-CCCAAAGATGTTTTCCAGTTATTATTATGG----GTTCAAATTTGTC--A--GAGTTC-------------AC-C-AAAAAAA-------C-----TAATTTCAATTTGCTTAG------------T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30061599 113 + 171630274 AGATTTTAATCCTGACAGGGTGATACA-CCCAAAGGTGTTTTCCAGTTATTATTAAGGGGAAGTTCAAATTTGTC--A--GAGTTC-------------AC-C-AAAAAAA-------T-----TAATTTCAATTTGCTTAG----------TTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           209775 115 -    242197 AGATTTTAATCCTGACAGGGTGATATA-CCCAACGGTGCTTTCCAGTTATTATTAAGGGGAAGTTCAAATTTGTC--A--GAATTC-------------AC-T-AAAAAAA-------A-----TAATTTCAATTTGCTTAG--------TTTTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     203164 113 -   1771730 AGATTTTAATCCTGACAAGGTGATATA-CCCAAAGGTGCTTTCCAGTTATTATTAAGGGGAAGTTCAAATTTGTC--A--GAGTTC-------------AC-C-AAAAAAA-------T-----TAATTTCAATTTGCTTAG----------GGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     277520 112 -    457564 AGATTTTAATCCTGACAGGGTGATATA-CCCAAAGGTGTTTTCCAGTTATTATTAAGGGGAAGTTCAAATTTGTC--A--GAGTTC-------------AC-C-AAAAAAA-------T-----TAATTTCAATTTGCTTAg-----------tt
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                91350 112 + 123392446 AAATTTTAACCTTGGCAGGGTGATATT-CCCAAAGGTGTGTTTCAGTTATTATTAAGTGGAAGTTCAAATTTGTT--A--GAGTTC-------------AT-C-AAAATAA-------C-----TAATTTCAATTTGCTTAG-----------TT
i micMur3.chr6             I 139 I 31
s proCoq1.NW_012152574v1     586193 112 +    730504 AGATTTCAACCCTGGCAGGGTGATATT-CCCAAAGGTGTTCTTCAGTTATTATTAAGTGGAAGTTCAAATTTGTT--A--GAGTTC-------------AC-C-AAAATAA-------C-----TAATTTCAATTTGCTTAG-----------TT
i proCoq1.NW_012152574v1   C 0 I 19
s otoGar3.GL873550            98060 113 +  18854210 AGATTTTAACTCTGGCAGGATAATATT-CCTAAAGGTGTTTTTCAGTTATTATTAAACAGAAGTTCAAATTTGTC--C--AAGTTT-------------AC-A-AAAAGAA------CC-----TAATTTCAATTTGCTTAG-----------TT
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               57920785 125 -  94987271 ------CAGTCCTAGCAGGGACACGTTCCCCAAAACTGTTTTCCAGTTACTATTAAGAGGAAACTCACTTTTGTA--A--GGGGGTTGGGGTGGGGAAGAT-G-CAAAACA-------CCTACTTAATTTCAATTTGCTCAG-----------Ct
i mm10.chr17               C 0 C 0
s canFam3.chr35            26218731 119 +  26524999 ATTTTTTAACTCTGGCAGGGTGACATT-CCCAAAGGTGTTTTCTGGTTATTATTAAAAGGAAG--CCAGTTTGTC--GACGAGTTC-------------AC-A-AAAGAAAATAAAATC-----TAATTTCAATTTGCTTAG-----------CT
i canFam3.chr35            I 2 C 0
s dasNov3.JH582591            26332 112 +    102524 AGACTTTAACCCTACCA-GGTGATGTT-CCTGAAGGTGTTTTCCACTTTCTATTAAGAGGAAGCTCAAATTTGTTGAA--GAATTC-------------AC-CAGAAAAAA-------T-----TAATTTCAATTTGACTCG-------------
i dasNov3.JH582591         C 0 C 0

a score=25789.000000
s hg38.chr6_GL000254v2_alt   875391 2 +   4827813 tt
s panTro5.chr6             29838061 2 + 175400573 TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30072886 2 + 173848474 TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5879168 2 +   6154872 TT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74587992 2 + 122973662 tt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30069233 2 + 172585720 tt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29732076 2 - 170955103 tt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777490 2 -   2996164 TT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     531114 2 +    766320 tt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28987963 2 -  71996105 TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     164112 2 +    290775 tt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2622546 2 -   3067355 TT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30061712 2 + 171630274 TT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           209890 2 -    242197 TT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     203277 2 -   1771730 TT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     277632 2 -    457564 tt
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57920910 1 -  94987271 -t
i mm10.chr17               C 0 I 10
s canFam3.chr35            26218850 2 +  26524999 TT
i canFam3.chr35            C 0 C 0
e micMur3.chr6                91462 31 + 123392446 I
e dasNov3.JH582591            26444 0 +    102524 C
e proCoq1.NW_012152574v1     586305 19 +    730504 I
e otoGar3.GL873550            98173 2 +  18854210 I

a score=118455.000000
s hg38.chr6_GL000254v2_alt   875393 13 +   4827813 ttttttaaagaat---
s panTro5.chr6             29838063 13 + 175400573 TTTTTTAAAGAAT---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30072888 13 + 173848474 TTTTTTAAAGAAT---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5879170 13 +   6154872 TTTTTTAAAGAAT---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74587994 13 + 122973662 ttttttaaagaat---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30069235 13 + 172585720 tttttttAAGAAT---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29732078 13 - 170955103 tttttttAAGAAT---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777492 13 -   2996164 TTTTTTTAAGAAT---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     531116 13 +    766320 tttttttAAGAAT---
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28987965 13 -  71996105 TTTTTTTAAGAAT---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     164114 13 +    290775 tttttttAAGAAT---
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2622548 13 -   3067355 TTTTTTTAAGAAT---
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30061714 13 + 171630274 TTTTTTAAAGAAT---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           209892 13 -    242197 TTTTTTAGAGAAT---
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     203279 12 -   1771730 TTTTTTA-AGAAT---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     277634 13 -    457564 ttttttaaagaat---
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            98175  7 +  18854210 ------AAAAAAA---
i otoGar3.GL873550         I 2 I 6
s mm10.chr17               57920921 11 -  94987271 --aattaaaaaaG---
i mm10.chr17               I 10 I 2
s canFam3.chr35            26218852  9 +  26524999 ----AAAAAGAAA---
i canFam3.chr35            C 0 I 5
s dasNov3.JH582591            26444 16 +    102524 CTTTTTAAACAAATGT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                91462 31 + 123392446 I
e proCoq1.NW_012152574v1     586305 19 +    730504 I

a score=232780.000000
s hg38.chr6_GL000254v2_alt   875406 12 +   4827813 aatttaggccat
s panTro5.chr6             29838076 12 + 175400573 AATTTAGGCCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30072901 12 + 173848474 AATTTAGGCCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5879183 12 +   6154872 AATTTAGGCCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74588007 12 + 122973662 aatttaggccat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30069248 12 + 172585720 AATTTAGGCCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29732091 12 - 170955103 AATTTAGGCCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777505 12 -   2996164 AATTTAGGCCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     531129 12 +    766320 AATTTAGGCCAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28987978 12 -  71996105 AATTTAGGCCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     164127 12 +    290775 AATTTAGGCCAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2622561 12 -   3067355 AATTTAGGCCAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30061727 12 + 171630274 AATTTAGGCCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           209905 12 -    242197 AATTTAGGCCAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     203291 12 -   1771730 AATTTAGGCCAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     277647 12 -    457564 aatttaggccat
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     586324 12 +    730504 AATTTAGGCCAT
i proCoq1.NW_012152574v1   I 19 I 3
s otoGar3.GL873550            98188 12 +  18854210 AATTTAGGCCAT
i otoGar3.GL873550         I 6 I 3
s mm10.chr17               57920934 12 -  94987271 AATTTAGGCCAG
i mm10.chr17               I 2 C 0
s canFam3.chr35            26218866 12 +  26524999 AATTTAGGCCAT
i canFam3.chr35            I 5 C 0
s dasNov3.JH582591            26460 12 +    102524 AATTTAGGCCAT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                91462 31 + 123392446 I

a score=1117344.000000
s hg38.chr6_GL000254v2_alt   875418 73 +   4827813 gcagcatttatagcaatccagaaCATTGTCCTAAATTCGAATTGT--------------------AAAAAAAAAAAAAAAAGGGCAAAACTCC
s panTro5.chr6             29838088 71 + 175400573 GCAGCATTTATAGCAATCCAGAACACTGTCCTAAATTCGAATTGT----------------------AAAAAAAAAAAAAAGGGCAAAACTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30072913 71 + 173848474 GCAGCATTTATAGCAATCCAGAACACTGTCCTAAATTCGAATTGT----------------------AAAAAAAAAAAAAAGGGCAAAACTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5879195 73 +   6154872 GCAGCATTTATAGCAATCCAGAACACTGTCCTAAATTCGAATTGT--------------------AAAAAAAAAAAAAAAAGGGCAAAACTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74588019 73 + 122973662 gcagcatttatagcaatccagaaCACTGTCCTAAATTCAAATTGT--------------------AAAAAAAAAAAAAAAAGGGCAAAACTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30069260 74 + 172585720 GCAGCATTTATAGCAACCCAAAACACTGTCCTAAATTCAAATTGT-------------------aaaaaaaaaaaaaaaaaGGGCAAAACTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29732103 70 - 170955103 GCAGCATTTATAGCAACCCAGAACACTGTCCTAAATTCAAATTGT-----------------------AAAAAAAAAAAAAGGGCAAAACTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777517 70 -   2996164 GCAGCATTTATAGCAACCCAGAACACTGTCCTAAATTCAAATTGT-----------------------AAAAAAAAAAAAAGGGCAAAACTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     531141 70 +    766320 GCAGCATTTATAGCAACCCAGAACACTGTCCTAAATTCAAATTGT-----------------------GAAAAAAAAAAAAGGGCAAAACTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28987990 70 -  71996105 GCAGCATTTATAGCAACCCAGAACACTGTCCTAAATTCAAATTGT-----------------------AAAAAAAAAAAAAGGGCAAAACTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     164139 69 +    290775 GCAGCATTTATAGCAACCCAGAACACTGTCCTAAATTCAAATTGT------------------------AAAAAAAAAAAAGGGCAAAACTCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2622573 79 -   3067355 GCAGCATTTATAGCAACTCAGAACACTGTCCTAAATTCAAATTGTaaaaa--------------aaaaaaaaaaaaaaaaaGGGCAAAACTCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30061739 70 + 171630274 GCAGCATTTATAGCAATCCAGAACACTGTCCTAAATTCAAATTAT-----------------------AAAAAAAAAAAAAGTGCAAAACTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           209917 68 -    242197 GCAGCATTTATAGCAATCCAGAACACTGTCCTAAATTCAAATTAT-------------------------TAAAAAAAAAAGTGCAAAACTCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     203303 78 -   1771730 GCAGCATTTATAGCAATCCAGAGCACTGTCCTAAATTCAAATTAT-aaaa--------------aaaaaaaaaaaaaaaaaGTGCAAAACTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     277659 70 -    457564 gcagcatttatagcaatccagaaCACTGTCCTAAATTCAAATTAT-----------------------AAAAAAAAAAAAAGTGCAAAACTCC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                91493 65 + 123392446 GCAGCATTTATAGCAGTACGGAACACTGTCCTAAATTCAAATTAT----------------------------GAAAAAAATTGCAAAACTCC
i micMur3.chr6             I 31 C 0
s proCoq1.NW_012152574v1     586339 64 +    730504 GCAGCATTTATAGCAGTGCAGAACACTGTCCTAAATTCAAATTAT-----------------------------AAAAAAATTGCAAAACTCC
i proCoq1.NW_012152574v1   I 3 C 0
s otoGar3.GL873550            98203 65 +  18854210 GCAGCATTTATAGCAGTACAGAACACTGTCCTAAATTCAAATTAT----------------------------AAAAAAAATTTCAAAACTCC
i otoGar3.GL873550         I 3 C 0
s mm10.chr17               57920946 93 -  94987271 GCGGCATTTATAACTATACAGAACACTGGCCTAAATTCAAGCTACaaaaataagtaaataatttaaaaaaaaaaaaaaaGGAAGTAAAGCGCC
i mm10.chr17               C 0 I 1116
s canFam3.chr35            26218878 65 +  26524999 GTGGCATTTATAGCAGTATAGAATACTGTCCTAAATTCAAATTAT----------------------------AAAAAACATGTCAGAACTCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            26472 66 +    102524 GCAGCATTTATAGCACTACAGAACACTGTCCTAAATTCAAGTTAT-----------------------TAAAAAAAAAAAACC----AACTCT
i dasNov3.JH582591         C 0 C 0

a score=405267.000000
s hg38.chr6_GL000254v2_alt   875491 23 +   4827813 AGCAGTGCTGGGAATGACTGGAT
s panTro5.chr6             29838159 23 + 175400573 AGCAGTGCTGGGAATGACTGGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30072984 23 + 173848474 AGCAGTGCTGGGAATGACTGGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5879268 23 +   6154872 AGCAGTGCTGGGAATGACTGGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74588092 23 + 122973662 AGCAGTGCTGGGAATGACTAGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30069334 23 + 172585720 AGCAGTGCTGGGAATGACTAGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29732173 23 - 170955103 AGCAGTGCTGGGAATGACTAGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777587 23 -   2996164 AGCAGTGCTGGGAATGACTAGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     531211 23 +    766320 AGCAGTGCTGGGAATGACTAGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28988060 23 -  71996105 AGCAGTGCTGGGAATGACTAGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     164208 23 +    290775 AGCAGTGCTGGGAATGACTAGAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2622652 23 -   3067355 AGCAGTGCTGGGAATGACTAGAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30061809 23 + 171630274 AGCAGTGCTGGGAATAACTAGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           209985 23 -    242197 AGCAGTGCTGGGAATAACTAGAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     203381 23 -   1771730 AGCAGTGCTGGGAATAACTAGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     277729 23 -    457564 AGCAGTGCTGGGAATAACGAGAT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                91558 23 + 123392446 AGCAGTGCTGGGAATGACTAGAT
i micMur3.chr6             C 0 I 73
s proCoq1.NW_012152574v1     586403 23 +    730504 AGCAGTGCTGGGAACGACTAGAT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            98268 23 +  18854210 AGCAGTGCTGGGAATGACTAGAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26218943 23 +  26524999 GGCAGTGCTGGAAACCACTAGCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            26538 23 +    102524 GGCAGTGCTGGGAACTACTCGGC
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57921039 1116 -  94987271 I

a score=124060.000000
s hg38.chr6_GL000254v2_alt   875514 10 +   4827813 ATCTGCTGGG
s panTro5.chr6             29838182 10 + 175400573 ATCTGCTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30073007 10 + 173848474 ATCTGCTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5879291 10 +   6154872 ATCTGCTGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74588115 10 + 122973662 TTCTGCTGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30069357 10 + 172585720 TTCCACTGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29732196 10 - 170955103 TTCCACTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777610 10 -   2996164 TTCCACTGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     531234 10 +    766320 TTCCACTGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28988083 10 -  71996105 TTCCACTGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     164231 10 +    290775 TTCCACTGGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2622675 10 -   3067355 TTCCACTGGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30061832 10 + 171630274 TTCCGCTGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           210008 10 -    242197 TTCCGCTGGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     203404 10 -   1771730 TTCCGCTGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     277752 10 -    457564 TTCCGCTGGG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     586426 10 +    730504 TTCAGCTGGG
i proCoq1.NW_012152574v1   C 0 I 63
s otoGar3.GL873550            98291 10 +  18854210 ATCCGTTGGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26218966  9 +  26524999 -TCCAGTGGG
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            26561 10 +    102524 TTTATTTGGG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                91581 73 + 123392446 I
e mm10.chr17               57921039 1116 -  94987271 I

a score=762912.000000
s hg38.chr6_GL000254v2_alt   875524 62 +   4827813 CAGGGCAGACGGCAGCCATCTTCAATGGTTGAGCCTCCCCTTCATTCTCAAGGAG-----GCTTTCT------
s panTro5.chr6             29838192 62 + 175400573 CAGGGCAGATGGCAGCCATCTTCAATGGTTGGGCCTCCCCTTCATTCTCAAGGAG-----GCTTTCT------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30073017 62 + 173848474 CAGGGCAGATGGCAGCCATCTTCAATGGTTGGGCCTCCCCTTCATTCTCAGGGAG-----GCTTTCT------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5879301 62 +   6154872 CAGGGCAGACGGCAGCCATCTTCAATGGTTGGGCCTCCCCTTCATTCTCAAGGAG-----GCTTTCT------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74588125 62 + 122973662 CAGGGCAGATGGCAGCCTTCTTCAATGGCTGGGCCTCCCCTTCATTCTCAAGGAG-----CCTTTCT------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30069367 62 + 172585720 CAGGGCAGATGGCAGCCGTCTTCAATGGCTGGGCCTCCCCTTCATTCTCAAGGAG-----CCTTTCT------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29732206 62 - 170955103 CAGGGCAGATGGCAGCCGTCTTCAATGGCTGGGCCTCCCCTTCATTCTCAAGGAG-----CCTTTCT------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777620 62 -   2996164 CAGGGCAGATGGCAGCCGTCTTCAATGGCTGGGCCTCCCCTTCATTCTCAAGGAG-----CCTTTCT------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     531244 62 +    766320 CAGGGCAGATGGCAGCCGTCTTCAATGGCTGGGCCTCCCCTTCATTCTCAAGGAG-----CCTTTCT------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28988093 62 -  71996105 CAGGGCAGATGGCAGCCGTCTTCAATGGCTGGGCCTCCCCTTCATTCTCAAGGAG-----CCTTTCT------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     164241 62 +    290775 CAGGGCAGATGGCAGCCGTCTTCAATGGCTGGGCCTCCCCTTCATTCTCAAGGAG-----CCTTTCT------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2622685 62 -   3067355 CAGGGCAGATGGCAGCCGTCTTCAATGGCTGGGCCTCCCCTTCATTCTCAAGGAG-----CCTTTCT------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30061842 62 + 171630274 CAGGGCAGATGGCTGCTGTCTTCAATGGCTGGGCCTCCCCTTCATTGTCAAGGAG-----CTTTTCT------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           210018 62 -    242197 CAGGGCAGATGGCTGCTCTCTTCAATGGCTGGGCCTCCCCTTCATTGTCAAGGAG-----GCTCTCT------
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     203414 62 -   1771730 CAGGGCAGATGGCTGCTGTCTTCAATGGCTGGGCCTCCCCTTCATTGTCAAGGAG-----CCTTTCT------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     277762 62 -    457564 CAGGGCAGATGGCTGCTGTCTTCAATGGCTGGGCCTCCCCTTCATTATCAAGGAG-----ACTTTCT------
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            98301 67 +  18854210 CAGGGCAGATGGCAGCTGTCTTCAACGGCTGGGCCTCCCCTCCACCCTCAAGGAGCCGATCCTTTCT------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26218976 42 +  26524999 TGGAGCAGCTGGCAGCTAT--------------------CTCCATCCTTGAGGTG-----CCAAGCC------
i canFam3.chr35            I 1 I 5
s dasNov3.JH582591            26571 63 +    102524 CAGGACAGATGGCAGCTGTCTTCAATGGCTGAGC-----CTTCACCCTGCAGCTG-----CCAATCTCTTTGT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                91581 73 + 123392446 I
e mm10.chr17               57921039 1116 -  94987271 I
e proCoq1.NW_012152574v1     586436 63 +    730504 I

a score=1510395.000000
s hg38.chr6_GL000254v2_alt   875586  99 +   4827813 TTTATCAGTAGGTCCTTC-------CTTTTGTCCACCTTCAGTTTCTCTCCTATGTCCTATCATTTAGA---CCAAGTACACAAAGAATAACTGCTTGCTTTCTCTCTT
s panTro5.chr6             29838254  99 + 175400573 TTTATCAGTAGGTCCTTC-------CTTTTGTCCACCTTCAGTTTCTCTCCTATGTCCTATCATTTAGG---CCAAGTACACAAAGAATAACTGCTTGCTTTCTCTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30073079  99 + 173848474 TTTATCAGTAGGTCCTTC-------CTTTTGTCCACCTTCAGTTTCTCTCCTATGTCCTATCATTTAGG---CCAAGTACACAAAGAATAACTGCTTGCTTTCTCTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5879363  99 +   6154872 TTTATCAGTAGGACCTTC-------CTTTTGTCCACCTTCAGTTTCTCTCCCATGTCCTATCATTTAGG---CCAAGTACACAAAGAATAACTGCTTCCTTTCTCTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74588187 106 + 122973662 TTTATCAGTAGGTCCTTCCTTTTGTCTTTTGTCCACCTTCGGTTTCTCTCCTACGTCCTATCATTTAGG---CCAAGTACGCAAAGAATAACTACTTGCTTTCTCTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30069429  99 + 172585720 TTTATCAGTAGGTCCCTC-------CTTTTGTCCCCCTTCAGTTTCTCTCCCATGTCCTATCATTAAGG---CCAAGTACACAAAGAATAACTGCTTACTTTCCCTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29732268  99 - 170955103 TTTATCAGTAGGTCCCTC-------CTTTTGTCCCCCTTCAGTTTCTCTCCCATGTCCTATCATTAAGG---CCAAGTACACAAAGAATAACTGCTTACTTTCCCTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777682  99 -   2996164 TTTATCAGTAGGTCCCTC-------CTTTTGTCCCCCTTCAGTTTCTCTCCCATGTCCTATCATTAAGG---CCAAGTACACAAAGAATAACTGCTTACTTTCCCTCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     531306  99 +    766320 TTTATCAGTAGGTCCCTC-------CTTTTGTCCCCCTTCAGTTTCTCTCCCATGTCCTATCATTAAGG---CCAAGTACACAAAGAATAACTGCTTACTTTCCCTCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28988155  99 -  71996105 TTTATCAGTAGGTCCCTC-------CTTTTGTCCCCCTTCAGTTTCTCTCCCATGTCCTATCATTAAGG---CCAAGTACACAAAGAATAACTGCTTACTTTCCCTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     164303  99 +    290775 TTTATCAGTAGGTCCCTC-------CTTTTGTCCCCCTTCAGTTTCTCTCCCATGTCCTATCATTAAGG---CCAAGTACACAAAGAATAACTGCTTACTTTCCCTCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2622747  99 -   3067355 TTTATCAGTAGGTCCTTC-------CTTTTGTCCCCCTTCAGTTTCTCTCCTATGTCCTATCATTTAGG---CCAAACACACAAAGAATAACTGCTTACTTTCCCTCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30061904 102 + 171630274 TTTATCAGTAGGTCCTTC-------CTTTTGTCCACCTTCAGTTTCTCTCCTATGTCCTATCATGTACGCCACCAGGTACACAAAGAATAACTGCTTACTTTCCCTCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           210080 102 -    242197 TTCATCAGTAGGTCCTTC-------CTTTTGTCCACCTTCAGTTTCTCTCCTCTGTCCTATCATGTAGGCCACCAGGTACACAAAGAATAACTGCTTACTTTCCCTCTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     203476 102 -   1771730 TTTATCAGTAGGTCCTTC-------CTTTTGTCGACCTTCAGTTTCTCTCCTATGTCCTATCATGTAGGCCACCAAGTACACAAAGAATAACTGCTTACTTTCCCTCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     277824 102 -    457564 TTTATCAGTAGGTCCTTC-------CTTTTGTCCACCTTCAGTTTCTCTCCTATGTCCTATCATGTAGGCCACCAGGTACACAAAGAATAACTGCTTACTTTCCCCCTT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                91654 102 + 123392446 TTTACCAGGAGGTCCTTC-------CTTTTGCCCACCTTCACACTCTCTCCTCTTTCCTATCATTTAGGCCACCAAGTACACAAAGAGCAACTGCTTACTTTCCCTCTT
i micMur3.chr6             I 73 C 0
s proCoq1.NW_012152574v1     586499 102 +    730504 TTTACCAGGAGGTCCTTC-------CTTTTGCCCACCTTCACATTCTCTCCTCTTTCCTATCATTTAGGCCACCAACTACACAAAGAGCAATTGCTTACTTTCCCTCTT
i proCoq1.NW_012152574v1   I 63 I 2
s otoGar3.GL873550            98368 102 +  18854210 TTTATCAGTAGGTCCTTC-------CTTTTGCCCACCTTCAAATTCTCTCCCATTTCTTATCATTCAGGCCACCAAGTGCACAAAGAGTAATTGCTTATGCTCCCTCTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26219023 102 +  26524999 TCTACTAGTAGGTCCTTC-------CTTTTGTCCACCTGGAGGATCTGTCCCATTTCTGATTATTTAGCCCACCAGGCACACAAGGAATAATTGCTTACTTTTTGTCTT
i canFam3.chr35            I 5 C 0
s dasNov3.JH582591            26634  92 +    102524 TTTA-CAGTAGACCCTAC-------C-TTTGTCCACCATCAGTAGCTTTCCCATTTTCTATTGTTTAGCCCACCAAGTATGCAAAGAATAATTGCTTTCTT--------
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57921039 1116 -  94987271 I

a score=104418.000000
s hg38.chr6_GL000254v2_alt   875685 7 +   4827813 TAAAAAG
s panTro5.chr6             29838353 7 + 175400573 TAAAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30073178 7 + 173848474 TAAAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5879462 7 +   6154872 TAAAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74588293 7 + 122973662 TAAAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30069528 7 + 172585720 TAAAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29732367 7 - 170955103 TAAAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777781 7 -   2996164 TAAAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     531405 7 +    766320 TAAAAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28988254 7 -  71996105 TAAAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     164402 7 +    290775 TAAAAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2622846 7 -   3067355 TAAAAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30062006 7 + 171630274 TAAAAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           210182 7 -    242197 TAAAAAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     203578 7 -   1771730 TAAAAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     277926 7 -    457564 CAAAAAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                91756 7 + 123392446 TAAAAAG
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550            98470 7 +  18854210 TATAAAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26219125 7 +  26524999 TAAAAAG
i canFam3.chr35            C 0 C 0
e mm10.chr17               57921039 1116 -  94987271 I
e dasNov3.JH582591            26726 0 +    102524 C
e proCoq1.NW_012152574v1     586601 2 +    730504 I

a score=71338.000000
s hg38.chr6_GL000254v2_alt   875692 8 +   4827813 TA-TATTTt
s panTro5.chr6             29838360 8 + 175400573 TA-TATTTt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30073185 8 + 173848474 TA-TATTTt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5879469 8 +   6154872 TA-TATTTt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74588300 8 + 122973662 TA-TATTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30069535 8 + 172585720 TA-TATTTt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29732374 8 - 170955103 TA-TATTTt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777788 8 -   2996164 TA-TATTTt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     531412 8 +    766320 TA-TATTTt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28988261 8 -  71996105 TA-TATTTt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     164409 8 +    290775 TA-TATTTt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2622853 8 -   3067355 TA-TATTTt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30062013 9 + 171630274 TATTATTTt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           210189 9 -    242197 TATTATTTt
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     203585 9 -   1771730 TATTATTTt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     277933 9 -    457564 TATTATTTt
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                91763 8 + 123392446 CA-CATTTT
i micMur3.chr6             C 0 I 412
e mm10.chr17               57921039 1116 -  94987271 I
e dasNov3.JH582591            26726 0 +    102524 C
e proCoq1.NW_012152574v1     586601 2 +    730504 I
e canFam3.chr35            26219132 0 +  26524999 C
e otoGar3.GL873550            98477 0 +  18854210 C

a score=503356.000000
s hg38.chr6_GL000254v2_alt   875700 60 +   4827813 gagggatgtaatactac---------ctattaggtacaaggtgcactgttcgggtgacaggcacact---aa
s panTro5.chr6             29838368 60 + 175400573 gagggatgtaatactac---------ctattaggtacaaggtgcactattcgggtgacaggcgcact---aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30073193 60 + 173848474 gagggatgtaatactac---------ctattaggtacaaggtgcactattcgggtgacaggcgcact---aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5879477 60 +   6154872 gagggatgtaatactac---------ctattaggtacaaggtacactattcgggtgacaggcgcact---aa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74588308 60 + 122973662 gagggatgtaatactac---------ctattaggtacaaggtacactattcaggtgacaggcgcatt---aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30069543 60 + 172585720 gcgggatgaagtactac---------ctattaggtacaatgtacacgatttgggtgacaggcgcact---aa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29732382 60 - 170955103 gcgggatgaagtactac---------ctattaggtacaatgtacacgatttgggtgacaggcgcact---aa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777796 60 -   2996164 gcgggatgaagtactac---------ctattaggtacaatgtacacgatttgggtgacaggcgcact---aa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     531420 60 +    766320 gagggatgaagtactac---------ctattaggtacagtgtacactatttgggtaacaggcgcact---aa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28988269 60 -  71996105 gcgggatgaagtactac---------ctattaggtacaatgtacactatttgggtgacaggtgcact---aa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     164417 60 +    290775 gagggatgaagtactac---------ctattaggtacagtgtacattatttgggtaacaggcgcact---aa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2622861 69 -   3067355 gagggatgaagtactacctattaggtctattaggtacaatgtacactatttgggtgacaggcgcact---aa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30062022 59 + 171630274 gagggatgaaata-------------ctattgggtgcattgtacactattctggtgacaggtgtactgaaag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           210198 60 -    242197 gagagatgaaatactac---------ctattaggtacattgtacactattccagtgacaggcgtact---aa
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     203594 60 -   1771730 gagggatgaaatactac---------ctattaggtacattgtacactattccggtgacaggcatact---aa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     277942 60 -    457564 gagggatgaaatactac---------ctattaagtacattgtacactagtccggtgacaggcatact---aa
i aotNan1.NW_018509740v1   C 0 C 0
s dasNov3.JH582591            26726  9 +    102524 ------------------------------------------------------------GCCCACT---GA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                91771 412 + 123392446 I
e mm10.chr17               57921039 1116 -  94987271 I
e proCoq1.NW_012152574v1     586601  2 +    730504 I
e canFam3.chr35            26219132  0 +  26524999 C
e otoGar3.GL873550            98477  0 +  18854210 C

a score=730629.000000
s hg38.chr6_GL000254v2_alt   875760 87 +   4827813 acgcccggacttcaccactatgcaatatattcatgtaacacaactgcacgtctacctct-aaattacataaaaataggaaaaTTTTTA
s panTro5.chr6             29838428 87 + 175400573 acgcccggacttcaccactatgcaatatattcatgtaacacaactgcacgtctacctct-aaattacataaaaataggaaaaTTTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30073253 87 + 173848474 acgcccggacttcaccactatgcaatatattcatgtaacacaactgcacgtctacctct-aaattacataaaaataggaaaaTTTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5879537 87 +   6154872 acgcccgggcttcaccactatgcaatatattcatgtaacacaactgcacatctacctct-aaattacataaaaataggaaaaTTTTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74588368 87 + 122973662 atgcccggacttcaccactatgcaatatattcatgtaacacaactgcacgtctacctct-aacttacataaaaataggaaaaTTTTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30069603 88 + 172585720 atgcccagacttcaccactatgcaatatattcatgtaacacaactgcatgtgtacctctaaaattatataaaaataggaaaaTTTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29732442 88 - 170955103 acgcccagacttcaccactatgcaatatattcatgtaacacaactgcatgtgtacctctaaaattatataaaaataggaaaaTTTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777856 88 -   2996164 acgcccagacttcaccactatgcaatatattcatgtaacacaactgcatgtgtacctctaaaattatataaaaataggaaaaTTTTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     531480 88 +    766320 atgcccagacttcaccactatgcaatatattcatgtaacacaactgcatgtgtacctctaaaattacataaaaataggaaaaTTTTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28988329 88 -  71996105 acgcccagacttcaccactatgcaatatattcatgtaacacaactacatgtgtacctctaaaattacataaaaataggaaaaTTTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     164477 88 +    290775 atgcccagacttcaccactatgcaatatattcatgtaacacaactgcatgtgtacctctaaaattacataaaaataggaaaaTTTTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2622930 88 -   3067355 acacccagacttcaccactatgcaatatattcatgtaacacaactgcacgtgtacctctaaaattacataaaaataggaaaaTTTTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30062081 74 + 171630274 aagcatgg-cttcaccactgtgcaatatattcatgtaacacaacagcacgtgtaccttg-aaattacataaaaata------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           210258 74 -    242197 aagcatgg-cttcaccactgtgcaatatattcatgtaacacaactgcacgtgtacctcc-aaattacataaaaata------------
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     203654 74 -   1771730 aagcatgg-cttcaccactgtacaatatattcatgtaacacaactgcacgtgtatctcc-aaattacataaaaata------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     278002 74 -    457564 aagcatgg-cttcaccactgtgcaatatattcatgtaacacaactgcacgtgtacctcc-aaattacataaaaata------------
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6                91771 412 + 123392446 I
e mm10.chr17               57921039 1116 -  94987271 I
e dasNov3.JH582591            26735  0 +    102524 C
e proCoq1.NW_012152574v1     586601  2 +    730504 I
e canFam3.chr35            26219132  0 +  26524999 C
e otoGar3.GL873550            98477  0 +  18854210 C

a score=146741.000000
s hg38.chr6_GL000254v2_alt   875847 17 +   4827813 AAAATACATATAAAAAT
s panTro5.chr6             29838515 17 + 175400573 AAAATACATATAAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30073340 17 + 173848474 AAAATACATATAAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5879624 17 +   6154872 AAAATACATATAAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74588455 17 + 122973662 AAAATACATATAAAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30069691 17 + 172585720 AAAATGCATATAAAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29732530 17 - 170955103 AAAATGCATATAAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777944 17 -   2996164 AAAATGCATATAAAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     531568 17 +    766320 AAAATGCATATAAAAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28988417 17 -  71996105 AAAATGCATATAAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     164565 17 +    290775 AAAATGCATATAAAAAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2623018 17 -   3067355 AAAATGCATATAAAAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30062155 11 + 171630274 ------catataaaaat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           210332 11 -    242197 ------CATATAAAAAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     203728 11 -   1771730 ------CATATAAAAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     278076 11 -    457564 ------CATATAAAAAT
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57922155 15 -  94987271 --AAAACAAAACAAAAC
i mm10.chr17               I 1116 C 0
e micMur3.chr6                91771 412 + 123392446 I
e dasNov3.JH582591            26735  0 +    102524 C
e proCoq1.NW_012152574v1     586601  2 +    730504 I
e canFam3.chr35            26219132  0 +  26524999 C
e otoGar3.GL873550            98477  0 +  18854210 C

a score=4556.000000
s hg38.chr6_GL000254v2_alt   875864 1 +   4827813 -A
s panTro5.chr6             29838532 1 + 175400573 -A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30073357 1 + 173848474 -A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5879641 1 +   6154872 -A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74588472 1 + 122973662 -A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30069708 1 + 172585720 -A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29732547 1 - 170955103 -A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777961 1 -   2996164 -A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     531585 1 +    766320 -A
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28988434 1 -  71996105 -A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     164582 1 +    290775 -A
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2623035 1 -   3067355 -A
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30062166 1 + 171630274 -a
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           210343 1 -    242197 -A
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     203739 1 -   1771730 -A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     278087 1 -    457564 -A
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57922170 1 -  94987271 -A
i mm10.chr17               C 0 I 2
s dasNov3.JH582591            26735 1 +    102524 T-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                91771 412 + 123392446 I
e proCoq1.NW_012152574v1     586601 2 +    730504 I
e canFam3.chr35            26219132 0 +  26524999 C
e otoGar3.GL873550            98477 0 +  18854210 C

a score=62313.000000
s hg38.chr6_GL000254v2_alt   875865 5 +   4827813 AAAAG
s panTro5.chr6             29838533 5 + 175400573 AAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30073358 5 + 173848474 AAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5879642 5 +   6154872 AAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74588473 5 + 122973662 AAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30069709 5 + 172585720 ACAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29732548 5 - 170955103 ACAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777962 5 -   2996164 ACAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     531586 5 +    766320 ACAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28988435 5 -  71996105 ACAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     164583 5 +    290775 ACAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2623036 5 -   3067355 ACAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30062167 5 + 171630274 aaaaG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           210344 5 -    242197 AAAAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     203740 5 -   1771730 AAAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     278088 5 -    457564 AAAAG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     586603 5 +    730504 AAAAG
i proCoq1.NW_012152574v1   I 2 C 0
s mm10.chr17               57922173 5 -  94987271 AAAAG
i mm10.chr17               I 2 C 0
s dasNov3.JH582591            26736 5 +    102524 AAAAG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                91771 412 + 123392446 I
e canFam3.chr35            26219132 0 +  26524999 C
e otoGar3.GL873550            98477 0 +  18854210 C

a score=1134204.000000
s hg38.chr6_GL000254v2_alt   875870 89 +   4827813 CACATTTTGGCAGATGACAATTACATGAGGTTTTCCCTCCTCCTCCATAGTTTAAGCAACCGTTTTCCTGACAGAGACAGACAAAGAGA
s panTro5.chr6             29838538 89 + 175400573 CACATTTTGGCAGATGACAATTACATGAGGTTTTCCCTCCTCCTCCATAGTTTAAGCAACCGTTTTCCTGACAGAGACAGACAAAGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30073363 89 + 173848474 CACATTTTGGCAGATGACAATTACATGAGGTTTTCCCTCCTCCTCCATAGTTTAAGCAACCGTTTTCCTGACAGAGACAGACAAAGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5879647 89 +   6154872 CACATTTTGGCAGATGACAATTACATGAGGTTTTCCCTCCTCCTCCATAGTTTAAGCAACCGTTTTCCTGACAGAGACAGACAAAGAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74588478 87 + 122973662 CATATTTTGGCAGATGACAATTACATGAGGTTTTCCCTCCTCCTCCATAGTTTAAGCAACCGTTTTCCTGAT--AGACAGACAAAGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30069714 88 + 172585720 CACATTTTGGCAGATGACAATTACATGAGGTTTTCCCTCCTCCTCCATAGTTTAAGCAACCGTTAAACTAA-AGAGACAGACAAAGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29732553 88 - 170955103 CACATTTTGGCAGATGACAATTACATGAGGTTTTCCCTCCTCCTCCATAGTTTAAGCAACCGTTAAACTAA-AGAGACAGACAAAGAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2777967 88 -   2996164 CACATTTTGGCAGATGACAATTACATGAGGTTTTCCCTCCTCCTCCATAGTTTAAGCAACCGTTAAACTAA-AGAGACAGACAAAGAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     531591 88 +    766320 CACATTTTGGCAGATGACAATTACATGAGGTTTTCCCTCCTCCTCCAGAGATTAAGCAACCGTTAAACTAA-AGAGACAGACAAAGAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28988440 88 -  71996105 CACATTTTGGCAGATGACAATTACATGAGGTTTTCCCTCCTCCTCCATAGTTTAAGCAACCGTTAAACTAA-AGAGACAGACAAAGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     164588 88 +    290775 CACATTTTGGCAGATGACAATTACATGAGGTTTTCCCTCCTCCTCCAGAGATTAAGCAACCGTTAAACTAA-AGAGACAGACAAAGAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2623041 88 -   3067355 CACATTTTGGCAGATGACAATTACATGAGGTTTTCCCTCCTCCTCCATAGTTTAAGCAACCATTAAACTAA-AGAGACAGACAAAGAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30062172 89 + 171630274 CACATTTTAGCAGATGACAAATGCATGAGGTTTTCCCTCCTCCTCCAAGGTTTAAGCAACCGTCTTCTTGACAGAGACAGACAAAGAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           210349 89 -    242197 CACATTTTAGCAGATGACAAATGCATGAGGTTTTCCCTCCTCCTCCAAGGTTTAAGCAACCGTCTTCTTGACAGAGACAGACAAAGAGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     203745 89 -   1771730 CACATTTTAGCAGATGACAAATGCATGAGGTTTTCCCTCCTCCTCCAAGGTTTAAGCAAATGTCTTCTTGACAGAGACAGACAAAGAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     278093 89 -    457564 CACATTTTAACAGATGACAAATGCATGAGGTTTTCCCTCCTCCTCCAAGGTTTAAGCAACCGTCTTCTTGACAGAGACAGACAAAGAGA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     586608 87 +    730504 CACATTTTAGCAGATGGCAGTTATATGAGGTTTTGCATCCTTCTCTACAGTTTAAGCAACCGTTTTCCTGAGGAAGACAGACAAAGA--
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            98477 88 +  18854210 CACATTTTAGCGAATGACAATTATATGAGGTTTTACATCCTCCTCTATAGTTTAAGCAAATG-TCGCCTGACAGTGACAGACAAAGACA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57922178 73 -  94987271 CCCCAAAGAGCCAATAAAAACAGCATGAAATTCTATCTTCTGCCCTGCAA-TTAGGCAGCTACTGTTCTGATAG---------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26219132 83 +  26524999 CACATTTTAGGGTATGGCAATTATATGAGGTTTTGCAACATC--TCATAATCTAAGCAACCAATTTTGTGGCAG----AGATGAAGGGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            26741 85 +    102524 CACATTTTAGCAGAACACAATTTTATTAAGCTTTGCATCCTCTTCTATAGTTTAAGCAACCATTTTCCTGACAG----AGACCAAGAGG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                91771 412 + 123392446 I

a score=8615631.000000
s hg38.chr6_GL000254v2_alt   875959 564 +   4827813 CAGCTCTGGGCTTGAAGTAGCTGGTTCAAATATATCAAGACACCAGGACATCTGGGAAACCCAAATGGAGTTTCCATTTCCCGCCCTCTGCCCA-CCCCCTGCCTCTAATCCCCAGTTACCCCAGCAATGCACCATTAAAAATAGTAC-TAACCACC----GCCTATTCCCTCTCCAAATACACCAGTCTCCCCTACCCACGCCTTAGGGGTTGTATTCACTCTCACTT---AACCCTTTCTCCTGGCCCAGCTGCCAGCCACATTCCAACCTAACAGTCTCTACCATTCCATCCTCACTCAAAGGCATGACTTTTTCCCTTGACTGTCGAGAGGGGCTGAAGGAAAATACAAACAAGATCCACTCACCAATCCATTTATCTGTTTTGGACCAGGAAAGATCATCCTTGGTGCTGTCATAGTAGCCAATCTTCTTGTAGCTGCCACCTGGGCAGACGACAATAAAAGGAGTGACCACAGGTA-GCCAAAGAGCTGATC----CTAGGCATTTTCAACTTCCCACTTCCCTAGA----GCT---TTGCATGGTTGTATCTGATTTTATTTTCA-CCTGAGGCCCT-AA
s panTro5.chr6             29838627 564 + 175400573 CAGCTCTGGGCTTGAAGTAGCTGGTTCAAATATATCAAGACACCAGGACATCTGGGAAACACAAATGGAGTTTCCATTTCCCGCCCTCTGCCCA-CCCCCTGCCTCTAATCCCCAGTTACCCCAGCAATGCACCATTAAAAATAGTAC-TAACCACC----GCCTATTCCCTCTCCAAATACACCAGTCTCCCCTACCCACGCCTTAGGGGTTGTATTCACTCTCACTT---AACCCTTTCTCCTGGCCCAGCTGCCAGCCACATTCCAACCTAACAGTCTCCACCATTCCATCCTCACTCAAAGGCATGACTTTTTCCCTTGACTGTCGAGAGGGGCTGAAGGAAAATACAAACAAGATCCACTCACCAATCCATTTATCTGTTTTGGACCAGGAAAGATCATCCTTGGTGCTGTCATAGTAGCCAATCTTCTTGTAGCTGCCACCTGGGCAGACGACAATAAAAGGAGTGACCACAGGTA-GCCAAAGAGCTGATC----CTAGGCATTTTCAACTTCCCACTTCCCTAGA----GCT---TTGCATGGTTGTATCTGATTTTATTTTCA-CCTGAGGCCCT-AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30073452 564 + 173848474 CAGCTCTGGGCTTGAAGTAGCTGGTTCAAATATATCAAGACACCAGGACATCTGGGAAACACAAATGGAGTTTCCATTTCCCGCCCTCTGCCCA-CCCCCTGCCTCTAATCCCCAGTTACCCCAGCAATGCACCATTAAAAATAGTAC-TAACCACC----GCCTATTCCCTCTCCAAATACACCAGTCTCCCCTACCCACGCCTTAGGGGTTGTATTCACTCTCACTT---AACCCTTTCTCCTGGCCCAGCTGCCAGCCACATTCCAACCTAACAGTCTCCACCATTCCATCCTCACTCAAAGGCATGACTTTTTCCCTTGACTGTCGAGAGGGGCTGAAGGAAAATACAAACAAGATCCACTCACCAATCCATTTATCTGTTTTGGACCAGGAAAGATCATCCTTGGTGCTGTCATAGTAGCCAATCTTCTTGTAGCTGCCACCTGGGCAGACGACAATAAAAGGAGTGACCACAGGTA-GCCAAAGAGCTGATC----CTAGGCATTTTCAACTTCCCACTTCCCTAGA----GCT---TTGCATGGTTGTATCTGATTTTATTTTCA-CCTGAGGCCCT-AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5879736 561 +   6154872 CAGCTCTGGGCTTGAAGTAGCTGGTTCAAATATATCAAGACACCAGGACATCTGGGAAACCCAAATGGAGTTTCCATTTCCCGCCCT----CCC-CCCCCTGCCTCTAATCCCCAGTTACCCCAGCAATGCACCATCAAAAATAGTAC-TAACCACC----GCCTATTCCCTCTCCAAATACACCAGTCTCCCCTACCCACGCCTTAGGGGTTGTATTCACTCTCACTT---AACCCTTTCTCCTGGCCCAGCTGCCAGCCACATTCCAACCTAACAGTCTCCACCATTCCATCCTCACTCAAAGGCATGACTTTTTCCCTTGACTGTCCAGAGGGGCTGAAGGAAAATACAAACAAGATCCACTCACCAATCCATTTATCTGTTTTGGACCAGGAAAGATCATCCTTGGTGCTGTCATAGTAGCCAATCTTCTTGTAGCTGCCACCTGGGCAGATGACAATAAAAGGAGTGACCACAGGTA-GCCAGAGAGCTGATC----CTAGGCATTTTCAACTTCCCACTTCCCTAGA----GCT---TTGCATGGTTGTATCTGATTTTATTTTCA-CCTGAGGCCCTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74588565 565 + 122973662 CAGCTCTGGGCTTGAAGTAGCTGGTTCAAATATATCAAGACACCAGGACATCTGGGAAACCCAAATGGAGTTTCCATTTCCCGCCCTCTGCCCA-CCCCCTGCCTCTAATCCCCAGTTACCCCAGCAATGTACTATTAAAAATAGTGC-TAACCACC----GCCTATTCCCTCTCCAAATACACCAGTCTCCCCTACCCACGCCTTAGGGGTTGTATTCACTCTCACTT---AACCCTTTCTCCTGGCCCAGCTGCCAGCCACATTACAACCTAACAGTCTCCACCATTCCATCCTCACTCAAAGGCATGACTTTTTCCCTTGACTGTCCAGAGGGGCTGAAGGAAAATACAAACAAGATCCACTCACCAATCCACTTATCTGTTTTGGACCAGGAAAGATCATCCTTGGTGCTGTCATAGTAGCCAATCTTCTTGTAGCTGCCACCTAGGCAGACGACAATAAAAGGAGTGACCACAGGGA-GCCAAAGAGCTGATC----CTAGGCATTTTCAACTTCCCACTTCCCTAGA----GCT---TTGCATGGTTGTATCTGATTTTATTTTCA-CCTGAGGCCCTAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30069802 562 + 172585720 CAGCTCTGGGCTTGAAGTAGCTGGTTCAAATATATCAAGACACCAGGACATCTGGGAAACCCAAATGGAGTTTCCATTTCCCGCCCTCTGCCCA-CCCCCTGCCTCTAATCCCCAGTTACCCCAGCAATGTACTATTAAAAATAGTA--TAACCACC----GCCTATTCCCTCTCCAAATACACCAGTCTCCCCTACCCACGCCTTAGGGGTTGTATTCACTCTCACTT---AACCCTTTCTCCTAGCCCAGCTGCCAGCCACATACCAACCTAATAGTCTCCACCATTCCATCCTCACTCAAAGGCATGACTTTTTCCCTTGATTGTCCAGAGGGGCTGAAGGAAAATACAAACAAGATCCACTCACCAATCCACTTATCTGTTTTGGACCAGGAAAGATCATCCTTCGTGCTGTCATAGTAGCCAATCTTCTTGTAGCTGCCACCTGGGCAGACGACAATAAAAGGAGTGACCACAGGGA-GCCAAAGAGCTGATC----CTAGGCATTTTCAACTTCCCACTTCCCT--A----GCT---TTGCATGGCTGTATCTGATTTTATTTTCA-CCTGAGGCCCTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29732641 562 - 170955103 CAGCTCTGGGCTTGAAGTAGCTGGTTCAAATATATCAAGACACCAGGACATCTGGGAAACCCAAATGGAGTTTCCATTTCCCGCCCTCTGCCCA-CCCCCTGCCTCTAATCCCCAGTTACCCCAGCAATGTACTATTAAAAATAGTA--TAACCACC----GCCTATTCCCTCTCCAAATACACCAGTCTCCCCTACCCACGCCTTAGGGGTTGTATTCACTCTCACTT---AACCCTTTCTCCTAGCCCAGCTGCCAGCCACATACCAACCTAATAGTCTCCACCATTCCATCCTCACTCAAAGGCATGACTTTTTCCCTTGATTGTCCAGAGGGGCTGAAGGAAAATACAAACAAGATCCACTCACCAATCCACTTATCTGTTTTGGACCAGGAAAGATCATCCTTCGTGCTGTCATAGTAGCCAATCTTCTTGTAGCTGCCACCTGGGCAGACGACAATAAAAGGAGTGACCACAGGGA-GCCAAAGAGCTGATC----CTAGGCATTTTCAACTTCCCACTTCCCT--A----GCT---TTGCATGGCTGTATCTGATTTTATTTTCA-CCTGAGGCCCTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2778055 562 -   2996164 CAGCTCTGGGCTTGAAGTAGCTGGTTCAAATATATCAAGACACCAGGACATCTGGGAAACCCAAATGGAGTTTCCATTTCCCGCCCTCTGCCCA-CCCCCTGCCTCTAATCCCCAGTTACCCCAGCAATGTACTATTAAAAATAGTA--TAACCACC----GCCTATTCCCTCTCCAAATACACCAGTCTCCCCTACCCACGCCTTAGGGGTTGTATTCACTCTCACTT---AACCCTTTCTCCTAGCCCAGCTGCCAGCCACATACCAACCTAATAGTCTCCACCATTCCATCCTCACTCAAAGGCATGACTTTTTCCCTTGATTGTCCAGAGGGGCTGAAGGAAAATACAAACAAGATCCACTCACCAATCCACTTATCTGTTTTGGACCAGGAAAGATCATCCTTCGTGCTGTCATAGTAGCCAATCTTCTTGTAGCTGCCACCTGGGCAGACGACAATAAAAGGAGTGACCACAGGGA-GCCAAAGAGCTGATC----CTAGGCATTTTCAACTTCCCACTTCCCT--A----GCT---TTGCATGGCTGTATCTGATTTTATTTTCA-CCTGAGGCCCTAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     531679 564 +    766320 CAGCTCTGGGCTTGAAGTAGCTGGTTCAAATATATCAAGACACCAGGACATCTGGGAAACCCAAATGGAGTTTCCATTTCCCGCCCTCTGCCCA-CCCCCTGCCTCTAATCCCCAGTTACCCCAGCAATGTACTATTAAAAATAGTA--TAACCACC----GCCTATTCCCTCTCCAAATACACCAGTCTCCCCTACCCACGCCTTAGGGGTTGTATTCACTCTCACTT---AACCCTTTCTCCTAGCCCAGCTGCCAGCCACATACCAACCTAATAGTCTCCACCATTCCATCCTCACTCAAAGGCATGACTTTTTCCCTTGATTGTCCAGAGGGGCTGAAGGAAAATACAAACAAGATCCACTCACCAATCCACTTATCTGTTTTGGACCAGGAAAGATCATCCTTCGTGCTGTCATAGTAGCCAATCTTCTTGTAGCTGCCACCTGGGCAGATGACAATAAAAGGAGTGACCACAGGGA-GCCAAAGAGCTGATC----CTAGGCATTTTCAACTTCCCACTTCCCTAGA----GCT---TTGCATGGCTGTATCTGATTTTATTTTCA-CCTGAGGCCCTAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28988528 564 -  71996105 CAGCTCTGGGCTTGAAGTAGCTGGTTCAAATATATCAAGACACCAGGACATCTGGGAAACCCAAATGGAGTTTCCATTTCCCGCCCTCTGCCCA-CCCCCTGCCTCTAATCCCCAGTTACCCCAGCAATGTACTATTAAAAATAGTA--TAACCACC----GCCTATTCCCTCTCCAAATACACCAGTCTCCCCTACCCACGCCTTAGGGGTTGTATTCACTCTCACTT---AACCCTTTCTCCTAGCCCAGCTGCCAGCCACATACCAACCTAATAGTCTCCACCATTCCATCCTCACTCAAAGGCATGACTTTTTCCCTCGATTGTCCAGAGGGGCTGAAGGAAAATACAAACAAGATCCACTCACCAATCCACTTATCTGTTTTGGACCAGGAAAGATCATCCTTCGTGCTGTCATAGTAGCCAATCTTCTTGTAGCTGCCACCTGGGCAGACGACAATAAAAGGAGTGACCACAGGGA-GCCAAAGAGCTGATC----CTAGGCATTTTCAACTTCCCACTTCCCTAGA----GCT---TTGCATGGCTATATCTGATTTTATTTTCA-CCTGAGGCCCTAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     164676 564 +    290775 CAGCTCTGGGCTTGAAGTAGCTGGTTCAAATATATCAAGACACCAGGACATCTGGGAAACCCAAATGGAGTTTCCATTTCCCGCCCTCTGCCCA-CCCCCTGCCTCTAATCCCCAGTTACCCCAGCAATGTACTATTAAAAATAGTA--TAACCACC----GCCTATTCCCTCTCCAAATACACCAGTCTCCCCTACCCACGCCTTAGGGGTTGTATTCACTCTCACTT---AACCCTTTCTCCTAGCCCAGCTGCCAGCCACATACCAACCTAATAGTCTCCACCATTCCATCCTCACTCAAAGGCATGACTTTTTCCCTTGATTGTCCAGAGGGGCTGAAGGAAAATACAAACAAGATCCACTCACCAATCCACTTATCTGTTTTGGACCAGGAAAGATCATCCTTCGTGCTGTCATAGTAGCCAATCTTCTTGTAGCTGCCACCTGGGCAGATGACAATAAAAGGAGTGACCACAGGGA-GCCAAAGAGCTGATC----CTAGGCATTTTCAACTTCCCACTTCCCTAGA----GCT---TTGCATGGCTGTATCTGATTTTATTTTCA-CCTGAGGCCCTAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2623129 564 -   3067355 CAGCTCTGGGCTTGAAGTAGCTGGTTCAAATATATCAAGACACCAGGACATCTGGGAAGCCCAAATGGAGTTTCCATTTCCCGCCCTCTGCCCA-CCCCCTGCCTCTAATCCCCAGTTACCCCAGCAATGTACTATTAAAAATAGTA--TAACCACC----GCCTATTCCCTCTCCAAATACGCCAGTCTCCCCTACCCACGCCTTAGGGGTTGTATTCACTCTCACTT---AACCCTTTCTCCTAGCCCAGCTGCCAGCCACATACCAACCTAATAGTCTCCACCATTCCATCCTCACTCAAAGGCATGACTTTTTCCCTTGATTGTCCAGAGGGGCTGAAGGAAAATACAAACAAGATCCACTCACCAATCCACTTATCTGTTTTGGACCAGGAAAGATCATCCTTTGTGCTGTCATAGTAGCCAATCTTCTTGTAGCTGCCACCTGGGCAGACGACAATAAAAGGAGTGACCACAGGGA-GCCAAAGAGCTGATC----CTAGGCATTTTCAACCTCCCACTTCCCTAGA----GCT---TTGCATGGCTGTATCTGATTTTATTTTCA-CCTGAGGCCCTAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30062261 560 + 171630274 CAGCCCTGGGCTTGAAGTAGCTGGTTCAAATATATCAAGACACCAGGACATCTGGGAAACCCAAAAGGAGTTTCCATTTCCCACCCTCTGTCCA-CCCCCTGCCTCTAATCCCCAGTTACCCCAGCAATGTGCTACTAAAAATAGTAC-TAACCACC----GCCTATTCCCTTTCCAAATACACCAGTCTCCCCTACCCACGCCTTTGGGGTTGTATTCACTCTTACTT---AACCCTTTCTCCTGGCCCAGCTGCCAGCCGCATTCCAGCCTAATGATCTCCACCATCCAATC----CTCAAATACATGACTATTTTCCTTGATTGTCCAGAGGGGCTGAAGAAAAATACAAACAGGATCCACTCACCAATCCACTTATCTGTTTTGGACCAGGAAAGATCATCCTTGGTGCTGTCATAGTAGCCAATCTTCTTGTAGCTGCCACCTGGGCAGATGACAATCAAACAAGTGACCACAGGGA-GCCAAAGAGCTGA-C----CCAGGCATTTTCAGCTTCCAACTTCCCTAGA----GCT---TTCCATGGCTGCATCTGATTTTATTTTCA-CCTGAGTCCCTAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           210438 560 -    242197 CAGCTCTGGGCTTGAAGTAGCTGGTTCAAATATATCAAGACACCAGGACATCTGGGAAACCCAAATGGAGTTTCCATTTCCCGCCCTCTGTCCA-CCCCCTGCCTCTAATCCCCAGTTACCCCAGCAATGTGCTACTAAAAATAGTAC-TAACCACC----GCCTATTCCCTTTCCAAATACACCAGTCTCCCCTACCCACGCCTTAGGGGTTGTATTCACTCTTACTT---AACCCTTTCTCCTGGCCCAGCTGCCAGCCACATTCCAGCCTAACGGTCTCCACCATCCCATC----CTCAAATACATGACTATTTTCCTTGATTGTCCAGAGGGGCTGAAGGAAAATACAAACAAGATCCACTCACCAATCCACTTATCTGTTTTGGACCAGGAAAGATCATCCTTGGTGCTGTCATAATAGCCAATCTTCTTGTAGCTGCCACCTGGGCAGATGACAATCAAACGAGTGACCACAGGAA-GCCAAAGAGCTGA-C----CCAGGCATTTTCAGCTTCCAACTTCCCTAGA----GCT---TTCCATGGCTGCATCTGATTTTATTTTCA-CCTGAGCCCCTAAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     203834 560 -   1771730 CAGCTCTGGGCTTGAAGTAGCTGGTTCAAATATATCAAGACACCAGGACATCTGGGAAACCCAAATGGAGTTTCCATTTCCCGCCCTCTGTCCA-CCCCCTGCCTCTAATCCCCAGTTACCCCAGCAATGTGCCACTAAAAATAGCAC-TAACCACC----GCCTATTCCCTTTCCAAATACACCAGTCTCCCCTACCCACGCCTTAGGGGTTGTATTCACTCTTACTT---AACCCTTTCTTCTGGCCCAGCTGCCAGCCACATTCCAGCCTAATGGTCTCCACCATCCCATC----CTCAAACACATGACTGTTTTCCTTGATTGTCCAGAGGGGCTGAAGGAAAATACAAACAAGATCCACTCACCAATCCACTTATCTGTTTTGGACCAGGAAAGATCATCCTTGGTGCTGTCATAGTAGCCAATCTTCTTGTAGCTGCCACCTGGGCAGATGACAATCAAACGAGTGACCACAGGGA-GCCAAAGAGCTGA-C----CCAGGAATTTTCAGCTTCCAACTTCCCTAGA----GCT---TTCCATGGCCGCATCTGATTTTATTTTCA-CCTGAGCCCCTAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     278182 560 -    457564 CAGCTCTGGGCTTGAAGTAGCTGGTTCAAATATATCAAGACACCAGGACATCTGGGAAACCCAAATGGAGTTTCCATTTCCCGCCCTCTGTCCA-CCCCCTGCCTCTAATCCCCAGTTACCCCAGCAATGTGCTACTAAAAATAGTAC-TAACCACC----GCCTATTCCCTTTCCAAATACACCAGTCTCCCCTACCCACGCCTTAGGGGTTGTATTCACTCTTACTT---AACCCTTTCTCCTGGCCCGGCTGCCAGTCACATTCCAGCCTAATGGTCTCCACCATCCCATC----CTCAAATACCTGACTATTTTCCTTGATTGTCCACAGGGGCTGAAGGAAAATACAAACAAGACCCACTCACCAATCCACTTATCTGTTTTGGACCAGGAAAGATCATCCTTGGTGCTGTCATAGTAGCCAATCTTCTTGTAGCTGCCACCTGGGCAGATGACAATCAAACAAGTGAACACAGGGA-GCCAAAGAGCTGA-C----CCAGGCATTTTCAGCTTCCAGCTTCCCTAGA----GCT---TTCCATGGCTGCATCTGATTTTATTTTCA-CCTGAGTCCCTAAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                92183 553 + 123392446 CAGCTCTAGGCTTGAAGTAGCTGGTTCAGGTGTATCCAGGCACCAAGACATCTAGGAAACCCAAATGGAGTTTCCGTTTCCCGCCCTCTGCCCA-CCCCCTGCCTCTAAT-CCCAGTTACCGCAGCAATGTACTATTAAAAATAGCAC-TGCCCACC----ACCTATTCCCTC-CCGATCACACCCATCTCCCCTACCCACGTCATGAGAGTTGCAGCCACTCT--CTT---AGCCCTTTCCCCTGGCCCAGCTCCCAGCCACATCCCAACCTAGCGGCCCCCAC--CTCCAGCCTCATTCAA-------ACTCTTTACCTAGATTGTTCACAGGGGATAAAGGAAAATAC-AGAAAGATCCACTCACCAATCCACTTATCCGTTCTAGACCAGGAAAGGTCATCCTTGGTGCTGTCATAGTAGCCAATCTTCTTGTAGCTGCCACCTGGGCAGACA-CAAT---AGAAGTGACCACAGGTA-GTAGAAGAGCCAATCCTAGCCAGACATCCTCAACTTCCCACTTCCCTAGA-GCTGCT---TTCCACGGCTGTATCTGATTTCATCTTCA-CCTGGGCCCCTGA-
i micMur3.chr6             I 412 I 31
s proCoq1.NW_012152574v1     586695 559 +    730504 CAGCTCTAGGCTTGAAGTAGCTGGTTCAGATGTATCCAGGCACCGGGACATCTGGGAAACCCAAATGGAGGTTCCATTTCCCCCCCTCTGCCCACCCCCCTGACTCTAAT-CCCAGTTACCACAGTAATGTACTATTAAAAATAGTGC-TGCCCACC----AGCTATTCCCTC-CCAAACACACCAGTCTCCTGTACCCACGTCTTG-GAGTTGTGGCCACTCT--CTT---AACCCTTTTCCCTGGCCCAGCTCCCAGCCACATTCCAACCTAGCGGCCCCCAC--CTCCAGCCTCACTCAAAGGCACTACTCTTTCCCTAGATTGTTCAGAGGGGCTGAAGGGAAATGC-AGCAGGATCCACTCACCGATCCACTTATCCGTCCTAGACCAGGAAAGATCATCCTTGGTGCTGTCATAGTAGCCAATCTTCTTGTAGCTGCCACCTGTGCAGACAGCAAC---AGAAGTGACCACAGGCA-GGGGAAGAGCCGATCCTAGCCAGACATTCTCAACTTCCCACTTCCCTAGA---TGCT---TTCCACGGCTGTATCTGATTTCATCTGCG-CCTGAGCCCCTCA-
i proCoq1.NW_012152574v1   C 0 I 1
s otoGar3.GL873550            98565 545 +  18854210 TAGCTCTAGGCTTGAAGTAGCTGGTTCAGATATATCAAGGCATCAGGACATCTGGGAAACCCAAAAGAAGTTTCCACTTCCCGCCCTCTGCCCA-CCCCCTACCACTAATCCCCAGTTATTGTAGCAATGTACTGTTAAAAATAGTAC-TGTCCACC----ACCTATTCCCTCTCCAAACACACC-ATCTCCCCTACCCACATCATG-GAATTGTATTAACTCT--CTCTTAAATCTTTCCCCTTGGCCCAGCTCCTGGCCACACTCCAACCTCATGGCCCCCACCACTCCACCCTCTTTTAAATGTACGACTCTTTTCCTTGATTGTTCAGAGAGACTGAAGGAAAATACAAACACGATCCACTTACCAATCCACTTATCCATTTTGGACCAGGAAAGATCATCCTTGGTGCTGTCATAGTAGCCAATCTTCTTGTAGCTGCCACCTGGACACATGACAAT---GGGAGTGACCTCAGGTA--------------------CC---CATTTTCAACTTTTCACTTCCCTAGA-GTTGCT---TTCCATAGTTGTATCTGATTTCTTCTTCA-CTTGAGCCCCTAA-
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57922251 473 -  94987271 -------GGACCTGAAGACCCTGGTTCTAACATATCAAGGTTGGATGAC-------------------AGCTTCCATTT------CTCTCAGCT-TCTGTTGCCTTTAAGTCCCACCCACTGAAGCAGAGCACTATTAAAAAAGAAGG-TAACCCCTG---GCCTGCTCCAGCTTCAC-----CCACTCACCTCTCCTCCCTTCTTGGGGGCTATGCTCACTCCC-------AATCCCTGCCCTAACCCCACCTTC------CATTTCCACCTAAAAG----CACCTTTCC----TCATTCAGATGTCTGACAAT-------GACTATTCGAAAGCACCGAAGAAGA---------------ACTCACCGATCCACTTGTCTGTTTTGGACCAGGAAAGATCATCCTTGGTGCTGTCGTAGTAGCCGATCTTCTTGTAGCTGCCGCCTGAGCAGAGGAC------AGGAGTTGCCGTGGGTA-----AGGA-----------GAAGACATTCTCAAGCTTCCATTACCCTCAAGGTTGCT---CTCCGTGGTTGCATATAATAGTATAT----AATAAGCAACTCAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26219215 496 +  26524999 CTACAC-AGGCCCAAAGTAGCTGGTTCTGATATATCAAGGTACCAGAACATCTGAGAAACCCAAAGAGCGTTTCCATGGCCACCCC---AGGCA-CCCCC-ACCTCCAATCCT--ATGACCTAAGCCATGAGCTGTTTTTACTAGTGCATTGCTACCATGTGCCTGCTCCTTCTCCAAATACAC--AGCTCCCCTACCCAGGT-----------------------CCT---AACCCCAAC-CCTGGCCCATCTCCCTGGCACATTTCAAACCCACGGCGCCCACCACCGTACCCTCGTGCACAGGCACAACCCTTCCCCT-GGTTGTTCACAGGCAGTGAAAGAAAATGCAAACAGGACCAGCTTACCAATCCATTTGTCCGTTTTAGACCAGGAAAGGTCATCCTTGGTGCTGTCATAGTAGCCGATCTTCTTGTAGCTGCCACCTG-GCAGA--ACAGGCAGAGGGGTG---------------AGGAGCTG-TG----CTGGGCGCT-----------AGCTTCCTGAA------------------CTGGGGCTGATTCTACCTCCACCCTGAGCCCCTGA-
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            26826 501 +    102524 CGGCTCCAAGCTTGAGGCAGCTGGTGCAGGTCTATCAAGGCACTGGGACATCTGGGAAACCCCAAGGGAGTTTCCCTTTCCCACTC-----CCA-CTCCC-----CCCATCCC--GTTACTCCAGCAATGTACTATTTTCAA-------TACCAACC----ACCTATTCTCGTTCCAAATACACCAGCCTCC-CTGTCCACGCCTTGGAGGCTCAGTTCACCCTTGTTT---AACCC-GGCCCCTGGCCCATCTCCCTGCCACAGCCC--------------------------CTCCTCCAAATGGATGGCCCTCT-CCTTGGCTGTTCAG-GGGGCCGAAGGCAGAGGT-GGCAGGACACACTCACCAATCCACTTATCAGTTTTGGACCAGGACAGATCGTCCTTGGTGCTGTCGTAGTAGCCGATCTTCTTGTAGCTGCCACCTGGGTGGGCGACAGT----GGGGTGACCGTGGGCAGGGCTGAGAACACATC----CCAGGTGTCCTCAGCTCCCCACTTCCC-AAA----GCCATGTTCTACGGTTGTGT-------------CA-CTCGAGCCCCGAA-
i dasNov3.JH582591         C 0 C 0

a score=398209.000000
s hg38.chr6_GL000254v2_alt   876523 31 +   4827813 GGATGCTTGGAAGGACCT----ACGAG-ACTCTTGA
s panTro5.chr6             29839191 31 + 175400573 GGATGCTTGGAAGGACCT----ACGAG-ACTCTTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30074016 31 + 173848474 GGATGCTTGGAAGGACCT----ACGAG-ACTCTTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5880297 31 +   6154872 GGATGCTTGGAAGGACCT----ACGAG-ACTCTTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74589130 31 + 122973662 GGATGCTTGGAAGGACCT----ATGAG-TCGCTTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30070364 31 + 172585720 GGATGCTTGGAAGGACCT----ACGAG-TCGCTTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29733203 31 - 170955103 GGATGCTTGGAAGGACCT----ACGAG-TCGCTTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2778617 31 -   2996164 GGATGCTTGGAAGGACCT----ACGAG-TCGCTTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     532243 31 +    766320 GGATGCTTGGAAGGACCT----ACGAG-TCACTTGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28989092 31 -  71996105 GGATGCTTGGAAGGACCT----ACGAG-TCGCTTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     165240 31 +    290775 GGACGCTTGGAAGGACCT----ACGAG-TCACTTGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2623693 31 -   3067355 GGATGCTTGAAAGGACCT----ACGAG-TTGCTTGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30062821 31 + 171630274 GGATGCTTGGAAGGACCT----ACAGG-TCGCTTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           210998 31 -    242197 GGATGCTTGGAAGGACCT----ACAGG-TCGCTTGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     204394 31 -   1771730 GGATGCTTGGAAGGACCT----ACGGG-TCGCTTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     278742 31 -    457564 GGATGCTTGGAAGGACCT----ACAGG-TTGCTTGA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     587255 31 +    730504 CCATGCTTGGACGGACCT----AGGGG-TCTCCTGA
i proCoq1.NW_012152574v1   I 1 C 0
s otoGar3.GL873550            99111 31 +  18854210 GGATGCTTGGAAAGGCAT----AGGGG-TCTCTTGA
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57922724 28 -  94987271 GGATGC-TGTAAGGACCC----A--AG-TCACCTGG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26219712 30 +  26524999 GGAC-CCTGGGAGGACCT----GAGGGCTCTCTTA-
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            27327 27 +    102524 --------GGCAGGACCTTCAGAGAGG-CTGCTTGA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                92736 31 + 123392446 I

a score=968551.000000
s hg38.chr6_GL000254v2_alt   876554 64 +   4827813 ATCAGCAACATGACTTAAAAGCAAT---ATAAGGTGGTTCCCaagacaactcaaataaataagaata---
s panTro5.chr6             29839222 64 + 175400573 ACCAGCAACATGACTTAAAAGCAAT---ATAAGGTGGTTCCCaagacaactcaaataaataagaata---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30074047 64 + 173848474 ACCAGCAACATGACTTAAAAGCAAT---ATAAGGTGGTTCCCaagacaactcaaataaataagaata---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5880328 64 +   6154872 ATCAGCAACATGACTTAAAAGCAAT---ATAAGGTGGTTCCCaagacaactcaaataaataagaata---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74589161 64 + 122973662 ATCAGCAACATGACTTAAAAGCAAT---ATAAGGTGGTTCCCaaggcaactcagataaataagacta---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30070395 64 + 172585720 ATCAGCAACATGACTTAAAAGCAAT---ATAAGGTGGTTCCCaaggcaactcaaataaataagaata---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29733234 64 - 170955103 ATCAGCAACATGACTTAAAAGCAAT---ATAAGGTGGTTCCCaaggcaactcaaataaataagaata---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2778648 64 -   2996164 ATCAGCAACATGACTTAAAAGCAAT---ATAAGGTGGTTCCCaaggcaactcaaataaataagaata---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     532274 64 +    766320 ATCAGCAACATGACTTAAAAGCAAT---ATAAGGTGGTTCCCaaggcaactcaaataaatgagaata---
i cerAty1.NW_012002711v1   C 0 I 698
s chlSab2.chr17            28989123 64 -  71996105 ATCAGCAACATGACTTAAAAGCAAT---ATAAGGTGGTTCCCAAGGCAACTCAAATAAATAAGAATA---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     165271 64 +    290775 ATCAGCAACATGACTTAAAAGCAAT---ATAAGGTGGTTCCCaaggcaactcaaataaataagaata---
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2623724 64 -   3067355 ATCAGCAACATGACTTAAAAGCAAT---ATAAGGTGGTTCCtaaggcaactcaaataaataagaata---
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30062852 67 + 171630274 ATCAGCAACATGACTTAAAAGCAATATAATAAGGTGGTTTCCaaggcaactcaagtaaataagaata---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           211029 64 -    242197 ATCAGCAACATGACTTAAAAGCAAT---ATaagatggttcccaaggcaactcaagtaaataagaata---
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     204425 67 -   1771730 ATCAGCAACATGACTTAAAAGCAATATAATAAGGTGGTTCCCaaggcaactcaagtaaataagaaaa---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     278773 67 -    457564 ATCAGCAACATGTCTTAAAAGCAATATAATAAGGTGGTTCCCaaggcaactcaagtaaataagaata---
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                92767 64 + 123392446 ATCAGCATCCTGACTCGAAAGCCAT---ACAAGGCAGTTCCCAAGGCAACTCAAGTAAATAAGAGTA---
i micMur3.chr6             I 31 I 3
s proCoq1.NW_012152574v1     587286 63 +    730504 -TCAGTGACCTGACTCCAAAGCCAC---ACAAGGCGGCTCCCAAGGCAACGCAAGTAAATAAGAACA---
i proCoq1.NW_012152574v1   C 0 I 3
s otoGar3.GL873550            99142 64 +  18854210 ATCGGTGAGCTGACTCAAAAGCCAT---ATGAGGCAGTTCCCAAGGCAACTCAAGTAAATAAGAATA---
i otoGar3.GL873550         C 0 I 3
s mm10.chr17               57922752 62 -  94987271 GTAGGCAACCTAAATCCACAGCAAC---ACAAGGTGATTCCCAAGGCAG--TAAGTATACATGAATA---
i mm10.chr17               C 0 I 41
s canFam3.chr35            26219742 49 +  26524999 GGCAGCCATCAGAC--------------ATAAAGTAGATCCCAAGGCAAT----GTAATACAGAACA---
i canFam3.chr35            C 0 I 3
s dasNov3.JH582591            27354 59 +    102524 GTCAACATCCTGCCTCAAAGGTAGG---AGCAGGTGGTTCCCAAGGCAACTCA--------AGAGTGGCT
i dasNov3.JH582591         C 0 C 0

a score=4681708.000000
s hg38.chr6_GL000254v2_alt   876618 287 +   4827813 tctatgtttaa-------aagtcttcagtgag-ga-ggctccaca---------------a--catgtctgccacc-tattcca-ttcctcacacctctctcggcgagat-gtctctcactttgattttggcttctaaagctttacacatatttctgcttattcttcctcTCATGAT---------------------GG--------GCAGGCTCTATTTT-------CCCAGTGGCTTTCAT------------TTTAATTTTAGAACATTCTCTTCTGTTGGCTTGGGTTTTAATTCCTTGGATAAGTTATATCTGCCTCTTAAAGCGCCATTGAGTAAAATTTGGTCATTTCTAAGATTT
s panTro5.chr6             29839286 287 + 175400573 tctatgtttaa-------aagtcttcagtgag-ga-ggctccaca---------------a--catgtctgccacc-tattcca-ttcctcacacctctctcggcgagat-gtctctcactttgattttggcttctaaagctttacacatatttctgcttattcttcctcTCATGAT---------------------GG--------GCAGGCTCTATTTT-------CCCAGTGGCTTTCAT------------TTTAATTTTAGAACATTCTCTTCTGTTGGCTTGGGTTTTAATTCCTTGGATAAGTTATATCTGCCTCTTAAAGCGCCATTGAGTAAAATTTGGTCATTTCTAAGattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30074111 287 + 173848474 tctatgtttaa-------aagtcttcagtgag-ga-ggctccaca---------------a--catgtctgccacc-tattcca-ttcctcacacctctctcggcgagat-gtctctcactttgattttggcttctaaagctttacacatatttctgcttattcttcctcTCATGAT---------------------GG--------GCAGGCTCTATTTT-------CCCAGTGGCTTTCAT------------TTTAATTTTAGAACATTCTCTTCTGTTGGCTTGGGTTTTAATTCCTTGGATAAGTTATATCTGCCTCTTAAAGCACCATTGAGTAAAATTTGGTCATTTCTAAGattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5880392 286 +   6154872 tctatgtttaa-------aagtcttcagtgag-ga-ggctccaca---------------a--catgtctgccacc-tattcca-ttcctcacacctctctcggcgagat-gtctctcactttgattttggcttctaaagctttacacatatttctgcttattcttcctcTCATGAT---------------------GG--------GCAGGCTCTATTTT--------CCAGTGGCTTTCAT------------TTTAATTTTAGAACATTCTCTTCTGTTGGCTTGGGTTTTAATTCCTTGGATAAGTTATATCTGCCTCTTAAAGCGCCATTGAGTAAAATTTGGTCATTTCTAAGATTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74589225 287 + 122973662 tctatgtttaa-------aagtcttcagtgag-ga-ggctccaca---------------a--tatgtctgccacc-tattcca-ttcctcacacctctctcggcgagat-gtctctcactttgattttggcttctaaagctttacacatgtttctgcttattcttcctcTCATGAT---------------------AG--------GCAGGCTCTATTTT-------CCCAGTGGCTTTCAT------------TTTAATTTTAGAACATTCTCTTCCGTTGGCTTGGGTTTTAATTCCTTGGATAAGTTATATCTGCCTCTTAAAGCGCCATTGAGTAAAATTTGGTCATTTCTAAGATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30070459 287 + 172585720 tctatgtttaa-------aagtcttcagtgag-ga-ggctccaca---------------a--catgtctgccacc-tattcca-ttcctcacacctctctcggcgagat-gtctctcactttgattttggcttctaaagctttacacatatttctgcttatttttcctcTCATGAT---------------------GG--------GCAGGCTCTATTTT-------CCCAGTGGCTTTCAT------------TTTACTTTTAGAACATTCTCTTCCGTTGGCTTAGGTTTTAATTCCTTGGATAAGTTATATCTGCCTCTTAAAGCGCCATTGAGTAAAATTTGGTCACTTCTAAGATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29733298 287 - 170955103 tctatgtttaa-------aagtcttcagtgag-ga-ggctccaca---------------a--catgtctgccacc-tattcca-ttcctcacacctctctcggcgagat-gtctctcactttgattttggcttctaaagctttacacatatttctgcttattcttcctcTCATGAT---------------------GG--------GCAGGCTCTATTTT-------CCCAGTGGCTTTCAT------------TTTAATTTTAGAACATTCTCTTCCGTTGGCTTAGGTTTTAATTCCTTGGATAAGTTATATCTGCCTCTTAAAGCGCCATTGAGTAAAATTTGGTCACTTCTAAGATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2778712 287 -   2996164 tctgtgtttaa-------aagtcttcagtgag-ga-ggctccaca---------------a--catgtctgccacc-tattcca-ttcctcacacctctctcggcgagat-gtctctcactttgattttggcttctaaagctttacacatatttctgcttattcttcctcTCATGAT---------------------GG--------GCAGGCTCTATTTT-------CCCAGTGGCTTTCAT------------TTTAATTTTAGAACATTCTCTTCCGTTGGCTTAGGTTTTAATTCCTTGGATAAGTTATATCTGCCTCTTAAAGCGCCATTGAGTAAAATTTGGTCACTTCTAAGATTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     533036 287 +    766320 tctatgtttaa-------aagtcttcagtgag-ga-ggctccaca---------------a--catgtctgccacc-tattcca-ttcctcacacctctctctgcgagat-gtctctcactttgattttggcttctaaagctttacacatatttctgcttattcttcctcTCATGAT---------------------GG--------GCAGGCTCTATTTT-------CCCAGTGGCTTTCAT------------TTTAATTTTAGAACATTCTCTTCCGTTGGCTTAGGTTTTAATTCCTTGGATAAGTTATATCTGCCTCTTAAAGCGCCATTGAGTAAAATTTGGTCACTTCTAAGATTT
i cerAty1.NW_012002711v1   I 698 C 0
s chlSab2.chr17            28989187 287 -  71996105 TCTATGTTTAA-------AAGTCTTCAGTGAG-GA-GGCTCCACA---------------A--CATGTCTGCCACC-TATTCCA-TTCCTCACACCTCTCTCGGCGAGAT-GTCTCTCACTTTGATTTTGGCTTCTAAAGCTTTACACATATTTCTGCTTATTCTTCCTCTCATGAT---------------------GG--------GCAGGCTCTATTTT-------CCCAGTGGCTTTCAT------------TTTAATTTTAGAACATTCTCTTCCGTTGGCTTAGGTTTTAATTCCTTGGATAAGTTATATCTGCCTCTTAAAGCGCCATTGAGTAAAATTTGGTCACTTCTAAGATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     165335 287 +    290775 tctatgtttaa-------aagtcttcagtgag-ga-ggctccaca---------------a--catgtctgccacc-tattcca-ttcctcacacctctctctgcgagat-gtctctcactttgattttggcttctaaagctttacacatatttctgcttattcttcctcTCATGAT---------------------GG--------GCAGGCTCTATTTT-------CCCAGTGGCTTTCAT------------TTTAATTTTAGAACATTCTCTTCCGTTGGCTTAGGTTTTAATTCCTTGGATAAGTTATATCTGCCTCTTAAAGCGCCATTGAGTAAAATTTGGTCACTTCTAAGATTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2623788 287 -   3067355 tctatgtttaa-------aagtcttcagtgag-ga-ggctccaca---------------a--catgtctgccacc-tattcca-ttcctcacacctctctcggtgagat-gtctctcactttgattttggcttctaaagctttacacatatttctgcttattcttcctcTCATGAT---------------------GG--------GCAGGCTCTATTTT-------CCCAGTGGCTTTCAT------------TTTAATTTTAGAACATTCTCTTCCGTTGGCTTGGGTTTTAATTCCTTGGATAAGTTATATCTGCCTCTTAAAGCGCCATTGAGTAAAATTTGGTCACTTCTAAGATTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30062919 287 + 171630274 tctatgtttaa-------aaatcttcagtgag-ga-ggctcccca---------------a--catgtctgccacc-tattcca-ttcctcacacctctctcggtgagAT-GTCTCTCACTTTGATTTTGGCTTCCAAAGCTTTACACATATTTCTGCTTATTCTCCCTCTCATGAT---------------------GG--------GCAGGCTCTATTTT-------CCCGGTGGCTTTCAT------------TTTAATTTTAGAACATTCTCTTCCATTGGCTTGGGTTTTAATTCCTTGGATAAGTTATATCTGCCTCTTAAAGAGCCATTAAGTAAAATTTGGTCACTTCTAAGAATT
i calJac3.chr4             C 0 I 1209
s saiBol1.JH378357           211093 287 -    242197 tctatgtttaa-------aagtcttcagtgaa-ga-ggctcccca---------------a--catgtctgccacc-tattcca-ttcctcacacctctctcggctagat-gtctctcactttgattttggcttctaaagctttacacatatttctgcttattctccctcTCATGAT---------------------GG--------GCAGGCTCTATTTT-------CCCAGTGGCTTTTAT------------TTTAATTTTAGAACATTCTCTTCCATTGGCTTGGGTTTTAATTCCTTGGATAAGTCATATCTGCCTCTTAAAGAGCCATTAAGTAAAATTTGGTCACTTCTAAGattt
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     204492 308 -   1771730 tctatgtttaa-------aagtcttcagtgag-ga-ggctcccca---------------a--catgtctgccacc-tattcca-ttcctcacacctctcTCGGCGAGAT-GTCTCTCACTTTGATTTTGGCTTCTAAAGCTTTACACATATTTCTGCTTATTCTCCCTCTCATGATGGGCAGGCTCTGCTTTCCCAGGG--------GCAGGCTCTGTTTT-------CCCAGTGGCTTTCAT------------TTTAATTTTAGAACACTCTCTTCCATTGGCTTGGGTTTTAATTCCTTGGATAAGTTATATCTGCCTCTTAAAGAGCCATTAAGTAAAATTTGGTCACTTCTAAGATTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     278840 286 -    457564 tctatgttaaa-------aagtcttcagtgag-ga-ggctcccca---------------a--catgtctgccacc-tattcca-ttcctcacacctctcTCGGCGAGAT-GTCTCTCACTTTGATTTTGGCTTCTAAAGCTTTACACATA-TTCTGCTTATTCTCCCTCTCATGAC---------------------GG--------GCAGGCTCTGTTTT-------CCCAGGGGCTTTCAT------------TTTAATTTTAGAACATTATCTTCCATTGGCTTGGGTTTTAATTCCTTGGATAAGTTATATCTGCCTCTTAAGGAGCCATTAAGTAAAATTTGGTCACTTCTAAGAATT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                92834 286 + 123392446 CATATGTTTAA-------AACTCTTCCGTGA--GA-AGCTGCACA---------------G--TACACCTGCCGCC-TGTTCCATTTCCTCGCACCTCTTTTGGCAAGAT-GTCTCTCGCTTTGATTCTGGCTTCTTAAGCTTTAAAC-TCTTTCTGGTTATCCTCTTTCTCATGAT---------------------GG--------ACAGGATCTATTTT-------CCCAGTGGCTTTCAT------------TTTAACTTTAGAAATTTCTGTTCCGTTGGCTTGGGTTCTAATTCCTTGGATAAGTTACAGCTGGCTCTTAAAGAGCCACTAAGTAAAATTCAGTCACTTCTAAGattt
i micMur3.chr6             I 3 C 0
s proCoq1.NW_012152574v1     587352 287 +    730504 TGCATGTTTGA-------AACTCTTCCACAG--GA-AGCTGCACA---------------G--TGCGTCTGCCACC-TATTTCACTTCCTCGCACCTCTTCCGGCAAGAT-GTCTCTCGCTTTGATTTTGGCTTCTTAAGCTTTAAACATCTTTCTGGTTATCCTCCTTCTCATGAT---------------------GG--------ACAGGATCTATTTT-------CCCAGTGGCTTTCAT------------TTTAACTTTAGAAATTTCTCTTCCATTGGCTTGGTTTCTAATTCCTTGGATAAGTTACATCTGCCTCTTAAAGAGCCACTAAGTAAAATTCAGTCACTTCTAAGATTT
i proCoq1.NW_012152574v1   I 3 C 0
s otoGar3.GL873550            99209 285 +  18854210 TATATGTTTAA-------AACTCTTCAGTGA--GA-AGCTGCACA---------------G--TATGTCTGCCACCTTATTCCACTTCCTCACACCTCTTTCAGCAAGAT-GTCTCTCACTTTGATTCTGGCTTCTTAAGCTTTACA--TGTTTCTGCTTATTCTCCCTCTCATGAT---------------------GG--------ACAAGATCTGTTTT-------CCCAGTGGCTTTCAT------------TTTAATTTTAGAAACATATCTTCCATTGGCTTGGGTTCTAATTCCTTGGATAAGTTACATCTGCCTCTTAAAGAACCACT-AGTAAAATTCAGTCACTTCCAACTTTT
i otoGar3.GL873550         I 3 C 0
s mm10.chr17               57922855 312 -  94987271 TATATGAATAAGTAATATAACCCTTAAGCATGTGA-GGCTCCACAGTGGAAGGCACCGTGG--CGCGTCTACCACA-TCTTCTACTGCCTCACACCTCTCCCAGCAACAC-GTCTCTC------------GCTTCCAAAGCTTTAAACA-ATTTCTGCCTGTTCTCCCTCTTATGAT---------------------GGACA-GATTGCAGGATCCGCCCCCCCCACCCCCACCCCCTGTGGC------------TTTAATTTTAGAACCCTCTCTCCCTTTGGCTTGGGTTCTAATGCCTTGGAGAAGATACATCTGCCTCTTAAAGTACAAGGCAGTAAAAGGCAGTCACTCCTAAGGTGT
i mm10.chr17               I 41 I 1
s canFam3.chr35            26219794 294 +  26524999 TGTAGGGTTAG-------AG---CCCAGTGGA-GAGGGTTCCACG---------------GGTCGGGTGTGCTATC----CCCC-AGCCTTGCGCCTCTCTTGGTG-GTC-ATCTCGCACTTCGATTCTGGTGTCTAAAGCTTTCAGAGTG--CCTGCTTATTCTCCCTCTCATGAC---------------------AG----AATCACAGGGTCTATTTT-------CCCAGAATCTTTCATTTAAATAAAGAGTTTAATTTTAGAACTTTATTTTCGATTGGCTTGGGTTCTGATTCCTTGGA-AAGTTGCATCTGCCTTTTGGAG--CCACGAGGCGAAATTCAGCCACTGCTAAGATTC
i canFam3.chr35            I 3 C 0
s dasNov3.JH582591            27413 270 +    102524 TCTGTGTTCAA-------A--CCTTCCGTGAA-GG-------------------------C--------TGCCACC-CGCCCCG-CGTCTCACACCTCCCT--GCAAGATCATCTCCCGTGTTGAATCTTGCT-------CCTTTAACACATTTCTGCTTGTTCTCCCTCTCATCGC---------------------AGACAGAATCACAGGATCTATTTT-------CCCAGTGGCTTTCAT------------TTTAATTTTAGAGATTTCTCTTCCATTGGCTTAGGCTCTAATTCCTTGGATAAGTTAAATCTGCCCCTCAAAGAGCTCCCAAGTGAAATGCAGTCACTCCTAAGATTT
i dasNov3.JH582591         C 0 C 0

a score=2501536.000000
s hg38.chr6_GL000254v2_alt   876905 158 +   4827813 CTGTTCTA-----GAACTGTTTCCGTTACCATAACTTTTCCTTCAAAAGCCAACTCAC-ACTCCTTTCACCATGGCTGAAGTCCATTTCCTCTTGTCCTGGATACAAAGAG----GAGCTGAAAG----------------------------------------------------------------------------------------------------GAT----------------GT-GGAGGT-GGGGAGAAAGGAAG-AAAGAAACTTTTCACAGG
s panTro5.chr6             29839573 158 + 175400573 ctgttcta-----gaactgtttccgttaccataagtcttccttcaaaagccaactcac-actcctttcaccatggctgaagtccatttcctcttgtcctgGATACAAAGAG----GAGCTGAGAG----------------------------------------------------------------------------------------------------GAT----------------GT-GGAGGT-GGGGAGAAAGGAAG-AAAGAAACTTTTCACAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30074398 158 + 173848474 ctgttcta-----gaactgtttccgttaccataagtcttccttcaaaagccaactcac-actcctttcaccatggctgaagtccatttcctcttgtcctgGATACAAAGAG----GAGCTGAGAG----------------------------------------------------------------------------------------------------GAT----------------GT-GGAGGT-GGGGAGAAAGGAAG-AAAGAAACTTTTCACAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5880678 158 +   6154872 CTGTTCTA-----GAACTGTTTCCGTTACCATAACTTTTCCTTCAAAAGCCAACTCAC-ACTCCTTTCACCATGGCTGAAGTCCATTTCCTCTTGTCCTGGATACAAAGAG----GAGCGGAGAG----------------------------------------------------------------------------------------------------GAT----------------GT-GGAGGT-GGGGAGAAAGGAAG-AAAGAAACTTTTCACAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74589512 158 + 122973662 CTGTTCTA-----GAACTGTTTCCGTTACCATAACTTTTCCTTCAAAAGCCAACTCAC-ACTCCTTTCACCATGGCTGAAGTCCATTTCCTCTTGTCCTGGATACAAAGAG----GAGCTGAGAG----------------------------------------------------------------------------------------------------GAT----------------GT-GGAGGT-GGGGAGAAAGGAAG-AAAGAAACTTTTCACAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30070746 158 + 172585720 CTGTTCTA-----GAACTGTTTCCGTTACCATAACTTTTCCTTCAAAAGCCAACTCAC-ACTCCTTTCACCATGGCTGAAGTCCACTTCCTCTTGTCCTGGATACAAAGAG----GAGCTGAGAG----------------------------------------------------------------------------------------------------GAT----------------GT-GGAGGT-GGGGAGAAAGGAAG-AAAGAAACTTTTCACAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29733585 158 - 170955103 CTGTTCTA-----GAACTGTTTCCGTTACCATAACTTTTCCTTCAAAAGCCAACTCAC-ACTCCTTTCACCATGGCTGAAGTCCACTTCCTCTTGTCCTGGATACAAAGAG----GAGCTGAGAG----------------------------------------------------------------------------------------------------GAT----------------GT-GGAGGT-GGGGAGAAAGGAAG-AAAGAAACTTTTCACAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2778999 158 -   2996164 CTGTTCTA-----GAACTGTTTCCGTTACCATAACTTTTCCTTCAAAAGCCAAGTCAC-ACTCCTTTCACCATGGCTGAAGTCCACTTCCTCTTGTCCTGGATACAAAGAG----GAGCTGAGAG----------------------------------------------------------------------------------------------------GAT----------------GT-GGAGGT-GGGGAGAAAGGAAG-AAAGAAACTTTTCACAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     533323 158 +    766320 CTGTTCTA-----GAATTGTTTCCGTTACCATAACTTTTCCTTCAAAAGCCAACTCAC-ACTCCTTTCACCATGGCTGAAGTCCACTTCCTCTTGTCCTGGATACAAAGAG----GAGCTGAGAG----------------------------------------------------------------------------------------------------GAT----------------GT-GGAGGT-GGGGAGAAAGGAAG-AAAGAAACTTTTCACAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28989474 158 -  71996105 CTGTTCCA-----GAACTGTTTCCATTACCATAACTTTTCCTTCAAAAGCCAACTCAC-ACTCCTTTCACCATGGCTGAAGTCCACTTCCTCTTGTCCTGGATACAAAGAG----GAGCTGAGAG----------------------------------------------------------------------------------------------------GAT----------------GT-GGAGGT-GGGGAGAAAGGAAG-AAAGAAACTTTTCACAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     165622 258 +    290775 CTGTTCTA-----GAATTGTTTCCGTTACCATAACTTTTCCTTCAAAAGCCAACTCAC-ACTCCTTTCACCATGGCTGAAGTCCACTTCCTCTTGTCCTGGATACAAAGAG----GAGCTGAGAGGATGTGGAGGTGGGGAGAAAGGAAGAAAGAAACTTTTCACAGGAGGCCAAGAAATAGCTCTCCCTGTCTCTTATACACATCTAGATGTGTATAAGAGACAGAT----------------GT-GGAGGT-GGGGAGAAAGGAAG-AAAGAAACTTTTCACAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624075 158 -   3067355 CTGTTCCA-----GAACTGTTTCCGTTACCATAACTTTTCCTTCGAAAGCCAACTCAC-ACTCCTTTCACCATGGCTGAAGTCCACTTCCTCTTGTCCTGGATACAAAGAG----AAGCTGAGAG----------------------------------------------------------------------------------------------------GAT----------------GT-GGAGGT-GGGGAGAAAGGAAG-AAAGAAACTTTTCACAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30064415 160 + 171630274 CTGCTCTA-----GAACTGTTTCTGTTACCATAACTTTCCTTCAAAAAGCCAACTCACAACTCTTTTCGTGTGGACTGAAGTCCATTTCCTCCTGTCCTGGATACAAAGAG----GAGCTGAGAG----------------------------------------------------------------------------------------------------GAT----------------GT-GGAGGT-GGGGAGAAAGGAAGAAAAGAAACTTTTCACAGG
i calJac3.chr4             I 1209 C 0
s saiBol1.JH378357           211380 158 -    242197 ctgttcta-----gaactgtttctgtcaccataacttttccttcaaaagccaactcac-gctcctttcattgtggctgaagtccatttcctcttgtcctgGATACAAAGAG----GAGCTGAGAG----------------------------------------------------------------------------------------------------GAT----------------GT-GGAGGT-GGGGAGAAAGGAAG-AAAGAAACTTTTCACAGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     204800 158 -   1771730 CTATTCTA-----GAACTGTTTCTGTTACCACAACTTTTCCTTCAAAAGCCAACTCAC-ACTCCTTTCATTGTGGCTGAAGTCCATTTCCTCTTGTCCTGGATACAAAGAG----GAGCTGAGAG----------------------------------------------------------------------------------------------------GAT----------------GT-GGAGGT-GGGGAGAAAGGAAG-AAAGAAACTTTTCACAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279126 158 -    457564 Ctgttcta-----gaactgtttctgttaccagagcttttccttcaaaagccaactcac-actcctttcactgtggctgaagtccatttcctcttgtcctgGATACAAAGAG----GAGCTGAGAG----------------------------------------------------------------------------------------------------GAT----------------GT-GGAGGT-GGGGAGAAAGGAAG-AAAGAAACTTTTCACAGG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                93120 159 + 123392446 ctgttcta-----caactgtcccagttaccataacttttccttcaaaagccaactcac-a-ccctttcaccatggctgaagtccatttcctcttgtcctggatacaaagaa----gagctgAAAG----------------------------------------------------------------------------------------------------GAT----------------GTGGGAGGTAGGGAAGAGGGAAAG-AAAGAAACCTTTCACAGG
i micMur3.chr6             C 0 I 549
s proCoq1.NW_012152574v1     587639 158 +    730504 CTGTTCTA-----GAACTGTCCCAGTTACCGTAACTTTTCCTTCAAAAGCCAACTCAC-A-CCCTTTCACCATGGCTGAAATCCATTTCCTCTTGTCCTGGATACAAAGAA----GAGCTGAGAG----------------------------------------------------------------------------------------------------GAT----------------GTGGGAGGT-GGGGAGAAAGGAAG-AAAGAAACTTTTCACAGG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            99494 159 +  18854210 CTGTTCTA-----GAACTGTCCTAGTTGCCCTAACTTTTTCTTCAACAGCCAACTCGC-ACCCCTTTCACCATGGCTGAAGTCCATTTCCTCTTGTCCTGGATACAAAGAA----GAGCTGAGAG----------------------------------------------------------------------------------------------------GAT----------------GTGGGAGGT-AGGGAGAGGGGAAG-AAAGAAACTTTTCACAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57923168 172 -  94987271 TCTTTGCA-----GAATGGCCACAGTTAATACAACTTTCCTTCCAAACGCCATCTCAC-ACCCACTTCGCCCTGGCTGAAGTCCAGCCTCACTTGTCCCATATACAAAGA-----GAGCTGAGAG----------------------------------------------------------------------------------------------------GATTTGGTGGCAGACGTTGGT-GGGGGG-AGGGAGGGAGGGAG-AAAGAAACTTTTCCCAG-
i mm10.chr17               I 1 C 0
s canFam3.chr35            26220088  92 +  26524999 -----CCA-----GTGA----CCAGTGACCATAACTGTTCCCTCTGAAGCCACCCCAC-A---------------------------ACCTCCAGTCTGGGTTACAGAGAGACCTGTGCCCACAG----------------------------------------------------------------------------------------------------CAC----------------CC-TAGG------------------------------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            27683 164 +    102524 GTGTCCTAGGAGTGAGCTGTGCTGGCTTCCATAACTTCTCCCTCAAGAGCCAAGTCAC-ACTCCTCTCCCGGTGGCTGAAGTCCATTTCCTCTTATCCTCGATACAAAGAA----GGTCTGAGAA----------------------------------------------------------------------------------------------------GAT----------------GTGGGAGGT-AGGGAGAATGGAAG-ACAGAAACTTTTCACAGG
i dasNov3.JH582591         C 0 C 0

a score=171738.000000
s hg38.chr6_GL000254v2_alt   877063 10 +   4827813 AGGCCAAGAA
s panTro5.chr6             29839731 10 + 175400573 AGGCCAAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30074556 10 + 173848474 AGGCCAAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5880836 10 +   6154872 AGGCCAAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74589670 10 + 122973662 AGGCCAAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30070904 10 + 172585720 AGGCCAAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29733743 10 - 170955103 AGGCCAAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779157 10 -   2996164 AGGCCAAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     533481 10 +    766320 AGGCCAAGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28989632 10 -  71996105 AGGCCAAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     165880 10 +    290775 AGGCCAAGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624233 10 -   3067355 AGGCCAAGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30064575 10 + 171630274 AGGCCAAGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           211538 10 -    242197 AGGCCAAGAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     204958 10 -   1771730 AGGCCAAGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279284 10 -    457564 AGGCCAAGAA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     587797 10 +    730504 TAGCCAAGAA
i proCoq1.NW_012152574v1   C 0 I 46
s otoGar3.GL873550            99653 10 +  18854210 TGGCCAAGAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57923340 10 -  94987271 AGGCTAAGAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26220180  7 +  26524999 AGGCCAA---
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            27847 10 +    102524 AGGCCAAGAA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                93279 549 + 123392446 I

a score=527956.000000
s hg38.chr6_GL000254v2_alt   877073 47 +   4827813 ATAGCTCTCTTGGCCATG-CCGTAAAAGACTGAGAGCCGAGTGGAGCA
s panTro5.chr6             29839741 47 + 175400573 ATAGCTCTCTTGGCCACG-CCGTAAAAGACTGAGAGCCGAGTGGAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30074566 47 + 173848474 ATAGCTCTCTTGGCCACG-CCGTAAAAGACTGAGAGCCGAGTGGAGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5880846 47 +   6154872 ATAGCTCTCTTGGCCATG-CCGTAAAAGACTGAGAGCCGAGTGGAGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74589680 46 + 122973662 ATAGCTCTCTT-GCCATG-CCGTAAAAGACTGAGAGCCGAGTGGAGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30070914 47 + 172585720 ATAGCTCTCTTGGCCATG-CCGTAAAAGACTGAGAGCTGGGTGGAGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29733753 47 - 170955103 ATAGCTCTCTTGGCCATG-CCGTAAAAGACTGAGAGCTGGGTGGAGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779167 47 -   2996164 ATAGCTCTCTTGGCCATG-CCGTAAAAGACTGAGAGCTGGGTGGAGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     533491 47 +    766320 ATAGCTCTCTTGGCCATG-CCGTAAAAGACTGAGAGCTGGGTGGAGCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28989642 47 -  71996105 ATAGCTCTCTTGGCCATG-CCGTAAAAGACTGAGAGCTGGGTGGAGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     165890 45 +    290775 ATAGCTCTCTTGGCCATG-CCGTAAAAGAC--AGAGCTGGGTGGAGCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624243 47 -   3067355 ATAGCTCTCTTGGCCATG-CCGTAAAAGACTGAGAGCCGGGTAGAGCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30064585 47 + 171630274 ATAGCTCTCTTGGCCATG-CTGTGAAAGACTGAGAGTGGAGTGGAGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           211548 47 -    242197 ATAGCTCTCTTGGCCATG-CTGTAAAAGACTGAGAGTGGAGTGGAGTA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     204968 47 -   1771730 ATAGCTCTCTTGGCCATG-CTATAAAAGACTGAGAGTGGAGTGGAGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279294 47 -    457564 ATAGCTCTCTTGGCCATG-CTGTAAAAGACTGAGAGTGGAGTGGAGTA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            99663 45 +  18854210 ATGACTTTCTTGGCCGTG-CCAGAAAATGCTAAGTG--GGGTAGACTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57923350 46 -  94987271 ATGGGTCTCTTGGCCACACCCACAAGAGGCTAA--GTCAGGTGGAACG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26220187 12 +  26524999 -------------------------------CAGGGGTGTGTG-----
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            27857 47 +    102524 ATGGCTCTCTTGGCCGGG-CCAGGAAAGGCCGACAGTGGGGTGGAGTT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                93279 549 + 123392446 I
e proCoq1.NW_012152574v1     587807 46 +    730504 I

a score=500741.000000
s hg38.chr6_GL000254v2_alt   877120 32 +   4827813 GAAAAATTAACTCCTAGAAGTTCTGCAAATAC
s panTro5.chr6             29839788 32 + 175400573 GAAAAATTAACTCCTAGAAGTTCTGCAAATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30074613 32 + 173848474 GAAAAATTAACTCCTAGAAGTTCTGCAAATAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5880893 32 +   6154872 GAAAAATTAACTCCTAGAAGTTCTGCAAATAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74589726 32 + 122973662 GAAAAATTAACTCCTAGAAGTTCTGCAGATAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30070961 32 + 172585720 GAAAAATTAACTCCTAGAAGTTCTGCAAATAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29733800 32 - 170955103 GAAAAATTAACTCCTAGAAGTTCTGCAAATAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779214 32 -   2996164 GAAAAATTAACTCCTAGAAGTTCTGCAAATAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     533538 32 +    766320 GAAAAATTAACTCCTAAAAGTTCTGCAAATAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28989689 32 -  71996105 GAAAAATTAACTCCTAGAAGTTCTGCAAATAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     165935 32 +    290775 GAAAAATTAACTCCTAAAAGTTCTGCAAATAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624290 32 -   3067355 GAAAAATTAACTCCTAGAAGTTCTGCAAATAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30064632 32 + 171630274 GAAAAATTAACTCCTAGAAGTTCTGCAAATAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           211595 32 -    242197 GAAAAATTAACTCCTAGAGGTTCTGCAAATAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205015 32 -   1771730 GAAAAATTAACTCCTAGAAGTTCTGCAAATAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279341 30 -    457564 GAAAAATTAACTCCTAGAAGTTCTGCAA--AT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     587853 32 +    730504 GAAAAATTAACTCATGGAAGTTCTGCAAATAC
i proCoq1.NW_012152574v1   I 46 I 467
s otoGar3.GL873550            99708 32 +  18854210 GAAAAATTAACTCATTGAAGTTCGGCAAATGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57923396 32 -  94987271 GAAGGATTAACTCACAGTAGGTCTGCAGACTC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26220199 32 +  26524999 CACAGATTGACTCTTGGAAGCTTGGCAAATAC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            27904 32 +    102524 GGAAGATTAACTCATTGCAGTTTAGCAAATGC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                93279 549 + 123392446 I

a score=954335.000000
s hg38.chr6_GL000254v2_alt   877152 111 +   4827813 CT--GTGTGCTAAGTTTCAAGAA-AATACAATCT-----ACAAAAGCCAAGC--TATAC-----------ACATT----GAAGC----------------------------------TTT---ACACA-GCAAGGAAATTTGGC-AGATTC--CCTTAAA---------AAAAAAATAGC----------GGTTC
s panTro5.chr6             29839820 105 + 175400573 CT--GTGTGCTAAGTTTCAAGAA-AATACAATCT-----ACAAAAGCCAAG-------C-----------ACATT----GAAGC----------------------------------TTT---ACACA-GCAAGGAAATTTGGC-AGATTC--CCTT-AA---------AAAAAAATAGC----------GATTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30074645 109 + 173848474 CT--GTGTGCTAAGTTTCAAGAA-AATACAATCT-----ACAAAAGCCAAGC--TATAC-----------ACATT----GAAGC----------------------------------TTT---ACACA-GCAAGGAAATTTGGC-AGATTC--CCTT--A---------AAAAAAATAGC----------GGTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5880925 110 +   6154872 CT--GTGTGCTAAGTTTCAAGAA-AATACAATCT-----ACAAAAGCCAAGC--TATAC-----------ACATT----GAAGC----------------------------------TTT---ACACA-GCAAGGAAATTTGGC-AGATTC--CCTT-AA---------AAAAAAATAGC----------GGTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74589758 110 + 122973662 CT--GTGTGCTAAGTTTCAAGAA-AATACAATCT-----ACAGAAGCCAAGC--TATAC-----------ACATT----GAAGC----------------------------------TTT---ACACA-GCAAGGAAATTTGGC-AGATTG--CCTT-AA---------AAAAAAATAGC----------GGTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30070993 129 + 172585720 CTAAGTGTGCTAAGTTTCAAGAA-AATACAATCT-----ACAAAAGCCAAGC--TATAC-----------ACACT----GAAGAT----AAATTAGAAATGAT-------------AGTTT---ACACA-GCAAGGAAATTTGGC-GTATTC--CCTT-AA---------AAAAAAGTAGC----------AGTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29733832 129 - 170955103 CTAAGTGTGCTAAGTTTCAAGAA-AATACAATCT-----ACAAAAGCCAAGC--TATAT-----------ACACT----GAAGAT----AAATTAGAAATGAT-------------AGTTT---ACACA-GCAAGGAAATTTGGC-GTATTC--CCTT-AA---------AAAAAAGTAGC----------AGTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779246 129 -   2996164 CTAAGTGTGCTAAGTTTCAAGAA-AATACAATCT-----ACAAAAGCCAAGC--TATAC-----------ACACT----GAAGAT----AAATTAGAAATGAT-------------AGTTT---ACACA-GCAAGGAAATTTGGC-GTATTC--CCTT-AA---------AAAAAAGTAGC----------AGTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     533570 125 +    766320 CTAAGTGTGCTAAGTTTCAAGAA-AATACAGTCT-----ACAAAAGCCAAGC--TATAC-----------ACACT----GAAGAT----AAATTAGAAATGAT-------------AGTTT---ACACA-GCAAGGAAATTTGGC-GTATTC--CCTT-AA---------AAAG----AGC----------AGTGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28989721 129 -  71996105 CTAAGTGTGCTAAGTTTCAAGAA-AATACAATCT-----ACAAAAGCCAAGC--TATAC-----------ACACT----GAAGAT----AAATTAGAAATGAT-------------AGTTT---ACACA-GCAAGGAAATTTGGC-GTATTC--CCTT-AA---------AAAAAAGCAGC----------AGTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     165967 129 +    290775 CTAAGTGTGCTAAGTTTCAAGAA-AATACAGTCT-----ACAAAAGCCAAGC--TATAC-----------ACACT----GAAGAT----AAATTAGAAATGAT-------------AGTTT---ACACA-GCAAGGAAATTTGGC-GTATTC--CCTT-AA---------AAAAAAGTAGC----------AGTTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624322 131 -   3067355 CTATGTGTGCTAAGTTTCAAGAA-AATACAATCT-----ACAAAAGCCAAGCTATATAC-----------ACACT----GAAGAT----AAATTAGAAATGAT-------------AGTTT---ACACA-TCAAGGAAATTTGGC-GGATTC--CCTT-AA---------AAAAAGGTAGC----------AGTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30064664 129 + 171630274 ATAAGTGTGCTAAGTTACAAGAA-AATACAATAT-----ACAAAAGCCACGC--TATAC-----------ACACT----GAAGAT----AAATTAGAAATGAT-------------AGTTT---ATATA-GCAAGGAAACTTGAT-GGATTC--CCTT-TA---------AAAAAAATAGT----------AGTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           211627 129 -    242197 ATAAGTGTGCTAAGCTGCAAGAA-AATACAATCT-----ACAAAAGCCAAGT--TATAC-----------ACACT----GAAGAT----AGATTAGAAATGAT-------------AGTTT---ATATA-GCAAGGAAACTTGAT-GGATTC--CCTT-AA---------AAAAAAATAGC----------AATTC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205047 130 -   1771730 ATAAGTGTGCTAAGTTACAAGAA-AATACAATCT-----ACAAAAGCCAAGT--TATAC-----------ACACC----GAAGAT----AAATTAGAAATGAT-------------AGTTT---ATATA-GCAAGGAAACTTGAT-GGATTC--CCTTAAA---------AAAAAAAAAGC----------AATTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279371 127 -    457564 ATAAGTGTGCTAAGTTACAAGAA-AATACAATCT-----ACAAAAGCCAAGT--TATAC-----------ACACT----GAAGAT----AAATTAGAAATGAT-------------AGTTT---ATATA-GCAAGGAAACTTGAT-GGATTC--CCTT------------AAAAAAATAGC----------GATTC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550            99740 188 +  18854210 CTAAGTGTACAAAATTATAAAAAGAATACAATCTAAACCACAAATGGTAggc--tacacctataatcccagcactctgggaggcc----aaagtagaaagactgtttgaggccaggagtttaagaccaa-tctgggcaacatagcaagattctatctt-aacaaaaagttaaaaaaatagctgggtgtggtagtgc
i otoGar3.GL873550         C 0 I 4
s mm10.chr17               57923428 107 -  94987271 CT--CAGAACTAAGTTACAGGG--AACGCTATCT-----AGAAAGGCCAGTA------------------GGACT----GGAAT-------------GCTGTT---------------CTC---ACATA-GCAAGG-AACTGAGT-GAATTC--CTTT-TA---------AAAGAAGC--C----------AGCTT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26220231 126 +  26524999 TGAAGTGTGCTGAAGTGTAAGAC-CATGCAGTCT-----AGAAAAGCCAAAC--T---------------GCCCC----TAAGATGCAAAAATCAGGAATGCT-------------TGTTT---ACACA-ACAAGAAAATTCAAT-AAGTTT--CTTC-TA---------TAAATAGC--C----------GGTT-
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            27936  66 +    102524 ----------------------------------------------------------------------GCAAA----GGTGCT-----------AACTTTT-------------AATTT---AGAGACATGAGGAA---TGTC-GGTCTC--CCTT-AG---------AAAA---TAGC----------AGGTT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                93279 549 + 123392446 I
e proCoq1.NW_012152574v1     587885 467 +    730504 I

a score=196940.000000
s hg38.chr6_GL000254v2_alt   877263 18 +   4827813 T-CCTAGATTCAGCTTTCT
s panTro5.chr6             29839925 18 + 175400573 T-CCTAGATTCAGCTTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30074754 18 + 173848474 T-CCTAGATTCAGCTTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881035 18 +   6154872 T-CCTAGATTCAGCTTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74589868 18 + 122973662 T-CCTAGATTCAGCTTTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071122 18 + 172585720 T-CCTAGATTCAGCTTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29733961 18 - 170955103 T-CCTAGATTCAGCTTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779375 18 -   2996164 T-CCTAGATTCAGCTTTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     533695 16 +    766320 T-CCTAA--TCAGCTTTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28989850 19 -  71996105 TCCCTAGATTCAGCTTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166096 18 +    290775 T-CCTAGATTCAGCTTTCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624453 18 -   3067355 T-CCTAGATTCAGCTTTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30064793 18 + 171630274 T-CCTGGAGTCAGCTTTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           211756 18 -    242197 T-CCTGGATTCAGCTTTCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205177 18 -   1771730 T-CCTGGATTCAGCTTTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279498 18 -    457564 T-CCTGGATTCAGCTTTCT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     588352 18 +    730504 T-CCTAGATACAGCTTTCC
i proCoq1.NW_012152574v1   I 467 I 1
s otoGar3.GL873550            99932 18 +  18854210 c-tgtagtcccagctactt
i otoGar3.GL873550         I 4 I 1
s mm10.chr17               57923535 13 -  94987271 T-CCTTGAT----CTTTT-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26220357 18 +  26524999 -AGCTAGATCCGGCTGCCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            28002 17 +    102524 -GCCTAGATTCACCTCCT-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                93279 549 + 123392446 I

a score=130533.000000
s hg38.chr6_GL000254v2_alt   877281 11 +   4827813 T--GAGTCTAACT
s panTro5.chr6             29839943 11 + 175400573 T--GAGTCTAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30074772 11 + 173848474 T--GAGTCTAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881053 11 +   6154872 T--AAGTCTAACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74589886 11 + 122973662 T--GAGTCTAACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071140 11 + 172585720 T--GAGTCTAACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29733979 11 - 170955103 T--GAGTCTAACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779393 11 -   2996164 T--GAGTCTAACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     533711 12 +    766320 TGAGAGTCTAAC-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28989869 11 -  71996105 T--GAGTCTAACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166114 11 +    290775 T--GAGTCTAACT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624471 11 -   3067355 T--GAGTCTAACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30064811 11 + 171630274 T--GAGTCTAACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           211774 11 -    242197 T--GAGTTTAACT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205195  7 -   1771730 T--GACT----CT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279516 11 -    457564 T--GAGTCTAACT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                93828 11 + 123392446 T--GAGTCTAACT
i micMur3.chr6             I 549 C 0
s proCoq1.NW_012152574v1     588371 11 +    730504 T--GAGTCTAACT
i proCoq1.NW_012152574v1   I 1 C 0
s otoGar3.GL873550            99951 10 +  18854210 g--gagtctaac-
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57923548 11 -  94987271 T--GGACACACTT
i mm10.chr17               C 0 I 4
s canFam3.chr35            26220375 11 +  26524999 T--AAGTCCAAGT
i canFam3.chr35            C 0 I 76
s dasNov3.JH582591            28019 11 +    102524 C--GAGTCCATGC
i dasNov3.JH582591         C 0 C 0

a score=457079.000000
s hg38.chr6_GL000254v2_alt   877292 37 +   4827813 GACAGGTCATCAACCTCTCAACCCAAGCCACTCAAGG
s panTro5.chr6             29839954 37 + 175400573 GACAGGTCATCAACCTCTCAACCCAAGCCACTCAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30074783 37 + 173848474 GACAGGTCATCAACCTCTCAACCCAAGCCACTCAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881064 37 +   6154872 GACAGGTCATCAACCTCTCAACCCAAGCCACTCAAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74589897 37 + 122973662 GACAGGTCATCAACCTCTCAACCCAAGCCACTCAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071151 37 + 172585720 GACAAGTCATCAACCTCTCAACCCAAGCCACTCAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29733990 37 - 170955103 GACAAGTCATCAACCTCTCAACCCAAGCCACTCAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779404 37 -   2996164 GACAAGTCATCAACCTCTCAACCCAAGCCACTCAAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     533723 35 +    766320 GACAGGTCATCAACTCCTCAATCCAG--CACTCAACG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28989880 37 -  71996105 GAGAGGTCATCAACCTCTCAACCCAAGCCACTCAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166125 37 +    290775 GACAGGTCATCAACCTCTCAACCCAAGCCACTCAAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624482 37 -   3067355 GACAGGTCATCAACCTCTCAACCCAAGCCACTCAAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30064822 37 + 171630274 GACAGGTAATCAACCTCTCAACCCAAGCCACACCAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           211785 37 -    242197 GACAGGTAATCAACCTCTCAACCCAAGCCACACCAGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205202 37 -   1771730 GACAGGTAGTCAACCTCTCAACCCAAGGCACACCAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279527 37 -    457564 GACAGGTAATCAACCTCTCAACCCAAGCCACACCAGG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                93839 36 + 123392446 GACAGTTCATCAACCCCTCAACCCAAGCCACCAAAG-
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     588382 36 +    730504 GACAGGTCATCGACCCCTCAACCCAGGCCACCAAAG-
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550            99961 33 +  18854210 -gcagg--aggatcacttgagcccaagaattcaagg-
i otoGar3.GL873550         C 0 I 474
s mm10.chr17               57923563 32 -  94987271 GACAGCTCTTCA-CCTTTCAACCCAG----CCTCAGG
i mm10.chr17               I 4 I 2
s dasNov3.JH582591            28030 36 +    102524 -GTAAGTCATTAGCCTCTTGACCCAAGCCGACCAAAT
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26220386 76 +  26524999 I

a score=655158.000000
s hg38.chr6_GL000254v2_alt   877329 51 +   4827813 GGAAATTCCTGAAATT--AATGGAAGCCACTGGGAA-AGAGAGTAGCTGTTTTT
s panTro5.chr6             29839991 51 + 175400573 GGAAATTCCTGAAATT--AATGGAAGCCACTGGGAA-AGAGAGTAGCTGTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30074820 51 + 173848474 GGAAATTCCTGAAATT--AATGGAAGCCACTGGGAA-AGAGAGTAGCTGTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881101 51 +   6154872 GGAAATTCCTGAAATT--AATGGAAGCCACTGGGAA-AGAGAGTAGCTGTTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74589934 51 + 122973662 GGAAATTCCTGAAATT--AATGGAAGCCACTGGGAA-AGCGAGTAACTGTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071188 51 + 172585720 GGAAATTTGTGAAATG--AATGGAAGCCACTGGGAA-AGAGAGTAGCTGTTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29734027 51 - 170955103 GGAAATTTGTGAAATG--AATGGAAGCCACTGGGAA-AGAGAGTAGCTGTTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779441 51 -   2996164 GGAAATTTGTGAAATG--AATGGAAGCCACTGGGAA-AGAGAGTAGCTGTTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     533758 51 +    766320 GGGAAATTGTGAAATG--AATGGAAAGCCCTGGGAA-AGAGAGTAGCTGTTTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28989917 51 -  71996105 GAAAATTTGTGAAATG--AATGGAAGCCACTGGGAA-AGAGAGTAGCTGTTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166162 51 +    290775 GGAAATTTGTGAAATG--AATGGAAGCCACTGGGAA-AGAGAGTAGCTGTTTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624519 51 -   3067355 GGAAATTTGTGAAATT--AATGGAAGCCACTGGGAA-AGAGAGTAGCTGTTTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30064859 53 + 171630274 GAAAATTCCTGAAATTAAAATGAAAGCCATTGTGTG-AGAGAGTAGCTGTTTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           211822 53 -    242197 GGAAATTCCTGAAATTAAAATGAAAGCCACTGCGAG-AGAGAATAGCTGTTTTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205239 53 -   1771730 GGAAATTCCTGAAATTAAAATGAAAGCCACTGCGAG-ACAGAATAGCTGTTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279564 52 -    457564 G-AAATTCCTGAAATTAAAATGAAAGCCACTGCCAG-AGAGAGTAGCTGTTTTT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                93875 53 + 123392446 GGAAATTTCCGAAATTGAAATAGAAGCCACTGGGAA-AGGGGGTGGCTGTTTTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     588418 53 +    730504 GGAAATTTCTGAAATTGAAATAGAAGCCACTGGGAA-AGAGAGTGGCTGTTTTT
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57923597 54 -  94987271 GGCAACTTCTGGGACTAAAACTAAAGCCACTGGGAAGAAAGAACAGCTGCTTTT
i mm10.chr17               I 2 C 0
s dasNov3.JH582591            28066 54 +    102524 AGAAAGTTCTGGAATTAAAATGGAAGCCATCGGGAAAAGAGAGTAGCCATTTTC
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26220386 76 +  26524999 I
e otoGar3.GL873550            99994 474 +  18854210 I

a score=74890.000000
s hg38.chr6_GL000254v2_alt   877380 10 +   4827813 AA-------TTTGCATG
s panTro5.chr6             29840042 10 + 175400573 AA-------TTTGCATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30074871 10 + 173848474 AA-------TTTGCATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881152 10 +   6154872 AA-------TTTGCATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74589985 10 + 122973662 AA-------TTTGCATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071239 10 + 172585720 AA-------TTTACATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29734078 10 - 170955103 AA-------TTTACATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779492 10 -   2996164 AA-------TTTACATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     533809  8 +    766320 AA-------TTACC--G
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28989968 10 -  71996105 AA-------TTTACACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166213 10 +    290775 AA-------TTTACACG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624570 10 -   3067355 AA-------TTTACACG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30064912 10 + 171630274 AA-------TTTGCATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           211875 17 -    242197 AATCTGCATTTTGCATG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205292 17 -   1771730 AATTTGCATTTTGCATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279616  3 -    457564 AA--------------G
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                93928 10 + 123392446 AA-------TCTGCATG
i micMur3.chr6             C 0 I 176
s proCoq1.NW_012152574v1     588471 10 +    730504 AA-------TCTGCATG
i proCoq1.NW_012152574v1   C 0 I 169
s dasNov3.JH582591            28120 10 +    102524 AA-------TCAGCATG
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57923651  0 -  94987271 C
e canFam3.chr35            26220386 76 +  26524999 I
e otoGar3.GL873550            99994 474 +  18854210 I

a score=97950.000000
s hg38.chr6_GL000254v2_alt   877390 10 +   4827813 TCTCttttct
s panTro5.chr6             29840052 10 + 175400573 TCTCttttct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30074881 10 + 173848474 TCTCttttct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881162 10 +   6154872 CCTCttttct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74589995  5 + 122973662 CC-----TCt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071249 10 + 172585720 CCTCttttct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29734088 10 - 170955103 CCTCttttct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779502 10 -   2996164 CCTCttttct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     533817 10 +    766320 CCTCtttttc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28989978 10 -  71996105 CCTCttttct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166223 10 +    290775 CCTCttttct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624580 10 -   3067355 CCTCttttct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30064922 10 + 171630274 CCTCttttct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           211892 10 -    242197 CCTCTTTTCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205309 10 -   1771730 CCTCttttct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279619 10 -    457564 CCTCttttct
i aotNan1.NW_018509740v1   C 0 C 0
s dasNov3.JH582591            28130 10 +    102524 CCCCGTTTCT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                93938 176 + 123392446 I
e mm10.chr17               57923651  0 -  94987271 C
e proCoq1.NW_012152574v1     588481 169 +    730504 I
e canFam3.chr35            26220386 76 +  26524999 I
e otoGar3.GL873550            99994 474 +  18854210 I

a score=255751.000000
s hg38.chr6_GL000254v2_alt   877400 32 +   4827813 t--------ttcttttttctttg--------agaca--g-agtctt---actct
s panTro5.chr6             29840062 32 + 175400573 t--------ttcttttttctttg--------agaca--g-aatctt---actct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30074891 32 + 173848474 t--------ttcttttttctttg--------agaca--g-aatctt---actct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881172 32 +   6154872 t--------ttcttttttctttg--------agaca--g-agtctc---actct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74590000 32 + 122973662 t--------ttcttttttctttg--------agaca--g-agtctc---actct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071259 32 + 172585720 t--------ttcttttttctttg--------agaca--g-agtctc---actct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29734098 32 - 170955103 t--------ttcttttttctttg--------agaca--g-agtctc---actct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779512 32 -   2996164 t--------ttcttttttctttg--------agaca--g-agtctc---actct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     533827 37 +    766320 t--------tttctttttccttg--------agacacgg-agtcttccaactct
i cerAty1.NW_012002711v1   C 0 I 23
s chlSab2.chr17            28989988 33 -  71996105 t--------ttcttttttctttg--------agaca--gaagtctc---actct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166233 32 +    290775 t--------ttcttttttctttg--------agaca--g-agtctc---actct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624590 32 -   3067355 t--------tacctttttctttg--------agaca--g-agtctc---actct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30064932 40 + 171630274 ttttcccccttttattttttttg--------agaca--g-agtctc---actct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           211902 48 -    242197 ttttccctttttttttttttttttttttttcagaca--g-agtctc---actct
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205319 40 -   1771730 ttttccttttttttttttttttg--------agaca--g-agtctc---actct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279629 39 -    457564 ttttccctttttt-ttttttttg--------agaca--g-ggtctc---actct
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6                93938 176 + 123392446 I
e mm10.chr17               57923651  0 -  94987271 C
e dasNov3.JH582591            28140  0 +    102524 C
e proCoq1.NW_012152574v1     588481 169 +    730504 I
e canFam3.chr35            26220386 76 +  26524999 I
e otoGar3.GL873550            99994 474 +  18854210 I

a score=149670.000000
s hg38.chr6_GL000254v2_alt   877432 20 +   4827813 atcacccaggctggagtgca
s panTro5.chr6             29840094 20 + 175400573 atcacccaggctggagtgca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30074923 20 + 173848474 atcacccaggctggagtgca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881204 20 +   6154872 atcacccaggctggagtgca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74590032 20 + 122973662 atcacccaggctggagtcca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071291 20 + 172585720 atcacccaggccggagtgca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29734130 20 - 170955103 atcacccaggccggagtgca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779544 20 -   2996164 atcacccaggccggagtgca
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28990021 20 -  71996105 atcacccaggccggagtgca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166265 20 +    290775 atcacccaggccggagtcca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624622 20 -   3067355 gtcacccaggctggagtgca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30064972 20 + 171630274 gacacccaggctgcagtgca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           211950 20 -    242197 gacacccaggctgcagtgcg
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205359 15 -   1771730 gacacccaggctgca-----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279668 20 -    457564 gacacccaggctgcagtgca
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6                93938 176 + 123392446 I
e mm10.chr17               57923651  0 -  94987271 C
e dasNov3.JH582591            28140  0 +    102524 C
e proCoq1.NW_012152574v1     588481 169 +    730504 I
e canFam3.chr35            26220386 76 +  26524999 I
e otoGar3.GL873550            99994 474 +  18854210 I
e cerAty1.NW_012002711v1     533864 23 +    766320 I

a score=724294.000000
s hg38.chr6_GL000254v2_alt   877452 75 +   4827813 gtggcgtgatctcagctcactgc--aacctctgcctcctgggttcaagtgattctcctgcctcag-cctcccaagtag
s panTro5.chr6             29840114 75 + 175400573 gtggcgtgatctcagctcactgc--aacctctgcctcctgggttcaagtgattctcctgcctcag-cctcccaagtag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30074943 75 + 173848474 gtggcgtgatctcagctcactgc--aacctctgcctcctgggttcaagtgattctcctgcctcag-cctcccaagtag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881224 75 +   6154872 gtggtgtgatctcagctcactgc--aacctctgcctcctgggttcaagttattctcctgcctcag-cctcccaagtag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74590052 75 + 122973662 gtggcgtgatctcggctcactgc--gacctctgcctcctgggttcaagtgattctcctgcctcag-cctcccaagtag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071311 75 + 172585720 gtgacatgatctcggctcactac--aacctctgcctcctgggttcaaatgattctcctgcctcag-tcttccaagtag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29734150 75 - 170955103 gtgacatgatctcggctcactac--aacctctgcctcctgggttcaaatgattctcctgcctcag-tcttccaagtag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779564 75 -   2996164 gtgacatgatctcggctcactac--aacctctgcctcctgggttcaaatgattctcctgcctcag-tcttccaagtag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     533887 78 +    766320 gtggcatgatctcggctcactgcaaaacctctgcctcctgggttcaagtgattctccggcctcagctctcccatgtag
i cerAty1.NW_012002711v1   I 23 I 31
s chlSab2.chr17            28990041 75 -  71996105 gtggcatgatctcggctcactgc--aacctctgcctcctgggttcaaatgattctcctgcctcag-tctcccatgtag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166285 75 +    290775 gtggcatgatctcggctcactgc--aacctctgcctcctgggttcaagtgattctcctgcctcag-tctcccatgtag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624642 75 -   3067355 gtggcatgatctcagctcactgc--aacctctgcctcctgggatcaagtgattctcctgcctcag-tctcccaagtag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30064992 75 + 171630274 gtggcatgatcttggctcactgc--aacctccacctcccagattcaagcgattcttctgccccat-cctcccaagtag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           211970 75 -    242197 gtggcatgatcttggctcactgc--aacctccgcctcccaggttcaagcgattcgtctgccccat-cctcccaagtag
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205374 75 -   1771730 gtggcatgatcttggctcactgc--aacctcctcctcccaggttcaagcgattctcctgccccat-cctcccaggtag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279688 75 -    457564 gtggcatgatcttggctcactgc--aacctctgcctcccaggctcaagcgattctcctgccccat-cctcccaagtag
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6                93938 176 + 123392446 I
e mm10.chr17               57923651  0 -  94987271 C
e dasNov3.JH582591            28140  0 +    102524 C
e proCoq1.NW_012152574v1     588481 169 +    730504 I
e canFam3.chr35            26220386 76 +  26524999 I
e otoGar3.GL873550            99994 474 +  18854210 I

a score=215738.000000
s hg38.chr6_GL000254v2_alt   877527 24 +   4827813 ctgggactacaggcacctgccacc
s panTro5.chr6             29840189 24 + 175400573 ctgggactacaggcgcctgccacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30075018 24 + 173848474 ctgggactacaggcgcctgccacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881299 24 +   6154872 ctgggactacaggcgcctgccacc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74590127 24 + 122973662 ctgggactacaggcgcctgccacc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071386 24 + 172585720 ctgggactacaggcgcctgccacc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29734225 24 - 170955103 ctgggactacaggcgcctgccacc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779639 24 -   2996164 ctgggactacaggcgcctgccacc
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28990116 24 -  71996105 ctgggactacaggcgcctgccacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166360 24 +    290775 ctgggactacaggcgcctggcacc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624717 24 -   3067355 ctgggactacaagtgcctaccacc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30065067 24 + 171630274 gtgggactacatgcacctgccacc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           212045 24 -    242197 gtgggactacaggcacctgccacc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205449 24 -   1771730 gtgggactacaggtacctgccacc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279763 24 -    457564 gtgggactacaggcacctgccacc
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6                93938 176 + 123392446 I
e mm10.chr17               57923651  0 -  94987271 C
e dasNov3.JH582591            28140  0 +    102524 C
e proCoq1.NW_012152574v1     588481 169 +    730504 I
e canFam3.chr35            26220386 76 +  26524999 I
e otoGar3.GL873550            99994 474 +  18854210 I
e cerAty1.NW_012002711v1     533965 31 +    766320 I

a score=127738.000000
s hg38.chr6_GL000254v2_alt   877551 18 +   4827813 acacccag----ctaa--------------tttttt
s panTro5.chr6             29840213 21 + 175400573 acacccag----ctaa-----------ttttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30075042 22 + 173848474 acacccagtcttttaa--------------tttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881323 21 +   6154872 acacccag----ctaa-----------ttttttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74590151 17 + 122973662 acacccag----ctaa---------------ttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071410 16 + 172585720 acacccag----ctaa----------------tttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29734249 18 - 170955103 acacccag----ctaa--------------tttttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779663 18 -   2996164 acacccag----ctaa--------------tttttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     533996 18 +    766320 acacccag----ctaa--------------tttttt
i cerAty1.NW_012002711v1   I 31 C 0
s chlSab2.chr17            28990140 32 -  71996105 acacccag----ctaatttttttttttttttttttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166384 18 +    290775 acacccag----ctaa--------------tttttt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624741 18 -   3067355 acacacag----ataa--------------tttttt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30065091 18 + 171630274 atgcccag----ctaa--------------attttt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           212069 18 -    242197 atgcccag----ctaa--------------attttt
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205473 18 -   1771730 atgcccag----ctaa--------------attttt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279787 18 -    457564 atgcccag----ctaa--------------attttt
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6                93938 176 + 123392446 I
e mm10.chr17               57923651  0 -  94987271 C
e dasNov3.JH582591            28140  0 +    102524 C
e proCoq1.NW_012152574v1     588481 169 +    730504 I
e canFam3.chr35            26220386 76 +  26524999 I
e otoGar3.GL873550            99994 474 +  18854210 I

a score=10008.000000
s hg38.chr6_GL000254v2_alt   877569 7 +   4827813 ttttttt
s panTro5.chr6             29840234 7 + 175400573 ttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30075064 7 + 173848474 ttttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881344 7 +   6154872 ttttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74590168 7 + 122973662 ttttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071426 7 + 172585720 ttttttt
i rheMac8.chr4             C 0 I 3
s macFas5.chr4             29734267 7 - 170955103 ttttttt
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1    2779681 7 -   2996164 ttttttt
i macNem1.NW_012011356v1   C 0 I 3
s cerAty1.NW_012002711v1     534014 7 +    766320 ttttttt
i cerAty1.NW_012002711v1   C 0 I 7
s chlSab2.chr17            28990172 7 -  71996105 ttttttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166402 7 +    290775 ttttttt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624759 2 -   3067355 tt-----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30065109 3 + 171630274 tgc----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           212087 3 -    242197 tgc----
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205491 3 -   1771730 tgc----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279805 3 -    457564 tgc----
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57923651 7 -  94987271 TTTTTTT
i mm10.chr17               C 0 C 0
e micMur3.chr6                93938 176 + 123392446 I
e dasNov3.JH582591            28140 0 +    102524 C
e proCoq1.NW_012152574v1     588481 169 +    730504 I
e canFam3.chr35            26220386 76 +  26524999 I
e otoGar3.GL873550            99994 474 +  18854210 I

a score=6006.000000
s hg38.chr6_GL000254v2_alt   877576 1 +   4827813 t
s panTro5.chr6             29840241 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30075071 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881351 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74590175 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071436 1 + 172585720 t
i rheMac8.chr4             I 3 C 0
s macFas5.chr4             29734277 1 - 170955103 t
i macFas5.chr4             I 3 C 0
s macNem1.NW_012011356v1    2779691 1 -   2996164 t
i macNem1.NW_012011356v1   I 3 C 0
s chlSab2.chr17            28990179 1 -  71996105 t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166409 1 +    290775 t
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624761 1 -   3067355 t
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57923658 1 -  94987271 T
i mm10.chr17               C 0 C 0
e micMur3.chr6                93938 176 + 123392446 I
e dasNov3.JH582591            28140 0 +    102524 C
e proCoq1.NW_012152574v1     588481 169 +    730504 I
e canFam3.chr35            26220386 76 +  26524999 I
e saiBol1.JH378357           212090 0 -    242197 C
e otoGar3.GL873550            99994 474 +  18854210 I
e aotNan1.NW_018509740v1     279808 0 -    457564 C
e cebCap1.NW_016107755v1     205494 0 -   1771730 C
e calJac3.chr4             30065112 0 + 171630274 C
e cerAty1.NW_012002711v1     534021 7 +    766320 I

a score=21294.000000
s hg38.chr6_GL000254v2_alt   877577 3 +   4827813 ttt
s panTro5.chr6             29840242 3 + 175400573 ttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30075072 3 + 173848474 ttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881352 3 +   6154872 ttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74590176 3 + 122973662 ttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071437 3 + 172585720 ttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29734278 3 - 170955103 ttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779692 3 -   2996164 ttt
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28990180 3 -  71996105 ttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166410 3 +    290775 ttt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624762 3 -   3067355 ttt
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           100468 3 +  18854210 TTT
i otoGar3.GL873550         I 474 C 0
s mm10.chr17               57923659 3 -  94987271 TTT
i mm10.chr17               C 0 C 0
e micMur3.chr6                93938 176 + 123392446 I
e dasNov3.JH582591            28140 0 +    102524 C
e proCoq1.NW_012152574v1     588481 169 +    730504 I
e canFam3.chr35            26220386 76 +  26524999 I
e saiBol1.JH378357           212090 0 -    242197 C
e aotNan1.NW_018509740v1     279808 0 -    457564 C
e cebCap1.NW_016107755v1     205494 0 -   1771730 C
e calJac3.chr4             30065112 0 + 171630274 C
e cerAty1.NW_012002711v1     534021 7 +    766320 I

a score=92331.000000
s hg38.chr6_GL000254v2_alt   877580 11 +   4827813 g-tatttttggt
s panTro5.chr6             29840245 11 + 175400573 g-tatttttggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30075075 12 + 173848474 gttatttttggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881355 11 +   6154872 g-tatttttggt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74590179 11 + 122973662 g-tatttttggt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071440 11 + 172585720 g-tatttttggt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29734281 11 - 170955103 g-tatttttggt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779695 11 -   2996164 g-tatttttggt
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28990183 11 -  71996105 g-tatttttggt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166413 11 +    290775 g-tatttttggt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624765 11 -   3067355 g-tatttttggt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30065112 10 + 171630274 --tacttttagt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           212090 10 -    242197 --tatttttggt
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205494 10 -   1771730 --tatttttagt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279808 10 -    457564 --tatttttagt
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           100471 11 +  18854210 G-TAAGTTTTCT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                93938 176 + 123392446 I
e mm10.chr17               57923662  0 -  94987271 C
e dasNov3.JH582591            28140  0 +    102524 C
e proCoq1.NW_012152574v1     588481 169 +    730504 I
e canFam3.chr35            26220386 76 +  26524999 I
e cerAty1.NW_012002711v1     534021  7 +    766320 I

a score=39105.000000
s hg38.chr6_GL000254v2_alt   877591 4 +   4827813 agag
s panTro5.chr6             29840256 4 + 175400573 agag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30075087 4 + 173848474 agag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881366 4 +   6154872 agag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74590190 4 + 122973662 agag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071451 4 + 172585720 agag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29734292 4 - 170955103 agag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779706 4 -   2996164 agag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     534028 4 +    766320 agag
i cerAty1.NW_012002711v1   I 7 C 0
s chlSab2.chr17            28990194 4 -  71996105 agag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166424 4 +    290775 agag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624776 4 -   3067355 aaag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30065122 4 + 171630274 agaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           212100 4 -    242197 agaa
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205504 4 -   1771730 agaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279818 4 -    457564 agaa
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           100482 2 +  18854210 --AG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                93938 176 + 123392446 I
e mm10.chr17               57923662 0 -  94987271 C
e dasNov3.JH582591            28140 0 +    102524 C
e proCoq1.NW_012152574v1     588481 169 +    730504 I
e canFam3.chr35            26220386 76 +  26524999 I

a score=353015.000000
s hg38.chr6_GL000254v2_alt   877595 37 +   4827813 aca-ggtttcaccatgttggtctggctggtctcaaact
s panTro5.chr6             29840260 37 + 175400573 aca-ggtttcaccatgttggtcaggctggtctcaaact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30075091 37 + 173848474 aca-ggtttcaccatgttggtcaggctggtctcaaact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881370 37 +   6154872 aca-ggtttcaccatgttggtcaggctggtctcaaact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74590194 38 + 122973662 tcagggtttcaccatgttggtcaggctggtctcaaact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071455 38 + 172585720 acagggtttcaccatgctggtcaggttggtctcaaact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29734296 38 - 170955103 acagggtttcaccatgctggtcaggttggtctcaaact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779710 38 -   2996164 acagggtttcaccatgctggtcaggttggtctcaaact
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     534032 38 +    766320 acaggggttcaccaggctggtcaggttggtctcaaact
i cerAty1.NW_012002711v1   C 0 I 10
s chlSab2.chr17            28990198 38 -  71996105 acagggtttcaccatgctggtcaggttggtctcaaact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166428 38 +    290775 acagggtttcaccatgctggtcaggttggtctcaaact
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624780 38 -   3067355 acagggtttcaccatgttggtcaggttggtctcaaact
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30065126 38 + 171630274 acagggtttcactatgttggccaggttggtctcaaact
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           212104 38 -    242197 acagggtttcactatgttggccaggttggtctcaaact
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205508 38 -   1771730 acagggtttcactatgttggccaggttggtttcaaact
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279822 38 -    457564 acaaggtttcactatgttagccaggttggtcttaaact
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           100484 35 +  18854210 ATATAGCTTTCCT---TGAGTCTGACAGGTCATCAACT
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26220462 16 +  26524999 GCA-GCTTTCACGGTGT---------------------
i canFam3.chr35            I 76 C 0
e micMur3.chr6                93938 176 + 123392446 I
e mm10.chr17               57923662  0 -  94987271 C
e dasNov3.JH582591            28140  0 +    102524 C
e proCoq1.NW_012152574v1     588481 169 +    730504 I

a score=39480.000000
s hg38.chr6_GL000254v2_alt   877632 11 +   4827813 cctgaccatga
s panTro5.chr6             29840297 11 + 175400573 cctgaccatga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30075128 11 + 173848474 cctgaccatga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881407 11 +   6154872 cctgaccgtga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74590232 11 + 122973662 cctgaccatga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071493  7 + 172585720 cctgacc----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29734334  7 - 170955103 cctgacc----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779748  7 -   2996164 cctgacc----
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28990236  7 -  71996105 cctgacc----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166466  7 +    290775 cctgacc----
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624818  7 -   3067355 cctgacc----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30065164 10 + 171630274 cctgaccgtg-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           212142 10 -    242197 cctgaccttg-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205546 10 -   1771730 cctgaccttg-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279860 10 -    457564 cctgaccttg-
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           100520  8 +  18854210 CTCAACCA---
i otoGar3.GL873550         I 1 C 0
e micMur3.chr6                93938 176 + 123392446 I
e mm10.chr17               57923662  0 -  94987271 C
e dasNov3.JH582591            28140  0 +    102524 C
e proCoq1.NW_012152574v1     588481 169 +    730504 I
e canFam3.chr35            26220478  0 +  26524999 C
e cerAty1.NW_012002711v1     534070 10 +    766320 I

a score=517646.000000
s hg38.chr6_GL000254v2_alt   877643 63 +   4827813 tcatgatctgcctgccttggcctccca----aaagtgctgggattac--aggggtga-gccaccaca----------------ccc
s panTro5.chr6             29840308 63 + 175400573 tcatgatctgcctgccttggcctccca----aaagtgctgggattac--aggggtga-gccaccaca----------------ccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30075139 63 + 173848474 tcatgatctgcctgccttggcctccca----aaagtgctgggattac--aggggtga-gccaccaca----------------ccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881418 63 +   6154872 tcatgatctgcctgccttggcctccca----aaagtgctgggattac--aggggtga-gccaccaca----------------ccc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74590243 63 + 122973662 tcatgacctgcctgccttggcctccca----aaagtgctgggattac--aggggtga-gccaccaca----------------ccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071500 63 + 172585720 tcatgatctgcctgccttggcctccca----aaagtgctgggattac--aggggtga-gccaccaca----------------ccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29734341 63 - 170955103 tcatgatctgcccgccttggcctccca----aaagtgctgggattac--aggggtga-gccaccaca----------------ccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779755 63 -   2996164 tcatgatctgcctgccttggcctccca----aaagtgctgggattac--aggggtga-gccaccaca----------------ccc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     534080 65 +    766320 ccatgatctggccgccttggcctccca----aaag-gcctggatgaccagggggtgagggcaccaca----------------ccc
i cerAty1.NW_012002711v1   I 10 C 0
s chlSab2.chr17            28990243 63 -  71996105 tcatgatctgcccgccttggcctccca----aaagtgctgggattac--aggggtga-gccaccaca----------------ccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166473 63 +    290775 tcatgatctgcccgccttggcctccca----aaagtgctgggattac--aggggtga-gccaccaca----------------ccc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624825 63 -   3067355 tcgtgatctgcccgccttggcctccca----aaagtgctgggattat--agggatga-gccaccaca----------------ccc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30065174 59 + 171630274 ---tgatccgcctgcctcggcctccc-----aaagtgctgggattac--aggtgtga-gccactgca----------------ccc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           212152 59 -    242197 ---tgatccgcctgcctcggcttccc-----aaagtgctgggattac--aggtgtga-gccactgca----------------ccc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205556 59 -   1771730 ---tgatcagcctgaatcggcctccc-----aaagtgctgggattac--aggtgtga-gccactgca----------------ccc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279870 59 -    457564 ---tgatctgcctgcctcggcctccc-----aaagtgctgggattac--aggtgtga-gccactgca----------------cct
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           100528 64 +  18854210 ------------------AGCCACCAAGGAGAAATTTCTGAAATTGA--AATAG-AA-GCCACTGAGAAAGAAAGTGGTTGTTTCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26220478 24 +  26524999 -------CTGCCCCTTTCTACCTC-------AAGCCAC------------------------------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6                93938 176 + 123392446 I
e mm10.chr17               57923662  0 -  94987271 C
e dasNov3.JH582591            28140  0 +    102524 C
e proCoq1.NW_012152574v1     588481 169 +    730504 I

a score=157251.000000
s hg38.chr6_GL000254v2_alt   877706 20 +   4827813 agc-cTGCACA--------CCT-CTTTTCA
s panTro5.chr6             29840371 20 + 175400573 agc-cTGCACA--------CCT-CTTTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30075202 20 + 173848474 agc-cTGCACA--------CCT-CTTTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881481 20 +   6154872 agc-cTGCACA--------CCT-CTTTTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74590306 18 + 122973662 agc-cTGCACA--------CCT-CTTT--A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071563 20 + 172585720 agc-cTACACA--------CCT-CTTTTCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29734404 20 - 170955103 agc-cTACACA--------CCT-CTTTTCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779818 20 -   2996164 agc-cTACACA--------CCT-CTTTTCG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     534145 22 +    766320 ACCTTTACACA--------CTTCCTTTTTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28990306 20 -  71996105 agc-cTACACA--------CTT-CTTTTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166536 20 +    290775 agc-cTACACA--------CTT-CTTTTTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624888 20 -   3067355 agc-cTATACA--------CCT-CTTTTCG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30065233 20 + 171630274 ggc-cTGCACA--------CCT-CTTTTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           212211 28 -    242197 ggc-cTGCACAAGGGCAAGCCT-CTTTTCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205615 20 -   1771730 ggc-cTGCACA--------CCT-CTTTTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279929 20 -    457564 ggc-cTGCACA--------TCT-CTTTTCA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           100592 19 +  18854210 AAT-CT-CATT--------CCC-CTTTTCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57923662 20 -  94987271 AAC-CTGTATG--------CCC-CTTTGAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26220502  9 +  26524999 --------ACA--------CCC-TCT----
i canFam3.chr35            C 0 C 0
e micMur3.chr6                93938 176 + 123392446 I
e dasNov3.JH582591            28140  0 +    102524 C
e proCoq1.NW_012152574v1     588481 169 +    730504 I

a score=2019572.000000
s hg38.chr6_GL000254v2_alt   877726 195 +   4827813 AGAGCAAAACCAGTGCAACTCAAAGACATCAATCTTCTTGTAGTTAAGCttat---t---attattattattTACAAGCTTGATGAACAGAGTTAAAAGAGAAGGGCAGAAGTTGGG-AGGTGCCAGGGCAATCTTGTGATGTCT-CTGGCATTCTTCCCCAGGGGGcatcccagc---ccagccccagccta---gcccC-CATGTCCG
s panTro5.chr6             29840391 195 + 175400573 AGAGCAAAACCAGTGCAACTCAAAGACATCAATCTTCTTGTAGTTAAGCttat---t---attattattattTACAAGCTTGATGAACAGAGTTAAAAGAAAAGGGCAGAAGTTGGG-AGGTGCCAGGGCAATCTTGTGATGTCT-CTGGCATTCTTCCCCAGGTGGcatcccagc---ccagccccagccta---gcccC-CATGTCCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30075222 195 + 173848474 AGAGCAAAACCAGTGCAACTCAAAGACATCAATCTTCTTGTAGTTAAGCttat---t---attattattattTACAAGCTTGATGAACAGAGTTAAAAGAAAAGGGCAGAAGTTGGG-AGGTGCCAGGGCAATCTTGTGATGTCT-CTGGCATTCTTCCCCAGGTGGCATCCCAGC---CGAGCCCCAGCCTA---GCCCC-CATGTCCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881501 198 +   6154872 AGAGCAAAACCAGTGCAACTCAAAGACATCAATCTTCTTGTAGTTAAGCttattagt---attattattattTACAAGCTTGATGAACAGAGTTAAAAGAGAAGGGCAGAAGTTGGG-AGGTGCCAGGGCAATCTTGTGATGTCT-CTGGCATTCTTCCCCAGGTGGcatcccagc---ccagccccagccta---gcccC-CATGTCCG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74590324 195 + 122973662 AGAGCAAAACCAGTGCAACTCAAAGACATCAATCTTCTTGTAGCTAAGCTTCT---T---ATTATTATTATTTACAAGCTTGATGAACAGAGCTAAAAGAGAAGGGCAGAAGTGGGG-AGGTGCCAGGGCAATCTTGTGATGTCT-CTGACATTCTTCCCCAGGTGGcatcccagc---ccagccccagccta---gcccC-CATGTCCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071583 195 + 172585720 AGAGCAAAACCAGTGCAATTCAAAGACATCAATCTACTTGTAGCTAAGCTTTT---T---ATTATTATTATTTACAAGCTTGATGAACAGGGTTAAAAGAGAAGGGCAGAAGTGGGG-AGGTGCCAGGGCAATCTTGTGATGTCT-GTGATATTCTTCCCCAGGTGGCATCCCAGC---CCAGCCCCAGCTGG---GCCCC-CATGTCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29734424 195 - 170955103 AGAGCAAAACCAGTGCAATTCAAAGACATCAATCTACTTGTAGCTAAGCTTTT---T---ATTATTATTATTTACAAGCTTGATGAACAGGGTTAAAAGAGAAGGGCAGAAGTGGGG-AGGTGCCAGGGCAATCTTGTGATGTCT-GTGATATTCTTCCCCAGGTGGCATCCCAGC---CCAGCCCCAGCTGG---GCCCC-CATGTCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2779838 195 -   2996164 AGAGCAAAACCAGTGCAATTCAAAGACATCAATCTACTTGTAGCTAAGCTTTT---T---ATTATTATTATTTACAAGCTTGATGAACAGGGTTAAAAGAGAAGGGCAGAAGTGGGG-AGGTGCCAGGGCAATCTTGTGATGTCT-GTGATATTCTTCCCCAGGTGGCATCCCAGC---CCAGCCCCAGCTGG---GCCCC-CATGTCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     534167 191 +    766320 AGGGCATAAACAGTGC-ACTCAAAGACCAGCATCTTCTTGTAGGCAAGC---T---T---GTTATTATTATTTACAAGCTTGATGAACAGGGTTAAAAGAGAAGGGCAGAAGTGTGG-AGATGCCAGGGCAATCTTGTGATGTCT-GTGATATTCTTCCCCAGGTGGCATCCCAGC---CCAGCCCCAGCCGG---GCCCC-CATGTCCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28990326 195 -  71996105 AGGGCAAAACCAGTGCAACTCAAAGACATCAATCTTCTTGTAGCTAAGCTTTT---T---ATTATTATTATTTACAAGCTTGATGAACAGGGTTAAAAGAGAAGGGCAGAAGTGGGG-AGGTGCCAGGGCAATCTTGTGATGTCT-GTGATATTCTTCCCCAGGTGGCATCCCAGC---CCAGCCCCAGCCGG---GCCCC-CATGTCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166556 195 +    290775 AGGGCAAAACCAGTGCAACTCAAAGACATCAATCTTCTTGTAGCTAAGCTTTT---T---ATTATTATTATTTACAAGCTTGATGAACAGGGTTAAAAGAGAAGGGCAGAAGTGGGG-AGATGCCAGGGCAATCTTGTGATGTCT-GTGATATTCTTCCCCAGGTGGCATCCCAGC---CCAGCCCCAGCCGG---GCCCC-CATGTCCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2624908 195 -   3067355 AGAGCAAAACCAGTGCAACTCAAAGACATCAATCTTCTTGTAGCTAAGCTTTT---T---ATTATTATTATTTACAAGCTTGATGAACAGGGTTAAAAGAAAAGGGCAGAACTGGGG-AGGTGCCAGGGCAATCTTGTGATGTCT-GTGATATTCTTCCCCAGGTGGCATCCCAGC---CCAGCCCCAGCCGG---GACCC-CATGTCCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30065253 192 + 171630274 AGAACAAAACCAGTGCAACTCAAAGGCATCAATTTTCTTGTAGCTAAGCTTTC---T------ATGATTATTTACAAGCTTGATGAAGAGAGTTAAAAGACAAGGGCAGAAGTGGAG-AGGTGCCAGGGCAATCCTGTGATGTCT-CTGGCATTCTTCCCCAGGTGGCATTCCAGC---CCAGCCCCTGCCTG---GCCCC-CATGTCCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           212239 189 -    242197 AGAGCAAAACCAGTGCAACTCAAAGGCATCGATTTTCTTGTAGTTAAGCTTTT---T---------ATTATTTACAAGCTTGATGAGCAGAGTTAAAAGAGAAGGGCAGAAGTGGAG-AGGTGTCAGGGCAATCCTGTGATGTCT-CCGGCATTCTTCCCCAGGTGGCATCCCAGC---CCCACCCCTGCCTG---GCCCC-CATGTCCG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205635 192 -   1771730 AAAGGAAAACCAGTGCAACTCAAAGGCATCAATTTCCTTGTAGTTAAGCTTTT---T------ATTATTATTTACAAGCTTGATGAGCAGAGTTAAAAGAGAAGGGCAGAAGTGGAG-AGGTGCCAGGGCAATCCTGTGATGTCT-CTGGCACTCTTCCCCAGGTGGCATCCCAGC---CCAGCCCCTGCCTG---GCCCC-CATGTCCG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     279949 191 -    457564 AGAGCAAAACCAGTGTAACTCAAAGGCATCAATTTTCTTGTAGCTAAGCTTTT---T------ATTATTATTTACAAGCTTGATGAGCAGAGTTAAAAGAGAAGGGCAGAAGTGGAG-AGGTGCCAGGGCAATCCTGTGAAGACT-CTGGCATTCTTCCCCAGGTGGCATCCCATC---CCAGCCCCTGCCTG---G-CCC-CATGTCCC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           100611 187 +  18854210 AGAATGTAA-CAGTGTGACTCAAAGAGACCCA----CCTATATCTGAGCTTTT---T---ATTATTATTCTTTAAAAACATAATGAACACAGTTAAAAGAGAAAGGGTG----GGGG-AGGTACCAAGGCAAT-TTGTGCTATCT-TTCGTG----TCCTCAGGTGATATCCTAGCCTACTACCCCCAGCCTGCCCACCCC-CACCTCCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57923682 167 -  94987271 AGAACAGAATCACTGC-----AAAGA-----------TCCTACCCATGTTCTT---T----TTATCAGTATTTAAAAGCCTGACGAACACAATGCAATGTA---GGCAAA--------ATGTACC-TGGCAATC-TGTGGAGGCT-GATCAATGTTCTTCCAAGAGAGCCCTCAGC---CCAGTCCCTGCCCA---GCCCTGCCTGCCCC
i mm10.chr17               C 0 I 5
s canFam3.chr35            26220511 124 +  26524999 -------------------------------------------CCAAGCTTTC---TGCTGCTATTATTACATAGACGCTTGATGAA--------------------------GGGA-AGGAAGCAGGG-AGCCCCGGACTGACT-GCAGAA-GCCACCTGGGGTGGGGCCCC------CCAGCCCAGCTCGG---CCCCC-CAACTCTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            28140 168 +    102524 AGAATGCAACCGCTGCAGCTCAAGAAGGCACGCCCATACGTGGC----CTTTT---T---GGT-------------------AGGAACACAGCTGAGAGAG---GACAGAAGAGCGGCAGGTGCCGGCGCAGGTTTGCCATGTCTCCCCGGGTTCTCCTCCAGCAGG--TGCTACC---CCAGGCCCAGCCTG---CCCGC-CCCCCCC-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                93938 176 + 123392446 I
e proCoq1.NW_012152574v1     588481 169 +    730504 I

a score=18380.000000
s hg38.chr6_GL000254v2_alt   877921 1 +   4827813 G
s panTro5.chr6             29840586 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30075417 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881699 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74590519 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071778 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29734619 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2780033 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     534358 1 +    766320 G
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28990521 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166751 1 +    290775 G
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2625103 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30065445 1 + 171630274 G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           212428 1 -    242197 G
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205827 1 -   1771730 G
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     280140 1 -    457564 G
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                94114 1 + 123392446 G
i micMur3.chr6             I 176 C 0
s otoGar3.GL873550           100798 1 +  18854210 A
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57923854 1 -  94987271 G
i mm10.chr17               I 5 C 0
s canFam3.chr35            26220635 1 +  26524999 G
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            28308 1 +    102524 G
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     588481 169 +    730504 I

a score=6932027.000000
s hg38.chr6_GL000254v2_alt   877922 392 +   4827813 TCCCCTCCTGCCCCTGTACTAACCCTGAAGCTGCTCGATAAGCGTCCATGCCATCCGAGAGCCGCTGGCATCAAACACCACATGGCCCTGAGGGA-AGGAA-CATGTGGAGCAAGGCAAAGGAGACAAAAGCAAGAGTGA-AAGAGAACATCAGGGACTCTTTAAATCCTTCTGTTTTTGATGTAATTGAGCCTCTGAATGAATGCTATTTATGGCATTTGC---CTGCATATAGGACATACCCCAGATGCCCATACCCTAGATTTTAGAAACATTATTCTTTGGAGAAGGAGCTTCACTTA---TGAGA-TTTGAATGGG-AAAAAATC---------------CCCAGACAGAACACCAGCA-----GGCTT---ctggttgtgtggcctaagcaagtcagcaaa-tctctctggaaactaatct
s panTro5.chr6             29840587 392 + 175400573 TCCCCTCCTGCCCCTGTACTAACCCTGAAGCTGCTCGATAAGCGTCCATGCCATCCGAGAGCCGCTGGCATCAAACACCACATGGCCCTGAGGGA-AGGAA-CATGTGGAGCAAGGCAAAGGAGACAAAAGCAGGAGTGA-AAGAGAACATCAGGGACTCTTTAAATCCTTCTGTTTTTGATGTAATTGAGCCTCTGAATGAATGCTATTTATGGCATTTGC---CTGCATATAGGACATACCCCAGATGCCCATACCCTAGATTTTAGAAACATCATTCTTTGGAGAAGGAGCTTCACTTA---TGAGA-TTTGAATGGG-AAAAAATC---------------CCCAGACAGAACACCAGCA-----GGCTT---ctggttgtgtggcctaagcaagtcagcaaa-tctctctggaaactaatct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30075418 392 + 173848474 TCCCCTCCTGCCCCTGTACTAACCCTGAAGCTGCTCGATAAGCGTCCATGCCATCCGAGAGCCGCTGGCATCAAACACCACATGGCCCTGAGGGA-AGGAA-CATGTGGAGCAAGGCAAAGGAGACAAAAGCAGGAGTGA-AAGAGAACATCAGGGACTCTTTAAATCCTTCTGTTTTTGATGTAATTGAGCCTCTGAATGAATGCTATTTATGGCATTTGC---CTGCATATAGGACATACCCCAGATGCCCATACCCTAGATTTTAGAAACATCATTCTTTGGAGAAGGAGCTTCACTTA---TGAGA-TTTGAATGGG-AAAAAATC---------------CCCAGACAGAACACCAGCA-----GGCTT---ctggttgtgtggcctaagcaagtcagcaaa-tctctctggaaactaatct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5881700 392 +   6154872 TCCCCTCCTGCCCCTGTACTAACCCTGAAGCTGCTCGATAAGCGTCCATGCCATCCGAGAGCCGCTGGCATCAAACACCACATGGCCCTGAGGGA-AGGAA-CATGTGGAGCAAGGCAAAGGAGACAAAAGCAGGAGTGA-AAGAGAACATCAGGGACTCTTTAAATCCTTCTGTTTTTGATGTAATTGAGCCTCTGAATGAATGCTATTTATGGCATTTGC---CTGCATATAGGACATACCCCAGATGCCCATACCCTAGATTTTAGAAACATTATTCTTTGGAGAAGGAGCTTCACTTA---TGAGA-TTTGTATGGG-AAAAAATC---------------CCCAGACAGAACACCAGCA-----GGCTT---ctggttgtgtggcctaagcaagtcagcaaa-tctctctggaaactaatct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74590520 393 + 122973662 TCCCCTCCTGCCCCTGTACTCACCCTGAAGCTGCTCGATAAGCGTCCATGCCATCCGAGAGCCGCTGGCATCAAACACCACATGGCCCTGAGGGA-AGGAA-CATGTGGAGGAAGGCAAAGGAGACAAAAGCAGGAGTGA-AAGAGAACATCAGGGACTCTTTAAATCCTTCTGTTTTTGATGTAATTGAGCCTCTGAATGAATGCTATTTATGGCATTTGC---CTGCATATAGGACATACCCCAGATGCCCATACCCTAGATTTTAGAAACATTATTCTTTGGAGAAGGAGCTTCACTCA---TGAGATTTTGAATGGG-AAAAAATC---------------CCCAGACAGAACACCAGCA-----GGCTT---ctggttgtgtggcctaagcaagtcagcaaattctctctgg-aactaatct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30071779 392 + 172585720 TCCCCTCCTGCCCCAGTACTCACCCTGCAGCTGCTCGATAAGCGTCCATGCCATCCGAGAGCCACTGGCATCAAACACCACATGGCCCTGAGGGA-AGGAA-CATGTGGAGGAAGGCAAAGGGGATAAAAGCAGGAGTGA-AAGAGAACATCAGGGACTCTTTAAATCCTTCTGTTTTTGATGTAATTGAGCCTCTGAATGAATGCTATTTATGGCATTTGC---CTGCATATAGGACATACCCCAGATGCCCATACCCTAGATTTTAGAAACATTATTCTTTGGAGAAGGAGCTTCACTCA---TGAGA-TTTGAATGGG-AAAAAATC---------------CCCAGACAGAACACCAGCA-----GGttt---ctggttgtgtggcctaagcaagtcagcaaa-tctctctggaaactaatct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29734620 392 - 170955103 TCCCCTCCTGCCCCAGTACTCACCCTGCAGCTGCTCGATAAGCGTCCATGCCATCCGAGAGCCACTGGCATCAAACACCACATGGCCCTGAGGGA-AGGAA-CATGTGGAGGAAGGCAAAGGGGATAAAAGCAGGAGTGA-AAGAGAACATCAGGGACTCTTTAAATCCTTCTGTTTTTGATGTAATTGAGCCTCTGAATGAATGCTATTTATGGCATTTGC---CTGCATATAGGACATACCCCAGATGCCCATACCCTAGATTTTAGAAACATTATTCTTTGGAGAAGGAGCTTCACTCA---TGAGA-TTTGAATGGG-AAAAAATC---------------CCCAGACAGAACACCAGCA-----GGttt---ctggttgtgtggcctaagcaagtcagcaaa-tctctctggaaactaatct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2780034 392 -   2996164 TCCCCTCCTGCCCCAGTACTCACCCTGCAGCTGCTCGATAAGCGTCCATGCCATCCGAGAGCCACTGGCATCAAACACCACATGGCCCTGAGGGA-AGGAA-CATGTGGAGGAAGGCAAAGGGGATAAAAGCAGGAGTGA-AAGAGAACATCAGGGACTCTTTAAATCCTTCTGTTTTTGATGTAATTGAGCCTCTGAATGAATGCTATTTATGGCATTTGC---CTGCATATAGGACATACCCCAGATGCCCATACCCTAGATTTTAGAAACATTATTCTTTGGAGAAGGAGCTTCACTCA---TGAGA-TTTGAATGGG-AAAAAATC---------------CCCAGACAGAACACCAGCA-----GGttt---ctggttgtgtggcctaagcaagtcagcaaa-tctctctggaaactaatct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     534359 393 +    766320 TCCCCTCCTGCCCCAGTACTCACCCTGCAGCTGCTCGATAAGCGTCCATGCCATCCGAGAGCCACTGGCATCAAACACCACATGGCCCTGAGGGA-AGGAA-CATGTGGAGGAAGGCAAAGGGGATAAAAGCAGGAGTGA-AAGAGAACATCAGGGACTCTTTAAATCCTTCTGTTTTTGATGTAATTGAGCCTCTGAATGAATGCTATTTATGGCATTTGC---CTGCATATAGGACATACCCCAGATGCCCATACCCTAGATTTTAGAAACATTATTCTTTGGAGAAGGAGCTTCACTCA---TGAGA-TTTGAATGGGAAAAAAATC---------------CCCAGACAGAACACCAGCA-----GGTTT---ctggttgtgtggcctaagcaagtcagcaaa-tctctctggaaactaatct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28990522 392 -  71996105 TCCCCTCCTGCCCCAGTACTCACCCTGCAGCTGCTCGATAAGCGTCCATGCCATCCGAGAGCCACTGGCATCAAACACCACATGGCCCTGAGGGA-AGGAA-CATGTGGAGGAAGGCAAAGGGGATAAAAGCAGGAATGA-AAGAGAACATCAGGGACTCTTTAAATCCTTCTGTTTTTGATGTAATTGAGCCTCTGAATGAATGCTATTTATGGCATTTGC---CTGCATATAGGACATACCCCAGATGCCCATACCCTAGATTTTAGAAACATTATTCTTTGGAGAAGGAGCTTCACTCA---TGAGA-TTTGAATGGG-AAAAAATC---------------CCCAGACAGAACACCAGCA-----GGTTT---CTGGTTGTGTGGCCTAAGCAAGTCAGCAAA-TCTCTCTGGAAACTAATCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     166752 392 +    290775 TCCCCTCCTGCCCCAGTACTCACCCTGCAGCTGCTCGATAAGCGTCCATGCCATCCGAGAGCCACTGGCATCAAACACCACATGGCCCTGAGGGA-AGGAA-CATGTGGAGGAAGGCAAAGGGGATAAAAGCAGGAGTGA-AAGAGAACATCAGGGACTCTTTAAATCCTTCTGTTTTTGATGTAATTGAGCCTCTGAATGAATGCTATTTATGGCATTTGC---CTGCATATAGGACATACCCCAGATGCCCATACCCTAGATTTTAGAAACATTATTCTTTGGAGAAGGAGCTTCACTCA---TGAGA-TTTGAATGGG-AAAAAATC---------------CCCAGACAGAACACCAGCA-----GGTTT---ctggttgtgtggcctaagcaagtcagcaaa-tctctctggaaactaatct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2625104 392 -   3067355 TCCCCTCCTTCCCCAGTACTCACCCTGCAGCTGCTCGATAAGCGTCCATGCCATCCGAGAGCCACTGGCATCAAACACCACATGGCCCTGACGGA-AGGAA-CATGTGGAGGAAGGCAAAGGGGATAAAAGCAGGAGTGA-AAGAGAACATCAGGGACTCTTTAAATCCTTCTGTTTTTGATGTAATTGAGCCTCTGAATGAATGCTATTTATGGCATTTGC---CTGCATATAGGACATACCCCAGATGCCCATACCCTAGATTTTAGAAACATTATTCTTTGGAGAAGGAGCTTCACTCA---TGAGA-TTTGAATGGG-AAAAAATC---------------CCCAGACAGAACACCAGCA-----GGCTT---ctggttgtgtggcctaagcaagtcagcaaa-tctctctggaaactaatct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30065446 392 + 171630274 TCCCCTCCTGCCCCTGTACTCACCCTGCAGCTGCTCAATAAGCGTCCATGCCATCCGAGAGCCGCTGGCATCAAACACCACATGGCCCTGACAGA-AGGAA-CATGTGGAGGAAGGCAAAGGGGACAAAAGCAGGAGTGA-AGGAGAACATCAGGGACTCTTTAAATCCTTCTGTTTTTGATGTAATTGAGCCTCTGAATGAATGCTATTTATGGCATTTGC---CTGCATATAGGACATACCCCAGATGCCCATACCCTAGATTTTAGAAACATTATTCTTTGGACAAGGAGCTTCACTCA---AGAGA-TTTGAATGTG-AAAAAGTC---------------CCCAGACAGAACACCAGCA-----GGCTT---ctggttgtgtggcctaagcaagtcagcaca-tctctctggaaactaatct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           212429 407 -    242197 TCCCCTCCTGCCCCTGTACTCACCCTGCAGCTGCTCGATAAGTGTCCATGCCATCCGAGAGCCGCTGGCATCAAACACCACATGGCCCTGACGGA-AGGAA-CATGTAGAGGAAGGCAAAGGGGACAAAAGCAGGATTGA-AAGAGAACATCAGGGACTCTTTAAATCTTTCTGTTTTTGATGTAACTGAGCCTCTGAATGAATGCTATTTATGGCATTTGC---CTGCATATAGGACATACCCCAGATGCCCATACCCTAGATTTTAGAAACATTATTCTTTGGACAAGGAGCTTCACTCA---TGAGA-TTTGAATGGG-TGTGAGCCACTGCACCCGGCCTGCACAGACAGAACACCAGCG-----GGCTT---ctggttgtgtggcctaagcaagtcagcaaa-tatctctggaaactaatct
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     205828 392 -   1771730 TCCCCTCCTGCCCCTGTACTCACCCTGCAGCTGCTCGATAAGCGTCCATGCCATCCGAGAGCCGCTGGCATCAAACACCACATGGCCCTGACGGA-AGGAA-CATGTGGAGGAAGGCAAAGGGGACAAAAGCAGGAGTGA-AAGAGAACATCAGGGACTCTTTAAATCCTTCTGTTTTTGATGTAACTGAGCCTCTGAATGAATGCTATTTATGGCACTTGC---CTGCATATAGGACATACCCCAGATGCCCATACCCTAGATTTTAGAAACATTATTCTTTGGACAAGGAGCTTCACTCA---TAAGA-TTTGAATGGG-AAAAAGTC---------------CCCAGGCAGAACATCAGCA-----GGCTT---ctggttgtgtggcctaagcaagtcagcaaa-tctctctggaaactaatct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     280141 392 -    457564 TCCCCTCCTGCCCCTGTACTCACCCTGCAGCTGCTCGATAAGCGTCCATGCCATCCGAGAGCCGCTGGCATCAAACACCACATGGCCCTGACGGA-AGGAA-CATGTGGAGGAAGGCAAAGGGGACAAAAGCAGGAGTGA-AAGAGAACATCAGGGACTCTTTAAATCTTTCTGTTTTTGATGTAATTGCGCCTCTGAATGAATGCTATTTATGGCATTTGC---CTGCATATAGGACATACCCCAGATGCCCATACCCTAGATTTTAGAAACATTATTCTTTGGACAAGGAGCTTCACTCA---TGAGA-TTTGAATGGG-AAAAAGTC---------------CCCAGACAGAACACCAGCA-----GGCTT---ctggttgtgtggcctaagcaagtcagcaaa-tctctctggaaactaatct
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                94115 389 + 123392446 TCCCCTCTTGCCACTGCACTCACCCTGTAGCTGCTCGATGAGTGTCCACGCCATCCGGGAGCCGCTAGCATCAAACACCACATGGCCCTGAGGGA-GGGGA--TCGTGGAGAAAGGCAAA--GGACAAAAGCAGAAGTGA-AGGAGGACATCAGGGACTCTTTGAATCCTTCTGCGTTTGATGCAACTGAGCCTCTGAATGAATGCTATTTACGGCATCTGC---CTGCATATAGGACATACCCCAGATGCCCATAGCCTAGATTTAAGAGACAATGTTCTTTGGAGAAG---CTTCAC-CA---TGAGA-TTTGAACGGG--AAAAATC---------------CCCAGAGAGAGCACCAGcagacctggcat---ctggctgtgtggccggagcaagtcaccaaa-tccctctaggcactaatct
i micMur3.chr6             C 0 I 443
s proCoq1.NW_012152574v1     588650 388 +    730504 TCCCCTCTTGCCACTGCACTCACCCTGCAGCTGCTCGATGAGCGTCCACGCCATCCGAGAGCCGCTGGCATCAAACACCACGTGGCCCTGAGGGA-GAGGA--GCGTGGAGGAAGGCAAA-GGGACAAAAGCAGAAGTGA-AGGAGAACATCAGGGACTCTTTGAATCCTTCTGCGTTTGATGTGATTGAGCCTCTGAATGAATGCTATTTATGGCAT-TGC---CTGCATATAGGACACACCCCAGATGCCCATACCCTAGATTTTAGAAACAATATTCTCTGGAGAAG---CTTCAC-CA---TGAGA-TTTGAATGGG--AAAAATC---------------CCCAGATAGAGCACCAGCAGACCTGGCGT---ctggctgtgtggcctgaacaagtcaccaaa-tccctct-ggcactaattt
i proCoq1.NW_012152574v1   I 169 C 0
s otoGar3.GL873550           100799 395 +  18854210 TCCCCTCTTGCCACTTCACTCACCCTGCAGCTGTTCAATAAGCGTCCATGCCATCCGAGAGCCGCTGGCATCAAACACCACATGGCCCTGAGGGA-GAGAAATATGTGGAGGAAGGCAAAGGGGACAAAAGCAGAAGTGA-AAGAGAACATCAGGGACTCTTTGAATCCTTCTGTGCTTGATGTAATTGAGCCTCTGAATGAATGCTATTTATGGCATTTGC---CTGCATATAGGACATACCCCAGATGCCCATACCCTAGATTTTAGAAATAATATTCTTTGGAGAAGAACCTTCAC-CA---TGAGA-TTTGAATGGG--AAAAATC---------------CCCAGATACAGCACCAGCAGACCTGGCTT---CT-gctgtgtggcctgaggaagtcaccaaa-tccctctggggactaattt
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57923855 370 -  94987271 AGCCCCCTCACACCCGGGCTCACCCTGTAGCTGCTCGATAAGCGTCCATGCCATCCGGGAGCCGCTGGCATCAAAGACCACGTGGCCCTGAGG---AGAAA-CATGTGGAGGAAGGCAGAGGGGATAAAAGCAGGAGGAA-AAGAGAACATCAGGGACTC--CGAAACCTTCTGTTTTTGATGTAATTGAGCTTCTGAATGAAGGCTATTTATGGCATCCGTCCGCTGCATGTAGGACACACCCCAGATGCACATACCCTAGATTCTGGAAACAGTATTCTTTGGAGAAGAAGCTTCCTTCATCTTAAGA-TCTGAATTAG--AGAGTCC---------------CCCCGAGAGAGGATCAGGA-----G--------------------------CAATCACCAAA-CCCTACTGGGCACTAATTT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26220636 393 +  26524999 ----CCCACGCCTCTGCACTCACCCTGCAGCTGCTCAATCAGAGTCCAGGCCATCCGTGAGCCGCTGGCATCAAACACCACGTGGCCCTGGGAGACGGGAA-CATGCGGAGGCAGGCAAAGGTGATAAAAGCAGGAACCAGAAGAGAGCATCAGGGACTCTCTGGATCCTTATGTTTTTGATGTAATTGAGCCTCTGAATGAATTCTATTTATGGCATTTGC---CTGCATATAGGACATACCCCAGATGCCCATACCCTAGATTCTAGAAACATTATTCTTTTGAAAAGAAGCTTCACTCA---TGGGA-TTTGAGTGGG-GAAATATC---------------CTCAG--AGAGCACCAGgagacctggctt---ctggctatgtgacttgagcatgtcaccaaa-tccctctgggcactaattt
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            28309 338 +    102524 CCCCCTCCTGTCCC-ACACTCACCCTGGAGCTGCTCTATAAGTGTCCACGCCATCCGAGAGCCGCTGGCATCAAACACCACGTGGCCCTGAGGGAGAGAAA-CATGCGGAGGAAGGCAAAGG----------------GA-CA--------CCGGGGCTCTTTCAAGCCTTATGCTTTTGATGTAATTGAGCTGCTGAATGAATGCTATTTATGGCACTTGC---CTGCATGTAGGACACAGCCCAGATGCCCATACCCTAGTTCTGAG--------------GAGGAAGGAGGCTCCTTGG---TGAGA-TCTGAGTGGA--AAAAGTC---------------CCC-GATAGAGCACCGGGA-----GACCTGCCCTGGCTGTGGGACCTGAGCAAGCCACGAAA-CC-----------------
i dasNov3.JH582591         C 0 C 0

a score=1209542.000000
s hg38.chr6_GL000254v2_alt   878314 93 +   4827813 tttca-ttttaaaaggaataagaagatgacctttcagactgttt----------tgtctttcaaaatcctatagttctCATCTGACTCATG-AATACTTGGTCTA
s panTro5.chr6             29840979 93 + 175400573 tttca-ttttaaaaggaataagaagatgacctttcagactgttt----------tgtctttcaaaatcccatagttctCATCTGACTCATG-ACTACTTGGTCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30075810 93 + 173848474 tttca-ttttaaaaggaataagaagatgacctttcagactgttt----------tgtctttcaaaatcctatagttctCATCTGACTCATG-ACTACTTGGTCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5882092 93 +   6154872 tttca-ttttaaaaggaataagaagatgacctttcagactgttt----------tgtctttcaaaatcctatagttctCATCTGACTCATG-AATACTTGGTCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74590913 94 + 122973662 tttcatttttaaaaagaataataagatgacctttcagactgttt----------tgtctttc-aaatcctacagttctCTTCTGACTCATGAAATAATTGGACTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30072171 93 + 172585720 tttca-ttttaaaaggaataacaagatgacctttcagactgttt----------tgtctttcaaaatcctacaattctCATCTGACTCATG-AATACTCGGACTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29735012 93 - 170955103 tttca-ttttaaaaggaataacaagatgacctttcagactgttt----------tgtctttcaaaatcctacaattctCATCTGACTCATG-AATACTCGGACTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2780426 93 -   2996164 tttca-ttttaaaaggaataacaagatgacctttcagactgttt----------tgtctttcaaaatcctacaattctCATCTGACTCATG-AATACTCGGACTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     534752 93 +    766320 tttca-ttttaaaacgaataagaagatgacctttcagactgttt----------tgtctttcaaaatcctacaattctCATCTGACTCATG-AATACTCGGACTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28990914 93 -  71996105 TTTCA-TTTTAAAAGCAATAAGAAGATGACCTTTCAGACTGTTT----------TGTCTTTCAAAATCCTACAATTCTCATCTGACTCATG-AATACTCGGACTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     167144 93 +    290775 tttca-ttttaaaacgaataagaagatgacctttcagactgttt----------tgtctttcaaaatcctacaattctCATCTGACTCATG-AATACTCGGACTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2625496 93 -   3067355 tttca-ttttaaaaggaataagaagatgacctttcagactgttt----------tgtctttcaaaatcctacagttctCATCTGACTCATG-AATACTCGGACTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30065838 90 + 171630274 tttca-ttttaaaatgaataaggagatgatctttcagattgttt----------tgtctttcaaaatcctacaatt---atctgactcATG-GATACTTGGACTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           212836 90 -    242197 tttca-ttttaaaacgaataaggagatgatctttcagactgttt----------tgtctttcaaaatcctaccatt---atctgactcATG-AATACTTGGACTA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     206220 90 -   1771730 tttca-ttttaaaatgaataaggaaatgatctttcagactgttt----------tgtctttcaaaatcctaccatt---atctgactcATG-AATACTTGGACTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     280533 90 -    457564 tttca-ttttaaaatgaataaggagatgatctttcagactgttt----------tgtctttcaaaatcctacaatt---atctgagtcATG-AATACTTGGACTA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     589038 92 +    730504 tccca-ctttaaaagcagtaaagagataatattccagactgttt----------tgtcttttaaaatcttacgattctCATCTGAC-CATA-TATACCTGAACTG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           101194 93 +  18854210 tctca-cttttaaaggaataaggagataacctttcaagctgctt----------catcttttaaaatcttacaattctCATCTGACTTATA-AATACCTAAACTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57924225 73 -  94987271 CCTTA-CTTTAAAAGGAATGAGGAGATGAATTCTCAAGTCGTTC----------TCTTTTTTTAAACTGTA---------------------AACACCTTGACCA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26221029 85 +  26524999 cccca-ctttgaaaggaat-aggacatgatttctcagactattt----------c-tacttcaaaatcctatgattctCACTGGACTCATA-AATACCT------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            28647 99 +    102524 ---CA-CTTTAAAGGGAAGAAG-CGGTGGTCTTTCCAACCACTTCCAACAGCCGTGCCTTTTAAAAGCCTGTGGTTCTCATCTGACTCATA-AATATCTGGACTG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                94504 443 + 123392446 I

a score=83972.000000
s hg38.chr6_GL000254v2_alt   878407 5 +   4827813 GTTTG
s panTro5.chr6             29841072 5 + 175400573 GTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30075903 5 + 173848474 GTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5882185 5 +   6154872 GTTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74591007 4 + 122973662 G-TTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30072264 5 + 172585720 GTTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29735105 5 - 170955103 GTTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2780519 5 -   2996164 GTTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     534845 5 +    766320 GTTTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28991007 5 -  71996105 GTTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     167237 5 +    290775 GTTTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2625589 5 -   3067355 GTTTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30065928 5 + 171630274 GTTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           212926 5 -    242197 GTTTG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     206310 5 -   1771730 GTTTG
i cebCap1.NW_016107755v1   C 0 I 310
s aotNan1.NW_018509740v1     280623 5 -    457564 GTTTG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                94947 5 + 123392446 GTTTG
i micMur3.chr6             I 443 C 0
s proCoq1.NW_012152574v1     589130 5 +    730504 GTTTG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           101287 5 +  18854210 ATTTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57924298 5 -  94987271 GCTTG
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            28746 5 +    102524 GTTTG
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26221114 0 +  26524999 C

a score=1494979.000000
s hg38.chr6_GL000254v2_alt   878412 113 +   4827813 AAAAGAAATGAGGGGAGGGGTTTAAAAAAATGGAATACATCA-TTTTTTTTCCTCTAGT-CTTTGATGGGTTCTTCTAATTTGAAG-GTCCCTACTTCTCTGGTCGGAGACTGATT
s panTro5.chr6             29841077 113 + 175400573 AAAAGAAATGAGGGGAGGGGTTTAAAAAAATGGAATACATCA-TTTTTTTTCCTCTAGT-CTTTGATGGGTTCTTCTAATTTGAAG-GTCCCTACTTCTCTGGTCGGAGACTGATT
i panTro5.chr6             C 0 I 1
s panPan2.chr6             30075908 112 + 173848474 AAAAGAAATGAGGGGAGGGGTTTAAAAAAATGGAATACATCA--TTTTTTTCCTCTAGT-CTTTGATGGGTTCTTCTAATTTGAAG-GTCCCTACTTCTCTGGTCGGAGACTGATT
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01015250v1    5882190 112 +   6154872 AAAAGAAATGAGGGGAGGGGTTT-AAAAAATGGAATACATCA-TTTTTTTTCCTCTAGT-CTTTGATGGGTTCTTCTAATTTGAAG-GTCCCTACTTCTCTGGTCGGAGACTGATT
i gorGor5.CYUI01015250v1   C 0 I 1
s nomLeu3.chr1a            74591011 113 + 122973662 AAAAGAAACGAGGGGAGGGGTTT--AAAAATGGAATACATCA-TTTTTTTTCTTCTAGTCCTTTGATGGCTTCTTCCAATTTGAAGAATCCCTACTTCTCTGGTTGGAGACTGATT
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             30072269 113 + 172585720 AAAAGAAATGAGGGGAGGGGTTTAAAAAAATGGAATACATCC-TTTTTTTCCCTCTAGT-CTTTGATGGGTTTTTCGAATTTGAAG-ATCCCTACTTCTCTGGTCGGAGACTGATT
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29735110 113 - 170955103 AAAAGAAATGAGGGGAGGGGTTTAAAAAAATGGAATACATCC-TTTTTTTCCCTCTAGT-CTTTGATGGGTTTTTCGAATTTGAAG-ATCCCTACTTCTCTGGTCGGAGACTGATT
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2780524 113 -   2996164 AAAAGAAATGAGGGGAGGGGTTTAAAAAAATGGAATACATCC-TTTTTTTCCCTCTAGT-CTTTGATGGGTTTTTCGAATTTGAAG-ATCCCTACTTCTCTGGTCGGAGACTGATT
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012002711v1     534850 113 +    766320 AAAAGAAATGAGGGGAGGGGTTTAAAAAAATGGAATACATCC-TTTTTTTCCCTCTAGT-CTTTGATGGGTTTTTCGAATTTGAAG-ATCCCTACTTCTCTGGTCGGAGACTGATT
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17            28991012 111 -  71996105 AAAAGAAATGAGGGGAGGGGTTTAAAAAAATGGAATACATCC---TTTTTCCCTCTAGT-CTTTGACGGGTTTTTCGAATTTGAAG-ATCCCTGCTTCTCTGGTCAGAGACTGATT
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012099233v1     167242 113 +    290775 AAAAGAAATGAGGGGAGGGGTTTAAAAAAATGGAATACATCC-TTTTTTTCCCTCTAGT-CTTTGATGGGTTTTTCGAATTTGAAG-ATCCCTACTTCTCTGGTCGGAGACTGATT
i manLeu1.NW_012099233v1   C 0 I 1
s colAng1.NW_012115566v1    2625594 112 -   3067355 AAAAGAAATGAGGGGAGGGGTTTAAAAAAATGGAATACATCC--TTTTTTCCCTCCAGT-CTTTGATGGGTTTTTCGAATTTGAAG-ATCCCTACTTCTCTGGTCAGAGACTGATT
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chr4             30065933 114 + 171630274 AAAAGAAACAAGGGAAGGAGTTTAAAAAACTGGAATACATCATTTTTTTCCCCTCTAGT-CTTTGATGGGTTTTTCTAATTTGAAG-ATCCCTACTTCTCTGGCTGGAGACTGATC
i calJac3.chr4             C 0 I 1
s saiBol1.JH378357           212931 114 -    242197 AAAAGAAACAAGGGAAGGAGTTTAAAAAACTGGAATACATCATTTATTTTCCCTCTAGT-CTTTGATGGGTTTTTCTAATTTGAAG-ATCCCTACTTCTCTGGCTGGAGACTGATC
i saiBol1.JH378357         C 0 I 1
s cebCap1.NW_016107755v1     206625 114 -   1771730 aaaagaaaCAAGGGAAGGAGTTTAAAAAACTGGAATACATCATTTTTTTCCCCTCTAGT-CTTTGATGGGTTTTTCTAATTTGAAG-ATCCCTACTTCTCTGGCTGGAGACTGATC
i cebCap1.NW_016107755v1   I 310 I 1
s aotNan1.NW_018509740v1     280628 114 -    457564 AAAAGAAACAAGGGAAGGAGTTAAAAAAACTGGAATACATCATTTTTTTCCCCTCTAGT-CTTTGATGGGTTTTTCTAATTTGAAG-ATCCCTACTTCTCTGGCCAGAGACTGATC
i aotNan1.NW_018509740v1   C 0 I 1
s micMur3.chr6                94952 112 + 123392446 ACAAGAAATGAGGGGAGGGGCTGAAAAAAATTGAATACATCA-TTTTCCCCCTTCTAGT-CTTTAATGTGTTTTTCTGGTTT-GGG-ATCCCTACTCCCCTGGTCTGAGATGGATT
i micMur3.chr6             C 0 I 1
s proCoq1.NW_012152574v1     589135 113 +    730504 ACAAGAAATGAGGGGAGGGGCTGAAAGAAATGGAATAAATCA-TTTTTTCCCTTCTAGT-CTTTAATGTGTTTTTCTGGTTTGGGG-ATCCCTACTCCCCCGGTCTGAGGCGGATT
i proCoq1.NW_012152574v1   C 0 I 76
s otoGar3.GL873550           101292 113 +  18854210 AAAAAAAAGGAGAGGAGGGGTTGAAAGAAATGTAATACATCG-ATTTTTTCCTTCTAGT-CTTTAATGGGTTTTTCTGACTTAGGC-ATCTTTACTCCCCTAGTCTGACAGTCATT
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57924303  93 -  94987271 ----------------------AAAAGCACTAGAATAGAGCAATTCTTTTCACTGCCAT-ATTTTGTATGGCTTTCTGGTTTGGGGGGGTCCCACCTCCATAGTCTAAGACGGCTT
i mm10.chr17               C 0 I 9
s canFam3.chr35            26221114  96 +  26524999 ----------AGGGGACAGGTTGGAAGAAATGGAATAT-----CCCTTTTCCTTCTAGT-CTCTTACATGTTTTTCT--CTTACAG-GTCCCC-CAACTCCCATCTGAGCCTATAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            28751  86 +    102524 -----AAATGAGGAAAGAGGTT---AAAAAGGAAACAC-----TGTTCTCCCTTCTGGA-CTTTTGCGGG---------------G-GCCCCTGCTCCCCTGGCCTGAGGCCGATG
i dasNov3.JH582591         C 0 C 0

a score=314654.000000
s hg38.chr6_GL000254v2_alt   878525 28 +   4827813 -CTGCAAAGAAGTAACTGAGAAAAACAGA
s panTro5.chr6             29841191 28 + 175400573 -CTGCAAAGAAGTAACTGAGAAAAACAGA
i panTro5.chr6             I 1 C 0
s panPan2.chr6             30076021 28 + 173848474 -CTGCAAAGAAGTAACTGAGAAAAACAGA
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01015250v1    5882303 28 +   6154872 -CTGCAAAGAAGTAACTGAGAAAAACAGA
i gorGor5.CYUI01015250v1   I 1 C 0
s nomLeu3.chr1a            74591125 28 + 122973662 -TTGCAAAGAAGTAACTGAGAAAAACAGG
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30072383 28 + 172585720 -TTGCAAAGAAGTAACTAAGAAAAACAGA
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29735224 28 - 170955103 -TTGCAAAGAAGTAACTAAGAGAAACAGA
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2780638 28 -   2996164 -TTGCAAAGAAGTAACTAAGAGAAACAGA
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1     534964 28 +    766320 -TTGCAAAGAAGTAACTAAGAAAAGCAGA
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17            28991124 28 -  71996105 -TTGCAAAGAAGTAACTAAGAAAAACAGA
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012099233v1     167356 28 +    290775 -TTGCAAAGAAGTAACTAAGAAAAACAGA
i manLeu1.NW_012099233v1   I 1 C 0
s colAng1.NW_012115566v1    2625707 28 -   3067355 -TTGCAAAGAAGTAACTAAGAAAAACAGA
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chr4             30066048 28 + 171630274 -TTGAAAAGAAGTAACTGAGAAAAACCAA
i calJac3.chr4             I 1 C 0
s saiBol1.JH378357           213046 28 -    242197 -TTGAAAAGAAGTAACGGAGAAAAACCAA
i saiBol1.JH378357         I 1 C 0
s cebCap1.NW_016107755v1     206740 28 -   1771730 -TTGAAAAGAAGTAACGGAGAAAAACCAA
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018509740v1     280743 28 -    457564 -TTGAAAATAAGTAACTGAGAAAAACCAA
i aotNan1.NW_018509740v1   I 1 C 0
s micMur3.chr6                95065 28 + 123392446 -CTGCAGAGAAGTGCCTGAGAAAGACAGA
i micMur3.chr6             I 1 I 82
s otoGar3.GL873550           101406 28 +  18854210 -TTGCAGAGAAGTAACAGAGAAAGACAGA
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57924405 23 -  94987271 -TGACAGAAAGATAACTGAGAAAA-----
i mm10.chr17               I 9 C 0
s canFam3.chr35            26221210 11 +  26524999 -TTGCAGG-------CTGA----------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            28837 25 +    102524 ATCGCA-AGAGGGAGCTGAGAACAGG---
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     589248 76 +    730504 I

a score=285661.000000
s hg38.chr6_GL000254v2_alt   878553  32 +   4827813 GAATGCATGT--------------------------------------------------------------------------TTGT---AGA--------AGGTGCCTCT-TGGGA
s panTro5.chr6             29841219  32 + 175400573 GAATGCATGT--------------------------------------------------------------------------TTGT---AGA--------AGGTGCCTCT-TGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30076049  32 + 173848474 GAATGCATGT--------------------------------------------------------------------------TTGT---AGA--------AGGTGCCTCT-TGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5882331  32 +   6154872 GAATGCATGT--------------------------------------------------------------------------TTGT---AGA--------AGGTGCCTCT-CGGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74591153  32 + 122973662 GAATGCATGT--------------------------------------------------------------------------TTGT---AGA--------AGATGCCTCT-TGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30072411  32 + 172585720 GAATGCATGT--------------------------------------------------------------------------TTGT---AGA--------AGGTGCTTCT-CGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29735252  32 - 170955103 GAATGCATGT--------------------------------------------------------------------------TTGT---AGA--------AGGTGCTTCT-AGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2780666  32 -   2996164 GAATGCATGT--------------------------------------------------------------------------TTGT---AGA--------AGGTGCTTCT-AGGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     534992  32 +    766320 GAATGCAGGT--------------------------------------------------------------------------TTGT---AGA--------AGGTGCTTCT-CGGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28991152  32 -  71996105 GAATGCATGT--------------------------------------------------------------------------TTGT---AGA--------AGGTGCTTCT-CGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     167384  32 +    290775 GAATGCATGT--------------------------------------------------------------------------TTGT---AGA--------AGGTGCTTCT-CGGGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2625735  32 -   3067355 GAATGCATGT--------------------------------------------------------------------------TTGT---AGA--------AGGTGCTTCT-CGGGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30066076  32 + 171630274 GAATGTATCT--------------------------------------------------------------------------TTGT---AGA--------AGGTGCCTCT-TGGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           213074  32 -    242197 GAATGTATCT--------------------------------------------------------------------------TTGC---AGA--------AGGTGCCTCT-TGGTA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     206768  32 -   1771730 GAATGTATCT--------------------------------------------------------------------------TTGT---AGA--------AGGTGCCTCT-TGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     280771  32 -    457564 GAATGTATCT--------------------------------------------------------------------------TTGT---AGA--------AGGTGCCTCT-CGGGA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           101434  34 +  18854210 --ATGCATGT--------------------------------------------------------------------------TTGTAGGAGA--------AGGCAGCTCTGAGGGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57924428  22 -  94987271 -------TGT--------------------------------------------------------------------------ATCT--------------AGGGACCTTC-CAGGC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26221221  28 +  26524999 ---TGCATGC--------------------------------------------------------------------------TTGC---AGG--------GGAAGTATGG-CGTG-
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            28862 114 +    102524 GGGAGCATGTGGAGGGGCCTGGGGTGTCCCGGGGAGATGGGGGGCTGGAGGGAGCTGCCACGGCTCACCGAGAACGGGAGGAGCTTGC---GGAGGGGCCTGGGGTGTCCCA-GGGGA
i dasNov3.JH582591         C 0 I 176
e micMur3.chr6                95093  82 + 123392446 I
e proCoq1.NW_012152574v1     589248  76 +    730504 I

a score=135897.000000
s hg38.chr6_GL000254v2_alt   878585 14 +   4827813 GTCTCTCTCAAGAT
s panTro5.chr6             29841251 14 + 175400573 GTCTCTCTCGAGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30076081 14 + 173848474 GTCTCTCTCGAGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5882363 13 +   6154872 GTCTCTCTCGAGA-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74591185 14 + 122973662 GTCTCTCTCAAGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30072443 14 + 172585720 GTCTCTCTTGAGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29735284 14 - 170955103 GTCTCTCTTGAGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2780698 14 -   2996164 GTCTCTCTTGAGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     535024 14 +    766320 GTCTCTCTTGAGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28991184 14 -  71996105 GTCTCTCTTGAGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     167416 14 +    290775 GTCTCTCTTGAGAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2625767 14 -   3067355 GTCTCTCTTGAGAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30066108 14 + 171630274 GTTTCTCTCAAGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           213106 14 -    242197 GTCTCTCTCGAGAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     206800 14 -   1771730 GTCTCTCTCGAGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     280803 14 -    457564 GTCTCTCTCAAAAT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           101468 11 +  18854210 GGTTTTCTTGA---
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57924450 14 -  94987271 ATCTCCCTTTTCAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26221249  9 +  26524999 ----CTCTCAGCA-
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            29152 14 +    102524 GGCTCACTGAAAAC
i dasNov3.JH582591         I 176 C 0
e micMur3.chr6                95093 82 + 123392446 I
e proCoq1.NW_012152574v1     589248 76 +    730504 I

a score=320073.000000
s hg38.chr6_GL000254v2_alt   878599 32 +   4827813 ----------------------TGGGAAGAC--------AGGGGAGTATGAAGGAA---GTTTTA
s panTro5.chr6             29841265 32 + 175400573 ----------------------TGGGAAGAC--------AGGGGAGTATGAAGGAA---GTTGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30076095 32 + 173848474 ----------------------TGGGAAGAC--------AGGGGAGTATGAAGGAA---GTTGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5882376 32 +   6154872 ----------------------TGGGAAGAC--------AGGGGAGTATGAAGGAA---GTTGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74591199 32 + 122973662 ----------------------TGGGAAGAC--------AGGGGAGTATGAAGGAA---GTTGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30072457 32 + 172585720 ----------------------TGGGAAGAC--------AAGGGAGTATGAAGGAA---GTTGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29735298 32 - 170955103 ----------------------TGGGAAGAC--------AAGGGAGTATGAAGGAA---GTTGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2780712 32 -   2996164 ----------------------TGGGAAGAC--------AAGGGAGTATGAAGGAA---GTTGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     535038 35 +    766320 ----------------------TGGGAAGAC--------AGGGGAGTATGAAGGAAGTTGTTGTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28991198 34 -  71996105 ----------------------TGGGAAGAT---------GGGGAGTATGAAGGAAGTTGTTGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     167430 35 +    290775 ----------------------TGGGAAGAC--------AGGGGAGTATGAAGGAAGTTGTTGTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2625781 35 -   3067355 ----------------------TGGGAAGAC--------AGGGGAGTATAAAGGAAGTTGTTGTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30066122 35 + 171630274 ----------------------TGGGAAGAC--------AGGGGAGGATCAAGGAAGTTGTTGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           213120 35 -    242197 ----------------------TGGGGAGAC--------AGAGGAGTATCAAGGAAGTTGTTGTA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     206814 34 -   1771730 ----------------------TGGGAAGAC--------GAGGGAGTATCAAGGAAGTTGTT-TA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     280817 35 -    457564 ----------------------TGGGAAGAC--------AGGGGAGTATCAAGGAAGTTGTTGTA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     589324 33 +    730504 ----------------------TGGCAAGAC--------AGAGGAGTGTGAAGGAAGTTGCTG--
i proCoq1.NW_012152574v1   I 76 I 2
s otoGar3.GL873550           101479 32 +  18854210 ----------------------TGGCAACAC--------AGGGGAGTATGAAGGAAA-TGCTA--
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               57924464 25 -  94987271 ----------------------------------------GGGGTGCACAACAGAAGCTGCTGTA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26221258 31 +  26524999 ------------------------GGAGGAC---------GGGGAATGTGAGGGGA-TTGCTGTC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            29166 65 +    102524 GGGGGGAGCGTGCAGAGGGGCCTGGGGTGTCCAGCGGGGACGGGGGGCTGGAGGGAGCTGCCGCG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                95093 82 + 123392446 I

a score=5676675.000000
s hg38.chr6_GL000254v2_alt   878631 286 +   4827813 ACTCACAGAGACACCCTCAAAGGACGAAGAGTTCATTGCCCGGTAGATTTGGTCGGTAATGGTCTGGTTGTTGTAGTTGAAGTCCTCCAGGCGCACACCAGAACGGCCGCCTCCTCCAGATGTCTTGTTCAGGGCCAGTGCCAAGGCCCAGATGGCATCATAGGCCAGCGGTGCCTCCTGGAAGCCTCCTGTCTCCTCAGGGTGTCTTTTCAGTCGCTTGGTTAGTTTCTCCACAAATTCCTGGGATGTCTTGGGAGGAAAAAATCATGAGG--AAAGA--ACTGAAATG
s panTro5.chr6             29841297 286 + 175400573 ACTCACAGAGACACCCTCAAAGGACGAGGAGTTCATTGCCCGGTAGATTTGGTCGGTAATGGTCTGGTTGTTGTAGTTGAAGTCCTCCAGGCGCACGCCGGAACGGCCGCCTCCTCCAGATGTCTTGTTCAGGGCCAGTGCCAAGGCCCAGATGGCATCATAGGCCAGCGGTGCCTCCTGGAAGCCTCCTGTCTCTTCAGGGTGTCTTTTCAGTCGCTTGGTTAGTTTCTCCACAAATTCCTGGGATGTCTTGGGAGGAAAAAATCATGAGG--AAAGA--ACTGAAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30076127 286 + 173848474 ACTCACAGAGACACCCTCAAAGGACGAGGAGTTCATTGCCCGGTAGATTTGGTCGGTAATGGTCTGGTTGTTGTAGTTGAAGTCCTCCAGGCGCACGCCGGAACGGCCGCCTCCTCCAGATGTCTTGTTCAGGGCCAGTGCCAAGGCCCAGATGGCATCATAGGCCAGCGGTGCCTCCTGGAAGCCTCCTGTCTCCTCAGGGTGTCTTTTCAGTCGCTTGGTTAGTTTCTCCACAAATTCCTGGGATGTCTTGGGAGGAAAAAATCATGAGG--AAAGA--ACTGAAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5882408 286 +   6154872 ACTCACAGAGACACCCTCAAAGGACGAGGAGTTCATTGCCCGGTAGATTTGGTCGGTAATGGTCTGGTTGTTGTAGTTGAAGTCCTCCAGGCGCACGCCGGAACGGCCGCCTCCTCCAGATGTCTTGTTCAGGGCCAGTGCCAAGGCCCAGATGGCATCATAGGCCAGCGGTGCCTCCTGGAAGCCTCCTGTCTCCTCAGGGTGTCTTTTCAGTCGCTTGGTTAGTTTCTCCACAAATTCCTGGGATGTCTTGGGAGGAAAAAATCATGAGG--AAAGA--ACTGAAATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74591231 286 + 122973662 ACTCACAGAGACACCCTCATAGGACGAGGAGTTCATTGCCCGGTAGATTTGGTCGGTAATGGTCTGGTTGTTGTAGTTGAAGTCCTCCAGGCGCACGCCGGAACGGCCGCCTCCTCCAGATGTCTTGTTCAGGGCCAGTGCCAAGGCCCAGATGGCATCATAGGCCAGCGGTGCCTCCTGGAAGCCTCCTGTCTCCTCCGGGTGTCTTTTCAGTCGCTTGGTTAGTTTCTCCACAAATTCCTGGGATGTCTTGGGAGGAAAAAATCATGAGG--AAAGA--ACTGAAATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30072489 286 + 172585720 ACTCACAGAGACACCCTCAAAGGACGAGGAGTTCATTGCCCGGTAGATTTGGTCGGTAATGGTCTGGTTGTTGTAGTTGAAGTCCTCCAGGCGCACGCCAGAACGGCCGCCTCCTCCAGATGTCTTGTTCAGGGCCAATGCCAAGGCCCAGATGGCATCATAGGCCAGCGGTGCCTCCTGGAAACCTCCTGTCTCCTCAGGGTGTCTTTTCAGTCGCTTGGTTAGTTTCTCCACAAATTCCTGGGATGTCTTAGGAGGAAAAAATCATGAGG--AAAGA--ACTGAAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29735330 286 - 170955103 ACTCACAGAGACACCCTCAAAGGACGAGGAGTTCATTGCCCGGTAGATTTGGTCGGTAATGGTCTGGTTGTTGTAGTTGAAGTCCTCCAGGCGCACGCCTGAACGGCCGCCTCCTCCAGATGTCTTGTTCAGGGCCAATGCCAAGGCCCAGATGGCATCATAGGCCAGCGGTGCCTCCTGGAAACCTCCTGTCTCCTCAGGGTGTCTTTTCAGTCGCTTGGTTAGTTTCTCCACAAATTCCTGGGATGTCTTAGGAGGAAAAAATCATGAGG--AAAGA--ACTGAAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2780744 286 -   2996164 ACTCACAGAGACACCCTCAAAGGACGAGGAGTTCATTGCCCGGTAGATTTGGTCGGTAATGGTCTGGTTGTTGTAGTTGAAGTCCTCCAGGCGCACGCCTGAACGGCCGCCTCCTCCAGATGTCTTGTTCAGGGCCAATGCCAAGGCCCAGATGGCATCATAGGCCAGCGGTGCCTCCTGGAAACCTCCTGTCTCCTCAGGGTGTCTTTTCAGTCGCTTGGTTAGTTTCTCCACAAATTCCTGGGATGTCTTAGGAGGAAAAAATCATGAGG--AAAGA--ACTGAAATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     535073 286 +    766320 ACTCACAGAGACACCCTCAAAGGACGAGGAGTTCATTGCCCGGTAGATTTGGTCGGTAATGGTCTGGTTGTTGTAGTTGAAGTCCTCCAGACGCACGCCAGAACGGCCGCCTCCTCCAGATGTCTTGTTCAGGGCCAATGCCAAGGCCCAGATGGCATCATAGGCCAGCGGTGCCTCCTGGAAACCTCCTGTCTCCTCAGGGTGTCTTTTCAGTCGCTTGGTTAGTTTCTCCACAAATTCCTGGGATGTCTTGGGAGGAAAAAATCATGAGG--AAAGA--ACTGAAATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28991232 286 -  71996105 ACTCACAGAGACACCCTCAAAGGACGAGGAGTTCATTGCCCGGTAGATTTGGTCGGTAATGGTCTGGTTGTTGTAGTTGAAGTCCTCCAGGCGCACGCCAGAACGGCCGCCTCCTCCAGATGTCTTGTTCAGGGCCAATGCCAAGGCCCAGATGGCATCATAGGCCAGCGGTGCCTCCTGGAAACCTCCTGTCTCCTCAGGATGTCTTTTCAGTCGCTTGGTTAGTTTCTCCACAAATTCCTGGGATGTCTTGGGAGGAAAAAATCATGAGG--AAAGA--ACTGAAATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     167465 286 +    290775 ACTCACAGAGACACCCTCAAAGGACGAGGAGTTCATTGCCCGGTAGATTTGGTCGGTAATGGTCTGGTTGTTGTAGTTGAAGTCCTCCAGGCGCACGCCAGAACGGCCGCCTCCTCCAGATGTCTTGTTCAGGGCCAATGCCAAGGCCCAGATGGCATCATAGGCCAGCGGTGCCTCCTGGAAACCTCCTGTCTCCTCAGGGTGTCTTTTCAGTCGCTTGGTTAGTTTCTCCACAAATTCCTGGGATGTCTTGGGAGGAAAAAATCATGAGG--AAAGA--ACTGAAATG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2625816 286 -   3067355 ACTCACAGAGACACCCTCAAAGGACGAGGAGTTCATTGCCCGGTAGATTTGGTCGGTAATGGTCTGGTTGTTGTAGTTGAAGTCCTCCAGGCGCACGCCAGAACGGCCGCCTCCTCCAGATGTCTTGTTCAGGGCCAATGCCAAGGCCCAGATGGCATCATAGGCCAGCGGTGCCTCCTGGAAACCTCCTGTCTCCTCAGGGTGTCTTTTCAGTCGCTTGGTTAGTTTCTCCACAAATTCCTGGGATGTCTTGGGAGGAAAAAATCATGAGG--AAAGA--ACTGAAATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30066157 286 + 171630274 ACTCACAGAGACACCCTCAAAGGACGAGGAGTTCATTGCCCGGTAGATTTGGTCGGTAATGGTCTGATTGTTGTAGTTGAAGTCCTCCAGGCGCACACCGGAATGGCCGCCTCCTCCAGATGTCTTGTTCAGGGCCAATGCCAAGGCCCAGATGGCATCGTAGGCCAGCGGTGCCTCCTGGAAGCCTCCTGTCTCCTCAGGGTGTCTTTTCAGTCGCTTGGTTAGTTTTTCTACAAATTCTTGGGATGTCTTGGGGGGAAAAAATCATGAGG--AAAGA--ACTGAAATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           213155 286 -    242197 ACTCACAGAGACACCCTCAAAGGACGAGGAGTTCATTGCCCGGTAGATTTGATCGGTAATGGTCTGGTTGTTGTAGTTGAAGTCCTCCAGGCGCACGCCAGAACGGCCGCCTCCTCCAGATGTCTTGTTCAGGGCCAATGCCAAGGCCCAGATGGCATCGTAGGCCAGCGGTGCCTCCTGGAAGCCTCCTGTCTCCTCAGGGTGTCTTTTCAGTCGCTTGGTTAGTTTTTCCACAAATTCCTGGGATGTCTTGGGAGGAAAAAATCATGAGG--AAAGA--ACTGAAATG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     206848 286 -   1771730 ACTCACAGAGACACCCTCAAAGGACGAGGAGTTCATCGCCCGGTAGATTTGGTCGGTAATGGTCTGGTTGTTGTAGTTGAAGTCCTCCAGGCGCACGCCGGAACGGCCGCCTCCTCCAGATGTCTTGTTCAGGGCCAATGCCAAGGCCCAGATGGCATCATAGGCCAGCGGTGCCTCCTGGAAGCCTCCTGTCTCCTCAGGGTGTCTTTTCAGTCGCTTGGTTAGTTTTTCCACAAATTCCTGGGATGTCTTGGGAGGAAAAAATCACGAGG--AAAGA--ACTGAAATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     280852 286 -    457564 ACTCACAGAGACACCCTCAAAGGACGAGGAGTTCATTGCCCGGTAGATTTGGTCGGTAATGGTCTGGTTGTTGTAGTTGAAGTCTTCCAGGCGCACGCCGGAACGGCCGCCTCCTCCGGATGTCTTGTTCAGGGCCAATGCCAAGGCCCAGATGGCATCGTAGGCCAGCGGTGCCTCCTGGAAGCCTCCTGTCTCCTCAGGGTGTCTTTTCAGTCGCTTGGTTAGTTTTTCCACAAATTCCTGGGATGTCTTGGGAGGAAAAAATCATGAGG--AAAGA--AATGAAATG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                95175 285 + 123392446 ACTCACAGAGACACCCTCAAAGGACGAGGAGTTCATTGCCCGGTAGATCTGGTCAGTAATGGTCTGGTTGTTGTAGTTGAAGTCCTCCAGGCGCACGCCGGCCCGGCCACCCGCTCCGGATGTCTTGTTCAGGGCCAGCGCCAAGGCCCAGATGGCATCATAGGCCAGCGGTGCCTCCTGGAAGCCTCCTGTCTCCTCAGGGTGTCTTTTCAGGCGCTTGGTTAGTTTCTCCACAAATTCCTGGGATGTCTTGAAAGGGAAGAA-CATGAGG--AAAGA--ATTGGAATG
i micMur3.chr6             I 82 C 0
s proCoq1.NW_012152574v1     589359 285 +    730504 ACTCACAGAGACACCCTCAAAGGACGAGGAGTTCATTGCCCGGTAGATTTGGTCAGTAATGGTCTGGTTGTTGTAGTTGAAGTCCTCCAGGCGCACGCCGGACCGGCCACCCCCTCCGGATGTCTTGTTCAGGGCCAGCGCCAAGGCCCAGATGGCATCGTAGGCCAGCGGTGCCTCCTGGAAGCCTCCTGTCTCCTCAGGGTGTCTTTTCAGGCGCTTGGTTAGTTTCTCCACAAATTCCTGGGATGTCTTGAAAGGGAAGAA-CATGAGG--AAAGA--ACTGGAATG
i proCoq1.NW_012152574v1   I 2 C 0
s otoGar3.GL873550           101513 287 +  18854210 ACTCACAGAGACACCCTCAAAAGATGAGGAGTTCATTGCCCGGTAGATTTGGTCAGTAATGGTCTGGTTGTTGTAGTTGAAGTCCTCCAAGCGTACACCAGAACGGCCACCACCTCCAGATGTCTTGTTCAGGGCCAGAGCTAAGGCCCAGATGGCATCATAGGCCAGCGGTGCCTCCTGGAAGCCTCCTGTCTCCTCAGGGTGTCTTTTCAGTCGCTTGGTTAGTTTCTCCACAAATTCCTGGGATGTCTTCAAAGGGAAGAA-CATGAGGAAAAAGA--TTTGTAATG
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               57924489 285 -  94987271 ACTCACAGAAACACCCTCAAAGGAGGAGGAGTTCATGGCCCGGTAGATTTGGTCTGTAATGGTCTGGTTGTTGTAGTTAAAGTCCTCCAGGCGCACTCCTGAACGGCCACCTCCTCCAGAGGTCTTGTTCAAGGCCAAAGCCAAGGCCCAGATAGCATCATAGGCCAGTGGTGCCTCCTGGAAGCCTCCAGTCTCCTCAGGGTGTCTTTTCAGCCGCTTGGTTAGTTTCTCCACAAATTCCTGTGATGTCT--GGAGGGAAGAA-CAAGAGG--AGAGAGCATTGAAATG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26221289 280 +  26524999 ACTCACAGAGACACCCTCAAAGGACGAGGAGTTCATTGCGCGGTAGATTTGGTCTGTGATCGTCTGGTTGTTGTAGTTGAAGTCTTCCAGGCGCACCCCCGAACGGCCGCTCCCTCCAGATGTCTTGTTCAGGGCCAATGCCAAGGCCCAGATGGCATCATAGGCCAGCGGTGCCTCCTGGAAGCCGCCTGTCTCCTCAGGGTGTCTCTTGAGTCTCTTGGTCAGTTTCTCCACAAACTCCTGGGATGTCTGCACAGGGAAGGA-CAGGGAG--AAACG--GCTG-----
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            29231 284 +    102524 GCTCACCGAGACGCCCTCGAAGGAGGAGGAGTTCATGGCCCTGTAGATCTGCTCGGTGATGGTCTGGTTGTTGTAGTTGAAGTCCTCCAAGCGCACGCCCGAGCGGCCGCCGCCGCCGGAGGTCTTGTTGAGGGCCAGCGCCAAGGCCCAGATGGCGTCGTACGCCAGCGGTGCCTCCTGGAAGCCGCCCGTCTCCTCAGGGTGTCTCTTCAGTCGCTTGGTCAGTTTCTCCACGAACTCCTGGGATGTCTGGGGAAGGAACAA--AGGGAG--AGAGG--GCTggaggg
i dasNov3.JH582591         C 0 I 252

a score=1556767.000000
s hg38.chr6_GL000254v2_alt   878917 107 +   4827813 TGTGTGGGTGT--GGGGGAAGGGGTGCAA-TCCAATTCTGACTCAATCACTTCTACTTGAATGGATGG-TTTGTGTTACTGTTGTCAGATTGGACACATGTACATTCAAAA
s panTro5.chr6             29841583 107 + 175400573 TGTGTGGGTGC--GGGGGAAGGGGTGCAA-TCCAATTCTGACTCAAACACTTCTACTTGAATGGATGG-TTTGTGTTACTGTTGTCAGATTGGATACATGTACATTCAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30076413 107 + 173848474 TGTGTGGGTGC--GGGGGAAGGGGTGCAA-TCCAATTCTGACTCAAACACTTCTACTTGAATGGATGG-TTTGTGTTACTGTTGTCAGATTGGATACATGTACATTCAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5882694 107 +   6154872 TGTGTGGGTGC--GGGGGAAGGGGTGCAA-TCCAATTCTGACTCAAACACTTCTACTTGAATGGATGG-TTTGTGTTACTGTTGTCAGATTGGACACATGTACATTCAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74591517 107 + 122973662 TGTGTGGGTGC--GGGGGAAGGGGTGCAA-TCCAATTCTGACTCAAACACTTCTACTTGAATGGATGG-TTTGTGTTACTGTTGTCAGATTGGACACATGTACATTCAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30072775 107 + 172585720 TGTGTGGGTGT--GGGGGAAGGGGTGCAA-TCCAATTCTGGCTCAAACACTTCTACTTGAATGGATGG-TTTGTGTTACTGTTGTCAGATTGGGCATATGTACATTCAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29735616 107 - 170955103 TGTGTGGGTGT--GGGGGAAGGGGTGCAA-TCCAATTCTGGCTCAAACACTTCTACTTGAATGGATGG-TTTGTGTTACTGTTGTCAGATTGGGCATATGTACATTCAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2781030 107 -   2996164 TGTGTGGGTGT--GGGGGAAGGGGTGCAA-TCCAATTCTGGCTCAAACACTTCTACTTGAATGGATGG-TTTGTGTTACTGTTGTCAGATTGGGCATATGTACATTCAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     535359 107 +    766320 TGTGTGGGTGT--GGGGGAAGGGGTGCAA-TCCAATTCTGGCTCAAACACTTATACTTGAATGGATGG-TTTGTGTTACTGTTGTCAGATTGGGCATATGTACATTCAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28991518 107 -  71996105 TGTGTGGGTGT--GGGGGAAGGGGTGCAA-TCCAATTCTGGCTCAAACACTTCTACTTGAATGGATGG-TTTGTGTTACTGTTGTCAGATTGGGCATATGTACATTCAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     167751 107 +    290775 TGTGTGGGTGT--GGGGGAAGGGGTGCAA-TCCAATTCTGGCTCAAACACTTCTACTTGAATGGATGG-TTTGTGTTACTGTTGTCAGATTGGGCATATGTACATTCAAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2626102 107 -   3067355 TGTGTGGGTGT--GGGGGAAGGGGTGCAA-TCCAATTCTGGCTCAAACACTTCTACTTGAATGGATGG-TTTGTGTTACTGTTGTCAGATTGGGCATATGTACATTCAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30066443 106 + 171630274 TGCGTGGGTGC---AGGGAAGGGGTGCAA-TCCAATTCTGGCTCAAACACTTCTACTTGAATGGATGG-TTTGTGTTCCCGTTGTCAGATTGAGCATATGTACATTCAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           213441 106 -    242197 TGCGTGGGTGC---AGGGAAGGGGTGCAA-TCCAATTCTGGCTCAAACACCTCTACTTGAATGGATGG-TTTGTGTTCCCGTTGTCAGATCGAGCATATGTACATTCAAAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     207134 106 -   1771730 TGCGTGGGTGC---AGGGAAGGGGTGCAA-TCCAATTCTGGCTCAAACACTTCTACTTGAATGGATGG-TTTGTGTTCCTGTTGTCAGATCGAGCATATGTACATTCAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     281138 106 -    457564 TGCGTGGGTGC---AGGGAAGGGGTGCAA-TCCAATTCTAGCTCAAACACTTCTACTTGAATGGATGG-TTTGTGTTCCTGTTGTCAGATCAAGCATATGTACATTCAAAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                95460  94 + 123392446 TGTGTGG---------------GGCGCAA-TCCAATTCTGGCTCAAACACTGTGACTTGAATGGATGG-TATGTGTTCATGTCATCAGATCGAACATACGTGTGCTCAAAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     589644 103 +    730504 TGTATGG------GGGGGGGAAGGTGCAA-TCCAATTCTGGCTCAAACACTGCGACCTGAGTGGATGG-TATGTGTCCGTGCTGTCAGAATGAACATACATACACTCGAAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           101800 110 +  18854210 TGCATGGGTGCGGGGGTGGGGGGTTGCAA-TCCAATTCTGGCTCAAACACTTCAACTTGAATGGATGGTTATGTTCTCATGTCGTCAGATTGAACATATGTACATTCAAAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57924774 103 -  94987271 TGCGTGGGCGC--AGGGGGAGAGGC-----CTCAGTTCTGGCTCAGACACTGTGACTCGAGCGGATGG-TTTGTGTTCGTGTTGTGGGGTAGACCATATGTACAGACAAAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26221569 106 +  26524999 -GCGTGGGTGA--GGCATGCAGGGTGTGGCTTCTGATCCGGCAGCAGCACCTCTCATGGCACAGATGG-TTTGTGTTCATGTTGTCAGATTGAG-ACACAGGCATTCGAAA
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            29515 252 +    102524 I

a score=6614485.000000
s hg38.chr6_GL000254v2_alt   879024 457 +   4827813 TCTTTAACTATACCCATGTGTCTGCCTTAGATCGGAAGCTACTAGACT-AGAGTA-GGTATTAGCTGTGTCTGATGGTGTT-AGTGTGTACAGTTGCTAGCTCAGAACTGCA---AACAGAG--AATTTTGAC----AAACACTCTGGATAATTAGTGGCAAAGGATGGAAGGTAGAGC-AGAGTAAAGGAGGAGACATGGATATTCCAATGAAGAGCTGTGACACTGATGTTCTCTGATCCTTCTGACTTTCTTCATAGAGTTAACCCAGGATC-------TAACAGCTCCTACAATTCCAAAAGATTCTAGA-------AAAGGTGATAG--CAGTC--TTCT-CACTCTGCT--------------TGCCAGCCAGGA--GGA-------TATTTCTTCAGCATGCTAACTTCTTGCCATTCTTGTGTGCTTTTGGTTCACTGCCTCTTAGAAGGCTTTCA--GAAGAATGAAAACTACA-GAAATACCCTTCACA-TTTTTGAAGTCCATTA
s panTro5.chr6             29841690 457 + 175400573 TCTTTAACTATACCCATGTGTCTGCCTTAGATCGGAAGCTACTAGACT-AGAGTA-GGTATTAGCTGTGTCTGATGGTCTT-AGTGTGTACAGTTGCTAGCTCAGAACTGCA---AACAGAG--AATTTTGAC----AAACACTCTGGATAATTAGTGGCAAAGGATGGAAGGTAGAGC-AGAGTAAAGGAGGAGACATGGATATTCCAATGAAGAGCTGTGACACTGATGTTCTCTGATCCTTCTGACTTTCTTCATAGAGTTAACCCAGGATC-------TAACAGCTCCTACAATTCCAAAAGATTCTAGA-------AAAGGTGATAG--CAGTC--TTCT-CACTCTGCT--------------TGCCAGCCAGGA--GGA-------TATTTCTTCAGCGTGCTAACTTCTTGCCATTCTTGTGTGCTTTTGGTTCACTGCCTCTTAGAAGGCTTTCA--GAAGAATGAAAACTACA-GAAATACCCTTCACA-TTTTTGAAGTCCATTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30076520 457 + 173848474 TCTTTAACTATACCCATGTGTCTGCCTTAGATCGGAAGCTACTAGACT-AGAGTA-GGTATTAGCTGTGTCTGATGGTCTT-AGTGTGTACAGTTGCTAGCTCAGAACTGCA---AACAGAG--AATTTTGAC----AAACACTCTGGATAATTAGTGGCAAAGGATGGAAGGTAGAGC-AGAGTAAAGGAGGAGACATGGATATTCCAATGAAGAGCTGTGACACTGATGTTCTCTGATCCTTCTGACTTTCTTCATAGAGTTAACCCAGGATC-------TAACAGCTCCTACAATTCCAAAAGATTCTAGA-------AAAGGTGATAG--CAGTC--TTCT-CACTCTGCT--------------TGCCAGCCAGGA--GGA-------TATTTCTTCAGCGTGCTAACTTCTTGCCATTCTTGTGTGCTTTTGGTTCACTGCCTCTTAGAAGGCTTTCA--GAAGAATGAAAACTACA-GAAATACCCTTCACA-TTTTTGAAGTCCATTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5882801 457 +   6154872 TCTTTAACTACACCCATGTGTCTGCCTTAGATCGGAAGCTACTAGACT-AGAGTA-GGTATTAGCTGTGTCTGATGGTCTT-AGTGTGTACAGTTGCTAGCTCAGAACTGCA---AACAGAG--AAGTTTGAC----AAACACTCTGGATAATTAGTGGCAAAGGATGGAAGGTAGAGC-AGAGTAAAGGAGGAGACATGGATATTCCAATGAAGAGCTGTGACACTGACGTTCTCTGATCCTTCTGACTTTCTTCATAGAGTTAACCCAGGATC-------TAACAGCTCCTACAATTCCAAAAGATTCTAGA-------AAAGGTGATAG--CAGTC--TTCT-CACTCTGCT--------------TGCCAGCCAGGA--GGA-------TATTTCTTCAGCGTGCTAACTTCTTGCCATTCTTGTGTGCTTTTGGTTCACTGCCTCTTAGAAGGCTTTCA--GAAGAATGAAAACTACA-GAAATACCCTTCACA-TTTTTGAAGTCCATTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74591624 453 + 122973662 TCTTTAACTATACCCATGTGTCTGCCTTAGATCGGAAGCTACTAGACT-AGAGTA-GGTATTAGCTGTGTCCGATGGTCTT-AGTGTGTACAGTTGCTAGCTCAGAACTGCA---AACAGAG--AAGTTTGACAAATAAACACTCTGGATAATGAGTGGCAAAAGATGGAAGGTAGGGC-AGAGTAAAGGAGGAGACATGG--------ATGAAGAGCTGTGACATTGATGTTCTCTGATCCTTCTGACTTTCTTCATAGAGTTAACCCAGGATC-------TAACAGCTCCTACAATTCCAAAAGATTTTAGA-------AAAGGTGATAG--CAGTC--TTCT-CACTCTGCT--------------TGCCAGCCAGGA--GGA-------TTTTTCTTCAGCGTGCTAACTTCTTGCCACTCTTGTGTGCTTTCAGTTCACTGCCTCTTAGAGGGCTTTCA--GAAGACTGAAAACTACA-GAAATATCCTTCACG-TTTTTGAAGTCCATTA
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             30072882 464 + 172585720 TCTTTAACTATACCCATGTGTCTGCCTTAGATCGGAAGCTACTAGACT-AGAGCA-GGGATTAGCTGTGTCCGATGGTCTT-AGTGTGTATAGTTGCTAGCTCAGAACTGCA---AACAGAG--AAGTTTGACAAATAAACACTCTGGATAATGAGTGGCAAAGGATGGAAGGTAGAGCTAGAGTAAAGGGGGAGACATGGATATTCCAATGAAGAGTTGTGACATTGATGTTCTCTGATCCTTCTGACTTTCTTCATAGAGTTAACTGAGGATC-------TAACAGCTCCTACAGTTCTGAAAGATTCTAGA-------AAAGGTGATAGCACAGTC--TTCT-CACTCTGCT--------------TGCCAACCAGGA--GGA-------ATTTTCTTCAGCGTGCTAACTTCTTGCCATTCTTGTGTGCTTTCAGTTCACTTCCTCTTAGAGGGCTTTCG--GAAGACTGAAAACTACA-GAAATATCCTTCACA-TTTTTGAAGTCCATTA
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29735723 464 - 170955103 TCTTTAACTATACCCATGTGTCTGCCTTAGATCGGAAGCTACTAGACT-AGAGCA-GGGATTAGCTGTGTCCGATGGTCTT-AGTGTGTATAGTTGCTAGCTCAGAACTGCA---AACAGAG--AAGTTTGACAAATAAACACTCTGGATAATGAGTGGCAAAGGATGGAAGGTAGAGCTAGAGTAAAGGGGGAGACATGGATATTCCAATGAAGAGTTGTGACATTGATGTTCTCTGATCCTTCTGACTTTCTTCATAGAGTTAACCGAGGATC-------TAACAGCTCCTACAGTTCTGAAAGATTCTAGA-------AAAGGTGATAGCACAGTC--TTCT-CACTCTGCT--------------TGCCAACCAGGA--GGA-------ATTTTCTTCAGCGTGCTAACTTCTTGCCATTCTTGTGTGCTTTCAGTTCACTTCCTCTTAGAGGGCTTTCG--AAAGACTGAAAACTACA-GAAATATCCTTCACA-TTTTTGAAGTCCATTA
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2781137 464 -   2996164 TCTTTAACTATACCCATGTGTCTGCCTTAGATCGGAAGCTACTAGACT-AGAGCA-GGGATTAGCTGTGTCCGATGGTCTT-AGTGTGTATAGTTGCTAGCTCAGAACTGCA---AACAGAG--AAGTTTGACAAATAAACACTCTGGATAATGAGTGGCAAAGGATGGAAGGTAGAGCTAGAGTAAAGGGGGAGACATGGATATTCCAATGAAGAGTTGTGACATTGATGTTCTCTGATCCTTCTGACTTTCTTCATAGAGTTAACCGAGGATC-------TAACAGCTCCTACAGTTCTGAAAGATTCTAGA-------AAAGGTGATAGCACAGTC--TTCT-CACTCTGCT--------------TGCCAACCAGGA--GGA-------ATTTTCTTCAGCGTGCTAACTTCTTGCCATTCTTGTGTGCTTTCAGTTCACTTCCTCTTAGAGGGCTTTCG--AAAGACTGAAAACTACA-GAAATATCCTTCACA-TTTTTGAAGTCCATTA
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012002711v1     535466 464 +    766320 TCTTTAACTATACCCATGTGTCTGCCTTAGATCGGAAGCTACTAGACT-AGAGCA-GGGATTAGCTGTGTCCGATGGTCTT-AGTGTGTATAGCTGCTAACTCAGAACTGCA---AACAGAG--AAGTTTGACAAATAAACACTCTGGATAATGAGTGGCAAAGGATGGAAGGTAGAGCTAGAGTAAAGGGGGAGACATGGATATTCCAATGAAGAGTTGTGACATTGATGTTCTCTGATCCTTCTGACTTTCTTCATAGAGTTAACCCAGGATC-------TAACAGCTCCTACAATTCTGAAAGATTCTAGA-------AAAGGTGATAGCACAGTC--TTCT-CACTCTGCT--------------TGCCAACCAGGA--GGA-------ATTTTCTTCAGCGTGCTAACTTCTTGCCATTCTTGTGTGCTTTCAGTTCACTTCCTCTTAGAGGGCTTTCG--GAAGACTGAAAACTACA-GAAATATCCTTCACA-TTTTTGAAGTCCATTA
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17            28991625 464 -  71996105 TCTTTAACTATACCCATGTGTCTGCCTTAGATCGGAAGCTACTAGACT-AAAGCA-GGGATTAGCTGTGTCCAATGGTCTT-AGTGTGTATAGTTGCTAACTCAGAACTGCA---AACAGAG--AAGTTTGACAAATAAACACTCTGGATAATGAGTGGCAAAGGATGGAAGGTAGAGCTAGAGTACAGGGGGAGACATGGATATTCCAATGAAGAGTTGTGACATTGATGTTCTCTGATCCTTCTGACTTTCTTCATAGAGTTAACCCAGGATC-------TAACAGCTCCTACAATTCTGAAAGATTCTAGA-------AAAGGTGATAGCACAGTC--TTCT-CACTCTGCT--------------TGCCAACCAGGA--GGA-------ATTTTCTTCAGCGTGCTAACTTCTTGCCATTCTTGTGTGCTTTCAGTTCACTTCCTCTTAGAGGGCTTTTG--GAAGACTGAAAACTACA-GAAATATCCTTCACA-TTTTTGAAGTCCATTA
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012099233v1     167858 464 +    290775 TCTTTAACTATACCCATGTGTCTGCCTTAGATCGGAAGCTACTAGACT-AGAGCA-GGGATTAGCTGTGTCCGATGGTCTT-AGTGTGTATAGCTGCTAACTCAGAACTGCA---AACAGAG--AAGTTTGACAAATAAACACTCTGGATAATGAGTGGCAAAGGATGGAAGGTAGAGCTAGAGTAAAGGGGGAGACATGGATATTCCAATGAAGAGTCGTGACATTGATGTTCTCTGATCCTTCTGACTTTCTTCATAGAGTTAACCCAGGATC-------TAACAGCTCCTACAATTCTGAAAGATTCTAGA-------AAAGGTGATAGCACAGTC--TTCT-CACTCTGCT--------------TGCCAACCAGGA--GGA-------ATTTTCTTCAGCGTGCTAACTTCTTGCCATTCTTGTGTGCTTTCAGTTCACTTCCTCTTAGAGGGCTTTCG--GAAGACTGAAAACTACA-GAAATATCCTTCACA-TTTTTGAAGTCCATTA
i manLeu1.NW_012099233v1   C 0 I 1
s colAng1.NW_012115566v1    2626209 464 -   3067355 TCTTTAACTATACCCATGTGTCTGCCTTAGATCGGAAGCTACTAGACT-AGAGCA-GGGATTAGCTGTGTCCGGTGGTCTT-AGTGTGTATAGTTGCTAGCTCAGAACTGCA---AACAGAG--AAGTTTGACAAATAAACACTCTGGATAATGAGTGGCAAAGGATGGAAGGTAGAGCTAGAGTAAAGGGGGAGACATGGATATTCCAATGAAGAGTTGTGACATTGATGTTCTCTGATCCTTCTGACTTTCTTCATAGAGTTAACCCAGGATC-------TAACAGCTCCTACAATTCTGAAAGATTCTAGA-------AAAGGTGATAGCACAGTC--TTCT-CACTCTGCT--------------TGCCAACCAGGA--GGA-------ATTTTCTTCAGCGTGCTAACTTCTTGCCATTCTTGTGTGCTTTCAGTTCACTTCCTCTTAGAGGGCTTTCG--GAAGACTGAAAACTACA-GAAATATCCTTCACA-TTTTTGAAGTCCATTA
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chr4             30066549 462 + 171630274 CCTTTAACTATATCCATGTGTCTGTCTTAGATCAGAAGCTACT-GACT-AGAGCA-GGGATTAGCTGTGTCCGATGGTCTT-AGTGTGTGTAACTGCTAGCTCAGAACTATC---AACAGAC--AAGTTTGACAAATAAACACTTCGGATAATGAGTGGCAAAGGATGGAAGGTAGAGTTAGAGTAAAGGAGGAGATATGGATATTCCAATGAAGAACTGTGACAGTGATGTTCACTGATCCTTCTGACTTTCTTAACAGAGTTAACCCAGGATC-------TCACAGCTCCTACAATTCTGAAAGATCCTAGA-------AAAGATGACAGCACAGTC--TTCT-CACTCTGCC--------------TGCCAACCAGGA--GGA-------TTTCTCTTCAGTGTGCTAACTTCCTGCCATTCTTGTGTGCTTTCAGTTCACTGCCTCTTAGAGGGTTTTCA--GAAGACTGAAAACTACA-GAAATATCCTTCACA--TTTTTAAGTCCATTA
i calJac3.chr4             C 0 I 1
s saiBol1.JH378357           213547 463 -    242197 TCTTTAACTATATCCATGTGTCTGTCTTAGATCAGAAGCTACT-GACT-AGAGCA-GGGATTAGCTGTGTCCGATGGTCTT-AGCGTCTGTAACCGCTAGCTCAGAACTACA---AACAGAC--AAATTTGACAAATAAACACTTCGGATAATGAGTGGCAAAGGATGGAAGGTAGAGCTAGAGTAAAGGAGGAGATATGGATATTCCAATGAAGAGCTGTGACATTGATGTTTACTGATCCTTCTGACTTTCTTAACAGAGTTAACCCAGGATC-------TCACAGCTCCTACAATTCTGAAAGATCCTAGA-------AAAGATGACAGTACAGTC--TTCT-CACTCTGCC--------------TGCCAACCAGGA--GGA-------TTTCTCTTCAGTGTGCTAACTTCTTGCCATTCTTGTGTGCTTTCAGTTCACTGCCTCTTAGAGGGTTTTCA--GAAGACCGAAAACTACA-GAAATATCCTTCACA-TTTTTTAAGTCCATTA
i saiBol1.JH378357         C 0 I 1
s cebCap1.NW_016107755v1     207240 460 -   1771730 TCTTTAACTATATCCATGTGTCTGTCTTAGATCAGAAGCTACT-GGCT-AGAGCAGGGGATTAGCTGTGTCCGATGGTCTC-AGTGTGTGTAACTGCTAGCTCAGAACT-------ACAGAC--AAGTCTGACAAATAAACACTTTGGATAATGAGTGGCAAAGGATGGAAGGTAGAGCTAGCGTAAAGGAGGAGATGTGGATATTCCAATGAAGAGCTGTGACACTGATGTTCACTGATCCTTCTAACTGTCTTAACAGAGTTAACCTAGGATC-------TCACAGCTCCTACAATTCTGAAAGATCCTAGA-------AAAGATGACAGCACAGTC--TTCT-CACTCTGCC--------------TGCCAACCAGGA--GGA-------TTTCTCTTCAGTGTGTTAACTTCTTGCCATTCTTGTGTGCTTTCAGTTCACTGCCTCTTAGAGGGTTTTCA--GAAGACTGAAAACTACA-GAAATATCCTTCACA-TTTTTTAAGTCCATTA
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018509740v1     281244 463 -    457564 TCTTTAACTATATCCATGTGTCTGTCTTAGATCAGAAGCTACT-GACT-AGAGCA-GGGATTAGCTGTGTCCGATGGTCTC-AGTGTATGTAACTGCTAGCTCAGAACTACA---AACAGAC--AAGTTTGACAAATAAACACTTCGGATAATGAGTGGCAAAGGATGGAAGGTAGAGCTAGAGTAAAGGAGGAGATATGGATATTCCACTGAAGAGCTGTGACATTGATGTTCACTGATCCTTCTGACTTTCTTAACAGAGTTAACCCAGGATC-------TCACAGCTCCTACAATTCTGAAAGATCCTAGA-------AAAGATGACAGCACAGTC--TTCT-CACTCTGCC--------------TGCCAACCAGGA--GGA-------TTTCTCTTCAGTGTGCTAACTTCTTGCCATTCTTGTGTGCTTTCAGTTCACTGCCTCTTGGAGGGTTTTCA--GAAGACTGAAAACTACA-GAAATATCCTTCACA-TTTTTTAAGTCCATTA
i aotNan1.NW_018509740v1   C 0 I 2771
s micMur3.chr6                95554 462 + 123392446 TCTTTAACTATTCTCATGTGTCTGTC-CAGACCGGAAGCCACTAGACT-ATAGCA-GGGATTAGCTGGGTCCAATGGCCTC-AGTGTGCACAGCTGCGAGCTCAGAACCACA---CACAGAG--AAGTTAGACGAATACACACTCTGGATAATGAATGGCAAAGGACAGAAAGTGGAGACAGAGAAAAGGAAGAGACGCGGATATTCCAACAAAGAGTTGTGACGCCGATAT--TCTCATCCTTCAGACTTTCTCAATAGAGTTGGccagagatc-------taacagttcctgcaattctgaaagatcccaga-------aaaggtgacactaaagcc-tttct-cactctgct--------------tatcagacagga--aga-------ttttcctcaagtgtgctaacttcttgtcattctgctgtgctttcagctcaatgcctcttggagggttttca--gaagaccgagaactaca-gaaatattcttcata-attttgaagtccatta
i micMur3.chr6             C 0 I 1
s proCoq1.NW_012152574v1     589747 460 +    730504 TCTTTGCCTGTCCCCATGTGTCTGG---GGATTGGAAGCCACTGGACT-AGAGCA-GGGATTAGCTGGGTCCAATGGCCTC-AGTGTGCACAGCTGCAAGCTCAGAACCACA---AACAGGG--AAGTTCAACAAATACACACACTGGGTAATGAATGGCAAAGGACAGAACGTAGAGACAGAGTAAAGGAAGAGATGCGGATATTCCAACGAAGAGTTGTGACACCGATGT--TCTCATCCTTCAGACTTTCTCAATAGAGTTGGCCCAGGATC-------TAACAGTTCCTGCAGttctgaaagatcctaga-------aaaggtgacaccacggcc-cttct-cactctgct--------------tatcaaccagga--aga-------ttttccttaagtgtgctaatttcttgtcattctgctgtgctttcagtgcactgcctcttggagggttttca--gaagaccgagaactaca-gaaatattcttcgca-tttttgaagtctgtta
i proCoq1.NW_012152574v1   C 0 I 1
s otoGar3.GL873550           101910 452 +  18854210 TCTTTAACTATATCCATGTGTCTGCCTTAGATCAGAAGCTACTCGACG-ATAGCA-GGGCTTAGCTGGGTCCAATGGTCTT-AGTGAGTACAACTGCTAACTCAGA---------------G--AAGTTCGATGAATAAACACTCTAGATAATGAATGGCAAAGAACAGAAAGTAGAGACAGAGT-AAGGAAGAGACATGGATATTCCAGGGAAGAGTTGCAATGCTGATGTTCTCTCATCCTTCAGATTTCCTCAATAGAGTTGATCTAGGATC-------TAACAGCTCCTACAATTGTGAAAGATCCTAG--------AAATGTGATGGCACAGCCTTTTCT-TGTTCTGCT--------------TGTCAACTGGAA--AGG-------TTCTTCATAGGTGTGCTAATTTCCTGTCATTCTCTTGTGTTTTAAGTTCACTGCCTCTTGGACGGTTTTCA--GAAGACTGAGAACTACA-GAAATAGTCTTCATA-TTTTTGAAGTCCATTA
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57924877 446 -  94987271 TCGTTAGCTATACCCATGTGTCTATCTTGGGTTGGAAGCTACAAGACTAAAAGCG-GGGATTAGCTGAGTCCAATGGTCTTAAGAGTGTACAGCTGCTAGCTCAGAACTACAAACAACAGAG--AAATCTGATGAATAAACACTCTGGGAAATGAATGGCAAACGAGCGAA-GCAAAGACCCAGCCAAGGAAGAGA--TGGATATTGCAG-----------GCAGCTGGCATTCTCCCAACCCTCAGGCTCTTACAGCAGAGGTGACCCAGGAGC-------TAACAACTCCTCCAATTTTGAAAGATCC-AGA-------AAAGGCGACACCACAGCC--TTTTGCACTCTGCC--------------TGCGAACCAGGA--GGA-------TTGTTCTTTAGGGAGCTAACTTCTCGCTAGTCTGATATGACTTCTGTTGGCTGCCTC----------CTTG--GACTGGCGACAGCCACAGGAAGCAGTCTTCACA-TGGTACAGGTCCAGAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26221675 324 +  26524999 TCTGTAAATATGCCCATAT----------------------CTAGACT-GGAGCT-GGGCTGAGCAGGGTCCAGTGGT-TC-AGTGTGCA------------CAGAACCACA---ACT---C--AAGTCTACGGGACAGACGCT--GTATAACAAAGGGCCAA----AGAAAGTAGAGGTGGAGCCAAAGG-----------------------------------CGATGTTCTCC-AGGGTCCAGATATTCTCAGTGGGCTGGACCC-GAACCACTCCAATTACAGCTGCTCCAATTACAAGACAACCTAGA---------------------GGGC--ACCC-C----------------------------CCAAGA-----------------------------AACTTCCT--------------CATCCGG--CACAGCCCCCTGGAGGGATTT----GAAGGCTGAG-GCCCCA-GAGACACCCTTCCCAACATTTGACGTTCGGAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            29767 457 +    102524 TCCTGAACTACAGCTTTGCGTCTGTCTTAGTTCAGAAGACGCTAGACG-A---CT-------------GTCCAATAGTGTC-AGCGTGTACA-CAGCTAGCCAAGAATAACT---AGCAGAGACAAGCTGAGTCAATAATCACT--GGGTGAAGAGTGCCGAAGGGCGGCGAGTAGGAACAGAGCCAAGGAAGAGATGTCGCTCTTCCACTCGAGAGTTTCTCTGTTGATACGCTCTCATCCTTCAGGCTTCCTTAACTGAGTTGACCCAGAACC-------TGACAGTTCCTCTAATTCTAAAGGATTCCAGAAAAAATTAAAAATGATGCCACAGCC--TTTC-TCCCCTCCTAGTTCCACAGCCGCTGTCAAGCAGGATAGGATGCGCTTTCTTTCCTTTGTGTGCTAACCTCCTGACA-TCTGGGGT----------------------GGGGGCTCTTGGTGGAGACTGAAGATGACc-gaaataccctgcaca-tgtttgaggtccattt
i dasNov3.JH582591         I 252 C 0

a score=946454.000000
s hg38.chr6_GL000254v2_alt   879481 59 +   4827813 TCAATCCTA-CCCACACCCCTCCCAACACTCAACCTTCTTTTTCCATGAAAGCTAAAAAG
s panTro5.chr6             29842147 59 + 175400573 TCAATCCTA-CCCACACCCCTCCCAACACTCAACCTTCGTTTTCCATGAAAGCTAAAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30076977 59 + 173848474 TCAATCCTA-CCCACACCCCTCCCAACACTCAACCTTCGTTTTCCATGAAAGCTAAAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5883258 59 +   6154872 TCAATCCTA-CCCACACCCCTCCCAACACTCAACCTTCTTTTTCCATGAAAGCTAAAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74592078 59 + 122973662 TCAATCCTA-CCCACACCCCTCCCAACACTCAACCTTCTTTTTCCATGAAAGCTAAAAAG
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30073347 59 + 172585720 TCAATCCTA-CCCACACCCCTCCTAACACTCAACCTTCTTTTTCCAAGAAAGCTAAAAAG
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29736188 59 - 170955103 TCAATCCTA-CCCACACCCCTCCTAACACTCAACCTTCTTTTTCCAAGAAAGCTAAAAAG
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2781602 59 -   2996164 TCAATCCTA-CCCACACCCCTCCTAACACTCAACCTTCTTTTTCCAAGAAAGCTAAAAAG
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1     535931 59 +    766320 TCAATCCTA-CCCACACCCCTCCTAACACTCAACCTTCTTTTTCCAAGAAAGCTAAAAAG
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17            28992090 59 -  71996105 TCAATCCTA-CCCACACCCCTCTTAACACTCAACCTTCTTTTTCCAAGAAAGCTAAAAAG
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012099233v1     168323 59 +    290775 TCAATCCTA-CCCACACCCCTCCTAACACTCAACCTTCTTTTTCCAAGAAAGCTAAAAAG
i manLeu1.NW_012099233v1   I 1 C 0
s colAng1.NW_012115566v1    2626674 59 -   3067355 TCAATCCTA-CCCACACCCCTCCTAACACTCAACCTTCTTTTTCCAAGAAAGCTAAAAAG
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chr4             30067012 59 + 171630274 TCAATCCTA-CCCACACCCCTCCCAGCACTCAACCTTCTTTTTCCAAGGAAGCTAAAAAG
i calJac3.chr4             I 1 C 0
s saiBol1.JH378357           214011 59 -    242197 TCAATCCTA-CCCACACCCCTCCTAACACTCAACCTTCTTTTTCCAAGGAAGCTAAAAAG
i saiBol1.JH378357         I 1 C 0
s cebCap1.NW_016107755v1     207701 59 -   1771730 TCAATTCTA-CCCACACCCCTCCCAACACTCAACCTTCTTTTTCCAAGGAAGCTAAAAAG
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018509740v1     284478 59 -    457564 TCAATCCTA-CCCACACCCCTCCCAACACTCAACCTTCTTTTTCCAAGGAAGCCAAAAAG
i aotNan1.NW_018509740v1   I 2771 C 0
s micMur3.chr6                96017 60 + 123392446 tcactcctacctcacacccctcccaacactcaaccttctttttccaagaagatgaaaaag
i micMur3.chr6             I 1 C 0
s proCoq1.NW_012152574v1     590208 59 +    730504 tgaatccta-ctcacacccctcccaacactcaaccttctttttccaagcaagtgaaaaag
i proCoq1.NW_012152574v1   I 1 C 0
s otoGar3.GL873550           102363 59 +  18854210 TCAATCCTT-CTCACACCCCTCCCAACACTCAATCTTCTTTTTTCAAGAAAGTGAAAAAG
i otoGar3.GL873550         I 1 I 235
s mm10.chr17               57925323 57 -  94987271 TCAGTCCTA-TTCACACCCCTTTTTGCACTCAACCTT--TTTTCTAAGGAACCTAAAAAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26221999 55 +  26524999 --GCCGCTA-CTCAGACTCTCCCCTCCACCC--CCACCCCCATCTTTGAAAGCAAAAGAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            30224 37 +    102524 tcaacccca-cc----------------ctcaaccctcttttctcaagAAAGGC------
i dasNov3.JH582591         C 0 C 0

a score=3244698.000000
s hg38.chr6_GL000254v2_alt   879540 214 +   4827813 AATGATAGTTCCTTTAACTCTCTCAtgaactgggtcaagagacctgacttcatataccttgcagtaaccttgtttggctaaataact-----gtaagtaaattacttaacctcttggaactgcattctacatactggagaaaatcacatcattccttccttacctcacagAAACCATACAAGGAAAAGCTTAGCAACTACTTCTTGGGAAACCACAAGT
s panTro5.chr6             29842206 214 + 175400573 AATGATAGTTCCTTTAACTCTCTCAtgaactgggtcaagagacctgacttcatataccttgcagtaaccttgtttggctaaataact-----gtaagtaaattacttaacctcttggaactgcattctacatactggagaaaatcacatcattccttccttacctcacagAAACCATACAAGGAAAAGCTTAGCAACTACTTCTTGGGAAACCACAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30077036 214 + 173848474 AATGATAGTTCCTTTAACTCTCTCAtgaactgggtcaagagacctgacttcatataccttgcagtaaccttgtttggctaaataact-----gtaagtaaattacttaacctcttggaactgcattctacatactggagaaaatcacatcattccttccttacctcacagAAACCATACAAGGAAAAGCTTAGCAACTATTTCTTGGGAAACCACAAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5883317 214 +   6154872 AATGATAGTTCCTTTAACTCTCTCAtgaactgggtcaagagacctgacttcatataccttgcagtaaccttgtttggctaaataact-----gtaagtaaattacttaacctcttggaactgcattctacatactggagaaaatcacatcattccttccttacctcacagAAACCATACAAGGAAAAGCTTAGCAACTACTTCTTGGGAAACCACAAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74592137 214 + 122973662 AATGATAGTTCCTTTAACTCTCTCAtgaactgggtcaagagacctgacttcatataccttgcgataaccttgtttggctaaataact-----gtaggtaaattacttaacctcttgaaactgcattctacatactggagaaaatcacatcattccttccttacctcacagAAACCATACAAGGAAAAGCTTAGCAACTACTTCTTCGGAAACCACAAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30073406 214 + 172585720 AATTATAGTTCCTTTAACTCTCTCAtgaactgggtcaagagaccggacttcatataccttgcagtaaccttgtttggctaaataact-----gtaggtaaattatttaacctcttggaactacattctacatactggaaaaaatcacatcattccttccttacctcacagAAACCATACAAGGAAAAGCTTAGCAACTACTTCTTGGCAAACCACAAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29736247 210 - 170955103 AATTATAGTTCCTTTAACTCTCTCATGAACTGGGTCAAGAGACCAGACTTCATATACCTTGCAGTAACCTTGTTTGGCTAAATAACT-----GTAGGTAAATTATTTAACCTCTTGGAACTACATTCTACATACTGGAAAAAATCACATCATTCCTTCCTTAC----CAGAAACCATACAAGGAAAAGCTTAGCAACTACTTCTTGGCAAACCACAAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2781661 210 -   2996164 AATTATAGTTCCTTTAACTCTCTCAtgaactgggtcaagagaccagacttcatataccttgcagtaaccttgtttggctaaataact-----gtaggtaaattatttaacctcttggaactacattctacatactggaaaaaatcacatcattccttccttac----cAGAAACCATACAAGGAAAAGCTTAGCAACTACTTCTTGGCAAACCACAAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     535990 214 +    766320 AATTATAGTTCCTTTAACTCTCTCAtgaactgggtcaagagaccggacttcatataccttgcagtaaccttgtttggctaaataact-----gtaggtaaattatttaacgtcttggaactacattctacgtactggagaagatcacatcattccttccttacctcacagAAACCATACAAGGAAAAGCTTAGCAACTACTTCTTGGGAAACCACAAGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28992149 214 -  71996105 AATTATAGTTCCTTTAACTCTCTCATGAACTGGGTCAAGAGACCGGACTTCATATACCTTGCAGTAACCTTGTTTGGCTAAATAACT-----GTAGGTAAATTATTTAACCTCTTGGAACTACATTCTACATACTGGAGAAAATCACATCATTCCTTCCTTACCTTACAGAAACCATACAAGGAAAAGCTTAGCAACTACTTCTTGGGAAACCACAAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     168382 214 +    290775 AATTATAGTTCCTTTAACTCTCTCATGAACTGGGTCAAGAGACCGGACTTCATATACCTTGCAGTAACCTTGTTTGGCTAAATAACT-----GTAGGTAAATTATTTAACGTCTTGGAACTACATTCTACGTACTGGAGAAGATCACATCATTCCTTCCTTACCTCACAGAAACCATACAAGGAAAAGCTTAGCAACTACTTCTTGGGAAACCACAAGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2626733 213 -   3067355 AATTATAGTTCCTTTAACTCTCTCAtgaactgggtcaagagaccagacttcatataccttgcagtaa-cttgtttggctaaataact-----gtaggtaaattatttaacctcttggaactacattctacatactggagaaaatcacatcactccttccttacctcacagAAACCATACAAGGAAAAGTTTAGCAACTACTTCTTGGGAAACCACAAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30067071 214 + 171630274 AATGATAGTTCCTTTAACTCTCTCGtgaactgggtcaggagacctgacttcgtataccttgcagtaatcttgtttggctaaataact-----gtaggtaaattatttaacctcttggaatcgcattctacatactggagaaaatcaaaccattccttcctcacctcccagAAACCATACATGAAAAGGCTTAGCAACTACTTCTTGGGAAAGCACAAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           214070 214 -    242197 AATGATAGTTCCTTTAACTCTCTCAtgaactgggtcaggagacctgactttgtataccttgcagtaatcttgtttggctaaataact-----gtaggtaaattatttaatctcttggaattgcattctacatattggagaaaatcaaaccattccttccttacctcccagAAACCATACATAAAAAGGCTTAGCAACTACTTCTTGGAAAAGCACAAGT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     207760 214 -   1771730 AATGATAGTTCCTTTAACTCTCTCATGAACTGGTTCAGGAGACCTGACTTTGTATACCTTGCAATAATCTTGTTTGGCTAAATAACT-----GTAGGTAAATTATTTAACCTCTTGGAATTGCATTCTACATACTGAAGACAATCAAACCATTCCTTCCTTACCTCCCAGAAACCATACACAAAAAGGCTTAGCAGCTACTTCTTGGGAAAGCACAAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     284537 214 -    457564 AATGATAGTTCCTTTAACTCTCTCATGAACTGGGTCAGGAGAGCTGACTTTGTATACCTTGTGGTAATCTTGTTTGGCTAAATAACT-----GTAGGTAAATTATTTAACCTCTTGGAATTGCATTCTACATACTGGAGAAAATCAAACCATTCCTTCCTTACCTCCCAGACACCATACATGAAAAGGCTTAGCAACCACTTCTTGGGAAAGCACAAGT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                96077 214 + 123392446 aatgatggttcctttaactctcccttgaaatgggtcaaaagacctgattttgtgtacctggcagtaaacttctttggctaaagcatt-----gtagataaattacttaacctcttggaacttccctctacataatagagacagtcacatctttccttcctcacctcccagAAACCACACAAGGAAAGCCCCATCAACTACTTCTTGGCAAAGCACAAGT
i micMur3.chr6             C 0 I 979
s proCoq1.NW_012152574v1     590267 214 +    730504 aatgatggttcctttaactctcccATGAAATgggtcaaaagacctgactttgtatacctggcagtaaacttctttggctaaagcact-----gcaggtaaattacttaacctcttggaacttccttctacataatggagaaaatcacctctttccttcttcacctcccagAAACCACACAAGAAGAGACTCAGCAACTACTTCTTGGCAAAGCACAAGT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           102657 204 +  18854210 AAAGATGGTTCCTTTACCTCTTTCATGAAATGGGTCAAAAGACCTAACTTTATATACCTCACAGTAACTTTTGTTGGCCAATtaact-----gtaagtaaattacttaacctcttggaacttccttctacataatggagagaatcatatctttc--ttctcacctcccagAAATCATACAAGA-----CTCAGCAACTA---CCTGGCAAAGCACAAAT
i otoGar3.GL873550         I 235 C 0
s mm10.chr17               57925380 196 -  94987271 AACGGCAATCCCTTTAACTTTC-------ATGGATGAAGAGAACTGGC--CGTATAGCTTACAATAGCTCTGCTTGGCTTTCTTACTTATGGGTGAATGAATTCCTGAACCTCTCAGAATTGCCTTCCACATAACAGAGAACATCATACCTTCCCTTCCT-----------GACCAGATAGGAAAACATTT---AAATTTGTCTTGGCAGAGCACTTGT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26222054 201 +  26524999 AATGACAGCTCCTATAACTCTGTCATGAAATGGATCAAGAGACCTGAATTTCTATACCTGGCAATGACCTCATTTGGCTAAA-AACC-----ACAGGCAAATTGCTCGGGTTTTTGGAAATGCCTACCGTGTAATGGAGAAAATTACATCCGCCCCTTCTTACCCCCTAGAAGCCACACAAGGAAATGCTCAGTGGCCACTTGTTGG------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            30261 184 +    102524 ----------------ATTTTGTCATGAAATgagtcgagagacctgaatttctatacccggcagtaaccttgtcttgc-----aatc-----atagacgaatcgcttcatctctTGGAAAAGCCTTCCAGGAGGTGGGGACGATCA-ATCTGCCCTTCCTTACTTCCCAGGAACCATACAGG--AAGGCTCATGGTCCCCTC------AAGGCATAAGA
i dasNov3.JH582591         C 0 C 0

a score=588348.000000
s hg38.chr6_GL000254v2_alt   879754 44 +   4827813 AATACACAGGGG-ACCATACAAATAA---TTGTTTGGGTTTGGAATGT
s panTro5.chr6             29842420 44 + 175400573 AATACACAGGGG-ACCATACAAATAA---TTGTTTGGGTTTGGAATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30077250 44 + 173848474 AATACACAGGGG-ACCATACAAATAA---TTGTTTGGGTTTGGAATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5883531 44 +   6154872 AATACACAGGAG-ACCATACAAATAA---TTGTTTGGGTTTGGAATGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74592351 44 + 122973662 AATACACAGGGG-ACCATACAAATAA---TTGTTTGGGTTTGGAATGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30073620 44 + 172585720 AACACACAGGGG-ACCATACAAATAA---TTGTTTGGGTTTGGAATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29736457 44 - 170955103 AACACACAGGGG-ACCATACAAATAA---TTGTTTGGGTTTGGAATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2781871 44 -   2996164 AACACACAGGGG-ACCATACAAATAA---TTGTTTGGGTTTGGAATGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     536204 44 +    766320 AACACACAGGGG-ACCATACGAATAA---TTGTTTGGGTTTGGAATGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28992363 44 -  71996105 AACACACAGGGG-ACCATACAAATAA---TTGTTTGGGTTTGGAATGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     168596 44 +    290775 AACACACAGGGG-ACCATACAAATAA---TTGTTTGGGTTTGGAATGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2626946 44 -   3067355 AACACACAGGGG-ACCACACAAATAA---TTGTTTGGGTTTGGAATGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30067285 43 + 171630274 AATACACAGGAG-A-CATACAAATAA---TTGTTTGGGTTTGGAATAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           214284 43 -    242197 AATACACTGGAG-A-CATACAAATAA---TTGTTTGGGTTTGGAATGT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     207974 43 -   1771730 AATACACAGGAG-A-CATACAAACAA---TTGTTTGGGTTTGGAATGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     284751 43 -    457564 AATACACAGGAG-A-CATACAAATAA---TTGTTTGGGTTTGGAATGT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     590481 45 +    730504 GACACACAGGGCCACTGCACAGATAA---TGGTTTGGGTTTGGAATGT
i proCoq1.NW_012152574v1   C 0 I 707
s otoGar3.GL873550           102861 45 +  18854210 AATACACAGGGGCACTACACAAATAC---TGATTTCAGTTTGGGACAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57925576 45 -  94987271 ATGACACAGAGTCACTGCACAGATAA---TTGGTCGGGTTTAGAACGT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26222255 36 +  26524999 ------CAAGGC-TGCCCACAACT-----CTGTTTAGATCTGGAATGT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            30445 47 +    102524 AACACATAGGGG-CATCCACAAATTAGGCCTGCTTGGATTGGGAATGC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I

a score=560551.000000
s hg38.chr6_GL000254v2_alt   879798  54 +   4827813 TTTA--ACA----CAAACGG-Taat-----------------------------------------------------------gaa--agaataaatagatgaatgaagaataaataaata
s panTro5.chr6             29842464  54 + 175400573 TTTA--ACA----CAAACGG-Taat-----------------------------------------------------------gaa--agaataaatagatgaatgaagaataaataaata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30077294  54 + 173848474 TTTA--ACA----CAAACGG-Taat-----------------------------------------------------------gaa--agaataaatagatgaatgaagaataaataaata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5883575  54 +   6154872 TTTA--ACA----CACACGG-TAAT-----------------------------------------------------------GAA--AGAATAAACAGATGAATGAAGAATAAATAAATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74592395  54 + 122973662 TTTA--ACA----CACACTG-TAAT-----------------------------------------------------------GAA--AGAATAAATAGATGAATGAAGAATAAATAAATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30073664  54 + 172585720 ATTA--ACA----CATACAC-TAAT-----------------------------------------------------------GAA--AGAATAAATAGATGAATGAAGAACAAATAAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29736501  54 - 170955103 ATTA--ACA----CATACAC-Taat-----------------------------------------------------------gaa--agaataaatagatgaatgaagaacaaataaatA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2781915  54 -   2996164 ATTA--ACA----CATACAC-Taat-----------------------------------------------------------gaa--agaataaatagatgaatgaagaacaaataaatA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     536248  54 +    766320 ATTA--ACA----CATACAC-TAAT-----------------------------------------------------------GAA--AGAATAAATAGATGAATGAAGAACAAATAAATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28992407  54 -  71996105 ATTA--ACA----CATACAC-TAAT-----------------------------------------------------------TAA--AGAATAAATAGATGAATGAAGAACAAATAAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     168640  54 +    290775 ATTA--ACA----CATACAC-TAAT-----------------------------------------------------------GAA--AGAATAAATAGATGAATGAAGAACAAATAAATA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2626990  54 -   3067355 ATTA--ACA----CATACAC-Taat-----------------------------------------------------------gaa--agaataaatagatgaatgaagaataaataaata
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30067328  54 + 171630274 ATTA--ACA----CACATTC-TAAT-----------------------------------------------------------AAA--AGAATAAATAGAAGAATGAAAAATAAATAAGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           214327  54 -    242197 ATTA--AGA----CACACTC-TAAT-----------------------------------------------------------AAA--AGAATAAATAGAAGAATGAAGAATAAATAAGTA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     208017 113 -   1771730 ATTA--ACA----CACATTC-TAATAAAAGaataaatcttgcatgttcttcccatgtaccccaaaacctaaaatgcaataaaaaaaa--agaaTAAATAGAAGAATGAAGAATAAATAAGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     284794  54 -    457564 ATTA--ACA----CACATTC-Taat-----------------------------------------------------------aaa--agaataaatagaagaatgaagaataaataagta
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           102906  53 +  18854210 ATTAACACA----CATACTC-TTAT-----------------------------------------------------------GAA--AG---AAGTAGATGAATAAAGACTGAGTAATTA
i otoGar3.GL873550         C 0 I 981
s mm10.chr17               57925621  47 -  94987271 --TC--ACAG--GCACACTC-TAAC-----------------------------------------------------------AAAGCAGAGATGATACACGAATGAAGAAT---------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26222291  53 +  26524999 ACTA--ACAGCCTCACACTCTTAAG-----------------------------------------------------------GAA--AGAATGAGTAG----ATGAAGAATAAATAAA--
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            30492  50 +    102524 ------ACC----AAGACTC-TAAT-----------------------------------------------------------GAA--GGAATGAACAGATGAATGAGGGATAAATAAAAA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I

a score=138063.000000
s hg38.chr6_GL000254v2_alt   879852 11 +   4827813 aCTTTGTTCCT
s panTro5.chr6             29842518 11 + 175400573 aCGTTGTTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30077348 11 + 173848474 aCGTTGTTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5883629 11 +   6154872 ACTTTGTTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74592449 11 + 122973662 ACTTTGTTCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30073718 11 + 172585720 ACTTTGTTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29736555 11 - 170955103 ACTTTGTTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2781969 11 -   2996164 ACTTTGTTCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     536302 11 +    766320 ACTTTGTTCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28992461 11 -  71996105 ACTTTGTTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     168694 11 +    290775 ACTTTGTTCCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2627044 11 -   3067355 aCTTTGTTCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30067382 11 + 171630274 ACTTTGTTCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           214381 11 -    242197 ACTTTGTTTCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     208130 11 -   1771730 ACTTTGTTTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     284848 11 -    457564 aCTTTGTTCCT
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57925668 10 -  94987271 -CTTTGTTCCT
i mm10.chr17               C 0 I 237
s canFam3.chr35            26222344  8 +  26524999 ---ATGTTTCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            30542 11 +    102524 CCTGCATTCCC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e otoGar3.GL873550           102959 981 +  18854210 I

a score=111358.000000
s hg38.chr6_GL000254v2_alt   879863 11 +   4827813 CATGCCTTGCT
s panTro5.chr6             29842529 11 + 175400573 CATGCCTTGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30077359 11 + 173848474 CATGCCTTGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5883640 11 +   6154872 CATGCCTTGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74592460 11 + 122973662 CATGCCTTGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30073729 11 + 172585720 CATGACTTGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29736566 11 - 170955103 CATGACTTGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2781980 11 -   2996164 CATGACTTGCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     536313 11 +    766320 CATGCCTTGCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28992472 11 -  71996105 CATGCCTTGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     168705 11 +    290775 CATGCCTTGCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2627055 11 -   3067355 CATGCCTTGCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30067393 11 + 171630274 CAAGCCTTACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           214392 11 -    242197 CAAGCCTTACC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     208141 11 -   1771730 CAAGGCTTACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     284859 11 -    457564 CAAGCCTTACC
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26222352 11 +  26524999 CATGCCCAGCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            30553 11 +    102524 CATGCCCCGCC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57925678 237 -  94987271 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e otoGar3.GL873550           102959 981 +  18854210 I

a score=696410.000000
s hg38.chr6_GL000254v2_alt   879874 60 +   4827813 CACTTTTCTCTC----CAACTTTCTAGAGAGATAGAGGAGTGAGATACGCAAAGGGCACAGGCA
s panTro5.chr6             29842540 60 + 175400573 CACTTTTCTCTC----CAACTTTCTAGAGAGATAGAGAAGTGAGATACGCAAAGGGCACAGGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30077370 60 + 173848474 CACTTTTCTCTC----CAACTTTCTAGAGAGATAGAGAAGTGAGATACGCAAAGGGCACAGGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5883651 60 +   6154872 CACTTTTCTCTC----CAACTTTCTAGAGAGATAGAGAAGTGAGATACGCAAAGGGCACAGGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74592471 60 + 122973662 CACTTTTCTCTC----CAACTTTCTAGAGAGATAGAGAAGTGAGATATGCAAACGGCACAGGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30073740 59 + 172585720 CACTTTT-TCTC----CAACTTTCTAGAGAGATGGAGAAGTGAGATATGCAAAGGGCACAGGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29736577 59 - 170955103 CACTTTT-TCTC----CAACTTTCTAGAGAGATGGAGAAGTGAGATATGCAAAGGGCACAGGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2781991 59 -   2996164 CACTTTT-TCTC----CAACTTTCTAGAGAGATGGAGAAGTGAGATATGCAAAGGGCACAGGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     536324 59 +    766320 CACTTTT-TCTC----CAACTTTCTAGAGAGATGGAGAAGTGAGATATGCAAAGGGCACAGGCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28992483 59 -  71996105 CACTTTT-TCTC----CAACTTTCTAGAGAGATGGAGAAGTGAGATATGCAAAGGGCACAGGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     168716 59 +    290775 CACTTTT-TCTC----CAACTTTCTAGAGAGATGGAGAAGTGAGATATGCAAAGGGCACAGGCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2627066 59 -   3067355 CACTTTT-TCTC----CAACTTTCTAGAGAGATGGAGAAGTGAGATATGCAAAGGGCACAGGCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30067404 60 + 171630274 TACTTTTCTCTC----CAACCTTCTAGAGAGATGGAGAAGCGAGATATGCAAAAAGCACAGGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           214403 60 -    242197 CACTTTTCTCTC----CAGCTTTCGAGAGAGATGGAGAAGTGAGATATACAAAGAGCACTGGCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     208152 60 -   1771730 CACTTTTCTCTC----CAGCTTTCTAGAGAGGTGGAGAAGTGAGATACGCAAAGAGCACAGGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     284870 60 -    457564 TACTTTTCTCTC----CAACTTTCTAGAGAGATGGAGAAGTGAGATATGCAAAGAGCACAGGCA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           103940 64 +  18854210 CACTTTTCTCTCTATTCAAGCTTCTATAGAGATAGGGGAGTGGGATATATAAAGAGCATAGGTG
i otoGar3.GL873550         I 981 C 0
s canFam3.chr35            26222363 56 +  26524999 CACTTTTCTTTCTATTCAACTTTCT--GAAACCAGGGGAGGGGGAAGTGCAAGGAACA------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            30564 63 +    102524 CACTTTCCTTCC-AGTCAACTTTCTCAAGCCATGGTGGAGGGGGATGTACAGAGGAAGGAGACA
i dasNov3.JH582591         C 0 I 515
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57925678 237 -  94987271 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I

a score=215309.000000
s hg38.chr6_GL000254v2_alt   879934 31 +   4827813 AGGTACAGCAGTTGCTACTACACTGGGCTTT
s panTro5.chr6             29842600 31 + 175400573 AGGTACAGCAGTTGCTACTACACTGAGCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30077430 31 + 173848474 AGGTACAGCAGTTGCTACTACACTGAGCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5883711 22 +   6154872 AGGTACAGCAGTTGCTACTACA---------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74592531 31 + 122973662 ATGTACAGCAGTCGCTACTACATTGGGCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30073799 31 + 172585720 GTGTAGAGCAGTGGCTACTACATTGGGATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29736636 31 - 170955103 GTGTAGAGCAGTGGCTACTACATTGGGATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2782050 31 -   2996164 GTGTAGAGCAGTGGCTACTACATTGGGATTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     536383 31 +    766320 GTGTAGAGCAGTGGCTACTACATTGGGATTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28992542 31 -  71996105 GTGTAGAGCAGTGGTTACTACATTGGGATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     168775 31 +    290775 GTGTAGAGCAGTGGCTACTACATTGGGATTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2627125 31 -   3067355 GTGTAGAGCAGTGGCTACTACATTGGGATTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30067464 31 + 171630274 GTGTAGTGCAATGGCTACTACGCTGGGCTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           214463 31 -    242197 GTGTAGTGCAGTGGCTACTACGCTGGGCTTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     208212 31 -   1771730 GTGTAGTGTGGTGGCTACTACACTGGGCTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     284930 31 -    457564 GTGTAGTGCAGTGGCTGCTACACTGGGCTTT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           104004 14 +  18854210 ATATGGTATGGTAG-----------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26222419  9 +  26524999 --GTCCACCTG--------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57925678 237 -  94987271 I
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I

a score=673422.000000
s hg38.chr6_GL000254v2_alt   879965  78 +   4827813 GAAGGAGCCTGGGC----TTTGAAGATGC---------------------AA-----------------------TGGGCCTAGG--------------------------------------------TT---CTAC--CCTTGAGGACAAGACCAAATCCCATGCCCTCTCTT
s panTro5.chr6             29842631  78 + 175400573 GAAGGAGCCTGGGC----TTTGAAGATGC---------------------AA-----------------------TGGGCctagg--------------------------------------------tt---ctac--ccttgaggacaagaccaaatcccatgccctctctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30077461  78 + 173848474 GAAGGAGCCTGGGC----TTTGAAGATGC---------------------AA-----------------------TGGGCctagg--------------------------------------------tt---ctac--ccttgaggacaagaccaaatcccatgccctctctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5883733  70 +   6154872 --------CTGGGC----TTTGAAGATGC---------------------AA-----------------------TGGGCctagg--------------------------------------------tt---ctac--ccttgaggacaagaccaaatcccatgccctctctt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74592562  78 + 122973662 GAAGGAGCCTGGGC----TTTGAAGATGC---------------------AA-----------------------TGGGCCTGGG--------------------------------------------TT---CTAC--CCTTGAGGACAAGACCAAATCCCATGCCCTCTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30073830  98 + 172585720 GAAGCAGCCTGGGC----TTTGAAGATGCCTGGGTTCTACCCTTGGGTAGAA-----------------------GGGGCCTGGG--------------------------------------------TT---CTAC--CCTTGAGGACAAGATCAAATCCCAT-CCCTTTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29736667  98 - 170955103 GAAGCAGCCTGGGC----TTTGAAGATGCCTGGGTTCTACCCTTGGGTAGAA-----------------------GGGGCCTGGG--------------------------------------------TT---CTAC--CCTTGAGGACAAGATCAAATCCCAT-CCCTTTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2782081  98 -   2996164 GAAGCAGCCTGGGC----TTTGAAGATGCCTGGGTTCTACCCTTGGGTAGAA-----------------------GGGGCCTGGG--------------------------------------------TT---CTAC--CCTTGAGGACAAGATCAAATCCCAT-CCCTTTCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     536414  98 +    766320 GAAGCAGCCTGGGC----TTTGAAGATGCCTGGGTTCTACCCTTGGGTAGAA-----------------------TGGGCCTGGG--------------------------------------------TT---CTAC--CCTTGAGGACAAGATCAAATCCCAT-CCCTTTCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28992573  98 -  71996105 GAAGCAGCCTGGGC----TTTGAAGATGCCTGAGTTCTACCCTTGGGTAGAA-----------------------TGGGCCTGGG--------------------------------------------TT---CTAC--CCTTGAGGACAAGATCAAATCCCAT-CCCTTTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     168806  98 +    290775 GAAGCAGCCTGGGC----TTTGAAGATGCCTGGGTTCTACCCTTGGGTAGAA-----------------------TGGGCCTGGG--------------------------------------------TT---CTAC--CCTTGAGGACAAGATCAAATCCCAT-CCCTTTCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2627156  70 -   3067355 GAAGCAGCCTGGGC----TTTGAAGAT---------------------------------------------------GCCTGGG--------------------------------------------TT---CTAC--ccttgaggacaagatcaaatcccat-ccctttctt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30067495  78 + 171630274 CAAGCAGCCTGGGC----TTTGAAGATGC---------------------AA-----------------------TGGGCACGGG--------------------------------------------CT---CTAC--CCTTGAGGACAAGACCAAACCCCATGCCCTCTCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           214494 145 -    242197 GAAGCAGCCTGGGC----TTTAAAGATGC---------------------AATGAGGAAAGAACTGAAATGTGCGTGGGTGCAGGGAAGGGGTGCAATCCAATTCTGGCTCAAACACTTCTACTTCTACTT---CTAC--CCTTGAGGACAAGACCAAACCCCATGCCCTCTCtt
i saiBol1.JH378357         C 0 I 1440
s cebCap1.NW_016107755v1     208243  78 -   1771730 GAAGCAGCCTGGGC----TTTGAAGATGC---------------------AA-----------------------TGGACATGGG--------------------------------------------CT---CTAC--CCTTGAGGACAAGACCAAACCCCATGCCCTCTCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     284961  59 -    457564 GAAGCAGCCTGGGC----TTTGAAGATGC---------------------AA-----------------------TGGGCATGGG--------------------------------------------CT---CTAC--CCTTGA-------------------GCCCTCTCTT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           104018  78 +  18854210 -AAACAGCCTGGGC----TGTGAAGATAC----------------------A-----------------------CAGAGCTGGG--------------------------------------------CTCTACTAC--CCTTCAGGGCAAGAGTAAGTTCCAC-TGCTCCTTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57925915  76 -  94987271 GAAATAGCTTGGGC----CTTGAA-ACAC---------------------AA------------------------AGGTCTGGG--------------------------------------------CTCAACTAC--ACT--AGAACAGAAAGAAGCTCCAT-TCCTCTCTT
i mm10.chr17               I 237 C 0
s canFam3.chr35            26222428  65 +  26524999 ---GGACCCTGGGAATAGCTTGTGGACAC---------------------AG--------------------------GCCAGGG--------------------------------------------CT---CCACCACCTTGAGACCCGGAC-----------CTCTGTC--
i canFam3.chr35            C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I

a score=3284931.000000
s hg38.chr6_GL000254v2_alt   880043 332 +   4827813 AATCATCAGCATCTAGCACTGTGCCCAAC-CATAATGAAGTAACAAT-AAATGTCCATTGGAttaggccagtgaaaatactctgtaaagtatt-taatagt--agatacgtctcattatacatttgtccaaacccatagaatatataacaccaagggtgaactctaatgtaaactatggac-tttgggtgattatgatgtatcaatgt-aggttcatcagttgtaacaaatgtaccactctggcggaggatgtcgataatgtagaaggctatgcat-----gtgggaagcatatgggaagtttctgtaccttcatctcaattctgctgggaaactaaaactgct
s panTro5.chr6             29842709 332 + 175400573 aatcatcagcatctagcactgtgcccaac-cataatgaagtaacaat-aaatgtccattgGAttaggccagtgaaaatactctgtaaagtatt-taatagt--agatacgtgtcattatacatttgtccaaacccatagaatatataacaccaagggtgaactctaatgtaaactatggac-tttgggtgattatgatgtatcaatgt-aggtccatcagttgtaacaaatgtaccactctggcggaggatgtcgataacgtagaaggctatgcat-----gtgggaagcatatgggaagtttctgtaccttcatctcaattctgctgggaaactaaaactgct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30077539 332 + 173848474 aatcatcagcatctagcactgtgcccaac-cataatgaagtaacaat-aaatgtccattgGAttaggccagtgaaaatactctgtaaagtatt-taatagt--agatacgtgtcattatacatttgtccaaacccatagaatatataacaccaagggtgaactctaatgtaaactatggac-tttgggtgattatgatgtatcaatgt-aggtccatcagttgtaacaaatgtaccactctggcggaggatgtcgataacgtagaaggctatgcat-----gtgggaagcatatgggaagtttctgtaccttcatctcaattctgctgggaaactaaaactgct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5883803 332 +   6154872 aatcatcagcatctagcactgtgcccaac-cataatgaagtaacaat-aaatgtccattgGAttaggccagtgaaaatactctgtaaagtatt-taatagt--agatacgtgtcattatacatttgtccaaacccatagaatatataacaccaagggtgaactctaatgtaaactatggac-tttgggtgattatgatgtatcaatgt-aggttcatcagttgtaacaaatgtaccactctggcagaggatgtcgataatgtagaaggctatgcat-----gtgggaagcatatgggaagtttctgtaccttcatctcaattctgctgggaaactaaaactgct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74592640 334 + 122973662 AATCATCAGCATCTAGCACTGTGCCCAAC-CATAATGAAGTAACAAT-AAATGTCCATTGGAttgggccagtgaaaatactctgtaaagtatt-taatagt--agatacgtgtcattatacatttgtccaaacccatagaaaatataacaccaagggtgaactctaatgtaaactatggacttttgggtgattatgatgtatcaatgtaaggttcatcagttgtaacaaatgtaccactctggcggaggatgtcgataatgtagaaggctatgcat-----gtggggagtatatgggaagtttctgtaccttcatctcaatcctgctgggaaactaaaactgct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30073928 334 + 172585720 AATCATCAGCATCTAGCACTGTGCCCAAC-CATAATGAAGTAACAAT-AAATGTCCATTGGATAaggccagtgaaaatactctgtaaagtatt-taacggtacatatacacatcatcatacatttgtccaaacccacagaatatataacaccaagggtgaactctaacgtaaactatggac-tttgggtgattatgatgtatcaatgt-cgattcatcagttgtaacaaatgtaccactctagtggaggatgttgataatgtggaaggctgagtat-----gtgaggagtatatgggaagtctctgtaccttcatctcaattctgctgtgaaactaaaactgct
i rheMac8.chr4             C 0 I 3
s macFas5.chr4             29736765 334 - 170955103 AATCATCAGCATCTAGCACTGTGCCCAAC-CATAATGAAGTAACAAT-AAATGTCCATTGGATAaggccagtgaaaatactctgtaaagtatt-taacggtacatatacacatcactatacatttgtccaaacccacagaatatataacaccaagggtgaactctaacgtaaactatggac-tttgggtgattatgatgtatcaatgt-cgattcatcagttgtaacaaatgtaccactctagtggaggatgttgataatgtggaaggctgagtat-----gtgaggagtatatgggaagtctctgtaccttcatctcaattctgctgtgaaactaaaactgct
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1    2782179 334 -   2996164 AATCATCAGCATCTAGCACTGTGCCCAAC-CATAATGAAGTAACAAT-AAATGTCCATTGGATAaggccagtgaaaatactctgtaaagtatt-taacggtacatatacacatcattatacatttgtccaaacccacagaatatataacaccaagggtgaactctaacgtaaactatggac-tttgggtgattatgatgtatcaatgt-cgattcatcagttgtaacaaatgtaccactctagtggaggatgttgataatgtggaaggctgagtat-----gtgaggagtatatgggaagtctctgtaccttcatctcaattctgctgtgaaactaaaactgct
i macNem1.NW_012011356v1   C 0 I 3
s cerAty1.NW_012002711v1     536512 332 +    766320 AATCATCAGCATCTAGCACTGTGCCC--C-CATAATGAAGTAACAAT-AAATGTCCACTGGATAaggccagtgaaaatactatgtaaagtatt-taacagtacatatacacatcattatacatttgtccaaacccacagaatatataacaccaagggtgaactctaatgtaaactatggac-tttgggtgattatgatgtatcaatgt-cggttcatcagttgtaagaagtgtaccactctagtggaggatgttgataatgtgaaaggctaagtat-----gtgaggagtatatgggaagtctctgtaccttcatctcaattctgctgtgaaactaaaactgct
i cerAty1.NW_012002711v1   C 0 I 3
s chlSab2.chr17            28992671 334 -  71996105 AAACATCAGCATCTAGCACTGTGCCCAAT-CATAATGAAGTAACAAT-AAATGTCCATTGGATAaggccagtgaaaatactatgtaaagtatt-taacagtacatatacacatcattatacatttgtccaaacccacagaatatataacaccaagggtgaactctaatgtaaactatggac-tttgggtgattatgatgtatcaatgt-cggttcatcagttgtaacaagtgtaccactctagtggaggatgttgataatgtggaaggctaagtat-----gtgagtagtatatgggaagtctctgtaccttcatctcaattctgctgtgaaactaaaactgct
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012099233v1     168904 332 +    290775 AATCATCAGCATCTAGCACTGTGCCC--C-CATAATGAAGTAACAAT-AAATGTCCACTGGATAaggccagtgaaaatactatgtaaagtatt-taacagtacatatacacatcattatacatttgtccaaacccacagaatatataacaccaagggtgaactctaatgtaaactatggac-tttgggtgattatgatgtatcaatgt-cggttcatcagctgtaacaagtgtaccactctagtggaggatgttgataatgtggaaggctaagtat-----gtgaggagtatatgggaagtctctgtaccttcatctcaattctgctgtgaaactaaaactgct
i manLeu1.NW_012099233v1   C 0 I 3
s colAng1.NW_012115566v1    2627226 334 -   3067355 aatcatcagcatctagcactgtgcccaac-cgtaatgaagtcacaat-aaatgtccattgGATAaggccagtgaaaatactctgtaaagtatt-taacagtatatatacacatcattatacatttgtccaaagccacagaatatataacaccaagggtgaactctaatgtaaactatggac-tttgggtgattatgatgtatcaatgt-tggttcatcagttgtaacaaatgtacctctctagtggaggatgttgacaatgtggaaggctacgcat-----gtggggagtatatgggaagtctctgtaccttcacctcaattctgctgtgaaactaaaactgct
i colAng1.NW_012115566v1   C 0 I 1518
s calJac3.chr4             30067573 326 + 171630274 AATCATCAGCATCTAGCACTGTACCCAAC-CATAATGAAGGAACAATAAAATGTCCATTGGAttaggccagtgaaaatactct-----gtatt-taacaat--agatatgtgtcattatacatttgtccaaacccatagactatataacaccaagggtaaactctagtgtaaactatggac-tttgggtgattacgatgtgtcaatgt-aagttcatcagt--taacaaatgcaccactctggtggaggatgttgataatgtgaaaggctatgcat-----gtgggaagtatatgggaagtatctgtaccttcatctcaattctgttgtgaaattaaaactact
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     208321 330 -   1771730 AATCATCAGCATCTAGCACTGTGCTCAAC-CATAATGAAGGAACAAT-AAATGTCCATTGGAttaggccagtgaaaatactctgtaaagtatt-taacaat--agatatgtgtcattatacatttgtccaaacccatagaatatataacaccaagggtaaagtctaatgtaaactatggac-tttgagtgattatgatgtatcaatgt-aagttcatcagt--taacaaatgcaccactctgggggaggatgttgataatgtggaaggctatgcat-----gcggggagtatatgggaagtatctgtaccttcatctcaattcttctgtgaaattaaaactact
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     285020 330 -    457564 AATCATCAGCATCTAGCAGTGTGCCCACC-CATAATGAAGGAACAAT-AAATGTCCATTAGAttaggccagtgaaaatactctgtaaagtatt-taacaat--agatatgtgtcattatacattcgtccaaacccatagaatatataacacaaagggtaaactctaatgtaaactatggac-tttgggggattatgatgtatcaatgt-aagttcatcagt--taacaaatacaccactctggtggaggatgttgataatgtggaaggctatgcac-----atggggagtatatgagaagtatctgtaccttcatctcaattctgctgtgaaattaaaactact
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           104096 322 +  18854210 AATTGTTAGCATCTAGTACTATGCCCAGCTCACAAGGGACAAACAAT-ACATATCCATTAGAt-agggcaatgaaaatactctgta--------tgatggt--agatacatgtcagtatatctttgtccaaacctatagaatatacaatacaaagacagaaccctaatgtaaactataaac-tttcagtgattctgaggtatccagtt-aggctcatcaattgtaacaaatataccactcctgtgg-ggatgtggataagggggaaggctgttcat-----gtaag--gtatataggaaatctctgtacattcatctcaattttgctatgaacctaaaattgct
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57925991 306 -  94987271 GAGGACTGGTACCTATCGTTGAGCACAGCTCAAAGTGGACATACTAT-AAATGCCCCTGGAAATCTGTAATTCACatggcactgcaaag----------gt--agacacacgccac-------gtgt----acccctggaatgcaaaactctaacagctggtcctaatataagccacaagc-tttgagtgacaacagctggttgata--aagatcatcaacattcacaagtatactcctgtggcggtgtaacctgataatggagaagg-tgtgcat-----g-gggaag--tatgggaa--ctccgggccttcttttcaatttttctgtgaacctaaaacaata
i mm10.chr17               C 0 I 7
s canFam3.chr35            26222493 296 +  26524999 CATCCTCAACACCCAGTACAGTGCCCAGC-CCACATGGACCAAtgat-aaacgtccactggatc-----------aatattctatatgacaccatggtggt--agatacacgtcattctacctctat-caaaccctcagaatgtacagcaccaagagtaagcctgcgcataaagcaaggaa--ctgggtg---ctgatgggtcagtgc-acatgcatccagggtaag--------cggtctggtggggaaggttggcgatggcggaagctgtgcctctgcggtggggagcata-----------------ttcctctcaactttgctgtgaa-ttcaaatcgct
i canFam3.chr35            C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e saiBol1.JH378357           214639 1440 -    242197 I

a score=-96425.000000
s hg38.chr6_GL000254v2_alt   880375  2 +   4827813 -c-----------------------------------------------------------------------------------------a
s panTro5.chr6             29843041 91 + 175400573 -caaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30077871  2 + 173848474 -c-----------------------------------------------------------------------------------------a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5884135  2 +   6154872 -c-----------------------------------------------------------------------------------------a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74592974  2 + 122973662 -c-----------------------------------------------------------------------------------------a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30074265  2 + 172585720 -t-----------------------------------------------------------------------------------------a
i rheMac8.chr4             I 3 C 0
s macFas5.chr4             29737102  2 - 170955103 -t-----------------------------------------------------------------------------------------a
i macFas5.chr4             I 3 C 0
s macNem1.NW_012011356v1    2782516  1 -   2996164 -t------------------------------------------------------------------------------------------
i macNem1.NW_012011356v1   I 3 C 0
s cerAty1.NW_012002711v1     536847  2 +    766320 -t-----------------------------------------------------------------------------------------a
i cerAty1.NW_012002711v1   I 3 C 0
s chlSab2.chr17            28993008  1 -  71996105 -t------------------------------------------------------------------------------------------
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012099233v1     169239  2 +    290775 -t-----------------------------------------------------------------------------------------a
i manLeu1.NW_012099233v1   I 3 C 0
s calJac3.chr4             30067899  2 + 171630274 ------------------------------------------------------------------------------------------ca
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     208651  2 -   1771730 ------------------------------------------------------------------------------------------ca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     285350  2 -    457564 ------------------------------------------------------------------------------------------ca
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           104418  3 +  18854210 -----------------------------------------------------------------------------------------cta
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57926304  1 -  94987271 -c------------------------------------------------------------------------------------------
i mm10.chr17               I 7 C 0
s canFam3.chr35            26222789  2 +  26524999 ct------------------------------------------------------------------------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e saiBol1.JH378357           214639 1440 -    242197 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I

a score=39413.000000
s hg38.chr6_GL000254v2_alt   880377 5 +   4827813 aaaaa
s panTro5.chr6             29843132 5 + 175400573 aaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30077873 5 + 173848474 aaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5884137 5 +   6154872 aaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74592976 5 + 122973662 aaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30074267 5 + 172585720 aaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29737104 5 - 170955103 aaaaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     536849 5 +    766320 aaaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28993009 1 -  71996105 ----a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     169241 5 +    290775 aaaaa
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chr4             30067901 5 + 171630274 aaaaa
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     208653 5 -   1771730 aaaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     285352 5 -    457564 aaaaa
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           104421 5 +  18854210 aaaaa
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26222791 5 +  26524999 agaaa
i canFam3.chr35            C 0 I 202
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305 0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e saiBol1.JH378357           214639 1440 -    242197 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I
e macNem1.NW_012011356v1    2782517 0 -   2996164 C

a score=5473.000000
s hg38.chr6_GL000254v2_alt   880382 2 +   4827813 aa
s panTro5.chr6             29843137 2 + 175400573 aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30077878 2 + 173848474 aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5884142 2 +   6154872 aa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74592981 2 + 122973662 aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30074272 2 + 172585720 aa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29737109 2 - 170955103 aa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2782517 2 -   2996164 aa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     536854 2 +    766320 aa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28993010 2 -  71996105 aa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     169246 2 +    290775 aa
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chr4             30067906 2 + 171630274 aa
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     208658 2 -   1771730 aa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     285357 1 -    457564 a-
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           104426 1 +  18854210 a-
i otoGar3.GL873550         C 0 I 30
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305 0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e canFam3.chr35            26222796 202 +  26524999 I
e saiBol1.JH378357           214639 1440 -    242197 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I

a score=-2779.000000
s hg38.chr6_GL000254v2_alt   880384  6 +   4827813 aaaAAA-----
s panTro5.chr6             29843139  6 + 175400573 aaaaaa-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30077880  6 + 173848474 aaaAAA-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5884144  6 +   6154872 aaaAAA-----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74592983  6 + 122973662 aaaaaa-----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30074274  6 + 172585720 aaAAAA-----
i rheMac8.chr4             C 0 I 3
s macFas5.chr4             29737111  6 - 170955103 aaAAAA-----
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1    2782519  6 -   2996164 aaaaaa-----
i macNem1.NW_012011356v1   C 0 I 3
s cerAty1.NW_012002711v1     536856  6 +    766320 aaAAAA-----
i cerAty1.NW_012002711v1   C 0 I 1397
s chlSab2.chr17            28993012  2 -  71996105 aa---------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     169248  2 +    290775 aa---------
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chr4             30067908  3 + 171630274 aa--------a
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     208660 11 -   1771730 aaagAAAAAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     285358  1 -    457564 ----------a
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305  0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e canFam3.chr35            26222796 202 +  26524999 I
e saiBol1.JH378357           214639 1440 -    242197 I
e otoGar3.GL873550           104427 30 +  18854210 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I

a score=128651.000000
s hg38.chr6_GL000254v2_alt   880390 25 +   4827813 AAAAAAA----------ggccaggcacag-------tggctc
s panTro5.chr6             29843145 25 + 175400573 aaaaaaa----------ggccaggcaccg-------tggctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30077886 23 + 173848474 AAAAAAA------------ccaggcacag-------tggctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5884150 25 +   6154872 AAAAAAA----------ggccaggcacag-------tggctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74592989 35 + 122973662 aaaaaaaaaaaaacaaTggccaggcacag-------tggctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30074283 25 + 172585720 AAAAAAA----------Tgccaggcacag-------tggctc
i rheMac8.chr4             I 3 C 0
s macFas5.chr4             29737120 25 - 170955103 AAAAAAA----------Tgccaggcacag-------tggctc
i macFas5.chr4             I 3 C 0
s macNem1.NW_012011356v1    2782528 24 -   2996164 AAAAAAA----------TGCC-ggcacag-------tggctc
i macNem1.NW_012011356v1   I 3 I 4393
s chlSab2.chr17            28993014 25 -  71996105 aaaaata----------tgccaggcacag-------tggctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     169250 25 +    290775 AAAAAAA----------Tgccaggcacag-------tggctc
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chr4             30067911 25 + 171630274 AAAAAAA----------ggccatgcatag-------tgactc
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     208671 25 -   1771730 AAAAAAA----------ggccatgcgtag-------tgactc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     285359 32 -    457564 aaaAAAA----------GGCCATGCATAGTGACTCAtgactc
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305  0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e canFam3.chr35            26222796 202 +  26524999 I
e saiBol1.JH378357           214639 1440 -    242197 I
e otoGar3.GL873550           104427 30 +  18854210 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I

a score=702984.000000
s hg38.chr6_GL000254v2_alt   880415 131 +   4827813 acacctttaatcctagcactttgggaggccaaggtaagcagactgcctgagctcaggagttaa-----agaccagctgggcaacatggtgaaaccccatctctactaaaatacaaaaaattagctgggcatggtgg
s panTro5.chr6             29843170 131 + 175400573 acacctttaatcctagcactttgggaggccgaggtaggcagactgcctgagctcaggagttaa-----agaccagctgggcaacagggtgaaaccccatctctactaaaatacaaaaaattagctgggcatggtgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30077909 131 + 173848474 acacctttaatcctagcactttgggaggccgaggtaggcagactgcctgagctcaggagttaa-----agaccagctgggcaacagggtgaaaccccatctctactaaaatacaaaaaattagctgggcatggtgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5884175 131 +   6154872 acacctttaatcctagcactttgggaggccgaggtaggcagactgcctgagctcaggagttaa-----agaccagctgggcaacatggtgaaaccccatctctactaaaatacaaaaaattagctgggcatggtgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74593024 131 + 122973662 acacctttaatcctagcactttgggaggccaaggtaggcagactgcctgagctcgggagttaa-----agaccagctgggcaacatggtgaaaccccatctctattaaaatacaaaaaattagctgggcatggtgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30074308 131 + 172585720 atgcctgtaatcctagcactttgggaggctgaggtgggcagactgcctgagctcagcagttca-----agaccagctgggcaacatgatgaaaccccatctctaccaaaatacaaaaaattagctgggtatggtgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29737145 131 - 170955103 atgcctgtaatcctagcactttgggaggctgaggtgggcagactgcctgagctcagcagttca-----agaccagctgggcaacatgatgaaaccccatctctaccaaaatacaaaaaattagctgggtatggtgg
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            28993039 131 -  71996105 atgcctgtaatcctagcactttgggaggccgaggtgggcagactgcctgagctcagcagttca-----agaccagctgggcaacatggtgaaaccccatctctaccaaaatacaaaaaattagctgggtatggtgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     169275 131 +    290775 atgcctgtaatcctagcactttgggaggccgaggtgggcagactgcctgagctcagcagttca-----agaccagctgggcaacatggtgaaaccccatctctaccaaaatacaaaaaattagctgggtatggtgg
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chr4             30067936 128 + 171630274 atgtctgtaatcctagcactttaggaggctgaggtgaggagactgcctgagctcaggagttcg-----agaccagctgggcaagatggtgaaacaccatctc---taaaatacaaaatattagccaggcatagtgg
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     208696 136 -   1771730 atgtctgtaattctagcactttgggaggctgaggtgggcagactgcctgagctcaggagttcgagaccagaccagctgggcaagatggtgaaatcccatctctattaaaatacaaaatattggccgggcgcggtgg
i cebCap1.NW_016107755v1   C 0 I 1694
s aotNan1.NW_018509740v1     285391 131 -    457564 atgtctgtaatcttagcactttgggaggctgagatgggcagactgcctgagctcaggagttcg-----agaccagctgggcaagatggtgaaaccccatctctactaaaatacaaaatattagtcaggcatagtgg
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305   0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e canFam3.chr35            26222796 202 +  26524999 I
e saiBol1.JH378357           214639 1440 -    242197 I
e otoGar3.GL873550           104427  30 +  18854210 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e macNem1.NW_012011356v1    2782552 4393 -   2996164 I

a score=520893.000000
s hg38.chr6_GL000254v2_alt   880546 123 +   4827813 tgtgcacttgcagtcccaactactcaggaggctgagggctgaggtgagaaaatcacttcaacccaggaggtggaggttacagtgagctgagatgacgccactacactccagcctgggcgacag
s panTro5.chr6             29843301 123 + 175400573 tgtgcacttgcagtcccaactactcgggaggctgagggctgaggtgagaaaatcacttcaacccaggaggtggaggttacagtgagctgagatgacgccactacactccagcctgggcgacag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30078040 123 + 173848474 tgtgcacttgcagtcccaactactcgggaggctgagggctgaggtgagaaaatcacttcaacccaggaggtggaggttacagtgagctgagatgacgccactacactccagcctgggcgacag
i panPan2.chr6             C 0 I 863
s gorGor5.CYUI01015250v1    5884306 123 +   6154872 tgtgcacttgcagtcccaactactcgggaggctgagggctgaggtgagaaaatcacttcaacccaggaggtggaggttacagtgagctgagatgatgccactacactccagcctgggcgacag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74593155 123 + 122973662 cgtgcacttgcagtcccaactactcgggaggctgagggctgaggcgagagaatcacttcaacccaggaggtggaggttacagtgagctgagatgacgccactacactccagcctgggcgacag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30074439 123 + 172585720 tgtgcacttgtagtcccaactactcagtaggctgagggctgaggagagagaatcacttcaattcgggaggcggagtttacagtgggctgagatgatgccaccgcactccagcccgggcaacag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29737276 123 - 170955103 tgtgcacttgtagtcccaactactcagtaggctgagggctgaggagagagaatcacttcaattcgggaggcggaggttacagtgggctgagatgatgccactgcactccagcccgggcaacag
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            28993170 113 -  71996105 tgtgcacttgtagtcccaaaaa----------tgagggctgaggcgagagaatcacttcaatttgggaggtggaggttacagtgagctgagatgattccaccgcactccagcctgggcaacag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     169406 113 +    290775 tgtgcacttgtagtcccaaaaa----------tgagggctgaggcgagagaatcacttcaatttgggaggtggaggttacagtgagctgagatgattccaccgcactccagcccgggcaacag
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chr4             30068064 123 + 171630274 ggcgcgcttgcagtcccaactactcgagaggctgagggctgaggcaagagaatcgcttcaacccaggaggcgaaggttacagtgaactgagatggtgccactgcactccagcatggacaacag
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018509740v1     285522 123 -    457564 tgcgtgcttgcagtcccaactacttgggaggctgagggctgaggcaagagaatagcttcaacccaggaggcaaaggttacagtgagctgagatggtgccactgcactccagcatgggcaacag
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305   0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e canFam3.chr35            26222796 202 +  26524999 I
e saiBol1.JH378357           214639 1440 -    242197 I
e otoGar3.GL873550           104427  30 +  18854210 I
e cebCap1.NW_016107755v1     208832 1694 -   1771730 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e macNem1.NW_012011356v1    2782552 4393 -   2996164 I

a score=1036184.000000
s hg38.chr6_GL000254v2_alt   880669 312 +   4827813 agcaagactccgtctc---------aaaaaaaaaaaa----------------aaaaGGCATTATAAAAAACAAGTCAggctgggcac--------agtggctcacacttgtaatcccagctctttgggaggccaaggagggtggatcacctgaggtcaggaattccaga-cagcctggccaacctggtg-aaacccgtctctactaaaaatacaaaaattagctgggtgtgttggtgggctcccgtaatcccagctacttgggaagctgaggtagaagaatcgcttgaactcaagaggcagaggttgcagtgagcagagatcacgcc-actgcacttcagcctgggc
s panTro5.chr6             29843424 314 + 175400573 agcaagactccgtctc-------aaaaaaaaaaaaaa----------------aaaaggcattataaaaaacaagtcaggctgggcac--------ggtggctcacacttgtaatctcagctctttaggaggccaaggagggtggatcacctgaggtcaggaatttcaga-cagcctggccaacctggtg-aaacccgtctctactaaaaatacaaaaattagctgggtgtgttggtgggctcccgtaatccaagctacttgggaagctgaggtagaagaatcgcttgaactcaagaggcagaggttgcagtgagcggagatcacgcc-actgcacttcagcctgggc
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5884429 316 +   6154872 agcaagactccatctc-----aaaaaaaaaaaaaaaa----------------aaaaGGCTTTATAAAAAACAAGTCAggctgggcac--------ggtggctcacacttgtaatcccagctctttgggaggccaaggagggtggatcacctgaggtcaggaattccaca-cagcctggccaacctggtg-aaacccgtctctactaaaaatacaaaaattagctgggtgtgttggtgggctccggtaatcccagctacttgggaagctgaggtagaagaatcccttgaactcaagaggcagaggttgcagtgagcggagatcacgcc-actgcacttcagcctgggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74593278 322 + 122973662 agcaagactccgcctcaaaaaaaaaaaaaaaaaaaaa----------------aaaaGGCTTTATAAAAAACAAGTCAggctgggcac--------ggtggctcatgcttgtaatcccagctctttgggaggccaaggagggtggatcacctgaggtcaggaattccaga-cagcctggccaaactggtgtaaccccgcctctattaaaaatacaaaaattagctgggtgtgttggtgggctcccgtaatcccagctacttgggaagctgaggtaggagaattgcttgaactcaagaggcagaggttgcagtgagcggagatcacgcc-actgcacttcaacctgggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30074562 343 + 172585720 agcaaggctctgtctt---taaaaaaaaaaaaaaaaaaaTTTT-TTTTTTTTTAAAAGGCTTTATAAAAAACAAGTCAGGCTGGGCACAGTggctcggtggctcatgcttgtaatcccagcactttgggcagctaaggcaggtggatcacctgaggtcaggaattccaga-gagcctggccaacctggtgaaacctcatctctactaaaaatacaaaaattagctgggtgtgttggtgggctcccgtaatcccagctacttgggaggctgaggtaggagaatcgtttgaacccaaaaagcagaggttgcagtgagcggagatcatgccaattgcactccagcctgggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29737399 343 - 170955103 agcaaggctctgtctt---taaaaaaaaaaaaaaaaaaaaTTT-TTTCTTTTTAAAAGGCTTTATAAAAAACAAGTCAGGCTGGGCACAGTggctcggtggctcatgcttgtaatcccagcactttgggcagctaaggcaggtggatcacctgaggtcaggaattccaga-gagcctggccaacctggtgaaacctcatctctactaaaaatacaaaaattagctgggtgtgttggtgggctcccgtaatcccagctacttgggaggctgaggtaggagaatcgtttgaacccaaaaagcagaggttgcagtgagcggagatcatgccaattgcactccagcctgggc
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            28993283 340 -  71996105 agcaaggctctgtctt---taaaaaaaaaaaaaaaaa---TTT-TTTTTTTTAAAAAGGCTTTATAAAAAACAAGTCAGGCTTGGCACAGTGGCTGggtggctcatgcttgtaatcccagcactttgggcggctaaggcaggtgcatcacctcaggtcaggaattccaga-gagcctggccaacctggtgaaaccccgtctctactaaaaatacaaaaattagctgggtgtgttggtgggctcccgtaatcccagctacttgggaggctgaggtaggagaatcgtttgaactcaaaaagcagaggttgcagtgagtggagatcacgccaattgcactccagcctgggc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     169519 340 +    290775 agcaaggctctgtctt---taaaaaaaaaaaaaaaaa---TTTCTTTTTTTTAAAAAGGCTTTATAAAAAACAAGTCAGGCTGGGCACAGTggctcggtggctcatgcttgtaatcccagcactttgggcgg-taaggcaggtggatcacctgaggtcaggaattccaga-gagcctggccaacctggtgaaaccccgtctctactaaaaatacaaaaattagcagggtgtgttggtgggctcccgtaatcccagctacttgggaggctgaggtaggagaattgtttgaactcaaaaagcagaggttgcagtgagtggagatcacgccaattgcactccagcctgggc
i manLeu1.NW_012099233v1   C 0 I 485
s calJac3.chr4             30068187 318 + 171630274 agtgaga-tctgtctc----aaattaaaaaaaaaaaa----------------aaaaGGCTTTATAAAAAGCAAGTCAGGCCAGACAT---ggcacagtggttcatgtttgtaatcccaacactttggggggcagcagtgggtgaatcacctgaggccaggggttccagaccagcctggccaacctggtaaaaccccatctctactaaaaatacaaaaattagctgcgtgtggtggtgggctcccataatcccagttacttggaaagctgaggcaggaaaatc-----caatcaggagatgcatgttgcagtgagccgagatcacacc-actgcactccagcctgggc
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018509740v1     285645 319 -    457564 agcgaga-tccatctc----a----gaaaaaaaaaaa----------------aaaaGGCTTTATAAAAAGTAAGTCAGGCCAGACAC---ggcacagtggctcacgtttgtaatcccaacattttgggaggcagcagtgggcggatcaccagaggccaggggttccaaaccagcctggccaacctggtaaaaccccatctctactaaaaatacaaaaattagctgggtgtggtggtgggctcccataatcccagttactcgggaggctgaggcaggagaattgattgaactcaggagatggatgctgcagtgagccgagatcacacc-actgcattccagcctgggt
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305   0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e canFam3.chr35            26222796 202 +  26524999 I
e saiBol1.JH378357           214639 1440 -    242197 I
e otoGar3.GL873550           104427  30 +  18854210 I
e cebCap1.NW_016107755v1     208832 1694 -   1771730 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e macNem1.NW_012011356v1    2782552 4393 -   2996164 I
e panPan2.chr6             30078163 863 + 173848474 I

a score=37543.000000
s hg38.chr6_GL000254v2_alt   880981 14 +   4827813 gatggagtgagact
s panTro5.chr6             29843738 14 + 175400573 gatggagtgagact
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5884745 14 +   6154872 gatggagtgagact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74593600 14 + 122973662 aatggagtgagact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30074905 14 + 172585720 aacagagcgagact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29737742 14 - 170955103 aacagagcgagact
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            28993623 14 -  71996105 aacagagcgagact
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30068505 14 + 171630274 aatagagtaagact
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018509740v1     285964 14 -    457564 aatagagtgagact
i aotNan1.NW_018509740v1   C 0 I 494
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305  0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e canFam3.chr35            26222796 202 +  26524999 I
e saiBol1.JH378357           214639 1440 -    242197 I
e otoGar3.GL873550           104427 30 +  18854210 I
e cebCap1.NW_016107755v1     208832 1694 -   1771730 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I
e manLeu1.NW_012099233v1     169859 485 +    290775 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e macNem1.NW_012011356v1    2782552 4393 -   2996164 I
e panPan2.chr6             30078163 863 + 173848474 I

a score=9938.000000
s hg38.chr6_GL000254v2_alt   880995 19 +   4827813 ctgcctttaaaaaaa--------------aaaa
s panTro5.chr6             29843752 33 + 175400573 atgccttaaaaaaaaaaaaaaagaaaaagaaaa
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5884759 16 +   6154872 ctgccttaaaga-----------------aaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74593614 20 + 122973662 ctgccttaaaaaaaaa-------------aaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30074919 17 + 172585720 ccctctcaaaaaa----------------aaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29737756 17 - 170955103 ccatctcaaaaaa----------------aaaa
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            28993637 17 -  71996105 ctatctcaaaaaa----------------aaaa
i chlSab2.chr17            C 0 I 463
s calJac3.chr4             30068519 10 + 171630274 ctgtcttaaa-----------------------
i calJac3.chr4             C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305  0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e canFam3.chr35            26222796 202 +  26524999 I
e saiBol1.JH378357           214639 1440 -    242197 I
e otoGar3.GL873550           104427 30 +  18854210 I
e aotNan1.NW_018509740v1     285978 494 -    457564 I
e cebCap1.NW_016107755v1     208832 1694 -   1771730 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I
e manLeu1.NW_012099233v1     169859 485 +    290775 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e macNem1.NW_012011356v1    2782552 4393 -   2996164 I
e panPan2.chr6             30078163 863 + 173848474 I

a score=11466.000000
s hg38.chr6_GL000254v2_alt   881014 6 +   4827813 aaaaaa
s panTro5.chr6             29843785 6 + 175400573 aaaaaa
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5884775 6 +   6154872 aaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74593634 6 + 122973662 aaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30074936 6 + 172585720 aaaaaa
i rheMac8.chr4             C 0 I 454
s macFas5.chr4             29737773 6 - 170955103 aaaaaa
i macFas5.chr4             C 0 I 1
s calJac3.chr4             30068529 6 + 171630274 aaaaaa
i calJac3.chr4             C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305 0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e canFam3.chr35            26222796 202 +  26524999 I
e saiBol1.JH378357           214639 1440 -    242197 I
e otoGar3.GL873550           104427 30 +  18854210 I
e aotNan1.NW_018509740v1     285978 494 -    457564 I
e cebCap1.NW_016107755v1     208832 1694 -   1771730 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I
e manLeu1.NW_012099233v1     169859 485 +    290775 I
e chlSab2.chr17            28993654 463 -  71996105 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e macNem1.NW_012011356v1    2782552 4393 -   2996164 I
e panPan2.chr6             30078163 863 + 173848474 I

a score=5035.000000
s hg38.chr6_GL000254v2_alt   881020 5 +   4827813 aaGGC
s panTro5.chr6             29843791 5 + 175400573 aaGGC
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5884781 5 +   6154872 aaGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74593640 5 + 122973662 aaGGC
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29737780 5 - 170955103 TAGCC
i macFas5.chr4             I 1 I 2
s calJac3.chr4             30068535 5 + 171630274 aaggc
i calJac3.chr4             C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305 0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e canFam3.chr35            26222796 202 +  26524999 I
e saiBol1.JH378357           214639 1440 -    242197 I
e otoGar3.GL873550           104427 30 +  18854210 I
e aotNan1.NW_018509740v1     285978 494 -    457564 I
e cebCap1.NW_016107755v1     208832 1694 -   1771730 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I
e manLeu1.NW_012099233v1     169859 485 +    290775 I
e chlSab2.chr17            28993654 463 -  71996105 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e macNem1.NW_012011356v1    2782552 4393 -   2996164 I
e rheMac8.chr4             30074942 454 + 172585720 I
e panPan2.chr6             30078163 863 + 173848474 I

a score=310425.000000
s hg38.chr6_GL000254v2_alt   881025 475 +   4827813 Agccaggcacagggggctcacgcctgtaatcccaacattttcattttcagaggccaacgcaggaggattccttgagcccaggagtttgagacaagactgggcaaaacagagaggacccaactctacaaaatttttttaaaaattagccagacttggcctgggcacggaggctcacatctgtaatctcaggactttgggaggtcaaggcgggcagatcat---------gaggtcaggagtt---------caagacc---------------agcctggccaacatggtgaaaccctgtctctatgaaaaatacaaaaattagctgggcacggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtccggagttcgagaccagcctgagcaacatggagaaaccctgtctctac---------taaaaata-----caaaattagccgggtgtggtggcgcatgcctgtaatcccagctactccggaggctgaggc
s panTro5.chr6             29843796 475 + 175400573 Agccaggcacagggggctcacgcctgtaatcccaacattttcattttcagaggccaaggcaggaggattccttgagcccaggagtttgagacaagactgggcaaaacagagaggacccaactctacaaaatttttttttaaattagccagacttggcccgggcacggaggctcacatctgtaatctcaggactttgggaggtcaaggcgggcagatcat---------gaagtcaggagtt---------caagacc---------------agcctggccaacatggtgaaaccctgtctctacgaaaaatactaaaattagccgggcacggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtccggagttcgagaccagcctgagcaacatggagaaaccctgtctctac---------taaaaata-----caaaattagccgggcgtggtggcgcatgcctgtaatcccagctactccggaggctgaggc
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5884786 475 +   6154872 Agccaggcacagggggctcacgcctgtaatcccaacattttcattttcagaggccaaggcaggaggattccttgagcccaggagtttgagacaagactgggcaaaacagagaggacccaactctacaaaatttttttaaaaattagccagacttggcctgggcatggaggctcacatctgtaatctcaggactttgggaggtcaaggcgggcagatcat---------gaggtcaggagtt---------caagacc---------------agcctggccaacatggtgagaccctgtctctatgaaaaatacaaaaattagccgggcacggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggtgaatcacctgaggtccggagttcgagaccagcctgagcaacatggagaaaccctgtctctac---------taaaaata-----caaaagtagccaggcgtggtggcgcatgcctgtaatcccagctactccggaggctgaggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74593645 475 + 122973662 AgcctggcacagggggctcacacctgtaatcccaacattttcattttcagaggcgaaggcaggaggattccttgagcccaggagtttgaggtaagactgggcaaaacagagaggacccaactctacaaaaTTTTTTTAAAAATTAGCCAGACTTGGCccgggcacggaggctcacatctgtaatctcaggactttgggaggtcaaggcgggcagatcat---------gaggtcaggagtt---------caagacc---------------agcctggccaacatggtgaaaccctgtctctacgaaaaatacaaaaattagccaggcatggtggctcacgcctgtaatcccaccactttgggaggctgaggtgggtggatcacctgaggtccggagttccagaccagcctgaccaacatggagaaaccctgtctctac---------tgaaaata-----caaaattagccaggcgtggtggcgcatgcctgtaatcccagctactccagaggctgaggc
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30068540 497 + 171630274 ---tgtgtgca-gtgactcacacctgtaatcccag------cactttggaaggctgaggcaggcagatcac--gaggtgaagagatcaagaccatcctggccaacatggtgaaactctgtctctattaaa--aatataaaaattagcca-----------ggcatggtggcacttgcctatagtcccagctactcaggaggttgaggcaggagaatcatttgaacccgggaggcagaggttgcagtgagccaagatcatgccactgcactatagcctggcaacaagagcaaggctccctctcaaattaaaaaaaaaaaaTCAGCAAGTGCAggtgggtcatgcctgtaatccaaacactttcagaggccaaggcagaaggattgcttgagccccggagtttgagactagactcggcaatacagagaagacccaactctacaaaacttttttaaaaaattagccagacttggccaggcatggtggctcacgcctataatcccagtactttgggaagctgaggc
i calJac3.chr4             C 0 I 31
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305   0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e canFam3.chr35            26222796 202 +  26524999 I
e saiBol1.JH378357           214639 1440 -    242197 I
e otoGar3.GL873550           104427  30 +  18854210 I
e aotNan1.NW_018509740v1     285978 494 -    457564 I
e cebCap1.NW_016107755v1     208832 1694 -   1771730 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I
e manLeu1.NW_012099233v1     169859 485 +    290775 I
e chlSab2.chr17            28993654 463 -  71996105 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e macNem1.NW_012011356v1    2782552 4393 -   2996164 I
e macFas5.chr4             29737785   2 - 170955103 I
e rheMac8.chr4             30074942 454 + 172585720 I
e panPan2.chr6             30078163 863 + 173848474 I

a score=35907.000000
s hg38.chr6_GL000254v2_alt   881500 64 +   4827813 aggagaatggcttgaacctgggaggcggaggttgctgtgagccaagatcgcgccattgcactca
s panTro5.chr6             29844271 64 + 175400573 aggagaatggcttgaacctgggaggcggaggttgctgtgagccaagatcgcgccattgcactca
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5885261 64 +   6154872 aggagaatggcttgaacctgggaggcggaggttgctgtgagccaagatcgcgccattgcactca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74594120 64 + 122973662 aggagaatggcttgaacctgggaggcggaggttgctgtgagccaagattgagccattgcactca
i nomLeu3.chr1a            C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305  0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e canFam3.chr35            26222796 202 +  26524999 I
e saiBol1.JH378357           214639 1440 -    242197 I
e otoGar3.GL873550           104427 30 +  18854210 I
e aotNan1.NW_018509740v1     285978 494 -    457564 I
e cebCap1.NW_016107755v1     208832 1694 -   1771730 I
e calJac3.chr4             30069037 31 + 171630274 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I
e manLeu1.NW_012099233v1     169859 485 +    290775 I
e chlSab2.chr17            28993654 463 -  71996105 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e macNem1.NW_012011356v1    2782552 4393 -   2996164 I
e macFas5.chr4             29737785  2 - 170955103 I
e rheMac8.chr4             30074942 454 + 172585720 I
e panPan2.chr6             30078163 863 + 173848474 I

a score=15983.000000
s hg38.chr6_GL000254v2_alt   881564 24 +   4827813 agcctgggcaataagaatgaaact
s panTro5.chr6             29844335 24 + 175400573 agcctgggcaataagaatgaaact
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5885325 24 +   6154872 agcctgggaaataagaatgaaact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74594184 24 + 122973662 agcctgggcaacaagagtgaaact
i nomLeu3.chr1a            C 0 M 2100
s calJac3.chr4             30069068 22 + 171630274 agcctggcca--aatagtgaaacc
i calJac3.chr4             I 31 C 0
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305  0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e canFam3.chr35            26222796 202 +  26524999 I
e saiBol1.JH378357           214639 1440 -    242197 I
e otoGar3.GL873550           104427 30 +  18854210 I
e aotNan1.NW_018509740v1     285978 494 -    457564 I
e cebCap1.NW_016107755v1     208832 1694 -   1771730 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I
e manLeu1.NW_012099233v1     169859 485 +    290775 I
e chlSab2.chr17            28993654 463 -  71996105 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e macNem1.NW_012011356v1    2782552 4393 -   2996164 I
e macFas5.chr4             29737785  2 - 170955103 I
e rheMac8.chr4             30074942 454 + 172585720 I
e panPan2.chr6             30078163 863 + 173848474 I

a score=1009.000000
s hg38.chr6_GL000254v2_alt   881588 13 +   4827813 ctgtctc----aaaaaa
s panTro5.chr6             29844359 17 + 175400573 ccgtctcaaaaaaaaaa
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5885349 16 +   6154872 ccttctc-aaaaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chr4             30069090 13 + 171630274 ctgtctctactaa----
i calJac3.chr4             C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305  0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e canFam3.chr35            26222796 202 +  26524999 I
e saiBol1.JH378357           214639 1440 -    242197 I
e otoGar3.GL873550           104427 30 +  18854210 I
e aotNan1.NW_018509740v1     285978 494 -    457564 I
e cebCap1.NW_016107755v1     208832 1694 -   1771730 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I
e manLeu1.NW_012099233v1     169859 485 +    290775 I
e chlSab2.chr17            28993654 463 -  71996105 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e macNem1.NW_012011356v1    2782552 4393 -   2996164 I
e macFas5.chr4             29737785  2 - 170955103 I
e rheMac8.chr4             30074942 454 + 172585720 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M
e panPan2.chr6             30078163 863 + 173848474 I

a score=158369.000000
s hg38.chr6_GL000254v2_alt   881601 257 +   4827813 aaaaatacaaaaattagctgggtgtgatggtgggctcccgtaatcccagctactcaggaggctgaggcaggagaatcggagaatcgcttgaacccaggaggcggaggttgcagtgagccaagatcatgccattgcactccagcctgggcaacagagcaagactccatct------------------ca-gaaaaaaaaaaaattagccggacttggcttggagcagtggctcacgcctgtaatcccagcacttcagga---ggctgaggagggtgaat
s panTro5.chr6             29844376 250 + 175400573 aaaaatacaaaaattagctgggtgtgatggtgggctcccgtaatcccagctactcaggaggctgaggca--------ggagaatcgcttgaacccaggaggcggaggttgcagtgagccaagatcatgccattgcactccagcctgggcaacagagcaagactccatct------------------caggaaaaaaaaaaaattagccggacttggctcagatcagtggctcacgcctgtaatcccagcacttcggga---ggctgaggagggtgaat
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5885365 249 +   6154872 aaaaatacaaaaattagctgggtgtgatggtgggctcccataatcccagctactcaggagcctgaggca--------ggagaatcgcttgaacccgggaggcggaggttgcagtgagccaagatcatgccattgcactccagcctgggcaacagagcaagactccatct------------------ca-gaaaaaaaaaaaattagccagacttggctcggcgcagtggctcacgcctgtaatcccagcactttggga---ggctgaggaaggtgaat
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chr4             30069103 244 + 171630274 aaataca-aaaaattagccaggtgtggtgatgcacacctgtaatcccagctactggggagactgaggca--------ggagaatcacttgaacccaggaggcagaggttgcagtgagtggagatagtgtcattgcactccagcctgggcaacagagcaagactccatct---------------aaaga-gaaagaaaaaaaattagccagacttg----------gtggcatatgcctgtgattccagcctactcaggagtggctgagatgggtggat
i calJac3.chr4             C 0 I 85
s saiBol1.JH378357           216079 257 -    242197 aaaaacataaaaattagccaggcatggtggcacgggcctatagtcccagctactcaggaggctgaggca--------ggagaatcatttgaacctgggaggcagaggttgcagtgagccaagatcacgccactgcgctacagcctggcgacaagagcaagactccctctccaatttaaaaaaaaaaaaa-aaaaaaaaaaaaaTCAGcaggtgcag----------atgggtcatgcctgtaatccaaacactttcgga---ggccaaggcaggaggat
i saiBol1.JH378357         I 1440 I 2
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305   0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e canFam3.chr35            26222796 202 +  26524999 I
e otoGar3.GL873550           104427  30 +  18854210 I
e aotNan1.NW_018509740v1     285978 494 -    457564 I
e cebCap1.NW_016107755v1     208832 1694 -   1771730 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I
e manLeu1.NW_012099233v1     169859 485 +    290775 I
e chlSab2.chr17            28993654 463 -  71996105 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e macNem1.NW_012011356v1    2782552 4393 -   2996164 I
e macFas5.chr4             29737785   2 - 170955103 I
e rheMac8.chr4             30074942 454 + 172585720 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M
e panPan2.chr6             30078163 863 + 173848474 I

a score=3336.000000
s hg38.chr6_GL000254v2_alt   881858 11 +   4827813 catgaggttag
s panTro5.chr6             29844626 11 + 175400573 catgaggttag
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5885614 11 +   6154872 catgaggttag
i gorGor5.CYUI01015250v1   C 0 C 0
s saiBol1.JH378357           216338 11 -    242197 cttgagcaccg
i saiBol1.JH378357         I 2 C 0
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305  0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e canFam3.chr35            26222796 202 +  26524999 I
e otoGar3.GL873550           104427 30 +  18854210 I
e aotNan1.NW_018509740v1     285978 494 -    457564 I
e cebCap1.NW_016107755v1     208832 1694 -   1771730 I
e calJac3.chr4             30069347 85 + 171630274 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I
e manLeu1.NW_012099233v1     169859 485 +    290775 I
e chlSab2.chr17            28993654 463 -  71996105 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e macNem1.NW_012011356v1    2782552 4393 -   2996164 I
e macFas5.chr4             29737785  2 - 170955103 I
e rheMac8.chr4             30074942 454 + 172585720 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M
e panPan2.chr6             30078163 863 + 173848474 I

a score=30207.000000
s hg38.chr6_GL000254v2_alt   881869 58 +   4827813 gtgttcgagaccaacctgaccaacatggtgaaaccccatgtccactaaaaatac----aaaa--------
s panTro5.chr6             29844637 58 + 175400573 gtgttcaagaccaacctgaccaacatggtgaaaccccatgtccactaaaaatac----aaaa--------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079026 56 + 173848474 GTgttcaagaccaacctgaccaacatggtgaaaccccatgtccact-aaaatac-----aaa--------
i panPan2.chr6             I 863 C 0
s gorGor5.CYUI01015250v1    5885625 58 +   6154872 gtgttcgagaccaacctgaccaacatggtgaaaccccatgtccactaaaaatac----aaaa--------
i gorGor5.CYUI01015250v1   C 0 C 0
s saiBol1.JH378357           216349 70 -    242197 gaatttgagactagactcagcaatacagagaggacccaactctacaaaacgttttttaaaaattagccag
i saiBol1.JH378357         C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305  0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e canFam3.chr35            26222796 202 +  26524999 I
e otoGar3.GL873550           104427 30 +  18854210 I
e aotNan1.NW_018509740v1     285978 494 -    457564 I
e cebCap1.NW_016107755v1     208832 1694 -   1771730 I
e calJac3.chr4             30069347 85 + 171630274 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I
e manLeu1.NW_012099233v1     169859 485 +    290775 I
e chlSab2.chr17            28993654 463 -  71996105 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e macNem1.NW_012011356v1    2782552 4393 -   2996164 I
e macFas5.chr4             29737785  2 - 170955103 I
e rheMac8.chr4             30074942 454 + 172585720 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=372320.000000
s hg38.chr6_GL000254v2_alt   881927 449 +   4827813 acttatctgggcatggtggcacgcacccgtaatcccagctattcagaaggctgaggcaggagaatcactggaacccaggaggcagaggttgcagtgagccgagatcacaccattgtgctccagcctaggcaacagagcaagactctatctcgag------aaaaaaaaaaaaagttagccagacttggtggcatatgtctgtgatcccagcttacttgggaggggctgaggtgggtggatgacttgagcccaggaggtcaaggctgcagc-------gattgtaccactgcactcctgcctgggcagcagagggatactctacctc-----------aaaaaaaaaaaaaaaaaaaggctgggcgcggtggctcacgcctgtaatcccagcatttt---gggaggccgaggcgggcggat--cacgaggtcaggagatcgagaccat------------------------cctggctaacacggtgaaaccccgtctctac
s panTro5.chr6             29844695 461 + 175400573 acttatctgggcatggtggcacgcacctgtaatcccagctattcagaaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagccgagatcacaccattgtgatccagcctaggcaacagagcaagactctatctcgag-----aaaaaaaaaaaaaaattagccagactaggtggcatatgtctgtgatcccagcttacttgggaggggctgaggtgggtggatggcttgagcccaggaggtcaaggctgcagc-------gattgcaccactgcactcctgcctgggcaacagagggatactctacctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggctgggcacggtggctcacgcctgtaatcccagcatttt---gggaggccgaggcgggcggat--cacgaggtcaggagatcgagatcat------------------------cctggctaacacggtgaaaccccatctctac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079082 444 + 173848474 acttatctgggcatggtggcacgcacctgtaatcccagctattcagaaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagccgagatcacaccattgtgatccagcctaggcaacagagcaagactctatctcgaa------gaaaaaaaaataaTTTAgccagactaggtggcatatgtctgtgatcccagcttacttgggaggggctgaggtgggtggatggcttgagcccaggaggtcaaggctgcagc-------gattgcaccactgcactcctgcctgggcaacagagggatactctacctc----------------aaaaaaaaaaaaaaggctgggcacggtggctcacgcctgtaatcccagcatttt---gggaggccgaggcgggcggat--cacgaggtcaggagatcgagatcat------------------------cctggctaacacggtgaaaccccgtctctac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5885683 460 +   6154872 acttatctgggcatggtggcacgcacctgtaatcccaactattcagaaggctgaggcaggagaatcacttcaacccaggaggcagaggttgcagtgagccgagatcacaccattgtgctccagcctagtaaacagagaaagactctatctcgagaaaaaaaaaaaaaaaaaaaattagccagacttggtggcatatgtctgtgatcccagcttacttgggaggggctgaggtgggtggatggcttgagcccaggaggtcaaggctgcagt-------gattgcaccactgcactcctgcctgggcaacagagggatactctacctc------aaaaaaaaaaaaaaaaaaaaAAAAggctgggcacggtggctcacgcctgtaatcccaggatttt---gggaggccgaggcgggcggat--cacgaggtcaggagatcgagaccat------------------------cctggctaacacggtgaaaccccgtctctac
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29737787 453 - 170955103 ACTTggctaggtgcagtggctcatgcctgtaatcccagcacttcaggaggccgagg--agagaatcac----------------gaggtt--aggtgttcaaga---------------ccaacctgaccaacatggtgaaaccccatctttac--caaaaatacaaaaaaaaattagctgggcatggtggtatgcgcctataatcgcagc-tattcagaa--ggctgaggcaggggaatcgcttgaacccaggaggcagaggttgcagtgagctgagattgcaccactgcactccagcctaggcaacagagcaagactccatctc------aagaaaaaaaaaaaaaaaaaaattagccagacttggtggcatataccagtgatcccagcttacttaggaggggctgaggtggatggatggcttgagcccaggaggtcaagactgcagtgattgcaccactgcactcctgcctgggcaacagagggatactctatctc---
i macFas5.chr4             I 2 C 0
s saiBol1.JH378357           216419 443 -    242197 acttggccaggcatggtggctcacgcctgtaatcccagcactttgggaagctgaggtatgcagaccac----------------gaggcc--aggagttcgaga---------------tcagcctggccaa-atggtgaaaccctgtctctac-----taaaaatacaaaaaattagccaggtgtggtgatgcacacctgtaatcccagc-tactgggaa--gactgaggcaggagaataacttgaacccaggaggcagaggttgcagtgagcagagatagcatcattgcactccagcctgggcaacagagccagactccatcta--------aagagaaaaaaaaaaaaaaattagccagacttagtggcatatacctgtgattccagcctactcaggaggggctgagatgggtggat------ggcccagaagatcaaggctgcagtgattgcaccactgcactcctgcctgggcaacaaagggatactttgtctt---
i saiBol1.JH378357         C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305   0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e canFam3.chr35            26222796 202 +  26524999 I
e otoGar3.GL873550           104427  30 +  18854210 I
e aotNan1.NW_018509740v1     285978 494 -    457564 I
e cebCap1.NW_016107755v1     208832 1694 -   1771730 I
e calJac3.chr4             30069347  85 + 171630274 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I
e manLeu1.NW_012099233v1     169859 485 +    290775 I
e chlSab2.chr17            28993654 463 -  71996105 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e macNem1.NW_012011356v1    2782552 4393 -   2996164 I
e rheMac8.chr4             30074942 454 + 172585720 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=-3064.000000
s hg38.chr6_GL000254v2_alt   882376 5 +   4827813 taaaa-
s panTro5.chr6             29845156 1 + 175400573 t-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079526 1 + 173848474 t-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886143 1 +   6154872 t-----
i gorGor5.CYUI01015250v1   C 0 C 0
s canFam3.chr35            26222998 5 +  26524999 -taaaa
i canFam3.chr35            I 202 C 0
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305 0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e saiBol1.JH378357           216862 0 -    242197 C
e otoGar3.GL873550           104427 30 +  18854210 I
e aotNan1.NW_018509740v1     285978 494 -    457564 I
e cebCap1.NW_016107755v1     208832 1694 -   1771730 I
e calJac3.chr4             30069347 85 + 171630274 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I
e manLeu1.NW_012099233v1     169859 485 +    290775 I
e chlSab2.chr17            28993654 463 -  71996105 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e macNem1.NW_012011356v1    2782552 4393 -   2996164 I
e macFas5.chr4             29738240 0 - 170955103 C
e rheMac8.chr4             30074942 454 + 172585720 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=273.000000
s hg38.chr6_GL000254v2_alt   882381 1 +   4827813 a
s chlSab2.chr17            28994117 1 -  71996105 a
i chlSab2.chr17            I 463 C 0
s canFam3.chr35            26223003 1 +  26524999 a
i canFam3.chr35            C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305 0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e saiBol1.JH378357           216862 0 -    242197 C
e otoGar3.GL873550           104427 30 +  18854210 I
e aotNan1.NW_018509740v1     285978 494 -    457564 I
e cebCap1.NW_016107755v1     208832 1694 -   1771730 I
e calJac3.chr4             30069347 85 + 171630274 I
e colAng1.NW_012115566v1    2627560 1518 -   3067355 I
e manLeu1.NW_012099233v1     169859 485 +    290775 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e macNem1.NW_012011356v1    2782552 4393 -   2996164 I
e macFas5.chr4             29738240 0 - 170955103 C
e rheMac8.chr4             30074942 454 + 172585720 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M
e gorGor5.CYUI01015250v1    5886144 0 +   6154872 C
e panPan2.chr6             30079527 0 + 173848474 C
e panTro5.chr6             29845157 0 + 175400573 C

a score=12573.000000
s hg38.chr6_GL000254v2_alt   882382 6 +   4827813 aaaaaa-
s panTro5.chr6             29845157 6 + 175400573 aaaaaa-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079527 2 + 173848474 ----aa-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886144 3 +   6154872 ---aaa-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075396 6 + 172585720 aaaaaa-
i rheMac8.chr4             I 454 C 0
s macFas5.chr4             29738240 6 - 170955103 aaaaaa-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2786945 6 -   2996164 aaaaaa-
i macNem1.NW_012011356v1   I 4393 C 0
s chlSab2.chr17            28994118 6 -  71996105 aaaaaa-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170344 6 +    290775 aaaaaa-
i manLeu1.NW_012099233v1   I 485 C 0
s colAng1.NW_012115566v1    2629078 6 -   3067355 aaaaaa-
i colAng1.NW_012115566v1   I 1518 C 0
s saiBol1.JH378357           216862 3 -    242197 ---ggg-
i saiBol1.JH378357         C 0 C 0
s canFam3.chr35            26223004 6 +  26524999 -aaaaat
i canFam3.chr35            C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e mm10.chr17               57926305 0 -  94987271 C
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e otoGar3.GL873550           104427 30 +  18854210 I
e aotNan1.NW_018509740v1     285978 494 -    457564 I
e cebCap1.NW_016107755v1     208832 1694 -   1771730 I
e calJac3.chr4             30069347 85 + 171630274 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=11268.000000
s hg38.chr6_GL000254v2_alt   882388 2 +   4827813 aa
s panTro5.chr6             29845163 2 + 175400573 aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079529 2 + 173848474 aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886147 2 +   6154872 aa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075402 2 + 172585720 aa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738246 2 - 170955103 aa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2786951 2 -   2996164 aa
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994124 2 -  71996105 aa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170350 2 +    290775 aa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629084 2 -   3067355 aa
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           216865 2 -    242197 gg
i saiBol1.JH378357         C 0 C 0
s mm10.chr17               57926305 2 -  94987271 aa
i mm10.chr17               C 0 I 1
s canFam3.chr35            26223010 2 +  26524999 aa
i canFam3.chr35            C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e dasNov3.JH582591            30627 515 +    102524 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e otoGar3.GL873550           104427 30 +  18854210 I
e aotNan1.NW_018509740v1     285978 494 -    457564 I
e cebCap1.NW_016107755v1     208832 1694 -   1771730 I
e calJac3.chr4             30069347 85 + 171630274 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=-168.000000
s hg38.chr6_GL000254v2_alt   882390 2 +   4827813 aA
s panTro5.chr6             29845165 2 + 175400573 aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079531 2 + 173848474 aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886149 2 +   6154872 aa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075404 2 + 172585720 ta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738248 2 - 170955103 ta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2786953 2 -   2996164 ta
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994126 2 -  71996105 ta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170352 2 +    290775 ta
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629086 2 -   3067355 ta
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           216867 2 -    242197 aa
i saiBol1.JH378357         C 0 C 0
s aotNan1.NW_018509740v1     286472 2 -    457564 aa
i aotNan1.NW_018509740v1   I 494 C 0
s mm10.chr17               57926308 1 -  94987271 t-
i mm10.chr17               I 1 C 0
s canFam3.chr35            26223012 2 +  26524999 aa
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            31142 2 +    102524 AA
i dasNov3.JH582591         I 515 C 0
e micMur3.chr6                96291 979 + 123392446 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e otoGar3.GL873550           104427 30 +  18854210 I
e cebCap1.NW_016107755v1     208832 1694 -   1771730 I
e calJac3.chr4             30069347 85 + 171630274 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=36213.000000
s hg38.chr6_GL000254v2_alt   882392 5 +   4827813 AAAAA
s panTro5.chr6             29845167 5 + 175400573 aaaaA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079533 5 + 173848474 aaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886151 5 +   6154872 aaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075406 5 + 172585720 aaaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738250 5 - 170955103 aaaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2786955 5 -   2996164 aaaat
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994128 5 -  71996105 aaaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170354 5 +    290775 aaaaT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629088 5 -   3067355 aaaat
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           216869 5 -    242197 aaaaa
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     210526 5 -   1771730 aaaaa
i cebCap1.NW_016107755v1   I 1694 C 0
s aotNan1.NW_018509740v1     286474 5 -    457564 aaaga
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57926309 5 -  94987271 aaaaa
i mm10.chr17               C 0 C 0
s canFam3.chr35            26223014 5 +  26524999 aaaaa
i canFam3.chr35            C 0 I 15
s dasNov3.JH582591            31144 5 +    102524 ACAAT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e otoGar3.GL873550           104427 30 +  18854210 I
e calJac3.chr4             30069347 85 + 171630274 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=84030.000000
s hg38.chr6_GL000254v2_alt   882397 10 +   4827813 AAAAGTCTGT
s panTro5.chr6             29845172 10 + 175400573 AAAAGTCTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079538 10 + 173848474 aaaAGTCTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886156 10 +   6154872 aaAAGTCTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075411 10 + 172585720 aaaaGTCTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738255 10 - 170955103 aaaaGTCTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2786960 10 -   2996164 aaaaGTCTGT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994133 10 -  71996105 aaaaGTCTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170359 10 +    290775 ACAAGTCTGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629093 10 -   3067355 aaaaGTCTGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30069432 10 + 171630274 AGGAGTCCAC
i calJac3.chr4             I 85 C 0
s saiBol1.JH378357           216874 10 -    242197 aaaTGTCTAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     210531 10 -   1771730 agaaGTCTGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     286479 10 -    457564 aaaaTTCTGT
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57926314 10 -  94987271 gaaagtctGG
i mm10.chr17               C 0 I 1
s canFam3.chr35            26223034 10 +  26524999 AAATGTCCAT
i canFam3.chr35            I 15 I 8
s dasNov3.JH582591            31149 10 +    102524 AATTGTCCAT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e otoGar3.GL873550           104427 30 +  18854210 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=415093.000000
s hg38.chr6_GL000254v2_alt   882407 44 +   4827813 TGGATAGATAAATGGATGAATTCATATTCTAATCA----TTttacctg
s panTro5.chr6             29845182 44 + 175400573 TGGATAGATAAATGGATGAATTCATATTCTAATCA----TTttacctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079548 44 + 173848474 TGGATAGATAAATGGATGAATTCATATTCTAATCA----TTTTACCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886166 44 +   6154872 TGGATAGATAAATGGATGAATTCATATTCTAATCA----TTttacctg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075421 44 + 172585720 TGGATAGATAAAGGGATGAATTCATATTCTAATCA----TTttacctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738265 44 - 170955103 TGGATAGATAAAGGGATGAATTCATATTCTAATCA----TTttacctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2786970 44 -   2996164 TGGATAGATAAAGGGATGAATTCATATTCTAATCA----TTttacctg
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994143 44 -  71996105 TGGATAGATAAAGGGATGAATTCATATTCTAATCA----TTTTACCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170369 44 +    290775 TGGATAGATAAAGGGATGAATTCATATTCTAATCA----TTttacctg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629103 44 -   3067355 TGGATAGATAAAGGGATGAATTCATATTCTAATCA----TTTTACCTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30069442 44 + 171630274 TGGGTAGATAAATGGATGAATTTATATTTTAATTA----TTCTACTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           216884 44 -    242197 TGGGTAGATAAATGGATGAATTTATATTTTAATTA----TTCTACTTG
i saiBol1.JH378357         C 0 I 307
s cebCap1.NW_016107755v1     210541 44 -   1771730 TAGGTAGATAAATGGATGAATTTATATTTTAATTA----TTCTACTTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     286489 44 -    457564 TGGGTAGATAAATGGATGAATTTATATTTTAATTA----TTCTACTTG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           104457 48 +  18854210 TAAACAGATAGATGAATAAACTCCAATTTTAATAAATCCATTTACCTG
i otoGar3.GL873550         I 30 C 0
s mm10.chr17               57926325 48 -  94987271 TGGATAAGTAGATGAAtgggttctaactctaattaaaccacttaccta
i mm10.chr17               I 1 C 0
s canFam3.chr35            26223052 44 +  26524999 TAAACAGATAGATGAATGAACTCCAATTCCAAACA----GTTcaccta
i canFam3.chr35            I 8 I 4
s dasNov3.JH582591            31159 42 +    102524 TGGATGGACAGACATACAAATTCTAA--CTAATGC----ACTCCCTTG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=569138.000000
s hg38.chr6_GL000254v2_alt   882451 67 +   4827813 ctatgaaatctcaaacaagttatta----------------------------aacctcact-agttggttattcagctttaaaatgagaataata
s panTro5.chr6             29845226 67 + 175400573 ctatgaaatctcaaacaagttatta----------------------------aacctcact-agttggttattcagctttaaaatgagaataata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079592 67 + 173848474 CTATGAAATCTCAAACAAGTTATTA----------------------------AACCTCACT-AGTTGGTTATTCAGCTTTAAAATGAGAATAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886210 67 +   6154872 ctatgaagtctcaaataagttatta----------------------------aacctcact-agttggttattcagctttaaaatgagaataata
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075465 67 + 172585720 ctatgaaatctcaaacaagttatta----------------------------aacctcact-agttggttattcagctttaaaatgagaataata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738309 67 - 170955103 ctatgaaatctcaaacaagttatta----------------------------aacctcact-agttggttattcagctttaaaatgagaataata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787014 67 -   2996164 ctatgaaatctcaaacaagttatta----------------------------aacctcact-agttggttattcagctttaaaatgagaataata
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994187 67 -  71996105 CTATGAAATCTCAAACAAACTATTA----------------------------AACCTCACT-AGTTGGTTATTCAGCTTTAAAATGAGAATAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170413 67 +    290775 ctatgaaatctcaaacaagctatta----------------------------aacctcact-agttggttattcagctttaaaatgagaataata
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629147 67 -   3067355 CAATGAAATCTCAAAAAAGTTATTA----------------------------AACCTCACT-AGTTGGTTATTCAGCTTTAAAATGAGAATAATA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30069486 95 + 171630274 CTATAAAATCTCAAACAAGTTATTAAACCCCATCTCTACTAAAAAAAAAAAATAACCTCACT-AGCTGGTTATTCAGCTTTAAAATGAGAATAATA
i calJac3.chr4             C 0 I 311
s cebCap1.NW_016107755v1     210585 63 -   1771730 CTATAAAATCT----CAAGTTATTA----------------------------AACCTCACT-AGTTGGTTATTCAGCTTTAAAATGAGAATAATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     286533 67 -    457564 CTATAAAATCTCAAAAAAGTTATTA----------------------------AACCTCACT-AGTTGGATATTCAGCTTTAAAATGAGAATAATA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           104505 32 +  18854210 CTATGAAATCCCAGACA----------------------------------------------------------------AAAATAGGAATACTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57926373 68 -  94987271 ctaagaaatctcaagcaagttatta----------------------------aatctcactaaactgagtattcagcttgaaaatgggaataata
i mm10.chr17               C 0 C 0
s canFam3.chr35            26223100 67 +  26524999 ctgtgtaacatcaaacgagtcacta----------------------------aacttctgt-agttggttattcaattttaacatgaggataatc
i canFam3.chr35            I 4 I 3
s dasNov3.JH582591            31201 58 +    102524 CTGTGTAATCACAAACAAGTTATTA----------------------------GCCCTCACT-AATTGGTTTTTCACCTTTTACAAA---------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e saiBol1.JH378357           216928 307 -    242197 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=61240.000000
s hg38.chr6_GL000254v2_alt   882518 6 +   4827813 ctatct
s panTro5.chr6             29845293 6 + 175400573 ctatct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079659 6 + 173848474 CTATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886277 6 +   6154872 ctatct
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075532 6 + 172585720 ctatct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738376 6 - 170955103 ctatct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787081 6 -   2996164 ctatct
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994254 6 -  71996105 CTATCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170480 6 +    290775 ctatct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629214 6 -   3067355 CTATCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30069892 6 + 171630274 ctgtct
i calJac3.chr4             I 311 I 3
s cebCap1.NW_016107755v1     210648 6 -   1771730 CTATCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     286600 6 -    457564 CTATCT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           104537 6 +  18854210 CTACCT
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57926441 6 -  94987271 ctgtgt
i mm10.chr17               C 0 I 1
s canFam3.chr35            26223170 6 +  26524999 ctacct
i canFam3.chr35            I 3 I 1
s dasNov3.JH582591            31259 6 +    102524 CTACAT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e saiBol1.JH378357           216928 307 -    242197 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=19491.000000
s hg38.chr6_GL000254v2_alt   882524 4 +   4827813 -aAAA
s panTro5.chr6             29845299 4 + 175400573 -AAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079665 4 + 173848474 -AAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886283 4 +   6154872 -AAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075538 4 + 172585720 -AAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738382 4 - 170955103 -aaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787087 4 -   2996164 -AAAA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994260 4 -  71996105 -AAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170486 4 +    290775 -AAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629220 4 -   3067355 -AAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30069901 4 + 171630274 -aaaa
i calJac3.chr4             I 3 C 0
s saiBol1.JH378357           217235 4 -    242197 -aaga
i saiBol1.JH378357         I 307 C 0
s cebCap1.NW_016107755v1     210654 4 -   1771730 -AAAA
i cebCap1.NW_016107755v1   C 0 I 614
s aotNan1.NW_018509740v1     286606 4 -    457564 -AAAA
i aotNan1.NW_018509740v1   C 0 I 6659
s otoGar3.GL873550           104544 3 +  18854210 -AAA-
i otoGar3.GL873550         I 1 I 4
s mm10.chr17               57926448 3 -  94987271 -aaa-
i mm10.chr17               I 1 I 6
s canFam3.chr35            26223177 3 +  26524999 -aag-
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            31265 4 +    102524 GGAA-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=25918.000000
s hg38.chr6_GL000254v2_alt   882528 7 +   4827813 TAGTATG
s panTro5.chr6             29845303 7 + 175400573 TAGTATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079669 7 + 173848474 TAGTATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886287 7 +   6154872 TAGTATG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075542 7 + 172585720 TAGTGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738386 7 - 170955103 tagtgtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787091 7 -   2996164 TAGTGTG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994264 7 -  71996105 TAGTGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170490 7 +    290775 TAGTGTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629224 7 -   3067355 TAGTGTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30069905 7 + 171630274 aaaaaag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217239 7 -    242197 aagaaaG
i saiBol1.JH378357         C 0 C 0
s otoGar3.GL873550           104551 7 +  18854210 TAGTAAA
i otoGar3.GL873550         I 4 C 0
s mm10.chr17               57926457 7 -  94987271 cagcaag
i mm10.chr17               I 6 C 0
s canFam3.chr35            26223180 6 +  26524999 -agttat
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            31269 7 +    102524 GAGTTAT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e aotNan1.NW_018509740v1     286610 6659 -    457564 I
e cebCap1.NW_016107755v1     210658 614 -   1771730 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=6392.000000
s hg38.chr6_GL000254v2_alt   882535 1 +   4827813 A
s panTro5.chr6             29845310 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079676 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886294 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075549 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738393 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787098 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994271 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170497 1 +    290775 A
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629231 1 -   3067355 A
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     211272 1 -   1771730 a
i cebCap1.NW_016107755v1   I 614 C 0
s otoGar3.GL873550           104558 1 +  18854210 G
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57926464 1 -  94987271 g
i mm10.chr17               C 0 C 0
s canFam3.chr35            26223187 1 +  26524999 a
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            31276 1 +    102524 A
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e saiBol1.JH378357           217246 0 -    242197 C
e aotNan1.NW_018509740v1     286610 6659 -    457564 I
e calJac3.chr4             30069912 0 + 171630274 C
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=57763.000000
s hg38.chr6_GL000254v2_alt   882536  9 +   4827813 --AA-TGAAATT
s panTro5.chr6             29845311  9 + 175400573 --AA-TGAAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079677  9 + 173848474 --AA-TGAAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886295  9 +   6154872 --AA-TGAAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075550  9 + 172585720 --AA-TGAAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738394  9 - 170955103 --aa-tgaaatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787099  9 -   2996164 --AA-TGAAATT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994272  9 -  71996105 --AA-TGAAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170498  9 +    290775 --AA-TGAAATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629232  9 -   3067355 --AA-TGAAATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30069912 10 + 171630274 --aataaaaTTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217246  9 -    242197 --AA-AGAAAGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211273  9 -   1771730 --aa-TGAAGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     293269  9 -    457564 --AA-TGAAATA
i aotNan1.NW_018509740v1   I 6659 C 0
s otoGar3.GL873550           104559  9 +  18854210 --GA-TGAAATA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57926465  8 -  94987271 ---a-ttaagta
i mm10.chr17               C 0 C 0
s canFam3.chr35            26223188  9 +  26524999 --ta-ggaaata
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            31277 11 +    102524 AGGA-TGAAACA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e proCoq1.NW_012152574v1     590526 707 +    730504 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=122867.000000
s hg38.chr6_GL000254v2_alt   882545 12 +   4827813 AGAACATGTATA
s panTro5.chr6             29845320 12 + 175400573 AGAACATGTATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079686 11 + 173848474 AGAACATGTAT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886304 12 +   6154872 AGAACATGTATA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075559 12 + 172585720 AGAACATGTATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738403 12 - 170955103 agaacatgtata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787108 12 -   2996164 AGAACATGTATA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994281 12 -  71996105 AGAACATGTATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170507 12 +    290775 AGAACATGTATA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629241 12 -   3067355 AGAACATGTATA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30069922 12 + 171630274 AGAACCTGTATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217255 12 -    242197 AGAACACATATA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211282 12 -   1771730 AGAACATGTATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     293278 12 -    457564 AGAACGTGTATA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     591233 12 +    730504 AGAACATGTATA
i proCoq1.NW_012152574v1   I 707 C 0
s otoGar3.GL873550           104568 12 +  18854210 AGAACGTGCATA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57926473 10 -  94987271 agaacacata--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26223197 12 +  26524999 gaaacataggta
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            31288 11 +    102524 AGGACATGAGC-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                96291 979 + 123392446 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=208506.000000
s hg38.chr6_GL000254v2_alt   882557 14 +   4827813 AAAATGCTGGG-TAT
s panTro5.chr6             29845332 14 + 175400573 AAAATGCTGGG-TAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079697 14 + 173848474 AAAATGCTGGG-TAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886316 14 +   6154872 AAAATGCTGGG-TAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075571 14 + 172585720 AAAATGCTGGG-TAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738415 14 - 170955103 aaaatgctggg-tat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787120 14 -   2996164 AAAATGCTGGG-TAT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994293 14 -  71996105 AAAATGCTGGG-TAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170519 14 +    290775 AAAATGCTGGG-TAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629253 14 -   3067355 AAAATGCTGGG-TAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30069934 14 + 171630274 AAAATGCTGGG-TAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217267 14 -    242197 AAAATGCTGGG-TAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211294 14 -   1771730 AAAATGCTGGG-TAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     293290 14 -    457564 AAAATGCTGGG-TAT
i aotNan1.NW_018509740v1   C 0 I 273
s micMur3.chr6                97270 14 + 123392446 AAAATGCTGGG-TAT
i micMur3.chr6             I 979 C 0
s proCoq1.NW_012152574v1     591245 13 +    730504 -AAATGCTGGG-TAT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           104580 13 +  18854210 -AAATGCTGGG-TAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57926483 13 -  94987271 -aaacactGCG-TAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26223209 14 +  26524999 -aaatgctGCGTTAT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            31299 14 +    102524 GACATGTCGAG-TAT
i dasNov3.JH582591         C 0 C 0
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=32362.000000
s hg38.chr6_GL000254v2_alt   882571 5 +   4827813 GAAGT
s panTro5.chr6             29845346 5 + 175400573 GAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079711 5 + 173848474 GAAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886330 5 +   6154872 GAAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075585 5 + 172585720 AAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738429 5 - 170955103 aAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787134 5 -   2996164 AAAAT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994307 5 -  71996105 AAAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170533 5 +    290775 AAAGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629267 5 -   3067355 AAAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30069948 1 + 171630274 A----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217281 1 -    242197 G----
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211308 5 -   1771730 AAAGT
i cebCap1.NW_016107755v1   C 0 I 317
s micMur3.chr6                97284 5 + 123392446 AAAGT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     591258 5 +    730504 AAAGT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           104593 5 +  18854210 AAAGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57926496 5 -  94987271 GAAGT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26223223 5 +  26524999 AAAAT
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            31313 5 +    102524 AAAGT
i dasNov3.JH582591         C 0 C 0
e aotNan1.NW_018509740v1     293304 273 -    457564 I
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=507467.000000
s hg38.chr6_GL000254v2_alt   882576 43 +   4827813 AAGTTACATTTTCTCTACGTGAATTTCCTTGACTCTCAACCTC
s panTro5.chr6             29845351 43 + 175400573 AAGTTACATTTTCTCTGCGTGAATTTCCTtgactctcaacctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079716 43 + 173848474 AAGTTACATTTTCTCTACGTGAATTTCCTtgactctcaacctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886335 43 +   6154872 AAGTTACATTTTCTCTACATGAATTTCCTTGACTCTCAACCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075590 43 + 172585720 AAGTTGCATTTTTTCAATGTGAATTTCCTTGACTCTCAACCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738434 43 - 170955103 AAGTTGCATTTTTTCAATGTGAATTTCCTTGACTCTCAACCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787139 43 -   2996164 AAGTTGCATTTTTTCAATGTGAATTTCCTTGACTCTCAACCTC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994312 43 -  71996105 AAGTTACATTTTTTCTATGTGAATTTCCTTGACTCTCAACCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170538 39 +    290775 A----ACATTTTTTCTATGTGAATTTCCTTGACTTTCAACCTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629272 43 -   3067355 AAGTTACATTTTTTCTATGTGAATTTCCTTGACTCTCAACCTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30069949 43 + 171630274 AAGTTACATTTTCTCTATGTGAATTTCCTTGACTCTCAATCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217282 43 -    242197 AAGTTACATTTTCTCTATGTGAATTTCCTtgactctcaatctc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211630 43 -   1771730 AAGTTACATTTTCTCTATGTGAATTTCCTTGACTCTCAATCTT
i cebCap1.NW_016107755v1   I 317 C 0
s aotNan1.NW_018509740v1     293577 43 -    457564 AAGTTACATTTTCTCTATGTGAATTTCCTtgactctcaatctc
i aotNan1.NW_018509740v1   I 273 C 0
s micMur3.chr6                97289 39 + 123392446 AAATTACATTTTC--TCTGTAAATTTCCCTG--TCTTGACCTC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     591263 41 +    730504 AAATTACATTTTCTGTTTGTAAATTTCCCTG--TCTCGGCCTC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           104598 41 +  18854210 AAGCTACATTTTTTCTTTGTAAATTTCCTTA--TCTCAACTTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57926501 42 -  94987271 ATATTACATTCTCTCTCTACGAGTCTCCCTGG-TTGCACCCTT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26223229 43 +  26524999 AAGCTACAGTTTCTCTTTGCAAATTTCCCCATCTCTCAACCTC
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            31318 41 +    102524 AAGTCGTATTTTCTCTA-ATGaacttcc-tggctctcaacctc
i dasNov3.JH582591         C 0 C 0
e cerAty1.NW_012002711v1     536862 1397 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=394009.000000
s hg38.chr6_GL000254v2_alt   882619 27 +   4827813 ATCTTTG-TTATTGATACTCAGATCTAT
s panTro5.chr6             29845394 27 + 175400573 atcttta-ttattgatactcagatctat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079759 27 + 173848474 atctttg-ttattgatactcagatctat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886378 27 +   6154872 ACCTTTG-TTATTGATACTCAGATCTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075633 27 + 172585720 ATCTTTG-TTACTGATACTCAGTTCTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738477 27 - 170955103 ATCTTTG-TTACTGATACTCAGTTCTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787182 27 -   2996164 ATCTTTG-TTACTGATACTCAGTTCTAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     538259 27 +    766320 ATCTTTG-TTACTGATACTCAGTTCTAT
i cerAty1.NW_012002711v1   I 1397 C 0
s chlSab2.chr17            28994355 27 -  71996105 ATCTTTG-TTACTGATACTCAGTTCTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170577 27 +    290775 ATCTTTG-TTACTGATACTCAGTTCTAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629315 27 -   3067355 ATCTTTG-TTACTGATACTCAGTTCTAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30069992 27 + 171630274 ATCTTTG-TTATTGATACTGAGATCTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217325 27 -    242197 atctttg-ttattgatactgagatctat
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211673 27 -   1771730 ATCTTTG-TTATTGATACTGAGACTTAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     293620 27 -    457564 atctttg-ttattgatactgagatctat
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                97328 27 + 123392446 ATCTTTG-TAACTGACACTCAGATCTAT
i micMur3.chr6             C 0 I 59
s proCoq1.NW_012152574v1     591304 27 +    730504 ATCTTTG-TAACTGACACTCAGATCTAT
i proCoq1.NW_012152574v1   C 0 I 61
s otoGar3.GL873550           104639 28 +  18854210 ATCTTTGTTATCTGATGCTCAGATCTAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57926543 27 -  94987271 GTCTTTG-TTCCCAATGCTCAGGCCTGT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26223272 27 +  26524999 ATCTTTG-TCACTGGTACTCAGATCTAC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            31359 27 +    102524 agtttgg-tcattgacactcgggtctat
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=49176.000000
s hg38.chr6_GL000254v2_alt   882646 4 +   4827813 AATT
s panTro5.chr6             29845421 4 + 175400573 aatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079786 4 + 173848474 aatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886405 4 +   6154872 AATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075660 4 + 172585720 AATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738504 4 - 170955103 AATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787209 4 -   2996164 AATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     538286 4 +    766320 AATT
i cerAty1.NW_012002711v1   C 0 I 292
s chlSab2.chr17            28994382 4 -  71996105 AATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170604 4 +    290775 AATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629342 4 -   3067355 AATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070019 4 + 171630274 AATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217352 4 -    242197 aatt
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211700 4 -   1771730 AATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     293647 4 -    457564 aatt
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           104667 4 +  18854210 ACTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57926570 4 -  94987271 AATT
i mm10.chr17               C 0 I 1
s canFam3.chr35            26223299 3 +  26524999 AAT-
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            31386 4 +    102524 aatt
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                97355 59 + 123392446 I
e proCoq1.NW_012152574v1     591331 61 +    730504 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=90755.000000
s hg38.chr6_GL000254v2_alt   882650 13 +   4827813 TCAGCC--------CAATATT
s panTro5.chr6             29845425 13 + 175400573 tcagcc--------caatatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079790 13 + 173848474 tcagcc--------caatatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886409 13 +   6154872 TCAGCC--------CAGTATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075664 21 + 172585720 TCAGCCAAATATTTCAATATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738508 21 - 170955103 TCAGCCAAATATTTCAATATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787213 21 -   2996164 TCAGCCAAATATTTCAATATT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994386 21 -  71996105 TCAGCCAAATATTTCAATATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170608 13 +    290775 TCAGCCA--------AATATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629346 21 -   3067355 TCAGCCAAATATTTCAATATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070023 13 + 171630274 TCAGCC--------CAATATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217356 13 -    242197 tcagcc--------caagatt
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211704 13 -   1771730 TCAGCC--------CAATATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     293651 13 -    457564 tcagcc--------caatatt
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           104671 13 +  18854210 CTAGCC--------CAATATT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57926575 12 -  94987271 TGACCC--------CAAACC-
i mm10.chr17               I 1 C 0
s canFam3.chr35            26223302 13 +  26524999 CCATCT--------CAGCATT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            31390 13 +    102524 ccagcc--------cagtatc
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                97355 59 + 123392446 I
e proCoq1.NW_012152574v1     591331 61 +    730504 I
e cerAty1.NW_012002711v1     538290 292 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=6695.000000
s hg38.chr6_GL000254v2_alt   882663 1 +   4827813 T
s panTro5.chr6             29845438 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079803 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886422 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075685 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738529 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787234 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994407 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170621 1 +    290775 T
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629367 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           104684 1 +  18854210 C
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57926587 1 -  94987271 T
i mm10.chr17               C 0 C 0
s canFam3.chr35            26223315 1 +  26524999 T
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            31403 1 +    102524 t
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                97355 59 + 123392446 I
e proCoq1.NW_012152574v1     591331 61 +    730504 I
e saiBol1.JH378357           217369 0 -    242197 C
e aotNan1.NW_018509740v1     293664 0 -    457564 C
e cebCap1.NW_016107755v1     211717 0 -   1771730 C
e calJac3.chr4             30070036 0 + 171630274 C
e cerAty1.NW_012002711v1     538290 292 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=36630.000000
s hg38.chr6_GL000254v2_alt   882664 6 +   4827813 CAAGTC
s panTro5.chr6             29845439 6 + 175400573 caagtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079804 6 + 173848474 caagtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886423 6 +   6154872 CAAGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075686 6 + 172585720 CAAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738530 6 - 170955103 CAAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787235 6 -   2996164 CAAGTC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994408 6 -  71996105 CAAGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170622 6 +    290775 CAAGTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629368 6 -   3067355 CAAGTC
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57926588 6 -  94987271 TACATC
i mm10.chr17               C 0 I 544
s canFam3.chr35            26223316 6 +  26524999 CAAGTC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            31404 6 +    102524 caagtc
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                97355 59 + 123392446 I
e proCoq1.NW_012152574v1     591331 61 +    730504 I
e saiBol1.JH378357           217369 0 -    242197 C
e otoGar3.GL873550           104685 0 +  18854210 C
e aotNan1.NW_018509740v1     293664 0 -    457564 C
e cebCap1.NW_016107755v1     211717 0 -   1771730 C
e calJac3.chr4             30070036 0 + 171630274 C
e cerAty1.NW_012002711v1     538290 292 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=5500.000000
s hg38.chr6_GL000254v2_alt   882670 1 +   4827813 C
s panTro5.chr6             29845445 1 + 175400573 c
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079810 1 + 173848474 c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886429 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075692 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738536 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787241 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994414 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170628 1 +    290775 C
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629374 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35            26223322 1 +  26524999 C
i canFam3.chr35            C 0 I 1
e micMur3.chr6                97355 59 + 123392446 I
e mm10.chr17               57926594 544 -  94987271 I
e dasNov3.JH582591            31410 0 +    102524 C
e proCoq1.NW_012152574v1     591331 61 +    730504 I
e saiBol1.JH378357           217369 0 -    242197 C
e otoGar3.GL873550           104685 0 +  18854210 C
e aotNan1.NW_018509740v1     293664 0 -    457564 C
e cebCap1.NW_016107755v1     211717 0 -   1771730 C
e calJac3.chr4             30070036 0 + 171630274 C
e cerAty1.NW_012002711v1     538290 292 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=29315.000000
s hg38.chr6_GL000254v2_alt   882671 10 +   4827813 --ATATTTCTT----------------T
s panTro5.chr6             29845446 10 + 175400573 --atatttctt----------------t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079811 10 + 173848474 --atatttctt----------------t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886430 10 +   6154872 --ATATTTCTT----------------T
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075693 22 + 172585720 --ATATTTCttttcttttttttc----t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738537 26 - 170955103 --ATATTTCTTTTCttttttttcttctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787242 22 -   2996164 --ATATTTCTTTTCTTTTTTTTC----T
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994415 22 -  71996105 --ATAtttcttttcttttttttc----t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170629 22 +    290775 --ATAtttcttttcttttttttc----t
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629375 22 -   3067355 --ATAtttcttttcttttttttc----t
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH582591            31410 10 +    102524 atgtatctcc------------------
i dasNov3.JH582591         C 0 I 273
e micMur3.chr6                97355 59 + 123392446 I
e mm10.chr17               57926594 544 -  94987271 I
e proCoq1.NW_012152574v1     591331 61 +    730504 I
e canFam3.chr35            26223323  1 +  26524999 I
e saiBol1.JH378357           217369  0 -    242197 C
e otoGar3.GL873550           104685  0 +  18854210 C
e aotNan1.NW_018509740v1     293664  0 -    457564 C
e cebCap1.NW_016107755v1     211717  0 -   1771730 C
e calJac3.chr4             30070036  0 + 171630274 C
e cerAty1.NW_012002711v1     538290 292 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=864286.000000
s hg38.chr6_GL000254v2_alt   882681 237 +   4827813 TCTttcttt--------------------ctttcttttt---ttttttttttttttgagatggagtcttgctctgttgccaggctggagtgcagtagtgcgatcttggctcactgcaacctctgcctcctgggttcaagcgattcttgtgtctcagcctcccaagtagctgggattacaggcacacgacaccacacccagctgatttgtgtatttttagcagagacggggtttcaccatgttagccaggctggtcttgaa
s panTro5.chr6             29845456 235 + 175400573 tctttcttt--------------------ctt--attta---tttattttttttttgagatggagtcttgctctgttgccaggctggagtgcagtagtgcgatcttggctcactgcaacctctgcctcctgggttcaagcgattcttgtgtctcagcctcccgagtagctgggattacaggcacacgacaccacacccagctgatttgtgtatttttagcagagacggggtttcaccatgttagccaggctggtcttgaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30079821 234 + 173848474 tctttcttt--------------------ctt--attta----ttattttttttttgagatggagtcttgctctgttgccaggatggagtgcagtagtgcgatcttggctcactgcaacctctgcctcctgggttcaagcgattcttgtgtctcagcctcccgagtagctgggattacaggcacacgacaccacacccagctgatttgtgtatttttagcagagacggggtttcaccatgttagccaggctggtcttgaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886440 235 +   6154872 TCtttcttt--------------------ctt--ttttt---ttttttttttttttgagatggagtcttgctctgttgccaggctgtagtgcagtagtgcaatcttggctcactgcaacctctgcctcctgggttcaagcgattcttgtgtctctgcctcctgagtagctgggattacaggcacacgacaccacacccagctgatttgtgtatttttagcagagacggggtttcaccgtgttagccaggctggtcttgaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075715 232 + 172585720 tctttcttt--------------------ttt--ttttctttttttttttttttttgagatggagtcttgctctgttgccaggctggagtgcagtggtgcgatcttggctcactgcaacctct------tagtttcaagagattcttgtgccttagcctcccaagtagctgggattacaggcacgcaacaccacacccagctgatttgtgtatttttagcagatacagggtttcaccatgttagccgggctggtcttgaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738563 229 - 170955103 tctttcttt--------------------ttt--ttttc---ttttttttttttttgagatggagtcttgctctgttgccaggctggagtgcagtggtgcaatcttggctcactgcaacctct------tagtttcaagagattcttgtgccttagcctcccaagtagctgggattacaggcacgcaacaccacacccagctgatttgtgtatttttagcagatacagggtttcaccatgttagccgggctggtcttgaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787264 229 -   2996164 TCtttcttt--------------------ttt--ttttc---ttttttttttttttgagatggagtcttgctctgttgccaggctggagtgcagtggtgcgatcttggctcactgcaacctct------tagtttcaagagattcttgtgccttagcctcccaagtagctgggattacaggcacgcaacaccacacccagctgatttgtgtatttttagcagatacagggcttcaccatgttagccgggctggtcttgaa
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            28994437 249 -  71996105 tctttctttctctctctcTTTCtttttttttt--ttttt---ttttttttttttttgagatggagtcttgctctgttgccaggctggagtgcagtggtgcgatcttggctcactgcaacctct------tggtttcaagagattcttgtgccttagcctcccaagtagctgggattacaggcacgcaacaccacacccagctgatttgtgtatttttagcagatacagggtttcaccatgttagccaggctggtcttgaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170651 238 +    290775 tctttctttctctctctc-----------tct--ttttt---ttttttttttttttgagatggagtcttgctctgttgccaggctggagtgcagtggtgtgatcttggctcactgcaacctct------tggtttcaacagattcttgtgccttagcctcccaagtagctgggattacaagcacgcaacaccacacccagctgatttgtgtatttttagcagatacagggtttcaccatgttagccaggctggtcttgaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629397 236 -   3067355 tctttctttctctctc-------------tct--ctctt---ttttttttttttttgagatggagtcttgctctgttgccaggctggagtgcagtggtgcgatcttggctcactgcaacctct------tggtttcaagagattcttgtgcctcagcctcccgagtagctgggattacaggcacacaacaccacacccagctgatttgtgtatttttagcagagacagggtttcaccatgttagccaggctggtcttgaa
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6                97355  59 + 123392446 I
e mm10.chr17               57926594 544 -  94987271 I
e dasNov3.JH582591            31420 273 +    102524 I
e proCoq1.NW_012152574v1     591331  61 +    730504 I
e canFam3.chr35            26223323   1 +  26524999 I
e saiBol1.JH378357           217369   0 -    242197 C
e otoGar3.GL873550           104685   0 +  18854210 C
e aotNan1.NW_018509740v1     293664   0 -    457564 C
e cebCap1.NW_016107755v1     211717   0 -   1771730 C
e calJac3.chr4             30070036   0 + 171630274 C
e cerAty1.NW_012002711v1     538290 292 +    766320 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=359243.000000
s hg38.chr6_GL000254v2_alt   882918 75 +   4827813 ctcctggccttgtgatccacctgcctcagcctcccaaagtgctgggattataggcgtgagccaccgcgcccagcc
s panTro5.chr6             29845691 75 + 175400573 ctcctgacgttgtgatccacctgcctcagcctcccaaagtgctgggattataggcgtgagccaccgcgcccagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080055 75 + 173848474 ctcctgaccttgtgatccacctgcctcagcctcccaaagtgctgggattataggcgtgagccaccgcacccagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886675 75 +   6154872 ctcctgaccttgtgatccacctgcctcagcctcccaaagtgctgggattataggcgtgagccaccgcgcccagcc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30075947 75 + 172585720 ctcctgaccttgtgatcagcctgcgtcggcctcccaaagtactgggattacaggcgtgagccactgcgcctggcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738792 75 - 170955103 ctcctgaccttgtgatccgcctgcgtcggcctcccaaagtactgggattacaggcgtgagccactgcgcctggcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787493 75 -   2996164 ctcctgaccttgtgatccgcctgcgtcggcctcccaaagtactgggattacaggcgtgagccactgcgcctggcc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     538582 75 +    766320 ctcctgaccttgtgatccgcctgcgtcagcctcccaaagtactgggattataggcgtgagccaccgcgcctggcc
i cerAty1.NW_012002711v1   I 292 C 0
s chlSab2.chr17            28994686 75 -  71996105 ctcctgaccttgtgatccgcctgcgtcggcctcccaaagtactgggattataggcgtgagccaccgcgcctggcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170889 75 +    290775 ctcctgaccttgtgatccgcctgcgtcagcctcccaaagtactgggattataggcgtgagccaccgcgcctggcc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629633 75 -   3067355 ctcctgaccttgtgatccacctgcgtcggcctcccaaagtgctgggattataggcatgagccactgcgcctggcc
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6                97355 59 + 123392446 I
e mm10.chr17               57926594 544 -  94987271 I
e dasNov3.JH582591            31420 273 +    102524 I
e proCoq1.NW_012152574v1     591331 61 +    730504 I
e canFam3.chr35            26223323  1 +  26524999 I
e saiBol1.JH378357           217369  0 -    242197 C
e otoGar3.GL873550           104685  0 +  18854210 C
e aotNan1.NW_018509740v1     293664  0 -    457564 C
e cebCap1.NW_016107755v1     211717  0 -   1771730 C
e calJac3.chr4             30070036  0 + 171630274 C
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=9555.000000
s hg38.chr6_GL000254v2_alt   882993 1 +   4827813 T
s panTro5.chr6             29845766 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080130 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886750 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30076022 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738867 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787568 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     538657 1 +    766320 T
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28994761 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170964 1 +    290775 T
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629708 1 -   3067355 t
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070036 1 + 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217369 1 -    242197 t
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211717 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     293664 1 -    457564 t
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6                97355 59 + 123392446 I
e mm10.chr17               57926594 544 -  94987271 I
e dasNov3.JH582591            31420 273 +    102524 I
e proCoq1.NW_012152574v1     591331 61 +    730504 I
e canFam3.chr35            26223323 1 +  26524999 I
e otoGar3.GL873550           104685 0 +  18854210 C
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=75420.000000
s hg38.chr6_GL000254v2_alt   882994 7 +   4827813 CAAGTCC
s panTro5.chr6             29845767 7 + 175400573 caagtcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080131 7 + 173848474 caagtcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886751 7 +   6154872 CAAGTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30076023 7 + 172585720 CAAGTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738868 7 - 170955103 CAAGTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787569 7 -   2996164 CAAGTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     538658 7 +    766320 CAAGTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28994762 7 -  71996105 CAAGTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170965 7 +    290775 CAAGTCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629709 7 -   3067355 caagtcc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070037 7 + 171630274 CAAGTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217370 7 -    242197 caagtcc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211718 7 -   1771730 CAAGTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     293665 7 -    457564 caagtcc
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           104685 7 +  18854210 CAACTCT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                97355 59 + 123392446 I
e mm10.chr17               57926594 544 -  94987271 I
e dasNov3.JH582591            31420 273 +    102524 I
e proCoq1.NW_012152574v1     591331 61 +    730504 I
e canFam3.chr35            26223323 1 +  26524999 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=310509.000000
s hg38.chr6_GL000254v2_alt   883001 31 +   4827813 ATATTTCTAACTGACTCTGAGGCATTT-TTAA
s panTro5.chr6             29845774 31 + 175400573 atatttctaactgactctgaggcattt-ttaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080138 31 + 173848474 atatttctaactgactctgaggcattt-ttaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886758 31 +   6154872 ATATTTCTAACTGACTCTGAGGCATTT-TTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30076030 32 + 172585720 ATATTTCTAACTGACTCTGAGGCATTTATAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738875 32 - 170955103 ATATTTCTAACTGACTCTGAGGCATTTATAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787576 32 -   2996164 ATATTTCTAACTGACTCTGAGGCATTTATAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     538665 32 +    766320 ATATTTCTAACTGACTCTGAGGCATTTATAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28994769 32 -  71996105 ATATTTCTAACTGACTCTGAGGCATTTATAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     170972 32 +    290775 ATATTTCTAACTGACTCTGAGGCATTTATAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629716 32 -   3067355 atatttctaactgactctgaggcatttataaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070044 32 + 171630274 ATATTTCTAACTGACTCTCAGGCATTTATAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217377 32 -    242197 gtatttctagccgactctgagacatttataaa
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211725 32 -   1771730 ATATTTCTAACTGACTCTGAGGCATTTATAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     293672 32 -    457564 atatttctaactgactctgaggcatttataaa
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           104692 31 +  18854210 GCATCTCTGACTAATTCTAAGGCATTTGTAA-
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26223324 31 +  26524999 GTATCCCCAGCTGTCTCTGAGGCATTTGTAG-
i canFam3.chr35            I 1 I 1
e micMur3.chr6                97355 59 + 123392446 I
e mm10.chr17               57926594 544 -  94987271 I
e dasNov3.JH582591            31420 273 +    102524 I
e proCoq1.NW_012152574v1     591331 61 +    730504 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=13960.000000
s hg38.chr6_GL000254v2_alt   883032 2 +   4827813 TG
s panTro5.chr6             29845805 2 + 175400573 tg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080169 2 + 173848474 tg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886789 2 +   6154872 TG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30076062 2 + 172585720 TG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738907 2 - 170955103 TG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787608 2 -   2996164 TG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     538697 2 +    766320 TG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28994801 2 -  71996105 TG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171004 2 +    290775 TG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629748 2 -   3067355 tg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070076 2 + 171630274 TT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217409 2 -    242197 tt
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211757 2 -   1771730 TT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     293704 2 -    457564 tt
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                97414 2 + 123392446 TG
i micMur3.chr6             I 59 C 0
s otoGar3.GL873550           104724 2 +  18854210 TA
i otoGar3.GL873550         I 1 C 0
s canFam3.chr35            26223356 2 +  26524999 TA
i canFam3.chr35            I 1 C 0
e mm10.chr17               57926594 544 -  94987271 I
e dasNov3.JH582591            31420 273 +    102524 I
e proCoq1.NW_012152574v1     591331 61 +    730504 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=273201.000000
s hg38.chr6_GL000254v2_alt   883034 21 +   4827813 TATGATGAATAATCTCAAAAT
s panTro5.chr6             29845807 21 + 175400573 tatgatgaataatctcaaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080171 21 + 173848474 tatgatgaataatctcaaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886791 21 +   6154872 TATGATGAATAATCTCAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30076064 21 + 172585720 TATGATGAATAATCTCAAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738909 21 - 170955103 TATGATGAATAATCTCAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787610 21 -   2996164 TATGATGAATAATCTCAAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     538699 21 +    766320 TATGATGAATAATCTCAAAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28994803 21 -  71996105 TATGATGAATAATCTCAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171006 21 +    290775 TATGATGAATAATCTCAAAAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629750 21 -   3067355 tatgatgaataatttcaaaat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070078 21 + 171630274 CATGATGAATAATCTCAAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217411 21 -    242197 aatgatgaatggtctcgaaat
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211759 21 -   1771730 AATGATGAATAATCTCAAAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     293706 21 -    457564 catgatgaataatctcaaaat
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                97416 21 + 123392446 TATGATCAATAATTTCAAATT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     591392 21 +    730504 TATGATCAATAATTTCAAATT
i proCoq1.NW_012152574v1   I 61 C 0
s otoGar3.GL873550           104726 21 +  18854210 TATGATCAATAATCTCAAACT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26223358 21 +  26524999 GATGATCAATGACCTTAAATT
i canFam3.chr35            C 0 C 0
e mm10.chr17               57926594 544 -  94987271 I
e dasNov3.JH582591            31420 273 +    102524 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=637137.000000
s hg38.chr6_GL000254v2_alt   883055 51 +   4827813 CAAAATATCCAAGATGAAGCTCAA-TTTTTTCT----TACTCCCAAACAGCTCCCA
s panTro5.chr6             29845828 51 + 175400573 caaaatatccaagacgaagctcaa-ttttttct----tactcccaaacagctccca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080192 51 + 173848474 caaaatatccaagacgaagctcaa-ttttttct----tactcccaaacagctccca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886812 52 +   6154872 CAAAATATCCAAGATGAAGCTCAATTTTTTTCT----TACTCCCAAACAGCTCCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30076085 49 + 172585720 CAAAATATCCAAGACGAAGCC--A-TTTTTCCT----TACTCCCAAACAGTTCCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738930 49 - 170955103 CAAAATATCCAAGACAAAGCC--A-TTTTTCCT----TACTCCCAAACAGTTCCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787631 49 -   2996164 CAAAATATCCAAGACGAAGCC--A-TTTTTCCT----TACTCCCAAACAGTTCCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     538720 49 +    766320 CAAAATATCCAAGACGAAGCC--A-TTTTTCCT----TACTCCCAAACAGTTCCCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28994824 49 -  71996105 TAAAATATCCAAGACGAAGCC--A-TTTTTCCT----TACTCCCAAACAGTTCCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171027 49 +    290775 CAAAATATCCAAGACGAAGCC--A-TTTTTCCT----TACTCCCAAACAGTTCCCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629771 51 -   3067355 caaaatatccaagacgaagctcaa-tttttcct----tactcccaaacagttccca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070099 51 + 171630274 CAAAATATCCAAGATGAAGCCCAA-TTTTTCCT----TACTCCCAAACAGTTCCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217432 51 -    242197 caaaatatccaagacgaatctcaa-tttttcct----tactcccaaacGGTTCCCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211780 51 -   1771730 CAAAATATCCAAGACAAAGCTCAA-TTTTTCCT----TACTCCCAAACAGTTCCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     293727 51 -    457564 caaaatatccaagacgaagctcaa-tttttcct----tactcccaaacAGTTCCCA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                97437 51 + 123392446 CAAAATATCCAAGGCAAAGCTCAA-TTTTTCCT----CACCTCTCAATACTTCCCA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     591413 51 +    730504 CGAAATATCCAAGACAAAGCTCAA-TTTTTCCT----CACCTCTCAATACTTCCCA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           104747 50 +  18854210 -GAAATATCCAAAACAAAGTTCAA-TTTTTCCT----CACTCCTCACTGCTTCCTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57927138 51 -  94987271 CAAAAGACACAAAACTTAGCTCAC-TTTTTTTTCTCATACTCC----CAGTGTCCA
i mm10.chr17               I 544 C 0
s canFam3.chr35            26223379 51 +  26524999 AAAAACATCTAAGACTAAGCTCAA-CTTTTCTT----TACTCCTCAACACTTCCTG
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            31420 273 +    102524 I
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=40110.000000
s hg38.chr6_GL000254v2_alt   883106 2 +   4827813 GT
s panTro5.chr6             29845879 2 + 175400573 gt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080243 2 + 173848474 gt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886864 2 +   6154872 GT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30076134 2 + 172585720 GT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738979 2 - 170955103 GT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787680 2 -   2996164 GT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     538769 2 +    766320 GT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28994873 2 -  71996105 GT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171076 2 +    290775 GT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629822 2 -   3067355 gt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070150 2 + 171630274 GT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217483 2 -    242197 GT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211831 2 -   1771730 GT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     293778 2 -    457564 GT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                97488 2 + 123392446 GT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     591464 2 +    730504 GT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           104797 2 +  18854210 GT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57927189 2 -  94987271 GT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26223430 2 +  26524999 GT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            31693 2 +    102524 GT
i dasNov3.JH582591         I 273 C 0
e nomLeu3.chr1a            74594208 2100 + 122973662 M

a score=975647.000000
s hg38.chr6_GL000254v2_alt   883108 69 +   4827813 --AAATGAGACTGAAGCCTTGGAATT---ACATCAGACCCTTT------CAAATCACTGAGTCCTCTTAACTCTTTTGTT
s panTro5.chr6             29845881 69 + 175400573 --aaatgagactgaagccttggaatt---acatcagacccttt------caaatcactgagtcctcttaactcttttgtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080245 69 + 173848474 --aaatgagactgaagccttggaatt---acatcagacccttt------caaatcactgagtcctcttaactcttttgtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886866 69 +   6154872 --AAATGAGACTGAAGCCTTGGAATT---ACATCAGACCCTTT------CAAATCACTCAGTCCTCTTAACTCTTTTGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596308 69 + 122973662 --AAATGAGGCTAAAGCCTTGGAATC---ACATTAGACCCTTT------CAAATCACTGAGTCCTCTTAAATCTTTTGTG
i nomLeu3.chr1a            M 2100 C 0
s rheMac8.chr4             30076136 69 + 172585720 --AAACGAGACTGAAGCCTTGGAATC---ACAATAGACCCTTT------CAAATCACTGAGTCCTCTTAACTCTTTTGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29738981 69 - 170955103 --AAACGAGACTGAAGCCTTGGAATC---ACAATAGACCCTTT------CAAATCACTGAGTCCTCTTAACTCTTTTGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787682 69 -   2996164 --AAACGAGACTGAAGCCTTGGAATC---ACAATAGACCCTTT------CAAATCACTGAGTCCTCTTAACTCTTTTGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     538771 69 +    766320 --AAACGAGACTGAAGCCTTGGACTC---ACATTAGACCCTTT------CAAATCACTGAGTCCTTTTAACTCTTTTGTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28994875 69 -  71996105 --AAACGAGACTGAAGCCTTGGAATC---ACGTTAGACCCTTT------CAAATCACTGAGTCCTCTTAACTCTTTTGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171078 69 +    290775 --AAACGAGACTGAAGCCTTGGAATC---ACATTAGACCCTTT------CAAATCACTGAGTCCTTTTAACTCTTTTGTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629824 69 -   3067355 --aaacgggactgaagccttggaatc---acattagacccttt------caaatcactgagtcctcttgactcttttgtt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070152 67 + 171630274 --AAATGAGATTGAGGCCTTGGAATC---ACATTGAACTC--T------CAAATCACTGAATCCTCTTAACTCTTTCGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217485 67 -    242197 --AAATGAGATTGAAGCCTTGGAATC---ACATTAAACAC--T------CAAATCACTGAGTCTTCTTAACTCTTTGGTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211833 67 -   1771730 --AAATGAGATTGAAGCCTTGGAATC---ACATTAAACTC--T------CAAATCACTGAGTCCTCTTAACTCTTTTGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     293780 67 -    457564 --AAATGAGATTGAAGCCTTGGAATC---ACATTAAACTC--T------CAAATCACTGAGTCCTCTTAACTCTCTTGTT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                97490 69 + 123392446 --ACATGAGATTGAAACCTTGGAATC---ACATTAGACTCTTT------CAATTCACCAAGTCTTCTTAATTTTTTTATT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     591466 69 +    730504 --ACATGAGATTGAAACCTTGGAATC---ACATTAGACTCTTT------CAATTCACCAAGTCCTCTTAATTCTTTTATT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           104799 72 +  18854210 --ACATGTGATTAAAACCCCGTGATCATAACATTAGACTTTTT------CAATTCATCAAATTCTTTTAATTCTTTTATT
i otoGar3.GL873550         C 0 I 571
s mm10.chr17               57927191 57 -  94987271 --GAATAAGACT----CCAAGTAAAT---ACATA--------T------CAAATCAGGAAATCCTCTTAAGCTGTTTGTT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26223432 68 +  26524999 --AGGTGAGACTGAAGCGTTAGAATC----CCTTAGACTCTTT------CAAATCACCAAGGCCTCTTAATTATTCTGTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            31695 78 +    102524 AAAATTGAGAAAAAAACCTTTAATTA--AACAAAAGATGCTTTGAAAAAAAAATCACCATGTCTTCTTAATTCTGTGACT
i dasNov3.JH582591         C 0 C 0

a score=364805.000000
s hg38.chr6_GL000254v2_alt   883177 26 +   4827813 G-AAATGTTTCATTGATATC-----------GATCCCT
s panTro5.chr6             29845950 26 + 175400573 G-AAATGTTTCATTGATATC-----------GATCCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080314 26 + 173848474 G-AAATGTTTCATTGATATC-----------GATCCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886935 26 +   6154872 G-AAATGTTTCATTGATATC-----------GATCCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596377 28 + 122973662 GAAAAGGTTTCATTGATATC----------GGATCCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076205 26 + 172585720 G-AAATGCTTCATTGATATT-----------GAACCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739050 26 - 170955103 G-AAATGCTTCATTGATATT-----------GAACCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787751 26 -   2996164 G-AAATGCTTCATTGATATT-----------GAACCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     538840 26 +    766320 G-AAATGCTTCATTGATATC-----------GAACCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28994944 26 -  71996105 G-AAATGCTTCATTGATATC-----------GAACCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171147 26 +    290775 G-AAATGCTTCATTGATATC-----------GAACCCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629893 26 -   3067355 G-AAATGTTTCATTGATATC-----------GAACCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070219 26 + 171630274 G-AAACGTTTCATTGATATC-----------GATCCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217552 26 -    242197 G-AAATGTTTCATTGATATC-----------GATCCTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211900 26 -   1771730 G-AAAAGTTTCATTGATATC-----------GATCCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     293847 26 -    457564 G-AAACGTTTCATTGACATC-----------GATCCTT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                97559 25 + 123392446 G-AAATGTTTCATTAGTATC------------ATCCCT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     591535 25 +    730504 G-AAATGTTTCATTAATATC------------GCCCCT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           105442 25 +  18854210 G-AAATGTTTCATTAATATC------------ACCCCA
i otoGar3.GL873550         I 571 C 0
s mm10.chr17               57927248 25 -  94987271 -CTAATGTTTCATTAATACC------------ATCCCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26223500 37 +  26524999 G-AAATGTTTCATTAATGCTGTCAGCCCCgggatccct
i canFam3.chr35            C 0 I 211
s dasNov3.JH582591            31773 25 +    102524 G-AATTGTTTCACTAATATC------------ATCCTT
i dasNov3.JH582591         C 0 C 0

a score=189370.000000
s hg38.chr6_GL000254v2_alt   883203 20 +   4827813 CCTTACACAGgatga---------------------tgatg
s panTro5.chr6             29845976 20 + 175400573 CCTTACACAGgatga---------------------tgatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080340 20 + 173848474 CCTTACACAGgatga---------------------tgatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886961 20 +   6154872 CCTTACACAGgatga---------------------tgatg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596405 20 + 122973662 CGTTACACAGgatga---------------------tgatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076231 41 + 172585720 CCTTACACAGgatgatgatggtgatggtgatgatgatgacg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739076 41 - 170955103 CCTTACACAGgatgatgatggtgatggtgatgatgatgacg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787777 41 -   2996164 CCTTACACAGgatgatgatggtgatggtgatgatgatgacg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     538866 35 +    766320 CCTTACACAGGATAa------tgatggtgatgatgatgacg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28994970 35 -  71996105 CCTTACACAGgatga------tgatggtgatgatgatgacg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171173 35 +    290775 CCTTACACAGGATAa------tgatggtgatgatgatgacg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629919 15 -   3067355 CCTTACACAGGATGA--------------------------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070245 23 + 171630274 CCTTACACAGAatga------------------tgatgatg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217578 23 -    242197 CCTTACACAGAatga------------------tgatgttg
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211926 23 -   1771730 CCTTACACAGAatga------------------tgatgttg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     293873 23 -    457564 CCTTACACAGAatga------------------tgatgttg
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                97584 20 + 123392446 CCATACACAGAATAA---------------------TGATG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     591560 20 +    730504 CCCTACACAGAATAA---------------------TGATG
i proCoq1.NW_012152574v1   C 0 I 112
s otoGar3.GL873550           105467 14 +  18854210 T------CAGAATAA---------------------TGATA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57927273 33 -  94987271 C--TATACAGGAGGA------GAGAAAAGAGGTtgatggtg
i mm10.chr17               C 0 C 0
s canFam3.chr35            26223748 23 +  26524999 CCCTACACAGAACAG------------------tgatcatg
i canFam3.chr35            I 211 C 0
s dasNov3.JH582591            31798 18 +    102524 --CTACATAGAATAA---------------------TATTA
i dasNov3.JH582591         C 0 C 0

a score=66697.000000
s hg38.chr6_GL000254v2_alt   883223  7 +   4827813 ataa---------------tga
s panTro5.chr6             29845996  7 + 175400573 ataa---------------tga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080360  7 + 173848474 ataa---------------tga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886981  4 +   6154872 ---a---------------tga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596425  7 + 122973662 atga---------------ttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076272  7 + 172585720 atga---------------tga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739117  7 - 170955103 atga---------------tga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787818  7 -   2996164 atga---------------tga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     538901  7 +    766320 atga---------------tga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995005  7 -  71996105 atga---------------tga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171208  7 +    290775 atga---------------tga
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chr4             30070268 22 + 171630274 atgatgatgatgatgatggtga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217601  7 -    242197 atga---------------tga
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211949  7 -   1771730 atga---------------tga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     293896  7 -    457564 atga---------------tga
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                97604  7 + 123392446 ATGA---------------TGA
i micMur3.chr6             C 0 I 689
s otoGar3.GL873550           105481  7 +  18854210 ATGA---------------TGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57927306  7 -  94987271 gtgg---------------tgg
i mm10.chr17               C 0 I 9
s canFam3.chr35            26223771  7 +  26524999 atga---------------tga
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            31816  6 +    102524 ATAA---------------TA-
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     591580 112 +    730504 I
e colAng1.NW_012115566v1    2629934  0 -   3067355 C

a score=539361.000000
s hg38.chr6_GL000254v2_alt   883230 56 +   4827813 taacgatgatg---gtgGcta-------------------------------------acatgtatacagtccttaggacgtatcgagcattttcc
s panTro5.chr6             29846003 56 + 175400573 taacgatgatg---gtggcta-------------------------------------acatgtatacagtccttagtacgtatcgagcattctcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080367 56 + 173848474 taacgatgatg---gtggcta-------------------------------------acatgtatacagtccttagtacgtatcgagcattctcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5886985 56 +   6154872 taacgatgatg---gtggcta-------------------------------------acatgtatacagtccttagtacgtatcgagcattttcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596432 56 + 122973662 taatgatgatg---atggtta-------------------------------------acatgtatgcagtccttagtacataccgagcattttcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076279 54 + 172585720 tgatgatgacg---atgGcta-------------------------------------acattta--cggtgcttagtatgtatcaagcattttcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739124 54 - 170955103 tgatgatgacg---atgGcta-------------------------------------acattta--cggtgcttagtatgtatcaagcattttcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787825 54 -   2996164 tgatgatgacg---atgGcta-------------------------------------acattta--cggtgcttagtatgtatcaagcattttcc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     538908 54 +    766320 tgatgatgatg---atgGcta-------------------------------------acattta--cagtccttagtatgtatcaagtattttcc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995012 57 -  71996105 tgatgatgatgaCaatggcta-------------------------------------acattta--cagtccttagtatgtatcaagcattttcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171215 54 +    290775 tgatgatgatg---atgGcta-------------------------------------acattta--cagtacttagtatgtatcaagcattttcc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629934 51 -   3067355 ---TGATGatg---atggcta-------------------------------------acactta--cagtccttagtatgtatcaagcattttcc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070290 56 + 171630274 tgatgatggtg---atgGcta-------------------------------------acatttatgcagtccttagtatgtatcaagcattttcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217608 56 -    242197 tgatgatggtg---atgGcta-------------------------------------acatttatgcagtccttagtatgtatcaagcattttcc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     211956 56 -   1771730 tgatgatgGtg---atggcta-------------------------------------acatttacgcagtccttagtatgtatcaagcattttcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     293903 56 -    457564 tgatgaCagtg---atggcta-------------------------------------acatttatgcagtccttagtatgtatcaagcattttcc
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           105488 50 +  18854210 TAATTAT-------atggcta-------------------------------------acattta--tattgtttactatacctcaggtactttta
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57927322 81 -  94987271 tggtggtggtg---gtggtgatactggggtggtggtggtaggggtcatggtgACAGCTACATTTAAATTGTCCTTACTTTGTGC------------
i mm10.chr17               I 9 C 0
s canFam3.chr35            26223778 55 +  26524999 tgatgatgatg---atAGCTA-------------------------------------ACATTTATAT-TTCCTTACACTGTTCCAGGCATTTTTC
i canFam3.chr35            C 0 I 85
s dasNov3.JH582591            31822 55 +    102524 -AATAGCaaga---gtaacta-------------------------------------gcattaatactgtcctcaccgagcgccaggcactctta
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                97611 689 + 123392446 I
e proCoq1.NW_012152574v1     591580 112 +    730504 I

a score=495943.000000
s hg38.chr6_GL000254v2_alt   883286 47 +   4827813 tgaggaaactatattaccttatttaatcctcaaacaatccaatgagg
s panTro5.chr6             29846059 47 + 175400573 tgaggaaactatatcaccttatttaatcctcaaacaatccaatgagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080423 47 + 173848474 tgaggaaactatatcaccttatttaatcctcaaacaatccaatgagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887041 47 +   6154872 tgaggaaactatatcaccttatttaatcctcaaacaatccaatgagg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596488 47 + 122973662 tgaggaaattatatcaccttatttaatcctcaaacaatccaatgagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076333 47 + 172585720 tagggaacctatatcaccttatttaatcttcaaacaatccaatgagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739178 47 - 170955103 tagggaacctatatcaccttatttaatcttcaaacaatccaatgagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787879 47 -   2996164 tagggaacctatatcaccttatttaatcttcaaacaatccaatgagg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     538962 47 +    766320 tagggaacctatatcaccttatttaatcttcaaacaatccaatgagg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995069 47 -  71996105 tagggaacctatatcgccttatttaatcttcaaacaatccaatgagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171269 47 +    290775 tagggaacctatatcaccttatttaatcttcaaacaatccaatgagg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2629985 47 -   3067355 tagggaacctatatcaccttatttaatcttcaaacaatccaatgagg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070346 43 + 171630274 tcagaaacttgtatcaccttatttaatcctcaa----tccaatgagg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217664 33 -    242197 ttaggaacctgcatcaccttatttaatcctcaa--------------
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212012 33 -   1771730 tcaggaacctgtatcaccttatttaatcctcaa--------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     293959 47 -    457564 tcaggaacctgtatcaccttatttaatcctcaaaccatccaatgaag
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           105538 46 +  18854210 -aaggtatgtatatcaacttatttaatcctcagacaatccaatgaag
i otoGar3.GL873550         C 0 I 11
s mm10.chr17               57927403 46 -  94987271 -GAGGCACACAGATCAGTGTGtttaatcctcagacatttcagcgaat
i mm10.chr17               C 0 I 6
s dasNov3.JH582591            31877 47 +    102524 taagctacctgtatcaactcatttaatcctcacacaacccgtcgggg
i dasNov3.JH582591         C 0 I 7
e micMur3.chr6                97611 689 + 123392446 I
e proCoq1.NW_012152574v1     591580 112 +    730504 I
e canFam3.chr35            26223833 85 +  26524999 I

a score=182562.000000
s hg38.chr6_GL000254v2_alt   883333 15 +   4827813 tgttattatcccca-t
s panTro5.chr6             29846106 15 + 175400573 tgttattatcccca-t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080470 15 + 173848474 tgttattatcccca-t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887088 15 +   6154872 tgttattatcccca-t
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596535 16 + 122973662 tgttattatccccatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076380 15 + 172585720 tgttattatcccca-t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739225 15 - 170955103 tgttattatcccca-t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787926 15 -   2996164 tgttattatcccca-a
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539009 15 +    766320 tgttattatcccca-t
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995116 15 -  71996105 tgttattatcccca-t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171316 15 +    290775 tgttattatcccca-t
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630032 15 -   3067355 tgttattattccca-t
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070389 15 + 171630274 tgctattagcccca-t
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217697 11 -    242197 ----acaatcccca-t
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212045 11 -   1771730 ----acaatcccca-t
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294006 15 -    457564 tgttattagcccca-t
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     591692 15 +    730504 tattattatctcca-t
i proCoq1.NW_012152574v1   I 112 C 0
s otoGar3.GL873550           105595 15 +  18854210 tattattattccca-t
i otoGar3.GL873550         I 11 C 0
s mm10.chr17               57927455 15 -  94987271 tgttatgatctcta-t
i mm10.chr17               I 6 C 0
s dasNov3.JH582591            31931 15 +    102524 tggtatcacccgcg-t
i dasNov3.JH582591         I 7 C 0
e micMur3.chr6                97611 689 + 123392446 I
e canFam3.chr35            26223833 85 +  26524999 I

a score=565486.000000
s hg38.chr6_GL000254v2_alt   883348 38 +   4827813 tttagagataagaaaactgaggcacag-aaaagttatat
s panTro5.chr6             29846121 38 + 175400573 tttagagataagaaaactgaggcacag-aaaagttatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080485 38 + 173848474 tttagagataagaaaactgaggcacag-aaaagttatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887103 38 +   6154872 tttagagataagaaaactgaggcacag-aaaagttacat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596551 39 + 122973662 tttagagataagaaaactgaggcacagaaaaagttatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076395 38 + 172585720 tttagagataagaaaactgaggcagag-aagagttacat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739240 38 - 170955103 tttagagataagaaaactgaggcagag-aagagttacat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787941 38 -   2996164 tttagagataagaaaactgaggcagag-aagagttacat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539024 38 +    766320 tttagagataagaaaactgaggcagag-aagagttacat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995131 38 -  71996105 tttagagataagaaaactgaggcagag-aagagttacat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171331 38 +    290775 tttagagataagaaaactgaggcagag-aagagttacat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630047 38 -   3067355 tttagagataagaaaactgaggcagag-aagagttatat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070404 38 + 171630274 tttagagataagaaaactgaggcacag-aaaagttatat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217708 38 -    242197 tttagagataagaaaactgaggcacag-aaaagttatat
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212056 38 -   1771730 tttagagacaagaaaactgaggcacag-aaaagttatat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294021 38 -    457564 tttagagataagaaaactgaggcacag-aaaagttatat
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     591707 38 +    730504 tttagagataagaaacctgaggcacag-aaaagttatat
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           105610 38 +  18854210 tttagagctaaggaaactgaggcacag-aaaagttacat
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57927470 35 -  94987271 gttagagatgaggaaacaaggacacag----ggtcctgt
i mm10.chr17               C 0 C 0
s canFam3.chr35            26223918 36 +  26524999 tgtatgtataAGGAAAT--AGGCACAG-AAAATTGTCAT
i canFam3.chr35            I 85 I 32
s dasNov3.JH582591            31946 38 +    102524 tttggagatgaggaaatggaggcacag-aaaagctaggc
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                97611 689 + 123392446 I

a score=254668.000000
s hg38.chr6_GL000254v2_alt   883386 29 +   4827813 aacttgcctataaaaaagttatactatta
s panTro5.chr6             29846159 29 + 175400573 aacttgcctataaaaaagttatactatta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080523 29 + 173848474 aacttgcctataaaaaagttatactatta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887141 29 +   6154872 aacttgcctataaaaaagttatactatta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596590 28 + 122973662 aacttgccta-aaaaaagttatactatta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076433 28 + 172585720 aacttgcctg-aaaaaaattatactccta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739278 28 - 170955103 aacttgcctg-aaaaaaattatactccta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2787979 28 -   2996164 aacttgcctg-aaaaaaattatactccta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539062 28 +    766320 aacttgcctg-aaaaaaattatactgcta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995169 28 -  71996105 aacttgcctg-aaaaaaattatactgcta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171369 28 +    290775 aacttgcctg-aaaaaaattatactgcta
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630085 28 -   3067355 aacttgcctg-aaaaaaattatactgcta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070442 27 + 171630274 aacttacct--aaaaaagttatactgcta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           217746 27 -    242197 aacttgcct--aaaaaagttatactgcta
i saiBol1.JH378357         C 0 I 611
s cebCap1.NW_016107755v1     212094 27 -   1771730 aactcatct--aaaaaaattatactgcta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294059 27 -    457564 aacttgcct--aaaaaagttatactgcta
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     591745 24 +    730504 aacttgcaca-----aagttatactgctg
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           105648 24 +  18854210 aagttgctta-----aagttatactgcta
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57927505 11 -  94987271 aactacc----agca--------------
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            31984 23 +    102524 aacctgccta------agttataccgaca
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                97611 689 + 123392446 I
e canFam3.chr35            26223954 32 +  26524999 I

a score=221823.000000
s hg38.chr6_GL000254v2_alt   883415 15 +   4827813 atgagtagcagagcT
s panTro5.chr6             29846188 15 + 175400573 atgagtagcagagct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080552 15 + 173848474 atgagtagcagagct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887170 15 +   6154872 atgagtagcagagct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596618 15 + 122973662 gtaagtagcagagcT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076461 15 + 172585720 gtgagtagcagagcT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739306 15 - 170955103 gtgagtagcagagcT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788007 15 -   2996164 gtgagtagcagagcT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539090 15 +    766320 gtgagtagcagagcT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995197 15 -  71996105 gtgagtagcagagcT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171397 15 +    290775 gtgagtagcagagcT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630113 15 -   3067355 gtgagtagcactgct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070469 15 + 171630274 gtgagtagcaaagcT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           218384 15 -    242197 GTGAGTAGCAGAGCT
i saiBol1.JH378357         I 611 C 0
s cebCap1.NW_016107755v1     212121 15 -   1771730 gtgagtagcagagct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294086 15 -    457564 gtgagtagcagagct
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     591769 15 +    730504 gtgagtagcagaggt
i proCoq1.NW_012152574v1   C 0 I 30
s otoGar3.GL873550           105672 15 +  18854210 gtgagtagaagagct
i otoGar3.GL873550         C 0 I 30
s mm10.chr17               57927516 15 -  94987271 gccagtggtgatgct
i mm10.chr17               C 0 I 8
s dasNov3.JH582591            32007 15 +    102524 gtgagtggcagagct
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                97611 689 + 123392446 I
e canFam3.chr35            26223954 32 +  26524999 I

a score=390682.000000
s hg38.chr6_GL000254v2_alt   883430 37 +   4827813 AAT------------CCATACTCT----TACCAGCCACCCTACACAGTCTCTG
s panTro5.chr6             29846203 37 + 175400573 aat------------ccatactct----taccagccaccctacacagtctctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080567 37 + 173848474 aat------------ccatactct----taccagccaccctacacagtctctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887185 37 +   6154872 aat------------ccatactct----taccagccaccctacacagtctctg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596633 37 + 122973662 AAT------------CCATACTTT----TACCAGCCACCCTACACAGTCTCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076476 37 + 172585720 AAT------------CCATACTTT----TACCAGCCACACTACACAGTCTCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739321 37 - 170955103 AAT------------CCATACTTT----TACCAGCCACACTACACAGTCTCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788022 37 -   2996164 AAT------------CCATACTTT----TACCAGCCACACTACACAGTCTCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539105 37 +    766320 AAT------------CCATACTTT----TACCAGCCACACTACACAGTCTCTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995212 37 -  71996105 AAT------------CCATACTTT----TACCAGCCACACTACACAGTCTCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171412 37 +    290775 AAT------------CCATACTTT----TACCAGCCACACTACACAGTCTCTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630128 49 -   3067355 agtgagtagcacAGCTAATACTTT----TACCAGCCACCCTACACAATCTCTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070484 35 + 171630274 AAC------------CCATACTCT----TACCAGCCACCCT--ACAGTCTCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           218399 35 -    242197 AAC------------CCATACTCT----TACCAGCCACCCT--ACAGTCTCTG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212136 37 -   1771730 aac------------ccacactct----taccagccaccctacacagtctctg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294101 37 -    457564 aac------------ccatactct----taccagccaccctacacagtctctg
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     591814 37 +    730504 agc------------ccacactct----taccagctaccctgccctgtCTCTG
i proCoq1.NW_012152574v1   I 30 I 10
s otoGar3.GL873550           105717 41 +  18854210 agt------------ccatactctcatccactCACTACCCTACACTATCTCTG
i otoGar3.GL873550         I 30 C 0
s mm10.chr17               57927539 34 -  94987271 agc------------ccagggtgt-------ctggcatccatcattgtgctta
i mm10.chr17               I 8 I 8
s canFam3.chr35            26223986 35 +  26524999 agt------------ccctactcc----t--ctaacacctcgcactgcctctG
i canFam3.chr35            I 32 C 0
s dasNov3.JH582591            32022 20 +    102524 --------------gggattcgat----cccgggctgc---------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                97611 689 + 123392446 I

a score=305312.000000
s hg38.chr6_GL000254v2_alt   883467 25 +   4827813 TACATGAGACTGCCTCTCTCTAAGA
s panTro5.chr6             29846240 25 + 175400573 tacatgagactgcctctctCTAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080604 25 + 173848474 tacatgagactgcctctctCTAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887222 25 +   6154872 tacatgagactgcctctctCTAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596670 25 + 122973662 TACATGAGACTGCCTCTCTCTAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076513 25 + 172585720 TACGTGAGACTGCCTCTCTCCAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739358 25 - 170955103 TACGTGAGACTGCCTCTCTCCAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788059 25 -   2996164 TACGTGAGACTGCCTCTCTCCAAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539142 25 +    766320 TACGTgagactgcctctctccaaga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995249 25 -  71996105 TACGTGAGACTGCCTCTCTCCAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171449 25 +    290775 TACGTGAGACTGCCTCTCTCCAAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630177 25 -   3067355 TACGTGAGACCACCTCTCTCCAAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070519 25 + 171630274 TATATGAAACTGCCTCTCTCCAAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           218434 25 -    242197 TACATGAGTTTGCCTCTCTGCAAGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212173 25 -   1771730 tacatgagactgcctctctCCAAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294138 25 -    457564 tacatgagactgcctttctccAAGA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           105758 25 +  18854210 TACATGGAATTGCCTCTCTCTACAA
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               57927581 25 -  94987271 tgccctgagctgcttctGTCCTGGA
i mm10.chr17               I 8 C 0
s canFam3.chr35            26224021 23 +  26524999 CACATAGGTAGGCCTC--TCCAAGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            32042 19 +    102524 ----tggcaccGCCTC--TCCAGGA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                97611 689 + 123392446 I
e proCoq1.NW_012152574v1     591851 10 +    730504 I

a score=636934.000000
s hg38.chr6_GL000254v2_alt   883492 65 +   4827813 GCACCTGCAC---AAATAG---CAGCTAGGCTAATACTTT--GAGTAGT----CTTTTGGCTTCAAATTGAAAGATT
s panTro5.chr6             29846265 65 + 175400573 GCACCTGCAC---AAATAG---CAGCTAGGCTAATACTTT--GAGTAGT----CCTTTGGCTTCAAATTGAAAGATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080629 65 + 173848474 GCACCTGCAC---AAATAG---CAGCTAGGCTAATACTTT--GAGTAGT----CCTTTGGCTTCAAATTGAAAGATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887247 65 +   6154872 GCACCTGCAC---AAATAG---CAGCTAGGCTAATACTTT--GAGTAGT----CCTTTGGCTTCAAATTGAAAGACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596695 65 + 122973662 GCACCTGCAC---AAATAG---CAGCTAGGCTAATACTTT--GAGTAGT----CCTTTGGCTTCAAAGGGAAAGATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076538 64 + 172585720 GCACCTGCAC---AAATAG---CGGCTAGGCTAATACTTT--GAGCAGT----CC-TTAGTTTCAAATTGAAAGATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739383 64 - 170955103 GCACCTGCAC---AAATAG---CGGCTAGGCTAATACTTT--GAGCAGT----CC-TTAGTTTCAAATTGAAAGATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788084 64 -   2996164 GCACCTGCAC---AAATAG---CGGCTAGGCTAATACTTT--GAGCAGT----CC-TTAGTTTCAAATTGAAAGATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539167 64 +    766320 gcacctgcac---aaatag---cggctaggctaatccttt--gagcagt----cc-ttagtttcaaattGAAAGATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995274 64 -  71996105 GCACCTGCAC---AAATAG---CGGCTACGCTAATACTTT--GAGCAGT----CC-TTAGTTTCAAATTGAAAGATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171474 64 +    290775 GCACCTGCAC---AAATAG---CGGCTAGGCTAATACTTT--GAGCAGT----CC-TTAGTTTCAAATTGAAAGATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630202 64 -   3067355 GCACCTGCAC---AAATAG---CGGCTAGGCTAATACTCT--GAGTAGT----CC-TTAGTTTCAAATTGAAAGATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070544 64 + 171630274 GCACCTGCAC---AAACAG---CAACTAGGC---TATTTTCTGAGTAGT----CCTTTGGCTTCAAATTGAAAGATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           218459 67 -    242197 GGACCTGCAC---AAACAG---CAGCTAAGCTAATATTTTCTGAGTAGT----CCTTTGGCTTCAAATTGAAAGACT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212198 67 -   1771730 GCACCTGCAC---AAACAG---CAGCTAGGCTAATATTTTCCGAGTAGT----CCTTTGGCTTCAAATTGAAAGATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294163 67 -    457564 GCACCTGCAC---AAACAG---CAGCTAGGCTAATATTTTCTGAGTAGT----CCTTTGGCTTTAAATTGAAAGATT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     591861 55 +    730504 GCACCTGCAC---AGACAG---CAGCCAGGCTGAGAC-TTCTGAGTAGT----CCTTTGGCTTCCA-----------
i proCoq1.NW_012152574v1   I 10 C 0
s otoGar3.GL873550           105785 56 +  18854210 GTACCCACCC---AATCAG---CAGCCAAATTAAGACTTTCTGAGCATT----TCTTTGGCTTCTA-----------
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               57927606 56 -  94987271 --AGCT-CTC---AGACAG---CAGCGA-GCTAACACTTTCTGAGCAGTCAGGCCTTCAGCGTTCA-----------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26224044 54 +  26524999 GCACCTGCTCAGTAAACAG---CTGCTAGGGTGAGGCTTTCTGAGCAAT----CC------TTCACA----------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            32061 39 +    102524 GCACCG--CC---GGGCAGCCCCAGCACGGCAAAGACCTC--GAGA-------------------------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                97611 689 + 123392446 I

a score=549329.000000
s hg38.chr6_GL000254v2_alt   883557 31 +   4827813 GGTCTATCCAATCTTCAGTTCAAGGTAAATA
s panTro5.chr6             29846330 31 + 175400573 GGTCTATCCAATCTTCAGTTCAAGGTAAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080694 31 + 173848474 GGTCTATCCAATCTTCAGTTCAAGGTAAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887312 31 +   6154872 GGTCTATCCAATCTTCAGTTCAAGGTAAATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596760 31 + 122973662 GGTCTATCCAATCTTCAGTTCAAGGTAAATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076602 31 + 172585720 GGTCTATTCAATCGTCAGTTCAACGTAAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739447 31 - 170955103 GGTCTATTCAATCTTCAGTTCAACGTAAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788148 31 -   2996164 GGTCTATTCAATCTTCAGTTCAACGTAAATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539231 31 +    766320 GGTCTATTCAATCTTCAGTTCAACGTAAATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995338 31 -  71996105 GGTCTATTTAATCTTCAGTTCAACGTAAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171538 31 +    290775 GGTCTATTCAATCTTCAGTTCAACGTAAATA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630266 31 -   3067355 GGTCTATTCAATCTTCAGTTCAACGTAAATA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070608 31 + 171630274 GGTCTATCCAATCTTCAGTTCAAGGTAAATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           218526 31 -    242197 GGTCTATCCAATCTTCAGTTCAAGGTAAATA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212265 31 -   1771730 GGTCTATCCAATCTTCAGTTCAAAGTAAATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294230 31 -    457564 GGTCTAACCAATCTTCAGTTCAAGGTAAATA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                98300 31 + 123392446 GGTCTCTCCAATCTTCAGTTCAAAGTAAATA
i micMur3.chr6             I 689 I 92
s proCoq1.NW_012152574v1     591916 31 +    730504 GGTCTACCCAATCTTCAGTTCAAAGTAAACA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           105841 31 +  18854210 GGTTTTTCCAATCTTCAGTACAAAGTAAACA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57927662 31 -  94987271 GGTCTAGCCAATCCTCAGTTCAAAGTAAAGA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26224098 31 +  26524999 AGTCTATCCAATCCTCAGTTCGAAGTCCACA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            32100 31 +    102524 GGTCTGTCCAACCCTCAGTGCAGAGTGAACA
i dasNov3.JH582591         C 0 C 0

a score=14941.000000
s hg38.chr6_GL000254v2_alt   883588 3 +   4827813 TGG
s panTro5.chr6             29846361 3 + 175400573 TGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080725 3 + 173848474 TGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887343 3 +   6154872 TGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596791 3 + 122973662 TGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076633 3 + 172585720 CGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739478 3 - 170955103 CGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788179 3 -   2996164 CAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539262 3 +    766320 CGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995369 3 -  71996105 CGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171569 3 +    290775 CGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630297 3 -   3067355 CAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070639 3 + 171630274 TGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           218557 3 -    242197 CGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212296 3 -   1771730 CAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294261 3 -    457564 CAG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     591947 3 +    730504 CTA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           105872 3 +  18854210 GTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57927693 3 -  94987271 TTC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26224129 3 +  26524999 CTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            32131 3 +    102524 TGA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                98331 92 + 123392446 I

a score=57847.000000
s hg38.chr6_GL000254v2_alt   883591 10 +   4827813 CAT--CAAAAAA
s panTro5.chr6             29846364 10 + 175400573 CAT--CCAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080728 10 + 173848474 CAT--CCAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887346 10 +   6154872 CAT--CAAAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596794 10 + 122973662 CAT--CAAAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076636 11 + 172585720 CAT-AAAAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739481 12 - 170955103 CATAAAAAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788182 12 -   2996164 CATAAAAAAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539265 12 +    766320 CATAAAAAAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995372 12 -  71996105 CATAAAAAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171572 12 +    290775 CATAAAAAAAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630300 10 -   3067355 CAT--AAAAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070642  9 + 171630274 CAT---CAAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           218560  9 -    242197 CAT---CAAAAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212299  9 -   1771730 CAT---CACAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294264  9 -    457564 CAC---CAAAAA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     591950  9 +    730504 CAG---CAAAAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           105875  9 +  18854210 CAT---CAAAAA
i otoGar3.GL873550         C 0 I 173
s mm10.chr17               57927696 10 -  94987271 CAT--CAGAAAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26224132 10 +  26524999 GAT--CAGAAAA
i canFam3.chr35            C 0 C 0
e micMur3.chr6                98331 92 + 123392446 I
e dasNov3.JH582591            32134  0 +    102524 C

a score=938354.000000
s hg38.chr6_GL000254v2_alt   883601 75 +   4827813 ATCACCCAGAAAGAAAGGGATTAATCT---GCTCAGCACGATGC--GGTCCCCTGCTCAGGTGGTCAGACCCTGTGCTCA
s panTro5.chr6             29846374 75 + 175400573 ATCACCCAGAAAGAAAGGGATTAATCT---GCTCAGCACGATGC--GGTCCCCTGCTCAGGTGGTCAGACCCTGTGCTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080738 75 + 173848474 ATCACCCAGAAAGAAAGGGATTAATCT---GCTCAGCACGATGC--GGTCCCCTGCTCAGGTGGTCAGACCCTGTGCTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887356 75 +   6154872 ATTACCCAGAAAGAAAGGGATTAATCT---GCTCAGCATGATGC--AGTCCCCTGCTCAGGTGGTCAGACCCTATGTTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596804 75 + 122973662 ATCACCCGGATGGAAAGGGATTAATTT---GCTCAGCATGATGC--GGTCCCCTGCTCAGGTCGTCAGACCCTGTGCTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076647 75 + 172585720 ATCACCCAGATGGAAAGGGATTAATCT---GCTCAGCATGATGC--GGTCCCCTGCCCAGGTCGTCATACTCTGTACTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739493 75 - 170955103 ATCACCCAGATGGAAAGGGATTAATCT---GCTCAGCATGATGC--GGTCCCCTGCCCAGGTCGTCATACTCTGTACTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788194 75 -   2996164 ATCACCCAGATGGAAAGGGATTAATCT---GCTCAGCATGATGC--GGTCCCCTGCCCAGGTCGTCATACTCTGTACTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539277 75 +    766320 ATCACCCAGATGGAAAGGGATTAATCT---GCTCAGCATGATGC--GGTCCCCTGCCCAGGTCGTCATACTCTGTGCTCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995384 75 -  71996105 ATCACCCAGATGGAAAGGGATTAATCT---GCTCAGCACGATGC--GGTCCCCTGCCCAGGTCGTCATACTCTGTGCTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171584 75 +    290775 ATCACCCAGATGGAAAGGGATTAATCT---GCTCAGCATGATGC--GGTCCCCTGCCCAGGTCGTCATACTCTGTGCTCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630310 75 -   3067355 ATCACCCAGATGGAAAGGGATTAATCT---GCTCAGCATGATGC--GGTCCCCTGCCCAGGTCATCATACTCTGTGCTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30070651 78 + 171630274 ATCACCCAGATAAAAAGGGATTAATACTAGACTCAGCATGATGT--TGTCCCCTGACCAGATCATCATACTCTCTGCTCA
i calJac3.chr4             C 0 M 602
s saiBol1.JH378357           218569 75 -    242197 ATCACCCAGATGGAAAGGGATTAATCT---GCTCAGCGTGATGT--TGTCCCCTGCCCAGATTATCATACTCTCTGCTCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212308 75 -   1771730 ATCACCCAGATGGAAAGGGATTAATCT---GCTCAGCGTGATGT--TGTCCCCTGCCCAGATCATCATACTCTCTGCTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294273 75 -    457564 ATCACCCAGATGGAAAGGAATTAATCT---GCTCAGCATGATGT--TGTCCCCTGCCCAGATCATCATACTCTCTGCTCA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     591959 75 +    730504 ATCACCCAGGTAGGAAGGGATTCATCT---GCTCAGCATGCTGC--CCTCCCCTGCCCACTTCCTCACATTGCCTCTTCA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           106057 77 +  18854210 aTCAACCAGAAGGGAAAGAATTCATCT---GCTCAGCATGCTGCTGCCATCCCTGCCCAGATCTTCATACTCTCTGCTCA
i otoGar3.GL873550         I 173 C 0
s mm10.chr17               57927706 61 -  94987271 -TCACCATATTGGGAAGGGATTAATCT---GCTCAGCATGATAT--TATCC-------------TCAGATTCTCAGCTCA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26224142 72 +  26524999 -ACATCCAGATGGAAAGG-ATTCATCT---GCCCTGCGTGGTGC--TCTCTGC-ACCCAGATCTTCATACTCTCTGCTGC
i canFam3.chr35            C 0 C 0
e micMur3.chr6                98331 92 + 123392446 I
e dasNov3.JH582591            32134  0 +    102524 C

a score=50630.000000
s hg38.chr6_GL000254v2_alt   883676 5 +   4827813 CGCCA
s panTro5.chr6             29846449 5 + 175400573 CGCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080813 5 + 173848474 CGCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887431 5 +   6154872 CGCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596879 5 + 122973662 TGCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076722 5 + 172585720 CGCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739568 5 - 170955103 CGCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788269 5 -   2996164 CGCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539352 5 +    766320 CGCCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995459 5 -  71996105 CGCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171659 5 +    290775 CGCCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630385 5 -   3067355 CGCCA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           218644 5 -    242197 AGCCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212383 5 -   1771730 AGCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294348 5 -    457564 AGCCA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     592034 5 +    730504 CTCCC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           106134 5 +  18854210 CTCCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57927767 4 -  94987271 -CTCA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26224214 5 +  26524999 CTCCA
i canFam3.chr35            C 0 C 0
e micMur3.chr6                98331 92 + 123392446 I
e dasNov3.JH582591            32134 0 +    102524 C
e calJac3.chr4             30070729 602 + 171630274 M

a score=456908.000000
s hg38.chr6_GL000254v2_alt   883681 38 +   4827813 GGTCACTACCACTAACACGCCTAACCACTGGGGGCACC
s panTro5.chr6             29846454 38 + 175400573 GGTCACTACCACTAACACGCCTAACCACTGGGGGCACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080818 38 + 173848474 GGTCACTACCACTAACACGCCTAACCACTGGGGGCACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887436 37 +   6154872 GGTCACTACCACTAACACACCTAACCACT-GGGGCACC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596884 38 + 122973662 GGTCACTACCACTAACATGCCTAACCACTGGGGGCACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076727 38 + 172585720 GGTCACTACCACAAACACACCTAACCACTGGGGGCACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739573 38 - 170955103 GGTCACTACCACAAACACACCTAACCACTGGGGGCACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788274 38 -   2996164 GGTCACTACCACAAACACACCTAACCACTGGGGGCACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539357 38 +    766320 GGTCACTACCACAAACGTGCCTAACCACTGGGGGCACC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995464 38 -  71996105 GGTCACTACCACAAACACGCCTAACCACCGGGGGCACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171664 38 +    290775 GGTCACTACCACAAACGCGCCTAACCACTGGGGGCACC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630390 38 -   3067355 GGTCGCCACCACAAACACGCCTAACCACCGGGGGCACC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           218649 38 -    242197 GGTCACTACCACTAACACACCTAACCACTGGGGGCACC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212388 38 -   1771730 CATCACTACCACTAATACACCTAACCACTGGGGGCACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294353 35 -    457564 GGTCACTACC---AACACACCTAACCACTGGGGGCACC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                98423 38 + 123392446 GGTCACTACCACTGAAACGCCCAGCCACTGGGGGCACC
i micMur3.chr6             I 92 I 37
s proCoq1.NW_012152574v1     592039 38 +    730504 GGTCACTACCACTGAAACACCTAACCACTGGGGGCACC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           106139 38 +  18854210 GGTCAGTACCACTAAAACACCTAGCCACTAGGGACACC
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               57927771 29 -  94987271 GGACAGTAC---------AGCTAGCCAAGAGGAGTAAC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26224219 22 +  26524999 AGTCAGTAA-ACCAACATGCTTA---------------
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            32134  0 +    102524 C
e calJac3.chr4             30070729 602 + 171630274 M

a score=109103.000000
s hg38.chr6_GL000254v2_alt   883719 15 +   4827813 ACTGCTCCTGCCACC
s panTro5.chr6             29846492 15 + 175400573 ACTGCTCCTGCCACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080856 15 + 173848474 ACTGCTCCTGCCACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887473 15 +   6154872 ACTGCTCCTGCCACC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596922 15 + 122973662 ACTGCTCCTGCCACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076765 15 + 172585720 ATTGCCCCTGCCACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739611 15 - 170955103 GTTGCTCCTGCCACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788312 15 -   2996164 ATTGCTCCTGCCACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539395 15 +    766320 ATTGCTCCTGCCACC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995502 15 -  71996105 ATTGCTCCTGCCACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171702 15 +    290775 ATTGCTCCTGCCACC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630428 15 -   3067355 ATTGCTCCTGCCACC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           218687 15 -    242197 ACTGCTCCCGCCACC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212426 15 -   1771730 ACTGCTCCCACCACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294388 15 -    457564 ACTGCTCCTGACACC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     592077 13 +    730504 TCTGCCCCCGTGA--
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           106179 13 +  18854210 TCTCACCCTGGGG--
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               57927800  1 -  94987271 --------------A
i mm10.chr17               C 0 C 0
s canFam3.chr35            26224241  2 +  26524999 -------------CC
i canFam3.chr35            C 0 C 0
e micMur3.chr6                98461 37 + 123392446 I
e dasNov3.JH582591            32134  0 +    102524 C
e calJac3.chr4             30070729 602 + 171630274 M

a score=138256.000000
s hg38.chr6_GL000254v2_alt   883734 25 +   4827813 CCAAGAGTAA----AGAAGAGTAGAATGC
s panTro5.chr6             29846507 25 + 175400573 CCAAGAGTAA----AGAAGAGTAGAATGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080871 25 + 173848474 CCAAGAGTAA----AGAAGAGTAGAATGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887488 25 +   6154872 CCAAGAGTAA----AGAAGAGTAGAATGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596937 25 + 122973662 CCAAGAGTAA----AGAAGAGTAGAATGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076780 25 + 172585720 CCAAGAGTAG----AGAAGAGTAGAATGC
i rheMac8.chr4             C 0 I 36
s macFas5.chr4             29739626 25 - 170955103 CCAAGAGTAG----AGAAGAGTAGAATGC
i macFas5.chr4             C 0 I 36
s macNem1.NW_012011356v1    2788327 25 -   2996164 CCAAGAGTAG----AGAAGAGTAGAATGC
i macNem1.NW_012011356v1   C 0 I 36
s cerAty1.NW_012002711v1     539410 25 +    766320 CCAAGAGTAG----AGAAGAGTAGAATGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995517 25 -  71996105 CCAAGAGTAG----AGAAGAGTAGAATGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171717 25 +    290775 CCAAGAGTAG----AGAAGAGTAGAATGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630443 25 -   3067355 CCAAGAGTAG----AGAAGAGTAGAATGC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           218702 29 -    242197 CCATGAGTAGAATTAGGAAAAAACAATGC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212441 29 -   1771730 CCATGAGTAGAATTAGGCAAAAACAATGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294403 29 -    457564 CCATGAGTAGAATTAGGAAAAAACAATGC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     592090 18 +    730504 CTGAAATTAT----GAAAAAAC-------
i proCoq1.NW_012152574v1   C 0 I 5
s otoGar3.GL873550           106192 18 +  18854210 CCAAAATTAT----GAAAAAGC-------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57927801 23 -  94987271 CTGAAAATCA----TGAAAAACCACTC--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26224243 10 +  26524999 CAAAAAATCT-------------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            32134 12 +    102524 CCAAGAACAT----TC-------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                98461 37 + 123392446 I
e calJac3.chr4             30070729 602 + 171630274 M

a score=412135.000000
s hg38.chr6_GL000254v2_alt   883759 31 +   4827813 TTCCCCCTTGAGTCAGTAAAGA-TACAGTTAT
s panTro5.chr6             29846532 31 + 175400573 TTCCCCCTTGAGTCAGTAAAGA-TACAGTTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080896 31 + 173848474 TTCCCCCTTGAGTCAGTAAAGA-TACAGTTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887513 31 +   6154872 TTCCCCCTTGAGTCAGTAAAGA-TACAGTTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596962 31 + 122973662 TTCCCCCTTGAGTCAGTAAAGA-TACAGTTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076841 31 + 172585720 TTCCCCCTTGAGTCAGTAAAGA-TACAGTTAT
i rheMac8.chr4             I 36 C 0
s macFas5.chr4             29739687 31 - 170955103 TTCCCCCTTGAGTCAGTAAAGA-TACAGTTAT
i macFas5.chr4             I 36 C 0
s macNem1.NW_012011356v1    2788388 31 -   2996164 TTCCCCCTTGAGTCAGTAAAGA-TACAGTTAT
i macNem1.NW_012011356v1   I 36 C 0
s cerAty1.NW_012002711v1     539435 31 +    766320 TTCTCCCTTGAGTCAGTAAAGA-TACAGTTAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995542 31 -  71996105 TTCCCCCTTGAGTCAGTAAAGA-TACCGTTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171742 31 +    290775 TTCTCCCTTGAGTCAGTAAAGA-TACAGTTAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630468 31 -   3067355 TTCCCCCTTGAGTCAGTAAAGA-TACAGTTAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           218731 28 -    242197 T---CTCTTGAGTCAGTAAAGA-TACAGTTAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212470 31 -   1771730 TTCCCTCTTGAGTCAGTAAAGA-TACAGTTAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294432 31 -    457564 TTCCCTCTTGAGTCGGTAAAGA-TACAGTTAT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                98498 31 + 123392446 TTCTCCCTTGAGTCAGCAGAGA-TATGGTTAT
i micMur3.chr6             I 37 C 0
s proCoq1.NW_012152574v1     592113 31 +    730504 TTCTCCCTTGAGTCAACAGAGA-TATGGTTAT
i proCoq1.NW_012152574v1   I 5 C 0
s otoGar3.GL873550           106210  1 +  18854210 -------------------------------C
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57927824 32 -  94987271 TTCCCCTTTGAGTCAGCAAAGATTATGGTTAT
i mm10.chr17               C 0 I 99
s canFam3.chr35            26224253 31 +  26524999 TTCCCCCTTGGGCCAGCACAGA-TACAGCTGC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            32146 31 +    102524 TTCCCCCTTGGTCCAGTGAAGG-CAGGATTAC
i dasNov3.JH582591         C 0 C 0
e calJac3.chr4             30070729 602 + 171630274 M

a score=1218702.000000
s hg38.chr6_GL000254v2_alt   883790  97 +   4827813 AGATTGTCAAAGAGACACTCTACTCTGCAGCTTAAGGAAATCTG---AACAA---TA--AAGACCCCTCAACCCACAGCAATTAGTTAATCAACCAAGTGCAAAT
s panTro5.chr6             29846563  97 + 175400573 AGATTGTCGAAGAGACACTCTACTCTGCAGCTTAAGGAAATCTG---AACAA---TA--AAGACCCCTCAACCCACAGCAATTAGTTAATCAACCAAGTGCAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30080927  97 + 173848474 AGATTGTCGAAGAGACACTCTACTCTGCAGCTTAAGGAAATCTG---AACAA---TA--AAGACCCCTCAACCCACAGCAATTAGTTAATCAACCAAGTGCAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887544  97 +   6154872 AGATTGTCGAAGAGACACTCTACTCTGCAGCTTAAGGAAATCTG---AACAA---TA--AAGACCCCTCAACCCACAGCAATTAGTTAATCAACCAAGTGCAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74596993  92 + 122973662 AGATTGTCAAACAGAA-----ACTCCGCAGCTTAAGGAAATCTG---AACAA---TA--AAGACCCCTCAACCCATAGCAATTAGTTAATCAACCAAGTGCAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076872  97 + 172585720 AGATTGTCAAACAGAAACTCTACTCTGCAGCTTAAGGAAATCTG---AACAA---TA--AAGACCCCTCAACCCATAGCAATTAGTTAACCAGCCAAGTGCAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739718  97 - 170955103 AGATTGTCAAACAGAAACTCTACTCTGCAGCTTAAGGAAATCTG---AACAA---TA--AAGACCCCTCAACCCATAGCAATTAGTTAACCAGCCAAGTGCAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788419  97 -   2996164 AGATTGTCAAACAGAAACTCTACTCTGCAGCTTAAGGAAATCTG---AACAA---TA--AAGACCCCTCAACCCATAGCAATTAGTTAACCAGCCAAGTGCAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539466  97 +    766320 AGATTGTCAAACAGAAACTCTACTCTGCAGCTTAAGGAAATCTG---AACAA---TA--AAGACCCCTCAACCCATAGCAATTAGTTAACCAGCCAAGTGCAAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995573  93 -  71996105 AGATTGTCAAACAGAAACTCTACTCTGCAGCTTAAGGAAATCTG---AACAA---TA--AAGACCCCTCAACCCATAGCAA----TTAATCAGCCAAGTGCAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171773  97 +    290775 AGATTGTCAAACAGAAACTCTATTCTGCAGCTTAAGGAAATCTG---AACAA---TA--AAGACCCCTCAACCCATAGCAATTAGTTAACCAGCCAAGTGCAAAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630499  97 -   3067355 AGATTGTCAAACAGAAACTCTACTCCACAGCTTAAGGAAATCTG---AACAA---TA--AAGACCCCTCAACCCATAGCAATTAGTTAATCAGCCAAGTGCAAAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           218759  97 -    242197 AGATTGTCAAAGAGAAACTTTACTATGTAACTCAAGGAAATCTG---AACAA---TA--AAGACCCCTCAACCCGTAACAATTAGTTAATCAACCAAGTGCATTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212501  93 -   1771730 AGATTGTCAAAGAGAAACTTTACTATGTAGCTCAAGGAAATCTG---AACAA---TA--AAGACCCCTCAACCCATAACAA----TTAATCAACCAAGTGCAATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294463  97 -    457564 AGATTGTCAAAGAGAAACTTTACTATGTAGCTCAAGGAAATCTG---AACAA---TA--AAGACCCCTCAACCCATAACAATTAGTTAATCAACCAAGTGCAATT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                98529  97 + 123392446 AAATTTTCAAAGAGAAATTTTACTATGCAACTTAAGGAAAACTA---AATAA---CA--AAAATCCCACAACCCATAGAAATTAATGAATTAATCAAGTGCAAAT
i micMur3.chr6             C 0 I 97
s proCoq1.NW_012152574v1     592144  97 +    730504 AAATTTTCGAAGAGAAATTTTACTATGCAACTTAAGGAAAACTG---AACAA---CA--AAAATCCCACAACCCATACAAATTAACGAATTAACCAAGTGCAAAT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           106211 100 +  18854210 AAATTTTCAAAGAGAAATTTGATTATGCAAGTTAAGGAAAACTGAACAACAA---CA--AAAATCCCATAACCCACAAAAATTAGTGAATTAACCAACTGGAAAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26224284 100 +  26524999 AGGTTTTCAGGCGGAAATATTACTAAGCATCTCAAGGAAAAGTG---AACAACAGCA--AAAATCCCACAACCCACAGAAATTAGTCAAGTAATCAAATGCAACT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            32177  95 +    102524 AAATTTTCAAAAGCAA----CACTGTAGAGCCCAAGGAAAACCG---AATAA---CAACAGGACTTCACAACGCACAGAAATGAACAACTGAACCAAGTGCCAGT
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57927856  99 -  94987271 I
e calJac3.chr4             30070729 602 + 171630274 M

a score=86191.000000
s hg38.chr6_GL000254v2_alt   883887 37 +   4827813 TTATA-------CCTAATT---TTTTTAACAGCC------TTGTCTGGCTCTC
s panTro5.chr6             29846660 37 + 175400573 TTATA-------CCTAATT---TTTTTAACAGCC------TTGTCTGGCTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30081024 37 + 173848474 TTATA-------CCTAATT---TTTTTAACAGCC------TTGTCTGGCTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887641 37 +   6154872 TTATA-------CCTAATT---TTTTTAACAGCC------TTGTCTGGCTCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74597085 37 + 122973662 TTATA-------CCTAATT---TTTTTAACAGCC------TTGTCTGGCTCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076969 15 + 172585720 --------------------------------CC------TCGTCTGGCTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739815 15 - 170955103 --------------------------------CC------TCGTCTGGCTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788516 15 -   2996164 --------------------------------CC------TCGTCTGGCTCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539563 15 +    766320 --------------------------------CC------TCGTCTGGCTCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995666 15 -  71996105 --------------------------------CC------TCGTCTGGCTCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171870 15 +    290775 --------------------------------CC------TCGTCTGGCTCTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630596 15 -   3067355 --------------------------------CC------TCGTCTGGCTCTC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           218856 36 -    242197 -TATA-------CCTAATT---ATTTTAACAGCC------TTGTCTTGCTCTC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212594 36 -   1771730 -TATA-------CCTAATT---ATTTTAACAGCC------TTGTCTGGCTCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294560 36 -    457564 -TACA-------CCTAATT---ATTTTAACAGCC------TTGTCTGGCTCTC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     592241 39 +    730504 GTATGAT-----CCTAATT---TTTTCAACAGCC------CTGTCTGGCTGTC
i proCoq1.NW_012152574v1   C 0 I 9
s otoGar3.GL873550           106311 36 +  18854210 GTATGAT-----CCTAA-T---TTTTCAACATCC------CTGTCTAGCTA--
i otoGar3.GL873550         C 0 I 6
s canFam3.chr35            26224384 44 +  26524999 ------CGATGACCCTCAT---TTTATAACAGCCCGCTGGTTGTCTCTATGTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            32272 35 +    102524 -----------TTCTGATCTAATTTTTAACAGCC------ACG-CTGGCGCCC
i dasNov3.JH582591         C 0 I 411
e micMur3.chr6                98626 97 + 123392446 I
e mm10.chr17               57927856 99 -  94987271 I
e calJac3.chr4             30070729 602 + 171630274 M

a score=76912.000000
s hg38.chr6_GL000254v2_alt   883924 6 +   4827813 AAGAAT
s panTro5.chr6             29846697 6 + 175400573 AAGAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30081061 6 + 173848474 AAGAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887678 6 +   6154872 AAGAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74597122 6 + 122973662 AAGAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076984 6 + 172585720 AAGAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739830 6 - 170955103 AAGAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788531 6 -   2996164 AAGAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539578 6 +    766320 AAGAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995681 6 -  71996105 AAGAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171885 6 +    290775 AAGAAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630611 6 -   3067355 AAGAAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           218892 6 -    242197 AAGAAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212630 6 -   1771730 AAGAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294596 6 -    457564 AAGAAT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     592289 6 +    730504 GAGAAC
i proCoq1.NW_012152574v1   I 9 C 0
s otoGar3.GL873550           106353 6 +  18854210 GAGAAC
i otoGar3.GL873550         I 6 C 0
s canFam3.chr35            26224428 6 +  26524999 AGGGAC
i canFam3.chr35            C 0 I 2
s dasNov3.JH582591            32718 6 +    102524 AAGAGC
i dasNov3.JH582591         I 411 C 0
e micMur3.chr6                98626 97 + 123392446 I
e mm10.chr17               57927856 99 -  94987271 I
e calJac3.chr4             30070729 602 + 171630274 M

a score=454128.000000
s hg38.chr6_GL000254v2_alt   883930 41 +   4827813 GGATGCTTGACAGTGGGCTAAAATGTA-TATCTTG-AGGTAGC
s panTro5.chr6             29846703 41 + 175400573 GGATGCTTGACAGTGGGCTAAAATGTA-TATCTTG-AGGTAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30081067 41 + 173848474 GGATGCTTGACAGTGGGCTAAAATGTA-TATCTTG-AGGTAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887684 41 +   6154872 GGATGCTTGACAGTGGGCTAAAATGTA-TATCTTG-AGGTAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74597128 41 + 122973662 GGATGCTTGACAGTGGGCTAAAATGTA-TATCTTG-AGGTAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30076990 41 + 172585720 GAATGCTTGACAGTGGGCTAGAATGTG-TATCTTG-AGGTAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739836 41 - 170955103 GAATGCTTGACAGTGGGCTAGAATGTG-TATCTTG-AGGTAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788537 41 -   2996164 GAATGCTTGACAGTGGGCTAGAATGTG-TATCTTG-AGGTAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539584 41 +    766320 GAATGCTTGACAGTGGGCTAGAATGTG-TATGTTG-AGGTAGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995687 41 -  71996105 GAATGCTCGACAGTGGGCTAGAATGTG-TATGTTG-AGGTAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171891 41 +    290775 GAATGCTTGACAGTGGGCTAGAATGTG-TATGTTG-AGGTAGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630617 41 -   3067355 GAATGCTTGACAGTGGGCTAGAATGTG-TATCTTG-AGGTAGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30071333 42 + 171630274 GGATGCTGTATAGTGAGCTCAAATGTATTATGCTG-AGGTAGC
i calJac3.chr4             M 602 C 0
s saiBol1.JH378357           218898 42 -    242197 GGATGCTTGATAGTGAGCTAAAATGTA-TATACTGAAGGCAGC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212636 41 -   1771730 GGATGCTTAATAGTGAGCTAAAATGTA-TATAATG-AGGCAGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294602 41 -    457564 GGATGCTTGATAGTGAGCTAAAATGTA-TATGCTG-AGGTAGC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     592295 37 +    730504 GGATGCTGAACAGCAATCTAAAATGTA-CACCCTG-AGC----
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           106359 36 +  18854210 AGATGTTGAACTGTGATC-AAAATGTA-CATCCTG-AGC----
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26224436 41 +  26524999 GGATGCCCGACTGCGACCTAAACTTTG-TATCTCG-AGGCAGC
i canFam3.chr35            I 2 C 0
s dasNov3.JH582591            32724 40 +    102524 GGATGCCCAACC-TGATCCTGAATGTG-CACCTGC-AGGTGGC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                98626 97 + 123392446 I
e mm10.chr17               57927856 99 -  94987271 I

a score=1741653.000000
s hg38.chr6_GL000254v2_alt   883971 139 +   4827813 TTTTTAG---TTTGTACTGGTCCTAGGTCTGAT------GGGATCTCTACCCCAA----TCAAG----ATTTCCTCACAATCTTA---TCTCCAGG--ATGCCACCTCCCACATTCCCCTCTAGCCCACAGCT---ACATT-TCTCTAAAACCACTCTAACCCAC
s panTro5.chr6             29846744 139 + 175400573 TTTTCAG---TTTGTATTGGTCCTAGGTCTGAT------GGGATCTCTACCCCAA----TCAAG----ATTTCCTCACAATCTTA---TCTCCAGG--ATGCCACCTCCCACATTCCCCTCTAGCCCACAGCT---ACATT-TCTCTAAAGCCACTCTAACCCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30081108 139 + 173848474 TTTTCAG---TTTGTATTGGTCCTAGGTCTGAT------GGGATCTCTACCCCAA----TCAAG----ATTTCCTCACAATCTTA---TCTCCAGG--ATGCTACCTCCCACATTCCCCTCTAGCCCACAGCT---ACATT-TCTCTAAAGCCACTCTAACCCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887725 139 +   6154872 TTTTTAG---TTTGTATTGGCCCTAGGTCTGAT------GGGATCTCTACCCCAA----TCAAG----ATTTCCTCACAATCTTA---TCTCCAGG--ATGCCACCTCCCACATTCCCCTCTAGCCCACAGCT---ACATT-TCTCTAAAACCACTCTAACCCAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74597169 142 + 122973662 TTTTTAGCTTTTTGTATCGGTCCTAGGTCTGAT------GGGATCTCTACCCCAA----TCAGG----ATTTCCTCACAATCTTA---TCTCCAGG--ATGCCACCTCCCACATTCCCCCCTAGCCCACAGCT---ACATT-TCTCTAAAACCACTCTAACCCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30077031 138 + 172585720 TTTTTAG---TTTGTATTGGTCCTAGGTCTGAT------GGGATCTCTACCCCAA----TAGG-----ATTTCCTCACAATCTTA---TCTCCAGG--ATGCCACCTCCCACATTCCCGTCTATCCCACAGTT---ACATT-TCTCTAAAACCACCCTAACCTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29739877 138 - 170955103 TTTTTAG---TTTGTATTGGTCCTAGGTCTGAT------GAGATCTCTACCCCAA----TAGG-----ATTTCCTCACAATCTTA---TCTCCAGG--ATGCCACCTCCCACATTCCCGTCTATCCCACAGTT---ACATT-TCTCTAAAACCACCCTAACCTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788578 138 -   2996164 TTTTTAG---TTTGTATTGGTCCTAGGTCTGAT------GGGATCTCTACCCCAA----TAGG-----ATTTCCTCACAATCTTA---TCTCCAGG--ATGCCACCTCCCACATTCCCGTCTATCCCACAGTT---ACATT-TCTCTAAAACCACCCTGACCTAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539625 143 +    766320 TTTTTAG---TTTGTATTGGTCCTAGGTCTGAT------GGGATCTCTACCCCAA----TCAGGATTTATTTCCTCACAATCTAA---TCTCCAGG--ATGCCACCTCCCACATTCCCCTCTATCCCACAGCT---ACATT-TCTCTAAAACCACCTTAACCTAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995728 143 -  71996105 TTTTTAG---TTTGTATTGGTCCTAGGTCTGAT------GGGATCTCTACCCCAA----TCAGAATTTATTTCCTCACAATCTTA---TCTCCAGG--ATGCCACCTCCCACATTCCCCTCTATCCCACAGCT---ACATT-TCTCTAAAACCACCCTAACCTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     171932 143 +    290775 TTTTTAG---TTTGTATTGGTCCTAGGTCTGAT------GGGATCTCTACCCCAA----TCAGGATTTATTTCCTCACAATCTAA---TCTCCAGG--ATGCCACCTCCCACATTCCCCTCTATCCCACAGCT---ACATT-TCTCTAAAACCACCTTAACCTAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630658 139 -   3067355 TTTTTAG---TTTGTATTGGTCCTAGGTCTGAT------GGGATCTCTACCCCAA----TCAGG----ATTTCCTCAAAATCTTA---ACTCCAGG--ATGCCACCTCCCACATTCCCCTCTATCCCACGGCT---ACATT-TCTCTAAAACCACCCTAACCTAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30071375 135 + 171630274 TTTT-AG---TTTGTATTGGTCCTACATCTGAC------GGGATCTCTACCCCAA----TCAGG----ATTTACTCACAATCTT----TTTCCAGG--ATGCCACC-CACACATTCCACTCTAGCCCACAGTT---ACATT-TCTCTAAAATCACTCTAG-CCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           218940 144 -    242197 TTTT-AG---TTTGTACTGGTCCTAGATCTGACCTGATTGGGATCTCTACCCCAA----TCAGA----ATTTACTCACAATCTTA---TATCCAGG--CTGCCACCTCCCACATTCCACTCTAGCCCACAGCT---ACATT-TCTCTAAAATCACTCTAGCCCAC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212677 138 -   1771730 TTTT-AG---TTTGTATTGGTCCTAGATCTGAT------GGGATCTCTAACCTAA----TCAGG----ATTTACTCACAATCTTA---TATCCAGG--CTGCCACCTCCCACATTCCACTCTAAACCACAGCT---ACATT-TCTCTAAAATCGCTCTAGGCCAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294643 138 -    457564 TTTT-AG---TTTGTACTGGTCCTAGATCTGAC------AAGATCTCTACCCCAA----TCAGG----ATTTACTCACAATCTTA---TCTCCAGG--CTGCCACCTCCCACATTCCACTCTAGCCCACAGCA---ACATT-TCTCTAAAATCACTCTAGCCCAC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                98723 135 + 123392446 TTTTTAG---TTTGTATCGGACCCAGGTATGAT------GGAAGCTCTACCCCAA----TCAGG----AGTTACTCACAACCGTA---TCACCGGAT-ACGCCCCCTCTCAC-CTCCGTTCTAACCCACTGCT---ATAGT-TCTCCAAAGCCACT----CTCAC
i micMur3.chr6             I 97 C 0
s proCoq1.NW_012152574v1     592332 135 +    730504 TGTTTAG---TTTGTGTTGGACCCAGGTCTGAT------GGAAGCTCTACCCCAA----TCAGG----AGTTACTCACAGCTGTA---TCTCCAGAT-ACGCCGCCTCTCAC-CTCCCCTCTAGCCCACTGCT---GTAGT-TCTCCAAAGCCACT----CTTAC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           106395 139 +  18854210 TTTTCAG---TTTGTACTGGGCCCAGGTCTAAT------GGGATCTCTGCTCCAA----TCAGG----AGTTACACACAATGGTA---TCTTCAGAT-ATGCCACCTCTAAC-CTCCCCACTTACCCGACACT---ATTGT-TCTCCAAAACCACTCTAACTCAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26224477 148 +  26524999 TTTCGAT---TTTGTATTGTACCAAGATTTGAT------GGGACCTCTATCCCAACTTGTGAGA----ACTGCGACAGAACCTCA---TTCCCAGGTGAGGCCACCTCCCAGCTGTCCCTCTAGCCCAGAGCTGCCATATT-TCCTCAAAACTACTCCAACCCAC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            32764 126 +    102524 --CCTGG---ACTGTGTTCA-CCCGCACCTGCT------GGGATCTCGATCCCAA----TTGGA----ACATTCTCCCAATCTCACCTTCTCTGTA--CTGCTACCTCC-------------ATCCCAGAGCT---TCATTCTCCGTGAGACCAC-CTGATCTAC
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57927856  99 -  94987271 I

a score=2304594.000000
s hg38.chr6_GL000254v2_alt   884110 179 +   4827813 --TCTCCATTTCCAC--ATATTGCCCCTAAAGA-TGTTTTCTCTAAACTagggtttctcattctctgcac----tattaacattttgagcaagataattctttgttgccagggg-----ctgt-------gctttgtaggatatttagaatcatctttggcttctacacattagatatcaggagcatgta-tccctcccca
s panTro5.chr6             29846883 179 + 175400573 --TCTCCATTTCCAC--ATATTGCCCCTAAAGA-TGTTTTCTCTAAACTagggtttctcattctctgcac----tattaacattttgagcaagataattctttgttgtcagggg-----ctgt-------gctttgtaggatatttagaatcatctttggcttctacacattagatatcaggagcatgta-tccctcccca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30081247 179 + 173848474 --TCTCCATTTCCAC--ATATTGCCCCTAAAGA-TGTTTTCTCTAAACTagggtttctcattctctgcac----tattaacattttgagcaagataattctttgttgtcagggg-----ctgt-------gctttgtaggatatttagaatcatctttggcttctacacattagatatcaggagcatgta-tccctcccca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5887864 179 +   6154872 --TCTCCATTTCCAC--ATATTGCCCCTAAAGA-TGTTTTCTCTAAACTagggtttctcattctctgcac----tattaacattttgagcaagataattctttgttgtcagggg-----ctgt-------gctttgtaggatatttagaatcatctttggcttctacacattagatgtcaggagcatgta-tccctcccca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74597311 179 + 122973662 --TCTCCATTTCCAC--ATATGGCCCCTAAAGA-TGTTTTCTCTAAACTagggtttctcagtctctgcac----tattaacattctgagcaagataattctttgttgtcggagg-----ctgt-------gctttgtaggatatttagaataatctttggcttctacacattagacatcaggagcacgta-tccctcccca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30077169 183 + 172585720 --TCTCCAATTCCAC--ATATGGCCCCTAAAGA-TGTTTTCTCTAAACTagggtttctcactctctgcactatttattaacattttgagcaagataattctttgttgtcagggg-----ctgt-------gctttgtaggatgtttagaatcatctttggcttcaacacattagatatcaggagcatgta-tccctcccca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740015 183 - 170955103 --TCTCCAATTCCAC--ATATGGCCCCTAAAGA-TGTTTTCTCTAAACTagggtttctcactctctgcactatttattaacattttgagcaagataattctttgttgtcagggg-----ctgt-------gctttgtaggatgtttagaatcatctttggcttcaacacattagatatcaggagcatgta-tccctcccca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788716 183 -   2996164 --TCTCCAATTCCAC--ATATGGCCCCTAAAGA-TGTTTTCTCTAAACTagggtttctcactctctgcactatttattaacattttgagcaagataattctttgttgtcagggg-----ctgt-------gctttgtaggatgtttagaatcatctttggcttcaacacattaggtatcaggagcatgta-tccctcccca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539768 183 +    766320 --TCTCCAATTCCAC--ATATGGCCCCTAAAGA-TGTTTTCTCTAAACTagggtttctcactctctgcactatttattaacattttgagcaagataattctttgttgtcagggg-----ctgt-------gctttgtaggatgtttagaatcatctttggcttcaacacattagatatcaggagcatgta-tccctcccca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28995871 183 -  71996105 --TCTCCAATTCCAC--ATATGGCCCCTAAAGA-TGTTTTCTCTAAACTagggtttctcactctctgcactatttattaacattttgagcaagataattctttgttgtcagggg-----ctgt-------gctttgtaggatgtttagaatcatctttggcttcaatacattaaatatcaggagtatgta-tccctcccca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172075 183 +    290775 --TCTCCAATTCCAC--ATATGGCCCCTAAAGA-TGTTTTCTCTAAACTagggtttctcactctctgcactatttattaacattttgagcaagataattctttgttgtcagggg-----ctgt-------gctttgtaggatgtttagaatcatctttggcttcaacacattagatatcaggagcatgta-tccctcccca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630797 183 -   3067355 --TCTCCAATTCCAC--ATATGGCCCCTAAAGA-TGTTTTCTCTAAACTaaggtttctcactctctgcactatttattaacattttgagcaagataattctttgttgtcaggga-----ctgt-------gctttgtaggatgtttagaatcatctttggcttcaacacattggatatcaggagcatgta-tccctcccca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30071510 172 + 171630274 --TCTCCATTTCTAC--ATAGGGTCCCTAAAGA-CGTTTTCTCTAAACcaggggttctcagtctctgcac----tattgatgtttcaagcaagataattctttgttgtcagagg-----c--------------tgtaggatatttagaatcatctttggcttctacacattagatatcaggagcatgta-tccctcccca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           219084 172 -    242197 --TCTCCATTTCTAC--ATAGGGTCCCTAAAGA-TGTTTTCTCTAAACcaggggttctcagtctctgcac----tattgacattttgagcaagataattctttgttgtcagagg-----c--------------tgcaggatatttagaatcatctttgacttctacacattaggtatcaggagcatgta-tcccgcccca
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212815 172 -   1771730 --TCTCCATTTCTAC--ATAGGGTCCCTAAAGA-TGTTTTCTCTAAACcaggggttctcagtctctgatc----tattgacgttttgagcaagataattctttgttgtcagagg-----c--------------tgtaggatatttagaatcatctttggcttctacacattagatatcaggagcatgta-tccctcccca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294781 172 -    457564 --TCTCCATTTCTAC--GTAGGGTCCCTAAAGA-TGTTTTCTCTAAACcaggggttctcagtctctgcac----tattgacgttttgagcaagataattctttgttgtcagagg-----c--------------tgtaggatatttagaatcatctttggcttctacacattagatatcagaagcatgta-tccctcccca
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                98858 181 + 123392446 --TCTCCATTTCCAC--ATACAGTACCTAAAGA-TTTTTTCTCTAAACcagagtttctaggtctctgc-------attgacactttgggcaggacagctctttcttggcagggg-----ctgtcc--tgtgcattgtaggatatttggaagcgtcattggcctctacccatgagatatgaggagcatcta-cgcctcccca
i micMur3.chr6             C 0 I 73
s proCoq1.NW_012152574v1     592467 185 +    730504 --TCTCCATTTCCAC--ATACAGCCCCTAAAGA-TTTTTTCTCTAAATcagagtttcttggtctctgcat----tattgacattttgggcaggacagctctttcttggcagggg-----ctgtcc--tgagcattgtaggatattcagaagcatcattggcctctacccattagatatcaggagcatctaccccctcccca
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           106534 186 +  18854210 --TCTTGATCTCCAC--ATATAGCCCCTAAAGATTTTTTTCTCCAAACcagagtttctcaaactctgcat----tattgacatttggggcagaatagctctttgctatcaaggg-----ctgtcc--tgtgcattgtaggatatttagaagtggcactagtctctacccattagatatcaggagcttccatctctccccca
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57927955 148 -  94987271 --CCTCCATTTCCCCAGATATGATACCT-AAGA-TTCTTTCTATAAACcagggtttctcaattcctatgc----tgttgaactacttaatcagggaagtc-ttattgctggggg-----ttgaactgtgtgcatggtaagatatttaga--------------------------------------gga-cccctccctc
i mm10.chr17               I 99 I 1
s canFam3.chr35            26224625 147 +  26524999 --TCTCCCATTCCTG-------------------GCTCCTTTCTAAACcagggttcctcaatctctgccc----tcttgacacttggatcagagtaaatctttgctgtgggggaactgcctat-------acatgataggatgtttagaagcatgcctggctc--acccattagatgccag--------------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            32890 115 +    102524 TCTCTCCCTTCCTGG----------CCCACAGA-C-TCTTCTCTAAACCAGAGCCCCTCAGCCTCggggc----------------------------------------ggac-----ctgg-------gcgctgtagga--tttagtgggacccccagcctgtcctc--tagagaccagga------------------
i dasNov3.JH582591         C 0 C 0

a score=13365.000000
s hg38.chr6_GL000254v2_alt   884289 1 +   4827813 t
s panTro5.chr6             29847062 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30081426 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888043 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74597490 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30077352 1 + 172585720 t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740198 1 - 170955103 t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788899 1 -   2996164 t
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539951 1 +    766320 t
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996054 1 -  71996105 t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172258 1 +    290775 t
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630980 1 -   3067355 t
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30071682 1 + 171630274 t
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           219256 1 -    242197 t
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212987 1 -   1771730 t
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     294953 1 -    457564 t
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     592652 1 +    730504 c
i proCoq1.NW_012152574v1   C 0 I 54
s otoGar3.GL873550           106720 1 +  18854210 t
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            33005 1 +    102524 t
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                99039 73 + 123392446 I
e mm10.chr17               57928103 1 -  94987271 I
e canFam3.chr35            26224772 0 +  26524999 C

a score=608135.000000
s hg38.chr6_GL000254v2_alt   884290 53 +   4827813 cccctacccccaactgtaacaaccaaaaatgcctccagataGTATA----GCGTCTG
s panTro5.chr6             29847063 51 + 175400573 cccctacccccaactgtaacaaccaaaaatgcctc--AATAGTGTA----GCGTCTG
i panTro5.chr6             C 0 I 2
s panPan2.chr6             30081427 51 + 173848474 cccctacccccaactgtaacaaccaaaaatgcctc--AATAGTGTA----GCGTCTG
i panPan2.chr6             C 0 I 2
s gorGor5.CYUI01015250v1    5888044 53 +   6154872 cccctacccccaactgtaacaaccaaaaatgcctccagatagtgTA----GCGTCTG
i gorGor5.CYUI01015250v1   C 0 I 2
s nomLeu3.chr1a            74597491 52 + 122973662 cccc-acccccaactgtaacaaccaaaaatgcctccagataGCGTA----GCATCTG
i nomLeu3.chr1a            C 0 I 2
s rheMac8.chr4             30077353 53 + 172585720 cccctaccctcaactgtaacaaccaaaaatgcctccagatagtgta----gcctctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740199 53 - 170955103 cccctaccctcaactgtaacaaccaaaaatgcctccagatagtgTA----GCCTCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788900 53 -   2996164 cccctaccctcaactgtaacaaccaaaaatgcctccagatagtgta----gcctctg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     539952 53 +    766320 cccctaccctcaactgtaacaaccaaaaatgcctccagatagtgta----gcctctg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996055 53 -  71996105 cccctaccctcaactgtaacaaccaaaaatgcctctagatagtgTA----GCCTCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172259 53 +    290775 cccctaccctcaactgtaacaaccaaaaatgcctccagatagtgta----gcctctg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2630981 53 -   3067355 cccctaccctcaactgtaacaaccaaaactgcctccagatagtgta----gcctctg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30071683 53 + 171630274 cccctacccccaactgtaacaaccaaaagtgcctccagataatgta----gcctctg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           219257 53 -    242197 ccccttcccccaactgtaacaaccaaaagtgcctccagatagtata----gcctctg
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     212988 53 -   1771730 cccctacccccaactgtaacaaccaaaagtgcctccagatagtata----gcctctg
i cebCap1.NW_016107755v1   C 0 I 420
s aotNan1.NW_018509740v1     294954 53 -    457564 gccctacccgcaactgtaacaaccaaaagtgcctccagatagtgta----gcctctg
i aotNan1.NW_018509740v1   C 0 I 422
s otoGar3.GL873550           106721 53 +  18854210 actccccttccagttgtgacaaccaaaattgtctccagatattgca----ttccctg
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57928104 29 -  94987271 ------tcctcac------------------cctccagaCATTGCA----ACCTCTG
i mm10.chr17               I 1 C 0
s canFam3.chr35            26224772 39 +  26524999 -------------ttgtgacaaccaaaactgtctctagatattgcc----aCCTCT-
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            33006 54 +    102524 ctcccactct--gttacaacaaccagagatgtccccagacatcacaaaatgcctcc-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                99039 73 + 123392446 I
e proCoq1.NW_012152574v1     592653 54 +    730504 I

a score=9114.000000
s hg38.chr6_GL000254v2_alt   884343 14 +   4827813 AGTCTAGGGTAGTA
s panTro5.chr6             29847116 14 + 175400573 AGTCTAGGGTAGTA
i panTro5.chr6             I 2 C 0
s panPan2.chr6             30081480 14 + 173848474 AGTCTAGGGTAGTA
i panPan2.chr6             I 2 C 0
s gorGor5.CYUI01015250v1    5888099 14 +   6154872 AGTCTAGGGTAGTA
i gorGor5.CYUI01015250v1   I 2 C 0
s nomLeu3.chr1a            74597545 14 + 122973662 AGTGTAGGGTAGTA
i nomLeu3.chr1a            I 2 C 0
s canFam3.chr35            26224811  1 +  26524999 ---C----------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            33060 14 +    102524 agcatgggggcgaa
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                99039 73 + 123392446 I
e mm10.chr17               57928133  0 -  94987271 C
e proCoq1.NW_012152574v1     592653 54 +    730504 I
e saiBol1.JH378357           219310  0 -    242197 C
e otoGar3.GL873550           106774  0 +  18854210 C
e aotNan1.NW_018509740v1     295007 422 -    457564 I
e cebCap1.NW_016107755v1     213041 420 -   1771730 I
e calJac3.chr4             30071736  0 + 171630274 C
e colAng1.NW_012115566v1    2631034  0 -   3067355 C
e manLeu1.NW_012099233v1     172312  0 +    290775 C
e chlSab2.chr17            28996108  0 -  71996105 C
e cerAty1.NW_012002711v1     540005  0 +    766320 C
e macNem1.NW_012011356v1    2788953  0 -   2996164 C
e macFas5.chr4             29740252  0 - 170955103 C
e rheMac8.chr4             30077406  0 + 172585720 C

a score=56201.000000
s hg38.chr6_GL000254v2_alt   884357 4 +   4827813 GTTG
s panTro5.chr6             29847130 4 + 175400573 GTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30081494 4 + 173848474 GTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888113 4 +   6154872 GTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74597559 4 + 122973662 GTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30077406 4 + 172585720 gttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740252 4 - 170955103 GTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788953 4 -   2996164 gttg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540005 4 +    766320 gttg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996108 4 -  71996105 GTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172312 4 +    290775 gttg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631034 4 -   3067355 gttg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30071736 4 + 171630274 gttg
i calJac3.chr4             C 0 I 295
s saiBol1.JH378357           219310 4 -    242197 gttg
i saiBol1.JH378357         C 0 C 0
s proCoq1.NW_012152574v1     592707 4 +    730504 GTTG
i proCoq1.NW_012152574v1   I 54 C 0
s otoGar3.GL873550           106774 4 +  18854210 gttg
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57928133 3 -  94987271 -TTG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26224812 4 +  26524999 GTTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            33074 4 +    102524 atca
i dasNov3.JH582591         C 0 I 9
e micMur3.chr6                99039 73 + 123392446 I
e aotNan1.NW_018509740v1     295007 422 -    457564 I
e cebCap1.NW_016107755v1     213041 420 -   1771730 I

a score=204767.000000
s hg38.chr6_GL000254v2_alt   884361 21 +   4827813 AAAACC--ACTACCCTAACTaat
s panTro5.chr6             29847134 21 + 175400573 AAAACC--ACTACCCTAACTaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30081498 21 + 173848474 AAAACC--ACTACCCTAACTaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888117 21 +   6154872 AAAACC--ACTACCCTAACTaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74597563 17 + 122973662 AAAACC--ACTACC----CTGAt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30077410 21 + 172585720 aaaacc--actACCCCAACTaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740256 21 - 170955103 AAAACC--ACTACCCCAACTaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788957 21 -   2996164 aaaacc--actACCCCAACTaat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540009 21 +    766320 aaaacc--actACCCCAACTaat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996112 21 -  71996105 AAAACC--ACTACCCTAACTaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172316 21 +    290775 aaaacc--actACCCCAACTaat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631038 21 -   3067355 aaaacc--actACCCTAACTaat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072035 21 + 171630274 aaaaCC--ACTACCCTAACTAAC
i calJac3.chr4             I 295 C 0
s saiBol1.JH378357           219314 21 -    242197 aaaacc--actACTCTGTCCAGT
i saiBol1.JH378357         C 0 I 277
s proCoq1.NW_012152574v1     592711 23 +    730504 AAAACTAGACTGCCCTGACTaat
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           106778 17 +  18854210 aaaacc--actgCC----CTaat
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57928136 16 -  94987271 AAAACC--ACGTCCCTAt-----
i mm10.chr17               C 0 C 0
s canFam3.chr35            26224816 21 +  26524999 AAAACC--ACAGCTGCAGCcaat
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            33087 21 +    102524 gaaacc--actgCTCTGGACTGT
i dasNov3.JH582591         I 9 C 0
e micMur3.chr6                99039 73 + 123392446 I
e aotNan1.NW_018509740v1     295007 422 -    457564 I
e cebCap1.NW_016107755v1     213041 420 -   1771730 I

a score=12376.000000
s hg38.chr6_GL000254v2_alt   884382 1 +   4827813 a
s panTro5.chr6             29847155 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30081519 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888138 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74597580 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30077431 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740277 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788978 1 -   2996164 a
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540030 1 +    766320 a
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996133 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172337 1 +    290775 a
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631059 1 -   3067355 a
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072056 1 + 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           219612 1 -    242197 A
i saiBol1.JH378357         I 277 C 0
s proCoq1.NW_012152574v1     592734 1 +    730504 a
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           106795 1 +  18854210 a
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57928152 1 -  94987271 a
i mm10.chr17               C 0 C 0
e micMur3.chr6                99039 73 + 123392446 I
e dasNov3.JH582591            33108 0 +    102524 C
e canFam3.chr35            26224837 1 +  26524999 I
e aotNan1.NW_018509740v1     295007 422 -    457564 I
e cebCap1.NW_016107755v1     213041 420 -   1771730 I

a score=1281165.000000
s hg38.chr6_GL000254v2_alt   884383 139 +   4827813 gttctcgaggtgtga-tccccagaccagta-catctgcatcccca-gggacttgctagaaatgtcagttctcaggccc--tagcccagatctactgaa-----tcagaatttccaggggaagggcctgataa-cctgtgaactaactacc
s panTro5.chr6             29847156 139 + 175400573 gttctcgaggtgtga-tccccagaccagta-catctgcatcccca-ggaacttgctagaaatgtcagttctcaggccc--tagcccagatctactgaa-----tcagaatttccaggggaagagcctgataa-cctgtgaactaactacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30081520 139 + 173848474 gttctcgaggtgtga-tccccagaccagta-catctgcatcccca-ggaacttgctagaaatgtcagttctcaggccc--tagcccagatctactgaa-----tcagaatttccaggggaagagcctgataa-cctgtgaactaactacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888139 139 +   6154872 gttctccaggtgtga-tccccagaccagta-cctctgcatcccca-ggaacttgctagaaatgtcagttctcaggccc--tagcccagatctactgaa-----tcagaatttccagggaaagggcctgataa-cctgtgaactaactacc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74597581 140 + 122973662 gttctcgaggtgtga-tccccagaccagtagcatctgcatcccca-ggaacttgctagaaatgtcaattctcaggccc--tagcccagatctactgaa-----tcagaatttccaggggaagggcctgataa-cctgtgaactaactacc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30077432 136 + 172585720 gttctcaaggtgtga-tccccagaccagtagcatcagcatcccca-ggaacttgctagaaatatcagttctcaggccc--tagcccagatctactgaa-----tcagaatttccaggggaagggcctggtaa-cctgta----tactacc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740278 136 - 170955103 gttctcaaggtgtga-tccccagaccagtagcatcagcatcccca-ggaacttgctagaaatatcagttctcaggccc--tagcccagatctactgaa-----tcagaatttccaggggaagggcctggtaa-cctgta----tactacc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2788979 136 -   2996164 gttctcaaggtgtga-tccccagaccagtagcatcagcatcccca-ggaacttgctagaaatatcagttctcaggccc--tagcccagatctactgaa-----tcagaatttccaggggaagggcctggtaa-cctgta----tactacc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540031 136 +    766320 gttctcaaggtgtga-tccccagagcagtagcatcagcatcccca-ggaacttgctagaaatatcagttctcaggccc--tagcccagatctactgaa-----tcagaatttccaggggaagggcctggtaa-cctgta----tactacc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996134 136 -  71996105 gttctcaaggtgtga-tccccagaccagtagcatcagcatcccca-ggaacttgctagaaatatcagttctcaggccc--tagcccagatctactgaa-----tcagaatgtccaggggaagggtctggtaa-cctgta----tactacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172338 136 +    290775 gttctcaaggtgtga-tccccagaccagtagcatcagcatcccca-ggaacttgctagaaatatcagttctcaggccc--tagcccagatctactgaa-----tcagaatttccaggggaagggcctggtaa-cctgta----tactacc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631060 136 -   3067355 gttctccaggtgtga-tccccagaccagtagcatcagcatcccca-gggacttactagaaatatcacttctcaggccc--tagcccagatctcctgaa-----tcagaatttccaggggaagggtctggtaa-cctgtg----tactacc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072057 101 + 171630274 gtcctcgaggtgtgattccccagaccaacagcatccacatcctca-ggaacttgctagaaatgtcagttctcaggccc--tagcccagatctactgaa-----tcaaaa-----------------------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           219613 101 -    242197 gttctcgaggtgtgattctccagaccaacagcatccatgtcctca-ggaacttgctagaaatgtcaattctcaggccc--tagcccagatctactgaa-----tcaaaa-----------------------------------------
i saiBol1.JH378357         C 0 C 0
s micMur3.chr6                99112 140 + 123392446 gttctcaaggtgtga-tacctagaccagcagtatcagcatcccc--agaatttgctagaaacgtaaattctcaggccc--ttcccctgatctactgaa-----tcagaatttccaagggaagggcccaataaccccgtgtactatctgcc
i micMur3.chr6             I 73 C 0
s proCoq1.NW_012152574v1     592735 139 +    730504 gttctccaggtgtga-tacctagaccagcagtatcagcatccct--ggaacttgctagaaacgtaaatactcaggccc--taccccagatctactgaa-----tcagaacttccaagggaagggcccagtaa-cctgtgtactaactgcc
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           106796 104 +  18854210 gttcccaaggggtgattccctagaccaataggatcagcacccc----------------------------caggccc--cagcccagacctactgaa-----tcagaactttcaaaagaag----cactga-------tactaactaac
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57928153 119 -  94987271 gttctcatgg-gcga----ccagatctgcagcctcagaaacttca-ggaatttgtcagaaatg-aagtcctcaggtcccacacctcagatctagggaa-----c-------tccagggaaagggttcactaa-cctaat-----------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26224838 127 +  26524999 gtcctcaaaatgtgg-tctc-aaaccagtagcatcaacatccgtagggaacgtgctagaaa-------------gaac--cactccagacctactgaa-----ttagaacttccaaaggaagagcccagtaa-tctgagtactaactaac
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            33108 107 +    102524 gttctcaaagtgcgg-ccccagggcccc---catcagcagcccca-ggaa-gtgttagaaacgcagcctccagcggcc--cggcctcGCTGCTCGCAAGCCGTCCAGCAGCTCCA-----------------------------------
i dasNov3.JH582591         C 0 C 0
e aotNan1.NW_018509740v1     295007 422 -    457564 I
e cebCap1.NW_016107755v1     213041 420 -   1771730 I

a score=1819856.000000
s hg38.chr6_GL000254v2_alt   884522 124 +   4827813 tttccaggtggttctgacggatgttaaagtttgagaactattgATCTAAACA----TAAGGCCATCCTTAGGGAATAAAAGCAACTCTGCTTCTTTTCTAAGTCTCCATGGCTCCGGCCCCCTAGGTC
s panTro5.chr6             29847295 124 + 175400573 tttccaggtggttctgacggatgttaaagtttgagaactattgATCTAAACA----TAAGGCCATCCTTAGGGAATAAAAGCAATTCTGCTTCTTTTCTAAGTCTCCATGGCTCCGGCCCCCTAGGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30081659 124 + 173848474 tttccaggtggttctgacggatgttaaagtttgagaactattgATCTAAACA----TAAGGCCATCCTTAGGGAATAAAAGCAATTCTGCTTCTTTTCTAAGTCTCCATGGCTCCGGCCCCCTAGGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888278 124 +   6154872 tttccaggtggttctgacagacgttaaagtttgagaactattgATCTAAACA----taaggccatccttagggaataaaagcaactctgcttcttttctaagtctccatggctccggccccctaggtc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74597721 124 + 122973662 tttccaggtggttctgacggacgttaaagtttgagaactattgATCTAAACA----taaggccatccttagggaataaaagcaactctgcttcttttctaagtctccatggctctggccccctaggtc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30077568 124 + 172585720 tttccagatggttctgacggacgttaaagtttgagaactgctgATCTAAACG----TAAGCCCATCCTTAGGGAATAAAAGCAACTCTGCTTCTTTTCTAAGTCTCCATGGCTCCGGCCCCCTAAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740414 124 - 170955103 tttccagatggttctgacggacgttaaagtttgagaactgctgATCTAAACG----TAAGCCCATCCTTAGGGAATAAAAGCAACTCTGCTTCTTTTCTAAGTCTCCATGGCTCCGGCCCCCTAAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789115 124 -   2996164 tttccagatggttccgacggacgttaaagtttgagaactgctgATCTAAACG----TAAGCCCATCCTTAGGGAATAAAAGCAACTCTGCTTCTTTTCTAAGTCTCCATGGCTCCGGCCCCCTAAGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540167 124 +    766320 tttccaggtggttctgacagacgttaaagtttgagaactactgATCTAAATG----TAAGGCCATCCTTAGGGAATAAAAGCAACTCTGCTTCTTTTCTAAGTCTCCGTGGCTCCGGCCCCCTAAATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996270 124 -  71996105 tttccaggtggttctgacggacgttaaagtttgagaactgctgATCTAAACG----TAAGGCCATCCTTAGGGAATAAAAGCAACTCTGCTTCTTTTCTAAGTCTCCATGGCTCCGGCCCCCTAAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172474 124 +    290775 tttccaggtggttctgacagacgttaaagtttgagaactactgATCTAAATG----TAAGGCCATCCTTAGGGAATAAAAGCAACTCTGCTTCTTTTCTAAGTCTCCGTGGCTCCGGCCCCCTAAATC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631196 124 -   3067355 tttccaggtggttctgacgaacgttaaagtttgagaactactgATCTAAACA----TAAGGCCATCCTTAGGGAATAAAAGCAAGTCTGCTTCTTTTCTAAGTCTCCATGGCTCCGGCCCCCTAAGTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072158 124 + 171630274 tttccaggtggttctgacggacattaatctttaagaactactgATCTAAACG----TAAGGCCATGCTTAGGGAATAAAGGCAACTCTGCTTCTTTTCTAAGTCTCCATGGCTCTGGCCCCCTAGGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           219714 124 -    242197 tttccaggtggttctgacggacattcaactttaagaactactgATCTAAACA----taaggccatccttagggaataaaggcaactctgcttcttttctaagtctccatggctctggccccctaggtc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     213461 124 -   1771730 tttccaggtggttctgacggacattaaactttaagaactactgATCTAAACG----TAAGGCCCTCCTTAGGGAATAAAGGCAATTCTGCTGCTTTTCTAAGTCTCCATGGCTCTGGCCCCCTAGGTC
i cebCap1.NW_016107755v1   I 420 C 0
s aotNan1.NW_018509740v1     295429 124 -    457564 tttccaggTGGTTCTGATGGATATTAAACTTTAAGAACTACTGATCTAAACG----taaggccatccttagggaataaaggcaactctgcttcttttctaagtctccatggctctggccccctaggtc
i aotNan1.NW_018509740v1   I 422 C 0
s micMur3.chr6                99252 124 + 123392446 tttccaggtggttctggtgacagctaaagtttgagaactactgATCTGAACG----TAAGGCCATCCTCAGAGAGCAAAGGCAACTCTGCTTCTCTTCTAAGTATGCACGGTTCTGGCCCTCTAGGTC
i micMur3.chr6             C 0 I 76
s proCoq1.NW_012152574v1     592874 124 +    730504 tttccagggggttctgatgacagctaaagtttgagaactactgATCTAAACA----TAAGGCCATCCTCAGAGAGCAAAGGCAACTCTGCTTCTCTTCTACGTCTCCACGGCTCTGGCCCTCTAGGTC
i proCoq1.NW_012152574v1   C 0 I 76
s otoGar3.GL873550           106900 124 +  18854210 tttccaggtagttctgatgacagctaaagtttcagaactactAATCTAAATG----TAAGGCCATCCTTAGAGAGTGAAAGCAACTTGGCTTGTTTTCTAAGTTTCCATGGCTCTGGCACCCTAGGTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57928272 118 -  94987271 tttccaggtggccctgatAG------GAGTATGGGAAC---TGATCCAAGCACACCTGAGGCCATCCTTCTGGGGTTGCGGCAATTCTGCTGTTTCTCTATGGTCCTACCCATTCCATCCTTCAGTC-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26224965  98 +  26524999 cctccag------------aaaggtaacgtctgagaactagtgCTCTAAACT----TAGCATCATCCTTATGAAGTGAAGGCAGCTCTGCTTCCTTTCTAAATCTCCATGACTC--------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            33215  81 +    102524 GCACTGAGTGGCCCTG-----------------AGAGCTACGGCGCCAAAGG----CAAAGTCGCATCTGCTGGGGGGAGGCAG--CCGCATCCTCTCCAGGCC------------------------
i dasNov3.JH582591         C 0 C 0

a score=1136667.000000
s hg38.chr6_GL000254v2_alt   884646 103 +   4827813 CAACCCTTGCTT-TGATCCACTTCTATTTGTGCTGTTTGATTAATCTATAATCTCTTTTGCCCCTAACCTATTGTTAAGACTGC-TCTATCCTCT-TCAGAAAACA
s panTro5.chr6             29847419 103 + 175400573 CAACCCTTGCTT-TGATCCACTTCTATTTGTGCTGTTTGATTCATCTATAATCTCTTTCGCCCCTAACCTGTTGTTAAGACTGC-TCTATCCTCT-TCAGAAAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30081783 103 + 173848474 CAACCCTTGCTT-TGATCCACTTCTATTTGTGCTGTTTGATTCATCTATAATCTCTTTCGCCCCTAACCTGTTGTTAAGACTGC-TCTATCCTCT-TCAGAAAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888402 103 +   6154872 caacccttgctt-tgatccacttctatttGTGTTGTTTGATTCATCTATAATCTCTTTCGGCCCTAACCTGTTGTTAAGACTGC-TCTATCCTCT-TCAGAAAATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74597845 103 + 122973662 caacccttgctt-tgatccacttctattcatgctgtttgattcatctGTAATCTCTTTCACCCCTAACCTGTTGTTAAGACTGC-TCTATCCTCT-TCAGAAAATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30077692 104 + 172585720 CAACCCTTGCTT-TGATCCACTTCTGTTGGTGCTGTTTGATTCATCTATAATCTCTCCTGCCCCTAACCTGTTGTCAAGACTGCTTCTCTCCTCT-TCAGAAAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740538 104 - 170955103 CAACCCTTGCTT-TGATCCACTTCTGTTGGTGCTGTTTGATTCATCTATAATCTCTCCGGCCCCTAACCTGTTGTCAAGACTGCTTCTCTCCTCT-TCAGAAAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789239 104 -   2996164 CAACCCTTGCTT-TGAGCCACTTCTGTTGGTGCTGTTTGATTCATCTATAATCTCTCCTGCCCCTAACCTGTTGTCAAGACTGCTTCTATCCTCT-TCAGAAAATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540291 104 +    766320 TAACCCTTGCTT-TGATCCACTTCTGTTGGTGCTGTTTGATTCATCTATAATCTCTCCTGCTCCTAACCTGTTGTCAAGACTGCTTCTATCCTCT-TCAGAAAATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996394 104 -  71996105 CAACCCTTGCTT-TGATCCACTTCTGTTGGTGCTGTTTGATTCATCTATAATCTCTCCTGCTCCTAACCTGTTGTCAAGACTGCTTCTATCCCCT-CCAGAAAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172598 104 +    290775 CAACCCTTGCTT-TGATCCACTTCTGTTGGTGCTGTTTGATTCATCTATAATCTCTCCTGCTCCTAACCTGTTGTCAAGACTGCTTCTATCCTCT-TCAGAAAATA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631320 104 -   3067355 CAACCCTTACTT-TGATCCACTTCTATTGGTGCTGTTTGATTCATCTATAATCTCTCCCGCCCCTAGGCTGTTGTTAAGACTGCTTCTATCCTCT-TCAGAAAATA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072282 103 + 171630274 CAAGCCTTGCTT-TAATCCACTTCTGTTGGTGCTG-CTGATTCATCTGTAATCTCTCCCTCCCCTATTCTGTTGTTAAGATTGCTTCTATCCTCT-TTGGGAAATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           219838 100 -    242197 caagccttgctt-tgatccacttctgttGGTGCTG-CTGATTCATCTGTAGTCTCTCCCTCCCCTAATC---TGTTAAGATTGCTTCTATCCTCT-TTGGGAAATA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     213585 103 -   1771730 CAAGCCTTGCTT-TAATCCACTTCTATTGGTGCTG-CTGATTCATCTGTAATCTCTCCCTCCCCTAATCTGTTGTTAAGATTGCTTCTATCCTCT-TTGGGAAATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     295553 102 -    457564 caagccttgctt-tgatccacttctattGGTGCTG-CTGATTCATCTGCAATCTCTCCCTCCCCTAATCTGTT-TTAAGATTGCTTCTATCCTCT-TTGGGAAATA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           107024 100 +  18854210 CAACCCCTGCTT-TGATCCATTTCTCTTGGTGCTGCTTCATTCATTTATAATGCCTTT----CCTAGACAATTGTTAAGGCTGT-TCTATCCTCTATTGGAAAATC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57928390  99 -  94987271 TGACTCTTACTC-TGATCCACTTCTTTTGGTGCCATTTGATCCGCCTATAATTTT------CCCTAATCACCTGAAAAGACTGCTTCTTTCCACTATTAAAAAAAA
i mm10.chr17               C 0 I 7
s canFam3.chr35            26225063  93 +  26524999 ------TTGCTTCTGATTTACCTCTCCTAGTCCTGCTTGATTCATCCACGGTCTATGC----CCTAGTCAGTTGTGAAGGCTGCTTCTACCCT---TTGGAAAATC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            33296  94 +    102524 CGACCCAAGCCC-TGGTCC-CTTCTCTTGCTTCTC-TTGTTTCAT-TGCAACGTCTTC----CCGAGTCAGCAGCTCAGGCCA--GCTCTGCTCT-CTGGAAAGC-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                99376  76 + 123392446 I
e proCoq1.NW_012152574v1     592998  76 +    730504 I

a score=685508.000000
s hg38.chr6_GL000254v2_alt   884749 48 +   4827813 TTGGCTTCCCCA-CTGGCATTTTAGGC-------------TG-----------GTCCCACTGGAAGCCCTATG
s panTro5.chr6             29847522 48 + 175400573 TTGGCTTCCCCA-CTGGCATTTTAGGC-------------TG-----------GTCCCACTGGAAGCCCTATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30081886 48 + 173848474 TTGGCTTCCCCA-CTGGCATTTTAGGC-------------TG-----------GTCCCACTGGAAGCCCTATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888505 48 +   6154872 TTGGCTTCCCCA-CTGGCATTTTAGGC-------------TG-----------GTCCCACTGGAAGCTCTATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74597948 48 + 122973662 TTGGCTTCCCCA-CTGGCATTTTAGGC-------------TG-----------GTCCCACTGGAAGCCCTATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30077796 48 + 172585720 TTGGCTTCCCCA-CTGGCATTTTAGGC-------------TG-----------GTCCTACTGGAAGCCCTACG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740642 48 - 170955103 TTGGCTTCCCCA-CTGGCATTTTAGGC-------------TG-----------GTCCTACTGGAAGCCCTACG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789343 48 -   2996164 TTGGCTTCCCCA-CTGGCATTTTAGGC-------------TG-----------GTCCTACTGGAAGCCCTACG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540395 48 +    766320 TTGGCTTCCCCA-CTGGCATTTTAGGC-------------TG-----------GTCCCACTGGAAGCCCTACG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996498 48 -  71996105 TTGGCTTCCCCA-CTGGCATTTTAGGC-------------TG-----------GTCCCACTGGAAGCCCTACG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172702 48 +    290775 TTGGCTTCCCCA-CTGGCATTTTAGGC-------------TG-----------GTCCCACTGGAAGCCCTACG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631424 48 -   3067355 TTGGCTTCCCCA-CTGGCATTTTAGGC-------------TG-----------GTCCCACTGGAAGCCCTACG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072385 48 + 171630274 TTGGCTTCCCCA-CCGACATTTTAGGC-------------TG-----------ATGCTACTAGAAACCCTAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           219938 48 -    242197 TTGGCTTCCCCA-CTGACATTTTAGGC-------------TG-----------ATGCTACTAGAAGCCCTAAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     213688 48 -   1771730 TTGGCTTCCCCA-CTGACATTTTAGGC-------------TG-----------ATGCTACAAGAAGCCCTAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     295655 48 -    457564 TTGGCTTCCCCA-CGGACATTTTAGGC-------------TG-----------ATGCTACTAGAAGCCCTTAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                99452 49 + 123392446 TTGGCTTCTCCACCTGGCATTTTAGGC-------------TG-----------GTATCACTAGAAACTCTATG
i micMur3.chr6             I 76 C 0
s proCoq1.NW_012152574v1     593074 49 +    730504 TTGGCTTCTCCACCTGGCATTTTAGGC-------------TG-----------GTGTCACTAGAAACCCTATG
i proCoq1.NW_012152574v1   I 76 I 40
s otoGar3.GL873550           107124 49 +  18854210 TTAGCTTCTCCAGCTGGTACTTTACGC-------------TG-----------GTGTCACTAGAAGTCCTATG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57928496 49 -  94987271 TAGGTTTTTCCACCTAACACTTTTAGC-------------TG-----------GGGTCTCAAGAAGGCCTTCA
i mm10.chr17               I 7 C 0
s canFam3.chr35            26225156 62 +  26524999 TTGGCTTTTCCACCAGGTGTTTTAAGCTACCAAGCAGGCATG-----------CTCTCACCAGAAGCCCTATG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            33390 55 +    102524 TCCACTTTGCCC-CTCA---TTTGAGC-------------TGCCGAGGGGTGTGTGTCAACAGAGG-CCTGTG
i dasNov3.JH582591         C 0 C 0

a score=17128.000000
s hg38.chr6_GL000254v2_alt   884797 5 +   4827813 GCCTC
s panTro5.chr6             29847570 5 + 175400573 GCCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30081934 5 + 173848474 GCCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888553 5 +   6154872 GCCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74597996 5 + 122973662 GCCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30077844 4 + 172585720 GACT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740690 4 - 170955103 GACT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789391 4 -   2996164 GACT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540443 4 +    766320 GACT-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996546 4 -  71996105 GACT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172750 4 +    290775 GACT-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631472 4 -   3067355 GACT-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072433 5 + 171630274 GCCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           219986 5 -    242197 GCCTC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     213736 5 -   1771730 GCCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     295703 5 -    457564 GCCTC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                99501 5 + 123392446 GCCTC
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           107173 5 +  18854210 GCTTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57928545 5 -  94987271 GCTTT
i mm10.chr17               C 0 I 102
s canFam3.chr35            26225218 5 +  26524999 GCCTC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            33445 5 +    102524 GCCTG
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     593123 40 +    730504 I

a score=260429.000000
s hg38.chr6_GL000254v2_alt   884802 34 +   4827813 AAAAGCAGGAACCATCTTTCTCTAGACAC---AAAGT
s panTro5.chr6             29847575 34 + 175400573 AAAAGCAGGAACCATCTTTCTCTAGACAC---AAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30081939 34 + 173848474 AAAAGCAGGAACCATCTTTCTCTAGACAC---AAAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888558 34 +   6154872 AAAAGCAGGAACCATCTTTCTCTAGACAC---AAAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74598001 34 + 122973662 AAAAGCAGGAACCATCTTTCTCTAGAGAC---AAAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30077848 26 + 172585720 -----------CTATCTTTCTCTAGAGACAAAAAAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740694 26 - 170955103 -----------CTATCTTTCTCTAGAGACAAAAAAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789395 26 -   2996164 -----------CTATCTTTCTCTAGAGACAAAAAAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540447 25 +    766320 -----------CTATCTTTCTCTAGAGAC-AAAAAGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996550 25 -  71996105 -----------CTATCTTTCTCTAGAGAC-AAAAAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172754 25 +    290775 -----------CTATCTTTCTCTAGAGAC-AAAAAGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631476 25 -   3067355 -----------CTATCTTTCTCTAGAGAC-AAAAAGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072438 36 + 171630274 AAAAGCAGACACTATCTTTCTCTAGAGAC-TAAGAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           219991 36 -    242197 AAAAGCAGACACTATCTTTCTCTAGAGAC-TAAGAGT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     213741 37 -   1771730 AAAAGCAGACACTATCTTTCTCTAGAGACTTAACAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     295708 36 -    457564 AAAAGCAGGCACTATCTTTCTGTAGAGAC-TAAGAGT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                99506 34 + 123392446 AAAGGCAGACATTACCTTTCTCTAGAGAC-CAAGA--
i micMur3.chr6             C 0 I 2
s otoGar3.GL873550           107178 34 +  18854210 GATGGCAGACACTATCTTTCTCTAGAGAC-CAAGA--
i otoGar3.GL873550         C 0 I 2
s canFam3.chr35            26225223 33 +  26524999 AAAGGCAGGCACCACTCTTCTCTAAAGAC-CAAG---
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            33450 35 +    102524 -GAAGGTGGCACCACCTTGCTCTAGAAAG-GGACGGC
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57928550 102 -  94987271 I
e proCoq1.NW_012152574v1     593123 40 +    730504 I

a score=635943.000000
s hg38.chr6_GL000254v2_alt   884836 49 +   4827813 CAGAAAGGGACC-----------------TTC-----CAAGTCTTCC--CACCCCAATGCTCA-------------------------------GGTGTCCCTC---
s panTro5.chr6             29847609 49 + 175400573 CAGAAAGGGACC-----------------TTC-----CAAGTCTTCC--CACCCCAATGCTCA-------------------------------GGTGTCCCTC---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30081973 49 + 173848474 CAGAAAGGGACC-----------------TTC-----CAAGTCTTCC--CACCCCAATGCTCA-------------------------------GGTGTCCCTC---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888592 49 +   6154872 CAGAAAGGGACC-----------------TTC-----CAAGTCTTCC--CGCCCCAATGCTCA-------------------------------GGTGTCCCTC---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74598035 49 + 122973662 CAGAAAGGGATC-----------------TTC-----CAAGTCTTCC--CGCCCCAATGCTCA-------------------------------GGTGTCCCTC---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30077874 49 + 172585720 CAGAAAGGGACC-----------------TTC-----CAAGTCTTCC--TGCCCTAACGCTCA-------------------------------GGTGTCCCTC---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740720 49 - 170955103 CAGAAAGGGACC-----------------TTC-----CAAGTCTTCC--TGCCCTAACGCTCA-------------------------------GGTGTCCCTC---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789421 49 -   2996164 CAGAAAGGGACC-----------------TTC-----CAAGTCTTCC--TGCCCTAACGCTCA-------------------------------GGTGTCCCTC---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540472 49 +    766320 CAGAAAGGGACC-----------------TTC-----CAAGTCTTCC--TGCCCCAACGCTCA-------------------------------GGTGTCCCTT---
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996575 49 -  71996105 CAGAAAGGGACC-----------------TTC-----CAAGTCTTCC--TGCCCCCACGCTCA-------------------------------GGTGTCCCTC---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172779 49 +    290775 CAGAAAGGGACC-----------------TTC-----CAAGTCTTCC--TGCCCCAACGCTCA-------------------------------GGTGTCCCTT---
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631501 49 -   3067355 CAGAAAGGGACC-----------------TTC-----CAAGTCTTCC--TGCCCCAACACTCA-------------------------------GGTGTCCCTC---
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072474 49 + 171630274 CAGAAAAGGACC-----------------TTC-----CAAGTCTTCC--TGCCCCAATGCTCA-------------------------------GGTGTTCCAC---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220027 49 -    242197 CAGAAAGGGACC-----------------TTC-----CAAGTCTTCC--TGCCCGAACGCTCA-------------------------------GGTGTTCCTC---
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     213778 47 -   1771730 CAGAAAGGGACC-----------------TTC-----CAAGTCTTCC--TGCCCCAATGCTCA-------------------------------GGTGTTC--C---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     295744 49 -    457564 CAGAAAGAGACC-----------------TTC-----CAAGTCTTCC--TGCCCCAACGCTCA-------------------------------GGTGTTCCTC---
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                99542 49 + 123392446 CAAAAAGAGACT-----------------CTC-----CAAGTCATCC--TGCTCCAAAGCTCA-------------------------------GGTGTCCCTC---
i micMur3.chr6             I 2 I 20
s proCoq1.NW_012152574v1     593163 49 +    730504 CAGAGAGAGACC-----------------CTC-----CAAGTCATCC--TGCTCCAAAGCTCA-------------------------------GGTGTCCCTC---
i proCoq1.NW_012152574v1   I 40 C 0
s otoGar3.GL873550           107214 54 +  18854210 CAGACAGAAACC-----------------ATCCAAGTCAAGTCACCC--TGCTCCAGAGCTCA-------------------------------GGTGTCCTTC---
i otoGar3.GL873550         I 2 C 0
s canFam3.chr35            26225256 98 +  26524999 -AGCCAgggatccctgggtggcgcagcggttt-----ggcgcctgcctttggcccagggcgcgatcctggagacccgggatcgaatcccacatcgggctccctg---
i canFam3.chr35            C 0 I 13
s dasNov3.JH582591            33485 47 +    102524 CAGGAGAAAACT-----------------GTC-----CGACTCCCCG--TTCCCCGGCTCGCA------------------------------------CCCTCCAC
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57928550 102 -  94987271 I

a score=165331.000000
s hg38.chr6_GL000254v2_alt   884885 14 +   4827813 TATGTCCCTAACCA---
s panTro5.chr6             29847658 14 + 175400573 TATGTCCCTAACCA---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082022 14 + 173848474 TATGTCCCTAACCA---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888641 14 +   6154872 TATGTCCCTAACCA---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74598084 14 + 122973662 TACGTCCCTAACCA---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30077923 14 + 172585720 TGTGTTCCTAACCA---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740769 14 - 170955103 TGTGTTCCTAACCA---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789470 14 -   2996164 TGTGTTCCTAACCA---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540521 14 +    766320 TATGTTCCTAACCA---
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996624 14 -  71996105 TATGTTCCTGACCA---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172828 14 +    290775 TATGTTCCTAACCA---
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631550 14 -   3067355 TATGTTCCTAACCA---
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072523 14 + 171630274 TGTGTCCCTAACCA---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220076 14 -    242197 TGTGTCCCTAACCA---
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     213825 14 -   1771730 TGTGTCCCTAACCA---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     295793 14 -    457564 TGTGTCCCTAACCA---
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     593212 14 +    730504 TACATTCCTAACCA---
i proCoq1.NW_012152574v1   C 0 I 6
s otoGar3.GL873550           107268 14 +  18854210 TAAATTCCTAACCA---
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26225367 14 +  26524999 tctccctctgcctg---
i canFam3.chr35            I 13 C 0
s dasNov3.JH582591            33532 17 +    102524 CACGTCCCTGCTCCTCA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                99591 20 + 123392446 I
e mm10.chr17               57928550 102 -  94987271 I

a score=-3512.000000
s hg38.chr6_GL000254v2_alt   884899 4 +   4827813 TCTC--
s panTro5.chr6             29847672 4 + 175400573 TCTC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082036 4 + 173848474 TCTC--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888655 4 +   6154872 ACTC--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74598098 4 + 122973662 ATTC--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30077937 4 + 172585720 ACTC--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740783 4 - 170955103 ACTC--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789484 4 -   2996164 ACTC--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540535 4 +    766320 ACTC--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996638 4 -  71996105 ACTC--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172842 4 +    290775 ACTC--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631564 4 -   3067355 ACTC--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072537 2 + 171630274 A--C--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220090 2 -    242197 A--C--
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     213839 2 -   1771730 A--C--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     295807 2 -    457564 A--C--
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           107282 4 +  18854210 ACTC--
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26225381 4 +  26524999 tgtc--
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            33549 4 +    102524 --TCcc
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                99591 20 + 123392446 I
e mm10.chr17               57928550 102 -  94987271 I
e proCoq1.NW_012152574v1     593226 6 +    730504 I

a score=82068.000000
s hg38.chr6_GL000254v2_alt   884903 15 +   4827813 TCTGT-TCTCTCTCtc
s panTro5.chr6             29847676 13 + 175400573 TCTGT---TCCCTCtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082040 13 + 173848474 TCTGT---TCCCTCtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888659 15 +   6154872 TCTGT-TCTCTCTCtc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74598102 15 + 122973662 TCTGT-TCTCTCTCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30077941  5 + 172585720 TCTGt-----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740787  9 - 170955103 TCTGT-------TCtc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789488  9 -   2996164 TCTGT-------TCtc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540539 13 +    766320 TCTGT---TCTCTCtc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996642 11 -  71996105 TCTGT-----TCTCtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172846 13 +    290775 TCTGT---TCTCTCtc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631568 15 -   3067355 TCTGT-TCTCTCTCtc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072539 13 + 171630274 TCTGt---tctctctt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220092 13 -    242197 TCTGt---tctctctc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     213841 13 -   1771730 TCTGT---TCtctctc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     295809 13 -    457564 TCTGT---TCtctctt
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26225385 16 +  26524999 tctgcctctctctctc
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            33553 15 +    102524 ccggc-tcacaccctc
i dasNov3.JH582591         C 0 I 684
e micMur3.chr6                99591 20 + 123392446 I
e mm10.chr17               57928550 102 -  94987271 I
e proCoq1.NW_012152574v1     593226  6 +    730504 I
e otoGar3.GL873550           107286  0 +  18854210 C

a score=12376.000000
s hg38.chr6_GL000254v2_alt   884918 1 +   4827813 t
s panTro5.chr6             29847689 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082053 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888674 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74598117 1 + 122973662 T
i nomLeu3.chr1a            C 0 M 3916
s rheMac8.chr4             30077946 1 + 172585720 t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740796 1 - 170955103 t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789497 1 -   2996164 t
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540552 1 +    766320 t
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996653 1 -  71996105 t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172859 1 +    290775 t
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631583 1 -   3067355 t
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072552 1 + 171630274 t
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220105 1 -    242197 t
i saiBol1.JH378357         C 0 I 1
s cebCap1.NW_016107755v1     213854 1 -   1771730 t
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018509740v1     295822 1 -    457564 t
i aotNan1.NW_018509740v1   C 0 I 1
s canFam3.chr35            26225401 1 +  26524999 t
i canFam3.chr35            C 0 C 0
e micMur3.chr6                99591 20 + 123392446 I
e mm10.chr17               57928550 102 -  94987271 I
e dasNov3.JH582591            33568 684 +    102524 I
e proCoq1.NW_012152574v1     593226 6 +    730504 I
e otoGar3.GL873550           107286 0 +  18854210 C

a score=65168.000000
s hg38.chr6_GL000254v2_alt   884919 10 +   4827813 ctctttttgt
s panTro5.chr6             29847690 10 + 175400573 ctctttttgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082054 10 + 173848474 ctctttttgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888675 10 +   6154872 ctctttttgt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30077947 10 + 172585720 ctctttttgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740797 10 - 170955103 ctctttttgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789498 10 -   2996164 ctctttttgt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540553 10 +    766320 ctctttttgt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996654 10 -  71996105 ctctttttgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172860 10 +    290775 ctctttttgt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631584 10 -   3067355 ctctttttgt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072553  2 + 171630274 --------at
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220107  5 -    242197 -----ttggt
i saiBol1.JH378357         I 1 C 0
s cebCap1.NW_016107755v1     213856  5 -   1771730 -----tttgt
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018509740v1     295824  5 -    457564 -----tttgt
i aotNan1.NW_018509740v1   I 1 C 0
s canFam3.chr35            26225402 10 +  26524999 ctctctctgt
i canFam3.chr35            C 0 I 103
e micMur3.chr6                99591 20 + 123392446 I
e mm10.chr17               57928550 102 -  94987271 I
e dasNov3.JH582591            33568 684 +    102524 I
e proCoq1.NW_012152574v1     593226  6 +    730504 I
e otoGar3.GL873550           107286  0 +  18854210 C
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=459415.000000
s hg38.chr6_GL000254v2_alt   884929 51 +   4827813 ttagagctgggggtctcactatattgcccaggctggtcttgaactcctggg
s panTro5.chr6             29847700 51 + 175400573 ttagagctgggggtctcactatattgcccaggctggtcttgaactcctggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082064 51 + 173848474 ttagagctgggggtctcactatattgcccaggctggtcttgaactcctggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888685 51 +   6154872 ttagagctgggggtctcactatattgcccaggctgatcttgaactcctggg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30077957 51 + 172585720 ttagagctgggggtctcactatatcgcccaggctggtcttgaactcctggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740807 51 - 170955103 ttagagctgggggtctcactatatcgcccaggctggtcttgaactcctggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789508 51 -   2996164 ttagagctgggggtctcactatatcgcccaggctggtcttgaactcctggg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540563 51 +    766320 ttagagttgggggtctcactatgtcgcccaggctggtcttgaactcctggg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996664 51 -  71996105 ttagagctgggggtctcactatattgcccaggctggtcttgaactcctggg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172870 51 +    290775 ttagagttgggggtctcactatgtcgcccaggctggtcttgaactcctggg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631594 51 -   3067355 ttagagctgggggtctcactatattgcccaggctggtcttgaactcctggg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072555 51 + 171630274 ttagagctagggatctcactatattgcccaggctggtcttaaactcgtgag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220112 51 -    242197 ttagagctagggatctcactatactgcccaacctggtcttgaactcgtggg
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     213861 51 -   1771730 ttagagctagggatctcactatgttgctcaagctggtcttgaactcgtggg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     295829 51 -    457564 ttagagctaaggatctcactatattgcccaggctggtcttaaactcgtggg
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6                99591 20 + 123392446 I
e mm10.chr17               57928550 102 -  94987271 I
e dasNov3.JH582591            33568 684 +    102524 I
e proCoq1.NW_012152574v1     593226  6 +    730504 I
e canFam3.chr35            26225412 103 +  26524999 I
e otoGar3.GL873550           107286  0 +  18854210 C
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=492111.000000
s hg38.chr6_GL000254v2_alt   884980 67 +   4827813 ctccagtgatc-ctctgccttggcctcccaaggtgctggggactacaggtgtgag-----ccactagatccag
s panTro5.chr6             29847751 67 + 175400573 ctccagtgatc-ctctgccttggcctcccaaggtgctggggactacaggtgtgag-----ccactagatccag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082115 67 + 173848474 ctccagtgatc-ctctgccttggcctcccaaggtgctggggactacaggtgtgag-----ccactagatccag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888736 67 +   6154872 ctccagtgatc-ctctgccttggcctcccaaggtgctggggattacaggtgtgag-----ccactagatccag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30078008 67 + 172585720 ctccagtgatctttctgccttggcttcccaaggtgct-gggattacaggtgtgag-----ccaccagacccag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740858 67 - 170955103 ctccagtgatctttctgccttggcttcccaaggtgct-gggattacaggtgtgag-----ccaccagacccag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789559 67 -   2996164 ctccagtgatctttctgccttggcttcccaaggtgct-gggattacaggtgtgag-----ccaccagacccag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540614 67 +    766320 ctccagtgatctttctgccttggcttccctaggtgct-gggattacaggtgtgag-----ccaccagacccag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996715 67 -  71996105 ctccagtgatctttctgccttggcttcccaaggtgct-gggattacaggtgtgag-----ccaccagacccag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172921 67 +    290775 ctccagtgatctttctgccttggcttccctaggtgct-gggattacaggtgtgag-----ccaccagacccag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631645 67 -   3067355 ctccagtgatctttctgccttggcttcccaagatgct-gggattacaggtgtgag-----ccaccagacccag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072606 72 + 171630274 ctccagtgatccttctgctttggcctcctcaggtgct-gagattacaggtgtgagGGATTTTACTAGGCCCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220163 72 -    242197 ctcaagtgatccttctgctttggtctcctgaagtgat-gggattacaggtatgagGTATTTTACTAGGCCCAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     213912 72 -   1771730 ctccagtgatccttctgctttggcctcctcaagtgct-gggattacaggtgtgagggattttactaggcccag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     295880 72 -    457564 ctccagtgatccttctgctttggcctcctcaggtgct-gggattacaggtgtgagGGATTTTACTAGGCCCAG
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57928652 22 -  94987271 ATCCAGTGACACC----------CCCTCCAAG-----------------------------------------
i mm10.chr17               I 102 C 0
e micMur3.chr6                99591 20 + 123392446 I
e dasNov3.JH582591            33568 684 +    102524 I
e proCoq1.NW_012152574v1     593226  6 +    730504 I
e canFam3.chr35            26225412 103 +  26524999 I
e otoGar3.GL873550           107286  0 +  18854210 C
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=43359.000000
s hg38.chr6_GL000254v2_alt   885047 5 +   4827813 ccAAA
s panTro5.chr6             29847818 5 + 175400573 ccAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082182 5 + 173848474 ccAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888803 5 +   6154872 ccAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30078075 5 + 172585720 ccAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740925 5 - 170955103 ccAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789626 5 -   2996164 ccAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540681 5 +    766320 ccAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996782 5 -  71996105 ccAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172988 5 +    290775 ccAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631712 5 -   3067355 ccAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072678 5 + 171630274 CAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220235 5 -    242197 CAAAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     213984 5 -   1771730 caaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     295952 5 -    457564 CAAAA
i aotNan1.NW_018509740v1   C 0 C 0
s dasNov3.JH582591            34252 5 +    102524 CCACA
i dasNov3.JH582591         I 684 C 0
e micMur3.chr6                99591 20 + 123392446 I
e mm10.chr17               57928674 0 -  94987271 C
e proCoq1.NW_012152574v1     593226 6 +    730504 I
e canFam3.chr35            26225412 103 +  26524999 I
e otoGar3.GL873550           107286 0 +  18854210 C
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=24024.000000
s hg38.chr6_GL000254v2_alt   885052 2 +   4827813 TC
s panTro5.chr6             29847823 2 + 175400573 TC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082187 2 + 173848474 TC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888808 2 +   6154872 TC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30078080 2 + 172585720 TC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740930 2 - 170955103 TC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789631 2 -   2996164 TC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540686 2 +    766320 TC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996787 2 -  71996105 TC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172993 2 +    290775 TC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631717 2 -   3067355 TC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072683 2 + 171630274 TC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220240 2 -    242197 TC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     213989 2 -   1771730 tc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     295957 2 -    457564 TC
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26225515 2 +  26524999 CC
i canFam3.chr35            I 103 C 0
s dasNov3.JH582591            34257 2 +    102524 TC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                99591 20 + 123392446 I
e mm10.chr17               57928674 0 -  94987271 C
e proCoq1.NW_012152574v1     593226 6 +    730504 I
e otoGar3.GL873550           107286 0 +  18854210 C
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=49447.000000
s hg38.chr6_GL000254v2_alt   885054 4 +   4827813 CCTG
s panTro5.chr6             29847825 4 + 175400573 CCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082189 4 + 173848474 CCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888810 4 +   6154872 CCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30078082 4 + 172585720 CCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740932 4 - 170955103 CCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789633 4 -   2996164 CCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540688 4 +    766320 CCTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996789 4 -  71996105 CCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172995 4 +    290775 CCTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631719 4 -   3067355 CCTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072685 4 + 171630274 CCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220242 4 -    242197 TCTG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     213991 4 -   1771730 tctg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     295959 4 -    457564 CCTG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           107286 4 +  18854210 CTTA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26225517 4 +  26524999 TCTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            34259 4 +    102524 CCTG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6                99591 20 + 123392446 I
e mm10.chr17               57928674 0 -  94987271 C
e proCoq1.NW_012152574v1     593226 6 +    730504 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1008708.000000
s hg38.chr6_GL000254v2_alt   885058 76 +   4827813 TTTTCTGTC--AGCCTCCTCTAGCTCCCTGCTATAAGACAGAAGCAACGATTGGCAAGTCCTGGGCTCA-------GGGCACCAA
s panTro5.chr6             29847829 76 + 175400573 TTTTCTGTC--AGCCTCCTCTAGCTCCCTGCTATAAGACAGAAGCAACGATTGGCAAGTCCTGGGCTCA-------GGGCACCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082193 76 + 173848474 TTTTCTGTC--AGCCTCCTCTAGCTCCCTGCTATAAGACAGAAGCAACGATTGGCAAGTCCTGGGCTCA-------AGGCACCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888814 76 +   6154872 TTTTCTGTC--AGCCTCCTCTAGCTCCCTGCTATAAGACAGAAGAAACGATTGGCAACTCCTGGGCTCA-------GGGCACCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30078086 76 + 172585720 TTTTCTGTC--AGCCTCCTCTAGCTCCCTGCTATAAGACAGAATCAATGATCGGCCGGTCCTGGGCTCA-------GGGCACCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29740936 76 - 170955103 TTTTCTGTC--AGCCTCCTCTAGCTCCCTGCTATAAGACAGAATCAATGATCGGCGGGTCCTGGGCTCA-------GGGCACCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789637 76 -   2996164 TTTTCTGTC--AGCCTCCTCTAGCTCCCTGCTATAAGACAGAATCAATGATCGGCGGGTCCTGGGCTCA-------GGGCACCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540692 76 +    766320 TTTTCTGTC--AGCCTCCTCTAGCTCCCTGCTATAAGACAGAATCAATGATCGGCGGGTCCTGGGCTCA-------GGGCACCAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996793 76 -  71996105 TTTTCTGTC--AGCCTCCTCTAGCTCCCTGCTATAAGACAGAATCAATGATCGGCGGGTCCTGGGCTCA-------GGGCACCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     172999 76 +    290775 TTTTCTGTC--AGCCTCCTCTAGCTCCCTGCTATAAGACAGAATCAATGATCGGCGGGTCCTGGGCTCA-------GGGCACCAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631723 76 -   3067355 TTTTCTGTC--AGCCTCCTCTAGCTCCCTGCTATAAGACAGAATCAATGATCGGCAGGTCCTGGGCTCA-------GGGCACCAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072689 76 + 171630274 TTTTCTGTC--AGCCTCCTCTAGTTCCCGGCTATAGGACAGAAGCAACGACTGGCAGGTCCTGGGCTCA-------GAGCACCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220246 76 -    242197 TTTTCTGTC--AGCCTCCTCTAGCTCCCAGCTACAGGACAGAAGCAACAACTGGCAGGTCCTGGGCTCA-------GAGCACCAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     213995 76 -   1771730 ttttctgtC--AGCCTCCTCTAGCTCCCGGCTATAGGACAGACGCAACGACTGGCAGGTCCTGGGCTCA-------GAGCACCAA
i cebCap1.NW_016107755v1   C 0 I 11
s aotNan1.NW_018509740v1     295963 76 -    457564 TTTTCTGTC--AGCCTCCTCTAGATCCCAGCTATAGGACAGAAGCAACGACTGGCAGGTCCTAGGCTCA-------GAGCACCAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                99611 76 + 123392446 TTTTCTGTC--AGGCTCCTCCAGTCCCTTGCTATGGGACAGAAGCCATGACTGGCAGGTCCTGGGCTCA-------GCGCACCAA
i micMur3.chr6             I 20 C 0
s proCoq1.NW_012152574v1     593232 76 +    730504 TTTTCTGTC--GGGCTCCTCCAGTCCCTTGCTATGGGACAGAAGCCATGACTGGCAGGTCCTGGGCTCA-------GGGCACCAA
i proCoq1.NW_012152574v1   I 6 C 0
s otoGar3.GL873550           107290 76 +  18854210 ATTTCTTTT--GGGCTCCTTCAATTCATTGCTATGGGACAAAAGCCACAACTGGCAGGTCCCAGGCTCA-------GGACATTAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57928674 75 -  94987271 -CTCTCATC--AGTCCCTTCTCTCTCCCCAGTGTGAGACAGAGTCCTTGGGTGGCAGGTTCTAGGCTTT-------GGACACTTA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26225521 77 +  26524999 CTTCCTGCCAGAGGCTTCCCTAATTCTCTGCTG-GGGGTAGAAGTCACGACTGGCAGGTCCCAGGCTCA-------CGGTGCTGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            34263 84 +    102524 CTCCCTGCCGGGGGCTCAGGTGGCACCTC-CCAGGGCACAGATGCCACAACTGGCTGCGCTGGGCCACAACTGGCCGCACACCAA
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=121778.000000
s hg38.chr6_GL000254v2_alt   885134 9 +   4827813 CAAGTCTTT
s panTro5.chr6             29847905 9 + 175400573 CAAGTCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082269 9 + 173848474 CAAGTCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888890 9 +   6154872 CAAGTCCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30078162 9 + 172585720 CAAGCCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29741012 9 - 170955103 CAAGCCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789713 9 -   2996164 CAAGCCTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540768 9 +    766320 CAAGCCTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996869 9 -  71996105 CAAGCCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     173075 9 +    290775 CAAGCCTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631799 9 -   3067355 CAAGCCTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072765 9 + 171630274 CAAGCCTTT
i calJac3.chr4             C 0 I 5
s saiBol1.JH378357           220322 9 -    242197 CAAGCCTTT
i saiBol1.JH378357         C 0 I 5
s aotNan1.NW_018509740v1     296039 9 -    457564 CAAGCCTTT
i aotNan1.NW_018509740v1   C 0 I 5
s micMur3.chr6                99687 9 + 123392446 TAAGTCTTC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     593308 9 +    730504 CAAGCCTTT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           107366 9 +  18854210 TAAGCCTTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57928749 9 -  94987271 TAAGCCTTT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26225598 9 +  26524999 TAAGCCTTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            34347 7 +    102524 CAGGTCC--
i dasNov3.JH582591         C 0 C 0
e cebCap1.NW_016107755v1     214071 11 -   1771730 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1549714.000000
s hg38.chr6_GL000254v2_alt   885143 119 +   4827813 CTGGCTTTGGTAGCCAGTTCCAATACTTTCCCAGGTT-TT----ATGGATGACTCACCTCTTGGGTACTCTACA---GGAAAGTGA----TCTTCCAAAATTTTTT-CATTGTATTTTTCAACTAACATACC
s panTro5.chr6             29847914 119 + 175400573 CTGGCTTTGGTAGCCAGTTCCAATACTTTCCCAGGTT-TT----ATGGATGACTCACCTCTTGGGTACTCTACA---GGAAAGTGA----TCTTCCAAAATTTTTT-CATTGTATTTTTCAACTAACATACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082278 119 + 173848474 CTGGCTTTGGTAGCCAGTTCCAATACTTTCCCAGGTT-TT----ATGGATGACTCACCTCTTGGGTACTCTACA---GGAAAGTGA----TCTTCCAAAATTTTTT-CATTGTATTTTTCAACTAACATACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5888899 119 +   6154872 CTGGCTTTGGTAGCCAGTTCCAATACTTTCCCAGGTT-TT----ATGGATGACTCACCTCTTGGGTACTCTACA---GGAAAGTGA----TCTTCCAAAATTTTTT-CATTGTATTTTTCAACTAACATACC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30078171 119 + 172585720 CTGGCTCTGGTAGCCAGTTCCAATACTTTCCCAGGTT-TT----AGGGATGACTCACCTCTTGGGTACTCTACG---GGAAAGTGA----TCTTCCAAAACTTTTT-CATTGTATTTTTCAACTAACATACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29741021 119 - 170955103 CTGGCTTTGGTAGCCAGTTCCAATACTTTCCCAGGTT-TT----AGGGATGACTCACCTCTTGGGTACTCTATG---GGAAAGTGA----TCTTCCAAAACTTTTT-CATTGTATTTTTCAACTAACATACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789722 119 -   2996164 CTGGCTTTGGTAGCCAGTTCCAATACTTTCCCAGGTT-TT----AGGGATGACTCACCTCTTGGGTATTCTACA---GGAAAGTGA----TCTTCCAAAACTTTTT-CATTGTATTTTTCAACTAACATACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540777 119 +    766320 CTGGCTTTGGTAGCCAGTTCCAATGCTTTCCCAGGTT-TT----AGGGATGACTCACCTCTTGGGTACTCTACG---GGAAAGTGA----TCTTCCAAAATGTTTT-CATTGTATTTTTCAACTAACATACC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996878 119 -  71996105 CTGGCTTTGGTAGCCAGTTCCAATACTGTCCCAGGTT-TC----AGGGATGACTCACCTCTTGGGTACTCTATG---GGAAAATGA----TCTTCCAAAATTTTTT-CATTGTATTTTTCAACTAACATACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     173084 119 +    290775 CTGGCTTTGGTAGCCAGTTCCAATGCTTTTCCAGGTT-TT----AGGGATGACTCACCTCTTGGGTACTCTACG---GGAAAGTGA----TCTTCCAAAATGTTTT-CATTGTATTTTTCAACTAACATACC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631808 119 -   3067355 CTGGCTTTCGTAGCCAATTCCAATACCTTCCCAGGTT-TT----AGGGATGACTCACCTCTTGGGTACTCTACG---GGAAAGTGA----TCTTCCAAAATTTTTT-CATTGTATTTTTCAACTAACATACC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072779 120 + 171630274 CTGGCTTTGGTAGCCAGCTCCACTACTTTCCCAGGTT-TT----ATGGATGACTCACCTCTCAGGTACTCTACA---GGGAAGCGA----CCTTCCAAAATTTTTTCCATTGTATTTCTCAGCAAACATACC
i calJac3.chr4             I 5 C 0
s saiBol1.JH378357           220336 119 -    242197 CTGGCTTTGGTAGCCAGCTCCACTACTTTCCCACATT-TT----ACAGATGACTCACCTCTCAGGTACTCTACA---GGGAAGCGA----CCTTCCAAAATTTTTT-CATTGTATTTTTCAGCAAACATACC
i saiBol1.JH378357         I 5 C 0
s cebCap1.NW_016107755v1     214082 119 -   1771730 CTGGCTTTGGTAGCCAGCTCCACTACTTTCCCAGGTT-TT----ACATATGACTCACCTCTCAGGTACTCTACA---GGGAAGCAA----CCTTCCAAAATTTTTT-CATTGTATTTTTCAGCAAACATACC
i cebCap1.NW_016107755v1   I 11 C 0
s aotNan1.NW_018509740v1     296053 119 -    457564 CTGGCTTTGGGAGCCAGCTCCACCACTTTCCCAGGTT-TT----ACAGATGACTCACCTCTCAGGTACTCTACA---GGGAAGCGA----CCTTCCAAAATTTTTT-CATTGTATTTTTCAGCAAACATACC
i aotNan1.NW_018509740v1   I 5 C 0
s micMur3.chr6                99696 120 + 123392446 CTGGCCTTCGCAGCCAGCTCCACTACTTCCCCAGGTTCCT----GAGGATGACTCACCTCTCAGGTATGCTCCA---GGGCAGTGA----CCTTCCAGGATCTTTT-CATTGGATTTTTCAGCTAAGAGACT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     593317 120 +    730504 CTGGCTTTGGCAGCCAGCTCTACTACTTCCCTAGGTTCTT----GAGGATGACTCACCTCTCAGGTACGCTCCA---GGGCAGTGA----CCTTCCAGAATCTTTT-CATTGTATTTTTCAGCTAAGAGGCC
i proCoq1.NW_012152574v1   C 0 I 69
s otoGar3.GL873550           107375 120 +  18854210 CTGGCTTTAGCAGCCAACTCCATTACTTCCCCATGTTCTT----AAGAATGTCTCATGTCACAGGTACTCTACA---AGGAAGTGA----CTTTCCAGAATTTTTT-CCTTGTATTGTTCAGCTAAGAGACC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57928758 121 -  94987271 CTGATTTTGGTAGCCTACTCCACTACCTT----GGTT-TCTGGAAAAAATGATTGTTTTCTT--GTCCTGTACA---GGGGAGTGAGTGGTTATCCAGTGTTTCTC-CACTGTCATTTTTAATTGAGGTAAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26225607 117 +  26524999 -TCACTTTGGGCACCAGTTCCTCTATTTCCTCAGGTC-TC----AGAGATGACTCACTACTCTGCTGCTCTACA---GGGATGTGA----TCCTTCAGAATTTTCC-CATTGTA-TTTTCAACCAAGATACC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            34354 109 +    102524 CTGCTCTCTGTTGCTAGCTCTGC-ACTCCCCCAGGTT-CT-------------------CCAGGGTGCCTTAAACATGGGAAATGC-CCCCCCCCCAGAGCCTTCC-CACTGCTTTCTCCAGCCAGGATGCC
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=831610.000000
s hg38.chr6_GL000254v2_alt   885262 71 +   4827813 TTAAAACATAGAGTCCATTTAGAATGTCCCAAAACAGTGTGTATCATCAGAGTCCATGTGGCAGCAGATCT
s panTro5.chr6             29848033 71 + 175400573 TTAAAACATAGAGTCCATTTAGAATGTCCCAAAACAGTGTGTATCATCAGAGTCCATGTGGCAGCAGATCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082397 71 + 173848474 TTAAAACATAGAGTCCATTTAGAATGTCCCAAAACAGTGTGTATCATCAGAGTCCATGTGGCAGCAGATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5889018 69 +   6154872 TTAAAAC--AGAGTCCATTTAGAATGTCCCAAAACAGTGTGTATCATCAGAGTCCATGTGGCAGCAGATCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30078290 71 + 172585720 TTAAAACATAGAGTCCACTTAGAATGTCCCAAAACAGTGTGTATGACCAGAGTCCATGTGGCAGCAGATCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29741140 71 - 170955103 TTAAAACATAGAGTCCACTTAGAATGTCCCAAAACAGTGTGTATGACCAGAGTCCATGTGGCAGCAGATCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789841 71 -   2996164 TTAAAACATAGAGTCCACTTAGAATGTCCCAAAACAGTGTGTATGACCAGAGTCCATGTGGCAGCAGATCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540896 71 +    766320 TTAAAACATAGAGTCCACTTAGAATGTCCCAAAACAGTGTGTATGACCAGAGTCCATGTGGCAGCAGATCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28996997 71 -  71996105 TTAAAACATAGAGTCCACTCAGAATGTCCCAAAACAGTGTGTATGACCAGAGTCCATGTGGCAGCAGATCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     173203 71 +    290775 TTAAAACATAGAGTCCACTTAGAATGTCCCAAAACAGTGTGTATGACCAGAGTCCATGTGGCAGCAGATCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631927 71 -   3067355 TTAAAACATAGAGTCCACTTAGAATGTCCCAAAACAGTGTGTATGACCAGAGTCCATGTGGCAGCAGATCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072899 70 + 171630274 TT-AAACATAAAGTCCGCTTAGAATGTCCCAGAGCCATATGTATGATCAGAGTCCATGCAGCAATGGATCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220455 70 -    242197 TT-AAACATAAAGTCCACTTAGAATGTCCCAGAGCAGTATGTATGATCAGAGTCCATGCAGCAATAGATCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     214201 70 -   1771730 TT-AAACATAAAGTCCACTTAGAATGTCCCAGAGCAGTATGTATGATCAGAGTCCATGCGGCAATAGATCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     296172 70 -    457564 TT-AAACATAAAGTCCCCTTAGAATGTCCCAGAGCAGTATGTATGATCAGAGTCCATGCGGCAACAGATCT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                99816 69 + 123392446 GT-AGGCATGGAGTCCCTTTAGAATTCCCCAGGACAGTGTCTGTGATCAGAGTCCACATGGCTACTGATC-
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           107495 70 +  18854210 TT-AAACATAGAGTCTCCTTAGAATGCCCCAGGATAGCATCTATAATCAGAGTCCACATGGCAACTGATCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57928879 70 -  94987271 TT-AAGCACAGCATCCTGCTAGAACATTGTAGAACACAGTTTATAGCCAGAATTCACATGGCAGCCCTCCT
i mm10.chr17               C 0 I 1
s canFam3.chr35            26225724 69 +  26524999 TT-AAATATAAAGTCC-CTTGGAATTTCCCAGGACAGGATCCACAATCAGAGTCCACTTGACAATGGACAC
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            34463 69 +    102524 TT-GAACACGGGGTCCCCTTAGAG-GTCCCAGGGCAGCGTCTGTGATCAGAGTCCACCCGGCCACCCACCT
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     593437 69 +    730504 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1148434.000000
s hg38.chr6_GL000254v2_alt   885333 87 +   4827813 TTCATCACAACACACCACCAGAGTCAACTTCCTAAATCTTATTTCTCCTTTGCTCAGCAATTGCCAGTAGCT--AAACAGTGTT--AGCAG
s panTro5.chr6             29848104 87 + 175400573 TTCATCACAACACACCACCAGAGCCAACTTCCTAAATCTTATTTCTCCTTTGCTCAGCAACTGCCAGTAGCT--AAACAGTGTT--AGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082468 87 + 173848474 TTCATCACAACACACCACCAGAGCCAACTTCCTAAATCTTATTTCTCCTTTGCTCAGCAACTGCCAGTAGCT--AAACAGTGTT--AGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5889087 87 +   6154872 TTCAtcacaacacaccaccagagtcaacttcctaaatcttatttctcctttgctcagcaactgccagtagct--aaacagtgtt--agcag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30078361 83 + 172585720 TTCATCACAACG---CACCAGAGTCAACTTCCTAAATCTTATTTCTCCTTTGCTCAGAAACTGCCAGTAGCT---AAAAGTGTT--AGCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29741211 87 - 170955103 TTCATCACAACGCACCACCAGAGTCAACTTCCTAAATCTTATTTCTCCTTTGCTCAGAAACTGCCAGTAGCT--AAAAAGTGTT--AGCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789912 87 -   2996164 TTCATCACAACGCACCACCAGAGTCAACTTCCTAAATCTTATTTCTCCTTTGCTCAGAAACTGCCAGTAGCT--AAAAAGTGTT--AGCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     540967 87 +    766320 TTCATCACAACACACCACCAGAGTCAACTTCCTAAATCTTATTTCTCCTTTGCTCAGAAACTGCCAGTAGCT--AAAAAGTGTT--AGCAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28997068 87 -  71996105 TTCATCACAACGCACCACCAGAGTCAACTTCCTAAATCTTATTTCTCCTTTGCTCAGAAACTGCCAGTAGCT--AAAAAGTGTT--AGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     173274 87 +    290775 TTCATCACAACACACCACCAGAGTCAACTTCCTAAATCTTATTTCTCCTTTGCTCAGAAACTGCCAGTAGCT--AAAAAGTGTT--AGCAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2631998 87 -   3067355 TTCATCACAACGCACCACCAGAGTCAACTTCCTAAATCTTATTTCTCCTTTGCTCAGAAACTGCCAGTAGCT--AAAAAGTGTT--AGCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30072969 86 + 171630274 CTCATCACAACACATCACCAGAGTCAACTACCTAAATCTTATTTCTCCTTTGCTCAGC-ACTGCCAGTGGCT--AAACAGTGTC--AGCGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220525 87 -    242197 TTCAtcacaacacatcaccagagtcaactacataaatcttatttctcctttgctcagcaactgccagtggct--AAACAGTGTT--AGCAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     214271 87 -   1771730 TTCATCACAACACATCACCAGAGTCAACTACATAAATCTTATTTCTCCTTTGCTCAGCAACTGCCAGTGGCT--AAGCAGTGTT--AGCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     296242 87 -    457564 TTCATCACAACACATCACCAGAGTCAACTACCTAAATCTTATTTCTCCTTTGTTCAGCAACTGCCAGTGGCT--AAACAGTGTT--AGCAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                99885 87 + 123392446 TCCATCACAATCCACCACCAGAACCAACTTCCCAAATCTTACTTCTCCCTTGCTGAAAAACTGCCACTGGCT--AAAAAGCTTT--AGGAG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     593506 87 +    730504 TCCATCACGATCCACCACCAGAACCCACTTCTCGAATCTTACTTCTCCCATGCTCAAAAACTGCCACTGGCT--AAAAAGTGTT--AGCAG
i proCoq1.NW_012152574v1   I 69 C 0
s otoGar3.GL873550           107565 88 +  18854210 -TCATCACAATCCACCACCGGAACCAACTAACTGAACCTTAGTTCTCCTTTGCTCAGAAACTGCTATCGGCT--ACATAGTATTTcagcag
i otoGar3.GL873550         C 0 I 143
s mm10.chr17               57928950 89 -  94987271 TTTACCATAACCTACTTCCAGAAGCAGATTCCCGAATCTCATTTCTGCTTTGATAAAACACCACCATTGCCTGAAAACAGAATT--TGCAC
i mm10.chr17               I 1 C 0
s canFam3.chr35            26225794 87 +  26524999 TCCAACACAATCCACTGCTAGAACAGACTGCCTGAACCATCTTCCTCCCTTGATCAAAAGCTTCCATCAGCT--GAACAGTGTT--AGCCA
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            34532 78 +    102524 -----TCCCACCCACGG--AAAAACACACTCCTGAGCCTCGTTTC-CCCTTGCTCCAAAACTGCC-TTGGCT--GACCCGCACT--GCCAG
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=31153.000000
s hg38.chr6_GL000254v2_alt   885420 2 +   4827813 AT
s panTro5.chr6             29848191 2 + 175400573 AT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082555 2 + 173848474 AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5889174 2 +   6154872 at
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30078444 2 + 172585720 AT
i rheMac8.chr4             C 0 I 308
s macFas5.chr4             29741298 2 - 170955103 AT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2789999 2 -   2996164 AT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     541054 2 +    766320 AT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28997155 2 -  71996105 AT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     173361 2 +    290775 AT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2632085 2 -   3067355 AT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30073055 2 + 171630274 AT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220612 2 -    242197 AT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     214358 2 -   1771730 AT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     296329 2 -    457564 AC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                99972 2 + 123392446 AT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     593593 2 +    730504 AT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           107796 2 +  18854210 AT
i otoGar3.GL873550         I 143 C 0
s mm10.chr17               57929039 2 -  94987271 AT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26225881 2 +  26524999 AC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            34610 2 +    102524 GT
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1780797.000000
s hg38.chr6_GL000254v2_alt   885422 128 +   4827813 AAAAGTACAAACTTTTTAGTCAGGCTTCATGGTTTTCCATGGGAAGTGATga-gcagagcagtttggagcc-agatttaactaggattcaattccagctggactgctgagtagctgcatgacctgagaca
s panTro5.chr6             29848193 129 + 175400573 AAAAGTACAAACTTTTTAGTCAGGCTTCATGGTTTTCCATGGGAAGTGATGAGGCagagcagtttggagtc-agatttaactaggattcaattccagctggactgctgagtagctgcatgacctgggaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082557 129 + 173848474 AAAAGTACAAACTTTTTAGTCAGGCTTCATGGTTTTCCATGGGAAGTGATGAGGCagagcagtttggagtc-agatttaactaggattcaattccagctggactgctgagtagctgcatgacctgggaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5889176 129 +   6154872 aaaagtacaaactttttagtcaggcttcatggttttccatgGGAAGTGATGAGGCagagcagtttggagtc-agatttaactaggattcaattccagctggactgctgagtagctgcatgacctgggaca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30078754 129 + 172585720 aaaaGTACAAACTTTTTAGTCAGGCTTTATAGTTTTCCATgcgaagtgatgaggcagagcagtttggagtc-agatttaactaggattcaactccagctggactgctgagtagctgcatgacctgagaca
i rheMac8.chr4             I 308 C 0
s macFas5.chr4             29741300 129 - 170955103 AAAAGTACAAACTTTTTAGTCAGGCTTTATAGTTTTCCATGCGAAGTGATGAGGCAGAGCAGtttggagtc-agatttaactaggattcaactccagctggactgctgagtagctgcatgacctgagaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2790001 129 -   2996164 AAAAGTACAAACTTTTTAGTCAGGCTTTATAGTTTTCCATgtgaagtgatgaggcagagcagtttggagtc-agatttaactaggattcaactccagctggactgctgagtagctgcatgacctgagaca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     541056 129 +    766320 AAAAGTACAAACTTTTTAGTCAGGCTTTATAGTTTTCCATGGGAAGTGATGAGGCAGAGCAGtctggagtc-agatttaactaggattcaactccagctggactgctgagtagctgcatgacctgagaca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28997157 129 -  71996105 AAAAGTACAAACTTTTTAGTCAGGCTTTATAGTTTTCCATGAGAAGTGATGAgacagagcagtttggagtc-agatttaactaggattcaactccagctggactgctgagtagctgcatgacctgagaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     173363 129 +    290775 AAAAGTACAAACTTTTTAGTCAGGCTTTATAGTTTTCCATGGGAAGTGATGAGGCAGAGCAGtctggagtc-agatttaactaggattcaactccagctggactgctgagtagctgcatgacctgagaca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2632087 129 -   3067355 AAAAGTACAAACTTTTTAGTCAGGCTTTATAGTTTTCCATGGGAAGTGATGAGGCAGAGCAGtttggagtc-aggtttaactaggattcaactccagctggactgcggagtagctgcatgacctgagaca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30073057 116 + 171630274 AGCAGTACAAACTTTTGAGTCAGGCTTTATGCTTTTCCAT-------------GCAGAGCAGtttggagtc-agatttaactaggattcaattccagctggactgctgagtagctgcgtgacctgggaca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220614 130 -    242197 AGAAGTACAAACTTTAGAGTCAGGCTTTATGCTTTTCCACGGGAAGTGATGAGGCAGAGCAGtttggagtcaagatttaactaagagtcaattccagctggactgctgagtagctgcgtgacctgggaca
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     214360 129 -   1771730 AGAAGTACAAACTTTTGAGTCAGGCTTTATGCTTTTCCATGGGAAGTGATGAGGCAGAGCAGtttggagtc-agatttaactaggattcaattccagctggactgctgagtagctgcgtgacctgggaca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     296331 128 -    457564 AGAAGTACAAACTTTTGAGTCAGGTTTCATGCTTTTCCATGGGAAGTGATGAGGCAGAGCAGtttggagtc-agatttaactagga-tcaattgcagctggactgctgagtagctgcgtgacctgggaca
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6                99974 129 + 123392446 AAAAGTACAAACTTTTTAGTCAGACTTCCTGGTTTTCCATGAGAagtgaggaggcagagcagtttggagtt-agatttaactagaattcgattccagctgaaccactcagtagctgcatgacctgggaca
i micMur3.chr6             C 0 I 93
s proCoq1.NW_012152574v1     593595 129 +    730504 AAAAATACAAATTTTTTAGTCAGGCTTCACGGTTTTCCATTAGAAGTCATGAGGCagagcagtttgtagtt-agatttaactaggattcaattccagctggaccactcggtagcttcatgacctgggaca
i proCoq1.NW_012152574v1   C 0 I 96
s otoGar3.GL873550           107798 124 +  18854210 AAAAGTACAAACTTTTTAGGCAGGCTTCACAGTTTTCTATGAaaagtgatgaggcagagtggtctgaaatt-agatttagccaggattcagttctagctagaccactcagtagctgcatgatcca-----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57929041 110 -  94987271 GAAGGTGTAAAGATTCTAGTCAGGCATTGTGCTTTGCCATGGGGAGGGATAAGGCAGAGCAGACTGGAGTT-----------------CAACTCCA-CAGGGC--ACGAGGagatgcataacccaggaca
i mm10.chr17               C 0 C 0
s canFam3.chr35            26225883 128 +  26524999 AAAGGCACAGACTCTTTAGTGGGATTTCATGGTTTTCCATGGAGGATgagaggacaaagtggtttggagtt-agactaaatgaggg-tcaagtctggtttcaccactgagcagttatggggcctgggcca
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            34612 123 +    102524 GAAAGCCCCAGCTCTCTAGCCGGGTCTCCCGGTTTTCCGTGGGAGGGCACT-GACAGAGTGGtttggagcc-acagacacggaggc----attccagcttggccactcagt-gctgcgggagccgggccg
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1327757.000000
s hg38.chr6_GL000254v2_alt   885550 140 +   4827813 agtcattaaa-ccactctgagtctcattttcctggtctacaaaatgta---gataagtccacatcagagttttgctgttagaatc--------------------cctgaaatca---------------------tgaatctaaGTACC---------ACA-------------------------CAAATGC----------------CACTGTTAGTA----AAAC---------------TT--TTTAAATC
s panTro5.chr6             29848322 140 + 175400573 agtcattaaa-ccactctgagtctcattttcctggtctacaaaatgta---gataagtccacatcagagttttgctgttaggatc--------------------cctgaaatca---------------------tgaatctaagtacc---------aca-------------------------taaatgc----------------caCTGTTAGTA----AAAC---------------TT--TTTAAATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082686 140 + 173848474 agtcattaaa-ccactctgagtctcattttcctggtctacaaaatgta---gataagtccacatcagagttttgctgttaggatc--------------------cctgaaatca---------------------tgaatctaagtacc---------aca-------------------------taaatgc----------------caCTGTTAGTA----AAAC---------------TT--TTTAAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5889305 140 +   6154872 agtcattaaa-ccactctgagtctcattttcctggtctacaaaatgta---gataagtccacatcagagttttgccgttaggatc--------------------cctgaaatca---------------------tgaatctaagtacc---------aca-------------------------taaatgc----------------caCTGTTAGTA----AAAC---------------TT--TTTAAATC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30078883 143 + 172585720 agttattaaa-ccactctgagtctcattttcctggtctacaaaatgtaaataataagtccatatcagagtattgctgttaggatc--------------------cctgaaatca---------------------tgaatctaagctcc---------aca-------------------------taaatgc----------------cACTGTTAGTA----AAAC---------------TT--TTTAAACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29741429 143 - 170955103 agttattaaa-ccactctgagtctcattttcctggtctacaaaatgtaaataataagtccgtatcagagtattgctgttaggatc--------------------cctgaaatca---------------------tgaatctaaGCTCC---------ACA-------------------------TAAATGC----------------CACTGTTAGTA----AAAC---------------TT--TTTAAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2790130 144 -   2996164 agttattaaacccactctgagtctcattttcctggtctacaaaatgtaaataataagtccatatcagagtattgctgttaggatc--------------------cctgaaatca---------------------tgaatctaagctcc---------aca-------------------------taaatgc----------------cACTGTTAGTA----AAAC---------------TT--TTTAAATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     541185 143 +    766320 agttattaaa-ccactctgagtctcattttcctggtctacaaaatgtaaataataagtccatatcagagtattgctgttaggatc--------------------cctgaaatca---------------------tgaatctaagctcc---------aca-------------------------taaatgc----------------cACTGTTAGTA----AAAC---------------TT--TTTAAATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28997286 143 -  71996105 agtcattaaa-ccactctgagtctcattttcctggtctacaaaatgtaaataataagtccgtatcagaatattgctgttaggatc--------------------cctgaaatca---------------------tgaatctaaGCTCC---------ACA-------------------------TAAATGC----------------CACTGTTAGTA----AAAC---------------TT--TTTAAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     173492 143 +    290775 agttattaaa-ccactctgagtctcattttcctggtctacaaaatgtaaataataagtccatatcagagtattgctgttaggatc--------------------cctgaaatca---------------------tgaatctaaGCTCC---------ACA-------------------------TAAATGC----------------CACTGTTAGTA----AAAC---------------TT--TTTAAATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2632216 143 -   3067355 agtcattaaa-ccactctgagtctcattttcctggtctacaaaatgtaaataataagtccatatcagagtattgctgttaggatc--------------------cctgaaatca---------------------tgaatctaagctcc---------aca-------------------------taaatgc----------------cACTGTTAGTA----AAAC---------------TT--TTTAAATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30073173 143 + 171630274 agtcattaaa-ccactctgagtctcaatttcctggtctacaaaatgtaaatgataagtccacatcagagtattgctgttaggatc--------------------cctgaaatca---------------------tgaatctaaGATCC---------ACA-------------------------TAAAAGC----------------CACTGTTCCTA----AAAC---------------TT--TTTTAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220744 143 -    242197 agtcatcaaa-ctactctgagtctcaatttcctggtctacaaaatgtaaatggtaagtccacatcagagtattgctgttaggatc--------------------cctgaaatca---------------------tgaatctaaGCTCC---------ATA-------------------------TAAAAGC----------------CACTGTTACTA----AAAC---------------AT--TTTTAAAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     214489 143 -   1771730 agtcattaaa-ccactctgagtctcaatttcctggtctacaaaatgtaaatggtaagtccacatcagagtattgctgttaggatc--------------------cctgaaatca---------------------tgaatctaaGCTCC---------ATA-------------------------TAAAAGC----------------CATTGTTACTA----AAAC---------------AT--TTTTAAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     296459 143 -    457564 agtcattaaa-ccactctgagtctcaatttcctggtctacaaaatgtaaatgataagtccacatcagagtatagctgttaggatc--------------------cctgaaatca---------------------tgaatctaaGCTCC---------ATA-------------------------TAAAAGC----------------CACTGTTACTA----AAAC---------------TT--TTTTAAAT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           107922 225 +  18854210 agatattaaa-cttctctga--------------gtctataaaatataaatgataaatctacatcaaagtattcctgttaagGGCGGGACACAACTACAACAGGGACTAAAACTAACAAACGGAAACACTATAACCTAAATCTTACACCC---------TCAAATTAACTGAAAAAGAAAAAGAAATTAAAAACAACAAAGTATTCCTATTACGATTACTA----AAATCATGTCTTTAAGACATT--TTTCAAT-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57929151 128 -  94987271 tgtcactaaa-ccttcctg-gttccaattttttagctcataagatagaaataacaaatctattttagagtattgctgttaagatc---------------------cagaaatta---------------------tacaCCAAATATCC-------------------------------------TGATTTT----------------CCTCATAAAAA----AATC---------------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26226011 150 +  26524999 tgtcacttga-cctctctg--tgtcagtctcctggtctacagaatggaaatgacaaccccatatcagagcatggctg-gaggatc--------------------actgaaacca---------------------tgtacctaaactcctggcttaccaca-------------------------CAAAAGC----------------AATCATTAGTA----CATT---------------TTTGTTTTAAT-
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            34735 131 +    102524 agctgcccca-ctgctccg----------tcctggtctgtgaactggacatggcgagtctacctcagggccttgctg---gggtc--------------------acacaagtca---------------------catacataagctcc-tggTTACTACG-------------------------TGAAAGA----------------AACTGCCATCACACGAAG----------------------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               100103  93 + 123392446 I
e proCoq1.NW_012152574v1     593724  96 +    730504 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1099972.000000
s hg38.chr6_GL000254v2_alt   885690  90 +   4827813 AAGCTATTTTGGGGCTTTACAACCATTAACTCACCCCTAACATGCTCTCCAAAGCAGG-----TA---------------CACA-C-------------------TTGGT-GTAATAAGCAGACACATAGG
s panTro5.chr6             29848462  90 + 175400573 AAGCTATTTTGGGGCTTTACAACCATTAACTCACCCCTAACATGCTCTCCAAAGCAGG-----TA---------------CACA-C-------------------TTGGT-GTAATAAGCAGACACATAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082826  90 + 173848474 AAGCTATTTTGGGGCTTTACAACCATTAACTCACCCCTAACATGCTCTCCAAAGCAGG-----TA---------------CACA-C-------------------TTGGT-GTAATAAGCAGACACATAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5889445  90 +   6154872 AAGCTATTTTGGGGCTTTACAACCATTAACTCACCCCTAACATGCTCTCCAAAGCAGG-----TA---------------CACA-C-------------------TTGGT-GTAATAAGCAGACACATAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30079026  90 + 172585720 AAGCTATTTGGGGGCTTTACAGCCATTAACTCACCCCTAGCATGTTCTCCAAAGCAGG-----TA---------------CACA-C-------------------TTGGT-ATAATAAGTAGACACATAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29741572  90 - 170955103 AAGCTATTTGGGGGCTTTACAACCATTAACTCACCCCTAGCATGTTCTCCAAAGCAGG-----TA---------------CACA-C-------------------TTGGT-ATAATAAGTAGACACATAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2790274  90 -   2996164 AAGCTATTTGGGGGCTTTACAGCCATTAACTCACCCCTAGCATGTTCTCCAAAGCAGG-----TA---------------CACA-C-------------------TTGGT-ATAATAAGTAGACACATAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     541328  90 +    766320 AAGCTATTTGGGGGCTTTACAACCATTAACTCACCCCTAGCATGTTCTCCAAAGCAGG-----TA---------------CACA-C-------------------TTGGC-ATAATAAGTAGACACACAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28997429  90 -  71996105 AAGCTATTTGGGGGCTTTACAACCATTAACTCACCCCTAGCATGTTCTCCAAAGCAGG-----TA---------------CACA-C-------------------TTGGT-ATAATAAGTAGACACACAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     173635  90 +    290775 AAGCTATTTGGGGGCTTTACAACCATTAACTCACCCCTAGCATGTTCTCCAAAGCAGG-----TA---------------CACA-C-------------------TTGGT-ATAATAAGTAGACACACAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2632359  89 -   3067355 AAGCTATTTGGGGGCTTTACAACCATTAACTCA-CCCTAGCATGTTCTCCAAAGCAGG-----CA---------------CACA-C-------------------TTGGT-ATACTAAGCAGACACATAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30073316  90 + 171630274 AAGCTGTTTGAAGGCTTTACAACCATTAACTCAACCCTAGCACACTCTCCAAAGCAGG-----TA---------------CACA-T-------------------TTAGT-ATTATAAGCAGACACATCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220887 109 -    242197 AAGCCGTTAGAAGGCTTTACAACCATTAACTCAACCCTAGCACACTCTCCAAAGCAGG-----TA---------------CACA-TTTAGTATTATAAGCAACACTTAGT-ATTATAAGCAGACACGTAAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     214632 109 -   1771730 AAGCTGTTTGAAGGCTTTACAACCATTAACTCAACCCTAGCACACTCTCCAAAGCAGG-----TA---------------CACA-TTTAGTATTATAAGCAACACTTGGT-ATTATAAGCAGACACGTAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     296602 109 -    457564 AAGCTGTTTGAAGGCTTTACAACCATTAACTCAACACTAGCACACTCTCCAAAGCAGG-----TA---------------CACA-TTTAGTATTATAAGCAACACTTAGT-ATTATCAGCAGACACATAAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               100196  90 + 123392446 AAGCCATTTGGGAGCTTCACGACCATTAAGTCACGCCTAGCATGTGCTCCACAGCAGG-----TA---------------TGCA-C-------------------TGGGT-GTAATAGGCAGACACACAGG
i micMur3.chr6             I 93 I 104
s proCoq1.NW_012152574v1     593820  90 +    730504 aagctatTTGGGAACTTTACACTCATTAACTCAACCCTAGCAAGCTCTCCAAAGCAGG-----TA---------------TACA-C-------------------TTGGT-GTAGTAAGCAGACACACAGG
i proCoq1.NW_012152574v1   I 96 C 0
s otoGar3.GL873550           108147  90 +  18854210 AAGCTACTTGAAAGTTTTACAACCATCAACTCACCACTAGCATGCTTTCCAAAACAGA-----TA---------------TACT-C-------------------TTGGT-GTAATAAGCAGACAGATAAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57929279  77 -  94987271 -AGCCATTA-------TTACAATCATTAGTTCACCCCT---------CTGAAAGCTGATTTTTTT---------------CACA-G-------------------CTGGA-GTTAC-ATTAGGTACACAGG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26226161 105 +  26524999 GAGATATTT-GGGGCTTTACAACCATTAACTCACCCCCGGCATGCTTTCCAAAACTAG-----TATTCCAGACCCAGAACTACA-T-------------------CTGGTAATAATGAGCAGACATGCAGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            34866  77 +    102524 AAGCTGTCTGCGGGCTTTCCTACCA--------------GCGTGCTCTCCGCGCCAGG-----GA---------------CGGAGC-------------------TCCGT-GTAGGACGCCCATACACGCT
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=14972.000000
s hg38.chr6_GL000254v2_alt   885780 1 +   4827813 T
s panTro5.chr6             29848552 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082916 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5889535 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30079116 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29741662 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2790364 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     541418 1 +    766320 T
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28997519 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     173725 1 +    290775 T
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2632448 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30073406 1 + 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220996 1 -    242197 T
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     214741 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     296711 1 -    457564 T
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     593910 1 +    730504 T
i proCoq1.NW_012152574v1   C 0 I 435
s otoGar3.GL873550           108237 1 +  18854210 T
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57929356 1 -  94987271 T
i mm10.chr17               C 0 C 0
s canFam3.chr35            26226266 1 +  26524999 C
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            34943 1 +    102524 T
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               100286 104 + 123392446 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=926597.000000
s hg38.chr6_GL000254v2_alt   885781  98 +   4827813 GGCCGTATCGAGCTTACCCAAAATTC-CTGTACTCTTTACAATGT-AGTGCTGAGCAACAAAGAAGCCTCTTCCCC-TG-TGCCCACACCCACACTCACTTC
s panTro5.chr6             29848553  98 + 175400573 GGCCGTATCGAGCTTACCCAAAATTC-CTGTACTCTTTACGATGT-AGTGCTGAGCAACAAAGAAGCTTCTTCCCC-TA-CGCCCACACCCACACTCACTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30082917  98 + 173848474 GGCTGTATCGAGCTTACCCAAAATTC-CTGTACTCTTTACGATGT-AGTGCTGAGCAACAAAGAAGCTTCTTCCCC-TA-CGCCCACACCCACACTCACTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5889536  98 +   6154872 GGCCGTATCGAGCTTACCCAAAATTC-CTGTACTCTTTACAATGT-AGTGCTGAGCAACAAAGAAGCCTCTTCCCC-TA-CGCCCACACCCACACTCACTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30079117  98 + 172585720 GGACATATCGAGCTTATCCCAAATTC-CTGTACTCTTCACAATGT-AGTGCTGAGCGACAAAGAAGCCTCTTCCCC-TA-CGCCCACGCCCACACTCACTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29741663  98 - 170955103 GGACATATCGAGCTTATCCCAAATTC-CTGTACTCTTCACAATGT-AGTGCTGAGCGACAAAGAAGCCTCTTCCCC-TA-CGCCCACGCCCACACTCACTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2790365  98 -   2996164 GGACATATTGAGCTTATCCCAAATTC-CTGTACTCTTCACAATGT-AGTGCTGAGCGACAAAGAAGCCTCTTCCCC-TA-CGCCCACGCCCACACTCACTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     541419  98 +    766320 GGACGTATCGAGCTTATCCCAAATTC-CTGTACTCTTTACAATGT-AGTGCTGAGCAACAAAGAAGCCTCTTCCCC-TA-CGCCCACGCCCACACTCACTTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28997520  98 -  71996105 GGACGTATCAAGCTTATCCCAAATTC-CTGTACTCTTTACAATGT-AGTGCTGAGCAACAAAGAAGCCTCTTCCCC-TA-CGCCCACGCCCACACTCACTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     173726  98 +    290775 GGACGTATCGAGCTTATCCCAAATTC-CTGTACTCTTTACAATGT-AGTGCTGAGCAACAAAGAAGCCTCTTCCCC-TA-CGCCCACGCCCACACTCACTTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2632449  98 -   3067355 GGACGTATCGAGCTTATCCCAAATTC-CTGTACTCTTTACAATGT-ACTGTTGAGCAGTAAAGCAGCCTCTTCCCC-TA-CGCCTACACCCACACTCACTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30073407  98 + 171630274 GGCCATATCAAGCTTACCCCAAATTC-CTTTACTCATTATGATGT-CATGCTGAGCAACAAAGAAGCCTCCTCCCC-TA-CGCCCACACCCACACTCACTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           220997  98 -    242197 GGCCATATCAAGCTTACCCCAAATTC-CTTTACTCATTATGATGT-CGTACTGAGCAACAAGGATGCCTCCTCCCC-TA-CGCCCACACCCACACTCACTTG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     214742  98 -   1771730 GGCCATATCAAGCTTACCCCAGATTC-CTTTACTCATTATGATGT-CATGCTGAGCAACAAAGAAGCCTCCTCCCC-TA-CGCCCACACCCACACTCACTTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     296712  98 -    457564 GGCCATATCAAGCTTATCCCAAATTC-CTTTACTCATTATGATGT-CATGCTGAGCAACAAAGAAGCCTCCTCCCC-TA-CGCCCACACCCACACTCACTTG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           108238 100 +  18854210 TCCCCCATCAAGCTCAGCCAAAAATCTCTGAACTCTTTAAGGTGC-AGTGCTAAATAAGAAAGGAACCTCTTCCTC-CACCACCCACACCCATATGTACTTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57929357  90 -  94987271 TACGCTACTGAACT--ATAGAGATCC-CTGCACTGTG---GATGTGGGTGCTGTGCAGCAAGGA--TCTCCTCCTCACA-CATCCACACCCATGCTCAT---
i mm10.chr17               C 0 C 0
s canFam3.chr35            26226267  85 +  26524999 TGCCTTAT-AAGCTTGCTGGAGATTC-CTGCATTCTTTCAGGTGT-AATAATGAGCAAGAAAGGAGCCCTGACCCT-CA-CACTCACGCC------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            34944  80 +    102524 -AGCCCAGTGCATCTGGCCCCAGCCT-CTGTGCCCTCTAAGACAA-GGTGCTGAGCCGGA-------CCCCTCGCC-T--CACCTGGGCCCAC---------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               100286 104 + 123392446 I
e proCoq1.NW_012152574v1     593911 435 +    730504 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=298956.000000
s hg38.chr6_GL000254v2_alt   885879 22 +   4827813 TGCCCCTCAGCTGCAGGGCTGC
s panTro5.chr6             29848651 22 + 175400573 TGCCCCTCAGCTGCAGGGCTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30083015 22 + 173848474 TGCCCCTCAGCTGCAGGGCTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5889634 22 +   6154872 TGCCCCTCAGCTGCAGGGCTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30079215 22 + 172585720 TGCCCCTCAGCTGCAGGACTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29741761 22 - 170955103 TGCCCCTCAGCTGCAGGACTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2790463 22 -   2996164 TGCCCCTCAGCTGCAGGACTGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     541517 22 +    766320 TGCCCCTCAGCTGCAGGACTGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28997618 22 -  71996105 TGCCCCTCAGCTGCAGGACTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     173824 22 +    290775 TGCCCCTCAGCTGCAGGACTGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2632547 22 -   3067355 TGCCCCTCAGCTGCAGGGCTGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30073505 22 + 171630274 TGCCCCTCAGCTGCAGGGCTGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           221095 22 -    242197 TGCCCCTCAGCTGCAAGGCTGC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     214840 22 -   1771730 TGCCCCTCAGCTGCAGGGCTGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     296810 22 -    457564 TGCCCCTCAGCTGCAGGGCTGC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     594346 22 +    730504 TGCCCCGCATCTGCAGGGCTGC
i proCoq1.NW_012152574v1   I 435 C 0
s otoGar3.GL873550           108338 22 +  18854210 TGTCCCTCATCTGCAAGGCCAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57929447 20 -  94987271 --CACCCCACACACAGGGCTAC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26226352 12 +  26524999 ----------CTGCAGGGCCGC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            35024 12 +    102524 ----------CTGCAGGGCCGC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               100286 104 + 123392446 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=4848555.000000
s hg38.chr6_GL000254v2_alt   885901 350 +   4827813 CCCAGCCCTCTCAAATCA-------GAGAATGCGCCTCCTCGCTCCAAGT--CTGTCATT-AACCAGCTGTCTGGGGCTAAATGATTTCAAAAGCCCCTTCTCCACATAAAATTCT-AAAAAAAGA----------------------------------------------------------------------------------------ATCATTAAAA-A------------------------------------------------------------------------------AAGCAACAGGATCC---------------AAGCTAATTGCATATCA------------ATCATGAGT----------------------------------------------------------------------GAATATTAAGCAA--CTCTAAAACACTAACA-TAAATCA---CCAAGAAAATGA------------------------------------AATGCAATTCT-GCCCAGACACAGTGCTCCTGTAAAGGTGT-GCTTGAGTATACAAGCATCCATATTATCATTAATGC--CGGT-TCCTC--CT---GACTTCTCACCAACTGCTCCTCGTCTCCATGGTAACAGCCCTTCC-ACTC
s panTro5.chr6             29848673 350 + 175400573 CCCAGCCCTCTCAAATCA-------GAGAATGCGCCTCCTCGCTCCAAGT--CTGTCATT-AACCAGCTGTCTGGGGCTAAATGATTTCAAAAGCCCCTTCTCCACATAAAATTCT-AAAAAAAGA----------------------------------------------------------------------------------------ATCATTAAAA-A------------------------------------------------------------------------------AAGCAACAGGATCC---------------AAGCTAATTGCATATCA------------ATCATGAGT----------------------------------------------------------------------GAATATTAAGCAA--CTCTAAAATACTAACA-TAAGTCA---CCAAGAAAATGA------------------------------------AATGCAATTCT-GCCCAGACACAGTGCTCCTGTAAAGGTGT-GCTTGCGTATACAAGCATCCATATTATCATTAACGC--CGGT-TCCTC--CT---GACTTCTCACCAACTGCTCCTCATCTCCATGGTAACAGCCCTTCC-ACTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30083037 350 + 173848474 CCCAGCCCTCTCAAATCA-------GAGAATGCGCCTCCTCGCTCCAAGT--CTGTCATT-AACCAGCTGTCTGGGGCTAAATGATTTCAAAAGCCCCTTCTCCACATAAAATTCT-AAAAAAAGA----------------------------------------------------------------------------------------ATCATTAAAA-A------------------------------------------------------------------------------AAGCAACAGGATCC---------------AAGCTAATTGCATATCA------------ATCATGAGT----------------------------------------------------------------------GAATATTAAGCAA--CTCTAAAATACTAACA-TAAGTCA---CCAAGAAAATGA------------------------------------AATGCAATTCT-GCCCAGACACAGTGCTCCTGTAAAGGTGT-GCTTGCGTATACAAGCATCCATATTATCATTAACGC--CGGT-TCCTC--CT---GACTTCTCACCAACTGCTCCTCATCTCCATGGTAACAGCCCTTCC-ACTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5889656 351 +   6154872 CCCAGCCCTCTCAAATCA-------GAGAATGCGCCTCCTCGCTCCAAGT--CTGTCATT-AACCAGCTGTCTGGGGCTAAATGATTTCAAAAGCCCCTTCTCCACATAAAATTCT-AAAAAAAGA----------------------------------------------------------------------------------------ATCATTAAAA-A------------------------------------------------------------------------------AAGCAACGGGATCC---------------AAGCTAATTGCATATCA------------ATCATGAGT----------------------------------------------------------------------GAATATTAAGCAA--CTCTAAAATACTAACATTAAGTCA---CTACGAAAATAA------------------------------------AATGCAATTCT-GCCCAGACACAGTGCTCCTGTAAAGGTGT-GCTTGCGTATACAAGCATCCATATTATCATTAACGC--CGGT-TCCTC--CT---GACTTCTCACCAACTGCTCCTCGTCTCCATGGTAACAGCCCTTCC-ACTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30079237 350 + 172585720 CCCAGCCCTCCCAAATCA-------GAGAATGCGCCTGCTCGCTCCAAGT--CTGTCATT-AACCAGCTGTCTGGGGCTAAATGATTTCAAAAGCCCCTTCTCCATATAAAATTCT-AAAAAAAGA----------------------------------------------------------------------------------------ATCATTAAAA-A------------------------------------------------------------------------------AAGCAACAGGATCC---------------AAGCTAATTGCATATCA------------ATCATGAGT----------------------------------------------------------------------GAATATTAAGCAA--CTCTAAAGTACTAACG-TAAATCA---CCAAGAAAATAA------------------------------------AATGCAATCCT-GCCCAGACACAGCGCTCCTGTAAAGGTGT-GCTTGCGTATAC-AGCATCCATATTATC-TTAACGC--CGGT-TCCTCCTCT---GACTTCTCACCAACTGCTCCTCGTCTCCATGGTAACAGCCCTTCC-ACTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29741783 350 - 170955103 CCCAGCCCTCCCAAATCA-------GAGAATGCGCCTGCTCGCTCCAAGT--CTGTCATT-AACCAGCTGTCTGGGGCTAAATGATTTCAAAAGCCCCTTCTCCATATAAAATTCT-AAAAAAAGA----------------------------------------------------------------------------------------ATCATTAAAA-A------------------------------------------------------------------------------AAGCAACAGGATCC---------------AAGCTAATTGCATATCA------------ATCATGAGT----------------------------------------------------------------------GAATATTAAGCAA--CTCTAAAGTACTAACG-TAAATCA---CCAAGAAAATAA------------------------------------AATGCAATCCT-GCCCAGACACAGCGCTCCTGTAAAGGTGT-GCTTGCGTATAC-AGCATCCATATTATC-TTAACGC--CGGT-TCCTCCTCT---GACTTCTCACCAACTGCTCCTCGTCTCCATGGTAACAGCCCTTCC-ACTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2790485 350 -   2996164 CCCAGCCCTCCCAAATCA-------GAGAATGCGCCTGCTCGCTCCAAGT--CTGTCATT-AACCAGCTGTCTGGGGCTAAATGATTTCAAAAGCCCCTTCTCCATATAAAATTCT-AAAAAAAGA----------------------------------------------------------------------------------------ATCATTAAAA-A------------------------------------------------------------------------------AAGCAACAGGATCC---------------AAGCTAATTGCATATCA------------ATCATGAGT----------------------------------------------------------------------GAATATTAAGCAA--CTCTAAAGTACTAACG-TAAATCA---CCAAGAAAATAA------------------------------------AATGCAATCCT-GCCCAGACACAGCGCTCCTGTAAAGGTGT-GCTTGCGTATAC-AGTATCCATATTATC-TTAACGC--CGGT-TCCTCCTCT---GACTTCTCACCAACTGCTCCTCGTCTCCATGGTAACAGCCCTTCC-ACTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     541539 351 +    766320 CCCAGCCCTCCCAAATCA-------GAGAACGCGCCTGCTCGCTCCAAGT--CTGTCATT-AACCAGCTGTCTGGGGCTAAATGATTTCAAAAGCCCCTTCTCCATATAAAATTCT-AAAAAAAGA----------------------------------------------------------------------------------------ATCATTAAAA-A------------------------------------------------------------------------------AAGCAACAGGATCC---------------AAGCTAATTGCATATCA------------ATCATGAGT----------------------------------------------------------------------GAATATTAAGCAA--CTCTAAAGTACTAACG-TAAATCA---CCAAGAAAATAA------------------------------------AATGCAATCCT-GCCCAGACACAGCGCTCCTGTAAAGGTGT-GCTTGCGTATAC-AGCATCCATATTATCATTAACGT--CGGT-TCCTCCTCT---GACTTCTCACCAACTGCTCCTCGTCTCCATGGTAACAGCCCTTCC-ACTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28997640 351 -  71996105 CCCAGCCCTCCCAAATCA-------GAGAATGCGCCTGCTCGCTCCAAGT--CTGTCATT-AACCAGCTGTCTGGGGCTAAATGATTTCAAAAGCCCCTTCTCCATATAAAATTCT-AAAAAAAGA----------------------------------------------------------------------------------------ATCATTAAAA-A------------------------------------------------------------------------------AAGCAACAGGATCC---------------AAGCTAATTGCATATCA------------ATCATGAGT----------------------------------------------------------------------GAATATTAAGCAA--CTCTAAAGTACTAACG-TAAATCA---CCAAGAAAATAA------------------------------------AATGCAATCCT-GCCCAGACACAGTGCTCCTGTAAAGGTGT-GCTTACGTATAC-AGCATCCATATTATCATTAACGC--CGGC-TCCTCCTCT---GACTTCTCACCAACTGCTCCTCGTCTCCATGGTAACAGCCCTTCC-ACTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     173846 351 +    290775 CCCAGCCCTCCCAAATCA-------GAGAACGCGCCTGCTCGCTCCAAGT--CTGTCATT-AACCAGCTGTCTGGGGCTAAATGATTTCAAAAGCCCCTTCTCCATATAAAATTCT-AAAAAAAGA----------------------------------------------------------------------------------------ATCATTAAAA-A------------------------------------------------------------------------------AAGCAACAGGATCC---------------AAGCTAATTGCATATCA------------ATCATGAGT----------------------------------------------------------------------GAATATTAAGCAA--CTCTAAAGTACTAACG-TAAATCA---CCAAGAAAATAA------------------------------------AATGCAATCCT-GCCCAGACACAGCGCTCCTGTAAAGGTGT-GCTTGCGTATAC-AGCATCCATATTATCATTAACGT--CGGT-TCCTCCTCT---GACTTCTCACCAACTGCTCCTCGTCTCCATGGTAACAGCCCTTCC-ACTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2632569 351 -   3067355 CCCAGCCCTCCCAAATCA-------GAGAATGCGCCTGCTCGCTCCAAGT--CTGTCATT-AACCAGCTGTCTGGGGCTAAATGATTTCAAAAGCCCCTTCTCCATATAAAATTCT-AAAAAAAGA----------------------------------------------------------------------------------------ATCATTAAAA-A------------------------------------------------------------------------------AAGCAACAGGATCC---------------AAGCTAATTGCATATCA------------ATCACGAGT----------------------------------------------------------------------GAATATTAAGCAA--CTCTAAAGTACTAACG-TAAATCA---CCAAGAAAATAA------------------------------------AATGCAATCCT-GCCCAGACACAGCGCTCCTGTAAAGGTGT-GCTTGCGTATAC-AGCATCCATATTATCATTAACGC--CGGT-TCCTCCTCT---GACTTCTCACCAACTGCTCCTCGTCTCCATGGTAACAGCCCTTCC-ACTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30073527 357 + 171630274 CCCAGCCCTCCCAAATCA-------GAGAATGCGCCTCCTCACTCCAAGT--CTGTCATT-AACCAGCTGTCTGGGGCTAAATGATTTCAAAAGCCCCTTCTCCACATAAAATTCTAAAAAAAAGA----------------------------------------------------------------------------------------ATCATTTAAA-A------------------------------------------------------------------------------AAGCATCAGGATCC---------------AAGCTAATTGCATATCA------------ATCATGAGT----------------------------------------------------------------------GAATATTAAGCAA--CTCTAAAGTACTAACG-TAAGTCG---CCAAGAAAATAA------------------------------------ATTGCAATTCTGGCCCAGACACAGTGCTCCTGAAAAGGTGTGGCTTGCGAATACAAGCGTCCATATTATCA-TAACGC--CTGT-TTCCTCCCTCTGGACTTCTCACCAACTGCTTCTCGTCT-CATGGAAACAGCCCCTCCTGCTA
i calJac3.chr4             C 0 I 974
s saiBol1.JH378357           221117 352 -    242197 CCCAGCCCTCCCAAATCA-------GAGAATGCGCCTCCTCACTCCAAGT--CTGTCATT-AACCAGCTGTCTGGGGCTAAATGATTTCAAAAGCCCCTTCTCCACATAAAATTCT-AAAAAAAGA----------------------------------------------------------------------------------------ATCATTAAAA-A------------------------------------------------------------------------------AAGCATCAGGATCC---------------AAGCTAATTGCTTATCA------------ATCATGAGT----------------------------------------------------------------------GAATATTAAGCAA--CTCTGAAATACTAACG-TAAGTCA---CCAAGAAAATAA------------------------------------AATGCAATTCT-GCCCAGACACAGTGCTCCTGTAAAGGTGT-GCTTGCATATACAAGCGTCCATATTATCATTAACGC--CTGT-TCCTCCTCT---GACTTCTCACCAACTGCTCCTCGTCTCCATGGTAACAGCCCTTCC-ACTA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     214862 352 -   1771730 CCCAGCCCTCCCAAATCA-------GAGAATGCGCCTCCTCACTCCAAGT--CTGTCATT-AACCAGCTGTCTGGGGCTAAATGATTTCAAAAGCCCCTTCTCCACATAAAATTCT-AAAAaaaga----------------------------------------------------------------------------------------atcattaaaa-a------------------------------------------------------------------------------aagcatcagaatcc---------------aagctaattgcatatca------------atcatgagt----------------------------------------------------------------------gaatatcaagcaa--ctctgaagtactaacg-taagtca---ccaagaaaataa------------------------------------aatgcaattCT-GCCCAGACACAGTGTTCCTGTAAAGGTGT-GCTTGCGTATACAAGCGTCCATATTATCATTAACGC--CTGT-TCCTCCTCT---GACTTCTCACCAACTGCTCCTTGTCTCCGTGGTAACAGCCCTTCC-ACTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     296832 352 -    457564 CCCAGCCCTCCCAAATCA-------GAGAATGCGCCTCCTCACTCCAAGT--CTGTCATT-AACCAGCTGTCTGGGGCTAAATGATTTCAAAAGCCCCTTCTCCACATAAAATTCT-AAAAaaaga----------------------------------------------------------------------------------------atcattaaaa-a------------------------------------------------------------------------------aagcatcaggatcc---------------aagctaattgcatatca------------atcatgagt----------------------------------------------------------------------gaatattaagcaa--ctctgaagtactaacg-taagtca---ccaagaaaataa------------------------------------aatgcaattCT-GCCCAGACACAGTGCTCCTGTAAAGGTGT-ACTTGCGTATACAAGCGTCCATATTATCATTAACGC--CTGT-TCCTCCTCT---GACTTCTCACCAACTGCTCCTCGTCTCCATGGTAACAGCCCTTCC-ACTA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               100390 352 + 123392446 CCCAGCCCTCCCAAATCA-------GAGGGTGCATCTTCTAGCTCCAAGT--CTCTCATT-AACCAGTGCTCTGggactaaatgatttc-aaaatccctgctaaatctaaaattct-AAAAAAGGA----------------------------------------------------------------------------------------ATCAGTAAAAGA------------------------------------------------------------------------------AAGCATCAGGATTC---------------AAACTAACTGCCTATCA------------GTCATGAGT----------------------------------------------------------------------GAATATCAAGCAA--CTCTGAAGTGCTAACG-TAAGTCA---CCAAGAAAATAA------------------------------------AACACATTTCC-GCCCGCAAACGGTGCTCCCATAAAGGTGT-GCTTGCAGACGCAAGCATCCATGTTATCATTAACAC--CTCT-TCTTCCCGA---GACTTCTCACCAGCCTCTCCTCGTCTCCATGGTAACAGCCCTACC-ACTC
i micMur3.chr6             I 104 C 0
s proCoq1.NW_012152574v1     594368 351 +    730504 CCCAGCCCTCTCAAATCA-------GAGGATGGACCTTCTAGCTCCAAGT--CTGTCATT-AACCTATGGTCTGGGGCTAAACGATTTC-AAAGTCCCTGCTACATCTAAAATTCT-AAAAaaaga----------------------------------------------------------------------------------------atcactaaaaga------------------------------------------------------------------------------aagcatcaggatcc---------------aaactaattgcgtatca------------gtcacgagt----------------------------------------------------------------------gaatattaagcag--ttctgaagtactaacg-taagtca---ccaagaaaataA------------------------------------AACACATTTCT-GCCCGC-AACAGTGCTCCTGTAAAGGTGT-GCTTGCAAATACAAGCATCCATGGTATCATTAACGC--CTCT-TCCTCATGT---GACTTCTCGCCAACTGCTCCTCGTCTCCATGGTAACAGCCCTGCC-ACTC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           108360 350 +  18854210 -CCAGCCCTCCCAAATCA-------GAGGATGCACCTTCTAGCTCCAAGT--CTGTCATT-AACCAGTTCTCAAgggctaaatgatttc-aaagtcccttccacatctaaaattct-aAAAAAGGA----------------------------------------------------------------------------------------ATCAGTAAAA-A------------------------------------------------------------------------------AAGCATCAGGATCC---------------AAACTAATTACATATCA------------GTCATGAGT----------------------------------------------------------------------GAATATTAAGCAA--CTCTGAACTGCCAATG-TAAGTCA---CCAGAAAAATAA------------------------------------AATATATTTCT-ACCCAGGATTGGTGCCCCTGCAAAGGTAT-GCTTGTGTATACAAGCATCCATGTTATCATTAATGC--TTCT-TCCTCATTT---GACTTCTCATCAACTTCTTCTTGTCTCCATGGTAACAGCCCTTCT-ACTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57929467 656 -  94987271 CCTGGACCTCT-AAATCAAGACAGTGACAGTGTGCCT------TCAAAGTGCCTATCAAT-AGAAAACAAGCCGGGGCTAAAGGATTTCTGAAGTTTGTG-TACATCCAAAGTTCa-agaagaagaagaagaaaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaTTACTAAAA-ATTAATTTCACATGGATACAAACTGAATATTAagccagcatgctagcacatgcctttagtgccagcactagggaggtagaggcaggaggatttctgtcagtttgacgaaagcctagtgtacatgaccagttctaggcatccagagctacatagactctgtctccaaaaaaaaaaaAAaaagaaagaaagaaagaaaagaaaagaaaacaagaaagGGAATATTAAGCAACCCTCTGAGGTACTAATG-TAAGTCAGACACacaaaaataacaacaacaacaataataaataatagcaataaATAAGAACACATCAGT-GCTCAAGGGAAGCTCTCTGGGAAAAGTGT-GCTT-CATGTACAAGA--CTATATTACCATTAACGCCTCTCT-CCCTCACTT---GACTTCTCACCAACTGCTCCTTGTTTCCATGGTAACAGCCCTTCC-GCTC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26226364 334 +  26524999 CCCAGCCTTCTCAAATCA-------CAGGACATGTCTTCCAGCCCCAAGT--CTGTCACC-AATCAGCTATCTGGAAAGAACTGATTGCAAAAGTCCCTTTTACATCTAAAATTCT-AAAAGAGG-----------------------------------------------------------------------------------------ATCATTAAAG-A------------------------------------------------------------------------------AA-TATCAGGGGCC---------------AAGCTAATTCAGTATCA------------ATCAGGAGT----------------------------------------------------------------------GAATATTAAGCAA--CTCCAAAGGGCT--CT-GAAGTCA---CC---AAAATAA------------------------------------ATCATATTTCT-GTC----------ACTTCTGTCAAGGTGT-GCTTGTGAATAC-GGCATCTATATTATCATTAACTC--CTAT-CCCTCATTT---GACTTCTTGCCAACCACTCCTCATTGCCATGGTAACAGCCCTTCC-ACTC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            35036 345 +    102524 CCCAGCCCTCCCAAGTCA-------G---GTGTGTCTTCCAGCACCAGCT--CTGGCACTAAACCGGCTATCAGGGGCTAAATGATTTC-AAAGTCCCTTTCATGTTTAAAATTCT-AAAAAAAAAAAAAAGCAGCAGC---------------------------------------------------------------------------AGCATCAAAC--------------------------------------------------------------------------------AAGCAACAGGCTGC---------------ACTCTGATTGGGTATCG--------------------C----------------------------------------------------------------------G--TACAAAGCAA--CTCTGAAATCCCGACG-CCCGTCA---GGGAGAAAACGA------------------------------------AATGCACTTAG-GCCTGGA-ACGGCGCGCC-ATAAAGGTGC-GCTGGCGGAGGCAAGCACCTATGTTATCCCCAACGC--CTCTCTCCTC-------GACTCCTCGCCAA-GGCTCCCCGTTTCCATGGCAACAGCCCTTCC-GCTC
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1726472.000000
s hg38.chr6_GL000254v2_alt   886251 161 +   4827813 ATCAGGAACCTACTGAACAT-ACAACTC-CATCGTTTTTT--------------TTTTTTTCTCTC----T---CTACCCAAGGA-AGTCAGAGCAAAGGTAGGATCCACAGGAAACATAATGCAGACAAGTTCAGGGT-GGGCACAGCCCCCT-----CTTCTCCTTTATATCCAAATTCCGCACCCTCT
s panTro5.chr6             29849023 157 + 175400573 ATCAGGAACCTACTGAACAT-ACAACTC-TATCG----TT--------------TTTTTTTCTCTC----T---CTACCCAAGGA-AGTCAGAGCAAAGGTAGGATCCACAGGAAACATAATGCAGACAAGTTCAGGGT-GGGCACAGCCCCCT-----CTTCTCCTTTATATCCAAATTCCGCACCCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30083387 156 + 173848474 ATCAGGAACCTACTGAACAT-ACAACTC-TATCG-----T--------------TTTTTTTCTCTC----T---CTACCCAAGGA-AGTCAGAGCAAAGGTAGGATCCACAGGAAACATAATGCAGACAAGTTCAGGGT-GGGCACAGCCCCCT-----CTTCTCCTTTATATCCAAATTCCGCACCCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5890007 162 +   6154872 ATCAGGAACCTACTGAACAT-ACAACTCTTATCGTTTTTT--------------TTTTTTTCTCTC----T---CTACCCAAGGA-AGTCAGAGCAAAGGTAGGATCCACAGGAAACATAATGCAGACAAGTTCAGGGT-GGGCACAGCCCCCT-----CTTCTCCTTTATATCCAAATTCTGCACCCTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30079587 168 + 172585720 ATTCGGAACCTACTGAACAT-ACAACTC-TATCGtttttt--------------tttttttttttttctttCTCCTACCCAAGGA-AGTCAGAGCAAAGGTAGGATCCACAGGAAACATAATGCAGACAAGTCCAGGGT-GGGCACAGTGCCCT-----CTTCTCCTTTATATCCAAATTCCACACCCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29742133 164 - 170955103 ATTAGGAACCTACTGAACAT-ACAACTC-TATCGtttttt--------------tttttttttctt----tCTCCTACCCAAGGA-AGTCAGAGCAAAGGTAGGATCCACAGGAAACATAATGCAGACAAGTCCAGGGT-GGGCACAGTGCCCT-----CTTCTCCTTTATATCCAAATTCCACACCCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2790835 160 -   2996164 ATTAGGAACCTACTGAACATAACAACTC-TATCATTTTTT--------------TTTTTTTCTTCT--------CTACCCAAGGACAGTCAGAGCAAAGGTAGAATCCACCAGAAACACAA-GCA-ACAAGTCCAGGGT-GGGCACAGTGCCCT-----CTTCTCCTTTATATCCAAATTCCACACCCTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     541890 164 +    766320 ATTAGGAACCTACTGAACAT-ACAACTC-TATCAtttttt--------------tttttttttctt----tCTCCTACCCAAGGA-AGTCAGAGCAAAGGTAGGAGCCACAGGAAACATAATGCAGACAAGTCCAGGGT-GGGCACAGTGCCCT-----CTTCTCCTTTATATCCAAATTCCACACCCTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28997991 163 -  71996105 TTTAGGAACCTACTGAACAT-ACAACTC-TATCG-TTTTT--------------TTTTTTTTTCTT----TCTCCTACCCAAGGA-AGTCAGAGCAAAGGTAGGATCCACAGGAAACATAATGCAGACAAGTCCAGGGT-GGGCACAGTGCCCT-----CTTCTCCTTTATATCCAAATTCCACACCCTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     174197 164 +    290775 ATTAGGAACCTACTGAACAT-ACAACTC-TATCAtttttt--------------tttttttttctt----tCTCCTACCCAAGGA-AGTCAGAGCAAAGGTAGGATCCACAGGAAACATAATGCAGACAAGTCCAGGGT-GGGCACAGTGCCCT-----CTTCTCCTTTATATCCAAATTCCACACCCTCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2632920 157 -   3067355 ATTAGGAACCTACTGAACAT-ACAActc-tttc-tttttt--------------tttctctctctc----tctcCTACCCAAGGA-AGTCAGAGCAAAGGTAGGATCCACAGGAAACATAATGCAGACAAGTCCAGGGT-GGGCACAGCGCCCT-----CTTCTCCCTTATATCCAAATTCCACA------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30074858 157 + 171630274 ATCAGGAACCTACTGAATAT-ACAACTC-TATCTTTTTTT--------------------TCTCTC----TCTCCTGCCCAAGGA-AGTCAGAGCAAAGGTAGGATCCATAGGAAACATAATGCAGACAAGTTCAGGGT-GGGCACAGCCCCCG-----CTTCCCCTTTATATCCAAATTCCACA-TCTCT
i calJac3.chr4             I 974 C 0
s saiBol1.JH378357           221469 182 -    242197 ATCAGGAACCTACTGAATAT-ACAACTC-TATCGTTTTTTGTTTTTTTtctctctctctctctctc----tctcCTGTCCAGGGA-AGTCAGAGCAAAGGTAGGATGCATAGGAAACATAATGCACACAAGTTCAGGGT-GGGCACAGCCCCCTCCCCCCTTCCCCTTTACATACAAATTCCACA-TCTCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     215214 158 -   1771730 ATCAGGAACCTACTGAATAT-ACAACTC-TATCGTTTTTT-------------------TTCTTTC----TCTCCTGCCCAAGGA-AGTCAGAGCAAAGGTAGGATCCACAGGAAACATCATGCGGACAAGTTCAGGGT-GGGCACAGCACCCC-----CTTCCCCTTTATATCCAAATTCCACA-TCTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     297184 161 -    457564 ATCAGGAACCTACTGAATAT-ACAACTC-TATCGTTTTTT----------------CTTCTCTCTC----TCTCCTGCCCAAGGA-AGTCAGAGCAAAGGTAGGATCCATAGGAAACAAAATGCAGACAAGTTCAGGGT-GGGCACAACCCCCA-----CTTCCCCTTTATGTCCAAATTCCACA-TCTCT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               100742 151 + 123392446 ATCAGGAACCCACTGAACAC-ACCACTC-TATCGTTTTTC--------------------CCTCTC----TCTCCCGACCAAGGG-AGTCACAACAGAG--------CACGGGAAACATGACACGTGTAAGTTCAGAGTGGGGCACAGCCCCTT-----CCCCTCCTGTATGTCCAGACTCCACACCCTCT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     594719 151 +    730504 ATCAGGAACCCACTGAACAT-ACCACTC-TATCGTCTTTC--------------------TCTCTC----TCTCCTGCCCAAGGA-AGTCACAGCAGAG--------CACAGGAAACATAATGCACATAAGTTCAGAGTGGGGCACAGCCCCTT-----CCCCTCCTCTATGTCCAAACTCCACACCCTCT
i proCoq1.NW_012152574v1   C 0 I 35
s otoGar3.GL873550           108710 149 +  18854210 ATCAGGAACCTACTGAACAT-ATCACTC-TATTATTTCGC--------------------TCTCTC----CC---------AAGA-AGTCACAGCAGAGGTAAAATTCACCGGAAACATGATGCAAACAAGTTCAGGGT-GAGCACAGCCCCTT-----CCCCTCCTGTATATCCAAACTCTATACCTTCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57930123 119 -  94987271 ATCAGAAGCCTACTGTATGC------TC-CACAATTTTTC--------------------TCTCTC----------GCCCAAGGA-AATCA-AGCACAGGTAG-----------AACATGACGCAAACAAGCTCAAGAT-GGGTACAGGCCCCT-----TCCCATC-------CCCAACTCC---------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26226698 145 +  26524999 -ATAGGGGCCTCGTGATCAT---AACTC-TCCCATTTCTC----------------------TCTC----GCTTCTGCTCAAGAA-AGTCACAGCAGAGGTGAAAGCCACAGGAAACACGGTGCAAACAAGCTCTGCGT-G--------CCCTC-----CTGGACCTGCACGTTCCACTCCTGCCCCCACT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            35381 101 +    102524 ------------ATCAACGT-ACCACGC-TCTC------C--------------------TCTCCC----CCTCCCACCCCGGGA-AACCACAGCGAGA------------------------CAAACAAGCTCAGGGC-AGGGGAGGCCCCTT-----CCCCTCC---AGGACCAGCC------------
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=338605.000000
s hg38.chr6_GL000254v2_alt   886412 40 +   4827813 CCCTGCCACCCTTT-CCCCTGCAAGGCCCCCTCAGTCCTCT
s panTro5.chr6             29849180 40 + 175400573 CCCTGCCACTCTTT-CCCCTGCAAGGCCCCCTCAGTCCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30083543 40 + 173848474 CCCTGCCACTCTTT-CCCCTGCAAGGCCCCCTCAGTCCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5890169 40 +   6154872 GCCTGCCACCCTTT-CCCCTGCAAGGCCCCCTCAGTCCTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30079755 40 + 172585720 CCCTGGCCCCCTCT-CCCCTGCAAGCCTCCCTCAGTCCCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29742297 40 - 170955103 CCCTGGCACCCTCT-CCCCTGCAAGCCTCCCTCAGTCCCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2790995 40 -   2996164 CCCTGGCCCCCTCT-CCCCTGCAAGCCTCCCTCAGTCCCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     542054 40 +    766320 CCCTGGCACCCTCT-CCCCTGCAAGCCTCCCTCAGTCCCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28998154 40 -  71996105 CCCTGGCACCCTCT-CCCCTGCAAGCCTCCCTCAGTCCCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     174361 40 +    290775 CCCTGGCACCCTCT-CCCCTGCAAGCCTCCCTCAGTCCCCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2633077 32 -   3067355 --------CCCTCT-CCCCTGCAAGCCTCCCTCAGTCCCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30075015 41 + 171630274 CCTTGGCCCCCTCTCTTCCTACAAGGCTCCCTCAGTCCCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           221651 40 -    242197 CCCTGGCCCTCTCT-GTCCTACAAGGCTCCTTCAGTCCCCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     215372 40 -   1771730 CCCTGGCCCCCTCT-CTCCTGCAAGGCTCCCTCAGTCCCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     297345 40 -    457564 CCCTGGCCCCCTCT-CTCCTGCAAGGCTCCCTCAGTCCCCT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               100893 36 + 123392446 ----GTCCTCCCCT-CCCCTGAGAAGTTCCTTGGGTCCGCC
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           108859 36 +  18854210 ----CCCCTCCCCC-CTCCTAAGAGGTTCTTTGGGACCCCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57930242 28 -  94987271 -CCTGCTATTCTCAACCCCTGC----CTCTTCC--------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26226843 30 +  26524999 ----------CCCA-CCCCTGTAAGGCACCCTCAGTTCTGT
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            35482 22 +    102524 -----------CCC-TCCCCGGGGGGCCGCCACA-------
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     594870 35 +    730504 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=4455334.000000
s hg38.chr6_GL000254v2_alt   886452 267 +   4827813 CCACCCTCCCAGGTGCCAGACTGCAAGTCCCCACACTCTCACCATGTTGGAAATGCTGCGGGTATTGGCAGGATTCAGCATGACAATCTCAGTTGTGATGTGGCCCTCCACCGCCTCAGTCATCTCATCCACTGTGCAGTTGATAGAAGGGTCGTAGATCTTGAACCAATTGTCAGCATACCACCCAATGAGGAACCAGACGTACTTCTTCCCAAAGAGACGCTCCTTGTACACCTGAATACAGAGG---AGAA---------TGGCTGAGTTTTTGTT
s panTro5.chr6             29849220 267 + 175400573 CCACCCTCCCAGGTGCCAGCCTGCAAGTCCCCACACTCTCACCATGTTGGAAATGCTGCGGGTATTGGCAGGATTCAGCATGACAATCTCAGTTGTGATGTGGCCCTCCACCGCCTCAGTCATCTCATCCACTGTGCAGTTGATAGAAGGGTCGTAGATCTTGAACCAATTGTCAGCATACCACCCAATGAGGAACCAGACGTACTTCTTCCCAAAGAGACGCTCCTTGTACACCTGAATACAGAGG---AGAA---------TGGCTGAGTTTTTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30083583 267 + 173848474 CCACCCTCCCAGGTGCCAGCCTGCAAGTCCCCACACTCTCACCATGTTGGAAATGCTGCGGGTATTGGCAGGATTCAGCATGACAATCTCAGTTGTGATGTGGCCCTCCACCGCCTCAGTCATCTCATCCACTGTGCAGTTGATAGAAGGGTCGTAGATCTTGAACCAATTGTCAGCATACCACCCAATGAGGAACCAGACGTACTTCTTCCCAAAGAGACGCTCCTTGTACACCTGAATACAGAGG---AGAA---------TGGCTGAGTTTTTGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5890209 267 +   6154872 CCACCCTCCCAGGTGCCAGCCTGCAAGTCCCCACACTCTCACCATGTTGGAAATGCTGCGGGTATTGGCAGGATTCAGCATGACAATCTCAGTTGTGATGTGGCCCTCCACCGCCTCAGTCATCTCATCCACTGTGCAGTTGATAGAAGGGTCGTAGATCTTGAACCAATTGTCAGCATACCACCCAATGAGGAACCAGACGTACTTCTTCCCAAAGAGACGCTCCTTGTACACCTGAATACAGAGG---AGAA---------TGGCTGAGTTTTTGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30079795 267 + 172585720 CCACCCTCCCAGATGCCAGCCTGCAAGTCCCCACACTCTCACCATGTTGGAAATGCTGCGGGTGTTGGCAGGATTCAGCATGACAATCTCAGTGGTGATGTGGCCCTCCACGGCCTCAGTCATCTCATCTACTGTGCAGTTGATAGAAGGGTCGTAGATCTTGAACCAATTGTCAGCATACCACCCAATGAGGAACCAGACGTACTTCTTCCCAAAGAGACGCTCCTTGTACACCTGAATACAGAGG---AGGA---------TGGCTGGGTTTTTGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29742337 267 - 170955103 CCACCCTCCCAGATGCCAGCCTGCAAGTCCCCACACTCTCACCATGTTGGAAATGCTGCGGGTGTTGGCAGGATTCAGCATGACAATCTCAGTGGTGATGTGGCCCTCCACGGCCTCAGTCATCTCATCTACTGTGCAGTTGATAGAAGGGTCGTAGATCTTGAACCAATTGTCAGCATACCACCCAATGAGGAACCAGACGTACTTCTTCCCAAAGAGACGCTCCTTGTACACCTGAATACAGAGG---AGGA---------TGGCTGGGTTtttgtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2791035 267 -   2996164 CCACCCTCCCAGATGCCAGCCTGCAAGTCCCCACACTCTCACCATGTTGGAAATGCTGCGGGTGTTGGCAGGATTCAGCATGACAATCTCAGTGGTGATGTGGCCCTCCACGGCCTCAGTCATCTCATCTACTGTGCAGTTGATAGAAGGGTCGTAGATCTTGAACCAATTGTCAGCATACCACCCAATGAGGAACCAGACGTACTTCTTCCCAAAGAGACGCTCCTTGTACACCTGAATACAGAGG---AGGA---------TGGCTGGGTTtttgtt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     542094 267 +    766320 CCACCCTCCCAGATGCCAGCCTGCAAGTCCCCACATTCTCACCATGTTGGAAATGCTGCGGGTGTTGGCAGGATTCAGCATGACAATCTCAGTGGTGATGTGGCCCTCCACGGCCTCAGTCATCTCATCTACTGTGCAGTTGATAGAAGGGTCGTAGATCTTGAACCAATTGTCAGCATACCACCCAATGAGGAACCAGACATACTTCTTCCCAAAGAGACGCTCCTTGTACACCTGAATACAGAGG---AGGA---------TGGCTGGGTTTTTGTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28998194 267 -  71996105 CCACCCTCCCAGATGCCAGTCTGCAAGTCCCCACACCCTCACCATGTTGGAAATGCTGCGGGTGTTGGCAGGATTCAGCATGACAATCTCAGTGGTGATGTGGCCCTCCACGGCCTCAGTCATCTCATCTACTGTGCAGTTGATAGAAGGGTCGTAGATCTTGAACCAATTGTCAGCATACCACCCAATGAGGAACCAGACATACTTCTTCCCAAAGAGACGCTCCTTGTACACCTGAATACAGAGG---AGGA---------TGGCTGGGTTtttgtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     174401 267 +    290775 CCACCCTCCCAGATGCCAGCCTGCAAGTCCCCACATTCTCACCATGTTGGAAATGCTGCGGGTGTTGGCAGGATTCAGCATGACAATCTCAGTGGTGATGTGGCCCTCCACGGCCTCAGTCATCTCATCTACTGTGCAGTTGATAGAAGGGTCGTAGATCTTGAACCAATTGTCAGCATACCACCCAATGAGGAACCAGACATACTTCTTCCCAAAGAGACGCTCCTTGTACACCTGAATACAGAGG---AGGA---------TGGCTGGGTTTTTGTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2633109 267 -   3067355 CCACCCTCCCAGGTGCCAGCCTGCAAGTGCCCACACTCTCACCATGTTGGAAATGCTACGGGTGTTGGCAGGATTCAGCATGACAATCTCAGTGGTGATGTGGCCCTCCACGGCCTCAGTCATCTCATCCACTGTGCAGTTGATAGAAGGGTCGTAGATTTTGAACCAATTGTCAGCATACCACCCAATGAGGAACCAGACATACTTCTTCCCAAAGAGACGCTCCTTGTACACCTGAATACAGAGG---AGGA---------TGGCTGGGTTtttgtt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30075056 267 + 171630274 CCACCCTCCCAGGTGCCAGCCTGCAAGCCCCCACACTCTCACCATGTTAGAAATGCTGCGAGTGTTGGCAGGATTCAGCATAACAATCTCAGTGGTGATATGGCCTTCCACCGCCTCAGTCATCTCATCCACTGTGCAGTTGATAGAAGGGTCATAGATCTTGAACCAATTGTCAGCATACCACCCAATGAGGAACCAGACATACTTCTTCCCAAAGAGACGCTCCTTGTACACCTGAATACAGAGG---AGGA---------TGGCTGAGCTTTTGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           221691 259 -    242197 CCACCCTCCCAGGTGCCAGCCTGCAAGTCCCCACACTCTCACCATGTTAGAAATGCTGCGAGTGTTGGCAGGATTCAGCATAACAATCTCAGTGGTGATGTGGCCTTCCACTGCCTCAGTCATCTCATCCACCGTGCAGTTGATAGAAGGGTCGTAGATCTTGAACCAATTGTCAGCATACCACCCAATGAGGAACCAGACATACTTCTTCCCAAAGAGACGCTCCTTGTATACCTGAATACAGAGG---AGGA---------TGGCTGGA--------
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     215412 267 -   1771730 CCACCCTCCCAGGTGCCAGCCTGCAAGTCCCCACACTCTCACCATGTTAGAAATGCTGCGAGTGTTGGCAGGATTCAGCATAACAATCTCAGTGGTGATGTGGCCTTCCACCGCCTCAGTCATCTCATCCACTGTGCAGTTGATAGAAGGGTCGTAGATCTTGAACCAATTGTCAGCATACCACCCAATGAGGAACCAGACATACTTCTTCCCAAAGAGACGCTCCTTGTATACCTGAATACAGAGG---AGGA---------TGGCTGGGCAtttgtt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     297385 267 -    457564 CCACCCTCCCAGGTGCCAGCCTGCAAGTCCCCACACTCTCACCATGTTAGAAATGCTGCGAGTGTTGGCAGGATTCAGCATAACAATCTCAGTGGTGATGTGGCCTTCCACCGCCTCAGTCATCTCATCCACTGTGCAGTTGATAGAAGGGTCGTAGATCTTGAACCAATTGTCAGCATACCACCCAATGAGGAACCAGACATACTTCTTCCCAAAGAGACGCTCCTTGTACACCTGAACACAGAGG---AGGG---------TGGCTGGGCTtttgtt
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               100929 269 + 123392446 CCACTGCCCTGGGGTACAGCCTCTAAACCCCCACGCCCTCACCATGTTGGAAATGCTGCGGGTATTGGCAGGGTTCAGCATGACAATCTCGGTGGTGATGTGCCCCTCCACCGCCTGGGTCATCTCGTCCACCGTGCAGTTGATAGACGGGTCATAGGTCTTGAACCAATTGTCAGCATACCACCCGATGAGGAACCAGACATACTTCTTCCCGAAGAGACGCTCCTTGTACACCTAAATACAGAGACG-AGGA---------GGGCCGAGTTTTTGTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     594905 278 +    730504 CCACTCTCCCAGGTGCCAGCCTCTAAGCCCCCACGCCCTCACCATGTTGGAAATGCTGCGGGTATTGGCAGGGTTCAGCATGACAATCTCAGTGGTGATGTGCCCCTCCACTGCCTGGGTCATCTCGTCCACTGTGCAGTTGATAGACGGGTCATAGATCTTGAACCAATTGTCAGCATACCACCCGATGAGGAACCAGACATACTTCTTCCCAAAGAGACGCTCCTTGTACACCTAAATACAGAGACA-AGGATTTTTGTTCTGGCCGAGTTTTTGTT
i proCoq1.NW_012152574v1   I 35 I 11
s otoGar3.GL873550           108895 270 +  18854210 CCACTCTCCCAAATGCCAGCCTCTAAGCCTCCATACTCTCACCATGTTGGAAATGCTGCGGGTGTTGGCAGGGTTCAGCATGACAATCTCAGTGGTAATGTGTCCCTCCACTGCCTGGGTCATCTCATCTACCGTGCAGTTGATAGATGGGTCATAGATCTTGAACCAATTGTCAGCATACCACCCAATGAGGAACCAGACATACTTCTTCCCAAAAAGACGCTCCTTATACACCTAAATACAGAGAAGAAGGA---------AGGCTGAGTTTTTGTT
i otoGar3.GL873550         C 0 I 3
s mm10.chr17               57930270 245 -  94987271 CTCTCCTTCGATGTTCC--------------------CTCACCATGTTGGAAATGCTTCGGGTGTTGGCAGGGTTCAGCATGACAATCTCCGTGGTGATATGGCCCTCCACCGCCTCAGTCATCTCTTCTACTGTACAATTGATTGACGGGTCATAGGTTTTGAACCAGTTGTCAGCATACCACCCGATGAGAAACCAGACATACTTCTTCCCAAAGAGCCGTTCCTTATAGACCTGCATTCAAAGT---AGGG---------AGG-GAAGCATTGGA-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26226874 265 +  26524999 CCCCAGCCCAGGGGGCCAGCTTCCAGGTCCCCAC--CCTCACCATGTTGGAGATGCTGCGGGTGTTGGCTGGGTTCAGCATGACAATCTCAGTGGTGATGTGGCCTTCCACAGCCTCGGTCATCTCATCCACTGTGCAGTTGATGGAGGGGTCGTAGGTCTTGAACCAATTGTCAGCATACCACCCAATGAGGAACCACACATACTTCTTCCCAAAGAGCCGCTCCTTGTATACCTGAATGCAGAGG---AGGA---------GGGCTGGGGCTTTATT
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            35504 244 +    102524 -------CCCAGG-GCCAGCGCGAGGACCCCCG----CTCACCATGTTGGAGATGCTGCGGGTGTCAGCAGGGTTCAGCATGACGATCTCGGTGGTGATGTGGCCCTCGACCGCCTCGGTCATCTCGTCCACCGTGCAGTTGATGGACGGGTCATGGGTCTTGAACCAGTTGTCGGCGTACCACCCGATGAGGAACCAGACGTACTTCTTCCCGAAGAGCCGCTCCTTGTACACCTGGACA-ACGGA---AGGG---------GGGCTG----------
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=72192.000000
s hg38.chr6_GL000254v2_alt   886719 15 +   4827813 TGCTCATTTGTTTGT
s panTro5.chr6             29849487 15 + 175400573 TGCTCATTTGTTTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30083850 15 + 173848474 TGCTCATTTGTTTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5890476 15 +   6154872 TGCTCATTTGTTTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30080062 15 + 172585720 TGCTCATTTGTTTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29742604 15 - 170955103 tgctcgtttgtttgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2791302 15 -   2996164 tgctcgtttgtttgt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     542361 15 +    766320 TGCCCGTTTGTTTGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28998461 15 -  71996105 tgctcgtttgtttgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     174668 15 +    290775 TGCCCGTTTGTTTGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2633376 15 -   3067355 tgctcgtttgtttgt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30075323 14 + 171630274 TTTTCATTTGTTTG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           221950 10 -    242197 ----CATTTGTTTG-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     215679 14 -   1771730 tgttcatttgtttg-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     297652 14 -    457564 tgttcatttgtttg-
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               101198 12 + 123392446 --CTGCTTTGTTTT-
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           109168  9 +  18854210 -----TTCTAATTT-
i otoGar3.GL873550         I 3 C 0
s mm10.chr17               57930515 11 -  94987271 ----GGTTTGTTTTT
i mm10.chr17               C 0 I 11
s canFam3.chr35            26227139  5 +  26524999 --------TCTTT--
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            35748  7 +    102524 ----CGGTGGG----
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     595183 11 +    730504 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=2972572.000000
s hg38.chr6_GL000254v2_alt   886734 230 +   4827813 TTTTGTCTTATCTCACTTGATACTATTTAGCCTCTTGGGAATCAGGGAAGAGCAGTAGA------ACTAAAAAGA----------GAAATCTAC----AAGTCTTGGGGATAGTAGGAAAGGCT-GACAATTCTTCC---TTCTAAGTTTCT-CCCCAGCCCCTGTATTTCTGAGTGGCCTTTTCCAGCCAGTCAGGACAGATGGAATTCATGGGCTTCTCAGGAAACACAAAGCAGTAGAAAAATGAG-ATCTGA
s panTro5.chr6             29849502 230 + 175400573 TTTTGTCTTATCTCACTTGATACTATTTAGCCTCTTGGGAATCAGGGAAGAGCAGTAGA------ACTAAAAAGA----------GAATTCTAC----AAGTCTTGGGGATAGTAGGAAAGGCT-GACAATTCTTCC---TTCTAAGTTTCT-CCCCAGCCCCTATATTTCTGAGTGGCCTTTTCCAGCCAGTCAGGACAGATGGAATTCATGGGCTTCTCAGGAAACACAAAGCAGTAGAAAAATGAG-ATCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30083865 230 + 173848474 TTTTGTCTTATCTCACTTGATACTATTTAGCCTCTTGGGAATCAGGGAAGAGCAGTAGA------ACTAAAAAGA----------GAATTCTAC----AAGTCTTGGGGATAGTAGGAAAGGCT-GACAATTCTTCC---TTCTAAGTTTCT-CCCCAGCCCCTGTATTTCTGAGTGGCCTTTTCCAGCCAGTCAGGACAGATGGAATTCATGGGCTTCTCAGGAAACACAAAGCAGTAGAAAAATGAG-ATCTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5890491 230 +   6154872 TTTTGTCTTATCTCACTTGATACTATTTAGCCTCTTGGGAATCAGGGAAGAGCAGTAGA------ACTAAAAAGG----------GAAATCTAC----CAGTCTTGGGGATAGTAGGAAAGGCT-GACAATTCTTCC---TTCTAAGTTTCT-CCCCAGCCCCTGTATTTCTGAGTGGCCTTTTCCAGCCAGTCAGGACAGATGGAATTCATGGGCTTCTCAGGAAACACAAAGCGGTAGAAAAATGAG-ATCTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30080077 230 + 172585720 TTTTGTCTTATCTCACTTGACACTATTTAGCCTCTTGGGAATCAGGGAAGAGCAGCAGA------ACTACAAAGA----------GAAATCTGC----AAGTATTGGGGATGGTAGGAAAGGCT-GACAATTCCTCC---TTCTAAGTTACT-CCCCAGTCCCTGTAGTTCTGAGTGGCCTTTTCCAGTCAGTCAGGACAGATGGAATTCATAGGCTTCTCGGGAAACACAAAGCAGTAGAAAAACGAG-ATCTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29742619 230 - 170955103 ttTTGTCTTATCTCACTTGACACTATTTAGCCTCTTGGGAATCAGGGAAGAGCAGCAGA------ACTACAAAGA----------GAAATCTGC----AAGTATTGGGGATGGTAGGAAAGGCT-GACAATTCCTCC---TTCTAAGTTACT-CCCCAGTCCCTGTAGTTCTGAGTGGCCTTTTCCAGTCAGTCAGGACAGATGGAATTCATAGGCTTCTCGGGAAACACAAAGCAGTAGAAAAACGAG-ATCTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2791317 230 -   2996164 ttTTGTCTTATCTCACTTGACACTATTTAGCCTCTTGGGAATCAGGGAAGAGCAGCAGA------ACTACAAAGA----------GAAATCTGC----AAGTATTGGGGATGGTAGGAAAGGCT-GACAATTCCTCC---TTCTAAGTTACT-CCCCAGTCCCTGTATTTCTGAGTGGCCTTTTCCAGTCAGTCAGGACAGATGGAATTCATAGGCTTCTCGGGAAACACAAAGCAGTAGAAAAACGAG-ATCTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     542376 230 +    766320 TTTTGTCTTATCTCACTTGACACTATTTAGCCTCTTGGGAATCAGGGAAGAACAGTAGA------ACTAAAAAGA----------GAAATCTGC----AAGTATTGGGGATGGTAGGAAAGGCT-GACAATTCCTCC---TTCTAAGTTACT-CCCCAGCCCCTGTATTTCTGAGTGGCCTTTTCCAGTCAGTCAGGACAGATGGAATTCATAGGCTTCTCGGGAAACACAAAGCAGTAGAAAAACGAG-ATCTGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28998476 230 -  71996105 ttTTGTCTTATCTCACTTGACACTATTTAGCCTCTTGGGAATCAGGGAAGAGCAGTAGA------ACTACAAAGA----------GAAATCTGC----AAGTATTGGGGATGGTAGGAAAGGCT-GACAATTCCTCC---TTCTAAGTTACT-CCCCAGTCCCTGTATTTCTGAGTGGCCTTTTCCAGTCAGTCAGGACAGATGGAATTTATAGGCTTCTCAGGAAACACAAAGCAGTAGAAAAATGAG-ATCTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     174683 230 +    290775 TTTTGTCTTATCTCACTTGACACTATTTAGCCTCTTGGGAATCAGGGAAGAACGGTAGA------ACTAAAAAGA----------GAAATCTGC----AAGTATTGGGGATGGTAGGAAAGGCT-GACAATTCCTCC---TTCTAAGTTACT-CCCCAGCCCCTGTATTTCTGAGTGGCCTTTTCCAGTCAGTCAGGACAGATGGAATTCATAGGCTTCTCGGGAAACACAAAGCAGTAGAAAAACGAG-ATCTGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2633391 230 -   3067355 ttTTGTCTTATCTCACTTGACACTATTTAGCCTCTTGGGAATCAGGGAAGAGCAGCAGA------ACTACAAAGA----------GAAATCTGC----AAGTCTTGGGGATGGTAGGAAAGGCT-GACAATTCCTCC---TTCTAAGTTACT-CCCCAGCCCCTGTATTTCTGAGTGGCCTTTTCCAGTCAGTCAGGACAGATGGAATTCATAGGCTTCTCGGGAAACACAAAGCAGTAGAAAAATGAG-ATCTGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30075337 230 + 171630274 TTTTGTCTTTTCTCACTTGAAACTATTTAGACTCTTCGGAATCAGGAAAGAGCAGTACA------ACTAAAAAGA----------GAAATCTGT----AATTCTGGGGGATGGTAGGAAAGGCT-GACAATTCTTCC---TTCTAAGTTTCT-CCCCAGACCCTGTATATTTGAGTGGCCTTTTCCAGCCAGTCAGGACAGATGGAATTCATGGGCTTCTCAGGAAACACAAAGCAGCAGAAAAATGAG-ATCTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           221960 226 -    242197 TTTTGTCTTTTCTCACTTGACACTATTTAGCCTCTTGGGAATCAGGAAAGAGCAGCAGA------ACTAAAAAGA----------GAAATCCGT----AATTCTGGGGGATGGTAAGAAAGGCT-GACAATTCTTCC-------AAGTTTCT-CCCCAGACCCTGTATATCTGAGTGGCCTTTTCCAGCCAGTCAGGACAGATGGAATTCACGGGCTTCTCAGGAAACACAAAGCAGTAGAAAAAGGAG-ATCTGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     215693 227 -   1771730 tttTGTCTTTTCTCACTTGACACTATTTAGCCTCTTGGGAATCAGGAAAGAGCAGTAGA------ACTAAAAAGA----------GAAATCCAT----AATTCTGGGGGATGGTAGGAAAGGCT-GACAATTCTTCC-------AAGTTTCTCCCCCAGACCCTGTATATCTGAGTGGCCTTTTCCAGCCAGTCAGGACAGATGGAATTCACAGGCTTCTCAGGAAACACAAAGCAGTAGAAAAAGGAG-ATCTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     297666 230 -    457564 tttTGTCTTTTCTCATTTGACACTATTTAACCTCCTGGGAATCAGGAAAGAGCAGTAGA------ACCAAAAAGA----------GAAATCCAT----AATTCTGGGGGATGGTAAGAAAGGCT-GACAATTCTTCC---TTCTAAGTTTCT-CCCCAGACCCTGTATATCTGAGTGGCCTTTTCCAGCCAGTCAGGACAGATGGAATTCACGGGCTTCTCAGGAAACACAAAGCAGTAGAAAAAGGAG-ATCTGA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               101210 236 + 123392446 TTTTGTCTTATCTCACTTGACACTATTCAGCCTCCTGGGAATCGGGGAAGAACAGCAGAGCTATTAATAAAAAGT----------GGAATCTAC----AAGTCTTGGGAGTGGTAGGGAAAGCTCAACAATTCCTCC---TTCTCAGTGCCT--CCCAGCCCCACTATTTCTGAGTGGCCTTTTCCAGCCAGCCAGGAAAGACAGAATTCACAGGCTGCTCAGGAAACACAAAGCAGTAGGAAAATGAG-ATCCGA
i micMur3.chr6             C 0 I 135
s proCoq1.NW_012152574v1     595194 236 +    730504 TTTCATCTTATCTCACTTGACACTATTCAGCCTCTTGGGAATCAGGGAAGAACAGC-GAGCTATTAATAAAAAGT----------GGAATCTAC----AAGTCTTGGGAGTGGTAGGAGAAGCTCAATGATTCCTCC---TTCTCAGGGCCT-CCCCAGCCCCACTATTTTTGAGTGGCCTTTTCCAGCCAGTCGGGAAAGATGGAATTCACAGGCTCCTCAGGAAAAACAAAGCAGTAGGAAAACGAG-ATCCGA
i proCoq1.NW_012152574v1   I 11 C 0
s otoGar3.GL873550           109177 226 +  18854210 -TTTGTCTTATCTCACTTGACACTATTCAGACTCTTGGGAATCAGGAAAGAGCAGA---------ACTAAAAAGA----------AAAATCTAC----AAGTC-TAGGAGAGGTAGGAAAAGCTCAACAATTCCTCT---TTCTATGCTCCT-CCCTAGCCCCTCTATTTCTGAGTAGGCTTTTCCAGCCAGTCAGGAAAAATAGAATTCACAGGCTCTTTAGGAAACATCAAGCAGTAGGAAAATGAA-ATCTGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57930537 182 -  94987271 AGTAGTGTTAGCTCATTACATACTGTTTAGTCCCTTAAGAATCA---AAGATCAG--GA------TTTAAAAAAAAATCTTCACTGAAATCCACTATATAATCTTC-AAATCATAGGAGAGTCTCAACA---------------AAATGCCT-CC----------------------------TTTGGCCACTCAGAAAAGACAGAGTT--------------AAAACACAAAGCAAT---AAAATGAGAATGTG-
i mm10.chr17               I 11 C 0
s canFam3.chr35            26227144 204 +  26524999 TTTTATCTTATTTCCCTTGACACTATGCAGCCTCTGGGGAATCAGAGAAGAGCAG-AGA------ATTGGAAAGA----------GTAATCTAC----AGGTCTTGGATGGAGTTGGAGACACTCAACTACTCCTCCTACTACTAAGTTTCT-AC-----------------------------TGAGCTAGTCAGGAAATATGGGATTCAAGGGTTCCTGTAGAAACCCAAAGGGGTAGGAAGGTAAA-ATCTGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            35755 204 +    102524 CTCTGTCTCGTTTC--TTGGTTCTATCACACCTC--------------------GCAGG------CTTAAAAGGA----------GAACCCGGC----AAGTGCTGGGGTGCTGGGGAAGGGCT-GGCCACGGCGCC---CGC-AAGTCCCT-CCCCAGCCCCTCTACTTCTGGGGGGTCTTTTCCA--CGGGCAGTAAAGGGTGGATCCACAGGCTTCTCGGGGAACAC-AAGTGGTAGGAAAATGAG-CTCCCT
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1147963.000000
s hg38.chr6_GL000254v2_alt   886964  97 +   4827813 AGAAAGTATCAT----------------------------------------------GTGTGTGC----------------AGACAAGGGATGCAGTCAGAGCCAACAGACAGAGACATCCTATGAATCGTCACCTCAG----ATCATATGCTATCAACTCA
s panTro5.chr6             29849732  97 + 175400573 AGAAAGTATCAT----------------------------------------------GTGTGTGC----------------AGACAAGGGATGCAGTCAGAGCCAACAGACAGAGACATCCTATGAATCGTCACCTCAG----ATCATATGCTATCAACTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30084095  97 + 173848474 AGAAAGTATCAT----------------------------------------------GTGTGTGC----------------AGACAAGGGATGCAGTCAGAGCCAACAGACAGAGACATCCTATGAATCGTCACCTCAG----ATCATATGCTATCAACTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5890721  97 +   6154872 AGAAAGTATCAT----------------------------------------------GTGTGTGC----------------AGACAAGGGATGCAGTCAGAGCCAACAGACAAAGACATCCTATGAATCGTCACCTCAG----ATCATATGCTATCAACTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30080307  97 + 172585720 AGAAAGTATCAT----------------------------------------------GTGTGTGC----------------AGACAAGGGATGCAGTCAGAGCCAACAGACAGAGACATCCTATGAATCGTCACCTCAG----ATCATATGCTATCAACTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29742849  97 - 170955103 AGAAAGTATCAT----------------------------------------------GTGTGTGC----------------AGACAAGGGATGCAGTCAGAGCCAATAGACAGAGACATCCTATGAATCGTCACCTCGG----ATCATATGCTATCAACTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2791547  97 -   2996164 AGAAAGTATCAT----------------------------------------------GTGTGTGC----------------AGACAAGGGATGCAGTCAGAGCCAACAGACAGAGACATCCTATGAATCGTCACCTCAG----ATCATATGCTATCAACTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     542606  97 +    766320 AGAAAGTATCAT----------------------------------------------GTGTGTGC----------------AGACAAGGGATGCAGTCAGAGCCAACAGACAGAGACATCCTATGAATCGTCACCTCAG----ATCATATGCTATCAACTCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28998706  97 -  71996105 AGAAAGTATCAT----------------------------------------------GTGTGTGC----------------AGACAAGGGATGCAGTCAGAGCCAACAGACAGAGACATCCTATGAATCGTCACCTCAG----ATCATATGCTATCAACTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     174913  97 +    290775 AGAAAGTATCAT----------------------------------------------GTGTGTGC----------------AGACAAGGGATGCAGTCAGAGCCAACAGACAGAGACATCCTATGAATCGTCACCTCAG----ATCATATGCTATCAACTCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2633621  97 -   3067355 AGAAAGTATCAT----------------------------------------------GTGTGTGC----------------AGACAAGGGATGCAGTCAGAGCCAACAGACAGAGACATCCTATGAATCGTCACCTCAG----ATCATATGCTATCAACTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30075567  95 + 171630274 AGAAACTATC------------------------------------------------GTGTGTGC----------------AGACAACGAATGCAGTCAGAGCCAACAGACAGAGACATCCTATGAATCGTCACCTCAG----ACCACATGCTATCAACTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           222186  97 -    242197 AGAAACTATCAT----------------------------------------------GTGTGTGC----------------AGACAACGAACGCAGTCAGAGCCAACAGACAGAGACATCCTATGAATCGTCACCTCAG----ATCATATGCTATCAACTCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     215920  97 -   1771730 AGAAGTTACCAT----------------------------------------------GTGTGTGC----------------AGACAACGAATGCAGTCAGAGCCAACAGACAGAGACATCCTATGAATCGTCACCTCAG----ATCATATGCCATCAACTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     297896  97 -    457564 AGAAACTATCAT----------------------------------------------GTGTGTGC----------------AGACAACGAATGCAGTCAGAGCCAACAGACAGAGACATCCTATGAATCGTCACCTCAG----ATCATATGCTATCAACTCA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     595430 142 +    730504 -GAAAGTATCGTGCACGCACgtgtgtatgtgtgtgtgtgCGCGCGCACGTGTGCATGCGTGCACGC----------------AGACAAGGGATGGAGTCAGGGCCAACGGACAGGGACATGGTATCAGTCGTCACCTCAG----ATCACTTGCTATCAACTGG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           109403 124 +  18854210 -GAAAGTATCAtgtatgtatgtgtgtgtgtctgcat------------------atgtgtgtgtgC----------------AGTCAGGGGATGGAATCAGAGCCAACAAACAGGGACATCATATTAATCATCACCTCAG----ATCATTTGTTATCAACTAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57930719 101 -  94987271 ---------TGT----------------------------------------------GTGCGTGCGTGTGTGTCTGAACATAGACAAATAACGAAGTCAG-GCCTACAGACAGG--CCTGGTATTCATTATCACCTCTG----GTCATTTGCTATCAATTTG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26227348  96 +  26524999 AGAAAGTG-CAT----------------------------------------------TTGTGAGA----------------AGCCAAGAGATGGAGTCAAAGCCAATGGACAGAGACTTCATCTAAATGATTACCTCAG----ATCATCCACTCCAAACTGA
i canFam3.chr35            C 0 I 631
s dasNov3.JH582591            35959  60 +    102524 --------------------------------------------------------------GAGA----------------AGTCCAGGGATG------GACCCAACAGGGGGA-------------------CCTCAGGACAACCACTTGTTAGCGCCGAG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               101446 135 + 123392446 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=484391.000000
s hg38.chr6_GL000254v2_alt   887061 44 +   4827813 GGCACAGATGCCAAGAGGAGGCCCCACAAGAAA----ACCAAGGGAAA
s panTro5.chr6             29849829 44 + 175400573 GGCACAGATGCCAAGAGGAGGCCCCACAAGAAA----ACCAAGGGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30084192 44 + 173848474 GGCACAGATGCCAAGAGGAGGCCCCACAAGAAA----ACCAAGGGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5890818 44 +   6154872 GGCACAGATGCCAAGAGGAGGCCCCACAAGAAA----ACCAAGGGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30080404 44 + 172585720 GGCACAGATGCCGAAAGGAGGCCCCACAAGAAA----ACCAAGGGGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29742946 44 - 170955103 GGCACAGATGCCGAAAGGAGGCCCCACAAGAAA----ACCAAGGGGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2791644 44 -   2996164 GGCACAGATGCCGAAAGGAGGCCCCACAAGAAA----ACCAAGGGGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     542703 44 +    766320 GGCACAGATGCCGAAAGGAGGCCCCACAAGAAA----ACCAAGGAGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28998803 44 -  71996105 GGCACAGATGCCGAAAGGAGGCCCCACAAGAAA----ACCAAGGGGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     175010 44 +    290775 GGCACAGATGCCGAAAGGAGGCCCCACAAGAAA----ACCAAGGAGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2633718 44 -   3067355 GGCACAGATGCCGAGAGGAGGCCCCACAAGAAA----ACCAAGGGGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30075662 44 + 171630274 GGCACAGATGCCCAGAGGAGGCCCCAGGAGAAA----ACCGAGGGGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           222283 44 -    242197 GGCACAGATGCCGAGAGGAGGCCCCAGGAGAAA----ACCAAGGGGAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     216017 44 -   1771730 GGCACAGATGCCAAGAGGAGGCCCCAGGAGAAA----ACCGAGGGGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     297993 44 -    457564 GGCACAGATACCGAGAGGAGGCCCCAGGAGAAA----ACCGAGGGGAA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     595572 44 +    730504 AGCAGAGAGGCAACGAGGAGATCCCGCGAGAAA----ACTGAGGAAGA
i proCoq1.NW_012152574v1   C 0 I 1
s otoGar3.GL873550           109527 44 +  18854210 AACAGAGATGGAGAGAGGAGATCAAAGGAGAAA----ACCAAGGTATA
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57930820 48 -  94987271 AGCAGAGATGCAGTGAGGAGGACCCAGGAGAAAAACCACCAGTAGAAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26228075 39 +  26524999 AGCACATGTGCAGAGAG-----CCCACCAGACA----GCCAGGGGATG
i canFam3.chr35            I 631 C 0
s dasNov3.JH582591            36019 28 +    102524 CTCGGAGGGGCCTCGCGGAGACCCCAGG--------------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               101446 135 + 123392446 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1829556.000000
s hg38.chr6_GL000254v2_alt   887105 111 +   4827813 -CTCCCACCCAGTGCC-CCTCCCT-CTTCAGAT-CCAACTCCACCTCACAAAAAACTTTCCGGGCTTCAGTCTCATAGAAAAGTCCCACGATGATTCGGGCATCCTGGCGCTAC--A
s panTro5.chr6             29849873 113 + 175400573 -CTCCCACCCAGTGCC-CCTCCCT-CTTCAGAT-CCAACTCCACCTCACAAAAAACTTTCCGGGCTTCAGTCTCATAGAAAAGTCCCACGATGATTCGGGCATCCTGGCGCTACAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30084236 113 + 173848474 -CTCCCACCCAGTGCC-CCTCCCT-CTTCAGAT-CCAACTCCACCTCACAAAAAACTTTCCGGGCTTCAGTCTCATAGAAAAGTCCCACGATGATTCGGGCATCCTGGCGCTACAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5890862 113 +   6154872 -CTCCCACCCAGTACC-CCTCCCT-CTTCAGAT-CCAACTCCACCTCACAAAAAACTTTCCGGGCTTCAGTCTCATAGAAAAGTCCCACGATGATTCGGGCATCCTGGCGCTACAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30080448 113 + 172585720 -TTCCCACCCAGTGCC-CCTCCCT-CTTCAGAT-CCAACTCCACCTCACAAAAAACTTTCCGGGCTTCAGTCTCATAGAAAAGTCCCACGATGATTCGGGCATCCTGGCGCTACAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29742990 113 - 170955103 -TTCCCACCCAGTGCC-CCTCCCT-CTTCAGAT-CCAACTCCACCTCACAAAAAACTTTCCGGGCTTCAGTCTCATAGAAAAGTCCCACGATGATTCGGGCATCCTGGCGCTACAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2791688 113 -   2996164 -TTCCCACCCAGGGCC-CCTCCCT-CTTCAGAT-CCAACTCCACCTCACAAAAAACTTTCCGGGCTTCAGTCTCATAGAAAAGTCCCACGATGATTCGGGCATCCTGGCGCTACAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     542747 113 +    766320 -TTCCCACCCAGTGCC-CCTCCCT-CTTCAGAT-CCAACTCCACCTCACAAAAAACTTTCCGGGCTTCAGTCTCATAGAAAAGTCCCACGATGATTCGGGCATCCTGGCGCTACAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28998847 113 -  71996105 -TTCCCACCCAGTGCC-CCTCCCT-CTTCAGAT-CCAACTCCACCTCACAAAAAACTTTCCGGGCTTCAGTCTCATAGAAAAGTCCCACGATGATTCGGGCATCCTGGCGCTACAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     175054 113 +    290775 -TTCCCACCCAGTGCC-CCTCCCT-CTTCAGAT-CCAACTCCACCTCACAAAAAACTTTCCGGGCTTCAGTCTCATAGAAAAGTCCCACGATGATTCGGGCATCCTGGCGCTACAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2633762 113 -   3067355 -TTCCCACCCAGTGCC-CCTCCCT-CTTCAGAT-CCAACTCCACCTCACAAAAAACTTTCCGGGCTTCAGTCTCATAGAAAAGTCCCACGATGATTCGGGCATCCTGGCGCTACAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30075706 113 + 171630274 -CTGCCACCCAGTGCC-CCTCCCT-CTTCAGAT-CCAACTCTACCTCACAAAAAACTTTCCGAGCTTCAGTCTCATAGAAGAGTCCCACGATGATTCGGGCATCCTGGCGCTACAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           222327 113 -    242197 -CTCCCACCCAGTGTC-CCTCCCT-CTTCAGAT-CCAACTCTACCTCGCAAAAAACTTTCCGAGCTTCAGTCTCATAGAAGAGTCCCACGATGATTCGGGCATCCTGGCGCTACAGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     216061 113 -   1771730 -CTCCCACCCAGTGCC-CCTCCCT-CTTCAGGT-CCAACTCTACCTCACAAAAAACTTTCCGAGCTTCAGTCTCATAGAAGAGTCCCACGATGATTCGTGCATCCTGGCGCTACAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     298037 113 -    457564 -CTCCCACCCAGTGCC-CCTCCCT-CTTCAGAT-CCAACTCTACCTCACAAAAAACTTTCCGAGCTTCAGTCTCATAGAAGAGTCCCACGATGATTCGGGCATCCTGGCGCTACAGA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               101581 112 + 123392446 -CACCCACCGGGTCCC-ACTCCCT-CTTCAGATCCCAACCCCACCTCACAAAACACTTTCCGGGCTTCAGTCTCATAGAAGAGTCCCACGATGATGCGGGCATCCTGGCGCTACA--
i micMur3.chr6             I 135 I 33
s proCoq1.NW_012152574v1     595617 112 +    730504 -CACCCGCCCGGTCCC-ACTGCCT-CTTCAGATCCCAACCCCACCTCGCAAAACACTTTCCGGGCTTCAGTCTCATAGAAAAGTCCCACGATGATTCGGGCATCCTGGCGCTACA--
i proCoq1.NW_012152574v1   I 1 I 2
s otoGar3.GL873550           109572 112 +  18854210 -TGCCTATCCAGTTCC-CCTCCCA-GTTCAGATTTCAATCCTACCTCACAAAAGACTTTCCGGGCTTCAGTCTCATAGAAAAGTCCCACGATGATTCGGGCATCCTGGCGCTACA--
i otoGar3.GL873550         I 1 I 2
s mm10.chr17               57930868 113 -  94987271 --GCCCATCCAGCCCTGCCTCCCTGGTCCAGATTCCATCTCCACCTCACAAAAAACTTTCCGGGCTTCGGTCTCATAGAAAAGTCCCACGATGATTCGAGCATCTTGACGCTATA--
i mm10.chr17               C 0 I 2
s canFam3.chr35            26228114 105 +  26524999 -----GAGCCGA---C-CCTCCCT-CTCCAGATTCCAACTCTACCTCACAGAACACTTTCCGGGCTTCAGTCTCATAGAAAAGTCCCACGATGATTCGGGCATCCTGGCGCTACA--
i canFam3.chr35            C 0 I 2
s dasNov3.JH582591            36047 111 +    102524 CTCCGCGCCCACCACC-CCGCTCT-GT--GGATTCCAGCTGCACCTCGCAGAACACTTTCCGGGCTTCAGTCTCGTAGAAGAGTCCCACGATGATTCGGGCATCCTGGCGCTGCA--
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=527701.000000
s hg38.chr6_GL000254v2_alt   887216 51 +   4827813 ACAGAGAAAGAAAC--AGCTCCTGAGGGATGCCCGGGAATGCCTGAGG----GGCTA-------
s panTro5.chr6             29849986 51 + 175400573 ACAGAGAAAGAAAC--AGCTCCTGAGGGATGCCCGGGAATGCCTGAGG----GGCTA-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30084349 51 + 173848474 ACAGAGAAAGAAAC--AGCTCCTGAGGGATGCCCGGGAATGCCTGAGG----GGCTA-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5890975 51 +   6154872 ACAGAGACAGAAAC--AGCTCCTGAGGGATGACCGGGAATGCCTGAGG----GGCTA-------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30080561 51 + 172585720 ACAGAGAGAGAAAC--AGCTCCTGAGGGATGTCTGGGAATGCCTGAGG----GGCTA-------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29743103 51 - 170955103 ACAGAGAGAGAAAC--AGCTCCTGAGGGATGTCTGGGAATGCCTGAGG----GGCTA-------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2791801 51 -   2996164 ACAGAGAGAGAAAC--AGCTCCTGAGGGATGTCTGGGAATGCCTGAGG----GGCTA-------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     542860 51 +    766320 ACAGAGAGAGAAAC--AGCTCCTCAGGGACGTCTGGGAATGCCTGAGG----GGCTA-------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28998960 51 -  71996105 ACAGAGAGAGAAAC--AGCTCCTGAGGGACGTCTGGGAATGCCTGAGG----GGCTA-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     175167 51 +    290775 ACAGAGAGAGAAAC--AGCTCCTCAGGGACGTCTGGGAATGCCTGAGG----GGCTA-------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2633875 51 -   3067355 ACAGAGAGAGAAAC--AGCTCCTGAGGGACATCTGAGAATGCCTGAGG----GGCTA-------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30075819 49 + 171630274 AC--AGAGAGAAAC--AGCTCCTCAGGGATGCTGGGGAATGCCTGAAG----GGCTA-------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           222440 51 -    242197 ACAGAGAGAGAAAC--AGCTCCTCAGGGATGCCGAGGAATGCCTGAGG----GGCTA-------
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     216174 51 -   1771730 ACAGAGAGAGAAAC--AGCTCCTCAGGGACGCCGGGGAATGCCTGAGG----GGCTA-------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     298150 51 -    457564 ACAGAGAGAGAAAC--AGCTCCTCAGGGATGCTGGGGAATGCCTGAGG----GGCTA-------
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     595731 32 +    730504 ATGGAGAGAGAAACAGAGC---------------------TCCTGAGG----GGCTG-------
i proCoq1.NW_012152574v1   I 2 C 0
s otoGar3.GL873550           109686 53 +  18854210 ATGGAGAGAGAAACAGAGCTCCTGAAGGACACCTGAGAATTCCTGAGG----GGCTC-------
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               57930983 52 -  94987271 ACAGAAACAGAGACGGAGCTCCTGAGGGATG-CTAAGAGCGCCTGAGG----GGTTA-------
i mm10.chr17               I 2 C 0
s canFam3.chr35            26228221 29 +  26524999 TCGGAGACAAATAG--AGCTCATGACAAACA---------------------------------
i canFam3.chr35            I 2 C 0
s dasNov3.JH582591            36158 56 +    102524 --GGATGAGAAAAG--AGCTCCTGAGGGGCCC----GAGCGCCCGCGGGCTCGGCCAAGTGCTC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               101693 33 + 123392446 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1699080.000000
s hg38.chr6_GL000254v2_alt   887267 138 +   4827813 AGCCAGA-----------------------TGTCTTCACAG-------CTTTGATTT--------------------------------CCCATCCCAAAGTGCTTAGTGCAGGGTAACGCTCAACGTAT----AGTGAATAAACGTCAACTGGAAGATGG--------AGCTAAACTTCCCCAGGAGATGCTATTGCCTCAGAGAATCA-AA
s panTro5.chr6             29850037 138 + 175400573 AGCCAGA-----------------------CGTCTTCACAG-------CTTTGATTT--------------------------------CCCATCCCAAAGTGCTTAGTGCAGGGTAACGCTCAACGTAT----AGTGAATAAACATCAACTGGAAGATGG--------AGCTAAACTTCCCCAGGAGATGCTATTGCCTCAGAGAATCA-AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30084400 138 + 173848474 AGCCAGA-----------------------CGTCTTCACAG-------CTTTGATTT--------------------------------CCCATCCCAAAGTGCTTAGTGCAGGGTAACGCTCAACGTAT----AGTGAATAAACATCAACTGGAAGATGG--------AGCTAAACTTCCCCAGGAGATGCTATTGCCTCAGAGAATCA-AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5891026 138 +   6154872 AGCCAGA-----------------------CATCTTCACAG-------CTTTGATTT--------------------------------CCCATCCCAAAGTGCTTAGTGCAGGGTAATGCTCAACGTAT----AGCGAATAAACGTCAACTGGAAGATGG--------AGCTAAACTTCCCCAGGAGATGCTATTGCCTCAGAGAATCA-AA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30080612 138 + 172585720 AGCCAGG-----------------------CATCTTCGCAG-------CTTTGATTT--------------------------------CCCATCCCAAAGTGCTTAGTGCAGGGTAATGCTCAATGCAT----AGTGGATAAACGTCAATTGGAAGATGG--------AGCTAAACTTCCCCAGGAGATGCTATTGCCTCAGAGAATCA-AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29743154 138 - 170955103 AGCCAGG-----------------------CATCTTCGCAG-------CTTTGATTT--------------------------------CCCATCCCAAAGTGCTTAGTGCAGGGTAATGCTCAATGCAT----AGTGGATAAACGTCAATTGGAAGATGG--------AGCTAAACTTCCCCAGGAGATGCTATTGCCTCAGAGAATCA-AA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2791852 138 -   2996164 AGCCAGG-----------------------CATCTTCGCAG-------CTTTGATTT--------------------------------CCCATCCCAAAGTGCTTAGTGCAGGGTAATGCTCAATGCAT----AGTGGATAAACGTCAATTGGAAGATGG--------AGCTAAACTTCCCCAGGAGATGCTATTGCCTCAGAGAATCA-AA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     542911 138 +    766320 AGCCAGG-----------------------CATCTTCTCAG-------CTTTGATTT--------------------------------CCCATCCCAAAGTGCTTAGTGCAGGGTAACGCTCAATGTAT----AGTGGATAAATGTCAATTGGAAGATGG--------AGCTAAACTTCCCCAGGAGATGCTATTGCCTCAGGGAATCA-AA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28999011 138 -  71996105 AGCCAGG-----------------------CATCTTCGCAG-------CTTTGATTT--------------------------------CCCATCCCAAAGTGCTTAGTGCAGGGTAACGCTCAATGTAT----AGTGGATAAATGTCAATTGGAAGATGG--------AGCTAAACTTCCCCAGGAGATGCTATTGCCTCAGAGAATCA-AA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     175218 138 +    290775 AGCCAGG-----------------------CATCTTCGCAG-------CTTTGATTT--------------------------------CCCATCCCAAAGTGCTTAGTGCAGGGTAACGCTCAATGTAT----AGTGGATAAATGTCAATTGGAAGATGG--------AGCTAAACTTCCCCAGGAGATGCTATTGCCTCAGGGAATCA-AA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2633926 138 -   3067355 AGCCAGG-----------------------CATCTTCGCAG-------CTTTGATTT--------------------------------CCCATCCCAAAGTGCTTAGTGCACGGTAACGCTCAATGCAT----AGTGGATAAACGTCAACTGGAAGATGG--------AGCTAAACTTCCCCAGGAGATGCTATTGCCTCAGAGAATCA-AA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30075868 146 + 171630274 AGCCAGG-----------------------CGCCTTCACAG-------CTTTGATTT--------------------------------CCCATCCCTAAGTGCTCAGTGCAGGGTAATGCTCAACACGT----AGTGGATAAACATCAACTGGAAGATGGATGTTTCTAACTAAACTTCCCCAGGAGATGTTATTGCCTCAGGGAATCA-AA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           222491 146 -    242197 AGTCAGG-----------------------CGCCTTCACAG-------CTTTGATTT--------------------------------CCCATCCCTAAGTGCTCAGTGCAGGGTAATGCTCAACACGT----AGTGGATAAACGTCAACTGGAAGATGGACGTTTCTAACTAAACTTCCCCAGGAGATGTTATTGCCTCGGGGAATCA-AA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     216225 146 -   1771730 AGCCAGG-----------------------CGCCTTCACAG-------TTTTGATTT--------------------------------CCCATCCCTAAGTGCTCAGTGCAGGGTAATGCTCAGCACGT----AGTGGATAAACGTCAACTGGAAGATAGACGTTTCTAACTAAACTTCCCCAGGAGATGTTATTGCCTCAAGGAATCA-AA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     298201 146 -    457564 AGCCAGG-----------------------CGCCTTCACAG-------CTTTGATTT--------------------------------CCCATCCCTAAGTGCTCAGTGCAGGATAATGCTCAACACAT----AGTGGATAAACGTCAACTGGAAGATGGACGTTTCTAACTAAACTTCCCCAGGAGATGTTATTGCCTCAGGGAATCA-AA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               101726 138 + 123392446 -AGCCAG-----------------------CACCTTCTCAA-------CTTCGATTT--------------------------------CCCATCCCAAAGTGCTTAGGGAAGGACAGTGTTCAAAGGAT----AGTAGATAAATGTCTACCGGAAGGTGG--------AGCCAAACCTCCCCAGGAGTCGCTGCTGCCTCCCAGAATCACAC
i micMur3.chr6             I 33 C 0
s proCoq1.NW_012152574v1     595763 136 +    730504 AGCCCAG-----------------------CACCTTCTCAA-------CTTCAATTT--------------------------------CCCATCCCAAAGTGCTTAGTGAAAGACAGTGCTCTAAGGAC----AGTAGATAAATGTCAACT-GAAGATGG--------AGCCAAACTTCCCCAGG-GTCGCTGCTGCCTCACAGAATCA-AA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           109739 137 +  18854210 AGCCAGG-----------------------TATGGCTACGG-------CTTTGATTT--------------------------------CCCATCCCAAAGTGCTTAGTGAAGGATAGTGTTCAATGCAT----AGTGGATAAATGTCAACCAGAAGATGA--------AGGAAAACTTCCCCCGA-TATGCTACTGCTTCACAGAATCA-AA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57931035 141 -  94987271 AGCCAG------------------------TGCTTTCTAAT-------CGTTGATTT--------------------------------CCTAGCTCCAAGTGCTTAGTGCAAAGAAATGTTCAGTGAATGGGCAGTGGATAAATGTCAACTGGAAGACGG--------AACTAAACCTTCCCAGGAGACTGAGCCGTCTCACAGAATGA-AC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26228250 136 +  26524999 AAGCAAG-----------------------CACTTGCACAG-------CTGTGATTT--------------------------------TTT-TGCATGAGTGCATGTTGCAGGGTTCTGCTCGAGGGGT----GCTGGATTAATGCCACCTGGATGAGGA--------AAATAAACTT-CCCAGGAGATGGTACTATCTCCCAGAATCA-GA
i canFam3.chr35            C 0 I 244
s dasNov3.JH582591            36214 184 +    102524 GGCCAGGGGACGCGGCCGCTGGAAGGAGCACATCGCCCCAGGAGAAGACCCCGACCTGCCCACCTGTCTGTCTCCAGCTGGTCCCTCCCCCCACCCCAGA----CCAGCTCCGGGTTGGGCCCAGCACCT---CCGGGGGT-----CCCACCTTCAGGTGA--------GCCC--ACTGCCCCCAGGGGTCCCAC--CTTCAGGTAAG-----
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=3349755.000000
s hg38.chr6_GL000254v2_alt   887405 225 +   4827813 ACCTGCCCCCGCCTGGCTTTCCTCTCCAACCAG--TCAC-TGTCC--------CCCAGCTT-----------------------GGTCCCTCCGTAAACAGAGCCCACCAC-----------------------------------------------------------TCCCAGCCATCTGACCTTCAGGTTTTTGACGGGCACAGCTGGATCTGAGAAGAAACTCTGGCGGAAAGTAATCTCAATTCCAGCCTCCTTCACTCGTTCCTCCAGGTCGTCCAGAGTCTTGGGTGGGAATAAAAAACAAGTTGGAAAA
s panTro5.chr6             29850175 225 + 175400573 ACCTGCCCCCGCCTGGCTTTCCTCTCCAACCAG--TCAC-TGTCC--------CCCAGCTT-----------------------GGTCCCTCCGTAAACAGAGCCCACCAC-----------------------------------------------------------TCCCAGCCATCTGACCTTCAGGTTTTTGACGGGCACAGCTGGATCTGAGAAGAAACTCTGGCGGAAAGTAATCTCAATTCCAGCCTCCTTCACTCGTTCCTCCAGGTCGTCCAGAGTCTTGGGTGGGAATAAAAAACAAGTTGGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30084538 225 + 173848474 ACCTGCCCCCGCCTGGCTTTCCTCTCCAACCAG--TCAC-TGTCC--------CCCAGCTT-----------------------GGTCCCTCCGTAAACAGAGCCCACCAC-----------------------------------------------------------TCCCAGCCATCTGACCTTCAGGTTTTTGACGGGCACAGCTGGATCTGAGAAGAAACTCTGGCGGAAAGTAATCTCAATTCCAGCCTCCTTCACTCGTTCCTCCAGGTCGTCCAGAGTCTTGGGTGGGAATAAAAAACAAGTTGGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5891164 225 +   6154872 ACCTGCCCCCGCCTGGCTTTCCTCTCCAACCAG--TCAC-TGTCC--------CCCAGCTT-----------------------GGTCCCTCCGTAAACAGAGCCCACCAC-----------------------------------------------------------TCCCAGCCATCTGACCTTCAGGTTTTTGACGGGCACAGCTGGATCTGAGAAGAAACTCTGGCGGAAAGTAATCTCAATTCCAGCCTCCTTCACTCTTTCCTCCAGGTCATCCAGAGTCTTGGGTGGGAATAAAAAACAAGTTGGAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30080750 225 + 172585720 ACCTGCCCCCGCCTGGCTTTCCTCTCCAACCAG--CCAC-TGTCC--------CCCAGCTT-----------------------GGTCCCTCTGTAAACAGAGCCCACCAC-----------------------------------------------------------TTCCGGCCATCTGACCTTCAGGTTTTTGACAGGCACAGCCGGATCTGAGAAGAAACTCTGGCGGAAAGTAATCTCAATTCCAGCCTCCTTCACTCGTTCCTCCAGGTCGTCCAGAGTCTTGGGTGGGAATGACAAACAAGTTGGAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29743292 225 - 170955103 ACCTGCCCCCGCCTGGCTTTCCTCTCCAACCAG--CCAC-TGTCC--------CCCAGCTT-----------------------GGTCCCTCTGTAAACAGAGCCCACCAC-----------------------------------------------------------TTCCGGCCATCTGACCTTCAGGTTTTTGACAGGCACAGCCGGATCTGAGAAGAAACTCTGGCGGAAAGTAATCTCAATTCCAGCCTCCTTCACTCGTTCCTCCAGGTCGTCCAGAGTCTTGGGTGGGAATGACAAACAAGTTGGAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2791990 225 -   2996164 ACCTGCCCCCGCCTGGCTTTCCTCTCCAACCAG--CCAC-TGTCC--------CCCAGCTT-----------------------GGTCCCTCTGTAAACAGAGCCCACCAC-----------------------------------------------------------TTCTGGCCATCTGACCTTCAGGTTTTTGACAGGCACAGCCGGATCTGAGAAGAAACTCTGGCGGAAAGTAATCTCAATTCCAGCCTCCTTCACTCGTTCCTCCAGGTCGTCCAGAGTCTTGGGTGGGAATGACAAACAAGTTGGAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     543049 225 +    766320 ACCTGCCCCTGCCTGGCTTTCCTCTCCAACCAG--CCAC-TGTCC--------CCTAGCTT-----------------------GGTCCCTCTGTAAACAGAGCCCACCAC-----------------------------------------------------------TTCTGGCCATCTGACCTTCAGGTTTTTGACAGGCACAGCCGGATCTGAGAAGAAACTCTGGCGGAAAGTAATCTCAATTCCAGCCTCCTTCACTCGTTCCTCCAGGTCGTCCAGAGTCTTGGGTGGGAATGAAAAACAAGTTGGAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28999149 225 -  71996105 ACCTGCCCCTGCCTGGCTTTCCTCTCCAACCAG--CCAC-TGTCC--------CCCAGCTT-----------------------GGTTCCTCTGTAAACAGAGCCCACCAC-----------------------------------------------------------TTCCGGCCATCTGACCTTCAGGTTTTTGACAGGCACAGCTGGATCTGAGAAGAAACTCTGGCGGAAAGTAATCTCAATTCCAGCCTCCTTCACTCGTTCCTCCAGGTCGTCCAGAGTCTTGGGTGGGAATGAAAAACAAGTTGGAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     175356 225 +    290775 ACCTGCCCCTGCCTGGCTTTCCTCTCCAACCAG--CCAC-TGTCC--------CCTAGCTT-----------------------GGTCCCTCTGTAAACAGAGCCCACCAC-----------------------------------------------------------TTCTGGCCATCTGACCTTCAGGTTTTTGACAGGCACAGCCGGATCTGAGAAGAAACTCTGGCGGAAAGTAATCTCAATTCCAGCCTCCTTCACTCGTTCCTCCAGGTCGTCCAGAGTCTTGGGTGGGAATGAAAAACAAGTTGGAAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2634064 224 -   3067355 ACCTGCCCC-GCCTTGCTTTCCTCTCCAACCAG--CCCC-TGTCC--------CCCAGCTT-----------------------GGTCCCTCTGTAAACAGAGCCCACCAC-----------------------------------------------------------TTCCAGCCACCTGACCTTCAGGTTTTTGACAGGCACAGCCGGATCTGAGAAGAAACTCTGGCGGAAAGTAATCTCAATTCCAGCCTCCTTCACTCGTTCCTCCAGGTCGTCCAGAGTCTTGGGTGGGAATGAAAAACAAGTTGGAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30076014 224 + 171630274 ACCTGCCCCCGCCTGGCTTTCCTCTCCAACCAG--CCAC-TGTCC--------CCCAGCTT------------------------GTCCGTGTGCAAACAGACCCCATCAC-----------------------------------------------------------TCCCGGCCATCTGACCTTCAGGTTTTTGACAGGCACAGCTGGATCTGAGAAAAAACTCTGGCGGAAAGTAATCTCAATTCCAGCCTCCTTCACGCGTTCCTCCAGGTCGTCCAGAGTCTTGGGCGGGAATGAAAAACGAGTTGGAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           222637 224 -    242197 ACCTG-CTCCGCCTCGCTTTTCTCTCCAACCAG--CCAC-TGTCC--------CCCAGCTT-----------------------GGTCCCTCTGCAAACAGACCCCACCAC-----------------------------------------------------------TCCCGGCCATCTGACCTTCAGGTTTTTGACAGGCACAGCTGGATCTGAGAAAAAACTCTGGCGGAAAGTAATCTCGATTCCAGCCTCTTTCACTCGTTCCTCCAGGTCGTCCAGAGTCTTGGGCGGGAATGAAAAACGAGTTGGAAAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     216371 223 -   1771730 ACCTG-CTCCGCCTGGCTTTCCTCTCCAACCAG--CCAC-TGTCC--------CCTAGCTT-----------------------GGTCCCTCTGCAAACAGATCCCACCAC-----------------------------------------------------------TCCCAGCCATCTGACCTTCAGATTTTTGACAGGCACAGCTGGATCTGAGAAAAAACTCTGGCGGAAAGTAATCTCGATTCCAGCCTCCTTCACTCGTTCCTCCAGGTCATCCAGAGTCTTGGGCAGGAATGAAAAACGA-TTGGAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     298347 224 -    457564 ACCTG-CCCCGCCTGGCTTTCCTCTCCAACCAG--CCAC-TGTCC--------CCCAGCTT-----------------------GATCCGTCTGCAAACAGACCCCACCAC-----------------------------------------------------------TCCCGGCCATCTGACCTTCAGGTTTTTGACAGGCACAGCTGGATCTGAGAAAAAACTCTGGCGGAAAGTAATCTCAATTCCAGCCTCCTTCACTCGTTCCTCCAGGTCGTCCAGAGTCTTGGGCAGGAAAGAAAAACGAGTTGGCAAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               101864 204 + 123392446 AACTTCCCCCACCTGG--CTCCTCTCCAGCCAA--CCAC-CGTCC--------CTCTGCCC-----------------------CG-CCCTCTGCAGACAGAG-----------------------------------------------------------------------------CCCACCTTAAGGTTTTTGACAGGCACAGCTGGATCTGAGAAGAAACTCTGGCGGAAAGTAATCTCGATCCCAGCCTCCTTCACTCGTTCCTCCAGGTCGTCCAGAGTCTTGGGTGGGAATGAGAAATAAGTAGGAAAA
i micMur3.chr6             C 0 I 32
s proCoq1.NW_012152574v1     595899 224 +    730504 ACCTCCCCCCACAGGGCTCTCCTCTCCAGCCAA--CCAC-CATCC--------CTCCGCCC-----------------------CG-CCCTCTGCAAAGGCAGCCCACCAC-----------------------------------------------------------GCCCAGCAGTCCCACCTTAAGGTTTTTGACAGGCACAGCTGGATCTGAGAAGAAACTCTGGCGGAAAGTAATCTCGATTCCAGCCTCCTTCACTCGTTCCTCCAGGTCATCCAGAGTCTTGGGCGGGAATGAGAAATAAGTAGGAAAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           109876 207 +  18854210 AC----------------TTCCTCTCCCACCAA--CCAC-AGTCC--------TCCTACCT-----------------------AGTTCCTATGCAAA--CAGCCCACCAT-----------------------------------------------------------GCCCAGATATCCCACCTTCAGGTTTTTGACAGGTACAGCTGGATCTGAAAAGAAACTCTGGCGGAAAGTAATCTCGATTCCAGCCTCCTTCACTCGTTCCTCCAGGTCGTCCAGAGTCTTGGGTAGGAATGAAAAATAAATAGGAAAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57931176 271 -  94987271 AACTGCCTCTTCCAGGTTTTCCTCTCCAGCCGA--CCAC----CA--------CCCACGCT-----------------------GATCTCACCGTGGGCTGAGTCCACCATGCCTGCTCTCCCACCTTGCTGACCACCACCCACACCAACCCCAAGGCATGAGCCTACCATCCCTGCTCTCCCACCTTCAGGTTTTTAACAGGCACAGCTGGATCTGAGAAGAAACTCTGTCGAAAAGTGATCTCAATCCCAGCCTCTTTCACTCGCTCCTCCAGGTCATCCAGTGTCTTGGGTGGGGATAAGAAACA----------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26228630 225 +  26524999 CCCTGCCCCTGCCTGGCTCTCCTCTCCAACCTA--CCATGGGTCC--------CCCACCCT-----------------------GGTTCCTCAGCGGCC-GAGCCCACGAC-----------------------------------------------------------CCCCAACCCCTGCACCTTGAGGTTCTTGACAGGCACGGCAGGATCTGAGAAGAAGCTCTGGCGGAAAGTAATCTCAATCCCAGCCTCCTTCACTCGTTCCTCTAGGTCGTCCAGAGTCTTGGGTGGGAATGAGAAACAAATGGAGAAA
i canFam3.chr35            I 244 C 0
s dasNov3.JH582591            36398 254 +    102524 CCCAGCACCTCCAGGGGTCCCACCTTCAGGTGAGCCCAC-TGTCCCCAGGGGTCCCACCTTCAGGTGAGCCCACCGCCCCCAGGGGTCCCACCTTCAGGTGGGCCCACCAC-----------------------------------------------------------TCCCGGGGGTCCCACCTTTAGGTTTTTCACTGGCACCGCTGGGTCGGAGAAGAAACTCTGGCGGAAAGTGATCTCGATCCCAGCCTCCTTCACTCGTTCCTCGAGATCATCCAGAGTCTTGGGTGGAAATGA-AAACAAGGAGGA---
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=330115.000000
s hg38.chr6_GL000254v2_alt   887630 36 +   4827813 ACACGGGGTGCATGAGGGAATAAAGACCAGAGAGGT
s panTro5.chr6             29850400 36 + 175400573 ACACAGGGTGCATGAGGGAATAAAGACCAGAAAGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30084763 36 + 173848474 ACACAGGGTGCATGAGGGAATAAAGACCAGAAAGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5891389 36 +   6154872 ACACGGGGTGCATGAGGGAGTAAAGACCAGAGAGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30080975 35 + 172585720 ACACA-GGTGCATGAGGGAATAAAGACTAGAGAGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29743517 35 - 170955103 ACACA-GGTGCATGAGGGAATAAAGACTAGAGAGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2792215 35 -   2996164 ACACA-GGTGCATGAGGGAATAAAGACCAGAGAGGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     543274 35 +    766320 ACACA-GGTGCATGAGGGAATAAAGACCAGAGAGGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28999374 35 -  71996105 ACACA-GGTGCGTGAGGGAATAAAGACCAGAGAGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     175581 35 +    290775 ACACA-GGTGCATGAGGGAATAAAGACCAGAGAGGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2634288 35 -   3067355 ACACA-GGTGCATGAGGGAATAAAGACCAGAGAGGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30076238 36 + 171630274 ATACAGGGTACATGAGGGGATAAAGACCAGAGAGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           222861 36 -    242197 ACACAGGGTGTATGAGGGGATAAAGACCAGAAAGGT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     216594 36 -   1771730 ACACGGAGTGCATGAAGGGATAAAGACCAGAGAGGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     298571 36 -    457564 ACACAGCGTGCATGAGGGGATAAAGACCAGAGAGGT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     596123 33 +    730504 ACGTGGGGTGCACGACGGAGCAAAGACCAGAGA---
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           110083 29 +  18854210 ACAT----TGTATGATGGAGTAAAGACCAGACA---
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57931447 27 -  94987271 ---------TCAAGAGTATAGATAGAGCAGAGCTTG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26228855 36 +  26524999 ACATGGGGCATGCCATGGGGTAAAGACCGGAGATGT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            36652 23 +    102524 ------GGTGCAC-----AGTAAGGACTGGCTGC--
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               102068 32 + 123392446 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=292089.000000
s hg38.chr6_GL000254v2_alt   887666 29 +   4827813 TAACTGGGGATTTCAGAGC-AATACTCAGA
s panTro5.chr6             29850436 29 + 175400573 TAACTGGGGATTTCAGAGC-AATACTCAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30084799 29 + 173848474 TAACTGGGGATTTCAGAGC-AATACTCAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5891425 26 +   6154872 TAACTGGGGATTTCAGAGC-AATACTC---
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30081010 29 + 172585720 TAACTGGGGATTTCAGAGC-AATACTCAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29743552 29 - 170955103 TAACTGGGGATTTCAGAGC-AATACTCAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2792250 29 -   2996164 TAACTGGGGATTTCAGAGC-AATACTCAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     543309 29 +    766320 TAACTGGGGATTTCAGAGC-AATACTCAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28999409 29 -  71996105 TAACTGGGGATTTCAGAGC-AATACTCAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     175616 29 +    290775 TAACTGGGGATTTCAGAGC-AATACTCAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2634323 29 -   3067355 TAACTGGGGATTTCAGAGC-AGTACTTAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30076274 29 + 171630274 TAACTGGGGATTTCAGAGC-CATAAGCAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           222897 29 -    242197 TAACTAGGGATTTCAGAGC-AATAAGCAGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     216630 29 -   1771730 TAACTGGGGATTTCAGAGC-AATAAGCAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     298607 29 -    457564 TAACTGGGGATTTCAGAGC-AATAAGCAGA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               102100 29 + 123392446 CAACTGGTGATTACAGAGC-AATTCTCAGA
i micMur3.chr6             I 32 I 143
s proCoq1.NW_012152574v1     596156 29 +    730504 CAACTGGTGATTATGGAGC-AACACTCAGT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           110112 19 +  18854210 ----------TTATACAGC-AATACTCAGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57931474 27 -  94987271 CGGCCAAGAACT---GACCGAATACTCGCA
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            36675 19 +    102524 CACCTGGG------ACAGC--GTCCTC---
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26228891  0 +  26524999 C
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1408356.000000
s hg38.chr6_GL000254v2_alt   887695 141 +   4827813 TAGAGCAAAGAAGCAGCCATTCTGAACCTTCCTTCAACAG---CTTCTG---TCCCTGAAGTGAGGAGTTC----GGGA---AG-GCATCT----GG---TCTTAGGATGTGGATTCCAAGTGGGAAGGTGAATGGTGAGCCCCTGCTG-----AGG-CTCTGTGT--GG
s panTro5.chr6             29850465 141 + 175400573 TAGAGCAAAGAAGCAGCCATTCTGAACCTTCCTTCAACAG---CTTCTG---TCCCTGAAGTGAGGAGTTC----GGGA---AG-GCATCT----GG---TCTTAGGATGTGGATTCCAAGTGGGAAGGTGAATGGTGAGCCCCTGCTG-----AGG-CTCTGTGT--GG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30084828 141 + 173848474 TAGAGCAAAGAAGCAGCCATTCTGAACCTTCCTTCAACAG---CTTCTG---TCCCTGAAGTGAGGAGTTC----GGGA---AG-GCATCT----GG---TCTTAGGATGTGGATTCCAAGTGGGAAGGTGAATGGTGAGCCCCTGCTG-----AGG-CTCTGTGT--GG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5891451 140 +   6154872 -AGAGCAAAGAAGCAGCCATTCTGAACCTTCCTTCAACAG---CTTCTG---TCCCTGAAGTGAGGAGTTC----GGGA---AG-GCATCT----GA---TCTTAGGATGTGGCTTCCAAGTGGGAAGGTGAATGGTGAGCCCCTGCTG-----AGG-CTCTGTGT--GG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30081039 141 + 172585720 CAGAGCAAAGAAACAGCCATTCTGAACCTTCCTTCAACAG---CTTCTG---TCCCTGGAGTGAGGAGTTC----AGGA---AG-GCCTCT----GG---TCTTAGGATATGACTTCCAAGTGGGAAGGTGAATGATGAGCCCCTGCTG-----AGG-CTCTGTGT--GG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29743581 141 - 170955103 CAGAGCAAAGAAACAGCCATTCTGAACCTTCCTTCAACAG---CTTCTG---TCCCTGGAGTGAGGAGTTC----AGGA---AG-GCCTCT----GG---TCTTAGGATATGACTTCCAAGTGGGAAGGTGAATGATGAGCCCCTGCTG-----AGG-CTCTGTGT--GG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2792279 140 -   2996164 CAGAGCAAAGAAACAGCCATTCTGAACCTTCCTTCAACAG---CTTCTG---TCCCTGGAGTGA-GAGTTC----AGGA---AG-GCCTCT----GG---TCTTAGGATATGACTTCCAAGTGGGAAGGTGAATGATGAGCCCCTGCTG-----AGG-CTCTGTGT--GG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     543338 141 +    766320 CAGAGCAAAGAAACAGCCATTCTGAACCTTCCTTCAACAG---CTTCTG---TCCCTGGAGTGAGGAGTTC----AGGA---AG-GCGTCT----GG---TCTTAGGATATGACTTCCAAGTGGGAAGGTGAATGATGAGCCTCTGCTG-----AGG-CTCCGTGT--GG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28999438 140 -  71996105 TAGAGCAAAGAAACAGCCCTTCTGAACCTTCCTTCAACAG---C-TCTG---TCCCTGAAGTGAGGAGTTC----AGGA---AA-GCGTCT----GG---TCTTAGGATATGGCTTCCAAGTGGGAAGGTGAATGATGAGCCCCTGCTG-----AGG-CTCTGTGT--GG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     175645 141 +    290775 CAGAGCAAAGAAACAGCCATTCTGAACCTTCCTTCAACAG---CTTCTG---TCCCTGGAGTGAGGAGTTC----AGGA---AG-GCGTCT----GG---TCTTAGGATATGACTTCCAAGTGGGAAGGTGAATGATGAGCCTCTGCTG-----AGG-CTCCGTGT--GG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2634352 139 -   3067355 TAGAGCAAAG--ACAGCCATTCTGAACCTTCCTTCAACAG---CTTCTG---TCCCTGGAGTGAGGAGTTC----AGGA---AG-GCGTCT----GG---TCTTAGGATATGGCTTCCAAGTGGGAAGGTGAATGATGAGCCCCTGCTG-----AGG-CTCTGTGT--GG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30076303 144 + 171630274 CGCAGCAAAGGAGCAGCCATTCTGAACTTTCCTTCAACAG---CTTCTG---TCCCTGAGGTGAGGAGTTG----GGGAAGGAG-GCGTGT----GG---TCTTAGGATGTGGCTTCCAAGTGGAAAGGTGCACGGCAAGCCCCTGCTG-----AGG-CTATGTGC--CC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           222926 141 -    242197 CACAGCAAAGGAGCAGCCATTCTGAACTTTCCTTCCACAG---CTTCTG---TCCCTGAGGTGAGGAGTTT----GGGA---AG-GTGTCT----GG---TCTTAGGATGTGGCTTCCAAGTGGGAAGGTGCATGGTAAGCCCCTGCTG-----AGG-CTATGTGT--CC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     216659 141 -   1771730 CACAGCAAAGGAGCAGCCATTCTGAACTTTCCTTCAACAG---CTTCTG---TCCCTGAGGTGAGAAGTTT----GGGA---AG-GTGTCT----GG---TCTTAGGATGTGGCTTCCAAGTGGGAAGGTGCATGGTAAGCCCCTGCTA-----AGG-CTATGTGT--CC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     298636 146 -    457564 CATAGCAAAGGAGCAGCCATTCTGAACTTTCCTTCAACAG---CTTCTG---TCCCTGAGGTGAGGAGTTT----GGGA---AG-GTGTCT----GG---TCTTAGGATGTGGCTTCTAAGTGGGAAGGTGCATGGTAAGCCCCTGCTGAGGCTAGG-CTATGTGT--CC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     596185 145 +    730504 ----GCGAAGCGGCAGCCATCCTGAACCTTCCCTCGACAG---CTTCTG---CCCACAAGGTGGGGAGAGCTGAAAGGA---AA-ACATCTGGGGAG---TCTCAGGACACGGCTTACAAGTGGGAAGGTGCATGGTGAGCCGCTCCTG-----TGG-GTCTGTGTCC--
i proCoq1.NW_012152574v1   C 0 I 1
s otoGar3.GL873550           110131 136 +  18854210 ----GCAAAGGAGTATTCATTCTGAACTTTCCTTTAACAG---CTTCTG---CCCA-----TGAGGAGAATTGGAAGGA---AA-GAATAT--TGAG---TCTGAGGACATGGTTTATAAGTGGAAAGGTACATGGTGAGCCCTTCCTA-----TGG-GTCTGTGT----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57931501 132 -  94987271 ----GTGCAGGAATAG--GATCTGAACCTTATTCCAAGAG---CCCCTAAACCCCATGAGGAGAGGATGAA----AGAA---AGTGCCTCC----AG---TCTTAGGAGGCAGCTTCC-------AAGATGCATGACAAGCCCCTCCTC-----AAG-ATCTGTAT--CC
i mm10.chr17               C 0 I 1
s canFam3.chr35            26228891 103 +  26524999 ------------ACAGCACTCCAGAACCCCTCCCCA-------TGTGTG---TCCCTG-GGTGGGGAGAGCTCCAAGGA---AG-GTGTCT--GTGG---TCTCAGGATATAGAT---------------------------CCTACAG-----AGG-ATCTGTGT--CT
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            36694 119 +    102524 -GGGACAAAGGGGCCACCGCTCTGGA-TGTCCTCCAACAGGCAGCTCTG---ACCGGGGATGGCAGGGCTC----AGTG---GG-GAGCGT----GGGCCTCTCAGG--GTGGCTCCC------------------------CATCCTA-----AGGACCATGTCT--G-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               102129 143 + 123392446 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=587952.000000
s hg38.chr6_GL000254v2_alt   887836 48 +   4827813 GGGAAGCCACTCCATTCA-CCC-ACTCCTACCACTGAAGGCAAAGATGGG
s panTro5.chr6             29850606 48 + 175400573 GGGAAGTCACACCATTCA-CCC-ACTCCTACCACTGAAGGCAAAGATGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30084969 48 + 173848474 GGGAAGTCACACCATTCA-CCC-ACTCCTACCACTGAAGGCAAAGATGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5891591 48 +   6154872 GGGAAGCCACTCCATTCA-CCC-ACTCCTACCACTGAAGGCAAAGATGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30081180 48 + 172585720 GGGAAGCCACTCCATTCA-CCC-ACTCCTACCACTGAAGGCAAAGATGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29743722 48 - 170955103 GGGAAGCCACTCCATTCA-CCC-ACTCCTACCACTGAAGGCAAAGATGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2792419 48 -   2996164 GGGAAGCCACTCCATTCA-CCC-ACTCCTACCACTGAAGGCAAAGATGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     543479 48 +    766320 GGGAAGCCACTCCATTCA-CCC-ACTCCTACCACTGAAGGCAAAGATGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28999578 48 -  71996105 GGGAAGCCACTCCATTCA-CCC-ACTCCTACCACTGAGGGCAAAGATGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     175786 48 +    290775 GGGAAGCCACTCCATTCA-CCC-ACTCCTACCACTGAAGGCAAAGATGGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2634491 48 -   3067355 GGGAAGCCACTCCATTCA-CCC-ACTCTTACCACTGAAGGCAAAGATGGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30076447 48 + 171630274 AGGAAACCACACCATTCA-GCC-ACTGCTACCACTGACAGCAAAGATAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           223067 48 -    242197 AGGAAGCCACTCCATTCA-GCC-ACTGCTACCACTGACAGCAAAGATGGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     216800 48 -   1771730 AGGAAGCCACTCCATTCA-GCC-ACTGCTACCACTGACAGCAAAGATGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     298782 48 -    457564 AGGAAGCCACTCCATTCA-GCC-ACTGCTACCACTGACAGCAAAGATGGG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               102272 47 + 123392446 AGGAAGCCACCCTATTCACCCC-ACTCCTATCACTGG-AGC-AAAATGGG
i micMur3.chr6             I 143 C 0
s proCoq1.NW_012152574v1     596331 49 +    730504 AGGAAGACACCCCATTCACCCC-ACTCCTATCACTGACAGCAAAAATGGG
i proCoq1.NW_012152574v1   I 1 C 0
s otoGar3.GL873550           110267 39 +  18854210 ----------CCCATTCACCCC-ATTCCTATTGCTGACAGCAAAAACGGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57931634 35 -  94987271 GGGATCCTGCCCCATCTT-CCC--CTCTTTGGACTTT------------G
i mm10.chr17               I 1 C 0
s canFam3.chr35            26228995 46 +  26524999 GAGAAGTCACCCCATTCA-GCC-CGCCCCACCAC--ACAGTAAAAGTGGG
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            36813 49 +    102524 GGAAGGCCACCCCATTCT-CCCTACGCCCAGCACTGAAGCCAAAACGGGG
i dasNov3.JH582591         C 0 I 3177
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=2904177.000000
s hg38.chr6_GL000254v2_alt   887884 237 +   4827813 GTAAAGAAAC--ATAAAGGAACCAGGAAAAGACAAGGCAAGGACTGGGACAGACAGCATGATGTCAACCTCAAGAGGCAAATGG----------GCAGACAGACAAAGG-ATCAGAGAAGAATGGTCTGAATCA--GAGTGAAAGT-G---GGGGAGGATTAAAGGGCCACTGAACAC---AGTGGATAGAAGACCCAAAGAATAGAATAAAAGGGAGGGAGCAGACTGCCTTCTTCAGATGTAGAGCC------------TG--TA---TTTCCT
s panTro5.chr6             29850654 233 + 175400573 GGAAAGAAAC--ATAAAGGAACCAGGAAAAGACAAGGCAAGGACTGGGACAGACAGCATGATGTCAACCTCAAGAGGCAAATGG----------G----CAGACAAAGG-ATCAGAGAAGAATGGTCTGAATCA--GAGTGAAAGC-G---GGGGAGGATTAAAGGGCCACTGAACAC---AGTGGATAGAAGACCCAAAGAATAGAATAAAAGGGAGGGAGCAGACTGCCTTCTTCAGATGTAGAGCC------------TG--TA---TTTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30085017 237 + 173848474 GGAAAGAAAC--ATAAAGGAACCAGGAAAAGACAAGGCAAGGACTGGGACAGACAGCATGATGTCAACCTCAAGAGGCAAATGG----------GCAGACAGACAAAGG-ATCAGAGAAGAATGGTCTGAATCA--GAGTGAAAGC-G---GGGGAGGATTAAAGGGCCACTGAACAC---AGTGGATAGAAGACCCAAAGAATAGAATAAAAGGGAGGGAGCAGACTGCCTTCTTCAGATGTAGAGCC------------TG--TA---TTTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5891639 237 +   6154872 GGAAAGAAAC--ATAAAGGAACCAGGAAAAGACAAGGCAAGGACTGGGACAGACAGCATGATGTCAACCTCAAGAGGCAAATGG----------GCAGACAGACAAAGG-ATCAGAGAAGAATGGTCTGAATCA--GAGTGAAAGT-G---GGGGAGGATTAAAGGGCCACTGAACAC---AGTGGATAGAAGACCCAAAGAATAGAACAAAAGGGAGGGAGCAGACTGTCTTCTTCAGATGTAGAGGC------------TG--TA---TTTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30081228 226 + 172585720 GGAAGGAAAC--ATAGAGGAACCAGGAAAAGACAAGGCGAGGACTAGGACAGACAGCATGATGTCAACCTCAAGAGGCAAGTGG----------GCAGACAGACA------------AAGAATGGTCTGAATCA--GAGTGAAAGT-G---GGGGAGGATTAAAGGGCCACTGAACAC---AGTGGATAGAAGACCCAAAGAATAGAATAAAAGGAAGGGAGCAGACTGCCTTCTTCAGATGTAGAGCC------------TG--TA---TTTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29743770 226 - 170955103 GGAAGGAAAC--ATAGAGGAACCAGGAAAAGACAAGGCGAGGACTAGGACAGACAGCATGATGTCAACCTCAAGAGGCAAGTGG----------GCAGACAGACA------------AAGAATGGTCTGAATCA--GAGTGAAAGT-G---GGGGAGGATTAAAGGGCCACTGAACAC---AGTGGATAGAAGACCCAAAGAATAGAATAAAAGGAAGGGAGCAGACTGCCTTCTTCAGATGTAGAGCC------------TG--TA---TTTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2792467 226 -   2996164 GGAAGGAAAC--ATAGAGGAACCAGGAAAAGACAAGGCGAGGACTAGGACAGACAGCATGATGTCAACCTCAAGAGGCAAGTGG----------GCAGACAGACA------------AAGAATGGTCTGAATCA--GAGTGAAAGT-G---GGGGAGGATTAAAGGGCCACTGAACAC---AGTGGATAGAAGACCCAAAGAATAGAATAAAAGGAAGGGAGCAGACTGCCTTCTTCAGATGTAGAGCC------------TG--TA---TTTCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     543527 226 +    766320 GGAAGAAAAC--ATAGAGGAACCAGGAAAAGACAAGGCGAGGACTAGGACAGACAGCATGATGTCAACCTCAAGAGGCAAGTGG----------GCAGACAGACA------------AAGAATGGTCTGAATCA--GAGCGAAAGT-G---GGGGAGGATTAAAGGGCCACTGAACAC---AGTGGATAGAAGACCCAAAGAATAGAATAAAAGGAAGGGAGCAGACTGCCTTCTTCAGATGTAGAGCC------------TG--TA---TTTCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28999626 226 -  71996105 GGAAAGAAAC--ATAGAGGAACCAGGAAAAGACAAGGCGAGGACTAGGACAGACAGCATGATGTCAACCTCAAGAGGCAAGTGG----------GCAGACAGACA------------AAGAATGGTCTGAATCA--GAGCAAAAGT-G---GGGGAGGATTAAAGGGCCACTGAACAC---AGTGGATAGAAGACCCAAAGAATAGAATAAAAGGAAGGGAGCAGACTGCCTTCTTCAGATGTAGAGCC------------TG--TA---TTTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     175834 226 +    290775 GGAAGAAAAC--ATAGAGGAACCAGGAAAAGACAAGGCGAGGACTAGGACAGACAGCATGATGTCAACCTCAAGAGGCAAGTGG----------GCAGACAGACA------------AAGAATGGTCTGAATCA--GAGCGAAAGT-G---GGGGAGGATTAAAGGGCCACTGAACAC---AGTGGATAGAAGACCCAAAGAATAGAATAAAAGGAAGGGAGCAGACTGCCTTCTTCAGATGTAGAGCC------------TG--TA---TTTCCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2634539 226 -   3067355 GGAAAGAAAC--ATAGAGGAACCAGGAAAAGACAAGGCGAGGACTAGGACAGACAGCATGATGTCAACCTCAAGAGGCAAGTGG----------GCAGACAGACA------------AAGAATGGTCTGAATCA--GAGCGAAAGT-G---GGGGAGGATTAAAGGGCCACTGAACAC---AGTGGATAGAAGACCCAAAGAATAGAACAAAAGGAAGGGAGCAGACTGCCTTCTTCAGATGTAGAGCC------------TG--TA---TTTCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30076495 237 + 171630274 AGGAAGAAAC--ATAGAGGAACCAGGAAAAGACAAGGCAAGGACTGGGACAGACAGCATGATGTCAACCTCAAGAGGCAAGTGG----------GCAGACAGGCAAAGG-ATCAGAGAAGAATGGTCTGAATCA--GAGCAAAAGT-G---GGGGAGGATTAAAGGGCCACTGAACAC---AGTGGATAGAGGACCTAAAGAATAGAATAAAAGGGAGGGAGCAGACTGCCTTCTTCAGATGTAGAGCC------------TG--TA---TTTCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           223115 237 -    242197 AGAAAGAAAC--ACAGAGGAACCAGGAAAAGGCAAAGCAAGGACTGGGACAGACAGCATGATGTCAACCTCAAGAGGCAAGTGG----------GCAGACAGGCAAAGG-ATCAGAGAAGAATGGTCTGAATCA--GAGCAAAAGT-G---GGGGAGGATTAAAGGGCCACTGAAAAC---AGTGGATAGAGGACCCATAGAATAGAATAAAAGGGAGGGAGCAGACTGCCTTCTTCAGATGTAGAGCC------------TG--TA---TTTCCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     216848 237 -   1771730 AGGAAGAAAC--ATAGAGGAACCAGGAAAAGACAAGGCAAGGACTGGGACAGACAGTATGATGTCAACCTCAAGAGGCAAGTGG----------GCAGACAGGCAAAGG-ATCAGAGAAGAATGGTCTGAATCA--GAGCAAAAGT-G---GGGGAGGATTAAAGGGCCACTGAACAC---AGTGGATAGAGGACCCAAAGAATAGAATAAAAGGGAGGGAGCAGACTGCCTTCTTCAGATGTAGAGCC------------TG--TA---TTTCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     298830 237 -    457564 AGGAAGAAAC--ATAGAGGAACCAGGAAAAGATAAGGCAAGGACTGGGACAGACAGCATGATGTCAACCTCAAGAGGCAAGTGG----------GCAGACAGGCAAAGG-ATCAGAGAAGAATGGTCTGAATCA--GAGCAAAAAT-G---GGGGAGGATTAAAGGGCCACTGAACAC---AGTGGATAGAGGAACCAAAGAATAGAATAAAAGGGAGTGAGCAGACTACCTTCTTCAGATGTAGAGCC------------TG--TA---TTTCCT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               102319 240 + 123392446 GAAAGGGAAA-CATAGAGGAACCAGG-AAAGACCAGGCAGGGACTGGTACAGATGGGATAATATCAACCTCAAGAAGCAAGTAG----------GCAGACAGACAAAAGCATCAGAGAAGAATGGTCTGAATCACTGAGAGAAAAT-G---GGGGAGGATTAAAGAGCCACTGAACACAAGAGTGGATAGAGGCCCCAT--AACGGAATGAAAGGCAGAGAGCAGACTGCCTTCTTCAGACGCAGGGCC------------GG--CC---TTTGC-
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     596380 243 +    730504 GGAAAGGAAA--ACAGAGGAACCAGGAAAAGACCAGGCAGGGACAGGTACAGACAGCATAATATCAACTTCAAGAAGCAAGTGG----------GCAGACAGACAAAAGCATCAGAGAAGAATGGTCTGAATCACTGAGAGAAAGT-G---GGGGAGGATTAAAGAGCCACTGAACATAAGAGTGGATAGAGGCCCCACAGAATGGAATAAAAGGGAGGGAGCGGACTGCCTTCTTCAGATGCAGGGCCG-----------GG--CC---CTTCC-
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           110306 269 +  18854210 GGAAAGGAAAACATAGAGGGACCAGGAAAAGACAAGACAGAGACTGGTATAGATAGTATAATATCAACCCCAAGAGGATAATATCAATGTCAACACCAAGAAACAAAAGGATCAGAGAAGAATGGTCTGAATTACTGAGAGAAAGT-G---GGGGAGGATTAAAGGGCCACTGAAGGTAAGAGTCAAGAGAGGACCTACAGAACAGAATAAAAGGGAGGCAACAGATTGCCTTCTTCAGATGTAGAGCCACGTATTTCCTCCG--CCAGATTTCC-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57931669 237 -  94987271 AGAAGAAAAC--AACGGGGAAAAAAAAAAAG-CAGGGCAGGGTCTGGAATACACAGAATGGTGCCAAC-TCAAGAGGCAAGTGG----------GCAGACCATCAAAAGGATCACAGGAGAATGGACTGAGTCACTGAGGGAAAGT-GAGAAGGGAAAATTAAAGGGCCACTGAAAAT---AAT-----GAAGACTCAAAGAAGAGAAACAAAGAGAAGAATCAGGCTACTTTCTCCAG-TGTGGAGCC------------TGGCCA---TTTCCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26229041 178 +  26524999 GGAAAGACAG--A------------------------CAGGCTCCGGTGTGGACAGGA-----------------------TGG----------GAAAACA--CAGCTGCATCAGAGAAGAAT-CCCTGCACCA--CGGAGACGGTCA---GGGGAGGGTTAAGGGGCCACTGAACAGGAGAGTGGACAGGG---TCCAAGAGTAG-------GAGAGAGGGCCAGCTGTCTTTTTCAGGTTCAGAGCCC-----------TG--CA---T-----
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            36862 3177 +    102524 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=2515426.000000
s hg38.chr6_GL000254v2_alt   888121 236 +   4827813 CTCTACCTCCCCAAATCTCCCTCTTCCCCCTCAACCTCTCC-----TTGTCTGTCGGCTTCTCTCTCTTAGTACCAACTACCAGATCCATGCAGCTGCCTTTCTGCCCctc-tctctcctctccctcattcctctctctc---------------------------t-------------------------------------ctctctttcctctccctctctcctctGTAATCCACTGGCTCCATCCCCTCTGTTCCCATTCACACCCACCCACCACCCCCCTTGAAAGCCTCTGGAATCTG
s panTro5.chr6             29850887 236 + 175400573 CTCTACCTCCCCAAATCTCCCTCTTCCCCCTCAACCTCTCC-----TTGTCTGTCGGCTTCTCTCTCTTAGTACCAACTACCAGATCCATGCAGctgtctttctgcccctc-tctctcctctccctcattcctctctctc---------------------------t-------------------------------------ctctctttcctctccctctctcctctctAATCCACTGGCTCCATCCCCTCTGTTCCCATTCGCACCCACCCACCACCCCCCTTGAAAGCCTCTGGAATCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30085254 236 + 173848474 CTCTACCTCCCCAAATCTCCCTCTTCCCCCTCAACCTCTCC-----TTGTCTGTCGGCTTCTCTCTCTTAGTACCAACTACCAGATCCATGCAGctgtctttctgcccctc-tctctcctctccctcattcctctctctc---------------------------t-------------------------------------ctctctttcctctccctctctcctctctAATCCACTGGCTCCATCCCCTCTGTTCCCATTCGCACCCACCCACCACCCCCCTTGAAAGCCTCTGGAATCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5891876 237 +   6154872 CTCTACCTCCCCAAATCTCCCTCTTCCCCCTCAACCTCTCC-----TTGTCTGTCGGCTTCTCTCTCTTAGTACCAGCTACCAGATCCATGCAGctgtctttctgctcctcttctctcctctccctcattcctctctctc---------------------------t-------------------------------------ctctctttcctctctctctctcctctGTAATCCACTGGCTCCATCCCCTCTGTTCCCATTCGCACCCACCCACCACCCCCCTTGAAAGCCTCTGGAATCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30081454 270 + 172585720 CTCTACCTCCCCAAATCTCCCTCTCCCCACTCAACCTTTCC-----TTGTCTGTTGGCTTCTCTCTCTTAGTGCCAACTACCAGACCGATGCAGCTGTCCGTCTGCCCCTC-TCTCTCCTCTCCCCCATtctcttctctc---------------------------ttctctct-tctctctctctctctctctctctctctctctctctcctctctccctctctcCCCTGTAATCCACTGGCTCCATCCC--CTGTTCCCATTCGCACCCACCCACCACCCCCCTTGAGAGCCTCTGGAATCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29743996 271 - 170955103 CTCTACCTCCCCAAATCTCCCTCTCCCCACTCAACCTTTCC-----TTGTCTGTTGGCTTCTCTCTCTTAGTGCCAACTACCAGACCGATGCAGCTGTCCGTCTGCCCctc-tctctcctctcccccattctcttctctc---------------------------ttctctctctctctctctctctctctctctctctctctctctctctcctctccctctctcCCCTGTAATCCACTGGCTCCATCCC--CTGTTCCCATTCGCACCCACCCACCACCCCCCTTGAGAGCCTCTGGAATCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2792693 247 -   2996164 CTCTACCTCCCCAAATCTCCCTCTCCCCACTCAACCTTTCC-----TTGTCTGTTGGCTTCTCTCTCTTAGTGCCAACTACCAGACCGATGCAGCTGTCCGTCTGCCCctc-tctctcctctcccccattctcttctctc---------------------------t------------------------tctctctctctctctctctctcctctccctctctcCCCTATAATCCACTGGCTCCATCCC--CTGTTCCCATTTGCACCCACCCACCACCCCCCTTGAGAGCCTCTGGAATCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     543753 252 +    766320 CTCTACCTCCCCAAATCTCCCTCTCCCCACTCAACCTTTCC-----TTGTCTGTTGGCTTCTCTCTCTTAGTGCCAACTACCAGACCCATGCAGCTGTCCGTCTGCCCCTC-TCTCTCCTCTCCCCCATtctcttctctc---------------------------t-------------------ctctctctctctctctctctctttctcctctccctctctcCCCTGTAATCCACTAGCTCCATCCC--CTGTTCCCATTCGCACCCACCCACCACCCCCCTTGAGAGCCTCTGGAATCTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            28999852 250 -  71996105 CTCTACCTCCCCAAATCTCCCTCTCCCCACTCAACCTTTCC-----TTGTCTGTTGGCTTCTCTCTCTTAGTGCCAACTACCAGACCCATGCAGctgtctgtctgcccctc-tctctcctctcccccattctcttctctc---------------------------t---------------------ctctctctctctctttctctttctcctctccctctctcCCCTGTAATCCACTGGCTCCATCCC--CTGTTCCCATTCGCACCCACCCACCACCCCCCTTGAGAGCCTCTGGAATCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     176060 246 +    290775 CTCTACCTCCCCAAATCTCCCTCACCCCACTCAACCTTTCC-----TTGTCTGTTGGCTTCTCTCTCTTAGTGCCAACTACCAGACCCATGCAGCTGTCCGTCTGCCCCTC-TCTCTCCTCTCCCCCATtctcttctctc---------------------------t---------------------ctctctctctc----tctctttctcctctccctctctcCCCTGTAATCCACTAGCTCCATCCC--CTGTTCCCATTCGCACCCACCCACCACCCCCCTTGAGAGCCTCTGGAATCTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2634765 265 -   3067355 CTCTACCTCCCCAAATCTCCCTCTCCCCACTCAACCACTTCAACAGAAGTCTGTTGGCTTCTCTCTCTTAGTGCCAACTACCAGACCCATGCAGCTGTCCGTCTGCCCctc-tctctcctctcccccattctcctctctc---------------------------t-------------ctctctctctctctctttctctttctctttctcctctccttctctcCCCTGTAATCCACCAGCTCCATCCCCTCTGTTCCCATTCGCACTCACCCACCACCCCCCTTGAGAGCCTCTGGAATCTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30076732 244 + 171630274 CTCTACCTCCCCAAATCTCCCTCTCCCTGCTCAATATCTCC-----TTGTCTGTCGGCTTCTCTCTCTTAGTGCCAAGTACCAAACCCATGCAGCTTTCTGTCTGCCCctc-tctctcctctcccccattcccctctctc---------------------------t-----------------------------ttctctttctctccctcctttccctcactcCCCTGTAATCCCCTGGCTCCATCCCCTCTGTTCCCATTCACACCCACCCACTACCCCCCTTGAGAGCCTCTGGAATCTG
i calJac3.chr4             C 0 I 10
s saiBol1.JH378357           223352 240 -    242197 CTCTACCTCCCCAAATCTCCCTCTCCCCCGACAATATCTAC-----TTGTCTGTCAGCTTCTCTCTCTTAGTGCGAACTATCAGACCCATGCAGCTTTCTGTCTGCCCctc-tctctcctctccctcattccc----ctc---------------------------t-----------------------------ttctctttctctccctcctctccctcactcCCCTGTAATCCCCTGGCTCCATCCCCTCTGTTCCCATTCACACCCACCCACTACCCCCCTTGAGAGCCTCTGGAATCTG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     217085 244 -   1771730 TTCTACCTCCCCAAATCTCCCTCTCCCCCCTCAATATCTCC-----TTGTCTGTCGGCTTCTCTCTGTTAGTGCCAACTATCAGACTCATGCAGctttctgtctgcccctc-tctctcctctcccccattcccctctctc---------------------------t-----------------------------ttctctttctctcccacctctccctcgctcCCCTGTAATCCCCTGGCTCCATCCACTCTGTTCCCATTCACACCCACCCACTACCCCCCTTGAGAGCCTCTGGAATCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     299067 244 -    457564 CTCTACCTGCCCAAATCTCCCTCTCCTCCCTCAATATCTCC-----TTGTCTGTCGGCTTCTCTCCCTTAGTGCCAACTACCAGACACATGCAGctttctgtctgcccctc-tctctcctctcccccattcccctctctc---------------------------t-----------------------------ttctctttctctctctcctctccctcgctcCCCTGTAATCCCCTGGCTCCATCCCCTCTGTTCCCATTCACACCCACCCACTACCCCCCTTGAGAGCCTCTGGAATCTG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               102559 223 + 123392446 -TCTACT-CCCCAGATCTTCCTCT-CTCCTTCTACCTCTCC--------TCTGTTGGCA--TCTCTCTCAGTGTCAACCACCAGACCCAC-TAGGTGtctgtctgtccatc-tctcccct-----tgactccccttcctc---------------------------t-----------------------------ctctctctccctccctcatctcCGCTTCTG-CCCTGTACCCATTCGCTCCATCCC----GTTCCCATTCACACCCACCCACCG-CCC-CTTGAACACCTCCAGAATCTG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     596623 262 +    730504 -TCTACCACCACAGATCTCCCTCT-CCCCTTCAAACTCCCC------TGTCTGCTGGCATCTCTCTCTCAGTGTCAGCTACCAGACCCATGTAGATATCCGtctgtccctc-tctcccct-----tgactccccttcctctctctcctctctcttctccttccccctt-----------------------------ctctctttctctccctcctctcCATTTCTGCCCCCATACCCACTGGCTCCATCCCCTCTGTTCCCATTCACACCCACCCACCACCCC-CTTGAGCGCCTCTGGAATCTG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           110575 213 +  18854210 -TCCACCAATACAAATCTCTCTCTCCCCCTTCAACCTCTCC-----TTATCTGTTGCCATCTCTCACTCAGTGTCAACTACCAGCCCCCTGTA-------GTTTGTCCCTC-TCTCCCC-----------------CTTC---------------------------T-----------------------------CACTCCCTCTCTTCCTCCTTTCTGTCTCTGCCCCCATAGCCACTAGCTCCATCCCCTCTGTTCCCATT------CACCCACTACCCCACTTGAGTGCCTCTGGAATCTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57931906 192 -  94987271 CTCTGCCTCTGCAAACCTCCCTGTCC---TTCAAA-----------CTGTCTGTAAGCATCTCTCC----GGGTCAACTACCAAACCCACACACTTGTC-ATTTGTCTCTT----------------ATCCATCTGCCTG---------------------------C-------------------------------------CCCTTTACCCTCTTCTTTTCCACTCC---ATTCAGCAGCTCCATATT--TAGCTGCCAAT------CACCCTCTACCCC---TGAAGGCA-CTGGAATCCA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26229219 119 +  26524999 -----------------------------CTGAACCCCCAC------------------------------------------------------------TCTGCCTCGT-TGTC----------CACCCACCTCCCTC---------------------------C---------------------------------------CCCTCCCTTCTCCATCTCTTTTCT----------------ATTCCCACTGTTCCCACTCACA-----CTACCACCACCCCTGAGGGTCTCTGGAATGTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            40039 222 +    102524 CTGTACCTGCCCCCACCTCAGTGTCCACCACCACACCCACT-----CCATGTACCTGC--CCCCACCTCAGCGTTCACCACCTCACCTGCACACCTGT--ACCTGCCCCTC-CCTGGGCA-TCCACCACCACACCTGCAC---------------------------A-----------------------------CGGGCACTTGCCTGCTGCCCAGCCCCTGCCCTCCCTCTGCCACTGTGTCCATTTC---TGT--------------AGCCTCCACCCCTCTTGGGAGCCTCTGGGCCCCA
i dasNov3.JH582591         I 3177 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1764674.000000
s hg38.chr6_GL000254v2_alt   888357 165 +   4827813 CTGCCTTCCTGGATTCCTATCTCATCTTCGCTCCCATCTCTTGCCCCCACTTTGGATTGAACCTACTTTAACAGAACTGAGTCATTCT-GGGTCTATATGTCTGGGGAACAGGGCATCAAACAGG-GG-AAAaaaatcataaaatcataaagacagagaggatcccaa
s panTro5.chr6             29851123 165 + 175400573 CTGCCTTCCTGGATTCCTATCTCATCTTCGCTCCCATCTCTTGCCCCCACTTTGGATTGAACCTACTTTAACAGAACTGAGTCATTCT-GGGTCTATATGTCTGGGGAACAGGGCATCAAACAGG-GG-GAAaaaatcataaaatcataaagacagagaggatcccat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30085490 165 + 173848474 CTGCCTTCCTGGATTCCTATCTCATCTTCGCTCCCATCTCTTGCCCCCACTTTGGATTGAACCTACTTTAACAGAACTGAGTCATTCT-GGGTCTATATGTCTGGGGAACAGGGCATCAAACAGG-GG-GAAaaaatcataaaatcataaagacagagaggatcccat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5892113 165 +   6154872 CTGCCTTCCTGGATTCCTATCTCATCTTCGCTCCCATCTCTTGCCCCCACTTTGGATTGAACCTACTTTAACAGAACTGAGTCATTCT-GGGTCTATATGTCTGGGGAACAGGGCATCAAACAGG-GG-GAAaaaatcataagatcataaagacagagaggatcccaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30081724 164 + 172585720 CTGCCTTCCTGGATTCCTATCTCATCTTCCCTCCCATCTCTTGCCTCCACTTTGGATTGAACCTACTTTAACAGAACTGAGTCATTCG-GGGTCTGTCTGTC--GGGAACAGGGCATTAAACAGG-GGAAAAAAAATCATAAAATCATAAAGACAAAGAGGATCCCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29744267 164 - 170955103 CTGCCTTCCTGGATTCCTATCTCATCTTCCCTCCCATCTCTTGCCTCCACTTTGGATTGAACCTACTTTAACAGAACTGAGTCATTCG-GGGTCTGTCTGTC--GGGAACAGGGCATTAAACAGG-GGAAAAAAAATCATAAAATCATAAAGACAAAGAGGATCCCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2792940 164 -   2996164 CTGCCTTCCTGGATTCCTATCTCATCTTCCCTCCCATCTCTTGCCTCCACTTTGGATTGAACCTACTTTAACAGAACTGAGTCATTCG-GGGTCTGTCTGTC--GGGAACAGGGCATTAAACAGG-GGAAAAAAAATCATAAAATCATAAAGACAAAGAGGATCCCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     544005 163 +    766320 CTGCCTTCCTGGATTCCTATCTCATCTTCCCTCCCATCTCTTGCCTCCACTTTGGATTGAACCTACTTTAACAGAACTGAGTCATTCG-GGGTCTGTCTGTC--GGGAACAGGGCATTAAACAGA-GG-AAAAAAATCATAAAATCATAAAGACAAAGAGGATCCCAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29000102 163 -  71996105 CTGCCTTCCTGGATTCCTATCTCATCTTCCCTCCCATCTCTTGCCTCCACTTTGGATTGAACCTAATTTAACAGAATTGAGTCACTCG-GGGTCTGTCTGTC--GGGAACAGGGCATTAAACAGG-GG-GAAAAAATCGTAAAATCATAAAGACAAAGAGGATTCCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     176306 163 +    290775 CTGCCTTCCTGGATTCCTATCTCATCTTCCCTCCCATCTCTTGCCTCCACTTTGGATTGAACCTACTTTAACAGAACTGAGTCATTCG-GGGTCTGTCTGTC--GGGAACAGGGCATTAAACAGG-GG-AAAAAAATCATAAAATCATAAAGACAAAGAGGATCCCAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2635030 161 -   3067355 CTGCCTTCCTGGATTCCTATCTCATCTTCCCTCCCATCTCTTGCCTCCACTTTGGATTGAACCTACTTTAGCAGAACTGAGTCATTCT-GGGTCTGTCTGTC--GGGAACACGGCATTAAACAGG-GG-AAAAAAATCATAAAATCATAAAGAC--AGAGGATTCCAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           223592 164 -    242197 CTGCCTTCCTGGATTCCTATCTCACGTTCCCTCCCTTCTCTTGCCTCTACTTTGGATTGAACCTACTTTAACAGAACTGAGTCATTCT-GGGTCTGTCCGTCTGGGGAACTGAGCATCAAACAGG-GGAGAAAATATCATAAGATCGAAAAGAC--AGAGGATCCCAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     217329 164 -   1771730 CTGCCTTCCTGGATTCCTATCTCATGTTCCCTCCCTTCTCTTGCCTCTACTTTGGATTGAACCTACTTTAACAGAACTGAGTCATTCT-GGGTCTGTCTGTCTGGGGAACAGAGCATCAAACAGG-GGAGAAAATATCATAAAATCAAAAAGAC--AGAGGATCCCAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     299311 159 -    457564 CTGCCTT-CTCGATTCCTATCTCATGTTCCCTCGCTTCTCTTGCCTCTACTTTGGATTGAACCTACTTTAACAGAACTGAGTCATTCT-GGGTCT----GTCTGGGGAACAGAGCATCAAACAGG-GGAGAAAATATCATAAAATCGAAAAGAC--AGAGGATCCCAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               102782 164 + 123392446 CTGCCTTCCTGGATTCCTATCTAATA-TCCCTCCCTTCTCTCCCCTCAACTTTGGCTTGAACCTGCTTTAATAGAACTGAGTCATTTG-GGGCCTGTCTGTCTGGGGAACAGAGCATCAAAAGGA-GA-AAAATAATCACAAAATCAAAAAGATGGGGAGGATCCCAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     596885 165 +    730504 CTGCCTTCCTGGATTCCTATCTCATA-TCCCTCCCTTCTCTTCCCTCAACTTTGGCTTGAACCTGCTTTAACAGAACTGAGTCATTTG-GGGCCTATCGGTCTGGGGAACACAGCATCAAAAGGAGGG-AAAAAAATCACAAAATCAAAAAGATGGAGAAGATCCCAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           110788 138 +  18854210 CTGCCTTCCTGGATTTCTATCTCATATTCCCTCTCTTCTGT---ATCAACTTCAGATTGAACCTACTTTACCAGAACTGAGTCATTTGAGGGTTTATCCATCTAGAGAACAGAGAATCAAAAGGA-------AAGATCGCAAA--------------------CTCAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57932098 120 -  94987271 CTACTTCCCTAAGACCCTACTTCTTAGCCCCTC-------TTGTTTCAACTTGGAATTAAACCTACTTTCATAGAACAGAGTC----------CTATCTGTCTGGGGAAC-------------------------------AAATCGAAATGGCAGAGAGGATTACAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26229338 163 +  26524999 CCGCCTCTCTGGGTTCCTATCACATATTCCTTCTTGCATCTCATCTCAACCCTGGGGAAAAGCTACTATAATAGAATTGGGTCAGTTG-GGGTCTAATTATCTGGCAAAGAGAGCATCAAAGGGA----AAAAGTGCCCTAAAACCAAACAGTTGGAAAGGACCCTAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            40261 154 +    102524 CGACCTTCCTGGGCTCCTCTCCGATG--CCTGCTCTTGCCTTGCCTCAACTTTGAAGTGAACCTCCCTTAAGAGAGCTGAGCCGTTGT-GGAGCCATCA-----GAGCAGAAGACTTCCAAAGGG------AAGCATCCTACAACCACCATGTCGGAGGAGGTGGTGG
i dasNov3.JH582591         C 0 C 0
e calJac3.chr4             30076976  10 + 171630274 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1166428.000000
s hg38.chr6_GL000254v2_alt   888522  95 +   4827813 aaactcaactc-attctttcccctggctacagaaagaac----------------tgcacttaatccacatggaatgcgttctctttCAATGAAGAATCAAGTTCTTGCCCC
s panTro5.chr6             29851288  95 + 175400573 aaactcaactc-attctttcccctggctacagaaagaac----------------tgcacttaatccacatggaatgcattctcttttaatgaagaatcAAGTTCTTGCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30085655  95 + 173848474 aaactcaactc-attctttcccctggctacagaaagaac----------------tgcacttaatccacatggaatgcattctcttttaatgaagaatcAAGTTCTTGCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5892278  95 +   6154872 aaactcaactc-attctttcccctggctacagaaagaac----------------tgcacttaatccacatggaatgcgttctcttttaatgaagaatcAAGTTCTTGCCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30081888  96 + 172585720 AAACTCAACTC-ATTCTTTCCCCTGGCTACAGAAAGAACA---------------TGCACTTAATCCACATGAAATGCATTCTCTTTTAATGAAGAATCAAGCTCTCGCCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29744431  96 - 170955103 AAACTCAACTT-ATTCTTTCCCCTGGCTACAGAAAGAACA---------------TGCACTTAATCCACATGAAATGCATTCTCTTTTAATGAAGAATCAAGCTCTCGCCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2793104  96 -   2996164 AAACTCAACTC-ATTCTTTCCCCTGGCTACAGAAAGAACA---------------TGCACTTAATCCACATGAAATGCATTCTCTTTTAATGAAGAATCAAGCTCTCGCCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     544168  96 +    766320 AAACTCAACTC-ATTCTTTCCCCTGGCTACAGAAAGAACA---------------TGCACTTAATCCACATGAAATGCATTCTCTTTTAATGAAGAATCAAGCTCTCGCCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29000265  96 -  71996105 AAACTCAACTC-ATTCTTTCCTCTGGCTACAGAAAGAACA---------------TGCACTTAATCCACATGAAATGCGTTCTCTTTTAATGAAGAATCAAGCTCTCGCCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     176469  96 +    290775 AAACTCAACTC-ATTCTTTCCCCTGGCTACAGAAAGAACA---------------TGCACTTAATCCACATGAAATGCATTCTCTTTTAATGAAGAATCAAGCTCTCGCCTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2635191  96 -   3067355 AAACTCAACTC-ATTCTTTCCCCTGGCTACAGAAAGAACA---------------TGCACTTAATCCACAAGAAATGTGTTCTCTTTTAATGAAGAATCAAGCTCTCGCCTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30076986  94 + 171630274 AAACTCAACTC-ATTCCTTCCCCTGGCTACACAAAGAACA---------------TGTACTTAACTCACGTGGAATGCAT--TCTTTTCATGAAGAATCAAGCTCTTGCCTC
i calJac3.chr4             I 10 C 0
s saiBol1.JH378357           223756 109 -    242197 AAACTCAACTC-ATTCCTTCCCCTGGCTACACAAAACTCAACTCATTCCTTCCCCTGTACTTAACCCACGTGGAATGCAT--TCTTTTAATGAAGAATCAAGCTCTTGCCCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     217493  94 -   1771730 AAACTCAACTC-ATTCCTTCCCCTGGCTACACAAAGAACA---------------TGTACTTAACCCACGTGAAATGCAT--TCTTTTAACGAAGAATCAAGCTCTTGCCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     299470  94 -    457564 AAACTCAACTC-ATTCCTTCCCCTGGCTACACAAAGAACA---------------TGTACTTAACCCACATGGAATGCAT--TATTTTAATGAAGAATCAAGCTCTTTCCCC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               102946  96 + 123392446 AAATTCACCTC-GTTCGTCCCCCTGGCTGCAGAAAGAACA---------------CATACTTAGTCCCCTTGGAATGTGTTCTCCTTTGATAAAGAACCAAGATCTTCCCCC
i micMur3.chr6             C 0 I 42
s proCoq1.NW_012152574v1     597050  96 +    730504 AAACTCACCTC-GTTCATCCCCCTGGCTGCAGAAAGAACA---------------TACACTTAGCCCCCTTGGAATGTGTTCTCCTTTGATAAAGAACCAAGATCTTCCCCC
i proCoq1.NW_012152574v1   C 0 I 38
s otoGar3.GL873550           110926  96 +  18854210 AAACTCAACTC-ATTCATTCTCCTGGCTACAGAAAGAACA---------------TGCATTTATCCTCCTTGGAATGTATTCTCTTTTGATAAAGAACCAAGATCCTCCCCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57932218  95 -  94987271 AAATCCAATTC-GTGTGTTCCCCAGGCTACAGAAAGAACA---------------AGCACTTCGCCCACTTGGAATGTGTTCTCTTCTGATAAACCATCACGTCCTCCCCG-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26229501  96 +  26524999 AAACCCGGATCTGTTTGTTCCTCTGGTTGCAAAAAGA-CA---------------CCCACTGAACCCACTCAGAACGGGTTTGCTTTTGATAAAGAAGCAGGCTCTTCTCCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            40415  49 +    102524 AAAG--AGCGT-GCTGGGTCCTCTGGCCGCGGGTGGGAAC---------------TG------ACCCACCAGG---------------------------------------
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=399131.000000
s hg38.chr6_GL000254v2_alt   888617 51 +   4827813 TAAAAGTGACTCTCACGTCACATCTCCTGGTGCTGGAATTTGAGCTTATGT
s panTro5.chr6             29851383 51 + 175400573 TAAAAGTGACTCTCACGTCACATCTCCTGGCGCTGGAATTTGAGCTTATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30085750 51 + 173848474 TAAAAGTGACTCTCACGTCACATCTCCTGGCACTGGAATTTGAGCTTATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5892373 51 +   6154872 TAAAAGTGACTCTCACGTCACATCTCCTGGCGCTGGAATTTGAGCTTACGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30081984 51 + 172585720 TAAAAGTGAATCTCGCATCACATCTCCCTGGGTTGGAATTTGAGCTTATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29744527 51 - 170955103 TAAAAGTGAATCTCGCATCACATCTCCCTGGGTTGGAATGTGAGCTTATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2793200 51 -   2996164 TAAAAGTGAATCTCGCATCACATCTCCCTGGGTTGGAATGTGAGCTTATGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     544264 51 +    766320 TAAAAGTGAATCTGGCATCACATCTCCCTGTGCTGGAATGTGAGCTTATGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29000361 51 -  71996105 TAAAAGTGAATCTCGCATCACATCTCCCTGTGCTGGAATGTGAGCTTATGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     176565 51 +    290775 TAAAAGTGAATCTGGCATCACATCTCCCTGTGCTGGAATGTGAGCTTATGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2635287 51 -   3067355 TAAAAGTGAATCTCGCATCACATCTCCCTGTGCTGGAATTAGAGCTTATGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30077080 51 + 171630274 TAAAAGTGCATCTCTCGTCACATCTCCCTAAGCTGGAATTTGAGCCTATGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           223865 51 -    242197 TAAAAGTGAATCTCTCGTCGCATTTCCCTACACTGGAATTTGAGCTTATGT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     217587 51 -   1771730 TAAAAGTGAATCTCACGTCACAACTCTCTCTGCTAGAATTTGAGCTTATGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     299564 51 -    457564 TAAAAGTGAATCTCACGTCACAACTCCCTAAGCTGGAATTTGAGCTTATGT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           111022 49 +  18854210 -CAAAATGAATC-CAAGTCATAGCTCTGTCCACAGGAGTTTAAGCAGATGC
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57932313 29 -  94987271 CAAGAG------------CAGATGCCCCTGG----------GACCTCACGC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26229597 41 +  26524999 CAGAAGGCATCCTGGC--CACGGCACCATGCCCTGGAGTGGGA--------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               103042 42 + 123392446 I
e dasNov3.JH582591            40464  0 +    102524 C
e proCoq1.NW_012152574v1     597146 38 +    730504 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=64640.000000
s hg38.chr6_GL000254v2_alt   888668 6 +   4827813 CCCTTT
s panTro5.chr6             29851434 6 + 175400573 CCCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30085801 6 + 173848474 CCCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5892424 6 +   6154872 CCCTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30082035 6 + 172585720 CCCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29744578 6 - 170955103 CCCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2793251 6 -   2996164 CCCTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     544315 6 +    766320 CCCTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29000412 6 -  71996105 CCCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     176616 6 +    290775 CCCTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2635338 6 -   3067355 CCCTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30077131 6 + 171630274 CCCTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           223916 6 -    242197 CCCTTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     217638 6 -   1771730 CCCTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     299615 6 -    457564 CCCTTT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     597184 6 +    730504 CCCGCT
i proCoq1.NW_012152574v1   I 38 C 0
s otoGar3.GL873550           111072 6 +  18854210 CCCACT
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57932342 3 -  94987271 CCC---
i mm10.chr17               C 0 C 0
e micMur3.chr6               103042 42 + 123392446 I
e dasNov3.JH582591            40464 0 +    102524 C
e canFam3.chr35            26229638 0 +  26524999 C
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=3741669.000000
s hg38.chr6_GL000254v2_alt   888674 229 +   4827813 ACCCCTTGCCCAACCCCTCCTCACCGAAGTGAAGACCTCAGTGGTCTGCTGGATGGTAGCAATCTTCTTCCAGCCCCACTTTTCAAAGAGTTTCACGCGGGTAGGGTTGTGGAGTGTGGCTGATGGGTGCGTTCGGAAGAAAGTGGGGAAACGCTGCCGGTTTGACAGGGCTGGTGAGCTGGAGCCATAGGAAAGCT-GTGGG--------------------------------------------------GCAGGGAGAGTGAGTGCAACAGGGTCT
s panTro5.chr6             29851440 229 + 175400573 ACCCCTTGCCCAACCCCTCCTCACCGAAGTGAAGACCTCAGTGGTCTGCTGGATGGTAGCAATCTTCTTCCAGCCCCACTTTTCAAAGAGTTTCACGCGGGTAGGGTTGTGGAGTGTGGCTGATGGGTGCGTTCGGAAGAAAGTGGGGAAACGCTGCCGGTTTGACAGGGCTGGTGAGCTGGAGCCATAGGAAAGCT-GTGGG--------------------------------------------------GCAGGGAGAGTGAGTGCAACAGGGTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30085807 229 + 173848474 ACCCCTTGCCCAACCCCTCCTCACCGAAGTGAAGACCTCAGTGGTCTGCTGGATGGTAGCAATCTTCTTCCAGCCCCACTTTTCAAAGAGTTTCACGCGGGTAGGGTTGTGAAGTGTGGCTGATGGGTGCGTTCGGAAGAAAGTGGGGAAACGCTGCCGGTTTGACAGGGCTGGTGAGCTGGAGCCATAGGAAAGCT-GTGGG--------------------------------------------------GCAGGGAGAGTGAGTGCAACAGGGTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5892430 229 +   6154872 ACCCCTTGCCCAACCCCTCCTCACCGAAGTGAAGACCTCAGTGGTCTGCTGGATGGTAGCAATCTTCTTCCAGCCCCACTTTTCAAAGAGTTTCACGCGGGTAGGGTTGTGGAGTGTGGCTGATGGGTGCGTTCGGAAGAAAGTGGGGAAACGCTGCCGGTTTGACAGGGCTGGTGAGCTGGAGCCATAGGAAAGCT-GTGGG--------------------------------------------------GCAGGGAGAGTGAGTGCAACAGGGTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30082041 229 + 172585720 AGCCCTTGCCCAACCCCTCCTCACCGAAGTGAAGACCTCAGTGGTCTGCTGGATGGTAGCAATCTTCTTCCAGCCCCACTTTTCAAAGAGTTTCACGCGGGTAGGGTTGTGGAGTGTGGCTGATGGGTGCGTTCGGAAGAAAGTGGGGAAACGCTGCCGGTTTGACAGGGCTGGTGAGCTGGAGCCATAGGAAAGCT-GTGGG--------------------------------------------------GCAGGGAGAGTGAGTGCAACAGGGTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29744584 229 - 170955103 AGCCCTTGCCCAACCCCTCCTCACCGAAGTGAAGACCTCAGTGGTCTGCTGGATGGTAGCAATCTTCTTCCAGCCCCACTTTTCAAAGAGTTTCACGCGGGTAGGGTTGTGGAGTGTGGCTGATGGGTGCGTTCGGAAGAAAGTGGGGAAACGCTGCCGGTTTGACAGGGCTGGTGAGCTGGAGCCATAGGAAAGCT-GTGGG--------------------------------------------------GCAGGGAGAGTGAGTGCAACAGGGTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2793257 229 -   2996164 AGCCCTTGCCCAACCCCTCCTCACCGAAGTGAAGACCTCAGTGGTCTGCTGGATGGTAGCAATCTTCTTCCAGCCCCACTTTTCAAAGAGTTTCACGCGGGTAGGGTTGTGGAGTGTGGCTGATGGGTGCGTTCGGAAGAAAGTGGGGAAACGCTGCCGGTTTGACAGGGCTGGTGAGCTGGAGCCATAGGAAAGCT-GTGGG--------------------------------------------------GCAGGGAGAGTGAGTGCAACAGGGTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     544321 229 +    766320 AGCCCTTGCCCAACCCCTCCTCACCGAAGTGAAGACCTCAGTGGTCTGCTGGATGGTAGCAATCTTCTTCCAGCCCCACTTTTCAAAGAGTTTCACGCGGGTAGGGTTGTGGAGTGTGGCTGATGGGTGCGTTCGGAAGAAAGTGGGGAAACGCTGCCGGTTTGACAGGGCTGGTGAGCTGGAGCCATAGGAAAGCT-GTGGG--------------------------------------------------GCAGGGAGAGTGAGTGCAACAGGGTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29000418 229 -  71996105 AGCCCTTGCCCAACCCCTCCTCACCGAAGTGAAGACCTCAGTGGTCTGCTGGATGGTAGCAATCTTCTTCCAGCCCCACTTTTCAAAGAGTTTCACGCGGGTAGGGTTGTGGAGTGTGGCTGACGGGTGCGTTCGGAAGAAAGTGGGGAAACGCTGCCGGTTTGACAGGGCTGGTGAGCTGGAGCCATAGGAAAGCT-GTGGG--------------------------------------------------GCAGGGAGAGTGAGTGCAACAGGGTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     176622 229 +    290775 AGCCCTTGCCCAACCCCTCCTCACCGAAGTGAAGACCTCAGTGGTCTGCTGGATGGTAGCAATCTTCTTCCAGCCCCACTTTTCAAAGAGTTTCACGCGGGTAGGGTTGTGGAGTGTGGCTGATGGGTGCGTTCGGAAGAAAGTGGGGAAACGCTGCCGGTTTGACAGGGCTGGTGAGCTGGAGCCATAGGAAAGCT-GTGGG--------------------------------------------------GCAGGGAGAGTGAGTGCAACAGGGTCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2635344 229 -   3067355 ACCCCTTGCCCAACCCCTCCTCACCGAAGTGAAGACCTCAGTGGTCTGCTGGATGGTAGCAATCTTCTTCCAGCCCCACTTTTCAAAGAGTTTCACGCGGGTAGGGTTGTGGAGTGTGGCTGATGGGTGCGTTCGGAAGAAAGTGGGGAAACGCTGCCGATTTGACAGGGCTGGTGAGCTGGAGCCATAGGAAAGCT-GTGGG--------------------------------------------------GCAGGGAGAGTGAGTGCAACAGGGTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30077137 225 + 171630274 ACCCCTTGCCCAACCCCTCCTCACCGAAGTGAAGACCTCAGTAGTTTGCTGGATGGTAGCAATCTTCTTCCAGCCCCACTTTTCAAAGAGTTTCACGCGGGTGGGGTTGTGGAGTGTGGCTGATGGATGCGTTCGGAAGAAAGTGGGAAAACGCTGCCGGTTTGACAAGGCTGGTGAGCTGGAGCCATAGGAAAGCT-GTGGG--------------------------------------------------GCAGGGAGAG----TACAACAGGGTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           223922 225 -    242197 ACCCCTTGCCCAACCCCTCCTCACCGAAGTGAAGACCTCAGTGGTCTGCTGGATGGTGGCAATCTTCTTCCAGCCCCACTTTTCAAAGAGTTTCACACGGGTGGGGTTGTGGAGTGTGGCTGATGGATGCGTTCTGAAGAAAGTGGGGAAACGCTGCCGGTTTGACAGGGCTGGTGAGCTGGAGCCATAGGAAAGCT-GCGGG--------------------------------------------------GCAGGAAGAG----TGCAATAGGGTCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     217644 219 -   1771730 ACCCCTTGCCCAACTCCTCCTCACCGAAGTGAAGACCTCAGTGGTCTGCTGGATGGTAGCAATCTTCTTCCAGCCCCACTTTTCAAAGAGTTTCACCCGGGTGGGGTTGTGGAGTGTGGCTGATGGATGCGTTCGGAAGAAAGTGGGGAAACGCTGCCGGTTTGACAGGGCTGGTGAGCTGGAGCCATAGGAAAGCT-GCGGG--------------------------------------------------GCAGGGAGAG----------AGGGTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     299621 225 -    457564 ACCCCTTGCCCAACCCCTCCTCACCGAAGTGAAGACCTCAGTGGTCTGCTGGATTGTAGCAATCTTCTTCCAGCCCCACTTTTCAAAGAGTTTCACGCGGGTGGGGTTGTGGAGTGTGGCTGATGGATGCGTTCGGAAGAAAGTGGGGAAACGCTGCCGGTTTGACAGGGCTGGTGAGCTGGAGCCATAGGAAAGCT-GCGGG--------------------------------------------------GCAGGGAGAG----TCCAACAGGGTCT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               103084 226 + 123392446 GCCCGCTGCCCAGTCCCTCCTCACCGAAGTGAAGACCTCAGTGGTCTGCTGGATGGTGGCGATCTTCTTCCAGCCCCACTTTTCAAAAAGCTTCACACGGGTAGGGTTGTGCAGCGTGGCCGATGGGTGCGTTCGGAAGAATGTGGGAAAACGCTGCCGGTTTGACAGGGCTGGTGAGCTCGAGCCGTACGAAAGCT-AGGAGG-------------------------------------------------GCAGGCAGAG----TGCAACAGGGTCT
i micMur3.chr6             I 42 I 19
s proCoq1.NW_012152574v1     597190 226 +    730504 GCCCTTTGCCCAGTCTCTCCTCACCGAAGTGAAGACCTCAGTTGTCTGCTGGATGGTGGCAATCTTCTTCCAGCCCCACTTTTCAAAGAGCTTCACACGGGTAGGGTTGTGCAGTGTGGCTGATGGATGCGTTCGGAAGAATGTGGGAAAACGCTGCCGGTTTGACAGGGCTGGTGAGCTCGAGCCGTAGGAAAGCT-AGGAGG-------------------------------------------------GCAGGGAGAG----TGCTACAGGGTCT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           111078 227 +  18854210 GCCCTTTGCCCAGTCCCTCCTTACCGAAGTGAAGACTTCAGTGGTCTGCTGGATGGTGGCAATCTTCTTCCAGCCCCACTTTTCAAAGAGTTTCACACGGGTAGGGTTATGGAGTGTGGCTGATGGATGTGTTCGGAAGAATGTGGGAAAACGCTGCCGGTTTGACAGTGCTGGTGAGCTCGAGCCATAGGAAAGCT-AGGAGG------------------------------------------------AGCAGGGACAG----CACAACAGGATCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57932345 216 -  94987271 ACCCCTTGTCTGG-----ACTCACTGAGGTGAAGACCTCGGTAGTCTGCTGGATGGTGGCAATCTTCTTCCAGCCCCACTTTTCGAAGAGTTTCACCCGGGTGGGATTGTGGAGTGTGGCGGATGGATGTGTCCGAAAGAACGTTGGAAACCGCTGTCGGTTTGACAAGGCTGGTGAGCTGGAGCCATATGAGAGCT-GAGGC--------------------------------------------------AGAAGAAGGG--------GAAGTGTCC
i mm10.chr17               C 0 I 2
s canFam3.chr35            26229638 214 +  26524999 --------CACAGGCCC-CCTTACCGATGTGAACACCTCGGTGGTCTGCTGGATGGTGGCAATCTTCCTCCAGCCCCACTTCTCAAAGAGCTTCACTCGCGTAGGGTTGTGGAGCGTGGCCGAGGGATGAGTTCGGAAGAAGGTAGGAAAGCGCTGCCGGTTGGACAGAGCTGGTGAGCTGGAACCATAGGAGAGCTAGCGGG--------------------------------------------------ACAAAGGCAG----TACAGAACAG---
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            40464 258 +    102524 ---CCCCTCCCCGCAGTTCCTCACCGAAGTGAAGACCTCGGTGGTCTGCTGGATGGTGGCGATCCTCTTCCAGCCCCACTTCTCGAAGAGCTTCACGCGGGTGGGGTTGTGCAGCGTGGCGGACGGGTGCGTCCGGAAGAAGGTGGGGAAGCGCTGCCGGTTGGACAGGGCCGGCGAGCTGGAGCCGTAGGAGAGCT-GGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGGGAGG------------------
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=180594.000000
s hg38.chr6_GL000254v2_alt   888903 17 +   4827813 GTTCACTGAGGACACCA
s panTro5.chr6             29851669 17 + 175400573 GTTCACTGAGGACACCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30086036 17 + 173848474 GTTCACTGAGGACACCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5892659 17 +   6154872 GTTCACTGAGGACACCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30082270 17 + 172585720 GTTGACTGAGGACACCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29744813 17 - 170955103 GTTGACTGAGGACACCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2793486 17 -   2996164 GTTGACTGAGGACACCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     544550 17 +    766320 GTTGACTGAGGACACCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29000647 17 -  71996105 GTTGACTGAGGACACCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     176851 17 +    290775 GTTGACTGAGGACACCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2635573 17 -   3067355 GTTCACTGAGGACACCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30077362 17 + 171630274 GTTCACTGAGGACACCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           224147 17 -    242197 GTTCACTGAGGACACCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     217863 17 -   1771730 GTTCACTGAGGACACCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     299846 17 -    457564 GCTCACTGAGGACACCA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     597416 17 +    730504 GCTCATCCTGGACTCCA
i proCoq1.NW_012152574v1   C 0 I 3
s otoGar3.GL873550           111305 17 +  18854210 GTTCATCACGGACTCCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57932563 17 -  94987271 GCAAACTGAGCATGCTA
i mm10.chr17               I 2 C 0
s canFam3.chr35            26229852 13 +  26524999 GCTCACCTGGAGC----
i canFam3.chr35            C 0 C 0
e micMur3.chr6               103310 19 + 123392446 I
e dasNov3.JH582591            40722  0 +    102524 C
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1230796.000000
s hg38.chr6_GL000254v2_alt   888920 110 +   4827813 AGAGTGGCCAAGAGTTCCTTTAACCCTCTTCCTGCCTTTGGGTTTCTCTTCCTTACTCTCTCCAAACCTCCCCACCTCTGGTCTGCCTAAGGAAAAGAGATTCTCAAAGG
s panTro5.chr6             29851686 110 + 175400573 AGAGTGGCCAAGAGTTCCTTTAACCCTCTTCCTGCCTTCGGGTTTCTCTTCCTTACTCTCTCCAAACCTCCCCACCTCTGGTCTGTCTAAGGAAAAGAGATTCTCAAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30086053 110 + 173848474 AGAGTGGCCAAGAGTTCCTTTAACCCTCTTCCTGCCTTCGGGTTTCTCTTCCTTACTCTCTCCAAACCTCCCCACCTCTGGTCTGCCTAAGGAAAAGAGATTCTCAAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5892676 110 +   6154872 AGAGTGGCCAAGAGTTCCTTTAACCCTCTTCCTGCCTTTGGGTTTCTCTTCCTTACTCTCTCCAAACCTCCCCACCTCTGGTCTGCCTAAGGAAAAGAGATTCTCACAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30082287 110 + 172585720 AGAGTGGCTAAGAGTTCCTTTAACCCTCTTCCTGTCTTTCAGTTTCTCTACCTTACTCTCTCCAAACCTCCCCACCTCTGGTCTGCCTAAGGAAAAGTGATTCTCAAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29744830 110 - 170955103 AGAGTGGCTAAGAGTTCCTTTAACCCTCTTCCTGTCTTTCAGTTTCTCTACCTTACTCTCTCCAAACCTCCCCACCTCTGGTCTGCCTAAGGAAAAGTGATTCTCAAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2793503 110 -   2996164 AGAGTGGCTAAGAGTTCCTTTAACCCTCTTCCTGTCTTTCAGTTTCTCTACCTTACTCTCTCCAAACCTCCCCACCTCTGGTCTGCCTCAGGAAAAGTGATTCTCAAAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     544567 110 +    766320 AGAGTGGCTAAGAGTTCCTTTAACCCTCTTCCTGTCTTTTAGTTTCTCTACCTTACTCTCTCCAAACCTCCCCACCTCTGGTCTGCCTAAGGAAAAGTGATTCTCAAAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29000664 110 -  71996105 AGAGTGGCTAAGAGTTTCATTAACCCTCTTTCTGTCTTTCAGTTTCTCTACCTTACTCTCTCCAAACCTCCCCACCTCTGGTCTGCCTAAGGAAAAGTGATTCTCAAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     176868 110 +    290775 AGAGTGGCTAAGAGTTCCTTTAACCCTCTTCCTGTCTTTCAGTTTCTCTACCTTACTCTCTCCAAACCTCCCCACCTCTGGTCTGCCTAAGGAAAAGTGATTCTCAAAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2635590 110 -   3067355 AGAGTGGCTAAGAGTTCCTTTAACCCTCTTCCTATCTTTCAGTTTCTCTACCTTACGCTCTCCAAACCTCCCCACCTCTGGTCTGCCTAAGGAAAAGTGATTCTCAAAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30077379 110 + 171630274 AGACTGGCTAAGAATTCCTTTAACCCTCTTCCTGCCTTTGGGTTTCTCTACCTTACTCTCTCCAATCCTCCCCACCTCTGGTCTGCCTAAGGAAAAGTGATTCTCAAAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           224164 110 -    242197 AGAGTGGCTAAGAATTCCTTTAACTCTCTTCCTGCCTTTGGGTTTCTCTACCTTACTCTCTCCAATCCTCCCCACTTCTGGTCTGCCTAAGGAAAAGTGATTCTCAAAGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     217880 110 -   1771730 AGAGTGGCTAAGAGTTCCTTTAACCCTCTTCCTGCCTTTGGATTTCTCTACCTTACTCTCTCCAATCCTCCCCACCTCTGGTCTGCCTAAGGAAAAGTGATTCTCAAAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     299863 110 -    457564 AGAGTGGCTAAGAGTTCCTTTAATCCTCTTCCTGCCTTTGGGTTTCTCTACCTTACTCTCTTCAATCCTCCCCACCTCTGATCTGCCTAAGGAAAAGTGATTCTCAAAGG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               103329 110 + 123392446 AGAGTGGCTAAGAGTTGCTTAAACCCTCTCCCCACCTCTGGGTCCCTCTCTGCTACTCCCTCCAAATGTCCCCACCTCTGGTCTGCTCCAGAAAAAGTGACTCTCAGAGG
i micMur3.chr6             I 19 C 0
s proCoq1.NW_012152574v1     597436 110 +    730504 AGAGTGCCTAAGAGTTCCTTTAACCCTCTCCCTGCCTCTGGGTTTCTCTCTGCTACTCCCTCCAAACTTCCCCACCTCTGGTCTGCTCCAGAAAAAGTGATTCTCAAAGG
i proCoq1.NW_012152574v1   I 3 C 0
s otoGar3.GL873550           111322  95 +  18854210 -------CTGA----TTCTTTATCCCTCTCCATGCCTCTAGGTT----TTGGCTACTCCTCCATATTTCCCCTATCTTTCATCTGCCCCAGGTAAAGTGATTCTCAAAGG
i otoGar3.GL873550         C 0 I 275
s mm10.chr17               57932580  90 -  94987271 ----------GCAGTGTCCTTACTGCTTTCTTGGCCCT--GACTTTTCTCCCAGA---TCTCTAAACTTCCCCATCTTTGTCCTG-----GGAAAAGTGATTTacacaca
i mm10.chr17               C 0 I 4
s canFam3.chr35            26229865  63 +  26524999 ----------------TTGTGCACCATCCCCCAG--------------------GCTGCCTCCCGGCCCCCCACCCACT--TCTGCCTCAAGCATCATGGC---------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            40722  21 +    102524 -----------------------------------------------------------CACCCACCCTCCGCCCCCCTG------------------------------
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=267481.000000
s hg38.chr6_GL000254v2_alt   889030 20 +   4827813 CCCACACAC---------CCCTCACAACC
s panTro5.chr6             29851796 20 + 175400573 CCCACACAC---------CCCTCACAACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30086163 20 + 173848474 CCCACACAC---------CCCTCACAACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5892786 20 +   6154872 CCCACACAC---------CCCTCACAACC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30082397 20 + 172585720 CCCACGCAC---------CCCTCATAATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29744940 20 - 170955103 CCCACGCAC---------CCCTCATAATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2793613 20 -   2996164 CCCACGCAC---------CCCTCATAATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     544677 20 +    766320 CCCACGCAC---------CCCTCATAATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29000774 20 -  71996105 CCCACGCAC---------CCCTCATAATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     176978 20 +    290775 CCCACGCAC---------CCCTCATAATC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2635700 20 -   3067355 CCCACGCAC---------CCCTCACAATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30077489 20 + 171630274 CCCACGCAC---------CCCTCACAATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           224274 20 -    242197 CCCACGCAC---------CCCTCACAATC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     217990 20 -   1771730 CCCACGCAC---------CCCTCACAATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     299973 20 -    457564 CCCACGCAC---------CCCTCACAATC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               103439 20 + 123392446 CCCACATGC---------TCCTTACAGTC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     597546 20 +    730504 CCCACACGC---------TCCTTACAATC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           111692 20 +  18854210 CCCACACAC---------TCCTCGCAATC
i otoGar3.GL873550         I 275 C 0
s mm10.chr17               57932674 29 -  94987271 cacacacacaTCTGTGGATCCTCACAGCC
i mm10.chr17               I 4 I 186
s canFam3.chr35            26229928 20 +  26524999 CCTGCACCC---------CCACCTCACCC
i canFam3.chr35            C 0 I 5
e dasNov3.JH582591            40743  0 +    102524 C
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1180161.000000
s hg38.chr6_GL000254v2_alt   889050 96 +   4827813 G-GGATGCTCTTTCACTGATCTAATTTCAATTCCTTCTGA-AGAAGGAGGTCAGCTGCAGCACTGTCAGGCCACTGTTGCTAGGAGGCTGCCTAGCTC
s panTro5.chr6             29851816 96 + 175400573 G-GGATGCTCTTTCACTGATCTAATTTCAATTCCTTCTGA-AGAAGGAGGTCAGCTGCAGCACTGTCAGGCCACTGTTGCTAGGAGGCTGCCTAGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30086183 96 + 173848474 G-GGATGCTCTTTCACTGATCTAATTTCAATTCCTTCTGA-AGAAGGAGGTCAGCTGCAGCACTGTCAGGCCACTGTTGCTAGGAGGCTGCCTAGCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5892806 96 +   6154872 G-GGATGCTCTTTCACTGATCTAATTTCAATTCCTTCTGA-AGAAGGAGGTCAGCTGCAGCACTGTCAGGCCACTGTTGCTAGGAGGCTGCCTAGCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30082417 96 + 172585720 G-GGATGCTCTTTCACTGATCTAATTTCAATTCCTTCTGA-AGAAGGAGGTCAGCTGCAGTACTGTCAGGCCACTGTTGCTAGGAGGCTGCCTAGCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29744960 96 - 170955103 G-GGATGCTCTTTCACTGATCTAATTTCAATTCCTTCTGA-AGAAGGAGGTCAGCTGCAGTACTGTCAGGCCACTGTTGCTAGGAGGCTGCCTAGCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2793633 96 -   2996164 G-GGATGCTCTTTCACTGATCTAATTTCAATTCCTTCTGA-AGAAGGAGGTCAGCTGCAGTACTGTCAGGCCACTGTTGCTAGGAGGCTGCCTAGCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     544697 96 +    766320 G-GGATGCTCTTTCACTGATCTAATTTCAATTCCTTCTGA-AGAAGGAGGTCAGCTGCAGTACTGTCAGGCCACTGTTGCTAGGAGGCTGCCTAGCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29000794 96 -  71996105 G-GGATGCTCTTTCACTGATCTAATTTCAATCCCTTCTGA-AGAAGGAGGTCAGCTGCAGTACTGTCAGGCCACTGTTGCTAGGAGGCTGCCTAGCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     176998 96 +    290775 G-GGATGCTCTTTCACTGATCTAATTTCAATTCCTTCTGA-AGAAGGAGGTCAGCTGCAGTACTGTCAGGCCACTGTTGCTAGGAGGCTGCCTAGCTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2635720 96 -   3067355 G-GGATGCTCTTTCACTGATCTAATTTCAATTCCTTCTGA-AGAAGGAGGTCAGCTGCAGTACTGTCAGGCCACTGTTGCTAGGAAGCTGCCTAGCTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30077509 96 + 171630274 A-GGATGCTCTTTCACTGATCTAATTTCAATTCTTTCTGA-GGAAGGAGGTCAGCTGCAGCACTGTCAGGCCACTGTTGCTAGGAGGCTGCCTAGCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           224294 96 -    242197 A-GGATGCTCCTTCACTGATCTAATTTCAATTCCTTCTGA-AGAAGGAGGTCAGTTGCAGCACTGTCAGGCCACTGTTGCTAGGAGGCTGCCTAGCTC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     218010 96 -   1771730 A-GGATGCTCTTTCACTGATCTAATTTCAATTCTTTCTGA-AGAAGGAGGTCAGCTGCAGCACTGTCAGGCCACTGTTGCTAGGAGGCTGCCTAGCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     299993 96 -    457564 A-GGATGCTCTTTCACTGATCTAATTTCAATTCCTTCTGA-AGAAGGAGGTCAGCTGCAGCACTGTCAGTCCACTGTTGCTAGGAGGCTGCCTAGCTC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               103459 93 + 123392446 A-GAGCACTCTTCCACCGATCTAACTCCAACTCCTCCCAA-AGAAGGAAGTCAGCTGCAGCACTGCC-GGCCACTGGCGCT-GGACGCTGAC-GGCTC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     597566 95 +    730504 A-GAATGTTCTTCCACTGATCTAACTCCAACTCCTTCCAA-AGAAGGAAGTCAGCTGCGGCACTGCTGGGCCACTGTGGCTAGGATGCTGAC-AGCTC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           111712 97 +  18854210 AGGAATGTTCTTTCACTGATCTAACTCCAATTCCTTCTAA-AGAACAAGGTCAGCTGCAGCACGGTCAGGCCACTGTTGCTAGGATGCCAACAAGCTC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26229953 65 +  26524999 -CAGGTGCACAGTCCCCGATGGGACTCCACTTCCCGCCCACAGGGAGCAGTTAGCTGCA----------------------AGGAGGC----------
i canFam3.chr35            I 5 C 0
s dasNov3.JH582591            40743 40 +    102524 -----------------------------------------AGAGGGTGCCCGGCTG-----------------TGCTGTTGGGGCGCCAGCTGGCTG
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57932703 186 -  94987271 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=522476.000000
s hg38.chr6_GL000254v2_alt   889146 39 +   4827813 AGGTCTGCAGAGGACTCTGAATCTTAGTAGCAGGTCCTC-
s panTro5.chr6             29851912 39 + 175400573 AGGTCTGCAGAGGACTCTGAATCTTAGTAGCAGGTCCTC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30086279 39 + 173848474 AGGTCTGCAGAGGACTCTGAATCTTAGTAGCAGGTCCTC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5892902 39 +   6154872 AGGTCTGCAGAGGACTCTGAATCTTAGTAGCAGGTCCTC-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30082513 39 + 172585720 AGGTCTGCAGAGGACTCTGAATCTTAGAAGCAGGTCCCC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29745056 39 - 170955103 AGGTCTGCAGAGGACTCTGAATCTTAGAAGCAGGTCCCC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2793729 39 -   2996164 AGGTCTGCAGAGGACTCTGAATCTTAGAAGCAGGTCCCC-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     544793 39 +    766320 AGGTCTGCAGAGGACTCTGAATCTTAGAAGCAGGTCCCC-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29000890 39 -  71996105 AGGTCTGCAGAGGACTCTGAATCTTAGAAGCAGGTCCCC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     177094 39 +    290775 AGGTCTGCAGAGGACTCTGAATCTTAGAAGCAGGTCCCC-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2635816 39 -   3067355 AGGTCTGCAGAGGACTCTGAATCTTAGAAGCAGGTCCCC-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30077605 39 + 171630274 AGGACTGCAGGGGACTCTGAATCTTAGAAGCAGGTCCTC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           224390 39 -    242197 AGGTCTGCAGATGACTCTGAATCTTAGAAGCAGGTCCTC-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     218106 39 -   1771730 AGGTCTGCAGAGGACTCTGAATCTTAGAAGCAGGTCCTC-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     300089 39 -    457564 AGGTCTGCAGAGGACTCTGAATCTTAGAAGCAGGTTTTC-
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               103552 39 + 123392446 AGGCCTGCAGAGGACTCTGAACCTTGGAAGCAGATCCTC-
i micMur3.chr6             C 0 I 24
s proCoq1.NW_012152574v1     597661 39 +    730504 AGGCCTGCAGAGGACTCTGAACCTTGGAAGCAGATCCTC-
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           111809 39 +  18854210 AGGACTGCAGAGGACTCTGAATCTTGGAAACAGATCTTT-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57932889 39 -  94987271 agaaaaaaaaagTAGGCTGAGTCCTGGCAGTGGTCCCTC-
i mm10.chr17               I 186 I 1
s canFam3.chr35            26230018 33 +  26524999 ----CTGGAAAGGACCACGAGCCTTCCAAGGAGGTCC---
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            40783 23 +    102524 -----------------GGAAGCTTGGGGGCGGCCCCCAC
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=168940.000000
s hg38.chr6_GL000254v2_alt   889185 36 +   4827813 CACACTCCTTTTCAATACAAACCCACAATCGCCATC
s panTro5.chr6             29851951 36 + 175400573 CACACTCCTTTTCAATACAAACCCACAATCGCCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30086318 36 + 173848474 CACACTCCTTTTCAATACAAACCCACAATCGCCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5892941 36 +   6154872 CACACTCCTTTTCAATACAAACCCACAATTGCCATC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30082552 27 + 172585720 CACAAT-CTTTTCAATACAAACCCACAA--------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29745095 27 - 170955103 CACAAT-CTTTTCAATACAAACCCGCAA--------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2793768 27 -   2996164 CACAAT-CTTTTCAATACAAACCTGCAA--------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     544832 35 +    766320 CGCAAT-CTTTTCAATACAAACCCGCAATCACGATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29000929 35 -  71996105 CGCAAT-CTTTTCAATACAAACCCACAATCACGATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     177133 35 +    290775 CGCAAT-CTTTTCAATACAAACCCGCAATCACGATC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2635855 35 -   3067355 TGCAAT-CTTTTCAATACAAACCCACAATCGCGATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30077644 36 + 171630274 CACAATCCTTTTCAATGCAAACCCGCAATCGCCACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           224429 36 -    242197 CACAATCCTTTTCAATGCAAACCCGCAATCGCCACC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     218145 36 -   1771730 CACAATCCTTTTCAATGCAAATCCGCAATTGCCACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     300128 36 -    457564 CACAATCCTTTTCAATGCAAACCCGCAATAGTCACC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     597700 28 +    730504 CACAGC-CCTCTCAACCCCAGTCCCCCGC-------
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           111848 28 +  18854210 CACAGT-CCTCTTAATCCAAATCTCCCCT-------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57932929 31 -  94987271 CCCGAG-TCCTCTAGAACATAGCCATGAGCTT----
i mm10.chr17               I 1 C 0
s canFam3.chr35            26230051  5 +  26524999 ----------------------CCACA---------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            40806  9 +    102524 -----------------CACACCCCT----------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               103591 24 + 123392446 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=3895353.000000
s hg38.chr6_GL000254v2_alt   889221 245 +   4827813 GTCCCTTCAGTAGAGCTCAAAAGGGAATGAC-CCCATCTTCTGA-CCCCCATAGCCCTGCTTACCACAATGAGGTTCCACATCCTAGCAGCCTCAGCCACCAGCGTGGAGACAGAGCTGCAGCCAGGCATAAGGATGATCTTGATAGGGTCGTTGTAGAGCAGCTCATATAGGTACTTGGTGGCTTGGCCTGGATCACACTGAAAGACAAGAG--GAG---ATGAGGGCAA---GCTCTCCTGGGGCCCCTCCCC
s panTro5.chr6             29851987 245 + 175400573 GTCCCTTCAGTAGAGCTCAAAAGGGAATGAC-CCCATCTTCTGA-CCTCCATAGCCCTGCTTACCACAATGAGGTTCCACATCCTAGCAGCCTCAGCCACCAGCGTGGAGACAGAGCTGCAGCCAGGCATAAGGATGATCTTGATAGGGTCGTTGTAGAGCAGCTCATATAGGTACTTGGTGGCTTGGCCTGGATCACACTGAAAGACAAGAG--GAG---ATGAGGGCAA---GCTCTCCTGGGGCCCCTCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30086354 245 + 173848474 GTCCCTTCAGTAGAGCTCAAAAGGGAATGAC-CCCATCTTCTGA-CCTCCATAGCCCTGCTTACCACAATGAGGTTCCACATCCTAGCAGCCTCAGCCACCAGCGTGGAGACAGAGCTGCAGCCAGGCATAAGGATGATCTTGATAGGGTCGTTGTAGAGCAGCTCATATAGGTACTTGGTGGCTTGGCCTGGATCACACTGAAAGACAAGAG--GAG---ATGAGGGCAA---GCTCTCCTGGGGCCCCTCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5892977 245 +   6154872 GTCCCTTCAGTAGAGCTCAAAAGGGAATGAC-CCCATCTTCTGA-CCCCCATAGCCCTGCTTACCACAATGAGGTTCCACATCCTAGCAGCCTCAGCCACCAGCGTGGAGACAGAGCTGCAGCCAGGCATAAGGATGATCTTGATAGGGTCGTTGTAGAGCAGCTCATATAGGTACTTGGTGGCTTGGCCTGGATCACACTGAAAGACAAGAG--GAG---ATGAGGGCAA---GCTCTCCTGGGGCCCCTCCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30082579 246 + 172585720 -TCCCTTTAGTAGAGCTCAAAAGGGAATGAC-CCCATCTTTTGA-CCCCCATAGCCCTGCTTACCACAATGAGGTTCCACATCCTAGCAGCCTCAGCCACCAGCGTGGAGACAGAGCTGCAGCCAGGCATAAGGATGATCTTGATAGGGTCGTTGTAGAGCAGCTCATACAGGTACTTGGTGGCTTGGCCTGGATCACACTGAAAGACAAGAGAAGAG---ATGAGGGCAA---GCTCTCCTGGGGCTCCTCCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29745122 246 - 170955103 -TCCCTTTAGTAGAGCTCAAAAGGGAATGAC-CCCATCTTTTGA-CCCCCATAGCCCTGCTTACCACAATGAGGTTCCACATCCTAGCAGCCTCAGCCACCAGCGTGGAGACAGAGCTGCAGCCAGGCATAAGGATGATCTTGATAGGGTCGTTGTAGAGCAGCTCATACAGGTACTTGGTGGCTTGGCCTGGATCACACTGAAAGACAAGAGAAGAG---ATGAGGGCAA---GCTCTCCTGGGGCCCCTCCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2793795 246 -   2996164 -TCCCTTTAGTAGAGCTCAAAAGGGAATGAC-CCCATCTTTTGA-CCCCCATAGCCCTGCTTACCACAATGAGGTTCCACATCCTAGCAGCCTCAGCCACCAGCGTGGAGACAGAGCTGCAGCCAGGCATAAGGATGATCTTGATAGGGTCGTTGTAGAGCAGCTCATACAGGTACTTGGTGGCTTGGCCTGGATCACACTGAAAGACAAGAGAAGAG---ATGAGGGCAA---GCTCTCCTGGGGCCCTTCCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     544867 248 +    766320 GTCCCTTTAGTAGAGCTCAAAAGGGAATGACTCCCATCTTTTGA-CCCCCATAGCCCTGCTTACCACAATGAGGTTCCACATCCTAGCAGCCTCAGCCACCAGCGTGGAGACAGAGCTGCAGCCAGGCATAAGGATGATCTTGATAGGGTCGTTGTAGAGCAGCTCATACAGGTACTTGGTGGCTTGGCCTGGATCACACTGAAAGACAAGAGAAGAG---ATGAGGGCAA---GCTCTCCTGGGGCCCCTCCCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29000964 247 -  71996105 GTCCCTTTAGTAGAGCTCAAAAGGGAATGAC-CCCATCTTTTGA-CCCCCATAGCCCTGCTTACCACAATGAGGTTCCACATCCTAGCAGCCTCAGCCACCAGTGTGGAGACAGAGCTGCAGCCAGGCATAAGGATGATCTTGATAGGGTCGTTGTAGAGCAGCTCATACAGGTATTTGGTGGCTTGGCCTGGATCACACTGAAAGACAAGAGAAGAG---ATGAGGGCAA---GTTCTCCGGGGGCCCCTCCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     177168 248 +    290775 GTCCCTTTAGTAGAGCTCAAAAGGGAATGACTCCCATCTTTTGA-CCCCCATAGCCCTGCTTACCACAATGAGGTTCCACATCCTAGCAGCCTCAGCCACCAGCGTGGAGACAGAGCTGCAGCCAGGCATAAGGATGATCTTGATAGGGTCGTTGTAGAGCAGCTCATACAGGTACTTGGTGGCTTGGCCTGGATCACACTGAAAGACAAGAGAAGAG---ATGAGGGCAA---GCTCTCCTGGGGCCCCTCCCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2635890 247 -   3067355 GTCCCTTTAGTAGAGCTCAAAAGGGAGTGAC-CCCATCTTTTGA-CCCCCATAGCCCTACTTACCACAATGAGGTTCCACATCCTAGCAGCCTCAGCCACCAGCGTGGAGACAGAGCTGCAGCCAGGCATAAGGATGATCTTGATAGGGTCGTTGTAGAGCAGCTCATACAGGTACTTGGTGGCCTGGCCTGGATCACACTGAAAGACAAGAGAAGAG---ATGAGGGCAA---GCTCTCCTGGGGCCCCTCCCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30077680 247 + 171630274 GTCCCTTTAGTAGAGCTCAAAAGAGAATGAC-CCCATCTTCTGA-CCCCCGCAGCCCTGCTTACCACAATGAGGTTCCACATCCGAGCAGCCTCAGCCACCAGCGTAGAGACAGAGCTGCAGCCAGGCATGAGGATGATCTTGATGGGGTCGTTGTAGAGCAGCTCATATAGGTACTTGGTGGCTTGGCCTGGATCACACTGGAAGAGAAGAGAGGAG---GTGAGGGCAA---GCTCTTCTGGGGCCCCTCCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           224465 247 -    242197 ATCCCTTTAGTAGAGCTCAAAAGAGAATGAC-CCCATCTTCTGA-CCCCCCCAGCCCTGCTTACCACAATGAGGTTCCACATCCGAGCAGCCTCAGCCACCAGCGTAGAGACAGAGCTGCAGCCAGGCATGAGGATGATCTTGATGGGGTCGTTGTAGAGCAGCTCATATAGGTACTTGGTGGCTTGGCCTGGATCACACTGGAAGAGAAGAGAGGAG---ATGAGGGCAA---GCTCTCCTGGGACCCCTCCCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     218181 246 -   1771730 GTCCCTTTAGTAGAGCTCAAAAGAGAATGAC-CCCATCTTCTGA-CCCCC-CAGCCCTGCTTACCACAATGAGGTTCCACATCCGAGCAGCCTCAGCCACCAGCGTAGAGACAGAGCTGCAGCCGGGCATGAGGATGATCTTGATGGGGTCATTGTAGAGCAGCTCATATAGGTACTTGGTGGCTTGGCCTGGATCACACTAGAAGAGAAGAGAGGAG---ATGAGGGCAA---GCTCTCCTGGGGCCCCTCCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     300164 247 -    457564 GTCCCTTTAGTAGAGCTCAAAAGAGAATGAC-CCCATCTTCTGA-CCCCCACAGCCCTGCTTACCACAATGAGGTTCCACATCCGAGCAGCCTCAGCCACCAGTGTAGAGACAGAGCTGCAGCCGGGCATGAGGATGATCTTGATGGGGTCGTTGTAGAGCAGCTCATATAGATACTTGGTGGCTTGGCCTGGATCACACTGGAAGAGAAGAGAGGAG---ATAAGGGCAA---GCTCTCCTGTGGCCCCTCCCC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               103615 249 + 123392446 TTTCCTTCAGCAGAGCCCAAAAGGGGGTGAC-CCCACCTGCTCA--CTCCACAGCCCTGCTTACCACAATGAGGTTCCACATCCTGGCAGCCTCGGCCACCAGCGTGGACACAGAGCTGCAGCCAGGCATAAGGATGATCTTGATGGGGTCGTTGTAGAGCAGCTCGTACAGGTACTTGGTGGCTTGGCCTGGGTCACACTGAATGGGGGGAGGAGAAGTCGGGAGGGCAG---GCTCTCCTAGGGCCCCTCCCC
i micMur3.chr6             I 24 C 0
s proCoq1.NW_012152574v1     597728 243 +    730504 TTTCCCTCAGTAGAGTCCAAAAGGGAGCGAC-CCCACCTTCTCG-CCCCCACAGCCCTGCTTACCACAATGAGGTTCCACATCCTGGCAGCCTCGGCCACCAGCGTGGACACGGAGCTGCAGCCAGGCATGAGGATGATCTTGATAGGGTCGTTGTAGAGCAGCTCGTACAGGTACTTGGTGGCTTGGCCTGGATCACACTGAATGGGGGAAGG-------GTGAGAGCAG---GCTCTCCTAGGGCCCCTCCCC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           111876 245 +  18854210 -TTCCTTTA-TAGAACCCTAAAGGAAACGAC-CCCATCTTCTGACCCCCCACAGCCCTACTTACCACAATGAGGTTCCACATCCTTGCAGCCTCAGCCACCAGCGTGGAGACAGAGCTGCAGCCAGGCATGAGGATGATCTTGATAGGGTCGTTGTAGAGCAGCTCATACAGATACTTGGTGGCTTGACCTGGGTCGCACTGAATGGGAGGGAGAAG----ATGAGGGTTG---GCTGTCCCAGGGCCCCTCCCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57932960 228 -  94987271 -TCTACTCAACCCAGCCCAAAAGGAAGTGAC--------------CCCCT---GCCTTGCATACCACAATAAGGTTCCACATCCGGGCAGCCTCGGCTACCAGTGTGGACACAGAGCTGCAGCCGGGCATGAGGATGATCTTGATGGGGTCGTTGTAGAGTAGTTCATACAAGTACTTGGTGGCTTGCCCTGGGTCGCACTGAGGGAGGAAGGAGGAA---ATGAAGGTTG---GCTCCC---AAGCCCCTTACC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26230056 227 +  26524999 GTCTCCTCA----CACACAAAGTGGGAGGAC-CT-----------TCTTTCCAGCCCAGCCTACCACAATGAGGTTCCACATCCTGGCAGCCTCAGCCACAAGCGTGGAGACAGAGCTGCAGCCAGGCATGAGGATGATCTTGATGGGGTCGTTGTAGAGCAGTTCATACAGGTACTTGGTAGCTTGGCCTGGGTCACACTGAATG---------GAG---AGGGGTACAATTGGTCCTCCTGGTGCTACTCCCC
i canFam3.chr35            C 0 I 45
s dasNov3.JH582591            40815 218 +    102524 ---CCTTCTGC--AGCCCCGAAGGGC---AC--------------GCCCCACGGCCCT-CCTACCACGATGAGGTTCCACATCCTGGCGGCCTCGGCCACCAGCGTGGACACGGAGCTGCAGCCGGGCATGAGGATGATCTTGATGGGGTCGTTGTAGAGCAGCTCGTACAGGTACTTGGTGGCTTGGCCGGGGTCACACTGCAGGA--------GGG---GAGGGGGCCG---GCTCTCCTCAGGCCCCTCCCT
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=731767.000000
s hg38.chr6_GL000254v2_alt   889466 64 +   4827813 TGTCTGCA-----ATTCCTGC---TCTTATCTT--------TCTC--GAACAAATTAGTTCCTTT-CTCAATTACTCACTTTC
s panTro5.chr6             29852232 64 + 175400573 TGTCTGCA-----ATTCCTAC---TCTTATCTT--------TCTC--GAACAAATTAGTTCCTTT-CTCAATTACTCACTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30086599 64 + 173848474 TGTCTGCA-----ATTCCTAC---TCTTATCTT--------TCTC--GAACAAATTAGTTCCTTT-CTCAATTACTCACTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5893222 64 +   6154872 TGTCTGCA-----ATTCCTAC---TCTTATCTT--------TCTC--GAACAAATTAGTTCCTTT-CTCAATTACTCACTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30082825 64 + 172585720 TGTCTACA-----ATTCCTAC---TCTTACCTT--------TCTC--GAACAAATTAGTTCCTTT-CTCAATTACTCACTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29745368 64 - 170955103 TGTCTACA-----ATTCCTAC---TCTTACCTT--------TCTC--GAACAAATTAGTTCCTTT-CTCAATTACTCACTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2794041 64 -   2996164 TGTCTACA-----ATTCCTAC---TTTTACCTT--------TCTC--GAACAAATTAGTTCCTTT-CTCAATTACTCACTTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     545115 64 +    766320 TGTCTACA-----ATTCCTAC---TCTTACCTT--------TCTC--GAACAAATTAGTTCCTTT-CTCAATTACTCACTTTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29001211 64 -  71996105 TGTCTACA-----ATTCCTAC---TCTTACCTT--------TCTC--GAACAAATTAGTTCCTTT-CTCAATTACTCACTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     177416 64 +    290775 TGTCTACA-----ATTCCTAC---TCTTACCTT--------TCTC--GAACAAATTAGTTCCTTT-CTCAATTACTCACTTTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2636137 64 -   3067355 TGTCTGCA-----ATTCCTAC---TCTTATCTT--------TCTT--GAACAAATTAGTTCCTTT-CTCAACTACTCACTTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30077927 64 + 171630274 TGTCTGCA-----ACTCCCAC---TCTTATCTT--------TCTT--GAACAAATTAGTTCCTTT-CTCAATTACTCACTTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           224712 64 -    242197 TGTCTGCA-----ACTCCTAC---TCTTATCTT--------TCTT--GAACAAATTAGCTCCTTT-CTCAATTACTCACTTTC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     218427 64 -   1771730 TGTCTGCA-----ACTCCTAC---TCTTATCCT--------TCTT--GAACAAATTAGTTTCTTT-CTCAATTACTCACTTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     300411 64 -    457564 TGTCTGCA-----ACTCCTAC---TCTTATCTT--------TCTT--GAACAAATTAGTTCCTTT-CTCAATTACTCGCTTTC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               103864 61 + 123392446 TGCCTGTA-----TTTCCCAT---TCTTTTCTC--------TCCT-----CAAACTAGTTCCTTT-CTCAGTTACTCACTTGC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     597971 59 +    730504 TGCCTGTA-----TTTCCCA-----CTTGTCTC--------TTCT-----CAAACTAGTTCCTTT-CTCAGTTACTCACTTGC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           112121 66 +  18854210 TGCCTGCA-----ATTCCCAC---TCTTTTATA--------TTTCTCAGACAAACTAGTTCCTTT-CTCAATTACCCACTTTC
i otoGar3.GL873550         C 0 I 290
s mm10.chr17               57933188 81 -  94987271 cacacacacacacacacatacacaTCTCACATTGCCTAGTGTCTT--GGGCAACCTAGTGCCTTTCCTTAACTATTCACTGCC
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            41033 43 +    102524 ---TCCCG-----GCTGCTCC---TCTCCTTCC--------TCCC--GG-----CTGGTCCTCTG-CTGA-------------
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26230283 45 +  26524999 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=626821.000000
s hg38.chr6_GL000254v2_alt   889530 52 +   4827813 ATCATTAATTACCGTTTTCTTCTCCTTTCTGGCATCTCTTCCTGTCAAGTGC
s panTro5.chr6             29852296 52 + 175400573 ATCATTAATTACCATTTTCTTCTCCTTTCTGGCATCTCTTCCTGTCAAGTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30086663 52 + 173848474 ATCATTAATTACCATTTTCTTCTCCTTTCTGGCATCTCTTCCTGTCAAGTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5893286 52 +   6154872 ATCATTAATTACCATTTTCTTCTCCTTTCTGGCATCTCTTCCTGTCAAGTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30082889 52 + 172585720 ATCATTAATTACCATTTTCTTCTCCTTTCTGGCATCTCTTCCTGTCAAGAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29745432 52 - 170955103 ATCATTAATTACCATTTTCTTCTCCTTTCTGGCATCTCTTCCTGTCAAGAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2794105 52 -   2996164 ATCATTAATTACCATTTTCTTCTCCTTTCTGGCATCTCTTCCTGTCAAGAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     545179 52 +    766320 ATCATTAATTACCATTTTCTTCTCCTTTCTGGCATCTCTTCCTGTCAAGAGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29001275 52 -  71996105 ATCATTAATTACCATTTTCTTCTCCGTTCTGGCATCTCTTCCTGTCAAGAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     177480 52 +    290775 ATCATTAATTACCATTTTCTTCTCCTTTCTGGCATCTCTTCCTGTCAAGAGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2636201 52 -   3067355 ATCATTAATTACCATTTTCTTCTCCTTTCTGGCATCTCTTCCTGTCAAGAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30077991 51 + 171630274 ATCATTAATTACCA-TTTCTTCTCCTTCCTGTCATCTCTTCCTGCCAAGTGT
i calJac3.chr4             C 0 I 154
s saiBol1.JH378357           224776 52 -    242197 ATCATTAATTACCATTTTCTTCTCCTTCCTGTCATCTCTTCCTGTCAAGTGT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     218491 52 -   1771730 ATCATTAATTACCATTTTCTTTTCCTTCCTGTCATCTCTTCCTGTCAAGTGT
i cebCap1.NW_016107755v1   C 0 I 158
s aotNan1.NW_018509740v1     300475 52 -    457564 ATCATTAATTACCATTTTCTTCTCCTTCCTGTCATCTCTTCCTGTCAAGTGT
i aotNan1.NW_018509740v1   C 0 I 155
s micMur3.chr6               103925 51 + 123392446 ATTACT-ACTACTATTTTCCTCTCCTTCCTGACATCTCTTCCTGTCGAGCAA
i micMur3.chr6             C 0 I 1
s proCoq1.NW_012152574v1     598030 51 +    730504 ATTATT-ATTACTGTTTTCCTCTCCTTGCTGACATTGTTTCCTGTCAGGTAT
i proCoq1.NW_012152574v1   C 0 I 1
s otoGar3.GL873550           112477 51 +  18854210 ATCATT-ATTACCATTTTCTTCTCCTTCCTGACATCTCTTCCTGTCAAGTGA
i otoGar3.GL873550         I 290 I 1
s mm10.chr17               57933269 29 -  94987271 -------AGCACCGCATTCTT----------------CTTCCTGTCAAATTT
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            41076 33 +    102524 ------------CACCCTCTTCACCCTCTT-------CTTCCCATCAAGCTC
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26230283 45 +  26524999 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=26346.000000
s hg38.chr6_GL000254v2_alt   889582 2 +   4827813 CT
s panTro5.chr6             29852348 2 + 175400573 CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30086715 2 + 173848474 CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5893338 2 +   6154872 CT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30082941 2 + 172585720 CT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29745484 2 - 170955103 CT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2794157 2 -   2996164 CT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     545231 2 +    766320 CT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29001327 2 -  71996105 CT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     177532 2 +    290775 CT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2636253 2 -   3067355 CT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30078196 2 + 171630274 cT
i calJac3.chr4             I 154 C 0
s saiBol1.JH378357           224828 2 -    242197 CT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     218701 2 -   1771730 cT
i cebCap1.NW_016107755v1   I 158 C 0
s aotNan1.NW_018509740v1     300682 2 -    457564 cT
i aotNan1.NW_018509740v1   I 155 C 0
s micMur3.chr6               103977 2 + 123392446 TT
i micMur3.chr6             I 1 C 0
s proCoq1.NW_012152574v1     598082 2 +    730504 TT
i proCoq1.NW_012152574v1   I 1 C 0
s otoGar3.GL873550           112529 2 +  18854210 TT
i otoGar3.GL873550         I 1 C 0
s dasNov3.JH582591            41109 2 +    102524 CT
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57933298 0 -  94987271 C
e canFam3.chr35            26230283 45 +  26524999 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=66587.000000
s hg38.chr6_GL000254v2_alt   889584  9 +   4827813 T------TTTTCTCC-----
s panTro5.chr6             29852350  9 + 175400573 T------TTTTCTCC-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30086717  9 + 173848474 T------TTTTCTCC-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5893340  9 +   6154872 T------TTTTCTCC-----
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30082943  9 + 172585720 T------TTTTCTCC-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29745486  9 - 170955103 T------TTTTCTCC-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2794159  9 -   2996164 T------TTTTCTCC-----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     545233  9 +    766320 T------TTTTCTCC-----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29001329  9 -  71996105 T------TTTTCTCC-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     177534  9 +    290775 T------TTTTCTCC-----
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2636255  9 -   3067355 T------TTTTCTCC-----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30078198  9 + 171630274 T------TTTTCTCC-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           224830  9 -    242197 T------TTTTTTCC-----
i saiBol1.JH378357         C 0 I 159
s cebCap1.NW_016107755v1     218703  9 -   1771730 T------TTTTCTCC-----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     300684  9 -    457564 T------TTTTCTCC-----
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               103979 12 + 123392446 TTT---CTTTCCTTC-----
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     598084 12 +    730504 TTT---CTTTCCTTC-----
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           112531  9 +  18854210 T------TTTTCTTC-----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57933298 11 -  94987271 -CTAGACTTTGC--------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26230328  9 +  26524999 T------GTTTCCCC-----
i canFam3.chr35            I 45 C 0
s dasNov3.JH582591            41111 10 +    102524 ----------TCTCCAGTCC
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=891931.000000
s hg38.chr6_GL000254v2_alt   889593 66 +   4827813 TCTTTCATTAAACTTCCTTCTC-TGTCTTCCATCTGGAGCCTTACCCATCACCTCTCCTGCACACCC
s panTro5.chr6             29852359 66 + 175400573 TCTTTCATTAAACTTCCTTCTC-TGTCTTCCATCTGGAGCCTTACCCATCACCTCTCCTGCACACCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30086726 66 + 173848474 TCTTTCATTAAACTTCCTTCTC-TGTCTTCCATCTGGAGCCTTACCCATCACCTCTCCTGCACACCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5893349 66 +   6154872 TCTTTCATTAAACTTCCTTCTC-TGTCTTCCATCTGGAGCCTTACCCATCACCTCTCCTGCACACCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30082952 66 + 172585720 TCTTTCATTAAACTTCCTTCTC-TGTCTTCCATTTGGAGCCTTACCCATCACCTCTCCTGCACACCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29745495 66 - 170955103 TCTTTCATTAAACTTCCTTCTC-TGTCTTCCATTTGGAGCCTTACCCATCACCTCTCCTGCACACCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2794168 66 -   2996164 TCTTTCATTAAACTTCCTTCTC-TGTCTTCCATTTGGAGCCTTACCCATCACCTCTCCTGCATACCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     545242 66 +    766320 TCTTTCATTAAACTTCCTTCTC-TGTCTTCCATTTGGAGCCTTACCCATCACCTCTCCTGCACACCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29001338 66 -  71996105 TCTTTCATTAAACTTCCTTCTC-TGTCTTCCATTTGGAGCCTTACCCATCACCTCTCCTGCACACCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     177543 66 +    290775 TCTTTCATTAAACTTCCTTCTC-TGTCTTCCATTTGGAGCCTTACCCATCACCTCTCCTGCACACCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2636264 66 -   3067355 TCTTTCATTAAACTTCCTCCTC-TGTCTTCCATCTGGAGCCTTACCCATCGCCTCTCCTGCACACCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30078207 66 + 171630274 TCTTTCATTAAACTTCCTTCTC-TGTCTTCCATCTGGAGCCTTATCCATCACCTCTCCCGCACCCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           224998 66 -    242197 TCTTTCATTAAACTTTCTTCTC-TGTCTTCCATCGGGAGCCTTATCCATCACCTCTCCCGAACACCC
i saiBol1.JH378357         I 159 C 0
s cebCap1.NW_016107755v1     218712 66 -   1771730 TCTTTCATTAAACTTCCTTCTC-TGTCTTCCATCTGGAGCCTTATCCATCACCTCTCCCGCACACCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     300693 66 -    457564 TCTTTCATTAAACTTCCTTCTC-TGTCTTCCATCTGGAGCCTTATCCATCACCTCTCCCGCATACCC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               103991 66 + 123392446 TTTTTCATTAAACTCCCTTCTC-TGTCTTCCAGCTGGTGCCTTATCCATACGCCCTCCTGCACACCC
i micMur3.chr6             C 0 I 161
s proCoq1.NW_012152574v1     598096 65 +    730504 TCTTTCATTAAACTCCCTTCTC-TGTCTTCCAGCTGGTGCC-TATCCATACCCCCTCCTGCACACTT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           112540 66 +  18854210 TCTTTCATTAAACACCCTTCTC-TGTCTTCCATCTGGCACCTTACCCATATCCTCTTCTGCACACCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57933309 67 -  94987271 TTTTGCCTTAAGCGTCCTTCTCTTGTCTTGCATCTGGCACGTTGGCCCTACTCAAAACTGCATGCCC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26230337 56 +  26524999 TCATGCATGAAACACCCTCCCC-TCCCATCCTCCTGCCTCCTCACCTGGGTTCTCTT----------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            41121 46 +    102524 --------TCAACGCCCCTCTC-CTGCACCCACCTGGCACCTGGCCCCCCGCCTT------------
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=566293.000000
s hg38.chr6_GL000254v2_alt   889659 61 +   4827813 CTCCTTTGGTATTAATGAACATACCACCT---------TACCTCCTTTCAGCTC-ACCCTCAGACATCCCC-------
s panTro5.chr6             29852425 61 + 175400573 CTCCTTTGGTATTAATGAACATACCACCT---------TACCTCCTTTCAGCTC-ACCCTCAGACATCCCC-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30086792 61 + 173848474 CTCCTTTGGTATTAATGAACATACCACCT---------TACCTCCTTTCAGCTC-ACCCTCAGACATCCCC-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5893415 61 +   6154872 CTCCTTTGGTATTAATGAACATACCACCT---------TACCTCCTTTCAGCTC-ACCCTCAGACATCCCC-------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30083018 56 + 172585720 CTCCTTTGGTATTAATGAATATACTACCT---------TACCTCCTTTCAGCTC-ACCCTCAGA-----CC-------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29745561 56 - 170955103 CTCCTTTGGTATTAATGAATATACTACCT---------TACCTCCTTTCAGCTC-ACCCTCAGA-----CC-------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2794234 56 -   2996164 CTCCTTTGGTATTAATGAATATACTACCT---------TACCTCCTTTCAGCTC-ACCCTCAGA-----CC-------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     545308 56 +    766320 CTCCTTTGGTATTAATGAATATACCATCT---------TACCTCCTTTCAGCTC-ACCCTCAAA-----CC-------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29001404 56 -  71996105 CTCCTTTGGTATTAATGAATATACCACCT---------TATCTCCTTTCAGCTC-ACCCTCAGA-----CC-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     177609 56 +    290775 CTCCTTTGGTATTAATGAATATACCATCT---------TACCTCCTTTCAGCTC-ACCCTCAAA-----CC-------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2636330 56 -   3067355 CTCCTTTGGTATTAATGAACATATCACCT---------TACCTCCTTTCAGCTC-ACCCTCAGA-----CC-------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30078273 70 + 171630274 CTCCTTTGGTATTAATGAGCATACCACCTTAATGAGCATACCTCCTTTCAGCTC-ACCCTCAGACATCCCC-------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           225064 61 -    242197 CTCCTTTGGTATTAATGAGCATACCACCT---------TACCTCCTTTCAGCTC-ACCCTCAGACATCCCC-------
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     218778 61 -   1771730 CTCCTTTGGTATTAATGAGCATACCACTT---------TACCTCCTTTCAGTTC-ACCCTCAGACATCGCC-------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     300759 61 -    457564 CTCCTTTGGTATTAATGAGCATACCACCT---------TACCTCCTTTCAGCTC-ACCCTCAGATATCCCC-------
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     598161 59 +    730504 --CTGCGGGTGCTAATGCATACACTGCCT---------TCCCTCCTTTAGGCTC-ACCCTCAGACATCCCC-------
i proCoq1.NW_012152574v1   C 0 I 83
s otoGar3.GL873550           112606 37 +  18854210 CTCCTTAGGTACTAA---------------------------------GGGCTC-ATTCTCTGATGGTCCC-------
i otoGar3.GL873550         C 0 I 7
s mm10.chr17               57933376 61 -  94987271 TTCCTTCCATATTAACACATACTCTGCTG---------TCTCCCACTTCTGCTT-ATTCTCAAACAACCCT-------
i mm10.chr17               C 0 I 7
s canFam3.chr35            26230393 61 +  26524999 CTCTGCCAGAACTAGTGCACAGACCCCCT---------GGATCCCCTTCAGCCC-CTTCCCACACATCCCT-------
i canFam3.chr35            C 0 I 5
s dasNov3.JH582591            41167 38 +    102524 ----------------------------------------CCCCTTCTCAGCTCTGTCCTCAGACACCCCGGATCCAT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               104057 161 + 123392446 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=875469.000000
s hg38.chr6_GL000254v2_alt   889720 80 +   4827813 CTTCCCTCTGTCA-CCAAG------CCCTTT--ACCCCATGTTTCTATGCTTCAAACACCAGTGGGTGGAAGA--AGTCAGTAGGAATACG
s panTro5.chr6             29852486 82 + 175400573 CTTCCCTCTGTCA-CCAAG------CCCTTT--ACCCCATGTTTCTATGCTTCAAACACCAGTGGGTGGAAGAAGAGTCAGTAGGAATATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30086853 82 + 173848474 CTTCCCTCTGTCA-CCAAG------CCCTTT--ACCCCATGTTTCTATGCTTCAAACACCAGTGGGTGGAAGAAGAGTCAGTAGGAATATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5893476 82 +   6154872 CTTCCCTCTGTCA-CCAAG------CCCTTT--ACCCCATGTTTCTATGCTTCAAACACCAGTGGGTGGAAGAAGAGTCAATAGGAATATA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30083074 81 + 172585720 CTTCCCTTTGTCA-CCAGG------CCCTTT--ACCCCATGTTTCTATGCTCCAAACACCAGTGGGTAGAAAA-GAGTCAGTAGGAATATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29745617 81 - 170955103 CTTCCCTTTGTCA-CCAGG------CCCTTT--ACCCCATGTTTCTATGCTCCAAACACCAGTGGGTAGAAAA-GAGTCAGTAGGAATATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2794290 83 -   2996164 CTTCCCTTTGTCA-CAAGG------CCCTTTACACCCCATGTTTCTATGCTCCAAACACCAGTGGGTAGAAAA-GAGTCAGTAGGAATATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     545364 81 +    766320 CTTCCCTTTGTCA-CCAGG------CCCTTT--ACCCCATGTTTCTATGCTCCAAACACCAGTGGGTAGAAAA-GAGTCAGCAGGAATATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29001460 81 -  71996105 CTTCCCTTTGTCA-CCAGG------CCCTTT--ACCCCATGTTTCTATGCTCCAAACACCAGTGGGTAGAAAA-GAGTCAGTAGGAATATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     177665 81 +    290775 CTTCCCTTTGTCA-CCAGG------CCCTTT--ACCCCATGTTTCTATGCTCCAAACACCAGTGGGTAGAAAA-GAGTCAGTAGGAATATG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2636386 81 -   3067355 CTTCCCTTTGTCA-CCAGG------CCCTTT--ACCCCATGTTTCTATGCTCCAAACACCAGTGGGTAGAAAA-GAGTCAGTAGGAATATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30078343 81 + 171630274 TTTCCCTCTGTCA-CCAGG------CCCTTT--ACCCCATGTTTCTATGCTCCAAACATCAGTGGGTAGAAAA-GAGTCAGCAGGAATATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           225125 81 -    242197 CTTCCCTCTGTCA-TCAGG------CCCTTT--ACCCCATGTTTCTATGCTCCAAACATCAGTGGGTAGAAAA-GAGTCAGCAGGAATATG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     218839 81 -   1771730 ATTCCCTCTGTCA-CCAGG------CCCTTT--ACCCCATGTTTCTATGCTCCAAATATCAGTGGGTAGAAAA-GAGTCAGCAGGAATATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     300820 81 -    457564 CTTCCCTCTGTCA-CTAGG------CCCTTT--ACCCCATGTTTCTATGCTCCAAACATCAGTGGGTAGAAAA-GAGTCAGCAGGAATACA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           112650 71 +  18854210 CCTTACTCTGTCC-CCAA-------CCCTTT--ACCCCATGTGTCTATGC-------ATCTGTGGGTAGAA---GAGCCTGTAAGAATATG
i otoGar3.GL873550         I 7 I 1
s mm10.chr17               57933444 78 -  94987271 CTCTCTTTGGTCA-TCTCTGTACCCCACCTC--ATCCCATGTTTATAGGGTCTGAACATC--TGCTCAGGAAA--------TACAAATACG
i mm10.chr17               I 7 C 0
s canFam3.chr35            26230459 82 +  26524999 CACCATCTTCTCACCCCAG------TCCTTG--TCTCCAGGTCTGTAAGTGCTAAGTATCTGTGAGTAGAAAA-GAGTCTGCAGGAATGTG
i canFam3.chr35            I 5 I 1
s dasNov3.JH582591            41205 81 +    102524 CTTCCCTCCCTCA-CCCCG------TTCCCT--ACTGCACGCTTCTGTGCACCCAGCATCTGTGGGCAGAAAA-GAGCCGACAGGAACACG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               104057 161 + 123392446 I
e proCoq1.NW_012152574v1     598220 83 +    730504 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=156258.000000
s hg38.chr6_GL000254v2_alt   889800 14 +   4827813 -GTAAACTCTTTCCA
s panTro5.chr6             29852568 14 + 175400573 -GTAAACTCTTTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30086935 14 + 173848474 -GTAAACTCTTTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5893558 14 +   6154872 -GTAAACTCTTTCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30083155 14 + 172585720 -GTAAACTCTTTCCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29745698 14 - 170955103 -GTAAACTCTTTCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2794373 14 -   2996164 -GTAAACTCTTTCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     545445 14 +    766320 -GTAAACTCTTTCCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29001541 14 -  71996105 -GTAAACTCTTTCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     177746 14 +    290775 -GTAAACTCTTTCCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2636467 14 -   3067355 -GTAAACTCTTTCCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30078424 14 + 171630274 -GCAAACTCTCTCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           225206 14 -    242197 -GTAAACTCTCTCTA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     218920 14 -   1771730 -GTAAGCTCTCTCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     300901 14 -    457564 -GTACACTCTCTCCA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     598303 14 +    730504 -GTAAACTCTCCCCC
i proCoq1.NW_012152574v1   I 83 C 0
s otoGar3.GL873550           112722 14 +  18854210 -GTAAACTCTCCCCC
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57933522  9 -  94987271 ------TTCTCTGCA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26230542 14 +  26524999 -ATCAACCCTCCCTA
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            41286 15 +    102524 GAAGAAGCCGCCCCA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               104057 161 + 123392446 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=7216847.000000
s hg38.chr6_GL000254v2_alt   889814 527 +   4827813 CATCC----CCAGATAGCTTGCTCAAAGCCATATTATGAAAATTCCTTCCTCACCTCTGC-AAACCCC--TTCTCCCCACCTTCCATTTGTTTCCTCCCTCTTCTC-TTTTCAGAGCTAGTGATAAGTAAA----GAGAGAACA-GGAACAAGACCAGTAGGGGGT-CC-----CGCTCAGTGATCCA------T-CCCTCCTGCTGGGCGCTGACATTTGACAGGTCCATTA-GAAAAAAAGACA--CT---------GGGGGGTGGAAGTAGGGAAGAATGTAGGATGAGGAAAGAA-CAGAGAGAATGA-ATAGAATGGAACTCTCAAGAAACCAGACAATTTGAGAGGTGCCTT-AAAGAGAGGCT---TGGAGCTAGGGAAAGTAAACAA-GCAGAAAGC-TGGAGAAGAAAGGAAGCTTGGGAGGA-GGGGAAA-TGGGGGAGGAAGAGCCAGCCTTGGGTCTCCCACTGCCTGTTCCCCTCCCACTGATATATGACATTTCAGAAGCTGCTGGAA-CCCCAATGCATGTGAAGACGAAATGGCAGCCAGTGGGGAGCCAGGGCAGAGGG
s panTro5.chr6             29852582 527 + 175400573 CATCC----CCAGATAGCTTGCTCAAAGCCATATTATGAAAATTCCTTCCTCACCTCTGC-AAACCCC--TTCTCCCCACCTTCCATTTGTTTCCTCCCTCTTCTC-TTTTCAGAGCTAGTGATAAGTAAA----GAGAGAACA-GGAACAAGACCAGTAGGGGGT-CC-----CGCTCAGTGATCCA------T-CCCTCCTGCTGGGCGCTGACATTTGACAGGTCCATTA-GAAAAAAAGACA--CT---------GGGGGGTGGAAGTGGGGAAGAATGTAGGATGAGGAAAGAA-CAGACAGAATGA-ATAGAATGGAACTCTCAAGAAACCAGACAATTTGAGAGGTGCCTT-AAAGAGAGGCT---TGGAGCTAGGGAAAGTAAATAA-GCAGAAAGC-TGGAGAAGAAAGGAAGCTTGGGAGGA-GGGGAAA-TGGGGGAGGAAGAGCCAGCCTTGGGTCTCCCACTGCCTGTTCCCCTCCCACTGATATATGACATTTCAGAAGCTGCTGGAA-CCCCAATGCATGTGAAGACGAAATGGCAGCCAGTGGGGAGCCAGGGCAGAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30086949 529 + 173848474 CATCC----CCAGATAGCTTGCTCAAAGCCATATTATGAAAATTCCTTCCTCACCTCTGC-AAACCCCTTTTCTCCCCACCTTCCATTTGTTTCCTCCCTCTTCTC-TTTTCAGAGCTAGTGATAAGTAAA----GAGAGAACA-GGAACAAGACCAGTAGGGGGT-CC-----CGCTCAGTGATCCA------T-CCCTCCTGCTGGGCGCTGACATTTGACAGGTCCATTA-GAAAAAAAGACA--CT---------GGGGGGTGGAAGTGGGGAAGAATGTAGGATGAGGAAAGAA-CAGACAGAATGA-ATAGAATGGAACTCTCAAGAAACCAGACAATTTGAGAGGTGCCTT-AAAGAGAGGCT---TGGAGCTAGGGAAAGTAAACAA-GCAGAAAGC-TGGAGAAGAAAGGAAGCTTGGGAGGA-GGGGAAA-TGGGGGAGGAAGAGCCAGCCTTGGGTCTCCCACTGCCTGTTCCCCTCCCACTGATATATGACATTTCAGAAGCTGCTGGAA-CCCCAATGCATGTGAAGACGAAATGGCAGCCAGTGGGGAGCCAGGGCAGAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5893572 527 +   6154872 CATCC----CCAGATAGCTTGCTCAAAGCCATATTATGAAAATTCCTTCCTCACCTCTGC-AAACCCC--TTCTCCCCACCTTCCATTTGTTTCCTCCCTCTTCTC-TTTTCAGAGCTAGTGATAAGTAAA----GAGAGAACA-GGAACAAGACCAGTAGGGGGT-CC-----CGCTCAGTGATCCA------T-CCCTCCTGCTGGGCGCTGACATTTGACAGGTCCATTA-GAAAAAAAGACA--CT---------GGGGGGTGGAAGTGGGGAAGAATGTAGGATGAGGAAAGAA-CAGAGAGAATGA-ATAGAATGGAACTCTCAAGAAACCAGACAATTTGAGAGGTGCCTT-AAAGAGAGGCT---TGGAGCTAGGGAAAGTAAACAA-GCAGAAAGC-TGGAGAAGAAAGGAAGCTTGGGAGGA-GGGGAAA-TGGGGGAGGAAGAGCCAGCCTTGGGTCTCCCACTGCCTGTTCCCCTCCCACTGATACATGACATTTCAGAAGCTGCTGGAA-CCCCAATGCATGTGAAGACGAAATGGCAGCCAGTGGGGAGCCAGGGCAGAGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30083169 525 + 172585720 TGTCC----CCAGGCAGCTTGCTCAAAGCCATATTATGAAAATTCCTTCCTCACCTCTGC-AAACCCC--TTCTCCCCACCTTCCATTTGTTTCCTCCCTCTTCTC-TTTTCAGAGCTAGGGATAAGTAA------AGAGAACA-GGAACAAGACCAGTAGGGGGT-CC-----TGCTCAGTGATCCA------T-CCCTCCTGCTGGGCCCTGACATTTGACAGGTCCATTA-GAAACAAAGACA--CT---------GGGGGGTGGAAGTGGGGAAGAATGTAGGATGAGGAAAGAA-CAGAGAGAATGA-ATAGAATGGAACTCTCAAGAAACCAGACAATTTGAGAGGTGCCTT-AAAGAGAGGCT---TGGAGCTAGGGAAAGTAAACAA-GCAGAAAGC-TGGAGAAGAAAGGAAGCCTGGGAGGA-GGGGAAA-TGGGGGAGGAAGAGCCAGCCTTGGGTCTCCCACTGCCTGTTCCCCTCCTGCTGATATATGACATTTCAGAAGCTGCTGGAA-CCTCAGTGCCTGTGAAGACAAAATGGCAGCCAGTGGGGAGCCAGGGCAGAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29745712 525 - 170955103 TGTCC----CCAGGCAGCTTGCTCAAAGCCATATTATGAAAATTCCTTCCTCACCTCTGC-AAACCCC--TTCTCCCCACCTTCCATTTGTTTCCTCCCTCTTCTC-TTTTCAGAGCTAGGGATAAGTAA------AGAGAACA-GGAACAAGACCAGTAGGGGGT-CC-----TGCTCAGTGATCCA------T-CCCTCCTGCTGGGCCCTGACATTTGACAGGTCCATTA-GAAACAAAGACA--CT---------GGGGGGTGGAAGTGGGGAAGAATGTAGGATGAGGAAAGAA-CAGAGAGAATGA-ATAGAATGGAACTCTCAAGAAACCAGACAATTTGAGAGGTGCCTT-AAAGAGAGGCT---TGGAGCTAGGGAAAGTAAACAA-GCAGAAAGC-TGGAGAAGAAAGGAAGCCTGGGAGGA-GGGGAAA-TGGGGGAGGAAGAGCCAGCCTTGGGTCTCCCACTGCCTGTTCCCCTCCTGCTGATATATGACATTTCAGAAGCTGCTGGAA-CCTCAGTGCCTGTGAAGACAAAATGGCAGCCAGTGGGGAGCCAGGGCAGAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2794387 525 -   2996164 TGTCC----CCAGGCAGTTTGCTCAAAGCCATATTATGAAAATTCCTTCCTCACCTCTGC-AAACCCC--TTCTCCCCACCTTCCATTTGTTTCCTCCCTCTTCTC-TTTTCAGAGCTAGGGATAAGTAA------AGAGAACA-GGAACAAGACCAGTAGGGGGT-CC-----TGCTCAGTGATCCA------T-CCCTCCTGCTGGGCCCTGACATTTGACAGGTCCATTA-GAAACAAAGACA--CT---------GGGGGGTGGAAGTGGGGAAGAATGTAGGATGAGGAAAGAA-CAGAGAGAATGA-ATAGAATGGAACTCTCAAGAAACCAGACAATTTGAGAGGTGCCTT-AAAGAGAGGCT---TGGAGCTAGGGAAAGTAAACAA-GCAGAAAGC-TGGAGAAGAAAGGAAGCCTGGGAGGA-GGGGAAA-TGGGGGAGGAAGAGCCAGCCTTGGGTCTCCCACTGCCTGTTCCCCTCCTGCTGATATATGACATTTCAGAAGCTGCTGGAA-CCTCAGTGCCTGTGAAGACAAAATGGCAGCCAGTGGGGAGCCAGGGCAGAGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     545459 527 +    766320 TGTCC----CCAGGCAACTTGCTCAAAGCCATATTATGAAAATTCCTTCCTGGCCTCTGC-AAACCCC--TTCTCCCCACCTTCCATTTGTTTCCTCCCTCTTCTC-TTTTCAGAGCCAGTGGTAAGTAAA----GAGAGAACA-GGAACAAGACCAGTAGGGGGT-CC-----CGCTCAGTGATCCA------T-CCCTCCTGCTGGGCCCTGACATTTGACAGATCCATTA-GAAACAAAGACA--CT---------GGGGGGTAGAAGTGGGGAAGAATGTAGGATGAGGAAAGAA-CAGAGAGAATGA-ATAGAATGGAACTCTCAAGAAACCAGACAATTTGAGAGGTGCCTT-AAAGAGAGGCT---TGGAGCTAGGGAAAGTAAACAA-GCAGAAAGC-TGGAGAAGAAAGGAAGCCTGGGAGGA-GGGGAAA-TGGGGGAGGAAGAGCCAGCCTTGGGTCTCCCACTGCCTGTTCCCCTCCTGCTGATATATGACATTTCAGAAGCTGCTGGAA-CCTCAGTGCATGTGAAGACAAAATGGCAGCCAGTGGGGAGCCAGGGCAGAGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29001555 527 -  71996105 TGTCC----CCAGGCAGCTTGCTCAAAGCCATATTATGAAAATTCCTTCCTCACCTCTGC-AAACCCC--TTCTCCCCACCTTCCATTTGTTTCCTCCCTCTTCTC-TTTTCAGAGCTAGTGATAAGTAAA----GAGAGAGCA-GGAACAAGACCAGTAGGGGGT-CC-----CGCTCAGTGATCCA------T-CCCTCCTGCTGGGCCCTGACATTTGACAGGTCCATTA-GAAACAAAGACA--CT---------GGGGGGTGGAAGTGGGGAAGAATGTAGGATGAGGAAAGAA-CAGAGAGAATGA-ATAGAATGGAACTCTCAAGAAACCAGACAATTTGAGAGGTGCCTT-AAAGAGAGGCT---TGGAGCTAGGGAAAGTAAACAA-GCAGAAAGC-TGGAGAAGAAAGGAAGCCTGGGAGGA-GGGGAAA-TGGGGGAGGAAGAGCCAGCCTTGGGTCTCCCACTGCCTGTTCCCCTCCTGCTGATATATGACATTTCAGAAGCTGCTGGAA-CCTCAGTGCATGTGAAGACAAAATGGCAGCCAGTGGGGAGCCAGGGCAGAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     177760 527 +    290775 TGTCC----CCAGGCAACTTGCTCAAAGCCATATTATGAAAATTCCTTCCTGGCCTCTGC-AAACCCC--TTCTCCCCACCTTCCATTTGTTTCCTCCCTCTTCTC-TTTTCAGAGCCAGTGGTAAGTAAA----GAGAGAACA-GGAACAAGACCAGTAGGGGGT-CC-----CGCTCAGTGATCCA------T-CCCTCCTGCTGGGCCCTGACATTTGACAGATCCATTA-GAAACAAAGACA--CT---------GGGGGGTAGAAGTGGGGAAGAATGTAGGATGAGGAAAGAA-CAGAGAGAATGA-ATAGAATGGAACTCTCAAGAAACCAGACAATTTGAGAGGTGCCTT-AAAGAGAGGCT---TGGAGCTAGGGAAAGTAAACAA-GCAGAAAGC-TGGAGAAGAAAGGAAGCCTGGGAGGA-GGGGAAA-TGGGGGAGGAAGAGCCAGCCTTGGGTCTCCCACTGCCTGTTCCCCTCCTGCTGATATATGACATTTCAGAAGCTGCTGGAA-CCTCAGTGCATGTGAAGACAAAATGGCAGCCAGTGGGGAGCCAGGGCAGAGGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2636481 527 -   3067355 TGTCC----CCAGGCAGCTTGCTCAAAGCCATATTATGAAAATTCCTTCCTCACCTCTTC-AAACCCC--TTCTCCCCACCTTCCCTTCGTTTCCTCCCTCTTCTC-TTTTCAGAGCTAGTGATAAGTAAA----GAGAGAACA-GGAACAAGACCAGTAGGGGGT-CC-----CGCTCAGTGATCCA------T-CCCTCCTGCTGGGCCCTGACATTTGACAGGTCCATTA-GAAAAAAAGACA--CT---------GGGGGGTGGAAGTGGGGAAGAATGTAGGATGAGGAAAGAA-CAGAGAGAATGA-ATAGAATGGAACTCTCAAGAAACCAGACAATTTGAGAGGTGCCTT-AAAGAGAGGCT---TGGAGCTAGGGAAAGTAAACAA-GCAGAAAGC-TGGAGAAGAAAGGAAGCCTGGGAGGA-GGGGAAA-TGGGGGAGGAAGAGCCAGCCTTGGGTCTCCCACTGCCTGTTCCCCTCCTGCTGATATATGACATTTCAGAAGCTGCTGGAA-CCTCAGTGCATGTGAAGACAAAATGGCAGCCAGTGGGGAGCCAGGGCAGAGGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30078438 535 + 171630274 TGTCC----CCAGACAACTTGCTCAAAGCCCTATTATGAAAATTTCTTCCTCACCTCAGC-AAACCCC--TTCTCCCCACCTTCCATTAGTTTCCTCCCTCTTCTC-TTTTCAGAGCTACTGATAAGTAAA----GAGAGAACA-GGAACAAGACCAGTAGGGGGT-CC-----TGCTCAGTGATCCA------T-CCCTCCTGCTGGGTGCTGACATTTGACAGGTCCATTAGGAAAAAAAGACA--CTGG--GGGT-GGGGGTTGGAAGTGGGAAAGAATGTAGGACGAGGAAAGAA-CAGAGAGATCGA-ATAGAATGGAACTCTCAAGAAACCAGACAATTTGAGAGGTGCCTT-AAAGAGAGGCT---TGGAGCTGGGGAAAGTAAACAA-GCAGAAAGC-TAGAGAAGAAAGGAAGCCTGGGAGGAGGGGGAAA-TGGGGGAGGAAGAGCCAGCTTCGGGTCTCCCACGGCCTGTTCCCCTCCCACTGATAAATGACATTTCAAAAGCTGCTGGAA-CCCCAATACAGATGAAGACTAAATGGCAGTCAGTGGGAAGCCAGGGCAGAGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           225220 536 -    242197 AGTCC----CCAGACAACTTGCTCAAAGCCCTATTATGAAAATTCCTTCCTCACCTCGAC-AAACCCC--TTCTCCCCACCTTCCATTAGTTTCCTCCCTCTTCTC-TTTTCAGAGCTAGGGATAAGTAAA----GAGAGAACA-GGAACAAGACCAGTAGGGGGT-CC-----AGCTCAGTGATCCA------T-CCCTCCTGCTGGGTGCTGACATTTGACAGGTCCATTA-GAAAAAAAGACA--CGGGGTGGGTGGGGGGGTGGAAGTGGGAAAGAATGTAGGATGAGGAAAGAA-CAGAGAGATTGA-ATAGAATGGAACTCTCAAGAAACCAGACAATTTGAGAGGTGCCTT-AAAGAGAGGCT---TGGAGCTGGGGAAAGTAAACAA-GCAGAAAGC-TAGAGAAGAAAGGAAGCCTGGGAGGA-GGGGAAA-TGGGGGAGGAAGAGCCAGCCTCGGGTCTCCCACAGCCTGTTCCCCTCCCGCTGATATATGACATTTCAAAAGCTGCTGGAA-CCCCAATACAGATGAAGACGAAATGGCAGTCAGTGGGAAGCCAGGGCAGAGGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     218934 527 -   1771730 AGTTC----CCAGACAACTTGCTCAAAGCCCTATTATGAAAATTCCTTCCTCACCTCGGC-AAACCCC--TTCTCCCCAACTTCCATTAGTTTCCTCCCTCTTCTCTTTTTCAGAGCTAGTGATAAGTAAA----GAGAGAACA-GGAACAAGACCAGTAGGGGGT-CC-----AGCTCAGTGATCCA------T-CCCTCCTGCTGGGTGCTGACATTTGACAGGTCCATTA-GAAAAAAAGACA--CT---------GGGGGGTGGAAGTGGGAAAGAATGCGGGGTGAGGAAAGAA-CAGAGAGATTGA-ATAGAATGGAACTCTCAAGAAACCAGACAATTTGAGAGGTGCCTT-AAAGAGAGGCT---TGGAGCTGGGGAAAGTAAACAA-GCAGAAAGC-TAGAGAAGAAAGGAAGCCTGGGAGGA-GGGGAAA-TGGGGGAGGAAGAGCCAGCCTCGGGTCTCCCACGGCCTGTTCCCCTCCCGCTGATATATGACATTTCAAAAGCTGCTGGAA-CCCCAATACAGATGAAGACGAAATGGCAGTCAGTGGGAAGCCA-GGCAGAGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     300915 531 -    457564 TGTCC----CCAGACAACTTGCTCAAAGCCCTATTATGAAAATTCCTTCCTCACCTCGGC-AAACCCC--TTC-CCCCACGTTCCATTAGTTTCCTCCCTCTTCTC-TTTTCAGAGCTAGTGATAAGTAAA----GAGAGAACA-GGAACAAGACCAGTAGGGGGT-CC-----CACTCAGTGATCCA------G-CCCTCCTGCTGGGTGCTGACATTTGACAGGTCCATTA-GAAAAAAAGACA--CT----GGGC-GGGGGGTGGAAGTGGGAAAAAATGTAGGATGAGGAAAGAG-CAGAGAGATTGA-ATAGAATGGAACTCTCAAGAAACCAGACAATTTGAGAGGTGCCTTAAAAGAGAGGCT---TGGAGCTGGGGAAAGTAAACAA-GCAGAAAGC-TAGAGAAGAAAGGAAGCTTGGGAGGA-GGGGAAA-TGAGGGAGGAAAAGCCAACCTTGGGTCTCCCACGGCCTGTTCCCCTCCCGCTGATATATGACATTTCTAAAGCTGCTGGAA-CCCCAATACAGATGAAGACGAAATGGCAGTCAGTGGGAAGCCAGGGCAAAGGG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               104218 523 + 123392446 CGTCT----CAACACAGCATGCTCCAAGCCCTATTATGAAAATTCCTCCCTCACCTCTGAGCAGCTCC--CTCTCTCCACCTTCCATTAGTTTCCTCCCTCTTCTC-TTTTCAGGGTTAGCCTTAAGTAAACA-GAAGAGAATA-GGAACAAGACCACCAGGGGGT-TC-----TGTTCCG-AATCCA------TCCCCTCCTGCTGGGCACTGACATTTGGCAGGTCCATTA-GAAAAAAC---A--CT---------CAGAGGTGGAAGTGGAGAAGAACATAGGATAAGGAAACAATGGGGAAAAGTTA-GTAGAATGGAACTCTCAAGAAACCAGATGATTTTAGGGGTGCCTG-AAAAAGAGACTCCTCTGAGCTGGGGAAAGTAAACAATGCAGAAAGC-TAgagagga----ag----gagagga-ggggaag-gga-ggaggaagagCCAGCCACAGGTCTCCCACTGCCTGTTCCCCTCCTGCTGACATGTGACATTTCAGAAGCTGCTGGAG--CCCAAAGCAAGTGAAGAAGAAATGGCAGCCAGTGGGGAGCCAGGGCAGAGAG
i micMur3.chr6             I 161 I 36
s proCoq1.NW_012152574v1     598317 526 +    730504 TGTCC----CCAGACAGCATGCTCAAAGCCCTATTAAGAAAATTCCTCCCTCA-CTCTGCAAAGCTCC--CTTTCCCCACCTTCCATTTGTTTCCTCCCTCTTCTC-TTTTCAGGGCTAGCAATAAGTAAACA-AGAGAGAACA-GGAACAAGACCACCAGGGGGT-CC-----TGCTCCT-GATCCA------CCCCCTCCTGCTGGGCGCTGACATTTGACAGGTCCATTA-GAAAAAAC---A--CT---------CTGAGGTGGAAGTGGGGAAGAATGTAGGATGAGGAAAGAATGGGGGAGAATGA-GTAGAATGGAACTCTCAAGAAACCAGATGATTTTAGGGGTGCCTG-AGAAAGAGACTCCTCCGAGCTGGGGAAAGTAAACAATGCAGAAAGC-TAGAgagga-ggggg----gagagga-ggggaag-gag-ggaggaagagCCAGCCTTGGGTCTCCCACTGCCTGTTCCCCTCCTGCTGATATGTGACATTTCAGAAGCTGCTGGAG-CCCCAAAGCAAGTGAAGAAGAAATGGTAGCCAGTGGGGAGCCAGGGCAGAGGG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           112736 527 +  18854210 TATCC----CCAGACAGCTTGCTCAAAGCTGTATTATGAAAATTCCTCCCACACCTCTGC-TAACTCC--CTCTCTCCACCTTCCATTTGTTTCCTCTCTCTTCTC-TTTTCAGGGCTATGGATAAGTAAACA-AGAGAGAAAA-GGAACAGGACCACTAGGGGGTCCC-----TGTTTAGTGATCCA------TTCCTACCTGCTGGGCGCTGACATTTGACAGGTCCATTA-GAAAAAAA-AGA--CT---------CTGAGGCTTAAGTGGGG-AGAATGTAGGAAGAGGAATGAA-AAAGGAGAATGA-ATAGAATGGAACTCCCAAGAAACCAGATGATTTTAGGGATGCCTGAAAAAAGAGGCT----TGAGCTGGGGAAAGTGAACAATGAAAAACGC-TAAAGAGGAAGGAAA----GAGAGGA-GGAGGGG-AAATGGGGGAAGAGCCAGCCATGGGTCTCCCACTGCCTGTTCCCCTCCCGCTGATATGTGACATGTCAGAAGCTGCTGGAG-CCCCAAAGCAAGTGAAGAAGAAATGGCAGCCAGTGGGGAGCCAGGGCAGAGGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57933531 426 -  94987271 GATCC----CTAGGCAGCTCCCTCAATG---------------------------------AAATTTC---------CACCTTCAATT----------------TC------------------------------AGAGAACA-AGAACAAGATCAGTAGGGTGT--C-----TGCTCTGCACCCTG------TCCTTTCCTGCTGGGCCCTGACATTTGACGAGTCCATTA-GAAAAAAAAA-G--GG---------GGGAGGGGGGAGTGCAGAAGAATCTAAAATAAAAGAGATC-CAGATAAATAGACATAGAGTGGAATTCTCCACAAGCCAGATGATAGGAGAGATGCCTG-AAAGAGA-------TG--------------AAACAG----GAAAGCTTAGAGAGGGAAAGAA---TGGTAGGA-GGGAAAATTGGGGGAGGAAGGGCCAGCCGTGGGTCCCCTACTGTCTGTTCCCCTCCTGCTGAAGCATGACATTTCAGAAGCTGCTGGAGCCCCCAAAAGAAGCAGAGAAGAAATGACAGCCAGTGGGGAGTCAGAGCAGAAGG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26230556 477 +  26524999 -GTCCTGGACAGGACAGAGTCCTAAGAACCACATGATG-AAATGCCTCTCTCACC-CTAC-AAACCCC--TTCTCTCCACCTTCCATT--TTTCCTAGCTCATCTC-TCTCCTGGGCTGATGGTAAATAAACATGAAGAGAACAGGGAGCAAGACTGCCAGGGGGT-CCGGCAGGGCGCAGTGATCTGATCCTTT-CCCTCCTGCTGGGCCCTGACATTTGCTGGATCCATTA-GAAG---------------------AGGGGGCGGAGACAGGGGGGAGAGACAGGTGA-CAGAGAT-GGGGGAGAATAA-CTAGAAGGAGGCTCACCACAAACCAGATGCTTTCAGAG------T-A--------CT--------------------------GATGAGAGG-CAGGGAGGG----------GGAGGGA-AGGGATG-TGGGGG-------GCTAGCTGTGTGCGCCCCCCTGCCTGCTCCCCTCCTGCTGAAGCATGACATTTCTGGAGCTATTGGAG-CCCCAAAGGAGGCAGAGAAGAAATGGAAGCTAGCGGG-AGCCGGGGCAGAGGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            41301 474 +    102524 ATTCC----CCAAACAGCTCCCTCAAAGCCCCATTGTGACAA-------------------CAGCCCC--CTCTCCCCGCCGTCCACGC-TTCTCTCCCTCATCTC-TTTCAGGGACTAGCA-------------GAGAGAGCA-GGAACAAGAC--ACCGGGGGA-TC-----CGCTCAGCGGCCCA------GCCCCTCCTGCTGGGCGCTGACATTTAGCAGGCCCATTA-GCAAAAGAGGCACCCT---------GAGGGCTGGACCTGGGG---ACCCCAGGATGAAGAAGAAC-CTGGGAGAGTAA-ACAGGCTGGGG-GCTCAACAAGCCGGGTGATCTGAAGGGGG-CTG-AAGGCAAGGCT---TGGAGCTGGGG-CAGTAAATAATGCAGAAAGC-CAGACAGGAAAGCACCCC---------GAGGAAG-C------------GCCCGC-GTGCATCTCCCACTGCCTGTTCCCCTCCTGCTGAAACTTGACATTTTAGAAGCTGTCGGAG-CCCCAGAGGAAGTGGAGGAGAAAGGGGAGTCAGTGGGGAGCAAGGGCAGAGGG
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=85257.000000
s hg38.chr6_GL000254v2_alt   890341 8 +   4827813 GACACAGA
s panTro5.chr6             29853109 8 + 175400573 GACACAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30087478 8 + 173848474 GACACAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5894099 8 +   6154872 GACACAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30083694 8 + 172585720 GACACAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29746237 8 - 170955103 GACACAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2794912 8 -   2996164 GACACAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     545986 8 +    766320 GACACAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29002082 8 -  71996105 GACACAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     178287 8 +    290775 GACACAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2637008 8 -   3067355 GACACACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30078973 8 + 171630274 GACACAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           225756 8 -    242197 GACACAGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     219461 8 -   1771730 GACACAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     301446 8 -    457564 GACACAGA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     598843 8 +    730504 GACCCAGG
i proCoq1.NW_012152574v1   C 0 I 31
s otoGar3.GL873550           113263 6 +  18854210 GACTCA--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57933957 8 -  94987271 AACAGAGA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26231033 4 +  26524999 GACA----
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            41775 8 +    102524 GAGTCAGG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               104741 36 + 123392446 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=362026.000000
s hg38.chr6_GL000254v2_alt   890349 42 +   4827813 CAGGGGGCTCAGGGGACTAAGGAGGGTGAAAT--GTTGCCAGGA
s panTro5.chr6             29853117 41 + 175400573 C-GGGGGCTCAGGGGACTAAGGAGGGTGAAAT--GTTGCCGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30087486 41 + 173848474 C-GGGGGCTCAGGGGACTAAGGAGGGTGAAAT--GTTGCCGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5894107 42 +   6154872 CAGGGGGCTCAGGGGACTAAGGAGGGTGAAAT--GTTGCCGGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30083702 42 + 172585720 CAGGGGGCTCAGGGGACTGAGGAGGGTGAAAT--GTTGCGGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29746245 42 - 170955103 CAGGGGGCTCAGGGGACTGAGGAGGGTGAAAT--GTTGCGGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2794920 42 -   2996164 CAGGGGGCTCAGGGGACTGAGGAGGGTGAAAT--GTTGCGGGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     545994 42 +    766320 CAGGGGGCTCAGGGGACTAAGGAGGGTGAAAT--GTTGCGGGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29002090 42 -  71996105 CAGGGGGCTCAGGGGACTGAGGAGGGTGAAAT--GTTGCGGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     178295 42 +    290775 CAGGGGGCTCAGGGGACTAAGGAGGGTGAAAT--GTTGCGGGGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2637016 42 -   3067355 CAGGGGGCTCAGGGGACTGAGGAGGGTGAAAT--GTTGCGGGGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30078981 42 + 171630274 CAGGGGGCTCAGGGGACTGAGGAGGGTGAAAT--GTTGCAGGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           225764 42 -    242197 CAGGGGGCTCAGGGGACTGAGGAGGGTGAAAT--GTTGCAGGGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     219469 42 -   1771730 CAGGGGGCTCAGGGGACTGAGGAGGGTGAAAT--GTTGCAGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     301454 42 -    457564 CAGGGGGCTCAGGGGACTGAGGAGGGTGAAAT--GTTGCAGGGA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           113269 25 +  18854210 CAGGAGGCACAGGGAGCATAACAG-------------------A
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57933965 36 -  94987271 CTAGAGGCACAGGGGACTGGAGAGGGTGAACTTGGT--------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26231037  9 +  26524999 ---------GAGGGGACC--------------------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            41783 20 +    102524 ------------------TGGGAGGCTGGGAG--GCAGCC----
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               104741 36 + 123392446 I
e proCoq1.NW_012152574v1     598851 31 +    730504 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1558965.000000
s hg38.chr6_GL000254v2_alt   890391 102 +   4827813 GGGGAGGATAAGTAGAAAGGAAAT--AAAGAAAGCA-CTCTGGAGCCTGCTTACCTCCCACTGAGGCCTGACATTTGGGACACGGTGGGAAGTTGGAGAAGGGGG
s panTro5.chr6             29853158 102 + 175400573 GGGGAGGATAAGTAGAAAGGAAAT--AAAGAAAGCA-CTCTGGAGCCTGCTTCCCTCCCACTGAGGCCTGACATTTGGGACACGGTGGGAAGTTGGAGAAGGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30087527 102 + 173848474 GGGGAGGATAAGTAGAAAGGAAAT--AAAGAAAGCA-CTCTGGAGCCTGCTTCCCTCCCACTGAGGCCTGACATTTGGGACACGGTGGGAAGTTGGAGAAGGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5894149 102 +   6154872 GGGGAGGATAAGTAGAAAGGAAGT--AAAGAAATCA-CTCTGGAGCCTGCTTACCTCCCACTGAGGCCTGACATTTGGGACACGGTGGGAAGTTGGAGAAGGGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30083744 102 + 172585720 GGAGAGGATAAGTAGAAAGGAAAT--AAAGAAAGCA-CTCTGGAGCCTGCTTACCTCCCACTGAGGCCTGACATTTGGGACACGGTGGGAAGTTGGAGAAGGGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29746287 102 - 170955103 GGAGAGGATAAGTAGAAAGGAAAT--AAAGAAAGCA-CTCTGGAGCCTGCTTACCTCCCACTGAGGCCTGACATTTGGGACACGGTGGGAAGTTGGAGAAGGGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2794962 102 -   2996164 GGAGAGGATAAGTAGAAAGGAAAT--AAAGAAAGCA-CTCTGGAGCCTGCTTACCTCCCACTGAGGCCTGACATTTGGGACACGGTGGGAAGTTGGAGAAGGGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     546036 102 +    766320 GGAGTGGATAAGTAGAAAGGAAAT--AAAGAAAGCA-CTCTGGAGCCTGCTTACCTCCCACTGAGGCCTGACATTTGGGACACGGTGGGAAGTTGGAGAAGGGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29002132 102 -  71996105 GGAGAGGATAAGTAGAAAGGAAAT--AAAGAAAGCA-CTCTGGAGCCTGCTTACCTCCCACTGAGGCCTGACATTTGGGACACGGTGGGAAGTTGCAGAAGGGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     178337 102 +    290775 GGAGTGGATAAGTAGAAAGGAAAT--AAAGAAAGCA-CTCTGGAGCCTGCTTACCTCCCACTGAGGCCTGACATTTGGGACACGGTGGGAAGTTGGAGAAGGGGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2637058 102 -   3067355 GGAGAGGATAAGTAGAAAGGAAAT--AAAGAAAGCA-CTCTGGAGCCTGCTTACCTCCCACTGAGGCCTGACATTTGGGACACGGTGGGAAGTTGGAGAAGGGGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30079023 104 + 171630274 GGGGAGGACAAGTAGAAAGGAAATAAAAAGAAAGCA-CTCCGGAGCCTGCTTACCTCCCACTGAGGCCTGACATTTGGGACACGGTGGGAAGTTGGAGAAGGGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           225806 102 -    242197 GGGGAGGGCAAGTAGGAAGGAAAT--AAAGAAAGCA-CTCTGGAGCCTGCTTACCTCCCACTGAGGCCTGACATTTGGGACACGATGGGAAGTTGGAGAAGGGGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     219511 102 -   1771730 GGGGAGGACAAGTAGGAAGGAAAT--AAAGAAAGCA-CTCTGGAGCCTGCTTACCTCCCACTGAGGCCTGACATTTGGGACACGGTGGGAAGTTGGAGAAGGGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     301496 102 -    457564 GGGGAGGATAAGTAGAAAGGAAAT--GAAGAAAGCA-CTCTGGAGCCTGCTTACCTCCCACTGAGGCCTGACATTTGGGACACGGTCGGAAGTTGGAGAAGGGGG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               104777  99 + 123392446 GGGAGGGGCAGGTAGAAAGGAAAT--AAAGAAGGC--CCCCAGAGCCTGCTCACCTCCCATGGTGGCCTGACATTTGGGACAC--TGGGAAGCTGGAGAAGGGGA
i micMur3.chr6             I 36 I 33
s proCoq1.NW_012152574v1     598882 100 +    730504 -GAGGAGGCGGGCAGAAAGGAAAT--AAAGAAAGC--CCCCAGAGCCTGCTCTCCTCCCCTTGAGGCCTGACATTTGGGACACTGTGGGGAGCTGGAGAAGGGGG
i proCoq1.NW_012152574v1   I 31 C 0
s otoGar3.GL873550           113295 101 +  18854210 GGGCGGGGCAGGTAGAAAGGAAAT--AAAGAAAAC--CCCCAGAGCCTGCTTACCTCCCACTGGGGCCTGACATTTGGGCCACTGTGGGAAGTTGGAGAAGGGAG
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57934001  98 -  94987271 GGAGGGGGT---TAGAAAGAAAAT--AAAGAAGGTA--TCTGGAGTCTGCTTGCTCCCCACTGAGGCCTGACATTTGAGACACTGTGGGGAATTGGAGACAAGAA
i mm10.chr17               C 0 I 8
s canFam3.chr35            26231046  90 +  26524999 ---GGGGCTGGGTAGGGAGGGAAG--GAGGAAGGCCCCCCCAGAGCCTTCTCACCTCCTGCCAAGGCCTGACATTTGAGACATCA-GGGAAGTTGG---------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            41803 100 +    102524 TGGGGGGGCAAGCAGAAGGGAAGC--AGCGGAGCC--CCCTGGGGCCTGCTCACTTCCCACGGAGGCCTGACATTTGGGACACTGC-AGAAGTTGGAGAACGGGG
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=175397.000000
s hg38.chr6_GL000254v2_alt   890493 15 +   4827813 AGCCAGGGGAAGCTG
s panTro5.chr6             29853260 15 + 175400573 AGCCAGGGGAAGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30087629 15 + 173848474 AGCCAGGGGAAGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5894251 15 +   6154872 AGCCAGGGGAATCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30083846 15 + 172585720 AAACAGGGGAAGCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29746389 15 - 170955103 AAACAGGGGAAGCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2795064 15 -   2996164 AAACAGGGGAAGCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     546138 15 +    766320 AAACAGGGGAAGCTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29002234 15 -  71996105 AAACAGGGGAAGCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     178439 15 +    290775 AAACAGGGGAAGCTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2637160 15 -   3067355 AAACTGGGGAAGCTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30079127 15 + 171630274 AGCCAGGGGAAGCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           225908 15 -    242197 AGCCAGGGGAAGCTG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     219613 15 -   1771730 AACCAGAGGAAGCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     301598 15 -    457564 AGCCAGGGGAAGCTG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     598982 15 +    730504 AGCCAGGGGAAGCTG
i proCoq1.NW_012152574v1   C 0 I 49
s otoGar3.GL873550           113396 13 +  18854210 AAC--AGGGAAGCTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57934107 15 -  94987271 AGCCAGGGGGAGCTG
i mm10.chr17               I 8 C 0
s canFam3.chr35            26231136 14 +  26524999 -GCCAGGAGAGCCAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            41903 10 +    102524 AGGCGGGGGA-----
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               104876 33 + 123392446 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=227182.000000
s hg38.chr6_GL000254v2_alt   890508 30 +   4827813 TTGGA--ATCTGA---------------------AGAACCAGCAGTCACTGAG
s panTro5.chr6             29853275 30 + 175400573 TTGGA--ATCTGA---------------------AGAACCAGCACTCACTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30087644 30 + 173848474 TTGGA--ATCTGA---------------------AGAACCAGCACTCACTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5894266 30 +   6154872 TTGGA--ATCTGA---------------------AGAACCAGCACTCACTGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30083861 30 + 172585720 TTGGA--ATCTGA---------------------AGAACCAGCACTCACTGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29746404 30 - 170955103 TTGGA--ATCTGA---------------------AGAACCAGCACTCACTGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2795079 30 -   2996164 TTGGA--ATCTGA---------------------AGAACCAGCACTCACTGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     546153 30 +    766320 TTGGA--ATCTGA---------------------AGAACCAGCACTCACTGAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29002249 30 -  71996105 TTGGA--ATCTGA---------------------AGAGCCAGCACTCACTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     178454 30 +    290775 TTGGA--ATCTGA---------------------AGAACCAGCACTCACTGAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2637175 30 -   3067355 TTGGA--ATCTGA---------------------AGAACCAGCACTCACTGAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30079142 29 + 171630274 TTGGA--ATCTGA---------------------AGAACC-GCACTCACTGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           225923 29 -    242197 CTGGA--ATCTGA---------------------AGAACC-ACACTCACTGGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     219628 29 -   1771730 TTGGA--ATCTGA---------------------AGAACC-GCACTCACTGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     301613 29 -    457564 TTGAA--ATCTGA---------------------AGAACT-GCACTCACTGGG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           113409 21 +  18854210 -----------GC---------------------AGAACCAACACTCACTCTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57934122 50 -  94987271 -GCAA--ATCTGAGCACCCAAAAAAAAAAAACCCAAAACAAACAAACAAAAAA
i mm10.chr17               C 0 I 12
s canFam3.chr35            26231150 19 +  26524999 GTGGG--GCAGGA---------------------AGACCGAG-----------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            41913 20 +    102524 TCGGATGACCTGA---------------------GAAGCAG------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               104876 33 + 123392446 I
e proCoq1.NW_012152574v1     598997 49 +    730504 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=280457.000000
s hg38.chr6_GL000254v2_alt   890538 32 +   4827813 AATTCTCTGTTGCCCACCCTACCCTCACTCTG
s panTro5.chr6             29853305 32 + 175400573 AATTCTCTGTTGCCCACCCTACCCTCACTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30087674 32 + 173848474 AATTCTCTGTTGCCCACCCTACCCTCACTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5894296 32 +   6154872 AATTCTCTGTTGCCCACCCTACCCTCAGTCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30083891 30 + 172585720 AA--CTCTGTTGCCCACCCTACCCTCACCCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29746434 30 - 170955103 AA--CTCTGTTGCCCACCCTACCCTCACCCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2795109 30 -   2996164 AA--CTCTGTTGCCCACCCTACCCTCACCCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     546183 30 +    766320 AA--CTCTGTTGCCCACCCTACCCTCACCCTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29002279 30 -  71996105 AA--CTCTGTTGCCCACCCTACCCTCACCCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     178484 30 +    290775 AA--CTCTGTTGCCCACCCTACCCTCACCCTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2637205 30 -   3067355 AA--CTCTGTTGCCCACCCTACCCTCACCCTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30079171 32 + 171630274 AACTCTCTGCTGCCCGCCCTACCCTCTGCCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           225952 32 -    242197 AACTCTGTGCTGCCCACCCTGCCCTCCGCCTG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     219657 32 -   1771730 AACTCTCTGCTGCCCACCCTACCCTCTGCCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     301642 32 -    457564 AACTCTCTGCTGCCCACCCTACCCTCCGCCTG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               104909 29 + 123392446 AACTCTCTGCCGCCCACCCACCCTGCACT---
i micMur3.chr6             I 33 C 0
s otoGar3.GL873550           113430 32 +  18854210 AACTCTCTGCTGCCCACCCCACCCTCACCCCC
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57934184 30 -  94987271 AA--CACGGCTGCCTGCTCTGCTCTCCACCCT
i mm10.chr17               I 12 C 0
s canFam3.chr35            26231169 14 +  26524999 -----------------GCTCCCATCCCCCT-
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            41933 16 +    102524 ----CCCTCCCGCCCGCCCC------------
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     598997 49 +    730504 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=590106.000000
s hg38.chr6_GL000254v2_alt   890570 49 +   4827813 GCCAAGGGCAGTGCTCAACAACA---TTG-GAAGGTTTTCTCTTTATGCCTCC
s panTro5.chr6             29853337 49 + 175400573 GCCAAGGGCAGTGCTCAACAACA---TTG-GAAGGTTTTCTCTTTATGCCTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30087706 49 + 173848474 GCCAAGGGCAGTGCTCAACAACA---TTG-GAAGGTTTTCTCTTTATGCCTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5894328 49 +   6154872 GCCAAGGGCAGTGCTCAACAACA---TTG-GAAGGTTTTCTCTTTATGCCTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30083921 49 + 172585720 GCCAAGGGCAGTGTTCAACAACA---TTA-GAAGGTTTTCTCTTTATGCCTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29746464 49 - 170955103 GCCAAGGGCAGTGTTCAACAACA---TTA-GAAGGTTTTCTCTTTATGCCTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2795139 49 -   2996164 GCCAAGGGCAGTGTTCAACAACA---TTA-GAAGGTTTTCTCTTTATGCCTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     546213 49 +    766320 GCCAAGGGCAGTGTTCAACAACA---TTA-GAAGGTTTTCTCTTTATGCCTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29002309 49 -  71996105 GCCAAGGGCAGTGTTCAACAACA---TTA-GAAGGTTTTCTCTTTATGCCTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     178514 49 +    290775 GCCAAGGGCAGTGTTCAACAACA---TTA-GAAGGTTTTCTCTTTATGCCTCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2637235 49 -   3067355 GCCAAGGGCAGTGTTCAACAACA---TTG-GAAGGTTTTCTCTTTATGCCTCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30079203 49 + 171630274 GCCAAGGGCAGTGCTCAACGACG---TTG-GAATGTTTTCTCTGTATGCCTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           225984 48 -    242197 GCCAAGGGCAGTGCTCAACAACA---TT--GAATGTTTTCTCTGTATGCCTTC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     219689 49 -   1771730 GCCAAGGGCAGTGCCCAACAACA---TTG-GAATGTTTTCTCTGTATGCCTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     301674 49 -    457564 GCCAAGGGCAGTGCTCAACAACA---TTG-GAATGTTTTCTCTGTATGCCTCC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               104938 49 + 123392446 GCCAAGGGCAGAGCGCAACAGCA---TCATGCAGG-TTTCTCCTTATGCCTCC
i micMur3.chr6             C 0 I 27
s proCoq1.NW_012152574v1     599046 50 +    730504 GCTAAGGGCAGTGCTCAACTGCA---TTTTGCAGGTTTTCTCTTTATGCCTCT
i proCoq1.NW_012152574v1   I 49 C 0
s otoGar3.GL873550           113463 50 +  18854210 GCCAAGGGCAGTGCTCAACAACA---TTCTGAAGGTTTTCTCTTTATCCCTCC
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57934214 41 -  94987271 GCCAAGGGCAGGGCTCACCTGTAGGTTTG-GAA-----------CCTGCTTCC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26231183 34 +  26524999 GCTAAGAG--GTGTT-----------TCT-GAAGG----CTCTTCGCCCTTC-
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            41949 28 +    102524 ---------------------CC---TAA-GGCGGTGCTCCCTTTGTCCCTGC
i dasNov3.JH582591         C 0 C 0
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=269012.000000
s hg38.chr6_GL000254v2_alt   890619 31 +   4827813 CACTAGG-------GCAACT-------TTGTAAATCTTTACCATT
s panTro5.chr6             29853386 31 + 175400573 CACTAGG-------GCAACT-------TTGTAAATCTTTACCATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30087755 31 + 173848474 CACTAGG-------GCAACT-------TTGTAAATCTTTACCATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5894377 31 +   6154872 CACTAGG-------GCAACT-------TTGTAAATCTTTACCATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30083970 31 + 172585720 CACTAAG-------GCAACT-------TTGTGAATCTTTACCATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29746513 31 - 170955103 CACTAAG-------GCAACT-------TTGTGAATCTTTACCATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2795188 31 -   2996164 CACTAAG-------GCAACT-------TTGTGAATCTTTACCATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     546262 31 +    766320 CACTAAG-------GCAACT-------TTGTGAATCTTTACCATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29002358 31 -  71996105 CACTAAG-------GCAACT-------TTGTGAATCTTTACCATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     178563 31 +    290775 CACTAAG-------GCAACT-------TTGTGAATCTTTACCATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2637284 31 -   3067355 CACTAAG-------GCAACT-------TTGCAAATCTTTACCATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30079252 31 + 171630274 CATTAAG-------GCATCT-------TTGTAAATATTTACTATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           226032 31 -    242197 CATTAAG-------GCATCT-------TTGTAAATCTTTGCTATT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     219738 31 -   1771730 CATTAAG-------GCATCT-------TTGTAAATCTTTACTATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     301723 31 -    457564 CATGAAG-------GCATCT-------TTGTAAATCTTTACTATT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     599096 21 +    730504 CAC------------------------TTGTGCCTCTCTGCATTT
i proCoq1.NW_012152574v1   C 0 I 7
s otoGar3.GL873550           113513 21 +  18854210 CAC------------------------TTGTACATCTTTACCCTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57934255 45 -  94987271 TACTCAGCTTCTTTACAATTATTATTGTTATTATTTTTTACCATT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26231217 31 +  26524999 CACTCAG-------ACTCCT-------GCAGGCATCTGTGCCATT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            41977 26 +    102524 -----------TCGGCATCT-------CTG-ATAGCAATACCATT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               104987 27 + 123392446 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=942597.000000
s hg38.chr6_GL000254v2_alt   890650 67 +   4827813 CTCAGGACCCACCTTCCTGCACTCTCCCCACATCTATTACTCCAGATCCTGCTCCCAGCTTCTCCCA
s panTro5.chr6             29853417 67 + 175400573 CTCAGGACCCACCTTCCTGCACTCTCCCCACATCTATTACTCCAGATCCTGCTCCCAGCTTCTCCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30087786 67 + 173848474 CTCAGGACCCACCTTCCTGCACTCTCCCCACATCTATTACTCCAGATCCTGCTCCCAGCTTCTCCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5894408 67 +   6154872 CTCAGGACCCACCTTCCTGCACTCTCCCCACATCTATTACTCCAGATCCTGCTCCCAGCTTCTCCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30084001 67 + 172585720 CTCAGGACCCACCTTCCTGCACTCTCCCCACATCTATTACTCCAGATCCTGCTCCCAGCTTCTCCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29746544 67 - 170955103 CTCAGGACCCACCTTCCTGCACTCTCCCCACATCTATTACTCCAGATCCTGCTCCCAGCTTCTCCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2795219 67 -   2996164 CTCAGGACCCACCTTCCTGCACTCTCCCCACATCTATTACTCCAGATCCTGCTCCCAGCTTCTCCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     546293 67 +    766320 CTCAGGACCCACCTTCCTGCATTCTCCCCACATCTATTATTCCAGATCCTGCTCCCAGCTTCTCCCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29002389 67 -  71996105 CTCAGGACCCACCTTCCTGCACTCTCCCCACATCTATTACTCCAGATCCTGCTCCCAGCTTCTCCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     178594 67 +    290775 CTCAGGACCCACCTTCCTGCATTCTCCCCACATCTATTATTCCAGATCCTGCTCCCAGCTTCTCCCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2637315 67 -   3067355 CTCAGGACCCACCTTCCTGCACTCTCCCCACATTTATTACTCCAGATCCTGCTCCCAGCTTCTCCTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30079283 67 + 171630274 CTCAGGACCCATCTTCCTGCACTCTCCCCACATCTATGACTCCAGATCCTGCTCCCAGCTTCTCCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           226063 67 -    242197 CTCAGGACCCACCTTCCTGCACTCTCCCCACATCTATTACTCCAGATCCTGCTTCTAGCTTCTCCCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     219769 67 -   1771730 CTCAGGACCCACCTTCCTGCACTCTCCCCACATCTATTACTCCAGATCCTGCTTCCAGCTTCTCCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     301754 67 -    457564 CTCAGGACCCATCTTCCTGCACTCTCCCCACATCTATTACTCCAGATCCTGCTCCCAGCTTCTCCCA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               105014 65 + 123392446 CTCAGGCCCCGCCTTCCC-CGCCCTCCCAGCATCTAGTACTCCAGATCCTG-TCCCAGCTTCTCCCA
i micMur3.chr6             I 27 C 0
s proCoq1.NW_012152574v1     599124 66 +    730504 CTCAGGTCCCACCTTCCCTCGCTCTCCCAGCATCTAGTACTCCAGATCCTG-CCCCAGCTTCTCCCA
i proCoq1.NW_012152574v1   I 7 C 0
s otoGar3.GL873550           113534 67 +  18854210 CTCAGGTCCCACCTTCCTGCACTCTCCCAGCATCAGTTACTCCAGATCCTGCCCCCAGCTTCTACCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57934300 48 -  94987271 AGTGGGTCCTCCCTGACT-------------------TAGAACAGATGCTGACCCCAGCTTCTCCTG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26231248 64 +  26524999 CTCAGG-CTCACCCTCTCTCACACTTCTAGCA--GAGTACCCCAGATCTCACCTCAGCTCTCCCCAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            42003 62 +    102524 CTCA-GACCCCCTTCCCTGCACTCTCTCGGCACCTCTT--CCCAGG--CTGCCCCCAGCTTTGCCCA
i dasNov3.JH582591         C 0 I 4990
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1725081.000000
s hg38.chr6_GL000254v2_alt   890717 146 +   4827813 CA--GCCCCT---CAGTGCCCCTC-CACTT---CTCTAAAGACAGGG-TTAATAGGAACAATGAGGACATACAAGAACATATAAGATACATATCAACAGGGC-----------AAGGCATGCC-CCC-------CATT--TTGTTTCCTGATTTCTTATCTACCTTTTCTTGCAACC
s panTro5.chr6             29853484 146 + 175400573 CA--GCCCCT---CAGTGCCCCTC-CACTT---CTCTAAAGACAGGG-TTAATAGGAACAATGAGGACATACAAGAACATATAAGATACATATCAACAGGGC-----------AAGGCATGCC-CCC-------CATT--TTGTTTCCTGATTTCTTATCTACCTTTTCTTGCAACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30087853 146 + 173848474 CA--GCCCCT---CAGTGCCCCTC-CACTT---CTCTAAAGACAGGG-TTAATAGGAACAATGAGGACATACAAGAACATATAAGATACATATCAACAGGGC-----------AAGGCATGCC-CCC-------CATT--TTGTTTCCTGATTTCTTATCTACCTTTTCTTGCAACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5894475 146 +   6154872 CA--GCCCCT---CACTGCCCCTC-CACTT---CTCTAAAGACAGGG-TTAATAGGAACAATGAGGACATACAAGAACATATAAGATACATATCAACAGGGC-----------AAGGCATGCC-CCC-------CATT--TTGTTTCCTGATTTCTTATCTACCTTTCCTTGCAACC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30084068 149 + 172585720 CA--GCCCCT---CGGTGCCCCTC-CACTTCTCCTCTAAAGACAGGG-TTAATAGGAATAATGAGGACATACAAGAACATATAAGATACATATCAACAGGGC-----------AATGCATGCC-CCC-------CATT--TTGTTTCCTGATTTCTTATCTACCTTTTCTTGCAACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29746611 149 - 170955103 CA--GCCCCT---CGGTGCCCCTC-CACTTCTCCTCTAAAGACAGGG-TTAATAGGAATAATGAGGACATACAAGAACATATAAGATACATATCAACAGGGC-----------AATGCATGCC-CCC-------CATT--TTGTTTCCTGATTTCTTATCTACCTTTTCTTGCAACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2795286 149 -   2996164 CA--GCCCCT---CGGTGCCCCTC-CACTTCTCCTCTAAAGACAGGG-TTAATAGGAATAATGAGGACATACAAGAACATGTAAGATACATATCAACAGGGC-----------AATGCATGCC-CCC-------CATT--TTGTTTCCTGATTTCTTATCTACCTTTTCTTGCAACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     546360 149 +    766320 CA--GCCCCT---CGGTGCCCCTC-CACTTCTCCTCTAAAGACAGGG-TTAATAGGAATAATGAGGACATACAAGAACATATAAGATACATATCAACAGGGC-----------AATGCATGCC-CCC-------CATT--TTGTTTCCTGATTTCTTATCTACCTTTTCTTGCAACC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29002456 149 -  71996105 CA--GCCCCT---CGGTGCCCCTC-CACTTCTCCTCTAAAGACAGGG-TTAATAGGAATAATGAGGACATACAAGAACATATAAGATACATATCAACAGGGC-----------AATGCATGCC-CCC-------CATT--TTGTTTCCTGATTTCTTATCTACCTTTTCTTGCAACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     178661 149 +    290775 CA--GCCCCT---CGGTGCCCCTC-CACTTCTCCTCTAAAGACAGGG-TTAACAGGAATAATGAGGACATACAAGAACATATAAGATACATATCAACAGGGC-----------AATGCATGCC-CCC-------CATT--TTGTTTCCTGATTTCTTATCTACCTTTTCTTGCAACC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2637382 149 -   3067355 CA--GCCCCT---CGGTGCCCCTC-CACTTCTCCTCTAAAGACAGGG-TTAATAGGAATAATGAGGACATACAAGAACATATAAGATACATATCAACAGGGC-----------AATGCATGCC-CCC-------CATT--TTGTTTCCTGATTTCTTATCTACCTTTTCTTGCAACC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30079350 148 + 171630274 CA--GCCCCT---CAGTGGCCCTC-CACTTCTCCTCTAAAGGCAGGG-TTAATGGGAACAATGAAGACATACAAGAACATGTAAGATACATATCAACAGGGC-----------AATGCATG-C-CCC-------CATT--TTGTTTCCTCCTTTCTTACCTATCTTTTCTTGCAACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           226130 149 -    242197 CA--GCCCCT---CAGTGCCCCTC-CACTTCTCCTCTAAAGGCAGGG-TTAATGGAAACAATGAGGTCATACAAGAACATGTAAGATACATATCAACAGGGC-----------AATGCATGCC-CCC-------CATT--TTGTTTCCTCACTTCTTATCTACCTTTTCTTGCAACC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     219836 149 -   1771730 TA--GCCCCT---CGGTGCCCCTC-CACTTCTCCTCTAAAGGCAAGG-TTAATGGAAACAATGAGGACATACAAGAACATGTAAGATACATATCAACAGGGC-----------AATGCATGCC-CCC-------CATT--TTGTTTCCTCACTTCTTATCTCCTTTTTCTTGCAACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     301821 149 -    457564 CA--GCCCCT---CGGTGCCCCTC-CACTTCTCCTCTAAAGGCAGGG-TTCATGGGAACAATGAGGACATACAAGAACATGTAAGATACATATCAACAGGGC-----------AATGCATGCC-CCC-------CATT--TTGTTTCCTCATTTCTTATCTACCTTTTCTTGCAACC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               105079 154 + 123392446 AG--GCCCCT---CCATGTCCCTC-CACTGTTCACCTAAAGAAAAGG-TTAATGGGAACAATGAGGACGTGCAAGAACATACAAGACATGTATAAACAGGGC-----------AGTG--TGTA-CCCAACATCTCTTT--TTGTTTCCTAATTTCTTCTCTACCTTTTCCTGCGACC
i micMur3.chr6             C 0 I 50
s proCoq1.NW_012152574v1     599190 156 +    730504 GG--GACCCT---CCATGCCCCTC-CACTGCTCACCTAAAGAAAAGG-TTAATGGGAACAATGAGGACGTGCAAGAACATACAAGACACATATAAACAGAGC-----------AATGTCTGTC-CCCAGCGTCTCTTC--TTGTTTCCTCATTTCTTCTCTACCTTTTCCTACAACC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           113601 146 +  18854210 AGCCGCCCCTGCCCCATGCCCCACTCACTTCTCATCTACAGAAAAGG-TTAACAGGAACAATGAGGACATATAAG-------------------AACAGGGC-----------AAAGTATGCCACCCAACATCTCTTCTTTTATTCCCTCATTTCTTCTCTACCTTTTCTTACAATC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57934348 156 -  94987271 AA--TCCTGA---AAGTGTCCCTC-CACTGTTTGTCTGAAGAAAGGATTTCACAGGAACAATCAGGATACTCGGAAACCTAC-AGTTACATA-AAACAGGGCCTGTGTGGCCTAATGTGTGCA-CCA-------TCTT--CTGCTTC---ATCTCTTCTCTACCTGCTCTTACAAAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26231312  87 +  26524999 CA--GCCCCA---------------C--------------GGAAAGG-CTGACAGGACCTAGGTGGACACTGA-----------------CACCGACAGGGC-----------GA---------CCT-------------TGGTTTTCTCATCACCCCCCCCCCCCATC--------
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            42065 4990 +    102524 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=561473.000000
s hg38.chr6_GL000254v2_alt   890863 50 +   4827813 GTTTCCCTCTTCCACACACTATTCATCACTGCAGATTCTCTCCACCACGT
s panTro5.chr6             29853630 50 + 175400573 CTTTCCCTCTTCCACACACTATTCATCACTGCAGATTCTCTCCACCACGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30087999 50 + 173848474 CTTTCCCTCTTCCACACACTATTCATCACTGCAGATTCTCTCCACCACGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5894621 50 +   6154872 CTTTCCCTCTTCCACACACTATTCATCACTGCAGATTCTCTCCACCACGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30084217 50 + 172585720 CTTTCCCTCTTCCACACACTGTTCATCACTGCAGATTCTCTCCACCACGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29746760 50 - 170955103 CTTTCCCTCTTCCACACACTGTTCATCACTGCAGATTCTCTCCACCACGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2795435 50 -   2996164 CTTTCCCTCTTCCACACACTGTTCATCACTGCAGATTCTCTCCACCACGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     546509 50 +    766320 CTTTCCCTCTTCCACACACTGTTCATCACTGCAGATTCTCTCCACCACGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29002605 50 -  71996105 CTTTCCCTCTTCCACACACTGTTCATCACTGCAGATTCTCTCCACCACGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     178810 50 +    290775 CTTTCCCTCTTCCACACACTGTTCATCACTGCAGATTCTCTCCACCACGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2637531 50 -   3067355 CTTTCCCTCTTCCACACACTGTTCATCACTGCAGATTCTCTCCACCACGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30079498 50 + 171630274 CTTTCCCTCTTCCACACTCTATTCATCACTGCAGATTCTCTCCACCACGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           226279 50 -    242197 CTTTTCCTCTTCCACACCCTATTCATCACTGCAGATTCTCTCCACCACGT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     219985 50 -   1771730 CTTTCCCTCTTCCACACCCTATTCATCACTGCAGATTCTCTCCACCACGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     301970 50 -    457564 CTTTCCCTCTTCCACACCCTATTCATCACTGCAGATTCTCTCCACCACGT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     599346 38 +    730504 --CTCCCCCTTCCACACCCTATTCCCCACTGCAGATTCTC----------
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           113747 50 +  18854210 CTTTCCATCTTCCACACCCTGTTCTCCACTGAGGGTTCCCTCCACCATGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57934504 31 -  94987271 --------ACCCCACACGCAACC-----------ATTTACCCCAACCCGT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26231399 44 +  26524999 CCTTCTCTCTTGCAC---TGGTCCCTCCATACAGATCCCTTCCTTGG---
i canFam3.chr35            C 0 C 0
e micMur3.chr6               105233 50 + 123392446 I
e dasNov3.JH582591            42065 4990 +    102524 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=28971.000000
s hg38.chr6_GL000254v2_alt   890913 2 +   4827813 GA
s panTro5.chr6             29853680 2 + 175400573 GA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30088049 2 + 173848474 GA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5894671 2 +   6154872 GA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30084267 2 + 172585720 GA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29746810 2 - 170955103 GA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2795485 2 -   2996164 GA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     546559 2 +    766320 GA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29002655 2 -  71996105 GA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     178860 2 +    290775 GA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2637581 2 -   3067355 GA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30079548 2 + 171630274 GA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           226329 2 -    242197 GA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     220035 2 -   1771730 GA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     302020 2 -    457564 GA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               105283 2 + 123392446 GA
i micMur3.chr6             I 50 C 0
s otoGar3.GL873550           113797 2 +  18854210 GA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57934535 2 -  94987271 GA
i mm10.chr17               C 0 I 69
s canFam3.chr35            26231443 2 +  26524999 GC
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            42065 4990 +    102524 I
e proCoq1.NW_012152574v1     599384 0 +    730504 C
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1611111.000000
s hg38.chr6_GL000254v2_alt   890915 135 +   4827813 TTCTC-TCCCCCTCCCCAATAGATTTC--CTTAG-TTCTCCTCCCTCT-CTTTGCTCTTGCAAGGATCTGGATTTGCAGGCAGGAAACCGACTCATTCCAATTGACACATTCTGGTTCTTCTGCCTTCCCATCCCACCCC
s panTro5.chr6             29853682 136 + 175400573 TTCTT-TCCCCCTCCCCAATAGATTTC--CTTAGAGTCTCCTCCCTCT-CTTTGCTCTTGCAAGGATCTGGATTTGCAGGCAGGAAACCGACTCATTCCAATTGACACATTCTGGTTCTTCTGCCTTCCCATCCCACCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30088051 136 + 173848474 TTCTT-TCCCCCTCCCCAATAGATTTC--CTTAGAGTCTCCTCCCTCT-CTTTCCTCTTGCAAGGATCTGGATTTGCAGGCAGGAAACCGACTCATTCCAATTGACACATTCTGGTTCTTCTGCCTTCCCATCCCACCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5894673 135 +   6154872 TTCTC-TCCCCCTCCCCAACAGATTTC--CTTAG-TTCTCCTCCCTCT-CTTTGCTCTTGCAAGGATCTGGATTTGCAGGCAGGAAACCGACTCATTCCAATTGACACATTCTGGTTCTTCTGCCTTCCCATCCCACCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30084269 135 + 172585720 TTCTC-TCCCCCTCCCCAATAGACTTC--CTTAG-TTCTCCTCCCTCT-CTTTGCTCTTGCAATGATCTGGATTTGCAGGCAGGAAACCGACTCATTCCAGTTGACACATTCCGGTTCCTCTGCCTTCCCATCCAACCCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29746812 135 - 170955103 TTCTC-TCCCCCTCCCCAATAGACTTC--CTTAG-TTCTCCTCCCTCT-CTTTGCTCTTGCAATGATCTGGATTTGCAGGCAGGAAACCGACTCATTCCAGTTGACACATTCCGGTTCCTCTGCCTTCCCATCCAACCCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2795487 135 -   2996164 TTCTC-TCCCCCTTCCCAATAGACTTC--CTTAG-TTCTCCTCCCTCT-CTTTGCTCTTGCAATGATCTGGATTTGCAGGCAGGAAACCGACTCATTCCAGTTGACACATTCCGGTTCCTCTGCCTTCCCATCCAACCCG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     546561 135 +    766320 TTCTC-TCCCCCTCCCCAATAGACTTC--CTTAG-TTCTCCTCCCTCT-CTTTGCTCTTGCAATGATCTGGATTTGCAGGCAGGAAACCGACTCATTCCAGTTGACACATTCCGGTTCCTCTGCCTTCCCATCCAACCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29002657 135 -  71996105 TTCTC-TCCCCCTCCCCAGTAGACTTC--CTTAG-TTCTCCTCCCTCT-TTTTGCTCTTGCAATGATCTGGATTTGCAGGCAGGAAACCGACTCATTCCAGTTGACACATTCCGGTTCCTCTGCCTTCCCATCCAACCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     178862 135 +    290775 TTCTC-TCCCCCTCCCCAATAGACTTC--CTTAG-TTCTCCTCCCTCT-CTTTGCTCTTGCAATGATCTGGATTTGCAGGCAGGAAACCGACTCATTCCAGTTGACACATTCCGGTTCCTCTGCCTTCCCATCCAACCCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2637583 135 -   3067355 TTCTC-TCCCCCTCCCCAATAGACTTC--CTTAG-TTCTCCTCCCTCT-CTTTGCTCTTGCAATGATCTGGATTTGCAGGCAGGAAACCGACTTATTCCAGTTGACACATTCCGGTTCCTCTGCCTTCCCATCCAACCCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30079550 135 + 171630274 TTCTC-TCCCCCTCCCCAGTAGACTTC--CTTAG-TTCTCCTCCCTCT-GTTTGCTCTTGTAAGGATCTGGACTTGCAGGCAGGAAACCGACTCATTCCAGTTGACACATTCCGGTTCCTCTGCCTTCCCATCCCACCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           226331 135 -    242197 TTCTC-TCCCCCTCCCCAGTAGACTTC--CTTAG-TTCTCCTCCCTCT-GTTTGCTCTTGTAAGGATCTGGATTTGCAGGCAGGAAACCGACTCATTCCAGTTGACACATTCCGGTTCCTCTGCCTTCCCATCCCACCCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     220037 135 -   1771730 TTCTC-TCCCCCTCCCCAATAGACTTC--CTTAG-TTCTCCTCCCTCT-GTTTGCTCTTGCAAGGATCTGGATTTGCAGGCAGGAAACCGACTCATTCCCGTTGACACGTTCCGGTTCCTCTGCCTTACCATCCTACCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     302022 135 -    457564 TTCTC-TCCCCCTCCCCAATAGACTTC--CTTAG-TTCTCCTCCCTCT-GTTTGCTCTTGTAACGATCTGGATTTGCAGGCAGGAAACGGACTCATTCCAGTTGACACATTCCGGTTCCTCTGCCTTCCCATCCCACCCA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               105285 131 + 123392446 TTCTC--ACCCCT-CCCAGTGAACTTC--CTCTG-TTCTCCTCCCTCTCCTTTGCTCTTACAAGGATCTGGATTTTCAGGCAGGAAG-TGAC-AGTTCCAGTTGACACATTCCAGTTC-TCTGCCTTCCCACCCCGCCCC
i micMur3.chr6             C 0 I 17
s proCoq1.NW_012152574v1     599384 127 +    730504 -------ACCCCTCCCCAGTGAACTTC--CTCTG-TTCTCCTCCCTCTACTTTGCTCTTACAAGGATCTGGATTTGCAGGCAGGAAA-GGAC-AGTTCCAGTTGACACATTCCAGTTC-TCTGCCTTCCCACCCTACCCC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           113799 131 +  18854210 TTCTC--ACCCCCTCCCAGTGAACTTC--CTCTG-TT---CTCCCTCTCCTTTGCTCTTACAAGGATCTGGATTCACAGGTAGGAAACTGAC-AGGTCCAGTTGACACATCCCAGTTCTTCTGCCCTCCCACCCCACCCC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26231445 108 +  26524999 TTCTCACCCTCCTCCCCTCTACACTTCCTCTCAG-CCTCTCTTCCGCC-CTCTTCACC----------------------AAGGAACCTGATACATTCCAGTTGACACATCCCAGTTC-CCTGCTCCCCTCTC-------
i canFam3.chr35            C 0 C 0
e mm10.chr17               57934537  69 -  94987271 I
e dasNov3.JH582591            42065 4990 +    102524 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=54245.000000
s hg38.chr6_GL000254v2_alt   891050 6 +   4827813 GCTTGA
s panTro5.chr6             29853818 6 + 175400573 ACTTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30088187 6 + 173848474 ACTTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5894808 6 +   6154872 GCTTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30084404 6 + 172585720 GCTTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29746947 6 - 170955103 GCTTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2795622 6 -   2996164 GCTTGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     546696 6 +    766320 GCTTGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29002792 6 -  71996105 GCTTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     178997 6 +    290775 GCTTGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2637718 6 -   3067355 GCTTGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30079685 6 + 171630274 GCTTGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           226466 6 -    242197 GCTTGC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     220172 6 -   1771730 ACTTGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     302157 6 -    457564 GCTTGC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     599511 4 +    730504 --ATAC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           113930 5 +  18854210 -CTTGC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26231553 6 +  26524999 CCCTGC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               105416 17 + 123392446 I
e mm10.chr17               57934537 69 -  94987271 I
e dasNov3.JH582591            42065 4990 +    102524 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=110916.000000
s hg38.chr6_GL000254v2_alt   891056 12 +   4827813 TGCCTCTG--ATGT
s panTro5.chr6             29853824 14 + 175400573 TGCCTCTGATATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30088193 14 + 173848474 TGCCTCTGATATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5894814 14 +   6154872 TGCCTCTGATATGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30084410 14 + 172585720 TGCCTCTGGTATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29746953 14 - 170955103 TGCCTCTGGTATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2795628 14 -   2996164 TGCCTCTGGTATGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     546702 14 +    766320 TGCCTCTGGTATGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29002798 14 -  71996105 TGCCTCTGGTATGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     179003 14 +    290775 TGCCTCTGGTATGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2637724 14 -   3067355 TGCCTCTGGTATGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30079691 14 + 171630274 AGCCTCGGCTATGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           226472 14 -    242197 AGCCTCGGCTATGT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     220178 14 -   1771730 AGCCTCGGCTATGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     302163 14 -    457564 CGCCTCGGCTATGT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     599515 12 +    730504 TGCTTCTGCTAC--
i proCoq1.NW_012152574v1   C 0 I 2
s otoGar3.GL873550           113935 12 +  18854210 TGCCTCTGCTAT--
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               57934606 12 -  94987271 TTCTTCTAGTGG--
i mm10.chr17               I 69 C 0
s canFam3.chr35            26231559 12 +  26524999 TGCCTCTGTTAC--
i canFam3.chr35            C 0 C 0
e micMur3.chr6               105416 17 + 123392446 I
e dasNov3.JH582591            42065 4990 +    102524 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1689655.000000
s hg38.chr6_GL000254v2_alt   891068 149 +   4827813 T---CTCC-AGTTCCCTTCTCCCAGGTCCC-----------------ACGTCTGCTCCCCGCCACCTCCAGGGAATCACCTGTCATGGTGGATGAGTTTG--AGCTCACAGCCAGGCCTCCCCTATCT-CCTGTGATCCCCTATCATAAAGCCTGCACCCATCTCTCCCTGTC
s panTro5.chr6             29853838 149 + 175400573 T---CTCC-AGTTCCCTTCTCCCAGGTCCC-----------------GCGTCTGCTCCCCGCCACCTCCAGGGAATCACCTGTCATGGTGGATGAATTTG--AGCTCACAGCCAGGCCTCCCCTATCT-CCTGTGATCCCCTATCATAAAGCCTGCACCCATCTCTCCCTGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30088207 149 + 173848474 T---CTCC-AGTTCCCTTCTCCCAGGTCCC-----------------GCGTCTGCTCCCCGCCACCTCCAGGGAATCACCTGTCATGGTGGATGAATTTG--AGCTCACAGCCAGGCCTCCCCTATCT-CCTGTGATCCCCTATCATAAAGCCTGCACCCATCTCTCCCTGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5894828 149 +   6154872 T---CTCC-AGTTCCCTTCTCCCAGGTCCC-----------------GCGTCTGCTCCCCGCCACCTCCAGGGAATCACCTGTCATGGTGGATGAGTTTG--AGCTCACAGCCAGGCCTCCTCTATCT-CCTGTGATCCCCTATCATAAAGCCTGCACCCATCTCTCCCTGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30084424 152 + 172585720 TCTCCTCC-AGTTCCCTTCTCCCAGTTCCC-----------------GCGTCTGCTCCCCACCACCTCCAAGGAATCACCTGTCATGGTGGATGAGTTTG--AGCTCACAGCCAGGCCTCCCCTATCT-CCTGTGATCCCCTATCATAAAGCCTGCACCCATCTCTCCCAGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29746967 152 - 170955103 TCTCCTCC-AGTTCCCTTCTCCCAGTTCCC-----------------GCGTCTGCTCCCCACCACCTCCAAGGAATCACCTGTCATGGTGGATGAGTTTG--AGCTCACAGCCAGGCCTCCCCTATCT-CCTGTGATCCCCTATCATAAAGCCTGCACCCATCTCTCCCAGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2795642 152 -   2996164 TCTCCTCC-AGTTCCCTTCTCCCAGTTCCC-----------------GCGTCTGCTCCCCACCACCTCCAAGGAATCACCTGTCATGGTGGATGAGTTTG--AGCTCACAGCCAGGCCTCCCCTATCT-CCTGTGATCCCCTATCATAAAGCCTGCACCCATCTCTCCCAGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     546716 152 +    766320 TCTCCTCC-AGTTCCCTTCTCCCAGTTCCC-----------------GCGTCTGCTCCCCACCACCTCCAGGGAATCACCTGTCATGGTAGATGAGTTTA--AGCTCACAGCCAGGCCTCCCCTATCT-CCTGTGATCCCCTATCATAAAGCCTGCACCCATCTCTCCCGGTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29002812 152 -  71996105 TCTCCTCC-AGTTCCCTTCTCCCAGTTCCC-----------------GCGTCTGCTCCCCACCACCTCCAGGGAATCACCTGCCATGGTGGATGAGTTTG--AGCTCACAGCCAGGCCTCCCCTATCT-CCTGTGATCCCCTATCATAAAGCCTGCACCCATCTCTCCCGGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     179017 152 +    290775 TCTCCTCC-AGTTCCCTTCTCCCAGTTCCC-----------------GCGTCTGCTCCCCACCACCTCCAGGGAATCACCTGTCATGGTAGATGAGTTTA--AGCTCACAGCCAGGCCTCCCCTATCT-CCTGTGATCCCCTATCATAAAGCCTGCACCCATCTCTCCCGGTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2637738 152 -   3067355 TCTCCTCC-AGTTCCCTTCTCCCAGTTCCC-----------------GCGTCTGCTCCCCACCACCTCCAGGGAATCACCTGTCATGGTGGATGAGTTTG--AGCTCACAGCCAGGCCTCCCCTATCT-CCTGTGATCCCCTATCATAAAGCCTGCACCCATCTCTCCCGGTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30079705 153 + 171630274 TCTCCTCC-AGCTCCCTTCTCCCAGGTCCC-----------------GAGTTTGCTCCCCACCACCTCCAGGGAATCACCTATTATGGTGGATAAGTCTGTAAGATCACAGCCAGGCCTCCCCTATCT-CCTGTGAT-CCGTATCATAAAGCCTACACCCATCTCGCCCTGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           226486 151 -    242197 TCTCCTCC-AGCTCCCTTCTCCCAGGTCCC-----------------GAGTTTGCTCCTCACCACCTCCAGAGAATCACCTATCATGGTGCATGAGTCTG--AGATCACAGCCAGGCCTCCCCTATCT-CCTGTGAT-CCGTATCATAAAGCCTGCACTCATCTCGCTCTGTC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     220192 151 -   1771730 TCTCCTCC-AGCTCCCTTCTCCCAGTTCCC-----------------AAGTTTGCTCCTCACCACCTCCAGAGAATCACCTATCATGGTGCATGAGTCTG--AGATCACAGCCAGGCCTCCCCTATCT-CCTGTGAT-CCGTATCATAAAGACTGCACCCATCTCGTTCTGTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     302177 153 -    457564 TCTCCTCC-AGCTCCCTTCTCCCAGGTCCC-----------------GAGTTTGCTCCCCACTACCTCCAGGGAATCACCTAGCATGGTGGATAAGTCTGTGAGATCACAGCCAGGCCTCCCCTATCT-CCTGTGAT-CCGTATTATAAAGCCTGCACCCATCTCGCCCTGTC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               105433 146 + 123392446 ---TCTCC-AGCTCCCTCCTCCCAGGTCCC-----------------CCATCTGCTCCCCAGCACCT-CAGGGACTCACCTGTCATGGTGGATGAGTTTG--AGCTCACAGCCAGGGCTCCC--CTGTGCCTGTGATTCCC-ACCCTAAAGCCTGCACCCATCCCTCCCTGTC
i micMur3.chr6             I 17 I 31
s proCoq1.NW_012152574v1     599529 148 +    730504 ---TCTCC-AGCTCCCTCCTCCCAGGTCCC-----------------CCATCTGTTCCCCAGCACCT-CAGGGACTCACCTGTCATGGTGGATGAGTTTG--AGCTCACAGCCAGAGCTCCCCTCTCTCCCTGTGATCCCC-ATCCTAAAGCCTGCACCCATCCCTCCCTGTC
i proCoq1.NW_012152574v1   I 2 C 0
s otoGar3.GL873550           113949 123 +  18854210 ---TCTCCAAACTCCCTTCTCCTAGGACCC-----------------CCATCTGTCC----------------------------TTGTGGATGAGTTTG--AGCTTACCACGAGGCCTCCCCTCTCTCCCTGTGAGCCCCTATGATAAAACCTACACTCATTCCTCCCTCTC
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               57934618 127 -  94987271 ------------------CCCCCA----CC-----------------CCTTTTGCTCCCCAACACCCCTAGGGAATCACTTGTCATGGGGGAAGAATTTG--AACTCA-AGTCAGGCCTCCCTTATCTTCCTGTAGTGCCCCATC-TCTGATCTCTTCCCATCTCCCCCT---
i mm10.chr17               C 0 C 0
s canFam3.chr35            26231571  86 +  26524999 -------------CTTCTCTTCCACATCCTTTGGTGGAGAAGAGGGAGCGTCTGCTCCCCAGCACCTC-----------------TGGTGGGTTAGTCTG--AGCC-----TCAGACCTGACC--------------------------------------------------
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            42065 4990 +    102524 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=300008.000000
s hg38.chr6_GL000254v2_alt   891217 34 +   4827813 ATTTTCTTCACACT---CCACTCCCCAAAACCAATGA
s panTro5.chr6             29853987 34 + 175400573 ATTTTCTTCACACT---CCACTCCCCAAAACCAATGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30088356 34 + 173848474 ATTTTCTTCACACT---CCACTCCCCAAAACCAATGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5894977 34 +   6154872 ATTTTCTTCACACT---CCACTCCCCAAAACCAATGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30084576 34 + 172585720 ATTTTCTTCACACT---CCACTCCCCATAGCCAGTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29747119 34 - 170955103 ATTTTCTTCACACT---CCACTCCCCATAGCCAGTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2795794 34 -   2996164 ATTTTCTTCACACT---CCACTCCCCATAGCCAGTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     546868 34 +    766320 ATTTTCTTCACACT---CCACTCCCCATAGCCAGTGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29002964 34 -  71996105 ATTTTCTTCACACT---CCACTCCCCATAGCCAGTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     179169 34 +    290775 ATTTTCTTCACACT---CCACTCCCCATAGCCAGTGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2637890 34 -   3067355 ATTTTCTTCACACT---CCACTCCCCATAGCCAGTGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30079858 34 + 171630274 ATTTTCTTCAAACT---CTACTCCCCATAGCCAGTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           226637 34 -    242197 ATTTTCTTCAAATT---CTACTCCCCGTAGCCACTGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     220343 34 -   1771730 ATTTTCTTCAAACT---CTACTCCCCGTAGCCAGTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     302330 37 -    457564 ATTTTCTTCAAACTCTACTACTCCCCGTAGCCAGTGA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     599677 34 +    730504 -CTCTCCTCACACGC--CCACCCCACAAAGCCAATTC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           114072 30 +  18854210 -----TCCCCCACTC--CCACCCCACATAGCCAATGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57934745 12 -  94987271 -------------------------CACAGACAATGA
i mm10.chr17               C 0 I 8
s canFam3.chr35            26231657 14 +  26524999 ------------CT---CTGCTCCTCAGA--------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               105579 31 + 123392446 I
e dasNov3.JH582591            42065 4990 +    102524 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=4339815.000000
s hg38.chr6_GL000254v2_alt   891251 425 +   4827813 TCTCTCTGACTGTCCCAAGTCTGA-CCCTCTA---CCAGATCTGATCCTCTACTTCTCTTCCTGCCTCCCGTACCCTAATACCTAATTATTTTCCTGTACCCTGCTGCTCTTCCCATAGGCATTCTGGGGTTAGCT---TACAGCTCAGGAATCCACCAAGATAGGATGTCTATTAGtaaaaatacagataaatacttgggattcatccctgaccaaggagctagaatctgtatttttaacaaactcctctggt-gattcttatgtacactgaaggctgagaacca-cGAGAAAG-TAACAGTCAAAAAGGATTT---------TAAGT----TCTCT----TGCCAAGCTCCTGATAATCCTTGTGCTCTCTTCTCTTCAAGCACCCTACCTTCAACCTCACTTCTGTCCCCTCACACACCTAT--------------------------CC--C--AGACACACACCTATTTCTAGGTGT
s panTro5.chr6             29854021 424 + 175400573 TCTCTCTGACTGTCCCAAGTCTGA-CCCTCTA---CCAGATCCGATCCTCTACTTCTCTTCCTGCCTCCCGTACCCTAATACCT-ATTATTTTCCTGTACCCTGCTGCTCTTCCCATAGGCATTCTGGGGTTAGCT---TACAGCTCAGGAATCCACCAAGATAGGATGTCTATTAGtaaaaatacagataaatacttgggattcatccctgaccaaggagctagaatctgtatttttaacaaactcctctggt-gattcttatgtacactgaaggctgagaacca-cGAGAAAG-TAACAGTCAAAAAGGATTT---------TAAGT----TCTCT----CGCCAAGCTCCTGATAATCCTTGTGCTCTCTTCTCTTCAAGCACCCTACCTTCAACCTCACTTCTGTCCCCTCACACACCTAT--------------------------CC--C--AGACACACACCTATTTCTAGGTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30088390 424 + 173848474 TCTCTCTGACTGTCCCAAGTCTGA-CCCTCTA---CCAGATCCGATCCTCTACTTCTCTTCCTGCCTCCCGTACCCTAATACCT-ATTATTTTCCTGTGCCCTGCTGCTCTTCCCATAGGCATTCTGGGGTTAGCT---TACAGCTCAGGAATCCACCAAGATAGGATATCTATTAGtaaaaatacagataaatacttgggattcatccctgaccaaggagctagaatctgtatttttaacaaactcctctggt-gattcttatgtacactgaaggctgagaacca-cGAGAAAG-TAACAGTCAAAAAGGATTT---------TAAGT----TCTCT----CGCCAAGCTCCTGATAATCCTTGTGCTCTCTTCTCTTCAAGCACCCTACCTTCAACCTCACTTCTGTCCCCTCACACACCTAT--------------------------CC--C--AGACACACACCTATTTCTAGGTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5895011 425 +   6154872 TCTCTCTGACTGTCCCAAGTCTGA-CCCTCTA---CCAGATCCCATCCTCTACTTCTCTTCCTGCCTCCCGTACCCTAATACCTAATTATTTTCCTGTACCCTGCTGCTCTTCCCATAGGCATTCTGGGGTTAGCT---TACAGCTCAGGAATCCACCAAGATAGGATGTCTATTAGtaaaaatacagataaatacttgggattcatccctgaccaaggagctagaatctgtatttttaacaaactcctctggt-gattcttatgtacactgaaggctgagaacca-cGAGAAAG-TAACAGTCAAAAAGGATTT---------TCAGT----TCTCT----CGCCAAGCTCCTGATAATCCTTGTGCTCTCTTCTCTTCAAGCACCCTACCTTCAACCTCACTTCTGTCCCCTCACATACCTAT--------------------------CC--C--AGACACACACCTATTTCTAGGTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30084610 406 + 172585720 TCTCTCTGA-----CCGAGTCTGA-CCCTCTA---CCAGATCTGATCCTCTATTTCTCTTCCTGCCTCCCGTCCCCTAATACCTAATTATTTTCCTGTACCCTCCTGCTCTTCCTACAGGCATTCTGGGGTTAGCT---TACAGCTCAGGAATTCACCAAGACAGGATGTCTAttggtaaaaatacagataaatacttgggattcatccctgaccaaggagctaaaatttgtatttttaacaaactcctctggt-gattcttatgtacactgaaggttgagaacca-TGAGAAAG-TAACAGTCAAAGGGGATTT---------GAAGT----TCT--------CCAAGCTCCTGACAATTCTTGTGC--------TCTCAAGTACCCTACTTTCAACCTCACTTCTGTCCCCTCACACACCTAT--------------------------CA--C----ACACACACCTATTTCTAGGTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29747153 406 - 170955103 TCTCTCTGA-----CCGAGTCTGA-CCCTCTA---CCAGATCTGATCCTCTATTTCTCTTCCTGCCTCCCGTCCCCTAATACCTAATTATTTTCCTGTACCCTCCTGCTCTTCCTACAGGCATTCTGGGGTTAGCT---TACAGCTCAGGAATTCACCAAGACAGGATGTCTAttggtaaaaatacagataaatacttgggattcatccctgaccaaggagctaaaatttgtatttttaacaaactcctctggt-gattcttatgtacactgaaggttgagaacca-TGAGAAAG-TAACAGTCAAAGGGGATTT---------GAAGT----TCT--------CCAAGCTCCTGACAATTCTTGTGC--------TCTCAAGTACCCTACTTTCAACCTCACTTCTGTCCCCTCACACACCTAT--------------------------CA--C----ACACACACCTATTTCTAGGTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2795828 411 -   2996164 TCTCTCTGA-----CCGAGTCTGA-CCCTCTA---CCAGATCTGATCCTCTATTTCTCTTCCTGCCTCCCGTCCCCTAATACCTAATTATTTTCCTGTACCCTCCTGCTCTTCCTACAGGCATTCTGGGGTTAGCT---TACAGCTCAGGAATTCACCAAGACAGGATGTCTAttggtaaaaatacagataaatacttgggattcatccctgaccaaggagctaaaatttgtatttttaacaaactcctctggt-gattcttatgtacattgaaggttgagaacca-TGAGAAAG-TAACAGTCAAAGGGGATTT---------GAAGT----TCT--------CCAAGCTCCTGACAATTCTTGTGCTC---TCTTCTCAAGTACCCTACTTTCAACCTCACTTCTGTCCCCTCACACACCTAT--------------------------CA--C----ACACACACCTATTTCTAGGTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     546902 412 +    766320 TCTCTCTGA-----CCGAGTCTGA-CCCTCTA---CCAGATCTGATCCTCTATTTCTCTTCCTGCCTCCCGTCCCCTAATACCTAATTATTTTCCTGTACCCTCCTGCTCTTCCTACAGGCATTCTGGGGTTAGCT---TACAGCTCAGGAATTCAGCAAGACAGGATGTCTATTGGTAAAAATACAGATAAATACTTGGGATTCATCCCTGACCAAGGAGCTAAaatctgtatttttaacaaactcctctggtagattcttatgtacactgaaggttgagaacca-TGAGAAAG-TAACAGTCAAAGGGGATTT---------GAAGT----TCT--------CCAAGCTCCTGACAATTCTTGTGCTC---TCTACTCAAGTACCCTACTTTCAACCTCACTTCTGTCCCCTCACACACCTAT--------------------------CA--C----ACACACACCTATTTCTAGGTGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29002998 411 -  71996105 TCTCTCTGA-----CCGAGTCTGA-CCCTCTA---CCAGATCTGATCCTCTATTTCTCTTCCTGCCTCCCGTCCCCTAATACCTAATTATTTTCCTGTACCCTCCTGCTCTTCCTACAGGCATTCTGGGGTTAGCT---TACAGCTCAGGAATTCAGCAAGACAGGATGTCTATTAGtaaaaatacagataaatacttgggattcatccctgaccaaggagctaaaatctgtatttttaacaaactcctctggt-gattcttatgtacactgaaggttgagaacca-TGAGAAAG-TAACAGTCAAAGGGGATTT---------GAAGT----TCT--------CCAAGCTCCTGACAATTCTTGTGCTC---TCTTCTCAAGTACCCTACTTTCAACCTCACTTCTGTCCCCTCACACACCTAC--------------------------CA--C----ACACACACCTATTTCTAGGTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     179203 412 +    290775 TCTCTCTGA-----CCGAGTCTGA-CCCTCTA---CCAGATCTGATCCTCTATTTCTCTTCCTGCCTCCCGTCCCCTAATACCTAATTATTTTCCTGTACCCTCCTGCTCTTCCTACAGGCATTCTGGGGTTAGCT---TACAGCTCAGGAATTCAGCAAGACAGGATGTCTAttggtaaaaatacagataaatacttgggattcatccctgaccaaggagctaaaatctgtatttttaacaaactcctctggtagattcttatgtacactgaaggttgagaacca-TGAGAAAG-TAACAGTCAAAGGGGATTT---------GAAGT----TCT--------CCAAGCTCCTGACAATTCTTGTGCTC---TCTACTCAAGTACCCTACTTTCAACCTCACTTCTGTCCCCTCACACACCTAT--------------------------CA--C----ACACACACCTATTTCTAGGTGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2637924 419 -   3067355 TCTCTCTGA-----CCGAGTCTGA-CCCTCTA---ACAGATCTGATCCTCTATTTCTCTTCCTGCCTCCCGTCCCCTAATACCTAATTATTTTCCTGTACCCTCCTGCTCTTCCTATAGGCATTCTGGGGTTAGCT---TACAGCTCAGGAATTCACCAAGACAGGATGTCTAttggtaaaaatacagataaatacttgggattcatccctgaccaaggagctaaaatctgtatttttaacaaactcctctggt-gattcttatgtacactgaaggttgagaacca-TGAGAAAGTTAACAGTCAAAGGGGATTT---------GAAGTTCTCTCT--------CCAAGCTCCTGACAATTCTTGTGCTCTCTTCTCCTCAAGTACCCTACTTTCAACCTCACTTCTGTCCCCTCACACACCTAT--------------------------CA--C----ACACACACTTATTTCTAGGTGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30079892 404 + 171630274 TCTCTCTTACTGGCCTGAGTCTAACCCCTCCA---CCAGATCTGATCCTCTATTTCTCTTCCTGCCTCCCGTACCCTAATACCTGATTATTTTCCTGTACCCTGCTGCTCTTCCCATAGGCATTCTGGGGTTAGCT---TACAGCTTAGGCAT---CCAAGACAGGACGTCTATTGAT---AATACAGATAAATACTTGGGATTCATCCCTGACCAAGG------ACTCTGTATTTTTAACAAACACC----------------------------------------GAGAAAG-TAACAGTCAAAGAAGATAT---------GAAGT----TCTCC----CTCCAAGCTCCTGACAATCCTTGTGCTCTCTTCTCCTCAAGCACCCTAACTTCAATCTCGCTTCCACCCCCTCACACACCTATCTCTcacacacacacacacacacacaca--cacacacacacacacaTTTCTAGGTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           226671 374 -    242197 TCTCTCTCACTGGCCTGAGTCTGACCCCTCCA---CCAGATCTGATCCTCTATTTCTCTTCCTGCCTCCCGTACCCTAATACCTGATTATTTTCCTGTACCCTGCTGCTCTTCCCATAGGCATTCCGGGGTTAGCT---TACAGCTTAGGCAT---CCAAGACAGGATGTCTATTGAT---AATACAGATAAATACTTGGGATTCATCCCTGACCAAGG------AATCTGTATTTTTAACAAACGCC----------------------------------------AAGAAAG-TAA----CAAAGAAGATTT---------GAAGT----TCTCT----CTCCAAGCTCCTGACAATCCTTGTGCTCTGTTCTCCTCAAGCACCCTAACTTCAACCTCACTTCCGCCCCCTCACACACCTAT--------------------------CA--CGCACACATACACCTATTTCTAGGTGT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     220377 371 -   1771730 TCTCTCTTACTGGCCCGAGTCTGATCCCTCCA---CCAGATCTGATCCTCTATTTCTCTTCCTGCCTCCCATTCCCTAATACCTGATTATTTTCCTGTACCCTCCTGCTCTTCCCATGGGCATTCTGGGGTTAGCT---TACAGCTTAGGCAT---CCAAGACAGGATGTCTATTGAT---AATACAGATAAATACTTGGGATTCATCCCTGACCAAGG------AATCTGTATTTTTAACAAACGCC----------------------------------------GAGAAAG-TAA----CA---AAGATTT---------GAAGT----TCTCT----CTCCAAGCTCCTGACAATCCTTGTGCTCTCTTCTCCTCAAGCACCCTAACTTCAACCTCGCTTCCGCCCCCTCACACACCTAT--------------------------CA--CGCACACACACACCTATTTCTATGTGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     302367 377 -    457564 TCTCTCTTACTGGCCCGAGTCTGACCCCTCCA---CCAGATCTGATCCTCTGTTTCTCTTCCTGCCTCCCGTACCCTAATACCTGATTATTTTCCTGTACCCTGCTGCTCTTCCCATAGGCATTCTGGGGTTAGCT---TACAGCTTAGGCAT---CCAAGACAGGATGTCTATTGAT---AATACAGATAAATACTTGGGATACATCCCTGACCAAGG------AAACTGTATTTTTAACAAACGCC----------------------------------------GAGAAAG-AAACAGTCAAAGAAGATTT---------GAAGT----TCTCT----CTCCAAGCTCCTGACAATCCTTGTGCTCTCTT---CTCAAGCACCCTAACTTCAACCTTGCTTCCGCCCCCTCACACACCTAT--------------------------CATGCACACACACACACCTATTTCTAGGTGT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               105610 397 + 123392446 TCTCTCT---TGTCCTAAGCTTGACCCCTCCA---CCAGATCTGACCCTTTATTCCTCTTCAGGCCTCCCCTACACTAACACCTAATCATTTTCCTGTGCCCTACTGCTCTTCCCATAGGCACCCT-ATGTTAGC----TACAGCTCAGGCATCCACCAAGACAGGATTTCTGTGGGtaaaaatgcag----atactcaggactcatccctgaccaaggagttagaatc--tattttaaacaaactcctctggt-g--tcctatagacactgaagtttgagaaccactgAGATGG-TAGCAGTCACAAGGGATTT---------GAGGT----TCTCT----CTCCAAGCTCCTGACA---CCCCTGCTCTCTTCTCTCCAAGCACCCTGCCTTCAGGCCCACTTCTGTCCCC--------CAAT--------------------------CA--C--------ATGCCTATTCCTAGGTGT
i micMur3.chr6             I 31 C 0
s proCoq1.NW_012152574v1     599711 397 +    730504 TCTCTCT---AGTTCCAAGCTTGACCCCTCCA---CCAGATCTGACCCTTTATTTCTCTTCCTGCCTCCCCTACCCTAACACCTAATTATTTTCCTGTACCCTGCTGCTCTTCCCATAGGCACCCTGGGGTTAGC----TACAGCTCAGGCATCCACCAGGACAGGATTCCTGttggtaaaaatgcag----acactcaggattcatccctgaccaaggagttagaatc--tattttaaacaaactcctctggt-g--tccaatgtacactgaagtttgagaaccaccgAGACGG-TAGCAGTCAGAAAGGATGT---------GATGC----TCTCT----CCCCAAGCTCCTGACA----CCCTGCTCTCTTCTCTCCAAGCACCCTGCCTTCAGCCCCACTTCTGCTCCC--------CAGT--------------------------CA--C--------ATGCCTATTTCTAGGTGT
i proCoq1.NW_012152574v1   C 0 I 33
s otoGar3.GL873550           114102 402 +  18854210 TCTCTCTTGCTGTCCCAAGCTTAAGCCCTCCA---CCAGATCTGACCCTCTATTTCTCTTCCTGCCTTCCCTACCCTAACACCTAATTATTTTCCTGTATCCTGTTGATCTTCCCCTAGGCACTCTAGGGTTAGC----TACAGCTCAGGCATCTATCAGGACAGGATTCCTGttggtaaaaatgcaa----atacttgagattcatccctgaccaaagagttagaatc--tattttaaacaaactcctctggt-gattcttatgtacactgaagtctgagaaccagtgAGATGA-TAACAGTCAGAAGGGATTT---------GAGGT----TCTCT---ACTCCAAACTCCTGACA---TCTTTGAGCTCTCCTCTCCAAGCACCCTACCTTCAGGCCCACTTCTGCCCCCT-------CCAT--------------------------AA--C--------ATAC---TTTGGAAGTGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57934765 378 -  94987271 GCTCTCTAA-----CCAGATCAAGACCCTCT-------------CTCTTCTTCCTTCCTCCCTACCCTCCCTCACGTGTAATTTTTTTTTTTTCTTGTGCTCTGCCTCTCTTCCCACAGGCATCCTGGAGTAAGCTGCATACAGC-----CATCTCCCTAGGCAGGATCTCTATGGATGAAAACGAAGA-AACTACTTGGGAATCCTTCCT----AAGGAGTTCAAACTAGTATTTTAAACAAAT----------GGTGTGTTTGTTCACTGATGTTTGGGACCCACAGAGAAGG-CAAAAATTCAAGGGAACTTATGTTGTTGGGGGT----TTTTCCCCCCTCCAAGCCCCT---------------------TCCCCTAGTGTTCTGCCAGCAGGCTCATTTCTGTCCCCT----------T--------------------------TG--G--AGACACATGTCTATTTTTAGGTGC
i mm10.chr17               I 8 C 0
s canFam3.chr35            26231671 349 +  26524999 -------------------CCTGA-CCCTCCAGCCTCAGACCTGACCCTCTGCTCCCCTTCCTGCC---------CTAACACCTCATTCTCCTC-TGTGCCCTGCTGCTCTTCC-ATAGGCA-TCTGGGGTTAAGC---TAC--CCACGGAATCCACCAGGAcagg--------------------------atcctcaggactcattcctgaccagggacttagaatctgtgtttggaaccaagtcctctggt-gatcctcgtatacaccaaagtttggggaTCC-CTTCAAAC-T----GTGAGGAGGGATCT---------GAAAT----CCCCC------ACCAACCCCTAGCAGTAC-TGTGTTCTCTTCTCTCCAAGCACCC-ACCTTCAACCCCGCTTCTGCCCACTCT--------T--------------------------CC--C----TCACAAACATATTTCTCAGC--
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            42065 4990 +    102524 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=182019.000000
s hg38.chr6_GL000254v2_alt   891676 16 +   4827813 ATAGTGATGTTCTAAA
s panTro5.chr6             29854445 16 + 175400573 ATAGTGATGTTCTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30088814 16 + 173848474 ATAGTGATGTTCTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5895436 16 +   6154872 ATAGTGATGTTCTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30085016 16 + 172585720 ATAGTGACATTCTAAA
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29747559 16 - 170955103 ATAGTGACATTCTAAA
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2796239 16 -   2996164 ATAGTGACATTCTGAA
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012002711v1     547314 16 +    766320 ATAGTGACGTTCTAAA
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17            29003409 16 -  71996105 ATAGTGATGTTCTAAA
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012099233v1     179615 16 +    290775 ATAGTGACGTTCTAAA
i manLeu1.NW_012099233v1   C 0 I 1
s colAng1.NW_012115566v1    2638343 16 -   3067355 ATAGTGACATTCTAAA
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chr4             30080296 16 + 171630274 ATAGTGATGTTTTAAA
i calJac3.chr4             C 0 I 1
s saiBol1.JH378357           227045 16 -    242197 ATAGTGATGTTCTAAA
i saiBol1.JH378357         C 0 I 1
s cebCap1.NW_016107755v1     220748 16 -   1771730 ATAGTGAGGTTCTAAA
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018509740v1     302744 16 -    457564 ACAGTGATGTTCTAAA
i aotNan1.NW_018509740v1   C 0 I 1
s micMur3.chr6               106007 16 + 123392446 GTATTGATGTTCTAAA
i micMur3.chr6             C 0 I 28
s otoGar3.GL873550           114504 16 +  18854210 ATACTGATGTTCTAAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57935143 16 -  94987271 ATACCAATGCTCCACA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26232020  9 +  26524999 -------TGTTCAAAG
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            42065 4990 +    102524 I
e proCoq1.NW_012152574v1     600108 33 +    730504 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=345007.000000
s hg38.chr6_GL000254v2_alt   891692 41 +   4827813 AATGAATATAAATCCTTGGATCACCCCAAGGTTGATATTTG
s panTro5.chr6             29854461 41 + 175400573 AATGAATATAAATCCTTGGATCACCCCAAGGTTGATATTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30088830 41 + 173848474 AATGCATATAAATCCTTGGATCACCCCAAGGTTGATATTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5895452 41 +   6154872 AATGAATATAAATCCTTGGATCATCCCAAGGTTGATCTTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30085033 41 + 172585720 AATGAATATAAACCCTTGGACCACCCCAAGGTTGATCTTTG
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29747576 41 - 170955103 AATGAATATAAACCCTTGGACCACCCCAAGGTTGATCTTTG
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2796256 41 -   2996164 AATGAATATAAACCCTTGGACCACCCCAAGGTTGATCTTTG
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1     547331 41 +    766320 AATGAATATAAACCCTTGGACCACCCCAAGGTTGATCTTTG
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17            29003426 41 -  71996105 AATGAATATAAACCCTTGGACCACCCCAAGGTTGATCTTTG
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012099233v1     179632 41 +    290775 AATGAATATAAACCCTTGGACCACCCCAAGGTTGATCTTTG
i manLeu1.NW_012099233v1   I 1 C 0
s colAng1.NW_012115566v1    2638360 41 -   3067355 AATGAATATAAACCCTTGGACCACCCCAAGGTTGATCTTTG
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chr4             30080313 41 + 171630274 AATGAATATAAATCCTTGGGCCACCCCAAGGTTGATCTTTG
i calJac3.chr4             I 1 C 0
s saiBol1.JH378357           227062 41 -    242197 AATGAATATAAATCCTTGGACCACCCCAAGGTTGATCTTTG
i saiBol1.JH378357         I 1 C 0
s cebCap1.NW_016107755v1     220765 39 -   1771730 AATGAATTTGAATCCTTGGGCCACCCCAAGGTTGACCTT--
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018509740v1     302761 41 -    457564 AATGACTATAAATCCTTAGGCCACCCCAAGGTTGATCTTTG
i aotNan1.NW_018509740v1   I 1 C 0
s otoGar3.GL873550           114520 23 +  18854210 ---GAATCAAAATCCT------AAACTGGGGT---------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57935159 10 -  94987271 ---------------------CACCCCAAGA----------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26232029 31 +  26524999 AATGACTACACATCCTGAGTCCACTC--AGGTC--------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               106023 28 + 123392446 I
e dasNov3.JH582591            42065 4990 +    102524 I
e proCoq1.NW_012152574v1     600108 33 +    730504 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=3745460.000000
s hg38.chr6_GL000254v2_alt   891733 316 +   4827813 GTAAGATCACCAAATTCTC-----ACCTTGTGTACTCTATTTCACCCTAACCCA-ATTCCTTAAGTCTCTGGGGCCACATGTCAGTGAAGATAAATTT---GAGATCTTAAATC----TCC---TTCCCT----GTGTCACATCCTTCCCTGCACCCCCAATTATTCATGTAGGGGAGAGGGGTG--GGAAAAAAAACCTCATTATAAGCTATC-CCCTAATACCCCTGGACCCAAATTT-GCTTAccttctctctctccctcaactcacctccctaatccctacatcccatttcc---cttctcacatcCTAGAGGCCACAAT---GCTATAAGGGAAGG-GAAGG
s panTro5.chr6             29854502 316 + 175400573 GTAAGATCACCAAATTCTC-----ACCTTGTGTACTCTATTTCACCCTAACCCA-ATTCCTTAAGTCTCTGGGGCCACATGTCAGTGAAGATAAATTT---GAGATCTTAAATC----TCC---TTCCCT----GTGTCACATCCTTCCCCGCACCCCCAATTATTCATGTAGGGGAGAGGGGTG--GGAAAAAAAACCTCATTATAAGCTATC-CCCTAATACCCCTGGACCCAAATTT-GCTTAccttctctctctccctcaactcacctccctaatccctacatcccatttcc---cttctcacatcCTAGAGGCCACAAT---GCTATAAGGGAAGG-GAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30088871 316 + 173848474 GTAAGATCACCAAATTCTC-----ACCTTGTGTACTCTATTTCACCCTAACCCA-ATTCCTTAAGTCTCTGGGGCCACATGTCAGTGAAGATAAATTT---GAGATCTTAAATC----TCC---TTCCCT----GTGTCACATCCTTCCCCGCACCCCCAATTATTCATGTAGGGGAGAGGGGTG--GGAAAAAAAACCTCATTATAAGCTATC-CCCTAATACCCCTGGACCCAAATTT-GCTTAccttctctctctccctcaactcacctccctaatccctacatcccatttcc---cttctcacatcCTAGAGGCCACAAT---GCTATAAGGGAAGG-GAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5895493 316 +   6154872 GTAAGATCACCAAATTCTC-----ACCTTGTGTACTTTATTTCACCCTAACCCA-ATTCCTTAAGTCTCTGGGGCCACATGTCAGTGAAGATAAATTT---GAGATCTTAAATC----TCC---TTCCCT----GTGTCACATCCTTCCCTGCACCCCCAATTATTCATGTAGGGGAGAGGGGTG--GGAAAAAAAACCTCATTATGAGCTATC-CCCTAATACCCCTGGACCCAAATTT-GCTTAccttctctctctccctcaactcacctccctaatccctacatcccatttcc---cttctcacatcCTAGAGGCCACAAT---CCTATAAGGGAAGG-GAAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30085074 314 + 172585720 GTAAGATCACCAAATTCTC-----ACCTTCTGTACTCTCTTTCACCCTAACCCA-ATTCCTTAAGTCTCTGGGGCCCCATGTCAGTAAAGATAAATTT---GAGGTCTTAAATC----TCC---TTCCCT----GTGTCACATCCTTTCCCGCACCCCCAATTATTCATGTAGGAGAGAGGGGTG--GG-AAAGGAGCCTCATTATAAGCTATC-CCCTAATACCCCTGGACACAAATTT-GCTTACCT--TCTCTCTCCCTCAACTCACCTCCCTATTCCCTAAATCCCATTTCC---CTTCTCACATCGTAGAGGCCACAAT---GCTATAAGGGAAGATTAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29747617 314 - 170955103 GTAAGATCACCAAATTCTC-----ACCTTCTGTACTCTCTTTCACCCTAACCCA-ATTCCTTAAGTCTCTGGGGCCCCATGTCAGTAAAGATAAATTT---GAGGTCTTAAATC----TCC---TTCCCT----GTGTCACATCCTTTCCCGCACCCCCAATTATTCATGTAGGAGAGAGGGGTG--GG-AAAGGAACCTCATTATAAGCTATC-CCCTAATACCCCTGGACACAAATTT-GCTTACCT--TCTCTCTCCCTCAACTCACCTCCCTATTCCCTAAATCCCATTTCC---CTTCTCACATCGTAGAGGCCACAAT---GCTATAAGGGAAGATTAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2796297 314 -   2996164 GTAAGATCACCAAATTCTC-----ACCTTCTGTACTCTCTTTCACCCTAACCCA-ATTCCTTAAGTCTCTGGGGCCCCATGTCAGTAAAGATAAATTT---GAGGTCTTAAATC----TCC---TTCCCT----GTGTCACATCCTTTCCCGCACCCCCAATTATTCATGTAGGAGAGAGGGGTG--GG-AAAGGAACCTCATTATAAGCTATC-CCCTAATACCCCTGGACACAAATTT-GCTTACCT--TCTCTCTCCCTCAACTCACCTCCTTATTCCCTAAATCCCATTTCC---CTTCTCACATCGTAGAGGCCACAAT---GCTATAAGGGAAGATTAAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     547372 314 +    766320 GTAAGATCACCAAATTCTC-----ACCTTTTGTACTCTCTTTCACGCTAACCCA-ATTCCTTAAGTCTCTGGGGCCCCATGTCAGTAAAGATAAATTT---GAGGTCTTAAATT----TCC---TTCCCT----GTGTCACAACCTTTCCCGCACCCCCAATTATTCATGTAGGAGAGAGGGGTG--GG-AAAGGAACCTCATTATAAGCTATC-CCCTAATACCCCTGGACACAAATTT-GCTTACCT--TCTCTCTCCCTCAACTCACCTCCCTATTCCCTAAATCCCATTTCC---CTTCTCACATCCTAGAGGCCACAAT---GCTATAAGGGAAGATTAAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29003467 314 -  71996105 GTAAGATCACCAAATTCTC-----ACCTTTTGTACTCTCTTTCACCCTAACCCA-ATTCCTTAAGTCTCTGGGGCCCCATGTCAGTAAAGATAAATTT---GAGGTCTTAAATC----TCC---TTCCCT----GTGTCACATCCTTTCCCACACCCCCAATTATTCATGTAGGAGAGAGGGGTG--GG-AAAGGAACCTCATTATAAGCTATC-CCCTAATACCCCTGGACACAAATTT-GCTTACCT--TCTCTCTCCCTCAACTCACCTCCCTATTCCCTAAATCCCATTTCC---CTTCTCACATCCTAGAGGCCACAAT---GCTATAAGGGAAGATTAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     179673 314 +    290775 GTAAGATCACCAAATTCTC-----ACCTTTTGTACTCTCTTTCACGCTAACCCA-ATTCCTTAAGTCTCTGGGGCCCCATGTCAGTAAAGATAAATTT---GAGGTCTTAAATT----TCC---TTCCCT----GTGTCACAACCTTTCCCACACTCCCAATTATTCATGTAGGAGAGAGGGGTG--GG-AAAGGAACCTCATTATAAGCTATC-CCCTAATACCCCTGCACACAAATTT-GCTTACCT--TCTCTCTCCCTCAACTCACCTCCCTATTCCCTAAATCCCATTTCC---CTTCTCACATCCTAGAGGCCACAAT---GCTATAAGGGAAGATTAAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2638401 313 -   3067355 GTAAGATCACCAAATTCTC-----ACCTTCTGTACTCTATTTCACCCTAACCCA-ATTCCTTAAGTCTCTGGGGCCCCATGTCAGCAAAGATAAATTT---GAGGTCTTAAATC----TCC---TTCCCT----GTGTCACATCCTTTCCTGCACCCCTAATTATTCATGTAGGGGAGAGGGGTG--GG-AAAGGAACCTCATTATAAGCTATC-CCCTAATACCCCTGGACACAAATTT-GCTTACCT--TCTCTCTCCCTCAACTCACCTCCCTATTCCCTAAATCCCATTTCC---CTTCTCACATCCTAGAGGCCACAAT---GCTATAAGGGAAGA-TAAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30080354 314 + 171630274 GTAAGATCACCAAATTCTC-----ACCTTCTGTACTTTATTTCACCCTAACCCA-ATTCCTTAAGGCTCTGGGGCCACATGTCAGTGAAGATAAATTT---GAGGTCTTAAATC----TCC---TTCCCT----GTACCACATCCTTCCCCATAC-CCCAATTATTCACATAGGAGAGAGGGGTG--GG-AAAGGCACCTCATTATAAGCTATC-CCCTAGTACCCCTGGACCCATATTT-TCTTACCTTCTCTCTCTCCCTCAACTCACCTCCCTAATCTCTGCATCCCATTTCC---CTTCTCACATCCTAGAGGCCGCAAT---GCTATAAGGGAAGA-TAAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           227103 314 -    242197 GTAAGATCACCAAATTCTC-----ACCTTCTGTACTTTATTTCACCCTAACCCA-ATTCCTTAAATCTCTGGGGCAACATGTCAGTGAAGATAAATTT---GAAGTCTTACATC----TCC---TTCCCT----GTGCCACATCCTTCCCCGTAC-CCCAATTATTCATGTAGGAGAGAGGGGTG--GG-AAAGGAACCTCATTATAAGCTATT-CTCTAATACCCCTGGACCCAAATTT-TCTTACCTTCTTTCTCTCCCTCAACTCACCTCCCTAATCTCTACATCCCATTTCC---CTTCTCACATCCTAGAGGCCACAAT---GCTATAAGGGAAGA-TAAGT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     220804 310 -   1771730 ---AGATCACCAAATTCTC-----ACCTTCTATACTTTATTTCACCCTAACCCA-ATTCCTTAAGTCTCTGGGGCCACATGTCAGTGAAGATAAATTT---GAGGTCTTAAATC----TCC---TTCCCT----GTGCCACATCCTTCCCCATAC-CCCAATTATTCATGTAGGAGAGC-AGGTG--GG-AAAGGAACCTCATTATAAGCTATC-CCCTAATACTCCTGGACCCAAATTT-TCTTACCTTCTCTCTCTCCCTCAACTCACCTCCCTAATCTCTACATCCCATTTCC---CTTCTCACATCCTAGAGGCCACAAT---GCTATAAGGGAAGA-TAAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     302802 313 -    457564 GTAAGACCACCAAATTCTC-----ACCTTCTGTACTTTATTTCACCCTAACCCA-ATTTCTTAAGTCTCTGGGGCCACATGTCAGTGAAGATAAATTT---GAGGTCTTAAATC----TCC---TTCCCT----GTGCCACATCCTTCCCCGTAC-CCCAATTATTCATGTAGGAGAGAGGGGTG--GG-AAAAGAACCTCATTATAAGCTATC-CCCTAATACCCCTGGACCCAAATTT-TCTTACCTTCTCTCTCTCCCTC-ACTCATCTCCCTAATCTCTACATCCCATTTCC---CTTCTCACATCCTAGAGGCCACAAT---GCTATAAGGGAAGA-TAAGT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               106051 312 + 123392446 ATAAGATCACCAGATCCTC-----ACTTTCTGTACTC--TGTCACCCTAGCCCA-ATCCCTT-AGCCCATGGGGCCACATGTCAGAGAAGATAAATCTGAGGAGGTCCCAAATC----TCCTCTTTCCCC----TTGTCGCATTCTTCCCCACACCCCCAATTATTCCTATAGGGGAGAGGAGCAGGGG-AAAGGAATCTCATTATAAACCATCACCCTAATACCCCTGGACCTAAGTTT-TCCTACC--------TTCCCCCTGCTCCCCTCCCTAA-CCCTACATCCCATTCTC---TTTTTCACATCCTAAAGGCCACAAT---GCCTAAAGGGAAGA-TAAAG
i micMur3.chr6             I 28 I 41
s proCoq1.NW_012152574v1     600141 313 +    730504 ATAAGATCATCAGATCCTC-----ACCTTCTGTACTCTATGTCACCCTAGCCCA-ATCCCTTAAGCCCGTGGGGCCACATGTCAGAGAAGATAAATCTGAGGAGGTCCCAAATC----TCCTTTTTCCCC----GTGTCACATTCTTCCCCATAACCCCAATTATTCCTGTAGGGGAGAGGGGCA--GG-AAAGGAATCTCATTACAAACCATCGCCCTAATACCCC-GGACCTAAATTT-TCCTACCT-------TTCCCCCTCCTCCCCTCCCTAA-CCCTACATCCCATTCTC---CTTCTCACATCCTAGAGGCCACAAC---GCCAAAAGGGAAGA-TAAAG
i proCoq1.NW_012152574v1   I 33 C 0
s otoGar3.GL873550           114543 321 +  18854210 ACAAGATCACCAGAGCTATACTGAACCTTCTGAACTCTATTTCACCCTAGCCTA-ATTCATTAAACCTCTAGAGCCACATGTCAGAAAAGTTAAATCTGAGGAGGTCCCAAATG----TCCTTTTTTCCCTTCTGTGTCACATCCTTCCCCATACCCCTAATTATT-CTGTAGAGGAGAAGAGGG--GG-AAAGGAATCTCATTATAAATGTT--CCCTAATACCCCTTGACCTAAGTTTGTTTTATCT-------TCCCACCTCCTCCCTTCCCTAA-CCCTACATCCCATTTCC---CTTCTCACAACCTAGAGGCCATAGT---GCTGCCAGGGAAGG-TAAAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57935169 253 -  94987271 ATAAAATGGCCAAATCTTC-----CACCTGTACAATTTTTCTAA--------------TCTCAAATCGCTGGAGCCACATGTCAGA---------------AAGGACCCAAACT----TTT---GTC-------CTGTCAGTTCCCTC----------------------TTGGAGAGAGACTTG--GT-AAAGAAATCTCACCATAGACCATC-CTCTAACCCCA--------AAATTT-CTTCACCA--CGACCAACCTTTTCCTCTTCCCCAAAA---CTACATCCTGTTTTCTCTCTTTTCAGATCCACTAGGCCATAATAAAACCAAACGCTAAAA------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26232060 295 +  26524999 ---------CTGAATCCTC-----TCC-TCTGTACTCCTCTCTACTCTCCCCCAGATCCCTCACGATTCTGGGGTCATATGTCAGAGAAGATAAATTT---GAGGCCCCAAGTCTCAGTCC---TTCCCT----GTGCTACGTTCCTCCTCAAACTCCCAGTTACTCA---AAGGGCACAGAGTG--GG-AGAGGAATCTGATGGCA--CCATT-CTCTACTCCCCT---ACCCAAATTC-GCTTACCT--AGCCCCCCCTTC--CCTGCCTCCCTTA-CCCTACCTCC-ATCTCC---CTTCTCACACCTCAGAGGCCACAAT---GCCATAAG-GAAGA-TAAAG
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            42065 4990 +    102524 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=473024.000000
s hg38.chr6_GL000254v2_alt   892049 43 +   4827813 TCAGGAC----------CCAAGTTCCATAAGGTGCCCCAA---GATCTCTCATTA-T
s panTro5.chr6             29854818 43 + 175400573 TCAGGAC----------CCAAGTTCCATAAGGTGCCCCAA---GATCTCTCATTA-T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30089187 43 + 173848474 TCAGGAC----------CCAAGTTCCATAAGGTGCCCCAA---GATCTCTCATTA-T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5895809 43 +   6154872 TCAGGAC----------CCAAGTTCCATAAGGTGCCCCAA---GATCTCTCATTA-T
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30085388 43 + 172585720 TCAGGAC----------CCAAGTTCCATAGGGTGCCCCAA---GATCTCTCATTA-T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29747931 43 - 170955103 TCAGGAC----------CCAAGTTCCATAGGGTGCCCCAA---GATCTCTCATTA-T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2796611 43 -   2996164 TCAGGAC----------CCAAGTTCCATAGGGTGCCCCAA---GATCTCTCATTA-T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     547686 43 +    766320 TCAGGAC----------CCAAGTTCCATAGGGTGCCCCAA---GATCTCTCATTA-T
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29003781 43 -  71996105 TCAGGAC----------CCAAGTTCCACAGGGTGCCCCAA---GATCTCTCATTA-T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     179987 43 +    290775 TCAGGAC----------CCAAGTTCCATAGGGTGCCCCAA---GATCTCTCATTA-T
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2638714 43 -   3067355 TCGGGAC----------CCAAGTTCCATAGGGTGCCCCAA---GATCTCTCATTA-T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30080668 44 + 171630274 TCAGGAC----------CAAAGTTCCATAGGATGCTCCAG---GATCTCCCAGTATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378357           227417 43 -    242197 TCAGGAC----------CCAAGCTCCAAAGGATGCCCCAG---GATCTCCCACTA-C
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     221114 43 -   1771730 TCAGGAC----------CCAAGTTCCAAAGGATGCCCCAG---GATCTCCCACTA-T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     303115 43 -    457564 TCAGGAC----------CCAAGTTCCATAGGATGCCCCAG---GATCTACCAGTA-T
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     600454 42 +    730504 -TAGGGA----------CCAAGTTCCCCAGGATGTCCCAG---CTTCTCTCACTA-A
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           114864 43 +  18854210 GCAGGAC----------CCAAGTTCCCCAGGATGTACCAG---CATCTCTCACTA-T
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57935422 51 -  94987271 TCAGGACCCCCCCCCCACCAGGTTCCACAGGAGGCCCAGG---GTTCTGACTGT---
i mm10.chr17               C 0 C 0
s canFam3.chr35            26232355 46 +  26524999 TGAAGAC----------TCAAGTTCCACAAGATGCCCAACGATGATCTCTCCTCC-T
i canFam3.chr35            C 0 C 0
e micMur3.chr6               106363 41 + 123392446 I
e dasNov3.JH582591            42065 4990 +    102524 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=2912189.000000
s hg38.chr6_GL000254v2_alt   892092 253 +   4827813 CCCCACGCTACCTCCTT------GCCCCTCTCCCCCACTGCCATTCTTTTCTG--TTCTC--TTCTCCTTGT---ATGTTGACTCTTCTTCATCCCCATGCTATTGTGG------GGGTTCCCATGTGGA-TCCCCAATCCAATTCATTTTCCCAGTGCCTCTGCCCACCTCTTGATCAT---TAGCCTTCCCCAATCACCATATGCCATCTA-TCCCACAGTCTGGGAATGCTCAACAGGGTTGGGAATAGAAGGATGAGAAGGAGTCA--GGTAGGG
s panTro5.chr6             29854861 253 + 175400573 CCCCACGCTACCTCCTT------GCCCCTCTCCCCCACTGCCATTCTTTTCTG--TTCTC--TTCTCCCTGT---ATATTGACTCTTCTTCATCCCCATGCTATTGTGG------GGGTTCCCATGTGGA-TCCCCGATCCAATTCATTTTCCCAGTGCCTCTGCCCACCTCTTGATCAT---TAGCCTTCCCCAATCACCATATGCCATCTA-TCCCACAGTCTGGGAATGCTCAACAGGGTTGGGAATAGAAGGATGAGAAGGAGTCA--GGTAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30089230 253 + 173848474 CCCCACGCTACCTCCTT------GCCCCTCTCCCCCACTGCCATTCTTTTCTG--TTCTC--TTCTCCCTGT---ATATTGACTTTTCTTCATCCCCATGCTATTGTGG------GGGTTCCCATGTGGA-TCCCCGATCCAATTCATTTTCCCAGTGCCTCTGCCCACCTCTTGATCAT---TAGCCTTCCCCAATCACCATATGCCATCTA-TCCCACAGTCTGGGAATGCTCAACAGGGCTGGGAATAGAAGGATGAGAAGGAGTCA--GGTAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5895852 253 +   6154872 CCCCACGCTACCTCCTT------GCCCCTCTCCCCCACTGCCATTCTTTTCTG--TTTTC--TTCTCCCTGT---ATGTTGACTCTTCTTCATCCCCATGCTATTGTGG------GGGTTCCCATGTGGA-TCCCCAATCCAATTCATTTTCCCAGTGCCTCTGCCCACCTCTTGATCAT---TAGCCTTCCCCAATCACCATATGCCATCTA-TCCCACAGTCTGGGAATGCTCAACAGGGTTGGGAATAGAAGGATGAGAAGGAGTCA--GGTAGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30085431 253 + 172585720 CCCTACCCTACCTCCTT------GCCCCTCTTCCCCACTGCCATTCTTTTCTG--TTCTC--TTCTCCCTAT---ATGCTGACTCTTCTCCATCCCCATGCTACTGTGG------GGGCTCCCATGTGGA-TCCCCAATCCAAATCATTTTCCCAGTGCTTTTGCCCACCTCTTGATCAT---TAGCCTTCCCCAATCTCCATATGCCATCTA-TCCCACAGTCTGGGAATGCTCAACAGGGTTGGAAATAGAGAGATGAGAAGGAGTCA--GGTAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29747974 253 - 170955103 CCCTACCCTACCTCCTT------GCCCCTCTTCCCCACTGCCATTCTTTTCTG--TTCTC--TTCTCCCTAT---ATGCTGACTCTTCTCCATCCCCATGCTACTGTGG------GGGCTCCCATGTGGA-TCCCCAATCCAAATCATTTTCCCAGTGCTTTTGCCCACCTCTTGATCAT---TAGCCTTCCCCAATCTCCATATGCCATCTA-TCCCACAGTCTGGGAATGCTCAACAGGGTTGGAAATAGAGAGATGAGAAGGAGTCA--GGTAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2796654 253 -   2996164 CCCTACCCTACCTCCTT------TCCCCTCTTCCCCACTGCCATTCTTTTCTG--TTCTC--TTCTCCCTAT---ATGCTGACTCTTCTCCATCCCCATGCTACTGTGG------GGGCTCCCATGTGGA-TCCCCAATCCAAATCATTTTCCCAGTGCTTTTGCCCACCTCTTGATCAT---TAGCCTTCCCCAATCTCCATATGCCATCTA-TCCCACAGTCTGGGAATGCTCAACAGGGTTGGAAATAGAGAGATGAGAAGGAGTCA--GGTAGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     547729 253 +    766320 CCCCACCCTACCTCCTT------GCCCCTCTTCCCCACTGCCATTCTTTTCTG--TTCTC--TTCTCCCTAT---ATGCTGATTCTTCTCCATCCTCATGCTATTGTGG------GGGCTCCCATGTGGA-TCCCCAATCCACATCATTTTCCCAGTGCTTTTGCCCACCTCTTGATCAT---TAGCCTTCCCCAATCTCCATATGCCATCTA-TCCCACAGTCTAGGAATGCTCAACAGGGTTGGAAATAGAGAGATGAGAAGGAGTCA--GGTAGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29003824 252 -  71996105 CCCCACCCTACCTCCTT------GCCCCTCTTCCCCACTGCCATTCTTTTCTG--TTCTC--TTCTCCCTAT---ATGCTGACTCTTCTCCATCCCAATGCTATTGTGG------GGGTTCCCATGTGGA-TCCCCAATCCAAATCA-TTTCCCAGTGCTTTTGCCCACCTCTTGATCAT---TAGCCTTCCCCAGTCTCCATATGCCATCTA-TCCCACAGTCTGGGAATGCTCAACAGGGTTGGAAATAGAGAGATGAGAAGGAGTCA--GGTAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     180030 253 +    290775 CCCCACCCTACCTCCTT------GCCCCTCTTCCCCACTGCCATTCTTTTCTG--TTCTC--TTCTCCCTAT---ATGCTGATTCTTCTCCATCCTCATGCTATTGTGG------GGGCTCCCATGTGGA-TCCCCAATCCAAATCATTTTCCCAGTGCTTTTGCCCACCTCTTGATCAT---TAGCCTTCCCCAATCTCCATATGCCATCTA-TCCCACAGTCTAGGAATGCTCAACAGGGTTGGAAATAGAGAGATGAGAAGGAGTCA--GGTAGGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2638757 256 -   3067355 CCCCACCCTACCTCCTT------GCCCCTCTCCCCCACTGCCATTCTTTTCTG--TTCTC--TTCTCCGTAT---ATGCTGACTCTTCTCCATCCCCATGCTATTGTGGGGGCTCGGGCTCCCATGTGGA-TCCCCAATCCAAATCATTTTCCCAGTGCTTTTGCCCACCTCTTGATCAT---TAGCCTTCCCCAATCTCCATATGCCATCTA-TCCCACAGTCTGGGAATGCTCAACAGGGTTGGAAATAGAGGGATG---AGGAGTCA--GGTAGGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30080712 253 + 171630274 CCCAACTCTTCCTCCTG------GTCCCTCTCCCCCACTGCCATTCTCTTCTG--TTCTC--TTTCTTCTGCCTGATCCTGACTCTTCTCCATCCCCATGCTATTGTGG------GGGATCCCATGTGGA-CCCCCAATCCAATTCATTTTCCCAGTACCTCTGCCCACCTCTTGATCAT---TAGCCTTCCCCAATCACCATATGCCATCTA-TCCCACAGTCTGGGAATGCTCAACAGGGTTGGGAAGAGAGGGATG---AGGAGTCA--GGTAGGG
i calJac3.chr4             C 0 I 21744
s saiBol1.JH378357           227460 252 -    242197 CCCGACTCTTCCTCCTG------GTCCCTCTCCCCCACTGCCATTCTTTTCCG--TTCTC--TTTCTTTTGCCTGATCCTGACTCTTCTCCATCCCCATGCTATCGTGG------GGGCTCCCATGTGGA-CCCACAATCCAATTCATTTTCCCAGTACCTCTGCCCACCTCTTGAT-AC---TAGCCTTCCCCAATCACCATATGCCATCTA-TACCACAGTCCGAGAATGCTCAACAGGGTTGAGAAGAGAGGGATG---AGGAGTCA--GGTAGGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     221157 254 -   1771730 CCCCACTCTTCCTCCTG------CTTCCTCTCCCCCACTGCCATTCTTTTCTG--TTCTC--TTTCTTCTGCCTGATCCTGAATCTTCTCCAACCCCATGCTATGCTGG------GGGCTCCCATGTGGACCCCCCAATCCAATTCATTTCCCCAGTACCTCTGCCCAACTCTTGATCAT---TAACCTTCCCCAATCACCATATGCCATCTA-TCCCACAGTCCGGGAATACTCAACAGGGTTGGGAAGAGAGGGATG---AGGAGTCA--GGTAGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     303158 253 -    457564 CCCCACTCTTCCTCCTG------GTCCCTCTTCCCCACTGCCATTCTTTTCTG--TTCTG--TTTCTTCTGCCTGATCCTGACTCTTCTCCATCCCCATGCTATTGTGG------GGGCTCCCCTGTGGA-CCCCCAATCCAATTCATTTTCCCAGTACCTCTGCCCACCTCTTGATCAT---TAGCCTTCCCCAATCACCATATGCCATCTA-TGCCACAGTCCGGGAATGCTCAACAGGGTTGGGAAGAGAGGGATG---AGGAGTCA--GGTAGGG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               106404 231 + 123392446 ACCCACCCTTCCTCCTT----TCCCTCCTCCCCCCAAATGCAATTCTTTTCTG--TTC----TTCTCCCTGT---ATCTGGACACTTCCCCGTCCCCATGCTATTGTGG------GGGCTCCAGTGTCGA-C-CCTAATCCAACT------------GCCTCTGCCCACCTCTTAACCAC-------------CAAACCCCACATGCCAAGTATTCCCACAGCCCAGGAATCCTCAGTGGGGCTGACAATAGAGAGACAAGAAGGAGCTG--GGAAGGG
i micMur3.chr6             I 41 C 0
s proCoq1.NW_012152574v1     600496 238 +    730504 ccccaccctacctccttcccacccccacccccaccAATTGCCATTCTTTTCTG--TTCTTT-TTCTCCCTGT---ATCCCGACTCTTCTCCATCCCCATGCTATTGTGG------GGGGTCCAGTATAGA-C-CCTAATCCAACT------------GCCTCTGCCCACCTCTTGACCAT-------------CAAATCCCACATGCCATATATTCCCATAGCCCAGGAATCCTCAGTGGGGCTGGGAATAGAGAGATGAGAAGGAGCCG--GGAAGGG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           114907 243 +  18854210 CCCCACCCTTCCTCCTA---------GTCCCCTGCCACTGCCATTCTTTTCTA--TTTTTTCTTCTCCCTAT---ATCCTGACTCTTTTCCAT-CCCATGCCATTGTGG------GAGCTCTGGTGTGGA-CTCCTAATCCAACTCCTGTT-CCAGCGCTTCTGCCTACATCTTGGACAT-------------CAAACACCACATGCCATATATTCCCACAGTCCAGGAATCCTCAGTGGGGCTGGGAATTGAGGCATGAGAAAGAGTTGTTGGAAGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57935473 221 -  94987271 TCCCACCCTCCTCCCCA--------CCCCCTCCCCGAT--CCATTCTTTT--------TG--ATCTCCCTGT---ACACTGACTCTTCATC--CCCAATGCTGTTGTAG------GGGTTCCT-TATGGA-CCCCCAATACA-CTCACTCTCCCAGTGCCTCAGCCCACCTCTTAACCATTATTAGTCTTTCCCAGA-GCTGTAGGCCATAT--TCTCACAG-----GAATCCCCTAAGAGAT---------AGAGATG---AAGAGTCA--GGCAG--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26232401 216 +  26524999 --------CATCATCAT------CACTCCCTCCCCCACTGCCATCCCTCCCTGCTTTCTC--TCCTGCCTGT---AACCAGACTCCCCTCTATCCCCATGCAATTGTGG------GGGCTCCCATGTGGA-TCTCTAATGCAGCTCA-TTTCCCAGTGCCCATGCCCACCTCCTAACCAT---TAGCTCTCCCCGACCACAATATGCTGTCTA-TCCCACAGTCCAGGAATCCTCTGCAGGGCAGGG--------------------------------
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            42065 4990 +    102524 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=6605872.000000
s hg38.chr6_GL000254v2_alt   892345 493 +   4827813 CTCACCACTACCTTGCTGTTTTGTTAAGATAAATAAACTAGAGCTCTCAAGTCTCTCAAAAT--TTTCCTCATTCTGTCCCTATTCCTTCCAGCTCCAACCTAC-GCCAAGATTTTACCTTGTTACCATGGTAAATGTAAACCCCCAATCCAGCTCCCCACCTCTGACATTCCCTCCA---------CCCCCAA--CCCATTCCAGGGTTAGTTTACTCCCT-------CAGAGGATCAGTGTCTCCTAATACCTTAAATCCACCA-------------CCAGTTTCTCCAAACCCC-GACACTTCTGCGAGACTCCCG-----CAGCGGGGCAGAAGGGTCTGCCTTGCAGCATGCTTAAC----CATCTTGAGCCCCTAGACCCTCATCTTGGACCTCCAGCCCCTGCGACTC--------------TCCCCAAGCTCCTGCACCCCCAGCCCATCTCCTGCCAGT-CACACAAGGGAGGGGTCTGCCTCGCAATCCCAGAGACGACTCAGACAGATGGGGGCGCGTGCAGCTGGCT--------------------GGCCCCCTGCCCC
s panTro5.chr6             29855114 493 + 175400573 CTCACCACTACCTTGCTGTTTTGTTACGATAAATAAACTAGAGCTCTCAAGTCTCTCAAAAT--TTTCCTCATTCTGTCCCTATTCCTCCCAGCTCCAACCTAC-GCCAAGATTTTACCTTGTTACCATGGTAAATGTAAACCCCCAATCCAGCTCCCCACCTCTGACATTCCCTCCA---------CCCCCAA--CCCATTCCAGGGTTAGTTTACTCCCT-------CAGAGGATCAGTGTCTCCTAATACCTTAAATCCACCA-------------CCAGTTTCTCCAAACCCC-GACACTTCTGCGAGACTCCCG-----CAGCGGGGCAGAAGGGTCTGCCTTGCAGCATGCTTAAC----CATCTTGAGCCCCTAGACCCTCATCTTGGACCTCCAGCCCCTGCGACTC--------------TCCCCAAGCTCCTGCACCCCCAGCCCATCTCCTGCCAGT-CACACAAGGGAGGGGTCTGCCTCGCATTCCCAGAGACGACTCAGACAGATGGGGGCGCGTGCAGCTGGCT--------------------GGCCCCCTGCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30089483 493 + 173848474 CTCACCACTACCTTGCTGTTTTGTTACGATAAATAAACTAGAGCTCTCAAGTCTCTCAAAAT--TTTCCTCATTCTGTCCCTATTCCTCCCAGCTCCAACCTAC-GCCAAGATTTTACCTTGTTACCATGGTAAATGTAAACCCCCAATCCAGCTCCCCACCTCTGACATTCCCTCCA---------CCCCCAA--CCCATTCCAGGGTTAGTTTACTCCCT-------CAGAGGATCAGTGTCTCCTAATACCTTAAATCCACCA-------------CCAGTTTCTCCAAACCCC-GACACTTCTGCGAGACTCCCG-----CAGCGGGGCAGAAGGGTCTGCCTTGCAGCATGCTTAAC----CATCTTGAGCCCCTAGACCCTCATCTTGGACCTCCAGCCCCTGCGACTC--------------TCCCCAAGCTCCTGCACCCCCAGCCCATCTCCTGCCAGT-CACACAAGGGAGGGGTCTGCCTCGCAATCCCAGAGACGACTCAGACAGATGGGGGCGCGTGCAGCTGGCT--------------------GGCCCCCTGCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5896105 493 +   6154872 CTCACCACTACCTTGCTGTTTTGTTACGATAAATAAACTAGAGCTCTCAAGTCTCTCAAAAT--TTTCCTCATTCTGTCCCTATTCCTTCCAGCTCCAACCTAC-GCCAAGATTTTACCTTGTTACCATGGTAAATGTAAACCCCCAATCCAGCTCCCCACCTCTGACATTCCCTCCA---------CCCCCAA--CCCATTCCAGGGTTAGTTTACTCCCT-------CAGAGGATCAGTGTCTCCTAATACCTTAAATCCACCA-------------CCAGTTTCTCCAAACCCC-GACACTTCTGCGAGACTCCCG-----CAGCGGGGCAGAAGGGTCTGCCTTGCAGCATGCTTAAC----CATCTTGAACCCCTAGACCCTCATCTTGGACCTCCAGCCCCTGCGACTC--------------TCCCCAAGCTCCTGCACCCCCAGCCCATCTCCTGCCAGT-CACACAAGGGAGGGGTCTGCCTCGCAATCCCAGAGACGACTCAGACAGATGGGGGCGCGTGCAGCTGGCT--------------------GGCCCCCTGCCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30085684 492 + 172585720 CTCACCACTACCTTGCTG-TTTGTTATGATAAATAAATTAGAGCTCTCAAGTCTCTCAAAAT--TTTCCTCATTCTGTCTCTATTCCTTTCAGCTCCAACCTAC-GCCAAGATTTTACCTTGTTACCATGGTAAATGTAAACCCCCAATCCAGCTCCCCACCTCTGACATTCCCTCCA---------CCCCCAA--CCCATTCCAGGGTTAGTTTACTCCCT-------CAGAGGATCAGTGTCTCCCAATACCTTAAATCCACCA-------------CCAGTTTCCCGAAACCCC-TACACTTCTGCGAGACTCCCG-----CAGCGGGGCAGAAGGGTCTGCCTTGCAGCATGCTTAAC----CATCTTGAACCCCTAGACCCTCATCTTGGACCTCCAGCCCCTGCGACTC--------------TCCCCGAGCTCCTGCACCTCCAGCCCATCTCCTGCCAGT-CACACAAGGGAGGGGTCTGCCTCGCAATCCCAGAGGCGACTCAGACAGATGGAGGCGCGTGCAGCTGGCT--------------------GGCCCCCTGCCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29748227 492 - 170955103 CTCACCACTACCTTGCTG-TTTGTTATGATAAATAAATTAGAGCTCTCAAGTCTCTCAAAAT--TTTCCTCATTCTGTCTCTATTCCTTTCAGCTCCAACCTAC-GCCAAGATTTTACCTTGTTACCATGGTAAATGTAAACCCCCAATCCAGCTCCCCACCTCTGACATTCCCTCCA---------CCCCCAA--CCCATTCCAGGGTTAGTTTACTCCCT-------CAGAGGATCAGTGTCTCCCAATACCTTAAATCCACCA-------------CCAGTTTCCCGAAACCCC-TACACTTCTGCGAGACTCCCG-----CAGCGGGGCAGAAGGGTCTGCCTTGCAGCATGCTTAAC----CATCTTGAACCCCTAGACCCTCATCTTGGACCTCCAGCCCCTGCGACTC--------------TCCCCGAGCTCCTGCACCTCCAGCCCATCTCCTGCCAGT-CACACAAGGGAGGGGTCTGCCTCGCAATCCCAGAGGCGACTCAGACAGATGGAGGCGCGTGCAGCTGGCT--------------------GGCCCCCTGCCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2796907 492 -   2996164 CTCACCACTACCTTGCTG-TTTATTATGATAAATAAACTAGAGCTCTCAAGTCTCTCAAAAT--TTTCCTCATTCTGTCTCTATTCCTTTCAGCTCCAACCTAC-GCCAAGATTTTACCTTGTTACCATGGTAAATGTAAACCCCCAATCCAGCTCCCCACCTCTGACATTCCCTCCA---------CCCCCAA--CCCATTCCAGGGTTAGTTTACTCCCT-------CAGAGGATCAGTGTCTTCCAATACCTTAAATCCACCA-------------CCAGTTTCCCGAAACCCC-TACACTTCTGCGAGACTCCCG-----CAGCGGGGCAGAAGGGTCTGCCTTGCAGCATGCTTAAC----CATCTTGAACCCCTAGACCCTCATCTTGGACCTCCAGCCCCTGCGACTC--------------TCCCCGAGCTCCTGCACCTCCAGCCCATCTCCTGCCAGT-CACACAAGGGAGGGGTCTGCCTCGCAATCCCAGAGGCGACTCAGACAGATGGAGGCGCGTGCAGCTGGCT--------------------GGCCCCCTGCCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     547982 492 +    766320 CTCACCACTACCTTGCTG-TTTGTTATGATAAATAAACTAGAGCTCTCAAGCCTCTCAAAAT--TTTCCTCATTCTGTCTCTATTCCTTTCAGCTCCAACCTAC-GCCAAGATTTTACCTTGTTACCATGGTAAATGTAAACCCCCAATCCAGCTCCCCACCTCTGACATTCCCTCCA---------CCCCCAA--CCCATTCCAGGGTTAGTTTACTCCCT-------CAGAGGATCAGTGTCTCCCAATACCTTAAATCCACCA-------------CCAGTTTCCCGAAACCCC-TACACTTCTGCGAGACTCCCG-----CAGCGGGGCAGAAGGGTCTGCCTTGCAGCATGCTTAAC----CATCTTGAACCCCTAGACCCTCATCTTGGACCTCTAGCCCCTGCGACTC--------------TCCCCGAGCTCCTGCACCTCCAGCCCATCTCCTGCCAGT-CACACAAGGGAGGGGTCTGCCTCGCAATCCCAGAGACGACTCAGACAGATGGAGGCGCGTGCAGCTGGCT--------------------GGCCCCCTGCCCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29004076 492 -  71996105 CTCACCACTACCTTGCTG-TTTGTTATGATAAATAAACTAGAGCTCTCAAGTCTCTCAAAAT--TTTCCTCATTCTGTCTCTATTCCTTTCAGCTCCAACCTAC-GCCAAGATTTTACCTTGTTACCATGGTAAATATAAACCCCCAATCCAGCTCCCCACCTCTGACATTCCCTCCA---------CCCCCAA--CCCATTCCAGGGTTAGTTTACTCCCT-------CAGAGGATCAGTGTCTCCCAATACCTTAAATCCACCA-------------CCAGTTTCCCGAAACCCC-TACACTTCTGCGAGACTCCCG-----CAGCGGGGCAGAAGGGTCTGCCTTGCAGCATGCTTAAC----CATCTTGAACCCCTAGACCCTCATCTTGGACCTCCAGCCCCTGTGACTC--------------TCCCCGAGCTCCTGCACCTCCAGCCCATCTCCTGCCAGT-CACCCAAGGGAGGGGTCTGCCTCGCAATCCCAGAGACGACTCAGACAGATGGAGGCGCGTGCAGCCGGCT--------------------GGCCCCCTGCCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     180283 492 +    290775 CTCACCACTACCTTGCTG-TTTGTTATGATAAATAAACTAGAGCTCTCAAGTCTCTCAAAAT--TTTCCTCATTCTGTCTCTATTCCTTTCAGCTCCAACCTAC-GCCAAGATTTTACCTTGTTACCATGGTAAATGTAAACCCCCAATCCAGCTCCCCACCTCTGACATTCCCTCCA---------CCCCCAA--CCCATTCCAGGGTTAGTTTACTCCCT-------CAGAGGATCAGTGTCTCCCAATACCTTAAATCCACCA-------------CCAGTTTCCCGAAACCCC-TACACTTCTGCGAGACTCCCG-----CAGCGGGGCAGAGGGGTCTGCCTTGCAGCATGCTTAAC----CATCTTGAACCCCTAGACCCTCATCTTGGACCTCTAGCCCCTGCGACTC--------------TCCCCGAGCTCCTGCACCTCCAGCCCATCTCCTGCCAGT-CACACAAGGGAGGGGTCTGCCTCGCAATCCCAGAGACGACTCAGACAGATGGAGGCGCGTGCAGCTGGCT--------------------GGCCCCCTGCCCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2639013 492 -   3067355 CTCACCACTACCTTGCTG-TTTGTTATGATAAATAAACTAGAGCTCTCAAGTCTCTCAAAAT--TTTCCTCATTCTGTCTCTATTCCTTTCAGCTCCAACCTAC-GCCAAGACTTTACCTTGTTACCATGGTAAATGTAAACCCCCAATCCAGCTCCCCACCTCTGACATTCCTTCCA---------CCCCCAA--CCCATTCCAGGGTTAGTTTACTCCCT-------CAGAGGATCAGTGTCTCCCAATACCTTAAATCCACCA-------------CCAGTTTCCCGAAACCCC-TACACTTCTGCGAGACTCCCG-----CAGCGGGGCAGAAGGGTCTGCCTTGCAGCATGCTTAAC----CATCTTGAACCCCTAGACCCTCATCTTGGACCTCCAGCCCCTGCGACTC--------------TCCCCGAGCTCCTGCACCTCCAGCCCATCTCCTGCCAGT-CACACAAGGGAGGGGTCTGCCTCGCAATCCCAGAGACGACTCAGACAGATGGAGGCGCGTGCAGCTGGCT--------------------GGCCCCCTGCCCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223         17 491 +    132061 CTCATGACTACCTTGCTG-TTTGTTATGATAAATAAACTAGAGCTCTCAAGTCTCTCAAAAT--TTTCCTCATTCTGTCCCTATTCCTTCCAGCTCCAACCTAC-GCCAAGATTTTACCTTGTTACCATGGTAAATGTAAACCCCCAATCCAACTCTCCACCTCTGACATTCCCTCCA---------CCCCCAA--CCCATTCCAGGGTTAGTTTACTCCCT-------CAGAGGATCAGGGTCTCCTAATATCTTAAATCCACCA-------------CCAGTTTCCCCAAACCCC-GACACTTCTGCGAAACTCCCG-----CAGCGGGGTGGAAGGGTCTG-CTTGCAGCATGCTTAAC----GATCTTGAACCCCTAGACCCTCATCTTGGACCTCCAGCCCCTGCGACTC--------------TCCCCAAGCTCCAGCGCTCCCAGCCCATCTCCTGCCAGT-CACACAAGGGAGGGGTCTGCCTCGAAATCCCAGAGGCGACTCAGACAGATGGAGGCGCGCGCAGCTGGCT--------------------GGCCCCCTGCCCC
i calJac3.chrUn_GL286223   n 21744 C 0
s saiBol1.JH378357           227712 491 -    242197 CTCACGGCCACCTTGTTG-TTTGTTATGATAAATAAACTAGAGCTTTCAAGTCTCTCAAAAT--TTTCCTCATTCTGTCCCTATTCCTTCCAGCTCCAACCTAC-GCCAAGATTTTACCTTGTTACCATGGTAAATGTAAACCCCCAATCCAGCTCCCCACCTCTGACATTCCCTCCA---------CCCCCAA--CCCATTTCAGGGTTAGTTTACTCCCT-------CAGAGGATCAGGGTCTGCTAATATCTTAAATCCACCA-------------CCAGTTTCCCC-AACCCC-GACACTTCCGCGAAACTCCCG-----CAGCGGGGCAGAAGGGTCTGCCTTGCAGCATGCTTAAG----CATCTTGAACCCCTAGACCCACATCTTGGACCTCCAGCCCCTGCGACTC--------------TCCCCAAGCTCCAGCGCCCCCAGCCCATCTCCTGCCAGT-CACACAAGGGAGGGGTCTGCCTCGCAATCCCAGAGGCGACTCAGACAGATGGAGGCGCGCGCAGCGGGCT--------------------GGCCCCCTGCCCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     221411 491 -   1771730 CTCACAGCTACCTTGCTG-TTTGTTATGATAAATAAACTAGAGCTTTCAAGTCTCTCAAAAT--TTTCCTCATTCTGCCCCTATTCCTTCCAGCTCCAACCTAC-GCCAAGATTTTACCTTGTTACCATGGTAAATGTAAACCCCCAATCCAGCTCCCCACCTCTGACGTTCCCTCCA---------CCCCCAA--CTCATTCCAGGGTTAGTTTACTCCCT-------CAGAGGATCAGGGTCTGCTAATATCTTAAATCCACCA-------------CCCGTTTCCCC-AACCCC-GACACTTCCGCGAAACTCCCG-----CAGCAGGGCAGAAGGGTCTGCCTTGCAGCATGCTTAAC----CGTCTTGAACCCCTAGACCCTCATCTTGGACCTCCGGCCCCTGCGACTC--------------TCCCCAAGCTCCAGCGCCCCCAGCCCATCTCCTGCCAGT-CACACAAGGGAGGGTTCTGCCTCGCAATCCCAGAGGCGACTCAGACAGATGGAGGCGCGCGCAGCGGGCT--------------------GGCCCCCTGCCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     303411 512 -    457564 CTCACGGCTACCTTGCTG-TTTGTTATGATAAATAAACTAGAGCTCTCAAGTCTCTCAAAAT--TTTCCTCATTCTGTCCCTGTTCCTTCCAGCTCCAACCTAC-GCCAAGATTTTACCTTGTTACCATGGTAAATGTAAACCCCCAATCCAGCTCCCCACCTCTGACATTCCCTCCA---------CCCCCAA--CCCATTCCAGGGTTAGTCTACTCCCT-------CAGAGGATCAGGGTCTGCTAATATCTTAAATCCACCA-------------CCAGTTTCCCCGAACCCC-GACACTTCCGCGAAACTCCCG-----CAGCGGGGCAGAAGGGTCTGCCTTGCAGCATGCTTAAC----CATCTTGAACCCCTAGACCCTCATTTTGGACCTCCAGCCTCTGCGACTA--------------TCCCCAAGCTCCAGCGCCCCCAGCCCATCTCCTGCCAGT-CACACAAGGGAGGGGTCTGCCTCGAAATCCCAGAGGCGACTCAGACAGATGGAGGCGCGCGCAGCGGGCTGgccccctgccccgcaggccggccccctgcccc
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               106635 495 + 123392446 CTCACAGCTACCTTGCTG-TTTGTTGTGATAAATAAACCAGAGCTCTCAAATCCCTCAAAAT--TTTCCTGATTCTGTCCCTATTCCTTCCAGCCCCAACCTAC-GCCAAGA-TTTACCTTGTTGCCATGGTAAACGTAAACCCCTGATCCAGCTTTCCACTTCTGACAATCCCTCCA---------CCCCCAA--CCCATCCCAGGGTTAGTTTACTCCCC-------CAGAGGATCAGGATCGGCCACTACCCTAAATCCATCA-----------------------CAGCCCCCAGGCACTTCCATGAGTCTCCTG-----CAGCGGGGCAGAAGGTGCTGCCTAGCAGCGTGATTGACTTGACGTCTTCAACCTCTAGACCCTCATCTTGAACCTCCAGCCCCTGCGACTCTCCCCAAGCTCCTCTCCCCAAGCTCCGGCACCACCAGCCTACCTCCTGCTAGT-CACACATGGGAGGGGCCTGCCCTGCAATCCCAGAGGCGACTCATACCGA----GCCCCACGGAGCTGGCA--------------------GGCCCCCTG-CCC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     600734 502 +    730504 CTCACAGCTACCTTG-TG-TTTGTTGTGCTAAATAAACTAGAGCTCTCAGGTCCCTCAAAAT--TTTCCTGATTCTGTCCCTATTCCTTCCAGCCCCAACCTAC-GCCAAGA-TTTACCTTGTTGCCATGGTAAATGTAAAACCCTGATCCAGCTTCCCACTTCTGACAATCCCTCCAC--------CCCCCAA--CCCATCCCAGGGTTAGTTTGCTCCCT-------CAGAGGATCAGGATGGGCTACTACCCTAAATCAATCACCTAAATCCGTCACCGGTTTCCCCAACCCCCAGGCACTTCCATGAGTCTTCTA-----TAGCCGGGCAGAAGGGGCTGCCCAGCAGCGTGATTAAC----CATCTTGAACCTCTAGACCCTCGTCTTGAACCTCCAGCCCCTGCGACGCT-------------TTCCCAAGCTCCTGCACCCCCAGCCCATCTCCTGCTAGT-CACACATGGGAGGGGTCTGCCTTGCAATCCCAGAGGCGACTCAGACTGA----GGCCCACGTAGCTGGCT--------------------GGCCCCCTGCCCC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           115150 482 +  18854210 CTCACGGCTACCTTGGTG-TTTGTTGTGATAAATAAACTACAGCTCTCAAGTCCCTCAAAAT--TTTCCTCATTCTTTCCCTATTCCTTCCAGCCCCAACCGAC-ACCAAGA-TTTACCTTGTTTCCATGGTCAATGTAAA-CCCTGATCTAGTTTCCCATTTCTGACAATCCCTCCACCACCAGCACCCCGAC--CCTATCCCAGGGTTAGTTTACTCCCCGGGAAGATGGAGGATCAGGAT---CCACT------------------------------GGTTTCCCCACCCCCCAGGCACTTCCCTGAGTCTCCTG-----CAGTGGGGCAGAGGGGTCTGCCTAGCAGTGTGATTAAAC---CATCTTGAACCTCTAGACCCTCATCTTGAACCTCCAG-TCTGGCGACTC--------------TCCCCAAGCTCCTGCACC-TCAGCCTCTCTCCTACTAGTCCACACATGAGAGGGGTCTACCTTGCAATCCCAGAGGCGACTCAAACTGA----GGCGTGCATAGCTGGCT--------------------GGCCCCCGT-CCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57935694 397 -  94987271 -----CTTTACCTTGCTG-TTTGTTTTGACAGATAAAGTAGAGCCCTCTTGCCTCTCTAAATCCTTCCCCCCTTCTCTCCATATTCCTTTCAGCCCCAACCTAC-GCCAAGA-TTTACCTTGTTACCATGGTAAATGTAAACCCCTGAGCCAGCTGCCCACCTCTGACGTCCCTTCCAG--------CCCCCAA--CCCTGGCCAGGGATAGCTTACT---T-------TAGAGGATCAG------------------------CA-------------C------CTAAGACCCCC-ACCACTTCTGTGAATCTCCTA-----CTGCC-TTCAAGAGAGTCGGCCTT------------------CAG--------------------------------AGCCACTGAGA-TA--------------TCCCAAAGCTCCCGCACCTCCTGTGCGTCTCCAACCAGT-CACTCTCGGGAGGGGTCTGCTTCACAGTCCCAAAGAGGATCCATA---------GCCCTCGCCTCCCACC--------------------A--CCCCGGCCAC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26232617 436 +  26524999 CGCCCAGCTACCCTGTTG-TTTTCTGCGATAAATAA---AGAGCACTCAAGTTCCCCAAAAT--GTTTGGTGTTCAGTC--TGTTTCTTCTAGTTCCAACCTGCTGCCAAGA-TCCACCTTATTACCACGGTAAATGGAAA-----------GCCCCCCACCTCTGACACCTCCTCCG---------TCCCCAGACCCCATTCTAGGGTCAGTTTACTCCC--------CAGAAGATCAGGCTCGGCTTGGACCCTAAATCCATCA-------------CCAGCTCCCCCAGCATCC-CCCACCCCCAC----TTCCCAGCGTTCTGGGGAGCAGGAGGCTCTGCCTCCCGTCTTGACCAAC----C-TCGTGCACCCCCAGACCCTCATCTTGACCCTCCAGCCCCTGTGACTG--------------TCCCCAGGCTCCCG--------------------CCAGT-CAGACGTGGGAGGGGTCCTTGTCGCAGTCGCAGCAGTCGCTGGGACCGA-----------------------------------------GGCCCCCCGCCCC
i canFam3.chr35            C 0 I 940
e dasNov3.JH582591            42065 4990 +    102524 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=7172880.000000
s hg38.chr6_GL000254v2_alt   892838 483 +   4827813 GC---AAGCCCCCACCTCCCACCCACCCCCATGTCCAGGGCTACCTTGCTGTCGTGGTGGATGAGCTTGAGCTCATAGTCCGGCAGGATGTCCCTGCGGCTATTCACGTCCTCCAGCGCCATCTCCACCGCGGGCTGGCAGGCCTGGCCCCCTGGCCAGCCCCCGCTCATGGGAAACAGTGCCCCGATGTACACTGCGCGCCGTTCTGAGGAGGGGTGCGGGGGGACCCGCGAGTGAGGCCGCGGGAGATGGGGGGAGTGGGAGGCCCACACCGGAGCCACCCCTGCCGCCATCACAACCAGAAGCGGCAGTGGCCACCCCACCCGGGCAAAAGGGGCCCCGGGCCCCATGGCGTGG-GGGGCAGGGGTAGCTGTTGGGGAG-CGTTAGGAGCTCAGGGGGGACACTTTTCCTGGGGAGGGCTGCTAAGAGGGTGCCGGGGAGGC-GCCTCCA-TCCCTGA-TTTTGTGGGGAGG-AGGGGGCGAGGGCCCC
s panTro5.chr6             29855607 483 + 175400573 GC---AAGCCCCCACCTCCCACCCACCCCCATGTCCAGGGCTACCTTGCTGTCGTGGTGGATGAGCTTGAGCTCATAGTCCGGCAGGATGTCCCTGCGGCTATTCACGTCCTCCAGCGCCATCTCCACCGCGGGCTGGCAGGCCTGGCCCCCTGGCCAGCCCCCGCTCATGGGAAACAGTGCCCCGATGTACACTGCGCGCCGTTCTGAGGAGGGGTGCGGGGGGACCCGCGGGTGAGGCCGCGGGAGATGGGGGGAGTGGGAGGCCCACACCGGAGCCACCCCTGCCGCCATCACAACCAGAAGCGGCAGTGGCCACCCCACCCGGGCAAAAGGGGCCCCGGGCCCCATGGCGTGG-GGGGCAGGGGTAGCTGTTGGGGAG-CGTTAGGAGCTCAGGGGGGACACTTTTCCTGGGGAGGGCTGCTGAGAGGGTGCCGGAGAGGC-GCCTCCA-TCCCTGG-TTTTGTGGGGAGG-AGGGGGCGAGGGCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30089976 483 + 173848474 GC---AAGCCCCCACCTCCCACCCACCCCCATGTCCAGGGCTACCTTGCTGTCGTGGTGGATGAGCTTGAGCTCATAGTCCGGCAGGATGTCCCTGCGGCTATTCACGTCCTCCAGCGCCATCTCCACCGCGGGCTGGCAGGCCTGGCCCCCTGGCCAGCCCCCGCTCATGGGAAACAGTGCCCCGATGTACACTGCGCGCCGTTCTGAGGAGGGGTGCGGGGGGACCCGCGGGTGAGGCCGCGGGAGATGGGGGGAGTGGGAGGCCCACACCGGAGCCACCCCTGCCGCCATCACAACCAGAAGCGGCAGTGGCCACCCCACCCGGGCAAAAGGGGCCCCGGGCCCCATGGCGTGG-GGGGCAGGGGTAGCTGTTGGGGAG-CGTTAGGAGCTCAGGGGGGACACTTTTCCTGGGGAGGGCTGCTGAGAGGGTGCCGGAGAGGC-GCCTCCA-TCCCTGG-TTTTGTGGGGAGG-AGGGGGCGAGGGCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5896598 482 +   6154872 GC---AAGCCCCCACCTCCCACCCACCCCCATGTCCAGGGCTACCTTGCTGTCGTGGTGGATGAGCTTGAGCTCATAGTCCGGCAGGATGTCCCTGCGGCTATTCACGTCCTCCAGCGCCATCTCCACCGCGGGCTGGCAGGCCTGGCCCCCTGGCCAGCCCCCGCTCATAGGAAACAGTGCCCCGATGTACACTGCGCGCCGTTCTGAGGAGGGGTGCGGGGGGACCCGCGGGTGAGGCCGCGGGAGATGGGGGGAGTGGGAGGCCCACACCGGAGCCACCCCTGCCGCCATCACAACCAGAAGCGGCAGTGGCCACCCCACCCGGGCAAAAGGGGCCCCGGGCCCCATGGCGT-G-GGGGCAGGGGTAGCTGTTGGGGAG-CGTTAGGAGCTCAGGGGGGACACTTTTCCTGGGGAGGGCTGCTGAGAGGGTGCCGGGGAGGC-GCCTCCA-TCCCTGG-TTTTGTGGGGAGG-AGGGGGCGAGGGCCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30086176 483 + 172585720 GC---AAGCCCCCACCTCCCACCCACCCCCATGTCCAGGGCTACCTTGCTGTCGTGGTGGATGAGCTTGAGCTCATAGTCCGGCAGGATGTCCCTGCGGCTATTCACGTCCTCCAGCGCCATCTCCACCGCGGGCTGGCAGGCCTGGCCCCCTGGCCAGCCCCCACTCATGGGAAACAGTGCCCCGATGTACACTGCGCGCCGTTCTGAGGAGGGGTGCGGGGGGACCCGTGGGTGAGGCCGCGGAAGATGGGGGGAGTGGGAGGCCCACACCGGAGCCACCCCTGCCGCCATCACAACCAAAAGCGGCAGTGGCCACCCCACCCGCGGAAAAGGGGCCCCTGGCCCCATGGCGTGG-GGGGCAGGGGTAGCTGTTGGGGAG-CGGAAGGAGCTCAGGGGGGACACTTTTCCCGGGGAGGGCTGCTGAGAGGGTGCCGGGGAGGC-GCCTCCA-TCCCTGG-TTTTGTGGGGAGG-AGGGGGCGAGGGCCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29748719 483 - 170955103 GC---AAGCCCCCACCTCCCACCCACCCCCATGTCCAGGGCTACCTTGCTGTCGTGGTGGATGAGCTTGAGCTCATAGTCCGGCAGGATGTCCCTGCGGCTATTCACGTCCTCCAGCGCCATCTCCACCGCGGGCTGGCAGGCCTGGCCCCCTGGCCAGCCCCCACTCATGGGAAACAGTGCCCCGATGTACACTGCGCGCCGTTCTGAGGAGGGGTGCGGGGGGACCCGTGGGTGAGGCCGCGGAAGATGGGGGGAGTGGGAGGCCCACACCGGAGCCACCCCTGCCGCCATCACAACCAAAAGCGGCAGTGGCCACCCCACCCGCGGAAAAGGGGCCCCTGGCCCCATGGCGTGG-GGGGCAGGGGTAGCTGTTGGGGAG-CGGAAGGAGCTCAGGGGGGACACTTTTCCCGGGGAGGGCTGCTGAGAGGGTGCCGGGGAGGC-GCCTCCA-TCCCTGG-TTTTGTGGGGAGG-AGGGGGCGAGGGCCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2797399 483 -   2996164 GC---AAGCCCCCACCTCCCACCCACCCCCATGTCCAGGGCTACCTTGCTGTCGTGGTGGATGAGCTTGAGCTCATAGTCCGGCAGGATGTCCCTGCGGCTATTCACGTCCTCCAGCGCCATCTCCACCGCGGGCTGGCAGGCCTGGCCCCCTGGCCAGCCCCCACTCATGGGAAACAGTGCCCCGATGTACACTGCGCGCCGTTCTGAGGAGGGGTGCGGGGGGACCCGTGGGTGAGGCCGCGGAAGATGGGGGGAGTGGGAGGCCCACACCGGAGCCACCCCTGCCGCCATCACAACCAGAAGCGGCAGTGGCCACCCCACCCGCGGAAAAGGGGCCCCTGGCCCCATGGCGTGG-GGGGCAGGGGTAGCTGTTGGGGAG-CGGAAGGAGCTCAGGGGGGACACTTTTCCCGGGGAGGGCTGCTGAGAGGGTGCCGGGGAGGC-GCCTCCA-TCCCTGG-TTTTGTGGGGAGG-AGGGGGCGAGGGCCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     548474 483 +    766320 GC---AAGCCCCCACCTCCCACCCACCCCCATGTCCAGGGCTACCTTGCTGTCGTGGTGGATGAGCTTGAGCTCATAGTCCGGCAGGATGTCCCTGCGGCTATTCACGTCCTCCAGCGCCATCTCCACCGCGGGCTGGCAGGCCTGGCCCCCTGGCCAGCCCCCACTCATGGGAAACAGTGCCCCGATGTACACTGCGCGCCGTTCTGAGGAGGGGTGCGGGGGGACCCGTGGGTGAGGCCGCGGAAGATGGGGGGAGTGGGAGGCCCACACCGGAGCCACCCCTGCCGCCATCACAACCAGAAGCGGCAGTGGCCACCCCACCCGCGGAAAAGGGGCCCCTGGCCCCATAGTGTGG-GGGGCAGGGGTAGCTGTTGGGGAG-CGGAAGGAGCTCAGGGGGGACACTTTTCCCGGGGAGGGCTGCTGAGAGGGTGCCGGGGAGGC-GCCTCCA-TCCCTGG-TTTTGTGGGGAGG-AGGGGGCGAGGGCCCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29004568 483 -  71996105 GC---AAGCCCCCACCTCCCACCCACCCCCATGTCCAGGGCTACCTTGCTGTCGTGGTGGATGAGCTTGAGCTCATAGTCCGGCAGGATGTCCCTGCGGCTATTCACGTCCTCCAGCGCCATCTCCACCGCGGGCTGGCAGGCCTGGCCCCCTGGCCAGCCCCCACTCATGGGAAACAGTGCCCCGATGTACACTGCGCGCCGTTCTGAGGAGGGGTGCGGGGGGACCCGTGGGTGAGGCCGCGGAAGATGGGGGGAGTGGGAGGCCCACACCGGAGCCACCCCTGCCGCCATCACAACCAGAAGCGGCAGTGGCCACCCCACCCGCGGAAAAGGGGCCCCTGGCCCCATGGCGTGG-GGGGCAGGGGTAGCTGTTGGGGAG-CGGAAGGAGCTCAGGGGGGACACTTTTCCCGGGGAGGGCTGCTGAGAGGGTGCCGGGGAGGC-GCCTCCA-TCCCTGG-TTTTGTGGGGAGG-AGGGGGCGAGGGCCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     180775 483 +    290775 GC---AAGCCCCCACCTCCCACCCACCCCCATGTCCAGGGCTACCTTGCTGTCGTGGTGGATGAGCTTGAGCTCATAGTCCGGCAGGATGTCCCTGCGGCTATTCACGTCCTCCAGCGCCATCTCCACCGCGGGCTGGCAGGCCTGGCCCCCTGGCCAGCCCCCACTCATGGGAAACAGTGCCCCGATGTACACTGCGCGCCGTTCTGAGGAGGGGTGCGGGGGGACCCGTGGGTGAGGCCGCGGAAGATGGGGGGAGTGGGAGGCCCACACCGGAGCCACCCCTGCCGCCATCACAACCAGAAGCGGCAGTGGCCACCCCACCCGCGGAAAAGGGGCCCCTGGCCCCATAGTGTGG-GGGGCAGGGGTAGCTGTTGGGGAG-CGGAAGGAGCTCAGGGGGGACACTTTTCCCGGGGAGGGCTGCTGAGAGGGTGCCGGGGAGGC-GCCTCCA-TCCCTGG-TTTTGTGGGGAGG-AGGGGGCGAGGGCCCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2639505 483 -   3067355 GC---AAACCCCCACCTCCCACCCACCCCCATGTCCAGGGCTACCTTGCTGTCGTGGTGGATGAGCTTGAGCTCATAGTCCGGCAGGATGTCCCTGCGGCTATTCACGTCCTCCAGCGCCATCTCCACCGCGGGCTGGCAGGCCTGGCCCCCTGGCCAGCCCCCACTCATGGGAAACAGTGCCCCGATGTACACTGCGCGCCGTTCTGAGGAGGGGTGCGGGGGAACCCGCGGGTGAGGCCGCGGAAGATGGGGGGAGTGTGAGGCCCATACCGGAGCCACCCCTGCCGCCATCACAACCAGAAGCAGCAGTGGCCACCCCACCCGCGGAAAAGGGGCCCCTGGCCCCATGGCGTGG-GGGGCAGGGGTAGCTGTTGGGGAG-CGGAAGGAGCTCAGGGGGGACACTTTTCCCGGGGAGGGCTGCTGAGAGGGTGCCGGGGAGGC-GCCTCCA-TCCCTGG-TTTTGTGGGGAGG-AGGGGGCGAGGGCCCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223        508 486 +    132061 GC---AGGCCCCCACCTCCCACCCA-CCCCATGTCCAGGGCTACCTTGCTGTCGTGGTGGATGAGCTTGAGCTCATAGTCCGGCAGGATGTCCCTGCGGCTATTCACGTCCTCCAGCGCCATCTCCACCGCGGGCTGGCAGGCCTGGCCCCCTGGCCAGCCCCCGCTCATTGGAAACAGCGCCCCGATGTACACTGCGCGCCGTTCTGAGGAGGGGTGAGGGGGGACCCGCGGGTGAGGCCGCGGGAGATGGGGGGAATGGGAGGCCCACACCGGAGCCACCCCTGCCGCCATCACAACCAGAAGAGGCAGCGGCCACCCCACCCGGGCAAAAGGGGCCCCCGGCCCCATGACGTGA-GGGGCAAGTATATCTGTTGGAAAG-CGGAAGGAGCTCAGAGAGGACACTTTTCCAGGGGAGGGTTGCTGAGGGGTTGCTGGGGATGCAGCCTCCATTCCCTGGTTTTTGTGAGGAGGAAGGGGGCGAGGGCCCC
i calJac3.chrUn_GL286223   C 0 M 2011
s saiBol1.JH378357           228203 482 -    242197 AC---AGGCCCCCACCTCCCACCCA-CCCCATGTCCAGGACTACCTTGCTGTCGTGGTGGATGAGCTTGAGCTCATAGTCCGGCAGGATGTCCCTGCGGCTATTCACGTCCTCCAGCGCCATCTCCACCGCGGGCTGGCAGGCCTGGCCCCCTGGCCAGCCCCCGCTCATGGGAAACAGCGCCCCGATGTACACTGCGCGCCGTTCTGAGGAGGGGTGCGGGGGGACCCGCGGGTGAGGCCGCGGGAGATGGGGGGAGTGGGAGGCCCACACCGGGGCCACCCCTGCCGCCATCATAACCAGAAGAGGCAGCAGCCACCCCACCCGGGCAAAAGGGGCCCCCGGCCCCATGGCGTGG-GGGGCAGGGGTAGCTGTTGGGGAG-CGGAAAGAGCTCAGGGGGGACACTTTTCCCGGGGAGGGCTGCTGAGGGGATGCCGGGGAGGC-GCCTCCA-TCCCTGG-TTTTGTGGGGAGG-AGGGGGCGAGGGCCCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     221902 482 -   1771730 GC---AGTCCCCCACCTCCCACCCA-CCCCATGTCCAGGGCTACCTTGCTGTCGTGGTGAATGAGCTTGAGCTCATAGTCCGGCAGGATGTCCCTGCGGCTATTCACGTCCTCCAGCGCCATCTCCACCGCGGGCTGGCAGGCCTGGCCCCCTGGCCAGCCCCCGCTCATGGGAAACAGCGCCCCGATGTACACTGCGCGCCGTTCTGAGGAGGGGTGCGGGGGGACCCGCGGGTGAGGCCGAGAGAGATGGGGGGAGTGGGAGGCCCACACCGGAGCCACCCCTGCCGCCATCATAACCAGAAGAGGCAGTGGCCACCCCACCCGGGCAAAAGGGGCCCCCGGCCCCATGGCGTGG-GGGGCAGGGGTAGCTGTTGGGGAG-CGGAAAGAGCTCAGGGGGGACACTTTTCCCGGGGAGGGCTGCTGAGGGGGTGCCGGGGAGGC-GCCTCCA-TCCCTGG-TTTTGTGGGGAGG-AGGGGGCGAGGGCCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     303923 482 -    457564 gc---aggccccCACCTCCCACCCA-CCCCATGTCCAGGGCTACCTTGCTGTCGTGGTGGATGAGCTTGAGCTCATAGTCCGGCAGGATGTCCCTGCGGCTATTCACGTCCTCCAGCGCCATCTCCACCGCGGGCTGGCAGGCCTGGCCCCCTGGCCAGCCCCCGCTCATGGGAAACAGCGCCCCGATGTACACTGCGCGCCGTTCTGAGGAGGGGTGCGGGGGGACCCGCGGGTGAGGCCGCGGGAGATGGGGGGAGTGGGAGGCCCACGCCGGAGCCACCCCTGCCGCCATCACAACCAGAAGAGGCAGCGGCCACCCCACCCGGGCAAAAGGGGCCCCCGGCCCCATGGCGTGG-GGGGCAGGGGTAACTGTTGGGGAG-CGGAAAGAGCTCAGGGGGGACACTTTTCCCGGGGAGGGCTGCTGAGGGGGTGCCGGGGAGGC-GCCTCCA-TCCCTGG-TTTTGTGGGGAGG-AGGGGGCGAGGGCCCC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               107130 479 + 123392446 CC---AAGCGCCCACCCCC--ACCACTCCCATGTCCAGGGCTACCTTGCTGTCGTGGTGGATGAGCTTGAGCTCATAGTCCGGCAGGATGTCCCTGCGGCTATTCACGTCCTCCAGCGCCATCTCCACCGCAGGCTGGCAGGCCTGGCCCCCTGGCCAGCCCCCGCTCATGGGAAACAGCGCCCCGATGTACACTGCGCGCCGTTCTGAGGAGGGGTGCGGGGGGACCCGCGGGTGAGGCCGCGGGAGATGGGGGGAGTGGGAGGCCCACACCGGAGCTACCCCTGCCGCCATCACCAGCAGAAGCGGCAGTGGCCACCCCACCCGGGGAGAGGGGGCCCCCGGACCCATGGC--TG-GGGGCAGGGGTAGCTGCTTGGGGA-GGGGAGGCGCTCAAGGGGGACACTTTTCCTGGGGAGGCCTGCTGAGGGGGTGTCGGGGAGGC-GCCTCCA-TCCCCGG-TTTTGTGGGGAGG-CGGGGGCTAGGGCCCC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     601236 482 +    730504 CC---AAACCCCTACCTCCCACCCACTCCCATATCCAGGGCTACCTTGCTGTCGTGGTGGATGAGCTTGAGCTCATAGTCCGGCAGGATGTCCCTGCGGCTATTCACGTCCTCCAGCGCCATCTCCACCGCGGGCTGGCAGGCCTGGCCCCCTGGCCAGCCCCCGCTCATGGGAAACAGCGCCCCGATGTACACTGCGCGCCGTTCTGAGGAGGGGTGCGGGGGGACCCGCGGGTGAGGCCGCGGGAGATGGGGGGAGTGGGAGGCCCACACCGGAGCCACCCCTGCCGCCATCACCACCAGAAGCGGCAGTGGCCACCCCACCCGGGGAGAGGGGGCCCCCGGACCCATGGC--TG-GGGGCTGGGGTAGCTGCTTGGAGAGGGGGAAGCGCTCAAGGGGGACACTTTTCCTGGGGAGGGCTGGTGAGGGGGTGTCGGGGAGGC-GCCTCCA-TCCCTGG-TTTTGTGGCGAGG-AGGGGGCTAGGGCCCC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           115632 485 +  18854210 CTGCAAAACCCCCATCTCCCACCCACTCCCAAGTCCAGGACTACCTTGCTGTCGTGGTGGATGAGCTTGAGCTCATAGTCCGGCAGGATGTCCCTGCGGCTATTCACGTCCTCCAGCGCCATCTCCACCGCGGGCTGGCAGGCCTGGCCCCCTGGCCAGCCCCCGCTCATGGGAAACAGCGCCCCGATGTACACTGCGCGCCGTTCTGAGGAGGGGTGTGGGGGCACCCGCGGGTGAGGCCGCGGGAGATGAGGGGAGTGAGAGGCCCACATCGGAGCCACCCCTGCCGCCATCACCACCAAAAGCGGCAGTGGCCACCCCACCCGGGGAGAGGGGGCCCCCGGACCCATGGCG-TG-GGGGCAGGGGTAGTTGCTGGGGAG-GGGAAGGAGCTCAGGGGGGACACTTTTCCTGGGGAGGGCTGCTGAGGGGGTGTCGGGGAGGC-GCCTCCA-TCCCTGG-TTCTGTGGGGAGG-AGGGGGCTAGGGCCCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57936091 464 -  94987271 GC---TGTCCCTCACCCC--------------------GACTACCTTGCTGTCGTGGTGGATAAGCTTGAGCTCGTAGTCCGGCAGGATGTCTCTGCGGCTGTTAACGTCCTCCAGCGCCATCTCCACCGCAGGCTGGCAGGCCTGGCCCCCCGGCCAGCCCCCGCTCATGGGAAACAGCGCCCCGATGTATACTGCACGCCGTTCTGAGGAGGGGTGCGGGGGGACCCTCGGGTGAGGCCGCGGGAGATGAGGGGAGTGAGAGGCCCACACCGGAGCCACCCCAGCCGCCATCACCAGCAGAAGAGGCAGCGGCCACCCCACCGGGGTACAGGGTCCCCCCGGGCCCATGGCGAGGAGGGGCGGGGGCGGCCTCCTTGGGG-TGGGGGCAGCTCAGGGGGGACACTTCTTCTGGGGAAGGCTTCTGGGAGGGCGTCGGGGAGGC-GCCTCCA-TCCCCGG-TCTCATTGGGGAG-GAGGGGCCAGAGCCCG
i mm10.chr17               C 0 C 0
e dasNov3.JH582591            42065 4990 +    102524 I
e canFam3.chr35            26233053 940 +  26524999 I
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=417626.000000
s hg38.chr6_GL000254v2_alt   893321 32 +   4827813 GGAGAAGCAGGGAAGGTTGGCTTCCTACGGCC
s panTro5.chr6             29856090 32 + 175400573 GGAGAAGCAGGGAAGGTTGGCTTCCTACGGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30090459 32 + 173848474 GGAGAAGCAGGGAAGGTTGGCTTCCTACGGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5897080 32 +   6154872 GGAGAAGCAGGGAAGGTTGGCTTCCTACGGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30086659 32 + 172585720 GGAGAAGCAGGGAAGGTTGGCTTCCTACAGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29749202 32 - 170955103 GGAGAAGCAGGGAAGGTTGGCTTCCTACAGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2797882 32 -   2996164 GGAGAAGCAGGGAAGGTTGGCTTCCTACAGCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     548957 32 +    766320 GGGGAAGCAGGGAAGGTTGGCTTCCTACAGCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29005051 32 -  71996105 GGAGAAGCAGGGAAGGTTGGCTTCCTACAGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     181258 32 +    290775 GGAGAAGCAGGGAAGGTTGGCTTCCTACAGCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2639988 32 -   3067355 GGAGAAGCAGGGAAGGTTGGCTTCCTACAGCC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           228685 32 -    242197 GGAGAAGCAGGGAAGGTTGGCTTCCTACGGCC
i saiBol1.JH378357         C 0 M 256
s cebCap1.NW_016107755v1     222384 32 -   1771730 GGAGAAGCAGGGAAGGTTGGCTTCCTACGgcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     304405 32 -    457564 GGAGAAGCAGGGAAGGTTGGCTTCCTACGgcc
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               107609 32 + 123392446 GGAGAAGCAGGGAAGGTTGGCTCCCTCCAGAT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     601718 32 +    730504 GGAGAAGCAGGGAAGGTTGGCTTCCTCCGGCC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           116117 32 +  18854210 GGAGAAGCAGGGAAGGTTGGCTTCCTACGGCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57936555 31 -  94987271 GGGAAGGCAGAGAC-GTGGGCTTCCTAGGGCC
i mm10.chr17               C 0 C 0
e dasNov3.JH582591            42065 4990 +    102524 I
e canFam3.chr35            26233053 940 +  26524999 I
e calJac3.chrUn_GL286223        994 2011 +    132061 M
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1331679.000000
s hg38.chr6_GL000254v2_alt   893353 128 +   4827813 CCCGCGGCTCT----------------CGCCACCGTCGCCGCCACCGCGGACTCTCCTCGCGGACTGACTGACCGACggaggggaggaggaggagcaggaggGAGATGTGGGGCTGGGAGGGGGCTCTGACGTCACGGGCGGCG
s panTro5.chr6             29856122 128 + 175400573 CCCGCGGCTCT----------------CGCCACCGTCGCCGCCACCGCGGACTCTCCTCGCGGACTGACTGACCGACggaggggaggaggaggagcaggaggGAGATGTGGGGCTGGGAGGGGGCTCTGACGTCACGGGCGGCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30090491 128 + 173848474 CCCGCGGCTCT----------------CGCCACCGTCGCCGCCACCGCGGACTCTCCTCGCGGACTGACTGACCGACggaggggaggaggaggagcaggaggGAGATGTGGGGCTGGGAGGGGGCTCTGACGTCACGGGCGGCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5897112 128 +   6154872 CCCGCGGCTCT----------------GGCCACCGTCGCCGCCACCGCGGACTCTCCTCGCGGACTGACTGACCGACggaggggaggaggaggagcaggaggGAGATGTGGGGCTGGGAGGGGGCTCTGACGTCACGGGCGGCG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30086691 128 + 172585720 CCCGCGGCTCT----------------CGCCACCGTCGCCGCCACCGCGGACTCTCCTCGCGGACTGACTGACCGACggaggggaggaggaggaggaggaggGAGATGTGGGGCTGGGAGGGGGCTCTGACGTCACGGACGGCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29749234 128 - 170955103 CCCGCGGCTCT----------------CGCCACCGTCGCCGCCACCGCGGACTCTCCTCGCGGACTGACTGACCGACggaggggaggaggaggaggaggaggGAGATGTGGGGCTGGGAGGGGGCTCTGACGTCACGGACGGCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2797914 124 -   2996164 CCCGCGGCTCT----------------CGCCACCGTCGCCGCCACCGCGGACTCTCCTCGCGGACTGACTGACCGACggaggggaggaggaggaggaggaggGAGATGTGGGGCTGGGAGG----TCTGACGTCACGGACGGCG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     548989 128 +    766320 CCCGCGGCTCT----------------CGCCACCGTCGCCGCCACCGCGGACTCTCCTCGCGGACTGACTGACCGACggaggggaggaggaggaggaggaggGAGATGTGGGGCTGGGAGGGGGCTCTGACGTCACGGATGGCG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29005083 128 -  71996105 CCCGCGGCTCT----------------CGCCACCGTCGCCGCCACCGCGGACTCTCCTCGCGGACTGACTGACCGACggaggggaggaggaggaggaggaggGAGATGTGGGGCTGGGAGGGGGCTCTGACGTCACGGACGGCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     181290 128 +    290775 CCCGCGGCTCT----------------CGCCACCGTCGCCGCCACCGCGGACTCTCCTCGCGGACTGACTGACCGACggaggggaggaggaggaggaggaggGAGATGTGGGGCTGGGAGGGGGCTCTGACGTCACGGATGGCG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2640020 128 -   3067355 CCCGCGGCTCT----------------CGCCACCGTCGCCGCCACCGCGGACTCTCCTCGCGGACTGACTGACCGACggaggggaggaggaggaggaggaggGAGATGTGGGGCTGGGAGGGGGCTCTGACGTCACGGACGGCG
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     222416 131 -   1771730 cccgcggctctcgctc----------ccgccaccgccgccgccaccgcGCACTCTCCTCGCGGACTGACTGACCGACggaggagaggaggaag---aggaggGAGATGTGGGGCTGGGAGGGGGCTCTGACGTCACgggcggcg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     304437 131 -    457564 cccgcggctctcgctc----------ccgccaccgccgccgccaccgcGGACTCTCCTCGCGGACTGACTGACCGACggaggggaggaggagg---aggaggGAGATGTGGGGCTGGGAGGGGGCTCTGACGTCACGGGCGGCG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               107641 116 + 123392446 CCCGCGGCTCTCACTC----------------------GCGCCACCGCGGACTCCCCTCGCGGACTGACTGACCGACGGAGGGGAGGAGG------AGGAGGGAGCTGCAGGGCCGGGCGGGGGCGCTGACGTCACGGGCGGCG
i micMur3.chr6             C 0 I 263
s proCoq1.NW_012152574v1     601750 128 +    730504 CCCGCGGCTCTCCCTC----------CCGCCACCGCCACCGCCACCGCGGACTCTCCTCGCGGACTGACTGACCGACggaggggaggagg------aggaggGAGCTGTGGGGCCGGGAGGGGGCTCTGACGTCACGGGCGGCG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           116149 135 +  18854210 CCCGCGGCTCGCTCccaccaccgccaccgccacagccaccgccaccgcGGACTCTCCTCGCGGACTGACTGACCGACTGAGG---GGAGG------CGGAGGGAGATGTTGAGCTGGGAGGGGGCTCTGACGTCACGGGCGGCG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57936586 107 -  94987271 -AAGAGACGCT----------------------CGCTCCCGCCACCGCGGACTCTCCTCGCCGACTGACCGACCGACAGAAGGG------------AGGAGGGAGAAAAGGAGCTAGGAGGGGGGCTTGACGTCACGGGCTG--
i mm10.chr17               C 0 C 0
e dasNov3.JH582591            42065 4990 +    102524 I
e canFam3.chr35            26233053 940 +  26524999 I
e saiBol1.JH378357           228717 256 -    242197 M
e calJac3.chrUn_GL286223        994 2011 +    132061 M
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=72003.000000
s hg38.chr6_GL000254v2_alt   893481 20 +   4827813 CGCGGCAGCGGGGGGTGGGG
s panTro5.chr6             29856250 20 + 175400573 CGCGGCAGCGGGGGGTGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30090619 20 + 173848474 AGCGGCAGCGGGGGATGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5897240 20 +   6154872 CGCGGCAGCGGGGGGTGGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30086819 19 + 172585720 CGCGGCAGCGGGGGGTGGG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29749362 20 - 170955103 CGCGGCAGCGGGGGGTGGGG
i macFas5.chr4             C 0 M 1374
s macNem1.NW_012011356v1    2798038 16 -   2996164 CGCGGCAA-GCGGGGTG---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     549117 20 +    766320 CGCGGCAGCGGGGGGGGGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29005211 20 -  71996105 CGCGGCAGCGGGGGGTGGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     181418  3 +    290775 CGC-----------------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2640148  9 -   3067355 CGCGGCAGC-----------
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     222547 20 -   1771730 cgcggcagcggggggtgggg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     304568 19 -    457564 CGCGGCAGC-GGGGTTGGGG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     601878 14 +    730504 AGC----GCAGGGGGT-GG-
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           116284 19 +  18854210 AGCGGCAGCggggggtggg-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               107757 263 + 123392446 I
e mm10.chr17               57936693  0 -  94987271 C
e dasNov3.JH582591            42065 4990 +    102524 I
e canFam3.chr35            26233053 940 +  26524999 I
e saiBol1.JH378357           228717 256 -    242197 M
e calJac3.chrUn_GL286223        994 2011 +    132061 M
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=114341.000000
s hg38.chr6_GL000254v2_alt   893501 43 +   4827813 GGGCGGG--------------------------------------------------CGGGAGCTGGGGAGGCAGGAAGGG------------------------------------------GGCGGGGAGGGA
s panTro5.chr6             29856270 43 + 175400573 GGGCGGG--------------------------------------------------CGGGAGCTGGGGAGGCAGGAAGGG------------------------------------------GGCGGGGAGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30090639 43 + 173848474 GGGCGGG--------------------------------------------------CGGGAGCTGGGGAGGCAGGAAGGG------------------------------------------GGCGGGGAGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5897260 43 +   6154872 GGGCGGG--------------------------------------------------CGGGAGCTGGGGAGGCAGGAAGGG------------------------------------------GGCGGGGAGGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30086838 43 + 172585720 GGGCGGG--------------------------------------------------CGGGAGCTGGGGAGGCAAGAAGGG------------------------------------------GGCGGGGAGGGA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1    2798054 37 -   2996164 ----GGG--------------------------------------------------CGGGCGACTGGGAGGCAAGAAGGG------------------------------------------G--GGCGGAGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     549137 43 +    766320 GGGCGGG--------------------------------------------------CGGGAGCTGGGGAGGCAAGAAGGG------------------------------------------GGCGGGGAGGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29005231 43 -  71996105 GGGCGGG--------------------------------------------------CGGGAGCTGGGGAGGCAAGAAGGG------------------------------------------GGCGGGGAGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     181421 60 +    290775 ------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGAGCGA---------------------------------------------------------------------
i manLeu1.NW_012099233v1   C 0 I 15
s colAng1.NW_012115566v1    2640157 43 -   3067355 --------------------------------------------------------------------------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------
i colAng1.NW_012115566v1   C 0 M 45
s cebCap1.NW_016107755v1     222567 43 -   1771730 gtgcggg--------------------------------------------------cgggagctggggaggcaggaaggg------------------------------------------ggcggggAGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     304587 40 -    457564 G---GGG--------------------------------------------------CGAGAACTGgggaggcaggaaggg------------------------------------------ggcggggaggga
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     601892 43 +    730504 GGGCGGG--------------------------------------------------CAGGCGACGGGGAGGGAGGAAGGG------------------------------------------GGCGGGGATGGA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           116303 43 +  18854210 gggcggg--------------------------------------------------caggagatgaggagggaggaaggg------------------------------------------ggcggggatgga
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57936693 14 -  94987271 -------------------------------------------------------------------------------GA------------------------------------------GGCGGGGATAGG
i mm10.chr17               C 0 C 0
e micMur3.chr6               107757 263 + 123392446 I
e dasNov3.JH582591            42065 4990 +    102524 I
e canFam3.chr35            26233053 940 +  26524999 I
e saiBol1.JH378357           228717 256 -    242197 M
e calJac3.chrUn_GL286223        994 2011 +    132061 M
e macFas5.chr4             29749382 1374 - 170955103 M
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=134049.000000
s hg38.chr6_GL000254v2_alt   893544 28 +   4827813 AGCG--AGCGCCGAGGTGGGAGCGACAGTC
s panTro5.chr6             29856313 28 + 175400573 AGCG--AGCGCCGAGGTGGGAGCGACAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30090682 28 + 173848474 AGCG--AGCGCCGAGGTGGGAGCGACAGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5897303 28 +   6154872 AGCG--AGCGCCGAGGTGGGAGCGACAGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30086881 28 + 172585720 AGCG--AGCGCCTTGGTGGGAGCGACAGTC
i rheMac8.chr4             C 0 I 10
s macNem1.NW_012011356v1    2798091 28 -   2996164 AGCG--AGCGCCTTGGTGGGAGCGACAGTC
i macNem1.NW_012011356v1   C 0 I 10
s cerAty1.NW_012002711v1     549180 28 +    766320 AGCG--AGCGCCTTGGTGGGAGCGACAGTC
i cerAty1.NW_012002711v1   C 0 I 10
s chlSab2.chr17            29005274 28 -  71996105 AGGG--AGCGCCTTGGTGGGAGCGACAGTC
i chlSab2.chr17            C 0 I 5
s cebCap1.NW_016107755v1     222610 28 -   1771730 AGCG--AGCGCCGAGGTGGGAGCGACAGTC
i cebCap1.NW_016107755v1   C 0 I 4
s aotNan1.NW_018509740v1     304627 28 -    457564 agcg--agcgccgaggtgggagcgacagtc
i aotNan1.NW_018509740v1   C 0 I 4
s proCoq1.NW_012152574v1     601935 27 +    730504 AGCG--AGCG-CGAGGTGGGAACGGCAGTC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           116346 28 +  18854210 agcgctagc--cgaggtgggaacctcagtc
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57936707 17 -  94987271 AGCC--AGTGCCGAGGCCC-----------
i mm10.chr17               C 0 C 0
e micMur3.chr6               107757 263 + 123392446 I
e dasNov3.JH582591            42065 4990 +    102524 I
e canFam3.chr35            26233053 940 +  26524999 I
e saiBol1.JH378357           228717 256 -    242197 M
e calJac3.chrUn_GL286223        994 2011 +    132061 M
e colAng1.NW_012115566v1    2640200 45 -   3067355 M
e manLeu1.NW_012099233v1     181481 15 +    290775 I
e macFas5.chr4             29749382 1374 - 170955103 M
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=42976.000000
s hg38.chr6_GL000254v2_alt   893572 6 +   4827813 GGAGGG
s panTro5.chr6             29856341 6 + 175400573 ggaggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30090710 6 + 173848474 ggaggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5897331 6 +   6154872 GGAGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30086919 6 + 172585720 GGAGGG
i rheMac8.chr4             I 10 C 0
s macNem1.NW_012011356v1    2798129 6 -   2996164 GGAGGG
i macNem1.NW_012011356v1   I 10 C 0
s cerAty1.NW_012002711v1     549218 6 +    766320 GGAGGG
i cerAty1.NW_012002711v1   I 10 C 0
s chlSab2.chr17            29005307 6 -  71996105 GGCGGG
i chlSab2.chr17            I 5 C 0
s manLeu1.NW_012099233v1     181496 6 +    290775 ggaggg
i manLeu1.NW_012099233v1   I 15 C 0
s colAng1.NW_012115566v1    2640245 6 -   3067355 NNNGGG
i colAng1.NW_012115566v1   M 45 C 0
s cebCap1.NW_016107755v1     222642 6 -   1771730 GAAGGG
i cebCap1.NW_016107755v1   I 4 C 0
s aotNan1.NW_018509740v1     304659 6 -    457564 ggaggg
i aotNan1.NW_018509740v1   I 4 C 0
s proCoq1.NW_012152574v1     601962 6 +    730504 AGAGGG
i proCoq1.NW_012152574v1   C 0 I 179
s otoGar3.GL873550           116374 6 +  18854210 agaagg
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57936724 6 -  94987271 gaaggg
i mm10.chr17               C 0 C 0
e micMur3.chr6               107757 263 + 123392446 I
e dasNov3.JH582591            42065 4990 +    102524 I
e canFam3.chr35            26233053 940 +  26524999 I
e saiBol1.JH378357           228717 256 -    242197 M
e calJac3.chrUn_GL286223        994 2011 +    132061 M
e macFas5.chr4             29749382 1374 - 170955103 M
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=17296.000000
s hg38.chr6_GL000254v2_alt   893578 4 +   4827813 GCGG
s panTro5.chr6             29856347 4 + 175400573 gcgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30090716 4 + 173848474 gcgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5897337 4 +   6154872 GCGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30086925 4 + 172585720 GAGG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1    2798135 4 -   2996164 GAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     549224 4 +    766320 GAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29005313 4 -  71996105 GAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     181502 4 +    290775 gagg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2640251 2 -   3067355 GA--
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     222648 4 -   1771730 GCGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     304665 4 -    457564 gcgg
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           116380 4 +  18854210 gagg
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57936730 4 -  94987271 gagg
i mm10.chr17               C 0 C 0
e micMur3.chr6               107757 263 + 123392446 I
e dasNov3.JH582591            42065 4990 +    102524 I
e proCoq1.NW_012152574v1     601968 179 +    730504 I
e canFam3.chr35            26233053 940 +  26524999 I
e saiBol1.JH378357           228717 256 -    242197 M
e calJac3.chrUn_GL286223        994 2011 +    132061 M
e macFas5.chr4             29749382 1374 - 170955103 M
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=50690.000000
s hg38.chr6_GL000254v2_alt   893582 12 +   4827813 GGAGGGGAGG-----------GG
s panTro5.chr6             29856351 23 + 175400573 ggaggggaggggaggggaggAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30090720 23 + 173848474 ggaggggaggggaggggaggAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5897341 17 +   6154872 GGAGGGGAGGGGAGG------GG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30086929 12 + 172585720 GGAGGGGAGA-----------GA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1    2798139 12 -   2996164 GGAGAGGAGG-----------GG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     549228 12 +    766320 GGAGAGGAGG-----------GG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29005317 12 -  71996105 GGAGAGGAGG-----------GG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     181506 12 +    290775 ggagaggagg-----------gg
i manLeu1.NW_012099233v1   C 0 C 0
s saiBol1.JH378357           228973 12 -    242197 GGAGGGGAGG-----------GA
i saiBol1.JH378357         M 256 C 0
s cebCap1.NW_016107755v1     222652 12 -   1771730 GGAGGGGAGG-----------GA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     304669 12 -    457564 ggaggggaga-----------gg
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           116384 13 +  18854210 -ggcgggaggaa---------ga
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               107757 263 + 123392446 I
e mm10.chr17               57936734  0 -  94987271 C
e dasNov3.JH582591            42065 4990 +    102524 I
e proCoq1.NW_012152574v1     601968 179 +    730504 I
e canFam3.chr35            26233053 940 +  26524999 I
e calJac3.chrUn_GL286223        994 2011 +    132061 M
e colAng1.NW_012115566v1    2640253  0 -   3067355 C
e macFas5.chr4             29749382 1374 - 170955103 M
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=768513.000000
s hg38.chr6_GL000254v2_alt   893594 103 +   4827813 GGA-------TGCAACCTCGAGGA-GGAAAGGAAC-GAAAGAGGAAGGGAGGGATCTC-ACTTAAGGGGACCCGAGGGG-AGGAGAAA--TGGGGACGGGGCGTGCCAggagggcg
s panTro5.chr6             29856374 103 + 175400573 GGA-------TGCAACCTCGAGGA-GGAAAGGAAC-GAAAGAGGAAGGGAGGGATCTC-ACTTAAGGGGACCCGAGGGG-AGGAGAAA--TGGGGACGGGGCGTGCCAGGAGGGCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30090743 103 + 173848474 GGA-------TGCAACCTCGAGGA-GGAAAGGAAC-GAAAGAGGAAGGGAGGGATCTC-ACTTAAGGGGACCCGAGGGG-AGGAGAAA--TGGGGACGGGGCGTGCCAGGAGGGCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5897358 103 +   6154872 GGA-------TGCAACCTCGAGGA-GGAAAGGAAC-GAAAGAGGAAGGGAGGGATCTC-ACTTAAGGGGACCCGAGGGG-AGGAGAAA--TGGGGACGGGGCGTGCCAGGAGCGCG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30086941 105 + 172585720 AGGGTGGGCTTGCAA-CTCGAGGAGGGAAAGGAAC-GAAAGAAGAA-GGAGGGGTCTC-ACTTAAGGG--CCCGAGGGGAAGGAGAAA--TGGGGACGGGGTG---CAGGCGGGCG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1    2798151 103 -   2996164 GGA-------TGCAACCTCGAGGA-GGAAAGGAAC-GAAAGAAGAAGGGAGGGATCTC-ACTTAAGGGGACCCGAGGGG-AGGAGAAA--TGGGGACGGGGCGTGCCAGGCGGGCG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     549240 103 +    766320 GGA-------TGCAACCTCGAGGA-GGAAAGGAAC-GAAAGAGGAAGGGAGGGATCTC-ACTTAAGGGGACCCGAGGGG-AGGAGAAA--TGGGGACGGGGCGTGCCAGGCGGGCG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29005329 103 -  71996105 GGA-------TGCAACCTCGAGGA-GGAAAGGAAC-GAAAGAGGAAGGGAGGGATCTC-ACTTAAGGGGACCCGAGGGG-AGGAGAAA--TGGGGACGGGGCGTGCCAGGAGGGCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     181518 103 +    290775 GGA-------TGCAACCTCGAGGA-GGAAAGGAAC-GAAAGAGGAAGGGAGGGATCTC-ACTTAAGGGGACCCGAGGGG-AGGAGAAA--TGGGGACGGGGCGTGCCAGGCGGGCG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2640253 100 -   3067355 ----------TGCAACCTCGAAGA-GGAAAGGAAC-GAAAGAGGAAGGGAGGGATCTC-ACTTAAGGGGACCCGAGGGG-AGGAGAAA--TGGGGACGGGGCGTGCCAGGAGGGCG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           228985 103 -    242197 GGA-------GGCAACCTCCAAGA-GGAAAGGAAG-GAGCGAGGAAGGGAGGGGTCTC-ACTTAAGGGGACCCGAGGGG-AGGAGGAA--AGGGGACGGGGCGTGCCGGGAGGGCG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     222664 103 -   1771730 GAA-------GGCAACCTCCagga-ggaaaggaag-gaacgaggaagggaggGGTCTC-ACTTAAGGGGACCGGAGGGG-AGGAGAAA--AGGGGACGGGGCGTGCCGGGAGGGCG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     304681 103 -    457564 gga-------ggCAACCTCCAAGA-GGAAAGGAAG-GAACGAGGAAGGGAGGGGTCTC-ACTTAAGGGGACCCGAGGGG-AGGAGAAA--AGGGGACGGGGCGTGCCGGGAGGGCA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           116397 100 +  18854210 aga-------tgcaacctagtgga-ggggaggaa-----ggaggaagggaagggTCCC-ACTTAAGGGGAACCCAAGAG-AGGTGAAAAGAGAGGACCGGGCGTGCCTGGAGAGC-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57936734  82 -  94987271 ---------------------gga-gaagagggagagcgcaaggaagggaagggtctctgcctaaggagactagaggag-aggataag-----------gatttggaaggagagag
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            47055  98 +    102524 GGA-------CACGACCTCGGAGA-GCGAAggggc-gg-cgagggaggcaggg-tcca-gcacgcggggac---agggg-aggagaaa--ggagggaggggcgtgcccggtgggcg
i dasNov3.JH582591         I 4990 C 0
e micMur3.chr6               107757 263 + 123392446 I
e proCoq1.NW_012152574v1     601968 179 +    730504 I
e canFam3.chr35            26233053 940 +  26524999 I
e calJac3.chrUn_GL286223        994 2011 +    132061 M
e macFas5.chr4             29749382 1374 - 170955103 M
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=692919.000000
s hg38.chr6_GL000254v2_alt   893697 85 +   4827813 gggtgggcggagggagccgcgggaggctgaagcacgg--aggaacc-ag-ggtag-gaagggaaggatgcgagtgggacggga-gagaAAC
s panTro5.chr6             29856477 85 + 175400573 GGGTGGGCGGAGGGAGCCGCGGGAGGCTGAAGCACGG--AGGAACC-AG-GGTAG-GAAGGGAAGGATGCGAGTGGGACGGGA-GAGAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30090846 85 + 173848474 GGGTGGGCGGAGGGAGCCGCGGGAGGCTGAAGCACGG--AGGAACC-AG-GGTAG-GAAGGGAAGGATGCGAGTGGGACGGGA-GAGAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5897461 85 +   6154872 GGGTGGGCGGAGGGAGCCGCGGGAGGCTGAAGCACGG--AGGAACC-AG-GGTAG-GAAGGGAAGGATGCGAGTGGGACGGGA-GAGAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30087046 86 + 172585720 GGGTGGGCGGAGGGA--CGCGGGAGGCTGAAGCACGGGAAGGAACC-AGAGGTAG-GAAGGGAAGG-TGCGAGTGGGACCGGAGGAGAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29750756 86 - 170955103 GGGTGGGCGGAGGGAGCCGCGGGAGGCTGAAGCACGG--AGGAACC-AGAGGTAG-GAAGGGAAGGATGCGAGTGGGACGGGA-GAGAAAC
i macFas5.chr4             M 1374 C 0
s macNem1.NW_012011356v1    2798254 86 -   2996164 GGGTGGGCGGAGGGAGCCGCGGGAGGCTGAAGCACGG--AGGAACC-AGAGGTAG-GAAGGGAAGGATGCGAGTGGGACGGGA-GAGAAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     549343 86 +    766320 GGGTGGGCGGAGGGAGCCGCGGGAGGCTGAAGCACGG--AGGAACC-AGAGGTAG-GAAGGGAAGGATGCGAGTGGGACGGGA-GAGAAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29005432 86 -  71996105 GGGTGGGAGGAGAGAGCCGCCGGAGGCTGAAGCACGG--AGGAACC-AGAGGTAG-GAAGGGAAGGATGCGAGTGGGACGGGA-GAGAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     181621 86 +    290775 GGGTGGGCGGAGGGAGCCGCGGGAGGCTGAAGCACGG--AGGAACC-AGAGGTAG-GAAGGGAAGGATGCGAGTGGGACGGGA-GAGAAAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2640353 86 -   3067355 GGGTGGGCGGAGGGAGCAGCGGGAGGCTGAAGCACGG--AGGAACC-AGAGGTAG-GAAGGGAAGGATGCGAGTGGGACGGGA-GAGAAAC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           229088 85 -    242197 GGGTGCGCGGAGGAAGCCGCGGGAGGCTGAAGCCCGG--AGGAGCC-GG-GGTAG-GAAGGGAAGGATGCGAGTGGGACGGGA-GAGAACC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     222767 86 -   1771730 GGGTGGGCGGAGGGAGCCGCGGGAGGCTGAAGCCCGG--AGGAGCCGGG-GGTAG-GAAGGGAAGGATGCGAGTGGGACGGGA-GAGAACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     304784 85 -    457564 GGGTGGGCGGCGTGAGCCGCGGGAGGCTGAAGCCCGG--AGGAGCC-AG-GGTAG-GAAGGGAAGGATGCGAGTGGGACGGGA-GAGAAGC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           116497 87 +  18854210 GGGTGGGCGGAGGGAGCCGCCGGAGGCTGAAGCTCTG--AAGAGAG-AGGGATGGAGAAGGGGCGGATGAGAGTGGGGCGCGA-CAGAAAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57936816 53 -  94987271 -gat-------------------------aagcacag--agcaaag-ag----gg-gaagcgaggg---tgggtaggttagga-gaggaAG
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            47153 39 +    102524 ---------gggggcgccgagggcg-----agggctg--gggAAGC-GG-GAGAG-GA---------------------------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               107757 263 + 123392446 I
e proCoq1.NW_012152574v1     601968 179 +    730504 I
e canFam3.chr35            26233053 940 +  26524999 I
e calJac3.chrUn_GL286223        994 2011 +    132061 M
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=305231.000000
s hg38.chr6_GL000254v2_alt   893782 23 +   4827813 GGGGCTGGCGCCTGAG-GTCTGAA
s panTro5.chr6             29856562 23 + 175400573 GGGGCTGGCGCCTGAG-GTCTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30090931 23 + 173848474 GGGGCTGGCGCCTGAG-GTCTGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5897546 23 +   6154872 GGGGCTGGCGCCTGAG-GTCTGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30087132 23 + 172585720 GGGGCGGCGGCCTGAG-GTCCTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29750842 23 - 170955103 GGGGCTGGCGCCTGAG-GTCTGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2798340 23 -   2996164 GGGGCTGGCGCCTGAG-GTCTGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     549429 23 +    766320 GGGGCTGGCGCCTGAG-GTCTGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29005518 23 -  71996105 GGGGCTGGCGCCTGAG-GTCTGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     181707 23 +    290775 GGGGCTGGCGCCTGAG-GTCTGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2640439 23 -   3067355 GGGGCTGGCGCCTGAG-GTCTGAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           229173 23 -    242197 GGGGCTGGCGCCTGAG-GTCTGAA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     222853 23 -   1771730 GGGGCTGGCGCCTGAG-GTCTGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     304869 23 -    457564 GGGGCTGGCGCCTGAG-GTCTGAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               108020 23 + 123392446 GGGGCTGGCGCCTGAG-GTCTGAA
i micMur3.chr6             I 263 I 404
s proCoq1.NW_012152574v1     602147 23 +    730504 GGGGCTGGCGCCTGAG-GTCTGAA
i proCoq1.NW_012152574v1   I 179 I 422
s otoGar3.GL873550           116584 23 +  18854210 GGGGCTGGCGCCTGCG-GTCTGAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57936869 14 -  94987271 GTGAC---------AG-TTCTGAA
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            47192 24 +    102524 GAGGCTGGCGCCCGAGCACCCGAA
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26233053 940 +  26524999 I
e calJac3.chrUn_GL286223        994 2011 +    132061 M
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=624772.000000
s hg38.chr6_GL000254v2_alt   893805 85 +   4827813 GTGGGAGTATGAGTCGA--TACAG---TGAAGCACTGAG-GATGT---GGGGGAGAGGAAACGGTTTTGGAGGGA--ACGAGTTGGGTACGGAAGG
s panTro5.chr6             29856585 85 + 175400573 GTGGGAGTATGAGTCGA--TACAG---TGAAGCACTGAG-GATGT---GGGGGAGAGGAAACGGTTTTGGAGGGA--ACGAGTTGGGTACGGAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30090954 85 + 173848474 GTGGGAGTATGAGTCGA--TACAG---TGAAGCACTGAG-GATGT---GGGGGAGAGGAAACGGTTTTGGAGGGA--ACGAGTTGGGTACGGAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5897569 85 +   6154872 GTGGGAGTATGAGTCGA--TACAG---TGAAGCACTGAG-GATGT---GGGGGAGAGGAAACGGTTTTGGAGGGA--ACGAGTTGGGTACGGAAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30087155 90 + 172585720 GTGGGATGATGAGTCAGACTACAGAGTGGAAGCCCTGAGCGGTGT---GGGGGAGAGGAAACGGTTTTGGAGGGA--ACGAGTTGGGTGCGGAA-G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29750865 86 - 170955103 GTGGGAGTATGAGTCGA--TACAG---TGAAGCACTGAG-GGTGTG--GGGGGAGAGGAAACGGTTTTGGAGGGA--ACGAGTTGGGTGCGGAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2798363 86 -   2996164 GTGGGAGTATGAGTCGA--TACAG---TGAAGCACTGAG-GGTGTG--GGGGGAGAGGAAACGGTTTTGGAGGGA--ACGAGTTGGGTGCGGAAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     549452 86 +    766320 GTGGGAGTATGAGTCGA--TACAG---TGAAGCACTGAG-GGTGTA--GGGGGAGAGGAAACGGTTTTGGAGGGA--ACGAGTTGGGTGCGGAAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29005541 86 -  71996105 GTGGGAGTATGAGTCGA--TACAG---TGAAGCACTGAG-GGTGTG--GGGGGAGAGGAAACGGTTTTGGAGGGA--ATGAGTTGGGTGCGGAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     181730 86 +    290775 GTGGGAGTATGAGTCGA--TACAG---TGAAGCACTGAG-GGTGTA--GGGGGAGAGGAAACGGTTTTGGAGGGA--ACGAGTTGGGTGCGGAAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2640462 86 -   3067355 GTGGGAGTATGAGTCGA--TACAG---TGAAGCACTGAG-GGTATG--GGGGGAGAGGAAACGGTTTTGGAGGGA--ACGAGTTGGGTGCGGAAGG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           229196 86 -    242197 GTGAGGGTAGGAGTCGA--TGCCG---TGAGGCGCTGAG-GGTGTG--GGGGTTGAGGACACGGTTTTGGAGGGA--ACGAGTTGGGTATGGAAGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     222876 86 -   1771730 GTGAGGGTAGGAGTCGA--TGCCG---TGAGGCACTGAG-GGTGTG--GGGGTTGAGGAAACGGTTTTGGAGGGA--ACGAGTTGGGTATGGAAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     304892 86 -    457564 GTGAGGGTAGGAGTCGA--TGCCG---TGAGGCACTGAG-GGTGTG--GGGGTTGAGGAAAGGGTTTTGGAGGGA--ACGAGTTGGGTATGGAAGG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           116607 86 +  18854210 ATAGGAGTATGAATAAA--TGGAG---TGGAGGACGGAG-GGGGAGACAGAAGTGTGGAAACCGTTTTAGAGAGA----GAGCTAGGTATAGATGG
i otoGar3.GL873550         C 0 I 5
s mm10.chr17               57936883 75 -  94987271 AGGGGGATATGGGAAGA--TGGAG---CGAGGAACTAAG-GGTA----GGAAGAGCGAGAGCGAT------GGGA--AAGGCTT---TGCAGAAGG
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            47216 40 +    102524 ----------------------------------------------ACGGGCGTTGGGAAGCT--------GGGACCACGGGCT--GCGAGGAAGA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               108043 404 + 123392446 I
e proCoq1.NW_012152574v1     602170 422 +    730504 I
e canFam3.chr35            26233053 940 +  26524999 I
e calJac3.chrUn_GL286223        994 2011 +    132061 M
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1132009.000000
s hg38.chr6_GL000254v2_alt   893890 157 +   4827813 G--AGGCTGGTTT--GA--GGGAGTGGT-GGGGTCGTGGAAGGGAGCCTGGGGCTGGGTAGACAGAAGCCTAAGAAAGGGAGACAGGACATGGAATTGAGAAAAGACGAGGGAAGGG-GTACACGG-AAGGAAA--------AGATGTGGGGAAGA-------GCGCGAGAG-GCCTGGCCA-
s panTro5.chr6             29856670 157 + 175400573 G--AGGCTGGTTT--GA--GGGAGTGGT-GGGGTCGTGGAAGGGAGCCTGGGGCTGGGTAGACAAAAGCCTAAGAAAGCGAGACAGGACATGGAATTGAGAAAAGACGAGGGAAGGG-GTACACGG-AAGGAAA--------AGATGTGGGGAAGA-------GCGCGAGAG-GCCTGGCCA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30091039 157 + 173848474 G--AGGCTGGTTT--GA--GGGAGTGGT-GGGGTCGTGGAAGGGAGCCTGGGGCTGGGTAGACAAAAGCCTAAGAAAGGGAGACAGGACATGGAATTGAGAAAAGACGAGGGAAGGG-GTACACGG-AAGGAAA--------AGATGTGGGGAAGA-------GCGCGAGAG-GCCTGGCCA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5897654 157 +   6154872 G--AGGCTCGTTT--GA--GGGAGTGGT-GGGGTCGTGGAAGGGAGCCTGGGGCTGGGTAGACAGAAGCCTAAGAAAGGGAGACAGGACATGGAATTGAGAAAAGACGAGGGAAGCG-GTACACGG-AAGGAAA--------AGATGTGGGGAAGA-------GCGCGAGAC-GCCTGGCCA-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30087245 155 + 172585720 G--AGACTGTTTT--GA---GGAGTGTTGGGGGTCGTGGAAGGGA--CCTGGGCTGGGTAGACAGAAACCTGAGAAAGGGAGGACGGACATGGAATTGAGAAAAGACAAGGGAAGGGCGTCCACAG-AAGGAAA-------GGGATGTGGGCGAAG-------GC-GGAGAG-G-CTGGCCA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29750951 157 - 170955103 G--AGACTGGTTT--GA--GGGAGTGGT-GGGGTCGTGGAAGGGAGCCTGGGGCTGGGTAGACAGAAACCTGAGAAAGGGAGACGGGACATGGAATTGAGAAAAGACAAGGGAAGGG-GTCCACAG-AAGGAAA--------GGATGTGGGGAAGA-------GCGGGAGAG-GCCTGGCCA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2798449 157 -   2996164 G--AGACTGGTTT--GA--GGGAGTGGT-GGGGTCGTGGAAGGGAGCCTGGGGCTGGGTAGACAGAAACCTGAGAAAGGGAGACGGGACATGGAATTGAGAAAAGACAAGGGAAGGG-GTCCACAG-AAGGAAA--------GGATGTGGGGAAGA-------GCGGGAGAG-GCCTGGCCA-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     549538 157 +    766320 G--AGACTGGTTT--GA--GGGAGTGGT-GGGGTCGTGGAAGGGAGCCTGGGGCTGGGTAGACAGAAACCTGAGAAAGGGAGACGGGACATGGAATTGAGAAAAGACAAGGGAAGGG-GTCCACAG-AAGGAAA--------GGATGTGGGGAAGA-------GCGGGAGAG-GCCTGGCCA-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29005627 156 -  71996105 G--AGACTGGTTT--GA--GGGAGTGGT-GGGGTCGTGGAAGGGAGCCTGGGGCTGGGTAGACAGAAACCTGAGAAAGGGAGACGGGACATGGAATTGAGAAAAGACAAGGGAAGGG-GTCCACGG-AAGGAAA--------GGATGTGGGGAAGA-------GCGGGAGA--GCCTGGCCA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     181816 157 +    290775 G--AGACTGGTTT--GA--GGGAGTGGT-GGGGTCGTGGAAGGGAGCCTGGGGCTGGGTAGACAGAAACCTGAGAAAGGGAGACGGGACATGGAATTGAGAAAAGACAAGGGAAGGG-GTCCACAG-AAGGAAA--------GGATGTGGGGAAGA-------GCGGGAGAG-GCCTGGCCA-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2640548 165 -   3067355 G--AGACTGGTTT--GA--GGGAGTGGT-GGGGTCGTGGAAGGGAGCCTGGGGCGGGGTAGACAGAAACCTGAGAAAGGGAGACGGGACATGGAATTGAGAAAAGACAAGGGAAGGG-GTCCACAG-AAGGAAAGGATGTGGGGATGTGGGGAAGA-------GCGCGAGAG-GCCTGGCCA-
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           229282 159 -    242197 G--AGACTGGTGGA-GA--GGGAGTGGT-GGGGTCGTGGAAGGGAGCCTGGGGCTGGGGAGACCGAAGCCTGAGAAAGGGAGATGGGGCATGGAATTGAGAAGAGACAAGGGAAGGG-GTACACGGAACGGAGA--------GGACGTGGGGAAGA-------GCGCGAGAG-GTCTGGCGA-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     222962 157 -   1771730 G--AGACTGGTGGA-GA--GGGAGCGGT--GGGTCGTGGAAGGGAGCCTGGGGCTGGGGAGACCGAAGCCTGAGAAAGGGAGACGGGGCATGGAATTGAGAAAAGACAAGGGAAGGG-GTACACGG-ACAGAGA--------GGACGTGAGGAAGA-------GCGCGAGAG-GTCTGGCGA-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     304978 158 -    457564 G--AGACTGGTGTA-GA--GGGAGCGGT-GGGGTCGTGGAAGGGAGCCTGGGGCTGGGGAGACCGAAGCCTGAGAAAGGGAGACGGGGCATGGAATTGAGAAAAGACAAGGGAACGG-GTACACGG-ACGGAGA--------GGACGTGGGGAAGA-------GCGCGAGGG-GTCTGGCGA-
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           116698 154 +  18854210 G--AGATTGGTGTACGG--GGAAGTGAA-AGAGAGGTGGAAGGGAACGTGGGGCTGGGTAGACAAAAGTCTGGGACAGGGAGATGGGA---GGAACTGAGACAG---AAGGGTGGGG-ATATAAGG-AAAGAGA--------GGATGTGGGGAAGA-------GCTGAAGAGAGGCTTGCCA-
i otoGar3.GL873550         I 5 C 0
s mm10.chr17               57936958 108 -  94987271 GGAGAACTGGTAT--GG--AGAAGTG---CAGCTTAGGAGAAGGATAGTGTAGTTGAG-------------------GGAAGGC------TGGAA--GAAAGGTGATGGGAGAAAGG-GTCTACAG-------A--------GGATGCGA-----------------------GGCTCGCA--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26233993 129 +  26524999 G--GGGGTGGCGT--GAAGGGAAGCGAT-GGGGCGGGAGGCGGGGACCCGAGGCTGCG-AGACAG--GCCCTGGCTCGGGTGCCTGGA----GACCCGAGAAGGG-CGAGGGTGGCG-GTT--CGG-AGGGAGC-----------------------------------GAG-GCCCTGCCA-
i canFam3.chr35            I 940 C 0
s dasNov3.JH582591            47256  89 +    102524 -------------------GCGGCGGGA-AGAACTGGGGGAGGGGGCTTGGGGCT---------------------------------------------------------CAGGG-GCGCGCGG-------A--------GGGTGCAGAGGAGACCGCGCGGCTGGCGGA-AGCTGGCCCC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               108043 404 + 123392446 I
e proCoq1.NW_012152574v1     602170 422 +    730504 I
e calJac3.chrUn_GL286223        994 2011 +    132061 M
e nomLeu3.chr1a            74598118 3916 + 122973662 M

a score=1725948.000000
s hg38.chr6_GL000254v2_alt   894047 181 +   4827813 GGGTTGGGATGGGTGGG--------AC----AGGCTGAGAAA-GTCCATTAGGTGAAATCCTAGGAGGCAGCAGGCTGG--AAAAGGTTCCAGCGAAGGTCG----CAAGGAACC-CCACAGGGGAAAACGTGGTGGGAGCTCAGGGTCTCCCAGCACCCTGCCGCCCTCTGCT-GGG----CTCTGC---CTGACACCGGCGAGGCTC
s panTro5.chr6             29856827 181 + 175400573 GGGTTGGGATGGGTGGG--------AC----AGGCTGAGAAA-GTCCATTAGGTGAAATCCTAGGAGGCAGCAGGCTGG--AAAAGGTTCCAGCGAAGGTCG----CAAGGAACC-CCACAGGGGAAAACGTGGTGGGAGCTCAGGGTCTCCCAGCACCCTGCCGCCCTCTGCT-GGA----CTCTGC---CTGACGCCGGCGAGGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30091196 181 + 173848474 GGGTTGGGATGGGTGGG--------AC----AGGCTGAGAAA-GTCCATTAGGTGAAATCCTAGGAGGCAGCAGGCTGG--AAAAGGTTCCAGCGAAGGTCG----CAAGGAACC-CCACAGGGGAAAACGTGGTGGGAGCTCAGGGTCTCCCAGCACCCTGCCGCCCTCTGCT-GGA----CTCTGC---CTGACGCCGGCGAGGCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5897811 181 +   6154872 GGGTTGGGATGGGTGGG--------AC----AGGCTGAGAAA-GTCCATTAGGTGAAATCCTAGGAGGCAGCAGGCTGG--AAAAGGTTCCAGCGAAGGTCG----CAAGGAACC-CCACAGGGGAAAACGTGGTGGGAGCTCAGGGTCTCCCAGCACCCTGCCGCCCTCTGCT-GGA----CTCTGC---CTGACGCCGGCGAGGCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74602034 181 + 122973662 GGGTTGGGATGGGTGGG--------AC----AGGCTGAGGAA-GTCCATTAGGTGAAATCCTAGGAGGCAGCAGGCTGG--AAAAGGTTCCAGAGAAGGTCG----CAAGGAACC-CCACAGGGGAAAACGTGGTGGGAGCTCAGGGTCTCCCAGCACCCTGCCGCCCTCTGCT-GGG----CTCTGC---CTGACGCCGGCGAGGCAC
i nomLeu3.chr1a            M 3916 C 0
s rheMac8.chr4             30087400 176 + 172585720 GGGTTGGAATGGGTGGG--------AC----GGGCTGAGGAAGGTCCATTAGTTAAAATCCTAGGG---CGCGCGCTGG---AAAGGTTCCAGAGCAGGTCG----CAAGAAACCACCACCGGGAAAGACGTGGTGGAAGCTCA-GGTCTCCCAGCACCCTGCCGCCCTCTGCT-GGG----CTCTGC---CTGACACCGGCGAGG--C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29751108 178 - 170955103 GGGTTGGGATGGGTGGG--------AC----GGGCTGAGGAA-GTCCATTAGGTAAAATCCTAGGAGGCAGCAGGCTGG--AAAAGGTTCCAGAGAAGGTCG----CAAGAAACC-CCACCGGG-AAGACGTGGTGGAAGCTCAGGGTCTCCCAGCACCCTGCCGCCCTCTGCT-GGG----CTCTGC---CTGACACCGGCGAGG--C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2798606 178 -   2996164 GGGTTGGGATGGGTGGG--------AC----GGGCTGAGGAA-GTCCATTAGGTAAAATCCTAGGAGGCAGCAGGCTGG--AAAAGGTTCCAGAGAAGGTCG----CAAGAAACC-CCACCGGG-AAGACGTGGTGGAAGCTCAGGGTCTCCCAGCACCCTGCCGCCCTCTGCT-GGG----CTCTGC---CTGACACCGGCGAGG--C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     549695 178 +    766320 GGGTTGGGATGGGTGGG--------AC----GGGCTGAGGAA-GTCCATTAGGTGAAATCTTAGGAGGCAGCAGGCTGG--AAAAGGTTCCAGAGAAGGTCG----CAAGAAACC-CCACAGGG-AAGACGTGGTGGAAGCTCAGGGTCTCCCAGCACCCTGCCGCCCTCTGCT-GGG----CTCTGC---CTGACACCGGCGAGG--C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29005783 178 -  71996105 GGGTTGGGATGGGTGGG--------AC----GGGCTGAGGAA-GTCCATTAGGTGAAATCCTAGGAGGCAGCAGGCTGG--AAAAGGTTCCAGAGAAGGTCG----CAAGAAACC-CCACAGGG-AAGACGTGGTGGAAGCTCAGGGTCTCCCAGCACCCTGCCGCCCTCTGCT-GGG----CTCTGC---CTGACACCGGCGAGG--C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     181973 178 +    290775 GGGTTGGGATGGGTGGG--------AC----GGGCTGAGGAA-GTCCATTAGGTGAAATCCTAGGAGGCAGCAGGCTGG--AAAAGGTTCCAGAGAAGGTCG----CAAGAAACC-CCACAGGG-AAGACGTGGTGGAAGCTCAGGGTCTCCCAGCACCCTGCCGCCCTCTGCT-GGG----CTCTGC---CTGACACCGGCGAGG--C
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2640713 178 -   3067355 GGGTTGGGATGGGTGGG--------AC----GGGCTGAGGAA-GTCCATTAGGTGAAATCCTAGGAGGCAGCAGGCTGG--AAAAGGTTCCAGAGAAGGTCG----CAAGAAACC-CCACAGGG-AAGACGTGGTGGAAGCTCGGGGTCTCCCAGCACCCTGCCGCCCTCTGCT-GGG----CTCTGC---CTGACACCGGCGAGG--C
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           229441 179 -    242197 GGGTTGGGATGGG-GGG--------AC----GGGCTGAGGAG-GTCCATTAGGCGAAATCCTAGGAGGCAGCAGGCTGG--AAAAGGTTCCAGGGAAGGTCG----CAAGGAACC-CCACAGGGGAAAACGCAGT-GAAGCTCAGGGTCTCCCGGCACCCTGCCGCCCTCTGCT-GGG----CTCTGC---CTGACGCCGACGAGGCAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     223119 180 -   1771730 GGGTTGGGATGGGCGGG--------CC----GGGCTGAGGAA-GTCCATTAGGCGAAATCCTAGGAGGCAGCAGGCTGG--AAGAGGTTCCAGGGAAGGTCG----CAAGGAACC-CCACAGGGGAAAACGCGGT-GAAGCTCAGGGTCTCCCGGCACCCTGCCGCCCTCTGCT-GGG----CTCTGC---CAGACGCCGACGAGGCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     305136 180 -    457564 GGGTTGGGATGGGTGGG--------AC----GGGCTGAGGAA-GTCCATTAGGCGAAATCCTAGGAGGCAGCAGCCTGG--AAAAGGTTCCAGAGAAGGTCG----CAAGGAACC-CCACAGGGGAAAACGCGGT-GAAGCTCAGGGTCTCCCGGCACCCTGCCGCCCTCTGCT-GGG----CTCTGC---CTGACGCCGACGAGGCAG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           116852 182 +  18854210 GGGCTGAGATGAGTGGG--------AT----GGGCTGATGGA-GTCTGCTAGGTGATTTCCTAGGAGAGGGCCGGCGGGCAAAAAGGTTCCAGAGAAGGTCG----GAAGGAACC-CAGCAGAGCAAGACAGGATAGAAACTCAGGGTCTCCCAGCACGCTGCCGCCCCCTGCTGGGG----CTCTGC---CTTTTAGCCGGGAGG--C
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               57937066 161 -  94987271 TGGGTGGGACCAGTGAA--------CA----GGGTCGACGGA-ACCTCGCAGGTAAAA-CCTGGGTAGGGGGTGGCAAG--AGTAGGTCCCCG---AGGTCT----GAAGGAACC-CCACGAAGGA----------GAGATCTGGGATCCTCCGGCGCGCGGCTGCCCCCTACC-GGG----CTTCGC---GCTAGAAAGCTG------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26234122 143 +  26524999 -GGCTGCGGTgggcgcgcgggggcccc----ggggTGGGGGT-GTC-GTCAGGCGCCCCCCCAAGAGGGTGGAGG--GG--AAGCAG---CAGCGAGGGTC-----------AGC-TCGC------------------------------CCCGTCGCCCCCCACGCCTCAGCC-GGG----CGCCGCGATCCGGCAGAAGCGG-----
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            47345 163 +    102524 GGGT---GATGGGAAAG--------AAAAGGGGGCTGCGGGA-ATC-GTTCCGTGGGCCCTCGGGGGGC-GCAGGCAGG--AGGGGGTCCC-GTGAAGGTCGGGGCGAGGGGAGC-CCACCGAG--------GACGGCGGCTCAGGCTTCGCGGGTCCCCGGCCGCCCTCTGCT-GGGGACCCGCAGC---TC----------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               108043 404 + 123392446 I
e proCoq1.NW_012152574v1     602170 422 +    730504 I
e calJac3.chrUn_GL286223        994 2011 +    132061 M

a score=822757.000000
s hg38.chr6_GL000254v2_alt   894228 67 +   4827813 AGTC------TGGGAGGAGGTGGAGCCCAGGGAAG--TGTAGCCAAGCAGGGA-CAA------GGAGAGACCGCAGCCTCGT
s panTro5.chr6             29857008 67 + 175400573 AGTC------TGGGAGGAGGTGGAGCCCAGGGAAG--TGTAGCCAAGCAGGGA-CAA------GGAGAGACCGCAGCCTCGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30091377 67 + 173848474 AGTC------TGGGAGGAGGTGGAGCCCAGGGAAG--TGTAGCCAAGCAGGGA-CAA------GGAGAGACCGCAGCCTCGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5897992 67 +   6154872 AGTC------TGGGAGGAGGTGGAGCCCAGGGAAG--TGTAGCCAAGCAGGGA-CAA------GGAGAGACCGCAGCCTCGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74602215 67 + 122973662 AGTC------TGGGAGGAGGTGGAGCCCAGGGAAG--TGTAGCCAAGCAGGGA-CAA------GGAGGGACCGCAGCCTCGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30087576 67 + 172585720 AGTC------TGGGAGGAGGTGGAGCCCAGGGAAG--TGTAGCCAAGCAGGGA-CAC------GGAGGGACCGCAGCCCCGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29751286 67 - 170955103 AGTC------TGGGAGGAGGTGGAGCCCAGGGAAG--TGTAGCCAAGCAGGGA-CAC------GGAGGGACCGCAGCCCCGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2798784 67 -   2996164 AGTC------TGGGAGGAGGTGGAGCCCAGGGAAG--TGTAGCCAAGCAGGGA-CAC------GGAGGGACCGCAGCCCCGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     549873 67 +    766320 AGTC------TGGGAGGCGGTAGAGCCCAGGGAAG--TGTAGCCAAGCAGGGA-CAC------GGAGGGACCGCAGCCCCGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29005961 67 -  71996105 AGTC------TGGGAGGAGGTGGAGCCCAGGGAAG--TGTAGCCAAGCAGGGA-CAC------GGAGGGACCGCAGCCCTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     182151 67 +    290775 AGTC------TGGGAGGAGGTAGAGCCCAGGGAAG--TGTAGCCAAGCAGGGA-CAC------GGAGGGACCGCAGCCCCGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2640891 64 -   3067355 AGTC------TGGGAGGAGGTGGAGCCCAGGGAAG--TGTAGCCAAGCAGGGA-CAC------GGAGGGACCGCAGCCC---
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           229620 66 -    242197 AGTC------TGGGAGGAGGTGGCGCCCAGGGAAG--TGCAGCCAAGCAGGGA-CG-------GGAGGGACCGCAGCCCCGC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     223299 66 -   1771730 AGTC------TGGGAGGAGGTGGCGCCCAGGGAAG--TGCAGCCAAGCAGGGA-CG-------GGAGGGACCGCAGCCCCGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     305316 66 -    457564 AGTC------TGGGAGGAGGTGGCGCCCAGGGAAG--TACAGCCAAGCAGGGA-CG-------GGAGGGACCGCAGCCCCGC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     602592 66 +    730504 AGTC------CGGCAGGAGGTGGCACCGAGGGCAG--TGCAGCCAGGCAGGGA-CAG-----GGGAGGGACCGCGGCCGC--
i proCoq1.NW_012152574v1   I 422 C 0
s otoGar3.GL873550           117036 68 +  18854210 AGTC------TGAGAGGAGGTGGCAACCAGGGTAG--TGCAGCCAAGCAGGGA-CAA-----GGGAGGGACCGCAGCCCCGC
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               57937227 66 -  94987271 AGTC------CGAGAGGA-GCGCGACCCGGAGGAG--CGTGGCCAAGCAGGGA-AGT-----GGGAGGGAGCGCGACCCGC-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26234265 68 +  26524999 GGTC------TGGCGGGAGGCGGGGCGGAGGGCAG--GGCAGCCGAGCGGGGAGCGG------GGAGGGACCGCGGGCCTGC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            47508 77 +    102524 AGCCGCCGAGCGGGAGGAGGCGGAGCCGAGGGCAGGCCGCGGGCGCGCGGGAG-GGCAGCGCGGGAGGGCTGGCCGCC----
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               108043 404 + 123392446 I
e calJac3.chrUn_GL286223        994 2011 +    132061 M

a score=6422893.000000
s hg38.chr6_GL000254v2_alt   894295 443 +   4827813 GGAAAACCGGGA-CTGGAGGC-AGGAAACAGGTAGGGAGGGAAGGGGGTGG-CCGCAAACTGGGGTGGGTTGGGGAAGGTGCG-AAAGGACGA-CG--CCCCGTAGCCT-AAGGGCAGAATTTCAGGGGGGTGGAGGGTGC-AGAGTGAAGGGG-AGGGCAT-T----GCAGTGCG--CGCGGT--AAGGGTTT-CTCATCTCACCTGAGTGTGGCGTTCGATTCACTGGCAGCAGGAAAGA-CGGGGATCAGAGAAGAGTTACCACTGGCGCCCAGCTTCCCTGGCCTGATCCCCAGCCCCCTCCCACACCTGTCCATGCT---GAAGACCGGGGAGAGCAGAAGCCTGCGTTTCTGAGGGGAGGGTGCCTGGGG-ATAAGAACAAGGTGGGTCTGGGGGTAAGGGGGTCAGGACTT----ATTTTCTTCTTCGATTTTTCATAGGACAACAGAATTTGAGACGGGAATGC
s panTro5.chr6             29857075 440 + 175400573 GGAAAACCGGGA-CTGGAGGC-AGGAAACAGGTAGGGAGGGAAGGGGGTGG-CCGCAAACTGGGGTGGGTTGGGGAAGGTGCG-AAAGGACGA------CCCGTAGCCT-AAGGGCAGAATTTCAGGGGGGTGGAGGGTGC-AGAGTGAAGGGG-AGGGCAT-T----GCAGTGCG--CGCGGT--AAGGGTTT-CTCATCTCACCTGAGTGTGGCGTTCGATTCACTGGCAGCAGGAAAGA-CGGGGATCAGAGAAGAGTTACCACTGGCGCCCAGCTTCCCTGGCCTGATCCCCAGCCCCCTCCCACACCTGTCCATGCT---GAAGACCGGGGAGAGCAGAAGCCTGCGTTTCTGAGGGGAGGGTGCCTGGGG-ATAAGAACAAGGTGGGTCTGGGGGTAAGGGGGTCAGAACTT----ATTTTCTTCTTCGATTTTTCATAGGACAACAGAATTTGAGACGGGAATGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30091444 439 + 173848474 GGAAAACCGGGA-CTGGAGGC-AGGAAACAGGTAGGGAGGGAAGGGGGTGG-CCGCAAACTGGGGTGGGTTGGGGAAGGTGCG-AAAGGACGA------CCCGTAGCCT-AAGGGCAGAATTTCA-GGGGGTGGAGGGTGC-AGAGTGAAGGGG-AGGGCAT-T----GCAGTGCG--CGCGGT--AAGGGTTT-CTCATCTCACCTGAGTGTGGCGTTCGATTCACTGGCAGCAGGAAAGA-CGGGGATCAGAGAAGAGTTACCACTGGCGCCCAGCTTCCCTGGCCTGATCCCCAGCCCCCTCCCACACCTGTCCATGCT---GAAGACCGGGGAGAGCAGAAGCCTGCGTTTCTGAGGGGAGGGTGCCTGGGG-ATAAGAACAAGGTGGGTCTGGGGGTAAGGGGGTCAGAACTT----ATTTTCTTCTTCGATTTTTCATAGGACAACAGAATTTGAGACGGGAATGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5898059 443 +   6154872 GGAAAACCGGGA-CTGGAGGC-AGGAAACAGGTAGGGAGGGAAGGGGGTGG-CCGCAAACTGGGGTGGGTTGGGGAAGGTGCG-AAAGGACGA-CG--CTCCGTAGCCT-AAGGGCAGAATTTCAGGGGGGTGGAGGGTGC-AGAGTGAAGGGG-AGGGCAT-T----GCAGTGCG--CGCGGT--AAGGGTTT-CTCATCTCACCTGAGTGTGGCGTTCGATTCACTGGCAGCAGGAAAGA-CGGGGATCAGAGAAGAGTTACCACTGGCGCCCAGCTTCCCTGGCCTGATCCCCAGCCCCCTCCCACACCTGTCCATGCT---GAAGACCGGGGAGAGCAGAAGCCTGCGTTTCTGAGGGGAGGGTGCCTGGGG-ATAAGAACAAGGTGGGTCTGGGGGTAAGGGGGTCAGGACTT----ATTTTCTTCTTCGATTTTTCATAGGACAACAGAATTTGAGACGGGAATGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74602282 448 + 122973662 GGAAAACCAGGA-CTGGAGGC-AGGAAACAGGTAGGGAGGGAAGGGGGTGGCCCGCAAACTGGGGTGGGTTGGGGAAGGTGAA-AAAGGACGA-CG-CCCCCGTAACCT-AAGGGCAGAATTTCAGGGGGTGGAAGGGTGCAAAAGTGAAAGGG-AAGGCAT-TG---GCAGTGCG--CGCGGGTAAAGGGTTTCCTCATCTCACCTGAATGGGGCGTTCGATTCACTGGCAGCAGAAAAGACCGGGGATCA-AAAAAAATTACCACTGGCGCCCAGCTTCCCTGGTTGATCCCCCACCCCCCTCCCACACCTGTCCATGCT---GAAAACCGGGGAGAGCA-AAATCTGCGTTTCTGAAGGGAGGGTGTCTGGGG-ATAAAAAGCAAGTGGGTCTGGGGGTCAGGGGGTCAG-ACTT----ATTTTCTTCTTCGATTTTTCATAGGACAACAGAATTTGAGACGGGAATGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30087643 435 + 172585720 GGAAAACCGGGA-CTGGAGGC-AGGAAACAGGTAGGAAGGGAAGGGGGTGG-CCGCAAACTGGGGTGGGTTGGGGAAGGTGAC-AACGGAGGA-CG--CCCCGTAGCCTCAAGGGCAGAATTTCA-GGGGGTGGAGGGTGC-AGAGTGAAGGGG-AGGGCAT-T----GCAGTGCA--CGCGGT--AAGGGTTT-CTCATCTCACCTGAGTGTGGCGTTCGATTCACTGGCAGCAGGAAAGA-CGGGGATCAGAGAAGAGTTACCACTGGCGCCCAGCTTCCCTGGCCTGATCCCCAGCCCCCTCCCACACCTGTCCATGCT---GAAGACCGGGGAGGGCAGAAGCCTGCGTTTCTGAGGGGAGGGTGCCTGGGG-ATAAGAGCAAGGTGGGTCT--------GGGGATCAGGACTT----ATTTTCTTCTTCGAGTTTTTATAGGACAACAGAATTTGAGACAGGAATGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29751353 435 - 170955103 GGAAAACCGGGA-CTGGAGGC-AGGAAACAGGTAGGAAGGGAAGGGGGTGG-CCGCAAACTGGGGTGGGTTGGGGAAGGTGAC-AACGGAGGA-CG--CCCCGTAGCCTCAAGGGCAGAATTTCA-GGGGGTGGAGGGTGC-AGAGTGAAGGGG-AGGGCAT-T----GCAGTGCA--CGCGGT--AAGGGTTT-CTCATCTCACCTGAGTGTGGCGTTCGATTCACTGGCAGCAGGAAAGA-CGGGGATCAGAGAAGAGTTACCACTGGCGCCCAGCTTCCCTGGCCTGATCCCCAGCCCCCTCCCACACCTGTCCATGCT---GAAGACCGGGGAGGGCAGAAGCCTGCGTTTCTGAGGGGAGGGTGCCTGGGG-ATAAGAGCAAGGTGGGTCT--------GGGGATCAGGACTT----ATTTTCTTCTTCGAGTTTTTATAGGACAACAGAATTTGAGACAGGAATGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2798851 435 -   2996164 GGAAAACCGGGA-CTGGAGGC-AGGAAACAGGTAGGAAGGGAAGGGGGTGG-CCGCAAACTGGGGTGGGTTGGGGAAGGTGAC-AACGGAGGA-CG--CCCCGTAGCCTCAAGGGCAGAATTTCA-GGGGGTGGAGGGTGC-AGAGTGAAGGGG-AGGGCAT-T----GCAGTGCA--CGCGGT--AAGGGTTT-CTCATCTCACCTGAGTGTGGCGTTCGATTCACTGGCAGCAGGAAAGA-CGGGGATCAGAGAAGAGTTACCACTGGCGCCCAGCTTCCCTGGCCTGATCCCCAGCCCCCTCCCACACCTGTCCATGCT---GAAGACCGGGGAGGGCAGAAGCCTGCGTTTCTGAGGGGAGGGTGCCTGGGG-ATAAGAGCAAGGTGGGTCT--------GGGGATCAGGACTT----ATTTTCTTCTTCGAGTTTTTATAGGACAACAGAATTTGAGACAGGAATGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     549940 435 +    766320 GGAAAACCGGGA-CTGGAGGC-AGGAAACAGGTAGGAAGGGAAGGGGGTGG-CCGCAAACTGGGGTGGGTTGGGGAAGCTGAC-AACGGACGA-CG--CCCCGTAGCCTCAAGGGCAGAATTTCA-GGGGGTGGAGGGTGC-AGAGTGAAGGGG-AGGGCAT-T----GCAGTGCA--CGCGGT--AAGGGTTT-CTCATCTCACCTGAGTGTGGCGTTCGATTCACTGGCAGCAGGAAAGA-CGGGGATCAGAGAAGAGTTACCACTGGCGCCCAGCTTCCCTGGCCTGATCCCCAGCCCCCTCCCACACCTGTCCATGCT---GAAGACCGGGGAGGGCAGAAGCCTGCGTTTCTGAGGGGAGGGTGCCTGGGG-ATAAGAGCAAGGTGGGTCT--------GGGGATCAGGACTT----ATTTGCTTCTTCGAGTTTTCATAGGACAACAGAATTTGAGACAGGAATGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29006028 435 -  71996105 GGAAAACCGGGA-CTGGAGGC-AGGAAACAGGTAGGGAGGGAAGGGGGTGG-CCGCAAATTGGGGTGGGTTGGGGAAGGTGAC-AACGGACGA-CG--CCCCGTAGCCTCAAGGGCAGAATTTCA-GGGGGTGGAGGGTGC-AGAGTGAAGGGG-AGGGCAT-T----GCAGTGCA--CGCGGT--AAGGGTTT-CTCATCTCACCTGAGTGTGGCGTTCGATTCACTGGCAGCAGGAAAGA-CGGGGATCAGAGAAGAGTTACCACTGGTGCCCAGCTTCCCTGGCCTGATCCCCAGCCCCCTCCCACACCTGTCCATGCT---GAAGACCGGGGAGGGCAGAAGCCTGCGTTTCTGAGGGGAGGGTGCCTGGGG-ATAAGAGCAAGGTGGGTCT--------GGGGATCAGGACTT----ATTTTCTTCTTCGAGTTTTCCTAGGACAACAGAATTTGAGACAGGAATGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     182218 435 +    290775 GGAAAACCGGGA-CTGGAGGC-AGGAAACAGGTAGGAAGGGAAGGGGGTGG-CCGCAAACTGGGGTGGGTTGGGGAAGCTGAC-AACGGACGA-CG--CCCCGTAGCCTCAAGGGCAGAATTTCA-GGGGGTGGAGGGTGC-AGAGTGAAGGGG-AGGGCAT-T----GCAGTGCA--CGCGGT--AAGGGTTT-CTCATCTCACCTGAGTGTGGCGTTCGATTCACTGGCAGCAGGAAAGA-CGGGGATCAGAGAAGAGTTACCACTGGCGCCCAGCTTCCCTGGCCTGATCCCCAGCCCCCTCCCACACCTGTCCATGCT---GAAGACCGGGGAGGGCAGAAGCCTGCGTTTCTGAGGGGAGGGTGCCTGGGG-ATAACAGCAAGGTGGGTCT--------GGGGATCAGGACTT----ATTTGCTTCTTCGAGTTTTCATAGGACAACAGAATTTGAGACAGGAATGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2640955 435 -   3067355 GGAAAACCGGGA-CTGGAGGC-AGGAAACAGGTAGGGAGGGAAGGGGGTGG-CCGCAAACTGGGGTGGGTTGGGGAAGGTGAC-AACGGACGA-CG--CCCCGTAGCCTCAAGGGCACAATTTCA-GGGGGTGGAGGGTGC-AGAGTGAAGGGG-AGGGCAT-T----GCAGTGCA--CGCGGT--AAGGGTTT-CTCATCTCACCTGAGTGTGGCGTTCGATTCACTGGCAGCAGGAAAGA-CGGGGATCAGAGAAGAGTTACCACTGGCGCCCAGCTTCCCTGGCCTGATCCCCAGCCCCCTCCCACACCTGTCCATGCT---GAAGACCAGGGAGGGCAGAAGCCTGCGTTTCTGAGGGGAGGGTGCCTGGGG-ATAAGAGCAAGGGGGGTCT--------GGGGATCAGGACTT----ATTTTCTTCTTCGAGTTTTCACAGGACAACAGAATTTGAGACAGGAATGC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           229686 441 -    242197 GGAAAACCGGGA-CTGGAGGC-AGGAAACAGGTAGGGAGAGAAGGGGGTGG-CCGCAAACTGGGGTGGGTTGGGGAAGGTGAGAAAAGGACGACCCCCCCCCGTAGCCT-AAGGGCAGAATTTCA-GGGGGTGGAGGGTGC-AGAGTGAAGGGA-AGGGCAT-T----GCAGTGCA--CGCGGT--AAGGGTTT-CTCATCTCACCTGAGTGTGGCGTTCGATTCACTGGCAGCAGGAAAGA-CGGGGATCAGAGAAGAGTTACCACTGGCTCCCAGCTTCCCTGGCCTGATCCCCAGCCCCCTCCCACACCTGTCCATGCT---GAAGACCG-GGAGAGCAGAAGCCTGCGTTTCTGAAGGGAGGGTGCCTGAGG-ATAAGAGCAAGGTGGGACT--------AGGGGTCAGGACTTATTGATTTTCTTCTCTGATTTTTCATAGGACAACAGAATTTGAGACAGGAATGC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     223365 441 -   1771730 AGAAAACCGGGA-CTGGAGGC-AGGAAACAGGTAGGGAGAGAAGGGGGTGG-CCGCAAACTCGGGTAGGTTGGGGAAGGTGAGAAAAGGACGA-CCCCCCCCGTAGCCT-AAGGGCAGAATTTCA-GGGGGTGGAGGGTGC-AGAGTGAAGGGA-AGGGCAT-T----GCAGTGCA--CGCGGT--AAGGGTTT-CTCATCTCACCTGAGTGTGGCGTTCGATTCACTGGCAGCAGGAAAGA-CGGGGATCAGAGAAGAGTTACCACTGGCGCCCAGCTTCCCTGGCCTGATCCCCAGCCCCCTCCCACACCTGTCCATGCT---GAAGACCA-GGAGAGCAGAAGCCTGCGTTTCTGAGGGGAGGGTGCCTGGGGAATAAGAGCAAGGTGGGACT--------AGGGGTCAGGACTTATTGATTTTCTTCTTTGATTTTTCATAGGACAACAGAATTTGAGACAGGAATGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     305382 440 -    457564 GGAAAACCGGGA-CTGGAGGC-AGGAAACAGGTAGGGAGAGAAGGGGGTGG-CCGCAAACTGGGGTGGGTTGGGGAAGGTGAGAAAAGGACGA-CCCCCCCCGTAGCCT-AAGGGCAGAATTTCA-GGGGGTGGAGGGTGC-AGAGTTAAGGGA-AGGGCAT-T----GCAGTGCA--GGCGGT--AAGGGTTT-CTCATCTCACCTGAGTGTGGCGCTCGATTCACTGGCAGCAGGAAAGA-CGGGGATCAGAGAAGAGTTACCACTGGCGCCCAGCTTCCCTGGCCTGATCCCCAGCCCCCTCCCACACCTGTCCATGCT---GAAGACCA-GGAGAGCAGAAGCCTGCGTTTCTGAGGGGAGGGTGCCTGGGG-ATAAGAGCAAGGTGGGACT--------GGGGGTGAGGACTTATTGATTTTCGTCTTTGATTTTTCATAGGACAACAGAATTTGAGCCAGGAATGC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               108447 435 + 123392446 GGAAAACCGAGA-CTGGAGGT-GGGAAACCAGTAGGGAGAAAAGGGGACAG-TTGCAAACCCGGGTGGGTGGGGCGAAGTGGGAAAAGGACGA-CG--TCCCATAGCCT-AAGGGCAGCATTTCT-GGGTGGGGAGGGTGC-AGAGTGAAGGGG-AAGGAGA-T----GCAGTGCA--CGCGAT--GCCGGCGT-CTCATCTCACCTGAGTGTGGCGTTCGATTCACTGGCAGCAGGAAAGA-CGGGGATCAGAGAAGAGTTACCACTGGTGCCCAGCTTCCCAGGCCTGATCCCCAGCCCCCTCCCACACCTGTCCGTGCC---GAAGACC-GGGAGAGCAGAAGCCTGTGTTTCTGAGGGAAGGGTGCCTGAGG-ATAAGAGCAAGGTGGGGCT--------GGGGGTCAGGACTT---GATTTTCTTCTCTTATTTTTCACAGGACAACAGATTTTGAGACAGGAGTGC
i micMur3.chr6             I 404 C 0
s proCoq1.NW_012152574v1     602658 435 +    730504 GGAACACCGAGA-CTGGAGGC-AGGAAACAGGTAGGGAGAAAAGGGGACGG-TCGCAAACCGGGGTGAGTGGGGGGAAGTGGGAAAAAGACGA-CA--CCCCATAGCCG-AAGGGCAGAATTTCT-GGGGGTGGAGGGTGC-AGAGTGAAGGGG-AAGGAGA-T----GCAGTGCA--CGCGAT--AAGGGTGT-CTCATCTCACCTGAGTGTGGCGTTCGATTCACTGGCAGCAGGAAAGA-C-GGGATCAGAGAAGAGTTACCACTGGTGCCCAGCTTCCCTGGCCTGATCCCCAGCCCCCTCCCACACCTGTCCATGCC---GAAGACCGGGGAGAGCAGAAGCCTGCGTTTCTGAGGGGAGGGTGCCTGAGG-ATAAGAGCAAGGTGGGGCT--------GGGGGTCAGGACTT---GATTTTCTTCTCTTACTTTTCATAGGACAACAGATTTTGAGACAGGAGTGC
i proCoq1.NW_012152574v1   C 0 I 412
s otoGar3.GL873550           117104 438 +  18854210 AGAAAACCGAGA-CTGGAGGCAAGAAAACAGGTAGGGAGAAAAGGGGACGA-TCGCAAACCGGGGTGAGTGGGGTAAAGTGGGGAAAGGACAA-CA--TGTTATAGTCT-AAGGGCTGAATTTCT-GAGGGTGGAGGGTGC-AGAGTGAAGGGG-AAGGAGATT----GCAGTGCACGCGCGAT--AAGGGTGT-CTCATCTCACCTGAGTGTGGCGTTCGATTCACTGGCAGCAGGAAAGA-CGGGGATCAGAGAAGAGTTACCACTGGCGCCCAGCTTCCCTGGCCTGATCCCCAGCCCCCTCCCACACCTGTCCATGCT---GAAGACC-GGGAGAACAGAAACCTGCGTTTCTGAGGGGAGGGT-TCTGAGG-ATAAGACCAAGGTAGGGTT--------GGGGGTCAGGACTT---GATTTTCTTCTTTTATTTTTTATAGGATAACAGAATTTGAGGTAGGAGTGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57937293 405 -  94987271 GGAAAACCGCGATTTGGCGGC-AAGAAACAGGTAGG-AGAGGAGGGCCCGG-CCTCAAACTAGAATGGGTGGTGGGACATGAGTAACAG--GA-CA---CCCACAACCT-AAGCAAAGATATCCT-GCTGGTGGAGGGTGA-AGAGTGAGGGGA-TGGGGGC-G----GCAGTGCA--CGCGG---AAGGGTTT-CTGATCTCACCTGAGTGTGGCGTTCGATTCACTGGCAGCAGGAAAGA-CGGGGATCAGAGAAGAGTTACCAGGGGCGCCCAGCTTCCCAGGCCTGATCCCCAGCCCCCTCCCACACCTGTTCATGC-------------GGAGCGGAGA---CTGCG---ATGAGGGAAGGGTGCCTGAGG-ATAAGAGCAAGGCGGGGCT--------AGGGGTCAGGACTC----GTGTT-TTCTTCAATTATTCAAAGGACAACAGAATTTG---------TTC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26234333 429 +  26524999 AGAAAACCCCGA-C-AGAGGC-AGAAAACCGGTAGGGAAAGGAGGG-CCAG-CCGCGAATGGGGTCGGGGTGGGGAAG------GGGGGACAG-GA--CCCCGCAGCT--GGGGGCGCGACCC---GGGGGCGCAGGGCGG-ACTGTGAGGGGTCAGGGCAT-TGCGTGCGGTGCG--CGACAG--GAGGGTTT-CTGATCTCACCTGAGTGCGGCGTTCGGTTCACTGGCAGCAGGAAAGA-CGGGGATCAGAGAAGAGTTACCACTGGCGCCCAGCGCCCC-GGCCAGAGCCCCAGCCCCCTCCCACATCTGTCCAAGCCGGAGAGGACCGGGGACAGCAGGAGCCCGCG-TTCTGAGGGGAGGGTGCCTGGGG-ATAAGAGCAAGGTGGGGCT--------GCGGGTCAGGACCTACGGGTGTTTTT-----ATTTCTCATAGGACAACAGAATTTGAGAGGGGAGTGC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            47585 376 +    102524 GCCAAGCCGGGA-CTGGAGGC-GGGAAGCAGGTAGG-AGAGCAGGGCAGGG-CCGCCC------GCGGGCCGGGAAGGCCAGG-CAGGGCCGG-GG--TCCC------------------------TGGGGCGGAGGGGCA-AGAGTGAGGGGC-ACGGGGT------GCGGCGCC--CGCGCT---AGGGCTT-CCCAGCTCACCTGAGTGCGGCGTTCGGGTCACTGGCAGCAGGAAAGA-CGGGGATCAGAGAAGAGTTACCAGGGG-GCCCCGCTTCCCCGGCGACTTCCCCA--CCCCTCCCACACCTGTCCACGCT---GAAGAC----------------------------GGGGAGGGCGCCTGGGG-AGGAGAGCCAGGTGGGGCT--------GGCGGCCAGCGCTCCAAGACTTTCTTCCTTTATTTTTCATAGGACGACTGAATTGGGGGCAGGAGGGC
i dasNov3.JH582591         C 0 C 0
e calJac3.chrUn_GL286223        994 2011 +    132061 M

a score=754535.000000
s hg38.chr6_GL000254v2_alt   894738 59 +   4827813 CAATAGCTAA-----GTTTggggcagatcttggttctgtggtgcctgaatattac------------aaaattggg
s panTro5.chr6             29857515 59 + 175400573 CAATAGCTAA-----GTTTggggcagatcttggttctgtggtgcctgaatattac------------aaaattggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30091883 59 + 173848474 CAATAGCTAA-----GTTTggggcagatgttggttctgtggtgcctgaatattac------------aaaattggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5898502 59 +   6154872 CAATAGCTAA-----GTTTggggcagatcttggttctgtggtgcctgaatattac------------aaaattggg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74602730 59 + 122973662 CAATAGCTAA-----GTTTggggcagatcttggttctgtggtgcctgaatattac------------aaaattggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30088078 58 + 172585720 CAATAGCTAA-----GTTTggggcagatcttggttctgtggtgcctgaatattac-------------aaattggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29751788 59 - 170955103 CAATAGCTAA-----GTTTggggcagatcttggttctgtggtgcctgaatattac------------aaaattggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2799286 59 -   2996164 CAATAGCTAA-----GTTTggggcagatcttggttctgtggtgcctgaatattac------------aaaattggg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     550375 59 +    766320 CAATAGCTAA-----GTTTggggcagatcttggttctgtggtgcctgaatattac------------aaaattggg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29006463 59 -  71996105 CAATAGCTAA-----GTTTggggcagatcttggttctgtggtgcctgaatattac------------aaaattggg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     182653 59 +    290775 CAATAGCTAA-----GTTTggggcagatcttggttctgtggtgcctgaatattac------------aaaattggg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2641390 59 -   3067355 CGGCAGCTAA-----GTTTggggcagatcttagttctgtggtgcctgaatattac------------aaaattggg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           230127 59 -    242197 CAGCAACTAA-----GTTTggggcagatcttggttctgtggcgcctgaatattac------------aaaattggg
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     223806 59 -   1771730 CAGCAGCTAA-----GTTTAgggcagatcttgcttctgtggcgcctgaatattac------------aaaattggg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     305822 58 -    457564 CAACAGCTAA-----G-TTggggcagatcttggttctgtggcgcctgaatattac------------aaaagtggg
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               108882 58 + 123392446 CAACAGCAAA-----GGcaggggcaaatc-tagttttgtggtgcctgaatattat------------aaacttggg
i micMur3.chr6             C 0 I 3
s otoGar3.GL873550           117542 58 +  18854210 CAACAGCAAA-----GTcagggtcaaacc-tagttttgtggtgcctaaatattat------------aaaactggg
i otoGar3.GL873550         C 0 I 3
s mm10.chr17               57937698 74 -  94987271 CAGCAAGTAAAGGGGGTCGGGTGCAG--CTGAGTTTTGTAGAGCTTGAATATTATATACGTATATATAAACCTATG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26234762 59 +  26524999 CAGCCGCTAA-----GAcaggggcagatcctggctttgtgcagcctaaatattag------------aaaattcag
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            47961 59 +    102524 CAAGGGCTGG-----GGcaggagcacatcctggtttggcggggcctgaagattat------------aaaatcggg
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     603093 412 +    730504 I
e calJac3.chrUn_GL286223        994 2011 +    132061 M

a score=81966.000000
s hg38.chr6_GL000254v2_alt   894797  7 +   4827813 --agtcttt--
s panTro5.chr6             29857574  7 + 175400573 --agtcttt--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30091942  7 + 173848474 --agtcttt--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5898561  7 +   6154872 --agtcttt--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74602789  7 + 122973662 --agtcttt--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30088136  7 + 172585720 --aatcttt--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29751847  7 - 170955103 --aatcttt--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2799345  7 -   2996164 --aatcttt--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     550434  7 +    766320 --aatcttt--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29006522  7 -  71996105 --aatcttt--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     182712  7 +    290775 --aatcttt--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2641449  7 -   3067355 --aatcttt--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       3005  7 +    132061 --AGTCTTT--
i calJac3.chrUn_GL286223   M 2011 C 0
s saiBol1.JH378357           230186  7 -    242197 --agtcttt--
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     223865  7 -   1771730 --agtcttt--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     305880  7 -    457564 --agtcttt--
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               108943  7 + 123392446 --gggcttt--
i micMur3.chr6             I 3 I 3
s otoGar3.GL873550           117603  7 +  18854210 --agtcctt--
i otoGar3.GL873550         I 3 I 5
s mm10.chr17               57937772  6 -  94987271 ---ATCTCT--
i mm10.chr17               C 0 I 2
s canFam3.chr35            26234822  7 +  26524999 --ggtctct--
i canFam3.chr35            I 1 I 4
s dasNov3.JH582591            48020 11 +    102524 gatgtctcttt
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     603093 412 +    730504 I

a score=4813830.000000
s hg38.chr6_GL000254v2_alt   894804 347 +   4827813 aagaaa--aa-aaa-------ttacacatacaaTTggctttaagcaattgctgttaa---aa--t--cttat-------------ttctgca------------atttttacaaaagcctgttaccatatgaacacatatccatc-gagccctc-tatattattagagcacaggaagagggccctgt--aggtgaggaaccttgaagtctaagtttcagtagtgtca---ta--agtccacccctgGATGGGACTCTCAATTTCCAGAATAAAATGGTAAACTAGAAGCAGAATAACTGAGTTATGTGAGGAAAGTAAAGCCCAAGGATCTTGAAAGAATCTACCAGGGTAGAGGAAGTATGAGGCATACAAATGGGATGAC--TGCATCCCAGGAGAGA
s panTro5.chr6             29857581 346 + 175400573 aag-aa--aa-aaa-------ttacacatacaaTTggctttaagcaattgctgttaa---aa--t--cttat-------------ttctgca------------atttttacaaaagcctgttaccatatgaacacatgtccatc-gagccctc-tatatcattagagcacaggaagagggccctgt--aggtgaggaaccttgaagtctaagtttcagtagtgtca---ta--agtccacccctgGATGGGACTCTCAATTTCCAGAATAAAATGGTAAACTAGAAGCAGAATAACTGAGTTATGTGAGGAAAGTAAAGCCCAAGGATCTTGAAAGAATCTACCAGGGTAGAGGAAGTATGAGGCATAGAAATGGGATGAC--TGCATCCCAGGAGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30091949 347 + 173848474 aagaaa--aa-aaa-------ttacacatacaaTTggctttaagcaattgctgttaa---aa--t--cttat-------------ttctgca------------atttttacaaaagcctgttaccatatgaacacatgtccatc-gagccctc-tatatcattagagcacaggaagagggccctgt--aggtgaggaaccttgaagtctaagtttcagtagtgtca---ta--agtccacccctgGATGGGACTCTCAATTTCCAGAATAAAATGGTAAACTAGAAGCAGAATAACTGAGTTATGTGAGGAAAGTAAAGCCCAAGGATCTTGAAAGAATCTACCAGGGTAGAGGAAGTATGAGGCATAGAAATGGGATGAC--TGCATCCCAGGAGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5898568 346 +   6154872 aag-aa--aa-aaa-------ttacacatacaaTTggctttaagcaattgctgttaa---aa--t--cttat-------------ttctgca------------atttttacaaaagcctgttaccatatgaacacatatccatc-gagccctc-tatattattagagcacaggaagagggccctgt--aggtgaggaaccttgaagtctaagtttcagtagtgtca---ta--agtccacccctgGATGGGACTCTCAATTTCCAGAATAAAATGGTAAACTAGAAGCAGAATAACTGAGTTATGTGAGGAAAGTAAAGCCCAAGGATCTTGAAAGAATCTACCAGGGTAGAGGAAGTATGAGGCATAGAAATGGGATGAC--TGCATCCCAGGAGAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74602796 345 + 122973662 aag-aa--aa-aaa-------ttacacatacaaTTggctttaagcaattgctgttaa---aa--t--cttat-------------ttctgca------------atttttacaaaagcctgttaccatacgaacacatatccatt-gagccctc-tatattattagagcacagtaagagggccctgt--aggtgaggaaccttgaagcctaagtttcagtagtgtca---ta--agtccacccc-GGATGGGACTCTCAATTTCCAGAATAAAATGGTAAACTAGAAGCAGAATAACTGAGTTATGTGAGGAAAGTAAAGCCCAAGGATCTTGAAAGAATCTACCAGGGTAGAGGAAGTGTGAGGCATAGAAATGGGATGAC--TGCATCCCAGGAGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30088143 346 + 172585720 aag-aa--aa-aaa-------ttacacatacaaTTggctttaagcaattgctgttaa---aa--t--cttat-------------ttctgca------------atttttacaaaagcctattaccatatgaacacatatccatc-gagccctc-tatattattacagcacaggaagagggccctgt--aggtgagaaaccttgaagcctaagtttcagtagtgtca---ta--agtccacccccgGATGGGACTCTCAATTTCCAGAATAAAATGGTAAACTAGAAGCAGAATAACTGAGCTATGTGAGGAAAGTAAAGCCCAAGGATCTTGAAAGAATCTACCAGGGTAGAGGAAGTATGAGGCATAGGAATGGGATGAC--TGCACCCCAGGAGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29751854 346 - 170955103 aag-aa--aa-aaa-------ttacaCATACAATTggctttaagcaattgctgttaa---aa--t--cttat-------------ttctgca------------atttttacaaaagcctattaccatatgaacacatatccatc-gagccctc-tatattattacagcacaggaagagggccctgt--aggtgagaaaccttgaagcctaagtttcagtagtgtca---ta--agtccacccccgGATGGGACTCTCAATTTCCAGAATAAAATGGTAAACTAGAAGCAGAATAACTGAGCTATGTGAGGAAAGTAAAGCCCAAGGATCTTGAAAGAATCTACCAGGGTAGAGGAAGTATGAGGCATAGGAATGGGATGAC--TGCACCCCAGGAGAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2799352 346 -   2996164 aag-aa--aa-aaa-------ttacaCATACAATTggctttaagcaattgctgttaa---aa--t--cttat-------------ttctgca------------atttttacaaaagcctattaccatatgaacacatatccatc-gagccctc-tatattattacagcacaggaagagggccctgt--aggtgagaaaccttgaagcctaagtttcagtagtgtca---ta--agtccacccccgGATGGGACTCTCAATTTCCAGAATAAAATGGTAAACTAGAAGCAGAATAACTGAGCTATGTGAGGAAAGTAAAGCCCAAGGATCTTGAAAGAATCTACCAGGGTAGAGGAAGTATGAGGCATAGGAATGGGATGAC--TGCACCCCAGGAGAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     550441 359 +    766320 aag-aa--aa-aaa-------ttacaCATACAATTggctttaagcaattgctgttaa---aa--t--cttattttacaaagattattttgca------------atttttacaaaagcctattaccatatgaacacatatccatc-gagccctc-tatattattacagcacaggaagagggccctgt--aggtgagaaatcttgaagcctaagtttcagtagtgtca---ta--agtccacccctgGATGGGACTCTCAATTTCCAGAATAAAATGGTAAACTAGAAGCAGAATAACTGAGTTATGTGAGGAAAGTAAAGCCCAAGGATCTTGAAAGAATCTACCAGGGTAGAGGAAGTATGAGGCATAGGAATGGGATGAC--TGCACCCCAGGAGAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29006529 346 -  71996105 aag-aa--aa-aaa-------ttacaCATACAATTggctttaagcaattgctgttaa---aa--t--cttat-------------ttctgca------------atttttacaaaagcctattaccatatgaacacatatccatc-gagccctc-tatattattacagcacaggaagagggccctgt--aggtgagaaaccttgaagcctaagtttcagtagtgtca---ta--agtccacccctgGATGGCACTCTCAATTTCCAGAATAAAATGGTAAACTAGAAGCAGAATAACTGAGTTATGTGAGGAAAGTAAAGCCCAAGGATCTTGAAAGAATCTACCAGGGTAGAGGAAGTATGAGGCATAGGAATGAGATGAC--TGCACCCCAGGAGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     182719 347 +    290775 aag-aa--aa-aaa-------ttacacatacaaTTggctttaagcaattgctgttaa---aa--t--cttat-------------ttctgca------------atttttacaaaagcctattaccatatgaacacatatccatc-gagccctcttgtattattacagcacaggaagagggccctgt--aggtgagaaatcttgaagcctaagtttcagtagtgtca---ta--agtccacccctgGATGGGACTCTCAATTTCCAGAATAAAATGGTAAACTAGAAGCAGAATAACTGAGTTATGTGAGGAAAGTAAAGCCCAAGGATCTTGAAAGAATCTACCAGGGTAGAGGAAGTATGAGGCATAGGAATGGGATGAC--TGCACCCCAGGAGAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2641456 346 -   3067355 aag-aa--aa-aaa-------ttacacatacaaTTggctttaagcaattgctgttaa---aa--t--cttat-------------ttctgca------------atttttacaaaagcctattaccatatgaacacatatccatc-gagccctc-tatattattagagcacaggaagagggccctgt--aggtgagaaaccttgaaacctaagtttcggtagtgtca---ta--agtccacccctgGATGGGACTCCCCATTTCCAGAATAAAATGGTAAACTAGAAGCAGAATAACTGAGTTATGTGAGGAAAGTAAAGCCCAAGGATCTTGAAAGAATCTACCAGGGTAGAGGAAGTATGAGGCATAGGAATGGGATGAC--TGCACCCCAGGAGAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       3012 342 +    132061 AAG--A--GA-GAA--------TACACATACAATTggctttaagcaattgctatctatatag--t--cttat-------------ttctgca------------atttttacaaaagcctattaccatatgaacacatatccatc-gagccctc-tata-----agagcacaggaagagggccctat--aagtgaggatctttgaagcctaagtttcagtagtgtca---ta--agtccacccctgGGTGGGACTCTTAATTTCCAGAATGAAATGGTAAACTAGAAGCAGAATCACTGACTTATGTGAGGAAAGTAAGGTCCAAAGATCTTGAAAGAATCTACCAGGGTAGAGGAAGTATGAGGCATAGGAATGGGATGAC--TGCATCCCAGAAGAGA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           230193 340 -    242197 aag-aa--aa-gaa--------tacaCATACAATTggctttaagcaattgctattga---aa--t--cttat-------------ttctgca------------atttttacaaaagcctattaccatatgaacacatatccacc-gagccctc-tata-----agagcacaggaagagggccctgt--aggtgaggattcttgaagcctaagtttcagtagtgtca---ta--agtccacccctgGATGGGACTCTCAGTTTCCAGAATGAAATGGTAAACTAGAAGCAGAATAACTGACTTATGTGAGGACAGTAAGGTCCAAAGATCTTGAAAGAATCTACCAGGGTAGAGGAAGTATGAGGCATAGGAATGGGATGAC--TGCATCCCAGGAGAGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     223872 340 -   1771730 aag-aa--aa-gaa--------tacaCATACAATTggctttaagcaattgctattaa---aa--t--cttat-------------ttctgca------------atttttacaaaagcctattaccatatgaacacatatccatc-gagccctc-tata-----agagcacaggaagagggccctgt--aggtgaggatccttgaagcctaagtttcagtagtgtca---ta--agtccacccctgGATGGGACTCTCAATTTCCAGAATGAAATGGTAAACTAGAAGCAGAATAACTGACTTATGTGAGGAAAGTAAGGTCCAAAGATCTTGAAAGAATCTACCAGGATAGAGAAAGTATGAGGCATAGGAATGGGATGAC--TGCATCCCAGGAGAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     305887 340 -    457564 aag-aa--aa-gaa--------tacaCATACAATTggctttaagcaattgctattaa---aa--t--cttat-------------ttctgca------------atgtttacaaaagcctattaccatatgaacacatatccatc-gagccctc-tata-----agagcacaggaagagggccctgt--aggtgaggatccttgaagcctaagtttcaatagtgtct---ta--agtccacccctgGATGGGACTCTCAATTTCCAGAATGAAATGGTAAACTAGAAGCAGAATAACTGACTTATGTGAGGAAAGTAAGGTCCAAAGATCTTGAAAGAATCTACCAGGCTAGAGGAAGTATGAGGCATAGGAATGGGATGAC--TGCATCCCAGGAGAGA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               108953 345 + 123392446 aaa-aa--aa-ata-------ttacacatacaaTTggctttaagcaaatgctgttaa---aag-t--cttat-------------ttttgca------------attattaccaaaacctattaccatttgaacaaat---tattagagcccac-tacgttattagagcacaggaagagggcca-gt--aggtgaggcaccctgaagctttagtttcatcagcttcacagta--aatcca-ccCT-GATGGGGCTCCCAGTTTCCTAAGTGGGATAGTAAACTGGAAGCCAAATAACTGAGTTACAGGAGGAAATTCAGGCCAAAGGATCTGGAAAGAGTCTACAAGGGCAGAGGCAGTATGAGGCACAGGAATGGGATGGC--TGCATCCCAGGAGAGG
i micMur3.chr6             I 3 I 124
s proCoq1.NW_012152574v1     603505 346 +    730504 aga-ga--aa-ata-------ttacacatacaaTTggctttaagcaattgctgttaa---aag-t--cttat-------------ttttgca------------attattaccaaaacctattaccatttgaacaaat---tattagagccctc-tacattattagagcacaggaagagggcca-gt--aggtgaggcaccttgaagctttaatttcattagcttcacagta--aatccacccct-gATGGGACTCCCAGTTTCTCGAGTGGGATAGTAAACTGGAAGTAGAATAACTGAGTTACAGGAGGAAATTCAGGGCAAAGGATCTGGACAGAGTCTACAAGGATAGAGGAAGTATGAGGCACAGGAATGGGCTGCC--TGCATCCCAGGAGAGG
i proCoq1.NW_012152574v1   I 412 C 0
s otoGar3.GL873550           117615 307 +  18854210 aga-aa--aa-aaa-------ttacacat--------------gcaattgctgttaa---aaa-t--cttat-------------ttttgaa------------attattaccaaaacttattacca--------------tatt-----------------ttagagcacagaaagagggtcatat--aggtaaggaaccttgaagctttagtttcatcagcttcatagta--aatcctgccctgGATGGGACTCCCAATTCCCAGAATGGTATACTAAACTAGAAGTAAAATAATTGAGTTACATGAGGAAATTCAGGCCAAAGGATCTTGAAAGTGGCTGCAAGGGTAGAAGACGTGTGAGGCACAGGAATGGGATGCC--TGCATCCCAGGAGAGA
i otoGar3.GL873550         I 5 C 0
s mm10.chr17               57937780 183 -  94987271 AAG-AA--GACAAA-------TTACAaa-acaattggttttaaataagtgctgttta---aa--taccttag-------------tttagta------------agttctccaaaggttggttagcatatgcaca-----------cagtctta----------agagctcaaaataaggacttagtcaaaatgaagaaccctgaagcttaa-----------ttca----------------------------------ttCCAGGAGAGAAGAGTATAT--------------------------------------------------------ATATACAA------------------------------------------------------
i mm10.chr17               I 2 C 0
s canFam3.chr35            26234833 311 +  26524999 aag-ag--aa-aaaataccaatcacaaatccaaTTgattttaaactactgctttgaa---aa--t--ctttc-------------ttttgca------------tttttgacaaaaagctgtgaccatgt----------------gag------cacattattagtgcacaagaagaga---ctct--gggcaaa------tggagcttaaactccattagcttcatagca--aatccacccctgGGTAGGACCCTCAATTTCCACAATGGAGTGGTAAATTACAAGCAGAATAATTA--CTGTG-GGGGAAAGCCAAGCCC-AGGACCTTGAAAGAGTCTACAAGAGTAGGGGAAGCATGGGGCA-----------GGCC--TGCATCCCA-CAGAGA
i canFam3.chr35            I 4 C 0
s dasNov3.JH582591            48031 335 +    102524 aag-aaacag-aaa-------ttgcgaagacaattggctttaaccaattgcggttga---aagat--ctcac-------------ttctaccttttttttttttttttttaccaaagcctacaatcac-tgaacacagtactg---gagccctc-cagtttattac--------aagtgccccctgt--aggtgggggaccctgacgcttaagtttcatcagctccg---tggcaaCCCACCCGGGGAC------------TTGCAGACTGGAGCGGAAAACTAGAAGCAGAAGCAGTGAGCTTAGGGAGCAAAGGCAGGC---GGGGGCTTGA----GTCTAAAAGGGTCGGTGGAGTG-GAGGCAAAGGACGGGTCTGTCAATGCAGGCCGGGAGAGG
i dasNov3.JH582591         C 0 C 0

a score=424268.000000
s hg38.chr6_GL000254v2_alt   895151 36 +   4827813 AGATGGCA----GAGAGTTCGGGTGCCTAGAAAAGGGAGA
s panTro5.chr6             29857927 36 + 175400573 AGATGGCA----GAGAGTTCGGGTGCCTAGAAAAGGGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30092296 36 + 173848474 AGATGGCA----GAGAGTTCGGGTGCCTAGAAAAGGGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5898914 36 +   6154872 AGATGGCA----GAGAGTTCGGGTGCCTAGAAAAGGGAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74603141 36 + 122973662 AGATGGCA----GAGAGTTCGGGTGCCTAGAAAAGGGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30088489 36 + 172585720 AGATGGCA----GAGAGTTCGGGTGCCTAGAAAAGGGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29752200 36 - 170955103 AGATGGCA----GAGAGTTCGGGTGCCTAGAAAAGGGAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2799698 36 -   2996164 AGATGGCA----GAGAGTTCGGGTGCCTAGAAAAGGGAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     550800 36 +    766320 AGATGGCA----GAGAGTTCGGGTGCCTAGAAAAGGGAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29006875 36 -  71996105 AGATGGCA----GAGAGTTCGGGTGCCTAGAAAAGGGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     183066 36 +    290775 AGATGGCA----GAGAGTTCGGGTGCCTAGAAAAGGGAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2641802 34 -   3067355 AGATGGC------AGAGTTCGGGTGCCTAGAAAAGGGAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       3354 34 +    132061 AGACAGT------AGAGTTCGGGTGCCTAAAAAAGGGAGA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           230533 34 -    242197 AGACAGC------AGAGTTGGAGTGCCTAGAAAAGGGAGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     224212 34 -   1771730 AGACAGC------AGAGTTCGGGTGCCTAGAAAAGGGAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     306227 34 -    457564 AGACAGC------AGAGTTCGGGTGCCTAGAAAAGGGAGA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     603851 37 +    730504 TGACTGCAGAGGGAGAGTTTGGGTGCCCAGAGGGAGA---
i proCoq1.NW_012152574v1   C 0 I 29
s otoGar3.GL873550           117922 40 +  18854210 AGACTGTAGAGGGAGAGTTTGGGTGACCAGAAAAGGGGAA
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57937963 26 -  94987271 --------------GAGTTTGGGTGCCCAGAAAAGGGAGA
i mm10.chr17               C 0 I 1
s canFam3.chr35            26235144 39 +  26524999 -AGCTGCAAAGGGAGAATCTGGGGGCCCAGGAAGGGGGGA
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            48366 21 +    102524 -------------------CTGGTGCCCAGGAACGAGGGA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               109298 124 + 123392446 I

a score=171717.000000
s hg38.chr6_GL000254v2_alt   895187 37 +   4827813 GTTTGTAAAATTACGTG--------------------------------------------------------------GC---aaaaaaaaaaaaaaaaaa
s panTro5.chr6             29857963 34 + 175400573 GTTTGTAAAATTACGTG--------------------------------------------------------------GC------AAAAAAAAAAAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30092332 29 + 173848474 GTTTGTAAAATTACGTG--------------------------------------------------------------GC-----------AAAAAAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5898950 36 +   6154872 GTTTGTAAAATTACGTG--------------------------------------------------------------GC----aaaaaaaaaaaaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74603177 40 + 122973662 TTTTGTAAAATTACGTG--------------------------------------------------------------GCaaaaaaaaaaaaaaaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30088525 33 + 172585720 GTTTGTAGAATTACATG--------------------------------------------------------------GC-------AAAAAAAAAAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29752236 30 - 170955103 GTTTGTAGAATTACATG--------------------------------------------------------------GC----------AAAAAAAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2799734 32 -   2996164 GTTTGTAGAATTACATG--------------------------------------------------------------GC--------AAAAAAAAAAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     550836 30 +    766320 GTTTGTAGAATTACATG--------------------------------------------------------------GC----------AAAAAAAAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29006911 31 -  71996105 GTTTGTAGAATTACATG--------------------------------------------------------------GC---------AAAAAAAAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     183102 30 +    290775 GTTTGTAGAATTACATG--------------------------------------------------------------GC----------AAAAAAAAAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2641836 35 -   3067355 GTTTGTAGAATTACATG--------------------------------------------------------------GC-----AAAAAAAAAAAAAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       3388 33 +    132061 GTTTGTAGAAATATATG--------------------------------------------------------------GC-------CAAAAAAAAAAGAG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           230567 95 -    242197 GTTTGTAGAAATACATGaaaaaaaaaaaaaaaaaaagaaaagaaaaaaaaaattttttttttaaaaaaaaatgaaaaaaaa-------aaaaaaaaaaaGAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     224246 60 -   1771730 GTTTGTAGAAATACATGGCaaaaaaaaaaaaaaaaaaaaaaaaa-----------------------------------aa-------aaaaaaaaaaaGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     306261 32 -    457564 GTTTGTAGAAATATGTG--------------------------------------------------------------GC-------CAAAAAAAAAAGA-
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           117963 28 +  18854210 TTCTGCAGAACTAGATA--------------------------------------------------------------GC----------AAAAAAATG--
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57937990 32 -  94987271 GTTTGCAGAAA-AGACA--------------------------------------------------------------GC-------AAAGAGGCAAGCAA
i mm10.chr17               I 1 I 4
s canFam3.chr35            26235184 21 +  26524999 TTTTGCAGACCTAAATG--------------------------------------------------------------AC----------AA---------
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            48387 22 +    102524 GTTTATGGGACCAGGTG--------------------------------------------------------------AC----------AAG--------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               109298 124 + 123392446 I
e proCoq1.NW_012152574v1     603888 29 +    730504 I

a score=1026751.000000
s hg38.chr6_GL000254v2_alt   895224 87 +   4827813 GTAGACAGACACAA-------CACTGATTCCCTTAGGGAATAATGGAGGTTGTCTAGG-AAGTA---CAGAAAAGGACCT--GTCTTCTTCCCACCCCAT
s panTro5.chr6             29857997 86 + 175400573 GTAGACAGACACAA-------CACTGATTCCCTTAGGGAATAATGGAGGTTGTCTAGG-AAGTA---CAGAAAAGGA-CT--GTCTTCTTCCCACCCCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30092361 86 + 173848474 GTAGACAGACACAA-------CACTGATTCCCTTAGGGAATAATGGAGGTTGTCTAGG-AAGTA---CAGAAAAGGA-CT--GTCTTCTTCCCACCCCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5898986 83 +   6154872 GTAGACAGACACAA-------CACTGATTCCCTTAGGGAATAATGGAGGTTGTCTAGG-AAGTA---CAGAAAAGGA-CT--G---TCTTCCCACCCCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74603217 86 + 122973662 GTAGACAGACACAA-------CACTGATTCCCTTAGGGAATAATGGAGGTTGTCTGGG-AGGTA---TAGAAAAGGA-CT--GTCTTCTTCCCACCCCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30088558 85 + 172585720 GTAGACAGACACAA-------CACTGATTCCCTTAGGGAATAATGGAGGTTGTCTGGG-AGGTA---GAG-AAAGGA-CT--GTCTTCTTCCCACCCCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29752266 85 - 170955103 GTAGACAGACACAA-------CACTGATTCCCTTAGGGAATAATGGAGGTTGTCTGGG-AGGTA---TAG-AAAGGA-CT--GTCTTCTTCCCACCCCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2799766 85 -   2996164 GTAGACAGACACAA-------CACTGATTCCCTTAGGGAATAATGGAGGTTGTCTGGG-AGGTA---TAG-AAAGGA-CT--GTCTTCTTCCCACCCCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     550866 85 +    766320 GTAGACAGACACAA-------CACTGATTCCCTTAGGGAATAATGGAGGTTGTCTGGG-AGGTA---TAG-AAAGGA-CT--GTCTTCTTCCCACCCCAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29006942 85 -  71996105 GTAGACAGACACAA-------CACTGATTCCCTTAGGGAATAATGGAGGTTGTCTGGG-AGGTA---TAG-AAAGGA-CT--GTCTTCTTCCCACCCCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     183132 85 +    290775 GTAGACAGACACAA-------CACTGATTCCCTTAGGGAATAATGGAGGTTGTCTGGG-AGGTA---TAG-AAAGGA-CT--GTCTTCTTCCCACCCCAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2641871 86 -   3067355 GTAGACAGACACAA-------CACTGATTCCCTTAGGGAACAATGGAGGTTGTCTGGG-AGGTA---TAGAAAAGGA-CT--GTCTTCTTCCCACCCCAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       3421 84 +    132061 GTAGACAA--ACAA-------CACTGATTCCCTTAGGGAATAATGGAGGTTGTCTGGG-AAGTA---TAGAAAAGGA-CT--GTCTTCTTCCCATCCAAT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           230662 86 -    242197 GTAGACAAACACAA-------CCCTGATTCCCTTAGGGAATAATGGAGGTTGTCTGGG-AAGTA---TAGAAAAGGA-CT--GTCTTCTTCCCATCCAAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     224306 86 -   1771730 GTAGACAAACACAA-------CACTGATTCCCTTAGGGAATAATGGAGGTGGTCTGGG-AAGTA---TAGAAAAGGA-CT--GTCTTCTTCCCATCCAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     306293 86 -    457564 GTAGACAAACACAA-------CACTGATTCCCTTAGGGAATAATGGAGGTTGTCTGGG-AAGTA---TAGAAAAGGA-CT--CTCTTCTTCCCATCCAAT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     603917 82 +    730504 GCAGACAGACACAA-------CACCAA-TCCCTTAGGGAATGATGGCAGTAGTCTGGGCAGGTA---CAGAAAAGGA-CT--G---TTCTCCCACCCCA-
i proCoq1.NW_012152574v1   I 29 C 0
s otoGar3.GL873550           117991 71 +  18854210 GTAGACAGACACAA-------CACCAATTCCCTTAGGGAATGACAGAGGTTGT---------------AGAAAAGGA-CG--G---TTCTCCCACCCCA-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57938026 88 -  94987271 GTAG-CAAACACAAAAGCAATCAATTATTCCCTCAAGGAATGATCAAGATTGTT---A-AAGTA---TAC-ACAAGA-CTCAGTCTTCTTCCATCTGC--
i mm10.chr17               I 4 C 0
s canFam3.chr35            26235205 86 +  26524999 GGTGTTGGACACAA-------GACGGAGTCCCTTGGTGAACGATGGAGGATGCCTGAG-AGTTA---TGGAAAAGGA-CT--GTCCTCTTCCCCTCCCCC
i canFam3.chr35            C 0 I 2
s dasNov3.JH582591            48409 54 +    102524 ------GTGCAGGA-------CACCGGATTCCCTGGGGAA-GGTGGAGGCTGT-GGGG-AGATAATCCAT------------------------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               109298 124 + 123392446 I

a score=3387656.000000
s hg38.chr6_GL000254v2_alt   895311 248 +   4827813 CCCTGAGTTGTTCTTCATCTTCTGATAATGCTG-CCTCCAATTTTAAGTC-----------T-TTTACCCTAATATGTTTCCACCCCCAGAGCTCC-------CCT----TCTCAA----TTTTTCTTAGTAGAATGTTTGATTTATTTCTGAGTCTTTACAATAAATCAATTATATAAGGAATGGT--GAGGGATGAATTCTAGAAG--------------------AGGGTGATGC-ATGGAAATTTCTAAGTTTA------------GAGAA-AGG-------------GAAAATTGG------AGTATT-TAAACCTGAAGAA-GGTGA
s panTro5.chr6             29858083 248 + 175400573 CCCTGAGTTGTTCTTCATCTTCTGATAATGCCG-CCTCCAATTTTAAGTC-----------T-TTTACCCTAATATGTTTCCACCCCCAGAGCTCC-------CCT----TCTCAA----TTTTTCTTAGTAGAATGTTTGATTTATTTCTGAGTCTTTACAATAAATCAATTATATAAGGAATGGT--GAGGGACGAATTCTAGAAG--------------------AGGGTGATGC-ATGGAAATTTCTAAGTTTA------------GAGAA-AGG-------------GAAAATTGG------AGTATT-TAAACCTGAAGAA-GGTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30092447 248 + 173848474 CCCTGAGTTGTTCTTCATCTTCTGATAATGCCG-CCTCCAATTTTAAGTC-----------T-TTTACCCTAATATGTTTCCACCCCCAGAGCTCC-------CCT----TCTCAA----TTTTTCTTAGTAGAATGTTTGATTTATTTCTGAGTCTTTACAATAAATCAATTATATAAGGAATGGT--GAGGGACGAATTCTAGAAG--------------------AGGGTGATGC-ATGGAAATTTCTAAGTTTA------------GAGAA-AGG-------------GAAAATTGG------AGTATT-TAAACCTGAAGAA-GGTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5899069 248 +   6154872 CCCTGAGTTGTTCTTCATCTTCTGATAATGCTG-CCTCCAATTTTAAGTC-----------T-TTTACCCTAATATGTTTCCACCCCTAGAGCTCC-------CCT----TCTCAA----TTTTTCTTAGTAGAATGTTTGATTTATTTCTGAGTCTTTACAATAAATCAATTATATAAGGAATGGT--GAGGGATGAATTCTAGAAG--------------------AGGGTGATGC-ATGGAAATTTCTAAGTTTA------------GAGAA-AGG-------------GAAAATTGG------AGTATT-TAAACCTGAAGAA-GGTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74603303 248 + 122973662 CCCTGAGTTGTTCTTCATCTTCTGATAATGCTG-CCTCCAATTTTAAGTC-----------T-TTTACCCTAACATGTTTCCACCCCCAGAGCTCC-------CCT----TCTCAA----TTTTTCTTAGTAGAATGTTTGATTTATTTCTGAGTCTTTACAATAAATCAATTATATAAGGAATGGT--GAGGGATGAATTCTAGAAG--------------------AGGGTGATGC-ATGGAAATTTCTAAGTTTA------------AAGAA-AGG-------------GAAAATTGG------AGTATT-TAAACCTGAAGAA-GGTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30088643 246 + 172585720 CCCTGAGTTGTTCTTCATCTTCTGATAGTGCTG-CCTCCAATTTTAAGTC-----------T-TTTACCCTAATATGTTTTGACCCCCAGAGCTCT-------CCT----TCTCAA----TTTTTCTCAGTACAATGTTTGATTTATTTCTGAGACTTTACAATAAATAAATTATATAAGGAATGGT--GAGGGATCAGTTCTAGAAG--------------------AGGGTGATGCAATGGAAAGTTCTAAGTTTA------------GAGAA-AGG-------------GAAAATTGG------AGTATT-TAAACCTT---AA-GGTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29752351 246 - 170955103 CCCTGAGTTGTTCTTCATCTTCTGATAGTGCTG-CCTCCAATTTTAAGTC-----------T-TTTACCCTAATATGTTTTGACCCCCAGAGCTCT-------CCT----TCTCAA----TTTTTCTCAGTACAATGTTTGATTTATTTCTGAGACTTTACAATAAATAAATTATATAAGGAATGGT--GAGGGATCAATTCTAGAAG--------------------AGGGTGATGCAATGGAAAGTTCTAAGTTTA------------GAGAA-AGG-------------GAAAATTGG------AGTATT-TAAACCTT---AA-GGTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2799851 246 -   2996164 CCCTGAGTTGTTCTTCATCTTCTGATAGTGCTG-CCTCCAATTTTAAGTC-----------T-TTTACCCTAATATGTTTTGACCCCCAGAGCTCT-------CCT----TCTCAA----TTTTTCTCAGTACAATGTTTGATTTATTTCTGAGACTTTACAATAAATAAATTATATAAGGAATGGT--GAGGGATCAATTCTAGAAG--------------------AGGGTGATGCAATGGAAAGTTCTAAGTTTA------------GAGAA-AGG-------------GAAAATTGG------AGTATT-TAAACCTT---AA-GGTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     550951 249 +    766320 CCCTGAGTTGTTCTTCATCTTCTGACAGTGCTG-CCTCCAATTTTAAGTC-----------T-TTTACCCTAATATGTTTTGACCCCCAGAGCTCT-------CCT----TCTCAA----TTTTTCTCAGTACAATGTTTGATTTATTTCTGAGACTTTACAATAAATTAATTATATAAGGAATGGT--GAGGGATCAATTCTAGAAG--------------------AGGGTGATGCAATGGAAAGTTCTAAGTTTA------------GAGAA-AGG-------------GAAAATTGG------AGTATT-TAAACCTTAAGAA-GGTGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29007027 248 -  71996105 CCCTGAGTTGTTCTTCATCTTCTGATAGTGCTG-CCTCCAATTTTAAGTC-----------T-TTTACCCTAATATGTTTCCACCCCCAGAGCTCT-------GCT----TCTCAA-----TTTTCTCAGTACAATGTTTGATTTATTTCTGAGACTTTACAATAAATTAATTATATAAGGAATGGT--GAGGGATCAATTCTAGAAG--------------------AGGGTGATGCAATGGAAAGTTCTAAGTTTA------------GAGAA-AGG-------------GAAAATTGG------AGTATT-TAAACCTTAAGAA-GGTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     183217 249 +    290775 CCCTGAGTTGTTCTTCATCTTCTGACAGTGCTG-CCTCCAATTTTAAGTC-----------T-TTTACCCTAATATGTTTTGACCCCCAGAGCTCT-------CCT----TCTCAA----TTTTTCTCAGTACAATGTTTGATTTATTTCTGAGACTTTACAATAAATTAATTATATAAGGAATGGT--GAGGGATCAATTCTAGAAG--------------------AGGGTGATGCAATGGAAAGTTCTAAGTTTA------------GAGAA-AGG-------------GAAAATTGG------AGTATT-TAAACCTTAAGAA-GGTGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2641957 249 -   3067355 CCCTGAGTTGTTCTTCATCTTCTGATAGTGCTG-CCTCCAATTTTAAGTC-----------T-TTTACCCTAATATGTTTCCACCCCCAGAGCTCT-------CCT----TCTCCA----TTTTTCTCAGTACAATGTTTGATTTATTTCTGAGACTTTACAATAAATTAATTATATAAGGAATGGT--GAGGGATCAGTTCTAGAAG--------------------AGGGTGATGCAATGGAAAGTTCTAAGTTTA------------GAGAA-AGG-------------GAAAATTGG------AGTATT-TAAACCTTAAGAA-GGTGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       3505 269 +    132061 ACCTGAGTTGTTCTTTATCTTCTGATAATGCTG-CCTCCAATTTTAAGTC-----------T-TTTACCCTAATATGTTTCCACTCCCAGAGCTCC-------CCT----TCTCAA----TTTTTCTAAGTACAATGTTTGATTTATTTCTGAGTCTTTACAATAAATCAGTTATTTAATGAATAGT--GAGGGATCAATTCTAGAAGGAGAGATCACCCTCTAGAATAAGGTGATGC-ATGGAAAGTTCTAAGTTTA------------GAGAA-GGG-------------AAATTTTTG------AATATTGTAAACCTTAAGAA-GGTGA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           230748 241 -    242197 CCCTGA---GTTCTTTATCTTCTGATAATGCTG-CCTCCAATTTTAAGTC-----------T-TTTACCCTAATATGTTTCCACTCCCAGAGCTCC-------CCT----TCTCAA----TTTTTCTAAGTACACTGTTTGATTTATTTCTGAGTCC------------------------AATGGC--GAGGGATCAATTCTAGAAGGAGAGATCACCCTCTAGAAGAATGTGATTC-ATGGAAAGTTCTAAGTTTA------------GAGAA-GGG-------------GAAAATTGG------AATATT-TAAACCTTAAGAA-GGTGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     224392 265 -   1771730 CCCTGA---GTTCTTTATCTTCTGATAATGCTG-CCTCCAACTTTAAGTC-----------T-TTTACCCTAAAACGTTTCCACTCCCAGAGCTCC-------CCT----TCTCAA----TTTTTCTAAGTATACTGTTTGATTTATTTCTGAGTCTTCACAATAAATCAATTATTTAATGAATGGT--GAGGGAGCAATTCTAGAAGGAGAGATCACCCTCTAGAAGAAGGTGATGC-ATGGAAAGTTCTAAGTTTA------------GAGAA-GGG-------------AAAAATTGG------AATATT-TAAACCTTAAGAA-GGTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     306379 268 -    457564 CCCTGAGTTGTTCTTTATCTTCTGATAATGCTG-CTTCCAATTTTAAGTC-----------T-TTTACCCTAATATGTTTCCACTCCCAGAGCTCC-------CCT----TCTCAA----TTTTTCTAAGTACAATGTTTGATTTATTTCTGAGTCTTTACAATAAATCAATTATTTAATGAATGGT--GAGGGATCAATTCTAGAAGGAGAAATCACCCTCTAGAAGAAGGTGATGC-ATGGAAAGTTCTAAGTTTA------------GAGAA-GGG-------------AAAAATTGG------AATATT-TAAACCTCAAGAA-GGTGA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               109422 238 + 123392446 CCCTGGGTTGTCCTTAATGTTCTGATAATCCTG-CCCCCAATTTTAAGTA-----------T-TTTACCCTACTATGTTTCCAGTCCCAGATCTCC-------TCT----TATCAG----TTTTTCTAAATACAATGTATGATTTGTTTCTGAGGCTTTATAATAAATCAATTATATAATGAATGAT--GAGGGATCAATTCTTGAAA--------------------------------------ATTCTAAGTTTA------------GAGAA-AGGGAATGAGTCTAGGGAAAATTGG------AGCATCTTAAACCTTAAG--------
i micMur3.chr6             I 124 C 0
s proCoq1.NW_012152574v1     603999 244 +    730504 CCCTGGGTTGTCCTTAATGTTCTGATAATTCTG-CCCCCAATTTTAAGTC-----------T-TTTGCCCTGATATGTTTCCAGTCCCAGATCTCC-------TCT----TATTAG----TTTTTCTAAATACAATGTATGATTTATTTCTGAGGCTTTATAATAAATCAATTATATAATGAATGGT--CAGGGATCAATTCTTGAAA--------------------------------------GTTCTAAGTTTA------------GCGAA-AGGGAATGAGTCTAGGGAAAACTGG------AGCATC-TAAACCTTAAGAA-GGTAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           118062 238 +  18854210 CTCTGGGTTGTCCTTGATGTTCTGATAATTCTACCCCCCAATTTTAAGTC-----------T-TTTGCCCTGATATGGTTCCACTCTCAGATCTCC-------TCT----TATCAG----TTTTTCTAAATACAATATATGATTTATTTGTGAGGCTTTATAATAAATCACTTATGTAACAAATGGT--AAGAGATCAATTCTTGAAA--------------------------------------GTTCTAAGTTTA------------GAGAA-AGGGAATGAGTCTACAGAAAATTGA------AGTACC-TAAACCTTAAG--------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57938114 264 -  94987271 CCTTGAATTATCAC---TGTTCTGGTCATTCTG-CCCCAATTTTTTTGCT-----------T-TTTCC------ATGTTTCCAATCCCATATCTCA-------CCG----ACT--------TTTTCTAAATGTAATGTATGATTTAATTCTGAATATTTACAGCAATTCCATTATAGAGTGAATAGC--AAAGGACCAGTCCTAGAAG----------------------AGTGATAC-AGAGGATGTTCTAAGTCTACGGGGGGTGGGGGGGGA-GGGTAGTTTTTTCCAGGGAGGTGGGGAGAGCAGTTTT-TTAACTTTAAGAA-GCTGA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26235293 279 +  26524999 CTCTGGGTTAGTCTCAGTGCCCTGACATTTCTG-CCCCCAATTCTAAGTCTTTTTTTATTTT-TTTACACTGATA-GTTTTCCGTCCCAGATATTC-------TTTCCAATCTTAACATTTTTTTCTACATATGACATATGATTTATTTCTGAGTCTTTACAATAATCCAGTTATATAACAGATGGA--GAGTAATCCATTGTAGAAT--------------------AGGGTTATGC-AAAGAAAGTTCTAAGTTTA------------GAGAA-AGGGACTGAGGCTAGGGGGAATTGG------AGTATT-TACGCTTTAAGAC-Aggga
i canFam3.chr35            I 2 I 185
s dasNov3.JH582591            48463 249 +    102524 -CCTGGGGTGGCCCTAGTGGCCTGACAAGTCTG-CC-CCAATGCTAGGGC-----------TCTTTACCCTGATACTTTTCCACCCCCAGATCTCCTTTCCATCCT----TATCAG----TGTTTTCCTAAATGACACAGGATTTGTTTCTGATCCTTCACAATA--------ATACAATGAAAGGGTAGAGGAAGCCACTGGAGAA---------------------AAGGTGGAGC-AGGGAGAGCTCTAAATTTG------------GAGGCTAAG-------------AACAATTAG------AGTATT-TACACCTTAGGAAGGGTGA
i dasNov3.JH582591         C 0 C 0

a score=776796.000000
s hg38.chr6_GL000254v2_alt   895559 57 +   4827813 GAGAGG------T-GAGATTCATAAAGGAAAAGAGAAAACGTGAGG-TCTAAGAATCGGGAGCAG
s panTro5.chr6             29858331 57 + 175400573 GAGAGG------T-GAGATTCATAAAGGAAAAGAGAAAACGTGAGG-TCTAAGAATTGGGAGCAG
i panTro5.chr6             C 0 I 3
s panPan2.chr6             30092695 57 + 173848474 GAGAGG------T-GAGATTCATAAAGGAAAAGAGAAAACGTGAGG-TCTAAGAATTGGGAGCAG
i panPan2.chr6             C 0 I 3
s gorGor5.CYUI01015250v1    5899317 57 +   6154872 GAGAGG------T-GAAATTCATAAAGGAAAAGAGAAAACGTGAGG-TCTAAGAATTGGGAGCAG
i gorGor5.CYUI01015250v1   C 0 I 3
s nomLeu3.chr1a            74603551 56 + 122973662 GAGAGG------T-GAGATTCATAAAGGAAAAGAGAAAACGTGAGG-CCTAAGAATTGGAAGCA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30088889 58 + 172585720 GAGAGG------T-GAGATTCATAAAGGAAAAGAGAAAACGTGAGGCTTTAAGACTTGGGAGCAG
i rheMac8.chr4             C 0 I 3
s macFas5.chr4             29752597 58 - 170955103 GAGAGG------T-GAGATTCATAAAGGAAAAGAGAAAACGTGAGGCTTTAAGACTTGGGAGCAG
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1    2800097 58 -   2996164 GAGAGG------T-GAGATTCATAAAGGAAAAGAGAAAACGTGAGGCTTTAAGACTTGGGAGCAG
i macNem1.NW_012011356v1   C 0 I 3
s cerAty1.NW_012002711v1     551200 58 +    766320 GAGAGG------T-GAGATTCATAAAGGAAAAGAGAAAACGTGAGGCTTTAAGACTTGGGAGCAG
i cerAty1.NW_012002711v1   C 0 I 3
s chlSab2.chr17            29007275 58 -  71996105 GAGAGG------T-GAGATTCATAAAGGAAAAGAGAAAACGTGAGGCTTTAAGACTTGGGAGCAG
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012099233v1     183466 58 +    290775 GAGAGG------T-GAGATTCATAAAGGAAAAGAGAAAACGTGAGGCTTTAAGACTTGGGAGCAG
i manLeu1.NW_012099233v1   C 0 I 3
s colAng1.NW_012115566v1    2642206 58 -   3067355 GAGAGG------T-GAGATTCATAAAGGAAAAGAGAAAACGTGAGGCTTTAAGAATTGGGAGCTG
i colAng1.NW_012115566v1   C 0 I 3
s calJac3.chrUn_GL286223       3774 56 +    132061 GAGAGG------T-GAGATTCATAAAGG-AAAGAGAAAATGTGAGG-CCTAAGAATTGGGAGCTG
i calJac3.chrUn_GL286223   C 0 I 3
s saiBol1.JH378357           230989 56 -    242197 GAGAGG------T-GAGATTCATAAAGG-AAAGAGAAAATGTGAGG-CCTAAGAATTGGGAGCAG
i saiBol1.JH378357         C 0 I 3
s cebCap1.NW_016107755v1     224657 54 -   1771730 GAGAGG------T-GAGATTCATAAAGG-AAAGAGAAAACGTGAGG-CCTAAGAATTGGGAGC--
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018509740v1     306647 56 -    457564 GAGAGG------T-GAGATTCATAAAGG-AAAGAGAAAACATGAGG-CTTAAGAATTGGGAGCAG
i aotNan1.NW_018509740v1   C 0 I 3
s micMur3.chr6               109660 49 + 123392446 --------------AAGATCCACAAAGGAAAAAAGAAAATGTGAGG--CTAAGAATAGGGAGCAG
i micMur3.chr6             C 0 I 14
s proCoq1.NW_012152574v1     604243 57 +    730504 GGGAGG------GTAAGATCCATAAAGGAAAAGAGAAAATGTGAGG--CTAAGAATTGGGGGCAG
i proCoq1.NW_012152574v1   C 0 I 14
s otoGar3.GL873550           118300 50 +  18854210 --------------CAGGTTCATAAAGGAAAAGAGAAAATGTAAGG-CCTAAGAATTGGGGGCAA
i otoGar3.GL873550         C 0 I 3
s mm10.chr17               57938378 59 -  94987271 GGGGGGCGGAGTT-GAGATTAATGAAGGAAAAATAAAAA----AGG-TCCAAGATTTGAAATCAG
i mm10.chr17               C 0 I 3
s canFam3.chr35            26235757 51 +  26524999 GGAGGG------T-GAGACTCATAAAGGACAAGAGAACATCTGAAG-------AACCATGAGCAG
i canFam3.chr35            I 185 I 3
s dasNov3.JH582591            48712 58 +    102524 GGGAGG------CCGGGCTTCATAAAGGGAAGAGAAAGGTGTGAGG-TCCAAGAACCAGGAGAGG
i dasNov3.JH582591         C 0 C 0

a score=84569.000000
s hg38.chr6_GL000254v2_alt   895616 12 +   4827813 GAAGATTTTTTT
s panTro5.chr6             29858391 12 + 175400573 GAAGATTTTTTT
i panTro5.chr6             I 3 C 0
s panPan2.chr6             30092755 12 + 173848474 GAAGATTTTTTT
i panPan2.chr6             I 3 C 0
s gorGor5.CYUI01015250v1    5899377 12 +   6154872 GAAGATTTTTTT
i gorGor5.CYUI01015250v1   I 3 C 0
s nomLeu3.chr1a            74603607 12 + 122973662 GAAGATTTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30088950 12 + 172585720 GAAGATTTTTTT
i rheMac8.chr4             I 3 C 0
s macFas5.chr4             29752658 12 - 170955103 GAAGATTTTTTT
i macFas5.chr4             I 3 C 0
s macNem1.NW_012011356v1    2800158 12 -   2996164 GAAGATTTTTTT
i macNem1.NW_012011356v1   I 3 C 0
s cerAty1.NW_012002711v1     551261 12 +    766320 GAAGATTTTTTT
i cerAty1.NW_012002711v1   I 3 C 0
s chlSab2.chr17            29007336 12 -  71996105 GAAGATTTTTTT
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012099233v1     183527 12 +    290775 GAAGATTTTTTT
i manLeu1.NW_012099233v1   I 3 C 0
s colAng1.NW_012115566v1    2642267 12 -   3067355 GAAGATTTTTTT
i colAng1.NW_012115566v1   I 3 C 0
s calJac3.chrUn_GL286223       3833 12 +    132061 GATTACTTTTTT
i calJac3.chrUn_GL286223   I 3 C 0
s saiBol1.JH378357           231048 12 -    242197 GATTACTTTTTT
i saiBol1.JH378357         I 3 C 0
s cebCap1.NW_016107755v1     224712 12 -   1771730 GAGTACTTTTTT
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018509740v1     306706 12 -    457564 GATTACTTTTTT
i aotNan1.NW_018509740v1   I 3 C 0
s otoGar3.GL873550           118353  9 +  18854210 GAAGATATG---
i otoGar3.GL873550         I 3 I 10
s mm10.chr17               57938440  9 -  94987271 GAACACACT---
i mm10.chr17               I 3 C 0
s canFam3.chr35            26235811  8 +  26524999 GGAGATAT----
i canFam3.chr35            I 3 C 0
s dasNov3.JH582591            48770  5 +    102524 --AAATG-----
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               109709 14 + 123392446 I
e proCoq1.NW_012152574v1     604300 14 +    730504 I

a score=306371.000000
s hg38.chr6_GL000254v2_alt   895628 19 +   4827813 AAAAGGTAAA------GGAAGGAAG
s panTro5.chr6             29858403 19 + 175400573 AAAAGGTAAA------GGAAGGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30092767 19 + 173848474 AAAAGGTAAA------GGAAGGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5899389 19 +   6154872 AAAAGGTAAA------GGAAGGAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74603619 19 + 122973662 AAAAGATAAA------GAAAGGAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30088962 19 + 172585720 AAAAGGTAAA------AGAAGGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29752670 19 - 170955103 AAAAGGTAAA------AGAAGGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2800170 19 -   2996164 AAAAGGTAAA------AGAAGGAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     551273 19 +    766320 AAAAGGTAAA------AGAAGGAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29007348 19 -  71996105 AAAAGGTAAA------AGAAGGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     183539 19 +    290775 AAAAGGTAAA------AGAAGGAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2642279 19 -   3067355 AAAAGGTAAA------GGAAGGAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       3845 18 +    132061 -TAAGGTAAA------GGAAGGAAG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           231060 18 -    242197 -AAAGGTAAA------GGAAGGAAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     224724 18 -   1771730 -AAAGGTAAA------GGAAGGAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     306718 18 -    457564 -AAAGGTAAA------GGAAGGAAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               109723 19 + 123392446 AAAAGGTAAA------GGAAAGAAA
i micMur3.chr6             I 14 C 0
s proCoq1.NW_012152574v1     604314 19 +    730504 AAAAGGTAAA------GGAAGGAAA
i proCoq1.NW_012152574v1   I 14 C 0
s otoGar3.GL873550           118372 19 +  18854210 AAAAGGTAAA------AGAAAGAAA
i otoGar3.GL873550         I 10 C 0
s mm10.chr17               57938449 24 -  94987271 -AAAGGAAAGGAGGGTGGGGGGAAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26235819 16 +  26524999 ---AGGAAGA------GGAAGGAAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            48775 19 +    102524 AAAAGAGAGG------GGGTGGAGG
i dasNov3.JH582591         C 0 T 2252

a score=61459.000000
s hg38.chr6_GL000254v2_alt   895647 5 +   4827813 CCCCC
s panTro5.chr6             29858422 5 + 175400573 CCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30092786 5 + 173848474 CCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5899408 5 +   6154872 CCCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74603638 5 + 122973662 CCCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30088981 5 + 172585720 CCCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29752689 5 - 170955103 CCCAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2800189 5 -   2996164 CCCAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     551292 5 +    766320 CCCAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29007367 5 -  71996105 CCCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     183558 5 +    290775 CCCAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2642298 5 -   3067355 CCCAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       3863 5 +    132061 CCCCC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           231078 5 -    242197 CCCGC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     224742 5 -   1771730 CCCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     306736 5 -    457564 CCCCC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               109742 5 + 123392446 CCCCC
i micMur3.chr6             C 0 I 83
s proCoq1.NW_012152574v1     604333 5 +    730504 CCCCC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           118391 5 +  18854210 CCCCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57938473 4 -  94987271 CCCA-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26235835 5 +  26524999 CCTTG
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            48794 2252 +    102524 T

a score=15523.000000
s hg38.chr6_GL000254v2_alt   895652 2 +   4827813 AA-
s panTro5.chr6             29858427 2 + 175400573 AA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30092791 2 + 173848474 AA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5899413 2 +   6154872 AA-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74603643 2 + 122973662 CA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30088986 2 + 172585720 AA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29752694 2 - 170955103 AA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2800194 2 -   2996164 AA-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     551297 2 +    766320 AA-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29007372 2 -  71996105 AA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     183563 2 +    290775 AA-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2642303 2 -   3067355 AA-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       3868 2 +    132061 AA-
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           231083 2 -    242197 AA-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     224747 2 -   1771730 AA-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     306741 2 -    457564 AA-
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     604338 2 +    730504 AA-
i proCoq1.NW_012152574v1   C 0 I 18
s otoGar3.GL873550           118396 2 +  18854210 AA-
i otoGar3.GL873550         C 0 I 4
s canFam3.chr35            26235840 2 +  26524999 -GT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               109747 83 + 123392446 I
e mm10.chr17               57938477 0 -  94987271 C
e dasNov3.JH582591            48794 2252 +    102524 T

a score=127697.000000
s hg38.chr6_GL000254v2_alt   895654 12 +   4827813 ---CCTACAGAGGAT
s panTro5.chr6             29858429 12 + 175400573 ---CCTACAGAGGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30092793 12 + 173848474 ---CCTACAGAGGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5899415 12 +   6154872 ---CCTACAGAGGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74603645 12 + 122973662 ---CCTACAGAGGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30088988 12 + 172585720 ---CCTACAGAGGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29752696 12 - 170955103 ---CCTACAGAGGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2800196 12 -   2996164 ---CCTACAGAGGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     551299 12 +    766320 ---CCTACAGAGGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29007374 12 -  71996105 ---CCTACAGAGGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     183565 12 +    290775 ---CCTACAGAGGAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2642305 12 -   3067355 ---CCTGCAGAGGAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       3870 12 +    132061 ---CATACAGAGGAT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           231085 12 -    242197 ---CATACAGAGGAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     224749 12 -   1771730 ---CATACAGAGGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     306743 12 -    457564 ---CATACAGAGGAT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           118402 12 +  18854210 ---CACAAAGTGGAT
i otoGar3.GL873550         I 4 C 0
s mm10.chr17               57938477  9 -  94987271 ------ACAGAAAGG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26235842 15 +  26524999 GCAGATAAAGTGAAC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               109747 83 + 123392446 I
e dasNov3.JH582591            48794 2252 +    102524 T
e proCoq1.NW_012152574v1     604340 18 +    730504 I

a score=19351.000000
s hg38.chr6_GL000254v2_alt   895666 3 +   4827813 -ACC
s panTro5.chr6             29858441 3 + 175400573 -ACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30092805 3 + 173848474 -ACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5899427 3 +   6154872 -ACC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74603657 3 + 122973662 -ACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30089000 3 + 172585720 -ACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29752708 3 - 170955103 -ACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2800208 3 -   2996164 -ACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     551311 3 +    766320 -ACC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29007386 3 -  71996105 -ACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     183577 3 +    290775 -ACC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2642317 3 -   3067355 -ATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       3882 3 +    132061 -ACT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           231097 3 -    242197 -ACT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     224761 3 -   1771730 -ACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     306755 3 -    457564 -ACT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           118414 3 +  18854210 -ACT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57938486 3 -  94987271 -ACC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26235857 2 +  26524999 -AC-
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            46542 3 +    102524 AAG-
i dasNov3.JH582591         T 2252 C 0
e micMur3.chr6               109747 83 + 123392446 I
e proCoq1.NW_012152574v1     604340 18 +    730504 I

a score=394634.000000
s hg38.chr6_GL000254v2_alt   895669 31 +   4827813 GGGGACTGCAAGAGGAAGTTTGAGGCAGGTG
s panTro5.chr6             29858444 31 + 175400573 GGGGACTGCAAGAGGAAGTTTGAGGCAGGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30092808 31 + 173848474 GGGGACTGCAAGAGGAAGTTTGAGGCAGGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5899430 31 +   6154872 GGGGACTGCAAGAGGAAGTTTGAGGCAGGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74603660 31 + 122973662 GGGGACTGCAAGAGGAAGTTTGAGGCAGGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30089003 31 + 172585720 CGGGACTGCAAGAGGAAGTTTGAGGCAAGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29752711 31 - 170955103 CGGGACTGCAAGAGGAAGTTTGAGGCAAGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2800211 31 -   2996164 CGGGACTGCAAGAGGAAGTTTGAGGCAAGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     551314 31 +    766320 CGGGACTGCAAGAGGAAGTTTGAGGCAAGTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29007389 31 -  71996105 CGGGACTGCAAGAGGAAGTTTGAGGCAAGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     183580 31 +    290775 CGGGACTGCAAGAGGAAGTTTGAGGCAAGTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2642320 31 -   3067355 CGGGACTGCAAGAGGAAGCTTGAGGCAAGTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       3885 31 +    132061 AGGGACTTTAAGAGGAAGTTTGAGGCAGGTG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           231100 31 -    242197 AGGGACTGTAAAAGTAAGTTTGAGGCAGGTG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     224764 31 -   1771730 AGGGACTGTAAGAGGAAGTTTCAGGCAGGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     306758 31 -    457564 AGGGATTGTAAGAGGAAGTTTGAGGCAGGTG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     604358 31 +    730504 GGGGACAGCAGGAAGAAGTATGAGGCAGGTA
i proCoq1.NW_012152574v1   I 18 I 31
s otoGar3.GL873550           118417 31 +  18854210 GGGAACTGCATGAAGAAGTCTGAGACACATA
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57938489 24 -  94987271 -------GTGGAACCAAGTCTGAGGCAGGTG
i mm10.chr17               C 0 I 1
s canFam3.chr35            26235859 31 +  26524999 GGGGGCTACAAAAGGGGCCTGGAAACAGCTG
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            46545 18 +    102524 GGGGACAGCCAGAAGGGG-------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               109747 83 + 123392446 I

a score=346164.000000
s hg38.chr6_GL000254v2_alt   895700 27 +   4827813 ATGGAGGAAAAAG--GGACTTTCATCTCC
s panTro5.chr6             29858475 27 + 175400573 ATGGAGGAAAAAG--GGACTTTCATCTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30092839 27 + 173848474 ATGGAGGAAAAAG--GGACTTTCATCTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5899461 27 +   6154872 ATGGAGGAAAAAG--GGACTTTCATCTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74603691 27 + 122973662 ATGGAGGAAAAAG--GGACTTTCATCTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30089034 27 + 172585720 ATGGAGGAAAAAG--GGACTTTCATCTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29752742 27 - 170955103 ATGGAGGAAAAAG--GGACTTTCATCTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2800242 27 -   2996164 ATGGAGGAAAAAG--GGACTTTCATCTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     551345 27 +    766320 ATGGAGGAAAAAG--GGACTTTCATCTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29007420 27 -  71996105 ATGGAGGAAAAAG--GGACTTTCATCTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     183611 27 +    290775 ATGGAGGAAAAAG--GGACTTTCATCTCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2642351 27 -   3067355 ATGGAGGAAAAAG--GGACTTTCATCTCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       3916 27 +    132061 ACAGAGGAAAAAG--GGACTTTCATCTCC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           231131 27 -    242197 ACGGAGGAAAAAG--GGACTTTCATCTCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     224795 27 -   1771730 ACAGAGGAAAAAG--GGACTTTCATCTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     306789 27 -    457564 ACGGAGGAAAAAG--GGACTTTCATCTCC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           118449 29 +  18854210 ATGGAAGGAAGGACTGGGCTGTCACCTCC
i otoGar3.GL873550         I 1 I 2
s mm10.chr17               57938514 26 -  94987271 GTGGTGTAAAGAT--AGG-TTTCACCTGC
i mm10.chr17               I 1 I 1
s canFam3.chr35            26235891 29 +  26524999 GAGGGGGGAAGAGTTGGGTTTTCACCTCC
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            46563 27 +    102524 GAGGGGGAGGGCT--GCGCTTCGGCCTCC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               109747 83 + 123392446 I
e proCoq1.NW_012152574v1     604389 31 +    730504 I

a score=41026.000000
s hg38.chr6_GL000254v2_alt   895727 4 +   4827813 -CCTT
s panTro5.chr6             29858502 4 + 175400573 -CCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30092866 4 + 173848474 -CCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5899488 4 +   6154872 -CCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74603718 4 + 122973662 -CCCT
i nomLeu3.chr1a            C 0 M 725
s rheMac8.chr4             30089061 4 + 172585720 -CCCT
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29752769 4 - 170955103 -CCCT
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2800269 4 -   2996164 -CCCT
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012002711v1     551372 4 +    766320 -CCCT
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17            29007447 4 -  71996105 -CCAT
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012099233v1     183638 4 +    290775 -CCCT
i manLeu1.NW_012099233v1   C 0 I 1
s colAng1.NW_012115566v1    2642378 4 -   3067355 -CCCT
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chrUn_GL286223       3943 4 +    132061 -CCCT
i calJac3.chrUn_GL286223   C 0 I 1
s saiBol1.JH378357           231158 4 -    242197 -CCCT
i saiBol1.JH378357         C 0 I 1
s cebCap1.NW_016107755v1     224822 4 -   1771730 -CCCT
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018509740v1     306816 4 -    457564 -CCCT
i aotNan1.NW_018509740v1   C 0 I 1
s micMur3.chr6               109830 4 + 123392446 -CCTT
i micMur3.chr6             I 83 C 0
s proCoq1.NW_012152574v1     604420 4 +    730504 -CCTT
i proCoq1.NW_012152574v1   I 31 C 0
s otoGar3.GL873550           118480 3 +  18854210 --CTT
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               57938541 4 -  94987271 -TCCT
i mm10.chr17               I 1 C 0
s canFam3.chr35            26235920 4 +  26524999 -CTCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            46590 3 +    102524 TCC--
i dasNov3.JH582591         C 0 C 0

a score=7641462.000000
s hg38.chr6_GL000254v2_alt   895731 461 +   4827813 TCCAGTG---TCCTCCCCCACATT-TTTATAGCTCTCCATTCTTTCCCATTATCCATTCCCACCCCACTCCCATCCTCACACAAGCGTCCTCATCAGCTGCATGCAGGCAGCTGTTCCCCTCACCCTGGCAGTGGGGCTTGGGGGTGCTCCACTGGCCCTGACTACAGATGCTCCGGGAGCTGCCCACCAGATGGAAGTCGGGGTCACACCGGAAATCCACCCGGGCTCCGTCCAGAGCTGGGAGGTCCCCACCCGTCAGGAAAACCTTCCCATTTTCCAGGGTCAAATAAGACTTGGAGCAGATTCGGACTGTGGAGAGATA--GGAAAAT-AAGAAGAGAGGCGAGTTGAAGAAGGCTCTTTCCCTTTAAAGAGCAGGGGACTCAGGTGCAGGTTTGGGTCCACAAGCATCCTGCTCTAAAGAAAATCACATGTGAAAAGGATTTGCCTACCTATCTTCCAATCCT
s panTro5.chr6             29858506 461 + 175400573 TCCAATG---TCCTCCCCCACATT-TTTATAGCTCCCCATTCTTTCCCATTATCCATTCCCACCCCACTCCCATCCTCACACAAGCGTCCTCATCAGCTGCATGCAGGCAGCTGTTCCCCTCACCCTGGCAGTGGGGCTTGGGGGTGCTCCACTGGCCCTGACTACAGATGCTCCGGGAGCTGCCCACCAGATGGAAGTCGGGGTCACACCGGAAATCCACCCGGGCTCCGTCCAGAGCTGGGAGGTCCCCACCCGTCAGGAAAACTTTCCCATTTTCCAGGGTCAAATAAGACTTGGAGCAGATTCGGACTGTGGAGAGATA--GGAAAAT-AAGAAGAGAGGCGAGTTGAAGAAGGCTCTTTCCCTTTAAAGAGCAGGGGACTCAGGTGCAGGTTTGGGTCCACAAGCATCCTGCTCTAAAGAAAATCACATGTGAAAAGGATTTGCCTACCTATCTTCCAATCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30092870 461 + 173848474 TCCAATG---TCCTCCCCCACATT-TTTATAGCTCCCCATTCTTTCCCATTATCCATTCCCACCCCACTCCCATCCTCACACAAGCGTCCTCATCAGCTGCATGCAGGCAGCTGTTCCCCTCACCCTGGCAGTGGGGCTTGGGGGTGCTCCACTGGCCCTGACTACAGATGCTCCGGGAGCTGCCCACCAGATGGAAGTCGGGGTCACACCGGAAATCCACCCGGGCTCCGTCCAGAGCTGGGAGGTCCCCACCCGTCAGGAAAACTTTCCCATTTTCCAGGGTCAAATAAGACTTGGAGCAGATTCGGACTGTGGAGAGATA--GGAAAAT-AAGAAGAGAGGCGAGTTGAAGAAGGCTCTTTCCCTTTAAAGAGCAGGGGACTCAGGTGCAGGTTTGGGTCCACAAGCATCCTGCTCTAAAGAAAATCACATGTGAAAAGGATTTGCCTACCTATCTTCCAATCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5899492 461 +   6154872 TCCAGTG---TCCTCCCCCACATT-TTTATAGCTCCCCATTCTTTCCCATTATCCATTCCCACCCCACTCCCATCCTCACACAAGCGTCCTCATCAGCTGCATGCAGGCAGCTGTTCCCCTCACCCTGGCAGTGGGGCTTGGGGGTGCTCCACTGGCCCTGACTACAGATGCTCCGGGAGCTGCCCACCAGATGGAAGTCGGGGTCACACCGGAAATCCACCCGGGCTCCGTCCAGAGCTGGGAGGTCCCCACCCGTCAGGAAAACCTTCCCATTTTCCAGGGTCAAATAAGACTTGGAGCAGATTCGGACTGTGGAGAGATA--GGAAAAT-AAGAAGAGAGGCGAGTTGAAGAAGGCTCTTTCCCTTTAAAGAGCAGGGGACTCAGGTGCAGGTTTGGGTCCACAAGCATCCTGCTCTAAAGAAAATCACATGTGAAAAGGATTTGCCTACCTATCTTCCAATCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30089066 461 + 172585720 TCCAATG---TCCTCCCCCACATT-TTTATAGCTCCCCATTCTTTCCCATTATCCATTCCCACCCCACTCCCATCCTCACACAAGCGTCCTCATCAGCTGCATGCAGGCAGCTGTTCCCCTCACCCTGGCAGTGGGGCTTGGGGGTGCTCCACTGGCCCTGACTACAGATGCTCCGGGAGCTGCCCACCAGATGGAAGTCGGGGTCACACCGGAAATCCACCCGGGCTCCGTCCAGAGCTGGGAGGTCCCCACCCGTCAGGAAAACCTTCCCATTTTCCAGGGTCAAATAAGACTTGGAGCAGATTCGGACTGTGGAGAGACA--GGAAAAT-AAGAAGAGAGGCGAGTTGGAGAAGGCTTTTTCCCTTTAAAGAGCAGGGGACTCAGGTGTGGGTTTGGGTCCACAAGCATCCTGCTCTAAAGAAAATCGCATGTGAAAAGGATTTGCCTACCTATCTTCCAATCCT
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29752774 461 - 170955103 TCCAATG---TCCTCCCCCACATT-TTTAGAGCTCCCCATTCTTTCCCATTATCCATTCCCACCCCACTCCCATCCTCACACAAGCGTCCTCATCAGCTGCATGCAGGCAGCTGTTCCCCTCACCCTGGCAGTGGGGCTTGGGGGTGCTCCACTGGCCCTGACTACAGATGCTCCGGGAGCTGCCCACCAGATGGAAGTCGGGGTCACACCGGAAATCCACCCGGGCTCCGTCCAGAGCTGGGAGGTCCCCACCCGTCAGGAAAACCTTCCCATTTTCCAGGGTCAAATAAGACTTGGAGCAGATTCGGACTGTGGAGAGACA--GGAAAAT-AAGAAGAGAGGCGAGTTGGAGAAGGCTTTTTCCCTTTAAAGAGCAGGGGACTCAGGTGTGGGTTTGGGTCCACAAGCACCCTGCTCTAAAGAAAATCGCATGTGAAAAGGATTTGCCTACCTATCTTCCAATCCT
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2800274 461 -   2996164 TCCAATG---TCCTCCCCCACATT-TTTATAGCTCCCCATTCTTTCCCATTATCCATTCCCACCCCACTCCCGTCCTCACACAAGCGTCCTCATCAGCTGCATGCAGGCAGCTGTTCCCCTCACCCTGGCAGTGGGGCTTGGGGGTGCTCCACTGGCCCTGACTACAGATGCTCCGGGAGCTGCCCACCAGATGGAAGTCGGGGTCACACCGGAAATCCACCCGGGCTCCGTCCAGAGCTGGGAGGTCCCCACCCGTCAGGAAAACCTTCCCATTTTCCAGGGTCAAATAAGACTTGGAGCAGATTCGGACTGTGGAGAGACA--GGAAAAT-AAGAAGAGAGGCGAGTTGGAGAAGGCTTTTTCCCTTTAAAGAGCAGGGGACTCAGGTGTGGGTTTGGGTCCACAAGCATCCTGCTCTAAAGAAAATCGCATGTGAAAAGGATTTGCCTACCTATCTTCCAATCCT
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1     551377 461 +    766320 TCCAATG---TCCTCCCCCACATT-TTTATAGCTCCCCATTCTTTCCCATTATCCATTCCCACCCCACTCCCGTCCTCACACAAGCGTCCTCATCAGCTGCATGCAGGCAGCTGTTCCCCTCACCCTGGCAGTGGGGCTTGGGGGTGCTCCACTGGCCCTGACTACAGATGCTCCGGGAGCTGCCCACCAGATGGAAGTCGGGGTCACACCGGAAATCCACCCGGGCTCCGTCCAGAGCTGGGAGGTCCCCACCCGTCAGGAAAACCTTCCCATTTTCCAGGGTCAAATAAGACTTGGAGCAGATTCGGACTGTGGAGAGACA--GGAAAAT-AAGAAGAGAGGCGAGTTGGAGAAGGCTCTTTCCCTTTAAAGAGCAGGGGACTCAGGTGTGGGTTTGGGTCCACAAGCATCCTGCTCTAAAGAAAATCACATGTGAAAAGGATTTGCCTACCTATCTTCCAATCCT
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17            29007452 461 -  71996105 TCCAATG---TCCTCCCCCCCATT-TTTATAGCTCCCCATTCTTTCCCATTATCCATTCCCACCCCACTCCCATCCTCATACAAGCGTCCTCATCAGCTGCATGCAGGCAGCTGTTCCCCTCACCCTGGCAGTGGGGCTTGGGGGTGCTCCACTGGCCCTGACTACAGATGCTCCGGGAGCTGCCCACCAGATGGAAGTCGGGGTCACACCGGAAATCCACCCGGGCTCCGTCCAGAGCTGGGAGGTCCCCACCCGTCAGGAAAACCTTCCCATTTTCCAGGGTCAAATAAGACTTGGAGCAGATTCGGACTGTGGAGAGACA--GGAAAAT-AAGAAGAGAGGCGAGTTGGAGAAGGCTCTTTCCCTTTAAAGAGCAGGGGACTCAGGTGTGGGTTTGGGTCCACAAGCATCCTGCTCTAAAGAAAATCACATGTGAAAAGGATTTGCCTACCTATCTTCCAATCCT
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012099233v1     183643 461 +    290775 TCCAATG---TCCTCCCCCACATT-TTTATAGCTCCCCATTCTTTCCCATTATCCATTCCCACCCCACTCCCGTCCTCACACAAGCGTCCTCATCAGCTGCATGCAGGCAGCTGTTCCCCTCACCCTGGCAGTGGGGCTTGGGGGTGCTCCACTGGCCCTGACTACAGATGCTCCGGGAGCTGCCCACCAGATGGAAGTCGGGGTCACACCGGAAATCCACCCGGGCTCCGTCCAGAGCTGGGAGGTCCCCACCCGTCAGGAAAACCTTCCCATTTTCCAGGGTCAAATAAGACTTGGAGCAGATTCGGACTGTGGAGAGACA--GGAAAAT-AAGAAGAGAGGCGAGTTGGAGAAGGCTCTTTCCCTTTAAAGAGCAGGGGACTCAGGTGTGGGTTTGGGTCCACAAGCATCCTGCTCTAAAGAAAATCACATGTGAAAAGGATTTGCCTACCTATCTTCCAATCCT
i manLeu1.NW_012099233v1   I 1 C 0
s colAng1.NW_012115566v1    2642383 444 -   3067355 TCCAATG---TCCTCCCCCACATT-TTTGTAGCTCCCCATTCTTTCCCATTATCCATTCCCACCCCACTCCCATCCTCACACAAGCGTCCTCATCAGCTGCATGCAGGCAGCTGTTCCCCTCACCCTGGCAGTGGGGCTTGGGGGTGCTCCACTGGCCCTGACTACAGATGCTCCGGGAGCTGCCCACCAGATGGAAGTCGGGGTCACACCGGAAATCCACCCGGGCTCCGTCCAGAGCTGGGAGGTCCCCACCCGTCAGGAAAACCTTCCCATTTTCCAGGGTCAAATAAGACTTGGAGCAGATTCGGACTGTGGAGAGACA--GGAAAAT-AAGAAGAGAGGCGAGTTGGAGAAGGCTCTTTCTCTTTAAAGAGCAGGGGACTCAGGTGTGGGTTTGGGTCCACAAGCATCCTGCT-----------------TGAAAAGGATTTGCCTACCTATCTTCCAATCCT
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chrUn_GL286223       3948 461 +    132061 TCCAATG---CCCTCCCCCATATT-TTTATAGCTCCCCATTCTTTCCCATCATCCATTCCCACCCCACTCCCATCCTCACACAAGCGTCCTCATCAGCTGCATGCAGGCAGCCGTTCCCCTCACCCTGGCAGTGGGGCTTGGGGGTGCTCCACTGGCCCTGACTACAGATGCTCCGGGAGCTGCCCACCAGATGGAAGTCGGGGTCACACCGGAAATCCACCCGGGCTCCGTCCAGAGCTGGGAGATCCCCACCCGTCAGGAAAACCTTCCCATTTTCCAGGGTCAAATAAGACTTGGAGCAGATTCGGACTGTGGAGAGACA--GGAAAAT-AAGAGGAGAGGCAAGTTGGAGAAGGCTCTTTCCCTTTAAAGAGCAGGGGACTGAGGTGTGGGTTTGGGTCCACAAGCATCCTGCGCTAAAGAAAATCACACGTGGAAAGGATTTGCCTACCTGCCTTCCAATCCT
i calJac3.chrUn_GL286223   I 1 C 0
s saiBol1.JH378357           231163 461 -    242197 TCCAATG---CCCTCCCCCACATT-TTTATAGCTCCCCATTCTTTCCCGTCATCCATTCCCACCCCACTCCCATCCTCACACAAGCGTCCTCATCAGCTGCATGCAGGCAGCTGTTCCCCTCACCCTGGCAGTGGGGCTTGGGGGTGCTCCACTGGCCCTGACTACAGATGCTCCGGGAGCTGCCCACCAGATGGAAGTCGGGGTCACACCGGAAATCCACCCGGGCTCCGTCCAGAGCTGGGAGATCCCCACCCGTCAGGAAAACCTTCCCATTTTCCAGGGTCAAATAAGACTTGGAGCAGATTCGGACTGTGGAGAGACA--GGAAAAT-AAGAAGAGAGGCAAGTTGGAGAAGTCTCTTTCCCTTTAAAGAGCTGGGGACTGAGGTGTGGGTTTGGGTCCTCAAGCACCCTGTGCTAAAGAAAATCACACGTGGAAAGGATTTGCCTACCTATCTTCCAGTCCT
i saiBol1.JH378357         I 1 C 0
s cebCap1.NW_016107755v1     224827 461 -   1771730 TCCAGTG---CCCTCCCCCACATT-TTTATAGCTCCCCATTCTTTCCCATCATCCATTCCCACCCCACTCCCATCCTCACACAAGCGTCCTCATCAGCTGCATGCAGGCAGCTGTTCCCCTCACCCTGGCAGTGGGGCTTGGGGGTGCTCCACTGGCCCTGACTACAGATGCTCCGGGAGCTGCCCACCAGATGGAAGTCGGGGTCACACCGGAAATCCACCCGGGCTCCGTCCAGAGCTGGGAGATCCCCACCCGTCAGGAAAACCTTCCCATTTTCCAGGGTCAAATAAGACTTGGAGCAGATTCGGACTGTGGAGAGACA--GGAAAAT-AAGAAGAGAGGCAAGTTGGAGAAGGCTCTTTCCCTTTAAAGAGCAGGGGACTGAGGTGTGGGTTTGGGTCCACAAGCATCCTGTGCTAAAGAAAATCACATGTGGAAAGGATTTGCCTACCTATCTTCCAATCCT
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018509740v1     306821 461 -    457564 TCCAATG---CCCTCCCCCACATT-TTTATAGCTCCCCATTCTTTCCCATCATCCATTCCCACCCCACTCCCATCCTCACACAAGCGTCCTCATCAGCTGCATGCAGGCAGCTGTTCCCCTCACCCTGGCAGTGGGGCTTGGGGGTGCTCCACTGGCCCTGACTACAGATGCTCCGGGAGCTGCCCACCAGATGGAAGTCGGGGTCACACCGGAAATCCACCCGGGCTCCGTCCAGAGCTGGGAGATCCCCACCCGTCAGGAAAACCTTCCCATTTTCCAGGGTCAAATAAGACTTGGAGCAGATTCGGACTGTGGAGAGACA--GGAAAAT-AAGAAGAGAGGCAAGTTGGAGAAGGCTCTTTCCCTTTAAAGAGCAGGGGACTGAGGTGTGGGTTTGGGTCCACAAGCATCCTGTGCTAAAGAAAATCACACGTGGAAAGGATTTGCCTACCTATCTTCCAATCCT
i aotNan1.NW_018509740v1   I 1 C 0
s micMur3.chr6               109834 452 + 123392446 TCCAAGG---CCATCCCCC--ACT-TTTATAGctcccaatcctttcccaccacccattccca-cccactcccacCCTTGCACAAGCATCCTCATCAGCTGTGTGCGGGCGGCTG--CCCCTCACCCTGGCAGTGGGGCTTGGGGGCGCTCCACAGGCCCTGGCTACAGATGCTCCGGGCACTGCCCACCAGATGGAAGTCAGAGTCACACCGGAAATCCACCCGGGCTCCATCCAGTGCTGGGAGGTCCCCACCCGTCAGGAAAACCTTCCCATTTTCCAGGGTCAAGTAAGACTTGGAGCAGATTCGGACTGTGGAAAGACA--GGAC----AAGAAGAGAGGCGAGCTGGAGAAGGCTCCAGCTCCTCACAGAGCAAGGGGATCAAGTTTGGGCTTGGAGCCACAAGTATCCTGCTCTACAGAAAGTCATGTGTAAAAAGGATTTGCCTCCCTACCTTCCA-TCTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     604424 452 +    730504 TCCAAGG---CCATCCCCC--ATT-TTTATAGCATCCAATCCTTTCCCACCATCCATTCCCACCCCACTCCCATCCTTGCACAAGCG---TCATCAGCTGTGTGCAGGCGGCTGTTCCCCTCACCCTGGCAGTGGGGCTTGGGGGTGCTCCACTGGCCCTGACTACAGATGCTCCGGGTGCTGCCCACCAGATGGAAGTCAGGGTCACACCGGAAATCCACCCGGGCTCCGTCCAGAGCTGGGAGGTCCCCACCCGTCAGGAAAACCTTCCCATTTTCCAGGGTCAAGTAAGACTTGGAGCAGATTCGGACTGTGGAAAGACA--GGAC----AAGAAGAGAGGCGAGTTGGAGAAGGCTCCTTCTCCTCACAGAGCAAAGGGATCAAGTTTGGGTTTAGAGCCACAAGCATCCTGCTCTACAGAAAATCATGTGTAAAAAGGATTTGCCTCCCTATCTTCCA-TCCT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           118483 461 +  18854210 TTCAAGGTTCCCCCCCCCC--ATT-TTTATAGcaccccatcctttcccaccatccctttccatcccactcccatccTCACACAAGCATCCTCATCAGCTGCATGCAGGCAGCTGTTCCCCTCACCCTGGCAGTGGGGCTTGGGGGTGCTCCACTGGCCCTGACTACAGATGCTCCGGGAGCTGCCCACCAGATGGAAGTCGGGGTCACACCGGAAATCCACCCGGGCTCCGTCCAGAGCTGGGAGGTCCCCACCCGTCAGGAAAACCTTCCCATTTTCCAGGGTCAAATAAGACTTGGAGCAGATTCGGACTGTGGAAAGACA--GGACAAT-AAGAAGAGAGGCGAGTTGGAGAAGGCACCTTCTCCTTACAGAGCAAGGGGATCAAG-CTGGGTTTGGATCCATAAGCATCCTGCTCTACAGAAAATCATGTGTAAAAAGGATTTGTCTCCCTACCTTCCACTCCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57938545 460 -  94987271 CCCAAAC---TCCTCCCCGACATTCTTCATAGCAACC-ATCCATTCCCTCTACCCACTCCCACCCCACTCCCATTCTAGGGCAGGCACCCTCATCAGCTGCAGGCAGGCAGCTGTTCCCCTCACCCTGGCAGTGGGGCTTGGGGGTGCTCCACTGGCCCTGACTACAGATGCTCCGGGAGCTGCCCACCAGATGGAAGTCGGGGTCACATCGGAAATCCACCCGGGCTCCATCCAGAGCTGGGAGGTCCCCACCCGTCAGGAAAACCTTCCCATTTTCCAGGGTCAAATAAGACTTGGAGCAGATTCGGACTGTGGAGAGACA--GGAAAAT-AAGAAAAAAGGCAAGTTGTAGAGGATCCTTCCCCTAGGGAGTACAGAGAATT-AGGTTTGGGTCTGGGTTCACAAGCATCCTGCTCCACAGGAAATCAGGTGTGCAATGTCTGTGCCTCCCTACCTCCCCGTTCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26235924 456 +  26524999 -CCCAGA---CCCCCCCCA--TCT-TGCATAGCACCCCATCCTTTCCCGCCATCCCTTCCCACCCT-CTGGCACCCTC-TGCAAGCATCC---TCAGTTGCAAGTAGGCAGCCATTCCCCTCACCCTGGCAGTGGGGCTTGGGAGTGCTCCACTGGCCCTGACTACAGATACTCCGGGAGCTGCCCACAAGATGGAAGTCAGGGTCACACCGGAAATCCACCCGGGCTCCATCCAGAGCGGGGAGGTCCCCACCCGTCAGGAAGACCTTCCCATTTTCCAGGGCCAAATATGACTTGGAACAGATTCGGACTGTGGAGAGAGATTGAAAAGTGAAAAGGAGAAGCACGTTGGGAAAGGCTCCTTCCCCTTAAAGAGCAGGGGCTGCAGACTGGGTTTGGGGGCCGCAAGCATACTACTCTGCAGGAAATCAGGGGTGCAAAGGATTTGCTTCTGCAGCTTCCATTCCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            46593 409 +    102524 --CCAGG---CCCACCCCCGCCCC----------------------------------CTGGCCCCAGCCCC-TGCTCCTCTGAGC-----CGCGGGGCGCCTGCAGGCCGCTG--GCCCTCACCCTGGCAGTGAGGCTTGGGGCTGCTCCACTGGCCCTGACCACAGACGCTCCGGGCACTGCCCACCAGATGGAAGTCGGGGTCACATCGGAAATCCACCCGGGCTCCGTCCAGAGCTGGGAGGTCCCCCCCGGTCAGGAAAACCTTCCCGTTTTCCAGGGTCAGATAAGACTTGGAGCAGATCCGGACTGTGGAGAGACA--GGGA-AT-AAAAAGAGAGGCGAGGTGGAGAAGGCGCCTTCCCCTGAGGGAGGGGCGGAGCCTGG-------TTGGGGTCCCACACAGCCCACTGTGCAGGAGAGCAGGTGCGCAAAGGGCCTGCCC-TCTAGCTTCCACTCTT
i dasNov3.JH582591         C 0 I 1810
e nomLeu3.chr1a            74603722 725 + 122973662 M

a score=4361008.000000
s hg38.chr6_GL000254v2_alt   896192 317 +   4827813 CCC--------TTACCTGTGCAAGCATCCACACATTCCC--------AAAAG------AAAAAAAAAATTACCATTTTAGGAACCCAAGATGGGGCTAT--AAGCACACAAAATGGGATCTCTTCAAAGTCAGC----TACAGTGGGCGGTTCtctggctttgaaatatgtagatgtatataactttggatgcacaatcagatttgcttttcttattatagttggcttctattaatattaaactggcttttgtttcttgggc--atatggtctctgggttggtgacagaggtattcaaaaatgtgatgaaatcattttagaattttttt-gtcatcatctgccactaa
s panTro5.chr6             29858967 317 + 175400573 CCC--------TTACCTCTGCAAGCATCCACACATTCCC--------AAAAG------AAAAAAAAAATTACCATTGTAGGAACCCAAGATGGGGCTAT--AAGCACACAAAATGGGATCTCTTCAAAGTCAGC----TACAGTGGGCGGTTCtctggctttgaaatatgtagatgtatataactttggatgcacaatcagatttgcttttcttattatagttggcttctattaatattaaactggcttttgtttcttgggc--atatggtctctgggttggtgacagaggtattcaaaaatgtgatgaaatcattttagaattttttt-gtcatcatctgccactaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30093331 316 + 173848474 CCC--------TTACCTCTGCAAGCATCCACACATTCCC--------AAAAG-------AAAAAAAAATTACCATTGTAGGAACCCAAGATGGGGCTAT--AAGCACACAAAATGGGATCTCTTCAAAGTCAGC----TACAGTGGGCGGTTCtctggctttgaaatatgtagatgtatataactttggatgcacaatcagatttgcttttcttattatagttggcttctattaatattaaactggcttttgtttcttgggc--atatggtctctgggttggtgacagaagtattcaaaaatgtgatgaaatcattttagaattttttt-gtcatcatctgccactaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5899953 316 +   6154872 CCT--------TTACCTCTGCAA-CATCCACACATTCCC--------AAAAG------AAAAAAAAAATTACCATTGTAGGAACCCAAGATGGGGCTAT--AAGCACACAAAATGGGATCTCTTCAAAGTCAGC----TACAGTGGGCGGTTCtctggctttgaaatatgtagatgtatataactttggatgcacaatcagatttgcttttcttattatagttggcttctattaatattaaactggcttttgtttcttgggc--atatggtctctgggttggtgacagaggtattcaaaaatgtgatgaaatcattttagaattttttt-gtcatcatctgccactaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30089527 314 + 172585720 CCC--------TTACCTCTGCAAGCGTCCACACATTCCC--------GAAAG----AAAAAAAAAAAATTATCATTGTAGGAACCCAAGATGGGGCTAT--AAGCACACAAAATGGGATCTCTTCAAAGTCAGC----TACAGTGGGCGGTTCTCTGGCTTTGAAATATGTAGATGTATATAACTTTGGATGCACAATCAGC-----TTTTCTTATTATAGTTGGCTTCTATTAATATTAAACTGGCTTTTGTTTCTTGGGC--ATATGGTCTCTGGGTTGGTGACAGAGGTATTCAAAAATGTGATGAAATCATTTTAGAATTTTTTT-GTCATCATCTGCCACTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29753235 314 - 170955103 CCC--------TTACCTCTGCAAGCATCCACACATTCCC--------GAAAG----AAAAAAAAAAAATTATCATTGTAGGAACCCAAGATGGGGCTAT--AAGCACACAAAATGGGATCTCTTCAAAGTCAGC----TACAGTGGGCGGTTCtctggctttgaaatatgtagatgtatataactttggatgcacaatcaga-----ttttcttattatagttggcttctattaatattaaactggcttttgtttcttgggc--atatggtctctgggttggtgacagaggtattcaaaaatgtgatgaaatcattttagaattttttt-gtcatcatctgccactaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2800735 317 -   2996164 CCC--------TTACCTCTGCAAGCATCCACACATTCCC--------Gaaag-aaaaaaaaaaaaaaaTTATCATTGTAGGAACCCAAGATGGGGCTAT--AAGCACACAAAATGGGATCTCTTCAAAGTCAGC----TACAGTGGGCGGTTCtctggctttgaaatatgtagatgtatataactttggatgcacaatcaga-----ttttcttattatagttggcttctattaatattaaactggcttttgtttcttgggc--atatggtctctgggttggtgacagaggtattcaaaaatgtgatgaaatcattttagaattttttt-gtcatcatctgccactaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     551838 315 +    766320 CCC--------TTACCTCTGCAAGCATCCACAGATTCCC--------GAAAG---AAAAAAAAAAAAATTATCATTGTAGGAACCCAAGATGGGGCTAT--AAGCACACAAAATGGGATCTCTTCAAAGTCAGC----TACAGTGGGCGGTTCtctggctttcaaatatgtagatgtatataactttggatgcacaatcaga-----ttttcttattatagttggcttctattaatattaaactggcttttgtttcttgggc--atatggtctctgggttggtgacagaggtattcaaaaatgtgatgaaatcattttagaattttttt-gtcatcatctgccactaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29007913 314 -  71996105 CCC--------TTACCTCTGCAAGCATCCACACATTCCC--------GAAAG--AAAAAAAAAAAAAA-TACCATTGTAGGAACCCAAGATGGGGCTAT--AAGCACACAAAATGGGATCTCTTCAAAGTCAGC----TACAGTGGGCGGTTCTCTGGCTTTGAAATATGTAGATGTATATAACTTTGGATGCACAATCAGA-----TTTTCTTATTATAGTTGGCTTCTATTAATATTAAACTGGCTTTTGTTTATTGGGC--ATATGGTCTCTGGGTTGGTGACAGAGGTATTCAAAAATGTGATGAAATCATTTTAGAATTTTTTT-GTCAT-ATCTGCCATTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     184104 316 +    290775 CCC--------TTACCTCTGCAAGCATCCACAGATTCCC--------GAAAG--AAAAAAAAAAAAAATTATCATTGTAGGAACCCAAGATGGGGCTAT--AAGCACACAAAATGGGATCTCTTCAAAGTCAGC----TACAGTGGGCGGTTCtctggctttcaaatatgtagatgtatataactttggatgcacaatcaga-----ttttcttattatagttggcttctattaatattaaactggcttttgtttcttgggc--atatggtctctgggttggtgacagaggtattcaaaaatgtgatgaaatcattttagaattttttt-gtcatcatctgccactaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2642827 314 -   3067355 CCC--------TTACCTCTGCAAGCATCCACACATTCCC--------GAAAG-----AAAAAAAAAAATTACCATTGTAGGAACCCAAGATGGGGCTAT--AAGCACACAAAATGGGATCTCTTCAAAGTCAGC----TACAGTGGGCGGTTCtctggctttgaaatatgtagatgtatataactttggatgcacaatcaga-----ttttcttattatagttggcttctattaatattaaactggcttttatttcttgggc--atatggtctctgggttggtgacagaggtattcaaaaatgtgatgaaatcattttagaatttttttggtcatcatctgccactaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       4409 317 +    132061 CCC--------TTACCTCTGCAAGCATCCACACATTCCC--------GAAAG------AAAAAAAAAATTACCATTGTAGAAACCCAAGATGGGGCTAT--AAGCACACAAAATGGGATCTCTTCAAAGTCAGC----TACAGTGGGC-GTTCTCTGGCTTTGAAATATGTAGATGTATATAACTTTGGATGCACAATCAGATTTGCTTTTCTTATTATAGTTGGCTTCTATTAATATTAAACTGGTTTTTGTTTCTTGGGCATATATGATCGCTGAGTTGGTGACAGAGGTATTCAAAAATGTGATGAAATCATTTTAGAAATTTTT--GTCATCATCTGCCACTAT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           231624 320 -    242197 CCC--------TTATCTCTGCAAGCATCCACACATTCCC--------GAAAG--GAAAAAAAAAAAAATTACCATTGTAGGAACCCAAGATGGGGCTAT--AAGCACACAAAATGGGATCTCTTCAAAGTCAGC----TACAGTGGGCGGTTCtctggctttgaaatatgtagatgtatataactttggatgcacaatcagatttgcttttcttattatagttggcttctattaatattaaactggtttttgtttcttgggc--atatggtcgctgggttgctgacagaggtatgcaaaaatgtgatgaaatcattttagaatttttt--gtcatcatctgccgctaa
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     225288 315 -   1771730 CCC--------TTACCTCTGCAAGCATCCACACATTCCC--------GAAAG-------GAAGAATAATTACCATTGTAGGATCCCAAGATGGGGCTAT--AAGCACACAAAATGGGATCTCTTCAAAGTCAGC----TACAGTGGGCGGTTCtctggctttgaaatatgtagatgtagataactttggatgcacaatcagatttgcttttcttattatagttggcttctattaatattaaactggtttttgtttcttgggc--atatggttgctgggttggtgacagaggtattcaaaaatgtgatgaaatcattttagaatttttt--gtcatcatctgccgctaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     307282 315 -    457564 CCC--------TTACCTCTGCAAGCATCCACACATTCCC--------GAAAG----GAAAAAAAATTATTACCATTGTAGGAACCCAAGATGGGGCTAT--AAGCACACAAAATGGGATCTCTTCAAAGTCAGC----TACAGTGGGTGGTTCtctggctttgaaatatgtagatgtatataactttggatgcacaatcagatttgcttttcttattatagttggcttctattaatattaaactggtttttgtttcttgggc--atatggtcgctgggttggtgacagaggtattcaaaaatgtgatgaaatcattttagaatttttt--g---tcatctgccactaa
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               110286 306 + 123392446 CCC--------TTTACTCTGAAAGCATCCACACATTCCC--------AAAAG--------AAAAAACATTTCCATTGTAGGAACCCAAGATGGGGCTATAAAAGCACACAAAATGGGATCTCTTCAAAGTCAGC----TACAGTGGGTGACTCTCTGGCTTTGAAATGTGTAGATGTATATAACTTTGGATAGACAATCAGACCTGCTTTTCTTATTATAGTTGGCTTATATTAATATAAAACTGGCTTTTGTTT------------CTCTTTCTGGGATGGAGACAGAGGTATTCAAAAATGTGATGAAATCGTTTTAGAATTTTTT--GGCATAATCTACCACTGA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     604876 304 +    730504 CCC--------TTTACTCTGAAAGCATCCACACATTCCC--------AAAAG--------AAAAAACATTTCCATTGCAGGAACCCAAGATGGGGCTAT--AAGCACACAAAATGGGATCTCTTCAAAGTCAGC----TACAGTAGGTGGCTTTCTGGCTTTGAAATGTGTAGATGTATATAACTTTGGATAGACAATCAGACTTGCTTTTCTTATTATAGTTGGCTTATATTAATATTGAACTGGCTTTTGTTT------------CTGTCTCTGGGTTGCAGACAGAGGTATTCAAAAATGTGATGAAATCATTTTAGAATTTTTT--GGCATAATCTACCACTAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           118944 321 +  18854210 CCC--------TTATCTCTGCAAGCATCCACACATTCCCAAAAGAAAAAAAG--------AAAAAACATTTCCATGGTAGGAACCCAAGATGGGGCTAT--AAGCACACAAAATGGGATCTCTTCAAAGTCAGC----TACAGTGGCCGGTTCtctggctttgaaacgtgtagatgtatataactttgtaggcacaatcagatttgcttttcttattatatttggcttatattaatattaaactggttttatttc-ttgggc--atactgtctctgggttagagacagaagtattcaaaaacataatgaaataattttagaatttttt--gacataatctgccattaa
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57939005 314 -  94987271 CCCCAGCCCTACCCCCCCCCCCAGTATTCAC--ATTCCT--------ATCAG-AAAAAAAAAATAGCATTTCTATTGTAGGAACTCAAGATGGAGCTAT--AAGCACACAAAACAGATACTGCTCAA---CAGCACAGTAAAGTGGGTACTCTTCTGCCTTTGAAATGTGTGGATGGACGTAAACCTGGATGCAAGACCAGATTTGCTTTTCTTATTATGGCTGGTCTATACTACTACTAAACTGGCTT---------------ATATGGTCATTGAGTGGGAGACAAAGGTGTCAGAAAATGTAATGAAATCGTCTTATAACTTAA---AAAATAATCTCTCATTAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26236380 322 +  26524999 CCC--------TTAACCCTCTAAGCATTCACACATTCCT--------AGCAGAAGAAAGGAAAAAGCATTTCCATGGTAGGAACCCAAGATGGAGCCAT-AAAGCACATAGGAGGGGGTCTCTTCAAAGTCCGT----GGCAGTGGACCGCTCCCTGGCTTCCAGACATGCAAAGGTGTATAACTGTAGACCCACAATCAGACTGACTTTTCTTATTATAGCTGACTTACACTACTGTTCAACTGGGTTTTGCTTCAGGAGT--ATATGATCTCTGCATTGGAGACAGAGGCAATCACAAGTGCCATGAAATCATTTT-GAGTGTTTT--TGCACAATCTGGCATTAA
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            47002 1810 +    102524 I
e nomLeu3.chr1a            74603722 725 + 122973662 M

a score=8223839.000000
s hg38.chr6_GL000254v2_alt   896509 491 +   4827813 tga-------tcctcaaagagaataactgacaagatgaattatcaaTGT--TA--TAGGCCAAT--GATCAGTGGCCTAATGAAGGGAGGATGAAATGAACTGTGCAGGCTGCTAGCTCTACTACCTCC----AACCGCACAGAGCAAAA---TTGCTCTTATGTAGTAGTCATTCAATAAATGTATTTGTGAATTTTGGTATACTGGATTTAAAGTGCTGAC-TTGC-AAGCAGTAATGCTAAGTTTGCGGCAGGAAAAGGAATAGTCTTGAAGAGGG-------------GAGGGGCTT-CCGAGGCTACTCACCACAGCGGCTGGGTGTGTCCATATCTGTCCAGGAGCCGTTGGCCAGGCACTTGCGGACCTTGGGCCCCACCACCTCGCGCTCCCCCCGGCACACATACTCAATCTCATAGTCCACTGGCAGGAAGTTGATAGCCTTCACCTGGTCCCGAGTCAGGCCCCGGTACCTGATGCCCCCTTCCCAGGGCGGGTGTATGATCTGGCAACCTAAGGG
s panTro5.chr6             29859284 491 + 175400573 tga-------tcctcaaagagaataactgacaagatgaattatcaaTGT--TA--TAGGCCAAT--GATCAGTGGCCTAATGAAGGGAGGATGAAATGAACTGTGCAGGCTGCTAGCTCTACTACCTCC----AACCGCACAGAGCAAAA---TTGCTCTTATGTAGTAGTCATTCAATAAATGTATTTGTGAATTTTGGTATACTGTATTTAAAGTGCTGAC-TTGC-AAGCAGTAATGCTAAGTTTGCCGCAGGAAAAGGAATAGTCTTGAAGAGGG-------------GAGGGGCTT-CCGAGGCTACTCACCACAGCGGCTGGGTGTGTCCATATCTGTCCAGGAGCCGTTGGCCAGGCACTTGCGGACCTTGGGCCCCACCACCTCGCGCTCCCCCCGGCACACATACTCAATCTCATAGTCCACTGGCAGGAAGTTGATAGCCTTCACCTGGTCCCGAGTCAGGCCCCGGTACCTGATGCCCCCTTCCCAGGGCGGGTGTATGATCTGGCAACCTAAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30093647 491 + 173848474 tga-------tcctcaaagagaataactgacaagatgaattatcaaTGT--TA--TAGGCCAAT--GATCAGTGGCCTAATGAAGGGAGGATGAAATGAACTGTGCAGGCTGCTAGCTCTACTACCTCC----AACCGCACAGAGCAAAA---TTGCTCTTATGTAGTAGTCATTCAATAAATGTATTTGTGAATTTTGGTATACTGTATTTAAAGTGCTGAC-TTGC-AAGCAGTAATGCTAAGTTTGCCGCAGGAAAAGGAATAGTCTTGAAGAGGG-------------GAGGGGCTT-CCGAGGCTACTCACCACAGCGGCTGGGTGTGTCCATATCTGTCCAGGAGCCGTTGGCCAGGCACTTGCGGACCTTGGGCCCCACCACCTCGCGCTCCCCCCGGCACACATACTCAATCTCATAGTCCACTGGCAGGAAGTTGATAGCCTTCACCTGGTCCCGAGTCAGGCCCCGGTACCTGATGCCCCCTTCCCAGGGCGGGTGTATGATCTGGCAACCTAAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5900269 491 +   6154872 tga-------tcctcaaagagaataactgacaagatgaattatcaaTGT--TA--TAGGCCAAT--GATCAGTGGCCTAATGAAGGGAGGATGAAATGAACTGTGCAGGCTGCTAGCTCTACTACCTCC----AACCGCACAGAGCAAAA---TTGCTCTTATGTAGTAGTCATTCAATAAATGTATTTGTGAATTTTGGTATACTGGATTTAAAGTGCTGAC-TTGC-AAGCAGTAATGCTAAGTTTGCGGCAGGAAAAGGAATAGTCTTGAAGAGGG-------------GAGGGGCTT-CCGAGGCTACTCACCACAGCGGCTGGGTGTGTCCATATCTGTCCAGGAGCCGTTGGCCAGGCACTTGCGGACCTTGGGCCCCACCACCTCGCGCTCCCCCCGGCACACATACTCAATCTCATAGTCCACTGGCAGGAAGTTGATAGCCTTCACCTGGTCCCGAGTCAGGCCCCGGTACCTGATGCCCCCTTCCCAGGGCGGGTGTATGATCTGGCAACCTAAGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74604447 491 + 122973662 TGA-------TCCTCAAAGAGAATAACTCACAAGATGAATTATCAATGT--TA--CAGGCCAAT--GATCAGTGGCCTAATGAAGGGAGGATGCAATGAACTGTGCAGGCTGCTAGCTCTACTACCTCC----AACCGCACAGAGCAAAA---TTGCTCTTATGTAGTAGTCATTCAATAAATGTATTTGTGAATTTTGGTATACTGGATTTAAAGTGCTGAC-TTGC-AGGCAGTAATGCTAAGTTTGAGGCAGGAAAAGGAATAGTCTTGAAGAGGG-------------GAGGGGCTT-CCGAGGCTACTCACCACAGCGGCTGGGTGTGTCCATATCTGTCCAGGAGCCGTTGGCCAGGCACTTGCGGACCTTGGGCCCCACCACCTCGCGCTCCCCCCGGCACACATACTCAATCTCATAGTCCACTGGCAGGAAGTTGATAGCCTTCACCTGGTCCCGAGTCAGGCCCCGGTACCTGATGCCCCCTTCCCAGGGCGGGTGTATGATCTGGCAACCTAAGGG
i nomLeu3.chr1a            M 725 C 0
s rheMac8.chr4             30089841 490 + 172585720 TGA-------TCCTCAAAGAGAATAATTCACAAGATGAATTATCAATGT--TA--TAGGCCAAT--GATCAGTGGCCTAATGAAGGGAGGATGAAATGAACTGTGCAGGCTGCTAGCTCTACTACCTCC----AACCGCACAG-GCAAAA---CTGCTCTTATGTAGTAGTCTTTCAATAAATGTATTTGTGGATTTTGGTATACTGGATTTAAAGTGCTGAC-TTGC-AAGCAGTAATGGTAAGTTTGCGGCAGGAAAAGGAATGGTCTTGAAGAGGG-------------GAGGGGCTT-CCGAGGCTACTCACCACAGCGGCTGGGTGTGTCCATATCTGTCCAGGAGCCGTTGGCCAGGCACTTGCGGACCTTGGGCCCCACCACCTCGCGCTCCCCCCGGCACACATACTCAATCTCATAGTCCACCGGCAGGAAGTTGATAGCCTTCACCTGGTCCCGAGTCAGGCCCCGGTACCTGATGCCCCCTTCCCAGGGCGGGTGTATGATCTGGCAACCTAAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29753549 490 - 170955103 tga-------tcctcaaagagaataattcacaagatgaattatcaaTGT--TA--TAGGCCAAT--GATCAGTGGCCTAATGAAGGGAGGATGAAATGAACTGTGCAGGCTGCTAGCTCTACTACCTCC----AACCGCACAG-GCAAAA---CTGCTCTTATGTAGTAGTCTTTCAATAAATGTATTTGTGAATTTTGGTATACTGGATTTAAAGTGCTGAC-TTGC-AAGCAGTAATGGTAAGTTTGCGGCAGGAAAAGGAATGGTCTTGAAGAGGG-------------GAGGGGCTT-CCGAGGCTACTCACCACAGCGGCTGGGTGTGTCCATATCTGTCCAGGAGCCGTTGGCCAGGCACTTGCGGACCTTGGGCCCCACCACCTCGCGCTCCCCCCGGCACACATACTCAATCTCATAGTCCACCGGCAGGAAGTTGATAGCCTTCACCTGGTCCCGAGTCAGGCCCCGGTACCTGATGCCCCCTTCCCAGGGCGGGTGTATGATCTGGCAACCTAAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2801052 490 -   2996164 tga-------tcctcaaagagaataattcacaagatgaattatcaaTGT--TA--TAGGCCAAT--GATCAGTGGCCTAATGAAGGGAGGATGAAATGAACTGTGCAGGCTGCTAGCTCTACTACCTCC----AACCGCACAG-GCAAAA---CTGCTCTTATGTAGTAGTCTTTCAATAAATGTATTTGTGAATTTTGGTATACTGGATTTAAAGTGCTGAC-TTGC-AAGCAGTAATGGTAAGTTTGCGGCAGGAAAAGGAATGGTCTTGAAGAGGG-------------GAGGGGCTT-CCGAGGCTACTCACCACAGCGGCTGGGTGTGTCCATATCTGTCCAGGAGCCGTTGGCCAGGCACTTGCGGACCTTGGGCCCCACCACCTCGCGCTCCCCCCGGCACACATACTCAATCTCATAGTCCACCGGCAGGAAGTTGATAGCCTTCACCTGGTCCCGAGTCAGGCCCCGGTACCTGATGCCCCCTTCCCAGGGCGGGTGTATGATCTGGCAACCTAAGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     552153 490 +    766320 tga-------tcctcaaagagaataattcacaagatgaattatcaaTGT--TA--TAGGCCAAT--GATCAGTGGCCTAATGAAGGGAGGATGAAATGAACTGTGCAGGCTGCTAGCTCTACTACCTCC----AACCGCACAG-GCAAAA---CCGCTCTTATGTAGTAGTCTTTCAATAAATGTATTTGTGAATTTTGGTATACTGGATTTAAAGTGCTGAC-TTGC-AAGCAGTAATGGTAAGTTTGCGGCAGGAAAAGGAATGGTCTTGAAGAGGG-------------GAGGGGCTT-CCGAGGCTACTCACCACAGCGGCTGGGTGTGTCCATATCTGTCCAGGAGCCGTTGGCCAGGCACTTGCGGACCTTGGGCCCCACCACCTCGCGCTCCCCCCGGCACACATACTCAATCTCATAGTCCACCGGCAGGAAGTTGATAGCCTTCACCTGGTCCCGAGTCAGGCCCCGGTACCTGATGCCCCCTTCCCAGGGCGGGTGTATGATCTGGCAACCTAAGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29008227 490 -  71996105 TGA-------TCCTCAAAGAGAATAATTCACAAGATGAATTATCAATGT--TA--CAGGCCAAT--GATCAGTGGCCTAATGAAGGGAGGACGAAATGAACTGTGCAGGCTGCTAGCTCTACTACCTCC----AACCGCACAG-GCAAAA---CCCCTCTTATGTAGTAGTCTTTCAATAAATGTATTTGTGAATTTTGGTATACTGGATTTAAAGTGCTGAC-TTGC-AAGCAGTAATGGTAAGTTTGCGGCAGGAAAAGGAATGGTCTTGAAGAGGG-------------GAGGGGCTT-CCGAGGCTACTCACCACAGCGGCTGGGTGTGTCCATATCTGTCCAGGAGCCGTTGGCCAGGCACTTGCGGACCTTGGGCCCCACCACCTCGCGCTCCCCCCGGCACACATACTCAATCTCATAGTCCACCGGCAGGAAGTTGATAGCCTTCACCTGGTCCCGAGTCAGGCCCCGGTACCTGATGCCCCCTTCCCAGGGCGGGTGTATGATCTGGCAACCTAAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     184420 490 +    290775 tga-------tcctcaaagagaataattcacaagatgaattatcaaTGT--TA--TAGGCCAAT--GATCAGTGGCCTAATGAAGGGAGGATGAAATGAACTGTGCAGGCTGCTAGCTCTACTACCTCC----AACCGCACAG-GCAAAA---CCGCTCTTATGTAGTAGTCTTTCAATAAATGTATTTGTGAATTTTGGTATACTGGATTTAAAGTGCTGAC-TTGC-AAGCAGTAATGGTAAGTTTGCGGCAGGAAAAGGAATGGTCTTGAAGAGGG-------------GAGGGGCTT-CCGAGGCTACTCACCACAGCGGCTGGGTGTGTCCATATCTGTCCAGGAGCCGTTGGCCAGGCACTTGCGGACCTTGGGCCCCACCACCTCGCGCTCCCCCCGGCACACATACTCAATCTCATAGTCCACCGGCAGGAAGTTGATAGCCTTCACCTGGTCCCGAGTCAGGCCCCGGTACCTGATGCCCCCTTCCCAGGGCGGGTGTATGATCTGGCAACCTAAGGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2643141 491 -   3067355 tga-------tcctcaaagagaataattcacaagatgaattatcaaTGT--TA--TAGGCCCAT--GATCAGTGGCCTAATGAAGGGAGGATGAAATGAACTGTGCAGGCTGCTAGCTCTACTACCTCC----AACCGCACAGAGCAAAA---CCGCTCTTATGTAGTAGTCTTTCAATAAATGTATTTGTGAATTTTGGTATACTGGATTTAAAGTGCTGAC-TTGC-AAGCAGTAATGCTAAGTTTGCGGCAGGAAAAGGAATGGTCTTGAAGAGGG-------------GAGGGGCTT-CCGAGGCTACTCACCACAGCGGCTGGGTGTGTCCATATCTGTCCAGGAGCCGTTGGCCAGGCACTTGCGGACCTTGGGCCCTACCACCTCGCGCTCCCCCCGGCACACATACTCAATCTCATAGTCCACCGGCAGGAAGTTGATAGCTTTCACCTGGTCCCGAGTCAGGCCCCGGTACCTGATGCCCCCTTCCCAGGGCGGGTGTATGATCTGGCAACCTAAGGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       4726 493 +    132061 TGA-------CCCTCACCGAGAATAACTCACAAGATGAATTATCAATGTTATA--TAGGCCAAT--GATCAGTGGCCTAATGAAGGGAGGATGAAATGAACTGTGCAGGCTGCCAGCTATACTCCCTCC----AACAGCACACAGCAAAA---TTGCTCTGATGTAGTAGTCATTCAATAAATGTATTTGTGAATTTTGATATACTGGATTTAAAGTGCTGAC-TCCC-AAACAGTAATGCTAACTTTGAGGCAGGAAAAGGAAGGCTCTTGAAGAGGG-------------AAGGGGCTT-CTGAGGCTACTCACCACAGCGGCTGGGTGTGTCCATATCTGTCCAGGAGCCGTTGGCCAGGCACTTGCGGACCTTGGGCCCCACCACCTCGCGCTCCCCCCGGCACACATACTCAATCTCATAGTCCACCGGCAGGAAGTTGATAGCCTTCACCTGGTCCCGAGTCAGGCCCCGGTACCTGATGCCCCCTTCCCAGGGCGGGTGTATGATCTGGCAACCTAAGGG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           231944 491 -    242197 tga-------tcctcactgagaataactcacaagatgaattatcgaTGT--TA--TAGGCCAAT--GATCAGTGGCCTAATGGAGGGAGGATGAAATGAACTGGGCAGGCTGCCAGCTATACTACCTCC----AACAGCACACAGCAAAA---TTGCTCTGATGTAGTAGTCATTCAATAAATGTATTTGTGAATTTTGGTATACCGGATTTAAAGTGCTGAC-TTGC-AAGCAGTAATGCTAACTTTGAGGCAGGAAAAGGAATGGTCTTGAAGAGGG-------------AAGGGGCTT-CTGAGGCTACTCACCACAGCGGCTGGGTGTGTCCATATCTGTCCAGGAGCCGTTGGCCAGGCACTTGCGGACCTTGGGCCCCACCACCTCGCGCTCCCCCCGGCACACATACTCAATCTCATAGTCCACCGGCAGGAAGTTGATAGCCTTCACCTGGTCCCGAGTCAGGCCCCGATACCTGATGCCCCCTTCCCAGGGCGGGTGTATGATCTGGCAACCTAAGGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     225603 491 -   1771730 tga-------tcctcaccgagaataactcacaagatgaattatcaaTGT--TA--TAGGCCAAT--GATCAGTGGCCTAACGAAGGGAGGATGAAATGAACGGGGCAAGCTGCCAGCTATACCacctcc----aacagcacacaacaaaa---ttgctctgatgtagtagtcattcaataaatgtatttgtgaatttTGGTATACTGGATTTAAAGTGCTGAC-TTGC-AAACAGTAATGCTAACTTTGAGGCAGGAAAAGGAATGGTCTTGAAGAGGG-------------AAGGGGCTT-CTGAGGCTACTCACCACAGCGGCTGGGTGTGTCCATATCTGTCCAGGAGCCGTTGGCCAGGCACTTGCGGACCTTGGGCCCCACCACCTCGCGCTCCCCCCGGCACACATACTCAATCTCATAGTCCACCGGCAGGAAGTTGATAGCCTTCACCTGGTCCCGAGTCAGGCCCCGGTACCTGATGCCCCCTTCCCAGGGCGGGTGTATGATCTGGCAACCTAAGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     307597 491 -    457564 tga-------tcttcaccgagaataactcacaagatgaattatcaaTGT--TA--TAGGCCAAT--GATCAGTGGCCTAATGAAGGGAGGATGAAATGAACTGTGCAGGCTTCCAGCAATACtacctcc----aacagcacacagcaaaa---ttgctctgatgtagtagtcattcaataaatgtatttgtgaatttTGGTATACTGGATTTAAAGTGCTGAC-TTGC-AAGCAGTAATGCTAACTTTGAGGCAGGAAAAGGAATGGTCTTGAAGAGGG-------------AAGGGGCTT-CTGAGGCTACTCACCACAGCGGCTAGGTGTGTCCATATCTGTCCAGGAGCCGTTGGCCAGGCACTTGCGGACCTTGGGCCCCACCACCTCGCGCTCCCCCCGGCACACATACTCAATCTCGTAGTCCACCGGCAGGAAGTTGATAGCCTTCACCTGGTCCCGAGTCAGGCCCCGGTACCTGATGCCCCCTTCCCAGGGCGGGTGTATAATCTGGCAACCTAAGGG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               110592 482 + 123392446 TTATGTACTGTACTCAAAGAGAACAGCTCACATGATGAATAAGCAAAGT--TATTTTGTCCAGT--GATCAGTGGCCTAATGAAATG----------------TGCAGGCTGCTAGCTCTGTCACCTCC-----ACTGCACACCGCCAAA---TCC--CTCACATAGTAGTTATTCAACAAATGTATTGGTGAATTTGGTCGCACTGGATTTAAAGTGCTGACTTTGC-AAGCAGCGATGCCAAGTTCGAGGCAGGATAAGGAATGGTC-TGCGGAGGG-------------GCGGGGCTTCCCGAGGCTACTCACCACAGCGGCTGGGTGTGTCCATATCTGTCCAGGAGCCGTTGGCCAGGCACTTTCGGACCTTGGGCCCCACCACCTCGCGCTCCCCCCGGCACACATACTCAATCTCATAGTCCACGGGCAGGAAGTTGATAGCCTTCACCTGGTCCCGAGTCAGGCCCCGGTACCTGATGCCCCCTTCCCAGGGCGGGTGTATGATCTGGCAACCTGAGGG
i micMur3.chr6             C 0 I 56
s proCoq1.NW_012152574v1     605180 478 +    730504 TGA-------GCCTCAAAGAGAACAGCTCACATGATGAATAATCAAAGT--TATTTTGTCCAGT--GATCAGTGGCCTAAGGAAATG----------------TGCAGGCTGCTAGctctatcacctcc-----actgcacacagccaaa---tccctctcacatagtagtcactcaacaaatgtatttgtgaatttggtCCCACTGGGTTTAGAGTGCTGACTTTGC-AAGCAGTGATGCTAAGTTTGAGGCAGGAAAAGGAACGGTCTTGCGGAGGG-------------GAGGGGCTTCCCCAGGCTACTCACCACAGCGGCTGGGTGTGTCCATATCTGTCCAGGAGCCGTTGGCCAGGCACTTTCGGACCTTGGGCCCCACCACCTCGCGCTCCCCCCGGCACACATACTCAATCTCATAGTCCACAGGCAGGAAGTTGATAGCCTTCACCTGGTCCCGAGTCAGGCCCCGGTACCTGATGCCCCCTTCCCAGGGCGGGTGTATGATCTGGCAACCTGAGGG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           119265 494 +  18854210 tga-------tcctcaaagagaacagctcacaagatgaataatcaaagt--tATTTTATCCAAT--GATCAGTGGTCTAATGAAAGGAGGATAAAATGAAACATGCAGGCTGCTAGTTCCATTACCTCT----AACTGCACACA-CAAAA---TCCCTCTTATATAGTAGTCATTCAACAAATGTATTTGTGAATTTCATTACACTGGATTTAAAATGCTGACTTTGC-AAGCAGTAATGTTAAGTTTGAGGCAAGAAAAGGAATGGTCCTGAGAAGGG-------------GAGGGGCTTCCCGAGGTTACTCACCACAGCGGCTGGGCGTGTCCATATCTGTCCAGGAGCCGTTGGCCAGGCACTTGCGGACCTTGGGCCCCACCACCTCTCGCTCCCCCCGGCACACATACTCAATCTCATAGTCCACAGGCAGGAAGTTGATAGCCTTCACCTGGTCCCGAGTCAGGCCCCGGTATCTGATGCCCCCTTCCCAGGGCGGGTGTATGATCTGGCAACCTGAGGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57939319 506 -  94987271 TGA-------ACCTCAA--AGGATAACTCA---GATGAAAAATCAAAGT--TATTTCACCCAAT--GATCAGTATCCTCATGAA--GACGATGAAGTGAA-TGTGCTGGCTGCTTAGCTTGCTTCCTCCCACTAGCTGCTCACAGCAACACCCCTCCTCCTACATAGTACTCATTCATTAAACGTATTTGTGAATTTGGTTCCACTGGATTTAAATTGCTGAC-TTGCAAAACAACTAAGGATGGTCTGCAACTGAGAATGGAAGGGCCTGAAGGAAGGGGGCAGGGATGGTGGGTGGCTT-CCCAGGCTACTCACCACAGCGACTGGGTGTGTCCATATCCGTCCAGGAGCCGTTGGCCAGGCACTTGCGCACCTTGGGCCCCACCACCTCGCGTTCGCCCCGGCACACATATTCAATCTCATAGTCCACAGGCAGGAAATTGATGGCCTTCACCTGGTCGCGAGTCAAGCCACGGTACCTGATGCCACCTTCCCAGGGCGGATGTATAATCTGGCAACCTGAGAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26236702 472 +  26524999 TAA-------TCC-CAAAGAGAAGAACTCACAAGATGAATAATCAA-GT--TA--TTTTATGATAAGGTCAGTGGCCTCATGCAGGGAGGATGAGATGAAAGGTGTGGGCCGCTAACTTTACTGCCTCC----AAGTGCACATAGTAAAG---TCCCTCTTACATAGTGTTAGCTCGAGAATCATATTTGTGAATTTTGTTCCAGTGGATTTAAAGTGCTGAC-TTGT-A---AGTAATGCTAAGTTTGAGGCAGAAGGAGGGATGGTCT-----------------------------TT-GCAAGGCTACTCACCACAGCGGCTGGGTGTGTCCATATCTGTCCAGGAGCCATTGGCCAGGCACTTTCGGACCTTGGGCCCCACCACCTCTCGCTCTCCCCGGCACACATACTCAATCTCATAGTCCACCGGCAGGAAGTTGATAGCCTTCACCTGGTCACGAGTCAGGCCCCTGTACCTGATACCCCCTTCCCAAGGCGGGTGTATGATCTGGCAACCTAAGGG
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            47002 1810 +    102524 I

a score=794192.000000
s hg38.chr6_GL000254v2_alt   897000 70 +   4827813 GTGAGTCGGGGAGGCATACAGAGAGGAATGGTGGGAAAGAGGAAAAGGCAGGCTCCCCAGTGGGAGGAAG
s panTro5.chr6             29859775 70 + 175400573 GTGAGTCGGGGAGGCATACAGAGAGGAATGGTGGGAAAGAGGAAAAGGCAGGCTCCCCAGTGGGAGGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30094138 70 + 173848474 GTGAGTCGGGGAGGCATACAGAGAGGAATGGTGGGAAAGAGGAAAAGGCAGGCTCCCCAGTGGGAGGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5900760 70 +   6154872 GTGAGTCGGGGAGGCATACAGAGAGGAATGGTGGGAAAGAGGAAAAGGCAGGCTCCCCAGTGGGAGGAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74604938 70 + 122973662 GTGAGTCGGGGAGGCATACAGAGAGGAATGGTGGGAAAGAGGAAAAGGCAGGCTCCCCAGTGGGAGGCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30090331 69 + 172585720 GTGAGTGGGGA-GGCATACAGAGAGGAATGGTGGGAAAGAGGAAAAGGCAGGCTCCCCAATGGGAGGCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29754039 69 - 170955103 GTGAGTGGGGG-GGCATACAGAGAGGAATGGTGGGAAAGAGGAAAAGGCAGGCTCCCCAATGGGAGGCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2801542 70 -   2996164 GTGAGTGGGGGAGGCATACAGAGAGGAATGGTGGGAAAGTGGAAAAGGCAGGCTCCCCAATGGGAGGCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     552643 70 +    766320 GTGAGTGGGGGAGGCATACAGAGAGGAATGGTGGGAAAGAGGAAAAGGCAGGCTCCCCAATGGGAGGCAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29008717 70 -  71996105 GTGAGTGGGGGAGGCATACAGAGAGGAATGGTGGGAAAGAGGAAAAGGCAGGCTCCCCAATGGGAGGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     184910 70 +    290775 GTGAGTGGGGGAGGCATACAGAGAGGAATGGTGGGAAAGAGGAAAAGGCAGGCTCCCCAATGGGAAGCAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2643632 70 -   3067355 GTGAGTGAGGGAGGCATACAGAGAGGAATGGTGGGAAAGAGGAAAAGGCAGGCTCCCCAATGGGAGGCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       5219 70 +    132061 GTGAGTGGCGGAGGCATACAGAGAGCAATGGTGGGAAAGAAGAAGAGGCAGACTCCCCAGTGGGAGGCAG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           232435 69 -    242197 GTGAGTGGCGGAGGCATATAGAGAGCAATGGTGGGAAAGAAGAAAAGGTAGGCTCCCCAGTGGGA-GCAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     226094 70 -   1771730 GTGAGTGGCGGAGGCATACAGAGAGCAATGGTGGGAAAGAAGAAAAGGCAGGCTCCCCAGTGGGAGGCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     308088 70 -    457564 GTGAGTGGCGGAGGCATACAGAGAGCAATGGTGGGAAAGAAGAAAAGGTAGGCTCCCCAGTGGGAGGCAG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     605658 66 +    730504 GGGGGCGG-GGAGGCAGACTCAGAGGAATGGTGGGAAAGAGGAAAA---AGACTAGGCAGCGGGAGGCAG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           119759 66 +  18854210 GTGAGCAG-GGAGGAAGACACAGGGGGATGGTGGAAAAGAGGCAAA---AGAATCCGCGGTGGTAGTGTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57939825 57 -  94987271 --GGAATGGGGAGGCAC----AGGGGAACCGTGGGAGCGGG---AAGGCAG--CGCGCAGTGGAAGGG--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26237174 39 +  26524999 GTGAGTCGGCTGGGT---CAGAGAGGAGTAGCGGGGGCGCAG----------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               111074 56 + 123392446 I
e dasNov3.JH582591            47002 1810 +    102524 I

a score=2666696.000000
s hg38.chr6_GL000254v2_alt   897070 189 +   4827813 GGGAGAGTAGGGCGTGGTCTGTGGGCAGGCT-------GGGGACAGAGGAAGAGGG----ATGGGGC-----ACTAGAGGGTGGGAGTGGGGACAGGTACAGAT--------CCCCTGGCTAAAGGACA--GAGAGTAAAGGGCC-AGGGTTAAAGCTGATGAGAGAACCCACAAGTGGGGAGG-GAAGGG---TGCTGGGTGGAGGTAAGAAAGAAAAG
s panTro5.chr6             29859845 189 + 175400573 GGGAGAGTAGGGCGTGGTCTGTGGGCAGGCT-------GGGGACAGAGGAAGAGGG----ATGGGGC-----ACTAGAGGGTGGGAGTGGGGACAGGTACAGAT--------CCCCTGGCTAAAGGACA--GAGAGTAAAGGGCC-AGGGTTAAAGCTGATGAGAGAACCCACAAGTGGGGAGG-GAAGGG---TGCTGGGTGGAGGTAAGAAAGAAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30094208 189 + 173848474 GGGAGAGTAGGGCGTGGTCTGTGGGCAGGCT-------GGGGACAGAGGAAGAGGG----ATGGGGC-----ACTAGAGGGTGGGAGTGGGGACAGGTACAGAT--------CCCCTGGCTAAAGGACA--GAGAGTAAAGGGCC-AGGGTTAAAGCTGATGAGAGAACCCACAAGTGGGGAGG-GAAGGG---TGCTGGGTGGAGGTAAGAAAGAAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5900830 188 +   6154872 GGGAGAGTAGGGCGTGGTCTGTGGGCAGGCT-------GGGGACAGAGGAAGACGG----ATGGGGC-----ACTAGAGGGTGGGAGTGGGGACAGGTACAGAT--------CCCCTGGCTAAAGGACA--GAGAGTAAAGGGCC-AGGGTTAAAGCTGATGAGAGAACCCACAAGTGGGGAGG-GAAGGG---TGCTGGGTGGAGGTAAG-AAGAAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74605008 192 + 122973662 GGGAGAGTAGGGCGTGGTCTGTGGGCAGGCT-------GGGGACAGAGGAAGAGGG----ATGGGGC-----ACTAGAGGGTGGGAGTGGGGACACGTACAGAT--------CCCCTAGCTAAAGGACA--GAGAGTAACGGGCC-AGGGTCAAAGCTGATGAGAGAACCCACAAGTGGGGAGG-AAAGGGTGCTGCTGGGTGGAGGTAAGAAAGAAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30090400 189 + 172585720 GGGAGGGTAGGGCGTGGTCTGTGGGCAAGCT-------GGGGACAGAGGAAGACGG----ATGGGGC-----ACTAGAGGGTGGGAGTGGGGACAGGTACAGAT--------CCCCTGGCTAAAGAACC--GAGAGTAAAGGGCC-AGGGTTAAAGCTGATGAGAGAACCCACAAGTGGGGAGG-GAAGGG---TGCTGGGTGGAGGTAAGGAAGAAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29754108 189 - 170955103 GGGAGGGTAGGGCGTGGTCTGTGGGCAAGCT-------GGGGACAGAGGAAGAGGG----ATGGGGC-----ACTAGAGGGTGGGAGTGGGGACAGGTACAGAT--------CCCCTGGCTAAAGGACC--GAGAGTAAAGGGCC-AGGGTTAAAGCTGATGAGAGAACCCACAAGTGGGGAGG-GAAGGG---TGCTGGGTGGAGGTAAGGAAGAAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2801612 189 -   2996164 GGGAGGGTAGGGCGTGGTCTGTGGGCAAGCT-------GGGGACAGAGGAAGAGGG----ATGGGGC-----ACTAGAGGGTGGGAGTGGGGACAGGTACAGAT--------CCCCTGGCTAAAGGACC--GAGAGTAAAGGGCC-AGGGTTAAAGCTGATGAGAGAACCCACAAGTGGGGAGG-GAAGGG---TGCTGGGTGGAGGTAAGGAAGAAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     552713 189 +    766320 GGGAGGGTAGGGCGTGGTCTGTGGGCACGTT-------GGGGACAGAGGAAGAGGG----ATGGGGC-----ACTAGAGGGTGGGAGTGGGGACAGGTACAGAT--------CCCCTGGCTAAAGGACC--GAGAGTAAAGGGCC-AGGGTTAAAGCTGATGAGAGAACCCACAAGTGGGGAGG-GAAGGG---TGCTGGGTGGAGGTAAGGAAGAAAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29008787 189 -  71996105 GGGAGGGTAGGGCGTGGTCTGTGGGCAGGCT-------GGGGACAGAGGAAGAGGG----ATGGGGC-----ACTAGAGGGTGGGAGTGGGGACAGGTACAGAT--------CCCCTGGCTAAAGGACC--GAGAGTAAAGGGCC-AGGGTTAAAGTTGACGAGAGAACCCACAAGTGGGGAGG-GAAGGG---TGCTGGGTGGAGGTAAGGAAGAAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     184980 189 +    290775 GGGAGGGTAGGGCGTGGTCTGTGGGCAGGTT-------GGGGACAGAGGAAGAGGG----ATGGGGC-----ACTAGAGGGTGGGAGTGGGGACAGGTACAGAT--------CCCCTGGCTAAAGGACC--GAGAGTAAAGGGCC-AGGGTTAAAGCTGATGAGAGAACCCACAAGTGGGGAGG-GAAGGG---TGCTGGGTGGAGGTAAGGAAGAAAAG
i manLeu1.NW_012099233v1   C 0 I 5941
s colAng1.NW_012115566v1    2643702 189 -   3067355 GGGAGGGTAGGGCGTGGTCTGTGGACAGGCT-------GGGGACAGAGGAAGAGGG----ATGGGGC-----ACTAGAGGGTGGGAGTGGGGACAGGTACAGAT--------CCCCTGGCTAAAGGACC--GAGAGTAAAGGGCC-AGGGTTAAAGCTGATGAGAGAACCCACAAGTGGGGAGG-GAAGGG---TGCTGGGTGGAGGTAAGGAAGAAAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       5289 187 +    132061 GGGAGAGTAGGGCGTGGTCTGTTGGCAGGCT-------GGGGACAGAGGAAGAGGA----ATGGGGC-----ACTAGAGGGTGGGAGT-GGGACAAGTACAGAG--------CCCGGGGCTAAATGACA--GAGAGTAAAGGTCC-CGGGTTAAAGCTGATTAGAGAACCCAC-GGTGGGGAGG-GAAGGA---TGCTAGGCGGAGGTAAGAAAGAAAAG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           232504 189 -    242197 GGGAGAGTAGGGCGTGGTCTGTCGGCAGGCT-------GGGGACAGAGGAAGAGGG----ATGGGGC-----ACTAGAGGGTGGGAGTGGGGACACGTACAGAG--------CGCGGGGCTAAAGGACA--GAGAGTAAAGGTCC-AGGGTTAAAGGTGATGAGAGAACCCACAAGTGGGGAGG-GAAGGG---TGCTGGGTGGAGGTAAGGAAGAAAAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     226164 189 -   1771730 GGGAGAGTAGGGCGTGGTCTGTGGGCAGGCT-------GGGGACAGAGGAAGAGGA----ATGGGGC-----ACCAGAGGGTAGGAGTGGGGACAGGTACAGAG--------CCCGGGGCTAAAGGACA--GAGAGTAAAGGTCC-AGGGTTAAAGCTGATGAGAGAACCCACAAGTGGGGAGG-GAAGGG---TGCTAGGTGGAGGTAAGGAAGAAAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     308158 190 -    457564 GGGAGAGTAGGGCGTGGTCTGTGGGCAGGCA-------GAGGACAGAGGAAGAGGG----ATGGGGC-----ACTAGAGGGTGGGAGTGGGGACAGGTACAGAG--------CCTGGGGCTAAAGGACA--GAGAGTAAAGGTCC-AGGGTTAAAGCTGATGAGAGAACCCACAAGTGGGGAGGAAAAAGG---TGCTGGGTGGAGGTAAGGAAGAAAAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               111130 185 + 123392446 GGGCGAGCAGGGCGTGGTCCGTGGGCAGGCT--------GGGACAG---ACAAGGG----ATGGG-T-----GCTAGCGGGTTGAAGTGGGGACAGGTACAGAA--------CCTTGGGCTAGCGGCCAGGGAGAGTAAAGGGCC-AGGGCTAAAGCCGATGACGGAACCCACGAGTGTGGAGA-GAAGGG---CGCTGGTCAG-AGTAATGAAGAAAAG
i micMur3.chr6             I 56 C 0
s proCoq1.NW_012152574v1     605724 180 +    730504 GGGAGAGCAGGGCGTGGTCCGTGGGCAGGCT-------GGGGACAG---AGAAGGG----ATGGG-T-----ACTAGCGGGTGGGAGTGGGGACAGGTACAGAA--------CCTGAGGCTAAAGGCCAAAGAGAGTAG-------AGGGATAAAGCTGATGACAGAACCCACAAGTGCGGAGG-GAAGAG---TGCTGGTCGG-GGTAATGAAGAAAAG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           119825 165 +  18854210 GAGAGAATAGGGCGTGGTCAATGGGCAGGCT-------GGGGAGAGAGAAGAAGGG----ATGGGCC-----GCTAGCCAGTGGAAATGGGGACAGGTACAGAA--------CCTTGAGCTAAAGGACA--GAGAGTAAGGGGCC-AGGGCTAAA----------GAACTCACAAGTGGGGAGG-GAAGGG---TGC--------------AAAGAAAAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57939882 187 -  94987271 GGAAGAGCAGGGCGTGGTCAATGGTGGGGTTGGGGCAGGGGGACAGAAAAGGAGGGGCACACGGGACACACGACTGGAAGCTGGGAGTGGGAACAGTTA-AGAA--------CCCCAAGCTGCAGAACC--CAGCGTCGTGGGTT-AGGGCTAAAGCTGGTGCGAGAGTCCACCGGTTAAGAAG----------TA-----------TAATGGAGACAAA
i mm10.chr17               C 0 I 3
s canFam3.chr35            26237213 180 +  26524999 AGGAGCCCAGGGCGTAGTCAGTGGGCAGGTG-------GCGAA-----------GG----AT----------GCTAGGAGGTGGGTGTAGTGATGGGTACAGAAACACTCTCCCCGCCCCCAAAGGACA--AAAAGGCCTCAGCCAAGGGTTAGGACTGGTAAGACAGCTCACTAGTGAGGAGG-GAAGGG---CGCTGATCC--CCTAACGGGGAAAGC
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            47002 1810 +    102524 I

a score=2107595.000000
s hg38.chr6_GL000254v2_alt   897259 184 +   4827813 TAATTAAGAAATCATGAAGGGTATGATATGTGGGTGGAGCTTTTCTT---T------AAAAA--AAAG--GCTAAATGAGGATATTCGAGTTGAATTAGGATAGGAGGAT-------AAAGGGAGGCTAATAAGATCATCTGGACAGCAAAGTGGGACCAAGAAAAGGGAGTAATTGAGGTAGTAAT----GTGGGGCTGGGAAAGGG
s panTro5.chr6             29860034 186 + 175400573 TAATTAAGAAATCATGAAGGGTATGATATGTGGGTGGAGCTTTTCTT---T--AAAAAAAAA--AAAG--GCTAAATGAGGATATTAGAGTTGAATTAGGATAGGAGGAT---------AGGGAGGCTAATAAGATCATCTGGACAGCAAAGTGGGACCAAGAAAAGGGAGTAATTGAGGTAGTAAT----GTGGGGCTGGGAAAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30094397 183 + 173848474 TAATTAAGAAATCATGAAGGGTATGATATGTGGGTGGAGCTTTTCTT---T-----TAAAAA--AAAG--GCTAAATGAGGATATTAGAGTTGAATTAGGATAGGAGGAT---------AGGGAGGCTAATAAGATCATCTGGACAGCAAAGTGGGACCAAGAAAAGGGAGTAATTGAGGTAGTAAT----GTGGGGCTGGGAAAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5901018 188 +   6154872 TAATTAAGAAATCATGAAGGGTATGATATGTGGGTGGAGCTTTTCTT---T--AAAAAAAAA--AAAG--GCTAAATGAGGATATTAGAGTTGAATTAGGATAGGAGGAT-------AAAGGGAGGCTAATAAGATCATCTGGACAGCAAAGTGGGACCAAGAAAAGGGAGTAATTGAGGTAGTAAT----GTGGGGCTGGGAAAGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74605200 185 + 122973662 TAATTAAGAAATCATGAAGGGTATGATATGTGGGTGGAGCTTTTCTT---T-----AAAAAA--AAAG--GCTAAATGAGGATATTAGAGTTGAATTAGGATAGGAGGAT-------AAAGGGAGGCTTATAAGATCATCTGGACAGCAAAGTGGGACCAAGAAAAGGGAGTAATTGAGGTAGTAAT----GTGGGGCTGGGAAAGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30090589 186 + 172585720 ---TAAAGAAATCATGAAGGGTATGATATGTGGGTGGAGCTTTTATT---T--TAAAAAAAAATAAAG--GCTAAATGAGGATATTTGAGTTGAATTAGGATGGGAGGAT-------AAAGGGGGCCTTATAAGATCATCTGGACAGCAAAGTGGGACCAAGAAAAGGGAGTAGTTGAGGTAGTAAT----GAGGGGCTGGGAAAG-G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29754297 186 - 170955103 ---TAAAGAAATCATGAAGGGTATGATATGTGGGTGGAGCTTTTATT---T--AAAAAAAAAATAAAG--GCTAAATGAGGATATTTGAGTTGAATTAGGACGGGAGGAT-------AAAGGGGGCCTTATAAGATCATCTGGACAGCAAAGTGGGACCAAGAAAAGGGAGTAGTTGAGGTAGTAAT----GAGGGGCTGGGAAGG-G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2801801 187 -   2996164 ---TAAAGAAATCATGAAGGGTATGATATGTGGGTGGAGCTTTTATT---TAAAAAAAAAAAATAAAG--GCTAAATGAGGATATTTGAGTTGAATTAGGACAGGAGGAT-------AAAGGGGGCCTTATAAGAT-ATCTGGACAGCAAAGTGGGACCAAGAAAAGGGAGTAGTTGAGGTAGTAAT----GAGGGGCTGGGAAAG-G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     552902 184 +    766320 ---TAAAGAAATCATGAAGGGTATGATATGTGGGTGGAGCTTTTATT---T--AAAAAAAAA--AAAG--GCTAAATGAGGATATTTGAGTTGAATTAGGACAGGAGGAT-------AAAGGGGGCCTTATAAGATCATCTGGACAGCAAAGTGGGACCAAGAAAAGGGAGTAGTTGAGGTAGTAAT----GAGGGGCTGGGAAAG-G
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29008976 185 -  71996105 ---TAAAGAAATCATGAAGGGTATGATATGTGGGTGGAGCTTTTATT---T--AAAAAAAAA-TAAAG--GCTAAATGAGGATATTTGAGTTGAATTAGGACGGGAGGAT-------AAAGGGGGCCTTATAAGATCATCTGGACAGCAAAGTGGGACCAAGAAAAGGGAATAGTTGAGGTAGTAAT----GAGGGGCTGGGAAAG-G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     191110 184 +    290775 ---TAAAGAAATCATGAAGGGTATGATATGTGGGTGGAGCTTTTATT---T--AAAAAAAAG--AAAG--GCTAAATGAGGATATTTGAATTGAATTAGGACAGGAGGAT-------AAAGGGGGCCTTATAAGATCATCTGGACAGCAAAGTGGGACCAAGAAAAGGGAGTAGTTGAGGTAGTAAT----GAGGGGCTGGGAAAG-G
i manLeu1.NW_012099233v1   I 5941 C 0
s colAng1.NW_012115566v1    2643891 184 -   3067355 ---TAAAGAAATCATGAAGGGTATGATATGTGGGTGGAGCTTTTATT---T--AAAAAAAAA--AAAG--GCTAAATGAGGATATTTGAGTTGAATTAGGACAGGAGGAT-------AAAGGGGGCCTTATAAGATCATCTGGACAGCAAAGTGGGACCAAGAAAAGGGAGTAATTGAGGTAGTAAT----GAGGGGCTCGGAAAG-G
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       5476 183 +    132061 TAATTAAGAAATTATGAAGGAT---TTATGTGGGTGGAGC-TTTCTT---A--AAAAAACAA--AAAA--GCTAAATGAGGATATTTGAGTTGAATTAGGATGAGAAGAT--------AAGGGGGCCTTGCAAGACCATCTCGACAATAAAATGAGACCAAGAAAAGGGAGGAATTGAGGTAGTAAT----GTGGGGCCGGGAAAGAG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           232693 186 -    242197 TAATTAAGAAATTATGAAGGGT---TTATGTAGGTGGAGC-TTTCTTAAAA--AAAAAACAA--AAAA--GCTAAATGAGGATATTTGAGTTGAATTAGGATGAGAGGAT--------AAGGGGGCCTTGTAAGACCATCTGGACAATAAAATGAGACCAAGAAAAGGGAGGAACTGAGGTAGTAAC----GTGGGGCCGGGAAAGAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     226353 183 -   1771730 TAATTAAGAAATTATGAAGGGT---TTATGTGGGTGGAGA-TTTCTT---A--AAAAAACAA--AAAA--GCTAAATGAGGATATTTGAGTTGAATTAGGATGAGAGGAT--------AAGGGGGCCTTGTAAGACCATCTGGACAATAAAATGAGAACAAGACAAGGGAGGAATTGAGGTAGTAAT----GTGGGGCCAGGAAAGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     308348 183 -    457564 TAATTAAGAAATTATGAAGGGT---ATATGTGGGTGGAGC-TTTCTT---A--AAAAAACCA--AAAA--GCTAAATGAGGATATTTGAGTTGAATTAGGATGAGAGGAT--------AAGGGGGCCTTGTAAGACCATCTGGACAATAAAATAAGACCAAGAAAAGGGAGGAACTGAGGTAGTAAC----GTGGGGCCGGGAAAGAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               111315 177 + 123392446 TAATTAAGCAATTGTGAAGGGTATAATATGTCGGTGGAGC-TTGGTT--CC-------AAAA--AGGG--GCTAAATGA-AATATTTGAGTTCAATTAGGATAAGAA-----------GGGGGGGCCTTATAAGACCACCTGGACAACAAAGCGGGACCAGGGAAAGGGAGGAATTGAGGTTGT-AT----GTGGGGCCAGGAGAGGG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     605904 177 +    730504 TAATTAAGAAATTGTGAAGGGTATAATATGTGGGTGAAGC-TTGGTT---C-------AAAA--AGGG--GCTAAATGA-GATATTTGAGTTCAATCAGGATGAGAA-----------GCGGGGGCCTTACAAGACCATCTGGACAACAAAGCGGGACCAAGGAAAGGGAGGAATTGAGGTAGTAAT----GTGGGGCCAGGAAAGGG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           119990 176 +  18854210 TAATCAAAAAATTGTGACGAGTATAATATGTGGGCGGAGC-TTGGTC---C-------AAAA--GGGGGTGCTAAATGAGGATACTTGAGTTGAATCAGGATGTG-------------GGGAGAGCTTT--AAGATCATCCGCACAACAAAGTGGGACCAAGAAAAGGGAGGAATTGCGGTAGTAAC----GTGGAACCAGGAAAGGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57940072 175 -  94987271 CTAAGAAGAAATCCTAAGGGCTATAATGTTCGG--------TGGTTT---A--AATGAGGGA--CAGG--GCCGAAGGAGAATACCGG-------TGAGGACCACACAAACCCACTGAACAAGGACCACACAAACCCATCAAAGCAACAAGGTG-GACTACGGAAGGGGGGCGCT----GTAGTAAC----GTGGGGCCCGGAAAGGG
i mm10.chr17               I 3 C 0
s canFam3.chr35            26237393 158 +  26524999 ----TAAGAATCGGGAAAAGCTACAATGTGCCAGTGGGCC---CGGT---C---------AA--ACAG--GCTAAAGGAGGAT-TTTGAG-TGCTTTAGGGTGAGAGTAC-----------------------AGCCACCCAGGCAGCGTAATGTG--CAGGAACGGAGGGTTGCGGGTGTCGAAACAATGGAGGGACACGGAAAGAG
i canFam3.chr35            C 0 I 3512
e dasNov3.JH582591            47002 1810 +    102524 I

a score=6857556.000000
s hg38.chr6_GL000254v2_alt   897443 475 +   4827813 GATTGAGGCGGAGAAAAT------GCACAGGAAGGTGGT------ATAGTGTAGCAATGTG-GGCAGAGAAAAGAGGTGCTGGATAGTAACGTGGGGTGACAG-AAGGAGGTCAGCAGTAGTAAAGTCGGGCCGAGCAGAAGGGGTTGCCA--GACCGGGATGATATGTGGGACTGATGGGATAGTGATGAGGACCAGAAATGAGGAGATGCAGGGAAA-GGGAAGTGGAGCGAAGGAGGGCCGGAGGTCGTCGAAGAAGGATGCACCTTCTGAGGTGGCGTTGGGGGTCTGCGCCCCGCCCGCGCCCGGGGGGCGGAGGAAGAGTGGCGC------CAGT------AGCAGCAGCAGCAACATCTAAGTGAGAGGCGGCCATGAGGACTGGACCGAGCCC--CGCCGGC-GCGGCCCGCACCCGGAGACTACTCGACCTCTTGCCGGTTGCCTCGCAGGCTCCGACCGGGCTCAGCCTGGGGACCAAGAGAGCGCCCCGCGGAGGA
s panTro5.chr6             29860220 475 + 175400573 GATTGAGGCAGAGAAAAT------GCACAGAAAGGTGGT------ATAGTGTAGCAATGTG-GGCAGAGAAAAGAGGTGCTGGATAGTAACGTGGGGTGACAG-AAGGAGGTCAGCAGTAGTAAAGTCGGGCCGAGCAGAAGGGGTTGCCA--GACCGGGATGATATGTGGGACTGATGGGATAGTGATGAGGACCAGAAATGAGGAGATGCAGGGAAA-GGGAAGTGGGGCGAAGGAGGGCCCGAGGTCGTCGAAGAAGGATGCACCTTCTGAGGTGGCGTTGGGGGTCTGCGCCCCGCCCGCGCCCGGGGGGCGGAGGAAGAGTGGCGC------CAGT------AGCAGCAGCAGCAACATCTAAGTGAGAGGCGGCCATGAGGACTGGACCGAGCCC--CGCCGGC-GCGGCCCGCACCCGGAGACTACTCGACCTCTTGCCGGTTGCCTCGCAGGCTCCGACCGGGCTCAGCCTGGGGACCAAGAGAGCGCCCCGCGGAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30094580 475 + 173848474 GATTGAGGCGGAGAAAAT------GCACAGAAAGGTGGT------ATAGTGTAGCAATGTG-GGCAGAGAAAAGAGGTGCTGGATAGTAACGTGGGGTGACAG-AAGGAGGTCAGCAGTAGTAAAGTCGGGCCGAGCAGAAGGGGTTGCCA--GACCGGGATGATATGTGGGACTGATGGGATAGTGATGAGGACCAGAAATGAGGAGATGCAGGGAAA-GGGAAGTGGGGCGAAGGAGGGCCCGAGGTCGTCGAAGAAGGATGCACCTTCTGAGGTGGCGTTGGGGGTCTGCGCCCCGCCCGCGCCCGGGGGGCGGAGGAAGAGTGGCGC------CAGT------AGCAGCAGCAGCAACATCTAAGTGAGAGGCGGCCATGAGGACTGGACCGAGCCC--CGCCGGC-GCGGCCCGCACCCGGAGACTACTCGACCTCTTGCCGGTTGCCTCGCAGGCTCCGACCGGGCTCAGCCTGGGGACCAAGAGAGCGCCCCGCGGAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5901206 475 +   6154872 GATTGAGGCGGAGAAAAT------GCACAGAAAGGTGGT------ATAGTGTAGCAATGTG-GGCAGAGAAAAGAGGTGCTGGATAGTAACGTGGGGTGACAG-AAGGAGGTCAGCAGTAGTAAAGTCGGGCCGAGCAGAAGGGGTTGCCA--GACCGGGATGATATGTGGGACTGATGGGATAGTGATGAGGACCAGAAATGAGGAGATGCAGGGAAA-GGGAAGTGGGGCGAAGGAGGGCCCGAGGTCGTCGAAGAAGGATGCACCTTCTGAGGTGGCGTTGGGGGTCTGCGCCCCGCCCGCGCCCGGGGGGCGGAGGAAGAGTGGCGC------CAGT------AGCAGCAGCAGCAACATCTAAGTGAGAGGCGGCCATGAGGACTGGACCGAGCCC--CGCCGGC-GCGGCCCGCACCCGGAGACTACTCGACCTCTTGCCGGTTGCCTCGCAGGCTCCGACCGGGCTCAGCCTGGGGACCAAGAGAGCGCCCCGCGGAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74605385 478 + 122973662 GATTGAGGCGGAGAAAAT---AACGCACAGAAAGGTGGT------ATAGTGTAGCAATGTG-GGCAGAGAAAAGAGGTGCTGGATAGTAACGTGGGGTGACAG-AAGGAGGTCAGCAGTAGTAAAGCGGGGCCGAGCAGAAGGGGTTGCCA--GACCGGGATGATATGTGGGACTGATGGGATCGTGATGAGGACCAGAAATGAGGAGATGCAGGGAAA-GGGAAGTAGGGCGAAGGAGGGCCCGAGGTCGTCGAAGAAGGATGCACCTTCTGAGGTGGCGTTGGGGGTCTGCGCCCCGCCCGCGCCCGGGGGGCGGAGGAAGAGTGGCGC------cagt------agcagcagcagcagcaTCTAAGTGAGAGGCGGCCATGAGGACTGGACCGAGCCC--CGCCGGC-GCGGCCCGCACCCGGAGACTACTCGACCTCTTGCCGGTTGCCTCGCAGGCTCCGACCGGGCTCAGCCTGGGGACCAAGAGAGCGCCCCGCGGAGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30090775 481 + 172585720 GATTGAGACGGAGAAAAT---AATGCATAAAAAGGTGGT------ATAGTGTAGTAATGCG-GGCAGAGAAAAGGGGTGCTGGATAGTAACGTGGGGTGACAG-AAAGAGGTCAGCAGTAGTAAAGTGGAGCCGAGCAGAAGGGGTTGCCA--GACCGGAATGATATGTGAGACTGACGGGATCGTGATGAGGACCAGAAATGAGGAGATGCAGGGAAA-GGGAAGTGGGGCGAAGGAGGGCCCGAGGTCGTCGAAGAAGGATGCACCTTCCGAGGTGGCGTTGGGGGTCTGCGCCCCGCCCGCGCCCGGGGGGCGGAGGAAGAGTGGCGC------cagt---agcagcagcagcagcagcaTCTAAGTGAGAGGCGGCCATGAGGACCGGACCGAGCCC--CGCCGGC-GCGGCCCGTACTCGGAGACTACTCGACCTCTTGCCGGTTGCCTCGCAGGCTCCGACTGGGCTCAGCCCAGGGACCAAGAGAGCGCCCCGCGGAGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29754483 481 - 170955103 GACTGAGGCGGAGAAAAT---AATGCATAAAAAGGTGGT------ATAGTGTAGTAATGCG-GGCAGAGAAAAGGGGTGCTGGATAGTAACGTGGGGTGACAG-AAAGAGGTCAGCAGTAGTAAAGTGGAGCCGAGCAGAAGGGGTTGCCA--GACCGGAATGATATGTGAGACTGACGGGATCGTGATGAGGACCAGAAATGAGGAGATGCAGGGAAA-GGGAAGTGGGGCGAAGGAGGGCCCGAGGTCGTCGAAGAAGGATGCACCTTCCGAGGTGGCGTTGGGGGTCTGCGCCCCGCCCGCGCCCGGGGGGCGGAGGAAGAGTGGCGC------cagt---agcagcagcagcagcagcaTCTAAGTGAGAGGCGGCCATGAGGACCGGACCGAGCCC--CGCCGGC-GCGGCCCGTACTCGGAGACTACTCGACCTCTTGCCGGTTGCCTCGCAGGCTCCGACTGGGCTCAGCCCAGGGACCAAGAGAGCGCCCCGCGGAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2801988 484 -   2996164 GATTGAGGCGGAGAAAAT---AATGCATAAAAAGGTGGT------ATAGTGTAGTAATGCG-GGCAGAGAAAAGGGGTGCTGGATAGTAACGTGGGGTGACAG-AAAGAGGTCAGCAGTAGTAAAGTGGAGCCGAGCAGAAGGGGTTGCCA--GACCGGAATGATATGTGAGACTGACGGGATCGTGATGAGGACCAGAAATGAGGAGATGCAGGGAAA-GGGAAGTGGGGCGAAGGAGGGCCCGAGGTCGTCGAAGAAGGATGCACCTTCCGAGGTGGCGTTGGGGGTCTGCGCCCCGCCTGCGCCCGGGGGGCGGAGGAAGAGTGGCGC------cagtagcagcagcagcagcagcagcaTCTAAGTGAGAGGCGGCCATGAGGACCGGACCGAGCCC--CGCCGGC-GCGGCCCGTACTCGGAGACTACTCGACCTCTTGCCGGTTGCCTCGCAGGCTCCGACTGGGCTCAGCCCAGGGACCAAGAGAGCGCCCCGCGGAGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     553086 481 +    766320 GATTGAGGCGGAGAAAAT---AATGCATAAAAAGGTGGT------ATAGTGTAGTAATGTG-GGCAGAGAAAAGGGGTGCTGGATAGTAACGTGGGGTGACAG-AAAGAGGTCAGCAGTAGTAAAGTGGAGCCGAGCAGAAGGGGTTGCCA--GACCGGGATGATATGTGAGACTGACGGGATCGTGATGAGGACCAGAAATGAGGAGATGCAGGGAAA-GGGAAGTGGGGCGAAGGAGGGCCCGAGGTCGTCGAAGAAGGATGCACCTTCCGAGGTGGCGTTGGGGGTCTGCGCCCCGCCCGCGCCCAGGGGGCGGAGGAAGAGTGGCGC------cagt---agcagcagcagcagcggcaTCTAAGTGAGAGGCGGCCATGAGGACCGGACCGAGCCC--CGCCGGC-GCGGCCCGTACTCGGAGACTACTCGACCTCTTGCCGGTTGCCTCGCAGGCTCCGACTGGGCTCAGCCCAGGGACCAAGAGAGCGCCCCGCGGAGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29009161 481 -  71996105 GATTGAGGCGGAGAAAAT---AATGCATAAAAAGGTGGT------ATAGTGTAGTAATGTG-GGCAGAGAAAAGGGGTGCTGGATAGTAACGTGGGGTGACAG-AAAGAGGTCAGCAGTAGTAAAGTGGAGCCGAGCAGAAGGGGTTGCCA--GACCGGGATGATATGTGAGACTGACGGGATCGTGATGAGGACCAGAAATGAGGAGATGCAGGGAAA-GGGAAGTGGGGCGAAGGAGGGCCCGAGGTCGTCGAAGAAGGATGCACCTTCCGAGGTGGCGTTGGGGGTCTGCGCCCCGCCCGCGCCCGGGGGGCGGAGGAAGAGTGGAGC------cagt---agcagcagcagcagcagcaTCTAAGTGAGAGGCGGCCATGAGGACCGGACCGAGCCC--CGCCGGC-GCGGCCCGTACTCGGAGACTACTCGACCTCTTGCCGGTTGCCTCGCAGGCTCCGACTGGGCTCAGCCCGGGGACCAAGAGAGCGCCCCGCGGAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     191294 481 +    290775 GATTGAGGCGGAGAAAAT---AATGCATAAAAAGGTGGT------ATAGTGTAGTAATGTG-GGCAGAGAAAAGGGGTGCTGGATAGTAACGTGGGGTGACAG-AAAGAGGTCAGCAGTAGTAAAGTGGAGCCGAGCAGAAGGGGTTGCCA--GACCGGGATGATATGTGAGACTGACGGGATCGTGATGAGGACCAGAAATGAGGAGATGCAGGGAAA-GGGAAGTGGGGCGAAGGAGGGCCCGAGGTCGTCGAAGAAGGATGCACCTTCCGAGGTGGCGTTGGGGGTCTGCGCCCCGCCCGCGCCCGGGGGGCGGAGGAAGAGTGGCGC------cagt---agcagcagcagcagcggcaTCTAAGTGAGAGGCGGCCATGAGGACCGGACCGAGCCC--CGCCGGC-GCGGCCCGTACTCGGAGACTACTCGACCTCTTGCCGGTTGCCTCGCAGGCTCCGACTGGGCTCAGCCCAGGGACCAAGAGAGCGCCCCGCGGAGGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2644075 484 -   3067355 GATTGAGGCGGAGAAAAT---AATGCATAAAAAGGTGGT------ATAGTGTAGTAATGTG-GGCAGAGAAAAGGGGTGCTGGATAGTAACGTGGGGTGACAG-AAAGAGGTCAGCAGTAGTAAAGCGGAGCCGAGCATAAGGGGTTGCCA--GACCGGGATGATATGTGAGACTGATGGGATCGTGATGAGGACCAGAAATGAGGAGATGCAGGGAAA-GGGAAGTGGGGCGAAGGAGGGCCCGAGGTCGTCGAAGAAGGGTGCACCTTCCGAGGTGGCGTTGGGGGTCTGCGCCCCGCCCGCGCCCGGGGGGCGGAGGAAGAGTGGCGA------cagtaccagcagcagcagcagcagcaTCTAAGTGAGAGGCGGCCATGAGGACCGGACCGAGCCC--CGCCGGC-GCGGCCCGTACCCGGAGACTACTCGACCTCTTGCCGGTTGCCTCGCAGGCTCCGACTGGGCTCAGCCCGGGGACCAAGAGAGCGCCCCGCGGAGGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       5659 484 +    132061 GATTGAGGCTGAGAAAAT---AATACACAGAAAGGTTGT------AGAGTGTAGTAATGTG-GGCAGAGAAAAGGGGTGCTGGGTAGTAAAGTGGGGTGACAG-AAGGAGGTCAGCAGTAGTAAAGTGGGGCCGAGCAGAAGGGGTTGCCA--GACCCGGAAGCTATGTGGGACTGAAGGGATCATGATGAGGAGCAGAAACGAGGAGATGGAGGGAAA-GGGAAGTGGGGCGAAGGAGGGCCCGAGGTCGTCAAAGAAGGATGCACCTTCTGAGGTGGCGTTGGGGGTCTGCGCTCCGCCCGCGCCAGGGGGGCGAAGGAAGAGTGGCGC------cagtagcagcagcagcagcagcagcaTCTAAGTGAGAGGCCGCCATGAGGACCGGACAGAGCCC--CGCCGGC-GCAGCCCGTACCCGGAGGCTAACCGGCCTCAAGCCCGTTGCCTCGCAGACTCCGACAGGGCTCAGCCTGGGGACCAGATGAGCGCCCCGCGGAGGA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           232879 482 -    242197 GATTGAGGCTGAAAAAAT---AATGCACAGAAAGGTGGT------AGAGTGTAGTAATGTG-AGCAGAGAAAAGGGGTGCTGGGTAGTAACGTGGGGTGACAG-AAGGAGGTCAGCAGTAGTAAAGTGGGGCCGAGCAGAAGGGGTTGCCA--GACGGGGAAGCTATGTGGGACTGAAGGGGTCATGATGAGGACCAGAAACGAGGAGATGCAGGGAAA-GGGAAGTGGGGCGAAGGAGGGCCCGAGGTCGTCGAAGAAGGATGCACCTTCTGAAGTGGCGTTGGGGGTCTGCGCTCCGCCCGCGCCGTGGGGGCAGAGGAAGAGTGGCGC------cagt---agcagcagcagcagcagcaTCTAAGTGAAAGGCGGCCATGAGGACCGGACGGAGCCC--CGCCGGCGGGGGCCCGTACCCGGAGACTACCCGGCCTCAAGCCCGTTGCCTCGCAGGCTCCGACCGGGCTCAGCCTGGGGACTAGATGAGCGCCCCGCGGAGGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     226536 481 -   1771730 GATTGAGGCTGAGAAAAT---AATGCACAGAAAGGTGGT------AGAGTGTAGTAATGTG-GGCAGAGAAAAGGGGTGCTGGGTAGTAACGTGGGGTGACAG-AAGGAGGTCAGCAGTAGTAAAGTAGGGCCGAGCAGAAGGGGTTGCCA--GACCGGGAAGCTATGTGGGACTGAAGGGATCATGATGAGGACCAGAATCGAGGAGATGCAGGGAAA-GGGAAGTGGAGCAAAGGAGGGCCCGAGGTCGTCGAAGAAGGATGCACCTTCTGAGGTGGCGTTGGGGGTCTGCGCTCCGCCCGCGCCGGGGGGGCGGAGGAAGAGTGGCGC------cagt---agcagcagcagcagcagcaTCTAAGTGAGAGGCGGCCATGAGGACCGGACGGAGTCC--CGCCGGC-GCGGCCCGTACCCGGAGACTACCCGGCCTGAAGCCCGTTGCCTCGCAGGCTCCGACCGGGCTCAGCCTGGGGACCAGATGAGCGCCCCGCGGAGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     308531 483 -    457564 GATTGAGGCTGAGAAAAT---GATGCACAGAAAGGTGGT------AGAGTGTAGTAATGTG-GGCAGAGAAAAGGGGTGCTGGGTAGTAACGTGGGGTGACAG-AAGGAGGTCAGCAGTAGTAAAGTGGGGCCGAGCAGAAGGGGTTGCCA--GACCGGGGAGCTATGTGGGACTGAAGGGATCATGACGAGGACCAGAAATGAGGAGATGCAGGGAAA-GGGAAGTGGGGCGAAGGAGGGCCCGAGGTC-TCGAAGAAGGATGCACCTTCTGAGGTGGCGTTGGGGGTCTGCGCTCCGCCCGCGCCGGGGGGGCGGAGGAAGAGTGGCGC------cagtagcagcagcagcagcagcagcaTCTAAGTGAGAGGCGGCCATGAGGACCGGACGGAGCCC--CGCCGGC-GCGGCCCGTACCCGGAGACTAACCGGCCTCAAGCCCGTTGCCTCACAGGCTCCGACCGGGCTCAGCCTGGGGACCAGATGAGCGCCCCGCGGAGGA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               111492 459 + 123392446 GGTTG-GGCCGAGAAAAT---AATGCACGGAAAGGCAGT------GTAGCGT---AACGTG-GGCAGAGAAAGGGGGTTCTGGGTAGTAATGCAGGGCGACAG-AAGGAGGTCAGGA-TAATAAAGTGATGCCGAGCACA-GGGGTTGCCA--GACCCGGACGCCAAGTCGGGCTGACGAGATAGTGATGAGGACCAGAAAT---AAGACGCAGGGAGA-GG--------GTGGAGGAGGGCCCGAGGTCGCCGGAGAAGGG-GCACCTTCCGAAGTGGCGTTGGGGGCCTGCGCCCCGCCTGCGCCCGGGGGGCGGAGGAAGagcggcgc---------c---agcagcagcagcagcagcaTCTGAGTGAGAGGCGGCGGTGAGGACCCGAGCGCGCTC--CGTCGGC-GCGGCTC-GACCCGGAGGCGGCCCGGCCTCTCTCCAGTCGCCTCGCAGGCTGGGACCCGGCTCAGCCCGGGGGCCGTGAGAGCGCCCCGCGAAGGA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     606081 468 +    730504 GGTTG-GGCCGAGAAAAT---AATGCATGGAAAGGCGGT------GTAGCGT---AACGTG-GGCAGAGAAAAGGGGTTCTGGGTAGTAATGTGGGGTGACAG-AAGGAGGTCAGGAGTAGTAAAGTGGTGCCGAGCACAGGGGGTTGCCA--GACCCGGACGCCAAGTAGGGCTGACGAGATAGTGATGAGGACCAGAAAT---GAGATGCAGGGAGC-GG--------GTGGAGGAGGGCCCGAGGTCGCCGGAGAAGGGTGCACCTTCCGAAGTGGCGTTGGGGGCCTGCGCCCCGCCTGCGCCCGGGGGGCGGAGGAAGAGTGGCGC------cagc---agcagcagcagcagcagcaTCTGAGTGAGAGGCGGCGGTGAGGACCGGACCGAGCTCCTCGCAGGC-GCGGCCCGGACCGGGAGGCGGCCCGGCCTCCCTCCGGTCGCCTCGCAGGTTCGGACCCGGCTCAGCCAGGGTGCCGGGCGAGCGCCCCGCGGAGGA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           120166 475 +  18854210 GATTG-GACTGAGAAAAT---AATGCACAGAAAGGTTGCTTAGTATTAGTGT---AACATG-AGCAGAAAAAA-------TGGGTAGTAATGTGGGGTGACAG-AAGGAGGTCAGGAGTAGTAAAGTGAGGCCGAGCACAAGGGGTTCCCA--GACGCGGATGCCATGTAGGGCTGAGGAGATAGTGATGAGGACTACAAATGAGGAGATGCAGGGAGA-GG-------AGTGAAGGAGGGAGAAAAGTCGTCGGAGAAGGGTGCACCTTCTGAAGTGGCGTTGGGGGTCTGCGCCCCGCCCGCGCCCGGGAGGCGGAGGAAAAGTGGTGCcagcaacagc---agcggcagcagcagcagcaTCTGAGTGAGAGGCGGCAGTGAGGACCGGACTGAGCTC--CGCCGGC-GCGGCCCGGACTGGGAGGCGGCCCGGCCTCCCTCCTGTCGCCTCGCAGGCTCCGACCCAGCTGAGCTTGGGGACCGGGAGAGCGCCCAGCGGAGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57940247 467 -  94987271 AGGTGGGGCTGAGATAATTCGGGGTCACAGAAAAACGGT------GTAGTGTAGCAACGTGAGGTAGAGGAAATGGGTGCTGG-TGGTGATGCGGAGTGACAGAAAGGAGGTCAGGAGTTGTGAAGTGGCT----GCGGACCAGGATGCCAGGGATGGGGGCGGGGGGAGGTCCTGCCGCAAGAGTGATGAGGAAAGGAGACG------TGCAAGGAAACGAGCTGTGGGGTGGAAGAGGTCC--AGGGCGCCGGAGATGGGTGCACCTTCCGAGGTGACGTTGGGGGTCTGAGCCCCGCCAGCGCCCAGGGGGCGGAGGAAGAGAGGCAC------CAGC---------AGCAGCAGCAGCATCTGAGGAAAAGGCAACAGTGAGGGCACGGAGGAGCCC--GCCGGCC-GCGGCCTGGGCCAGCCGACGGACAGGTCTCGCTCCGCGCACCTCACGGGCTCCAACCGCGC---GGTTCGGGACGCGAAGGGCGCCCCGCGGAGGA
i mm10.chr17               C 0 C 0
e dasNov3.JH582591            47002 1810 +    102524 I
e canFam3.chr35            26237551 3512 +  26524999 I

a score=608037.000000
s hg38.chr6_GL000254v2_alt   897918 35 +   4827813 GGCGGGGGCGGAGCC-CCGCGCGGGGT----GGGGGGAGA
s panTro5.chr6             29860695 35 + 175400573 GGCGGGGGCGGAGCC-CCGCGCGGGGT----GGGGGGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30095055 34 + 173848474 GGC-GGGGCGGAGCC-CCGCGCGGGGT----GGGGGCAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5901681 34 +   6154872 GGCGGGGGCGGAGCC-CCGCGCGGGGT----GGGGG-AGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74605863 35 + 122973662 GGCGGGGGCGGAGCC-CCGCGCGGGGT----GGGGGGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30091256 35 + 172585720 GGCGGGGGCGGAGCC-CCGCGCGGGGT----GGGGGGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29754964 35 - 170955103 GGCGGGGGCGGAGCC-CCGCGCGGGGT----GGGGGGAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2802472 35 -   2996164 GGCGGGGGCGGAGCC-CCGCGCGGGGT----GGGGGGAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     553567 35 +    766320 GGCGGGGGCGGAGCC-CCGCGCGGGGT----GGGGGGAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29009642 35 -  71996105 GGCGGGGGCGGAGCC-CCGCGTGGGGT----GGGGGGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     191775 35 +    290775 GGCGGGGGCGGAGCC-CCGCGCGGGGT----GGGGGGAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2644559 35 -   3067355 GGCGGGGGCGGAGCC-CCGAGTGGGGT----GGGGGGAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       6143 35 +    132061 GGCGGGGGCGGAGCC-CCGCGCGGGGT----GGGGGGAGA
i calJac3.chrUn_GL286223   C 0 I 682
s saiBol1.JH378357           233361 35 -    242197 GGCGGGGGCGGAGCC-CCGCGCGGGGT----GGGGGGAGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     227017 35 -   1771730 GGCGGGGGCGGAGCC-CCGCGCGGGGT----GGGGGGAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     309014 35 -    457564 GGCGGGGGCGGAGCC-CCGCGCGGGGT----GGGGGGAGA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               111951 35 + 123392446 GGCGGGGGCGGAGCC-CCGCGCGGGGT----GGGGGGAGA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     606549 35 +    730504 GGCGGGGGCGGAGCC-CCGCGCGGGGT----GGGGGGAGA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           120641 39 +  18854210 GGCGGGGGCGGAGCC-CCACGCGGGGTGAGGGGGGGGGAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57940714 33 -  94987271 GGCGGGGGCGGAG---CCGCACGGGCT----GGGGGGGAG
i mm10.chr17               C 0 I 1
s dasNov3.JH582591            48812 31 +    102524 ggcgggggcggagccggcgcgcggcgc----gggg-----
i dasNov3.JH582591         I 1810 C 0
e canFam3.chr35            26237551 3512 +  26524999 I

a score=2864402.000000
s hg38.chr6_GL000254v2_alt   897953 203 +   4827813 GGAGGAGAGAAAGCCTGTCCCCACCCTCCTCCTGCCTCCCTCGGCCCCCAACCCTCCCGGGACTCCACCTCTCACCACCTCCTCTCCCCCGGCCCCCGCGGCTCGCAGAAGCCTGGCTTACCCACGCTCCCGGCATCGGCCGCCTCAGCGCTCCCCGATTCCATCCCC-GCGGTTCCTCCTCTCCCCCAGCCCCGCT-TCCCCCA
s panTro5.chr6             29860730 203 + 175400573 GGAGGAGAGAAAGCCTGTCCCCACCCTCCTCCTGCCTCCCTCGGCCCCCAACCCTCCCGGGACTCCACCTCTCACCACCTCCTCTCCCCCGGCCCCCGCGGCTCGCAGAAGCCTGGCTTACCCACGCTCCCGGCATCGGCCGCCTCAGCGCTCCCCGATTCCATCCCC-GCGGTTCCTCCTCTCCCCCAGCCCCGCT-TCCCCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30095089 202 + 173848474 GGAGGAGAGAAAGCCTGTCCCCACCCTCCTCCTGCCTCCCTCGGCCCCCAACCCTCCCGGGACTCCACCTCTCACCACCTCCTCTCCCCCGG-CCCCGCGGCTCGCAGAAGCCTGGCTTACCCACGCTCCCGGCATCGGCCGCCTCAGCGCTCCCCGATTCCATCCCC-GCGGTTCCTCCTCTCCCCCAGCCCCGCT-TCCCCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5901715 203 +   6154872 GGAGGAGAGAAAGCCTGTCCCCACCCTCCTCCTGCCTCCCTCGGCCCCCAACCCTCCCGGGACTCCACCTCTCACCACCTCCTCTCCCCCGGCCCCCGCGGCTCGCAGAAGCCTGGCTTACCCACGCTCCCGGCATCGGCCGCCTCAGCGCTCCCCGATTCCATCCCC-GCGGTTCCTCCTCTCCCCCAGCCCCGCT-TCCCCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74605898 201 + 122973662 GGAGGAGAGAAAGCCTGTTCCCACCCTCCTCCTGCCTCCCTCGGCCCCCAACCCTCCCGGGACTCCACCTCTCACCACCTCCTCT--CCCGGCCCCCGCGGCTCGCAGGAGCCTGGCTTACCCACGCTCCCGGCATCGGCCGCCTCAGCGCTCCCCGATTCCATCCCC-ACGGTTCCTCCTCTCCCCCAGCCCTGCT-TCCCCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30091291 200 + 172585720 GGAGGAGAGAAAGCCTGTCCCCACCCTCCTCCTGCCTCCCTCGGCCCCCAACCCTCCCGGGACTCCACCTCTCACCACCTCCTCTCCCCCGGCCCCCGCGGCTCACAGGAGCCTGGCTTACCCACGCTCCCGGGATCGGCCGCCTCAGCGCTCCCCGATTCCATCCCCGGCGGT--CTCCTCT-CCCCAGCCCCGAT-T-CCCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29754999 203 - 170955103 GGAGGAGAGAAAGCCTGTCCCCACCCTCCTCCTGCCTCCCTCGGCCCCCAACCCTCCCGGGACTCCACCTCTCACCACCTCCTCTCCCCCGGCCCCCGCGGCTCACAGGAGCCTGGCTTACCCACGCTCCCGGGATCGGCCGCCTCAGCGCTCCCCGATTCCATCCCC-GCGGTTCCTCCTCTTCCCCAGCCCCGAT-TCCCCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2802507 203 -   2996164 GGAGGAGAGAAAGCCTGTCCCCACCCTCCTCCTGCCTCCCTCGGCCCCCAACCCTCCCGGGACTCCACCTCTCACCACCTCCTCTCCCCCGGCCCCCGCGGCTCACAGGAGCCTGGCTTACCCACGCTCCCGGGATCGGCCGCCTCAGCGCTCCCCGATTCCATCCCC-GCGGTTCCTCCTCTCCCCCAGCCCCGAT-TCCCCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     553602 203 +    766320 GGAGGAGAGAAAGCCTGTCCCCACCCTCCTCCTGCCTCCCTCGGCCCCCAACCCTCCCGGGACTCCACCTCTCACCACCTCCTCTCCCCCGGCCCCCGCGGCTCACAGGAGCCTGGCTTACCCACGCTCCTGGAATCGGCCGCCTCAGCGCTCCCCGATTCCATCCCC-GCGGTTCCTCCTCTCCCCCAGCCCCGCT-TCCCCCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29009677 203 -  71996105 GGAGGAGAGAAAGCCTGTCCCCACCCTCCTCCTGCCTCCCTCGGCCCCCAACCCTCCCGGGACTCCACCTCTCACCACCTCCTCTCCCCCGGCCCCCGCGGCTCACAGGAGCCTGGCTTACCCACGCTCCCGGGATCGGCCGCCTCAGCGCTCCCCGATTCCATCCCC-GCGGTTcctcctctcccctagccccgct-tccccca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     191810 203 +    290775 GGAGGAGAGAAAGCCTGTCCCCACCCTCCTCCTGCCTCCCTCGGCCCCCAACCCTCCCGGGACTCCACCTCTCACCACCTCCTCTCCCCCGGCCCCCGCGGCTCACAGGAGCCTGGCTTACCCACGCTCCTGGGATCGGCCGCCTCAGCGCTCCCCGATTCCATCCCC-GCGGTTCCTCCTCTCCCCCAGCCCCGCT-TCCCCCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2644594 203 -   3067355 GGAGGAGAGAAAGCCTGTCCCCACCCTCCTCCTGCCTCCCTCGGCCCCCAACCCTCCCGGGACTCCACCTCTCACCACCTCCTCTCCCCCGGCCCCCGCGGCTCACAGGAGCCTAGCTTACCCACGCTCCCGGGATCGGCCGCCTCAGCGCTCCCCGATTCCATCCCC-GCGGTTCCTCCGCTCCCCCAGCCCCGCT-TCCCCCA
i colAng1.NW_012115566v1   C 0 M 480
s saiBol1.JH378357           233396 203 -    242197 GGAGGAGAGAAAGCCTGTCCCCACCCTCCTCCTGCCTCCCTCGGCCCCGAACCCTCCCGGGACTCCACCTCTCACCACCTCCTCTCCCCCGGCCCCCGCAGCTTGCAGGAGCCTGGCTTACCCACGCTCCCGGGATCGGTCGCCTCAGCGCTCCCCGATTCCATCCCC-ACGGTTCCTCCTCTCCCCCAGCCCCGCT-TACCCCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     227052 203 -   1771730 GGAGGAGAGAAAGCCTGTCCCCACCCTCCTCCTGCCTCCCTCGGCCCCCAACCCTCCCGGGACTCCACCTCTCACCACCTCCTCTCCCCCGGCCCCCGCAGCTCGCAGGAACCTGGCTTACCCACGCTCCCGGGATCGGTCGCCTCAGCGTTCCCCGATTCCATCCCC-ACGGTTCCTCCTCTCCCCCAGCACCGCT-TACCCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     309049 203 -    457564 GGAGGAGAGAAAGCCTGTCCCCACCCTCCTCCTGCCTCCCTCGGCCCCCAACCCTCCCGGGACTCCACCTCTCACCACCTCCTCTCCCCCGGCCCCCGCAGCTCGCAGGAGCCTGGCTTACCCACGCTCCCGGGATCGGTCGCCTCAGCGCTCACCGATTCCATCCCC-ACGGTTCCTCCTCTCCCCCAGCCCCGCT-TACCCCA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               111986 199 + 123392446 GGAGGAGAGAAAACCTGTCCCCACCCTCCTCCTGCCTCCCTCGGTCCCCCACCCTCCCGGGACTCCACCTCTCACCGCCTCCTCTCCCGCGGCCCCCGCGGCTCGCCGGAG-CCGGCTTACCCACGCTCCCGGG-CCAGCCGCCCCAACGCTCCCCGACTCCATGCCC-GCCGTTCCTGCGCT-CCCCGGCCCCGCT-TCCCCG-
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     606584 202 +    730504 GGAGGAGAGAAAGCCTGTCCccaccctcctcctgcctccctcggccccccaccctccCGGGACTCCACCTCTCACCGCCTCCTCTCCCGCGGCCCCCGCGGCTCGCCGGAGCCCGGCTTACCCACGTTCCCGGGATCGGCCGCCCCAACGCTCCCCGACTCCGTGCCC-GCCGTTCCTGCGCTCCCCCAGCCCCGCT-TCCCCG-
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           120680 203 +  18854210 GGAGGAGAGAAAGCCTGTCCCCACCCTCCTCCAGCCTCCCTCGGCCCCCCACCCTCCCGGGACTCCACCTCTCACCACCTCCTCTCCCCCGGCCCCCGCGGCTCGCCGGAGCTCGGCTTACCCACGCTCCCGGGATCGGTCGCCTCAAGGCTCCCCAACTCCATCCCC-GCCGTTCCTCCTTTCCCCCAGCCCGGGTCCCCCCG-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57940748 174 -  94987271 GGAGGAGAGAGCGCCTGTCCCCACCCTCCTCCGGCCTCCCTCGGCCCCCCACCCTCCCGGGACTCCA----------CCTCCTCT-CAGCAGCCCCTGTGGCTAGCGCTAGCCCAGCTTACCCACGCTCAGGGGTCCCGCTACCCCATCACTCGCCTCTCGCACCCGA-AC----CCCACGCACCCCCCG---------------
i mm10.chr17               I 1 C 0
s dasNov3.JH582591            48843 119 +    102524 --AGGAGGGCGAGCCCGT-CCCACCCTCCTCCTGCCTCCCTC-GCCCCCCACCCTCCCGGGACT-------------CCTCCTCTCC----GTGCCCGCGGCTCGCCGGG-----------CCGCGCTC----------------------------------------GCGGTTcct------------ccccgcc-gccccc-
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26237551 3512 +  26524999 I
e calJac3.chrUn_GL286223       6178 682 +    132061 I

a score=255796.000000
s hg38.chr6_GL000254v2_alt   898156 21 +   4827813 GCTGGGCCC---TGCGCCCACTGC
s panTro5.chr6             29860933 21 + 175400573 GCTGGGCCC---TGCGCCCACTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30095291 21 + 173848474 GCTGGGCCC---TGCGCCCACTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5901918 21 +   6154872 GCTGGGCCC---TGCGCCCACTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74606099 21 + 122973662 GCTGGGCCC---TGCGCCCATTGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30091491 21 + 172585720 GCTGGGCCC---TGCGCCCACTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29755202 21 - 170955103 GCTGGGCCC---TGCGCCCACTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2802710 21 -   2996164 GCTGGGCCC---TGCGCCCACTGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     553805 21 +    766320 GCTGGGCCC---TGCGCCCACTGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29009880 21 -  71996105 gctgggccc---tgcgcccactgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     192013 21 +    290775 GCTGGGCCC---TGCGCCCACTGC
i manLeu1.NW_012099233v1   C 0 T 5805
s saiBol1.JH378357           233599 21 -    242197 GCTGGGCCC---TGCGCCCGCTGC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     227255 21 -   1771730 GCTGGGCCC---TGCGCCCGCTGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     309252 21 -    457564 GCTGGGCCC---TGCGCCCGCTGC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               112185 21 + 123392446 GCTCGGCCC---TGAGCCCGCCGG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     606786 21 +    730504 GCTCCGCCC---TGCGCCCGCCGG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           120883 21 +  18854210 GCTTGGCCC---TGCGCCCGCCAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57940922 20 -  94987271 GCCCTACCC---TACGTCCACCG-
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            48962 21 +    102524 ---gggcccccgcgcgcccgcggc
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26237551 3512 +  26524999 I
e calJac3.chrUn_GL286223       6178 682 +    132061 I
e colAng1.NW_012115566v1    2644797 480 -   3067355 M

a score=18240.000000
s hg38.chr6_GL000254v2_alt   898177 2 +   4827813 CC-
s panTro5.chr6             29860954 2 + 175400573 CC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30095312 2 + 173848474 CC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5901939 2 +   6154872 CC-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74606120 2 + 122973662 CC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30091512 2 + 172585720 CC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29755223 2 - 170955103 CC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2802731 2 -   2996164 CC-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     553826 2 +    766320 CC-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29009901 2 -  71996105 cc-
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378357           233620 2 -    242197 CC-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     227276 2 -   1771730 CC-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     309273 2 -    457564 CC-
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               112206 2 + 123392446 CC-
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     606807 2 +    730504 CC-
i proCoq1.NW_012152574v1   C 0 I 9
s otoGar3.GL873550           120904 2 +  18854210 CC-
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            48983 2 +    102524 -cg
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57940942 0 -  94987271 C
e canFam3.chr35            26237551 3512 +  26524999 I
e calJac3.chrUn_GL286223       6178 682 +    132061 I
e colAng1.NW_012115566v1    2644797 480 -   3067355 M
e manLeu1.NW_012099233v1     192034 5805 +    290775 T

a score=63039.000000
s hg38.chr6_GL000254v2_alt   898179 14 +   4827813 CCTCCCCCACCACG
s panTro5.chr6             29860956 14 + 175400573 CCTCCCCCACCACG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30095314 14 + 173848474 CCTCCCCCACCACG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5901941 13 +   6154872 CCT-CCCCACCACG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74606122 14 + 122973662 CCTCTCCTACCACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30091514 12 + 172585720 C--TCCCCACCACG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29755225 14 - 170955103 CCTCCCCCACCACG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2802733 14 -   2996164 CCTCCCCCACCACG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     553828 14 +    766320 CCTCCCCCACCACG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29009903 14 -  71996105 cctcccccACCACG
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378357           233622 14 -    242197 CCTCTCCCACAACG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     227278 14 -   1771730 CCTCTCCCACAACG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     309275 14 -    457564 CCTCTCCCACAACG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               112208  5 + 123392446 ---GGCCC------
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           120906  5 +  18854210 ---CTCCC------
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            48985  7 +    102524 cctcccc-------
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57940942  0 -  94987271 C
e proCoq1.NW_012152574v1     606809  9 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e calJac3.chrUn_GL286223       6178 682 +    132061 I
e colAng1.NW_012115566v1    2644797 480 -   3067355 M
e manLeu1.NW_012099233v1     192034 5805 +    290775 T

a score=759376.000000
s hg38.chr6_GL000254v2_alt   898193 75 +   4827813 CCGCGCGCCCCCTCTCCGAGCCCTGCTAACCCGGGGCCCTGGCTCTTACCTCGGCGCGCGGGCCCGGCTCCCCGG
s panTro5.chr6             29860970 75 + 175400573 CCGCGCGCCCCCTCTCCGAGCCCTGCTAACCCGGGGCCCTGGCTCTTACCTCGGCGCGCGGGCCCGGCTCCCCGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30095328 75 + 173848474 CCGCGCGCCCCCTCTCCGAGCCCTGCTAACCCGGGGCCCTGGCTCTTACCTCGGCGCGCGGGCCCGGCTCCCCGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5901954 75 +   6154872 CCGCGCGCCCCCTCTCCGATCCCTGCTAACCCGGGGCCCTGGCTCTTACCTCGGCGCGCGGGCCCGGCTCCCCGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74606136 75 + 122973662 CCGCGCGCCCCCTCTCCGAGCCCTGCTAATCCGGGGCCCTGGCTCTTACCTCGGCGCGCCGGcccggctccccgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30091526 72 + 172585720 CCGCGCG-CCCCTCTCCGAGTCCTGCTAACCGCGGGCCCTGGCTCTTACCTCGGCGCGCCGGCCCGGTTCCC--G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29755239 74 - 170955103 CCGCGCG-CCCCTCTCCGAGTCCTGCTAACCCGGGGCCCTGGCTCTTACCTCGGCGCGCCGGCCCGGTTCCCCGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2802747 74 -   2996164 CCGCGCG-CCCCTCTCCGAGTCCTGCTAACCCGGGGCCCTGGCTCTTACCTCGGCGCGCCAGCCCGGTTCCCCGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     553842 74 +    766320 CCGCGCG-CCCCTCTCCGAGCCCTGCTAACCCGGGGCCCTGGCTCTTACCTCGGCGCGCCGGCCCGGTTCCCCGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29009917 74 -  71996105 CCGCGCG-CCCCTCTCCGAGCCCTGCTAACCCGGGGCCCTGGCTCTTACCTCGGCGCGCCGGCCCGGTTCCCCGG
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378357           233636 75 -    242197 CCGCGCGCCCCTTCTCCTAGCCCTGCTAACCCGGGGCCCTGGCTCTTACCTCGGCGCGCCGGCCCGGCTCCCCAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     227292 75 -   1771730 CCGCGCGACCCTTCTCCAAGCCCTGCTAACCCGGGGCCCTGGCTCTTACCTCGGCGCGCCGGCCCGGCTCCCCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     309289 75 -    457564 CCGCGCGCCCCTTCTCCAAGCCCTGCTAACCCAGGGCCCTGGCTCTTACCTCGGCGCGCCGGCCCGGCTCCCCAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               112213 73 + 123392446 CCGCGTG-CCCCCCTCCAAGCCCCGCTTCCTCC-GGCCCTGGCTCTTACCTCGGCGCGCCGGCCCGGCTCCCCGG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     606818 74 +    730504 CCGCGTG-CCCGTCTCCAAGCCCCGCTTCCCCCGGGCCCTGGCTCTTACCTCGGCGCGCCGGCCCAGCTCCCCGG
i proCoq1.NW_012152574v1   I 9 C 0
s otoGar3.GL873550           120911 72 +  18854210 CCGCGTG-CCCCTCTCCAAGCCCTG--TTCCCGGGGCCCTGGCTCTTACCTCGGCGCGCCGGCCCAGCTCCCCGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57940942 65 -  94987271 ------GCCTCCTTGCCAAGCCCCGGT--CGTGGGGCCCCGG-TCTTACCTCGGCG-GCCGGTCCCGCTCCGCGG
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            48992 36 +    102524 ----------------------------------ggcccc-gctcttacctcggc--gccgg-ccggctccccg-
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26237551 3512 +  26524999 I
e calJac3.chrUn_GL286223       6178 682 +    132061 I
e colAng1.NW_012115566v1    2644797 480 -   3067355 M
e manLeu1.NW_012099233v1     192034 5805 +    290775 T

a score=1893927.000000
s hg38.chr6_GL000254v2_alt   898268 146 +   4827813 CTCTCCCCGGGCCTCAAGGCCCCAGGCCCGGCCGCTcctccccgctccccc-ctcccttctcctccacctt---tctcctcctcccgtccctcctccccTCGAATCCAGGCTCCAGCCTGGCCAGGGTCTCTCCCCTCCTCTCTCGCTT-C
s panTro5.chr6             29861045 146 + 175400573 CTCTCCCCGGGCCTCAAGGCCCCAGGCCCGGCCGCTcctccccgctccccc-ctcccttctcctccacctt---tctcctcctcccgtccctcctccccTCGAATCCAGGCTCCAGCCTGGCCAGGGTCTCTCCCCTCCTCTCTCGCTT-C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30095403 146 + 173848474 CTCTCCCCGGGCCTCAAGGCCCCAGGCCCGGCCGCTcctccccgctccccc-ctcccttctcctccacctt---tctcctcctcccgtccctcctccccTCGAATTCAGGCTCCAGCCTGGCCAGGGTCTCTCCCCTCCTCTCTCGCTT-C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5902029 145 +   6154872 CTCTCCCCGGGCCTCAAGGCCCCAGGCCCGGCCGctcctccccgct-cccc-ctcccttctcctccacctt---tctcctcctcccgtccctcctcccctcGAATCCAGGCTCCAGCCTGGCCAGGGTCTCTCCCCTCCTCTCTCGCTT-C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74606211 145 + 122973662 ctctccccgggcctc-aggccccaggcccggccgctcctccccgctccccc-ctcccttctcctccacctt---tctcctcctcccgtccctcctccccTCGAATCCAGGCTCCAGCCTGGCCAGGGTCTCTCCCCTCCTCTCTCGCTT-C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30091598 143 + 172585720 CTC-CCCCGGGCCTCAAGGCCCCAGGCCCGGCCGctcctccccgctcctcc------ttctcctccacctttcctcctcccctcccgtccctcctcccctcGAATCCAGGCTCCAGCCTGGCCAGGGTCTCTCCCCTCCTCTCTCGCTT-C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29755313 147 - 170955103 CTCTCCCCGGGCCTCAAGGCCCCAGGCCCGGCCGctcctccccgctccccccctcctttctcctccacctt---tctcctcctcccgtccctcctcccctcGAATCCAGGCTCCAGCCTGGCCAGGGTCTCTCCCCTCCTCTCTCGCTT-C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2802821 147 -   2996164 CTCTCCCCGGGCCTCAAGGCCCCAGGCCCGGCCGctcctccccgctccccccctcctttctcctccacctt---tctcctcctcccgtccctcctcccctcGAATCCAGGCTCCAGCCTGGCCAGGGTCTCTCCCCTCCTCTCTCGCTT-C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     553916 147 +    766320 CTCTCCCCGGGCCTCAAGGCCCCAGGCCCGGCCGCTcctccccgctccccccctcctttctcctccacctt---tctcctcctcccgtccctcctccccTCGAATCCAGGCTCCAGCCTGGCCAGGGTCTCTCCCCTCCTCTCTCGCTT-C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29009991 147 -  71996105 CTCTCCCCGGGCCTCAAGGCCCCAGGCCCGGCCGctcctccccgctccccccctcctttctcctccacctt---tctcctcctcccgtccctcctcccctcGAATCCAGGCTCCAGCCTGGCCGGGGTCTCTCCCCTCCTCTCTCGCTT-C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     186229 147 +    290775 CTCTCCCCGGGCCTCAAGGCCCCAGGCCCGGCCGCTcctccccgctccccccctcctttctcctccacctt---tctcctcctcccgtccctcctccccTCGAATCCAGGCTCCAGCCTGGCCAGGGTCTCTCCCCTCCTCTCTCGCTT-C
i manLeu1.NW_012099233v1   T 5805 C 0
s saiBol1.JH378357           233711 146 -    242197 CTCTCCCCGGGCCTCAAGGCCCCAGGCCCGGcctctcctccccgctccccc-ctcctttctcctccacctt---cctcctcctcccgtccctcctcccctAGAATCCAGGCTCCAGCCCGGCCAGGGTCTCTCCCCTCCTCTCTCGCTT-C
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     227367 146 -   1771730 CTCTCCCCCGGCCTCAAGGCCCCAGGCCCGGcctctcctccccgctccccc-ctcctttctcctccacctt---cctcttcctcccgtccctcctcccctGGAATCCAGGCTCCAGCCCGGCCAGGGTCTCTCCCCTCCTCTCTCGCTT-C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     309364 146 -    457564 CTCTCCCCGGGCCTCAAGGCCCCAGGCCCGGcctctcctccccgctccccc-ctcctttctcctccacctt---cctcctcctcccgtccctcctcccctcGAATCCAGGCTCCAGCCCGGCCAGGGTCTCTCCCCTCCTCTCTCGCTT-C
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               112286 140 + 123392446 CTCT-CCCGGGCCTCAAGGCCCCAGGCCCGGCCGCTCctccccgctccccc-tccctt----ctccacctt---tccgctccgccggtcccttctccccTGCAATCCGGGCTCCAGCCCGGCCAGGGTCTCTCCCCTCCTCTCTCGCTT--
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     606892 143 +    730504 CTCT-CCCGGGCCTCAAGGCCCCAGGCCCGGCCGCTcctccccgctccccc-tccctt-ctcctccacctt---tcccctccgcccgtcccttctccccTGGAACCCGGGCTCCAGCCTGGCCAGGGTCTCTCCCCTCCTCTCTCGCTT--
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           120983 143 +  18854210 CTCTCCCCGGGCCTCAAGGCCCCAGGCCCGGccgctcctccccgctccccc-ctcctttctcctccacctt---tcccct---cctgtccctcctcccctcGAATCCGGGCTCCAACCCGGCCAGGGTCTCTTCCCTCCTCTCTCGCTTC-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57941007 143 -  94987271 CTCTCCCCGGGCCTCAAGGGCCCAGGCCCGGCCGCGGCTCCCCGTTCTCCC-TCCCGG--TCCTCCAGCTT----CCCCTCCCCCTGTTCTTCTTCCACAGGAATCCAGGCTCCAGCCCGGCCGGGGTCTCTCCCCTTCGCGATCGCTA-C
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            49028 128 +    102524 cgctgcccgggcctccagg-cccaggcccagccgctccgccccgctccccc--tgctcgctcc-ccaccct---tcccctcctcccgg-cctcctcctcTCGGTgcccggcgccc-cccggccggggTCTCGGCCTC--------------
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26237551 3512 +  26524999 I
e calJac3.chrUn_GL286223       6178 682 +    132061 I
e colAng1.NW_012115566v1    2644797 480 -   3067355 M

a score=2763261.000000
s hg38.chr6_GL000254v2_alt   898414 178 +   4827813 CCCCAAACCCCACCCCT-GTCTCTTCTTCCCCGGGGC-GGCGGCAGCCACgggagcggggagcggggagccgggagggaaggaggcggcgccggggaccaggg-agAGCTCCCGGGCGGAGGGAAGAAGGAGGGTGCAAGGGAAGGCAGGGCGGGGGGAAGAGAGGGGAAGACCGGGGAGA
s panTro5.chr6             29861191 178 + 175400573 CCCCAAACCCCACCCCT-GTCTCTTCTTCCCCGGGGC-GGCGGCAGCCACgggagcggggagcggggagccgggagggaaggaggcggcgccggggaccgggg-agAGCTCCCGGGCggagggaagaaggagggtgcaagggaaggcagggcgggggggagagagggGAAGACCGGGGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30095549 178 + 173848474 CCCCAAACCCCACCCCT-GTCTCTTCTTCCCCGGGGC-GGCGGCAGCCACgggagcggggagcggggagccgggagggaaggaggcggcgccggggaccgggg-agAGCTCCCGGGCGGAGGGAAGAAGGAGGGTGCAAGGGAAGGCAGGGCGGGGGAAGAGAGGGGGAAGACCGGGGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5902174 178 +   6154872 CCCCAAACCCCACCCCT-GTCTCTTCTTCCCCGGGGC-GGCGGCAGCCACgggagcggggagcggggagccgggagggaaggaggcggcgccggggaccgggg-agAGCTCCCGGGCGGAGGGAAGAAGGAGGGTGCAAGGGAAGGCAGGGCGGGGGGAAGAGAGGGGAAGACCGGGGAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74606356 171 + 122973662 CCCCAAACCCCACCCCT-GTCTCTTCTTCCCCGgggc-ggcggcagccac-------gggagcggggagccgggagggaaggaggcggcgccggggaccgggG-AGAGCTCCCGGGCGGAGGGAAGAAGGAGGGTGCAGGGGAAGGCAGGGCGGGGGGAAGAGAGGGGAAGACCGGGGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30091741 171 + 172585720 CCCCAAACCCCACCCCT-GTCTCTTCTTCCCCGgggc-ggcggcagccac-------gggagcggggagccgggagggaaggaggcggcgccggggaccggtg-agAGCTCCCGGGCGGAGGGAAGAAGGAGGGTGCAGGGGAAGGCAGGGCGGGGGGAAGAGAGGGGAAGACCGGGGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29755460 171 - 170955103 CCCCAAACCCCACCCCT-GTCTCTTCTTCCCCGGGGC-GGCGGCAGCCAC-------GGGAGCGGGGAGCCGGGAGGGAAGGAGGCGGCGCCGGGGACCGGTG-AGAGCTCCCGGGCGGAGGGAAGAAGGAGGGTGCAGGGGAAGGCAGGGCGGGGGGAAGAGAGGGGAAGACCGGGGAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2802968 171 -   2996164 CCCCAAACCCCACCCCT-GTCTCTTCTTCCCCGGGGC-GGCGGCAGCCAC-------GGGAGCGGGGAGCCGGGAGGAAAGGAGGCGGCGCCGGGGACCGGTG-AGAGCTCCCGGGCGGAGGGAAGAAGGAGGGTGCAGGGGAAGGCAGGGCGGGGGGAAGAGAGGGGAAGACCGGGGAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     554063 171 +    766320 CCCCAAACCCCACCCCT-GTCTCTTCTTCCCCGgggc-ggcggcagccac-------gggagcggggagccgggagggaaggaggcggcgccggggaccggtg-agAGCTCCCGGGCGGAGGGAAGAAGGAGGGTGCAGGGGAAGGCAGGGCGGGGGGAAGAGAGGGGAAGACCGGGGAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29010138 171 -  71996105 CCCCAAACCCCACCCCT-GTCTCTTCTTCCCCGGGGC-GGCGGCAGCCAC-------gggagcggggagctgggagggaaggaggcggcgccggggaccggtg-agAGCTCCCGGGCGGAGGGAAGAAGGAGGGTGCAGGGGAAGGCAGGGCGGGGGGAAGAGAGGGGAAGACCGGGGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     186376 171 +    290775 CCCCAAACCCCACCCCT-GTCTCTTCTTCCCCGgggc-ggcggcagccac-------gggagcggggagccgggagggaaggaggcggcgccggggaccggtg-agAGCTCCCGGGCGGAGGGAAGAAGGAGGGTGCAGGGGAAGGCAGGGCGGGGGGAAGAGAGGGGAAGACCGGGGAGA
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223       6860 173 +    132061 CCCCAAACCCCAACCCTGGTCTCTCCTTCCCgggggagggcggcag-cac-------gggagcggggagccaggagggaaggaggcggcgccggggaccgggtgagagctcccgggcggagggaggaaggagggtgcaggggaaggcagggcggggggaagagaggggaagaccggggaga
i calJac3.chrUn_GL286223   I 682 C 0
s saiBol1.JH378357           233857 171 -    242197 CCCCAAACCCCACCCCT-GTCTCTCCTTCCCCggggc-ggcggcagccac-------gggagcggggagccgggagggaaggaggcggcgccggggaccgggt-agagctcccgggcggagggaggaaggagggtgcaagggaaggcagggcggggggatgagaggggaagaccggggaga
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     227513 171 -   1771730 CCCCAAACCCCACCCCT-GTCTCTCCTTCCCcggggc-ggcggcggccac-------gggagcggggagccgggagggaaggaggcggcgccggGGACCGGGG-AGAGCTCCCGGGCGGAGGGAGGAAGGAGGGTGCAGGGGAAGGCAGGGCGGGGGGATGAGAGGGGAAGACCGGGGAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     309510 171 -    457564 CCCCAAACCCCACCCCT-GTCTCTCCTTCCCCGGGGC-GGCGGCAGCCAC-------GGGAGCGGGGAGCCGGGAGGGAAGGAGGCGGCGCCGGGGACCGGGG-AGAGCTCCCGGGCGGAGGGAGGAAGGAGGGTGCAGGGGAAGGCAGGGCGGGGGGAAGAGAGGGGAAGACCGGGGAGA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               112426 168 + 123392446 CCCCAAACCCCACCCCT-GTCTCTCCTTCCCcggggc-ggcggcggccaa-------gggagcggggagcc-ggagggaaggaggcggcgccggGGACC-GGG-AAAGCTCCTGGGTGGAGGGATGGAGGAGGGTGCAGGGGAAGGCAGGGC-GGGGGAAAAGAGGGGGAGACCGGGGAGA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     607035 171 +    730504 CCCCAAACCCCACCCCT-GTCTCTCCTTCCCcggggc-ggcggcggccac-------gggagcggggagccgggagggaaggaggcggcgccggGGACCGGGG-AAAGCTCTCGGGTGGAGGGAAGAAGGAGGGTGCAGGGGAAGACAGGGCGGGGGGAAAAGAGGGGGGGACCGGGGAGA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           121126 171 +  18854210 CCCCAAACCCCACCCCT-GTCTCTCCTTCCCCggggc-ggcggcggccac-------gggagcggggagccggcagggaaggaggcggcgccggggaccgggg-aaagctccggggcggagggaagaaggagggtgcaggggaagacagggaggggggaagagagggggAGACCAGGGAGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57941150 168 -  94987271 CCGCAAACCCCACCCCC-GTCTCTCCTTCCCCggggc-gacggcggccgc-------gagagcacggtgccgggagggaaggaggcggcgccggggaccgggg-a-agctctcgggcggagggaggaaggagggtgcaggggaagacggggcggggggaagggagggggagatcggaga--
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            49156 163 +    102524 CCCCAAACCCCACCCCC-GTCTCTCCTTCCCCggggc-ggcggcggccgc-------gggagccggcggccgggagggaaggaggcggcgccggggaccgggg-a-cgctaccgggcggagggaggaaggagggggcaggggaggacggggcgggggaa-------gggggaccgcggcga
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26237551 3512 +  26524999 I
e colAng1.NW_012115566v1    2644797 480 -   3067355 M

a score=1677842.000000
s hg38.chr6_GL000254v2_alt   898592 103 +   4827813 GGGCGCCTCCCACAACCCGAGCCCCGGGAGCCGCCCCGGATCCCAGCCCCGCCCTGGACCGCCCACAGCGCGGTGGGGCGGGCGGTGGAGAGGCGCGGGGC--TG
s panTro5.chr6             29861369 103 + 175400573 GGGCGCCTCCCACAACCCGAGCCCCGGGAGCCGCCCCGGATCCCAGCCCCGCCCTGGACCGCCCACAGCGCGGTGGGGCGGGCGGTGGAGAGGCGCGGGGC--TG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30095727 103 + 173848474 GGGCGCCTCCCACAACCCGAGCCCCGGGAGCCGCCCCGGATCCCAGCCCCGCCCTGGACCGCCCACAGCGCGGTGGGGCGGGCGGTGGAGAGGCGCGGGGC--TG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5902352 103 +   6154872 GGGCGCCTCCCACAACCCGAGCCCCGGGAGCCGCCCCGGATCCCAGCCCCGCCCTGGACCGCCCACAGCGCGGTGGGGCGGGCGGTGGAGAGGCGCGGGGC--TG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74606527 103 + 122973662 GGGCGCCTCCCACAACCCGAGCCCCGGGAGCCGCCCCGGATCCCAGCCCCGCCCTGGACCGCCCACAGCGCAGTGGGGCGGGCGGCGGAGAGGCGCGGGGC--TG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30091912 103 + 172585720 GGGCGCCTCCCACAACCCGAGCCCCGGGAGCCGCCCCGGATCCCAGCCCCGCCCTGGACCGCCCACAGCGCGGTGGGGCGGGCGGCGGAGAGGCGCGCGGC--TG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29755631 103 - 170955103 GGGCGCCTCCCACAACCCGAGCCCCGGGAGCCGCCCCGGATCCCAGCCCCGCCCTGGACCGCCCACAGCGCGGTGGGGCGGGCGGCGGAGAGGCGCGCGGC--TG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2803139 103 -   2996164 GGGCGCCTCCCACAACCCGAGCCCCGGGAGCCGCCCCGGATCCCAGCCCCGCCCTGGACCGCCCACAGCGCGGTGGGGCGGGCGGCGGAGAGGCGCGCGGC--TG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     554234 103 +    766320 GGGCGCCTCCCACAACCCGAGCCCCGGGAGCCGCCCCGGATCCCAGCCCCGCCCTGGACCGCCCACAGCGCGGTGGGGCGGGCGGCGGAGAGGCGCGCGGC--TG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29010309 103 -  71996105 GGGCGCCTCCCACAACCCGAGCCCCGGGAGCCGCCCCGGATCCCAGCCCCGCCCTGGACCGCCCACAGCGCAGTGGGGCGGGCGGCGGAGAGGCGCGCGGC--TG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     186547 103 +    290775 GGGCGCCTCCCACAACCCGAGCCCCGGGAGCCGCCCCGGATCCCAGCCCCGCCCTGGACCGCCCACAGCGCGGTGGGGCGGGCGGCGGAGAGGCGCGCGGC--TG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2645277 103 -   3067355 GGGCGCCTCCCACAACCCGAGCCCCGGGAGCCGCCCCGGATCCCAGCCCCGCCCTGGACCGCCTACAGCGCGGTGGGGCGGGCAGCGGAGAGGCGCGCGGC--TG
i colAng1.NW_012115566v1   M 480 C 0
s calJac3.chrUn_GL286223       7033 103 +    132061 gggCACCTCCCACAACCCGAGCCCCGGGAGCCGCCCCGGATCCCAGCCCCGCCTTGGACCGCCCACAGCGCTGTGGGGCGGGCGGCGAAGAGGAGCGGGGC--GG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           234028 103 -    242197 gggcgCCTCCCACAATCCGAGCCCCGGGAGCCGCCCCGGATCCCAGCCCCGCCTTGGACCGCCCACAGCGCTGTGGGGCGGGCGGTGGAGCGGAGCGGGGC--GG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     227684 103 -   1771730 GGACGCCTCCCACAACCCGAGCCCCGGGAGCCGCCCCGGATCCCAGCCCCGCCTTGGACCGCCCACAGCGCTGTGGGGCGGGCGGCGGAGAGGAGCGGGGC--GG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     309681 103 -    457564 GGGCGCCTCCCACAACCCGAGCCCCGGGAGCCGCCCCGGATCCCAGCCCCGCCTTGGACCGCCCACAGCGCTGTGGGGCGGGCGGCGGAGAGGAGCGGGGC--GG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               112594 102 + 123392446 GGGCGCCTCCCACAAcccgagccccgggagccgccccggatcccggccccgccctggaccgcccacagcgcc-gggggcgggcgggggagcggcgcggggctg--
i micMur3.chr6             C 0 I 123
s proCoq1.NW_012152574v1     607206 101 +    730504 GGGAGCCTCCCACAAcccgagccccgggagccgccccggatcccggccccgccctggaccgcccacagcgccggGGGGCGGGCGGGGGAGCGGCGCGGGCC----
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           121297 101 +  18854210 GGGCGCCTCCCACAACCCGAGCCCCGGGAGCCGCCCCGGATCCCGGCCCCGCCCTGGACCGCCCACAGCGCTGGGGGGCGGGCGGCCGAGAGGCACAGGGC----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57941318  81 -  94987271 gggCGCCTCCCACAACCCGAGCCCCAGGAGCCGCCCCGGATCCCGGCCCCTCCCTAGACCGCCCACGGCGCGGGAGGGCGT------------------------
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            49319  66 +    102524 gggcgCCTCCCACCAGCCGAG--CCGGGAgccgccccg------------------gaccgccccccgcgccggggggc--------------cgcgaga-----
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26237551 3512 +  26524999 I

a score=1678557.000000
s hg38.chr6_GL000254v2_alt   898695 133 +   4827813 AGAGGTGGGGGAGAGGGAGGTGCCCTGGTGCACACGCACTCGTCGGG-GGGCGCCGGTCACTGCCGAGGGACCTGCGGGCCAAACAACTGGAAGCTGGGGT----------GGGGGAG----AGGGAACCCGAGCCAAAGGCAGAGGA
s panTro5.chr6             29861472 133 + 175400573 AGAGGTGGGGGAGAGGGAGGTGCACTGGTGCACACGCACTCGTCGGC-GGGCACCGGTCACTGCCGAGGGACCTGCGGGCCAAACAACTGGAAGCTGGGGT----------GGGGGAG----AGGGAACCCGAGCCAAAGGCAGAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30095830 133 + 173848474 AGAGGTGGGGGAGAGGGAGGTGCACTGGTGCACACGCACTCGTCGGC-GGGCACCGGTCACTGCCGAGGGACCTGCGGGCCAAACAACTGGAAGCTGGGGT----------GGGGGAG----AGGGAACCCGAGCCAAAGGCAGAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5902455 133 +   6154872 AGAGGTGGGGGAGAGGGAGGTGCACTGGTGCACACGCACTCGTCGGC-GGGCACCGGTCACTGCCGAGGGACCTGCGGGCCAAACAACTGGAAGCTGGGGT----------GGGGGAG----AGGGAACCCGAGCCAAAGGCAGAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74606630 133 + 122973662 AGAGGTGGGGGAGAGGAAGGTGCACTGGTGCACACGCACTCGTCAGC-GGGCACCGGTCACTGCCGAGGGACCTGCGGGCCAAACAACTGGAAGCTGGGGT----------AGGGGTG----AGGGAACCCGAGCCAAAGGCAGAGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30092015 133 + 172585720 AGAGGTGGGAGAGAGGGAGGTGCGCTGGTGCACACGCACTCGCCGGC-GGGCACTGGTCACTACCGGGGGACCTGCGGGCAAGACTACTGGAAGCTGGGGT----------CGGGATG----AGGGAACCCGAGCCAAAGGCAGAGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29755734 133 - 170955103 AGAGGTGGGAGAGAGGGAGGTGCGCTGGTGCACACGCACTCGCCGGC-GGGCACTGGTCACTACCGGGGGACCTGCGGGCAAGACTACTGGAAGCTGGGGT----------CGGGATG----AGGGAACCCGAGCCAAAGGCAGAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2803242 133 -   2996164 AGAGGTGGGAGAGAGGGAGGTACGCTGGTGCACACGCACTCGCCGGC-GGGCACTGGTCACTACCGGGGGACCTGCGGGCAAGACTACTGGAAGCTGGGGT----------CGGGATG----AGGGAACCCGAGCCAAAGGCAGAGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     554337 133 +    766320 AGAGGTGGGAGAGAGGGAGGTGCGCTGGTGCACACGCACTCGCCGGC-GGGCACTGGTCACTACCGGGGGACCTGCGGGCAAGACTACTGGAAGCTGGGGT----------CGGGATG----AGGGAACCCGAGCCAAAGGCAGAGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29010412 133 -  71996105 AGAGGTGGGAGAGAGGGAGGTGCGCTGGTGCACACGCACTCGCCGGC-GGGCACTGGTCACTACCGGAGGACCTGCGGGCAAGACTACTGGAAGCTGGGGT----------CGGGATG----AGGGAACCCGAGCCAAAGGCAGAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     186650 133 +    290775 AGAGGTGGGAGAGAGGGAGGTGCGCTGGTGCACACGCACTCGCCGGC-GGGCACTGGTCACTACCGGGGGACCTGCGGGCAAGACTACTGGAAGCTGGGGT----------CGGGATG----AGGGAACCCGAGCCAAAGGCAGAGGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2645380 133 -   3067355 AGAGGTGGGAGAGAGGGAGGTGCACTGGTGCACACGCACTCGCCGCC-GGGCACTGGTCACTACCCGGGGACCTGCGGGCAAGACTACTGGAAGCTGGGGT----------CGGGATG----AGGGAACCCGAGCCAAAGGCAGAGGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       7136 133 +    132061 AGAGGTGGGGGAGAGGGAGGCGCGCTGGTACACACGCACTCACCGGC-GGGCACCGGTCGCCGCCGAGGGACTTCTGGGCTAGACAACTGGAAGCTGGGGT----------GGGGGTG----AAGGAACCTGAGCTAAAGGCAGAGGA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           234131 133 -    242197 AGAGGTGGGGGAGAGGGAGGCGCACTGGTGCACGCATACTCAACGGC-GGGCACCGGTCACTGCCGAGGGACCTCTGGGCAAGACAACTGGATGCTGGGGT----------GGGGGTG----AAGGAACCTGAGCTAGAGGCAGAGGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     227787 133 -   1771730 AGAGGTGGGGGAGAGGGAGGTGCACTGGTGCACACGCACTCACCGGC-GGGCACCGGTCACTGCCGAGGGACCTCTGGGCAAGACAACTGGAAGCTGGGGT----------GGGAGTG----AAGGAACCTGAGCTAAAGGCAGAgga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     309784 133 -    457564 AGAGGTAAGGGAGAGGGAGGCGCACTGGTGCACACGCACTCACCGGC-GAGCACCGGTCACTGCCGAGGGACCTCTGGGCAAGATAACTGGAAACTGGGGT----------GGGGGAG----AAGGAACCTGAGCTAAAGGCAGAgga
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     607307 130 +    730504 -GAGGTGGCGCAGAGGGAGACTCACTGGTGCTCACGCAC--ACGGGC-GGGGACCGATCGCGGCAGGGGGACCTACGGCCAATATAGCTGGACACTGGGGT----------GGGGGTG----AGGGGACCCGAGCCAAAGGCAGAGGA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           121398 133 +  18854210 AGAGGTAGCTGAGAGCAAGACACACTGGTACACACGCACATACGGGC-GGGGACCGATCACCGCAGAGGGACCTACGACCGAGACAACTGGAAACTGGGGT----------GGGGGTG----AAGGGACCTGAGCCTAAGGCAAAAGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57941399 140 -  94987271 AGAGGTAGGATGGAGG--GGAACATAGGCGACCACGCAT--GCAGGCGGGGGACTAAGAGCTGCCGAGAGACCCGCAGACTAGACTGATGGAGACAGGAGGGGGGGCTGTAGGGGGTT----ATAGGACCCAAGCCTAAAGCAGAGGA
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            49385 102 +    102524 ---------------ggaggcgccgggg----cgcgcgcTCACCAGG-G---------------CGAGGGACCCCCGGG-AGGAAAGCGggggaccggggt----------gggggggtggcgggggacccgagccgagggcggagca
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               112696 123 + 123392446 I
e canFam3.chr35            26237551 3512 +  26524999 I

a score=1098980.000000
s hg38.chr6_GL000254v2_alt   898828 65 +   4827813 GCTGGCGCTGAGACAGGGAGTCTGGGATGAAGGTGGAGAAAG---ACGGCTGCACAAAGAGAAGGCAG
s panTro5.chr6             29861605 65 + 175400573 GCTGGCGCTGAGACAGGGAGTCTGGGATGAAGGTGGAGAAGG---ACGGCTGCACAAAGAGAAGGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30095963 65 + 173848474 GCTGGCGCTGAGACAGGGAGTCTGGGATGAAGGTGGAGAAGG---ACGGCTGCACAAAGAGAAGGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5902588 65 +   6154872 GCTGGCGCTGAGACAGGGAGTCTGGGATGAAGGTGGAGAAGG---ACGGCTGCACAAAGAGAAGGCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74606763 65 + 122973662 GCTGGCGCTGAGACAGGGAGTCTGGGATGAAGGTGGAGAAGG---ACGGCTGCACAAAGAGAAGGCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30092148 65 + 172585720 GCTGGCGCTGAGACAGGGAGTCTGGGATGAAGGTGGAGAAGG---ACGGCTGCACAAAGAGAAGGCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29755867 65 - 170955103 GCTGGCGCTGAGACAGGGAGTCTGGGATGAAGGTGGAGAAGG---ACGGCTGCACAAAGAGAAGGCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2803375 65 -   2996164 GCTGGCGCTGAGACAGGGAGTCTGGGATGAAGGTGGAGAAGG---ACGGCTGCACAAAGAGAAGGCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     554470 65 +    766320 GCTGGCGCTGAGACAGGGAGTCTGGGATGAAGGTGGAGAAGG---ACGGCTGCACAAAAAGAAGGCAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29010545 65 -  71996105 GCTGGCGCTGAGACAGGGAGTCTGGGATGAAGGTGCAGAAGG---ACGGCTGCACAAAAAGAAGGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     186783 65 +    290775 GCTGGCGCTGAGACAGGGAGTCTGGGATGAAGGTGGAGAAGG---ACGGCTGCACAAAAAGAAGGCAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2645513 65 -   3067355 GCTGGCGCTGGGACAGGGAGTCTGGAATGAAGGTGGAGAAGG---ACGGCTGCACAAAGAGAAGGCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       7269 65 +    132061 GCTGGCGCTGAGACAGGGAGTCTGGGATGGAGGTGGAGAAGG---ACGGCTGCACAAAGAGAAGGCAG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           234264 65 -    242197 GCTGGCGCTGAGACAGGGAGTCTGGGATGGAGGTGGAGAAGA---ACTGCTGCACAAAGAGAAGGCAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     227920 65 -   1771730 gctggcgctgagacagggagtctgggatggaggtggagAAGG---ACGGCTGCACAAAGAGAAGGCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     309917 65 -    457564 gctggcgctgagacagggagtctgggatggaggtggagAAGG---ACGGCTGCACAAAGAGAAGGCAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               112819 64 + 123392446 GCTGGCGCTGAGTCCGGGAG-CTGGGGTGAAGGTGCAGAAAG---GCGACTGCACAAAGAGGAGGCAG
i micMur3.chr6             I 123 I 2770
s proCoq1.NW_012152574v1     607437 64 +    730504 GCTGGCGCTGAGACAGGGAG-CCGGGATGAAGGTGCAGAGAG---GCGGCTGCACAAAGAGGAGGCAG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           121531 65 +  18854210 GCTGGCTGTGAGACAGGGAATCCGGGATGAATGTGGAGTAAG---CCGGTTGCACAAAGAGAAGGCAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57941539 67 -  94987271 GCTGGCACAAAGACAAGGAGCCTGG-ATGAAGGTGAAGAAAGGATGTGTTTGTACAAAAGGAAGACAG
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            49487 64 +    102524 gct-gcgccgagacgcggggtctgggaggaaggcggagaagg---acggctgcacaaagagaaggcag
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26237551 3512 +  26524999 I

a score=910476.000000
s hg38.chr6_GL000254v2_alt   898893 90 +   4827813 CCCTAGATCCGGGTGagaggagagagg----cagaggcagatgcc------cag--ga---gaACTGCGACCGGAGGGCGAGAA-AGAAG----CCTGGGTCAGAAG----------GAG
s panTro5.chr6             29861670 90 + 175400573 CCCTGGATCCGGGTGagaggagagagg----cagaggcagatgcc------cag--ga---gaACTGCGACCGGAGGGCGAGAA-AGAAG----CCTGGGTCAGAAG----------GAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30096028 90 + 173848474 CCCTGGATCCGGGTGagaggagagagg----cagaggcagatgcc------cag--ga---gaACTGCGACCGGAGGGCGAGAA-AGAAG----CCTGGGTCAGAAG----------GAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5902653 90 +   6154872 CCCTGGATCCGGGTGagaggagagagg----cagaggcagatgcc------cag--ga---gaACTGCGACCGGAGGGCGAGAA-AGAAG----CCTGGGTCAGAAG----------GAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74606828 90 + 122973662 CCCTGGATCCGGGTGAGAGGAGAGAGG----CAGAGATAGATGCC------CAG--GA---GAACTGCTACCGGAGGGCGAGAA-AGAAG----CCTGGGTCAGAAG----------GAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30092213 89 + 172585720 CCCTGGATCCGGGTGACAGGAGAGAAG----CAGAG------GCC------CAGGAGA---GAACTGCGACCGGAGGGCAAGAA-AGAAGAAA-CCTGGGTCAGAAG----------GAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29755932 89 - 170955103 CCCTGGATCCGGGTGACAGGAGAGAAG----CAGAG------GCC------CAGGAGA---GAACTGCGACCGGAGGGCAAGAA-AGAAGAAA-CCTGGGTCAGAAG----------GAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2803440 89 -   2996164 CCCTGGATCCGGGTGACAGGAGAGAAG----CAGAG------GCC------CAGGAGA---GAACTGCGACCGGAGGGCAAGAA-AGAAGAAA-CCTGGGTCAGAAG----------GAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     554535 89 +    766320 CCCTGGATCCGGGTGACAGGAGAGAAG----CTGAG------GCC------CAGGAGA---GAACTGCGACCGGAGGGCAAGAA-AGAAGAGA-CCTGGGTCAGAAG----------GAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29010610 87 -  71996105 CCCTGGATCCGGGTGACAGGAGAGAGG----CAGAG------GCC------CAG--GA---GAACTGCGACCGGAGGGCAAGAA-AGAAGAAA-CCTGGGTCAGAAG----------GAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     186848 89 +    290775 CCCTGGATCCGGGTGACAGGAGAGAAG----CTGAG------GCC------CAGGAGA---GAACTGCGACCGGAGGGCAAGAA-AGAAGAGA-CCTGGGTCAGAAG----------GAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2645578 87 -   3067355 CCCTGGATCCGGGTGACAGGAGAGAGG----CAGAG------GCC------CAG--GA---GAACTGCGACCGGAGGGCAAGAA-AGAAGAAA-CCTGGGTCAGAAG----------GAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       7334 97 +    132061 CCCTGGATCCGGGTGAGAAGAGAGAGG----CAGAG------GCC------CAA--AA---GAACTGAGACCCGAGGACTGGAA-AGAAGCAG-CCTGGGTCAGGAGGGGAGTGGGCGAG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           234329 97 -    242197 CCCTGGATCCGGGTGAGAGGAGAGAGG----CAGAG------GCC------CAA--AA---GAACTGAGACCCGAGGACTGGAA-AGAAGCAG-CCTGGGTCAGAATGGGGGTGGGTGGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     227985 97 -   1771730 CCCTGGATCCGGGTGAGAGGAGACAGG----CAGAG------GCC------CAA--AA---GAACTGAGACCCGAGGACTGGAA-AGAAGCAG-CCTGGGTCAGAAGGGGAGTGGGCGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     309982 97 -    457564 CCCTGGATCCGGGTGAAAGGAGAGAGG----CAGAA------GCC------CAA--AA---GAACTGAGACCCGAGGACTGGAA-AGAAGCAG-CCTGGGTCAGAAGGGGAGTGGGCGAG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     607501 89 +    730504 CCCTGGATTCGGGTGagaggagagaga----cagag------gcc-agggccat--ga---gaactgagaccggtggaaaagaa-agaag----ccagggtcagaag----------gaG
i proCoq1.NW_012152574v1   C 0 I 467
s otoGar3.GL873550           121596 92 +  18854210 CCCTGGATTCGGGTGAGAG--GAGAGA----CAGAG------GCCAAGGGCCAT--GA---GAACTGAGAACGGTGGGAAAGAA-AGAGGAAATCCAGGGTCACAAG----------GAG
i otoGar3.GL873550         C 0 I 17
s mm10.chr17               57941606 86 -  94987271 ATCTGGA-CCTGGCGTAAGGAGGGAAGACGTCATAT------GCC------TG---GG---GAACAGACCTTGAAGGGGAAGGG-AGAAT----CAAGGGTCAAAAG----------GGC
i mm10.chr17               C 0 I 5
s dasNov3.JH582591            49551 68 +    102524 --------ccggg---gtgggcagggg----ctggg------ggc------cgg--gggctgaaccgagacgggtgggcgaggacagaag----ccggggc-------------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e canFam3.chr35            26237551 3512 +  26524999 I

a score=3946832.000000
s hg38.chr6_GL000254v2_alt   898983 391 +   4827813 GTGGGGGAGGGGG-ACTGAGGACCACCTAAGCGCAAGAAGGGTTGGGTGTAGAAGAGATTTCTGGGAGACTAGAGCAGCTCCATGGTCCAGCAGCATTGCTACTCGCCTGCT--CTGC-AGGGAACGCGCAGAACGGATTGGAGGC-------------------------AAAAAACAAA--------A----C------------------AGGGAGGGGGACATCAAGGAGAGAAATTGAAGT--ACGAAGGGAGTAAAAGGACAAGAG--AAAAGAACCTCAGGGTGGTTTAGAAGCCAGTATTACCTGATGTACTCCAGCAGAGCCTAGCAAACAGTATTTCTTGACCAAGGGCAAACTGGAAGCTCTAAAGAC--AGCAG----GTACAG---ACCTTTTTGACGGCTC-CAGAAGCTCTTGGCTATACCTTGAAGTGGAGGGGGgtgtgtgtgtgtg
s panTro5.chr6             29861760 388 + 175400573 GTGGGGGAGGGGG-ACTGAGGACCACCTAAGCGCAAGAAGGGTTGGGTGTAGAAGAGATTTCTGGGAGACTAGAGCAGCTCCATGGTCCAGCAGCATTGCTACTCGCCTGCT--CTGC-AGGGAACGCGCAGAACGGATTGGAGGC-------------------------AAAAAACAAA--------A----C------------------AGGGAGGGGGACAT-AAGGAGAGAAATTGAAGT--ACGAAGGGAGTAAAAGGACAAGAGAAAAAAGAACCTCCGGGTGGTTTAGAAGCCAGTATTACCTGATGTACTCCAGCAGGGCCTAGCAAACAGTATTTCTTGACCAAGGGCAAACTGGAAGCTCTAAAGAC--AGCAG----GTACAG---ACCTTTTTGACGGCTC-CAGAAGCTCTTGGCTATACCTTGAAGTGGAGGG----gtgtgtgtgtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30096118 390 + 173848474 GTGGGGGAGGGGG-ACTGAGGACCACCTAAGCGCAAGAAGGGTTGGGTGTAGAAGAGATTTCTGGGAGACTAGAGCAGCTCCATGGTCCAGCAGCATTGCTACTCGCCTGCT--CTGC-AGGGAACGCGCAGAACGGATTGGAGGC-------------------------AAAAAACAAA--------A----C------------------AGGGAGGGGGACAT-AAGGAGAGAAATTGAAGT--ACGAAGGGAGTAAAAGGACAAGAGAAAAAAGAACCTCCGGGTGGTTTAGAAGCCAGTATTACCTGATGTACTCCAGCAGGGCCTAGCAAACAGTATTTCTTGACCAAGGGCAAACTGGAAGCTCTAAAGAC--AGCAG----GTACAG---ACCTTTTTGACGGCTC-CAGAAGCTCTTGGCTATACCTTGAAGTGGAGGG--gtgtgtgtgtgtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5902743 390 +   6154872 GTGGGGGAGGGGG-ACTGAGGACCACCTAAGCGCAAGAAGGGTTGGGTGTAGAAGAGATTTCTGGGAGACCAGAGCAGCTCCATGGTCCAGCAGCATTGCTACTCGCCTGCT--CTGC-AGGGAACGCGCAGAACGGATTGGAGGC-------------------------AAAAAACAAA--------A----C------------------AGGGAGGGGGACATCAAGGAGAGAAATTGAAGT--ACGAAGGGAGTAAAAGGACAAGAGAAAAAAGAACCTCCGGGTGGTTTAGAAGCCAGTATTACCTGATGTACTCCAGCAGGGCCTAGCAAACAGTATTTCTTGACCAAGGGCAAACTGGAAGCTCTAAAGAC--AGCAG----GTACAG---ACCTTTTTGACGGCTC-CAGAAGCTCTTGGCTATACCTTGAAGTGGAGGG--G-gtgtgtgtgtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74606918 390 + 122973662 GTGGGGGAGGGGG-ACTGAGGACCACCTAAGCGCAAGAAGGGTTGGGTGTAGAAGAGATTTCTGGGAGACTAGAGCAGCTCCATGGTCCAGCAGCATTGCTACTCGCCTGCT--CTGC-AGGGAACGCGCAGAACGGATTGGAGGC-------------------------AAAAAACAAA--------A----CG-----------------GGGGGGGGGGACATCAAGGAGAGAAATTGAGGT--ACGAAGGGAGTAAAAGGACAAGAGAAAAAAGAACCTCCGGGTGGTTTAGAAGCCAGTATTATCTAATGTACTCCAGCAGGGCCTAGCAAAC--TATTTCTTGACCAAGGGCAAACTGGAAGCTCTAAAGAC--AGCAG----GTACAG---ACCTTTTTGACAGCTC-CAGAAGCTCTTGGCTATACCTTGAAGTGGAGGA--GTGTGTGTGTGTG
i nomLeu3.chr1a            C 0 M 905
s rheMac8.chr4             30092302 380 + 172585720 GTGGGGGAGGGGG-GCTGAGGGCCACTTAAGCGCGAGAAGTGTTGGGTATAGAAAAGATTTCTGGGAGACTAGAGCAGCTCCATGGTCCAGCAGCATTGCTACTCGCCTGCT--CTGC-AGGGAACGCGCAGAACGGGTTGGAGGC----------------------AAAAAAAAAAAAA--------A----A------------------GGGAGGGGGGACATCAAGGAGAGAAATTAAGGT--ACGAAGGGAGTAAAAGGACAAGAGAAAGAAGAACCTCCAGGTGG-TTAGAAGCCAACATTATCTAATGTACTCCAGCAGGGCCTAGCAAACAGTATTTCTTGACCAAGGGCAAACTGGAAGCTCTGAAGAC--AGCAG----GTACAG---ACCTTTCTGACAGCTC-CAGAAGCTCTTGGCTATACCTTGAAGTGGAGGG---------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29756021 377 - 170955103 GTGGGGGAGGGGG-GCTGAGGGCCACTTAAGCGCGAGAAGTGTTGGGTATAGAAAAGATTTCTGGGAGACTAGAGCAGCTCCATGGTCCAGCAGCATTGCTACTCGCCTGCT--CTGC-AGGGAACGCGCAGAACGGGTTGGAGGC-------------------------AAAAAAAAAA--------A----A------------------AGGGAGGGGGACATCAAGGAGAGAAATTAAGGT--ACGAAGGGAGTAAAAGGACAAGAGAAAGAAGAACCTCCAGGTGG-TTAGAAGCCAACATTATCTAATGTACTCCAGCAGGGCCTAGCAAACAGTATTTCTTGACCAAGGGCAAACTGGAAGCTCTGAAGAC--AGCAG----GTACAG---ACCTTTCTGACGGCTC-CAGAAGCTCTTGGCTATACCTTGAAGTGGAGGG---------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2803529 388 -   2996164 GTGGGGGAGGGGG-GCTGAGGGCCACTTAAGCGCGAGAAGTGTTGGGTATAGAAAAGATTTCTGGGAGACTAGAGCAGCTCCATGGTCCAGCAGCATTGCTACTCGCCTGCT--CTGC-AGGGAACGCGCAGAACGGGTTGGAGGCa-aaaaaa-------------aaaaaaaaaaaaaa--------a----a------------------aGGGAGGGGGACATCAAGGAGAGAAATTAAGGT--ACGAAGGGCGTAAAAGGACAAGAGAAAGAAGAACCTCCAGGTGG-TTAGAAGCCAACATTATCTAATGTACTCCAGCAGGGCCTAGCAAACAGTATTTCTTGACCAAGGGCAAACTGGAAGCTCTGAAGAC--AGCAG----GTACAG---ACCTTTCTGACGGCTC-CAGAAGCTCTTGGCTATACCTTGAAGTGGAGGG---------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     554624 384 +    766320 GTGGGGGAGGGGG-GCTGAGGGCCACTTAAGCGCGAGAAGTGTTGGGTATAGAAAAGATTTCTGGGAGACTAGAGCAGCTCCATGGTCCAGCAGGATTGCTACTCGCCTGCT--CTGC-AGGGAACGCGCAGAACGGATTGGAGGC-----ACa-------------aaaaaaaaaaaaaa--------a----a------------------aGGGAGGGGGACATCAGGGAGAGAAATTAAGGT--ACGAAGGGAGTAAAAGGACAAGAGAAAGAAGAACCTCCAGGTGG-TTAGAAGCCAATGTTATCTAATGTACTCCAGCAGGGCCTAGCAAACAGTATTTCTTGACCAAGGGCAAACTGGAAGCTCTAAAGAC--AGCAG----GTACAG---ACCTTTCTGACGGCTC-CAGAAGCTCTTGGCTATACCTTGAAgtggaggg---------------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29010697 393 -  71996105 GTGGGGGAGGGGG-GCTGAGGGCCACTTAAGCGCGAGAAGTGTTGGGTATAGAAAAGATTTCTGGGAGACTAGAGCAGCTCCATGGTCCAGCAGCATTGCTACTCGCCTGCT--CTGC-AGGGAACGCGCAGAACGGATTGGAGGCaaaaaaaa-------------aaaaaaaaaaaaaa--------aaaaGA------------------AGGGAGGGGGACATCAAGGAGAGAAATTAAGGT--ACGAAGGGAGTAAAAGGACAAGAGAAAGAAGAACCTCCAGGTGG-TTAGAAGCCAATATTATCTAATGTACTCCAGCAGGGCCTACCAAACAGTATTTCTTGACCAAGGGCAAACTGGAAGCTCTAAAGAC--AGCAG----GTACAG---ACCTTTCTGACGGCTC-CAGGAGCTCTTGGCTATACCTTGAAATGGAGGG---------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     186937 389 +    290775 GTGGGGGAGGGGG-GCTGAGGGCCACTTAAGCGCGAGAAGTGTTGGGTATAGAAAAGATTTCTGGGAGACTAGAGCAGCTCCATGGTCCAGCAGGATTGCTACTCGCCTGCT--CTGC-AGGGAACGCGCAGAACGGATTGGAGGCACaaaaaa-------------aaaaaaaaaaaaaa--------a----a------------------aGGGAGGGGGACATCAGGGAGAGAAATTAAGGT--ACGAAGGGAGTAAAAGGACAAGAGAAAGAAGAACCTCCAGGTGG-TTAGAAGCCAATGTTATCTAATGTACTCCAGCAGGGCCTAGCAAACAGTATTTCTTGACCAAGGGCAAACTGGAAGCTCTAAAGAC--AGCAG----GTACAG---ACCTTTCTGACGGCTC-CAGAAGCTCTTGGCTATACCTTGAAgtggaggg---------------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2645665 407 -   3067355 GTGGGGGAGGGGG-GCTGAGGGCCACTTAAGCGCGAGAAGTGTTGGGTATAGAAAAGATTTCTGGGAGACTAGAGCAGCTCCATGGTCCAGCAGCATTGCTACTCGCCTGCT--CTGC-AGGGAACGCGCAGAACGGATTGGAGGCaaaaaaaa-------------aaaaagaaaaagaa--------a----aagaaaagaaaagaaaaaCAGGGAGGGGGACATCAAGGAGAGAAATTAAGGT--ACGAAGGGAGTAAAAGGACAAGAGAAAGAAGAACCTCCGGGTGG-TTAGAAGCCAATATTATCTAATGTACTCCAGCAGGGCCTAGCAAACAGTATTTCTTGACCAAGGGCAAACTGGAAGCTCTAAAGAC--AGCAG----GAACAG---ACCTTTCTGACGGCTC-CAGAAGCTCTTGGCTATACCTTGAAGTGGAGGG---------------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       7431 414 +    132061 GTGGGGAAGCGGGTACTGAGGGCCACCTAAGCGCGAGAAGGGTTGGGTGTAGAAGAGATTTCTGGAAGACTAGAGCAGCTCCATGGTCCAGCAGCATTGCTGCTCGCCTGCT--GTGC-AGGGAACGCGCAGAACGGATTGGAGGCaaagaaag-------aaagaaagaaaaaaaaaaaa--------a----a------------------agGGAGGGGAACATCAAGGAGAGAAATTGAAGT--ACGAAGGGAGTAAAAGGACTGGAGAAAAAAGAAGCTTGAGGTAG-TTAGGAGTGAGTACTGCCTTCTGTACTGCAGCAGGGCCTAGCAAACAGTATTTCTTGACCAAGGGCAAACTGGAAGCGCTAAAGAC--AGCAG----GTACAGGCGGCCTTTTTGAGGGCTC-CAGAAGCTCTTGGCTATACCTTGAAGTGGAGGAGGTtgtgtgagagtg
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           234426 410 -    242197 GTGGGGAAGGGGGTACTGAGGGCCACCTAAGCGCGAGAAGGGTTGGGTATAGAAGAGATTTCCGGGAGACTAGAGTAGCTCCATGGTCCAGCAGCATTGCTGCTCGCCTGCT--CTGC-AGGTAACGCACAGAAAGGATTGGAGGCaaaaaatt-------------------aaaaaaaatttttttta----a------------------aGGGAGGGGGACATCAAGGAGAGAAATTAAGGT--AGGAAGGGAGTAAAAGGACATGAGAAAAAAGAACCTCCAGGTAG-TTAGGAGCCAGTAGTATCTTCCGTACTCCAGCAGGGCCTAGCAAACAGTATTTCTTGACCAAGGGCAAACTGGAAGCGCTAAAGAC--AGTAG----GTACAGGCCGCCTTTTTGAAGGCTC-CAGAAGCTCTCGGCTATACCTTTAAGTGGAGGAGGgtgtgtgtgtgtg
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     228082 394 -   1771730 GTGGGGAAGAAGGTACTGAGGGCCACCTACGCGCGAGAAGGGTTGGGTGTAGAAGAGATTTCTGGGAGACTAGAGCAGCTCCATGGTCCAGCAGCATTGCTGCTCGCCTGCT--CTGC-AGGGAGCGCGCAGAACGGGTTGGAGGCA--------------------------AAAAAAAA--------A----A------------------AAGGAGGGGAATATCAAGTAGAGAAATTGAGAT--ACGAAGGG-GTAAAAGGACAAGAGGAAAAAGGACCTCCAGGTAG-TTAGGAGCCATTACTGTCTTCCGTATTCCAGCAGGGCCTAGCAAACAGTATTTCTTGACCAAGGGCAAACTGGAAGCGCTAAAGAC--AGCAG----GTACAGGCGGCCTTTTTGAAGGCTC-CAGAAGCTGTTGGCTATACCTTGAAGTGGAGGAGGgtgtgtgtgtgtg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     310079 422 -    457564 GTGGGGAAGCGGGTACTGAGGGCCACCTAAGCGCGAGAAGGTTTGGGTGGAGAAGAGATTTCTGGGAGACTAGAGCAGCTCCATGGTCCAGCAGCATTGCTGCTCGCCTGCT--CTGCAAGGGAACGCACAGATCGGATTGGAGGCaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa--------a----a------------------aGGGAGGGGGGCATCAAGGAGAGAAATTGAGGT--ACGAAGTGAGTAAAAGGACAAGAGAAAAAAGAACCTCCAGGTAG-TTAGGAGCCAGTACTATCTTCTGTACTCCAGCAGGGCCTAGCAAACAGTATTTCTTGACCAAGGGCAAACTGGAAGCTCTAAAGAC--AGCAG----GTAAAGGCGGCCTTTTTGAAGGCTC-CAGAAGCTCTTGGCTATACCTTGAAGTGGAGGAGGTtgtgtgtgtgtg
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           121705 346 +  18854210 GTGGAGGCGGGGATGCTGAGAGGTGCCTAAATGCGAGAAGACTTGGGTGAAGAGAG-----CTGGGAGATCAGAGTGGTTCCACGGTCCAGCAGCGTTGGTACTCGCCAATT--CGCC-AGGGAACGTGCACAACCGACTGGAAGC------------------------------AAAAG--------A----C------------------CAGGAGAGGGTCATCAAGGAGAGAA----------AGGAAGGGTGGAAAATGGCAAGAGAAAGAAAA----------GA-TC---AGCCAGCTTTATCTTGCGTACTTCAGCAGGCCTTAGAAAACAATGTTTTTTGACTGAGGACGAACTGGAAGCTCTAACGAC--AGCAA----ATGCAG---GTCTTT-TGAGAGCTT-CAGAAGCTCATGGATGTGTCTGACATCAACGGG---------------
i otoGar3.GL873550         I 17 C 0
s mm10.chr17               57941697 290 -  94987271 ATGGTGGAGGGAGCACTAGG---------------AGAAAAATAGGATAGAAGAGCTAGAACTGGGAGCCCCGGGTGGCTCGTTAGTCCAGCAGTA-GGCTACTTGCCAGCTTATGGC-GGGGAGC---------------------------------------------------------------A----A------------------GAGATCAGGGGCATCA-GAAGAGATACTGAGGTAGATGGAGAAAG-GAGAGGGCATAAAGAAAGAAAACCTCTACGTGA-GCATGAGCCTGTATTATCAA---CACTCGGACCAGACCTGCCA--------TTCTTGACTAAGGGTAAACTGGAGGCCCTGA------------------CAG---AGAAGTCTGACAGCC----AAAGCTCCTGCAT---------------------------------
i mm10.chr17               I 5 C 0
s dasNov3.JH582591            49619 314 +    102524 ------gggCGGG-GCCGGGAGCCACC---GCG-GAGGAGAGCTGGA---------------------GCCCGAGCGGCTCCGG------------------------------GTGG-GGGGAGCACAGAGAGGGGACTGGAAGC--------------------------------AAA--------A----A------------------GGGGAGGGGGACATCAGGGAGAGAAATTGAGGC--AGACGGGGGGCG---------GCGAGAGAACAGCTCCCAGGTGG-GCAGAAACCCGTGTGATGGGCTACGCTCCAATAGGGCCGAA-AATGACTATTTCTTGACCAACCA-GAACTGCAAGCTCTAGAGACGAAGCCGGGCAGTGCAG---ACCCTT-TGACAGCTCGCGGAGGCCCCTGGCCACTGCCCGAG-----GGG--CTGTGTGTGTGTG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e proCoq1.NW_012152574v1     607590 467 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I

a score=544133.000000
s hg38.chr6_GL000254v2_alt   899374  87 +   4827813 tgtgtgtgtgtgtgtgt-------------------------------gtgtgtgtgtgttgtgctgttgt-tgttCGTAGGCCTGAGTTTGGGCTGGGAGAGGAAACAGTGGGCTCCT
s panTro5.chr6             29862148  87 + 175400573 tgtgtgtgtgtgtgtgt-------------------------------gtgtgtgtgtgttgtgctgttgt-tgttCGCAGGCCTGAGTTTGGGCTGGGAGAGGAAACAGTGGGCTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30096508  87 + 173848474 tgtgtgtgtgtgtgtgt-------------------------------gtgtgtgtgtgttgtgctgttgt-tgttCGCAGGCCTGAGTTTGGGCTGGGAGAGGAAACAGTGGGCTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5903133  87 +   6154872 tgtgtgtgtgtgtgtgt-------------------------------gtgtgtgtgtgttgtgctgttgt-tgttCGCAGGCCTGAGTTTAGGCTGGGAGAGGAAACAGTGGGCTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30092682  70 + 172585720 ------------------------------------------------GTGTGTGTGTGGTGTGGTGGTGT-TGTTCGTAGGCCTGAGTTTGGGCTGGGAGAGGAAACAGTGGGCTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29756398  70 - 170955103 ------------------------------------------------GTGTGTGTGTGGTGTGGTATTGT-TGTTCGTAGGCCTGAGTTTGGGCTGGGAGAGGAAACAGTGGGCTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2803917  70 -   2996164 ------------------------------------------------GTGTGTGTGTGGTGTGGTATTGT-TGTTCGTAGGCCTGAGTTTGGGCTGGGAGAGGAAACAGTGGGCTCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     555008  70 +    766320 ------------------------------------------------gtgtgtgtgtggtgtggtggtgg-tgTTCGTAGGCCTGAGTTCGGGCTGGGAGAGGAAACAGTGGGCTCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29011090  70 -  71996105 ------------------------------------------------GGGTGTGTGTGGTGTGTTGGTGT-TGTTCGTAGGCCTGAGTTTGGGCTGGGAGAGGAAACAGTGGGCTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     187326  70 +    290775 ------------------------------------------------gtgtgtgtgtggtgtggtggtgg-tgTTCGTAGGCCTGAGTTTGGGCTGGGAGAGGAAACAGTGGGCTCCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2646072  70 -   3067355 ------------------------------------------------GTGTGTGTGTGGTGTGTTGTTGT-TGTTCGTAGGCCTGAGTTTGGGCTGGGAGAGGAAACAGTGGGCTCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       7845  96 +    132061 tgtgtgtgtgtgtgtgtgtgtgtg---------------------gtgttgtgtgtgtgctgtg-tgtTGT-TGTTCATGGGCCTGAGTTTGGACTGGGAGAGGAAACAGTGGGCTCCT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           234836 104 -    242197 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-------------gtgtgttgtgtgtgtactgtg-tgGTGT-TGTTCATGGGCCTGAGTTTGGGCTGGGAGAGGAAACAGTGGGCTCCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     228476 117 -   1771730 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtatgtggtgtgtgtgttgtgtgtgtgctgtg-tgtTGT-TGTTCATGGGCCTGAGTTTGGGCTGAGAGAGGAAACAGTGGGCTCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     310501  69 -    457564 t-----------------------------------------------ttgtgtgtgtgctgtg-tgttgt-tgtTCATGGG-CTGAGTTTGGGCTGGAAGAGGAAACAGTGGGCTCCT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           122051  53 +  18854210 --------------------------------------------------GTCTGTGTGTTGTT-TAATGT-T--------------AATTGGACTGGGAGAGAAAATATGAGGGTCCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57941987  48 -  94987271 --------------------------------------------------------------TGCGATTGTCTGTCCATA-ACTTGA---TGGACAGAAAGATGAAAAAGGGAG-----
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            49933  44 +    102524 --------------------------------------------------------------------------TGAGGGGGCAGGAGTTTGG-CTGGGAAAGGAGACAGGGACCCCCt
i dasNov3.JH582591         C 0 I 1487
e micMur3.chr6               112883 2770 + 123392446 I
e proCoq1.NW_012152574v1     607590 467 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e nomLeu3.chr1a            74607308 905 + 122973662 M

a score=41660.000000
s hg38.chr6_GL000254v2_alt   899461 13 +   4827813 TGTT--G-GGGGGGAC
s panTro5.chr6             29862235 15 + 175400573 TGTTGGG-GGGGGGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30096595 13 + 173848474 TGTT--G-GGGGGGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5903220 13 +   6154872 TGTT--G-GGGGGACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30092752 14 + 172585720 TCTT--GCGGAGGGAC
i rheMac8.chr4             C 0 I 5
s macFas5.chr4             29756468 14 - 170955103 TCTT--GCGGAGGGAC
i macFas5.chr4             C 0 I 5
s macNem1.NW_012011356v1    2803987 14 -   2996164 TCTT--GCGGAGGGAC
i macNem1.NW_012011356v1   C 0 I 2
s cerAty1.NW_012002711v1     555078 14 +    766320 TCTT--GCGGAGGGAC
i cerAty1.NW_012002711v1   C 0 I 2
s chlSab2.chr17            29011160 14 -  71996105 TCTT--GCGGAGGGAC
i chlSab2.chr17            C 0 I 5
s manLeu1.NW_012099233v1     187396 14 +    290775 TCTT--GCGGAGGGAC
i manLeu1.NW_012099233v1   C 0 I 5
s colAng1.NW_012115566v1    2646142 14 -   3067355 TCTT--GCGGAGGGAC
i colAng1.NW_012115566v1   C 0 I 5
s calJac3.chrUn_GL286223       7941 12 +    132061 TCTT--G-GGAGGAC-
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           234940 12 -    242197 TCTT--G-GGAGGAC-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     228593 12 -   1771730 TCTT--G-GGAGGAC-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     310570 12 -    457564 TCTT--G-GGAGGAC-
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           122104 13 +  18854210 TCTT--GGGGAAAAA-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57942035 13 -  94987271 TGTG--GCGGGGGCT-
i mm10.chr17               C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     607590 467 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e nomLeu3.chr1a            74607308 905 + 122973662 M

a score=30473.000000
s hg38.chr6_GL000254v2_alt   899474 4 +   4827813 A-AAA
s panTro5.chr6             29862250 5 + 175400573 AGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30096608 4 + 173848474 A-AAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5903233 4 +   6154872 A-AAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74608242 4 + 122973662 A-AAA
i nomLeu3.chr1a            M 905 C 0
s rheMac8.chr4             30092771 4 + 172585720 a-aaa
i rheMac8.chr4             I 5 C 0
s macFas5.chr4             29756487 4 - 170955103 a-aaa
i macFas5.chr4             I 5 C 0
s macNem1.NW_012011356v1    2804003 4 -   2996164 A-AAA
i macNem1.NW_012011356v1   I 2 C 0
s cerAty1.NW_012002711v1     555094 4 +    766320 A-AAA
i cerAty1.NW_012002711v1   I 2 C 0
s chlSab2.chr17            29011179 4 -  71996105 a-aaa
i chlSab2.chr17            I 5 C 0
s manLeu1.NW_012099233v1     187415 4 +    290775 A-AAA
i manLeu1.NW_012099233v1   I 5 C 0
s colAng1.NW_012115566v1    2646161 4 -   3067355 A-AAA
i colAng1.NW_012115566v1   I 5 C 0
s calJac3.chrUn_GL286223       7953 4 +    132061 A-AAA
i calJac3.chrUn_GL286223   C 0 I 2
s saiBol1.JH378357           234952 4 -    242197 A-AAA
i saiBol1.JH378357         C 0 I 3484
s cebCap1.NW_016107755v1     228605 4 -   1771730 A-AAA
i cebCap1.NW_016107755v1   C 0 I 3
s aotNan1.NW_018509740v1     310582 4 -    457564 C-AAA
i aotNan1.NW_018509740v1   C 0 I 2
s otoGar3.GL873550           122117 4 +  18854210 A-AAA
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57942048 4 -  94987271 -GGGG
i mm10.chr17               C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     607590 467 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I

a score=244680.000000
s hg38.chr6_GL000254v2_alt   899478 37 +   4827813 AAAAA------------------------GCTGCTTT-CTGGCTGGTCC--TA-GGGGGAAAAAT
s panTro5.chr6             29862255 36 + 175400573 AAAAA------------------------GCTGCTTT-CTGGCTGGTCC--T--GGGGGAAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30096612 36 + 173848474 AAAAA------------------------GCTGCTTT-CTGGCTGGTCC--T--GGGGGAAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5903237 37 +   6154872 AAAAA------------------------GCTGCTTT-CTGGCTGGTCC--TA-GGGGGAAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74608246 38 + 122973662 AAAAA------------------------GCTGCTTT-CTGGCTGGTCC--TAGGGGGAAAAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30092775 43 + 172585720 aaaaaaaaaa-------------------GCTTCTTT-CTGACTGGTCC--TAGGGGGAAAAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29756491 43 - 170955103 aaaaaaaaaa-------------------GCTTCTTT-CTGACTGGTCC--TAGGGGGAAAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2804007 43 -   2996164 AAAAAAAAAA-------------------GCTTCTTT-CTGACTGGTCC--TAGGGGGAAAAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     555098 43 +    766320 AAAAAAAAAA-------------------GCTTCTTT-CTGACTGGTCC--TAGGGGGAAAAAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29011183 62 -  71996105 aaaaaaaaaaaaaaaaaaaaaaaaaaaaGGCTTCTTT-CTGACTGGTCC--TAGGGGGAAAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     187419 38 +    290775 AAAAA------------------------GCTTCTTT-CTGACTGGTCC--TAGGGGGAAAAAAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2646165 35 -   3067355 AAAAA------------------------G---CTTT-CTGACCGGTCC--TAGGGGGAAAAAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       7959 37 +    132061 AAAAA------------------------GCTTCTTT-CTGGCTGGCCC--TGGGGGGAG-AAAC
i calJac3.chrUn_GL286223   I 2 C 0
s cebCap1.NW_016107755v1     228612 38 -   1771730 AAAAA------------------------GCTGCTTT-CTGGCTGGCCC--TGGGGGGAGAAAAC
i cebCap1.NW_016107755v1   I 3 C 0
s aotNan1.NW_018509740v1     310588 39 -    457564 AAAAA------------------------GCTGCTTT-CTGGCTGGCCCTTTGGGGGGAA-AAAC
i aotNan1.NW_018509740v1   I 2 C 0
s otoGar3.GL873550           122122 33 +  18854210 AAAAA------------------------GCAGCATT-CCAGGTGGTCC--T----GGATAAAA-
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57942052 34 -  94987271 GAGGC------------------------ACTCCTTTGCTGGCTAGTTC--TTCCAGAGA-----
i mm10.chr17               C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     607590 467 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I

a score=910357.000000
s hg38.chr6_GL000254v2_alt   899515 77 +   4827813 GGTAGGAAGAAACCAAACACTGAGAGACTGACTAGAATTGAgattctcaacctccaacccttttttacaataaatat
s panTro5.chr6             29862291 77 + 175400573 GGTAGGAAGAAACCAAACACTGACAGACTGACTAGAATTGAgattctcaacctccaacccttttttacaataaatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30096648 77 + 173848474 GGTAGGAAGAAACCAAACACTGACAGACTGACTAGAATTGAgattctcaacctccaacccttttttacaataaatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5903274 77 +   6154872 GGTAGGAAGAAACCAAACACTGAGAGACTGACTAGAATTGAgattctcaacctccaacccttttttacaataaatat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74608284 76 + 122973662 GGTAGGAAGAAACCAAACACTGAGAGACTGACTAGAATTGAGATTCT-AACCTccaacccttttttacaataaatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30092818 77 + 172585720 GGTAGGAAGAAACCAAACACTGAGAGACTGACTAGAATTGAggctctcaaccttcaactcttttttacaataaatat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29756534 77 - 170955103 GGTAGGAAGAAACCAAACACTGACAGACTGACTAGAATTGAggctctcaaccttcaactcttttttacaataaatat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2804050 77 -   2996164 GGTAGGAAGAAACCAAACACTGAGAGACTGACTAGAATTGAggctctcaaccttcaactcttttttacaataaatat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     555141 77 +    766320 GGTAGGAAGAAACCAAACACTGAGAGACTGACTAGAATTGAggctctcaaccttcaactcttttttacaataaatat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29011245 77 -  71996105 GGTAGGAAGAAACCAAACACTGAGAGACTGACTAGAATTGAGACTCTCAACCTTCAActcttttttacaataaatat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     187457 77 +    290775 GGTAGGAAGAAACCAAACACTGAGAGACTGACTAGAATTGAggctctcaaccttcaactcttttttacaataaatat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2646200 77 -   3067355 GGTAGGAAGAAACCAAACACTGAGAGACTGACTAGAATTGAGACtctcaaccttcaactcttttttacaataaatat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       7996 77 +    132061 GGTAGGAAGAAACCAAACACTGAGAGACTGACTAGAATTTAGACCCTCAACCTTCAACTCTTTTTTACTATAAATAT
i calJac3.chrUn_GL286223   C 0 I 1
s cebCap1.NW_016107755v1     228650 77 -   1771730 GGTAGGAAGAAACCAAACACTGAGAGACTGACTAGAATTTAGACTCTTAACCTTCAACTCTTTTTTATGATAAATAT
i cebCap1.NW_016107755v1   C 0 I 2789
s aotNan1.NW_018509740v1     310627 77 -    457564 GGTAGGAAGAAACCAAACACTGAGAGACTGACTAGAATTTAGACtctcaaccttcaacttttttttacgataaatat
i aotNan1.NW_018509740v1   C 0 I 1
s proCoq1.NW_012152574v1     608057 77 +    730504 GGTAGGTAGAAGCCAAATACTGGGAGACTGACTAGAACTGAggttctcaaccttcgaccttctcttataatagatat
i proCoq1.NW_012152574v1   I 467 C 0
s otoGar3.GL873550           122155 77 +  18854210 GGTAGGAAGAAAACAAATATTATGAGACTGACTAGAACCGAggttctcaaccttcaacctttttttaagagaaatat
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57942086 76 -  94987271 GGTGGGTGGAAAGCAGGTATTATGAGACCCAGGAGAACCAAggctctcaaccttcaaccctatgttagaacaagta-
i mm10.chr17               C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e dasNov3.JH582591            49977 1487 +    102524 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I

a score=43583.000000
s hg38.chr6_GL000254v2_alt   899592 4 +   4827813 tttg
s panTro5.chr6             29862368 4 + 175400573 tttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30096725 4 + 173848474 tttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5903351 4 +   6154872 tttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74608360 4 + 122973662 tttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30092895 4 + 172585720 tttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29756611 4 - 170955103 tttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2804127 4 -   2996164 tttg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     555218 4 +    766320 tttg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29011322 4 -  71996105 tttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     187534 4 +    290775 tttg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2646277 4 -   3067355 tttg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223       8074 3 +    132061 -TTG
i calJac3.chrUn_GL286223   I 1 I 3491
s aotNan1.NW_018509740v1     310705 3 -    457564 -ttt
i aotNan1.NW_018509740v1   I 1 C 0
s proCoq1.NW_012152574v1     608134 4 +    730504 tttg
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           122232 4 +  18854210 tttg
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57942162 4 -  94987271 tttg
i mm10.chr17               C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e dasNov3.JH582591            49977 1487 +    102524 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e cebCap1.NW_016107755v1     228727 2789 -   1771730 I

a score=272341.000000
s hg38.chr6_GL000254v2_alt   899596 30 +   4827813 taatgacacttttactgtcctaaattgaga
s panTro5.chr6             29862372 30 + 175400573 taatgacacttttactgtcctaaattgaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30096729 30 + 173848474 taatgacacttttactgtcctaaattgaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5903355 30 +   6154872 taatgacacttttactgtcctaaattgaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74608364 30 + 122973662 taatgacacttttactgtcctaaattgaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30092899 30 + 172585720 taatgacacttttactgtcctaaattgaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29756615 30 - 170955103 taatgacacttttactgtcctaaattgaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2804131 30 -   2996164 taatgacacttttactgtcctaaattgaga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     555222 30 +    766320 taatgacacttttactgtcctaaattgaga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29011326 30 -  71996105 taatgacacttttactgtcctaaattgaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     187538 30 +    290775 taatgacacttttactgtcctaaattgaga
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2646281 30 -   3067355 taatgacacttttactgtcctaaattgaga
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     310708 30 -    457564 taatgacacttttactgtcctaaattgaaa
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     608138 30 +    730504 tgatgacccctttactatcctgaattaaaa
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           122236 30 +  18854210 tgatgacccctctaatatcctgaattaaaa
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57942166 20 -  94987271 taatgac----------tcctaaaccacga
i mm10.chr17               C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e dasNov3.JH582591            49977 1487 +    102524 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e cebCap1.NW_016107755v1     228727 2789 -   1771730 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I

a score=98224.000000
s hg38.chr6_GL000254v2_alt   899626 11 +   4827813 ttcatagatga
s panTro5.chr6             29862402 11 + 175400573 ttcatagatga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30096759 11 + 173848474 ttcatagatga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5903385 11 +   6154872 ttcatagatga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74608394 11 + 122973662 ttcatagatga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30092929 11 + 172585720 ttcatagatga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29756645 11 - 170955103 ttcatagatga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2804161 11 -   2996164 ttcatagatga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     555252 11 +    766320 ttcatagatga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29011356 11 -  71996105 ttcatagatga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     187568 11 +    290775 ttcatagatga
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2646311 11 -   3067355 ttcatggatga
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     310738 11 -    457564 ttcatagataa
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     608168 11 +    730504 ttcataaatga
i proCoq1.NW_012152574v1   C 0 I 1471
s otoGar3.GL873550           122266 11 +  18854210 ttcatcaatga
i otoGar3.GL873550         C 0 I 56
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942186  0 -  94987271 C
e dasNov3.JH582591            49977 1487 +    102524 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e cebCap1.NW_016107755v1     228727 2789 -   1771730 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I

a score=672086.000000
s hg38.chr6_GL000254v2_alt   899637 109 +   4827813 ggctcacgcctgaaatcccagaactttgggaggccgaggcggactgatcacttgagctcaggagtttgagaccagcctggcctggccagcatggcgaaaccccatctct
s panTro5.chr6             29862413 109 + 175400573 ggctcacgcctgaaatcccagaactttgggaggccgaggcggaccgatcacttgagctcaggagtttgagaccagcctggcctggccagcatggcgaaaccccatctct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30096770 109 + 173848474 ggctcacgcctgaaatcccagaactttgggaggccgaggcggaccgatcacttgagctcaggagtttgagaccagcctggcctggccagcatggcgaaaccccatctct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5903396 109 +   6154872 ggctcacgcctgaaatcccagaactttgggaggccgaggcggaccgatcacttgagctcaggagtttgagaccagcctggcctggccagcatggtgaaaccccatctct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74608405 109 + 122973662 ggctcacgcctgtaatcccagaactttgggaggccaaggcagaccgatcactttagctcaggagtttgagaccagcctggcctggccagcatggcgaaaccccatctct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30092940  95 + 172585720 ggctcacgcctgtaatcccaggactttgggaggccaaggcggaccaatcacttgagctcaggagtttgaga--------------ccagcatggcgaaatcccatctct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29756656  95 - 170955103 ggctcacgcctgtaatcccaggactttgggaggccaaggcggaccaatcacttgagctcaggagtttgaga--------------ccagcatggcgaaatcccatctct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2804172  95 -   2996164 ggctcacgcctgtaatcccaggactttgggaggccaaggcggaccaatcacttgagctcaggagtttgaga--------------ccagcatggcgaaatcccatctct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     555263 109 +    766320 ggctcacgcctgtaatcccaggactttgggaggccaaggcggaccaatcacttgagctcaggagtttgagaccagcctggcctgcccagcatggcgaaatcccatctct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29011367 109 -  71996105 ggctcacgcctgtaatcccaggactttgggaggccgaggcggaccaatcacttgagctcaggagtttgagaccagcctggcctggccagcatggcgaaatcccatctct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     187579 109 +    290775 ggctcacgcctgtaatcccaggactttgggaggccaaggcggaccaatcacttgagctcaggagtttgagaccagcctggcctgcccagcatggcgaaatcccatctct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2646322 109 -   3067355 ggctcacgcctgtaatcccaggactttgggaggccgaggcggaccaatcacttgagctcaggagtttgagaccagcctggcctggccagcatggcgaaatcccatctct
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     310749 103 -    457564 ggctcacccctgtaatcctagctctttgggaaaccaaggcaggccgatcacttgagctcgggggttagagaccagcctggcctg------atggtgaaaccctgtctct
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942186   0 -  94987271 C
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e otoGar3.GL873550           122277  56 +  18854210 I
e cebCap1.NW_016107755v1     228727 2789 -   1771730 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I

a score=1314396.000000
s hg38.chr6_GL000254v2_alt   899746 215 +   4827813 actaaaaatagaaaaattagcgtggtgtgatggtgtgcgcctgtaatcccagctgagacaccagaatcgcttgaacccgggaggcagaggttgcagtgagccaagatcgcaccactgcactccagcctgggtgacagagcaagactccatctc-------aaacaaaaagaaagggaaggagggagaga-------------------------------aagtcatagatgatataacctacctacat--------------acac
s panTro5.chr6             29862522 215 + 175400573 actaaaaatagaaaaattagcgtggtgtgatggtgtgcgcctgtaatcccagctgagacaccagaatcgcttgaacccgggaggcggaggttgcagtgagccaagatcgcactactgcactccaacctgggtgacagagcaacactccatctc-------aaacaaaaagaaagggaaggagggagaga-------------------------------aagtcatagatggtataacctacctacat--------------acac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30096879 215 + 173848474 actaaaaatagaaaaattagcgtggtgtgatggtgtgcgcccgtaatcccagctgagacaccagaatcgcttgaacccgggaggcggaggttgcagtgagccaagatcgcactactgcactccaacctgggtgacagagcaacactccatctc-------aaacaaaaagaaagggaaggagggagaga-------------------------------aagtcatagatgatataacctacctacat--------------acac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5903505 215 +   6154872 actaaaaatagaaaaattagcgtggtgtgatggtgtgcgcctgtaatcccagctgagacaccagaatcgcttgaacccgggaggcggaggttgcagtgagccaagatcgcactactgcactccaacctgggtgacagagcaagactccatctc-------aaacaaaaagaaagggaaggagggagaga-------------------------------aagtcatagatgatataacctacctacat--------------acac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74608514 214 + 122973662 actaaaaatagaaaaattagcctggcgtggtggtgtgcgcctgtaatcccagctaagacaccagaatcgcttgaacctgggaggcagaggttgcagtgagccaagatcgcaccactgcactccaacctgggtgacagagcaagactccatctc-------aaa-aaaaagaaagggaaggagggagaga-------------------------------aagtcatagatgatataacctacctacat--------------acac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30093035 232 + 172585720 actaaaaatagaaaaattagtctggcgtggtggtgtgcgcctgtaatcccagctgagacaccagaatcacttgaatccaggaagcagaggttgcagtgagccaagatcgcgccactgcactccaatctgggtgacagagcgagactccatctc-aa---aaaagagaaagaaagggagggagggagaga-------------------------------aagtcatagatgatataacctacctacatacacacacacacacacac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29756751 232 - 170955103 actaaaaatagaaaaattagtctggcgtggtggtgtgcgcctgtaatcccagctgagacaccagaatcacttgaatccaggaagcagaggttgcagtgagccaagatcgcgccactgcactccaatctgggtgacagagcgagactccatctc-aa---aaaagagaaagaaagggagggagggagaga-------------------------------aagtcatagatgatataacctacctacatacacacacacacacacac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2804267 228 -   2996164 actaaaaatagaaaaattagtctggcgtggtggtgtgcgcctgtaatcccagctgagacaccagaatcacttgaatccaggaagcagaggttgcagtgagccaagatcgcgccattgcactccaatctggatgacagagcgagactccatctc-aa---aaaagagaaagaaagggagggagggagaga-------------------------------aagtcatagatgatataacctacctacat----acacacacacacac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     555372 219 +    766320 actaaaaatagaaaaattagtctggcgtggtggtgtgtgcctgtaatcccagctgagacaccagaatcacttgaacccgggaagcagaggttgcagtgagccaagatcgcgccactgcactccaatctgggtgacagagcgagactccatctcaaa---aaaagagaaagaaagggagggagggagaga-------------------------------aagtcatagatgatataacctacctacat--------------acac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29011476 219 -  71996105 actaaaaatagaaaaattagtctggcgtggtggtgtgcgcctgtaatcccagctgagacaccagaatcacttgaacccgggaagcagaggttgcagtgagccaagatcgcgccactgcactccaacctaggtgacagagcgagactccatctcaaa---agaagagaaagaaagggagggagggagaga-------------------------------aagtcatagatgatataaccaacctacat--------------acac
i chlSab2.chr17            C 0 I 22
s manLeu1.NW_012099233v1     187688 219 +    290775 actaaaaatagaaaaattagtctggcgtggtggtgtgtgcctgtaatcccagctgagacaccagaatcacttgaacccgggaagcagaggttgcagtgagccaagatcgcgccactgcactccaatctgggtgacagagcgagactccatctcaaa---aaaagagaaagaaagggagggagggagaga-------------------------------aagtcatagatgatataacctacctacat--------------acac
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2646431 219 -   3067355 actaaaaacagaaaaattagtctggcgtggtggtgtgcgcctgtaatcccagctgagacacctgaatcgcttgaacccaggaagcagaggttgcagtgagccaagatcgcaccattgcactccaacctgggtgacagagcaagactccatctcaaa---aaaagagaaagaaagggagggagggagaga-------------------------------aagtcatagatgatataacctacctacat--------------acac
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     310852 253 -    457564 actaaaaataaaaaaattagcttggtatggtggtgtgcacctgtaatcccagttgagacaccaaaatcgcttgaacccgggaggcagaggttgcagtgaaccaagatcacgccactgcactccagcctgggtgacagagcaagactctgtctcaaaaacaggaaagaaagaaagagagagagagagagagaggagggaggaagggagggaagaaggAAggaagtcatagatgatataacctacctatat--------------atac
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57942186  38 -  94987271 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------actaa-------------------------------taatcatagattacatcacttccctatgc--------------acgt
i mm10.chr17               C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e otoGar3.GL873550           122277  56 +  18854210 I
e cebCap1.NW_016107755v1     228727 2789 -   1771730 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I

a score=-5360.000000
s hg38.chr6_GL000254v2_alt   899961 11 +   4827813 aactt---taaaca
s panTro5.chr6             29862737 11 + 175400573 aactt---taaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30097094 11 + 173848474 aactt---taaaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5903720 11 +   6154872 aactt---taaaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74608728 14 + 122973662 aacttaaaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30093267  9 + 172585720 -----acacacaca
i rheMac8.chr4             C 0 I 2
s macFas5.chr4             29756983  9 - 170955103 -----acacacaca
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1    2804495  9 -   2996164 -----acacacaca
i macNem1.NW_012011356v1   C 0 I 2
s cerAty1.NW_012002711v1     555591  9 +    766320 -----acacacaca
i cerAty1.NW_012002711v1   C 0 I 2
s manLeu1.NW_012099233v1     187907  9 +    290775 -----acacacaca
i manLeu1.NW_012099233v1   C 0 I 3
s colAng1.NW_012115566v1    2646650  9 -   3067355 -----acacacaca
i colAng1.NW_012115566v1   C 0 I 11
s aotNan1.NW_018509740v1     311105 10 -    457564 aacttaaaaa----
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57942224  7 -  94987271 -----gactaaa--
i mm10.chr17               C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e otoGar3.GL873550           122277 56 +  18854210 I
e cebCap1.NW_016107755v1     228727 2789 -   1771730 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I
e chlSab2.chr17            29011695 22 -  71996105 I

a score=240074.000000
s hg38.chr6_GL000254v2_alt   899972 34 +   4827813 gaaagcaaaatgcttccctttctgtaacgtaaag
s panTro5.chr6             29862748 34 + 175400573 gaaagcaaaatgcttccctttctgtaacgtaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30097105 34 + 173848474 gaaagcaaaatgcttccctttctgtaacgtaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5903731 34 +   6154872 gaaagcaaaatgcttccctttctgtaacgtaaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74608742 34 + 122973662 aaaagcaaaatgcttccctttctgtaacgtaaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30093278 28 + 172585720 -aaagcaaaatgcttccctttc-----tgtaaag
i rheMac8.chr4             I 2 C 0
s macFas5.chr4             29756994 33 - 170955103 -aaagcaaaatgcttccctttctgtaatgtaaag
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1    2804506 33 -   2996164 -aaagcaaaatgcttccctttctgtaatgtaaag
i macNem1.NW_012011356v1   I 2 C 0
s cerAty1.NW_012002711v1     555602 33 +    766320 -aaagcaaaatgcttccctttctgtaatgtaaag
i cerAty1.NW_012002711v1   I 2 C 0
s chlSab2.chr17            29011717 34 -  71996105 aaaagcaaaatgcttccctttctgtaatgtaaag
i chlSab2.chr17            I 22 C 0
s manLeu1.NW_012099233v1     187919 34 +    290775 aaaagcaaaatgcttccctttctgtaatgtaaag
i manLeu1.NW_012099233v1   I 3 C 0
s colAng1.NW_012115566v1    2646670 34 -   3067355 aaaagcaaaatgcttccctttctgtaatgtaaag
i colAng1.NW_012115566v1   I 11 C 0
s aotNan1.NW_018509740v1     311115 34 -    457564 aaaagcaaaatgcttccctttctgtaatgtaaag
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57942231 31 -  94987271 aagaacaaaatatttccccatctataa---gaag
i mm10.chr17               C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e otoGar3.GL873550           122277 56 +  18854210 I
e cebCap1.NW_016107755v1     228727 2789 -   1771730 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I

a score=3561411.000000
s hg38.chr6_GL000254v2_alt   900006 425 +   4827813 gggaaatgaaag-aaaagtaacttgcaataaaataacataaacagtattttaatgtgtgagtgccaaggcccgactaccctagaagtcctgatggagtaagcagatgcttc---cacctattcacagaaccacggggatgaaactgctaccaacacaggctgatccaggtgctgagttggtgactcaactacctccagcatgttgccatcaatgaagtgatttaacaaaatgttgaacaactcttggtagcaaagttaattttccctaattttacacacaactataattgcattcctagaaagttcactgtatatttaaa-----aaaa-aattttaaaactgtattaagttataggctcagataattaaacacaggttttca-ctacgtgaatgtcctgggggacttttgagaatctgggtgagga-acaattctt
s panTro5.chr6             29862782 425 + 175400573 gggaaatgaaag-aaaagtaacttgcaataaaataacataaacagtattttaatgtgtgagtgccaaggcccgactaccctagaagtcctgatggagtaagcagatgcttc---cacctattcacagaaccacggggatggaactgctaccaacacaggctgatccaggtgctgagttggtgactcaactacctccagcatgttgccatcaatgaagtgatttaacaaaatgttgaacaactcttggtagcaaagttaattttccctaaatttacacacaactataattgcattcctagaaagttcattgtatattttta-----aaaa-attttaaaaactgtattaagttctaggctcagataattaaacacaggttttca-ctacatgaatgtcctgggggacttttgagaatctgggtgagga-acaattctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30097139 424 + 173848474 gggaaatgaaag-aaaagtaacttgcaataaaataacataaacagtattttaatgtgtgagtgccaaggcccgactaccctagaagtcctgatggagtaagcagatgcttc---cacctattcacagaaccacggggatggaactgctaccaacacaggctgatccaggtgctgagttggtgactcaactacctccagcatgttgccatcaatgaagtgatttaacaaaatgttgaacaactcttggtagcaaagttaattttccctaaatttacacacaactataattgcattcctagaaagttcattgtatattttt------aaaa-attttaaaaactgtattaagttctaggctcagataattaaacacaggttttca-ctacatgaatgtcctgggggacttttgagaatctgggtgagga-acaattctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5903765 419 +   6154872 gggaaatgaaag-aaaagtaacttgcaataaa-----ataaacagtattttaatgtgtgagtgccaaggcccgactaccctagaagtcctgatggagtaagcagatgcttc---cacctattcacagaaccacggggatggaactgctaccaacacaagctgatccaggtgctgagttggtgactcaactacctccagcatgttgccatcaatgaagtgatttaacaaaatgttgaacaactcttggtagcaaagttaattttccctaaatttacacacaactataattgcattcctagaaagttcattgtatattttta-----aaaa-attttaaaaactgtattaagttctaggctcagataattaaacacaggttttca-ctacatgaatgtcct-ggggacttttgagaatctgggtgagga-acaattctt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74608776 425 + 122973662 gggaaatgaaag-aaaagtaacttgcaataaaataacataaacagtattttaatgtgtgagtgccgaggcccaactaccctagaagtcttgatggagtaagcagatgcttc---cacctattcacagaaccacggagatggaactgctaccaacacaggctgatccaggtgctgagttggtgactcaactacctccagcatgttgtcgtcaacgaagtgatttaacaaaatgttgaacaactcttggtagcaaagttaattttccctaaatttacacagaactataattgcattcctagaaagttcattgtatatttaaa-----aaaa-attttaaaaactgtattaagttctgggctcagataattaaacacaggttttca-ctacatgaatgtcctaggggacttttgagaatctgggtgagga-acaattctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30093306 426 + 172585720 gggaaatgaaag-aaaagtaacttgcaataaaataatataaacagtattttaatgtgtgagtgccgaggcccaactaccctagaagtcttgatggagtaagcagatgcttc---cacctattcacagaaccacggggatggaactgctaccaacacaggctgatccgggtgctgagttggtgactcaactacctccagcatgttgccatcaatgaagtgatttaacaaaatgttgaacaactcttggtagcaaagttaattttccctaaatttacaccgaactataattgcattcctagaaagttcattgtatattaaaa-----aaaattttttttaaactgtattaagttctaggctcagataattaaacacaggttttca-ctacatgaatgtcctaggggacttttgagaatctgggtgagga-acaattctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29757027 425 - 170955103 gggaaatgaaag-aaaagtaacttgcaataaaataatataaacagtattttaatgtgtgagtgccgaggcccaactaccctagaagtcttgatggagtaagcagatgcttc---cacctattcacagaaccacggggatggaactgctaccaacacaggctgatccgggtgctgagttggtgactcaactacctccagcatgttgccatcaatgaagtgatttaacaaaatgttgaacaactcttggtagcaaagttaattttccctaaatttacaccgaactataattgcattcctagaaagttcattgtatatttaaa-----aaaa-ttttttttaactgtattaagttctaggctcagataattaaacacaggttttca-ctacatgaatgtcctaggggacttttgagaatctgggtgagga-acaattctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2804539 425 -   2996164 gggaaatgaaag-aaaagtaacttgcaataaaataatataaacagtattttaatgtgtgagtgccgaggcccaactaccctagaagtcttgatggagtaagcagatgcttc---cacctattcacagaaccacggggatggaactgctaccaacacaggctgatccgggtgctgagttggtgactcaactacctccagcatgttgccatcaatgaagtgatttaacaaaatgttgaacaactcttggtagcaaagttaattttccctaaatttacaccgaactataattgcattcctagaaagttcattgtatatttaaa-----aaaa-attttttaaactgtattaagttctaggctcagataattaaacacaggttttca-ctacatgaatgtcctaggggacttttgagaatctgggtgagga-acaattctt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     555635 425 +    766320 gggaaatgaaag-aaaagtaacttgcaataaaataatataaacagtattttaatgtgtgagtgccgaggcccaactaccctagaagtcttgatggagtaagcagatgcttc---cacctattcacagaaccacggggatggaactgctaccaacacaggctgatccaggtgctgagttggtgactcaactacctccagcatgttgccatcaatgaagtgatttaacaaaatgttgaacaactcttggtagcaaagttaattttccctaaatttacacagaactataattgcattcctagaaagttcattgtatatttaaa-----aaaa-attttttaaactgtattaagttctaggctcagataattaaacacaggttttca-ctacatgaatgtcctaggggacttttgagaatctgggtgagga-acaattctt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29011751 422 -  71996105 gggaaatgaaag-aaaagtaacttgcaataaaataatataaacagtattttaatgtgtgagtgccgaggcccgactaccctagaagtcttggtggagtaagcagatgcttc---cacctattcacagaaccacggggatggaactgctaccaacacaggctgatccaggtgctgagttggtgactcaactacctccagcatgttgccatcaatgaagtgatttaacaaaatgttgaacaactcttggtagcaaagttaattttccctaaatttacacagaactataattgcattcctagaaagttcattgtatattaaaa-----aaaa---attttaaactgtattaagttctaggctcagataattaaacacaggttttca-ctacatgaatgtcctaggggacttttgagaatctgggtgagga-acaatt-tt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     187953 425 +    290775 gggaaatgaaag-aaaagtaacttgcaataaaataatataaacagtattttaatgtgtgagtgccgaggcccaactaccctagaagtcttgatggagtaagcagatgcttc---cacctattcacagaaccacggggatggaactgctaccaacacaggctgatccaggtgctgagttggtgactcaactacctccagcatgttgccatcaatgaagtgatttaacaaaatgttgaacaactcttggtagcaaagttaattttccctaaatttacacagaactataattgcattcctagaaagttcattgtatatttaaa-----aaaa-tttttttaaactgtattaagttctaggctcagataattaaacacaggttttca-ctacatgaatgtcctaggggacttttgagaatctgggtgagga-acaattctt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2646704 422 -   3067355 gggaaatgaaag-aaaagtaacttgcaataaaataacataaacagtattttaatgtgtgagtgccgaggcccgactaccctagaagtcttgatggagtaagcagatgcttc---cacctattcacagaaccacggggatggaactgctaccaacataggctgatccaggtgctgagctggtgactcaactacctccagcatgttgccatcaatgaagtaatttaacaagatgttgaacaactcttggtagcaaagttaattttccctaaatttacacagaactataattgcattcctagaaagttcattgtatgttaaaa-----aaaa-aattt---aactgtattaagttctaggctcagataattaaacacaggttttca-ctgcatgaatgtcctaggggacttttgagaatctgggtgagga-acaattctt
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     311149 422 -    457564 aggaaattatagaaaaaataacttgcaataaaataacataaacggtattttaatgtgtgagtgccaaggccctactaccctagaagtcttgatggagtaggcagatgcttc---cacctattcacagaaccacgg-gatggaactgctaccaacacaggctgatccaggtgctgagttggtgattcagctacctccaacatgttgtcatcaatgaagtgatttaacaaaatgttgaaaaactcttggtagcaaagttaattttccctaaatttacacagaactgtaattgcattcctagaaagttcactgtatattaaaa-----aaaa-attt---atactgtattaagttctaggctcagataattaaacacaggttttca-ctacatgaatgtcctaggggacttttgagaatctgggtgagga-acaattctt
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           122333 420 +  18854210 ggaaaatagaag-aa----aacttgtgataaaataacataaatagaattt---tgtgtgtcttcc-aggcccaactacactagaagtcgtaacgaggtaggcagatgctttttacacctatcaagaaaatcacgagtatggaactgctaccaacacagccttatccaggtgctgagttggtgactcaactacttccagcacattgccatcaatgaagtgatttaacaaaatgttaaacaatttttggtagcaaagtcaatcttccctaaatttacaccgaactgtaattgcattcctagaaagttcattgtatattaaaa-----ccat-ttttttaaaactgtattaagttctaggctcagataattaaacacaggtttcac-gtacatgaatgtcctaggggacttttgagaatctggatgagga-acaattctt
i otoGar3.GL873550         I 56 C 0
s mm10.chr17               57942262 395 -  94987271 ---------gag-catagcaatttgctacaa-----cataaacagtatttta--GAGTGAGTGCCG--------TTTCCCTCgaa-----------gcaggcaaatgctta---cacctctccttagagtcacagaaatgaaacttctaccaacaca--ctgatacaggtgcatagccagtgactcaactacctccggcatgttgccatcaatgtagtgacttcaggaaatgttgagcaactcttggtagcaaagtcaagcttccctaaactcacacagaactgtaattgcattcctagaaagttcgctgcatattcagaccattaaaa-aaaaaaaaaagactattaagttctaggctcagataattaaacacaagtttttacctacatgaatgtcctgggggacttctgaaaatcTGGATAAAGAGAGAACTCTT
i mm10.chr17               C 0 I 663
e micMur3.chr6               112883 2770 + 123392446 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e cebCap1.NW_016107755v1     228727 2789 -   1771730 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I

a score=573099.000000
s hg38.chr6_GL000254v2_alt   900431 74 +   4827813 caacatgtaggtagtgctttgaagaatatcttacacctctgccccaaccataaatgtcaatagtgccccttccC
s panTro5.chr6             29863207 74 + 175400573 caacatgtaggtagtgctttgaagaatatcttacacctctgccctacccataaatgtcaatagtgccccttccC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30097563 74 + 173848474 caacatgtaggtagtgctttgaagaatatcttacacctctgccctacccataaatgtcaatagtgccccttccC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5904184 74 +   6154872 cagcatgtaggtagtgctttgaagaatatcttacacctctgccctacccataaatgtcaatagcaccccttccC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609201 74 + 122973662 caacatgtaggtagtgctttgaagaatatcttacacctctcccccacccataaatgtcaatagtgccccttccC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30093732 74 + 172585720 caacatgtaggtagtgctttgaagaatatcttacacctctgccccacccataaatgtcaatagtgccctttccC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29757452 74 - 170955103 caacatgtaggtagtgctttgaagaatatcttacacctctgccccacccataaatgtcaatagtgccctttccC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2804964 74 -   2996164 caacatgtaggtagtgctttgaagaatatcttacacctctgccccacccataaatgtcaatagtgccctttccC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556060 74 +    766320 caacatgtaggtagtgctttgaagaatatcttacacctctgccccacccataaatgtcaatagtgccctttccC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012173 74 -  71996105 caacatgtaggtagtgctttgaagaatatcttacacctctgccccacccataaatgtcaatagtgccccttccC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     188378 74 +    290775 caacatgtaggtagtgctttgaagaatatcttacacctctgccccacccataaatgtcaatagtgccctttccC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2647126 74 -   3067355 caacatgtaggtagtgctttgaagaatatcttacacctctgtcccacccataaatgtcaatagtgccccttccC
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     311571 74 -    457564 caacatgtaggtagtgccttgaagaatatcttacacctctgccccacccataaatgccaatagtgccccttccc
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           122753 73 +  18854210 caatgtgctggctgtcctttgaagaatatctgaaacccct-ccctatccataaatgccagtcgtgccccctttc
i otoGar3.GL873550         C 0 I 1388
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e cebCap1.NW_016107755v1     228727 2789 -   1771730 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I

a score=7098.000000
s hg38.chr6_GL000254v2_alt   900505 1 +   4827813 T
s panTro5.chr6             29863281 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30097637 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5904258 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609275 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30093806 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29757526 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805038 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556134 1 +    766320 T
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012247 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     188452 1 +    290775 T
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2647200 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     311645 1 -    457564 t
i aotNan1.NW_018509740v1   C 0 I 1710
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e otoGar3.GL873550           122826 1388 +  18854210 I
e cebCap1.NW_016107755v1     228727 2789 -   1771730 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I

a score=253638.000000
s hg38.chr6_GL000254v2_alt   900506 56 +   4827813 Tatcacctgaggttgggagttcgagaccagcctgaccagtgtggagaagccccaac
s panTro5.chr6             29863282 56 + 175400573 Tatcacctgaggttgggagtttgagaccagcctgaccagcgtggagaagccccatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30097638 56 + 173848474 Tatcacctgaggttgggagtttgagaccagcctgaccagcgtggagaagccccatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5904259 56 +   6154872 Tatcacctgaggtcgggagttcgagaccagcctgaccagcgtggagaagccccatc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609276 55 + 122973662 Tatcacct-aggtcgggagttcgagaccagcctgactaatgtagagaagccccatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30093807 50 + 172585720 Tatcacctgaggtccggagttcaagactagcctgaccaacgtggaga------atc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29757527 50 - 170955103 Tatcacctgaggtccggagttcaagactagcctgaccaatgtggaga------atc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805039 50 -   2996164 Tatcacctgaggtccggagttcaagactagcctgaccaatgtggaga------atc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556135 50 +    766320 Tatcacctgaggtccggagttcaagactaacctgaccaatgtggaga------atc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012248 50 -  71996105 Tatcacctgaggtccggagttcaagaccagcctgaccaatgtggaga------atc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     188453 50 +    290775 Tatcacctgaggtccggagttcaagactagcctgaccaatgtggaga------atc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2647201 50 -   3067355 Tatcacctgaggtcctgagttcaagaccatcctgaccaatgtggaga------atc
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e otoGar3.GL873550           122826 1388 +  18854210 I
e aotNan1.NW_018509740v1     311646 1710 -    457564 I
e cebCap1.NW_016107755v1     228727 2789 -   1771730 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I

a score=254527.000000
s hg38.chr6_GL000254v2_alt   900562 37 +   4827813 tctactaaaaatac-aaaattagccaggcatggtggtg
s panTro5.chr6             29863338 37 + 175400573 tctactaaaaatac-aaaattagccaggcatggtggtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30097694 37 + 173848474 tctactaaaaatac-aaaattagccaggcatggtggtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5904315 37 +   6154872 actactaaaaatac-aaaattagccaggcatggtggtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609331 37 + 122973662 tctactaaaaatac-aaaattagccaggcatggtggtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30093857 37 + 172585720 tctactaaaaatac-aaaattagccaggcatggtggtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29757577 37 - 170955103 tctactaaaaatac-aaaattagccaggcatggtggtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805089 37 -   2996164 tctactaaaaatac-aaaattagccaggcatggtggtg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556185 37 +    766320 tctactaaaaatac-aaaattagccaggcatggtggtg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012298 37 -  71996105 tctactaaaaatat-aaaattagccaggcatggtggtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     188503 37 +    290775 tctactaaaaatac-aaaattagccaggcatggtggtg
i manLeu1.NW_012099233v1   C 0 I 5979
s colAng1.NW_012115566v1    2647251 37 -   3067355 tctactaaaaatac-aaaattagccaggcatggtggta
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     231516 38 -   1771730 tctactaaaaatacaaaaattagctagccgtggtggta
i cebCap1.NW_016107755v1   I 2789 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e otoGar3.GL873550           122826 1388 +  18854210 I
e aotNan1.NW_018509740v1     311646 1710 -    457564 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I

a score=518558.000000
s hg38.chr6_GL000254v2_alt   900599 76 +   4827813 catgcccgtaatcctagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtga
s panTro5.chr6             29863375 76 + 175400573 catgcctgtaatcctagctactcaggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcagtga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30097731 76 + 173848474 catgcctgtaatcctagctactcaggaggctgaggcaggagaatcacttgaacccgggaggtggaggttgcagtga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5904352 76 +   6154872 catgcctgtaatcctagctactcaggaggctgaggcaggagaatcacttgaacctgggaggcggaggttgcagtga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609368 76 + 122973662 catgcctgtaatcccagctactcgggaggctgaggccggagaatcacttgaacccgggagacggaagttgcattga
i nomLeu3.chr1a            C 0 M 100
s rheMac8.chr4             30093894 76 + 172585720 catgcctgtaatcccagctactcaggaggctgaggcagaagaatcacttgaacccaggaggcagaggttgcagtga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29757614 76 - 170955103 catgcctgtaatcccagctactcaggaggctgaggcagaagaatcacttgaacccaggaggcagaggttgcaatga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805126 76 -   2996164 catgcctgtaatcccagctactcaggaggctgaggcagaagaatcacttgaacccaggaggcagaggttgcaatga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556222 76 +    766320 catgcctgtaatcccagctactcaggaggctgaggcagaagaatcacttgaacccaggaggcagaggttgcagtga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012335 76 -  71996105 catgcctgtaatcccagctactcaggaggctgaggcagaagaatcacttgaacctgagaggcagaggttgcagtga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     194519 76 +    290775 CATgcctgtaatcccagctactcaggaggctgaggcagaagaatcacttgaacccaggaggcagaggttgcagtga
i manLeu1.NW_012099233v1   I 5979 C 0
s colAng1.NW_012115566v1    2647288 76 -   3067355 catgcctgtaatcccagctactcaggaggctgaggcagaagaatcacttgaacctgggaggcagaggttgcagtga
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     231554 76 -   1771730 ggtgcctgcaatcccagctactggggaggctgaggcagaagaatcacttgaacccaggaggcagaggttgcagtga
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e otoGar3.GL873550           122826 1388 +  18854210 I
e aotNan1.NW_018509740v1     311646 1710 -    457564 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I

a score=44580.000000
s hg38.chr6_GL000254v2_alt   900675 16 +   4827813 gccaagatcat-----gccat
s panTro5.chr6             29863451 16 + 175400573 gccaagatcat-----gccgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30097807 16 + 173848474 gccaagatcat-----gccgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5904428 16 +   6154872 gccaagatcat-----gccgt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30093970 11 + 172585720 gccaagatcat----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29757690 11 - 170955103 gccaagatcat----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805202 11 -   2996164 gccaagatcat----------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556298 11 +    766320 gccaagatcat----------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012411 11 -  71996105 gccaagatcat----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     194595 11 +    290775 gccaagatcat----------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2647364 16 -   3067355 gccaagattataccat-----
i colAng1.NW_012115566v1   C 0 I 649
s cebCap1.NW_016107755v1     231630 16 -   1771730 gccaagatcgt-----gccac
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e otoGar3.GL873550           122826 1388 +  18854210 I
e aotNan1.NW_018509740v1     311646 1710 -    457564 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I
e nomLeu3.chr1a            74609444 100 + 122973662 M

a score=118349.000000
s hg38.chr6_GL000254v2_alt   900691 26 +   4827813 gccattgcacttcagcctgggtgaca
s panTro5.chr6             29863467 26 + 175400573 gccattgcacttcagcctgggtgaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30097823 26 + 173848474 gccattgcacttcagcctgggtgaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5904444 26 +   6154872 gccattgcacttcagcctgggtgaca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30093981 26 + 172585720 gccattgcactccagcctgggcaaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29757701 26 - 170955103 gccattgcactccagcctgggcaaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805213 26 -   2996164 gccattgcactccagcctgggcaaca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556309 26 +    766320 gccattgcactccagcctaggcaaca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012422 26 -  71996105 gccattgcactccagcctgggcaaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     194606 26 +    290775 gccattgcactccagcctgggcaaca
i manLeu1.NW_012099233v1   C 0 C 0
s cebCap1.NW_016107755v1     231646 21 -   1771730 -----tgcactccagcctaggcgaca
i cebCap1.NW_016107755v1   C 0 I 34
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e otoGar3.GL873550           122826 1388 +  18854210 I
e aotNan1.NW_018509740v1     311646 1710 -    457564 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I
e colAng1.NW_012115566v1    2647380 649 -   3067355 I
e nomLeu3.chr1a            74609444 100 + 122973662 M

a score=86779.000000
s hg38.chr6_GL000254v2_alt   900717 38 +   4827813 agagtcaaactcagtcaaaa---------aaaaaaaaaaaaaaaaaa
s panTro5.chr6             29863493 34 + 175400573 agagtgaaactcagtt-------------aaaaaaaaaaaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30097849 47 + 173848474 agagtgaaactcagttaaaaaaacaaaacaaaaacaacaaaaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5904470 30 +   6154872 agagtgaaactcagtt-------------aaaaa----aaaaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30094007 38 + 172585720 agagtgaaacttagtcaaaa---------aacaaaacaaaacaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29757727 38 - 170955103 agagtgaaactcagtcaaaa---------aacaaaacaaaacaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805239 33 -   2996164 agagtgaaactcagtcaa--------------aaaacaaaacaaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556335 38 +    766320 agagtgaaactcagtcaaaa---------aacaaaacaaaacaaaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012448 28 -  71996105 agagtgaaactcagtcaa-------------------aaaacaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     194632 38 +    290775 agagtgaaactcagtcaaaa---------aacaaaacaaaacaaaaa
i manLeu1.NW_012099233v1   C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e otoGar3.GL873550           122826 1388 +  18854210 I
e aotNan1.NW_018509740v1     311646 1710 -    457564 I
e cebCap1.NW_016107755v1     231667 34 -   1771730 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I
e colAng1.NW_012115566v1    2647380 649 -   3067355 I
e nomLeu3.chr1a            74609444 100 + 122973662 M

a score=30420.000000
s hg38.chr6_GL000254v2_alt   900755 7 +   4827813 aaCAGCT
s panTro5.chr6             29863527 7 + 175400573 aaCAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30097896 7 + 173848474 ACCAGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5904500 7 +   6154872 aaCAGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609544 7 + 122973662 AACAGCT
i nomLeu3.chr1a            M 100 C 0
s rheMac8.chr4             30094045 7 + 172585720 aaCAGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29757765 7 - 170955103 aaCAGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805272 7 -   2996164 aaCAGCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556373 7 +    766320 aaGAGCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012476 7 -  71996105 aaCAGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     194670 7 +    290775 aaGAGCT
i manLeu1.NW_012099233v1   C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e otoGar3.GL873550           122826 1388 +  18854210 I
e aotNan1.NW_018509740v1     311646 1710 -    457564 I
e cebCap1.NW_016107755v1     231667 34 -   1771730 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I
e colAng1.NW_012115566v1    2647380 649 -   3067355 I

a score=24024.000000
s hg38.chr6_GL000254v2_alt   900762 4 +   4827813 AAAA
s panTro5.chr6             29863534 4 + 175400573 AAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30097903 4 + 173848474 AAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5904507 4 +   6154872 AAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609551 4 + 122973662 AAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094052 4 + 172585720 AAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29757772 4 - 170955103 AAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805279 4 -   2996164 AAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556380 4 +    766320 AAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012483 4 -  71996105 AAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     194677 4 +    290775 AAAA
i manLeu1.NW_012099233v1   C 0 C 0
s aotNan1.NW_018509740v1     313356 4 -    457564 aaaa
i aotNan1.NW_018509740v1   I 1710 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e otoGar3.GL873550           122826 1388 +  18854210 I
e cebCap1.NW_016107755v1     231667 34 -   1771730 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I
e colAng1.NW_012115566v1    2647380 649 -   3067355 I

a score=326465.000000
s hg38.chr6_GL000254v2_alt   900766 52 +   4827813 GATGCATCAAAATGTTAACAAGGATTGCCTCTGGGCCATTAATTGTTGCATA-
s panTro5.chr6             29863538 52 + 175400573 GATGCATCAAAATGTTAACAAGGATTGCCTCTGGGCCATTAATTGTTGCATA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30097907 52 + 173848474 GATGCATCAAAATGTTAACAAGGATTGCCTCTGGGCCATTAATTGTTGCATA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5904511 52 +   6154872 GATGCATCAAAATGTTAACAAGGATTGCCTCTGGGCCATTAATTGTTGCATA-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609555 51 + 122973662 GGTGCATCAAAATTTTAACAAGGATTGCCTCTGGGCCATTAATTATTGCAT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094056 51 + 172585720 GATGCATCAAAATGTTAACAAGAATTGCCTCTGGGCCATTAATTTTTGCAT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29757776 51 - 170955103 GATGCATCAAAATGTTAACAAGAATTGCCTCTGGGCCATTAATTTTTGCAT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805283 51 -   2996164 GATGCATCAAAATGTTAACAAGAATTGCCTCTGGGCCATTAATTTTTGCAT--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556384 51 +    766320 GATGCATCAAAATGTTAACAAGAATTGCCTCTGGGCCATTAATTTTTGCAT--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012487 51 -  71996105 GATGCATCAAAATGTTAACAAGAATTGCCTCTGGGCCATTAATTTTTGCAT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     194681 51 +    290775 GATGCATCAAAATGTTAACAAGAATTGCCTCTGGGCCATTAATTTTTGCAT--
i manLeu1.NW_012099233v1   C 0 C 0
s cebCap1.NW_016107755v1     231701 52 -   1771730 GATGCATCAAAATGTTAAAAAGGATTGCCTCTGGGCCATTAATTATTGCAT-A
i cebCap1.NW_016107755v1   I 34 I 442
s aotNan1.NW_018509740v1     313360 52 -    457564 GATGCATCAAAATGTTAAAAAGGATTGCCTCTGGGCCATTAATTATTGCAT-A
i aotNan1.NW_018509740v1   C 0 I 422
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e otoGar3.GL873550           122826 1388 +  18854210 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I
e colAng1.NW_012115566v1    2647380 649 -   3067355 I

a score=39515.000000
s hg38.chr6_GL000254v2_alt   900818 9 +   4827813 ACttttctt
s panTro5.chr6             29863590 9 + 175400573 ACTTTTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30097959 8 + 173848474 ACTTTTC-T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5904563 9 +   6154872 ACTTTTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609606 9 + 122973662 ACttttctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094107 9 + 172585720 Atttttctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29757827 9 - 170955103 ACttttctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805334 9 -   2996164 ACttttctt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556435 9 +    766320 ACttttctt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012538 9 -  71996105 ACttttctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     194732 9 +    290775 ACttttctt
i manLeu1.NW_012099233v1   C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e otoGar3.GL873550           122826 1388 +  18854210 I
e aotNan1.NW_018509740v1     313412 422 -    457564 I
e cebCap1.NW_016107755v1     231753 442 -   1771730 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I
e colAng1.NW_012115566v1    2647380 649 -   3067355 I

a score=43734.000000
s hg38.chr6_GL000254v2_alt   900827 17 +   4827813 ttttacttttttttttt---
s panTro5.chr6             29863599 14 + 175400573 TTTTAC---TTTTTTTT---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30097967 14 + 173848474 TTTTAC---TTTTTTTT---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5904572 14 +   6154872 TTTTAC---TTTTTTTT---
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30094116 17 + 172585720 ttttac---ttttttttttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29757836 17 - 170955103 ttttac---ttttttttttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805343 17 -   2996164 ttttac---ttttttttttt
i macNem1.NW_012011356v1   C 0 I 56
s cerAty1.NW_012002711v1     556444 17 +    766320 ttttac---ttttttttttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012547 17 -  71996105 tttttc---ttttttttttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     194741 17 +    290775 ttttac---ttttttttttt
i manLeu1.NW_012099233v1   C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e otoGar3.GL873550           122826 1388 +  18854210 I
e aotNan1.NW_018509740v1     313412 422 -    457564 I
e cebCap1.NW_016107755v1     231753 442 -   1771730 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I
e colAng1.NW_012115566v1    2647380 649 -   3067355 I
e nomLeu3.chr1a            74609615  0 + 122973662 C

a score=3276.000000
s hg38.chr6_GL000254v2_alt   900844 1 +   4827813 t
s panTro5.chr6             29863613 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30097981 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5904586 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30094133 1 + 172585720 t
i rheMac8.chr4             C 0 I 56
s macFas5.chr4             29757853 1 - 170955103 t
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     556461 1 +    766320 t
i cerAty1.NW_012002711v1   C 0 I 56
s chlSab2.chr17            29012564 1 -  71996105 t
i chlSab2.chr17            C 0 I 58
s manLeu1.NW_012099233v1     194758 1 +    290775 t
i manLeu1.NW_012099233v1   C 0 I 56
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e otoGar3.GL873550           122826 1388 +  18854210 I
e aotNan1.NW_018509740v1     313412 422 -    457564 I
e cebCap1.NW_016107755v1     231753 442 -   1771730 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I
e colAng1.NW_012115566v1    2647380 649 -   3067355 I
e macNem1.NW_012011356v1    2805360 56 -   2996164 I
e nomLeu3.chr1a            74609615 0 + 122973662 C

a score=575586.000000
s hg38.chr6_GL000254v2_alt   900845 1050 +   4827813 tAAACAAGAAGTTTATTTAAACAACAAGACGCTTGACTTGAAGGGAAAACTATCTAGGATTCTTTTTTGTTTTAGAGTAATTTATCCCTACTTAAAGACAGATTGCTCTGCATGTAACAGCTAAGTACAAAAAAGTTATAAAATTGTCCTTGGTTTTACAATGATAAATGAAAAACATTAAAATTCTCCAATTGAACAAGGTATGCAAGGATTTTTATGTTGTTGTTTTTTTGTTGTTGTTGTTAAAACAGTGAGAGCAAAATAACTTACTGGAATATAAAGATAAGAGCTGAATGAGCATGCCACTAATGGAGAAAGGGGGTATTTTCACAGAATCAGTATTTTCCCC---CCCGTCTCCACTTGATGTCAATCAAAACATACCATTGGCTGTTTAGTTT-TAAAAAAAAAAAGTAATATGCTTGTGCACATATACCAGTTACTTTATGTACAGTAAAGGAATGGGGAAGGGGGAAATGAAAGAATAGAGAAAACTATACGGTAGTAGTCAGGATGTGGTGGAAGCAAATTGCAGTTTTCTAATTGAGAATGTAATCTTGGTCTTTAAAGAACAGAGTTCTGGAGTAAAGAAGCAGGTTCCCTTTTCAGTAGACACCTCCCGTCTGCTGTTGGAACACATCAATTGTATCTTCATCCTCCATTTCCAACTGTGCAGGTGTGTCTGTTTCATTGGTTGCCCGTCGAATCGGAATCTGATCTGCCTCATTGACAATCCCTGTCGTTCACAATAGGCTTTCATTAGTTTACTAAGTGGTGTATGCCTCTTAATCTTAAACTGCACCACAGAACCATCCTGCCCCGCCACCTTCAAATTAATATGATCGTTGTTCTCAGTCTTGACTCCTTCCTTGGGCTTTTCTTCGGCCATGGCAAGCGCCGGAGTCTCCTCAGCTGCCGCTTCACAAAAGAGGTACCAGGTCCGCTCCAAACGAGCACACAAGCAGCACCAGGAGCGGCAGAAGAAGGAGGCGGCAGCAGTGGACAAGGGGAGAGGGTGCGCGCACGTCGTGCTCTCCCTCCCTCCACCCTCAC
s panTro5.chr6             29863614 1054 + 175400573 TAAACAAGAAGTTTATTTAAACAACAAGACGCTTGACTTGAAGGGAAAACTATCTAGGATTCTTTTTTGTTTTAGAGTAATTTATCCCTACTTAAAGACAGATTGCTCTACATGTAACAGCTAAGTACAAAAAAGTTATAAAATTGTCCTTGGTTTTACAATGATAAATGAAAAACATTAAAATTCTCCAACTGAACAAGGTATGCAAGGATTTTTAtgttgttgtttttctgttgttgttgttAAAACAGTGAGAGCAAAATAACTTACTGGAATATAAAGATAAGAGCTGAATGAGCATGCCACTAATGGAGAAAGGGGGTATTTTCACAGAATCAGTATTTTTCCCCATCCCGTCTCCACTTGATGTCAATCAAAACATACCATTGGCTGTTTAGTTTAAAAAAAAAAAAAGTAATATGCTTGTGCACATATACCAGTTACTTTATGTACAATAAAGGAATGGGGAAGGGGGAAATGAAAGAATAGAGAAAACTATACGGTAGTAGTCAGGATGTGGTGGAACCGAATTGCAGTTTTCTAATTGAGAATGTAATCTTGGTCTTTAAAGAACAGAGTTCTGGAGTAAAGAAGCAGGTTCCCTTTTCAGTAGACACCTCCCGTCTGCTGTTGGAACACATCAATTTTATCTTCATCCTCCATTTCCAACTGTGCAGGTGTGTCTGTTTCATTGGTTGCCTGTCGAATCGGAATCTGATCTGCCTCATTGACAATCCCTGTCGTTCACAATAGGCTTTCATTAGTTTACTAAGTGGTGTATGCCTCTTAATCTTAAACTGCACCACAGAACCATCCTGCCCCGCCACCTTCAAATTAATATGATCGTTGTTCTCAGTCTTGACTCCTTCCTTGGGCTTTTCTTCGGCCATGGCGAGCGCCGGAGTCTCCTCAGCTGCCGCTTCACAACAGAGGTACCAGGTCCGCTCCAAACGAGCACACAAGCAGCACCAGGAGCGGCAGAAGAAGGAGGCGGCAGCCGTGGACACGGGGAGAGGGTGCGCGCACGTCGTGCGCTCCCTCCCTCCACCCTCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30097982 1053 + 173848474 TAAACAAGAAGTTTATTTAAACAACAAGACGCTTGACTTGAAGGGAAAACTATCTAGGATTCTTTTTTGTTTTAGAGTAATTTATCCCTACTTAAAGACAGATTGCTCTACATGTAACAGCTAAGTACAAAAAAGTTATAAAATTGTCCTTGGTTTTACAATGATAAATGAAAAACATTAAAATTCTCCAACTGAACAAGGTATGCAAGGATTTTTAtgttgttgtttttctgttgttgttgttAAAACAGTGAGAGCAAAATAACTTACTGGAATATAAAGATAAGAGCTGAATGAGCATGCCACTAATGGAGAAAGGGGGTATTTTCACAGAATCAGTATTTTTCCCCATCCCTTCTCCACTTGATGTCAATCAAAACATACCATTGGCTGTTTAGTTT-AAAAAAAAAAATGTAATATGCTTGTGCACATATACCAGTTACTTTATGTACAATAAAGGAATGGGGAAGGGGGAAATGAAAGAATAGAGAAAACTATACGGTAGTAGTCAGGATGTGGTGGAACCGAATTGCAGTTTTCTAATTGAGAATGTAATCTTGGTCTTTAAAGAACAGAGTTCTGGAGTAAAGAAGCAGGTTCCCTTTTCAGTAGACACCTCCCGTCTGCTGTTGGAACACATCAATTTTATCTTCATCCTCCATTTCCAACTGTGCAGGTGTGTCTGTTTCATTGGTTGCCTGTCGAATCGGAATCTGATCTGCCTCATTGACAATCCCTGTCGTTCACAATAGGCTTTCATTAGTTTACTAAGTGGTGTATGCCTCTTAATCTTAAACTGCACCACAGAACCATCCTGCCCCGCCACCTTCAAATTAATATGATCGTTGTTCTCAGTCTTGACTCCTTCCTTGGGCTTTTCTTCGGCCATGGCGAGCGCCGGAGTCTCCTCAGCTGCCGCTTCACAACAGAGGTACCAGGTCCGCTCCAAACGAGCACACAAGCAGCACCAGGAGCGGCAGAAGAAGGAGGCGGCAGCCGTGGACACGGGGAGAGGGTGCGCGCACGTCTTGCGCTCCCTCCCTCCACCCTCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5904587 1046 +   6154872 TAAACAAGAAGTTTATTTAAACAACAAGACGCTTGACTTGAAGGGAAAACTATCTAGGATTCTTTTTTGTTTTAGAGTAATTTATCCCTACTTAAAGACAGATTGCTCTACATGTAACAGCTAAGTACAAAAAAGTTATAAAATTGTCCTTGGTTTTACAATGATAAATGAAAAACATTAAAATTCTCCAATTGAACAAGGTATGCAAGGATTTTTAtgttgttgtttttc--tttttgttgttAAAACAGTGAGAGCAAAATAATTTACTGGAATATAAAGATAAGAGCTGAATGAGCATGCCACTAATGGAGAAAGGGGGTATTTTCACAGAATCAGTATTTTTCCCCATCCCGTCTCCACTTGATGTCAATCAAAACATACCATTGGCTGTTTAGTTA----AAAAAAAATGTAATATGCTTGTGCACATATACCAGTTACTTTATGTACAATGAAGGAATGGGGAAGGGGGAAATGAAAGAATAGAGAAAACTATACGGTAGTAGTCAGGATGTGGTGGAACCGAATTGCAGTTTTCTAATTGAGAGTGTAATCTTGGTCTTTAAAGAACAGAGTTCTGGAGTAAAGAAGCAGGTTCCCTTTTCAGTAGACACCTCCCGTCTGCTGTTGGAACACATCAATTGTATCTTCATCCTCCATTTCCAACTGTGCAGGTGTGTCTGTTTCATTGGTTGCCTGTCGAATCGGAATCTGATCTGCCTCATTGACAATCCCTGTCGTTCACAATAGGCTTTCATTAGTTTACTAAGTGGTGTATGCCTCTTAATCTTAAACTGCACCACAGAACCATCCTGCCCCGCCACCTTCAAATTAATATGATCGTTGTTCTCAGTCTTGACT-CTTCCTTGGG-TTTTCTTCGGCCATGGCGAGCGCCGGAGTCTCCTCAGCTGCCGCTTCACAAAAGAGGTACCAGGTCCGCTCCAAACGAGCACACAAGCAGCACCAGGAGCGGCAGAAGAAGGAGGCGGCAGCCGTGGACACGGGGAGAGGGTGCGCGCACGTCGTGCGCTCCCTCCCTCCACCCTCAC
i gorGor5.CYUI01015250v1   C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657  663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e otoGar3.GL873550           122826 1388 +  18854210 I
e aotNan1.NW_018509740v1     313412  422 -    457564 I
e cebCap1.NW_016107755v1     231753  442 -   1771730 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I
e colAng1.NW_012115566v1    2647380  649 -   3067355 I
e manLeu1.NW_012099233v1     194759   56 +    290775 I
e chlSab2.chr17            29012565   58 -  71996105 I
e cerAty1.NW_012002711v1     556462   56 +    766320 I
e macNem1.NW_012011356v1    2805360   56 -   2996164 I
e macFas5.chr4             29757854    0 - 170955103 C
e rheMac8.chr4             30094134   56 + 172585720 I
e nomLeu3.chr1a            74609615    0 + 122973662 C

a score=7731.000000
s hg38.chr6_GL000254v2_alt   901895 13 +   4827813 ttttctttttttt--
s panTro5.chr6             29864668 12 + 175400573 ttttc-ttttttt--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099035 11 + 173848474 ttttc--tttttt--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5905633 11 +   6154872 ttttc--tttttt--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609615 11 + 122973662 ttttc--tttctt--
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873550           124214 13 +  18854210 TTTTC--TTtttctt
i otoGar3.GL873550         I 1388 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e aotNan1.NW_018509740v1     313412 422 -    457564 I
e cebCap1.NW_016107755v1     231753 442 -   1771730 I
e calJac3.chrUn_GL286223       8077 3491 +    132061 I
e colAng1.NW_012115566v1    2647380 649 -   3067355 I
e manLeu1.NW_012099233v1     194759 56 +    290775 I
e chlSab2.chr17            29012565 58 -  71996105 I
e cerAty1.NW_012002711v1     556462 56 +    766320 I
e macNem1.NW_012011356v1    2805360 56 -   2996164 I
e macFas5.chr4             29757854  0 - 170955103 C
e rheMac8.chr4             30094134 56 + 172585720 I

a score=13203.000000
s hg38.chr6_GL000254v2_alt   901908 21 +   4827813 tctttcttttttttggtgggg
s panTro5.chr6             29864680 21 + 175400573 tctttcttttttttggggggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099046 20 + 173848474 tctttc-tttttttggggggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5905644 20 +   6154872 tctttc-ttttttttgggggg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609626 16 + 122973662 ttttttttttttttt-----g
i nomLeu3.chr1a            C 0 C 0
s calJac3.chrUn_GL286223      11568 16 +    132061 ttttttttttttttaa-----
i calJac3.chrUn_GL286223   I 3491 C 0
s otoGar3.GL873550           124227 16 +  18854210 tcttttttttttttga-----
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e aotNan1.NW_018509740v1     313412 422 -    457564 I
e cebCap1.NW_016107755v1     231753 442 -   1771730 I
e colAng1.NW_012115566v1    2647380 649 -   3067355 I
e manLeu1.NW_012099233v1     194759 56 +    290775 I
e chlSab2.chr17            29012565 58 -  71996105 I
e cerAty1.NW_012002711v1     556462 56 +    766320 I
e macNem1.NW_012011356v1    2805360 56 -   2996164 I
e macFas5.chr4             29757854  0 - 170955103 C
e rheMac8.chr4             30094134 56 + 172585720 I

a score=78499.000000
s hg38.chr6_GL000254v2_alt   901929 51 +   4827813 ggacggagtttcactcttgtcacccaggctggagtgcaatggcgtgatctc
s panTro5.chr6             29864701 51 + 175400573 ggacggagtttcactcttgtcacccaggctggagtgcaatggcgtgatctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099066 51 + 173848474 ggacggagtttcactcttgtcacccaggctggagtgcaatggcgtgatctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5905664 51 +   6154872 ggacggagtttcactcttgtcacccacgctggagtgcaatggcgtgatctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609642 51 + 122973662 agacggagtttcactcttgacacccaggctggagtgcaatggtgtgatctc
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29757854 51 - 170955103 agatggcgtttcactcttgtcagccagactggagtgcaatggcgtgatctc
i macFas5.chr4             C 0 C 0
s calJac3.chrUn_GL286223      11584 41 +    132061 -gacaaagttttgctcttgtcgcccacgttggagtg---------gatctc
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           124243 45 +  18854210 -ggcagagcctcaagc-agtccccctgggtagagt-ccatggcatcac---
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e saiBol1.JH378357           234956 3484 -    242197 I
e aotNan1.NW_018509740v1     313412 422 -    457564 I
e cebCap1.NW_016107755v1     231753 442 -   1771730 I
e colAng1.NW_012115566v1    2647380 649 -   3067355 I
e manLeu1.NW_012099233v1     194759 56 +    290775 I
e chlSab2.chr17            29012565 58 -  71996105 I
e cerAty1.NW_012002711v1     556462 56 +    766320 I
e macNem1.NW_012011356v1    2805360 56 -   2996164 I
e rheMac8.chr4             30094134 56 + 172585720 I

a score=37816.000000
s hg38.chr6_GL000254v2_alt   901980 26 +   4827813 gactgacggcgacttccgcctcccgg
s panTro5.chr6             29864752 26 + 175400573 gactgacggcgacttccgcctcccgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099117 26 + 173848474 gactgacggcgacttccgcctcccgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5905715 26 +   6154872 gactgacggcgacttccgcctcccgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609693 26 + 122973662 ggctcactacaacttctgcctcccgg
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29757905  6 - 170955103 ggctca--------------------
i macFas5.chr4             C 0 C 0
s calJac3.chrUn_GL286223      11625 26 +    132061 ggctcactccaacctccgtctcattg
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           238440 26 -    242197 ggctcactgcaacctccgtctcattg
i saiBol1.JH378357         I 3484 C 0
s otoGar3.GL873550           124288 26 +  18854210 agctcacagcaacctccaactcctgg
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e aotNan1.NW_018509740v1     313412 422 -    457564 I
e cebCap1.NW_016107755v1     231753 442 -   1771730 I
e colAng1.NW_012115566v1    2647380 649 -   3067355 I
e manLeu1.NW_012099233v1     194759 56 +    290775 I
e chlSab2.chr17            29012565 58 -  71996105 I
e cerAty1.NW_012002711v1     556462 56 +    766320 I
e macNem1.NW_012011356v1    2805360 56 -   2996164 I
e rheMac8.chr4             30094134 56 + 172585720 I

a score=8013.000000
s hg38.chr6_GL000254v2_alt   902006 2 +   4827813 at
s panTro5.chr6             29864778 2 + 175400573 at
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099143 2 + 173848474 at
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5905741 2 +   6154872 at
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609719 2 + 122973662 at
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094190 2 + 172585720 at
i rheMac8.chr4             I 56 C 0
s macFas5.chr4             29757911 1 - 170955103 -t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805416 2 -   2996164 at
i macNem1.NW_012011356v1   I 56 C 0
s cerAty1.NW_012002711v1     556518 2 +    766320 at
i cerAty1.NW_012002711v1   I 56 C 0
s manLeu1.NW_012099233v1     194815 2 +    290775 at
i manLeu1.NW_012099233v1   I 56 C 0
s calJac3.chrUn_GL286223      11651 2 +    132061 gt
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           238466 2 -    242197 gt
i saiBol1.JH378357         C 0 C 0
s otoGar3.GL873550           124314 2 +  18854210 gc
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e aotNan1.NW_018509740v1     313412 422 -    457564 I
e cebCap1.NW_016107755v1     231753 442 -   1771730 I
e colAng1.NW_012115566v1    2647380 649 -   3067355 I
e chlSab2.chr17            29012565 58 -  71996105 I

a score=68144.000000
s hg38.chr6_GL000254v2_alt   902008 9 +   4827813 tcaagcgat
s panTro5.chr6             29864780 9 + 175400573 tcaagcgat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099145 9 + 173848474 tcaggcgat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5905743 9 +   6154872 tcaagcgat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609721 9 + 122973662 tcaagcgat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094192 9 + 172585720 tcaagcgat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29757912 9 - 170955103 tcaagcgat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805418 9 -   2996164 tcaagcgat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556520 9 +    766320 tcaagcgat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012623 9 -  71996105 tcaagcgat
i chlSab2.chr17            I 58 C 0
s manLeu1.NW_012099233v1     194817 9 +    290775 tcaagcgat
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      11653 9 +    132061 tcaagggaa
i calJac3.chrUn_GL286223   C 0 I 7
s saiBol1.JH378357           238468 9 -    242197 tcaagcgat
i saiBol1.JH378357         C 0 I 7
s otoGar3.GL873550           124316 9 +  18854210 tcaagcgag
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e aotNan1.NW_018509740v1     313412 422 -    457564 I
e cebCap1.NW_016107755v1     231753 442 -   1771730 I
e colAng1.NW_012115566v1    2647380 649 -   3067355 I

a score=490071.000000
s hg38.chr6_GL000254v2_alt   902017 62 +   4827813 tctcctgtctcagcctcccgagtagctgagactacaggtgcacaccaccatggctggctaaa
s panTro5.chr6             29864789 62 + 175400573 tctcctgtctcagcctcccgagtagctgagactacaggtgcacaccaccatgcctggctaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099154 62 + 173848474 tctcctgtctcagcctcccgagtagctgagactacaggtgcacaccaccatgcctggctaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5905752 62 +   6154872 tctcctgtctcagcctcccgagtagctgagactacaggtgcacaccaccatgcctggctaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609730 62 + 122973662 tctcctgcctcagcctcctgagtagctgagactacaggtgcacactaccatgcctggctaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094201 62 + 172585720 tctcctgcctcagcctcccaagtagctgagactacaggttcacaccaccatgcctggctaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29757921 62 - 170955103 tctcctgcctcagcctcccaagtagctgagactacaggttcacaccaccatgcctggctaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805427 62 -   2996164 tctcctgcctcagcctcccaagtagctgagactacaggttcacaccaccatgcctggctaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556529 62 +    766320 tctcctgcctcagcctcccaagtagctgagactacaggttcacaccaccatgcctggctaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012632 62 -  71996105 tctcctgcctcagcctcccaagcagctgagactacaggttcacaccaccatgcctggctaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     194826 62 +    290775 tctcctgcctcagcctcccaagtagctgagactacaggttcacaccaccatgcctggctaaa
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      11669 62 +    132061 tctcctgcctcagcctccccagtagctgggatttcaggtgcctgccaccaagcccaattaat
i calJac3.chrUn_GL286223   I 7 C 0
s saiBol1.JH378357           238484 62 -    242197 tctcctgcctcagcctccccagtagctgggatttcaggtgcctgccaccaagcccaattaat
i saiBol1.JH378357         I 7 C 0
s aotNan1.NW_018509740v1     313834 62 -    457564 tctcctgcttcagcctccccagtagctgggatttcaggtgcctgccaccaagcccgattaat
i aotNan1.NW_018509740v1   I 422 C 0
s otoGar3.GL873550           124325 60 +  18854210 tctcctgcctctgcctcccaagtagctgcaaccataggcacccgccacaatgcccagcta--
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e cebCap1.NW_016107755v1     231753 442 -   1771730 I
e colAng1.NW_012115566v1    2647380 649 -   3067355 I

a score=191474.000000
s hg38.chr6_GL000254v2_alt   902079 22 +   4827813 ttttgtatttttagtagagaca
s panTro5.chr6             29864851 22 + 175400573 ttttgtatttttagtagagaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099216 22 + 173848474 ttttgtatttttagtagagaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5905814 22 +   6154872 ttttgtatttttagtagagaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609792 22 + 122973662 ttttgtacttttagtagagaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094263 22 + 172585720 ttttgtatttttagtagagatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29757983 22 - 170955103 ttttgtatttttagtagagatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805489 22 -   2996164 ttttgtatttttagtagagatg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556591 22 +    766320 ttttgtatttttagtagagatg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012694 22 -  71996105 ttttgtatttttagtagatatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     194888 22 +    290775 ttttgtatttttagtagagatg
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      11731 22 +    132061 ttttgtatttttagtagaaacg
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           238546 22 -    242197 ttttgtatttttagtagaaacc
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232195 22 -   1771730 ttttgtatttttagtagaaacg
i cebCap1.NW_016107755v1   I 442 C 0
s aotNan1.NW_018509740v1     313896 22 -    457564 ttttgtatttttagtagaaacg
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           124385 22 +  18854210 ttttttggttgcagctgtcatt
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e colAng1.NW_012115566v1    2647380 649 -   3067355 I

a score=945447.000000
s hg38.chr6_GL000254v2_alt   902101 115 +   4827813 gggtttcacaatattggtcaggctggtctcgaactcctgacctcaggtg-atccacctgcctcagcctcccaaagtgctgggattacaggcataagccactgtgcggggccTGCAC
s panTro5.chr6             29864873 115 + 175400573 gggtttcacaatattggtcaggctggtctcgaactcctgacctcaggtg-atccacctgcctcagcctcccaaagtgctgggattacaggcataagccactgtgcggggccTGCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099238 115 + 173848474 gggtttcacaatattggtcaggctggtctcgaactcctgacctcaggtg-atccacctgcctcagcctcccaaagtgctgggattacaggcataagccactgtgcggggccTGCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5905836 115 +   6154872 gggtttcacaatattggtcaggctggtctcgaactcctgacctcaggtg-atgcacctgcctcagcctcccaaagtgctgggattacaggcataagccactgtgcggggccTGCAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609814 115 + 122973662 cggtttcacaatattggtcaggctggtctcgaacttctgacctcaggtg-atccacctgcctcagcctcccaaagtgctgggattacagacgtgagccactgtgcggggccTGCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094285 115 + 172585720 gggtttcacaatattgatcaggctggtctcgaactcctgacctcaggtg-atccacctgacttagcctcccaaagtgctggggttacaggtgtgagtcactgcacagggccTGTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758005 115 - 170955103 gggtttcacaatattgatcaggctggtctcgaactcctgacctcaggtg-atccacctgactcagcctcccaaagtgctggggttacaggtgtgagtcactgcacagggccTGTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805511 115 -   2996164 gggtttcacaatattgatcaggctggtctcaaactcctgacctcaggtg-atccacctgactcagcctcccaaagtgctggggttacaggtgtgagtcactgcacagggccTGTAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556613 115 +    766320 gggtttcacaatattgatcaggctggtctcgaactcctgacctcaggtg-atccacctgactcagcctcccaacgtgctggggttacaggtgtgagtcactgcacagggccTGTAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012716 115 -  71996105 gggtttcacaatattgatcatgctggtctcgaactccggacctcaggtg-atccacctgactcagcctcccaaagtgctggggttacaggtgagagtcactgcgcagggccTGTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     194910 115 +    290775 gggtttcacaatattgatcaggctggtctcgaactcctgacctcaggtg-atccacttgactcagcctcccaacgtgctggggttacaggtgtgagtcactgcacagggccTGTAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648029 115 -   3067355 gggtttcacaatattgatcaggctggtctcgaactcctgacctcaggtg-atccacctgactcagcctcccaaagtgctggggttacaggtgtgagtcactgcgcagggccTATAC
i colAng1.NW_012115566v1   I 649 C 0
s calJac3.chrUn_GL286223      11753 103 +    132061 tggtttcaccacgtgggccaggttggtttggaactcctgacctcaggtg-atccacctgcctcgccctcccaaagtgctgagattaca------------tgcgCTCCATCTGCAT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           238568 102 -    242197 tggtttcaccgcgtgggacaggttggtttggaactcctgacctcaggtg-atccacctgcctcgccctcccaaagt-ctgagattaca------------TGTGCCCTGTCTGCAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232217 102 -   1771730 tggtttcaccacgtgggccaggttggtttggaactcctgacctcaggtg-acccacctgcctcgccctcccaaagt-ctgagattaca------------TGTGCCCCGTCTGCAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     313918 103 -    457564 tggtttcaccacgtgggccaggttggtttggaactcctgacctcaggtg-atccacctgcctcgccctcccaaagtgctgagattaca------------tgcgCCCCGTCTGCAT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           124407  60 +  18854210 --gttgtttgatg-ggcccgggctggattcgaactcgtcaccttaggtgtatgtggctggcgc-----------------------------------------------------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I

a score=12346.000000
s hg38.chr6_GL000254v2_alt   902216 3 +   4827813 ACT
s panTro5.chr6             29864988 3 + 175400573 ACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099353 3 + 173848474 ACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5905951 3 +   6154872 ACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609929 3 + 122973662 CCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094400 3 + 172585720 ACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758120 3 - 170955103 ACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805626 3 -   2996164 ACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556728 1 +    766320 A--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012831 3 -  71996105 ACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195025 1 +    290775 A--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648144 3 -   3067355 ACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      11856 3 +    132061 ACT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           238670 3 -    242197 ACT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232319 3 -   1771730 ACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     314021 3 -    457564 ACT
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e dasNov3.JH582591            49977 1487 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e otoGar3.GL873550           124467 0 +  18854210 C

a score=173727.000000
s hg38.chr6_GL000254v2_alt   902219 16 +   4827813 TTTCTTTCGTCATATT
s panTro5.chr6             29864991 16 + 175400573 TTTCTTTCGTCATATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099356 16 + 173848474 TTTCTTTCGTCATATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5905954 16 +   6154872 TTTCTTTCGTCATATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609932 16 + 122973662 TTTCTTTCGTCATATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094403 16 + 172585720 TTTCTTTTGTCATATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758123 16 - 170955103 TTTCTTTTGTCATATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805629 16 -   2996164 TTTCTTTTGTCATATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556729 13 +    766320 ---CTTTTGTCATATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012834 16 -  71996105 TTTCTTTTGTCATATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195026 13 +    290775 ---CTTTTGTCATATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648147 16 -   3067355 TTTCTTTTGTCGTATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      11859 16 +    132061 TTTCTTTTGTCATATT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           238673 16 -    242197 TTTCTTTTGTCATATT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232322 16 -   1771730 TTTCTTTTGTCATATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     314024 16 -    457564 TTTCTTTTGTCATATT
i aotNan1.NW_018509740v1   C 0 C 0
s dasNov3.JH582591            51464 16 +    102524 tttttattgttatatt
i dasNov3.JH582591         I 1487 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26237551 3512 +  26524999 I
e otoGar3.GL873550           124467  0 +  18854210 C

a score=619125.000000
s hg38.chr6_GL000254v2_alt   902235 56 +   4827813 TGTTGTTCAACTTTTATTCAAATGTTTTACAAGTGTCTCCTCTATAAATCATTTTT
s panTro5.chr6             29865007 56 + 175400573 TGTTGTTCAACTTTTATTCAAATGTTGTACAAGTGTCTCCTCTATAAATCATTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099372 56 + 173848474 TGTTGTTCAACTTTTATTCAAATGTTGTACAAGTGTCTCCTCTATAAATCATTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5905970 55 +   6154872 TGTTGTTCAACTTTTATTCAAATGTTTTACAAGTGTCTCCTCTATAAATCA-TTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74609948 56 + 122973662 TGTTGTTCAACTTTTATTCAAATGTTTTACAAGTGTCTCCTCTATAAATCATTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094419 56 + 172585720 TGTTGTTCAACTTTTGTTCAAATGTTTTACAAGTGTCTCCTCTATAAATCATTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758139 56 - 170955103 TGTTGTTCAACTTTTGTTCAAATGTTTTACAAGTGTCTCCTCTATAAATCATTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805645 56 -   2996164 TGTTGTTCAACTTTTGTTCAAATGTTTTACAAGTGTCTCCTCTATAAATCATTTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556742 56 +    766320 TGTTGTTCAACTTTTGTTCAAATGTTTTACAAGTGTCCCCTCTATAAATCATTTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012850 56 -  71996105 TGTTGTTCAACTTTTGTTCAAATGTTTTACAAGTGTCTCCTCTATAAATCACTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195039 52 +    290775 TGTTGTTCAACTTTTGTTCAAATGTTTTACAAGTGTCCCCTCT----ATCATTTCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648163 56 -   3067355 TGTTGTTCAACTTTTGTTCAAATGTTTTACAAGTGTCGCCTCTATAAATCATTTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      11875 56 +    132061 CGTTGTTCAACTTTTGTTCAAATTTTTTACAAGTGTCTCCTCTATATATCATTCtt
i calJac3.chrUn_GL286223   C 0 I 315
s saiBol1.JH378357           238689 56 -    242197 CGTTGCTCAACTTTTGTTCAAATTTTTTACAAGTGTCTCCTCTATATATCATTCTT
i saiBol1.JH378357         C 0 I 1
s cebCap1.NW_016107755v1     232338 56 -   1771730 TGTTGTTCAACTTTTGTTCAAATTTTTTACAAGCGTCTCCTGTATATATCATTCTT
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018509740v1     314040 56 -    457564 CGTTGTTCAACTTTTGTTCAAATTTTTTACAAGTGTCTCCTCTATGTATCATTCTT
i aotNan1.NW_018509740v1   C 0 I 1
s canFam3.chr35            26241063 56 +  26524999 TGTTATTCAATGTTCTCTCAAATGTCTTACAGGTGTTACCTTTGTAACTACTTCGT
i canFam3.chr35            I 3512 C 0
s dasNov3.JH582591            51480 55 +    102524 tgctgttcaatttttgttcacattttctacaagttttacctttata-atcagTTTG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e otoGar3.GL873550           124467  0 +  18854210 C

a score=44272.000000
s hg38.chr6_GL000254v2_alt   902291 4 +   4827813 AATT
s panTro5.chr6             29865063 4 + 175400573 AATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099428 4 + 173848474 AATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906025 4 +   6154872 AATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74610004 4 + 122973662 AATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094475 4 + 172585720 AATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758195 4 - 170955103 AATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805701 4 -   2996164 AATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556798 4 +    766320 AATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012906 4 -  71996105 AATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195091 4 +    290775 AATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648219 4 -   3067355 AATT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           238746 4 -    242197 AATT
i saiBol1.JH378357         I 1 C 0
s cebCap1.NW_016107755v1     232395 4 -   1771730 AATT
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018509740v1     314097 4 -    457564 AATT
i aotNan1.NW_018509740v1   I 1 C 0
s canFam3.chr35            26241119 4 +  26524999 AGTT
i canFam3.chr35            C 0 I 58
s dasNov3.JH582591            51535 4 +    102524 AAGT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e otoGar3.GL873550           124467 0 +  18854210 C
e calJac3.chrUn_GL286223      11931 315 +    132061 I

a score=100230.000000
s hg38.chr6_GL000254v2_alt   902295 11 +   4827813 GATTTATAAAG
s panTro5.chr6             29865067 11 + 175400573 GATTTATAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099432 11 + 173848474 GATTTATAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906029 11 +   6154872 GATTTATAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74610008 11 + 122973662 GATTTATAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094479 11 + 172585720 GATTTATAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758199 11 - 170955103 GATTTATAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805705 11 -   2996164 GATTTATAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556802 11 +    766320 GATTTATAAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012910 11 -  71996105 GATTTATAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195095 11 +    290775 GATTTATAAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648223 11 -   3067355 GATTTATAAAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           238750 11 -    242197 GATTTATAAAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232399 11 -   1771730 GATTTATAAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     314101 11 -    457564 GATTTATAAAG
i aotNan1.NW_018509740v1   C 0 I 360
s dasNov3.JH582591            51539  4 +    102524 TATT-------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123 58 +  26524999 I
e otoGar3.GL873550           124467  0 +  18854210 C
e calJac3.chrUn_GL286223      11931 315 +    132061 I

a score=108442.000000
s hg38.chr6_GL000254v2_alt   902306 16 +   4827813 GTTT-AAAGAAAACCTT
s panTro5.chr6             29865078 17 + 175400573 GTTTAAAAGAAAACCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099443 17 + 173848474 GTTTAAAAGAAAACCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906040 17 +   6154872 GTTTAAAAGAAAACCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74610019 17 + 122973662 ATTTAAAAGAAAACCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094490 17 + 172585720 GTTTAAAAGAAAACCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758210 17 - 170955103 GTTTAAAAGAAAACCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805716 17 -   2996164 GTTTAAAAGAAAACCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556813 17 +    766320 GTTTAAAAGAAAACCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012921 17 -  71996105 GTTTAAAAGAAAACCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195106 17 +    290775 GTTTAAAAGAAAACCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648234 16 -   3067355 ATTTTTTA-AAAACCTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           238761 17 -    242197 GTATAAAAGAAAATCTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232410 17 -   1771730 GTATAAAAGAAAATCCT
i cebCap1.NW_016107755v1   C 0 C 0
s dasNov3.JH582591            51543 12 +    102524 ATTT-----TAAGCCTC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123 58 +  26524999 I
e otoGar3.GL873550           124467  0 +  18854210 C
e aotNan1.NW_018509740v1     314112 360 -    457564 I
e calJac3.chrUn_GL286223      11931 315 +    132061 I

a score=29345.000000
s hg38.chr6_GL000254v2_alt   902322 5 +   4827813 CCT-AG
s panTro5.chr6             29865095 5 + 175400573 CCT-AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099460 5 + 173848474 CCT-AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906057 5 +   6154872 CCT-AG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74610036 6 + 122973662 CCTAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094507 6 + 172585720 CCTATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758227 6 - 170955103 CCTATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805733 6 -   2996164 CCTATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556830 6 +    766320 CCTAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012938 6 -  71996105 CCTAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195123 6 +    290775 CCTAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648250 6 -   3067355 CCTAAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           238778 6 -    242197 CCTAAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232427 6 -   1771730 CCTGAG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           124467 5 +  18854210 -cttag
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            51555 6 +    102524 CCTAAG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               112883 2770 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123 58 +  26524999 I
e aotNan1.NW_018509740v1     314112 360 -    457564 I
e calJac3.chrUn_GL286223      11931 315 +    132061 I

a score=60943.000000
s hg38.chr6_GL000254v2_alt   902327 8 +   4827813 CAAGTTGC
s panTro5.chr6             29865100 8 + 175400573 CAAGTTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099465 8 + 173848474 CAAGTTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906062 8 +   6154872 CAAGTTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74610042 8 + 122973662 CAAGTTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094513 8 + 172585720 CAAGTTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758233 8 - 170955103 CAAGTTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805739 8 -   2996164 CAAGTTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556836 8 +    766320 CAAGTTGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012944 8 -  71996105 CAAGTTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195129 8 +    290775 CAAGTTGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648256 8 -   3067355 CAAGTTGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           238784 8 -    242197 TCAATTGA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232433 8 -   1771730 ACAATTGA
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               115653 8 + 123392446 CAAGTTGC
i micMur3.chr6             I 2770 C 0
s otoGar3.GL873550           124472 7 +  18854210 ccacttg-
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            51561 8 +    102524 CAAGTTGC
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57942657 663 -  94987271 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123 58 +  26524999 I
e aotNan1.NW_018509740v1     314112 360 -    457564 I
e calJac3.chrUn_GL286223      11931 315 +    132061 I

a score=212812.000000
s hg38.chr6_GL000254v2_alt   902335 18 +   4827813 ATCAGTATAGCTAAAATC
s panTro5.chr6             29865108 18 + 175400573 ATCAGTATAGCTAAAATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099473 18 + 173848474 ATCAGTATAGCTAAAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906070 18 +   6154872 ATCAGTATAGCTAAAATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74610050 18 + 122973662 ATCAGTGTAGCTAAAATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094521 18 + 172585720 ATCAGTATAGCTAAAATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758241 18 - 170955103 ATCAGTATAGCTAAAATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805747 18 -   2996164 ATCAGTATAGCTAAAATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556844 18 +    766320 ATCAGTATAGCTAAAATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012952 18 -  71996105 ATCAGTATAGCTAAAATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195137 18 +    290775 ATCAGTATAGCTAAAATC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648264 18 -   3067355 ATCAGTATAGCTAAAATC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           238792 18 -    242197 ATCAGTATAGCTAAAATC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232441 18 -   1771730 ATCAGTATAGCTAAAATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     314472 18 -    457564 ATCAGTGTAGCCAAAATC
i aotNan1.NW_018509740v1   I 360 C 0
s micMur3.chr6               115661 18 + 123392446 ATCAGTATAGCCAAAATC
i micMur3.chr6             C 0 I 4473
s dasNov3.JH582591            51569 18 +    102524 ATCAGCATATCCAGAATC
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57942657 663 -  94987271 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123 58 +  26524999 I
e otoGar3.GL873550           124479  0 +  18854210 C
e calJac3.chrUn_GL286223      11931 315 +    132061 I

a score=185810.000000
s hg38.chr6_GL000254v2_alt   902353 20 +   4827813 TGTTACTTGTTTGGGAGGCA
s panTro5.chr6             29865126 20 + 175400573 TGTTACTTGTTTGGGAGGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099491 20 + 173848474 TGTTACTTGTTTGGGAGGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906088 20 +   6154872 TGTTACTTGTTTGGGAGGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74610068 20 + 122973662 TGTTACTTGTTTGGGAGGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094539 20 + 172585720 TGTTATTTGTTTGGGAGGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758259 20 - 170955103 TGTTATTTGTTTGGGAGGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805765 20 -   2996164 TGTTATTTGTTTGGGAGGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556862 20 +    766320 TGTTATTTGTTTGGGAGGCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012970 20 -  71996105 TGTTATTTGCTTGGGAGGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195155 20 +    290775 TGTTATTTGTTTGGGAGGCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648282 20 -   3067355 TGTTATTTGTTCGGGAGGCA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           238810 20 -    242197 TGTTATTTCTTTGGGCGGCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232459 20 -   1771730 TGTTATTTCTTCGGGCGGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     314490 20 -    457564 TGTTATTTCTTTGGGCAGCA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           124479  5 +  18854210 ---------------agcca
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            51587 20 +    102524 TGTTATTCATTTggggagca
i dasNov3.JH582591         C 0 I 106
e micMur3.chr6               115679 4473 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123 58 +  26524999 I
e calJac3.chrUn_GL286223      11931 315 +    132061 I

a score=265956.000000
s hg38.chr6_GL000254v2_alt   902373 29 +   4827813 GAGGCATTTG-AGGGTACAGACAAGGGCTC
s panTro5.chr6             29865146 29 + 175400573 GAGGCATTTG-AGGGTACAGACAAGGGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099511 29 + 173848474 GAGGCATTTG-AGGGTACAGACAAGGGCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906108 28 +   6154872 GAGGCATTTG-A-GGTACAGACAAGGGCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74610088 29 + 122973662 GAGGCATTTG-AGGGTACAGACAGGGGCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094559 29 + 172585720 GAGGCATTTG-AGGGTACAGACAGGGGCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758279 29 - 170955103 GAGGCATTTG-AGGGTACAGACAGGGGCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805785 29 -   2996164 GAGGCATTTG-AGGGTACAGACAGGGGCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556882 29 +    766320 GAGGCATTTG-AGGGTACAGACAGGGGCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29012990 29 -  71996105 GAGGCATTTG-AGGGTACAGACAGGGGCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195175 29 +    290775 GAGGCATTTG-AGGGTACAGACAGGGGCTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648302 29 -   3067355 GAGGCATTTG-AGGGTACAGATAGGGGCTC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           238830 29 -    242197 GAGGCATTTG-AGGGTACAGACAGGGGTTC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232479 30 -   1771730 GAGGCATTTGAAGGGTATGGACAGGGCCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     314510 29 -    457564 GAGGCATTTG-AGGGTACAGACAGGGGCTC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           124484  7 +  18854210 caggcgc-----------------------
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            51713 29 +    102524 GAGGCAGTTG-AGGGTGCTGCCAAGGGCCC
i dasNov3.JH582591         I 106 C 0
e micMur3.chr6               115679 4473 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123 58 +  26524999 I
e calJac3.chrUn_GL286223      11931 315 +    132061 I

a score=315343.000000
s hg38.chr6_GL000254v2_alt   902402 41 +   4827813 CAATTATGTTCATTATACAAACCACTCACCTTTTTCCACC----A
s panTro5.chr6             29865175 41 + 175400573 CAATTATGTTCATTATACAAACCACTCACATTTTTCCACC----A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099540 41 + 173848474 CAATTATGTTCATTATACAAACCACTCACATTTTTCCACC----A
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74610117 41 + 122973662 CAATTATATTCATTATACAAACCACTCACCTTTTTCCACC----A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094588 41 + 172585720 CAATTATATTCACTATACAAACCACTTACCTTTTTCCACC----A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758308 41 - 170955103 CAATTATATTCACTATACAAACCACTTACCTTTTTCCACC----A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805814 41 -   2996164 CAATTATATTCACTATACAAACCACTTACCTTTTTCCACC----A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556911 41 +    766320 CAATTATATTCACTATACAAACCACTTACCTTTTTCCACC----A
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013019 41 -  71996105 TAATTATATTCACTATACAAACCACTTACCTTTTTCCATC----A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195204 41 +    290775 CAATTATATTCACTATACAAACCACTTACCTTTTTCCACC----A
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648331 45 -   3067355 CAATTATATTCACTGTACAAACCACTTACCTTTTTCCACCAGTAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           238859 41 -    242197 TAATTATATTCACTCTACAAACCACTCACCTTTTTCCACC----A
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232509 41 -   1771730 TAATTACATTCACTCTACAAACCACTCACCTTTTTCCACC----A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     314539 41 -    457564 TAATTATATTCACTATACAAACCACTCACCTTGTTCCACC----A
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           124491 24 +  18854210 -----------------cgagccGAAAAACCTTTTTCAAC----A
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            51742 39 +    102524 CGATTCTACTCCTCATACAAGCCTCTTGCCTTTTCCTCC------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               115679 4473 + 123392446 I
e mm10.chr17               57942657 663 -  94987271 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123 58 +  26524999 I
e calJac3.chrUn_GL286223      11931 315 +    132061 I
e gorGor5.CYUI01015250v1    5906136  0 +   6154872 C

a score=621374.000000
s hg38.chr6_GL000254v2_alt   902443 70 +   4827813 GTAGCTACAACTTCCCCCTTTCACATCTTTTCATATTCCAATGTCACTGCCAGGATTCC-TGGCCA-TATTT
s panTro5.chr6             29865216 70 + 175400573 GTAGCTACAACTTCCCCCTTTCACATCTTTTCATATTCCAATGTCACTGCCAGGATTCC-TGGCCA-TATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099581 70 + 173848474 GTAGCTACAACTTCCCCCTTTCACATCTTTTCATATTCCAATGTCACTGCCAGGATTCC-TGGCCA-TATTT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74610158 70 + 122973662 GTAGCTGCAACTTCCCCCTTTCACATCTTTTCATATTCCAATGTCACTGCCAGGATTCT-TGGCCA-TATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094629 70 + 172585720 GTAGCTGCAACTTCCCCCTTTCACATATTTTCATACTCCAATGTCACTGCCAGGATTCC-TGGCCA-TATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758349 70 - 170955103 GTAGCTGCAACTTCCCCCTTTCACATATTTTCATACTCCAATGTCACTGCCAGGATTCC-TGGCCA-TATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805855 70 -   2996164 GTAGCTGCAACTTCCCCCTTTCACATATTTTCATACTCCAATGTCACTGCCAGGATTCC-TGGCCA-TATTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     556952 70 +    766320 GTAGCTGCAACTTCCCCCTTTCACATCTTTTCATACTCCAATGTCACTGCCAGGATTCC-TGGCCA-TATTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013060 70 -  71996105 GTAGCTGCAACTTCCCCCTTTCACATCTTTTCATACTCCAATGTCACTGCCAGGATTCT-TGGCCA-TATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195245 70 +    290775 GTAGCTGCAACTTCCCCCTTTCACATCTTTTCATACTCCAATGTCACTGCCAGGATTCC-TGGCCA-TATTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648376 70 -   3067355 GTAGCTGCAACTTACCCCTTTCACATCTTTTCATACTCCAATGTCACTGCCAGGATTCC-TGGCCA-TATTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           238900 70 -    242197 ATAGCCACAACTTCCCCCTTTCACATCTTTTCATCCTCCAATGTTACTGCCAGGATTCC-TGGCCA-TAGTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232550 60 -   1771730 GTAGCCACAACTTGCCCCTTTCACATCT----------CAATGTTACTGCCAGGATTCC-TGGCCA-TAGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     314580 70 -    457564 GTAGCCACAACTTCCTCCTTTCACATCTTTTCATCCTCCAATGTTACTGACAGGATTCC-TGGCCA-TAGTT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           124515 70 +  18854210 GTAGCTGCAATTT-CTCCTTTCAGCCCTTTCCATCCTTGAGTGTCACTTCCAAAATTCC-TAGTCAGTATTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57943320 71 -  94987271 gTAGCTGCCATTTCCTCCTTTCATACCTTTTCACCCTCCAGTATACTTTCCAGAGTTCCTTATCCA-TGTTC
i mm10.chr17               I 663 C 0
s dasNov3.JH582591            51781 55 +    102524 ----------CTTTCCACCTGCTTATCCTCCTAT----TAATACCAACTCCAGGATTCT-GGCCTT-TATT-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               115679 4473 + 123392446 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123 58 +  26524999 I
e calJac3.chrUn_GL286223      11931 315 +    132061 I
e gorGor5.CYUI01015250v1    5906136  0 +   6154872 C

a score=678738.000000
s hg38.chr6_GL000254v2_alt   902513  78 +   4827813 TTCAGGATATTTGTAGAGG-TCCTTCC-AGAACCA-CTACTTGAGTATCCTAATTTCATCCTCCCCACAA-------------------------------------------------------TCAATCTACTT
s panTro5.chr6             29865286  79 + 175400573 TTCAGGATATTTGTAGTGGTTCTTTCC-AGAACCA-CTACTTGAGTATCCTAATTTCATCCTCCCCACAA-------------------------------------------------------TCAGTCTACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099651  79 + 173848474 TTCAGGATATTTGTAGTGGTTCTTTCC-AGAACCA-CTACTTGAGTATCCTAATTTCATCCTCCCCACAA-------------------------------------------------------TCAGTCTACTT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74610228  78 + 122973662 TTCAGGGTATTTGTAGAGG-TCCTTCC-AGAACCA-CTACTTGAGTATCCTAATTTCATCCTCCCCACAA-------------------------------------------------------TCAGTCTACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094699  78 + 172585720 TTCAGGGTATTTATAAAGG-TCCTTCC-AGAACCA-CTACTTGAGCATCCTAATTTCATCCTCCCCACAG-------------------------------------------------------TCTACTTCCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758419  78 - 170955103 TTCAGGGTATTTATAAAGG-TCCTTCC-AGAACCA-CTACTTGAACATCCTAATTTCATCCTCCCCACAG-------------------------------------------------------TCTACTTCCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2805925  78 -   2996164 TTCAGGGTATTTATAAAGG-TCCTTCC-AGAACCA-CTACTTGAGCATCCTAATTTCATCCTCCCCACAG-------------------------------------------------------TCTACTTCCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557022  78 +    766320 TTCAGGGTATTTATAAAGG-TCCTTCC-AGAACCA-CTACTTGAGCATCCTAATTTCATCCTCCCCACAG-------------------------------------------------------TCTACTTCCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013130  78 -  71996105 TTCAGGGTATTTATAAAGG-TCCTTCC-AGAACCA-CTACTTGAGCATCCTAATTTTATCCTCCCCACAG-------------------------------------------------------TCTACTTCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195315  78 +    290775 TTCAGGGTATTTATAAAGG-TCCTTCC-AGAACCA-CTACTTGAGCATCCTAATTTCATCCTCCCCCCAG-------------------------------------------------------TCTACTTCCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648446  79 -   3067355 TTCAGGGTATTTATAAAGG-TCCTTCC-AGAACCACCTACTTGAGTATCCTAATTTCATCCTCCCCACAG-------------------------------------------------------TCAGTCTACTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12246  78 +    132061 TTCAGAGTATTTATAAAGG-TCCTTCC-GGAACCA-CTACTTGAGTATCCTAATTCTATCCTCCTCACAG-------------------------------------------------------TCTACTTTCTT
i calJac3.chrUn_GL286223   I 315 C 0
s saiBol1.JH378357           238970  78 -    242197 TTCAGAGTATTTACAAAGG-TCCTTCC-AGAGCCA-CTACTTGAGTATCCTAATTCTATCCTCCTCACAG-------------------------------------------------------TCTACTTTCTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232610  78 -   1771730 TTCAGAGTATTTATAAAGG-TCCTTCC-AGAACCA-CTACTTGAGTATCCTAATTCTATCCTCCTCACAG-------------------------------------------------------TCTACTTTCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     314650  78 -    457564 TTCAGAGTATTTATAAAGG-TCCTTCC-AGAACCA-CTACTTGAGTATCCTAATTCTATCCTCCTCACAG-------------------------------------------------------TTTACTTTCTT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           124585  77 +  18854210 CTTAGGCCTTTTATTCAGG-TCCTTCC-CTGACCT-CTACTTGGGTATCCTAACTCCAGCCTCCCAACAA-------------------------------------------------------CCAATGCACT-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57943391 124 -  94987271 CTCGGGACACTTGTTTAGA-TTCTTCCTCAAACCA-CCATGTG------TCAGCCCTGTTCTTCCCACAGATATTGTACCTAGCAGGAGATACGATGTCGGGAATGAATGTAGAGCCTTGAGCCCTCTACTT----
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            51836  71 +    102524 CTGAGAGCATTTACTAGGG-ATCCCCT-G----CA-CTGCTTCAGTACTGCAACCCCATACTCCCCACCC------------------------------------------------------CTCCACTT----
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               115679 4473 + 123392446 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123  58 +  26524999 I
e gorGor5.CYUI01015250v1    5906136   0 +   6154872 C

a score=1974663.000000
s hg38.chr6_GL000254v2_alt   902591 188 +   4827813 CCT--------------TCTTTTCCTTTT----ACATCAAGCACAAAACTTCTTTCCTCTGGAAGGATCCCCAGGCTTGATCCCATCCTTCT---CTCACTTCTGTACAATTTGTGCCTTTGGCAATGCCATCTCCTTTTGTAGTTTTTGACGGTTTTTCATAGAGATAGTGGAGTTCCTACTCAGATT-ACTGGAAAATGA-CAAATCTT
s panTro5.chr6             29865365 188 + 175400573 CCT--------------TCTTTTCCTTTT----ACATCAAGCGCAAAACTTCTTTCCTCTGGAAGGATCCCCAGGCTTGATCCCATCCTTCT---CTCACTTCTGTACAATTTGTGCCTTTGGCAATGCCATCTCCTTTTGTAGTTTTTGACGGTTTTTCATAGAGATAGTGGAGTTCCTACTCAGATT-ACTGGAAAATGA-CAAATCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099730 188 + 173848474 CCT--------------TCTTTTCCTTTT----ACATCAAGCGCAAAACTTCTTTCCTCTGGAAGGATTCCCAGGCTTGATCCCATCCTTCT---CTCACTTCTGTACAATTTGTGCCTTTGGCAATGCCATCTCCTTTTGTAGTTTTTGACGGTTTTTCATAGAGATAGTGGAGTTCCTACTCAGATT-ACTGGAAAATGA-CAAATCTT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74610306 188 + 122973662 CCT--------------TCTTTTCCTTTT----ACATCAAGCACAAAACTTCTTTCTTCTGGAAGGATCCCTGGGCTTGATCCCATCCTTCT---CTCACTTCTGTACAATTTATGCCTTTGGCAATGCCATCTCCTTTTGTAGTTTTTGACTGTTTTTCATAGAGATAGTGGAGTTCCTACTCAGATT-ACTGGAAAATGA-TGAATCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094777 202 + 172585720 CTTTTCCTTTTACATCATCTTTTCCTTTT----ACATCAAGTACACAACTTATTTCCTCTGGAAAGCTCCCCGGGCTTGATCCCATCGTTCT---CTCACTTCTGTAAAATTTGTACCTTTGGCAATATCATCTCCTTTTGCAGTTGTTGACTGTTTTTCATGGAGACAGTGGAGTTCCTACTCAGATT-ACTGGAAAATGA-CAAATCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758497 202 - 170955103 CTTTTCCTTTTACATCATCTTTTCCTTTT----ACATCAAGTACACAACTTATTTCCTCTGGAAAGCTCCCCGGGCTTGATCCCATCGTTCT---CTCACTTCTGTAAAATTTGTACCTTTGGCAATGTCATCTCCTTTTGCAGTTGTTGACTGTTTTTCATGGAGACAGTGGAGTTCCTACTCAGATT-ACTGGAAAATGA-CAAATCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806003 202 -   2996164 CTTTTCCTTTTACATCATCTTTTCCTTTT----ACATCAAGTACACAACTTATTTCCTCTGGAAAGCTCCCCGGGCTTGATCCCATCGTTCT---CTCACTTCTGTAAAATTTGTACCTTTGGCAATGTCATCTCCTTTTGCAGTTGTTGACTGTTTTTCATGGAGACAGTGGAGTTCCTACTCAGATT-ACTGGAAAATGA-CAAATCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557100 202 +    766320 CTTTTCCTTTTACATCATCTTTTCCTTTT----ACATCAAGTACACAACTTATTTCCTCTGGAAAGCTCCCTGGGCTTGATCCCATCGTTCT---CTCACTTCTGTAAAATTTGTACCTTTGGCAATGTCATCTCCTCTTGCAGTTTTTGACTGTTTTTCATGGAGACAGTGGAGTTCCTACTCAGATT-ACTGGAAAATGA-CAAATCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013208 202 -  71996105 CTTTTCCTTTTACATCATCTTTTCCTTTT----ACATCAAGTACACAATTTATTTCCTCTGGAAAGCTCCCTGGGCTTGATCCCATCGTTCT---CTCACTTCTGTAAAATTTGTACCTTTGGCAATGTCATCTCCTCTTGCAGTTTTTGACTGTTTTTCATGGAGACAGTGGAGTTCCTACTCAGATT-ACTGGAAAATGA-CAAATCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195393 202 +    290775 CTTTTCCTTTTACATCATCTTTTCCTTTT----ACATCAAGTACACAACTTATTTCCTCTGGAAAGCTCCCTGGGCTTGATCCCATCGTTCT---CTCACTTCTGTAAAATTTGTACCTTTGGCAATGTCATCTCCTCTTGCAGTTTTTGACTGTTTTTCATGGAGACAGTGGAGTTCCTACTCAGATT-ACTGGAAAATGA-CAAATCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648525 188 -   3067355 CCT--------------TCTTTTCCTTTT----ACATGAAGTACACAACTTATTTCCTCTGGAAAGCTCCCTGGGCTTGATCCCATTGTTCT---CTCACTTCTGTAAAATTTGTACCTTTGGCAATGTCATCTCCTCTTGCAGTTTTTGACTGTTTTTCATGGAGACAGTGGAGTTCCTACTCAGATT-ACTGGAAAATGA-CAAATCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12324 177 +    132061 CTT------------------------TT----CCATCAAGCACAAAACTTCTTTCCTCTGGAAAGCTGCCTGGGCTTGATCCCATCCTTCT---CTCACTTCTGTATAATTTGTGCC-TTGGCAATGCCATCTCCTTTTGCAGTTTTTGACTGTTTTTCATGGAGATAGTGGAGTTCCTACTCAGATT-ACTGGAGAATGA-CAAATCTT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           239048 177 -    242197 CTT------------------------TT----CCGTGAAGCATAAAACTTCTTTCCTCTGGAAAGCTGCCTGGGCTTGATCCCATCCTTCT---CTCACTTCTGTACAATTTGTGCC-TTGGCAATGCCATCTCCTTTTGCAGTTTTTGACTGTTTTTCGTGGAGATAGTGGAGTTCCTACTCAGATT-ACTGGAGAATGA-CAAATCTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232688 177 -   1771730 CTT------------------------TT----CCATCAAGCACAAAACTTCTTTCCTCTGGAAAGCTGCCTGGGCTTGATCCCATCCTTCT---CTCACTTCTGTACAATTTGTGCC-TTGGCAATGCCATCTCCTTTTGCAGTTTTTGACTGTTTTTCATGGAGATAGTGGCGTTCCTACTCAGATT-ACTAGAGAATGA-CAAATCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     314728 176 -    457564 CTT------------------------TT----CCATCAAGCACAAAACTTCTTTCCTCTGGAAAGCTGCCT-GGCTTGATCCCATCCTTCT---CTCACTTCTGTACAATTTGTGCC-TTGGCAATGCCATCTCCTTTTGCAGTTTCTGACTGTTTTTCATGGAGATAGTGGAGTTCCTACTCAGATT-ACTGGAGAATGA-CAAATCTT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               120152 190 + 123392446 CCT--------------TCTTTTCCCTCT----ACATCAAGCTCAAAAC-TCTCTCCTCTGGAAACTCTCCTGGGCTTAATCCCATCCTTCTTCCCTCACTTCCGTGCAATTTGTGCCTTTGAGGACGCCATCTCCTTTTGCAGTTTTTCACTGTTTTTCATGGAGATGGTAGTGTTCCTGTCCAGATT-ACCTGAGAATGA-CCAATCtt
i micMur3.chr6             I 4473 I 503
s otoGar3.GL873550           124662 191 +  18854210 CTT--------------TCTTTTCCTTCT----ACATCAAGCTCAAAACTTCTCTCCTCTGGAAAGGTCCTGGGGCTTGATCTCATCATTCTTCCCTCAATTCTATACAATTTGTGCCTTTGGCAATGCCAACTTTTTTTGTAATTTTTGACTGTTTTTCTTGGAGATAGTGGCACTCTTGCTCAGATT-ACCTAACAATGG-CCAAGCTT
i otoGar3.GL873550         C 0 I 3
s mm10.chr17               57943515 171 -  94987271 CCT--------------TCTTTTCCTTCTAAAAACAAAAAAAGCAAAA---GCTTCTACAGGTGAGCCT-----------TTGCAATGCTAC---CTCCTTTGTGTAGTTTTTGTTTGTTtg------ttctgttctgttctgttttgttACCATTTTCCATGGAAA--GAGGCGTTTCTACTCAGATTCCCTATGGAATGG-CCAACCTT
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            51907 176 +    102524 --------------------CCTCCTTCC----ACACCAAGCACAAAAC-TCCCTCTTCTGGAGGAACCT---GACTTGAGCCCATCCTCGCTA-CCTTCCCCTGTGCTGTTTGTGCTTTGGGCAGTTCCA---CCTTCTGCAACTTTTGACGGGTTTTTTTGG-GATGGTGGACTTCCTGTTCAGATT-A-GGGAGGATGAGCAGATCTC
i dasNov3.JH582591         C 0 I 3
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123  58 +  26524999 I
e gorGor5.CYUI01015250v1    5906136   0 +   6154872 C

a score=115332.000000
s hg38.chr6_GL000254v2_alt   902779 10 +   4827813 ATTCATTTTA
s panTro5.chr6             29865553 10 + 175400573 ATTCATTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099918 10 + 173848474 ATTCATTTTA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74610494 10 + 122973662 ATTCATTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094979 10 + 172585720 ATTCATTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758699 10 - 170955103 ATTCATTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806205 10 -   2996164 ATTCATTTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557302 10 +    766320 ATTCATTTTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013410 10 -  71996105 ATTCATTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195595 10 +    290775 ATTCATTTTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648713 10 -   3067355 ATTCATTTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12501 10 +    132061 ACTCATTTTA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           239225 10 -    242197 ATTCATTTTA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232865 10 -   1771730 ATTCATTTTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     314904 10 -    457564 ATTCATTTTA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           124856 10 +  18854210 GTTCACTTTA
i otoGar3.GL873550         I 3 C 0
s mm10.chr17               57943686 10 -  94987271 CTTCTTTATC
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            52086 10 +    102524 CTTCATTTTA
i dasNov3.JH582591         I 3 C 0
e micMur3.chr6               120342 503 + 123392446 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123 58 +  26524999 I
e gorGor5.CYUI01015250v1    5906136  0 +   6154872 C

a score=15051.000000
s hg38.chr6_GL000254v2_alt   902789 2 +   4827813 GT-
s panTro5.chr6             29865563 2 + 175400573 GT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099928 2 + 173848474 GT-
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74610504 2 + 122973662 GT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094989 2 + 172585720 GT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758709 2 - 170955103 GT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806215 2 -   2996164 GT-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557312 2 +    766320 GT-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013420 2 -  71996105 GT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195605 2 +    290775 GT-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648723 2 -   3067355 GT-
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378357           239235 2 -    242197 GT-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232875 2 -   1771730 GT-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     314914 2 -    457564 GT-
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           124866 2 +  18854210 AT-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57943696 2 -  94987271 GT-
i mm10.chr17               C 0 I 3
s dasNov3.JH582591            52096 2 +    102524 -TT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123 58 +  26524999 I
e calJac3.chrUn_GL286223      12511 0 +    132061 C
e gorGor5.CYUI01015250v1    5906136 0 +   6154872 C

a score=43089.000000
s hg38.chr6_GL000254v2_alt   902791 7 +   4827813 TCCCATA
s panTro5.chr6             29865565 7 + 175400573 TCCCATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099930 7 + 173848474 TCCCATA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74610506 6 + 122973662 TCCCGT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094991 7 + 172585720 TCCCATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758711 7 - 170955103 TCCCATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806217 7 -   2996164 TCCCATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557314 7 +    766320 TCCCATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013422 7 -  71996105 TCCCATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195607 7 +    290775 TCCCATA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648725 7 -   3067355 TCCCATA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           124868 7 +  18854210 TCTCATA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57943701 7 -  94987271 TCCCAAA
i mm10.chr17               I 3 C 0
s dasNov3.JH582591            52098 7 +    102524 TCCTGCA
i dasNov3.JH582591         C 0 I 42
e micMur3.chr6               120342 503 + 123392446 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123 58 +  26524999 I
e saiBol1.JH378357           239237 0 -    242197 C
e aotNan1.NW_018509740v1     314916 0 -    457564 C
e cebCap1.NW_016107755v1     232877 0 -   1771730 C
e calJac3.chrUn_GL286223      12511 0 +    132061 C
e gorGor5.CYUI01015250v1    5906136 0 +   6154872 C

a score=-10867.000000
s hg38.chr6_GL000254v2_alt   902798 4 +   4827813 Cttt
s panTro5.chr6             29865572 4 + 175400573 Cttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099937 4 + 173848474 CTTT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74610512 4 + 122973662 Cttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094998 1 + 172585720 C---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758718 1 - 170955103 C---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806224 1 -   2996164 C---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557321 1 +    766320 C---
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013429 1 -  71996105 C---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195614 1 +    290775 C---
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648732 1 -   3067355 C---
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           124875 4 +  18854210 CTTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57943708 4 -  94987271 TTCT
i mm10.chr17               C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e dasNov3.JH582591            52105 42 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123 58 +  26524999 I
e saiBol1.JH378357           239237 0 -    242197 C
e aotNan1.NW_018509740v1     314916 0 -    457564 C
e cebCap1.NW_016107755v1     232877 0 -   1771730 C
e calJac3.chrUn_GL286223      12511 0 +    132061 C
e gorGor5.CYUI01015250v1    5906136 0 +   6154872 C

a score=19451.000000
s hg38.chr6_GL000254v2_alt   902802 6 +   4827813 cttttt
s panTro5.chr6             29865576 6 + 175400573 cttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099941 5 + 173848474 C-TTTT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74610516 5 + 122973662 c-tttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30094999 4 + 172585720 --TTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758719 4 - 170955103 --TTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806225 4 -   2996164 --TTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557322 4 +    766320 --TTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013430 4 -  71996105 --TTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195615 4 +    290775 --TTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648733 4 -   3067355 --TTTT
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57943712 6 -  94987271 CCTTCT
i mm10.chr17               C 0 I 1415
e micMur3.chr6               120342 503 + 123392446 I
e dasNov3.JH582591            52105 42 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123 58 +  26524999 I
e saiBol1.JH378357           239237 0 -    242197 C
e otoGar3.GL873550           124879 0 +  18854210 C
e aotNan1.NW_018509740v1     314916 0 -    457564 C
e cebCap1.NW_016107755v1     232877 0 -   1771730 C
e calJac3.chrUn_GL286223      12511 0 +    132061 C
e gorGor5.CYUI01015250v1    5906136 0 +   6154872 C

a score=63516.000000
s hg38.chr6_GL000254v2_alt   902808 34 +   4827813 ttttaataatttttattttttattcttatttatt
s panTro5.chr6             29865582 34 + 175400573 ttaaaataatttttattttttattcttatttatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099946 34 + 173848474 TTAAAATAATTTTTATTTTTTATTCTTATCTATT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74610521 34 + 122973662 tttaaataatttttattttttattcttatttatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095003 22 + 172585720 TTAAAATTAttttta-tttttat-----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758723 22 - 170955103 TTAAAATTAttttta-tttttat-----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806229 22 -   2996164 TTAAAATTAttttta-tttttat-----------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557326 22 +    766320 TAAAAATTAttttta-tttttat-----------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013434 32 -  71996105 TAAAAAttattttta-tttttatt-ttatttatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195619 22 +    290775 TAAAAATTAttttta-tttttat-----------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648737 23 -   3067355 TAAAAATTATTtttattttttat-----------
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            52105 42 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123 58 +  26524999 I
e saiBol1.JH378357           239237  0 -    242197 C
e otoGar3.GL873550           124879  0 +  18854210 C
e aotNan1.NW_018509740v1     314916  0 -    457564 C
e cebCap1.NW_016107755v1     232877  0 -   1771730 C
e calJac3.chrUn_GL286223      12511  0 +    132061 C
e gorGor5.CYUI01015250v1    5906136  0 +   6154872 C

a score=494410.000000
s hg38.chr6_GL000254v2_alt   902842 129 +   4827813 tatttttattttatttatttattta-------ttttttgagac--agtctcacactgt-cgcccgggctggagtgcagtggcg-------cgatctcgctcac-------tgcaacctctgcctc--------ctgggttcaagcaattctcttgcctcag
s panTro5.chr6             29865616 131 + 175400573 tatttttattttatttatttattta-------ttttttgagacagagtctcacactgt-cgcccaggctggagtgcagtggcg-------cgatctcgctcac-------tgcaacctctgcctc--------ctgggttcaagcaattctcttgcctcag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30099980 131 + 173848474 TAtttttattttatttatttattta-------ttttttgagacagagtctcacacggt-cgcccaggctggagtgcagtggcg-------cgatctcgctcac-------tgcaacctctgcctc--------ctgggttcaagcaattctcttgcctcag
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74610555 117 + 122973662 tatttttattttatttatgtattta-------ttttttgagacagagtctcacactgt-cgcctg--------------ggcg-------cgatctcgctcac-------tgcaacctctgcctc--------ctgagttcaagcaattctcttgcctcag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095025 115 + 172585720 -------------tttatttattta----------tttgagacagagtctcacactgt-catccaggctggagtgcagtggtg-------cgagctcactcac-------tgcagcctctgcctt--------ctgggttcaagcaattatcttgcctcag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758745 115 - 170955103 -------------tttatttattta----------tttgagacagagtctcacactgt-catccaggctggagtgcagtggtg-------cgagctcactcac-------tgcagcctctgcctt--------ctgggttcaagcaattatcttgcctcag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806251 115 -   2996164 -------------tttatttattta----------tttgagacagagtctcacactgt-catccaggctggagtgcagtggtg-------cgagctcactcac-------tgcagcctctgcctt--------ctgggttcaagcaattatcttgcctcag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557348 115 +    766320 -------------tttatttattta----------tttgagacagagtctcacactgt-catccaggctggagtgcagtggtg-------cgagcgagctcac-------tgcaacctctgccct--------ctgggttcaagcaattatcttgcctcag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013466 125 -  71996105 tattt---atttatttatttattta----------tttgagacagagtttcacactgt-catccaggctggagtgcagtggtg-------caagcttactcac-------tgcaacctctgcctt--------ctgggttcaagcaattatcttgcctcag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195641 115 +    290775 -------------tttatttattta----------tttgagacagagtctcacactgt-catccaggctggagtgcagtggtg-------cgagcgagctcac-------tgcaacctctgccct--------ctgggttcaagcaattatcttgcctcag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648760 118 -   3067355 ----------ttatttatttattta----------tttgagacagagtctcacactgt-catccaggctggagtgcagtggtg-------cgatctcactcac-------tgcaacccctgcctt--------ctgggttcaagcaattatcttgcctcag
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH582591            52147 156 +    102524 TACTCTTTTTTCCTGTCTTTttttatagcagttttattgagctatattcacgtaccatacaatctacccaaagtgtacagttgatggcttttagcataatcacggtgttgtgcaTTCCTTGCTTCAAAAAAAACTGG-----AACAATTTCCTtactccaa
i dasNov3.JH582591         I 42 I 368
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123  58 +  26524999 I
e saiBol1.JH378357           239237   0 -    242197 C
e otoGar3.GL873550           124879   0 +  18854210 C
e aotNan1.NW_018509740v1     314916   0 -    457564 C
e cebCap1.NW_016107755v1     232877   0 -   1771730 C
e calJac3.chrUn_GL286223      12511   0 +    132061 C
e gorGor5.CYUI01015250v1    5906136   0 +   6154872 C

a score=827090.000000
s hg38.chr6_GL000254v2_alt   902971 179 +   4827813 cctcctgagtagctgggaattaccggtgccccaccaccacgcccagctaattttttgtatttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcatgatctgcctgcctcagcctcccaaagtgctgggattacaggcatgagccac--------ggggcctg
s panTro5.chr6             29865747 179 + 175400573 cctcctgagtagctgggaattaccagcgccccaccaccacgcccagctaattttttgtatttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcatgatctgcccgcctcggcctcccaaagtgctgtgattacaggcatgagccac--------ggggcctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30100111 179 + 173848474 cctcctgagtagctgggaattaccggcgccccaccaccacgccaagctaattttttgtatttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcatgatctgcccgcctcggcctcccaaagtgctgtgattacaggcatgagccac--------ggggcctg
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74610672 186 + 122973662 cctcctgagtagctgggaattacaggcg-cccaccaccacgcccagctaattttttgtatttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgaccccatgatccgcccgcctcggcctcccaaagtgctgggattacaggcatgagccaccAGGATTACAGGCCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095140 177 + 172585720 tctcctgagtagctggg-attacaggcg-cccaccaccactcccagctaattttttgtatttttagtggagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcatgatccgcctgccttggcctcccaaagtgctgggattacaggtgtgagccac--------cgggccca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29758860 177 - 170955103 tctcctgagtagctggg-attacaggtg-cccaccaccactcccagctaattttttgtatttttagtggagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcatgatccgcctgccttggcctcccaaagtgctgggattacaggtgtgagccac--------caggccca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806366 177 -   2996164 tctcctgagtagctggg-attacaggcg-cccaccaccactcccagctaattttttgtatttttagtggagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcatgatccgcctgccttggcctcccaaagtgctgggattacaggtgtgagccac--------tgggccca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557463 177 +    766320 tctcctgagtagctggg-attacaggcg-cccgccgccactcccagctaattttttgtatttttagtggagatagggtttcaccatgttggccaggctggtctcaaactcctgacctcatgatccgcctgccttggcctcccaaagtgctgggattacaggtgtgagccac--------cgggccca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013591 177 -  71996105 tctcctgagtaggtggg-attacaggcg-cccaccaccactcccagctaattttttgtatttttagtggagacggggtttcaccgtgttggccaggctggtctcaaactcctgacctcatgatccgcctgccttggcctcccaaagtgctgggattacaggtgtgagccac--------cgggccca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195756 177 +    290775 tctcctgagtagctggg-attacaggcg-cccaccgccactcccagctaattttttgtatttttagtggagatagggtttcaccatgttggccaggctggtctcaaactcctgacctcatgatccgcctgccttggcctcccaaagtgctgggattacaggtgtgagccac--------cgggccca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2648878 177 -   3067355 tctcctgagtagctggg-attacgggca-cccaccaccactcccagctaattttttgtatttttagtggagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcatgatccacctgccttggcctcccaaagtgctgggattacaggtgtgagccac--------tggacccg
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            52303 368 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123  58 +  26524999 I
e saiBol1.JH378357           239237   0 -    242197 C
e otoGar3.GL873550           124879   0 +  18854210 C
e aotNan1.NW_018509740v1     314916   0 -    457564 C
e cebCap1.NW_016107755v1     232877   0 -   1771730 C
e calJac3.chrUn_GL286223      12511   0 +    132061 C
e gorGor5.CYUI01015250v1    5906136   0 +   6154872 C

a score=16918.000000
s hg38.chr6_GL000254v2_alt   903150 3 +   4827813 gcc
s panTro5.chr6             29865926 3 + 175400573 gcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30100290 3 + 173848474 gcc
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74610858 3 + 122973662 GCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095317 3 + 172585720 gcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759037 3 - 170955103 gcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806543 3 -   2996164 gcc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557640 3 +    766320 gcc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013768 3 -  71996105 gcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195933 3 +    290775 gcc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649055 3 -   3067355 gcc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12511 3 +    132061 GTT
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            52303 368 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123 58 +  26524999 I
e saiBol1.JH378357           239237 0 -    242197 C
e otoGar3.GL873550           124879 0 +  18854210 C
e aotNan1.NW_018509740v1     314916 0 -    457564 C
e cebCap1.NW_016107755v1     232877 0 -   1771730 C
e gorGor5.CYUI01015250v1    5906136 0 +   6154872 C

a score=94081.000000
s hg38.chr6_GL000254v2_alt   903153 10 +   4827813 TCCCATACTT
s panTro5.chr6             29865929 10 + 175400573 TCCCATACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30100293 10 + 173848474 TCCCATACTT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74610861 10 + 122973662 TCCCATACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095320 10 + 172585720 TCCCATACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759040 10 - 170955103 TCCCATACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806546 10 -   2996164 TCCCATACTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557643 10 +    766320 TCCCATACTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013771 10 -  71996105 TCCCATACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195936 10 +    290775 TCCCATACTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649058 10 -   3067355 TCCCATACTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12514 10 +    132061 TTTCATACTT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           239237 10 -    242197 TCTCATACTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232877 10 -   1771730 TCCCATACTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     314916 10 -    457564 TCCCATACTT
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            52303 368 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e canFam3.chr35            26241123 58 +  26524999 I
e otoGar3.GL873550           124879  0 +  18854210 C
e gorGor5.CYUI01015250v1    5906136  0 +   6154872 C

a score=77410.000000
s hg38.chr6_GL000254v2_alt   903163 8 +   4827813 TCTTTCTA
s panTro5.chr6             29865939 8 + 175400573 TCTTTCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30100303 8 + 173848474 TCTTTCTA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74610871 8 + 122973662 TCTTTCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095330 8 + 172585720 TCTTTCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759050 8 - 170955103 TCTTTCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806556 8 -   2996164 TCTTTCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557653 8 +    766320 TCTTTCTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013781 8 -  71996105 TCTTTCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195946 8 +    290775 TCTTTCTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649068 8 -   3067355 TCTTTCTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12524 8 +    132061 CCTTTCCA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           239247 8 -    242197 TCTTTCCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232887 8 -   1771730 TCTTTCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     314926 8 -    457564 TCTTTCCA
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26241181 8 +  26524999 TCCTCCCA
i canFam3.chr35            I 58 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            52303 368 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e otoGar3.GL873550           124879 0 +  18854210 C
e gorGor5.CYUI01015250v1    5906136 0 +   6154872 C

a score=43601.000000
s hg38.chr6_GL000254v2_alt   903171 4 +   4827813 CTTC
s panTro5.chr6             29865947 4 + 175400573 CTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30100311 4 + 173848474 CTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906136 4 +   6154872 CTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74610879 4 + 122973662 CTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095338 4 + 172585720 CCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759058 4 - 170955103 CCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806564 4 -   2996164 CCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557661 4 +    766320 CCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013789 4 -  71996105 CCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195954 4 +    290775 CCTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649076 4 -   3067355 CCTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12532 4 +    132061 CTTC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           239255 4 -    242197 CTTC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232895 4 -   1771730 CTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     314934 4 -    457564 CTTC
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26241189 4 +  26524999 CTTC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            52303 368 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I
e otoGar3.GL873550           124879 0 +  18854210 C

a score=183734.000000
s hg38.chr6_GL000254v2_alt   903175 17 +   4827813 CTTTTCTCTCTTCTGCC
s panTro5.chr6             29865951 17 + 175400573 CTTTTCTCTCTTCTGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30100315 17 + 173848474 CTTTTCTCTCTTCTGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906140 17 +   6154872 CTTTTCTCTCTTCTGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74610883 17 + 122973662 ATTTTCTCTCTTCTGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095342 17 + 172585720 CTTTCCTCTCTTCTGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759062 17 - 170955103 CTTTCCTCTCTTCTGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806568 17 -   2996164 CTTTCCTCTCTTCTGCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557665 17 +    766320 CTTTCCTCTCTTCTGCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013793 17 -  71996105 CTTTCCTCTCTTCTGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195958 17 +    290775 CTTTCCTCTCTTCTGCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649080 17 -   3067355 CTTTCCTCTCTTCTGCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12536 17 +    132061 CTTTTTTTTCTTCTGCC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           239259 17 -    242197 CTTTTTTTTCTTCTGCC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232899 14 -   1771730 C---TTTTTCTTCTGCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     314938 17 -    457564 CCTTTTTTTCTTCTGCC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           124879 17 +  18854210 CTTTCCTGTCTTTTGCC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26241193 16 +  26524999 CCTTCCCGTCTTCT-CC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            52303 368 +    102524 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I

a score=316076.000000
s hg38.chr6_GL000254v2_alt   903192 26 +   4827813 TCATCTTCCATCCATCCCTGAGAGCA
s panTro5.chr6             29865968 26 + 175400573 TCATCTTCCATCCATCCCTGAGAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30100332 26 + 173848474 TCATCTTCCATCCATCCCTGAGAGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906157 26 +   6154872 TCATCTTCCATCCATCCCTGAGAGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74610900 26 + 122973662 TCATCTTCCACCCATCCCTGAGAGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095359 26 + 172585720 TCATCTTCCATCCATCCCTGAGAACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759079 26 - 170955103 TCATCTTCCATCCATCCCTGAGAACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806585 26 -   2996164 TCATCTTCCATCCATCCCTGAGAACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557682 26 +    766320 TCATCTTCCATCCATCCCTGAGAACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013810 26 -  71996105 TCATCTTCCATCCATCCCTGAGAACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     195975 26 +    290775 TCATCTTCCATCCATCCCTGAGAACA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649097 26 -   3067355 TCATCTTCCATCCATCTCTAAGAACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12553 26 +    132061 TCATCTTCCATTCATGCCTGAGGACA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           239276 26 -    242197 TCATCTTCCATCCACCCCTGAGAGCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232913 26 -   1771730 TCATCTTCCATCCACCCCTGAGAGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     314955 26 -    457564 TCATCTTCCATCCACCCCTGAGAGCA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           124896 26 +  18854210 TTATCTTCTGCCCACCCCTGAGAACA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26241209 26 +  26524999 TCACCTTATGCCCAACACTGAGAGTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            52671 17 +    102524 CTACTCTCCTTCCACCC---------
i dasNov3.JH582591         I 368 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e proCoq1.NW_012152574v1     608179 1471 +    730504 I

a score=781240.000000
s hg38.chr6_GL000254v2_alt   903218 58 +   4827813 TATAGCCCAGAATTTAACACTCTGGGAGCCCTGAAAACATATTAACC----------------AACGTAGTTCA
s panTro5.chr6             29865994 58 + 175400573 TATAGCCCAGAATTTAACACTCTGGGAGCCCTGAAAACATATTAACC----------------AACGTAGTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30100358 58 + 173848474 TATAGCCCAGAATTGAACACTCTGGGAGCCCTGAAAACATATTAACC----------------AACGTAGTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906183 57 +   6154872 TATAGCCCAGAATTTAACACTCTGGGAG-CCTGAAAACATATTAACC----------------AACGTGGTTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74610926 58 + 122973662 TATAGCCCAGAATTTAACACTCTGGGAGCCCTGAAAACGTATTAACC----------------AACGTAGTTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095385 58 + 172585720 TATAGCCCAGAATTTAACACACTGGGAGCCCTGAAAACatattaacc----------------aatgtagttca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759105 58 - 170955103 TATAGCCCAGAATTTAACACACTGGGAGCCCTGAAAACATATTAACC----------------AATGTAGTTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806611 58 -   2996164 TATAGCCCAGAATTTAACACACTGGGAGCCCTGAAAACatattaacc----------------aatgtagttca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557708 58 +    766320 TATAGCCCAGAATTTAACACACTGGGAGCCCTGAAAACatattaacc----------------aatgtagttca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013836 73 -  71996105 TA-AGCCCAGAATTTAACACGCTGGGAGCCCTGAAAACATATTAACCAAAACTACATTAACCAAATGTAGTTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196001 58 +    290775 TATAGCCCAGAATTTAACACACTGGGAGCCCTGAAAACATATTAATC----------------AATGTAGTTCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649123 58 -   3067355 TATAGCCCAGAATTTAACACACTGGGAGCCCTGAAAACatattaacc----------------aacgtagttca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12579 58 +    132061 TACAGCCCAGAATTTAACACTCTGGGAGCCCTGAAAACATATTAACC----------------AAAGTAGTTCA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           239302 58 -    242197 TATAGCCCAGAATTTAACACCCTGGGAGCCCTGAAAACATATTAACA----------------AAAGTAGTTCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232939 58 -   1771730 TATAGCCCAGAATTTAGCACCCTGGGAGCCCTGAAAACGTATTAACA----------------AAAGTAGTTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     314981 58 -    457564 TATAGCCCAGAATTTAACACTCTGGGAGCCCTGAAAACATATTAACC----------------AAAGTAGTTCA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     609650 58 +    730504 TATAGCTCAGAATGTAACACCCCGAGAGCCCTGAAAACACAGTAACC----------------AAAGTAGCTCA
i proCoq1.NW_012152574v1   I 1471 I 124
s otoGar3.GL873550           124922 58 +  18854210 CATAGCCCAACAGATAACACTTTGAAAGTCCTGGACACACATTAACC----------------AAAGTAACTCG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26241235 58 +  26524999 TAGAGCCCAGAACTTAATAGCTCACATGCCCTGAAAACATATTAACC----------------AAAGTAGCCCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            52688 54 +    102524 ---ACCCCAGAACGTAATGCCCAGGGAGCCCTGAAAAGCTATT-ACA----------------GAAATAGCTTA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I

a score=1246219.000000
s hg38.chr6_GL000254v2_alt   903276 116 +   4827813 CTTGATTGATGATcaggtagatgctaggtacattttgggag-----tatctcattaaattctcacctaaccacacagagtggatattcatgttc-t--atact-gagcctagtaaactaccattt
s panTro5.chr6             29866052 116 + 175400573 CTTGATTGATGATcaggtagatgctaggtacattttgggag-----tatctcattaaattctcacctaaccacacagagtggatattcatgttc-t--atact-gagcctagtaaactaccattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30100416 116 + 173848474 CTTGATTGATGATcaggtagatgctaggtacattttgggag-----tatctcattaaattctcacctaaccacacagagtggatattcatgttc-t--atact-gagcctagtaaactaccattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906240 116 +   6154872 CTTGATTGATGATcaggtagatgctaggtacattttgggag-----tatctcattaaattctcacctaaccacacagagtggatattcatgttc-t--atact-gagcctagtaaactaccattt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74610984 116 + 122973662 CTttattgatgatcaggtagatgccaggtgcattttgggag-----tatctcattaaattctcacctaaccacacagagtggatattcatgttc-t--atact-gagcctagtaaactaccattt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095443 116 + 172585720 atttactgatgatcatgtagatgctaggtgcattttgtggg-----tatctcattaaattctcacctaaccacacagagtggttattcatgttc-t--atact-gagcctagtaaactaccattt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759163 116 - 170955103 ATTTACTGATGATCATGTAGAtgctaggtgcattttgtggg-----tatctcattaaattctcacctaaccacacagagtggttattcatgttc-t--atact-gagcctagtaaactaccattt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806669 116 -   2996164 atttactgatgatcatgtagatgctaggtgcattttgtggg-----tatctcattaaattctcacctaaccacacagagtggttattcatgttc-t--atact-gagcctagtaaactaccattt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557766 116 +    766320 atttactgatgatcatgtagatgctaggtgcattttgtggg-----tatctcattaaattctcacctaaccacacagagtggttattcatgttc-t--atact-gagcctagtaaactaccattt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29013909 116 -  71996105 ATTTACTGATGATCATGTAGAtgctaggtgcattttgtggg-----tatctcattaaattctcacctaaccacacagagtggttattcatgttc-t--ataat-gagcctagtaaactaccattt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196059 116 +    290775 ATTTACTGATGATCATGTAGAtgctaggtgcattttgtggg-----tatctcattaaattctcacctaaccacacagagtggttattcgtgttc-t--atact-gagcctagtaaactaccattt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649181 116 -   3067355 atttactgatgatcatgtagatactagatgcattttgtggg-----tatctcattaaattctcacctaaccacacagagtggttattcatgttc-t--atact-gagcctagtaaactaccattt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12637 108 +    132061 ATATATTGATAATCACCTAGCTAATAAGTGCATTTTGGGGG-----tatctcattaaattctcacctaa--------aatggatattcatgttc-t--atact-gaacctagtaaactaccattt
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           239360 121 -    242197 ATGTATTGATGATCAGCTAGATAATAGTTGCATTTTTGGGGGTATCtatctcattaaattctcacctaaccacacagagtggatattcacgttc-t--atact-gaacctagtgaactaccattt
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     232997 115 -   1771730 ATGTATTGATGATCAGCTAG-TAATAGGTGTCTTTTGGGGG-----tatctcattaaattctcacctaaccacacagagtggatattcacgttc-t--atact-gaacctagtaaactaccattt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315039 116 -    457564 ATATATTGATAATCAGCTAGATAACAGGTGCATTTTGGGGG-----tatctcattaaattctcacctaaccacagaaagtggatattcacgttc-t--atact-gaacctagtaaactaccattt
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           124980 113 +  18854210 AATTGTAGATGATCTGCTAGGTACTAGGTGCTCTTCAAGGG-----TATCT-----AGTTTGAACCTTGCAAAGTATTATAGATATTTAAGTCCTT--AGACTGGAGATGAATAAACTATGATTT
i otoGar3.GL873550         C 0 I 284
s canFam3.chr35            26241293 117 +  26524999 GTTAAGTGCTGGTTGGCTGAGTGCCAGGTGCTTTCGGAGGG-----CATCCAACTGAATTCTCGCCCAGCCACACAAAGTAGATG-TAATGTCC-TTAGTATG-CAGCCCCCTAAACGGTGATTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            52742 115 +    102524 -AGtaccgaggatctgctagatgccaggtgc-tctcggggg-----tgtccagtttaactctcacaccaccatgca-aatggacattaatgttcct--attttggagctgagtaaactgcaattt
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e proCoq1.NW_012152574v1     609708 124 +    730504 I

a score=103896.000000
s hg38.chr6_GL000254v2_alt   903392 9 +   4827813 aaagaaagt
s panTro5.chr6             29866168 9 + 175400573 aaagaaagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30100532 9 + 173848474 aaagaaagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906356 9 +   6154872 aaagaaagt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74611100 9 + 122973662 aaagaaagt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095559 9 + 172585720 aaagaaagt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759279 9 - 170955103 aaagaaagt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806785 9 -   2996164 aaagaaagt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557882 9 +    766320 aaagaaagt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014025 9 -  71996105 aaagaaagt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196175 9 +    290775 aaagaaagt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649297 9 -   3067355 aaagaaagt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12745 9 +    132061 aaagaaagt
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           239481 5 -    242197 aaaga----
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     233112 9 -   1771730 aaagaaaat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315155 9 -    457564 aaagaaagt
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           125377 9 +  18854210 aaagaaagt
i otoGar3.GL873550         I 284 C 0
s canFam3.chr35            26241410 8 +  26524999 GGGGAAAC-
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            52857 9 +    102524 aaagaaaat
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e proCoq1.NW_012152574v1     609708 124 +    730504 I

a score=1673147.000000
s hg38.chr6_GL000254v2_alt   903401 124 +   4827813 aagaagc-aaatcagaggt------------------cacacagctataaagctgacagagccaacatttgaacttaagttcgttaccctattttcaaattctttctactgcaTTGAGAGGCTTAGTTTTGAGGCACTTCTCT
s panTro5.chr6             29866177 124 + 175400573 aagaagc-aaatcagaggt------------------cacacagctataaagctgacagagccaacatttgaacttaagttcgttgccctattttcaaattctttctactgcaTTGAGAGGCTTAGTTTTGAGGCACTTCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30100541 124 + 173848474 aagaagc-aaatcagaggt------------------cacacagctataaagctgacagagccaacatttgaacttaagttcgttgccctattttcaaattctttctactgcaTTGAGAGGCTTAGTTTTGAGGCACTTCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906365 124 +   6154872 aagaagc-aaatcagaggt------------------cacacagctgtaaagctgacagagccaacatttgaacttaagttcgttgccctattttcaaattctttctactgcaTTGAGAGGCTTAGTTTTGAGGCACTTCTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74611109 124 + 122973662 aagaagc-aaatcagaggt------------------cacgcagctataaagatgacagagccaacatttgaacttaagctcactgccctattttcaaattctttctattgcaTTGAGAGGCTTAGTTCTGAGGCACTTCTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095568 124 + 172585720 aagaagc-aaatcagaggt------------------cacacagctataaagctgacagagccaaaatttgcacttaagttcactgcactattcccaaattctttctattgcaTTGAGAGGCTTAGTTTTGAGGCGCTTCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759288 124 - 170955103 aagaagc-aaatcagaggt------------------cacacagctataaagctgacagagccaaaatttgcacttaagttcactgcactattcccaaattctttctattgcaTTGAGAGGCTTAGTTTTGAGGCGCTTCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806794 124 -   2996164 aagaagc-aaatcagaggt------------------cacacagctataaagctgacagagccaaaatttgcacttaagttcactgcactattcccaaattctttctattgcaTTGAGAGGCTTAGTTTTGAGGCGCTTCTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     557891 124 +    766320 aagaagc-aaatcagaggt------------------cacacagctataaagctgacagagccaaaatttgcacttaagttcactgcactattcccaaattctttctattgcaTTGAGAGGCTTAGTTTTGAGGCACTTCTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014034 124 -  71996105 aagaagc-aaatcagaggt------------------cacacagctataaagctgacagagccaaaatttgcgcttaagttcactgcactattcccaaattctttctattgcaTTGAGAGGCTTAGTTTTGAGGCGCTTCTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196184 124 +    290775 aagaagc-aaatcagaggt------------------cacacagctgtaaagctgacagagccaaaatttgcacttaagttcactgcactattcccaaattctttctattgcattaAGAGGCTTAGTTTTGAGGCACTTCTCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649306 124 -   3067355 tagaagc-aaatcagaggt------------------cacacagctataaagctgacagagccaaaatttgcacttaagttcactgcactatttccaaattctttctattgcaTTGAGAGGCTTAGTTTTGAGGCGCTTCTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12754 124 +    132061 aagaagc-aaatcagaggt------------------catgcaactataaagctgacagagccaacatttaaacttaagtttactgccctatttccaaattctttctactgcaTTCAGAGGCTTAGTTTTGAAGCTCTTCTCT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           239486 125 -    242197 aagaagcaaaatcagaggt------------------cacacagctatgaagctgacagagctaacatttaaacttaagttcactgccctattttcagattctttctactgcaTTCAGAGTCTTAGTTTTGAGGCTCCTCTCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     233121 124 -   1771730 aagaagc-aaatcagaggt------------------cacacagctataaagctgatagagccaacatttaaacttaagttcactgccctatttccaaattctttctactgcaTTCAGAGGCTTAGTTTTGAGGCTCCTCTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315164 124 -    457564 aagaagc-aaattagaggt------------------catacaactatgaagctgacagagccaacatttaaacttaagtttactgccctatttccaaattctttctactgcaTTCAGAGGCTTAGTTTTGAGGCTCTTCTCT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     609832 123 +    730504 aagaagc-aaattagaggt------------------ctcacagctataaaattgacagagccgatatgtgtacttaagtccattagcctgtt-ccaaattctttccactgcaTTCGGAGACTTAGTTTTGAGGCACTCCGCT
i proCoq1.NW_012152574v1   I 124 C 0
s otoGar3.GL873550           125386 123 +  18854210 aagaagc-aagtcagaggt------------------cacacaactacaaaattgactgagctgatatgtgaacttaagtcctttagcctgttgccaaattctttacattgcaTTCAGAGAC-TAGTTTTGAGGCACTCCTTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26241418 142 +  26524999 AAACTAC-AAATCAGAGGTTCCTCCCTCTCCCCTGCCCCCCCCACTTTGAAATTGACAGACCCAATATTTGAACTCAAGCCTTGTAGTCTGTTTCCAAATTCTCTCCACTGTGTTCAGAGATTTAGTCTGAAGGCCTGCCTCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            52866 116 +    102524 aaggagc-cagtcaaaggg------------------caccctgctataaaattggcagggccagtgtttgaacttgagt--------ccatctccgggttcttcccactgcaTTCAGAGACTTGGTTTCAAGGCCCTCCTCT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I

a score=166449.000000
s hg38.chr6_GL000254v2_alt   903525 13 +   4827813 CACCCAACTCCCA
s panTro5.chr6             29866301 13 + 175400573 CACCCAACTCCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30100665 13 + 173848474 CACCCAACTCCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906489 12 +   6154872 CACCCAACT-CCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74611233 13 + 122973662 CACGCACCTCCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095692 13 + 172585720 CACCCAACTCCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759412 13 - 170955103 CACCCAACTCCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806918 13 -   2996164 CACCCAACTCCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558015 13 +    766320 CACCCAACTCCCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014158 13 -  71996105 CACCTAACTCCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196308 13 +    290775 CACCCAACTCCCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649430 13 -   3067355 CACCCAACTCCCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12878 13 +    132061 CACCCAACTCCCA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           239611 13 -    242197 CACCCAACTCCCA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     233245 13 -   1771730 CACCCAGCTCCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315288 13 -    457564 GACCCAACTCCCA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     609955 13 +    730504 CACCCAACTCCCA
i proCoq1.NW_012152574v1   C 0 I 81
s canFam3.chr35            26241560 13 +  26524999 GACTTGGTTTCCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            52982 13 +    102524 TACCCAGCCCCCA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e otoGar3.GL873550           125509  0 +  18854210 C

a score=2552.000000
s hg38.chr6_GL000254v2_alt   903538 1 +   4827813 C
s panTro5.chr6             29866314 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30100678 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906501 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74611246 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29759425 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s saiBol1.JH378357           239624 1 -    242197 C
i saiBol1.JH378357         C 0 C 0
s canFam3.chr35            26241573 1 +  26524999 C
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            52995 1 +    102524 C
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e proCoq1.NW_012152574v1     609968 81 +    730504 I
e otoGar3.GL873550           125509 0 +  18854210 C
e aotNan1.NW_018509740v1     315301 0 -    457564 C
e cebCap1.NW_016107755v1     233258 0 -   1771730 C
e calJac3.chrUn_GL286223      12891 0 +    132061 C
e colAng1.NW_012115566v1    2649443 0 -   3067355 C
e manLeu1.NW_012099233v1     196321 0 +    290775 C
e chlSab2.chr17            29014171 0 -  71996105 C
e cerAty1.NW_012002711v1     558028 0 +    766320 C
e macNem1.NW_012011356v1    2806931 0 -   2996164 C
e rheMac8.chr4             30095705 0 + 172585720 C

a score=6283.000000
s hg38.chr6_GL000254v2_alt   903539 5 +   4827813 TCCAA-
s panTro5.chr6             29866315 5 + 175400573 TCCAA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30100679 5 + 173848474 TCCAA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906502 5 +   6154872 TCCAA-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74611247 5 + 122973662 TCCAA-
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357           239625 5 -    242197 TCCAA-
i saiBol1.JH378357         C 0 C 0
s canFam3.chr35            26241574 5 +  26524999 CCCGA-
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            52996 5 +    102524 -CTGAA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e proCoq1.NW_012152574v1     609968 81 +    730504 I
e otoGar3.GL873550           125509 0 +  18854210 C
e aotNan1.NW_018509740v1     315301 0 -    457564 C
e cebCap1.NW_016107755v1     233258 0 -   1771730 C
e calJac3.chrUn_GL286223      12891 0 +    132061 C
e colAng1.NW_012115566v1    2649443 0 -   3067355 C
e manLeu1.NW_012099233v1     196321 0 +    290775 C
e chlSab2.chr17            29014171 0 -  71996105 C
e cerAty1.NW_012002711v1     558028 0 +    766320 C
e macNem1.NW_012011356v1    2806931 0 -   2996164 C
e macFas5.chr4             29759426 0 - 170955103 C
e rheMac8.chr4             30095705 0 + 172585720 C

a score=5755.000000
s hg38.chr6_GL000254v2_alt   903544 9 +   4827813 GTCTTTttc
s panTro5.chr6             29866320 9 + 175400573 GGCTttttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30100684 9 + 173848474 GGCTTTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906507 8 +   6154872 G-CATTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74611252 9 + 122973662 GGCAttttt
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357           239630 9 -    242197 GGCATTTTT
i saiBol1.JH378357         C 0 C 0
s canFam3.chr35            26241579 9 +  26524999 GCATCTGTC
i canFam3.chr35            C 0 I 211
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53001 0 +    102524 C
e proCoq1.NW_012152574v1     609968 81 +    730504 I
e otoGar3.GL873550           125509 0 +  18854210 C
e aotNan1.NW_018509740v1     315301 0 -    457564 C
e cebCap1.NW_016107755v1     233258 0 -   1771730 C
e calJac3.chrUn_GL286223      12891 0 +    132061 C
e colAng1.NW_012115566v1    2649443 0 -   3067355 C
e manLeu1.NW_012099233v1     196321 0 +    290775 C
e chlSab2.chr17            29014171 0 -  71996105 C
e cerAty1.NW_012002711v1     558028 0 +    766320 C
e macNem1.NW_012011356v1    2806931 0 -   2996164 C
e macFas5.chr4             29759426 0 - 170955103 C
e rheMac8.chr4             30095705 0 + 172585720 C

a score=7758.000000
s hg38.chr6_GL000254v2_alt   903553 11 +   4827813 tttctttcttt
s panTro5.chr6             29866329 11 + 175400573 tttctttcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30100693 10 + 173848474 -ttctttcttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906515 11 +   6154872 tttcttttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74611261  6 + 122973662 tttttt-----
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378357           239639 11 -    242197 TTTTTTTTTTT
i saiBol1.JH378357         C 0 I 1573
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53001  0 +    102524 C
e proCoq1.NW_012152574v1     609968 81 +    730504 I
e canFam3.chr35            26241588 211 +  26524999 I
e otoGar3.GL873550           125509  0 +  18854210 C
e aotNan1.NW_018509740v1     315301  0 -    457564 C
e cebCap1.NW_016107755v1     233258  0 -   1771730 C
e calJac3.chrUn_GL286223      12891  0 +    132061 C
e colAng1.NW_012115566v1    2649443  0 -   3067355 C
e manLeu1.NW_012099233v1     196321  0 +    290775 C
e chlSab2.chr17            29014171  0 -  71996105 C
e cerAty1.NW_012002711v1     558028  0 +    766320 C
e macNem1.NW_012011356v1    2806931  0 -   2996164 C
e macFas5.chr4             29759426  0 - 170955103 C
e rheMac8.chr4             30095705  0 + 172585720 C

a score=182347.000000
s hg38.chr6_GL000254v2_alt   903564 216 +   4827813 ctttc---ttttttttattgagacggagtcttgttcttttgcccaggctggagtgcagtggcacaatctcggctcactgcaacctccgcctcccgggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccatgcccggctaatttttttgtatttttagtagagtcggggtttcactgtgttagccaggatgg
s panTro5.chr6             29866340 214 + 175400573 ctttc-----ttttttattgagacggagtcttgttcttttgcccaggctggagtgcagtggcacgatctcggctcactgcaacctccgcctcctgggttcacaccattctcctgcctcagcctcccgagtagctgcgactacaggcgcccgccaccacgcctggctaatttttttgtatttttagtagagtcggggtttcactgtgttagccaggatgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30100703 218 + 173848474 ctttctttttttttttattgagacggagtcttg-tcttttgcccaggctggagtgcagtggcacgatctcggctcactgcaacctccgcctcctgggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcctggctaatttttttgtatttttaatagagtcggggtttcactgtgttagccaggatgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906526 217 +   6154872 ttttttttttttttttattgagacggagtcttg-ctctttgcccaggctggagtgcagtagcacgatctcggctcactgcgacctccgcctcccgggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcccggct-aCttttttgtatttttagtagagtcggggtttcactgtgttagccaggatgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74611267 209 + 122973662 ----------tttttaattgagacggagtcttgctcttttgccgaggctggagcgcagtggcgcgatctcggctcactgcaacctccgcctcccgggttcacaccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccaccatgcttggctaatttttttgtattcttagtagagtcggggtttcactgtgttagccaggatgg
i nomLeu3.chr1a            C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53001   0 +    102524 C
e proCoq1.NW_012152574v1     609968  81 +    730504 I
e canFam3.chr35            26241588 211 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e otoGar3.GL873550           125509   0 +  18854210 C
e aotNan1.NW_018509740v1     315301   0 -    457564 C
e cebCap1.NW_016107755v1     233258   0 -   1771730 C
e calJac3.chrUn_GL286223      12891   0 +    132061 C
e colAng1.NW_012115566v1    2649443   0 -   3067355 C
e manLeu1.NW_012099233v1     196321   0 +    290775 C
e chlSab2.chr17            29014171   0 -  71996105 C
e cerAty1.NW_012002711v1     558028   0 +    766320 C
e macNem1.NW_012011356v1    2806931   0 -   2996164 C
e macFas5.chr4             29759426   0 - 170955103 C
e rheMac8.chr4             30095705   0 + 172585720 C

a score=36463.000000
s hg38.chr6_GL000254v2_alt   903780 69 +   4827813 tctcgatctcctgacctcgtaatccgcccacctcggcctcccacagtgctgggatgacaggtgtgagcc
s panTro5.chr6             29866554 69 + 175400573 tctcgatctcctgacctcgtaatccgcccacctcggcctcccaaagtgctaggatgacaggtgtgagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30100921 69 + 173848474 tctcgatctcctgacctcgtaatccgcccacctcggcctcccaaagtgctaggatgacaggtgtgagcc
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611476 69 + 122973662 tctcaatctcctgacctcataatctgcctgccttggcctcccaaagtgctgggatgacaggtgtgagcc
i nomLeu3.chr1a            C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53001  0 +    102524 C
e proCoq1.NW_012152574v1     609968 81 +    730504 I
e canFam3.chr35            26241588 211 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e otoGar3.GL873550           125509  0 +  18854210 C
e aotNan1.NW_018509740v1     315301  0 -    457564 C
e cebCap1.NW_016107755v1     233258  0 -   1771730 C
e calJac3.chrUn_GL286223      12891  0 +    132061 C
e colAng1.NW_012115566v1    2649443  0 -   3067355 C
e manLeu1.NW_012099233v1     196321  0 +    290775 C
e chlSab2.chr17            29014171  0 -  71996105 C
e cerAty1.NW_012002711v1     558028  0 +    766320 C
e macNem1.NW_012011356v1    2806931  0 -   2996164 C
e macFas5.chr4             29759426  0 - 170955103 C
e rheMac8.chr4             30095705  0 + 172585720 C
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=5570.000000
s hg38.chr6_GL000254v2_alt   903849 11 +   4827813 accacacccgg
s panTro5.chr6             29866623 11 + 175400573 accacgcctgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30100990 11 + 173848474 accacgcctgg
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611545 11 + 122973662 accacacctgg
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873550           125509 11 +  18854210 ACCCAACTCCA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53001  0 +    102524 C
e proCoq1.NW_012152574v1     609968 81 +    730504 I
e canFam3.chr35            26241588 211 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e aotNan1.NW_018509740v1     315301  0 -    457564 C
e cebCap1.NW_016107755v1     233258  0 -   1771730 C
e calJac3.chrUn_GL286223      12891  0 +    132061 C
e colAng1.NW_012115566v1    2649443  0 -   3067355 C
e manLeu1.NW_012099233v1     196321  0 +    290775 C
e chlSab2.chr17            29014171  0 -  71996105 C
e cerAty1.NW_012002711v1     558028  0 +    766320 C
e macNem1.NW_012011356v1    2806931  0 -   2996164 C
e macFas5.chr4             29759426  0 - 170955103 C
e rheMac8.chr4             30095705  0 + 172585720 C
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=248.000000
s hg38.chr6_GL000254v2_alt   903860 1 +   4827813 -c
s panTro5.chr6             29866634 1 + 175400573 -c
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101001 1 + 173848474 -c
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611556 1 + 122973662 -T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095705 1 + 172585720 -C
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806931 1 -   2996164 -C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558028 1 +    766320 -C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014171 1 -  71996105 -C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196321 1 +    290775 -C
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649443 1 -   3067355 -C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12891 1 +    132061 -C
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233258 1 -   1771730 -C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315301 1 -    457564 -C
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           125520 1 +  18854210 A-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53001 0 +    102524 C
e proCoq1.NW_012152574v1     609968 81 +    730504 I
e canFam3.chr35            26241588 211 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e macFas5.chr4             29759426 0 - 170955103 C
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=9555.000000
s hg38.chr6_GL000254v2_alt   903861 1 +   4827813 T
s panTro5.chr6             29866635 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101002 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611557 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095706 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759426 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806932 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558029 1 +    766320 T
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014172 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196322 1 +    290775 T
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649444 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12892 1 +    132061 T
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233259 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315302 1 -    457564 T
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           125521 1 +  18854210 T
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               120342 503 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53001 0 +    102524 C
e proCoq1.NW_012152574v1     609968 81 +    730504 I
e canFam3.chr35            26241588 211 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=199269.000000
s hg38.chr6_GL000254v2_alt   903862 20 +   4827813 CCAAGGCATTTTCTGTCAAG
s panTro5.chr6             29866636 20 + 175400573 CCAAGGCATTTTCTGTCAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101003 20 + 173848474 CCAAGGCATTTTCTGTCAAG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611558 20 + 122973662 CCAAGGCATTTTCTATCAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095707 20 + 172585720 CCAAGGCATTTTCTATCAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759427 20 - 170955103 CCAAGGCATTTTCTATCAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806933 20 -   2996164 CCAAGGCATTTTCTGTCAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558030 20 +    766320 CCAAGGTATTTTCTATCAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014173 20 -  71996105 CCAAGGCATTTTCTATCAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196323 20 +    290775 CCAAGGTATTTTCTATCAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649445 20 -   3067355 CCAAGGCATTTTCTATCAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12893 20 +    132061 CTAAGGCATTTTCTATCAAA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233260 20 -   1771730 CCAAGGCATTTTCTATCAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315303 20 -    457564 CCAAGGCATTTTCTATCAAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               120845 20 + 123392446 CCAAGGCATTCTCTACCAAA
i micMur3.chr6             I 503 C 0
s otoGar3.GL873550           125522 20 +  18854210 CCAAGGCATTCTCTCCCAAA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53001  0 +    102524 C
e proCoq1.NW_012152574v1     609968 81 +    730504 I
e canFam3.chr35            26241588 211 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=160622.000000
s hg38.chr6_GL000254v2_alt   903882 22 +   4827813 GGTCAAACTGCAGTTCT-----------------------------ATTCT-----
s panTro5.chr6             29866656 22 + 175400573 GGTCAAACTGCAGTTCT-----------------------------ATTCT-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101023 22 + 173848474 TGTCAAACTGCAGTTCT-----------------------------ATTCT-----
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611578 22 + 122973662 GGTCAAACTGCAGTTCT-----------------------------ATTCT-----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095727 21 + 172585720 GGTC-AACTGCAGTTCT-----------------------------GTTCT-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759447 21 - 170955103 GGTC-AACTGCAGTTCT-----------------------------GTTCT-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806953 21 -   2996164 GGTC-AACTGCAGTTCT-----------------------------GTTCT-----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558050 21 +    766320 GGTC-AACTGCAGTTCT-----------------------------GTTCT-----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014193 21 -  71996105 GGTC-AACTGCAGTTCT-----------------------------GTTCT-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196343 21 +    290775 GGTC-AACTGCAGTTCT-----------------------------GTTCT-----
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649465 21 -   3067355 GGTC-AACTGCAATTCT-----------------------------GTTCT-----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12913 22 +    132061 GGTCAAAGTGCTGTTGT-----------------------------ATTCT-----
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233280 22 -   1771730 GGTCAAACTGCTGTTGT-----------------------------TTTCT-----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315323 22 -    457564 GGTCAAACTGCTGTTGT-----------------------------GTTCT-----
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               120865 22 + 123392446 GGTCAAACTGCAGTTCT-----------------------------GTTCT-----
i micMur3.chr6             C 0 I 48
s otoGar3.GL873550           125542 51 +  18854210 AGTCAAACTGCAGTTCTGGAGGTTTATTCACCACCCGTCTAAGGAGGTTCT-----
i otoGar3.GL873550         C 0 I 5
s dasNov3.JH582591            53001 27 +    102524 GGTCAAGCTGCGTCTCA-----------------------------GCTCCATCTT
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57943718 1415 -  94987271 I
e proCoq1.NW_012152574v1     609968 81 +    730504 I
e canFam3.chr35            26241588 211 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=141030.000000
s hg38.chr6_GL000254v2_alt   903904 16 +   4827813 CTCATCTAAAGTAGTG
s panTro5.chr6             29866678 16 + 175400573 CTCATCTAAAGTAGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101045 16 + 173848474 CTCATCTAAAGTAGTG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611600 16 + 122973662 CTCATCTAAAGTAGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095748 16 + 172585720 CTCATCTGAAGTAGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759468 16 - 170955103 CTCATCTGAAGTAGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806974 16 -   2996164 CTCATCTGAAGTAGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558071 16 +    766320 TTCATCTGAAGTAGTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014214 16 -  71996105 CCCATCTGAAGTAGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196364 16 +    290775 CTCATCTGAAGTAGTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649486 16 -   3067355 CTCATCTGAAGTAGTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12935 16 +    132061 CTCATCTGAAGCGGTG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233302 16 -   1771730 CTCATCTGAAGCAGTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315345 16 -    457564 CTCATCTGAAGCGGTG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           125598 16 +  18854210 CTCACCTGAAGTAGTA
i otoGar3.GL873550         I 5 C 0
s dasNov3.JH582591            53028 15 +    102524 CTC-CCAGGAACAGTA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               120887 48 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e proCoq1.NW_012152574v1     609968 81 +    730504 I
e canFam3.chr35            26241588 211 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=233078.000000
s hg38.chr6_GL000254v2_alt   903920 27 +   4827813 GTGATCACTGGGTGAATGGAAGATGTT
s panTro5.chr6             29866694 27 + 175400573 GTGATCACTGGGTGAATGGAAGATGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101061 27 + 173848474 GTGATCACTGGGTGAATGGAAGATGTT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611616 27 + 122973662 GTGATCACTGGGTGAATGGAAGATGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095764 27 + 172585720 GTGATCACTGGGTGAATGGAAGATGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759484 27 - 170955103 GTGATCACTGGGTGAATGGAAGATGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2806990 27 -   2996164 GTGATCACTGGGTGAATGGAAGATGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558087 27 +    766320 GTGATCACTGGGTGAATGGAAGATGTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014230 27 -  71996105 GTGATCACTGGGTGAATGGAAGATGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196380 27 +    290775 GTGATCACTGGGTGAATGGAAGATGTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649502 27 -   3067355 GTGATCACTGGGTGAATGGAAGATGTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12951 27 +    132061 GTGATCACTGGATGAATGGAATATGTT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233318 27 -   1771730 GTGATCACTGGATGAATGGAAGATGTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315361 27 -    457564 GTGATCACTGGGAGAATGGAAGATGTT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           125614 21 +  18854210 GTAGTTGGCAAGTGAACAGAA------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26241799 26 +  26524999 gtgagca-tgggtgcgtgagggtgggt
i canFam3.chr35            I 211 I 3
s dasNov3.JH582591            53043 26 +    102524 CTGGCCAGTGTG-GAAGGGAAGGTGCC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               120887 48 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e proCoq1.NW_012152574v1     609968 81 +    730504 I
e saiBol1.JH378357           239650 1573 -    242197 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=22696.000000
s hg38.chr6_GL000254v2_alt   903947 2 +   4827813 CA
s panTro5.chr6             29866721 2 + 175400573 CA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101088 2 + 173848474 CA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611643 2 + 122973662 CA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095791 2 + 172585720 CC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759511 2 - 170955103 CA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807017 2 -   2996164 CA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558114 2 +    766320 CA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014257 2 -  71996105 CA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196407 2 +    290775 CA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649529 2 -   3067355 CA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12978 2 +    132061 CA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233345 2 -   1771730 CA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315388 2 -    457564 CA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               120935 2 + 123392446 CA
i micMur3.chr6             I 48 C 0
s canFam3.chr35            26241828 2 +  26524999 CA
i canFam3.chr35            I 3 C 0
s dasNov3.JH582591            53069 2 +    102524 CA
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57943718 1415 -  94987271 I
e proCoq1.NW_012152574v1     609968 81 +    730504 I
e saiBol1.JH378357           239650 1573 -    242197 I
e otoGar3.GL873550           125635 0 +  18854210 C
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=1088034.000000
s hg38.chr6_GL000254v2_alt   903949  98 +   4827813 TGTCCTCTTGGGTTAGGATGAAAGAC-------CTGTCTTCTGGGAGAGTTTTCTGTCCTGTAACAGCTCTTGCTCTTTAGAAAAATGTATAGGGCAAAGGTTTA
s panTro5.chr6             29866723  98 + 175400573 TGTCCTCTTGGGTTAGGATGAAAGAC-------CTGTCTTCTGGCAGAGTTTTCTGTCCTGTAACAGCTCTTGCTGTTTAGAAAAATGTATAGGGCAAAGGTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101090  98 + 173848474 TGTCCTCTTGGGTTAGGATGAAAGAC-------CTGTCTTCTGGCAGAGTTTTCTGTCCTGTAACAGCTCTTGCTGTTTAGAAAAATGTATAGGGCAAAGGTTTA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611645 105 + 122973662 TTTCCTCTTGGGTTAGGATGAAAGACCTGTCTTCTGTCTTCTGGGGGAGTTTTCTGTCCTGTAACAGCTCTTGCTGTTTAGAAAAATGTATAGAGCAAAGGTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095793  98 + 172585720 TGTCCTCTTGGATTAGGATGAAAGAC-------CTGTCTTCTGGGAGAGTTTTCTGTCCTGTAACAGCTCTTGCTGTTTAGAAAAATGTATAGAGCAAAGGTTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759513  98 - 170955103 TGTCCTCTTGGATTAGGATGAAAGAC-------CTGTCTTCTGGGAGAGTTTTCTGTCCTGTAACAGCTCTTGCTGTTTAGAAAAATGTATAGAGCAAAGGTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807019  98 -   2996164 TGTCCTCTTGGATTAGGATGAAAGAC-------CTGTCTTCTGGGAGAGTTTTCTGTCCTGTAACAGCTCTTGCTGTTTAGAAAAATGTATAGAGCAAAGGTTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558116  98 +    766320 TGTCCTCTTGGATTAGGATGAAAGAC-------CTGTCTTCTGGGAGAGTTTTCTGTCCTGTAACAGCTCTTGCTGTTTAGAAAAATGTATAGAGCAAAGGTTTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014259  98 -  71996105 TGTCCTCTTGGATTAGGATGAAAGAC-------CTGTCTTCTGGGAGAGTTTTCTGTCCTGTAACAGCTCTTGCTGTTTAGAAAAATGTATAGAGCAAAGGTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196409  98 +    290775 TGTCCTCTTGGATTAGGATGAAAGAC-------CTGTCTTCTGGGAGAGTTTTCTGTCCTGTAACAGCTCTTGCTGTTTAGAAAAATGTATAGAGCAAAGGTTTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649531  98 -   3067355 TGTCCTCTTGGATTAGGATGAAAGAC-------CTGTCTTCTGGGAGAGTTTTCTGTCCTATAACAGCTCTTGCTGTTTAGAAAAATGTATAGGGCAAAGGTTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      12980  98 +    132061 TGCCCTCTTGGGTTAGGATGAAAAAA-------CTGTCTTCACAGAGAGTGTTCTGTCCTATGACAGCTCTTGCTGTTTAGAAAAATGTATGGGGCAAAGGTTTG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233347  98 -   1771730 TGTCCTCTTGGGTTAGGATGAAGAAC-------CTGTCTTTAGGGAGAGTTTTCTGTCCTATGACAGCTCTTGCTGTTTAGAAAAATGTATGGGGCAAAGGTTTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315390  98 -    457564 TGCCCTCTTGGGTTAGGATGAAAAAC-------CTGTCTTCAGGGAGAGTTTTCTGTCCTATGACAGCTCTTGCTGTTTAGAAAAATGTATGGGGCGAAGGTTTA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               120937  97 + 123392446 TGTCCTCTTCTGTCAGGATGAAAGAT-------CTGTCTTCAGGGAGAGTTTTCTGTCCTAC-ACAGCTCTTGCCATTTAGAAAAACATATGGGGCGAAAGTTTA
i micMur3.chr6             C 0 I 13
s proCoq1.NW_012152574v1     610049  97 +    730504 TGTCCTCTTCTGTCAGGATGAAAGAT-------CTGTCTTCAGGGAGAGTTTTCTATCCTAC-ACGGCTCTTGATGTTTAGAAAAATGTATGGGGCGAAAGTTTA
i proCoq1.NW_012152574v1   I 81 C 0
s otoGar3.GL873550           125635  74 +  18854210 ----------------------AGAC-------TTGTCTTTAGAAAG-GTTTTCTGACCTAC-ACAGTTCTTGCTGTTTAGAAATTTGTATGAGGAAATGGCTTA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26241830  97 +  26524999 CGTCCTCTTGCATCAGGGTGGACGTC-------CTGTCTTCAAGAACGGCCTTCTGTCCTGC-ACAGCTCTTCCAATTTAGGGTCCCGTGTAGGACAAAAGCCTC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            53071  60 +    102524 ---------------------CACGC-------TTGTCCTCAGGGAGGGT-TTCTGTCCTAC-ACAGCTCT---------------CGTCTGGGGCAAAGGTTTA
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57943718 1415 -  94987271 I
e saiBol1.JH378357           239650 1573 -    242197 I
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=286237.000000
s hg38.chr6_GL000254v2_alt   904047 27 +   4827813 TTATTCAAACGTGAAGTTATTTACACT
s panTro5.chr6             29866821 27 + 175400573 TTATTCAAACGTGAAGTTATTTACACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101188 27 + 173848474 TTATTCAAACGTGAAGTTATTTACACT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611750 27 + 122973662 TTATTCAAATGTGAAGTTATTTACACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095891 27 + 172585720 TTATTCAAATGTGAAGTTATTTAAACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759611 27 - 170955103 TTATTCAAATGTGAAGTTATTTAAACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807117 27 -   2996164 TTATTCAAATGTGAAGTTATTTAAACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558214 27 +    766320 TTATTCAAATGTGAAGTTATTTACACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014357 27 -  71996105 TTATTCAAATGTGAAGTTATTTACACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196507 27 +    290775 TTATTCAAATGTGAAGTTATTTACACT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649629 27 -   3067355 TTATTCAAATGTGAAGTTATTTACACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      13078 27 +    132061 TTATTCAAACGTGAAGTTATTTACACT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233445 27 -   1771730 TTATTCAAACATGAAGTGTTTTACACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315488 27 -    457564 TTATTCAAACGTGAAGTTATTTACACT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     610146 27 +    730504 AAATTCAAAAGTGAAGTGATTTACACT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           125709 27 +  18854210 AAATTCAAATGTGAAGTTATTTACACT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26241927 26 +  26524999 AAATTCAAACATGGGGT-ATTTACAGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            53131 25 +    102524 AAATTT--ACATGAAGTTATTTACACG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               121034 13 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e saiBol1.JH378357           239650 1573 -    242197 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=170219.000000
s hg38.chr6_GL000254v2_alt   904074 15 +   4827813 CTGGGATTCACTCTG
s panTro5.chr6             29866848 15 + 175400573 CTGGGATACACTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101215 15 + 173848474 CTGGGATACACTCTG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611777 15 + 122973662 CTGGGATTCACTCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095918 15 + 172585720 CTGGGATTCACTCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759638 15 - 170955103 CTGGGATTCACTCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807144 15 -   2996164 CTGGGATTCACTCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558241 15 +    766320 CTGGGATTCACTCTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014384 15 -  71996105 CTGGGATTCACTCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196534 15 +    290775 CTGGGATTCACTCTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649656 15 -   3067355 CTGGGATTCACTCTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      13105 14 +    132061 -TGGGATTCACTATG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233472 15 -   1771730 CTGGGTTTCACTCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315515 15 -    457564 CTGGGATTCACTCTG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               121047 15 + 123392446 CTGGGATTCACTCTG
i micMur3.chr6             I 13 C 0
s proCoq1.NW_012152574v1     610173 15 +    730504 CTGGGCTTCACTCTG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           125736 15 +  18854210 TTAGGCTTTACTCTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26241953 15 +  26524999 TCAGGCTTCATCCTG
i canFam3.chr35            C 0 I 169
s dasNov3.JH582591            53156  5 +    102524 CAGGG----------
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57943718 1415 -  94987271 I
e saiBol1.JH378357           239650 1573 -    242197 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=199642.000000
s hg38.chr6_GL000254v2_alt   904089 20 +   4827813 GCTTTTTAGTGAGGTTTTGA
s panTro5.chr6             29866863 20 + 175400573 GCTTTTTAGTGAGGTTTTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101230 20 + 173848474 GCTTTTTAGTGAGGTTTTGA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611792 20 + 122973662 GCTTTTTAGTGAGGTTTTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095933 20 + 172585720 GCTTTTTAATGAGGTTTTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759653 20 - 170955103 GCTTTTTAATGAGGTTTTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807159 20 -   2996164 GCTTTTTAATGAGGTTTTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558256 20 +    766320 GCTTTTTAATGAGGTTTTGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014399 20 -  71996105 GCTTTTTAATGAGGTTTTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196549 20 +    290775 GCTTTTTAATGAGGTTTTGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649671 20 -   3067355 GCTTTTTAATGAGGTTTTGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      13119 20 +    132061 GTTTTCTAGTGAGGGCTTAA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233487 20 -   1771730 GCTTTCTAATGAGGGCTTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315530 20 -    457564 GTTTTCTAATGAGGGCTTAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               121062 20 + 123392446 GCTTTTGAATGAGGGTTTGA
i micMur3.chr6             C 0 I 18287
s proCoq1.NW_012152574v1     610188 20 +    730504 GCTTTTTAATGAGGGTTTGA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           125751 18 +  18854210 GCTTTTTAATGAGGGTTT--
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53161  0 +    102524 C
e canFam3.chr35            26241968 169 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=56947.000000
s hg38.chr6_GL000254v2_alt   904109 7 +   4827813 ATCCTTT
s panTro5.chr6             29866883 7 + 175400573 ATCCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101250 7 + 173848474 ATCCTTT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611812 7 + 122973662 ATCCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095953 7 + 172585720 ACTCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759673 7 - 170955103 ACTCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807179 7 -   2996164 ACTCTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558276 7 +    766320 ACTCTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014419 7 -  71996105 ACTCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196569 7 +    290775 ACTCTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649691 7 -   3067355 ACTCTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      13139 7 +    132061 ACTCTTT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233507 7 -   1771730 ACTCTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315550 7 -    457564 ACTCTTT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     610208 7 +    730504 ACCCTTT
i proCoq1.NW_012152574v1   C 0 I 162
e micMur3.chr6               121082 18287 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53161 0 +    102524 C
e canFam3.chr35            26241968 169 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e otoGar3.GL873550           125769 0 +  18854210 C
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=195199.000000
s hg38.chr6_GL000254v2_alt   904116 24 +   4827813 GCATCATA-TTTAATATCACTAAAA
s panTro5.chr6             29866890 24 + 175400573 CCATCATA-TTTAATATCACTAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101257 24 + 173848474 CCATCATA-TTTAATATCACTAAAA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611819 24 + 122973662 CCATCATA-TTTAATATCACTAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095960 24 + 172585720 CCATCATA-TTTAATATCACTAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759680 24 - 170955103 CCATCATA-TTTAATATCACTAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807186 24 -   2996164 CCATCATA-TTTAATATCACTAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558283 24 +    766320 CCGTCATA-TTTAATATCACTAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014426 24 -  71996105 CCGTCATA-TTTAATATCACTAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196576 24 +    290775 CCGTCATA-TTTAATATCACTAAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649698 24 -   3067355 CCGTCATA-TTTAATATCACTAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      13146 24 +    132061 CTGTCATA-TTTAATATCACTAAAA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233514 24 -   1771730 CTGTCATA-TTTAATATCACTAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315557 24 -    457564 CTGTCATA-TTTAATATCACTAAAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           125769 23 +  18854210 --ATCACACTTTAATATCACTAAAA
i otoGar3.GL873550         C 0 I 340
s dasNov3.JH582591            53161  5 +    102524 -------------------CTAAA-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e proCoq1.NW_012152574v1     610215 162 +    730504 I
e canFam3.chr35            26241968 169 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=753498.000000
s hg38.chr6_GL000254v2_alt   904140 86 +   4827813 TAGGATATTTTTGTGAAACTGTTTGATCCTTCCCCTCAGTTTCCATTTGTGTGTTCTCTTTCTTCCCGTCTTGATAGGCACAGGCA
s panTro5.chr6             29866914 86 + 175400573 TAGGATATTTTTGTGAAACTGTTTGATCCTTCCCCTCAGTTTCCATTTGTGTGTTCTCTTTCTTCCCGTCTTGATAGGCACAGGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101281 86 + 173848474 TAGGATATTTTTGTGAAACTGTTTGATCCTTCCCCTCAGTTTCCATTTGTGTGTTCTCTTTCTTCCCGTCTTGATAGGCACAGGCA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611843 86 + 122973662 TAGGATATTTTTGTGAAACTGTTTGATCCTTCCCCTCAGTTTCCATTTGTGTGTTCTCTTTCTTCCCGTCTTGATAGGCACAGGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30095984 86 + 172585720 TAGGATATTTTTGTGAAACTGTTTGATCCTGCCCCTCAGTTTCCATTTGTATGTTCTCTTTCTTCCCATCTTGATAGGCACAGGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759704 86 - 170955103 TAGGATATTTTTGTGAAACTGTTTGATCCTTCCCCTCAGTTTCCATTTGTATGTTCTCTTTCTTCCCATCTTGATAGGCACAGGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807210 86 -   2996164 TAGGATATTTTTGTGAAACTGTTTGATCCTTCCCCTCAGTTTCCATTTGTATGTTCTCTTTCTTCCCATCTTGATAGGCACAGGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558307 86 +    766320 TAGGATATTTTTGTGAAACTGTTTGATCCTTCCCCTCAGTTTCCATTTGTCTGTTCTCTTTCTTCCCATCTTGATAGGCACAGGCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014450 86 -  71996105 TAGGATATTTTTGTGAAACTATTTGATCCTTCCCCTCAGTTTCCATTTGTATGTTCTCTTTCTTCCCATCTTGATAGGCACAGGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196600 86 +    290775 TAGGATATTTTTGTCAAACTGTTTGATCCTTCCCCTCAGTTTCCATTTGTCTGTTCTCTTTCTTCCCATCTTGATAGGCACAGGCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649722 86 -   3067355 TAGGATATTTTTGTGAAACTGTTTGATCCTTCCCCTCAGTTTCCATTTGTATGTTCTCTTTCTTCCCATCTTGATAGACACAGGCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      13170 86 +    132061 TAGAATATTTTTGTGAAACTGTTTGATCCTTCCCCTCAGTTTCCATGTATGTATTTTCTTTCTTCCCATCTTGATAGGCATAGGCA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233538 86 -   1771730 TAGGATATTTTCATGAAACTGTTTGATCCTTCCCCTCAGTTTCCATGTGTGTGTTTTCTTTCTTCTCATCTTGATAAGTACAGGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315581 86 -    457564 TAGGATATTTTTGTGAAACTGTTTGATCCTTCCCCTCAGTTTCCATGTATGTGTTTTCTGTCTTCCCATCTTGATAGGCATAGGCA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           126132 77 +  18854210 TAAAACATTCT--------TGTTTGAGCCT-ATCCTCATTTTTCATGTGTGTGTTCCCTTTTTTCCTTTTTTGAGAGATGTAGATA
i otoGar3.GL873550         I 340 C 0
s dasNov3.JH582591            53166 73 +    102524 -----CATTC--------CTGGTTGACCTTTCCTCTTTCTTTTCATTTGTAGCATCTTGCTTCTCTTTTCTTGATAGAAGTAGGCA
i dasNov3.JH582591         C 0 I 54
e micMur3.chr6               121082 18287 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e proCoq1.NW_012152574v1     610215 162 +    730504 I
e canFam3.chr35            26241968 169 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=193557.000000
s hg38.chr6_GL000254v2_alt   904226 21 +   4827813 CTCAGAATCACTGGGCCAGAA
s panTro5.chr6             29867000 21 + 175400573 CTCAGAATCACTGGGCCAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101367 21 + 173848474 CTCAGAATCACTGGGCCAGAA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611929 21 + 122973662 CTCAGAATGACTGGGCCAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096070 21 + 172585720 CTCAGAATCACTGAGCCAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759790 21 - 170955103 CTCAGAATCACTGAGCCAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807296 21 -   2996164 CTGAGAATCACTGAGCCAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558393 21 +    766320 CTCAGAATCACTGAGCCAGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014536 21 -  71996105 CTCAGAATCACTGAGCCAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196686 21 +    290775 CTCAGAATCACTGAGCCAGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649808 21 -   3067355 CTCAGAATCACTGAGCCAGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      13256 21 +    132061 CTCAGAATCACTGGGCCAGAA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233624 21 -   1771730 CTCAGAATCACTGGGCCAGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315667 21 -    457564 CTCAGAATCACTGGGCCAGAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           126209 21 +  18854210 CTCAGAATCATTGGGTCAGAA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53239 54 +    102524 I
e proCoq1.NW_012152574v1     610215 162 +    730504 I
e canFam3.chr35            26241968 169 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=40447.000000
s hg38.chr6_GL000254v2_alt   904247 7 +   4827813 AGAAGTA
s panTro5.chr6             29867021 7 + 175400573 AGAAGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101388 7 + 173848474 AGAAGTA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611950 7 + 122973662 AGAAGTA
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002711v1     558414 7 +    766320 AGAAGTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014557 7 -  71996105 AGAAGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196707 7 +    290775 AGAAGTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649829 7 -   3067355 AGAAGTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      13277 7 +    132061 AGAAGTA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233645 7 -   1771730 AGAAGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315688 7 -    457564 AGAAGTA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           126230 7 +  18854210 GAAAGTA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53239 54 +    102524 I
e proCoq1.NW_012152574v1     610215 162 +    730504 I
e canFam3.chr35            26241968 169 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e macNem1.NW_012011356v1    2807317 0 -   2996164 C
e macFas5.chr4             29759811 0 - 170955103 C
e rheMac8.chr4             30096091 0 + 172585720 C
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=4684.000000
s hg38.chr6_GL000254v2_alt   904254 5 +   4827813 -AGAGA
s panTro5.chr6             29867028 5 + 175400573 -AGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101395 5 + 173848474 -AGAGA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611957 5 + 122973662 -AGAGA
i nomLeu3.chr1a            C 0 C 0
s cebCap1.NW_016107755v1     233652 5 -   1771730 -AGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315695 5 -    457564 -AGGGA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           126237 5 +  18854210 AGGAG-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53239 54 +    102524 I
e proCoq1.NW_012152574v1     610215 162 +    730504 I
e canFam3.chr35            26241968 169 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e calJac3.chrUn_GL286223      13284 0 +    132061 C
e colAng1.NW_012115566v1    2649836 0 -   3067355 C
e manLeu1.NW_012099233v1     196714 0 +    290775 C
e chlSab2.chr17            29014564 0 -  71996105 C
e cerAty1.NW_012002711v1     558421 0 +    766320 C
e macNem1.NW_012011356v1    2807317 0 -   2996164 C
e macFas5.chr4             29759811 0 - 170955103 C
e rheMac8.chr4             30096091 0 + 172585720 C
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=2865.000000
s hg38.chr6_GL000254v2_alt   904259 2 +   4827813 GT
s panTro5.chr6             29867033 2 + 175400573 GT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101400 2 + 173848474 GT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611962 2 + 122973662 GT
i nomLeu3.chr1a            C 0 C 0
s cebCap1.NW_016107755v1     233657 2 -   1771730 GT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315700 2 -    457564 GT
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53239 54 +    102524 I
e proCoq1.NW_012152574v1     610215 162 +    730504 I
e canFam3.chr35            26241968 169 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e otoGar3.GL873550           126242 0 +  18854210 C
e calJac3.chrUn_GL286223      13284 0 +    132061 C
e colAng1.NW_012115566v1    2649836 0 -   3067355 C
e manLeu1.NW_012099233v1     196714 0 +    290775 C
e chlSab2.chr17            29014564 0 -  71996105 C
e cerAty1.NW_012002711v1     558421 0 +    766320 C
e macNem1.NW_012011356v1    2807317 0 -   2996164 C
e macFas5.chr4             29759811 0 - 170955103 C
e rheMac8.chr4             30096091 0 + 172585720 C
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=910.000000
s hg38.chr6_GL000254v2_alt   904261 1 +   4827813 A
s panTro5.chr6             29867035 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101402 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611964 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s aotNan1.NW_018509740v1     315702 1 -    457564 A
i aotNan1.NW_018509740v1   C 0 I 8
e micMur3.chr6               121082 18287 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53239 54 +    102524 I
e proCoq1.NW_012152574v1     610215 162 +    730504 I
e canFam3.chr35            26241968 169 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e otoGar3.GL873550           126242 0 +  18854210 C
e cebCap1.NW_016107755v1     233659 0 -   1771730 C
e calJac3.chrUn_GL286223      13284 0 +    132061 C
e colAng1.NW_012115566v1    2649836 0 -   3067355 C
e manLeu1.NW_012099233v1     196714 0 +    290775 C
e chlSab2.chr17            29014564 0 -  71996105 C
e cerAty1.NW_012002711v1     558421 0 +    766320 C
e macNem1.NW_012011356v1    2807317 0 -   2996164 C
e macFas5.chr4             29759811 0 - 170955103 C
e rheMac8.chr4             30096091 0 + 172585720 C
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=156549.000000
s hg38.chr6_GL000254v2_alt   904262 309 +   4827813 ggccgggcacggtggctcatgcctgtaatcccagcactttgggaagccaaggcgggcagatcacgaggttatgagatcaagaccatcctggctaacacggtgaaacaccgtctctactaaaaatacaaaaaaaataattagccgggcgtgatggtgggcgcctgtaatcccagctacttgggaggctgaggcaggagaatggcgtgacctgggaggcggagcttgcagtgatcagagatcgagccactgcactccagcctgggcgacaaagtgaaactccgtctcaggaaaaaaaaaaaaaaaaGAGAG
s panTro5.chr6             29867036 303 + 175400573 ggccgggcacggtggctcatgcctgtaatcccagcactttgggaagccaaggcgggcagatcacgaggttatgagatcaagaccatcctggctaacatggtgaaacaccgtctctactaaaaatacaaaaaaaaaaattagccgggcgtgatggtgggcgcctgtaatcccaactacttgggaggctgaggcaggagaatggcgtgacctgggaggcggagcttgcagtgatcagagatcgagccactgcgctccagcctgggcgacaaagtgaaactccgtctcaggaaaaaaaaaaaaaaa------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101403 297 + 173848474 ggccgggcacggtggctcatgcctgtaatcccagcactttgggaagccaaggcgggcagatcacgaggttatgagatcaagaccatc----ctaacatggtgaaacaccgtctctactaaaaatacaaaaaaaa-aattagccaggcgtgatggtgggcgcctgtaatcccaactacttgggaggctgaggcaggagaatggcgtgacctgggaggcggagcttgcagtgatcagagatcgagccactgcgctccagcctgggcgacaaagtgaaactccgtctcaggaaaagaaaaaaaaa-------
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74611965 307 + 122973662 ggccgggtgcagtggctcacgtctgtaatcccagcactttaggaagccgaggtgggcggatcatgaggttatgagatcaagaccatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaaaaaaattagccgggcgtgatggtgggcacctgtaatcccagctacttgggaggctgaggcaggagaatggcgtgacctgggaggcggagcttgcagtgagcagagatcgagccactgcactccagcctgggcgacagagtgagactccgtctcaaaaaaaaaaaaaaaGAGAGAG--
i nomLeu3.chr1a            C 0 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53239  54 +    102524 I
e proCoq1.NW_012152574v1     610215 162 +    730504 I
e canFam3.chr35            26241968 169 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e otoGar3.GL873550           126242   0 +  18854210 C
e aotNan1.NW_018509740v1     315703   8 -    457564 I
e cebCap1.NW_016107755v1     233659   0 -   1771730 C
e calJac3.chrUn_GL286223      13284   0 +    132061 C
e colAng1.NW_012115566v1    2649836   0 -   3067355 C
e manLeu1.NW_012099233v1     196714   0 +    290775 C
e chlSab2.chr17            29014564   0 -  71996105 C
e cerAty1.NW_012002711v1     558421   0 +    766320 C
e macNem1.NW_012011356v1    2807317   0 -   2996164 C
e macFas5.chr4             29759811   0 - 170955103 C
e rheMac8.chr4             30096091   0 + 172585720 C
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=29876.000000
s hg38.chr6_GL000254v2_alt   904571 5 +   4827813 AGAGA
s panTro5.chr6             29867339 5 + 175400573 aGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101700 5 + 173848474 aGAGA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74612272 5 + 122973662 AGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096091 5 + 172585720 AGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759811 5 - 170955103 AGAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807317 5 -   2996164 AGAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558421 5 +    766320 AGAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014564 5 -  71996105 AGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196714 5 +    290775 AGAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649836 5 -   3067355 AGAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      13284 5 +    132061 AGGGA
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53239 54 +    102524 I
e proCoq1.NW_012152574v1     610215 162 +    730504 I
e canFam3.chr35            26241968 169 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e otoGar3.GL873550           126242 0 +  18854210 C
e aotNan1.NW_018509740v1     315703 8 -    457564 I
e cebCap1.NW_016107755v1     233659 0 -   1771730 C
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=14898.000000
s hg38.chr6_GL000254v2_alt   904576 2 +   4827813 GT
s panTro5.chr6             29867344 2 + 175400573 GT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101705 2 + 173848474 GT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74612277 2 + 122973662 GT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096096 2 + 172585720 GT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759816 2 - 170955103 GT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807322 2 -   2996164 GT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558426 2 +    766320 GT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014569 2 -  71996105 GT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196719 2 +    290775 GT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649841 2 -   3067355 GT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      13289 2 +    132061 GT
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           126242 2 +  18854210 GT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53239 54 +    102524 I
e proCoq1.NW_012152574v1     610215 162 +    730504 I
e canFam3.chr35            26241968 169 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e aotNan1.NW_018509740v1     315703 8 -    457564 I
e cebCap1.NW_016107755v1     233659 0 -   1771730 C
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=57820.000000
s hg38.chr6_GL000254v2_alt   904578 9 +   4827813 AAGGGAACA
s panTro5.chr6             29867346 9 + 175400573 AAGGGAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101707 9 + 173848474 AAGGGAACA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74612279 9 + 122973662 AAGAGAACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096098 9 + 172585720 AAGGGAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759818 9 - 170955103 AAGGGAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807324 9 -   2996164 AAGGGAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558428 9 +    766320 AAGAGAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014571 9 -  71996105 AAGGGAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196721 9 +    290775 AAGAGAAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649843 9 -   3067355 AAGGGAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      13291 9 +    132061 AAGGGAAAC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233659 9 -   1771730 AAGGGAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           126244 9 +  18854210 GAGAGAAAG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53239 54 +    102524 I
e proCoq1.NW_012152574v1     610215 162 +    730504 I
e canFam3.chr35            26241968 169 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e aotNan1.NW_018509740v1     315703 8 -    457564 I
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=217466.000000
s hg38.chr6_GL000254v2_alt   904587 24 +   4827813 TCTTTCGTTAATAAACCCTCTCTA
s panTro5.chr6             29867355 24 + 175400573 TCTTTCGTTAATAAACCCTCTCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101716 24 + 173848474 TCTTTCGTTAATAAACCCTCTCTA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74612288 24 + 122973662 TCTTTCTTTAATAAACCCTCTCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096107 24 + 172585720 TCTTTCTTTAATAAACCCTCTCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759827 24 - 170955103 TCTTTCTTTAATAAACCCTCTCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807333 24 -   2996164 TCTTTCTTTAATAAACCCTCTCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558437 24 +    766320 TCTTTCTTTAATAAACCCTCTCTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014580 24 -  71996105 TCTTTCTTTAATAAACCCTCTCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196730 24 +    290775 TCTTTCTTTAATAAACCCTCTCTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649852 24 -   3067355 TCTTTCTTTAATAAACCCTCTCTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      13300 24 +    132061 TCTTTCTTTAATAAACCCTCTCTA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233668 24 -   1771730 TCTTTCTTTAATAACCCCTCTCTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315711 24 -    457564 TCTTTCTTTAATAAACCCTCTCTA
i aotNan1.NW_018509740v1   I 8 C 0
s otoGar3.GL873550           126253 24 +  18854210 TCTTTCTTTAACAAATCCCCTCAA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53239 54 +    102524 I
e proCoq1.NW_012152574v1     610215 162 +    730504 I
e canFam3.chr35            26241968 169 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=1400438.000000
s hg38.chr6_GL000254v2_alt   904611 155 +   4827813 TTGCTCCCCACACACAATCCTAGTTTGGTTGCtgtcttcg---------tctgtttgggctgccataacaaaatctcttgcaccgggtaacttatgaacaacag-aaatgtatttctgacagttctggaggccgggaaatccaagattaaggcactggcagattc
s panTro5.chr6             29867379 155 + 175400573 TTGCTCCCCACACACAATCCTAGTTTGGTTGCtgtcttcg---------tctgtttgggctgccataacaaaatctcttgcaccgggtaacttatgaacaacag-aaatgtatttctgacagttctggaggccgggaaatccaagattaaggcactggcagattc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101740 155 + 173848474 TTGCTCCCCACACACAATCCTAGTTTGGTTGCtgtcttcg---------tctgtttgggctgccataacaaaatctcttgcaccgggtaacttatgaacaacag-aaatatatttctgacagttctggaggccgggaaatccaagattaaggcactggcagattc
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74612312 155 + 122973662 TTGCTCCCCACACACAATCCTAGTTTGGTTGCtgttttcg---------tctgtttgggctgctataacaaaatctcttgcaccgggtaacttatgagcaacag-aaatatatttctgacagttctggaggctgggaaatccaagattaaggtactggcagattc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096131 155 + 172585720 TTGCTCCCCACACACAATTCTAGTTTGGTTGCtgtctttg---------tctatttgggctgctataacaaaatctcttatactgggtaacttatgaacaagaa-aaatgtatttctgacagttctggagactgggaaatccaagattaagttactggcagattc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29759851 155 - 170955103 TTGCTCCCCACACACAATTCTAGTTTGGTTGCtgtcttcg---------tctatttgggctgctataacaaaatctcttatactgggtaacttatgaacaagaa-aaatgtatttctgacagttctggagactgggaaatccaagattaagttactggcagattc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807357 155 -   2996164 TTGCTCCCCACACACAATTCTAGTTTGGTTGTtgtcttcg---------tctatttgggctgctataacaaaatctcttatactgggtaacttatgaacaagaa-aaatgtatttctgacagttctggagactgggaaatccaagattaagttactggcagattc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558461 155 +    766320 TTGCTCCCCACACACAATTCTAGTTTGGTTGCtgtcttcg---------tctatttgggctgctataacaaaatctcttgcactgggtaacttatgaacaagaa-aaatgtatttctgacagttctggagactgggaaatccaagattaagttactggcagattc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014604 155 -  71996105 TTGCTCCCCACACACAATTGTAGTTTGGTTGCtgtcttcg---------tctatttgggctgctataacaaaatctcttgcactgggtaacttatgaacaagaa-aaatgtatttctgacagttctggagactggaaaatccaagattaagttactggcagattc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196754 155 +    290775 TTGCTCCCCACACACAATTCTAGTTTGGTTGCtgtcttcg---------tctatttgggctgctataacaaaatctcttgcactgggtaacttatgaacaagaa-aaatgtatttctgacagttctggagactgggaaatccaagattaagttactggcagattc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2649876 153 -   3067355 TTGCTCCC--CACACAGTTCTAGTTTGGTTGCtgtcttcg---------tctatttgggctgctataacaaaatctcttgcactgggtaacttatgaacaagag-aaatgtatttctgacagttctggagactgggaaatccaagattaagttactggcagattc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      13324 155 +    132061 TTGCTCCCCACACACAATTCTAGTTTGGTTGCtgtcttca---------tctgtttgggctgctataacaaaatgccttacactgggtaacttatgaacaacag-aaatatatttctgacagttctggaggctgggaaccccaagattaaagcactggcagattc
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233692 155 -   1771730 TTGCTCCTCACACACAATTCTAGTTTGGTTGCtgtcttcg---------tctgtttgggctgctataacaaaatgccttacactgggtaacttatgaacaacag-aaatatatttctgacagttctggagactgggaaccccaagattaaggcagtggcagattc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315735 155 -    457564 TTGCTCCCCCCACACAATTCTAGTTTGGTTGCtgtcttca---------tctgtttgggctgccataacaaaatcccttacactgggtaacttatgaacaatag-aaatatatttctgacagttctggaggctgggaaccccaagcttaaggcactggcagattc
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     610377 156 +    730504 TTGCTCCCTACACACAATTCTAGTTTGGTTATtgtgttaa--------tctttcttgagctgctacaacaaaataccttg-actgggtaacacataaacaacagaaaatttattattggcagttctggaggcaggaaagcccaagattaaggccctggcagattc
i proCoq1.NW_012152574v1   I 162 I 904
s otoGar3.GL873550           126277 151 +  18854210 TTGCTCCCTACACACAATTCTAGTTTGGTTGTTGTCTTAAAAATAAATTTTTtttttagctgctataac-aaatacctca-actggataactcacaaacaacagaaaaattat------------tgaaagagtgaaaatcgaagattaagataccaacagatgc
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53239  54 +    102524 I
e canFam3.chr35            26241968 169 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=801789.000000
s hg38.chr6_GL000254v2_alt   904766 106 +   4827813 agtgtctggtgagggctggcttcctcatagac--tgccatct-gccatctgcgatctagctgtgtcttc-acatggt-ggaagggcaaacaagctccctggggcctctttt
s panTro5.chr6             29867534 106 + 175400573 agtgtctggtgagggctagcttcctcatagac--tgccatct-gccatctgcgatctagctgtgtcttc-acatggt-ggaagggcaaacaagctccctggggcctctttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30101895 106 + 173848474 agtgtctggtgagggctagcttcctcatagac--tgccatct-gccatctgcgatctagctgtgtcttc-acatggt-ggaagggcaaacaagctccctggggcctctttt
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74612467 106 + 122973662 agcatctggtgagggctggcttcctcacagac--ggccatct-gccatctgccatctagctgtgtcttc-acatggt-ggaagggcaaacaagctccctggggcctctttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096286 107 + 172585720 agtgtctggtgagggctggcttcctcatagac--tgccatct-gccatctgccatctagctgtgtcttc-acatggtagaaagggcaaacaagctccctggggcctcttgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760006 107 - 170955103 agtgtctggtgagggctggcttcctcatagac--tgccatct-gccatctgccatctagctgtgtcttc-acatggtagaaagggcaaacaagctccctggggcctcttgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807512 107 -   2996164 agtgtctggtgagggctggcttcctcatagac--tgccatct-gccatctgccatctagctgtgtcttc-acatggtagaaagggcaaacaagctccctggggcctcttgt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558616 107 +    766320 agtgtctggtgagggctggcttcctcatagac--tgccatgt-gccatctgccatctagctgtgtcttc-acatggtagaaagggcaaacaagctccctggggcctcttgt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014759 107 -  71996105 agtgtctggtgagggctggcttcctcatagac--tgccatct-gccatctgccatctagctgtgtcttc-acatggtagaaagggcaaacaagctccctggggcctcttgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     196909 107 +    290775 agtgtctggtgagggctggcttcctcatagac--tgccatgt-gccatctgccatctagctgtgtcttc-acatggtagaaagggcaaacaagctccctggggcctcttgt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2650029 108 -   3067355 agtgtctggtgagggctggcttcctcatagac--tgccatct-gccatctgccatctagctgtgtcttctacatgctagaaagggcaaacaagctccctggggcctcttgt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      13479  93 +    132061 agtgtctggtgatggctggctttctcatagac--tgcc---------------ttctagctgtgtcttc-acatggtggaaggggcaaacaagctccctggggcctctttt
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233847  93 -   1771730 agtgtctggtgatggctggcttcctcatagac--tgcc---------------ttctagctgtgttttt-acatggtggaaggagcaaacaatctccctggggcctctttt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315890  93 -    457564 agtgtctggtgatggctggcttcctcatagac--tgcc---------------ttctagttgtgtcttc-acatggtggaaggggcaaacaagctccctggggcctctttt
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           126428 103 +  18854210 agtgtctcatgagggcccactgcctcatagatgatgccttctagctat-----gtctagctatgtcctc-acgtggttgatggagcaaac-agctccct-gggcatctttt
i otoGar3.GL873550         C 0 I 715
e micMur3.chr6               121082 18287 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53239  54 +    102524 I
e proCoq1.NW_012152574v1     610533 904 +    730504 I
e canFam3.chr35            26241968 169 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=318015.000000
s hg38.chr6_GL000254v2_alt   904872 42 +   4827813 agaagggcactaatctcatttgcaaaagtccccaccacttaa
s panTro5.chr6             29867640 42 + 175400573 agaagggcactaatctcatttgcaaaagtccccaccacttaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102001 42 + 173848474 agaagggcactaatctcatttgcaaaagtccccaccacttaa
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74612573 42 + 122973662 agaagggcactaatctcatttgcaaaagtccccaccacttaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096393 42 + 172585720 agaagggcactaatctcattcacacaagtccccaccacttaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760113 42 - 170955103 agaagggcactaatctcattcacacaagtccccaccacttaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807619 42 -   2996164 agaagggcactaatctcattcacacaagtccccaccacttaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558723 42 +    766320 acaagggcactaatctcattcacacaagtccccaccacttaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014866 42 -  71996105 ataagggcactaatctcattcacacaagtccccaccacttaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     197016 42 +    290775 acaagggcactaatctcattcacacaagtccccaccacttaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2650137 42 -   3067355 ataagggcactaatctcattcacacaagtccccaccacttaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      13572 42 +    132061 ataatggcactaatctcacttgcaaaagtcctcaccacttaa
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233940 42 -   1771730 ataagggcactaatctcattcgcaaaagtcctcaccacttaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     315983 42 -    457564 ataagggcactaatctcatttgcaaaagtcctcaccatttaa
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e mm10.chr17               57943718 1415 -  94987271 I
e dasNov3.JH582591            53239 54 +    102524 I
e proCoq1.NW_012152574v1     610533 904 +    730504 I
e canFam3.chr35            26241968 169 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e otoGar3.GL873550           126531 715 +  18854210 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=567772.000000
s hg38.chr6_GL000254v2_alt   904914 69 +   4827813 taccacattgcattggggattaggtttcagaacatgaattttggggga-----acacaaacattcagaccatag
s panTro5.chr6             29867682 69 + 175400573 taccacattgcattggggattaggtttcagaacatgaattttggggga-----acacaaacattcagaccatag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102043 69 + 173848474 taccacattgcattggggattaggtttcagaacatgaattttggggga-----acacaaacattcagaccatag
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74612615 69 + 122973662 taccacattgcattggggattaggtttcagaacatgaattttggggga-----acacaaacattcagaccatag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096435 69 + 172585720 taccacatcacattggggattaggtttcagaacatgaattttggggga-----acacaaacattcagaccatag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760155 69 - 170955103 taccacatcacattggggattaggtttcagaacatgaattttggggga-----acacaaacattcagaccatag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807661 69 -   2996164 taccacatcacattggggattaggtttcagaacatgaattttggggga-----acacaaacattcagaccatag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558765 69 +    766320 taccacatcacattggggattaggtttcagaacatgaattttggggga-----acacaaacattcagaccatag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014908 69 -  71996105 taccacatcacattggggattaggtttcagaccatgaattttggggga-----acacaaacattcagaccatag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     197058 69 +    290775 taccacatcacattggggattaggtttcagaacatgaattttggggga-----acacaaacattcagaccatag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2650179 69 -   3067355 taccacatcacattggggattaggtttcagaacatgaattttgggaga-----acacaaacattcagaccatag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      13614 67 +    132061 tgc--cattgcactggggattaggttttagaacatgaattttggggga-----acacaaaaatacagaccatag
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     233982 67 -   1771730 tac--cactgcattagggattaggttttagaacatgaattttggggga-----acacaaaaatacagaccatag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     316025 67 -    457564 tac--cattgcattggggattaggttttagaacatgaattttggggga-----acacaaaaatacagaccatag
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57945133 71 -  94987271 tatcacactg---tgtgcattaggtctcagcatatgaattggaggagaagggtacacacacattcagaccacag
i mm10.chr17               I 1415 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e dasNov3.JH582591            53239 54 +    102524 I
e proCoq1.NW_012152574v1     610533 904 +    730504 I
e canFam3.chr35            26241968 169 +  26524999 I
e saiBol1.JH378357           239650 1573 -    242197 I
e otoGar3.GL873550           126531 715 +  18854210 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=31243.000000
s hg38.chr6_GL000254v2_alt   904983 3 +   4827813 caG
s panTro5.chr6             29867751 3 + 175400573 caG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102112 3 + 173848474 caG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74612684 3 + 122973662 caG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096504 3 + 172585720 caG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760224 3 - 170955103 caG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807730 3 -   2996164 caG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558834 3 +    766320 caG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014977 3 -  71996105 caG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     197127 3 +    290775 caG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2650248 3 -   3067355 caG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      13681 3 +    132061 caG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     234049 3 -   1771730 caA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     316092 3 -    457564 caG
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57945204 3 -  94987271 caA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26242137 3 +  26524999 CAG
i canFam3.chr35            I 169 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e dasNov3.JH582591            53239 54 +    102524 I
e proCoq1.NW_012152574v1     610533 904 +    730504 I
e saiBol1.JH378357           239650 1573 -    242197 I
e otoGar3.GL873550           126531 715 +  18854210 I
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=408708.000000
s hg38.chr6_GL000254v2_alt   904986 48 +   4827813 TTGTACATTCTTGGCAGTTCTGGCCTTGGTTTATTGTGCCAATAAA-------AG
s panTro5.chr6             29867754 48 + 175400573 TTGTACATTCTTGGCAGTTCTGGCCTTGGTTTATTGCGCCAATAAA-------AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102115 48 + 173848474 TTGTACATTCTTGGCAGTTCTGGCCTTGGTTTATTGCGCCAATAAA-------AG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74612687 55 + 122973662 TTGTACATTCTTGGCAGTTCTGGCCTTGGTTCATTGTGCCAATAAAAGGAAATAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096507 55 + 172585720 TTGTACATTCTTGGCATTTCTGGCCTTAGTTCTTCGTGCCAATAAAAGGACATAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760227 55 - 170955103 TTGTACATTCTTGGCATTTCTGGCCTTAGTTCTTCGTGCCCATAAAAGGACATAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807733 55 -   2996164 TTGTACATTCTTGGCATTTCTGGCCTTGGTTCTTCGTGCCAATAAAAGGACATAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558837 55 +    766320 TTGTACATTCTTGGCATTTCCGGCCTTGGTTCTTCGTGCCAATAAAAGGACATAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29014980 55 -  71996105 TTGTACATTCTTGGCATTTCTGGCCTTGGTTCTTCGTGCCAATAAAAGGACATAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     197130 55 +    290775 TTGTTCATTCTTGGCATTTCCGGCCTTGGTTCTTCGTGCCAATAAAAGGACATAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2650251 55 -   3067355 TTGTACATTCTTGGCATTTCTGGCCTTGGTTCTTTGTGCCAATAAAAGGACATAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      13684 48 +    132061 TTGTACATTCTTGGCATTTCTAGTCTTGGTTCATTGTGCCAGTAAAAG-------
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     234052 48 -   1771730 TTATACATTCTTGGCATTTCTAGCCTTGGTTCATTGTGTCAATAAAAG-------
i cebCap1.NW_016107755v1   C 0 I 331
s aotNan1.NW_018509740v1     316095 48 -    457564 CTGTACATTCTTGGCATTTCTAGCCTTGGTTCATTGTGTCAATAAAAG-------
i aotNan1.NW_018509740v1   C 0 I 332
s mm10.chr17               57945207 47 -  94987271 GTATGTATTCGTAACACTTCTGGCCTT-GTTCTTTGTTCCAGCCTAGG-------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26242140 40 +  26524999 TTGTACATTCTTGACACTGCTGGCCTTGGGGCTTGGTGCC---------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            53293 48 +    102524 TTGTACATTCTCCACACTTCCAGCCTTGGTTCTTTGTGCTAATGAAAG-------
i dasNov3.JH582591         I 54 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e proCoq1.NW_012152574v1     610533 904 +    730504 I
e saiBol1.JH378357           239650 1573 -    242197 I
e otoGar3.GL873550           126531 715 +  18854210 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=15462.000000
s hg38.chr6_GL000254v2_alt   905034 3 +   4827813 TAA
s panTro5.chr6             29867802 3 + 175400573 TAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102163 3 + 173848474 TAA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74612742 3 + 122973662 GAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096562 3 + 172585720 GAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760282 3 - 170955103 GAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807788 3 -   2996164 GAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558892 3 +    766320 GAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015035 3 -  71996105 GAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     197185 3 +    290775 GAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2650306 3 -   3067355 GAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      13732 3 +    132061 GAA
i calJac3.chrUn_GL286223   C 0 I 1008
s canFam3.chr35            26242180 3 +  26524999 TAG
i canFam3.chr35            C 0 I 5
s dasNov3.JH582591            53341 3 +    102524 GAA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e mm10.chr17               57945254 0 -  94987271 C
e proCoq1.NW_012152574v1     610533 904 +    730504 I
e saiBol1.JH378357           239650 1573 -    242197 I
e otoGar3.GL873550           126531 715 +  18854210 I
e aotNan1.NW_018509740v1     316143 332 -    457564 I
e cebCap1.NW_016107755v1     234100 331 -   1771730 I
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=7914.000000
s hg38.chr6_GL000254v2_alt   905037  4 +   4827813 ----------GCTC
s panTro5.chr6             29867805  4 + 175400573 ----------GCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102166  4 + 173848474 ----------GCTC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74612745  4 + 122973662 ----------GCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096565  4 + 172585720 ----------GCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760285  4 - 170955103 ----------GCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807791  4 -   2996164 ----------GCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558895  4 +    766320 ----------GCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015038  4 -  71996105 ----------GCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     197188  4 +    290775 ----------GCTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2650309  4 -   3067355 ----------GCTC
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57945254  4 -  94987271 ----------GCAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26242188  1 +  26524999 ----------G---
i canFam3.chr35            I 5 C 0
s dasNov3.JH582591            53344 13 +    102524 ACAGAGGAAAATT-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e proCoq1.NW_012152574v1     610533 904 +    730504 I
e saiBol1.JH378357           239650 1573 -    242197 I
e otoGar3.GL873550           126531 715 +  18854210 I
e aotNan1.NW_018509740v1     316143 332 -    457564 I
e cebCap1.NW_016107755v1     234100 331 -   1771730 I
e calJac3.chrUn_GL286223      13735 1008 +    132061 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=13299.000000
s hg38.chr6_GL000254v2_alt   905041 2 +   4827813 AT
s panTro5.chr6             29867809 2 + 175400573 AT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102170 2 + 173848474 AT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74612749 2 + 122973662 AT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096569 2 + 172585720 AT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760289 2 - 170955103 AT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807795 2 -   2996164 AT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558899 2 +    766320 AT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015042 2 -  71996105 AT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     197192 2 +    290775 AT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2650313 2 -   3067355 AT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      14743 2 +    132061 AC
i calJac3.chrUn_GL286223   I 1008 C 0
s mm10.chr17               57945258 2 -  94987271 AG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26242189 2 +  26524999 AT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            53357 2 +    102524 AC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e proCoq1.NW_012152574v1     610533 904 +    730504 I
e saiBol1.JH378357           239650 1573 -    242197 I
e otoGar3.GL873550           126531 715 +  18854210 I
e aotNan1.NW_018509740v1     316143 332 -    457564 I
e cebCap1.NW_016107755v1     234100 331 -   1771730 I
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=204710.000000
s hg38.chr6_GL000254v2_alt   905043 30 +   4827813 GAAGC-------TATTTCTATCAtgtctttacaggca
s panTro5.chr6             29867811 30 + 175400573 GAAGC-------TATTTCTATCAtgtctttacaggca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102172 30 + 173848474 GAAGC-------TATTTCTATCAtgtctttacaggca
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74612751 30 + 122973662 GAAGC-------TATTTCTATCATGTCTTTACAGGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096571 30 + 172585720 GAAGC-------TATTTCTATCAtgtctttacaggca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760291 30 - 170955103 GAAGC-------TATTTCTATCATGTCTTTACAGGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807797 30 -   2996164 GAAGC-------TATTTCTATCAtgtctttacaggca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558901 30 +    766320 GAAGC-------TATTTCTATCATGTCTTTACAGGCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015044 30 -  71996105 GAAGC-------TATTTCTATCAtgtctttacaggca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     197194 30 +    290775 GAAGC-------TATTTCTATCAtgtctttacaggca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2650315 30 -   3067355 GAAGC-------TATTTCTATCAtgtctttacaggca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      14745 21 +    132061 GAAGCT------TCTGTCTATCATGTC----------
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           241223 21 -    242197 GAAGCT------TATGTCTATCATGTC----------
i saiBol1.JH378357         I 1573 C 0
s mm10.chr17               57945260 37 -  94987271 GAAGATTGGTTATACTGCTGTTGAGCCTTTGCAACTA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26242191 28 +  26524999 -AGAG-------TATTTCTAGGA-GCCTTTACAGGCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            53359 30 +    102524 AAAGC-------TATTTCTATTATGACCTTACAGGCA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e proCoq1.NW_012152574v1     610533 904 +    730504 I
e otoGar3.GL873550           126531 715 +  18854210 I
e aotNan1.NW_018509740v1     316143 332 -    457564 I
e cebCap1.NW_016107755v1     234100 331 -   1771730 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=1822924.000000
s hg38.chr6_GL000254v2_alt   905073 188 +   4827813 tgtacaggtgagcccagtttgggagtcacaaaacttcagtgaaattaaaaagccacactatgagtacctgCACTAGCACTT-ACCACTCTCACACACAAGAATCCCTGAGGCAGTGGGGAT------CCTACCCCTGTCTC----------AGGAGTG------------------------------------CACAGAGCCAATAACCAAATTACAACATTGACATTGTGAAGTTGCCT
s panTro5.chr6             29867841 188 + 175400573 tgtacaggtgagcccagtttgggagtcacaaaacttcagtgaaattaaaaagccacactatgagtacctgCGCTAGCACTT-ACCACTCTCACACACAAGAATCCCTGAGGCAGTGGGGAT------CCTACCCCTGTCTC----------AGGAGTG------------------------------------CACAGAGCCAATAACCAAATTACAACATTGACATTGTGAAGTTGCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102202 188 + 173848474 tgtacaggtgagcccagtttgggagtcacaaaacttcagtgaaattaaaaagccacactatgagtacctgCGCTAGCACTT-ACCACTCTCACACACAAGAATCCCTGAGGCAGTGGGGAT------CCTACCCCTGTCTC----------AGGAGTG------------------------------------CACAGAGCCAATAACCAAATTACAACATTGACATTGTGAAGTTGCCT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74612781 188 + 122973662 TGTACAGGTGAGCCCAGTTTGGGAGTCACAAAACTTCAGTGAAATTAAAAAGCCACACTATGAATACCTGCGCTAGCACTT-ACCACCCTCACCCACAAGAATCCCTGAGGTAGTGGGGAT------CCTACCCCTGTTTC----------AGGAGTG------------------------------------CACAGAGCCAATAACCAGATTACAACGTTGACACTGTGAAGTTGCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096601 189 + 172585720 tgtacaggtgagcccagtttgggagtcataaaacttcagtgaaattaaaaagccacattatgaatacctgCGCTAACACTTAACCACCCTCACCCACAAGAAGCCCTGAGGTAGTGGGGAT------CCTACCCCTGTCTC----------AGGAGTA------------------------------------CCCAGAGCCCATAACCAGATTACAACGTTGACACTGTGAAGTTGCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760321 189 - 170955103 TGTACAGGTGAGCCCAGtttgggagtcataaaacttcagtgaaattaaaaagccacattatgaatacctgCGCTAACACTTAACCACCCTCACCCACAAGAAGCCCTGAGGTAGTGGGGAT------CCTACCCCTGTCTC----------AGGAGTA------------------------------------CCCAGAGCCCATAACCAGATTACAACGTTGACACTGTGAAGTTGCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2807827 189 -   2996164 tgtacaggtgagcccagtttgggagtcataaaacttcagtgaaattaaaaagccacattatgaatacctgCGTTAACACTTAACCACCCTCACCCACAAGAAGCCCTGAGGTAGTGGGGAT------CCTACCCCTGTCTC----------AGGAGTG------------------------------------CCCAGAGCCCATAACCAGATTACAACGTTGACACTGTGAAGTTGCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     558931 188 +    766320 TGTACAGGTTAGCCCAGtttgggagtcataaaacttcagtgaaattaaaaagccacattatgaatacctgCACTAACACTT-ACCACCCTCACCCACAAGAAGCCCTGAGGTAGTGGGGAT------CCTACCCCTGTCTC----------AGGAGTG------------------------------------CCCAGAGCCCATAACCAGATTACAACGTTGACACTGTGAAGTTGCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015074 188 -  71996105 tgtacaggtgagcccagtttgggagtcataaaacttcagtgaaattaaaaagccaccttatgaatacctgCGCTAACACTT-ACCACCCTCACCCACAAGAAGCCCTGAGGTAGTGGGGAT------CCTACCCCTTTCTC----------AGGAGTG------------------------------------CCCAGAGCCCATAACCAGATTACAACATTGACACTGTGAAGTTGCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     197224 188 +    290775 tgtacaggtgagcccagtttgggagtcataaaacttcagtgaaattaaaaagccacattatgaatacctgCACTAACACTT-ACCACCCTCACCCACAAGAAGCCCTGAGGTAGTGGGGAT------CCTACCCCTGTCTC----------AGGAGTG------------------------------------CCCAGAGCCCATAACCAGATTACAACGTTGACACTGTGAAGTTGCCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2650345 186 -   3067355 tgtacaggtgagcccagtttgggagtcacaaaac--cagtgaaattaaaaagccacattatgaatacctgCGCTAGCACTT-ACCACCCTCACCCACAAGAAGCCCTGAGGTAGTGGGGAT------CCTACCCCTGTCTC----------AGGAGTG------------------------------------CCCAGAGCCCATAACCAGATTACAACGTTGACACTGTGAAGTTGCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      14766 186 +    132061 TGTACAGGTGAGCCCAGTTTGGGAGTCACAAAACTTCAGTGAAATTAAAAAGCCACACTATGAATACCTGCACTAGCACTT-ACCACCCTCACCCACAAGAAGCCCTGAGGTAGTGGGGAG-------CTATCCTCGTCTC----------TGAAGTG------------------------------------CTCAGAGCC-ATAACCAGATTATAATATTGACACTGTGAAGTTGCCT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           241244 187 -    242197 GGTACAGGTGAGCCCAGTTTGGGAGTCACAAAACTTCAGTGAAATTAAAAAGCCACACTATGAATACCTGCACTAGCACTT-CCCACCCTCCCCCACAAGAAGCCCTGAGGTAGTGGGGAG-------CTACCCTCGCCTC----------AGAAGTG------------------------------------CTCAGAGCCAATAACCAGATTATAACATTGACACCGTGAAGTTGCCT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     234431 187 -   1771730 TGTACAGGTGAGCCCAGtttgggagtcacaaaacttcagtgaaattaaaaagccacactataaatacctgCACTAGCACTT-ACCACCCTCACCCGCAAGAAGCCCTGAGGTAGTGGGGAG-------CTATCCTCGCCTC----------AGAAGTG------------------------------------CTCAGAGCCAATAACCAGATTATAACATTGACACTGCGAAGTTGCCT
i cebCap1.NW_016107755v1   I 331 C 0
s aotNan1.NW_018509740v1     316475 187 -    457564 TGTACAGGCGAGCCCAGtttgggagtcacaaaacttcagtgaaattaaaaagccacactatgaatacttgCACTAGCACTT-ACCACCCTCACCCACAAGAAGCCCTGAGGTAGTGGGGAG-------CTACCCTCGTCTC----------AGAAGTG------------------------------------CTCTGAGCCAATAACCAGATTATAACATTGACACTATGAAGTTGCCT
i aotNan1.NW_018509740v1   I 332 C 0
s mm10.chr17               57945297 148 -  94987271 TACACAGGTAGGTCTAACCTAGAATTCACAAAATTTCAGTGAAAAAAGACAACGCCACCGTGAAACCCT----------TT-CTCTACCTCAC-----------------------------------GTCTCCCTGTCTC----------GGGGACA------------------------------------CTCAGAGCCAATAACCAGGTTACCAAGTTGGCAGTGTGAATTGGCT-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26242219 175 +  26524999 TGTATAGGGAAGCCCAGGATGGACTTGAGCAA--CTCAGAGAAATATAACAGCCACATCCCTAG-GCCTGCTCTGGAGCC--ACCTCCCT-ACCCAGAGGATGATCTGGGTCATGGGGGAG------------CTTGTCTC----------ACACCTG------------------------------------CT-GGGGCCAAGTGCCAGAATACAAAATTGACACCAC-CTGTTGCTC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            53389 239 +    102524 TACACAGGGGGGCCCAGACTGGAATTCACAAAATTTCAAGGAAATAAAAAAGCTACTTTGTGAATACCTGCTTTAGTACTT-ACCCCACT-ACCCACGAGACACAGTGATGTAGTGGAAAACCCTTGCCTGCTCTCTTCTCCTCCAGCTGAGGTAGTGGAGAAACCTTGCCCGCTCTCTCTTCTCTTTCTTGAACTCAGAAACAATAACCAGATTACCAAGTTGACAACTGGGAGTTGACT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e proCoq1.NW_012152574v1     610533 904 +    730504 I
e otoGar3.GL873550           126531 715 +  18854210 I
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=1350375.000000
s hg38.chr6_GL000254v2_alt   905261 126 +   4827813 CTAGAAATAATTTCTC-----------------AATAAGTACACCTTTATATAATAAGTGAATGAACACAATGTAATTAAATGCTAGATTAACCTAAGAAACAAAA-AGGAAAAT----AGCTTCTTTGTCCGTTCATCTACAGGATA
s panTro5.chr6             29868029 126 + 175400573 CTAGAAATAATTTCTC-----------------AATAAGTACACCTTTATATAATAAGTGAATAAACGCAATGTAATTAAATGCTAGATTAACCTAAGAAACAAAA-AGGAAAAT----AGCTTCTTTGTCCGTTCGTCTACAAGATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102390 126 + 173848474 CTAGAAATAATTTCTC-----------------AATAAGTACACCTTTATATAATAAGTGAATAAACACAATGTAATTAAATGCTAGATTAACCTAAGAAACAAAA-AGGAAAAT----AGCTTCTTTGTCCGTTCGTCTACAAGATA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74612969 130 + 122973662 CTAGAAATAATTTCTC-----------------AATAAGTACACATTTATATAATAAGTGAATGAACACAATGTAATTAAATGCTAGATTAACCTAAGAAACAAAA-AGGAAAATAGAAAGCTTCTTTGTCCATTCGTCTACAGGATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096790 128 + 172585720 CTAGAAATAATTTCTC-----------------AATAAGTACACCTTTATATAATAAGTGAATGAACACAATGTAATTAAA--TCTGATTAACCTAAGAAACAAAA-AGGAAAATAGAAAGCTTCTTTGTCCATTCATCTACAGGATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760510 128 - 170955103 CTAGAAATAATTTCTC-----------------AATAAGTACACCTTTATATAATAAGTGAATGAACACAATGTAATTAAA--TCTGATTAACCTAAGAAACAAAA-AGGAAAATAGAAAGCTTCTTTGTCCATTCATCTACAGGATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808016 128 -   2996164 CTAGAAATAATTTCTC-----------------AATAAGTACACCTTTATATAATAAGTGAATGAACACAATGTAATTAAA--TCTGATTAACTTAAGAAACAAAA-AGGAAAATAGAAAGCTTCTTTGTCCATTCATCTACAGGATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     559119 128 +    766320 CTAGAAATAATTTCTC-----------------AATAAGTACACCTTTATATAATAAGTGAATGAACACAATGTAATTAAA--TCTGATTAACCTAAGAAACAAAA-AGGAAAATAGAAAGCTTCTTTGTCCATTCATCTACAGGATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015262 128 -  71996105 CTAGAAATAATTTCTC-----------------AATAAGTACACCTTTATATAATAAGTGAATGAACACAATGTAATTAAA--TCTGATTAACCTAAGAAACAAAA-AGGAAAATAGAAAGCTTCTTTGTCCATTCATCTACAGGATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     197412 128 +    290775 CTAGAAATAATTTCTC-----------------AATAAGTACACCTTTATATAATAAGTGAATGAACACAATGTAATTAAA--TCTGATTAACCTAAGAAACAAAA-AGGAAAATAGAAAGCTTCTTTGTCCATTCATCTACAGGATA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2650531 130 -   3067355 CTAGAAATAATTTCTC-----------------AATAAGTACACCTTTATATAATAAGTGAATGAACACAATGTAATTAAATGTCTGATTAACTTAAGAAACAAAA-AGGAAAATAGAAAGCTTCTTTGTCCATTCATCTACAGGATA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      14952 130 +    132061 CTAGAAATAATTTCTC-----------------TGTAAGAACACCTTTATATAATAAGTGAAGTAACACAATGGAATTAAATGCTAGATTAACCTAAGCAACAAAA-TGGAAAATAGAAAGCTTCTTTGTCCATTCGTCTACAGGGTA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           241431 130 -    242197 CTAGAAATAATTTCTC-----------------TGTAAGTACACCTTTATATAATAAGTGAAGTAACACAATGGAATTAAATGCCAGATTAACCTAAGCAACGAAA-AGGAAAATAGAAAGCTTCTTTGTCCATTCGTCTACAGGGTA
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     234618 130 -   1771730 CTAGAAATAATTTCTC-----------------TGTAAGTACACCTTTGTATGGTAAGTGAAGTAACATAATGGAATTAAATGCTAGATTAACCTAAGCAACAAAA-AGGAAAATAGAAAGCTTCTTTGTCCATTCGTCTACAGGGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     316662 130 -    457564 CTAGAAATAATTTCTC-----------------TGTAAGTACACCTTTATATAATAAGTGAAGTAACACAATGGAATTAAATGCTAGATTAACCTAAGCAACAAAA-AGGAAAATAGAAAGCTTCTTTGTCCATTTGTCTACAGGGTA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     611437 126 +    730504 CTAGAAATAATTTCTT-----------------CATAAGTAAGTCCTTGTATAAGAAGTGAATGTACACAATTTAATTAAATAT----TTAACCTAAGCAACAAAA-CGGAAAATAGTAAGCTTGTTTGCCCATTCTTCTACTGGGCA
i proCoq1.NW_012152574v1   I 904 I 1
s mm10.chr17               57945445 117 -  94987271 CTATAAATAATGTCTC-----------------CGCGAATAAGTGCTTATGTAATAAGTGAATGGGCACAATGTAATTAAGTTTTAGAGTAACCAAGGCAATAATA-AATCAG---GAAAGCTTATC----------TTTACAGTATG
i mm10.chr17               C 0 I 1
s canFam3.chr35            26242394 144 +  26524999 CTGGAAATGATTTCTCTTCTATAATCTCTATTATAGAAGGGAGCCCTT-CATAATAAATAAATGAACACAGTGTAATGAGATGCTAC-TTAATCTGAACAACAGAA-AGGAAAATAGTTACCTAGTTTCTCCCTCCTTGTA-AGGGTA
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            53628 120 +    102524 CTATACATAATTTTTC-----------------CATAAGTA-ACTCTTCCATAATGAATGAATGAGCATAGTGTAATTAAGTA----------CTAAGCAACAAAATATGAAAATAATAACTGAGTATGTCCTTTCTTCCAAATACTA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               121082 18287 + 123392446 I
e otoGar3.GL873550           126531 715 +  18854210 I
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=304062.000000
s hg38.chr6_GL000254v2_alt   905387 24 +   4827813 ATGAGGTCATGTTAAAAGACTTAG
s panTro5.chr6             29868155 24 + 175400573 ATGAGGTCATGTTAAAAGACTTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102516 24 + 173848474 ATGAGGTCATGTTAAAAGACTTAG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74613099 24 + 122973662 ATGAGGTCATGTTAACAGACTTAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096918 24 + 172585720 ATGAGGTCATGTTAACAGACTTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760638 24 - 170955103 ATGAGGTCATGTTAACAGACTTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808144 24 -   2996164 ATGAGGTCATGTTAACAGACTTAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     559247 24 +    766320 ATGAGGTCATGTTAACAAACTTAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015390 24 -  71996105 ATGAGGTCATGTTAACAGACTTAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     197540 24 +    290775 ATGAGGTCATGTTAACAGACTTAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2650661 24 -   3067355 ATGATGTCATGTTAACAGACTTAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      15082 24 +    132061 ATGAGGTCAGGTTAACAGACTCAG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           241561 22 -    242197 ATGAGGTCAGGTTAAC--ACTCAG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     234748 24 -   1771730 ATGAGGTCAGGTTAACAGACTCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     316792 24 -    457564 ATGAGGTCAGGTTAACAGACTCAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               139369 24 + 123392446 ATGAAGTCAAGTTAAGAGATTTAG
i micMur3.chr6             I 18287 C 0
s proCoq1.NW_012152574v1     611564 24 +    730504 ATGAAGTCAGGTTAAGAGATTTAG
i proCoq1.NW_012152574v1   I 1 C 0
s mm10.chr17               57945563 24 -  94987271 ATGCGTATAGGCTAACTGACCTTG
i mm10.chr17               I 1 C 0
s canFam3.chr35            26242539 24 +  26524999 ATGAGGTCAGGTTAACAGATTTAG
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            53748 15 +    102524 ---------GGTTAACAGATTCAG
i dasNov3.JH582591         C 0 C 0
e otoGar3.GL873550           126531 715 +  18854210 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=185058.000000
s hg38.chr6_GL000254v2_alt   905411 15 +   4827813 AAAAGGTTCAGTTCT
s panTro5.chr6             29868179 15 + 175400573 AAAAGGTTCAGTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102540 15 + 173848474 AAAAGGTTCAGTTCT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74613123 15 + 122973662 AAAAGGTTCAGTTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096942 15 + 172585720 AAAAGGTTCAGTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760662 15 - 170955103 AAAAGGTTCAGTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808168 15 -   2996164 AAAAGGTTCAGTTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     559271 15 +    766320 AAAAGGTTCAGTTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015414 15 -  71996105 AAAAGGTTCAGTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     197564 15 +    290775 AAAAGGTTCAGTTCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2650685 15 -   3067355 AAAAGGTTCAGTTCT
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     234772 15 -   1771730 AAAAGGTTCAGCTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     316816 15 -    457564 AAAAGGTTCAGTTCT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               139393 15 + 123392446 AAAAGGTTCAGTTCT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     611588 15 +    730504 AAAAGGTTCAGTTCT
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57945587 15 -  94987271 ACCAGGCTCAGTTTT
i mm10.chr17               C 0 I 1621
s canFam3.chr35            26242563 15 +  26524999 AAAGCATTCCGTCCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            53763 15 +    102524 AAAGGGCTCAGTTCT
i dasNov3.JH582591         C 0 C 0
e saiBol1.JH378357           241583  0 -    242197 C
e otoGar3.GL873550           126531 715 +  18854210 I
e calJac3.chrUn_GL286223      15106  0 +    132061 C
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=13600.000000
s hg38.chr6_GL000254v2_alt   905426 1 +   4827813 C
s panTro5.chr6             29868194 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102555 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74613138 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096957 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760677 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808183 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     559286 1 +    766320 C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015429 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     197579 1 +    290775 C
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2650700 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     234787 1 -   1771730 C
i cebCap1.NW_016107755v1   C 0 I 54
s aotNan1.NW_018509740v1     316831 1 -    457564 C
i aotNan1.NW_018509740v1   C 0 I 54
s micMur3.chr6               139408 1 + 123392446 C
i micMur3.chr6             C 0 I 1141
s proCoq1.NW_012152574v1     611603 1 +    730504 C
i proCoq1.NW_012152574v1   C 0 I 75
s canFam3.chr35            26242578 1 +  26524999 C
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            53778 1 +    102524 C
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57945602 1621 -  94987271 I
e saiBol1.JH378357           241583 0 -    242197 C
e otoGar3.GL873550           126531 715 +  18854210 I
e calJac3.chrUn_GL286223      15106 0 +    132061 C
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=933.000000
s hg38.chr6_GL000254v2_alt   905427 2 +   4827813 -CT
s panTro5.chr6             29868195 2 + 175400573 -CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102556 2 + 173848474 -CT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74613139 2 + 122973662 -Cg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096958 2 + 172585720 -Cg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760678 2 - 170955103 -Cg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808184 2 -   2996164 -CA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     559287 2 +    766320 -Cg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015430 2 -  71996105 -Cg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     197580 2 +    290775 -Cg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2650701 2 -   3067355 -Cg
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35            26242579 2 +  26524999 AC-
i canFam3.chr35            C 0 I 55
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57945602 1621 -  94987271 I
e dasNov3.JH582591            53779 0 +    102524 C
e proCoq1.NW_012152574v1     611604 75 +    730504 I
e saiBol1.JH378357           241583 0 -    242197 C
e otoGar3.GL873550           126531 715 +  18854210 I
e aotNan1.NW_018509740v1     316832 54 -    457564 I
e cebCap1.NW_016107755v1     234788 54 -   1771730 I
e calJac3.chrUn_GL286223      15106 0 +    132061 C
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=566227.000000
s hg38.chr6_GL000254v2_alt   905429 119 +   4827813 gccgggcgccgtggctcatgcctttaatcccagcactttgggaggcctaggcgggcggatcacctgagatcaggagtttgagaccagcctaaccaacatggagaaaccacccatctact
s panTro5.chr6             29868197 119 + 175400573 gccgggcgccgtggctcatgcctttaatcccagcactttgggaggcctaggcgggcggatcacctgagatcaggagtttgagaccagcctaaccaacatggagaaaccacccatctact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102558 119 + 173848474 gccgggcgccgtggctcatgcctttaatcccagcactttgggaggcctaggcgggcggatcacctgagatcaggagtttgagaccagcctaaccaacatggagaaaccacccatctact
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74613141 119 + 122973662 gccgggtgccatggcgcatgcctttaatcccagcattttgggaggcctaggcgggcggatcacctgagatcaggagtttgagaccagcctaaccaacatggagaaaccacatctctact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30096960 119 + 172585720 gccaggcgccgttgttcacgcctgtgatcccagcactttgggaggcctaggtgggcggatcacctgagatcaggagttcaagaccagcctaaccaacatggagaaaccacatctctact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760680 119 - 170955103 gccaggcgccgttgttcacgcctgtgatcccagcactttgggaggcctaggtgggcggatcacctgagatcaggagttcaagaccagcctaaccaacatggagaaaccacatctctact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808186 119 -   2996164 gccaggcgccgttgttcacgcctgtgatcccagcactttgggaggcctaggtgggcggatcacctgagatcaggagttcaagaccagcctaaccaacatggagaaaccacatctctact
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     559289 119 +    766320 gccaggcgccattgttcacgcctgtgatcccagcactttgggaggcctaggtgggcggatcacctgagatcaggagttcaagaccagcctaaccaacatggagaaaccacatccctact
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015432 119 -  71996105 gccaggcgccgttgttcacgcctgtgatcccagcactttgggaggcctaggtgggtggatcacctgagatcaggagttcaagaccagcctaaccaacatggagaaaccacatctctact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     197582 119 +    290775 gccaggcgccattgttcacgcctgtgatcccagcactttgggaggcctaggtgggcggatcacctgagatcaggagttcaagaccagcctaaccaacatggagaaaccacatccctact
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2650703 119 -   3067355 gccggacgccgtggttcacgcctgtgatcccagcactttgggaggcctaggtgggcggatcacctgagatcaggagttcaagaccagcctaaccaacatggagaaaccacatctctact
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57945602 1621 -  94987271 I
e dasNov3.JH582591            53779   0 +    102524 C
e proCoq1.NW_012152574v1     611604  75 +    730504 I
e canFam3.chr35            26242581  55 +  26524999 I
e saiBol1.JH378357           241583   0 -    242197 C
e otoGar3.GL873550           126531 715 +  18854210 I
e aotNan1.NW_018509740v1     316832  54 -    457564 I
e cebCap1.NW_016107755v1     234788  54 -   1771730 I
e calJac3.chrUn_GL286223      15106   0 +    132061 C
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=114356.000000
s hg38.chr6_GL000254v2_alt   905548 21 +   4827813 aaaaatacaaaattagtcggc
s panTro5.chr6             29868316 21 + 175400573 aaaaatacaaaattagtcggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102677 21 + 173848474 aaaaatacaaaattagtcggc
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74613260 21 + 122973662 aaaaatacaaaattagtcggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30097079 21 + 172585720 aaaaatacaaaattagtcggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760799 21 - 170955103 aaaaatacaaaattagtcggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808305 21 -   2996164 aaaaatacaaaattagtcggc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     559408 21 +    766320 aaaaatacaaaattagtcagc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015551 21 -  71996105 aaaaatacaaaattagtcggt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     197701 21 +    290775 aaaaatgcaaaattagtcagc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2650822 21 -   3067355 aaaaatacaaaattagtcagc
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH582591            53779 21 +    102524 ACAAACACAAATTTAGTAAGC
i dasNov3.JH582591         C 0 I 45
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57945602 1621 -  94987271 I
e proCoq1.NW_012152574v1     611604 75 +    730504 I
e canFam3.chr35            26242581 55 +  26524999 I
e saiBol1.JH378357           241583  0 -    242197 C
e otoGar3.GL873550           126531 715 +  18854210 I
e aotNan1.NW_018509740v1     316832 54 -    457564 I
e cebCap1.NW_016107755v1     234788 54 -   1771730 I
e calJac3.chrUn_GL286223      15106  0 +    132061 C
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=462287.000000
s hg38.chr6_GL000254v2_alt   905569 96 +   4827813 catggtggtgcatgcctgtaatcccacctactcgggaggctgaggcaagagaatcgcttgaacccaggagctggaggttgcagtgagctgagattg
s panTro5.chr6             29868337 96 + 175400573 catggtggtgcatgcctgtaatcccacctactcgggaggctgaggcaagagaatcgcttgaacccaggagctggaggttgcagtgagctgagattg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102698 96 + 173848474 catggtggtgcatgcctgtaatcccacctactcgggaggctgaggcaagagaatcgcttgaacccaggagctggaggttgcagtgagctgagattg
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74613281 95 + 122973662 catggtggtgcatatctgtaattccacctacttgggaggctgaggcaggagaatcgcttgaaccca-gagttggaggttgcagtgagccgagactg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30097100 96 + 172585720 cgtggtgatgcatgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggagctggaggttgcagtgagccgagattg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760820 96 - 170955103 cgtggtgatgcatgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggagctggaggttgcagtgagccgagattg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808326 96 -   2996164 cgtggtgatgcatgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggagctggaagttgcagtgagccgagattg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     559429 96 +    766320 catagtgatgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggagctggaggttgcagtgagccgagattg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015572 96 -  71996105 cgtggtgatgcatgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggagctggaggttgcagtgagctgagattg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     197722 96 +    290775 catagtgatgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggagctggaggttgcagtgagccgagattg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2650843 96 -   3067355 cgtggtggtgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggagctgagggttgcagtgagccgagattg
i colAng1.NW_012115566v1   C 0 M 985
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57945602 1621 -  94987271 I
e dasNov3.JH582591            53800 45 +    102524 I
e proCoq1.NW_012152574v1     611604 75 +    730504 I
e canFam3.chr35            26242581 55 +  26524999 I
e saiBol1.JH378357           241583  0 -    242197 C
e otoGar3.GL873550           126531 715 +  18854210 I
e aotNan1.NW_018509740v1     316832 54 -    457564 I
e cebCap1.NW_016107755v1     234788 54 -   1771730 I
e calJac3.chrUn_GL286223      15106  0 +    132061 C
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=20127.000000
s hg38.chr6_GL000254v2_alt   905665 10 +   4827813 tgccattgca
s panTro5.chr6             29868433 10 + 175400573 taccattgca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102794 10 + 173848474 tgccattgca
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74613376 10 + 122973662 tgtcattgca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30097196  7 + 172585720 tgccatt---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760916  7 - 170955103 tgccatt---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808422  7 -   2996164 tgccatt---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     559525  7 +    766320 tgccatt---
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015668 10 -  71996105 tgccattgca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     197818 10 +    290775 tgccattgca
i manLeu1.NW_012099233v1   C 0 I 922
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57945602 1621 -  94987271 I
e dasNov3.JH582591            53800 45 +    102524 I
e proCoq1.NW_012152574v1     611604 75 +    730504 I
e canFam3.chr35            26242581 55 +  26524999 I
e saiBol1.JH378357           241583  0 -    242197 C
e otoGar3.GL873550           126531 715 +  18854210 I
e aotNan1.NW_018509740v1     316832 54 -    457564 I
e cebCap1.NW_016107755v1     234788 54 -   1771730 I
e calJac3.chrUn_GL286223      15106  0 +    132061 C
e colAng1.NW_012115566v1    2650939 985 -   3067355 M
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=33396.000000
s hg38.chr6_GL000254v2_alt   905675 24 +   4827813 ctccagcctgggcaacaggcaaaa
s panTro5.chr6             29868443 24 + 175400573 ctccagcctgggcaacaggcaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102804 24 + 173848474 ctccagcctgggcaacaggcaaaa
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74613386 23 + 122973662 ctccagcct-agCAACAAGCAAAA
i nomLeu3.chr1a            C 0 M 100
s rheMac8.chr4             30097203 13 + 172585720 -----------gcaacaagcaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760923 13 - 170955103 -----------gcaacaagcaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808429 13 -   2996164 -----------gcaacaagcaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     559532 13 +    766320 -----------gcaacaagcaaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015678 10 -  71996105 --------------acaagcaaaa
i chlSab2.chr17            C 0 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57945602 1621 -  94987271 I
e dasNov3.JH582591            53800 45 +    102524 I
e proCoq1.NW_012152574v1     611604 75 +    730504 I
e canFam3.chr35            26242581 55 +  26524999 I
e saiBol1.JH378357           241583  0 -    242197 C
e otoGar3.GL873550           126531 715 +  18854210 I
e aotNan1.NW_018509740v1     316832 54 -    457564 I
e cebCap1.NW_016107755v1     234788 54 -   1771730 I
e calJac3.chrUn_GL286223      15106  0 +    132061 C
e colAng1.NW_012115566v1    2650939 985 -   3067355 M
e manLeu1.NW_012099233v1     197828 922 +    290775 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=27584.000000
s hg38.chr6_GL000254v2_alt   905699 21 +   4827813 ctgtctcc----------aaaaaaaaaaaaa
s panTro5.chr6             29868467 20 + 175400573 ctgtctcc-----------aaaaaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102828 18 + 173848474 ctgtctcc-------------aaaaaaaaaa
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30097216 31 + 172585720 gtatctcaaaaaaaaaaaaaaaaagaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760936 31 - 170955103 gtatctcaaaaaaaaaaaaaaaaagaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808442 24 -   2996164 gtatctc-------aaaaaaaaaagaaaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     559545 29 +    766320 gtatctc--aaaaaaaaaaaaaaagaaaaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015688 30 -  71996105 gtgtctc-aaaaaaaaaaagaaaagaaaaaa
i chlSab2.chr17            C 0 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57945602 1621 -  94987271 I
e dasNov3.JH582591            53800 45 +    102524 I
e proCoq1.NW_012152574v1     611604 75 +    730504 I
e canFam3.chr35            26242581 55 +  26524999 I
e saiBol1.JH378357           241583  0 -    242197 C
e otoGar3.GL873550           126531 715 +  18854210 I
e aotNan1.NW_018509740v1     316832 54 -    457564 I
e cebCap1.NW_016107755v1     234788 54 -   1771730 I
e calJac3.chrUn_GL286223      15106  0 +    132061 C
e colAng1.NW_012115566v1    2650939 985 -   3067355 M
e manLeu1.NW_012099233v1     197828 922 +    290775 I
e nomLeu3.chr1a            74613409 100 + 122973662 M
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=147734.000000
s hg38.chr6_GL000254v2_alt   905720 38 +   4827813 aaaaGGTTCAGTTCTCATAAACACAAATTTAATGAGCA
s panTro5.chr6             29868487 38 + 175400573 aaaaGGTTCAGTTCTCATAAACACAAATTTAATGAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102846 38 + 173848474 aaaaGGTTCAGTTCTCATAAACACAAATTTAATGAGCA
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30097247 38 + 172585720 gaaaGGCTCAGTTCTCATAAACACAAATTTAGTAAGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29760967 38 - 170955103 gaaaGGCTCAGTTCTCATAAACACAAATTTAGTAAGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808466 38 -   2996164 gaaaGGCTCAATTCTCATAAACACAAATTTAGTGAGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     559574 38 +    766320 gaaaGGTTCAGTTCTCATAAACACAAATTTAGTGAGCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015718 38 -  71996105 gaaaGGTTCAGTTCTCATAAACACAAATTTAGTGAGCA
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      15106 38 +    132061 AAAAGGTTCAGTTCTCATAAATACAAATTTAGTGAGCA
i calJac3.chrUn_GL286223   C 0 I 32
s saiBol1.JH378357           241583 38 -    242197 AAAAGGTTCAGTTCTCATAAACACAAATTTAGTGAGCA
i saiBol1.JH378357         C 0 I 32
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57945602 1621 -  94987271 I
e dasNov3.JH582591            53800 45 +    102524 I
e proCoq1.NW_012152574v1     611604 75 +    730504 I
e canFam3.chr35            26242581 55 +  26524999 I
e otoGar3.GL873550           126531 715 +  18854210 I
e aotNan1.NW_018509740v1     316832 54 -    457564 I
e cebCap1.NW_016107755v1     234788 54 -   1771730 I
e colAng1.NW_012115566v1    2650939 985 -   3067355 M
e manLeu1.NW_012099233v1     197828 922 +    290775 I
e nomLeu3.chr1a            74613409 100 + 122973662 M
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=6006.000000
s hg38.chr6_GL000254v2_alt   905758 1 +   4827813 T
s panTro5.chr6             29868525 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102884 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30097285 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29761005 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808504 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     559612 1 +    766320 T
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015756 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      15176 1 +    132061 T
i calJac3.chrUn_GL286223   I 32 C 0
s saiBol1.JH378357           241653 1 -    242197 T
i saiBol1.JH378357         I 32 C 0
s cebCap1.NW_016107755v1     234842 1 -   1771730 T
i cebCap1.NW_016107755v1   I 54 C 0
s aotNan1.NW_018509740v1     316886 1 -    457564 T
i aotNan1.NW_018509740v1   I 54 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57945602 1621 -  94987271 I
e dasNov3.JH582591            53800 45 +    102524 I
e proCoq1.NW_012152574v1     611604 75 +    730504 I
e canFam3.chr35            26242581 55 +  26524999 I
e otoGar3.GL873550           126531 715 +  18854210 I
e colAng1.NW_012115566v1    2650939 985 -   3067355 M
e manLeu1.NW_012099233v1     197828 922 +    290775 I
e nomLeu3.chr1a            74613409 100 + 122973662 M
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=106534.000000
s hg38.chr6_GL000254v2_alt   905759 17 +   4827813 TTTGAAGATCTCAAAAT
s panTro5.chr6             29868526 17 + 175400573 TTTAAAGATCTCAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102885 17 + 173848474 TTTAAAGATCTCAAAAT
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30097286 17 + 172585720 TTTAAAGATCTCAAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29761006 17 - 170955103 TTTAAAGATCTCAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808505 17 -   2996164 TTTAAAGATCTCAAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     559613 17 +    766320 TTTAAAGATCTCAAAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015757 17 -  71996105 TTTAAAGATCTCAAAAT
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      15177 17 +    132061 TTTGAAGatttaaaaat
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           241654 17 -    242197 TTTGAAGATTTCAAAAT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     234843 17 -   1771730 TTTGAAGATTTCAAAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     316887 17 -    457564 TTTGAAGACGTCAAAAT
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26242636 17 +  26524999 TCTAAAGACGTCACAAC
i canFam3.chr35            I 55 I 4
s dasNov3.JH582591            53845 17 +    102524 TTTCAAGACTTTTAAAA
i dasNov3.JH582591         I 45 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57945602 1621 -  94987271 I
e proCoq1.NW_012152574v1     611604 75 +    730504 I
e otoGar3.GL873550           126531 715 +  18854210 I
e colAng1.NW_012115566v1    2650939 985 -   3067355 M
e manLeu1.NW_012099233v1     197828 922 +    290775 I
e nomLeu3.chr1a            74613409 100 + 122973662 M
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=178082.000000
s hg38.chr6_GL000254v2_alt   905776 21 +   4827813 AAGTATTATATTTAATTAAAC
s panTro5.chr6             29868543 21 + 175400573 AAGTATTATATTTAATTAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102902 21 + 173848474 AAGTATTATATTTAATTAAAC
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30097303 21 + 172585720 AAGTATTATATTTAATTAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29761023 21 - 170955103 AAGTATTATATTTAATTAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808522 21 -   2996164 AAGTATTATATTTAATTAAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     559630 21 +    766320 AAGTATTATATTTAATTAAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015774 21 -  71996105 AAGTATTATATTTAATTAAAC
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      15194 21 +    132061 aagtattatatttaattaaaC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           241671 21 -    242197 AAGCATTATATTTAATTAAAC
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     234860 21 -   1771730 AAGCATTATATTTAATTAAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     316904 21 -    457564 AAGTATTATATTTAATTAAAC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     611679 21 +    730504 AAGTATTATGTTTAATTAAAT
i proCoq1.NW_012152574v1   I 75 C 0
s canFam3.chr35            26242657 21 +  26524999 AAGTGTTATGTTGAGTTAAAT
i canFam3.chr35            I 4 C 0
s dasNov3.JH582591            53862 21 +    102524 AGGCATTATGTTTAATTATAT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57945602 1621 -  94987271 I
e otoGar3.GL873550           126531 715 +  18854210 I
e colAng1.NW_012115566v1    2650939 985 -   3067355 M
e manLeu1.NW_012099233v1     197828 922 +    290775 I
e nomLeu3.chr1a            74613409 100 + 122973662 M
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=807130.000000
s hg38.chr6_GL000254v2_alt   905797 104 +   4827813 ATGTGTAATTAAGTATATACT-GGTATGAATATCTAC---------AAATAATTATTCATACTAATCT-----GAAAAACGTATGCATCATAATGTGTGTATATAATTGGT--------TGCTAGGG
s panTro5.chr6             29868564 104 + 175400573 ATGTGTAATTAAGTATATACT-GGTATGAATGTCTAC---------AAATAATTATTCATACTAATCT-----GAAAAACGTATGCATCATAATGTGTGTATATAATTGGT--------TGCTAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30102923 104 + 173848474 ATGTGTAATTAAGTATATACT-GGTATGAATGTCTAC---------AAATAATTATTCATACTAATCT-----GAAAAACGTATGCATCATAATGTGTGTATATAATTGGT--------TGCTAGGG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74613512 103 + 122973662 ACGTGTAATTAAGTATATACT-GGTGTGAATATTT-C---------AAATAATTATTCATACTAATCT-----GAAAAACATATGCGTCATAATGTGTGTATGTAATTGGT--------TGCTAGGG
i nomLeu3.chr1a            M 100 I 317
s rheMac8.chr4             30097324 104 + 172585720 ATGTGTAATTAAGTATATACT-GGTATGAATATCTAC---------AATTAATTATTCCTACTAATCT-----GAAAAACATATGCATCATAATGTGTGTATGTAATTGGT--------TGCTAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29761044 104 - 170955103 ATGTGTAATTAAGTATATACT-GGTATGAATATCTAC---------AATTAATTATTCATACTAATCT-----GAAAAACATATGCATCATAATGTGTGTATGTAATTGGT--------TGCTAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808543 104 -   2996164 ATGTGTAATTAAGTATATACT-GGTATGAATATCTAC---------AATTAATTATTCATACTAATCT-----GAAAAACATATGCATCATAATGTGTGTATGTAATTGGT--------TGCTAGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     559651 100 +    766320 ATGTGTAATTAAGTATATACT-GGTATGAATATCTAC-------------AATTATTCATACTAATCC-----GAAAAACATATGCATCATAATGTGTGTATGTAATTGGT--------TGCTAGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015795 104 -  71996105 ATGTATAATTAAGTATATACT-GGTATGAATATCTAC---------AATTAATTATTCATACTAATCT-----GAAAAACATATGCATCATAATGTGTGTATGTAATTGGT--------TGCTAGGG
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      15215 104 +    132061 ATGTATAATTAAGTACATACT-GGTATGAATATCTAC---------AAATAATTATTCATACTAATAT-----GAAAAACCTATGCATCATAATGTATGTATGTAATTGGT--------TGATACGG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           241692 104 -    242197 ATGTATAATTAAGTATATACT-GGTATGAATATCTAT---------AAATAATTATTCATACTAATCT-----GAAAAACCTATGTGTCATAATGTATGTATGTAATTGGT--------TGATATGG
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     234881 104 -   1771730 ATGTATAATTAAGTATATGCT-GGTATGAATATCTAT---------AAATAATTATTCATACTAATCT-----GAAAAACCTATGCGTCATAATGTATGTATGTAATTGGT--------TGATATGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     316925 100 -    457564 ATGTATAATTAAGTATATACT-GGTATGAATATCTAT---------AAATAATT----ATACTAATCT-----GAAAAACCTATGTGTCATAATGTATGTGTGTAATTGGT--------TGATATGC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     611700 101 +    730504 AGATATAATTATGTATATTTT-GATATGAATATCTAT---------ACATAATTATCTATACCAGTCT-----GAAAAGCACAT---TCATCATGTGTGtttgcaattggt--------tggtaggg
i proCoq1.NW_012152574v1   C 0 C 0
s canFam3.chr35            26242678 127 +  26524999 ATATGTAATTACGTACCTACGAGATATGAATATTCATACCAGCCCAAGAAGGCTATGTATCTTTTTTTTTTTCAAGAAACATATGCATCATAATGCACGTATGCATTTGGGCAGTGAGATGGTAGGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            53883  98 +    102524 -----ACATTAAGTGTATACCAGGTATGTATACCTAT-------ATAGATAATTATTCAAGCCAATCA-----GAAAAGTATATGCATCATAATATTTG----CAATCGGT--------TGGTAGGG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57945602 1621 -  94987271 I
e otoGar3.GL873550           126531 715 +  18854210 I
e colAng1.NW_012115566v1    2650939 985 -   3067355 M
e manLeu1.NW_012099233v1     197828 922 +    290775 I
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=1437802.000000
s hg38.chr6_GL000254v2_alt   905901 177 +   4827813 GATTTGTTTGTTCATTTTGCTGCAATAGATTTCTGTCTCTCGTCATATTCTGTTCAAGTACCTAAAATGATTGCTCACTTATTCGA--------AGCACACTAATGAAATAATACTCAGAGTAAAAG-GAT-ATATCACCCAGATTTTTCTATTAGAAGCTACACAATACTCAAAAATCTATCATTT
s panTro5.chr6             29868668 177 + 175400573 GATTTGTTTGTTCATTTTGCTGCAATAGATTTCTGTCTCTCGTCATATTCTGTTCAAGTACCTAAAATGATTGCTCACTTATTCGA--------AGCACACTAATGAAATAATACTCAGAGTAAAAG-GAT-ATATCACCCAGATTTTTCTATTAGAAGCTACACAATACTCAAAAATCTATCATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30103027 177 + 173848474 GATTTGTTTGTTCATTTTGCTGCAATAGATTTCTGTCTCTCGTCATATTCTGTTCAAGTACCTAAAATGATTGCTCACTTATTCGA--------AGCACACTAATGAAATAATACTCAGAGTAAAAG-GAT-ATATCACCCAGATTTTTCTATTAGAAGCTACACAATACTCAAAAATCTATCATTT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74613932 177 + 122973662 GTTTTGTTTGTTCATTTTGCTGCAATAGATTTCTGTCTCTCGTCATATTCTGTTCAAGTACCTAAAATGATTGTTCACTTATTCAA--------AGCACACTAATCAAATAATACTCAGAGTAAACG-GAT-ACAGCACCCAGATTTTTCTATTAGAAGCTACACAATACTCAAAAATCTATCATTT
i nomLeu3.chr1a            I 317 C 0
s rheMac8.chr4             30097428 176 + 172585720 GTTTTGTTTGTTCATTTTGCTGCAATAGATTTCTTTCTCTCGTCATATTCTGTTCAAATA-CTAAAATGATTGTTCGCTTATTCAA--------AGCATACTAATCAAATAATACTCAGAGTAAAAG-GAT-ATATCACCCAGATTTTTCTATTAGAAGCTACACAGTACTCAAAAATCTATCATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29761148 176 - 170955103 GTTTTGTTTGTTCattttgctgcaatagatttctttctctcgtcatattctgttcaaata-ctaaaatgattgttcgcttattcaa--------agcatactaatcaaataatactcagagtaaaag-gAT-ATATCACCCAGATTTTTCTATTAGAAGCTACACAGTACTCAAAAATCTATCATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808647 176 -   2996164 GTTTTGTTTGTTCATTTTGCTGCAATAGATTTCTTTCTCTCGTCATATTCTGTTCAAATA-CTAAAATGATTGTTCGCTTATTCAA--------AGCATACTAATCAAATAATACTCAGAGTAAAAG-GAT-ATATCACCCAGATTTTTCTATTAGAAGCTACACAGTACTCAAAAATCTATCATTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     559751 176 +    766320 GTTTTGTTTGTTCATTTTGCTGCAATAGATTTCTGTCTCTCGTCATATTCTGTTCAAATA-CTAAAATGATTGTTTGCTTATTCAA--------AGCATACTAATCAAATAATACTCAGAGTAAAAG-GAT-ATATCACCCAGATTTTTCTATTAGAAGCTACACAGTACTCAAAAATCTATCATTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29015899 174 -  71996105 GTTTTGTTTGTTCATTTTGCTGCAATAGATTTCTG--TCTCGTCATATTCTGTTCAAATA-CTAAAATGATTGTTCGCTTATTCAA--------AGCATACTAATCAAATAATACTCAGAGTAAAAG-GAT-ATATCACTTAGATTTTTCTATTAGAAGCTACACAGTACTCAAAAATCTATCATTT
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      15319 175 +    132061 GTTTTGTTTGTTCATTTTGCTGTAACAGATTTCTCTCTCTCATTATATTCTGTTCAAGCACCTGGAATAATTATTCACTGATTCAA--------AGTACACTAATCAAATAATACTCAGAGTAAAAG---C-ATATCACCCAGATTTTTCTATTGGAAACTGCCCAATACTCGAAAATCTATCCTTT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           241796 177 -    242197 GTTTTGTTTGTTCATTTTGCGGCAACAGATTTCTCTCTCTCATTATATTCTGTTCAAGTACCTAGAATAATTATTCACTGATTAAA--------AGTATGCTAATCAAATAATACTCAGAGTAAAAG-CAC-ATATCACCCAGATTTTTCTATTAGAAACTGCCCAATAATCAAAAATCTATCCTTT
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     234985 177 -   1771730 GTTTTGTTTGTTCATTTTGCTGTAACAGATTTCTCTCTCTCATTATATTCTGTTCAAGTACCTAGAATAATTATTCACTGATTCAA--------AGTACACTAATCAAATAATACTCAGAGTAAAAA-CAA-ATATCACCCAGATTTTTCTATTAGAAACTGCCCAATACTTGAAAATCTATCCTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     317025 177 -    457564 GTTTTGTTTGTTCATTTTGCAGCAACAGATTTCTCTCTCTCATTATATTCTGTTCAAGTACCTAGCATAATTATTCACTGATTCAA--------AGTACACTAATCAAATAATACTCATAGTAAAAA-CAC-ATATCACCCAGATTTTTCTATTAGAAACTGCCCAATACTCGAAAATCTATCCTTT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     611801 173 +    730504 ----tttttgttcattttgctgcaacagatttgtctctcttatcatgttcagttcgggtacctataaagatggttcatttgttcaa--------cagacactaaccaaATGCCACTCAGAGTAAAAA-GAC-ACATCATCCAGATTTTTCTATTAGAAGGTACAGTATACTGAAATACCTACCATTT
i proCoq1.NW_012152574v1   C 0 C 0
s canFam3.chr35            26242805 183 +  26524999 GTTTTGTCTGTTCATTTTGCTGCAACAGATTTCT--CTCTCATTATGTCCAGTTCAGGAATCGATAATGATTGTTCATTTATTCAGAGCTCACTAGCACACTATCCAAATAATTCTCAGAGAAAAAA-AGTCACACCA-CCACATTTTTCTATTAGAAACTACAGAAGGCTGAGAACTCCACTATTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            53981 172 +    102524 -ATTTTTTCATTTGTTTTCCTGCAGCTGGTTTATCTCTTCCATCATGTCCAATTCAGGCATCTATAATGATTGCTCATTTATTCAA--------AGCACACTAACCAAATAAT----AGAGTAAAAAAGAC-ACATCACCTCGATTTTTCCATTAGAAGCTACATAGCACT-AAAAACCCATTACTT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57945602 1621 -  94987271 I
e otoGar3.GL873550           126531 715 +  18854210 I
e colAng1.NW_012115566v1    2650939 985 -   3067355 M
e manLeu1.NW_012099233v1     197828 922 +    290775 I
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=338478.000000
s hg38.chr6_GL000254v2_alt   906078 45 +   4827813 AATATGTGTATGCAGGTCTAAAGcccataataagcaaaaatatat-
s panTro5.chr6             29868845 45 + 175400573 AATATGTGTATGCAGGTCTAAAGcccataataagcaaaaatatat-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30103204 45 + 173848474 AATATGTGTATGCAGGTCTAAAGcccataataagcaaaaatatat-
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74614109 45 + 122973662 AATATGTGTATGCAGGTCTAAAGcccataataagcaaaaatatat-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30097604 45 + 172585720 AATATGTGTATGCAGATCTAAAGTCCATattaagcacaaatatat-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29761324 45 - 170955103 AATATGTGTATGCAGATCTAAAGcccatattaagcacaaatatat-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808823 45 -   2996164 AATATGTGTATGCAGATCTAAAGcccatattaagcacaaatatat-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     559927 45 +    766320 AATATGTGTATGCAGATCTAAAGcccatattaagcacaaatatat-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29016073 45 -  71996105 AATATGTGTATGCAGATCTAAAGcccatattaagcacaaatatat-
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      15494 45 +    132061 ATTGTGTGTATGCAAGACCAAAGcccataataagcacaatcatat-
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           241973 45 -    242197 AATGTGTGTCTGCAAGACCAAAGcccataataagcacaatcatat-
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     235162 43 -   1771730 AATGTGTG--TGCAAGACCAAAGcccataataagcacaatcatat-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     317202 45 -    457564 AATGTGTGTATGCAAGACCAAAGcccataaaaagcacaatcatat-
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     611974 44 +    730504 GTTATGGGCACGCAGATCT-AAGcccatacgcagaacaattgtac-
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57947223 45 -  94987271 AACATGTACATACAAACCTGAAAcccacaacatgcacaattatat-
i mm10.chr17               I 1621 C 0
s canFam3.chr35            26242988 45 +  26524999 GATACATGTGTACAgggctaacatccgaaataagcacaaccctgt-
i canFam3.chr35            C 0 I 136
s dasNov3.JH582591            54153 44 +    102524 AATCTGCAGGTGCAGGCCTGAAGCCTATTACAA--ACAGTCATATT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e otoGar3.GL873550           126531 715 +  18854210 I
e colAng1.NW_012115566v1    2650939 985 -   3067355 M
e manLeu1.NW_012099233v1     197828 922 +    290775 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=790664.000000
s hg38.chr6_GL000254v2_alt   906123 102 +   4827813 tttcacgtt----------------------------------------------------aaatgtatggctatttacactagatgaggt---aaagaaagattataaatagcttcacatctcgttttgtcacagaatgaatgcaagtcaggccag
s panTro5.chr6             29868890 102 + 175400573 tttcacgtt----------------------------------------------------aaatgtatggctatttacactagatgaggt---aaagaaagactataaatagcttcacatctcgttttgtcacagaatgaatgcaagtcaggccag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30103249 102 + 173848474 tttcacgtt----------------------------------------------------aaatgtatggctatttacactagatgaggt---aaagaaagactataaatagcttcacatctcgttttgtcacagaatgaatgcaagtcaggccag
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74614154 102 + 122973662 tttcacgtt----------------------------------------------------aaatgtatggctatttacactagatgaggt---aaagaaagactataaatagcttcacatctcgttctgtcacagaatgaatgcaagtcaggccag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30097649 102 + 172585720 tttcacgtt----------------------------------------------------aaatgtatggctatttacgctaggtgaggt---atagaaagactataaatagcttcacatctcgttttgtcacagaatgaatgcaagtcaggccag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29761369 102 - 170955103 tttcacgtt----------------------------------------------------aaatgtctggctatttacgctaggtgaggt---aaagaaagactataaatagcttcacatctcgttttgtcacagaatgaatgcaagtcaggccag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808868 102 -   2996164 tttcacgtt----------------------------------------------------aaatgtatggctatttacgctaggtgaggt---aaagaaagactataaatagcttcacatctcgttttgtcacagaatgaatgcaagtcaggccag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     559972 102 +    766320 tttcacgtt----------------------------------------------------aaatgtatggctatttacactaggtgaggt---aaagaaagactataaatagcttcacatctcgttttgtcacagaatgaatgcaagtcaggccag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29016118 102 -  71996105 tttcacgtt----------------------------------------------------aaatgtatggctatttacacgaggtgaggt---aaagaaagactataaatagcttcacatctcgttttgtcacagaatgaatgcaagtcaggccag
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      15539 100 +    132061 tttcacatt----------------------------------------------------aaat-tctggctatttaaactaggtgaagt---aaagaaaggctatacatagcttcatatctcatt-tgtcacaaaatgaatgcaagtcaggccag
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           242018 100 -    242197 tttcacatt----------------------------------------------------aaat-tctggctatttacattaggtgaagt---aaagaaaggctatacatagcttcgtatctcatt-tgccataaaatgaatgcaagtcaggccag
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     235205 100 -   1771730 tttcacatt----------------------------------------------------aaat-cctggctatttacactaggcgaagt---aaagaaaggctatacatagcttcatatctcatt-tgccacaaaatgaatgcaattcaggccag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     317247 100 -    457564 tttcacatt----------------------------------------------------aaat-tctggctatttacactagctgaagt---aaagaaaggctatacatctcttcatatctcatt-tgccacaaaatgaatgcaagtcaggccag
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     612018 102 +    730504 ttctgcatt----------------------------------------------------acatgtgtgactatttacattaggtggggt---aaataaagatttcaaatagcttcaggtctggttttgccacaaaacaaatgcaagtcaGGCCAG
i proCoq1.NW_012152574v1   C 0 I 55
s mm10.chr17               57947268  93 -  94987271 ttctgtgtt----------------------------------------------------aaatgtaagac---tcactttgggtggaat---aaatag------caaagagcttcatacccaattttgccacagaataaatgcgactcttgctag
i mm10.chr17               C 0 C 0
s canFam3.chr35            26243169 132 +  26524999 tctcatgtccctgagatcgagacctgagctgctcaatcaacttagccacccaggcaccccaaagcacgtgattattaacattaggtgcagt---aaataaagaccataaatagcttcacatctgatcatcccacc----------------------
i canFam3.chr35            I 136 C 0
s dasNov3.JH582591            54197 102 +    102524 TCTCTAGTA----------------------------------------------------AAATGTTTAACTATTTGCATTAGGTGGGTTTAAAAAAAAAGACCACCAATAGCGGCTTGTGTGGATTTGCCACAATTT---TGcaagtcagggcag
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e otoGar3.GL873550           126531 715 +  18854210 I
e colAng1.NW_012115566v1    2650939 985 -   3067355 M
e manLeu1.NW_012099233v1     197828 922 +    290775 I
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=445076.000000
s hg38.chr6_GL000254v2_alt   906225 57 +   4827813 gctttgccgccaaatgagtt----acaaaa-ttttggttttcagagtat--tgtgaattttgga
s panTro5.chr6             29868992 57 + 175400573 gctttgccgccaaatgagtt----acaaaa-ttttggttttcagagtat--tgtgaattttgga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30103351 57 + 173848474 gctttgccgccaaatgagtt----acaaaa-ttttggttttcagagtat--tgtgaattttgga
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74614256 57 + 122973662 gttttgccaccaaatgagtt----acaaaa-ttttggttttcagagtat--tgtgaattttgga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30097751 57 + 172585720 gctttgccaccaaatgactt----acaaaa-ttttggttttcagagtat--tgtgaattttgga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29761471 57 - 170955103 gctttgccaccaaatgactt----acaaaa-ttttggttttcagagtat--tgtgaattttgga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2808970 57 -   2996164 gctttgccaccaaatgactt----acaaaa-tttgggttttcagagtat--tgtgaattttgga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     560074 58 +    766320 gctttgccaccaaatgactt---aacaaaa-ttttggttttcagagtat--tgtgaattttgga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29016220 57 -  71996105 gctttgccaccaaatgactt----acaaaa-ttttggttttcagagtat--tgtgaattttgga
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      15639 60 +    132061 gttttcccacaaaatgaattacaaacaaaa-ttt-ggttttcagagtat--tgtggactttgga
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           242118 61 -    242197 gttttgccacaaaatgaattacaaacaaaa-tttaggttttcagggtat--tgtggactttgaa
i saiBol1.JH378357         C 0 C 0
s cebCap1.NW_016107755v1     235305 61 -   1771730 gttttgccacaaaatgaattacaaacaaaa-ttttggttttcagagtat--tgtggactttgga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     317347 61 -    457564 gttttgccacaaaatgaattacaaacaaaa-ttttggttttcagagtat--tgtggactttgga
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57947361 61 -  94987271 attttgccaccaaattagtgagatacaaaa-ctttggttttgaaattat--tggcaagtttgga
i mm10.chr17               C 0 C 0
s canFam3.chr35            26243301 49 +  26524999 ------------aatgaggtagaaacaaca-tttttatttctggagcag--tgtgggttttgga
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            54299 64 +    102524 gttttgccaccaaatgagttagaaacaaaacttttgatttccagagcgctgtgtggattttgga
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e proCoq1.NW_012152574v1     612120 55 +    730504 I
e otoGar3.GL873550           126531 715 +  18854210 I
e colAng1.NW_012115566v1    2650939 985 -   3067355 M
e manLeu1.NW_012099233v1     197828 922 +    290775 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=176781.000000
s hg38.chr6_GL000254v2_alt   906282 18 +   4827813 attgcagaaaaggatatg
s panTro5.chr6             29869049 18 + 175400573 attgcagaaaaggatatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30103408 18 + 173848474 attgcagaaaaggatatg
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74614313 18 + 122973662 attgcagaaaaggatatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30097808 18 + 172585720 attgcagaaaaggatatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29761528 18 - 170955103 attgcagaaaaggatatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2809027 18 -   2996164 attgcagaaaaggatatg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     560132 18 +    766320 attgcagaaaaggatatg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29016277 18 -  71996105 attgcagaaaaggatatg
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      15699 18 +    132061 attgcagaaagagatatg
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378357           242179 18 -    242197 attgcagaaagggatATG
i saiBol1.JH378357         C 0 N 0
s cebCap1.NW_016107755v1     235366 18 -   1771730 attacagaaagggatata
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     317408 18 -    457564 attgcagaaagggatatg
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     612175 18 +    730504 ATTGCAGAAAAGGATGTG
i proCoq1.NW_012152574v1   I 55 C 0
s mm10.chr17               57947422 18 -  94987271 attgcagaaaatgacgtg
i mm10.chr17               C 0 C 0
s canFam3.chr35            26243350 10 +  26524999 --------aAAGGGTGTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            54363 18 +    102524 atcgcagagaggggactg
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e otoGar3.GL873550           126531 715 +  18854210 I
e colAng1.NW_012115566v1    2650939 985 -   3067355 M
e manLeu1.NW_012099233v1     197828 922 +    290775 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=80059.000000
s hg38.chr6_GL000254v2_alt   906300 11 +   4827813 tgaaact--gTTT
s panTro5.chr6             29869067 11 + 175400573 tgaaact--gTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30103426 11 + 173848474 tgaaact--gTTT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74614331 11 + 122973662 tgaaact--gTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30097826 11 + 172585720 tgaaact--gTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29761546 11 - 170955103 tgaaact--gTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2809045 11 -   2996164 tgaaact--gTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     560150 11 +    766320 tgaaact--gTTT
i cerAty1.NW_012002711v1   C 0 I 316
s chlSab2.chr17            29016295 11 -  71996105 tgaaact--gTTT
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      15717 13 +    132061 tgaaactAAGTTT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     235384 13 -   1771730 tgaaactAAGTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     317426 13 -    457564 tgaaactAAGTTT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     612193 13 +    730504 CGGAACTAAGTTT
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57947440 13 -  94987271 tgaaactAAGCTT
i mm10.chr17               C 0 I 6
s canFam3.chr35            26243360 11 +  26524999 TGGAACT--GAGT
i canFam3.chr35            C 0 I 2
s dasNov3.JH582591            54381 13 +    102524 tgggactgAGCTT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e otoGar3.GL873550           126531 715 +  18854210 I
e colAng1.NW_012115566v1    2650939 985 -   3067355 M
e manLeu1.NW_012099233v1     197828 922 +    290775 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=1055219.000000
s hg38.chr6_GL000254v2_alt   906311 102 +   4827813 ATAAACATG-AGAAGATGTTTACAGATAGATGTTTTAGAAGTCAAATGAACAAATCTGAAGCAACAGACTAGAAATTCTATTCATGGAAATATGATAAAAATG
s panTro5.chr6             29869078 102 + 175400573 GTAAACATG-AGAAGATGTTTACAGATAGATGTTTTAGAAGTCAAATGAACAAATCTGAAGCAACAGACTAGAAATTCTATTCATGGAAATATGATAAAAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30103437 102 + 173848474 GTAAACATG-AGAAGATGTTTACAGATAGATGTTTTAGAAGTCAAATGAACAAATCTGAAGCAACAGACTAGAAATTCTATTCATGGAAATATGATAAAAATG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74614342 102 + 122973662 ATAAACATG-AGAAGATGTTTACAGATAGATGTTTTAGGAGTCAAATGAACAAGTCAGAGGCAACAGACTAGAAATTCTGTTCATGGAAATATGATAAAAATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30097837 102 + 172585720 ATAAACATG-AGAAGATATTTACAGATAAATGTTTTAGGAGTCAAATGAACAAATCTGAGGCAACAGACTAGAAATTCTATTCATGGAAATATGGTAAAAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29761557 102 - 170955103 ATAAACATG-AGAAGATATTTACAGATAAATGTTTTAGGAGTCAAATGAACAAATCTGAGGCAACAGACTAGAAATTCTATTCATGGAAATATGGTAAAAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2809056 102 -   2996164 ATAAACATG-AGAAGATATTTACAGATAAATGTTTTAGGAGTCAAATGAACAAATCTGAGGCAACAGACTAGAAATTCTATTCATGGAAATATGGTAAAAATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     560477 102 +    766320 ataaaCATG-AGAAGATATTTACAGATAAATGTTTTAGGAGTCAAATGAACAAATCTGAGGCAACAGACTAGAAATTCTATTCATGGAAATATGGTAAAAATG
i cerAty1.NW_012002711v1   I 316 C 0
s chlSab2.chr17            29016306 102 -  71996105 ATAAACATG-AGAAGATATTTACAGATAAATGTTTTAGGAGTCAAATGAACAAATCTGAGGCAACAGACTAGAAATTCTATTCATGGAAATATGGTAAAAATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     198750 102 +    290775 ataaaCATG-AGAAGATATTTACAGATAAATGTTTTAGGAGTCAAATGAACAAATCTGAGGCAACAGACTAGAAATTCTATTCATGGAAATATGGTAAAAATG
i manLeu1.NW_012099233v1   I 922 C 0
s calJac3.chrUn_GL286223      15730 102 +    132061 ATAAACATG-AGGAGATGTTTACAGATATATGTTTTAGGAGTCAAATGAACAAATCTGAGGCAACAGATTAGAAGTTCAATTCACGGAAATAAGGTAAAAAGG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     235397 102 -   1771730 ATAAACATG-AGGAGATGTTTACAGATATATGTTTTAGAAGTCAAATGAACAAATCTGAGGCAACAGACTAGAAATTCAATTCAGGGAAATAAGGTAAAAAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     317439  99 -    457564 ATAAACATG-AGGAGATGCTTACAGATATATGTTTTAGGAGTCAAATGAACAAATCTGAGGCAACAGATTAGAAACTCAATTCACGGAAATAAGGTAAAA---
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     612206 102 +    730504 GTAAACATA-AGAAGATGTTTACAAATAAATGTGTTAGGAGTCAAATGAACCAATCCGAGGTAACAGATTAGAAATTTTATTCATGAAAATACTATAAAAATA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           127246  87 +  18854210 aTAAACAAATATAAGGTGTTTACGAATAGATGTTTTAGGAATCAAATAAACAAATCTGAGGCAACAGATTAGAAATTTTGTTTGTGg----------------
i otoGar3.GL873550         I 715 C 0
s mm10.chr17               57947459 102 -  94987271 ATATATATG-AGAAGTTATTTGCAAGTGGATATTTTAGGAGTCAAATCAAGAAAGCTGAGGCAAGAGACTAAAAATTCTATTCATGGAAACACCATGAAACTT
i mm10.chr17               I 6 C 0
s canFam3.chr35            26243373 102 +  26524999 ACAAATACG-AAAATTTATTTATGAATGGATGTTTTAGGAGCCAAGTGAACAAATCTGAGACAACACACTAGAGATTCTATTCATGGAAATACTATAAAAACA
i canFam3.chr35            I 2 C 0
s dasNov3.JH582591            54394 100 +    102524 ATAGCCACG-GTAAG-TGCTTCCAGATAGATGCGCTGGCTGTCGAGTGAACAAGTCTGAGGCCACCG-CTAGAAGTTCCAGTCGTGGGAACATCTTAGAAACA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e colAng1.NW_012115566v1    2650939 985 -   3067355 M
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=27013.000000
s hg38.chr6_GL000254v2_alt   906413 3 +   4827813 CCA
s panTro5.chr6             29869180 3 + 175400573 CCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30103539 3 + 173848474 CCA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74614444 3 + 122973662 CCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30097939 3 + 172585720 CCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29761659 3 - 170955103 CCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2809158 3 -   2996164 CCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     560579 3 +    766320 CCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29016408 3 -  71996105 CCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     198852 3 +    290775 CCA
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      15832 3 +    132061 CCA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     235499 3 -   1771730 CCA
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012152574v1     612308 3 +    730504 CCA
i proCoq1.NW_012152574v1   C 0 I 152
s canFam3.chr35            26243475 3 +  26524999 CTA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            54494 3 +    102524 CCG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57947561 0 -  94987271 C
e otoGar3.GL873550           127333 0 +  18854210 C
e aotNan1.NW_018509740v1     317538 0 -    457564 C
e colAng1.NW_012115566v1    2650939 985 -   3067355 M
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=1820.000000
s hg38.chr6_GL000254v2_alt   906416 1 +   4827813 -G
s panTro5.chr6             29869183 1 + 175400573 -G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30103542 1 + 173848474 -G
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74614447 1 + 122973662 -G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30097942 1 + 172585720 -G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29761662 1 - 170955103 -G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2809161 1 -   2996164 -G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     560582 1 +    766320 -G
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29016411 1 -  71996105 -G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     198855 1 +    290775 -G
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      15835 1 +    132061 -G
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     235502 1 -   1771730 -G
i cebCap1.NW_016107755v1   C 0 C 0
s canFam3.chr35            26243478 1 +  26524999 -G
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            54497 1 +    102524 T-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57947561 0 -  94987271 C
e proCoq1.NW_012152574v1     612311 152 +    730504 I
e otoGar3.GL873550           127333 0 +  18854210 C
e aotNan1.NW_018509740v1     317538 0 -    457564 C
e colAng1.NW_012115566v1    2650939 985 -   3067355 M
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=757561.000000
s hg38.chr6_GL000254v2_alt   906417 124 +   4827813 ----------------------TAAG-----AGggctgggcgtgg------------------tggctcacacct----------ataatcctagcact------------ttgggaggccgaggcgg--gtgggtcgcttgaact--ggagtccgagaccagcctgggcaacatggcgaaaccccatctctacc
s panTro5.chr6             29869184 124 + 175400573 ----------------------TAAG-----AGggctgggcgtgg------------------tggctcacacct----------ataatcctagcact------------ttgggaggccgaggcgg--gtgggtcgcttgaact--ggagtccgagaccagcctgggcaacatggcgaaaccccatctctacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30103543 124 + 173848474 ----------------------TAAG-----AGggctggacgtgg------------------tggctcacacct----------ataatcctagcact------------ttgggaggccgaggcag--gtgggtcgcttgaact--ggagtccgagaccagcctgggcaacatggcgaaaccccatctctacc
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74614448 124 + 122973662 ----------------------TAAG-----AGggctgggcgtgg------------------tggctcacgcct----------ataatcctagcact------------ttgggaggctgaggcgg--gtagatcccttgaact--ggagtccgagaccagcctgggcaacatggcgaaaccccatctctacc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30097943 124 + 172585720 ----------------------GAAA-----AGggctgggcgcgg------------------tggctcacgcct----------ataatcctagcact------------ttgggaggctgaggcgg--gtggatcgcttgaact--ggagtccgagaccagtctgggcaacatggcaaaaccccgtctctacc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29761663 124 - 170955103 ----------------------GAAA-----AGggctgggcgcgg------------------tggctcacgcct----------ataatcctagcact------------ttgggaggctgaggcgg--gtggatcgcttgaact--ggagtccgagaccagtctgggcaacatggcaaaaccccgtctctacc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2809162 124 -   2996164 ----------------------GAAA-----AGggctgggcgtgg------------------tggctcacgcct----------ataatcctagcact------------ttgggaggctgaggtgg--gtggatcgcttgaact--ggagtccgagaccagtctgggcaacatggcaaaaccccgtctctacc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     560583 124 +    766320 ----------------------GAAA-----AGggctgggcgcgg------------------tggctcatgcct----------ataattctagcact------------ttgggaggctgaggcgg--gtggatcgcttgaact--ggagtccgagaccagtttgggcaacatggcaaaaccccatctctacc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29016412 124 -  71996105 ----------------------GAAA-----AGggctgggcgtgg------------------tggctcacgcct----------ataatcctagcact------------ttgggaggctgaggcgg--gtggatcgcttgaact--ggagtccgagaccagtctgggcaacatggcaaaaccccgtctctacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     198856 124 +    290775 ----------------------GAAA-----AGggctgggcgcgg------------------tggctcacgcct----------ataattctagcact------------ttgggaggctgaggcgg--gtggatcgcttgaact--ggagtccgagaccagtttgggcaacatggcaaaaccccatctctacc
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      15836 117 +    132061 ----------------------TAAG-----AGggctgggcgcaa------------------tggctcatgcct----------ataatcttagtact------------ttgggaggttgaggtgg--gtggattgcttgagctcagaagtttgagaccagcctgggcaacatggcaaaaccca---------
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     235503 117 -   1771730 ----------------------TAAG-----AGGATTgggcacgg------------------tggctcacacct----------ataatcctagtact------------ttgggaggttgaggcgg--gtgaattgcttgagctcagaagtttgaaaccagcctgggcaacatggcaaaaccca---------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     317538 113 -    457564 -------------------------------AGggccgggcgtgg------------------tggctcaccccc----------ataatcctagtact------------ttgggaggttgaggcgg--gtggattgcttgagctcagaagtttgagaccagcctgggcaacacggcaaaaccca---------
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           127333 118 +  18854210 ----------------------------------gcccagcacag------------------tggctcatacct----------gtaataccagtac-------------ttaggaagctgaggcagatatagattgcctcaactcacaagttcaagagcagcctgagcaaga--gcaagactccatctcttaa
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            54498 183 +    102524 GGGGACCCTGTCGAGGCCCCTGGAAACACACAGGTCGGCATGTGACCCCTTTAGCAGGTCAGCTAGCCCAGACCTGCTCCAGAGAACATGCCTGCCACTGAGATCCAGCAGAGGGGGGGCCCTGGCCC--GCAGCAAGCTTGGCCT--TTAGCC---GACCAG-CTAAGCAA----GCGcacccccacccccacc
i dasNov3.JH582591         C 0 I 182
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57947561   0 -  94987271 C
e proCoq1.NW_012152574v1     612311 152 +    730504 I
e canFam3.chr35            26243479   0 +  26524999 C
e colAng1.NW_012115566v1    2650939 985 -   3067355 M
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=553975.000000
s hg38.chr6_GL000254v2_alt   906541 102 +   4827813 aaaa------------------------------------------------ataca-----------------aaaccccgtctctaccaaa-------------aatacaaaaaatcagttgggcatggtggcaggtgcctgtaatcccagctacgggggaggctgaggaaggagaat
s panTro5.chr6             29869308 102 + 175400573 aaaa------------------------------------------------ataca-----------------aaaccccgtctctaccaaa-------------aatacaaaaaatcagttgggcatggtggcaggtgcctgtaatcccagctacgggggaggctgaggaaggagaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30103667 102 + 173848474 aaaa------------------------------------------------ataca-----------------aaaccccgtctctaccaaa-------------aatacaaaaaatcagttgggcatggtggcaggtgcctgtaatcccagctacgggggaggctgaggaaggagaat
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74614572 102 + 122973662 aaaa------------------------------------------------ataca-----------------aaaccccatctctaccaaa-------------aatacaaaaagttagttgggcgtggcgccaggtgcctgtaatcccagctacgggggaggctaaggaaggagaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30098067 102 + 172585720 aaaa------------------------------------------------atgca-----------------aaacgctgtctctaccaaa-------------aatacaaaagattagttgggtatggtagcaggtgcctgtaatcccagctacaggggaggctgaggaaggagaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29761787 102 - 170955103 aaaa------------------------------------------------atgca-----------------aaacgctgtctctaccaaa-------------aatacaaaagattagttgggtatggtagcaggtgcctgtaatcccagctacaggggaggctgaggaaggagaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2809286  99 -   2996164 aaaa------------------------------------------------atgca-----------------aaacgctgtctctaccaaa-------------aatacaaaagattagttgggtgtggtagcaggtgcctgtaatcccagctacaggggaggctgagga---agaat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     560707 100 +    766320 aaaa------------------------------------------------atgca-----------------aaatgctgtctctaccaaa-------------aatacaaaagattagtt--gtgtggtagcaggtgcctgtaatcccagctacaggggaggccaaggaaggagaat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29016536 102 -  71996105 aaaa------------------------------------------------atgca-----------------aaacgctgtctctaccaaa-------------aatacaaaagattagttgggtgtggtagtaggtgcctgtaatcccagctacaggggagactgaggaaggagaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     198980 102 +    290775 aaaa------------------------------------------------atgca-----------------aaatgctgtctctaccaaa-------------aatacaaaagattagttgggtgtggtagcaggtgcctgtaatcccagctacaggggaggccgaggaaggagaat
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      15953  86 +    132061 ---------------------------------------------------------------------------------gtttctaccaaa-------------aatataaaaaattaaccaggcctggtggcagccacctgtaatcccagctacagaggaggctgagacaggaaaat
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     235620  86 -   1771730 ---------------------------------------------------------------------------------gtttctaccaaa-------------aatacaaaaaattagccaggcgtggtggcaggcacctgtaatcccagctacagaggagactgaggcaggaaaat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     317651  86 -    457564 ---------------------------------------------------------------------------------gtttctgccaaa-------------aatacaaaaaattagccaggcatggtgacaggcacccgtaatcccagctacagatggggctgaggcaggaaaat
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           127451 179 +  18854210 aaaATAATAGCCAgggcagcacctgtggctcagtgggcagggcaccggccccatatactgagggtggcgggttcaaacccggccctggccaaactgcaacaacaacaacaaaaaaaat-agccagacattgtggtgggtgcctgtagtcccagctacttgggaggctgaggcaaggaaat
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57947561   0 -  94987271 C
e dasNov3.JH582591            54681 182 +    102524 I
e proCoq1.NW_012152574v1     612311 152 +    730504 I
e canFam3.chr35            26243479   0 +  26524999 C
e colAng1.NW_012115566v1    2650939 985 -   3067355 M
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=661185.000000
s hg38.chr6_GL000254v2_alt   906643 82 +   4827813 tgcttgaacctggaaggcagaggttgcagtgagctgagatcacaccactgcgttccagcctgggcgacagagcaa-----gactcca
s panTro5.chr6             29869410 82 + 175400573 tgcttgaacctgggaggcagaggttgcagtgagctgagatcacaccactgcgttccagcctgggcgacagagcaa-----gactcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30103769 82 + 173848474 tgcttgaacctgggaggcagaggttgcagtgagctgagatcacaccactgcgttccagcctgggcgacagagcaa-----gactcca
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74614674 82 + 122973662 tgcttgaacctgggaggcagaggttgcagcgagccgagattacaccactgcattccagcctgggcgacagagcaa-----gactcca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30098169 82 + 172585720 tgcttgaacctgggaggcagaggttgcagtgagccgagatcccaccactgcattccagcctgggtgacagagcaa-----gactccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29761889 82 - 170955103 tgcttgaacctgggaggcagaggttgcagtgagccgagatcccaccactgcattccagcctgggtgacagagcaa-----gactccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2809385 82 -   2996164 tgcttgaacctgggaggcagaggttgcagtgagccaagatcccaccactgcattccagcctgggtgacagagcaa-----gactccc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     560807 82 +    766320 tgcttgaacctgggaggcagaggttgcagtgagctgagatcccaccactgcattccagcctgggtgacagagcaa-----gactcca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29016638 82 -  71996105 tgcttgaacctgggaggcagaggttgcagtgagccgagatcccaccactgcattccagcctgggtgacagagcaa-----gactcca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     199082 82 +    290775 tgcttgaacctgggaggcagaggttgcagtgagctgagatcccaccactgcattccagcctgggtgacagagcaa-----gactcca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2651924 82 -   3067355 Tgcttaaacctgggaggcagaggttgcagtgagccaagatcccaccactgcattccagcctgggtgacagagcaa-----gactcca
i colAng1.NW_012115566v1   M 985 C 0
s calJac3.chrUn_GL286223      16039 82 +    132061 tgcttgaacctgggaggcggaggttgcagtgagttgagatcaaaccactgcattccagcatgggccacagagcaa-----gacttca
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     235706 82 -   1771730 tgcttgaacctgggaggcgaaggttgcagtgagtttagatcacaccactgcattccagcatgggccgcagagcaa-----gattccg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     317737 82 -    457564 tgcttgaacctgggaggcggaggttgcagtgagtcgagatcacaccactgcattccagcatgggccgcagagcaa-----gactcca
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           127630 86 +  18854210 cacctaagcccagggtttagagagtgctgtgagctgtg-tgatgccatggcactctaccttgggcaataaagtgaattctgtctcca
i otoGar3.GL873550         C 0 I 145
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57947561  0 -  94987271 C
e dasNov3.JH582591            54681 182 +    102524 I
e proCoq1.NW_012152574v1     612311 152 +    730504 I
e canFam3.chr35            26243479  0 +  26524999 C
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=40110.000000
s hg38.chr6_GL000254v2_alt   906725 4 +   4827813 tctc
s panTro5.chr6             29869492 4 + 175400573 tctc
i panTro5.chr6             C 0 I 20
s panPan2.chr6             30103851 4 + 173848474 tctc
i panPan2.chr6             C 0 I 222
s nomLeu3.chr1a            74614756 4 + 122973662 tctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30098251 4 + 172585720 tctc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29761971 4 - 170955103 tctc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2809467 4 -   2996164 tctc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     560889 4 +    766320 tctc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29016720 4 -  71996105 tctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     199164 4 +    290775 tctc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2652006 4 -   3067355 tctc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      16121 4 +    132061 tctc
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     235788 4 -   1771730 tctc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     317819 4 -    457564 tctc
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           127861 4 +  18854210 tctc
i otoGar3.GL873550         I 145 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57947561 0 -  94987271 C
e dasNov3.JH582591            54681 182 +    102524 I
e proCoq1.NW_012152574v1     612311 152 +    730504 I
e canFam3.chr35            26243479 0 +  26524999 C
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=187674.000000
s hg38.chr6_GL000254v2_alt   906729 38 +   4827813 aaaataaaata-----------aaata----------------------------aaataaaataaaTTTT------------------AAAATG
s panTro5.chr6             29869516 38 + 175400573 aaaataaaata-----------aaata----------------------------aaataaaataaaTTTT------------------AAAATG
i panTro5.chr6             I 20 C 0
s panPan2.chr6             30104077 38 + 173848474 aaaataaaata-----------aaata----------------------------aaataaaataaaTTTT------------------AAAATG
i panPan2.chr6             I 222 C 0
s nomLeu3.chr1a            74614760 38 + 122973662 aaaataaaata-----------aaata----------------------------aaataaaataaaTTTT------------------AAAATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30098255 33 + 172585720 -----aaaata-----------aaata----------------------------aactaaaataaTTTTT------------------TAAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29761975 33 - 170955103 -----aaaata-----------aaata----------------------------aaCTAAAATAATTTTT------------------TAAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2809471 33 -   2996164 -----aaaata-----------aaata----------------------------aactaaaataaTTTTT------------------TAAATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     560893 33 +    766320 -----aaaata-----------aaata----------------------------aaCTAAAATAATTTTT------------------AAAATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29016724 33 -  71996105 -----aaaata-----------aaata----------------------------aactaaaataaCTTTT------------------AAAATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     199168 33 +    290775 -----aaaata-----------aaata----------------------------aactaaaataaTTTTT------------------AAAATG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2652010 33 -   3067355 -----aaaata-----------aaata----------------------------aaataaaaTAATTTTT------------------TAAATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      16125 44 +    132061 -----aaaataaataaataaataaatg----------------------------aaatgaaataaatTTT------------------AAAATG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     235792 47 -   1771730 -----aaaataaataaataaacaaataaat-------------------------aaataaataaaATTTT------------------AAAATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     317823 72 -    457564 -----aaaataaataaataaataaataaataaataaataaataaataaataaataaaATGAGATAAATTTT------------------AAAATG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           127865 55 +  18854210 -aaaaaaaaaa-----------aaaga----------------------------aaagaAAAGAATTTTTATTCATGGAAATATTATAAAAACA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e mm10.chr17               57947561  0 -  94987271 C
e dasNov3.JH582591            54681 182 +    102524 I
e proCoq1.NW_012152574v1     612311 152 +    730504 I
e canFam3.chr35            26243479  0 +  26524999 C
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=52635.000000
s hg38.chr6_GL000254v2_alt   906767 5 +   4827813 CCAGT
s panTro5.chr6             29869554 5 + 175400573 CCAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30104115 5 + 173848474 CCAGT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74614798 5 + 122973662 CCAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30098288 5 + 172585720 CCAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29762008 5 - 170955103 CCAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2809504 5 -   2996164 CCAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     560926 5 +    766320 CCAGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29016757 5 -  71996105 CCAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     199201 5 +    290775 CCAGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2652043 5 -   3067355 CCAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      16169 5 +    132061 CCAGT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     235839 5 -   1771730 CCAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     317895 5 -    457564 CCAGT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           127920 5 +  18854210 CCACT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57947561 5 -  94987271 CCAGC
i mm10.chr17               C 0 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e dasNov3.JH582591            54681 182 +    102524 I
e proCoq1.NW_012152574v1     612311 152 +    730504 I
e canFam3.chr35            26243479 0 +  26524999 C
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=258679.000000
s hg38.chr6_GL000254v2_alt   906772 32 +   4827813 AAGGATC-TCCATAAAGGCTATGTATGAAAACC-
s panTro5.chr6             29869559 32 + 175400573 AAGGATC-TCCATAAAGGCTATATATGAAAACC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30104120 32 + 173848474 AAGGATC-TCCATAAAGGCTATATATGAAAACC-
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74614803 32 + 122973662 AAGGATC-TCCATAAAGACCATGTATGAAAACC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30098293 32 + 172585720 AAGGATC-CCCATAAAGGCCACGGATGAAAACC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29762013 32 - 170955103 AAGGATC-CCCATAAAGGCCACGGATGAAAACC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2809509 32 -   2996164 AACGATC-CCCATAAAGGCCACGGATGAAAACC-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     560931 32 +    766320 AAGGATC-CCCACAAAGGCCACGGATAAAAACC-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29016762 32 -  71996105 AAGGATC-CCCATAAAGGCCACGGATGAAAACC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     199206 32 +    290775 AAGGATC-CCCACAAAGGCCACGGATAAAAACC-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2652048 32 -   3067355 AAGGATC-CCCATAAAGGCCACAGATGAAAACC-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      16174 32 +    132061 AAGGATC-CCCATAAAGCCCATATATGAAAACC-
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     235844 32 -   1771730 AAGGATC-CCCATAAAGCCAATATATGAAAACC-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     317900 32 -    457564 GAGGATC-CACATAAAGCTCATGTATGAAAACC-
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           127925 34 +  18854210 GAGACTCTCCCATAAAGGCCCTGTGTGGAAACCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57947566 31 -  94987271 AAGGATC--CCACACAGGTCTTGCCTGTGAATC-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26243479 30 +  26524999 GAGGATC-CTCATAATGGCCCTATATGGAAA---
i canFam3.chr35            C 0 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e dasNov3.JH582591            54681 182 +    102524 I
e proCoq1.NW_012152574v1     612311 152 +    730504 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=998145.000000
s hg38.chr6_GL000254v2_alt   906804 118 +   4827813 TGACCATGT-C-ACATC---------CATGACCCTATTACAGC-AGGTCAGATTAATCTTAC---CCTAGTCCAGAGAACCACGGGAACCA---CT-GAG-TCCTAGTGGA-GGGAAAGCCTGGAACAGATGTGAAGCA
s panTro5.chr6             29869591 118 + 175400573 TGATCATGT-C-ACATC---------CATGACCCTATTACAGC-AGGTCAGATTAATCTTAC---CCGAGTCCAGAGAACCACAGGAACCA---CT-GAG-TCCTAGTGGA-GGGAAAGCCTGGAACAGATGTGAAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30104152 118 + 173848474 TGATCATGT-C-ACATC---------CATGACCCTATTACAGC-AGGTCAGATTAATCTTAC---CCGAGTCCAGAGAACCACAGGAACCA---CT-GAG-TCCTAGTGGA-GGGAAAGCCTGGAACAGATGTGAAGCA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74614835 118 + 122973662 TGATCACGT-C-AAATT---------CATGACCCTATTACAGC-GGGTCAGATTAATCTTAC---CCTAGTCCAGAGAACCACAGGAACCA---CT-GAG-TCCTAGTGGA-GGGAAAGCCTGGAACAGATGTGAAGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30098325 118 + 172585720 TGATCATGT-C-ACATC---------CATGACCCTATTACAGC-AGGTCAGATGAATCTTAC---CCTAGTCCAGAGAACCATAGGAACCA---CT-GAG-TCCCAGTGGA-GGGAAAGCCTGGAACAGATGTGAAGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29762045 118 - 170955103 TGATCATGT-C-ACATC---------CATGACCCTATTACAGC-AGGTCAGATGAATCTTAC---CCTAGTCCAGAGAACCATAGGAACCA---CT-GAG-TCCCAGTGGA-GGGAAAGCCTGGAACAGATGTGAAGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2809541 118 -   2996164 TGATCATGT-C-ACATC---------CATGACCCTATTACAGC-AGGTCAGATGAATCTTAC---CCTAGTCCAGAGAACCATAGGAACCA---CT-GAG-TCCCAGTGGA-GGGAAAGCCTGGAACAGATGTGAAGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     560963 118 +    766320 TGATCATGT-C-ACATC---------CATGACCCTATTACAGC-AGGTCAGATGAATCCTAC---CCTAGTCCAGAGAACCATAGGAACCA---CT-GAG-TCCCAGTGGA-GGGAAAGCCTGGAACAGATGTGAAGCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29016794 118 -  71996105 TGATCATGT-C-ACATC---------CATGACCCTATTACAGC-AGGTCAGATGAATCTTAC---CCTAGTCCAGAGAACCATAGGAACTA---CT-GAG-TCCCAGTGGA-GGGAAAGCCTGGAACAGATGTGAAGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     199238 118 +    290775 TGATCATGT-C-ACATC---------CATGACCCTATTACAGC-AGGTCAGATGAATCCTAC---CCTAGTCCAGAGAACCATAGGAACCA---CT-GAG-TCCCAGTGGA-GGGAAAGCCTGGAACAGATGTGAAGCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2652080 118 -   3067355 TGATCATGT-C-ACATC---------CATGACCCTATTACAGC-AGGTCAGATGAATCTTAC---CCTAGTCCAGAGAACCATAGGAACCA---CT-GAG-TCCCAGTGGA-GGGAAAGCCTGGAACAGATGTGAAGCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      16206 117 +    132061 TGACCACGT-C-ACAT----------CATGACCCTATTACAGC-GGGTCAGATGAGTCTTGC---CCTAGTCCAGAGAACCATAGGAACCA---CT-GAA-TGCTGGTGGA-AGGAAACCCTGGAACAGATGTGAAGCA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     235876 117 -   1771730 TGACCATGT-C-ACAT----------CATGACCCTATTACAGC-GGGTCAGTTGAGTCTTGC---CCTAGTCCAGAGAACCAAAGAAACCA---CT-GAA-TGCTGGCAGA-AGGAAAGCCTGGAACAGACGTGAAGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     317932 117 -    457564 TGACCATGT-C-ACAT----------CATGACCCTATTACAGC-GGGTCAGATGAGTCTTGC---CCTAGTCCAGAGAACCATAGGAACCA---CT-GAA-TGCTGGCGGA-AGGAAAGCCTGGAACAGATGTGAAGCA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           127959 119 +  18854210 TGGCCACATCC-ACATC---------CATGACCC--TTACAGTGGGGTCAGAGAAGTCTTTC---CCTGGTCCAGAGAAGCATATGAACTA---TTCGAG-TCCCAACAGA-GGGAAGACCTGGAAGAGATGAGAAATT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57947597 113 -  94987271 TAACTACGT-CTGCACC---------AATGAGCCTATCACAGC-AAAGCAGACA-----------CCAGACCCAGAGAACCACATAAGCCA---TT-GGGATCCCAGCAGAGGGGAAAGCCAGGAACAGGTGTGCTACT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26243509  75 +  26524999 TGA-------C-A-------------------------------GGGCAAGATGGGCCCCGC---CCTA-TCCAGGGGCCCAGATGGAGGA---CTCGAA-TCTGAGCAGAAAGGAAAGCCT-----------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            54863 108 +    102524 tcaccttgt-t-gcatcagcttgcctcacaagcctgtcacttc-agctc---tctgtcttgctcgtcttctttagaaggcaccaggaaccaaacct-ggg-acctcttgtg-tggta----------------------
i dasNov3.JH582591         I 182 C 0
e micMur3.chr6               139409 1141 + 123392446 I
e proCoq1.NW_012152574v1     612311 152 +    730504 I
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=38294.000000
s hg38.chr6_GL000254v2_alt   906922 6 +   4827813 AGCTTG
s panTro5.chr6             29869709 6 + 175400573 AGCTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30104270 6 + 173848474 AGCTTG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74614953 6 + 122973662 GGCTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30098443 6 + 172585720 AGCTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29762163 6 - 170955103 AGCTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2809659 6 -   2996164 AGCTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     561081 6 +    766320 AGCTTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29016912 6 -  71996105 AGCTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     199356 6 +    290775 AGCTTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2652198 6 -   3067355 AGCTTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      16323 6 +    132061 ATGTTG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     235993 6 -   1771730 ATCTTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     318049 6 -    457564 ATCTTG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               140550 6 + 123392446 AGCTTT
i micMur3.chr6             I 1141 C 0
s otoGar3.GL873550           128078 6 +  18854210 AGCTCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57947710 6 -  94987271 AGCTCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26243584 2 +  26524999 --CT--
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            54971 3 +    102524 ggc---
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     612311 152 +    730504 I
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=2588388.000000
s hg38.chr6_GL000254v2_alt   906928 204 +   4827813 GCTTTTAGCAATTGAGAGTAAACAAACACCTGCTGAGTTTACTC-TTC----CTTGCCTGTCTTTCTAAGCCATCACTCTGAAGACCTAAAAAGCA-GACATGACTCATACACACCTTCAGATGCTTTCAGTATTTGTTACACCTAGATCTGTGCAGAAACTGAATACCTTATTGGTGCataatttacaaagaattct----------------------------------------------------------------------------------cacatt-----agctct--
s panTro5.chr6             29869715 204 + 175400573 GCTTTTAGCAATTGAGAGTAAACAAACACCTGCTGAGTTTACTC-TTC----CTTGCCTGTCTTTCTAAGCCATCACTCTGAAGACCTAAAAGGCA-GACATGACTCATACACACCTTCAGATGCTTTCAGTATTTGTTACACTTAGATCTGTGCAGAAACTGAATACCTTATTGGTGCataatttacaaagaattct----------------------------------------------------------------------------------cacatt-----agctct--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30104276 204 + 173848474 GCTTTTAGCAATTGAGAGTAAACAAACACCTGCTGAGTTTACTC-TTC----CTTGCCTGTCTTTCTAAGCCATCACTCTGAAGACCTAAAAGGCA-GACATGACTCATACACACCTTCAGATGCTTTCAGTATTTGTTACACTTAGATCTGTGCAGAAACTGAATACCTTATTGGTGCataatttacaaagaattct----------------------------------------------------------------------------------cacatt-----agctct--
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74614959 204 + 122973662 GCTTTTAGCAATTGAGAGTAAACAAACACCTGCTGAGTTTACTC-TTC----CTTGCCTGTCTTTCTAAGCCATCACTCTGAAGACCTAAAAAGCA-GACATGACTCATACACACCTTCAGATGCTTTCAGTATTTGTTACACTTAGATCTGCACAGAAACTGAATACCTTATTGGTGCATAATTTACAAAGAATTCT----------------------------------------------------------------------------------CACATT-----AGCTCT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30098449 204 + 172585720 ACTTTTAGCAATTGAGAGTAAACAAACACCTGCTGAGTTTACTC-TTC----CTTGCCTGTCTTTCTAAGCCATCACTCTGAAGACCTAAAAAGCA-GACATGACTCATACACACCTTCAGATGCTTTCAGTATTTGTTACACTTAGATATGCACAGAAACTGAATACCTTACTGGTGCataatttacaaagaattct----------------------------------------------------------------------------------cacatt-----agctct--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29762169 204 - 170955103 ACTTTTAGCAATTGAGAGTAAACAAACACCTGCTGAGTTTACTC-TTC----CTTGCCTGTCTTTCTAAGCCATCACTCTGAAGACCTAAAAAGCA-GACATGACTCATACACACCTTCAGATGCTTTCAGTATTTGTTACACTTAGATCTGCACAGAAACTGAATACCTTACTGGTGCataatttacaaagaattct----------------------------------------------------------------------------------cacatt-----agctct--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2809665 204 -   2996164 ACTTTTAGCAATTGAGAGTAAACAAACACCTGCTGAGTTTACTC-TTC----CTTGCCTGTCTTTCTAAGCCATCACTCTGAAGACCTAAAAAGCA-GACATGACTCATACACACCTTCAGATGCTTTCAGTATTTGTTACACTTAGATCTGCACAGAAACTGAATACCTTACTGGTGCataatttacaaagaattct----------------------------------------------------------------------------------cacatt-----agctct--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     561087 204 +    766320 ACTTTTAGCAATTGAGAGTAAACAAACACCTGCTGAGTTTACTC-TTC----CTTGCCTGTCTTTCTAAGCCATCACTCTGAAGACCTAAAAAGCA-GACATGACTCATACACACCTTCAGATGCTTTCAGTATTTGTTACACTTAGATCTGCACAGAAACTGAATACCTTACTGGTGCataatttacaaagaattct----------------------------------------------------------------------------------cacatt-----agctct--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29016918 204 -  71996105 ACTTTTAGCAATTGAGAGTAAACAAACACCTGCTGAGTTTACTC-TTC----CTTGCCTGTCTTTCTAAGCCATCACTCTGAGGACCTAAAAAGCA-GACATGACTCATACACACCTTCAGATGCTTTcagtatttgttacacttagatctgcacagaaactgaataccttactggtgcataatttacaaagaattct----------------------------------------------------------------------------------cacatt-----agctct--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     199362 204 +    290775 ACTTTTAGCAATTGAGAGTAAACAAACACCTGCTGAGTTTACTC-TTC----CTTGCCTGTCTTTCTAAGCCATCACTCTGAAGACCTAAAAAGCA-GACATGACTCATACACACCTTCAGATGCTTTCAGTATTTGTTACACTTAGATCTGCACAGAAACTGAATACCTTACTGGTGCataatttacaaagaattct----------------------------------------------------------------------------------cacatt-----agctct--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2652204 204 -   3067355 ACTTTTAGCAATTGAGAGTAAACAAACACCTGCTGAGTTTACTC-TTC----CTTGCCTGTCTTTCTAAGCCATCACTCTGAAGACCTAAAAAGCA-GACATGACTCATACACACCTTCAGATGCTTTcagtatttgttacacttagatctgcacagaaactgaataccttactggtgcataatttacaaagaattct----------------------------------------------------------------------------------cacatt-----agctct--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      16329 203 +    132061 GTTTTTAGCAATTGAGAGTAAACAAACACCTGCTGAGTTTACTC-CTT----TTTTCCTGTCGTTTGAAGCCATCACTCTAAAGATCTAAAAAGCA-GACATGACTCAT-CACACCTTCAGATGCTTTCAGTATTTGTTACACCTAGATCTGCACAGAAACTGAATATTTTATTGGTGCATAATTTCCAAAGAATTCT----------------------------------------------------------------------------------CACATT-----AGCTCT--
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     235999 205 -   1771730 GTTTTTAGCAATTGAGAGTAAACAAACACCTGCTGGGTTTACTCTTTT----TTTTCCTGTCTTTTGAAGCCATCACTCTAAAGATCTAAAAAGCA-GACATGACTCATATACACCTTCAGATGCTTTcagtatttgttacacttagatctgcacagaaactgaatgttttattggtgcataatttccaaagaattct----------------------------------------------------------------------------------cacatt-----agctct--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     318055 204 -    457564 GTTTTCAGCAATTGAGAGTAAACAAACACCTGCTGAGTTTACTC-TTT----TCTTCCTGCCATTTGAAGCCATCACTCTAAAGATCTAAAAAGCA-GACATGCCTCATACACACCTTCAGATGCTTTCAGTATTTGTTACACTTAGATCTGCACAGAAACTGAATATTTCATTGCTGCATAATTTCCAAAGAATTCT----------------------------------------------------------------------------------CACATT-----AGCTCT--
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               140556 202 + 123392446 GCTTTTGACAATTGAAAACAAACAAACACCTGC--AGTTTACTC-TTC----CTTTCCCATCTTTCCAAGTCATCACTGTGAAGTTCTAAAAAGCA-AACATGACTCATACACACCTTCAGACGTTTTTGGTATTTGTTACATTTAGATCCTCACAGAAACAGAATACCTTATTGGTGCATAATTTGCAAAACATTCC----------------------------------------------------------------------------------Cacatt-----atctct--
i micMur3.chr6             C 0 I 2646
s proCoq1.NW_012152574v1     612463 202 +    730504 GCTTTTGACAATCGAGAGTAAACAAACACCTGC--AGTTTCCTC-TTC----CTTTCCTGTCTTTCCAAGTCATCACTCTGAAATTCTAAAAAGCC-AACATGACTCATACACACCCTCAGATGCTTTTGGTATTTGTTACATTTAGATCTGCACAGAAACAGAATACCATATTGGTGCATTATTTGCAAAAAACTCT----------------------------------------------------------------------------------CAcatt-----atctct--
i proCoq1.NW_012152574v1   I 152 C 0
s otoGar3.GL873550           128084 201 +  18854210 GTTTTTGACAATCAAGAGTAAACAAACACCTGCAGAGTTTAC----AC----CTTTTCTGCCTTTCCAAGTCATCACTCTGAAGTTCTAAAAAGCC-AGCATGACTCATACACACCTTCAGATGCTTTTGGCGTTTGTTACACTTAGATCTGCACAGACAGAGAATACcttactggtgtataatatgcaaaaaactct----------------------------------------------------------------------------------cacatt-----atctct--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57947716 286 -  94987271 -GCTTTAGCAATTGAGAGTAAACAAACACCTGTTGGGTTTACTC-TTCCCTGCCTGCCTGTCTTTCCAAACCATCACTCTG-------GAACAACA-G-TGTGACTCATACACACCTTCAGATGTTTTCAGTATTTGTTACACTTGAATCTGTGCAGAAACAGAATACCTTAATGGTGCATAGTTTACATTATGTTCTCTTCTAATTCATTCTTAGTCAtgtgttactggaaatagagcccagggccttgtacatgtaaccacagaccctggcaatgtgccacattccacaaccccT--
i mm10.chr17               C 0 I 1
s canFam3.chr35            26243586 187 +  26524999 GCTTTCAGCGATCTAGAGCAAA-GAACAGCTGCCGAGTTTTCAC-T------CTTCTCTGTCTTTCCAAG---TGTCTCTGATATTCTGAAAGTCA--ACATGATTCAT--ACACCCTCAGAAGCTTTCAGTATTTATTTCACTTAGATCAGCACAGAAACACATTTCCT------TGTCTAACTTACAAGCAATT------------------------------------------------------------------------------------CACTtt-----acctgc--
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            54974 187 +    102524 ---------------gggtgcccaactgcttg---agccacatc-cac----ttcccCACTCCTTCCAAGCCATCACTCTGAAACTCTAAAATCCATGACA--ATGCACACACATCTTCAAGGGGTTTCAATACTCAGTACACCTACATGAGCCCAGAAACATAACACCTTACCGGTGTACAATCTACAAAACACTCT----------------------------------------------------------------------------------CACACT-----CTCTCATC
i dasNov3.JH582591         C 0 C 0
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=250310.000000
s hg38.chr6_GL000254v2_alt   907132 30 +   4827813 tctaattctttctgttgtttctatatgata
s panTro5.chr6             29869919 30 + 175400573 tctaattctttctgttgtttctatatgata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30104480 30 + 173848474 tctaattctttctgttgtttctatatgata
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74615163 30 + 122973662 CCTAATTCTTTCTGTTGTTTCTATATGAta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30098653 30 + 172585720 cctaattctttcagttgtttctataagata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29762373 30 - 170955103 cctaattctttcagttgtttctataagata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2809869 30 -   2996164 cctaattctttcagttgtttctataagata
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     561291 30 +    766320 cctaattctttcagttgtttctataagata
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29017122 30 -  71996105 cctaattatttcggttgtttctatgagata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     199566 30 +    290775 cctaattctttcagttgtttctataagata
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2652408 30 -   3067355 cctaattctttcggttgtttctataagata
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      16532 30 +    132061 CCTAATTCGTTTGGTTGTTTCCATATGGta
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     236204 30 -   1771730 cctaattcttttggttgtttgtacatggta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     318259 30 -    457564 CCTAATTCTTTTGGTTGTTTCTATATGGta
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     612665 30 +    730504 cctaattctttcaatcatatctgtatggca
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           128285 19 +  18854210 cctaatcttttcaattata-----------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57948003 30 -  94987271 TCTGTCCTATCCTTTTGTTTCTTTATGATA
i mm10.chr17               I 1 C 0
s canFam3.chr35            26243773 28 +  26524999 cttaatcctcccaaccatgtctcc--gctg
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            55161 30 +    102524 TCTCAATCAttttttttcttttaaatgtta
i dasNov3.JH582591         C 0 I 6419
e micMur3.chr6               140758 2646 + 123392446 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=742696.000000
s hg38.chr6_GL000254v2_alt   907162 77 +   4827813 atatc----tccatttgtcagataggaaaactgaagctcagaaag-tttgaatgaacttcataagatcacacagcc----aataaa
s panTro5.chr6             29869949 77 + 175400573 atatc----tccatttgtcgggtaggaaaactgaagctcagaaag-tttgaatgaacttcataagatcacacagcc----aataaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30104510 77 + 173848474 atatc----tccatttgtcaggtaggaaaactgaagctcagaaag-tttgaatgaacttcataagatcacacagcc----aataaa
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74615193 77 + 122973662 atatg----tccatttctcagataggaaaactgaagctcagaaag-tttgaatgaacttcataagatcacacagcc----aataaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30098683 77 + 172585720 atatc----tccatttgtcagataggaaaaccgaagctcagaaag-tttgaatgaacttcgtaagatcacacagcc----aataaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29762403 77 - 170955103 atatc----tccatttgtcagataggaaaaccgaagctcagaaag-tttgaatgaacttcgtaagatcacacagcc----aataaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2809899 77 -   2996164 atatc----tccatttgtcagataggaaaaccgaagctcagaaag-tttgaatgaactttgtaagatcacacagcc----aataaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     561321 77 +    766320 atatc----tccatttgtcagataggaaaaccgaagctcagaaag-tttgaatgaacttcgtaagatcacacagcc----aataaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29017152 77 -  71996105 atatc----tccatttgtcagataggaaaaccgaagctcagaaag-tttgaatgaacttcgtaagatcacacagcc----aataaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     199596 77 +    290775 atatc----tccatttgtcagataggaaaaccgaagctcagaaag-tttgaatgaacttcgtaagatcacacagcc----aataaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2652438 77 -   3067355 atatc----tccatttgtcagataggaaaaccgaagctcagaaag-tttgaatgaacttcgtaagatcacacagcc----aataaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      16562 77 +    132061 atatc----tccatttgtcagatgagaaaactgaagctgggaaag-tctaaatgaccttcataagattacacagcc----aataaa
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     236234 77 -   1771730 atatc----tccatttgtcatatgagaaaactgaagctcagaaag-tttaaatgaccttcctaagattacacagcc----aataaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     318289 77 -    457564 atatc----tccatttgtcagatgagaaaactgaagctcagaaag-tttaaatgaccttcataagattacacagcc----aataaa
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     612695 77 +    730504 atatc----tctatttgtcaggtgagaaaactgaagctcagaaag-tttatatgacctgcctgaggttgcacaacc----aataaa
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           128304 73 +  18854210 -----------tatttatcaaatgag-aaactgaacctcagaaag-tttaaacaacctgcctgaggttgcacagccagtaaataaa
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57948033 75 -  94987271 ACTTC----TCCACATGTGAGA---GAAAACTGAAGTTCAAAAAATTTTAAATAgggcttgtgggatagcttagca----ggtaaa
i mm10.chr17               C 0 I 241
s canFam3.chr35            26243801 64 +  26524999 ctatcatggtccattt-tcagatgagaaagctgcagctcag-atg-ctggaccaacctgcccaaact-------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e dasNov3.JH582591            55191 6419 +    102524 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=721867.000000
s hg38.chr6_GL000254v2_alt   907239 75 +   4827813 taccagagcttggcctcaaagtcaagtctcaggtccttctgcccttcactaacagtgctccagccatggtcgtct
s panTro5.chr6             29870026 75 + 175400573 taccagagcttggcctcaaagtcaagtctcaggtccttctgcccttcactaacagtgctccagccatggtcgtct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30104587 75 + 173848474 taccagagcttggcctcaaagtcaagtctcaggtccttctgcccttcactaacagtgctccagccatggtcgtct
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74615270 75 + 122973662 taccagagcttggcctcaaagtcaagtctcaggtccttctgcccttcactcacagtgctccagccatggtcatct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30098760 75 + 172585720 taccacaggttggcctcaaagtcaagtctcaggtccttctccccctcactcacagtgctccagccatggtagtct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29762480 75 - 170955103 taccacaggttggcctcaaagtcgagtctcaggtccttctccccctcactcacagtgctccagccatggtagtct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2809976 75 -   2996164 taccacaggttggcctcaaagtcaagtctcaggtccttctccccctcactcacagtgctccagccatggtagtct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     561398 75 +    766320 taccacaggttggcctcaaagtcaagtctcaggtccttctccccctcactcacagtgctccagccatggtagtct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29017229 75 -  71996105 taccacaggttggcctcaaagtcaagtctcaggtccttctccccctcactcacagtgctccagccatggtagtct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     199673 75 +    290775 taccacaggttggccttaaagtcaagtctcaggtccttctccccctcactcacagtgctccagccatggtagtct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2652515 75 -   3067355 taccacaggctggcctcaaagtcaagtctcaggtccttctccccctcactcacagtgctccagccatggtagtct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      16639 75 +    132061 tatcagagcttggtctcaaagtcaagtctcaggttcttcgccccctcactcacggtgctccagccatggtagtct
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     236311 75 -   1771730 tgccagagcttagtctgaaagtcaagtctcaggtccttcgccccctcactcacagtgctCCAGCCATGGTAGTCT
i cebCap1.NW_016107755v1   C 0 I 2463
s aotNan1.NW_018509740v1     318366 75 -    457564 taccagagcttggtctcaaagtcaagtctcaggtccttcgccccctcactcacagtgctccagccatggtagtct
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     612772 75 +    730504 tgccagagctgggtctcaaacccaggcctcaggtccttatccctctcatttacaatactccagccctgctgtcct
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           128377 75 +  18854210 tgccagagttgggtctcaaatccaggtctcaggtccttatccctcccatttacaatgctccagccatactgtcct
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26243865 67 +  26524999 tacctg--------ctccagccccgatgtctggtcctcctccctcttgctcatggtgctcccaccacactggcct
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=570846.000000
s hg38.chr6_GL000254v2_alt   907314 68 +   4827813 gactgctgttctttaaacttcctta---actttcaactcagaaaccaaacacacccagctccctctgcctg
s panTro5.chr6             29870101 68 + 175400573 gactgctgttctttaaacttcctta---actttcaactcagaaaccaaacacacccagctccctctgcctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30104662 68 + 173848474 gactgctgttctttaaacttcctta---actttcaactcagaaaccaaacacacccagctccctctgcctg
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74615345 68 + 122973662 gattgctgttctttaaaattcctta---actttcaactcagaaaccaaacacactcagctccttctgcctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30098835 68 + 172585720 aattgctgttcttttaacttcctta---actttcaactcagaaaccaaacacacccagctccctctgcctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29762555 68 - 170955103 aattgctgttcttttaacttcctta---actttcaactcagaaaccaaacacacccagctccctctgcctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2810051 68 -   2996164 aattgctgttcttttaacttcctta---actttcaactcagaaaccaaacacacccagctccctctgcctg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     561473 68 +    766320 aattgctgttcttttaacttcctta---actttcaacacagaaaccaaacacacccagctccctctgcgtg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29017304 68 -  71996105 aattgctgttcttttaaattcctta---actttcaactcagaaaccaaacacacccagctccctctgcctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     199748 68 +    290775 aattgctgttcttttaacttcctta---actttcaacacagaaaccaaacacacccagctccctctgcgtg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2652590 68 -   3067355 aattgctgttcttttaacttcctta---actttcaactcagaaaccaaacacacccagctccctctgcctg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      16714 67 +    132061 gattgctgttctttaaacttccttg---actttcaactcagaaactaaacacac-cagctctctctgcctg
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     318441 67 -    457564 gattgctgttctttaaacttccttg---actttcaactcagaaactaaacacac-cagctctctttgcctg
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     612847 71 +    730504 gactgcagtttttcaaacgtcctcaaatactttgaattcggagaccaagcacacccagctccctctgcctg
i proCoq1.NW_012152574v1   C 0 I 14494
s otoGar3.GL873550           128452 71 +  18854210 gactgcagattttttaacttcctcaaatactttcaacttagagaccaagcatacccagctccctctgcctg
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26243932 54 +  26524999 gattg-tgttcttggaactcacccagatactttcagctcagggagtaa----------------cagcctg
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e cebCap1.NW_016107755v1     236386 2463 -   1771730 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=694385.000000
s hg38.chr6_GL000254v2_alt   907382  99 +   4827813 ggcgtggtgctctgttcagcctcctcaccccacacc-----catgttgctaacagcttaaatggcacctcctcagtaaagcctcccctgaattccccagactta
s panTro5.chr6             29870169  99 + 175400573 ggcatggtgctctgttcagcctcctcaccccacacc-----catgttgctaacagcttaaatggcacctcctcagtaaagcctcccctgaattccccagactta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30104730  99 + 173848474 ggcatggtgctctgttcagcctcctcaccccacacc-----catgttgctaacagcttaaatggcacctcctcagtaaagcctcccctgaattccccagactta
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74615413 104 + 122973662 ggcgtggtgccctcttcagcctcctcaccccacaccattttcatgttactaacagcttaaatggcgcctcctcagtaaagcctcccctgaattccccagactta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30098903 104 + 172585720 ggcgtggtgcccttttcaacctcctcaccccacaccattttcatgctactaacagttttaacggcgcctcctcagtaaagcctcccctgaattccccagactta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29762623 104 - 170955103 ggcgtggtgccctcttcaacctcctcaccccacaccattttcatgctactaacagttttaacggcgcctcctcagtaaagcctcccctgaattccccagactta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2810119 104 -   2996164 ggcgtggtgccctcttcaacctcctcaccccacaccattttcatgctactaacagtttaaatggcgcctcctcagtaaagcctcccctgaattccccagactta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     561541 104 +    766320 ggcgtggtgccctcttcaacctcctcaccccacaccattttcatgctactaacagtttaaacggcacctcctcagtaaagcctcccctgaattccccagactta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29017372 104 -  71996105 ggcgtggtgccctcttcaacctcctcaccccacaccattttcatgttactaacaacttaaacggcgcctcctcagtaaagcctcccctgaattccccagactta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     199816 104 +    290775 ggcgtggtgccctcttcagcctcctcaccccacaccattttcatgctactaacagtttaaacggcacctcctcagtaaagcctcccctgaattccccagactta
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2652658 104 -   3067355 ggcgtggtgctgtcttcaacctcctcaccctataccattttcatgttactaacagcttaaatggcgcctcctcagtaaaacctcccctgaattccccagactta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      16781 101 +    132061 gat---gtgccctcttcagcctcctcaccccacaccattttcacgttactaacagcttaaatggtacctcctcagtaaagcctcccctgaattccccagactta
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     318508 101 -    457564 gat---gtgccctcttcaacctcctcaccccacaccatttttacgttactaacagcttaaatggcacctcctcagtaaagcctcccctgaattccccagactta
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           128523  55 +  18854210 ----atatgccctcctcagctacccgAAGCCCTGCCAT--------------------------------CTCAGCGAA-------------CCCCCAGACATA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26243986  99 +  26524999 ---gacatgtgctcttcagcctgcccatcctagggcaccatcacctcagtaactgctcaagt--cacctccccaaggaagccttcccagaatttctcacactta
i canFam3.chr35            C 0 I 31
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e cebCap1.NW_016107755v1     236386 2463 -   1771730 I
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=146385.000000
s hg38.chr6_GL000254v2_alt   907481 21 +   4827813 gaacact-------gtttccccaatccc
s panTro5.chr6             29870268 21 + 175400573 gaaccct-------gtttccccaatccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30104829 21 + 173848474 gaaccct-------gtttccccaatccc
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74615517 21 + 122973662 gaaccct-------gtttccccaatccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30099007 21 + 172585720 gaaccct-------gtttccccaatccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29762727 21 - 170955103 gaaccct-------gtttccccaatccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2810223 21 -   2996164 gaaccct-------gtttccccaatccc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     561645 21 +    766320 gaaccct-------gtttccccaatccc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29017476 21 -  71996105 gaaccct-------atttccccaatccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     199920 21 +    290775 gaaccct-------gtttccccaatccc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2652762 21 -   3067355 gaaccct-------gtttccccaatccc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      16882 21 +    132061 gaaccct-------tttcccctgatccc
i calJac3.chrUn_GL286223   C 0 I 9510
s aotNan1.NW_018509740v1     318609 21 -    457564 gaacact-------gttcccccaatccc
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           128578 28 +  18854210 AACCCCTCCCCCGCATCCCCACCATCCC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244085 31 +  26524999 I
e cebCap1.NW_016107755v1     236386 2463 -   1771730 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=234645.000000
s hg38.chr6_GL000254v2_alt   907502 41 +   4827813 actagccactctcatatatggcatactgtagtcattgtttt
s panTro5.chr6             29870289 41 + 175400573 actagccactctcatatatggcatactgtagtcattgtttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30104850 41 + 173848474 actagccactctcatatatggcatactgtagtcattgtttt
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74615538 41 + 122973662 actagccactctcatatatggcatactgtagtcattgtttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30099028 41 + 172585720 actagccactGTCATATATGGCATATGGTAGTCATTGTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29762748 41 - 170955103 actagccactctCATATATGGCATATGGTAGTCATTGTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2810244 41 -   2996164 actagccactctCATATATGGCATATGGTAGTCATTGTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     561666 41 +    766320 actagccactctcatatatggcatatggtagtcattgtttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29017497 41 -  71996105 actagccactctcatatatggcatatggtagtcattgtttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     199941 41 +    290775 actagccactctcatatatggcatatggtagtcattgtttt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2652783 41 -   3067355 actaaccactctcatatatggcatatggtagtcattgtttt
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     318630 41 -    457564 actatccactcccatatatggagtaccatagtcattgtttt
i aotNan1.NW_018509740v1   C 0 I 1205
s otoGar3.GL873550           128606 26 +  18854210 ACTAGTTACTCTCACA----GCACACCGTA-----------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244085 31 +  26524999 I
e cebCap1.NW_016107755v1     236386 2463 -   1771730 I
e calJac3.chrUn_GL286223      16903 9510 +    132061 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=5500.000000
s hg38.chr6_GL000254v2_alt   907543 1 +   4827813 g
s panTro5.chr6             29870330 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30104891 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74615579 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30099069 1 + 172585720 G
i rheMac8.chr4             C 0 I 1383
s macFas5.chr4             29762789 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2810285 1 -   2996164 g
i macNem1.NW_012011356v1   C 0 I 689
s cerAty1.NW_012002711v1     561707 1 +    766320 g
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29017538 1 -  71996105 g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     199982 1 +    290775 g
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2652824 1 -   3067355 g
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244085 31 +  26524999 I
e otoGar3.GL873550           128632 0 +  18854210 C
e aotNan1.NW_018509740v1     318671 1205 -    457564 I
e cebCap1.NW_016107755v1     236386 2463 -   1771730 I
e calJac3.chrUn_GL286223      16903 9510 +    132061 I
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=48271.000000
s hg38.chr6_GL000254v2_alt   907544 30 +   4827813 tttgtttgtttTTTagaaagaaagagagag
s panTro5.chr6             29870331 28 + 175400573 tttgtttgtttTTTAGAa--aaagagagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30104892 30 + 173848474 tttgtttgtttTTTagaaaaagagagagag
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74615580 28 + 122973662 tttgtttgtttTTTGGAA--AGACAGAGag
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002711v1     561708 22 +    766320 tttgtttgtttTTTagaaagag--------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29017539 30 -  71996105 tttgtttgtttTTTagaaagagagagagaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     199983 30 +    290775 tttgtttgtttTTTagaaagagagaaagag
i manLeu1.NW_012099233v1   C 0 I 859
s colAng1.NW_012115566v1    2652825 30 -   3067355 tttgtttgtttTTTagaaagagagagagag
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           128632 11 +  18854210 -----TTTTCATTCAA--------------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244085 31 +  26524999 I
e aotNan1.NW_018509740v1     318671 1205 -    457564 I
e cebCap1.NW_016107755v1     236386 2463 -   1771730 I
e calJac3.chrUn_GL286223      16903 9510 +    132061 I
e macNem1.NW_012011356v1    2810286 689 -   2996164 I
e macFas5.chr4             29762790  0 - 170955103 C
e rheMac8.chr4             30099070 1383 + 172585720 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=17685.000000
s hg38.chr6_GL000254v2_alt   907574 8 +   4827813 agaaagaa
s panTro5.chr6             29870359 8 + 175400573 agaaagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30104922 8 + 173848474 agaaagaa
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74615608 8 + 122973662 agaaagaa
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29762790 6 - 170955103 --AAAGaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     561730 8 +    766320 agaaagaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29017569 8 -  71996105 agaaagaa
i chlSab2.chr17            C 0 I 19
s colAng1.NW_012115566v1    2652855 6 -   3067355 --aaagaa
i colAng1.NW_012115566v1   C 0 I 2
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244085 31 +  26524999 I
e otoGar3.GL873550           128643 0 +  18854210 C
e aotNan1.NW_018509740v1     318671 1205 -    457564 I
e cebCap1.NW_016107755v1     236386 2463 -   1771730 I
e calJac3.chrUn_GL286223      16903 9510 +    132061 I
e manLeu1.NW_012099233v1     200013 859 +    290775 I
e macNem1.NW_012011356v1    2810286 689 -   2996164 I
e rheMac8.chr4             30099070 1383 + 172585720 I
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=-1558.000000
s hg38.chr6_GL000254v2_alt   907582 14 +   4827813 aagaagaaacg-aaa
s panTro5.chr6             29870367  5 + 175400573 aag----------aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30104930  5 + 173848474 aag----------aa
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74615616 15 + 122973662 aagaaaagaagaaaa
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2652863 14 -   3067355 aagaagaaaagaaa-
i colAng1.NW_012115566v1   I 2 M 2310
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244085 31 +  26524999 I
e otoGar3.GL873550           128643  0 +  18854210 C
e aotNan1.NW_018509740v1     318671 1205 -    457564 I
e cebCap1.NW_016107755v1     236386 2463 -   1771730 I
e calJac3.chrUn_GL286223      16903 9510 +    132061 I
e manLeu1.NW_012099233v1     200013 859 +    290775 I
e chlSab2.chr17            29017577 19 -  71996105 I
e cerAty1.NW_012002711v1     561738  0 +    766320 C
e macNem1.NW_012011356v1    2810286 689 -   2996164 I
e macFas5.chr4             29762796  0 - 170955103 C
e rheMac8.chr4             30099070 1383 + 172585720 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=9492.000000
s hg38.chr6_GL000254v2_alt   907596 42 +   4827813 gaaaagaaaaaaag--aaaagaaaagaaaaTCAAAATCCATGTg
s panTro5.chr6             29870372 42 + 175400573 gaaaagaaaaaaag--aaaagaaaagaaaaTCAAAATCCATGTg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30104935 42 + 173848474 gaaaagaaaaaaag--aaaagaaaagaaaaTCAAAATCCATGTg
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74615631 35 + 122973662 gaaaaggaggaaagaaaaaagaaaagaaaagaaaa---------
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29762796 24 - 170955103 -acaagaagaaaag--aaaagaggcca-----------------
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     561738 24 +    766320 -agaagaagaaaag--aaaagaggcca-----------------
i cerAty1.NW_012002711v1   C 0 C 0
s otoGar3.GL873550           128643 12 +  18854210 --------------------------------AACACTCAgccg
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244085 31 +  26524999 I
e aotNan1.NW_018509740v1     318671 1205 -    457564 I
e cebCap1.NW_016107755v1     236386 2463 -   1771730 I
e calJac3.chrUn_GL286223      16903 9510 +    132061 I
e colAng1.NW_012115566v1    2652877 2310 -   3067355 M
e manLeu1.NW_012099233v1     200013 859 +    290775 I
e chlSab2.chr17            29017577 19 -  71996105 I
e macNem1.NW_012011356v1    2810286 689 -   2996164 I
e rheMac8.chr4             30099070 1383 + 172585720 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=279668.000000
s hg38.chr6_GL000254v2_alt   907638 151 +   4827813 ggtgtggtggctcatg--------cctgtaatcccagcactttgggaggccgaggcaggcagatagctgaggtcaggagttccagaccagcctgaccaatatggtgaaaccccgtctctactaaaaataca-----------------------------------------------------aa-----aattagctgggggtggtggtgcatgc
s panTro5.chr6             29870414 151 + 175400573 ggtgtggtggctcatg--------cctgtaatcccagcactttgggaggccgaggcaggcagatagctgaggtcaggagttccagaccagcctgaccaatatggtgaaaccccgcctctactaaaaataca-----------------------------------------------------aa-----aattagctgggggtggtggtgcatgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30104977 193 + 173848474 ggtgtggtggctcatg--------cctgtaatcccagcactttgggaggccgaggcaggcagatagctgaggtcaggagttccagaccagcctgaccaatatggtgaaaccccgcctct-----------aNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA-----AATTAGCTGGGGGTGGTGGTGCATGC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74615666 151 + 122973662 ggcatagtggctcatg--------cctgtaatcccagcactttgggaggccgaggcaggcagatagctgaggtcaggagttccagaccagcctgaccaacatggtgaaacctcctctctactaaaaataca-----------------------------------------------------aa-----aattcgccaggggtggtggtgcatgc
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29762820 159 - 170955103 ggtgtggtggctcacgcccctccacccgtgatcccagcactttgggaggccgaggcagggagatagctgaagtctggagttccagagcagcctgaccaacatggtgaaagcccatctctactaaaaataca-----------------------------------------------------ca-----aattagccaggcatggtggtgcatgc
i macFas5.chr4             C 0 I 1110
s cerAty1.NW_012002711v1     561762 159 +    766320 ggtgtggtggctcacgcccctccacccgtgatcccagcactttgggaggccgaggcagggagatagctgaagtctggagttccagaccagcctgaccaacatggtgaaagcccatctctactaaaaataca-----------------------------------------------------ca-----aattagccgggcatggtggtgcatgc
i cerAty1.NW_012002711v1   C 0 I 368
s chlSab2.chr17            29017596 159 -  71996105 ggcgtggtggctcgcgcccctccgcccgtaatcccagcactttgggaggccgaggcaggcagatagctgaagtctggagttccagaccagcctgaccaacatggtgaaaccccatctctactaaaaataca-----------------------------------------------------ca-----aattagccgggcatggtggtgcatgc
i chlSab2.chr17            I 19 I 330
s otoGar3.GL873550           128655 154 +  18854210 ggcacagtggttcatg--------cctataattccagcactttgggaagctgaggcagggagattcttgaggccaggtgtttgagactagtctaaaaaatgtaggaagactctgtctctaCAaaataaata-----------------------------------------------------aataagtaaataactaaGg--ggcagtgcctgt
i otoGar3.GL873550         C 0 I 26
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244085  31 +  26524999 I
e aotNan1.NW_018509740v1     318671 1205 -    457564 I
e cebCap1.NW_016107755v1     236386 2463 -   1771730 I
e calJac3.chrUn_GL286223      16903 9510 +    132061 I
e colAng1.NW_012115566v1    2652877 2310 -   3067355 M
e manLeu1.NW_012099233v1     200013 859 +    290775 I
e macNem1.NW_012011356v1    2810286 689 -   2996164 I
e rheMac8.chr4             30099070 1383 + 172585720 I
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=546.000000
s hg38.chr6_GL000254v2_alt   907789 1 +   4827813 T
s panTro5.chr6             29870565 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30105170 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74615817 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244085 31 +  26524999 I
e otoGar3.GL873550           128809 26 +  18854210 I
e aotNan1.NW_018509740v1     318671 1205 -    457564 I
e cebCap1.NW_016107755v1     236386 2463 -   1771730 I
e calJac3.chrUn_GL286223      16903 9510 +    132061 I
e colAng1.NW_012115566v1    2652877 2310 -   3067355 M
e manLeu1.NW_012099233v1     200013 859 +    290775 I
e chlSab2.chr17            29017755 330 -  71996105 I
e cerAty1.NW_012002711v1     561921 368 +    766320 I
e macNem1.NW_012011356v1    2810286 689 -   2996164 I
e macFas5.chr4             29762979 1110 - 170955103 I
e rheMac8.chr4             30099070 1383 + 172585720 I
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=21163.000000
s hg38.chr6_GL000254v2_alt   907790 40 +   4827813 AAAGggaag------------------ggaaggggaaggggaagggagagaggaagga
s panTro5.chr6             29870566 58 + 175400573 AAAgggaagggaaggggaaggggaagcggaaggggaaggggaagggAGAGaggaagga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30105171 57 + 173848474 AAAgggaagggaaggggaaggggaagcggaa-gggaaggggaagggagagaggaagga
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74615818 58 + 122973662 GAAGGGAGGGGAAGGggaagggagagaggaaggaagggaggaaggaaggaaggaagga
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29764089 32 - 170955103 --------------------------agaaagaaagaaagaaagaaagaaagaaagaa
i macFas5.chr4             I 1110 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244085 31 +  26524999 I
e otoGar3.GL873550           128809 26 +  18854210 I
e aotNan1.NW_018509740v1     318671 1205 -    457564 I
e cebCap1.NW_016107755v1     236386 2463 -   1771730 I
e calJac3.chrUn_GL286223      16903 9510 +    132061 I
e colAng1.NW_012115566v1    2652877 2310 -   3067355 M
e manLeu1.NW_012099233v1     200013 859 +    290775 I
e chlSab2.chr17            29017755 330 -  71996105 I
e cerAty1.NW_012002711v1     561921 368 +    766320 I
e macNem1.NW_012011356v1    2810286 689 -   2996164 I
e rheMac8.chr4             30099070 1383 + 172585720 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=21746.000000
s hg38.chr6_GL000254v2_alt   907830 36 +   4827813 agggagggaggaaggaaggaag--------------------------------------------gaaCTTATCTCCgt
s panTro5.chr6             29870624 80 + 175400573 agggagggaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaCGAACGAACTTATCTCCgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30105228 48 + 173848474 agggagggaggaaggaaggaag--------------------------------gaaggaaggaacgaaCTTATCTCCgt
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74615876 52 + 122973662 aggaaggaaggaaggaaggaag----------------------------gaaggaaggaaggaaggaaCTTATCTcagt
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29764121 47 - 170955103 agaaagaaagaaagaaagaaag---------------------------------aaagaaagaaggaaCTTATCTCAGT
i macFas5.chr4             C 0 C 0
s otoGar3.GL873550           128835 36 +  18854210 atgtatagaggatggtgggttc--------------------------------------------gaacctggccccag
i otoGar3.GL873550         I 26 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244085 31 +  26524999 I
e aotNan1.NW_018509740v1     318671 1205 -    457564 I
e cebCap1.NW_016107755v1     236386 2463 -   1771730 I
e calJac3.chrUn_GL286223      16903 9510 +    132061 I
e colAng1.NW_012115566v1    2652877 2310 -   3067355 M
e manLeu1.NW_012099233v1     200013 859 +    290775 I
e chlSab2.chr17            29017755 330 -  71996105 I
e cerAty1.NW_012002711v1     561921 368 +    766320 I
e macNem1.NW_012011356v1    2810286 689 -   2996164 I
e rheMac8.chr4             30099070 1383 + 172585720 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=26711.000000
s hg38.chr6_GL000254v2_alt   907866 40 +   4827813 ctgggtaacatgaggagaccctgtctctaccaaaaattaa
s panTro5.chr6             29870704 40 + 175400573 ctgggtaacatggggagaccctgtctctaccaaaaattaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30105276 40 + 173848474 ctgggtaacatggggagaccctgtctctaccaaaaattaa
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74615928 40 + 122973662 ctgggtaacatggggagactctgtctctaccaaaaattaa
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29764168 16 - 170955103 CTGGGTAACATGGGGA------------------------
i macFas5.chr4             C 0 C 0
s calJac3.chrUn_GL286223      26413 40 +    132061 ctggttaacaaggtgaaacctcgtctctactaaaaataca
i calJac3.chrUn_GL286223   I 9510 C 0
s otoGar3.GL873550           128871 18 +  18854210 -------------------ccaaactgcaacaaaaaa---
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244085 31 +  26524999 I
e aotNan1.NW_018509740v1     318671 1205 -    457564 I
e cebCap1.NW_016107755v1     236386 2463 -   1771730 I
e colAng1.NW_012115566v1    2652877 2310 -   3067355 M
e manLeu1.NW_012099233v1     200013 859 +    290775 I
e chlSab2.chr17            29017755 330 -  71996105 I
e cerAty1.NW_012002711v1     561921 368 +    766320 I
e macNem1.NW_012011356v1    2810286 689 -   2996164 I
e rheMac8.chr4             30099070 1383 + 172585720 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=1365.000000
s hg38.chr6_GL000254v2_alt   907906 1 +   4827813 a
s panTro5.chr6             29870744 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30105316 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74615968 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30100453 1 + 172585720 a
i rheMac8.chr4             I 1383 C 0
s calJac3.chrUn_GL286223      26453 1 +    132061 a
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244085 31 +  26524999 I
e otoGar3.GL873550           128889 0 +  18854210 C
e aotNan1.NW_018509740v1     318671 1205 -    457564 I
e cebCap1.NW_016107755v1     236386 2463 -   1771730 I
e colAng1.NW_012115566v1    2652877 2310 -   3067355 M
e manLeu1.NW_012099233v1     200013 859 +    290775 I
e chlSab2.chr17            29017755 330 -  71996105 I
e cerAty1.NW_012002711v1     561921 368 +    766320 I
e macNem1.NW_012011356v1    2810286 689 -   2996164 I
e macFas5.chr4             29764184 0 - 170955103 C
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=715545.000000
s hg38.chr6_GL000254v2_alt   907907 150 +   4827813 aatattagccgagtgtggtggcatgagcctgtagtcccagctacttgggaggctgaggcaggaggatcgatttagcctag-gaagtcaaggt--cagtaagctgcgatcatgccaatgcactccagcctgggtgacag-agagagactctgtct
s panTro5.chr6             29870745 150 + 175400573 aatattagccaagtgtggtggcatgagcctgtagtcccagctacttgggaggctgaggcaggaggatcgatttagcctag-gaagtcaaggt--cagtaagctgcgatcatgccaatgcactccagcctgggtgacag-agagagaccctgtct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30105317 150 + 173848474 aatattagccaagtgtggtggcatgagcctgtagtcccagctacttgggaggctgaggcaggaggatcgatttagcctag-gaagtcaaggt--cagtaagctgcgatcatgccaatgcactccagcctgggtgacag-agagagaccctgtct
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74615969 150 + 122973662 aatattagccgagtgtggtggcatgagcctgtagtcccagctacttgggaggctgaggcaggaggatcgctttagcctag-gaagtcaaggt--cagtaagctgcaatcatgccaatgcactccagcctgggtgacag-agagagaccctgtct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30100454 149 + 172585720 aatattagccgagtgtagtggcatgagcctatagtcccagctacttgggaggctgaggcaggaggatcacttcag-ctag-gaagtcaaggt--cagtaagctacagtcacgccagtgcactccagcctgggtgacag-agagagaccttgtct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29764184 148 - 170955103 -ATattagccgagtgtagtggcatgagcctatagtcccagctacttgggaggctgaggcaggaggatcacttcag-ctag-gaagtcaaggt--cagtaagctacggtcacgccagtgcactccagcctgggtgacag-agagagaccttgtct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2810975 149 -   2996164 aatattagccaagtgtagtggcatgagcctgtagtcccagctacttgggaggctgaggcaggaggatcacttcag-ctag-gaagtcaaggt--cagtaagctacggtcacgccagtgcactccagcctgggtgacag-agagagaccttgtct
i macNem1.NW_012011356v1   I 689 C 0
s cerAty1.NW_012002711v1     562289 149 +    766320 AATattagccgagtgtagtggcatgagcctgtagtcccagctacttgggaggctgaggcaggaggatcacttcag-ctag-gaagtcaaggt--cagtaagctacggtcacgccagtgcactccagcctgggtgacag-agagagaccttgtct
i cerAty1.NW_012002711v1   I 368 C 0
s chlSab2.chr17            29018085 150 -  71996105 aatattagccgggtgtgatagcatgagcctgtagtcccagctacttgggaggctgaggcaggaggatcacttcagcctag-gaagtcaaggt--cagtaagctgtggtcacgccagtgcacttcagcctgggtgacag-agagagaccctgtct
i chlSab2.chr17            I 330 C 0
s manLeu1.NW_012099233v1     200872 149 +    290775 aatattagccgagtgtagtggcatgagcctgtagtcccagctacttgggaggctgaggcaggaggatcacttcag-ctag-gaagtcaaggt--cagtaagctacggtcacgccagtgcactccagcctgggtgacag-agagagaccttgtct
i manLeu1.NW_012099233v1   I 859 C 0
s calJac3.chrUn_GL286223      26454 151 +    132061 -aaattagctgggcatggtggtgcgcgcctgtagtcccagctactcgggaggctgaggcaagagaatcgcttgaacccagagaaggaggttt--cggtgagccgagatcgtgccattgcactccagtctgggtaacaacagcgaaactccatct
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           128889 144 +  18854210 -----cagccaggtgttgtggtaggcacctgtagtcctacctactcagggggctgaggtaagagaatcgcctaagcccaa-gagctggaggttgctgtgagctgtg---acgccacagcactgtaccgaaggcgacaa-aataagactgtctct
i otoGar3.GL873550         C 0 I 1053
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244085  31 +  26524999 I
e aotNan1.NW_018509740v1     318671 1205 -    457564 I
e cebCap1.NW_016107755v1     236386 2463 -   1771730 I
e colAng1.NW_012115566v1    2652877 2310 -   3067355 M
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=39315.000000
s hg38.chr6_GL000254v2_alt   908057 8 +   4827813 caaaataa
s panTro5.chr6             29870895 8 + 175400573 caaaataa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30105467 8 + 173848474 caaaataa
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74616119 8 + 122973662 caaaataa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30100603 8 + 172585720 caaaataa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29764332 8 - 170955103 caaaataa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2811124 8 -   2996164 caaaataa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     562438 8 +    766320 caaaataa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29018235 8 -  71996105 caaaataa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     201021 8 +    290775 caaaataa
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      26605 8 +    132061 caaaacaa
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244085 31 +  26524999 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     318671 1205 -    457564 I
e cebCap1.NW_016107755v1     236386 2463 -   1771730 I
e colAng1.NW_012115566v1    2652877 2310 -   3067355 M
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=6006.000000
s hg38.chr6_GL000254v2_alt   908065 1 +   4827813 a
s panTro5.chr6             29870903 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30105475 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74616127 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30100611 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29764340 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2811132 1 -   2996164 a
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     562446 1 +    766320 a
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29018243 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     201029 1 +    290775 a
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      26613 1 +    132061 a
i calJac3.chrUn_GL286223   C 0 I 929
s aotNan1.NW_018509740v1     319876 1 -    457564 A
i aotNan1.NW_018509740v1   I 1205 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244085 31 +  26524999 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e cebCap1.NW_016107755v1     236386 2463 -   1771730 I
e colAng1.NW_012115566v1    2652877 2310 -   3067355 M
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=53670.000000
s hg38.chr6_GL000254v2_alt   908066 9 +   4827813 aataaaaCC
s panTro5.chr6             29870904 9 + 175400573 aataaaaCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30105476 9 + 173848474 aataaaaCC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74616128 9 + 122973662 aataaaaCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30100612 9 + 172585720 aataaaaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29764341 9 - 170955103 aataaaaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2811133 9 -   2996164 aataaaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     562447 9 +    766320 aataaaaac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29018244 9 -  71996105 aataaaaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     201030 9 +    290775 aataaaaac
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      27543 9 +    132061 aataaaaaC
i calJac3.chrUn_GL286223   I 929 C 0
s cebCap1.NW_016107755v1     238849 9 -   1771730 AATAAAAGC
i cebCap1.NW_016107755v1   I 2463 C 0
s aotNan1.NW_018509740v1     319877 9 -    457564 AATAAAAAC
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244085 31 +  26524999 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e colAng1.NW_012115566v1    2652877 2310 -   3067355 M
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=2106944.000000
s hg38.chr6_GL000254v2_alt   908075 310 +   4827813 ACAAAACTTATCTCAGTGGTAATTAAGG-T---AACTGtggaatcgtgtattt-acatttgccttcctgaccagaccataaactccaggagggcagggattttgactatgtggctcattttat-cccAC------------------------------------TAAAAG-------AGCTACATATTTTCTGACTCAGAGATGAGTTTCATTCCATTGTACAGAATGATCACACCAGTTTCCAAGTCTATTAA---TCTAGC-GGTCTCTGTTGTTTGTTGAAGACCT-ACTAGGTATTGGTAAAATGGGTTGCTTTGTTCCATGGGCCATAATAGTGACACATTCTAAACACATTTAAGTC
s panTro5.chr6             29870913 310 + 175400573 ACAAAACTTATCTCAGTGGTAATTAAGG-T---AACTGTGGAAtcgtgtattt-acatttgccttcctgaccagaccataaactccaggagggcagggattttgactatgtggctcattttat-cccAC------------------------------------TAAAAG-------AGCTACATATTTTCTGACTCAGAGATGAGTTTCATTCCATTGTACAGAATGATCACACCAGTTTCCAAGTCTATTAA---TCTAGC-GGTCTCTGTTGTTTGTTGAAGACCT-ACTAGGTATTGGTAAAATGGGATGCTTTGTTCCATGGGCCATAATAGTGACACATTCTAAACACATTTAAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30105485 310 + 173848474 ACAAAACTTATCTCAGTGGTAATTAAGG-T---AACTGTGGAAtcgtgtattt-acatttgccttcctgaccagaccataaactccaggagggcagggattttgactatgtggctcattttat-cccAC------------------------------------TAAAAG-------AGCTACATATTTTCTGACTCAGAGATGAGTTTCATTCCATTGTACAGAATGATCACACCAGTTTCCAAGTCTATTAA---TCTAGC-GGTCTCTGTTGTTTGTTGAAGACCT-ACTAGGTATTGGTAAAATGGGATGCTTTGTTCCATGGGCCATAATAGTGACACATTCTAAACACATTTAAGTC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74616137 311 + 122973662 ACAAAACTTATCTCAGTGGTAATTAAGG-T---AACTATGGAATCGTGTATTT-ACCTTTGCTTTCCTGACCAGACCATAAACCCCTGGAGAGCAGAGATTTTGACTATGTGGCTCATTTTAT-ACCAC------------------------------------TAAAAG-------AGTTACATATTTTCTGACTCAGAGATGAGATTCATTCCATTGTACAGAATGATCACACTAGTTTCCAAGTCTATTAA---TCTAGCGGGTCTCTGTTGTTTGTTGAAGACCT-ACTAGGTATTGGTAAAATGGGATGCTTTGTTCCATGGGCCATAATAGTGACACATTCGAAACACATTTAAGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30100621 310 + 172585720 acaaaaCTTATCTCAGTGGTAATTAAGG-T---AACTATGGAATTGTgtattt-acatttgacttcctgaccagaccataaactccaggagggcagggattatgactatgtgactcattttat-cccAC------------------------------------TAAAAG-------AGCTACATATTTTCTGACTCAGAGATGAGTTTCATTCCATTGTACAGAATGATCACACCAGTTTCCAAGTCTATTAA---TCTAGT-GGTCTTTGTTGTTTGTTGAAGACCT-ACTAGGTATTGGTAAAATGGGATGCTTTGTTCCATGGGCCATAACAGTGACACATTGTAAACACATTTAAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29764350 310 - 170955103 acaaaaCTTATCTCAGTGGTAATTAAGG-T---AACTAtggaattgtgtattt-acatttgacttcctgaccagaccataaactccaggagggcagggattatgactatgtgactcattttat-cccAC------------------------------------TAAAAG-------AGCTACATATTTTCTGACTCAGAGATGAGTTTCATTCCATTGTACAGAATGATCACACCAGTTTCCAAGTCTATTAA---TCTAGT-GGTCTTTGTTGTTTGTTGAAGACCT-ACTAGGTATTGGTAAAATGGGATGCTTTGTTCCATGGGCCATAACAGTGACACATTGTAAACACATTTAAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2811142 310 -   2996164 acaaaaCTTATCTCAGTGGTAATTAAGG-T---AACTATGGAATTGTgtattt-acatttgacttcctgaccagaccataaactccaggagggcagggattatgactatgtgactcattttat-cccAC------------------------------------TAAAAG-------AGCTACATATTTTCTGACTCAGAGATGAGTTTCATTCCATTGTACAGAATGATCACACCAGTTTCCAAGTCTATTAA---TCTAGT-GGTCTTTGTTGTTTGTTGAAGACCT-ACTAGGTATTGGTAAAATGGGATGCTTTGTTCCATGGGCCATAACAGTGACACATTGTAAACACATTTAAGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     562456 310 +    766320 acaaaaCTTATCTCAGTGGTAATTAAGG-T---AACTATGGAATTGTgtattt-acatttgacttcctgaccagaccataaactccaggagggcagggattatgactatgtgactcattttat-cccAC------------------------------------TAAAAG-------AGCTACATATTTTCTGACTCAGAGATGAGTTTCATTCCATTGTACAGAATTATCACACCAGTTTCCAAGTCTATTAA---TCTAGT-GGTCTTTGTTGTTTGTTGAAGACCT-TCTAGGTATTGGTAAAATGGGATGCTTTGTTCCATGGGCCATAACAGTGACACATTCTAAACACATTTAAGTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29018253 310 -  71996105 acaaaaCTTATCTCAGTGGTAATTAAGG-T---AACTATGGAAttatgtattt-acatttgacttcctgaccagaccataaactccaggagggcagggattttgactatgtgactcattttat-cccAC------------------------------------TAAAAG-------AGCTACATATTTTCTGACTCAGAGATGAGTTTCATTCCATTGTACAGAATGATGACACCAGTTTCCGAGTCTATTAA---TCTAGT-GGTCTTTCTTGTTTGTTGAAGACCT-ACTAGGTATTGGTAAAATGGGATGCTTTGTTCCATGGGCCATAACAGTGACACATTCTAAACACATTTAAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     201039 310 +    290775 acaaaaCTTATCTCAGTGGTGATTAAGG-T---AACTATGGAATTGTAtattt-acatttgacttcctgaccagaccataaactccaggaggacagggattatgactatgtgactcattttat-cccAC------------------------------------TAAAAG-------AGCTACATATTTTCTGACTCAGAGATGAGTTTCATTCCATTGTACAGAATTATCACACCAGTTTCCAAGTCTATTAA---TCTAGT-GGTCTTTGTTGTTTGTTGAAGACCT-TCTAGGTATTGGTAAAATGGGATGCTTTGTTCCATGGGCCATAACAGTGACACATTCTAAACACATTTAAGTC
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      27552 312 +    132061 AAAAAACTTATCTCAGTGGTAATTAAGGtt---acctatggaatcgtgtattt-acatttgccttcctgaccaaaccataaactccacgatggcagggattttgagtatgtgacttattttgtccccaC------------------------------------TAAAAG-------AGCTACACAGGTTCTGACTCAGGGATGAGTTTCCCTCTGTTGTACAGAATTATCACACCAGTTTCCAAGTCTATTAA---TCTACC-GGTCTCTGTTGTGTGTTGAAGACCT-ACTAGATATTGGTGAAATGGGATGCTTTGTTCCATGGGCCATAATAGTGATACATTCTAAACACATTTAAGAC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     238858 311 -   1771730 AAAAAACTTATCTCAGTGGTAATTAAGA-T---AACTATGGAAtcatgtattt-acatttgccttcctgaccacactataaactccataacggcaggcattttgtgtatgtgactcattttattcccac------------------------------------taaaag-------agCTACATATGTTCTGACTCAGAGATGAGTTTCCCTCTATTGTACAGAATTATCACACCACTTTCCAAGTCTATTAA---TCTAGT-GGTCTCTGTTGTTTGTTGAAGACCT-ACTAGATATTGGTGAAATGGTATGTTTTGTTCCATGGGCCATAATAGTGATACATTCTAAACACATTTAAGTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     319886 311 -    457564 AAAAAACTTATCTCAGTGGTAATTAAGG-T---AACTGtggaatcatgtattt-acatttgccttcctgaccaaaccataaactccatgatggcagggattttgagtatgtgactcattttatccccaC------------------------------------TAAAAG-------AGCTACATATGTTCTGACTCAGAGATGAGTTTCCCTCTATTGTACAGAATTATCACACCAGTTTCCAAGTCTATTAA---TCTAGT-GGTCTCTGTTGTTTGTTGAAGACCT-ACTAGATATTGGTGGAATGGGATGCTTTGTTCCATGGGCCATAATAGTGATACATTCTAAACACATTTAAGTC
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26244116 350 +  26524999 atagcactctgctcagtggtaatttctt-tttgaagtatacaaccctttctttaatgcctgccttcctaagcagaccctgagccccaagggagcagggcccccaagccaggtgctcacagcctccccaccgcagcatagtgcctgccacctgcttagaagcttaatgaaagattAAGCAACAAAACATCTTCTGACTCA---ACAGTCTTCACTCCGCCT-------TTAACTCTCCTAGTCCCAAGTCTGTTGACCTCCTGCT-GGCCTC--ATGTTTGTCACAGATCTCTCCTAGCATTGGTGAAGTGAGGTGCCTTCTTCCACAGGCCATACCAGAGACACATTGCCCACCCATCTACATC
i canFam3.chr35            I 31 I 118
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e colAng1.NW_012115566v1    2652877 2310 -   3067355 M
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=675755.000000
s hg38.chr6_GL000254v2_alt   908385 109 +   4827813 ATTCCACCCTATAAGTTACAGG---ATaataataataatagcatttattttactataaccagttttgggctgtgtgttttacttggattgtctcacttgctccttatagcat
s panTro5.chr6             29871223 109 + 175400573 ATTCCACCCTATAAGTTACAGG---ATaataataataatagcatttattttactataaccagttttgggctgtgtgttttacttggattgtctcacttgctccttatagcat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30105795 109 + 173848474 ATTCCACCCTATAAGTTACAGG---ATaataataataatagcatttattttactataaccagttttgggctgtgtgttttacttggattgtctcacttgctccttatagcat
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74616448 112 + 122973662 ATTCCACCCTATAAGTTACAGGATAATaataataataatagcatttatgttactataaccagttttgggctgtgtgttttacttggattgtctcacttgctccttatagcat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30100931 109 + 172585720 ATGCCACGCTATAAGTTACAGG---ATAATAATaataatagaatttattttactataaccagttttggactgtgtgttttacttggattgtctcacttgctcattatagcat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29764660 109 - 170955103 ATGCCACACTATAAGTTACAGG---ATAATAATaataatagaatttattttactataaccagttttgggctgtgtgttttacttggattgtctcacttgctcattatagcat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2811452 109 -   2996164 ATGCCACGCTATAAGTTACAGG---ATAATAATaataatagaatttattttactataaccagttttgggctgtgtgttttacttggattgtctcacttgctcattatagcat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     562766 109 +    766320 ATGCCACGCTATAAGTTACAGG---ATAATAATaataatagaatttattttactataaccagttttgggctgtgtgttttacttggattgtctcacttgctcattatagcat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29018563 109 -  71996105 ATGCCACGCTATAAGTTACAGG---ATAATAATaataatagaatttattttactataaccagtttggggctgtgtgttttacttggattgtctcacttgctcattatagcat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     201349 109 +    290775 ATGCCACGCTATAAGTTACAGG---ATAATAATaataatagaatttattttactataaccagttttgggctgtgtgttttacttggattgtctcacttgcttattatagcat
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      27864 103 +    132061 ATTCCACCCTGTAAATTACAGG---------ACAATAATAGCGTGAATTTTACTATAACCCGTTTtgggctgtgtgctttacttggattgcctcacttgttccttacagcat
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     239169 103 -   1771730 ATTCCACCCTATAAATTACAGa---------ataataatagcatttattttactataacccgtttagggctgtgtgctttacttggattgtctcacttgctccttatagcat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     320197 103 -    457564 ATTCCACCCTATAAGTTACAGG---------GTaataatagcatgtattttactataacccgttttgggctgtgtgctttacttggatggtctcacttgctccttacagcat
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57948108 241 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244466 118 +  26524999 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e colAng1.NW_012115566v1    2652877 2310 -   3067355 M
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=2396254.000000
s hg38.chr6_GL000254v2_alt   908494 388 +   4827813 tctctgatatagatattagtcttcccatttacaaaatgggaaaactgaaactcaaacatgtttaata-------atctgcacagtgtctcacatgtaacaagccaacatgagattagtgattccaaagaccctgctcAGCCCAATGACAAGATGTGGAAAGCACCCTCAAGGCACCCAGGGGTCTCTCTCCCTGAGAGTCCTGTGCATATCAGCAATGCTGCTAAGGATTAAATCACTGCGGTTATCACTATGTGGGTAAGATTTCTGTTAGTAGAAGATCCAGAAGATTCACCCTGCCATAGAGCAGGGGGC--CTTGGCTGAGCCATAGGCAGAATCACTCT-CCAAAAAGACTTACCAGTGTTTATCTGAATATTTTCTTTTAGCAATAACTTTA
s panTro5.chr6             29871332 382 + 175400573 tctctgatatagatattagtcttcccatttacaaaatgggaaaactgaaactcaaacatgtttaata-------atctgcacagtgtctcacatgtaacaagccaacatgagattagtgattccaaagaccctgctcAGCCCAATGACAAGATGTGGAAAGCATCCTCAAGGCACCCAGGGGTCTCTCTCCCTGAGAGTCCTCTGCATATCAGCAATGCTGCTAAGGATTAAATCACTGTGGTTATCACTATGTGAGTAAGATTTCTGTTAGTAGAAGATCCAGAAGATTCACCCTGCCATAGAGCAGGGGGC--CTTGGCTGAGCCATAGGCAGAATCACTCT-CCAAAAAGACTTACCAGTGTTTATCTGAATATTTTCTTTTAG------CTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30105904 388 + 173848474 tctctgatatagatattagtcttcccatttacaaaatgggaaaactgaaactcaaacatgtttaata-------atctgcacagtgtctcacatgtaacaagccaacatgagattagtgattccaaagaccctgctcAGCCCAATGACAAGATGTGGAAAGCATCCTCAAGGCACCCAGGGGTCTCTCTCCCTGAGAGTCCTCTGCATATCAGCAATGCTGCTAAGGATTAAATCACTGTGGTTATCACTATGTGAGTAAGATTTCTGTTAGTAGAAGATCCAGAAGATTCACCCTGCCATAGAGCAGGGGGC--CTTGGCTGAGCCATAGGCAGAATCACTCT-CCAAAAAGACTTACCAGTGTTTATCTGAATATTTTCTTTTAGCAATAGCTTTA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74616560 386 + 122973662 tctctgatatagatattattcttcccatttacaaaatgggaaaactgaaactcaaacatgtttaata-------atctgcacagtgtctcacatgtaacaagccaacatgagattagtgactccaaagaccctgcccAGCCCAATGACAAGATGTGG-AAGCATCCTCAAGGCATCCAGGGGTCTCTCTCCCTGAGAGTCCTCTGCATATCAGCAATGCTGCTAAGGATTAAACCACTGGGGTTGTCACTATGTGGGTAAGATTTCTGTTAGCAGAAGATCCAGAAGATTCACCCTGCCATAGAGCAGGGGGC--CTTGGCTGAGCCATAGGCAGAATCCCTCTCCCAAAAAGACTTACCAGCGTTTATC--AATATTTTCTTTTAGCAATAGCTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30101040 356 + 172585720 tctctgatatagatattattcttcccatttgcaaaatgggaaaaatgaaactcagacatgtttaata-------atctgcacagtgtctca--------------------------------caaagaccctgtgcagcccaatgacaagatgtggaaagcatcctcacggcacccaggggtctctctccctgagagtcctctgcatatcagcaatgctgctatggattaaaccacTGGGGTTATCACTACATGGGTAAGATTTCTGTTAGCAGAAGATTCAGAAGATTCACCCTGCCATAGAGCAGGGGGC--CTTGGCTGAGCCATAGGCAGAATCCCTCT-CCAAAAAGACTTAGCAGTGTTTATCTGAATATTTTCTTTTAGCAATAGCTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29764769 356 - 170955103 tctctgatatagatattattcttcccatttgcaaaatgggaaaaatgaaactcagacatgtttaata-------atctgcacagtgtctca--------------------------------caaagaccctgtgcagcccaatgacaagatgtggaaagcatcctcacggcacccaggggtctctctccctgagagtcctctgcatatcagcaatgctgctatggattaaaccacTGGGGTTATCACTACATGGGTAAGATTTCTGTTAGCAGAAGATTCAGAAGATTCACCCTGCCATAGAGCAGGGGGC--CTTGGCTGAGCCATAGGCAGAATCCCTCT-CCAAAAAGACTTAGCAGTGTTTATCTGAATATTTTCTTTTAGCAATAGCTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2811561 356 -   2996164 tctctgatatagatattattcttcccatttgcaaaatgggaaaaatgaaactcagacatgtttaata-------atctgcacagtgtctca--------------------------------caaagaccctgtgcagcccaatgacaagatgtggaaagcatcctcacggcacccaggggtctctctccctgagagtcttctgcatatcagcaatgctgctatggattaaaccacTGGGGTTATCACTACATGGGTAAGATTTCTGTTAGCAGAAGATTCAGAAGATTCACCCTGCCATAGAGCAGGGGGC--CTTGGCTGAGCCATAGGCAGAATCCCTCT-CCAAAAAGACTTAGCAGTGTTTATCTGAATATTTTCTTTTAGCAATAGCTTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     562875 356 +    766320 tctctgatatagatattattcttcccatttgcaaaatgggaaaaatgaaactcagacatgtttaata-------atctgcacagtgtctca--------------------------------aaaagaccctgtgcagcccaatgacaagatgtggaaagcatcctcacggcacccaggggtctctctccctgagagtcctctgcatatcagcaatgctgctatggattaaaccacTGGGGTTATCACTACATGGGTAAGATTTCTGTTAGCAGAAGATTCAGAAGATTCACCCTGCCATAGAGCAGGGGGC--CTTGGCTGAGCCATAGGCAGAATCCCTCT-CCAAAAAGACTTAGCAGTGTTTATCTGAATATTTTCTTTTAGCAATAGCTTTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29018672 356 -  71996105 tctctgatatagatattattcttcccatttgcaaaatgggaaaaatgaaactcagacatgtttaata-------atctgcacagtgtctca--------------------------------caaagaccctgtgcagcccagtgacaagatgtggaaagcatcctcaaggcacccaggggtctctctccctgagagtcctctgcatatcagcaatgctgctatggattaaaccacTGGGGTTATCACTACATGGGTAAGATTTCTGTTAGCAGAAGATTCAGAAGATTCACCCTGCCATAGAGCAGGGGGC--CTTGGCTGAGCCATAGGCAAAATCCCTCT-CCAAAAAGACTTAGCAGTGTTTATCTCAATATTTTCTTTTAGCAATAGCTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     201458 356 +    290775 tctctgatatagatattattcttcccatttgcaaaatgggaaaaatgaaactcagacatgtttaata-------atctgcacagtgtctca--------------------------------aaaagaccctgtgcagcccaatgacaagatgtggaaagcatcctcacagcacccaggggtctctctccctgagagtcctctgcatatcagcaatgctgctatggattaaaccacTGGGGTTATCACTACATGGGTAAGATTTCTGTTAGCAGAAGATTCAGAAGATTCACCCTGCCATAGAGCAGGGGGC--CTTGGCTGAGCCATAGGCAGAATCCCTCT-CCAAAAAGACTTAGCAGTGTTTATCTGAATATTTTCTTTTAGCAATAGCTTTA
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      27967 386 +    132061 tctctgatatagattctattcttcccatttacaaaatgggaaaactgaaactcaaacatgtttaata-------atctgcacagtgtctcacaTACAACAAGCCAACATGAGATTACTGATC-CAAAGACCCTGCCCAGACCAACCACAAGATGTGGAAAGCATCCTCAAGGCACCCC-CGGTCTCTCTCCCTAAGAGTCCTCTGCATATCAGCAATGCTGCTGTGGATTAAACCGCTGGGGTTATCATTACGTGGGTAAGATTTCTGTTAGTAGTAGATTCAGAATATTCATCCTGCCATAGAGCAGGGGGC--TTTGACTGAGCCATAGGCAGAATCCCTCT-CCAAAATGACTTACCAGTGTTTATCTGAATATTCCCTTTTGGTAATAGCTTTA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     239272 385 -   1771730 tctctggtatagatactattcttcccatttacaaaatgggaaaactg-aactcaaacatgtttagta-------atctgcacagtgtctcacatgcaacaagccaACATAAGATTTCTGGTC-CAAAGACCCTGCCCAGACCAACCACAAGATGTGGAAAGCATCCTCAAGGCATCCC-GGGTCTCTCTCCCTGAAAGTCCTCTGCATATCAGCAATGCTGCTGTGGATTAAACCACTGGGGTTATCATTACGTGGGTAAGATTTCTGTTAGCAGTAGATTCAGAATATTCACCCTGCCATAGAGCAGGGGGC--TTTGACTGAGCCATAGGCAGAATCCCTCT-CCAAAACGACTTACCAGTGTTTATCTGAATATTCCCTTTTAGCAACAGCTTTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     320300 383 -    457564 tctctgatatagatactattcttcccatttacaaaatgggaaaaccgaaattcaaacatgtttaata-------atccgcacagtgtctcacaTGCAACAAGCCAACATGAGATTACTTATC-CAAAGACCCTGCC---ACCAACCACAAGATGTGGAAAGCATCCTCAAGTCACCCC-GGGTCTCTCTCCCTAAGAGTCCTCTGCATATCAGCAATGCTGCTGTGGATTAAACCGCTGGGGTTATCATTACGTGGATAAGATTTCTGTTACCAGTAGATTCAGAAGATTCACCCTGCCATGGAGCAGGGGGC--TTTGACTGAGCCATAGGCAGAATCCCTCT-CCAAAATGACTTACCAGTGTTTATCTGCATATTTCCTTTTGTCAATAGCTTTA
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57948349 335 -  94987271 TTTCTGACATAGATACTACTATTTCCATTCTATTAATAAGA-------AACTCAAACTTATGTGACATGGGAAGATGAAAACACTGACTC---------------------------------CAAAGATCCTACTTGACATAAGGTGCAGCTGTGGGAAGCGTTGTCTAG----CTTGTAGTCTATCTTCCTGAAACATCTCTGTGTTTCTGTAGCGCTGTTGTAGATAAATCCACTAGGGTCATCGTTACCTGGATAACAGTTCTTCTGGGAGTAG---------ATTCATCTTTCTGTGGAGCTGCCAGCAGTGTGGCTGGGCTCTA--------CCCTCT-CCAGCAACTTCTTCTGCTGTGTGCC-ATATGTCATGTTTTATCAATCTCTTTG
i mm10.chr17               I 241 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244466 118 +  26524999 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e colAng1.NW_012115566v1    2652877 2310 -   3067355 M
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=2288801.000000
s hg38.chr6_GL000254v2_alt   908882 282 +   4827813 CTTACTTGCGTTATTTGT-AGGTGCTGCCATTTTGCTGTCCATGATGCTACTATGCTCAGTACCCTTACTGTACTGCCCAGTAGCCCTTACCATTAGCAAACTAAAGCTTCCTCACCAGCATTAGACCTGGCAAGACCTCTGTGCATCCCCCACCACCCATGAGCATTTTGATAGCATTGCAAGTATAATCTCTGGTGCAT-GCACAAATTCTGCTCCACATAGCAGCGCTAATGGT--GGCCCACATCGGGAATAGGAGTAGAGCAAGATGT----TACCAGGAAGAGG
s panTro5.chr6             29871714 282 + 175400573 CTTACTTGCGTTATTTGT-AGGTGCTGCCATTTTGCTGTCCATGATGCTACTATGCTCAGTACCCTTACTGTACTGCCCAGTAGCCCTTACCATTAGCGAACTAAAGCTTCCTCACCAGCATTAGACCTGGCAAGACCTCTGTGCATCCCCCACCACCCATGAGTATTTTGATAGCATTGCAAGTATAATCTCTGGTGCAT-GCACAAATTCTGCTCCACATAGCAGCGCTAATGGT--GGCCCACATCGGGAATAGGAGTAGAGCAAGATGT----TACCAGGAAGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30106292 282 + 173848474 CTTACTTGCGTTATTTGT-AGGTGCTGCCATTTTGCTGTCCATGATGCTACTATGCTCAGTACCCTTACTGTACTGCCCAGTAGCCCTTACCATTAGCGAACTAAAGCTTCCTCACCAGCATTAGACCTGGCAAGACCTCTGTGCATCCCCCACCACCCATGAGTATTTTGATAGCATTGCAAGTATAATCTCTGGTGCAT-GCACAAATTCTGCTCCACATAGCAGCGCTAATGGT--GGCCCACATCGGGAATAGGAGTAGAGCAAGATGT----TACCAGGAAGAGG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74616946 275 + 122973662 CTTACTTGCCTTATTTTT-AGGTGCTGCCATTTTGCTGTCCATGATGCTACTATGCTCGGTACCCTTACTGTACTGCCCAGGAGCCCTTACCATTAGCAAACTAAAGCTTCCTCACCAGCATTAGACCTGGCAGGACCTCTATGCATCCCCCACCACCCATGAGTATTTTGATAGCATTGCAAGTATAATCTCTGGTGCAT-GCACAAATTCTGCTCCACATAGCAGCGCTAATGGT--GGCCCACATTGGGAATAGGAGTAGAGCAAG-----------CAGGAAGAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30101396 282 + 172585720 CTTACTTGCCTTATTTTT-AGGTGCTGCCGTTTTGCTGTCCATGATGCTACTATGTTCAGTACCCTTACTGTACTGCCCAGTAGCCCTTACCATTAGCAAACTAAAGCTTCCTTACCAGCATTAGACCTGGCAGGACCTCTGTGCATCCCCCACCACCCATGAGTATTTTGATAGCATTGCAAGTATAATCTCTGGTGCAT-GCACAAATTCTGCTCCACATAGTGGCATTAATGGT--GGCCCACATCGGGAACAGGAGTAGAGCAAGATGT----TACCAGGAAGAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29765125 282 - 170955103 CTTACTTGCCTTATTTTT-AGGTGCTGCCGTTTTGCTGTCCATGATGCTACTATGTTCAGTACCCTTACTGTACTGCCCAGTAGCCCTTACCATTAGCAAACTAAAGCTTCCTTACCAGCATTAGACCTGGCAGGACCTCTGTGCATCCCCCACCACCCATGAGTATTTTGATAGCATTGCAAGTATAATCTCTGGTGCAT-GCACAAATTCTGCTCCACATAGTGGCATTAATGGT--GGCCCACATCGGGAACAGGAGTAGAGCAAGATGT----TACCAGGAAGAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2811917 282 -   2996164 CTTACTTGCCTTATTTTT-AGGTGCTGCCGTTTTGCTGTCCATGATGCTACTATGTTCAGTACCCTTACTGTACTGCCCAGTAGCCCTTACCATTAGCAAACTAAAGCTTCCTTACCAGCATTAGACCTGGCAGGACCTCTGTGCATCCCCCACCACCCATGAGTATTTTGATAGCATTGCAAGTATAATCTCTGGTGCAT-GCACAAATTCTGCTCCACATAGTGGCATTAATGGT--GGCCCACATCGGGAACAGGAGTAGAGCAAGATGT----TACCAGGAAGAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     563231 282 +    766320 CTTACTTGCCTTATTTTT-AGGTGCTGCCATTTTGCTGTCCATGATGCTACTATGTTCAGTACCCTTACTGTACTGCCCAGTAGCCCTTACCATTAGCAAACTAAAGCTTCCTTACCAGCATTAGACCTGGCAGGACCTCTGTGCATCCCCCACCACCCATGAGTATTTTGATAGCATTGCAAGTATAATCTCTGGTGCAT-GCACAAATTCTGCTCCACATAGTGGCATTAATGGT--GGCCCACATCGGGAACAGGAGTAGAGCAAGATGT----TACCAGGAAGAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29019028 282 -  71996105 CTTACTTGCCTTATTTTT-AGGTGCTGCCGTTTTGCTGTCCACGATGCTACTATGTTTGGTACCCTTACTGTACTGCCCAGTAGCCCTTACCATTAGCAAACTAAAGCTTCCTCACCAGCATTAGACCTGGCAGGACCTCTGTGCATCCCCCACCACCCATGAGTATTTTGATAGCATTGCAAGTATAATCTCTGGTGCAT-GCACAAATTCTGCTCCACATAGTGGCATTAATGGT--GGCCCACATCGGGAACAGGAGTAGAGCAAGATGT----TACCAGGAAGAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     201814 282 +    290775 CTTACTTGCCTTATTTTT-AGGTGCTGCCATTTTGCTGTCCATGATGCTACTATGTTCAGTACCCTTACTGTACTGCCCAGTAGCCCTTACCATTAGCAAACTAAAGCTTCCTTACCAGCATTAGACCTGGCAGGACCTCTGTGCATCCCCCACCACCCATGAGTATTTTGATAGCATTGCAAGTATAATCTCTGGTGCAT-GCACAAATTCTGCTCCACATAGTGGCATTAATGGT--GGCCCACATCGGGAACAGGAGTAGAGCAAGATGT----TACCAGGAAGAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2655221 282 -   3067355 CTTACTTGCCTTATTTTT-AGGTGCTGCCATTTTGCTGTCCATGATGCTACTATGTTCAGTACCCTTACTGTACTGCCCAGTAGCCCTTACCATTACCAAACTAAAGCTTCCTCACCAGCATTAGACCTGGCAGGACCTCTATGCATCCCCCACCACCCATGAGTATTTTGATAGCATCGCAAGTATAATTTCTGGTGCAT-GCACAAATTCTGCTCCACATAGTGGCATTAATGGT--GGCCCACATCGGGAACAGGAGTAGAGCAAGATGT----TATCAGGAAGAGG
i colAng1.NW_012115566v1   M 2310 C 0
s calJac3.chrUn_GL286223      28353 283 +    132061 CTTACTTGCCTTATTTTTAAGGAGCTGCCATTTCGCTGTCCATGATGCTACGATTCTTGGTATCCTTACTGTACTGTCCAGTAGCCCTTACCATTAGCAAACTAAAGCTTCCTTACCAGCATTAGACCTGGCAGGAACTCTGTGCATCCCCCACCACTCATGAGTATTTTGATAGCATTGCAAGTATAATCTCTGGCATGT-GCACAAATTCTGCTCCACATGGCAGAGCTAATGGT--GGCCCAAGTTGGGAATAGTAGTAGAGCAAGATGT----TACCAGGAAGAGG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     239657 282 -   1771730 CTTACTTGCCTTATTTTT-AGGAGCTTCCATTTTGCTGTCTGTGATGCTACTATGCTCAGTATCCTTACTGTACTGTCCAGTAGCCCTTACCATTAGCAAACTAAAGCTTTCTTATCAGCATTAGATCTGGCAGGACCTCTGTGCATCCCCCACGACTCATGAGTATTTTGATAGCATTGCAAGTATAATCTCTGGCACAT-GCACAAATTCTGTTCCACATGGCAGAGCTAATAGT--GGCCCAAGTTGGGAATAGTAGTAGAGCAAGATGT----TACCAGGAAGAGG
i cebCap1.NW_016107755v1   C 0 I 353
s aotNan1.NW_018509740v1     320683 282 -    457564 CTTACTTGCCTTATTTTT-AGGAGCTGCCATTTCGTTGTCTGTGATGCTACTATGCTCAGTATCCTTACTGTACTGTCCAGTGGCCCTTACCATTAGAAAACTAAAGCTTCCTTACCAGCACTAGACCTGGCAGGACCTCTGTGCATCCCCCACCACTCATGAGTATTTTGATAGAATTGCAAGTATAATCTCTGGCATGT-GCACAAATTCTGCTCCACATGGCAGAGCTAATGGT--GGCCCAAGTTGGGAATAGTAGTAGAGCAAGATGT----TACCAGGAAGAGG
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57948684 249 -  94987271 CTAATCTGCTTCATTTAT-AGAA----------TGCTATCTAGGATTCGGTCATACCAGGTA-CATTGCT-TCCTGCCTAGCAGCTACTGTCTTTAGGAAATTTAAGTTTCTTC-CCAGCACTGGAAGTGGCAGAATCTCTGGGC----------------------CTTGAAGACA----ATGTCTAATCTCTAGTACATAATACAAGTTCTACTCCACATAGCAGTACTAATAATTGTGCCTAAGTCAGG-TCACTAGTACAGTAAGGTATCTCCTACCAAGAGGAAG
i mm10.chr17               C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244466 118 +  26524999 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=44255.000000
s hg38.chr6_GL000254v2_alt   909164 8 +   4827813 -GCCTTACT
s panTro5.chr6             29871996 8 + 175400573 -GCCTTACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30106574 8 + 173848474 -GCCTTACT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74617221 8 + 122973662 -GCCTTACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30101678 8 + 172585720 -GCCTTACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29765407 8 - 170955103 -GCCTTACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2812199 8 -   2996164 -GCCTTACT
i macNem1.NW_012011356v1   C 0 I 614
s cerAty1.NW_012002711v1     563513 8 +    766320 -GCCTTACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29019310 8 -  71996105 -GCCTTACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     202096 8 +    290775 -GCCTTACT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2655503 8 -   3067355 -GCCTTACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      28636 8 +    132061 -CCACTACT
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     320965 8 -    457564 -CCCCTACT
i aotNan1.NW_018509740v1   C 0 I 336
s mm10.chr17               57948933 8 -  94987271 GGCCAAAT-
i mm10.chr17               C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244466 118 +  26524999 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e cebCap1.NW_016107755v1     239939 353 -   1771730 I
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=6925.000000
s hg38.chr6_GL000254v2_alt   909172 9 +   4827813 TCTCTTCTC
s panTro5.chr6             29872004 9 + 175400573 TCTCTTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30106582 9 + 173848474 TCTCTTCTC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74617229 9 + 122973662 TCTCTTCTC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chrUn_GL286223      28644 9 +    132061 GTTCTTCTT
i calJac3.chrUn_GL286223   C 0 C 0
s mm10.chr17               57948941 8 -  94987271 -CAATGCTC
i mm10.chr17               C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244466 118 +  26524999 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     320973 336 -    457564 I
e cebCap1.NW_016107755v1     239939 353 -   1771730 I
e colAng1.NW_012115566v1    2655511 0 -   3067355 C
e manLeu1.NW_012099233v1     202104 0 +    290775 C
e chlSab2.chr17            29019318 0 -  71996105 C
e cerAty1.NW_012002711v1     563521 0 +    766320 C
e macNem1.NW_012011356v1    2812207 614 -   2996164 I
e macFas5.chr4             29765415 0 - 170955103 C
e rheMac8.chr4             30101686 0 + 172585720 C
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=43186.000000
s hg38.chr6_GL000254v2_alt   909181 10 +   4827813 TCTCTTCTCG
s panTro5.chr6             29872013 10 + 175400573 TCTCTTCTCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30106591 10 + 173848474 TCTCTTCTCG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74617238 10 + 122973662 TCTCTTCTCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30101686 10 + 172585720 TCTCTTCTCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29765415 10 - 170955103 TCTCTTCTCG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     563521 10 +    766320 TCTCTTCTCG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29019318 10 -  71996105 TTTCTTCTCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     202104 10 +    290775 TCTCTTCTCG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2655511 10 -   3067355 TCTCTTCTCG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      28653 10 +    132061 GCTGCTCTTG
i calJac3.chrUn_GL286223   C 0 I 290
s mm10.chr17               57948949  8 -  94987271 CTTCTCCT--
i mm10.chr17               C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244466 118 +  26524999 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     320973 336 -    457564 I
e cebCap1.NW_016107755v1     239939 353 -   1771730 I
e macNem1.NW_012011356v1    2812207 614 -   2996164 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=1020894.000000
s hg38.chr6_GL000254v2_alt   909191 311 +   4827813 CTGCttttttgtttgtttgtttgtttgttttgttttgtttttt-agatggagtcttgctccattgcccaggc--gagtgtagtggcgcaatctcagttcactgcaacctctgcctcccagg-------------cctgtcccagcctcccgagtagctgggactacagatgcctgccaccacgcctggctaatttttgtgtttttagtagagatggggattcaccttgttggtcgggctaatctcaaactcctgacctcaggt-gattcacacgccttgacctctcaaagtgctgggattataggcatgagccactacgttcagccAT
s panTro5.chr6             29872023 307 + 175400573 CTGCttt----tttgtttgtttgtttggtttggtttggttttt-agatggagtcttgctccattgcccaggc--gagtgtagtggcgcaatctcagttcactgcaacctctgcctcccagg-------------cctgtctcagcctcccgagtagctgggactacagatgcctgccaccacgcctggctaatttttgtgtttttagtagagatggggattcaccttgttggtcgggctaatctcaaactcctgacctcaggt-gattcacacgccttgacctctcaaagtgctgggattataggcatgagccactacgttcagccAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30106601 307 + 173848474 CTGCttt----tttgtttgtttgtttgttttggtttggttttt-agatggagtcttgctccattgcccaggc--gagtgtagtggcgcaatctcagttcactgcaacctctgcctcccagg-------------cctgtctcagcctcccgagtagctgggactacagatgcctgccaccacgcctggctaatttttgtgtttttagtagagatggggattcaccttgttggtcgggctaatctcaaactcctgacctcaggt-gattcacacaccttgacctctccaagtgctgggattataggcatgagccactacgttcagccAT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74617248 296 + 122973662 CTGCCtt----------------tttattttgttttgttttttgagatggagtcttgctccgttgcccaggt--gagtgtagtggtgcaatctcagctcactgcaacctccgcctcccagg-------------cctgtctcagcctcctgagtagctgggactacaggtgcctgccaccacacccggctaatttttgtgtttttagtagagatggggtttcaccttgttagtcgggctaatctcaaactcctgacctcaggt-gattcagatgccttgacctctcaaagtgctgggattataggcatgagccaccacgttcagccAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30101696 305 + 172585720 CTGCC----------------------tttttttttttttttt-tgatggagtcttgctccgttgcccaggctggagtgtagtggtgcagtctcagctcactgcaacctccgcctcctaggttcaagctattctcctgtctcagtctcctgagtagctgggactacaggcgcctgccaacacgcccggctagtttttgcatttttagtagagatggggtttcacattgttggtcgggctagtctcaaactcctgacctcagatggatccacatgccttggcctctcaaagtgctgggattataagcatgagccaccatgttcggccAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29765425 309 - 170955103 CTGCC------------------Cttttttttttttttttttt-tgatggagtcttgctccgttgcccaggctggagtgtagtggtgcagtctcagctcactgcaacctccgcctcctaggttcaagctattctcctgtctcagtctcctgagtagctgggactacaggcgcctgccaacacgcccggctagtttttgtatttttagtagagatggggtttcacattgttggtcaggctagtctcaaactcctgacctcagatggatccacatgccttggcctctcaaagtgctgggattataagcatgagccaccatgttcggccAT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     563531 304 +    766320 CTGCC----------------------tttttttttttttttt-t-atggagtcttgctccgttgcccaggctggagtgtagtggtgcagtcgcagctcactgcaacttctgcctcccaggttcaagctattctcctgtctcagtctcccgagtagctgggactacaggcgcctgccaacacgcccggctagtttttgtatttttagtagagatggggtttcacattgttggttgggctagtctcaaactcctgacctcaggtggatccacatgccttggcctctcaaagtgctgggattataagcatgagccatcatgttcggccGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29019328 313 -  71996105 CTGCCtt----tt----------tttttttttttttttttttt-tgatggagtcttgcttcgttgcccaggctggagtgtagtggtgcagtctcagctcactgcaacctccgcctcccaggttcaagctattctcctgtctcagtctcccgagtagctgggactacaggcgcctgccaacacgcccggcaaatttttgtatttttagtagagatggggtttcacattgttggtcgggctagtctcaaactcctgacctcaggtggatccacatgccttggcctctcaaagtgctgggattataagcatgagccaccatgttcggccCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     202114 312 +    290775 CTGCC-t----tt----------tttttttttttttttttttt-tgatggagtcttgctccgttgcccaggctggagtgtagtggtgcagtctcagctcactgcaacctctgcctcccaggttcaagctattctcctgtctcagtctcccgagtagctgggactacaggcgcctgccaacacgcccggctagtttttgtatttttagtagagatggggtttcacattgttggttgggctagtctcaaactcctgacctcaggtggatccacatgccttggcctctcaaagtgctgggattataagcatgagccatcatgttcggccGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2655521 297 -   3067355 CTGCC-----------------------------ttttttttt-tgatggagtcttgctccgttgcccaggctggagtgtagtggtgcagtctcagctcactgcaacctccgcctcccaggttcaagctattctcccgtctcag-ctcccgagtagctgggactacaggcgcctgccaacacgcctggcaaatttttgtatttttagtaaagatgtggtttcacattgttggtcgggctagtctcaaactcctgacctcaggtggatccacatgccttggcctctcaaagtgctgggattataagcatgagccaccatgttcggccAT
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57948957 174 -  94987271 --------------------------------------------------GGTCTTGCCTC--TGC------------------------TCTCCTACCACTACTCCCTCTTCTTCTCAGATTC----------TCTCTTCC---------------------------------------------------TTTtttggttttggctttga--gggtctaa---tgtggcccaggctagtctccaact-----------gaagatcttcctttctcagactc-ctgtgtgccaggattataggtgtgcaccactgtgcctggctAT
i mm10.chr17               C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244466 118 +  26524999 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     320973 336 -    457564 I
e cebCap1.NW_016107755v1     239939 353 -   1771730 I
e calJac3.chrUn_GL286223      28663 290 +    132061 I
e macNem1.NW_012011356v1    2812207 614 -   2996164 I
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=52657.000000
s hg38.chr6_GL000254v2_alt   909502 11 +   4827813 T-------CGCTGCTCTT
s panTro5.chr6             29872330 11 + 175400573 T-------CGCTGCTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30106908 11 + 173848474 T-------CGCTGCTCTT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74617544 11 + 122973662 T-------TGCTGCTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30102001 11 + 172585720 T-------CGCTGCTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29765734 11 - 170955103 T-------CGCTGCTCTT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     563835 11 +    766320 T-------CGCTGCTCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29019641 11 -  71996105 T-------CGCTGCTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     202426 11 +    290775 T-------CGCTGCTCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2655818 11 -   3067355 T-------CGCTGCTCTT
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57949131 18 -  94987271 TGTCACTCTGCTGTTCTC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26244584 11 +  26524999 T-------TGGTGCTCTT
i canFam3.chr35            I 118 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     320973 336 -    457564 I
e cebCap1.NW_016107755v1     239939 353 -   1771730 I
e calJac3.chrUn_GL286223      28663 290 +    132061 I
e macNem1.NW_012011356v1    2812207 614 -   2996164 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=16065.000000
s hg38.chr6_GL000254v2_alt   909513 3 +   4827813 AAG
s panTro5.chr6             29872341 3 + 175400573 AAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30106919 3 + 173848474 AAG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74617555 3 + 122973662 AAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30102012 3 + 172585720 AAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29765745 3 - 170955103 AAG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     563846 3 +    766320 AAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29019652 3 -  71996105 AAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     202437 3 +    290775 AAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2655829 3 -   3067355 AAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      28953 3 +    132061 aat
i calJac3.chrUn_GL286223   I 290 C 0
s aotNan1.NW_018509740v1     321309 3 -    457564 aag
i aotNan1.NW_018509740v1   I 336 C 0
s mm10.chr17               57949149 2 -  94987271 -TG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26244595 3 +  26524999 CAG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e cebCap1.NW_016107755v1     239939 353 -   1771730 I
e macNem1.NW_012011356v1    2812207 614 -   2996164 I
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=411588.000000
s hg38.chr6_GL000254v2_alt   909516 54 +   4827813 AAAGTACTTTTCCAAAGATCATTCTCCTTGGTCTTATCTTAAGATCCTGCTATG
s panTro5.chr6             29872344 54 + 175400573 AAAGTACTTTTCCAAAGATCATTCTCCTTGGTCTTATCTTAAGATCCTGCTATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30106922 54 + 173848474 AAAGTACTTTTCCAAAGATCATTCTCCTTGGTCTTATCTTAAGATCCTGCTATG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74617558 54 + 122973662 AAAGTACTTTTCCAAGGATCATTCTCCTTGGTCTTATCTCAAGATCCTGCTATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30102015 54 + 172585720 AAAGTACTTTTCCAAGGATCATTCTCCTTGGTCTTATCTCAAGATCCTGCTAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29765748 54 - 170955103 AAAGTACTTTTCCAAGGATCATTCTCCTTGGTCTTATCTCAAGATCCTGCTATG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     563849 54 +    766320 AAAGTACTTTTCCAAGGATCATTCTCCTTGGTCTTATCTCAAGATCCTGCTATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29019655 54 -  71996105 AAAGTACTTTTCCAAGGATCATTCTCCTTGGTCTTATCTCAAGATCCTGCTATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     202440 54 +    290775 AAAGTACTTTTCCAAGGATCATTCTCCTTGGTCTTATCTCAAGATCCTGCTATG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2655832 54 -   3067355 AAAGTACTTTTCCAAGGATCATTCTCCTTGGTCTTATCTCAAGGTCCTACTATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      28956 54 +    132061 aaaGTACGTTTCCAAGGATCATTCTCCTTGGTCATGTTTCAAGATCCTGCTATG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     240292 54 -   1771730 aaaGTACCTTTCCAAGGATCATTCTCCTTGGTCATGTTTCAAAATCCTGCTATG
i cebCap1.NW_016107755v1   I 353 C 0
s aotNan1.NW_018509740v1     321312 54 -    457564 aaaGTACCTTTCCAAGGATCATTCTCCTTGGTCAGGTTTCAAGATCCTGCTATG
i aotNan1.NW_018509740v1   C 0 M 6939
s mm10.chr17               57949151 54 -  94987271 AAAATGTCCATCAAAAGATCATGGTTCTTGAGTTTATACCAAACACCTGCTCCA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26244598 53 +  26524999 AAAGTGCCGTACC-AGAAGCAGCCTCTCTGGTCCTATCCCAAGATCCTGCTAGG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e macNem1.NW_012011356v1    2812207 614 -   2996164 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=376472.000000
s hg38.chr6_GL000254v2_alt   909570 62 +   4827813 AAATAGGGACACGGGTGGAAAATTTTCACCTGTGCCTGCAGCAAACTTTCATTCTGTCTGAA
s panTro5.chr6             29872398 62 + 175400573 AAATAGGGACACAGGTGGAAAATTTTCACCTGTGCCTGCAGCAAACTTTCATTCTGTCTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30106976 62 + 173848474 AAATAGGGACACAGGTGGAAAATTTTCACCTGTGCCTGCAGCAAACTTTCATTCTGTCTGAA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74617612 62 + 122973662 AAATAGGGACACAAGTGGAAAATTTTCACCTGTGCCTGCAGCAAACTTTCATTCTGTCTGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30102069 62 + 172585720 AACTAGGGATACAGGTGGAAAATTTTCACTTGTACCTGCAGCAAACTTTCATTCTGCCTGAA
i rheMac8.chr4             C 0 I 158
s macFas5.chr4             29765802 62 - 170955103 AACTAGGGATACAGGTGGAAAATTTTCACTTGTACCTGCAGCAAACTTTCATTCTGTCTGAA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     563903 62 +    766320 AACTAGGGATACAGGTGGAAAATTTTCACTTGTACCTGCAGCAAACTTTCATTCTGTCTGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29019709 62 -  71996105 AACTAGGGACACAGGTGGAAAATTTTCACTTGTACCTGCAGCAAACTTTCATTCTGTCTGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     202494 62 +    290775 AACTAGGGATACAGGTGGAAAATTTTCACTTGTACCTGCAGCAAACTTTCATTCTGTCTGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2655886 62 -   3067355 AACTAGGGATACGGGTGGAAAATTTTCACTTGTACCTGCAGCAAACTTTCATTCTGTCTGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      29010 60 +    132061 AAATAGGGACACAGGTGGAAAATTTTCACCTG--CCTGCATTAAACTTTCATTCCGTCTGAA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     240346 60 -   1771730 AAATAGGGACACAGATAGAAAATTTTCACCTG--CCTGCATTAAACTTTCATTCCGTCTGAA
i cebCap1.NW_016107755v1   C 0 C 0
s mm10.chr17               57949205 56 -  94987271 ------CTACATGGATAGTAAATCTTCGCCTGTGCCAGGATCCAACTTTCATTCTCTATGGA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26244651 60 +  26524999 AGGTAGGGGCAAAGCTGGAGAATTTCCAGCT-TGTCGAGAGCAGACATGCATCCTGCTGGA-
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e macNem1.NW_012011356v1    2812207 614 -   2996164 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=9406.000000
s hg38.chr6_GL000254v2_alt   909632 2 +   4827813 TA
s panTro5.chr6             29872460 2 + 175400573 TA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30107038 2 + 173848474 TA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74617674 2 + 122973662 TA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29765864 2 - 170955103 CA
i macFas5.chr4             C 0 I 152
s cerAty1.NW_012002711v1     563965 2 +    766320 CA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29019771 2 -  71996105 CA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     202556 2 +    290775 CA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2655948 2 -   3067355 CA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      29070 2 +    132061 TA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     240406 2 -   1771730 TA
i cebCap1.NW_016107755v1   C 0 C 0
s mm10.chr17               57949261 2 -  94987271 TA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26244711 2 +  26524999 TA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e macNem1.NW_012011356v1    2812207 614 -   2996164 I
e rheMac8.chr4             30102131 158 + 172585720 I
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=22153.000000
s hg38.chr6_GL000254v2_alt   909634 5 +   4827813 ATTAT
s panTro5.chr6             29872462 5 + 175400573 ATTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30107040 5 + 173848474 ATTAT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74617676 5 + 122973662 ATTAT
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002711v1     563967 5 +    766320 ATTAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29019773 5 -  71996105 ATTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     202558 5 +    290775 ATTAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2655950 5 -   3067355 ATTAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      29072 5 +    132061 ATTTT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     240408 5 -   1771730 ATTTT
i cebCap1.NW_016107755v1   C 0 C 0
s mm10.chr17               57949263 5 -  94987271 AGTAT
i mm10.chr17               C 0 I 2
s canFam3.chr35            26244713 5 +  26524999 ATTAC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e macNem1.NW_012011356v1    2812207 614 -   2996164 I
e macFas5.chr4             29765866 152 - 170955103 I
e rheMac8.chr4             30102131 158 + 172585720 I
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=14817.000000
s hg38.chr6_GL000254v2_alt   909639 4 +   4827813 AAGT
s panTro5.chr6             29872467 4 + 175400573 AAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30107045 4 + 173848474 AAGT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74617681 4 + 122973662 AAGT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29766018 3 - 170955103 -agg
i macFas5.chr4             I 152 I 1
s cerAty1.NW_012002711v1     563972 4 +    766320 AAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29019778 4 -  71996105 AAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     202563 4 +    290775 AAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2655955 4 -   3067355 AAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      29077 4 +    132061 AAGT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     240413 4 -   1771730 AAGT
i cebCap1.NW_016107755v1   C 0 C 0
s mm10.chr17               57949270 4 -  94987271 CCGT
i mm10.chr17               I 2 C 0
s canFam3.chr35            26244718 4 +  26524999 AAGT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e macNem1.NW_012011356v1    2812207 614 -   2996164 I
e rheMac8.chr4             30102131 158 + 172585720 I
e gorGor5.CYUI01015250v1    5906743 0 +   6154872 C

a score=215918.000000
s hg38.chr6_GL000254v2_alt   909643 30 +   4827813 AGGATGGGGGAGGGGAGAAGAAAAAGAAAG
s panTro5.chr6             29872471 30 + 175400573 AGGATGGGGGAGGGGAGAAGAAAAAGAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30107049 30 + 173848474 AGGATGGGGGAGGGGAGAAGAAAAAGAAAG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74617685 30 + 122973662 AGGATGGGGGAGGGGAGAAGAAAAAGAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30102289 30 + 172585720 aggaagggggaggggagaagaaaaagaaag
i rheMac8.chr4             I 158 C 0
s macFas5.chr4             29766022 30 - 170955103 aggaagggggaggggagAAGAAAAAGAAAG
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2812821 30 -   2996164 aggaagggGGAGGGGAGAAGAAAAAGAAAG
i macNem1.NW_012011356v1   I 614 C 0
s cerAty1.NW_012002711v1     563976 30 +    766320 AGGATGGGGGAGGGGAGAAGAAAAAGAAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29019782 30 -  71996105 AGGATGGGGGAGGGGAGAAGGAAAAGAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     202567 30 +    290775 AGGATGGGGGAGGGGAGAAGAAAAAGAAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2655959 30 -   3067355 AGGATGGAGGAGGGGAGAAGAAAAAGAAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      29081 28 +    132061 AGGATGGGGGAGGGAAGAAGAAATAGAA--
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     240417 28 -   1771730 AGGATGGGGGAGGGGAGAAGAAATAGAA--
i cebCap1.NW_016107755v1   C 0 C 0
s mm10.chr17               57949274 30 -  94987271 AGGATAAGGGATTGCCAGACAAGAGGAAGG
i mm10.chr17               C 0 I 2992
s canFam3.chr35            26244722 30 +  26524999 AGGAGCAGGGAGGAGACAAAGGAGGGACAG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=445403.000000
s hg38.chr6_GL000254v2_alt   909673 72 +   4827813 ------AGACCATGATCTGAAGAACCTTA--------ACT-GTTCCCCTGTTATCCCTGGTTACTGTCAAGCAGCTAGCAGGCTAGG
s panTro5.chr6             29872501 72 + 175400573 ------AGACCATGATCTGAAGAATCTTA--------ACT-GTTCCCCTGTTATCCCTGGTTACTGTCAAGCAGCTAGCAGGCTAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30107079 72 + 173848474 ------AGACCATGATCTGAAGAATCTTA--------ACT-GTTCCCCTGTTATCCCTGGTTACTGTCAAGCAGCTAGCAGGCTAGG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74617715 72 + 122973662 ------AGACAATGATCTGAAGAACCTTA--------ACT-GTTCCCCTGTTATCCCTGGTTACTGTCAAACAGCTAGCAGGCTAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30102319 72 + 172585720 ------ggaCCATGATCTGAAGAACCTTA--------ACT-GTTCCCATGTTATCCCTGGTTACTGTCAAGCAGCTAGCAGGCTAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29766052 72 - 170955103 ------GGACCATGATCTGAAGAACCTTA--------ACT-GTTCCCATGTTATCCCTGGTTACTGTCAAGCAGCTAGCGGGCTAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2812851 72 -   2996164 ------GGACCATGATCTGAAGAACCTTA--------ACT-GTTCCCATGTTATCCCTGGTTACTGTCAAGCAGCTAGCGGGCTAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     564006 72 +    766320 ------GGACCATGATCTGAAGAACCTTA--------ACT-GTTCCCCTCTTATCCCTGGTTACTGTCAAGCAGCTAGCAGGCTAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29019812 72 -  71996105 ------GGACCATGATCTGAAGAACCTTA--------ACT-GTTCCCCCCTTATCCCTGGTTACTGTCAAGCAGCTAGCAGGCTAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     202597 72 +    290775 ------GGACCATGATCTGAAGAACCTTA--------ACT-GTTCCCCTCTTATCCCTGGTTACTGTCAAGCAGCTAGCAGGCTAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2655989 72 -   3067355 ------GGACCATGACCTGAAGAACCTTA--------ACT-GTTCCCATGTTATCCCTGGTTACTGTCAAGCACCTAGCAGGCTAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      29109 64 +    132061 -------GACCACGATCTGAAGA----T---------ACT-GTACCC--ATTATCTCTGGTTGCTATCAAGCAGCTAGCAGGCTAGG
i calJac3.chrUn_GL286223   C 0 I 1722
s cebCap1.NW_016107755v1     240445 68 -   1771730 -------GACCATGATCTGAAGAACCTT---------ACA-ATTCCT--GTTATCTCTGGCTGCTATCAAGCAGCTAGCAGGCTAGG
i cebCap1.NW_016107755v1   C 0 C 0
s canFam3.chr35            26244752 83 +  26524999 ACAGGTGGACCAAGAGCCCTCAGACCTCAGGAAAAGGACTGGTGGCCCCATTGTCCCTGGTTGTTGTCAGGCAGACAGCCAGT----
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=55398.000000
s hg38.chr6_GL000254v2_alt   909745 12 +   4827813 CTAGGTGGGGTA
s panTro5.chr6             29872573 12 + 175400573 CTAGGTGGGGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30107151 12 + 173848474 CTAGGTGGGGTA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74617787 12 + 122973662 CTAGGTGGGGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30102391 12 + 172585720 CTACATGGGGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29766124 12 - 170955103 CTACATGGGGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2812923 12 -   2996164 CTACATGGGGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     564078 12 +    766320 CTACGTGGGGTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29019884 12 -  71996105 CTACGTGGGGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     202669 12 +    290775 CTACGTGGGGTA
i manLeu1.NW_012099233v1   C 0 I 325
s colAng1.NW_012115566v1    2656061 12 -   3067355 CTACGTGGGATA
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     240513 10 -   1771730 CTAGGTGGGG--
i cebCap1.NW_016107755v1   C 0 C 0
s canFam3.chr35            26244835  9 +  26524999 ---GACGGAGCT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e calJac3.chrUn_GL286223      29173 1722 +    132061 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=423478.000000
s hg38.chr6_GL000254v2_alt   909757 70 +   4827813 ---TCTTCTTTAACTCTACTCCTGCATTAGCTGTTCTAAATCCTAGAACTCATGCCCTGTTTGAAatttcttt
s panTro5.chr6             29872585 70 + 175400573 ---TCTTCTTTAACTCTACTCCTGCATTAGCTGTTCTAAATCCTAGAACTCATGCCCTGTTTGAAatttcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30107163 70 + 173848474 ---TCTTCTTTAACTCTACTCCTGCATTAGCTGTTCTAAATCCTAGAACTCATGCCCTGTTTGAAatttcttt
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74617799 70 + 122973662 ---TCTTCTTTAATTCTACTCCTTCATTAGCTGTTCTAAATCCTAGAACTCATGCCCTGTTTGAAatttcttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30102403 70 + 172585720 ---TCTTCTTTAATTCTACTCCTGCATTAGCTGTTCTAAATCCTAGAACTTATGCCCTGTTTGAAATTTCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29766136 70 - 170955103 ---TCTTCTTTAATTCTACTCCTGCATTAGCTGTTCTAAATCCTAGAACTTATGCCCTGTTTGAAATTTCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2812935 70 -   2996164 ---TCTTCTTTAATTCTACTCCTGCATTAGCTGTTCTAAATCCTAGAACTTATGCCCTGTTTGAAATTTCTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     564090 70 +    766320 ---TCTTCTTTAATTCTACTCCTGCATTAGCTGTTCTAAATCCTAGAACTTATGCCCTGTTTGAAATTTCTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29019896 70 -  71996105 ---TCTTCTTTAATTCTACTCCTGCATTAGCTGTTCTAAATCCTAGAACTTATGCCCTGTTTGAAATTTCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     203006 70 +    290775 ---TCTTCTTTAATTCTACTCCTGCATTAGCTGTTCTAAATCCTAGAACTTATGCCCTGTTTGAAATTTCTTT
i manLeu1.NW_012099233v1   I 325 C 0
s colAng1.NW_012115566v1    2656073 70 -   3067355 ---TGTTCTTTAATTCTACTCCTGCATTAGCTGTTCTAAATCCTAGAACTTATGCCCTATTTGAAATTTCTTT
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     240523 67 -   1771730 ------TCTTTCATTCTCCTCCTGCGTTAGCTGTTCTAAATCCTAGAACTCATGCCCCGTTTGAAATTTCTTT
i cebCap1.NW_016107755v1   C 0 I 452
s canFam3.chr35            26244844 64 +  26524999 TCCTCCTCTTT-------CTCCTGCGCTAGATGCCCC-AATCCTAGATCTGAGGCCATGCTTGCATTCTCTC-
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e calJac3.chrUn_GL286223      29173 1722 +    132061 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=487175.000000
s hg38.chr6_GL000254v2_alt   909827 100 +   4827813 ccctatgcccaactcaagtgatgccatcctattttctattttccaccatgggaaaaatggaaaataacaggagaaATGTATTAAGAAAGCATTCTTGAAT
s panTro5.chr6             29872655 100 + 175400573 ccctatgcccaactcaagtgatgccatcctattttctattttccaccatgggaaaaatggaaaatagcaggagaaaTGTATTAAGAAAGCATTCTTGAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30107233 100 + 173848474 ccctatgcccaactcaagtgatgccatcctattttctattttccaccatgggaaaaatggaaaatagcaggagaaaTGTATTAAGAAAGCATTCTTGAAT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74617869 100 + 122973662 ccctatgcccaactcgagtgatgccatcctattttctattttccaccatgggaaaaatggaaaatagcaggagaaaTGTATTAAGAAAGGATTCTTGAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30102473 100 + 172585720 CCCTATGCTGAACTCAAGTGATGCCATTCTATTTTCTATTTTCCACTATGGGAAAAATGGAAAACAGCAGGATAAATGTATTAAGAAAGCATTCCTGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29766206 100 - 170955103 CCCTATGCTGAACTCAAGTGATGCCATTCTATTTTCTATTTTCCACTATGGGAAAAATGGAAAACAGCAGGATAAATGTATTAAGAAAGCATTCCTGAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2813005 100 -   2996164 CCCTATGCTGAACTCAAGTGATGCCATTCTATTTTCTATTTTCCACTATGGGAAAAATGGAAAACAGCAGGATAAATGTATTAAGAAAGCATTCCTGAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     564160 100 +    766320 CCCTATGCTGAACTCAAGTGATGCCATTCTATTTTCTATTTCCCACTATGGGAAAAATGGAAAACAGCAGGATAAATGTATTAAGAAAGCATTCCTGAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29019966 100 -  71996105 CCCTATGCTGAACTCAAATGATGCCACTCTATTTTCTATTTTCCACTATGGGAAAAATGGAAAATAGCAAGATAAATGTATTAAGAAAGCATTCCTGAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     203076 100 +    290775 CCCTATGCTGAACTCAAGTGATGCCATTCTATTTTCTATTTCCCACTATGGGAAAAATGGAAAACAGCAGGATAAATGTATTAAGAAAGCATTCCTGAAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2656143 100 -   3067355 CCCTATGCTGAACTCAAGTGATGCCATTCTATTTTCTATTTTCCACTATGGGAAAAATGGAAAATAGCAGGATAAATGTATTAAGAAAGCATTCCTGAAT
i colAng1.NW_012115566v1   C 0 C 0
s canFam3.chr35            26244908  81 +  26524999 CCTTAAACCCAACCCGACTGAAGCCAT-------------------GGTGGGGAAATTGTCCAATGATACGGGTAAAACAGGAAGCAAGTGTCCTTGACT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e cebCap1.NW_016107755v1     240590 452 -   1771730 I
e calJac3.chrUn_GL286223      29173 1722 +    132061 I
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=29528.000000
s hg38.chr6_GL000254v2_alt   909927 18 +   4827813 TTGAGTTTGTTAAC-----tttt
s panTro5.chr6             29872755 23 + 175400573 TTGAGTTTGTTAACttttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30107333 19 + 173848474 TTGAGTTTGTTAAC----ttttt
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74617969 14 + 122973662 TTGAGTTTGTTAAC---------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30102573 16 + 172585720 TTGAGT---TTCAC----ttttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29766306 15 - 170955103 TTGAGT---TTCAC-----tttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2813105 16 -   2996164 TTGAGT---TTCAC----ttttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     564260 14 +    766320 TTGAGT---TTAAC------ttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29020066 18 -  71996105 TTGAGT---TTAAC--ttttttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     203176 14 +    290775 TTGAGT---TTAAC------ttt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2656243 13 -   3067355 TTGAGT---TTAAC-------tt
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244989  0 +  26524999 C
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e cebCap1.NW_016107755v1     240590 452 -   1771730 I
e calJac3.chrUn_GL286223      29173 1722 +    132061 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=1661416.000000
s hg38.chr6_GL000254v2_alt   909945 303 +   4827813 tttttttttttaac--agtcttgctctgtcacccaggctggagtgcagtggtgcaagcttggctcactgcaatctccacctcctgggcttaagcaattcttgtgcctctgccacctgagtagttgggattataggcatgcaccaccacgcccagctaatttttgtaattttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatcctcccacctcggcctcccaaagtgctgggattacaagcataagccaccacccccggccTGAATTTGTTAACT
s panTro5.chr6             29872778 303 + 175400573 tttttttttttaac--agtcttgctctgtcacccaggctggagtgcagtggtgcgagcttggctcactgcaatctccacctcccgggtttaagcaattcttgtgcctctgccacctgagtagttgggattataggcatgcaccaccacgcacagctaatttttgtaattttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatcctcccacctcggcctcccaaagtgctgggattacaagcataagccaccacccccggccTGAATTTGTTAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30107352 303 + 173848474 tttttttttttaac--agtcttgctctgtcacccaggctggagtgcagtggtgcaagcttggctcactgcaatctccacctcccgggtttaagcaattcttgtgcctctgccacctgagtagttgggattataggcatgcaccaccacgtacagctaatttttgtaattttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatcctcccacctcggactcccaaagtgctgggattacaagcataagccaccacccccggccTGAATTTGTTAACT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74617983 303 + 122973662 ttttttttttaaac--agtcttgctctgtcacccaggctggagtgcaatggtgcaagcttggctcactgcaatctccacctcctgggtttaagcaattcttgtgcctcagccacctgaatagttgggattataggcaaccaccaccatgcccagctaatttttgtacttttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgaccctcccacctcagcctcccaaagtgctgggattacaagcataagccaccgcccccagccTGAATTTGTTAACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30102589 302 + 172585720 ttttttttttttaa--agtcttgttctgtcacccaggctggagtgtagtggtgcaagcttggctcactgcaatttctgcctccaaggtttaagcaattcttgtgcctcggctacctgagtagttgggattataggcgtgcaccaccacacctggctaa-ttttgttcttttagtggagatggggtttcaccatgttggccaggctggtctagaactcctgacctcaagtgatcctcccacctcagcctcccaaagtgctgggattacaggcataagccaccacccccggccTGAATTTGTTAACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29766321 302 - 170955103 ttttttttttttaa--agtcttgttctgtcacccaggctggagtgtagtggtgcaagcttggctcactgcaatttctgcctccaaggtttaagcaattcttgtgcctcggctacctgagtagttgggattataggcgtgcaccaccacacctggctaa-ttttgttcttttagtggagatggggtttcaccatgttggccaggctggtctagaactcctgacctcaagtgatcctcccacctcagcctcccaaagtgctgggattacaggcataagccaccacccccggccTGAATTTGTTAACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2813121 301 -   2996164 ttttttttttttaa--agtcttgttctgtcacccaggctggagtgtagtggtgcaagcttggctcactgcaatttctgcctccaaggtttaagcaattcttgtgcctcggctacctgagtagttgggattataggcgtgcaccaccacacctggctaa-ttttgttcttttagtggagatggggtttcaccatgttggccaggctggtctagaactcctgacctcaagtgatcctcccacctcagcctcccaaagtgctgggattacaggcataagccacca-ccccggccTGAATTTGTTAACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     564274 302 +    766320 ttttttttttaaac--agtcttgttctgtcaaccaggctggagtgtagtggtacaagcttggctcactgcaatttctgcctccaaggtttaagcaattcttgtgcctcagctacctgagtagttgggattataggtgtgcactaccacgcctggctaa-ttttgttcttttagtggagatggggtttcaccatgttggccaggctggtctagaactcctgacctcaagtgatcctcccacctcagcctcccaaaatgctgggattacaggcataagccaccacccccggccTGAATTTGTTAACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29020084 299 -  71996105 ttttttttttaaag--agtcttgttctgtcacccaggctgaagt---ggggtgcaagcttggctcactgcaatttctgcctcccgggtttaagcaattcttgtgcctcagctacctgagtagttgggattataggcgtacaccaccacacccggctaa-ttttgttcttttagtggaaatggggtttcaccatgttggccaggctggtctagaactcctgacctcaagtgatcctcccacctcagcctcccaaagtgctgggattacaggcataagccacaacccccggccTGAATTTGTTAACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     203190 302 +    290775 ttttttttttaaac--agtcttgttctgtcaaccaggctggagtgtagtggtacaagcttggctcactgcaatttctgcctccaaggtttaagcaattcttgtgcctcagctacctgagtagttgggattataggtgtgcactaccacgcctggctaa-ttttgttcttttagtggagatggggtttcaccatgttggccaggctggtctagaactcctgacctcaagtgatcctcccacctcagcctcccaaaatgctgggattacaggcataagccaccacccccggccTGAATTTGTTAACT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2656256 302 -   3067355 tttttttttttaac--agtcttgttctatcacccaggctggagtgtagtggtgcaagcttggctcactgcaatttctgcctccaaggtttaagcaattcttgtgcctcagctacctgagtagttgggattataggcgtacaacaccacgcctggctaa-ttttgttcttttagtggagatggggtttcaccatgttggccaggctggtctagaacccctgacctcaagtgatcctcccacctcagcctcccaaagtgctgggattacagatataagccaccacccccggccCGAATTTGTTAACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      30895 305 +    132061 ttttttttttagacagagtcttgccctgtcacccaagctggagtgcagtggcacaagcttggctcactgcaacctccacctcccaggttcaaacaattcttgtgcctcagccacctgagcagttggaattacaggcatacaccaccacgtccagctaatttttgtatttttagtagagataagttttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatcctcccaccttggcctcccaaagtgctgggattacaggcataaaccaccgcccctggTGTGAATTTGTTAACT
i calJac3.chrUn_GL286223   I 1722 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26244989   0 +  26524999 C
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e cebCap1.NW_016107755v1     240590 452 -   1771730 I
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=1108838.000000
s hg38.chr6_GL000254v2_alt   910248 176 +   4827813 TCTTACCAACATTTTACAAAGAAGATTGAAGGTAATGTGGGTTCTA-------------AGACTGAAGAGTACAAGGTAAGCTGGTGGTTAatg--gggaggagggatgatggatgaactggtcagggaagaggatgaAATGGCTCAAAATAGAGGTACAAATAGAATGGGCTGGGCTCCTCCAACCATTC
s panTro5.chr6             29873081 176 + 175400573 TCTTACCAACATTTTACAAAGAAGATTGAAGGTAATGTGGGTTCTA-------------AGACTGAAGAGTACAAGGTAAGCTGGTGGTTAatg--gggaggagggatgatggatgaactggtcagggaagaggatgaAATGGCTCAAAATAGAGGTACAAATAGAATGGGCTGGGCTCCTCCAACCATTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30107655 176 + 173848474 TCTTACCAACATTTTACAAAGAAGATTGAAGGTAATGTGGGTTCTA-------------AGACTGAAGAGTACAAGGTAAGCTGGTGGTTAatg--gggaggagggatgatggatgaactggtcagggaagaggatgaAATGGCTCAAAATAGAGGTACAAATAGAATGGGCTGGGCTCCTCCAACCATTC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74618286 176 + 122973662 TCTTACCAACATTTTACAAAGAAGATTGAAGGTAATGTGGGTTCTA-------------AGACTGAAGAGTACAAGGTAAGCTGGTGGTTAatg--gggaggagggatgatggatgaactgatcagggaagcggatgaAATGGCTCAAAATAGAGGTACAAATAGAATGGACTGGGCTCCTCCAACAATTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30102891 176 + 172585720 TCTTACCAACATTTTACAAAGAAGATTGAAGGTAATGTGGGTTCTA-------------AGACTGAAGAGTAAAAGGTAAGCTGGTGGTTAatg--gggaggagggatgatggatgaactggtcagggaagaggatgaAATGGCTCAAAATAGAGGCACAAATAGAATGGGCTGGGCTCCTCCAACCATTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29766623 176 - 170955103 TCTTACCAACATTTTACAAAGAAGATTGAAGGTAATGTGGGTTCTA-------------AGACTGAAGAGTAAAAGGTAAGCTGGTGGTTAatg--gggaggagggatgatggatgaactggtcagggaagaggatgaAATGGCTCAAAATAAAGGCACAAATAGAATGGGCTGGGCTCCTCCAaccattc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2813422 176 -   2996164 TCTTACCAACATTTTACAAAGAAGATTGAAGGTAATGTGGGTTCTA-------------AGACTGAAGAGTAAAAGGTAAGCTGGTGGTTAatg--gggaggagggatgatggatgaactggtcagggaagaggatgaAATGGCTCAAAATAAAGGCACAAATAGAATGGGCTGGGCTCCTCCAACCATTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     564576 176 +    766320 TCTTACCAACATTTTACAAAGAAGATTGAAGGTAATGTGGGTTCTA-------------AGACTGAAGAGTACAAGGTAAGCTGGTGGTTAatg--gggaggagggatgatggatgaactggtcagggaagaggatgaAATGGCTCAAAATAGAGGCACAAATAGAATGGGCTGGGCTCCTCCAACCATTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29020383 176 -  71996105 TCTTACCAACATTTTACAAAGAAGATTGAAGGTAATGTGGGTTCTA-------------AGACTGAAGAGTACAAGGTAAGCTGGTGGTTAatg--gggaggagggatgatggatgaactggtcagggaagaggatgaAATGGCTCAAAATAGAGGCACAAATAGAATGGGCTGGGCTCCTCCAaccattc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     203492 176 +    290775 TCTTACCAACATTTTACAAAGAAGATTGAAGGTAATGTGGGTTCTA-------------AGACTGAAGAGTACAAGGTAAGCTGGTGGTTAatg--gggaggagggatgatggatgaactggtcagggaagaggatgaAATGGCTCAAAATAGAGGCACAAATAGAATGGGCTGGGCTCCTCCAACCATTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2656558 176 -   3067355 TCTTACCAACATTTTACAAAGAAGATTGAAGGTAATGTGGGTTCTA-------------AGACTGAAGAGTACAAGGTAAGCTGGTGGTTAATG--GGGAGGAGGGATGATGGATGAACTGGTCAGGGAAGAGAATGAAATGGCTCAAAATAGAGGCACAAATAGAATGGGCTGGGCTCCTACAACCATTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      31200 176 +    132061 TATTACCCACATTTTACAAAGAGTATTGAAGGTAATGTGGGTTCTA-------------AGACTGAAGAGTACAAGGTAAGCTGGCGATTAATG--GACAGGAGGAATGATGGATGAGCTGGTTGGGGGAGAGGATGAAATGGCTCAAAATAGAGGCACAGCTAGAATGGGTTGCACTCCTCCAACCATTC
i calJac3.chrUn_GL286223   C 0 C 0
s canFam3.chr35            26244989 173 +  26524999 TCTTACCAACATCTTACCAAGGGAATTG-GGGTCACATGGCTTCTACTCTTGGGGCCTTAGGAGGAATAATGCAAACTAC-CTGGCTGTTAATGTTGGCAGCA-------------AAGTGTTCAGAGGGGAGGACAAAACAGCTCAA---AGAGCCACAACGAGAAGGGGCTGGGCTCCTACGACCATTC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e cebCap1.NW_016107755v1     240590 452 -   1771730 I
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=130781.000000
s hg38.chr6_GL000254v2_alt   910424 35 +   4827813 CTTGTGAttttatttttac----------tttttttttttttttt
s panTro5.chr6             29873257 41 + 175400573 CTTGTGATTTTATttttac----tttttttttttttttttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30107831 32 + 173848474 CTTGTGAttttatttttac-------------ttttttttttttt
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74618462 45 + 122973662 CTTGTGATTTTATTTTTACtttttttttttttttttttttttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30103067 34 + 172585720 CTCGTGAttttgtttttac-----------ttttttttttttttt
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29766799 34 - 170955103 ctcgtgattttgtttttac-----------ttttttttttttttt
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2813598 32 -   2996164 CTCGTGAttttgtttttac-------------ttttttttttttt
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012002711v1     564752 32 +    766320 CTCGTGATTTGGttttact-------------ttttttttttttt
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17            29020559 32 -  71996105 ctcgtgattttgtttttac-------------ttttttttttttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     203668 32 +    290775 CTCGTGATTTGGttttact-------------ttttttttttttt
i manLeu1.NW_012099233v1   C 0 M 4645
s colAng1.NW_012115566v1    2656734 28 -   3067355 CTCGTGAttttgtttttac-------------ttttttttt----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      31376 37 +    132061 CTCATGATTATATTTTTGC--------GTGGtttttttttttttt
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26245162  0 +  26524999 C
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e cebCap1.NW_016107755v1     240590 452 -   1771730 I
e gorGor5.CYUI01015250v1    5906743  0 +   6154872 C

a score=229760.000000
s hg38.chr6_GL000254v2_alt   910459 106 +   4827813 ttggtggagtttcactcttgttgcccaggctggagtgcaatggtgcgatctcggctcactgcaacttccacctcctggattcaag-tgagtctcctgcctcagcctt
s panTro5.chr6             29873298 106 + 175400573 ttggtggagtttcactcttgttgcccaggctggagtgcaatggtgcgatctcggctcactgcaacttccacctcctggattcaag-tgattctcctgcctcagcctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30107863 107 + 173848474 ttggtggagtttcactcttgttgcccaggctggagtgcaatggtgcgatctcggctcactgcaacttccacctcctggattcaagttgattctcctgcctcagcctt
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74618507 106 + 122973662 GTGGTggagtttcattcttgttgcccaggctggagtacaatggtgcgatctcggctcactgcaacttccacctcctgggttcaag-tgattctcctgcctcagcctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30103102  68 + 172585720 ttggtagagtttcactcttgttgcccaggcag-----caatggtgcgacctcagctgtctgcaaccgctacct----------------------------------
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29766834  68 - 170955103 ttggtagagtttcactcttgttgcccaggcag-----caatggtgcgacctcagctgtctgcaaccgctacct----------------------------------
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2813631  68 -   2996164 ttggtagagtttcactcttgttgcccaggcag-----caatggtgcgacctcagctgtctgcaaccgctacct----------------------------------
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1     564785  68 +    766320 ttggtggagtttcactcttgttgcccaggcag-----caatggtgcgatctcggctgtctgcaacctctacct----------------------------------
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17            29020591  68 -  71996105 ttggtagagtttcactcttgttgcccaggcag-----caatggtgccatctcagctgtctgcaacctctacct----------------------------------
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2656762  68 -   3067355 ttggtggagtttcactcttgttgcccaggtgg-----caatggtgcgatctcggctgtctgcaacctctacct----------------------------------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      31413  47 +    132061 ttgacggagtttcactcttattgctcaggctggagtgcaatggtacg------------------------------------------------------------
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26245162   0 +  26524999 C
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e cebCap1.NW_016107755v1     240590 452 -   1771730 I
e manLeu1.NW_012099233v1     203700 4645 +    290775 M
e gorGor5.CYUI01015250v1    5906743   0 +   6154872 C

a score=83136.000000
s hg38.chr6_GL000254v2_alt   910565 69 +   4827813 ctgagtagctgggaatgcagatgcgatctcggctcactgcaacttcca---cctgggttcaagtgattctcc
s panTro5.chr6             29873404 69 + 175400573 ctgagtagctgggaatgcaggtgcgatctcggctcactgcaacttcca---cctgggttcaagtgattctcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30107970 69 + 173848474 ctgagtagctgggaatgcaggtgcgatctcggctcactgcaacttcca---cctgggttcaagtgattctcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906743 69 +   6154872 ctgagtagctgggaatgcaggtgtgatctcggctcactgcaacttcca---cctgggttcaagtgattctcc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30103170 21 + 172585720 ---------------------------------------------------cctgggttcaagtgattctcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29766902 21 - 170955103 ---------------------------------------------------cctgggttcaagtgattctcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2813699 21 -   2996164 ---------------------------------------------------cctgggttcaagtgattctcc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     564853 21 +    766320 ---------------------------------------------------cctgggttcaagtgattctcc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29020659 21 -  71996105 ---------------------------------------------------cctgggttcaagtgattctcc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2656830 21 -   3067355 ---------------------------------------------------cctgggttcaagtgattctcc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      31460 45 +    132061 -------------------------aacttggctcactgcaacctccacctcctgggttcaagcggaatt--
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26245162  0 +  26524999 C
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e cebCap1.NW_016107755v1     240590 452 -   1771730 I
e manLeu1.NW_012099233v1     203700 4645 +    290775 M
e nomLeu3.chr1a            74618613  0 + 122973662 C

a score=1995827.000000
s hg38.chr6_GL000254v2_alt   910634 322 +   4827813 tgcctcagccttctgagtagctgggaatgca-ggcgtgtgccaccacacatggctaattttttgtatttttaatagagat-ggggttttgtcatgttgcccaggctggtcttgagctcctgacctcagatgatccgcccacctc-ggcctcccaaagtgctgggattacaggtgtgagccaccgcgcctgacctatttttacttttttaaaagacaggtctcactctattgcccaggctgctcttgaact--cccggcctcaaccaattcttcctgctcagcctcctgagtagttgggactacagCACTCACAACTGTGCCTGACCC
s panTro5.chr6             29873473 322 + 175400573 tgcctcagccttctgagtagctgggaatgca-ggcgtgtgccaccacacatggctaattttttgtatttttaatagagat-ggggtttcgtcatgttgcccaggctggtcttgagctcctgacctcagatgatccgcccacctc-ggcctcccaaagtgctgggatttcaggtgtgagccaccgcacctgacctatttttacttttttaaaagacaggtctcactctattgcccaggctgctcttgaact--cccggcctcaaccaattcttcctgctcagcctcctgagtagttgggactacagCACTCACAACTGTGCCTGACCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30108039 318 + 173848474 tgcctcagccttctgagtagctgggaatgca-ggcgtgtgccaccacacatggctaattttttg-atttttaatagagatgggggtttcgtcatgttgcccaggctggtcttgagctcctgacctcagatgatccg-ccacctc-ggcctcccaaagtgctgggatttcaggtgtgagccaccgcacctgacctatttt---tcttttaaaaagcaggtctcactctattgcccaggctgctcttgaact--cccggcctcaaccaattcttcctgctcagcctcctgagtagttgggactacagCACTCACAACTGTGCCTGACCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5906812 319 +   6154872 tgcctcagccttctgagtagctgggaatgca-ggcgtgtgccaccacacatggctaa-tttttgtatttttaatagagat-gggatttcgtcatgttgcccaggctggtcttgagctcctgacctcagatgatccgcccacctc-ggcctcccaaagtgctgggattacaggtgtgagccaccgcgcctgaccTAtttttactttttt--aagacaggtctcactctattgcccaggctgctcttgaact--cccagcctcaaccaattcttcctgctcagcctcctgagtagttgggactacagcactcacaactgtgcctgacCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74618613 310 + 122973662 ------------ctgagtagctgggaatgca-ggcgtgcaccaccacacacggctaattttttgtatttttagtagagat-ggggtttcgtcgtgttgcccaggctggtcttgagctcctgacctcagatgatccgctcacctc-agcctcccaaagtgctgggattacaggtgtgagccactgcacctggccTACttttacttttttaaaagacaggtcttactctattgcccaggctgctcttgaact--cctggcctccaccaattcttcttgctcagcctcctgggtagttggcactacagcactcacaactgtgcctgaccC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30103191 324 + 172585720 tgcctcagccttctgagtagctgggactgcagggcgtgcaccaccacacacggctaattttttgtatttttagtagagat-ggggattcatcatgttgcccaggctggtctcgagctcctgacctcaggtgatccgcccacctcaaaactcccaaagtactgggtttacaggtgtgagccaccacgcctggccTAtttttacttttttaaaagacaggtctcactctattgcccaggctgctcttgaact--cctggcctcaaccaattctccctgctcagcctcctgagtagttgggactacagcactcacaactgtgcctgacCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29766923 324 - 170955103 tgcctcagccttctgagtagctgggactgcagggcgtgcaccaccacacacggctaattttttgtatttttagtagagat-ggggattcatcatgttgcccaggctggtctcgagctcctgacctcgggtgatccgcccacctcaaaactcccaaagtactgggtttacaggtgtgagccaccacgcctggcctatttttacttttttaaaagacaggtctcactctattgcccaggctgctcttgaact--cctggcctcaaccaattctccctgctcagcctcctgagtagttgggactacagcactcacaactgtgcctgaccC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2813720 323 -   2996164 tgcctcagccttctgagtagctgggactgca-ggcgtgcaccaccacacacggctaattttttgtatttttagtagagat-ggggattcatcatgttgcccaggctggtctcgagctcctgacctcgggtgatccgcccacctcaaaactcccaaagtactgggtttacaggtgtgagccaccacgcctggccTAtttttacttttttaaaagacaggtctcactctattgcccaggctgctcttgaact--cctggcctcaaccaattctccctgctcagcctcctgagtagttgggactacagcactcacaactgtgcctgacCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     564874 324 +    766320 tgcctcagccttctgagtagctgggactgca-ggcgtgcaccgccacacacagctaattttttgtatttttagtagagat-ggggattcgtcatgttgcccaggctggtctcgagctcctgacctcaggtgatccgcccacctc-agcctcccaaagtgctgggtttacaggtgtgagccactgtgcctggccTAtttttacttttttaaaagacaggtctcactctattgcccaggctggtcttgaacttacctggcctcaaccaattctccctgctcagcctcctgagtagttgggactacagcactcacaactgttcctgacCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29020680 322 -  71996105 tgcctcagccttctgagtagctgggactgca-ggcgtgcaccaccacacacagctaattttttgtatttttagtagagat-ggggattcgtcatgttgctcaggctggtctcgagctcctgacctcaggtgatccgcccacctc-agcctcccaaagtactgggtttacaggtgtgagccaccacgccaggcctatttttacttttttaaaagacaggtctcactctattgcccaggctgctcttgaact--cctggcctcaaccaattctccctgctcagcctcctgagtagttgggactacagcactcacaactgtgcctgacCC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2656851 322 -   3067355 tgcctcagccttctgagtagctgggactgca-ggcgtgcaccaccacacacggctaattttttgtatttttagtagagat-ggggattcgtcatgttgctcaggctggtctcgagctcctgacctcaggtgatctgcccacctc-agcctcccaaagtgctgggtttacaggtgtgagccaccgcgcctggACTAtttttacttttttaaaagacaggtctcactctattgcccaggctggtcttgaact--cctggcctcaaccaattctccctgttcagcctcctgagtagttgggactacagcactcacaactgtgcctgATCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      31505 308 +    132061 -gcctcagcctcctgagtagctgagactgca-ggcctgcgccaccaca----gctaattttttgtatttttagtagagat-gggtttttgctctgttgaccaggctggtcttaagctcctgatcttaggtgatccacccgcctt-ggcctcccagagggttcgaattacaggcatgagccaccacacctggccTAtttttacttttttaagagacagatctcactctattgcccaggctggccttgaact--cctggcctcaaccaattctc---------cctcctGAGTAGTTGGGACTATAACACTCATAACTGTGCCTGATCC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     241042 309 -   1771730 tgcctcagcctcctgagtaactgagactgca-ggcgtgcgccaccaca----gctaattttttgtatttttagtagagac-gaggttttgctctgttgaccaggctggtctcaagctcctgatcttaggtgatccacctgcctt-ggcctcccaaagggtttgaattataggcatgagccactgcacctggccTAttttcactttattaaaagacaggtctcactctattgcccaggctggtcttgtagt--ccttgcctcaaccaattctc---------cctcctgagtagttgggactacagcactcacaactatgccTGATCC
i cebCap1.NW_016107755v1   I 452 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26245162   0 +  26524999 C
e otoGar3.GL873550           129033 1053 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e manLeu1.NW_012099233v1     203700 4645 +    290775 M

a score=14976.000000
s hg38.chr6_GL000254v2_alt   910956 2 +   4827813 TT
s panTro5.chr6             29873795 2 + 175400573 TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30108357 2 + 173848474 TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907131 2 +   6154872 TT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74618923 2 + 122973662 TT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30103515 2 + 172585720 TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29767247 2 - 170955103 TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2814043 2 -   2996164 TT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     565198 2 +    766320 TT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29021002 2 -  71996105 TT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2657173 2 -   3067355 TT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      31813 2 +    132061 TT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     241351 2 -   1771730 TT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           130086 2 +  18854210 TC
i otoGar3.GL873550         I 1053 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26245162 0 +  26524999 C
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e manLeu1.NW_012099233v1     203700 4645 +    290775 M

a score=395035.000000
s hg38.chr6_GL000254v2_alt   910958 47 +   4827813 CTCTTAATTTTAACTCCTGAGTGATTTTCTTCTCTGGA-CCCCAAGGA
s panTro5.chr6             29873797 47 + 175400573 CTCTTAATTTTAACTCCTGAGTGATTTTCTTCTCTGGA-CCCCAAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30108359 48 + 173848474 CTCTTAATTTTAACTCCTGAGTGATTTTCTTCTCTGGACCCCCAAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907133 47 +   6154872 CTCTTAATTTTAACTCCTGAGTGATTTTCTTCTCTGGA-CCCCAAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74618925 47 + 122973662 CTCTTAATTTTAACTCCTGAGTGATTTTCTTCTGTGGA-CCCCAAGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30103517 47 + 172585720 CTCTTAATTTTAACTCCTGAGTGATTTTCTTCTCTGGG-CCCCAAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29767249 47 - 170955103 CTCTTAATTTTAACTCCTGAGTGATTTTCTTCTCTGGG-CCCCAAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2814045 47 -   2996164 CTCTTAATTTTAACTCCTGAGTGATTTTCTTCTCTGGG-CCCCAAGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     565200 47 +    766320 CTCTTAGTTTTAACTCCTGAGTGATTTTCTTCTCTGGG-CCCCAAGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29021004 47 -  71996105 CTCTTAGTTTTAACTCCTGAGTGATTTTCTTCTCTGGG-CCCCAAGGG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2657175 47 -   3067355 CTCTTAATTTTAACTCCTGAGTGATTTTCTTCTCTGGG-CCCCAAGAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      31815 47 +    132061 CTCTTAATTTTAACTCCTCAGTGATTTTCTTCTCTGGA-CCCCAAGAG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     241353 47 -   1771730 CTCTTAATTTTAACTCCTCAGTGATTTTCTTCTCTGGG-CCCCAAGAG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           130088 47 +  18854210 CTCTTGATTTTAACTCCTGAGTGATTTCCTTCTCTGGG-TACTGAGGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26245162 47 +  26524999 CCCTTGAGGTTAACTCCTGAATGACTTCCTCCCCTGGG-CATTGAGGA
i canFam3.chr35            C 0 I 2460
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e manLeu1.NW_012099233v1     203700 4645 +    290775 M

a score=134766.000000
s hg38.chr6_GL000254v2_alt   911005 19 +   4827813 GTCATGATATCTCTAAATT
s panTro5.chr6             29873844 19 + 175400573 GTCATGATATCTCTAAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30108407 19 + 173848474 GTCATGATATCTCTAAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907180 19 +   6154872 GTCATGATATCTCTAAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74618972 19 + 122973662 GTCATGATATCTGTAAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30103564 19 + 172585720 GTCACGATATTTCTAAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29767296 19 - 170955103 GTCACGATATTTCTAAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2814092 19 -   2996164 GTCACGATATTTCTAAATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     565247 19 +    766320 GTCACGATATCTCTAAATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29021051 19 -  71996105 GTCACGATATCTCTAAATT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2657222 19 -   3067355 GTCACGATATCTCTAAATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      31862 19 +    132061 GTCATGGTATCTCTAAATT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     241400 19 -   1771730 GTCATGGTATATCTAAATT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           130135 19 +  18854210 ATCATGATATTGTCAAATT
i otoGar3.GL873550         C 0 I 287
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26245209 2460 +  26524999 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e manLeu1.NW_012099233v1     203700 4645 +    290775 M

a score=-2731.000000
s hg38.chr6_GL000254v2_alt   911024 1 +   4827813 A
s panTro5.chr6             29873863 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30108426 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907199 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74618991 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30103583 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29767315 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2814111 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     565266 1 +    766320 A
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29021070 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2657241 1 -   3067355 A
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      31881 1 +    132061 C
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     241419 1 -   1771730 C
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26245209 2460 +  26524999 I
e otoGar3.GL873550           130154 287 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e manLeu1.NW_012099233v1     203700 4645 +    290775 M

a score=274957.000000
s hg38.chr6_GL000254v2_alt   911025 37 +   4827813 TATCCTGAAGTTATTTCAACTTTAGAAAAT--AAAGTTT
s panTro5.chr6             29873864 37 + 175400573 TATCCTGAAGTTATTTCAACTTTAGAAAAT--AAAGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30108427 37 + 173848474 TATCCTGAAGTTATTTCAACTTTagaaaat--aaagttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907200 37 +   6154872 TATCCTGAAGTTATTTCAACTTTAGAAAAT--AAAGTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74618992 39 + 122973662 TATCCTGAAGTTATTTCAGCTTTAGAAAATAAAAAGTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30103584 39 + 172585720 TATCTTGAAGTTATTTCAGCTTTAGAAAATAAAAAGTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29767316 39 - 170955103 TATCTTGAAGTTATTTCAGCTTTAGAAAATAAAAAGTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2814112 39 -   2996164 TATCTTGAAGTTATTTCAGCTTTAGAAAATAAAAAGTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     565267 39 +    766320 TATCTTGAAGTTATTTCAGCTTTAGAAAATAAAAAGTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29021071 39 -  71996105 TATCTCGAAGTTATTTCAGCTTTAGAAAATGAAAAGTTT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2657242 39 -   3067355 TATCTTGAAGTTATTTCAGCTTTAGAAAATAAAAAGTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      31882 39 +    132061 TATCCTGAAGATATTTCAGCTTTAGAAAATAAAAAGTTT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     241420 39 -   1771730 TATCCTGAAGATATTTCAGCTTTAGAAAATAAAAAGTTT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           130441 39 +  18854210 TATCTTGAAGTTATTTTAGCTTTCCAAAATAAGAAGTTT
i otoGar3.GL873550         I 287 I 3229
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26245209 2460 +  26524999 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e manLeu1.NW_012099233v1     203700 4645 +    290775 M

a score=334651.000000
s hg38.chr6_GL000254v2_alt   911062 49 +   4827813 TAggcctggttcagtggctgacacctgtaatcccaatactttgggaggc
s panTro5.chr6             29873901 49 + 175400573 TAggcctggttcagtggctgacacctgtaatcccaatactttgggaggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30108464 49 + 173848474 taggcctggttcagtggctgacacctgtaatcccaatactttgggaggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907237 49 +   6154872 TAggcctggttcagtggctgacacctgtaatcccaatactttgggaggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74619031 49 + 122973662 TAggcctggctcagtggctgacatctgtaatcccaatactttgggaggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30103623 49 + 172585720 TAggcctggctcagtggctgacacctgtaatcccactactttgggaggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29767355 49 - 170955103 TAggcctggctcagtggctgacacctgtaatcccactactttgggaggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2814151 49 -   2996164 TAggcctggctcagtggctgacacctgtaatcccaatactttgggaggc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     565306 49 +    766320 TAggcttggctcagtggctgatacctgtaatcccaatactttgggaggc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29021110 49 -  71996105 TAggcctggctccgtggctgacacctgtaatcccaatactttgggaggc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2657281 49 -   3067355 TAggcctggctcagtggctgacacttgtaatcccaatactttgggagac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      31921 49 +    132061 TAggcctgactcagtggcttacacctgtaatcccagcactttgggaggc
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     241459 49 -   1771730 TAggcctgactcagtggcttacacctgtaatcccagcactttgggaggc
i cebCap1.NW_016107755v1   C 0 I 2125
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26245209 2460 +  26524999 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e manLeu1.NW_012099233v1     203700 4645 +    290775 M

a score=324078.000000
s hg38.chr6_GL000254v2_alt   911111 63 +   4827813 tgaggcaggcagattgcttgagcccaggagtttga---------agctaacatggcaaaa-ccccatctctat
s panTro5.chr6             29873950 63 + 175400573 tgaggcaggcagattgcttgagcccaggagtttga---------agctaacatggcaaaa-ccccatctctat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30108513 63 + 173848474 tgaggcaggcagattgcttgagcccaggagtttga---------agctaacatggcaaaa-ccccatctctat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907286 63 +   6154872 tgaggcaggcagattgcttgagcccaggagtttga---------agctaacatggcaaaa-ccccatctctat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74619080 63 + 122973662 tgaggcaggcagattgcttgagccaaggagtttga---------ggctaacatggcaaaa-ccccatctctat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30103672 63 + 172585720 tgaggcaggcagattgcttgagcctaggagtttga---------ggccaacatggcaaaa-acctgtctctat
i rheMac8.chr4             C 0 I 756
s macFas5.chr4             29767404 63 - 170955103 tgaggcaggcagattgcttgagcctaggagtttga---------ggccaacatggcaaaa-acctgtctctat
i macFas5.chr4             C 0 I 48
s macNem1.NW_012011356v1    2814200 63 -   2996164 tgaggcaggcagattgcttgagcctaggagtttga---------ggccaacatggcaaaa-acctgtctctat
i macNem1.NW_012011356v1   C 0 I 990
s cerAty1.NW_012002711v1     565355 63 +    766320 tgaggcaggcagattgcttgagcccaagaatttga---------ggccaacatggcaaaa-acccgtctctat
i cerAty1.NW_012002711v1   C 0 I 36
s chlSab2.chr17            29021159 63 -  71996105 tgaggcaggcagattgcttgagcccaggagtttga---------ggccaacatggcagaa-acccgtctctat
i chlSab2.chr17            C 0 I 756
s colAng1.NW_012115566v1    2657330 63 -   3067355 tgaggcaggcagattgcttgagcccaggagtttga---------ggccaacatggcaaaa-acccatctctat
i colAng1.NW_012115566v1   C 0 I 36
s calJac3.chrUn_GL286223      31970 71 +    132061 caaagtgggcagatcac--gaggtcaggaatttgagaccagcctggtcaacatggtgaaacccccatctctac
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26245209 2460 +  26524999 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e cebCap1.NW_016107755v1     241508 2125 -   1771730 I
e manLeu1.NW_012099233v1     203700 4645 +    290775 M

a score=-4172.000000
s hg38.chr6_GL000254v2_alt   911174  8 +   4827813 caaaa--aaa
s panTro5.chr6             29874013 10 + 175400573 taaaaagaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30108576 10 + 173848474 taaaaagaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907349  8 +   6154872 taaaa--aaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74619143  8 + 122973662 taaaa--aaa
i nomLeu3.chr1a            C 0 I 315
s macFas5.chr4             29767515  5 - 170955103 -----cgagg
i macFas5.chr4             I 48 I 36
s cerAty1.NW_012002711v1     565454  5 +    766320 -----cgagg
i cerAty1.NW_012002711v1   I 36 I 5
s colAng1.NW_012115566v1    2657429  5 -   3067355 -----caagg
i colAng1.NW_012115566v1   I 36 I 3
s calJac3.chrUn_GL286223      32041  8 +    132061 taaaaata--
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26245209 2460 +  26524999 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e cebCap1.NW_016107755v1     241508 2125 -   1771730 I
e manLeu1.NW_012099233v1     203700 4645 +    290775 M
e chlSab2.chr17            29021222 756 -  71996105 I
e macNem1.NW_012011356v1    2814263 990 -   2996164 I
e rheMac8.chr4             30103735 756 + 172585720 I

a score=2392.000000
s hg38.chr6_GL000254v2_alt   911182 3 +   4827813 -aaa
s panTro5.chr6             29874023 3 + 175400573 -aag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30108586 3 + 173848474 -aag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907357 3 +   6154872 -aaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74619466 3 + 122973662 -aag
i nomLeu3.chr1a            I 315 C 0
s macFas5.chr4             29767556 3 - 170955103 -agg
i macFas5.chr4             I 36 C 0
s cerAty1.NW_012002711v1     565464 3 +    766320 -agg
i cerAty1.NW_012002711v1   I 5 C 0
s colAng1.NW_012115566v1    2657437 3 -   3067355 -aag
i colAng1.NW_012115566v1   I 3 C 0
s calJac3.chrUn_GL286223      32049 3 +    132061 caa-
i calJac3.chrUn_GL286223   C 0 I 2132
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26245209 2460 +  26524999 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e cebCap1.NW_016107755v1     241508 2125 -   1771730 I
e manLeu1.NW_012099233v1     203700 4645 +    290775 M
e chlSab2.chr17            29021222 756 -  71996105 I
e macNem1.NW_012011356v1    2814263 990 -   2996164 I
e rheMac8.chr4             30103735 756 + 172585720 I

a score=12764.000000
s hg38.chr6_GL000254v2_alt   911185 14 +   4827813 aaGAAga----------------agaagaa
s panTro5.chr6             29874026 14 + 175400573 aagaaga----------------agaagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30108589 11 + 173848474 aaGAAGA----------------AGAA---
i panPan2.chr6             C 0 M 295
s gorGor5.CYUI01015250v1    5907360 14 +   6154872 aaaaaAa----------------agaagaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74619469 14 + 122973662 aagaaga----------------agaagaa
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29767559 30 - 170955103 aagaagaggacgatgaggaggggaggagga
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     565467 16 +    766320 aggaaga--------------ggagaagga
i cerAty1.NW_012002711v1   C 0 C 0
s colAng1.NW_012115566v1    2657440 30 -   3067355 aggaggacaacgaggaggagaggaggagga
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26245209 2460 +  26524999 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e cebCap1.NW_016107755v1     241508 2125 -   1771730 I
e calJac3.chrUn_GL286223      32052 2132 +    132061 I
e manLeu1.NW_012099233v1     203700 4645 +    290775 M
e chlSab2.chr17            29021222 756 -  71996105 I
e macNem1.NW_012011356v1    2814263 990 -   2996164 I
e rheMac8.chr4             30103735 756 + 172585720 I

a score=30522.000000
s hg38.chr6_GL000254v2_alt   911199 28 +   4827813 gaagaagaa----------------------------------------------------------aagaaaaaAggctaggcgc
s panTro5.chr6             29874040 86 + 175400573 gaagaagaagaagaagaagaagaagaagaagaagaggaagaggaagaggaagaggaagaagaagaagaagaagaaAggctaggcgc
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907374 25 +   6154872 ---gaagaa----------------------------------------------------------aagaaaaaAggctaggcgc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74619483 28 + 122973662 gaagaagaa----------------------------------------------------------gaGAAAAAAGCCTAggcac
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29767589 28 - 170955103 gaaggagaa----------------------------------------------------------gAGAAAAAAggctgggtgc
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     565483 28 +    766320 gaaggagaa----------------------------------------------------------gagaaaaaAggctaggtgc
i cerAty1.NW_012002711v1   C 0 C 0
s colAng1.NW_012115566v1    2657470 28 -   3067355 gaaggaCAA----------------------------------------------------------GAGAAAAAAggctaggtgt
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26245209 2460 +  26524999 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e cebCap1.NW_016107755v1     241508 2125 -   1771730 I
e calJac3.chrUn_GL286223      32052 2132 +    132061 I
e manLeu1.NW_012099233v1     203700 4645 +    290775 M
e chlSab2.chr17            29021222 756 -  71996105 I
e macNem1.NW_012011356v1    2814263 990 -   2996164 I
e rheMac8.chr4             30103735 756 + 172585720 I
e panPan2.chr6             30108600 295 + 173848474 M

a score=7200.000000
s hg38.chr6_GL000254v2_alt   911227 2 +   4827813 gg
s panTro5.chr6             29874126 2 + 175400573 gg
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907399 2 +   6154872 gg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74619511 2 + 122973662 gg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30104491 2 + 172585720 gg
i rheMac8.chr4             I 756 C 0
s macFas5.chr4             29767617 2 - 170955103 gg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     565511 2 +    766320 gg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29021978 2 -  71996105 gg
i chlSab2.chr17            I 756 C 0
s colAng1.NW_012115566v1    2657498 2 -   3067355 gg
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26245209 2460 +  26524999 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e cebCap1.NW_016107755v1     241508 2125 -   1771730 I
e calJac3.chrUn_GL286223      32052 2132 +    132061 I
e manLeu1.NW_012099233v1     203700 4645 +    290775 M
e macNem1.NW_012011356v1    2814263 990 -   2996164 I
e panPan2.chr6             30108600 295 + 173848474 M

a score=355316.000000
s hg38.chr6_GL000254v2_alt   911229 116 +   4827813 tggctcacacctgtaatcccagcactttgggaggctaaggtgggcagatca--cgaggtcaggagttcgagaacagcctgaccaacatagtg----------------------------------------------------------------------------aaaccctgtctctattaaaaatac--ta
s panTro5.chr6             29874128 116 + 175400573 tggctcacacctgtaatcccagcactttgggaggctaaggtgggcagatca--cgaggtcaggagttcgagaccagcctgaccaacatagtg----------------------------------------------------------------------------aaaccctgtctctattaaaaatac--ta
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907401 116 +   6154872 tggctcacacctgtaatcccagcactttgggaggctaaggtgggcagatca--cggggtcaggagttcgagaccagcctgaccaacatagtg----------------------------------------------------------------------------aaaccctgtctctattaaaaatac--ta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74619513 116 + 122973662 tggctcacacctgtaatcccagcactttgggaggctaaggtgggcagatca--cgaggtcaggagttcaagaccagcctgaccaacatagtg----------------------------------------------------------------------------aaaccccgtctctattaaaaatac--ta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30104493 118 + 172585720 tggctcacacctgtaatcccatcactttgggaggccgaggggagtggatca--cgaggtcaggagatcaagaccatcctggctaacatggtg----------------------------------------------------------------------------aaactccgtctctactaaaaatacaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29767619 116 - 170955103 tgactcacacctgtaatcccagcactttgggaggctaaggtgggcagatca--ccaagtcaggagtttgagaccagcctgaccaacatagtg----------------------------------------------------------------------------aaaccccatctctattaaaaatac--ca
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     565513 116 +    766320 tgactcacacctgtaatcccagcactttgggaggctaaggtgggaagatca--cgaagtcaggagtttgagaccagcctgaccaacatagtg----------------------------------------------------------------------------aaaccccatctctattaaaaatat--ca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29021980 118 -  71996105 tggctcacacctgtaatcccatcactttgggaggccgaggggagtggatca--cgaggtcaggagatcaagaccatcctggctaacatggtg----------------------------------------------------------------------------aaactccgtctctactaaaaatacaaaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2657500 115 -   3067355 tgactcacacctgtaatcccagcactttgggagtat-aggtgagcagatca--cgaagtcaggactttgaaaccagcctgatcaacatagtg----------------------------------------------------------------------------aaaccccatctctattaaaaatac--ca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      34184 194 +    132061 tggcttatgcctgtaatcccagcactttgggaggccatggcagaaggactgattgatcccaggagtttgagaccagcttgggcaacacagtgagatcctgtctctaaaactgaaacaaaaaCATGAGGTCTGCTCAGAAAGAGAAAAACAATActgagcagcatggcaaaaccctgtctcttcaaaaaatac--aa
i calJac3.chrUn_GL286223   I 2132 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26245209 2460 +  26524999 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e cebCap1.NW_016107755v1     241508 2125 -   1771730 I
e manLeu1.NW_012099233v1     203700 4645 +    290775 M
e macNem1.NW_012011356v1    2814263 990 -   2996164 I
e panPan2.chr6             30108600 295 + 173848474 M

a score=589044.000000
s hg38.chr6_GL000254v2_alt   911345 159 +   4827813 aaattagccaggtgtggtggtggacacctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaaccggagaggcagaggttgcagtaagctgagtttgcgccattgctctccagcctgggtg-acagagtgagacaccatctc--------------------aaataaa
s panTro5.chr6             29874244 165 + 175400573 aaattagccaggtgtggtggtggacacctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaaccggagaggcagaggttgcagtaagctgagtttgcgccattgctctccagcctgggtg-acagagtgagacaccatctcaa--------------aaaaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30108895 161 + 173848474 aaattagccaggtgtggtggtggacacctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaaccggagaggcagaggttgcagtaagctgagtttgcgccattgctctccagcctgggtg-acagagtgagacaccatctc------------------aaaaaaaaa
i panPan2.chr6             M 295 C 0
s gorGor5.CYUI01015250v1    5907517 160 +   6154872 aaattagccaggtgtggtggtggacacctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaactggagaggcagaggttgcagtaagctgagtttgcgccattgctctccagcctgggtg-acagagtgagacaccatctc-------------------aaaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74619629 158 + 122973662 aaattagccaggtgtggtggtggacacctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaaccggagaggtggaggttgcagtaagccgagttcgtgccattgctctccaggctgggca-acagagcaagacaccatctc---------------------aaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30104611 159 + 172585720 aaattagctgggcgtggtggcgggcgtctgtagtcccagttactcggaaggctgaggcagaagaatggcgtgaacccaggaggcggagcttgcagtgagtcgagatcacgccactgcactccagcctggccc-acagagcgagactccatctc--------------------aaaaaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29767735 159 - 170955103 aaattagccaggtgtggtagtggacacctgtcatcccaactactcaggaggctgaggcaggagaatcgcttgaaccacagagttggaggttgcagtgagccgagttcacgccattgctctccagcctaggcg-acagagcgagacgccatctt--------------------gagaaaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     565629 159 +    766320 aaattaaccaggtgtggtggtggacacctgtcatcccagctactcaggaggctgaggcaggagaatcgcttgaaccagagagctggaggttgcagtgagccaagttcacgccattactctccagcctaggtg-acagagagagatgccatctc--------------------aaggaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29022098 159 -  71996105 aaattagctgggcgtggtggcgggcgtctgtagtcccagttacttggaaggctgaggcagaagaatggcgtgaacccaggaggcggagcttgcagtgagtccagatcaggccactgcactccagcctgggcc-acagagcgagactccttctc--------------------aaaaaca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2657615 158 -   3067355 aaattagccaggtgtggtggtggacacctgtcatcccagctactcaggaggctgaggcaggagaatcacttgaaccagagagttggaggttgctgtgagccaagttca-gccattgctctccagcctaggtg-acagagtgagacaccatctc--------------------aaggaaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      34378 179 +    132061 aaattagctgggcatagtgatgcatgcctgtagtcctagctactcaggaagttgaggtgggagga-cgcttgagcctgggaagcagaggttgcagtgagccgagatcttaccactgcattccaatccgagtgaaaagagtgagaccctgtccccaccccatcactcccccgcaaaaaaaa
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26245209 2460 +  26524999 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e cebCap1.NW_016107755v1     241508 2125 -   1771730 I
e manLeu1.NW_012099233v1     203700 4645 +    290775 M
e macNem1.NW_012011356v1    2814263 990 -   2996164 I

a score=19415.000000
s hg38.chr6_GL000254v2_alt   911504 4 +   4827813 aaag
s panTro5.chr6             29874409 4 + 175400573 aaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109056 4 + 173848474 aaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907677 4 +   6154872 aaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74619787 4 + 122973662 aaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30104770 4 + 172585720 aaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29767894 4 - 170955103 aaaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     565788 4 +    766320 aaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29022257 4 -  71996105 aaaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2657773 4 -   3067355 aaaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      34557 4 +    132061 aaaa
i calJac3.chrUn_GL286223   C 0 I 1
s canFam3.chr35            26247669 4 +  26524999 AGAA
i canFam3.chr35            I 2460 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e aotNan1.NW_018509740v1     321366 6939 -    457564 M
e cebCap1.NW_016107755v1     241508 2125 -   1771730 I
e manLeu1.NW_012099233v1     203700 4645 +    290775 M
e macNem1.NW_012011356v1    2814263 990 -   2996164 I

a score=18297.000000
s hg38.chr6_GL000254v2_alt   911508 8 +   4827813 aaaagaaa
s panTro5.chr6             29874413 8 + 175400573 aaaagaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109060 8 + 173848474 agaaagaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907681 8 +   6154872 aaaagaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74619791 8 + 122973662 aaaagaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30104774 8 + 172585720 caaaaaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29767898 2 - 170955103 aa------
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     565792 8 +    766320 aaaaaaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29022261 8 -  71996105 caaaaaca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2657777 8 -   3067355 aaaaaaaa
i colAng1.NW_012115566v1   C 0 I 319
s calJac3.chrUn_GL286223      34562 8 +    132061 aaaaaaga
i calJac3.chrUn_GL286223   I 1 C 0
s aotNan1.NW_018509740v1     328425 6 -    457564 --aaaaga
i aotNan1.NW_018509740v1   M 6939 C 0
s canFam3.chr35            26247673 8 +  26524999 AAGTGAAA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e cebCap1.NW_016107755v1     241508 2125 -   1771730 I
e manLeu1.NW_012099233v1     203700 4645 +    290775 M
e macNem1.NW_012011356v1    2814263 990 -   2996164 I

a score=4500.000000
s hg38.chr6_GL000254v2_alt   911516 2 +   4827813 aa-
s panTro5.chr6             29874421 2 + 175400573 aa-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109068 2 + 173848474 aa-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907689 2 +   6154872 aa-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74619799 2 + 122973662 aa-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30104782 2 + 172585720 aa-
i rheMac8.chr4             C 0 I 15
s cerAty1.NW_012002711v1     565800 2 +    766320 aa-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29022269 2 -  71996105 aa-
i chlSab2.chr17            C 0 I 15
s calJac3.chrUn_GL286223      34570 2 +    132061 aa-
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     328431 2 -    457564 aa-
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26247681 2 +  26524999 -AC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e cebCap1.NW_016107755v1     241508 2125 -   1771730 I
e colAng1.NW_012115566v1    2657785 319 -   3067355 I
e manLeu1.NW_012099233v1     203700 4645 +    290775 M
e macNem1.NW_012011356v1    2814263 990 -   2996164 I
e macFas5.chr4             29767900 0 - 170955103 C

a score=8281.000000
s hg38.chr6_GL000254v2_alt   911518 1 +   4827813 a
s panTro5.chr6             29874423 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109070 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907691 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74619801 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30104799 1 + 172585720 a
i rheMac8.chr4             I 15 C 0
s macFas5.chr4             29767900 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2815253 1 -   2996164 a
i macNem1.NW_012011356v1   I 990 C 0
s cerAty1.NW_012002711v1     565802 1 +    766320 a
i cerAty1.NW_012002711v1   C 0 I 316
s chlSab2.chr17            29022286 1 -  71996105 a
i chlSab2.chr17            I 15 C 0
s colAng1.NW_012115566v1    2658104 1 -   3067355 a
i colAng1.NW_012115566v1   I 319 C 0
s calJac3.chrUn_GL286223      34572 1 +    132061 a
i calJac3.chrUn_GL286223   C 0 I 3
s aotNan1.NW_018509740v1     328433 1 -    457564 a
i aotNan1.NW_018509740v1   C 0 I 3
s canFam3.chr35            26247683 1 +  26524999 A
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e cebCap1.NW_016107755v1     241508 2125 -   1771730 I
e manLeu1.NW_012099233v1     203700 4645 +    290775 M

a score=22401.000000
s hg38.chr6_GL000254v2_alt   911519 3 +   4827813 aaG
s panTro5.chr6             29874424 3 + 175400573 aaG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109071 3 + 173848474 aaG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907692 3 +   6154872 aaG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74619802 3 + 122973662 aaG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30104800 3 + 172585720 aaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29767901 3 - 170955103 aaG
i macFas5.chr4             C 0 I 628
s macNem1.NW_012011356v1    2815254 3 -   2996164 aaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     566119 3 +    766320 AAA
i cerAty1.NW_012002711v1   I 316 C 0
s chlSab2.chr17            29022287 3 -  71996105 aaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2658105 3 -   3067355 aaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      34576 3 +    132061 AAG
i calJac3.chrUn_GL286223   I 3 C 0
s cebCap1.NW_016107755v1     243633 3 -   1771730 AAG
i cebCap1.NW_016107755v1   I 2125 C 0
s aotNan1.NW_018509740v1     328437 3 -    457564 aaG
i aotNan1.NW_018509740v1   I 3 C 0
s canFam3.chr35            26247684 3 +  26524999 AAA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e manLeu1.NW_012099233v1     203700 4645 +    290775 M

a score=491867.000000
s hg38.chr6_GL000254v2_alt   911522 62 +   4827813 ATCTTGGAATGCTTTTTTTCTGCCTGTGTATTGATATTATTCTTAAGGGGC-TCATAAGAAAA
s panTro5.chr6             29874427 62 + 175400573 ATCTTGGAATGCTTTTTTTCTGCCTGTGTATTGATATTATTCTTAAGGGGC-TCATAAGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109074 62 + 173848474 ATCTTGGAATG-TTTTTTTCTGCCTGTGTATTGATATTATTCTTAAGGGGCGTCATAAGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907695 62 +   6154872 ATCTTGGAATGCTTTTTTTCTGCCCGTGTATTGATATTATTCTTAAGGGGC-TCATAAGAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74619805 62 + 122973662 ATCTTGGAATGCTTTTTTTCTGCCTGTGTATTGATATTATTCTTAAGGGGC-TCTTAAGAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30104803 62 + 172585720 aTCTTGGAATGCTTTTTTTCTCCCTGTGTATTGATATTATTCTTAAGGGGC-TCATAAGAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29768532 62 - 170955103 aTCTTGGAATGCTTTTTTTCTCCCTGTGTATTGATATTATTCTTAAGGGGC-TCATAAGAAAA
i macFas5.chr4             I 628 C 0
s macNem1.NW_012011356v1    2815257 62 -   2996164 aTCTTGGAATGCTTTTTTTCTCCCTGTGTATTGATATTATTCTTAAGGGGC-TCATAAGAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     566122 62 +    766320 ATCTTGAAATGCTTTTTTTCTGCCTGTGTATTGATATTATTCTTAAGGGGC-TCATAAGAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29022290 62 -  71996105 aTCTTGGAATGCTTTTTTTCTGCCTGTGTATTGATATTATTCTTAAGGGGC-TCATAAGAAAA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2658108 62 -   3067355 aTCTTAGAATGCTTTTTTTCTGCCTGTGTATTGATATTATTCTTAAGGGGC-TCATAAGAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      34579 61 +    132061 ATCTTTTAATG-TTTTTTTCTCCCTGTGTATTGGTATTATTCTTAAGGGGC-TCATAAGAAAA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     243636 61 -   1771730 ATCTTCTAATGCTTTTTTTCTGCCTATATATTGATATTATTCTTAGGGGGC-TCATAAG-AAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     328440 62 -    457564 ATCTTCTAATGCTTTTTTTCTCCCTATATGTTGATATTATTCTTAAGGGGC-TCATAAGAAAA
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26247687 59 +  26524999 GATTCAGAATG---TTTTCATACCGATGTGTTGACATTGTTGGTAAGTGGC-TCCTAAGAAAA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e manLeu1.NW_012099233v1     203700 4645 +    290775 M

a score=76489.000000
s hg38.chr6_GL000254v2_alt   911584 12 +   4827813 Ctaaat--atatat
s panTro5.chr6             29874489 12 + 175400573 Ctaaat--atatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109136 12 + 173848474 Ctaaat--atatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907757 12 +   6154872 Ctaaat--atatat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74619867 14 + 122973662 ATAAATACatatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30104865 12 + 172585720 ataaat--atatat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29768594 12 - 170955103 ataaat--atatat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2815319 12 -   2996164 ataaat--atatat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     566184 12 +    766320 ATAAat--atatgt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29022352 12 -  71996105 ataaat--atatat
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2658170 12 -   3067355 ataaat--atatat
i colAng1.NW_012115566v1   C 0 I 2
s calJac3.chrUn_GL286223      34640 12 +    132061 ACGAat--gtatat
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     243697 12 -   1771730 ataaat--gtatat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     328502 12 -    457564 ataaat--gtatat
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26247746  0 +  26524999 C
e otoGar3.GL873550           130480 3229 +  18854210 I
e manLeu1.NW_012099233v1     203700 4645 +    290775 M

a score=2266836.000000
s hg38.chr6_GL000254v2_alt   911596 280 +   4827813 atttac------------------------------------------------atatatatatatatataAAA-----tcacccaggttggagtgcagcggtgcaatctcagctcactgcaatatctgcctccagggttcaagcaattcttttgcctcagcctccccagtagctaggatttcaggcatgcaccaccatgcctggctaatttttgtatttgaagtagagacagggtttcgccatgttggccaggctggttttgaactctggacctcaaatgaccctcctgcct---------aaagtactgggattacaggggtgagccaccatgcctggcc
s panTro5.chr6             29874501 278 + 175400573 atttac--------------------------------------------------atatatatatatataAAA-----tcacccagcttggagtgcagcggtgcaatcccagctcactgcaatatctgcctccagggttcaagcaattcttttgcctcagcctccccagtagctaggatttcaggcatgcaccaccatgcctggctaatttttgtatttgaagtagagacagggtttcaccatgttggccaggctggttttgaactctggacatcaaatgaccctcctgcct---------aaagtactgggattacaggggtgagccaccatgcctggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109148 278 + 173848474 atttac--------------------------------------------------atatatatatatataAAA-----tcacccagcttggagtgcagcggtgcaatcccagctcactgcaatatctgcctccagggttcaagcaattcttttgcctcagcctccccagtagctaggatttcaggcatgcaccaccatgcctggctaatttttgtatttgaagtagagacagggtttcaccatgttggccaggctggttttgaactctggacctcaaatgaccctcctgcct---------aaagtactgggattacaggggtgagccaccatgcctggcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5907769 278 +   6154872 atttac--------------------------------------------------atatatatatatatataA-----tcacccaggttggagtgcagcggtgcaatctcagctcactgcaatatctgccgccagggttcaagcaattcttttgcctcagcctccccagtagctaggatttcaggcatgcaccaccatgcctggctaatttttgtatttgaagtagagacagggtttcaccatgttggccaggctggttttgaactctggacctcaaatgaccctcctgcat---------aaagtactgggattacaggggtgagccaccatgcctggcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74619881 306 + 122973662 atttacatatatatatatgtgtgtgtatatat----------------------atatatatatatatataAAA-----tcacccaggttggagtgcagtggtgcaatctcagctcactgcaatatctgcctccagggttcaagcaattcttttgcctcagcctccccagtagctaggattacaggcgtgcaccaccatgcctggctaatttttgtatttgaagtagagacagggtttcgccatgttggccaggctggttttgaactctggacctcaagtgaccctcctgcct---------aaagtactgggattacaggggtgagccaccatgcctggcc
i nomLeu3.chr1a            C 0 M 1194
s rheMac8.chr4             30104877 275 + 172585720 atttac--------------------------------------------------atatatatacatata--------tcacccaggttggagtgcactggtgcgatctcagctcactgcaatatctgcctccagggttcaagcaattcttgtgcctcagccttcccagtagctaggattataggcgtgcaccaccatgcctggctaagttttgtatttgaagtagagacggggtttccccatgttggcaaggctggttttgaactctggacctcaagtgaccctcccgcct---------aaaatactgggattacaggggtgagccaccatgcctggtc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29768606 275 - 170955103 atttac--------------------------------------------------atatatatacatata--------tcacccaggttggagtgcactggtgcgatctcagctcactgcaatatctgcctccagggttcaagcaattcttgtgcctcagccttcccagtagctaggattttaggcgtgcaccaccatgcctggctaatttttgtatttgaagtagagacggggtttccccatgttggcaaggctggttttgaactctggacctcaagtgaccctcccgcct---------aaaatactgggattacaggggtgagccaccatgcctggtc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2815331 275 -   2996164 atttac--------------------------------------------------atatatatacatata--------tcacccaggttggagtgcactggtgcgatctcagctcactgcaatatctgcctccagggttcaagcaattcttgtgcctcagccttcccagtagctaggattataggcgtgcaccaccatgcctggctaatttttgtatttgaagtagagacggggtttccccatgttggcaaggctggttttgaactctggacctcaagtgaccctcccgcct---------aaaatactgggattacaggggtgagccaccatgcctggtc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     566196 285 +    766320 atttac------------------atatatat----------------------atatatatatatatata--------tcacccaggttggagtgcactggtgcaatctcagctcactgcaatatctgcctccagggttcaagcaattcttgtgcctcagcctccccagtagctaggattataggcgtgcaccaccatgcctggctaatttttgtatttgaagtagaaatggagtttcgccatgttggccaggctggttttgaactctggacctcaagtgaccctcccgcct---------aaaatactgggattacaggggtgagccaccatgcctggtc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29022364 275 -  71996105 atttac--------------------------------------------------atatgtatacatata--------tcacccaggttggagtgcactggtgcaatctcagctcactgcaatatctgcctccagggttcaagcaattcttgtgcctcagcctccccagtagctaggattataggcgtgcaccaccatgcctggctaatttttgtatttgaagtggagatgggatttccccatgttggcaaggctggttttgaactctggacctcaagtgaccctcccacct---------aaaatactgggattacaggggtgagccaccacgcctggtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     208347 283 +    290775 atttat--------------------------------------------------atatatatatatatatatatctctcacccaggttggagtgcactggtgcaatctcagctcactgcaatatctgcctccagggttcaagcaattcttgtgcctcagcctccccagtagctaggattataggggtgcaccaccatgcctggctaatttttgtatttgaagtagaaacggagtttcgccatgttggccaggctggttttgaactctggacctcaagtgaccctcccgcct---------aaaatactgggattacaggggtgagccaccatgcctggtc
i manLeu1.NW_012099233v1   M 4645 C 0
s colAng1.NW_012115566v1    2658184 262 -   3067355 atttac--------------------------------------------------atatat----atata--------tcacccaggttggagtgcactggtgcaatcttagctcactgcaatatctgcctccagggttcaagcaattcttgtgcctcagcctccccagtagctaggattataggtgtgcaccaccatgcctggctaatttttgtatttgaagtagagacggagtttcgccatgt---------tggttttgaactctggacctcaagtgaccctcccgcct---------aaaatactgggattacaggggtgagccaccatgcctggtc
i colAng1.NW_012115566v1   I 2 C 0
s calJac3.chrUn_GL286223      34652 330 +    132061 atgtatatatacgtgtgtgtatatatatgtgtgt----atatgtgagtgtatacatatgtgtgtatAGAta--------tcacccaggttggagtgcagtggcacaatctcagctcactgcaatatctgcctcctggattcaagtgattcttgtgcctcagccttcccagtagctaggattacaagcgtgtgccacgatgcctggctaatttttatatctgtagtagaaatggggttttgccatgttggccaggctggttttgaactctgaacctcaagtgatcctcctacctcggccttccgaagtattggaattacaggtgtgagccaccatgcctggcc
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     243709 312 -   1771730 atacacacatatatatgtgtatatatgtgtgt----------------------atatgtgtgtatagata--------tcacccacattggagcgcagtggcacaatctcagctcaccgcaatgtctgcctcctggattcaagtgattcttgtgcctcagcctccccagtagctaggattacaggcgtgtgccaccatgcctggctaatttttgtatttgtagtagaaatggggtttcgccaggtttgccaggctggttttgaactctgaacctcaagtgattctcccacctcggccttccgaagtattggaattacaggtgtgagccaccatgcctggcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     328514 334 -    457564 atatacacatatatatgtgtatatatatatgtgtgtgcatatgtgtgtgtatacatatgtgtgtatagata--------tcacccaggttggagtgcagtggcacaatctcaactcaccgcaatatctgcctcctggattcaagtgattcttgtgcctcagcctccccagtagctaggattacaggcgtgtgccaccatgcctggctaatttttgtatctgtagtagaaacggggtttcaccatgttggccaggctggttttgaactctgaacctcaagtgatcctcccacctcggccttccaaagtattggaattacaggtgtgagccaccatgcctggcc
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26247746   0 +  26524999 C
e otoGar3.GL873550           130480 3229 +  18854210 I

a score=70179.000000
s hg38.chr6_GL000254v2_alt   911876 10 +   4827813 CAGAAAATAT
s panTro5.chr6             29874779 10 + 175400573 CAGAAAATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109426 10 + 173848474 CAGAAAATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908047 10 +   6154872 CAGAAAATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30105152 10 + 172585720 CAGAAAATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29768881 10 - 170955103 CAGAAAATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2815606 10 -   2996164 CAGAAAATAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     566481 10 +    766320 CAGAAAATAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29022639 10 -  71996105 CAGAAAATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     208630 10 +    290775 CAGAAAATAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2658446 10 -   3067355 CAGAAAATAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      34982  7 +    132061 Caaaaaa---
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244021 10 -   1771730 caaaaaatat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     328848 10 -    457564 caaaaaatat
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26247746  0 +  26524999 C
e otoGar3.GL873550           130480 3229 +  18854210 I
e nomLeu3.chr1a            74620187 1194 + 122973662 M

a score=9555.000000
s hg38.chr6_GL000254v2_alt   911886 1 +   4827813 T
s panTro5.chr6             29874789 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109436 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908057 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30105162 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29768891 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2815616 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     566491 1 +    766320 T
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29022649 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     208640 1 +    290775 T
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2658456 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      34989 1 +    132061 t
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244031 1 -   1771730 t
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     328858 1 -    457564 t
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26247746 1 +  26524999 T
i canFam3.chr35            C 0 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            55191 6419 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e nomLeu3.chr1a            74620187 1194 + 122973662 M

a score=207456.000000
s hg38.chr6_GL000254v2_alt   911887 25 +   4827813 ATTGTTATTTAATATGACCTGCCAT
s panTro5.chr6             29874790 25 + 175400573 ATTGTTATTTAATATCACCTGCCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109437 25 + 173848474 ATTGTTATTTAATATCACCTGCCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908058 25 +   6154872 ATTGTTATTTAATATCACCTGCCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30105163 25 + 172585720 ATTGTTATTTAGTATCACCTTCCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29768892 25 - 170955103 ATTGTTATTTAGTATCACCTTCCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2815617 25 -   2996164 ATTGTTATTTAGTATCACCTTCCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     566492 25 +    766320 ATTGTTATTTAGTATCACCTTCCAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29022650 25 -  71996105 ATTGGTATTTAGTATCACCTTCCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     208641 25 +    290775 ATTGTTATTTAGCATCACCTTCCAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2658457 25 -   3067355 ATTGTTATTTAGTATCACCTTCCAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      34990 25 +    132061 attattatttaatatCACCTTCCAT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244032 25 -   1771730 attattatttaatatCACCTTCCAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     328859 25 -    457564 attattatttaatatCACCTTCCAT
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26247747 22 +  26524999 ATTACTGGTTGATAT---CTCCCAT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            61610 25 +    102524 ATTACTGGCTGATATAATCTCCCCT
i dasNov3.JH582591         I 6419 C 0
e micMur3.chr6               140758 2646 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e nomLeu3.chr1a            74620187 1194 + 122973662 M

a score=309351.000000
s hg38.chr6_GL000254v2_alt   911912 30 +   4827813 AACTACCATTAAAAGTAGTACAGGTGTGCA
s panTro5.chr6             29874815 30 + 175400573 AACTACCATTAAAAGTAGTACAGGTGTGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109462 30 + 173848474 AACTACCATTAAAAGTAGTACAGGTGTGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908083 30 +   6154872 AACTACCATTAAAAGTAGTACAGGTGTGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30105188 30 + 172585720 AACTACCATTAAAAATATTACAGGTGTGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29768917 30 - 170955103 AACTACCATTAAAAATATTACAGGTGTGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2815642 30 -   2996164 AACTACCATTAAAAATATTACAGGTGTGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     566517 30 +    766320 AACTACCATTAAAAATATTACAGGTGTGCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29022675 30 -  71996105 AACTACCATTAAAAATATTACAGGTGTGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     208666 30 +    290775 AACTACCATTAAAAATATTACAGGTGTGCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2658482 30 -   3067355 AACTACCATTAAAAATATTACAGGTGTGCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      35015 30 +    132061 AACTACCATTAAAAGTATTACAGGTGTGCA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244057 30 -   1771730 AACTACCATTAAAAGTATTACAGGTGTGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     328884 30 -    457564 AACTACCATTAAAAGTTTTACAAGTATGCA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               143404 30 + 123392446 AACCACCATTAAAAGTATTACAGGTGTGCA
i micMur3.chr6             I 2646 I 22
s canFam3.chr35            26247769 30 +  26524999 AACCATCATTGAAAGTATGACAGGTGTGTA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            61635 26 +    102524 AACCACCGTTAAAAGTGCTGCCCGCA----
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57949304 2992 -  94987271 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e nomLeu3.chr1a            74620187 1194 + 122973662 M

a score=124652.000000
s hg38.chr6_GL000254v2_alt   911942 17 +   4827813 AAAGAAACTTATCTGGC
s panTro5.chr6             29874845 17 + 175400573 AAAGAAACTTATCTGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109492 17 + 173848474 AAAGAAACTTATCTGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908113 17 +   6154872 AAAGAAACTTATCTGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30105218 17 + 172585720 ATAGAAACTGATCTGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29768947 17 - 170955103 ATAGAAACTGATCTGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2815672 17 -   2996164 ATAGAAACTGATCTGGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     566547 17 +    766320 ATAGAAACTTATCTGGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29022705 17 -  71996105 ATAGAAACTGATCTGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     208696 17 +    290775 ATAGAAACTGATCTGGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2658512 17 -   3067355 ATAGAAACTTATCCGGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      35045 17 +    132061 ACAGAAACTTGTCTGGC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244087 17 -   1771730 ACAGAAACTTGTCTGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     328914 17 -    457564 ACAGAAACTTGTCTGGC
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26247799 17 +  26524999 AAGGAAATAAAGTTGGC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            61661  5 +    102524 ------------CAGGC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               143434 22 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e nomLeu3.chr1a            74620187 1194 + 122973662 M

a score=1841.000000
s hg38.chr6_GL000254v2_alt   911959 1 +   4827813 -T
s panTro5.chr6             29874862 1 + 175400573 -T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109509 1 + 173848474 -T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908130 1 +   6154872 -T
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30105235 1 + 172585720 -T
i rheMac8.chr4             C 0 I 6
s macFas5.chr4             29768964 1 - 170955103 -T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2815689 1 -   2996164 -T
i macNem1.NW_012011356v1   C 0 I 6
s cerAty1.NW_012002711v1     566564 1 +    766320 -T
i cerAty1.NW_012002711v1   C 0 I 6
s chlSab2.chr17            29022722 1 -  71996105 -T
i chlSab2.chr17            C 0 I 6
s manLeu1.NW_012099233v1     208713 1 +    290775 -T
i manLeu1.NW_012099233v1   C 0 I 6
s colAng1.NW_012115566v1    2658529 1 -   3067355 -T
i colAng1.NW_012115566v1   C 0 I 6
s cebCap1.NW_016107755v1     244104 1 -   1771730 -T
i cebCap1.NW_016107755v1   C 0 I 5
s aotNan1.NW_018509740v1     328931 1 -    457564 -T
i aotNan1.NW_018509740v1   C 0 I 5
s canFam3.chr35            26247816 1 +  26524999 -T
i canFam3.chr35            C 0 I 37
s dasNov3.JH582591            61666 1 +    102524 G-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               143434 22 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e calJac3.chrUn_GL286223      35062 0 +    132061 C
e nomLeu3.chr1a            74620187 1194 + 122973662 M

a score=1206.000000
s hg38.chr6_GL000254v2_alt   911960 2 +   4827813 AT
s panTro5.chr6             29874863 2 + 175400573 AT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109510 2 + 173848474 AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908131 2 +   6154872 AT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29768965 2 - 170955103 GT
i macFas5.chr4             C 0 I 4
s dasNov3.JH582591            61667 2 +    102524 CT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               143434 22 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26247817 37 +  26524999 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e aotNan1.NW_018509740v1     328932 5 -    457564 I
e cebCap1.NW_016107755v1     244105 5 -   1771730 I
e calJac3.chrUn_GL286223      35062 0 +    132061 C
e colAng1.NW_012115566v1    2658530 6 -   3067355 I
e manLeu1.NW_012099233v1     208714 6 +    290775 I
e chlSab2.chr17            29022723 6 -  71996105 I
e cerAty1.NW_012002711v1     566565 6 +    766320 I
e macNem1.NW_012011356v1    2815690 6 -   2996164 I
e rheMac8.chr4             30105236 6 + 172585720 I
e nomLeu3.chr1a            74620187 1194 + 122973662 M

a score=11010.000000
s hg38.chr6_GL000254v2_alt   911962 12 +   4827813 ggctgggcgcgg
s panTro5.chr6             29874865 12 + 175400573 ggctgggcgcgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109512 12 + 173848474 ggctgggcgcgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908133 12 +   6154872 ggctgggcgcgg
i gorGor5.CYUI01015250v1   C 0 C 0
s dasNov3.JH582591            61669 12 +    102524 GGCTGGCCGCGG
i dasNov3.JH582591         C 0 I 372
e micMur3.chr6               143434 22 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26247817 37 +  26524999 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e aotNan1.NW_018509740v1     328932  5 -    457564 I
e cebCap1.NW_016107755v1     244105  5 -   1771730 I
e calJac3.chrUn_GL286223      35062  0 +    132061 C
e colAng1.NW_012115566v1    2658530  6 -   3067355 I
e manLeu1.NW_012099233v1     208714  6 +    290775 I
e chlSab2.chr17            29022723  6 -  71996105 I
e cerAty1.NW_012002711v1     566565  6 +    766320 I
e macNem1.NW_012011356v1    2815690  6 -   2996164 I
e macFas5.chr4             29768967  4 - 170955103 I
e rheMac8.chr4             30105236  6 + 172585720 I
e nomLeu3.chr1a            74620187 1194 + 122973662 M

a score=107503.000000
s hg38.chr6_GL000254v2_alt   911974 194 +   4827813 tgctcacgcctgtaatcccagcactttgggaggctgaggcagactgataatgaggtcaggagatcaagaccatcctggctaacatggtgaaaccctgtctctacaaaatatacaagaaaaaattaaccgggcatggtggcgggtgccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggc
s panTro5.chr6             29874877 194 + 175400573 tgctcacgcctgtaatcccagcactttgggaggccgaggcagactgatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccctctctctactaaatatacaagaaaaaattaaccgggcatggtggcgggtgccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109524 194 + 173848474 tgctcacgcctgtaatcccagcactttgggaggccaaggcagactgatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccctctctctactaaatatacaagaaaaaattaaccgggcatggtggcgggtgccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908145 194 +   6154872 tgctcacgcctgtaatcccagcactttgggaggccaaggcagactgatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctactaaatatacaagaaaaaattaaccgggcatggtggcgggtgcaagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggc
i gorGor5.CYUI01015250v1   C 0 C 0
e micMur3.chr6               143434  22 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            61681 372 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26247817  37 +  26524999 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e aotNan1.NW_018509740v1     328932   5 -    457564 I
e cebCap1.NW_016107755v1     244105   5 -   1771730 I
e calJac3.chrUn_GL286223      35062   0 +    132061 C
e colAng1.NW_012115566v1    2658530   6 -   3067355 I
e manLeu1.NW_012099233v1     208714   6 +    290775 I
e chlSab2.chr17            29022723   6 -  71996105 I
e cerAty1.NW_012002711v1     566565   6 +    766320 I
e macNem1.NW_012011356v1    2815690   6 -   2996164 I
e macFas5.chr4             29768967   4 - 170955103 I
e rheMac8.chr4             30105236   6 + 172585720 I
e nomLeu3.chr1a            74620187 1194 + 122973662 M

a score=80338.000000
s hg38.chr6_GL000254v2_alt   912168 103 +   4827813 ggagcttgcagtgagcagagatcgcgccactgcactccagcctgggcaagagagcaagactcggtctc-----aaaaagaaaagaaaagaaaagaaaTCTTACCTGGT
s panTro5.chr6             29875071 108 + 175400573 ggagcttgcagtgagcagagatcacgccactgcactccagcctgggcaagagagcaagactccgtctcaaaaaaaaaaaaaaagaaaagaaaagaaaaCTTACCTGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109718 106 + 173848474 ggagcttgcagtgagcagagatcacgccactgcactccagcctgggcaagagagcaagactccgtctc--aaaaaaaaaaaaagaaaagaaaagaaaaCTTACCTGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908339 104 +   6154872 agagcttgcagtgagcagagatcgcgccactgcactccagcctaggcaagagagcaagactctgtctc----aaaaaaaaaaaaaaaagaaaagaaaaCTTACCTGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74621381 100 + 122973662 ggagcttgcagtgagcagagaatgtgtcagtgcactccagcctgggcaacagagcaagactctgtttc--------aaaaaaaaaaaaaaaaaagaaaCTTACCTGGC
i nomLeu3.chr1a            M 1194 C 0
e micMur3.chr6               143434  22 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            61681 372 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26247817  37 +  26524999 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e aotNan1.NW_018509740v1     328932   5 -    457564 I
e cebCap1.NW_016107755v1     244105   5 -   1771730 I
e calJac3.chrUn_GL286223      35062   0 +    132061 C
e colAng1.NW_012115566v1    2658530   6 -   3067355 I
e manLeu1.NW_012099233v1     208714   6 +    290775 I
e chlSab2.chr17            29022723   6 -  71996105 I
e cerAty1.NW_012002711v1     566565   6 +    766320 I
e macNem1.NW_012011356v1    2815690   6 -   2996164 I
e macFas5.chr4             29768967   4 - 170955103 I
e rheMac8.chr4             30105236   6 + 172585720 I

a score=7220.000000
s hg38.chr6_GL000254v2_alt   912271 7 +   4827813 TGTAAGA
s panTro5.chr6             29875179 7 + 175400573 TGTAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109824 7 + 173848474 TGTAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908443 7 +   6154872 TGTAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74621481 7 + 122973662 TGTAAGA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chrUn_GL286223      35062 6 +    132061 TGTAAG-
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               143434 22 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            61681 372 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26247817 37 +  26524999 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e aotNan1.NW_018509740v1     328932 5 -    457564 I
e cebCap1.NW_016107755v1     244105 5 -   1771730 I
e colAng1.NW_012115566v1    2658530 6 -   3067355 I
e manLeu1.NW_012099233v1     208714 6 +    290775 I
e chlSab2.chr17            29022723 6 -  71996105 I
e cerAty1.NW_012002711v1     566565 6 +    766320 I
e macNem1.NW_012011356v1    2815690 6 -   2996164 I
e macFas5.chr4             29768967 4 - 170955103 I
e rheMac8.chr4             30105236 6 + 172585720 I

a score=13104.000000
s hg38.chr6_GL000254v2_alt   912278 4 +   4827813 TTTT
s panTro5.chr6             29875186 4 + 175400573 TTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109831 4 + 173848474 TTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908450 4 +   6154872 TTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74621488 4 + 122973662 TTTT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chrUn_GL286223      35068 4 +    132061 TTTT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244110 4 -   1771730 TTTT
i cebCap1.NW_016107755v1   I 5 C 0
s aotNan1.NW_018509740v1     328937 4 -    457564 TTTT
i aotNan1.NW_018509740v1   I 5 C 0
s micMur3.chr6               143456 4 + 123392446 TTTT
i micMur3.chr6             I 22 C 0
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            61681 372 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26247817 37 +  26524999 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e colAng1.NW_012115566v1    2658530 6 -   3067355 I
e manLeu1.NW_012099233v1     208714 6 +    290775 I
e chlSab2.chr17            29022723 6 -  71996105 I
e cerAty1.NW_012002711v1     566565 6 +    766320 I
e macNem1.NW_012011356v1    2815690 6 -   2996164 I
e macFas5.chr4             29768967 4 - 170955103 I
e rheMac8.chr4             30105236 6 + 172585720 I

a score=298278.000000
s hg38.chr6_GL000254v2_alt   912282 29 +   4827813 TTTCTCATTTAGTCAATAAATATTTATGG
s panTro5.chr6             29875190 29 + 175400573 TTTCTCATTTAGTCAATAAATATTTATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109835 29 + 173848474 TTTCTCATTTAGTCAATAAATATTTATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908454 29 +   6154872 TTTCTCATTTAGTCAATAAATATTTATGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74621492 29 + 122973662 TTTCTCATTTAGTCAATAAATATTTATGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30105242 29 + 172585720 TTTCTCATTTAGTCAATAAATATTTATGG
i rheMac8.chr4             I 6 I 879
s macFas5.chr4             29768971 29 - 170955103 TTTCTCATTTAGTCAATAAATATTTATGG
i macFas5.chr4             I 4 I 816
s macNem1.NW_012011356v1    2815696 29 -   2996164 TTTCTCATTTAGTCAATAAATATTTATGG
i macNem1.NW_012011356v1   I 6 I 884
s cerAty1.NW_012002711v1     566571 29 +    766320 TTTCTCATTTAGTCAATAAATATTTATGG
i cerAty1.NW_012002711v1   I 6 C 0
s chlSab2.chr17            29022729 29 -  71996105 TTTCTCATTTAGTCAATAAATATTTATGG
i chlSab2.chr17            I 6 I 539
s manLeu1.NW_012099233v1     208720 29 +    290775 TTTCTCATTTAGTCAATAAATATTTATGG
i manLeu1.NW_012099233v1   I 6 C 0
s colAng1.NW_012115566v1    2658536 29 -   3067355 TTTCTCATTTAGTTAATAAATATTTATGG
i colAng1.NW_012115566v1   I 6 C 0
s calJac3.chrUn_GL286223      35072 29 +    132061 TTTCTTATTTATTCAATAAATATTTGTGG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244114 29 -   1771730 TTTCTTATTTATTCAATAAATATTTATGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     328941 29 -    457564 TTTCTTATTTATTCAATAAATATTTATGA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               143460 29 + 123392446 CTTCTCATTTGTTCAATAAATATTTATGG
i micMur3.chr6             C 0 C 0
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            61681 372 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26247817 37 +  26524999 I
e otoGar3.GL873550           130480 3229 +  18854210 I

a score=164069.000000
s hg38.chr6_GL000254v2_alt   912311 32 +   4827813 AATAGGGCAGTTTGGGATCACACACATGAGCT
s panTro5.chr6             29875219 32 + 175400573 AATAGGGCAGTTTGGGATCACACACATGAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109864 32 + 173848474 AATAGGGCAGTTTGGGATCACACACATGAGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908483 32 +   6154872 AATAGGGCAGTTTGGGATCACACACATGAGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74621521 32 + 122973662 AGTAGGGCACTTTGGGATCACACACATGAGCT
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002711v1     566600 32 +    766320 AATAGGGCATTTTGGGATCACACACATGAGCT
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099233v1     208749 32 +    290775 AATAGGGCATTTTGGGATCACACACATGAGCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2658565 32 -   3067355 AATAGGGCATTTTGGGATCACACACATGAGCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      35101 30 +    132061 AATAGGGCACTTTGGGATCACACAC--GAGTT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244143 32 -   1771730 AATAGGGCACTTTGAGATCACACACATGAGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     328970 32 -    457564 AATAGGACACTTTGGGATCATACACATGAGCT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               143489 32 + 123392446 AGTAAGGCACTTCGCGACCACACGTGTGAGCG
i micMur3.chr6             C 0 C 0
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            61681 372 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26247817 37 +  26524999 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e chlSab2.chr17            29022758 539 -  71996105 I
e macNem1.NW_012011356v1    2815725 884 -   2996164 I
e macFas5.chr4             29769000 816 - 170955103 I
e rheMac8.chr4             30105271 879 + 172585720 I

a score=133141.000000
s hg38.chr6_GL000254v2_alt   912343 21 +   4827813 AAGCATGATGTCAGCCTTCAT
s panTro5.chr6             29875251 21 + 175400573 AAGCATGATGTCAGCCTTCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109896 21 + 173848474 AAGCATGATGTCAGCCTTCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908515 21 +   6154872 AAGCATGATGTCAGCCTTCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74621553 21 + 122973662 AAGCATGATGTCCCCCTTCAT
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002711v1     566632 21 +    766320 AAGCATGATGTCAGCCTTCAT
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099233v1     208781 21 +    290775 AAGCATGATGTCAGCCTTCAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2658597 21 -   3067355 AAGCATGATGTCAGCCTTCAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      35131 20 +    132061 AA-CGTGATGTCAGCCTTCAT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244175 21 -   1771730 AAGCATGATGTCAGCCTTCAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     329002 21 -    457564 AAGCGTGATGTCAGCCTTCAT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               143521 21 + 123392446 AGGCATGGTGGCAGCCTTCAT
i micMur3.chr6             C 0 C 0
s canFam3.chr35            26247854 21 +  26524999 AGACATGATGTCAGCCTTCAT
i canFam3.chr35            I 37 C 0
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            61681 372 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e chlSab2.chr17            29022758 539 -  71996105 I
e macNem1.NW_012011356v1    2815725 884 -   2996164 I
e macFas5.chr4             29769000 816 - 170955103 I
e rheMac8.chr4             30105271 879 + 172585720 I

a score=23075.000000
s hg38.chr6_GL000254v2_alt   912364 3 +   4827813 AGC
s panTro5.chr6             29875272 3 + 175400573 AGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109917 3 + 173848474 AGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908536 3 +   6154872 AGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74621574 3 + 122973662 AGC
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29769816 3 - 170955103 AGC
i macFas5.chr4             I 816 C 0
s cerAty1.NW_012002711v1     566653 3 +    766320 AGC
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099233v1     208802 3 +    290775 AGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2658618 3 -   3067355 AGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      35151 3 +    132061 AAC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244196 3 -   1771730 AGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     329023 3 -    457564 AGC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               143542 3 + 123392446 AGC
i micMur3.chr6             C 0 I 60
s canFam3.chr35            26247875 3 +  26524999 AGT
i canFam3.chr35            C 0 C 0
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            61681 372 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e chlSab2.chr17            29022758 539 -  71996105 I
e macNem1.NW_012011356v1    2815725 884 -   2996164 I
e rheMac8.chr4             30105271 879 + 172585720 I

a score=123042.000000
s hg38.chr6_GL000254v2_alt   912367 21 +   4827813 TCCTACAATGTGGTATGGTGA
s panTro5.chr6             29875275 21 + 175400573 TCCTACAATGTGGTATGGTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109920 21 + 173848474 TCCTACAATGTGGTATGGTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908539 21 +   6154872 TCCTACAATGTGGTATGGTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74621577 21 + 122973662 TCCTACAATGTGGTATGGTGA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29769819 21 - 170955103 TCCTACAGTGTGGTATGGTGA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     566656 21 +    766320 TCCTACAGTGTGGTATGGTGA
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099233v1     208805 21 +    290775 TCCTACAGTGTGGTATGGTGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2658621 21 -   3067355 TCCTACAGTGTGGTATGGTGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      35154 18 +    132061 TC---CAATGTGGTATGGTGA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244199 21 -   1771730 TCCTACAGTATGGTATGGTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     329026 21 -    457564 TCCTACAGGGTGGTATGGTGA
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26247878 21 +  26524999 CTTTACAGTCTGGTAAGGCAG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               143545 60 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            61681 372 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e otoGar3.GL873550           130480 3229 +  18854210 I
e chlSab2.chr17            29022758 539 -  71996105 I
e macNem1.NW_012011356v1    2815725 884 -   2996164 I
e rheMac8.chr4             30105271 879 + 172585720 I

a score=8085.000000
s hg38.chr6_GL000254v2_alt   912388 3 +   4827813 TTT
s panTro5.chr6             29875296 3 + 175400573 TTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109941 3 + 173848474 TAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908560 3 +   6154872 TTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74621598 3 + 122973662 ttt
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29769840 3 - 170955103 ttt
i macFas5.chr4             C 0 I 2
s cerAty1.NW_012002711v1     566677 3 +    766320 Ctt
i cerAty1.NW_012002711v1   C 0 I 2
s manLeu1.NW_012099233v1     208826 3 +    290775 CTT
i manLeu1.NW_012099233v1   C 0 I 30
s colAng1.NW_012115566v1    2658642 3 -   3067355 CTA
i colAng1.NW_012115566v1   C 0 I 5
s calJac3.chrUn_GL286223      35172 3 +    132061 TGt
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244220 3 -   1771730 ttt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     329047 3 -    457564 ttt
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               143545 60 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            61681 372 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26247899 0 +  26524999 C
e otoGar3.GL873550           130480 3229 +  18854210 I
e chlSab2.chr17            29022758 539 -  71996105 I
e macNem1.NW_012011356v1    2815725 884 -   2996164 I
e rheMac8.chr4             30105271 879 + 172585720 I

a score=31351.000000
s hg38.chr6_GL000254v2_alt   912391 5 +   4827813 TTTTT
s panTro5.chr6             29875299 5 + 175400573 TTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109944 5 + 173848474 TTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908563 5 +   6154872 TTTTT
i gorGor5.CYUI01015250v1   C 0 I 1
s nomLeu3.chr1a            74621601 5 + 122973662 ttttt
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29769845 5 - 170955103 ttttc
i macFas5.chr4             I 2 I 22
s cerAty1.NW_012002711v1     566682 5 +    766320 tttct
i cerAty1.NW_012002711v1   I 2 I 20
s chlSab2.chr17            29023297 5 -  71996105 ttttt
i chlSab2.chr17            I 539 C 0
s manLeu1.NW_012099233v1     208859 5 +    290775 ttttt
i manLeu1.NW_012099233v1   I 30 C 0
s colAng1.NW_012115566v1    2658650 5 -   3067355 ttttc
i colAng1.NW_012115566v1   I 5 I 24
s calJac3.chrUn_GL286223      35175 5 +    132061 ttttt
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244223 5 -   1771730 ttttt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     329050 5 -    457564 ttttt
i aotNan1.NW_018509740v1   C 0 I 66
e micMur3.chr6               143545 60 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            61681 372 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26247899 0 +  26524999 C
e otoGar3.GL873550           130480 3229 +  18854210 I
e macNem1.NW_012011356v1    2815725 884 -   2996164 I
e rheMac8.chr4             30105271 879 + 172585720 I

a score=-1846.000000
s hg38.chr6_GL000254v2_alt   912396 2 +   4827813 TC-
s panTro5.chr6             29875304 2 + 175400573 TC-
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908569 2 +   6154872 TC-
i gorGor5.CYUI01015250v1   I 1 C 0
s nomLeu3.chr1a            74621606 1 + 122973662 -c-
i nomLeu3.chr1a            C 0 C 0
s calJac3.chrUn_GL286223      35180 2 +    132061 -ct
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244228 2 -   1771730 -ct
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               143545 60 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            61681 372 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26247899 0 +  26524999 C
e otoGar3.GL873550           130480 3229 +  18854210 I
e aotNan1.NW_018509740v1     329055 66 -    457564 I
e colAng1.NW_012115566v1    2658655 24 -   3067355 I
e manLeu1.NW_012099233v1     208864 0 +    290775 C
e chlSab2.chr17            29023302 0 -  71996105 C
e cerAty1.NW_012002711v1     566687 20 +    766320 I
e macNem1.NW_012011356v1    2815725 884 -   2996164 I
e macFas5.chr4             29769850 22 - 170955103 I
e rheMac8.chr4             30105271 879 + 172585720 I
e panPan2.chr6             30109949 0 + 173848474 C

a score=64548.000000
s hg38.chr6_GL000254v2_alt   912398 13 +   4827813 -----------------------TTTTTGAGAT-----GGG
s panTro5.chr6             29875306 13 + 175400573 -----------------------TTTTTGAGAT-----GGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109949 13 + 173848474 -----------------------CTTTTGAGAT-----GGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908571 13 +   6154872 -----------------------TTTTTGAGAT-----GGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74621607 13 + 122973662 -----------------------tttttgagat-----ggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30106150 14 + 172585720 -----------------------tttttGAGAT----GGGG
i rheMac8.chr4             I 879 C 0
s macFas5.chr4             29769872 14 - 170955103 -----------------------tttttGAGAT----GGGG
i macFas5.chr4             I 22 C 0
s macNem1.NW_012011356v1    2816609 14 -   2996164 -----------------------tttttGAGAT----GGGG
i macNem1.NW_012011356v1   I 884 C 0
s cerAty1.NW_012002711v1     566707 14 +    766320 -----------------------tttttGAGAT----GGGG
i cerAty1.NW_012002711v1   I 20 C 0
s chlSab2.chr17            29023302 13 -  71996105 -----------------------tttttGAGAT-----GGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     208864 14 +    290775 -----------------------tttttgagat----gggg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2658679 18 -   3067355 -----------------------ttttttAGATGGGGGGGG
i colAng1.NW_012115566v1   I 24 C 0
s calJac3.chrUn_GL286223      35182 36 +    132061 tttttatcttttctttttttttttttttGAGAT-----GGG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244230 35 -   1771730 ttttt-tgttcttttcttttctttttttGAGAT-----GGG
i cebCap1.NW_016107755v1   C 0 I 6
e micMur3.chr6               143545 60 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            61681 372 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26247899  0 +  26524999 C
e otoGar3.GL873550           130480 3229 +  18854210 I
e aotNan1.NW_018509740v1     329055 66 -    457564 I

a score=102189.000000
s hg38.chr6_GL000254v2_alt   912411 21 +   4827813 AGTCTCACTGTGTCAACCAGC
s panTro5.chr6             29875319 21 + 175400573 AGTCTCACTGTGTCAACCAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109962 21 + 173848474 AGTCTCACTGTGTCAACCAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908584 21 +   6154872 AGTCTCACTGTGTCAACCAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74621620 21 + 122973662 agtctcactctgtcaaccaAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30106164 21 + 172585720 GGTCTCACTCTGTCAAccagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29769886 21 - 170955103 GGTCTCACTCTGTCAAccagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2816623 21 -   2996164 GGTCTCACTCTGTCAAccagg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     566721 21 +    766320 GGTCTCACTCTGTCAAccagg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29023315 21 -  71996105 GGTCTCACTCTGTCAAccagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     208878 21 +    290775 ggtctcactctgtcaaccagT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2658697 21 -   3067355 GGTCTCACTCTGTCAAccagg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      35218  6 +    132061 -CTCTTG--------------
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               143545 60 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            61681 372 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26247899  0 +  26524999 C
e otoGar3.GL873550           130480 3229 +  18854210 I
e aotNan1.NW_018509740v1     329055 66 -    457564 I
e cebCap1.NW_016107755v1     244265  6 -   1771730 I

a score=1715208.000000
s hg38.chr6_GL000254v2_alt   912432 207 +   4827813 Ctcaaacagtccttccatctcagcctcccaagtacctgggactacaggtgcatgccaccatgcccagctac-ttttttgtatttttgatagaaacagggttttgccatgttggccaggctgatctcaaattcctttcctcaa----gtgatccgcctgccttggcctccaagagtgctgggattacaggcatgagccactgcacccagccAA
s panTro5.chr6             29875340 207 + 175400573 Ctcaaacaatccgtccatctcagcctcccaagtacctgggactacaggtgcatgccaccatgcccagctac-ttttttgtatttttgatagaaacagggttttgccatgttggccaggctgatctcaaattcctttcctcaa----gtgatccgcctgccttggcctccaagagtgctgggattacaggcatgagccactgcacccagccAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30109983 207 + 173848474 Ctcaaacaatccgtccatctcagcctcccaagtacctgggactacaggtgcatgccaccatgcccagctac-ttttttgtatttttgatagaaacagggttttgccatgttggccaggctgatctcaaattcctttcctcaa----gtgatccgcctgccttggcctccaagagtgctgggattacaggcatgagccactgcacccagccAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908605 207 +   6154872 Ctcaaacagtccttccatctcagcctcccaagtacctgggactacaggtgcatgccaccgtgcccagctac-ttttttgtatttttgatagaaacagcgttttgccatgttggccaggctgatctcaaattcctctcctcaa----gtgatctgcctgcctcggcctccaagagtgctgggattacaggcatgagccactgcacccagccAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74621641 207 + 122973662 Ctcaagcaatccttccatctcagcctcccaagtagctgggactacaggtgcatgccaccatgccc-gctactttttttgtatttttgatagaaatagggttttgtcatgttggccaggctaatctcaaattcctttcctcaa----gtgatccgcctgcctcggcctcccagagtgctgggtttacaggcatgagccactgcgcccagccCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30106185 205 + 172585720 ctcaagcaatccttccatctcagcctcccaaggagctggaacaacaggtgcatgtcactatgcccagct---ttttttgtatttttgatagaaacagagttttgccatgttggccaggctgatctcaaactcctggcctcaa----gtgatccgcctgcctcagcctcccggagtcctgggattacaggcatgagccactgcccccagccAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29769907 205 - 170955103 ctcaagcaatccttccatctcagcctcccaaggagctggaacaacaggtgcatgtcaccatgcccagct---ttttttgtatttttgatagaaacagagttttgccatgttggccaggctgatctcaaactcctggcctcaa----gtgatccgcctgcctcagcctcccggagtcctgggattacaggcatgagccactgcccccagccAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2816644 205 -   2996164 ctcaagcaatccttccatctcagcctcccaaggagctggaacaacaggtgcatgtcaccatgcccagct---ttttttgtatttttgatagaaacagaattttgccatgttggccaggctgatctcaaactcctggcctcaa----gtgatccgcctgcctcagcctcccggagtcctgggattacaggcatgagccactgcccccagccAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     566742 206 +    766320 ctcaagcaatccttccatctcagcctcccaaggagctgggactacaagtgcatgtcaccatgcccagcta--ttttttgtatttttgatagaaacagagttttgccatgttggccaggctgatctcaaactcctggcctcaa----gtgatccgcctgcctcagcctcccagagtgctgggattacaggcgtgagccactgcccccagccAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29023336 206 -  71996105 ctcaagcaatccttccatctcagcctcccaaggagctggaactacaggtgcatgtcaccatgcccagcta--ttttttgtatttttgatagaaacagagttttgccatgttgaccaggctgatctcaaactcctggcctcaa----gtgatccgcctgcctcagcctcccagagtgctgggattacaggcgtgagccactgcccccagccAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     208899 206 +    290775 Ctcaagcaatccttccatctcagcctcccaaggagctgggactacaagtgcatgtcaccatgcccagcta--ttttttgtatttttgatagaaacagagttttgccatgttggccaggctgatctcaaactcctggcctcaa----gtgatccgcctgcctcagcctcccagagtgctgggattacaggcgtgagccactgcccccagccAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2658718 206 -   3067355 ctcaagcaatccttccatctcagcctcccaaggagctgggactacaggtgcatgtcaccatgcccagcta--ttttttgtatttttgatagaaacagagttttgccatgttggccaggctgatctcaaactcctggcctcaa----gtgatccgcctgcctcagcctcccagagtgctgagattacaggcgtgagccactgcccccagccAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      35224 211 +    132061 Ctcaagcaatcctcccatctcagcctcccaagtagctgggactacaggtgcacgccaccatgctcagctac-ttttgtgtatttttgatagaaacagggttttgccatattggccagactggtctcaaactcctggcttacatgtggtgatgcacctgcctcaacctcccagaatgctgggattacaggcgtgagccactgtgccAAGTCAG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244271 211 -   1771730 ctcaagcaatcctcccatctcagcctcccaactagctgggactacaggtgcacaccaccatgctcagctac-tcttgtgtattttttatagaaacagggtttcaccatattggccaggctggtctcaaactcctggcttacaggtggtggtgcacctgccttaacctcccagaatgctgggattacagacgtgagccactgtgccaagccAG
i cebCap1.NW_016107755v1   I 6 C 0
s aotNan1.NW_018509740v1     329121 211 -    457564 Ctcaagcaatcctctcatctcagcctcccaagtagctgggactacaggcgcacgccaccacgctcagctac-ttttatgtatttttgatagaaacagggtttcgccatattggccaggctggtctcaaactccttgcttacaggtggtggtgcacctgcctcaacctcccaaaatgctgggattacaggcgtgagccactgtgccAAGTCAG
i aotNan1.NW_018509740v1   I 66 C 0
e micMur3.chr6               143545  60 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            61681 372 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26247899   0 +  26524999 C
e otoGar3.GL873550           130480 3229 +  18854210 I

a score=25872.000000
s hg38.chr6_GL000254v2_alt   912639 3 +   4827813 TGA
s panTro5.chr6             29875547 3 + 175400573 TGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30110190 3 + 173848474 TGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908812 3 +   6154872 TGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74621848 3 + 122973662 TGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30106390 3 + 172585720 TGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770112 3 - 170955103 TGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2816849 3 -   2996164 TGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     566948 3 +    766320 TGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29023542 3 -  71996105 TGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209105 3 +    290775 TGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2658924 3 -   3067355 TGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      35435 3 +    132061 TGA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244482 3 -   1771730 TGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     329332 3 -    457564 TGA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           133709 3 +  18854210 TGA
i otoGar3.GL873550         I 3229 C 0
e micMur3.chr6               143545 60 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            61681 372 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e canFam3.chr35            26247899 0 +  26524999 C

a score=32760.000000
s hg38.chr6_GL000254v2_alt   912642 3 +   4827813 TTT
s panTro5.chr6             29875550 3 + 175400573 TTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30110193 3 + 173848474 TTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908815 3 +   6154872 TTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74621851 3 + 122973662 TTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30106393 3 + 172585720 TTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770115 3 - 170955103 TTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2816852 3 -   2996164 TTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     566951 3 +    766320 TTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29023545 3 -  71996105 TTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209108 3 +    290775 TTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2658927 3 -   3067355 TTT
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     244485 3 -   1771730 TTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     329335 3 -    457564 TTT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           133712 3 +  18854210 TTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26247899 3 +  26524999 TTT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               143545 60 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            61681 372 +    102524 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I
e calJac3.chrUn_GL286223      35438 0 +    132061 C

a score=427998.000000
s hg38.chr6_GL000254v2_alt   912645 42 +   4827813 TAAAACTGGAATACAGAAAGA--GAAGAAGAAAGTCATGCTCCA
s panTro5.chr6             29875553 42 + 175400573 TAAAACTGGAATACAGAAAGA--GAAGAAGAAAGTCATGCTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30110196 42 + 173848474 TAAAACTGGAATACAGAAAGA--GAAGAAGAAAGTCATGCTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908818 42 +   6154872 TAAAACTGGAATACAGAAAGA--GAAGAAGAAAGTCATGCTCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74621854 42 + 122973662 TAAAACTGGAATACAGAAAGA--CAAGAAGAAAGTCATGCTCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30106396 42 + 172585720 TAAAACTGGAATACAGAAACA--GAATAAGATAATCATGCTCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770118 42 - 170955103 TAAAACTGGAATACAGAAACA--GAATAAGATAGTCATGCTCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2816855 42 -   2996164 TAAAACTGGAATACAGAAACA--GAATAAGATAGTCATGCTCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     566954 42 +    766320 TAAAACTGGAATACAGAAACA--GAATAAGATAGTCATGCTCCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29023548 42 -  71996105 TAAAACTGGAATACAGGAACA--GAATAAGATAGTCATGCTCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209111 42 +    290775 TAAAACTGGAATACAGAAACA--GAATAAGATAGTCATGCTCCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2658930 42 -   3067355 TAAAACTGGAATACAGAAACA--GAATAAGATAGTCATGCTCCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      35438 41 +    132061 -AAAACTGGAATACAGAAAGA--GAAGAAAAAAGTCATGATCCA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244488 42 -   1771730 TAAAACTGGAATACAGAAAGA--GAAGAATGAAGTCATGCTCCG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     329338 42 -    457564 TAAAACTGGAATACAGAAAGA--GAAGAAGAAAGTCATGCTCCA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           133715 42 +  18854210 TAAATCTGGAACATAGAAAGA--GAGAAATAAATCCATGCCCTA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26247902 42 +  26524999 TAAAACTGGAATGCAGAAAGATGGCAAAATAAATCTATGCTG--
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            62053 44 +    102524 taaaaCTGGGACCCATGAAGATAGCAAAATAAGCCCACGCCCTG
i dasNov3.JH582591         I 372 C 0
e micMur3.chr6               143545 60 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e proCoq1.NW_012152574v1     612918 14494 +    730504 I

a score=872780.000000
s hg38.chr6_GL000254v2_alt   912687 62 +   4827813 TCTTTATTATTTAAAAATCAGAACAGATACACA-TA--TTTGTTGTG-AGCAC-TAATTAAAATATC
s panTro5.chr6             29875595 62 + 175400573 TCTTTATTATTTAAAAATCAGAACAGATACACA-TA--TTTGTTGTG-AGCAC-TAATTAAAATATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30110238 62 + 173848474 TCTTTATTATTTAAAAATCAGAACAGATACACA-TA--TTTGTTGTG-AGCAC-TAATTAAAATATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908860 62 +   6154872 TCTTTATTATTTAAAAATCAGAACAGATACACA-TA--TTTGTTGTG-AGCAC-TAATTAAAATGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74621896 62 + 122973662 TCTTTATTATTTAAAAAGCAGAACAGATACACA-TA--TTCATTGTG-AGCAC-TAATTAAAATATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30106438 62 + 172585720 TCTTTATTATTTAAAAATCAGAAGAGATACACA-TA--TTTGTTGTG-AGCAC-TAATTAAAATATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770160 62 - 170955103 TCTTTATTATTTAAAAATCAGAAGAGATACACA-TA--TTTGTTGTG-AGCAC-TAATTAAAATATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2816897 62 -   2996164 TCTTTATTATTTAAAAATCAGAAGAGATACACA-TA--TTTGTTGTG-AGCAC-TAATTAAAATATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     566996 62 +    766320 TCTTTATTATTTAAAAATCAGAAGAGATACACA-TA--TTTGTTGTG-AGCAC-TAATTAAAATATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29023590 62 -  71996105 TCTTTATTATTTAAAAATCAGAAGAGATACATA-TA--TTTGTTGTG-AGCAC-TAATTAAAATATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209153 62 +    290775 TCTTTATTATTTAAAAATCAGAAGAGATACACA-TA--TTTGTTGTG-AGCAC-TAATTAAAATATC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2658972 62 -   3067355 TCTTTATTATTTAAAAATCAGAAGAGATACACA-TA--TTTGTTGTG-AGCAC-TAATTAAAATATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      35479 63 +    132061 TCTTTATTATTTAAAAATCAGAACAGATACACATTA--TTTGTTGTG-AGCAA-TAATTAAAATATT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244530 62 -   1771730 TCTTTATTATTTAAAAATCTGAACAGACACACA-TA--TTTGTTGTG-AATAA-TAATTAAAATATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     329380 62 -    457564 TCTTTATTATTTAAAAATCAGAACAGATACACA-TA--TTTGTTGTG-AGCAA-TAATTAAAATATC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               143605 61 + 123392446 TCTTTATTATTTAAAAATCAGAATAG-TGCATA-TA--TTTCTTGTG-AGCAC-GGATTAAAATATC
i micMur3.chr6             I 60 I 2532
s proCoq1.NW_012152574v1     627412 62 +    730504 TCTTTATTATTTAAAAATCAGAATAGATGCATA-TA--TTGCTTGTG-AGCAC-TAATTAAAATATT
i proCoq1.NW_012152574v1   I 14494 C 0
s otoGar3.GL873550           133757 63 +  18854210 TCTTTATTATTT-AAAATCAAAACAGATGTATA-TA--CTTCTTGTGAAGTATATAATTAAAATATC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26247944 60 +  26524999 TTTTTATTATATAAAAAACAAAACA--TACATA-TA--TTTCTTATG-GCCAG-TAATTAAAATATC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            62097 64 +    102524 TCTTCTTTATTTCAAAATCAGGACAGACACATG-TACTTTTTTTGTG-AGCAC-TAATTAAAATATC
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57949304 2992 -  94987271 I

a score=208938.000000
s hg38.chr6_GL000254v2_alt   912749 19 +   4827813 CTTAAAGTTTCCTTACCTT
s panTro5.chr6             29875657 19 + 175400573 CTTAAAGTTTCCTTACCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30110300 19 + 173848474 CTTAAAGTTTCCTTACCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908922 19 +   6154872 CTTAAAGTTTCCTTACCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74621958 19 + 122973662 CTTAAAGTTTCCTTACCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30106500 19 + 172585720 CTTAAAGTTTCCTTACCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770222 19 - 170955103 CTTAAAGTTTCCTTACCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2816959 19 -   2996164 CTTAAAGTTTCCTTACCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567058 19 +    766320 CTTAAAATTTCCTTACCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29023652 19 -  71996105 CTTAAAGTTTCCTTACCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209215 19 +    290775 CTTAAAATTTCCTTACCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659034 19 -   3067355 CTTAAAGTTTCCTTACCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      35542 15 +    132061 CT----GTTTCCTTACTTT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244592 17 -   1771730 CTT--AGTTTCCTTACTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     329442 17 -    457564 CTT--AGTTTCCTTACTTT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     627474 15 +    730504 ----AAGTTTCCTTACTTT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           133820 14 +  18854210 -----AGTTTCCTTACCTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26248004 15 +  26524999 ----AAGTTTCTTTAGTCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            62161 15 +    102524 ----AAGTTTCCTTACTTT
i dasNov3.JH582591         C 0 I 449
e micMur3.chr6               143666 2532 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I

a score=457767.000000
s hg38.chr6_GL000254v2_alt   912768 48 +   4827813 GGAGTGGAATTATTTGCATATGTATACACATGATGCTGACT-TTAGAAG
s panTro5.chr6             29875676 48 + 175400573 GGAGTGGAATTATTCGCATATGTATACACATGATGTTGACT-TTAGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30110319 48 + 173848474 GGAGTGGAATTATTCGCATATGTATACACATGATGCTGACT-TTAGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908941 48 +   6154872 GGAGTGGAATTATTCGCATATGTATACACATGATGCTGACT-TTAGAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74621977 48 + 122973662 GGAGTGGAATTATTCGCATATGTATACACATGATGCTGACT-TTAGAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30106519 48 + 172585720 GAAGTGGAATTATTTGCATATGTATACACATGATACTGACT-TTAGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770241 48 - 170955103 GAAGTGGAATTATTTGCATATGTATACACATGATACTGACT-TTAGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2816978 48 -   2996164 GAAGTGGAATTATTTGCATATGTATACACATGATACTGACT-TTAGAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567077 48 +    766320 GAAGTGGAATTATTTGCATATGTATACACATGATGCTGACT-TTAGAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29023671 48 -  71996105 GAAGTGGAATTATTTGCATATGTATACACATGATACTGACT-TTAGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209234 48 +    290775 GAAGTGGAATTATTTGCATATGTATACACATGATGCTGACT-TTAGAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659053 48 -   3067355 GAAGTGGAATTATTCGCATATGTATACACATGATGCTGACT-TTAGAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      35557 42 +    132061 GGAGTGGAATTATTCAC------ATACACAGGATGCTGACT-TTAGAAG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244609 42 -   1771730 GGAGTGGAATTATTCAC------ATACACAGGATGCTCACT-TTAGTAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     329459 41 -    457564 GGAGTGGAATTATTCAC------ATACACAGGATGCTCACT-TTA-AAG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     627489 46 +    730504 GAGGTGGAATAATTCACATACATATGCACATAGTGCTGAC---TAGAAC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           133834 46 +  18854210 GAGGTGGAATTATTCATATCCATATATACTTGGTGCTGAC---TAGAAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26248019 49 +  26524999 GGGGTGGAATTATTCACATGCTTAAGCACTCTGTGGTAACTGGTATAGG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               143666 2532 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e dasNov3.JH582591            62176 449 +    102524 I

a score=180823.000000
s hg38.chr6_GL000254v2_alt   912816 14 +   4827813 AAAAGTTACAAGTT
s panTro5.chr6             29875724 14 + 175400573 AAAAGTTACAAGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30110367 14 + 173848474 AAAAGTTACAAGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5908989 14 +   6154872 AAAAGTTACAAGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74622025 14 + 122973662 AAAAGTTACAAGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30106567 14 + 172585720 AAAAGTTACAAGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770289 14 - 170955103 AAAAGTTACAAGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817026 14 -   2996164 AAAAGTTACAAGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567125 14 +    766320 AAAAATTACAAGTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29023719 14 -  71996105 AAAAGTTACAAGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209282 14 +    290775 AAAAGTTACAAGTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659101 14 -   3067355 AAAAGTTACAAGTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      35599 14 +    132061 AAAAGTTACAAGTT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244651 14 -   1771730 AAAAGTTACAAGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     329500 14 -    457564 AAAAGTTACAAGTT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     627535 14 +    730504 ATAAGTTACAAATT
i proCoq1.NW_012152574v1   C 0 I 1
s otoGar3.GL873550           133880 14 +  18854210 AAAAGTTACAAGTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26248068 12 +  26524999 --AAGTTACAATTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            62625 12 +    102524 aaaaattaaaaa--
i dasNov3.JH582591         I 449 C 0
e micMur3.chr6               143666 2532 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I

a score=185286.000000
s hg38.chr6_GL000254v2_alt   912830 13 +   4827813 AAAACACGTTTGA
s panTro5.chr6             29875738 13 + 175400573 AAAACACGTTTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30110381 13 + 173848474 AAAACACGTTTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909003 13 +   6154872 AAAACACGTTTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74622039 13 + 122973662 AAAACATGTTTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30106581 13 + 172585720 AAAACATGTTTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770303 13 - 170955103 AAAACATGTTTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817040 13 -   2996164 AAAACATGTTTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567139 13 +    766320 AAACCATGTTTGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29023733 13 -  71996105 AAAACATGTTTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209296 13 +    290775 AAACCATGTTTGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659115 13 -   3067355 AAAACATGTTTGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      35613 13 +    132061 AAAACATGTTTGG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244665 13 -   1771730 AAAACATGTTTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     329514 13 -    457564 AAAACATGTTTGG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               146198 13 + 123392446 AAAACACGTTTGA
i micMur3.chr6             I 2532 C 0
s proCoq1.NW_012152574v1     627550 13 +    730504 AAAACATGTTTGA
i proCoq1.NW_012152574v1   I 1 C 0
s otoGar3.GL873550           133894 13 +  18854210 AAAACGTGTTTGg
i otoGar3.GL873550         C 0 I 265
s canFam3.chr35            26248080 13 +  26524999 AAAATAGGTTTGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            62637 13 +    102524 AAAATAGACCTGA
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57949304 2992 -  94987271 I

a score=5830.000000
s hg38.chr6_GL000254v2_alt   912843 1 +   4827813 T
s panTro5.chr6             29875751 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30110394 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909016 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74622052 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30106594 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770316 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817053 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567152 1 +    766320 C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29023746 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209309 1 +    290775 C
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659128 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      35626 1 +    132061 T
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     244678 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     329527 1 -    457564 T
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               146211 1 + 123392446 T
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     627563 1 +    730504 T
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           134172 1 +  18854210 T
i otoGar3.GL873550         I 265 C 0
s canFam3.chr35            26248093 1 +  26524999 T
i canFam3.chr35            C 0 I 534
s dasNov3.JH582591            62650 1 +    102524 C
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57949304 2992 -  94987271 I

a score=56358.000000
s hg38.chr6_GL000254v2_alt   912844 4 +   4827813 TAAT
s panTro5.chr6             29875752 4 + 175400573 TAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30110395 4 + 173848474 TAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909017 4 +   6154872 TAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74622053 4 + 122973662 TAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30106595 4 + 172585720 TAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770317 4 - 170955103 TAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817054 4 -   2996164 TAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567153 4 +    766320 TAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29023747 4 -  71996105 TAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209310 4 +    290775 TAAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659129 4 -   3067355 TAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      35627 4 +    132061 TAAT
i calJac3.chrUn_GL286223   C 0 I 298
s cebCap1.NW_016107755v1     244679 4 -   1771730 taat
i cebCap1.NW_016107755v1   C 0 I 2
s aotNan1.NW_018509740v1     329528 4 -    457564 TAAT
i aotNan1.NW_018509740v1   C 0 I 2
s micMur3.chr6               146212 4 + 123392446 TAAT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     627564 4 +    730504 TAGT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           134173 4 +  18854210 TAAT
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            62651 4 +    102524 TAAT
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57949304 2992 -  94987271 I
e canFam3.chr35            26248094 534 +  26524999 I

a score=1226014.000000
s hg38.chr6_GL000254v2_alt   912848 105 +   4827813 -AAAAGAAA---------------------AAGAAAT-----AAATTATACATAAATTTAGCTTTGTTGCTGAAAATCACCTCTCCAAACATAGAGTTCAGGTT---GGGGC-AAA--TAAAAAATTGCATAAAACAA
s panTro5.chr6             29875756 105 + 175400573 -AAAAGAAA---------------------AAGAAAT-----AAATTATACATAAATTTAGCTTTGTTGCTGAAAATCACCTCTCCAAACATAGAGTTCAGGTT---GGGGC-AAA--TAAAAAATTGCATAAAACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30110399 105 + 173848474 -AAAAGAAA---------------------AAGAAAT-----AAATTATACATAAATTTAGCTTTGTTGCTGAAAATCACCTCTCCAAACATAGAGTTCAGGTT---GGGGC-AAA--TAAAAAATTGCATAAAACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909021 105 +   6154872 -AAAAGAAA---------------------AAGAAAT-----AAATTATACATAAATTTAGCTTTGTTGCTGAAAATCACCTATCCAAACATAGAGTTCAGGTT---GGGGC-AAA--TAAAAAATTGCATAAAACAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74622057 106 + 122973662 -AAAAGAAA---------------------AAGAAAT-----AAATTATACACAAATTTAGCTTTGTTGCTGAAAATCACCTCTCTAAACATAGAGTTCAGGTT---GGGGCAAAA--AAAAAAATTGCATAAAACAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30106599 105 + 172585720 -AAAAGAAA---------------------AAGGAAC-----AAATTATACATAAATTTAGCTTAGTTGCTGAATATCACCTCTCCAAACATAGAGTTCAGGTT---GGGGC-AAA--TAAAAAACTGTATAAAACAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770321 105 - 170955103 -AAAAGAAA---------------------AAGGAAC-----AAATTATACATAAATTTAGCTTAGTTGCTGAATATCACCTCTCCAAACATAGAGTTCAGGTT---GGGGC-AAA--TAAAAAATTGTATAAAACAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817058 105 -   2996164 -AAAAGAAA---------------------AAGGAAC-----AAATTATACATAAATTTAGCTTAGTTGCTGAATATCACCTCTCCAAACATAGAGTTCAGGTT---GGGGC-AAA--TAAAAAATTGTATAAAACAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567157 105 +    766320 -AAAAGAAA---------------------AAGGAAC-----AAATTATACATAAATTTAGCTTAGTTGCTGAAAATCACCTCTCCAAACATAGAGTTCAGGTT---GGGGC-AAA--TAAAAAATTGTATAAAACAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29023751 105 -  71996105 -AAAAGAAA---------------------AAGGAAC-----AAATTATACATAAATTTAGCTTAGTTGCTGAAAATCACCTCTCCAAACATAGAGTTCAGGTT---GGGGC-AAA--TAAAAAATTGTATAAAACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209314 105 +    290775 -AAAAGAAA---------------------AAGAAAC-----AAATTATACATAAATTTAGCTGAGTTGCTGAAAATCACCTCTCCAAACATAGAGTTCAGGTT---GGGGC-AAA--TAAAAAATTGTATAAAACTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659133 105 -   3067355 -AAAAGAAA---------------------AAGGAAC-----AAATTATACATAAATTTAGCTTAGCTGCTGAAAATCACCTCTCCAAACATAGAGTTCAGGTT---GGGGC-AAA--TAAAAAATTGTATAAAACAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      35929 104 +    132061 -aaaaaaaa---------------------aaaaaaa-----aaaTTATACATAAATTTAGCTTTG-TGCTGAAAATCACCTCTCCAAACATACAGTTCAGATT---GAGGC-AAA--TTAAAAATTGTGTAAAACGA
i calJac3.chrUn_GL286223   I 298 C 0
s cebCap1.NW_016107755v1     244685 131 -   1771730 -aaaaaaaataaacaaattatacattaattaaaaaaataaacaaattatacataaatTTAGCTTTGTTGCTGAAAATCACCTCTCCAAACATAGAGCTCAGATT---GAAGC-AAA--TTAAAAATTGTATAAAACAA
i cebCap1.NW_016107755v1   I 2 C 0
s aotNan1.NW_018509740v1     329534 105 -    457564 -AAACAAAA---------------------AAGAAAC-----AAATTATACATAAATTTAGCTTTGTTGCTGAAAATCACCTCTCCAAACATAGAGTTCAGATT---GAGGC-AAA--TTAAAAATTGTATAAAACAA
i aotNan1.NW_018509740v1   I 2 I 337
s micMur3.chr6               146216 105 + 123392446 -AAGAGAAA---------------------AATAAAT-----GAATTATACATAAATTTAACTTTGTTGCTAAAAATCACCTCTCCAA--ACAGAGTTCAGGCT---GGGGA-AAATTTAAAAAAGCATAGAAAGCAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     627568 104 +    730504 -AAGAGAAA---------------------AATAAAT-----GAATTATACATAAATTTAACTTTGTTACTAAAAATCTCCTCTCCAA--ACGGAGTTTAGGCT---GGGGA-AAA-TTAAAAAAGCATAGAAAGCAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           134177 104 +  18854210 -AAGAAAAA---------------------ATGAAAT-----TAATTATACATAAATTTAGATGTGTTGCTAAAAATCACTTCTCCAA-CATAAAGTTTGGGTT---GAGAA-AAA--TAAAAAAGCATAGAAAACAA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            62655  95 +    102524 AAGAATAAA---------------------AGGAAAC-----AAATCGTGTGTAAATTTAGCTGCCTTGCTAAAAATCACCCCTTCAATTATGGAGTTCGGGTTTAAGGTGC-AGA--CAATTA--------------
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57949304 2992 -  94987271 I
e canFam3.chr35            26248094 534 +  26524999 I

a score=40908.000000
s hg38.chr6_GL000254v2_alt   912953 3 +   4827813 AAA
s panTro5.chr6             29875861 3 + 175400573 AAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30110504 3 + 173848474 AAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909126 3 +   6154872 AAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74622163 3 + 122973662 AAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30106704 3 + 172585720 AAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770426 3 - 170955103 AAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817163 3 -   2996164 AAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567262 3 +    766320 AAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29023856 3 -  71996105 AAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209419 3 +    290775 AAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659238 3 -   3067355 AAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      36033 3 +    132061 AAA
i calJac3.chrUn_GL286223   C 0 I 322
s cebCap1.NW_016107755v1     244816 3 -   1771730 AAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     329976 3 -    457564 AAA
i aotNan1.NW_018509740v1   I 337 C 0
s micMur3.chr6               146321 3 + 123392446 AAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     627672 3 +    730504 AAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           134281 3 +  18854210 AAA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            62750 3 +    102524 AAG
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57949304 2992 -  94987271 I
e canFam3.chr35            26248094 534 +  26524999 I

a score=32940.000000
s hg38.chr6_GL000254v2_alt   912956 3 +   4827813 GGC-
s panTro5.chr6             29875864 3 + 175400573 GGC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30110507 3 + 173848474 GGC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909129 3 +   6154872 GGC-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74622166 3 + 122973662 GGC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30106707 3 + 172585720 GGC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770429 3 - 170955103 GGC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817166 3 -   2996164 GGC-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567265 3 +    766320 GGC-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29023859 3 -  71996105 GGC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209422 3 +    290775 GGC-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659241 3 -   3067355 GGC-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      36358 3 +    132061 GGC-
i calJac3.chrUn_GL286223   I 322 C 0
s cebCap1.NW_016107755v1     244819 3 -   1771730 GGC-
i cebCap1.NW_016107755v1   C 0 I 321
s aotNan1.NW_018509740v1     329979 3 -    457564 GGC-
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               146324 3 + 123392446 AGC-
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     627675 3 +    730504 AGC-
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           134284 3 +  18854210 AGT-
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            62753 3 +    102524 -GCT
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57949304 2992 -  94987271 I
e canFam3.chr35            26248094 534 +  26524999 I

a score=851622.000000
s hg38.chr6_GL000254v2_alt   912959 78 +   4827813 TA--AGAAATGGTACAAAAAACTCAGAGAACCACTACTTCACGTTTCCCAATAAAGCA--TCTTTTATATTTATAA--AAGTTA
s panTro5.chr6             29875867 80 + 175400573 TA--AGAAATGGTACAAAAAACTCAGAGAACCACTACTTCACGTTTCCCAATAAAGCATCTCTTTTATATTTATAA--AAGTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30110510 80 + 173848474 TA--AGAAATGGTACAAAAAACTCAGAGAACCACTACTTCACGTTTCCCAATAAAGCATCTCTTTTATATTTATAA--AAGTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909132 80 +   6154872 TA--AGAAATCGTACAAAAAACTCAGAGAACCACTACTTCACGTTTCCCAATAAAGCATCTTTTTTATATTTATAA--AAGTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74622169 80 + 122973662 TA--AGAAATGGTACAAAAACCTCAGAGAACCACTTCTTCACGTTTCCCAGTGAAGCATCTCTTTTATATTTATAA--AAGTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30106710 80 + 172585720 TA--AGAAATGGCACAAAAAACTCAGCGAACCACTACTTCATGTTTCCCAATAAAGCATCTCTTTTATATTTATAA--AAGTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770432 80 - 170955103 TA--AGAAATGGCACAAAAAACTCAGCGAACCACTACTTCATGTTTCCCAATAAAGCATCTCTTTTATATTTATAA--AAGTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817169 80 -   2996164 TA--AGAAATGGCACAAAAAACTCAGCGAACCACTACTTCATGTTTCCCAATAAAGCATCTCTTTTATATTTATAA--AAGTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567268 80 +    766320 TA--AGAAATGGTACAAAAAACTCAGCGAACCACTACTTCATGTTTCCCAATAAAGTATCTCTTTTATATTTGTAA--AAGTTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29023862 80 -  71996105 TA--AGAAATGGTACAAAAAACTCAGCAAACCACTACTTCATGTTTCCCAATAAAGCATCTCTCTTATATTTGTCA--AAGTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209425 80 +    290775 TA--AGAAATGGTACAAAAAACTCAGCGAACCACTACTTCATGTTTCCCAATAAAGTGTCTCTTTTATATTTGTAA--AAGTTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659244 80 -   3067355 TA--AGAAATGGTACAAAAAACTCAGCGAACCGCTACTTCATGTTTCCCAATAAAGCATCTCTTTTATATTTATAA--AAGTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      36361 80 +    132061 TA--AGAAATGGTTCAAAGAATTCAGAGAACCACTACTTCATGTTTCCCAATAAAGCATCTATTTTATATTAATAA--AAGTTA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     245143 80 -   1771730 TA--AGAAATGGTTCAAAGAACGCAGAGAACCACTACTTCATGTTTCCCAATAAAGCATCTATTTTATATTAATAA--GAATTA
i cebCap1.NW_016107755v1   I 321 C 0
s aotNan1.NW_018509740v1     329982 80 -    457564 TA--AGAAATGGTTCAAAGAACTCAGAGAACCACTACTTCATGTTTCCCAATAAAGCATCTATTTTATATTAATAA--AAGTTA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               146327 80 + 123392446 TAC-AGAAATGGTAGAGAAAACTTAAAGAACCACCAATTCATAGTTTTTAATAAAGCAATTATGTTATATTTATA---AAACCA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     627678 80 +    730504 TAC-AGAAATGGTAGAGAAAACTTAGAGAACCACTAATTCATCGTTCCTAATAAAGCAATTATGTTATATTTATA---AAACGA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           134287 83 +  18854210 TAT-AGAAATGCTAGAGAAATTTTAGAGACCCACTAATTCATAGTTCCTAAAAAAGCAATTATTTTATATTTATAATCAAGCCA
i otoGar3.GL873550         C 0 I 239
s dasNov3.JH582591            62756 66 +    102524 --GCTGAAACGGCAGAGGAAACTTAGAGAAGCAC-AGATCACAGCTGCTACTGAAACACCCA---------AATAC--AA----
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57949304 2992 -  94987271 I
e canFam3.chr35            26248094 534 +  26524999 I

a score=781059.000000
s hg38.chr6_GL000254v2_alt   913037 61 +   4827813 AGCCTGCATATCT-CTGCCCCCAAttgcagcagaaacacctgaaaaagaatgcc-------agtctggt--------------
s panTro5.chr6             29875947 61 + 175400573 AGCCTGCATATCT-CTGCCCCCAAttgtagcagaaacacctgaaaaagaatgcc-------agtctggt--------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30110590 61 + 173848474 AGCCTGCATATCT-CTGCCCCCAAttgtagcagaaacacctgaaaaagaatgcc-------agtctggt--------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909212 61 +   6154872 AGCCTGCATATCT-CTGCCCCCAAttgcagcagaaacacctgaaaaagaatgcc-------agtctggt--------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74622249 61 + 122973662 AGCCTGCATATCT-CTGCCCCCAACTGCAGCAGAAACACCTGAAAAAGAATGCC-------AGTCTGgt--------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30106790 61 + 172585720 AGCCTGCATATCT-CTGCCCCCAACTGCAGCAGAAACACCTGAAAAAGAATGCC-------AGTCTGgt--------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770512 61 - 170955103 AGCCTGCATATCT-CTGCCCCCAACTGCAGCAGAAACACCTGAAAAAGAATGCC-------AGTCTGgt--------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817249 61 -   2996164 AGCCTGCATATCT-CTGCCCCCAACTGCAGCAGAAACACCTGAAAAAGAATGCC-------AGTCTGgt--------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567348 61 +    766320 AGCCTGCACATCT-CTGCCCCCAACTGCAGCAGAAACACCTGAAAAAGAATGCC-------AGTCTGgt--------------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29023942 61 -  71996105 AGCCTGCATATCT-CTGCCCCCAACTGCAGCAGAAACACCCGAAAAAGAATGCC-------AGCCTGgt--------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209505 61 +    290775 AGCCTGCACATCT-CTGCCCCCAACTGCAGCAGAAACACCTGAAAAAGAATGCC-------AGTCTGgt--------------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659324 61 -   3067355 AGCCTGCATATCT-CTGCCCCCAACTGCAGCAGAAACACCTGAAAAAGAACGCC-------AGTCTGgt--------------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      36441 61 +    132061 CACTTGCATATCT-CTGCCCCCAACTGCAACAGAAACACCTGAAAAAGAATGCC-------AGTCTGgt--------------
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     245223 61 -   1771730 CGCTTGCATATCT-CTGCCCCCAACTGCAAcagaaacacctgaaaaagaatgcc-------agtctggt--------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     330062 61 -    457564 CGCTTGCATATCT-CTGCCCCCAACTGCAAcagaaacacctgaaaaagaatgcc-------agtctggt--------------
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               146407 61 + 123392446 AGCTAGCATATTG-CCATCCCCAACTGCAGCAGAAACATCTGGAAAAGAATGCC-------AGTCTGGT--------------
i micMur3.chr6             C 0 I 503
s proCoq1.NW_012152574v1     627758 61 +    730504 AGCCAGCATATTG-CCATTCCCAACTGCAGCAGAAACATCTGGAAAAGAATGCC-------AGTCTGGT--------------
i proCoq1.NW_012152574v1   C 0 I 3
s otoGar3.GL873550           134609 61 +  18854210 AGCCAGCATATTG-CTATCCTCAGCTACAGCAGAAACATCTGGAAAACAATGCC-------AGTCTTGT--------------
i otoGar3.GL873550         I 239 I 29
s dasNov3.JH582591            62822 80 +    102524 GGCCAGGATGCCCGTCGGCCCTGACCGCAGCAG---TGCCTGGAAACGGATGCCCACCCAGAGCCTGGGCTCAGGCTGCAGGT
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57949304 2992 -  94987271 I
e canFam3.chr35            26248094 534 +  26524999 I

a score=1554565.000000
s hg38.chr6_GL000254v2_alt   913098 160 +   4827813 cttg---ctctgacaatggttttctgactgacc----ttgagcctgtcacaacccgtctggcctcaatttcatcaactgtaaaataagaataaaactatttgatatctt-taactcacatactattgtga-gaaataaatacaatcatagacaaatgttttcagaatgt
s panTro5.chr6             29876008 160 + 175400573 cttg---ctctgacaatggttttctgactgacc----ttgagcctgtcacaacccgtctggcctcaatttcatcaactgtaaaataggaataaaactatttgatatctt-taactcacatactattgtga-gaaataaatacaatcatagacaaatgttttcagaatgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30110651 160 + 173848474 cttg---ctctgacaatggttttctgactgacc----ttgagcctgtcacaacccgtctggcctcaatttcatcaactgtaaaataggaataaaactatttgatatctt-taactcacatactattgtga-gaaataaatacaatcatagacaaatgttttcagaatgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909273 160 +   6154872 cttg---ctctgacaatggttttctgactgacc----ttgagcctgtcacaacccgtctggcctcaatttcatcaactgtaaaataggaataaaactatttgatatctt-taactcacatactattgtga-gaaataaatacaatcatagacaaatgttttcagaatgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74622310 160 + 122973662 cttg---ctctgacaatggttttctgactgacc----ttgagcctgtcacaacccgtctggcctcaatttcatcatctgtaaaatacgaataaaactatttgatctctt-taactcacatactattgtga-gaaataaatacaatcatagacaaatgttttcagagtgt
i nomLeu3.chr1a            C 0 I 311
s rheMac8.chr4             30106851 164 + 172585720 cttg---ccctgacaacggttacctgactgaccttgattgagcctgtcacaacccgtctggcctcaatttcatcatctgtaaaataggaataaaactatttgatctcct-taactcacatactattgtga-gaaataaatacaatcatagacagatgtttttggaatgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770573 164 - 170955103 cttg---ccctgacaacggttacctgactgaccttgattgagcctgtcacaacccgtctggcctcaatttcatcatctgtaaaataggaataaaactatttgatctcct-taactcacatactattgtga-gaaataaatacaatcatagacagatgtttttggaatgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817310 164 -   2996164 cttg---ccctgacaacggttacctgactgaccttgattgagcctgtcacaacccgtctggcctcaatttcatcatctgtaaaataggaataaaactatttgatctcct-taactcacatactattgtga-gaaataaatacaatcatagacagatgtttttggaatgt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567409 164 +    766320 cttg---ccctgacaacggttacctgactgaccttgattgagcctgtcacaacccatctggcctcaatttcatcatctgtaaaataggaataaaactatttgatctcct-taactcacatactattgtga-gaaataaatacaatcatagacagatgttttcggaatgt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024003 164 -  71996105 cttg---ccctgacaacggttacctgactgaccttgattgagcctgtcacaacccatctggcctcaatttcatcatctgtaaaataggaataaaactatttgatctcct-taactcacatactattgtga-gaaataaatacaatcatagacagatgttttcggaatgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209566 164 +    290775 cttg---ccctgacaacggttacctgactgaccttgattgagcctgtcacaacccatctggcctcaatttcatcatctgtaaaataggaataaaactatttgatctcct-taactcacatactattgtga-gaaataaatacaatcatagacagatgttttcggaatgt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659385 163 -   3067355 cttg---ccctgacaacggttacctgactgaccttgattgagcctgtcacaatccatc-ggccttaatttcatcatctgtaaaataggaataaaactatttgatctcct-taactcacatactattgtga-gaaataaatacaagtatagacagatgttttcagaatgt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      36502 157 +    132061 cttg---ccctgacaa---tcacctgactgacc----ttgagcctgtcacaacccatctggcctcaatttcatcatctgcaaaacaggaataaaactatttgatcgcct-tatctcacatattactgtga-gaaacacatacaatcatagacaaatggtttcagaatgc
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     245284 155 -   1771730 cttg---ccctgataa---tcacctgactgacc----ttgagcccgtaacaacccatctggcctcaatttcatcatctgcaaaacaggaataaaactatctgatcgcct-tatctcacatactactgcga-gaaacaaatACTATC--AGACCAATGGTTTCAGAATGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     330123 156 -    457564 cttg---cccttacaa---tcacctgactgacc----ttgagcccatcacaacccatctggcctcaatttcatcatctgtaaaacaggaataaaactatttgatcgcct-tatctcacatactactgtga-gaaacaaatacaatcataaac-aatggtttcagaatgc
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     627822 138 +    730504 CTTG---CCCtggca----------------------ttgggcctatcataagccctccagcctc-ctttc---atctgcaaaatggacataaaactatttgatcggct-tatcctacatactattgtga-gaaacaaatacaatcatagaaaaatgttttgaggatgt
i proCoq1.NW_012152574v1   I 3 C 0
s otoGar3.GL873550           134699 144 +  18854210 TTTGAATTTCGAATG----------------------TTGGACCTATGGTTaccgttctggcttcaccttcattatctgttaattgggcagaaaaatatttgatctgttctcccccacctactat--tga-caaacaaatacaatcatataaaaatgttttgagaatgt
i otoGar3.GL873550         I 29 C 0
s dasNov3.JH582591            62902 131 +    102524 CTTG---CCCTGACCACAGTCATCTGTCTGGCC--------ACTTGCC-------------CATCAATTTC------TGTAAGACAGAATGAAAAGGATTTAATTTCCA-CAGATCAC-------TGTGAGGGAAAAAACACAATCATAGATAATCGTTTTGAAGGTGT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               146468 503 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e canFam3.chr35            26248094 534 +  26524999 I

a score=1232786.000000
s hg38.chr6_GL000254v2_alt   913258 123 +   4827813 gaaaatgctataGGAACACA------CT-TTTTCTCCAGTGGCTGGCATAAAAGTGTTGGTATGC--TATACCACCAAGTCATTAGATATGAGTTAATTTCTGGATTACTGT-TTCAGTAAGAATAAGCTCTA
s panTro5.chr6             29876168 123 + 175400573 gaaaatgctataGGAACACA------CT-TTTTCTCCAGTGGCTGGCATAAAAATGTTGGTATGC--TATACCACCAAGTCATTAGATATGAGTTAATTTCTGGATTACTGT-TTCAGTAAGAATAAGCTCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30110811 123 + 173848474 gaaaatgctataGGAACACA------CT-TTTTCTCCAGTGGCTGGCATAAAAATGTTGGTATGC--TATACCACCAAGTCATTAGATATGAGTTAATTTCTGGATTACTGT-TTCAGTAAGAATAAGCTCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909433 123 +   6154872 gaaaatgctataGGAACACA------CT-TTTTCTCCAGTGGCTGGCATAAAAGTGTTGGTATGC--TATACCACCAAGTCATTAGATATGAGTTAATTTCTGGATTACTGT-TTCAGTAAGAATAAGCTCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74622781 123 + 122973662 gaaaaTGCTATAGGAACACA------CT-TTTTCTCCAGTGGTTGGCATAAAAGTGTTGGTATGC--TATACCACCAAGTCACTAGATATGAGTTAATTTCTGGATTACTGT-TTCAGTAAGAATAAACTCTA
i nomLeu3.chr1a            I 311 C 0
s rheMac8.chr4             30107015 122 + 172585720 gaaaatgctata-gaaCACA------CT-TTTTCTCCAGTGACTGGCATTAAAGTGTTGGTATGC--TATACCACCAAGTCATTAGATGTGAGTTAATTTCTGGATTACTGT-GTCAGTAAGAATAAACTCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770737 122 - 170955103 gaaaatgctata-gaaCACA------CT-TTTTCTCCAGTGACTGGCATTAAAGTGTTGGTATGC--TATACCACCAAGTCATTAGATGTGAGTTAATTTCTGGATTACTGT-GTCAGTAAGAATAAACTCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817474 122 -   2996164 gaaaatgctata-gaaCACA------CT-TTTTCTCCAGTGACTGGCATTAAAGTGTTGGTATGC--TATACCACCAAGTCATTAGATGTGAGTTAATTTCTGGATTACTGT-GTCAGTAAGAATAAACTCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567573 123 +    766320 gaaaatgctataGGAACACA------CT-TTTTCTCCAGTGACTGGCATTAAAGTGTTGGTATGC--TATACCACCAAGTCATTAGATGTGAGTTAATTTCTGGATTACTGT-GTCAGTAAGAACAAACTCTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024167 123 -  71996105 gaaaatgctataGGAACACA------CT-TTTTCTCCAGTGACTGGCATCAAAGTGTTGGTATGC--TATACCACCAAGTCATTAGATGTGAGTTAATTTCTGGATTACTGT-GTCAGTAAGAATCAACTCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209730 123 +    290775 gaaaatgctataGGAACACA------CT-TTTTCTCCAGTGACTGGCATTAAAGTGTTGGTATGC--TATACCACCAAGTCATTAGATGTGAGTTAATTTCTGGATTACTGT-GTCAGTAAGAACAAACTCTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659548 123 -   3067355 gaaaatgctataGGAACACA------CT-TTTTCTCCAGTGACTGGCATTAAAGTGTTGGTATGC--TATACCACCAAGTCATTAGATGTGAGTTAATTTCTGGATTACTGT-TTCAGTCAGAATAAACTCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      36659 115 +    132061 --aaaagctatagaaaCACA------CT-TTTTCTCCAGTGTCTGGCATTAAAGTGTTGGAATGC--TATACCA------CATGAGATGTGAGTTAATCTCTGGATTATTGT-TTCAGTAAGAATAAACTCTA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     245439 115 -   1771730 --AAATGCTATAGGAGCACA------CT-TTTTCTCCAGTGGCTGGCATTAAAGTGTTGGAATGC--TATGCCA------CATTTGATGTGAGTTAATCTCTGGATTACTGT-TTCAGTAAGAATAAACTCTA
i cebCap1.NW_016107755v1   C 0 I 1652
s aotNan1.NW_018509740v1     330279 115 -    457564 --aaatgctataGGAACACA------CT-TTTTCTCCAGTGGCTGGCATTAAAGTGTTGGAATGC--TATACCA------CATTAGATGTGAGTTAATCTCTGGATTACTGT-TTCAGTAAGAATAAACTCTA
i aotNan1.NW_018509740v1   C 0 I 918
s proCoq1.NW_012152574v1     627960 128 +    730504 aaaAATTCCGTATGAGCACAAATTAGTA-TTTCCGTTATTGATTGGCATTCAAATATTGGTATGT--TATACCACGAAGCTATTAGATGTGAGTTAATCAATGGATTACTAT-CTCAGTAAGGAT-AACACTG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           134843 129 +  18854210 aaaaattccatatgaacacaaattagta-ttTCCTTTATTGACTGGGATTCAAAAGTCAATATGT--TATACCACCAAGCCATTATATGTGA-TTAATGGATTAATTATTGGATTTAGTAAGCATAAATGCTG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            63033 117 +    102524 AAAAAT-------GAACACA------TTATTTCCTCCATGAGCTGGCGTTCACATGCTGGTATGTGGCACACGACCAAGTCCTTACGTGGGAGTTGATCGGCGGGTGACTAT-TTCGGTCCTGACACACCG--
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               146468 503 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e canFam3.chr35            26248094 534 +  26524999 I

a score=8323.000000
s hg38.chr6_GL000254v2_alt   913381 1 +   4827813 C
s panTro5.chr6             29876291 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30110934 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909556 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74622904 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30107137 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770859 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817596 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567696 1 +    766320 C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024290 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209853 1 +    290775 C
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659671 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      36774 1 +    132061 C
i calJac3.chrUn_GL286223   C 0 I 338
s proCoq1.NW_012152574v1     628088 1 +    730504 T
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           134972 1 +  18854210 T
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            63150 1 +    102524 C
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               146468 503 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e canFam3.chr35            26248094 534 +  26524999 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I

a score=859234.000000
s hg38.chr6_GL000254v2_alt   913382 106 +   4827813 ACAACTTCAGCAAGTGATGTTG-GTATGTCATCCACAAAGTTCTATCACCCTATTCCATAGCATACCCCTGTTGAACTTCCCACATCCCTGTCTTCCCTTAGCTTCC
s panTro5.chr6             29876292 106 + 175400573 ACAACTTCAGCAAGTGATGTTG-GTATGTCATCCACAAAGTTCTATCACCCTATTCCATAGCATACCCCTGTTGAACTTCCCACATCCCTGTCTTGCCTTAGCTTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30110935 106 + 173848474 ACAACTTCAGCAAGTGATGTTG-GTATGTCATCCACAAAGTTCTATCACCCTATTCCATAGCATACCCCTGTTGAACTTCCCACATCCCTGTCTTGCCTTAGCTTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909557 106 +   6154872 ACAACTTCAGCAAGTGATGTTG-GTATGTCATCCACAAAGTTCTATCACCCTATTCCATAGCATACCCCTGTTGAACTTCCCACATCCCTGTCTTCCCTTAGCTTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74622905 106 + 122973662 ACAACTTCAGCAAGTGATGTTG-GTATGTCATCCACAAAGTTCTATCACCCTATTCCATAGCATACCCCTGTTGAACTTCCCACATCCCTGTCTTCCCTTAGCTTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30107138 106 + 172585720 ACAACTTCAGCAAGTGATGTTG-GTATGTCATCCACAAAATTCTATCACCCTATTCCATAGCATACCCCTGTTGAACTTTCCACATCTCTGTCTTCCCTTAGCTTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770860 106 - 170955103 ACAACTTCAGCAAGTGATGTTG-GTATGTCATCCACAAAATTCTATCACCCTATTCCATAGCATACCCCTGTTGAACTTTCCACATCTCTGTCTTCCCTTAGCTTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817597 106 -   2996164 ACAACTTCAGCAAGTGATGTTG-GTATGTCATCCACAAAATTCTATCACCCTATTCCATAGCATACCCCTGTTGAACTTTCCACATCTCTGTCTTCCCTTAGCTTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567697 106 +    766320 ACAACTTCAGCAAGTGATGTTG-GTATGTCATCCACAAAGTTCTATCACCCTATTCCATAGCATACCCCTGTTGAACTTCCCACATCTCTGTCTTCCCTTAGCTTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024291 106 -  71996105 ACAACTTCAGCAAGTGATGTTG-GTACGTCATCCACAAAGTTCTATCACCCTACTCCATAGCATACCCCTGTTGAACTTCCCACATCTCTGTCTTCCCTTAGCTTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209854 106 +    290775 ACAACTTCAGCAAGTGATGTTG-GTATGTCATCCACAAAGTTCTATCACCCTATTCCATAGCATACCCCTGTTGAACTTCCCACATCTCTGTCTTCCCTTAGCTTCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659672 105 -   3067355 ACAACTTCAGCAAGTGATGTTG-GTAT-TCATCCACAAAGTTCTATCACCCTATTCCATAGCATACCCCTGTTGAACTTCCCACATCCCTGTCTTCCCTTAGCTTCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      37113  99 +    132061 ACAACTTCAGCCAGTGATGTTG-GTACGTCATCCACAGAGTTCTCTCCCGCTATTCCACAGCATACCCCTGTTGAATTTCCCACATGCCTGTCTTCCCTT-------
i calJac3.chrUn_GL286223   I 338 C 0
s proCoq1.NW_012152574v1     628089 102 +    730504 ACAGCTTTAGCAAGTAATTTTG-GTGTGTCGTCCACAAAGTACTCTCACCCTAGTCCTTGCCATATCCCTGTTGAACTTCTGGCATCCCTGTCTTccctgcac----
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           134973  85 +  18854210 ACAACTTTAGCAGGTAATTTTG-GTATGTCG--------------TCACCCTATTCCTCGGCGTTCCC----TGAACTTCTGGCATCCTTGTCTTCCCTGCACT---
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            63151  80 +    102524 ACAGCTTCAGCCAATGGAATCGTGCAGGTC-CCCACG---------CACCCGCTCACCTCGCG-----------------CCACATTCCCGTCTTCCCTGCGCTTGC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               146468 503 + 123392446 I
e mm10.chr17               57949304 2992 -  94987271 I
e canFam3.chr35            26248094 534 +  26524999 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I

a score=110002.000000
s hg38.chr6_GL000254v2_alt   913488 12 +   4827813 TGTATCCAACCT
s panTro5.chr6             29876398 12 + 175400573 TGTATCCAACCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111041 12 + 173848474 TGTATCCAACCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909663 12 +   6154872 TGTATCCAACCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623011 12 + 122973662 TGTGTCCAACCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30107244 12 + 172585720 TGTGTCCAACCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770966 12 - 170955103 TGTGTCCAACCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817703 12 -   2996164 TGTGTCCAACCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567803 12 +    766320 TGTGTCCAACCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024397 12 -  71996105 TGTGTCCAACCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209960 12 +    290775 TGTGTCCAACCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659777 12 -   3067355 TGTGTCCAACCT
i colAng1.NW_012115566v1   C 0 C 0
s micMur3.chr6               146971 12 + 123392446 TGTGTCCAACCT
i micMur3.chr6             I 503 C 0
s proCoq1.NW_012152574v1     628191 12 +    730504 tgtgtccaacct
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           135058 11 +  18854210 -GTGTCCAACCA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            63231 11 +    102524 TTTGTCCAAGT-
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57949304 2992 -  94987271 I
e canFam3.chr35            26248094 534 +  26524999 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I
e calJac3.chrUn_GL286223      37212  0 +    132061 C

a score=199060.000000
s hg38.chr6_GL000254v2_alt   913500 18 +   4827813 CAGCGCAATAGCTCAGTT
s panTro5.chr6             29876410 18 + 175400573 CAGCGCAATAGCTCAGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111053 18 + 173848474 CAGCGCAATAGCTCAGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909675 18 +   6154872 CAGCGCAATAGCTCAGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623023 18 + 122973662 CAGCGCAATAGCTCAGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30107256 18 + 172585720 CAGCGCAATAGCTCAGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770978 18 - 170955103 CAGCGCAATAGCTCAGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817715 18 -   2996164 CAGCGCAATAGCTCAGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567815 18 +    766320 CAGCGCAATAGCTCAGTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024409 18 -  71996105 CAGCGCAATAGCTCAGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209972 18 +    290775 CAGCGCAATAGCTCAGTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659789 18 -   3067355 CAGCGCAATAGCTCAATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      37212 17 +    132061 -AGCGCAATAGCTCAGTT
i calJac3.chrUn_GL286223   C 0 C 0
s micMur3.chr6               146983 18 + 123392446 CAGCGCAATAATTTAGTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     628203 18 +    730504 cagagcaataattcagtt
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           135069 18 +  18854210 CAGAGCAATAATTCAATT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57952296 18 -  94987271 CAGCTCAGTTACTTAATT
i mm10.chr17               I 2992 C 0
s dasNov3.JH582591            63242 18 +    102524 CGGAGCAATGAGTGAGAG
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26248094 534 +  26524999 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I

a score=734703.000000
s hg38.chr6_GL000254v2_alt   913518 73 +   4827813 TGACCATTAGATGGTACCAGTTACAAGGCAAACTTAGGTCCCTTCAGAAACTG----AGCATTT---CTAAAA-----AGCAAAT
s panTro5.chr6             29876428 73 + 175400573 TGACCATTAGATGGTACCAGTTACAAGGCAAACTTAGGTCCCTTCAGAAACTG----AGCATTT---CTAAAA-----AGCAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111071 73 + 173848474 TGACCATTAGATGGTACCAGTTACAAGGCAAACTTAGGTCCCTTCAGAAACTG----AGCATTT---CTAAAA-----AGCAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909693 73 +   6154872 TGACCATTAGATGGTACCAGTTACAAGGCAAACTTAGGTCCCTTCAGAAACTG----AGCATTT---CTAAAA-----AGCAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623041 73 + 122973662 TGACCATTAGATGGTACTAGTTACAAGGCAAACTTAGGTCCTTTCAGAAACTA----AGCATTT---CTAAAA-----AGCAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30107274 67 + 172585720 TGACCACTAGATGGTACTAGTTACAAGGCAAATTTAGG----TTCAGAAAC------AGCATTT---CTAAAA-----AGCAAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29770996 67 - 170955103 TGACCACTAGATGGTACTAGTTACAAGGCAAATTTAGG----TTCAGAAAC------AGCATTT---CTAAAA-----AGCAAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817733 67 -   2996164 TGACCACTAGATGGTACTAGTTACAAGGCAAATTTAGG----TTCAGAAAC------AGCATTT---CTAAAA-----AGCAAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567833 67 +    766320 TGACCACTAGATGGTACTAGTTACAAGGCAAATTTAGG----TTCAGAAAC------AGCATTT---CTAAAA-----AGCAAGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024427 67 -  71996105 TGACCACTAGATGGTACTAGTTACAAGGCAAATTTAGG----TTCAGAAAC------AGCATTT---CTAAAA-----AGCAAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     209990 67 +    290775 TGACCACTAGATGGTACTAGTTACAAGGCAAATTTAGG----TTCAGAAAC------AGCATTT---CTAAAA-----AGCAAGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659807 71 -   3067355 TGACCATTAGATGGTACTAGTTACAAGGCAAATTTAGGTCCCTTCAGAAAC------AGCATTT---CTAAAA-----AGCAAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      37229 73 +    132061 TGACCATTAGATGGTACTAGTTACAAGGCAAACTTAGGTCCCTTCAGAATTTG----AGCATTT---CTAAGA-----AGCAAAT
i calJac3.chrUn_GL286223   C 0 C 0
s micMur3.chr6               147001 72 + 123392446 TGACCACTAGATGGCACTAGTTACAAGGCAAGTTTAGGT-CTGTCAGAAATTG----AGCATTT---CTAAGG-----AGCAAAT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     628221 73 +    730504 tgaccactagatggcactagttacaaggtaagtttaggtccctttagaaattg----agcattt---ctaagg-----AGCAAAT
i proCoq1.NW_012152574v1   C 0 I 44
s otoGar3.GL873550           135087 73 +  18854210 TGACCATTAGATGGCACTAGTTACCAGGCAACCTTAGGTCCTTTCCCAAATTT----AGCATTT---CTAAGG-----AGCAAAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57952314 75 -  94987271 AGTCCATCAGATGGCATGAGTTACATGGAAACTCTAAATC--TTTAGAAAGGGACCCACCAAGT---TTGAAG-----AGCAAAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26248628 76 +  26524999 TGACCGTTAGATGGCGCCAGTGACCAGCGAGCCTTCCATCCCTCCCTAAATTG----AGTATTTTCCCTAAGG-----AGCTGCT
i canFam3.chr35            I 534 C 0
s dasNov3.JH582591            63260 78 +    102524 TGACCATGAGATGGCACTAGTTACAAGGCGAGCTGATGTCTCCTCAGCTACCG----CGCTTTT---CCCAAACTAGGAGCAAAT
i dasNov3.JH582591         C 0 C 0
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I

a score=6086.000000
s hg38.chr6_GL000254v2_alt   913591 1 +   4827813 A
s panTro5.chr6             29876501 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111144 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909766 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623114 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30107341 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29771063 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817800 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567900 1 +    766320 A
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024494 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     210057 1 +    290775 A
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659878 1 -   3067355 A
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      37302 1 +    132061 G
i calJac3.chrUn_GL286223   C 0 C 0
s micMur3.chr6               147073 1 + 123392446 A
i micMur3.chr6             C 0 I 5303
s otoGar3.GL873550           135160 1 +  18854210 G
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57952389 1 -  94987271 G
i mm10.chr17               C 0 I 1
s canFam3.chr35            26248704 1 +  26524999 G
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            63338 0 +    102524 C
e proCoq1.NW_012152574v1     628294 44 +    730504 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I

a score=82575.000000
s hg38.chr6_GL000254v2_alt   913592 8 +   4827813 TTTTTTCA
s panTro5.chr6             29876502 8 + 175400573 TTTTTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111145 8 + 173848474 TTTTTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909767 8 +   6154872 TTTTTTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623115 8 + 122973662 TTTTTTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30107342 8 + 172585720 TTTTTTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29771064 8 - 170955103 TTTTTTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817801 8 -   2996164 TTTTTTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567901 8 +    766320 TTTTTTCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024495 8 -  71996105 TTTTTTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     210058 8 +    290775 TTTTTTCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659879 8 -   3067355 TTTTTTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      37303 8 +    132061 TTTTTTCA
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           135161 8 +  18854210 CTTTCTCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57952391 8 -  94987271 TTTTTTCA
i mm10.chr17               I 1 C 0
s canFam3.chr35            26248705 8 +  26524999 CTGCTTCT
i canFam3.chr35            C 0 I 205
s dasNov3.JH582591            63338 8 +    102524 CTTTTCCA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e proCoq1.NW_012152574v1     628294 44 +    730504 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I

a score=128491.000000
s hg38.chr6_GL000254v2_alt   913600 16 +   4827813 GGTTTGT-TTGTAACTT
s panTro5.chr6             29876510 16 + 175400573 GGTTTGT-TTGTAACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111153 16 + 173848474 GGTTTGT-TTGTAACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909775 16 +   6154872 GGTTTGT-TTGTAACTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623123 16 + 122973662 GGTTTGT-TTGTAACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30107350 16 + 172585720 GGTTTGT-TTGTAGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29771072 16 - 170955103 GGTTTGT-TTGTAGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817809 16 -   2996164 GGTTTGT-TTGTAGCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567909 16 +    766320 GGTTTGT-TTGTAGCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024503 16 -  71996105 GGTTTGT-TTGTAGCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     210066 16 +    290775 GGTTTGT-TTGTAGCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659887 16 -   3067355 GGTTTGT-TTGTAACTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      37311 12 +    132061 G----GT-GTGTAACTT
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           135169 17 +  18854210 GGTTTGTCTTGTAATTT
i otoGar3.GL873550         C 0 I 290
s mm10.chr17               57952399 16 -  94987271 GTTTTGT-TTGTCATAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26248918 16 +  26524999 GGTTGGT-TTGGGACTT
i canFam3.chr35            I 205 I 11
s dasNov3.JH582591            63346 11 +    102524 -GGTTGT-TTGTT----
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e proCoq1.NW_012152574v1     628294 44 +    730504 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I

a score=48057.000000
s hg38.chr6_GL000254v2_alt   913616 7 +   4827813 AAACAAC
s panTro5.chr6             29876526 7 + 175400573 AAACAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111169 7 + 173848474 AAACAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909791 7 +   6154872 AAACAAC
i gorGor5.CYUI01015250v1   C 0 I 1
s nomLeu3.chr1a            74623139 7 + 122973662 AAACAAC
i nomLeu3.chr1a            C 0 I 3
s rheMac8.chr4             30107366 7 + 172585720 AAACAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29771088 7 - 170955103 AAACAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817825 7 -   2996164 AAACAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567925 7 +    766320 AAACAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024519 7 -  71996105 AAACAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     210082 7 +    290775 AAACAAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659903 7 -   3067355 AAACAAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      37323 7 +    132061 AAACaaa
i calJac3.chrUn_GL286223   C 0 C 0
s mm10.chr17               57952415 5 -  94987271 --ACATT
i mm10.chr17               C 0 I 4
s canFam3.chr35            26248945 6 +  26524999 aaaaaa-
i canFam3.chr35            I 11 C 0
s dasNov3.JH582591            63357 7 +    102524 TTATAAC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e proCoq1.NW_012152574v1     628294 44 +    730504 I
e otoGar3.GL873550           135186 290 +  18854210 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I

a score=23264.000000
s hg38.chr6_GL000254v2_alt   913623  7 +   4827813 ---------AAAAAAA
s panTro5.chr6             29876533  7 + 175400573 ---------AAAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111176  7 + 173848474 ---------AAAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909799  7 +   6154872 ---------AAAAAAA
i gorGor5.CYUI01015250v1   I 1 C 0
s nomLeu3.chr1a            74623149  7 + 122973662 ---------AAAAAAA
i nomLeu3.chr1a            I 3 C 0
s rheMac8.chr4             30107373  6 + 172585720 ----------AAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29771095  6 - 170955103 ----------AAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817832  6 -   2996164 ----------AAAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567932  6 +    766320 ----------AAAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024526  6 -  71996105 ----------AAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     210089  6 +    290775 ----------AAAAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659910  6 -   3067355 ----------AAAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      37330  7 +    132061 ---------aaaaaaa
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           135476  7 +  18854210 ---------AAAAAAA
i otoGar3.GL873550         I 290 C 0
s mm10.chr17               57952424  6 -  94987271 ---------CAAAAA-
i mm10.chr17               I 4 C 0
s canFam3.chr35            26248951  7 +  26524999 ---------aaaaaaa
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            63364 13 +    102524 TATTTTTTGTAAA---
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e proCoq1.NW_012152574v1     628294 44 +    730504 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I

a score=514633.000000
s hg38.chr6_GL000254v2_alt   913630 44 +   4827813 TCATTATTTTAAAGGCCATATGCTCACTGTGAAAATATATCAGG
s panTro5.chr6             29876540 44 + 175400573 TCATTATTATAAAGGCCATATGCTCACTGTGAAAATATATCAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111183 44 + 173848474 TCATCATTATAAAGGCCATATGCTCACTGTGAAAATATATCAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909806 44 +   6154872 TCATTATTATAAAGGCCATATGCTCACTGTGAAAATATATCAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623156 44 + 122973662 TCATTATTATAAAGGCCATATGCTCACTGTGAAAATATATCAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30107379 44 + 172585720 TCATTATTATAAAGGGCATATGCTCACTGTGAAAATATATCAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29771101 44 - 170955103 TCATTATTATAAAGGCCATATGCTCACTGTGAAAATATATCAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817838 44 -   2996164 TCATTATTATAAAGGCCATATGCTCACTGTGAAAATATATCAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567938 44 +    766320 TCATTATTATAAAGGCCATATGCTCACTGTGAAAATATATCAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024532 44 -  71996105 TCATTATTATAAAGGCCATATGCTCACTGTGAAAATATATCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     210095 44 +    290775 TCATTATTATAAAGGCCATATGCTCACTGTGAAAATATATCAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659916 44 -   3067355 TCATTATTATAAAGGCCATATGCTCACTGTGAAAATATATCAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      37337 43 +    132061 ttattattataaaGGCCATATGCTCACTGTGAAAA-ACATCAGG
i calJac3.chrUn_GL286223   C 0 C 0
s proCoq1.NW_012152574v1     628338 44 +    730504 TCATCATTATAAAGGCCATATGCTCAGTGTGAAAATATATCAGG
i proCoq1.NW_012152574v1   I 44 I 2844
s otoGar3.GL873550           135483 44 +  18854210 TCATTATTACAAAGTCCACTTACTCACTGTGAAAATATATTAAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57952430 44 -  94987271 TTATCATTATGAACTCCATATGTTCAGTGTGAAAATGTGTCAAA
i mm10.chr17               C 0 I 2
s canFam3.chr35            26248958 44 +  26524999 aaaGGATTATAAAGACCATATACTCACTGTCAAAATATTTCAAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            63377 44 +    102524 TCATTTTTATAAAAGCCATATGCTCACTGTGCAAATATATCATA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I

a score=173769.000000
s hg38.chr6_GL000254v2_alt   913674 23 +   4827813 TGGTGTATGAAAT-AATAAGTAAA
s panTro5.chr6             29876584 23 + 175400573 TGGTGTATGAAAT-AATAAGTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111227 23 + 173848474 TGGTGTATGAAAT-AATAAGTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909850 23 +   6154872 TGGTGTATGAAAT-AATAAGTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623200 19 + 122973662 TGGTGTATGAAA-----AAGTAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30107423 23 + 172585720 TGGTGTATGCAAT-AAAAAGTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29771145 23 - 170955103 TGGTGTATGCAAT-AAAAAGTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817882 23 -   2996164 TGGTGTATGCAAT-AAAAAGTAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     567982 23 +    766320 TGGTGTATGCAAT-AAAAAGTAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024576 23 -  71996105 TGGTGTATGCAAT-AAAAAGTAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     210139 23 +    290775 TGGTGTATGCAAT-AAAAAGTAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659960 23 -   3067355 TGGTATATGCAAT-AAAAAGTAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      37380 23 +    132061 TGGTGTACGAAAT-AAAAAGTAAC
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           135527 23 +  18854210 CACGGTATGAAAC-AAAAAGTAGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57952476 24 -  94987271 CACTAAATGaaataaaaaaataaa
i mm10.chr17               I 2 C 0
s canFam3.chr35            26249002 23 +  26524999 CAGCGTAAGAAAC-AAAAATGAGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            63421 23 +    102524 TAGTGCGTTAAAT-AAAAAGCAGA
i dasNov3.JH582591         C 0 I 2508
e micMur3.chr6               147074 5303 + 123392446 I
e proCoq1.NW_012152574v1     628382 2844 +    730504 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I

a score=10920.000000
s hg38.chr6_GL000254v2_alt   913697 1 +   4827813 T
s panTro5.chr6             29876607 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111250 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909873 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623219 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30107446 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29771168 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817905 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     568005 1 +    766320 T
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024599 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     210162 1 +    290775 T
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659983 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      37403 1 +    132061 T
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           135550 1 +  18854210 T
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57952500 1 -  94987271 t
i mm10.chr17               C 0 C 0
s canFam3.chr35            26249025 1 +  26524999 T
i canFam3.chr35            C 0 I 1817
e micMur3.chr6               147074 5303 + 123392446 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     628382 2844 +    730504 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I

a score=9555.000000
s hg38.chr6_GL000254v2_alt   913698 1 +   4827813 T
s panTro5.chr6             29876608 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111251 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909874 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623220 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30107447 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29771169 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817906 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     568006 1 +    766320 T
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024600 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     210163 1 +    290775 T
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659984 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      37404 1 +    132061 T
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           135551 1 +  18854210 T
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57952501 1 -  94987271 t
i mm10.chr17               C 0 I 5399
e micMur3.chr6               147074 5303 + 123392446 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     628382 2844 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I

a score=19165.000000
s hg38.chr6_GL000254v2_alt   913699 3 +   4827813 ATC
s panTro5.chr6             29876609 3 + 175400573 ATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111252 3 + 173848474 ATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909875 3 +   6154872 ATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623221 3 + 122973662 ATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30107448 3 + 172585720 ATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29771170 3 - 170955103 ATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817907 3 -   2996164 ATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     568007 3 +    766320 ATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024601 3 -  71996105 ATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     210164 3 +    290775 ATC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659985 3 -   3067355 ATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      37405 3 +    132061 CTC
i calJac3.chrUn_GL286223   C 0 I 376
s otoGar3.GL873550           135552 3 +  18854210 CCC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     628382 2844 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I

a score=6477.000000
s hg38.chr6_GL000254v2_alt   913702 2 +   4827813 Tg
s panTro5.chr6             29876612 2 + 175400573 Tg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111255 2 + 173848474 Tg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909878 2 +   6154872 Tg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623224 2 + 122973662 Tg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30107451 2 + 172585720 gg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29771173 2 - 170955103 gg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817910 2 -   2996164 gg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     568010 2 +    766320 gg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024604 2 -  71996105 gg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     210167 2 +    290775 gg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659988 2 -   3067355 gg
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           135555 2 +  18854210 TG
i otoGar3.GL873550         C 0 I 456
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     628382 2844 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I
e calJac3.chrUn_GL286223      37408 376 +    132061 I

a score=503584.000000
s hg38.chr6_GL000254v2_alt   913704 96 +   4827813 ccgggcgcggtggctcacgcttgtgatcccagcactttgggaggcctaggcgggcaggcagatcacgaggtcaggagttggagacaagcctggcca
s panTro5.chr6             29876614 96 + 175400573 ccgggcgcggtggctcacgcttgtgatcccagcactttgggaggcctaggcgggcaggcagatcacgaggtcaggagttggagacaagcctggcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111257 96 + 173848474 ccgggcgcggtggctcacgcttgtgatcccagcactttgggaggcctaggcgggcaggcagatcacgaggtcaggagttggagacaagcctggcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909880 96 +   6154872 ccgggcgcggtggctcacgcttgtgatcccagcactttgggaggcctaggcgggcaggcagatcacgaggtcaggagttggagacaagcctggcca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623226 92 + 122973662 ccgggcgcggtggctcacacttgtaatcccagcactttgggaggcaga----ggcaggcagatcacaaggtcaggagttggagacaagcctggcca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30107453 92 + 172585720 ccgggcgcggtggctcacgcttgtaatgccagcacattgggaggccaa----ggtggccagatcacgagttcagaagttggagacaagcctggcca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29771175 91 - 170955103 ccaggcgcggtggctcacgcttgtaatgccagcacattgggaggccaa-----gtgggcagatcacgagttcagaagttggagacaagcctggcca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2817912 91 -   2996164 ccaggcgcggtggctcacgcttgtaatgccagcacattgggaggccaa-----gtgggcagatcacgagttcagaagttggagacaagcctggcca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     568012 92 +    766320 ccgggcgcggtggctcacgcttgtaatgccagcacattgggaggccaa----ggtgggcagatcacgagttcagaagttggagacaagcctggcca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024606 92 -  71996105 ccgggcgcggtggctcacgcttgtaatgccagcacattgggaggccaa----ggtgggcagatcacgagttcagaagttggagacaagcctggcca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     210169 92 +    290775 ccgggcgcggtggctcacgcttgtaatgccagcacattgggaggccaa----ggtgggcagatcacgagttcagaagttggagacaagcctggcca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2659990 92 -   3067355 ccgggcgcggtggctcatgcttgtaatgccagcacttcgggaggccaa----ggcgggcagatcacgagttcaggagttggagacaagcctggcca
i colAng1.NW_012115566v1   C 0 M 1336
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     628382 2844 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e otoGar3.GL873550           135557 456 +  18854210 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I
e calJac3.chrUn_GL286223      37408 376 +    132061 I

a score=137703.000000
s hg38.chr6_GL000254v2_alt   913800 29 +   4827813 acacagtgaaaccctgtct-ctactaaaaa
s panTro5.chr6             29876710 29 + 175400573 acacagtgaaaccctgtct-gtactaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111353 30 + 173848474 acacagtgaaaccctgtctagtactaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5909976 29 +   6154872 acacagtgaaaccctgtct-ctactaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623318 29 + 122973662 acacagtgaaaccccatct-ctactaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30107545 29 + 172585720 acacagtgaaaccccgtct-ctactaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29771266 29 - 170955103 acacagtgaaaccccgtct-ctactaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2818003 29 -   2996164 acacagtgaaaccccgtct-ctactaaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     568104 29 +    766320 acacagtgaaaccccgtct-ctactaaaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024698 29 -  71996105 acacagtgaaaccccgtct-ctactaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     210261 29 +    290775 acacagtgaaaccccgtct-ctactaaaaa
i manLeu1.NW_012099233v1   C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     628382 2844 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e otoGar3.GL873550           135557 456 +  18854210 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I
e calJac3.chrUn_GL286223      37408 376 +    132061 I
e colAng1.NW_012115566v1    2660082 1336 -   3067355 M

a score=56958.000000
s hg38.chr6_GL000254v2_alt   913829 10 +   4827813 tacaaaaatt
s panTro5.chr6             29876739 10 + 175400573 tacaaaaatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111383 10 + 173848474 tacaaaaatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5910005 10 +   6154872 tacaaaaatt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623347 10 + 122973662 tacaaaaatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30107574 10 + 172585720 tacaaaaatt
i rheMac8.chr4             C 0 I 903
s macFas5.chr4             29771295 10 - 170955103 tacaaaaatt
i macFas5.chr4             C 0 I 905
s macNem1.NW_012011356v1    2818032 10 -   2996164 tacaaaaatt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     568133 10 +    766320 tacaaaaatt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29024727 10 -  71996105 tacaaaaatt
i chlSab2.chr17            C 0 I 901
s manLeu1.NW_012099233v1     210290 10 +    290775 tacaaaaatt
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      37784 10 +    132061 TAAAAAAATC
i calJac3.chrUn_GL286223   I 376 I 4
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     628382 2844 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e otoGar3.GL873550           135557 456 +  18854210 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I
e colAng1.NW_012115566v1    2660082 1336 -   3067355 M

a score=12606.000000
s hg38.chr6_GL000254v2_alt   913839 2 +   4827813 ag
s panTro5.chr6             29876749 2 + 175400573 ag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111393 2 + 173848474 ag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5910015 2 +   6154872 ag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623357 2 + 122973662 ag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30108487 2 + 172585720 Ag
i rheMac8.chr4             I 903 C 0
s macFas5.chr4             29772210 2 - 170955103 Ag
i macFas5.chr4             I 905 C 0
s macNem1.NW_012011356v1    2818042 2 -   2996164 ag
i macNem1.NW_012011356v1   C 0 I 1147
s cerAty1.NW_012002711v1     568143 2 +    766320 ag
i cerAty1.NW_012002711v1   C 0 I 907
s chlSab2.chr17            29025638 2 -  71996105 Ag
i chlSab2.chr17            I 901 C 0
s manLeu1.NW_012099233v1     210300 2 +    290775 ag
i manLeu1.NW_012099233v1   C 0 I 1364
s calJac3.chrUn_GL286223      37798 2 +    132061 AG
i calJac3.chrUn_GL286223   I 4 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     628382 2844 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e otoGar3.GL873550           135557 456 +  18854210 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I
e colAng1.NW_012115566v1    2660082 1336 -   3067355 M

a score=10504.000000
s hg38.chr6_GL000254v2_alt   913841 4 +   4827813 gccg
s panTro5.chr6             29876751 4 + 175400573 gccg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111395 4 + 173848474 gccg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5910017 4 +   6154872 gccg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623359 4 + 122973662 gctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30108489 4 + 172585720 gccg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29772212 4 - 170955103 gccg
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29025640 4 -  71996105 gccg
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      37800 4 +    132061 Ccca
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     628382 2844 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e otoGar3.GL873550           135557 456 +  18854210 I
e aotNan1.NW_018509740v1     330394 918 -    457564 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I
e colAng1.NW_012115566v1    2660082 1336 -   3067355 M
e manLeu1.NW_012099233v1     210302 1364 +    290775 I
e cerAty1.NW_012002711v1     568145 907 +    766320 I
e macNem1.NW_012011356v1    2818044 1147 -   2996164 I

a score=15649.000000
s hg38.chr6_GL000254v2_alt   913845 6 +   4827813 ggcgcg
s panTro5.chr6             29876755 6 + 175400573 ggcgcg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111399 6 + 173848474 ggcgcg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5910021 6 +   6154872 ggcgcg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623363 6 + 122973662 ggcgcg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30108493 6 + 172585720 gtcgcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29772216 6 - 170955103 gtcgcc
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29025644 6 -  71996105 gtcgcc
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      37804 6 +    132061 ggcgtg
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     331312 6 -    457564 ggcgtg
i aotNan1.NW_018509740v1   I 918 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     628382 2844 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e otoGar3.GL873550           135557 456 +  18854210 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I
e colAng1.NW_012115566v1    2660082 1336 -   3067355 M
e manLeu1.NW_012099233v1     210302 1364 +    290775 I
e cerAty1.NW_012002711v1     568145 907 +    766320 I
e macNem1.NW_012011356v1    2818044 1147 -   2996164 I

a score=406700.000000
s hg38.chr6_GL000254v2_alt   913851 102 +   4827813 gtggctc-acgcctgtaatccccgcactttgggaggccgaggcgagcggatcac--gaggtcaggagatcgagatcatcctggctaacacgacgaaaccccgt-ct--
s panTro5.chr6             29876761 102 + 175400573 gtggctc-acgcctgtaatccccgcactttgggaggccgaggcgggcggatcac--gaggtcaggagatcgagatcatcctggctaacacgacgaaaccccgt-ct--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111405 103 + 173848474 gtggctc-acgcctgtaatccccgcactttgggaggccgaggcgggcggatcac--gaggtcaggagatcgagatcatcctggctagcacgacgaaaccccgtact--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5910027  99 +   6154872 --ggctc-acgcctgtaat-cccgcactttgggaggccgaggcgggcggatcac--gaggtcaggagatcgagatcatcctggctaacacgacgaaaccccgt-ct--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623369 103 + 122973662 gtggctcaacgcctgtaatcccagcactttgggaggccgaggtgggcggatcac--gaggtcaggagatcgagaccatcctggctaacacgatgaaaccccat-ct--
i nomLeu3.chr1a            C 0 I 313
s rheMac8.chr4             30108499 102 + 172585720 gtggctc-gcgcctgtaatccgagcactttgggaggctgaggcgggcagatcac--gaggccaggagttcgagaacagcctgaccaacatggagaaacgccgt-ct--
i rheMac8.chr4             C 0 I 2
s macFas5.chr4             29772222 102 - 170955103 gtggctc-gcgcctgtaatccgagcactttgggaggctgaggcgggcagatcac--gaggccaggagttcgagaacagcctgaccaacatggagaaacgccgt-ct--
i macFas5.chr4             C 0 I 2
s cerAty1.NW_012002711v1     569052 102 +    766320 gtggctc-gcgcctgtaatccgagcactttgggaggctgaggcgggcagatcac--gaggccaggagttcgagaacagcctgaccaacatggagaaacgccgt-ct--
i cerAty1.NW_012002711v1   I 907 I 2
s chlSab2.chr17            29025650 102 -  71996105 gtggctc-gcgcctgtaatccgagcactttgggaggctgaggcgggcagatcac--gaggccaggagttcgagaacagcctgaccaacatggagaaacgccgt-ct--
i chlSab2.chr17            C 0 I 2
s calJac3.chrUn_GL286223      37810 106 +    132061 gtggctc-atgcctgtagtcccagcactttgagaggccaaggtgggcagatcacttgaggtcaggaattcgagaccagcctagccaacgtgatgaaccctcgt-ctct
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     331318 106 -    457564 gtggctc-acgcctgtagtctcagcactttgagaggccaaggtgggcagatcacttgaggtcaggaattcgagaccagcctagccaacatgatgaaacctcgt-ctct
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     628382 2844 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e otoGar3.GL873550           135557 456 +  18854210 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I
e colAng1.NW_012115566v1    2660082 1336 -   3067355 M
e manLeu1.NW_012099233v1     210302 1364 +    290775 I
e macNem1.NW_012011356v1    2818044 1147 -   2996164 I

a score=17542.000000
s hg38.chr6_GL000254v2_alt   913953 15 +   4827813 actt----aaaaaaaaata
s panTro5.chr6             29876863 17 + 175400573 actta--aaaaaaaaaata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111508 16 + 173848474 actt---aaaaaaaaaata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5910126 17 +   6154872 actta--aaaaaaaaaata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623785 15 + 122973662 ----aaaaaaaaaaaaata
i nomLeu3.chr1a            I 313 C 0
s rheMac8.chr4             30108603 10 + 172585720 ---------actaaaaata
i rheMac8.chr4             I 2 C 0
s macFas5.chr4             29772326 10 - 170955103 ---------actaaaaata
i macFas5.chr4             I 2 C 0
s cerAty1.NW_012002711v1     569156 10 +    766320 ---------actaaaaata
i cerAty1.NW_012002711v1   I 2 C 0
s chlSab2.chr17            29025754 10 -  71996105 ---------actaaaaaca
i chlSab2.chr17            I 2 C 0
s calJac3.chrUn_GL286223      37916 10 +    132061 ---------actaaaaata
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     331424 10 -    457564 ---------actaaaaata
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     628382 2844 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e otoGar3.GL873550           135557 456 +  18854210 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I
e colAng1.NW_012115566v1    2660082 1336 -   3067355 M
e manLeu1.NW_012099233v1     210302 1364 +    290775 I
e macNem1.NW_012011356v1    2818044 1147 -   2996164 I

a score=617574.000000
s hg38.chr6_GL000254v2_alt   913968 131 +   4827813 c-aaaaattagccgagggtggtggcgggcgcctgaaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgagctgagatcacgccactgcactc---taagagt--------
s panTro5.chr6             29876880 131 + 175400573 c-aaaaattagccaggtgtggtggtgcatgcctgaaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgagctgagatcacaccactgcactc---taagagt--------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111524 131 + 173848474 c-aaaaattagccaggtgtggtggtgcatgcctgaaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgagctgagatcacaccactgcactc---taagagt--------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5910143 133 +   6154872 caaaaaattagccgggggtggtggcgggcgcctgaaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgagctgagatcacgccactgcactct--taagagt--------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623800 108 + 122973662 c-aaaaattagccggccgtggtggcgggtgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtaagct--------------------------gagT--------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30108613 131 + 172585720 c-aaaaattagccaggtgtggtggtgggcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctggaaggtagaggttgcagtgagccaagatcaggccactgcactc---caagagt--------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29772336 131 - 170955103 c-aaaaattagccaggtgtggtggtgggcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctggaaggtagaggttgcagtgagccaagatcaggccactgcactc---caagagt--------
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     569166 131 +    766320 c-aaaaattagccaggtgtggtggtgggcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctggaaggtggaggttgcagtgagccgagatcaggccactacactc---caagagt--------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29025764 131 -  71996105 c-aaaaattagcagggtgtggtggtgggcgcctgtaatcccagctactcaggaggctgaggcaggagaatctcttgaacctggaaggtagaggttgcagtgagccaagatcaggccactgcactc---caagagt--------
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      37926 131 +    132061 c-aaaaattagccaggcatgatggcagggatctgtaatcccagctactcaggagactgaagcaggagaattgcttgaacctgggagacagaggttgcagtgagccaaaatcacgccactgcactc---caagagt--------
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     331434 131 -    457564 c-aaaaattagccaggcatgatggcagggatctgtaatcccagctactcaggagactgaagcaggagaattgcttgaacctgggaggcagaggctgcagtgagctgaaatcacaccactgcactc---caagagt--------
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           136013 139 +  18854210 c-aaaaattagccagatgttatagcaggtgcctgtagtcccagctacttgggaggctgaggcaagagaatcgcttaagcccaagagtttgaggttgctgtgagctgtaat---gccagggcaccctaccaagggcaacatagt
i otoGar3.GL873550         I 456 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     628382 2844 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I
e colAng1.NW_012115566v1    2660082 1336 -   3067355 M
e manLeu1.NW_012099233v1     210302 1364 +    290775 I
e macNem1.NW_012011356v1    2818044 1147 -   2996164 I

a score=80698.000000
s hg38.chr6_GL000254v2_alt   914099 13 +   4827813 gaaaccatgtctc
s panTro5.chr6             29877011 13 + 175400573 gaaaccatgtctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111655 13 + 173848474 gaaaccatgtctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5910276 13 +   6154872 gaaaccatgtctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623908 13 + 122973662 GAAACCATGTCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30108744 13 + 172585720 gaaaccatgtctc
i rheMac8.chr4             C 0 I 3
s macFas5.chr4             29772467 13 - 170955103 gaaaccatgtctc
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1    2819191 13 -   2996164 gaaaccatgtctc
i macNem1.NW_012011356v1   I 1147 I 3
s cerAty1.NW_012002711v1     569297 13 +    766320 gaaaccatgtctc
i cerAty1.NW_012002711v1   C 0 I 3
s chlSab2.chr17            29025895 13 -  71996105 gaaaccatgtctc
i chlSab2.chr17            C 0 I 3
s calJac3.chrUn_GL286223      38057 13 +    132061 gaaaccatgcatc
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     331565 13 -    457564 gaaaccatgcatt
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           136152 13 +  18854210 gagactctgtttc
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     628382 2844 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e cebCap1.NW_016107755v1     245554 1652 -   1771730 I
e colAng1.NW_012115566v1    2660082 1336 -   3067355 M
e manLeu1.NW_012099233v1     210302 1364 +    290775 I

a score=56857.000000
s hg38.chr6_GL000254v2_alt   914112 11 +   4827813 aaaaaaaaaa----a
s panTro5.chr6             29877024 11 + 175400573 gaaaaaaaaa----a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111668 10 + 173848474 g-aaaaaaaa----a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5910289 10 +   6154872 a-aaaaaaaa----a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623921 11 + 122973662 aaaaaaaaaa----a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30108760 11 + 172585720 aaaaaaaaaa----a
i rheMac8.chr4             I 3 C 0
s macFas5.chr4             29772483 11 - 170955103 aaaaaaaaaa----a
i macFas5.chr4             I 3 C 0
s macNem1.NW_012011356v1    2819207 10 -   2996164 aaaaaaaaaa-----
i macNem1.NW_012011356v1   I 3 C 0
s cerAty1.NW_012002711v1     569313 10 +    766320 aaaaaaaaaa-----
i cerAty1.NW_012002711v1   I 3 C 0
s chlSab2.chr17            29025911 15 -  71996105 aaaaaaaaaaaaaaa
i chlSab2.chr17            I 3 C 0
s colAng1.NW_012115566v1    2661420 11 -   3067355 aaaaaaaaaa----a
i colAng1.NW_012115566v1   M 1336 C 0
s calJac3.chrUn_GL286223      38070 10 +    132061 -aaaaaaaaa----a
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     247206 11 -   1771730 aaaaaaaaaa----a
i cebCap1.NW_016107755v1   I 1652 C 0
s aotNan1.NW_018509740v1     331578  6 -    457564 -----aaaaa----a
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           136165 11 +  18854210 aaaaaaaaga----a
i otoGar3.GL873550         C 0 I 1243
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     628382 2844 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e manLeu1.NW_012099233v1     210302 1364 +    290775 I

a score=120201.000000
s hg38.chr6_GL000254v2_alt   914123 18 +   4827813 aaagtcaaaaaTACTAAT
s panTro5.chr6             29877035 18 + 175400573 aaagtcaaaaaTACTAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111678 18 + 173848474 aaagtcaaaaatactaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5910299 18 +   6154872 aaagtcaaaaatactaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623932 18 + 122973662 aaagtgaaaaatactaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30108771 18 + 172585720 aaagtaaaaaaTACTAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29772494 18 - 170955103 aaagtaaaaaaTACTAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2819217 13 -   2996164 -----agtaaaTACTAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     569323 17 +    766320 -aaGTCAAAAATACTAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29025926 18 -  71996105 aaagtcaaaaaTACTAAT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2661431 18 -   3067355 aaagtcaaaaaTACTAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      38080 18 +    132061 GAGGTCAAAAGTACTAAT
i calJac3.chrUn_GL286223   C 0 I 1
s cebCap1.NW_016107755v1     247217 18 -   1771730 aaggtcaaaagtactaat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     331584 18 -    457564 aaGGTCAAAAGTACTAAT
i aotNan1.NW_018509740v1   C 0 I 1
s otoGar3.GL873550           137419 13 +  18854210 AAGATCAAAAATC-----
i otoGar3.GL873550         I 1243 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     628382 2844 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e manLeu1.NW_012099233v1     210302 1364 +    290775 I

a score=528091.000000
s hg38.chr6_GL000254v2_alt   914141 63 +   4827813 AAAAATACTAATCTCGTAGTTAACAGATTGCTGTGACCTAGAGCAAGTAAAGGTGTAATTATC
s panTro5.chr6             29877053 63 + 175400573 AAAAATACTAATCTCGTAGTTAACAGATTGCTGTGACCTAGAGCAAGTAAAGGTGTAATTATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111696 63 + 173848474 aaaaaTACTAATCTCGTAGTTAACAGATTGCTGTGACCTAGAGCAAGTAAAGGTGTAATTATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5910317 63 +   6154872 aaaaaTACTAATCTCGTAGTTAACAGATTGCTGTGACCTAGAGCAAGTAAAGGTGTAATTATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74623950 63 + 122973662 aaaaataCTAACCTCGTAGTTAACAGATTGCTGTGACCTAGAGCAAGTAAAAGTGTAATTATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30108789 63 + 172585720 CAAAATCCTAATCTCTTAGTTAACAGGTTGCTGTGACCTAGAGCAAGTAAAAATGTAATTATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29772512 63 - 170955103 CAAAATCCTAATCTCTTAGTTAACAGGTTGCTGTGACCTAGAGCAAGTAAAAATGTAATTATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2819230 58 -   2996164 C-AAATCCTAA--TTTTAGTTAACAGGTTGCTGTGA-CTAGGGCAAGT-AAAATGTAATTATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     569340 63 +    766320 CAAAATCCTAATCTCTTAGTTAACAGGTTGCTGTGACCTAGAGCAAGTAAAAATGTAATTATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29025944 63 -  71996105 CAAAATCCTAATCTCTTAGTTAACAGGTTGTTGTGACCTAGAGCAAGTAAAAATGTAATTATC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2661449 63 -   3067355 CAAAATCCTAATCTCTTAGTTAACAGGTTGCTGTGACCTAGAGCAAGTAAAAGTGTAATTATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      38099 63 +    132061 AAAAATACTAATATCTTAGTTAACAGATTGCTGTGACCTAGAGCAAGTAAAAGTGTAATTATC
i calJac3.chrUn_GL286223   I 1 C 0
s cebCap1.NW_016107755v1     247235 63 -   1771730 aaaaatactaataTCTTAGTTAACAGATTGCTGTGACCTAGAGCAAGTAAAGGTGTAGTTATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     331603 62 -    457564 AAAAATACTAATCTCTTAGTTAACAGATTGCTGTGACCTAGAGCAAG-AAAAATGTAATTAAT
i aotNan1.NW_018509740v1   I 1 C 0
s proCoq1.NW_012152574v1     631226 63 +    730504 AAAAATACTAATCTCTTAGCTAACAGATCGGTGTGATCTAGATCCAGTGAAAGTGTAAATATC
i proCoq1.NW_012152574v1   I 2844 I 464
s otoGar3.GL873550           137432 58 +  18854210 AAAAATACTAATCTCCTAGATAACAGATTGTTGTGATCTAGATCTAG-ATTGGTGTGAT----
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e canFam3.chr35            26249026 1817 +  26524999 I
e manLeu1.NW_012099233v1     210302 1364 +    290775 I

a score=885061.000000
s hg38.chr6_GL000254v2_alt   914204 116 +   4827813 AGCCTACAGGGGTTAGAGTGGCAAGAAGATGCCTGAGGGTGAGCCTACAGCCTAAAAGAT----------AATAGAATACAAAGGCTGAAGACCTACAGGCAGGGATTCT--TTGTCattcattcttt
s panTro5.chr6             29877116 116 + 175400573 AGCCTATAGGGGTTAGAGTGGCAAGAAGATGCCTGAGGGCGAGCCTACAGCCTAAAAGAT----------AATAGAATACAAAGGCTGAAGACCTACAGGCAGGGATTCT--TTGTCattcattcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111759 116 + 173848474 AGCCTATAGGGGTTAGAGTGGCAAGAAGATGCCTGAGGGCGAGCCTACAGCCTAAAAGAT----------AATGGAATACAAAGGCTGAAGACCTACAGGCAGGGATTCT--TTGTCattcattcttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5910380 116 +   6154872 AGCCTATAGGGGTTAGAGTGGCAAGAAGATGCCTGAGGGCGAGCCTACAGCCTAAAAGAT----------AATAGAATACAAAGGCTGAAGACCTACAGGCAGGGATTCT--TTGTCattcattcttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74624013 116 + 122973662 AGCCTAGAGGGGTTAGAGTGGCAAGAAGATGCCTGAAGGTGAGCCCACAGCCTAAAAGAT----------AATAGAATACAAAGGCTAAAGACCTACAGGCGGGGATTCT--TTGTCattcattcttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30108852 116 + 172585720 AGCCTAGAGGGGTTAGAGTGGCAAGAAGATGCCTGAGGGAGAGCCCACAGCCTAAAAGAG----------AATAGACTACAAAGGCTGAAGACCTACAGGCGGGGATTCT--TTGTCattcattcttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29772575 116 - 170955103 AGCCTAGAGGGGTTAGAGTGGCAAGAAGATGCCTGAGGGAGAGCCCACAGCCTAAAAGAG----------AATAGACTACAAAGGCTGAAGACCTACAGGCGGGGATTCT--TTGTCattcattcttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2819288 116 -   2996164 AGCCTAGAGGGGTTAGAGTGGCAAGAAGATGCCTGAGGGAGAGCCCACAGCCTAAAAGAG----------AATAGACTACAAAGGCTGAAGACATACAGGCGGGGATTCT--TTGTCattcattcttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     569403 116 +    766320 AGCCTAGAGGGGTTAGAGTGGCAAGAAGATGCCGGAGGGAGAGCCCACAGCCTAAAAGAG----------AATAGACTACAAAGGCTGAAGACCTACAGGCGGGGATTCT--TTGTCattcattcttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29026007 116 -  71996105 AGCCTAGAGGGGTTAGAGTGGCAAGAAGATGCCTGAGGGAGAGCCCACAGCCTAAAAGAG----------AATAGACTACAAAGGCTGAAGACCTACAGGCGGGGATTCT--TTGTCattcattcttt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2661512 116 -   3067355 AGCCTAGAGGGGTTAGAGTGGCAAGAAGATGCCTGAGGGAGCGCCCACAGCCTAAAAGAG----------AATAGACTACAAAGGCTGAAGACCTACAAGTGGGGATTCT--TTGTCattcattcttt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      38162 106 +    132061 AGACTAGAGGGAGTAGAATAGC---AAGATGACAGAGGGCAAGCCCAAAGCCTAAAAGAG----------AATAGAATGCAAAGG-------CCTACAGGCAGAAATGCT--TTGTCattcactcttt
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     247298 113 -   1771730 AGCCTAGAGGGATTAGAATAGC---AAGATGCCTGAGGGCAAGCCCAAAGCCTAAAAGAG----------AATAGAATTCAAAGGCCGAAGACCTACAGGCAGAGATTCT--TTGTCattcactcttt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     331665 125 -    457564 GGCCTAGA-GGATTAGAATAGCATGAAGATGCCTGAGGGCGAGCCCAAAGCCTAAAAGAGAATAGAATTCAATAGAATTCAAAGGCCGAAGACCTACAGCCAGAGATTCT--TTGTCattcactcttt
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           137490 113 +  18854210 ---CTAGAGGAGTTAGAATA-CAAGAAG-TGCCTGAGGGTGTAAGCACAACCTGAAAGGT----------AGTAGAATGCAAAGGCTAGAGCTCTCAAGGTTGGGGTTCTAATTGTCACTCCGtcttt
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     631289 464 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e manLeu1.NW_012099233v1     210302 1364 +    290775 I

a score=1748690.000000
s hg38.chr6_GL000254v2_alt   914320 180 +   4827813 cagcaaacttattctaatatgtat-ccctcactattcaatgcccaggagggcacagggaaaataagacgaagtcctgccctc----actggctaacattctaAGCACAGGTGCTGCACAAGAGGTGTTATGTTTTTTG-GGGGAgccagacacaggcctaagcactttatgtaccttgtctcattt
s panTro5.chr6             29877232 180 + 175400573 cagcaaacttattctattatgtat-ccctcactattcaatgcccaggagggcacagggaaaatacgaggaagtcctgccctc----actggctaacattctaAGCACAGGTGCTGCACAAGAGGTGTTATGTTTTTTG-GGGGAgccagacacaggcctaagcactttatgtaccttgtctcattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30111875 180 + 173848474 cagcaaacttattctattatgtat-ccctcactattcaatgcccaggagggcacagggaaaatacgaggaagtcctgccctc----actggctaacattctaAGCACAGGTGCTGCACAAGAGTTGTTATGTTTTTTG-GGGGAgccagacacaggcctaagcactttatgtaccttgtctcattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5910496 181 +   6154872 cagcaaacttattctattatgtatcccctcactattcaatgcccaggagggcacagggaaaataagacgaagtcctgccctc----actggctaacattctaAGCACAGGTGCTGCACAAGAGGTGTTATGCTTTTTG-GGGGAgccagacacaggcctaagcactttatgtaccttgtctcattt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74624129 180 + 122973662 cagcaaatttattctattatgtat-cactcactattcaatgcccaggagggcacagggaaaataagacgaagtcctgccctc----actggctaacattctaAGCACAGGTGCTGCACAAGAGGTGTTATGTTTTTTG-GGGGAgccagacacaggcctaagcactttatgtaccttgtctcattt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30108968 180 + 172585720 cagcaaacttattctattacgtat-ccctcactattcaatgcccaggagggcacagggaaaataagacaaagtcctgccctc----actggctaacattctGCCCACAAGTGCTGCACAAGAGGTGTTATGTTTTTTG-GGGGAAccagacacaggcctaagcactttatgtaccttgtctcattt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29772691 180 - 170955103 cagcaaacttattctattacgtat-ccctcactattcaatgcccaggagggcacagggaaaataagacaaagtcctgccctc----actggctaacattctGCCCACAAGTGCTGCACAAGAGGTGTTATGTTTTTTG-GGGGAAccagacacaggcctaagcactttatgtaccttgtctcattt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2819404 179 -   2996164 cagcaaacttattctattac-tat-ccctcactattcaatgcccaggagggcacagggaaaataagacaaagtcctgccctc----actggctaacattctGCCCACAAGTGCTGCACAAGAGGTGTTATGTTTTTTG-GGGGAAccagacacaggcctaagcactttatgtaccttgtctcattt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     569519 180 +    766320 cagcaaacttattctattatgtat-ccctcactattcaatgcccaggagggcacagggaaaataagacaaagtcctgccctc----actggctaacattctGCGCACAAGTGCTGCACAAGAGGTGTTATGTTTTTGG-GGGGAgccagacacaggcctaagcactttatgtaccttgtctcattt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29026123 180 -  71996105 cagcaaacttattctattatgtat-ccctcactattcaatgcccaggagggcacagggaaaataagacaaagtcctgccctc----actggctaacattctGCGCACAAGTGCTGCACAAGAGGTGTTATGTTTTTTG-GGGGAgccagacacaggcctaagcactttatgtaccttgtctcattt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     211666 180 +    290775 cagcaaacttattctattatgtat-ccctcactattcaatgcccaggagggcacagggaaaataagacaaagtcctgccctc----actggctaacattctGCGCACAAGTGCTGCACAAGAGGTGTTATGTTTTTTG-GGGGAgccagacacaggcctaagcactttatgtaccttgtctcattt
i manLeu1.NW_012099233v1   I 1364 C 0
s colAng1.NW_012115566v1    2661628 180 -   3067355 cagcaaacttattctattatgtat-ccctcactattcaatgcccaggagggcacagggaaaataagacaaagtcctgccctc----actggctaacattctGCGCACAGGTGCTGCACAAGAGGTGTTACGTTTTTGG-GGGGAgccagacacaggcctaagcactttatgtaccttgtctcattt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      38268 181 +    132061 cagcaaacttattctattatgtat-ccctcactattcaatgcccagtagggtacagggaaaataagaccaggtcctgccctc----aTTAGGTAGCATTCGATGCACAGGTGCTGTACAAGAGGTGTTTTGTTTTGGGTGGGGAgccagacacaggcctaagcactttgtgtaccttgtcccattt
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     247411 179 -   1771730 cagcaaacttattctattatgtat-ccctcactattcaatgcccaggagggtacaggataaataagaccaggtcgtgccctc----gttagctagcattctaTGCACGGGTGCTGTACAAGAGGCGTTATGTTTTGG--GGGGAGGcagacacaggcctaagcactttgtgtaccttgtcttattt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     331790 180 -    457564 cagcaaacttattctattatgtat-ccctcactattcaatgcccagcagggtacagggaaaataagaccaggtcctgccctc----attagctagtattctaTGCACAGGTGCTGTACAAGAGGTGTTATGTTTTTGG-GGGGAgccagccacaggcctaagcactttgtgtaccttgtctcattt
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           137603 179 +  18854210 caacatacttattctattaagtat-ccctcactgttctatgcccaggagggtactgggaaaacaagacaaagtctcaccttcatggactaactaacattcaatggCCAAGTTCTGCACGAGAAGTATTATGTTTTGGG-AAAGAGATagacacgggcctaagcactttatgcacctcatct-----
i otoGar3.GL873550         C 0 I 56
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     631289 464 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I

a score=416146.000000
s hg38.chr6_GL000254v2_alt   914500 47 +   4827813 aatcctcacatcagcaccacgag----gtgacagaattatcattttgcagt
s panTro5.chr6             29877412 47 + 175400573 aatcctcacatcagcaccacgag----gtgatagaattatcattttacagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30112055 47 + 173848474 aatcctcacatcagcaccacgag----gtgacagaattatcattttacagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5910677 47 +   6154872 aatcctcacatcagcaccacgag----gtgacagaattatcattttacagt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74624309 51 + 122973662 aatcctcacatcagcaccacgaggtgagtgacagaattatcattttacagt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30109148 51 + 172585720 aatccttacatcagcgccatgaggtgagtgacagaattatcattttacagt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29772871 51 - 170955103 aatccttacatcagcgccatgaggtgagtgacagaattatcattttacagt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2819583 51 -   2996164 aatccttacatcagcgccatgaggtgagtgacagaattatcattttacagt
i macNem1.NW_012011356v1   C 0 I 4
s cerAty1.NW_012002711v1     569699 51 +    766320 aatccttacatcagcaccatgaggtgagtgacagaattatcattttacagt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29026303 51 -  71996105 aatccttacatcagcaccatgaggtgagtgacagaattatcattttacagt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     211846 51 +    290775 aatccttacatcagcaccatgaggtgagtgacagaattatcattttacagt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2661808 51 -   3067355 aatccttacatcagcaccatgaggtgagtgacagaattatcattttacagt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      38449 51 +    132061 aatccccacataagcaccaggaggtgagcgacagaattaccactttacagt
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     247590 51 -   1771730 aatcctcacatcagcaccagcaggtgagcgacagaattaccactttacagt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     331970 51 -    457564 aatcctcacatcagcaccaggaggtgagcgacagaattaccactttacagt
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     631289 464 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e otoGar3.GL873550           137782 56 +  18854210 I

a score=37406.000000
s hg38.chr6_GL000254v2_alt   914547 5 +   4827813 taaat
s panTro5.chr6             29877459 5 + 175400573 taaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30112102 5 + 173848474 taaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5910724 5 +   6154872 taaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74624360 5 + 122973662 taaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30109199 5 + 172585720 taaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29772922 5 - 170955103 taaat
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     569750 5 +    766320 taaat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29026354 5 -  71996105 taaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     211897 5 +    290775 taaat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2661859 5 -   3067355 taaat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      38500 5 +    132061 taagt
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     247641 5 -   1771730 taagt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     332021 5 -    457564 taagt
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     631289 464 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e otoGar3.GL873550           137782 56 +  18854210 I
e macNem1.NW_012011356v1    2819634 4 -   2996164 I

a score=12740.000000
s hg38.chr6_GL000254v2_alt   914552 5 +   4827813 aaatt
s panTro5.chr6             29877464 5 + 175400573 aaatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30112107 5 + 173848474 aaatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5910729 5 +   6154872 aaatt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74624365 5 + 122973662 aaatt
i nomLeu3.chr1a            C 0 C 0
s calJac3.chrUn_GL286223      38505 5 +    132061 aaatt
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     247646 5 -   1771730 aaatt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     332026 5 -    457564 aaatt
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     631289 464 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e otoGar3.GL873550           137782 56 +  18854210 I
e colAng1.NW_012115566v1    2661864 0 -   3067355 C
e manLeu1.NW_012099233v1     211902 0 +    290775 C
e chlSab2.chr17            29026359 0 -  71996105 C
e cerAty1.NW_012002711v1     569755 0 +    766320 C
e macNem1.NW_012011356v1    2819634 4 -   2996164 I
e macFas5.chr4             29772927 0 - 170955103 C
e rheMac8.chr4             30109204 0 + 172585720 C

a score=56052.000000
s hg38.chr6_GL000254v2_alt   914557 71 +   4827813 gatatttcttcatggccaggtgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcgggtg
s panTro5.chr6             29877469 71 + 175400573 gacatttcttcatggccgggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcgggtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30112112 71 + 173848474 gacatttcttcatggccgggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcgggtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5910734 71 +   6154872 gatatttcttcatggccgggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcgggtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74624370 71 + 122973662 gagatttaTTCATGGCCAGGCGCAGTGGTTTGCACCTGCAATCCCTACACTATGGGATGACCAGGCGAATG
i nomLeu3.chr1a            C 0 I 825
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     631289 464 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e otoGar3.GL873550           137782 56 +  18854210 I
e aotNan1.NW_018509740v1     332031  0 -    457564 C
e cebCap1.NW_016107755v1     247651  0 -   1771730 C
e calJac3.chrUn_GL286223      38510  0 +    132061 C
e colAng1.NW_012115566v1    2661864  0 -   3067355 C
e manLeu1.NW_012099233v1     211902  0 +    290775 C
e chlSab2.chr17            29026359  0 -  71996105 C
e cerAty1.NW_012002711v1     569755  0 +    766320 C
e macNem1.NW_012011356v1    2819634  4 -   2996164 I
e macFas5.chr4             29772927  0 - 170955103 C
e rheMac8.chr4             30109204  0 + 172585720 C

a score=107983.000000
s hg38.chr6_GL000254v2_alt   914628 190 +   4827813 gatcacctgaagtcggagttcgagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaaattagccgggcatagtggcgcatagcctgtaatcccagctactcggaaggctgaggcaggagaatcacttgaatccaggaggtggaggttgcggtgagccgagatcgcgccactgcac
s panTro5.chr6             29877540 190 + 175400573 gatcacctgaagtcggagttcgagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaaattagccgggcatggtggcgcatagcctgtaatcccagctactcagaaggctgaggcaggagaatcacttgaatccaggaggtggaggttgcggtgagccgagatcgcgccactgcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30112183 190 + 173848474 gatcacctgaagtcggagttcgagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaaattagccgggcatggtggcgcatagcctgtaatcccagctactcagaaggctgaggcaggagaatcacttgaatccaggaggtggaggttgcggtgagccgagatcgcgccactgcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5910805 190 +   6154872 gatcacctgaagtcggagttcgagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaaattagccgggcatggtggcgcatagcctgtaatcccagctactcggaaggctgaggcaggagaatcacttgaatccaggaggtggaggttgcggtgagccaagatcgcgccactgcac
i gorGor5.CYUI01015250v1   C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e dasNov3.JH582591            63444 2508 +    102524 I
e proCoq1.NW_012152574v1     631289 464 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e otoGar3.GL873550           137782  56 +  18854210 I
e aotNan1.NW_018509740v1     332031   0 -    457564 C
e cebCap1.NW_016107755v1     247651   0 -   1771730 C
e calJac3.chrUn_GL286223      38510   0 +    132061 C
e colAng1.NW_012115566v1    2661864   0 -   3067355 C
e manLeu1.NW_012099233v1     211902   0 +    290775 C
e chlSab2.chr17            29026359   0 -  71996105 C
e cerAty1.NW_012002711v1     569755   0 +    766320 C
e macNem1.NW_012011356v1    2819634   4 -   2996164 I
e macFas5.chr4             29772927   0 - 170955103 C
e rheMac8.chr4             30109204   0 + 172585720 C
e nomLeu3.chr1a            74624441 825 + 122973662 I

a score=21953.000000
s hg38.chr6_GL000254v2_alt   914818 47 +   4827813 tccagcctgggcaacaagagca-aaactccgtctcaaaaaaaaaaaaa
s panTro5.chr6             29877730 44 + 175400573 tccagcctgggcaacaagagca-aaactccgtctc---aaaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30112373 46 + 173848474 tccagcctgggcaacaagagca-aaactccgtcta-aaaaaaaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5910995 41 +   6154872 tccagcctgggcaacaagagca-aaattccgtctc------aaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s dasNov3.JH582591            65952 46 +    102524 tcgagcccgggtg--gggggcacgagccccgttttgcagattaagaaa
i dasNov3.JH582591         I 2508 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e proCoq1.NW_012152574v1     631289 464 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e otoGar3.GL873550           137782 56 +  18854210 I
e aotNan1.NW_018509740v1     332031  0 -    457564 C
e cebCap1.NW_016107755v1     247651  0 -   1771730 C
e calJac3.chrUn_GL286223      38510  0 +    132061 C
e colAng1.NW_012115566v1    2661864  0 -   3067355 C
e manLeu1.NW_012099233v1     211902  0 +    290775 C
e chlSab2.chr17            29026359  0 -  71996105 C
e cerAty1.NW_012002711v1     569755  0 +    766320 C
e macNem1.NW_012011356v1    2819634  4 -   2996164 I
e macFas5.chr4             29772927  0 - 170955103 C
e rheMac8.chr4             30109204  0 + 172585720 C
e nomLeu3.chr1a            74624441 825 + 122973662 I

a score=-1390.000000
s hg38.chr6_GL000254v2_alt   914865 1 +   4827813 -a
s panTro5.chr6             29877774 1 + 175400573 -a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30112419 1 + 173848474 -a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5911036 1 +   6154872 -a
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873550           137838 1 +  18854210 -a
i otoGar3.GL873550         I 56 C 0
s dasNov3.JH582591            65998 1 +    102524 c-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e proCoq1.NW_012152574v1     631289 464 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e aotNan1.NW_018509740v1     332031 0 -    457564 C
e cebCap1.NW_016107755v1     247651 0 -   1771730 C
e calJac3.chrUn_GL286223      38510 0 +    132061 C
e colAng1.NW_012115566v1    2661864 0 -   3067355 C
e manLeu1.NW_012099233v1     211902 0 +    290775 C
e chlSab2.chr17            29026359 0 -  71996105 C
e cerAty1.NW_012002711v1     569755 0 +    766320 C
e macNem1.NW_012011356v1    2819634 4 -   2996164 I
e macFas5.chr4             29772927 0 - 170955103 C
e rheMac8.chr4             30109204 0 + 172585720 C
e nomLeu3.chr1a            74624441 825 + 122973662 I

a score=3879.000000
s hg38.chr6_GL000254v2_alt   914866 7 +   4827813 aaaaaag--
s panTro5.chr6             29877775 7 + 175400573 aaaaaag--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30112420 7 + 173848474 aaagaag--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5911037 7 +   6154872 aaaaaaa--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74625266 7 + 122973662 AAAAAAA--
i nomLeu3.chr1a            I 825 C 0
s otoGar3.GL873550           137839 6 +  18854210 -aagaaa--
i otoGar3.GL873550         C 0 I 1
s dasNov3.JH582591            65999 7 +    102524 --ggaggtt
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e proCoq1.NW_012152574v1     631289 464 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e aotNan1.NW_018509740v1     332031 0 -    457564 C
e cebCap1.NW_016107755v1     247651 0 -   1771730 C
e calJac3.chrUn_GL286223      38510 0 +    132061 C
e colAng1.NW_012115566v1    2661864 0 -   3067355 C
e manLeu1.NW_012099233v1     211902 0 +    290775 C
e chlSab2.chr17            29026359 0 -  71996105 C
e cerAty1.NW_012002711v1     569755 0 +    766320 C
e macNem1.NW_012011356v1    2819634 4 -   2996164 I
e macFas5.chr4             29772927 0 - 170955103 C
e rheMac8.chr4             30109204 0 + 172585720 C

a score=6695.000000
s hg38.chr6_GL000254v2_alt   914873 1 +   4827813 a
s panTro5.chr6             29877782 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30112427 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5911044 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74625273 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30109204 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29772927 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2819638 1 -   2996164 a
i macNem1.NW_012011356v1   I 4 C 0
s cerAty1.NW_012002711v1     569755 1 +    766320 a
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29026359 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     211902 1 +    290775 a
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2661864 1 -   3067355 a
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           137846 1 +  18854210 a
i otoGar3.GL873550         I 1 C 0
s dasNov3.JH582591            66006 1 +    102524 a
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e proCoq1.NW_012152574v1     631289 464 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I
e aotNan1.NW_018509740v1     332031 0 -    457564 C
e cebCap1.NW_016107755v1     247651 0 -   1771730 C
e calJac3.chrUn_GL286223      38510 0 +    132061 C

a score=545913.000000
s hg38.chr6_GL000254v2_alt   914874 53 +   4827813 gagatttctttaagctctttgcctagggtcacaGGTCTTTCCACAGGACCGTA
s panTro5.chr6             29877783 53 + 175400573 gagatttctttaagctctttgcctagggtcacaGGTCTTTCCACAGGACCGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30112428 53 + 173848474 gagatttctttaagctctttgcctagggtcacaGGTCTTTCCACAGGACCGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5911045 53 +   6154872 gagatttctttaagctctttgcctagggtcacaGGTCTTTCCACAGGACCGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74625274 53 + 122973662 GAGATTTCTTTAAGCTCTTGGCCTAGGGTCACAGGTCTTTCCACAGGACCGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30109205 53 + 172585720 gagatttctttaaggtctttgcccagggtcacaGGTCTTTCCACAGGACCACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29772928 53 - 170955103 gagatttctttaaggtctttgcccagggtcacaGGTCTTTCCACAGGACCACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2819639 53 -   2996164 gagatttctttaaggtctttgcccagggtcacaGGTCTTTCCACAGGACCACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     569756 53 +    766320 gagatttctttaaggtctttgcccagggtcacaGGTCTTTCCACAGGACCGTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29026360 53 -  71996105 gagatttctttaaggtctttgcccagggtcacaGGTCTTTCCACAGGACCGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     211903 53 +    290775 gagatttctttaaggtctttgcccagggtcacaGGTCTTTCCACAGGACCGTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2661865 53 -   3067355 gagatttctttaaggtctttgcctagggtcacaGGTCTTTCCACAGGACCGTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      38510 53 +    132061 gaggtttctttaagctctctgcctagggtcaGAGGTCTTTCCACAGGACCACA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     247651 45 -   1771730 gaggtttctttaagctctctgcctagggtcacaGGTCTTT--------CCACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     332031 53 -    457564 gaggtttctttaagctctctgcccagggtcacaGGTCTTTCCACAGGACCACA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           137847 53 +  18854210 gaggtttctttaagctctctgctcagggtcacaGGTCTTCCTGCAGGACAGTA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            66007 46 +    102524 gaggttaccccatg-----tgccccgggtcacgggtcctcccacaggaccg--
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e mm10.chr17               57952502 5399 -  94987271 I
e proCoq1.NW_012152574v1     631289 464 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I

a score=449169.000000
s hg38.chr6_GL000254v2_alt   914927 44 +   4827813 GACTAGAGTCAGATGTGTTCCTCAATCAATTAGGAAAGGGTGGT
s panTro5.chr6             29877836 44 + 175400573 GACTAGAGTCAGATGTGTTCCTCAATCAATTAGGAAAGGGTGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30112481 44 + 173848474 GACTAGAGTCAGATGTGTTCCTCAATCAATTAGGAAAGGGTGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5911098 44 +   6154872 GACTAGAGTCAGATGTGTTCCTCAATCAATTAGGAAAAGGTGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74625327 44 + 122973662 GACTAGAGTCAGATGTGTTCCTCAATCAGTTAGGAAAGGGTGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30109258 44 + 172585720 GACTGGAGTCAGATGTGTTCCTCAATCAGTTAGGAAAGGGTGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29772981 44 - 170955103 GACTGGAGTCAGATGTGTTCCTCATTCAGTTAGGAAAGGGTGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2819692 44 -   2996164 GACTGGAGTCAGATGTGTTCCTCAATCAGTTAGGAAAGGGTGGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     569809 44 +    766320 GACTGGAGTCAGATGTGTTCCTCAATCAGTTAGGAAAGGGTGGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29026413 44 -  71996105 GACTGGAGTCAGATGTGTTCCTCAATCAGTTAGGAAAGGCTGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     211956 44 +    290775 GACTGGAGTCAGATGTGTTCCTCAATCAGTTAGGAAAGGGTGGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2661918 44 -   3067355 GACTGCAGTCAGATGTGTTCCTCAATCAGTTAGGAAAGGGTGGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      38563 44 +    132061 GACTAGAGTCAGACGTGTTCCTCAATCAGCTAGGAACGAGTGGC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     247696 44 -   1771730 GACTAGAGTCAGATGTGTTCCTCAATCAGCTAGGAACGAATGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     332084 44 -    457564 GACTAGAGTCAGATGTGTTCCTCAATCAGCTAGGAACGAGTGGC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           137900 44 +  18854210 AACTGGAGTCTGATGTGTTGGTCAGTCAACAAGAAAAGGGCGGG
i otoGar3.GL873550         C 0 I 9
s mm10.chr17               57957901 44 -  94987271 GATTAGGGTCTCAGACATTCCTCAGTCAGTTAGGAAGGTGTAGA
i mm10.chr17               I 5399 C 0
s dasNov3.JH582591            66053 20 +    102524 ------------------------actgcctgggaacaggtgga
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               147074 5303 + 123392446 I
e proCoq1.NW_012152574v1     631289 464 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I

a score=1738621.000000
s hg38.chr6_GL000254v2_alt   914971 134 +   4827813 GCTGGAATTTGCATCTGAGTATTCCAAGCTTCT-------------------------------ATATTCTCATATTCTGGAATGAGGATATTATGAGTCCTGAAACAAC--------TCTAGAAATTCTAGGCTACATAATTATCCCTCCATAACGTGTTCTCTGCCAGAA-T
s panTro5.chr6             29877880 134 + 175400573 GCTGGAATTTGCATCTGAGTATTCCAAGCTTCT-------------------------------ATATTCTCATATTCTGGAATGAGGATATTATGAGTCCTGAAACAAC--------TCTAGAAATTCTAGGCTACATAATTATCCCTCCATAACGTGTTCTCTGCCAGAA-T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30112525 134 + 173848474 GCTGGAATTTGCATCTGAGTATTCCAAGCTTCT-------------------------------ATATTCTCATATTCTGGAATGAGGATATTATGAGTCCTGAAACAAC--------TCTAGAAATTCTAGGCTACATAATTATCCCTCCATAACGTGTTCTCTGCCAGAA-T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5911142 134 +   6154872 GCTGGAATTTGCATCTGAGTATTCCAAGCTTCT-------------------------------ATATTCTCATATTCTGGAATGAGGATATTATGAGTCCTGAAACAAC--------TCTAGAAATTCTAGGCTACATAATTATCCCTCCATAACGTGTTCTCTGCCAGAA-T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74625371 134 + 122973662 GCTGGAATTTGCATCTGAGTATTCCAAGCTTCT-------------------------------ATATTCTTATATTCTGGAATGAGGATATTATGAGTCCTGAAACAAC--------TCTAGAAATTCTAGGCTACATAATCATCCCTCCATAAAGTGTTCTCTGCCAGAA-T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30109302 134 + 172585720 GCTGGGATTTGCATCTGAGTATTCCAAGTTTCT-------------------------------ATATTCCCATATTCTGGAATGAGGATATTATGAGTCCTGAAACAAC--------TCTAGAAATTCTAGGCTACATAATTATCCCTCCATAAAGTGTCCTCTGCCAGAA-C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29773025 134 - 170955103 GCTGGGATTTGCATCTGAGTATTCCAAGTTTCT-------------------------------ATATTCCCATATTCTGGAATGAGGATATTATGAGTCCTGAAACAAC--------TCTAGAAATTCTAGGCTACATAATTATCCCTCCATAAAGTGTCCTCTGCCAGAA-C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2819736 134 -   2996164 GCTGGGATTTGCATCTGAGTATTCCAAGTTTCT-------------------------------ATATTCCCATATTCTGGAATGAGGATATTATGAGTCCTGAAACAAC--------TCTAGAAATTCTAGGCTACATAATTATCCCTCCATAAAGTGTCCTCTGCCAGAA-C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     569853 134 +    766320 GCTGGGATTTGCATCTGAGTATTCCAAGTTTCT-------------------------------ATATTCCCATATTCTGGAATGAGGATATTATGAGTCCTGAAACAAC--------TCTAGAAATTCTAGGCTACATAATTATCCCTCCATAAAGTGTCCTCTGCCAGAA-C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29026457 134 -  71996105 GCTGGGATTTGCATCTGAGTATTCCAAGTTTCT-------------------------------ATATTCCCATATTCTGGAATGAGGATATTATGAGTCCTGAAACAAC--------TCTAGAAATTCTAGGCTACATTATTATCCCTCCATAAAGTGTTCTCTGCCAGAA-C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     212000 134 +    290775 GCTGGGATTTGCATCTGAGTACCCCAAGTTTCT-------------------------------ATATTCCCATATTCTGGAATGAGGATATTATGAGTCCTGAAACAAC--------TCTAGAAATTCTAGGCTACATAATTATCCCTCCATAAAGTGTCCTCTGCCAGAA-C
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2661962 134 -   3067355 GCTGGGATTTGCATCTGAGTATTCCAAGTTTCT-------------------------------ATATTCCCATATTCTGGAATGAGGATATTATGAGTCCTGAAACAAC--------TCTAGAAATTCTAGGCTACATAATTATCCCTCCATAAAGTGTTCTCTGCCAGAA-C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      38607 133 +    132061 GCT-GAATTTGCGTCTGAGTGTTCCAAACTTCT-------------------------------ATATCCTCATATTCTGGAATGAGGATATTATGAGTCCCGAAACAGC--------TCTAGAAATTCTAGGCTACATAATTATCCCTACATATAGTGTTCTCTGCCAGGA-G
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     247740 132 -   1771730 GCT-GAATTTGCATCTGAGTGTTCCAAACTTCT-------------------------------ATATCCTCATATTCTGGAATGAGGATATTATGAGTCCCGAAACAGC--------TCTAG-AATGCTAGGCTACATAATTATCCCTGCAGATAGTGTTCTCTGCCAGGA-G
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     332128 133 -    457564 GAT-GAATTTGCATCTGAGTGTTCCAAACTTCT-------------------------------ATATCCTCATATTCTGGAATGAGGATATTATGAGTCCCGAAACAGC--------TCTAGAAATTCTAGGCTACATAATTATCCTTACATATAGTGTTCTCTGCCAGGA-G
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               152377 133 + 123392446 GCTGGAATGTGCATCTGAGTATTCTAAGCTTCT-------------------------------ATATATCCATATTTTGGAGTGAGGATATTATGAGTCCTGAAAGAGC--------TCTAGAAATTCCGGACTACTTAATTGTCCCTCCATATAGTTTTCTCTGCTACAA--
i micMur3.chr6             I 5303 C 0
s proCoq1.NW_012152574v1     631753 134 +    730504 GCTGGAATGTGCATCTGAGTATTCTAAGCTTCT-------------------------------ATATATCCATATTTCGGAGTGAGGATATTATGAGTCCTGAAAGAGC--------TCTAGAAATTCCGGACTACTCAATTATCCCTCCATATAGTTTTCTCTGCTACAAG-
i proCoq1.NW_012152574v1   I 464 I 19
s otoGar3.GL873550           137953 141 +  18854210 TCTGGAACGTGTATCTGAGTACTCTAAGCTTCT-------------------------------ATATATCCATATTTTGGAATGAGGATATTATGAGTCCTGAAAGAGCTCTAGAAATCTAGAAATTCCGGGCTACATAATTATCTCTCCATGTAATTTTCTCTGCTACAA--
i otoGar3.GL873550         I 9 C 0
s mm10.chr17               57957945 138 -  94987271 CCTAGAGTCCGCATTTAGGAATTTCA--CTTCT--------------GACAGAGATGAAGAAACAAGGTCCCTCATATTGGAATAAAAAT-----------TCAAATAGC--------TCTAGCAATTCCAGGCTACATACTTACACCGTTATATAGTTTTCTCTACTAGGA-A
i mm10.chr17               C 0 I 29
s dasNov3.JH582591            66073 160 +    102524 gctggaatttgtacctggacggtccatgctcctccgcctcttaTTTTGGTGAGCATGGCA----GGGCCTCCACATTTTGGGATGAGGGTATCGTGAGTCCTGAAGGAGC--------TCTAGAAACTCAGGTCCATATAATTATCCCTCCACCAAGTCTTCTCTGCTAGAA--
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26249026 1817 +  26524999 I

a score=-22258.000000
s hg38.chr6_GL000254v2_alt   915105 17 +   4827813 AATAA---------------------------------------TGA-AAAA------AAAG-----------T-
s panTro5.chr6             29878014 17 + 175400573 AATAA---------------------------------------TGA-AAAA------AAAG-----------T-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30112659 17 + 173848474 AATAA---------------------------------------TGA-AAAA------AAAG-----------T-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5911276 16 +   6154872 AATAA---------------------------------------TG--AAAA------GAAG-----------T-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74625505 18 + 122973662 AATAA---------------------------------------TAATAAAA------AAAG-----------T-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30109436 12 + 172585720 --------------------------------------------AAA-AAAA------AAAA-----------T-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29773159 14 - 170955103 ---AA---------------------------------------AAA-AAAA------AAAA-----------T-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2819870 11 -   2996164 ---------------------------------------------AA-AAAA------AAAA-----------T-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     569987 14 +    766320 ---AA---------------------------------------CAA-CAAC------AAAA-----------T-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29026591 13 -  71996105 ----A---------------------------------------AAA-AAAA------AAAA-----------T-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     212134 13 +    290775 ----A---------------------------------------ACA-ACAA------AAAA-----------T-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2662096 12 -   3067355 --------------------------------------------AAA-AAAA------AAAT-----------T-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      38740 13 +    132061 AAGGA---------------------------------------AAA-AAAC---------------------T-
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     247872 27 -   1771730 AAGGa---------------------------------------aaa-aaaa------aaaa-aaaaaaaaCGT-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     332261 20 -    457564 AAGAA---------------------------------------AAA-AAAA------AAAA-AAG-------T-
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               152510 22 + 123392446 GATAA---------------------------------------AAA-AAAAGACCATGAAG-------------
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           138094 17 +  18854210 GACAA---------------------------------------AAA-AAAA------AAAGC------------
i otoGar3.GL873550         C 0 I 7
s mm10.chr17               57958112 56 -  94987271 GATAAGAGAGCAAGCCTATTCAGTTAGATCCTGGGTCGAACCCCAGA-AAAG------AAAA-----------C-
i mm10.chr17               I 29 I 11
s dasNov3.JH582591            66233 10 +    102524 ------------------------------------------------AACA------AAGG-----------CT
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     631887 19 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I

a score=2552245.000000
s hg38.chr6_GL000254v2_alt   915122 208 +   4827813 ACTGTGGTGGCCA-----GACCCCAAGATGATTGGCGAAGTGAAAGTTGCCCAGTTCCAAAATGGCCACCACCGCACTTTC----CTGGCGTCGGAGCGACTACGTAGTGACAGAAGGACCATCAGCAGGTGGGTGCTCACAGGGACTGTGCCAGTTGCCAAACTGGCCACCTGGGCCTTTCTTCT---CCTGAGCAAC-AGCCAAGCAACATTATAGGCT
s panTro5.chr6             29878031 208 + 175400573 ACTGTGGTGGCCA-----GACCCCAAGATGATTGGCGAAGTGAAAGTTGCCCAGTTCCAAAATGGCCACCACCGCACTTTC----CTGGCGTCGGAGCGACTACGTAGTGACAGAAGGACCATCAGCAGGTGGGTGCTCACAGGGACTGTGCCAGTTGCCAAACTGGCCACCTGGGCCTTTCTTCT---CCTGAGCAAC-AGCCAAGCAACATCATAGGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30112676 208 + 173848474 ACTGTGGTGGCCA-----GACCCCAAGATGATTGGCGAAGTGAAAGTTGCCCAGTTCCAAAATGGCCACCACCGCACTTTC----CTGGCGTCGGAGCGACTACGTAGTGACAGAAGGACCATCAGCAGGTGGGTGCTCACAGGGACTGTGCCAGTTGCCAAACTGGCCACCTGGGCCTTTCTTCT---CCTGAGCAAC-AGCCAAGCAACATCATAGGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5911292 208 +   6154872 ACTGTGGTGGCCA-----GACCCCAAGATGATTGGCGAAGTGAAAGTTGCCCAGTTCCAAAATGGCCACCACCGCACTTTC----CTGGCGTCGGAGCGACTACGTAGTGACAGAAGGACCATCAGCAGGTGGGTGCTCACAGGGACTGTGCCAGTTGCCAAACTGGCCACCTGGGCCTTTCTTCT---CCTGAGCAAC-AGCCAAGCAACATTATAGGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74625523 208 + 122973662 ACTGTGGTGGCCA-----GACCCCAAGATGATCGGCGAAGTGAAAGTTGCCCAGTTCCAAAATGGCCACCACCGCACTTTC----CTGGCGTCGGAGCGACTACGTAGTGACAGAAGGACCATCAGCAGGTGGATGCTCACAGGGACTGTGCCAGTTGCCAAACTGGCCACCTGGGCCTTTCTTCT---CCTGAGCAAC-AGCCAAGCAACATTATAGGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30109448 206 + 172585720 ACTGTGGTGGCCA-----GACCCCACGATGACTGGGGAAGT--AAGTTGCCCAGTTCCAAAATGGCCACCACCGCGCTTTC----CTGGCGTCGGAGCGACTACGTAGTGACAGAAGGACCATCACCAGGTGGGTGCTCACAGGGCCTGAGCCAGTTGCCAAACTGGCCACCTGGGCCTTTCTTCT---CCTGAGCAAC-AGCCAAGCAACATTATAGGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29773173 206 - 170955103 ACTGTGGTGGCCA-----GACCCCACGATGACTGGGGAAGT--AAGTTGCCCAGTTCCAAAATGGCCACCACCGCGCTTTC----CTGGCGTCGGAGCGACTACGTAGTGACAGAAGGACCATCACCAGGTGGGTGCTCACAGGGCCTGAGCCAGTTGCCAAACTGGCCACCTGGGCCTTTCTTCT---CCTGAGCAAC-AGCCAAGCAACATTATAGGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2819881 206 -   2996164 ACTGTGGTGGCCA-----GACCCCACGATGACTGGGGAAGT--AAGTTGCCCAGTTCCAAAATGGCCACCACCGCGCTTTC----CTGGCGTCGGAGCGACTACGTAGTGACAGAAGGACCATCACCAGGTGGGTGCTCACAGGGCCTGAGCCAGTTGCCAAACTGGCCACCTGGGCCTTTTTTCT---CCTGAGCAAC-AGCCAAGCAACATTATAGGCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570001 206 +    766320 ACTGTGGTGGCCA-----GACGCCACGATGACTGGGGAAGT--AAGTTGCCCAGTTCCAAAATGGCCACCACTGCGCTTTC----CTGGCGTCGGAACGACTACGTAGTGACAGAAGGACCATCACCAGGTGGGTGCTCACAGGGCCTGGGCCAGTTGCCAAACTGGCCACCTGGGCCTTTCTTCT---CCTGAGCAAC-AGCCAAGCAACATTATAGGCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29026604 206 -  71996105 ACTGTGGTGGCCA-----GACGCCACGATAACTTGGGAAGT--AAGTTGCCCAGTTTCAAAATGGCCACCACCGCGCTTTC----CTGGCGTCGGAGCGACTACGTAGTGACAGAAGGACCATCACCAGGTGGGTGCTCACAGGGCCTGAGCCAGTTGCCAAACTGGCCACCTGGGCCTTTCTTCT---CCTGAGCAAC-AGCCAAGCAACATTATAGGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     212147 206 +    290775 ACTGTGGTGGCCA-----GACGCCACGATGACTGGGGAAGT--AAGTTGCCCAGTTCCAAAATGGCCACCACTGCGCTTTC----CTGGCGTCGGAACGACTACGTAGTGACAGAAGGACCCTCACCAGGTGGGTGCTCACAGGGCCTGGGCCAGTTGCCAAACTGGCCACCTGGGCCTTTCTTCT---CCTGAGCAAC-AGCCAAGCAACATTATAGGCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2662108 206 -   3067355 ACTGTGGTGGCCA-----GACCCCACGCTGACTTGGGAAAT--AAGTTGCCCAGTTCCAAAATGGCCACCACCGCGCTTTC----CTGGCGTCGGAGCGACTACGTAGTGACAGAAGGACCATCACCAGGTGAGTGCTCACAGGGCCTGGGCCAGTTGCCAAACTGGCCACCTGGGCCTTTCTTCT---CCTGAGCAAG-GGCCAAGCAACATTATAGGCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      38753 207 +    132061 ACTGTGATGGCCA-----GGCCCCAAGATGACTGGCGAAGTGAAAGTTGCCCAATTCCAAAATGGCCACCACCGCGCTTTC----CTGGCGTCGCAGCGACTACGTA-TGACAGAAGGACCATCACCAGGTGGGTGTTCACAGGGACTGGGCCAGTTGCGAAACTGGCCACCTGGGTCTTTCTTCT---CCTGAGCAAC-AGCCAAGCAACATTATAGGCT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     247899 207 -   1771730 ACTGTGATGGCCA-----GGCCCCAAGATGATTGGCGAAGTGAAAGTTGCCCAATTCCAAAATGGCCACCACCGCGCTTTC----CTGGCGTCGCAGCGACTACGTA-TGACAGAAGGACCATCACCAGGTGGGTGCTCACAGGGACTGGGCCAGTTGCCAAACTGGCCACCTGGATCTTTCTTCT---CCTGAGCAAC-AGCCAAGCAACATTATAGGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     332281 207 -    457564 ACTGTGATGGCCA-----GGCCCCAAGATGATTGGTGAAGTGAAAGTTGCCCAATTCCAAAATGGCCACCACCGCGCTTTC----CTGGCGTCGCAGCGACTACGTA-TGACAGAAGGACCATCACCAGGTGGGTGCTCACAGGGACTGGGCCAGTTGCCAAACTGGCCACCTGGGTCTTCCTTCT---CCTGAGCAAC-AGCCAAGCAACATTATAGGCT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               152532 208 + 123392446 ACTCTGCTTGCCA-----GGCTCCGAGATGATTGGCCAAGTGACAGTTGTCCAGTTCCAAAATGGCCACCATGGCATTTTC----CTGGCGTCGGGGCGACAACATAGTAACGGAAGGGCCATCACCAGGTGAGCGCGCCCCGGGGCTGGGCCAGGTGCCTAGCTGG-CCCCTGGCTCTTCCTTCT---CCTCAGCTACCGGCCAAGCAGCATTATAGGCT
i micMur3.chr6             C 0 I 162
s proCoq1.NW_012152574v1     631906 208 +    730504 ACTGTGCTCGCCA-----GGCTCGAAGATGACTGGCGAAGCGACAGTTGCCCAGTTCCAAAATGGCCACCACAACGTTTTC----CAGGTGTCGGGGCGACTACGTAGTGACGGGAGGGCCATCGCCAGGTGAGCGCG-CCCGGGACTGGGCCAGGTGCCCAACTGGCCCCCTGGCTCTTCCTTCT---CCTGAGCTACTGGCCAAGCAGCATTACAGGCT
i proCoq1.NW_012152574v1   I 19 I 162
s otoGar3.GL873550           138118 209 +  18854210 TCCGTGTTTTCCA-----GGCTTCAAGATTATTGGCGAAATGATAGTTGCCCAGTTCCAAAATGGCCACCACTGCGTTTTC----CCAGTGTAGGAGTGACTGCATAGTGACAGAAGGGCCATCACCAGGTGAGCGCTCCCAGGGACTGAGCCAAGAACCAAATTAGCCACTTGGGTCTTCCTCCT---CCTGAGCTATTGGCCAAGCAACATTAATAACC
i otoGar3.GL873550         I 7 I 1
s mm10.chr17               57958179 145 -  94987271 ACTGTA------A-----GATTCCAAGATGGTCTACAATGGGACAGCTGCTCAGCTTGGAAA--ACCGCCTGAGCACACTCGTCGCTGGCGTCATTGCCAC--CGAGGTGATTGACAGCCCACCAAGAGGCG-----------------------------------------GGGCCTCCCTTTC---CA---------GGTC--------TTGATGGCT
i mm10.chr17               I 11 C 0
s dasNov3.JH582591            66243 203 +    102524 ---------GCCATTGGCGTCTCCAAGGTGA-TAGTGATAAGACAGATGTCTAATTCCAAAAT-GTCGCCGCAGCATTTTC----CTGGCATCAGTATGACTATGCAGCGACAGACGTGCCATCACCAGGTGGGTGAGGTCGGGGACTGC-CCAGGTGCCAGAATGGCC-CCCGGGTCTTTGTCTCGTGTCTGAGCTGTGGGCCAAGCACTGTAGGAGGC-
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26249026 1817 +  26524999 I

a score=1394530.000000
s hg38.chr6_GL000254v2_alt   915330 164 +   4827813 TCAGGCCTACCTAGCCCAGGCTGGGTTAAAGCAGATAAACGAAGCGGACAGCGGAGGAAAAGCACGTAACCAAGTGCAGTGGGTCTGAAGCGAAAG-GCAAGAAAAGCTCTG-----------CCCTTAGGAACGGGGTGTCACTGCGCGGCTCG----CAGGCACCTCTCTTTGACCTA
s panTro5.chr6             29878239 164 + 175400573 TCAGGCCTACCTAGCCCAGGCTGGGTTAAAGCAGATAAACGAAGCGGACAGCGGAGGAAAAGCACATAACCAAGGGCAGTGGGTCTGAAGCGAAAG-GCAAGAAAAGCTCTG-----------CCCTTAGGAACGGGGTGTCACTGCGCCGCTCG----CAGGCACCGCTCTTTGACCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30112884 164 + 173848474 TCAGGCCTACCTAGCCCAGGCTGGGTTAAAGCAGATAAACGAAGCGGACAGCGGAGGAAAAGCACATAACCAAGGGCAGTGGGTCTGAAGCGAAAG-GCAAGAAAAGCTCTG-----------CCCTTAGGAACGGGGTGTCACTGCGCCGCTCG----CAGGCACCGCTCTTTGACCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5911500 164 +   6154872 TCAGGCCTACATAGCCCAGGCTGGGTTAAAGCAGATAAACGAAGCGGACAGCGGAGGAAAAGCACGTAACCAAGTGCAGTGGGTCTGAAGCGAAAG-GCAAGAAAAGCTCTG-----------CCCTTAGGAACGGTGTGTCACTGCGCCGCTCG----CAGGCACCTCTCTTTGACCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74625731 164 + 122973662 TCAGGCCTACCTAGCCCAGGCTGGGTTAAAGCAGATAAACGAAGCGGACAGCGGAGGAAAAGCACGTAACCAAGGGCAGTGGGTCCGAAACGAAAG-GCAAGAAAGGCTCTG-----------CCCTTAGGAACGGGGTGTCACTGCGCCGCTCG----CAGGCACCTCTCTTTGACCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30109654 164 + 172585720 TCAGGCCTACCTAGCCCAGGCTGGGTTAAAGCAGATAAACGAAGCAGGCAGCGGAGAAAAAGCACGTAACCAAGGGCAGTGTGTCTGATGCGAAAG-GCAAGAAAGACTCTG-----------CGCGTAGGAACCGGGTGTTACTGGGCCGCTCG----CATACACCTCTCTTTGACTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29773379 164 - 170955103 TCAGGCCTACCTAGCCCAGGCTGGGTTAAAGCAGATAAACGAAGCAGGCAGCGGAGAAAAAGCACGTAACCAAGGGCAGTGTGTCTGATGCGAAAG-GCAAGAAAGACTCTG-----------CGCGTAGGAACCGGGTGTCACTGGGCCGCTCG----CATACACCTCTCTTTGACTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820087 164 -   2996164 TCAGGCCTACCTAGCCCAGGCTGGGTTAAAGCAGATAAACGCAGCAGGCAGCGGAGAAAAAGCACGTAACCAAGGGCAGTGTGTCTGATGCGAAAG-GCAAGAAAGACTCTG-----------CGCGTAGGAACCGGGTGTCACTGGGCCGCTCG----CTTACACCTCTCTTTGACCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570207 164 +    766320 TCAGGCCTACCTAGCCCTGGCTGGGTTAAAGCAGATAAACGAAGCAGGCAGCGGAGAAAAAGCACGTAACCAAGGGCAGTGTGTCTGATGCGAAAG-GCAAGAAAGGCCCTG-----------CGCGTAGGAACCGGGTGTCACTGGGCCGCTCG----CATACACCTCTCTTTGACCTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29026810 162 -  71996105 TCAGGCCTACCTAGCCCAGGCTGGGTTAAAGCAGATAAACGAAGCAGGCAGCGGAGAAAAAGCACATAACCAAGGACAGTGTGTCTGATGCGAAAG-GCAAGAAAGGCTCTG-----------CGCGTAGGAACTGGGTGTCACTGGGCCGCTCG----CATACAC--CTCTTTGACCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     212353 164 +    290775 TCAGGCCTACCTAGCCCTGGCTGGGTTAAAGCAGATAAACGAAGCAGGCAGCGGAGAAAAAGCACGTAACCAAGGGCAGTGTGTCTGATGCGAAAG-GCAAGAAAGGCCCTG-----------CGCGTAGGAACCGGGTGTCACTGGGCCGCTCG----CATACACCTCTCTTTGACCTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2662314 164 -   3067355 TCAGGCCTACCTAGCCCAGGCTGGGTTAAAGCAGATAAACGAAGCAGGCAGCGGAGAAAAAGCACGTAACCAAGGGCAGTGTGTCTGATGCGAAAG-GCAAGAAAGGCTCTG-----------CCCGTAGGAACCGGGTGTCACTAAGCAGCTCG----CGTACACCTCTCTTTGACCTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      38960 161 +    132061 TCAGGCTTCCCTAGCCGAGGCTGGGTTAAAGCAGATAAACGAAGCGGACAGCGGAGGAAGAG--------------CAGCGGGTCTGAAGCGAAAG-GCAAGAAAGGCACTGTAAGCTCTGTTCCTGTAGGAACGGGGTGTCATGGCGCCGCTCG----CAAGCACCGCTCTTTGACCTA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     248106 161 -   1771730 TCAGGCCTCCCTAGCCGAGGCTGGGTTAAAGCAGATAAACGAAGCGGACAGCGAAGGAAAAG--------------CAGTGGGTCTGAAGCGAAAG-GCAACAAAGGCACTGCAGGCTCTGTTCCTGTAGGAGCCGGGTGTCACGGCGCTGCTCG----CAAGCATCTCTCTTTGACCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     332488 161 -    457564 TCAGGCTTCCCTAGTCGAGGCTGGGTTAAAGCAGATAAACGAAGCGGACAGCGGAGGAAAAG--------------CAGTGGGTCTGAAGCGAAAG-GCAAGAAAGGCACTGTGCGCTCTATTCCTGTAGGAACCGGGTGCCATGGCGCCGCTCG----CAAGCATCTCTCTTTGACCCA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           138328 169 +  18854210 CCACATCTCCTTAGTCTAGGCTGGACTAAAGCAGAGAAATGAAACTGGCTGCGGAGGAAAAGTAGGTAACAAAAGGCAGAGGGTCTGAAGTAACAGAGCAAGTAAGACTTTG-----------CCTATAGAAACTGGGAGTCACTGCGCGGCGCAGACCGAGGCACCTCACTTTGACCCA
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57958324 134 -  94987271 GCGGGTCCACACTGTACCGACCAG------------AAACAAAATGGACAGTG-AGGAAAAGCAGGTGACCAGAAGCAGCAAGCCTGAAGCGAAAGGGTTAGCTAGGTTTTT-----------CCTGAGAGGATCGGGTATCACAGCGACGCTGG----CAG------------------
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            66446 106 +    102524 TCAG--CCACC---CCCTGACTGGCC------------ATGAAGTGGACAGTA-AGGACAGGCAGATGA--AAGGGCAA-GGCTCTGGGGAAAGAG-GGATAGAGGGCTAGA-----------------GGGCTTGGCCCCCACA-----------------------------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               152740 162 + 123392446 I
e proCoq1.NW_012152574v1     632114 162 +    730504 I
e canFam3.chr35            26249026 1817 +  26524999 I

a score=119923.000000
s hg38.chr6_GL000254v2_alt   915494 11 +   4827813 TTTATAATCTG
s panTro5.chr6             29878403 11 + 175400573 TTTATAATCCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113048 11 + 173848474 TTTATAATCCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5911664 11 +   6154872 TTTATAATCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74625895 11 + 122973662 TTTGTAATCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30109818 11 + 172585720 TTTGTAATCGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29773543 11 - 170955103 TTTGTAATCGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820251 11 -   2996164 TTTGTAATCGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570371 11 +    766320 TTTGTAATCGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29026972 11 -  71996105 TTTGTAATCGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     212517 11 +    290775 TTTGTAATCGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2662478 11 -   3067355 TTTGTAATCGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      39121 11 +    132061 TTTGTAATCGG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     248267 11 -   1771730 TTTGTAATCGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     332649 11 -    457564 TTTGTAATCGG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               152902 11 + 123392446 TTTATAATCAC
i micMur3.chr6             I 162 C 0
s proCoq1.NW_012152574v1     632276 11 +    730504 TTTATAATCAC
i proCoq1.NW_012152574v1   I 162 C 0
s otoGar3.GL873550           138497 11 +  18854210 TTTGTAATTAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57958458  8 -  94987271 ---ATGCTAGA
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            66552 11 +    102524 TTTGCCATCAC
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26249026 1817 +  26524999 I

a score=728010.000000
s hg38.chr6_GL000254v2_alt   915505 53 +   4827813 CGCCTTATTCTCCGCCCCCAAAGGCTGCTGGCAACCAATTCTCGGTGGCGAAG
s panTro5.chr6             29878414 53 + 175400573 CGCCTTATTCTCCGCCCCCAAAGGCTGCTGGCAACCAATTCTCGGTGGTGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113059 53 + 173848474 CGCCTTATTCTCCGCCCCCAAAGGCTGCTGGCAACCAATTCTCGGTGGTGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5911675 53 +   6154872 CGCCTTATTCTCCGCCCCCAAAGGCTGCTGGCAACCAATTCTCGGTGGTGAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74625906 53 + 122973662 CGCCTTATTCTCCGCCCCCAAGGGCTGCTGGCAACCAATTCTCGGTGGTGAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30109829 53 + 172585720 CGCCTTATTCTCCGCCCTCAAAGGCTCCTGGCAACCAATTCTCGGTGGTGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29773554 53 - 170955103 CGCCTTATTCTCCGCCCCCAAAGGCTCCTGGCAACCAATTCTCGGTGGTGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820262 53 -   2996164 CGCCTTATTCTCCGCCCCCAAAGGCTCCTGGCAACCAATTCTCGGTGGTGAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570382 53 +    766320 CGCCTTATTCTCCGCCCCCAAAGGCTCCTGGCAACCAATTCTCGGTGGTGAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29026983 53 -  71996105 CGCCTTATTCTCCGCCCCCAAGGGCTCCTGGCAACCAATTCTCGGTGGTGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     212528 53 +    290775 CGCCTTATTCTCCGCCCCCAAAGGCTCCTGGCAACCAATTCTCGGTGGTGAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2662489 53 -   3067355 CGCCTTATTCTCCGCCCCCAAAGGCTCCTGGCAACCAATTCTCGGTGGTGAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      39132 53 +    132061 CGCCTTATTCTCCGCCCCCAAAGGCTCCTGGCAACCAATTCTCGGTGGTGACG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     248278 53 -   1771730 CGCCTTATTCTCCGCCCCCAAAGGCTCCTGGCAACCAGTTCTCGGTGGTGATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     332660 53 -    457564 CGCCTTATTCTCCGCCCCCAAAGGCTCCTGGCAACCGATTCGCGGTGATGATG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               152913 53 + 123392446 CGCTTTATTCTCCGCCCCCAAAGGCTCCTGGCAGCCAATTCTCGATGCCGAAG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     632287 53 +    730504 CGCTTTATTCTCCGCCCCCAAAGACTCCTGGCAGCCAATTCTCGGTGCCGAAG
i proCoq1.NW_012152574v1   C 0 I 453
s otoGar3.GL873550           138508 53 +  18854210 CGCTGCCTTCTCCGCCCCCAAAGTCCGCTAGCAACCAATTCTCGGTGGTGAAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57958466 50 -  94987271 GGCCCACTCCCCTGTCTCC---TGGTCCTGGCAACCAATTCTGGGTGATCAGG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26250843 49 +  26524999 CGCCGCCTCCTCCCCCT----GGATGCCCAACAACCAATTATCCGCGGCGGCG
i canFam3.chr35            I 1817 I 3
s dasNov3.JH582591            66563 15 +    102524 AGCCTTGTTCTCCCC--------------------------------------
i dasNov3.JH582591         C 0 C 0

a score=535184.000000
s hg38.chr6_GL000254v2_alt   915558 49 +   4827813 TCGT-----GACGTCAGCTGTTGCGGGTCAGATTGGGAGAGCTTCCTGGTCCTT
s panTro5.chr6             29878467 49 + 175400573 CCGT-----GACGTCAGCTGTTGCGGGTCAGATTGGGAGAGCTTCCTGGTCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113112 49 + 173848474 CCGT-----GACGTCAGCTGTTGCGGGTCAGATTGGGAGAGCTTCCTGGTCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5911728 49 +   6154872 TCGT-----GACGTCAGCTGTTGCGGGTCAGATTGGGAGAGCTTCCCGGTCCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74625959 49 + 122973662 CCGT-----GACGTCAGCTGTTGCGGGTCAGATTGGGAGAGCTTCCTGGTCCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30109882 49 + 172585720 CCGT-----GACGTCAGCTGTTGCGGGTCAGATTGGGAGAGCTTCCTGACCCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29773607 49 - 170955103 CCGT-----GACGTCAGCTGTTGCGGGTCAGATTGGGAGAGCTTCCTGACCCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820315 49 -   2996164 CCGT-----GACGTCAGCTGTTGCGGGTCAGATTGGGAGCGCTTCCTGACCCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570435 49 +    766320 CCGT-----GACGTCAGCTGTTGCGGGTCAGATTGGGAGAGCTTCCTGGCCCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027036 49 -  71996105 CCGT-----GACGTCAGCTGTTGCGGGTCAGATTGGGAGAGCTTCCTGGCCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     212581 49 +    290775 CCGT-----GACGTCAGCTGTTGCGGGTCAGATTGGGAGAGCTTCCTGGCCCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2662542 49 -   3067355 TCGT-----GACGTCAGCTGTTGCGGGTCAGATTGGGAGAGCTTCCTGGCCCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      39185 49 +    132061 CCGT-----GACGTCATCTGTTGCTGGGCAGATTGGGAGAGCTTCCTGGTCCTT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     248331 48 -   1771730 CCGT-----GACGTCAGCTGTTGC-GGGCAGACTGGGAGAGCTTCCTGGTCCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     332713 49 -    457564 CCGT-----GACGTCAGCTGTTGCGGGGCAGATTGGGAGAGCTTCCTGGTCCTT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               152966 50 + 123392446 CCGTA----GACGTCAGCGGTTACGGGGCAGACTGGGCGCGCCTCCGGGTCCTT
i micMur3.chr6             C 0 I 403
s otoGar3.GL873550           138561 47 +  18854210 TCATA----GACGTAAGTTGTCGCGGGGCAG---GAGAACGCCTCTTGGTCCTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57958516 49 -  94987271 ----CGATGGACGTCA-CTGTTGCTGGGCAGACTAGAGGCCTCTTCTGTCCCCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26250895 48 +  26524999 CTGT-----GACGTCAGC-GTTGCCGGGCAGACCAGGGGTGCTTTAGGGCCTCC
i canFam3.chr35            I 3 C 0
s dasNov3.JH582591            66578  7 +    102524 ---------------------TGAGGGT--------------------------
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     632340 453 +    730504 I

a score=1212017.000000
s hg38.chr6_GL000254v2_alt   915607 137 +   4827813 ACCTAGCAAGATTCTGCC-GCTAGGT-GGCGAAAAGCGA-AGGGGCCAAAGAAATGG-AAAGAAGGCGAGGA------AAAGCGGGAGAAGATGGGGAAGGAAAATGTATATTCTTGTATCATCCTACAGCTA-GGCAAAAATATTAG
s panTro5.chr6             29878516 137 + 175400573 ACCTAGCAAGATTCTGCC-GCTAGGT-GGCGAAAAGCGA-AGGGGCCAAAGAAATGG-AAAGAAGGCGAGGA------AAAGCGGGAGAAGATGGGGAAGGAAAATGTATATTCTTGTATCATCCTACAGCTA-GGCAAAAATATTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113161 137 + 173848474 ACCTAGCAAGATTCTGCC-GCTAGGT-GGCGAAAAGCGA-AGGGGCCAAAGAAATGG-AAAGAAGGCGAGGA------AAAGCGGGAGAAGATGGGGAAGGAAAATGTATATTCTTGTATCATCCTACAGCTA-GGCAAAAATATTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5911777 137 +   6154872 ACCTAGCAAGATTCTGCC-GCTAGGT-GGCGAAAAGCGA-AGGGGCCAAAGAAATGG-AAAGTAGGCGAGGA------AAAGCGGGAGAAGATGGGGAAGGAAAATGTATATTCTTGTATCATCCTACAGCTA-GGTAAAAATATTAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626008 137 + 122973662 ACCCAGCAAGATCCTGCC-GCTAGGT-GGCGAAAAGCGA-AGGGGCCAAAGAAACGG-AAAGGAGGCGAGGA------AACGCGGGAGAAGATGGGGAAGGAAAATTTATATTCTTGTATCATCCTACAGCTA-GGCAAAAATATTAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30109931 137 + 172585720 ACCCCGCAATATCCCGCA-GCTAGGT-GGCGAAAAGCGA-AGGAGCCAAAGAAATGG-CAAGGAGGCGAGGA------AAAGCAGGAGAAGATGGGGAAGGAAAATTTATATTCTTGTATCATCCTACAGCTA-GGCAAAAATATTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29773656 137 - 170955103 ACCCCGCAATATCCCGCA-GCTAGGT-GGCGAAAAGCGA-AGGAGCCAAAGAAATGG-CAAGGAGGCGAGGA------AAAGCAGGAGAAGATGGGGAAGGAAAATTTATATTCTTGTATCATCCTACAGCTA-GGCAAAAATATTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820364 137 -   2996164 ACCCCGCAATATCCCGCA-GCTAGGT-GGCGAAAAGCGA-AGGAGCCAAAGAAATGG-CAAGGAGGCGAGGA------AAAGCAGGAGAAGATGGGGAAGGAAAATTTATATTCTTGTATCATCCTACAGCTA-GGCAAAAATATTGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570484 137 +    766320 ACCCGGCAATATCCCGCA-GCTAGGT-GGCGAAAAGCGA-AGGAGCCAAAGAAATGG-CAAGGAGGCGAGGA------AAAGCAGGAGAAGATGGGGAAGGAAAATTTATATTCTTGTATCATCCTACAGCTA-GGCAAAAATATTAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027085 137 -  71996105 ACCCCGCAATATCCCGCA-GCTAGGT-GGCGAAAAGCGA-AGGAGCCAAAGAAATGG-CAAGGAGGCGAGGA------AAAGCAGGAGAAGATGGGGAGGGAAAATTTATATTCTTGTATCATCCTACAGCTA-GGCAAAAATATTAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     212630 137 +    290775 ACCCGGCAATATCCCGCA-GCTAGGT-GGCGAAAAGCGA-AGGAGCCAAAGAAATGG-CAAGGAGGCGAGGA------AAAGCAGGAGAAGATGGGGAAGGAAAATTTATATTCTTGTATCATCCTACAGCTA-GGCAAAAATATTAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2662591 137 -   3067355 ACCCCGCAATATCCCGCA-GCTAGGT-GGCGAAAAGCGA-AGGAGCCAAAGAAATGG-AAAGGAGGCGAGGA------AAAGCAGGAGAAGATGGGGAAGGAAAATTTATATTCTTGTATCATCCTACAGCTA-GGCAAAAATATTAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      39234 138 +    132061 ACCCGGAAAGATCCTGCA-GCTAGGT-GGCGAAAAGTGA-AGCCGCCGGAGAAATGGAAAAGGAGTCCAGGA------AAGGCGGGAGAAGATGGGGAAGGAAAATTTATATTCTTGTATTAACCAACAGCTA-GGCAAAAATGTTAC
i calJac3.chrUn_GL286223   C 0 I 356
s cebCap1.NW_016107755v1     248379 137 -   1771730 ACCCGGAAAGATCCTGCA-GCTAGGT-GGCGAAAAGTGA-AGCTGCCCGAGAAATGG-AAAGGAGGCCAGGA------AAGCCTGGAAAAGATGGGGAAGGAAAATGTATATTCTTGTATCAACATACAGCTA-GGCAAAAATGTTAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     332762 137 -    457564 ACCCGGAAAGATCCTGCA-GCTAGGT-GGCGAAAAGTGA-AGCTGCCTGATGAATGG-AAAGAAGGCCAGGA------AAGGCGGGAGAAGATGGGGAAGGAAAATTTATATTCTTGTATCAACCTACAGCTA-GGCAAAAATATTAC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           138608 134 +  18854210 -ACCAGCAAGATCCTGCACAGGAGGC-AGCGGAAAGCAACCCGAACTAGGGAAATAG-GAAGAAGGCGAGAA------GAAGTGGTAAAAAAC-----AGGAAAATGTATATTCTTGTACCATCCTACAGCTAGGGAAAAAACGTTAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57958565  76 -  94987271 --CCCCCAAAGGCCTGCT-----------------GCAA-AGGTATCTCAGAAATGC-AGGGATGGAGAGGA------GA---GGGGAAAGACACTGAAAGAAAAC------------------------------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26250943 127 +  26524999 -ACTTGC-GGATCAGGCC-CTGGGGTAGGAGAACTGCGA-AGGTGCCAGGGGCATGG-AGAAGAGGCGGACAAGACCCAAAAcggggggcgggggggggggggAATTTATATTGT--------------GCTA-GAGAGGACCACAG-
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            66585  93 +    102524 --------------------------------------------CCCAGGAAGATGG-AGAGG-GACCAGGA-------GGGCGGGCAGAGAAGGGGAAGGAAAAGGCATGTTCTTGAAGGGTCCTACAGCTG-GAGAACACTCCGC-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               153016 403 + 123392446 I
e proCoq1.NW_012152574v1     632340 453 +    730504 I

a score=89700.000000
s hg38.chr6_GL000254v2_alt   915744 9 +   4827813 GATAATGTG
s panTro5.chr6             29878653 9 + 175400573 GATAATGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113298 9 + 173848474 GATAATGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5911914 9 +   6154872 GATAATGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626145 9 + 122973662 GATAATGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110068 9 + 172585720 GATAATGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29773793 9 - 170955103 GATAATGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820501 9 -   2996164 GATAATGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570621 9 +    766320 GATAATGTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027222 9 -  71996105 GATAATGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     212767 9 +    290775 GATAATGTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2662728 9 -   3067355 GATAATGTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      39728 9 +    132061 GATAATGTG
i calJac3.chrUn_GL286223   I 356 C 0
s cebCap1.NW_016107755v1     248516 9 -   1771730 GATAATGTG
i cebCap1.NW_016107755v1   C 0 I 331
s aotNan1.NW_018509740v1     332899 9 -    457564 GATAATGTG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           138742 9 +  18854210 GCTAATCCA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26251070 9 +  26524999 GGTTACCTA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            66678 9 +    102524 GGCCCTCTA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               153016 403 + 123392446 I
e mm10.chr17               57958641 0 -  94987271 C
e proCoq1.NW_012152574v1     632340 453 +    730504 I

a score=13073.000000
s hg38.chr6_GL000254v2_alt   915753 1 +   4827813 G
s panTro5.chr6             29878662 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113307 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5911923 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626154 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110077 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29773802 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820510 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570630 1 +    766320 G
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027231 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     212776 1 +    290775 G
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2662737 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      39737 1 +    132061 G
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     248856 1 -   1771730 G
i cebCap1.NW_016107755v1   I 331 C 0
s aotNan1.NW_018509740v1     332908 1 -    457564 G
i aotNan1.NW_018509740v1   C 0 I 394
s otoGar3.GL873550           138751 1 +  18854210 A
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26251079 1 +  26524999 G
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            66687 1 +    102524 G
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               153016 403 + 123392446 I
e mm10.chr17               57958641 0 -  94987271 C
e proCoq1.NW_012152574v1     632340 453 +    730504 I

a score=957800.000000
s hg38.chr6_GL000254v2_alt   915754 117 +   4827813 CCTAACCTCCAGTTCTATGT-TGgctggaaaatccaggaatgggaagctcactcccgtagt-----------------------------------------tcccactcattcccaccacggttggacagctctg----------------------aaggagggaaaattcttt---ctttt
s panTro5.chr6             29878663 117 + 175400573 CCTAACCTCCAGTTCTATGT-TGCCTGGAAAAtccaggaatgggaagctcactcccgtagt-----------------------------------------tcccactcattcccaccacagttggacagctctg----------------------aaggagggaaaattcttt---ctttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113308 117 + 173848474 CCTAACCTCCAGTTCTATGT-TGCCTGGAAAAtccaggaatgggaagctcactcccgtagt-----------------------------------------tcccactcattcccaccacagttggacagctctg----------------------aaggagggaaaattcttt---ctttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5911924 117 +   6154872 CCTAACCTCCAGTTCTATGT-TGgctggaaaatccaggaatgggaagctcactcccgtagt-----------------------------------------tcccactcattcccaccacggttgaacagctctg----------------------aaggagggaaaattcttt---ctttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626155 117 + 122973662 CCTAACCTCTAGTTCTATGT-TGgctggaaaatccaggaatgggaagctcacttccgcagt-----------------------------------------tcccactcattcccaccacggttggacagctctg----------------------aaggagggaaaattcttt---ctttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110078 117 + 172585720 CCTAACCTCCAGTTCTTGGT-TGgctggaaaatccaggaatgggaagctcactcccgcagc-----------------------------------------tcccactcattcccaccacggttggacagctctg----------------------aaggagggaaaattcttt---ctttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29773803 117 - 170955103 CCTAACCTCCAGTTCTTGGT-TGgctggaaaatccaggaatgggaagctcactcccgcagc-----------------------------------------tcccactcattcccaccacggttggacagctctg----------------------aaggagggaaaattcttt---ctttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820511 117 -   2996164 CCTAACCTCCAGTTCTTGGT-TGgctggaaaatccaggaatgggaagctcactcccgcagc-----------------------------------------tcccactcattcccaccacggttggacagctctg----------------------aaggagggaaaattcttt---ctttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570631 117 +    766320 CCTAACCTCCAGTTCTTGGT-TGgctggaaaatccaggaatgggaagctcactcccccagc-----------------------------------------tcccactcattcccaccacggttggacagctctg----------------------aaggagggaaaattcttt---ctttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027232 117 -  71996105 CCTAATCTCCAGTTCTTGGT-TGgctggaaaatccaggaatgggaagctcactcccgcagc-----------------------------------------tcccactcattcccaccacggttggacagctctg----------------------aaggagggaaaattcttt---ctttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     212777 117 +    290775 CCTAACCTCCAGTTCTTGGT-TGgctggaaaatccaggaatgggaagctcactcccgcagc-----------------------------------------tcccactcattcccaccacggttggacagctctg----------------------aaggagggaaaattcttt---ctttt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2662738 117 -   3067355 CCTAACCTCCAGTTCTTGGT-TGgctggaaaatccaggaatgggaagctcactcccgcagc-----------------------------------------tcccactcattcccaccacggttggacagctctg----------------------aaggagggaaaattcttt---ctttt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      39738 117 +    132061 CTTAACCTCCATTTCTAcct-tggctggaacatccgggaatgggagactcactcctggagt-----------------------------------------tcccactgattcccaccacggttggacagctctg----------------------gaggagggaaaagtattt---ctttg
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     248857 117 -   1771730 CCTAACCTCCAGTTCTATGT-TGgctggaacatccaggactgggaagttcactcctacagt-----------------------------------------tcccactgattcccgctgcggttggacagctctg----------------------aaggagggaaagttattt---ctttt
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           138752 109 +  18854210 CTGAACCTCTCGTTTTATGC-TGgtttggacatccaggaatggggagcttactcctgcagt-----------------------------------------t-------gttcccccaatagttggacagctttg----------------------gaag-gagaatctccttc---ctact
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57958641 171 -  94987271 -----------GCTCTGTGC-TGGCTTTCCGATCCA-GAACGGGACGCTCCTTCCTGCAGTCTTTCCCCACAAAGACTACAGCTCAAATAAACTTTGGGCCCTCCCCGCCATATCCtccgagacagggtttttctgtgtatccctggctTTGCAGACCAAACGGAAGAAATTATTTACACTATG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26251080 110 +  26524999 CCTAACCTCCTGCTGAGTGTCCAGCTATGGGAAGGAAGAGCGGGAAGCCCACTCTCTCTGC-----------------------------------------CCATGG--------GCCCTGGGTGGGCTGCTCCA----------------------ATGGAGAGAAGGTGCCtt---ttttt
i canFam3.chr35            C 0 I 463
s dasNov3.JH582591            66688  81 +    102524 CCTAATGGCCTGCTCAGCGG-TGGC-GTGAGCTCCA-AAATGGCAGGCTTGCTCC-ATGGC----------------------------------------------------CGCACCaagat---gctcctctg----------------------tacc----------------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               153016 403 + 123392446 I
e proCoq1.NW_012152574v1     632340 453 +    730504 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I

a score=1100307.000000
s hg38.chr6_GL000254v2_alt   915871 111 +   4827813 gagc--------tgaaatctgccttcagag-tcttgcacccaactgt---------------------tctaccccacggggacctacagaac-agcccaaagc----------------ctcttacgcaggacaacccATAGC--AGTTTGATTAAAAT
s panTro5.chr6             29878780 111 + 175400573 gagc--------tgaaatctgccttcagag-tcttgcacccaactgt---------------------tctaccccacggggacctacagaac-agcccaaagc----------------ctcttacgcaggacaacccATAGC--ATTTTGGTTAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113425 111 + 173848474 gagc--------tgaaatctgccttcagag-tcttgcacccaactgt---------------------tctaccccacggggacctacagaac-agcccaaagc----------------ctcttacgcaggacaacccATAGC--ATTTTGGTTAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912041 111 +   6154872 gagc--------tgaaatctgccttcagag-tcttgcacccaactgt---------------------tctaccccacggggacctacagaac-agcccaaagc----------------ctcttacgcaggacaacccATAGC--ATTTTGGTTAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626272 111 + 122973662 gagc--------tgaaatctgccttcagag-tctcgcacccaactgt---------------------tctaccccacggggacctacagaac-agcccaaagc----------------ctcttacacaggacaacccATAGC--ATTTTGGTTAAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110195 111 + 172585720 gagc--------tgaaatctgccttcagag-tctcgcatccaactgt---------------------tctaccccacggggacctacagaac-agcccaaagc----------------ctcttccacaggacaacccATAGC--ATTTTGGTTAAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29773920 111 - 170955103 gagc--------tgaaatctgccttcagag-tctcgcatccaactgt---------------------tctaccccacggggacctacagaac-agtccaaagc----------------ctcttccacaggacaacccATAGC--ATTTTGGTTAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820628 111 -   2996164 gagc--------tgaaatctgccttcagag-tctcgcatccaactgt---------------------tctaccccacggggacctacagaac-agcccaaagc----------------ctcttccacaggacaacccATAGC--ATTTTGGTTAAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570748 111 +    766320 gagc--------tgaaatctgccttcagag-tctcgcatccaactgt---------------------tctaccccacggggacctacagaac-agcccaaagc----------------ctcttccacaggacaacccATAGC--ATTTTGGTTAAAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027349 111 -  71996105 gagc--------tgaaatctgccttcagag-tctcgcatccaactgt---------------------tctaccccacggggacctacagaac-agcccaaagc----------------ctcttccacaggaaaacccATAGC--ATTTTGGTTAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     212894 111 +    290775 gagc--------tgaaatctgccttcagag-tctcgcatccaactgt---------------------tctaccccacggggacctacagaac-agcccaaagc----------------ctcttccacaggacaacccATAGC--ATTTTGGTTAAAAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2662855 127 -   3067355 gagc--------tgaaatctgccttcagag-tctcgcacccaactct---------------------tctaccccacagggacctacagaac-agcccaaagcctcttccacaggacagctcttcCACAGGACAACCCATAGC--ATTTTGGTTAAAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      39855 111 +    132061 gagc--------tgaaatctgccttcaggg-tcttgcacccaactgt---------------------tctgccccatggggacctacagaag-agcccaaagc----------------ctcttccacaggacaacccATAGC--ATTTTGATTAAAAT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     248974 111 -   1771730 gagc--------tgaaatctgccttcaggg-tttcgcacccaactgt---------------------tctgccccacggggacctacagaac-agcccaaagc----------------ctcttccacagggcaaccTATAGC--ATTTTGGTTAAAAT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           138861 111 +  18854210 gagc--------tgaaatctgcctttggga-tcttccacccagctgt---------------------tctaccccacgaggagctaaagaac-agcctaatgc----------------cccttccacaagatgacagATAGC--ATTTTGGTTAACAT
i otoGar3.GL873550         C 0 I 746
s mm10.chr17               57958812 143 -  94987271 AAGAAGACATAGTAAAATGTGCCTTCGGAGTTCTCATACTCAGCTGTCTGGGATGTTTCAGAGGCTCCCCGCCCCCACCCCCACCTCCCGTAC-AGCTAAATGC----------------TTCTTCCACAAAATAGCCCTTGCTTGGTTTTAGTTAAAAC
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            66769 108 +    102524 aggc--------tgaaatctgc--tgatgg-cctcgcacccagctgt---------------------cctggtccaggagga-ctacagaacaagcctaatgc----------------cccttccaca-gacagctcACAGC--ATTTTGGTCAAGAT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               153016 403 + 123392446 I
e proCoq1.NW_012152574v1     632340 453 +    730504 I
e canFam3.chr35            26251190 463 +  26524999 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I

a score=347471.000000
s hg38.chr6_GL000254v2_alt   915982 48 +   4827813 CAGCGCAAACCCATTCCCATTTGGTGA---------GGGGG-GAGGGGGAGGGGCAAG
s panTro5.chr6             29878891 48 + 175400573 CAGCGCAAACCCATTCCCATTTGGTGA---------GGGGG-GAGGGGGAGGGGCAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113536 48 + 173848474 CAGCGCAAACCCATTCCCATTTGGTGA---------GGGGG-GAGGGGGAGGGGCAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912152 48 +   6154872 CAGCGCAAACCCATTCCCATTTGGTGA---------CGGGG-GAGGGGGAGGGGCAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626383 42 + 122973662 CAGCGCAAACCCATTTCCTTTTGGT---------------G-GGGGGGGAGGGGTAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110306 58 + 172585720 CAGCGCAAACCCATTCCCATTTGGTGACGGAGTGAGGGGGGTGAGGGGGAGGGGCAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774031 58 - 170955103 CAGCGCAAACCCATTCCCATTTGGTGACGGAGTGAGGGGGGTGAGGGGGAGGGGCAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820739 58 -   2996164 CAGCGCAAACCCATTCCCATTTGGTGACGGAGTGAGGGGGGTGAGGGGGAGGGGCAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570859 57 +    766320 CAGCGCAAACCCATTCCCATTTGGTGACGGAGTGA-GGGGGTGAGGGGGAGGGGCAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027460 57 -  71996105 CAGCGCAAACCCATTCCCATTTGGTGACGGAGTGA-GGGGGTGAGGGGGAGGGGCAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213005 57 +    290775 CAGCGCAAACCCATTCCCATTTGGTGACGGAGTGA-GGGGGTGAGGGGGAGGGGCAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2662982 56 -   3067355 CAGCGCAAACCCATTCCCATTTGGTGACGGAGTGA-GGGGG-GAGGGGGAGGGGCAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      39966 48 +    132061 C-GCACAAACCCATTCCCATTTGGTGA---------GAGGATGAGGGGAAGGAGCAAG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     249085 49 -   1771730 CAGCACAAACCCATTCCCATTTGGTGA---------GAGGATGAGGGGAAGGAGCAAG
i cebCap1.NW_016107755v1   C 0 C 0
s mm10.chr17               57958955 35 -  94987271 CAGCAC-TTCTCCCTCCCATTTAG------------AAGGG----------AAGCAAG
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            66877 37 +    102524 CAGCACAAATCCATTGCCATT---------------------GCATTGGAGGGGCAAG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               153016 403 + 123392446 I
e proCoq1.NW_012152574v1     632340 453 +    730504 I
e canFam3.chr35            26251190 463 +  26524999 I
e otoGar3.GL873550           138972 746 +  18854210 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I

a score=24554.000000
s hg38.chr6_GL000254v2_alt   916030 4 +   4827813 CCTC
s panTro5.chr6             29878939 4 + 175400573 CCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113584 4 + 173848474 CCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912200 4 +   6154872 CCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626425 4 + 122973662 CCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110364 4 + 172585720 TCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774089 4 - 170955103 TCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820797 4 -   2996164 TCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570916 4 +    766320 TCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027517 4 -  71996105 TCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213062 4 +    290775 TCTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663038 4 -   3067355 CCTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      40014 4 +    132061 CCTC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     249134 4 -   1771730 CCTC
i cebCap1.NW_016107755v1   C 0 C 0
s mm10.chr17               57958990 2 -  94987271 CA--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26251653 4 +  26524999 CCTA
i canFam3.chr35            I 463 C 0
s dasNov3.JH582591            66914 4 +    102524 CCTA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               153016 403 + 123392446 I
e proCoq1.NW_012152574v1     632340 453 +    730504 I
e otoGar3.GL873550           138972 746 +  18854210 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I

a score=29006.000000
s hg38.chr6_GL000254v2_alt   916034 3 +   4827813 AGT
s panTro5.chr6             29878943 3 + 175400573 AGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113588 3 + 173848474 AGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912204 3 +   6154872 AGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626429 3 + 122973662 AGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110368 3 + 172585720 AGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774093 3 - 170955103 AGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820801 3 -   2996164 AGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570920 3 +    766320 AGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027521 3 -  71996105 AGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213066 3 +    290775 AGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663042 3 -   3067355 AGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      40018 3 +    132061 AGT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     249138 3 -   1771730 AGT
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012152574v1     632793 3 +    730504 AGT
i proCoq1.NW_012152574v1   I 453 C 0
s mm10.chr17               57958992 3 -  94987271 AAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26251657 3 +  26524999 AGT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            66918 3 +    102524 AGG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               153016 403 + 123392446 I
e otoGar3.GL873550           138972 746 +  18854210 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I

a score=137968.000000
s hg38.chr6_GL000254v2_alt   916037 12 +   4827813 GCCTGACTCACT
s panTro5.chr6             29878946 12 + 175400573 GCCTGACTCACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113591 12 + 173848474 GCCTGACTCACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912207 12 +   6154872 TCCTGACTCACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626432 12 + 122973662 GCCTGACTCACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110371 12 + 172585720 GCCTGACTCACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774096 12 - 170955103 GCCTGACTCACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820804 12 -   2996164 GCCTGACTCACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570923 12 +    766320 GCTTGACTCACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027524 12 -  71996105 GCCTAACTCACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213069 12 +    290775 GCCTGACTCACT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663045 12 -   3067355 CCCTGACTCACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      40021 12 +    132061 GCCTGACTCACT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     249141 12 -   1771730 GCCTGACTCACT
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012152574v1     632796 12 +    730504 GCCTCACTCACT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           139718 12 +  18854210 gccttatccact
i otoGar3.GL873550         I 746 I 3
s mm10.chr17               57958995 12 -  94987271 GCTCGACTTTCC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26251660 12 +  26524999 GCCTGATTCACC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            66921 10 +    102524 GCCTGACACC--
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               153016 403 + 123392446 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I

a score=256422.000000
s hg38.chr6_GL000254v2_alt   916049 22 +   4827813 TGACTCACAAGAAGCTGAATGT
s panTro5.chr6             29878958 22 + 175400573 TGACTCATAAGAAGCTGAATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113603 22 + 173848474 TGACTCATAAGAAGCTGAATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912219 22 +   6154872 TGACTCATAAGAAGCTGAATGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626444 22 + 122973662 TGACTCATAAGAAGCTGAATGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110383 22 + 172585720 TGACTCATAAGAAGCTGAATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774108 22 - 170955103 TGACTCATAAGAAGCTGAATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820816 22 -   2996164 TGACTCATAAGAAGCTGAATGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570935 22 +    766320 TGACTTATAAGAAGCTGAATGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027536 22 -  71996105 TGACTTATAAGAAGCTGAATGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213081 22 +    290775 TGACTTATAAGAAGCTGAATGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663057 22 -   3067355 GGACTCATAAGAAACTGAAGGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      40033 22 +    132061 TGACTCATAAGAAGCTGAATGt
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     249153 22 -   1771730 TGACTCATAAGAAGCTGAATGT
i cebCap1.NW_016107755v1   C 0 I 1018
s micMur3.chr6               153419 22 + 123392446 TGACTCACAAGAAGCTGAATGC
i micMur3.chr6             I 403 C 0
s proCoq1.NW_012152574v1     632808 22 +    730504 TGACTCATAAGAATCTGAATGC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           139733 22 +  18854210 ctactggcgccaagATGGATGC
i otoGar3.GL873550         I 3 C 0
s mm10.chr17               57959007 20 -  94987271 TGACTC--AGCAAGCTACATGA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26251672 22 +  26524999 CGATTTATAACAAGCTGAGTGC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            66931 13 +    102524 TAACTCA---------GGGTGC
i dasNov3.JH582591         C 0 C 0
e aotNan1.NW_018509740v1     332909 394 -    457564 I

a score=97366.000000
s hg38.chr6_GL000254v2_alt   916071 10 +   4827813 TTTTCCTTTT
s panTro5.chr6             29878980 10 + 175400573 TTTTCCTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113625 10 + 173848474 TTTTCCTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912241 10 +   6154872 TTTTCCTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626466 10 + 122973662 TTTTCCTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110405 10 + 172585720 TTTCCCTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774130 10 - 170955103 TTTCCCTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820838 10 -   2996164 TTTCCCTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570957 10 +    766320 TTTCCCTTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027558 10 -  71996105 TTTCCCTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213103 10 +    290775 TTTCCCTTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663079 10 -   3067355 TTTCCCTTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      40055 10 +    132061 ttttccttct
i calJac3.chrUn_GL286223   C 0 I 935
s micMur3.chr6               153441 10 + 123392446 TTGTCTTTTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     632830 10 +    730504 TCGTCTTTCT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           139755 10 +  18854210 TTATCttttt
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57959027  7 -  94987271 TTTTCTT---
i mm10.chr17               C 0 C 0
s canFam3.chr35            26251694 10 +  26524999 TTTTCTTTAA
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            66944 10 +    102524 TTTTATTTTT
i dasNov3.JH582591         C 0 C 0
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e cebCap1.NW_016107755v1     249175 1018 -   1771730 I

a score=12637.000000
s hg38.chr6_GL000254v2_alt   916081 1 +   4827813 G
s panTro5.chr6             29878990 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113635 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912251 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626476 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110415 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774140 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820848 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570967 1 +    766320 G
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027568 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213113 1 +    290775 G
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663089 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      41000 1 +    132061 g
i calJac3.chrUn_GL286223   I 935 C 0
s micMur3.chr6               153451 1 + 123392446 G
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     632840 1 +    730504 G
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           139765 1 +  18854210 a
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57959034 1 -  94987271 A
i mm10.chr17               C 0 C 0
s canFam3.chr35            26251705 1 +  26524999 G
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            66954 1 +    102524 g
i dasNov3.JH582591         C 0 I 2432
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e cebCap1.NW_016107755v1     249175 1018 -   1771730 I

a score=25772.000000
s hg38.chr6_GL000254v2_alt   916082 2 +   4827813 AA
s panTro5.chr6             29878991 2 + 175400573 AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113636 2 + 173848474 AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912252 2 +   6154872 AA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626477 2 + 122973662 AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110416 2 + 172585720 AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774141 2 - 170955103 AA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820849 2 -   2996164 AA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570968 2 +    766320 AA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027569 2 -  71996105 AA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213114 2 +    290775 AA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663090 2 -   3067355 AA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      41001 2 +    132061 ag
i calJac3.chrUn_GL286223   C 0 C 0
s micMur3.chr6               153452 2 + 123392446 AA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     632841 2 +    730504 AA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           139766 2 +  18854210 aa
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57959035 2 -  94987271 AA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26251706 2 +  26524999 AA
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            66955 2432 +    102524 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e cebCap1.NW_016107755v1     249175 1018 -   1771730 I

a score=100206.000000
s hg38.chr6_GL000254v2_alt   916084 8 +   4827813 AGAT-AAAA
s panTro5.chr6             29878993 8 + 175400573 AGAT-AAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113638 8 + 173848474 AGAT-AAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912254 8 +   6154872 AGAT-AAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626479 8 + 122973662 AGAT-AAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110418 8 + 172585720 AGAT-AAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774143 8 - 170955103 AGAT-AAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820851 8 -   2996164 AGAT-AAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570970 8 +    766320 AGAT-AAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027571 8 -  71996105 AGAT-AAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213116 8 +    290775 AGAT-AAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663092 8 -   3067355 AGGT-AAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      41003 9 +    132061 agataaaaa
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     250193 8 -   1771730 agat-aaaa
i cebCap1.NW_016107755v1   I 1018 C 0
s micMur3.chr6               153454 8 + 123392446 AAAT-AAAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     632843 8 +    730504 AAAT-AAAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           139768 8 +  18854210 aaat-aaaa
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57959037 8 -  94987271 AAAC-AAAA
i mm10.chr17               C 0 I 2464
s canFam3.chr35            26251708 8 +  26524999 AGAG-GAAA
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            66955 2432 +    102524 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I

a score=387407.000000
s hg38.chr6_GL000254v2_alt   916092 35 +   4827813 ATATTGGTGAATCTCAGACTAACAATAGGGAATAC
s panTro5.chr6             29879001 35 + 175400573 ATATTGGTGAATCTCAGACTAACAATAGGGAATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113646 35 + 173848474 ATATTGGTGAATCTCAGACTAACAATAGGGAATAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912262 35 +   6154872 ATATTGGTGAATCTCAGACTAACAATAGGGAATAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626487 35 + 122973662 ATATTGGTGAATCTCAGACTAACAATAGGGAATAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110426 35 + 172585720 ATATTGGTGAATCTCAGATTAATAATAGGGAATAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774151 35 - 170955103 ATATTGGTGAATCTCAGATTAATAATAGGGAATAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820859 35 -   2996164 ATATTGGTGAATCTCAGATTAATAATAGGGAATAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     570978 35 +    766320 ATATTGGTGAATCTCAGATTAATAATAGGGAATAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027579 35 -  71996105 ATATTGGTGAATCTCAGATTAATAATAGGGAATAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213124 35 +    290775 ATATTGGTGAATCTCAGATTAATAATAGGGAATAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663100 35 -   3067355 ATATTGATGAATCTCAGATTAATAATAGGGAATAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      41012 35 +    132061 ATATTGGAGAATCTCAGAATAATAATAAGAAATAC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     250201 35 -   1771730 ATATTGGAGAATATCAGAATAATAATAGGGAATAC
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               153462 35 + 123392446 ATATTGCTGAATTTCAAAATAATAGTAGCGAGAAC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     632851 35 +    730504 ATATTGGTGAATTTCAAAATAATAGTAGCGAGAAC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           139776 35 +  18854210 atattGGTGAATTTTGAAATAATAATAAGGAAGAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26251716 35 +  26524999 CTATGGGTGAATTTCAGAATAGCGACAAGGAAGAA
i canFam3.chr35            C 0 C 0
e mm10.chr17               57959045 2464 -  94987271 I
e dasNov3.JH582591            66955 2432 +    102524 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I

a score=898603.000000
s hg38.chr6_GL000254v2_alt   916127 85 +   4827813 ACAAAAATG-G-AAAAAATGTTGATAGATAAAATTTAAACCTTTGGTAGAACATAATTAGTTTTTTGTTCTCTACATTTTTCCA-TAT
s panTro5.chr6             29879036 85 + 175400573 ACAAAAATG-G-AAAAAATGTTGATAGATAAAATTTAAACCTTTGGTAGAACATAATTAGTTTTTTGTTCTCTACATTTTTCCA-TAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113681 81 + 173848474 ACAAAAATG-G-AAAAAATGTTGATAGATAAAATTTAAACCTTTGGTAGAACA----TAGTTTTTTGTTCTCTACATTTTTCCA-TAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912297 81 +   6154872 ACAAAAATG-G-AAAAAATGTTGATAGATAAAATTTAAACCTTTGGTAGAACA----TAGTTTTTTGTTCTCTACATTTTTCCA-TAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626522 85 + 122973662 ACAAAAATG-G-AAAAAATGTTGATAGATAAAATTTAAACCTTTGGTAGAACGTAATTAGTTTTTTGTTCTCTACATTTTTCCA-TAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110461 85 + 172585720 ACAAAAATG-G-AAAAAATGTTGATAGATAAAATTTAAACCTTTGGCCCAACATCATTAGTCTTTTGTTGTCTACATTTTTCCA-TAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774186 85 - 170955103 ACAAAAATG-G-AAAAAATGTTGATAGATAAAATTTAAACCTTTGGCCCAACATCATTAGTCTTTTGTTGTCTACATTTTTCCA-TAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820894 85 -   2996164 ACAAAAATG-G-AAAAAATGTTGATAGATAAAATTTAAACCTTTGGCCCAACATCATTAGTCTTTTGTTGTCTACATTTTTCCA-TAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571013 85 +    766320 ACAAAAATG-G-AAAAAATGTTGATAGATAAAATTTAAACCTTTGGCCCAACATCATCAGTCTTTTGTTGTCTACATTTTTCCA-TAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027614 85 -  71996105 ACAAAAATG-G-AAAAAATGTTGATAGATAAAATTTAAACCTTTGGCCCAACATCATTAGTCTTTTGTTGTCTACATTTTTCCA-TAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213159 85 +    290775 ACAAAAATG-G-AAAAAATGTTGATAGATAAAATTTAAACCTTTGGCCCAACATCATCAGTCTTTTGTTGTCTACATTTTTCCA-TAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663135 85 -   3067355 ACAAAAATG-G-AAAAAATGTTGATAGATAAAATTTAAACCTTTGGCCCAACATTATTAGTCTTTTGTTGTCTACATTTTTCCG-TAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      41047 80 +    132061 TCAAAAATG-GAAAAAAATATTGAC--ATAAAGTTTAAACCTTTGGCAAATCATCATTAGGTTTTTGTTCTACACATTTTTT-----T
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     250236 85 -   1771730 GCAAAAATG-G-AAAAAATGTTGATAGATAAAATTTAAACCTTTGGCAAAACATCACTAGTTTTTTGTTCTATACATTTTTTCA-TAT
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               153497 85 + 123392446 TCGAAAATG-G-AAAAAATGTTGATAGATAAAATCTAAAGCTTTGGCAGACCGTCATTAGTTTTTTGTTCTCTACATTTTTCTA-TAT
i micMur3.chr6             C 0 I 3
s proCoq1.NW_012152574v1     632886 84 +    730504 TCGAAAATG-G--AAAAATGTTGATAGATAAAATTTAAAGCTTTGGCAGACCGTCATTAGTTTTTTGTTCTCTACATTTTTCTA-TAT
i proCoq1.NW_012152574v1   C 0 I 3831
s otoGar3.GL873550           139811 78 +  18854210 ACAAAAATG-G--AAAAGTT------GATAAAATTTAAACCATTGACAGACTATTATTACTTTCTTGTTCTCTACATTTTTCTA-TAc
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26251751 69 +  26524999 ACAAAACTGAG-GGGAAATGTTGATGGATAAAATGTAAA-CTTTGGTAGAACA-----------TTGTTGTCCACATTCTCC------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            69387 85 +    102524 ACACAAATG-A-AAAATATGTTGATGAATAAAATGTAAAACCTTGGGGAAACATCATTGGGTTTTC-CTCCCTATATTTTTCTGTTAT
i dasNov3.JH582591         I 2432 C 0
e mm10.chr17               57959045 2464 -  94987271 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I

a score=5705.000000
s hg38.chr6_GL000254v2_alt   916212 2 +   4827813 -CG
s panTro5.chr6             29879121 2 + 175400573 -CG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113762 2 + 173848474 -CG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912378 2 +   6154872 -CG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626607 2 + 122973662 -CG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110546 2 + 172585720 -CG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774271 2 - 170955103 -CG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820979 2 -   2996164 -CG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571098 2 +    766320 -CG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027699 2 -  71996105 -CG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213244 2 +    290775 -CG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663220 2 -   3067355 -CG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      41127 2 +    132061 -CA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     250321 2 -   1771730 -CC
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           139889 2 +  18854210 -ag
i otoGar3.GL873550         C 0 I 184
s dasNov3.JH582591            69472 2 +    102524 TT-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               153582 3 + 123392446 I
e mm10.chr17               57959045 2464 -  94987271 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26251820 0 +  26524999 C
e aotNan1.NW_018509740v1     332909 394 -    457564 I

a score=329172.000000
s hg38.chr6_GL000254v2_alt   916214 32 +   4827813 TTTCTAATTTTTCTACACTGTATGTGTTACTT
s panTro5.chr6             29879123 32 + 175400573 TTTCTAATTTTTCTACACTGTATGTGTTACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113764 32 + 173848474 TTTCTAATTTTTCTACACTGTATGTGTTACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912380 32 +   6154872 TTTCTAATTTTTCTACACTGTATGTGTTACTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626609 32 + 122973662 TTTCTAATTTTTCTACACTGTACGTGTTACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110548 32 + 172585720 TTTCCAATTTTTCTACACTGTATGTGTTACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774273 32 - 170955103 TTTCCAATTTTTCTACACTGTATGTGTTACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2820981 32 -   2996164 TTTCCAATTTTTCTACACTGTATGTGTTACTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571100 32 +    766320 TTTCCAATTTTTCTACACTGTATGTGTTACTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027701 32 -  71996105 TTTCCAATTTTTCTACACTGTATGTGTTACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213246 32 +    290775 TTTCCAATTTTTCTACACTGTATGTGTTACTT
i manLeu1.NW_012099233v1   C 0 I 18
s colAng1.NW_012115566v1    2663222 32 -   3067355 TTTCTAATTTTTCTACACTGTATGTGTTACTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      41129 31 +    132061 TATCTAATTTTG-TACATTGTATGTGTTACTT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     250323 27 -   1771730 TTTCTAATTTTG-TACAC----TGTGTTATTT
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               153585 31 + 123392446 TTTCTAATTTT-CCACACTGTATGTGTTACTT
i micMur3.chr6             I 3 C 0
s otoGar3.GL873550           140075 31 +  18854210 TTTCTAATTTT-CCACATTGTATGTGTTACTT
i otoGar3.GL873550         I 184 C 0
s canFam3.chr35            26251820 28 +  26524999 --TCTATGCTTCCTCCACTG--TGTGTCACTT
i canFam3.chr35            C 0 I 2
s dasNov3.JH582591            69474 31 +    102524 CTTCTAATTTT-CCACACTGTGTGTGCTACTA
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57959045 2464 -  94987271 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I

a score=2300.000000
s hg38.chr6_GL000254v2_alt   916246 1 +   4827813 A
s panTro5.chr6             29879155 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113796 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912412 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626641 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2663254 1 -   3067355 A
i colAng1.NW_012115566v1   C 0 C 0
s micMur3.chr6               153616 1 + 123392446 A
i micMur3.chr6             C 0 I 11
s otoGar3.GL873550           140106 1 +  18854210 A
i otoGar3.GL873550         C 0 I 74
s dasNov3.JH582591            69505 1 +    102524 G
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57959045 2464 -  94987271 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26251848 2 +  26524999 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e cebCap1.NW_016107755v1     250350 0 -   1771730 C
e calJac3.chrUn_GL286223      41160 0 +    132061 C
e manLeu1.NW_012099233v1     213278 18 +    290775 I
e chlSab2.chr17            29027733 0 -  71996105 C
e cerAty1.NW_012002711v1     571132 0 +    766320 C
e macNem1.NW_012011356v1    2821013 0 -   2996164 C
e macFas5.chr4             29774305 0 - 170955103 C
e rheMac8.chr4             30110580 0 + 172585720 C

a score=-2563.000000
s hg38.chr6_GL000254v2_alt   916247 1 +   4827813 -A
s panTro5.chr6             29879156 1 + 175400573 -A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113797 1 + 173848474 -A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912413 1 +   6154872 -A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626642 1 + 122973662 -G
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2663255 1 -   3067355 -G
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      41160 1 +    132061 -A
i calJac3.chrUn_GL286223   C 0 I 1
s cebCap1.NW_016107755v1     250350 1 -   1771730 -A
i cebCap1.NW_016107755v1   C 0 I 1
s otoGar3.GL873550           140181 1 +  18854210 -A
i otoGar3.GL873550         I 74 C 0
s dasNov3.JH582591            69506 1 +    102524 T-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               153617 11 + 123392446 I
e mm10.chr17               57959045 2464 -  94987271 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26251848 2 +  26524999 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e manLeu1.NW_012099233v1     213278 18 +    290775 I
e chlSab2.chr17            29027733 0 -  71996105 C
e cerAty1.NW_012002711v1     571132 0 +    766320 C
e macNem1.NW_012011356v1    2821013 0 -   2996164 C
e macFas5.chr4             29774305 0 - 170955103 C
e rheMac8.chr4             30110580 0 + 172585720 C

a score=34908.000000
s hg38.chr6_GL000254v2_alt   916248 14 +   4827813 AGAAATAAACCAGT
s panTro5.chr6             29879157 14 + 175400573 AGAAATAAACCAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113798 14 + 173848474 AGAAATAAACCAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912414 14 +   6154872 AGAAATAAACCAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626643 14 + 122973662 GGAAATAAACCAGT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chrUn_GL286223      41162 14 +    132061 AGAAATAAAACAGT
i calJac3.chrUn_GL286223   I 1 C 0
s cebCap1.NW_016107755v1     250352 14 -   1771730 AGAAATAAACCAGT
i cebCap1.NW_016107755v1   I 1 C 0
s otoGar3.GL873550           140182 14 +  18854210 AAAAAAAAATGTGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26251850 14 +  26524999 GTAAGCACCCCAGT
i canFam3.chr35            I 2 I 5
s dasNov3.JH582591            69507 14 +    102524 GTAAATGCACCAGT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               153617 11 + 123392446 I
e mm10.chr17               57959045 2464 -  94987271 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e colAng1.NW_012115566v1    2663256  0 -   3067355 C
e manLeu1.NW_012099233v1     213278 18 +    290775 I
e chlSab2.chr17            29027733  0 -  71996105 C
e cerAty1.NW_012002711v1     571132  0 +    766320 C
e macNem1.NW_012011356v1    2821013  0 -   2996164 C
e macFas5.chr4             29774305  0 - 170955103 C
e rheMac8.chr4             30110580  0 + 172585720 C

a score=3276.000000
s hg38.chr6_GL000254v2_alt   916262 1 +   4827813 A
s panTro5.chr6             29879171 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113812 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912428 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626657 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s calJac3.chrUn_GL286223      41176 1 +    132061 A
i calJac3.chrUn_GL286223   C 0 I 2
s cebCap1.NW_016107755v1     250366 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 I 2
s otoGar3.GL873550           140196 1 +  18854210 A
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            69521 1 +    102524 A
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               153617 11 + 123392446 I
e mm10.chr17               57959045 2464 -  94987271 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26251864 5 +  26524999 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e colAng1.NW_012115566v1    2663256 0 -   3067355 C
e manLeu1.NW_012099233v1     213278 18 +    290775 I
e chlSab2.chr17            29027733 0 -  71996105 C
e cerAty1.NW_012002711v1     571132 0 +    766320 C
e macNem1.NW_012011356v1    2821013 0 -   2996164 C
e macFas5.chr4             29774305 0 - 170955103 C
e rheMac8.chr4             30110580 0 + 172585720 C

a score=22949.000000
s hg38.chr6_GL000254v2_alt   916263 8 +   4827813 ggccaggc
s panTro5.chr6             29879172 8 + 175400573 ggccaggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113813 8 + 173848474 ggccaggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912429 8 +   6154872 ggccaggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626658 8 + 122973662 ggccgggc
i nomLeu3.chr1a            C 0 C 0
s manLeu1.NW_012099233v1     213296 8 +    290775 ggccgagc
i manLeu1.NW_012099233v1   I 18 C 0
s calJac3.chrUn_GL286223      41179 8 +    132061 ggctgggt
i calJac3.chrUn_GL286223   I 2 C 0
s cebCap1.NW_016107755v1     250369 8 -   1771730 ggctgggt
i cebCap1.NW_016107755v1   I 2 C 0
s otoGar3.GL873550           140197 8 +  18854210 ggccagcc
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            69522 8 +    102524 AACCAGGC
i dasNov3.JH582591         C 0 I 29
e micMur3.chr6               153617 11 + 123392446 I
e mm10.chr17               57959045 2464 -  94987271 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26251864 5 +  26524999 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e colAng1.NW_012115566v1    2663256 0 -   3067355 C
e chlSab2.chr17            29027733 0 -  71996105 C
e cerAty1.NW_012002711v1     571132 0 +    766320 C
e macNem1.NW_012011356v1    2821013 0 -   2996164 C
e macFas5.chr4             29774305 0 - 170955103 C
e rheMac8.chr4             30110580 0 + 172585720 C

a score=134823.000000
s hg38.chr6_GL000254v2_alt   916271 49 +   4827813 gcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggc
s panTro5.chr6             29879180 49 + 175400573 gcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113821 49 + 173848474 gcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912437 49 +   6154872 gcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626666 49 + 122973662 gcagtggctcacgcttgtaatcccggcactttgggaggccgaggcgggt
i nomLeu3.chr1a            C 0 C 0
s manLeu1.NW_012099233v1     213304 49 +    290775 gcagtggctcacgcctgcaatcccagcattttctgaggacgacgcaggt
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      41187 49 +    132061 gtgatggctcactcctgtaatcctagcactttgggaggccaaggtgggc
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     250377 49 -   1771730 gtgatggctcactcctgtaatcctagcactttgggaggtctaggtgggc
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           140205 49 +  18854210 acagtggctcacacctgtaatcctagcactctgggaggccaagacaggt
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               153617 11 + 123392446 I
e mm10.chr17               57959045 2464 -  94987271 I
e dasNov3.JH582591            69530 29 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26251864  5 +  26524999 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e colAng1.NW_012115566v1    2663256  0 -   3067355 C
e chlSab2.chr17            29027733  0 -  71996105 C
e cerAty1.NW_012002711v1     571132  0 +    766320 C
e macNem1.NW_012011356v1    2821013  0 -   2996164 C
e macFas5.chr4             29774305  0 - 170955103 C
e rheMac8.chr4             30110580  0 + 172585720 C

a score=376328.000000
s hg38.chr6_GL000254v2_alt   916320 221 +   4827813 ggatcac--gaggtcaggagatcgagaccatcctggctaatacggtgaaaccccgtctctactaaaaaaatacaaaaaattagccaggcatggtgacgcacccctgtaatcccagctactcaggaggctgaggcagg-agaatggcgtgaaccc----------------gggaggcggagcttgcagtgagccgagat----cgtgtcactgcactccagactgggcgaca-gagcaagactc-t
s panTro5.chr6             29879229 221 + 175400573 ggatcac--gaggtcaggagatcgagaccatcctggctaatacggtgaaaccccgtctctactaaaaaaatacaaaaaattagccaggcatggtgacgcacccctgtaatcccagctactcaggaggctgaggcagg-agaatggcgtgaaccc----------------gggaggcggagcttgcagtgagccgagat----cgtgtcactgcactccagcctgggcgaca-gagcaagactc-t
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912486 222 +   6154872 ggatcac--gaggtcaggagatcgagaccatcctggctaatacggtgaaaccccgtctctactaaaaaaatacaaaaaattagccaggcatggtgacgcacccctgtaatcccagctactcaggaggctgaggcagg-agaatggcgtgaaccc----------------gggaggcgaagcttgcagtgagccgagat----cgtgtcactgcactccagcctgggcgaca-gagcaagactctt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626715 221 + 122973662 ggatcac--gaggtcaggaaatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaaaatacaaaaaattagctgggcatggtggcgggcaactgtagtcccagctactcaggaggctgaggcagg-agaatggcgtgaacct----------------gggaggcggagcttgcaatgagccgagat----cgtgccactgcactccagcctgggcaaca-gagcaagactc-t
i nomLeu3.chr1a            C 0 C 0
s manLeu1.NW_012099233v1     213353 220 +    290775 ggatcac--gacgtcaggagatcgagaccatcctgaccaatatggtgaaaccctatctctact---aaaatacaaaaaaccagctaggcatggtggccggtgcctgtagtcccagctactaaggagagtgaggcaggaagaatcccttgaaccc----------------gggaggcggaggttgcagtgagccaagat----cgtgccattgcactccagcctgggcaacatgagcgaaactc-a
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      41236 233 +    132061 agatgac--aaggtcaggagttcaaaaccagcctgaccaacgtggtgaatccccatctctact--aaaaatac-aaaaattagctggacgtggtggcatatgcctgtaatcctagctactcaggaggctgaggcag--agaactgcttgaaccagggaggtggggaggtggggaggtggagattgcagtgagccgagat----cgtgccactgcactccagcctgggcaaca-gagtgagattc-c
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     250426 225 -   1771730 ggatcac--aaggtcaggagtttgaaaccagcctgaccaacatggtgaaaacccatctctacc--aaaaatac-aaaaattagctgggtgtagtgacacgtgcctgtaatcctagctactcaggaggctgaggcaa--agaattgcttgaaccc--------aggaggtggggaggtggaggttgcagtgagccgagat----catgccactgcactccagcctgggcaaca-gagtgagattc-c
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           140254 217 +  18854210 gggttgcttgaactcaggagttagaaaccagcctgagcagga--gcaagaccctttccctact--aaaaatag-aaaaattagccaggcat-gtagcagtcacctatagtcccagctactctggaagctgaggcagg-aagatcacttgagccc----------------aagagtttgagattgctgtgagctataatgacacctggcactcaacccca----gggagaca-gagTAAAAATC-T
i otoGar3.GL873550         C 0 I 535
e micMur3.chr6               153617  11 + 123392446 I
e mm10.chr17               57959045 2464 -  94987271 I
e dasNov3.JH582591            69530  29 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26251864   5 +  26524999 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e colAng1.NW_012115566v1    2663256   0 -   3067355 C
e chlSab2.chr17            29027733   0 -  71996105 C
e cerAty1.NW_012002711v1     571132   0 +    766320 C
e macNem1.NW_012011356v1    2821013   0 -   2996164 C
e macFas5.chr4             29774305   0 - 170955103 C
e rheMac8.chr4             30110580   0 + 172585720 C
e panPan2.chr6             30113870   0 + 173848474 C

a score=30333.000000
s hg38.chr6_GL000254v2_alt   916541 19 +   4827813 gtctcaaaaaaaaaaaaaa
s panTro5.chr6             29879450 19 + 175400573 atctcaaaaaaaaaaaaaa
i panTro5.chr6             C 0 I 1
s gorGor5.CYUI01015250v1    5912708 19 +   6154872 gtctcaaaaaaaagaaaga
i gorGor5.CYUI01015250v1   C 0 I 1
s nomLeu3.chr1a            74626936 19 + 122973662 gtctcaaaaaaaaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s manLeu1.NW_012099233v1     213573 19 +    290775 gtctcataaaaagaaaaga
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      41469 19 +    132061 gtttcaaaaaaaaaaaaaa
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     250651 19 -   1771730 gtttcaaaaaaagaaaaaa
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               153617 11 + 123392446 I
e mm10.chr17               57959045 2464 -  94987271 I
e dasNov3.JH582591            69530 29 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26251864  5 +  26524999 I
e otoGar3.GL873550           140471 535 +  18854210 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e colAng1.NW_012115566v1    2663256  0 -   3067355 C
e chlSab2.chr17            29027733  0 -  71996105 C
e cerAty1.NW_012002711v1     571132  0 +    766320 C
e macNem1.NW_012011356v1    2821013  0 -   2996164 C
e macFas5.chr4             29774305  0 - 170955103 C
e rheMac8.chr4             30110580  0 + 172585720 C
e panPan2.chr6             30113870  0 + 173848474 C

a score=2501.000000
s hg38.chr6_GL000254v2_alt   916560 6 +   4827813 aaagaa
s panTro5.chr6             29879470 6 + 175400573 aaaaga
i panTro5.chr6             I 1 C 0
s gorGor5.CYUI01015250v1    5912728 6 +   6154872 agaaag
i gorGor5.CYUI01015250v1   I 1 C 0
s nomLeu3.chr1a            74626955 2 + 122973662 ----aa
i nomLeu3.chr1a            C 0 C 0
s manLeu1.NW_012099233v1     213592 6 +    290775 aaagaa
i manLeu1.NW_012099233v1   C 0 T 320
s calJac3.chrUn_GL286223      41488 6 +    132061 aatgaa
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               153617 11 + 123392446 I
e mm10.chr17               57959045 2464 -  94987271 I
e dasNov3.JH582591            69530 29 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26251864 5 +  26524999 I
e otoGar3.GL873550           140471 535 +  18854210 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e cebCap1.NW_016107755v1     250670 0 -   1771730 C
e colAng1.NW_012115566v1    2663256 0 -   3067355 C
e chlSab2.chr17            29027733 0 -  71996105 C
e cerAty1.NW_012002711v1     571132 0 +    766320 C
e macNem1.NW_012011356v1    2821013 0 -   2996164 C
e macFas5.chr4             29774305 0 - 170955103 C
e rheMac8.chr4             30110580 0 + 172585720 C
e panPan2.chr6             30113870 0 + 173848474 C

a score=10010.000000
s hg38.chr6_GL000254v2_alt   916566 2 +   4827813 aa
s panTro5.chr6             29879476 2 + 175400573 aa
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912734 2 +   6154872 aa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626957 2 + 122973662 aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110580 2 + 172585720 AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774305 2 - 170955103 AA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821013 2 -   2996164 AA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571132 2 +    766320 AA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027733 2 -  71996105 AA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213278 2 +    290775 AA
i manLeu1.NW_012099233v1   T 320 C 0
s calJac3.chrUn_GL286223      41494 2 +    132061 aa
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               153617 11 + 123392446 I
e mm10.chr17               57959045 2464 -  94987271 I
e dasNov3.JH582591            69530 29 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26251864 5 +  26524999 I
e otoGar3.GL873550           140471 535 +  18854210 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e cebCap1.NW_016107755v1     250670 0 -   1771730 C
e colAng1.NW_012115566v1    2663256 0 -   3067355 C
e panPan2.chr6             30113870 0 + 173848474 C

a score=53461.000000
s hg38.chr6_GL000254v2_alt   916568 10 +   4827813 agaaataaAC
s panTro5.chr6             29879478 10 + 175400573 ataaaTAAAC
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912736 10 +   6154872 agaaagaaaC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626959 10 + 122973662 agaaagaaaC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110582 10 + 172585720 AGAAATAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774307 10 - 170955103 AGAAATAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821015 10 -   2996164 AGAAATAAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571134 10 +    766320 AGAAATAAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027735 10 -  71996105 AGAAATAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213280 10 +    290775 AGAAATAAAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663256 10 -   3067355 AGAAATAAGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      41496 10 +    132061 agaaaTAAAC
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               153617 11 + 123392446 I
e mm10.chr17               57959045 2464 -  94987271 I
e dasNov3.JH582591            69530 29 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26251864  5 +  26524999 I
e otoGar3.GL873550           140471 535 +  18854210 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e cebCap1.NW_016107755v1     250670  0 -   1771730 C
e panPan2.chr6             30113870  0 + 173848474 C

a score=276315.000000
s hg38.chr6_GL000254v2_alt   916578 63 +   4827813 CAGTATggccgggcgcggtggctcatgcctgcaatcccagcactttgggaggacgaggcgggt
s panTro5.chr6             29879488 63 + 175400573 CAGTATggccgggcgcggtggctcacgcctgcaatcccagcactttgggaggacgaggcgggt
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912746 63 +   6154872 CCGTATggccgggcgcagtggctcacgcctgcaatcccagcactttgggaggacgaggcgggt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74626969 59 + 122973662 CA----ggccgggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggcgggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110592 63 + 172585720 CAGTATggccgagcacggtggctcacgcctgcaatcccagcattttgtgaggacgacgcaggt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774317 63 - 170955103 CAGTATggccgagcacggtggctcacgcctgcaatcccagcattttgtgaggacgacgcaggt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821025 63 -   2996164 CAGTATggccaagcacggtggctcacgcctgcaatcccagcattttgtgaggacgacgcaggt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571144 63 +    766320 CAGTATggccgagcgcagtggctcacgcctgcaatcccagcattttctgaggacgacgcaggt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027745 63 -  71996105 CAGTATggccgagcgcggtggctcatgcctgcaatcccagcattttctgaggacgacgcaggt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213290 63 +    290775 CAGTATggccgagcgcagtggctcacgcctgcaatcccagcattttctgaggacgacgcaggt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663266 63 -   3067355 CAGTATggttgggcgcggtggctcacgcctgcaatcccagcactttgtgaggacgaagcaggt
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               153617 11 + 123392446 I
e mm10.chr17               57959045 2464 -  94987271 I
e dasNov3.JH582591            69530 29 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26251864  5 +  26524999 I
e otoGar3.GL873550           140471 535 +  18854210 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e cebCap1.NW_016107755v1     250670  0 -   1771730 C
e calJac3.chrUn_GL286223      41506  0 +    132061 C
e panPan2.chr6             30113870  0 + 173848474 C

a score=425778.000000
s hg38.chr6_GL000254v2_alt   916641 77 +   4827813 ggatcacgaggtcaggaaatcgagcccatcctgaccaatatggtgaaacctcgtctctactaaaatacaaaaaatta
s panTro5.chr6             29879551 77 + 175400573 ggatcacgaggtcaggaaatcgagcccatcctgaccaatatggtgaaaccccgtctctactaaaatacaaaaaatta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113870 76 + 173848474 ggatcacgaggtcaggaaatcgagcccatcctgaccaatatggtgaaaccccgtctctactaaaatac-aaaaatta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912809 77 +   6154872 ggatcacgaggtcaggaaatcgagcccatcctgaccaatatggtgaaaccccgtctctactaaaatacaaaaaatta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74627028 77 + 122973662 ggatcatgaggtcaggagatcgagcccatcctgaccaatatggtgaaacctcgtctctactaaaatacaaaaaatta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110655 77 + 172585720 ggatcacgacatcaggagatcgagaccatcctgaccaatatggtgaaacactatctctactaaaatacaaaaaatta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774380 77 - 170955103 ggatcacgacatcaggagatcgagaccatcctgaccaatatggtgaaacactatctctactaaaatacaaaaaatta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821088 77 -   2996164 ggatcacgacatcaggagatcgagaccatcctgaccaatatggtgaaaccctatctctactaaaatacaaaaaatta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571207 77 +    766320 ggatcacgacgtcaggagatcgagaccatcctgaccaatatggtgaaaccctatctctactaaaatacaaaaaacca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027808 77 -  71996105 ggatcacgacgtcaggagatcgagaccatcctgaccaatatggtgaaaccctatctctactaaaatgcaaaaaacca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213353 77 +    290775 ggatcacgacgtcaggagatcgagaccatcctgaccaatatggtgaaaccctatctctactaaaatacaaaaaacca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663329 77 -   3067355 ggatcacgacgtcaggagatcgagaccatcctgaccaatgtggtgaaaccccatctctactaaaatacaaaaaacta
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               153617 11 + 123392446 I
e mm10.chr17               57959045 2464 -  94987271 I
e dasNov3.JH582591            69530 29 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26251864  5 +  26524999 I
e otoGar3.GL873550           140471 535 +  18854210 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e cebCap1.NW_016107755v1     250670  0 -   1771730 C
e calJac3.chrUn_GL286223      41506  0 +    132061 C

a score=894045.000000
s hg38.chr6_GL000254v2_alt   916718 173 +   4827813 gccgggcgtggtggcgggtgcctgtagtcccagctacaaaggagggtgaggcagg-agaatcccttgaacccgggaggtggaggttgcagtgagcca-agatcgtgccattgcactccagcctgggcaacaagagcgaaactccgt-ctc-----------------------------------------------------aaaaaaaaaaaagaaagaaaagaaaa
s panTro5.chr6             29879628 175 + 175400573 gccgggcgtggtgtcgggtgcctgtagtcccagctacaaaggtgggtgaggcagg-agaatcccttgaacccgggaggtggaggttgcagtaagcca-agatcgtgccattgcactccagcctgggcaacaagagcgaaactccgt-ctc---------------------------------------------------aaaaaaaaaaaaaagaaagaaaagaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30113946 172 + 173848474 gccaggcgtggtgtcgggtgcctgtagtcccagctacaaaggtgggtgaggcagg-agaatcccttgaacccgggaggtggaggttgcagtaagcca-agatcgtgccattgcactccagcctgggcaacaagagcgaaactccgt-ctc------------------------------------------------------aaaaaaaaaaagaaagaaaagaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5912886 176 +   6154872 gccgggcgtggtggcgggtgcctgtagtcccagctacaaaggagggtgaggcagg-agaatcccttgaacccaggaggtggaggttgcggtgagcca-agatcgtgccattgcactccagcctgggcaacaagagcgaaactccgt-ctc--------------------------------------------------aaaaaaaaaaagaaagaaagaaaagaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74627105 224 + 122973662 gccgggcgtgatggcgggtgcctgtagtcccagctactaaggagggtgaggcagg-acaatcccttgaacctaggaggcggaggttgcagtgagcca-agatcgtgccattgcactccagcctggacaacaagagcgaaactccgt-caaaaaaaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag--aaagaaagaaagaaagaaagaaaagaaaA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110732 185 + 172585720 gctaggcatggtggccggtgcctgtagtcccagctactaaggagagtgaggcagg-agaatcccttgaacccgggaggcggaggttgcagtgagcca-agatggtgccattgcactccagcctgggcaacatgagcgaaactcagt-ctc---------------------------------------ataaaaaga--aaagaaaagaaaaagaaaaaaaaagagaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774457 185 - 170955103 gctaggcatggtggccggtgcctgtagtcccagctactaaggagagtgaggcagg-agaatcccttgaacccgggaggcggaggttgcagtgagcca-agatggtgccattgcactccagcctgggcaacatgagcgaaactcagt-ctc---------------------------------------aTAaaaaga--aaagaaaagaaaaagaaaaaaaaagagaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821165 184 -   2996164 gctaggcatggtggccggtgcctgtagtcccagctactaaggagagtgaggcagg-agaatcccttgaacccgggaggcggaggttgcagtgagccg-agattgtgccattgcactccagcctgggcaacatgagcgaaactcagt-ctc---------------------------------------aTAaaaaga--aaagaaaagaaaaag-aaaaaaaagagaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571284 184 +    766320 gctaggcatggtggccggtgcctgtagtcccagctactaaggagagtgaggcaggaagaatcccttgaacccgggaggcggaggttgcagtgagcca-agatcgtgccattgcactccagcctgggcaacatgagcgaaactcagt-ctc---------------------------------------ataaaaaga--aaagaaaagaaaaag--aaaaaaaaagaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29027885 185 -  71996105 gctaggcatggtggccggtgcctgtagtcccagttactaaggagagtgaggcagg-agaatcccttgaacccgggaggcggaggttgcagtgagcca-agatggtgccattgcactccagcctgggcaacatgagcgaaactcagt-ctc---------------------------------------ataaaaaga--aaagaaaagaaaaagaaaaaaaaagagaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213430 185 +    290775 gctaggcatggtggccggtgcctgtagtcccagctactaaggagagtgaggcaggaagaatcccttgaacccgggaggcggaggttgcagtgagcca-agatcgtgccattgcactccagcctgggcaacatgagcgaaactcagt-ctc---------------------------------------ataaaaaga--aaagaaaagaaaaagaaaaaaaaa-agaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663406 168 -   3067355 tctgggcatggtggccagtgcctgtggtcccagctactaaggagaatgaggcagg-agaatcccttgaacccgggaggcagaggttgcagtgagcca-agatcgtgccattgcactccagcttgggcaacatgagcgaaactcagt-ctc---------------------------------------aaaaaaaga--aaagaaat-----------------aaaa
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57961509 171 -  94987271 Gccaggtatggtggggtatctcggtaatctcagc-atttgggaagcaaaggcagt-aggatc----------aggagaccaaggtttttctcagctatatatcgag---tttcaggacagcctggactattt----gacactctatAATC---------------------------------------ATAACAACATCAACAAAAAGTCACAGTTTGTTACCTAAAA
i mm10.chr17               I 2464 C 0
e micMur3.chr6               153617  11 + 123392446 I
e dasNov3.JH582591            69530  29 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26251864   5 +  26524999 I
e otoGar3.GL873550           140471 535 +  18854210 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e cebCap1.NW_016107755v1     250670   0 -   1771730 C
e calJac3.chrUn_GL286223      41506   0 +    132061 C

a score=52194.000000
s hg38.chr6_GL000254v2_alt   916891 10 +   4827813 agaaATAAAG
s panTro5.chr6             29879803 10 + 175400573 aGAAATAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30114118 10 + 173848474 agaaaTAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5913062 10 +   6154872 aGAAATAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74627329 10 + 122973662 AGAAATAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110917 10 + 172585720 agaaaTAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774642 10 - 170955103 agaaaTAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821349 10 -   2996164 agaaaTAAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571468 10 +    766320 aTAAATACAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29028070 10 -  71996105 agaaaTAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213615 10 +    290775 aTAAATAAAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663574 10 -   3067355 agaaataaaC
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     250670 10 -   1771730 agaaataaaC
i cebCap1.NW_016107755v1   C 0 C 0
s mm10.chr17               57961680  7 -  94987271 GGAAGTG---
i mm10.chr17               C 0 C 0
e micMur3.chr6               153617 11 + 123392446 I
e dasNov3.JH582591            69530 29 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26251864  5 +  26524999 I
e otoGar3.GL873550           140471 535 +  18854210 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e calJac3.chrUn_GL286223      41506  0 +    132061 C

a score=58668.000000
s hg38.chr6_GL000254v2_alt   916901 6 +   4827813 CAGTAT
s panTro5.chr6             29879813 6 + 175400573 CAGTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30114128 6 + 173848474 CAGTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5913072 6 +   6154872 CAGTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74627339 6 + 122973662 CAGTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110927 6 + 172585720 CGGTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774652 6 - 170955103 CGGTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821359 6 -   2996164 CGGTAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571478 6 +    766320 CAGTAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29028080 6 -  71996105 CGGTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213625 6 +    290775 CAGTAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663584 6 -   3067355 CAGTAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      41506 6 +    132061 CAGTAT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     250680 6 -   1771730 CAGTAT
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               153628 6 + 123392446 CAGTAT
i micMur3.chr6             I 11 C 0
s mm10.chr17               57961687 6 -  94987271 CAGAAT
i mm10.chr17               C 0 C 0
e dasNov3.JH582591            69530 29 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26251864 5 +  26524999 I
e otoGar3.GL873550           140471 535 +  18854210 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I

a score=137915.000000
s hg38.chr6_GL000254v2_alt   916907 15 +   4827813 -GAAAGAGCAGCCCCT
s panTro5.chr6             29879819 15 + 175400573 -GAAAGAGCAGCCCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30114134 15 + 173848474 -GAAAGAGCAGCCCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5913078 15 +   6154872 -GAAAGAGCAGCCCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74627345 15 + 122973662 -GAAAGAGCAGCCCCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110933 15 + 172585720 -GAAAGAGCAGCCCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774658 15 - 170955103 -GAAAGAGCAGCCCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821365 15 -   2996164 -GAAAGAGCAGCCCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571484 15 +    766320 -GAAAGAGCAGCCCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29028086 15 -  71996105 -GAAAAAGCAGCCCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213631 15 +    290775 -GAAAGAGCAGCCCCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663590 15 -   3067355 -GAAAGAGCAGCCCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      41512 15 +    132061 -GAAAGAGCAGCCTTT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     250686 15 -   1771730 -GAAAGAGCAGCCTTT
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               153634 15 + 123392446 -GAAAGAGCAGCCCCT
i micMur3.chr6             C 0 I 326
s mm10.chr17               57961693  8 -  94987271 -GGGAGAGT-------
i mm10.chr17               C 0 I 3
s canFam3.chr35            26251869 15 +  26524999 GAAAGGAACACTCCC-
i canFam3.chr35            I 5 C 0
e dasNov3.JH582591            69530 29 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e otoGar3.GL873550           140471 535 +  18854210 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I

a score=293775.000000
s hg38.chr6_GL000254v2_alt   916922 40 +   4827813 GGCTGCATTCACCACAGCACCCATGCTCACACATGCTACA
s panTro5.chr6             29879834 40 + 175400573 GGCTGCATTCACCACAGCACCCATGCTCACACATGCTACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30114149 40 + 173848474 GGCTGCATTCACCACAGCACCCATGCTCACACATGCTACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5913093 40 +   6154872 GGCTGCATTCACCACAGCACCCATGCTCACACATGCTACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74627360 40 + 122973662 GGCTGCATTCACCACAGCACCCATGCTCACACACGCTACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110948 40 + 172585720 GGCTTCATTCACCACAGCACCAGTGCTCACACATGCTACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774673 40 - 170955103 GGCTTCATTCACCACAGCACCAGTGCTCACACATGCTACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821380 40 -   2996164 GGCTTCATTCACCACAGCACCAGTGCTCACACATGCTACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571499 40 +    766320 GGCTTCATTCACCACAGCACCAGTGCTCACACATGCTACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29028101 40 -  71996105 GGCTTCATTCACCACAGCACCAGTGCTCACACATGCTACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213646 40 +    290775 GGCTTCATTCACCACAGCACCAGTGCTCACACATGCTACA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663605 40 -   3067355 GGCTTCATTCACCACAGCACCAGTGCTCACACATGCTACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      41527 36 +    132061 GGC----TTCAACATAGCATCCATGCTCACACATGCCACA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     250701 36 -   1771730 GGC----TTCACCATAGCATCCATGCTCACACATGCTACA
i cebCap1.NW_016107755v1   C 0 I 1231
s mm10.chr17               57961704 27 -  94987271 TGCTT--TCTACCATGTGCTTGTTTCTCA-----------
i mm10.chr17               I 3 C 0
s canFam3.chr35            26251884 34 +  26524999 GAC----TTCACTACAACACACATGCTCA--CAGGCCACA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               153649 326 + 123392446 I
e dasNov3.JH582591            69530 29 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e otoGar3.GL873550           140471 535 +  18854210 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I

a score=126159.000000
s hg38.chr6_GL000254v2_alt   916962 17 +   4827813 GGCGCTCACTTGCTGGG--
s panTro5.chr6             29879874 17 + 175400573 AGCGCTCACCTGCTGGG--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30114189 17 + 173848474 AGCGCTCACCTGCTGGG--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5913133 17 +   6154872 AGCGCTCACTTGCTGGG--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74627400 17 + 122973662 AGCGCTCACTTGCTGGG--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30110988 17 + 172585720 AGCGCTTACTTGCTGGG--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774713 17 - 170955103 AGCGCTTACTTGCTGGG--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821420 17 -   2996164 AGCGCTTACTTGCTGGG--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571539 17 +    766320 AGCGCTTACTTGCTGGG--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29028141 17 -  71996105 AGCGCTTACTTGCTGGG--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213686 17 +    290775 AGCGCTTACTTGCTGGG--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663645 17 -   3067355 AGCGCTTACTTGTGGGG--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      41563 17 +    132061 AGTTCCCATTTGCTGGG--
i calJac3.chrUn_GL286223   C 0 C 0
s mm10.chr17               57961731 17 -  94987271 AACACTCATTTGATAGG--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26251918 18 +  26524999 -GTGCTTGCTTGCTGGGTT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               153649 326 + 123392446 I
e dasNov3.JH582591            69530 29 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e otoGar3.GL873550           140471 535 +  18854210 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e cebCap1.NW_016107755v1     250737 1231 -   1771730 I

a score=84920.000000
s hg38.chr6_GL000254v2_alt   916979 12 +   4827813 AGCTGCCTCACA
s panTro5.chr6             29879891 12 + 175400573 AGCTGCCTCACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30114206 12 + 173848474 AGCTGCCTCACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5913150 12 +   6154872 AGCTGCCTCACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74627417 12 + 122973662 AGCTGCCTCACG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30111005 12 + 172585720 AGCTGCCTCACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774730 12 - 170955103 AGCTGCCTCACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821437 12 -   2996164 AGCTGCCTCACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571556 11 +    766320 AGCTGCCTCAC-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29028158 12 -  71996105 AGCTGCCTCACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     213703 12 +    290775 AGCTGCCTCACA
i manLeu1.NW_012099233v1   C 0 I 4158
s colAng1.NW_012115566v1    2663662 12 -   3067355 AGCTGCCTCACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      41580 12 +    132061 AGCTGCCTCATA
i calJac3.chrUn_GL286223   C 0 C 0
s mm10.chr17               57961748 12 -  94987271 AATTGCATCAGG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26251936 10 +  26524999 AGCTGTGCCA--
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            69559 12 +    102524 AGATCCCCCTGG
i dasNov3.JH582591         I 29 C 0
e micMur3.chr6               153649 326 + 123392446 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e otoGar3.GL873550           140471 535 +  18854210 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e cebCap1.NW_016107755v1     250737 1231 -   1771730 I

a score=796177.000000
s hg38.chr6_GL000254v2_alt   916991 102 +   4827813 TTGATTCGGATCAGTGTTCTCATTTCTCCGACCTACCTAGGAAGCATCTGGCTAAATTGATGTAAATTAGACATT--TTATAGTCTAT---CGGTC-ATTGAGCCTCA
s panTro5.chr6             29879903 102 + 175400573 TTGATTCGGATCAGTGTTCTCATTTCTCCGACCTACCTAGGAAGCATCTGGCTAAATTGATGTAAATTAGACATT--TTATAGTCTAT---CGGTC-ATTGAGCCTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30114218 102 + 173848474 TTGATTCGGATCAGTGTTCTCATTTCTCCGACCTACCTAGGAAGCATCTGGCTAAATTGATGTAAATTAGACATT--TTATAGTCTAT---CGGTC-ATTGAGCCTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5913162 102 +   6154872 TTGATTCGGATCAGTGTTCTCATTTCTCCGACCTACCTAGGAAGCATCTGGCTAAATTGATGTAAATTAGACATT--TTATAGTCTAT---CAGTC-ATTGAGCCTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74627429 102 + 122973662 TTGATTCGGATCAGTGTTCTCATTTCTCCGACCTACCTAGGAAGCATCTGGCTAAATTGACGTAAATTAGACATT--TTATAGTCTAT---CAGTC-ATTGAGCCTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30111017 102 + 172585720 TTGATTCGGATCAGTGTTCTCATTTCTCCGACCTACCTAGGAAGCATCTGGCTAAATGGATGTAAATTAGACATT--TTATAGTCTAT---CAGTC-ATTGAGCCTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774742 102 - 170955103 TTGATTCGGATCAGTGTTCTCATTTCTCCGACCTACCTAGGAAGCATCTGGCTAAATGGATGTAAATTAGACATT--TTATAGTCTAT---CAGTC-ATTGAGCCTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821449 102 -   2996164 TTGATTCGGATTAGTGTTCTCATTTCTCCGACCTACCTAGGAAGCATCTGGCTAAATTGATGTAAATTAGACATT--TTATAGTCTAT---CAGTC-ATTGAGCCTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571567  90 +    766320 ------------AGTGTTCTCATTTCTCCGACCTACCTAGGAAGCATCTGGCTAAATGGATGTAAATTAGACATT--TTATAGTCTAT---CAGTC-ATTGAGCCTCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29028170 102 -  71996105 TTGATTCGGATCAGTGTTCTCATTTCTCCGACCTACCTAGGAAGCATCTGGCTAAATGGATGTAAATTAGACATT--TTATAGTCTAT---CAGCC-ATTGAGCCTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     217873 102 +    290775 TTGATTCGGATCAGTGTCCTCATTTCTCCGACCTACCTAGGAAGCATCTGGCTAAATGGATGTAAATTAGACATT--TTATAGTCTAT---CAGTC-ATTGAGCCTCA
i manLeu1.NW_012099233v1   I 4158 C 0
s colAng1.NW_012115566v1    2663674 102 -   3067355 TTGATTCGGATCAGTGTTCTCATTTCTCCGACCTACCTAGGAAGCATCTGGCTAAATGGATGTAAATTAGACATT--TTATAGTCTAT---CAGTC-GTTGAGCCTCG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      41592  96 +    132061 CTGATTCGGATCTGTGTTCTCATTTCTCAGACT-------GAAGCATCTGGCTAAGTGGATATAAATTAGACATT--TTATAGTCTGT---CACTCAATTGAGCTTCG
i calJac3.chrUn_GL286223   C 0 C 0
s mm10.chr17               57961760  99 -  94987271 CTGGTTCATGTCAGCATTATTATTTTCCCAGCAAACCTATGAGGCTTCTCGCTAAATGGGGATAGCCTGGACCTT--TCA---TCTAT---CAGTC-ACTGAATCCCA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26251946 100 +  26524999 --GGTTTG---CAGTGTTGCCATTCCTTCCACCTACCTGTGAAACATCTGCTTAAATGGATATGGATTAGACCCT--GTTCAGCCAGTGGATAGTC-ACGGAGTCTCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            69571 101 +    102524 TTGATTCAGACCAGCG--CCCATTTCCACAGCAGACC-GTGGGGCATGAGTCTAAACGTGTAAAAATAGGAGTTTGCCTATAGTCCAT---CAGTC-GCCAGGTCTCA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               153649 326 + 123392446 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e otoGar3.GL873550           140471 535 +  18854210 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e cebCap1.NW_016107755v1     250737 1231 -   1771730 I

a score=76992.000000
s hg38.chr6_GL000254v2_alt   917093 7 +   4827813 GTGGAAT
s panTro5.chr6             29880005 7 + 175400573 GTGGAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30114320 7 + 173848474 GTGGAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5913264 7 +   6154872 GTGGAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74627531 7 + 122973662 GTGGAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30111119 7 + 172585720 GTGGAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774844 7 - 170955103 GTGGAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821551 7 -   2996164 GTGGAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571657 7 +    766320 GTGGAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29028272 7 -  71996105 GTGGAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     217975 7 +    290775 GTGGAAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663776 7 -   3067355 GTGGAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      41688 7 +    132061 GTGGAAT
i calJac3.chrUn_GL286223   C 0 I 319
s micMur3.chr6               153975 7 + 123392446 GTGGAAT
i micMur3.chr6             I 326 C 0
s mm10.chr17               57961859 7 -  94987271 GTAGACT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26252046 6 +  26524999 -CGGGAC
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            69672 7 +    102524 GTGGAAT
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e otoGar3.GL873550           140471 535 +  18854210 I
e aotNan1.NW_018509740v1     332909 394 -    457564 I
e cebCap1.NW_016107755v1     250737 1231 -   1771730 I

a score=293430.000000
s hg38.chr6_GL000254v2_alt   917100 31 +   4827813 ATCTAGACCAATTTAAACACACAAATATTAT--
s panTro5.chr6             29880012 31 + 175400573 ATCTAGACCAATTTAAACACACAAATATTAT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30114327 31 + 173848474 ATCTAGACCAATTTAAACACACAAATATTAT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5913271 31 +   6154872 ATCTAGACCAATTTAGACACACAAATATTAT--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74627538 31 + 122973662 ATCTAGACCAATTTAAACACACAAATATTAT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30111126 28 + 172585720 ATCTAGACCAATTTAAACACACAAA---TAT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774851 28 - 170955103 ATCTAGACCAATTTAAACACACAAA---TAT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821558 28 -   2996164 ATCTAGACCAATTTAAACACACAAA---TAT--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571664 28 +    766320 ATCTAGACCAATTTAAACACACAAA---TAT--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29028279 28 -  71996105 ATCTAGACCAATTTAAACACACAAA---TAT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     217982 28 +    290775 ATCTAGACCAATTTAAACACACAAA---TAT--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663783 28 -   3067355 ATCTAGACCAATTTAAACACACAAA---TAT--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      42014 29 +    132061 ATCTAGACCAATTTAAATACACATG--TTAG--
i calJac3.chrUn_GL286223   I 319 C 0
s cebCap1.NW_016107755v1     251968 29 -   1771730 ATCTAGACCAATTTAAATACACATA--TTAG--
i cebCap1.NW_016107755v1   I 1231 C 0
s aotNan1.NW_018509740v1     333303 29 -    457564 ATCTAGACCAGTTTAAATACACATA--TTAG--
i aotNan1.NW_018509740v1   I 394 C 0
s micMur3.chr6               153982 31 + 123392446 ATCCACACCAATTTAAACACACAAATAGTAT--
i micMur3.chr6             C 0 C 0
s mm10.chr17               57961866 28 -  94987271 CTTCAGATTCATTCAAACACACCAG---TAT--
i mm10.chr17               C 0 I 1784
s canFam3.chr35            26252053 29 +  26524999 ATTCAGACCAACTTAAACACAGATG--CTAT--
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            69679 30 +    102524 ATCCAGACCAATGGAAACTCACCAA---TGTTC
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e otoGar3.GL873550           140471 535 +  18854210 I

a score=335736.000000
s hg38.chr6_GL000254v2_alt   917131 38 +   4827813 GGGAAATAG-GGCCACAAAAGTAGAAAAGAAAACGTG-AA-
s panTro5.chr6             29880043 36 + 175400573 GGGAAATAG-GGCCACAAAAGAAGAAAAGAAAAC--G-AA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30114358 38 + 173848474 GGGAAATAG-GGCCACAAAAGAAGAAAAGAAAACGTG-AA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5913302 38 +   6154872 GGGAAATAG-GGCCACAAAAGTAGAAAAGAAAACGTG-AA-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74627569 38 + 122973662 GGGAAATAG-GGCCACAAAAGTAGAAAAGAAAACGTG-AA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30111154 39 + 172585720 GGGAAATAACCGCCACAAAAGTAGAAAAGAAAAAATG-AA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774879 39 - 170955103 GGGAAATAACCGCCACAAAAGTAGAAAAGAAAAAATG-AA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821586 39 -   2996164 GGGAAATAACCGCCACAAAAGTAGAAAAGAAAAAATG-AA-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571692 39 +    766320 GGGAAATAACCACCACAAAAGTAGAAAAGAAAAAGTG-AA-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29028307 39 -  71996105 GGGAAATAACCGCCACAAAAGTAGAAAAGAAAAAATG-AA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     218010 39 +    290775 GGGAAATAACCACCACAAAAGTAGAAAAGAAAAAGTG-AA-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663811 39 -   3067355 GGGAAATAACGGCCACAAACGTGGAAAAGAAAAAATG-AA-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      42043 39 +    132061 GAGAAATAG-TGCCACAAAAGTAGAAAACAAAATGTGAAA-
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     251997 39 -   1771730 GAGAAATAG-TGCCACAAAAGTAAAAAAGAAAACGTGAAA-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     333332 39 -    457564 GAGAAATAG-TGCCACAAAAGTAGAAAAGAAAATGTGAAA-
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               154013 37 + 123392446 GA-AAATAG-GACCATAAAAGTAAAAAAGAAAATCTC-AA-
i micMur3.chr6             C 0 I 1
s canFam3.chr35            26252082 37 +  26524999 -GGAAAGAG-AGCCACAAAAGTGGAAAAGGAAACATC-AA-
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            69709 38 +    102524 AGGAAACAG-GGCCACAAAAGTAG-AAAGAGGATGTC-AAA
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e otoGar3.GL873550           140471 535 +  18854210 I

a score=272124.000000
s hg38.chr6_GL000254v2_alt   917169 23 +   4827813 TTCCTCTTTATATT----TATGCCACT
s panTro5.chr6             29880079 23 + 175400573 TTCCTCTTTATATT----TATGCCACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30114396 23 + 173848474 TTCCTCTTTATATT----TATGCCACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5913340 23 +   6154872 TTCCTCTTTATATT----TATGCCACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74627607 23 + 122973662 TTCCTCTTTATATA----TATGCCACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30111193 23 + 172585720 TTCCTCTTTATATT----TATGCCACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774918 23 - 170955103 TTCCTCTTTATATT----TATGCCACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821625 23 -   2996164 TTCCTCTTTATATT----TATGCCACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571731 23 +    766320 TTCCTCTTTATATT----TATGCCACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29028346 23 -  71996105 TTCCTCTTTATATT----TATGCCACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     218049 23 +    290775 TTCCTCTTTATATT----TATGCCACT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663850 23 -   3067355 TTCCTCTTTATATT----TATGCCACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      42082 23 +    132061 CGCCTCTTTATATT----TATGCCACT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     252036 23 -   1771730 TTCCTTTTTATATT----TGTGCCACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     333371 23 -    457564 CTCCTCTTTATATT----TATGCCACT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               154051 23 + 123392446 TTCCTCTTGATATT----TATGTCACT
i micMur3.chr6             I 1 I 15760
s otoGar3.GL873550         18710940 27 -  18854210 TTCTTCCTTACACCAGCATGTGCCACC
i otoGar3.GL873550         T 73261 C 0
s canFam3.chr35            26252120 20 +  26524999 TTCCTCTTAATATT----CA---CACT
i canFam3.chr35            I 1 I 3
s dasNov3.JH582591            69747 21 +    102524 TTCCCC--AGCCTC----TATGGCACT
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I

a score=488998.000000
s hg38.chr6_GL000254v2_alt   917192 53 +   4827813 AGAGGGAGTTCCAG-----A---AGAAAATCAC-TGCATGTAAGGGCTAATGACTGTattta
s panTro5.chr6             29880102 53 + 175400573 AGAGGGAGTTCCAG-----A---AGAAAATCAC-TGCATGTAAGGGCtaatgactgtattta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30114419 53 + 173848474 AGAGGGAGTTCCAG-----A---AGAAAATCAC-TGCATGTAAGGGCTAATGACTGTattta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5913363 53 +   6154872 AGAGGGAGTTCCAG-----A---AGAAAATCAC-TGCATGTAAGGGCTAATGACTGTattta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74627630 53 + 122973662 AGAGGGAGTTCCAG-----A---AGAAAATCAC-TGCATGTAAGGGCtaatgactgcattta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30111216 56 + 172585720 AGAGGGAGTTCCAG-----GAAAAAAAAATCAC-TGCATGTAAGAGCtaatgactgcattta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774941 55 - 170955103 AGAGGGAGTTCCAG-----G-AAAAAAAATCAC-TGCATGTAAGAGCtaatgactgcattta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821648 55 -   2996164 AGAGGGAGTTCCAG-----T-AAAAAAAATCAC-TGCATGTAAGAGCtaatgactgcattta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571754 53 +    766320 AGAGGGAGTTCCAG-----G---AGAAAATCAC-TGCATGTAAGAGTTAATGACTGcattta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29028369 53 -  71996105 AGAGGGAGTTCCAG-----G---AGAAAATCGC-TGCAGGTAAGAGCtaataactgcattta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     218072 53 +    290775 AGAGGGAGTTCCAG-----G---AGAAAATCAC-TGCATGTAAGAGTtaatgactgcatttg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663873 53 -   3067355 AGAGGGAGTTCCAG-----C---AGAAAATCAC-TGCATGTAAGGGCTAATGACTGcattta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      42105 56 +    132061 AGAGGGAGTTCCAG--AAAA---AAAAAATCAC-TGCATGTAAGAGATATTGACTGcactta
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     252059 54 -   1771730 AGAGGGAGTTCCAG----GA---AAAAAATCAC-TGCATGTAAGCGCtaatgacagcactta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     333394 58 -    457564 AGAGGGAGTTCCAGAAAAAA---AGAAAATCAC-TGCACGTAAGAGCtaatgacagcactta
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550         18710967 53 -  18854210 AGAGGGCGCTCCAG-----G---AGAAAGTCAC-TGCCTACAAGGACTAAAGATAGCGGTTA
i otoGar3.GL873550         C 0 n 0
s canFam3.chr35            26252143 49 +  26524999 AGAGGCAGTCCCAG-----A---AGAGAAGTGCGTGCAGGTGAGGGTTAAC-ACAGCA----
i canFam3.chr35            I 3 C 0
s dasNov3.JH582591            69768 44 +    102524 ----GGAGTTCCCG-----G---AGGAAGCT---CGCCTGTGAAGACAAACGGCAGTGC---
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I

a score=675733.000000
s hg38.chr6_GL000254v2_alt   917245 74 +   4827813 ctgagt-ggttactgtgtaccattcacagttcacagggactcattcatgtcattctcatgataaccctgatgaag
s panTro5.chr6             29880155 74 + 175400573 ctgagt-ggttactgtgtaccattcacagttcacagggactcattcatgtcattctcatgataaccctgatgaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30114472 74 + 173848474 ctgagt-ggttactgtgtaccattcacagttcacagggactcattcaggtcattctcatgataaccctgatgaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5913416 75 +   6154872 ctgagtgggttactgtgtaccattcacagttcacagggactcattcatgtcattctcattataaccctgatgaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74627683 74 + 122973662 ctgagt-ggttactgtgtaccattcacagttcacagggactcattcatgtcgttctcatgataacgctgatgagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30111272 74 + 172585720 ctgagt-ggttactgtgtaccattcacagttaacagggactcattcatggaattctcatgataaccctggtgagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29774996 74 - 170955103 ctgagt-ggttactgtgtaccattcacagttaacagggactcattcatggaattctcatgataaccctggtgagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821703 74 -   2996164 ctgagg-ggttactgtgtactattcacagttaacagggactcattcatggaattctcatgataaccctggtgagg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571807 74 +    766320 ctgagt-ggttactgtgtaccattcacagttaacagggactgattcatggaattctcatgataaccctggtgagg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29028422 74 -  71996105 ctgagt-ggttactgtgtaccattcacagttaacagggactgattcatggaattctcatgataaccctggtgagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     218125 74 +    290775 ctgagt-ggttactgtgtaccattcacagttaacagggactcattcatggaattctcatgattaccctggtgagg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2663926 74 -   3067355 ctgagt-ggttactgtgtaccattcacagttaacagggactcattcatggaattctcatgataaccctggtgagc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      42161 74 +    132061 ctgagg-ggttactgtgtagaattcacagctcacagggactcattcatggaattctcatgacagccctgatgaag
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     252113 74 -   1771730 ccgagg-ggttactgtgtagaattcacagttcacaaggactcattcatggaattctcacaacagccctgatgagg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     333452 74 -    457564 ctgagg-ggttactgtgtagaattcacggttcacagggactcattcatggaattctcatgacagccctgatgagg
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26252192 72 +  26524999 CAGAGT-GCACAGTGTGTGTGG-TCACA-TTCACAGGGAGTCACTCCTGTAATTCTCAGCAAAGCCCTCCAGAGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            69812 69 +    102524 CCAAGT-GG--ACCCCGGCACATTCGCAGTTCACGGGGACTCACCCACGTCGTTCCCAGG---GCCCCTACGAGG
i dasNov3.JH582591         C 0 I 192
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e otoGar3.GL873550         18711020  0 -  18854210 I

a score=664460.000000
s hg38.chr6_GL000254v2_alt   917319 72 +   4827813 tggatgatattattccctcactcactaaggagaaagccagggtacagtgaagtAtacaactttgtgcagggc
s panTro5.chr6             29880229 72 + 175400573 tggatgatattattccctcactcactaaggagaaagccagggtacagtgaagtAtacaactttgtgcagggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30114546 72 + 173848474 tggatgatattattccctcactcactaaggagaaagccagggtacagtgaagtAtacaactttgtgcagggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5913491 72 +   6154872 tggatgatattattccctcactcactaaggagaaagccagggtacagtgaagtAtacaactttgtgcagggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74627757 72 + 122973662 tggatgatattattccctcactcactaaggagaaagccagggtacagtgaagtAtacaactttgtgcagggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30111346 72 + 172585720 tggatgatattattccctcactcactaaggagaaagccagggtacagtgaagtgtacaactttgtgtagggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29775070 72 - 170955103 tggatgatattattccctcactcactaaggagaaagccagggtacagtgaagtgtacaactttgtgtagggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821777 72 -   2996164 tggatgatattattccctcactcactaaggagaaagccagggtacagtgaagtgtacaactttgtgtagggc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571881 72 +    766320 tggatgatattattccctcactcactaaggagaaagccagggtacagtgaagtGTACAACTTTGTGTAGGAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29028496 72 -  71996105 tggatgatattattccctcactcactaaggagaaagccagggtacagtgaagtgtacaactttgtgtagggc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     218199 72 +    290775 tggatgatattattccctcactcactaaggagaaagccagggtacagtgaagtgtacaactttgtgtagggc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2664000 72 -   3067355 tggatgatattattccctcactcactaaggagaaagccagggtacagtgaagtAtacaactttgtgtagggc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      42235 72 +    132061 tggatgatattgtccccccactcactagcgggaaagccagggtatagtggagtATACGACTTTGTGCAGgac
i calJac3.chrUn_GL286223   C 0 I 773
s cebCap1.NW_016107755v1     252187 72 -   1771730 tggatgatattattcccctactcactagggagaaagccagggtatagtgaagtATACGActttgtgcaggac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     333526 72 -    457564 tggatgatattatccccccactcactagggagaaagccagggtatagtgaagtAtacaactttgtgcaggac
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26252264 29 +  26524999 TGGCTGTTA-------------------------------------------GATATaccttggtgcagggc
i canFam3.chr35            C 0 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            69881 192 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e otoGar3.GL873550         18711020  0 -  18854210 I

a score=678487.000000
s hg38.chr6_GL000254v2_alt   917391 89 +   4827813 aatttatcaatatttattgaaattaccaaaaaacatgctctctgaacaaactattctacCAGTGTAGAAAGcagagtaaacttcatggg
s panTro5.chr6             29880301 89 + 175400573 aatttatcaatatttattgaaattaccaaaaaacatgctctctgaacaaactattctacCAGTGTAGAAAGcagagtaaacttcatggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30114618 89 + 173848474 aatttatcaatatttattgaaattaccaaaaaacatgctctctgaacaaactattctacCAGTGTAGAAAGcagagtaaacttcatggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5913563 89 +   6154872 aatttatcaatatttattgaaattaccaaaaaacatgctctctgaacaaactattctacCAGTGTAGAAAGcagagtaaacttcatggg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74627829 89 + 122973662 aatttatcaatatttattgaaattaccaaaaaacatggtctctgaacaaactattctacCAGTGTAGAAAGcagagtaaacttcacggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30111418 85 + 172585720 aatttatcaatatttattgaaattgccaaaaaatatgctctctgaacaaactattcT----GTGTATAAAGcagagtaaacttcatggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29775142 85 - 170955103 aatttatcaatatttattgaaattgccaaaaaatatgctctctgaacaaactattcT----GTGTATAAAGcagagtaaacttcatggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821849 85 -   2996164 aatttatcaatatttattgaaattgccaaaaaatatgctctctgaacaaactattcT----GTGTATAAAGcagagtaaacttcatggg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     571953 85 +    766320 AATTTATCAATATTTATTGAAATTGCCAAAAAACATGCTCTCTGAACAAACTGTTCT----GTGTATAAAGcagagtaaacttcatggg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29028568 85 -  71996105 aatttatcaatatttattgaaattgccaaaaaacatgctctctgaacaaactattcT----GTGTATAAAGcagagtaaacttcatggg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     218271 85 +    290775 aatttatcaatatttattgaaattgccaaaaaacatgctctctgaACAAACTGTTCT----GTGTATAAAGcagagtaaacttcatggg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2664072 85 -   3067355 aatttatcaatatttattgaaattgccaaaaaacatgctctctgaacaaacgattcT----GTGTATAAAGcagagtaaacttcatggg
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     252259 89 -   1771730 aatgtatcaatatttattaaaattacaaatatgcctgctctctgaacaaactattctacctGTGTATAAAGcagagtgaacttcctggg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     333598 89 -    457564 aatttatcaatatttattaaaattacaaatatacctgctctctgaacaaactattctacCCGTGTATAAAGcagagtgaacttcctggg
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26252293 86 +  26524999 aatctgtccatgtgtattaagatgacaaaggcacatgctccttgaactagcaacttcaGC-ATGTAGAAGGC--AGTGACCTTCATGAG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            69881 192 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e otoGar3.GL873550         18711020  0 -  18854210 I
e calJac3.chrUn_GL286223      42307 773 +    132061 I

a score=600443.000000
s hg38.chr6_GL000254v2_alt   917480 76 +   4827813 tgagtgaccagggcagtcacac----------aagggccccatgcttagaaggg-atactgtgtttgggttctaaagctctgtggtt
s panTro5.chr6             29880390 76 + 175400573 tgagtgaccagggcagtcacac----------aagggccccatgcttagaaggg-atactgtgtttgggttctaaagctctgtggtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30114707 76 + 173848474 tgagtgaccagggcagtcacac----------aagggccccatgcttagaaggg-atactgtgtttgggttctaaagctctgtggtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5913652 76 +   6154872 tgagtggccagggcagtcacac----------aagggccccatgcttagaaggg-atactgtgtttgggttctaaagctctgtggtt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74627918 76 + 122973662 tgagtgaccagggcagtcacac----------aagggccccgtgcttagaaggg-atactgtgtttgggttctaaagctctgtggtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30111503 77 + 172585720 tgagtgaccagggcagtcacac----------aagggccccatacttagaagggaatactgtgtttgggttctaaagctctgtggtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29775227 77 - 170955103 tgagtgaccagggcagtcacac----------aagggccccatacttagaagggaatactgtgtttgggttctaaagctctgtggtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2821934 77 -   2996164 tgagtgaccagggcagtcacac----------aagggccccatacttagaagggaatactgtgtttgggttctaaagctctgtggtt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     572038 77 +    766320 tgagtgaccagggcagtcacac----------aagggccccacacttagaagggaatactatgtttgggttctaaagctctgtgatt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29028653 77 -  71996105 tgagtgaccagggcagtcacac----------aagggccccatacttagaagagaatactgtgtttgggttctaaagctctgtggtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     218356 77 +    290775 tgagtgaccagggcagtcacac----------aagggccccacacttagaagggaatactatgtttgggttctaaagctctgtgatt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2664157 76 -   3067355 tgagtgaccagggcagtcatac----------aagggccccatacttagaaggg-gtactggatttgggttctaaagctctgtggtt
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     252348 77 -   1771730 taagtgaccagggcagtcacac----------aagggcccaatgcttagaaggggatactgtgttttggttctaaagctctgtggtt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     333687 77 -    457564 taagtgaccagggcagtcacac----------aagggacccatgcttagaaggggatactgtcttttggttctaaagctctgtggtt
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26252379 64 +  26524999 TACTCGGCcaggacacc-------------------gctctatac-cagaagg--aggccgtgtctggcttctcatgctctgtgtc-
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            70073 86 +    102524 TGAGCCACAGGTGCACTCGCTCTCTGAGGCAGCAGTGCCCCCCGCGCAGCAGGC-AGTGAGTCCGTGGGCCCCCAGGGCAGGTGGCC
i dasNov3.JH582591         I 192 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e otoGar3.GL873550         18711020  0 -  18854210 I
e calJac3.chrUn_GL286223      42307 773 +    132061 I

a score=2272858.000000
s hg38.chr6_GL000254v2_alt   917556 286 +   4827813 cctgtcttgaaattcttaataattttatctttc---aatttgtgtcttat-aatgaagtccgatgagaaagcagaacatgggctagagacttttggagcct-ggctcaagcgaggtcctgctccccatgcctcccagcctccccaggactggttttcagctgcc-----------------ggctcca-------cca----ccttctg-TGCAGGCTCGCTCCC-AGCAGGGGCCTGGGAACAGTGGAAAGGAGGGGAGC-GGTCAGGCATA--CACACCTCCCTTGccaaatggaaggcatggccctaggcacttgtgaaga
s panTro5.chr6             29880466 287 + 175400573 cctgtcttgaaattcttaataattttatctttc---aatttgtgtcttat-aatgaagtccgatgagaaagcagaacatgggctagagacttttggagcctcggcccaagcgaggtcctgctccccatgcctcccagcctccccaggactggttttcagctgcc-----------------ggctcca-------cct----ccttctg-TGCAGGCTCGCTCCC-AGCAGGGGCCTGGGAACAGTGGAAAGGAGGGGAGC-GGTCAGGCATA--CACACCTCCCTTGccaaatggaaggcatggccctaggcacttgtgaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30114783 287 + 173848474 cctgtcttgaaattcttaataattttatctttc---aatttgtgtcttat-aatgaagtccgatgagaaagcagaacatgggctagagacttttggagcctcggcccaagcgaggtcctgctccccatgcctcccagcctccccaggactggttttcagctgcc-----------------ggctcca-------cct----ccttctg-TGCAGGCTCGCTCCC-AGCAGGGGCCTGGGAACAGTGGAAAGGAGGGGAGC-GGTCAGGCATA--CACACCTCCCTTGccaaatggaaggcatggccctaggcacttgtgaaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5913728 287 +   6154872 cctgtcttgaaattcttaataattttatctttc---aatttgtgtcttat-aatgaagtccgatgagaaggcagaacatgggctagagacttttggagcctcggcccaagcgaggtcctgctccccatgcctcccagcctccccaggactggttttcagctgcc-----------------ggctcca-------cca----ccttctg-TGCAGGCTCGCTCCC-AGCAGGGGACTGGGAACAGTGGAAAGGAGGGGAGC-GGTCAGGCATA--CACACCTCCCTTGccaaatggaaggcatggccctaggcacttgtgaaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74627994 287 + 122973662 cctgtcttgaaattcttaatagttttatctttc---aatttgtgtcttat-aatgaagtccgatgagaaagcagaacatgggctagagacttttggagcctcggcccaagcgaggtcctgctccccatgcctcccagcctccccaggactggttttcagctgcc-----------------agctcca-------cga----ccttctg-TGCAGGCTCGCTCCC-AGCAGGGGCCTGGGAACAGTGGAAAGGAGGGGAGC-GGTCAGGCCTA--CTTACCTCCCTTGccaaatggaaggcatggccctaggcatttgtgaagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30111580 276 + 172585720 cctgtcttgaaattcttaataattttatctttc---aatttgtgtcttat-aatgaggtccgatgagaaagcagaacatgggctagagactcatggagccttagcccaaacgaggtcctgctccccatgcctcccaagctccccagcactggttttcagctgcc-----------------ggctcca-------cca----ccttctg-TGTAGGCTCGCTCCC-AGCAGGGGCCTGGGCACAGCGGAAATGATGgggga-ggtcaggcata--cacacctcccttgccaaatgga-----------taggcacttgtgaaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29775304 276 - 170955103 cctgtcttgaaattcttaataattttatctttc---aatttgtgtcttat-aatgaggtccgatgagaaagcagaacatgggctagagactcatggagccttagcccaaacgaggtcctgctccccatgcctcccaagctccccagcactggttttcagctgcc-----------------ggctcca-------cca----ccttctg-TGTAGGCTCGCTCCC-AGCAGGGGCCTGGGCACAGCGGAAATGATGGGGGA-GGTCAGGCATA--CACACCTCCCTTGCCAAATGGA-----------TAggcacttgtgaaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2822011 276 -   2996164 cctgtcttgaaattcttaataattttatctttc---aatttgtgtcttat-aatgaggtccgatgagaaagcagaacatgggctagagactcatggagccttagcccaaacgaggtcctgctccccatgcctcccaagctccccagcactggttttcagctgcc-----------------ggctcca-------cca----ccttctg-TGTAGGCTCGCTCCC-AGCAGAGGCCTGGGCACAGCGGAAATGATGGGGGA-GGTCAGGCATA--CACACCTCCCTTGCCAAATGGA-----------TAggcacttgtgaaga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     572115 276 +    766320 cctgtcttgaaattcttaataattttatctttc---aatttgtgtcttat-aatgaggtccgatgagaaagcagaacatgggctagagactcttggagccttggcccaaacgaggtccttctccccgtgcctcccaagctccccagcactggttttcagctgcc-----------------cgctccg-------cca----ccttctg-TGTAGGCTCGCTCCC-AGCAGGGGCCTGGGCACAGCGGAAATGATGgggga-ggtcaggcata--cacacctcccttgccaaatgga-----------taggcacttgtgaaga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29028730 276 -  71996105 cctgtcttgaaattcttaataattttatctttc---aatttgtgtcttat-aatgaggtccgatgagaaagcagaacatgggctagagactcttggagccttggcccaaacgaggtcctgctccccgtgcctcccaagctccccagcactggtttacagctgcc-----------------agctcca-------cca----ccttctg-TGTAGGCTCGCTCCC-AGCAGGGGCCTGGGCACAGCGGAAATGATGGGGGA-GGTCAGGCATA--CACACCTCCCTTGCCAAATGGA-----------TAggcacttgtgaaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     218433 276 +    290775 cctgtcttgaaattcttaataattttatctttc---aatttgtgtcttat-aatgaggtccgatgagaaagcagaacatgggctagagactcttggagccttggcccaaacgaggtccttctccccgtgcctcccaagctccccagcactggttttcagctgcc-----------------cgctccg-------cca----ccttctg-TGTAGGCTCGCTCCC-AGCAGGGGCCTGGGCACAGCGGAAATGATGGGGGA-GGTCAGGCATA--CACACCTCCCTTGCCAAATGGA-----------TAggcacttgtgaaga
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2664233 290 -   3067355 cctgtcttgaaattcttaataattttatctttcaaaaatttgtgtcttat-aatgaggtccgatgagaaagcagaacatgggctagagactcttggagccttggcccaaacgaggtcctgctccctatgcctcccaacctccccaacactggttttcagctgcc-----------------ggctcca-------cca----ccttctg-TGTAGGCTCGCTCCC-AACAGGGGCCTGGGCACAGCGGAAATGATGGAGGA-GGTCAGGTATA--CACACCTCCCTTGccaaacggaaggcatggccctgggcacttgtgaaga
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     252425 272 -   1771730 cctgtgctgaaatttttaataattttatctttc---aattcgtgtctc------aaagtcctatgagaatgcagaacatgggctggagacttttggagccttagttcaagcgaagtcccgctctcctttcct---------cccaggactagttttcagctgcc-----------------tgctcca-------cca----ccctctg-TTCAGGCTCACTCCC-AAAGGTAGCCTGGGCATAGCGGAATGGAGGGGAGG-AGCCAGGCATA--CACACCTCCCTTGCCGAA-GGAAGGCATGGACAAAggcacttgtgaaga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     333764 277 -    457564 cctgtgttgaaattcttaataattttatctttc---aattcttatctcat-aataaagtccgatgagaatgcagaacatgggctggagacttttggagcctcagttaaagcgaggtcctgctccactttcct---------cccaggactgattttcagctgcc-----------------tgttcca-------cca----ccttctg-TGCAGGCTCACTCCC-AACAGTAGCCTGGGCACAGCGGAAAGGAGGGGAGG-AGCCAGGCATA--CACACCTCCCTTGCCGAA-GGAAGTCATGGACGTAggcacttgtgaaga
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           141006 276 +  18854210 Cctatcttgaaatttttaataattttatctctc---agtttg------aa-agtgaagtctgattagacaacagagcatgtattgggaact--tggagcctgggctcaagcttcatcctgctctccacatcgtccagcctctccaggattggttttcagctgcc-----------------tgctcct-------cta----ccTG-GG-TGCTGCCTCCCTCCC-AGCTTGGGTCTGGCCACAGGGGAGGGAAAGAGAGATGATGATGCACA--CTCACCTATGATGCCAAGTGGAAGGCAAGGTCCTAAGCATTTG---AAT
i otoGar3.GL873550         I 535 C 0
s canFam3.chr35            26252443 289 +  26524999 atcgcctggagattctcagccatcttatctttc---catt-gtgttttgtcagtggagtccaaagagatcaca---------ctgggg---cttggaggccaggctcaagctccatcttgctttccatgcctcccagcgcctgcaggactggttttcagctgcctcccactcccctCAGGAGACACCA-------CCACGCTCTCTCTG-TTCAGTGTT-TTCCC-AGAAGGGGCCCAGGCAAAGGGATAAGGAAG------GGACAGACAC---CATACCTGTCTAGGTAAGTCTGGGGTGGTGTCTTGGACACCTGTGAAGA
i canFam3.chr35            C 0 I 146
s dasNov3.JH582591            70159 248 +    102524 GCAGTCCTGAAGTTCTCCATG---TTACCCCG----ACCCTGAGTTCTGT-GATGA-GTGCCCTGAGAAGACAG---GCGCGCTGGG-------------------CTGGCTGCGTCCCGCCCCCTACACCC------CTCTCCTGGGCTGGCTTCCCGCCTCT-----------------CCCTCCACTGGGCCCCC----CCTCCCGCTGGCTGCCCGCCCCCTGGCAGGGGCCTGGGCACAG---GCAGGGGCAGAGC-GGCC-GGCACAGCCTCACCTGCCACGCCAG--GGC-----------CAGGCCCTCGAGAGGC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e calJac3.chrUn_GL286223      42307 773 +    132061 I

a score=233539.000000
s hg38.chr6_GL000254v2_alt   917842 32 +   4827813 tctgcacttcccc------ctaggtactcctgtgcct---g
s panTro5.chr6             29880753 32 + 175400573 tctgcacttcccc------ctaggtactcctgtgcct---g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30115070 32 + 173848474 tctgcacttcccc------ctaggtactcctgtgcct---g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5914015 32 +   6154872 tctgcacttccca------ctaggtactcctgtgcct---g
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74628281 34 + 122973662 tctgcgcttcccc------c-aggtacttctgtgcctgaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30111856 35 + 172585720 tctgcacttcccc------ctaggtactcctgtgcttgaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29775580 35 - 170955103 tctgcacttcccc------ctaggtactcctgtgcttgaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2822287 35 -   2996164 tctgcacttcccc------ctaggtactcctgtgcttgaag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     572391 35 +    766320 tctgcacttcccc------ctaggtactcctgtgcttgaag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29029006 35 -  71996105 tctgcacttcccc------ctaggtactcctgtgcttgaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     218709 35 +    290775 tctgcacttcccc------ctaggtactcctgtgcttgaag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2664523 35 -   3067355 tctgcacttcccc------ctaggtactcctgtgcttgaag
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     252697 32 -   1771730 tctgcacttactc------ccaggttttcttgtgcctg---
i cebCap1.NW_016107755v1   C 0 I 4033
s aotNan1.NW_018509740v1     334041 32 -    457564 tctgcacttactc------ccaggtttttttgtgtctg---
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           141282 34 +  18854210 TCTGCACTTCCCT------CTAATTA-TTCTCTGCCTGAAG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            70407 38 +    102524 TCTGAGCTGCCCCAGGTAACCCGACACACCTGCACCTG---
i dasNov3.JH582591         C 0 I 7252
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26252732 146 +  26524999 I
e calJac3.chrUn_GL286223      42307 773 +    132061 I

a score=94731.000000
s hg38.chr6_GL000254v2_alt   917874 12 +   4827813 gagtgtgacatt
s panTro5.chr6             29880785 12 + 175400573 gagtgtgacatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30115102 12 + 173848474 gagtgtgacatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5914047 12 +   6154872 gagtgtgacatt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74628315 12 + 122973662 gagtgtgacatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30111891 12 + 172585720 gagtgtgacatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29775615 12 - 170955103 gagtgtgacatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2822322 12 -   2996164 gagtgtgacatt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     572426 12 +    766320 gagtgtgacatt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29029041 12 -  71996105 gagtgtgacatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     218744 12 +    290775 gagtgtgacatt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2664558 12 -   3067355 gagtgtggcatt
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     334073 12 -    457564 gagtgtgacatt
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           141316 12 +  18854210 GAGTGTGATTTT
i otoGar3.GL873550         C 0 I 619
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26252732 146 +  26524999 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I
e calJac3.chrUn_GL286223      42307 773 +    132061 I

a score=28392.000000
s hg38.chr6_GL000254v2_alt   917886 4 +   4827813 aaat
s panTro5.chr6             29880797 4 + 175400573 aaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30115114 4 + 173848474 aaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5914059 4 +   6154872 aaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74628327 4 + 122973662 aaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30111903 4 + 172585720 aaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29775627 4 - 170955103 aaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2822334 4 -   2996164 aaat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     572438 4 +    766320 aaat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29029053 4 -  71996105 aaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     218756 4 +    290775 aaat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2664570 4 -   3067355 aaat
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     334085 4 -    457564 aaat
i aotNan1.NW_018509740v1   C 0 I 283
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26252732 146 +  26524999 I
e otoGar3.GL873550           141328 619 +  18854210 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I
e calJac3.chrUn_GL286223      42307 773 +    132061 I

a score=28046.000000
s hg38.chr6_GL000254v2_alt   917890 12 +   4827813 t---------------aaaaaaaa-------------aaa
s panTro5.chr6             29880801 27 + 175400573 taaaaaaaaaaaaaaaaaaaaaaa-------------aaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30115118 25 + 173848474 t--taaaaaaaaaaaaaaaaaaaa-------------aaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5914063 20 +   6154872 t-------aaaaaaaaaaaaaaaa-------------aaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74628331 16 + 122973662 t-----------aaaaaaaaaaaa-------------aaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30111907 12 + 172585720 a---------------aaaaagaa-------------aaa
i rheMac8.chr4             C 0 I 11
s macFas5.chr4             29775631 12 - 170955103 a---------------aaaaagaa-------------aaa
i macFas5.chr4             C 0 I 11
s macNem1.NW_012011356v1    2822338 12 -   2996164 a---------------aaaaagaa-------------aaa
i macNem1.NW_012011356v1   C 0 I 1498
s cerAty1.NW_012002711v1     572442 12 +    766320 a---------------aaaaagaa-------------aag
i cerAty1.NW_012002711v1   C 0 I 11
s chlSab2.chr17            29029057 12 -  71996105 a---------------aaaaagaa-------------aaa
i chlSab2.chr17            C 0 I 10
s manLeu1.NW_012099233v1     218760 25 +    290775 a---------------aaaaagaaaagaaaagaaaagaaa
i manLeu1.NW_012099233v1   C 0 I 10
s colAng1.NW_012115566v1    2664574 12 -   3067355 a---------------aaaaagaa-------------aaa
i colAng1.NW_012115566v1   C 0 I 7
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26252732 146 +  26524999 I
e otoGar3.GL873550           141328 619 +  18854210 I
e aotNan1.NW_018509740v1     334089 283 -    457564 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I
e calJac3.chrUn_GL286223      42307 773 +    132061 I

a score=337716.000000
s hg38.chr6_GL000254v2_alt   917902 76 +   4827813 ggccgggcgcggtggctcacgcctgtaatcccaccattatgggaggccaaggcaggcggatcacgaggtcaggcga
s panTro5.chr6             29880828 76 + 175400573 ggccgggcgcggtggctcacgcctgtaagcccagcattttgggaggccaaggcaggcggatcacgaggtcaggcga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30115143 76 + 173848474 ggccgggcgcggtggctcacgcctgtaagcccagcattttgggaggccaaggcaggcggatcacgaggtcaggcga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5914083 76 +   6154872 tgccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcggatcacgaggtcaggcga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74628347 76 + 122973662 ggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacgaggtcaggcga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30111930 76 + 172585720 ggccacgcgcgttggctcacgcctgtaatcccagcactttgggagtccgaggtcggcggatcatgaggtcaggaga
i rheMac8.chr4             I 11 C 0
s macFas5.chr4             29775654 76 - 170955103 ggccacgcgcgttggctcacgcctgtaatcccagcactttgggagtccgaggtcggcggatcatgaggtcaggaga
i macFas5.chr4             I 11 C 0
s cerAty1.NW_012002711v1     572465 76 +    766320 ggccacgtgcgttggctcacgcctgtaatcccagcactttgggagtccgaggccggcggatcatgaggtcaggaga
i cerAty1.NW_012002711v1   I 11 C 0
s chlSab2.chr17            29029079 76 -  71996105 ggccacgcgcgttggctcacgcctgtaatcctagcactttgggagtccgaggccggcggatcatgaggtcaggaga
i chlSab2.chr17            I 10 C 0
s manLeu1.NW_012099233v1     218795 76 +    290775 ggccacgcgcgttggctcacgcctgtaatcccagcactttgggaggccgaggccggcggatcatgaggtcaggaga
i manLeu1.NW_012099233v1   I 10 T 3931
s colAng1.NW_012115566v1    2664593 76 -   3067355 ggccacccgcggtggctcacacctgtaatcccagcactttgggaggccgaggccggcggatcatgatgtcaggaga
i colAng1.NW_012115566v1   I 7 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26252732 146 +  26524999 I
e otoGar3.GL873550           141328 619 +  18854210 I
e aotNan1.NW_018509740v1     334089 283 -    457564 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I
e calJac3.chrUn_GL286223      42307 773 +    132061 I
e macNem1.NW_012011356v1    2822350 1498 -   2996164 I

a score=541333.000000
s hg38.chr6_GL000254v2_alt   917978 123 +   4827813 tcgagaccatcctggctaacacggtgaaaccccgtctccactaaaaatac---------aaaaaaattatctgggcatggtggcgagcgcctgtagtcccagctacttgggaggctgagacaggagaatggc
s panTro5.chr6             29880904 123 + 175400573 tcgagaccatcctggctaacacggtgaaaccccgtctccactaaaaatac---------aaaaaaattatctgggcatggtggcgagcgcctgtagtcccagctacttgggaggctgagacaggagaatggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30115219 123 + 173848474 tcgagaccatcctggctaacacggtgaaaccccgtctccactaaaaatac---------aaaaaaattatctgggcatggtggcgagcgcctgtagtcccagctacttgggaggctgagacaggagaatggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5914159 123 +   6154872 tcgagaccaccctggctaacacggtgaaatcccgtctccactaaaagtac---------aaaaaaattatctgagcatggtggcgggcgcctctagtcccagctacttgggaggctgagacaggagaatggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74628423 123 + 122973662 tccagaccatcctggctaacacggtgaaaccccgtctccactaaaaatac---------aaaaaaattatcccggcctggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30112006 132 + 172585720 tcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaaaaaaaaaaaattagccgggcatggtggcgggcgcctgtagtcccagctactccagaggctgaggcaggagaatggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29775730 132 - 170955103 tcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaaaaaaaaaaaattagccgggcatggtggcgggcgcctgtagtcccagctactccagaggctgaggcaggagaatggc
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     572541 128 +    766320 tcgaggccatcctggctaacacagtgaaacctcgtctctactaaaaacac----acacacaaaaaattagccgggcatggtggcgggcgcctgtagtcccagctactccagaggctgaggcaggagaatggc
i cerAty1.NW_012002711v1   C 0 I 781
s chlSab2.chr17            29029155 130 -  71996105 ttgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatac--caaaaaaaaaaaaattagccgggcatggtggcgggcgcctgtagtcccagctactccagaggctgaggcaggagaatggc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     214940 121 +    290775 tcgagaccaccctggccaacatggcgaaacccggtctctactaaaaatac-----------aaaaattagtcaggtgtggtggcaggtgcctgtaatcccagctactcgggaggctgaggcaggagaatggc
i manLeu1.NW_012099233v1   T 3931 C 0
s colAng1.NW_012115566v1    2664669 127 -   3067355 tcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatat-----caaaaaaaaaattagccaggcgtggtggcgggctcctgtagtcccagctactccagaggctgaggcaggagaatgtc
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26252732 146 +  26524999 I
e otoGar3.GL873550           141328 619 +  18854210 I
e aotNan1.NW_018509740v1     334089 283 -    457564 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I
e calJac3.chrUn_GL286223      42307 773 +    132061 I
e macNem1.NW_012011356v1    2822350 1498 -   2996164 I

a score=339088.000000
s hg38.chr6_GL000254v2_alt   918101 112 +   4827813 ttgaacccgggaggcggaggttgcagtgaaccgagattgcgccactgc-------actccagcctgggcgacagagcgagactccgtctcaaaaaaaaaa--------aaaaaaaaagaaaagaaaa
s panTro5.chr6             29881027 110 + 175400573 ttgaacccgggaggcggaggttgcagtgaaccgagattgcgccactgc-------actccagcctgggcgacagagtgagactccgtctc--aaaaaaag--------aaaagaaaagaaaagaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30115342 112 + 173848474 ttgaacccgggaggcggaggttgcagtgaaccgagattgcgccactgc-------actccagcctgggcgacagagtgagactccgtctacaaaaaaaga--------aaaagaaaaagaaaagaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5914282 110 +   6154872 ttgaacccgggaggcggagcttgcagtgaaccgagattgcgccactgc-------actccagcctgggcgacagagcgagactccatctc--aaaaaaaa--------aaaagaaaagaaaagaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74628546 106 + 122973662 ttgaacctgggaggcggagcttgcagtgaaccaagattgcgccactgc-------acttcagcctgggcgacagagcaagactccatctc------aaaa--------aaaaaaaaagaaaagaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30112138 110 + 172585720 ttgaaccc-agaggcggagcttgcagtgcgccgagattgcgccactgc-------actccaacctggacaacag---aagactccgtctcaaaaaaaaaaaa------aaaagaaaagaaaagaaaa
i rheMac8.chr4             C 0 I 982
s macFas5.chr4             29775862 116 - 170955103 ttgaaccc-agaggcggagcttgcagtgcgccgagattgcgccactgc-------actccaacctggacaacag---aagactccgtctcaaaaaaaaaaaaaaaaagaaaagaaaagaaaagaaaa
i macFas5.chr4             C 0 I 37
s chlSab2.chr17            29029285 115 -  71996105 ttgaaccc-agaggcggagcttgcagtgcactgagattgcgccactgc-------actccaacctgggcaacag---aagactccgtctcaaaaaaaaaaaa-aaaagaaaagaaaagaaaagaaaa
i chlSab2.chr17            C 0 I 46
s manLeu1.NW_012099233v1     215061 111 +    290775 ttgaaccc-cgaggtgaaggttgcagtgagccgagattatgctattgc-------actccagcctgggtgacagagcaagatttggtctcaaaaaaaaaa--------aaaagaaaagaaaagaaaa
i manLeu1.NW_012099233v1   C 0 I 23
s colAng1.NW_012115566v1    2664796 117 -   3067355 ttgaaccc-agaggcggagcttgcagtaggccgagattgtgccactgcactccaaactccaacctgggcaacag---aagactctgtctcaaaaaaaaagaa------aaaagaaaagaaaagaaaa
i colAng1.NW_012115566v1   C 0 I 45
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26252732 146 +  26524999 I
e otoGar3.GL873550           141328 619 +  18854210 I
e aotNan1.NW_018509740v1     334089 283 -    457564 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I
e calJac3.chrUn_GL286223      42307 773 +    132061 I
e cerAty1.NW_012002711v1     572669 781 +    766320 I
e macNem1.NW_012011356v1    2822350 1498 -   2996164 I

a score=127471.000000
s hg38.chr6_GL000254v2_alt   918213 42 +   4827813 aaac-cccacataataggttgacagtggaaccacagaaaaaag
s panTro5.chr6             29881137 42 + 175400573 gaaa-cccacataataggtcgacagtggaaccacagaaaaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30115454 41 + 173848474 aaaa-cccacataataggtcgacagtggaaccacag-aaaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5914392 43 +   6154872 aaaaccccacataataggttgacagtggaaccacagaaaaaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74628652 42 + 122973662 aaaa-cccacataataggttgacagtggaaccacagaaaaaag
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29776015 42 - 170955103 aaac-cccacataataggttgacagtggaaccacagaaaaaag
i macFas5.chr4             I 37 C 0
s chlSab2.chr17            29029446 42 -  71996105 aaac-cccacataataggttgacagtggaaccacagaaaaaag
i chlSab2.chr17            I 46 I 29
s manLeu1.NW_012099233v1     215195 42 +    290775 aaaC-CCCACATAATAGGTTGACAGTGGAACCACAGAAAAAAG
i manLeu1.NW_012099233v1   I 23 I 16
s colAng1.NW_012115566v1    2664958 42 -   3067355 aaaa-cccacataataggttgacagtggaaccacagagaaaag
i colAng1.NW_012115566v1   I 45 I 29
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26252732 146 +  26524999 I
e otoGar3.GL873550           141328 619 +  18854210 I
e aotNan1.NW_018509740v1     334089 283 -    457564 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I
e calJac3.chrUn_GL286223      42307 773 +    132061 I
e cerAty1.NW_012002711v1     572669 781 +    766320 I
e macNem1.NW_012011356v1    2822350 1498 -   2996164 I
e rheMac8.chr4             30112248 982 + 172585720 I

a score=412.000000
s hg38.chr6_GL000254v2_alt   918255 3 +   4827813 -gaa
s panTro5.chr6             29881179 3 + 175400573 -gaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30115495 3 + 173848474 -gaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5914435 3 +   6154872 -gaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74628694 3 + 122973662 -gaa
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29776057 3 - 170955103 AGA-
i macFas5.chr4             C 0 I 240
s manLeu1.NW_012099233v1     215253 3 +    290775 AGA-
i manLeu1.NW_012099233v1   I 16 I 1
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26252732 146 +  26524999 I
e otoGar3.GL873550           141328 619 +  18854210 I
e aotNan1.NW_018509740v1     334089 283 -    457564 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I
e calJac3.chrUn_GL286223      42307 773 +    132061 I
e colAng1.NW_012115566v1    2665000 29 -   3067355 I
e chlSab2.chr17            29029488 29 -  71996105 I
e cerAty1.NW_012002711v1     572669 781 +    766320 I
e macNem1.NW_012011356v1    2822350 1498 -   2996164 I
e rheMac8.chr4             30112248 982 + 172585720 I

a score=8440.000000
s hg38.chr6_GL000254v2_alt   918258 9 +   4827813 aaggttggg
s panTro5.chr6             29881182 9 + 175400573 aaggttggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30115498 9 + 173848474 aaggttggg
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01015250v1    5914438 9 +   6154872 aaggttGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74628697 9 + 122973662 aaggttggt
i nomLeu3.chr1a            C 0 I 1
s manLeu1.NW_012099233v1     215257 9 +    290775 AAGAAAAGG
i manLeu1.NW_012099233v1   I 1 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26252732 146 +  26524999 I
e otoGar3.GL873550           141328 619 +  18854210 I
e aotNan1.NW_018509740v1     334089 283 -    457564 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I
e calJac3.chrUn_GL286223      42307 773 +    132061 I
e colAng1.NW_012115566v1    2665000 29 -   3067355 I
e chlSab2.chr17            29029488 29 -  71996105 I
e cerAty1.NW_012002711v1     572669 781 +    766320 I
e macNem1.NW_012011356v1    2822350 1498 -   2996164 I
e macFas5.chr4             29776060 240 - 170955103 I
e rheMac8.chr4             30112248 982 + 172585720 I

a score=3483.000000
s hg38.chr6_GL000254v2_alt   918267 3 +   4827813 ttt
s panTro5.chr6             29881191 2 + 175400573 -tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30115508 3 + 173848474 ttt
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01015250v1    5914447 3 +   6154872 GTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74628707 3 + 122973662 ttt
i nomLeu3.chr1a            I 1 C 0
s chlSab2.chr17            29029517 3 -  71996105 ttt
i chlSab2.chr17            I 29 C 0
s manLeu1.NW_012099233v1     215266 3 +    290775 CTT
i manLeu1.NW_012099233v1   C 0 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26252732 146 +  26524999 I
e otoGar3.GL873550           141328 619 +  18854210 I
e aotNan1.NW_018509740v1     334089 283 -    457564 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I
e calJac3.chrUn_GL286223      42307 773 +    132061 I
e colAng1.NW_012115566v1    2665000 29 -   3067355 I
e cerAty1.NW_012002711v1     572669 781 +    766320 I
e macNem1.NW_012011356v1    2822350 1498 -   2996164 I
e macFas5.chr4             29776060 240 - 170955103 I
e rheMac8.chr4             30112248 982 + 172585720 I

a score=362908.000000
s hg38.chr6_GL000254v2_alt   918270 153 +   4827813 tttttctgctttttattttctattttattattttttaatagatttatttaactagagatggggtctcactatgttgtaaaggctggactcgagaccctgggcccgagcgatcctccaacctggtcctcccaaagtgatgggattacaggcgtg
s panTro5.chr6             29881193 153 + 175400573 tttttctgctttttattttctattttattattttttaatagatttatttaactagagatggggtctcactatgttgtaaaggctggactcgagaccctgggcccgagccatcctccaacctggtcctcccaaagtgatgggattacaggcgtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30115511 153 + 173848474 ttttcttgctttttattttctattttattattttttaatagatttatttaactagagatggggtctcactatgttgtaaaggctggactcgagaccctgggcccgagccatcctccaacctggtcctcccaaagtgatgggattacaggcgtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5914450 153 +   6154872 TTTTTCTGCTTTTTATTTTCTATTTTAttattttttaatagatttatttaactagagatggggtctcactatgtcgtaaaggctggactcgagaccctgggcccaagcgatcctccaacctggtcctcccaaagtgatgggattacaggcgtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74628710 153 + 122973662 tttttctgctttttattttctattttattattttttaatagatttatttaactagagatgcggtctcactatgttgtaaaggctggactcgagcccctgggcccgagcaatcctccaacctggtcctcccaaagtgatgggattacaggcgtg
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            29029520 153 -  71996105 tttttctgctttttattttctattttattatattttaatagatttatttaattagagatggggtctcattatgttgtccaggctgtacttgagctcctgggttcaagtgatcctccaacctggtcctcccaaagtgatgggattacaggcatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     215269 153 +    290775 TTTTTCTGCTTTTTATTTTCTACTTTATTATATTTTAATAGAtttatttaattagagatggggtctcactatgttgtccaggctgtactcgagcccctgggttcaagtgatcctccaacctggtcctcccaaagtgatgggattacaggcatg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2665029 153 -   3067355 ttttcctgctttttattttctattttattatattttaatagatttatttaactagagatggggtctcactatgttgtccaggctgtactcgagcctctgggttcaagtgatcctctaacctggtcctcccaaagtgatgggattataggcacg
i colAng1.NW_012115566v1   I 29 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26252732 146 +  26524999 I
e otoGar3.GL873550           141328 619 +  18854210 I
e aotNan1.NW_018509740v1     334089 283 -    457564 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I
e calJac3.chrUn_GL286223      42307 773 +    132061 I
e cerAty1.NW_012002711v1     572669 781 +    766320 I
e macNem1.NW_012011356v1    2822350 1498 -   2996164 I
e macFas5.chr4             29776060 240 - 170955103 I
e rheMac8.chr4             30112248 982 + 172585720 I

a score=174405.000000
s hg38.chr6_GL000254v2_alt   918423 64 +   4827813 agccactgcacctggtcttttcctgctattaaacaaggag-ctccatagtttcattttgc------ccctc
s panTro5.chr6             29881346 64 + 175400573 agccactgcacctggtcttttcctgctattaaacaaggag-ctccatagtttcattttgc------ccctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30115664 64 + 173848474 agccactgcacctggtcttttcctgctattaaacaaggag-ctccatagtttcattttgc------ccctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5914603 64 +   6154872 agccactgcacctggttttttcctgctattaaacaaggag-ctccatagtttcattttgc------ccctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74628863 64 + 122973662 agccactgcacctggccttttcctgctattaaacaaggag-gtccatagtttcattttgc------ccctc
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            29029673 64 -  71996105 agacactgcgcctggccttttcctgctattaaacaaggag-ctccataatttcattttgc------ccctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     215422 64 +    290775 acacactgcacctggccttttcctgctattaaacaaggag-ctccatagtttcattttgc------ccctc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2665182 64 -   3067355 agacactgcacttggccttttcctgctattgaacaaggag-ctccatagtttcattttgc------ccctc
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           141947 67 +  18854210 aggcactgccctt----ttttgctgccttttaataaggggcccccgtagctttattttgcagtgggccctc
i otoGar3.GL873550         I 619 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26252732 146 +  26524999 I
e aotNan1.NW_018509740v1     334089 283 -    457564 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I
e calJac3.chrUn_GL286223      42307 773 +    132061 I
e cerAty1.NW_012002711v1     572669 781 +    766320 I
e macNem1.NW_012011356v1    2822350 1498 -   2996164 I
e macFas5.chr4             29776060 240 - 170955103 I
e rheMac8.chr4             30112248 982 + 172585720 I

a score=117840.000000
s hg38.chr6_GL000254v2_alt   918487 33 +   4827813 aaaatatgtagctggccttAGTAGACTGATATT
s panTro5.chr6             29881410 33 + 175400573 aaaatatgtagctggccttAGTAGACTGATATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30115728 33 + 173848474 aaaatatgtagctggccttAGTAGACTGATATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5914667 33 +   6154872 aaaatatgtagctggccttAGTAGACTGATATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74628927 33 + 122973662 aaaatatgtagctggccttAGTAGGCTGATATT
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            29029737 33 -  71996105 aaaatatatggctggccttAGTAGACTGATATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     215486 33 +    290775 aaaatatatagctggccttAGTAGACTGATATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2665246 33 -   3067355 aaaatatgtagatggccttAGTAGACTGATATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      43080 33 +    132061 aaaaaaaGGAGCTGACCTTAGTAGACTGATATT
i calJac3.chrUn_GL286223   I 773 C 0
s otoGar3.GL873550           142014 33 +  18854210 aaattatatatctagccctAGGAGACTGATATT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26252732 146 +  26524999 I
e aotNan1.NW_018509740v1     334089 283 -    457564 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I
e cerAty1.NW_012002711v1     572669 781 +    766320 I
e macNem1.NW_012011356v1    2822350 1498 -   2996164 I
e macFas5.chr4             29776060 240 - 170955103 I
e rheMac8.chr4             30112248 982 + 172585720 I

a score=23427.000000
s hg38.chr6_GL000254v2_alt   918520 6 +   4827813 CATTGC
s panTro5.chr6             29881443 6 + 175400573 CATTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30115761 6 + 173848474 CATTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5914700 6 +   6154872 CATTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74628960 6 + 122973662 CATTGC
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29776300 6 - 170955103 CACTGA
i macFas5.chr4             I 240 C 0
s chlSab2.chr17            29029770 6 -  71996105 CATTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     215519 6 +    290775 CATTGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2665279 6 -   3067355 CATTGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      43113 6 +    132061 CATTGC
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           142047 6 +  18854210 CATTGT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26252732 146 +  26524999 I
e aotNan1.NW_018509740v1     334089 283 -    457564 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I
e cerAty1.NW_012002711v1     572669 781 +    766320 I
e macNem1.NW_012011356v1    2822350 1498 -   2996164 I
e rheMac8.chr4             30112248 982 + 172585720 I

a score=672242.000000
s hg38.chr6_GL000254v2_alt   918526 111 +   4827813 CAAATTATATGTAAGAGCAAAAAGGTTGAAAATGATGGCCTGACATTGATCAATTTGTGCCTTTAGGTAACATATAACTGTAATATAACTGCAATACAactagaatataac
s panTro5.chr6             29881449 111 + 175400573 CAAATTATATGTAAGAGCAAAAAGGTTGAAAATGATGGCCTGACATTGATCAATTTGTGCCTTTAGGTAACATATAACTGTAATATAACTGCAATACAactagaatataac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30115767 111 + 173848474 CAAATTATATGTAAGAGCAAAAAGGTTGAAAATGATGGCCTGACATTGATCAATTTGTGCCTTTAGGTAACATATAACTGTAATATAACTGCAATACAactagaatataac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5914706 111 +   6154872 CAAATTATATGTAAGAGCAAAAAGGTTGAAAATAATGGCCTGACATTGATCAATTTGTGCCTTTAGGTAACATATAACTGTAATATAACTGCAATACAactagaatataac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74628966 111 + 122973662 CAAATTATATGTAAGAGCAAAAAGGTTGAAAATGATGGCCTGACATTGATCAATTTGTGCCTTTAGGTAACATATAACTGGAATAGAACTGCAATACAactagaatataac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30113230 111 + 172585720 CAAATTATATGTAAGAACAAAAAGGTTGAAAATGATGGCCTGACATGTATCTATTTGTGCCTTTAGGTAACatataactggaatataactgcagtacaactggaatataag
i rheMac8.chr4             I 982 C 0
s macFas5.chr4             29776306 111 - 170955103 CAAATTATATGTAAGAACAAAAAGGTTGAAAATGATGGCCTGACATGTATCTATTTGTGCCTTTAGGTAACatataactggaatataactgcagtacaactggaatataag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2823848 111 -   2996164 CAAATTATATGTAAGAACAAAAAGGTTGAAAATGATGGCCTGACATGTATCTATTTGTGCCTTTAGGTAACatataactggaatataactgcagtacaactggaatataag
i macNem1.NW_012011356v1   I 1498 C 0
s chlSab2.chr17            29029776 111 -  71996105 CAAATTATATGTAAGAACAAAAAGGTTGAAAATGATGGCCTGACATGTATCAATTTGTGCCTTTAGGTAACatataactggaatataactgcaatacaactggaatgtaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     215525 111 +    290775 CAAATTATATGTAAGAACAAAAAGGTTGAAAATGATGGCCTGACATGTATCAATTTGTGCCTTTAGGTAACatataactggaatataactgcaatactactggaatataag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2665285 111 -   3067355 CAAATTATATGTAAGAACAAAAAGGTTGAAAATGATGGCCTGACATGTATCAATTTGTGCCTTTAGGTAACatataactggaatataactgcaatacaactggaatataag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      43119 104 +    132061 TAAATTACATGTAAAAGTGAAAAGGTTGAAAATGATGCCCTCACATTTATCAATTTGTGCCTTTAG-------CTAACTGGAATATAGCTGCAATACAACTAGAATATATA
i calJac3.chrUn_GL286223   C 0 I 2
s otoGar3.GL873550           142053 106 +  18854210 CCTACTATATGTAA---TGAAAAGGTTGAAAATGATGACCTGATATTCATTGATTTGTACCCTTAGGTAAC--ATAACTGGAATATAGCAGCAATACAACTGAAATACAAC
i otoGar3.GL873550         C 0 I 2
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26252732 146 +  26524999 I
e aotNan1.NW_018509740v1     334089 283 -    457564 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I
e cerAty1.NW_012002711v1     572669 781 +    766320 I

a score=71820.000000
s hg38.chr6_GL000254v2_alt   918637 9 +   4827813 tcataaagg
s panTro5.chr6             29881560 9 + 175400573 tcataaagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30115878 9 + 173848474 tcataaagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5914817 9 +   6154872 tcataaagg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74629077 9 + 122973662 tcatgaagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30113341 9 + 172585720 tcatgaagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29776417 9 - 170955103 tcatgaagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2823959 9 -   2996164 tcatgaagg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     573450 9 +    766320 TCATGAAGG
i cerAty1.NW_012002711v1   I 781 C 0
s chlSab2.chr17            29029887 9 -  71996105 tcatgaagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     215636 9 +    290775 tcatgaagg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2665396 9 -   3067355 tcatgaagg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      43225 9 +    132061 TCATGAAGG
i calJac3.chrUn_GL286223   I 2 C 0
s otoGar3.GL873550           142161 9 +  18854210 TCATAAAGG
i otoGar3.GL873550         I 2 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e canFam3.chr35            26252732 146 +  26524999 I
e aotNan1.NW_018509740v1     334089 283 -    457564 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I

a score=622669.000000
s hg38.chr6_GL000254v2_alt   918646 82 +   4827813 caagaatcttgtctgccttgctgaaagttttataatcagggcctaatataaagtatgacaca----tagcacttgcttttaaa--tat
s panTro5.chr6             29881569 82 + 175400573 caagaatcttgtctgccttgctgaaagttttataatcagggcctaatataaagtatgacaca----tagcacttgcttttaaa--tat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30115887 82 + 173848474 caagaatcttgtctgccttgctgaaagttttataatcagggcctaatataaagtatgacaca----tagcactttcttttaaa--tat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5914826 82 +   6154872 caagaatcttgtctgccttgctgaaagttttataatcagggcctaatataaagtatgacaca----tagcacttgcttttaca--tat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74629086 82 + 122973662 caagagtcttgtctgtcttgctgaaacttttataatcagggcctaatataaagtatgacaca----tagcacttgcttttaaa--tat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30113350 82 + 172585720 caagaatcttgtctgtcttgcttaaactcttataatcagggcctaatataaagtatgacaca----tagaacttgcttttaaa--tat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29776426 82 - 170955103 caagaatcttgtctgtcttgcttaaactcttataatcagggcctaatataaagtatgacaca----tagcacttgcttttaaa--tat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2823968 82 -   2996164 caagaatcttgtctgtcttgcttaaactcttataatcagggcctaatataaagtatgacaca----tagcacttgcttttaaa--tat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     573459 80 +    766320 CAAGAATCTTGTCTGTCTTGC--GAACTCTTATAATCAGGGCCGAATATAAAGTA-GACACA-----AGCACTTGCTTTTAAAATTAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29029896 82 -  71996105 caagaatcttgtctgtcttgcttaaactcttataatcagggcctaatataaagtatgacaca----tagcacttgcttttaaa--tat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     215645 82 +    290775 caagaatcttgtctgtcttgctgaaactcttataatcagggcctaatataaagtatgacaca----tagcacttgcttttaaa--tat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2665405 82 -   3067355 caagaatcttgtctgtcttgctgaaactcttataatcagggcctaatataaagtatgacaca----tagcacttgcttttaaa--tat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      43234 67 +    132061 CAAGAATCC---------------ATCTTTTATAATCAGGGCCTAATATAAAGTATGACACA----TAGCATTTGCATTTAAA--TAT
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           142170 86 +  18854210 TAAGAACCTTGTCTTTCTTGCTAGAATTTTTATAATTAGAGTCTAATATAAAGCGTGACACACACATAGCATTTGCTGTTAAA--TAT
i otoGar3.GL873550         C 0 I 715
s canFam3.chr35            26252878 81 +  26524999 CAAGAACCT-GTTTGTCTTGCTGAAACTGTTATTATCAGAGCCTAATACAAAGCTTGACACT----TAAGATTTTCTATGaaa--tat
i canFam3.chr35            I 146 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e aotNan1.NW_018509740v1     334089 283 -    457564 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I

a score=712845.000000
s hg38.chr6_GL000254v2_alt   918728 94 +   4827813 gtattgattt--aaattaatTGAGTACATTTTTGCTTCATCCTAGT-AAAAATAGGTATTTaa-aaaactgaaacagtctaaatgtcttgggatgcta
s panTro5.chr6             29881651 94 + 175400573 gtattgattt--aaattaatTGAGTACATTTTTGCTTCATCCTAGT-AAAAATAGATATTTaa-aaaactgaaacagtctaaatgtcttgggatgcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30115969 94 + 173848474 gtattgattt--aaattaatTGAGTACATTTTTGCTTCATCCTAGT-AAAAATAGATATTTaa-aaaactgaaacagtctaaatgtcttgggatgcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5914908 94 +   6154872 gtattgactt--aaattaatTGAGTACATTTTTGCTTCAACCTAGT-AAAAATAGATATTTaa-aaaactgaaacagtctaaatgtcttgggaagcta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74629168 94 + 122973662 gtattgattt--aaattaatTGAGTACATTTTTGCTTCAACCTAGT-AAAAATAGATATTTaa-aaaactgaaacagtctaaatgtcttgtgaagcta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30113432 94 + 172585720 gtattgaTTT--AAGTTAATTGAGTACATTTTTGCTTCAACCTAGT-AAAAATAGATATTTaa-aaaactgaaacagcctaaatgtcttgggaagcta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29776508 94 - 170955103 gtattgaTTT--AAGTTAATTGAGTACATTTTTGCTTCAACCTAGT-AAAAATAGATATTTaa-aaaactgaaacagcctaaatgtcttgggaagcta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2824050 94 -   2996164 gtattgaTTT--AAGTTAATTGAGTACATTTTTGCTTCAACCTAGT-AAAAATAGATATTTaa-aaaactgaaacagcctaaatgtcttgggaagcta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     573539 92 +    766320 GTATTGAGTTTAGAGTTAATTGATTACA---TTGCTTCAACCGAGTAAAAAATAGATATTTaa-aaattgaaaacagcctaaatg--ctgggaagcta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29029978 94 -  71996105 gtattgaTTT--AAGTTAATTGAGTACATTTTTGCTTCAACCTAGT-AAAAACAGATATTTaa-aaaactgaaacagcctaaatgtcttgggaagcta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     215727 94 +    290775 gtattgaTTT--AAGTTAATTGAATACATTTTTGCTTCAACCTAGT-AAAAATAGATATTTaa-aaaattgaaacagcctaaatgtcttgggaagcta
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2665487 94 -   3067355 gtattgaTTT--AAGTTAATTGAATACATTTTTGCTTAAACCTAGT-AAAAAAAGATATTTaa-aaaactaaaacagcctaaatgtcttaggaagcta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      43301 93 +    132061 GTATTGATTT--AAATTAATTGAGTACA-TTTCGCTTCAACCTAGT-AAAAATAGATATTcaa-aaaactgaaacagcctaaatgtcttgggaagcta
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           142971 94 +  18854210 TTACTAATTT--AAATTAATTGAATACATTCTTGCTTCTACCTAAT-ATAAAGAGATATTTTa-aaaattgaaacagcctaaatatcttgtgaaacta
i otoGar3.GL873550         I 715 C 0
s canFam3.chr35            26252959 90 +  26524999 ttattatttt--aaattaatta---acatttttatttaaGTC-AGT--AAAATAGACACTtaacaaaattgaaacaacctaaatgttattggaaacta
i canFam3.chr35            C 0 I 176
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e aotNan1.NW_018509740v1     334089 283 -    457564 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I

a score=645699.000000
s hg38.chr6_GL000254v2_alt   918822  90 +   4827813 cttaa-----a-----------------ta-----actatattatattcatcc-aataaaatattgta-agctgtttaaaaataacaaggatgttctttaggtactgataaggaaagag
s panTro5.chr6             29881745  90 + 175400573 cttaa-----a-----------------ta-----actatattatattcatcc-aataaaatattgta-agctgtttaaaaataacaaggatgttctttaggtactgataaggaaagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116063  90 + 173848474 cttaa-----a-----------------ta-----actatattatattcatcc-aataaaatattgta-agctgtttaaaaataacaaggatgttctttaggtactgataaggaaagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915002  89 +   6154872 cttaa-----a-----------------ta-----actatattatattcatcc-aataaaatattgta-agctgtttaaaaataacaaggat-ttctttaggtactgataaggaaagag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74629262  90 + 122973662 cttaa-----a-----------------ta-----actatattatattcagcc-aataaaatattgta-agctgtataaaaataacaaggatgttctttaggtactgataaggaaagag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30113526  90 + 172585720 cttaa-----a-----------------ta-----actatattatattcatcc-aataaaatattgta-agctgtataaaaataacaaggatgttctttaggtactgataaggaaagag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29776602  90 - 170955103 cttaa-----a-----------------ta-----actatattatattcatcc-aataaaatattgta-agctgtataaaaataacaaggatgttctttaggtactgataaggaaagag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2824144  90 -   2996164 cttaa-----a-----------------ta-----actatattatattcatcc-aataaaatattgta-agctgtataaaaataacaaggatgttctttaggtactgataaggaaagag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     573631 100 +    766320 cttaataacta-----------------tagttatattatattatattcatcc-aataaaatattgta-agctgtataaaaataacaaggatgttctttaggtactgataaggaaagag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29030072  90 -  71996105 cttaa-----a-----------------ta-----actatatgatattcatcc-aataaaatattgta-agctgtataaaaataacaagggtgttctttaggtactgataaggaaagag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     215821  90 +    290775 cttaa-----a-----------------ta-----actatattatattcatcc-aataaaatattgta-agctgtataaaaataacaaggatgttctttaggtactgataaggaaagag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2665581  90 -   3067355 cttaa-----a-----------------ta-----actatattatattcatcc-aataaaatattgta-agctgtataaaaataacaaggatgttctttaggtactgataaggaaagag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      43394  84 +    132061 cttaa-----c-----------------ga---------tattatattcgtgc-aataaaatattgta-agctgtataaaaataac--gggttttatttaggtactaataaggaaaaaa
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           143065  83 +  18854210 gttaa-----a-----------------aa-----cgtgtaatatgttcatgc-aataaaacatttgg-agctataaaataagaat-------ttttttaggtactgataaagaaagat
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26253225 108 +  26524999 tttaa-----aaagaaaaaaaaggaaacta-----atttcgatacattcaagcaaaaaaaatactgtgtagctgtatttaaa-aaggagtatgttctttaggtaccaatattgagaggt
i canFam3.chr35            I 176 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e aotNan1.NW_018509740v1     334089 283 -    457564 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I

a score=1410388.000000
s hg38.chr6_GL000254v2_alt   918912 176 +   4827813 cttcaagataaattgttaCCATTTATGTA--------------AAACAGGTGGGAGAAGGGA-----GAGGGAGGGAT-----------------------GTGTGAGCGCTACTTGCA--------------------GTACTCACA-------------GG-CAGTGACTT--TCGTGGAGCGCCCTCTAGTGGTATATATATACAA--ACGGAAGGATTTAGAGAAAATACAGATCGGC----------------TTTAGCTGGCTGAG
s panTro5.chr6             29881835 174 + 175400573 cttcaagataaattgttaCCATTTATGTA--------------AAACAGGTGGGAGAAGGGA-----GAGGGCGGGAT-----------------------GTGTGAGCGCTACTTGCA--------------------GTACTCACA-------------GG-CAGTGACTT--TCGTGGAGCGCCCTCTAGTGG--TATATATACAA--ACGGAAGGATTTAGAGAAAATACAGATCGGC----------------TTTAGCTGGCTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116153 174 + 173848474 cttcaagataaattgttaCCATTTATGTA--------------AAACAGGTGGGAGAAGGGA-----GAGGGCGGGAT-----------------------GTGTGAGCGCTACTTGCA--------------------GTACTCACA-------------GG-CAGTGACTT--TCGTGGAGCGCCCTCTAGTGG--TATATATACAA--ACGGAAGGATTTAGAGAAAATACAGATCGGC----------------TTTAGCTGGCTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915091 174 +   6154872 cttcaagataaattgttaCCATTTATGTA--------------AAACAGGTGGGAGGAGGGA-----GAGGGAGGGAT-----------------------GTGTGAGCGCTACTTGCA--------------------GTACTCACA-------------GG-CAGTGACTT--TCATGGAGCGCCCTCTAGTGG--TATATATACAA--ACGGAAGGATTTAGAGAAAATACAGATCGGC----------------TTTGGCTGGCTGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74629352 174 + 122973662 cttcaagataaattgttaCCATTTATGTA--------------AAACAGGTGGGAGGAGGGA-----GAGGGAGGGAT-----------------------GTGTGAGCGCTACTTGCA--------------------GTCCTCACA-------------GG-CAGTGACTT--TCATGGAGCGCCCTCTCGTGG--TATATATACAA--ATGGAAGGATTTAGAGAAAATACAGATTGGC----------------TTTGGCTGGCTGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30113616 177 + 172585720 cctcaagataaattgttaCCATTTATGTA--------------AAACAGGTGGGAGGAGGGA-----GACGGAGGGAT-----------------------GTGTGAGCGCTACTTTCA--------------------GCCCTCACA-------------GGTCAGTGACTT--TCATGGAGCGCCCTCTAGTGG--CATATATGCAAATATGGAAGAATTTAGAGAAAATACAGATTGGC----------------TTTGGATGGCTGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29776692 177 - 170955103 cttcaagataaattgttaCCATTTATGTA--------------AAACAGGTGGGAGGAGGGA-----GACGGAGGGAT-----------------------GTGTGAGCGCTACTTTCA--------------------GCCCTCACA-------------GGTCAGTGACTT--TCATGGAGCGCCCTCTAGTGG--CATATATGCAAATATGGAAGAATTTAGAGAAAATACAGATTGGC----------------TTTGGATGGCTGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2824234 177 -   2996164 cttcaagataaattgttaCCATTTATGTA--------------AAACAGGTGGGAGGAGGGA-----GACGGAGGGAT-----------------------GTGTGAGCGCTACTTTCA--------------------GCCCTCACA-------------GGTCAGTGACTT--TCATGGAGCGCCCTCTAGTGG--CATATATGCAAATATGGAAGAATTTAGAGAAAATACAGATTGGC----------------TTTGGATGGCTGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     573731 177 +    766320 cttcaagataaattgttaCCATTTATGTA--------------AAACAGGTGGGAGGAGGGA-----GATGGAGGGAT-----------------------GTGTGAGCGCTACTTTCA--------------------GCCCTCACA-------------GGTCAGTGACTT--TCATGGAGCGCCCTCTAGTGG--CATATATACAAATATGGAAGCATTTAGAGAAAATACAGATTGGC----------------TTTGGATGGCTGAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29030162 177 -  71996105 cttcaagataaattgttaCCATTTATGTA--------------AAACAGGTGGGAGGAGGGA-----GACGGAGGGAT-----------------------GTGTGAGCGCTACTTTCA--------------------GCCCTCACA-------------GGTCAGTGACTT--TCATGGAGCGCCCTCTAGTGG--CATATATACAAATACGGAAGAATTTAGAGAAAATACAGTTTAGT----------------TTTGTATGGCTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     215911 177 +    290775 cttcaagataaattgttaCCATTTATGTA--------------AAACAGGTGGGAGGAGGGA-----GATGGAGGGAT-----------------------GTGTGAGCGCTACTTTCA--------------------GCCCTCACA-------------GGTCAGTGACTT--TCATGGAGCGCCCTCTAGTGG--CATATATACAAATATGGAAGAATTTAGAGAAAATACAGATTGGC----------------TTTGGATGGCTGAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2665671 177 -   3067355 cttcaagataaattgttaCCATTTATGTA--------------AAACAGGTAGGAGGAGGGA-----GACGGAGGGAT-----------------------GTGTGAGTGCTACTTTCA--------------------GCCCTCACA-------------GGTCAGTGACTT--TCATGGAGCGCCCTCTAGTGG--CATATATGCAAATATGGAAGAATTTAGAGAAAATACAGATTGGC----------------TTTGGATGGCTGAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      43478 176 +    132061 tgtcaagataaattgttaCCATTTACGTA--------------AAACAGGTGGGAGGAGGGA-----GAAGGAAGGAT-----------------------GTGTGAGTGCTACCTTCA--------------------GTCCTCACA-------------GG-CAGTGACTT--TTGTGGATCGCCCTCTAGTGG--CATATATACAAATATGGAAGGATTTAGAGAAAATACAGATTGGC----------------TTTGAATGCCTGAG
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     334372 176 -    457564 CTTCAAGATAAATTGTTACCATTTATGTA--------------AAACAGGTGGGAGGAGGGA-----GAGGGAAGGAT-----------------------GTGTGAGCGCTACCTTCA--------------------GTCCTCACA-------------GG-CAGTGACTT--TCGTGGGGCGCCCTCTAGTGG--CACATATACAAATATGGAAGGATTTAGAGAAAATACAGATTGGC----------------TTTGAATGGCTGAG
i aotNan1.NW_018509740v1   I 283 C 0
s otoGar3.GL873550           143148 165 +  18854210 ctccaagataaattgttaC----------------------------------GGGGGTGGC-----AGGGGAGGGAT-----------------------GCTTAACCGCTATCTTTA--------------------GTCCTTGTA-------------GG-CAGTGACTTTCTCCTGGAGCGCCCTCTGGTGG--CAC--ATGCTG--GTGTAAGGA-----AGAAAATAGAGGTTGGTggctcggcgcctatagctcaaccggctaag
i otoGar3.GL873550         C 0 I 140
s canFam3.chr35            26253333 244 +  26524999 ctctaagttaaattattaCCATTTATGGGGTgcccggctggctgaatcggtggaacacgtgacccttgatctgggggttgtgagttcaagccccatgttgggtgTAAGGCTTACTTACAAAAAATGTATCACCATTTATGTTTTTAAAAATGCAAGGTGAGGG-GAGTGCTTT-CTTCTGGAGCCTCCTCTAGTGG--CACATGT------GTGGAAGGAGTCAGAGAAAACACA--TTGAC----------------TCTGGATAACTGGG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I

a score=339108.000000
s hg38.chr6_GL000254v2_alt   919088 64 +   4827813 -ATTTATTTTCAAAGCATGTTACTTTATAAGAATCAATTTTTATTT-AAAAAAtttttttgagata
s panTro5.chr6             29882009 64 + 175400573 -ATTTATTTTCAAAGCATGTTACTTTATAAGAATCAATTTTTATTT-AAAAAAtttttttgagata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116327 64 + 173848474 -ATTTATTTTCAAAGCATGTTACTTTATAAGAATCAATTTTTATTT-AAAAAAAttttttgagata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915265 61 +   6154872 -----ATTTTCAAAGCATGTTACTTTATAAGAATCCATTTTTATTTAAAAAAAtttttttgagata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74629526 60 + 122973662 -A-----TTTCAAAGTATGCTACTTTATAAGAATCTATTTTTATTTAAAAAAttttttttgagata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30113793 60 + 172585720 -----ATTTTCAAAGTATGTTACTTTATAAGAATCAAtttttactt-ttttaatgtttttgagata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29776869 60 - 170955103 -----ATTTTCAAAGTATGTTACTTTATAAGAATCAAtttttactt-ttttaatgtttttgagata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2824411 60 -   2996164 -----ATTTTCAAAGTATGTTACTTTACGAGAATCAAtttttactt-ttttaatgtttttgagata
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     573908 60 +    766320 -----ATTTTCAAAGTATGTTACTTTATAAGAATCAAtttttactt-ttttaatgtttttgagata
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29030339 55 -  71996105 -----ATTTTCAAAGTATGTTAC-----AAGAATCAAtttttactt-ttttaatgtttttgagata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     216088 60 +    290775 -----ATTTTCAAAGTATGTTACTTTATAAGAATCAAtttttactt-ttttaatgtttttgagata
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2665848 60 -   3067355 -----ATTTTCAAAGTATGTTACTTTACAAGAATCAAtttttactt-ttttaatgtttttgagata
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      43654 60 +    132061 -----ATTTTCAAAGTATGCTACTTTATAAGAATCAAtttttattg-ttttaatttttttgagata
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     334548 58 -    457564 -----ATTTTCAAAG--TGTTACTTAATAAGAATCAAtttttattg-ttttaatttttttgagata
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26253577 29 +  26524999 AGGGAGGCTTTCAGGTGCCTTATTTTATA-------------------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e otoGar3.GL873550           143313 140 +  18854210 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I

a score=692771.000000
s hg38.chr6_GL000254v2_alt   919152 105 +   4827813 gggtctcactctgtcgcacaggttggag--tgc----agcagcacgatcagtgctcactgc----------------agcctctctctct-------------------------------tgggct-----c---aaCAGGT-GCATGTCACCACGTCCAGCTAAC
s panTro5.chr6             29882073 105 + 175400573 gggtctcactctgtcgcacaggttggag--tgc----agcagcacgatcagtgctcactgc----------------agcctctctctct-------------------------------tgggct-----c---aaCAGGT-GCATGTCACCATGTCCAGCTAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116391 105 + 173848474 gggtctcactctgtcgcacaggttggag--tgc----agcagcacgatcagtgctcactgc----------------agcctctctctct-------------------------------tgggct-----c---aaCAGGT-GCATGTCACCATGTCCAGCTAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915326 105 +   6154872 gggtctcactctgtcgcacaggttggag--tgc----agcagcacgatcagtgctcactgc----------------agcctctctctct-------------------------------tgggct-----c---aaCAGGT-GCATGTCACCACGCCCAGCTAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74629586 103 + 122973662 gggtctcactctgtcgcacaggttggag--tgc----agcagcatgatcagtgctcactgc----------------agcctctctctc---------------------------------gggct-----c---aaCAGAT-GCATGTCACCACGCCCAGCTAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30113853 105 + 172585720 gggtctcactctgtcgcacaggctggag--tgc----agcagcatgatcagtgctcactgc----------------agcctctctctca-------------------------------tgggct-----c---aaCAAGT-GCATGTCACCATGCCTGGCTTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29776929 105 - 170955103 gggtctcactctgtcgcacaggctggag--tgc----agcagcatgatcagtgctcactgc----------------agcctctctctca-------------------------------tgggct-----c---aaCAAGT-GCATGTCACCATGCCTGGCTTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2824471 105 -   2996164 gggtctcactctgtcgcacaggctggag--tgc----agcagcatgatcagtgctcactgc----------------agcctctctctca-------------------------------tgggct-----c---aaCAAGT-GCATGTCACCATGCCTGGCTTAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     573968 105 +    766320 gggtctcactctgtcgcacaggctggag--tgc----agcagcatgatcagtgctcactgc----------------agcctctctctca-------------------------------tgggct-----c---aaCAGGT-GCATGTCACCATGCCTGGCTTAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29030394 105 -  71996105 gggtctcactctgtcgcacaggctggag--tgc----agcagcatgatcagtgctcactgc----------------agcctctctctca-------------------------------tgggct-----c---aaCAGGT-GTATGTCACCATGCCCGACTTAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     216148 105 +    290775 gggtctcactctgtcgcacaggctggag--tgc----agcagcatgatcagtgctcactgc----------------agcctctctctca-------------------------------tgagct-----g---aaCAGGT-GCATGTCACCATGCCCGGCTTAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2665908 106 -   3067355 ggatctcactctgtcgcacaggctggag--tgc----agcagcatgatcagtgctcactgc----------------agcctctctctca-------------------------------tgggat-----c---aaCAGGTAGCATGTCACCATGCCCGGCTTAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      43714 105 +    132061 cggtctcactctgtcgcacaggctggag--tgc----agtggcacaatgaaagttcactgc----------------agcctctctctcc-------------------------------tgggct-----c---aaCAGGC-CCATGTCAGCATGCCCAGCTAAG
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     334606 105 -    457564 gggtctcactctgtcgcacaggctggag--tgc----agtggcacaatcagagctcacagc----------------agcctctctctcc-------------------------------tgggct-----c---aaCAGGC-ATATGTCACCATGCTCAGCTAAG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           143453 161 +  18854210 gagactcgcttgagcccaggagttggaggttgctgtgagctgtaatgccacagcactttgcccagggggacagcttgaggctctgtctccaaaaaaaaaaaaaaaaaaaAGAAAATAGAGGTTGGCTTTGGAC---CGCTGGA-ACATTTT--CAAGGTATATTAAG
i otoGar3.GL873550         I 140 C 0
s canFam3.chr35            26253606  33 +  26524999 -------------------------------------------------------------------------------------CCTTT-------------------------------TGGATT-----TTGAAACAAAA-CCATATGAAAG------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     632970 3831 +    730504 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I

a score=127055.000000
s hg38.chr6_GL000254v2_alt   919257 11 +   4827813 AATCAATTTTC
s panTro5.chr6             29882178 11 + 175400573 AATCAATTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116496 11 + 173848474 AATCAATTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915431 11 +   6154872 AATCAATTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74629689 11 + 122973662 AATCAATTTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30113958 11 + 172585720 AATCAATTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777034 11 - 170955103 AATCAATTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2824576 11 -   2996164 AATCAATTTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574073 11 +    766320 AATCAATTTTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29030499 11 -  71996105 AATCAATTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     216253 11 +    290775 AATCAATTTTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2666014 11 -   3067355 AATCAATTTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      43819 11 +    132061 AATCAATTTTC
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     334711 11 -    457564 AATCAATTTTC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     636801 11 +    730504 AATCAATTTTT
i proCoq1.NW_012152574v1   I 3831 C 0
s otoGar3.GL873550           143614 11 +  18854210 AATCAACTTTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26253639 11 +  26524999 AACTAATTTTT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               154074 15760 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I

a score=461603.000000
s hg38.chr6_GL000254v2_alt   919268 43 +   4827813 AAAAGTACAAAAAAGCCATATTATGTAT----TAATGTGGAATTATG
s panTro5.chr6             29882189 43 + 175400573 AAAAGTACAAAAAAGCCATATTATGTAT----TAACGTGGAATTATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116507 43 + 173848474 AAAAGTACAAAAAAGCCATATTATGTAT----TAACGTGGAATTATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915442 43 +   6154872 AAAAGTACAAAAAAGCCATATTATGTAT----TAATGTGGAATTATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74629700 43 + 122973662 AAAAGTACAAAAAAGCCATATTATATAT----TATTGTGGAATTATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30113969 47 + 172585720 AAAAGTACAAAAAAGCTATATTATATATTTATTAACGTGGAATTATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777045 47 - 170955103 AAAAGTACAAAAAAGCTATATTATATATTTATTAACGTGGAATTATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2824587 47 -   2996164 AAAAGTACAAAAAAGCTATATTATATATTTATTAACGTGGAATTATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574084 47 +    766320 AAAAGTACAAAAAAGCTATATTATATATTTATTAACGTGGAATTATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29030510 46 -  71996105 AAAAGT-CCAAAAAGCTATGTTATATATTTATTAACGTGGAACTATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     216264 47 +    290775 AAAAGTACAAAAAAGCTATATTATATATTTAGTAACGTGGAATTATG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2666025 47 -   3067355 AAAAGTACAAAAAAGCTATATTATATATTTATTAACGTGGAATTATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      43830 43 +    132061 AAAAGTACAAAAAAGCTATGTTATATAT----TAATGTGGAATTATG
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     334722 41 -    457564 AAAAGTACAAAAAAGC--TGTTATATAT----TAATGTGGAATTATG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               169834 43 + 123392446 AAAAGTACAAGAAAGCTATATTATGTAT----TAATGTGAAATTATG
i micMur3.chr6             I 15760 C 0
s proCoq1.NW_012152574v1     636812 43 +    730504 AAAAGTACAGGAGAGCTATATTATGTAT----TAATGTGGAATTATG
i proCoq1.NW_012152574v1   C 0 I 71
s otoGar3.GL873550           143625 42 +  18854210 CAAAGTACAAGCGAGC-ATATTATGTAT----TAATGTGGAATTATG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26253650 41 +  26524999 GGAAGCACAAG--AGCTAAATTATGTGT----TAATGTGGAACTATG
i canFam3.chr35            C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I

a score=28042.000000
s hg38.chr6_GL000254v2_alt   919311  5 +   4827813 ---------------------AATTA----------
s panTro5.chr6             29882232  5 + 175400573 ---------------------AATTA----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116550  5 + 173848474 ---------------------AATTA----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915485  5 +   6154872 ---------------------AATTA----------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74629743  5 + 122973662 ---------------------AATTA----------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114016  5 + 172585720 ---------------------AATTA----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777092  5 - 170955103 ---------------------AATTA----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2824634  5 -   2996164 ---------------------AATTA----------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574131  5 +    766320 ---------------------AATTA----------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29030556  5 -  71996105 ---------------------AATTA----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     216311  5 +    290775 ---------------------AATTA----------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2666072  5 -   3067355 ---------------------AATTA----------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      43873  5 +    132061 ---------------------CATTA----------
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     334763  5 -    457564 ---------------------CATTA----------
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               169877  5 + 123392446 ---------------------CATTA----------
i micMur3.chr6             C 0 I 213
s otoGar3.GL873550           143667  5 +  18854210 ---------------------CATTA----------
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26253691 36 +  26524999 CTTTTTTTTTTTTTTTTTTTGAACTATGCGTTGTTA
i canFam3.chr35            C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     636855 71 +    730504 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I

a score=496620.000000
s hg38.chr6_GL000254v2_alt   919316 64 +   4827813 AGTAGACAACAAGAATCAAAACAGGGTGTCTATTATCACTTCTGATAACA--TAAATAATGTAAAG
s panTro5.chr6             29882237 64 + 175400573 AGTAGACAACAAGAATCAAAACAGGGTGTCTATTATCACTTCTGATAACA--TAAATAATGTAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116555 64 + 173848474 AGTAGACAACAAGAATCAAAACAGGGTGTCTATTATCACTTCTGATAACA--TAAATAATGTAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915490 64 +   6154872 AGTAGACAACAAGAATCAAAACGGTGTGTCTATTATCACTTCTGATAACA--TAAATAATGTAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74629748 64 + 122973662 AGTGGACAACAAGAATCAAAACAGTGTGTCTATTATCACTTCTGATAACA--TAAATAATGTAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114021 66 + 172585720 AGTGGACAACAAGAATCAAAACAGTGTGTCTATTATCACTTCTGATAACAGATAAATAATGTAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777097 66 - 170955103 AGTGGACAACAAGAATCAAAACAGTGTGTCTATTATCACTTCTGATAACAGATAAATAATGTAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2824639 66 -   2996164 AGTGGACAACAAGAATCAAAACAGTGTGTCTATTATCACTTCTGATAACAGATAAATAATGTAAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574136 66 +    766320 AGTGGACAACAAGAATCAAAACAGTGTGTCTATTATCACTTCTGATAACAGATAAATAATGTAAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29030561 66 -  71996105 AGTGGACAACAAGAATCAAAACAGTGTGTCTATTATCACTTCTGATAACAGATAAATAATGTAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     216316 66 +    290775 AGTGGACAACAAGAATCAAAACAGCGTGTCTATTATCACTTCTGATAACAGATAAATAATGTAAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2666077 62 -   3067355 AGTGGACAACAAGAATAAAAACAGTGTGTCTATTATCACTTCAGATAACAG----ATAGTGTAAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      43878 65 +    132061 AGTGGACAATAGAAATTAGAGAA-TGTGTCTATTATCACTTCTGATAACAGATAAATAATGCAAAG
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     334768 60 -    457564 AGTGGACAATAGGAATCAGAGCA--GTGTCTATTATCACTTCTGATAAC----AAATAATGCAAAG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           143673 66 +  18854210 CATGCAACAGAAAAAGTATAACAGTGTGTCTCTCATCATTTGTGATAATAGACAAATAGTGTAAAG
i otoGar3.GL873550         I 1 C 0
s canFam3.chr35            26253727 52 +  26524999 AGTGAACA--CAGATGGAGAACAGTGTGTCTGTTGTCCTTTGTG-TAACA--TACAT---------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               169882 213 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     636855 71 +    730504 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I

a score=982385.000000
s hg38.chr6_GL000254v2_alt   919380 108 +   4827813 ATACATATTTTACAGATTATCTGTAAAAGCTTATACAGTACTGTTGCTGGGTATTT-ATGTAGGaaagctaccatttattgaatgcttactatTTCACATATGGACAGC
s panTro5.chr6             29882301 108 + 175400573 ATACATATTTTACAGATTATCTGTAAAAGCTTGTACAGTACTGTTGCTGGGTATTT-ATGTAGGaaagctaccatttattgaatgcttactatTTCACATATGGACAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116619 108 + 173848474 ATACATATTTTACAGATTATCTGTAAAAGCTTGTACAGTACTGTTGCTGGGTATTT-ATGTAGGaaagctaccatttattgaatgcttactatTTCACATATGGACAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915554 108 +   6154872 ATACATATTTTACAGATTATCTGTAAAAGCTTATACAGTACTGTTGCTGGGTATTT-ATGTAGGaaagctaccatttattgaatgcttactatTTCACATATGGACAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74629812 108 + 122973662 ATATATATTTTACAGATTATCTGTAAAAGCTTATACAGCACTGTTGCTGGGTATTT-ATGTAGGaaagctactatttattgagtgcttactatTTCACATATGGACAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114087 109 + 172585720 ATATATATTTTACAGATTATCTGGAAAACCTTATACAGTACTGTTGCTGGGTATTTAATGTAGGaaagttatcatttattgagtgcttactatTTCACATATGGACAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777163 109 - 170955103 ATATATATTTTACAGATTATCTGGAAAACCTTATACAGTACTGTTGCTGGGTATTTAATGTAGGaaagttatcatttattgagtgcttactatTTCACATATGGACAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2824705 109 -   2996164 ATATATATTTTACAGATTATCTGGAAAACCTTATACAGTACTGTTGCTGGGTATTTAATGTAGGAAAGTTATCATTTATTGAGTGCTTACTATTTCACATATGGACAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574202 109 +    766320 ATATATAGTTTACAGATTATCTGGAAAACCTTATACAGTACTGTTGCTGGGTATTTAATGTAGGaaagttatcatttattgagtgcttactatTTCACATATGGACAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29030627 109 -  71996105 ATATATATTTTACAGATTATCTGGAAAACCTTATACAGTACTGTTGCTGGGTATTTAATGTAGGAAAGTTATCATTTATTGAGTGCTTACTATTTCACATATGGACAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     216382 109 +    290775 ATATATAGTTTACAGATTATCTGGAAAACCTTATACAGTACTGTTGCTGGGTATTTAATGTAGGAAAGTTATCATTTATTGAGTGCTTACTATTTCACATATGGACAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2666139 109 -   3067355 ATATATATTTTACAGATTATATGGAAAACCTTATACAGTACTGTTGCTGGGTATTTAATGTAGGaaagttatcatttattgagtgcttactatTTCACATATGGATAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      43943 103 +    132061 ATATATATTTTACACATTATCTGGAAAAGCTTATACAGTACTGTTGCTGGTTTTCT-ATGTAGGaaagctaccatttattgagcgcttactatTTCACATATGG-----
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     334828 103 -    457564 ATATATATTTTATACATTATCTGGAAAAGCTTATACAGTACTGTTGCTGGTTTTCT-ATGCAGGaaagctaccatttattgagtgtttactatTTCACATATGG-----
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     636926 107 +    730504 ATATATATTTTACACATTATCTGGAAAATCTTACATAGTACTGGTACTGGGTAACT-ATGTAGGTGAGCTACCATTTACTGA-AGTTTACTATTTCACATATCGACAGC
i proCoq1.NW_012152574v1   I 71 I 149
s otoGar3.GL873550           143739 106 +  18854210 -TATGTATTTTACACCTTAGCAAGAAAATCTTACACAGTGCTGTTACTAGGTAACT-ATGTAAGTAAGCTACCACTTATTGA-TGTTTACTATCTCACATGTGGACAGC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26253779  85 +  26524999 -----------------CATCTGGAGGAGCTCAGACAATGCTCTTATTGCTTAACT-A-GCTGCATAGCTACTACTTCCTA-----TTACTATTTTGCAGACGGACACC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               169882 213 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I

a score=72233.000000
s hg38.chr6_GL000254v2_alt   919488 12 +   4827813 ATAGAGCATGTT
s panTro5.chr6             29882409 12 + 175400573 ATAGAGCATGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116727 12 + 173848474 ATAGAGCATGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915662 12 +   6154872 ATAGAGCATGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74629920 12 + 122973662 ATACAGCATGTT
i nomLeu3.chr1a            C 0 I 2
s rheMac8.chr4             30114196 12 + 172585720 ATACAGCATGTT
i rheMac8.chr4             C 0 I 2
s macFas5.chr4             29777272 12 - 170955103 ATACAGCATGTT
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1    2824814 12 -   2996164 ATACAGCATGTT
i macNem1.NW_012011356v1   C 0 I 2
s cerAty1.NW_012002711v1     574311 12 +    766320 ATACAGCATGTT
i cerAty1.NW_012002711v1   C 0 I 3
s chlSab2.chr17            29030736 12 -  71996105 ATACAGCATGTT
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012099233v1     216491 12 +    290775 ATACAGCATGTT
i manLeu1.NW_012099233v1   C 0 I 3
s colAng1.NW_012115566v1    2666248 12 -   3067355 ATACAACATGTT
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chrUn_GL286223      44046  9 +    132061 ---CAGCATATT
i calJac3.chrUn_GL286223   C 0 I 1
s aotNan1.NW_018509740v1     334931 10 -    457564 --AAAGCATATT
i aotNan1.NW_018509740v1   C 0 I 1
s otoGar3.GL873550           143845  5 +  18854210 -------ATATT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26253864  7 +  26524999 --AGGTCAC---
i canFam3.chr35            C 0 C 0
e micMur3.chr6               169882 213 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637033 149 +    730504 I
e cebCap1.NW_016107755v1     252729 4033 -   1771730 I

a score=519240.000000
s hg38.chr6_GL000254v2_alt   919500 56 +   4827813 AAAAAATTACCACACA----CATTTACTGTATTC--A--ATGTGTCACTCTGAATATATTACTG
s panTro5.chr6             29882421 56 + 175400573 AAAAAATTACCACACA----CATTTACTGTATTC--A--ATGTGTCACTCTGAATATATTACTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116739 56 + 173848474 AAAAAATTACCACACA----CATTTACTGTATTC--A--ATGTGTCACTCTGAATATATTACTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915674 56 +   6154872 AAAAAATTACCACACA----CATTTACTGTATTC--A--ATGTGTCACTCTGAATATATTACTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74629934 56 + 122973662 AAAAAATTACCACACA----CACTTATTGTATTC--A--TTGTGTCACTCTGAATATATTACTG
i nomLeu3.chr1a            I 2 C 0
s rheMac8.chr4             30114210 56 + 172585720 AAAAAATTACCACACA----CATTTATTGTATTC--A--GTGTGTCACTCTGAATATATTACTG
i rheMac8.chr4             I 2 C 0
s macFas5.chr4             29777286 56 - 170955103 AAAAAATTACCACACA----CATTTATTGTATTC--A--GTGTGTCACTCTGAATATATTACTG
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1    2824828 56 -   2996164 AAAAAATTACCACACA----CATTTATTGTATTC--A--GTGTGTCACTCTGAATATATTACTG
i macNem1.NW_012011356v1   I 2 C 0
s cerAty1.NW_012002711v1     574326 56 +    766320 AAAAAATTACCACACA----CATTTATTGTATTC--A--GTGTGTCACTCTGAATATATTACTG
i cerAty1.NW_012002711v1   I 3 C 0
s chlSab2.chr17            29030750 56 -  71996105 AAAAAATTGCCACACG----TATTTATTGTATTC--A--GTGTGTCACTCTGAATATATTACTG
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012099233v1     216506 56 +    290775 AAAAAATTACCACACA----CATTTATTGTATTC--A--GTGTGTCACTCTGAATATATTACTG
i manLeu1.NW_012099233v1   I 3 C 0
s colAng1.NW_012115566v1    2666261 56 -   3067355 AAAAAATTACCACATA----CATTTATTGTATTC--A--GTGTGTCACTCTGAATATATTACTG
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chrUn_GL286223      44056 56 +    132061 TAAAAATTACCACCCA----CTTTCATTGTATTC--A--GTGTGTCATTTTGAATATATTACTG
i calJac3.chrUn_GL286223   I 1 C 0
s cebCap1.NW_016107755v1     256762 56 -   1771730 AAAAAATTACCACACA----CTTTCATTGTATTC--A--GTGCGTCGCTTTGAATATATTGCTG
i cebCap1.NW_016107755v1   I 4033 C 0
s aotNan1.NW_018509740v1     334942 56 -    457564 GAAAAATTACCACACA----CTTTCATTGTATTC--A--GTGTGTCACTTTCAATATATTGCTG
i aotNan1.NW_018509740v1   I 1 C 0
s otoGar3.GL873550           143850 53 +  18854210 ----AATAACCATATA-----ATTCATTATATTCAGA--GTGTGTGATTTTACATACATGACTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26253871 56 +  26524999 ------TTAGCACACACGGTCGGTTGCTGTGCTG--ATGATATGCCACTCTGCCGGCCTGACCC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               169882 213 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637033 149 +    730504 I

a score=798456.000000
s hg38.chr6_GL000254v2_alt   919556 69 +   4827813 TGTACATGGTCTGTCATTG---GACATGGTGAGAGATG-------CAGATTAAGCTGAAATTACTGAGGACAGCAACAC
s panTro5.chr6             29882477 69 + 175400573 TGTACATGGTCTGTCATTG---GACATGGTGAGAGATG-------CAGATTAAGCTGAAATTACTGAGGACAGCAACAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116795 69 + 173848474 TGTACATGGTCTGTCATTG---GACATGGTGAGAGATG-------CAGATTAAGCTGAAATTACTGAGGACAGCAACAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915730 69 +   6154872 TGTACATGGTCTGTCATTG---GACATGGTGAGAGATA-------CAGATTAAGCTGAAATTACTGAGGACAGCAACAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74629990 69 + 122973662 TGTACATGGTCTGTCATTG---GACATGGTGAGAGATG-------CAGATTAAGCTGAAATTACTGAGGACAGCAACAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114266 69 + 172585720 TGTACATGGTCTGTCATTG---GACATGGTGAGAAATG-------CAGATTAAGCTAAAATTACTGAGGACAGCAACAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777342 69 - 170955103 TGTACATGGTCTGTCATTG---GACATGGTGAGAAATG-------CAGATTAAGCTAAAATTACTGAGGACAGCAACAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2824884 69 -   2996164 TGTACATGGTCTGTCATTG---GACATGGTGAGAAATG-------CAGATTAAGCTAAAATTACTGAGGACAGCAACAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574382 69 +    766320 TGTACATGGTCTGTCATTG---GACATGGTGAGAAATG-------CAGATTAAGCTAAAATTACTGAGGACAGCAACAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29030806 69 -  71996105 TGTACATGGTCTGTCATTG---GACATAGTGAGAAATG-------CAGATTAAGCTAAAATTACTGAGGACAGCAACAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     216562 69 +    290775 TGTACATGGTCTGTCACTG---GACATGGTGAGAAATG-------CAGATTAAGCTAAAATTACTGAGGACAGCAACAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2666317 69 -   3067355 TGTACATGGTCTGTCATTG---GACATGGTGAGAAATG-------CAGATTAAGCTAAAATTACTGAGGACAGCAACAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      44112 76 +    132061 TGTACATGGTCTGTCACTG---GACATGGTGAGAGATGCAGATTTCAGATTAAGTTGAAATTATTGAGAACAGCAACAC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     256818 76 -   1771730 TGTACATGGTCTGTCACTG---GACATGGTGAGAGGTGCAGATTGCAGATTAAGTTGAAATTATTGAGGACAGCAACAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     334998 76 -    457564 TGTACGTGGTCTGTCACTG---GACATGGTGAGACATGCAGATTGCAGATTAAGTTGAAATTATTGAGGACAGCAACAC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               170095 69 + 123392446 TGTATATGGCCTGTCATTA---GACATGGTGAGAGATG-------CAGATTAAACTGAGATTATTGAGGAGAGAAACAC
i micMur3.chr6             I 213 I 27
s otoGar3.GL873550           143903 69 +  18854210 TGTATATGACCTGTCGTTA---AACATGGTTAGAAATA-------CAGATTAAACTGAAATCATTGAGGAGAGAAACAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26253927 62 +  26524999 ----CATGCCCTGCCTGGGACCGACATGGTGAGAGGCC-------CAAATAAAGTGGAAATTACTGA------CAACCC
i canFam3.chr35            C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637033 149 +    730504 I

a score=44360.000000
s hg38.chr6_GL000254v2_alt   919625 5 +   4827813 TGGAA
s panTro5.chr6             29882546 5 + 175400573 TGGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116864 5 + 173848474 TGGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915799 5 +   6154872 TGGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630059 5 + 122973662 TGGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114335 5 + 172585720 TGGaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777411 5 - 170955103 TGGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2824953 5 -   2996164 TGGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574451 5 +    766320 TGGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29030875 5 -  71996105 TGGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     216631 5 +    290775 TGGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2666386 5 -   3067355 TGGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      44188 5 +    132061 TAGAG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     256894 5 -   1771730 AGGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     335074 5 -    457564 AGGAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           143972 4 +  18854210 -AAAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26253989 5 +  26524999 AGGAA
i canFam3.chr35            C 0 I 149
e micMur3.chr6               170164 27 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637033 149 +    730504 I

a score=59871.000000
s hg38.chr6_GL000254v2_alt   919630 7 +   4827813 GAAAATT
s panTro5.chr6             29882551 7 + 175400573 GAAAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116869 7 + 173848474 GAAAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915804 7 +   6154872 GAAAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630064 7 + 122973662 GAAAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114340 7 + 172585720 gaaaatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777416 7 - 170955103 GAAAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2824958 7 -   2996164 GAAAATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574456 7 +    766320 GAAAATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29030880 7 -  71996105 GAAAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     216636 7 +    290775 GAAAATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2666391 7 -   3067355 GAAAATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      44193 7 +    132061 GTAAACT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     256899 7 -   1771730 GTAAACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     335079 7 -    457564 GTAAACT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           143976 7 +  18854210 GAGAAGT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               170164 27 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637033 149 +    730504 I
e canFam3.chr35            26253994 149 +  26524999 I

a score=437375.000000
s hg38.chr6_GL000254v2_alt   919637 51 +   4827813 GAgctgggtgtagtggctcagcctgtaattccaacatttcagaaggctgag
s panTro5.chr6             29882558 51 + 175400573 GAgctgggtgtagtggctcagcctgtaattccaacatttcagaaggctgag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116876 51 + 173848474 GAgctgggtgtagtggcttagcctgtaattccaacatttcagaaggctgag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915811 51 +   6154872 GAgctgggtgtagtggctcagcctgtaattccaacatttcagaaggctgag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630071 51 + 122973662 GAGCTGCATgtggtggctcagcctgtaagcccaacatttcagaaggctgag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114347 51 + 172585720 gagctgggtgtggtggctcaggctgtaatcccaacactttagaaggttgag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777423 51 - 170955103 GAgctgggtgtggtggctcaggctgtaatcccaacactttagaaggttgag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2824965 51 -   2996164 GAgctgggtgtggtggctcaggctgtaatcccaacactttagaaggctgag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574463 51 +    766320 GAgctgggtgtggtggctcaggctgtaatcccaacactttagaaggctgag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29030887 51 -  71996105 GAgctgggtgtggtggctcaggctgtaatcccaacactttagaaggctgag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     216643 51 +    290775 GAgctgggtgtggtggctcaggctgtaatcccaacactttagaaggctgag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2666398 51 -   3067355 GAgctgggtgtggtgggtcagcctgtaatcccaacactttagaaggctgag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      44200 48 +    132061 GAGCTGGGT---gtggctcagcctataatccaaacacttcaggaggctgag
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     256906 51 -   1771730 GAgctgagtgtggtggctcagcctgtaatctcaacacttcaggaggctgag
i cebCap1.NW_016107755v1   C 0 I 121
s aotNan1.NW_018509740v1     335086 51 -    457564 GAgctgggtgtggtggctcagcctgtaatcccaacacttcaggaggctgag
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               170164 27 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637033 149 +    730504 I
e canFam3.chr35            26253994 149 +  26524999 I
e otoGar3.GL873550           143983  0 +  18854210 C

a score=288655.000000
s hg38.chr6_GL000254v2_alt   919688 35 +   4827813 gcaggaggatcacttgagtccaggagtttgagacc
s panTro5.chr6             29882609 35 + 175400573 gcaggaggatcacttgagtccaggagtttgagacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116927 35 + 173848474 gcaggaggatcacttgagtccaggagtttgagacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915862 35 +   6154872 gcaggaggatcacttgagtccaggagtttgagacc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630122 35 + 122973662 ggaggagggtcacttgagtccaggagtttgagacc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114398 35 + 172585720 gcaggaggatcacttgagtccaggagtttgagacc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777474 35 - 170955103 gcaggaggatcacttgagtccaggagtttgagacc
i macFas5.chr4             C 0 I 124
s macNem1.NW_012011356v1    2825016 35 -   2996164 gcaggaggatcacttgagtccaggagtttgagacc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574514 35 +    766320 gcaggaggatcacttgagtccaggagtttgagacc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29030938 35 -  71996105 gcaggaggatcacttgagtccaggagtttgagacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     216694 35 +    290775 gcaggaggatcacttgagtccaggagtttgagacc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2666449 35 -   3067355 gcaggaggatcacttgagtccaggagtttgagacc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      44248 35 +    132061 atgggaggatcacttgagtccaggagtttgagacc
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     335137 35 -    457564 atgggaggatcacctgaatccaggagtttgagacc
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               170164 27 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637033 149 +    730504 I
e canFam3.chr35            26253994 149 +  26524999 I
e otoGar3.GL873550           143983  0 +  18854210 C
e cebCap1.NW_016107755v1     256957 121 -   1771730 I

a score=8281.000000
s hg38.chr6_GL000254v2_alt   919723 1 +   4827813 a
s panTro5.chr6             29882644 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116962 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915897 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630157 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114433 1 + 172585720 a
i rheMac8.chr4             C 0 I 128
s macFas5.chr4             29777633 1 - 170955103 a
i macFas5.chr4             I 124 C 0
s macNem1.NW_012011356v1    2825051 1 -   2996164 a
i macNem1.NW_012011356v1   C 0 I 123
s cerAty1.NW_012002711v1     574549 1 +    766320 a
i cerAty1.NW_012002711v1   C 0 I 79
s chlSab2.chr17            29030973 1 -  71996105 a
i chlSab2.chr17            C 0 I 177
s manLeu1.NW_012099233v1     216729 1 +    290775 a
i manLeu1.NW_012099233v1   C 0 I 6334
s colAng1.NW_012115566v1    2666484 1 -   3067355 a
i colAng1.NW_012115566v1   C 0 M 3978
s calJac3.chrUn_GL286223      44283 1 +    132061 a
i calJac3.chrUn_GL286223   C 0 I 30
s aotNan1.NW_018509740v1     335172 1 -    457564 a
i aotNan1.NW_018509740v1   C 0 I 37
e micMur3.chr6               170164 27 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637033 149 +    730504 I
e canFam3.chr35            26253994 149 +  26524999 I
e otoGar3.GL873550           143983 0 +  18854210 C
e cebCap1.NW_016107755v1     256957 121 -   1771730 I

a score=13603.000000
s hg38.chr6_GL000254v2_alt   919724 8 +   4827813 agggaaag
s panTro5.chr6             29882645 8 + 175400573 agggaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116963 7 + 173848474 agggaaa-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915898 8 +   6154872 agggaaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630158 8 + 122973662 agggaaag
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29777634 8 - 170955103 aaggaaag
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     574629 8 +    766320 agagaaag
i cerAty1.NW_012002711v1   I 79 C 0
s calJac3.chrUn_GL286223      44314 8 +    132061 aaaaaaag
i calJac3.chrUn_GL286223   I 30 C 0
e micMur3.chr6               170164 27 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637033 149 +    730504 I
e canFam3.chr35            26253994 149 +  26524999 I
e otoGar3.GL873550           143983 0 +  18854210 C
e aotNan1.NW_018509740v1     335173 37 -    457564 I
e cebCap1.NW_016107755v1     256957 121 -   1771730 I
e colAng1.NW_012115566v1    2666485 3978 -   3067355 M
e manLeu1.NW_012099233v1     216730 6334 +    290775 I
e chlSab2.chr17            29030974 177 -  71996105 I
e macNem1.NW_012011356v1    2825052 123 -   2996164 I
e rheMac8.chr4             30114434 128 + 172585720 I

a score=7092.000000
s hg38.chr6_GL000254v2_alt   919732 2 +   4827813 aa
s panTro5.chr6             29882653 2 + 175400573 aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116970 2 + 173848474 aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915906 2 +   6154872 aa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630166 2 + 122973662 aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114562 2 + 172585720 aa
i rheMac8.chr4             I 128 C 0
s macFas5.chr4             29777642 2 - 170955103 aa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     574637 2 +    766320 aa
i cerAty1.NW_012002711v1   C 0 I 17
s calJac3.chrUn_GL286223      44322 2 +    132061 ga
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     335210 2 -    457564 aa
i aotNan1.NW_018509740v1   I 37 C 0
e micMur3.chr6               170164 27 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637033 149 +    730504 I
e canFam3.chr35            26253994 149 +  26524999 I
e otoGar3.GL873550           143983 0 +  18854210 C
e cebCap1.NW_016107755v1     256957 121 -   1771730 I
e colAng1.NW_012115566v1    2666485 3978 -   3067355 M
e manLeu1.NW_012099233v1     216730 6334 +    290775 I
e chlSab2.chr17            29030974 177 -  71996105 I
e macNem1.NW_012011356v1    2825052 123 -   2996164 I

a score=60892.000000
s hg38.chr6_GL000254v2_alt   919734 16 +   4827813 aagaaaagaagctttc
s panTro5.chr6             29882655 16 + 175400573 aagaaaagaagctttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116972 16 + 173848474 aagaaaagaagctttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915908 16 +   6154872 aagaaaagaagctttc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630168 16 + 122973662 aagaaaagaagttttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114564 16 + 172585720 aaggaaagaaGTTTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777644 14 - 170955103 --ggaaagaagtttcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825175 16 -   2996164 aaggaaagaagtttcc
i macNem1.NW_012011356v1   I 123 C 0
s cerAty1.NW_012002711v1     574656 16 +    766320 aaggaaagaagtttcc
i cerAty1.NW_012002711v1   I 17 C 0
s chlSab2.chr17            29031151 16 -  71996105 aaggaaagaagtttcc
i chlSab2.chr17            I 177 C 0
s calJac3.chrUn_GL286223      44324 13 +    132061 --aagaaaaagtttc-
i calJac3.chrUn_GL286223   C 0 I 1
s aotNan1.NW_018509740v1     335212 13 -    457564 --aagaaaaagtttc-
i aotNan1.NW_018509740v1   C 0 I 1
e micMur3.chr6               170164 27 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637033 149 +    730504 I
e canFam3.chr35            26253994 149 +  26524999 I
e otoGar3.GL873550           143983  0 +  18854210 C
e cebCap1.NW_016107755v1     256957 121 -   1771730 I
e colAng1.NW_012115566v1    2666485 3978 -   3067355 M
e manLeu1.NW_012099233v1     216730 6334 +    290775 I

a score=1028749.000000
s hg38.chr6_GL000254v2_alt   919750 186 +   4827813 atttagccaggcatgctggcacatacctgtagtttcagctactcaggaggttgaggcataaggttcacttaaacttgagaggtaaaggctgcagtgagccctgatcacgccactgctctccagcc--tgtgacagagagagaccctgtctc----aaaaacgagaaagaaagaaaaaaaGAGGCAACTCAAG
s panTro5.chr6             29882671 186 + 175400573 atttagccaggcatgctggcacatacctgtagtttcagctactcaggaggttgaggcataaggttcacttaaacttgagaggtcaaggctgcagtgagccctgatcacgccactgctctccagcc--tgtgacagagagagaccctgtctc----aaaaaagagaaagaaacaaaaaaaGAGGCAACTCAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30116988 186 + 173848474 atttagccaggcatgctggcacatacctgtagtttcagctactcaggaggttgaggcataaggttcacttaaacttgagaggtcaaggctgcagtgagccctgatcacgccactgctctccagcc--tgtgatagagagagaccctgtctc----aaaaaagagaaagaaagaaaaaaaGAGGCAACTCAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5915924 186 +   6154872 atttagccaggcatgctggcacatacctgtagtttcagctactcaggaggttgaggcataaggttcacttaaacttgagaggtcaaggctgcagtgagccctgatcacgccactgctctccagcc--tgtgacagagagagaccctgtctc----aaaaaagagaaagaaagaaaaaaaGAGGCAACTCAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630184 177 + 122973662 atttagccaggcatgctggtacatacctgta---tcagctactcggaaggttgaggcataaggttcacttaaacttgagaggtcaaggctgcagtgagccctgatcacgccactgctctccagcc--tgtgac--agagagaccctgtctc----aaaaa----aaagaaaggaaaaaaGAGGCAACTCAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114580 178 + 172585720 ATttagccaggcatggtggcatatacctgtagtttcagctactcgggaggttgaggcataaggatcgcttaaacttgagaggtcaaggctgcagtgggccctgatcacgccactgttctccagcc--tgtgtgacagagagaccctgtctc-------aa----aaaaaaaaaaaaaaaGAGGCAACTCAA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777658 178 - 170955103 atttagccaggcatggtggcatatacctgtagtttcagctactcgggaggttgaggcataaggatcgcttaaacttgagaggtcaaggctgcagtgggccctgatcacgccactgttctccagcc--tgtgtgacagagagaccctgtctc-------aa----aaaaaaaaaaaaaaaGAGGCAACTCAA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825191 176 -   2996164 atttagccaggcatggtggcatatacctgtagtttcagctactcgggaggttgaggcataaggatcgcttaaacttgagaggtcaaggctgcagtgggccctgatcacgccactgttctccagcc--tgtgtgacagagagaccctgtctc-------------aaaaaaaaaaaaaaaGAGGCAACTCAA-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574672 181 +    766320 atttagccaggcatggtggcatatacctatagtttcagctactcaggaggttgaggcataaggatcgcttaaacttgagaggtcaaggctgcagtgggccctgatcatgccactgttctccagcc--tgtgtgacagagagaccctgtctc----aaaaa----aaaaaaaaaaaaaaaGAGGCAACTCAA-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29031167 182 -  71996105 atttagccaggcatggtggcatatacctgtagtttcagctactcgggaggttgaggcataaggattgcttaaacttgagaggtcaaggctgcagtgggccctgatcacaccactgttctccagcc--tgtgtgacagagagacgctgtctc---aaaaaa----caaaaataaaaaaaaGAGGCAACTCAA-
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      44338 168 +    132061 atttagcaaggcatggtggcacatacctgtagttttagctacttgagaggttgaggcataaagatcgcttgaacctgggagatcaaggctgcagtgggccctgatcatgcccctgctctccagcctatgtgacagagagagacactgtctc-------------aaaagaaaaagaaaaaa-----------
i calJac3.chrUn_GL286223   I 1 C 0
s cebCap1.NW_016107755v1     257078 177 -   1771730 atttagcaaggcatggtggcacatacctgtagtttcagctacttgagaggttgaggcataaggattggttgaacctgggaggtcaaggctgcagtgggccctgatcatgccactgctctccagcctgtgtgacagagagagacactgtctc----aaaaaacaaaaaagaaaaagaaaaaa-----------
i cebCap1.NW_016107755v1   I 121 C 0
s aotNan1.NW_018509740v1     335226 181 -    457564 atttagcaaggcatggtggcacatacctgtagtttcagctacttgagaggctgaggcctaaggatcgcttgaacctgggaggtcaaggctgcagtgggccctgatcatgccactgctctccagcctatgtgacagagagagacactgtctcaaaaaaaaaaaaaaaaagaaagaaaaagaa-----------
i aotNan1.NW_018509740v1   I 1 C 0
e micMur3.chr6               170164  27 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637033 149 +    730504 I
e canFam3.chr35            26253994 149 +  26524999 I
e otoGar3.GL873550           143983   0 +  18854210 C
e colAng1.NW_012115566v1    2666485 3978 -   3067355 M
e manLeu1.NW_012099233v1     216730 6334 +    290775 I

a score=116083.000000
s hg38.chr6_GL000254v2_alt   919936 24 +   4827813 AACTCAGGAATACTTGCAGGATCT
s panTro5.chr6             29882857 24 + 175400573 AACTCAGGAATACTTGCAGGATCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117174 24 + 173848474 AACTCAGGAATACTTGCAGGATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916110 24 +   6154872 AACTCAAGAATACTTGCAGGATCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630361 24 + 122973662 AACTCAAGAATACTTGCAGGATCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114758 17 + 172585720 -------GAATGCTTGCAGGATCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777836 17 - 170955103 -------GAATGCTTGCAGGATCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825367 17 -   2996164 -------GAATGCTTGCAGGATCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574853 17 +    766320 -------GAATGCTTGCAGGATCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29031349 17 -  71996105 -------GAATGCTTGCAGGATCT
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      44506 17 +    132061 -------gaaTACTTGCAAGATCA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     257255 17 -   1771730 -------gaaTACGTGCAAGATCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     335407 17 -    457564 -------GAATACTTGCAAGATTA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           143983 24 +  18854210 AACTTGGGAATACTTGCAAAATAA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               170164 27 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637033 149 +    730504 I
e canFam3.chr35            26253994 149 +  26524999 I
e colAng1.NW_012115566v1    2666485 3978 -   3067355 M
e manLeu1.NW_012099233v1     216730 6334 +    290775 I

a score=155629.000000
s hg38.chr6_GL000254v2_alt   919960 17 +   4827813 CATAACATATGCTATAC
s panTro5.chr6             29882881 17 + 175400573 CATAACATATGCTATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117198 17 + 173848474 CATAACATATGCTATAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916134 17 +   6154872 CATAACATATGCTATAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630385 17 + 122973662 CATAACATATGCTATAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114775 17 + 172585720 CATAACATATGCTATAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777853 17 - 170955103 CATAACATATGCTATAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825384 17 -   2996164 CATAACATATGCTATAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574870 17 +    766320 CATAACATATGCTATAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29031366 17 -  71996105 CATAACATATGCTATAC
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      44523 17 +    132061 CATAACATATGCTATAC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     257272 17 -   1771730 CATAACATATGCTATGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     335424 17 -    457564 CATAACATATGCTATAC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     637182 17 +    730504 CATAACATATGCTACTC
i proCoq1.NW_012152574v1   I 149 C 0
s otoGar3.GL873550           144007 17 +  18854210 CATAACATACACCATAC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               170164 27 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e canFam3.chr35            26253994 149 +  26524999 I
e colAng1.NW_012115566v1    2666485 3978 -   3067355 M
e manLeu1.NW_012099233v1     216730 6334 +    290775 I

a score=248220.000000
s hg38.chr6_GL000254v2_alt   919977 25 +   4827813 AAAATCAATTAAAATAATATTTAAA
s panTro5.chr6             29882898 25 + 175400573 AAAATCAATTAAAATAATATTTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117215 25 + 173848474 AAAATCAATTAAAATAATATTTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916151 25 +   6154872 AAAATCAATTAAAATAATATTTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630402 25 + 122973662 AAAATCAATTAAAATAATATTTAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114792 25 + 172585720 AAAATCAATTAAAATAACATTTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777870 25 - 170955103 AAAATCAATTAAAATAACATTTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825401 25 -   2996164 AAAATCAATTAAAATAACATTTAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574887 25 +    766320 AAAATCAATTAAAATAACATTTAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29031383 25 -  71996105 AAAATCAATTAAAATAACATTTAAA
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      44540 25 +    132061 AAAATCAATTAAAATAACATTTAAA
i calJac3.chrUn_GL286223   C 0 I 309
s cebCap1.NW_016107755v1     257289 25 -   1771730 AAAATCAATTAACATAACATTTAAA
i cebCap1.NW_016107755v1   C 0 I 319
s aotNan1.NW_018509740v1     335441 25 -    457564 AAAATCAATTAAAATAACATTTAAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               170191 25 + 123392446 AAAATCAATTAAAATAACATTTAAG
i micMur3.chr6             I 27 C 0
s proCoq1.NW_012152574v1     637199 25 +    730504 GAAATCAATTAAAATAACATTTAAG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           144024 25 +  18854210 AAAATTAATTAAAATAACAtttttt
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e canFam3.chr35            26253994 149 +  26524999 I
e colAng1.NW_012115566v1    2666485 3978 -   3067355 M
e manLeu1.NW_012099233v1     216730 6334 +    290775 I

a score=46380.000000
s hg38.chr6_GL000254v2_alt   920002 5 +   4827813 TGCTG
s panTro5.chr6             29882923 5 + 175400573 TGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117240 5 + 173848474 TGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916176 5 +   6154872 TGCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630427 5 + 122973662 TGCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114817 5 + 172585720 TGCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777895 5 - 170955103 TGCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825426 5 -   2996164 TGCTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574912 5 +    766320 TGTTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29031408 5 -  71996105 TGCTG
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      44874 5 +    132061 TGCTG
i calJac3.chrUn_GL286223   I 309 C 0
s cebCap1.NW_016107755v1     257633 5 -   1771730 TGCTG
i cebCap1.NW_016107755v1   I 319 C 0
s aotNan1.NW_018509740v1     335466 5 -    457564 ggctg
i aotNan1.NW_018509740v1   C 0 I 309
s micMur3.chr6               170216 5 + 123392446 TGCTG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     637224 5 +    730504 TGCTG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           144049 5 +  18854210 ttctt
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e canFam3.chr35            26253994 149 +  26524999 I
e colAng1.NW_012115566v1    2666485 3978 -   3067355 M
e manLeu1.NW_012099233v1     216730 6334 +    290775 I

a score=56655.000000
s hg38.chr6_GL000254v2_alt   920007 6 +   4827813 AAAGAA
s panTro5.chr6             29882928 6 + 175400573 AAAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117245 6 + 173848474 AAAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916181 6 +   6154872 AAAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630432 6 + 122973662 AAAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114822 6 + 172585720 AAAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777900 6 - 170955103 AAAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825431 6 -   2996164 AAAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574917 6 +    766320 AAAGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29031413 6 -  71996105 AAAGAA
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      44879 6 +    132061 AAAGAA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     257638 6 -   1771730 AAAGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     335780 6 -    457564 AAAGAA
i aotNan1.NW_018509740v1   I 309 C 0
s micMur3.chr6               170221 6 + 123392446 AAAGAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     637229 6 +    730504 AAAGAA
i proCoq1.NW_012152574v1   C 0 I 76
s otoGar3.GL873550           144054 6 +  18854210 gacaca
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e canFam3.chr35            26253994 149 +  26524999 I
e colAng1.NW_012115566v1    2666485 3978 -   3067355 M
e manLeu1.NW_012099233v1     216730 6334 +    290775 I

a score=302918.000000
s hg38.chr6_GL000254v2_alt   920013 47 +   4827813 ATGAGCAGCTCCCAGGGTGATACAGGG--------TGGTTTCACTTCTTGGACAC
s panTro5.chr6             29882934 47 + 175400573 ATGAGCAGCTCCCAGGGTGATACAGGG--------TGGTTTCACTTCTTGGACAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117251 47 + 173848474 ATGAGCAGCTCCCAGGGTGATACAGGG--------TGGTTTCACTTCTTGGACAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916187 47 +   6154872 ATGAGCAGTTCCCAGGGTGATACAGGG--------TGGTTTCACTTCTTGGACAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630438 47 + 122973662 ATGAGCAGCTCCCAGGGTGATACAGGG--------TGGTTTCACTTCTAGGACAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114828 47 + 172585720 ATGAGCAGCTCCCAGGGTGACACAGGG--------TAGTTTCACTTCTTGGACAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777906 47 - 170955103 ATGAGCAGCTCCCAGGGTGACACAGGG--------TAGTTTCACTTCTTGGACAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825437 47 -   2996164 ATGAGCAGCTCCCAGGGTGACACAGGG--------TAGTTTCACTTCTTGGACAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574923 46 +    766320 AAGAGCAGCTCCCAGGGTGACACA-GG--------TAGTTTCACTTCTTGGACAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29031419 47 -  71996105 ATGAGCAGCTCCCAGGGTGACACAGGG--------TAGTTTCACTTCTTGGACAC
i chlSab2.chr17            C 0 C 0
s calJac3.chrUn_GL286223      44885 45 +    132061 ATGAGCAG--CCCACGGTGATACAGGG--------TGGATTCACTTCTTGGACAC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     257644 45 -   1771730 ATGAGCAG--CCCATGGTGATACAGGG--------TGGTTTCACTTCTTGGACAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     335786 45 -    457564 ATGAGCAG--CCCACGGTGATACAGGG--------TGGTTTCACTTCTTGGACAC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               170227 45 + 123392446 --GTGGCCAGCTCTGACTGATACAGGA--------TGGTTTCACCTCTTGAACAC
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           144060 52 +  18854210 --gagtctcactttgacaccctcagtagagtgctgtggcatcacagctcgca-gc
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637235 76 +    730504 I
e canFam3.chr35            26253994 149 +  26524999 I
e colAng1.NW_012115566v1    2666485 3978 -   3067355 M
e manLeu1.NW_012099233v1     216730 6334 +    290775 I

a score=8281.000000
s hg38.chr6_GL000254v2_alt   920060 1 +   4827813 A
s panTro5.chr6             29882981 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117298 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916234 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630485 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114875 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777953 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825484 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574969 1 +    766320 A
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29031466 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1     257689 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     335831 1 -    457564 A
i aotNan1.NW_018509740v1   C 0 I 1
s micMur3.chr6               170272 1 + 123392446 A
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           144112 1 +  18854210 a
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637235 76 +    730504 I
e canFam3.chr35            26253994 149 +  26524999 I
e calJac3.chrUn_GL286223      44930 0 +    132061 C
e colAng1.NW_012115566v1    2666485 3978 -   3067355 M
e manLeu1.NW_012099233v1     216730 6334 +    290775 I

a score=12330.000000
s hg38.chr6_GL000254v2_alt   920061 2 +   4827813 TC
s panTro5.chr6             29882982 2 + 175400573 TC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117299 2 + 173848474 TC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916235 2 +   6154872 TC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630486 2 + 122973662 TC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114876 2 + 172585720 TC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777954 2 - 170955103 TC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825485 2 -   2996164 TC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574970 2 +    766320 TC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29031467 2 -  71996105 TC
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1     257690 2 -   1771730 TC
i cebCap1.NW_016107755v1   C 0 I 1
s micMur3.chr6               170273 2 + 123392446 TC
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           144113 2 +  18854210 ac
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637235 76 +    730504 I
e canFam3.chr35            26253994 149 +  26524999 I
e aotNan1.NW_018509740v1     335832 1 -    457564 I
e calJac3.chrUn_GL286223      44930 0 +    132061 C
e colAng1.NW_012115566v1    2666485 3978 -   3067355 M
e manLeu1.NW_012099233v1     216730 6334 +    290775 I

a score=13695.000000
s hg38.chr6_GL000254v2_alt   920063 4 +   4827813 TACA
s panTro5.chr6             29882984 4 + 175400573 TACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117301 4 + 173848474 TACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916237 4 +   6154872 TACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630488 4 + 122973662 TACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114878 4 + 172585720 TACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777956 4 - 170955103 TACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825487 4 -   2996164 TACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574972 4 +    766320 TACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29031469 4 -  71996105 TACA
i chlSab2.chr17            C 0 C 0
s micMur3.chr6               170275 4 + 123392446 CACA
i micMur3.chr6             C 0 I 43
s otoGar3.GL873550           144115 1 +  18854210 c---
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637235 76 +    730504 I
e canFam3.chr35            26253994 149 +  26524999 I
e aotNan1.NW_018509740v1     335832 1 -    457564 I
e cebCap1.NW_016107755v1     257692 1 -   1771730 I
e calJac3.chrUn_GL286223      44930 0 +    132061 C
e colAng1.NW_012115566v1    2666485 3978 -   3067355 M
e manLeu1.NW_012099233v1     216730 6334 +    290775 I

a score=791765.000000
s hg38.chr6_GL000254v2_alt   920067 206 +   4827813 CTGAGCTCTATTCCTGG-------------------------CAATACCTGATGTTCCCAT-ACC--CCAGAtttc---------------------------------tttattttattttgagacggagttttgctcttcttgcccaggctggagtgcaatggcgggatcttggctcaccgcaatctccgcctcctgggttcaagggattaccctgcctcagcctcccgagtagctgggattacaggcgcacgccaccatgccca
s panTro5.chr6             29882988 206 + 175400573 CTGAGCTCTATTCCTGG-------------------------CAATACCTGATGTTCCCAT-ACC--CCAGAtttc---------------------------------tttattttattttgagacggagttttgctcttcttgcccaggctggagtgcaatggcgggatcttggctcaccgcaatctccgcctcctgggttcaagggattaccctgcctcagcctcccgagtagctgggattacaggcgcatgccaccatgccca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117305 206 + 173848474 CTGAGCTCTATTCCTGG-------------------------CAATACCTGATGTTCCCAT-ACC--CCAGAtttc---------------------------------tttattttattttgagacggagttttgctcttcttgcccaggctggagtgcaatggcgggatcttggctcaccgcaatctccgcctcctgggttcaagggattaccctgcctcagcctcccgagtagctgggattacaggcgcacgccaccatgccca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916241 206 +   6154872 CTGAGCTCTATTCCTGG-------------------------CAATACCTGATGTTCCCAT-ACC--CCAGAtttc---------------------------------tttattttattttgagacagagttttgctcttcttgcccaggctggagtgcaatggtgggatcttggctcaccgcaatttccgcctcccgggttcaagggattaccctgcctcagcctcccgagtagctgggattacaggcgcacgccaccatgccca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630492 211 + 122973662 CTGAGCTCTATTCCTGG-------------------------CAATACCTGATGTTCCCAT-ACC--CCAGAtttc----------------------------tttattttattttattttgtgacggagttttgctcttcttgcccaggctggagtgcagtggcgggatctcggctcaccacaacctccacctcctgggttcaagggattgccctgcctcagcctcccgagtagctgggattacaggcgcacgccaccatgccta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30114882 225 + 172585720 CCAAGCTCTATTCCTGG-------------------------CAATACCTGGTGTTCCTAT-ACC--CCAGATTTCtttattttattcta-------------ttttattttattttattttgagacggagtttcgcttttgttgcccaggctggagtgcaatggcgcaatctcggctcactgcaatctccgcctcc-gggttcaaaggattctcctgcctcagcctcccaagtagctgggattacaggtgcatgccagcacgcctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29777960 225 - 170955103 CCAAGCTCTATTCCTGG-------------------------CAATACCTGGTGTTCCTAT-ACC--CCAGATTTCtttattttattcta-------------ttttattttattttattttgagacggagtttcgcttttgttgcccaggctggagtgcaatggcgcaatctcggctcactgcaatctccgcctcc-gggttcaaaggattctcctgcctcagcctcccaagtagctgggattacaggtgcatgccagcacgcctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825491 212 -   2996164 CCAAGCTCTATTCCTGG-------------------------CAATACCTGGTGTTCCTAT-ACC--CCAGATTTCtttattt-----ta-------------ttttattttattttattttgagacggagtttcgcttttgttgcccaggctggagtgcaatggcgcaatctcggctcaccgcaatctccgcctcc-gggttcaaaggattctcctgcctcagcctcccaagtagctgggattacaggtgcatgcca--------g
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     574976 225 +    766320 CCAGGTTCTATTCCTGG-------------------------CAATACCTGGTGTTCCTAT-ACC--CCAGATTTCtttattttatttta-------------ttttattttattttattttaagacggagtttcgcttttgttgcccaggctggaatgcaatggcgcgatctcggctcaccgcaatctccgcctcc-gggttcaaaggattctcctgcctcagcctcccaagtagctgggattacaggtgcacgccagcacgcctg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29031473 238 -  71996105 CCAAGCTCTATTCCCGG-------------------------CAATACCTGGTGTTCCTAT-ACC--CCAGATTTCtttattttattttattttattttatttttttattttattttattttgagacagagtttctcttttgttgcccaggctggaatgcaatggcacaatctcggctcaccgcaatctccgcctcc-gggttcaaaggattctcctgcctcagcctcccaagtagctgggattacaggtgcacgccagcatgcctg
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550           144116 242 +  18854210 tcaaactctagtgcttaagcgattctcttgcctcagcctccccagtagctggggctacagtcacctgccacaatgcccacctattttttg-------------------tttttgtttttttgagac--agtctcacta-tgccgtcctcagtagggtacagtggcg---tcacagctcacagcaacctccaactcttgggcttaagcaattctctggcctcagcctcccaagtagctgggactacaggtgcccgccacaatgccca
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               170279  43 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637235  76 +    730504 I
e canFam3.chr35            26253994 149 +  26524999 I
e aotNan1.NW_018509740v1     335832   1 -    457564 I
e cebCap1.NW_016107755v1     257692   1 -   1771730 I
e calJac3.chrUn_GL286223      44930   0 +    132061 C
e colAng1.NW_012115566v1    2666485 3978 -   3067355 M
e manLeu1.NW_012099233v1     216730 6334 +    290775 I

a score=58894.000000
s hg38.chr6_GL000254v2_alt   920273 10 +   4827813 gctaattttt
s panTro5.chr6             29883194 10 + 175400573 gctaattttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117511 10 + 173848474 gctaattttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916447 10 +   6154872 gctaattttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630703 10 + 122973662 gctaattttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30115107 10 + 172585720 gctaattttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29778185 10 - 170955103 gctaattttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825703 10 -   2996164 gctaattttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     575201 10 +    766320 gctaattttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29031711 10 -  71996105 gctaattttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     223064 10 +    290775 gctaattttt
i manLeu1.NW_012099233v1   I 6334 C 0
s otoGar3.GL873550           144358 10 +  18854210 gctatttttt
i otoGar3.GL873550         C 0 I 1472
e micMur3.chr6               170279 43 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637235 76 +    730504 I
e canFam3.chr35            26253994 149 +  26524999 I
e aotNan1.NW_018509740v1     335832  1 -    457564 I
e cebCap1.NW_016107755v1     257692  1 -   1771730 I
e calJac3.chrUn_GL286223      44930  0 +    132061 C
e colAng1.NW_012115566v1    2666485 3978 -   3067355 M

a score=9285.000000
s hg38.chr6_GL000254v2_alt   920283 2 +   4827813 gt
s panTro5.chr6             29883204 2 + 175400573 gt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117521 2 + 173848474 gt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916457 2 +   6154872 gt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630713 2 + 122973662 gt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30115117 2 + 172585720 gt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29778195 2 - 170955103 gt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825713 2 -   2996164 gt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     575211 2 +    766320 gt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29031721 2 -  71996105 gc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     223074 2 +    290775 gt
i manLeu1.NW_012099233v1   C 0 C 0
e micMur3.chr6               170279 43 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637235 76 +    730504 I
e canFam3.chr35            26253994 149 +  26524999 I
e otoGar3.GL873550           144368 1472 +  18854210 I
e aotNan1.NW_018509740v1     335832 1 -    457564 I
e cebCap1.NW_016107755v1     257692 1 -   1771730 I
e calJac3.chrUn_GL286223      44930 0 +    132061 C
e colAng1.NW_012115566v1    2666485 3978 -   3067355 M

a score=584400.000000
s hg38.chr6_GL000254v2_alt   920285 114 +   4827813 atttttagtagaggcagggtttctccatgttggtcaggctggtcttgaactcccaacctcaggtaatctgcccgcttcggcctcccaaagtgctgggattacaggcgtgag----cgg
s panTro5.chr6             29883206 114 + 175400573 atttttagtagaggcagggtttctccatgttggtcaggctggtcttgaactcccaacctcaggtaatctgcccgcttcggcctcccaaagtgctgggattacaggcgtgag----cgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117523 114 + 173848474 atttttagtagaggcagggtttctccatgttggtcaggctggtcttgaactcccaacctcaggtaatctgcccgcttcggcctcccaaagtgctgggattacaggcgtgag----cgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916459 114 +   6154872 atttttaccagaggcagggtttctccatgttggtcaggctggtctcgaactcccaacctcaggtaatctgcccgcttcggcctcccaaagtactgggattacaggcgtgag----TAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630715 118 + 122973662 atttttagtagagacagggtttctccatgttggtcaggctgatctcgaactcccaacctcaggtaatctgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30115119 114 + 172585720 atttttagtagagacagggttgctccatgttggtcaggctggtctcgaactcccgatctcaggtaatctgcctgccttggcctcccaaagtgctggcattacaggcatgag----cca
i rheMac8.chr4             C 0 I 4
s macFas5.chr4             29778197 114 - 170955103 atttttagtagagacagggttgctccatgttggtcaggctggtctcgaactcccgatctcaggtaatctgcctgccttggcctcccaaagtgctggcattacaggcatgag----cca
i macFas5.chr4             C 0 I 4
s macNem1.NW_012011356v1    2825715 114 -   2996164 atttttagtagagacagggttgctccatgttggtcaggctggtctcgaactcccgacctcaggtaatctgcctgccttggcctcccaaagtgctggcattacaggcatgag----cca
i macNem1.NW_012011356v1   C 0 I 4
s cerAty1.NW_012002711v1     575213 114 +    766320 atttttagtagagacagggttgctccatgttggtcaggctggtctcgaactcccgacctcaggtaatctgcctgcctcggcctcccaaagtgctgggattacaggcatgag----cca
i cerAty1.NW_012002711v1   C 0 I 4
s chlSab2.chr17            29031723 114 -  71996105 atttttagtagagacagggttgctccatgttggtcaggctggtctcgaactcccgacctcaggtaatctgcctgcctcggcctcccaaagtgctgggattacaggcatgag----cca
i chlSab2.chr17            C 0 I 4
s manLeu1.NW_012099233v1     223076 114 +    290775 atttttagtagagacagggttgctccatgttggtcaggctggtctcgaactcccgacctcaggtaatctgcctgcctcggcctcccaaagtgctgggattacaggcatgag----cca
i manLeu1.NW_012099233v1   C 0 I 4
s otoGar3.GL873550           145840 109 +  18854210 attttt--tagaaacaaggt--ctcactctaactcaggttggtctcaaactcctgagct-aggcaatccacccaccttggcgtcccagagtgctaggattatagatgccac----cat
i otoGar3.GL873550         I 1472 C 0
e micMur3.chr6               170279  43 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637235  76 +    730504 I
e canFam3.chr35            26253994 149 +  26524999 I
e aotNan1.NW_018509740v1     335832   1 -    457564 I
e cebCap1.NW_016107755v1     257692   1 -   1771730 I
e calJac3.chrUn_GL286223      44930   0 +    132061 C
e colAng1.NW_012115566v1    2666485 3978 -   3067355 M

a score=41470.000000
s hg38.chr6_GL000254v2_alt   920399 6 +   4827813 gcccag
s panTro5.chr6             29883320 6 + 175400573 gcccag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117637 6 + 173848474 gcccag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916573 6 +   6154872 GCCCGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630833 6 + 122973662 gcccgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30115237 6 + 172585720 gcccgg
i rheMac8.chr4             I 4 C 0
s macFas5.chr4             29778315 6 - 170955103 gcccgg
i macFas5.chr4             I 4 C 0
s macNem1.NW_012011356v1    2825833 6 -   2996164 gcccgg
i macNem1.NW_012011356v1   I 4 C 0
s cerAty1.NW_012002711v1     575331 6 +    766320 gcccgg
i cerAty1.NW_012002711v1   I 4 C 0
s chlSab2.chr17            29031841 6 -  71996105 gcccgg
i chlSab2.chr17            I 4 C 0
s manLeu1.NW_012099233v1     223194 6 +    290775 gcccgg
i manLeu1.NW_012099233v1   I 4 C 0
s colAng1.NW_012115566v1    2670553 6 -   3067355 GCCCAG
i colAng1.NW_012115566v1   M 3978 C 0
s otoGar3.GL873550           145949 6 +  18854210 gcccag
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               170279 43 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637235 76 +    730504 I
e canFam3.chr35            26253994 149 +  26524999 I
e aotNan1.NW_018509740v1     335832 1 -    457564 I
e cebCap1.NW_016107755v1     257692 1 -   1771730 I
e calJac3.chrUn_GL286223      44930 0 +    132061 C

a score=25726.000000
s hg38.chr6_GL000254v2_alt   920405  7 +   4827813 cc-----------------------------------------------------------CCTAT
s panTro5.chr6             29883326  7 + 175400573 cc-----------------------------------------------------------CCTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117643  7 + 173848474 cc-----------------------------------------------------------CCTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916579  7 +   6154872 CC-----------------------------------------------------------CCTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630839  7 + 122973662 cc-----------------------------------------------------------CCTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30115243  7 + 172585720 cc-----------------------------------------------------------CCTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29778321  7 - 170955103 cc-----------------------------------------------------------CCTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825839  7 -   2996164 cc-----------------------------------------------------------CCTAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     575337  7 +    766320 cc-----------------------------------------------------------CCTAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29031847  7 -  71996105 cc-----------------------------------------------------------CCTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     223200  7 +    290775 cc-----------------------------------------------------------CCTAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2670559  7 -   3067355 CC-----------------------------------------------------------CCTAT
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           145955 66 +  18854210 ccCATCATTCACATCTTGAACACATTCTCATCACACTCCATGCCCTGCAAAATCTGATGCTCCTAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26254143  7 +  26524999 CT-----------------------------------------------------------CCTAC
i canFam3.chr35            I 149 C 0
e micMur3.chr6               170279 43 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637235 76 +    730504 I
e aotNan1.NW_018509740v1     335832  1 -    457564 I
e cebCap1.NW_016107755v1     257692  1 -   1771730 I
e calJac3.chrUn_GL286223      44930  0 +    132061 C

a score=231672.000000
s hg38.chr6_GL000254v2_alt   920412 31 +   4827813 ACCCCAGATTTCTGCAAGTGGCAACACCACT
s panTro5.chr6             29883333 31 + 175400573 ACCCCAGATTTCTGCAAGTGGCAACACCACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117650 31 + 173848474 ACCCCAGATTTCTGCAAGTGGCAACACCACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916586 31 +   6154872 ACCCCAGATTTCTGCAAGTGGCAACACTGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630846 31 + 122973662 ACCCCAGATTTCTGCAAGTGGCAACACCACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30115250 31 + 172585720 ACCCCAGATTTCTGCAAGTGGCAACAGCACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29778328 31 - 170955103 ACCCCAGATTTCTGCAAGTGGCAACAGCACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825846 31 -   2996164 ACCCCAGATTTCTGCAAGTGGCAACAGCACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     575344 31 +    766320 ACCCCAGATTTCTGCAAGTGGCAACAGCACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29031854 31 -  71996105 ACCCCAGATTTCTGCAAGTGGCAACAGCACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     223207 31 +    290775 ACCCCAGATTTCTGCAAGTGGCAACAGCACT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2670566 31 -   3067355 ACCCCAGATTTCTTCAAGTGGCACCAGCACT
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     637311 31 +    730504 ACCCTAGATTTCTGTACATGGAAACACTGCG
i proCoq1.NW_012152574v1   I 76 C 0
s otoGar3.GL873550           146021 27 +  18854210 ACCCCATATTTCTGTACATGGCAACAT----
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26254150 30 +  26524999 -ACCCAAGTTTCTGTAAAGGGCCACAGGACT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               170279 43 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e aotNan1.NW_018509740v1     335832  1 -    457564 I
e cebCap1.NW_016107755v1     257692  1 -   1771730 I
e calJac3.chrUn_GL286223      44930  0 +    132061 C

a score=379720.000000
s hg38.chr6_GL000254v2_alt   920443 43 +   4827813 GGCTTC-ATTTTGCTGGTGGCCCCTCTGGCCTTCCCTTGTATAT
s panTro5.chr6             29883364 43 + 175400573 GGCTTC-ATTTTGCTGGTGGCCCCTCTGGCCTTCCCTTGTATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117681 43 + 173848474 GGCTTC-ATTTTGCTGGTGGCCCCTCTGGCCTTCCCTTGTATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916617 43 +   6154872 GGCTTC-ATTTTGCTGGTGGCCCCTCTGGCCTTCCCTTGTATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630877 43 + 122973662 GGCTTC-ATTTTGCTGGTGGCCCCTCTCGCGTTCCCTTGTATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30115281 43 + 172585720 GGCTTC-ATTTTGCTGGTGGCCCCTCTCTACTTCCCTTGTATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29778359 43 - 170955103 GGCTTC-ATTTTGCTGGTGGCCCCTCTCTACTTCCCTTGTATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825877 43 -   2996164 GGCTTC-ATTTTGCTGGTGGCCCCTCTCTACTTCCCTTGTATAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     575375 43 +    766320 GGCTTC-ATTTTGCTGGTGGCCCCTCTCTACTTCCCTTGTATAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29031885 43 -  71996105 GGCTTC-ATTTTGCTGGTGGCCCCTCTCTACTTCCCTTGTATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     223238 43 +    290775 GGCTTC-ATTTTGCTGGTGGCCCCTCTCTACTTCCCTTGTATAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2670597 43 -   3067355 GGCTTC-ATTTTGCTGGTGGCCCCTCTCCACTTCCTTTGTATAT
i colAng1.NW_012115566v1   C 0 C 0
s micMur3.chr6               170322 43 + 123392446 GGCTTC-ATTTTGCTGGTGGCCCCTCTCCCCTTCCCCTGTGTAT
i micMur3.chr6             I 43 C 0
s proCoq1.NW_012152574v1     637342 43 +    730504 GGCTTC-GTTTTGCTGGTGGCCCCTCTCCCCTTCCTCTGTATAC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           146048 42 +  18854210 TGCATC-ATTTAGCTGATGG-CCCTCTCCCCTTCCCCTGTATAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26254180 37 +  26524999 GGCTTCTTTTTTACTGGTGGCCCCTC-------CACTTGTTTTC
i canFam3.chr35            C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e aotNan1.NW_018509740v1     335832  1 -    457564 I
e cebCap1.NW_016107755v1     257692  1 -   1771730 I
e calJac3.chrUn_GL286223      44930  0 +    132061 C

a score=25772.000000
s hg38.chr6_GL000254v2_alt   920486 2 +   4827813 AT
s panTro5.chr6             29883407 2 + 175400573 AT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117724 2 + 173848474 AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916660 2 +   6154872 AT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630920 2 + 122973662 AT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30115324 2 + 172585720 AT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29778402 2 - 170955103 AT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825920 2 -   2996164 AT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     575418 2 +    766320 AT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29031928 2 -  71996105 AT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     223281 2 +    290775 AT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2670640 2 -   3067355 AT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      44930 2 +    132061 AT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     257693 2 -   1771730 AT
i cebCap1.NW_016107755v1   I 1 C 0
s micMur3.chr6               170365 2 + 123392446 AT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     637385 2 +    730504 AT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           146090 2 +  18854210 GT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26254217 2 +  26524999 AT
i canFam3.chr35            C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e aotNan1.NW_018509740v1     335832 1 -    457564 I

a score=687580.000000
s hg38.chr6_GL000254v2_alt   920488 52 +   4827813 CACCTTTGCCCAAAGACCATGTCAGCCAAGGGACTGCTC-TCACAGCTCCAGG
s panTro5.chr6             29883409 52 + 175400573 CACCTTTGCCCAAAGACCATGTCAGCCAAGGGACTGCTC-TCACAGCTCCAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117726 52 + 173848474 CACCTTTGCCCAAAGACCATGTCAGCCAAGGGACTGCTC-TCACAGCTCCAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916662 52 +   6154872 CACCTTTGCCCAAAGACCACGTCAGCCAAGGGACTGCTC-TCACAGCTCCAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630922 52 + 122973662 CACCTTTGTCCAAAGACCATGTCAGCCAAGGGACTGCTC-TCACAGCTCCAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30115326 52 + 172585720 CACCTTTGCCCAAAGACCACATCAGCCAAGGGACTGCTC-TCACAGCTCCAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29778404 52 - 170955103 CACCTTTGCCCAAAGACCACATCAGCCAAGGGACTGCTC-TCACAGCTCCAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825922 52 -   2996164 CACCTTTGCCCAAAGACCACATCAGCCAAGGGACTGCTC-TCACAGCTCCAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     575420 52 +    766320 CACCTTTGCCCAAAGACCACATCAGCCAAGGGACTGCTC-TCACAGCTCCAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29031930 52 -  71996105 CACCTTTGCCCAAAGACCACATCAGCCAAGGGACTGCTG-TCACAGGTCCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     223283 52 +    290775 CACCTTTGCCCAAAGACCACATCAGCCAAGGGACTGCTC-TCACAGCTCCAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2670642 52 -   3067355 CATCTTTGCCCAAAGACCATGTCAGCCAAGGGAGTGCTC-TCACAGCTCCAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      44932 52 +    132061 CACCTTTGCCCAAAGACCATGTCAGCCAAATGACTGCTC-TCACAACTCCAGG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     257695 52 -   1771730 CACCTTTGCCCAAAGACCATGTCAGCCAAATGACTGCTC-TCACAGCTCCAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     335833 52 -    457564 CACCTTTGCCCAAAGACCGTGTCAGCCAAGTGACTGCTC-TCACAGCTCCAGG
i aotNan1.NW_018509740v1   I 1 C 0
s micMur3.chr6               170367 53 + 123392446 CACCTTTGCCCAAAGACCATAGCATCCCAGGGACTGCTCCCCACGGCTCCAGG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     637387 53 +    730504 CACCTTTGCCCAAAGACCATGGCATCCAAGGGACTACTCACCACAGCTCCAGG
i proCoq1.NW_012152574v1   C 0 I 428
s otoGar3.GL873550           146092 53 +  18854210 CACTTTTGCCTAAAGACCATGCCATCCAAGAGACTGCTCACCACAGCTGCAGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26254219 50 +  26524999 CACCTTTG--CAAAGACCGGGTAGTCCTTGGGACAGCTC-CCCCAGCTCCAGT
i canFam3.chr35            C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I

a score=333877.000000
s hg38.chr6_GL000254v2_alt   920540 29 +   4827813 AATCCTCCCCTTTCAGGAAATTTGAGGCA
s panTro5.chr6             29883461 29 + 175400573 AATCCTCCCCTTTCAGGAAATTTGAGGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117778 29 + 173848474 AATCCTCCCCTTTCAGGAAATTTGAGGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916714 29 +   6154872 AATCCTCCCCTTTCAGGAAATTTGAGGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74630974 29 + 122973662 AATCCTCCCCTTTCAGGAAACTTGAGGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30115378 29 + 172585720 AATCCTCCCCTTTCAGGAGATTTGAGGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29778456 29 - 170955103 AATCCTCCCCTTTCAGGAGATTTGAGGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2825974 29 -   2996164 AATCCTCCCCTTTCAGGAGATTTGAGGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     575472 29 +    766320 AATCCTCCCCTTTCAGGAGATTTGAGGCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29031982 29 -  71996105 AATCCTCCCCTTTCAGGAGATTTGAGGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     223335 29 +    290775 AATCCTCCGCTTTCAGGAGATTTGAGGCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2670694 29 -   3067355 AATCCTCCCCTTTCAGGAGATTTGAGGCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      44984 29 +    132061 AATCCTCCCATTTCAGGAGATTTGAGGCA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     257747 29 -   1771730 AATCCTCCCATTTCAGGAGATTGGAGGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     335885 29 -    457564 AATCCTCTCATTTCAGGAGATTTGAGGCA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               170420 28 + 123392446 AATCT-GCCCTATCAGGAGGTTTGAGGCA
i micMur3.chr6             C 0 I 52
s otoGar3.GL873550           146145 29 +  18854210 AATCCAGCCCTTTCAGGAGACTTGAGGTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26254269 25 +  26524999 GGTCCACCCCT----GGAGACCTGAGGCA
i canFam3.chr35            C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637440 428 +    730504 I

a score=617944.000000
s hg38.chr6_GL000254v2_alt   920569 65 +   4827813 -GTTGAGGGC-ATGAAAGTAAATAAGCTGAGCTCATCAGAGGCCTTGTATTGtggtggttaaaagag
s panTro5.chr6             29883490 65 + 175400573 -GTTGAGGGC-ATGAAAGTAAATAAGCTGAGCTCATCAGAGGCCTTGTATTGtggtggttaaaagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117807 65 + 173848474 -GTTGAGGGC-ATGAAAGTAAATAAGCTGAGCTCATCAGAGGCCTTGTATTGtggtggttaaaagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916743 65 +   6154872 -GTTGAGGGC-ATGAAAGTAAATAAGCTGAGCTCATCAGAGGCCTTGTATTGtggtggttaaaagag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74631003 65 + 122973662 -GTTGAGGGC-ATGAAAGTAAATAAGCTGAGCTCTTCAGAAGCCTTGTATTGtagtggttaaaagag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30115407 65 + 172585720 -GTTGAGGGC-ATGAAAGTAAATAAGCTGAGCTCTTCAGAGGTCTTGTATTGtggtggttaaaagag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29778485 65 - 170955103 -GTTGAGGGC-ATGAAAGTAAATAAGCTGAGCTCTTCAGAGGTCTTGTATTGtggtggttaaaagag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2826003 65 -   2996164 -GTTGAGGGC-ATGAAAGTAAATAAGCTGAGCTCTTCAGAGGTCTTGTATTGtggtggttaaaagag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     575501 65 +    766320 -GTTGAGGGC-ATGAAAGTAAATAAGCTGAGCTCTTCAGACGTCTTGTATTGtggtggttaaaagag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29032011 65 -  71996105 -GTTGAGGGC-ATGAAAGTAAATAAGCTGAGTTCTTCAGAGGTCTTGTATTGtggtggttaaaagag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     223364 65 +    290775 -GTTGAGGGC-ATGAAAGTAAATAAGCTGAGCTCTTCAGACGTCTTGTATTGtggtggttaaaagag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2670723 65 -   3067355 -GTTGAGGGC-ATGAAAGTAAATAAGCTGAGCTCATCAGAGGTCTTGTATTGtggtggttaaaagag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      45013 65 +    132061 -GTTGAGGGC-ATGGAAGTAAATAAGTTGAGCTCATcagaggccttgtattgtggtggttacaagag
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     257776 65 -   1771730 -GTTGAGGGC-ATGGAAGTAAATAAGTTGAGCTCATCAgagaccttgtattgtggtggttacaagag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     335914 65 -    457564 -GTTGAGGGC-ATGGAAGTAAATAAGTTGAGCTCTTCAGAGACCTTgtattgtggtggttacaagaa
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           146174 64 +  18854210 -GCTGAAAGC-ATG-AGGTGAATAAAGAGAGCTCATCagaggctgtatagtgtggtggttacaagta
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26254294 35 +  26524999 GGAGGAGGATGATGACAGTGGGTGCAGTAAG-------------------------GGGT-------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               170448 52 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637440 428 +    730504 I

a score=806653.000000
s hg38.chr6_GL000254v2_alt   920634 67 +   4827813 ccagttctaggactagaaagcctggcttgaaatcccagctctgccactccctagtggtgtgacttta
s panTro5.chr6             29883555 67 + 175400573 ccagttctaggactagaaagcctggcttgaaatcccagctctgccactccctagtggtgtgacttta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117872 67 + 173848474 ccagttctaggactagaaagcctggcttgaaatcccagctctgccactccctagtggtgtgacttta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916808 67 +   6154872 ccagttctaggactagaaagcctggcttgaaatcccagctctgccactccctagtggtgtgatttta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74631068 67 + 122973662 ccagttctaggactagaaagcctggcttgaaatcgcagctctgccactccctagtggtgtgacttta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30115472 67 + 172585720 ccagttctaggactagaaagcctggcttgaaatcccagctcttccactccctagtggtgtgacttta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29778550 67 - 170955103 ccagttctaggactagaaagcctggcttgaaatcccagctcttccactccctagtggtgtgacttta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2826068 67 -   2996164 ccagttctaggactagaaagcctggcttgaaatcccagctcttccactccctagtggtgtgacttta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     575566 67 +    766320 ccagttctaggactagaaagcctggcttgaaatcccagctcttccactccctagtggtgtgacttta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29032076 67 -  71996105 ccagttctaggactagaaagcctggcttgaaatcccagctcttccactccctagtggtgtgacttta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     223429 67 +    290775 ccagttctaggactagaaagcctggcttgaaaccccagctcttccactccctagtggtgtgacttta
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2670788 67 -   3067355 ccagttctaggactagaaagcctggcttgaaatcccagctctgccactctctagtggtgtgacttta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      45078 67 +    132061 ccagttctaggactagaaagcctggcttgaaatcccagctccgccactccccagtggtgtgacttta
i calJac3.chrUn_GL286223   C 0 I 1
s cebCap1.NW_016107755v1     257841 67 -   1771730 ccagttctaggactagaaagactggcttgaaatcccagctccgccacttcccagtggtgtgactttA
i cebCap1.NW_016107755v1   C 0 M 5227
s aotNan1.NW_018509740v1     335979 67 -    457564 ccagttctaggactagaaagcctggcttgaaatcccagctccgccactccccagtggtgtgacttta
i aotNan1.NW_018509740v1   C 0 I 1
s micMur3.chr6               170500 67 + 123392446 ccagttctgggcctagaaagcctggcttggaatcccagctgtgccactccctggcggtgtgaccttg
i micMur3.chr6             I 52 I 1
s otoGar3.GL873550           146238 67 +  18854210 ccaattctggggctaggaagcctggcttgaaatcccagctactctactccctcatggtatgacattg
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26254329 61 +  26524999 CCAG---TGAAGATAGGAAACGTGGCTTCAAATTCCAGCCCTGCCCATCCCCCTCTGT---AGTTAA
i canFam3.chr35            C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637440 428 +    730504 I

a score=7085.000000
s hg38.chr6_GL000254v2_alt   920701 1 +   4827813 g
s panTro5.chr6             29883622 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117939 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916875 1 +   6154872 g
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74631135 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30115539 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29778617 1 - 170955103 g
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2826135 1 -   2996164 g
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     575633 1 +    766320 g
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29032143 1 -  71996105 g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     223496 1 +    290775 g
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2670855 1 -   3067355 g
i colAng1.NW_012115566v1   C 0 C 0
s micMur3.chr6               170568 1 + 123392446 a
i micMur3.chr6             I 1 C 0
s otoGar3.GL873550           146306 1 +  18854210 a
i otoGar3.GL873550         I 1 C 0
s canFam3.chr35            26254390 1 +  26524999 G
i canFam3.chr35            C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637440 428 +    730504 I
e aotNan1.NW_018509740v1     336046 1 -    457564 I
e cebCap1.NW_016107755v1     257908 5227 -   1771730 M
e calJac3.chrUn_GL286223      45145 1 +    132061 I

a score=1276612.000000
s hg38.chr6_GL000254v2_alt   920702 123 +   4827813 caagttcctttacctcttttgtacctcccttttctcacctgtaagatatgggtgataatagtttaatatttgttttgttgttgtgaggattaaagg---tgttaatgcaagtaaaccacttagaac
s panTro5.chr6             29883623 123 + 175400573 caagttcctttacctcttttgtacctcccttttctcacctgtaagatatgggtgataatagtttaatatttgttttgttgttgtgaggattaaagg---tgttaatgcaagtaaaccacttagaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30117940 123 + 173848474 caagttcctttacctcttttgtacctcccttttctcacctgtaagatatgggtgataatagtttaatatttgttttgttgttgtgaggattaaagg---tgttaatgcaagtaaaccacttagaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916876 123 +   6154872 caagttcctttacctcttttgtacctcccttttctcacctgtaagatatgggtgataatagtttgatatttgttttgttgttgtgaggattaaagg---tgttaatgcaagtaaaccacttagaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74631136 123 + 122973662 caagttcctttacctcttttgtaccttccttttctcacctgtaagatatgggtgataatagtttaatatttgttttgttattgtgaggattaaagg---tgttaatgcaagtaaaccacttagaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30115540 123 + 172585720 caagttcctttacctcttttgtacctcccttttctcccctgtaagatatgggtgataatagttcaatatttgttttgttgttgtgaggactaaagg---tgttaatgcaagtaaaccacttagaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29778618 123 - 170955103 caagttcctttacctcttttgtacctcccttttctcccctgtaagatatgggtgataatagttcaatatttgttttgttgttgtgaggactaaagg---tgttaatgcaagtaaaccacttagaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2826136 123 -   2996164 caagttcctttacctcttttgtacctcccttttctcccctgtaagatatgggtgataatagttcaatatttgttttgttgttgtgaggactaaagg---tgttaatgcaagtaaaccacttagaac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     575634 123 +    766320 caagttcctttacctcttttgtacctcccttttctcccctgtaagacatgggtgataatagttcaatatttgttttgttgttgtgaggattaaagg---tgttaatgcaagtaaaccacttagaac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29032144 123 -  71996105 caagttcctttacctcttttgtacctcccttttctcccctgtaagatatgggtgataatagttcaatatttgttttgttgttgtgaggattaaagg---tgttaatgcaagtaaaccacttagaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     223497 123 +    290775 caagttcctttacctcttttgtacctcccttttctcccctgtaagacatgggtgataatagttcaatatttgttttgttgttgtgaggattaaagg---tgttaatgcaagtaaaccacttagaac
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2670856 123 -   3067355 caagttcctttacctcttttgtacctcccttttctcccctgtaagatatgggtgataatagttcaatatttgttttgttgttgtgaggattaaagg---tgttaatgcaagtaaaccacttagaac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      45146 115 +    132061 taagttcttttacctctttta--------ccttctcatctgtaagacatgagggataatactttaattttttttttgttattgtgaggattaaagg---tatttatgtaagtaaaccccttagaac
i calJac3.chrUn_GL286223   I 1 C 0
s cebCap1.NW_016107755v1     263319 123 -   1771730 caagttcttttacctcttttgtacctcccttttctcgtctgtaagacatgagtgataatattttaatatttgttttgttattgtgaggattaaagg---tgtttatgcaagtaagccacttagaat
i cebCap1.NW_016107755v1   M 5227 C 0
s aotNan1.NW_018509740v1     336047 123 -    457564 caagttcttttaccacttttgtacctcccttttctcatctgtaagacatgagtgataatactttaatatttgttttgttattgtgaggattaaagg---tgtttatgcaagtaaaccacttagaac
i aotNan1.NW_018509740v1   I 1 I 6
s micMur3.chr6               170569 122 + 123392446 caagttacctcacctcttttgtacctctgtttccttatctgtaaaataagagtgttaatagtc-aata---gtcttgctattgtgaggattaagtgagctaataatgtaagtaaaccgcttagaac
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           146307 112 +  18854210 taagtgaccttacttcttttgtacctctgtttccttatctataaaataag-gtattaatattctaatatttgttttgctgttgtgagaattaaatg-------------agtaaaccacttagaac
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26254391  48 +  26524999 CCAGCTACTT---------------------------------------------------------------------------aggattaaatg---aattaatacatgtaaatcgcttacaac
i canFam3.chr35            C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637440 428 +    730504 I

a score=117056.000000
s hg38.chr6_GL000254v2_alt   920825 15 +   4827813 cacagcacatagaat
s panTro5.chr6             29883746 15 + 175400573 cacagcacatagaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30118063 15 + 173848474 cacagcacatagaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5916999 15 +   6154872 cacagcacatagaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74631259 15 + 122973662 cacggcacatagaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30115663 15 + 172585720 cacagcacatagaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29778741 15 - 170955103 cacagcacatagaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2826259 15 -   2996164 cacagcacatagaag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     575757 15 +    766320 cacagcacatagaag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29032267 15 -  71996105 cacagcacatagaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     223620 15 +    290775 cacagcacatagaag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2670979 15 -   3067355 cacagcacatagaag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      45261 15 +    132061 tgtgacacatagaag
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     263442 12 -   1771730 ggtgacacat---ag
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               170691 15 + 123392446 agcgacacacggaac
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           146419 15 +  18854210 aatggcatatggaat
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26254439 15 +  26524999 agcaccacatggaag
i canFam3.chr35            C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637440 428 +    730504 I
e aotNan1.NW_018509740v1     336170  6 -    457564 I

a score=1228605.000000
s hg38.chr6_GL000254v2_alt   920840 131 +   4827813 atctcagtaaggtggttagtttt----TT----------TTATTG--TT--GTTTTCAGAGATGCTGTGATTTCTCCAAAGTGGCTGTGATGGCTCGGCAGGCTCCTGACCCTCTCTGCTCCCACATGCCTCCACCCTCATCCTGATCT
s panTro5.chr6             29883761 131 + 175400573 atctcagtaaggtggttagtttt----TT----------TTATTG--TT--GTTTTCAGAGATGCTGTGATTTCTCCAAAGTGGCTGTGATGGCTCGGCAGGCTCCTGACCCTCTCTGCTCCCACATGCCTCCACCCTCATCCTGATCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30118078 130 + 173848474 atctcagtaaggtggttaG-TTT----TT----------TTATTG--TT--GTTTTCAGAGATGCTGTGATTTCTCCAAAGTGGCTGTGATGGCTCGGCAGGCTCCTGACCCTCTCTGCTCCCACATGCCTCCACCCTCATCCTGATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5917014 130 +   6154872 atctcagtaaggtggttaA-ATT----TT----------TTATTG--TT--GTTTTCAGAGATGCTGTGATTTCTCCAAAGTGGCTGTGATGGCTGGGCAGGCTCCTGACCCTCTCTGCTCCCACATGCCTCCACCCTCATCCTGATCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74631274 131 + 122973662 atctcagtaaggtggttaGTTTT----TT----------TTGTTG--TT--GTTTTCAGAGATGCTGTGATTTCTCCGAAGTGGCTGTGATGGCTCGGCAGGCTCCTGACCCTCTCTGCTCCCACATGCCTCCACCCTCATCCTGCTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30115678 132 + 172585720 atctcagtaaggtggttaGTTTT----TT---------GTTGCTG--TT--GTTTTCAGAGATGCTGTGATTTCTCCAAAGTGGCTGCGATGGCTCAGCAGGctcctgaccctccctgctcccacatgcctccaccctcatccTGATCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29778756 132 - 170955103 atctcagtaaggtggttaGTTTT----TT---------GTTGCTG--TT--GTTTTCAGAGATGCTGTGATTTCTCCAAAGTGGCTGCGATGGCTCAGCAGGCTCCTGACCCTCCCTGCTCCCACATGCTTCCACCCTCATCCTGATCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2826274 132 -   2996164 atctcagcaaggtggttagtttt----TT---------GTTGCTG--TT--GTTTTCAGAGATGCTGTGATTTCTCCAAAGTGGCTGCGATGGCTCAGCAGGctcctgaccctccctgctcccacatgcctccaccctcatccTGATCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     575772 135 +    766320 atctcagtaaggtggttaGTtttt-tgtt---------gttgttg--tt--gttTTCAGAGATGCTGTGATTTCTCCAAAGTGGCTGTGATGGCTCAGCAGGctcctgaccctccctgctcccacatgcctccaccctcatccTGATCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29032282 132 -  71996105 atctcagtaaggtggttagtttt----TT---------GTTGTTG--TT--GTTTTCAGAGATGCTGTGATTTCTCCAAAGTGGCTGTGATGGCTCGGCAGGctcctgaccctccctgctcccacatgcctccaccctcatccTGATCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     223635 135 +    290775 atctcagtaaggtggttagttttt-tgtt---------gttgttg--tt--gttTTCAGAGATGCTGTGATTTCTCCAAAGTGGCTGTGATGGCTTGGCAGGctcctgaccctccctgctcccacatgcctccaccctcatccTGATCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2670994 121 -   3067355 atctcagtaaggtggttattttt-----------------TGTTG--TT--GTTTTCAGAGATGCTGTGATTTCTCCAAAGTGGCTGTGATGGCTCGGCAAGCTCCTGACCCTCCCTGCTCCCACATG-------CCTCATCCTGATCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      45276 126 +    132061 atctcagtaaggtgattagttt-----tt----------ttatCG--TT--GTTTTCAGAGATGCTATGATTTCTCCAAAGGGGCTGTGA----CCGGCTGGCTCCTGACCCTCTCTGTTCCCACATGCCTCCATCTTCATTCTGATCT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     263454 122 -   1771730 atctcagtaaggtgatta---------tt----------TTACCG--TT--GTTTTCAGAGATGCTGTGATTTCTCCAAAGTGGCTGTGA----CCGGCTGGCTCCTGACCCTCTTTGCTCCCACATGCCTCCATCCTCATTCTGATCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     336176 125 -    457564 atctcagtaaggtgattagtt------tt----------ttatCG--TT--GTTTTCAGAGATGCTGTGATTTCTCCAAAGTGGCTGTGA----CCGACTGGCTCCTGACCCTCTCTGCTCCCACATGCCTCCATCCTCATTCTGATCT
i aotNan1.NW_018509740v1   I 6 C 0
s micMur3.chr6               170706 130 + 123392446 ctctcagtaaagtggttggattttgttTT----GTTTGGGTTTGG--TT--TTTTTCGGAGATGCTGTGATTTCTCCAGAGTGGCTTTGA----TTGGCTAGTTCCTGACCCTCCTTGCTCTC-CATCCCTCCATCCTAACCC------
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           146434 133 +  18854210 ctcctggtaaggtagctGGGTTTTGTCTTCTGGTTTTATTTTTTG--TTTGTTTTCTAGAGATGC--ACATTTCT-CAAAGTGGCTTTGA----TTAGCTAGTTCCTAACACTCTTTGCTCCT-GGTCCCTCCACCCTGACCT------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26254454 134 +  26524999 cgttctacaaggtgttttttttt----tt-GCTGTTTGATTGTTGGTTT--GTTTTCAGAGATGCTGTGATTCCTCCAAAGTGGCTTCAG----TTGGCTAGCTCTC--TCCCCTCTGCTCTC-CCTACCCTGCCCCCCA-CCTGCCCT
i canFam3.chr35            C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     637440 428 +    730504 I

a score=4935566.000000
s hg38.chr6_GL000254v2_alt   920971 415 +   4827813 CCCATCCAGCTTTTGACAGCTTGCTTGGTGCTGGACAATTGCACACATCTTACCACCCCCAAA--TCCTGCCCA--GAAG-CATCTTGTGCATAACTCTCCTACC----TGAATATGCAACAGGGAGAAAGAGCGTCCCAGGACATTTTAGGTTTTTGAAGAAAAAAAAACCCCTTTGGTAAAA---AGCCAGAGATCCACAGCGGCCACTTTTTCCATGGGATTGACCCCTGCAATCTTGACTTTCAACCACACAGCACCAGAGTAGCCAAACATTGCTTGTGTCCAAACGCTGGCTGCC-TTGAAGGGTGAAAGAATAAGCAGTTCCCAAACTCAGCTGACCTTAA--TGTCCTTCTAGCTCCTTACGCCCATCTCGGACAAAAGCAG-AAATGTATGTCTCAGTTGTGTTTCTAC--CCCTTG-------CTGCCCA
s panTro5.chr6             29883892 415 + 175400573 CCCATCCAGCTTTTGACAGCTTGCTTGGTGCTGGACAATTGCACACATCTTACCACCCCCAAA--CCCTGCCCA--GAAG-CATCTTGTGCATAACTCTCCTACC----TGAATATGCAACAGGGAGAAAGAGCGTCCCAGGACATTTTAGGTTTTTGAAGGAGAAAATCCCCACTTGGTAAAA---AGCCAGAGATCCACAGCGGCCACTTTTTCCAAGGGATTGACCCCTGCAATCTTGACTTTCAACCACACAGCACCAGAGTAGCCAAACATTGCTTGTGTCCAAACGCTGGCTGCC-TTGCAGGGTGAAAGAATAAGCAGTTCCCAAACTCAGCTGACCTCAA--TGTCCTTCTAGCTCCTTACGCCCATCTCGGACAAAAGCAG-AAATGTATGTCTCAGTTGTGTTTCTAC--CCCTTG-------CTGCCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30118208 415 + 173848474 CCCATCCAGCTTTTGACAGCTTGCTTGGTGCTGGACAATTGCACACATCTTACCACCCCCAAA--CCCTGCCCA--GAAG-CATCTTGTGCATAACTCTCCTACC----TGAATATGCAACAGGGAGAAAGAGCATCCCAGGACATTTTAGGTTTTTGAAGGAGAAAATCCCCACTTGGTAAAA---AGCCAGAGATCCACAGCGGCCACTTTCTCCAAGGGATTGACCCCTGCAATCTTGACTTTCAACCACACAGCACCAGAGTAGCCAAACATTGCTTGTGTCCAAACGCTGGCTGCC-TTGCAGGGTGAAAGAATAAGCAGTTCCCAAACTCAGCTGACCTCAA--TGTCCTTCTAGCTCCTTACGCCCATCTCGGACAAAAGCAG-AAATGTATGTCTCAGTTGTGTTTCTAC--CCCTTG-------CTGCCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5917144 415 +   6154872 CCCATCCAGCTTTTGACAGCTTGCTTGGTGCTGGACAGTTGCACACATCTTACCACCCCCAAA--CCCTGCCCA--GAAG-CATCTTGTGCGTAACTCTCCTACC----TGAATATGCAACAGGGAGAAAGAGTGTCCCAGGACATTTTAGGTTTTTGAAGGAGAAAATCCCCACTTGGTAAAA---AGCCAGAGATCCACAGCGGCCACTTTTTCCATGGGACTGACCCCTGCAATCTTGACTTTCAACCACACAGCACAAGAGTAGCCAAACATTGCTTGTGTCCAAACGCTGGCTGCC-TTGCAGGGTGAAAGAATAAGCAGTTCCCAAACTCAGCTGACTTTAA--TGTCCTTCTAGCTCCTTATGCCCATCTCGGACAAAAGCAG-AAATGTATGTCTCAATTGTGTTTCTAC--CCCTTG-------CTGCCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74631405 416 + 122973662 CCCATCCAGCTTTTGACAGCTTGCTTGGTGCTGGACAATTGCATACATCCTATCGCCCCCAAA--CCCTGCCCA--GAAG-CATCTTGTGCATAACTCTCCTACC----TGAATATGCATCAGGGAGAAAAAGTGTCCCAGGACATTTTAGGTTTTTGAAGGAGAAAATCCCCAGTTGGTAAAA---AGCCAGGGATCCACAGTGGCCACTTTTTCCATGGGATTCACCCCTGCAATCTTGACTTTCAGCCACACAGCACCAGAGTAGCCAAACACTGCTTGTGTCCAAAAGCTGGCTGCCTTTGCAGGGTGAAAGAATAAGCAGTTCCCAAACACAGCTGACCTTAG--TGTCCTTCTAGCTCCTTATGCCCATCTCGGACAAAAGCAG-AAATGTATGTCTCAGTTGTGTTTCTAC--CCCTTG-------CTGCCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30115810 417 + 172585720 CCCATCCAGCTTTTGACAGCTTGCTTAGTGCTGGACACTTGCATACATCCTACTGCCCCCAAA--CCCTGCCCA--GAAA-CATCTTGTGCATAACTCTCCTACC----TGAATATGCATCAGGGAGAAAGAGCGTCCCAGGACATTTTAGGTTTTTGAAGGAGAAAATCCCCACTTAGTAAAA---AGCCAGGGATCCACAGCGGCCACTTTTTCCATGGGATCCACCCGTGCAATCTTGACTTTCAACCACACAGCACCAGAGTAGCCAAGCATTGCTTGTGCCCAAATGCCAGCTGCC-TTGCAGGGTGAAAGAATAAGCAGTTCCCAGATTCAACTGACCATAATCTGTCCTTCTAGCTCCTTACACCCATCTCGGACAAAAGCAG-AAATGTATGTCTCAGTTGTGTTTCCAC--CCCTTG-------CTGCCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29778888 417 - 170955103 CCCATCCAGCTTTTGACAGCTTGCTTAGTGCTGGACACTTGCATACATCCTACTGCCCCCAAA--CCCTGCCCA--GAAA-CATCTTGTGCATAACTCTCCTACC----TGAATATGCATCAGGGAGAAAGAGCGTCCCAGGACATTTTAGGTTTTTGAAGGAGAAAATCCCCACTTAGTAAAA---AGCCAGGGATCCACAGCGGCCACTTTTTCCATGGGATCCACCCGTGCAATCTTGACTTTCAACCACACAGCACCAGAGTAGCCAAGCATTGCTTGTGCCCAAATGCCAGCTGCC-TTGCAGGGTGAAAGAATAAGCAGTTCCCAGATTCAACTGACCATAATCTGTCCTTCTAGCTCCTTACACCCATCTCGGACAAAAGCAG-AAATGTATGTCTCAGTTGTGTTTCCAC--CCCTTG-------CTGCCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2826406 417 -   2996164 CCCATCCAGCTTTTGACAGCTTGCTTAGTGCTGGACACTTGCATACATCCTACTGCCCCCAAA--CCCTGCCCA--GAAA-CATCTTGTGCATAACTCTCCTACC----TGAATATGCATCAGGGAGAAAGAGCGTCCCAGGACATTTTAGGTTTTTGAAGGAGAAAATCCCCACTTAGTAAAA---AGCCAGGGATCCACAGCGGCCACTTTTTCCATGGGATCCACCCGTGCAATCTTGACTTTCAACCACACAGCACCAGAGTAGCCAAGCATTGCTTGTGCCCAAATGCCAGCTGCC-TTGCAGGGTGAAAGAATAAGCAGTTCCCAGATTCAACTGACCATAATCTGTCCTTCTAGCTCCTTACACCCATCTCGGACAAAAGCAG-AAATGTATGTCTCAGTTGTGTTTCCAC--CCCTTG-------CTGCCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     575907 417 +    766320 CCCATCCAGCTTTTGACAGCTTGCTTAGTGCTGGACACTTGCATACATCCTACTGCCCCCAAA--CCCTGCCCA--GAAA-CATCTTGTGCATAACTCTCCTACC----TGAATATGCATCAGGGAGAAAGAGCGTCCCAGGACATTTTAGGTTTTTGAAGGAGAAAATCCCCACTTAGTAAAA---AGCCAGGGATCCACAGTGGCCACTTTTTCCATGGGATCCACCCCTGCAATCTTGACTTTCAACCACACAGCACCAGAGTAGCCAAGCATTGCTTGTGCCCAAATGCCAGCTGCC-TTGCAGGGTGAAAGAATAAGCAGTTCCCAGATTCAACTGACCATAATCTGTCCTTCTAGCTCCTTACACCCATCTCGGACAAAAGCAG-AAATGTATGTCTCAGTTGTGTTTCTAC--CCCTTG-------CTGCCCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29032414 417 -  71996105 CCCATCCAGCTTTTGACAGCTTGCTTAGTGCTGGACACTTGCATACATCCTACTGCCCCCAAA--CCCTGCCCA--GAAA-CATCTCGTGCATAACTCTCCTACC----TGAATATGCATCAGGGAGAAAGAGCGTCCCAGGACATTTTAGGTTTTTGAAGGAGAAAATCCCCACTTAGTCAAA---AGCCAGGGCTCCACAGCGGCCACTTTTTCCATGGGATCCACCCCTGCAATCTTGACTTTCAACCACACAGCACCAGAGTAGCCAAGCATTGCTTGTGCCCAAATGCCAGCTGCC-TTGCAGGGTGAAAGAATAAGCAGTTCCCAGATTCAACTGACCATAATCTGTCCTTCTAGCTCCTTACACCCATCTCAGACAAAAGCAG-AAATGTATGTCTCAGTTGTGTTTCTAC--CCCTTG-------CTGCCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     223770 417 +    290775 CCCATCCAGCTTTTGACAGCTTGCTTAGTGCTGGACACTTGCATACAGCCTACTGCCCCCAAA--CCCTGCCCA--GAAA-CATCTTGTGCATAACTCTCCTACC----TGAATATGCATCAGGGAGAAAGAGCGTCCCAGGACATTTTAGGTTTTTGAAGGAGAAAATCCCCACTTAGTAAAA---AGCCAGGGATCCACAGCGGCCACTTTTTCCATGGGATCCACCCCTGCAATCTTGACTTTCAACCACACAGCACCAGAGTAGCCAAGCATTGCTTGTGCCCAAATGCCAGCTGCC-TTGCAGGGTGAAAGAATAAGCAGTTCCCAGATTCAACTGACCATAATCTGTCCTTCTAGCTCCTTACACCCATCTCGGACAAAAGCAG-AAATGTATGTCTCAGTTGTGTTTCTAC--CCCTTG-------CTGCCCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2671115 417 -   3067355 CCCATCCAGCTTTTGACAGCTTGCTTAGTGCTGGACACTTACATACATCCTACCGCCCCCAAA--CCCTGCCCA--GAAA-CATCTTGTGCATAACTCTCCTACC----TGAATATGCATCAGGGAGAAAGAGTGTCCCAGGACATTTTAGGTTTTTGAAGGAGAAAATCCCCACTTAGTAAAA---AGTCAGGGATCCACAGCGGCCACTTTTTCCATGGGATCCACCCCTGCAATCTTGACTTTCAACCACACAGCACCAGAGTAGCCAAGCATTGCTTGTGCCCAAATGCCAGCTGCC-TTGCAGGGTGAAAGAATAAGCAATTCCCAAATTCAGCTGACCATAATCTGTCCTTCTAGCTCCTTACACCCATCTCGGACAAAAGCAG-AAATGTATGTCTCCGTTGTGTTTCTAC--CCCTTG-------CTGCCCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      45402 415 +    132061 CCCATCCAGC-TTTGACGGCTTGCTTGGTGCTAGACAATTACACACACCCTAATGCCCCCAAA--CCCTGCCTA--CAAA-CATCTTGTGCATAATTCTTCTACC----TGAATATGTGTCAGGGAGAAAGAGCATCCCAGGACATTTTAGGTTTTTGAAGGAGAAAATCCCCACTTGGTAAAA---AGCCAGGGATCCACAGCGGCCACTTTTTTCACGGGATTCACCCCACCAATCTTGACTTTCAACCATACGGCACCAGAGTAGCCAAATATTGCTTGTGCCAAAATGCTAGCTTCC-TTGCA-GGTGAAAGAATAAGTAGTTCCCAAACTCACCTGACCAGAATCTGTCCTTCTAACTTCTTATGCCTATCTCGGACAAGAGCAG-AAATGCATGTCTCAGCTGTGTTTCTAC--CTCTTG-------CTGCCCA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     263576 417 -   1771730 CCCATCCAGCTTTTGACAGCTTGCTTGGTGCTAGACAATTACACACACCCTAATGCCCCCAAA--CCCTGCCCA--CAAG-CATCTTGTGCATAATTCTTCTACC----TGAATATGGGTCAGGGAGAAAGAGCATCCCAGGACATTTTAGGTTTTTGAAGGAGAAAATCCCCACTTGGTAAAA---AGCCAGGGATCCACAGCGGCCACTTTTTTCATGGGATTCACCCCACCAATCTTGACTTTCAACCATACAGCACCAGAGTAGCCAAATATTGCTTGTGCCCAAATGCTAACTTCC-TTGCAGGGTGAAAGAATAAGCAGTTCCCAAACTCAGCTGACCAGAATCTGTCCTTCTAACTTCTTATGCCTATCTCGGACAAAAGCGG-AAATGCATGTCTCAGCTGTGTTTCTAC--ATCTTG-------CTGCCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     336301 414 -    457564 CCCATCCAGCTTTTGACAGCCTGCTTGGTGCTAGGCAATTACACACACCCTAATGCCCCCAAA--CCCTGCCCA--CAAG-CATCTTGTGCATAA---TTCTGCC----TGAATGTGCGTCAGGGAGAAAGAGCATCCCAGGACATTTTAGGTTTTTGAAGGAGAAAATCCCCACTTGGTAAAA---AGCCAGGGATCCACAGCGGCCACTTTTTTCATGGGATTCACCCCACCAATCTTGACTTTCAACCATACAGCACCAGAGTAGCCAAATACCGCTTGTGCTCAAATGCTAGCTTCC-TTGCGGGGTGAAAGAATAAGCAGTTCCCAAACTCAGCTGACCAGAATCTGTCCTTCTAACTTCTTATGCCTATCTCGGACAAAAGCAG-AAATGCATGTCTCAGCTGTGTTTCTAC--CTCCTG-------CTGTCCA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               170836 402 + 123392446 CCCATCCAGCTTTTGACAGTTGGCCTG-TGCCGGACA-TTGCAAGCACCCTGCCA----------CCCTGCCCA--GAAAGCATCTTCTGCATAA-TCTCCTACC----TGGATGTGCATCATGGAGGAAGAGTATCCCAGGATATTTTAGGTTCC-AAAGGAGTGAATCCCCATCTGAGAAAA---AGCCAGGGATCCACAGTGGCCC-CTTTTCCATGGGACTCACCCCTCTGACCTTGACTCTCAACCACACAGCTCCAGGGCAGCTAAA--CTGCTTGTGCCCAGACTCCAGCTGCC-TTGCAGGGAGAAAGAATAAGCAAGTCTCAGACTCAGCTGACCAGAATCTGTCCTTCTATC-CCCCACACCCATCCCGGACAAAAGCAA-GAATGTGTGTCTCAGCTATACTTTTAC--CCCTTg-------ctgccca
i micMur3.chr6             C 0 I 224
s proCoq1.NW_012152574v1     637868 413 +    730504 CCCATCCAGCTTTTGACGGTTGGCCTG-TGCTGGACA-TTGCAAGCACCCTGCCACCCCCAAACCCCCTGCCCA--GAAAGCATCTTCTACGTAACTCTGCTACC----CGGATGTGCATCATGGAGGAAGAGTATCCCAGGATATTTTAGGTTCCAAAAGGAGAGAATCCCCATTTGAGAAAA---AGCCAGGGATCCACAGTGGCTC-CTTTTCCATGGGATTCACCCCTCTGACCTTGACTCTCAACCACACAGCTCCAGGGCAGCTAAA--CTGCTTGTGCCCAAACTCCAGCTGCC-TTACAGGGAGAAAGAATAAGCAGACCCCAGACTCAGCTGACCAGAATCTGTCCTTCTAGC-CCCCGCGCCCATCTCCGACAAAAGCAG-GAATGTGTGTCTCAGTTCTGCTTCTAC--CCCTTG-------CTGCCC-
i proCoq1.NW_012152574v1   I 428 C 0
s otoGar3.GL873550           146567 409 +  18854210 CTTATCCAGCTTTTGACAGTTAGCTTG-----GACAA-TTGCAAGCACCCCATCACCC-------CCAAACCCA--GAAAGCATCTTGTGTGTAACTCTCCTACCTAGATGGATGTGCATTATGGAGGAAGAGCATCCCAGGATATTTTAGGTTCTGAAAGGAGGGAGTCCCCACTTGAG--AA---ATCCAGAAATCTACAGCAACCCTTTTTTCCATGGGATTCATCCATCTGACCTTGACTCTCAACAACATAGCTCCAGAATAGCCAAAT-CTGCTGGTGCCCAAACTCTAGGTGCC-TTGCAGGGAGAAAGAATAAGTAAGTCCCAGATTCAGCTGACCAGAATCTGTCCTTCCAGT-CCCTATACTCGTCTCAAACAAAAGCAG-AAATGTATGTCTCAGTTGTGCTTCTACTACCCTTg-------ctgccca
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26254588 386 +  26524999 GACCTCCAGC-TTTGACCAGTGGGCTAGTGCTGGATGATGTCAAGCATCCTTCGGCCCC---A--GCCTGATCAGGGAAG-TGTGTGGTGCCTGACTCTACCATC----TGCATGTACACGGTGGGGAAAGAGTGTCACAGGACACTTCAGGCCCGCAAGGAGAGACCCCCCCACCCCGGGGAAGGCAGTCAGACAG-TACAGATGCTGCCTCTCCCA--ACCTTGACC----TGACCTTGACGTTCACCCTCACAGCCCCAGGGCAGC---------------------------CTGCG-CTGCAG---GAAGGAATGAGCCACTC-CAGGCAAGGCTGACCC--ATCTGTCCTCCCAGCCCCATGGGCTCATCTCAGACAAAAGCAGAAAATGTACACCAAAGTCGAGTTCCTAG--CTCTTGGGCGGTTCTGCCCA
i canFam3.chr35            C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I

a score=48155.000000
s hg38.chr6_GL000254v2_alt   921386 4 +   4827813 ATAT
s panTro5.chr6             29884307 4 + 175400573 ATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30118623 4 + 173848474 ATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5917559 4 +   6154872 ATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74631821 4 + 122973662 ATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30116227 4 + 172585720 ATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29779305 4 - 170955103 ATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2826823 4 -   2996164 ATAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     576324 4 +    766320 ATAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29032831 4 -  71996105 ATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224187 4 +    290775 ATAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2671532 4 -   3067355 ATAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      45817 4 +    132061 ACAT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     263993 4 -   1771730 ACAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     336715 4 -    457564 ACAT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     638281 4 +    730504 ATAT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           146976 4 +  18854210 atat
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26254974 4 +  26524999 ATGT
i canFam3.chr35            C 0 I 949
e micMur3.chr6               171238 224 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I

a score=99406.000000
s hg38.chr6_GL000254v2_alt   921390 11 +   4827813 AAATTTTTgtg
s panTro5.chr6             29884311 11 + 175400573 AAATTTTTgtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30118627 11 + 173848474 AAATTTTTgtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5917563 11 +   6154872 AAATTTTTgtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74631825 11 + 122973662 GAATTTTTgtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30116231 11 + 172585720 AAATTTTTGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29779309 11 - 170955103 AAATTTTTGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2826827 11 -   2996164 AAATTTTTgtg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     576328 11 +    766320 AAATTTTTgtg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29032835 11 -  71996105 AAATTTTTgtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224191 11 +    290775 AAATTTTTgtg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2671536 11 -   3067355 AAATTTTTgtg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      45821 11 +    132061 AAATTTTTGGg
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     263997 11 -   1771730 AAATTTTTGGg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     336719 11 -    457564 AAATTTTTGGg
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     638285 11 +    730504 AATTTTTTGTG
i proCoq1.NW_012152574v1   C 0 I 731
s otoGar3.GL873550           146980  1 +  18854210 a----------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               171238 224 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e canFam3.chr35            26254978 949 +  26524999 I

a score=1264245.000000
s hg38.chr6_GL000254v2_alt   921401 139 +   4827813 ttgcccaatataattttttgtgacgatg----gaaatgttctgtatttgtgttgtctgatgagataaccactaactgtagtgctattgagcatttgaaacatggctagtgtaatcaatgaaccaaatttttaattttatttaa
s panTro5.chr6             29884322 139 + 175400573 ttgcccaatataactttttgtgacgatg----gaaatgttctgtatttgtgttgtctgatgagataaccactaactgtagtgctattgagcatttgaaacatggctagtgtaatcaatgaaccaaatttttaattttatttaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30118638 139 + 173848474 ttgcccaatataactttttgtgacgatg----gaaatgttctgtatttgtgttgtctgatgagataaccactaactgtagtgctattgagcatttgaaacatggctagtgtaatcaatgaaccaaatttttaattttatttaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5917574 139 +   6154872 ttgcccaatataattttttgtgacgatg----gaaaagttctgtatttgtgttgtctgatgagataaccactaactgtagtgctattgagcatttgaaacatggctagtgtaatcaatgaaccaaatttttaattttatttaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74631836 134 + 122973662 ttgcccaatataattttttgtgacgatg----gaaatgttctgtatttgtgttgtctgatgagataaccactagctgtagtgctatggagcatttgaaacatggctagtgtaatcaatgaaccaaattttta-----atttaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30116242 138 + 172585720 TTCCctaatataattttttgtgacgatg----taaatgttctgcatttgtgttgtctgatgagataaccactaactgtagtgctattgagcatttgaaacatggctagtgtaatcaagaaaccaaatttttaatgt-atttaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29779320 138 - 170955103 TTCCctaatataattttttgtgacgatg----taaatgttctgcatttgtgttgtctgatgagataaccactaactgtagtgctattgagcatttgaaacatggctagtgtaatcaagaaaccaaatttttaatgt-atttaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2826838 138 -   2996164 ttgcctaatataattttttgtgacgatg----taaatgttctgcatttgtgttgtctgatgagataaccactaactgtagtgctattgagcatttgaaacatggctagtgtaatcaagaaaccaaatttttaatgt-atttaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     576339 138 +    766320 ttgcctaatataattttttgtgacgatg----taaatgttctgcatttgtgttgtctgatgagataaccactaactgtagtgctattgagcatttgaaacatggctagtgtaatcaagaaaccaaatttttaatgt-atttaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29032846 138 -  71996105 ttgcctaatacaattttttgtgacgatg----taaatgttctgcatttgtgttgtctgatgagataaccactaactgtagtgctattgagcatttgaaacatggctagtgtaatcaagaaaccaaatttttaatgt-atttaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224202 138 +    290775 ttgcctaatataattttttgtgacgatg----taaatgttctgtatttgtgttgtctgatgagataaccactaactgtagtgctattgagcatttgaaacatggctagtgtaatcaagaaaccaaatttttaatgt-atttaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2671547 138 -   3067355 ttgcccaatataattttttgtgacgatg----taaatgttctgcatttgtgttgtctgatgagataaccactagctgtagtgctattgagcatttgaaacatggctagtgtaatcaagaaaccaaatttttaattt-atttaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      45832 139 +    132061 ttgcccaatataattttttgtgatgatg----gaaatgttctatatttgtgttgtctgatgagataaccagtagctgtagtgttattgagcatttgaaagatggctagcgtaatcacggaaccaaattttaaattttatttaa
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     264008 139 -   1771730 ttgcccaatataattttttgtgatgatg----gaaatcttctgtatttgtgttgtgtgatgagacaaccggtagctgtagtgttattgagcatttgaaagatggctagcataatcacggaaaaaaattttaaattttatttaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     336730 139 -    457564 ttgcccaatataattttttgtgatgatg----gaaatgttctgtatttgtgttgtctgatgagataaccagtagctgtagtgttattgagcatctgaaagatgactagcgtaatcacagaaccaaattttaaattttatttag
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           146981 132 +  18854210 -----------atttttttgtgatggtgggaagaaatgctctatgtttgctctgtccattgcagtaaccagtacctatagtgctattgagcatttaaaatatggctactgcagtcaaggaactgaatttttttctttttttga
i otoGar3.GL873550         C 0 I 628
e micMur3.chr6               171238 224 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     638296 731 +    730504 I
e canFam3.chr35            26254978 949 +  26524999 I

a score=493210.000000
s hg38.chr6_GL000254v2_alt   921540 56 +   4827813 ttgtaattaattttaagtggccacatgcagggagtgactgctgcattggacagcac
s panTro5.chr6             29884461 56 + 175400573 ttgtaattaattttaagtggccacatgcagggagcgactgctgcattggacagcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30118777 56 + 173848474 ttgtaattaattttaagtggccacatgcagggagcgactgctgcattggacagcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5917713 56 +   6154872 ttgtaattaattttaagtggccacatgcagggagtgactgctgcattggacagcac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74631970 56 + 122973662 ttgtaattaattttaagtggccacttgcagggagtgactgctgcattggacagcac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30116380 56 + 172585720 ttgtaattaattttaagtggccacttgcaagcagtgattgctgcactggaaggcac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29779458 56 - 170955103 ttgtaattaattttaagtggccacttgcaggcagtgattgctgcactggaaggcac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2826976 56 -   2996164 ttgtaattaattttaagtggccacttgcaggcagtgattgctgcattggaaggcac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     576477 56 +    766320 ttgtaattaattttaagtggccacttgcaggcagtgattgctgcattggaaggcac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29032984 56 -  71996105 ttgtaattaattttaagtggccacttgcaggcagtgattgctgcattggaaggcac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224340 56 +    290775 ttgtaattaattttaagtggccacttgcaggcagtgattgctgcattggaaggcac
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2671685 56 -   3067355 ttgtaattaattttaagtggccacttgcaggcagtgattgctgcattggaaggcac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      45971 56 +    132061 ttgtaattaattttaagtggccatttgcaggtagtgattgctgcattggacagcAT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     264147 56 -   1771730 ttgtaattaattttaagtggccacttgcaggtagtgatcgctgcattggacagcAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     336869 56 -    457564 ttgtaattaattttaagtggccacttgcaggtagtgattgctgcattggacagcAT
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               171238 224 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     638296 731 +    730504 I
e canFam3.chr35            26254978 949 +  26524999 I
e otoGar3.GL873550           147113 628 +  18854210 I

a score=148779.000000
s hg38.chr6_GL000254v2_alt   921596 17 +   4827813 ggCTCTAAATTGAGCCT
s panTro5.chr6             29884517 17 + 175400573 ggCTCTAAATTGAGCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30118833 17 + 173848474 ggCTCTAAATTGAGCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5917769 17 +   6154872 ggCTCTAAATTGGGCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74632026 17 + 122973662 ggTTCTAAATTGAGCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30116436 16 + 172585720 ggCTCTAAATTGAG-CT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29779514 16 - 170955103 ggCTCTAAATTGAG-CT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2827032 17 -   2996164 ggCTCTAAATTGAGCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     576533 17 +    766320 ggCTCTAAATTGAGCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29033040 17 -  71996105 ggCTCTAAATTGCGCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224396 17 +    290775 ggCTCTAAATTGAGCCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2671741 17 -   3067355 ggCTCTAAATTGAGCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      46027 17 +    132061 GGCTCTAAATTGAGTCT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     264203 17 -   1771730 GGCTCTAAATTGAGTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     336925 17 -    457564 GGCTCTAAATTGAGTCT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           147741 17 +  18854210 ggcgccaagccTGAACT
i otoGar3.GL873550         I 628 C 0
e micMur3.chr6               171238 224 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     638296 731 +    730504 I
e canFam3.chr35            26254978 949 +  26524999 I

a score=335801.000000
s hg38.chr6_GL000254v2_alt   921613 32 +   4827813 TTTTTCCTTATTTGGTGAGGCATACTTGCCTT
s panTro5.chr6             29884534 32 + 175400573 TTTTTCCTTATTTGATGAGGCATACTTGCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30118850 32 + 173848474 TTTTTCCTTATTTGATGAGGCATACTTGCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5917786 32 +   6154872 TTTTTCCTTATTTGATGAGGCATACTTGCCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74632043 32 + 122973662 TTTTTCCTTATTTGATGAGGCATACTTGCCTT
i nomLeu3.chr1a            C 0 I 311
s rheMac8.chr4             30116452 32 + 172585720 TTTTTCCTTATTTGAGGAGGCATACTTGCCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29779530 32 - 170955103 TTTTTCCTTATTTGAGGAGGCATACTTGCCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2827049 32 -   2996164 TTTTTCCTTATTTGAGGAGGCATACTTGCCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     576550 32 +    766320 TTTTTCCTTATTTGAGGAGGCATACTTGCCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29033057 32 -  71996105 CTTTTCCTTATTTGAGGAGGCATACTTGCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224413 32 +    290775 TTTTTCCTTATTTGAGGAGGCATACTTGCCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2671758 32 -   3067355 TTTTTCCTTATTTGAGGAGGCATACTTGCCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      46044 31 +    132061 TTTTT-CTTATTTGATGAAGCACACTTGCCTT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     264220 31 -   1771730 TTTTT-CTTATTTGTTGAAGCACGCTTGCCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     336942 31 -    457564 TTTTT-CTTATTTGATGAAGCACACTTGCCTT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               171462 32 + 123392446 TTTTTTCTTATTTGATGAGGCATGCTCGCCCT
i micMur3.chr6             I 224 C 0
s otoGar3.GL873550           147758 32 +  18854210 TCTTTTCTTATTTGATGAAGCATCCTTGCTTT
i otoGar3.GL873550         C 0 I 271
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     638296 731 +    730504 I
e canFam3.chr35            26254978 949 +  26524999 I

a score=70104.000000
s hg38.chr6_GL000254v2_alt   921645 6 +   4827813 AAGATT
s panTro5.chr6             29884566 6 + 175400573 AAGATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30118882 6 + 173848474 AAGATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5917818 6 +   6154872 AATATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74632386 6 + 122973662 aaGATT
i nomLeu3.chr1a            I 311 C 0
s rheMac8.chr4             30116484 6 + 172585720 AAGATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29779562 6 - 170955103 AAGATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2827081 6 -   2996164 AAGATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     576582 6 +    766320 AAGATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29033089 6 -  71996105 AAGATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224445 6 +    290775 AAGATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2671790 6 -   3067355 AAGATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      46075 6 +    132061 AAGATT
i calJac3.chrUn_GL286223   C 0 I 6
s cebCap1.NW_016107755v1     264251 6 -   1771730 AAGAtt
i cebCap1.NW_016107755v1   C 0 I 1909
s aotNan1.NW_018509740v1     336973 6 -    457564 AAGATT
i aotNan1.NW_018509740v1   C 0 I 6
s micMur3.chr6               171494 6 + 123392446 AAGATT
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           148061 6 +  18854210 aagaCT
i otoGar3.GL873550         I 271 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     638296 731 +    730504 I
e canFam3.chr35            26254978 949 +  26524999 I

a score=20323.000000
s hg38.chr6_GL000254v2_alt   921651 2 +   4827813 GG
s panTro5.chr6             29884572 2 + 175400573 GG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30118888 2 + 173848474 GG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5917824 2 +   6154872 GG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74632392 2 + 122973662 GG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30116490 2 + 172585720 GG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29779568 2 - 170955103 GG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2827087 2 -   2996164 GG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     576588 2 +    766320 GG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29033095 2 -  71996105 GG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224451 2 +    290775 GG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2671796 2 -   3067355 GG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      46087 2 +    132061 GA
i calJac3.chrUn_GL286223   I 6 I 1
s aotNan1.NW_018509740v1     336985 2 -    457564 GA
i aotNan1.NW_018509740v1   I 6 I 1
s micMur3.chr6               171500 2 + 123392446 GG
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           148067 2 +  18854210 GG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     638296 731 +    730504 I
e canFam3.chr35            26254978 949 +  26524999 I
e cebCap1.NW_016107755v1     264257 1909 -   1771730 I

a score=527222.000000
s hg38.chr6_GL000254v2_alt   921653 52 +   4827813 GAAGTCTATTTTTGGAACC--TGCTACCAATGCTGGTCTCACACTTGCAATTCT
s panTro5.chr6             29884574 52 + 175400573 GAAGTCTATTTTTGGAACC--TGCTACCAATGCTGGTCTCAAACTTGCAATTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30118890 52 + 173848474 GAAGTCTATTTTTGGAACC--TGCTACCAATGCTGGTCTCACACTTGCAATTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5917826 52 +   6154872 GAAGTCTATTTTTGGAACC--TGCTACCAATGCTGGTCTCACACTTGCAATTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74632394 54 + 122973662 GAAGTCTATTTTTGGAACCAGTGCTACCAATGCTGGTCTCACGCTTGCAATTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30116492 52 + 172585720 GAAGTCTATTTTTGGAACC--TGGTACCAATGCTGGTCTCACCCTTGCAATTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29779570 52 - 170955103 GAAGTCTATTTTTGGAACC--TGGTACCAATGCCGGTCTCACCCTTGCAATTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2827089 52 -   2996164 GAAGTCTATTTTTGGAACC--TGGTACCAATGCTGGTCTCACCCTTGCAATTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     576590 52 +    766320 GAAGTCTATTTTTGGAACC--TGGTACCAATGCTGGTCTCACCCTTGCAATTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29033097 52 -  71996105 GAAGTCTATTTTTGGAACC--TGGTACCAATGCTGGTCTCACCCTTGCAATTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224453 52 +    290775 GAAGTCTATTTTTGGAACC--TGGTACCAATGCTGGTCTCACCCTTGCAATTCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2671798 52 -   3067355 GAAGTCTATTTTTGGAACC--TGGTACCAACGCTGGTCTCACCCTTGCAATTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      46090 52 +    132061 GAAGTGTATTTTTGGAATC--CAGTACCAATGCTGGTTTCACCCTTGCAGTTCT
i calJac3.chrUn_GL286223   I 1 C 0
s cebCap1.NW_016107755v1     266166 52 -   1771730 GAAGTATATTTTTGGAATC--CAGTACCAATGCTGGTCTCACCCTTGTAGTTCT
i cebCap1.NW_016107755v1   I 1909 C 0
s aotNan1.NW_018509740v1     336988 51 -    457564 GAAGTATATTTTTGGACTC--CAGTACCGATGCT-GTCTCACCCCTGCAGTTCT
i aotNan1.NW_018509740v1   I 1 C 0
s micMur3.chr6               171502 52 + 123392446 AAAATATATTTTTGATACT--TGATGCCAATGCTGGTGTCACCCTTGCAGGTCT
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           148069 51 +  18854210 GAAATATATTTTTGAAACT--TGATGCCAA-GTTGTTCTCATCCTTGCAGTTCT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     638296 731 +    730504 I
e canFam3.chr35            26254978 949 +  26524999 I

a score=792375.000000
s hg38.chr6_GL000254v2_alt   921705 72 +   4827813 CAGCTGAGCCAAGAGGTGAGAGA-AAGGTCAT--TTTCCATTCCAGATCTCACTCTCCCCTGTGACACTGAGGAA
s panTro5.chr6             29884626 72 + 175400573 CAGCTGAGCCCAGAGGTGAGAGA-AAGGTCAT--TTTCCATTCCAGATCTCACTCTCCCCTGTGACACTGAGGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30118942 72 + 173848474 CAGCTGAGCCCAGAGGTGAGAGA-AAGGTCAT--TTTCCATTCCAGATCTCACTCTCCCCTGTGACACTGAGGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5917878 72 +   6154872 CAGCTGAGCCCCGAGGTGAGAGA-AAGGTCAT--TTTCCATTCCAGATCTCACTCTCCCCTGTGACACTGAGGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74632448 72 + 122973662 CAGCTGAGCCCAGAGGTGAGAGA-AAGGTCAT--TTTCCATTCCAGATCTCACTCTCCCCTGTGACACTGAGGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30116544 68 + 172585720 CAGCTGAGCCCAGAGGTGAGAGA-AAGG------CTTCCATTCCAGATCTCACTCTCCCCTGTGACACTGAGGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29779622 68 - 170955103 CAGCTGAGCCCAGAGGTGAGAGA-AAGG------CTTCCATTCCAGATCTCACTCTCCCCTGTGACACTGAGGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2827141 68 -   2996164 CAGCTGAGCCCAGAGGTGAGAGA-AAGG------CTTCCATTCCAGATCTCACTCTCCCCTGTGACACTGAGGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     576642 68 +    766320 CACCTGAGCCCAGAGGTGAGAGA-AAGG------TTTCCATTGCAGATCTCACTCTCCCCTGTGACACTGAGGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29033149 68 -  71996105 CACCTGAGCCCAGAGGTGAGAGA-AAGG------CTTCCATTCCAGATCTCACTCTCCCCTGTGACACTGAGGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224505 68 +    290775 CACCTGAGCCCAGAGGTGAGAGA-AAGG------TTTCCATTGCAGATCTCACTCTCCCCTGTGACACTGAGGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2671850 68 -   3067355 CAGCTGAGCCCAGAGGTGAGAGA-AAGG------TTTCCATTCCAGATCTCACTCTTCCCTGTGACACTGAGGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      46142 72 +    132061 CAGCTGAGCCCAAAGGTGAGAGA-AAGGTCCT--TCTCCATTCCAGATCTCACTCTCCCCCGGGACACTGAGGAA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     266218 72 -   1771730 CAGCTGAGCCCAGAGGTGAGAGA-AAGGTCAT--TCTCCATTCCAGATCTCACTCTCCCCCATGACACTGAGGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     337039 72 -    457564 CAGCTGAGCCCAGAGGTGAGAGA-AAGGTCCT--TTTCCATTCCAGATCTCACTCTCCCCCATGACACTGAGGAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               171554 74 + 123392446 CAGTTGAGTCCAGGGATAAGAAATAAGGTCCT-ATTTCCACTCTGGATCTCACTTTCCCCTTTGACACTGAGGAA
i micMur3.chr6             C 0 I 228
s otoGar3.GL873550           148120 74 +  18854210 CAGCTGAGTCCAGGGATAAGAAGTAAGGTCCT-CTTTCCATTCCAGATCTCACTTTCCCCTTTGGCACTGAGGAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26255927 68 +  26524999 CAGCTGAG------GGCAGGACA-AAGGCCTTAATTTCCAGTCTGGGTCTCCCTTTTCCCTGTGACACTGTGGAA
i canFam3.chr35            I 949 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     638296 731 +    730504 I

a score=620545.000000
s hg38.chr6_GL000254v2_alt   921777 61 +   4827813 ACTGGCAAGTGATGTGAAGGCTGGAGAGCGTGTCCTGTATGCTGGCTCTGTCCCTTCTGCC
s panTro5.chr6             29884698 61 + 175400573 ACTGGCAAGTGATGTGAAGGCTGGAGAGCGTGTCCTGTATGCTGGCTCTGTCCCTTCTGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30119014 61 + 173848474 ACTGGCAAGTGATGTGAAGGCTGGAGAGCGTGTCCTGTATGCTGGCTCTGTCCCTTCTGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5917950 61 +   6154872 ACTGGCAAGTGATGTGAAGGCTGGAGAGCGTGTCCTGTATGCTGGCTCTGTCCCTTCCGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74632520 61 + 122973662 ACTGGCAAGTGATGTGAAGGCTGGAGAGTGTGTCCTGTATGCTGGCTCTGTCCCTTCTGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30116612 61 + 172585720 ACTGGCAAGTGATGTGAAGGCTGGAGAGCATGTCCTGTATGCTGGCTCTGTCCCTGCTGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29779690 61 - 170955103 ACTGGCAAGTGATGTGAAGGCTGGAGAGCATGTCCTGTATGCTGGCTCTGTCCCTGCTGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2827209 61 -   2996164 ACTGGCAAGTGATGTGAAGGCTGGAGAGCGTGTCCTGTATGCTGGCTCTGTCCCTGCTGCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     576710 61 +    766320 ACTGGCAAGTGATGTGAAGGCTGGAGAGCGTGTCCTGTATGCTGGCTCTGTCCCTGCTGCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29033217 61 -  71996105 ACTGGCAAGTGATGTGAAGGCTGGAGAGCGTGTCCTGTATGCTGGCTCTGTCCCTGCTGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224573 61 +    290775 ACTGGCAAGTGATGTGAAGGCTGGAGAGCGTGTCCTGTATGCTGGCTCTGTCCCTGCTGCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2671918 61 -   3067355 ACTGGCAAGTGATGTGAAGGCTGGAGAGCGTGTCCTGTATGCTGGCTCTGTCCCTGCTGCC
i colAng1.NW_012115566v1   C 0 I 312
s calJac3.chrUn_GL286223      46214 61 +    132061 ACTGGCAAGCGATGCAAAGGCTGGAGAGCATGTCCTATATCCTGGTTCTGTCCCTGCTGCC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     266290 61 -   1771730 ACTGGCAGGTGATGCGAAGGCTGGAGAGCATGTCCTGTAACCTGGCTCTGTCTCTGATGCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     337111 61 -    457564 ACTGGCAAGCGATGCGAAGGCTGGAGAGCGTGTCCTGTATCCTGGCTCTGTCCCTGCTGCC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           148194 61 +  18854210 ATTGGAGAGCAATGCCCAGGCCAGGGGATGTGTTCTGCATGTTGGCTATGTCCCTGCTGCC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26255995 49 +  26524999 ATCAGAGCAGGACACCAAGGCTGGGAGGTGTGCCCTG---------TCAGTCCCCGCC---
i canFam3.chr35            C 0 C 0
e micMur3.chr6               171628 228 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     638296 731 +    730504 I

a score=362651.000000
s hg38.chr6_GL000254v2_alt   921838 41 +   4827813 TGTGTTGACTGACATAGTTAGTTGCTGCCCTTGCTGGTCTC
s panTro5.chr6             29884759 41 + 175400573 TGTGTTGACTGACATAGTTAGTTGCTGCCCTTGCTGGTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30119075 41 + 173848474 TGTGTTGACTGACATAGTTAGTTGCTGCCCTTGCTGGTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5918011 41 +   6154872 TGTGTTGACTGACATAGTTAGTTGCTGCCTTTGCTGGTCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74632581 41 + 122973662 TGTGTTGACTGACATAGTTAGTTGCTGCCCTTGCTGGTCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30116673 41 + 172585720 TGTGTTGACTGACACAGTTAGTTGCTGCCCTTGCTGGTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29779751 41 - 170955103 TGTGTTGACTGACACAGTTAGTTGCTGCCCTTGCTGGTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2827270 41 -   2996164 TGTGTTGACTGACACAGTTAGTTGCTGCCCTTGCTGGTCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     576771 41 +    766320 TGTGTTGACTGACACAGTTAGTTGCTGCCCTTGCTGGTCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29033278 37 -  71996105 TGTGTTGACTGACAC----AGTTGCTGCCCTTGCTGGTCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224634 41 +    290775 TGTGTTGACTGACACAGTTAGTTGCTGCCCTTGCTGGTCTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2672291 41 -   3067355 TGTTTTGACTGACACAGTTAGTTGCTGCCCTTGCTGGTCTC
i colAng1.NW_012115566v1   I 312 C 0
s calJac3.chrUn_GL286223      46275 41 +    132061 TACGTTGACTGACACAGTTACTTGCTGTCCCTGCTGGTCTC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     266351 39 -   1771730 TACATTGACTG--ACAGTTAATTGCTGCCCTTGCTGGTCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     337172 41 -    457564 TACGTTGACTGACACAGGTAATTGCTGCCCTTGCTGGTCTC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           148255 35 +  18854210 TATGCAGACGGAC------AGCTGCTGCCCTTGCAGATATT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26256044 17 +  26524999 ----------------------TGC--CCCTCAACAATCTC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               171628 228 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     638296 731 +    730504 I

a score=1539361.000000
s hg38.chr6_GL000254v2_alt   921879 151 +   4827813 CCTTCCTCCAACCT---------TGCCTC-------TCTGAGCAC-ACCTGACATTCATCTCATGACTTCCCTAAAAACATTC-TTTGGGAACAAGAAACTAACAAATCCCAAGTGACCTATCACATATACAAACATACAGGGCAGAGTTTGGATTCGCGGTAGAAGAA
s panTro5.chr6             29884800 151 + 175400573 CCTTCCTCCAACCT---------TGCCTC-------TCTGAGCAC-ACCTGACATTCATCTCATGACTTCCCTAAAAACATTC-TTTGGGAACAAGAAACTAACAAATCCCAAGTGACCTATCACATATACAAACATACAGAACAGAGTTTGGATTCGCGGTAGAAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30119116 151 + 173848474 CCTTCCTCCAACCT---------TGCCTC-------TCTGAGCAC-ACCTGACATTCATCTCATGACTTCCCTAAAAACATTC-TTTGGGAACAAGAAACTAACAAATTCCAAGTGACCTATCACATATACAAACATACAGAACAGAGTTTGGATTCGCAGTAGAAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5918052 151 +   6154872 CCTTCCTCCAACCT---------TGCCTC-------TCTGAGCAC-ACCTGACATTCATCTCATGACTTCCCTAAAAACATTC-TTTGGGAACAAGAAACTAACAAATCCCAAGTGACCTATCACATATACAAACATACAGAACAGAGTTTGGATTTGCGGTAGAAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74632622 151 + 122973662 CCTTCCTCCAACCT---------TGCCTC-------TCTGAGCAC-ACCTGACATTCATCTCATGACTTCCCTAAAAATATTC-TTTGGGAACAAGAAACTAACAAATCCCAAGTGACCTATCACATATACAAATGTACAGAACAGAGTTTGGATTCGCGGTAGAAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30116714 151 + 172585720 CCTTCCTCCAACCT---------TGCCTC-------TCTGAGCAC-TCCTGACGTTCATCTCATGACTTCCCTAAAAACATTC-TTTGGGGACAAGAAACTAACAAATCCCAAGTGACCTATCACATATACAAACATACAAAACAGAGTTTGGATTCGTGGTAGAAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29779792 151 - 170955103 CCTTCCTCCAACCT---------TGCCTC-------TCTGAGCAC-TCCTGACGTTCATCTCATGACTTCCCTAAAAACATTC-TTTGGGGACAAGAAACTAACAAATCCCAAGTGACCTATCACATATACAAACATACAAAACAGAGTTTGGATTCGTGGTAGAAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2827311 151 -   2996164 CCTTCCTCCAACCT---------TGCTTC-------TCTGAGCAC-TCCTGACGTTCATCTCATGACTTCCCTAAAAACATTC-TTTGGGGACAAGAAACTAACAAATCCCAAGTGACCTATCACATATACAAACATACAAAACAGAGTTTGGATTCGTGGTAGAAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     576812 151 +    766320 CCTTCCTCCAACCT---------TGCCTC-------TCTGAGCAC-TCCTGACGTTCATCTCATGACTTCCCTAAAAACATTC-TTTGGGGACAAGAAACTAACAAATCCCAAGTGACCCATCACATATACAAACATACAGAACAGAGTTTGGATTCGTGGTAGAAGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29033315 151 -  71996105 CCTTCCTCCAACCT---------TGCCTC-------TCTGAGCAC-TTCTGACGTTCATCTCATGACTTCCCTAAAAACATTC-TTTGGGGACAAGAAACTAACAAATCCCAAGTGACCCATCACATATACAAACATACAGAACAGAGTTTGGATTCGTGGTAGAAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224675 151 +    290775 CCTTCCTCCAACCT---------TGCCTC-------TCTGAGCAC-TCCTGACGTTCATCTCATGACTTCCCTAAAAACATTC-TTTGGGGACAAGAAACTAACAAATCCCAAGTGACCCATCACATATACAAACATACAGAACAGAGTTTGGATTCGTGGTAGAAGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2672332 151 -   3067355 CCTTCCTCCAACCT---------TGCCTC-------TCTGAGCAC-TCCTGACGTTCATCTCATGACTTCCCTAAAAACATTC-TTTGGGGACAAGAAACTAACAAATCCCGAGTGACCCATCACATATGCAAACATACAGAACAGAGTTTGGATTTGCAGTAGAAGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      46316 150 +    132061 CCTTCCTCTACCCT---------TGCCTC-------TCTGAGCAC-TCC-GACACTCAACTCACAACTTTCCTAAAAACATGC-TTTGGAGACAAGAAACTAACAAATCCCAAGTGATCCAAAACATATACAAACATACTGAAGGGAGTTGGGATTTGCAGTAGGAAAA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     266390 151 -   1771730 CCTTCCTCCAGCCT---------TGCCTC-------TCTGAGCAC-TCCTGACATTCAACTCATTACTTTCCTGAAAACATGC-TTTGGGGACAAGAAACTAACAAATCCCAAGTGATCCATCACATATACAAACATACTGAAGGGAGCTGGGATTTGCGGTAGGAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     337213 152 -    457564 CCTTCCTCCAGCCT---------TGCCTC-------TCTGAGCAC-TCCTGACATTCAACTCACGACTTTCCTAAAAACATTCATCTGGGGACAAGAAACTAACAAATCCCAAGTGATCCATCACATGTACAAACATACCGAAGGGAGCTGGGATTTGCGGTAGGAAAA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     639027 139 +    730504 CCTTCCTCCAGCCC---------TGCCTC-------TCTGAGCACAAGCAG----TCAACTCCTGGCTCCCCTAAATGTATTT-TTTCGGGGCAAGAATCTAACTAAGCCCAAGCAACCCATCACATATCTAAACATAC-----Ggagtttggatttgcagtagg----
i proCoq1.NW_012152574v1   I 731 C 0
s otoGar3.GL873550           148290 148 +  18854210 CCTTCTTCCAGAGC---------TGCCTC-------TCTGAGCATGAGCAGATATACAACTCATGACTTCCCTAAATGTATTT-TTGAGGGGCCAGA----AGCTAAGCCCAAGCTACCCACCAAATATCTAaacatacagaagggagtttggatttgcagtagaagag
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26256061 127 +  26524999 ---ACCTCCGACCTCCGTGATCGTCCCTCAGATTGGTCTGAGCAC-TGGCAACA-----CTCATGACTTTCCCCAGCAAATCC-TCTGGGAATGGGGAGCTCACTAAGTCCCAGCCATTCAGCAGCTGGA-----ACACAGG---------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               171628 228 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I

a score=536982.000000
s hg38.chr6_GL000254v2_alt   922030 42 +   4827813 AGGGAGGTTAGACATTAAGAAGAATGGTCTGGTGATGACAGT
s panTro5.chr6             29884951 42 + 175400573 AGGGAGGTTAGACATCAAGAAGAAGAGTCTGGTGATGACAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30119267 42 + 173848474 AGGGAGGTTAGACATCAAGAAGAAGAGTCTGGTGATGACAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5918203 42 +   6154872 AGGGAGGTTGGACATCAAGAAGAATGGTCTGGTGATGACAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74632773 42 + 122973662 AGGGAGGTTAGACATCAAGAAGGATGGTCTGGTGATGACAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30116865 42 + 172585720 AGGGAGGTTAGACATCAAGAAGAATGGTCTGGTGATGATAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29779943 42 - 170955103 AGGGAGGTTAGACATCAAGAAGAATGGTCTGGTGATGACAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2827462 42 -   2996164 AGGGAGGTTAGACATCAAGAAGAATGGTCTGGTGATGACAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     576963 42 +    766320 AGGGAGGTTAGACATCAAGAAGAATGGTCTGGTGATGACAGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29033466 42 -  71996105 AGGGAGGTTAGACATCAAGAAGAATGGTCTGGTGATGACAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224826 42 +    290775 AGGGAGGTTAGACATCAAGAAGAATGGTCTGGTGATGACAGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2672483 42 -   3067355 AGGGAAGTTAGACATCAAGAAGAATGGTCTGGTGATGACAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      46466 42 +    132061 AGGGAGGTTAGACATCAAGAAGAATGGTCTGGTGATGACAGT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     266541 42 -   1771730 AGGGAGGTTAGACTTCAAGAAGAATGGTCTGGCGATGACATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     337365 42 -    457564 AGGGAGGTTAAACATTAAGAAGAATGGTCTGGTGATGTCAGT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               171856 42 + 123392446 AGGGAGGTCAGACAATAGGAAGAATGGTTTGGTAATAACCGT
i micMur3.chr6             I 228 C 0
s proCoq1.NW_012152574v1     639166 42 +    730504 agggaggttagacattaggaagaatggtttggtaatgacagt
i proCoq1.NW_012152574v1   C 0 I 103
s otoGar3.GL873550           148438 41 +  18854210 -agtaggttagacctcaggaagaatggtttggtaatgacagt
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26256188 40 +  26524999 AGGGGAGCAAGAGGTCAGGGAGCAAGGCCTACC--CCGCAGC
i canFam3.chr35            C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I

a score=218686.000000
s hg38.chr6_GL000254v2_alt   922072 23 +   4827813 TGTGAGATAATAGAAACAGG--AAA
s panTro5.chr6             29884993 23 + 175400573 TGTGAGATAATAGAAACAGG--AAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30119309 23 + 173848474 TGTGAGATAATAGAAACAGG--AAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5918245 23 +   6154872 TGTGAGATAATAGAAATAGG--ATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74632815 23 + 122973662 TGTGAGATAATAGAAATAGG--AAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30116907 23 + 172585720 TGTGAGATAATAGAAATAGG--AAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29779985 23 - 170955103 TGTGAGATAATAGAAATAGG--AAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2827504 25 -   2996164 TGTGAGATAATAGAAATAGGAAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     577005 22 +    766320 TGTGAGATAATAGAAACAGG---AA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29033508 24 -  71996105 TGTGAGATAATAGAAATAGG-AAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224868 22 +    290775 TGTGAGATAATAGAAACAGG---AA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2672525 23 -   3067355 TGTGAGATAATAGAAATAGG--AAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      46508 22 +    132061 TGTGAGACAATAGAAATAGG---AA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     266583 22 -   1771730 TGTGAGACAATAGAAATAGG---AA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     337407 22 -    457564 TGTGAGACAATAGAAATAGG---AA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               171898 23 + 123392446 TGTGAGACAACCGAAATAGG--AAA
i micMur3.chr6             C 0 I 53
s otoGar3.GL873550           148479 23 +  18854210 tgtgagacaatagaaACAGG--AAA
i otoGar3.GL873550         C 0 I 2
s canFam3.chr35            26256228 12 +  26524999 ----------TGGCACCAGG--AA-
i canFam3.chr35            C 0 C 0
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     639208 103 +    730504 I

a score=276609.000000
s hg38.chr6_GL000254v2_alt   922095 41 +   4827813 A--AGAAATCTAA----------------------GTTTTCTTTCTTTTTTTAAGAACCAATAAT
s panTro5.chr6             29885016 41 + 175400573 A--AGAAATCTAA----------------------GTTTTCTTTCTTTTTTTAAGAACCAATAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30119332 41 + 173848474 A--AGAAATCTAA----------------------GTTTTCTTTCTTTTTTTAAGAACCAATAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5918268 41 +   6154872 A--AGAAATCTAA----------------------GTTTTCTTTCTTTTTTTAAGAACCAATAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74632838 41 + 122973662 A--AAAAATCTAC----------------------GTTTTCTTTCTTTTTTTAAGAACCAATAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30116930 41 + 172585720 A--AAAAATCTAA----------------------GTTTTCTTTCTTTTTTGAAGAACCAATCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29780008 41 - 170955103 A--AAAAATCTAA----------------------GTTTTCTTTCTTTTTTGAAGAACCAATCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2827529 41 -   2996164 A--AAAAATCTAA----------------------GTTTTCTTTCTTTTTTGAAGAACCAATCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     577027 41 +    766320 A--AAAAATCTAA----------------------GTTTTCTTTCTTTTTTGAAGAACCAATCAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29033532 41 -  71996105 A--AAAAATCTAA----------------------GTTTTCTTTCTTTTTTGAAGAACCAATCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224890 41 +    290775 A--AAAAATCTAA----------------------GTTTTCTTTCTTTTTTGAAGAACCAATCAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2672548 41 -   3067355 A--AAAAATCTAA----------------------GTTTTCTTTCTGTTTTGAAGAACGAATCAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      46530 40 +    132061 T--AAAAATCTAA----------------------GTTTTATTTCCTTTTTTAAGAATCAGTAA-
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     266605 41 -   1771730 T--AAAAAAATAT----------------------GTTTTATTTCTTTTTTTAAGAATCAATAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     337429 43 -    457564 TAAAAAAATCTAA----------------------GTTTTATTTCTTTTTTTAAGACTCAATAAT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           148504 60 +  18854210 -----AAGTCAACCtttttttttctttctttctttcttttttttttttttttGAGAGCCCAAACT
i otoGar3.GL873550         I 2 C 0
s canFam3.chr35            26256240  5 +  26524999 ----------------------------------------------------GAGAG--------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               171921 53 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e dasNov3.JH582591            70445 7252 +    102524 I
e proCoq1.NW_012152574v1     639208 103 +    730504 I

a score=304789.000000
s hg38.chr6_GL000254v2_alt   922136 36 +   4827813 AATTTCTCTCTTTTGACTAGTCAGTAGGGCTGGGGT
s panTro5.chr6             29885057 36 + 175400573 AATTTCTCTCTTTTGACTAGTCAGTAGGGCTGGGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30119373 36 + 173848474 AATTTCTCTCTTTTGACTAGTCAGTAGGGCTGGGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5918309 36 +   6154872 AATTTCTCTCTTTTGACTAGTCAGTAGGGCTGGGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74632879 36 + 122973662 AATTTCTCTCTTTTGACTAGTCGGTAGGGCTGGGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30116971 36 + 172585720 ACTTTCTCTCTTTTGACTAATTGGTAGGGCTGGGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29780049 36 - 170955103 ACTTTCTCTCTTTTGACTAATTGGTAGGGCTGGGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2827570 36 -   2996164 ACTTTCTCTCTTTTGACTAATTGGTAGGGCTGGGGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     577068 36 +    766320 ACTTTCTCTCTTTTGACTAATTGGTAGGGCTGGGGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29033573 36 -  71996105 ACTTTCTCTCTTTCGACTAATTGGTAGGGCTGGGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224931 36 +    290775 ACTTTCTCTCTTTTGACTAATTGGTAGGGCTGGGGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2672589 36 -   3067355 ACTTTCTCTCTTTTGACTAATTGGTAGGGCTGGGGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      46570 35 +    132061 AATTCCTCCCTTTTGATTATTTGGTAGGGCT-GGGT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     266646 35 -   1771730 AATTCCTCCCTTTTGATTAGTTGGTAGGGCT-GGGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     337472 35 -    457564 AATTCCTCCCTTTTGACTAGTTGGTAGGGCT-GGGT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           148564 31 +  18854210 AATCCCTCTCTCTTGGCTAGTT--TCAGG---GAGT
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            77697 34 +    102524 AGTCCCTCTCCCGTGGCTCG-AACTAGTGCAGGGG-
i dasNov3.JH582591         I 7252 C 0
e micMur3.chr6               171921 53 + 123392446 I
e mm10.chr17               57961894 1784 -  94987271 I
e proCoq1.NW_012152574v1     639208 103 +    730504 I
e canFam3.chr35            26256245  0 +  26524999 C

a score=87607.000000
s hg38.chr6_GL000254v2_alt   922172 8 +   4827813 GGATTGGA
s panTro5.chr6             29885093 8 + 175400573 GGATTGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30119409 8 + 173848474 GGATTGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5918345 8 +   6154872 GGATTGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74632915 8 + 122973662 GGATTGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30117007 8 + 172585720 GGATTGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29780085 8 - 170955103 GGATTGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2827606 8 -   2996164 GGATTGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     577104 8 +    766320 GGATTGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29033609 8 -  71996105 GGAGTGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224967 8 +    290775 GGATTGGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2672625 8 -   3067355 GGATTGGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      46605 8 +    132061 GGATTGGA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     266681 8 -   1771730 GGATTGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     337507 8 -    457564 GGATTGGA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           148595 3 +  18854210 GAA-----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57963678 8 -  94987271 GAGTTAAA
i mm10.chr17               I 1784 C 0
s canFam3.chr35            26256245 8 +  26524999 GGGTTGGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            77731 6 +    102524 --GTTGAA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               171921 53 + 123392446 I
e proCoq1.NW_012152574v1     639208 103 +    730504 I

a score=115582.000000
s hg38.chr6_GL000254v2_alt   922180 12 +   4827813 GGAAGCTTACAT
s panTro5.chr6             29885101 12 + 175400573 GGAACCTTACAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30119417 12 + 173848474 GGAACCTTACAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5918353 12 +   6154872 GGAACCTTACGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74632923 12 + 122973662 GGAACCTTACAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30117015 12 + 172585720 GGAACCTTACAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29780093 12 - 170955103 GGAACCTTACGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2827614 12 -   2996164 GGAACCTTACAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     577112 12 +    766320 GGAACCTTGTGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29033617 12 -  71996105 GGAACCTTACGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224975 12 +    290775 GGAACCTTATGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2672633 12 -   3067355 GGAACCTTATGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      46613 12 +    132061 GGAATCTTGCAT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     266689 12 -   1771730 GGAACCTTACAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     337515 12 -    457564 GGAACCTTACGT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     639311 12 +    730504 GGAACCTTACAG
i proCoq1.NW_012152574v1   I 103 C 0
s otoGar3.GL873550           148598  2 +  18854210 --------AC--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57963686 12 -  94987271 CAAGCCTTATAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26256253 12 +  26524999 GGAACCTCACAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            77737 10 +    102524 GAAACCTGAG--
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               171921 53 + 123392446 I

a score=473736.000000
s hg38.chr6_GL000254v2_alt   922192 39 +   4827813 ATTCCATGAACAAGCCTCTTCCTAAGGTCCTGTAAGTGA
s panTro5.chr6             29885113 39 + 175400573 ATTCCATGAACAAGCCTCTTCCTAAGGTCCTGTAAGTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30119429 39 + 173848474 ATTCCATGAACAAGCCTCTTCCTAAGGTCCTGTAAGTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5918365 39 +   6154872 ATTCCATGAACAAGCCTCTTCCTAAGGTCCTGTAAGTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74632935 39 + 122973662 ATTCCATGAACAAGCCTCTTCCTGAGGTCCTGTAAGTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30117027 39 + 172585720 ATTCCATAAACGAGCCTCTCCCTGAGGTCCTGTAAGTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29780105 39 - 170955103 ATTCCATAAACGAGCCTCTCCCTGAGGTCCTGTAAGTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2827626 39 -   2996164 ATTCCATAAACGAGCCTCTCCCTGAGGTCCTGTAAATGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     577124 39 +    766320 ATTCCATAAACGAGCCTCTCCCTGAGGTCCTGTAAGTGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29033629 39 -  71996105 ATTCCATAAACGAGCCTCTCCCCGAGGTCCTGTAAGTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     224987 39 +    290775 ATTCCATAAACGAGCCTCTCCCTGAGGTCCTGTAAGTGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2672645 39 -   3067355 ATTCCATAAACGAGCTTCTCCCTGCGGTCCTGTAAGTGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      46625 39 +    132061 GTTTCATGAACAAGCCTCTTCCTAAGGTCCTGTAAGTGA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     266701 39 -   1771730 GTTCCATGAACAAGCCTCTTCCTGAGGTCCTGTAAGTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     337527 39 -    457564 GTTCCATGAACAAGCCTCTTCCTGAGGTCCTGTAAGTGA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               171974 39 + 123392446 ATTCCATGAACAAGCCCCTTCCTGAGGTCCAGTGAGTGA
i micMur3.chr6             I 53 I 59
s proCoq1.NW_012152574v1     639323 39 +    730504 ATTCCATAAATAAGCTTCTTCCTGAGGTCCAGTGGGTGA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           148600 39 +  18854210 TTTACACAAACAAACCTCTTCCTAGGACCCAGTGAGTGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57963698 23 -  94987271 ACTTTACAAACAAGTCCCT--CTGA--------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26256265 23 +  26524999 ----------------GCCCAGTGAGGTGTCGTCCCAGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            77747 37 +    102524 ATTCCACGAAC-ACCCCCTTCCTGAGGCCCAGCGCGGG-
i dasNov3.JH582591         C 0 C 0

a score=592758.000000
s hg38.chr6_GL000254v2_alt   922231 61 +   4827813 TCCTGCCCCACTGATTAGCCCCTAGAAGACCCTTCAAAGGTTGGATCTCCAGGAGGGAGTG
s panTro5.chr6             29885152 61 + 175400573 CCCTTCCCCACTGATTAGCCCCTAGAAGACCCTTCAAAGGTTGGATCTCCAGGAGGGAGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30119468 61 + 173848474 CCCTTCCCCACTGATTAGCCCCTAGAAGACCCTTCAAAGGTTGGATCTCCAGGAGGGAGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5918404 61 +   6154872 TCCTGCCCCACTGATTAGCCCCTAGAAGACCCTTCAAAGGTTGGATCTCCAGGAGGGAGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74632974 61 + 122973662 TCCTTCCTCACTAATTAGCCCCTGGAAGACCCTTCAAAGGTTGGATCTACAGGAGGGAGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30117066 61 + 172585720 TCCTTCCCCACCAATTAGCCCCTGCAAGACCCTTCAAGGGTTGGATCTCCAGGAGGGCGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29780144 61 - 170955103 TCCTTCCCCACCAATTAGCCCCTGCAAGACCCTTCAAGGGTTGGATCTCCAGGAGGGCGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2827665 61 -   2996164 TCCTTCCCCACCAATTAGCCCCTGCAAGACCCTTCAAGGGTTGGATCTCCAGGAGGGCGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     577163 61 +    766320 TCCTTCCCCACCAATTAGCCCCTGCAAGACCCTTCAAGGGTTGGATCTCCAGGAGGGCGTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29033668 61 -  71996105 TCCTTCCCCACCGATTAGCCCCTGCAAGACCCTTCAAGGGTTGGATCTCCAGGAGGGCGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     225026 61 +    290775 TCCTTCCCCACCAATTAGCCCCTGCAAGACCCTTCAAGGGTTGGATCTCCAGGAGGGCGTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2672684 61 -   3067355 TCCTTCCCCACCGATTAGCCCCTGCAAGACCCTTCAAGGGTTGGATCTCCAGGAGGGCATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      46664 61 +    132061 TCCTTCCCCACTGATTAGGCCCTAGAAAACCCTTCAGAGGCTGGATCTCCAGGAAGGAGTG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     266740 61 -   1771730 TCCTTCCTCACTGATTAGCCCCTAGAAAACCCTTCAGAGGCTGGATCTCCAGAAAGGAGTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     337566 61 -    457564 TCCTTCCCCACTGATTAGCCCCTAGAAAACCCTTCAGAGGCTGGGTCTCCAGGAAGGAGTG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     639362 61 +    730504 TCGGTCCCCACTGATCAGCCCCCAGAAGCCCCCTCAAAGGCTATGTCTCCCAGGGGACGTG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           148639 56 +  18854210 TTGAT-CACACTAATCAGCCCCTAGAATCCTCCTCAAAGGC--TGTTTCCTAAAGGATG--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57963721 55 -  94987271 ----TTATCACTGACTAACCACTACATGCCCTTCCCAAGACTGGATCCATGGAGGGGAA--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26256288 34 +  26524999 ----------------AGCCTCTGGAATAC-----------TGGGCAGCCCAGAGGGGGCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            77784 35 +    102524 --------------------CCTCGAAG-CCCCTCAAAGGCTGGGGCTGGAGGAAG-----
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               172013 59 + 123392446 I

a score=5753904.000000
s hg38.chr6_GL000254v2_alt   922292 394 +   4827813 GGGGAGGAAAGCCCTGTACCAGGCAGCCTCTGCTCCATTGCTCTG-G--GGGGGTGG---GGAAGGCAAACCCTGGTCATCCCCTCAGTCTGTAGCCCTTTTGTGTGAGTGCCTGGCAAGGGTGACGT-GG-----GGCTGTTTCTGCG---GGCACAGCTGCAGCAATTACCGGAGTGGAGGCAGGGCCCAGGCAGCACTGCCCT-----CCAAGATCTTCCC-TTGGGCT-TTTCAGCAGTAAGGGGACATGCACCCCAAGGGCCTCCACTTGGCCTGACCTTGCTGCGGGGGC---TCTCTGTCCCCAGGAACAGTAGAGATGGCAAGCTTATCGAGACCCTCTCTGCCCAGCTGcctctgctccttcctcctcctcctcctcctccAAGTGTCTTCCAGCTATGCAGGTAAGACA
s panTro5.chr6             29885213 394 + 175400573 GGGGAGGAAAGCCCTGTACCAGGCAGCCTCTGCTCCATTGCTCTG-G--GGGGGTGG---GGAAGGCAAACCCTGGTCATCCCCTCAGTCTGTAGCCCTTTTGTGTGAGTGCCTGGCAAGGGTGACGT-GG-----GGCTGTTTCTGCG---GGCACAGCTGCAGCACTTACCGGAGTGGAGGCAGGGCCCAGGCAGCACTGCCCT-----CCAAGATCTTCCC-TCGGGCT-TTTCAGCAGTAAGGGGACATGCACCCCAAGGGCCTCCACTTGGCCTGACCTTGCTGCGGGGGC---TCTCTGTCCCCAGGAACAGTAGAGATGGCAAGCTTATCGAGACCCTCTCTGCCCAGCTGcctctgctccttcctcctcctcctcctcctccAAGTGTCTTCCAGCTATGCAGGTAAGACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30119529 391 + 173848474 GGGGAGGAAAGCCCTGTACCAGGCAGCCTCTGCTCCATTGCTCTG-G--GGGGGTGG---GGAAGGCAAACCCTGGTCATCCCCTCAGTCTGTAGCCCTTTTGTGTGAGTGCCTGGCAAGGGTGACGT-GG-----GGCTGTTTCTGCG---GGCACAGCTGCAGCACTTACCGGAGTGGAGGCAGGGCCCAGGCAGCACTGCCCT-----CCAAGATCTTCCC-TCGGGCT-TTTCAGCAGTAAGGGGACATGCACCCCAAGGGCCTCCACTTGGCCTGACCTTGCTGCGGGGGC---TCTCTGTCCCCAGGAACAGTAGAGATGGCAAGCTTATTGAGACCCTCTCTGCCCAGCTGcctctgctcct---tcctcctcctcctcctccAAGTGTCTTCCAGCTATGCAGGTAAGACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5918465 391 +   6154872 GGGGAGGAAAGCCCTGTACCAGGCAGCCTCTGCTCCATTGCTCTG-G--GGGGGTGG---GGAAGGCAAACCCTGGTCATCCCCTCAGTCTGTAGCCCTTTTGTGTGAGTGCCTGGCAAGGGTGACGT-GG-----GGCTGTTTCTGCG---GGCACAGCTGCAGCACTTACCGGAGTGGAGGCAGGGCCCAGGCAGCACTGCCCT-----CCAAGATCTTCCC-TCGGGCT-TTTCAGCAGTAAGGGGACATGCACCCCAAGGGCCTCCACTTGGCCTGACCTTGCTGCGGGGGC---TCTCTGTCCCCAGGAGCAGTAGAGATGGCAAGCTTATCGAGACCCTCTCTGCCCAGCTGcctctgctcct---tcctcctcctcctcctccAAGTGTCTTCCAGCTATGCAGGTAAGACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74633035 395 + 122973662 GGGGAGGAAAGCCCAGTACCAGGCAGCCTCTGCTCCATTGCTCTG-G--GGGGGTGG---GGAAGGCAAACCCTGGTCATCCCCTCAGTCTGTAGCCCTTTTGTCTGAGTGCCTGGCAAGGGTGACGTGGG-----GGCTGTTTCTGCG---GGCACAGCTGCAGCACTTACCGGAGTGGAGGCAGGGCCCAGGCAGCACTGCCCT-----CCAAGATCTTCCC-TCGGGCA-TTTCAGCAGTAAGGGGTCATGCACCCTAAGGGCCTCCACTTGGCTTGACCTTGCTGCGGGGGC---TCTCTGTCCCCAGGAACAGTGGAGATGGCAAGCTTATCGagaccctctctgcccagctgcctctgctccttccccctcctcctcctcctccaagtgtcttccagctatgcaggtaaggca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30117127 394 + 172585720 GGGGAGGAAAGCCCAGTACCAGGCAGCCTCTGCTCCATTGCTCTG-G--GGGGGTGG---GGAAGGCAAACCCTGGTCATCCCCTCAGTCTGTAGACCTTTTGTGTGAATGCCTGGCAAGGGTGACGT-GG-----GTCTGTTTCTGCG---GGCACAGCTGCAGCACTTACTGGAGTGGAGGCAGGGCCCAGGCAGCACTGCCCT-----CCCAGATCTTCCC-TCTGGCT-TTTCAGCAGTAAGGGGACATGCACCCCGAGGCCCTCCACTTGGCCTGACCCTGCTGTGGGGGC---TTTCTGTCCCCAGGAACGGTGGACATGGCAAGCTTATCAAGACCCTCTCTGCCCAGCTGcctctgctccttcctcctcctcctgctcctccAAGTGTCTTCCAGCTACGCAGGTAAGACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29780205 394 - 170955103 GGGGAGGAAAGCCCAGTACCAGGCAGCCTCTGCTCCATTGCTCTG-G--GGGGGTGG---GGAAGGCAAACCCTGGTCATCCCCTCAGTCTGTAGACCTTTTGTGTGAATGCCTGGCAAGGGTGACGT-GG-----GGCTGTTTCTGCG---GGCACAGCTGCAGCACTTACTGGAGTGGAGGCAGGGCCCAGGCAGCACTGCCCT-----CCCAGATCTTCCC-TCTGGCT-TTTCAGCAGTAAGGGGACATGCACCCCGAGGCCCTCCACTTGGCCTGACCCTGCTGTGGGGGC---TTTCTGTCCCCAGGAACGGTGGACATGGCAAGCTTATCAAGACCCTCTCTGCCCAGCTGcctctgctccttcctcctcctcctgctcctccAAGTGTCTTCCAGCTACGCAGGTAAGACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2827726 394 -   2996164 GGGGAGGAAAGCCCAGTACCAGGCAGCCTCTGCTCCATTGCTCTG-G--GGGGGTGG---GGAAGGCAAACCCTGGTCATCCCCTCAGTCTGTAGACCTTTTGTGTGAATGCTTGGCAAGGGTGACGT-GG-----GTCTGTTTCTGCG---GGCACAGCTGCAGCACTTACTGGAGTGGAGGCAGGGCCCAGGCAGCACTGCCCT-----CCCAGATCTTCCC-TCTGGCT-TTTCAGCAGTAAGGGGACATGCACCCCGAGGCCCTCCACTTGGCCTGACCCTGCTGTGGGGGC---TTTCTGTCCCCAGGAACGGTGGACATGGCAAGCTTATCAAGACCCTCTCTGCCCAGCTGcctctgctccttcctcctcctcctgctcctccAAGTGTCTTCCAGCTACGCAGGTAAGACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     577224 396 +    766320 GGGGAGGAAAGCCCAGTACCAGGCAGCCTCTGCTCCATTGCTCTG-GGAGGGGGTGG---GGAAGGCAAACCCTGGTCATCCCCTCAGTCTGTAGACCTTTTGTGTGAATGCCTGGCAAGGGTGACGT-GG-----GGCTGTTTCTGCG---GGCACAGCTGCAGCACTTACTGGAGTGGAGGCAGGGCCCAGGCAGCACTGCCCT-----CCCAGATCTTCCC-TCGGGCT-TTTCAGCAGTAAGGGGACATGCACCCCGAGGCCCTCCACTTGGCCTGACTCTGCTGTGGGGGC---TTTCTGTCCCCAGGAACGGTGGAGATGGCAAGCTTATCAAGACCCTCTCTGCCCAGCTGcctctgctccttcctcctcctcctgctcctccAAGTGTCTTCCAGCTACGCAGGTGAGACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29033729 394 -  71996105 GGGGAGGAAAGCCCAGTACCAGGCAGCCTCTGCTCCATTGCTCTG-G--GGGGGTGG---GGAAGGCAAACCCTGGTCATCCCCTCAGTCTGTAGACCTTTTGTGTGAATGCCTGGCAAGGGTGACGT-GG-----GGCTGTTTCTGCG---GGCACAGCTGCAGCACTTACTGGAGTGGAGGCAGGGCCCAGGCAGCACTGCCCT-----CCCAGATCTTCCC-TCGGGCT-TTTCAGCAGTAAGGGGACATGCACCCCAAGGGCCTCCACTTGGCCTGACCCTGCTGTGGGGGC---TTTCTGTCCCCAGGAACGGTGGACATGGCAAGCTTATCAAGCCCCTCTCTGCCCAGCTGcctctgctccttcctcctcctcctgctcctccGAGTGTCTTCCAGCTACGCAGGTAAGACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     225087 396 +    290775 GGGGAGGAAAGCCCAGTACCAGGCAGCCTCTGCTCCATTGCTCTG-GGAGGGGGTGG---GGAAGGCAAACCCTGGTCATCCCCTCAGTCTGTAGACCTTTTGTGTGAATGCCTGGCAAGGGTGACGT-GG-----GGCTGTTTCTGCG---GGCACAGCTGCAGCACTTACTGGAGTGGAGGCAGGGCCCAGGCAGCACTGCCCT-----CCCAGATCTTCCC-TCGGGCT-TTTCAGCAGTAAGGGGACATGCACCCCGAGGCCCTCCACTTGGCCTGACTCTGCTGTGGGGGC---TTTCTGTCCCCAGGAACGGTGGAGATGGCAAGCTTATCAAGACCCTCTCTGCCCAGCTGcctctgctccttcctcctcctcctgctcctccAAGTGTCTTCCAGCTACGCAGGTGAGACA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2672745 395 -   3067355 GGGGAGGAAAGCCCAGTACCAGGCAGCCTCTGCTCCATTGCTCTGTG--GGGGGTGG---GGAAGGCAAACCCTGGTCATCCCCTCAGTCTGTAGACCTTTTGTGTGAATGCCTGGCAAGGGTGACGT-GG-----GGCTGTTTCTGCG---GGCACAGCTGCAGCACTTACTGGAGTGGAGGCAGGGCCCAGGCAGCACTGCCCT-----CCCAGATCTTCCC-TCGGGCT-TTTCAGCAGTAAGGGGACATGCACCCCGAGGGCCTCCACTTGGCCTGACCCTGCTGTGGGGGC---TTTCTGTCCCCAGGAATGGTGGAGATGGCAAGCTTATCAAGACCCTCTCTGCCCAGCTGcctctgctccttcctcctcctcctgctcctccAAGTGTCTTCCAGCTATGCAGGTGAGACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      46725 387 +    132061 GGGGAGGAAAGCCCAGTACCAGGCAGCCTCTGCTCCATTGCTCTG-A--GGGGATGG---GGAAGGCAGACCCTGGTCATCCCGTCAGTCTGTAGCCCTTTTGTGTGAGTGCCTGGCAAGGGTGACGT-GG-----GGCTGTTCCTACA---GGCACAGCTGCATCACTGACCAGAGTGGAGGCAGGGCCCAGGCA-CACTGCCCT-----CCCAGATCTTCCA-TCGGGCT-TTTCAGTAGTAAGGGGACATGCACCCCAAGGGCCTCCGCTTGGCCTGACCCTGCAGTGGGGGC---TCTCTGTCCCCAGGCACAGTGGAGATGGCAAGCTTATCGAAACCCTCCCTGCCCAGCTACCTCTG---CT---TCCTCCTGCTCCTCCTCCATGTGTCTTCCAGCTACGGAGGTAAGACA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     266801 390 -   1771730 GGGGAGGAAAGCCCAGTACCAGGCAGCCTCTGCTCCATTGCTCTG-A--GGGGATGG---GGAAGGCAAACCCTGGTCATCCCCTCAGTCTGTAGCCCTTTTGTGTGAGTGCCTGGCAAGGGTGACGT-GG-----GGCTGTTCCTACG---GGCACAGCTGCAGCACTGACCAGAGTGGAGGCAGGGCCCAGGCA-CACTGCCCT-----CCCAGACCTTCCC-TCGGGCT-TTGCAGCAGTAAGGGGACATGCACCCCAAGGGCCTCTGCTTGGCCTGACCCTGCAGTGGGGGC---TCTCTGTCCCCAGGAACAGTGGAGATGGCAAACTTATCGAGACCCTCTCTGCCCAGCTGcctctgctcct---tcctcctgctcctcctccATGTGTCTTCCAGCTACACAGGTAAGACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     337627 390 -    457564 GGGGAGGAAAGCCCAGTGCCAGGCAGCCTCTGCTCCATTGCTTTG-A--GGGGATGG---GGAAGGCAAACCCCGGTCATCCCCTCAGTCTGTAGCCCTTTTGTGTGAGTGCCTGGCAAGGGTGACGT-GG-----GGCTGTTCCTACG---GGCACAGCTGCAGCACTGACCAGAGTGGAGGCAGGGCCCAGGCA-CACTGCCCT-----CCCAGACCTTCCC-TTGGGCT-TTTCAGCAGTAAGGGGACATGCACCCCAAGGGCCTCCGCTTGGCCTGACCCTGCAGTGGGGGC---TCTCTGTCCCCAGGAACAGTGGAAATGGCAAGCTTATCGAAACCCTCTCTGCCCAGCTGcctctgctcct---tcctcctgctcctcctccATGTGTCTTCCAGCTATGCAGGTAAGACA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               172072 382 + 123392446 GGGGGGGAAAGCCCAGTACCAGGCAGCCGCTGCTCCGTT-CCCCG-G--GGGGCGGG---GGGAGGC-AACCCTGGTCATGCCCTCGGTCTGTAGGCCTTTTGTATACGGGCCTGGCAAGGGTGACGT-GG-----GGCTGTTCCTACC---GGCACAGCTGTGGCA-CGGCCGGGGTGGAGGCAGGGCCTGGGCAGCGCTGCCGT------ACAGATCCTCCC-TCGGGCT-TTTCAGTGGC-ATGGGACATGTACCCCAAGGGCCTCTGCTTGGCCTGATGCTGCTGC-GGGGC---TCTCTGTCCCTAGGAACAGTGGAGATGGCAAGCTTAGCAAGCCCCTCTCTGCCCAGTTGcctcctctct------ctcctcgtcctcctccAGCTGCCTTCCAGCCATGCAGGTAAGACA
i micMur3.chr6             I 59 I 227
s proCoq1.NW_012152574v1     639423 393 +    730504 GGGGAGGAGAGCACAGTACCAGGCAGCCGCTGCTCCGTTGCTCTG-A--GGGGGTGG---GGCAGGCAAACCCTGGTCATGCCCTCGGTCTGTAGCCCTTTTGTATAAGGGCCTGGCAAGGGTGACGC-GG-----GGCTGTTCCTACC---GGCACAGCTGCGGCACCGGCCGGGGTGGAGGCAGGGCCTGGGCAGCACTGCCAT-----CCCAGATCCTACC-TCGGGCT-TTTCAGTGGTAAGGGGACATGTACCCCAAGGGCCTCTGCTTGGCCTGACCCTGCTGT-GGGGC---TCTCTGTCCCTAGGAACAGTGGAGATGGCAAGCTTAGCGAGCCCCTCTCTGCCCAGCTGcctcctctctctcctcctcctcttcctcctccAGCTGCCTTCCAGCCATGCAGGTAAGACG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           148695 384 +  18854210 GGGGAGGAAGGCCCAGTACCAGGCAGCCACTGCTCCATTGCCCTG-A--GGGGGTAG---GGATGGTAAATCCTGATCAAACCCTCAGTCTATAGCCCTTTTGTATAAGTGCCTGACAAGGGTGACGT-GG-----GGCTGTTCCTACG---GGCACAGCTGTGGCATCAGCCAGGGTGGAGGCAGGGCCTGGGCAGCACTGCCAT-----CCCCAGTCCTCTC-TCGGGCT-TTTCGGTAGTAACGGGACATGCACCCCAAAGGCCT---------TTGACCCTGCTGC-GGGGC---TCCCTGTCCTTAGGAACAGTGGAGATGGCACTCTTAGCAAGCCCCTCTCTGCCTAGCTGCTTCCTCTCGCTCTTCCTCCTACTCTTCCTCCAGCTGCCTTCCAGCCATGCAGGTAAGACA
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               57963776 391 -  94987271 -AAGAGAAATGCCCAGTACCAGGCAGCCACTGCTCCAGTGCTGTG-A--GGGGTTGGGTCGGAAAGCAAACCCTGGTCAT-CAATGGATCTGTAGTCCTTTTGTACAAATATCTGGCAAGGGTGACGT-GG-----GGCCATTCCTCAG---GGCACAGCTGTGGTAAT-GCTTACATGGAGGTTGGGCTTGGGCAGTAGTGCCCT-----CCCAGATTCTCCCTTCGGGCT-TCTTGGAGG--AAGGGACATGCAGCCGGAGGACCTCAGCTTGGCCTGACCCTGCTGTTAGGGA----CTCTGTCCCCGGTAACCATAAAGATGGCCTGTTTGTGGAGCTTCTCTTGGCCCAGCTGCTtcctctcccttctcctcctccttctcctccAGTTGTCATGCAGCTATGCAGGTAAG-CA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26256322 375 +  26524999 ------GGGGGCCCAGTACCAGGCAGCCTCTGCTCCATAGCTC-A-A--GGGGGTAG---GGATAGCAACTGCTGGTCACCCTCTGGGTCAGTAGCCCTTTTGTGTAAGTGCCTGGCAGTGATGACTC-AGCCAGTGATGACTTCCAAGCTCAGCACAGCTGTGGCCC--AGCCGAGAGGAGGC----------------TGCCCT-----CCTCAACCCTCCCCTCAGGCTGTGTCAGAGGT-TGGGGCCATGCACCCTGCAGGCTTCTGCCTGGCCTGACCCTGCTGCAGGGGTGCTCCTCTGTCCACAGTCACAGCTGAGATGGCAAGTCCATGGAGCTCCTCTCTGCCCAGCTGCCT------TCCCCTGCTCCTCTTCCTCCTCCAGCTGTCATGGAGTACTGCAGGTGAGATT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            77819 374 +    102524 -----GGGAGGCTCAGTACCAGGCAGCCCCCGCTCCAC--CCCCG-G--GGTG-------CGCAGGCCAAGCCTGGCCGTCCCTC--GTCTGTAGCCC-TTTGTGCAAGCGCCTG-CGGGGGTGACGC-GG-----GGCCG-TCCTCCG---GGCACAGCTGCGGCACTGGCCGGGGCGGAGGCAGGTCCCAGGCAGCACTGCCCCCCCCCCCCCGGCCTCCCT-GGAGACT-CTTCCCGGGGTGGGGGACACGCGCCCCGAGG-CCTCTGCTTGGCCTGACGCCACAGCGGGGGC---TCTCTGTCCCCAG-AACAGCGGCGATGGCGAGATTTCTGAGCCCAGCTCCGCGCAGCTGCCT--GCTCC----TGCTTCTCCTCCTCCTCCAGCTCTCCTCCAGCTCTGCAGGTAAGAC-
i dasNov3.JH582591         C 0 C 0

a score=594464.000000
s hg38.chr6_GL000254v2_alt   922686 57 +   4827813 TGTT---TTTTTTCCTGCCCTGGGGAGACCCTGAAAACAGAAAGGCTAGTTTCCTGGGGC
s panTro5.chr6             29885607 57 + 175400573 TGTT---TTTTTTCCTGCCCTGGGGAGACCCTGAAAACAGAAAGGCTAGTTTCCTGGGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30119920 57 + 173848474 TGTT---TTTTTTCCTGCCCTGGGGAGACCCTGAAAACAGAAAGGCTAGTTTCCTGGGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5918856 57 +   6154872 TTAT---TTTTTTCCTGTCCTGGGGAGACCCTGAAAACAGAAAGGCTAGTTTCCTGGGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74633430 56 + 122973662 tgg----ttttttcctgccctggggagaccctgaaaacagaaaggctagtttcctagggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30117521 56 + 172585720 TGT----TTTTTTCCTGCCCTGGGGAGACCCTGAAAACAGAAAGGCTAGTTTCCTGGGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29780599 56 - 170955103 TGT----TTTTTTCCTGCCCTGGGGAGACCCTGAAAACAGAAAGGCTAGTTTCCTGGGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2828120 56 -   2996164 TGT----TTTTTTCCTGCCCTGGGGAGACCCTGAAAACAGAAAGGCTAGTTTCCTGGGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     577620 56 +    766320 TGT----TTTTTTCCTGCCCTGGGGAGACCCTGAAAACAGAAAGGCTAGTTTCCTGGGTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29034123 56 -  71996105 TGT----TTTTTTTCTGCCCTGGGGAGACCCTGAAAACAGAAAGGCTAGTTTCCTGGGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     225483 56 +    290775 TGT----TTTTTTCCTGCCCTGGGGAGACCCTGAAAACAGAAAGGCTAGTTTCCTGGGTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2673140 56 -   3067355 TGT----TTTTTTCCTGCCCTGGGGAGACCCTGAAAACAGAAAGGCTAGTTTCCTGGGTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      47112 55 +    132061 TG-----TGTTTTCCTGCCCTGGGGAGACCCTGAGAACAGAAAGACTATTTTCATGGGGC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     267191 55 -   1771730 TG-----TGTTTTCCTGCCCTGGGGAGACCCTAAGAACAGACAGACTAGTTGCATGGGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     338017 55 -    457564 TG-----TGTTTTCCTGTCCTGGGGAGACCCTGAGAACAGAAAGACTAGTTTCATGGAGC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     639816 55 +    730504 CG-----TTTATTCCCGCCCTGGGGAGACCCCGAGAACAGAAAGGCTAATTTCCTGAGGC
i proCoq1.NW_012152574v1   C 0 I 250
s otoGar3.GL873550           149081 55 +  18854210 TG-----TTTATTCCTGCCCTGGAAAGACCCTGAGAACAGGAAAGCTGCTTTCCCGAGGA
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               57964167 52 -  94987271 TG-----CTCATTCCACCCCTGCAGAGA-CCTAGGAGCAGAAAGG-GAGTGTCCTTGGC-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26256697 57 +  26524999 ---TATCTTTACTTCTGCCTTGGGGAGACCCCAGCAACAGAAAGGCCATGTGCCTGGGCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            78193 33 +    102524 -----------TCCCCCCCGCCGGGAGAC-------------AGACC-GTGCCCTGGC--
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               172454 227 + 123392446 I

a score=953356.000000
s hg38.chr6_GL000254v2_alt   922743 87 +   4827813 TTAGCTCCTTCAAA-CATCCTCAAGTTGCTA----T----ATTATCTTTCTA---AAACATAGACCTACTGACATGCCTCCCTTCCTCAGAAACCTTC-C
s panTro5.chr6             29885664 87 + 175400573 TTAGctccttcaat-catcctcaagttgcta----t----attatctttcta---aaacatagacctgctgacatgcctcccttcctcagaaaccttc-c
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30119977 87 + 173848474 TTAGctccttcaat-catcctcaagttgcta----t----attatctttcta---aaacatagacctgctgacatgcctcccttcctcagaaaccttc-c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5918913 87 +   6154872 TTAGctccttcaat-catcctcaagttgcta----t----attatctttcta---aaacatagacctgctgacatgcctcccttcctcagaaaccttc-c
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74633486 87 + 122973662 tTAGctccttcaat-catcctcaagttgcta----t----attatctttcta---aaacatagacctgctgacatgcctcccttcctcagaaaccttc-c
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30117577 87 + 172585720 TTAGCTCCTTCAAT-CATCCTCAAGTTGCTA----T----ATTATCTTTCTG---AGACATAGACCTGCTGACATGCTTCCCTTCCTCAGAAACCTTC-C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29780655 87 - 170955103 TTAGCTCCTTCAAT-CATCCTCAAGTTGCTA----T----ATTATCTTTCTG---AGACATAGACCTGCTGACATGCTTCCCTTCCTCAGAAACCTTC-C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2828176 87 -   2996164 TTAGCTCCTTCAAT-CATCCTCAAGTTGCTA----T----ATTATCTTTCTG---AGACATAGACCTGCTGACATGCTTCCCTTCCTCAGAAACCTTC-C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     577676 87 +    766320 TTAACTCCTTCAAT-CATCCTCAAGTTGCTA----T----ATTATCTTTCTG---AAACATAGACCTGCTGACATGCTTCCCTTCCTCAGAAACCTTC-C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29034179 87 -  71996105 TTAGCTCCTTCAAT-CATCCTCAGGTTGCTA----T----ATTATCTTTCTG---AAACATAGACCTGCTGACATGCTTCCCTTCCTCAGAAACCTTC-C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     225539 87 +    290775 TTAACTCCTTCAAT-CATCCTCAAGTTGCTA----T----ATTATCTTTCTG---AAACATAGACCTGCTGACATGCTTCCCTTCCTCAGAAACCTTC-C
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2673196 87 -   3067355 TTAGCTCCTTCAAT-CATCCTCAAGTTGCTA----T----ATTATCTTTCTG---AAACATAGACCTGCTGACATAGTTCCCTTCCTCAGAAACCTTC-C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      47167 87 +    132061 TTAACTCCTTCAAT-CATCCTCAAGTTGCTA----T----ATTATCTTTCTG---AAGCATAGACCTGCTGACATGGCTCCGTTCCTCAGAAACCTTC-T
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     267246 87 -   1771730 TTAGctccttcagt-catcctcaagttgcta----t----attatctttctg---aagcatagacctgctgacatggctcccttcctcagaagccttt-t
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     338072 87 -    457564 TTAGctccttcaat-catcctcaagttgcta----t----attatctttctg---aagcatagacctgctgacatggctcccttcctcagaaaccttc-t
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           149136 82 +  18854210 TCTACTCCTTCAAT-CCTCCTCCAGTGA------------GTTACCTTTCta---agtc--agatttcctggcatggttctcttcctcagaaaccttcaa
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57964219 90 -  94987271 TAACCTCTTTTAAT-CATCCTCAAATGGCTA----T----ACAAACTTCCTGTTTATGCTTGGGTCTGTTGGCATAGTCTCTCTCCTTAAAGGCCTTC-C
i mm10.chr17               C 0 I 103
s canFam3.chr35            26256754 91 +  26524999 CATGGCCTGCCACT-CATCCTCCAGCAGTCT----TGCCGgtgatgggtcca---gaacacaggtgtgctgacaggattctcctcctcagaaaccttc-c
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            78226 88 +    102524 TCACCTTTGTCCATGCAGCCTCAAA-GGCTACACGT----GCTAGTTTTCTA---AAGC--AGATCTGTGGACACCGTTACCC-CCTCCGAAAGCTTC-G
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               172454 227 + 123392446 I
e proCoq1.NW_012152574v1     639871 250 +    730504 I

a score=216142.000000
s hg38.chr6_GL000254v2_alt   922830 22 +   4827813 GTGGGTGGTTCTTACAGCCTTC
s panTro5.chr6             29885751 22 + 175400573 gtggGTGGTTCTTACAGCCTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30120064 22 + 173848474 gtggGTGGTTCTTACAGCCTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5919000 22 +   6154872 gtggGTGGTTCTTACAGCGTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74633573 22 + 122973662 gtggGTGGTTCTTACAGCCTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30117664 22 + 172585720 GTGGGTGGTTCTTACAGCCTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29780742 22 - 170955103 GTGGGTGGTTCTTACAGCCTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2828263 22 -   2996164 GTGGGTGGTTCTTACAGCCTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     577763 22 +    766320 GTGGGTGGTTCTTACAGCCTTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29034266 22 -  71996105 GTGGGTGGTTCTTACAGCCTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     225626 22 +    290775 GTGGGTGGTTCTTACAGCCTTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2673283 22 -   3067355 GTGGGTAGTTCTTACAGCCTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      47254 19 +    132061 GTGG---GTTCTTACAGCCTTC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     267333 19 -   1771730 gtag---gttcttacagccttc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     338159 19 -    457564 gtgg---gttcttacagccttc
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           149218 19 +  18854210 gtgg---cttcttatagccttc
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26256845 18 +  26524999 ----ttggctcccaagggcttc
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            78314 19 +    102524 GTGG---CTGCCCACAGCCTCC
i dasNov3.JH582591         C 0 I 27
e micMur3.chr6               172454 227 + 123392446 I
e mm10.chr17               57964309 103 -  94987271 I
e proCoq1.NW_012152574v1     639871 250 +    730504 I

a score=58549.000000
s hg38.chr6_GL000254v2_alt   922852 7 +   4827813 AAGATGG
s panTro5.chr6             29885773 7 + 175400573 AAGATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30120086 7 + 173848474 AAGATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5919022 7 +   6154872 AAGATGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74633595 7 + 122973662 AAGATGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30117686 7 + 172585720 AAGATGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29780764 7 - 170955103 AAGATGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2828285 7 -   2996164 AAGATGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     577785 7 +    766320 AAGATGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29034288 7 -  71996105 AAGATGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     225648 7 +    290775 AAGATGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2673305 7 -   3067355 AAGATGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      47273 7 +    132061 ACGACTG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     267352 7 -   1771730 acgatag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     338178 7 -    457564 acgatag
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           149237 7 +  18854210 caaacaa
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26256863 7 +  26524999 agaatgg
i canFam3.chr35            C 0 C 0
e micMur3.chr6               172454 227 + 123392446 I
e mm10.chr17               57964309 103 -  94987271 I
e dasNov3.JH582591            78333 27 +    102524 I
e proCoq1.NW_012152574v1     639871 250 +    730504 I

a score=1431839.000000
s hg38.chr6_GL000254v2_alt   922859 162 +   4827813 AGTCCAGACTC---------------ttttttttttttgagacagagtctccctctgttgctcaggctggagtgcagtggcatgatctcggctcactgcaacctcagcctccctggttcaagc---gattctcctgacttggcctccc-----aagtagcggagactacaggcgcctgccaccac
s panTro5.chr6             29885780 162 + 175400573 AGTCCAGACTC---------------ttttttttttttgagacagagtttccctctgttgctcaggctggagtgcagtggcatgatctcggctcactgcaacctcagcctccctggttcaagc---gattctcctgacttggcctccc-----aagtagcggagactacaggtgcctgccaccac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30120093 160 + 173848474 AGTCCAGACTC-----------------ttttttttttgagacagagtttccctctgttgctcaggctggagtgcagtggcatgatctcggctcactgcaacctcagcctccctggttcaagc---gattctcctgacttggcctccc-----aagtagcggagactacaggcgcctgtcaccac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5919029 162 +   6154872 AGTCCAGACTC---------------ttttttttttttgagacagagtctccctctgttgctcaggctggagtgcagtggcatgatctcggctcactgcaacctcagcctccctggttcaagc---aattctcctgccttggcctccc-----aagtagcggagactacaggcgcctgccaccac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74633602 162 + 122973662 AGTCCAGACTC---------------ttttttttttttgagacagagtctccctctgttgctcaggctggagtgcagtggcatgatctcagctcactgcaacctcggcctccctggttcaagt---gattctcctaccttggcctccc-----aagtagcggagactacaggcacctgccaccac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30117693 166 + 172585720 AGTCCAGACTC-----------ttttttttttttttttgagacagagtctccctctgttgctcaggctggagtgcagtggcatgatctcggctcactgcaacctcagcctccctggttcaagc---gattctccagccttggcctccc-----gagtagctgagactacaggcgcctgccaccaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29780771 167 - 170955103 AGTCCAGACTC----------tttttttttttttttttgagacagagtctccctctgttgctcaggctggagtgcagtggcatgatctcggctcactgcaacctcagcctccctggttcaagc---gattctccagccttggcctccc-----gagtagctgagactacaggtgcctgccaccaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2828292 175 -   2996164 AGTCCAGACTC-------ttttttttttttttttttttgagacagagtctccctctgttgctcaggctggagtgcagtggcatgatctcggctcactgcaacctctgtttcctgggtccaggc---aattctcctgcctcagcctcccgagtagagtagctgagactacaggcgcctgccaccaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     577792 173 +    766320 AGTCCAGACTCtt----tttttttttttttttttttttgagacaaagtctccctctgttgctcaggctggagtgcagtggcatgatctcggctcactgcaacctcagcctccctggttcaagt---gattctccggccttggcccccc-----gagtagctgagactacaggcacctgccaccaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29034295 177 -  71996105 AGTCCAGACTCtttttttttttttttttttttttttttgagacagagtctccctctgttgctcaggctggagtgcagtggcatgatctcggctcactgcaacctcagcctccctggttcaagc---gattctccggccttggcctccc-----gagtagctgagactacagacacctgccaccaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     225655 169 +    290775 AGTCCAGAC--------tttttttttttttttttttttgagacagagtctccctctgttgctcaggctggagtgcagtggcatgatctcggctcactgcaacctcaacctccctggttcaagt---gattctccggccttggcccccc-----gagtagctgagactacaggcccctgccaccaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2673312 164 -   3067355 AGTCCAGACTC-------------ttttttttttttttgagacagagtctccctctgttgctcaggctggagtgcagtggtatgatcttggctcactgcaacctcaacctccttggttcaagc---gattctccggccttggcctccc-----gagtagctgagactacaggtgcctgccaccaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      47280 159 +    132061 AGTCCAGACTC------------------tttttttttgagacggagtctccctcttttgccgacgctggagtgtagtggttctaactcaactcactgcaacctctgcctcctgagttcaagt---aattctcctgcctcagcctccc-----gagtagctgggattacagatgcctgccaccac
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     267359 156 -   1771730 agtccagaC---------------------ttttttttgagacagagtatccctctgttgcccaagctggaatgcagtggctcgatctcagctcactgcaacctccgtctcctgggttcaagt---aattctcctgcctcagcctccc-----gagtagctgggattacagatgcctgccaccac
i cebCap1.NW_016107755v1   C 0 I 836
s aotNan1.NW_018509740v1     338185 158 -    457564 agtccagattc-------------------ttttttttgagacagagtctccctctgttgcccaagctggagtgcagtggcttgatctcagctcactgcaacctctgcctcctgggttcaagt---aattctcctgcctcagcctccc-----gagtagctgggattacagacacctgccaccac
i aotNan1.NW_018509740v1   C 0 I 7
s otoGar3.GL873550           149244 162 +  18854210 aatccaaactc---------------tttttttttttagagacagagtcacattttgtcgtcctcggtagagtgctgtgacatta---cggctcacgacaaccttcagctcttgggcttaggcgatgattcttttgcctcagcctccc-----aagcagctgggactacaggcacctgccacagt
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               172454 227 + 123392446 I
e mm10.chr17               57964309 103 -  94987271 I
e dasNov3.JH582591            78333  27 +    102524 I
e proCoq1.NW_012152574v1     639871 250 +    730504 I
e canFam3.chr35            26256870   0 +  26524999 C

a score=47048.000000
s hg38.chr6_GL000254v2_alt   923021 7 +   4827813 acccagc
s panTro5.chr6             29885942 7 + 175400573 gcccagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30120253 7 + 173848474 gcccagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5919191 7 +   6154872 gcccagc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74633764 7 + 122973662 gcctagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30117859 7 + 172585720 gcccagt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29780938 7 - 170955103 gcccagt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2828467 7 -   2996164 gcccagt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     577965 7 +    766320 gcccagt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29034472 7 -  71996105 gcccagt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     225824 7 +    290775 gcccagt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2673476 7 -   3067355 gcccagt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      47439 7 +    132061 ccctggc
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           149406 7 +  18854210 gcccagc
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               172454 227 + 123392446 I
e mm10.chr17               57964309 103 -  94987271 I
e dasNov3.JH582591            78333 27 +    102524 I
e proCoq1.NW_012152574v1     639871 250 +    730504 I
e canFam3.chr35            26256870 0 +  26524999 C
e aotNan1.NW_018509740v1     338343 7 -    457564 I
e cebCap1.NW_016107755v1     267515 836 -   1771730 I

a score=754332.000000
s hg38.chr6_GL000254v2_alt   923028 160 +   4827813 taaattttttcttttcttt-tttttttttttttttttgtattttagtacagacggggtttcacatgttggccaggatggtctcgatctcttgacctgctgatccgcccgcctcagcttcccaaagtactgggattatgggcgtgagccactgcactaggcc
s panTro5.chr6             29885949 161 + 175400573 taaattttttcttttttttctttttttttttttttttgtattttagtacagacggggtttcacacgttggccaggatggtctcgatctcttgacctgctgatccgcccgcctcggcttcccaaagtactgggattacaggcgtgagccactgcgctaggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30120260 153 + 173848474 taaatttttctt--------ttcttttttttttttttgtattttagtacagacggggtttcacacgttggccaggatggtctcgatctcttgacctgctgatccgcccgcctcggcttcccaaagtactgggattacaggcgtgagccactgcgctaggcc
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01015250v1    5919198 159 +   6154872 taaattttttcttttctt--ttttcttttttttttttgtattttagtacagacggggtttcacatgttggccaggatggtctcgatctcttgacctgctgatccgcccgcctcggcttcccaaagtactgggattacaggcgtgagccactgcgctaggcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74633771 146 + 122973662 taaat---------------tttttctttttttttttgtattttagtagagacggggtttcacatgttggccaggatggtcttgatttcctgacctgctgatccgcccgcctcagcttcccaaagtactgggattacaggcgtgagccactgcgccaggcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30117866 144 + 172585720 taa-----------------ttttttcttctttttttgtattttagtagagacagggtttcacaaattggccaggatggtctcaatctcctgacctgctgatccggccacctcagcttcccaaagtactgggattgcaggtgtgagccactgcacccagcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29780945 144 - 170955103 taa-----------------tttttttttctttttttgtattttagtagagacagggtttcacaaattggccaggatggtctcaatctcctgacctgctgatccggccacctcagcttcccaaagtactgggattgcaggtgtgagccactgcacccagcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2828474 144 -   2996164 taa-----------------tatttttttctttttttgtattttagtagagacagggtttcacaaattggccaggatggtctcaatctcctgacctgctgatccggccacctcagcttcccaaagtactgggattgcaggtgtgagccactgcacccagcc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     577972 145 +    766320 taat----------------tttttttttctttttttgtattttagtagaaacagggtttcacaaattggccaggatggtctcaatctcctgacctgctgatccggccgcctcagcttcccaaagtactgggattgcaggtgtgagccactgcacccagcc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29034479 144 -  71996105 taa-----------------tttttttttctttttttgtattttagtagagacagggtttcacaaattggccaggatggtctcaatctcctgacctgctgatccggccgcctcagcttcccaaagtactgggattgcaggtgtgagccactgcacccagcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     225831 145 +    290775 taat----------------tttttttttctttttttgtattttagtagagacagggtttcacaaattggccaggatggtctcaatctcctgacctgctgatccggccgcctcagcttcccaaagtactgggattgcaggtgtgagccactgcacccagcc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2673483 145 -   3067355 taat----------------tttttttttctttttttgtattttagtagagacagggtttcacaaattggccaggatggtctcaatctcctgacctgctgatccggccacctcggcttcccaaagtactgggattgaaggtgtgagccactgcgcccagcc
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           149413  65 +  18854210 -------------------------tatttttttgctgcagtttggccgagactgggtttga--------------------------------------acccgccaccctcagtat---------atggggctga------------------------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               172454 227 + 123392446 I
e mm10.chr17               57964309 103 -  94987271 I
e dasNov3.JH582591            78333  27 +    102524 I
e proCoq1.NW_012152574v1     639871 250 +    730504 I
e canFam3.chr35            26256870   0 +  26524999 C
e aotNan1.NW_018509740v1     338343   7 -    457564 I
e cebCap1.NW_016107755v1     267515 836 -   1771730 I
e calJac3.chrUn_GL286223      47446   0 +    132061 C

a score=888968.000000
s hg38.chr6_GL000254v2_alt   923188 132 +   4827813 taattttttt--atttttagtag-----agatggggtttcaccatgttggccaggctggtctggaacccctgacctcaagtggtctgccctcctcagcctcccaaagtgctgagattacaggcatgagccattgcgtct
s panTro5.chr6             29886110 132 + 175400573 taattttttt--atttttagtag-----agatggggtttcaccatgttggccaggctggtctggaacccgtgacctcaagtggtctgccctcctcagcctcccaaagtgctgagattacaggcatgagccattgcgtct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30120414 135 + 173848474 taattttttt--attttt--tagttagtagatggggtttcaccatgttggccaggctggtctggaacccctgacctcaagtggtctgccctcctcagcctcccaaagtgctgagattacaggcatgagccattgcgtct
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01015250v1    5919357 132 +   6154872 taattttttt--atttttagtag-----agatggggtttcaccatgttggccaggctggtctggaacccctgacctcaagtggtctgccctcctcagcctcccaaagtgctgggattacaggcatgagccactgcgtct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74633917 132 + 122973662 taatttttta--atttttagtag-----agacggggtttcaccatgttggccaggctggtctggaacccctgacctcaagtgatctgccctcctcagcctcccaaagtgctgggattacaggcatgagccactgcgccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118010 133 + 172585720 TAATttttttt-atttttagtag-----agacgtggtttcaccatgttggccaggccgttcttgaactcctgacctcaagtaatctgccctcctcaacctcccaaagtgctgggattataggcatgagccactgcaccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781089 133 - 170955103 TAATttttttt-atttttagtag-----agacgtggtttcaccatgttggccaggccgttcttgaactcctgacctcaagtaatctgccctcctcaacctcccaaagtgctgggattataggcatgagccactgcaccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2828618 133 -   2996164 TAATttttttt-atttttagtag-----agacgtggtttcaccatgttggccaggccgttcttgaactcctgacctcaagtaatctgccctcctcaacctcccaaagtgctgggattataggcatgagccactgcaccc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578117 133 +    766320 taattttttttaatttttagtag-----agacgtggtttcaccatgttggccaggctgttcttgaactcctgacctcaagtaatctgccctcctcaacctcccaaagtgctgggattataggcat-agccagtgcaccc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29034623 133 -  71996105 TAATttttttt-atttttagtag-----agacgtggtttcaccatgttggccaggctgttcttgaactcctgacctcaagtaatctgccctcctcaacctcccaaagtgctgggattataggcatgagccactgcaccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     225976 134 +    290775 taattttttttaatttttagtag-----agacgtggtttcaccatgttggccaggctgttcttgaactcctgacctcaagtaatctgccctcctcaacctcccaaagtgctgggattataggcatgagccagtgcaccc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2673628 133 -   3067355 TAATttttttt-atttttagtag-----agatgtggtttcaccatgttggccaggctgttcttgaactcctgacctcaagtaatctgccctcctcaacttcccaaagtgctgggattataggcatgagccactgcaccc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      47446 132 +    132061 taatttttgt--atttttagcag-----tcatggggtttcaccatgttgaccagactagtctcaaactcctgacttcaagtgatcagccttcctcagactcccaaagtgctgggattacaggcgtgagccaccgcgtct
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     338350 132 -    457564 taatttttgt--atttttagcag-----acatggggtttcaccatgttgaccagactagtctcaaactcctgacttcaagtgatcagccctcctcagactcccaaagtgctgggattacaggcgtgagccaccgagtct
i aotNan1.NW_018509740v1   I 7 C 0
s otoGar3.GL873550           149478  33 +  18854210 ---------------------------------------caccctattcaccgagcc------------------------------------------------------------acaggcg-------ctgcccag
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               172454 227 + 123392446 I
e mm10.chr17               57964309 103 -  94987271 I
e dasNov3.JH582591            78333  27 +    102524 I
e proCoq1.NW_012152574v1     639871 250 +    730504 I
e canFam3.chr35            26256870   0 +  26524999 C
e cebCap1.NW_016107755v1     267515 836 -   1771730 I

a score=382766.000000
s hg38.chr6_GL000254v2_alt   923320 41 +   4827813 gaccCAGACTCCTTAATGTGAC--TAACTCAAGGCTTTccttg
s panTro5.chr6             29886242 41 + 175400573 gaccCAGACTCCTTAATGTGAC--TAACTCAAGGCTTTccttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30120549 41 + 173848474 gaccCAGACTCCTTAATGTGAC--TAACTCAAGGCTTTccttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5919489 41 +   6154872 gaccCAGACTCCTTAATGCGAC--TAACTCAAGGCTTTccttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634049 41 + 122973662 gaccCAGACTCCTTAATGTGAC--TAACTCAAGGCTTTccttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118143 41 + 172585720 ggccCAGACTCCTTAATGTGAC--TAACTCAAGGCTTTCCTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781222 41 - 170955103 ggccCAGACTCCTTAATGTGAC--TAACTCAAGGCTTTCCTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2828751 41 -   2996164 ggccCAGACTCCTTAATGTGAC--TAACTCAAGGCTTTCCTTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578250 41 +    766320 ggccCAGACTCCTTAATGTGAC--TAACTCAAAGCTTTTCTTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29034756 41 -  71996105 ggccCAGACTCCTTAATGTGAC--TAACTCAAGGCTTTTCTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226110 41 +    290775 ggccCAGACTCCTTAATGTGAC--TAACTCAAGGCTTTTCTTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2673761 41 -   3067355 ggccCAGACTCCTTAATGTGAC--TAACTCAAGGCTTTCCTTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      47578 41 +    132061 ggccCAGACTCTTTAATGTGAC--TAACTCAAGTCGTTctttg
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     338482 41 -    457564 ggctcagactctttaatgtgac--taactcaagtccttccttg
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           149511 43 +  18854210 aatccaaactctttaatgtgactttaacttgaggccttccttg
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26256870 43 +  26524999 gaaccaaactccataatgtggctttcagtcaagattccccctg
i canFam3.chr35            C 0 C 0
e micMur3.chr6               172454 227 + 123392446 I
e mm10.chr17               57964309 103 -  94987271 I
e dasNov3.JH582591            78333 27 +    102524 I
e proCoq1.NW_012152574v1     639871 250 +    730504 I
e cebCap1.NW_016107755v1     267515 836 -   1771730 I

a score=73445.000000
s hg38.chr6_GL000254v2_alt   923361 8 +   4827813 aactactt
s panTro5.chr6             29886283 8 + 175400573 aactactt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30120590 8 + 173848474 aactactt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5919530 8 +   6154872 aactagtt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634090 8 + 122973662 aactagtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118184 8 + 172585720 AACTAGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781263 8 - 170955103 AACTAGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2828792 8 -   2996164 AACTAGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578291 8 +    766320 AACTAGTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29034797 8 -  71996105 AACTAGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226151 8 +    290775 AACTAGTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2673802 8 -   3067355 AACTAGTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      47619 8 +    132061 aactagtt
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     338523 8 -    457564 aactagtt
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           149554 8 +  18854210 aactagcg
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57964412 8 -  94987271 aactaagc
i mm10.chr17               I 103 C 0
s canFam3.chr35            26256913 8 +  26524999 agctcatt
i canFam3.chr35            C 0 C 0
e micMur3.chr6               172454 227 + 123392446 I
e dasNov3.JH582591            78333 27 +    102524 I
e proCoq1.NW_012152574v1     639871 250 +    730504 I
e cebCap1.NW_016107755v1     267515 836 -   1771730 I

a score=20544.000000
s hg38.chr6_GL000254v2_alt   923369 8 +   4827813 cttacttg
s panTro5.chr6             29886291 8 + 175400573 cttacttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30120598 8 + 173848474 cttacttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5919538 8 +   6154872 cttacttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634098 8 + 122973662 cttacttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118192 5 + 172585720 CTTAC---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781271 5 - 170955103 CTTAC---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2828800 5 -   2996164 CTTAC---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578299 5 +    766320 CTTAC---
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29034805 5 -  71996105 CTTAC---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226159 5 +    290775 CTTAC---
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2673810 5 -   3067355 CTTAC---
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      47627 8 +    132061 cttacctg
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     338531 8 -    457564 cttacctg
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           149562 8 +  18854210 ctcatcta
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57964420 8 -  94987271 tctatctg
i mm10.chr17               C 0 I 3
s canFam3.chr35            26256921 3 +  26524999 ttt-----
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            78360 8 +    102524 Ctcacctg
i dasNov3.JH582591         I 27 C 0
e micMur3.chr6               172454 227 + 123392446 I
e proCoq1.NW_012152574v1     639871 250 +    730504 I
e cebCap1.NW_016107755v1     267515 836 -   1771730 I

a score=627962.000000
s hg38.chr6_GL000254v2_alt   923377 77 +   4827813 tctt--tccagctttgtcttttcacctctcaaattgagataaaataataacaacctct-tggagttctcatcaggattac
s panTro5.chr6             29886299 77 + 175400573 tctt--tccagctttgtcttttcacctctcaaattgagataaaataataacaacctct-tggagttctcatcaggattac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30120606 77 + 173848474 tctt--tccagctttgtcttttcacctctcaaattgagataaaataataacaacctct-tggagttctcatcaggattac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5919546 77 +   6154872 tctt--tccagctttgtcttttcacctctcaaattgagataaaataataacaacctct-tggagttctcatcaggattac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634106 77 + 122973662 tctt--tccagctttgtcttttcacctctcaaattgagattaaataataacaacctct-tggagttctcatcagaattac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118197 66 + 172585720 -------------TTgtcttttcacctctcaaattgagataaaatcatagcaacttct-tggagtacccatcaggattac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781276 66 - 170955103 -------------TTgtcttttcacctctcaaattgagataaaatcatagcaacttct-tggagtacccatcaggattac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2828805 66 -   2996164 -------------TTgtcttttcacctctcaaattgagataaaatcatagcaacttct-tggagtacccatcaggattac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578304 66 +    766320 -------------TTgtcttttcacctctcaaattgagataaaataatagcaacctct-tggagtacccatcaggattac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29034810 66 -  71996105 -------------TTgtcttttcacctctcaaattgagacaaaataatagcaacttct-tggagcacccatcaggattac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226164 66 +    290775 -------------TTgtcttttcacctctcaaattgagataaaataatagcaacctct-tggagtacccatcaggattac
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2673815 66 -   3067355 -------------TTgtcttttcacctctcaatttgagataaaagaatagcaacctct-tggagttcccatcaggattac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      47635 77 +    132061 tctt--tccagctttgtcttttcacctctcaaactgagataaaataatcacaacctct-tggagttctcatcaggattac
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     338539 77 -    457564 tctt--tccagctttgtcttttcacctctcaaattgagataaaataatcacaacctct-tggagttctcatcaggattac
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               172681 74 + 123392446 tctt--tccagcttcagcctttcatctctcaaagggggataaaataat---aacctct-tgaagctgttgtcagggtaaa
i micMur3.chr6             I 227 C 0
s otoGar3.GL873550           149570 74 +  18854210 tctt--tgccactttggcttttcatctcttaaacagggaaaaaataat---aatctct-tgaaattgttatcagggttaa
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57964431 71 -  94987271 cccTAGTTTCGTTTCCttttttcatcgttcaa--------aagaggacactaacttct-tggagttaccgtcagagttaa
i mm10.chr17               I 3 C 0
s canFam3.chr35            26256924 76 +  26524999 tgtt--tcccgctttgtggtctcaccAAC--AGTGGAGATAGACTAACAACAGCTTCTGGGGGGCTGAGGTCAGGGTTGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            78368 71 +    102524 cctc--tcctgccctggtttctcacctgt-aaacggggat----tatgagcagcccct-tgg-gtggcggtcaggactca
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     639871 250 +    730504 I
e cebCap1.NW_016107755v1     267515 836 -   1771730 I

a score=262081.000000
s hg38.chr6_GL000254v2_alt   923454 32 +   4827813 atgaaatgagatatgtaacatgctta-----gcagtg
s panTro5.chr6             29886376 32 + 175400573 atgaaatgagatatgtaacatgctta-----gcagtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30120683 32 + 173848474 atgaaatgagatatgtaacatgctta-----gcagtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5919623 32 +   6154872 atgaaatgagatatgtaacatgctta-----gcagtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634183 27 + 122973662 atgaa-----atatgtaacatgctta-----gcagtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118263 23 + 172585720 atgagatt---------acatgctta-----gcagtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781342 23 - 170955103 atgagatt---------acatgctta-----gcagtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2828871 23 -   2996164 atgagatt---------acatgctta-----gcagtg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578370 23 +    766320 atgagatt---------acatgctta-----gcagtg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29034876 23 -  71996105 atgagatt---------acatgctta-----gcagtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226230 23 +    290775 atgagatt---------acatgctta-----gcagtg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2673881 32 -   3067355 atgagatgagatatgtaacatgctta-----gcagtg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      47712 32 +    132061 acaagatgagacatgtaacatgctta-----gcagtg
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     338616 32 -    457564 atgagatgagatatgtaacgtgctta-----gcagtg
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               172755 32 + 123392446 atgagatgatatatatgacatgctta-----gcagtg
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     640121 32 +    730504 atgagatgagatgtatgacatgctta-----gcagtg
i proCoq1.NW_012152574v1   I 250 C 0
s otoGar3.GL873550           149644 32 +  18854210 acgagacaagatatctgacatgctta-----gccatg
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57964502 37 -  94987271 gtgagagtatttttgtactttgcacattaaggcaatg
i mm10.chr17               C 0 C 0
s canFam3.chr35            26257000 31 +  26524999 ACAGGACAGGGTATGT-ATGTGCTGA-----GCGGTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            78439 32 +    102524 gtgagacgagacacggaacacacctg-----gcggtg
i dasNov3.JH582591         C 0 C 0
e cebCap1.NW_016107755v1     267515 836 -   1771730 I

a score=484438.000000
s hg38.chr6_GL000254v2_alt   923486 36 +   4827813 cctgtcc-atagt-aaatctcaataaatgtttgtggaa
s panTro5.chr6             29886408 36 + 175400573 cctgtcc-atagt-aaatctcaataaatgtttgtggaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30120715 36 + 173848474 cctgtcc-atagt-aaatctcaataaatatttgtggaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5919655 36 +   6154872 cctgtcc-atagt-aaatctcaataaatgtttgtggaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634210 36 + 122973662 cctgtcc-atagt-aaatctcaataaatgtttgtGGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118286 36 + 172585720 tctgtcc-atagt-aaatctcaataaatgtttgtggaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781365 36 - 170955103 tctgtcc-atagt-aaatctcaataaatgtttgtGGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2828894 36 -   2996164 tctgtcc-atagt-aaatctcaataaatgtttgtggaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578393 36 +    766320 tctgtcc-atagt-aaatctcaataaatgtttgtggaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29034899 36 -  71996105 tctgtcc-atagt-aaatctcaataaatgtttgtGGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226253 36 +    290775 tctgtcc-atagt-aaatctcaataaatgtttgtggaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2673913 36 -   3067355 tctgtcc-atagt-aaatctcaataaatgtttgtggaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      47744 36 +    132061 cctatcc-acagt-aaatctcaataaatgtttgtGGAA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              111 36 -    110772 ccggcTC-ACAGT-AAATCTCAATAAATGTTTGTGAAA
i saiBol1.JH378388         N 0 C 0
s aotNan1.NW_018509740v1     338648 36 -    457564 ccggtcc-acagt-aaatctcaataaatgtttgtGGAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               172787 36 + 123392446 cctgtcc-atagt-aaatctcaaaaaaagtttgtGGAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     640153 35 +    730504 cctgtcc-atagt-aaatctc-gaaaaagtttgtGGAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           149676 36 +  18854210 cctaacc-atagg-aaatctcaaAAGAATTTTGTTAAA
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57964539 36 -  94987271 cctgttt-gtagc-agatctcaataaatgtttgttGAg
i mm10.chr17               C 0 I 112
s canFam3.chr35            26257031 31 +  26524999 CCTGCCC--CAAT-GGGTCCTGCTGAGTGTT----GCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            78471 38 +    102524 cctgtcccgcggtgaaggctcagtgaacattggtagag
i dasNov3.JH582591         C 0 C 0
e cebCap1.NW_016107755v1     267515 836 -   1771730 I

a score=657984.000000
s hg38.chr6_GL000254v2_alt   923522 47 +   4827813 tTATAATATCTTGTCATGTTTGAGACTT-TGCTCTGCATAATCAGGCA
s panTro5.chr6             29886444 47 + 175400573 ttATAATATCTTGTCATGTTTGAGACTT-TGCTCTGCCTAATCAGGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30120751 47 + 173848474 ttATAATATCTTGTCATGTTTGAGACTT-TGCTCTGCCTAATCAGGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5919691 47 +   6154872 ttATAATATCTTGTCATGTTTGAGACTT-TGCTCTGCATAATCAGGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634246 47 + 122973662 TTATAATATCTTGTCATGTTTGAGACTT-TGCTCTGCATAATCAGGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118322 47 + 172585720 ttATCATATCTTGTCATGTTTGAGACTT-TGCTCTGCATAATCACGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781401 47 - 170955103 TTATCATATCTTGTCATGTTTGAGACTT-TGCTCTGCATAATCACGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2828930 47 -   2996164 ttATCATATCTTGTCATGTTTGAGACTT-TGTTCTGCATAATCACGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578429 47 +    766320 ttATAATATCTTGTCATGTTTGAGACTT-TGCTCTGCATAATCAGGCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29034935 47 -  71996105 TTATCATATCTTGTCATGTTTGAGACTT-TGCTCTGCATAATCAGGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226289 47 +    290775 ttATCATATCTTGTCATGTTTGAGACTT-TGCTCTGCATAATCAGGCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2673949 47 -   3067355 ttATAATATCTTGTCATGTTTGAGACTT-TGCTCTGCATAATCAGGCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      47780 47 +    132061 TTCTAATATCTTGTCATGTTTGAGGGTT-TGCTCTGCATAATCAGGTA
i calJac3.chrUn_GL286223   C 0 I 310
s saiBol1.JH378388              147 47 -    110772 TTATAATATCTTGTCATGTTTGAAAGTT-TGCTCTGCATAATTAGGTA
i saiBol1.JH378388         C 0 C 0
s aotNan1.NW_018509740v1     338684 47 -    457564 TTATAATATCTTATCATGTTTGAGGGTT-TGCTCTGCATAATCAGGTA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               172823 47 + 123392446 TGATAATATCATGTCATATTTGAGAGTT-TGCTCTGCATAATCGGGCA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     640188 47 +    730504 TGATAATATCGTGTCATGTTTGAGAGTT-TTCTCTGCATAATCAGGCA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           149713 47 +  18854210 TAACAGTATCTTGTCATGTTTGAGAGTT-TGCTCTGCATAATCAGGCA
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57964687 47 -  94987271 TTATAGCATCGAGTTATGTTTGAGAACT-TGCTCTGCAGAATAAGGCA
i mm10.chr17               I 112 C 0
s canFam3.chr35            26257062 46 +  26524999 TGGCAGCATCTCGTC-TTTTGGGAGCTC-TCTTCCACACGACCAAGCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            78509 45 +    102524 --ctgtgatCTTGTCCAGCTTGAGGGCTATGCTCCGTG-ACTCAGGCA
i dasNov3.JH582591         C 0 C 0
e cebCap1.NW_016107755v1     267515 836 -   1771730 I

a score=809145.000000
s hg38.chr6_GL000254v2_alt   923569 88 +   4827813 CCAGTAGGTTTTTATAAAGGAACCCGGCTGTCACGTGCAGAGGAGAAATAAA-----CAGAA---AGTTTCCCATCCTCAG----GGAGCCACCTGACTG
s panTro5.chr6             29886491 88 + 175400573 CCAGTAGGTTTTTATAAAGGAACCCGGCTGTCACGTGCAGAGGAGAAATAAA-----CAGAA---AGATTCCCATCCTCAG----GGAGCCACCTGACTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30120798 88 + 173848474 CCAGTAGGTTTTTATAAAGGAACCCGGCTGTCACGTGCAGAGGAGAAATAAA-----CAGAA---AGATTCCCATCCTCAG----GGAGCCACCTGACTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5919738 88 +   6154872 CCAGTAGGTTTTTATAAAGGAACCCGGCTGTCATGTGCAGAGGAGAAATAAA-----CAGAA---AGATTCCCACCCTCAG----GGAGCCACCTGACTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634293 88 + 122973662 CCAGTAGGTTTTTATAAAGGAACCCAGCTGTCACGTGCAGAGGAGAAATAAC-----CAGAA---AGATTCCCATCCTCAG----GGAACCACCTGACTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118369 87 + 172585720 CCGGTAAGTTTTT-TAAAGGAACCCGGCTGTCACATGCAGAGGGGAAATCAA-----CAGAA---AGATTCCCATCCTCAG----GGAGCCACCTGACTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781448 87 - 170955103 CCGGTAAGTTTTT-TAAAGGAACCCGGCTGTCACATGCAGAGGGGAAATCAA-----CAGAA---AGATTCCCATCCTCAG----GGAGCCACCTGACTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2828977 87 -   2996164 CCGGTAAGTTTTT-TAAAGGAACCCGGCTGTCACATGCAGAGGGGAAATCAA-----CAGAA---AGATTCCCATCCTCAG----GGAGCCACCTGACTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578476 87 +    766320 CCGGTAAGTTTTT-TAAAGGAACCCGGCTGTCACATGCTGAGGGGAAATCAA-----CAGAA---AGATTCCCATCCTCAG----GGAGCCACCTGACTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29034982 87 -  71996105 CCGGTAAGTTTTT-TAAAGGAACCTGGCTGTCACATGCAGAGGGGAAATCAA-----CAGAA---AGATTCCCATCCTCAG----GGAGCCACCTGACTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226336 87 +    290775 CCGGTAAGTTTTT-TAAAGGAACCCAGCTGTCACATGCAGAGGGGAAATCAA-----CAGAA---AGATTCCCATCCTCAG----GGAGCCACCTGACTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2673996 87 -   3067355 CCGGTAAGTTTTT-TAAAGGAACCTGGCTGTCACATGCAGAGGGGAAATCAA-----CAGAA---AGATTCCCATCCTCAG----GGAGCCACCTGACTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48137 65 +    132061 ccAGTAAGTTTTCATAAAGGA-----------------------GAAATAAA-----CAGAA---ATATTCCCGTCCTCCA----GGAGCCACCTGACTG
i calJac3.chrUn_GL286223   I 310 C 0
s saiBol1.JH378388              194 65 -    110772 CTAGTGAGTTTTCATAAAGGA-----------------------GAAATAAA-----CAGAA---ATATTCCCGTCCTCCG----GGAGCCACCTGACTG
i saiBol1.JH378388         C 0 C 0
s aotNan1.NW_018509740v1     338731 65 -    457564 CTAGTAAGTTTTCATAAAGGA-----------------------GAAATAAA-----CAGAA---ATATTCCTGTCCTCCG----GGAGCCACCTGACGG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               172870 91 + 123392446 CCAATGAG-TTTTATAAAGGAGCCCTGCTCTTCTCCGCAGAGGAGAGATGAAAG----ACAACACAGACTCCTGACCTCAG----GGAGCCACCTGACTG
i micMur3.chr6             C 0 I 42
s proCoq1.NW_012152574v1     640235 95 +    730504 CCAATGAG-TTTTATAAAGGAGCCCTGCGCTCTTCCGCAGAGGAGAAATAAAAGAGACAGAACACAGACTCCTGACCTCAG----GGAGCCACCTGACTG
i proCoq1.NW_012152574v1   C 0 I 3
s otoGar3.GL873550           149760 96 +  18854210 Ccagtaagcttttataaaggagctctgctctcaagtgctggggagaaataaaagaaacagaagacagattcctgatctcag----agagctacctgactg
i otoGar3.GL873550         C 0 I 3
s mm10.chr17               57964734 68 -  94987271 -----GAG-----ATACAGGAGCCT-GTTGTCCAACTAAAAGAAGAAATAAA-------GAA---ACCGCCCTAGTC-CAG----GCATCCTCT------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26257108 89 +  26524999 CTGACAAGTTTTTGTAGAGGG-TCCTGCTGTCATGTGCTGGGGAGACACCGA----GCGGAAAACAGGTTTCCAAGCTCAG----GGAGCTGC--AGCCG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            78554 72 +    102524 --------------------AGCCCTGGTTTCACAAGCTGAGGGGAAGAGAA--GGACCCAA---AGATT---ATCTCCAGTGCAGGAGCCTCCCAAGAG
i dasNov3.JH582591         C 0 C 0
e cebCap1.NW_016107755v1     267515 836 -   1771730 I

a score=226631.000000
s hg38.chr6_GL000254v2_alt   923657 25 +   4827813 ACAGAGGCACAGT---------------GCATCCACTCTC
s panTro5.chr6             29886579 25 + 175400573 ACAGAGGCACAGT---------------GCATCCACTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30120886 25 + 173848474 ACAGAGGCACAGT---------------GCATCCACTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5919826 25 +   6154872 ACAGAGGCACAGT---------------GCATCCACTCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634381 25 + 122973662 ACAGAGGCCCAGT---------------GCATCCACTCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118456 25 + 172585720 AGAGAGGTACAGT---------------GCATCCACTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781535 25 - 170955103 AGAGAGGTACAGT---------------GCATCCACTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829064 25 -   2996164 AGAGAGGTACAGT---------------GCATCCACTCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578563 25 +    766320 ACAGAGGTACAGT---------------GCATCCACTCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035069 25 -  71996105 ACAGAGGTACAGT---------------GCATCCACTCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226423 25 +    290775 ACAGAGGTACAGT---------------GCATCCACTCTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674083 25 -   3067355 ACAGAGGCACAGT---------------GCATCCACTCTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48202 25 +    132061 ACAGAGGTCCCAT---------------GCATCCAGTCTC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              259 25 -    110772 ACAGAGGTCCCAT---------------GCATCCACTCTC
i saiBol1.JH378388         C 0 C 0
s aotNan1.NW_018509740v1     338796 25 -    457564 ACAGAGGTCCTGT---------------GCATCCACTCTC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     640333 24 +    730504 GAGGAGG-CCGGT---------------CCGTCCACTCCC
i proCoq1.NW_012152574v1   I 3 I 14
s otoGar3.GL873550           149859 25 +  18854210 gaagaggcCCAAT---------------CCACCCACTTCC
i otoGar3.GL873550         I 3 I 14
s mm10.chr17               57964802  9 -  94987271 ---GTGG---------------------GCATC-------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26257197 38 +  26524999 --GGAGGCCCAGCCCTGCTCGGTCTCAGACATCCTCGCCG
i canFam3.chr35            C 0 I 5
s dasNov3.JH582591            78626 22 +    102524 ---GAGCCCCCGT---------------CCCTTTGGTCCC
i dasNov3.JH582591         C 0 I 13
e micMur3.chr6               172961 42 + 123392446 I
e cebCap1.NW_016107755v1     267515 836 -   1771730 I

a score=987127.000000
s hg38.chr6_GL000254v2_alt   923682 77 +   4827813 CAGGTCTAGGGGAGAAAGCAGCCTTATTTCTTAGTAGCTCAGAATCTGACTTGAGAAACACAT-CCACATAGAAAAAA
s panTro5.chr6             29886604 77 + 175400573 CAGGTCTAGGGGAGAAAGCAGCCTTATTTCTTAGTAGCTCAGAATCTGACTTGAGAAACACAT-CCACATAGAAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30120911 77 + 173848474 CAGGTCTAGGGGAGAAAGCAGCCTTATTTCTTAGTAGCTCAGAATCTGACTTGAGAAACACAT-CCACATAGAAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5919851 77 +   6154872 CAGGTCTAGGGGAGAAAGCAGCCTTGTTTCTTAGTAGCTCAGAATCTGACTTGAGAAACACAT-CCACATAGAAAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634406 77 + 122973662 CAGGTCTAGGGGAGAAAGCAGCCTTGTTTCTTAGTAGCTCAGAGTCTGACTTAAGAAACACAT-CCACATAGAAAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118481 77 + 172585720 CAGGTCTAGGGGAGAAAGCAGCTTTATTTCCTAGTAGCTCAGAGTCTGACTCGAGAAACACAC-CCACATAGAAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781560 77 - 170955103 CAGGTCTAGGGGAGAAAGCAGCTTTATTTCCTAGTAGCTCAGAGTCTGACTCGAGAAACACAC-CCACATAGAAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829089 77 -   2996164 CAGGTCTAGGGGAGAAAGCAGCTTTATTTCCTAGTAGCTCAGAGTCTGACTCGAGAAACACAC-CCACATAGAAAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578588 77 +    766320 CAGGTCTAGGGGAGAAAGCAGCTTTATTTCCTAGTAGCTCAGAGTCTGATTCGAGAAACACAT-CCACATAGGAAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035094 77 -  71996105 CAGGTCTAGGGGAGAAAGCAGCTTTATTTCCTAGTAGCTCAGAGTCTGACTCGAGAAACACAT-CCACATAGAAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226448 77 +    290775 CAGGTCTAGGGGAGAAAGCAGCTTTATTTCCTAGTAGCTCAGAGTCTGACTCGAGAAACACAT-CCACATAGAAAAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674108 77 -   3067355 CAGGTATAGGGGAAAAAGCAGCTTTATCTCCTAGTAGCTCAGAGCCTGACTTGAGAAACACAT-CCACATAGAAAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48227 76 +    132061 CAGGTCTAGGGGAGAAAGCAGCCTTATTTCTTAGTAGCTTGGAGTCTGACCTGCAAAACATGT-CCACATAG-AAAAA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              284 76 -    110772 CAGGTCTAGGGGAGAAAGCAGCCTTATTTCTTAGTAGCTTGGAGTCTGACCTGAGAAACATGT-CCACATAG-AAAAA
i saiBol1.JH378388         C 0 C 0
s aotNan1.NW_018509740v1     338821 76 -    457564 CAGGTCTAGGGGAGAAAGCAGCCTTATTTCTTAGTAGCTTGGAGTCTGACCTGAGAAACATGT-CCACATAC-AAAAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               173003 77 + 123392446 CAGGTCTAAGGGAGAAACCAGCCTTATCTCCTAGTAGCTCAGGGTCTGACTTGAAAAACATTT-CCGCATAGGAAAAA
i micMur3.chr6             I 42 I 85
s proCoq1.NW_012152574v1     640371 77 +    730504 CAGGTCTAAGGGAGAAACCAGCCTTATCTCCTAGTAGCTCAGAGTCTGGCTTGAAAAACACGT-CCACGTAGGAAAAA
i proCoq1.NW_012152574v1   I 14 I 1
s otoGar3.GL873550           149898 75 +  18854210 CAGGTCTAAGGGAGAAAGCAGCCGTATCTCCCCATAGCTCAGCATCTGGCTTGAAAAAC--GT-CCACATAGGAAAAG
i otoGar3.GL873550         I 14 C 0
s mm10.chr17               57964811 51 -  94987271 CTGGTATAAGGAAG-----AGCCCAGTTTGCTAGTAGCT--GATTCTCACTGGGGAGA--------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26257240 77 +  26524999 CAGATGTCGTGGAGCAACCAGTCTTACCTTTCCGCAGCTCTGAGTCTGGCT-GACAGACATTCACCACATAGGAAAAG
i canFam3.chr35            I 5 C 0
s dasNov3.JH582591            78661 77 +    102524 CCAGTCCAATGGGAAAACCAGCCTCATCTCCATTTTGGTCAGTGCCTGAGGGAGGGGACATCC-CACCACGGAGCAAG
i dasNov3.JH582591         I 13 C 0
e cebCap1.NW_016107755v1     267515 836 -   1771730 I

a score=814400.000000
s hg38.chr6_GL000254v2_alt   923759 84 +   4827813 ACAAGGAACTTTTTCGGGTCAGGGTCCGGGAGCCACAGTGAGGT-GGAAGAT-------ACAGGGGAAGGA--AGAGGGAAATAGAGCCATCCC
s panTro5.chr6             29886681 84 + 175400573 ACAAGGAACTTTTTCAGGTCAGGGTCCGGGAGCCACAGTGAGGT-GGAAGAT-------ACAGGGGAAGGA--AGAGTGAAATAGAGCCATCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30120988 84 + 173848474 ACAAGGAACTTTTTCAGGTCAGGGTCCGGGAGCCACAGTGAGGT-GGAAGAT-------ACAGGGGAAGGA--AGAGTGAAATAGAGCCATCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5919928 84 +   6154872 ACAAGGAACTTTTTCGGGTCAGGGTCTGGGAGCCACAGTGAGGT-GGAAGAT-------ACAAGGGAAGGA--AGAGTGAAATAGAGCCATCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634483 84 + 122973662 ACACGGAACTTGTTCGGGTCAGGGTCCAGGAGCCACAGTGAGGT-GGAAGAT-------ACAGGGGAAGGA--AGAGTGAAATAGAGCCATCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118558 84 + 172585720 ACATGGAACTTGTTTGGGTCAGGGTCGAGGAGCCACAGTGAGGT-GGAAGAT-------ACAGAAGAAGGA--AGAGTGAAATAGAGCCATCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781637 84 - 170955103 ACATGGAACTTGTTTGGGTCAGGGTCGAGGAGCCACAGTGAGGT-GGAAGAT-------ACAGAAGAAGGA--AGAGTGAAATAGAGCCATCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829166 84 -   2996164 ACATGGAACTTGTTTGGGTCAGGGTCGAGGAGCCACAGTGAGGT-GGAAGAT-------ACAGAAGAAGGA--AGAGTGAAATAGAGCCATCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578665 84 +    766320 ACATGGAACTTGTTTGGGTCAGGGTCGAGGAGCCACAGTGAGGT-GGAAGAT-------ACAGAAGAAGGA--AGAGTGAAATAGAGCCATCCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035171 84 -  71996105 ACATGGAACTTGTTCGGGTCAGGGTCGAGGAGCCACAGTGAGGT-GGAAGAT-------ACAGAAGAAGGA--AGAGTGAAATAGAGCCATCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226525 84 +    290775 ACATGCAACTTGTTTGGGTCAGGGTCGAGGAGCCACAGTGAGGT-GGAAGAT-------ACAGAAGAAGGA--AGAGTGAAATAGAGCCATCCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674185 84 -   3067355 ACATGGAACTTGTTCGGGTCAGGGTCAAGGAGCCACAGTGAGGT-GGAAGAT-------ACAGAAGAAGGA--AGAGTGAAATAGAGCCATCCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48303 84 +    132061 ACATGAAACTTGTTTGGGACAGGGTCCAGGAGCTGCAGTGAGAT-GGAAGAT-------ACAGGGGAAGGA--AGAGTGAAACAGAGCCATCCC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              360 84 -    110772 ACATGAAACTTGTTTGGGACAGGATCCAGGAGCTGCAGTGAGAT-GGGAGAT-------ACAGGGGAAGGA--AGAGTGAAATAGAGCCATCCC
i saiBol1.JH378388         C 0 C 0
s aotNan1.NW_018509740v1     338897 84 -    457564 ACATGAAACTTGTTTGGGACAGTGTCCAGGAGCTGCAGTGAGAT-GGAAGAT-------ACAGGGGAAGGA--AGAGTGAAATAGAGCCATCCC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     640449 86 +    730504 ACCGGGAACGTGTTCAGAGCAGGGCCCAGAAGCTGCAGTGAGGT-TGCAGGT-------ACAGAGGGAAAAGCAGAGTGAGATAGAGCTACCTT
i proCoq1.NW_012152574v1   I 1 C 0
s otoGar3.GL873550           149973 81 +  18854210 ACTGAGAATACATTTGGAGCAAGATCCAGGAGCTGCAGTGAGGT-TGAAGAGGAGTGAAATAGAGGGAA----AGAGTGCAGTTGA--------
i otoGar3.GL873550         C 0 I 7
s mm10.chr17               57964862 50 -  94987271 ----------TGTCCAGAGAAGTTTCCAG-AGCTAGCATAAGGC-TGAAGAT-------ACAAATGAAA-------------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26257317 45 +  26524999 ------------TTTGGGCT--------------------------GAAAGC-------ACAGAGGAAA----AGAAGGAAGGAGAGTCAGCTC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            78738 75 +    102524 ATTGGGGACACGCCCAGAGCAGG-TCCAGGACCATGAGTGAGCTCTGAAGGT-------CCAGAGGAAAAG-------GAAACA----CATTCC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173080 85 + 123392446 I
e cebCap1.NW_016107755v1     267515 836 -   1771730 I

a score=384912.000000
s hg38.chr6_GL000254v2_alt   923843 30 +   4827813 CAGGGTGGAAGATCTCAGAAGAGAATTTGG
s panTro5.chr6             29886765 30 + 175400573 CAGGGTGGAAGATCTCAGAAGAGAATTTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121072 30 + 173848474 CAGGGTGGAAGATCTCAGAAGAGAATTTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920012 30 +   6154872 CAGGGTGGAAGAGCTCAGAAGAGAATTTGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634567 30 + 122973662 CAGGGTGGAAGATCTCAGAGGAGAATTTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118642 30 + 172585720 CAGGGTGGAAGATCTCAGAGGAGAATTTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781721 30 - 170955103 CAGGGTGGAAGATCTCAGAGGAGAATTTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829250 30 -   2996164 CAGGGTGGAAGATCTCAGAGGAGAATTTGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578749 30 +    766320 CAGGGTGGAAGATCTCAGACGAGAATTTGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035255 30 -  71996105 CAGGGTGGAAGATCTCAGAGGAGAATTTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226609 30 +    290775 CAGGGTGGAAGATCTCAGAGGAGAATTTGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674269 30 -   3067355 CAGGGTGGAAGATCTCAGAGGAGAATTTGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48387 30 +    132061 CAGTGTGCGAGATCTCAAAGGACAATCTGG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              444 30 -    110772 CAGTGTGGGAGATCTCAGAGGAGAATTTGG
i saiBol1.JH378388         C 0 C 0
s aotNan1.NW_018509740v1     338981 26 -    457564 --GTGTGGGAGATCT--GAGGAGAATTTGG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               173165 30 + 123392446 CAGGGTGCAAGATCTCAGAGGAGAATTTGG
i micMur3.chr6             I 85 I 155
s proCoq1.NW_012152574v1     640535 30 +    730504 CAGGGTGGAAGATCTCGGAGGAGAATTTGG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           150061 26 +  18854210 AAGAGTGCAA----TCAGAGGAGAATTTGA
i otoGar3.GL873550         I 7 C 0
s mm10.chr17               57964912 14 -  94987271 ----------------AGAAGAGAATTAAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26257362 17 +  26524999 CAGGGTGGAACATTTTG-------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            78813 30 +    102524 CAGGGTGGAAGCTCTCAAAAGAGAATCCAG
i dasNov3.JH582591         C 0 C 0
e cebCap1.NW_016107755v1     267515 836 -   1771730 I

a score=25122.000000
s hg38.chr6_GL000254v2_alt   923873 7 +   4827813 -GAAACAA
s panTro5.chr6             29886795 7 + 175400573 -GAAACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121102 7 + 173848474 -GAAACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920042 7 +   6154872 -GAAACAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634597 7 + 122973662 -GAAACAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118672 7 + 172585720 -GAAACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781751 7 - 170955103 -GAAACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829280 7 -   2996164 -GAAACAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578779 7 +    766320 -GAAACAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035285 7 -  71996105 -GAAACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226639 7 +    290775 -GAAACAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674299 7 -   3067355 -GAAACAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48417 5 +    132061 -GAAAT--
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              474 5 -    110772 -GAAAT--
i saiBol1.JH378388         C 0 C 0
s aotNan1.NW_018509740v1     339007 5 -    457564 -GAAAT--
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     640565 7 +    730504 -GGAACAA
i proCoq1.NW_012152574v1   C 0 I 84
s otoGar3.GL873550           150087 2 +  18854210 -GG-----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57964926 6 -  94987271 --ACATAg
i mm10.chr17               C 0 I 1
s canFam3.chr35            26257379 7 +  26524999 -GGAATAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            78843 7 +    102524 GGAAGGA-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173195 155 + 123392446 I
e cebCap1.NW_016107755v1     267515 836 -   1771730 I

a score=300901.000000
s hg38.chr6_GL000254v2_alt   923880 34 +   4827813 GGTATGAACAAGGACTGAATAGTGAGAAGTGATG
s panTro5.chr6             29886802 34 + 175400573 GGTATGAACAAGGACTGAATAGTGAGAAGTAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121109 34 + 173848474 GGTATGAACAAGGACTGAATAGTGAGAAGTAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920049 34 +   6154872 GGTATGAACAAGGACTGAATAGTGAGAAGTGATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634604 34 + 122973662 GGTATGAACAAGGACTGAATAGTGAGAAGTGACG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118679 34 + 172585720 GGTATGAACAAGGATTGAATAGTGAGAAGTGGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781758 34 - 170955103 GGTATGAACAAGGATTGAATAGTGAGAAGTGGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829287 34 -   2996164 GGTATGAACAAGGATTGAATAGTGAGAAGTGGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578786 34 +    766320 GGTATGAACAAGGACTGAATAGTGAGAAGTGGTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035292 34 -  71996105 GGTATGAACAAGGACTGAATAGTGAGAAGTGGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226646 34 +    290775 GGTATGAACAAGGACTGAATAGTGAGAAGTGGTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674306 34 -   3067355 GGTATGAACAAGGACTGAATAGTGAGAAGTGGTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48422 33 +    132061 GGTATGAACAAGGACTGAATGATTAGAAGTAGT-
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              479 33 -    110772 GGTATGAACAAGGACTGAATGATTAGAAGTGGT-
i saiBol1.JH378388         C 0 C 0
s aotNan1.NW_018509740v1     339012 33 -    457564 GGTATGAACAAGGACTGAATGATTAGAAGTGGT-
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           150089 26 +  18854210 -----GAAAAAGGACAGA---GGGAGAAGTGATA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57964933 34 -  94987271 ggttagagagatggctttgtggtaaagagtatta
i mm10.chr17               I 1 I 75
s canFam3.chr35            26257386 32 +  26524999 GTTTTGAGTGAGGACTAAGGGCTGAGAGGCCA--
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            78850 19 +    102524 --------GGAGGGCTGAGAGGTGGGG-------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173195 155 + 123392446 I
e proCoq1.NW_012152574v1     640572 84 +    730504 I
e cebCap1.NW_016107755v1     267515 836 -   1771730 I

a score=219801.000000
s hg38.chr6_GL000254v2_alt   923914 25 +   4827813 GAGAGAC-AGCTAAAGTAGATGGAGT
s panTro5.chr6             29886836 25 + 175400573 GAGAGAC-AGTTAAAGTAGATGGAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121143 25 + 173848474 GAGAGAC-AGTTAAAGTAGATGGAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920083 25 +   6154872 GAGAGAC-AGTTAAAGTAGATGGAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634638 25 + 122973662 GAGAGAC-AGTTAAAGTGGATGGAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118713 25 + 172585720 GAGAGAC-AGTTAAAGTGGATGGAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781792 25 - 170955103 GAGAGAC-AGTTAAAGTGGATGGAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829321 25 -   2996164 GAGAGAC-AGTTAAAGTGGATGGAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578820 25 +    766320 GAGAGAC-AGTTAAAGTGGATGGAGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035326 25 -  71996105 GAGAGAC-AGTTAAAGTGGATGGAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226680 25 +    290775 GAGAGAC-AGTTAAAGTGGATGGAGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674340 25 -   3067355 GAGAGAC-AATTAAAGTGGATGGAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48455 26 +    132061 GAGAGACAATTAAAAGCAGATGGAGT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              512 22 -    110772 GAGAGAC----AAAAGTGCATGGAGT
i saiBol1.JH378388         C 0 C 0
s aotNan1.NW_018509740v1     339045 24 -    457564 GAGAGAA--TTAAAAGTGGATGGAGT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           150115 22 +  18854210 GAGAGAG-TTTTACATT---TTAAGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26257418 22 +  26524999 ---GGAC-AGGTGGTGGTGGAGGAGC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            78869 25 +    102524 GAGAGGC-AGTTAGAGTGGACAGAGC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173195 155 + 123392446 I
e mm10.chr17               57964967 75 -  94987271 I
e proCoq1.NW_012152574v1     640572 84 +    730504 I
e cebCap1.NW_016107755v1     267515 836 -   1771730 I

a score=124340.000000
s hg38.chr6_GL000254v2_alt   923939 12 +   4827813 GACAAAAGCAAA
s panTro5.chr6             29886861 12 + 175400573 GACAAAAGCAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121168 12 + 173848474 GACAAAAGCAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920108 12 +   6154872 GACAAAAGCAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634663 12 + 122973662 GACAAAAGCAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118738 12 + 172585720 GACAAAAGCAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781817 12 - 170955103 GACAAAAGCAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829346 12 -   2996164 GACAAAAGCAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578845 12 +    766320 GACAAAAGCGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035351 12 -  71996105 GACAAAAGCGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226705 12 +    290775 GACAAAAGCGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674365 12 -   3067355 GACAAAAGTAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48481 12 +    132061 GACAAAAGCAAA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              534 11 -    110772 GAC-AAAGCAAA
i saiBol1.JH378388         C 0 C 0
s aotNan1.NW_018509740v1     339069 12 -    457564 GACAAAAGCAAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           150137 12 +  18854210 GACAACAGCAAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26257440 12 +  26524999 GGCCCAAGCAGA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               173195 155 + 123392446 I
e mm10.chr17               57964967 75 -  94987271 I
e dasNov3.JH582591            78894  0 +    102524 C
e proCoq1.NW_012152574v1     640572 84 +    730504 I
e cebCap1.NW_016107755v1     267515 836 -   1771730 I

a score=322173.000000
s hg38.chr6_GL000254v2_alt   923951 27 +   4827813 ACCTCTAAGGGTAGAATAGGCAGCAAT
s panTro5.chr6             29886873 27 + 175400573 ACCTCTAAGGGTAGAATAGGCAGCAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121180 27 + 173848474 ACCTCTAAGGGTAGAATAGGCAGCAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920120 27 +   6154872 ACCTCTAAGGGTAGAATAGGCAGCAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634675 27 + 122973662 ACCTCTGAGGGTAGAATAGGCAGCAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118750 27 + 172585720 ACCTCTAAGGGTAGAATAAGCAGCAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781829 27 - 170955103 ACCTCTAAGGGTAGAATAAGCAGCAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829358 27 -   2996164 ACCTCTAAGGGTAGAATAAGCAGCAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578857 27 +    766320 ACCTCTAAGGGTAGAATAGGCAGTAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035363 27 -  71996105 ACCTCTAAGGGTAGAATAGGCAGCAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226717 27 +    290775 ACCTCTAAGGGTAGAATAGGCAGCAAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674377 27 -   3067355 ACCTCTAAGGGTAGAATAGGCAGCAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48493 27 +    132061 ACCTCTAAGGGTAGAATAGGCAGCAAT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              545 27 -    110772 ACCTCTAAGGGTAGAACAGGCAGCAAT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1    1503833 27 +   1771730 acctcTAAGGGTAGAATAGGCAGCAAT
i cebCap1.NW_016107755v1   n 836 C 0
s aotNan1.NW_018509740v1     339081 27 -    457564 ACCTCTAAGGGTAGAATGGGCAGCAAT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           150149 27 +  18854210 ATCTCTAAGGGGAGAATAGAAATGAAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26257452 26 +  26524999 GCCACCAGGGG-AAAGTGGGGAGCAGC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               173195 155 + 123392446 I
e mm10.chr17               57964967 75 -  94987271 I
e dasNov3.JH582591            78894  0 +    102524 C
e proCoq1.NW_012152574v1     640572 84 +    730504 I

a score=219665.000000
s hg38.chr6_GL000254v2_alt   923978 17 +   4827813 TTGGCCAAGTCCTAACA
s panTro5.chr6             29886900 17 + 175400573 TTGGCCAAGTCCTAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121207 17 + 173848474 TTGGCCAAGTCCTAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920147 17 +   6154872 TTGGCCAAGTCCTAACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634702 17 + 122973662 TTGGCCAAGTCCTAACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118777 17 + 172585720 TTGGCCAAGTCCTAACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781856 17 - 170955103 TTGGCCAAGTCCTAACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829385 17 -   2996164 TTGGCCAAGTCCTAACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578884 17 +    766320 TTGGCCAAGTCCTAACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035390 17 -  71996105 TTGGCCAAGTCCTAACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226744 17 +    290775 TTGGCCAAGTCCTAACA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674404 17 -   3067355 TTGGCCAAGTCCTAACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48520 17 +    132061 TTGGTCAAGTCATAACC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              572 17 -    110772 CTGGTCAAGTCATAACC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1    1503860 17 +   1771730 TTGGTCAAGTCATAACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339108 17 -    457564 TTGGTCAAGTCATAACC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     640656 17 +    730504 TTGGCCAAGTCCAAACA
i proCoq1.NW_012152574v1   I 84 C 0
s otoGar3.GL873550           150176 17 +  18854210 TTGGCAAAGTTTAAACA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26257478 17 +  26524999 TTGGTTAAGTCCAAACA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               173195 155 + 123392446 I
e mm10.chr17               57964967 75 -  94987271 I
e dasNov3.JH582591            78894  0 +    102524 C

a score=142899.000000
s hg38.chr6_GL000254v2_alt   923995 10 +   4827813 GGGAGGCCCA
s panTro5.chr6             29886917 10 + 175400573 GGGAGGCCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121224 10 + 173848474 GGGAGGCCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920164 10 +   6154872 GGGAGGCCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634719 10 + 122973662 GGGAGGCCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118794 10 + 172585720 GGGAGGCCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781873 10 - 170955103 GGGAGGCCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829402 10 -   2996164 GGGAGGCCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578901 10 +    766320 GGGAGGCCCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035407 10 -  71996105 GGGAGGCCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226761 10 +    290775 GGGAGGCCCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674421 10 -   3067355 GGGAGGCCCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48537 10 +    132061 GGGACACCCA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              589 10 -    110772 CGGACGCCCA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1    1503877 10 +   1771730 GGGATGCCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339125 10 -    457564 GGGACGCCCA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     640673 10 +    730504 GGGAGGCCCA
i proCoq1.NW_012152574v1   C 0 I 19
s otoGar3.GL873550           150193 10 +  18854210 GGGAGGCCCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57965042 10 -  94987271 GGGAAGCACT
i mm10.chr17               I 75 C 0
s canFam3.chr35            26257495  9 +  26524999 -TGGGGCCCC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               173195 155 + 123392446 I
e dasNov3.JH582591            78894  0 +    102524 C

a score=279463.000000
s hg38.chr6_GL000254v2_alt   924005 33 +   4827813 ---TAGGAGGATTCAACCTCAAGATGCTGTGCCACA
s panTro5.chr6             29886927 33 + 175400573 ---TGGGAGGATTCAACCTCAAGATGCTGCGCCACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121234 33 + 173848474 ---TGGGAGGATTCAACCTCAAGATGCTGCGCCACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920174 33 +   6154872 ---TGGGAGGATTCAACCTCAAGATGCTGCGCCACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634729 33 + 122973662 ---TGGGAGGATTCAACCTCAAGATGCTGCACCACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118804 33 + 172585720 ---TGGGAAGATTCAACCTCAAGATGCTGCACCACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781883 33 - 170955103 ---TGGGAAGATTCAACCTCAAGATGCTGCACCACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829412 33 -   2996164 ---TGGGAAGATTCAACCTCAAGATGCTGCACCACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578911 33 +    766320 ---TGGGAAGATTCAACCTCAAGATGCTGCACCACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035417 33 -  71996105 ---TGGGAAGATTCAACCTCAAGATGCTGCACCACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     226771 33 +    290775 ---TGGGAAGATTCAACCTCAAGATGCTGCACCACA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674431 33 -   3067355 ---TGGGAAGATTCAACCTCAAGATGCTGCACCACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48547 28 +    132061 ---TGGGATAATTAAACCTT-----GTTGAACCACA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              599 28 -    110772 ---TGGGACAATTAAACCTT-----GTCGAACCACA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1    1503887 28 +   1771730 ---TGGGATAATTAAACCTC-----GGTGAACCACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339135 28 -    457564 ---TGGGATAATTAAACCTC-----GTTGAACCACA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           150203 33 +  18854210 ---TGGGAGAATTAAACTTCAGGATGCTGTACCACT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57965052 18 -  94987271 ------------------TAGAAGTAGTGGGCCACA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26257504 36 +  26524999 CATCCCAAGAATAGAACTGCGAGATGCCAGAGCATG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               173195 155 + 123392446 I
e dasNov3.JH582591            78894  0 +    102524 C
e proCoq1.NW_012152574v1     640683 19 +    730504 I

a score=164747.000000
s hg38.chr6_GL000254v2_alt   924038 12 +   4827813 TTCCAAGAGGGA
s panTro5.chr6             29886960 12 + 175400573 TTCCAAGAGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121267 12 + 173848474 TTCCAAGAGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920207 12 +   6154872 TTCCAAGAGGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634762 12 + 122973662 TTCCAAGAGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118837 12 + 172585720 TTCCAAGAGGGA
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29781916 12 - 170955103 TTCCAAGAGGGA
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2829445 12 -   2996164 TTCCAAGAGGGA
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012002711v1     578944 12 +    766320 TTCCAAGAGGGA
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17            29035450 12 -  71996105 TTCCAAGAGGGA
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012099233v1     226804 12 +    290775 TTCCAAGAGGGA
i manLeu1.NW_012099233v1   C 0 T 7194
s colAng1.NW_012115566v1    2674464 12 -   3067355 TTCCAAGAGGGA
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chrUn_GL286223      48575 12 +    132061 TTCCAAGAGGGA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              627 12 -    110772 TTCCAAGAGGAA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1    1503915 12 +   1771730 TTCCAAGAGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339163 12 -    457564 TTCCAAGAGGGA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     640702 12 +    730504 TTCCAAGGTGGA
i proCoq1.NW_012152574v1   I 19 C 0
s otoGar3.GL873550           150236 12 +  18854210 GTCCAAGGTGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57965070 12 -  94987271 TGACAAGGAGGC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26257540 12 +  26524999 CCCCGTAATGGG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               173195 155 + 123392446 I
e dasNov3.JH582591            78894  0 +    102524 C

a score=9786.000000
s hg38.chr6_GL000254v2_alt   924050 1 +   4827813 A
s panTro5.chr6             29886972 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121279 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920219 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634774 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118850 1 + 172585720 A
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29781929 1 - 170955103 A
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2829458 1 -   2996164 A
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1     578957 1 +    766320 A
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17            29035463 1 -  71996105 A
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012099233v1     219622 1 +    290775 A
i manLeu1.NW_012099233v1   T 7194 C 0
s colAng1.NW_012115566v1    2674477 1 -   3067355 A
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chrUn_GL286223      48587 1 +    132061 A
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              639 1 -    110772 A
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1    1503927 1 +   1771730 A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339175 1 -    457564 C
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     640714 1 +    730504 G
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           150248 1 +  18854210 A
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26257552 1 +  26524999 A
i canFam3.chr35            C 0 C 0
e micMur3.chr6               173195 155 + 123392446 I
e mm10.chr17               57965082 0 -  94987271 C
e dasNov3.JH582591            78894 0 +    102524 C

a score=202100.000000
s hg38.chr6_GL000254v2_alt   924051 15 +   4827813 CCTAAAGG--CTGGGCT
s panTro5.chr6             29886973 15 + 175400573 CCTAAAGG--CTGGGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121280 15 + 173848474 CCTAAAGG--CTGGGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920220 15 +   6154872 CCTAAAGG--CTGGGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634775 15 + 122973662 CCTAAAGG--CTGGGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118851 15 + 172585720 CTTAAAGC--CTGGACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781930 15 - 170955103 CTTAAAGC--CTGGACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829459 15 -   2996164 CTTAAAGC--CTGGACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578958 15 +    766320 CTTAAAGC--CTGGACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035464 15 -  71996105 CTTAAAGC--CTGGACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     219623 15 +    290775 CTTAAAGC--CTGGACT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674478 15 -   3067355 CTTAAAGC--CTAGACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48588 15 +    132061 CCTAAAGG--CTGGACT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              640 15 -    110772 CCTAAAGG--CTGGACT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1    1503928 15 +   1771730 CCTAAAGG--TTGGACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339176 15 -    457564 CCTAAAGG--CTGGACC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     640715 15 +    730504 CCTGAAGG--CTGGACT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           150249 15 +  18854210 CCTAAAAG--CTGGGCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57965082 13 -  94987271 ----AAGCATCTGAGCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26257553 15 +  26524999 CCTAAACG--CTGGACT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            78894 15 +    102524 CCCAAAAG--CAAAACT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173195 155 + 123392446 I

a score=535387.000000
s hg38.chr6_GL000254v2_alt   924066 41 +   4827813 GAAGAGTCAGAGATGGCTACAGCTGGC-AAAAAGATGGGCAG
s panTro5.chr6             29886988 41 + 175400573 GAAGAGTCAGAGATGGCTACAGCTGGC-AAAAAGATGGGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121295 41 + 173848474 GAAGAGTCAGAGATGGCTACAGCTGGC-AAAAAGATGGGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920235 41 +   6154872 GAAGAGTCAGAGATGGCTACAGCTGGC-AAAAAGATGGGCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634790 41 + 122973662 GAAGAGTCAGAGATGGCTGCAGCTGGC-AAAAAGATGGGCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118866 41 + 172585720 GAAGAGTCAGAGATGGCTACAGTTGGC-AAAAAGATGGGCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781945 41 - 170955103 GAAGAGTCAGAGATGGCTACAGTTGGC-AAAAAGATGGGCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829474 41 -   2996164 GAAGAGTCAGAGATGGCTACAGTTGGC-AAAAAGATGGGCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     578973 41 +    766320 GAAGAGTCAGAGATGGCTACAGTTGGC-AAAAAGATGGGCAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035479 41 -  71996105 GAAGAGTCAGAGATGGCTACAGTTGGC-AAAAAGATGGGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     219638 41 +    290775 GAACAGTCAGAGATGGCTATAGTTGGC-AAAAAGATGGGCAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674493 41 -   3067355 GAAGAGTCAGAGATGGCTACAGTTGGC-AAAAAGATGGGCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48603 31 +    132061 AAAGAGTTAG----------AGTTGGC-AAAAAGATGGGCAG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              655 32 -    110772 AAAGAGTCAG----------ATTTGGCAAAAAAGATGGGCAG
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1    1503943 31 +   1771730 AAAGACTCAG----------AGTTGGC-AAAAAGTTGGACAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339191 31 -    457564 AAAGAGTCAG----------AGTTGGC-AAAAAGATGGGCAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               173350 41 + 123392446 GAAGAGTCAGAGATGGATACAGTTGGC-AAAAAGGTGGGCAG
i micMur3.chr6             I 155 I 126
s proCoq1.NW_012152574v1     640730 42 +    730504 GAAGATTCAGAGATGGATACAGTTGGCAAAAAAGATGGGCAG
i proCoq1.NW_012152574v1   C 0 I 3
s otoGar3.GL873550           150264 42 +  18854210 GAAGAGTCAGAAATGGATACAGTCAACAAAAAAGGTGGGCAG
i otoGar3.GL873550         C 0 I 3
s mm10.chr17               57965095 37 -  94987271 GAGGAGTCAGAGATGAACATAGCTGGT-AGAAAAGTGG----
i mm10.chr17               C 0 C 0
s canFam3.chr35            26257568 41 +  26524999 GAGGAGTCAGAGAGGCGACCAGCTGGC-AGGAAGGTGAGCAC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            78909 31 +    102524 GCATAG-CAGAGAAG---------GGC-AACAATCTGGTCAA
i dasNov3.JH582591         C 0 C 0

a score=488909.000000
s hg38.chr6_GL000254v2_alt   924107  49 +   4827813 ATGCTGAGAGGAGATGATTGC----TAA-----------------------------------------------------------AATG----TTCTGTC---------------CAGGACA------TTCACAG
s panTro5.chr6             29887029  49 + 175400573 ATGCTGAGAGGAGATGATTGC----TAA-----------------------------------------------------------AATG----TTCTGTC---------------CAGGACA------TTCACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121336  49 + 173848474 ATGCTGAGAGGAGATGATTGC----TAA-----------------------------------------------------------AATG----TTCTGTC---------------CAGGACA------TTCACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920276  49 +   6154872 ATGCTGAGAGGAGATGATTGC----TAG-----------------------------------------------------------AATG----TTCTGTC---------------CAGGACA------TTCACAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634831  49 + 122973662 ATGCTGAGAGGAGATGATTGC----TAG-----------------------------------------------------------AATG----TTCTGTC---------------CAGGACA------TTCACAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118907  49 + 172585720 ATGCTGAGATGAGATGATTGC----TAG-----------------------------------------------------------AATG----TTCTGTC---------------CAGGATA------TTCACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29781986  49 - 170955103 ATGCTGAGATGAGATGATTGC----TAG-----------------------------------------------------------AATG----TTCTGTC---------------CAGGATA------TTCACAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829515  49 -   2996164 ATGCTGAGATGAGATGATTGC----TAG-----------------------------------------------------------AATG----TTCTGTC---------------CAGGATA------TTCACAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     579014  49 +    766320 ATGCTGAGATGAGATGATTGC----TAG-----------------------------------------------------------AATG----TTCTGTC---------------CAGGATA------TTCACAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035520  49 -  71996105 ATGCTGAGATGAGATGATTGC----TAG-----------------------------------------------------------AATG----TTCTGTC---------------CAGGATA------TTCACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     219679  49 +    290775 ATGCTGAGATGAGATGATTGC----TAG-----------------------------------------------------------AATG----TTCTGTC---------------CAGGATA------TTCACAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674534  49 -   3067355 ATGCTGAGATGAGATGATTGC----TAG-----------------------------------------------------------AATG----TTCTGTC---------------CAGGATA------TTCATGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48634  49 +    132061 ATGCTGAGATGAGATGATTGC----TAG-----------------------------------------------------------AATG----TTCTGTC---------------CAGTATA------CTCACAG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              687  49 -    110772 ATGCCGAGATGAGAGGATTGC----TAG-----------------------------------------------------------AATG----TTCTGTC---------------CAGGACA------CTCACAG
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1    1503974  49 +   1771730 ATGCCGAGATGAGAGGTTTGC----TAG-----------------------------------------------------------AATG----TTCTGTC---------------CAGGACA------TTCACAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339222  49 -    457564 ATGCCGAGATGAGATGATTGC----TAG-----------------------------------------------------------AATG----TTCTGTC---------------CAGGACA------TTTACAG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     640775  49 +    730504 CTGTTGGGATGAGATGATTGC----TAG-----------------------------------------------------------AACA----TTCTGTT---------------CAAGACA------CTCACAG
i proCoq1.NW_012152574v1   I 3 I 41
s otoGar3.GL873550           150309 129 +  18854210 CTGTTGTGATGAGACGATTGC----TAGCTTTTTTGAGTTTTTATTTATTTATTTCGTTTGtttgttttgttttgttttgagacagtctca----ctctgttttctgggcagaatgccatggcatcctacttcacag
i otoGar3.GL873550         I 3 I 26
s mm10.chr17               57965132  53 -  94987271 AAGCCATTGTCAGATGATTTCATGGTGG-----------------------------------------------------------AGCA----TTCTGTC---------------CTAGACA------TTCAGAA
i mm10.chr17               C 0 I 2
s canFam3.chr35            26257609  36 +  26524999 -----------------CTGC----TGG-----------------------------------------------------------AATGGCGCTTCGTTC---------------TGGGGCA------CTTGCGC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            78940  11 +    102524 --------------------------------------------------------------------------------------------------GTCC---------------CAAAAGA-------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173391 126 + 123392446 I

a score=215100.000000
s hg38.chr6_GL000254v2_alt   924156 22 +   4827813 TATCT---------------CTATAACCAGAGTCTT----------------------T
s panTro5.chr6             29887078 22 + 175400573 TATCT---------------CTATAACCAGAGTCTT----------------------T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121385 22 + 173848474 TATCT---------------CTATAACCAGAGTCTT----------------------T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920325 22 +   6154872 TATCT---------------CTATAACCAGAGTCTT----------------------T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634880 22 + 122973662 TATCT---------------CTATAACCAGAGTCTt----------------------t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118956 22 + 172585720 TATCT---------------CTATAACCAGAGACTT----------------------T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29782035 22 - 170955103 TATCT---------------CTATAACCAGAGACTT----------------------T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829564 22 -   2996164 TATCT---------------CTATAACCAGAGACTT----------------------T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     579063 22 +    766320 TATCT---------------CTATAACCACAGACTT----------------------T
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035569 22 -  71996105 TATCT---------------CTATAACCAGAGACTT----------------------T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     219728 22 +    290775 TATCT---------------CTATAACCAGAGACTT----------------------T
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674583 22 -   3067355 TATCT---------------CTATAACCAGAGACTT----------------------T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48683 22 +    132061 TATCT---------------CTATAACCAGTGACTT----------------------T
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              736 22 -    110772 CATCT---------------CTATAACCAGAGACTT----------------------T
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1    1504023 22 +   1771730 TATCT---------------CTATAACCAGAAACTT----------------------T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339271 22 -    457564 TATTT---------------CTATAACCAGAGACTT----------------------T
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           150464 59 +  18854210 catctcagcctcccagagtgctaggattaaagatgtgagccactttgcccagcCTTGCT
i otoGar3.GL873550         I 26 C 0
s mm10.chr17               57965187 14 -  94987271 TATCT---------------TTTT--------TTTT----------------------T
i mm10.chr17               I 2 C 0
s canFam3.chr35            26257645 22 +  26524999 CACCA---------------CCATAACGAGGATCTT----------------------T
i canFam3.chr35            C 0 I 1
e micMur3.chr6               173391 126 + 123392446 I
e dasNov3.JH582591            78951  0 +    102524 C
e proCoq1.NW_012152574v1     640824 41 +    730504 I

a score=166838.000000
s hg38.chr6_GL000254v2_alt   924178 29 +   4827813 T---TTGTCGTTGT-TG---TT-CTCAAGAAGGAAAC
s panTro5.chr6             29887100 29 + 175400573 T---TTGTCGTTGT-TG---TT-CTCAAGAAGGAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121407 29 + 173848474 T---TTGTCGTTGT-TG---TT-CTCAAGAAGGAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920347 29 +   6154872 T---TTGTCGTTGT-TG---TT-CTCAAGAAGGAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634902 32 + 122973662 tttgttgttgttgt-tg---tt-CTCAAGAAGGAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30118978 29 + 172585720 T---TTGTTGTTGT-TG---TT-CTCAAGAAGGAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29782057 29 - 170955103 T---TTGTTGTTGT-TG---TT-CTCAAGAAGGAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829586 29 -   2996164 T---TTGTTGTTGT-TG---TT-CTCAAGAAGGAAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     579085 32 +    766320 T---TTGTTGTTGT-TGTTATT-CTCAAGAAGGAAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035591 29 -  71996105 T---TTGTTGTTGT-TG---TT-CTCAAGAAGGAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     219750 29 +    290775 T---TTGTTGTTGT-TG---TT-CTCAAGAAGGAAAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674605 29 -   3067355 T---TTATTATTGT-TG---TT-CTCAAGAAGGAAAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48705 23 +    132061 T---TT-------TCTT---TC-CTCAAAAAGAAAAA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              758 22 -    110772 T---TA-------T-TT---TC-CTCAAAAAGAAAAA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1    1504045 22 +   1771730 T---TT-------T-TT---TC-CTCAAAAAGAAAAA
i cebCap1.NW_016107755v1   C 0 n 0
s aotNan1.NW_018509740v1     339293 21 -    457564 T---TT---------TT---TC-CTCAAAAATAAAAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           150523 30 +  18854210 T---TTATTTTTGT-TT---TTGCTCAAGAAGAAGAA
i otoGar3.GL873550         C 0 I 45
s mm10.chr17               57965201 31 -  94987271 T---TTTTTTTttt-tggt-tt-ttcgagacaggatt
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            78951  8 +    102524 -------------------------CAGGAAGG----
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173391 126 + 123392446 I
e proCoq1.NW_012152574v1     640824 41 +    730504 I
e canFam3.chr35            26257667  1 +  26524999 I

a score=25772.000000
s hg38.chr6_GL000254v2_alt   924207 2 +   4827813 TT
s panTro5.chr6             29887129 2 + 175400573 TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121436 2 + 173848474 TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920376 2 +   6154872 TT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634934 2 + 122973662 TT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30119007 2 + 172585720 TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29782086 2 - 170955103 TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829615 2 -   2996164 TT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     579117 2 +    766320 TT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035620 2 -  71996105 TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     219779 2 +    290775 TT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674634 2 -   3067355 TT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48728 2 +    132061 TT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              780 2 -    110772 TT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     268351 2 -   1771730 TT
i cebCap1.NW_016107755v1   I 836 C 0
s aotNan1.NW_018509740v1     339314 2 -    457564 TT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           150598 2 +  18854210 TC
i otoGar3.GL873550         I 45 C 0
s mm10.chr17               57965232 2 -  94987271 tt
i mm10.chr17               C 0 I 922
e micMur3.chr6               173391 126 + 123392446 I
e dasNov3.JH582591            78959 0 +    102524 C
e proCoq1.NW_012152574v1     640824 41 +    730504 I
e canFam3.chr35            26257667 1 +  26524999 I

a score=42389.000000
s hg38.chr6_GL000254v2_alt   924209 4 +   4827813 GAgg
s panTro5.chr6             29887131 4 + 175400573 GAgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121438 4 + 173848474 GAgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920378 4 +   6154872 GGgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634936 4 + 122973662 GGgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30119009 4 + 172585720 GGgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29782088 4 - 170955103 GGgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829617 4 -   2996164 GGgg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     579119 4 +    766320 GGgg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035622 4 -  71996105 GGgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     219781 4 +    290775 GGgg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674636 4 -   3067355 GGgg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48730 4 +    132061 GGgg
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              782 4 -    110772 GGgg
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     268353 4 -   1771730 GGgg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339316 4 -    457564 GGgg
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           150600 4 +  18854210 TTgg
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               173391 126 + 123392446 I
e mm10.chr17               57965234 922 -  94987271 I
e dasNov3.JH582591            78959 0 +    102524 C
e proCoq1.NW_012152574v1     640824 41 +    730504 I
e canFam3.chr35            26257667 1 +  26524999 I

a score=1112742.000000
s hg38.chr6_GL000254v2_alt   924213 111 +   4827813 ccgggtgtggtggtttatgcccataatcccagcgctttgg--ggccaaggcaggcggatcacctgaggtcaggagttcgagaccagcctg-gccaacagtgtgaaacctcatct
s panTro5.chr6             29887135 106 + 175400573 ccgggtgtggtggc-----cccataatcccagcgctttgg--ggccaaggcaggcggatcacctgaggtcaggagttcgagaccagcctg-gccaacagtgtgaaacctcatct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121442 106 + 173848474 ccgggtgtggtggc-----cccataatcccagcgctttgg--ggccaaggcaggcggatcacctgaggtcaggagttcgagaccagcctg-gccaacagtgtgaaacctcatct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920382 111 +   6154872 ccgggtgtggtgatttatgcccataatcccagcgctttgg--ggccaaggcaggcggatcacctgaggtcaggagttcgagaccagcctg-gccaacagtgtgaaacctcatct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74634940 111 + 122973662 ccaggtgtggtggtttatgcccataatcccagctctttgg--ggccaaggcaggtggatcacctgaggtcaggagttcgagaccagcctg-gccaacagtgtgaaacctcatct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30119013 111 + 172585720 ccgggtgtggtggcttacgcctatcatcccagcgctttgg--agccaaggaaggcagatcacctgaggtcaggagcacgagaccagcctg-gccaacagtgtgaaacctcatct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29782092 111 - 170955103 ccgggtgtggtggcttacgcctatcatcccagcgctttgg--agccaaggaaggcagatcacctgaggtcaggagcacgagaccagcctg-gccaacagtgtgaaacctcatct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829621 111 -   2996164 ccgggtgtggtggcttacgcctatcatcccagcgctttgg--agccagggaaggcagatcacctgaggtcaggagcacgagaccagcctg-gccaacagtgtgaaacctcatct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     579123 104 +    766320 ccgggtgtggtggcttacgcctatcatcccagcgctttgg--agcca-------cagatcacctgaggtcaggagtatgagaccagcctg-gccaacagtgtgaaacctcatct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29035626 111 -  71996105 ccgggtgtggtggcttacgcctatcatcccagcgctttgg--agccaaggaaggcagatcacctgaggtcaggagtacgagaccagcctg-gccaacagtgtgaaacctcatct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     219785 111 +    290775 ctgggtgtggtggcttacgcctatcatcccagcgctttgg--agccaaggaaggcagatcacctgaggtcaggagtacgagacaagcctg-gccaacagtgtgaaacctcatct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2674640 111 -   3067355 ccgggtgtggtggcttacgcctatcatcccagcgctttgg--agccaaggaaggcagattacctgaggtcaggagtatgagaccagcctg-gccaacagtgtgaaacgtcatct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48734 112 +    132061 cc-gatgtggtggctcacgcttataatcccagcgctttgggaggccaatgcagatggatcacctaagatcaggagttcaaaaccagcctg-gccaacagggtgaaacctcatct
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              786 113 -    110772 ccaggtgtggtggctcacgcctataatcccagtgctttgggaggccaactcaggaggatcacctaagatcaggagttcaagaccagcttg-accgacagggtgaaccctcatct
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     268357 113 -   1771730 ccaggtgtggtggctcatgcctacagtcccagtgctttgggaggccaatgcagatggatcacctaagatcaagagttcaagaccagcctg-gccaacaggatgaaacctcatct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339320 113 -    457564 ccaggtgtggtggctcacgcctataatcccagccctttgggaggccaacgcagacggatcacctaagatcaggagttcaagaccagcctg-gccaacagggtgaaacctcatct
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           150604 114 +  18854210 ccaggcgcagtggctcacgcctataatcctagtactctgggaggccaaggtgggtggattacttgggctcacgagtttgagaccagcctgagcaaaaaaagcaagaccctgtct
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57966156 105 -  94987271 ctgagtgtggtggtatacagctttgatcctagcacttggg-aggcaaaggcaggcagatctct-------gtgagttctagcccagccag-ggctacacagtgagatcctgtct
i mm10.chr17               I 922 I 149
s dasNov3.JH582591            78959  50 +    102524 --------------------------CCCAAGAGAT--GG--GGCCACAGGGCAGGGGGCACCTAAGGT--GGGGCTCAGGA--------------------------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173391 126 + 123392446 I
e proCoq1.NW_012152574v1     640824  41 +    730504 I
e canFam3.chr35            26257667   1 +  26524999 I

a score=867382.000000
s hg38.chr6_GL000254v2_alt   924324  89 +   4827813 ttactaaaaata-----------------------------------------------------------------------------------------------caaaaattagctggatgcggcggtaggtgcctgtaa--tgccagctactcgggaggctgaggcaggagaatcacttgaa
s panTro5.chr6             29887241  89 + 175400573 ttactaaaaata-----------------------------------------------------------------------------------------------caaaaattagctgggtgcggcggtaggtgcctgtaa--tcccagctactcaggaggctgaggcaggagaatcacttgaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121548  89 + 173848474 ttactaaaaata-----------------------------------------------------------------------------------------------caaaaattagctgggtgcggcggtaggtgcctgtaa--tcccagctactcaggaggctgaggcaggagaatcacttgaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920493  89 +   6154872 ttactaaaaaaa-----------------------------------------------------------------------------------------------caaaaattagctgggtgtggcggtaggtgcctgtaa--tcccagctactcaggaggctgaggcaggagaatcacttgaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74635051  89 + 122973662 ttactaaaaata-----------------------------------------------------------------------------------------------caaaaattagctgggcgtggtggtaggcgcctgtaa--tcccagctactcaggaggctgaggcaggagaatcacttgaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30119124  89 + 172585720 ttactaaaaata-----------------------------------------------------------------------------------------------caaaaattagctgggtgtggtggcaggtacctgtaa--tcccagctactcaggaggttgaggcaggagaatcgcttgaa
i rheMac8.chr4             C 0 I 150
s macFas5.chr4             29782203  89 - 170955103 ttactaaaaata-----------------------------------------------------------------------------------------------caaaaattagctgggcgtggtggcaggtacctgtaa--tcccagctactcaggaggttgaggcaggagaatcgcttgaa
i macFas5.chr4             C 0 I 150
s macNem1.NW_012011356v1    2829732  89 -   2996164 ttactaaaaata-----------------------------------------------------------------------------------------------caaaaattagctgggcgtggtggcaggtacctgtaa--tcccagctactcaggaggttgaggcaggagaatcgcttgaa
i macNem1.NW_012011356v1   C 0 I 129
s cerAty1.NW_012002711v1     579227  89 +    766320 ttactaaaaata-----------------------------------------------------------------------------------------------caaaaattagctgggcgtggtggcaggtacctgtaa--tcccagcaactcaggaggttgaggcaggagaatcacttgaa
i cerAty1.NW_012002711v1   C 0 I 128
s chlSab2.chr17            29035737  89 -  71996105 ttactaaaaata-----------------------------------------------------------------------------------------------caaaaattagctgggcgtgatggcaggtacctgtaa--tcccagctactcaggaggttgaggcaggagaatcacttgaa
i chlSab2.chr17            C 0 I 148
s manLeu1.NW_012099233v1     219896  89 +    290775 ttactaaaaata-----------------------------------------------------------------------------------------------caaaaattagctgggcgtggtggcaggtacctgtaa--tcccagctactcaggaggttgaagcaggagaatcgcttgaa
i manLeu1.NW_012099233v1   C 0 I 7969
s colAng1.NW_012115566v1    2674751  89 -   3067355 ttactaaaaata-----------------------------------------------------------------------------------------------caaaaattagctgggcgtggtggcaggtacctgtaa--tcccagctactcaggaggctgaggcaggagaatcgcttgaa
i colAng1.NW_012115566v1   C 0 I 134
s calJac3.chrUn_GL286223      48846  89 +    132061 ttactataaata-----------------------------------------------------------------------------------------------caaaaattacccgggtgtgttggcacgcacctgtaa--tcccagctacttggaaggctgagacaggagaactgctggaa
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              899  89 -    110772 ttcctaaaaata-----------------------------------------------------------------------------------------------caaaaattacccgggtgtgttggcaggtacctgtaa--tcccagctactcggaaggttgagacaggagaacggcttgaa
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     268470  89 -   1771730 ttactaaaaata-----------------------------------------------------------------------------------------------caaaaattacccgggtgtgttggcagtcacctgtaa--tcccagctactcagaaggctgagaaaggagaaccgcttgaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339433  89 -    457564 ttactaaaaata-----------------------------------------------------------------------------------------------caaaaattacccgggtgtgttggcaggcacctgtaa--tcccagctactcggaaggccgagacaggagaaccgcttaaa
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           150718 184 +  18854210 ctactaaaaatagaaaaGCTgggcagcacctgtggctcagtgagtagggcgctggccccatataccgagggtggcgggttcaaatccagtccaggccaaattgcaacaaaaaaatagccgggcgttgtggtgggagcctgtag--tcctagctacttgggaggctgaggcaagagaatcatgtagg
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            79009  57 +    102524 --------------------------------------------------------------------------------------------------------------------GCCAGAGGTGGAGGCAGCTGGCAGAAAGGTGAAAGCAACCGTGGAGACGGTCACATG-------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173391 126 + 123392446 I
e mm10.chr17               57966261 149 -  94987271 I
e proCoq1.NW_012152574v1     640824  41 +    730504 I
e canFam3.chr35            26257667   1 +  26524999 I

a score=12175.000000
s hg38.chr6_GL000254v2_alt   924413 3 +   4827813 cct
s panTro5.chr6             29887330 3 + 175400573 cct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121637 3 + 173848474 cct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920582 3 +   6154872 cct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74635140 3 + 122973662 cct
i nomLeu3.chr1a            C 0 C 0
s calJac3.chrUn_GL286223      48935 3 +    132061 cct
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              988 3 -    110772 cct
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     268559 3 -   1771730 cct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339522 3 -    457564 ctt
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           150902 3 +  18854210 ccc
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            79066 2 +    102524 -CT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173391 126 + 123392446 I
e mm10.chr17               57966261 149 -  94987271 I
e proCoq1.NW_012152574v1     640824 41 +    730504 I
e canFam3.chr35            26257667 1 +  26524999 I
e colAng1.NW_012115566v1    2674840 134 -   3067355 I
e manLeu1.NW_012099233v1     219985 7969 +    290775 I
e chlSab2.chr17            29035826 148 -  71996105 I
e cerAty1.NW_012002711v1     579316 128 +    766320 I
e macNem1.NW_012011356v1    2829821 129 -   2996164 I
e macFas5.chr4             29782292 150 - 170955103 I
e rheMac8.chr4             30119213 150 + 172585720 I

a score=287198.000000
s hg38.chr6_GL000254v2_alt   924416 42 +   4827813 gggaggcggaggttgcagggaggcggaggttgcagtgagcca
s panTro5.chr6             29887333 42 + 175400573 gggaggcggaggatgcagggaggcggaggttgcagtgagcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121640 42 + 173848474 gggaggcggaggatgcagggaggcggaggttgcagtgagcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920585 42 +   6154872 gggaggcggaggttgcagggaggcggaggttgcagtgagcca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74635143 42 + 122973662 gggaggcggaggttgcagggaggcagaggttgcggtgagcca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30119363 42 + 172585720 GGgaggcagaagttgcagggaggtggaggttgcagtgagcca
i rheMac8.chr4             I 150 C 0
s macFas5.chr4             29782442 42 - 170955103 GGgaggcagaagttgcagggaggtggaggttgcagtgagcca
i macFas5.chr4             I 150 C 0
s macNem1.NW_012011356v1    2829950 42 -   2996164 GGgaggcagaagttgcagggaggtggaggttgcagtgagcca
i macNem1.NW_012011356v1   I 129 C 0
s cerAty1.NW_012002711v1     579444 42 +    766320 GGGAGGCAGAGGTTGCAgggaggtggaggttgcagtgagcca
i cerAty1.NW_012002711v1   I 128 C 0
s chlSab2.chr17            29035974 42 -  71996105 GGGAGGCAGAGGTTGCAgggaggtggagattgcagtgagcca
i chlSab2.chr17            I 148 C 0
s colAng1.NW_012115566v1    2674974 42 -   3067355 GGGAGGCAGAGATTGCAgggaggtagaggttgcagtgagcca
i colAng1.NW_012115566v1   I 134 C 0
s calJac3.chrUn_GL286223      48938 25 +    132061 -----------------gggaggcagaggttgcagtgagccg
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388              991 25 -    110772 -----------------gggaggcagaggttgcagtgagcca
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     268562 25 -   1771730 -----------------gggaggcagaggttgcagtgagcca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339525 25 -    457564 -----------------gggaggcagaggttgcagtgagcca
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           150905 25 +  18854210 -----------------aggagttggaggttgctgtgagctg
i otoGar3.GL873550         C 0 I 12
s dasNov3.JH582591            79068 14 +    102524 --------------------------GGAATGTTCTGCCC--
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173391 126 + 123392446 I
e mm10.chr17               57966261 149 -  94987271 I
e proCoq1.NW_012152574v1     640824 41 +    730504 I
e canFam3.chr35            26257667  1 +  26524999 I
e manLeu1.NW_012099233v1     219985 7969 +    290775 I

a score=328825.000000
s hg38.chr6_GL000254v2_alt   924458 37 +   4827813 agattgcaccactgca-ctccagcctgggcgacagaga
s panTro5.chr6             29887375 37 + 175400573 agattgcaccactgca-ctccagcctgggcgacagaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121682 37 + 173848474 agattgcaccactgca-ctccagcctgggcgacagaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920627 37 +   6154872 agattgcaccactgca-ctccagcctgggcgacagaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74635185 37 + 122973662 agattgcaccactgca-ctccagcctgggcgacagaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30119405 37 + 172585720 agatcgcaccactgca-ctccagcctgggcgacagtga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29782484 37 - 170955103 agatcgcaccactgca-ctccagcctgggcgacagtga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2829992 37 -   2996164 agatcgcaccactgca-ctccagcctgggcgacagtga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     579486 36 +    766320 agatcgcacc-ctgca-ctccagcctgggcgacagtga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29036016 37 -  71996105 agatcgcaccactgca-ctccagcctgggcgacagtga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     227954 37 +    290775 agatcgcaccactgca-ctccagcctgggcgacagtga
i manLeu1.NW_012099233v1   I 7969 C 0
s colAng1.NW_012115566v1    2675016 37 -   3067355 agattgcagcactgca-ctccagcctgggcgacagtga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      48963 35 +    132061 agatcgagccactgca-ctccagcctgggcaaca--ga
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             1016 35 -    110772 agatcgagccactgca-ctcgagcctgagcaaca--ga
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     268587 35 -   1771730 agatcgagccactgca-ctccagcctgggcaaca--ga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339550 35 -    457564 agatcaagccactgca-ctccagcctgggcaaca--ga
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           150942 22 +  18854210 -------------gca-ctctaccgagggaaata--ag
i otoGar3.GL873550         I 12 C 0
s dasNov3.JH582591            79082 30 +    102524 AAGTCAC-TCACAGTATCTCCAGCCCAGAGA-------
i dasNov3.JH582591         C 0 I 16
e micMur3.chr6               173391 126 + 123392446 I
e mm10.chr17               57966261 149 -  94987271 I
e proCoq1.NW_012152574v1     640824 41 +    730504 I
e canFam3.chr35            26257667  1 +  26524999 I

a score=83352.000000
s hg38.chr6_GL000254v2_alt   924495  8 +   4827813 gtaagact--
s panTro5.chr6             29887412  8 + 175400573 gtaagact--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121719  8 + 173848474 gtaagact--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920664  8 +   6154872 gtaagact--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74635222  8 + 122973662 gtaagact--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30119442  8 + 172585720 gtaagact--
i rheMac8.chr4             C 0 I 11
s macFas5.chr4             29782521  8 - 170955103 gtaagact--
i macFas5.chr4             C 0 I 11
s macNem1.NW_012011356v1    2830029  8 -   2996164 gtaagact--
i macNem1.NW_012011356v1   C 0 I 17
s cerAty1.NW_012002711v1     579522  8 +    766320 gtaagact--
i cerAty1.NW_012002711v1   C 0 I 11
s chlSab2.chr17            29036053  8 -  71996105 gtaagact--
i chlSab2.chr17            C 0 I 11
s manLeu1.NW_012099233v1     227991  8 +    290775 gtaagact--
i manLeu1.NW_012099233v1   C 0 I 11
s colAng1.NW_012115566v1    2675053  8 -   3067355 gtaagact--
i colAng1.NW_012115566v1   C 0 I 11
s calJac3.chrUn_GL286223      48998  8 +    132061 gtaagact--
i calJac3.chrUn_GL286223   C 0 I 2
s saiBol1.JH378388             1051  8 -    110772 gtaagact--
i saiBol1.JH378388         C 0 I 2
s cebCap1.NW_016107755v1     268622  6 -   1771730 gtaaga----
i cebCap1.NW_016107755v1   C 0 I 2
s aotNan1.NW_018509740v1     339585  8 -    457564 gtaagact--
i aotNan1.NW_018509740v1   C 0 I 2
s otoGar3.GL873550           150964 10 +  18854210 gtgagactct
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               173391 126 + 123392446 I
e mm10.chr17               57966261 149 -  94987271 I
e dasNov3.JH582591            79112 16 +    102524 I
e proCoq1.NW_012152574v1     640824 41 +    730504 I
e canFam3.chr35            26257667  1 +  26524999 I

a score=59165.000000
s hg38.chr6_GL000254v2_alt   924503 16 +   4827813 gtctcaa-aaa----ataaat
s panTro5.chr6             29887420 16 + 175400573 gtctcaa-aaa----ataaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121727 16 + 173848474 gtctcaa-aaa----ataaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920672 16 +   6154872 gtctcaa-aaa----ataaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74635230 11 + 122973662 gtctcaa-aaa----a-----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30119461  7 + 172585720 gtctcag--------------
i rheMac8.chr4             I 11 C 0
s macFas5.chr4             29782540 15 - 170955103 gtctcag-aaa----aaaaa-
i macFas5.chr4             I 11 C 0
s cerAty1.NW_012002711v1     579541 11 +    766320 gtctcag-aaa----a-----
i cerAty1.NW_012002711v1   I 11 C 0
s chlSab2.chr17            29036072 16 -  71996105 gtctcag-gaa----aaaaag
i chlSab2.chr17            I 11 C 0
s manLeu1.NW_012099233v1     228010 17 +    290775 gtctcagaaaa----aaaaaa
i manLeu1.NW_012099233v1   I 11 C 0
s colAng1.NW_012115566v1    2675072 16 -   3067355 gtctcaa-aaa----aaaaaa
i colAng1.NW_012115566v1   I 11 I 7
s calJac3.chrUn_GL286223      49008 20 +    132061 gtctcaa-aaaaatgataata
i calJac3.chrUn_GL286223   I 2 C 0
s saiBol1.JH378388             1061 16 -    110772 gtctcaa-aaa----ataaaa
i saiBol1.JH378388         I 2 C 0
s cebCap1.NW_016107755v1     268630 17 -   1771730 gtctcaa-aaaa---ataaaa
i cebCap1.NW_016107755v1   I 2 C 0
s aotNan1.NW_018509740v1     339595 16 -    457564 gtctcaa-aaa----ataata
i aotNan1.NW_018509740v1   I 2 C 0
s otoGar3.GL873550           150974 15 +  18854210 gtctcta-caa----aaaaa-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               173391 126 + 123392446 I
e mm10.chr17               57966261 149 -  94987271 I
e dasNov3.JH582591            79112 16 +    102524 I
e proCoq1.NW_012152574v1     640824 41 +    730504 I
e canFam3.chr35            26257667  1 +  26524999 I
e macNem1.NW_012011356v1    2830037 17 -   2996164 I

a score=93303.000000
s hg38.chr6_GL000254v2_alt   924519 20 +   4827813 gaataaataaa--aaGgaagaa
s panTro5.chr6             29887436 21 + 175400573 aaataaataaat-aaaaaGgaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121743 22 + 173848474 aaataaataaataaataaaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920688 20 +   6154872 aaataaataaa--aaGgaagaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74635241 16 + 122973662 ----aaaaaaa--aaaaaaaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30119468 20 + 172585720 aaaaaaaaaaa--aaaaagaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29782555 12 - 170955103 --------aaa--aaaaagaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2830054 20 -   2996164 gaaaaaaaaaa--aaaaagaaa
i macNem1.NW_012011356v1   I 17 C 0
s cerAty1.NW_012002711v1     579552 17 +    766320 ---aaaaaaaa--aaaaagaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29036088 20 -  71996105 aaagaaagaaa--aaagaaGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     228027 20 +    290775 aaaaaaagaaa--gaagaagaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2675095 20 -   3067355 gaaaaaagaaa--agaaagaaa
i colAng1.NW_012115566v1   I 7 C 0
s calJac3.chrUn_GL286223      49028 17 +    132061 ---ataaagaa--aaaaagaaa
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             1077 17 -    110772 ---taaaataa--agaaagaaa
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     268647 17 -   1771730 ---taaaataa--agaaagaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339611 16 -    457564 ----ataataa--agaaagaaa
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           150989 20 +  18854210 ggacaaaaaaa--aaaatagaa
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               173391 126 + 123392446 I
e mm10.chr17               57966261 149 -  94987271 I
e dasNov3.JH582591            79112 16 +    102524 I
e proCoq1.NW_012152574v1     640824 41 +    730504 I
e canFam3.chr35            26257667  1 +  26524999 I

a score=17102.000000
s hg38.chr6_GL000254v2_alt   924539  8 +   4827813 ---gaa--gaag------a
s panTro5.chr6             29887457  8 + 175400573 ---gaa--gaag------a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121765  8 + 173848474 ---gaa--gaag------a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920708  8 +   6154872 ---gaa--gaag------a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74635257  8 + 122973662 ---gaa--gaaG------A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30119488  8 + 172585720 ---gaa--gaaG------A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29782567  8 - 170955103 ---gaa--gaaG------A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2830074  8 -   2996164 ---gaa--gaaG------A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     579569 12 +    766320 ---GGG--GAAGAAGA--A
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29036108  7 -  71996105 ---CAA--GAA-------A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     228047  8 +    290775 ---gaa--gaag------a
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2675115 14 -   3067355 ---gaa--gaagaagaagg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      49045  7 +    132061 ---GAA--GAA-------A
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             1094  7 -    110772 ---GAA--GAA-------A
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     268664  7 -   1771730 ---GAA--TAA-------A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339627  7 -    457564 ---gaa--GAA-------A
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           151009 10 +  18854210 ---aaactgagg------c
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            79128  8 +    102524 GTGCAA--GA---------
i dasNov3.JH582591         I 16 C 0
e micMur3.chr6               173391 126 + 123392446 I
e mm10.chr17               57966261 149 -  94987271 I
e proCoq1.NW_012152574v1     640824 41 +    730504 I
e canFam3.chr35            26257667  1 +  26524999 I

a score=87563.000000
s hg38.chr6_GL000254v2_alt   924547 14 +   4827813 a-------gaacaaTT-------------------------------------------GCAAT
s panTro5.chr6             29887465 14 + 175400573 a-------gaagaaTT-------------------------------------------GCAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121773 14 + 173848474 a-------gaagaaTT-------------------------------------------GCAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920716 14 +   6154872 a-------gaacaaTT-------------------------------------------GCAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74635265 21 + 122973662 ACACAATTGCACAATT-------------------------------------------GCAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30119496 14 + 172585720 A-------AAAAAATT-------------------------------------------GCATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29782575 14 - 170955103 A-------AAAAAATT-------------------------------------------GCATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2830082 14 -   2996164 A-------AAAAAATT-------------------------------------------GCATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     579581 14 +    766320 A-------AAAAAATT-------------------------------------------GCATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29036115 14 -  71996105 A-------AAAAAATT-------------------------------------------GCATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     228055 14 +    290775 a-------gaaaaaTT-------------------------------------------GCATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2675129 14 -   3067355 a-------gaaaaaTT-------------------------------------------GCATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      49052 14 +    132061 A-------GAAAAGTT-------------------------------------------GCATT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             1101 14 -    110772 A-------GAAGAGTT-------------------------------------------ACATG
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     268671 14 -   1771730 A-------GAAAAGTT-------------------------------------------GCATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339634 14 -    457564 A-------GAAAAGTT-------------------------------------------TCATT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           151019 57 +  18854210 a-------agaggattgcttgagcccaagttggaggttgctgtgagctatgatgtcacagcatt
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26257668 14 +  26524999 A-------GGGAAATG-------------------------------------------GAGCT
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            79136 14 +    102524 A-------GAAAACCT-------------------------------------------GAGCT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173391 126 + 123392446 I
e mm10.chr17               57966261 149 -  94987271 I
e proCoq1.NW_012152574v1     640824 41 +    730504 I

a score=23864.000000
s hg38.chr6_GL000254v2_alt   924561 2 +   4827813 CC
s panTro5.chr6             29887479 2 + 175400573 CC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121787 2 + 173848474 CC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920730 2 +   6154872 AC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74635286 2 + 122973662 CC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30119510 2 + 172585720 CC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29782589 2 - 170955103 CC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2830096 2 -   2996164 CC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     579595 2 +    766320 CC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29036129 2 -  71996105 CC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     228069 2 +    290775 CC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2675143 2 -   3067355 CC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      49066 2 +    132061 CC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             1115 2 -    110772 CC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     268685 2 -   1771730 CC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339648 2 -    457564 CC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           151076 1 +  18854210 c-
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               57966410 2 -  94987271 cc
i mm10.chr17               I 149 C 0
s canFam3.chr35            26257682 2 +  26524999 CC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            79150 2 +    102524 CC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173391 126 + 123392446 I
e proCoq1.NW_012152574v1     640824 41 +    730504 I

a score=396212.000000
s hg38.chr6_GL000254v2_alt   924563 39 +   4827813 TCCCTGGCTCTAGAATGTCATTT--------AAAAGTCGAGTGTCTT
s panTro5.chr6             29887481 39 + 175400573 TCCCTGGCTCTAGAATGTCATTT--------AAAAGTCGAGTGTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121789 39 + 173848474 TCCCTGGCTCTAGAATGTCATTT--------AAAAGTCGAGTGTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920732 39 +   6154872 TCCCTGGCTCTAGAATGTCATTT--------AAAAGTCGAGTGTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74635288 39 + 122973662 TCCCTGGCTCTAGAATTTCATTT--------AAAAGTCGAGTGTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30119512 39 + 172585720 TTCCTGGATCTAGAATTTCATTT--------AAAAGTCAAGTGTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29782591 39 - 170955103 TTCCTGGATCTAGAATTTCATTT--------AAAAGTCAAGTGTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2830098 39 -   2996164 TTCCTGGATCTAGAATTTCATTT--------AAAAGTCAAGTGTCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     579597 39 +    766320 TTCCTGGATCTAGAATTTCATTT--------AAAAGTCGAGTGTCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29036131 39 -  71996105 TTCCTGGATCTAGAATTTCATTT--------AAAAGTCGAGTGTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     228071 39 +    290775 TTCCTGGATCTAGAATTTCATTT--------AAAAGTCGAGTGTCCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2675145 39 -   3067355 TCCCTGGATCTAGAATTTAATTT--------AAAAGTCGAGTGTCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      49068 38 +    132061 TCCCTGACCCTAAAATTCCTTT---------AAAAGTTGAGTGTATT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             1117 36 -    110772 TCCCTGATTCAAAAATTCCTTTC--------AAAAGTCGAGTGT---
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     268687 37 -   1771730 TCCCTGACTCTAAAATTCCTCTT--------AAAAGTTGAGTGT--A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339650 39 -    457564 TCCCTGACTCTAAAATTCCTTTT--------AAAAGTCGAGTGTATT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     640865 39 +    730504 TCCCTGGCTCTAGAATTCCACTT--------AAAAATGGAGTGCTGC
i proCoq1.NW_012152574v1   I 41 C 0
s otoGar3.GL873550           151079 47 +  18854210 cccagggcaatagtttgagactctgtcccaaaaaaaTCAACCATCTT
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               57966412 32 -  94987271 tcccaagtgctgggat---------------taaagttgtgcgccac
i mm10.chr17               C 0 I 10
s canFam3.chr35            26257684 39 +  26524999 TCCTTGGCTCCTGAATTCCGTGG--------AAAAATCCAGTGCGGT
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            79152 39 +    102524 TCTCTGGTTCTAGAATTCCATTT--------TAAAATCTTTTGTCTC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173391 126 + 123392446 I

a score=785843.000000
s hg38.chr6_GL000254v2_alt   924602 57 +   4827813 CTTCCTTCCCTGTTTTGA-AGCAGCCCTTCTCATGACAGGCTTGCTTGCCAAGGTTCC
s panTro5.chr6             29887520 57 + 175400573 CTTCCTTCCCTGTTTTGA-AGCAGCCCTTCTCATGACAGGCTTGCTTGCCAAGGTTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121828 57 + 173848474 CTTCCTTCCCTGTTTTGA-AGCAGCCCTTCTCATGACAGGCTTGCTTGCCAAGGTTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920771 57 +   6154872 CTTCCTTCCCTGTTTTGA-AGCAACCCTTCTCATGACAGGCTTGCTTGCCAAGGTTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74635327 57 + 122973662 CTTCCTTCCCTGTTTTGA-AGCAGCCCTTCTCATGACAGGCTTGCTTGCCAAGGTTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30119551 57 + 172585720 CTTCCTTCCCTGTTTTGA-AGCACCCCTTCCCATGACAGGCTTACTTGCCAAGGTTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29782630 57 - 170955103 CTTCCTTCCCTGTTTTGA-AGCAGCCCTTCCCATGACAGGCTTACTTGCCAAGGTTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2830137 57 -   2996164 CTTCCTTCCCTGTTTTGA-AGCAGCCCTTCCCATGACAGGCTTACTTGCCAAGGTTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     579636 57 +    766320 CTTCCTTCCCTGTTTTGA-AGCAGCCCTTCCCATGACAGGCTTACTTGCCAAGGTTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29036170 57 -  71996105 CTTCCTTCCCTGTTTTGA-AGCAGCCCTTCCCATGACAGGCTTACTTGCCAAGGTTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     228110 57 +    290775 CTTCCTTCCCTGTTTTGA-AGCAGCCCTTCCCATGACAGGCTTACTTGCCAAGGTTCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2675184 57 -   3067355 CTTCCTTCCCTGTTTTGA-AGCAGCCCTTCCCATGACAGGCTTACTTGCCAAGGTTCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      49106 57 +    132061 CTTTCTTCCCTGTTTTGA-ACCAGCCCTTCCCAAGACAGGCTTGCTTGTCAAGGTTCG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             1153 36 -    110772 ----------------------AGCGCTTCCCAAGACAGGCTTGCTTGTCAAGGTTCG
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     268724 57 -   1771730 TTTTCTTCCCTGTTTTGA-ACCAGCCTTTCCCAAGACAGGCTTGCTTGCCAAGGTTCG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339689 57 -    457564 CTTTCTTCCCTTTTTTGA-ACCAGCCCTTCCCAAGACAGGCTTGCTTGTTAAGGTTTG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               173517 57 + 123392446 CTTCCTTCCCTGTTTTGA-AGCAGCCCTGCCCACGACACGCCTGCCTACCAAGGTTCC
i micMur3.chr6             I 126 I 13
s proCoq1.NW_012152574v1     640904 57 +    730504 TTTCCTTGCCTGTTTTGA-AGCAGCCCTGCCCATGACATGCCTGTTTGTCAAGGCTCC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           151126 57 +  18854210 CTTCCCTCCCTGTTTTGA-AGCAGCCCTTCCTATGACATGCCTGTTTGTCAAGGTTCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57966454 56 -  94987271 cCCTCTCACCCTTTTTGA-AGCAGC-CTTCTTATGATGGATGAATTTGTCACATCTGA
i mm10.chr17               I 10 I 9
s canFam3.chr35            26257724 35 +  26524999 CTTCCTTCCTTG----------------------GACACACTTGTGCGCCCAGGCCC-
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            79191 51 +    102524 ---CTTTTCCTGTTTCGATAACA----TTCCCATGGCATGCCTGTTGGCCAAGCCTCC
i dasNov3.JH582591         C 0 C 0

a score=182470.000000
s hg38.chr6_GL000254v2_alt   924659 15 +   4827813 CTCTGACCTTAAATC
s panTro5.chr6             29887577 15 + 175400573 CTCTGACCTTAAATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121885 15 + 173848474 CTCTGACCTTAAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920828 15 +   6154872 CTCTGACCTTAAATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74635384 15 + 122973662 CTCTGATCTTAAATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30119608 15 + 172585720 CTCTGACCTTCAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29782687 15 - 170955103 CTCTGACCTTCAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2830194 15 -   2996164 CTCTGACCTTCAGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     579693 15 +    766320 CTCTGACCTTCAGTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29036227 15 -  71996105 CTCTGACCTTCAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     228167 15 +    290775 CTCTGACCTTCAGTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2675241 15 -   3067355 CTCTGACCTTCAGTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      49163 15 +    132061 CTGTGACCTTTAGTC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             1189 15 -    110772 CTGTGACCTTCAGTC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     268781 15 -   1771730 CCGTGACCTTCAGTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339746 15 -    457564 CTGTGACCTTCAGTC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     640961 15 +    730504 CTCTGAACCTCGGTT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           151183 15 +  18854210 CTCTAAACCTCAGTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57966519 10 -  94987271 TTGTTATTTT-----
i mm10.chr17               I 9 C 0
s canFam3.chr35            26257759 15 +  26524999 CTGTGACACTCTGTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            79242 15 +    102524 CTCTGACCCTCAGTC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173574 13 + 123392446 I

a score=7271006.000000
s hg38.chr6_GL000254v2_alt   924674 382 +   4827813 TCTTC-CTTTTGGTGTCTTGGACAGGGCAGTTCAGAGTGATAGGACCAAGACACCCTATCCGGGCTCTGGTCGGGGATGAAGTGGAATTGCCATGTCGCATATCTCCTGGGAAGAACGCTACAGGCATGGAGGTGGGGTGGTACCGCCCCCCCTTCTCTAGGGTGGTTCATCTCTACAGAAATGGCAAGGACCAAGATGGAGACCAGGCACCTGAATATCGGGGCCGGACAGAGCTGCTGAAAGATGCTATTGGTGAGGGAAAGGTGACTCTCAGGATCCGGAATGTAAGGTTCTCAGATGAAGGAGGTTTCACCTGCTTCTTCCGAGATCATTCTTACCAAGAGGAGGCAGCAATGGAATTGAAAGTAGAAGGTGAGTAGTG
s panTro5.chr6             29887592 382 + 175400573 TCTTC-CTTTTGGTGTCTTGGACAGGGCAGTTCAGAGTGATAGGACCAAGACACCCTATCCGGGCTCTGGTCGGGGATGAAGTGGAATTGCCATGTCGCATATCTCCTGGGAAGAACGCTACAGGCATGGAGGTGGGGTGGTACCGCCCCCCCTTCTCTAGGGTGGTTCATCTCTACAGAAATGGCAAGGACCAAGATGGAGACCAGGCACCTGAATATCGGGGCCGGACAGAGCTGCTGAAAGATGCTATTGGTGAGGGAAAGGTGACTCTCAGGATCCGGAATGTAAGGTTCTCAGATGAAGGAGGTTTCACCTGCTTCTTCCGAGATCATTCTTATCAAGAGGAGGCAGCAATGGAATTGAAAGTAGAAGGTGAGTAGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30121900 382 + 173848474 TCTTC-CTTTTGGTGTCTTGGACAGGGCAGTTCAGAGTGATAGGACCAAGACACCCTATCCGGGCTCTGGTCGGGGATGAAGTGGAATTGCCATGTCGCATATCTCCTGGGAAGAACGCTACAGGCATGGAGGTGGGGTGGTACCGCCCCCCCTTCTCTAGGGTGGTTCATCTCTACAGAAATGGCAAGGACCAAGATGGAGACCAGGCACCTGAATATCGGGGCCGGACAGAGCTGCTGAAAGATGCTATTGGTGAGGGAAAGGTGACTCTCAGGATCCGGAATGTAAGGTTCTCAGATGAAGGAGGTTTCACCTGCTTCTTCCGAGATCATTCTTACCAAGAGGAGGCAGCAATGGAATTGAAAGTAGAAGGTGAGTAGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5920843 382 +   6154872 TCTTC-CTTTTGGTGTCTTGGACAGGGCAGTTCAGAGTGATAGGACCAAGACAACCTATCCGGGCTCTGGTCGGGGATGAAGTGGAATTGCCATGTCGCATATCTCCTGGGAAGAATGCTACAGGCATGGAGGTGGGGTGGTACCGCCCCCCCTTCTCTAGGGTGGTTCATCTCTACAGAAATGGCAAGGACCAAGATGGAGACCAGGCACCTGAATATCGGGGCCGGACAGAGCTGCTGAAAGATGCTATTGGTGAGGGAAAGGTGACTCTCAGGATCCGGAATGTAAGGTTCTCAGATGAAGGAGGTTTCACCTGCTTCTTCCGAGATCACTCTTACCAAGAGGAGGCAGCAATGGAATTGAAAGTAGAAGGTGAGTAGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74635399 382 + 122973662 TCTTC-CTTTTGGTGTCTTGGACAGGGCAGTTCAGAGTGATAGGACCAAGGCACCCTATCCGGGCTCTGGTCGGGGATGAAGTGGAATTGCCATGTCGCATATCTCCTGGGAAGAACGCTACAGGCATGGAGGTGGGGTGGTACCGCCCCCCCTTCTCTAGGGTGGTTCATCTCTACAGAAACGGCAGGGACCAAGATGGAGAGCAGGCACCTGAATATCGGGGCCGGACAGAGCTGCTGAAAGATGCCATTGGTGAGGGAAAGGTGACTCTCAGGATCCAGAATGTAAGGTTCTCAGATGAAGGAGGTTTCACCTGCTTCTTCCGAGATCATTCTTACCAAGAGGAGGCAGCAATGGAATTGAAAGTAGAAGGTGAGTAGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30119623 382 + 172585720 TCTTC-CTTTTGGTGTCTTCGACAGGACAGTTCAGAGTGATAGGACCAAGACAACCTATCCGGGCTCTGGTCGGTGATGAAGTGGAATTGCCATGTCGCATATCTCCTGGGAAGAACGCTACAGGCATGGAAGTGGGATGGTACCGTCCCCCCTTCTCTAGGGTGGTTCATCTCTACAGAAATGGCAGGGACCAAGATGGAGAGCAAGCACCTGAATATCGGGGCCGGACAGAGCTGCTGAAAGACGCTATTGGTGAGGGAAAGGTGACTCTCAGGATCCGGAATGTAAGGTTCTCAGATGAAGGAGGTTTCACCTGCTTCTTCCGAGATCATTCTTACCAAGAGGAGGCAGCAATAGAATTGAAAGTGGAAGGTGAGTAGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29782702 382 - 170955103 TCTTC-CTTTTGGTGTCTTCGACAGGACAGTTCAGAGTGATAGGACCAAGACAACCTATCCGGGCTCTGGTCGGTGATGAAGTGGAATTGCCATGTCGCATATCTCCTGGGAAGAACGCTACAGGCATGGAAGTGGGATGGTACCGGCCCCCCTTCTCTAGGGTGGTTCATCTCTACAGAAATGGCAGGGACCAAGATGGAGAGCAAGCACCTGAATATCGGGGCCGGACAGAGCTGCTGAAAGACGCTATTGGTGAGGGAAAGGTGACTCTCAGGATCCGGAATGTAAGGTTCTCAGATGAAGGAGGTTTCACCTGCTTCTTCCGAGATCATTCTTACCAAGAGGAGGCAGCAATAGAATTGAAAGTGGAAGGTGAGTAGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2830209 382 -   2996164 TCTTC-CTTTTGGTGTCTTCGACAGGACAGTTCAGAGTGATAGGACCAAGACAACCTATCCGGGCTCTGGTCGGTGATGAAGTGGAATTGCCATGTCGCATATCTCCTGGGAAGAACGCTACAGGCATGGAAGTGGGATGGTACCGGCCCCCCTTCTCTAGGGTGGTTCATCTCTACAGAAATGGCAGGGACCAAGATGGAGAGCAAGCACCTGAATATCGGGGCCGGACAGAGCTGCTGAAAGACGCTATTGGTGAGGGAAAGGTGACTCTCAGGATCCGGAATGTAAGGTTCTCAGATGAAGGAGGTTTCACCTGCTTCTTCCGAGATCATTCTTACCAAGAGGAGGCAGCAATAGAATTGAAAGTGGAAGGTGAGTAGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     579708 382 +    766320 TCTTC-CTTTCGGTGTCTTCAACAGGACAGTTCAGAGTGATAGGACCAAGACAACCTATCCGGGCTCTGGTCGGTGATGAAGTGGAATTGCCATGTCGCATATCTCCTGGGAAGAACGCTACAGGCATGGAAGTGGGATGGTACCGGCCCCCCTTCTCTAGGGTGGTTCATCTCTACAGAAATGGCAGGGACCAAGATGGAGAGCAAGCACCTGAATATCGGGGCCGGACAGAGCTGCTGAAAGACGCTATTGGTGAGGGAAAGGTGACTCTCAGGATCCGGAATGTAAGGTTCTCAGATGAAGGAGGTTTCACCTGCTTCTTCCGAGATCATTCTTACCAAGAGGAGGCAGCAATAGAATTGAAAGTGGAAGGTGAGTAGTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29036242 382 -  71996105 TCTTC-CTTTTGGTGTCTTCTACAGGACAGTTCAGAGTGATAGGACCAAGACAACCTATCCGGGCTCTGGTCGGTGATGAAGTGGAATTGCCATGTCGAATATCTCCTGGGAAGAACGCTACAGGCATGGAAGTGGGGTGGTACCGGCCCCCCTTCTCTAGGGTGGTTCATCTCTACAGAAATGGCAGGGACCAAGATGGAGAGCAAGCACCTGAATATCGGGGCCGGACAGAGTTGCTGAAAGACGCTATTGGTGAGGGAAAGGTGACTCTCAGGATCCGGAATGTAAGGTTCTCAGATGAAGGAGGTTTCACCTGCTTCTTCCGAGATCATTCTTACCAAGAGGAGGCAGCAATAGAATTGAAAGTGGAAGGTGAGTAGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     228182 382 +    290775 TCTTC-CTTTCGGTGTCTTCAACAGGACAGTTCAGAGTGATAGGACCAAGACAACCTATCCGGGCTCTGGTCGGTGATGAAGTGGAATTGCCATGTCGCATATCTCCTGGGAAGAACGCTACAGGCATGGAAGTGGGATGGTACCGGCCCCCCTTCTCTAGGGTGGTTCATCTCTACAGAAATGGCAGGGACCAAGATGGAGAGCAAGCACCTGAATATCGGGGCCGGACAGAGCTGCTGAAAGACGCTATTGGTGAGGGAAAGGTGACTCTCAGGATCCGGAATGTAAGGTTCTCAGATGAAGGAGGTTTCACCTGCTTCTTCCGGGATCATTCTTACCAAGAGGAGGCAGCAATAGAATTGAAAGTGGAAGGTGAGTAGTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2675256 382 -   3067355 TCTTC-CTTTTGGTGTCTTGGACAGGACAGTTCAGAGTGATAGGACCAAGACAACCTATCCGGGCTCTGGTCGGTGATGAAGTGGAATTGCCATGTCGCATATCTCCTGGGAAGAACGCTACAGGCATGGAAGTGGGGTGGTACCGGCCCCCCTTCTCCAGGGTGGTTCATCTCTACAGAAATGGCAAGGACCAAGATGGAGAGCAAGCACCAGAATATCGGGGCCGGACAGAGCTGCTGAAAGACGCTATTGGTGAGGGAAAGGTGACTCTTAGGATCCGGAATGTAAGGTTCTCAGATGAAGGAGGTTTCACCTGCTTCTTCCGAGATCATTCTTACCAAGAGGAGGCAGCAATGGAATTGAAAGTGGAAGGTGAGTAGTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      49178 382 +    132061 TCTTC-CTTTTGGTGTCTTGAACAGGGCAGTTCAGAGTGATAGGACCAAGTCACCCCATCCAGGCTCTGGTCGGGGATGCAGCAGAATTGCCATGTCGCATATCTCCTGGGAAGAATGCTACAGGCATGGAGGTGGGGTGGTACCGCTCCCCCTTCTCTAGGGTGGTTCATCTCTACAGAAATGGCAAGGATCAAGATGGAGAGCAGGCACCTGAATATCGGGGTCGAACAGAGCTGCTGAAAGACGATATTGGTGAGGGAAAGGTGACTCTCAAGATCCGGAATGTAAGATTCCCAGATGAAGGAGGTTTCACCTGCTTCTTCCGAGATCATTCTTACCAAGAGGAGGCCGCAATGCAATTGAAAGTGGAAGGTGAGTAGTG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             1204 382 -    110772 TCTTC-CTTTTGGTGTCTTCACCAGGGCAGTTCCGAGTGATAGGACCAAGACACCCCATCCAGGCTCTGGTGGGGGATGAAGTGGAATTGCCATGTCGCATATCTCCTGGGAAGAATGCTACAGGCATGGAGGTGGGTTGGTACCGCCCCCCCTTCTCTAGGGTGGTTCATCTCTACAGAAATGGCAAGGATCAAGACGGAGAGCAGGCACCTGAATATCGGGGTCGAACAGAGCTGCTGAAAGACGGTATTGGTGAGGGAAAGGTGACTCTCAAGATCCGGAATGTAAGGTTCCTAGACGAAGGAGGTTTCACCTGCTTCTTCCGAGATCATTCTTACCAAGAGGAGGCAGTAATGGAATTGCAAGTGGAAGGTGAGTAGTG
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     268796 382 -   1771730 TCTTC-CTTTTGGTGTCTTGAACAGGGCAGTTCAGAGTGATAGGACCAGGACACCCCATCCTGGCTCTGGTCGGGGATGAAGCGGAATTGCCATGTCGCATATCTCCTGGGATGAATGCTACAGGCATGGAGGTGGGGTGGTACCGCTCCCCCTTCTCTAGGGTGGTTCATCTCTATAGAAATGGCAAGGATCAAGTTGGAGAGCAGGCACCTGAATATCGAGGTCGAACAGAGCTGCTGAAAGACGGTATTGGTGAGGGAAAGGTGACTCTCAAGATCCGGAATGTAAGGTTCCCAGATGAAGGAGGTTTCACCTGCTTCTTCCGAGATCATTCTTACCAAGAGGAGGCAGCAATACAATTGCAAGTGGAAGGTGAGTAGTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     339761 382 -    457564 TCTTC-CTTTTGGTGTCTTGAACAGGGCAGTTCAGAGTGATAGGACCAACACACACCATCTGGGCTCTGGTCGGGAATGACGTGGAATTGCCATGCCGCATATCTCCTGGGAAGAATGCCACAGGCATGGAGGTGGGGTGGTACCGCTCCCCCTTCTCTAGGGTGGTTCATCTCTACAGAAATGGCAAGGATCAAGATGGAGAGCAGGCACCTGAATATCGGGGTCGAACAGAGCTGCTGAAAGACAGTATTGGTGAGGGAAAGGTGACTCTCAAGATCCGGAATGTAAGGTTCCCAGATGAAGGAGGTTTCACCTGCTTCTTCCGAGATCATTCTTACCAAGAGGAGGCAGCAATGGAATTGAAAGTGGAAGGTGAGTAGCG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               173587 382 + 123392446 TCTTC-TCTTTGGTGTCTTGGACAGGACAGTTCAGAGTGATAGGACCAAGGCACCCCATCCGGGCTCTGGTGGGAGATGAAGTGGAACTGCCATGCCGTGTGTCTCCTGGGAAGAATGCCACAGGCATGGAGGTGGGGTGGTACCGGCCCCCCTTCTCTAGGGTGGTTCATCTCTACCGAAATGGCAAGGACCAAGATGGAGAGCAGGCCCCTGAATACCGCGGTCGGACAGAACTGCTGAAAGACACTATTGGTGAGGGAAAGGTGACCCTCAAAATCCGGAATGTGAGGTTCTCAGATGAAGGAGGTTTCACCTGCTTCTTCCGAGATCATTCTTACCAAGAGGAGGCAGCAATGGAATTGAAAGTGGAAGGTGAGTAGTG
i micMur3.chr6             I 13 I 997
s proCoq1.NW_012152574v1     640976 382 +    730504 TCTTC-TCTTTGGTGTCTTGGACAGGACAGTTCAGAGTGATAGGACCAAGGCACCCCATCCGGGCTCTGGTGGGAGAGGAAGTGGAACTGCCATGCCGTGTGTCTCCTGGGAAGAATGCCACAGGCATGGAGGTGGGGTGGTACCGGCCCCCCTTCTCTAGGGTGGTTCATCTCTACCGAAACGGCAAGGACCAAGACGGAGAGCAGGCCCCTGAATATCGAGGTCGGACGGAACTGCTGAAAGACACTATTGGTGAGGGAAAGGTCACCCTCAAAATCCGGAGTGTAAGGTTCTCAGATGAAGGAGGTTTCACCTGCTTCTTCCGAGATCATTCTTACCAAGAGGAGGCAGCAATGGAATTGAAAGTGGAAGGTGAGTAGTG
i proCoq1.NW_012152574v1   C 0 I 11046
s otoGar3.GL873550           151198 382 +  18854210 TCTTC-TCTTTGGTGTCTTGGACAGGACAGTTCAGAGTGATAGGACCAAGGCACCCCATCCGGGCTCTCGTTGGAGATGAAGTGGAATTGCCATGTCGTATATCCCCTGGGAAGAATGCTACAGGCATGGAGGTGGGGTGGTACCGTCCCCCCTTCTCTAGGGTGGTTCACCTCTACCGAAATGGCAAGGACCAAGATGGAGAGCAGGCACCTGAATATCGAGGTCGGACGGAACTGCTGAAAGAGGCTATTGGTGAAGGAAAGGTGTCCCTCAAAATCCGGAATGTAAGGTTCTCAGATGAAGGGGGTTTCACCTGCTTTTTTCGAGATCATTCTTATCAAGAAGAGGCAGCAATGGAATTAAAAGTGGAAGGTGAGTAGTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57966529 378 -  94987271 TTCCC-ACTCTTGTGTCTTGGACAGGACAATTCAGAGTGATAGGACCAGGGTATCCCATCCGGGCTTTAGTTGGGGATGAAGCAGAGCTGCCGTGCCGCATCTCTCCTGGGAAAAATGCCACGGGCATGGAGGTGGGTTGGTACCGTTCTCCCTTCTCAAGAGTGGTTCACCTCTACCGAAATGGCAAGGACCAAGATGCAGAGCAAGCACCTGAATACCGGGGACGCACAGAGCTTCTGAAAGAGACTATCAGTGAGGGAAAGGTTACCCTTAGGATTCAGAACGTGAGATTCTCAGATGAAGGAGGCTACACCTGCTTCTTCAGAGACCACTCTTACCAAGAAGAGGCAGCAATGGAGTTGAAAGTGGAAGGTGAGT----
i mm10.chr17               C 0 C 0
s canFam3.chr35            26257774 382 +  26524999 TCTTT-TCTTTGGTGTCTTGCACAGGACAGTTCAGAGTAATAGGACCAGGTCACCCACTCCGGGCTCTGGTGGGGGATGAGGCCGAGCTGCCATGTCGCATCTATCCCGGGAAGAACGCCACAGGCATGGAGGTGGGGTGGTACCGACCCCCCTTTTCCAGAGTGGTCCACCTCTACCGCAATGGCAGGGATCAGGACGCAGAGCAAGCACCTGAGTATCGGGGGCGGACCGAGCTGCTGAAGGAAAGTATGGGCGAGGGGAAGGTAACGCTCAGGATCAGCAATGTTCGGTTCTCTGACGAGGGCGGCTTCACCTGCTTCTTCCGGGATCATTCCTACCAGGAGGAGGCAGCCATGGAACTGAAAGTGGAAGGTGAGTAATG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            79257 383 +    102524 TCTTCTTTTTTGGTGTCTTGGACAGGACAGTTCAGGGTGATAGGACCAGGACACCCCATCCAAGCCCTGGTGGGGGATGAAGTGGAGATGCCATGTCGCATATATCCTGGGAAGAACGCCACGGGCATGGAGGTGGGCTGGTACCGCTCACCCTTCTCCAGGGTGGTCCATCTCTATCGGAATGGCAAGGACCAAGATGGAGAGCAGGCCCCTGAGTACCGGGGCCGGACGGATATGCTCAAAGAGGCCATTGGCGAGGGGAAAGTGACACTCAGGATCCGGAACGTGAGGTTCTCAGACGAGGGAGGCTTCACCTGCTTCTTCCGAGACCACTCGTACCAAGAGGAGGCAGCAGTGCAACTGAAAGTGGAAGGTGAGTCGTG
i dasNov3.JH582591         C 0 C 0

a score=11504.000000
s hg38.chr6_GL000254v2_alt   925056 1 +   4827813 C
s panTro5.chr6             29887974 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30122282 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5921225 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74635781 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120005 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783084 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2830591 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580090 1 +    766320 C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29036624 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     228564 1 +    290775 T
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2675638 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      49560 1 +    132061 C
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             1586 1 -    110772 C
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     269178 1 -   1771730 C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     340143 1 -    457564 C
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26258156 1 +  26524999 C
i canFam3.chr35            C 0 I 20
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57966907 0 -  94987271 C
e dasNov3.JH582591            79640 0 +    102524 C
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e otoGar3.GL873550           151580 0 +  18854210 C

a score=369978.000000
s hg38.chr6_GL000254v2_alt   925057 38 +   4827813 CATATAATATTAG------GTATTAACTGTTGGGTGGCCAAGAA
s panTro5.chr6             29887975 38 + 175400573 CATATAATATTAG------GTATTAACTGTTGGGTGGCCAAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30122283 38 + 173848474 CATATAATATTAG------GTATTAACTGTTGGGTGGCCAAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5921226 38 +   6154872 CATATAATATTAG------GTATTAACTGTTGGGTGGCCAAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74635782 38 + 122973662 CATATACTATTAG------GTATTAACTGTTGGGTGGCCAAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120006 38 + 172585720 CGTATAATATTAG------GTATTAACTGTTGGGTGGCCAGGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783085 38 - 170955103 CGTATAATATTAG------GTATTAACTGTTGGGTGGCCAGGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2830592 38 -   2996164 CGTATAATATTAG------GTATTAACTGTTGGGTGGCCAGGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580091 38 +    766320 CGTATAATATTAG------GTATTAACTGTTGGGTGGCCAGGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29036625 38 -  71996105 CATATAATATTAG------GTATTAACTGTTGGGTGGCCAGGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     228565 38 +    290775 CGTATAATATTAG------GTATTAACTGTTGGGTGGCCAGGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2675639 38 -   3067355 CATATAATATTAG------GTATTAAGTGTTGGGTGGCCAGGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      49561 44 +    132061 CATATAATATTAATATTAGGTATTAACTGTCGGGTGGCCAGGAA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             1587 44 -    110772 CATATAATATTAATATTAGGTATTAACTGTCAGGTGGCCAGGAA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     269179 38 -   1771730 CATATCATATTAC------GTATTAACTGTCGGGTGGCCAAGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     340144 44 -    457564 CATATAATATTAATATTAGGTATTAACTGTCGGGTGGCCAGGAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           151580 12 +  18854210 ------AGATTGA------GACTT--------------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57966907 36 -  94987271 CCTCCAAGGTCAA--------ATGACCTGTAGGATAGTTGACCT
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            79640 38 +    102524 CGTGTAACGATAG------GTGCCGTCTGCTGGGTGGCCCAGAA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258157 20 +  26524999 I

a score=600021.000000
s hg38.chr6_GL000254v2_alt   925095 50 +   4827813 -------------CAATTATTCTCTCAACTGAGATGAGatccctcaacccaaacatctcagtc
s panTro5.chr6             29888013 50 + 175400573 -------------CAATTATTCTCTCAACTGAGATGAGatccctcaacccaaacatctcagtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30122321 50 + 173848474 -------------CAATTATTCTCTCAACTGAGATGAGatccctcaacccaaacatctcagtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5921264 50 +   6154872 -------------CAATTATTCTCTCAACTGAGATGAGatccctcaacccaaacatctcagtc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74635820 50 + 122973662 -------------CAATTATTCTCTCAACTGAGATGAGatccctcaacccaaacatctcactc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120044 50 + 172585720 -------------CAATCATTCTCTCAAttaagatgagatccctcaacccaaacatctcacgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783123 50 - 170955103 -------------CAATCATTCTCTCAATTAAGATGAGatccctcaacccaaacatctcacgc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2830630 50 -   2996164 -------------CAATCATTCTCTCAAttaagatgagatccctcaacccaaacatctcacgc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580129 50 +    766320 -------------CAATCATTCTCTCAAttaagatgagatccctcaacccaaacatctcacgc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29036663 50 -  71996105 -------------CAATCATTCTCTCAATTAAGATGAGatccctcaacccaaacatctcacgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     228603 50 +    290775 -------------CAATCATTCTCTCAATTAAGATGAGatccctcaacccaaacatctcacgc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2675677 50 -   3067355 -------------CAATCATTCTCTCAAttaagatgagatccctcaacccaaacatctcactc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      49605 50 +    132061 -------------CAGTTATTCTTTCAACTGAGATGGtatccctcaacccaaccatctcactc
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             1631 50 -    110772 -------------CAGTTATTCTCCGAACTGAGATGatatccctcaacccaaacttctcactc
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     269217 50 -   1771730 -------------CAGTTATTCTCCCAACTGAGATGatatccctcaacccagacatctcactc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     340188 50 -    457564 -------------CAGTTATTCTCTCAACTGAGATGatatccctcaacccaaccatctcactc
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           151592 50 +  18854210 -------------CAATCATTCTCTCAGTTGAGATGAGatctttcaaccctaagatctcattt
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57966943 50 -  94987271 -------------CCCTTCATCCTTCGGCTGAGATAAGGTTTTTCTACCCAAACTTGTCACTT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26258177 47 +  26524999 -------------CAATCACTCTCCCC-CTGAGATG--ACCCTGCAACCCCAACACCTCACTC
i canFam3.chr35            I 20 I 699
s dasNov3.JH582591            79678 59 +    102524 CGCCTGTGAAACTCCACCATTC--CAGACTGAG-TGAGACCCTTTAACCCAAGCCTCCCTCT-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I

a score=858842.000000
s hg38.chr6_GL000254v2_alt   925145 80 +   4827813 ctgggaatgatttccataaaaatgtacacatcaataaacagaaactc--atgcttagggatgtctgttgcatcattattcag
s panTro5.chr6             29888063 80 + 175400573 ctgggaatgatttccataaaaatgtacacatcaataaacagaaactc--atgcttagggatgtctgttgcatcattattcag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30122371 80 + 173848474 ctgggaatgatttccataaaaatgtacacatcaataaacagaaactc--atgcttagggatgtctgttgcatcattattcag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5921314 79 +   6154872 ct-ggaatgatttccataaaaatgtacacatcaataaacagaaactc--atgcttagggatgtctgttgcatcattattcag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74635870 80 + 122973662 ctgagaatgaattccatacaaatgtacacatcaataaacagaaactc--atgcttagagatgtctgttgcatcattattcag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120094 82 + 172585720 ctaggaatgaattccatacaaacgtacacatcaataagcagaaactcatatgcttagggatgtctgctgcatcattattcag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783173 82 - 170955103 ctaggaatgaattccatacaaacgtacacatcaataagcagaaactcatatgcttagggatgtctgctgcatcattattcag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2830680 82 -   2996164 ctaggaatgaattccatacaaacgtacacatcaataagcagaaactcatatgcttagggatgtctgctgcatcattattcag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580179 82 +    766320 ctaggaatgaattccatacaaacgtacacatcaataagcagaaactcatatgcttagggatgtctgctgcattattattcag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29036713 82 -  71996105 ctgggaatgaattccatacaaacgtacacatcaataagcagaaactcatatgcttagggatgtctgctgcatcattattcag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     228653 82 +    290775 ctgggaatgaattccatacaaacgtacacatcaataagcagaaactcatatgcttagggatgtctgctgcatcattattcag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2675727 82 -   3067355 ctgggaattaattccatacaaacgtacacatcaataagcagaaactcatatgcttagggatgtctgctgcatcattattcag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      49655 82 +    132061 ctgggaatgaattccacagaaaagtcttcatcaataaacagaaactcatatgcttagggatgtctgttgcatcattattcag
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             1681 82 -    110772 ctgggaatgaagtccatggaaaaatcctcatcaataaacagaaagtcatatgcttagggatgtctgttgcatcattatgcag
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     269267 82 -   1771730 ctgggaatgaattccatggaaaagtcctcatcaataaacagaaactcatatgcttagggatgtctgttgcatcattattcag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     340238 82 -    457564 ctgggaatgaattccatagaaaagtcctcatcaataaacagaaactcatatgcttagggatgtctgttgcatcattattcaG
i aotNan1.NW_018509740v1   C 0 I 684
s otoGar3.GL873550           151642 82 +  18854210 ctgggaatcagttctatagaaatatacacaccagtaaacagaaatgtgtacattcatggttgtctattgcatcactattcag
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57966993 80 -  94987271 CTGAG-ATCAAATCCAAAGGAACAGACACGTCAGTAAACAGGGATGCCTATG-TTATGGCTGTTGGTTATTTTGTTATTTGA
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            79737 48 +    102524 TTGGGAATCCATGCCACGG-----------------------------TACGCGCGGGGATTGCCGCTGAAACAGTG-----
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258224 699 +  26524999 I

a score=472564.000000
s hg38.chr6_GL000254v2_alt   925225 52 +   4827813 agtagcaaggaaattgggatcaaaatcaatgcctttgagt-a-------ggtaagtga------ca
s panTro5.chr6             29888143 52 + 175400573 agtagcaaggaaattgggatcaaaatcaatgcctttgagt-a-------ggtaagtga------at
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30122451 52 + 173848474 agtagcaaggaaattgggatcaaaatcaatgcctttgagt-a-------ggtaagtga------at
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5921393 51 +   6154872 agtagcaaggaaattgggatcaaaatcaaggcctttgagt-a-------ggtaa-tga------ct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74635950 52 + 122973662 agtagcaaggaaatcgggatcaaaatcaatgcctttgagt-a-------ggtaagtga------ct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120176 52 + 172585720 agtagcgaggaaattgggatcaaagtcaatgcctttgagt-a-------ggtcagtga------ct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783255 52 - 170955103 agtagcgaggaaattgggatcaaagtcaatgtctttgagt-a-------ggtcagtga------ct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2830762 52 -   2996164 agtagcgaggaaattgggatcaaagtcaatgcctttgagt-a-------ggtcagtga------ct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580261 53 +    766320 agtagcgaggaaattgggatcaaagtcaatgcctttgattga-------ggtcagtga------ct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29036795 52 -  71996105 agtagcgaggaaattgggatcaaagtcaatgcctttgagt-a-------ggtcagtga------ct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     228735 52 +    290775 agtagagaggaaattgggatcaaagtcaatgcctttgagt-a-------ggtcagtga------ct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2675809 52 -   3067355 agtagcgaggaaattgggatcaaagtcaatgcctttgagt-a-------ggtcagtga------ct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      49737 52 +    132061 aataacaaggatattaggatcaaagtcaatgcctttgact-a-------ggtaagtga------ct
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             1763 52 -    110772 agtagcaaggaaattgggatcaaagttaatgcctttgagt-a-------gctaaggga------ct
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     269349 52 -   1771730 agtagcaaggaaattgggatcaaagttaatgcctttgagt-a-------ggtaagtga------ct
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           151724 63 +  18854210 agttagaaggaaattggaatcaa--ttaatgaccctaaat-ggcattatgctaagtaaactaagcc
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57967073 52 -  94987271 ATTGGGAAAGAAACTGGAATCAAAGTCCCTTTTCATGGCT-A-------AGAAGGTGA------CA
i mm10.chr17               C 0 I 1371
s dasNov3.JH582591            79785 45 +    102524 ------GGTAAATCCTGGAATGCAGTCAACGCTCATGCGT-A-------GG-AAGTGA------CC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258224 699 +  26524999 I
e aotNan1.NW_018509740v1     340320 684 -    457564 I

a score=497492.000000
s hg38.chr6_GL000254v2_alt   925277 59 +   4827813 gaatgaacaatgg-------tagccatactgt------------------------------------gaatattatgcaggcattaaaaagattat----tttag
s panTro5.chr6             29888195 59 + 175400573 gaatgaacaatgg-------tagccatactgt------------------------------------gaatattatgcaggcattaaaaagattat----tttag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30122503 59 + 173848474 gaatgaacaatgg-------tagccatactgt------------------------------------gaatattatgcaggcattaaaaagattat----tttAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5921444 59 +   6154872 gaatgaacaatgg-------tagccatactgt------------------------------------gaatattatgcaggcattaaaaagattat----tttag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74636002 59 + 122973662 gaataaacaatgg-------tagccatactgt------------------------------------gaatattatgcaggcattaaaaagattat----tttag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120228 59 + 172585720 gaataaacaatgg-------tagccatactgt------------------------------------gaatattatgcaggcattaaaaagattat----tttag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783307 59 - 170955103 gaataaacaatgg-------tagccatactgt------------------------------------gaatattatgcaggcattaaaaagattat----tttag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2830814 59 -   2996164 gaataaacaatgg-------tagccatactgt------------------------------------gaatattatgcaggcattaaaaagattat----tttag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580314 59 +    766320 gaataaacaacgg-------tagccatactgt------------------------------------gaatattatgcaggcattaaaaagattat----tttag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29036847 59 -  71996105 gaataaacaatgg-------tagccatactgt------------------------------------gaatatgatgcaggcattaaaaagattat----tttag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     228787 59 +    290775 gaataaacaatgg-------tagccataccgt------------------------------------gaatattatgcaggcattaaaaagattat----tttag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2675861 59 -   3067355 gaataaacaatgg-------tagccatactgt------------------------------------gaatatcatgcaggcattaaaaagattat----tttag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      49789 59 +    132061 gaatacataatga-------tattcatactgt------------------------------------gaatattatgcaggcattaaaaaGATTCT----TTTAG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             1815 59 -    110772 gaatacataataa-------tatccatactgt------------------------------------gaatattatgcaggcattaaaaaGATTCT----TTTAg
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     269401 59 -   1771730 gaatacataatga-------tatccatactgt------------------------------------gaatgttatgcaggcattaaaaaGATTCT----TTTAg
i cebCap1.NW_016107755v1   C 0 I 480
s otoGar3.GL873550           151787 97 +  18854210 agatacataaaga-------aaa--atactgcataatttatcttatatgtggaacctacaaaataaaagaaaattaaaAAAAAACTCCAAAGTTAATGTTCTTcag
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            79830 52 +    102524 ----AGGCAACGAGCGTGTCTGCCCATGCCCA------------------------------------CGA-------CAGGCCACTAGAAGGTCAT----TG---
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258224 699 +  26524999 I
e aotNan1.NW_018509740v1     340320 684 -    457564 I

a score=101262.000000
s hg38.chr6_GL000254v2_alt   925336 17 +   4827813 cactaggccagatggtt
s panTro5.chr6             29888254 17 + 175400573 cactaggccagatggtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30122562 17 + 173848474 CACTAGGCCAGATGGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5921503 17 +   6154872 cactaggccagatggtt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74636061 17 + 122973662 cacaaggccagatggtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120287 17 + 172585720 cactatgccagatggtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783366 17 - 170955103 cactatgccagatggtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2830873 17 -   2996164 cactatgccagatggtt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580373 17 +    766320 cactatgccagatggtt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29036906 17 -  71996105 cactatgccagatggtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     228846 17 +    290775 cactatgccagatggtt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2675920 17 -   3067355 cactatgccagatggtt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      49848 16 +    132061 -GCCAGGCGTGGTGGCT
i calJac3.chrUn_GL286223   C 0 I 104
s saiBol1.JH378388             1874 13 -    110772 -gccaggcatggtg---
i saiBol1.JH378388         C 0 C 0
s otoGar3.GL873550           151884 15 +  18854210 -catgggcaatatagt-
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            79882 17 +    102524 GGCTATTCCAGAGGGCC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258224 699 +  26524999 I
e aotNan1.NW_018509740v1     340320 684 -    457564 I
e cebCap1.NW_016107755v1     269460 480 -   1771730 I

a score=59218.000000
s hg38.chr6_GL000254v2_alt   925353 9 +   4827813 tggaggcct
s panTro5.chr6             29888271 9 + 175400573 tagaggcct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30122579 9 + 173848474 TAGAGGCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5921520 9 +   6154872 tggaggcct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74636078 9 + 122973662 tggaggcct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120304 9 + 172585720 tgcaggcct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783383 9 - 170955103 tgcaggcct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2830890 9 -   2996164 tgcaggcct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580390 9 +    766320 tggaggcct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29036923 9 -  71996105 tggaggcct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     228863 9 +    290775 tggaggcct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2675937 9 -   3067355 tggaggcct
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378388             1887 9 -    110772 gggatgcct
i saiBol1.JH378388         C 0 I 4549
s otoGar3.GL873550           151899 7 +  18854210 --gagaccc
i otoGar3.GL873550         C 0 I 3
s dasNov3.JH582591            79899 9 +    102524 AGGAGGAAT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258224 699 +  26524999 I
e aotNan1.NW_018509740v1     340320 684 -    457564 I
e cebCap1.NW_016107755v1     269460 480 -   1771730 I
e calJac3.chrUn_GL286223      49864 104 +    132061 I

a score=243682.000000
s hg38.chr6_GL000254v2_alt   925362 53 +   4827813 tctataaggtattattgagtgataagagcaagctgc----tgtaggat------acAAAAACA
s panTro5.chr6             29888280 53 + 175400573 tctataaggtattattgagtgataagagcaagctgc----tgtaggat------acaaaaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30122588 53 + 173848474 TCTATAAGGTATTATTGAGTGATAAGAGCAAGCTGC----TGTAGGAt------acaaaaaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5921529 53 +   6154872 tctataaggtattattgagtgataagagcaagctgc----tgtaggat------acAAAAACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74636087 59 + 122973662 tctgtaaggtattattgagtgataagagcaagctgc----tgtaggatacAAAAACAAAAACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120313 51 + 172585720 gctataaggtattgttgagtgataagagcaagctgcaaaatgTAGGat------------aca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783392 51 - 170955103 gctataaggtattgttgagtgataagagcaagctgcaaaatgTAGGAT------------ACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2830899 51 -   2996164 gctataaggtattgttgagtgataagagcaagctgcaaaatgTAGGat------------aca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580399 51 +    766320 gctataaggtattgttgagtgataagagcaagctgcagaatgTAGGat------------aca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29036932 51 -  71996105 gctataaggtcttgttgagtgataagagcaagctgcagaatgTAGGat------------aca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     228872 51 +    290775 gctataaggtattgttgagtgataagagcaagctgcaaaatgTAGGat------------aca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2675946 51 -   3067355 tctgtaaggtattgttgagtgataagagcaagctgcagaatgTAGGat------------aca
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           151909 35 +  18854210 tctcta---------tgaaaaattagcccggtttgg----tggagaat---------------
i otoGar3.GL873550         I 3 C 0
s dasNov3.JH582591            79908 56 +    102524 TCCCTGGAGTGCTG-TGGATGACAAGAGCAAGCCACAGGGACTAGGGA------ACAAAGCCA
i dasNov3.JH582591         C 0 I 553
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258224 699 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     340320 684 -    457564 I
e cebCap1.NW_016107755v1     269460 480 -   1771730 I
e calJac3.chrUn_GL286223      49864 104 +    132061 I

a score=781538.000000
s hg38.chr6_GL000254v2_alt   925415 126 +   4827813 AAAACAAAACCCTAgggcatggtggtttgcctcgcagctactcaggaggctgagacgggaggctggcttgagcccaggggtttgcagttacagtgagctatgattgcaccactgcactccaacccg
s panTro5.chr6             29888333 126 + 175400573 aaaacaaaaccctagggcatggtggtttgcctcgcagctactcaggaggctgagatgggaggctggcttgagcccagggggttgcagttacagtgagctatgattgcaacactgcactccaacccg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30122641 126 + 173848474 aaaacaaaaccctagggcatggtggtttgcctcgcagctactcaggaggctgagatgggaggctggcttgagcccagggggttgcagttacagtgagctatgattgcaacactgcactccaacccg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5921582 126 +   6154872 AAAACAAAACCCTAgggcatggtggtttgcctcacagctactcaggaggctgaggtgggaggctggcttgagcccaggggtttgcagttacagtgagctatgattgcaccactgcactccagcctg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74636146 126 + 122973662 AAAACAAAACCCTAGGGCATGGTGGTTTCCCTTGcagctactcaggaagctgaggcgggaggctgccttgagcccaggggtttgcagttacagtgagctatgattgcaccactgcactccagcctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120364 126 + 172585720 aaaacaaaaccctagggcatagtggtttgcctcgcagctactcaggacgctgaggtgggagactggcttgagcccaggggtttgcagatacagtgagctatgattgcaccactgcactccagcctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783443 126 - 170955103 AAAACAAAACCCTAGGGCATAGTGGTTTGCCtcgcagctactcaggacgctgaggtgggagactggcttgagcccaggggtttgcagatacagtgagctatgattgcaccactgcactccagcctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2830950 126 -   2996164 aaaacaaaaccctagggcatagtggtttgccttgcagctactcaggacgctgaggtgggagactggcttgagcccaggggtttgcagatacagtgagctatgattgcaccactgcactccagcctg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580450 126 +    766320 aaaacaaaaccctagggcatagtggtttgtctcgcagctactcaggaggctgaggtgggagactggcttgagcccaggggtttgcagatacagtgagctatgattgcaccactgcactccagcctg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29036983 126 -  71996105 aaaacaaatccctagggcatagtggtttgcctcgcagctactcaggaggctgaggtgggagactggcttgagcccagggatttgcagatacagtgagctatgattgcaccactgcactccagcctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     228923 126 +    290775 aaaacaaaaccctagggcatagtggtttgcctcgcagctactcaggaggctgaggtgggagactggcttgagcccaggggtttgcagatacagtgagctatgattgcaccactgcactccagcctg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2675997 126 -   3067355 aaaacaaaaccctagggcgtagtggtttgcctcacagctactcaggaggctgaggtgggagactggcttgagcctaggggtttgcagatacagtgagctatgattgcaccactgcactccagcctg
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           151944 103 +  18854210 ----------------gcct-gtagtct------cagctcctcaggaggctgaggtgggaagatcgcttgagcccaggaattcgaggctgctttgagctatgatcaggccattattctctcgcctg
i otoGar3.GL873550         C 0 I 723
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258224 699 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     340320 684 -    457564 I
e cebCap1.NW_016107755v1     269460 480 -   1771730 I
e calJac3.chrUn_GL286223      49864 104 +    132061 I

a score=202177.000000
s hg38.chr6_GL000254v2_alt   925541 35 +   4827813 ggtgacagagcaaaga-ccttcacccccactcccta
s panTro5.chr6             29888459 35 + 175400573 ggtgacagagcaaaga-ccttcacccccactcccta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30122767 35 + 173848474 ggtgacagagcaaaga-ccttcacccccactcccta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5921708 35 +   6154872 ggtaacagagcaaaga-ccttcacccccactcccta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74636272 35 + 122973662 ggtgacagagcaaaga-ccttcacccccactcccta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120490 36 + 172585720 ggtgacagagcaaagaccctTCGCCCCCACTCCCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783569 36 - 170955103 ggtgacagagcaaagacccttcgcccccactcccta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831076 36 -   2996164 ggtgacagagcaaagaccctTCGCCCCCACTCCCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580576 36 +    766320 ggtgacagagcaaagaccctTCGCCCCCACTCCCTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29037109 36 -  71996105 ggtgacagagcaaagacccttcgcccccactcccta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     229049 36 +    290775 ggtgacagagcaaagaccctTCGCCCCCACTCCCTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2676123 36 -   3067355 ggtgacagagcaaagaccctTTGCCCCCACTCCCTA
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258224 699 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           152047 723 +  18854210 I
e aotNan1.NW_018509740v1     340320 684 -    457564 I
e cebCap1.NW_016107755v1     269460 480 -   1771730 I
e calJac3.chrUn_GL286223      49864 104 +    132061 I

a score=71261.000000
s hg38.chr6_GL000254v2_alt   925576 24 +   4827813 ccc--gtctc-taaaaaaaacaaaa--ac
s panTro5.chr6             29888494 24 + 175400573 ccc--atctc-taaaaaaaacaaaa--ac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30122802 24 + 173848474 ccc--gtctc-taaaaaaaacaaaa--ac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5921743 24 +   6154872 ccc--gtctc-taaaaaaaacaaaa--ac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74636307 24 + 122973662 ccc--gtctc-taaaaaaaacaaaa--ac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120526 24 + 172585720 CCCCTGTGTC-aaaaaaaaaaacaa----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783605 24 - 170955103 cccctgtgtc-aaaaaaaaaaaaaa----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831112 24 -   2996164 CCCCTGTGTC-aaaaaaaaaaaaac----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580612 24 +    766320 CCCCTGTGTC-Taaaaaaaacaaaa----
i cerAty1.NW_012002711v1   C 0 I 2
s chlSab2.chr17            29037145 25 -  71996105 cccctgtgtctaaaaaaaaacaaaa----
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012099233v1     229085 24 +    290775 CCCCTGTGTC-aaaaaaaaaaaaaa----
i manLeu1.NW_012099233v1   C 0 I 2
s colAng1.NW_012115566v1    2676159 26 -   3067355 CCCCTGTGTC-Taaaaaaaacaaaaac--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      49968 17 +    132061 ccc--gtctt-aaaaaaaat---------
i calJac3.chrUn_GL286223   I 104 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258224 699 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           152047 723 +  18854210 I
e aotNan1.NW_018509740v1     340320 684 -    457564 I
e cebCap1.NW_016107755v1     269460 480 -   1771730 I

a score=13878.000000
s hg38.chr6_GL000254v2_alt   925600 6 +   4827813 aaaaAC
s panTro5.chr6             29888518 6 + 175400573 aaaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30122826 6 + 173848474 aaaaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5921767 6 +   6154872 aaaaAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74636331 4 + 122973662 aaaa--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120550 4 + 172585720 aaac--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783629 6 - 170955103 aaaacc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831136 6 -   2996164 aaaaac
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29037172 6 -  71996105 aaaaac
i chlSab2.chr17            I 2 I 1
s manLeu1.NW_012099233v1     229111 6 +    290775 aaaaac
i manLeu1.NW_012099233v1   I 2 C 0
s calJac3.chrUn_GL286223      49985 6 +    132061 aaaaat
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258224 699 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           152047 723 +  18854210 I
e aotNan1.NW_018509740v1     340320 684 -    457564 I
e cebCap1.NW_016107755v1     269460 480 -   1771730 I
e colAng1.NW_012115566v1    2676185 0 -   3067355 C
e cerAty1.NW_012002711v1     580636 2 +    766320 I

a score=9504.000000
s hg38.chr6_GL000254v2_alt   925606 6 +   4827813 AAAAAA
s panTro5.chr6             29888524 6 + 175400573 aaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30122832 6 + 173848474 aaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5921773 6 +   6154872 AAAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74636335 6 + 122973662 aacaaa
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29783635 6 - 170955103 aaaaaa
i macFas5.chr4             C 0 I 5
s calJac3.chrUn_GL286223      49991 6 +    132061 AAAAAG
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258224 699 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           152047 723 +  18854210 I
e aotNan1.NW_018509740v1     340320 684 -    457564 I
e cebCap1.NW_016107755v1     269460 480 -   1771730 I
e colAng1.NW_012115566v1    2676185 0 -   3067355 C
e manLeu1.NW_012099233v1     229117 0 +    290775 C
e chlSab2.chr17            29037178 1 -  71996105 I
e cerAty1.NW_012002711v1     580636 2 +    766320 I
e macNem1.NW_012011356v1    2831142 0 -   2996164 C
e rheMac8.chr4             30120554 0 + 172585720 C

a score=191497.000000
s hg38.chr6_GL000254v2_alt   925612 162 +   4827813 ACCCTTGggcccagcgccgtggctcacgcctgtaatcccagcactgtgggaggccgaggtgggcagatcacaaggtcaggagatcgagaccatcctggctaaaacggtgaaaccccgtctctact-aaaaatac--aaaaaaaaaaaaaaaattagccaggcatg
s panTro5.chr6             29888530 164 + 175400573 aCCCTTGggcccagcgccgtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcacaaggtcaggagatcgagaccatcctggctaaaacggtgaaaccctgtctctact-aaaaatacaaaaaaaaaaaaaaaaaattagccaggcgtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30122838 158 + 173848474 aCCCTTGggcccagcgccgtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcacaaggtcaggagatcgagaccatcctggctaaaacggtgaaaccctgtctctact-aaaaatac------aaaaaaaaaaaattagccaggcgtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5921779 161 +   6154872 ACCCTTGggcccagcgccgtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcacaaggtcaggagatcgagaccatcctggctaaaacggtgaaaccccgtctctact-aaaaatac---aaaaaaaaaaaaaaattagccaggcgta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74636341 161 + 122973662 aCCCTTGggcccggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcggatcataaggtcaggagatcgagaccatcctggctaaaacagtgaaaccccgtctctactaaaaaatac----aaaaaaaaaaaaaattagccaggcgtg
i nomLeu3.chr1a            C 0 C 0
s calJac3.chrUn_GL286223      49997 153 +    132061 ATTCTTGggccgggcacggtggctcactcctgtaatcccagcactttgggaggccaaggcgggtggatcatgaggtcaagagatccagaccatcctggtcaacaaggtgaaaccccgtctctact-aaaaatac-----------aaaaaatttagctgggcatg
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258224 699 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           152047 723 +  18854210 I
e aotNan1.NW_018509740v1     340320 684 -    457564 I
e cebCap1.NW_016107755v1     269460 480 -   1771730 I
e colAng1.NW_012115566v1    2676185   0 -   3067355 C
e manLeu1.NW_012099233v1     229117   0 +    290775 C
e chlSab2.chr17            29037178   1 -  71996105 I
e cerAty1.NW_012002711v1     580636   2 +    766320 I
e macNem1.NW_012011356v1    2831142   0 -   2996164 C
e macFas5.chr4             29783641   5 - 170955103 I
e rheMac8.chr4             30120554   0 + 172585720 C

a score=174818.000000
s hg38.chr6_GL000254v2_alt   925774 140 +   4827813 gtagcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaaccc-ggaagcggaggttgcagtgagccaaaatccttccactgcactccagcatggg--gg-------aca-cagcgagact-ccgtctcaa---------aaa---------
s panTro5.chr6             29888694 147 + 175400573 gtagcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaaccc-ggaagcggaggttgcagtgagccgaaatcctgccactgcactccagcatggg--gg-------aca-cagcgagact-ccatctcaaaaa--aaacaaa---------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30122996 143 + 173848474 gtagcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaaccc-ggaagcggaggttgcagtgagccgaaatcctgccactgcactccagcatggggcga-------aca-gagtgagactactgtctcaa---------aaa---------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5921940 140 +   6154872 gtagcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaaccc-ggaagcagaggttgcagtgagccgaaattctgccactgcactccagcatggg--gg-------aca-cagcgagact-ctgtctcaa---------aaa---------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74636502 149 + 122973662 gtagcacgcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcatgaacct-ggaagcggaggttgcagtgagccaaaatcccgccactgcactccagcctggg--gg-------aca-cagcgagact-ccgtctcaaaaaacaagcaac---------
i nomLeu3.chr1a            C 0 C 0
s calJac3.chrUn_GL286223      50150 142 +    132061 gtggcgcgtgcctgtaatcccagctactcaggaggctgaggcaggagaattgcctgaacccaggaggcggaggttgcgatgagccgagatcgtgccgttgcattccagtctggg--ta-------acagcagcaaaact-ccatctcaa---------aaa---------
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           152770 154 +  18854210 gttgagggcacctgtagtcccagctacttgggaggctaaggcaaaagaatcacttaagcccaagagtttgaggttgctgtgagctatgag---gccacagcattctactgaggg--GGGGGGACTAAA-TAAATAAATG-CAAGCTGCG---------GAATGTAGGGAA
i otoGar3.GL873550         I 723 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258224 699 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     340320 684 -    457564 I
e cebCap1.NW_016107755v1     269460 480 -   1771730 I
e colAng1.NW_012115566v1    2676185   0 -   3067355 C
e manLeu1.NW_012099233v1     229117   0 +    290775 C
e chlSab2.chr17            29037178   1 -  71996105 I
e cerAty1.NW_012002711v1     580636   2 +    766320 I
e macNem1.NW_012011356v1    2831142   0 -   2996164 C
e macFas5.chr4             29783641   5 - 170955103 I
e rheMac8.chr4             30120554   0 + 172585720 C

a score=25884.000000
s hg38.chr6_GL000254v2_alt   925914 6 +   4827813 -aaaaaa
s panTro5.chr6             29888841 6 + 175400573 -aaacaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30123139 6 + 173848474 -aaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922080 6 +   6154872 -aaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74636651 6 + 122973662 -aaacaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120554 6 + 172585720 -aaaaaa
i rheMac8.chr4             C 0 I 1
s macNem1.NW_012011356v1    2831142 6 -   2996164 -aaaaaa
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012002711v1     580638 6 +    766320 -aaaaaa
i cerAty1.NW_012002711v1   I 2 I 1
s manLeu1.NW_012099233v1     229117 6 +    290775 -aaaaaa
i manLeu1.NW_012099233v1   C 0 I 1
s colAng1.NW_012115566v1    2676185 6 -   3067355 -aaaaaa
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chrUn_GL286223      50292 6 +    132061 -aaaaaa
i calJac3.chrUn_GL286223   C 0 I 1
s otoGar3.GL873550           152924 6 +  18854210 TAAAAA-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258224 699 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     340320 684 -    457564 I
e cebCap1.NW_016107755v1     269460 480 -   1771730 I
e chlSab2.chr17            29037178 1 -  71996105 I
e macFas5.chr4             29783641 5 - 170955103 I

a score=8950.000000
s hg38.chr6_GL000254v2_alt   925920 5 +   4827813 aaaaa-
s panTro5.chr6             29888847 5 + 175400573 aaaaa-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30123145 5 + 173848474 aaaaa-
i panPan2.chr6             C 0 I 2565
s gorGor5.CYUI01015250v1    5922086 5 +   6154872 acaaa-
i gorGor5.CYUI01015250v1   C 0 I 12
s nomLeu3.chr1a            74636657 5 + 122973662 acaaa-
i nomLeu3.chr1a            C 0 I 5
s rheMac8.chr4             30120561 4 + 172585720 -aaaa-
i rheMac8.chr4             I 1 C 0
s macNem1.NW_012011356v1    2831149 4 -   2996164 -aaaa-
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1     580645 4 +    766320 -aaaG-
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17            29037179 4 -  71996105 -aaaa-
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012099233v1     229124 4 +    290775 -aaaa-
i manLeu1.NW_012099233v1   I 1 C 0
s colAng1.NW_012115566v1    2676192 4 -   3067355 -aaaa-
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chrUn_GL286223      50299 4 +    132061 TAAA--
i calJac3.chrUn_GL286223   I 1 C 0
s otoGar3.GL873550           152930 5 +  18854210 -CAAAT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258224 699 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     340320 684 -    457564 I
e cebCap1.NW_016107755v1     269460 480 -   1771730 I
e macFas5.chr4             29783641 5 - 170955103 I

a score=146902.000000
s hg38.chr6_GL000254v2_alt   925925 28 +   4827813 CCCTG---TATTTGTGAG--CGcacacacacac
s panTro5.chr6             29888852 28 + 175400573 CCCTG---TATTTGTGAG--cacacacacacac
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922103 22 +   6154872 CCCTG---TATTTGTGAG--------cacacac
i gorGor5.CYUI01015250v1   I 12 C 0
s nomLeu3.chr1a            74636667 28 + 122973662 CCCTG---TATTTGTGAG--CACACACACACAC
i nomLeu3.chr1a            I 5 I 666
s rheMac8.chr4             30120565 28 + 172585720 CCCTG---TATTTGTGAG--cacacacacacac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783646 28 - 170955103 CCCTG---TATTTGTGAG--cacacacacacac
i macFas5.chr4             I 5 C 0
s macNem1.NW_012011356v1    2831153 30 -   2996164 CCCTG---TATTTGTGAGcacacacacacacac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580649 26 +    766320 CCCTG---TATTTGTGAG----cacacacacac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29037183 26 -  71996105 CCCTG---TATTTGTGAG----CGcacacacac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     229128 26 +    290775 CCCTG---TATTTGTGAG----cacacacacac
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2676196 30 -   3067355 CCCTG---TATTTATGAGcacacacacacacac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      50303 29 +    132061 --CTGTATTATTTGTGAG--Tacagacacacac
i calJac3.chrUn_GL286223   C 0 I 2
s otoGar3.GL873550           152935 28 +  18854210 CCCTG---TATTTGTGAG--TATACGTACATAC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258224 699 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     340320 684 -    457564 I
e cebCap1.NW_016107755v1     269460 480 -   1771730 I
e panPan2.chr6             30123150 2565 + 173848474 I

a score=99455.000000
s hg38.chr6_GL000254v2_alt   925953 24 +   4827813 acacacacacaca--------------------cacCT------------GTGCTT
s panTro5.chr6             29888880 24 + 175400573 acacacacacaca--------------------cacCT------------GTGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125715 31 + 173848474 -------------NNNNNNNNNNNNNNNNNNNNCACCT------------GTGCTT
i panPan2.chr6             I 2565 C 0
s gorGor5.CYUI01015250v1    5922125 24 +   6154872 acacacacacaca--------------------cacCT------------GTGCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74637361 24 + 122973662 ACACACACACACA--------------------CGCCT------------GTGCTT
i nomLeu3.chr1a            I 666 C 0
s rheMac8.chr4             30120593 24 + 172585720 acacatacacaca--------------------TGCCT------------GTGCGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783674 24 - 170955103 acacatacacaca--------------------TGCCT------------GTGCGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831183 24 -   2996164 acacatacacaca--------------------TGCCT------------GTGTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580675 24 +    766320 acacatacacaca--------------------TGCCT------------GTGTGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29037209 24 -  71996105 acacatacacaca--------------------TGCCT------------GTGCGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     229154 24 +    290775 acacatacacaca--------------------TGCCT------------GTGCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2676226 24 -   3067355 acacacacacaca--------------------TGCCT------------GTGCGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      50334 36 +    132061 acacacgcacgcg--------------------tgcatgcacataTGGGCGTGCGT
i calJac3.chrUn_GL286223   I 2 C 0
s otoGar3.GL873550           152963 12 +  18854210 ------ATACATA--------------------TGTAT------------------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258224 699 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     340320 684 -    457564 I
e cebCap1.NW_016107755v1     269460 480 -   1771730 I

a score=129205.000000
s hg38.chr6_GL000254v2_alt   925977 17 +   4827813 GGTCCTAGTGAATAAGC
s panTro5.chr6             29888904 17 + 175400573 GGTCCTAGTGGATAAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125746 17 + 173848474 GGTCCTAGTGGATAAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922149 17 +   6154872 GGTCCTAGTGAATAAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74637385 17 + 122973662 GGTCCTAGTGAATAAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120617 17 + 172585720 GGTCCTAGTGAATAAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783698 17 - 170955103 GGTCCTAGTGAATAAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831207 17 -   2996164 GGTCCTAGTGAATAAGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580699 17 +    766320 GGTCCTAGTGAATAAGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29037233 17 -  71996105 GGTCCTAGTGAATAAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     229178 17 +    290775 GGTCCTAGTGAATAAGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2676250 17 -   3067355 GGTCCTAGTGAATAAGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      50370 15 +    132061 GGTCCTAGTAAATAA--
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           152975 15 +  18854210 --TCATAGTGAATAAAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26258923 17 +  26524999 GGTCCAGGTAGGTTCAC
i canFam3.chr35            I 699 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     340320 684 -    457564 I
e cebCap1.NW_016107755v1     269460 480 -   1771730 I

a score=467323.000000
s hg38.chr6_GL000254v2_alt   925994 48 +   4827813 AAGTAAATCAAATGTCTAAATATAATTATAGAA---AGG---AGATGTCACCTT
s panTro5.chr6             29888921 48 + 175400573 AAGTAAATCAAATGTCTAAATATAATTATAGAA---AGG---AGATGTCACCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125763 48 + 173848474 AAGTAAATCAAATGTCTAAATATAATTATAGAA---AGG---AGATGTCACCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922166 48 +   6154872 AAGTAAATCAAATGTCTAAATATAATTATAGAA---AGG---AGATGTCACCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74637402 48 + 122973662 GAGTAAATCAAATGTCTAAATATAATTATAGAA---AGG---AGATGTCACCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120634 48 + 172585720 AAGTAAAGCAAATGTCTAAATATAATTATAGAA---AGA---AGATATCACCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783715 48 - 170955103 AAGTAAAGCAAATGTCTAAATATAATTATAGAA---AGA---AGATATCACCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831224 48 -   2996164 AAGTAAAGCAAATGTCTAAATATAATTATAGAA---AGA---AGATATCACCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580716 48 +    766320 AAGTAAAGCAAATGTCTAAATATAATTATAGAA---AGA---AGATATCACCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29037250 48 -  71996105 AAGTAAAGCAAATGTCTAAATATAATTATAGAA---AGA---AGATATCACCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     229195 48 +    290775 AAGTAAAGCAAATGTCTAAATATAATTATAGAA---AGA---AGATACCACCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2676267 48 -   3067355 AAGTAAAGCAAATGTCTAAATATAATTCTAGAA---AGA---AGATGTCACCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      50385 45 +    132061 ------AGCAAATATCTAAATATAACTATAAAA---AGAAGGAGATTTCACCTT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     269940 51 -   1771730 AAGTAAAGCAAATGTCTAAATATAACTATAAAA---AGAATGAGATGTCACCTT
i cebCap1.NW_016107755v1   I 480 C 0
s aotNan1.NW_018509740v1     341004 51 -    457564 AAGTAAAGCAAATGTCTACATATAACTATAAAA---AGAAGGAGATGTCACCTT
i aotNan1.NW_018509740v1   I 684 C 0
s otoGar3.GL873550           152990 51 +  18854210 TAGTAAAGCAAATGTCTGAATGCAATTATAAAATATATA---AGATGACACCTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26258940 49 +  26524999 GAAGGAAGCAAATGTCCAAACATAGTTGCAGAA---AGAA--AGACGCCACCTT
i canFam3.chr35            C 0 I 93
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=233758.000000
s hg38.chr6_GL000254v2_alt   926042 25 +   4827813 TTGGCTGTACCTCCACTA-TTTCATT
s panTro5.chr6             29888969 25 + 175400573 TTGGCTGTACCTCCACTA-TTTCATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125811 25 + 173848474 TTGGCTGTACCTCCACTA-TTTCATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922214 25 +   6154872 TTGGCTGTACCTCCACTA-TTTCATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74637450 25 + 122973662 TTGGCTGCACCTCCACTA-TTTCATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120682 25 + 172585720 TTGGCTGTACCTCCACTA-TTTCATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783763 25 - 170955103 TTGGCTGTACCTCCACTA-TTTCATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831272 25 -   2996164 TTGGCTGTACCTCCACTA-TTTCATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580764 25 +    766320 TTGGCTGTACCTCCACTA-TTTCATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29037298 25 -  71996105 TTGGCTGTACCTCCACTA-TTTCATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     229243 25 +    290775 TTGGCTGTACCTCCACTA-TTTCATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2676315 25 -   3067355 TCGGCTGTACCTCCACTA-TTTCATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      50430 26 +    132061 TAGGCTGTACCTCCACTACTTTCATT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     269991 26 -   1771730 TAGGCTGTACCTCCACTGCTTTCATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     341055 26 -    457564 TAGGCTGTACCTCCACTACTTTTATT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           153041 25 +  18854210 TAGGCTTTACCTCTCCAT-TTCCATT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258989 93 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=68575.000000
s hg38.chr6_GL000254v2_alt   926067 8 +   4827813 CTGCAGAA
s panTro5.chr6             29888994 8 + 175400573 CTGTAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125836 8 + 173848474 CTGTAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922239 8 +   6154872 CTGCAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74637475 8 + 122973662 CTGCAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120707 8 + 172585720 CTGCAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783788 8 - 170955103 CTGCAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831297 8 -   2996164 CTGCAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580789 8 +    766320 CTGCAGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29037323 8 -  71996105 CTGCAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     229268 8 +    290775 CTGCAGAA
i manLeu1.NW_012099233v1   C 0 I 37
s colAng1.NW_012115566v1    2676340 8 -   3067355 CTGCAGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      50456 8 +    132061 CTGCACAA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     270017 8 -   1771730 CTGCATAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     341081 8 -    457564 CTGCACAA
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258989 93 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           153066 0 +  18854210 C

a score=16562.000000
s hg38.chr6_GL000254v2_alt   926075 2 +   4827813 TT
s panTro5.chr6             29889002 2 + 175400573 TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125844 2 + 173848474 TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922247 2 +   6154872 TT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74637483 2 + 122973662 TT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120715 2 + 172585720 tt
i rheMac8.chr4             C 0 I 27
s macFas5.chr4             29783796 2 - 170955103 tt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831305 2 -   2996164 tt
i macNem1.NW_012011356v1   C 0 I 27
s cerAty1.NW_012002711v1     580797 2 +    766320 tt
i cerAty1.NW_012002711v1   C 0 I 35
s chlSab2.chr17            29037331 2 -  71996105 TT
i chlSab2.chr17            C 0 I 49
s colAng1.NW_012115566v1    2676348 2 -   3067355 tt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      50464 2 +    132061 TT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     270025 2 -   1771730 TT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     341089 2 -    457564 tt
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258989 93 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           153066 0 +  18854210 C
e manLeu1.NW_012099233v1     229276 37 +    290775 I

a score=37781.000000
s hg38.chr6_GL000254v2_alt   926077  50 +   4827813 GCAGAATTTCTTTTTTttttcctttctt---tcttttctttttttt-------------------------------------------------------------------------------------------tttgaca
s panTro5.chr6             29889004  50 + 175400573 GCAGAATTTCTTTTTTtttctttctttt---ctttttttttttttt-------------------------------------------------------------------------------------------tttgaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125846  46 + 173848474 GCAGAATTTCTttttttttcttctttct---tttttttttttttgt-----------------------------------------------------------------------------------------------aca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922249  55 +   6154872 GCAGAATTTCTTTTTTTTTTTCtttctt---tcttttctttttttt--------------------------------------------------------------------------------------ttttttttgaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74637485 141 + 122973662 GCAGAAtttcttttctttctttctttct---ttctttctttctttctttctttctttctttctttctttcttctttttctttctttctttctttcttctttctttctttcttctttctttcttctttcttttttttttttgaga
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29783798  22 - 170955103 -------------------------------tgtttgtttgtttgt-------------------------------------------------------------------------------------------tttggca
i macFas5.chr4             C 0 I 5
s colAng1.NW_012115566v1    2676350  22 -   3067355 -------------------------------ttttttttttttttt-------------------------------------------------------------------------------------------ttgggtg
i colAng1.NW_012115566v1   C 0 I 5
s calJac3.chrUn_GL286223      50466  51 +    132061 --TCAGtttctttttcttttctttttccttttttttttttcttttt-------------------------------------------------------------------------------------------tatgaga
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     270027  48 -   1771730 --TCATTTTCTCTTTCttttctttttcc---ttttttcttcttttt-------------------------------------------------------------------------------------------tttgaga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     341091  50 -    457564 --tcattttctttttcttttctttttcc-ttttttttttctttttt-------------------------------------------------------------------------------------------tttgaga
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258989  93 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           153066   0 +  18854210 C
e manLeu1.NW_012099233v1     229276  37 +    290775 I
e chlSab2.chr17            29037333  49 -  71996105 I
e cerAty1.NW_012002711v1     580799  35 +    766320 I
e macNem1.NW_012011356v1    2831307  27 -   2996164 I
e rheMac8.chr4             30120717  27 + 172585720 I

a score=15096.000000
s hg38.chr6_GL000254v2_alt   926127 3 +   4827813 cag
s panTro5.chr6             29889054 3 + 175400573 cag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125892 3 + 173848474 cag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922304 3 +   6154872 cag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74637626 3 + 122973662 cag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120744 3 + 172585720 cga
i rheMac8.chr4             I 27 C 0
s macFas5.chr4             29783825 3 - 170955103 cga
i macFas5.chr4             I 5 C 0
s macNem1.NW_012011356v1    2831334 3 -   2996164 cga
i macNem1.NW_012011356v1   I 27 C 0
s cerAty1.NW_012002711v1     580834 3 +    766320 cga
i cerAty1.NW_012002711v1   I 35 C 0
s manLeu1.NW_012099233v1     229313 3 +    290775 cga
i manLeu1.NW_012099233v1   I 37 C 0
s colAng1.NW_012115566v1    2676377 3 -   3067355 cag
i colAng1.NW_012115566v1   I 5 C 0
s calJac3.chrUn_GL286223      50517 3 +    132061 cag
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     270075 3 -   1771730 cag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     341141 3 -    457564 cag
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258989 93 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           153066 0 +  18854210 C
e chlSab2.chr17            29037333 49 -  71996105 I

a score=892135.000000
s hg38.chr6_GL000254v2_alt   926130 111 +   4827813 agtctcgctctgtcacccaggctggagtgcaatggcgc------------------cctccgcctcctgggttcaagtgattctcctgcctcagcctcccgagtagctggga----ttacaggtgcccaccac
s panTro5.chr6             29889057 111 + 175400573 agtctcgctctgtcacccaggctggagtgcaatggcgc------------------cctctgcctcctgggttcaggtgattctcctgcctcagcctcccgagtagctggga----ttacaggtgcccaccac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125895 111 + 173848474 agtctcgctctgtcacccaggctggagtgcaatggcgc------------------cctctgcctcctgggttcaggtgattctcctgcctcagcctcccgagtagctggga----ttacaggtgcccaccac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922307 111 +   6154872 agtctcgctctgtcacccaggctggagtgcaatggtgc------------------cctccgcctcctgggttcaagtgattctcctgcctcagcctcccgagtagctggga----ttacaggtgcccaccac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74637629 111 + 122973662 agcctcgctctgtcgcctaggctggagtgcaatggcgc------------------cctccacctcctgggttcaagtgattctcctgcctcagcctcttgagtagctggga----ttacaggtgcccaccac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120747 108 + 172585720 agtcttgctctgttgcccaggctggagtgcaatggtgc------------------cct---cctcctgggttcaagtgattctcctgcctcagcctcctgagtagctggga----ttacaggtgcccaccac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783828 108 - 170955103 agtcttgctctgttgcccaggctggagtgcaatggtgc------------------cct---cctcctgggttcaagtgattctcctgcctcagcctcctgagtagctggga----ttacaggtgcccaccac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831337 108 -   2996164 agtcttgctctgttgcccaggctggagtgcaatggtgc------------------cct---cctcctgggttcaagtgattctcctgcctcagcctcctgagtagctggga----ttacaggtgcccaccac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580837 108 +    766320 agtcttgctctgttgcccaggctggagtgcaatggtac------------------ctt---cctcctgggttcaagtgattctcctgcctcagcctcctgagtagctggga----ttacaggtgcccaccac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29037382 108 -  71996105 agtcttgctctgttgcccaggctggagtgcaatggtgc------------------cct---cctcctgggttcaagtgattctcctgcctcagcctcctgagtagctggga----ttacaggtgcccaccac
i chlSab2.chr17            I 49 C 0
s manLeu1.NW_012099233v1     229316 108 +    290775 agtcttgctctgttgcccaggctggagtgcaatggtgc------------------cct---cctcctgggttcaagtgattctcctgcctcagcctcctgagtagctggga----ttacaggtgcccaccac
i manLeu1.NW_012099233v1   C 0 I 3527
s colAng1.NW_012115566v1    2676380 111 -   3067355 agtcttactctgttgcccaggctggagtgcaatggtgc------------------cctccacctcctgggttcacgtgattctcctgcctcagcctcctgagtagctggga----ttacaggtgcccaccac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      50520 133 +    132061 agtctcgctctgtcacccagcctggagtgtaatggcacgatctcagctcaccgcaaacttcgcctccccggttcagatgattatcctgcctcagcctcccaagtagctaggagcctgtaaaggcgcctggcac
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     270078 129 -   1771730 agtcttgctctgtcacccagcctggagtgtaatagcacgatctcagctcactgcaacctttgcctccccggttcagatgattatcctgcctcagtctcccaagtagctggga----ttacaggcgcctggcac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     341144 129 -    457564 agtcttgctctgtcacccagcctggagtgtaatggcacgatctcagctcaccgcaaccttcgcctccccggttcagatgattatcctgcctcagcctcccaaatagctggga----ttacaagcgcctggcgc
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258989  93 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           153066   0 +  18854210 C

a score=24302.000000
s hg38.chr6_GL000254v2_alt   926241 4 +   4827813 caca
s panTro5.chr6             29889168 4 + 175400573 caca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30126006 4 + 173848474 caca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922418 4 +   6154872 caca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74637740 4 + 122973662 caca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120855 4 + 172585720 cacg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783936 4 - 170955103 cacg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831445 4 -   2996164 cacg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580945 4 +    766320 cacg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29037490 4 -  71996105 cacg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2676491 4 -   3067355 catg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      50653 4 +    132061 catg
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     270207 4 -   1771730 catg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     341273 4 -    457564 catg
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258989 93 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           153066 0 +  18854210 C
e manLeu1.NW_012099233v1     229424 3527 +    290775 I

a score=1047755.000000
s hg38.chr6_GL000254v2_alt   926245 140 +   4827813 cccagctaatttttgtatttttagtagagacagggtttcaccaggttgtcaaggttggtctcaaactcctgacctcaggtgatccactcgcctcagactcccaaagtgctgggattacaggcatgagccatggtgcccgg
s panTro5.chr6             29889172 140 + 175400573 cccagctaatttttgtatttttagtacagacagggtttcaccaggttggcaaggctggtctcaaactcctgacctcaggtgatccactcgcctcagcctcccaaagtgctgggattacaggcatgagccatggttcccgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30126010 140 + 173848474 cccagctaatttttgtatttttagtacagacagggtttcaccaggttggcaaggctggtctcaaactcctgacctcaggtgatccactcgcctcagcctcccaaagtgctgggattacaggcatgagccatggttcccgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922422 140 +   6154872 cccagctaatttttgtatttttagtagagacagggtttcaccaggttggcaaggctggtctcaaactcctgacctcaggtgatccactcgcctcagcctcccaaagtgctgggattacaggcatgagccatgatgcccgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74637744 140 + 122973662 ctcagctaatttttgtatttttagtagatacagggtttcgccaggttggcaaggctggtctcaaactcctgacctcaggtgatccactcgcctcagcctcccaaagtgctgggattacaggcataagccatggtgcccgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120859 140 + 172585720 cccagctaatttttgtatttttagtagagacagggtttcaccaggttggcaaggctgatcttgaactcctaacctcaggtgatccactcgcctcagcctcccaaagtgctggaattacaggcgtgagccacagtgcccgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29783940 140 - 170955103 cccagctaatttttgtatttttagtagagacagggtttcaccaggttggcaaggctgatcttgaactcctaacctcaggtgatccactcgcctcagcctcccaaagtgctggaattacaggcgtgagccacagtgcccgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831449 140 -   2996164 cccagctaatttttgtatttttagtagagacagggtttcaccaggttggcaaggctgatcttgaactcctaacctcaggtgatccactcgcctcagcctcccaaagtgctggaattacaggcgtgagccacagtgcccgg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     580949 140 +    766320 cccagctaatttttgtatttttagtagagacagggtttcaccaggttggcaaggctgatcttgaactcctaacctcaggtgatccactcgcctcagcctcccaaagtgctggaattacaggcgtgagccacagtgcccag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29037494 140 -  71996105 cccagctaatttttgtatttttagtagagacagggtttcaccaggttggcaaggctgatcttgaactcctaacctcaggtgatccactcgcctcagcctcccaaagtgctggaattacaggcgtgagccacagtgcccgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     232951 140 +    290775 cccagctaatttttgtatttttagtagagacagtgtttcaccaggttggcaaggctgatcttgaactcctaacctcaggtgatccactcgcctcagcctcccaaagtgctggaattacaggcgtgagccacagtgcccgg
i manLeu1.NW_012099233v1   I 3527 C 0
s colAng1.NW_012115566v1    2676495 140 -   3067355 cccagctaatttttgtatttttagtagagacagggtttcaccagattggcaaggctgatcttgaactcctaacctcaggtgatccactcgcctcagcctcccaaagtgctggaattacacgcgtgagccacagcgtctgg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      50657 109 +    132061 cctagctgatttttctatttttagtagagacggggtttcaccacgttagccag------------------------------ccacccacctcagcctcccaaagagctcggattacaggcataag-caccgtgcctgg
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     270211 109 -   1771730 cctagctgatttttctatttttagtagagacagggtttcatcatgttggccag------------------------------ccgcctgcctcagactcccagagagctgggattacaggcataag-caccatgcctgg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     341277 109 -    457564 cctagctgatttttctatttttagtagagatggggtttcaccatgttagccag------------------------------ccgcccgcctcagcctccccaagtgctcagattacaggcataag-caacgtgcctgg
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e mm10.chr17               57967125 1371 -  94987271 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258989  93 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           153066   0 +  18854210 C

a score=89322.000000
s hg38.chr6_GL000254v2_alt   926385 8 +   4827813 ccTCAGAA
s panTro5.chr6             29889312 8 + 175400573 ccTCAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30126150 8 + 173848474 ccTCAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922562 8 +   6154872 ccTCAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74637884 8 + 122973662 ccTCAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30120999 8 + 172585720 ccTCAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784080 8 - 170955103 ccTCAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831589 8 -   2996164 ccTCAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581089 8 +    766320 ccTCAGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29037634 8 -  71996105 ccTCAGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233091 8 +    290775 ccTCAGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2676635 8 -   3067355 ccTCAGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      50766 8 +    132061 ccTCAGAA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     270320 8 -   1771730 ccTCAGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     341386 8 -    457564 ccTCAGAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           153066 8 +  18854210 CTTTAGAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57968496 8 -  94987271 CTTTATAA
i mm10.chr17               I 1371 C 0
e micMur3.chr6               173969 997 + 123392446 I
e dasNov3.JH582591            79964 553 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258989 93 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=979612.000000
s hg38.chr6_GL000254v2_alt   926393 104 +   4827813 TTTCATTTTCAACA---TGTTTTGCATG---ATGGGTGATTTTGGAG----AATATTTTTTGCT-CTATCGCAGGATGATTAAGATGTGGACAAGGTGAAGCCGATGGAGGGGGA
s panTro5.chr6             29889320 104 + 175400573 TTTCATTTTCAACA---tgttttgcatg---atgggtgattttggag----aatattttttgct-ctatcgctggatgattaagatgtggacaaggtgaagcagatggaggggga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30126158 104 + 173848474 TTTCATTTTCAACA---tgttttgcatg---atgggtgattttggag----aatattttttgct-ctatcgctggatgattaagatgtggacaaggtgaagcagatggaggggga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922570 104 +   6154872 TTTCATTTTCAACA---tgttttgcatg---atgggtgattttggag----aatattttttgct-ctatcgcaggatgattaagatgtggacaaggtgaagtggatggaggggga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74637892 103 + 122973662 -TTCATTTTCAACA---TGTTTTGCATG---ATGGGTGATTTTGGAG----AATATTTTTTGCT-CTATCGCAGGATGATTAAGATGTGGACAAGGTGAAGTGGATGGAGGGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121007 104 + 172585720 TTTCATTTGCAACA---TGTTCTGCGtg---atgggtgattttggag----attattttttgct-ctatctcaggatgattaagatgtggacaaggtgaagagaatggaggtgga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784088 104 - 170955103 TTTCATTTGCAACA---TGTTCTGCGTG---ATGGGTGATTTTGGAG----ATTATTTTTTGCT-CTATCTCAGGATGATTAAGATGTGGACAAGGTGAAGAGAATGGAGGTGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831597 104 -   2996164 TTTCATTTTCAACA---TGTTCTGCGtg---atgggtgattttggag----attattttttgct-ctatctcaggatgattaagatgtggacaaggtgaagagaatggaggtgga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581097 104 +    766320 TTTCATTTTCAACA---tgttttgcatg---atgggtgattttggag----attattttttgct-ctatctcaggatgattaagatgtggacaaggtgaagcggatggaggtgga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29037642 104 -  71996105 TTTCATTTTCAACA---TGTTTTGCGTG---ATGGGTGATTTTGGAG----ATTATTTTTTGCT-CTATCTCAGGATGATTAAGATGTGGACAAGGTGAAGCGGATGGAGGTGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233099 104 +    290775 TTTCATTTTCAACA---TGTTCTGCGtg---atgggtgattttggag----attattttttgct-ctagctcaggacgattaagatgtggacaaggtgaagcagatggaggtgga
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2676643 104 -   3067355 TTTCATTTTCAACA---tgttttgcatg---atgggtgattttggag----attattttttgct-ctatctcaggatgattaagatgtggacaaggtgaagcagatggaggtgga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      50774  94 +    132061 TTTCATTTTCAACA---TGTTTTGTGTG---ATGGATGAT-----------TTTATTTTTTGCT-GTATCTCCG---GATTAAGATGTGGACAAAGTGAAGCCAATGGAGGGGGA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     270328 108 -   1771730 TTTCATTTTCAACA---TGTTTTGTGTG---ATGGATGATTTTAGAGTTTATTTATTTTTTCCT-CTATCTCAGGTTGATTAAGATGTGGACAAGGTGAAGCTGATGGAGGGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     341394  95 -    457564 TTTCATTTTCAACA---CGTTTTGTGTG---ATGAATGAT-----------TTTATTTTTTGCT-CTA--TCAGGATGATTAAGATGTGGACAAGATGAAGCCGATGGAGGGGGA
i aotNan1.NW_018509740v1   C 0 I 333
s otoGar3.GL873550           153074  92 +  18854210 TTTCATTTTCAGTA---TGTTTTGTGTG----------------GAG----TTTATTTTTTTATGCTGTCTCATAATGATTAAGACGTGAACAAGGTGAAGTGGATGGAGGGAGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57968504 105 -  94987271 CTTTATTTTCAGTA---TGCTTTGTGTG---GTGGCTGGTTTTGGAGTTA-TTCATTATTTGTC-CTGCCTCTGAGTCGTTAAACCATGGATAGGA--AAATAGACAGAAGGAGC
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            80517 100 +    102524 TCCCTTTTCCAGCATCCTGCTTTGCGAGGCCGTGTATGAT-CTGGGG----GTTATTTTCT--T-CTGTCCCTGGCTGGTTAAA-----GACAAGGTGAAGTGCA-GGAGGCGA-
i dasNov3.JH582591         I 553 C 0
e micMur3.chr6               173969 997 + 123392446 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258989  93 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=44689.000000
s hg38.chr6_GL000254v2_alt   926497 5 +   4827813 GCTTT
s panTro5.chr6             29889424 5 + 175400573 gcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30126262 5 + 173848474 gcttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922674 5 +   6154872 gcttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74637995 5 + 122973662 GCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121111 5 + 172585720 gcttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784192 5 - 170955103 GCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831701 5 -   2996164 gcttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581201 5 +    766320 gcttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29037746 5 -  71996105 GCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233203 5 +    290775 gcttt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2676747 5 -   3067355 gcttt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      50868 5 +    132061 ACTCT
i calJac3.chrUn_GL286223   C 0 I 383
s cebCap1.NW_016107755v1     270436 5 -   1771730 ACTTT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           153166 5 +  18854210 GCTTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57968609 5 -  94987271 GTATA
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            80617 5 +    102524 GCCTG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258989 93 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     341489 333 -    457564 I

a score=95028.000000
s hg38.chr6_GL000254v2_alt   926502 8 +   4827813 GAAAGTTA
s panTro5.chr6             29889429 8 + 175400573 gaaaatta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30126267 8 + 173848474 gaaaatta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922679 8 +   6154872 gaaagtta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638000 8 + 122973662 GAAAGTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121116 8 + 172585720 gaaagtta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784197 8 - 170955103 GAAAGTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831706 8 -   2996164 gaaagtta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581206 8 +    766320 gaaagtta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29037751 8 -  71996105 GAAAGTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233208 8 +    290775 gaaagtta
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2676752 8 -   3067355 gaaagtta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      51256 8 +    132061 gaaaGTTA
i calJac3.chrUn_GL286223   I 383 C 0
s cebCap1.NW_016107755v1     270441 8 -   1771730 GAAAGTTA
i cebCap1.NW_016107755v1   C 0 I 331
s aotNan1.NW_018509740v1     341822 8 -    457564 GAAAGTTA
i aotNan1.NW_018509740v1   I 333 C 0
s otoGar3.GL873550           153171 8 +  18854210 GAAAGTAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57968614 8 -  94987271 GAAAGTTA
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            80622 8 +    102524 GGACGATA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258989 93 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=41118.000000
s hg38.chr6_GL000254v2_alt   926510 5 +   4827813 CTTGC
s panTro5.chr6             29889437 5 + 175400573 cttgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30126275 5 + 173848474 cttgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922687 5 +   6154872 cttgc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638008 5 + 122973662 ATTGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121124 5 + 172585720 attgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784205 5 - 170955103 ATTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831714 5 -   2996164 attgc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581214 5 +    766320 attgc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29037759 5 -  71996105 ATTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233216 5 +    290775 attgc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2676760 5 -   3067355 actgc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      51264 5 +    132061 ATTGT
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     341830 5 -    457564 ATTGT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           153179 5 +  18854210 ATTGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57968622 5 -  94987271 ATTGC
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            80630 5 +    102524 ACAGC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258989 93 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e cebCap1.NW_016107755v1     270449 331 -   1771730 I

a score=1444864.000000
s hg38.chr6_GL000254v2_alt   926515 142 +   4827813 TATTTAATTGAGGAACTAAACTGCTTTGAGAGCCTG-GGGGTCAGATCCT--CTGCCTTTTCCTCCTCCCCACCTGCAGTGCAAACATCAGACAATTGATCACTATTGTATCTTGGAGGTGGGAGTGA-CCATTGCAGTGCTGGGA
s panTro5.chr6             29889442 142 + 175400573 tatttaactgaggaactaaactgctttgagagcctg-ggggtcagatcct--ctgccttttcctcctccccacctgcagtgcaaacatcagacaattgatcactattgtatcttggaggtgggagtga-ccattgcagtgctggga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30126280 142 + 173848474 tatttaattgaggaactaaactgctttgagagcctg-ggggtcagatcct--ctgccttttcctcctccccacctgcagtgcaaacatcagacaattgatcactattgtatcttggaggtgggagtga-ccattgcagtgctggga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922692 142 +   6154872 tatttaattgaggaactaaactgctttgagagcctg-ggggtcagatcct--ctgccttttcctcct-cccacttgcagtgcaaacatcagacaattgatcactattgtatcttggaggtgggagtgacccattgcagtgctggga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638013 142 + 122973662 TATTTAATTGAAGAACTAAACTGCTTTGAGAGCCTG-GGGGTCAGATCCT--TTGCCTTTTCCTCCTCCCCACCTGCAGTGCAAACATCAGACAATTGATCACTATTGTATCTTGGAGGTGGGAGTGA-CCATTGCAGTGCTGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121129 142 + 172585720 tatttaattgaagaactaaactgctttgagggcctt-agtgtcagatcct--ttcccttttcctcctccccaactgcagtgcaaacatcagacaattgatcactattgtatcttgggggtgtgagtga-ccattgcactgctggga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784210 142 - 170955103 TATTTAATTGAAGAACTAAACTGCTTTGAGGGCCTT-AGTGTCAGATCCT--TTCCCTTTTCCTCCTCCCCAACTGCAGTGCAAACATCAGACAATTGATCACTATTGTATCTTGGGGGTGTGAGTGA-CCATTGCACTGCTGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831719 142 -   2996164 tatttaattgaagaactaaactgctttgagggcctt-agtgtcagatcct--ttcccttttcctcctccccaactgcagtgcaaacatcagacaattgatcactattgtatcttgggggtgtgagtga-ccattgcactgctggga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581219 142 +    766320 tatttaattgaagaactaaactgctttgagggcctc-ggtgtcagatcct--ttcccttttcctcctccccaactgcagtgcaaacatcagacaattgatcactattgtatcttgggggtgtgagtga-ccattgcactgctggga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29037764 142 -  71996105 TATTTAATTGAAGAACTAAACTGCTTTGAGGGCCTC-GGTGTCAGATCCT--TTCCCTTTTCCTCCTCCCCAGCTGCAGTGCAAACATCAGACAATTGATCACTATTGTATCTTGGGGGTGTGAGTGA-CCATTGCACTGCTGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233221 142 +    290775 tatttaattgaagaactaaactgctttgagggcctc-agtgtcagatcct--ttcccttttcctcctccccaactgcagtgcaaacatcagacaattgatcactattgtatcttgggggtgtgagtga-ccattgcactgctggga
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2676765 143 -   3067355 tatttaattgaagaactaaactgctttgagggcctcgggggtcagatcct--ttccattttcctcctccccacctgcagtgcaagcatcagacaattgatcactattgtatcttgggggtgtgagtga-ccattgcactgctggga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      51269 141 +    132061 TATTTAATTAAAGAACTAAACTGCTCTGAGGGCCTG-GGCAACAGATCCT--TTCCCCTTTCCTCCTCCCCACCTGCAGTGCAAACATCAGACAATTGATCACTTTTGTATCTTGGGGGTGAGAGTGA-GCATTCCAGTGG-GGTA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     270780 141 -   1771730 TATTTAATTAAAGAACTAAATTGCTCTGAGGGCCTG-GGCACCAGATCCT--TTCCCCTttcctcctccccacctgcagtgcaaacatcagacaattgatcacttttgtatcttgggggtgggagtga-ccattgcagtgc-ggta
i cebCap1.NW_016107755v1   I 331 C 0
s aotNan1.NW_018509740v1     341835 137 -    457564 TATTTAATTAAAGAACTAAACTGCTTTGAGGGCCTT-TG----AGATCCT--TTCCCCTTTCCTCCTCCCCACCTGCAGTGCAAACATCAGACAATTGATCACTTTTGTATCTTGGGGGTGGGAGTGA-CCATTCCAGTGC-GGTA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           153184 140 +  18854210 GATTTAACTGAAGAAAAGAAATGTTCTGAGGGCCTG-ATCCTCGGACCCT--TCCCCTGCCCCTCCTTCCCACCTGCTGTACAAACATCAGACAATCCTTCACTTTTATGTC--AGGGGATGGGGTGA-CCCTTGCAGTGCTAGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57968627 137 -  94987271 GATGCAATTGAAGAACAATAGTGTTGTGAGTG-CTG-GGCCTCTGATCTT--TTCCC--TTCCTCCTCAGCACCTGCAGTGTGAACATCAGACAATCCATCATTTCTGTATCT--GAGGTGGTGGTGA-CTGTTGTCAGGCTGAGA
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            80635 132 +    102524 ----TCCTTAAAGAGCAGACATGCCCTGAGGG-CTG-CGCCCCAGACCCCAACAGCCCATCTCCCTTCCCCGCCCGCACTGCGGACGTCAGGCACTCCATCATTTTTATATCTCAGG-------GTGA-CTGCTGCGGTGCTGGGA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26258989  93 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=1046473.000000
s hg38.chr6_GL000254v2_alt   926657 85 +   4827813 CCAGAAGATGGCATTGTATGTGGAACAACAAAGCACTATTTCTAGAGACTGCCTGCAGGGATATGGAAATAGCTTTATGTGTCTC
s panTro5.chr6             29889584 85 + 175400573 ccagaagatggcattgtatgtggaacaacaaagcactatttctagagactgcctgcagggatatggaaatagctttatGTGTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30126422 85 + 173848474 ccagaagatggcattgtatgtggaacaacaaagcactatttctagagactgcctgcagggatatggaaatagctttatGTGTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922834 85 +   6154872 ccagaagatggcactgtatgtggaacaacaaagcactatttctagagactgcctgcagggatatggaaatagctttatGTGTCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638155 85 + 122973662 CCAGAAGATGGCATTGTATGTGGAACAACAAAGCACTATTTCTAGAGACTGCCTGCAGGGATATGGAAATAGCTTTGTGTGTCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121271 85 + 172585720 ctagaagacggcattgtatgtggaacaacaaagcattatttctagagactgcctgcagggatatggaaatagctttgtGTGTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784352 85 - 170955103 CCAGAAGACGGCATTGTATGTGGAACAACAAAGCATTATTTCTAGAGACTGCCTGCAGGGATATGGAAATAGCTTTGTGTGTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831861 85 -   2996164 ccagaagacggcattgtatgtggaacaacaaagcattatttctagagactgcctgcagggatatggaaatagctttgtGTGTCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581361 85 +    766320 ccagaagacggcattgtatgtggaacaacaaagcattatttctagagactgcctgcagggatatggaaatagctttgtGTGTCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29037906 85 -  71996105 CCAGAAGACGGCATTGTATGTGGAACAACAAAGCACTATTTCTAGAGACTGCCTGTAGGGATATGGAAATAGCTTTGTGTGTCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233363 85 +    290775 ccagaagacggcattgtatgtggaacaacaaagcattatttctagagactgcctgcagggatatggaaatagctttgtGTGTCTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2676908 85 -   3067355 ccagaagacagcattgtatgtggaacaacaaagcactatttctagagactgcctgcagggatatggaaatcgctttgtGTGTCTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      51410 85 +    132061 CCAGAAGACCGCATTGTATGCAGAACAACAAAGCACTATTTCTAGAGACTGACCGCAGGGATATGGAAATGGTTGTGTGTGTCTC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     270921 85 -   1771730 ctagaagaccgcattgtatgcagaacaacaaagcactatttctagagactgacggcaggaatatggaaatagctctgtATGTCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     341972 85 -    457564 CCAGAAGACCGcattgtatgcagaacaacaaagcactatttctagagactgaccgcggggatatggaaatagcgctgtGTGTCTC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           153324 85 +  18854210 CCAGAAGGTGGCATTGTATGCAGAATAACAAAGCACTATTTCTAGGGGCAGATTGCAGGGATATGAAAATAGGTTTGTATGTCAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57968764 82 -  94987271 CCAGAAGAT-GCATTGTATGCCCAGTAACAAAGCTCTATTTCTAGAGACAGCTTGCAGGGACATGAAAATAGC--TGTGTGCCAC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26259082 76 +  26524999 CCAGAAGAC-ACATTGTGTGCAAGATAACAAAGCCCCATTTCTGGAGA--GGATGCCGGGGTGTGAAGATGGCTCTGTG------
i canFam3.chr35            I 93 C 0
s dasNov3.JH582591            80767 85 +    102524 CCAGAAAACGGCCCTGGATCTCCACCGACAAAGCACCAGGTCTAGAGGCAGACTGCGGGGATGGGAAAATAGCTTTGTGAGTCAC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               173969 997 + 123392446 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=527994.000000
s hg38.chr6_GL000254v2_alt   926742 49 +   4827813 AGAATGTTCTTCATACAGCTG-------------TTTTTATTGGGGAAATTCTACTTGCCGA-
s panTro5.chr6             29889669 49 + 175400573 AGAATGTTCTTCATACAGCTG-------------TTTTTATTGGGGAAATTCTACTTGCCGA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30126507 49 + 173848474 AGAATGTTCTTCATACAGCTG-------------TTTTTATTGGGGAAATTCTACTTGCCGA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922919 49 +   6154872 AGAATGTTCTTCATACAGCTG-------------TTCTTATTGGGGAAATTCTACTTGCTGA-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638240 49 + 122973662 AGAATGTTCTTCATACAGCTG-------------TTTTTATTGGGGAAATTCTACTTGTCGA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121356 49 + 172585720 ATAATGTTCTTCATACAGCTG-------------TTTTCATTGGGGAAATTCTACTTGTCAA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784437 49 - 170955103 ATAATGTTCTTCATACAGCTG-------------TTTTCATTGGGGAAATTCTACTTGTCAA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831946 49 -   2996164 ATAATGTTCTTCATACAGCTG-------------TTTTCATTGGGGAAATTCTACTTGTCAA-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581446 49 +    766320 ATAATGTTCTTCATACAGCTG-------------TTTTCACTGGGGAAATTCTACTTGTCAA-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29037991 49 -  71996105 ATAATGTTCTTCATACAGCTG-------------TTTTCATTGGGGAAATTCTACTTGTCAA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233448 49 +    290775 ATAATGTTCTTCATACAGCTG-------------TTTTCATTGGGGAAATTCTACTTGTCAA-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2676993 49 -   3067355 ATAATGTTCTTCATACAGCTG-------------TTTTCACTGGGGAAATTCTACTTGTCAA-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      51495 49 +    132061 AGAATGTTCTTCACACAACTG-------------TTTTTACTGGGGAATTTCTACCTGTCAA-
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     271006 46 -   1771730 AGAATG---TTCACACAATTG-------------TTTTTACTGGGGAACTTCTACCTGTCAA-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     342057 47 -    457564 AGAATGTGCTTCACACAACTG-------------TTTTTACTGGGGAACTTCTACCTGTC---
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               174966 48 + 123392446 AGAATGTTCTTCACACAGC-A-------------TTTTTATTGGGGAATTCTAACCTGCCAA-
i micMur3.chr6             I 997 C 0
s otoGar3.GL873550           153409 49 +  18854210 AAAATGTTCTTCATACAGCTA-------------TTTTTACTGGGAAATTTTTACTTGCCAA-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57968846 62 -  94987271 AGAATGTTCCTCAGACAGCTGGGTTTTTTTTTTTTTTTTCCTGGAGAATTTTTACTCACACA-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26259158 36 +  26524999 -----------CACGCAGCTG-------------CTCGCGCTGGAG--TTTGTACCTGCAGA-
i canFam3.chr35            C 0 I 156
s dasNov3.JH582591            80852 45 +    102524 AGAACG-TCTTCCTACAG-TG-------------TTTGTCTCGAGGGG-TTTTACCT--CAAG
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=549174.000000
s hg38.chr6_GL000254v2_alt   926791 54 +   4827813 AAAGTTTGATAGTGAGACCCTCTCCAGTTTGCAGATTTTTCTCCTTCCTGCTCA
s panTro5.chr6             29889718 54 + 175400573 AAAGTTTGATAGTGAGACCCTCTCCAGTTTGCAGATTTTTCTCCTTCCTGCTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30126556 54 + 173848474 AAAGTTTGATAGTGAGACCCTCTCCAGTTTGCAGATTTTTCTCCTTCCTGCTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5922968 54 +   6154872 AAAGTTTGATAGTGAGATCCTCTCCAGTTTGCAGATTTTTCTCCTTCCTGCTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638289 54 + 122973662 AAAGTTTGATAGTGAGACCCTCTCCAGTTTGCAGATTTTTCTCATTCCTGCTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121405 54 + 172585720 AAAGTTTGATAGAGAGAACCTCTCCAGTTTGCAGATTTTTCTCCTTGCTGCTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784486 54 - 170955103 AAAGTTTGATAGAGAGAACCTCTCCAGTTTGCAGATTTTTCTCCTTGCTGCTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2831995 54 -   2996164 AAAGTTTGATAGAGAGAACCTCTCCAGTTTGCAGATTTTTCTCCTTGCTGCTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581495 54 +    766320 AAAGTTTGATAGAGAGAACCTCTCCAGTTTGCAGATTTTTCTCCTTGCTGCTCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038040 54 -  71996105 AAAGTTTGATAGAGAGAACCTCTCCAGTTTGCAGATTTTTCTCCTTGCTGCTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233497 54 +    290775 AAAGTTTGATAGAGAGAACCTCTCCAGTTTGCAGATTTTTCTCCTTGCTGCTCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677042 50 -   3067355 AAAGTTTGATAGAGAGAACCTCTCCAGTTTGCAGATTTT----CTTGCTGCTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      51544 54 +    132061 AAAGTCCGACAGTGAGAGCCGCTCCAGTCTGCCCATTGTCCTCCTTTCTGCTCA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     271052 54 -   1771730 AAAGTCTGATAGTGAGAACCGCTCCAGTGTGCCAATTGTCCTCCTTTCTGCTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     342104 54 -    457564 AAAGTCTGATGGTGAGAACCGCTCCAGTCTGCCCATTGTCCTCCTTTCTGCTCA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               175014 54 + 123392446 GAGGTTTGATAGTGAAAACCGCTCCAGGTTGCAGATTTTCCTCCTTCTCGCTCA
i micMur3.chr6             C 0 I 113
s otoGar3.GL873550           153458 54 +  18854210 GAAGTTTAATAGAAAAGACCTCTCCAATTTGCAAATTTTCCTCTTTCTTGGTCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57968908 51 -  94987271 AAAAGTGGAAGGTCAGAA---CTTTAGCATACAGATTTTTTTTTTCTCTCTTCT
i mm10.chr17               C 0 I 6
s dasNov3.JH582591            80897 51 +    102524 GAAGCCTGACGG-GAGCAGCTGTCCAGCTGGCAG-CAGTCCTCAGTTCTGGTC-
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259194 156 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=515099.000000
s hg38.chr6_GL000254v2_alt   926845 56 +   4827813 ACAACTTCCTAGCTCAGTAACTGCCTCTCCCAACAAACTCCCTC---AGTTTCACCACA
s panTro5.chr6             29889772 56 + 175400573 ACAACTTCCTAGCTCAGTAACTGCCTCTCCCAACAAACTCCCTC---AGTTTCACCACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30126610 56 + 173848474 ACAACTTCCTAGCTCAGTAACTGCCTCTCCCAACAAACTCCCTC---AGTTTCACCACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923022 56 +   6154872 ACAACTTCCTAGCTCAGTAACTGCCTCTCCCAACAAACTCCCTC---AGTTTCACCACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638343 56 + 122973662 ACAACTTCCTAGCTCAGCAACTGCCTCTCTCAACAAACTCCCTC---AGTTTCACCACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121459 56 + 172585720 ACAACTTCCTAGCTCAGTAACTGCCTCTCCCAACAATCTGCCTC---AGTTTTACCACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784540 56 - 170955103 ACAACTTCCTAGCTCAGTAACTGCCTCTCCCAACAATCTGCCTC---AGTTTTACCACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832049 56 -   2996164 ACAACTTCCTAGCTCAGTAACTGCCTCTCCCAACAATCTGCCTC---AGTTTTACCACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581549 56 +    766320 ACAACTTCCTAGCTCAGTAACTGCCTCTCCCAACAAACTCCCTC---AGTTTTACCACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038094 56 -  71996105 ACAACTTCCTAGCTCAGTAACTGCCTCTCCCAACAAACTCCCTC---AGTTTCACCACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233551 56 +    290775 ACAACTTCCTAGCTCAGTAACTGCCTCTCCCAACAAACTCCCTC---AGTTTTACCACA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677092 56 -   3067355 ACAACTTCCTAGCTCAGTAACTGCCTCTCCCAACAAACTCTCTC---AGTTTCACCACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      51598 52 +    132061 ACAACTTCTTAGTGC----ACTGCCTCTCCCAACAAGCACCCTC---AGTTTCATCACA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     271106 54 -   1771730 ACAACTTCTTAGTTCACTAACTGCCTCTCCCAACAAACACCCT-----GTTTCACCACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     342158 56 -    457564 ACAACTTCTTAGTTCACTAACTGCCTCTCCCAACAAACACCCTC---AGTTTCACCACA
i aotNan1.NW_018509740v1   C 0 I 3
s otoGar3.GL873550           153512 59 +  18854210 GGATCTTCCTAGTTCAATAACTGCCTTCCCCCACACACACACTCCCGAGTCCCACCACA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57968965 53 -  94987271 GCAAATTCCCAACTC---ATCTGCCAACTCCGGTACACTCATTG---AGACCCAACAAA
i mm10.chr17               I 6 I 2
s dasNov3.JH582591            80948 39 +    102524 ----------AGCTCAC--GCCGCCTCCCCC-ACACGCCCCCTC-----CCCGCCCA--
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175068 113 + 123392446 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259194 156 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=52768.000000
s hg38.chr6_GL000254v2_alt   926901 6 +   4827813 CCAAAA
s panTro5.chr6             29889828 6 + 175400573 CCAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30126666 5 + 173848474 CC-AAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923078 6 +   6154872 CCAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638399 6 + 122973662 CCAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121515 6 + 172585720 CCAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784596 6 - 170955103 CCAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832105 6 -   2996164 CCAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581605 6 +    766320 CCAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038150 6 -  71996105 CCAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233607 6 +    290775 CCAAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677148 6 -   3067355 CCAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      51650 6 +    132061 CCAGAA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     271160 6 -   1771730 CCAGAA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           153571 6 +  18854210 CCAACA
i otoGar3.GL873550         C 0 I 6
s mm10.chr17               57969020 6 -  94987271 ACAAAT
i mm10.chr17               I 2 C 0
s dasNov3.JH582591            80987 6 +    102524 CCAAAG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175068 113 + 123392446 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259194 156 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342214 3 -    457564 I

a score=88502.000000
s hg38.chr6_GL000254v2_alt   926907 11 +   4827813 AAGGAAGACAA
s panTro5.chr6             29889834 11 + 175400573 AAGGAAGACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30126671 11 + 173848474 AAGGAAGACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923084 11 +   6154872 AAGGAAGACAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638405 11 + 122973662 AAGGAAGACAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121521 11 + 172585720 AAGGAAGACAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784602 11 - 170955103 AAGGAAGACAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832111 11 -   2996164 AAGGAAGACAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581611 11 +    766320 AAGGAAGACAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038156 11 -  71996105 AAGGAAGACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233613 11 +    290775 AAGGAAGACAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677154 11 -   3067355 AAGGAAGACAA
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     271166 11 -   1771730 AAGAAAGACAA
i cebCap1.NW_016107755v1   C 0 I 6
s otoGar3.GL873550           153583 11 +  18854210 GAAAAAGAAAA
i otoGar3.GL873550         I 6 I 9
s mm10.chr17               57969026 11 -  94987271 AAGAAAGGTGG
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            80993  6 +    102524 AAGGAG-----
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175068 113 + 123392446 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259194 156 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342214  3 -    457564 I
e calJac3.chrUn_GL286223      51656  0 +    132061 C

a score=118312.000000
s hg38.chr6_GL000254v2_alt   926918 21 +   4827813 gccggttgcg-gtggctcacac
s panTro5.chr6             29889845 21 + 175400573 gccgggtgca-gtggctcacac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30126682 21 + 173848474 gccgggtgca-gtggctcacac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923095 21 +   6154872 gccaggtgca-gtggctcacac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638416 21 + 122973662 gccgggtgca-gtggctcacac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121532 21 + 172585720 gccgggtgca-gtggctcaagc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784613 21 - 170955103 gccgggtgca-gtggctcaagc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832122 21 -   2996164 gccgggtgca-gtggctcaagc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581622 21 +    766320 gccgggtgca-gtggctcaagc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038167 21 -  71996105 gcagggtgca-gtggctcaagc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233624 21 +    290775 gtcaggtgca-gtggctcaagc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677165 21 -   3067355 gcagggtgca-gtggctcaagc
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           153603 22 +  18854210 gctgggcgcctatggctcaatc
i otoGar3.GL873550         I 9 C 0
s mm10.chr17               57969037 21 -  94987271 TGGGAGTGGG-GCAGAACACAC
i mm10.chr17               C 0 I 2
e micMur3.chr6               175068 113 + 123392446 I
e dasNov3.JH582591            80999  0 +    102524 C
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259194 156 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342214  3 -    457564 I
e cebCap1.NW_016107755v1     271177  6 -   1771730 I
e calJac3.chrUn_GL286223      51656  0 +    132061 C

a score=461747.000000
s hg38.chr6_GL000254v2_alt   926939 88 +   4827813 ctataatcccaaaactttgggaggccgaggcg---ggtggat-cacctgaggtcgggagttcgagactagcctg-----accaacatggagaaaccc
s panTro5.chr6             29889866 88 + 175400573 ctataatcccaaaactttgggaggccgaggcg---ggtggat-cacctgaggttgggagtttgagaccagcctg-----accaacatggagaaaccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30126703 88 + 173848474 ctataatcccaaaactttgggaggccgaggcg---ggtggat-cacctgaggttgggagtttgagaccagcctg-----accaacatggagaaaccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923116 88 +   6154872 ctataatcccaaaactttgggaggccgaggcg---ggtggat-cacctgaggtcgggagttcgagaccagcctg-----accaacatggagaaaccc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638437 87 + 122973662 ctgtaatcccaaaactttgggaggccgaggc----ggtggat-cacctgaggttgggagttcgagaccagcctg-----accaacatggagaaaccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121553 88 + 172585720 ctgtaatcctagcactttgggaggccgaggtg---tgtggat-cacctgaggctgggagttcaagaccagcctg-----accaacatggagaaaccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784634 88 - 170955103 ctgtaatcctagcactttgggaggccgaggtg---tgtggat-cacctgaggctgggagttcaagaccagcctg-----accaacatggagaaaccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832143 88 -   2996164 ctgtaatcctagcactttgggaggccgaggtg---tgtggat-cacctgagtctgggagttcaagaccagcctg-----accaacatggagaaaccc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581643 88 +    766320 ctgtaatcctagcactttgggaggccgaggtg---ggtggat-cacctgaggctgggagttcaagaccagcctg-----accaacatggagaaaccc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038188 88 -  71996105 ctgtaatcctagcactttgggagagcaaggtg---ggtggat-cacctgaggttgggagttcaagaccagcctg-----accaacatggagaaaccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233645 88 +    290775 ctgtaatcctagcactttgggaggccgaggtg---ggtggat-cacctgaggctgggagttcaagaccagcctg-----accaacatggagaaacgc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677186 88 -   3067355 ctgtaatcctagcactttgggaggccgaggtg---ggtggat-cacctgaggttgggagttcaagaccagcctg-----accaacatggagaaaccc
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           153625 68 +  18854210 ----------------------ggctaaggcgccagccacatacacctaaggtggcgggtttgaatccagcctgggtctgcaaacaatga-------
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            80999 20 +    102524 --------------------------------------------------GGGAGGGAG--------------G-------------GGCGAAACCC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175068 113 + 123392446 I
e mm10.chr17               57969058  2 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259194 156 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342214  3 -    457564 I
e cebCap1.NW_016107755v1     271177  6 -   1771730 I
e calJac3.chrUn_GL286223      51656  0 +    132061 C

a score=23771.000000
s hg38.chr6_GL000254v2_alt   927027 4 +   4827813 tgtc
s panTro5.chr6             29889954 4 + 175400573 tgtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30126791 4 + 173848474 tgtc
i panPan2.chr6             C 0 T 2588
s gorGor5.CYUI01015250v1    5923204 4 +   6154872 tgtc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638524 4 + 122973662 tgtc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121641 4 + 172585720 tgtc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784722 4 - 170955103 tgtc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832231 4 -   2996164 tgtc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581731 4 +    766320 tgtc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038276 4 -  71996105 tgtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233733 4 +    290775 tgtc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677274 4 -   3067355 tatc
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               175068 113 + 123392446 I
e mm10.chr17               57969058 2 -  94987271 I
e dasNov3.JH582591            81019 0 +    102524 C
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259194 156 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           153693 0 +  18854210 C
e aotNan1.NW_018509740v1     342214 3 -    457564 I
e cebCap1.NW_016107755v1     271177 6 -   1771730 I
e calJac3.chrUn_GL286223      51656 0 +    132061 C

a score=688269.000000
s hg38.chr6_GL000254v2_alt   927031 140 +   4827813 tctactaaaaacacaaaattagcctggcgtggtggcgcattcctgtaatcccagc----tgggaggctgaggcaggagaatcgcttgaaccccggaggcggaggttgcagtgagccaagatcgtgccattacactccagtctgg
s panTro5.chr6             29889958 140 + 175400573 tctactaaaaatacaaaattagcctggcgtggtggcgcattcctgtaatcccagc----tgggaggctgaggcaggagaatcgcttgaaccccagaggcggaggttgcagtgagccaagatcgtgccattgcactccagcctgg
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923208 140 +   6154872 tctactaaaaatacaaaattagcctggcatggtggcgcattcctgtaatccgagc----tgggaggctgaggcaggagaatcgcttgaaccccggaggcggaggttgcagtgagccaagatcgtgccattgcactccagcctgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638528 140 + 122973662 tctactaaaaataaaaaattagcctggcatggtggcacattcctgtaatcccagc----tgggaggctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgagccaagatcatgccattgcactccagcctgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121645 136 + 172585720 tctactaaaaatacaaaattagct--------tggcgcattcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgagccaagatcgcgccattgcactccagcctgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784726 136 - 170955103 tctactaaaaatacaaaattagct--------tggcgcattcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgagccaagatcgcgccattgcactccagcctgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832235 136 -   2996164 tctactaaaaatacaaaattagct--------tggcgcattcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgggctgagatcgcaccactgccctccagcctgg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581735 136 +    766320 tctactaaaaatacaaaattagct--------tggcgcattcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccaagatcgcgccattgcactccagcctgg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038280 136 -  71996105 tctactaaaaatacaaaattagct--------tggtgcattcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccaagatcgcgccattgcactccagccagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233737 136 +    290775 tctactaaaaatacaaaattagct--------tggcatattcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccgggaggcggaggttgcagtgagccaagatcgcgccattgcactccagcctgg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677278 136 -   3067355 tctactaaaaatacaaaattagct--------tggcacattcctgttatcccagctacttgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgtagtgagccaagatcgctccattgcactccagcctgg
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           153693 139 +  18854210 -cggctgcaaccaaaaaa-tagccgggtgttgtggcgggcgcctgtggtcccagctacttgggaggcagaggcaggagattcacttgagcccaggagttggaggttgctgtgagctgtgat---gctacagcactctacccagg
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               175068 113 + 123392446 I
e mm10.chr17               57969058   2 -  94987271 I
e dasNov3.JH582591            81019   0 +    102524 C
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259194 156 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342214   3 -    457564 I
e cebCap1.NW_016107755v1     271177   6 -   1771730 I
e calJac3.chrUn_GL286223      51656   0 +    132061 C
e panPan2.chr6             30126795 2588 + 173848474 T

a score=46930.000000
s hg38.chr6_GL000254v2_alt   927171 25 +   4827813 gcaagaaaagtggaactccatctc--a
s panTro5.chr6             29890098 27 + 175400573 gcaagaaaagtggaactccatctcaaa
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923348 26 +   6154872 gcaagaaaagtggaactccatctcaa-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638668 24 + 122973662 gcaagaaaagt-gaactctgtctca--
i nomLeu3.chr1a            C 0 I 7
s rheMac8.chr4             30121781 25 + 172585720 gcaagagaagcggaactccctctaa--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784862 25 - 170955103 gcaagagaagcggaactccctctaa--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832371 20 -   2996164 gcgacaga-----gactccgtctca--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581871 25 +    766320 gcaagagaagtggaactccctctaa--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038416 23 -  71996105 gcaagaaaagcggaattcc--caaa--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233873 25 +    290775 gcaagagaagtggaactccctctaa--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677414 24 -   3067355 gcaagaaaagcggaactccctcta---
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           153832 24 +  18854210 gggatagc-ttgaggctcagtctca--
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            81019  6 +    102524 ACAAGA---------------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175068 113 + 123392446 I
e mm10.chr17               57969058  2 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259194 156 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342214  3 -    457564 I
e cebCap1.NW_016107755v1     271177  6 -   1771730 I
e calJac3.chrUn_GL286223      51656  0 +    132061 C
e panPan2.chr6             30126795 2588 + 173848474 T

a score=6006.000000
s hg38.chr6_GL000254v2_alt   927196 1 +   4827813 a
s panTro5.chr6             29890125 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124207 1 + 173848474 a
i panPan2.chr6             T 2588 C 0
s gorGor5.CYUI01015250v1    5923374 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638699 1 + 122973662 a
i nomLeu3.chr1a            I 7 C 0
s rheMac8.chr4             30121806 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784887 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832391 1 -   2996164 a
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581896 1 +    766320 a
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038439 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233898 1 +    290775 a
i manLeu1.NW_012099233v1   C 0 C 0
s otoGar3.GL873550           153856 1 +  18854210 a
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               175068 113 + 123392446 I
e mm10.chr17               57969058 2 -  94987271 I
e dasNov3.JH582591            81025 0 +    102524 C
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259194 156 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342214 3 -    457564 I
e cebCap1.NW_016107755v1     271177 6 -   1771730 I
e calJac3.chrUn_GL286223      51656 0 +    132061 C
e colAng1.NW_012115566v1    2677438 0 -   3067355 C

a score=39867.000000
s hg38.chr6_GL000254v2_alt   927197 19 +   4827813 aaaaaaa----------------------aaaaaaaaa---------------------aac
s panTro5.chr6             29890126 19 + 175400573 aaaaaaa----------------------aaaaaaaaa---------------------aac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124208 19 + 173848474 aaaaaaa----------------------aaaaaaaaa---------------------aac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923375 19 +   6154872 aaaaaaa----------------------aaaaaaaaa---------------------aac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638700 40 + 122973662 aaaaata----------------------aaataaaaaTTACATAATACCATCAACTATAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121807 13 + 172585720 a----------------------------aaaaaaaaa---------------------aaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784888 13 - 170955103 a----------------------------aaaaaaaaa---------------------aaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832392 13 -   2996164 a----------------------------aaaaaaaaa---------------------aaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581897 41 +    766320 aaaaaacaaaaaacaaaaaacaaacaaacaaaaaaaaa---------------------aaC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038440 39 -  71996105 aaaaaaaaaaaaaaaaaaaaaaaaaaa--aaaaaaaaa---------------------aac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233899 39 +    290775 aaaaaacaaaaaacaaaaaacaaacaa--acaaaaaaA---------------------AAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677438 12 -   3067355 -----------------------------aaaaaaaaa---------------------aac
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           153857 19 +  18854210 aaaaaaa----------------------aaaaaaaga---------------------aaG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26259350 19 +  26524999 aaggaag----------------------gaaggaagg---------------------aag
i canFam3.chr35            I 156 C 0
e micMur3.chr6               175068 113 + 123392446 I
e mm10.chr17               57969058  2 -  94987271 I
e dasNov3.JH582591            81025  0 +    102524 C
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342214  3 -    457564 I
e cebCap1.NW_016107755v1     271177  6 -   1771730 I
e calJac3.chrUn_GL286223      51656  0 +    132061 C

a score=141309.000000
s hg38.chr6_GL000254v2_alt   927216 23 +   4827813 aaGGAAGACAAAAAGAAAAGC--------AG
s panTro5.chr6             29890145 23 + 175400573 aaGGAAGACAAAAAGAAAAGC--------AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124227 23 + 173848474 aaggaagacaaaaagaaaaGC--------AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923394 23 +   6154872 aaGGAAGACAAAAAGAAAAGC--------AG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638740 20 + 122973662 AAGGAAGACAAA---GAAAGC--------AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121820 31 + 172585720 aaggaagacaaaaaGAAAAGCATCTAAAGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784901 31 - 170955103 aaggaagacaaaaaGAAAAGCATCTAAAGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832405 31 -   2996164 aaggaagacaaaaaGAAAAGCATCTAAAGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581938 31 +    766320 AAGGAAGACAAAAAGAAAAGCATCTAAAGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038479 31 -  71996105 aaggaagacaaaaagaaaaGCATCTAAAGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233938 31 +    290775 AAGGAAGACAAAAAGAAAAGCATCTAAAGAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677450 23 -   3067355 aaggaagacaaaaagaaaAGC--------AT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      51656 23 +    132061 AAGAAAGACAAAATGAAGAAC--------AT
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     342217 23 -    457564 AAGAAAGACAAAATGAAAAAC--------AT
i aotNan1.NW_018509740v1   I 3 C 0
s otoGar3.GL873550           153876 14 +  18854210 -------AAAGAAAAAAATGC----------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26259369 23 +  26524999 gagggagggagggagggaagg--------aa
i canFam3.chr35            C 0 I 1
e micMur3.chr6               175068 113 + 123392446 I
e mm10.chr17               57969058  2 -  94987271 I
e dasNov3.JH582591            81025  0 +    102524 C
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I
e cebCap1.NW_016107755v1     271177  6 -   1771730 I

a score=12000.000000
s hg38.chr6_GL000254v2_alt   927239 1 +   4827813 C
s panTro5.chr6             29890168 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124250 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923417 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638760 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121851 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784932 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832436 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581969 1 +    766320 C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038510 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233969 1 +    290775 C
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677473 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      51679 1 +    132061 C
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     271183 1 -   1771730 C
i cebCap1.NW_016107755v1   I 6 C 0
s aotNan1.NW_018509740v1     342240 1 -    457564 C
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           153890 1 +  18854210 C
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               175068 113 + 123392446 I
e mm10.chr17               57969058 2 -  94987271 I
e dasNov3.JH582591            81025 0 +    102524 C
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259392 1 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=72322.000000
s hg38.chr6_GL000254v2_alt   927240 7 +   4827813 TAAAGAC
s panTro5.chr6             29890169 7 + 175400573 TAAAGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124251 7 + 173848474 TAAAGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923418 7 +   6154872 TAAAGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638761 7 + 122973662 TAAAGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121852 7 + 172585720 TAAAGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784933 7 - 170955103 TAAAGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832437 7 -   2996164 TAAAGAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581970 7 +    766320 TAAAGAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038511 7 -  71996105 TAAAGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233970 7 +    290775 TAAAGAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677474 7 -   3067355 TAAAGAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      51680 7 +    132061 TAAAGAC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     271184 7 -   1771730 TAAAGAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     342241 7 -    457564 TAAAGAC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           153891 6 +  18854210 TGAAAT-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57969060 7 -  94987271 TGAAAAC
i mm10.chr17               I 2 C 0
s canFam3.chr35            26259393 7 +  26524999 gaaAAGC
i canFam3.chr35            I 1 I 2
e micMur3.chr6               175068 113 + 123392446 I
e dasNov3.JH582591            81025 0 +    102524 C
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=675194.000000
s hg38.chr6_GL000254v2_alt   927247 51 +   4827813 TTTGCCTCAGGGGAGAAAGTTCTCTTTTGGGTTGCTATCCACATTCCAACC
s panTro5.chr6             29890176 51 + 175400573 TTTGCCTCAGGGGAGAAAGTTCTCTTTTGGGTTGCTATCCACATTCCAACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124258 51 + 173848474 TTTGCCTCAGGGGAGAAAGTTCTCTTTTGGGTTGCTATCCACATTCCAACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923425 51 +   6154872 TTTGCCTCAGGGGAGAAAGTTCTCTTTTGGGTTGCTATCGACATTCCAACC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638768 51 + 122973662 TTTGCCTCAGGGGAGAAAGTTCTCTTTTGGGTTGCTAACCACATTCCAACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121859 51 + 172585720 TTTGCCTCAGGGGAGAAAGTTGTCTTTTGGGTTGCTATCCACATTCCAACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784940 51 - 170955103 TTTGCCTCAGGGGAGAAAGTTGTCTTTTGGGTTGCTATCCACATTCCAACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832444 51 -   2996164 TTTGCCTCAGGGGAGAAAGTTGTCTTTTGGGTTGCTATCCACATTCCAACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     581977 51 +    766320 TTTGCTTCAGGGAAGAAAGTTGTCTTTTGGGTTGCTATCCACATTCCAACC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038518 51 -  71996105 TTTGCCTCAGGGGAAAAAGTTGTCTTTTGGGTTGCTATCCACATTCCAACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     233977 51 +    290775 TTTGCCTCAGGGGAGAAAGTTGTCTTTTGGGTTGCTATCCACATTCCAACC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677481 51 -   3067355 TTTGCCTCAGGGGAGAAAGTTGTCTTTTGGGTTGCTATCCACATTCCAACC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      51687 49 +    132061 --TGCCTCAGGGGGGAAAGTTGTCTTTCGGGTTGGTATCCACATTCCAACC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     271191 51 -   1771730 TTTGCCTCAGGAGGGAAAGTTGTCTTTCCAGTTGGTATCCACATTCCAACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     342248 51 -    457564 TTTGCCTCAGGGGGGAAAGTTGCCTTTCCGGTTGGTATCCACATTCCAACC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               175181 51 + 123392446 TTTGCCTCAGGGGAGAAAGTTTTCTTTTGAGTTGCTTTCCACATTCCAACC
i micMur3.chr6             I 113 I 3062
s otoGar3.GL873550           153897 51 +  18854210 GTTGCCTCCAGGGAGAACATTTTCTGTTGAACAGCTTTCCACATTCCAACC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57969067 51 -  94987271 TGTGCCTCAGGGGAGAGTGCTTTCCTTTGAGTTGGTGTCCACATTCCAAAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26259402 51 +  26524999 ACTGCCTCAGGGCACGAAGTCCTTCCCTGGGCTAACGCCCACATTCCAACC
i canFam3.chr35            I 2 C 0
s dasNov3.JH582591            81025 50 +    102524 TTTGCCTTAGGGGAGGTAGTTTATGCTCTGGTGGTT-TCCAAACTCCACTC
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=44428.000000
s hg38.chr6_GL000254v2_alt   927298 4 +   4827813 TCCT--
s panTro5.chr6             29890227 4 + 175400573 TCCT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124309 4 + 173848474 TCCT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923476 4 +   6154872 TCCT--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638819 4 + 122973662 TCCT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121910 4 + 172585720 TCCT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784991 4 - 170955103 TCCT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832495 4 -   2996164 TCCT--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     582028 4 +    766320 TCCT--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038569 4 -  71996105 TCCT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     234028 4 +    290775 TCCT--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677532 4 -   3067355 TCCT--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      51736 4 +    132061 TCCT--
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     271242 4 -   1771730 TCCT--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     342299 4 -    457564 TTCT--
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           153948 4 +  18854210 CCCT--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57969118 4 -  94987271 TCCT--
i mm10.chr17               C 0 I 428
s canFam3.chr35            26259453 4 +  26524999 CTCT--
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            81075 4 +    102524 --CTCA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=221598.000000
s hg38.chr6_GL000254v2_alt   927302 21 +   4827813 GTTCCCACCTCTTCGTCTGCA
s panTro5.chr6             29890231 21 + 175400573 GTTCCCACCTCTTCGTCTGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124313 21 + 173848474 GTTCCCACCTCTTCGTCTGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923480 21 +   6154872 GTTCCCACCTCTTCGTCTGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74638823 21 + 122973662 GTCCCCCCTTCTTAGTCTGCA
i nomLeu3.chr1a            C 0 I 1100
s rheMac8.chr4             30121914 21 + 172585720 GTTCCCACCTCTTAGTCTGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29784995 21 - 170955103 GTTCCCACCTCTTAGTCTGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832499 21 -   2996164 GTTCCCACCTCTTAGTCTGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     582032 21 +    766320 GTTCCCACCTCTTAGTCTGCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038573 21 -  71996105 GTTCCCACCTCTTAGTCTGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     234032 21 +    290775 GTTCCCACCTCTTAGTCTGCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677536 21 -   3067355 GTTCCCACCTCTTAGTCTGCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      51740 21 +    132061 CTTCCCACCTCTTAGTCTGCA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     271246 21 -   1771730 CTTCCCACCTCTTAGTCTGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     342303 21 -    457564 GTTCCCACCTCTTAGTCTGCA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           153952 21 +  18854210 CCTCCCATTTCATAGTCTGCA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26259457 21 +  26524999 CCTCCCTCCTGGGCGTCCGCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            81079 20 +    102524 CCCCCCACCT-TACATCAGCA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=31852.000000
s hg38.chr6_GL000254v2_alt   927323 10 +   4827813 TGCCT----------------AAGAA
s panTro5.chr6             29890252 10 + 175400573 TGCCT----------------AAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124334 10 + 173848474 TGCCT----------------AAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923501 10 +   6154872 TGCCT----------------AAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74639944 20 + 122973662 TGCCT----AGAATCTAAA--AGGAA
i nomLeu3.chr1a            I 1100 C 0
s rheMac8.chr4             30121935 21 + 172585720 TGCCTA---AGAATCTAAA--AAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29785016 21 - 170955103 TGCCTA---AGAATCTAAA--AAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832520 21 -   2996164 TGCCTA---AGAATCTAAA--AAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     582053 21 +    766320 TGCCTA---AGAATCTAAA--AAGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038594 21 -  71996105 TGCCTA---AGAATCTAAA--AAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     234053 21 +    290775 TGCCTA---AGAATCTAAA--AAGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677557 21 -   3067355 TGCCTA---AGAATCTAAA--AAGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      51761 10 +    132061 TGTCT----------------AAGAA
i calJac3.chrUn_GL286223   C 0 I 11
s cebCap1.NW_016107755v1     271267 10 -   1771730 TGTCT----------------AAGAA
i cebCap1.NW_016107755v1   C 0 I 11
s aotNan1.NW_018509740v1     342324 10 -    457564 TGTCT----------------AAGAA
i aotNan1.NW_018509740v1   C 0 I 148
s otoGar3.GL873550           153973 21 +  18854210 AGACTA---AGAATCTAAA--AAAAA
i otoGar3.GL873550         C 0 I 3
s canFam3.chr35            26259478 19 +  26524999 -----AACCAGAGTCTAAAGCAAG--
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            81099 10 +    102524 -----------TTTCTAGG--AG---
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=1007004.000000
s hg38.chr6_GL000254v2_alt   927333 125 +   4827813 ACTG----------------TTTTACAAGTAAATAAGGGACGCTTTG---------TCTAG--GCTTTGGAGCCAGG-A----AGTTGAG-ACAAATTTAGGAATGAGAT-GAAGTAATG-GTATTATTGCAAGTCTCAGGTGTAACTACCTCTGCTCTT
s panTro5.chr6             29890262 125 + 175400573 ACTG----------------TTTTACAAGTAAATAAGGGACGCTTTG---------TCTAG--GCTTCGGAGCCAGG-A----AGTTGAG-ACTAATTTAGGAATGAGAT-GAAGTAATG-GTATTATTGCAAGTCTCAGGTGTAACTACCTCTGCTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124344 125 + 173848474 ACTG----------------TTTTACAAGTAAATAAGGGACGCTTTG---------TCTAG--GCTTCGGAGCCAGG-A----AGTTGAG-ACTAATTTAGGAATGAGAT-GAAGTAATG-GTATTATTGCAAGTCTCAGGTGTAACTACCTCTGCTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923511 125 +   6154872 ACTG----------------TTTTACAAGTAAATAAGGGACGCTTTG---------TCTAG--GCTTCGGAGCCAGG-A----AGTTGAG-ACAAATTTAGGAATGAGAT-GAAGTAATG-GTATTATTGCAAGTCTCAGGTGTAACTACCTCTGCTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74639964 130 + 122973662 ACTGGT--------------TTTTACAAGTAAA-AAGGGACCCTTTG---------CCTAG--GCTTCGGAGCCAGGAA----AGTTGAGAACAAATTTAGGAATGAGATAAAAGTAATGTGTATTATTGCAAGTCTCAGGTGTAACTACTTCTGCTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30121956 125 + 172585720 ACTG----------------TTTTACAAGTAAACAAGGGACACTTTG---------CCTAG--GCTTGGGAGCCAGG-A----AGTTGAG-ACAAATTTAGGAATGAGAT-GAAGTAATG-GTATTATTGCAAGTCTCAGGTGTAACTACCTCTGCTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29785037 125 - 170955103 ACTG----------------TTTTACAAGTAAACAAGGGACACTTTG---------CCTAG--GCTTGGGAGCCAGG-A----AGTTGAG-ACAAATTTAGGAATGAGAT-GAAGTAATG-GTATTATTGCAAGTCTCAGGTGTAACTACCTCTGCTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832541 125 -   2996164 ACTG----------------TTTTACAAGTAAACAAGGGACACTTTG---------CCTAG--GCTTGGGAGCCAGG-A----AGTTGAG-ACAAATTTAGGAATGAGAT-GAAGTAATG-GTATTATTGCAAGTCTCAGGTGTAACTACCTCTGCTCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     582074 125 +    766320 ACTG----------------TTTTACAAGTAAACAAGGGACACTTTG---------CCTAG--GCTTGGGAGCCAGG-A----AGTTGAG-ACAAATTTAGGAATGAGAT-GAAGTAATG-GTATTATTGCAAGTCTCAGGTGTAACTACCTCTGCTCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038615 125 -  71996105 ACTG----------------TTTTACAAGTAAACAAGGGACACTTTG---------CCTAG--GCTTGGGAGCCAGG-A----AGTTGAG-ACAAATTTAGGAATGAGAT-GAAGTAATG-GTACTATTGCAAGTCTCAGGTGTAACTACTTCTGCTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     234074 125 +    290775 ACTG----------------TTTTACAAGTAAACAAGGGACACTTTG---------CCTAG--GCTTGGGAGCCAGG-A----AGTTGAG-ACAAATTTAGGAATGAGAT-GAAGTAATG-GTATTATTGCAAGTCTCAGGTGTAACTACCTCTGCTCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677578 125 -   3067355 ACTA----------------TTTTACAAGTAAACAAGGGACACTTTG---------TCTAG--GCTTGGGAGCCAGG-A----AGTTGAG-ACAAATTTAGGAATGAGAT-GAAGTAATG-GTATTATTGCAAGTCTCAGGTGTAACTACCTCTGCTCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      51782 122 +    132061 ACTG----------------TTTTACAAGTAAACAA-GGACCTGTTG---------CCTAG--GCTTGGGAGCCAGG-A----AGTTGAG-ACAAATTTAGGAATGAGAT-GAAGTAA---CTATTATTAGGAGTGTCAGGTATAATTACCGCAGCTTTT
i calJac3.chrUn_GL286223   I 11 I 420
s cebCap1.NW_016107755v1     271288 120 -   1771730 ACTG----------------TTTTACAAGTAAAGAA-GGACCTGTTG---------CCTAG----TCGGGAGCCAGG-A----AGTTGAG-ACAAATTTAGGAATGAGAT-GAAGTAA---CTACTACTGGGAGTGTCAGGTATAATCACCTCTGCTCTT
i cebCap1.NW_016107755v1   I 11 C 0
s otoGar3.GL873550           153997 126 +  18854210 AATG----------------TTTTCCAAGTTAACA---GTCACCTTGTTCCACACACCTTG--TCTGAGGAGTCAGG-A----AAC--AG-ACAAATTCAGTAAGGAAAT-GCAGTAACT-ATGTTATTGCAAGTTCCAGGTGTAATTACTTCTCTT---
i otoGar3.GL873550         I 3 C 0
s canFam3.chr35            26259497 116 +  26524999 AGTG----------------TTTTACAAGCAAACAAGGCACTGCCCA---------CTTTG--CCTGGGGAGCCAGG-AATCCAGCCGAG-TCGGAGGCTAGAATGTGG--GGACTATTG-CTGCTGCTGC------------TAATTACCTCCCCTCCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            81109 109 +    102524 -----TCTCGGGGGAGCAAGTTTTGCAAGTAAATGAGGGACCACCCA---------CCTGCCCCCTGGGGAGCCAGG-A----AGCTGAG-ACAAATTCAGGGAGGAAAT-------------------GCAAGTTTC---------TGCCCCTCCT---
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342334 148 -    457564 I

a score=302488.000000
s hg38.chr6_GL000254v2_alt   927458 33 +   4827813 TCTCTGAAGAGTTTCTAATTTCTCTT-GTTTACT
s panTro5.chr6             29890387 33 + 175400573 TCTCTGAAGAGTTTCTAATTTCTCTT-TTTTACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124469 33 + 173848474 TCTCTGAAGAGTTTCTAATTTCTCTT-TTTTACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923636 33 +   6154872 TCTCTGAAGAGTTTCTAATTTCTCTT-TTTTACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74640094 33 + 122973662 TCTCTGAAGAGTTTCTAATGTCTCTT-TTTTACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30122081 33 + 172585720 TCTCTGAAGAGTTTCTAATCTCTCTT-TTTTACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29785162 33 - 170955103 TCTCTGAAGAGTTTCTAATCTCTCTT-TTTTACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832666 33 -   2996164 TCTCTGAAGAGTTTCTAATCTCTCTT-TTTTACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     582199 33 +    766320 TCTCTGAAGAGTTTCTAATCTCTCTT-TTTTACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29038740 33 -  71996105 TCTCTGAAGAGTTTCTAATCTCTCTT-TTTTACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     234199 33 +    290775 TCTCTGAAGATTTTCTAATCTCTCTT-TTTTACT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677703 33 -   3067355 TCTCTGAAGAGTTTCTAATCTCTCTT-TTTTACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      52324 31 +    132061 TCTCTGAAGAGTTTTTAA--TCTCTT-TTTGACT
i calJac3.chrUn_GL286223   I 420 I 2
s cebCap1.NW_016107755v1     271408 33 -   1771730 TCTCTGAAGAGTTTCTAATCTCTCTT-TTTGACT
i cebCap1.NW_016107755v1   C 0 I 3
s otoGar3.GL873550           154123 28 +  18854210 TCTCAAAAGTGTTTCTGA----TCTT-TTTGAC-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26259613 31 +  26524999 TCTCT--AGAGTCTTTTATCTTTCTT-TCCAACT
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            81218 34 +    102524 CCTCTAAAGAGTTCCTGGTCTCTCTGACTTTATT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342334 148 -    457564 I

a score=14383.000000
s hg38.chr6_GL000254v2_alt   927491 8 +   4827813 --TATTTTT-T
s panTro5.chr6             29890420 8 + 175400573 --TATTTTT-T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124502 8 + 173848474 --TATTTTT-T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923669 8 +   6154872 --TATTTTT-T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74640127 7 + 122973662 --TA-TTTT-T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30122114 7 + 172585720 --TATTTTT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29785195 7 - 170955103 --TATTTTT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832699 7 -   2996164 --TATTTTT--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     582232 8 +    766320 --TATTTTTT-
i cerAty1.NW_012002711v1   C 0 I 302
s chlSab2.chr17            29038773 7 -  71996105 --TATTTTT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     234232 7 +    290775 --TATTTTT--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677736 7 -   3067355 --TATTTTT--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      52357 7 +    132061 --TTTTTTT--
i calJac3.chrUn_GL286223   I 2 C 0
s cebCap1.NW_016107755v1     271444 7 -   1771730 --TTTTTTT--
i cebCap1.NW_016107755v1   I 3 C 0
s aotNan1.NW_018509740v1     342482 7 -    457564 --ATTTTTT--
i aotNan1.NW_018509740v1   I 148 C 0
s otoGar3.GL873550           154151 6 +  18854210 ---ATTATT--
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26259645 7 +  26524999 --TACTTTT--
i canFam3.chr35            I 1 I 1
s dasNov3.JH582591            81252 8 +    102524 TTTAATTT---
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=471679.000000
s hg38.chr6_GL000254v2_alt   927499 45 +   4827813 TCTTGTCATTTT---TGTGATTTTATTACTAGTTGT---CTCTAATCCttt
s panTro5.chr6             29890428 45 + 175400573 TCTTGTCATTTT---TGTGATTTTATTACTAGTTGT---CTCTAATCCttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124510 45 + 173848474 TCTTGTCATTTT---TGTGATTTTATTACTAGTTGT---CTCTAATCCttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923677 45 +   6154872 TCTTGTCATTTT---TATGATTTTATTACTAGTTGT---CTCTAATCCttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74640134 45 + 122973662 TCTTGTCATTTT---TGTGATTTTATTACTAGTTGT---CTCTAATCCttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30122121 45 + 172585720 TCTTGTCATTTT---TGTGATTTTATTACTAGTTGT---CTCTAATCCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29785202 45 - 170955103 TCTTGTCATTTT---TGTGATTTTATTACTAGTTGT---CTCTAATCCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832706 45 -   2996164 TCTTGTCATTTT---TGTGATTTTATTACTAGTTGT---CTCTAATCCTTT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29038780 48 -  71996105 TCTTGTCATTTT---TGTGATTTTATTACTAGTTGTCTCCTCTAATCCttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     234239 45 +    290775 TCTTGTCATTTT---TGTGATTTTATTACTAGTTGT---CTCTAATCCTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677743 45 -   3067355 TCTTGTCATTTT---TGTGATTTTATTACTAGTTGT---CTCTAATCCTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      52364 45 +    132061 TCCTGTCATTTT---TGTGATTTTATTACTAGTTGT---CTCTAATCCTTT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     271451 45 -   1771730 TCCAGTCATTTT---TGTGATTTTATTACTAGTTGT---CTCTAATCCTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     342489 45 -    457564 TCTTGTCATTTT---TGTGATTTTATTATTATTTGT---CTCTAATCTTTT
i aotNan1.NW_018509740v1   C 0 I 992
s otoGar3.GL873550           154158 45 +  18854210 TTTTGTCATTAT---TGTGATTTGATTACTAGTGGT---TTCTAATCCttt
i otoGar3.GL873550         I 1 C 0
s canFam3.chr35            26259653 42 +  26524999 TCTTG---TTTT---CGTGATTTTACTACTTGCTGC---CTCTAATCCTTT
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            81260 47 +    102524 TCTTGCCTTTTTTTGTGTGATTTTTCTATTGGTTGT---CT-TAGTGTTTT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I
e cerAty1.NW_012002711v1     582240 302 +    766320 I

a score=41550.000000
s hg38.chr6_GL000254v2_alt   927544 4 +   4827813 cttt
s panTro5.chr6             29890473 4 + 175400573 cttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124555 4 + 173848474 cttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923722 4 +   6154872 cttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74640179 4 + 122973662 cttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30122166 4 + 172585720 CTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29785247 4 - 170955103 CTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832751 4 -   2996164 CTTT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29038828 4 -  71996105 cttt
i chlSab2.chr17            C 0 I 323
s manLeu1.NW_012099233v1     234284 4 +    290775 CTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677788 4 -   3067355 CTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      52409 4 +    132061 CTTT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     271496 4 -   1771730 CTTT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           154203 4 +  18854210 cttt
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26259695 4 +  26524999 CTTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            81307 4 +    102524 ATTT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e cerAty1.NW_012002711v1     582240 302 +    766320 I

a score=70726.000000
s hg38.chr6_GL000254v2_alt   927548 22 +   4827813 aaattcttcattatgaaacata
s panTro5.chr6             29890477 22 + 175400573 aaattcttcattatgaaacata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124559 22 + 173848474 aaattcttcattatgaaacata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923726 22 +   6154872 aaattcttcattatgaaaaata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74640183 22 + 122973662 aaattcttcattatgaaacata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30122170  9 + 172585720 AAAGTCTTC-------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29785251  9 - 170955103 AAAGTCTTC-------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832755  9 -   2996164 AAAGTCTTC-------------
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012099233v1     234288  9 +    290775 AAAGTCTTC-------------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677792  9 -   3067355 AAACTCTTC-------------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      52413 22 +    132061 AAACTCTTCattatgaaactta
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     271500 22 -   1771730 AAATTCTTCATTATGAAACTTA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           154207 22 +  18854210 aaactcttcattatgaaacttt
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26259699 22 +  26524999 AAACTGTTCACGATGAAGCTTA
i canFam3.chr35            C 0 I 827
s dasNov3.JH582591            81311 22 +    102524 AAACTCTTCATTATGAAATTTT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e chlSab2.chr17            29038832 323 -  71996105 I
e cerAty1.NW_012002711v1     582240 302 +    766320 I

a score=6552.000000
s hg38.chr6_GL000254v2_alt   927570 2 +   4827813 aa
s panTro5.chr6             29890499 2 + 175400573 aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124581 2 + 173848474 aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923748 2 +   6154872 aa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74640205 2 + 122973662 aa
i nomLeu3.chr1a            C 0 C 0
s calJac3.chrUn_GL286223      52435 2 +    132061 aa
i calJac3.chrUn_GL286223   C 0 I 7
s cebCap1.NW_016107755v1     271522 2 -   1771730 AA
i cebCap1.NW_016107755v1   C 0 I 7
s otoGar3.GL873550           154229 2 +  18854210 aa
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            81333 2 +    102524 AA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e colAng1.NW_012115566v1    2677801 0 -   3067355 C
e manLeu1.NW_012099233v1     234297 0 +    290775 C
e chlSab2.chr17            29038832 323 -  71996105 I
e cerAty1.NW_012002711v1     582240 302 +    766320 I
e macNem1.NW_012011356v1    2832764 0 -   2996164 C
e macFas5.chr4             29785260 0 - 170955103 C
e rheMac8.chr4             30122179 0 + 172585720 C

a score=40454.000000
s hg38.chr6_GL000254v2_alt   927572 7 +   4827813 aacaaat
s panTro5.chr6             29890501 7 + 175400573 aacaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124583 7 + 173848474 aacaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923750 7 +   6154872 aacaaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74640207 7 + 122973662 aacaaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30122179 7 + 172585720 AACAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29785260 7 - 170955103 AACAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832764 7 -   2996164 AACAAAT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29039155 7 -  71996105 AACAAAT
i chlSab2.chr17            I 323 C 0
s manLeu1.NW_012099233v1     234297 7 +    290775 AACAAAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677801 7 -   3067355 AACAAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      52444 7 +    132061 aaagcag
i calJac3.chrUn_GL286223   I 7 C 0
s cebCap1.NW_016107755v1     271531 7 -   1771730 AAAGCAg
i cebCap1.NW_016107755v1   I 7 C 0
s otoGar3.GL873550           154231 7 +  18854210 aacatat
i otoGar3.GL873550         C 0 I 706
s dasNov3.JH582591            81335 7 +    102524 AATATAG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e cerAty1.NW_012002711v1     582240 302 +    766320 I

a score=16497.000000
s hg38.chr6_GL000254v2_alt   927579 2 +   4827813 gc
s panTro5.chr6             29890508 2 + 175400573 gc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124590 2 + 173848474 gc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923757 2 +   6154872 gc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74640214 2 + 122973662 gc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30122186 2 + 172585720 gc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29785267 2 - 170955103 gc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832771 2 -   2996164 gc
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29039162 2 -  71996105 gc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     234304 2 +    290775 gc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677808 2 -   3067355 gt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      52451 2 +    132061 gc
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     271538 2 -   1771730 gc
i cebCap1.NW_016107755v1   C 0 C 0
s dasNov3.JH582591            81342 2 +    102524 GC
i dasNov3.JH582591         C 0 I 126
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           154238 706 +  18854210 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e cerAty1.NW_012002711v1     582240 302 +    766320 I

a score=12223.000000
s hg38.chr6_GL000254v2_alt   927581 2 +   4827813 ca
s panTro5.chr6             29890510 2 + 175400573 ca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124592 2 + 173848474 ca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923759 2 +   6154872 ca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74640216 2 + 122973662 ca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30122188 2 + 172585720 ca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29785269 2 - 170955103 ca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832773 2 -   2996164 ca
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29039164 2 -  71996105 ca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     234306 2 +    290775 ca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2677810 2 -   3067355 ca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      52453 2 +    132061 cg
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     271540 2 -   1771730 cg
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            81344 126 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           154238 706 +  18854210 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e cerAty1.NW_012002711v1     582240 302 +    766320 I

a score=593384.000000
s hg38.chr6_GL000254v2_alt   927583 87 +   4827813 ggcgcggcagctcacgcctgtaatcccagcactttgggaggccgaagcgggcagatcacccgaggtcaggagttcgagaccagcctg
s panTro5.chr6             29890512 87 + 175400573 ggcgcggcagctcacgcctgtaatcccagcactttgggaggccgaagcgggcagatcacctgaggtcaggagttcgagaccagcctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124594 87 + 173848474 ggcgcggcagctcacgcctgtaatcccagcactttgggaggccgaagcgggcagatcacctgaggtcaggagttcgagaccagcctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923761 87 +   6154872 ggcgcggcagctcacgcctgtaatcccagcactttgggaggccgaagcgggcagatcacctggggtcaggagttcgagaccagcctg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74640218 87 + 122973662 ggcgcggcggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacctgaggtcaggagttcgagaccagcctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30122190 86 + 172585720 gtcacggcggctcacgcctgtaatcccagcactttgggaggcagaggcaggctgatcacctgagatc-ggagttcgagaccagcctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29785271 86 - 170955103 gtcacggcggctcacgcctgtaatcccagcactttgggaggcagaggcaggctgatcacctgagatc-ggagttcgagaccagcctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2832775 86 -   2996164 gtcacggcggctcacgcctgtaatcccagcactttgggaggcagaggcaggctgatcacctgagatc-ggagttcgagaccagcctg
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29039166 86 -  71996105 ggtacggcggctcacgcctgtaattccagcactttgggaggccgaggcaggctgatcacctgagatc-ggagttcaagaccagcctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     234308 86 +    290775 ggcacggcggctcacgcctgtaatcccagcactttgggaggccgaagcaggctgatcacctgagatc-ggagttcgagaccagcctg
i manLeu1.NW_012099233v1   C 0 M 765
s colAng1.NW_012115566v1    2677812 86 -   3067355 ggcacagcggctcatgcctgtaatcccagcactttgggaggccgaggcaggccgatcacctgagatc-tgagttcgcgaccagcctg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      52455 85 +    132061 ggcgtggtggctcctggctgtaatcccagcactttgggaggccgaggcgggtggatca--tgaggtcaggagtgcaagattagtctg
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     271542 85 -   1771730 gacgtggtggctcacgcctgtaatcccagcacttcggaaggccgaggtgggtggatca--tgaggtcaggagttcaagaccagcctg
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           154944 87 +  18854210 ggcgtggtggttcacacctgtaatcctagcactctgggaggttgaggtgggcagattgcctaaactcaggagttccagaccagcctg
i otoGar3.GL873550         I 706 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            81344 126 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e cerAty1.NW_012002711v1     582240 302 +    766320 I

a score=971772.000000
s hg38.chr6_GL000254v2_alt   927670 190 +   4827813 ---------------------atcaacatgg--agaaaccccgtct------------------------------------------------------------------------------------ctact-----aaaaaatacaaaattagctaggcgtggtggcacatgccagtaatcccagctacttgagagactgaggcaggagaatcgcttgaa-ccgggaggcagaggttgc-ggtgagccaagatcgcgccattgcactccagcctgggcaacaagagcaaaactctgtctc
s panTro5.chr6             29890599 190 + 175400573 ---------------------atcaacatgg--agaaaccccgtct------------------------------------------------------------------------------------ctact-----aaaaaatacaaaattagctaggcgtggtggcacatgccagtaatcccagctacttgagagactgaggcaggagaatcgcttgaa-ccgggaggcagaggttgc-ggtgagccaagatcgcgccattgcactccagcctgggcaacaagagcaaaactccgtctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124681 190 + 173848474 ---------------------atcaacatgg--agaaaccccgtct------------------------------------------------------------------------------------ctact-----aaaaaatacaaaattagctaggcgtggtggcacatgccagtaatcccagctacttgagagactgaggcaggagaatcgcttgaa-ccgggaggcagaggttgc-ggtgagccaagattgcaccattgcactccagcctgggcaacaagagcaaaactccgtctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5923848 191 +   6154872 ---------------------atcaacatgg--agaaaccccgtct------------------------------------------------------------------------------------ctact-----aaaaaatacaaaattagctaggcgtggtggcacatgccagtaatcccagctacttgagagactgaggcaggagaatcgcttgaacccgggaggcagaggttgc-ggtgagccaagatcgcgccattgcactccagcctgggcaacaagagcaaaactccatctc
i gorGor5.CYUI01015250v1   C 0 I 1
s nomLeu3.chr1a            74640305 191 + 122973662 ---------------------atcaacatgg--agaaaccccatct------------------------------------------------------------------------------------ctact-----aaaaaatacaaaattagccaggcatggtggcgcatgccagtagtcccagctacttgagagactgaggcaggagagtcgcttgaacccgggaggcggaggttgc-ggtgagccaagatcgcgccattgcactccagcctgggcaacaagagcaaaactccatctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30122276 191 + 172585720 ---------------------atcaacatgg--agaaaccccgtct------------------------------------------------------------------------------------ctact-----aaaaactacaaaattagccaggtgtggtggcgcatgccagtaatcccagctactcgagaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgc-agtgagccaagattgtgccattgcactccagcctgggcaacaagagcaaaactccgtcta
i rheMac8.chr4             C 0 I 5
s macFas5.chr4             29785357 191 - 170955103 ---------------------atcaacatgg--agaaaccccgtct------------------------------------------------------------------------------------ctact-----aaaaactacaaaattagccaggtgtggtggcgcatgccagtaatcccagctactcgagaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgc-agtgagccaagattgtgccattgcactccagcctgggcaacaagagcaaaactccgtcta
i macFas5.chr4             C 0 I 5
s macNem1.NW_012011356v1    2832861 187 -   2996164 ---------------------atcaacatgg--agaaaccccgtct------------------------------------------------------------------------------------ctact-----aaaaactacaaaattagccaggtgtggtggcgcatgccagtaatcccagctactcgagaggctgaggcaggagaatcgcttgaacccaggaggcagagggttcaagtgagcaaaga-tgtgccattgcactccagct---gc-acaagagcaaaactccgtcta
i macNem1.NW_012011356v1   C 0 I 5
s chlSab2.chr17            29039252 191 -  71996105 ---------------------atcaacatag--agaaatctcgtct------------------------------------------------------------------------------------ctact-----aaaaactacaaaattagccaggtgtggtggcgcatgccagtaatcccagctactcgagaggctgaggcaggagaatcgcttgaactcgggaggcagaggttgc-agtgagccaagattgtgccattgcactccagcctgggcaacaagagcaaaactccgtcta
i chlSab2.chr17            C 0 I 5
s colAng1.NW_012115566v1    2677898 191 -   3067355 ---------------------atcaacatgg--agaaaccccgtct------------------------------------------------------------------------------------ctact-----aaaaactacaaaattagccgggtgtggtggcgcatgccagtaatcccagctacttgagaggctgaggcaggagaatcgcttgaacccgggacgcagaggttgc-agtgagccaagattgtgccattgcactccagcctgggcaacaagagcaaaacttcgtcta
i colAng1.NW_012115566v1   C 0 I 7
s calJac3.chrUn_GL286223      52540 174 +    132061 ---------------------gccaacatgg--tgaaatcccatct------------------------------------------------------------------------------------ctact-----aaaaatacaaaaattagcc----------------gcctgtagtcccagctactccggagactgatgcaggagaattgcttgaacccaggaggcagaagtgga-agtgatccgagatcaggccactgtactccagcctgggcaat-aaagagagactccatcgc
i calJac3.chrUn_GL286223   C 0 I 1
s cebCap1.NW_016107755v1     271627 174 -   1771730 ---------------------gccaacatgg--tgaaatcccatct------------------------------------------------------------------------------------ctact-----aaaaatacaaaaattagcc----------------acctgtaatcccagctactctggagactgatgcaggagaactgcttgaacctaggaggcagaagtgga-agtgatccgagatcaggccactgtactccagcctgggcaat-agagagagactctgtctc
i cebCap1.NW_016107755v1   C 0 I 1
s otoGar3.GL873550           155031 299 +  18854210 agcAAAAATGAGACCCTCTAAAACAAAATAGCCAGTggccccatgcctgtagctcagcgggtagggcgccagccatatataccagagctggcaggttcaaatacagcccagcccggccaaacaatgacaactactaccaaaaaaaaaaaaaaaatagccaggcattgtggtaggtgcctgtaatcccagctacttgggaggctgaggcaagagaatcgcttgagcccaagagttggagcttgc-tgtaagctgtga---cgctgcggcactctaccaagggcaac-atagtaagactctgtctc
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            81344 126 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e manLeu1.NW_012099233v1     234394 765 +    290775 M
e cerAty1.NW_012002711v1     582240 302 +    766320 I

a score=75156.000000
s hg38.chr6_GL000254v2_alt   927860 11 +   4827813 aaaaaaaaaaa
s panTro5.chr6             29890789 10 + 175400573 -aaaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124871 11 + 173848474 aaaaaaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5924040 11 +   6154872 aaaaaaaaaaa
i gorGor5.CYUI01015250v1   I 1 C 0
s nomLeu3.chr1a            74640496 10 + 122973662 -aaaaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30122472 11 + 172585720 aaaaaaaagaa
i rheMac8.chr4             I 5 C 0
s macFas5.chr4             29785553 11 - 170955103 aaaaaaaagaa
i macFas5.chr4             I 5 C 0
s macNem1.NW_012011356v1    2833053 11 -   2996164 aaaaaaaagaa
i macNem1.NW_012011356v1   I 5 C 0
s cerAty1.NW_012002711v1     582542 11 +    766320 aaaaaaaaaga
i cerAty1.NW_012002711v1   I 302 C 0
s chlSab2.chr17            29039448 11 -  71996105 aaagaaaagaa
i chlSab2.chr17            I 5 C 0
s colAng1.NW_012115566v1    2678096 11 -   3067355 aagaaaaagaa
i colAng1.NW_012115566v1   I 7 C 0
s calJac3.chrUn_GL286223      52715 11 +    132061 aaaaaaaaaaa
i calJac3.chrUn_GL286223   I 1 C 0
s cebCap1.NW_016107755v1     271802 11 -   1771730 aaaaaaaaaaa
i cebCap1.NW_016107755v1   I 1 C 0
s otoGar3.GL873550           155330 11 +  18854210 aaaaaaataaa
i otoGar3.GL873550         C 0 I 217
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            81344 126 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e manLeu1.NW_012099233v1     234394 765 +    290775 M

a score=1986216.000000
s hg38.chr6_GL000254v2_alt   927871 334 +   4827813 accacatacaaac---cagagataatattataatgagcctccaagtgcctaccaccttgctg-cagcacttgtcaatccagggaccacccacctcaccggctccccactcattaccaccctcccctactcaattactgaggtaaatcctaggcagcatgatcatttc-t----------tttttttctt----tttattta----ttttgagacaggatctgtct-ctgtcaccca-ggctggagtgtagtggcat-atctctgctcactgcagcctctgcctcccgggcagaagccatcct-cccacctcagcctacatagtagctgggaccacaggcacacaccaccacacactgctaa
s panTro5.chr6             29890799 330 + 175400573 accacatacaaac---cagagataatattataatgagcctccaagtgcctaccaccttgctg-cagcacttgtcaacccagggaccacccacttcaccggctccccactcattaccaccctcccctactcaattactgaggtaaatcctaggcagcatgatcatttc-t----------tttttttctt----tttattta----ttttgagagaggatctgtct-ctgtcaccca-----ggagtgtagtggcat-atctctgctcactgcagcctctgcctcccgggcagaagccatcct-cccacctcagcctacataatagctgggaccacaggcacacaccaccacacactgctaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124882 330 + 173848474 accacatacaaac---cagagataatattataatgagcctccaagtgcctaccaccttgctg-cagcacttgtcaacccagggaccacccacttcaccggctccccactcattaccaccctcccctactcaattactgaggtaaatcctaggcagcatgatcatttc-t----------tttttttctt----tttattta----ttttgagagaggatctgtct-ctgtcaccca-----ggagtgtagtggcat-atctctgctcactgcagcctctgcctcccgggcagaagccatcct-cccacctcagcctacatagtagctgggaccacaggcacacaccaccacacactgctaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5924051 334 +   6154872 accacatacaaac---cagagataatattataatgagcctccaagtgcctaccaccttgctg-cagcacttgtcaatccagggaccacccacttcaccggctccccactcattaccaccctcccctactcaattactgaggtaaatcctaggcagcatgatcatttc-t----------tttttttctt----tttattta----ttttgagacaggatctgtct-ctgtcaccca-ggctggagtgtagtggcat-atctctgctcactgcagcctctgcctcctgggcagaagccatcct-cccacctcagcctacgtagtagctgggaccacaggcacacaccaccacacactgctaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74640506 335 + 122973662 accacatacaaac---cagagataatcttataatgagcctccaagtgcctaccaccttgctg-cagcacttgtcaatccagggaccacccacttcaccggctccccactcattaccaccctcccctactcaattactgaggtaaatcctaggcagcatgatcatttc-t----------tttttttctt----tttattta----ttttgagacaggatctgtct-ctgccaccca-ggctggagtgtagtggcatgatctctgctcactgcagcctctgcctcccgggcagaagccatcct-cccacctcagcctacatagtagctgggaccacaggcacacaccaccacacgctgctaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30122483 330 + 172585720 aaaaCatacaaaa---cagagagaacattataatgagcctccaagtgcctaccaccttgctg-cagcacttgtcaatcc-gggaccacccacttctctagctccccaatcatgaccaccctaccctactcaattactgaggtaaatcgtaggcagcatgatcatttc-t----------gttttttatt--------ttta----ttgtgagacaggatctgtgt-ctgtcaccca-ggctggagtgtagtggcatgatctctgctcactgcagcctctgcctcccaggcagaagccatcct-cccacctcagccttcatagtagctgggaccacaggcaaacagcaccacacgctgctaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29785564 331 - 170955103 aaaacatacaaaa---cagagagaacattataatgagcctccaagtgcctaccaccttgctg-cagcacttgtcaatccagggaccacccacttcaccagctccccactcattaccaccctcccctactcaattactgaggtaaatcctaggcagcatgatcatttc-t----------cttttttctt--------ttta----ttttgagacaggatctgtct-ctgtcaccca-ggctggagtgtagtggcatgatctctgctcactgcagcctctgcctcccaggcagaagccatcct-cccacctcagccttcatagtagctgggaccacaggcaaacagcaccacacgctgctaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2833064 331 -   2996164 aaaaCatacaaaa---cagagagaacattataatgagcctccaagtgcctaccaccttgctg-cagcacttgtcaatccagggaccacccacttcaccagctccccactcattaccaccctcccctactcaattactgaggtaaatcctaggcagcatgatcatttc-t----------cttttttctt--------ttta----ttttgagacaggatctgtct-ctgtcaccca-ggctggagtgtagtggcatgatctctgctcactgcagcctctgcctcccaggcagaagccatcct-cccacctcagccttcatagtagctgggaccacaggcaaacagcaccacacgctgctaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     582553 329 +    766320 aaaaCATACAAAG---CAGAGAGAACATTATAATGAGCCTCCAAGTGCCTACAACCTTGCTGCCAGCACTTGTCAATCCAGGGGCCACCCACTTCACGAGCTCCCCACTC-TTACCACCCTCCCCTACTCAATTACTGAGGGAAATCCTGAGCAGCATGATCAtttc-t----------cttttttctt--------ttta----ttttgagacaggatctgtctcctgtcacccacggctggagtgtagtggcatgatctctgctcactgcagccttg--ctcccaggcagaagccatcctccccacctcagccttca-agtagctgggaccaca-gcaaaca-ccccacacgctgctaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29039459 331 -  71996105 aaaacatacaaag---cagagagaacattataatgagcctccaagtgcctaccaccttgctg-cagcacttgtcaatccagggaccacccactccaccagctccccactcattaccaccctcccctactcaattactgaggtaaatcctaggcagcatcatcatttc-t----------cttttttctt--------ctta----ttttgagacaggatctgtct-ctgtcaccca-ggctggagtgtagtggcatgatctctgctcactgcagcctttgcctcccaggcagaagccatcct-cccacctcagcctgcacagtagctgggaccacaggcaaacaccaccacacgctgctaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2678107 332 -   3067355 aaaaCatacaaag---cagagagaatattataatgagcctccaagcacctaccaccttgctg-cagcacttgtcaatccagggaccacccacttcaccggctccccactcattaccaccctcccctactcaattactgaggtaaatcctaggcagcatgatcatttctt----------tttttttttt--------ttta----ttttgagacaggatctgtct-ctgtcaccca-ggctggagtgtagtggcatgatctctgctcactgcagcctctgcctcccaggcagaagccatcct-cccacctcagccttcatagtagctgggaccacaggcaaacactaccacacattgctaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      52726 347 +    132061 aaaaaaaaaaaaatgccaagtagaatgttataatgagcctccaagtgcctgcaatcttgctg-cagcacttgtcaat--agggaccacccacttcactggctccccactcattaccaccctttcctgctcaattactgaggtaaatcctaggcagcataatcatttg-ttgttttt---gttttttctttttatttattta----ttttgagacagggtctggct-ctgtcaccca-ggctgaggcatagtggcatgatctccgctcactgtggcctctgcctccccggcccaaaccctcct-cccacctcagcctatcaagtagccgggaccgcagggacatactacctcaggctgctaa
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     271813 344 -   1771730 aaaaTG----------CAAGTGgaatattatagccagcctctaagtgcctgccaccttgctg-cagcacttgtcaat--agggaccatccacttcactggctccccactcattactaccctcccctattcaattactgaggtaaatcctaggcagcatgatcatttg-ttttatttctatttttttctttttatttatttatttcttttgagacagggtctggct-gtgtcaccca-ggctgccgcgtagtagcatgatctctgctcactgtagcctctgcctcccgggttcaagccatccc-gccacctgagcctaccaagtagctgggaccacaggcacacactacctcaggctgctaa
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            81344 126 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           155341 217 +  18854210 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e manLeu1.NW_012099233v1     234394 765 +    290775 M

a score=913088.000000
s hg38.chr6_GL000254v2_alt   928205 141 +   4827813 tgt---------tttgtattttttgtagagactgggttttaccatgttgatcaggctggtctcaaactcctaggctcaagcaatcct-----cccacctcgg--cctcccaaagtgctagaattacaggcgcgagccactgc-acccagcgaagaaca
s panTro5.chr6             29891129 141 + 175400573 tgt---------tttgtattttttgtagagactgggttttaccatgttgatcaggctggtctcaaactcctaggctcaagcaatcct-----cccacctcgg--cctcccaaagtgctagaattacaggcgtgagccactgc-acccagcgaagaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125212 141 + 173848474 tgt---------tttgtattttttgtagagactgggttttaccatgttgatcaggctggtctcaaactcctaggctcaagcaatcct-----cccacctcgg--cctcccaaagtgctagaattacaggcgcgagccactgc-acccagcGAAGAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5924385 141 +   6154872 tgt---------tttgtattttttgtagagactgggttttaccatgttgatcaggctggtctcaaactcctaggctcaagcaatcct-----cccacctcgg--cctcccaaagtgctagaattacaggcgtgagccactgc-acccagcgaagaaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74640841 141 + 122973662 tgt---------tttgtattttttgtagagactgagttttgccatgttgctcaggctggtctcaaactcctaggctcaagcgatcct-----cccacctcag--cctcccaaagtgctagaattacaggcacaagccactgc-acccagcgaagaaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30122813 141 + 172585720 tgt---------tttgtaatttttgtagagactgagttttgccatgttgctcaggctggtctcaaactcctaggcacaagcaatcct-----cccaccttgg--cctcccaaagtgctagaattacaggcgtgagccactgc-acccagcaaagaaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29785895 141 - 170955103 tgt---------tttgtaatttttgtagagactgagttttgccatgttgctcaggctggtctcaaactcctaggcacaagcaatcct-----cccaccttgg--cctcccaaagtgctagaattacaggcgtgagccactgc-acccagcaaagaaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2833395 141 -   2996164 tgt---------tttgtaatttttgtagagactgagttttgccatgttgctcaggctggtctcaaactcctaggcacaagcaatcct-----cccaccttgg--cctcccaaagtgctagaattacaggcgtgagccactgc-acccagcaaagaaca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     582882 141 +    766320 tgt---------tttgtaa-ttttgtaaagactgggttttgccatgttgctcaggctggtctcaaactcctaggcacaagcaatcct-----cccaccttgg--cctcccaaagtgctagaattacaggcgtgagccactgcaacccagcAAAGAACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29039790 150 -  71996105 tgtaattagctatttgtaatttttgtagagactgggttttgccatgttgctcaggctgatctcaaactcctaggcacaagcagtcct-----cccaccttgg--cctcccaaagtgctagaattacaggcgtgagccactgc-acccagcaaagaaca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2678439 141 -   3067355 tgt---------tttgtattttttgtagagaccgggttttgccatgttgctcaggcgggtctcaaactcctaggcacaagcaatcct-----cccatcttgg--cctcccaaagtgctagaattacaggcgtgagccactgc-acccagcaaggaaca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      53073 141 +    132061 tgt---------tctgtattttttgtagagacttggttttgccgtgttgcttagggtggtctcaaactcctaggctcaagcagttct-----cccacctcag--cctcccaaagtgctagaattacaagcgtgagccactgc-acccagccaagaaca
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     272157 141 -   1771730 tgt---------tttgtattttttgtagagactcggttttgccatgtggctcagggtggtctcaaacgcctaggctcaagcagttct-----cctacctcag--cctcccaaattgctagaattacaggtgtgagccactgc-aaccagccaagaaca
i cebCap1.NW_016107755v1   C 0 I 142
s otoGar3.GL873550           155558 108 +  18854210 TGC---------TTTGAACTTCTT-TAGAAAATAA--------------------------TTAAATTAACAATCTTTAAAAATTTTCGCAGCACACCTAAGATCCTCCCATAGCACAATA-------GCGTG------CAC-ACTGGTTGAAAATCA
i otoGar3.GL873550         I 217 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            81344 126 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e manLeu1.NW_012099233v1     234394 765 +    290775 M

a score=36342.000000
s hg38.chr6_GL000254v2_alt   928346 9 +   4827813 ctttttaaa
s panTro5.chr6             29891270 9 + 175400573 ctttttaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125353 9 + 173848474 CTTTTTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5924526 9 +   6154872 ctttttaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74640982 9 + 122973662 ttttttaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30122954 9 + 172585720 ctttttaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29786036 9 - 170955103 ctttttaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2833536 9 -   2996164 ctttttaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     583023 9 +    766320 CTTTTTAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29039940 9 -  71996105 cttttttaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2678580 9 -   3067355 ctttttaaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      53214 5 +    132061 --gttta--
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           155666 6 +  18854210 CTCCTT---
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            81344 126 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e cebCap1.NW_016107755v1     272298 142 -   1771730 I
e manLeu1.NW_012099233v1     234394 765 +    290775 M

a score=112.000000
s hg38.chr6_GL000254v2_alt   928355 1 +   4827813 a
s panTro5.chr6             29891279 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125362 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5924535 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74640991 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30122963 1 + 172585720 c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29786045 1 - 170955103 c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2833545 1 -   2996164 c
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     583032 1 +    766320 A
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29039949 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2678589 1 -   3067355 a
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            81344 126 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           155672 0 +  18854210 C
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e cebCap1.NW_016107755v1     272298 142 -   1771730 I
e calJac3.chrUn_GL286223      53219 0 +    132061 C
e manLeu1.NW_012099233v1     234394 765 +    290775 M

a score=971801.000000
s hg38.chr6_GL000254v2_alt   928356 178 +   4827813 aataaataggccgggcgcggtggctca--cacc-tgtaatcccag-------tactttgggagcccaaggagggcgaatcatgaggtcaagagattgagaccatcctagctaacat-ggtgaaaccccatttctactacaaatacaaaaacaaaattagcctggcgt-ggtggcaggcgcctgtagtccc
s panTro5.chr6             29891280 178 + 175400573 aataaataggccgggcgcggtggctca--cacc-tgtaatcccag-------tactttgggagcccaaggagggcgaatcatgaggtcaagagatcgagaccatcctagctaacat-ggtgaaaccccatttctactaaaaatacaaaaacaaaattagcctggcat-ggtggcaggcgcctgtagtccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125363 178 + 173848474 AATAAATAggccgggcgcggtggctca--cacc-tgtaatcccag-------tactttgggagcccaaggagggcgaatcatgaggtcaagagatcgagaccatcctagctaacat-ggtgaaaccccatttctactaaaaatacaaaaacaaaattagcctggcat-ggtggcaggcgcctgtagtccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5924536 178 +   6154872 aataaataggccgggtgcggtggctca--tgcc-tgtaatcccag-------tactttgggagcccaaggagggcgaatcatgaggtcaagagatcgagaccatgctagctaacat-ggtgaaaccccatttctactaaaaatacaaaaacaaaattagcctggcat-ggtggcaggcgcctgtagtccc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74640992 178 + 122973662 aataaataggccagatgcggtggctca--cgcc-tgtaatcctag-------tactttgggaggccgaggagggcgaatcatgaggtccagagatcgagaccatcctagctaacat-ggtgaaaccccatttctactaaaaatacaaaaacaaaattagccgggctt-ggtggcaggtgcctatagtccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30122964 178 + 172585720 aataaataggccgggcacgagggctca--tgcc-tgcaatcccag-------tactttgggaggctgaggagggcgaatcacgaggtcaagagatggagaccatcctagctaatgt-ggtgaaaccctgtttctactaaaaatacaaaaacaaaattagccgggcat-ggtggcaggcgcctgtagtccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29786046 178 - 170955103 aataaataggccgggcacaagggctca--tgcc-tgcaatcccag-------tactttgggaggctgaggagggcgaatcacgaggtcaagagatggagaccatcctagctaatgt-ggtgaaaccctgtttctactaaaaatacaaaaacaaaattagccgggcgt-ggtggcaggcgcctgtagtccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2833546 178 -   2996164 aataaataggccgggcacgagggctca--tgcc-tgcaatcccag-------tactttgggaggctgaggagggcgaatcacgaggtcaagagatggagaccatcctagctaatgt-ggtgaaaccctgtttctactaaaaatacaaaaacaaaattagccgggcgt-ggtggcaggcgcctgtagtccc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     583033 180 +    766320 AATAAATAggccgggcacgagggctca--cgctgtgcaatcccag-------tactttgggaggctgaggagggcgaatcacgaggtcaagagatggagaccatcctagctaatgtgggtgaaaacctgtttctactaaaaatac-aaagcaaaattagccgggcatgggtggcaggcacctgtagtccc
i cerAty1.NW_012002711v1   C 0 I 15
s chlSab2.chr17            29039950 178 -  71996105 aataaataggccgggcacgagggctca--cgcc-tgcaatcccag-------tactttgggaggctgaggagggtgaatcacgaggtcaagagatggagaccatcctagctaatgt-gttgaaaccctgtttctactaaaaatacaaaaacaaaattagccgggcgt-ggtggcgggcgcctgtagtccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     235159 178 +    290775 AATAAATAggccgggcacgagggctca--cgct-tgcaatcccag-------tactttgggaggctgaggagggcgaatcacgaggtcaagagatggagaccatcctagctaatgt-ggtgaaaccctgtttctactgaaaatacaaaaacaaaattagccgggcgt-ggtggcaggcgcctgtagtccc
i manLeu1.NW_012099233v1   M 765 C 0
s colAng1.NW_012115566v1    2678590 178 -   3067355 aataaataggccaggcgcgaggactca--cgcc-tgcaatcccag-------tacttttagaggctgaggagggcgaatcacgaggtcaagagatcgagaccatcctagctaatgt-ggtgaaaccctgtttctactaaaaatataaaaacaaaattagctgggtgt-ggtggcaggtgcctgtagtccc
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           155672 147 +  18854210 ------Tggctcggcgcctatagctcaaccggc-taaggcgccagccacgtacacctaaggtggc----gggttcgaatccccagccc---------ggacccgccaaacaacaat-ga-------cagctgcaacca-------------aaaaatagcc-ggtgt-tgtggcgggcgcctgtggtccc
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            81344 126 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e cebCap1.NW_016107755v1     272298 142 -   1771730 I
e calJac3.chrUn_GL286223      53219   0 +    132061 C

a score=59246.000000
s hg38.chr6_GL000254v2_alt   928534 13 +   4827813 agctacttgggag
s panTro5.chr6             29891458 13 + 175400573 agctacttgggag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125541 13 + 173848474 agctacttgggag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5924714 13 +   6154872 agctacttgggag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74641170 13 + 122973662 agttacttgggag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30123142 13 + 172585720 agtcactcagaag
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29786224 13 - 170955103 agtcactcagaag
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2833724 13 -   2996164 agtcactcagaag
i macNem1.NW_012011356v1   C 0 I 1
s chlSab2.chr17            29040128 13 -  71996105 agtcactcagaag
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012099233v1     235337 13 +    290775 agtcactcagaag
i manLeu1.NW_012099233v1   C 0 I 1
s colAng1.NW_012115566v1    2678768 13 -   3067355 agtcactcagaag
i colAng1.NW_012115566v1   C 0 I 1
s otoGar3.GL873550           155819 13 +  18854210 agctacttgggag
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            81344 126 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e cebCap1.NW_016107755v1     272298 142 -   1771730 I
e calJac3.chrUn_GL286223      53219  0 +    132061 C
e cerAty1.NW_012002711v1     583213 15 +    766320 I

a score=558920.000000
s hg38.chr6_GL000254v2_alt   928547 96 +   4827813 -ctgaggcaggagaatggagtgaacccgggaggcggagcttgcagtgagctgag-atcatgccactgcactccagcctggggcaacagagtgagactc
s panTro5.chr6             29891471 96 + 175400573 -ctgaggcaggagaatggagtgaacccgggaggcggagcttgcagtgagctgag-atcatgccactgcactccagcctggggcaacagagtgagactc
i panTro5.chr6             C 0 I 10
s panPan2.chr6             30125554 96 + 173848474 -ctgaggcaggagaatggagtgaacccaggaggcggagcttgcagtgagctgag-atcatgccactgcactccagcctggggcaacagagtgagactc
i panPan2.chr6             C 0 I 6
s gorGor5.CYUI01015250v1    5924727 96 +   6154872 -ctgaggcaggagaatggagtgaacccgggaggcggagcttgcagtgagctgag-atcatgccactgcactccagcctggggcaacagagtgagactc
i gorGor5.CYUI01015250v1   C 0 I 8
s nomLeu3.chr1a            74641183 95 + 122973662 -ctgaggcaggagaatggagtgaactcgggaggcggagcttgcagtgagctgag-atcgtgccactgcactccagcct-gggcaacagagtgagaccc
i nomLeu3.chr1a            C 0 I 6
s rheMac8.chr4             30123156 95 + 172585720 -ctgaggtaggagaatggagtgaacccgggaggcagagcttgcagtgagctgag-atcgcatcaccacactccagcct-gggcaacagagtgagactc
i rheMac8.chr4             I 1 I 6
s macFas5.chr4             29786238 95 - 170955103 -ctgaggtaggagaatggagtgaacccgggaggcagagcttgcagtgagctgag-atcgcatcaccacactccagcct-gggcaacagagtgagactc
i macFas5.chr4             I 1 I 6
s macNem1.NW_012011356v1    2833738 95 -   2996164 -ctgaggtaggagaatggagtgaacccgggaggcagagcttgcagtgagctgag-atcgcatcaccacactccagcct-gggcaacagagtgagactc
i macNem1.NW_012011356v1   I 1 I 7
s cerAty1.NW_012002711v1     583228 96 +    766320 -ctgaggtaggagaatggagtgaacccgggaggcagagcttgcagtgagctgagaatcgcatcaccacactccagcct-gggcaacagagtgagactc
i cerAty1.NW_012002711v1   I 15 I 45
s chlSab2.chr17            29040142 95 -  71996105 -ctgaggtaggagaatggagtgaacccgggaggcagagcttgcagtgagctgag-atcgcatcaccacactccagcct-gggtaacagagtgagactc
i chlSab2.chr17            I 1 I 4
s manLeu1.NW_012099233v1     235351 84 +    290775 -ctgaggtaggagaatggagtgaacccgggaggca-----------gagctgag-atcgcatcaccacactccagcct-gggcaacagagtgagactc
i manLeu1.NW_012099233v1   I 1 I 55
s colAng1.NW_012115566v1    2678782 95 -   3067355 -ctgagatgggagaatggagtgaacccgggaggcagagcttgccgtgagctgag-atcgcgtcaccacactccagcct-gggcaacagagtgagactc
i colAng1.NW_012115566v1   I 1 I 5
s otoGar3.GL873550           155832 93 +  18854210 gtggaggcaggagactcgcttgagcccaggagttggaggttgctgtgagctgca-at---gccatggcactctgccca-gggggacagcttgaggctc
i otoGar3.GL873550         C 0 I 6
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            81344 126 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e cebCap1.NW_016107755v1     272298 142 -   1771730 I
e calJac3.chrUn_GL286223      53219  0 +    132061 C

a score=63012.000000
s hg38.chr6_GL000254v2_alt   928643 15 +   4827813 aaaaaaaaaaaaaaa
s panTro5.chr6             29891577 15 + 175400573 aaaaaaaaaaaaaaa
i panTro5.chr6             I 10 C 0
s panPan2.chr6             30125656 13 + 173848474 --aaaaaaaaaaaaa
i panPan2.chr6             I 6 C 0
s gorGor5.CYUI01015250v1    5924831 15 +   6154872 aaaaaaaaaaaaaaa
i gorGor5.CYUI01015250v1   I 8 C 0
s nomLeu3.chr1a            74641284 15 + 122973662 aaaaaaaaaaaaaag
i nomLeu3.chr1a            I 6 I 15
s rheMac8.chr4             30123257 15 + 172585720 aaaaaaaaaaaaaaa
i rheMac8.chr4             I 6 C 0
s macFas5.chr4             29786339 12 - 170955103 ---aaaaaaaaaaaa
i macFas5.chr4             I 6 C 0
s macNem1.NW_012011356v1    2833840 15 -   2996164 aaaaaaaaaaaaaaa
i macNem1.NW_012011356v1   I 7 C 0
s chlSab2.chr17            29040241 15 -  71996105 tcaaaaaaaaaaaaa
i chlSab2.chr17            I 4 C 0
s colAng1.NW_012115566v1    2678882 15 -   3067355 caaaaaaaaaaaaaa
i colAng1.NW_012115566v1   I 5 C 0
s otoGar3.GL873550           155931 15 +  18854210 aaaaaaaaaaaaaaa
i otoGar3.GL873550         I 6 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            81344 126 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e cebCap1.NW_016107755v1     272298 142 -   1771730 I
e calJac3.chrUn_GL286223      53219  0 +    132061 C
e manLeu1.NW_012099233v1     235435 55 +    290775 I
e cerAty1.NW_012002711v1     583324 45 +    766320 I

a score=-5284.000000
s hg38.chr6_GL000254v2_alt   928658 16 +   4827813 aaaagccccccctccc
s panTro5.chr6             29891592 16 + 175400573 aaaagccccccctccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125669 16 + 173848474 aaaaGCCCCCCCTCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5924846 16 +   6154872 aaaaagcccccctccc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30123272  4 + 172585720 caca------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29786351  4 - 170955103 aaca------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2833855  4 -   2996164 aaaa------------
i macNem1.NW_012011356v1   C 0 C 0
s colAng1.NW_012115566v1    2678897  3 -   3067355 caa-------------
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           155946  4 +  18854210 agaa------------
i otoGar3.GL873550         C 0 I 1
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            81344 126 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e cebCap1.NW_016107755v1     272298 142 -   1771730 I
e calJac3.chrUn_GL286223      53219  0 +    132061 C
e manLeu1.NW_012099233v1     235435 55 +    290775 I
e chlSab2.chr17            29040256  0 -  71996105 C
e cerAty1.NW_012002711v1     583324 45 +    766320 I
e nomLeu3.chr1a            74641299 15 + 122973662 I

a score=36215.000000
s hg38.chr6_GL000254v2_alt   928674 10 +   4827813 cacacacaat
s panTro5.chr6             29891608 10 + 175400573 cacacacaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125685 10 + 173848474 CACACACaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5924862 10 +   6154872 cacacacaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74641314 10 + 122973662 cacacacaat
i nomLeu3.chr1a            I 15 C 0
s rheMac8.chr4             30123276 10 + 172585720 cacacaaaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29786355 10 - 170955103 cacacaaaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2833859 10 -   2996164 cacacaaaat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     583369  7 +    766320 --cac-aaat
i cerAty1.NW_012002711v1   I 45 C 0
s chlSab2.chr17            29040256  9 -  71996105 -acacaaaat
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2678900 10 -   3067355 cacacaaaat
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            81344 126 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           155950  1 +  18854210 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e cebCap1.NW_016107755v1     272298 142 -   1771730 I
e calJac3.chrUn_GL286223      53219  0 +    132061 C
e manLeu1.NW_012099233v1     235435 55 +    290775 I

a score=18293.000000
s hg38.chr6_GL000254v2_alt   928684 4 +   4827813 aata
s panTro5.chr6             29891618 4 + 175400573 aata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125695 4 + 173848474 aata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5924872 4 +   6154872 aata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74641324 4 + 122973662 aata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30123286 4 + 172585720 aata
i rheMac8.chr4             C 0 I 4
s macFas5.chr4             29786365 4 - 170955103 aata
i macFas5.chr4             C 0 I 4
s macNem1.NW_012011356v1    2833869 4 -   2996164 aata
i macNem1.NW_012011356v1   C 0 I 4
s cerAty1.NW_012002711v1     583376 3 +    766320 aat-
i cerAty1.NW_012002711v1   C 0 I 4
s chlSab2.chr17            29040265 4 -  71996105 aata
i chlSab2.chr17            C 0 I 4
s colAng1.NW_012115566v1    2678910 4 -   3067355 aata
i colAng1.NW_012115566v1   C 0 I 4
s dasNov3.JH582591            81470 4 +    102524 aata
i dasNov3.JH582591         I 126 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           155950 1 +  18854210 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e cebCap1.NW_016107755v1     272298 142 -   1771730 I
e calJac3.chrUn_GL286223      53219 0 +    132061 C
e manLeu1.NW_012099233v1     235435 55 +    290775 I

a score=5634.000000
s hg38.chr6_GL000254v2_alt   928688 1 +   4827813 t
s panTro5.chr6             29891622 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125699 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5924876 1 +   6154872 t
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74641328 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30123294 1 + 172585720 t
i rheMac8.chr4             I 4 C 0
s macFas5.chr4             29786373 1 - 170955103 t
i macFas5.chr4             I 4 C 0
s macNem1.NW_012011356v1    2833877 1 -   2996164 t
i macNem1.NW_012011356v1   I 4 C 0
s cerAty1.NW_012002711v1     583383 1 +    766320 t
i cerAty1.NW_012002711v1   I 4 C 0
s chlSab2.chr17            29040273 1 -  71996105 t
i chlSab2.chr17            I 4 C 0
s manLeu1.NW_012099233v1     235490 1 +    290775 t
i manLeu1.NW_012099233v1   I 55 C 0
s colAng1.NW_012115566v1    2678918 1 -   3067355 t
i colAng1.NW_012115566v1   I 4 C 0
s dasNov3.JH582591            81474 1 +    102524 c
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           155950 1 +  18854210 I
e aotNan1.NW_018509740v1     342534 992 -    457564 I
e cebCap1.NW_016107755v1     272298 142 -   1771730 I
e calJac3.chrUn_GL286223      53219 0 +    132061 C

a score=29218.000000
s hg38.chr6_GL000254v2_alt   928689 4 +   4827813 aaat
s panTro5.chr6             29891623 4 + 175400573 aaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125700 4 + 173848474 aaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5924877 4 +   6154872 aaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74641329 4 + 122973662 aaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30123295 4 + 172585720 aaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29786374 4 - 170955103 aaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2833878 4 -   2996164 aaat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     583384 4 +    766320 aaaT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29040274 4 -  71996105 aaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     235491 4 +    290775 aaat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2678919 4 -   3067355 aaat
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     343526 4 -    457564 AAAT
i aotNan1.NW_018509740v1   I 992 C 0
s otoGar3.GL873550           155951 3 +  18854210 AGA-
i otoGar3.GL873550         I 1 C 0
s dasNov3.JH582591            81475 4 +    102524 aaat
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e cebCap1.NW_016107755v1     272298 142 -   1771730 I
e calJac3.chrUn_GL286223      53219 0 +    132061 C

a score=74029.000000
s hg38.chr6_GL000254v2_alt   928693 11 +   4827813 aaataaataac-----------
s panTro5.chr6             29891627 11 + 175400573 aaataaataac-----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30125704 11 + 173848474 aaataaataaC-----------
i panPan2.chr6             C 0 T 2519
s gorGor5.CYUI01015250v1    5924881 11 +   6154872 aaataaataaa-----------
i gorGor5.CYUI01015250v1   C 0 I 4
s nomLeu3.chr1a            74641333 11 + 122973662 aaataaataaa-----------
i nomLeu3.chr1a            C 0 I 8
s rheMac8.chr4             30123299 11 + 172585720 acataaataac-----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29786378 11 - 170955103 acataaataac-----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2833882 11 -   2996164 acataaataac-----------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     583388 11 +    766320 ACATAAataac-----------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29040278 11 -  71996105 acataaataac-----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     235495 11 +    290775 acataaataac-----------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2678923 11 -   3067355 acataaataac-----------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      53219 11 +    132061 aaataaataac-----------
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     343530 11 -    457564 AAATAAataac-----------
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           155954  7 +  18854210 ----AAATCAC-----------
i otoGar3.GL873550         C 0 I 2
s dasNov3.JH582591            81479 21 +    102524 -aagaaacagcagcagcatagc
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e cebCap1.NW_016107755v1     272298 142 -   1771730 I

a score=252935.000000
s hg38.chr6_GL000254v2_alt   928704 34 +   4827813 cacaatac--tattatcacatcttacaaactcaaca
s panTro5.chr6             29891638 34 + 175400573 cacaatac--tattatcacatcttacaaactcaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30123196 34 + 173848474 cacaatac--tattatcacatcttacaaactcaaca
i panPan2.chr6             T 2519 C 0
s gorGor5.CYUI01015250v1    5924896 34 +   6154872 cacaatac--tattatcacatcttacaaactcaaca
i gorGor5.CYUI01015250v1   I 4 C 0
s nomLeu3.chr1a            74641352 34 + 122973662 cacaatac--tattatcacatcttaaaaactcaaca
i nomLeu3.chr1a            I 8 C 0
s rheMac8.chr4             30123310 34 + 172585720 tacaatac--tattatcacatcttaaaaactcaaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29786389 34 - 170955103 tacaatac--tattatcacatcttaaaaactcaaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2833893 34 -   2996164 tacaatac--tattatcacatcttaaaaactcaaca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     583399 34 +    766320 tacaatactatattatcacattt--aaaactcaaca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29040289 34 -  71996105 tacaatac--tattatcacatcttaaaaactcaata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     235506 34 +    290775 tacaatac--tattatcacatcttaaaaactcaaca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2678934 34 -   3067355 tacaatac--tattatcacatcttaaaaactcaaca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      53230 34 +    132061 cacaatac--tgttatcacatcttaaaaactcaaca
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     343541 34 -    457564 cacaatac--tattatcacatcttaaaaactcaacg
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           155963 22 +  18854210 CTTTGTAT--TCTTGTTGCTTTAC------------
i otoGar3.GL873550         I 2 C 0
s dasNov3.JH582591            81500 31 +    102524 cacaatac--tatgatcaaa-ctgaaaaa--taaca
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e cebCap1.NW_016107755v1     272298 142 -   1771730 I

a score=679377.000000
s hg38.chr6_GL000254v2_alt   928738 73 +   4827813 aaaatttcttaatatcat-------caaatacccagtttgtgttcaaattttcctga-ttgtttcataaatatactcttac
s panTro5.chr6             29891672 73 + 175400573 aaaatgtcttaatatcat-------caaatacccagtttgtgttcaaattttcctga-ttgtttcataaatatactcttac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30123230 73 + 173848474 aaaatgtcttaatatcat-------caaatacccagtttgtgttcaaattttcctga-ttgtttcataaatatactcttac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5924930 73 +   6154872 aaaatttcttaatatcat-------caaatacccagtttgtgttcaaattttcctga-ttgcttcataaatatactcttac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74641386 73 + 122973662 aaaatttcttaatatcat-------caaataccccgtttatggtcaaattttcctga-ttgttttataaatatactcttac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30123344 73 + 172585720 aaaatttcttaatatcgt-------caaatacccagcttgtgttcaaattttcctga-ttgtttcataaatacactcttac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29786423 73 - 170955103 aaaatttcttaatatcgt-------caaatacccagtttgtgttcaaattttcctga-ttgtttcataaatacactcttac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2833927 73 -   2996164 aaaatttcttaatatcgt-------caaatacccagtttgtgttcaaattttcctga-ttgtttcataaatacactcttac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     583433 73 +    766320 aaaatttcttaatatcat-------caaatacccag-ttgtgttcaaattttcctgatttgtttcataaatacactcttac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29040323 72 -  71996105 aaaatttctt-atatcgt-------caaatacccagtttgtgttcaaattttcctga-ttgtttcataaatacactcttac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     235540 73 +    290775 aaaatttcttaatatcat-------caaatacccagtttgtgttcaaattttcctga-ttgtttcataaatacactcttac
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2678968 73 -   3067355 aaaatttcttagtatcat-------caaatacccagtttgtgttcaaattttcctga-ttgtttcataaatatactcttac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      53264 73 +    132061 aaattttattaatatcat-------caaatacctagtttttgttcaaattttcctga-ttgtttcataaatacatccttac
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     272440 73 -   1771730 aaaatttcttaatatcat-------caaatacctagtttttgttcaaatttttctga-ttgtttcataaatacactcttac
i cebCap1.NW_016107755v1   I 142 C 0
s aotNan1.NW_018509740v1     343575 73 -    457564 aaaatttcttaatatcat-------caaatacctagtttttgttcaaattttcctga-ttgtttcataaatacactcttac
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           155985 47 +  18854210 --------------TCAT---------AATGTCTAAtt----------ttctcctta-tttatttagagacatggtctcac
i otoGar3.GL873550         C 0 I 144
s dasNov3.JH582591            81531 77 +    102524 aaaattcctcaacaccgtctatgtccaaattcccagtctatgtccaaatcttcctga-atgctttaaag---tgttttgac
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=1362219.000000
s hg38.chr6_GL000254v2_alt   928811 157 +   4827813 agttggtttcttttagcgagattcaaatgagacccaCCT---GTTGACCtttgccct-tagggtttcccagggtctgaattttgttgacgacattcccatgttgctatgtaatacggtcctccatgccctgtg-tttttctgtaa--actga--tagatgtggagg
s panTro5.chr6             29891745 150 + 175400573 agttggtttcttttagcgagattcaaatgagacccacct---gttga-------cct-tagggtttcccagggtctgaattttgttgacgacattcccatgttgctatgtaatacggtcctccatgccctgtg-tttttctgtaa--actga--tagatgtggagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30123303 150 + 173848474 agttggtttcttttagcgagattcaaatgagacccacct---gttga-------cct-tagggtttcccagggtctgaattttgttgacgacattcccatgttgctatgtaatacggtcctccatgccctgtg-tttttctgtaa--actga--tagatgtggagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5925003 157 +   6154872 agttggtttcttttagagagattcaaacgagacccacct---tttgacctttgccct-tagggtttcccagggtctgaattttgttgacgacattcccatgttgctatgtaatacggtcctccatgccctgtg-tttttctgtaa--actga--tagatgtggagg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74641459 157 + 122973662 agttggtttcttttagcgagattcaaaCGTGACCCACCT---GTTGACCtttgccct-tagggtttcccacggtctgaattttgttgacgacattcccaagttgctatgtaatacggtcctccatgccctgtg-tttttctgtaa--actga--tagatgtgcagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30123417 157 + 172585720 agttggtttcttttagtgagattcaaacaagacccacct---gttgacctttgccct-tagggtttcccacggtctgaattttgttgacgacattcccatgttgctacataatacggtcctccatgccctgtg-tttttctgtaa--actga--tagatgtggaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29786496 157 - 170955103 agttgatttcttttagtgagattcaaacaagacccaCCT---GTTGACCtttgccct-tagggtttcccactgtctgaattttgttgacaacattcccatgttgctacataatacggtcctccatgccctgtg-tttttctgtaa--actga--tagatgtggaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2834000 157 -   2996164 agttggtttcttttagtgagattcaaacaagacccacct---gttgacctttgccct-tagggtttcccactgtctgaattttgttgacaacattcccatgttgctacataatacggtcctccatgccctgtg-tttttctgtaa--actga--tagatgtggaag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     583506 156 +    766320 agttggtttcttttagtgagattcaaacaagacccacct---gttgacctttgCCTT---AGGtttcccacggtctgaattttgttgacgacattcccatgttgctatataatacggtcctccatgccctgtgttttttctgtaa--actga--tagatgtggaag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29040395 156 -  71996105 agttggtttcttttagtg-gattcaaacaagacccaCCT---GTTGACCtttgccct-tagggtttcccacggtctgaattttgttgacgacattcccatgttgctacataatacagtcctccatgccctgtg-tttttctgtaa--actga--tagatgtggaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     235613 157 +    290775 agttggtttcttttagtgagattcaaacaagacccacct---gttgacctttgccct-tagggtttcccactgcctgaattttgttgacaacattcccatgttgctatataatacggtcctccatgccctgtg-tttttctgtaa--actga--tagatgtggaag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679041 157 -   3067355 agttggtttcttttagtgagattcaaacaagacccacct---gttgacctttgccct-tagggtttcccatggtctgaattttgttgatgacattcccatgttgctatgtaatacggtcctccatgccctgtg-tttttctgtaa--actga--tagatgtggaag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      53337 156 +    132061 agttggtttcttttatcaagattcaaacaagacctatct---gttgacgtttgccct-tagggtttcccatggtctgaattttgctgacaggattcccatcttgctatgtaacagggtcctccatg-cctgta-ttttcctgtaa--actga--tagatgtggagg
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     272513 156 -   1771730 ggttggttcctcttatcaagattcaaacaagacccatct---gttgacgtttgccct-tagggtttcccatggtctgaattttgctgacgacattcccatgttgctacgtagcacggtcctccatg-cctgta-ttttcctgtaa--actga--tagatgtggagg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     343648 157 -    457564 agttggtttcttttatcaagattcaaacaaga--tACTTAGGGTTGAcgtttgccct-tagggtttcccatggtctgaatcttgctgacgacattcccacgttgttatgtaacacggtcctccatg-cctgta-ttttcctgtaa--accga--tagatgtggagg
i aotNan1.NW_018509740v1   C 0 C 0
s dasNov3.JH582591            81608 153 +    102524 agttggcttctctgaatcag--CCTAACCAGAGTCaaac---cttggtgcttgccctgcggggtttcccacggtctgggctgtgctgattgccttcctgc------atgtaacatagcacctcctgccctgta--cttcctgtaatgactgagctagcggtgggga
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26259721 827 +  26524999 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           156032 144 +  18854210 I

a score=914234.000000
s hg38.chr6_GL000254v2_alt   928968 99 +   4827813 tgcaatgacatttgtgtttgatttactttggcaaatatagttcatcagtgatactctatacttcttgttgctttacatccggaggctgataatgtctgc
s panTro5.chr6             29891895 99 + 175400573 tgcaatgacatttgtgtttgatttactttggcaaatatagttcatcagtgatactctatacttcttgttgctttacatccggaggctgataatgtctgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30123453 99 + 173848474 tgcaatgacatttgtgtttgatttactttggcaaatatagttcatcagtgatactctatacttcttgttgctttacatccggaggctgataatgtctgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5925160 99 +   6154872 tgcaatgacatttgtgtttgatttactttggcaaatataattcatcagtgatactctatacttcttgttgctttgcatccggaggctgataatgtctgc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74641616 99 + 122973662 tgcaatgacatttgtgtttgatttactttggcaaatatagttcatcagtgatactctatacttcttgttgctttacatgcagaggctaataatgtctgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30123574 99 + 172585720 tgcaatgacattcgtgtttgatttactttggcaagtatagttcatcagtgatactctatacttcttgttgatttacatccaaaggctaataatgtctgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29786653 99 - 170955103 tgcaatgacattcgtgtttgatttactttggcaagtatagttcatcagtgatactctatacttcttgttgatttacatccaaaggctaataatgtctgc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2834157 99 -   2996164 tgcaatgacattcgtgtttgatttactttggcaagtatagttcatcagtgatactctatacttcttgttgatttacatccaaaggctaataatgtctgc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     583662 98 +    766320 tgcaatgacattcgtgtttgatttactttggcaagtatagttcaccagtgatactctatacttcttgttgatttacatccaaaggctaataatg-ctgc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29040551 99 -  71996105 tgcaatgacattcgtgtttgatttactttggcaagtatagttcatcagtgatactctatacttcttgttgatttacatgcaaaggctaataatgcctgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     235770 99 +    290775 tgcaatgacattcgtgtttgatttactttggcaagtatagttcatcagtgatactctatacttcttgttgatttacatccaaaggctaataatgtctgc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679198 99 -   3067355 tgcaatgacattcgtgtttgatttactttgacaagtatagttcatcagtgatactctatacttcttgttgatttacatccggaggctaataatgtctgc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      53493 99 +    132061 tgcaatgacattcgggtttgatttactttggcaagtatagttaatcagtgatgctctatactGCTTGTTTCTTTATATCTGGAGGTTAATAATGTCTGC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     272669 99 -   1771730 tgcgatgacattcgggtctgatttactttggcaagtatagttaatcagtgatgttctatacttcttgtttctttacctccggaggctaataatgtctgc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     343805 99 -    457564 tgcgatgacgctcgggtttgatttactttggcaagtatagttaatcagtgatgctctatacttcttgtttctttacatccggaggctaataatgtctgc
i aotNan1.NW_018509740v1   C 0 C 0
s canFam3.chr35            26260548 94 +  26524999 TGCAACCAGACCCAGGTTTAATTGATTTTCTCAAGCA---TTAATAGGTGATGCCGTAGATTCTGTGTTGCTTT-CACCAGCTGGCC-CCAATGGCTCC
i canFam3.chr35            I 827 I 3
s dasNov3.JH582591            81761 85 +    102524 -----tcaga-tcaggtgtggtttattctggcaaccacacctca-cggtggtgctgtata-------gtgctctgcatcaagaagctcataacatctgg
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I
e otoGar3.GL873550           156032 144 +  18854210 I

a score=441787.000000
s hg38.chr6_GL000254v2_alt   929067 55 +   4827813 ttttctctcttt-------tCTAATTATTTGTGAAAGG---AAAAATGTG---GGGG-GTTGGGAGAAA
s panTro5.chr6             29891994 55 + 175400573 ttttctctcttt-------tCTAATTATTTGTGAAAGG---AAACATGTT---GGGG-GTTGGGAGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30123552 55 + 173848474 ttttctctcttt-------tCTAATTATTTGTGAAAGG---AAACATGTG---GGGG-GTTGGGAGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5925259 55 +   6154872 ttttctctcttt-------tCTAATTATTTGTGAAAGG---AAAAATGTG---GGGG-GTTGGGAGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74641715 55 + 122973662 ttttctctcttt-------tCTAATTATTTGTGAAAGG---AAAAATGTG---GGGG-GTTGGGAGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30123673 55 + 172585720 ttttctctcttt-------tCTCATTATTTGCGAAAGT---AAAAATATG---GGGG-TTTGGGAGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29786752 55 - 170955103 ttttctctcttt-------tCTAATTATTTGCGAAAGT---AAAAATATG---GGGG-TTTGGGAGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2834256 55 -   2996164 ttttctctcttt-------tCTAATTATTTGCGAAAGT---AAAAATATG---GGGG-TTTGGGAGAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     583760 54 +    766320 ttttccTCTCTT-------TCTAATTATTTGCGAAAGT---AAAAATAT----GGGG-TTTGGGAGAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29040650 55 -  71996105 ttttctctcttt-------tCTAATTATTTGCGAAAGT---AAAAATATG---GGGG-TTTGGGAGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     235869 55 +    290775 ttttctctcttt-------tCTAATTATTTGCGAAAGT---AAAAATATG---GGGG-TTTGGGAGAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679297 55 -   3067355 ttttctctcttt-------tTTAATTATTTGCGAAAGT---AAAAATATG---GGGG-GTTGGGAGAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      53592 58 +    132061 TTTTCTCTTTTT-------TCTAATTATTTGTAAAAGT---AAAAATGCGTGTTGGG-GGAGGGAGAAA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     272768 57 -   1771730 ttttctcttttt-------tCTAATTATTTGTGAAAGT---AAAAATGTGTG-TGGG-GGAGGGAGAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     343904 56 -    457564 ttttctc-tttt-------tCTAATTATTTGTGAAGTT---AAAAATGTGTG-GGGG-GGAGGGAGAAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           156176 50 +  18854210 TCTAATCCTTTG-------TGAACATATGTGTGCAAAA---AAAAACAAA---GA------AAAAGGAA
i otoGar3.GL873550         I 144 C 0
s canFam3.chr35            26260645 49 +  26524999 TTTTCTCTTTCT--GTGA-TCCTAGTACTT-----AGT---GAAGGTATG---CAGG-TGTGTG-----
i canFam3.chr35            I 3 C 0
s dasNov3.JH582591            81846 66 +    102524 ttttctctcttttcatgatTCTAATCTTCTGTGAAAGTATAAAAGGTATG---GGGGAGGAGGGAGAAA
i dasNov3.JH582591         C 0 I 265
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=71486.000000
s hg38.chr6_GL000254v2_alt   929122 25 +   4827813 A---------AAACCCTTAAGTACATACTCGCTA
s panTro5.chr6             29892049 25 + 175400573 A---------AAACCCTTAAGTACATACTCACTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30123607 25 + 173848474 A---------AAACCCTTAAGTACATACTCACTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5925314 25 +   6154872 A---------AAACCCTTAAGTACATACTCACTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74641770 25 + 122973662 A---------AAACCCTTAAGTATATACTCACTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30123728 34 + 172585720 GTATGTATGTACTCACTTAAGTATGTACTCACTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29786807 34 - 170955103 GTATGTATGTACTCACTTAAGTATGTACTCACTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2834311 34 -   2996164 GTATGTATGTACTCACTTAAGTATGTACTCACTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     583814 34 +    766320 GTATGTATGTACTCACTTAAGTATGTACTCACTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29040705 30 -  71996105 GTATGTATGTACTC----AAGTATGTACTCACTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     235924 34 +    290775 GTATGTATGTACTCACTTAAGTATGTACTCACTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679352 24 -   3067355 ----------AACCCCTTAAGTATGTACCCACTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      53650 11 +    132061 A---------ACT--------------TTCCCTA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     272825 24 -   1771730 A---------ACTC-TTAAGGCACTTATTTGCTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     343960 11 -    457564 A---------ACT--------------CTCCCTA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           156226 24 +  18854210 ----------AAACCCTAGAGTATATACCTGCTA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26260694 20 +  26524999 ----------AAGCACTGAACTATGCACCC----
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            82177 20 +    102524 --------------aagaagggagagaATTCCTA
i dasNov3.JH582591         I 265 C 0
e micMur3.chr6               175232 3062 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=226721.000000
s hg38.chr6_GL000254v2_alt   929147 17 +   4827813 AATCACATTGCTACAGG
s panTro5.chr6             29892074 17 + 175400573 AATCACATTGCTACAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30123632 17 + 173848474 AATCACATTGCTACAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5925339 17 +   6154872 AATCACATTGCTACAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74641795 17 + 122973662 AATCACATTGCTACAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30123762 17 + 172585720 AATCACATTGCTATAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29786841 17 - 170955103 AATCACATTGCTATAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2834345 17 -   2996164 AATCACATTGCTATAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     583848 17 +    766320 AATCACATTGCTATAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29040735 17 -  71996105 AATCACATTGCTATAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     235958 17 +    290775 AATCACATTGCTATAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679376 17 -   3067355 AATCACATTGCTACAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      53661 17 +    132061 AATCACATTGCTACAGG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     272849 17 -   1771730 AATCACATTGCTACAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     343971 17 -    457564 AATCACATTGCTACAGG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               178294 17 + 123392446 AATCACATTGCTATGGG
i micMur3.chr6             I 3062 C 0
s otoGar3.GL873550           156250 17 +  18854210 AATCATATTGCTACAGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26260714 10 +  26524999 ----ACATTG---TGGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            82197 17 +    102524 AATCCCATTGCTACATG
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             1896 4549 -    110772 I

a score=54520.000000
s hg38.chr6_GL000254v2_alt   929164 4 +   4827813 --TAAC
s panTro5.chr6             29892091 4 + 175400573 --TAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30123649 4 + 173848474 --TAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5925356 4 +   6154872 --TAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74641812 4 + 122973662 --TAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30123779 4 + 172585720 --taac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29786858 4 - 170955103 --taac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2834362 4 -   2996164 --taac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     583865 4 +    766320 --taac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29040752 4 -  71996105 --TAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     235975 4 +    290775 --taac
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679393 4 -   3067355 --taac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      53678 4 +    132061 --TAAC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             6445 4 -    110772 --tggc
i saiBol1.JH378388         I 4549 C 0
s cebCap1.NW_016107755v1     272866 4 -   1771730 --TAAC
i cebCap1.NW_016107755v1   C 0 I 143
s aotNan1.NW_018509740v1     343988 4 -    457564 --TAAC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               178311 4 + 123392446 --TAAT
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           156267 4 +  18854210 --TAAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26260724 4 +  26524999 --TCAC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            82214 6 +    102524 TGTAGC
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I

a score=143379.000000
s hg38.chr6_GL000254v2_alt   929168 12 +   4827813 -TTCCAT-----TAAGAA
s panTro5.chr6             29892095 12 + 175400573 -TTCCAT-----TAAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30123653 12 + 173848474 -TTCCAT-----TAAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5925360 12 +   6154872 -TTCCAT-----TAAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74641816 12 + 122973662 -TTCCAT-----TAAGAA
i nomLeu3.chr1a            C 0 I 314
s rheMac8.chr4             30123783 12 + 172585720 -ttccat-----taagaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29786862 12 - 170955103 -ttccat-----taagaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2834366 12 -   2996164 -ttccat-----taagaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     583869 12 +    766320 -ttccat-----taagaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29040756 12 -  71996105 -TTCCAT-----TAAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     235979 12 +    290775 -ttccat-----taagaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679397 12 -   3067355 -ttccat-----taagaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      53682 12 +    132061 -TTCCAT-----TAAGAT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             6449 12 -    110772 -cCCCAT-----TAAGAT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     273013 12 -   1771730 -TTCCAT-----TAAGAT
i cebCap1.NW_016107755v1   I 143 C 0
s aotNan1.NW_018509740v1     343992 12 -    457564 -TTCCAT-----TAAGAT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               178315 12 + 123392446 -TTTCAC-----TAAGGA
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           156271 12 +  18854210 -GATCAA-----TAAGAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26260728 12 +  26524999 -TTCTGA-----GAAGAT
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            82220 18 +    102524 TTTCTGTTAATGTAAGAA
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I

a score=2742885.000000
s hg38.chr6_GL000254v2_alt   929180 216 +   4827813 CTTGAAAGTAAAGGTAGCTGCA-TTTTCCCCTAGGGAACACAATGATAGA--------------CAGGAGCCT-TAGTCTACAGCTTGAAGGATTGTAATTATACCTAAGCAACCCTCCTGGAC---CAGTTTAATGTTATTAGCTGTGATGT-AT-CCCTACCTTTGATGTCATTATCCTTACTTAGctcccttaaagcagagatcaagatgaaaagggcttcagctgcagcatgg
s panTro5.chr6             29892107 216 + 175400573 CTTGAAAGTAAAGGTAGCTGCA-TTTTCCCCTAGGGAACACAATGATAGA--------------CAGGAGCCT-TAGTCTACAGCTTGAAGGATTGTAATTATACCTAAGCAACCCTCCTGGAC---CAGTTTAATGTTATTAGCTGTGATGT-AT-CCCTACCTTTGATGTCATTATCCTTACTTAGctcccttaaagcagagatcaagatgaaaagggcttcagttgcagcatgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30123665 216 + 173848474 CTTGAAAGTAAAGGTAGCTGCA-TTTTCCCCTAGGGAACACAATGATAGA--------------CAGGAGCCT-TAGTCTACAGCTTGAAGGATTGTAATTATACCTAAGCAACCCTCCTGGAC---CAGTTTAATGTTATTAGCTGTGATGT-AT-CCCTACCTTTGATGTCATTATCCTTACTTAGctcccttaaagcagagatcaagatgaaaagggcttcagttgcagcatgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5925372 216 +   6154872 CTTGAAAGTAAAGGTAGCTGCA-Ttttcccctagggaacacaacgataga--------------caggagcct-tagtctacagcttgaaggattgtaattatacctaagcaaccctcctggac---cagttcaacgttattaGCTGTGATGT-AT-CCCTACCTTTGATGTCATTATCCTTACTTAGctcccttaaagcagagatcaagatgaaaagggcttcagttgcagcatgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74642142 216 + 122973662 CTTGAAAGTAAAGGTCGctgca-tcttcttttagggaacacaataataga--------------cagaagcct-tagtctacagcttgaaggattgtaattatacctaagcaaccctcctggac---cagtttaacgttattaGCTGTGATGT-AT-CCCTACCTTTGATGTCATTATCCTTACTTAGctcccttaaagcagagatcaagatgaaaagggcttcagctgcagcatcg
i nomLeu3.chr1a            I 314 C 0
s rheMac8.chr4             30123795 216 + 172585720 cttgaaagtaaagtttgctgCA-TTTTCCTCTAGGGAACACAATAATAGA--------------CTGGAGCCT-TAGTCTACAGCTTAAAGGATTGCAATTATACCTGAGCCACCTTCCTGGAC---CAGTTTAACATTATTGGCTGTGATGT-TT-CCCCACCTTCGATGTCAATATCCTTACTTAGctcccttaaagcagagatcaagatgaaaagggcttcagctgcggcatgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29786874 216 - 170955103 cttgaaagtaaagtttgctgCA-TTTTCCTCTAGGGAACACAATAATAGA--------------CAGGAGCCT-TAGTCTACAGCTTAAAGGATTGCAATTATACCTGAGCAACCTTCCTGGAC---CAGTTTAACATTATTGGCTGTGATGT-TT-CCCCACCTTCGATGTCAATATCCTTACTTAGctcccttaaagcagagatcaagatgaaaagggcttcagctgcggcatgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2834378 216 -   2996164 cttgaaagtaaagtttgctgCA-TTTTCCTCTAGGGAACACAATAATAGA--------------CTGGAGCCT-TAGTCTACAGCTTAAAGGATTGCAATTATACCTGAGCAACCTTCCTGGAC---CAGTTTAACATTATTGGCTGTGATGT-TT-CCCCACCTTCGATGTCAATATCCTTACTTAGctcccttaaagcagagatcaagatgaaaaaggcttcagctgcggcatgg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     583881 216 +    766320 cttgaaagtaaagtttgctgCA-TTTTCCTCTAGGGAACACAATAATAGA--------------CAGGAGCCT-TAGTCTACAGCTTAAAGGATTGTAATTATACCTGAGCAACCTTCCTGGAC---CAGTTTAACATTATTGGCTGTGATGT-AT-CCCCACCTTTGATGTCAATATCCTTACTTAGctcccttaaagcagagatcaagatgaaaagggcttcagctgcagcatgg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29040768 216 -  71996105 CTTGAAAGTAAAGTTCGATGCA-TTTTCCTCTAGGGAACACAATAATAGA--------------CAGGAGCCT-TAGTCAACAGCTTAAAGGATTGTAATTATACCTGAGCAACCTTCCTGGAC---CAGTTTAACATTATTGGCTGTGATGT-AT-CCCTACCTTTGATGTCAATATCCTTACTTAGctcccttaaagcagagatcaagatgaaaagggcttcagctgcagcatgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     235991 216 +    290775 cttgaaagtaaagtttgctgCA-TTTTCCTCTAGGGAACACAATAATAGA--------------CAGGAGCCT-TAGTCTACAGCTTAAAGGATTGTAATTATACCTGAGCAACCTTCCTGGAC---CAGTTTAACATTATTGGCTGTGATGT-AT-CCCCACCTTTGATGTCAATATCCTTACTTAGctcccttaaagcagagatcaagatgaaaagggcttcagctgcagcatgg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679409 216 -   3067355 cttgaaagtaaagtttgctgCA-TTTTCCTCTAGGGAACACAATAATAAA--------------CAGGAGCCT-TAGTCTACAGCTTAAAGGACTGTAATTATACCTGAGCAACCTTCCTGGAC---CAGTTTAACGTTATTGGCTGTGATGT-AT-CCTTACCTTTGATGTCAATATCCTTACTTAGctcccttaaagcagagatcaagatgaaaagggcttcagctgcagcatgg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      53694 219 +    132061 CTCGAAAGTAAAGTCTGCTGCA-TTTTCCTCTAGGGAACATGATGATAGA--------------CAGGAACCT-TAGTCTACAGCTTGACGGACTGTAATTATACCTAAGCAACTGCCCTGGACGAGGAGTTTAACGTTACTAGCTGTGACAT-AT-CCCTACTTTGGATGGCAATATCCTTACTTAGctcccttaaaacagagatcaagatgaaaaggccttcagctgcagcatgg
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             6461 215 -    110772 CTTGAAAGTAAAGTTTGCTGCA-TGTTCCTCTAGGGAACAGGATAATAGA--------------CAGGAGCCT-TGGTCTATGGCTTGA-GGATTGTAATTATACCTAAGCAACTGCCCTGGAC---CAGTTTAACGTTACTAGCTGTGATGT-AT-CCCTATCTTGGATAGCGATATCCTTACTTAGCTCCCTTAAAACAGAGATCAAGATGAAAATAGTTTCAGCTGCAGCATGG
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     273025 215 -   1771730 CTTGAAAGTAAAGTTTGCTGCA-TGTTCCTCTAGGGAACAGGATAATAGA--------------CAGAAGCCT-TAGTTTACGGCTTGA-GGACTGTAATTATACCTAAGCAACTGCCCTGGAC---CAGTTTAACGTTACTAGCTGTGATGT-AT-CCCTAACTTGGATAGCAATATCCTTACTTAGctcccttaaaacagagatcaagatggaaagggtttcagctgcagcatgg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     344004 215 -    457564 CTTGAAAGTAAAGTCTGCTGCA-TTTTCCTCTAGGGAACAGGATGATAGA--------------CAGGAGCCT-TAGTCTACAGCTTGA-AGACTGTAATTATACCTAAGCAACTGCCCTGGAC---CAGTTTAACGTTACTAGCTGTGACAT-AT-CCCTTCATTGGATGGCAATATCCTTACTTAGCTCTcttaaaacagagatcaagatgaaaagggcttcagctgcagcatgg
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               178327 216 + 123392446 CTTGCAGGTGAAGTTTGCTGCA-TTTTCTCCTGGGGAACACAAAAGTAGA--------------CAAGAGCCT-TAGTCTGCAGCTTGAAGGACTGTAGTTATACCTCAGCAATCCTCCTGGAC---CAATTTAATGTTGCTGGCTGTGACTTAAT-CCCT-TCTTCCATGGCAGTCTCCTTATGTAGcccccctaaagcagagaacaagatgaaaagggcttcaactacagcatgg
i micMur3.chr6             C 0 I 538
s otoGar3.GL873550           156283 232 +  18854210 CTCGTAAATAAAGATTGCTGCC-TTTTCTTCTTGGGAACACAATCATAGAGCTTCAGCTTATGTCTTCAGCCTAAAGTCTGAAGCTTAAAGGACAGTAGTTGTACCTAAGCAATCCTCCCAGAC---CAATTTAATATTCCTGGCTGTGACTTAAT-ACCTGCCTTTGATAACAGTATTCttatctagcccccctaaagcagagaacaagatgaaaagggcttcagctgcagcatgg
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26260741 203 +  26524999 TCCGAGATTAGAATCGCCTGCA-TTTTCTTCTGGGGAACAAAACTCTAGG--------------CAAGAGCCT-TAATCTGCAGCTGGAAAGGCTTTATTCCCACCTAAGAACCCTG--TAGAC---CA-------CTTGCTTGCTGACACCT-ACACCCCACCCTTGATGGCAGTATCATGACGTGGCCTTGTTACAG----GACACAGGGGGAAAGTATATGAGCC-CAGCCAGG
i canFam3.chr35            I 1 I 2
s dasNov3.JH582591            82238 213 +    102524 CGTGAGAGTGAACTTTGTTGCATTTTTCCTCTGGGGAACGCAACAGCAGA--------------CAAGACCTT-TAACCTGCAGCTTGCAGGGTTGCA-CTGCGCCTGAGAATCACTTCCCAGT---CGGTTTGCCGTTATTCGCTGTGACGTAAT-CCCTACCTTTCATGGCAGTAGCCTAATCT--CCCTCCTAAAGCAGAGG-CAAGGTGGGAAGGGCTGTGGCAGC-GCGTGG
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I

a score=1225695.000000
s hg38.chr6_GL000254v2_alt   929396 112 +   4827813 cacatgga-gattaga---GTGGGGCTTTTGGATGCTGAGGAGCAG------AC-CTAGAATGGG--AAATAGATGGGAGC--------CACAGAAG-----TGAAGGTC-C-CCCTCCCTCAT--------------------TGCTCAACCTACTCCA
s panTro5.chr6             29892323 112 + 175400573 cacatgga-gattaga---gtggggattttggatgctgaggagcag------ac-ctagaatggg--aaacagatgggagc--------tacagaaA-----TGAAGGTC-C-CCCTCCCTCAT--------------------TGCTCAACCTACTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30123881 112 + 173848474 cacatgga-gattaga---gtggggcttttggatgctgaggcgcag------ac-ctagaatggg--aaacagatgggagc--------tacagaaG-----TGAAGGTC-C-CCCCCCCTCAT--------------------TGCTCAATCTACTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5925588 112 +   6154872 cacatgga-gattaga---GTGGGGCTTTTGGATGCTGAGGAGCAG------AC-CTAGAATGGG--AAATAGATGGGAGC--------CACAGAAG-----TGAAGGTC-C-CCCTCCCTCAT--------------------TGCTCAACCTACTCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74642358 112 + 122973662 cacatgga-gattaga---GTGGGGCTTTTGGATGCTGAGGAGCAG------AC-CTAGAATGGG--AAATAGATGGGAGC--------CACAGAAG-----TGAAGGTC-C-CCCTCCCTCAT--------------------TGCTCAACCTACTCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30124011 112 + 172585720 cacatgga-gattaCA---GCGGGGCTTTTGGATGCTGAGGAGCAG------AC-CTAGAATGGG--AAATAGATGGGAGC--------CACAAAAG-----TGAAGGCC-C-CCCTCCCTCAT--------------------TGCTCAACCTACTCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29787090 112 - 170955103 cacatgga-gattaga---GCGGGGCTTTTGGATGCTGAGGAGCAG------AC-CTAGAATGGG--AAATAGATGGGAGC--------CACAAAAG-----TGAAGGCC-C-CCCTCCCTCAT--------------------TGCTCAACCTACTCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2834594 112 -   2996164 cccatgga-gattaga---GCGGGGCTTTTGGATGCTGACGAGCAG------AC-CTAGAATGGG--AAATAGATGGGAGC--------CACAAAAG-----TGAAGGTC-C-CCCTCCCTCAT--------------------TGCTCAACCTACTCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     584097 112 +    766320 cacataga-gattaga---GCGGGGCTTTTGGATGCTGAGGAGCAG------AC-CTAGAATGGG--AAATAGATGGGAGC--------CACAAAAG-----TGAAGGTC-C-CCCTCCCTCAT--------------------TGCTCAACCTACTCCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29040984 112 -  71996105 cacacgga-gattaga---GCGGGGCTTTTGGATGCTGAGGAGCAG------AA-CTAGAATGGG--AAATAGATGGGAGC--------CACAAAAG-----TGAAGGTC-C-CCCTCCCTCAT--------------------TGCTCAACCTACTCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     236207 112 +    290775 cacatgga-gattaga---GCGGGGCTTTTGGATGCTGAGGAGCAG------AC-CTAGAATGGG--AAATAGATGGGAGC--------CACAAAAG-----TGAAGGTC-C-CCCTCCCTCAT--------------------TGCTCAACCTACTCCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679625 112 -   3067355 cacatgga-gattaga---gcagggcttttggatgctgaggagcag------ac-ctagaatggg--AAATAGATGGGAGC--------CACAAAAG-----TGAAGGTC-C-CCCTCCCTCAT--------------------TGCTCAACCTACTCCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      53913 113 +    132061 cacattga-gtttaga---GCAGAGCTTTTGAATGCTGTGGAGCAG------AC-CTAGCATGGG--AAATAGATGGGAGC--------CACAGAAG-----TGAAGGTC-CTCCCTCCCTCAT--------------------TGCCCAACCTACTCCA
i calJac3.chrUn_GL286223   C 0 I 47
s saiBol1.JH378388             6676 113 -    110772 CACATGGA-GTTTAGA---GAAGGGCTTTTGAATGCTGTGGAGCAG------AC-CTAGCATGGG--AAATAGATGGGAGC--------CACAGAAG-----TGAAGGTC-CTCCCTCCCTCAT--------------------TGCCCAACCTACTCCA
i saiBol1.JH378388         C 0 I 25
s cebCap1.NW_016107755v1     273240 113 -   1771730 cacatgga-gtttaga---GCAGGACTTTTGAATGCTGTGAAGCAG------AC-CTAGCAGGGG--AAATAGATGGGAGC--------CACAGAAG-----TGAAGGTC-CTCCCTCCTTCAT--------------------TACCCAacctactcca
i cebCap1.NW_016107755v1   C 0 I 25
s aotNan1.NW_018509740v1     344219 113 -    457564 cacatgga-gtttaga---GCAGGGCTTTTGAATGCTGTGGAGCAG------AC-CTAGCATGGG--AAATAGATGGGAGC--------CACAGAAG-----TGAAGGTC-CTCCCTCCCTCAT--------------------TGCCCAGcctactcca
i aotNan1.NW_018509740v1   C 0 I 408
s otoGar3.GL873550           156515 114 +  18854210 aactttga-gatcagataggcagagcttttggatgctgaggggaag------at-ttagaagagg--aaatagatggcagc--------tagagagg-----tgaagttcac-cctttctTCAC--------------------TGGCCATCCTATTC--
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26260946 138 +  26524999 CCCAGGGATGACCCAG---GTGGAGCTCACAGGCACTGGAGAGCTGGACTTTAC-CATGGAGGGGCAGAGCTGACAGGAGC--------CCTGTCAG--------GGGTC-C-CACTCCCACCCCTCAAGCATCAAACCCTGCATGTCCGACTGTCTCAA
i canFam3.chr35            I 2 C 0
s dasNov3.JH582591            82451 126 +    102524 GATGCTGA-GAACAGGCAGGTAGAGCTT-TGGGCACCGAGGAGCAA------ACTCAAGAACAGG--GGGAAAAGGGGAGCCCATCGCTCACCCAGGCCAGCTGAATCAC-C-CCTTCCCGCGT--------------------TGCCCACCCCCCTC--
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I

a score=248286.000000
s hg38.chr6_GL000254v2_alt   929508 42 +   4827813 CATCTCCAGGTCTGCACATCTGT---TCAGT---------TACTGAATCC---TGTG
s panTro5.chr6             29892435 42 + 175400573 CATCTCCAGGTCTGCACATCTGT---TCAGT---------TACTGAATCC---TGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30123993 42 + 173848474 CATCTCCAGGTCTGCACATCTGT---TCAGT---------TACTGAATCC---TGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5925700 42 +   6154872 CATCTCCAGGTCTGCACATCTGT---TCAGT---------TACTGAATCC---TGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74642470 42 + 122973662 CGTCTCCACGTCTGCACATCTGT---TCAGT---------TACTGAATCC---TGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30124123 34 + 172585720 T--------GTCTGCACATCTGG---TCAGT---------TACCAAATCC---TGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29787202 34 - 170955103 T--------GTCTGCACATCTGG---TCAGT---------TACCAAATCC---TGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2834706 34 -   2996164 T--------GTCTGCACATCTGG---TCAGT---------TACCAAATCC---TGTG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     584209 34 +    766320 T--------GTCTGCACATCTGG---TCAGT---------TACCAAATCC---TGTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29041096 34 -  71996105 T--------GTCTGCACATCTGG---TCAGT---------TACCAAATCC---TGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     236319 34 +    290775 T--------GTCTGCACATCTGG---TCAGT---------TACCAAATCC---TGTG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679737 34 -   3067355 T--------GTCTGCACATCTGG---TCAGT---------TACCAAATCC---TGTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      54073 45 +    132061 ctactccacatctgcACATATGG---TCACT---------TACTGAATTCTCCTGTG
i calJac3.chrUn_GL286223   I 47 C 0
s saiBol1.JH378388             6814 45 -    110772 CTACTCCATATCTGCACATCTGG---TCACT---------TACTGAATCCTGTTGTG
i saiBol1.JH378388         I 25 C 0
s cebCap1.NW_016107755v1     273378 37 -   1771730 ctactccaTATC--------TGG---TCACT---------TACTGAATCCTACTGTG
i cebCap1.NW_016107755v1   I 25 C 0
s otoGar3.GL873550           156629 28 +  18854210 --------------CATATTTGA---TCAGC---------TATCAAATCC---TGTA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26261084 48 +  26524999 ------CAGCCCCGCACAATGGGGTCTCAGCATTTTTGTGTGCCGCCCCT---TTGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            82577 28 +    102524 --------------CACATCCGG---TCAGC---------TGCCAAATCC---TGTG
i dasNov3.JH582591         C 0 I 550
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e aotNan1.NW_018509740v1     344332 408 -    457564 I

a score=114266.000000
s hg38.chr6_GL000254v2_alt   929550 51 +   4827813 TAAGC--------------TACCTTCTT---------------------TTT--CTTTTttcttttat-------ttatt---------------tatttattttttttt
s panTro5.chr6             29892477 55 + 175400573 TAAGC--------------TACCttctt---------------------ttt--cttttttcttttctttt---ctttct---------------ttttttttttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124035 57 + 173848474 TAAGC--------------TACCTTCTt---------------------ttt--cttttttcttttctttt-tctttttt---------------ttctttttttttttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5925742 58 +   6154872 TAAGC--------------TACCTTCtt---------------------ttt--cttttttcttttcttttttttttttt---------------ttttttttttttttc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74642512 53 + 122973662 TAAGC--------------TACCTTCTT---------------------TTT--Cttttttcttttctttt-----cttt---------------ttttttttttttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30124157 33 + 172585720 TAAGC--------------TACCTTCCt---------------------ttt--ctttctt----------------------------------------ttttttttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29787236 32 - 170955103 TAAGC--------------TACCTTCCt---------------------ttt--ctttct-----------------------------------------ttttttttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2834740 35 -   2996164 TAAGC--------------TACCTTCCt---------------------ttt--ctttctt--------------------------------------tcttttttttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     584243 39 +    766320 TAAGC--------------TACCTTCCt---------------------ttt--ctttctt----------------------------------ttttttttttttttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29041130 36 -  71996105 TAAGC--------------TACCTTCCt---------------------ttt--ctttctt-------------------------------------tctttttttttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     236353 36 +    290775 TAAGC--------------TACCTTCCt---------------------ttt--ctttctt-------------------------------------tttttttttttt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679771 24 -   3067355 TAAGC--------------TACCttctt---------------------t---------------------------------------------------ttttttttt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      54118 26 +    132061 TAAAC--------------TACCttttt---------------------ttc-------------------------------------------------ttttttttt
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             6859 43 -    110772 TAAGC--------------TACCTTttt---------------------ttc--catttta---------------ttta---------------tttatttattttttt
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     273415 32 -   1771730 TAAGC--------------TACCttttt---------------------ttt--cttttt-----------------------------------------tcttttttt
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           156657 96 +  18854210 TCTCC--------------CACCTTCTTAAAAGCTCCAGAAGAgggttctttaacttttttgtgtgtcatgcacctctttagcaaactggtgaaattggtggaccccctt
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26261132 72 +  26524999 TGGACTGCTGGTTAGTGAATGCCTTCTG---------------------TCT--CTCTTTTTTTTTTtttttaatttttt---------------taaacatttttattt
i canFam3.chr35            C 0 I 283
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e aotNan1.NW_018509740v1     344332 408 -    457564 I

a score=62759.000000
s hg38.chr6_GL000254v2_alt   929601 7 +   4827813 tgagatg
s panTro5.chr6             29892532 7 + 175400573 tgagacg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124092 7 + 173848474 tgagacg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5925800 7 +   6154872 tgagacg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74642565 7 + 122973662 tgagatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30124190 7 + 172585720 tgagacg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29787268 7 - 170955103 tgagacg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2834775 7 -   2996164 tgagacg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     584282 7 +    766320 tgagacg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29041166 7 -  71996105 tgagacg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     236389 7 +    290775 tgagacg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679795 7 -   3067355 tgagatg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      54144 7 +    132061 tgaggtg
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             6902 7 -    110772 tgaggcg
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     273447 7 -   1771730 tgaggtg
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           156753 7 +  18854210 tcagaag
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26261204 283 +  26524999 I
e aotNan1.NW_018509740v1     344332 408 -    457564 I

a score=201469.000000
s hg38.chr6_GL000254v2_alt   929608 29 +   4827813 gag------ttttgctcttgttacccaggctggag------------------------------------------------------------
s panTro5.chr6             29892539 29 + 175400573 gag------ttttgctcttgttacccaggctggag------------------------------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124099 30 + 173848474 gagt-----ttttgctcttgttacccaggctggag------------------------------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5925807 29 +   6154872 gag------ttttgctcttgttacccaggctggag------------------------------------------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74642572 35 + 122973662 gagttttgctcttgctcttgttgcccaggctggag------------------------------------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30124197 29 + 172585720 gaa------ttttgctcttgttgcccaggctggag------------------------------------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29787275 29 - 170955103 gaa------ttttgctcttgttgcccaggctggag------------------------------------------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2834782 30 -   2996164 gaat-----ttttgctcttgttgcccaggctggag------------------------------------------------------------
i macNem1.NW_012011356v1   C 0 I 18
s cerAty1.NW_012002711v1     584289 29 +    766320 gaa------ttttgctcttgttgcccaggctggag------------------------------------------------------------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29041173 29 -  71996105 gaa------ttttgctcttgctgcccaggctggag------------------------------------------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     236396 28 +    290775 gaa------ttttgctcttgttgcccaggctgga-------------------------------------------------------------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679802 29 -   3067355 gaa------tttttctcttgttgcccaggctggag------------------------------------------------------------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      54151 29 +    132061 gag------tttccctcttgttgctcaggctggag------------------------------------------------------------
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             6909 29 -    110772 gtg------tttccctcttgttgctcaggctgaag------------------------------------------------------------
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     273454 29 -   1771730 gag------tttccctcttgttgctcaggctggag------------------------------------------------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     344740 28 -    457564 gag------tttcactcttgtcgcccaggatgg-g------------------------------------------------------------
i aotNan1.NW_018509740v1   I 408 C 0
s otoGar3.GL873550           156760 85 +  18854210 ----------aatgctttaaatacacacaataaaacatttatactgaaatataatcatcaaaatattaaaataacaagagttaggatggccctaa
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26261204 283 +  26524999 I

a score=140012.000000
s hg38.chr6_GL000254v2_alt   929637 17 +   4827813 tgcaatggtgcaatctc
s panTro5.chr6             29892568 17 + 175400573 tgcaatggtgcaatctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124129 17 + 173848474 tgcaatggtgcaatctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5925836 17 +   6154872 tgcaatggtgcaatctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74642607 17 + 122973662 tgcaatggtgcgatctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30124226 17 + 172585720 tacaacggtgtgatctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29787304 17 - 170955103 tacaacggtgtgatctt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     584318 17 +    766320 tacaatggtgtgatctt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29041202 17 -  71996105 tgcaatggtgtgatctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     236424 17 +    290775 cacaatggtgtgatctt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679831 17 -   3067355 tgcaatagtgtgatctt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      54180 17 +    132061 tgcaatggtgcgatctc
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             6938 17 -    110772 tgcaatgatacgatctc
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     273483 17 -   1771730 tgcaatggtgtgaactt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     344768 17 -    457564 tgcaatggtgcgatctc
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           156845 17 +  18854210 tgaattagtgtaatttc
i otoGar3.GL873550         C 0 I 92
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26261204 283 +  26524999 I
e macNem1.NW_012011356v1    2834812 18 -   2996164 I

a score=8666.000000
s hg38.chr6_GL000254v2_alt   929654 1 +   4827813 g
s panTro5.chr6             29892585 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124146 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5925853 1 +   6154872 g
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74642624 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30124243 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29787321 1 - 170955103 g
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     584335 1 +    766320 g
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29041219 1 -  71996105 g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     236441 1 +    290775 g
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679848 1 -   3067355 g
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      54197 1 +    132061 g
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             6955 1 -    110772 g
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     273500 1 -   1771730 g
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     344785 1 -    457564 g
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26261204 283 +  26524999 I
e otoGar3.GL873550           156862 92 +  18854210 I
e macNem1.NW_012011356v1    2834812 18 -   2996164 I

a score=284624.000000
s hg38.chr6_GL000254v2_alt   929655 38 +   4827813 gctcactg-caccctccaa-ctcccaggtt-catgcaattc
s panTro5.chr6             29892586 38 + 175400573 gctcactg-caccctccaa-ctcccaggtt-catgcaattc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30124147 39 + 173848474 gctcactgccaccctccaa-ctcccaggtt-catgcaattc
i panPan2.chr6             C 0 I 2630
s gorGor5.CYUI01015250v1    5925854 38 +   6154872 gctcactg-caccctccaa-ctcccaggtt-catgcaattc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74642625 38 + 122973662 gctcactg-caccctccaa-ctcccaggtt-catgcaattc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30124244 37 + 172585720 gctcactg-caaactccaa-ctccca-gtt-cgtgcaattc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29787322 37 - 170955103 gctcactg-caaactccaa-ctccca-gtt-cgtgcaattc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2834830 38 -   2996164 gctcactg-caaactccaa-ctccca-gttccgtgcaattc
i macNem1.NW_012011356v1   I 18 C 0
s cerAty1.NW_012002711v1     584336 37 +    766320 gctcactg-caaactccaa-ctccca-gtt-cgtgcaattc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29041220 37 -  71996105 gctcactg-cgaactccaa-ctccca-gtt-cgtgtaattc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     236442 37 +    290775 gctcactg-caaactccaa-ctccca-gtt-cgtgcaattc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679849 37 -   3067355 gctcactg-caaactccaa-ctccca-gtt-cgtgcaattc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      54198 38 +    132061 gctcacca-caacctccac-cttccaagtt-caagcgattc
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             6956 36 -    110772 gctcac---caacctccac-cttccaagtt-taagcaattc
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     273501 38 -   1771730 gctcaccg-aaacctccac-cttccaagtt-taagcgattc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     344786 39 -    457564 gctaactg-taacctccgcacccccaggtt-caagcaattc
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26261204 283 +  26524999 I
e otoGar3.GL873550           156862 92 +  18854210 I

a score=297072.000000
s hg38.chr6_GL000254v2_alt   929693 37 +   4827813 tcctccct-cagccttccaagta-gctgggatt----acaggc
s panTro5.chr6             29892624 37 + 175400573 tcctccct-cagccttccgagta-gctgggatt----acaggc
i panTro5.chr6             C 0 I 1
s gorGor5.CYUI01015250v1    5925892 37 +   6154872 tcctccct-cagccttccgagta-gctgggatt----acaggc
i gorGor5.CYUI01015250v1   C 0 I 1
s nomLeu3.chr1a            74642663 37 + 122973662 tcctccct-cagccttccgagta-gctgggatt----acaggc
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             30124281 37 + 172585720 tcctccct-cagtctcccaagta-gctgggatt----acaggc
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29787359 37 - 170955103 tcctccct-cagtctcccaagta-gctgggatt----acaggt
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2834868 39 -   2996164 tcctccctccagtctcccaagtatgctgggatt----acaggt
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012002711v1     584373 37 +    766320 tcctccct-cagtctcccaagta-gctgggatt----acaggc
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17            29041257 37 -  71996105 tcctccct-cagtctcccaagta-gctgggatt----acaggc
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012099233v1     236479 37 +    290775 tcctccct-cagtctcccaagta-gctgggatt----acaggc
i manLeu1.NW_012099233v1   C 0 I 1
s colAng1.NW_012115566v1    2679886 37 -   3067355 tcctccct-cagtctcccaagta-gctgggatt----acaggc
i colAng1.NW_012115566v1   C 0 I 3
s calJac3.chrUn_GL286223      54236 41 +    132061 tcctgcct-cagtctccagagta-gctgggattgtagacagac
i calJac3.chrUn_GL286223   C 0 I 1
s saiBol1.JH378388             6992 37 -    110772 tcctgctt-cagcctccagagta-gctgggatt----acagac
i saiBol1.JH378388         C 0 I 1
s cebCap1.NW_016107755v1     273539 37 -   1771730 tcctgcct-cagcctccagagta-gctgggatt----acagac
i cebCap1.NW_016107755v1   C 0 I 316
s aotNan1.NW_018509740v1     344825 36 -    457564 ttctgc-t-cagcctcccaagta-gctgggatt----acaggt
i aotNan1.NW_018509740v1   C 0 I 1
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26261204 283 +  26524999 I
e otoGar3.GL873550           156862 92 +  18854210 I
e panPan2.chr6             30124186 2630 + 173848474 I

a score=424185.000000
s hg38.chr6_GL000254v2_alt   929730 67 +   4827813 tgcaccaccatgtctggctaatttttgtatt-atcagtagagagagggtttc-accatgttggccaagc
s panTro5.chr6             29892662 67 + 175400573 tgcaccaccatgtctggctaatttttgtatt-atcagtagagacagggtttc-accatgttggccaagc
i panTro5.chr6             I 1 C 0
s gorGor5.CYUI01015250v1    5925930 67 +   6154872 tgcaccaccatgtctggctaatttttgtatt-atcagtagagacagggtttc-accatgttggccaagc
i gorGor5.CYUI01015250v1   I 1 C 0
s nomLeu3.chr1a            74642701 66 + 122973662 tgcaccaccatgtctggc-aatttttgtatt-atcagtagagacagggtttc-accatgttggccaggc
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30124319 67 + 172585720 tgcacaaccatgcctggctaatttttgtatt-atcagtagagacagggtttt-tccatgttggccaggc
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29787397 67 - 170955103 tgcacaaccatgcctggctaatttttgtatt-atcagtagagacagggtttt-tccatgttggccaggc
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2834908 67 -   2996164 tgcacaaccatgcctgg-taatttttgtattgatcagtagagacagggttttaaccatgtt-gccaggc
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1     584411 67 +    766320 tgcacaaccatgcctggctaatttttgtatt-atcagtagagacagggtttt-accatgttggccaggc
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17            29041295 67 -  71996105 tgcacaaccatgcctggctaatttttatatt-atcagtagagacagggtttt-accatgttggccaggc
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012099233v1     236517 67 +    290775 tgcacaaccatgcctggctaatttttgtatt-atcagtagagacagggtttt-accatgttggccaggc
i manLeu1.NW_012099233v1   I 1 C 0
s calJac3.chrUn_GL286223      54278 66 +    132061 tgtgccaccatacccggctaattttc-tatt-tttagtagaggtagggtttc-tccatgttggtcaggt
i calJac3.chrUn_GL286223   I 1 C 0
s saiBol1.JH378388             7030 66 -    110772 tgtgccaccacacccagctatttttc-tatt-tttggtagaggcagggtttc-tccatattagtcaggt
i saiBol1.JH378388         I 1 C 0
s cebCap1.NW_016107755v1     273892 67 -   1771730 tacaccaccccacctggctaatttttgtatt-attagtagagacagggtttc-acaatattggccaggg
i cebCap1.NW_016107755v1   I 316 I 30
s aotNan1.NW_018509740v1     344862 67 -    457564 tacaccaccacacctagctaatttttgtatt-attagtagagacagcatttc-acaatgttggccaggc
i aotNan1.NW_018509740v1   I 1 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26261204 283 +  26524999 I
e otoGar3.GL873550           156862 92 +  18854210 I
e colAng1.NW_012115566v1    2679923  3 -   3067355 I
e panPan2.chr6             30124186 2630 + 173848474 I

a score=37010.000000
s hg38.chr6_GL000254v2_alt   929797  8 +   4827813 cgg--tctcg
s panTro5.chr6             29892729  8 + 175400573 cgg--tctcg
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5925997  8 +   6154872 cgg--tctcg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74642767  8 + 122973662 cgg--tctcg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30124386  8 + 172585720 cag--tctcg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29787464  8 - 170955103 cag--tctcg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2834975 10 -   2996164 caggtcctcg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     584478  8 +    766320 cag--tctcg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29041362  8 -  71996105 cag--tctcg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     236584  8 +    290775 cag--tctcg
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      54344  8 +    132061 tgg--tttca
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             7096  8 -    110772 tgg--tcttg
i saiBol1.JH378388         C 0 C 0
s aotNan1.NW_018509740v1     344929  8 -    457564 tag--tttca
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26261204 283 +  26524999 I
e otoGar3.GL873550           156862 92 +  18854210 I
e cebCap1.NW_016107755v1     273959 30 -   1771730 I
e colAng1.NW_012115566v1    2679923  3 -   3067355 I
e panPan2.chr6             30124186 2630 + 173848474 I

a score=627975.000000
s hg38.chr6_GL000254v2_alt   929805 109 +   4827813 aac-tcctgacctcaagt---gatccacccaccttgg-cctcccaaaatgctgggattacaggtgtgagccacca-tgcccg-CTGTA-AACT--ACCTTCTTAAAAG---CTCTAGAAGAg
s panTro5.chr6             29892737 109 + 175400573 aac-tcctgacctcaagt---gatccacccaccttgg-cctcccaaaatgctgggattacaggtgtgagccaccg-tgcccg-CTGTA-AATT--ACCTTCTTAAAAG---CTCTAGAAGAg
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5926005 109 +   6154872 aac-tcctgacctcaagt---gatccacccaccttgg-cctcccaaaatgctgggattacaggtgtgagccaccg-tgcccg-CTGTA-AACT--ACCTTCTTAAAAG---CTCTAGAAGAg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74642775 109 + 122973662 aac-tcctgacctcaagt---gatccacccaccttgg-cctcccaaaatgctgggattacaggtgtgagccaccg-cgcccg-CTGTA-AACT--ACCTTCTTAAAAG---CTCTAGAAGAg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30124394 109 + 172585720 aac-tcctgacctcacgt---gatccacccaccttgg-cctcccaaaatgttgggattacaggcgtgagccaccg-cgcccg-CTGTA-AACT--ACCTTCTTAAAAG---CTCTAGAAGAg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29787472 109 - 170955103 aac-tcctgacctcacgt---gatccacccaccttgg-cctcccaaaatgttgggattacaggcgtgagccaccg-cgcccg-CTGTA-AACT--ACCTTCTTAAAAG---CTCTAGAAGAg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2834985 120 -   2996164 aacatcctgacctcaggttgaaatccacccaccttggtcctcccaaaatgttgggattacaggcgtga-ccaccgccgcccg-CTGTACAACTCAACCTTACTATAAAAGCCTACAGAAGAg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     584486 109 +    766320 aac-tcctgacctcaggt---gatccacccaccttgg-cctcccaaaatgttgggattacaggcgtgagccactg-cgcccA-CTGTA-AACT--ACCTTCTTAAAAG---CTCTAGAAGAg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29041370 109 -  71996105 aac-tcctgacctcaggt---gatccacccaccttgg-cctcccaaaatgttgggattacaggcgtgagccacca-cgcccA-CTGTA-AACT--ACCTTCTTAAAAG---TTCTAGAAGAg
i chlSab2.chr17            C 0 I 322
s manLeu1.NW_012099233v1     236592 109 +    290775 aac-tcctgacctcaggt---gatccacccaccttgg-cctcccaaaatgttgggattacaggcgtgagccactg-cacccg-CTGTA-AACT--ACCTTCTTAAAAG---CTCTAGAAGAg
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      54352  76 +    132061 aac-tcttgacctcaggt---aatctggccacctcag-cctcccaaaat-ctgggattataggtgtgagccacca-cgcccga---------------------------------------
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             7104  89 -    110772 aac-tgccgacttcaggt---aatcctcctgcctcag-cctcctaaagtgctgggattacaggcatgagctacca-cacccggcTGAG-ACCC--CCC------------------------
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     273989 110 -   1771730 aac-tcctgacctcaggt---gacccacctgcctcgg-cctcccaaagtgctgggattacagacatgagccacaa-tgcctgacTGTA-AACT--ACCTTCTTAAAAG---CTCTAGAAGgg
i cebCap1.NW_016107755v1   I 30 C 0
s aotNan1.NW_018509740v1     344937 109 -    457564 aac-tcctgacctcaggt---gacccacctgcctcgg-cctcccaaagtgctaggattacaggcgtgagccac-A-TGCCTGACTGCA-AACT--ACCTTCTTAAAAG---CTCTAGAAGgg
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26261204 283 +  26524999 I
e otoGar3.GL873550           156862  92 +  18854210 I
e colAng1.NW_012115566v1    2679923   3 -   3067355 I
e panPan2.chr6             30124186 2630 + 173848474 I

a score=302570.000000
s hg38.chr6_GL000254v2_alt   929914 82 +   4827813 ggcttttaaccttttg-ttgtgtgtcatgcaccttccgcaagctgatgaagttga--tag-a-cccatctcagaa-----tttttttttttt
s panTro5.chr6             29892846 84 + 175400573 ggctcttaaccttttg-ttgtgtgtcatgcaccttccgcaagctgatgaagttga--tag-accccatctcagaa----ttttttttttttt
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5926114 85 +   6154872 ggctcttaaccttttg-ttgtgtgtcatgcaccttccgcaagctgatgaagttga--tag-accccatctcagaa---tttttttttttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74642884 85 + 122973662 ggctcttaaccttttg-ttgtgtgtcatgcaccttcggcaagctgatgaagttga--tag-accccatctcagaa---tttttttttttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30124503 85 + 172585720 ggctcttaaccttttg-ttgtgtgttatgcacctttggcaagctgatgaagttga--tag-accccatctcagaa---tttttttttttttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29787581 87 - 170955103 ggctcttaaccttttg-ttgtgtgttatgcacctttggcaagctgatgaagttga--tag-accccatctcagaatt-tttttttttttttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2835105 87 -   2996164 ggctcttaaccttttgtttgtgtgttatgcacc-ttggcaagctgatgaacttgaattagaatcccatctcaga----tttttttttttttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     584595 86 +    766320 ggctcttaaccttttg-ttgtgtgttatgcacctttggcaagttgatgaagttga--tag-accccatctcagaat--tcttttttctattt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29041801 86 -  71996105 ggctcttaaccctttg-ttgtgtattatgcaccttcagcaagctgatgaagttga--tag-accccatctcagaat--tcttttttttattt
i chlSab2.chr17            I 322 C 0
s manLeu1.NW_012099233v1     236701 86 +    290775 ggctcttaaccttttg-ttgtgtgttatgcacctttggcaagctgatgaagttga--tag-accccatctcagaat--tcttttttttattt
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      54428  9 +    132061 ------------------------------------------------------------------------------ctttttttt-----
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             7193 18 -    110772 --CACCCGACC-------------------------------------------------------------------Cttttttct-----
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     274099 82 -   1771730 ggctcttaaccatttt-ttgtgtgtcatgcacctttggcatgctgatgaagctga--tag-a-cGCATCTCATTATTATTTTttttt-----
i cebCap1.NW_016107755v1   C 0 I 1967
s aotNan1.NW_018509740v1     345046 83 -    457564 ggctcgtaaccatttt-ttgtgtgtcatgcacctttggcacactgataaagctga--tag-accccatctcagaattattttttaTt-----
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26261204 283 +  26524999 I
e otoGar3.GL873550           156862 92 +  18854210 I
e colAng1.NW_012115566v1    2679923  3 -   3067355 I
e panPan2.chr6             30124186 2630 + 173848474 I

a score=21609.000000
s hg38.chr6_GL000254v2_alt   929996 4 +   4827813 tttt
s panTro5.chr6             29892930 4 + 175400573 tttt
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5926199 4 +   6154872 tttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74642969 4 + 122973662 tttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30124588 4 + 172585720 tttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29787668 4 - 170955103 tttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2835192 4 -   2996164 tttc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     584681 4 +    766320 tttc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29041887 4 -  71996105 tttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     236787 4 +    290775 tttc
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      54437 4 +    132061 tttt
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             7211 4 -    110772 tttg
i saiBol1.JH378388         C 0 C 0
s aotNan1.NW_018509740v1     345129 4 -    457564 tttt
i aotNan1.NW_018509740v1   C 0 I 1824
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26261204 283 +  26524999 I
e otoGar3.GL873550           156862 92 +  18854210 I
e cebCap1.NW_016107755v1     274181 1967 -   1771730 I
e colAng1.NW_012115566v1    2679923 3 -   3067355 I
e panPan2.chr6             30124186 2630 + 173848474 I

a score=16731.000000
s hg38.chr6_GL000254v2_alt   930000 3 +   4827813 gag
s panTro5.chr6             29892934 3 + 175400573 gag
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5926203 3 +   6154872 gag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74642973 3 + 122973662 gag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30124592 3 + 172585720 gag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29787672 3 - 170955103 gag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2835196 3 -   2996164 gag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     584685 3 +    766320 gag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29041891 3 -  71996105 gag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     236791 3 +    290775 gag
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      54441 3 +    132061 gac
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             7215 3 -    110772 gag
i saiBol1.JH378388         C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26261204 283 +  26524999 I
e otoGar3.GL873550           156862 92 +  18854210 I
e aotNan1.NW_018509740v1     345133 1824 -    457564 I
e cebCap1.NW_016107755v1     274181 1967 -   1771730 I
e colAng1.NW_012115566v1    2679923 3 -   3067355 I
e panPan2.chr6             30124186 2630 + 173848474 I

a score=1385988.000000
s hg38.chr6_GL000254v2_alt   930003 245 +   4827813 acagtgtctc--actc-tgtc--acccaggattggttgcagtggc-acgatcatggctcattgcagcc--tccacctccc-aggctcaagtgatcctcctgactcagcctcttgaatagctgagaccacaggcttgtgtcaccatgcccaggtaatttttaattttttttcgtagaggcagggtctcacattatgttgccca-----------------------gtctggcctcgagaactcctgggctcaagcaatcttcctgccttggcctccc
s panTro5.chr6             29892937 245 + 175400573 acagtgtctc--actc-tgtc--acccaggattggttgcagtggc-acgatcatggctcattgcagcc--tccacctccc-aggctcaagtgatcctcctgactcagcctcttgaatagctgagaccacaggcttgtgtcaccatgcccagctaatttttaattttttttcatagaggcagggtctcacattatgttgccca-----------------------gtctggccttgagaactcctgggctcaagcaatcttcctgccttggcctccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30126816 243 + 173848474 acagtgtctc--actc-tgtc--acccaggattggttgcagtggc-acgatcatggctcattgcagcc--tccacctccc-aggctcaagtgatcctcctgactcagcctcttgaatagctgagaccacaggcttgtgtcaccatgcccagctaatttt--aatttttttcatagaggcagggtctcacattatgttgccca-----------------------gtctggccttgagaactcctgggctcaagcaatcttcctgccttggcctccc
i panPan2.chr6             I 2630 C 0
s gorGor5.CYUI01015250v1    5926206 245 +   6154872 acagtgtctc--actc-tgtc--acccaggattggttgcagtggc-acgatcatggctcattgcagcc--tccacctccc-aggctcaagtgatcctcctgactcagcctcttgaagagctgagaccacaggcttgtgtcaccatgcccagctaatttttaattttttttcatagaggcagggtctcacattatgttgccca-----------------------gtctggccttgagaactcctgggctcaagcaatcttcctgccttggcctccc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74642976 231 + 122973662 acagtgtctc--actc-tgtc--acccaggatgggttgcagtggc-acgatcatggctcattgcagcc--ttcacctccc-aggctcaagtgatcctcctgactt-------------gctgagaccacaggcttgtgccaccatgcccagctaatttttaattttttttcatagaggcagggtctcacactatgttgccca-----------------------gtctggcctcgagaactcctgggctcaagcaatcttcctgcc-tggcctccc
i nomLeu3.chr1a            C 0 M 100
s rheMac8.chr4             30124595 245 + 172585720 tcagggtctc--actc-tgtc--acccagaatgggttgcagtggc-acgatcatggctcatggcagcc--tctacctccc-aggctcaagtgatccttctggctcagcctcttgaatagctgagaccacaggcttgtgccaccatgcccggctaatttttaattttttttcgtagaggcagggtctcacactatgttgccca-----------------------gtctggtctcgagaactcctgggctcaagcaatcttcttgccttggcctccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29787675 245 - 170955103 tcagggtctc--actc-tgtc--acccagaatgggttgcagtggc-acgatcatggctcatggcagcc--tctacctccc-aggctcaagtgatccttctggctcagcctcttgaatagctgagaccacaggcttgtgccaccatgcccggctaatttttaattttttttcgtagaggcagggtctcacactatgttgccca-----------------------gtctggtctcgagaactcctgggctcaagcaatcttcttgccttggcctccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2835199 251 -   2996164 tcagggtcctcaactc-tgtccaacccagaatgggtt-cagtggctacgatcaccggctat-gcagccctcctacctcccaaggctcaagtgacccttctggctcagcctcttgaatagctgagaccacaggcttgtgccaccatgcccggctaatttttaattttttttcgtagaggcagggtctcacactatgttgccca-----------------------gtctggtctcgagaactcctgggctcaagcaatcttcttgccttggcctccc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     584688 242 +    766320 tcagggtctc--actc-tgtc--acccagaatgggttgcagtggc-acgatcatggctcatggcagcc--tctacctctc-aggctcaagtgatccttctggctcaacctcttgaatagctgagaccacaggcttgtgccaccatggccggctaatttttaattttttttcgtagaggcagggtctcacactatgttgccca-----------------------gtctggtctcgagaactcctgggctcaagcaa---tcttgccttggcctccc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29041894 242 -  71996105 tcagggtctc--actc-tgtc--acccagaatgggttgcagtggc-atgatcatggctcatggcagcc--tctacctccc-aggctcaagtgatccttctggctcagcctcttgaatagctgagaccacaggtttgtgccaccatgcccggctaatttttgattttttttcgtagaggtggggtctcacactatgttgccca-----------------------gtctggtctcaagaactcctgggctcaagcaa---tcttgccttggcctccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     236794 242 +    290775 tcaaggtctc--actc-tgtc--acccagaatgggttgcagtggc-acgatcatggctcatggcagcc--tctacctccc-aggctcaagtgatccttctggctcaacctcttgaatagctgagaccacaggcttgtgccaccatgcccggctaatttttaattttttttcgtagaggcagagtctcacactatgttgccca-----------------------gtctggtctcgagaactcctgggctcaagcaa---tcttgccttggcctccc
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      54444 242 +    132061 acagggtgtc--attc-tgtc--acccaggatggggtgcggtgac-atgatcatggctcattgcagcc--tccacctccc-aggcttaagtgattttcttgactcagcctcttgaatagctgagaccacaggcttgtgccaccatgcccagctattttttaaa-tttttttgtagtggaagggtctcac--tatgttgccca-----------------------agctggtctcaagaacgcctgagctcaagcagtcttcttgccttggccttcc
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             7218 257 -    110772 acggagtttc--gctcttgtc--gcccaggctggtgtgcaatggt-gcgacctcggttcactgtaacc--tccaccccag-aggttcaagcagttct----gctcagcctcccgagtagctgagattacaggtgtacaccaccacacctggctaatttttgta--ttattagtagagacagggtttcac--aatgttggccagggtgcagtgttggatggggtgcagttggtc----aaactcctgacctcaggtgacccacctgcctcggcctccc
i saiBol1.JH378388         C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26261204 283 +  26524999 I
e otoGar3.GL873550           156862  92 +  18854210 I
e aotNan1.NW_018509740v1     345133 1824 -    457564 I
e cebCap1.NW_016107755v1     274181 1967 -   1771730 I
e colAng1.NW_012115566v1    2679923   3 -   3067355 I

a score=142569.000000
s hg38.chr6_GL000254v2_alt   930248 26 +   4827813 aaagtggtgggattacaggggagagc
s panTro5.chr6             29893182 26 + 175400573 aaagtggtgggattacaggggagagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127059 26 + 173848474 aaagtggtgggattacaggggagagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5926451 26 +   6154872 aaagtggtgggattacaggggagagc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30124840 26 + 172585720 aaagtggtaggattacaggggagagc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29787920 26 - 170955103 aaagtggtgggattacaggggagagc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2835450 26 -   2996164 aaagtggtaggattacaggggagagc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     584930 26 +    766320 aaagtggtgggattacaggggagagc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29042136 26 -  71996105 aaagtggtgggattacaggggagagt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237036 26 +    290775 aaagtggtgggattacaggggagagc
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      54686 26 +    132061 aaggtggtgggattacaggcattagc
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             7475 26 -    110772 aaagtgctgggattacagacgtgagc
i saiBol1.JH378388         C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26261204 283 +  26524999 I
e otoGar3.GL873550           156862 92 +  18854210 I
e aotNan1.NW_018509740v1     345133 1824 -    457564 I
e cebCap1.NW_016107755v1     274181 1967 -   1771730 I
e colAng1.NW_012115566v1    2679923  3 -   3067355 I
e nomLeu3.chr1a            74643207 100 + 122973662 M

a score=22698.000000
s hg38.chr6_GL000254v2_alt   930274 3 +   4827813 cac
s panTro5.chr6             29893208 3 + 175400573 cac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127085 3 + 173848474 cac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5926477 3 +   6154872 cac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74643307 3 + 122973662 CAC
i nomLeu3.chr1a            M 100 C 0
s rheMac8.chr4             30124866 3 + 172585720 cac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29787946 3 - 170955103 cac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2835476 3 -   2996164 cac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     584956 3 +    766320 cac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29042162 3 -  71996105 cac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237062 3 +    290775 cac
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      54712 3 +    132061 cac
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             7501 3 -    110772 cac
i saiBol1.JH378388         C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26261204 283 +  26524999 I
e otoGar3.GL873550           156862 92 +  18854210 I
e aotNan1.NW_018509740v1     345133 1824 -    457564 I
e cebCap1.NW_016107755v1     274181 1967 -   1771730 I
e colAng1.NW_012115566v1    2679923 3 -   3067355 I

a score=99834.000000
s hg38.chr6_GL000254v2_alt   930277 15 +   4827813 cacacctagccagaa
s panTro5.chr6             29893211 15 + 175400573 cacacctaaccagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127088 15 + 173848474 cacaccTAACCAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5926480 15 +   6154872 cacacctaaccagaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74643310 15 + 122973662 CACACCTAGCCAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30124869 15 + 172585720 cacacctagccagaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29787949 15 - 170955103 cacacctagccagaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2835479 15 -   2996164 cacacctagccagaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     584959 15 +    766320 cacacctagccagaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29042165 15 -  71996105 cacacatagccagaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237065 15 +    290775 cacacctagccagaa
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      54715 15 +    132061 cacacctagccAGAA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388             7504 15 -    110772 aatgcctgacTATAA
i saiBol1.JH378388         C 0 I 3469
s canFam3.chr35            26261487 15 +  26524999 Catcccttctcagaa
i canFam3.chr35            I 283 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e otoGar3.GL873550           156862 92 +  18854210 I
e aotNan1.NW_018509740v1     345133 1824 -    457564 I
e cebCap1.NW_016107755v1     274181 1967 -   1771730 I
e colAng1.NW_012115566v1    2679923  3 -   3067355 I

a score=200292.000000
s hg38.chr6_GL000254v2_alt   930292 33 +   4827813 gaatgttttaaatacaccaaataaaacatttat--
s panTro5.chr6             29893226 33 + 175400573 gaatgttttaaatacaccaaataaaacattaat--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127103 33 + 173848474 GAATGTTTTAAATACACCAAATAAAACATTAAT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5926495 33 +   6154872 gaatgttttaaatacaccaaataaaacattaat--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74643325 33 + 122973662 GAATGTTTTAAATACACCAAATAAAACATTTAT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30124884 33 + 172585720 gaatgttttaaatataccaaataaaacatttat--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29787964 33 - 170955103 gaatgttttaaatataccaaataaaacatttat--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2835494 33 -   2996164 gaatgttttaaatataccaaataaaacatttat--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     584974 33 +    766320 gaatgttttaaatataccaaataaaacatttat--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29042180 33 -  71996105 gaatgttttaaatataccaaataaaacatttat--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237080 33 +    290775 gaatgttttaaatataccaaataaaacatttat--
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      54730 33 +    132061 Gaatattttaaatacataaaataaaaaatttat--
i calJac3.chrUn_GL286223   C 0 I 2400
s canFam3.chr35            26261502 35 +  26524999 ggatgctttaaatgcattaaataaaacatatttgc
i canFam3.chr35            C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             7519 3469 -    110772 I
e otoGar3.GL873550           156862 92 +  18854210 I
e aotNan1.NW_018509740v1     345133 1824 -    457564 I
e cebCap1.NW_016107755v1     274181 1967 -   1771730 I
e colAng1.NW_012115566v1    2679923  3 -   3067355 I

a score=82742.000000
s hg38.chr6_GL000254v2_alt   930325 15 +   4827813 accaaaatacagtta
s panTro5.chr6             29893259 15 + 175400573 accaaaatacagtta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127136 15 + 173848474 ACCAAAATACAGtta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5926528 15 +   6154872 accaaaatacagtta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74643358 15 + 122973662 ACCAAAATACAGtta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30124917 15 + 172585720 accaaaatacagtca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29787997 15 - 170955103 accaaaatacagtca
i macFas5.chr4             C 0 I 1599
s macNem1.NW_012011356v1    2835527 15 -   2996164 accaaaatacagtca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585007 15 +    766320 accaaaatacagtca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29042213 15 -  71996105 accaaaatacagtca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237113 15 +    290775 accaaaatacagtca
i manLeu1.NW_012099233v1   C 0 C 0
s canFam3.chr35            26261537 15 +  26524999 actgaaacacagcta
i canFam3.chr35            C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             7519 3469 -    110772 I
e otoGar3.GL873550           156862 92 +  18854210 I
e aotNan1.NW_018509740v1     345133 1824 -    457564 I
e cebCap1.NW_016107755v1     274181 1967 -   1771730 I
e calJac3.chrUn_GL286223      54763 2400 +    132061 I
e colAng1.NW_012115566v1    2679923  3 -   3067355 I

a score=211749.000000
s hg38.chr6_GL000254v2_alt   930340 42 +   4827813 tcaaaatattaaattaacaagagttagggtgaccctattaat
s panTro5.chr6             29893274 42 + 175400573 tcaaaatattaaattaacaagagttagggtggccctattaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127151 42 + 173848474 tcaaaatattaaattaacaagagttagggtggccctattaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5926543 42 +   6154872 tcaaaatattaaattaacaagagttagggtggccctattaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74643373 42 + 122973662 tcaagatattaaattaacaagagttagggtggccctagtaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30124932 42 + 172585720 tcaaaatattaaattaacaagagttagtgttgccctagtaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29789611 42 - 170955103 TCAAAATattaaattaacaagagttagtgttgccctagtaat
i macFas5.chr4             I 1599 C 0
s macNem1.NW_012011356v1    2835542 42 -   2996164 tcaaaatattaaattaacaagagttagtgttgccctagtaat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585022 42 +    766320 tcaaaatattaaattaacaagagttagggttgccctagtaat
i cerAty1.NW_012002711v1   C 0 I 28
s chlSab2.chr17            29042228 42 -  71996105 tcaaaatattaaattaacaagagttagggttgccctagtaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237128 42 +    290775 tcaaaatattaaattaacaagagttagggttgccctagtaat
i manLeu1.NW_012099233v1   C 0 I 28
s canFam3.chr35            26261552 42 +  26524999 tcaaaatgtGGCAATAACAAGATAGGGAGTGTCCTTGATAAT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             7519 3469 -    110772 I
e otoGar3.GL873550           156862 92 +  18854210 I
e aotNan1.NW_018509740v1     345133 1824 -    457564 I
e cebCap1.NW_016107755v1     274181 1967 -   1771730 I
e calJac3.chrUn_GL286223      54763 2400 +    132061 I
e colAng1.NW_012115566v1    2679923  3 -   3067355 I

a score=94044.000000
s hg38.chr6_GL000254v2_alt   930382 25 +   4827813 tagtgtaatttcaaaatagtaatga
s panTro5.chr6             29893316 25 + 175400573 tagtgtaatttcaaaatagtaatga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127193 25 + 173848474 tagtgtaatttcaaaatagtaatga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5926585 25 +   6154872 tagtgtaatttcaaaatagtaatga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74643415 25 + 122973662 tagtgtaatttcaaaatagtaatga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30124974 25 + 172585720 tagtgtaatttcaaaatagtaatgt
i rheMac8.chr4             C 0 I 26
s macFas5.chr4             29789653 25 - 170955103 tagtgtaatttcaaaatagtaatgt
i macFas5.chr4             C 0 I 26
s macNem1.NW_012011356v1    2835584 25 -   2996164 tagtgtaatttcaaaatagtaatgt
i macNem1.NW_012011356v1   C 0 I 26
s chlSab2.chr17            29042270 25 -  71996105 tagtgtaatttcaaaatagtaatgt
i chlSab2.chr17            C 0 I 26
s canFam3.chr35            26261594 25 +  26524999 TGGTGTAATTTCAAAAAAGTGGTGA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             7519 3469 -    110772 I
e otoGar3.GL873550           156862 92 +  18854210 I
e aotNan1.NW_018509740v1     345133 1824 -    457564 I
e cebCap1.NW_016107755v1     274181 1967 -   1771730 I
e calJac3.chrUn_GL286223      54763 2400 +    132061 I
e colAng1.NW_012115566v1    2679923  3 -   3067355 I
e manLeu1.NW_012099233v1     237170 28 +    290775 I
e cerAty1.NW_012002711v1     585064 28 +    766320 I

a score=4506.000000
s hg38.chr6_GL000254v2_alt   930407 2 +   4827813 ac
s panTro5.chr6             29893341 2 + 175400573 ac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127218 2 + 173848474 ac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5926610 2 +   6154872 ac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74643440 2 + 122973662 ac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125025 2 + 172585720 ag
i rheMac8.chr4             I 26 C 0
s macFas5.chr4             29789704 2 - 170955103 ag
i macFas5.chr4             I 26 C 0
s macNem1.NW_012011356v1    2835635 2 -   2996164 ag
i macNem1.NW_012011356v1   I 26 C 0
s cerAty1.NW_012002711v1     585092 2 +    766320 ag
i cerAty1.NW_012002711v1   I 28 C 0
s chlSab2.chr17            29042321 2 -  71996105 ag
i chlSab2.chr17            I 26 C 0
s manLeu1.NW_012099233v1     237198 2 +    290775 ag
i manLeu1.NW_012099233v1   I 28 C 0
s canFam3.chr35            26261619 2 +  26524999 AC
i canFam3.chr35            C 0 I 331
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             7519 3469 -    110772 I
e otoGar3.GL873550           156862 92 +  18854210 I
e aotNan1.NW_018509740v1     345133 1824 -    457564 I
e cebCap1.NW_016107755v1     274181 1967 -   1771730 I
e calJac3.chrUn_GL286223      54763 2400 +    132061 I
e colAng1.NW_012115566v1    2679923 3 -   3067355 I

a score=1482814.000000
s hg38.chr6_GL000254v2_alt   930409 335 +   4827813 ataagtgatagtttgagatttctgtgacttttctaatgtgacgtgaaaatatttgtgattt--ttctttttc------ttttttttttttgagatggagtttcgctcttgttgcccaggctggagtgcaatggcaagatctcggctcacctcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcttgagt--------------------agctgggattacaggactgtgccaccacgtccagctaattttgtat-ttttagtagaaacagggtttctccatgttggtcaggctggtcttgaactcccaacctcaggcgatccgcccgcctcggcctcccaaagtgctggg
s panTro5.chr6             29893343 336 + 175400573 ataaatgatagtttgagatttctgtgacttttctaatgtgacatgaaaatatttgtgattt--ttctttttt------ttttttttttttgagatggagtttcgctcttgttgcccaggctggagtgcaatggcaagatctcggctcaccacaacctccgcctcctgggttcaagcgattctcctgcctcagtctctcaagt--------------------agctgggattactggcatgtgccaccacgcctagctaattttgtatcttttagtagagacggggtttctccatgttgatcaggctggtctcgaactcccaacctcaggcaatctgcccgcctcggcctcccaaagtgctggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127220 334 + 173848474 ataagtgatagtttgagatttctgtgacttttctaatgtgacatgaaaatatttgtgattt--ttctttt--------ttttttttttttgagatggagtttcgctcttgttgcccaggctggagtgcaatggcaagatctcggctcaccacaacctccgcctcctgggttcaagcgattctcctgcctcagtctctcaagt--------------------agctgggattactggcatgtgccaccacgcctagctaattttgtatcttttagtagagacagggtttctccatgttgatcaggctggtctcaaactcccaacctcaggcgatctgcccgcctcggcctcccaaagtgctggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5926612 338 +   6154872 ataagtgatagtttgagatttctgtgacttttctaatgtgacatgaaaatatttgtgattt--ttctttttc---tt-ttttttttttttgagatggagtttcgctcttgttgcccaggctggagtgcaatggcaagatctcggctcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagtctctcaagt--------------------agctgggattactggcatgtgccaccacgcctagctaattttgtattttttagtagagacggggtttctccgtgttgatcaggctggtctcgaactcccaacctcaggcgatccgcccgcctcggcctcccaaagtgctggg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74643442 340 + 122973662 ataagcgatagtttgagatttctgtgacttttctaatgtgacatgaaaatatttgtgattt--ttctttcttttttt-ttttttttttttgaaatggcgtttcgctcttgttgcccaggctggagtgcaatggcaagatctcggctcaccgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctctcgagt--------------------agctgggattacaagaatgtgccaccacgtccggctaattttgtat-ttttagtagagacaggttttctccatgttggtcaggctagtctcgaactcccaacctcaggcgatccgcccgcctcggcctcccaaagtgctggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125027 335 + 172585720 ataagtgatagtttgagatttctgtgacttttctaatgtgatatgaaaatatttg--------tgatttttt----t-ttttttttttttgagacggagtttcgctcttgttgccctggctggagtgcaatggcatgatctcagctcaccgcaacctccgcctcccgggttcaagtgattctcctgcctcagcctctcgagtnnnnnnnnnnnnnnnnnnnn---------------catgcgccaccatgcccagctaattttgtat-ttttagtggagacggggtttctccatgttaatcaggctggtctcgaactcccgacctcaggtgatccacccgcctcggcctcccaaagtgctggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29789706 338 - 170955103 ataagtgatagtttgagatttctgtgacttttctaatgtgatatgaaaatatttgtgatttttttttttttt----t-ttttttttttttgagacggagtttcgctcttgttgccctggctggagtgcaatggcatgatctcagctcaccgcaacctccgcctcccgggttcaagtgattctcctgcctcagcctctcgagt--------------------agctgggattacaggcatgcgccaccatgcccagctaattttgtat-ttttagtagagacggggtttctccatgttaatcaggctggtctcgaactcccgacctcaggtgatccacccacctcggcctcccaaagtgctggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2835637 330 -   2996164 atatgtgatagtttgagatttctgtgacttttctaatgtgatatgaaaatatttg--------ttttttttt----t-ttttttttttttgagacggagtttcgctcttgttgccctggctggagtgcaatggcatgatctcagctcaccgcaacctccgcctcccgggttcaagtgattctcctgcctcagcctctcgagt--------------------agctgggattacaggcatgcgccaccatgcccagctaattttgtat-ttttagtggagacggggtttctccatgttaatcaggctggtctcgaactcccgacctcaggtgatccacccgcctcggcctcccaaagtgctggc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585094 336 +    766320 ataagtgatagtttgagatttctgtgacttttctaatgtgatataaaaatatttgtgattt--ttatttatt----t-atttatttattttagatggagtttcgctcttgttgcccaggctggggtgcaatggcatgatctcagttcaccgcaacctccgcctcccgggttcaagcgattctcctgcctcagcccctcgagt--------------------agctgggattacaggcatgcgccaccatgcccagctaattttgtat-ttttagtagagacagggtttctccatgttgatcaggctggtcttgaactcccgacctcagctgatccacccacctcggcctcccaaagtgctggg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29042323 326 -  71996105 ataagtgatagtttgagatttctgtgacttttctaatgtgatatgaaaatatttgtggttt-----------------ttttttttttttgtgacggagtttcgctcttgttgcccaggctggagtgcaatggcatgatctcagctcaccgcaacctccgcctcccgggttcaagcgattctcctgcctcagcctctcgagt--------------------agctgggattacaggcatgcaccaccatgcccagctaattttgtat-ttttagtagagacggggtttctccatgttgatcaggctggtctcgaactcccgacctcaggtgatccacccgcctcggcctcccaaagtgctggg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237200 337 +    290775 ataagtgatagtttgagatttctgtgacttttctaatgtgatataaaaatatttgtgattt--ttatttatt----tatttatttatttttagatggagtttcgctcttgttgcccaggctggggtgcaatggcatgatctcagttcaccgcaacctccgcctcccgggttcaagcgattctcctgcctcagcccctcgagt--------------------agctgggattacaggcatgcaccaccatgcccagctaattttgtat-ttttagtagagacggggtttctccatgttgatcaggctggtctcgaactctcgacctcaggtgatccacccacctcggcctcccaaagtgctggg
i manLeu1.NW_012099233v1   C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26261621 331 +  26524999 I
e saiBol1.JH378388             7519 3469 -    110772 I
e otoGar3.GL873550           156862  92 +  18854210 I
e aotNan1.NW_018509740v1     345133 1824 -    457564 I
e cebCap1.NW_016107755v1     274181 1967 -   1771730 I
e calJac3.chrUn_GL286223      54763 2400 +    132061 I
e colAng1.NW_012115566v1    2679923   3 -   3067355 I

a score=130382.000000
s hg38.chr6_GL000254v2_alt   930744 29 +   4827813 attacaggtgtgagccaccgcacctggcc
s panTro5.chr6             29893679 29 + 175400573 attacaggtgtgagccaccgcacctggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127554 29 + 173848474 attacaggtgtgagccaccgcacctgccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5926950 29 +   6154872 attacaggtgtgagccaccgcgcctggcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74643782 29 + 122973662 attacaggtgtgagccactgcacctagcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125362 29 + 172585720 attacaggtgtgagctactgcgcccagcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790044 29 - 170955103 attacaggtgtgagctactgcgcccagcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2835967 29 -   2996164 attacaggtgtgagctactgcgcccagcc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585430 29 +    766320 attacaggtgtgagccactgtgcccagcc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29042649 29 -  71996105 attacaggtgtgagccactgcgcccagcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237537 29 +    290775 attacaggtgtgagccactgtgcccagcc
i manLeu1.NW_012099233v1   C 0 C 0
s canFam3.chr35            26261952 14 +  26524999 attaaagatatgaa---------------
i canFam3.chr35            I 331 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             7519 3469 -    110772 I
e otoGar3.GL873550           156862 92 +  18854210 I
e aotNan1.NW_018509740v1     345133 1824 -    457564 I
e cebCap1.NW_016107755v1     274181 1967 -   1771730 I
e calJac3.chrUn_GL286223      54763 2400 +    132061 I
e colAng1.NW_012115566v1    2679923  3 -   3067355 I

a score=588248.000000
s hg38.chr6_GL000254v2_alt   930773 111 +   4827813 aatatttgtgatttttattgacgacaaagtcaaaggttctcttcatattattgtggtgtatcgcctacaagcataattaaaataaacactaaatttcagtttaaagtttac
s panTro5.chr6             29893708 111 + 175400573 aatatttgtgatttttattgatgacaaagtcaaaggttctcttcatattattgtggtgtatcgcctacaagcataattaaaataaacactaaatttcagtttaaagtttac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127583 111 + 173848474 aatatttgtgatttttattgatgacaaagtcaaaggttctcttcatattattgtggtgtatcgcctacaagcataattaaaataaacactaaatttcagtttaaagtttac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5926979 111 +   6154872 aatatttgtgatttttattgatgacaaagtcaaaggttctcttcatattattgtggtgtatcgcctacaagcataattaaaataaacactaaatttcagtttaaagtttac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74643811 111 + 122973662 aatatttgtgatttttattgacgacaaagtcaaaggttctgttcatattactgtggtgtattgcttacaagcataattaaaataaacactaaatttcagtttcaaggttac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125391 111 + 172585720 aatgtttgtgatttttactgatgacaaagtcaaaggttctgttcaaattattgtggtgtattgcctacaggcataatcaaagtaaacactaaatttcagttcaatggttac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790073 110 - 170955103 aatgtttgtgatttttactgatgacaaagtcaaaggttctgttcaaattattgtggtgtattgcctac-tgcataattaaagtaaacactaaatttcagttcaaaggttac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2835996 111 -   2996164 aatgtttgtgatttttactgatgacaaagtcaaaggttctgttcaaattattgtggtgtattgcctacaggcataatcaaagtaaacactaaatttcagttcaatggttac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585459 106 +    766320 aatatttgtgatttttactgatgacaaagtcaaaggttctgttcaaattattgtggtgtattgcctacaggcataat-----taaatactaaatttcagttcaaaggttac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29042678 106 -  71996105 aatgtttgtgatttttactgatgacaaagtcaaaggttctgttcaaattattgtggtgtattgcctacaggcataat-----taaacactaaatttcagttcaaaggttac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237566 111 +    290775 aatatttgtgatttttactgatgacaaagtcaaaggttctgttcaaattattgtggtgtattgcctacaggcataattaaagtaaatactaaatttcagttcaaaggttac
i manLeu1.NW_012099233v1   C 0 C 0
s otoGar3.GL873550           156954 103 +  18854210 aatatttgtgacttttatggaagac--------agtttctattcatattattagggtgaactgcctacaaacatgattaaaagaaacactaaatttcagatcaacagttac
i otoGar3.GL873550         I 92 C 0
s canFam3.chr35            26261966  89 +  26524999 aatatctgtgggttttattgatgacggggtcacaggttctgttcatggc-ctgtg---------ctactag------------aaatgctaagtgtcaggttaaagattac
i canFam3.chr35            C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             7519 3469 -    110772 I
e aotNan1.NW_018509740v1     345133 1824 -    457564 I
e cebCap1.NW_016107755v1     274181 1967 -   1771730 I
e calJac3.chrUn_GL286223      54763 2400 +    132061 I
e colAng1.NW_012115566v1    2679923   3 -   3067355 I

a score=106218.000000
s hg38.chr6_GL000254v2_alt   930884 22 +   4827813 tgaaaataaatatgtatttttt
s panTro5.chr6             29893819 22 + 175400573 tgaaaataaatatgtatttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127694 22 + 173848474 tgaaaataaatatgtatttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927090 22 +   6154872 tgaaaataaatatgtatttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74643922 22 + 122973662 tgaaaataaatatgtatttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125502 18 + 172585720 tga----aaatatgtatttttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790183 18 - 170955103 tga----aaatatgtatttttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836107 18 -   2996164 tga----aaatatgtatttttc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585565 18 +    766320 tga----aaatatgtatttttc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29042784 18 -  71996105 tga----aaatatgtatttttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237677 18 +    290775 tga----aaatatgtatttttc
i manLeu1.NW_012099233v1   C 0 C 0
s aotNan1.NW_018509740v1     346957 22 -    457564 TGAAAATAAAAATGTATTTTTT
i aotNan1.NW_018509740v1   I 1824 C 0
s otoGar3.GL873550           157057 20 +  18854210 tgaaaataaatatttatttt--
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26262055 22 +  26524999 tgaagatcagcatgtatgcttt
i canFam3.chr35            C 0 I 60
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             7519 3469 -    110772 I
e cebCap1.NW_016107755v1     274181 1967 -   1771730 I
e calJac3.chrUn_GL286223      54763 2400 +    132061 I
e colAng1.NW_012115566v1    2679923  3 -   3067355 I

a score=299218.000000
s hg38.chr6_GL000254v2_alt   930906 49 +   4827813 attccctatttaagctt-tgaatcccctgacttcctataccatTACCACT
s panTro5.chr6             29893841 49 + 175400573 attcactatttaagctt-tgaagcccctgacttcctataccatTACCACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127716 49 + 173848474 attcactatttaagctt-tgaatcccctgacttcctataccatTACCACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927112 49 +   6154872 attccctatttaagctt-tgaatcccctgacttcctataccatTACCACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74643944 49 + 122973662 attccctatttaagctt-tgaatcccctgacttcctataccatTACCACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125520 49 + 172585720 attctgtatttaagctt-tgaatcccctgacttcctataccatTACCACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790201 49 - 170955103 attccgtatttaagctt-tgaatcccctgacttcctataccatTACCACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836125 49 -   2996164 attccgtatttaagctt-tgaatcccctgacttcctataccatTACCACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585583 49 +    766320 attccgtatttaagctt-tgaatcctctgacttcctataccatTACCACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29042802 49 -  71996105 attccgtatttaagctt-tgaatcccctgacttcctataccatTACCACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237695 49 +    290775 attccgtatttaagctt-tgaatcctctgacttcctataccatTACCACT
i manLeu1.NW_012099233v1   C 0 C 0
s aotNan1.NW_018509740v1     346979 48 -    457564 ATCCCCTATTTAAGCTT-TGAATCCCCTGACTT-CTATGCTGTTACCACT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           157077 49 +  18854210 -tttcccatttaaactcacagatcacttgacttcCTACACCACCACTGCT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26262077 60 +  26524999 I
e saiBol1.JH378388             7519 3469 -    110772 I
e cebCap1.NW_016107755v1     274181 1967 -   1771730 I
e calJac3.chrUn_GL286223      54763 2400 +    132061 I
e colAng1.NW_012115566v1    2679923  3 -   3067355 I

a score=209256.000000
s hg38.chr6_GL000254v2_alt   930955 37 +   4827813 GTCCTAGTTCAGGTTCATG--TTGTTTTTTACTTTAATT
s panTro5.chr6             29893890 37 + 175400573 GTCCTAGTTCAGGTTCATG--TTGTTTTTTACTTTAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127765 37 + 173848474 GTCCTAGTTCAGGTTCATG--TTGTTTTTTACTTTAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927161 37 +   6154872 GTCCTAGTTCAGGTTCATG--TTGTTTTTTACTTTAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74643993 37 + 122973662 GTCCTAGTTCAGGTTCGTG--TTGTTTTTTACTTTAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125569 33 + 172585720 GTCCTAGTTCAGGCTCATG--TTGTTTTTTACT----TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790250 33 - 170955103 GTCCTAGTTCAGGCTCATG--TTGTTTTTTACT----TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836174 33 -   2996164 GTCCTAGTTCAGGCTCATG--TTGTTTTTTACT----TT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585632 33 +    766320 GTCCTAGTTCAGGCTCATG--TTGTTTTTTACT----TT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29042851 33 -  71996105 GTCCTAGTTCAGGCTCATG--TTGTTTTTTACT----TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237744 33 +    290775 GTCCTAGTTCAGGCTCATG--TTGTTTTTTACT----TT
i manLeu1.NW_012099233v1   C 0 C 0
s aotNan1.NW_018509740v1     347027 37 -    457564 GTCTTAGTTCAGGCTCATG--TTGTTTTTCACTTTAATT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           157126 36 +  18854210 GTCC-AGTTCAGGCTCATG--TTGATTTTTACTTTAACT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26262137 32 +  26524999 GTCCTGGTTCAGCTTAGGGCATTGTTTTCACC-------
i canFam3.chr35            I 60 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             7519 3469 -    110772 I
e cebCap1.NW_016107755v1     274181 1967 -   1771730 I
e calJac3.chrUn_GL286223      54763 2400 +    132061 I
e colAng1.NW_012115566v1    2679923  3 -   3067355 I

a score=8666.000000
s hg38.chr6_GL000254v2_alt   930992 1 +   4827813 G
s panTro5.chr6             29893927 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127802 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927198 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644030 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125602 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790283 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836207 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585665 1 +    766320 G
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29042884 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237777 1 +    290775 G
i manLeu1.NW_012099233v1   C 0 C 0
s cebCap1.NW_016107755v1     276148 1 -   1771730 G
i cebCap1.NW_016107755v1   I 1967 C 0
s aotNan1.NW_018509740v1     347064 1 -    457564 G
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           157162 1 +  18854210 G
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26262169 1 +  26524999 A
i canFam3.chr35            C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             7519 3469 -    110772 I
e calJac3.chrUn_GL286223      54763 2400 +    132061 I
e colAng1.NW_012115566v1    2679923 3 -   3067355 I

a score=9090.000000
s hg38.chr6_GL000254v2_alt   930993 1 +   4827813 T
s panTro5.chr6             29893928 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127803 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927199 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644031 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125603 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790284 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836208 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585666 1 +    766320 T
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29042885 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237778 1 +    290775 T
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      57163 1 +    132061 T
i calJac3.chrUn_GL286223   I 2400 C 0
s cebCap1.NW_016107755v1     276149 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     347065 1 -    457564 T
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           157163 1 +  18854210 C
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26262170 1 +  26524999 T
i canFam3.chr35            C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e saiBol1.JH378388             7519 3469 -    110772 I
e colAng1.NW_012115566v1    2679923 3 -   3067355 I

a score=141878.000000
s hg38.chr6_GL000254v2_alt   930994 13 +   4827813 TATCACAGTCTCT
s panTro5.chr6             29893929 13 + 175400573 TATCACAGTCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127804 13 + 173848474 TATCACAGTCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927200 13 +   6154872 TATCACAGTCTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644032 13 + 122973662 TATCACAGTCTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125604 13 + 172585720 TATCACAGTCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790285 13 - 170955103 TATCACAGTCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836209 13 -   2996164 TATCACAGTCTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585667 13 +    766320 TATCACAGTCTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29042886 13 -  71996105 TATCACAGTCTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237779 13 +    290775 TATCACAGTCTCT
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      57164 13 +    132061 TATTACAGTCTCT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            10988 13 -    110772 TATCACAGTCTCT
i saiBol1.JH378388         I 3469 C 0
s cebCap1.NW_016107755v1     276150 13 -   1771730 TATCAGAGTCTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     347066 13 -    457564 TATCACAGTCTCt
i aotNan1.NW_018509740v1   C 0 I 407
s otoGar3.GL873550           157164 13 +  18854210 TATCAAGGCCTCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26262171 13 +  26524999 TACCCTGGCCTCT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e colAng1.NW_012115566v1    2679923  3 -   3067355 I

a score=659165.000000
s hg38.chr6_GL000254v2_alt   931007 82 +   4827813 TAACATTTCTCCCTATGTTCTCCAGTCCTGTAGGTGCTAAATCTGACGTGGTCACTTCTCAGCTTGGAATCCTTCAGTGCAC
s panTro5.chr6             29893942 82 + 175400573 TAACATTTCTCCCTATGTTCTCCAGTCCTGTAGGTGCTAAATCTGATGTGGTCACTTCTCAGCTTGGAATCCTTCAGTGCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127817 82 + 173848474 TAACATTTCTCCCTATGTTCTCCAGTCCTGTAGGTGCTAAATCTGATGTGGTCACTTCTCAGCTTGGAATCCTTCAGTGCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927213 82 +   6154872 TAACATTTCTCCCTATGTTCTCCAGTCCTGTAGGTGCTAAATCTGATGTGGTCACTTCTCAGCTTGGAATCCTTCAGTGCAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644045 82 + 122973662 TAACATTTCTCCCTATCTTCTCCAGTGCTGTAGGTGCtaaatctgatgtggtcacttctcagcttggaatccttcagtgcac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125617 82 + 172585720 TAACATTTCTCCCTATCTTCTCCAGTCCTGTAGGTGCtaaatctgatgtggtcacttctctgtttggaatccttcagtgcac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790298 82 - 170955103 TAACATTTCTCCCTATCTTCTCCAGTCCTGTAGGTGCtaaatctgatgtggtcacttctctgtttggaatccttcagtgcac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836222 82 -   2996164 TAACATTTCTCCCTATCTTCTCCAGTCCTGTAGGTGCtaaatctgatgtggtcacttctctgtttggaatccttcagtgcac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585680 82 +    766320 TAACATTTCTCCCTATCTTCTCCAGTCCTGTAGGTGCTAAATCTGATGTGGTCACTTCTCCGTTTGGAATCCTTCAGTGCAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29042899 82 -  71996105 TAACATTTCTCCCTATCTTCTCCAGTCCTGTAGGTGCtaaatctgatgtggtcacttctccgtttggaatctttcagtgcac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237792 82 +    290775 TAACATTTCTCCCTATCTTCTCCAGTCCTGTAGGTGCTAAATCTGATGTGGTCACTTCTCCGTTTGGAATCCTTCAGTGCAC
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      57177 82 +    132061 TAACAGATCTCCCTATCTTCTCCAGCACTGTAAGTGCTAAATCTGATGTGGTCACTTCTCAGCTTGCAATCCTTCAGTGCAC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            11001 71 -    110772 TAACAGATTTCCCTGTCTTTTCCAGCACT-----------ATCTGATGTGGTCACTTCTCAGCTTGCAGTCCTTCCGTGCAC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     276163 82 -   1771730 TAACAGATTTCCCTATCTTTTCCAGCACTATAAGTGCTAAATCTGATGTGGTCACTTCTCAGCCTGCAGTCCTTCAGTACAC
i cebCap1.NW_016107755v1   C 0 I 60
s otoGar3.GL873550           157177 78 +  18854210 ----TGCCTTTCCTCTCTCCTCCAGGCCTGTAGGCAGtaaatctgatcttgttgctcctcagcttagaatccttcagtgCAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26262184 76 +  26524999 GAACGGGCCACCCTCCTCCCTC-----CTGCAGGGGGCA-GTCAGGGGTCGGGCCGTCCTCCCCCGGACCCCTCCAGTGAGC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e aotNan1.NW_018509740v1     347079 407 -    457564 I
e colAng1.NW_012115566v1    2679923  3 -   3067355 I

a score=9100.000000
s hg38.chr6_GL000254v2_alt   931089 1 +   4827813 C
s panTro5.chr6             29894024 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127899 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927295 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644127 1 + 122973662 c
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125699 1 + 172585720 c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790380 1 - 170955103 c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836304 1 -   2996164 c
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585762 1 +    766320 C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29042981 1 -  71996105 c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237874 1 +    290775 C
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      57259 1 +    132061 C
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            11072 1 -    110772 C
i saiBol1.JH378388         C 0 C 0
s canFam3.chr35            26262260 1 +  26524999 C
i canFam3.chr35            C 0 I 356
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e otoGar3.GL873550           157255 0 +  18854210 C
e aotNan1.NW_018509740v1     347079 407 -    457564 I
e cebCap1.NW_016107755v1     276245 60 -   1771730 I
e colAng1.NW_012115566v1    2679923 3 -   3067355 I

a score=45827.000000
s hg38.chr6_GL000254v2_alt   931090 7 +   4827813 ACCACAG
s panTro5.chr6             29894025 7 + 175400573 CCCACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127900 7 + 173848474 CCCACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927296 7 +   6154872 CCCACAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644128 7 + 122973662 cccacgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125700 7 + 172585720 cccacgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790381 7 - 170955103 cccacgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836305 7 -   2996164 cccacgg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585763 7 +    766320 CCCACGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29042982 7 -  71996105 cccacgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237875 7 +    290775 CCCACGG
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      57260 7 +    132061 CCCATGG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            11073 7 -    110772 CCCATGG
i saiBol1.JH378388         C 0 C 0
s otoGar3.GL873550           157255 7 +  18854210 CTGATGG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26262261 356 +  26524999 I
e aotNan1.NW_018509740v1     347079 407 -    457564 I
e cebCap1.NW_016107755v1     276245 60 -   1771730 I
e colAng1.NW_012115566v1    2679923 3 -   3067355 I

a score=22352.000000
s hg38.chr6_GL000254v2_alt   931097 6 +   4827813 CCTTGA
s panTro5.chr6             29894032 6 + 175400573 ACTTGA
i panTro5.chr6             C 0 I 3
s panPan2.chr6             30127907 6 + 173848474 ACTTGA
i panPan2.chr6             C 0 I 3
s gorGor5.CYUI01015250v1    5927303 6 +   6154872 CCTTGA
i gorGor5.CYUI01015250v1   C 0 I 10
s rheMac8.chr4             30125707 6 + 172585720 ccttga
i rheMac8.chr4             C 0 I 3
s macNem1.NW_012011356v1    2836312 6 -   2996164 ccttga
i macNem1.NW_012011356v1   C 0 I 3
s cerAty1.NW_012002711v1     585770 6 +    766320 CCTTGA
i cerAty1.NW_012002711v1   C 0 I 3
s chlSab2.chr17            29042989 6 -  71996105 ccttga
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012099233v1     237882 6 +    290775 CCTTGA
i manLeu1.NW_012099233v1   C 0 I 3
s otoGar3.GL873550           157262 6 +  18854210 CCTTGA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26262261 356 +  26524999 I
e saiBol1.JH378388            11080 0 -    110772 C
e aotNan1.NW_018509740v1     347079 407 -    457564 I
e cebCap1.NW_016107755v1     276245 60 -   1771730 I
e calJac3.chrUn_GL286223      57267 0 +    132061 C
e colAng1.NW_012115566v1    2679923 3 -   3067355 I
e macFas5.chr4             29790388 0 - 170955103 C
e nomLeu3.chr1a            74644135 0 + 122973662 C

a score=-54.000000
s hg38.chr6_GL000254v2_alt   931103 3 +   4827813 ACT
s otoGar3.GL873550           157268 3 +  18854210 GAT
i otoGar3.GL873550         C 0 I 309
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26262261 356 +  26524999 I
e saiBol1.JH378388            11080 0 -    110772 C
e aotNan1.NW_018509740v1     347079 407 -    457564 I
e cebCap1.NW_016107755v1     276245 60 -   1771730 I
e calJac3.chrUn_GL286223      57267 0 +    132061 C
e colAng1.NW_012115566v1    2679923 3 -   3067355 I
e manLeu1.NW_012099233v1     237888 3 +    290775 I
e chlSab2.chr17            29042995 3 -  71996105 I
e cerAty1.NW_012002711v1     585776 3 +    766320 I
e macNem1.NW_012011356v1    2836318 3 -   2996164 I
e macFas5.chr4             29790388 0 - 170955103 C
e rheMac8.chr4             30125713 3 + 172585720 I
e nomLeu3.chr1a            74644135 0 + 122973662 C
e gorGor5.CYUI01015250v1    5927309 10 +   6154872 I
e panPan2.chr6             30127913 3 + 173848474 I
e panTro5.chr6             29894038 3 + 175400573 I

a score=0.000000
s hg38.chr6_GL000254v2_alt   931106 131 +   4827813 ACATATTTGAAAtacatatttattttcagtaaactttaaactgaaatttagtgtttattttaattatgcttgtaggcgatacaccacaataatatgaagagaacctttgactttgtcgtcaataaaaaGTC
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26262261 356 +  26524999 I
e saiBol1.JH378388            11080   0 -    110772 C
e otoGar3.GL873550           157271 309 +  18854210 I
e aotNan1.NW_018509740v1     347079 407 -    457564 I
e cebCap1.NW_016107755v1     276245  60 -   1771730 I
e calJac3.chrUn_GL286223      57267   0 +    132061 C
e colAng1.NW_012115566v1    2679923   3 -   3067355 I
e manLeu1.NW_012099233v1     237888   3 +    290775 I
e chlSab2.chr17            29042995   3 -  71996105 I
e cerAty1.NW_012002711v1     585776   3 +    766320 I
e macNem1.NW_012011356v1    2836318   3 -   2996164 I
e macFas5.chr4             29790388   0 - 170955103 C
e rheMac8.chr4             30125713   3 + 172585720 I
e nomLeu3.chr1a            74644135   0 + 122973662 C
e gorGor5.CYUI01015250v1    5927309  10 +   6154872 I
e panPan2.chr6             30127913   3 + 173848474 I
e panTro5.chr6             29894038   3 + 175400573 I

a score=1000.000000
s hg38.chr6_GL000254v2_alt   931237 1 +   4827813 C
s nomLeu3.chr1a            74644135 1 + 122973662 c
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29790388 1 - 170955103 c
i macFas5.chr4             C 0 C 0
s calJac3.chrUn_GL286223      57267 1 +    132061 C
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            11080 1 -    110772 C
i saiBol1.JH378388         C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            82605 550 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26262261 356 +  26524999 I
e otoGar3.GL873550           157271 309 +  18854210 I
e aotNan1.NW_018509740v1     347079 407 -    457564 I
e cebCap1.NW_016107755v1     276245 60 -   1771730 I
e colAng1.NW_012115566v1    2679923 3 -   3067355 I
e manLeu1.NW_012099233v1     237888 3 +    290775 I
e chlSab2.chr17            29042995 3 -  71996105 I
e cerAty1.NW_012002711v1     585776 3 +    766320 I
e macNem1.NW_012011356v1    2836318 3 -   2996164 I
e rheMac8.chr4             30125713 3 + 172585720 I
e gorGor5.CYUI01015250v1    5927309 10 +   6154872 I
e panPan2.chr6             30127913 3 + 173848474 I
e panTro5.chr6             29894038 3 + 175400573 I

a score=5950.000000
s hg38.chr6_GL000254v2_alt   931238 11 +   4827813 CTTGAGGGACT---
s nomLeu3.chr1a            74644136  8 + 122973662 cttgagga------
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29790389  8 - 170955103 cttgagga------
i macFas5.chr4             C 0 C 0
s calJac3.chrUn_GL286223      57268  8 +    132061 CTTGAGGA------
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            11081  8 -    110772 CTTGAGGA------
i saiBol1.JH378388         C 0 C 0
s dasNov3.JH582591            83155 11 +    102524 CTTGAGGA---GCC
i dasNov3.JH582591         I 550 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26262261 356 +  26524999 I
e otoGar3.GL873550           157271 309 +  18854210 I
e aotNan1.NW_018509740v1     347079 407 -    457564 I
e cebCap1.NW_016107755v1     276245 60 -   1771730 I
e colAng1.NW_012115566v1    2679923  3 -   3067355 I
e manLeu1.NW_012099233v1     237888  3 +    290775 I
e chlSab2.chr17            29042995  3 -  71996105 I
e cerAty1.NW_012002711v1     585776  3 +    766320 I
e macNem1.NW_012011356v1    2836318  3 -   2996164 I
e rheMac8.chr4             30125713  3 + 172585720 I
e gorGor5.CYUI01015250v1    5927309 10 +   6154872 I
e panPan2.chr6             30127913  3 + 173848474 I
e panTro5.chr6             29894038  3 + 175400573 I

a score=39809.000000
s hg38.chr6_GL000254v2_alt   931249 7 +   4827813 --TCAGATG
s panTro5.chr6             29894041 7 + 175400573 --TCAGATC
i panTro5.chr6             I 3 C 0
s panPan2.chr6             30127916 7 + 173848474 --TCAGATC
i panPan2.chr6             I 3 C 0
s nomLeu3.chr1a            74644144 7 + 122973662 --tcagatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125716 7 + 172585720 --tcagatc
i rheMac8.chr4             I 3 C 0
s macFas5.chr4             29790397 7 - 170955103 --tcagatc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836321 7 -   2996164 --tcagatc
i macNem1.NW_012011356v1   I 3 C 0
s cerAty1.NW_012002711v1     585779 7 +    766320 --TCAGATC
i cerAty1.NW_012002711v1   I 3 C 0
s chlSab2.chr17            29042998 7 -  71996105 --tcagatc
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012099233v1     237891 7 +    290775 --TCAGATC
i manLeu1.NW_012099233v1   I 3 C 0
s calJac3.chrUn_GL286223      57276 7 +    132061 --CCAGATC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            11089 7 -    110772 --TCAGATC
i saiBol1.JH378388         C 0 C 0
s aotNan1.NW_018509740v1     347486 7 -    457564 --TCAGATG
i aotNan1.NW_018509740v1   I 407 C 0
s dasNov3.JH582591            83166 4 +    102524 CGTC-----
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26262261 356 +  26524999 I
e otoGar3.GL873550           157271 309 +  18854210 I
e cebCap1.NW_016107755v1     276245 60 -   1771730 I
e colAng1.NW_012115566v1    2679923 3 -   3067355 I
e gorGor5.CYUI01015250v1    5927309 10 +   6154872 I

a score=195337.000000
s hg38.chr6_GL000254v2_alt   931256 24 +   4827813 TAAGTCCCTTAGCTGCTCGTTAAA
s panTro5.chr6             29894048 24 + 175400573 TAAGTCCCTTAGCTGCTCCTTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127923 24 + 173848474 TAAGTCCCTTAGCTGCTCCTTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927319 24 +   6154872 TAAGTCCGTTAGCTGCTCCTTAAA
i gorGor5.CYUI01015250v1   I 10 C 0
s nomLeu3.chr1a            74644151 24 + 122973662 taaattccttaGCTGCTCCTTAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125723 24 + 172585720 taagtcccttaGCTGCTCCTTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790404 24 - 170955103 taagtcccttaGCTGCTCCTTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836328 24 -   2996164 taagtcccttaGCTGCTCCTTAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585786 24 +    766320 TAAGTCCCTTAGCTGCTCCTTAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043005 24 -  71996105 taagttccttaGCTGCTCCTTAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237898 24 +    290775 TAAGTCCCTTAGCTGCTCCTTAAA
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      57283 24 +    132061 TAAGTCCCTTACCTGCTCCTTAAA
i calJac3.chrUn_GL286223   C 0 I 12
s saiBol1.JH378388            11096 23 -    110772 TAAGTCCCTTACCTGCTCCTTAA-
i saiBol1.JH378388         C 0 I 9
s aotNan1.NW_018509740v1     347493 24 -    457564 TAAGTCCCTTACCTGCTCCTTAAA
i aotNan1.NW_018509740v1   C 0 I 16
s dasNov3.JH582591            83170 24 +    102524 CAGTTCCCTTACCTGGTTCCCAAA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26262261 356 +  26524999 I
e otoGar3.GL873550           157271 309 +  18854210 I
e cebCap1.NW_016107755v1     276245 60 -   1771730 I
e colAng1.NW_012115566v1    2679923  3 -   3067355 I

a score=40748.000000
s hg38.chr6_GL000254v2_alt   931280 7 +   4827813 ACTCCCC
s panTro5.chr6             29894072 7 + 175400573 ACTCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127947 7 + 173848474 ACTCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927343 7 +   6154872 ACTCCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644175 7 + 122973662 ACTCTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125747 7 + 172585720 ACTCCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790428 7 - 170955103 ACTCCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836352 7 -   2996164 ACTCCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585810 7 +    766320 ACTCCCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043029 7 -  71996105 ACTCCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237922 7 +    290775 ACTCCCC
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      57319 2 +    132061 -----CC
i calJac3.chrUn_GL286223   I 12 I 5
s saiBol1.JH378388            11128 2 -    110772 -----AC
i saiBol1.JH378388         I 9 I 2
s dasNov3.JH582591            83194 7 +    102524 ACTTCCC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26262261 356 +  26524999 I
e otoGar3.GL873550           157271 309 +  18854210 I
e aotNan1.NW_018509740v1     347517 16 -    457564 I
e cebCap1.NW_016107755v1     276245 60 -   1771730 I
e colAng1.NW_012115566v1    2679923 3 -   3067355 I

a score=153693.000000
s hg38.chr6_GL000254v2_alt   931287 15 +   4827813 CAGCCTGACCCAATA
s panTro5.chr6             29894079 15 + 175400573 CAGCCTGACCCAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127954 15 + 173848474 CAGCCTGACCCAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927350 15 +   6154872 CAGCCTGACCCAATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644182 15 + 122973662 CAGCCTGACCCAATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125754 15 + 172585720 CAGCCTGACCCAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790435 15 - 170955103 CAGCCTGACCCAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836359 15 -   2996164 CAGCCTGACCCAATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585817 15 +    766320 CAGCCTGACCCAATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043036 15 -  71996105 CAGCCTGACCCAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237929 15 +    290775 CAGCCTGACCCAATA
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      57326 15 +    132061 TTGCCTGACCCAATA
i calJac3.chrUn_GL286223   I 5 C 0
s saiBol1.JH378388            11132 15 -    110772 CAGCCTGACCCAATA
i saiBol1.JH378388         I 2 C 0
s cebCap1.NW_016107755v1     276305 15 -   1771730 CAGCCTGACCCAAGA
i cebCap1.NW_016107755v1   I 60 C 0
s aotNan1.NW_018509740v1     347533 15 -    457564 CAGCCTGACCCAATA
i aotNan1.NW_018509740v1   I 16 C 0
s dasNov3.JH582591            83201 15 +    102524 GCGCCTGGCCCAAGA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26262261 356 +  26524999 I
e otoGar3.GL873550           157271 309 +  18854210 I
e colAng1.NW_012115566v1    2679923  3 -   3067355 I

a score=39576.000000
s hg38.chr6_GL000254v2_alt   931302 3 +   4827813 CAC
s panTro5.chr6             29894094 3 + 175400573 CAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127969 3 + 173848474 CAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927365 3 +   6154872 CAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644197 3 + 122973662 CAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125769 3 + 172585720 CAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790450 3 - 170955103 CAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836374 3 -   2996164 CAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585832 3 +    766320 CAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043051 3 -  71996105 CAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237944 3 +    290775 CAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679926 3 -   3067355 cac
i colAng1.NW_012115566v1   I 3 C 0
s calJac3.chrUn_GL286223      57341 3 +    132061 CAC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            11147 3 -    110772 CAC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     276320 3 -   1771730 CAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     347548 3 -    457564 CAC
i aotNan1.NW_018509740v1   C 0 C 0
s dasNov3.JH582591            83216 3 +    102524 CAC
i dasNov3.JH582591         C 0 I 492
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26262261 356 +  26524999 I
e otoGar3.GL873550           157271 309 +  18854210 I

a score=16038.000000
s hg38.chr6_GL000254v2_alt   931305 2 +   4827813 AA
s panTro5.chr6             29894097 2 + 175400573 AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127972 2 + 173848474 AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927368 2 +   6154872 AA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644200 2 + 122973662 AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125772 2 + 172585720 AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790453 2 - 170955103 AA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836377 2 -   2996164 AA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585835 2 +    766320 AA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043054 2 -  71996105 AA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237947 2 +    290775 AA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679929 2 -   3067355 AG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      57344 2 +    132061 AA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            11150 2 -    110772 AA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     276323 2 -   1771730 AA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     347551 2 -    457564 AA
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               178543 538 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            83219 492 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26262261 356 +  26524999 I
e otoGar3.GL873550           157271 309 +  18854210 I

a score=283192.000000
s hg38.chr6_GL000254v2_alt   931307 30 +   4827813 TCTTGACTTTAAACCACTTGTCATTCTAAA
s panTro5.chr6             29894099 30 + 175400573 TCTTGACTTTAAACCACTCGTCATTCTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30127974 30 + 173848474 TCTTGACTTTAAACCACTCGTCATTCTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927370 30 +   6154872 TCTTGACTTTAAACCACTTGTCATTCTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644202 30 + 122973662 TCTTGACTTTAAACCACTTGTCATTCTAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125774 30 + 172585720 TCTTGACTTTAAACTACTTGTCATTCTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790455 30 - 170955103 TCTTGACTTTAAACTACTTGTCATTCTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836379 30 -   2996164 TCTTGACTTTAAACTACTTGTCATTCTAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585837 30 +    766320 TCTTGACTTTAAACTACTTGTCATTCTAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043056 30 -  71996105 TCTTGACTTTAAACTACTTGTCATTCTAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237949 30 +    290775 TCTTGACTTTAAACTACTTGTCATTCTAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679931 30 -   3067355 TCTTGACTTTAAACTACTTATCATTCTAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      57346 13 +    132061 TCCTAACTT-----------------TAAA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            11152 30 -    110772 TCTTGACTTTAAACCACTTGTCATTCTAAA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     276325 30 -   1771730 CCTTGACTTTAAACCACTTGTCATTCTAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     347553 13 -    457564 TCCTGACTT-----------------TAAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               179081 30 + 123392446 TCTTGGCTTTAAACCACTTGTCATTCTAAA
i micMur3.chr6             I 538 I 382
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            83219 492 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26262261 356 +  26524999 I
e otoGar3.GL873550           157271 309 +  18854210 I

a score=203034.000000
s hg38.chr6_GL000254v2_alt   931337 22 +   4827813 TCACTAGCATTTCCTGG-AAAAA
s panTro5.chr6             29894129 22 + 175400573 TCACTAGCATTTCCTGG-AAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128004 22 + 173848474 TCACTAGCATTTCCTGA-AAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927400 22 +   6154872 TCACTAGCATTTCCTGG-AAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644232 22 + 122973662 TCACTAGCATTTCCTGG-aaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125804 22 + 172585720 TCAATAGCATTTCCTGG-AAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790485 22 - 170955103 TCAATAGCATTTCCTGG-AAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836409 22 -   2996164 TCAATAGCATTTCCTGG-AAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585867 22 +    766320 TCAATAGCATTTCCTGG-AAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043086 22 -  71996105 TCAATAGCATTTCCTGG-AAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     237979 23 +    290775 TCAATAGCATTTCCTGGAAAAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679961 22 -   3067355 TCAATAGCATTTCCTGG-AAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      57359 22 +    132061 CCACTAGCATTTCCCAG-AAACA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            11182 22 -    110772 CCACTAGCATTTCCTAG-AAACA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     276355 22 -   1771730 CCACTAGCATTTCCTAG-AAACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     347566 22 -    457564 CCACTAGCATTTCCTAG-AAACA
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               179111 382 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            83219 492 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26262261 356 +  26524999 I
e otoGar3.GL873550           157271 309 +  18854210 I

a score=335549.000000
s hg38.chr6_GL000254v2_alt   931359 40 +   4827813 AAAGC---------CATTTTTCCTTCAGGGCTAAGCTCAGGGACCAATT
s panTro5.chr6             29894151 41 + 175400573 AAAAAA--------CATTTTTCCTTCAGGGCTAAGCTCAGGGACCAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128026 39 + 173848474 AAAA----------CATTTTTCCTTCAGGGCTAAGCTCAGGGACCAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927422 43 +   6154872 AAAAAA------ACCATTTTTCCTTCAGGGCTAAGCTCAGGGACCAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644254 49 + 122973662 aaaaaaaaaaaaaCCGTTTTTCCTTCAGGGCTAAGCTCAGGGACCAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125826 37 + 172585720 AA------------CATTTTTCCATCAAGGCTAAGCTCAGGGACCAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790507 37 - 170955103 AA------------CATTTTTCCATCAAGGCTAAGCTCAGGGACCAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836431 36 -   2996164 AA-------------ATTTTTCCATCAAGGCTAAGCTCAGGGACCAATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585889 37 +    766320 AA------------CATTTTTCCATCAAGGCTAAGCTCAGGGACCAATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043108 37 -  71996105 AA------------CATTTTTCCATCAAGGCTAAGCTCAGGGACCAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     238002 37 +    290775 AA------------CATTTTTCCATCAAGGCTAAGCTCAGGGACCAATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2679983 37 -   3067355 AA------------CATTTTTCCATCAAGGCTAAGCTCAGGGACCAATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      57381 39 +    132061 AACC----------CACTTTTCCTTCAAGGCTAAGCTCAGGGGTCAATT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            11204 39 -    110772 AAcc----------tacttttccttcaaggctaagctcagaagtcaatt
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     276377 39 -   1771730 AACC----------CACTTTTCCTTCAAGGCTAAGCTCAAGGGTCAATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     347588 39 -    457564 aact----------cacttttccttcaaggctaagctcaggggtcaatt
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           157580 40 +  18854210 ---------AAGCCCACTTTTCCTTTAAGGCTAAACTCCTGGACAAATT
i otoGar3.GL873550         I 309 C 0
e micMur3.chr6               179111 382 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            83219 492 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I
e canFam3.chr35            26262261 356 +  26524999 I

a score=15300.000000
s hg38.chr6_GL000254v2_alt   931399 1 +   4827813 C
s panTro5.chr6             29894192 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128065 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927465 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644303 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125863 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790544 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836467 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585926 1 +    766320 C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043145 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     238039 1 +    290775 C
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680020 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      57420 1 +    132061 C
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            11243 1 -    110772 c
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     276416 1 -   1771730 C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     347627 1 -    457564 c
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           157620 1 +  18854210 C
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26262617 1 +  26524999 C
i canFam3.chr35            I 356 C 0
e micMur3.chr6               179111 382 + 123392446 I
e mm10.chr17               57969122 428 -  94987271 I
e dasNov3.JH582591            83219 492 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I

a score=259398.000000
s hg38.chr6_GL000254v2_alt   931400 20 +   4827813 TGTGTCACCTTCTTTGAATC
s panTro5.chr6             29894193 20 + 175400573 TGTGTCACCTTCTTTGAATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128066 20 + 173848474 TGTGTCACCTTCTTTGAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927466 20 +   6154872 TGTGTCACCTTCTTTGAATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644304 20 + 122973662 TGTATCACCTTCTTTGAATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125864 20 + 172585720 TGTGTCACCTTCTTTGAATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790545 20 - 170955103 TGTGTCACCTTCTTTGAATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836468 20 -   2996164 TGTGTCACCTTCTTTGAATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585927 20 +    766320 TGTGTCACCTTCTTTGAATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043146 17 -  71996105 TGTGTCGC---CTTTGAATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     238040 20 +    290775 TGCGTCACCTTCTTTGAATC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680021 20 -   3067355 TGTGTCACCTTCTTTGAATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      57421 20 +    132061 TGTGTCACCTTCTCTGAATC
i calJac3.chrUn_GL286223   C 0 I 146
s saiBol1.JH378388            11244 20 -    110772 TGTGTCACCTTCTTTGAATC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     276417 20 -   1771730 TGTGTCACCTTCTTTGAATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     347628 20 -    457564 tgtgtcaccttctctgaatc
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           157621 19 +  18854210 TGTGTCACCT-CTTTGAATC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57969550 20 -  94987271 TGTGTCAGTATTTTTAAAAT
i mm10.chr17               I 428 C 0
s canFam3.chr35            26262618 20 +  26524999 TGTGTCCTCTTCCCTGAATC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               179111 382 + 123392446 I
e dasNov3.JH582591            83219 492 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I

a score=834558.000000
s hg38.chr6_GL000254v2_alt   931420 88 +   4827813 CTGATGATATTCACTTCTTTATTTGACCTGatttattgggccccagacaccatg---------------------ctgagtgttg---------gggattcagctctggacaatgtca
s panTro5.chr6             29894213 88 + 175400573 CTGATGATATTCACTTCTTTATTTGACCTGatttattgggccccaggcaccatg---------------------ctgagtgttg---------gggattcagctctggacaatgtca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128086 88 + 173848474 CTGATGATATTCACTTCTTTATTTGACCTGatttattgggccccaggcaccatg---------------------ctgagtgttg---------gggattcagctctggacaatgtca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927486 88 +   6154872 CTGATGATATTCACTTCTTTATTTGACCTGatttattgggccccaggcaccatg---------------------ctgagtgttg---------gggattcagctctggacaaagtca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644324 81 + 122973662 CTGAGGATATTCATTTCTTTATTTGACCTGATTTATTGGGCCCCAAGCACCATG---------------------CTGAGTGTTG---------AGGATTCAGCTCTGGGC-------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125884 81 + 172585720 CTGATGATATTCATGTCTTTATTTGACCTGATTTATTGGGCCCCAGGCACCGTG---------------------CTGAGTGTTG---------AGAATTCAGCTCTAGGC-------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790565 81 - 170955103 CTGATGATATTCATGTCTTTATTTGACCTGATTTATTGGGCCCCAGGCACCGTG---------------------CTGAGTGTTG---------AGAATTCAGCTCTGGGC-------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836488 81 -   2996164 CTGATGATATTCATGTCTTTATTTGACCTGATTTATTGGGCCCCAGGCACCGTG---------------------CTGAGTGTTG---------AGAATTCAGCTCTGGGC-------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     585947 81 +    766320 CTAATGATATTCATGTCTTTATTTGACCTGATTTATTGGGCCCCAGGCACCGTG---------------------CTGAGTGTTG---------AGAATTCAGCTCTGGGC-------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043163 81 -  71996105 CTGATGATATTCATGTCTTTATTTGACCTGATTTATTGGGCCCCAGGCACCGTG---------------------CTGAGTGTTG---------AGAATTCAGCTCTGGGC-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     238060 81 +    290775 CTGATGATATTCATGTCTTTATTTGACCTGATTTATTGGGCCCCAGGCACCGTG---------------------CTGAGTGTTG---------AGAATTCAGCTCTGGGC-------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680041 81 -   3067355 CTGATGATATTCATTTCTTTATTTGACCTGATTTATTGGGCCCCAGGCACCATG---------------------CTGAGTGTTG---------AGAATTCAGCTCTGGGC-------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      57587 81 +    132061 ctgcCAATATTCATTTCTTTATTCGACTTGatttactgggccccaggcaccgtg---------------------ctgggtgttg---------aggattcagcTCTCGGC-------
i calJac3.chrUn_GL286223   I 146 C 0
s saiBol1.JH378388            11264 81 -    110772 CTGATGATattcatttctttattcgacctgatttattgggccccaggcaccgtg---------------------ctgggtgttg---------aggattcagcTCTTGGC-------
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     276437 81 -   1771730 TTGATGATATTCatttctttattcaacctgatttattgggccccaggcaccatg---------------------ctgggtgttg---------aggattcagcTCTTGGC-------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     347648 79 -    457564 cTGATGATATTCATTTCTTTATTCTACCTGATTTATT--GCCCCGGGCACCGTG---------------------CTGGGTGTTG---------AGGATTCAGCTCTTGGC-------
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           157640 99 +  18854210 TCAGTAATGTTTATTACTTTATTCGA-TTGA-TCATCAAGCCCCAAGTGCTGGGCTGGTTATTGAGGACATAGCACTGAGTGTTA---------AGGATATAGCACTGGA--------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57969570 77 -  94987271 CT--TGATGTTGGTTCCCTTATTCAACCCAACCTACTGCAGCACAAGCTCTTTA---------------------CAGGGTGTTA---------GGAA-GCAG-TCTGGGT-------
i mm10.chr17               C 0 I 5
s canFam3.chr35            26262638 74 +  26524999 CTGCTGATCTTGA--------------CTGGTGTGTTGAGCCCCTGGGATGGTG---------------------CTAGGCGGTGCCGGCCACTGGGGACCAGCACTGC---------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               179111 382 + 123392446 I
e dasNov3.JH582591            83219 492 +    102524 I
e proCoq1.NW_012152574v1     641358 11046 +    730504 I

a score=68918.000000
s hg38.chr6_GL000254v2_alt   931508 5 +   4827813 aatgt
s panTro5.chr6             29894301 5 + 175400573 aatgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128174 5 + 173848474 aatgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927574 5 +   6154872 aatgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644405 5 + 122973662 AATGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125965 5 + 172585720 AATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790646 5 - 170955103 AATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836569 5 -   2996164 AATGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586028 5 +    766320 AATGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043244 5 -  71996105 AATGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     238141 5 +    290775 AATGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680122 5 -   3067355 AATGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      57668 5 +    132061 AATGT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            11345 5 -    110772 AATGT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     276518 5 -   1771730 AACGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     347727 5 -    457564 AATGT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     652404 5 +    730504 AATGT
i proCoq1.NW_012152574v1   I 11046 C 0
s otoGar3.GL873550           157739 5 +  18854210 AATGT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               179111 382 + 123392446 I
e mm10.chr17               57969647 5 -  94987271 I
e dasNov3.JH582591            83219 492 +    102524 I
e canFam3.chr35            26262712 0 +  26524999 C

a score=45447.000000
s hg38.chr6_GL000254v2_alt   931513 5 +   4827813 cagtc
s panTro5.chr6             29894306 5 + 175400573 cggtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128179 5 + 173848474 cagtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927579 5 +   6154872 cagtc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644410 5 + 122973662 CGGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125970 3 + 172585720 --GTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790651 3 - 170955103 --GTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836574 3 -   2996164 --GTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586033 3 +    766320 --GTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043249 3 -  71996105 --GTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     238146 3 +    290775 --GTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680127 5 -   3067355 CGGTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      57673 5 +    132061 CAGTC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            11350 5 -    110772 CGGTC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     276523 5 -   1771730 CGGTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     347732 5 -    457564 TGGTC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     652409 5 +    730504 CGGTT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           157744 5 +  18854210 TGGTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57969652 3 -  94987271 --GTT
i mm10.chr17               I 5 I 4
s canFam3.chr35            26262712 2 +  26524999 ---TT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            83711 5 +    102524 CAGCC
i dasNov3.JH582591         I 492 C 0
e micMur3.chr6               179111 382 + 123392446 I

a score=2556184.000000
s hg38.chr6_GL000254v2_alt   931518 143 +   4827813 ctgccttTCAGATCCTTTCTACTGGGTGAGCCCTGGAGTGCTGGTTCTCCTCGCGGTGCTGCCTGTGCTCCTCCTGCAGATCACTCTTGGCCTCGTCTTCCTCTGCCTGCAGTACAGACTGAGAGGT------ACA--GGGCAGAGGGTGG
s panTro5.chr6             29894311 143 + 175400573 ctgcctttcagatcctttctactgggTGAGCCCTGGAGTGCTGGTTCTCCTCGCGGTGCTGCCTGTGCTGCTCCTGCAGATCGCTGTTGGCCTCGTCTTCCTCTGCCTGCAGTACAGACTGAGAGGT------ACA--GGGCAGAGGGTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128184 143 + 173848474 ctgcctttcagatcctttctactgggTGAGCCCTGGAGTGCTGGTTCTCCTCGCGGTGCTGCCTGTGCTGCTCCTGCAGATCGCTGTTGGCCTCGTCTTCCTCTGCCTGCAGTACAGACTGAGAGGT------ACA--GGGCAGAGGGTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927584 142 +   6154872 ctgcctttcagatcctttctactgggTGAGCCCTGGAGTGCTGGTTCTCCTCGCAGTGCTGCCTGTGCTCCTCCTGCAGATCACTGTTGGCCTCGTCTTCCTCTGCCTGCAGTACAGACTGAGAGGT------ACA---GGCAGAGGGTGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644415 143 + 122973662 CTGCCTTTCAGATCCTTTCTACTGGGTCAGCCCTGGAGTGCTGGTTCTCCTCGCGGTGCTGCCTGTGCTCCTCCTGCAGATCACTGTTGGCCTTGTCTTCCTCTGCCTGCAGTACAGACTGAGAGGT------ACA--GGGCAGAGGGTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30125973 143 + 172585720 CTGCCTTTCAGATCCCTTCTACTGGGTCAGCCCTGCAGTGCTGGTTCTCCTCGCGGTGCTGCCTGTGCTCCTTCTGCAGATCACTGTCGGCCTCGTCTTCCTCTGCCTGCAGTATAGACTGAGAGGT------ACA--AGGCGGAGGGTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790654 143 - 170955103 CTGCCTTTCAGATCCCTTCTACTGGGTCAGCCCTGCAGTGCTGGTTCTCCTCGCGGTGCTGCCTGTGCTCCTTCTGCAGATCACTGTCGGCCTCGTCTTCCTCTGCCTGCAGTATAGACTGAGAGGT------ACA--AGGCGGAGGGTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836577 143 -   2996164 CTGCCTTTCAGATCCCTTCTACTGGGTCAGCCCTGCAGTGCTGGTTCTCCTCGCGGTGCTGCCTGTGCTCCTTCTGCAGATCACTGTCGGCCTCGTCTTCCTCTGCCTGCAGTATAGACTGAGAGGT------ACA--AGGCGGAGGGTGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586036 143 +    766320 CTGCCTTTCAGATCCCTTCTACTGGGTCAGCCCTGCAGTGCTGGTTCTCCTCGCGGTGCTGCCTGTGCTCCTTCTGCAGATCACTGTCGGCCTCGTCTTCCTCTGCCTGCAGTATAGACTGAGAGGT------ACA--AGGCGGAGGGTGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043252 143 -  71996105 CTGCCTTTCAGATCCCTTCTACTGGGTCAGCCCTGCAGTGCTGGTTCTCCTCGCGGTGCTGCCTGTGCTCCTTCTGCAGATCACTGTCGGCCTCGTCTTCCTCTGTCTGCAGTATAGACTGAGAGGT------ACA--AGGCGGAGGGTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     238149 143 +    290775 CTGCCTTTCAGATCCCTTCTACTGGGTCAGCCCTGCAGTGCTGGTTCTCCTCGCGGTGCTGCCTGTGCTCCTTCTGCAGATCACTGTCGGCCTCGTCTTCCTCTGCCTGCAGTATAGACTGAGAGGT------ACA--AGGCGGAGGGTGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680132 143 -   3067355 CTGCCTTTCAGATCCCTTCTACTGGGTCAGCCCTGGAGTGCTGGTTCTCCTCGCGGTGCTGCCTGTGCTCCTTCTGCAGATCACTGTCGGCCTCGTCTTCCTCTGCCTGCAGTATAGACTGAGAGGT------ACA--AGGCGGAGGGTGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      57678 145 +    132061 TTGCCTTTCAGATCCCTTCTACTGGGTCAGCCCTGGAGTGCTGGTTCTCCTCGCAGTGCTCCCTGTGCTCTTCCTGCAGATCACTGTGGGCCTCGTCTTCCTCTACCTGCAGCATAGACTGAGAGGT------ACAGGGGGCAGAGGGTGG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            11355 143 -    110772 TTGCCTTTCAGATCCCTTCTACTGGGTCAGCTCTGGAGTGCTGGTTCTCCTCGCAGTGGTGCCTGTGCTCCTCCTGCAGATCAGCGTGGGTCTCCTCTTCCTCTGCCTGCAGCACAGACTGAGAGGT------ACA--GGGCAGAGGGTGG
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     276528 143 -   1771730 TTGCCTTTCAGATCCCTTCTACTGGGTCAGCCCTGGAGTGCTGGTTCTCCTCGCAGTGCTGCCTGTGCTCCTCCTGCAGATCACCGTGGGTCTCGTCTTCCTCTGCCTGCAGCATAGACTGAGAGGT------ACA--GGGCAGAGGGTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     347737 143 -    457564 TTGCCTTTCAGATCCCTTCTACTGGGTCAGCCCTGGAGTGCTGGTTCTCCTCGCAGTGCTGCCCGTGCTCCTCCTGCAGATCACCGTGGGTCTCGTCTTCCTCTGCCTGCAGCACAGACTGAGAGGT------ACA--GGGCAGAGGTTGG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               179493 148 + 123392446 CTGCCTTTCAGATCCCTTCTACTGGGTCAGCCCTGGAGTGCTGGTTCTCATCGCCGTGCTGCCGGTGCTCCTCCTGCAGATCGCGGTGGGCCTCCTCTTCCTCTGCCTGCAGCACAGACTGAGAGGTACGGGGACG--GGGCAGCGGGT-G
i micMur3.chr6             I 382 C 0
s proCoq1.NW_012152574v1     652414 143 +    730504 CTGCCTTTCAGATCCCTTCTACTGGGTCAGCCCTGGAGTGCTGGTTCTCATCGCCGTGCTCCCTGTCCTCCTCCTGCAGATCGCTGTGGGCCTCCTCTTCCTCTGCCTGCAGCACAGACTGAGAGGT------ACG--GGGCAGAGGGTGG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           157749 143 +  18854210 CTGCCTTTCAGATCCCTTCTACTGGGTCAACCCTGGAGTGCTGGTTCTCATCGCGGTGCTTCCTGTGCTCCTCCTGCAGATCTCTGTGGGCCTCCTCTTCCTCTGCCTGCAGCGCAGACTGAGAGGT------ACA--GAGCAGACAGTGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57969659 142 -  94987271 CTGCCTTTCAGATCCCTTCTATTGGGTCAACCCCGGTGTGCTGACTCTCATCGCACTTGTGCCTACGATCCTCCTGCAGGTCTCTGTAGGCCTTGTATTCCTCTTCCTGCAGCACAGACTGAGAGGT------AT---GGGCAGCGGGTGG
i mm10.chr17               I 4 C 0
s canFam3.chr35            26262714 131 +  26524999 CTCCCTTTCAGATCCCTTCTACTGGATCAACCCTGGAGTGCTGGTTGTGATCGCTGTCCTCCCTGTGCTCCTCCTGCAGATCGCAGTGGGCCTGGTCTACTTCTGCCTGCAGCACAGACTCAGAGGT------ATG--------------G
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            83716 141 +    102524 CTCCCTTTCAGATCCCTACTACTGGGTCAGCCCCGGGGTGCTGGCCGTCCTCGCCGTGCTGCCCGTGCTGCTCCTGCAGGCCGCCGTGGGGCTGCTCTTCCTCTGCCTGCAGCGGAGGCTGAGAGGT------A-A--GGGCTG-GGGTGG
i dasNov3.JH582591         C 0 I 139

a score=1460143.000000
s hg38.chr6_GL000254v2_alt   931661 139 +   4827813 GTGGATCAGGATCCTTTCTTTAAATGAGCTGGCTTCTTGGAGCTACACCACTTAACATGTA-TTTGTGAGTGACTTCTGGGTTCAGAAGTTCTTCTCACTATTGAGTGATAAAGaaaaaa--aataactccatgatgaaaga
s panTro5.chr6             29894454 136 + 175400573 GTGGATCAGGATCCTTTCTTTAAATGAGCTGGCTTCTTGGAGCTACACCACTTAACATGTA-TTTGTGAGTGACTTCTGGGTTCAGAAGTTCT---CACTATTGAGTGATAAAGAAAAAA--AATAACTCCATGATGAAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128327 135 + 173848474 GTGGATCAGGATCCTTTCTTTAAATGAGCTGGCTTCTTGGAGCTACACCACTTAACATGTA-TTTGTGAGTGACTTCTGGGTTCAGAAGTTCT---CACTATTGAGTGATAAAG-AAAAA--AATAACTCCATGATGAAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927726 135 +   6154872 GTGGATCAGGATCCTTTCTTTAAATGAGCTGGCTTCTTGGAGCTACACCACTTAACATGTA-TTTGTGAGTGACTTCTGGGTTCAGAAGTTCT---CACTATTGAGTG-TAAAGAAAAAA--AATAACTCCATGATGAAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644558 139 + 122973662 GTGGATCAGGATCCTTCCTTTAAATGAGCTGGCTTCTTGGAGCTACACCACTTAACATGTA-TTTGTGGGTGACTTCTGGGTTCAGAACTTCTTCTCACTATTGAGTGATAAAGAAAAAA--AATAACTCCATGATGAAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126116 139 + 172585720 GTGGATCAGGATCCTTCCTTTAAATGAGCTGGCTTCTTGGAGTTACACCACTAAACATGTA-TTTGTGAGTGACTTCCGGGTTCAGAACTTCTTCTCACTACTGAATGATAAAGAAAAAA--AATAACTCCATGATGAAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790797 139 - 170955103 GTGGATCAGGATCCTTCCTTTAAATGAGCTGGCTTCTTGGAGTTACACCACTAAACATGTA-TTTGTGAGTGACTTCCGGGTTCAGAACTTCTTCTCACTACTGAATGATAAAGAAAAAA--AATAACTCCATGATGAAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836720 139 -   2996164 GTGGATCAGGATCCTTCCTTTAAATGAGCTGGCTTCTTGGAGTTACACCACTAAACATGTA-TTTGTGAGTGACTTCCGGGTTCAGAACTTCTTCTCACTACTGAATGATAAAGAAAAAA--AATAACTCCATGATGAAAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586179 138 +    766320 GTGGATCAGGATCCTTCCTTTAAATGAGCTGGCTTCTTGGAGTTACACCACTAAACATGTA-TTTGTGAGTGACTTCTGGGTTCAGAACTTCTTCTCACTACTGAGTGATAAAG-AAaaa--aataactccataatgaaaga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043395 139 -  71996105 GTGGATCAGGATCCTTCCTTTAAATGAGCTGGCTTCTTGGAGTTACACCACTAAACATGTA-TTTGTGAGTGACTTCTGGGTTCAGAACTTCTTCTCACTACTGAGTGATAAAGAAAAAA--AATAACTCCATGATGAAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     238292 139 +    290775 GTGGATCAGGATCCTTCCTTTAAATGAGCTGGCTTCTTGGAGTTACACCACTAAACATGTA-TTTGTGAGTGACTTCTGGGTTCAGAACTTCTTCTCACTACTGAGTGATAAAGaaaaaa--aataactccataatgcaaga
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680275 139 -   3067355 GTGGATCAGGATCCTTCCTTTAAATGAGCTGGCTTCTTGGAGTTACACCGCTAAACATGTA-TTTGTGAGTGACTTCTGGGTTCAGAACTTCTTCTCACTACTGAGTGATAAAGAAAAAA--AATAACTCCATGATGAAAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      57823 136 +    132061 GTGGGTCAGGATCATTT-----AATGAGCTGGCTTCTTGGAGCGACACCACTTAACATGTA-TTTGTGAGTGACTTCTGGGTTCAGAACTTCTTCTCATTATTGAATGATAAAGAAaaaaataataactccatgatgaaaaa
i calJac3.chrUn_GL286223   C 0 I 2
s saiBol1.JH378388            11498 139 -    110772 GTGGGTCAGGATCCTTCCTTCACATAAGCTGACTTCTTGGATTGACACCACTTAACATGTA-TTTGTGAGTGACTGCTGGGTTCAGAAAGTCTTCTCATTATTGAGTGATAAAGAAAAAA--AAGAACTCCATGATGAAAAA
i saiBol1.JH378388         C 0 I 2
s cebCap1.NW_016107755v1     276671 139 -   1771730 GTGGGTCAGGATCCTTCCTTTACATGAGCTGGCTTCTTGGATCAACACCACTTAACATGTG-TTTGTGAGTGACTTCTGGGTTCAGAAAGTCTTCTCATTATTGAGTGATAAAGAAGAAA--AAGAACTCCATGATAAAAAA
i cebCap1.NW_016107755v1   C 0 I 52
s aotNan1.NW_018509740v1     347880 133 -    457564 GTGGGTCAGGATCATTT-----AATGAGCTGGCTTCTTGGAGCGACACCACTTAACATGTA-TTTGTGAGTGACTTCTGGGTTCAGAA---CTTCTCATTATTGAGTGATAAAGAAaaaaataataactctatgatgaaaaa
i aotNan1.NW_018509740v1   C 0 I 2
s micMur3.chr6               179641  96 + 123392446 GCGGATCAAGATCCTTCGCTAAAATGAGCTGGTCTCTTGGAGCTACATCAGTTAACAGTTA--TTTTGAGTGACTTCTGGGTT---------------------------------------TAGAACTCCAGAGTG-----
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     652557 101 +    730504 GCGGATCAAGATCCTTCCCTGAAGTGAGCTGGTCTCTTGGAGCTACATCAGTTAACGGTTA--TTTTGAGTGACTTCTGGGTT---------------------------------------TAGAACTCCATAATGacagc
i proCoq1.NW_012152574v1   C 0 I 2
s otoGar3.GL873550           157892 101 +  18854210 GCAGATGAAGATCCTTCCCTGAAATGAGCTGGCCTCTTGGAGCTACATCAGTTAACGGTTA-TTTTTGAGTGACTTCTGTG-T---------------------------------------TAGAACTCCATAATGacagc
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               57969801  74 -  94987271 GTCTGTCAGGATCGTTTCCT-----------GGTTCTTAGGG------------ACAGTTAATCCTTAAGT--CTTCTCAGTTCAGAACTACATAACAG-------------------------------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26262845  84 +  26524999 GCTGCTCAGGACCTT----------------GCCTCTTGGAACTTGAGGGACTCATATTTA-GCTTTGGGTGACTT-TGGGTTCA-------------------------------------CATA--TCCACAATGACCA-
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            83857 139 +    102524 I

a score=99490.000000
s hg38.chr6_GL000254v2_alt   931800 8 +   4827813 gttttaca
s panTro5.chr6             29894590 8 + 175400573 GTtttaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128462 8 + 173848474 GTtttaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927861 8 +   6154872 GTtttaca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644697 8 + 122973662 GTtttaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126255 8 + 172585720 GTtttaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790936 8 - 170955103 GTtttaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836859 8 -   2996164 GTtttaca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586317 8 +    766320 gttttaca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043534 8 -  71996105 GTtttaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     238431 8 +    290775 gttttaca
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680414 8 -   3067355 GTtttaca
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      57961 8 +    132061 gtttaaca
i calJac3.chrUn_GL286223   I 2 C 0
s saiBol1.JH378388            11639 8 -    110772 GTTTTACA
i saiBol1.JH378388         I 2 I 322
s aotNan1.NW_018509740v1     348015 8 -    457564 gttttaca
i aotNan1.NW_018509740v1   I 2 C 0
s proCoq1.NW_012152574v1     652660 8 +    730504 gttttata
i proCoq1.NW_012152574v1   I 2 C 0
s otoGar3.GL873550           157995 8 +  18854210 gttttgta
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               57969875 7 -  94987271 GTTCTAC-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26262929 8 +  26524999 GTTTCATG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               179737 0 + 123392446 C
e dasNov3.JH582591            83857 139 +    102524 I
e cebCap1.NW_016107755v1     276810 52 -   1771730 I

a score=60817.000000
s hg38.chr6_GL000254v2_alt   931808 6 +   4827813 tcttac
s panTro5.chr6             29894598 6 + 175400573 tcttac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128470 6 + 173848474 tcttac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927869 6 +   6154872 tcttac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644705 6 + 122973662 tcttac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126263 6 + 172585720 tctcac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790944 6 - 170955103 tctcac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836867 6 -   2996164 tctcac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586325 6 +    766320 tctcac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043542 6 -  71996105 tctcac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     238439 6 +    290775 tctcac
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680422 6 -   3067355 tctcac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      57969 6 +    132061 gctcac
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     348023 6 -    457564 gcttac
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               179737 4 + 123392446 --CTAC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     652668 6 +    730504 tcttac
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           158003 6 +  18854210 tcttac
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26262937 6 +  26524999 TCTTCC
i canFam3.chr35            C 0 C 0
e mm10.chr17               57969882 0 -  94987271 C
e dasNov3.JH582591            83857 139 +    102524 I
e saiBol1.JH378388            11647 322 -    110772 I
e cebCap1.NW_016107755v1     276810 52 -   1771730 I

a score=34721.000000
s hg38.chr6_GL000254v2_alt   931814 4 +   4827813 ggaa
s panTro5.chr6             29894604 4 + 175400573 agaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128476 4 + 173848474 agaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927875 4 +   6154872 ggaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644711 4 + 122973662 ggaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126269 4 + 172585720 ggaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790950 4 - 170955103 ggaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836873 4 -   2996164 ggaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586331 4 +    766320 ggaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043548 4 -  71996105 ggaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     238445 4 +    290775 ggaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680428 4 -   3067355 ggaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      57975 4 +    132061 tgaa
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            11969 4 -    110772 GGTT
i saiBol1.JH378388         I 322 C 0
s aotNan1.NW_018509740v1     348029 4 -    457564 tgaa
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               179741 4 + 123392446 TGAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     652674 4 +    730504 tgaa
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           158009 4 +  18854210 tgaa
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26262943 4 +  26524999 CAAA
i canFam3.chr35            C 0 C 0
e mm10.chr17               57969882 0 -  94987271 C
e dasNov3.JH582591            83857 139 +    102524 I
e cebCap1.NW_016107755v1     276810 52 -   1771730 I

a score=701747.000000
s hg38.chr6_GL000254v2_alt   931818 60 +   4827813 tgctttcatatgaataatcggacctagcatttccctatgagctaactatgccatatagta
s panTro5.chr6             29894608 60 + 175400573 tgctttcatatgaataatcggacctagcatttccctatgagctaactatggcatatagta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128480 60 + 173848474 tgctttcatatgaataatcggacctagcatttccctatgagctaactatggcatatagta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927879 60 +   6154872 tgctttcatatgaataatcggacctagcatttccctatgagctaactatggcatatagta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644715 60 + 122973662 tgctttcatatgaataatcggacttagcatttccctatgagctaactatggcatatagta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126273 59 + 172585720 tgctttcatatgaataagcggacccagc-tttccctatgagctaactatggcatagagta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29790954 59 - 170955103 tgctttcatatgaataagcggacccagc-tttccctatgagctaactatggcatagagta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836877 59 -   2996164 tgctttcatatgaataagcggacccagc-ttcccctatgagctaactatggcatagagta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586335 59 +    766320 tgctttcatatgaataagcggacccagc-tttccctatgagctaactatggcataaagta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043552 59 -  71996105 tgctttcatatgaataagcggacccagc-tttccctatgagctaactatggcatagagta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     238449 59 +    290775 tgctttcatatgaataagcggacccagc-tttccctatgagctaactatggcatagagta
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680432 59 -   3067355 tgctttcatatgaataagcggacccagc-tttccctatgagctaactatggcatacagta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      57979 60 +    132061 ggttttaatatgaatgaaagaacctagcatttccctatgagctaagtatggtatatagca
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            11973 57 -    110772 TGTTTTCATATgaataaaagaacctagcatttc---atgagctaaatgtggcatatagca
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     276862 60 -   1771730 TGTTTTCATATGAATAAAAGAACCTAGCATTTccctatgagctaactatggcatatagca
i cebCap1.NW_016107755v1   I 52 C 0
s aotNan1.NW_018509740v1     348033 60 -    457564 tgttttcatatgaataaaagaacctagcatttccctatgagctaactatggcatatagca
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               179745 60 + 123392446 TGCTTTCGTCTGAGTAATAGGGCCTTGCATTTccctatggggtaagtatggcacataata
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     652678 59 +    730504 tgctttcacctggataataggaccttgcatttccctat-gggtaagtatggcatataata
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           158013 56 +  18854210 tgctttcatataaataataggacctcacattttcctatgaggtaa----ggcatatagca
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57969882 42 -  94987271 ----------TGAACAattt-accttgcatctacctgtggagtaatagtgcc-------a
i mm10.chr17               C 0 C 0
s canFam3.chr35            26262947 51 +  26524999 TGCTCTCATTTCTAAGACAGGA------ATTTCCCTGTGAGGTAGGGCTGAC---CAGTG
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            83857 139 +    102524 I

a score=2268843.000000
s hg38.chr6_GL000254v2_alt   931878 163 +   4827813 accccattttacagaggatacaactgaggccaggagtagttcagtgacttactcaaaccgatataactta----taagtggtagagctgaggc-------------ct--cTGTATCATA------CCTAGCAGCTCCATGCAACTTGGGAGAGTGTGAGCTTCGAAGTCAGACAGGTCTAGGCTA-------------------------TT
s panTro5.chr6             29894668 163 + 175400573 accccattttacagaggatacaactgaggccaggagtagttcagtgacttactcaaaccgatataactta----taagtggtagagctggggc-------------CT--CTGTATCATA------CCTAGCAGCTCCATGCAACTTGGGAGAGTGTGAGCTTCAAAGTCAGACAGGTCTAGGCTA-------------------------TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128540 163 + 173848474 accccattttacagaggatacaactgaggccaggagtagttcagtgacttactcaaacagatataactta----taagtggtagagctggggc-------------CT--CTGTATCATA------CCTAGCAGCTCCATGCAACTTGGGAGAGTGTGAGCTTCAAAGTCAGACAGGTCTAGGCTA-------------------------TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5927939 163 +   6154872 accccattttacagaggatacaactgaggccaggagtagttcagtgacttactcaaaccgatataactta----taagtggtagagctggggc-------------CT--CTGTATCATA------CCTAGCAGCTCCATGCAACTTGGGAGAGTGTGAGCTTCAAAGTCAGACAGGTCTAGGCTA-------------------------TT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644775 163 + 122973662 accccattttacagaggatgcaactgaggccaggagtagttcagtgacttactcaaaccgatataactta----taagtggtagagctgaggc-------------ct--cTGTGTCATA------CGTAGCAGCTCTATGCAACTTGGGAGTGTGTGAGCTTCAAAGTCAGACAGGTCTAGGCTA-------------------------TT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126332 163 + 172585720 accccattttacagaggatacaactgaggccaggagtagttcagtgacttactcagaccaatataacttg----taagtggtagagctgaggc-------------ct--ctggctcata------cctagcagctccaTGCAACTTGGGAGAGTGTGAGCTTCAAAGTCAGACAGGTCTAGGCTA-------------------------TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791013 163 - 170955103 accccattttacagaggatacaactgaggccaggagtagttcagtgacttactcagaccaatataacttg----taagtggtagagctgaggc-------------ct--ctggctcata------cctagcagctccaTGCAACTTGGGAGAGTGTGAGCTTCAAAGTCAGACAGGTCTAGGCTA-------------------------TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2836936 163 -   2996164 accccattttacagaggatacaactgaggccaggagtagttcagtgacttactcagaccaatataacttg----taagtggtagagctgaggc-------------ct--cTGGCTCATA------CTTAGCAGCTCCATGCAACTTGGGAGAGTGTGAGCTTCAAAGTCAGACAGGTCTAGGCTA-------------------------TT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586394 163 +    766320 accccattttacagaggatacaactgaggccaggagtagttcagtgacttactcagaccaatataagttg----taagtggtagagctgaggc-------------ct--cTGTATCATA------CCTAGCAGCTCCATGCAACTTAGGAGAGTGTGAGCTTCAAAGTCAGACAGGTCTAGGCTA-------------------------TT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043611 162 -  71996105 accccatttta-agaggatacaactgaggccaggagtagttcagtgacttactcagaccaatataacttg----taagtggtagagctgaggc-------------ct--TTGGCTCATA------CCTAGCAGCTCCATGCAGCTTGGGAGAGTGTGAGCTTCAAAGTCAGACAGGTGTAGGCTA-------------------------TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     238508 163 +    290775 accccattttacagaggatacaactgaggccaggagtagttcagtgacttactcagaccaatataacttg----taagtggtagagctgaggc-------------ct--cTGTATCATA------CCTAGCAGCTCCATGCAACTTGGGAGAGTGTGAGCTTCAAAGTCAGACAGGTCTAGGCTA-------------------------TT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680491 163 -   3067355 accccattttacagaggatacaactgaggccaggagtagttcagtgacttactcagaccaatataacttg----taagtggtagagttgaggc-------------ct--cTGTATCATA------CCTAGCAGCTCCATGCGACTTGGGAGAGTATGAGCTTCAAAGTCAGACAGGTCTAGGCTA-------------------------TT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      58039 163 +    132061 accccattttacaaagaatgcaactgaggccaggattagttcagtgacttactgcaactgatatagctta----taagtggtagagctgaggc-------------ct--cTGTATCATA------CCTGGCAGCTCCATGCAACTTGGGAGAGTGTGAGCTTCAAAGTTAGACAGGTCTAGGCTA-------------------------TT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            12030 167 -    110772 accccattttacaaagaatgcaacagaggccaggattagttcagtgacttactcaaactgatacagcttataagtaagtggtagagctgaggc-------------ct--TTGTATCATA------CCTGGCAGCTCCATGCAACTTGGGAAAGTTTGAGCTTCAAAGTCAGACAGGTCTAGGCTA-------------------------TT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     276922 163 -   1771730 accccgttttacaaagaatgcaactgaggccaggattagttccgtgacttactcaaactgatatagcttg----taagtggtagagttgaggc-------------ct--cTGTATCATA------CCCAGCAGCTCCATGCAACTTGGGAGAGTGTGAGCTTCAAAGTCAGACAGGTCTAGGCTA-------------------------TT
i cebCap1.NW_016107755v1   C 0 I 307
s aotNan1.NW_018509740v1     348093 163 -    457564 atgccactttacaaagaatgcgactgaggccaggagtagttcagtgacttactcaaactgatatagctta----taagtggtagagctgaagc-------------ct--cTGTATCATA------CCTGGCAGCTCCATGCAACTTGGGAGAGTGTGAGCTTCAAAGTTAGGCAAGTCTAGGCTA-------------------------TT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               179805 162 + 123392446 accccattttacagaggagacaactgaggccaagagtggctcagtgactcactcaaagtgacacagctta----tgagtggcagagcgcaggC-------------CG--CTGTATCATC------CCTAGCAGCTCCTTGCAAC-TGGGAGAGTGTGAGTTTCAAAGTCAGACAGGCTGAGGCTA-------------------------TT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     652737 162 +    730504 accccattttacagaggagacaactgaggccaagagtggctcagtgactcattcaaagtgacacagcttg----taagtggtagagcTCACGC-------------CC--CTGTACCATC------CCCAGCAGCTCCTTGCAAC-TGGGAGAGTGTGAGTTTCAAAGTAGGACGGGCCAAGGCTA-------------------------TC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           158069 187 +  18854210 accccattttacagaagaggcaactgaggccaagagtggctcagtgacttactctaagtgacacagctta----tgagtggcagggcTCAAGC-------------CC--CTGTACCATA------CCAAGCAGCTCCAAGCAAC-TGGGAAAGTGTGAGCCTTAAAGCAGGACAGGCCTAGGCTATTGGGGGGGGGGGGTATTTATATTTTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57969924 155 -  94987271 gcctca--ttgccgaggaagaaattgagtctaggggtggattggtgacttgctcaga-tgacatg--tta----caggcagtagagcTCTGCC-------------CT--CCATA--GTC------CTTAGCAGCTTCATGAAAC-TGGGTGAGTAGTCTCTTCAAAGTCAGTCAGGTCTAAAATA-------------------------CT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26262998 156 +  26524999 AGCCTA--------------------AGGCCACT-GTGGTTCAAC-ATTCTTGTAAGCGTTTGCACCTTG----AACATGGCAGAGCCCGGGCCTGAAGTCCCCATCT--CTGGTCCCTGAGCTGCCCCAGCAGCTTCA--CAGCCTGGGATGGT--GAACCTGAAGGCCAGACATGTTGGTGCCT-------------------------AA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            83996 118 +    102524 GCCCCA---GGCGGGGTCCGCGGCTGGGACCAGCGGCAGCTC--------------------------------------GCAGGGCCCACGC-------------GTGCCCGGCTTCCA------CCCGGCAGCTCCGTGCA---CGGGCAGGGG-------CAGGTCCAGGCCGGTCTAGGCTA-------------------------AC
i dasNov3.JH582591         I 139 C 0

a score=51370.000000
s hg38.chr6_GL000254v2_alt   932041 3 +   4827813 AGG-
s panTro5.chr6             29894831 3 + 175400573 AGG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128703 3 + 173848474 AGG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928102 3 +   6154872 AGG-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644938 3 + 122973662 AGG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126495 3 + 172585720 AGG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791176 3 - 170955103 AGG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837099 3 -   2996164 AGG-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586557 3 +    766320 AGG-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043773 3 -  71996105 AGG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     238671 3 +    290775 AGG-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680654 3 -   3067355 AGG-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      58202 3 +    132061 AGG-
i calJac3.chrUn_GL286223   C 0 I 312
s saiBol1.JH378388            12197 3 -    110772 AGG-
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     277392 3 -   1771730 aGG-
i cebCap1.NW_016107755v1   I 307 C 0
s aotNan1.NW_018509740v1     348256 3 -    457564 AGG-
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               179967 3 + 123392446 AGG-
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     652899 3 +    730504 AGG-
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           158256 3 +  18854210 AGG-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57970079 3 -  94987271 AGG-
i mm10.chr17               C 0 I 1
s canFam3.chr35            26263154 3 +  26524999 TGG-
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            84114 3 +    102524 -GGA
i dasNov3.JH582591         C 0 C 0

a score=25442.000000
s hg38.chr6_GL000254v2_alt   932044 2 +   4827813 AG
s panTro5.chr6             29894834 2 + 175400573 AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128706 2 + 173848474 AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928105 2 +   6154872 AG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644941 2 + 122973662 AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126498 2 + 172585720 AG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791179 2 - 170955103 AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837102 2 -   2996164 AG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586560 2 +    766320 AG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043776 2 -  71996105 AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     238674 2 +    290775 AG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680657 2 -   3067355 AG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      58517 2 +    132061 aG
i calJac3.chrUn_GL286223   I 312 C 0
s saiBol1.JH378388            12200 2 -    110772 AG
i saiBol1.JH378388         C 0 I 323
s cebCap1.NW_016107755v1     277395 2 -   1771730 AG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     348259 2 -    457564 AG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               179970 2 + 123392446 AG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     652902 2 +    730504 AA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           158259 2 +  18854210 AG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57970083 1 -  94987271 A-
i mm10.chr17               I 1 C 0
s canFam3.chr35            26263157 2 +  26524999 AG
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            84117 2 +    102524 GG
i dasNov3.JH582591         C 0 C 0

a score=16670.000000
s hg38.chr6_GL000254v2_alt   932046 1 +   4827813 T
s panTro5.chr6             29894836 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128708 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928107 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644943 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126500 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791181 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837104 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586562 1 +    766320 T
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043778 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     238676 1 +    290775 T
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680659 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      58519 1 +    132061 T
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            12525 1 -    110772 T
i saiBol1.JH378388         I 323 C 0
s cebCap1.NW_016107755v1     277397 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     348261 1 -    457564 T
i aotNan1.NW_018509740v1   C 0 I 944
s micMur3.chr6               179972 1 + 123392446 T
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     652904 1 +    730504 T
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           158261 1 +  18854210 T
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57970084 1 -  94987271 T
i mm10.chr17               C 0 I 409
s dasNov3.JH582591            84119 1 +    102524 T
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26263159 1 +  26524999 I

a score=571077.000000
s hg38.chr6_GL000254v2_alt   932047 63 +   4827813 TTTGA----ATAAAGATACTGAAGTGAAAGTCTCTACCACACAGTAGG------------------CGTTCGAAAATTGTTTCC--T
s panTro5.chr6             29894837 63 + 175400573 TTTGA----ATAAAAATACTGAAGTGAAAGTCTCTACCACACAGTAGG------------------CATTCGAAAATTGTTTCC--T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128709 63 + 173848474 TTTGA----ATAAAAATACTGAAGTGAAAGTCTCTACCACACAGTAGG------------------CATTCGAAAATTGTTTCC--T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928108 63 +   6154872 TTTGA----ATAAAAATACTGAAGTGAAAGTCTCTACCACACAGTAGG------------------CATTCGAAAATTGTTTCC--T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74644944 63 + 122973662 TTTGA----ATAAAGATACTGAAGTGAAAGTCTCTACCACACAGTAGG------------------CGTTCGAAAATTGTTTCC--T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126501 60 + 172585720 TTTGA----AT--AGATACTGAAGTGAAAGTCTGTGCTACACAGTAGG------------------CATTCAAACATTGTTTCC---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791182 60 - 170955103 TTTGA----AT--AGATACTGAAGTGAAAGTCTGTGCTACACAGTAGG------------------CATTCAAACATTGTTTCC---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837105 64 -   2996164 TTTGA----AT--AGATACTGAAGTGAAAGTCTGTGCTACACAGTAGGCA--------------TTCATTCAAACATTGTTTCC---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586563 60 +    766320 TTTGA----AT--AGATGCTGAAGTGAAAGTCTGTGCTACACAGTAGG------------------CATTCAAACATTGTTTCC---
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043779 65 -  71996105 TTTGAATAGAT--AGATACTGAAGTGAAAGTCTGTGCCACACAGTAGG------------------CATCCAAACATTGTTTCCT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     238677 61 +    290775 TTTGA----AT--AGATACTGAAGTAAAAGTCTGTGCTACACAGTAGG------------------CATTCAAACATTGTTTCCT--
i manLeu1.NW_012099233v1   C 0 I 673
s colAng1.NW_012115566v1    2680660 61 -   3067355 TTTGA----AT--AGATACTGAAGTGAAAGTGTCTGCTACACAGTAGG------------------CATTCAAACATTGTTTCC-T-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      58520 62 +    132061 GTTAA----ATAAAGATACTGAAGTGAAAGTCCCTACCACACAGTAGT------------------AGTTGAAAAGTTGTTTCC---
i calJac3.chrUn_GL286223   C 0 I 1
s saiBol1.JH378388            12526 61 -    110772 GTTAA----ATAAAGATGCTGAAGTGAAAGTCCCTACCCCACAGTAGT------------------CGTTGAAGA-TTGTTTCC---
i saiBol1.JH378388         C 0 I 1
s cebCap1.NW_016107755v1     277398 61 -   1771730 GTTAA----ATAAAGATACTGAAGTGAAAATCCCTACCACACAGTAGT------------------CGTTGAAAA-TTGTTTCC---
i cebCap1.NW_016107755v1   C 0 I 1
s micMur3.chr6               179973 54 + 123392446 ATTAA----CTAAAGACTCTGAAATGAAG--------CACATGGTAGG------------------TGTTCAAAAATTGTTTCC---
i micMur3.chr6             C 0 I 1
s proCoq1.NW_012152574v1     652905 54 +    730504 ATTAA----ATAAAGACGCTGAAATGAAA--------CACATGGTAGG------------------TGTTCAAAAATTGTTTCC---
i proCoq1.NW_012152574v1   C 0 I 1
s otoGar3.GL873550           158262 62 +  18854210 TTTAA----ATAAAGATACTGAAGTGAAAGTCTCTACCACATGGTAGG------------------TGTTCAAAAATTGTTTCC---
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57970494 62 -  94987271 TTTTA----ATAAAGATTCTGAAATGAAAGTCTTTGCCACATGGAATG------------------TATTAAACAACTGGTTCC---
i mm10.chr17               I 409 I 4
s canFam3.chr35            26263160 61 +  26524999 TTTCC----ACGAGGACAC-GGAGTGAATGTCCCTGCCACATGGGGGG------------------TGTTCTCAGCTTGTTTCC---
i canFam3.chr35            I 1 I 1
s dasNov3.JH582591            84120 72 +    102524 -TTAG----GTGAGAAGTC---AGGGAAAGGCTCT----CGCTGTAGGAAAAGCGGAGCGGTGGTTGGCCCTAAACGCGTCCTC---
i dasNov3.JH582591         C 0 C 0
e aotNan1.NW_018509740v1     348262 944 -    457564 I

a score=22574.000000
s hg38.chr6_GL000254v2_alt   932110 3 +   4827813 CTT
s panTro5.chr6             29894900 3 + 175400573 CCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128772 3 + 173848474 CCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928171 3 +   6154872 CCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645007 3 + 122973662 CCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126561 1 + 172585720 --T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791242 1 - 170955103 --T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837169 1 -   2996164 --T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586623 1 +    766320 --T
i cerAty1.NW_012002711v1   C 0 C 0
s calJac3.chrUn_GL286223      58583 3 +    132061 CCT
i calJac3.chrUn_GL286223   I 1 C 0
s saiBol1.JH378388            12588 3 -    110772 CCT
i saiBol1.JH378388         I 1 C 0
s cebCap1.NW_016107755v1     277460 3 -   1771730 CCT
i cebCap1.NW_016107755v1   I 1 C 0
s micMur3.chr6               180028 3 + 123392446 CCT
i micMur3.chr6             I 1 C 0
s proCoq1.NW_012152574v1     652960 3 +    730504 CCT
i proCoq1.NW_012152574v1   I 1 C 0
s otoGar3.GL873550           158325 3 +  18854210 CCT
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57970560 3 -  94987271 TCT
i mm10.chr17               I 4 C 0
s canFam3.chr35            26263222 3 +  26524999 GCT
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            84192 3 +    102524 CCT
i dasNov3.JH582591         C 0 C 0
e aotNan1.NW_018509740v1     348262 944 -    457564 I
e colAng1.NW_012115566v1    2680721 0 -   3067355 C
e manLeu1.NW_012099233v1     238738 673 +    290775 I
e chlSab2.chr17            29043844 0 -  71996105 C

a score=68132.000000
s hg38.chr6_GL000254v2_alt   932113 4 +   4827813 TCTC
s panTro5.chr6             29894903 4 + 175400573 TCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128775 4 + 173848474 TCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928174 4 +   6154872 TCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645010 4 + 122973662 TCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126562 4 + 172585720 TCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791243 4 - 170955103 TCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837170 4 -   2996164 TCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586624 4 +    766320 TCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043844 4 -  71996105 TCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     239411 4 +    290775 TCTC
i manLeu1.NW_012099233v1   I 673 C 0
s colAng1.NW_012115566v1    2680721 4 -   3067355 TCTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      58586 4 +    132061 TCTC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            12591 4 -    110772 TCTC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     277463 4 -   1771730 TCTC
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               180031 4 + 123392446 TCTT
i micMur3.chr6             C 0 I 3
s proCoq1.NW_012152574v1     652963 4 +    730504 TTTT
i proCoq1.NW_012152574v1   C 0 I 3
s otoGar3.GL873550           158328 4 +  18854210 TTTC
i otoGar3.GL873550         C 0 I 269
s mm10.chr17               57970563 4 -  94987271 TTTC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26263225 4 +  26524999 TCTC
i canFam3.chr35            C 0 I 3
s dasNov3.JH582591            84195 4 +    102524 TCTC
i dasNov3.JH582591         C 0 C 0
e aotNan1.NW_018509740v1     348262 944 -    457564 I

a score=604713.000000
s hg38.chr6_GL000254v2_alt   932117 49 +   4827813 CATTCAACACTGAGGAC-TCA---------GGTTCAGCTGCTGATGAAGCTCCTCTTTT
s panTro5.chr6             29894907 49 + 175400573 CATTCAACACTGAGGAC-TCA---------GGTCCAGCTGCTGATGAAGCTCCTCTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128779 49 + 173848474 CATTCAACACTGAGGAC-TCA---------GGTCCAGCTGCTGATGAAGCTCCTCTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928178 49 +   6154872 CATTCAACACTGAGGAC-TCA---------GGTCCAGCTGCTGATGAAGCTCCTCTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645014 49 + 122973662 CATTCAACACTGAGGAC-TCA---------GGTTCAGCTGCTGATGAAGCTCCTCTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126566 49 + 172585720 CATTCAACACTGAGGAC-TCA---------GGTTCAGCTGCTGATGACGCTCCTCTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791247 49 - 170955103 CATTCAACACTGAGGAC-TCA---------GGTTCAGCTGCTGATGACGCTCCTCTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837174 49 -   2996164 CATTCAACACTGAGGAC-TCA---------GGTTCAGCTGCTGATGACGCTCCTCTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586628 49 +    766320 CATTCAACACTGAGGAC-TCA---------GGTTCAGCTGCTGATGACGCTCCTCTTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043848 49 -  71996105 CATTCAACACTGAGGAC-TCA---------GGTTCAGCTGCTGATGACGCTCCTCTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     239415 49 +    290775 CATTCAACACTGAGGAC-TCA---------GGTTCAGCTGCTGATGACGCTCCTCTTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680725 58 -   3067355 CATTCAACACTGAGGAC-TCAGGTTCAGCTGGTTCAGCTGCTGATGACGCTCCTCTTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      58590 49 +    132061 CATTCAGCACTGAGGAT-TCA---------GGTTCAGCTGTTGATGAGGTTCCTCTTTT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            12595 49 -    110772 CATTCAGCACTGAGGAT-TCA---------GGTTCAGCTGTTGATGAAGTACCTCTTTT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     277467 49 -   1771730 CATTCAGCACTGAGGAT-TCA---------GGTTCAGCTGTTGATGAAGTTCCTCTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               180038 49 + 123392446 CATCCAACACTGAGGAT-TCA---------GGTTCAGCTGTCCCTGAAGCTCCTCTTTT
i micMur3.chr6             I 3 I 508
s proCoq1.NW_012152574v1     652970 49 +    730504 CGTTCAACATTGAGGAC-TCA---------GGTTCAGCTGTCCCTGAAGTTCCTCTTTT
i proCoq1.NW_012152574v1   I 3 C 0
s otoGar3.GL873550           158601 49 +  18854210 CATTAACCATTGAGGAA-TTG---------TGTTCAGCTCTCTATGAAGCTCCACCTTT
i otoGar3.GL873550         I 269 C 0
s mm10.chr17               57970567 47 -  94987271 CATTCAACTATGAACATAATA---------AATTCAGCTGTAGAGGAAGTTGTTTT---
i mm10.chr17               C 0 C 0
s canFam3.chr35            26263232 38 +  26524999 CATGCAACACGGAGGAC-------------TGTCCA--------TGAAGCTCCTCTACT
i canFam3.chr35            I 3 C 0
s dasNov3.JH582591            84199 28 +    102524 CATCCAGCGC--GGGGC-TCC---------GGTCGGCCAG-------------------
i dasNov3.JH582591         C 0 C 0
e aotNan1.NW_018509740v1     348262 944 -    457564 I

a score=183285.000000
s hg38.chr6_GL000254v2_alt   932166 13 +   4827813 TTGCCTAGAGCTT
s panTro5.chr6             29894956 13 + 175400573 TTGCCTAGAGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128828 13 + 173848474 TTGCCTAGAGGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928227 13 +   6154872 TTGCCTAGAGCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645063 13 + 122973662 TTGCCTAGAGCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126615 13 + 172585720 GTGCCTAGAGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791296 13 - 170955103 GTGCCTAGAGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837223 13 -   2996164 GTGCCTAGAGCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586677 13 +    766320 GTGCCTAGAGCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043897 13 -  71996105 GTGCCTAGAGCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     239464 13 +    290775 GTGCCTAGAGCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680783 13 -   3067355 GTGCCTAGAGCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      58639 13 +    132061 GTGCCTAGAGCTT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            12644 13 -    110772 GTGCCTAGAGCTT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     277516 13 -   1771730 GTGCCTAGAGCTT
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012152574v1     653019 13 +    730504 GCGCCCAGAGCTT
i proCoq1.NW_012152574v1   C 0 I 132
s otoGar3.GL873550           158650 13 +  18854210 GTGCCCAGAGCTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57970614 13 -  94987271 GTGCCCAGAGCCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26263270 13 +  26524999 GCACCTGAAGATA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            84227 12 +    102524 -TGCCCAGAGCCT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               180087 508 + 123392446 I
e aotNan1.NW_018509740v1     348262 944 -    457564 I

a score=1526113.000000
s hg38.chr6_GL000254v2_alt   932179 172 +   4827813 TCATTCTGAGCCTTCTCCTCCTACCAAGTGTCTCC----CCAATGC-CAGAGCAGGAAGAGTCTTCACTCCTCCCCATGCCCCACCTCCCATTTGTTACTAAGAGGAGAGGAGAAAGTAGCAAGGAGGGTATGGGGAATGTTCTG--GGGGAATGGGTGTTG-----GT---GC--------GATCAACAACAAA
s panTro5.chr6             29894969 172 + 175400573 TCATTCTGAGCCTGCTCCTCCTACCAAGTGTCTCC----CCAATGC-CAGAGCAGGAAGAGTCTTCACTCCTCCCCATGCCCCACCTCCCATTTGTTACTAAGAGGAGAGGAGAAAGTAGCAAGGAGGGTATGGGGAATGTTTTG--GGGGAATGGGTGTTG-----GT---GG--------GATCAACAACAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30128841 172 + 173848474 TCATTCTGAGCCTGCTCCTCCTACCAAGTGTCTCC----CCAATGC-CAGAGCAGGAAGAGTCTTCACTCCTCCCCATGCCCCACCTCCCATTTGTTACTAAGAGGAGAGGAGAAAGTAGCAAGGAGGGTATGGGGAATGTTTTG--GGGGAATGGGTGTTG-----GT---GG--------GATCAACAACAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928240 172 +   6154872 TCATTCTGAGCCTGCTCCTCCTACCAAGTGTCTCC----CCAGTGC-CAGAGCAGGAAGAGTCTTCACTCCTCCCCATGCCCCACCTCCCATTTGTTACTAAGAGGAGAGGAGAAAGTAGCAAGGAGGGTATGGGGAATGTTTTG--GGGGAATGGGTGTTG-----GT---GG--------GATCAACAACAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645076 172 + 122973662 TCATTCTGAGCCTTCTCCTCCTACCAAGTGTCTCC----CCAATGC-CAGAGCAGGAAGAGTCTCCACTCCTCCCCATGCCCCACCTCCCATTTGTTACTAAGAGGAGAGGAGAAAGTAGCAAGGAGGGTATGGGGAATGTTTTG--GGGGAATGGGTGTTG-----GT---GG--------GATCAACAATAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126628 172 + 172585720 TCATCTTGAGCCTTCTCCCCCTACCAAGTGTCTCC----CCAATGC-TGGAGCAGGAAGAGTCTTCACTCCTCCCCATGCCCCACCTCTCATTTGTTACTAAGAGGAGAGGAGAAAGTAGCAAGGAGGGTATGGGGAATGTTTTG--GGGGAATGGGTGTTG-----GT---GG--------GATCAACAACAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791309 167 - 170955103 TCATCTTGAGCCTTCTCCCCCTACCAAGTGTCTCC----CCAATGC-TGGAGCAGGAAGAGTCTTCACTCCTCCCCATGCCCCACCTCTCATTTGTTACT-----GAGAGGAGAAAGTAGCAAGGAGGGTATGGGGAATGTTTTG--GGGGAATGGGTGTTG-----GT---GG--------GATCAACAACAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837236 172 -   2996164 TCATCTTGAGCCTTCTCCCCCTACCAAGTGTCTCC----CCAATGC-TGGAGCAGGAAGAGTCTTCACTCCTCTCCATGCCCCACCTCTCATTTGTTACTAAGAGGAGAGGAGAAAGTAGCAAGGAGGGTATGGGGAATGTTTTG--GGGGAATGGGTGTTG-----GT---GG--------GATCAACAACAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586690 172 +    766320 TCATTCTGAGCCTTCTCCCCCTACCAAGTGTCTCC----CCAGTGC-CAGAGCAGGAAGAGTCTTCACTCCTCCCCATGCCCCACCTCTCATTTGTTACTAAGAGGAGAGGAGAAAGTGGCAAGGAGGGTATGGGGAATGTTTTT--GGGGGATGGGTGTTG-----GT---GG--------GATCAACAACAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29043910 172 -  71996105 TCATTCTGAGCCTTCTCCCTCTACCAAGTGTCTCC----CCAATGC-CGGAGCAGGAAGAGTCTTCACTCCTCCCCATGCCCCATCTCTCATTTGTTACTAAGAGGAGAGGAGAAAGTAGCAAGGAGGGTATGGGGAATGTTTTT--GGGGGATGGGTGTTG-----GT---GG--------GATCAACAACAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     239477 172 +    290775 TCATTCTGAGCCTTCTCCCCCTACCAAGTGTCTCC----CCAATGC-CAGAGCAGGAAGAGTCTTCACTCCTCCCCATGCCCCACCTCTCATTTGTTACTAAGAGGAGAGGAGAAAGTAGCAAGGAGGGTATGGGGAATGTTTTT--GGGGGATGGGTGTTG-----GT---GG--------GATCAACAACAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680796 172 -   3067355 TCATTCTGAGCCTTCTCCCCCTACCAAGTGTCTCC----CCAATGC-CAGAGCAGGAAGAGTCTTCACTCCTCCCCATGCCCCACCTCTCATTTGTTACTAAGAGGAGAGGAGAAAGTAGCAAGGAGGGTATGGGGAATGTTTTT--GGGGGATGGGTGTTG-----GT---GG--------GATCAACAACAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      58652 173 +    132061 TCAGTCTGAACCTTCTCTCCCTACAAAGTGTTTCC----CCAGTGC-CAAAGCAGGA--AGTCTTTATTCCTCCCGGCGCACCACCTCCTATTTGTTACTAAGAGGAGAGGAGAAAGTAGCAAGGAGGGTATGGGGAATGTTTCT--GGGGGATGGGTATTG-----GCGGTGA--------GATCATCAATGGA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            12657 168 -    110772 TCAGTCTGAACCTTCTCTCCCTACCAAGTGTCTCC----CCAGTGC-CAAAGCAGAAAGAGTCCTCACTCCTCCCCTCACACCATCTCCCATTTGTTACTAAGAGGAGAGGAGAAAGTAGCAAGGAGGGTTTGGGGAATGTTTCT--GGG----GGGTATTG-----GC---GA--------GATCAACAACGGA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     277529 174 -   1771730 TCAGTCTGAACCTTCTCTCCCTACCAAGTGTCTCC----CCAGTGC-CAAAGCAGGAAGAGTCTTCACTCCTCCCCGCCCACCACCTCCCATTTGTTACTAAGAGCAGAGGAGAAAGTAGCAAGGAGGGTATGGGGAATGTTTCTTGGGGGGGTGGGTATTG-----GT---GA--------GATCAACAACGGA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           158663 145 +  18854210 CCGCTCTGAGCTT--CTCTCCTACCAA----------------CGC-CAAAACAGAGAGGATCTTAATTCCTCCCCCATCCTCACTTCCCATTTGTTACTAAGAGT----TTTAAAGCAGCAAGGAGGGTTTAGGGGAAA-------GGGGTACAGGAATTG-----GT---GA--------GACCTAGAA----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57970627 157 -  94987271 GCAGTCAGAGTCTCCTTGTGCT-----GTGTCCTT----CCCAAAC-CAAGGCA---AGAGTTCTTGCATTTCCA----------CTTCCTTCTGCTGATAAGAG-----AATATAGCAGCAAGGAGGGTTTGAGTCATGGAAAG--GACAAAAGAGCAACA-----AT---GGCCCTGCCCTATACACAACAGG
i mm10.chr17               C 0 I 53
s canFam3.chr35            26263283  94 +  26524999 -TATTCTGAGCTATGCCCTTGTATTG------------------------------------------TCCTCCCC-TGTCCCAGTCC-----------------AAGGGCATAGAGTCGCGGGGAGGG-ATGGGGA----TGCA--AGGGTATG-----TG-----GT---GG--------G------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            84239 138 +    102524 -CCTTCTGAGCCTTGTGTCCC---CAAGTGCCCCCAGAGCCAAAGCGCAGGGCAGCCTGCTCCTCCCGCCCTCCCCAAGCCCTCCCTAC-----------------GGAAGAGGAAGC-----GAAGGGTTTGGGGGG------G--CGGGGACGGGTGCGGCAGCCGC---GG--------G------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               180087 508 + 123392446 I
e proCoq1.NW_012152574v1     653032 132 +    730504 I
e aotNan1.NW_018509740v1     348262 944 -    457564 I

a score=322647.000000
s hg38.chr6_GL000254v2_alt   932351 30 +   4827813 GTCCTTTCTCTCACCTTGAATTCAT-------------------------------------------------CCCAG
s panTro5.chr6             29895141 30 + 175400573 GTCCTTTCTCTCACCTTGAATTCAT-------------------------------------------------CCCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129013 30 + 173848474 GTCCTTTCTCTCACCTTGAATTCAT-------------------------------------------------CCCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928412 30 +   6154872 GTCCTTTCTCTCACCTTGAATTCAT-------------------------------------------------CCCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645248 30 + 122973662 GTCCTTTCTCTCACCTTGAATTCAT-------------------------------------------------CCCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126800 30 + 172585720 GTCCTTTCTGTCACCTTGAATTCAG-------------------------------------------------CCCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791476 30 - 170955103 GTCCTTTCTGTCACCTTGAATTCAG-------------------------------------------------CCCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837408 30 -   2996164 GTCCTTTCTGTCACCTTGAATTCAG-------------------------------------------------CCCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586862 30 +    766320 GTCCTTTCTGTCACCTTGAATTCAG-------------------------------------------------CCCAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29044082 30 -  71996105 GTCCTTTCTGTCACCTTGAATTCAG-------------------------------------------------CCCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     239649 30 +    290775 GTCCTTTCTGTCACCTTGAATTCAG-------------------------------------------------CCCAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680968 30 -   3067355 GTCCTTTCTGTCACCTTGAATTCAT-------------------------------------------------CCCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      58825 30 +    132061 GTCCTTTCTCTCTCCTTGAATTCAT-------------------------------------------------CCCAG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            12825 30 -    110772 GCCTTTTCTCTCTCTTTGAATTCAT-------------------------------------------------CCCAG
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     277703 30 -   1771730 GTCCTTTCTCTCTCCTTGAATTCAT-------------------------------------------------CCCAG
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012152574v1     653164 30 +    730504 GTCTTTTCTCTCCCCTTGAATTCTT-------------------------------------------------CCCAG
i proCoq1.NW_012152574v1   I 132 C 0
s mm10.chr17               57970837 79 -  94987271 gtttgttttttgtttttgtttttgttttttgttttttgttttttgttttttgttttttgttttttgttttttCACCCAG
i mm10.chr17               I 53 C 0
s canFam3.chr35            26263377 29 +  26524999 GTCTCCTCTCTCCCCTTGAATTCAT-------------------------------------------------CCT-G
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            84377 30 +    102524 GTCCTTTCTCTCCCCTTGGAAATAC-------------------------------------------------CCCGG
i dasNov3.JH582591         C 0 I 166
e micMur3.chr6               180087 508 + 123392446 I
e otoGar3.GL873550           158808  0 +  18854210 C
e aotNan1.NW_018509740v1     348262 944 -    457564 I

a score=46869.000000
s hg38.chr6_GL000254v2_alt   932381 4 +   4827813 ATGC
s panTro5.chr6             29895171 4 + 175400573 ATGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129043 4 + 173848474 ATGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928442 4 +   6154872 ATGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645278 4 + 122973662 ATGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126830 4 + 172585720 ATGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791506 4 - 170955103 ATGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837438 4 -   2996164 ATGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586892 4 +    766320 ATGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29044112 4 -  71996105 ATGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     239679 4 +    290775 ATGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2680998 4 -   3067355 ATGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      58855 4 +    132061 ATGC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            12855 4 -    110772 ATGC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     277733 4 -   1771730 ATGC
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012152574v1     653194 4 +    730504 ATGC
i proCoq1.NW_012152574v1   C 0 I 570
s mm10.chr17               57970916 4 -  94987271 AATT
i mm10.chr17               C 0 I 1
s canFam3.chr35            26263406 4 +  26524999 GTGC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               180087 508 + 123392446 I
e dasNov3.JH582591            84407 166 +    102524 I
e otoGar3.GL873550           158808 0 +  18854210 C
e aotNan1.NW_018509740v1     348262 944 -    457564 I

a score=983113.000000
s hg38.chr6_GL000254v2_alt   932385 102 +   4827813 CTGCTTGTTTACTTCTTCCACACAAAAAAAGGCCTTCAGCCCTcatggct----gagcagaaagaatctgaatgttagagtcaggcagcctgggtttgaattccat
s panTro5.chr6             29895175 102 + 175400573 CTGCTTGTTTACTTCTTCCACACAAAAAAAGGCCTTCAGCCCTcatggct----gagcagaaagaatctgaatgttagagtcaggcagcctgggtttgaattccat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129047 102 + 173848474 CTGCTTGTTTACTTCTTCCACACAAAAAAAGGCCTTCAGCCCTcatggct----gagcagaaagaatctgaatgttagagtcaggcagcctgggtttgaattccat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928446 102 +   6154872 CTGCTTGTTTACTTCTTCCACACGAAAAAAGGCCTTCAGCCCTcatggct----gagcagaaagaatctgaatgttagagtcaggcagcctgggtttcaattccat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645282  99 + 122973662 CTGCTTGTTTA---CTTCCACACAGAAAAAGGCCTTCAGCCCACACGGCT----Gagcagaaagaatctgaatgttagagtcaggcagcctgggtttgaattccat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126834 101 + 172585720 CTGCTTGTCTACTTCTGCCACAT-GAAAAAGGCCTTCAGCCCAcatggct----gagcagaaagaatctgaatgttagagtcagccagcctgggtttgaattccat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791510 101 - 170955103 CTGCTTGTCTACTTTTCCCACAT-GAAAAAGGCCTTCAGCCCAcatggct----gagcagaaagaatctgaatgttagagtcaggcagcctgggtttgaattccat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837442 101 -   2996164 CTGCTTGTCTACTTATCCCACAT-GAAAAAGGCCTTCAGCCCAcatggct----gagcagaaagaatctgaatgttagagtcaggcagcctgggtttgaattccat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586896 101 +    766320 CTGCTTGTCTACTTCTCCCACGT-GAAAAAGGCCTTCAGCCCAcatggct----gagcagaaagaatctgaatgttagagtcaggcagcctgggtttgaattccat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29044116 101 -  71996105 CTGCTTGTCTACTTCTCCCACGT-GAAAAAGGCCTTCAGCCCACAGGGCT----Gagcagaaagaatctgaatgttagagtcagacagcctgggtttgaattccat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     239683 101 +    290775 CTGCTTGTTTACTTCTCCCACGT-GAAAAAGGCCTTCAGCCCAcatggct----gagcagaaagaatctgaatgttagagtcaggcagcctgggtttgaattccat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2681002 101 -   3067355 CTGCTTGTCTACTTCTCCCACAT-GAAAAAGGCCTTTGGCCCAcatggct----gagcagaaagaatctgaatgttagagtcaggcagcctgggtttgaattccat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      58859 101 +    132061 TTGCTTGTCTATTTCTTCCACAT-GAAAAAGGCTTTCAGCCCACCTGGCT----Gagcagaaagaatctgaatgttagagttaggtagcctgggtttgaattccat
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            12859 101 -    110772 TTGCTTGTCTATTTCTTCCACAT-GAAAAAGGCCTGCAGCCCAcatggct----gagcagaaagaatctgaatgttagagttaggctgcctgggtttgaattccat
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     277737 101 -   1771730 TTGCTTGTCTATTTCTTCCACAT-GAAAAAGGCCTTCAGCCCAcgtggca----gagcagaaacaatatgaatgttagagttaggcagcttgggtttgaactccat
i cebCap1.NW_016107755v1   C 0 I 32
s otoGar3.GL873550           158808  89 +  18854210 ------------TTCCTCCACAT-GAAAAAGGCCTTCAGCCCAcatggct----gagtagaaaaaacctgaatgttagtgtcagacagtctgggtttgaatcccag
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57970921  94 -  94987271 CTGGTTACCTACTCCAT-GGCAA-AGAAAAGGCTCTCCAACATCATGGCTACTAGAGCAGGAACA----------CGGAGCTAGGCAGCCTAGGATCCAACTCTAC
i mm10.chr17               I 1 C 0
s canFam3.chr35            26263410  70 +  26524999 -----------------CCACTG------TGGTTGTCAGTTCCCACAGCT----GAGCACAAGGGCCTGTGGTGTCTGTG-------GCCT-GGCTTGAATCCAG-
i canFam3.chr35            C 0 C 0
e micMur3.chr6               180087 508 + 123392446 I
e dasNov3.JH582591            84407 166 +    102524 I
e proCoq1.NW_012152574v1     653198 570 +    730504 I
e aotNan1.NW_018509740v1     348262 944 -    457564 I

a score=95573.000000
s hg38.chr6_GL000254v2_alt   932487 16 +   4827813 ctcaggtactgaactc
s panTro5.chr6             29895277 16 + 175400573 ctcaggtactgaactc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129149 16 + 173848474 ctcaggtactgaactc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928548 16 +   6154872 ctcaggtactgaacta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645381 16 + 122973662 ctcaggtactgaacta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126935 16 + 172585720 ctcaggtactgaaata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791611 16 - 170955103 ctcaggtactgaacta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837543 16 -   2996164 ctcaggtactgaacta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     586997 16 +    766320 ctcaggtactgaacta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29044217 16 -  71996105 ctcaggtactgaacta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     239784 16 +    290775 ctcaggtactgaacta
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2681103 16 -   3067355 ctcaggtactgaacta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      58960 14 +    132061 ctcgggtaccacac--
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            12960 14 -    110772 cccggataccacac--
i saiBol1.JH378388         C 0 C 0
s otoGar3.GL873550           158897 16 +  18854210 gtcaggcactgaactc
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57971015 13 -  94987271 TGTAGACACCAAC---
i mm10.chr17               C 0 C 0
s canFam3.chr35            26263480 11 +  26524999 CTGGGGCAGGG-----
i canFam3.chr35            C 0 C 0
e micMur3.chr6               180087 508 + 123392446 I
e dasNov3.JH582591            84407 166 +    102524 I
e proCoq1.NW_012152574v1     653198 570 +    730504 I
e aotNan1.NW_018509740v1     348262 944 -    457564 I
e cebCap1.NW_016107755v1     277838 32 -   1771730 I

a score=1283125.000000
s hg38.chr6_GL000254v2_alt   932503 134 +   4827813 tat-agcaaaattcttagattctccaagcttcagttgccttgtctgtcaaatagagaaaacatccttcgtcctaaa-ttgtagggaggattaaag-----tcatgcaaagtgcctactacaaatccagtcacaaagtagct
s panTro5.chr6             29895293 134 + 175400573 tat-agcaaaattcttagattctccgagcttcagttgccttgtctgtcaaatagagaaaacatcctccctcctaaa-ttgtagggaggattaaag-----tcatgcaaagtgcctactacaaatccagtcacaaagtagct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129165 134 + 173848474 tat-agcaaaattcttagattctccgagcttcagttgccttgtctgtcaaatagagaaaacatcctccctcctaaa-ttgtagggaggattaaag-----tcatgcaaagtgcctactacaaatccagtcacaaagtagct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928564 135 +   6154872 tat-agcaaaattcttagattctccaagcctcagttgccttgtctgtcaaatagagaaaacatcctccctcctaaacttgtagggaggattaaag-----tcatgcaaagtgtctactacaaatccagtcacaaagtagct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645397 134 + 122973662 tac-agcaaaattctttgattctccaagcctcagttgccttgtctgtcaaatagagaaaacatcctccctcctaaa-ttgtagggaggattaaag-----tcatgcaaagtgcctactacaaatccagtcacaaagtagct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30126951 134 + 172585720 tat-agcaaaattcttagattctccaagcctcaattgccttgtctgttaaatagagaaaacatcctccctcctaca-ttgtagggaggataaaag-----tcatgcaaagtgcctactacaaatccagtcacagagtagct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791627 134 - 170955103 tat-agcaaaattcttagattctccaagcctcaattgccttgtctgtcaaatagagaaaacatcctccctcctaca-ttgtagggaggataaaag-----tcatgcaaagtgcctactacaaatccagtcacagagtagct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837559 134 -   2996164 tat-agcaaaattcttagattctccaagcctcaattgccttgtctgtcaaatagagaaaacatcctccctcctaca-ttgtagggaggataaaag-----tcatgcaaagtgcctactacaaatccagtcacagagtagct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     587013 134 +    766320 tat-agcaaaattcttagattctccaagcctcaattgccttgtctgtcaaatagagaagacatcctccctcctaca-ttgtagggaggataaaag-----tcatgcaacgtgcctactacaaatccagtcacagagtagct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29044233 134 -  71996105 tat-agcaaaattcttagattctccaagcctcaattgccttgtctgtcaaatagagaaaacatcctccctcctaca-ttgtagggaggataaaag-----tcatgcaaagtgcctactacaaatccagtcacagagtagct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     239800 134 +    290775 tat-agcaaaattcttagattctccaagcctcaattgccttgtctgtcaaatagagaagacatcctccctcctaca-ttgtagggaggataaaag-----tcatgcaacgtgcctactacaaatccagtcacagagtagct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2681119 134 -   3067355 tag-agcaaaattcttagattctccaagcctcaattgccttgtctgtcaaatagagaaaacatcctccctcctaca-ttgtagggaggataaaag-----tcatgcaaagtgcctactacaaatccagtcacagagtagct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      58974 134 +    132061 tat-ggcaaaattcttagattctccaagcctcagttgccttgtctgccaaatagagaacacatcctccctcctaaa-ttgtaaaaaggattaaag-----tcatgtaaagtgcatactacaaatccagtcacaaagtagct
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            12974 134 -    110772 tat-ggcaaaattcttagattctccaagcctcagttgctttgtctgccaaacagagaacacatcctccctcctaaa-ttgtaaaaaggattaaag-----tcatgtaaagtgcctactacaaatccagtcacaaagtagct
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     277870 134 -   1771730 tat-ggcaaaattcttagattctccaagcctcagttgctttgtctgccaaatagagaacacatcctctctcctaaa-ttgtaaaaaggattaaag-----tcatgtcaagtgcctgctacaaatccagtcacaaagtagct
i cebCap1.NW_016107755v1   I 32 C 0
s otoGar3.GL873550           158913 111 +  18854210 -tg-aacaaaattctcaggtcctctaagcttcagttgcc-----------------------tcctccctcttaaa-tttcaggaagaattaaaggagattattataaagtacctagtatagatccagtcacaaca----t
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57971028 111 -  94987271 TATGAGAAAAATTCTTAGGTTCTCCAAGTCTC---------------CAAGTAGGGATAGAAT-TTCCCTCTTAAA-CTGTGGGAATCTTACAGG---------GAGAAGTGTGTAGCATACATGCAATCATAAAG----T
i mm10.chr17               C 0 C 0
s canFam3.chr35            26263491  98 +  26524999 ------------CCTGGCATCCTCCCAGAC---------------ATCCCATGGAGGGAACAGCCTCCCTCCCATA-CCGGAGGGGATGTTGTTC-----TGGGGTGACTCCCTGGGTGCAAGT----------AGTAGGT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               180087 508 + 123392446 I
e dasNov3.JH582591            84407 166 +    102524 I
e proCoq1.NW_012152574v1     653198 570 +    730504 I
e aotNan1.NW_018509740v1     348262 944 -    457564 I

a score=181498.000000
s hg38.chr6_GL000254v2_alt   932637 19 +   4827813 a-------gctactcactaaatgttc
s panTro5.chr6             29895427 19 + 175400573 a-------gctgctcactaaatgttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129299 19 + 173848474 a-------gctgctcactaaatgttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928699 19 +   6154872 a-------gctactcactaaatgttc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645531 19 + 122973662 a-------gctactcactaaatgttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30127085 19 + 172585720 a-------gctgctcactaaatgctc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791761 19 - 170955103 a-------gctgctcactaaatgctc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837693 19 -   2996164 a-------gctgctcactaaatgctc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     587147 19 +    766320 a-------gctgctcactaaatgttc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29044367 19 -  71996105 a-------gctgctcactaaatgctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     239934 19 +    290775 a-------gctgctcactaaacattc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2681253 19 -   3067355 a-------gctactcactaaatgttc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      59108 19 +    132061 a-------gctactcactaagtgttc
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            13108 19 -    110772 a-------gctactcactaagtgCTC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     278004 19 -   1771730 a-------gctactcactaagtgttc
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           159024 19 +  18854210 a-------gctgctcactaaatATTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57971139 19 -  94987271 A-------GCTGCTCACTAAATGTGT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26263589 12 +  26524999 AGGGCAAGGCTG--------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            84573 17 +    102524 -------GGCCACTCA-GGAGCGTT-
i dasNov3.JH582591         I 166 C 0
e micMur3.chr6               180087 508 + 123392446 I
e proCoq1.NW_012152574v1     653198 570 +    730504 I
e aotNan1.NW_018509740v1     348262 944 -    457564 I

a score=325781.000000
s hg38.chr6_GL000254v2_alt   932656 23 +   4827813 agctcCTCC-CTCCTCATTCAGAT
s panTro5.chr6             29895446 23 + 175400573 agctcCTCC-CTCCTCATTCAGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129318 23 + 173848474 agctcCTCC-CTCCTCATTCAGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928718 23 +   6154872 agctcCTCC-TTCCTCATTCAGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645550 23 + 122973662 agctcCTCC-TTCCTCATTCAGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30127104 23 + 172585720 agctcCTCC-TTCCTCATTCAGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791780 23 - 170955103 agctcCTCC-TTCCTCATTCAGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837712 23 -   2996164 agctcCTCC-TTCCTCATTCAGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     587166 23 +    766320 agctTCTCC-TTCCTCATTCAGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29044386 23 -  71996105 agctcCTCC-TTCCTCATTCAGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     239953 23 +    290775 agctcCTCC-TTCCTCATTCAGAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2681272 23 -   3067355 agctcCTCC-TTCCTCATTCAGAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      59127 23 +    132061 agctcCTCC-TTCCTCATTCAGAT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            13127 23 -    110772 AGATCCTCC-TTCCTCATTCAGAT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     278023 23 -   1771730 agctcCTCC-TTCCTCATTCAGAT
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               180595 23 + 123392446 agctctTCC-TTCCTCATTCAGAT
i micMur3.chr6             I 508 C 0
s otoGar3.GL873550           159043 23 +  18854210 AGTCCTTCC-TTCCTCATTCAGAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57971158 16 -  94987271 AGTTTCTCC--------TCCAGAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26263601 24 +  26524999 AGCTCCTCCCTTCCTCCTCCAGGT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            84590 22 +    102524 AGCTGCTCC-TCCCTCACTCAGC-
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     653198 570 +    730504 I
e aotNan1.NW_018509740v1     348262 944 -    457564 I

a score=94694.000000
s hg38.chr6_GL000254v2_alt   932679 13 +   4827813 GGGAAGTGGCTTT
s panTro5.chr6             29895469 13 + 175400573 GGGAAGTGGCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129341 13 + 173848474 GGGAAGTGGCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928741 13 +   6154872 GGGAAGTGGCTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645573 13 + 122973662 GGGAAGTGGCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30127127  7 + 172585720 GGGAAGT------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791803  7 - 170955103 GGGAAGT------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837735  7 -   2996164 GGGAAGT------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     587189  7 +    766320 GGGAAGT------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29044409  7 -  71996105 GGGAAGT------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     239976  7 +    290775 GGGAAGT------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2681295  7 -   3067355 GGGAAGT------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      59150 13 +    132061 GGGAAGTGGCTTT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            13150 13 -    110772 GGGAAGTGGCTTT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     278046 13 -   1771730 GGGAAGTGGCTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     349206 13 -    457564 GGGAAGTGGCTTT
i aotNan1.NW_018509740v1   I 944 C 0
s micMur3.chr6               180618 13 + 123392446 GGGAAGTGGCTTT
i micMur3.chr6             C 0 I 574
s otoGar3.GL873550           159066 11 +  18854210 GGGAA--GGCTTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57971174 13 -  94987271 GGGATATGGGTTT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26263625 13 +  26524999 AGGAAGTGGCTTC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            84612 13 +    102524 GGGCTGGGGCCCT
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     653198 570 +    730504 I

a score=465942.000000
s hg38.chr6_GL000254v2_alt   932692 61 +   4827813 AGA---------------------------------TAAACAAAGTGGCAACGCAGTGGGCTG--GAGCAGCTCTGTGAACT-GAGAATCCAAGAAA
s panTro5.chr6             29895482 61 + 175400573 AGA---------------------------------TAAACAAAGTGGCAACGCAGTGGGCTG--GAGCAGCTCTGTGAACT-GAGAATCCAAGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129354 61 + 173848474 AGA---------------------------------TAAACAAAGTGGCAACGCAGTGGGCTG--GAGCAGCTCTGTGAACT-GAGAATCCAAGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928754 61 +   6154872 AGA---------------------------------TCTACAAAGTGGCAAAGCAGTGGGCTG--GAGCAGCTCTGTGAACT-GAGAATCCAAGAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645586 61 + 122973662 AGA---------------------------------TCTACAAAGCGGCAATGCGGTGGGCTG--GAGCAGCACTGTGAACT-GAGAATCCAAGAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30127134 48 + 172585720 ----------------------------------------------GGCAACGCAGTGGGCTG--GAGCAGCACTATGAACT-GAGAATCCAAGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791810 48 - 170955103 ----------------------------------------------GGCAACGCAGTGGGCTG--GAGCAGCACTATGAACT-GAGAATCCAAGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837742 48 -   2996164 ----------------------------------------------GGCAACGCAGTGGGCTG--GAGCAGCACTATGAACT-GAGAATCCAAGAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     587196 48 +    766320 ----------------------------------------------GGCAACGCAGTGGGCTG--GAGCAGCACTATGAACT-GAGAATCCAAGAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29044416 48 -  71996105 ----------------------------------------------GGCAACGCAGTGGGCTG--GAGCAGCACTATGAACT-GAGAATCCAAGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     239983 48 +    290775 ----------------------------------------------GGCAACGCAGTGGGCTG--GAGCAGCACTATGAACT-GAGAATCCAAGAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2681302 48 -   3067355 ----------------------------------------------GGCAACACAGTGGGCTG--GAGCAGCACTATGAACT-GAGAATCCAAGAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      59163 61 +    132061 AGA---------------------------------TCAACAAAGTGGCAACCCAGTGGGCTT--GAGCAGCACTGTGAACT-TAGAATCCAAGAAA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            13163 62 -    110772 AGA---------------------------------TCAACAAAGTAGCAACCCAGTGGACTG--GAGCAGCACTGTGAACTAAAGCATCCAAGAAA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     278059 61 -   1771730 AGA---------------------------------TCCACAAAGTAGCACCCCAGTGGGCTG--GAGCAGCACTGTGAACT-GAGAATCCAACAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     349219 61 -    457564 AGA---------------------------------TCAACAAAGTGGCAACCCAGTGGGCTG--GAGCAGTACTGTGAACT-GAGAATCCAAGAAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           159077 60 +  18854210 AGA---------------------------------TTTGTAAAATGGCAGCCCCACAGGGTG--GAGGGGGAATGTGAACT-AAGAA-CCAAGGAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57971187 48 -  94987271 ATA---------------------------------TTTACAAAATGACAATCTTCTTGACCA-----------TGTGAACT-GAG----CAAGAAA
i mm10.chr17               C 0 I 741
s canFam3.chr35            26263638 89 +  26524999 AGATTCACAAAGTGaaaaaaaattaaaataaaaatattCACAAAGTGACAGCCCC-TGGGCAG--GGATGGG--TGTGAGTG-GAGAA--CAAGGAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            84625 28 +    102524 ---------------------------------------------------------GGGCTTACAAGCAG------------GTGGAAGCAAGAAA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               180631 574 + 123392446 I
e proCoq1.NW_012152574v1     653198 570 +    730504 I

a score=492543.000000
s hg38.chr6_GL000254v2_alt   932753 54 +   4827813 AGGGGCGAAGAGCAG---CTGGGATGTATTGGATGCTTGTGCTGGCTTGGAGCATTG----
s panTro5.chr6             29895543 54 + 175400573 AGGGGCGAAGAGCAG---CTGGGATGTATTGGATGCTTGTGCTGGCTTGGAGCATTG----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129415 54 + 173848474 AGGGGCGAAGAGCAG---CTGGGATGTATTGGATGCTTGTGCTGGCTTGGAGCATTG----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928815 54 +   6154872 AGGGGCGAAGAGCAG---CTGGGATGTATTAGATGCTTGTGCTGGCTTGGAGCATTG----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645647 54 + 122973662 TCCACCACAGAGCAG---CTGGGAGGTAGTAGATCCTTGTGCTGGCTTGGGGCATTG----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30127182 54 + 172585720 AGGGGCGAAGAGCAG---CTGGGAGGTAGTAGATCCTTGTGCTGGTTTGGGGCATTG----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791858 54 - 170955103 AGGGGCGAAGAGCAG---CTGGGAGGTAGTAGATCCTTGTGCTGGTTTGGGGCATTG----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837790 54 -   2996164 AGGGGCGAAGAGCAG---CTGGGAGGTAGTAGATCCTTGTGCTGGTTTGGGGCATTG----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     587244 54 +    766320 AGGGGCGAAGAGCAG---CTGGGAGGTAGTAGATCCTTGTGCTGGTTTGGGGCATTG----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29044464 54 -  71996105 AGGGGCGAAGAGCAG---CTGGGAGGTAGTAGATCCTTGTGCTGGTTTGGGGCATTG----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     240031 54 +    290775 AAGGGCGAAGAGCAG---CCGGGAGGTAGTAGATCCTTGTGCTGGTTTGGGGCATTG----
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2681350 54 -   3067355 ACGGGCGAAGAGCAG---CTGGGAGGTAGTAGATCCTTGTGCTGGTTTGGGGCATTG----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      59224 54 +    132061 ACTTGCAAAGAGCAG---CTGGGAGGTAGTAGATCCTTGTGTTGCTTTTGGAAATTG----
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            13225 50 -    110772 A----GGAAGAGCAG---CTGGGAGGTAGTAGATCCTTGTGCTGCTTTTGGAAATTG----
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     278120 54 -   1771730 AGGTGTGAAGAGCAG---CTGGGAGGTAGTAGATCCTTGTGTTGGTTTGGGAAATTG----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     349280 54 -    457564 AGATGTGAAGAGCAG---CTGGGAGGTAGTAGATTCTTGTGTTGGTTTGGGAAATTG----
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           159137 31 +  18854210 AGGAGTGAAGAGCAG---TGGG-----------------------TCTGGGGCTTTG----
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26263727 39 +  26524999 ---ACCCAAGGCCAGGACCCGGGAGGT---------------TGGTGTGGGGCACTG----
i canFam3.chr35            C 0 I 3
s dasNov3.JH582591            84653 57 +    102524 AGAAGCCAACAGCAG---GGGAGAGGAAGTAAAT-CTTAGGCGGGTCAGGGCTGAGGTCTC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               180631 574 + 123392446 I
e mm10.chr17               57971235 741 -  94987271 I
e proCoq1.NW_012152574v1     653198 570 +    730504 I

a score=600084.000000
s hg38.chr6_GL000254v2_alt   932807 58 +   4827813 CT---CACATTCTTTATTCG-CTA-TTGTATCTAGACTATAGCTAGAGAAAGAGCC---GCAACCA
s panTro5.chr6             29895597 58 + 175400573 CT---CACATTCTTTATTCG-CTA-TTGTATCTAGACTATAGCTAGAGAAAGAGCC---GCAACCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129469 58 + 173848474 CT---CACATTCTTTATTCG-CTA-TTGTATCTAGACTATAGCTAGAGAAAGAGCC---GCAACCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928869 56 +   6154872 CT-----CATTCTTTATTCT-CTA-TTGTATCTAGACTATAGCTAGAGAAAGAGCC---GCAACCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645701 58 + 122973662 CT---CACATTCTTCATTCG-CTA-TTGTATCTAGACTATAGCTAGAGAAAGAGCC---GCAACCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30127236 58 + 172585720 CT---CACATTCTTTATTCG-CTA-TTGTATCTAGACTATAGCTAGAGAAAGAGCC---ACAACCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791912 58 - 170955103 CT---CACATTCTTTATTCG-CTA-TTGTATCTAGACTATAGCTAGAGAAAGAGCC---ACAACCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837844 58 -   2996164 CT---CACATTCTTTATTCG-CTA-TTGTATCTAGACTATAGCTAGAGAAAGAGCC---ACAACCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     587298 58 +    766320 CT---CACATTCTTTATTCG-CTA-TTGTATCTAGACTATAGCTAGAGAAAGAGCC---GCAGCCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29044518 58 -  71996105 CT---CACATTCTTTATTCG-CTA-TTGTATCTAGACTATAGCTAGAGAAAGAGCC---GCAACCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     240085 58 +    290775 CT---CACATTCTTTATTAG-CTA-TTGTATCTAGACTATAGCTAGAGAAAGAGCC---GCAGCCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2681404 58 -   3067355 CT---CACATTCTTTATTCG-CTA-TTGTATCTAGACTATAGCTAGAGAAAGAGCC---GCAACCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      59278 59 +    132061 TT---CACATTCTTTATTCACCTA-TTGAATCTAGACTCTAGCTAGAGAAAGAGCG---GCAACCC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            13275 60 -    110772 CT---CACATTCTTTATTCCCCTATTTGAATCTAGACTCTAGCTAGAGGAATAGCT---GCAACCC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     278174 59 -   1771730 CT---CACATTCTTTATTCCCCTA-TTGAATCTAGACTCTAGCTGGAGAAAGAGCT---GCAACCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     349334 59 -    457564 CT---CACATTCTTTATTCCCCTA-TTGAATCTAGGCTGTAGCTAGAGAAAGAGCT---GCAACCT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           159168 53 +  18854210 TTCTTCGTATTTTTTATTCA-CTA-ATTAATCCAATCTATAGCCAGAGAAAGAGC-----------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57971976 58 -  94987271 CT---CATGCTCTTTATTTCATTA-TTTAATC-AGACAATATTCACAGAAAGAGAC---TGGACTC
i mm10.chr17               I 741 C 0
s canFam3.chr35            26263769 46 +  26524999 TT---CAAGTCCTCAACTCAAATA-CTGAGTCCACACTGTAGCAGCAGGG----------------
i canFam3.chr35            I 3 C 0
s dasNov3.JH582591            84710 61 +    102524 CC---CGCATTCTCCGTCCC-CCA-TTCAATCCTCATGACAGCCACAGAATGAGCCTGAGTGACCA
i dasNov3.JH582591         C 0 I 106
e micMur3.chr6               180631 574 + 123392446 I
e proCoq1.NW_012152574v1     653198 570 +    730504 I

a score=1318047.000000
s hg38.chr6_GL000254v2_alt   932865 122 +   4827813 TTGGCTTTAAATCCAGTGCTCTTCC------------------------TACTCTC-CTGAGGTT------------------------------GTTTCCAGGCTGCAGA-------------------GAAATAGC-------CTGCACAAGGGGCCCAGGCGCTGGGTG---TGGGAGGGTCCCCACCGAGAGCCAGAACATG
s panTro5.chr6             29895655 122 + 175400573 TTGGCTTTAAATCCAGTGCTCTTCC------------------------TACTCTC-CTAAGGTT------------------------------GTTTCCAGGCTGCAGA-------------------GAAATAGC-------CTGCACAAGGGGCCCAGGCGCTGGGTG---TGGGAGGGTCCCCACCGAGAGCCAGAACATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129527 122 + 173848474 TTGGCTTTAAATCCAGTGCTCTTCC------------------------TACTCTC-CTAAGGTT------------------------------GTTTCCAGGCTGCAGA-------------------GAAATAGC-------CTGCACAAGGGGCCCAGGCGCTGGGTG---TGGGAGGGTCCCCACCGAGAGCCAGAACATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5928925 121 +   6154872 TTGGCTTTAAATCCAGTGCTCTTCC------------------------TACTCTC-CTAAGGTT------------------------------GTTTCCA-GCTGCAGA-------------------GAAATAGC-------CTGCACAAGGGGCCCAGGCGCTGGGTG---CGGGAGGGTCCCCACCGAGAGCCAGAACATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645759 122 + 122973662 TTGGCTTTAAATCCAGTGCTCTTCC------------------------TACTCTC-CTAAGGTT------------------------------GTTTCCGGGCCGCAGA-------------------GAAATAGC-------CTGCACAAGGGGCCCAGGCGCTGGGTG---TGGGAGGGTCCCCACCGAGAGCCAGAGCATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30127294 122 + 172585720 TTGGCTTTCAATCCAGTGCTCTTCC------------------------TACTCTC-CTAAGGTT------------------------------GTTTCTGGGCTGCAGA-------------------GAAATAGC-------CTGCACAAGGGGCCCAGGCGCTGGGTG---TAGGAGGGTCCCCACCGGGAGTCAGAGCATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29791970 122 - 170955103 TTGGCTTTCAATCCAGTGCTCTTCC------------------------TACTCTC-CTAAGGTT------------------------------GTTTCTGGGCTGCAGA-------------------GAAATAGC-------CTGCACAAGGGGCCCAGGCGCTGGGTG---TAGGAGGGTCCCCACCGGGAGTCAGAGCATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2837902 122 -   2996164 TTGGCTTTCAATCCAGTGCTCTTCC------------------------TACTCTC-CTAAGGTT------------------------------GTTTCTGGGCTGCAGA-------------------GAAATAGC-------CTGCACAAGGGGCCCAGGCGCTGGGTG---TAGGAGGGTCCCCACCGGGAGTCAGAGCATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     587356 122 +    766320 TTGGCTTTCAATCCAGTGCTCTTCC------------------------TACTCTC-CTAAGGTT------------------------------GTTTCCGGGCTGCAGA-------------------GAAATAGC-------CTGCACAAGGGGCCCAGGCGCTGGGTG---TAGGAGGGTCCCCACCGGGAGTCAGAGCATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29044576 122 -  71996105 TTGGCTTTCAATCCAGTGCTCTTCC------------------------TACTCTC-CTACGGTT------------------------------GTTTCCGGGCTGCAGA-------------------GAAATAGC-------CTGCACTAGGGGCCCAGGCGCTGGGTG---TAGGAGGGTCCCCACTGGGAGTCAGAGCATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     240143 122 +    290775 TTCGCTTTCAATCCAGTGCTCTTCC------------------------TACTCTC-CTAAGGTT------------------------------GTTTCCGGGCTGCAGA-------------------GAAATAGC-------CTGCACAAGGGGCCCAGGCGCTGGGTG---TAGGAGGGTCCCCACCGGGAGTCAGAGCATG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2681462 125 -   3067355 TTGGCTTTAAATCCAGTGCTCTTCT------------------------GACTCTC-CTAAGGTT------------------------------GTTTCCGGGCTGCAGA-------------------GAAATAGCC----TGCTGCACAAGGGGCCCAGGCACTGGGTG---TAGAAGGGTCCCCACCGGGAGTCAGAGCATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      59337 123 +    132061 TTGGCTTCAAATCCAGTGCTCTTCT------------------------CACACTCTTTAAGGTT------------------------------GCTTTCCCGCTGCAGA-------------------GAAATAGC-------CTGTATGAGGGGCCCAGGTGCTGGGGG---TGGGAGGGTCCCCACCAAAAGCCAGAGCAGG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            13335 123 -    110772 TTGGCTTCAGATCCAGTGCTCTTCT------------------------CACACTCTTTAAGGTT------------------------------GCTTTCGCGCTGCAGA-------------------AAAATAGC-------CTGCACGAGGGTCCCAGGCGCTGGGGG---TGGGAGGTTCCCCACCAAGAGCCAAAGCAGG
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     278233 123 -   1771730 TTGGCTTCAAATCCAGTGCCCTTCT------------------------CACGCTCTTTAAGGTT------------------------------GCTTTTGCGCTGCAGA-------------------GAAATAGC-------CTGCAAGAGGGGCCCAGGCGCTGGGAG---TGGGAGGGTCCCCACCAAGAGCCAGAGCAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     349393 123 -    457564 TTGGCTTCAAATCCAGTGCTCTTCT------------------------CACACTCTTTAAGGTT------------------------------GCTTTGGCGCTGCAGA-------------------GAAATAGC-------CTGCACGAGGGGCCCAGGCGCTGGGGG---TGGGAGGGTCCCCACCAAGAGCCAGAGCAGG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           159221 114 +  18854210 ----CTCTAAATCCAGTGCTCTTCC------------------------CACACTT-CTAAATAT------------------------------GCTCTCCAGCTGCAGA-------------------GAAATGGC-------CCACACAAAAGCCCCAGGTGCTGGGTG---TGGAAGGGTCCTCACCTAGTGCCAAAG----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57972034 115 -  94987271 TTGGTTTCAAATCTAGAGCTCTTCC------------------------TATTCTA-----AGAT------------------------------GCTCCCGGGCCATCAA-------------------AGAATTCT-------CCACACAAAGGTCCAAGGTGCTGGGTGGTATGGAAGGGTCCTCAT--ACTGTTAGAT----
i mm10.chr17               C 0 C 0
s canFam3.chr35            26263815  91 +  26524999 ------------CTAGGGC---------------------------------ACTC-CCGAGGAT------------------------------GCTCCTGGGCTCCTGA-------------------GAAACTGC-------CTATACAAATCA-CAGGGCATTGGGTG---CAGGAG---CCCCATCAAATGCCAG------
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            84877 194 +    102524 TGGGCTCTAAATCCAGTGCTCCTCCAGGGCCTCTGGACTCCTAATCCAGTGCTCCT-CCAGGGCCTCTGGACTCCAAATCCAATGCTCCCCCAGGGCCTCTGGGCTCCGAATCCAGTGCACTAGGGCCCTGAGGCTGCTGCCAGGCCGCACAGCGG--CCACGTTCCGGGTG---GGGAAGGGTCCCCGC--AGTCCCAGAG----
i dasNov3.JH582591         I 106 C 0
e micMur3.chr6               180631 574 + 123392446 I
e proCoq1.NW_012152574v1     653198 570 +    730504 I

a score=1226891.000000
s hg38.chr6_GL000254v2_alt   932987 65 +   4827813 CAGGAACTA-AAATG-TTGCCTTTTTCTATTTTAGGAAAACTTCGAGCAGAGATAGGTGAGTTCCAG
s panTro5.chr6             29895777 65 + 175400573 CAGGAACTA-AAATG-TTGCCTTTTTCTATTTTAGGAAAACTTCGAGCAGAGATAGGTGAGTTCCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129649 65 + 173848474 CAGGAACTA-AAATG-TTGCCTTTTTCTATTTTAGGAAAACTTCGAGCAGAGATAGGTGAGTTCCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929046 65 +   6154872 CAGGAACTA-AAATG-TTGCCTTTTTCTATTTTAGGAAAACTTCGAGCAGAGATAGGTGAGTTCCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645881 65 + 122973662 CAGGAACTA-AAATG-TTGCCTTTTTCTATTTTAGGAAAACTTCGAGCAGAGATAGGTGAGTTCCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30127416 65 + 172585720 CAGGAACTA-AAATG-TTGCCTTTTTCTATTTTAGGAAAACTTCGAGCAGAGATAGGTGAGTTACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792092 65 - 170955103 CAGGAACTA-AAATG-TTGCCTTTTTCTATTTTAGGAAAACTTCGAGCAGAGATAGGTGAGTTACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838024 65 -   2996164 CAGGAACTA-AAATG-TTGCCTTTTTCTATTTTAGGAAAACTTCGAGCAGAGATAGGTGAGTTACAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     587478 65 +    766320 CAGGAACTA-AAATG-TTGCCTTTTTCTATTTTAGGAAAACTTCGAGCAGAGATAGGTGAGTTACAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29044698 64 -  71996105 CC-GAACTA-AAATG-TTGCCTTTTTCTATTTTAGGAAAACTTCGAGCAGAGATAGGTGAGTTACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     240265 65 +    290775 CAGGAACTA-AAATG-TTGCCTTTTTCTATTCTAGGAAAACTTCGAGCAGAGATAGGTGAGTTACAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2681587 65 -   3067355 CAGGAACTA-AAATG-TTGCCTTTTTCTATTTTAGGAAAACTTCGAGCAGAGATAGGTGAGTTACAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      59460 65 +    132061 CAGGAACTA-AAATG-TTGCCTTTTCCTATTTTAGGAAAACTTCGAGCAGAGATAGGTGAGTTCCAC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            13458 65 -    110772 CAGGAACTA-AAGTG-TTGCCTTTTTCTATTTTAGGAAAACTTCGAGCAGAGATAGGTGAGTTCCAT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     278356 65 -   1771730 TAGGAGCTA-AAATG-TTGCCTTTTTCTATTTTAGGAAAACTTCGAGCAGAGATAGGTGAGTTCCAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     349516 65 -    457564 CAGGAACTG-AAATG-TTGCCTTTTTCTATTTTAGGAAAACTTCGAGCAGAGATAGGTGAGTTCCAT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               181205 65 + 123392446 CAGGAACTA-AAATG-TTGCCTTTTTCTGTTTTAGGAAAACTTCGAGCAGAGCTAGGTGAGTTCCAG
i micMur3.chr6             I 574 C 0
s proCoq1.NW_012152574v1     653768 65 +    730504 CAGGAACTA-AAATG-TTGCCTTTTTCTATTTTAGGAAAACTTCGAGCAGAGATAGGTGAGTTCCAG
i proCoq1.NW_012152574v1   I 570 I 197
s otoGar3.GL873550           159335 65 +  18854210 CAATAACTA-AAATG-TTTCTTTTTTCTATTTTAGGAAAACTTCGAGCAGAGATAGGTGAGTTCCAG
i otoGar3.GL873550         C 0 I 3
s mm10.chr17               57972149 66 -  94987271 CAGGAACTA-AAATACCTGCTTTTTTCTATTTTAGGAAAACTTCGTGCAGAAGTAGGTGAGTTCCAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26263906 66 +  26524999 CGGAAACTCTAAATG-TTGCCTTTTTCTATTTTAGGAAAACTTCGAGCTGAGATAGGTGAGTGTTAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            85071 65 +    102524 CGGGAACAG-ACACG-TCACCTTCTTCTGTTTCAGGAAAACTCTTTGCAGAGATAGGTGAGTTCCAG
i dasNov3.JH582591         C 0 C 0

a score=528035.000000
s hg38.chr6_GL000254v2_alt   933052 51 +   4827813 TCATCGTTTCT-CCCAATTCTTGCCTTTTGG----TTTTT-TGGCAT-----AACGGAAATG
s panTro5.chr6             29895842 51 + 175400573 TCATCGTTTCT-CCCAATTCTTGCCTTTTGG----TTTTT-TGGCAT-----AACGGAAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129714 51 + 173848474 TCATCGTTTCT-CCCAATTCTTGCCTTTTGG----TTTTT-TGGCAT-----AACGGAAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929111 51 +   6154872 TCATCGTTTCT-CCCAATTCTTGCCTTTTGG----TTTTT-TGGCAT-----AACGGAAATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645946 51 + 122973662 TCATCATTTCT-CCCAATTCTTGCCCTTCAG----TTTTT-TGGCAT-----AACGGATATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30127481 51 + 172585720 TCATCCTTTCT-CTCAATTCTTGCCTTTCAG----TGTTT-TGGCAT-----AATGGAAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792157 51 - 170955103 TCATCCTTTCT-CTCAATTCTTGCCTTTCAG----TGTTT-TGGCAT-----AATGGAAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838089 51 -   2996164 TCATCCTTTCT-CTCAATTCTTGCCTTTCAG----TGTTT-TGGCAT-----AATGGAAATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     587543 51 +    766320 TCATCCTTTCT-CTCAATTCTTGCCTTTCAG----TGTTT-TGGCAT-----AATGGAAACG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29044762 51 -  71996105 TCATCCTTTCT-CTCAATTCTTGCCTTTCGG----TGTTT-TGGCAT-----AATGGAAATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     240330 51 +    290775 TCATCCTTTCT-CTCAATTCTTGCCTTTCGG----TGTTT-TGGCAT-----AATGGAAACG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2681652 51 -   3067355 TCATCCTTTCT-CTCAATTCTTGCCTTTCGG----TGTTT-TGGCAT-----AATGGAAATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      59525 55 +    132061 TCATCCTTTTT-CCCAATTCTTGTGTTTTGTTTTGTTTTT-TGGCAC-----AACGGAAATG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            13523 51 -    110772 TCATCCTTTTT-CCCAATTCTTGTGTTTTGT----TTTCT-TGGCAT-----AACAGAAATG
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     278421 50 -   1771730 TCATCCTTTTC-CCCAATTCTTGTGTTTTG-----TTTTT-TGGCAT-----AACGGAAATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     349581 55 -    457564 TCATCCTTTTA-CCCAATTCTTGTGTTTTTTCTTTTTTTT-TGGCAT-----AGCGGAAATG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               181270 50 + 123392446 -GCCCCTCTCT-CCCAATCCTTCCCTTTTGG----TCTTT-TGGCAC-----AACTGAAATG
i micMur3.chr6             C 0 I 157
s otoGar3.GL873550           159403 49 +  18854210 -CCCTCTTAGT-CTCAATTCTTCCCTTTTGG----TC-TT-TGGCAT-----AACAGAAATG
i otoGar3.GL873550         I 3 C 0
s mm10.chr17               57972215 51 -  94987271 ACACCCTCCCTCCCCAATTCCT--CTTCTGG----TCTTTATAACTT-----AACCAAAATA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26263972 51 +  26524999 TGGCTCTCTCT-CCGCCATCTGTCCCTCTGG----TGTTT-GGGCAT-----CACCAATGTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            85136 53 +    102524 ---TCGGTGCG-CCCCCAGCCCCCCCTCCTG----CTCCC-CCGCACCCCTGGACGGTTGTG
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     653833 197 +    730504 I

a score=246551.000000
s hg38.chr6_GL000254v2_alt   933103 26 +   4827813 GTCCCATTCTTGGAC-CGTCTCTCC----CT
s panTro5.chr6             29895893 26 + 175400573 GTCCCGTTCTTGGAC-CGTCTCTCC----CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129765 26 + 173848474 GTCCCGTTCTTGGAC-CGTCTCTCC----CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929162 26 +   6154872 GTCCCGTTCTTGGAC-CGTCTCTCC----CT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74645997 27 + 122973662 GTAGTGTTCTCGGACGTCTCTCTCT----CT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30127532 26 + 172585720 GTCGTGTTCTCGGAC-CATCTGTCC----CT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792208 26 - 170955103 GTCGTGTTCTCGGAC-CATCTGTCC----CT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838140 26 -   2996164 GTCGTGTTCTCGGAC-CATCTGTCC----CT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     587594 25 +    766320 GTCGCGTTCTC-GAC-CATCTATCC----CT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29044813 26 -  71996105 GTCGCGTTCTCGGAC-CACCTGTCC----CT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     240381 26 +    290775 GTCGCGTTCTCGGAC-CATCTGTCC----CT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2681703 26 -   3067355 GTCGCGTTCTCGGAC-CATCTGTTC----CT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      59580 26 +    132061 GTCACATTCTCAGAC-TGTCTCTGC----CT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            13574 26 -    110772 GTCATGTTCTCAGAC-TGTCTCTGC----CT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     278471 26 -   1771730 GTCACGTTCTCACAC-TGTCTCTGC----CT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     349636 26 -    457564 GTCACGTTCTCACAC-TGTCTCTGC----CT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           159452 30 +  18854210 GTCATGTTCTTAGGC-CGTCTCTGCCTCTCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57972266 26 -  94987271 TCCCTCTCTTCAGAC-CATTTCTGC----CT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26264023 26 +  26524999 GTCATTTTCTAGGAC-TACCTCTGC----AT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            85189 24 +    102524 GCCACGGTCTCG--C-TGCCTCTGC----CT
i dasNov3.JH582591         C 0 I 159
e micMur3.chr6               181320 157 + 123392446 I
e proCoq1.NW_012152574v1     653833 197 +    730504 I

a score=230181.000000
s hg38.chr6_GL000254v2_alt   933129 21 +   4827813 ----CT----CAATACCCTGTTTTCCCCT
s panTro5.chr6             29895919 21 + 175400573 ----CT----CAATACCCTGTTTTCCCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129791 21 + 173848474 ----CT----CAATACCCTGTTTTCCCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929188 21 +   6154872 ----CT----CAATACCCTGTTTTCCGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74646024 21 + 122973662 ----CT----CAATACCCTGTTTTCCCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30127558 21 + 172585720 ----CT----CAATACCCTGTTTTTCCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792234 21 - 170955103 ----CT----CAATACCCTGTTTTTCCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838166 21 -   2996164 ----CT----CAATACCCTGTTTTTCCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     587619 21 +    766320 ----CT----CAATACCCTGTTTTTCCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29044839 21 -  71996105 ----CT----CAATACCCTGTTTTTCCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     240407 21 +    290775 ----CT----CAATACCCTGTTTTTCCCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2681729 21 -   3067355 ----CT----CAATACCCTGTTTTTCCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      59606 21 +    132061 ----CT----CGAGATCCTGTTCTTCCCT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            13600 21 -    110772 ----CT----CAAGACCCTGTTCTTCCCT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     278497 21 -   1771730 ----CT----TGAGACCCTGTTCTTCCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     349662 19 -    457564 ----CT----CA--ACCCTGTTCTTCCTT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           159482 21 +  18854210 ----CT----CACTACCTTGTGATCCCTT
i otoGar3.GL873550         C 0 I 100
s mm10.chr17               57972292 25 -  94987271 TTCCCC----CAATGCTCCATGCTCCCTT
i mm10.chr17               C 0 I 42
s canFam3.chr35            26264049 25 +  26524999 ----CTACCCCCAGACCCTGTGCTTCCTC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               181320 157 + 123392446 I
e dasNov3.JH582591            85213 159 +    102524 I
e proCoq1.NW_012152574v1     653833 197 +    730504 I

a score=191698.000000
s hg38.chr6_GL000254v2_alt   933150  25 +   4827813 -------------------------------------------------CAGTTTCCCTT----T---------CTC-T----------------------------------------------ACAGTGGGT
s panTro5.chr6             29895940  25 + 175400573 -------------------------------------------------CAGTTTCCCTT----T---------CTC-T----------------------------------------------ACAGTGGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129812  25 + 173848474 -------------------------------------------------CAGTTTCCCTT----T---------CTC-T----------------------------------------------ACAGTGGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929209  25 +   6154872 -------------------------------------------------CAGTTTCCCTT----T---------CTC-T----------------------------------------------ACGGTGGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74646045  25 + 122973662 -------------------------------------------------CAGTTTCCCTT----T---------CTC-T----------------------------------------------ATGGTGGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30127579  25 + 172585720 -------------------------------------------------TAGTTTCCCTT----T---------CTC-T----------------------------------------------ATGGTGGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792255  25 - 170955103 -------------------------------------------------TAGTTTCCCTT----T---------CTC-T----------------------------------------------ATGGTGGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838187  25 -   2996164 -------------------------------------------------TAGTTTCCCTT----T---------CTC-T----------------------------------------------ATGGTGGGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     587640  25 +    766320 -------------------------------------------------TAGTTTCCCTT----T---------CTC-T----------------------------------------------ACGGTGGGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29044860  25 -  71996105 -------------------------------------------------TAGTTTCCCTT----T---------CTC-T----------------------------------------------ACGGTGGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     240428  25 +    290775 -------------------------------------------------TAGTTTCCCTT----T---------CTC-T----------------------------------------------ACGGTGGGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2681750  25 -   3067355 -------------------------------------------------TAGTTTCCCTT----T---------CTC-T----------------------------------------------ACGGTGGGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      59627  25 +    132061 -------------------------------------------------CAGTTTCCCTT----T---------CTC-T----------------------------------------------ATGGTGGAT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            13621  21 -    110772 -------------------------------------------------CAGCTTCCCTT------------------T----------------------------------------------ATGGTGGAT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     278518  25 -   1771730 -------------------------------------------------CAGTTTCCCTT----T---------CTC-T----------------------------------------------ATGGTGGGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     349681  29 -    457564 -------------------------------------------------CAGTTCCCCTTTCTTT---------CTC-T----------------------------------------------ATGGTGGAT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     654030  22 +    730504 -------------------------------------------------CAGTTTTCCTT----T---------CTC-T----------------------------------------------ACAGTG---
i proCoq1.NW_012152574v1   I 197 C 0
s otoGar3.GL873550           159603  22 +  18854210 -------------------------------------------------TGGGTTTGCTT----T---------CTCTT----------------------------------------------ATGGT----
i otoGar3.GL873550         I 100 C 0
s mm10.chr17               57972359  40 -  94987271 -------------------------------------------------TAGATTTTTTT----TTCACCCGAGCTC-T----------------------------------------TATAGCACGGTTTAC
i mm10.chr17               I 42 I 3
s canFam3.chr35            26264074 116 +  26524999 CCAAAATTCACTAGTATCTCAGACCCCTGCAGCCAGCCCTGAACTGCGGTAGGTCTCCTT----C---------CTC-TGCCTGCTGCCTGCTGGGGCACAGAGTCGAGCAGCTCCCTTTCTGCCATGGT----
i canFam3.chr35            C 0 C 0
e micMur3.chr6               181320 157 + 123392446 I
e dasNov3.JH582591            85213 159 +    102524 I

a score=887767.000000
s hg38.chr6_GL000254v2_alt   933175 65 +   4827813 GTGTCGTGCCTAGAACAAGTTTTAAGTAATTAAATAACAAAGACTCAGGATAAAAGATCC-TTTTT
s panTro5.chr6             29895965 65 + 175400573 GTGTCGTGCCTAGAACAAGTTTTAAGTAATTAAATAACAAAGACTCAGGATAAAAGATCC-TTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129837 65 + 173848474 GTGTCGTGCCTAGAACAAGTTTTAAGTAATTAAATAACAAAGACTCAGGATAAAAGATCC-TTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929234 65 +   6154872 GTGTCGTGCCTAGAACAAGTTTTAAGTAATTAAATAACAAAGACTCAGGATAAAAGATCC-TTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74646070 65 + 122973662 GTGTCGTGCCTAGAACAAGTTTTAAGTAATTAAATAACAAAGACTCAGGATAAAAGATCC-TTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30127604 65 + 172585720 GTGTCGTGCCTAGAACAAGTTTTAAGTAATTAAATAACAAAGACTCAGGATAAAGGATCC-TTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792280 65 - 170955103 GTGTCGTGCCTAGAACAAGTTTTAAGTAATTAAATAACAAAGACTCAGGATAAAGGATCC-TTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838212 65 -   2996164 GTGTCGTGCCTAGAACAAGTTTTAAGTAATTAAATAACAAAGACTCAGGATAAAGGATCC-TTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     587665 65 +    766320 GTGTTGTGCCTAGAGCAAGTTTTAAGTAATTAAATAACAAAGACTCAGGATAAAGGATCC-TTTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29044885 65 -  71996105 GTGTTGTGCCTAGAGCAAGTTTTAAGTAATTAAATAACAAAGACTCAGGATAAAGGATCC-TTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     240453 65 +    290775 GTGTTGTGCCTAGAGCAAGTTTTAAGTAATTAAATAACAAAGACTCAAGATAAAGGATCC-TTTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2681775 65 -   3067355 GTGTCGTGCCTAGAGCAAGTTTTAAGTAATTAAATAACAAAGACTCAGGATAAAGGATCC-TTTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      59652 66 +    132061 GTGTCCGGCCTAGAACAAGTTTTAAGTAATTAAATAACAAAGACTCAGAATAAAGGATCCTTTTTT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            13642 65 -    110772 GTGTCATGCCTAGAACAAGTTTTAAGTAATTAAATAACAAAGACTCAGGATAAAGGATCC-TTTTT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     278543 65 -   1771730 GTGTCATGCCGAAAACAAGTTTTAAGTAATTAAATAACAAAGACTCAGGATAAAGGATCC-TTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     349710 65 -    457564 GTGTCGTGCCTAGAACAAGTTTTAAGTAATTAAATAACAAAGACTCAGGATAAAGGATCC-TTTTT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               181477 65 + 123392446 GTGTCTTGACTAGAATCAGTTTTAAGCAATAAAATAACAAAGACTCTGGGGAGAAAGGAT-CCTTT
i micMur3.chr6             I 157 C 0
s proCoq1.NW_012152574v1     654052 64 +    730504 -TGTCTTCACTAGAATCAGTTTTAAGCAGTTAAATAACAAAGACTCAGAGGAGAAAGGAT-CCTTT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           159625 62 +  18854210 GTGTCTTGTCTAGAATCAG-TTTAAGTAATTAAATAACAAAGACTCAGAGAAGGAA--CC-CTTTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57972402 60 -  94987271 GCATCAgggctagaaccaaccttgagggatttag----atagatccaagg-aagggactc-ccttt
i mm10.chr17               I 3 C 0
s canFam3.chr35            26264190 65 +  26524999 CACTCACAACTAGACACAGTTTAAAGTAACTTAATAACAAAGGCTCTGGGGAGGAGAGGG-ATCTG
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            85213 159 +    102524 I

a score=1216246.000000
s hg38.chr6_GL000254v2_alt   933240 68 +   4827813 GAGTGCCCTACTAAATCCATTTCCATTTGTTTCTCTTTCAGAGAATCTCCACCGGACTTTTGGTAAGT
s panTro5.chr6             29896030 68 + 175400573 GAGTGCCCTACTAAATCCATTTCCATTTGTTTCTCTTTCAGAGAATCTCCACCGGACTTTTGGTAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129902 68 + 173848474 GAGTGCCCTACTAAATCCATTTCCATTTGTTTCTCTTTCAGAGAATCTCCACCGGACTTTTGGTAAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929299 68 +   6154872 GAGTGCCCTACTAAATCCATTTCCATTTGTTTCTCTTTCAGAGAATCTCCACCGGACTTTTGGTAAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74646135 68 + 122973662 GAGTGCCCTGCTAAACCCATTTCCATTTGTTTCTCTTTCAGAGAATCTCCACCGGACTTTTGGTAAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30127669 68 + 172585720 GAGTGCCCTACTAAATCTATTTCCATTTGTTTCTCTTTCAGAGAATCTCCACCGGACTTTTGGTAAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792345 68 - 170955103 GAGTGCCCTACTAAATCTATTTCCATTTGTTTCTCTTTCAGAGAATCTCCACCGGACTTTTGGTAAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838277 68 -   2996164 GAGTGACCTACTAAATCTATTTCCATTTGTTTCTCTTTCAGAGAATCTCCACCGGACTTTTGGTAAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     587730 68 +    766320 GAGTGCCCTACTAAATCCATTTCCATTTGTTTCTCTTTCAGAGAATCTCCACCGGACTTTTGGTAAGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29044950 68 -  71996105 GAGTGCCCTACTAAATCCATTTCCATTTGTTTCCCTTTCAGAGAATCTCCACCGGACTTTTGGTAAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     240518 68 +    290775 GAGTGCCCTACTAAATCCATTTCCATTTGTTTCTCTTTCAGAGAATCTCCACCGGACTTTTGGTAAGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2681840 68 -   3067355 CAGTGCCCTACTAAATCCATTTCCATTTATTTCTCTTTCAGAGAATCTCCACCGGACTTTTGGTAAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      59718 68 +    132061 GAATGTCCTACTAAATCCCTTTCCATTTGTTTCTCTTTCAGAGAATCTCCACCGGACTTTTGGTAAGT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            13707 68 -    110772 GAATACCCTACTAAATCCATTTCCATTTGTTTCTCTTTCAGAGAATCTCCACCGGACTTTTGGTAAGT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     278608 68 -   1771730 GAATGCCCTACTAAATCCATTTCCATTTGTTTCTCTTTCAGAGAATCTCCACCGGACTTTTGGTAAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     349775 68 -    457564 GAATGTCCTACTAAATCCATTTCCATTTGTTTCTCTTTCAGAGAATCTCCACCGGACTTTTGGTAAGT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               181542 68 + 123392446 GAGCACCCCACTGAGTCCATTTCCATTTGTTTCCCTTTCAGAGAATCTCCACCGGACTTTTGGTGAGT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     654116 68 +    730504 AAGCGCCCCACTGAGTCCATTTCCGTTTTTTCCCCTTTCAGAGAATCTCCACCGGACTTTTGGTAAGT
i proCoq1.NW_012152574v1   C 0 I 390
s otoGar3.GL873550           159687 64 +  18854210 TGATGCCCTACTGAGTCCATTTTCGTTT----CTCTTTCAGAGAATCTCCACCGGACTTTTGGTAAGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57972462 66 -  94987271 cagtTCCTTACTAAGTCTATTCTTATTTGT--CCTTTTCAGAGAATCTCCATCGGACTTTTGGTAAGT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26264255 61 +  26524999 -------CCACCGAGTCCCTTTTCTGTGTGTTTTCTTTCAGAGAACCTCCACCGGACTTTTGGTAAGT
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            85372 65 +    102524 GAGGGTCC-ACTAAGCCCCCTTCC--TTGCTCCCCTTTCAGAGAATCTCCACCGGACTTTCGGTAAGT
i dasNov3.JH582591         I 159 C 0

a score=415371.000000
s hg38.chr6_GL000254v2_alt   933308 31 +   4827813 TCCGGCATGTCTAGGCCCTCCCAGGTCAACT
s panTro5.chr6             29896098 31 + 175400573 TCCGGCATGTCTAGGCCCTCCCAGGTCAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30129970 31 + 173848474 TCCGGCATGTCTAGGCCCTCCCAGGTCAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929367 31 +   6154872 TCCGGCATGTCTAGGCCCTCCCGGGTCAACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74646203 31 + 122973662 TCTGGCATATCTAGGCCCTCCCAGGTCAACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30127737 31 + 172585720 TCTGGTATATCCAGGCCCTCCCAGGTCAACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792413 31 - 170955103 TCTGGTATATCCAGGCCCTCCCAGGTCAACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838345 31 -   2996164 TCTGGTATATCCAGGCCCTCCCAGGTCAACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     587798 31 +    766320 TCTGGCATATCCAGGCCCTCCCAGGTCAACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29045018 31 -  71996105 TCTGGCATATCCAGGCCCTCCCAGGTCAACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     240586 31 +    290775 TCTGGCATATCCAGGCCCTCCCAGGTCAACT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2681908 31 -   3067355 TCTGGCATATCCAGGCCCTCCCAGGTCAATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      59786 31 +    132061 TCTGGCATATCCAGGCCCTCCCAGGTCAACT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            13775 31 -    110772 TCTGGCATATCCAGGCCCTCCCAGGTCAACT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     278676 31 -   1771730 TCTGGCATATCCAGGCCCTCCCAGGTCTACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     349843 31 -    457564 TCTGGCATATCCAGGCCCTCCCAGATCAACT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               181610 30 + 123392446 GCTGGTGTGTC-CGGCCCTCCCAGGTCAACT
i micMur3.chr6             C 0 I 13423
s otoGar3.GL873550           159751 31 +  18854210 GCTGGCATATCAAGGCCCTCCCAAGTTAAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57972528 31 -  94987271 TCAGGCATATCCCAACCCTCCCAAGTCACCG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26264317 28 +  26524999 CCAGAAA---CCAGGTCTTCCCAGGTCAGCT
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            85437 18 +    102524 ----------GCTGGTGCTCCCGG--CAGC-
i dasNov3.JH582591         C 0 C 0
e proCoq1.NW_012152574v1     654184 390 +    730504 I

a score=1305791.000000
s hg38.chr6_GL000254v2_alt   933339 126 +   4827813 TGGTATTTCACTCTAGTTCCAGTCACCTGGGGGAACAAGGACCCCTGGCTCCTGGTTGAGTCCCTTCCTCTCTTCTCTTTT-CTTTCTTTAAA-TAAGAAGTCATTTGCATTTAGGATTGGTAAAATC
s panTro5.chr6             29896129 126 + 175400573 TGGTATTTCACTCTAGTTCCAGTCACCTGGGGGAACAAGGACCCCTGGCTCCTGGTTGGGTCCCTTCCTCTCTTCTCTTTT-CTTTCTTTAAA-TAAGAAGTCATTTGCATTTAGGATTGGTAAAATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30130001 126 + 173848474 TGGTATTTCACTCTAGTTCCAGTCACCTGGGGGAACAAGGACCCCTGGCTCCTGGTTGGGTCCCTTCCTCTCTTCTCTTTT-CTTTCTTTAAA-TAAGAAGTCATTTGCATTTAGGATTGGTAAAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929398 126 +   6154872 TGGTATTTCACTCTAGTTCCAGTCACCTGGGGGAACAAGGACCCCTGGCTCCTGGTTGGGtctcttcctctcttctctttt-ctttcttTAAA-TAAGAAGTCATTTGCATTTAGGATTGGTAAAATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74646234 126 + 122973662 TGGTATTTCACTCTAGTTCCAGTCACCTGGGGGAACAAGGACCCCTGGCTCCTGGTTGGGTCCCTTCCTCTCTTCTCTTTT-CTTTCTTTAAA-TAAGAAGTCATTTGCATTTAGGATTGGTAAAATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30127768 121 + 172585720 TGGCATTTCACTGTAGTTCCAGTCACCTGGGGAAACAAGGACCCCTGGCTCCTGGTTGGGTCCCTTCC-----TCTCTTTT-CTTTCTTTAAA-TAAGAAGTCATTTGCATTTAGGATTGGTAAAATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792444 121 - 170955103 TGGCATTTCACTGTAGTTCCAGTCACCTGGGGAAACAAGGACCCCTGGCTCCTGGTTGGGTCCCTTCC-----TCTCTTTT-CTTTCTTTAAA-TAAGAAGTCATTTGCATTTAGGATTGGTAAAATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838376 121 -   2996164 TGGCATTTCACTGTAGTTCCAGTCACCTGGGGGAACAAGGACCCCTGGCTCCTGGTTGGGTCCCTTCC-----TCTCTTTT-CTTTCTTTAAA-TAAGAAGTCATTTGCATTTAGGATTGGTAAAATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     587829 121 +    766320 TGGCATTTCACTGTAGTTCCAGTCACCTGGGGGAACAAGGACCCCTGGCTCCTGGCTGGGTCCCTTCC-----TCTCTTTT-CTTCCTTTAAA-TAAGAAGTCATTTGCATTTAGGATTGGTAAAATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29045049 121 -  71996105 TGGCATTTCACTGTAGTTCCAGTCACCTGGGGGAACAAGGACCCCTGGCTCCTGGCTGGGTCCCTTCC-----TCTCTTTT-CTTTCTTTAAA-TAAGAAGTCATTTGCATTTAGGATTGGTAAAATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     240617 121 +    290775 TGGCATTTCACTGTAGTTCCAGTCACCTGGGGGAACAAGGACCCCTGGCTCCTGGCTGGGTCCCTTCC-----TCTCTTTT-CTTCCTTTAAA-TAAGAAGTCATTTGCATTTAGGATTGGTAAAATC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2681939 121 -   3067355 TGGCATTTCACTGTAGTTCCAGTCACCTGGAGGAACAAGGACCCCTGGCTCCTGGTTGGGTCCCTTCC-----TCTCTTTT-CTTTCTTTAAA-ATAGAAGTCATTTGCATTTAGGATTGGTAAAATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      59817 121 +    132061 GGGTATTTCATTCCAGTTCCAGTCACCTAGGGGAACAAGGACACCTGGGTCTTAGTTGGGTCCTTTTC-----TCTCTTTT-GTTTCTTTAAA-TAAGAATCCATTTGCATTTAGGATTGGTAAAATC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            13806 121 -    110772 TGGTATTTCATTCCAGTTCCAGTCACCTGGGGGAACAAGGACACCTGCATCTTGGTTGGGTCCCTTTC-----TCTCTTTT-CTTTCTTTAAA-TAAGAATCCATTTGCATTTAGGATTGGTAAAATC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     278707 120 -   1771730 CGGTATTTCATTCCAGTTCCAGTCACCTGGGGGAACAAATACACCTGGCTCTTGGTTGGGTCCCTTAA-----TCTTTTTT--TTTCTTTAAA-TAAGAATCCATTTGCATTTAGGATTGGTAAAATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     349874 121 -    457564 CGGTATTTCATTCCAGTTCCAGTCACCTGGGGGAACTAGGACACCTGGGTCTTGGTTGGGTCCCTTTC-----TCTCTTTT-GTTTCTTTAAA-TAAGAATCCATTTGCATTTAGGATTGGTAAAATC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           159782 126 +  18854210 TGGAATTTTTATTGACTTCCAGTCACCTGGGGGAACAAGGAC-CCAAGTCCCTGGTAGATTTCCTCACTCTCTTCTCTTTTTCTTTTTTTGAT-TAAGTCATCATTTGCATTTAGAAATGGTAAGATA
i otoGar3.GL873550         C 0 I 295
s mm10.chr17               57972559  92 -  94987271 TGGGACTTCACT--------AGTGGCCTGGGGG-ACTAGAACCAGTGGCTTTTTGTAAGGCCCCTCCA-----CCTTTTTT-CTTC---------------------ACATTCAAGATCTATAGGAAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26264345  86 +  26524999 ------------------------------GGAAATAAGAAC-CCTGGTTCCTCGT----TCCTTTCC-----ACTGCCTT-TTTCTTTGAAAGTCAGCATCCACT-GCCTCCAGGATGGGGGAGATG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            85455  74 +    102524 -------------------------CCTGG-------------CCCAGGGCCTGCTC---TCCCTCCCGCCAACCTTTTTT-TTTTTTTTTGG-CCA----TCATTTGCATCTAGGGTTAG-------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e proCoq1.NW_012152574v1     654184 390 +    730504 I

a score=573069.000000
s hg38.chr6_GL000254v2_alt   933465 50 +   4827813 ataat-aa-----aaat-actcatgtactgtttttatgtgccaggcactattctaac
s panTro5.chr6             29896255 50 + 175400573 ataat-aa-----aaat-actcatgtactgtttttatgtgccaggcactattctaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30130127 50 + 173848474 ataat-aa-----aaat-actcatgtactgtttttatgtgccaggcactattctaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929524 50 +   6154872 ataat-aa-----aaat-actcatgtactgtttttatgtgccaggcactattctaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74646360 50 + 122973662 ataat-aa-----aaat-actcatgtactgtttttatgtgccaggcactattctaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30127889 50 + 172585720 ataat-aa-----aaat-actcatatactatttttatgtgccagacactattctaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792565 50 - 170955103 ataat-aa-----aaat-actcatatactatttttatgtgccagacactattctaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838497 50 -   2996164 ataat-aa-----aaat-actcatatactatttttatgtgccagacactattctaac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     587950 50 +    766320 ataat-aa-----aaat-actcatgtactatttttatgtgccagacactattctaac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29045170 50 -  71996105 ataat-aa-----aaat-actcatgtactatttttatgtgccagacactattctaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     240738 50 +    290775 ataat-aa-----aaat-actcatgtactatttttatgtgccagacactattctaac
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2682060 50 -   3067355 ataat-aa-----aatt-actcatgtactatttttatgtgccagacactattctaac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      59938 51 +    132061 ataataaa-----aaat-agtcatgtactgtttttatgggccaggcattatcctaac
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            13927 50 -    110772 Gtaat-aa-----aagt-actcatgtactgtttttatgtcccaggcattatcctaac
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     278827 50 -   1771730 ATAAT-AA-----AAAT-ACTCACGTACTGTTTTTATGCACCAGACGTTATCCTAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     349995 50 -    457564 atagt-aa-----aaat-actcatgtgctgtttttatgtgccaggcattatcctaac
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           160203 51 +  18854210 ATAAA-AAT----AAAT-ACTCATCTACAGCCTTTATTTGCCAGGTACTATACTAAC
i otoGar3.GL873550         I 295 C 0
s mm10.chr17               57972651 48 -  94987271 ---GT-AG-----CAATCATTAATGTACCATATTCCAGTGTCAGGCCCTACACTGAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26264431 48 +  26524999 --------GCAGCAAAT-ACTTGGGGGACACTTCTCTGTGTCAGGCCCTATGCCAGC
i canFam3.chr35            C 0 I 315
s dasNov3.JH582591            85529 48 +    102524 atact-agc----aaat-gcttacatgatacttt---gtgtctcacactattctaac
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e proCoq1.NW_012152574v1     654184 390 +    730504 I

a score=194774.000000
s hg38.chr6_GL000254v2_alt   933515 23 +   4827813 tactttacaa-----aaac-gttatct-ta
s panTro5.chr6             29896305 23 + 175400573 tactttacaa-----aaat-gttatct-ta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30130177 23 + 173848474 tactttacaa-----aaat-gttatct-ta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929574 23 +   6154872 tactttagaa-----aaac-gttatct-ta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74646410 23 + 122973662 tgctttatga-----aaac-gttatct-ta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30127939 23 + 172585720 tgctttacaa-----aaac-gttatct-ta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792615 23 - 170955103 tgctttacaa-----aaac-gttatct-ta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838547 23 -   2996164 tgctttacaa-----aaat-gttatct-ta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     588000 23 +    766320 tgctttacaa-----aaac-gttatct-ta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29045220 23 -  71996105 tgctttacaa-----aaac-gttatct-ta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     240788 23 +    290775 tgctttacaa-----aaac-gttatct-ta
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2682110 23 -   3067355 tgctttacaa-----aaac-gttatct-ta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      59989 23 +    132061 tgctttacaa-----aaat-gttttct-ta
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            13977 23 -    110772 tgctttacaA-----AAAT-GTTTTCT-TA
i saiBol1.JH378388         C 0 M 2744
s cebCap1.NW_016107755v1     278877 23 -   1771730 TGCTTTACAA-----AAAT-GTTTTCT-TA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     350045 23 -    457564 tgctttacaa-----aaat-gtttcct-ta
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           160254 24 +  18854210 TACTTTATAA-----AAACAGACCCCC-CA
i otoGar3.GL873550         C 0 I 26
s mm10.chr17               57972699 27 -  94987271 T--TTTACCAATTGTAAAC-TTtatatgta
i mm10.chr17               C 0 I 3
s dasNov3.JH582591            85577  8 +    102524 aggtttac----------------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e proCoq1.NW_012152574v1     654184 390 +    730504 I
e canFam3.chr35            26264479 315 +  26524999 I

a score=764718.000000
s hg38.chr6_GL000254v2_alt   933538 101 +   4827813 ttctgtttaactccttatgcacatg-------------atctctcttttcaggaatgg--caaaacagaggtaaatagaTCGTTT------------------------------------------ACACGTAAACCTG--ATGTCTGGTTGGGGAGGT
s panTro5.chr6             29896328 101 + 175400573 ttCTGTTTAACTCCTTATGCACATG-------------ATCTCTCTTTTCAGGAATGG--CAAAACAGAGGTAAATAGATCGTTT------------------------------------------ACACGTAAACCTG--ATGTCTGGTTGGGGAGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30130200 101 + 173848474 ttCTGTTTAACTCCTTATGCACATG-------------ATCTCTCTTTTCAGGAATGG--CAAAACAGAGGTAAATAGATCGTTT------------------------------------------ACTCGTAAACCTG--ATGTCTGGTTGGGGAGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929597 101 +   6154872 ttCTGTTTAACTCCTTATGCACATG-------------ATCTCTCTTTTCAGGAATGG--CAAAACAGAGGTAAATAGATCGTTT------------------------------------------ACACGTAAACCTG--ATGTCTGGTTGGGGAGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74646433 143 + 122973662 ttctgtttaactccttatgcacatg-------------atctctcttttcaggaatgg--caaaacagaggtaaatagaCTGtttttttattttttatttttactttttttGGTAAATAGATTGTTGACACGTAAACCTG--ATGTCTGGTTGGGGAGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30127962  85 + 172585720 ttCTGCTTAACTCCTTATGCACATG-------------ATTTCTCTTTTCAGGAAT------------------ATAGATCGTTT------------------------------------------ACACATAAACCTG--ATGTCTGGTTGGGGAGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792638  85 - 170955103 ttCTGCTTAACTCCTTATGCACATG-------------ATTTCTCTTTTCAGGAAT------------------ATAGATCGTTT------------------------------------------ACACATAAACCTG--ATGTCTGGTTGGGGAGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838570  85 -   2996164 ttCTGCTTAACTCCTTATGCACATG-------------ATTTCTCTTTTCAGGAAT------------------ATAGATCGTTT------------------------------------------ACACATAAACCTG--ATGTCTGGTTGGGGAGGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     588023  85 +    766320 ttCTGCTTAACTCCTTATGCACATG-------------ATTTCTCTTTTCAGGAAT------------------ATAGATCGTTT------------------------------------------ACACATAAACCTG--ATGTCTGGTTGGGGAGGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29045243  85 -  71996105 ttCTGCTTAACTCCTTATGCACATG-------------ATTTCTCTTTTCAGGAAT------------------ATAGATCGTTT------------------------------------------ACACATAAACTTG--ATGTCTGGTTGGGGAGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     240811  85 +    290775 ttCTGCTTAACTCCTTATGCACATG-------------ATTTCTCTTTTCAGGAAT------------------ATAGATCGTTT------------------------------------------ACACATAAACCTG--ATGTCTGGTTGGGGAGGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2682133  85 -   3067355 ttCTGCTTAACTCCTTATGCACATG-------------ATTTCTCTTTTCAGGAAT------------------ATAGATCGTTT------------------------------------------ACACATAAACCTG--ATGTCTGGTTGGGGAGGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      60012  99 +    132061 ttctgc-tgactccttatgcgtatt-------------atttctcatttgaggaatta--caaaaaagaggtaaatagaTTGTTT------------------------------------------ACACATAAACC-G--ATGTCTGGTTGGGGAGGT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     278900  99 -   1771730 TTCTGC-TGACTCCTTATGCACATT-------------ATTTCTCATTTCAGTAATTA--CAAAACAGAGGTAAATAGATCGTTT------------------------------------------ACAGATAAACC-A--ATGTCTGGTTAGGGAAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     350068  99 -    457564 ttctgc-tgactccttatgcacatt-------------atttctcatttcaggaatta--caaaacagaggtaaatagaTCGTTT------------------------------------------ACACATAAACC-G--ATGTCTGGTTGGGGAGGT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           160304  98 +  18854210 TTCTGT-TAACTACTTATGCATATC-------------ATTTCC--TTTCAGGAATTA--CAAAAGGGAAGTAAATAGGTCTTTT------------------------------------------GCACATAAAGTTG--GTGTTTAGTAGGGGAGGT
i otoGar3.GL873550         I 26 C 0
s mm10.chr17               57972729 111 -  94987271 atgcatatatgtacttatgtgtatatatatgtatatatatTCATCTTCT---GAATTA--TAAAAAGTGGTTAAAGAGATCCTTT------------------------------------------GCACATAAAATTG--CTTGCTGGTGGGAAAaat
i mm10.chr17               I 3 I 1815
s dasNov3.JH582591            85585  96 +    102524 ttgtgt-taactcatttTGTAGGAG---------------------TTGCAAACACTGCACAAAGGGGAGGTGGAGAGATTCTTT------------------------------------------ACAGAGGAGCTCGCAGTGTCTAGTTGAGGAGGG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e proCoq1.NW_012152574v1     654184 390 +    730504 I
e canFam3.chr35            26264479 315 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M

a score=41483.000000
s hg38.chr6_GL000254v2_alt   933639 6 +   4827813 GAAAC--A
s panTro5.chr6             29896429 6 + 175400573 GAAAC--A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30130301 6 + 173848474 GAAAC--A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929698 6 +   6154872 GAAAC--A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74646576 6 + 122973662 GAAAC--A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30128047 6 + 172585720 GAAAC--G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792723 6 - 170955103 GAAAC--G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838655 6 -   2996164 GAAAC--G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     588108 6 +    766320 GAAAC--G
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29045328 6 -  71996105 GAAAT--G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     240896 6 +    290775 GAAAC--G
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2682218 6 -   3067355 AAAAC--G
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      60111 8 +    132061 GAAACATA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     278999 8 -   1771730 GAAACATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     350167 8 -    457564 GAAACATA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           160402 6 +  18854210 GAAAC--A
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            85681 6 +    102524 GAGGC--A
i dasNov3.JH582591         C 0 I 1200
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e proCoq1.NW_012152574v1     654184 390 +    730504 I
e canFam3.chr35            26264479 315 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M

a score=35887.000000
s hg38.chr6_GL000254v2_alt   933645  5 +   4827813 AACAG----------
s panTro5.chr6             29896435  5 + 175400573 AACAG----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30130307  5 + 173848474 AACAG----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929704  5 +   6154872 AACAG----------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74646582  5 + 122973662 AACAA----------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30128053  5 + 172585720 AACAG----------
i rheMac8.chr4             C 0 I 2
s macFas5.chr4             29792729  5 - 170955103 AACAG----------
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1    2838661  5 -   2996164 AACAG----------
i macNem1.NW_012011356v1   C 0 I 2
s cerAty1.NW_012002711v1     588114  5 +    766320 AACAG----------
i cerAty1.NW_012002711v1   C 0 I 2
s chlSab2.chr17            29045334  5 -  71996105 AACAG----------
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012099233v1     240902  5 +    290775 AACAG----------
i manLeu1.NW_012099233v1   C 0 I 802
s colAng1.NW_012115566v1    2682224  5 -   3067355 AACAG----------
i colAng1.NW_012115566v1   C 0 I 2
s calJac3.chrUn_GL286223      60119  5 +    132061 AACAG----------
i calJac3.chrUn_GL286223   C 0 I 2
s cebCap1.NW_016107755v1     279007  5 -   1771730 AACAG----------
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018509740v1     350175  5 -    457564 AACAG----------
i aotNan1.NW_018509740v1   C 0 I 2
s otoGar3.GL873550           160408 15 +  18854210 TATACTATATCAGGA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654184 390 +    730504 I
e canFam3.chr35            26264479 315 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M

a score=281776.000000
s hg38.chr6_GL000254v2_alt   933650 30 +   4827813 AAACAAGACACAACTGTATCACCTGTACTT
s panTro5.chr6             29896440 30 + 175400573 AAACAAGACACAACTGTATCACCTGTACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30130312 30 + 173848474 AAACAAGACACAACTGTATCACCTGTACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929709 30 +   6154872 AAACAAGACACAACTGTATCACCTGTACTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74646587 30 + 122973662 AAACAAGACACAACTGTATCACCTGTACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30128060 30 + 172585720 AAACAAGACACAACTGTATCACCTGTACTT
i rheMac8.chr4             I 2 C 0
s macFas5.chr4             29792736 30 - 170955103 AAACAAGACACAACTGTATCACCTGTATTT
i macFas5.chr4             I 2 C 0
s macNem1.NW_012011356v1    2838668 30 -   2996164 AAACAAGACACAACTGTATCACCTGTACTT
i macNem1.NW_012011356v1   I 2 C 0
s cerAty1.NW_012002711v1     588121 30 +    766320 AAACAAGACACAACTGTATCACCTGTATTT
i cerAty1.NW_012002711v1   I 2 C 0
s chlSab2.chr17            29045341 30 -  71996105 AAACAAGACACAACTGTATCACCTGTATTT
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012099233v1     241709 30 +    290775 AAACAAGACACAACTGTATCACCTGTATTT
i manLeu1.NW_012099233v1   I 802 C 0
s colAng1.NW_012115566v1    2682231 30 -   3067355 AAACAAGACACAACTGTATCACCTGTACTT
i colAng1.NW_012115566v1   I 2 C 0
s calJac3.chrUn_GL286223      60126 30 +    132061 AAATAAGACACAACTATATCACCTGTACtt
i calJac3.chrUn_GL286223   I 2 I 3
s cebCap1.NW_016107755v1     279013 30 -   1771730 AAATAAGACATAACTATATCACCTGTACtt
i cebCap1.NW_016107755v1   I 1 I 619
s aotNan1.NW_018509740v1     350182 30 -    457564 AAATAAGACACAACTATATCACCTGTACTT
i aotNan1.NW_018509740v1   I 2 I 271
s otoGar3.GL873550           160423 25 +  18854210 AAACAAAGCACA----TATAAAATATATC-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654184 390 +    730504 I
e canFam3.chr35            26264479 315 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M

a score=10241.000000
s hg38.chr6_GL000254v2_alt   933680 8 +   4827813 --ATATTTCT-
s panTro5.chr6             29896470 8 + 175400573 --ATATTTCT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30130342 8 + 173848474 --ATATTTCT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929739 8 +   6154872 --ATATTTCT-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74646617 8 + 122973662 --ATATTTCT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30128090 5 + 172585720 --ATATT----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792766 5 - 170955103 --ATATT----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838698 5 -   2996164 --ATATT----
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     588151 5 +    766320 --ATATT----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29045371 5 -  71996105 --ATATT----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     241739 5 +    290775 --ATATT----
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2682261 5 -   3067355 --ATATT----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      60159 5 +    132061 --ttttt----
i calJac3.chrUn_GL286223   I 3 I 614
s otoGar3.GL873550           160448 8 +  18854210 ATATATT---T
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654184 390 +    730504 I
e canFam3.chr35            26264479 315 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M
e aotNan1.NW_018509740v1     350212 271 -    457564 I
e cebCap1.NW_016107755v1     279043 619 -   1771730 I

a score=4408.000000
s hg38.chr6_GL000254v2_alt   933688 12 +   4827813 GCTTTACAAACT
s panTro5.chr6             29896478 12 + 175400573 GCTTTACAAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30130350 12 + 173848474 GCTTTACAAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929747 12 +   6154872 GCTTTACAAACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74646625 12 + 122973662 GCTTTACAAACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30128095  1 + 172585720 -----------T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792771  1 - 170955103 -----------T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838703  1 -   2996164 -----------T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     588156  1 +    766320 -----------T
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29045376  1 -  71996105 -----------T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     241744  1 +    290775 -----------T
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2682266  1 -   3067355 -----------T
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           160456 12 +  18854210 GCATGGCAGAAT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654184 390 +    730504 I
e canFam3.chr35            26264479 315 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M
e aotNan1.NW_018509740v1     350212 271 -    457564 I
e cebCap1.NW_016107755v1     279043 619 -   1771730 I
e calJac3.chrUn_GL286223      60164 614 +    132061 I

a score=2660.000000
s hg38.chr6_GL000254v2_alt   933700 1 +   4827813 -C
s panTro5.chr6             29896490 1 + 175400573 -C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30130362 1 + 173848474 -C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929759 1 +   6154872 -C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74646637 1 + 122973662 -C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30128096 1 + 172585720 -C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792772 1 - 170955103 -C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838704 1 -   2996164 -C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     588157 1 +    766320 -C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29045377 1 -  71996105 -C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     241745 1 +    290775 -C
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2682267 1 -   3067355 -C
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     279662 1 -   1771730 -C
i cebCap1.NW_016107755v1   I 619 C 0
s aotNan1.NW_018509740v1     350483 1 -    457564 -C
i aotNan1.NW_018509740v1   I 271 C 0
s otoGar3.GL873550           160468 1 +  18854210 G-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654184 390 +    730504 I
e canFam3.chr35            26264479 315 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M
e calJac3.chrUn_GL286223      60164 614 +    132061 I

a score=45180.000000
s hg38.chr6_GL000254v2_alt   933701 5 +   4827813 AGGAT
s panTro5.chr6             29896491 5 + 175400573 AGGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30130363 5 + 173848474 AGGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929760 5 +   6154872 AGGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74646638 5 + 122973662 AGGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30128097 5 + 172585720 AGGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792773 5 - 170955103 AGGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838705 5 -   2996164 AGGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     588158 5 +    766320 AGGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29045378 5 -  71996105 AGGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     241746 5 +    290775 AGGAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2682268 5 -   3067355 AGGAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      60778 5 +    132061 AGGAT
i calJac3.chrUn_GL286223   I 614 C 0
s cebCap1.NW_016107755v1     279663 5 -   1771730 AGGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     350484 5 -    457564 AGGAT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           160469 2 +  18854210 AG---
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654184 390 +    730504 I
e canFam3.chr35            26264479 315 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M

a score=1157635.000000
s hg38.chr6_GL000254v2_alt   933706 103 +   4827813 GTTTCCATGAGTACAGA-----------ACATG---ACTAATCAGAGAAGACCTCAT--AGAGGAATAGA--AAAGCCACCAAGccccactaggaa-ttgacccctcaaggacatggtttct
s panTro5.chr6             29896496 103 + 175400573 GTTTCCATGAGTACAGA-----------ACATG---ACTAATCAGAGAAGACCTCAT--AGAGGAATAGA--AAAGCCACCAAGccccactaggaa-ttgacccctcaaggacatggtttct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30130368 103 + 173848474 GTTTCCATGAGTACAGA-----------ACATG---ACTAATCAGAGAAGACCTCAT--AGAGGAATAGA--AAAGCCACCAAGccccactaggaa-ttgacccctcaagcacatggtttct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929765 103 +   6154872 GTTTCCATGAGTACACA-----------ACATG---ACTAATCAGAGAAGACCTCAT--AGAGGAATAGA--AAAGCCACCAAGccccactaggaa-ttgacccctcaaggacatggtttct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74646643 103 + 122973662 GTTTCCATGAGTACAGA-----------ACATG---ACTAATCAGAGAAGACCTTAT--GGAGGAATAGA--AAAGCCACCAAAccccactaggaa-ttgacccctcaaggacatggtttat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30128102 103 + 172585720 GTTTCCATGAGTACAGA-----------ACATG---ACTAATCAGAGAAGACCTCAT--GGACAAATAGA--AAAGCCACCAAGccccactaggaa-ttgaccccccaaggacatggtttct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792778 103 - 170955103 GTTTCCATGAGTACAGA-----------ACATG---ACTAATCAGAGAAGACCTCAT--GGACAAATAGA--AAAGCCACCAAGccccactaggaa-ttgatcccccaaggacatggtttct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838710 103 -   2996164 GTTTCCATGAGTACAGA-----------ACATG---ACTAATCAGAGAAGACCTCAT--GGACAAATAGA--AAAGCCACCAAGccccactaggaa-ttgaccccccaaggacatggtttct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     588163 103 +    766320 GTTTCCATGAGTACAGA-----------ACATG---ACTAATCAGAGAAGACCTCAT--GGACAAATAGA--AAAGCCACCAAGTcccactaggaa-ttgaccccccaagaacacggtttct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29045383 103 -  71996105 GTTTCCATGAGTACAGA-----------ACATG---ACTAATCAGAGAAGACCTCAT--GGACAAATAGA--AAAGCCACCAAGccccactaggaa-ttgaccccccaaggacatggtttct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     241751 103 +    290775 GTTTCCATGAGTACAGA-----------ACATG---ACTAATCAGAGAAGACCTCAT--GGACAAATAGA--AAAGCCACCAAGccccactacgaa-ttgaccccccaagaacatggtttct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2682273 103 -   3067355 GTTTCCATGAGTACAGA-----------ACATG---ACTAATCAGAGAAGACCTCAT--GGACAAATAGA--AAAGCTACCAAGccccagtaggaa-ttgaccccccaaggacatggtttct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      60783 103 +    132061 GTTTCCATGAGTACAGA-----------ACATG---ACTAATCAGAGAAGGCTTCAT--GGAGGAATAGG--AAAGCCACCGAGccccactaggaa-ttgacccctcaaggacatggtttct
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     279668 103 -   1771730 GTTTCCATGAGTACAGA-----------ACATG---ACTAATCAGAGAAGGCTTCAT--GGAGGAATAGG--GAAGCCACCGAGccccactaggaa-ttgacccctcaaggacatggtttct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     350489 103 -    457564 ATTTCCATGAGTACAGA-----------ACATG---ACTAATCAGAGAAGGCTTCAT--GGAGGAATAGG--GAAGCCACCGAGCCCCACTAGGAA-TTGACCCCTCAAGGACATGGTTTCT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     654574 106 +    730504 GTTTTCATGAGTACAGA-----------ACATG---ACTAATCAGGGAAGGCTTCTT--GGAGAAAGAGTGAAGAGCCACCAAGCCCCCCTAGGAAGTTGATCCCTCAAGAATATGGTCTCT
i proCoq1.NW_012152574v1   I 390 I 1037
s otoGar3.GL873550           160471 105 +  18854210 -TTTTCATGAGTATAGA-----------GCATGGTTGCTAAtcagagaaggcttcct--ggaggaagagt---gagccatcaagccacactaggaagatgaCCCTTCAAGGATATGGTCTCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26264794 115 +  26524999 GTTGTCATGAGCACTGACAGGGAACCTCACAGG---GCTGACTAGGGAAGAACTGCTTGGGAGAGAGAGA--GAAGACACCTCACCCCTTTAGACTGTTGGCCCTTCCAG-ACA-GGTCCCC
i canFam3.chr35            I 315 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e saiBol1.JH378388            14000 2744 -    110772 M

a score=222108.000000
s hg38.chr6_GL000254v2_alt   933809 22 +   4827813 agcctttttgttcactgcagat
s panTro5.chr6             29896599 22 + 175400573 agcctttttgttcactgcagat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30130471 22 + 173848474 agcctttttgttcactgcagat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929868 22 +   6154872 agcctttttgttcactgcagat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74646746 22 + 122973662 agcctttttgttcactgcagat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30128205 22 + 172585720 agcctttttgttcactgcagat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792881 22 - 170955103 agcctttttgttcactgcagat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838813 22 -   2996164 agcctttttgttcactgcagat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     588266 22 +    766320 agcctttttgttcactgcagat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29045486 22 -  71996105 agcctttttgttcactgcagat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     241854 22 +    290775 agcctttttgttcactgcagat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2682376 22 -   3067355 agcctttttgttcactgcagat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      60886 22 +    132061 gccctttttgttcactgcagct
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     279771 22 -   1771730 gccctttttgttcactgcaaat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     350592 22 -    457564 GCCCTTTTTGTTCACTGCAGAT
i aotNan1.NW_018509740v1   C 0 I 1732
s otoGar3.GL873550           160576 19 +  18854210 GCCCTTTTTATTAA---CAGAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26264909 22 +  26524999 ATCCTGCTCATTCACTGCACGG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e saiBol1.JH378388            14000 2744 -    110772 M

a score=1662541.000000
s hg38.chr6_GL000254v2_alt   933831 219 +   4827813 tgcccaatgcctaaagataatgg---caacagaagagcacccaaatatttgttagataaatgTTGCAGACACTAGAAGGTGTCAT----TAGG--GCACAGATGGTACCTTCTCTGAGCAAACTTCCTTCACAGCTCCTCCTCCCGAGGCTGTAGGTGACTCTACTCTTGTCACCTGGCACAC---AGAGTTCTATCGTACGATTTAGGAAATTAGACCAGTGTGTGGA---------------C------------------C
s panTro5.chr6             29896621 219 + 175400573 tgcccaatgcctaaagataatgg---caacagaagagcacccaaatatttgttagataaatgTTGCAGACACTAGAAGGTGTCAT----TAGG--GCACAGATGGTACCTTCTCTGAGCAAACTTCCTTCACAGCTCCTCCTCCCGAGGCTGTAGGTGACTCTACTCTTGTCACCTGGCACAC---AGAGTTCTATCATACGATTTATGAAATTAGACCGGTGTGTGGA---------------C------------------C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30130493 221 + 173848474 tgcccaatgcctaaagataatgg---caacagaagagcacccaaatatttgttagataaatgTTGCAGACACTAGAAGGTGTCAT----TAGG--GCACAGATGGTACCTTCTCTGAGCAAACTTCCTTCACAGCTCCTCCTCCCGAGGCTGTAGGTGACTCTACTCTTGTCACCTGGCACAC---AGAGTTCTATCATACGATTTATGAAATTAGACCGGTGTGTGGA---------------C----------------CAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5929890 220 +   6154872 tgcccaatgcctaaagataatgg---caacagaagagcacccaaata-ttgttagataaatgTTGCAGACACTAGAAGGTGTCAT----TAGG--GCACAGATGGTACCTTCTCTGAGCAAACTTCCTTCACAGCTCCTCCTCCCGAGGCTGTAGGTGACTCTACTCTTGTCACCTGGCACAC---AGAGTTCTATCCTACAATTTATGAAATTAGACCAGTGTGTGGA---------------C----------------CAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74646768 237 + 122973662 tgcccaatgcctaaagacaatgg---caacagaagagcatccaaatatttgttagataaatgTTGCAGAAACTAGAAGGTGTCAT----TAGG--GCACAGATGGTACCTTCTCTGAGCAAACTTCCTTCACTGCCCCTCCTCCCGAGCCTGTAGGTGACTCTACTCTTGTCACCTGGCACAC---AGAGTTCTATCCTATGATTTATGAAATTAGACCAGTGTGTGGA---------------CCGCCCCCCCCCCCCACCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30128227 219 + 172585720 cgcccaatgcctaaagacaatgc---caacagaagagcacccaaatatctgttagataaatgTTGCAGAAACTAGAAGGTGTCAG----TAGG--GCACAGATAGTACCTTCTCTGAGCAAACTTCCTTCACAGCCCTTCCTCCCAAGCCTGTAGGTGACTCTACTTTTGTCACCTGGCACAC---AGAGTTCTAACCTACGATTTATAAAATTAGACTAGTTTGTGGA---------------A------------------C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29792903 219 - 170955103 cgcccaatgcctaaagacaatgc---caacagaagagcacccaaatatctgttagataaatgTTGCAGAAACTAGAAGGTGTCAG----TAGG--GCACAGATAGTACCTTCTCTGAGCAAACTTCCTTCACAGCCCTTCCTCCCAAGCCTGTAGGTGACTCTACTTTTGTCACCTGGCACAC---AGAGTTCTAACCTACGATTTATAAAATTAGACTAGTTTGTGGA---------------A------------------C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2838835 219 -   2996164 cgcccaatgcctaaagacaatgc---caacagaagagcacccaaatatctgttagataaatgTTGCAGAAACTAGAAGGTGTCAG----TAGG--GCACAGATAGTACCTTCTCTGAGCAAACTTCCTTCACAGCCCTTCCTCCCAAGCCTGTAGGTGACTCTACTTTTGTCACCTGGCACAC---AGAGTTCTAACCTACGATTTATAAAATTAGACTAGTTTGTGGA---------------A------------------C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     588288 219 +    766320 cgcccaatgcctaaagacaatgc---caacagaagagcacccaaatatctgttagataaatgTTGCAGAAACTAGAAGGTGTCAT----TAGG--GCACAGATGGTACCTTCTCTGAGCAAATTTCCTTCACAGCCCCTCCTCCCGAGCCTGTAGGTGACTCTACTTTTGTCACCTGGCACAC---AGAGTTCTAACCTACCATTTATAAAATTAGACCAATTTGTGGA---------------A------------------C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29045508 227 -  71996105 cgcccaatgcctaaagacaatgc---caacagaagagcacccaaatatctgttagataaatgTTGCAGAAACTAGAAGATGTCAT----TAGG--GCACAGATGGTAACTTCTCTGAGCAAACTTCCTTCACAGCCCCTCCTCCTGAGCCTGTAGGTGACTCTACTTTTGTCACCTGGCACAC---AGAGTTCTAACCTACAATTTATAAAATTAGACCAGTTTGTGGA-------acacgcaca------------------c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     241876 219 +    290775 cgcccaatgcctaaagacaatgc---caacagaagagcacccaaatatctgttagataaatgTTGCAGAAACTAGAAGGTGTCAT----TAGG--GCACAGATGGTACCTTCTCTGAGCAAACTTCCTTCACAGCCCCTCCTCCCGAGCCTGTAGGTGACTCTACTTTTGTCACCTGGCACAC---AGAGTTCTAACCTACCATTTATAAAATTAGACCAATTTGTGGA---------------A------------------C
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2682398 219 -   3067355 cacccaatgcctaaagacaatgc---caacagaagagcacccaaatatctgttagataaatgTTGCAGAAACTAGAAGGTGTCAT----TAGG--GCACAGATGGTACCTTCTCTGAGCAAACTTCCTTCACAGCCCGTCCTCCTGAGCCTGTAGGTGACTATACTTTTGTCACCTGACACAC---AGAGTTCTAACCTACGATTTATAAAATTAGACCAGTTTGTGGA---------------A------------------C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      60908 233 +    132061 tgtccaatgcctaaggaaaatgcctactacagaagagcacccaaatatatgttaaataaatgTTG-ATAAACTATAAGGTTTTAT----AAAG-----CAGATGGTAAATTCTCTGAGCAAACTTCCTTCACTGTCCCTCCTCCTGAGCCTGTAGGTGACTCTACTCTTGTCACCTGACACAC---AGAGTTCTCTCGTATGATTTATGAAATTAGACCAGTGTGTGGACCcacacacacacaca------------------c
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     279793 216 -   1771730 tgtccaatgcctaaggaaaatgcctaccacagaagagcacccaaatatttgttaaataaatgTTGCATAAACTATAAGGTGTTAT----TAGG-----CAGATGGTACCTTCTCTGAGCAAACTTCCTTCACTGTCCCTCCTCCCGAGCCTGTAGGTGACTTGACTCTTGTCACCTG--GCAC---AGAGTTCTCTCCTATGATGTATGAAATTAGACCAGTGTGTGA----------------C------------------C
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           160595 209 +  18854210 TGCCCAATGCATAAGGACAATTCTTATAACAGAAGAGCACACAAATATTTATAAAACAAATGT---AGAAATTATAAGATGGCATGAAGTAGG--GCACATATGGTCCCTACTCTGAGCAACCTTCCT---CAGTCTCTCCT---GAGCC--------ACT---CCCCTGGCACCTAGCGCACATGAGGCCTCTATCCTAGGATTTATGACATAAGACCAGTGTACAGA---------------C------------------T
i otoGar3.GL873550         C 0 I 297
s canFam3.chr35            26264931 169 +  26524999 TGCCCAGTGCGTAAGGATGATGCCTGCAACACGAGGGCACCATGAC-CTTGTTGCATGGATGCAGCAGGAATTCTAGGATGCCAC----AAGGCAGGGCAGA-GGTCGCTGCTCTGAGCAGCCTTCCTGGACGG-----------------------------------------------GC---AGTGCTCCATCC-GCACATTAGGACATCTCATCAGGGTGC--------------------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e saiBol1.JH378388            14000 2744 -    110772 M
e aotNan1.NW_018509740v1     350614 1732 -    457564 I

a score=99078.000000
s hg38.chr6_GL000254v2_alt   934050 13 +   4827813 ACACACACACACA-
s panTro5.chr6             29896840 13 + 175400573 ACACACACACACA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30130714 13 + 173848474 ACACACACACACA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5930110 13 +   6154872 ACACACACACACA-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74647005 13 + 122973662 ACACACACACACG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30128446 13 + 172585720 ATGcacacacaca-
i rheMac8.chr4             C 0 I 12
s macFas5.chr4             29793122 13 - 170955103 ATGcacacacaca-
i macFas5.chr4             C 0 I 12
s macNem1.NW_012011356v1    2839054 13 -   2996164 ATGcacacacaca-
i macNem1.NW_012011356v1   C 0 I 12
s cerAty1.NW_012002711v1     588507 13 +    766320 ACACACACACACA-
i cerAty1.NW_012002711v1   C 0 I 614
s chlSab2.chr17            29045735 13 -  71996105 acacacacacaca-
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012099233v1     242095 13 +    290775 ACACACACACACA-
i manLeu1.NW_012099233v1   C 0 I 2
s colAng1.NW_012115566v1    2682617 13 -   3067355 ACACACACACACA-
i colAng1.NW_012115566v1   C 0 I 2
s calJac3.chrUn_GL286223      61141 13 +    132061 acacacacacaca-
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     280009 13 -   1771730 ACACACACAAACA-
i cebCap1.NW_016107755v1   C 0 C 0
s canFam3.chr35            26265100 12 +  26524999 --AGACAAGCACAG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e saiBol1.JH378388            14000 2744 -    110772 M
e otoGar3.GL873550           160804 297 +  18854210 I
e aotNan1.NW_018509740v1     350614 1732 -    457564 I

a score=26817.000000
s hg38.chr6_GL000254v2_alt   934063 5 +   4827813 TCTTT
s panTro5.chr6             29896853 5 + 175400573 TCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30130727 5 + 173848474 TCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5930123 5 +   6154872 TCTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74647018 5 + 122973662 TCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30128471 5 + 172585720 CCTTG
i rheMac8.chr4             I 12 C 0
s macFas5.chr4             29793147 5 - 170955103 CCTTG
i macFas5.chr4             I 12 C 0
s macNem1.NW_012011356v1    2839079 5 -   2996164 CCTTG
i macNem1.NW_012011356v1   I 12 C 0
s chlSab2.chr17            29045750 5 -  71996105 TCTTG
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012099233v1     242110 5 +    290775 TCTTG
i manLeu1.NW_012099233v1   I 2 C 0
s colAng1.NW_012115566v1    2682632 5 -   3067355 TCTTG
i colAng1.NW_012115566v1   I 2 C 0
s calJac3.chrUn_GL286223      61154 5 +    132061 TCTTT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     280022 5 -   1771730 TTTTT
i cebCap1.NW_016107755v1   C 0 M 1110
s canFam3.chr35            26265112 5 +  26524999 TCTTT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e saiBol1.JH378388            14000 2744 -    110772 M
e otoGar3.GL873550           160804 297 +  18854210 I
e aotNan1.NW_018509740v1     350614 1732 -    457564 I
e cerAty1.NW_012002711v1     588520 614 +    766320 I

a score=1528910.000000
s hg38.chr6_GL000254v2_alt   934068 234 +   4827813 ACACACCCAAAGAGGAGGAATAGTATCTTTGTTTTGGAGGACTTGACTATGAAAGGtcttaactcctttttgtaccatgaat-ctctctggcactccagtgaag-tctaaaggacccctttgcag---aatgtttttaaatatacacataaaatagaacacataggattgc-aaaaacaatcattgtactaaaatacagttatcaaccgataatcacatttgtgatatagtaacataaat
s panTro5.chr6             29896858 234 + 175400573 ACACACCCAAAGAGGAGGAATAGTATCTTTGTTTTGGAGGACTTGACTATGAAAGGtcttaactcctttttgtaccatgaat-ctctctggcactccagtgaag-tctaaaggacccctttgcag---aatgtttttaaatatacacataaaatagaacacataggattgc-aaaaacaatcattgtactaaaatacagttatcaaccgataatcacatttgtgatatagtaacataaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30130732 234 + 173848474 ACACACCCAAAGAGGAGGAATAGTATCTTTGTTTTGGAGGACTTGACTATGAAAGGtcttaactcctttttgtaccatgaat-ctctctggcactccagtgaag-tctaaaggacccctttgcag---aatgtttttaaatatacacataaaatagaacacataggattgc-aaaaacaatcattgtactaaaatacagttatcaaccgataatcacatttgtgatatagtaacataAAT
i panPan2.chr6             C 0 I 193
s gorGor5.CYUI01015250v1    5930128 234 +   6154872 ACACACCCAAAGAGGAGGAATAGTATCTTTGTTTTGGAGGACTTGACTATGAAAGGtcttaactcctttttgtaccatgaat-ctctctggcactccagtgaag-tctaaaggacccctttgcag---aatgtttttaaatatacacataaaatagaacacataggattgc-aaaaacaatcattgtactaaaatacagttatcaaccgataatcacatttgtgatatagtaacataaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74647023 232 + 122973662 ACACACCCAAAGAGGAGGAATAGTATC--TGTTTTGGAGGACTTGACTATGAAAGGtcttaactcctttttgtaccatgaat-ctctctggcactccagtgaag-tctaaaggacccctttgcag---aatgtttttaaatatacacataaaatagaacacataggattgc-aaaaacaatcattgtattgaaatataattatctaccgataatcacatttgtgatatagtaacataaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30128476 237 + 172585720 ACACACCCAAAGAGGAGGAATAGTATCTTTGTTTTGGAGGACTTGACTATTAAAGGtcttaactccttttcgtaccatgaat-ctctctggcactccagtaaag-tctaaaggacccctttgcagaataatgtttttaaatatacacataaaatagaacacataagattgt-aaaaacaatcattgtattgaaatatagctatcaaccgataatcacatttgtgatatagcaacataaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29793152 237 - 170955103 ACACACCCAAAGAGGAGGAATAGTATCTTTGTTTTGGAGGACTTGACTATTAAAGGtcttaactccttttcgtaccatgaat-ctctctggcactccagtaaag-tctaaaggacccctttgcagaataatgtttttaaatatacacataaaatagaacacataagattgt-aaaaacaatcattgtattgaaatatagctatcaaccgataatcacatttgtgatatagcaacataaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2839084 237 -   2996164 ACACACCCAAAGAGGAGGAATAGTATCTTTGTTTTGGAGGACTTGACTATTAAAGGtcttaactccttttcgtaccatgaat-ctctctggcactccagtaaag-tctaaaggacccctttgcagaataatgtttttaaatatacacataaaatagaacacataagattgt-aaaaacaatcattgtattgaaatatagctatcaaccgataatcacatttgtgatatagcaacataaat
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29045755 237 -  71996105 ACACACCCAAAGAGGAGAAATAGTATCTTTGTTTTGGAGGACTTGACTATTAAAAGtcttaactcctttttgtaccatgaat-ctctctggcactccagtaaag-tctaaaggacccctttgcataataatgtttttaaatatacacataaaatagaacacataggattgc-aaaaacaatcattgtattgaaatatagctatcaaccgataatcacatttgtgatatagcaacataaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     242115 237 +    290775 ACGCACCCAAAGAGGAGGAATAGTATCTCTGTTTTGGAGGACTTGACTATTAAAGGtcttaactcctttttgtaccatgaat-ctctctggcactccagtaaag-tctaaaggacccctttgcagaataatgtttttaaatatacacataaaatagaacacataggattgc-aaaaacaatcattgtattgaaatatagctatcaaacgataatcacatttgtgatatagcaacataaat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2682637 235 -   3067355 ACACACCCAAAGAGGAGGAATAGTA--TTTGTTTTGGAGGACGTGACTATTAAAGGtcttaactcctttttgtaccatgaat-ctctctggcactccagtaaag-tctaaaggacccctttgcagaataatgtttttaaatatacacataaaacagaacacataggattgc-aaaaacaatcattgtattgaaatatagctatcaaccaataatcacatttgtgatacagcaacataaat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      61159 236 +    132061 ACACACCCAGAGAGGAGGAATAGTATCTTCACTTTGTAGGACTTGACTATGAAAGGActtaactc--ttttgtaccatgaat-ctctctggcactctagtgaag-tctaatggacccctttccagaataatgttttaaaatatacacataaactagaacatgtaggattgcaaaaaacaatcattgtattgaaatatagttattaacagataatcacatttgtggcacagtaacataaat
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           161101 233 +  18854210 ATACACCCAAAGAGAAAGAATAGGATCTTTGTTTTGCAGGATTTGAATAACAAAAGttttaattc-tttttacaccaaaaatattttttggcagtctgatgaag-cctaaaagattccttccctgaataattattttaaatgtagac--aaaatataaggaatgagattat-gaagaaaatcattatccatacataaacttgtcaacatacaagcaaatttgtgatacagtgac--aaat
i otoGar3.GL873550         I 297 C 0
s canFam3.chr35            26265117 235 +  26524999 GCAACCTACAAAGGGAGGAACCAGAGCTTTGTTTTGTAGGATTCTAATAGCAAAGGtcttatgtc-tttctgcatcgtgaat-ctcctgggcgtcctgctgtagctctaatggaacctttcccagattaaaatttttaaaccatcacataaaacttaacacataaacttgc-aaagaaaaccattaaattgaaacacaggtatcagaatataaacccatctgtaacagagtaac--aaat
i canFam3.chr35            C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e saiBol1.JH378388            14000 2744 -    110772 M
e aotNan1.NW_018509740v1     350614 1732 -    457564 I
e cebCap1.NW_016107755v1     280027 1110 -   1771730 M
e cerAty1.NW_012002711v1     588520 614 +    766320 I

a score=9739.000000
s hg38.chr6_GL000254v2_alt   934302  4 +   4827813 g--------------------ttt
s panTro5.chr6             29897092  4 + 175400573 g--------------------ttt
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5930362  4 +   6154872 g--------------------ttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74647255  4 + 122973662 g--------------------ttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30128713  4 + 172585720 g--------------------ttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29793389  4 - 170955103 g--------------------ttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2839321  4 -   2996164 g--------------------ttt
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29045992 24 -  71996105 gtttctttctttctttctttcttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     242352  4 +    290775 g--------------------ctt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2682872  4 -   3067355 g--------------------ttt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      61395  4 +    132061 --------------------tttt
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           161334  4 +  18854210 g--------------------ttt
i otoGar3.GL873550         C 0 I 31
s canFam3.chr35            26265352  4 +  26524999 g--------------------ttt
i canFam3.chr35            C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e saiBol1.JH378388            14000 2744 -    110772 M
e aotNan1.NW_018509740v1     350614 1732 -    457564 I
e cebCap1.NW_016107755v1     280027 1110 -   1771730 M
e cerAty1.NW_012002711v1     588520 614 +    766320 I
e panPan2.chr6             30130966 193 + 173848474 I

a score=5159.000000
s hg38.chr6_GL000254v2_alt   934306 1 +   4827813 c
s panTro5.chr6             29897096 1 + 175400573 c
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5930366 1 +   6154872 c
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74647259 1 + 122973662 c
i nomLeu3.chr1a            C 0 I 298
s rheMac8.chr4             30128717 1 + 172585720 c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29793393 1 - 170955103 c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2839325 1 -   2996164 c
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29046016 1 -  71996105 c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     242356 1 +    290775 c
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2682876 1 -   3067355 c
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      61399 1 +    132061 t
i calJac3.chrUn_GL286223   C 0 C 0
s canFam3.chr35            26265356 1 +  26524999 c
i canFam3.chr35            C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e saiBol1.JH378388            14000 2744 -    110772 M
e otoGar3.GL873550           161338 31 +  18854210 I
e aotNan1.NW_018509740v1     350614 1732 -    457564 I
e cebCap1.NW_016107755v1     280027 1110 -   1771730 M
e cerAty1.NW_012002711v1     588520 614 +    766320 I
e panPan2.chr6             30130966 193 + 173848474 I

a score=16676.000000
s hg38.chr6_GL000254v2_alt   934307 3 +   4827813 ttt
s panTro5.chr6             29897097 3 + 175400573 ttt
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5930367 3 +   6154872 ttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74647558 3 + 122973662 ttt
i nomLeu3.chr1a            I 298 C 0
s rheMac8.chr4             30128718 3 + 172585720 ttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29793394 3 - 170955103 ttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2839326 3 -   2996164 ttt
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29046017 3 -  71996105 ttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     242357 3 +    290775 ttt
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2682877 3 -   3067355 ttt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      61400 3 +    132061 tct
i calJac3.chrUn_GL286223   C 0 C 0
s canFam3.chr35            26265357 3 +  26524999 ttt
i canFam3.chr35            C 0 I 166
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e saiBol1.JH378388            14000 2744 -    110772 M
e otoGar3.GL873550           161338 31 +  18854210 I
e aotNan1.NW_018509740v1     350614 1732 -    457564 I
e cebCap1.NW_016107755v1     280027 1110 -   1771730 M
e cerAty1.NW_012002711v1     588520 614 +    766320 I
e panPan2.chr6             30130966 193 + 173848474 I

a score=15275.000000
s hg38.chr6_GL000254v2_alt   934310 4 +   4827813 tttt
s panTro5.chr6             29897100 4 + 175400573 tttt
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5930370 4 +   6154872 tctt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74647561 4 + 122973662 tttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30128721 4 + 172585720 cttt
i rheMac8.chr4             C 0 I 21
s macFas5.chr4             29793397 4 - 170955103 cttt
i macFas5.chr4             C 0 I 21
s macNem1.NW_012011356v1    2839329 4 -   2996164 cttt
i macNem1.NW_012011356v1   C 0 I 19
s chlSab2.chr17            29046020 4 -  71996105 cttt
i chlSab2.chr17            C 0 I 20
s manLeu1.NW_012099233v1     242360 4 +    290775 cttt
i manLeu1.NW_012099233v1   C 0 I 19
s colAng1.NW_012115566v1    2682880 4 -   3067355 cttt
i colAng1.NW_012115566v1   C 0 I 1430
s calJac3.chrUn_GL286223      61403 4 +    132061 tttt
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e canFam3.chr35            26265360 166 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M
e otoGar3.GL873550           161338 31 +  18854210 I
e aotNan1.NW_018509740v1     350614 1732 -    457564 I
e cebCap1.NW_016107755v1     280027 1110 -   1771730 M
e cerAty1.NW_012002711v1     588520 614 +    766320 I
e panPan2.chr6             30130966 193 + 173848474 I

a score=952305.000000
s hg38.chr6_GL000254v2_alt   934314 283 +   4827813 -ttttttttgaggcagagttttgctcttgtcacccaggctggagtgcaatggcgcgatctaggctcactg-aaacctctgcctcccgggttcaagcgatt-------ctcagc--ctcctgagtagctgggattacaggtgcccgccaccacacccagctaatttttgtatttttagtagagactaggtttcaccaggttggccaggctggcctcgaactcctgacctcaggtgatcc---acctgccttggcctcccaaagtgctgggattacgggcatgagccaccgtgcccggc
s panTro5.chr6             29897104 282 + 175400573 -ttttttt-gaggcagagttttgctcttgtcgcccaggctggagtgcaatggcgctatctaggctcactg-aaacctctgcctcccgggttcaagcgatt-------ctcagc--ctcccgagtagctgggattacaggtgcccgccaccacacccagctaatttttgtatttttagtagagactaggtttcaccaggttggctaggctggcctcgaactcctgacctcaggtgatcc---acctgccttggcctcccaaagtgctgggattacaggcatgagccaccgtgcccagc
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5930374 282 +   6154872 -ttttttt-gaggcagagttttgctcttgtcgcccaggctggagtgcaatggcgcgatctaggctcactg-aaacctctgcctcccgggttcaagcgatt-------ctcagc--ctcccgagtagctgggattacaggtgcccgccaccacacccagctaatttttgtatttttagtagagactaggtttcaccaggttggccaggctggcctcgaactcctgacctcaggtgatcc---acccgccttggcctcccaaagtgctgggattacaggcatgagccaccgtgcccggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74647565 277 + 122973662 -ttttttt-gaggcagaattttgctcttgtcacccaggctggactgcaatggcgcgatctacgctcagtg-aaacctctgcctcctgggttcaagcaatt-------ctcagctactcccgagtagctgggattacaggtgcccgccaccacactcagctaatttttgtatttttagtagagactaggtttcaccaggttggccaggctggcctcgacctcctgacctc-------cc---acccaccttggcctcccaaagtgctgggattacaggcagaagccaccgtgcccggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30128746 282 + 172585720 -ttttttt-gaagcgaagttttgctcttgtcgcccaggctggagtgcaatggcacgatctaggcgctctg-aaacctctgcctcctgggttcaagcgatt-------ctcagc--ctcccgagtagctgggattacaggtgcccgccaccacacccagataatttttgtatttttagtagagactaggtttcaccaggttggccaggctggcctcaaactcctgacttcaggtgatct---acccaccttggcctcccaaagtgctgggattacaggcatgagccaccatgcccaat
i rheMac8.chr4             I 21 C 0
s macFas5.chr4             29793422 282 - 170955103 -ttttttt-gaagcgaagttttgctcttgtcgcccaggctggagtgcaatggcacgatctaggcgctctg-aaacctctgcctcctgggttcaagcgatt-------ctcagc--ctcccgagtagctgggattacaggtgcccgccaccacacccagataatttttgtatttttagtagagactaggtttcaccaggttggccaggctggcctcaaactcctgacttcaggtgatct---atccgccttggcctcccaaagtgctgggattacaggcatgagccaccatgcccaat
i macFas5.chr4             I 21 C 0
s macNem1.NW_012011356v1    2839352 269 -   2996164 -ttttttt-gaagcgaagttttg-tcttgtcgcccaggctggagtgcaat-gcacgatctaggcgctctg-aaacctctg-ctcctgggttcaagcgatt-------ctcagc--ctc----gtag-tgggattacaggtgcccgccaccac-cccagataa-ttttgta-ttttagtagagactaggtttcaccaggtt-gccaggctggcctcaaactcctgacttcaggttattt---acccgccttggcctcccaaagtgctgggattacaggcatgag-caccatgcccAAT
i macNem1.NW_012011356v1   I 19 C 0
s chlSab2.chr17            29046044 280 -  71996105 -ttttttt-gaagcaaagttttgctcttgttgcccaggctgcagtgcaatggtgcgatctaggctcactg-aaacctctgcctcccgggttcaagcgatt-------ctcagc--ctcccgagtagctgggattacaggcatgtgccaccatgccaggctaatttttatactcttagtagagacagggtttcaccatgttggcctggctgctcttgaactcttggcctc--gtgatct---ccccgcctcagactcccaaagtgctgggattacaagtgtgagccaccatgcctggc
i chlSab2.chr17            I 20 I 36
s manLeu1.NW_012099233v1     242383 285 +    290775 -ttttttt-gaagagaagttttgctcttgtcgcccaggctggagtgcaatggcgcgatctaggctcactg-aaacctctgcctcctgggttcaagcaatt-------ctcagc--ctcccgagtagctgggattacaggtgcccgccaccacacccagataatttttgtatttttagtagagactagatttcaccaggttggccaggctggcctcaaactcctgacttccggtgatctaccacccgccttggcctcccaaagcgctgggattacaggcatgagccaccatgcccaac
i manLeu1.NW_012099233v1   I 19 C 0
s calJac3.chrUn_GL286223      61407 290 +    132061 tttttttt-gaggcagagttttactcttgttatccaggctggagtgcaatggcatgatctcggctcacagcaaacctctgcctcccaggtttaaacgattctcctgcctcaac--ctcccaagtagctggaactacaggtgtatgccaccacgcccagctaatttttgtaatttttgtagaggtggggtttcaccatgttggccaggctggttttgaac-cccgacctcaggtgatcc---acccaccttgacctcccaaagtgctggaattacaggtgtgagccaccgtgcccagc
i calJac3.chrUn_GL286223   C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e canFam3.chr35            26265360 166 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M
e otoGar3.GL873550           161338  31 +  18854210 I
e aotNan1.NW_018509740v1     350614 1732 -    457564 I
e cebCap1.NW_016107755v1     280027 1110 -   1771730 M
e colAng1.NW_012115566v1    2682884 1430 -   3067355 I
e cerAty1.NW_012002711v1     588520 614 +    766320 I
e panPan2.chr6             30130966 193 + 173848474 I

a score=3600.000000
s hg38.chr6_GL000254v2_alt   934597 1 +   4827813 c
s panTro5.chr6             29897386 1 + 175400573 c
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5930656 1 +   6154872 c
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74647842 1 + 122973662 c
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30129028 1 + 172585720 c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29793704 1 - 170955103 c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2839621 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012099233v1     242668 1 +    290775 c
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      61697 1 +    132061 c
i calJac3.chrUn_GL286223   C 0 I 136
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e canFam3.chr35            26265360 166 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M
e otoGar3.GL873550           161338 31 +  18854210 I
e aotNan1.NW_018509740v1     350614 1732 -    457564 I
e cebCap1.NW_016107755v1     280027 1110 -   1771730 M
e colAng1.NW_012115566v1    2682884 1430 -   3067355 I
e chlSab2.chr17            29046324 36 -  71996105 I
e cerAty1.NW_012002711v1     588520 614 +    766320 I
e panPan2.chr6             30130966 193 + 173848474 I

a score=167424.000000
s hg38.chr6_GL000254v2_alt   934598 80 +   4827813 ataaatatttctttagccaaagtaatacattaagtaatgtagcagcaagtctaataacctgtaatttctttctttct---------ttc-----------
s panTro5.chr6             29897387 80 + 175400573 ataaatatttctttagccaaagtaatacattaagtaatgtagcagcaagtctaataacctgtaatttctttctttct---------ttc-----------
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5930657 76 +   6154872 ataaatatttctttagccaaagtaatacattaagtaatgtagcagcaagtctaataacctgtaa----tttctttct---------ttc-----------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74647843 89 + 122973662 gtaaatgtttctttagcaaaagtaatacattaagtaatgtagcagcaagtctaataacctgtaatttctttctttctttcttcttcttc-----------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30129029 91 + 172585720 ataaatgtttctttagcaaaagtaatacattaagtaatgtagcagcaagtctagtaacctgtaatttctttctttct---------ttcttttttctttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29793705 88 - 170955103 ataaatgtttctttagcaaaagtaatacattaagtaatgtagcagcaagtctagtaacctgtaatttctttctttct---------ttc---tttctttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2839622 80 -   2996164 ATAAATGTTT-TTTAGCAAAAGTAATACATTAAGTAATGTAGCAGC-AGTCTAGTAA-CTGTAATTTCTTTCtttct---------ttc--------ttt
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012099233v1     242669 81 +    290775 ataaatgtttctttagcaaaagtaatacattaggtaatgtagcagcaagtctagtaacctgtaatttctttctttct---------ttc----------t
i manLeu1.NW_012099233v1   C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e canFam3.chr35            26265360 166 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M
e otoGar3.GL873550           161338 31 +  18854210 I
e aotNan1.NW_018509740v1     350614 1732 -    457564 I
e cebCap1.NW_016107755v1     280027 1110 -   1771730 M
e calJac3.chrUn_GL286223      61698 136 +    132061 I
e colAng1.NW_012115566v1    2682884 1430 -   3067355 I
e chlSab2.chr17            29046324 36 -  71996105 I
e cerAty1.NW_012002711v1     588520 614 +    766320 I
e panPan2.chr6             30130966 193 + 173848474 I

a score=122865.000000
s hg38.chr6_GL000254v2_alt   934678 56 +   4827813 tttctttctttttttttgagatgaag-ttttttt----------gagatggagtgcaatggcacaat
s panTro5.chr6             29897467 40 + 175400573 tttctttttttttttttgagatg---------------------------gagtgcaatggcacaat
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5930733 40 +   6154872 tttttttttttttttttgagatg---------------------------gagtgcaatggcacaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74647932 66 + 122973662 ttttttttttttttttggagatggag-ttttgctcttgtaacccaggctagagtgcaatggcacgat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30129120 66 + 172585720 tttttttttttttttttgagatggag-ttttgttcttgtagcccaggctggagtgcaatggcacgat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29793793 66 - 170955103 tttttttttttttttttgagatggag-ttttgttcttgtagcccaggctggagtgcaatggcacgat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2839702 67 -   2996164 tttttttttttttttttgagatggagtttttgttcttgtagcccaggctggagtgcaatggcacgat
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012099233v1     242750 66 +    290775 ttcttttttttttctttgagatggag-ttttgctcttgtagcccaggctggagtgcaatggcacgat
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      61834 65 +    132061 tgttactctttttttttgag-tggag-tctcactcttgtggtccaggctggagtgcaatggcatgat
i calJac3.chrUn_GL286223   I 136 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e canFam3.chr35            26265360 166 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M
e otoGar3.GL873550           161338 31 +  18854210 I
e aotNan1.NW_018509740v1     350614 1732 -    457564 I
e cebCap1.NW_016107755v1     280027 1110 -   1771730 M
e colAng1.NW_012115566v1    2682884 1430 -   3067355 I
e chlSab2.chr17            29046324 36 -  71996105 I
e cerAty1.NW_012002711v1     588520 614 +    766320 I
e panPan2.chr6             30130966 193 + 173848474 I

a score=775332.000000
s hg38.chr6_GL000254v2_alt   934734 223 +   4827813 c-tcggctcactgcaacctccacctcctgggtt-caagcgattct-cctgcctcagcctcccaagttgctggaactacaggcgcatgccaccatgcccagctaattttt--gtatttttagtagagacggggtttcaccatgttggccaggctggtcttgaacccctgacctcaggtgatctgcctgccttggccttccaaagtgctgggattacaggcatgagccac
s panTro5.chr6             29897507 223 + 175400573 c-tcggctcactgcaacctctgcctcctgggtt-caagcgattct-cctgcctcagcctcccaagttgctggaactacaggcgcatgccaccatgccctgctaattttt--gtatttttagtagagacggggtttcaccatgttggccaggctggtcttgaacccctgacctcaggtgatctgcctgccttggccttccaaagtgctgggattacaggcatgagccac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30131159 224 + 173848474 c-tcggctcactgcaacctccgcctcctgggttccaagcttttctccctgcctcag-ctcccaagttgctggaactacaggcgcatgccaccatgccctgctaattttt--gtatttttagtagagacggggtttcaccatgttggccaggctggtcttgaacccctgacctcaggtgatctgcctgccttggccttccaaagtgctgggattacaggcatgagccac
i panPan2.chr6             I 193 C 0
s gorGor5.CYUI01015250v1    5930773 223 +   6154872 c-tcggctcactgcaacctccgcctcctgggtt-caagcgattct-cctgcctcagcctcccaagttgctggaactacaggtgcatgccaccatgcccagctaattttt--gtatttttagtagagacggggtttcaccatgttggccaggctggtcttgaacccctgacctcaggtgatctgcctgccttggccttccaaagtgctgggattacaggcatgagccac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74647998 223 + 122973662 c-tcggctcacggcaacctctgcctcctgggtt-caagcgattct-cctgcctcaaccttccaagttgctggaactacaggcgcatgccaccacgcccagctaattttt--gtatttttagtagagatggggtttcaccatgttggccaggcttgtcttgaacccctgacctcaggtgatctgcctgcctcggccttccaaagtgctgggattacaggcatgagccac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30129186 209 + 172585720 c-tcagctcactgcaacctctgcctcctgggtt-caagcaattct-cctgcctcaacctcccaagttgctggaactacag--------------gcccagctaattttt--gtatttttagtagagacggggtcttaccatgttggccaggttggcattgaacccctgacctcaggtgatctgcctgcctcagccttctaaagtgctgggattacaggtgtgagccac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29793859 209 - 170955103 c-tcagctcactgcaacctctgcctcctgggtt-caagcaattct-cctgcctcaacctcccaagttgctggaactacag--------------gcccagctaattttt--gtatttttagtagagacggggtcttaccatgttggccaggttggcattgaacccctgacctcaggtgatctgcctgcctcagccttctaaagtgctgggattacaggtgtgagccac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2839769 210 -   2996164 cttcagctcactgcaacctctgcctcctgggtt-caagcaattct-cctgcctcaacctcccaagttgctggaactacag--------------gcccagctaattttt--gtatttttagtagagacggggtcttaccatgttggccaggttggcattgaacccctgacctcaggtgatctgcctgcctcagccttctaaagtgctgggattacaggtgtgagccac
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012099233v1     242816 209 +    290775 c-tcagctcattgcaacctctgcctcctgggtt-caagcaattct-cctgcctcaacctcccaagttgctggaactacag--------------gcccagctcattttt--gtatttttagtagagacagggtcttaccatgttggccaggttggcattgaacccctgacctcaggtgatctgcctgcctcagccttccaaagtgctgggattacaggtgtgagccac
i manLeu1.NW_012099233v1   C 0 C 0
s calJac3.chrUn_GL286223      61899 222 +    132061 c-tcagctcactgcaacctctgcctcccaggtt-caagcaattat--ctgcctcagcctcctgagtagctgggattacaggcgcccaccaccatgaccagctaattttttcatatttttagtagagatggggttttgtcatcttggccaggctggtcttgaattcctgacctta--tgatccacccatcttggcctcccaaagtgctgggattacaggtgtgagccac
i calJac3.chrUn_GL286223   C 0 I 43
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e canFam3.chr35            26265360 166 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M
e otoGar3.GL873550           161338  31 +  18854210 I
e aotNan1.NW_018509740v1     350614 1732 -    457564 I
e cebCap1.NW_016107755v1     280027 1110 -   1771730 M
e colAng1.NW_012115566v1    2682884 1430 -   3067355 I
e chlSab2.chr17            29046324  36 -  71996105 I
e cerAty1.NW_012002711v1     588520 614 +    766320 I

a score=17676.000000
s hg38.chr6_GL000254v2_alt   934957 5 +   4827813 caggc
s panTro5.chr6             29897730 5 + 175400573 caggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30131383 5 + 173848474 caggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5930996 5 +   6154872 caggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74648221 5 + 122973662 caggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30129395 5 + 172585720 caggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29794068 5 - 170955103 caggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2839979 5 -   2996164 caggc
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012099233v1     243025 5 +    290775 caggc
i manLeu1.NW_012099233v1   C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e canFam3.chr35            26265360 166 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M
e otoGar3.GL873550           161338 31 +  18854210 I
e aotNan1.NW_018509740v1     350614 1732 -    457564 I
e cebCap1.NW_016107755v1     280027 1110 -   1771730 M
e calJac3.chrUn_GL286223      62121 43 +    132061 I
e colAng1.NW_012115566v1    2682884 1430 -   3067355 I
e chlSab2.chr17            29046324 36 -  71996105 I
e cerAty1.NW_012002711v1     588520 614 +    766320 I

a score=215191.000000
s hg38.chr6_GL000254v2_alt   934962 59 +   4827813 ccagcccaataacctttaatttcaacatactaataaacataaacagtatttcaagattt
s panTro5.chr6             29897735 59 + 175400573 ccagcccaataacctttaatttcaaaatactaataaacataaacagtatttcaagattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30131388 59 + 173848474 ccagccCaataacctttaatttcaaaatactaataaacataaacagtatttcaagattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5931001 59 +   6154872 ccagcccaataacctttaatttcaaaatactaataaacataaacagtatttcaagattt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74648226 59 + 122973662 ccagaccaataacctttaatttcaaaatactaataaacataaacagtatttcaagattt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30129400 59 + 172585720 ctggcccaataacctttaatttcaaaatactaataaacataaacagtatttcaagattt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29794073 59 - 170955103 ctggcccaataacctttaatttcaaaatactaataaacataaacagtatttcaagattt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2839984 59 -   2996164 ctggccCaataacctttaatttcaaaatactaataaacataaacagtatttcaagattt
i macNem1.NW_012011356v1   C 0 C 0
s manLeu1.NW_012099233v1     243030 59 +    290775 ctggccCAATAACCTTTAATTTCAAAATACTAATAAACATAAACAGTATTTCAAGATTT
i manLeu1.NW_012099233v1   C 0 I 685
s otoGar3.GL873550           161369 53 +  18854210 caagtctaataactcataatttcaaagtattg------ataaacagtatttcaaaattt
i otoGar3.GL873550         I 31 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e canFam3.chr35            26265360 166 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M
e aotNan1.NW_018509740v1     350614 1732 -    457564 I
e cebCap1.NW_016107755v1     280027 1110 -   1771730 M
e calJac3.chrUn_GL286223      62121 43 +    132061 I
e colAng1.NW_012115566v1    2682884 1430 -   3067355 I
e chlSab2.chr17            29046324 36 -  71996105 I
e cerAty1.NW_012002711v1     588520 614 +    766320 I

a score=312993.000000
s hg38.chr6_GL000254v2_alt   935021 151 +   4827813 ctgcaataactctaatgggaatgaaaacatctgtggcttccattggtaattaagtcacaggtactgctcatattgtggttagttgTAAAA-----------------------------------TGTTTTGGTTTGTTTTGTTTTTTCCAAGACTTGGGGGAATGGGTGTTGGTGGGATCAACAA
s panTro5.chr6             29897794 151 + 175400573 ctgcaataactctaatgggaatgaaaacatctctggcttccattggtaattaagtcacaggtactgctcatattgtggttagttgTAAAA-----------------------------------TGTTTTGGTTTGTTTTGTTTTTTCCAAGACTTGGGGGAATGGGTGTTGGTGGGATCAACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30131447 151 + 173848474 ctgcaataactctaatgggaatgaaaacatctctggcttccattggtaattaagtcacaggtactgctcatattgtggttagttgTAAAA-----------------------------------TGTTTTGGTTTGTTTTGTTTTTTCCAAGACTTGGGGGAATGGGTGTTGGTGGGATCAACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5931060 151 +   6154872 ctgcaataactctaatgggaatgaaaacatctatggcttccattggtaattaagtcacaggtactgctcatattgtggttagttgTAAAA-----------------------------------TGTTTTGGTTTGTTTTGTTTTTTCCAAGACTTGGGGGAATGGGTGTTGGTGGGATCAACAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74648285 186 + 122973662 ctgcaataactctaatgggaatgaaaacatctatggcttccattggtaattaagtcacaggtactgctcatattgtggttagttgtaacatgttttgttttgttttgttttgttttgttttgttttgttttgttttgttttgttttttccaagacttgggggaatgggtgttggtgggatcaacaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30129459 123 + 172585720 ctgcaataactctaatgggaatgaaaacatatatggcttccattggtaattaagtcacaggtactgctgatattgtggttagttgtaaca-----------------------------------tgttttgctttgttttgttttttccaaga---------------------gaga-------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29794132 123 - 170955103 ctgcaataactctaatgggaatgaaaacatatatggcttccattggtaattaagtcacaggtactgctgatattgtggttagttgTAACA-----------------------------------TGttttgctttgttttgttttttccaaga---------------------gaga-------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2840043 123 -   2996164 ctgcaataactctaatgggaatgaaaacatatatggcttccattggtaattaagtcacaggtactgctgatattgtggttagttgtaaca-----------------------------------tgttttgctttgttttgttttttccaaga---------------------gaga-------
i macNem1.NW_012011356v1   C 0 C 0
s otoGar3.GL873550           161422  83 +  18854210 ctgcaacaat--------------------------catccattggtgattaagtcacaagtaccactgatactgtggttagt------------------------------------------tgctt---tttttttttttccccccgaga--------------------------------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e canFam3.chr35            26265360 166 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M
e aotNan1.NW_018509740v1     350614 1732 -    457564 I
e cebCap1.NW_016107755v1     280027 1110 -   1771730 M
e calJac3.chrUn_GL286223      62121  43 +    132061 I
e colAng1.NW_012115566v1    2682884 1430 -   3067355 I
e manLeu1.NW_012099233v1     243089 685 +    290775 I
e chlSab2.chr17            29046324  36 -  71996105 I
e cerAty1.NW_012002711v1     588520 614 +    766320 I

a score=2661.000000
s hg38.chr6_GL000254v2_alt   935172 2 +   4827813 ga
s panTro5.chr6             29897945 2 + 175400573 ga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30131598 2 + 173848474 ga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5931211 2 +   6154872 ga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74648471 2 + 122973662 ga
i nomLeu3.chr1a            C 0 C 0
s calJac3.chrUn_GL286223      62164 2 +    132061 ga
i calJac3.chrUn_GL286223   I 43 C 0
s otoGar3.GL873550           161505 2 +  18854210 ca
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e canFam3.chr35            26265360 166 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M
e aotNan1.NW_018509740v1     350614 1732 -    457564 I
e cebCap1.NW_016107755v1     280027 1110 -   1771730 M
e colAng1.NW_012115566v1    2682884 1430 -   3067355 I
e manLeu1.NW_012099233v1     243089 685 +    290775 I
e chlSab2.chr17            29046324 36 -  71996105 I
e cerAty1.NW_012002711v1     588520 614 +    766320 I
e macNem1.NW_012011356v1    2840166 0 -   2996164 C
e macFas5.chr4             29794255 0 - 170955103 C
e rheMac8.chr4             30129582 0 + 172585720 C

a score=71341.000000
s hg38.chr6_GL000254v2_alt   935174 14 +   4827813 gtcttgctc-tgtgg
s panTro5.chr6             29897947 14 + 175400573 gtcttgctc-tgtgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30131600 14 + 173848474 gtcttgctc-tgtgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5931213 14 +   6154872 gtcttgctc-tgtgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74648473 14 + 122973662 gtcttgctc-tgtgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30129582 14 + 172585720 gtcttgctc-tgtct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29794255 14 - 170955103 gtcttgctc-tgtct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2840166 14 -   2996164 gtcttgctc-tgtct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     589134 14 +    766320 gtctcgctc-tgtcg
i cerAty1.NW_012002711v1   I 614 C 0
s chlSab2.chr17            29046360 14 -  71996105 gtctcgctc-tgttg
i chlSab2.chr17            I 36 C 0
s colAng1.NW_012115566v1    2684314 14 -   3067355 gtctcgctc-tgttg
i colAng1.NW_012115566v1   I 1430 C 0
s calJac3.chrUn_GL286223      62166 15 +    132061 gttttgctcttgtta
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           161507 14 +  18854210 gtctcactt-tgtca
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e canFam3.chr35            26265360 166 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M
e aotNan1.NW_018509740v1     350614 1732 -    457564 I
e cebCap1.NW_016107755v1     280027 1110 -   1771730 M
e manLeu1.NW_012099233v1     243089 685 +    290775 I

a score=775848.000000
s hg38.chr6_GL000254v2_alt   935188 126 +   4827813 cccaggctggagtgcaggggcaggatcttggctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcctgagtagctggcattacaggcatgtgccaccacgcccagcta
s panTro5.chr6             29897961 126 + 175400573 cccaggctggagtgcaggggcaggatcttggctcactgcaacctccgcctcccaggttcaatcgattctcctgcctcagcctcctgagtagctggcattacaggcatgtgccaccacgcccagcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30131614 126 + 173848474 cccaggctggagtgcaggggcaggatcttggctcactgcaacctccgcctcccaggttcaatcgattctcctgcctcagcctcctgagtagctggcattacaggcatgtgccaccacgcccagcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5931227 126 +   6154872 cccaggctggagtgcaggggcaggatcttggctcattgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcctgagtagctggcattacaggcacgtgccaccacgcccagcta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74648487 126 + 122973662 cccaggctggagtgcaggggcaggatcttggctcaccgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctggcattgcaggcatgcgccatcacacccagcta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30129596 126 + 172585720 cccacgctggagtgcagtggcaggatctcggctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcatgcgccaccatgccaggcta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29794269 126 - 170955103 cccacgctggagtgcagtggcaggatctcggctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcatgcgccaccatgccaggcta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2840180 126 -   2996164 cccacgctggagtgcagtggcaggatctcggctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcatgcgccaccatgccaggcta
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     589148 125 +    766320 cccaggttggagtgcagcggcacaaacttggctcactgcaagttccacctccc-ggttcacaccattctcttgcctcagcctccagagtacctgagactacaggtgcccgctaccatgcccggcta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29046374 125 -  71996105 cccaggttggagtgcagcagcacgagcttggctcactgcaagttccgcctccc-ggttcacaccattctcctgcctcagcctccagagtacctgagactacagatgcccgctaccatgcctggcta
i chlSab2.chr17            C 0 I 7
s colAng1.NW_012115566v1    2684328 125 -   3067355 cccaggttggagtgcagcggcatgaacttggctcacggcaagttctgcctccc-gattcacaccattctcctgcctcagcctccagagtacctgagactacaggtgcccgctactatgcccggcta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      62181 126 +    132061 cccaggttggagtgcaatggcacgatctcggctcaccacaacctccaccttctgggttcaagcaattctcctgcctcagcctcctgagtacctgggactacaggtgtgcaccaccatgcccagcta
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     281178 125 -   1771730 cccaggctggagtgcaatggcatgatctcagctcactgcagcctctgcctcccaggttcaagcaattat-ctgcctcagcctcctgagtagctggggttacaggcgcccaccaccatgaccagcta
i cebCap1.NW_016107755v1   M 1110 C 0
s otoGar3.GL873550           161521 118 +  18854210 cacttggtagagtgccgttgc---atcatagctcacagcagcctataactcttgggctcaagcaatccttccgcctcagcctcctgagtagctgagactacagg----tgcca-catgcctggcta
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e canFam3.chr35            26265360 166 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M
e aotNan1.NW_018509740v1     350614 1732 -    457564 I
e manLeu1.NW_012099233v1     243089 685 +    290775 I

a score=24076.000000
s hg38.chr6_GL000254v2_alt   935314  9 +   4827813 -----attttt--ac--a
s panTro5.chr6             29898087  9 + 175400573 -----attttt--ac--a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30131740  9 + 173848474 -----attttt--ac--a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5931353  8 +   6154872 -----a-tttt--gc--a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74648613  9 + 122973662 -----attttt--ac--a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30129722  9 + 172585720 -----attttt--at--a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29794395  9 - 170955103 -----attttt--at--a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2840306  9 -   2996164 -----attttt--at--a
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     589273 11 +    766320 -----attttt--tctat
i cerAty1.NW_012002711v1   C 0 C 0
s colAng1.NW_012115566v1    2684453  9 -   3067355 -----attttt--tc--t
i colAng1.NW_012115566v1   C 0 I 2
s calJac3.chrUn_GL286223      62307  9 +    132061 -----attttt--gt--a
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     281303 11 -   1771730 -----attttttcat--a
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           161639 14 +  18854210 gtttttttttt--ct--a
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e canFam3.chr35            26265360 166 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M
e aotNan1.NW_018509740v1     350614 1732 -    457564 I
e manLeu1.NW_012099233v1     243089 685 +    290775 I
e chlSab2.chr17            29046499  7 -  71996105 I

a score=904975.000000
s hg38.chr6_GL000254v2_alt   935323 122 +   4827813 tttttagtagagatggggtttcaccatgttggcctggctggtcttgaactcttggcctc--atgatccacccgtctcggactcccagagtgttgggat---tacaggcatgagccaccacacctgg-c
s panTro5.chr6             29898096 122 + 175400573 ttcttagtagagatggggtttcaccgtgttggcctggctggtcttgaactcttggcctc--atgatccacccgtcttggactcccaaagtgttgggat---tacaggcatgagccaccacacctgg-c
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30131749 122 + 173848474 ttcttagtagagatggggtttcaccgtgttggcctggctggtcttgaactcttggcctc--atgatccacccgtcttggactcccaaagtgttgggat---tacaggcatgagccaccacacctgg-c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5931361 122 +   6154872 ttcttagtagagatggggtttcaccatgctggcctggctggtcttgaactcttggcctc--atgatccacccgtctcagactcccaaagtgttgggat---tacaggcatgagccaccacacctgg-c
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74648622 120 + 122973662 --cttagtagatacggggtttcaccatgttggcctggctggtcttgaactcttggcctc--gtgatccgcccaccccagactcccaaagtgttgggat---tacaggcatgagccaccatgcctgg-c
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30129731 122 + 172585720 ctcttagtagagacagggtttcaccatgttggcctggctgctcttgaactcttggcctc--gtgatctgcccgcctcagactcccaaagtgctgggat---tacaggtgtgagccaccacgcctgg-c
i rheMac8.chr4             C 0 I 1864
s macFas5.chr4             29794404 122 - 170955103 ctcttagtagagacagggtttcaccatgttggcctggctgctcttgaactcttggcctc--gtgatctgcccgcctcagactcccaaagtgctgggat---tacaggtgtgagccaccacgcctgg-c
i macFas5.chr4             C 0 I 648
s macNem1.NW_012011356v1    2840315 122 -   2996164 ctcttagtagagacagggtttcaccatgttggcctggctgctcttgaactcttggcctt--gtgatctgcccgcctcagactcccaaagtgctgggat---tacaggtgtgagccaccacgcctgg-c
i macNem1.NW_012011356v1   C 0 I 309
s cerAty1.NW_012002711v1     589284 122 +    766320 tttttagtagagacaggatttcaccatgttagccaggatggtcttgatctcctgacctc--gtaatctgcttgcctcggcctcccaaagtgctgggat---tacaggtgtgagccaccgtgcctgg-t
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17            29046506 122 -  71996105 tttttagtggagacaggatttcaccatgttagccaggatggtcttgatctcctgacctc--gtaatctgcttgcctcggcctcccaaagtgctgggat---tacaggtgtgagccactgtgcctgg-c
i chlSab2.chr17            I 7 I 1
s manLeu1.NW_012099233v1     243774 122 +    290775 tttttagtagagacaggatttcaccatgttagccaggatggtcttgatctcctgacctc--gtaatctgcttgcctcggcctcccaaagtgctgggat---tacaggtgtgagccaccgtgcctgg-t
i manLeu1.NW_012099233v1   I 685 I 1
s colAng1.NW_012115566v1    2684464 122 -   3067355 tttttagtagagacaggatttcaccatgttagccaggatggtcttgatctcctgacctc--gtgatctgcttgcctcggcctcccaaagtgctgggat---tacaagtgtgagccaccgtgcctgg-c
i colAng1.NW_012115566v1   I 2 I 1
s calJac3.chrUn_GL286223      62316 120 +    132061 tttttagtagagacagggtttcaccttgttgaccaggatggtctcgatctcttgacctt--gtgatccacc--tctcggcctcccaaagtgctgggat---tataggcatgagccacctcgcccgg-c
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     281314 123 -   1771730 tttttagtagagatggggttttgccatcttggccaggctggtcttgaattcctgacctt--gtgatccacccaccttggcctcccaaagtgctggaat---tacaggcgtgagccaccgcacctggcc
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           161653 125 +  18854210 tttttagtagagacagtgtctcac--tcttgctcaagctggtctccaactcttgagcttaagcaatccacctgcctcagcttcccagagtgctgagattactacaggtgttagccaccccacctag-c
i otoGar3.GL873550         C 0 I 1
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e canFam3.chr35            26265360 166 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M
e aotNan1.NW_018509740v1     350614 1732 -    457564 I

a score=47957.000000
s hg38.chr6_GL000254v2_alt   935445 5 +   4827813 Agttg
s panTro5.chr6             29898218 5 + 175400573 Agttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30131871 5 + 173848474 Agttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5931483 5 +   6154872 Agttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74648742 5 + 122973662 agttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30131717 5 + 172585720 agttg
i rheMac8.chr4             I 1864 C 0
s macFas5.chr4             29795174 5 - 170955103 Agttg
i macFas5.chr4             I 648 C 0
s macNem1.NW_012011356v1    2840746 5 -   2996164 agttg
i macNem1.NW_012011356v1   I 309 C 0
s cerAty1.NW_012002711v1     589407 5 +    766320 agttg
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17            29046629 5 -  71996105 Agttg
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012099233v1     243897 5 +    290775 Agttg
i manLeu1.NW_012099233v1   I 1 C 0
s colAng1.NW_012115566v1    2684587 5 -   3067355 agttg
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chrUn_GL286223      62436 5 +    132061 agttg
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     281437 5 -   1771730 AGCTG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           161779 5 +  18854210 agttg
i otoGar3.GL873550         I 1 I 1
e micMur3.chr6               181640 13423 + 123392446 I
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e proCoq1.NW_012152574v1     654680 1037 +    730504 I
e canFam3.chr35            26265360 166 +  26524999 I
e saiBol1.JH378388            14000 2744 -    110772 M
e aotNan1.NW_018509740v1     350614 1732 -    457564 I

a score=227884.000000
s hg38.chr6_GL000254v2_alt   935450 18 +   4827813 ttacatttttaatgaaag
s panTro5.chr6             29898223 18 + 175400573 ttacatttttaatgaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30131876 18 + 173848474 ttacatttttaatgaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5931488 18 +   6154872 ttacatttttaatgaaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74648747 18 + 122973662 ttacatttttaatgaaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30131722 18 + 172585720 ttacatttttaatgaaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29795179 18 - 170955103 ttacatttttaatgaaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2840751 18 -   2996164 ttacatttttaatgaaag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     589412 18 +    766320 ttacatttttaatgaaag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29046634 18 -  71996105 ttacatttttaatgaaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     243902 18 +    290775 ttacatttttaatgaaag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2684592 18 -   3067355 ttacatttttaatgaaag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      62441 18 +    132061 ttacatttttaatgaaag
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     281442 18 -   1771730 ctacatttttaatgaaag
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               195063 18 + 123392446 ttatatttttaatggaag
i micMur3.chr6             I 13423 C 0
s proCoq1.NW_012152574v1     655717 18 +    730504 ttatatttttaatggaag
i proCoq1.NW_012152574v1   I 1037 C 0
s otoGar3.GL873550           161785 18 +  18854210 tcatatttttaatgggag
i otoGar3.GL873550         I 1 C 0
s canFam3.chr35            26265526 18 +  26524999 ttacatttatgatagaag
i canFam3.chr35            I 166 C 0
e mm10.chr17               57972840 1815 -  94987271 I
e dasNov3.JH582591            85687 1200 +    102524 I
e saiBol1.JH378388            14000 2744 -    110772 M
e aotNan1.NW_018509740v1     350614 1732 -    457564 I

a score=1289006.000000
s hg38.chr6_GL000254v2_alt   935468 104 +   4827813 aaaatgttaaatcc-------agttat-------tgaaaataaggaggcagtacttttctcatccaagttcatggactttctgaattttgtccccagagtccTTTGGTGTTCTAGGAC
s panTro5.chr6             29898241 104 + 175400573 aaaatgttaaatcc-------agttat-------tgaaaataaggaggcagtacttttctcatccaagttcatgcactttctgaattttgtccccagagtcctttggtgttctaggac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30131894 104 + 173848474 aaaatgttaaatcc-------agttat-------tgaaaataaggaggcagtacttttctcatccaagttcatgcactttctgaattttgtccccagagtcctttggtgttctaggac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5931506 104 +   6154872 aaaatgttaaatcc-------agttat-------tgaaaataaggaggcagtacttttctcatccaagttcatggactctctgaattttgtccccagagtcctttggtgttctaggac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74648765 104 + 122973662 aaaatgttaaatcc-------agttat-------tgaaaataaggaggcagtacttttctcatcccagtttgtggactctctgaattctgtccccagagtccTTTGGTGTTCTAGGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30131740 104 + 172585720 aaaatgttaaatcc-------agttaa-------tgaaaataaggaggcagtacttttctcatccaaattcatggactctctgaattctgtccccagaatcctttggtgttctaggat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29795197 104 - 170955103 aaaatgttaaatcc-------agttaa-------tgaaaataaggaggcagtacttttctcatccaaattcatggactctctgaattctgtccccagaatccTTTGGTGTTCTAGGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2840769 104 -   2996164 aaaatgttaaatcc-------agttaa-------tgaaaataaggaggcagtacttttctcatccaaattcatggactctctgaattctgtccccagaatcctttggtgttctaggat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     589430 104 +    766320 aaaatgttaaatcc-------agttaa-------tgaaaataaggaggcagtacttttctcatccaaatttatggactctctgaattctgtccccagagtcctttggtgttctaggat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29046652 104 -  71996105 aaaatgttaaatcc-------agttaa-------tgaaaataaggaggcagtacttttctcatccaaattcatggactctctgaattctgtccccagagtccTTTGGTGTTCTAGGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     243920 104 +    290775 aaaatgttaaatcc-------agttaa-------tgaaaataaggaggcagtacttttctcatccaaatttatggactctctgaattctgtccccagagtcctttggtgttctaggat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2684610 104 -   3067355 aaaatgttaaatcc-------agttaa-------tgaaaataaggaggcagtacttttctcatccaagttcatggactctctgaattctgtccccagagtcctttggtgttctaggat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      62459 104 +    132061 aaaatgttaaatcc-------agctaa-------tgaaaataagaaagcagtacttttctcatccaacttcatggactctctgaattctgtccccagaGACCTTTGGTGTTCTAGGAC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     281460 104 -   1771730 aaaatgttgaatcc-------agctaa-------tgaaaataaggaagcagtacttttctcatccaacttcatggactctctgaattctgtccccagaGACCTTTGGTGTTCTAGGAC
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               195081 104 + 123392446 aaaatgctaaatcc-------agttag-------tggaaataaagaggtagtgcttttctcatccaagttcacagactacctggattttgcccctagaatcctttggtgttcttgaac
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     655735 104 +    730504 aaaatgctaaatcc-------agttag-------tgaaaataaagaggtagtgcttttctcatccaagttcatggactacctggattttgtccctagaatcctttggtgttcttggac
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           161803 102 +  18854210 aaaatgctaaatcc-------aatttg-------tgaaatt--agaggtagtgctttcctcatccaagttcatgaactcgctggattctgtccctagaatccTTTGGTCTTCTTGGAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57974655 107 -  94987271 Aaaaagctaaattcaatcagaagttaa-------tgaaaataaagggacagtgc--accccagccatgttcacggact--ctacagcctgtccccagagtcctttgtcatttcggggc
i mm10.chr17               I 1815 C 0
s canFam3.chr35            26265544 108 +  26524999 -aaatgctaaattc-------agtcaaagcttggtgaaaataaagatgca-tgtttttctcat-tgagttcatgagctccctgaactctgtccacagacCGCTGTGGTGTCCTTGGAC
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            85687 1200 +    102524 I
e saiBol1.JH378388            14000 2744 -    110772 M
e aotNan1.NW_018509740v1     350614 1732 -    457564 I

a score=547464.000000
s hg38.chr6_GL000254v2_alt   935572 41 +   4827813 CCCAGGTTAAG---GAACC----AAAAAAGACAGGTGGGTGGGGCATG
s panTro5.chr6             29898345 41 + 175400573 cccaggttaag---gaacc----AAAAAAGACAGGTGGGTGGGGCATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30131998 41 + 173848474 cccaggttaag---gaacc----AAAAAAGACAGGTGGGTGGGGCATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5931610 41 +   6154872 cccaggttaag---gaacc----AAAAAAGACAGGTGGGTGGGGCATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74648869 41 + 122973662 CCCAGGTTAAG---GAACC----AAAAAAGACAGGTGGGTGGGGCATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30131844 41 + 172585720 cccaggttaag---gaacc----AAAAAAGAAAGGTGGGTGGGGCATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29795301 41 - 170955103 CCCAGGTTAAG---GAACC----AAAAAAGAAAGGTGGGTGGGGCATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2840873 41 -   2996164 cccaggttaag---gaacc----AAAAAAGAAAGGTGGGTGGGGCATG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     589534 41 +    766320 cccaggttaag---gaacc----AAAAAAGAAAGGTGGGTGGGGCATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29046756 41 -  71996105 CCCAGGTTAAG---GAACC----AAAAAAGAAAGGTGGGTGGGGCATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     244024 41 +    290775 cccaggttaag---gaacc----AAAAAAGAAAGGTGGGTGGGGCATG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2684714 41 -   3067355 cccaggttaag---gaacc----AAAAAAGAAAGGTGGGTGGGGCATG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      62563 41 +    132061 CCCAGGTTAAG---GAACC----AAAAAAGAAGGGTGGGTGGGGCATG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     281564 41 -   1771730 CCCAAGTTAAG---GAACC----AAAAAAGAAAGGTGGTTGGGGCATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     352346 41 -    457564 CCCAGGTTAAG---GAACC----AAAAAAGAAAGGTGGGTGGGGCATG
i aotNan1.NW_018509740v1   I 1732 C 0
s micMur3.chr6               195185 44 + 123392446 ctctggttaag---aaACTCAA-AAAGGAGAAGGGTGGTTGGGGCAGG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     655839 44 +    730504 ctctggttaag---aaacccAA-AAAGGAGAAGGGTGGCCGGGGCATG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           161905 44 +  18854210 CCCTGGTTAAG---AAATCTGA-AAAGGAGAAGGGTGGTTGGGGCATA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57974762 26 -  94987271 ttcaggttaag------------aa----------TGGGCGTGGCACA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26265652 45 +  26524999 CCCAGGTTAAG---AAAACCAATAACAGAGAAGGGTGGGTGGGGCTCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            86887 41 +    102524 CCCTGGCTAAGCTCCACCC----GGAGCCGAGGGGCGGGTGGCGC---
i dasNov3.JH582591         I 1200 C 0
e saiBol1.JH378388            14000 2744 -    110772 M

a score=1883250.000000
s hg38.chr6_GL000254v2_alt   935613 106 +   4827813 AGGGGGAACACATGTTAACCCTGTTTGTTCTGGTGAACAATTCAGATCCCCACTTTCTGAGGGTGCCCTGCTGGAAGATAACCCTGTTTGTAATTGTGCCGGTTCT
s panTro5.chr6             29898386 106 + 175400573 AGGGGGAACACATGTTAACCCTGTTTGTTCTGGTGAACAATGCAGATCCCCACTTTCTGAGGGTGCCCTGCTGGAAGATAACCCTGTTTGTAATTGTGCCGGTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30132039 106 + 173848474 AGGGGGAACACATGTTAACCCTGTTTGTTCTGGTGAACAATTCAGATCCCCACTTTCTGAGGGTGCCCTGCTGGAAGATAACCCTGTTTGTAATTGTGCCGGTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5931651 106 +   6154872 AGGGGAAACACATGTTAACCCTGTTTGTTCTGGTGAACAATTCAGATCCCCACTTTCTGAGGGTGCCCTGCTGGAAGATAACCCTGTTTGTAATTGTGCCGGTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74648910 105 + 122973662 AGGGG-AACACATGTTAACCCTGTTTGTTCTGGTGAACAATTCAGATCCCCACTTTCTGAGGGTGCCCTGCTGGAAGATAACCCTGTTTGTAATTGTGCCGGTTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30131885 106 + 172585720 AGGGGGAACACATGTTAACCCTGTTTGTTCTGGTGAACAATTCAGATCCCCACTTTCTGAGGGTGCCCTGCTGGAAGATAACCCTGTTTGTAATTGTGCCGGTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29795342 106 - 170955103 AGGGGGAACACATGTTAACCCTGTTTGTTCTGGTGAACAATTCAGATCCCCACTTTCTGAGGGTGCCCTGCTGGAAGATAACCCTGTTTGTAATTGTGCCGGTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2840914 106 -   2996164 AGGGGGAACACATGTTAACCCTGTTTGTTCTGGTGAACAATTCAGATCCCCACTTTCTGAGGGTGCCCTGCTGGAAGATAACCCTGTTTGTAATTGTGCCGGTTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     589575 106 +    766320 AGGGGGAACACATGTTAACCCTGTTTGTTCTGGTGAACAATTCAGATCCCCACTTTCTGAGGGTGCCCTGCTGGAAGATAACCCTGTTTGTAATTGTGCCGGTTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29046797 106 -  71996105 AGGGGGAACACATGTTAACCCTGTTTGTTCTGGTGAACAATTCAGATCCCCACTTTCTGAGGGTGCCCTGCTGGAAGATAACCCTGTTTGTAATTGTGCCGGTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     244065 106 +    290775 AGGGGGAACACATGTTAACCCTGTTTGTTCTGGTGAACAATTCAGATCCCCACTTTCTGAGGGTGCCCTGCTGGAAGATAACCCTGTTTGTAATTGTGCCGGTTCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2684755 106 -   3067355 AGGGGGAACACATGTTAACCCTGTTTGTTCTGGTGAACAATTCAGATCCCCACTTTCTGAGGGTGCCCTGCTGGAAGATAACCCTGTTTGTAATTGTGCCGGTTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      62604 106 +    132061 AGGGGGAACATACGCTAACCCTGTTTGTTCTGGTGAATAATTCAGATCCCCACTTTCTGAGGGTGCCCTGCTGGAAGATAACCCTGTTTGTAATTGTGCCGGTTCT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            16858 106 -    110772 AGGGGTAACATATGTTAACCCTGTTTGTTCTGGTGAATAATTCAGATCCCCACTTTCTGAGAGTGCCCTGCTGGAAGATAACCCTGTTTGTAATTGTGCCGGTTCT
i saiBol1.JH378388         M 2744 C 0
s cebCap1.NW_016107755v1     281605 106 -   1771730 AGAGGGAACATATGTTAACCTTGTTTGTTTTGGTGATTAATTCAGATCCCCACTTTCTGAGGGTGCCCTGCTGGAAGATAACCCTGTTTGTAATTGTGCCAGTTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     352387 106 -    457564 AGGGGGAACATATGTTAACCCTGTTTGTTCTGGTGAATAATTCAGATCCCCACTTTCTGAGGGTGCCCTGCTGGAAGATAACCCTGTTTGTAATTGTGCCGGTTCT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               195229 106 + 123392446 AGGAGAAATGCGTGTTAACCCCGTTTGTTCTGGTGAACAATTCAGATCCGCACTTTCTGAGGGTGCCCAGCTGGAAGATAGCCCTGTTTGTAATCGTGCCGGTCCT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     655883 106 +    730504 AGGAGAAATACGTGTTAACACTGTTCGTTCTGGTGAACAATTCAGATCCGCATTTTCTGAGAGTGCCCTGCTGGAAGATAACTCTGTTTGTAATTGTGCCGGTCCT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           161949 104 +  18854210 AGGAGAAATACATGCTAA--CTGTTCATTTTGGTGAACAATTTAGATCCCCACTTTCTGAGGGTGCCCTGCTGGAAGATAACCCTGTTTGTAATTGTACCAGTTCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57974788  92 -  94987271 GAGGGAGACAC------------TCTGCTCTGCTTTAC--CTCAGATCCTCACTTCCTGAGGGTGCCCTGCTGGAAGATAACACTGTTTGTTATTGTGCCTGTTCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26265697 102 +  26524999 --AGGGGGTACATGCTAATTCTGTTC--TGTGGCCACCAACCCAGACCCCCACTTCCTGAGGGTGCCCTGCTGGAAGATAACGCTGTTTGTCCTGGTGCCGGTTCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            86928 100 +    102524 --GGGGAGCCC--GCCAGCGCCGCCTGCTCTG--TGCCCGCCCAGACCCCCACTTCCTGAGGGTGCCCTGCTGGAAGGTCGCCCTGTTCGCCGTCGTGCCGGTCCT
i dasNov3.JH582591         C 0 M 3996

a score=2671990.000000
s hg38.chr6_GL000254v2_alt   935719 174 +   4827813 TGGACCCTTGGTTGCCTTGATCATCTGCTACAACTGGCTACATCGAAGACTAGCAGGTGCAGTGGCTGGGCAGC-AGGCAAGACCACCAAATAGTGGGGGACCAAGTCAGCTCTGAATGGGAAGCCAAAAGAGAATAGAACCAGGACTCAAGATTA-GGGGAGCTGGGATTTCCTT
s panTro5.chr6             29898492 174 + 175400573 TGGACCCTTGGTTGCCTTGATCATCTGCTACAACTGGCTACATCGAAGACTAGCAGGTGCAGTGGCTGGGCAGC-AGGCAAGACCACCAAATAGTGGGGGACCAAGTCAGCTCTGAATGGGAAGCCAAAAGAGAATAGAACCAGGACTCAAGATTA-GGGGAGCCGGAATTTCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30132145 174 + 173848474 TGGACCCTTGGTTGCCTTGATCATCTGCTACAACTGGCTACATCGAAGACTAGCAGGTGCAGTGGCTGGGCAGC-AGGCAAGACCACCAAATAGTGGGGGACCAAGTCAGCTCTGAATGGGAAGCCAAAAGAGAATAGAACCAGGACTCAAGATTA-GGGGAGCTGGAATTTCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5931757 174 +   6154872 TGGACCCTTGGTTGCCTTGATCATCTGCTACAACTGGCTACATCGAAGACTAGCAGGTGCAGTGGCTGGGCAGC-AGGCAAGACCGCCAAATAGTGGGGGACCAAGTCAGCTCTGAATGGGAAGCCAAAAGAGAATAGAACCAGGACTCAAGATTA-GGGGAGCTGGGATTTCCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74649015 174 + 122973662 TGGACCCCTGGTTGCCTTGATCATCTGCTACAACTGGCTACATCGAAGACTAGCAGGTGCAGTGGCTGGGCAGC-AGGCAAGACCACCAAATAGTGGGGGACCAAGTCAGCTCTGAATGGGAAGCCGAAAGAGAATAGAAACAGGACTCAAGATTA-GGGGAGCTGGGATTTCCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30131991 174 + 172585720 TGGACCCCTGGTTGCCTTGATCATCTGCTACAACTGGCTACATCGAAGACTAGCAGGTGCAGTGGCTGGGCAGC-AGGCAAGACCACCAAATAGTGGGGAACCAAGCCAGCTTTGAATGGGAAGCTGAAAGAGAATAGAACCAGGGCTCAAGATTA-GGGGAGCTGGGATTTCCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29795448 174 - 170955103 TGGACCCCTGGTTGCCTTGATCATCTGCTACAACTGGCTACATCGAAGACTAGCAGGTGCAGTGGCTGGGCAGC-AGGCAAGACCACCAAATAGTGGGGAACCAAGCCAGCTTTGAATGGGAAGCTGAAAGAGAATAGAACCAGGGCTCAAGATTA-GGGGAGCTGGGATTTCCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2841020 174 -   2996164 TGGACCCCTGGTTGCCTTGATCATCTGCTACAACTGGCTACATCGAAGACTAGCAGGTGCAGTGGCTGGGCAGC-AGGCAAGACCACCAAATAGTGGGGAACCAAGCCAGCTTTGAATGGGAAGCTGAAAGAGAATAGAACCAGGGCTCAAGATTA-GGGGAGCTGGGATTTCCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     589681 174 +    766320 TGGACCCCTGGTTGCCTTGATCATCTGCTACAACTGGCTACATCGAAGACTAGCAGGTGCAGTGGCTGGGCAGC-AGGCAAGACCACCAAATAGTGGGGAACCAAGTCAGCTTTGAATGGGAAGCCGAAAGAGAATAGAACCAGGGTTCAAGATTA-GGGGAGCTGGGATTTCCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29046903 174 -  71996105 TGGACCCCTGGTTGCCTTGATCATCTGCTACAACTGGCTACATCGAAGACTAGCAGGTGCAGTGGCTGGGCAGC-AGGCAAGACCACCAAATAGTGGGGAACCAAGTCAGCTTTGAATGGGAAGCCAAAAGAGAATAGAACCAGGGCTCAAGATTA-GGGGAGCTAGGATTTCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     244171 174 +    290775 TGGACCCCTGGTTGCCTTGATCATCTGCTACAACTGGCTACATCGAAGACTAGCAGGTGCAGTGGCTGGGCAGC-AGGCAAGACCACCAAATAGTGGGGAACCAAGTCAGCTTTGAATGGGAAGCCAAAAGAGAATAGAACCAGGGCTCAAGATTA-GGAGAGCTGGAATTTCCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2684861 174 -   3067355 TGGACCCCTGGTTGCCTTGATCATCTGCTACAACTGGCTACATCGAAGACTAGCAGGTGCAGTGGCTGGGCAGC-AGGCAAGACCACCAAATAGTGGGGAACCAAGTCAGCTTTGAATGGGAAGCCAAAAGAGAATAGAACCAGGGCTCAAGATTA-GGGGAGCTGGGATCTCCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      62710 169 +    132061 TGGACCGCTGGTCGCCTTGATCATCTGTTACAACTGGCTACATCGAAGATTAGCAGGTGCAGTGGCTGGGCAGC-AGGCAAGACCACCAAATAGTGGGGGAC-AAGTCAGCTCTGAGTGGGAAAC----AGAGAATGGAACCAGGGCTCAAGATTA-GGGAAGCTGGGATTTCCTT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            16964 167 -    110772 TGGACCCCTGGTTGCCTTGATCATCTGTTACAACTGGCTACATCGAAGACTAGCAGGTGCAGTGGCTGGGCAGC-AGGCAAGACCACTGAATAGTGGGGGACAAAGTCAGCTCTGAATGGGAAAC----AGAGAATGGAATCAGGGCTCAAGATTA-GGGAAGCT---ATTTCCTT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     281711 170 -   1771730 TGGACCCCTGGTCGCCTTGATCATCTGTTACAACTGGCTACATAGAAGACTAGCAGGTGCAGTGGCTGGGCAGC-AGGCAAGACCACCAAATAGTGGGGGACCAAGTCAGCTCTGAATGGGAAAC----AGAGAATGGAACCAGGGCTCAAGATTA-GGGAAGCTGGGATTTCCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     352493 170 -    457564 TGGACCCCTGGTCGCCTTGATCATCTGTTACAACTGGCTACATCGAAGACTAGCAGGTGCAGTGGCTGGGCAGC-AGGCAAGACCACCAAATAGTGGGGGACCAAGTCAGCTCTGAATGGGAAAC----AGAGAGTGGAACCAGGGCTCAAGATTA-GGGAAGCTGGGATTTCCTT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               195335 170 + 123392446 TGGCCCTCTGGTTGCCTTGATCATCTGCTACAACTGGCTACATCGAAGACCTGCAGGTGCAGTGGCTGGGCAGC-AGGCAGG---ACCAAGTAGTTGGGGACCAAGGCAGCCCTGGATGGGAAGCAGAAAGAGAATGGAACCAGGGCACAAGAGT--GGGGGGCTGGGACTTCCTT
i micMur3.chr6             C 0 I 95
s proCoq1.NW_012152574v1     655989 174 +    730504 TGGACCTCTGGTTGCCTTGATCATCTGCTACAACTGGCTACATCGAAGACTAGCAGGTGAAGTGGCGGGGCGGC-AGGCAGGACCACCAAGTAGTGGGGGACCAAGTCGGCCCTGGATGGGAAGCAGAAAGAGATTGGAACCAGGGCACAAGAGTA-GGGGAGCTGGGACTTCCTT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           162053 175 +  18854210 TGGACCTCTGGTTGCCTTGATCATTTGCTACAACTGGCTACATCGAAGACTAGCAGGTACAGTGGCTGGGCAGC-AAATAGGATCACCAAGTAGTAGGGGACCAAGTCAGCCCTGGGTAGGAAGCAGAAAGAGAATGGAAACAAGGTTCAAGATAAGGGGGTGCTCAGACTTCCTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57974880 166 -  94987271 TGGACCCCTGGTTGCCTTGATCATCTGCTACAACTGGCTGCACCGAAGACTGGCAGGTTCGGTGTCTGGGCAGCAAAACAGGACTGCTATGCATCAGGGAACTCAGGCAGACCAGTATGGGA-------AAAGAGTGGAACCAAGGTTCTAGATTC-CAGGGATGGGAATCTTT--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26265799 117 +  26524999 TGGGCCCCTGCTTGCCTTGATCATCTGCTACAACTGGCTTCATCGAAGACTAGCAGGTGCTGTG---GGGTGGG-GGGCAGGACCTCCGAGTGG--GGGGACCAGGT----TCTGA--------------------------------------CA-GGT--------ATTTCT--
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            87028 3996 +    102524 M

a score=1583346.000000
s hg38.chr6_GL000254v2_alt   935893 129 +   4827813 ATTCCTCTGTCCCCATGCCCAACC----CCAGGCTCTTCTGAGAAACTGTGAAGAGAACCACTTACTG-GATCTGTGGGATCCCCCAGT------GGAAAGGGCAGTGTGGGTCACTCCAAATGTCCATAGGGAGGATGT
s panTro5.chr6             29898666 129 + 175400573 ATTCCTCTGTCCCCATGCCCAACC----CCAGGCTCTTCTGAGAAACTGTGAAGAGAACCACTTACTG-GATCTGTGGGATCCCCCAGT------GGAAAGGGCAGTGTGGGTCACTCCAAATGTCCATAGGGAGGATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30132319 129 + 173848474 ATTCCTCTGTCCCCATGCCCAACC----CCAGGCTCTTCTGAGAAACTGTGAAGAGAACCACTTACTG-GATCTGTGGGATCCCCCAGT------GGAAAGGGCAGTGTGGGTCACTCCAAATGTCCATAGGGAGGATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5931931 129 +   6154872 ATTCCTCTGTCCCCATGCCCAACC----CCAGGCTCTTCTGAGAAAGTGTGAAGAGAACCACTTACTG-GATCTGTGGGATTCCCCAGT------GGAAAGGGCAGTGTGGGTCACTCCAAATGTCCATAGGGAGGATGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74649189 129 + 122973662 ATTCCTCTGTCCCCATGCCCAACC----CCAGGTGCTTCTGAGAAACTGTGAAGAGAACCACTTACTG-GATCTGTGGGCCCCCCCAGT------GGAAAGGGCAGTGTGGGTCACTCCAAATGTCCATAGGGAGGATGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30132165 129 + 172585720 ATTCCTCTGTCCCCATGCCCAACC----CCAGGCTCTTCTGAGAAACTGTGAAGAGAACCACTTACTG-GATCTGTGGGGTCCCCCAGT------GGAAAGGGCAGTGTGGGTCACTCCAAATATCCACAGGGAGGATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29795622 129 - 170955103 ATTCCTCTGTCCCCATGCCCAACC----CCAGGCTCTTCTGAGAAACTGTGAAGAGAACCACTTACTG-GATCTGTGGGGTCCCCCAGT------GGAAAGGGCAGTGTGGGTCACTCCAAATATCCACAGGGAGGATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2841194 129 -   2996164 ATTCCTCTGTCCCCATGCCCAACC----CCAGGCTCTTCTGAGAAACTGTGAAGAGAACCACTTACTG-GATCTGTGGGGTCCCCCAGT------GGAAAGGGCAGTGTGGGTCACTCCAAATATCCACAGGGAGGATGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     589855 129 +    766320 ATTCCTCTGTCCCCATGCCCAACC----CCAGGCTCTTCTGAGAAACTGTGAAGAGAACCACTTACTG-GATCTGTGGGGTCCCCCAGT------GGAAAGGGCAGTGTGGGTCACTCCAAATATCCACAGGGAGGATGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29047077 129 -  71996105 ATTCCTCTGTCCCCATGCCCAACC----CCAGGCTCTTCTGAGAAACTGTGAAGAGAACCACTTACTG-GATCTGTGGGGTCCCCCAGT------GGAAAGGGCAGTGTGGGTCACTCCAAATATCCACAGGGAGGATGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     244345 129 +    290775 ATTCCTCTGTCCCCATGCCCAACC----CCAGGCTCTTCTGAGAAACTGTGAAGAGAACCACTTACTG-GATCTGTGGGGTCCCCCAGT------GGAAAGGGCAGTGTGGGTCACTCCAAATATCCACAGGGAGGATGT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2685035 129 -   3067355 ATTCCTCTGTCCCCATGCCCAACC----CCAGGCTCTTCTGAGAAACTGTGAAGAGAACCACTTACTG-GATCTGTGGGGTCCCCCAGT------GGAAAGGGCAGTGTGGGTCACTCCAAATATCCACAGGGAGGATGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      62879 127 +    132061 ACTCCTCTGTCCCCATGCCCAATC----CCAGGTTCTTCTGAAAAACTGTGAAGAGAACCACTTACTA-AATCTGTGGGGTCCCCCAGT------GGAAAGGG--GTGTGGGTCACTCCGAATGTCCACAGGGAGGATGT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            17131 127 -    110772 ACTCGTCTGTCCCTGTGCCCAACC----CCAGGTTCTTCTGAAAAACTGTGAAGAGAACTGCTTACTA-AATCTGTGGGGTCCCCCAGT------GGAAAGGG--GTGTGGGTCACTCCAAATGTCCACAGGGAGGATGT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     281881 127 -   1771730 ACTCCTCTCTCCCCATGCCCAACC----CCAGGTTCTTCTGAAAAACTGTGAAGAGAACCACTTACTA-AATCTGTGGGGTCCCCCAGT------GGAAAGGG--GTGTGGGTCACTCCAAATGTCCACAGGGAGGATGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     352663 127 -    457564 ACTCCTCTGTCCCCATGCCCAACT----CCAGGTTCTTCTGAAAGACTGTGAAGAGAGCCACTTACTA-AATCTGTGGGGTCCCCCAGT------GGAAAGGG--GTGTGGGTCAGTCCAAATGTCCACAGGGAGGATGT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     656163 118 +    730504 CCTGTCT--GCCCCGTGCCCAA-C----CCAGGCTCCTC----AAAC--TGAAGGGAACCACGTACTG-GATCTGTGGCATCCCTCAGC------AGAAAGGG--GGGTGGGTAACTCCAGATGTCCACAAGGAGGATGT
i proCoq1.NW_012152574v1   C 0 I 1
s otoGar3.GL873550           162228 129 +  18854210 TCTGCTTTGTCTCCATGCCCAACC----CCAGGATCCTC----AAACTGTGAAGAGAACCACTGACTG-GATCTCTGGTGTCCCTCAATGGAAAGAGAAAGAG--GGGAGGGGTACTCCAGCTGTTCACAGGGAGGATGT
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57975046  94 -  94987271 --------------ACTCTCACCA----TCAGAATCCATAGGAAAAC-----GGAGAACCACTTAATGAGATGTATAGG-CCTCTTAAT------GGGGAGGG-----AGGGT---------TGTCTGGGGAGGTGAG--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26265916 106 +  26524999 GTCCTCCTGTCCCCAAGGCCAGCCAACATCAGGCTCTTC--AGAGTCCATGATAAGAGCTACTTGCT--GAGATGGGGGGGCCCTCAGC------AGAGGGGA-AGGGTGGGT-----------------------ACGT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               195505  95 + 123392446 I
e dasNov3.JH582591            87028 3996 +    102524 M

a score=2005353.000000
s hg38.chr6_GL000254v2_alt   936022 153 +   4827813 GGGGAAGGTGCTATTCATCTTCCACTAATCACA-TAT----TTGTTTCTTTT--TGTTTTCAGGGCAATTCCTTGAAGAGCTACGTAAGTTCTCT------TCTCTCTGTTA----------------TAAGCAG----AGAA------------------------TAAAA-----AGCCAGG-------------------------------------------------------------------------AAAGGGAGA--------------CAGAAGCAACAAGA-GGAAGAGG------------------------------------------
s panTro5.chr6             29898795 153 + 175400573 GGGGAAGGTGCTATTCATCTTCCACTAATCACA-TAT----TTGTTTCTTTT--TGTTTTCAGGGCAATTCCTTGAAGAGCTACGTAAGTTCTCT------TCTCTCTGTTA----------------TAAGCAG----AGAA------------------------TAAAA-----AGCCAGG-------------------------------------------------------------------------AAAGGGAGA--------------CAGAAGCAACAAGA-GGAAGAGG------------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30132448 153 + 173848474 GGGGAAGGTGCTATTCATCTTCCACTAATCACA-TAT----TTGTTTCTTTT--TGTTTTCAGGGCAATTCCTTGAAGAGCTACGTAAGTTCTCT------TCTCTCTGTTA----------------TAAGCAG----AGAA------------------------TAAAA-----AGCCAGG-------------------------------------------------------------------------AAAGGGAGA--------------CAGAAGCAACAAGA-GGAAGAGG------------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5932060 153 +   6154872 GGGGAAGGTGCTATTCATCTTCCACTAATCACA-TAT----TTGTTTCTTTT--TGTTTTCAGGGCAATTCCTTGAAGAGCTACGTAAGTTCTCT------TCTCTCTGTTA----------------TAAGCAG----AGAA------------------------TAAAA-----AGCCAGG-------------------------------------------------------------------------AAAGGGAGA--------------CAGAAGCAACAAGA-GGAAGAGG------------------------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74649318 153 + 122973662 GGGGAAGGTGCTGTTCATCTTCCACTGATCACT-TAT----TTCTTTCTTTT--TGTTTTCAGGGCAATTCCTTGAAGAGCTAAGTAAGTTCTCT------TCTCTCTCTTA----------------TAAGCAG----AGAA------------------------TAAAA-----AGCCAGG-------------------------------------------------------------------------AAAGGGAAA--------------CAGAAGCAACAAGA-GGAAGAGG------------------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30132294 151 + 172585720 GGGGAAGGTGCTATTCATCTTCCACTGATTATG-TAT----TTGTTTCTTTT--TGTTTTCAGGGCAATTCCTTGAAGAGCTAAGTAAGTTATCT------TCTCTCTCTTA----------------TAAGC------AGAA------------------------TAAAA-----AGCGAGG-------------------------------------------------------------------------AAAGGGAGA--------------CAGAAGCAATAAGA-GGAAGAGG------------------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29795751 151 - 170955103 GGGGAAGGTGCTATTCATCTTCCACTGATTATG-TAT----TTGTTTCTTTT--TGTTTTCAGGGCAATTCCTTGAAGAGCTAAGTAAGTTATCT------TCTCTCTCTTA----------------TAAGC------AGAA------------------------TAAAA-----AGCGAGG-------------------------------------------------------------------------AAAGGGAGA--------------CAGAAGCAACAAGA-GGAAGAGG------------------------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2841323 151 -   2996164 GGGGAAGGTGCTATTCATCTTCCACTGATCATG-TAT----TTGTTTCTTTT--TGTTTTCAGGGCAATTCCTTGAAGAGCTAAGTAAGTTATCT------TCTCTCTCTTA----------------TAAGC------AGAA------------------------TAAAA-----AGCGAGG-------------------------------------------------------------------------AAAGGGAGA--------------CAGAAGCAACAAGA-GGAAGAGG------------------------------------------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     589984 153 +    766320 GGGGAAGGTGCTATTCATCTTCCACTGATCGTG-TAT----TTGTTTCTTTT--TGTTTTCAGGGCAATTCCTTGAAGAGCTAAGTAAGTTATCT------TCTCTCTCTTA----------------TAAGCAG----AGAA------------------------TAAAA-----AGGGAGG-------------------------------------------------------------------------AAAGGGAGA--------------CAGAAGCAACAAGA-GGAAGAGG------------------------------------------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29047206 153 -  71996105 GGGGAAGGTGTTATTCATCTTCCACTGATCATG-TAT----TTGTTTCTTTT--TGTTTTCAGGGCAATTCCTTGAAGAGCTAAGTAAGTTATCT------TCTCTCTCTTA----------------TAAGCAG----AGAA------------------------TAAAA-----AGTGAGG-------------------------------------------------------------------------AAAGGGAGA--------------CAGAAGCAACAAGA-GGAAGAGG------------------------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     244474 153 +    290775 GGGGAAGGTGCTATTCATCTTCCACTGATCATG-TAT----TTGTTTCTTTT--TGTTTTCAGGGCAATTCCTTGAAGAGCTAAGTAAGTTATCT------TCTCTCTCTTA----------------TAAGCAG----AGAA------------------------TAAAA-----AGGGAGG-------------------------------------------------------------------------AAAGGGAGA--------------CAGAAGCAACAAGA-GGAAGAGG------------------------------------------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2685164 154 -   3067355 GGGGAGGGTGCTATTCATCTTCCACTGATCATG-TAT----TTGTTTCTTTT--TGTTTTCAGGGCAATTCATTGAAGAGCTAAGTAAGTTATTT------TCTCTCTCTTA----------------TAAGCAG----AGAA------------------------TAAAA-----AGCGAGG-------------------------------------------------------------------------AAAGGGAGA--------------CAGAAGCAACAAGAGGGAAGAGG------------------------------------------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      63006 154 +    132061 GGGGAAGGTGCTAGTCATCTTCCATTGATCACGTTAT----TTGTTTCTTTT--TGTTTTCAGGGCAATTCCTTGAAGAGCTAAGTAAGTTCTCT------TCTCTCTCTTA----------------TAATCAG----AAAA------------------------TAAAA-----AGCCAGG-------------------------------------------------------------------------AAAGAGAGA--------------CAGAAGCAACAAGA-GGAAAAGG------------------------------------------
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            17258 154 -    110772 GGGGAAGGTGCTAGTCATTTTTCATTGATCACGTTAT----TTGTTTCTCTT--TGTTTTCAGGGCAATTCCTTGAAGAGCTAAGTAAGTTCTCT------TCTCTCTCTTA----------------TAAGCAG----AAAA------------------------TAAAA-----AGCCAGG-------------------------------------------------------------------------AAAGAGAGA--------------CAGAAGCAACAAGA-GGAAAAGG------------------------------------------
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     282008 154 -   1771730 GGGGAAGGTGCTAGTCATTTTCCATTGATCACGTTAT----TTGTTTCTCTT--TGTTTTCAGGGCAATTCATTGAAGAGCTAAGTAAGTTTTCT------TCTCTCTCTTA----------------TAATCAG----AAAA------------------------TTAAA-----AGCCAAG-------------------------------------------------------------------------AAAGAGGGA--------------CAGAAGCAACAAGA-GGAAAAAG------------------------------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     352790 140 -    457564 GGGGAAGGTGCTAGTCATCTTCCATTGATCACGTTAT----TTGTTTCTCTT--TGTTTTCAGGGCAATTCCTTGAAGAGCTAAGTAAGTTCTCT------CCTCTCTCTTA----------------TAATCAG----AAAA------------------------TAAAA--------------------------------------------------------------------------------------------GA--------------CAGAAGCAACAAGA-GGAAAAGG------------------------------------------
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               195600 147 + 123392446 GGGGAAGGAGCTAGTCACCTTCCACCAATCAAC-TAA----TTGTTTCTCTT--TGTTTTCAGGGCAATTCCTTGAAGAGCTAAGTAAG-----T------TCTTTTTCTTA----------------CAAGAGG----AGAG------------------------TAAAA-----AGCCAGG-------------------------------------------------------------------------GAAGGGAGA--------------CAGAT-CAACAAGA-GGAAGAGG------------------------------------------
i micMur3.chr6             I 95 I 293
s proCoq1.NW_012152574v1     656282 148 +    730504 GGGGAAGGAGCTAGTCACCTTCCACTGACCACC-TAA----TTGTTTCTCTT--TGTTTTCAGGGCAATTCCTTGAAGAGCTAAGTAAG-----T------TCTCTTTCTTA----------------CAAGGGG----AGAG------------------------TAAAA-----AGCCAGG-------------------------------------------------------------------------GAAGGGAGA--------------CAGACGCAACAAGA-GGAAGAGG------------------------------------------
i proCoq1.NW_012152574v1   I 1 C 0
s otoGar3.GL873550           162358 148 +  18854210 GGGGAAGAAGCTAATCACCCTCCACTGATGGCC-TAT----TTGTTTC------TGTTTTCAGGGCAATTCCTTGAAGAGCTAAGTAAGTTCTCT------TCTCTTCCTTA----------------TAAGTGG----AGAA------------------------TAAAA-----AGCCAGG-------------------------------------------------------------------------AAAGGGAGA--------------GAAGC-AACTGAGA-GGAAGGGG------------------------------------------
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57975140 266 -  94987271 GGGGGA------------CTCCCACTGACCACC-CATTGACTCATTTCTTTT--TGTTTACAGGACAGTTTCTTGAAGAGCTAAGTAAGTTCTCCCTAACACCCCTCTCCAAtcttgagacatctcattatgcagccttagaacttactatgtaaaccaaactggtctagaa-----actatggcaaccctcttcttgcctccaagtgttaccgtcttaagcacataccattgtacccaacCATTTCCCTCCTTCTAAATCGAACA--------------AAAACCCAGCAAAG-GGAACA--------------------------------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26266022 212 +  26524999 GGGGAGGAACCTAGTCATCTTCCACCAGCCACT-TAT----TCCCTTCTTTTTCTCTTTCCAGGGCAGTTTCTTGAGGAGCTAAGTAAGTT---T------TCTCTTT-TTA----------------TAAGCTG----AGAA------------------------CAAAACAAGAAGGCAGA-------------------------------------------------------------------------AGGGGGGCAGGTAGTGGAGGGACCAGAAGCTCTGAGG-GGCAGGGAGCTGGAGAGTCTGGGGGTGGAGGAGCTGAAGAGCTTGTGGGG
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            87028 3996 +    102524 M

a score=615534.000000
s hg38.chr6_GL000254v2_alt   936175 54 +   4827813 -----------------------------------CGGGCTATTGAGGGATCACATTCCCAGA------GGAAAGGAGGAGCTGGAGAGCCTGGG--
s panTro5.chr6             29898948 54 + 175400573 -----------------------------------CGGGCTATTGAGGGATCACATTCCCAGA------GGAAAGGAGGAGCTGGAGAGCCTGGG--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30132601 54 + 173848474 -----------------------------------CGGGCTATTGAGGGATCACATTCCCAGA------GGAAAGGAGGAGCTGGAGAGCCTGGG--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5932213 54 +   6154872 -----------------------------------CGGGCTATTGAGGGATCACATTCCCAGA------GGAAAGGAGGAGCTGGAGAGCCTGGG--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74649471 54 + 122973662 -----------------------------------GGGGCTATTGAGGGATCACATTCCCAGA------GGAAAGGAGGAGCTGGAGAGCCTGGG--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30132445 54 + 172585720 -----------------------------------GGGGCTATTGAGAGATCACAGTCCCAGA------GGAAAGGAGGAGCTGGAGAGCCTGGG--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29795902 54 - 170955103 -----------------------------------GGGGCTATTGAGAGATCACAGTCCCAGA------GGAAAGGAGGAGCTGGAGAGCCTGGG--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2841474 54 -   2996164 -----------------------------------GGGGCTATTGAGAGATCATAGTCCCAGA------GGAAAGGAGGAGCTGGAGAGCCTGGG--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     590137 54 +    766320 -----------------------------------GGGGCTATTGAGAGATCACAGTCCCAGA------GGAAAGGAGGAGCTGGAGAGCCTGGG--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29047359 54 -  71996105 -----------------------------------GGGGCTATTGAGAGATCACAGTCCCAGA------GGAAAGGAGGAGCTGGAGGGCCTGGG--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     244627 54 +    290775 -----------------------------------GGGGCTATTGAGAGATCACAGTCCCAGA------GGAAAGGAGGAGCTGGAGAGCCTGGG--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2685318 54 -   3067355 -----------------------------------GGGGCTACTGAGAGATCACAGTCCCAGA------GGAAAGGAGGAGCTGGAGGGCCTGGG--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      63160 54 +    132061 -----------------------------------GGGACTGTTGAGGAATCACAGTCCCAGA------GGAAAGGAGGAGCTGGAGAACCTGGA--
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            17412 52 -    110772 -----------------------------------GGGACTGTTGAGGAAT--CAGTCCCAGA------GGAAAGGAGGAGCTGGAGAGCCCCGA--
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     282162 54 -   1771730 -----------------------------------GGGACTGTTGAGGAATCACAGTCCCAGA------GGAAAGGAGGAGCTGGAGAGCCTGGA--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     352930 54 -    457564 -----------------------------------GGGACTGTTGAGGAATCACAGTCTCAGA------GGAAAGGAGGAGCTGGAGAGCCTGGA--
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     656430 51 +    730504 ------------------------------------GGGCTATGGAGGGATCT--GTCCCAGA------GGAAAGGAGTGACTGGAGAGTCTGGG--
i proCoq1.NW_012152574v1   C 0 I 251
s otoGar3.GL873550           162506 51 +  18854210 -------------------------------------GGTTATGGAGGGGCCCCAGTCCCAGA-------GAAAGAAGTGTTTGGAGAGTCTGGG--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57975406 37 -  94987271 ------------------------------------TGGTTACTGAGGGACCATTATCCCAGG------GAA-------GGCTGGA-----------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26266234 97 +  26524999 CGGGGGTGCTAGAGTCTGGGGGGAGGGAGGCTGAAGAGTCTGTGGCGGGGGGGCAGCTAGAGAGTCTTAGGTGGGGGGGAGCTGGAGAGTCTGGGGG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               195747 293 + 123392446 I
e dasNov3.JH582591            87028 3996 +    102524 M

a score=2776772.000000
s hg38.chr6_GL000254v2_alt   936229 262 +   4827813 TGGAGGGAAGACTCCTCCTGG-------------GA-GGTAGAGGGCAAAGAAGCC-----------------AGCTGTTAGAGACACATTTACAGGTGGCAGAGAA----GCTG--GAGGCACTCCTATCTGCCACCTGATCCA------TTCCTC-----------------------CTTCACTGCCCCTAAGCAGGAATCCAACCCTAGCTGGTCTCATTGCCCAT-TCCACAGCAACTGCCCAGTGCCTCACCTCTC----AGATCAACCATTGAggcaggaatggagacaagatgacc-------ccaagggcttttct-tctccctagttcaat
s panTro5.chr6             29899002 262 + 175400573 TGGAGGGAAGACTCCTCCTGG-------------GA-GGTAGAGGGCAAAGAAGCC-----------------AGCTGTTAGAGACACATTTACAGGTGGCAGAGAA----GCTG--GAGGCACTCCTATCTGCCACCTGATCCA------TTCCTC-----------------------CTTCACTGCCCCTAAGCAGGAATCCAACCCTAGCTGGTCTCATTGCCCAT-TCCACAGCAACTGCCCAGTGCCTCACCTCTC----AGATCAACCATTGAggcaggaatggagacaagatgacc-------ccaagggcttttct-tctccttagttcaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30132655 262 + 173848474 TGGAGGGAAGACTCCTCCTGG-------------GA-GGTAGAGGGCAAAGAAGCC-----------------AGCTGTTAGAGACACATTTACAGGTGGCAGAGAA----GCTG--GAGGCACTCCTATCTGCCACCTGATCCA------TTCCTC-----------------------CTTCACTGCCCCTAAGCAGGAATCCAACCCTAGCTGGTCTCATTGCCCAT-TCCACAGCAACTGCCCAGTGCCTCACCTCTC----AGATCAACCATTGAggcaggaatggagacaagatgacc-------ccaagggcttttct-tctccttagttcatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5932267 262 +   6154872 TGGAGGGAAGACTCCTCCTGG-------------GA-GGTAGAGGGCAAAGAGGCC-----------------AGCTGTTAGAGACACATTTACAGGTGGCAGAGAA----GCTG--GAGGCACTCCTATCTGCCACCTGATCCA------TTCCTC-----------------------CTTCACTGCCCCTAAGCAGGAATCCAACCCTAGCTGGTCTCATTGCCCAT-TCCACAGCAACTGCCCAGTGCCTCACCTCTC----AGATCAACCATTGAGTCaggaatggagacaagatgacc-------ccaagggcttttct-tctccttagttcaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74649525 262 + 122973662 TGGAGGGAAGACTCCTCCTGG-------------GA-GGTAGAGGGGAAAGAGGCC-----------------AGCTGTTAGAGACACATTTACAGGTGGCAGAGAA----GCTG--GAGGCACTCCCATCTGCCACCTGATTCA------TTCCTC-----------------------CTTCACTGCCCCTAAGCAGGAATCCCACCCTAGCTGGTCTCATTGCCCAT-TCCACAGCAACTGCCCAGTGCCTCACCTCTC----AGATCGACCATTGAggcaggaatggagacaagatgacc-------caaagggcttttct-tctccctagttcaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30132499 260 + 172585720 TGGAGGGAAGACTCCTCCTGG-------------GA-GGGACAGGGGCAAGAGGCC-----------------AGCTGTT--AGACACATTTACAGGTGGCAGAGAA----GCTG--GAGGCATTCCCATCTGCTGCCTGACCCA------TTCCTC-----------------------CTTCACTGCCCCTAAGCAGGAACCCCACCCTAGCTGGTCTCATTGCCCAT-TCCACAGCAACTGCCCAGTGCCTTGCCTCTC----AGACCAACCACTGAggcaggcatggagacaagatgacc-------ccaagggcttttct-tctccctagttcaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29795956 260 - 170955103 TGGAGGGAAGACTCCTCCTGG-------------GA-GGGACAGGGGCAAGAGGCC-----------------AGCTGTT--AGACACATTTACAGGTGGCAGAGAA----GCTG--GAGGCATTCCCATCTGCTGCCTGACCCA------TTCCTC-----------------------CTTCACTGCCCCTAAGCAGGAACCCCACCCTAGCTGGTCTCATTGCCCAT-TCCACAGCAACTGCCCAGTGCCTTGCCTCTC----AGACCAACCACTGAGGCAGGCATGGAGACAAGATGACC-------CCAAGGGCTTTTCT-TCTCCCTAGTTCAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2841528 260 -   2996164 TGGAGGGAAGACTCCTCCTGG-------------GA-GGGACAGGGGCAAGAGGCC-----------------AGCTGTT--AGACACATTTACAGGTGGCAGAGAA----GCTG--GAGGCATTCCCATCTGCTGCCTGACCCA------TTCCTC-----------------------CTTCACTGCCCCTAAGCAGGAACCCCACCCTAGCTGGTCTCATTGCCCAT-TCCACAGCAACTGCCCAGTGCCTTGCCTCTC----AGACCAACCACTGAggcaggcatggagacaagatgacc-------ccaagggcttttct-tctccctagttcaat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     590191 260 +    766320 TGGAGGGAAGACTCCTCCTGG-------------GA-GGGACAGGGGCAAGAGGCC-----------------AGCTGTT--AGACACATTTACAGGTGGCAGAGAA----GCTG--GAGGCATTCCCATCTGCTGCCTGACCCA------TTCCTC-----------------------CTTCACTGCCCCTAAGCAGGAACCCCACCCTAGCTGGTCTCATTGCCCAT-TCCACAGCAACTGCCCAGTGCCTCGCCTCTC----AGACCAACTATTGAggcaggcatggagacaagatgacc-------ccaagggcttttct-tctccctagttcaat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29047413 260 -  71996105 TGGAGGGAAAACTCCTCCTGG-------------GA-GGGACAGGGGCAAGAGGCC-----------------AGCTGTT--AGACACATTTACAGGTGGCAGAGAA----ACTG--GAGGCATTCCCATCTGCTACCTGGCCCA------TTCCTC-----------------------CTTCACTGCCCCTAAGCAGGAACCCCACCCTAGCTGGTCTCATTGCCCAT-TCCACAGCAACTGCCCAGTGCCTCGGCTCTC----AGACCAACCACTGAggcaggcatggagacaagatgact-------ccaagggcttttct-tctccctagttcaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     244681 260 +    290775 TGGAGGGAAGACTCCTCCTGG-------------GA-GGGACAGGGGCAAGAGGCC-----------------AGCTGTT--AGACACATTTACAGGTGGCAGAGAA----ACTG--GAAGCATTCCCATCTGCTGCCTCACCCA------TTCCTC-----------------------CTTCACTGCCCCTAAGCAGGAACCCCACCCTAGCTGGTCTCATTGCCCAT-TCCACAGCAACTGCTCAGTGCCTCGCCTCTC----AGACCAACCACTGAggcaggcatggagacaagatgacc-------ccaagggcttttct-cctccctagttcaat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2685372 260 -   3067355 TGGAGGGAAGACTCCTCCTGG-------------GA-GGTACAGGGGCAAGAGGCC-----------------AGCTGTT--AGACACATTTACAGGTGGCAGAGAA----GCTG--GAGGCATTCCCATCTGCTGCCTGACCCA------TTCCTC-----------------------CTTCACTGCCCCTAAGCAGGAACCCCACCCTAGCTGGTCTCATTGCCCAT-TCCACAGCAACTGCCCAGTGCCTCGCCTCTC----AGACCAACCATTGAggcaggcatggagacaagatgacc-------ccaagggcttttct-tctccctagttcaat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      63214 253 +    132061 GGGAGGGAGAACTCCTCCTGG-------------GA-GGTAGAGGGGAAAGAGGCC-----------------AGTTGTT--AGACACATTTACAGCTGACAGAGAA----GCTG--GAGGCA-------CTGCTGCCTGATCTG------TTCCTC-----------------------CTTCACTGCTCCTAAGCAGGAATCCCACCCTAGCTGTTCTCATTGCCCAT-TCCACAGCAACTGCCCAGTGCCTCACCTCTA----AGACCAACCATTGAGGCAGGCATGGAGACGAAATAACC-------CCAAGGGCTATTCT-TCTCCCTAGTTCAAT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            17464 250 -    110772 GGGAGGGAGAACTCCTCCTGG-------------GA-GGTAGAAGGGAAAGAGGCC-----------------AGTTGTT--AGATACATTTACAGCTGACAGAGAA----GCTG--GAGGCA-------CTGCTGCCTGATC---------TCCTC-----------------------CTTCACTGTTCCTAAGCAGGAATCCCACCCTAGCTGTTCTCATTGCCCAT-TTCACAGCAACTGCCCAGTGCCTCACCTCTA----AGACCAACCATTGAGGCAGGCATGGAGACAAAATAACC-------CCAAAGGCTTTTCT-TCTCCCTAGTTCAAT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     282216 253 -   1771730 GGGAGGGAGAACTCCTCCTGG-------------GA-GGTAGGGGGGAAAGAGGCC-----------------AGTTGTT--AGACACATGTACAGCTGACAGAGAA----ACTG--GAGGCA-------CTACTGCCTGATCTG------TTCCTC-----------------------CTTCACTGCTCCTAAGCAGGAATCCCACCCTAGCTGTTCTCATTGCCCAT-TCCACAGCAACTGCCCAGTGCCTCACCTCTA----AGACCAACCATTGAGGCGGGCATGGAGACAAAATAACC-------CCAAGGGCTTTTCT-TCTCCCTAGTTCAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     352984 252 -    457564 GGGAGGGAGAACTCCTCCTGG-------------GA-GGTAGAGGGAAAAGAGGCC-----------------AGTGGTT--AGACACATTTACAGCTGACGGAGAA-----CTG--GAGGCA-------CTGCTGCCTGATCTG------TTCCTC-----------------------CTTCACTGCTCCTAAGCAGGAATCCCACCCTAGCTGTTCTCATTGCCCAT-TCTACAGCAACTGCCCAGTGCCTCACCTCTA----AGACCAACCACTGAGGCAGGCATGGAGACAAAATAACC-------CCAAGGGCTTTTCT-TCTCCCTAGTTCAGT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           162557 228 +  18854210 ----GGGA-----------GG-------------GA-GGTAAAAGG-AAGGAGGCT-----------------AGCTATTGGTGACATGTTGAAGGGTGGCAGAGAAGGAAGCTG--CA-GCACTCCCGCCTGCAGCTCCATTTG------CTCCAC-----------------------CATTAGTG--CCTATGCAG------------------TCTCCCTTCCCAT-TCCACCACAGCTGCCCTGTGTCCCACCTCCA----GAGCCAGTTGCCAAG-TGGGCACAGAGACAAGATAACC-------CCAAGGACTTTTCA-TCTCCCTGATTCAAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57975443 252 -  94987271 -------ATGACTCCTCTTGT-------------GAGGGGAAAAGGGGAGGGAATT-----------------AACG-----AGACACATTTTCAG-TGCCAGAGAG----GCTGCTGAGCCACTCTTACCTGTTGACTTAATAG-----------C-----------------------CTTTAGTGCCCCTGAGCCAGAATTCCACTTCTGCAGCCCCCTTTAACATTCTCCATAATAGTTATCCCGAACCTCACCTCCCTCCAAGACCAACCA-GGCGGTTGGGGGAGAGATCACATGACC-------CCTAGGAACTTTCTATCTCCTAGGTTCAAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26266331 306 +  26524999 TGGAGGAGCTGAAGCTTGTGGGGCGGGGGTGCTAGA-GTTTGGGGGGAGGGAGGCTGAAGAGTCTGTGGGGGGGGCAGCT--AGAGAGTCTT--AGGTGG-GGGGGA----GCTG--GAGA--------------GCCTGGCTGGCAGAGGCTCCTCCTGTAAGGCAGAAGGGGAGGGCACTCCAATGCCC---AGCCTAACCCCCACTTTGGCTGCTTCCCTTCCCACC-CATCCAGCAGCTGTGTTGGGCCTCAGCTGTG----AGACCAGCCCCTGAGGTGGGTGCAGAGGCAACAACACTCTCCCTGCCCAGGGCTGTTCC-TCTCCAAGGATTAAT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               195747 293 + 123392446 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     656481 251 +    730504 I

a score=323564.000000
s hg38.chr6_GL000254v2_alt   936491 30 +   4827813 ggttttaTGATACAAA-CTACTGACATACGT
s panTro5.chr6             29899264 30 + 175400573 ggttttaTGATACAAA-CTACTGACATACGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30132917 30 + 173848474 ggttttaTGATACAAA-CTACTGACATACGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5932529 30 +   6154872 ggttttaTGATACAAA-CTACTGACATACGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74649787 30 + 122973662 ggttttaTGATACATA-CTACTGACATAGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30132759 30 + 172585720 ggttttaTGATACAAA-CTACCGACATAGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29796216 30 - 170955103 GGTTTTATGATACAAA-CTACCGACATAGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2841788 30 -   2996164 ggttttaTGATACAAA-CTACCGACATAGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     590451 30 +    766320 ggttttaTGATACAAA-CTATTGACACAGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29047673 30 -  71996105 ggttttaTGATACAAA-CTACTGACATAGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     244941 30 +    290775 ggttttaTGATACAAA-CTACTGACATAGAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2685632 30 -   3067355 ggttttaTGATACAAA-CTACTGACATAGAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      63467 26 +    132061 GGTTTTGTGAT----A-TTACTGACATCAAT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            17714 30 -    110772 GGTTTTATGATACAAA-CTACTGACATTGAT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     282469 30 -   1771730 GGTTTTATGATACAAA-GTACTGACATCGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     353236 30 -    457564 GGTTTTATGATACAAA-CTACTGACAGCGAT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     656732 28 +    730504 GGTTTCATGATAGAAA-CTACTGACAGAC--
i proCoq1.NW_012152574v1   I 251 C 0
s otoGar3.GL873550           162785 30 +  18854210 AGTTTCATGATAGAAA-CCACTGGCATAGAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57975695 31 -  94987271 GACTTCATAAAAAGAACCTACTGGCAGAGGT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26266637 19 +  26524999 -GTCTTG----------GCAGTGACAGATG-
i canFam3.chr35            C 0 C 0
e micMur3.chr6               195747 293 + 123392446 I
e dasNov3.JH582591            87028 3996 +    102524 M

a score=3397994.000000
s hg38.chr6_GL000254v2_alt   936521 215 +   4827813 TTTTCAAGTTATTTTCTCCTTCTTCTAGGAAATCCCTTCTGAGTGAT-GTCACATCTTGGCAGGGGTGGAGGAGAGCCTGGTT-GCCCAGGGATTTGTCCTTGGGGACATCTCATCCATCAAGTTGCACACTCACTGGCATCTTTGCTATGGGGACATTCCAATTTGCACTTTCAGGAACACTCTGAATTCCAAGTAGAA-TTGATTTCCCTTCTTCT
s panTro5.chr6             29899294 215 + 175400573 TTTTCAAGTTATTTTCTCCTTCTTCTAGGAAATCCCTTCTGAGTGAT-GTCACATCTTGGCAGGGGTGGAGGAGAGCCTGGTT-GCCCAGGGATTTGTCCTTGGGGACATCTCATCCATCAAGTTGCACACTCACTGGCATCTTTGCTATGGGGACATTCCAATTTGCACTTTCAGGAACACTCTGAATTCCAAGTAGAA-TTGATTTCCCTTCTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30132947 215 + 173848474 TTTTCAAGTTATTTTCTCCTTCTTCTAGGAAATCCCTTCTGAGTGAT-GTCACATCTTGGCAGGGGTGGAGGAGAGCCTGGTT-GCCCAGGGATTTGTCCTTGGGGACATCTCATCCATCAAGTTGCACACTCACTGGCATCTTTGCTATGGGGACATTCCAATTTGCACTTTCAGGAACACTCTGAATTCCAAGTAGAA-TTGATTTCCCTTCTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5932559 215 +   6154872 TTTTCAAGTTATTTTCTCCTTCTTCTAGGAAATCCCTTCTGAGTGAT-GTCACATCTTGGCAGGGGTGGAGGAGAGCCTGGTT-GCCCAGGGATTGGTCCTTGGGTATATCTCATCCATCAAGTTGCACACTCACTGGCATCTTTGCTATGGGGACATTCCAATTTGCACTTTCAGGAACACTCTGAATTCCAAGTAGAA-TTGATTTCCCTTCTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74649817 215 + 122973662 TTTTCAAGTTATTTTCTCCTTCTTCTAGGAAATCCCTTCTGAGTGAT-GTCACATCTTGGCAGGGGTGGAGGAGAGCCTGGTT-GCCCAGGGATTGGTCCTTGGGGACATCTCATCCATCAAGTTGCACACTCACTGGCATCTTTGCTATGGGGACATTCCAATTTGCACTTTCAGGAACACTCTGAATTCCAAGTAGAA-TTGATTTCCCTTCTTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30132789 215 + 172585720 TTTTCAAGTTATTTTTTCCTTCTTCTAGGAAACCCTTTCTGAGTGAT-GTCACATCTTGGCAGGGGTGGAGGAGAGCCTGGTT-GCCCAGGGATTGGTCCTTGGGGACATCTCATCCATCAAGTTGCATACTCACTGGCATCTTTGCTATGGGGACATTCCAATTTGCACTTTCAGGAACACTCTGAATTCCAAGTAGAA-TTGATTTCCCTTCTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29796246 215 - 170955103 TTTTCAAGTTATTTTTTCCTTCTTCTAGGAAACCCTTTCTGAGTGAT-GTCACATCTTGGCAGGGGTGGAGGAGAGCCTGGTT-GCCCAGGGATTGGTCCTTGGGGACATCTCATCCATCAAGTTGCATACTCACTGGCATCTTTGCTATGGGGACATTCCAATTTGCACTTTCAGGAACACTCTGAATTCCAAGTAGAA-TTGATTTCCCTTCTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2841818 215 -   2996164 TTTTCAAGTTATTTTTTCCTTCTTCTAGGAAACCCTTTCTGAGTGAT-GTCACATCTTGGCAGGGGTGGAGGAGAGCCTGGTT-GCCCAGGGATTGGTCCTTGGGGACATCTCATCCATCAAGTTGCATACTCACTGGCATCTTTGCTATGGGGACATTCCAATTTGCACTTTCAGGAACACTCTGAATTCCAAGTAGAA-TTGATTTCCCTTCTTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     590481 215 +    766320 TTTTCAAGTTATTTTTTCCTTCTTCTAGGAAACCCTTTCTGAGTGAT-GTCACATCTTGGCAGGGGTGGAGGAGAGCCTGGTT-GCCCAGGGATTGGTCCTTGGGGACATCTCATCCATCAAGTTGCATACTCACTGGCATCTTTGCTATGGGGACATTCCAATTTGCACTTTCAGGAACACTCTGAATTCCAAGTAGAA-TTGATTTCCCTTCTTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29047703 215 -  71996105 TTTTCAAGTTATTTTTTCCTTCTTCTAGGAAATCCTTTCTGAGTGAT-GTCACATCTTGGCAGGGGTGGAGGAGAGCCTGGTT-GCCCAGGGATTGGTCCTTGGGGACATCTCATCCATCAAGTTGCATACTCACTGGCATCTTTGCTATGGGGACATTCCAATTTGCACTTTCAGGAACACTCTGAATTCCAAGTAGAA-TTGATTTCCCTTCTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     244971 215 +    290775 TTTTCAAGTTATTTTTTCCTTCTTCTAGGAAACCCTTTCTGAGTGAT-GTCACATCTTGGCAGGGGTGGAGGAGAGCCTGGTT-GCCCAGGGATTGGTCCTTGGGGACATCTCATCCATCAAGTTGCATACTCACTGGCATCTTTGCTATGGGGACATTCCAATTTGCACTTTCAGGAACACTCTGAATTCCAAGTAGAA-TTGATTTCCCTTCTTCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2685662 215 -   3067355 TTTTCAAGTTATTTTTTCCTTCTTCTAGGAAATCCTTTCTGAGTGAT-GTCACATCTTGGCAGGGGTGGAGGAGAGCCTGGTT-GCCCAGGGATTGGTCCTTGGGGACATCTCATCCATCAAGTTGCATACTCACTGGCATCTTTGCTATGGGGACATTCCAATTTGCACTTTCAGGAACACTCTAAATTCCAAGTAGAA-TTGATTTCCCTTCTTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      63493 211 +    132061 TTTTCAAGTTATTTTCTCCTTCTTCTAGGAAATCCCTTCTGAATGGT-GTCGCATCTTGGCAGGGGTGGAGGAGAGCCTGGTT-GCCCAGGGATTGGTCCTTGGGGATGTCTCATCCATCAAGTTGCACACTCACTGGCATATTTGCTATGGGGACATTCCAATTTGCACTTCCA-GAACACTCTGAATTCCAAGGAGAA-TTGATTTCC---CTTCT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            17744 211 -    110772 TTTTCAAGTTATTTTCTTTTTCTTCTAGGAAATCCCTTCTGAATGAT-GTCGCATCTTGGCAGGGGTGGAGGAGAGCCTGGTT-GCCCAGGGATTGGTCCTTGGGGATGTCTCATCCTTCAAGTTGCACACTCACTGGCATCTTTGCTCTGGGGACATTCCAATTTGCACTTCCG-GAACACTCTGGATTCCAAGTAGAA-TTGATTTCG---CTTCT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     282499 211 -   1771730 TTTTCAAGTTATTTTCTCCTTCTTCTAGGAAATCCCTTCTGAATGAT-GTCGCATCTTGGCAGGGGTGGAGGAGAGCCTGGTT-GCCCAGGGATTGGTCCTTGGGGATGTCTCATCCATCAAGTTGCACACTCATTGGCATCTTTGCTATGGGGACATTCCAATTTGCACTTCCA-GAACACTCTGAATTCCAAGTAGAA-TTGATTTCC---CTTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     353266 211 -    457564 TTTTCAAGTTATTTTCTCCTTCTTCTAGGAAATCCCTTCTGAATGAT-GTCGCATCTTGGCAGGGGTGGAGGAGAGCCTGGTT-GCCCAGGGATTGGTCCTTGGGGATGTCTCATCCATCAAGTTGCACACTCACTGGCATCTTTGCTATGGGGACATTCCAATTTGCACTTCTA-GAACACTCTGAATTCCAAGTAGAA-TTGATTTCC---CTTCT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               196040 216 + 123392446 TTTTCATGTTACTTTTTCTTTCTTCTAGGAAACCCCTTCTGAGTGAT-GTCACATCTTGGCAGGGGTGGAGGAAAGCCTGGTTGGTCCAAGGATTGGTCCTTGGGGATGTCTCATTCATCAAGTTGCACATTCACTGGCATCTTTGCTGTGAGGACTTCCCAATCTGCACTTCCAGGAACACTCTGAATTCCAAATCGAT-TTGATTTCCCTTCTTCT
i micMur3.chr6             I 293 C 0
s proCoq1.NW_012152574v1     656760 215 +    730504 TTTTCGCGTTACTTTGTCTTTCTTCCAGGAAACCCCTTCTGAGTGAT-GTCACATCTTGGCTGGGGTGGAGGAGAGCCTGGCTGGCCCAAGGATTGATCCTTGGGGACGTCACATCCATCAAGTTGCACACTCACTGGCATCTTTGCTGTGGGGACTTCCCAATCTGCACTTCCAGGAACACTCTGAATTCCAAATAGAT-TTGA-TTCCCTTCTTCT
i proCoq1.NW_012152574v1   C 0 I 79
s otoGar3.GL873550           162815 216 +  18854210 TTTTCACTTTATTTTCTCTTCCTTCTAGGAAACCCCTTCTGAGTGAT-GTCACATCTTGGCAGGGGTGGAAGAGAGCCTGGTTGGTTCAGGGACTGGTCCTTGAGGACATCTCGTCCATCAAGTTGCACACTCACTGGCATCTTTGCTGTGGGGAGATCCCAGTCTGTACTTCCAGGAACACTCTGAATTCTAAATAGAA-TTGACTTCTCTTCCTTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57975726 185 -  94987271 TTTTAAAGTCACTTGTCTGTCTTTCCAGGAAACCCCTTTTGAGTGATGGTTGTGTCTTCCTGGAGCGGAAGGAGAGCCCAGCA------------GGTCCTTGGGGATTTCCCAT--------------------TGGCCTCTTTGCTGTGGACAGATTCCAATCTACATCTACAGACACATTCTGGATACCGAGTAGAACTTGATTTCCCTCCCTC-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26266656 201 +  26524999 -TTTCAAGTTACTTTTTCCTCCTT-TAGGAAACCCCTTCTGAGTGAT-GC--TATCTTGGCAAGGGTGGAGGACAGCCTGCTCGGTCCAAGGACTGACCTCAGGG--CCTGGCACCCACCAAGTCCTACACTCACAGACCTCCTCACTACGGGGCA--TCCAATCTGCATTTCCAGGAATGCTCTGAATTCCAAATGGGA-CTGAGTTCTC-------
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            87028 3996 +    102524 M

a score=10000.000000
s hg38.chr6_GL000254v2_alt   936736 1 +   4827813 G
s panTro5.chr6             29899509 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30133162 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5932774 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74650032 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30133004 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29796461 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2842033 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     590696 1 +    766320 G
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29047918 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     245186 1 +    290775 G
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2685877 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      63704 1 +    132061 G
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            17955 1 -    110772 G
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     282710 1 -   1771730 G
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     353477 1 -    457564 G
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               196256 1 + 123392446 G
i micMur3.chr6             C 0 I 71
e mm10.chr17               57975911 0 -  94987271 C
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     656975 79 +    730504 I
e canFam3.chr35            26266857 0 +  26524999 C
e otoGar3.GL873550           163031 0 +  18854210 C

a score=738902.000000
s hg38.chr6_GL000254v2_alt   936737 68 +   4827813 TCATCTACCTTTTCT----CTTCATTTTCCCATTTTTA--TTACCCTTCTTTCCATTTCTCTCTCCAGTCTTCC
s panTro5.chr6             29899510 68 + 175400573 ACATCTACTTTTTCT----CTTCATTTTCCCATTTTTA--TTACCCTTCTTTCCATTTCTCTCTCCAGTCTTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30133163 68 + 173848474 ACATCTACTTTTTCT----CTTCATTTTCCCATTTTTA--TTACCCTTCTTTCCATTTCTCTCTCCAGTCTTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5932775 72 +   6154872 TCATCTACCTTTTCTCTTCCTTCATTTTCCCATTTTTA--TTACCCTTCTTTCCATTTCTCTCTCCAGTCTTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74650033 72 + 122973662 TCATCTACCTTTTCTCTTCCTTCATTTTCCCATTTTTA--TTACCCTTCTTTCCATTTCTCTCTCCAGTCTTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30133005 72 + 172585720 TCATCTACCTTTTCTCTTCCTTCATTTTCCCATTTTTA--TTATCCTTCTTTCCATTTCTCTCTCCAGTCTTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29796462 72 - 170955103 TCATCTACCTTTTCTCTTCCTTCATTTTCCCATTTTTA--TTATCCTTCTTTCCATTTCTCTCTCCAGTCTTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2842034 72 -   2996164 TCATCTACCTTTTCTCTTCCTTCATTTTCCCATTTTTA--TTATCCTTCTTTCCATTTCTCTCTCCAGTCTTCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     590697 72 +    766320 TCATCTACCTTTTCTCTTCCTTCGTTTTCCCATTTTTA--TTATCCTTCTTTCCATTTCTCTCTCCAGTCTTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29047919 72 -  71996105 TCATCTACCTTTTCTCTTCCTTCGTTTTCCCATTTTTA--TTATCCTTCTTTCCGTTTCTCTCTCCAGTCTTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     245187 72 +    290775 TCATCTACCTTTTCTCTTCCTTCGTTTTCCCATTTTTA--TTATCCTTCTTTCCATTTCTCTCTCCAGTCTTCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2685878 72 -   3067355 TCATCTACCTTTTCTCTTCCTTTGTTTTCCCATTTTTA--TTATCCTTCTTTCCATTTCTCTCTCCAGTCTTCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      63705 72 +    132061 TCATCTACTTTTTCTCTTTCTTCCTTTTCCCGTTTTTA--TTACCCATCTTTCTATTTCTCTCTCCAGTCTTCC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            17956 72 -    110772 TCATCTACCTTTTCTCTTCCTTCTTTTTCCCATTTTTA--TTACCAATCTTTCCATTTCTCTCTCCAGTCCTCC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     282711 72 -   1771730 TCATCTACCTTTTCTCTTCCTTCTTTTTCCCATTTTTA--TTACCAATCTTTCCATTTCTCTCTCCAGTCCTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     353478 72 -    457564 TCATCTACCTTTTCGCTTCCTTCCTTTTCCCATTTTTA--TTACCCATCTTTCCATTTCTCTCTCCAGTCTTCC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           163031 64 +  18854210 ----CTCCAGATCCT--TCCTTCCTTTTCCCCTTTTGC--CACCACATCTTTCCACTCCTCCCTT--GTCTCCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57975911 68 -  94987271 --AACTGTCTTTCCTCAG-CTCCTTCCTCTAATTTTTGACTTCCACATCTTT---TTTACCATGTTAGTCTGAC
i mm10.chr17               C 0 I 1
s canFam3.chr35            26266857 45 +  26524999 --------------------------TTCCCCTTTTTC--ACAGCCCACACCTCTCTACTCTCTT-ACTCTTCC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               196257 71 + 123392446 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     656975 79 +    730504 I

a score=22325.000000
s hg38.chr6_GL000254v2_alt   936805 2 +   4827813 AC
s panTro5.chr6             29899578 2 + 175400573 AC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30133231 2 + 173848474 AC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5932847 2 +   6154872 AC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74650105 2 + 122973662 AC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30133077 2 + 172585720 AC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29796534 2 - 170955103 AC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2842106 2 -   2996164 AC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     590769 2 +    766320 AC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29047991 2 -  71996105 AC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     245259 2 +    290775 AC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2685950 2 -   3067355 AC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      63777 2 +    132061 AC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            18028 2 -    110772 CC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     282783 2 -   1771730 AC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     353550 2 -    457564 AC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     657054 2 +    730504 AC
i proCoq1.NW_012152574v1   I 79 C 0
s otoGar3.GL873550           163095 2 +  18854210 AC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57975980 1 -  94987271 A-
i mm10.chr17               I 1 C 0
s canFam3.chr35            26266902 2 +  26524999 AC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               196257 71 + 123392446 I
e dasNov3.JH582591            87028 3996 +    102524 M

a score=565505.000000
s hg38.chr6_GL000254v2_alt   936807 35 +   4827813 CTGGAAGCCCTCTCTGGCTAAGGACAGGCAGGTGC
s panTro5.chr6             29899580 35 + 175400573 CTGGAAGCCCTCTCTGGCTAAGGACAGGCAGGTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30133233 35 + 173848474 CTGGAAGCCCTCTCTGGCTAAGGACAGGCAGGTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5932849 35 +   6154872 CTGGAAGCCCTCTCTGGCTAAGGACAGGCAGGTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74650107 35 + 122973662 CTGGAAGCCCTCTCTGACTAAGGACAGGCAGGTGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30133079 35 + 172585720 TTGGAAACCCTTCCTGGCTAAGGACAGGCAGGTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29796536 35 - 170955103 TTGGAAACCCTTCCTGGCTAAGGACAGGCAGGTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2842108 35 -   2996164 TTGGAAACCCTTCCTGGCTAAGGACAGGCAGGTGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     590771 35 +    766320 TTGGAAACCCTTCCTGGCTAAGGACAGGCAGGTGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29047993 35 -  71996105 TTGGAAACCTTTCCTGGCTAAGGACAGGCAGGTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     245261 35 +    290775 TTGGAAACCCTTCCTGGCTAAGGACAGGCAGGTGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2685952 35 -   3067355 TTGGAAACCCTTCCTGGCTAAGGACAGGCAGGTGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      63779 35 +    132061 CTGGAAGCCCTCTCTGGCTAAGGACAGGCAGGTGC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            18030 35 -    110772 CTGGAAGTCCTCTCTGGCTAAGGACAGGCAGGTGC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     282785 35 -   1771730 CTGGAAGCCCTCTCTGGCTAAGGACAGGCAGGTGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     353552 35 -    457564 CTGGAAGCCCTCTCTGGCTAAGGACAGGCAGGTGC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               196328 35 + 123392446 CTGGAAGTCCTCTCTGGCTAAGGCCAGGCAGGTGC
i micMur3.chr6             I 71 I 449
s proCoq1.NW_012152574v1     657056 35 +    730504 CTGGAAGCCCTCCCTGGCTAGGGACAGGCAGGTGC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           163097 35 +  18854210 CTTGAAGCCCTCTCTGGTTAAAGACAGGCAGGTGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57975981 31 -  94987271 TAGAAAACACCCTGTGGTGAAGGCCAGGCAG----
i mm10.chr17               C 0 C 0
s canFam3.chr35            26266904 35 +  26524999 CTGGAAGCCCTCCATGGCCATGGCCAGGCAGGCAC
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            87028 3996 +    102524 M

a score=2207397.000000
s hg38.chr6_GL000254v2_alt   936842 164 +   4827813 CCCTCTCTCCATCAGAGGACACCTGTACTGGAGAGCAACAC----AGGATGGTCTCTGCCATGAACTGGAGGCCAGGAATCTCCTCAC-------TGAAAATTACAGTATGGTAACTTTGCAAATGGTGGTTGTTTCTTCCAAGACTCCAGCCCTGATTGC-GCAAAACTGAAAGG
s panTro5.chr6             29899615 164 + 175400573 CCCTCTCTCCATCAGAGGACATCTGTACTGGAGAGCAACAC----AGGATGGTCTCTGCCATGAACTGGAGGCCAGGAATCTCCTCAC-------CGAAAATTACAGTATGGTAACTTTGCAAATGGTGGTTGTTTCTTCCAAGACTCCAGCCCTGATTGC-GCAAAACTGAAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30133268 164 + 173848474 CCCTCTCTCCATCAGAGGACATCTGTACTGGAGAGCAACAC----AGGATGGTCTCTGCCATGAACTGGAGGCCAGGAATCTCCTCAC-------CGAAAATTACAGTATGGTAACTTTGCAAATGGTGGTTGTTTCTTCCAAGACTCCAGCCCTGATTGC-GCAAAACTGAAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5932884 164 +   6154872 CCCTCTCTCCATCAGAGGACACCTGTACTGGAGAGCAACAC----AGGATGGTCTCTGCCATGAACTGGAGGCCAGGAATCTCCTCAC-------TGAAAATTACAGTATGGTAACTTTGCAAATGGTGGTTGTTTCTTCCAAGACTCCAGCCCTGATTGC-GCAAAACTGAAAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74650142 164 + 122973662 CCCTCTCTCCATCAGAGGACACCTGTACTGGAGAGCAACAC----AGGATGGTCTCTGCCATGAACTGGAGGCCAGGAATCTCCTCAC-------TGAAAATTACAGTATGATAACTTTGCAAATGGTGGTTGTTTCTTCCAAGACTCCAGCCCTGATTGC-GCAAAACTGAGAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30133114 168 + 172585720 CCCTCTCTCCATCAGAGGACACCTGTGCTGGAGAGCAACACAGATAGGATGGTCTCTGCCATGAACTGGAGGCCAGGAACCTCCTCAC-------TGAAAATTACAGTATGATAACTTTGCAAATGGTGGTTGTTTCTTCCAAGACTCCAGCCCTGATTGC-GCAGAACTGAGAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29796571 168 - 170955103 CCCTCTCTCCATCAGAGGACACCTGTGCTGGAGAGCAACACAGATAGGATGGTCTCTGCCATGAACTGGAGGCCAGGAACCTCCTCAC-------TGAAAATTACAGTATGATAACTTTGCAAATGGTGGTTGTTTCTTCCAAGACTCCAGCCCTGATTGC-GCAGAACTGAGAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2842143 168 -   2996164 CCCTCTCTCCATCAGAGGACACCTGTGCTGGAGAGCAACACAGATAGGATGGTCTCTGCCATGAACTGGAGGCCAGGAACCTCCTCAC-------TGAAAATTACAGTATGATAACTTTGCAAATGGTGGTTGTTTCTTCCAAGACTCCAGCCCTGATTGC-GCAGAACTGAGAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     590806 168 +    766320 CCCTCTCTCCATCAGAGGACACCTGTGCTGGAGAGCAACACAGATAGGATGGTCTCTGCCATGAACTGGAGGCCAGGAACCTCCTCAC-------TGAAAATTACAGTATGATAACTTTGCAAATGGTGGTTGTTTCTTCCAAGACTCCAGCCCTGATTGC-GCAGAACTGAGAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29048028 168 -  71996105 CCCTCTCTCCATCAGAGGACACCTGTGCTGGAGAGCAACACAGATAGGATGGTCTCTGCCATGAACTGGAGGCCAGGAACCTCCTCAC-------TGAAAATTACAGTATGAGAACTTTGCAAATGGTGGTTGTTTCTTCCAAGACTCCAGCCCTGATTGC-GCAGAACTGAGAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     245296 168 +    290775 CCCTCTCTCCATCAGAGGACACCTGTGCTGGAGAGCAACACAGATAGGATGGTCTCTGCCATGAACTGGAGGCCAGGAACCTCCTCAC-------TGAAAATTACAGTATGATAACTTTGCAAATGGTGGTTGTTTCTTCCAAGACTCCAGCCCTGATTGC-GCAGAACTGAGAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2685987 168 -   3067355 CCCTCTCTCCATCAGAGAACACCTGTGCTGGAGAGCAACACAGATAGGATGGTCTCTGCCATGAACTGGAGGCCAGGAACCTCCTCAC-------TGAAAATTACAGTATGATAACTTTGCAAATGGTGGTTGTTTCTTCCAAGACTCCAGCCCTGATTGC-GCAGAACTCAGAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      63814 168 +    132061 TCCTCTCTCCATCAGAGGACATCTGTGCTGGAGAGCTACACAGATAGGATGGTCTTTGTCACTAACTGGAGGCCAGGAACCTCCTCAC-------TGAAAATTACAGTATGATAACTTTGCAAATGGTGGTTGTTTCCTCCAAGACTCCAGCCCTGATTGC-GCAGAACTGAAATG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            18065 168 -    110772 TCCTCTCTCCATCAGAGGACATCTTTGCTGGAAAGCAACACAGATAGGATGGTCTTTGTCACAAACTGGAGGCCAGGAACCTCCTTAC-------TGAAAATTACAGTATGATAACTTTGCAGATGGTGGTTGTTTCCTCCAAGACTCCAGCCCTGATTGC-GCAGAACTGAGATG
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     282820 168 -   1771730 TCCTCTCTCCATCAGAGGACATCTTTGCTGGAAAGCAACACAGATAGGATGGTCTTTGTCACAAACTGGAGGCCAGAAACCTCCTCAC-------TGAAAATTACAGTATGATAACTTTGCAAATGGTGGTTGTTTCCTTCGAGACTCCAGCCCTGATTGC-GCAGAACTGAGATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     353587 168 -    457564 TCCTCTCTCCATCAGAGGACATCTGTGCTGGACAGCAACACAGATAAGATGGTCTTTGCCACGAACTAGAGGCCAGGAACCTCCTCAC-------TGAAAATTACAGTATGATAACTTTGCAAATGGTGGTTGTTTCTTCCAAGACTCCAGCCCTGATTGC-GCAGAACTGAGATG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     657091 163 +    730504 ---TCCCTTGGTCTGAGGACGCCTGTGCTGGAGACTG--ACAGACAGGAGGGCCTCTGCCATGAGCTGCAGACCAGGGACGTCCTCGC-------TGAAGATTGCAGCATGCCAACTCTGCAGACGGGGGTGGTTTTTTCCGAGACCCCCGCCCTGACTGG-GCAGAGCTGAAAGG
i proCoq1.NW_012152574v1   C 0 I 255
s otoGar3.GL873550           163132 169 +  18854210 TCCTCACTCCATCTGAGGACATCTGTCCTGGAGACTAACACAGATAGGAGGGCCTCTGCTATGAACTAGAGTGTAAGAACCTCCTCAC-------TGCAAATTATAGCATGCCAACTTTACAAATAGCAGTTGTTTTTTCCAAGACCCTAGTCCTGATTGGTGTAGAGCTGAAAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57976012 155 -  94987271 -------TCTATCAGGAGACACCTATGCACCAGAGTAATAC----AGGAGTGATTCTGCCA--ACCAGGATACGCAGCACTTCATCAT-------TGTGAACTATAGAACATCAACTCTGCAAATGGTGGATATTTCTTCCAAGACCACAGCCTTGACTGG-GAAGAATATCAATG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26266939 138 +  26524999 CCCTCTCTCTG---ATGGATACCTGTGCTGGACAGTGACACAGGCAGGA--------------------AGGTCGAGCACCTCCCCACCCCCCATTGCAAATTCCAACATGCCAACTTCAGATATGGTGGTTGTTTACTCTAAGATGTCAGTCCTGAGAGG---------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               196363 449 + 123392446 I
e dasNov3.JH582591            87028 3996 +    102524 M

a score=1873570.000000
s hg38.chr6_GL000254v2_alt   937006 173 +   4827813 CATGT--------GAAGGGAAGGAAGAG-----GAAGAGTGC-AAAACATTGAAGAGAGAGCTGAG----TGAGCTGAAGAGTGAGGATATGAGTAGCCCCAACCCAAACCTGGAGATGGGGAGAAACCTACAGAATACTAGCCAGAG---CTCCTCCTTGTCTTGGCAGCCTACTAG--GGACCTGGGGAAGCAA
s panTro5.chr6             29899779 173 + 175400573 CATGT--------GAAGGGAAGGAAGAG-----GAAGAGTGC-AAAACATTGAAGAGAGAGCTGAG----TGAGCTGAAGAGTGAGGATATGAGTAGCCCCAACCCAAACCTGGAGATGGGGAGAAACCTACAGAATACTAGCCAGAG---CTCCACCTTGTCTTGGCAGCCTACTAG--GGACCTGGGGAAGCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30133432 173 + 173848474 CATGT--------GAAGGGAAGGAAGAG-----GAAGAGTGC-AAAACATTGAAGAGAGAGCTGAG----TGAGCTGAAGAGTGAGGATATGAGTAGCCCCAACCCAAACCTGGAGATGGGGAGAAACCTACAGAATACTAGCCAGAG---CTCCACCTTGTCTTGGCAGCCTACTAG--GGACCTGGGGAAGCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5933048 174 +   6154872 CATGT--------GAAGGGAAGGAAGAG-----GAAGAGTGCAAAAACATTGAAGAGAGAGCTGAG----TGAGCTGAAGAGTGAGGATATGAGTAGCCCCAACCCAAACCTGGAGATGGGGAGAAACCTACAGAATACTAGCCAGAG---CTCCACCTTGTCTTGGCAGCCTACTAG--GGACCTGGGGAAGCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74650306 173 + 122973662 CATGT--------GAAGGGAAGGAAGAG-----GAAGAGTGC-AAAACATTGAAGAGAGAGCTGAG----TGAGCTGAAGAGTGAGGATATGGGTAGCTCCAACCCAAACCTGGAGATGGGGGGAAACCTACAGAATACTAGCCAGAG---CTCCACCTTGTCTTGGTAGCCTACTAG--GGACCTGAGGAAGCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30133282 173 + 172585720 CATGT--------GAAGGGAAGGAAGAG-----GAAGAGTGT-GAAACATTGAAGAGAGAGCTGAG----TGAACTGAAGAGTGAGGATATGGGTAGCCCTAACCCAAACCTGGAGATGGGGAGAAACCTACAGAATACTAGCCAGAG---CTCCACCTTGTCTTGGCAGCCTACTAG--GGAACTGGGGAAGCAA
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29796739 173 - 170955103 CATGT--------GAAGGGAAGGAAGAG-----GAAGAGTGT-GAAACATTGAAGAGAGAGCTGAG----TGAACTGAAGAGTGAGGATATGGGTAGCCCTAACCCAAACCTGGAGATGGGGAGAAACCTACAGAATACTAGCCAGAG---CTCCACCTTGTCTTGGCAGCCTACTAG--GGAACTGGGGAAGCAA
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2842311 173 -   2996164 CATGT--------GAAGGGAAGGAAGAG-----GAAGAGTGT-GAAACATTGAAGAGAGAGCTGAG----TGAACTGAAGAGTGAGGATATGGGTAGCCCTAACCCAAACCTGGTGATGGGGAGAAACCTACAGAATACTAGCCAGAG---CTCCACCTTGTCTTGGCAGCCTACTAG--GGAACTGGGGAAGCAA
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012002711v1     590974 173 +    766320 CATGT--------GAAGGGAAGGAAGAG-----GAAGAGTGT-GAAACATTGAAGAGAGAGCTGAG----TGAACTGAAGAGTGAGGATATGGGTAGCCCCAACCCAAACCTGGAGATGGGGAGAAACCTACAGAATACTAGCCAGAG---CTCCACCTTGTCTTGGCAGCCTACTAG--GGAACTGGGGAAGCAA
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17            29048196 173 -  71996105 CATGT--------GAAGGGAAGGAAGAG-----GAAGAGTGT-GAAACATTGAAGAGAGAGCTGAG----TGAACTGAAGAGTGAGGATATGGGTAGCCCCAACCCAAACCTGGAGATGGGGAGAAACCTACAGAATACTAGCCAGAG---CTCCACCTTGTCTTGGCAGCCTACTAG--GGAACTGGGGAAGCAA
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012099233v1     245464 173 +    290775 CATGT--------GAAGGGAAGGAAGAG-----GAAGAGTGT-GAAACATTGAAGAGAGAGCTGAG----TGAACTGAAGAGTGAGGATATGGGTAGCCCCAACCCAAACCTGGAGATGGGGAGAAACCTACAGAATACTAGCCAGAG---CTCCACCTTGTCTTGGCAGCCTACCAG--GGAACTGGGGAAGCAA
i manLeu1.NW_012099233v1   C 0 I 7208
s colAng1.NW_012115566v1    2686155 173 -   3067355 CATGT--------GAAGGGAAGGAAGAG-----GAAGAGTGT-GAAACATTGAAGAGAGAGCTGAG----TGAGCTGAAGAGTGAGGATATGGGTAGCCCCACCCCAAACCTGGAGATGGTGAGAAACCTACAGAATACTAGCCGGAG---CTCCACCTTGTCTTGGTAGCCTACTAG--GGAACTGGGGAAGCAA
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chrUn_GL286223      63982 171 +    132061 CATGT--------GAAGGGAAGGAAGAG-----GAAGAGTTC-AGAACGTT--AAAGACAGCTGAG----TTGGCTGCAGAGTGAGGATATGGGTCGCCCCAACCCAAACCTGGAGATTGGGAGAAACCTACAGAATGATAGCCAGAG---GTCCACCTTGTTTTGGTAGTCTAGCAG--GGACTTGGGGAAGCAA
i calJac3.chrUn_GL286223   C 0 I 1
s saiBol1.JH378388            18233 168 -    110772 CATGT--------GAAGGGAAGGAAGAG-----GAAGAGATC-AGAACGTT--AAAGAGAGCTGAG----TGAGCTCCAGAGTGCGGACATGGGTAGCCCCAACCCAAACCTGGAGATTGGGAGAAACCTACAGA---ATAGCCAGAG---GTCTACCTTGTTTTGGTAGCCTACTAG--GGACTTGGGGAAGCAA
i saiBol1.JH378388         C 0 I 1
s cebCap1.NW_016107755v1     282988 170 -   1771730 CATGT--------GAAGGGAAGGAAGAG-----GAAGAGTTC-AGAACGTT--AAAGAGAGCTGAG----TGAGCTGCAGAATGAGGATATGGGCAGCCCCAACCCAGACCTGGAGATTGGGAGAAACCTACAGAATAATTGCCAGAG---ATCCACCTTCTCTTGGTAGCCTACTAG--GGACTTGGGGAA-CAA
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018509740v1     353755 171 -    457564 CACGT--------GAAGGGAAGGAAGAG-----GAAGAGTTC-AGAACGTT--AAAGAGAGCTGAG----TGAGCTGCAGAGTGAGGATATGGGTAGCCCCAACCCAAAGCTGGAGATTGGGAGAAACCTACAGAATAACAGCCAGAG---GTCCACCATGTCTTGGTAGCCTACCAG--GGACTTGGGGAAGCAA
i aotNan1.NW_018509740v1   C 0 I 1
s otoGar3.GL873550           163301 178 +  18854210 --TGTACAGGGTAGAAGGGAAGGAACAG-----GGTAAGTCC-AAAGTATCAAAGAGGGA-CTGAGTAATTAAGCTGCAGAGTGAGGCTCCTGGGAGCCCTAACCAAAAGCTGGAGAT---GAGAAACCCACAGAATACTGGCCAGAA---CTCCATTTTGTCTCTGCAGCCTACCAA--GGGTTTAGGG-AGCAA
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57976167 172 -  94987271 --TGG--------GGGGGGGGGGGTCAGGAACAGAAGAGCCC-ACAATATC--GGGGAAAGCTAAG----TGAGCC--AGGGTATGAATATGAGCA-CCTGAACCAAAACCTGGAGCT----AAAATTCAAAAGAATACCGACCAGAGAAATACCATCTTGCTTTGGCAGCCTGGTGGGAGGACCTTGAGAAGCAA
i mm10.chr17               C 0 I 1
s canFam3.chr35            26267077 114 +  26524999 --TGT--------G-AGGGCTGCAGGAG-----CAGGAATGG-GAAGCAC------GGGAGCTCAG----TGAGGATGGTGCTGGAGCACTGTGTGGCCCCG---------------TGGGGAGCATC----AGAACACAGGCCTGAC---CCCCA---TGTCCTG------------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               196363 449 + 123392446 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     657254 255 +    730504 I

a score=1245742.000000
s hg38.chr6_GL000254v2_alt   937179 129 +   4827813 AAACGAAAGCTGGGCAACATGCCTGCTTTAGAATGTTTTCCTTCTACTTACACATCTTCCACAGG--TCTCAGAATCTTTCCTTCCTCTCATCCTTTT-CTCCTATCTTCATATCTATCAGAGTATCCACTG
s panTro5.chr6             29899952 129 + 175400573 AAACGAAAGCTGGGCAACATGCCTGCTTTAGAATGTTTTCCTTCTACTTACACATCTTCCACAGG--TCTCAGAATCTTTCCTTCCTCTCATCCTTTT-CTCCTATCTTCATATCTATCAGAGTATCCACTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30133605 129 + 173848474 AAACGAAAGCTGGGCAACATGCCTGCTTTAGAATGTTTTCCTTCTACTTACACATCTTCCACAGG--TCTCAGAATCTTTCCTTCCTCTCATCCTTTT-CTCCTATCTTCATATCTATCAGAGTATCCACTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5933222 129 +   6154872 AAACGAAAGCTGGGCAACATGCCTGCTTTAGAATGTTTTCCTTCTACTTACACATCTTCCACAGG--TCTCAGAATCTTTCCTTCCTCTCATCCTTTT-CTCCTATCTTCATATCTATCAGAGTATCCACTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74650479 130 + 122973662 AAATGAAAGCTCGGCAACATGCCTGCTTTAGAATGTTTTCCTTCTACTTACACATCTTCCACAGG--TCTCAGAATCTTTCCTTCCTTTCATCCTTTTCCTCCTATCTTCATATCTATCAGAGTATCCACTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30133456 128 + 172585720 AAATGAAAGCTGGGCAACATGCCTGCTTTAGAATGTCTTCCTTCTACTTACACATCTTCCACAGG--TCTCAGAA--TTTCCTTCCTCTCATCCTTTTTCTCCTGTCTTCATATCTACCAGAGTATCCACTG
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29796913 128 - 170955103 AAATGAAAGCTGGGCAACATGCCTGCTTTAGAATGTCTTCCTTCTACTTACACATCTTCCACAGG--TCTCAGAA--TTTCCTTCCTCTCATCCTTTTTCTCCTGTCTTCATATCTACCAGAGTATCCACTG
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2842485 128 -   2996164 AAATGAAAGCTGGGCAACATGCCTGCTTTAGAATGTCTTCCTTCTACTTACACATCTTCCACAGG--TCTCAGAA--TTTCCTTCCTCTCATCCTTTTTCTCCTGTCTTCATATCTACCAGAGTATCCACTG
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1     591148 128 +    766320 AAATGAAAGCTGGACAACATGCCTGCTTTAGAATGTCTTCCTTCTACTTACATATCTTCCACAGG--TCTCAGAA--TTTCCTTCCTCTCATCCTTCTTCTCCTGTCTTCATATCTACCAGAGTATCCACTG
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17            29048370 128 -  71996105 AAATGAAAGCTGGGCAACATGCCTGCTTTAGAATGTCTTCCTTCTACTTACACATCTTCCACAGG--TCTCAGAA--TTTCCTTCCTCTCATCCTTTTTCTCCTGTCTTCATATCTACCAGAGTATCCACTG
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012099233v1     252845 128 +    290775 AAATGAAAGCTGGGCAACATGCCTGCTTTAGAATGTCTTCCTTCTACTTACACATCTTCCACAGG--TCTCAGAA--TTTCCTTCCTCTCATCCTTTTTCTCCTGTCTTCATATCTACCAGAGTATCCACTG
i manLeu1.NW_012099233v1   I 7208 C 0
s colAng1.NW_012115566v1    2686329 128 -   3067355 AAATGAAATCTGGGCAACATGCCTGCTTTAGAATGTCTTCCTTCTACTTACAAATCTTCCACAGG--TCTCAGAA--TTTCCTTCCTCTCATCCTTTTTCTCCTGTCTTCATATCTACCAGAGTATCCACTG
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chrUn_GL286223      64154 126 +    132061 AGGTGAAATCTAGGCAACATGCCTGCTTCAGAATGTTT------TACTTATATATCTTCCACAGGTCTCTCAGAATCTTCCCCTCCTCTCATCCTTTTTCTCCCATCTTCATACCTATCAGAGTATCCACTG
i calJac3.chrUn_GL286223   I 1 C 0
s saiBol1.JH378388            18402 125 -    110772 AGGTGAAATCTAGGCAACATGCCTGCTTTAGAATGTTT------TACTTATATATCTTCCACACGTCTCTCAGAATCTTCCCCGCC-CCCATTCCTTTTCTCCCATCTTCATACCTATCAGAGTATCCACTG
i saiBol1.JH378388         I 1 C 0
s cebCap1.NW_016107755v1     283159 126 -   1771730 ACGTGAAATCTAGGCAACATGCCTGCTTTAGAATGTTT------TACTTATACATCTTCCACAGGTCTCTCAGAATCTTCCCCTCCTCTTATCCTTTTTCTCCCATCTTCATACCTATCAGAGTATCCACTG
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018509740v1     353927 126 -    457564 AGGTGAAATCTAGGCAACATGCCTGCTTTAGAATGTTT------TACTTACACATCTTCCACAGGTCTCTCAGAATCTTCCCCTCCTCTCATCCTTTTTCTCCCATCTTCATACCTATCAGAGTATCCACTG
i aotNan1.NW_018509740v1   I 1 C 0
s otoGar3.GL873550           163480 107 +  18854210 AGATTAGAGCTGGG-----TACCTGTCTTAGATTGTCT-CCTCCCTTCTGCATAT-----ATGGGTCCCCCAGACTCTTTCTCTCCTCTCA--------------TCTTCACACCTATCAGAGTATCCACTA
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57976340  98 -  94987271 GGCTGAGAACTGGG-------TCTGCTCCCCTATGTTC------------CACACCTT---CGTGCCCTTCATAC----CCCTGCCTCTCA----TTTTCTCCTACCTT---ATTTCTCTGAG-AACCAATG
i mm10.chr17               I 1 I 8
s canFam3.chr35            26267191  74 +  26524999 ----CATAGCTGGG------------------------------------------TCCCCCAGG--CTCCA---------CCCCCTCTGGTCCTTGCTCGCCCATC-TCATACCTGTCCAAGCATCCACTG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               196363 449 + 123392446 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     657254 255 +    730504 I

a score=49552.000000
s hg38.chr6_GL000254v2_alt   937308 3 +   4827813 TTT
s panTro5.chr6             29900081 3 + 175400573 TTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30133734 3 + 173848474 TTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5933351 3 +   6154872 TTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74650609 3 + 122973662 TTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30133584 3 + 172585720 TTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29797041 3 - 170955103 TTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2842613 3 -   2996164 TTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     591276 3 +    766320 TTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29048498 3 -  71996105 TTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     252973 3 +    290775 TTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2686457 3 -   3067355 TTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      64280 3 +    132061 TTT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            18527 3 -    110772 TTT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     283285 3 -   1771730 TTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     354053 3 -    457564 TTT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     657509 3 +    730504 TTT
i proCoq1.NW_012152574v1   I 255 C 0
s otoGar3.GL873550           163587 3 +  18854210 TTT
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57976446 3 -  94987271 TTC
i mm10.chr17               I 8 C 0
s canFam3.chr35            26267265 3 +  26524999 TTT
i canFam3.chr35            C 0 I 1
e micMur3.chr6               196363 449 + 123392446 I
e dasNov3.JH582591            87028 3996 +    102524 M

a score=378653.000000
s hg38.chr6_GL000254v2_alt   937311 25 +   4827813 ATTCAACAACTACTACTTGATGG----TC
s panTro5.chr6             29900084 25 + 175400573 ATTCAACAACTACTACTTGATGG----TC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30133737 25 + 173848474 ATTCAACAACTACTACTTGATGG----TC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5933354 25 +   6154872 ATTCAACAACTACTACTTGATGG----TC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74650612 25 + 122973662 ATTCAACAACTACTACTTGATGG----TC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30133587 25 + 172585720 ATTCAACAACTACTACTTGATGG----TC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29797044 25 - 170955103 ATTCAACAACTACTACTTGATGG----TC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2842616 25 -   2996164 ATTCAACAACTACTACTTGATGG----TC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     591279 25 +    766320 ATTCAACAACTACTACTTGATGG----TC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29048501 25 -  71996105 ATTCAACAACTACTACTTGATGG----TC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     252976 25 +    290775 ATTCAACAACTACTACTTGATGG----TC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2686460 25 -   3067355 ATTCAACAACTACTACTTGATGG----TC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      64283 29 +    132061 ATCCAACAACTACTACTGGATGGTCTGTC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            18530 29 -    110772 ATTCGACAACTACTTCTGAATGGTCTATC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     283288 29 -   1771730 ATTCAACAACTACTACTGGATGGTCTATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     354056 29 -    457564 ATTCAACAGCTACTACTGGATGGTCTATC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               196812 25 + 123392446 ATTCAACAATTACCACTTGATGG----TC
i micMur3.chr6             I 449 I 4
s proCoq1.NW_012152574v1     657512 25 +    730504 ATTCAACAATTACCACTTGATGG----TC
i proCoq1.NW_012152574v1   C 0 I 4
s otoGar3.GL873550           163591 25 +  18854210 ATTCAACAATTACTACTTGATGG----TT
i otoGar3.GL873550         I 1 I 122
s mm10.chr17               57976449 25 -  94987271 CCCCAAAAATTACTACTTGGTGG----TC
i mm10.chr17               C 0 I 4
s canFam3.chr35            26267269 28 +  26524999 CTCCAGCGATTACTACTTGATGT-CTATC
i canFam3.chr35            I 1 C 0
e dasNov3.JH582591            87028 3996 +    102524 M

a score=456722.000000
s hg38.chr6_GL000254v2_alt   937336 32 +   4827813 AGACACAAACAAACAAGCTAGGTGCTAAT---TAA
s panTro5.chr6             29900109 32 + 175400573 AGACACAAACAAACAAGCTAGGTGCTAAT---TAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30133762 32 + 173848474 AGACACAAACAAACAAGCTAGGTGCTAAT---TAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5933379 32 +   6154872 AGACACAAACAAACAAGCTAGGTGCTAAT---TAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74650637 28 + 122973662 AGAC----ACAAACAAGCTAGGTGCTAAT---TAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30133612 32 + 172585720 AGATACAAACAAACAAGCTAGGTGCTAAT---TAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29797069 32 - 170955103 AGATACAAACAAACAAGCTAGGTGCTAAT---TAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2842641 32 -   2996164 AGATACAAACAAACAAGCTAGGTGCTAAT---TAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     591304 32 +    766320 AGATACAAACAAACAAGCTAGGTGCTAAT---TAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29048526 32 -  71996105 AGATACAAACAAACAAGCTAGGTGCTAAT---TAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     253001 32 +    290775 AGATACAAACAAACAAGCTAGGTGCTAAT---TAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2686485 32 -   3067355 AGATACAAACAAACAAGCTAGGTGCTAAT---TAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      64312 35 +    132061 AGACACAAACAAACAAGCTAGGTGCTAATTAATAA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            18559 32 -    110772 AGACACAAACAAATAAGCTAGGTGCTAAT---TAA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     283317 35 -   1771730 AGACAAAAGCAAATAAGCTAGGTGCTAATTAATAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     354085 32 -    457564 AGACACAAACAAACAAGCTAGGTGCTAAT---TAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               196841 32 + 123392446 AGACACAAAGAAACAAGCTAGGTGCTAAC---TAA
i micMur3.chr6             I 4 I 47
s proCoq1.NW_012152574v1     657541 32 +    730504 AGACACAAAGAAACAAGCTAGGTGCTAAT---TAA
i proCoq1.NW_012152574v1   I 4 I 48
s mm10.chr17               57976478 28 -  94987271 AGAC----ACAAACAAGCTAGGTGCTAAT---TAA
i mm10.chr17               I 4 C 0
s canFam3.chr35            26267297 29 +  26524999 --AGGCAAAGAAACAAGTCAGGTGATAAT---TA-
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            87028 3996 +    102524 M
e otoGar3.GL873550           163616 122 +  18854210 I

a score=144244.000000
s hg38.chr6_GL000254v2_alt   937368 15 +   4827813 TAAAGATACGAGTTT
s panTro5.chr6             29900141 15 + 175400573 TAACGATACGAGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30133794 15 + 173848474 TAACGATACGAGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5933411 15 +   6154872 TAACGATACGAGTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74650665 15 + 122973662 TAACGATACGAGTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30133644 15 + 172585720 TAATGATAAGAGTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29797101 15 - 170955103 TAATGATAAGAGTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2842673 15 -   2996164 TAATGATAAGAGTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     591336 15 +    766320 TAATGATATGAGTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29048558 15 -  71996105 TAATGATATGAGTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     253033 15 +    290775 TAATGATACGAGTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2686517 15 -   3067355 TAATGATATGAGTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      64347 15 +    132061 TAATAATACAAGTTT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            18591 15 -    110772 TAATAATACCAGTTT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     283352 15 -   1771730 TAATAATACAAGTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     354117 15 -    457564 TAATAATACAAGTTT
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57976506 12 -  94987271 ---TAATACAAGTTT
i mm10.chr17               C 0 I 306
e micMur3.chr6               196873 47 + 123392446 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     657573 48 +    730504 I
e canFam3.chr35            26267326  0 +  26524999 C
e otoGar3.GL873550           163616 122 +  18854210 I

a score=1702766.000000
s hg38.chr6_GL000254v2_alt   937383 180 +   4827813 Tggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcgaatcacgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaacaattaactgagcatagtggtgggcacctataataccagctactccggag
s panTro5.chr6             29900156 180 + 175400573 Tggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcgaatcacgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaacaattaactgggcatagtggtgggcacctataataccagctactccggag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30133809 180 + 173848474 Tggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcgaatcacgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaacaattaactgggcatagtggtgggcagctataataccagctactccggag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5933426 179 +   6154872 Tggccgggtgcggtggctcatgcctgtaatcccagcactttggga-gccgaggcgggcgaatcacaaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaacaattaactgggcatagtggtgggcacctataataccagctactcgggag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74650680 180 + 122973662 Tggccgggcgcggtggctcacgcctgtaatctcagcactttgagaggccgaggtgggcggatcacgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaacaattagctgggcatagtggtgggcgcctataatcccagctactcgggag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30133659 180 + 172585720 Tggttgagcacggtggctcacacctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcaggagttcgagaccagtctggccaacatggtgaaaccccgtctttactaaaaatataaacaattagctgggcatagtggtgggtgcctgtaatcccagctactcaggag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29797116 180 - 170955103 Tggttgagcacggtggctcacacctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcaggagttcgagaccagtctggccaacatggtgaaaccccgtctttactaaaaatataaacaattagctgggcatagtggtgggtgcctgtaatcccagctactcaggag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2842688 180 -   2996164 Tggttgagcacggtggctcacatctgtaatcccagcactttgggagtctgaggcaggtggatcacgaggtcaggagttcgagaccagtctggccaacatggtgaaaccccgtctttactaaaaatataaacaattagctgggcatagtggtgggtgcctgtaatcccagctactcaggag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     591351 180 +    766320 Tggttgagcacggtggctcacacctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctttattaaaaatacaaacaattagctgggcatagtggtgggcgcctgtaatcccagctactcaggag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29048573 180 -  71996105 Tggttgagcacggtggctcacacctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctttactaaaaatataaacaattagctgggcatagtggtgggcgcctgtaatcccagctactcaggag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     253048 180 +    290775 Tggttgagcacggtggctcacacctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctttattaaaaatacaaacaattagctgggcatagtggtgggcgcctgtaatcccagctactcaggag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2686532 180 -   3067355 Tggttgagcacggtggctcacacctgtaatctcagcactttgggaagctgaggcgggtggatcatgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctttactaaaaatacaaacaattagctgggcatagtggtgggcgcctgtaatcccagctactcaggag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      64362 178 +    132061 Tggccagg--cagtggctcaggtctgtaatcttagcactttggaaggccaaggtggacaaatcacgacaccaggaatttgaggccatcctggccaacatagtgaaacctcatctctactaaaaatacaaaaaattagctgagtgtaatggcaggcgcctataatcccagctactcggggg
i calJac3.chrUn_GL286223   C 0 I 2
s saiBol1.JH378388            18606 180 -    110772 TggccaggcacagtggctcacgcctgtaatcccagcactttggaaggccaaggtggacacatcacaacgtcaggagtttgagaccatcctggccaacatagtgaaacctcatctctactaaaaatacaaaaaattagctgagtgtagtggcaggtgcctataatcccagctactcgggGG
i saiBol1.JH378388         C 0 I 413
s cebCap1.NW_016107755v1     283367 180 -   1771730 Tggccaggcacagtggctcatgcctgtaatctcagcactttggaaggccaaggtggacaaatcacgacatcaggagtttgagaccatcctggccaacatagtgaaacctcatctctactaaaaatacaaaaaattagctgagtgtagtggcaggtgcctataatcccagctacttggggg
i cebCap1.NW_016107755v1   C 0 I 2
s aotNan1.NW_018509740v1     354132 180 -    457564 Tggccaggcacagtggctcacgcctgtaatcccagcactttggaaggccaaggtggacaaatcacgacgtcaggaatttgagaccatcctggccaacatagtgaaacctcatctctactaaaaacacaaaaaattagctgagtgtagtggcaggcgcctataatcccagctacttgggaa
i aotNan1.NW_018509740v1   C 0 I 2
e micMur3.chr6               196873  47 + 123392446 I
e mm10.chr17               57976518 306 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     657573  48 +    730504 I
e canFam3.chr35            26267326   0 +  26524999 C
e otoGar3.GL873550           163616 122 +  18854210 I

a score=930204.000000
s hg38.chr6_GL000254v2_alt   937563 125 +   4827813 gctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagctgagatcgcgccactgcactctagccggagtgacagagtaagactctgtctcaa--aa---------------ataaa-----taaataaataaata
s panTro5.chr6             29900336 125 + 175400573 gctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagctgagatcacgccactgcactctagctggagtgacagagtaagactctgtctcaa--aa---------------ataaa-----taaataaataaata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30133989 125 + 173848474 gctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagctgagatcacgccactgcactctagctggagtgacagagaaagactctgtctcaa--aa---------------ataaa-----taaataaataaata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5933605 130 +   6154872 gctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagctgagatcgcgccactgcactctagctgtagtgacagagtaagactctgtctcaa--aa---------------ataaatacattaaataaataaata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74650860 127 + 122973662 gctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagctgagatcgtaccactgcactccagccagagtgacagagtaagactctgtcttaaataa---------------ataaa-----taaataaataaata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30133839 127 + 172585720 gctgaggcaggagaatcgcttgaacccaggaggcggaggttacagtgagctgagatcacgtcactgcattctagctggggtgacagagtaagactctgtctcga--aa-------------aaataaa-----taaataaataaata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29797296 127 - 170955103 gctgaggcaggagaatcgcttgaacccaggaggcggaggttacagtgagctgagatcacgtcactgcattctagctggggtgacagagtaagactctgtctcga--aa-------------aaataaa-----taaataaataaata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2842868 127 -   2996164 gctgaggcaggagaatcgcttgaacccaggaggcggaggttacagtgagctgagatcatgtcactgcattctagctggggtgacagagtaagactctgtctcGa--at-------------aaataaa-----taaataaataaata
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     591531 111 +    766320 gctgagacaggagaatagcttgaacccaggaggcggaggttacagtgagctgagatcacatcactgcattctagctggggtgacagagtaagactctgtctcga--aa----------------------------------aaata
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29048753 135 -  71996105 gctgaggcaggagaatcgcttgaacccaggaggcggaggttacagtgagctgagatcatgtcactgcattctagctggggtgacagagtaagactctgtctcga--aa-----aaataaataaataaa-----taaataaataaata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     253228 119 +    290775 gctgagacaggagaatagcttgaacccaggaggcggaggttacagtgagctgagatcacatcactgcattctagctggggtgacagagtaagactctgtctcga--aa--------------------------aaaCaaataaata
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2686712 140 -   3067355 gctgaggcaggggaatcgcttgaacccaggaggtggaggttacagtgagctgagatcacgtcagtgcattctagctggggtgacagagtaagactctatctcga--aaaaataaaataaataaataaa-----taaataaataaata
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      64542 120 +    132061 gctgaggcaggagaatcacttgaacctgggaggcggaagttgcagtgagcgaagatcacaccactgcactctagcccgagc--cagagtgagactctgtctcaa--aa-----------------aaa-----taaa-aataaaata
i calJac3.chrUn_GL286223   I 2 C 0
s cebCap1.NW_016107755v1     283549 116 -   1771730 gctgaggcaggag-atcacttgaacctgggaggcgggagttgcagtgagcgaagatcacaccactgtactccagcccgagcaacagagtgagactctgtctcaa--aa-----------------aaa-----ta------aaaata
i cebCap1.NW_016107755v1   I 2 C 0
s aotNan1.NW_018509740v1     354314 122 -    457564 gctgaggcaggagaattgcttgaacctgggaggcagaagttgcagtgagcgaagatcacaccactgcactccagccagagcaacagagtgagactctgtctcaa--aa-----------------aaa-----taaa-aataaaata
i aotNan1.NW_018509740v1   I 2 C 0
e micMur3.chr6               196873  47 + 123392446 I
e mm10.chr17               57976518 306 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     657573  48 +    730504 I
e canFam3.chr35            26267326   0 +  26524999 C
e saiBol1.JH378388            18786 413 -    110772 I
e otoGar3.GL873550           163616 122 +  18854210 I

a score=23638.000000
s hg38.chr6_GL000254v2_alt   937688 25 +   4827813 aataa---------------ataaataaataaataaaaaa
s panTro5.chr6             29900461  9 + 175400573 aataa---------------a----------------aaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30134114  5 + 173848474 aa-----------------------------------aaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5933735 10 +   6154872 aataa---------------at---------------aaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74650987 10 + 122973662 aataa---------------at---------------aaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30133966 10 + 172585720 aataa---------------at---------------aaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29797423 10 - 170955103 aataa---------------at---------------aaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2842995 10 -   2996164 aataa---------------at---------------aaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     591642 10 +    766320 aataa---------------at---------------aaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29048888 10 -  71996105 aataa---------------at---------------aaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     253347 10 +    290775 aataa---------------at---------------aaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2686852 10 -   3067355 aataa---------------at---------------aaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      64662  8 +    132061 aaTAA--------------------------------TAA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     283665  8 -   1771730 aaTAA--------------------------------TAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     354436  8 -    457564 aaTAA--------------------------------TAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           163738 25 +  18854210 AAAAACCAAGCTAGGTGCTAAT---------------TAA
i otoGar3.GL873550         I 122 C 0
e micMur3.chr6               196873 47 + 123392446 I
e mm10.chr17               57976518 306 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     657573 48 +    730504 I
e canFam3.chr35            26267326  0 +  26524999 C
e saiBol1.JH378388            18786 413 -    110772 I

a score=124751.000000
s hg38.chr6_GL000254v2_alt   937713 16 +   4827813 ta------aTAATACAAGTTTT
s panTro5.chr6             29900470 16 + 175400573 ta------aTAATACAAGTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30134119 16 + 173848474 ta------aTAATACAAGTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5933745 16 +   6154872 ta------aTAATACAAGTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74650997 19 + 122973662 ta---aatataataCAAGTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30133976 17 + 172585720 ta---a--ataaTACGAGTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29797433 17 - 170955103 ta---a--ataaTACGAGTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2843005 17 -   2996164 ta---a--ataaTACGAGTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     591652 17 +    766320 ta---a--aTAATACGAGTTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29048898 17 -  71996105 ta---a--ataaTACGAGTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     253357 17 +    290775 ta---a--ataaTACGAGTTTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2686862 20 -   3067355 taaata--aTAATACGAGCTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      64670 16 +    132061 TA------CTAACACAAATTTC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     283673 16 -   1771730 TA------CTAACACGAGTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     354444 16 -    457564 TA------CTAACACAAATTTC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           163763 16 +  18854210 TA------ATAATATGAGTTTC
i otoGar3.GL873550         C 0 I 4
s canFam3.chr35            26267326 16 +  26524999 TA------GTAATACGAATTTC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               196873 47 + 123392446 I
e mm10.chr17               57976518 306 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     657573 48 +    730504 I
e saiBol1.JH378388            18786 413 -    110772 I

a score=306388.000000
s hg38.chr6_GL000254v2_alt   937729 31 +   4827813 CATAAGCACACTTCTAACCCCTTGTCT---TTTA
s panTro5.chr6             29900486 31 + 175400573 CATAAGCACACTTCTAACCCCTTGTCT---TTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30134135 31 + 173848474 CATAAGCACACTTCTAACCCCTTGTCT---TTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5933761 31 +   6154872 CATAAGCACACTTCTAACCCCTTGTCT---TTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74651016 31 + 122973662 CGTATGCACACTTCTAACCCCTTTTCT---TTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30133993 31 + 172585720 CATATGCACACTTCTAACCCCTTTTCT---TTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29797450 31 - 170955103 CATATGCACACTTCTAACCCCTTTTCT---TTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2843022 31 -   2996164 CATATGCACACTTCTAACCCCTTTTCT---TTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     591669 31 +    766320 CATATGCACACTTCTAACCCCTTTTCT---TTTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29048915 31 -  71996105 CATATGCACACTTCTAACCCCTTTTCT---TTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     253374 31 +    290775 CATATGCACACTTCTAACCCCTTTTCT---TTTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2686882 31 -   3067355 CATACGCACACTTCTAACCCCTTTTCT---TTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      64686 34 +    132061 CATATGCACACTTCTAACCCCTTTTTTAAATATA
i calJac3.chrUn_GL286223   C 0 I 318
s saiBol1.JH378388            19199 31 -    110772 CATATGCACACTTCTAACCCTTTTTCT---TTTA
i saiBol1.JH378388         I 413 C 0
s cebCap1.NW_016107755v1     283689 30 -   1771730 CATATGCACAC-TCTAACTCTTTTTCT---TTTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     354460 31 -    457564 CATGTGCACACTTCTAACCCTTTTTCT---TTCA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           163783 30 +  18854210 TATGTACATTCTTCTTTTCCTTCTTGT---TTT-
i otoGar3.GL873550         I 4 C 0
s canFam3.chr35            26267342 29 +  26524999 TGTGTGCACGTCTC-ATCCCCTTGTGT---TCC-
i canFam3.chr35            C 0 C 0
e micMur3.chr6               196873 47 + 123392446 I
e mm10.chr17               57976518 306 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     657573 48 +    730504 I

a score=19197.000000
s hg38.chr6_GL000254v2_alt   937760 2 +   4827813 TG
s panTro5.chr6             29900517 2 + 175400573 TG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30134166 2 + 173848474 TG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5933792 2 +   6154872 TG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74651047 2 + 122973662 TG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30134024 2 + 172585720 TA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29797481 2 - 170955103 TA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2843053 2 -   2996164 TA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     591700 2 +    766320 TA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29048946 2 -  71996105 TA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     253405 2 +    290775 TA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2686913 2 -   3067355 TA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      65038 2 +    132061 TA
i calJac3.chrUn_GL286223   I 318 C 0
s saiBol1.JH378388            19230 2 -    110772 TA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     283719 2 -   1771730 TA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     354491 2 -    457564 TA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           163813 2 +  18854210 TA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26267371 2 +  26524999 TG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               196873 47 + 123392446 I
e mm10.chr17               57976518 306 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     657573 48 +    730504 I

a score=1252184.000000
s hg38.chr6_GL000254v2_alt   937762 93 +   4827813 TATTTCCTTCCTTATCCACGCACCTGTCTCCCTCTACTCCAGCCTCATTACCCCAGAGGTCAGTCCTCAGGAAAACTAAACACAAAGAAAGAG
s panTro5.chr6             29900519 93 + 175400573 TATTTCCTTCCTTATCCACGCACCTGTCTCCCTCTACTCCAGCCTCATTACCCCAGAGGTCAGTCCTCAGGAAAACCAAACACAAAGAAAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30134168 93 + 173848474 TATTTCCTTCCTTATCCACGCACCTGTCTCCCTCTACTCCAGCCTCATTACCCCAGAGGTCAGTCCTCAGGAAAACCAAACACAAAGAAAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5933794 93 +   6154872 TATTTCCTTCCTTATCCACGCACCTGTCTCCGTCTACTCCAGCCTCATTACCCCAGAGGTCAGTCCTCAGGAAAACCAAACACAAAGAAAGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74651049 93 + 122973662 TATTTCCTTCCTTATCCACGCACCTGTCTCCCTCTACTCCAGCCTCATTACCCCAGAGGTCAGTGCTCAGGAAAACCAAACACAAAGAAAGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30134026 92 + 172585720 TATTTCCTTCCTTATCCACTCACCTGTCTCCCTCTACTCCAGCCTCCTTACCCCAGAGGTCAGTCCTCAGG-AAACCAAACACAAAGAAAGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29797483 92 - 170955103 TATTTCCTTCCTTATCCACTCACCTGTCTCCCTCTACTCCAGCCTCCTTACCCCAGAGGTCAGTCCTCAGG-AAACCAAACACAAAGAAAGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2843055 92 -   2996164 TATTTCCTTCCTTATCCACTCACCTGTCTCCCTCTACTCCAGCCTCCTTACCCCAGAGGTCAGTCCTCAGG-AAACCAAACACAAAGAAAGAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     591702 92 +    766320 TATTTCCTTCCTTATCCACTCACCTGTCTCCCTCTACTCCAGCCTCCTTACCCCAGAGGTCAGTCCTCAGG-AAACCAAACACAAAGAAAGAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29048948 92 -  71996105 TATTTCCTTCCTTATCCACTCACCTGTCTCCCTCTACTCCAGCCTCCTTACCCCAGAGGTCAGTCCTCAGG-AAACCAAACACAAAGAAAGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     253407 92 +    290775 TATTTCCTTCCTTATCCACTCACCTGTCTCCCTCTACTCCAGCCTCCTTACCCCAGAGGCCAGTCCTCAGG-AAACCAAACACAAAGAAAGAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2686915 92 -   3067355 TATTTCCTTCGTTTTCCACTCACCTGTCTCCCTCTACTCCAGCCTCCTTACCCCAGAGGTCAGTCCTCAGG-AAACCAAACACAAAGAAAGAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      65040 89 +    132061 TATTTCCTTCCTTATGCGCTCACCTCTCTCCCTCTACTCCAGCCTCCTTACCCCGGAGATCAGTCCTCAGAAAAACCAAATAC----AAAGAT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            19232 93 -    110772 TATTTCCTTCCTTATGCACTCACCTCTCTCCCTCTACTCCAGCCACCTTACCCCAGAGGTCAGTCCTCAGAAAAACCAAATACAAAGAAAGAT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     283721 89 -   1771730 TATTTCCTTCCTTATGCACTCACCTGTCTCTTTCTACTCCAGCCATCTTACCCTGGAGGTCAGTCCTCAGAAAAACCAAATAC----AAAGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     354493 93 -    457564 TATTTCCTTCCTTATGCACTCACCTGTCTCCCTCTACTCCAGCCACCTTACCCCAGAGGTCAGTCCTCAGAAAAACCAAATACAAAGAAAGAT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               196920 93 + 123392446 TATTTCCTTCATTATCCACTCACCTCTCTCCCTCTAACCCAGCCTCCTTGCCCCGGAGGTCAGTCCTCAGGAAAACCAAACTCGAAGAAAGAT
i micMur3.chr6             I 47 C 0
s proCoq1.NW_012152574v1     657621 93 +    730504 TATTTCCTTCATTATCCACTCGCCTCTCTCCCTCTAACCCAGCCTCCTAGCCCCAGAGGTCAGTCCTCAGGAAAAGCAAACATGAAGGAAGAC
i proCoq1.NW_012152574v1   I 48 C 0
s otoGar3.GL873550           163815 93 +  18854210 GATTTCCTTCATTATCCACTCACCTCTCTCCCTCTACCCCAGCCTCCTTACCCCGGAGGTAAGTCCTCAGGAAAACCAAACACGAAGAAAGAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26267373 84 +  26524999 TGTCTCCCTGGTGACC--CCTACCTCTCTGCCC---ACCCCGTCTCCTGAGCCTGGAGGCCAGTGCGTTGGAGAAGCAAACATGAACAC----
i canFam3.chr35            C 0 C 0
e mm10.chr17               57976518 306 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M

a score=18447521.000000
s hg38.chr6_GL000254v2_alt   937855 1233 +   4827813 CTCAGTCAGAAAGGCCATTTATTTATGTTTCAAGATGCTCACTGCCTCCTTTGTTTTGTCTCCTTTGCAGGCCTTCTCT----CTTAGGCCTCTTCTCCTGGGGGTATGGATCCTGGGGGGAGATTGATCACCTCCATGCTTCCATTCCTCCCCAGCCATAGTGGGGACATCATGAGAGAAGCCAAGCCACTGGCCCAGGATCACCCGGCATTTATGGTGGCTGCTCTGGCACAGGTCCTTGCCTTTATAGCCCCTCCAGTGATCCATAAGGCCCTCTTTCTCCCCAAAGGAGAGGTCACAGATAGGGCAAAGGTAGCTCTTCTGCTTCCAGTGGGT---CTGCTGGTGTCTGACCAGCCTGGAAAATGAGCTGAAAGACTTGCTGCAATGGAAGCAGTAGTTGGGCGGCTCTGTGAGGTGGGCCTTCTGGTGTCTGGAGAGATAGGATTTCTTGCTAAAAGTCAAAGAACAATGGGGGCAACAGAAGACATTGAGTCTTGAGGGCTTCACTGGATGAGAGTTGGATCTGGCATCCTGACAGAGGGTTCCAGTGATGGGTGCCTGGGTCCTGGT---------------------------------------CACAGG---TGCTTGGTTCTTAAGTACAGATGCCTGGTTCTGGGCCATAGGACCCTCAGTT--CTAAATATGGGTTCCTGGGACCTGGCCACTGGT------------------GCATGGTTCACATCCAAAAGCCCCTGGATGGACCTCTGGCTTCTGGCGATGGGTGTCTGGAATTCAGCCTGGGTGCCTGGAATCCTCAAAGTACACTCCTGGTTTCCATCCACTGGCTCCTGGTTTTGGTGTATCTTCTGGTGGCGTTTGAGCTCAGACTGGTCCCGGAAGCTCTTCCCACACACAGAGCATGAATGGGGCCGGTAACCCAGATGGACGCGGCGGTGACGACTTAGTCCAGAAGCATCACAGTAGGTCTTGTCACAGAGCGTGCAACAGAAGGGCCTCTCCCCAAGATGCATGCGTCTGTGATAGCTGAGGGACTTGGGGCTCCGAAACAACTTCCCACACTGA--CTGCAGCTGTTAGTCAGCTTGGGATTGTGAACAAACTGGTGGCTATAGAGGTAGGAGCGCCTGCTGAAACATTTGCCACAGGTGTAGCAAAAAAAGGGTGGCCCAGCCTGGGATGCTTGAAGCACCCGGGTCCTGTCCATAGTCCCAGCTGGGGCAGATAGGGGGCACTG-GCCGGCCCCTCTGCATGCAAGGAAGAC---CTTGTCATCACTAGTCCCCTCATC
s panTro5.chr6             29900612 1233 + 175400573 CTCAGTCAGAAAGGCCATTTATTTATGTTTCAAGATGCTCACTGCCTCCTTTGTTTTGTCTCCTTTGCAGGCCTTCTCT----CTTAGGCCTCTTCTCCTGGGAGTATGGATCCTGGGGGGAGATTGATCACCTCCATGCTTCCATTCCTCCCCAGCCATAGTGGGGACATCATGAGAGAAGCCAAGCCACTGGCCCAGGATCACCCGGCATTTATGGTGGCTGCTCTGGCACAGTTCCTTGCCTTTATAGCCCCTCCAGTGATCCATAAGGCCCTCTTTCTCCCCAAAGGAGAGGTCACAGATAGGGCAAAGGTAGCTCTTCTGCTTCCAGTGGGT---CTGCTGGTGTCTGACCAGCCTGGAAAATGAGCTGAAAGACTTGCTGCAATGGAAGCAGTAGTTGGGCGGCTCTGTGAGGTGGGCCTTCTGGTGTCTGGAGAGATAGGATTTCTTGCTAAAAGTCAAAGGACAATGGGGGCAACAGAAGACATTGAGTCTTGAGGGCTTCACTGGATGAGAGTTGGATCTGGCATCCTGACAGAGGGTTCCAGTGATGGGTGCCTGGGTCCTGGT---------------------------------------CACAGG---TGCTTGGTTCTTAAGTACAGATGGCTGGTTCTGGGCCATAGGACCCTCAGTT--CTAAATATGGGTTCCTGGGACCTGGCCACTGGT------------------GCATGGTTCACATCCAAAAGCCCCTGGATGGACCTCTGGCTTCTGGCGATGGGTGTCTGGAATTCAGCCCGGGTGCCTGGAATCCTCAAAGTACACTCCTGGTTTCCATCCACTGGCTCCTGGTTTTGGTGTATCTTCTGGTGGCGTTTGAGCTCAGACTGGTCCCGGAAGCTCTTCCCACACACAGAGCATGAATGGGGCCGGTAACCCAGATGGACGCGGCGGTGACGACTTAGTCCAGAAGCATCACAGTAGGTCTTGTCACAGAGCGTGCAACAGAAGGGCCTCTCCCCAAGATGCATGCGTCTGTGATAGCTGAGGGACTTGGGGCTCCGAAACAACTTCCCACACTGA--CTGCAGCTGTTAGTCAGCTTGGGATTGTGAACAAACTGGTGGCTATAGAGGTAGGAGCGCCTGCTGAAACATTTGCCACAGGTGTGGCAAAAAAAGGGTGGCCCAGCCTGGGATGCTTGAAGCACCCGGGTCCTGTCCATAGACCCAGCTGGGGCAGATAGGGGGCACTG-GCCGGCCCCTCTGCGTGCAAGGAAGAC---CTTGTCATCACTAGTCCCCTCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30134261 1233 + 173848474 CTCAGTCAGAAAGGCCATTTATTTATGTTTCAAGATGCTCACTGCCTCCTTTGTTTTGTCTCCTTTGCAGGCCTTCTCT----CTTAGGCCTCTTCTCCTGGGGGTATGGATCCTGGGGGGAGATTGATCACCTCCATGCTTCCATTCCTCCCCAGCCATAGTGGGGACATCATGAGAGAAGCCAAGCCACTGGCCCAGGATCACCCGGCATTTATGGTGGCTGCTCTGGCACAGTTCCTTGCCTTTATAGCCCCTCCAGTGATCCATAAGGCCCTCTTTCTCCCCAAAGGAGAGGTCACAGATAGGGCAAAGGTAGCTCTTCTGCTTCCAGTGGGT---CTGCTGGTGTCTGACCAGCCTGGAAAATGAGCTGAAAGACTTGCTGCAATGGAAGCAGTAGTTGGGCGGCTCTGTGAGGTGGGCCTTCTGGTGTCTGGAGAGATAGGATTTCTTGCTAAAAGTCAAAGGACAATGGGGGCAACAGAAGACATTGAGTCTTGAGGGCTTCACTGGATGAGAGTTGGATCTGGCGTCCTGACAGAGGGTTCCAGTGATGGGTGCCTGGGTCCTGGT---------------------------------------CACAGG---TGCTTGGTTCTTAAGTACAGATGGCTGGTTCTGGGCCATAGGACCCTCAGTT--CTAAATATGGGTTCCTGGGACCTGGCCACTGGT------------------GCATGGTTCACATCCAAAAGCCCCTGGATGGACCTCTGGCTTCTGGCGATGGGTGTCTGGAATTCAGCCTGGGTGCCTGGAATCCTCAAAGTACACTCCTGGTTTCCATCCACTGGCTCCTGGTTTTGGTGTATCTTCTGGTGGCGTTTGAGCTCAGACTGGTCCCGGAAGCTCTTCCCACACACAGAGCATGAATGGGGCCGGTAACCCAGATGGACGCGGCGGTGACGACTTAGTCCAGAAGCATCACAGTAGGTCTTGTCACAGAGCGTGCAACAGAAGGGCCTCTCCCCAAGATGCATGCGTCTGTGATAGCTGAGGGACTTGGGGCTCCGAAACAACTTCCCACACTGA--CTGCAGCTGTTAGTCAGCTTGGGATTGTGAACAAACTGGTGGCTATAGAGGTAGGAGCGCCTGCTGAAACATTTGCCACAGGTGTGGCAAAAAAAGGGTGGCCCAGCCTGGGATGCTTGAAGCACCCGGGTCCTGTCCATAGACCCAGCTGGGGCAGATAGGGGGCACTG-GCCGGCCCCTCTGCATGCGAGGAAGAC---CTTGTCATCACTAGTCCCCTCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5933887 1233 +   6154872 CTCAGACAGAAAGGCCATTTATTTATGTTTCAAGATGCTCACTGCCTCCTTTGTTTTGTCTCCTTTGCAGGCCTTCTCT----CTTAGGCCTCTTCTCCTGGGGGTGTGGATCCTGGGGGGAGATTGATCACCTCCATGCTTCCATTCCTCCCCAGCCATAGTGGGGGCATCATGAGAGAAGCCAAGCCACTGGCCCAGGATCACCCGGCATTTATGGTGGCTGCTCTGGCACAGTTCCTTGCCTTTATAGCCCTTCCAGTGATCCATAAGGCCCTCTTTCTCCCCAAAGGAGAGGTCACAGATAGGGCAAAGGTAGCTCTTCTGCTTCCAGTGGGT---CTGCTGGTGTCTGACCAGCCTGGAAAATGAGCTGAAAGACTTGCTGCAATGGAAGCAGTAGTTGGGCGGCTCTGTGAGGTGGGCTTTCTGATGTCTGGAGAGATAGGATTTCTTGCTAAAAGTCAAAGGACAGTGGGGGCAACAGAAGACATTGAGTCTTGAGGGCTTCACTGGATGAGAGTTGGATCTGGCATCCTGACAGAAGGTTCCAGTGATGGGTGCCTGGGTCCTGGT---------------------------------------CACAGG---TGCTTGGTTCTTAAGTACAGATGGCTGGTTCTGGGCCATAGGACCCTCAGTT--CTAAATATGGGTTCCTGGGACCTGGCCACTGGT------------------GCATGGTTCACATCCAAAAGCCCCTGGATGGACCTCTGGCTTCTGGCGATGGGTGTCTGGAATTCAGCATGGGTGCCTGGAATCCTCAAAGTACACTCCTGGTTTCCATCCACTGGCTCCTGGTTTTGGTGTATCTTCTGGTGGCGTTTGAGCTCAGACTGGTCCCGGAAGCTCTTCCCACACACAGAGCATGAATGGGGCCGGTAACCCAGATGGACGCGGCGGTGACGACTTAGTCCAGAAGCATCACAGTAGGTCTTGTCACAGAGCGTGCAACAGAAGGGCCTCTCCCCAAGATGCATGCGTCTGTGATAGCTGAGGGACTTGGGGCTCCGAAACAACTTCCCACACTGA--CTGCAGCTGTTAGTCAGCTTGGGATTGTGAACAAACTGGTGGCTATAGAGGTAGGAGCGCCTGCTGAAACATTTGCCACAGGTGTGGCAAAAAAAGGGTGGCCCAGCCTGGGATGCTTGAAGCACCCGGGTCCTGTCCATAGACCCAGCTGGGGCAGATAGGGGGCACTG-GCCAGCCCCTCTGCATGCAAGGAAGAC---CTTGTCATCACTAGTCCCCTCATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74651142 1233 + 122973662 CTCAGTCAGAAAGGCCATTTATTTATGTTTCAAGATGCTCACTGCTTCCTTTGTTTTGTCTCCTTTGCAGGCCTTCTCT----CTTAGGCCTCTTCTCCTGGGGGTATGGATCCTGGGGGGAGATTGATCACCTCCATGCTTCCATTCCTCCCCAGCCATAGTGGGGGCATCATGAGAGAAGCCAAGCCACTGGCCCAGGATCACCCGGCATTTATGGTGGCTGCTCTGGCACAGTTCCTTGCCTTTATAGCCCCTCCAGTGATCCATAAGGCCCTCTTTCTCCCCAAAGGAGAGGTCACAGATAGGGCAACGGTAGCTCTTCTGCTTCCAGTGGGT---CTGCTGGTGTCTGACCAGCCTGGAAAATGAGCTGAAAGACTTGCTACAATGGAAGCAGTAGTTGGGCGGCTCTGTGAGGTGGGCCTTCTGGTGTCTGGAGAGATAGGATTTCTTGCTAAAAGTCAAAGGACAATGGGGGCAACAGAAGACATTGAGTCTTGAGGGCTTCACTGGATGAGAGTTGGATCTGACATCCTGACAGGGGGTTCCAGTGATGGCTGCCTGGGTCCTGGT---------------------------------------CACAGG---TGCTTTGTTCTTAAGGACAGATGGCTGGTTCTGGGCCATAGGACCCTCAGTT--CTAAATATGGGTTCCTGGGACCTGGCCACTGGT------------------GCATGGTTCACATCCAAAAGCCCCTGGATGGACCTCTGGCTTCTGGCGATGGGTGTCTGGAATTCAGCAGGGGTGCCTGGAATCCTCAAAGTACACTCCTGGTTTCCATCCACTGGCTCCTGGTTTTGGTGTATCTTCTGGTGGCGTTTGAGCTCAGACTGGTCCCGGAAGCTCTTCCCACACACAGAGCATGAATGGGGCCGGTAACCCAGATGGACGCGGCGGTGACGACTTAGTCCAGAAGCATCACAGTAGGTCTTGTCACAGAGCGTGCAACAGAAGGGCCTCTCCCCAAGATGCATGCGTCTGTGATAGCTGAGGGACTTGGGGCTCCGAAACAACTTCCCACACTGA--CTGCAGCTATTAGTCAGTTTGGGATTGTGAACAAACTGGTGGCTATAGAGGTAGGAGCGCCTGCTGAAACATTTACCACAGGTGTGGCAAAAAAAGGGTGGCCCAGCCTGGGATGCTTGAAGCACCCGGGTCCTGTCCATAGACCCAGCTGGGGCAGATAGGGGGCACTG-GCCAGCCCCTCTGCATGCAAGGAAGAC---CTTGTCATCACTAGTCCCCTCATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30134118 1233 + 172585720 CTCAGTCAGAAAGGCCATTTATTTATGTTTCAAGATGCTCACTGCCTCCTTTGTTTTGTCTCCTTTGCAGGCCTTCTCT----CTTAGGCCTCTTCTCCTGAGGGTATGGATCCTGGGGGGAGATTAGTCACCTCCATGCTTCCATTCCTCCCCAGCCATAGTGGGGGCATCATGAGAGAAGCCAAGCCACTGGCCCAGGATCACCCGGCATTTATGGTGGCTGCTCTGGCACAGCTCCTTGCCTTTATAGCCCCTCCAGTGATCCAGAAGGCCCTCTTTCTCCCCAAAGGAGAGGTCGCATATAGGGCAATGGTAGCTCTTCTGCTTCCAGTGGGT---CTGCTGGTGTCTGACCAGCCTGGAAAATGAACTGAAAGACTTGCTGCAATGGAAGCAGTAGTTGGGCGGCTCTGTGAGGTGGGCCTTCTGGTGTCTGGAGAGATAGGATTTCTTGCTAAAAGTCAAAGGACAATGCGAGCAAGAGAAGACATTGAGTCTCGAGGGCTTCACTGGATGAGAGTTGGATCTGGCATCCTGACAGGGGGTTCCAATGATGGGTGCCTTGGTCCTGGT---------------------------------------CACAGA---TGCTTGGTTCTTAAGTACAGATGGCTGGTTCTGGGCCATAGGACCCTCAGTT--CTAAATATGGTTTCCTGAGACCTGGCCACTGGT------------------GCATGGTTCACATCCACAAGCCCCTGGATGGACCTCTGGCTTCTGGGGATAGGTGTCTGTAATTCAGCAGGGGTGCCTGGGATCCTCAAAGTACACTCTTGGTTTCCATCCACTGGCTCCTGGTTTTGGTGTATCTTCTGGTGGCGTTTGAGCTCAGACTGGTCCCGGAAGCTCTTCCCACACACGGAGCATGAATGGGGCCGGTAACCCAGATGGACACGGCGGTGACGACTTAGTCCAGAAGCATCACAGTAGGTCTTGTCACAGAGTGTGCAACAGAAGGGCCTCTCCCCAAGATGCATGCGCCTGTGATAGCTGAGGGACTTGGGGCTCCGAAACAACTTCCCACACTGG--CTGCAGCTGTTAGTCAGCTTGGGATTGTGAACAAACTGGTGGCTATAGAGGTAGGAGCGCCTGCTGAAACACTTGCCACAGATGCGGCAAAAAAAGGGTGGCCCAGCCTGGGATGCTTGAAGCACTTGGGTCCTGTCCATAGACCCAGCTGGGGCAGAGAGGGGGCACTG-GCCGGCCCCTCTGCATGCAAGGAAGAC---CTTGTCATCACTAGTCCCCTCATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29797575 1233 - 170955103 CTCAGTCAGAAAGGCCATTTATTTATGTTTCAAGATGCTCACTGCCTCCTTTGTTTTGTCTCCTTTGCAGGCCTTCTCT----CTTAGGCCTCTTCTCCTGAGGGTATGGATCCTGGGGGGAGATTAGTCACCTCCATGCTTCCATTCCTCCCCAGCCATAGTGGGGGCATCATGAGAGAAGCCAAGCCACTGGCCCAGGATCACCCGGCATTTATGGTGGCTGCTCTGGCACAGCTCCTTGCCTTTATAGCCCCTCCAGTGATCCAGAAGGCCCTCTTTCTCCCCAAAGGAGAGGTCGCATATAGGGCAATGGTAGCTCTTCTGCTTCCAGTGGGT---CTGCTGGTGTCTGACCAGCCTGGAAAATGAACTGAAAGACTTGCTGCAATGGAAGCAGTAGTTGGGCGGCTCTGTGAGGTGGGCCTTCTGGTGTCTGGAGAGATAGGATTTCTTGCTAAAAGTCAAAGGACAATGCGAGCAAGAGAAGACATTGAGTCTCGAGGGCTTCACTGGATGAGAGTTGGATCTGGCATCCTGACAGGGGGTTCCAATGATGGGTGCCTTGGTCCTGGT---------------------------------------CACAGA---TGCTTGGTTCTTAAGTACAGATGGCTGGTTCTGGGCCATAGGACCCTCAGTT--CTAAATATGGTTTCCTGAGACCTGGCCACTGGT------------------GCATGGTTCACATCCACAAGCCCCTGGATGGACCTCTGGCTTCTGGGGATAGGTGTCTGTAATTCAGCAGGGGTGCCTGGGATCCTCAAAGTACACTCTTGGTTTCCATCCACTGGCTCCTGGTTTTGGTGTATCTTCTGGTGGCGTTTGAGCTCAGACTGGTCCCGGAAGCTCTTCCCACACACGGAGCATGAATGGGGCCGGTAACCCAGATGGACACGGCGGTGACGACTTAGTCCAGAAGCATCACAGTAGGTCTTGTCACAGAGCGTGCAACAGAAGGGCCTCTCCCCAAGATGCATGCGCCTGTGATAGCTGAGGGACTTGGGGCTCCGAAACAACTTCCCACACTGG--CTGCAGCTGTTAGTCAGCTTGGGATTGTGAACAAACTGGTGGCTATAGAGGTAGGAGCGCCTGCTGAAACACTTGCCACAGATGCGGCAAAAAAAGGGTGGCCCAGCCTGGGATGCTTGAAGCACCTGGGTCCTGTCCATAGACCCAGCTGGGGCAGAGAGGGGGCACTG-GCCGGCCCCTCTGCATGCAAGGAAGAC---CTTGTCATCACTAGTCCCCTCATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2843147 1233 -   2996164 CTCAGTCAGAAAGGCCATTTATTTATGTTTCAAGATGCTCACTGCCTCCTTTGTTTTGTCTCCTTTGCAGGCCTTCTCT----CTTAGGCCTCTTCTCCTGAGGGTATGGATCCTGGGGGGAGATTAGTCACCTCCATGCTTCCATTCCTCCCCAGCCATAGTGGGGGCATCATGAGAGAAGCCAAGCCACTGGCCCAGGATCACCCGGCATTTATGGTGGCTGCTCTGGCACAGCTCCTTGCCTTTATAGCCCCTCCAGTGATCCAGAAGGCCCTCTTTCTCCCCAAAGGAGAGGTCGCATATAGGGCAATGGTAGCTCTTCTGCTTCCAGTGGGT---CTGCTGGTGTCTAACCAGCCTGGAAAATGAACTGAAAGACTTGCTGCAATGGAAGCAGTAGTTGGGCGGCTCTGTGAGGTGGGCCTTCTGGTGTCTGGAGAGATAGGATTTCTTGCTAAAAGTCAAAGGACAATGCGAGCAAGAGAAGACATTGAGTCTTGAGGGCTTCACTGGATGAGAGTTGGATCTGGCATCCTGACAGGGGGTTCCAATGATGGGTGCCTTGGTCCTGGT---------------------------------------CACAGA---TGCTTGGTTCTTAAGTACAGATGGCTGGTTCTGGGCCATAGGACCCTCAGTT--CTAAATATGGTTTCCTGAGACCTGGCCACTGGT------------------GCATGGTTCACATCCACAAGCCCCTGGATGGACCTCTGGCTTCTGGGGATAGGTGTCTGTAATTCAGCAGGGGTGCCTGGGATCCTCAAAGTACACTCTTGGTTTCCATCCACTGGCTCCTGGTTTTGGTGTATCTTCTGGTGGCGTTTGAGCTCAGACTGGTCCCGGAAGCTCTTCCCACACACGGAGCATGAATGGGGCCGGTAACCCAGATGGACACGGCGGTGACGACTTAGTCCAGAAGCATCACAGTAGGTCTTGTCACAGAGCGTGCAACAGAAGGGCCTCTCCCCAAGATGCATGCGCCTGTGATAGCTGAGGGACTTGGGGCTCCGAAACAACTTCCCACACTGG--CTGCAGCTGTTAGTCAGCTTGGGATTGTGAACAAACTGGTGGCTATAGAGGTAGGAGCGCCTGCTGAAACACTTGCCACAGATGCGGCAAAAAAAGGGTGGCCCAGCCTGGGATGCTTGAAGCACCTGGGTCCTGTCCATAGACCCAGCTGGGGCAGAGAGGGGGCACTG-GCCGGCCCCTCTGCATGCAAGGAAGAC---CTTGTCATCACTAGTCCCCTCATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     591794 1251 +    766320 CTCAGTCAGAAAGGCCATTTATTTATGTTTCAAGATGCTCACTGCCTCCTTTGTTTTGTCTCCTTTGCAGGCCTTCTCT----TTTAGGCCTCTTCTCCTGAGGGTATGGATCCTGGGGGGAGATTATTCACCTCCATGCTTCCATTCCTCCCCAGCTATAGTGGGGGCATCATGAGAGAAGCCAAGCCACTGGCCCAGGATCACCCGGCATTTATGGTGGCTGCTCTGGCACAGTTCCTTGCCTTTATAGCCCCTCCAGTGATCCAGAAGGCCCTCTTTCTCCCCAAAGGAGAGGTCACATATAGGGCAATGGTAGCTCTTCTGCTTCCAGTGGGT---CTGCTGGTGTCTGACCAGCCTGGAAAATGAACTGAAAGACTTGCTGCAATGGAAGCAGTAGTTGGGTGGCTCTGTGAGGTGGGCCTTCTGGTGTCTGGAGAGATAGGATTTCTTGCTAAAAGTCAAAGGACAATGCGAGCAAGAGAAGACATTGAGTCTCGAGGGCTTCACTGGATGAGAGTTGGATCTGGCATCCTGACAGGGGGTTCCAATGATGGGTGCCTCGGTCCTGGT---------------------------------------CACAGG---TACTTGGTTCTTAAGTACAGATGGCTGGTTCTGGGCCATAGGACCCTCAGTT--CTAAATATGATTTCCTGAGACCTGGCCACTGGTATGGTTTCCTGAGACCTGGCATGGTTCACATCCACAAGCCCCTGGATGGACCTCTGGCTTCTGGCGATAGGTGTTTGTAATTCAACAGGGGTGCCTGGAATCCTCAAAGTACACTCTTGGTTTCCTTCCACTGGCTCCTGGTTTTGGTGTATCTTCTGGTGGCGTTTGAGCTCAGACTGGTCCCGGAAGCTCTTCCCACACAGGGAGCATGAATGGGGCCGGTAACCCAGATGGACACGGCGGTGACGACTTAGTCCAGAAGCATCACAGTAGGTCTTGTCACAGAGCGTGCAACAGAAGGGCCTCTCCCCAAGATGCATGCGTCTGTGATAGCTGAGGGACTTGGGGCTCCGAAACAACTTCCCACACTGG--CTGCAGCTGTTAGTCAGCTTGGGATTGTGAACAAACTGGTGGCTATAGAGGTAGGAGCGCCTGCTGAAACACTTGCCACAGATGTGGCAAAAAAAGGGTGGCCTAGCCTGGGATGCTTGAAGCACCTGGGTCCTGTCCATAGACCCAACTGGGGCAGAGAGGGGGCACTG-GCTGGCCCCTCTGCATGCAAGGAAGAC---CTTGTCATCACTAGTCCCCTCATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29049040 1233 -  71996105 CTCAGTCAGAAAGGCCATTTATTTATGTTTCAAGATGCTCACTGCCTCCTTTGTTTTGTCTCCTTTGCAGGCCTTCTCT----CTTAGGCCTCTTCTCCTGAGGGTATGGATCCTGGGGGGAGATTATTCACCTCCATGCTTCCATTCCTCCCCAGCCATAGTGGGGGCATCATGAGAGAAGCCAAGCCACTGGCCCAGGATCACCCGGCATTTATGGTGGCTGCTCTGGCACAGCTCCTTGCCTTTATAGCCCCTCCAGTGATCCAGAAGGCCCTCTTTCTCCCCAAAGGAGAGGTCACATATAGGGCAATGGTAGCTCTTCTGCTTCCAGTGGGT---CTGCTGGTGTCTGACCAGCCTGGAAAATGAACTGAAAGACTTGCTGCAATGGAAGCAGTAGTTGGGCGACTCTGTGAGGTGGGCCTTCTGGTGTCTGGAGAGATAGGATTTCTTGCTAAAAGTCAAAGGACAATGCGAGCAAGAGAAGACATTGAGTCTCGAGGGCTTCACTGGATGAGAGTTGGATCTGGCATCCTGACAGGGGGTTCCAATGATGGGTGCCTCGGTCCTGGT---------------------------------------CACAGG---TGCTTGGTTCTTAAGTACGGATGGCTGGTTCTGGGCCATAGGACCCTCAGTT--CTAAATATGGTTTCCTGAGACCTGGCCACTGGT------------------GCATGGTTCACATCCACAAGCCCCTGGATGGACCTCTGGCTTCTGGCGATAGGTGTCTGTAATTCAGCAGGGGTGCCTGGAATCCTCAAAGTACACTCTTGGTTTCCATCCACTGGCTCCTGGTTTTGGTGTATCTTCTGGTGGCGTTTGAGCTCAGACTGGTCCCGGAAGCTCTTCCCACACACAGAGCATGAATGGGGCCGGTAACCCAGATGGACACGGCGGTGACGACTTAGTCCAGAAGCATCACAGTAGGTCTTGTCACAGAGCGTGCAACAGAAGGGCCTCTCCCCAAGATGCATGCGTCTGTGATAGCTGAGGGACTTGGGGCTCCGAAACAACTTCCCACACTGG--CTGCAGCTGTTAGTCAGCTTGGGATTGTGAACAAACTGGTGGCTATAGAGGTAGGAGCGCCTGCTGAAACACTTGCCACAGATGCGGCAAAAAAAGGGTGGCCCAGCCTGGGATGCTTGAAGCACCTGGGTCCTGTCCATAGACCCAGCTGGGGCAGAGAGGGGGCACTG-GCCGGCCCCTCTGCATGCAAGGAAGAC---CTTGTCATCACTAGTCCCCTCATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     253499 1233 +    290775 CTCAGTCAGAAAGGCCATTTATTTATGTTTCAAGATGCTCACTGCCTCCTTTGTTTTGTCTCCTTTGCAGGCCTTCTCT----CTTAGGCCTCTTCTTCTGAGGGTATGGATCCTGGGGGGAGATTATTCACCTCCATGCTTCCATTCCTCCCCAGCTATAGTGGGGGCATCATGAGAGAAGCCAAGCCACTGGCCCAGGATCACCCGGCATTTATGGTGGCTGCTCTGGCACAGTTCCTTGCCTTTATAGCCCCTCCAGTGATCCAGAAGGCCCTCTTTCTCCCCAAAGGAGAGATCACATATAGGGCAATGGTAGCTCTTCTGCTTCCAGTGGGT---CTGCTGGTGTCTGACCAGCCTGGAAAATGAACTGAAAGACTTGCTGCAATGGAAGCAGTAGTTGGGTGGCTCTGTGAGGTGGGCCTTCTGGTGTCTGGAGAGATAGGATTTCTTGCTAAAAGTCAAAGGACAATGCGAGCAAGAGAAGACATTGAGTCTCGAGGGCTTCACTGGATGAGAGTTGGATCTGGCATCCTGACAGGGGGTTCCAATGATGGGTGCCTCGGTCCTGGT---------------------------------------CACAGG---TGCTTGGTTCTTAAGTACAGATGGCTGGTTCTGGGCCATAGGACCCTCAGTT--CTAAATATGGTTTCCTGAGACCTGGCCACTGGT------------------GCATGGTTCACATCCACAAGCCCCTGGATGGACCTCTGGCTTCTGGCAAGAGGTGTCTGTAATTCAACAGGGGTGCCTGGAATCCTCAAAGTACACTCTTGGTTTCCATCCACTGGCTCCTGGTTTTGGTGTATCTTCTGGTGGCGTTTGAGTTCAGACTGGTCCCGGAAGCTCTTCCCACACACGGAGCATGAATGGGGCCGGTAACCCAGATGGACACGGCGGTGACGACTTAGTCCAGAAGCATCACAGTAGGTCTTGTCACAGAGCGTGCAACAGAAGGGCCTCTCCCCAAGATGCATGCGTCTGTGATAGCTGAGGGACTTGGGGCTCCGAAACAACTTCCCACACTGG--CTGCAGCTGTTAGTCAGCTTGGGATTGTGAACAAACTGGTGGCTATAGAGGTAGGAGCGCCTGCTGAAACACTTGCCACAGATGCGGCAAAAAAAGGGTGGCCTAGCCTGGGATGCTTGAAGCACCTGGGTCCTGTCCATAGACCCAACTGGGGCAGAGAGGGGGCACTG-GCCGGCCCCTCTGCATGCAAAGAAGAC---CTTGTCATCACTAGTCCCCTCATC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2687007 1233 -   3067355 CTCAGTCAGAAAGACCATTTATTTATGTTTCAAGATGCTCACTGCCTCCTTTGTTTTGTCTCCTTTGCAGGCCTTCTCT----CTTAGGCCTCTTCTCCTGAGGGTATGGATCCTGGGGGGAGATTATTCACCTCCATGCTTCCATTCCTCCCCAGCCATAGTAGGGGCATCATGAGAGAAGCCAAGCCACTGGCCCAGGATCACCCGGCATTTATGGTGGCTGCTCTGGCACAGTTCCTTGCCTTTATAGCCCCTCCAGTGATCCATAAGGCCCTCTTTCTCCCCAAAGGAGAGGTCACATATAGGGCAATGGTAGCTCTTCTGCTTCCAGTGGGT---CTGCTGGTGTCTGACCAGCCTGGAAAATGAACTGAAAGACTTGCTGCAATGGAAGCAGTAGTTGGACGGCTCTGTGAGGTGGGCCTTCTGGTGTCTGGAGAGATAGGATTTCTTGCTAAAAGTCAAAGGACAATGCGAGCAAGAGAAGACATTGAGTCTCGAGGGCTTCACTGGATGAGAGTTGGATCTGGCATCCTGACAGGGGGTTCCAATGATGGGTGCCTCGGTCCTGGT---------------------------------------CACAGG---TGCTTGGTTCTTAAGTACAGATGGCTGGTTCTGGGCCATAGGACCCTCAGTT--CTAAATATGGTTTCCTGAGACCTGGCCACTGGT------------------GCATGGTTCACATCCACAAGCCCCTGGATGGACCTCTGGCTTCTGGCGATAGGTGTCTGTAATTCAGCAGGGGTGCCTGGAATCCTCAAAGTACACTCTTGGTTTCCATCCACTGGCTCCTGGTTTTGGTGTATCTTCTGGTGGCGTTTGAGCTCAGACTGGTCCCGGAAGCTCTTCCCACACACGGAGCATGAATGGGGCCGATAACCCAGATGGACGCGGCGGTGACGACTTAGTCCAGAAGCATCACAGTAGGTCTTGTCACAGAGCGTGCAACAGAAGGGCCTCTCACCAAGATGCATGCGTCTGTGATAGCTGAGGGACTTGGGGCTCCGAAACAACTTCCCACACTGG--CTGCAGCTGTTAGTCAGCTTAGGATTGTGAACAAACTGGTGGCTATAGAGGTAGGAGCGCCTGCTGAAACACTTGCCACAGATGTGGCAAAAAAAGGGTGGCCCAGCCTGGGATGCTTGAAGCACCTGGGTCCTGTCCATAGACCCAGCTGGGTCAGAGAGGGGGCACTG-GCTGGCCCCTCTGCATGCAAGGAAGAC---CTTGTCATCACTAGTCCCCTCATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      65129 1224 +    132061 CTCAGTAGGAAAGGCCGTTTATTTATGTTTCAAAATGCTCACTGCCTCCTTTGTTTTGTCTCCTTTGCATGCCTTCTCC----GTTATGCCTCTTCTCCTGGGGCTGTGGATCCTGGGGGGAGACCCATCACCTCCATGCTTCCATTCTTCCCCAGCTACAGTGAGGGCATCATGAGAGAAGCCAAGCCACTGGCCCAGGATCACCCGGCATTTACCGTGGCTGTCTGGGCACAGTTCCTTGCCTTTAGAGCCCCTCCAGTGACCCATAAGGCCCTCTTTCTCCCTAAAGCAGAGGTCACAGATAGGGCAACGGTAGCTCTTCTGCTTCCAGTGGGTCTGCTGCTGGTGTCTGACCAGCTTGGAAAATGAGCTGAAAGACTTGCTACAATGAAAGCAGTAGTTGGGTGGCTCTATGAGGTGGGTCTTCTTGTGGCTGGAGAGATAGGATTTCTTGCTAAAAGTCAAAGGACAATGGGGGCAAGAGAAGACATTGAGTCTTGAGGGCTTCACTGGATAAGAATTGTATCTGTCATCCTGACAAGGGGTTCCAGTGATTGGTGCCTGGGTCCTGGT---------------------------------------CACAGG---CACTTGGTTCTTAAGTACAGATGGCTGGTTCTGGACCATAGGACCCTCAGTT--CTAAATATGGATTCCTGGGACCTGGCCCCTGGT------------------GCATGGTCCATGTCCACAAGCCCCTGGATGGACCTCTGGCTTCTGGTGATGGCTGTCTGGAATCCAGCAGGGGTGCCTGGAGTCCTCAAAGTATACTCTTGGTTTCCATCCACTGCCTCCTGGTTTTGGTGTGTCCTCTGGTGGCGTTTGAGCTCAGACTGGTCGCGGAAGCTCTTCCCACACACGGAACATGAATGGGGCCGGTAACCCAGATGGACGCGGCGGTGACGACTTAGACCAGAAGCATCACAGTAGGTCTTGTCACAGAGCGTGCAACAGAAGGGCCTCTCCCCAAGATGCATGCGTCTGTGATAGCTGAGGGACTTGGGACTCCGAAACAGCTTCCCACACTGG--CTGCAGCTATTAGTCCGCTTGGGATTGTGAACAAACTGGTGGCTGTAGAGGTAGGAGCGCCTACTGAAACACTTGCCGCAGGTGTGGCAAAAAAAAGGTGGCCCACCCCGTGATGCTTGAAGCACCCGGGTCCTGTCCATACACCCAGTTGGGGCAGAGAGG-------------GCCCCTCTGCATGCGAGGAAGAC---CTTGTCCTCACTAGTTCCTTCATC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            19325 1220 -    110772 CTCAGACAAAAAGGCCATTTATTTATGTTTCAAGATGCTCACTGCCTCCTTTGTTTTGTCTTCTTTGCATGCCTTCTCC----CTTAGGCCTCTTCTCCCGGGGGTATGGATCCT-GGGGGAGACCCATAACCTCCATGCTTCCATTCCTCCCCAGCCACAGTGAGGGCATCATGAGAGAAGCCAAGCCACTGGCCCAGGATCACCCGGCATTTATGGTGGCTGTCCGGGCACAGTTCCTTGCCTTTAGAGCCCTTCCAGTGACCCATAAGGCCCTCTTTCTCCCTAAAGCAGAGGTCGCAGATAGGGCAACGGTAGCTCTTCTGCTTCCAGTGGGT---CTGCTGGTGTCTGACCAGCTTGGAAAATGAGCTGAAAGACTTGCCACAATGGAAGCAGTAGTTGGGTGGCTCTGTGAGGTGGGTCTTCTGGTGGCTGGAGAGATAGGATTTCTTGCTAAAAGTCAAAGGACAATGGGGACAAGAGAAGACATGGAATCTCGAGGGCTTAACTGGATGAGAATTGGATCTGTCATCCTGATGGGGGGTTCCAGTGATTGGTGCCTGGGTGCTGGT---------------------------------------CACAGG---CGCTTGGTTCTTAAGCACAGATGGCTGGTTCTGAACCATAGGACCCTCAGTT--CTAAATGTGGATTCCTGGGACCTGGCCCCTGGT------------------GCATGGTCCACATCCACAAGCCCCTGGATGGACCTCTGGCTTCTGGCGATGGGTGCCTGGAATTCAGCAGGGGTGCCTGGAGTCCTCAAAGTACACTCCTGGTTTCCATCCACTGGCTCCTGGTTTTGGTGTATCCTCTGGTGGCGTTTGAGCTCAGACTGGTCGCGGAAGCTCTTGCCACACACGGAACATGAATGGGGCCGGTAACCCAGATGGACGCGGCGGTGACGACTTAGTCCAGAAGCATCACAGTAGGTCTTGTCACAGAGCGTGCAACAGAAGGGCCTCTCCCCAAGATGCATGCGTCTGTGATAGCTGAGGGACTTGGGACTCCGAAACAGCTTCCCACACTGG--CTGCAGCTATTAGTCCGCTTGGGATTGTGAACAAACTGGTGGCTATAGAGGTAGGAGCGCTTACTGAAACACTTGCCACAGGTGTGGCAGAAGAAAGGTGGCCCACCCCGTGATGCTTGAAGCACCCGGGTCCTGTCCATAGACGCAGCTGGGGCAGAGAGG-------------GCCCCACTGCATGCAAGGAAGAC---CTTGTCCTCACTAGTCCCCTCATT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     283810 1223 -   1771730 CTCAGGCAGAAATGCCATTTATTTATGTTTCAAGATGCTCACTGCCTCCTTTGTTTTGTCTCCTTTGCATGCCCTCTCC----CTTAAGCCTCTTCTCCTGGGGGTATAGATCCT-GGGGGAGACCCATCACCTCCATGCTTCCGTTCCTCCCCAGCCACAGTGAGGGCATCATGagagaagccaagccactggcccaggatcacccggcatttacagtggctgtccgggcacagttccttgcctttagagcccctccagtgacccataaggccctctttctccctaAAGCAGAGGTCGCAGATAGGGCAACGGTAGCTCTTCTGCTTCCAGTGGGTCTGCTGCTGGTGTCTGACCAGCTTGGATAATGAGCTGGAAGACTTGCCACAATGGAAGCAATAGTTGGGTGGCTCTGTGAGGTGGGTCTTCTGGTGGCTGTGGAGAGAGGACTTCTTGCTAAAAGTCAAAGGACAATGGGAGCAAGAGAAGACATGGAGTCTTGAGGGCTTCACTGGATGAGAACTGGATCTGTCATCCTGACAGGGGGTTCCAGTGATTGGTGCCTGGGTTCTGGT---------------------------------------CACAGG---CGCTTGGTTCTTCAGCATAGATGGCTGGTTCTGGACCATAGGGCCCTCAGTT--CTAAATGTGGATTCCTGGGACCTGGGCCCTGGT------------------GCATGGTCCACATCCACAAGTCCCTGGATGGACCTCTGGCTTCTGGCGATGGGTGTCTGGAATTCAGCAGGGGTGCCTGGAGTCCTCAAAGTACACTCTTGGTTTCCATCCACTGGCTCCTGGTTTTGGTGTATCCTCTGGTGGCGTTTGAGCTCAGACTGGTCGCGGAAGCTCTTGCCACACACGGAACATGAATGGGGCCGATAACCCAGATGGACGCGGCGGTGACGACTTAGTCCGGAAGCATCACAGTAGGTCTTGTCACAGAGCGTGCAACAGAAGGGCCTCTCCCCAAGATGCATGCGTCTGTGATAGCTGAGGGACTTGGGACTCCGAAACAGCTTCCCACACTGG--CTGCAGCTATTAGTCCGCTTGGGATTGTGAACAAACTGGTGGCTATAGAGGTAGGAGCGCCTACTGAAACACTTGCCACAGGTGTGGCAAAAAAAAGGTGGCCCACCCCGTGATGCTTGAAGCACCCGGGTCCTGTCCATAGACCCAGCTGGGGCAGAGAGG-------------GTCCCTCTGCATGCAAGGAAGAC---CTTGTCCTCACTGGTCCCCTCATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     354586 1221 -    457564 CTCAGGCAGAAAGGCCATTTATTTATGTTTCAAGATGCTCACTGCCTCCTTTGTTTTGTCTCCTTTGCATGCCTTCTCC----CTTAGGCCTCTTCT---GGGGGTATGGATCCTGGGGGGAGACCCATCACCTCCATGCTTCCATTCCTTCCCAGCCACAGTGAGGGCATCATGagagaagccaagccactggcccaggatcacccggcatttacagtggctgtccgggcacagttccttgcctttagagcccctccagtgacccataaggccctctttctccctaAAGCAGAGGTCGCAGATAGGGCAACGGTAGCTCTTCTGCTTCCAGTGGGTCTGCTGCTGGTGTCTGACCAGTTTGGAAAATGAGCTGAAAGACTTGCCACAATGGAGGCAGTGGTTGGGTGGCTCTGTGAGGTGGGTCTTCTGGTGGCTGGAGAGATAGGATTTCTTGCTAAAAGTCAAAGGACAATGGGGGCAAGAGAAGACACTGAGTCTTGAGGGCTCCACTGGATAAGAATTGGATCTGTCATCCTGACAGGGAGTTCCAGTGATTGCTGCCTCAGTTCTGGT---------------------------------------CACAGG---CGCTTGGTTCTTAAGAACAGATGGCTGGTTCTGGACCATAGGACCCTCAGTT--CTAAATGTGGATTCCTGGGACCTGGCCCCTGGT------------------GCATGGTCCACATCCACAAGCCCCTGGATGGACCTCTGGCTTCTGGCGATGGGTGCCTGGAATTCAGCAGAGGTGCCTGGAGTCCTCAAAGTACACTCCTGGTTTCCATCCACTGGCTCCTGGTTTTGGTGTATCCTCTGGTGGCGTTTGAGCTCAGACTGGTCACGGAAGCTCTTCCCACACACGGAACATGAATGGGGCCGGTAACCCAGATGAACGCGGCGGTGACGACTTAGTCCAGAAGCATCACAGTAGGTCTTGTCACAGAGCGTGCAACAGAAGGGCCTCTCCCCAAGATGCATGCGTCTGTGATAGCTGAGGGACTTGGGGCTCCGAAACAACTTCCCACACTGG--CTGCAGCTATTAGTCCGCTTGGGATTGTGAACAAACTGGTGGCTATAGAGATAGGAGCGCCTACTGAAACACTTGCCACAGGTGTGGCAAAAAAAAGGTGGCCCACCCCGTGATGCTTGAAGCACCCGGGTCCTGTCCATAGACCCAGCTGGGGCAGAGAGG-------------GCCCCTCTGCATGCAAGGAAGGC---CTTGTCCTCACTAGTCCCCTCATC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               197013 1213 + 123392446 CTCAGTCAGGAAGGCCATTTACTTATGTTTCAAGA-CCCTGCTGCCTCTTCTGCTTTGCC-CGCTTG----------------------CCCCGCCTCCGGGGCGTGTGGCTCCGGGGAGGAGACTCATTTCCTACACGCTTTTCATCCTTTCCAGCCATGGGGGCGGCATCGTGGAAGAAGCCAAGCCACTGGCCCAGGGTGACCCAGCATTTACGACTGCTGCCCAGGCACAGTTCCCGGCCTTTGTAGCCCTTCCAGTGACCCACgaggccctccttctctccaaagcacaggtcacagatcgggcagcggtagATCTTCTGCTTCCAGTGGGT---CTGTTGGTGCCTGGCCAGCCTGGAGAATGAACTGAAGGACTTGGCGCAATGGAAGCAGCAGTTAAGCTGCTCTGTGGGATGGGTCTTCTGGTGGCTGGAAAGATAGTCTTTCGTGCTAAAAGTCGAGGGACAATGGGGGCAAGA---GACCATGAATCGTGAGGGCTTCACTGGATGAAAGTTGGATCTGCTACCTAGGCAGGGGGCCTTAGTGTTAGGTGCCTGGGTGCTGGT---------------------------------------CGCAGG---GGCTTCGTTCTCAAGCACAGGGGGTTGGGTCTGGGCCACAGGACACTCAGTT--CTAAGTGTGGATTCCTGGGTCCTGGCCACCGGT------------------GCGTGGCCCACACCCACAAGCTCCTGGACCGCCCCTGGGCTTCCAATGATGGGCGTCTGGCACCCAGCGGTGGCGCCTGGAATCCTCACAGTGCAGTCCCGGGTTCCGGCCACCGGCTCTTGGGTTTGGTGTATCTTCTGGTGGCGTTTGACCTCAGACTGGTCCCGGAAGGCCTTCCCGCACACAGAGCACGAGTGGGGCCGGTAACCCAGATGGACGCGGCGGTGGCGACTCAGCCCAGAAGCATCACAGTAGGTCTTGTCACAGAGCAAGCAAGAGAAGGGCCTCTCCCCTAGGTGCACGCGTCGGTGGTAGCTAAGGGACTTGGGGGTCCGGAACAACTTCCCGCACTTC--CTGCAGCTGTTAGTCTGCTTGGGGCTGTGGACAAACCGGTGGCTGTAGAGGGAGGAGCGCCTGCTGAAACCCTTGCCACAGGCGTGGCAGAAAAAGGGTGGCCCAGCCTGGGATGCTTGGAACACGGGGGTCCTGCCCACAGACCTGGCTAGAGCAGAGGACGGGCACTG-GCAGGCCCCTCCGCAAGCGAGAGTGACCTTCTTGTCGTCACTAGTCCCCTCATC
i micMur3.chr6             C 0 I 120
s proCoq1.NW_012152574v1     657714 1218 +    730504 CTCAGTCGAGAAGGCCATTTATTTATGTTTCAAGACCCCCGCTGCCTCCTCTGCTTTGCCTCCCTTG----------------------CCCCGCCTCCGGGGCCTGTGGATCCCGGGAGGAGACCCCTTTCCTACACGCTTCCCATCCTTCCCAGCCATAGGGGAGGCATCGTGGAAGAAGCCAAGCCACTGGCCCAGGGTGACCCAGCATTTCCGAGCGCTGCCCAGGCACAGTTCCCTGCCCTTATAGCCCTTCCAGTGACCCACGAGGCCCTCCTTCTCTCCAAAGCAGAGGTCGCAGATTGGGCAGCGGTAGATCTTCTGCTTCCAGTGGGT---CTGCTGGTGCCTGACCAGCCTGGAGAATGAGCTGAAGCACTTGGCGCAATGGAAGCAGCAGTTAAGCTGCTCTGTGGGGTGGGTCTTCTGGTGGCTGGAAAGATAGTCTTTCGTGCTAAAAGTCAGGGGACAATGGGGGGAAGAGAGGACCGTGAGCCGTGAGGGCCTCACGGGATGAGAGTTGGATGTGCTACCTAGGCAGGGGGCTTTAGCGTTAGGCGCCTGGGTCCTGGT---------------------------------------CACAGG---GGCTTGGTTCCCAAGCACAGGGGACTGGGGCTGGGCCACAGGACCCTCAGTT--CTTAATGTGGATCCTTGGGTCCTGGCCACTGGT------------------GCGTGGCCCACACCCACAGGCTCCTGGACGGCCCCTGGGCTTCTGATGATGGGCATCTGCCATCCAGCAGTGGCGCCTGGAATCCTTACAGTACAATCCCAGGTTCCAGCCACCAGCTCTTGGTTTTGGTGTATCTTCTGGTGGCGTTTGAGCTCAGACTGGTCCCGGAAGGCCTTGCCACACACGGAGCATGAGTGGGGCCGGTAACCCAGATGGACACGGCGGTGGCGACTCAGTCCAGAAGCATCACAATAGGTCTTGTCGCAGAGAGAGCAAGAGAACGGCCTCTCCCCAAGGTGCGCGCGTCTGTGGTAGCTGAGGGACTTGGGGGTCCGAAACAACTTCCCACACTTC--CCGCAGCTGTTAGTCCGCTTGGGGCTGTGGACAAACTGGTGGCTATAGAGGGAGGAGCGCCTGCTGAAACTCTTGCCACAGGTGTGGCAAAAAAAGGGTGGCCCAGCCTGGGATACTCGGAACATGGGGGTCCTGCCCATAGACCTGGCTGGAGCAGAGGATGGGCACCG-GCAGGCCCCTCCGCAAGCAAGAGTGACCTTCTTGTGGTCACTAGTCCCCTCATC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           163908 1151 +  18854210 CTCAGTCGGAAAGGCCATATATCTATGTTTCAAGATGCTCACTGCTTCCTTTGCTTTGTCTCCTTTGCATGTCTTCTCT----GTT-GCCTCCCCCTTCTGGGAGTTTGGATCCTAGGAGGAGACCCATTTCCTACATGCTTCCCATCCTTCCCAGACATAGGGGAGGCATCATGGAAGAAACCAAGCCACTGGCCCAGGGTGACCCAGCACTTCCGAGCACTGCCCAGGCATAGTTCCTTGCCTTGATAGCCCTTCCAGTGACCCAGAAGGCCCTCCTTCTCTCCAAAGCAGAGGTCACAGATAGGGCAACGGTAGATCTTCTGCTTCCAGTGGGT---CTGCTGGTGCCTGACCAGCCTGGAGAATGAACTGAAGGACTTGCTACAATGGAAGCAGCTGTGAAGCTGCTCTTTGAGATGGGCCTTCTGGTGGCTGGAAAGATAATCTTGCTTGCTAAAAGTCAAGGGACAATGGGGGCAAGAGAAGACCTTGAATCTTGAGGGCTTCACTGACTGAAAGCTGGATCTGGTATCTAGGCAGGGAGCTTTAGTGTTAGATGCC--------------------------------------------------------------------------------------------------------------------------------TGGGTTCTGGCCACTGGT------------------ATGTGGCTCATATCCACAAGCTCCTGGATGGATCTTTGGCTTCTGATGATGGGTGTCTGGAATCTAGCAGTGGTACCTGGAATCCTCACAATACAATCCTGGTTTCCACCCACTGACTCTTGATTTTGGTGTATCTTCTGGTGGCGTTTGAGCTCAGACTGGTCCCGGAAGCTCTTCCCACACATGGAGCATGAGTGGGGCCGGTAACCCAGATGGACACGGCGGTGACGACTCAGTCCAGAAGCATCACAATAGGTCTTATCACAGAGTGAGCAACAGAAGGGCCTCTCCCCAAGATGCATACGTGTGTGATGGCTGAGGGACTTGGGGCTCTGAAAAAACTTCCCACACTTG--CTGCAGCTATTAGTCCACTTGGGGCTATGAACAAACTGATGGCTAGAGAGGTAGGAGCGTCTGCTAAAACGCTTGCCACAGGTATGGCAAGGAAAGGGTGGCTGTGCCTTGTATGCTTGGAACACTGGGGTCCTGTCCATAGACTCAGCTGGAGCGGAGGGTGGGCACTG-GCAGGCCACTCTGCAGCTAAGAGTGTCCTTCTTGTCATCACTAGTCCCCTCATC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57976824  988 -  94987271 CTTTCCCAGACAGGCC------TTCTGTTTCAGGATTCTCAGTGCAGGCACGTTTCCGTCTTCTCCTCCTGGATTCCAT----------CCTCTTTCCCGAGGAGT-------------------------CCCTTACTTTAAAAATATTTCCCAGCACCACGGGT----TCATGAAGATAGCCGAGCAAATGACCCAGGATTTCCCAGCATTTACTGAATCTGATTGG---------------TCTTTGGCAGCACAAGTGATCCAGCAGGCTCTCCTTTCCCCTAAAGGAGCTGTCACAGACGGGGCAAGTGTAGATCTTTTGCATTC--TGAGT---GTGTTGG-------------------ATGAGTGGGCCGACTCTTTGCAGCAGAAGTGCTGGTTGGGTTGACGTCTGAAGTGGATCTTGAGGTGGGTTAAGAGACAGGTTCTCATGGTAAACGTTATGTGACAATAGGGACAAGA---GATCTTTTCTCTTGAACGGACCACTGTAATAGAGTTGGATCTGACATTCAGGGTCGAGGCTCCGCTGTTCCGTGCCTTAGCCCTGGC---------------------------------------CACTGG---TCCCTGGATC--------------------------------ACTTTCACATACTTGAGGGCGGGCGCTTGGGATCTAGGTGTTGTA------------------GGTGGAACCCTACTCTTCAGCCTctggttg---------------------------------ctagcctggttgccag------------------cctggttgctagcTGCTGGCTT---GTTTTGGTGTACCTTCAGGTGACGGTTGACCTCAGACTGATCCCGGAAACACTTTCCACACTCAGGGCATGAACGGGGCCTATAACCTAAATGAGCACGTCGGTGACGGCTCAGTCCAGAAGCATCACGGTAAGTCTTGCCACAGAAATTACAAAAGAAAGGCCTCTCTCCACGATGC-TGAGCC--TTGTAGCCCTTGCCTTTGCGGCTTTG----------------TGGATTTGTGACTGCCAGCCT-CCGGGACCTCACAGGAAACTGGTGATTAAAGAGGAAGGTGTTCTTTTTGAAACATTTGCCACAGGTCAGACAGAAAAAGAATGGTCCACCTTTGAATAC--------------CCCTGTGCA---------------------------ACTG-GAGGACTTCTC-------------------CTGCTCCTCGTT------CTTATC
i mm10.chr17               I 306 C 0
s canFam3.chr35            26267457 1240 +  26524999 CTCCATTGGG-------------TGTGCACTGAGCCCCTCATGGCCTCATTTGCTCTCTCTCCTCTG-GTGCCTCCTCCCCACCCTCCCCACCCTCTCCTGGGAGCCTGGAT-CTGGGGGCAGATCCATC----------------TCCTTCCCAGCCCAACTGGCAGCACCATGAAAAAAGCCGAGCCATTGACCCAGGATGGCCCAGCAGGCCTGGAGATTGCCCAGGCACGGGTCCATGGTTTTGGAGCCCCCCCAGTGGCCCATGAGGCCATCTCTATCCCTGAAGCAGACGTCGCAGACAGGGCAACGGTAGACCTTCTGCCTCCAGTGTGT---CTGCTGGTGCCTGACCAGCCCTGACAATGAGCTGAAGGACTTGCCACAGCGGAAGCAGCAGCTCGGCTGCTCAGGGATGTGGGCTTTCTGGTGGCTAAAGAGATAGGCTTTCTTGCTAAAAGTCAGAGGGCAGTGAGGGCAAGAGAAGAC-CTGATTCTTGAAGGCTTGGTGGGA-GGCAGTTGGACCTGGTATCCAGGCAGAGGGCTCTCATGCCGGGTGTCTGTGTCCTGGTGCCAGGCCCCAGGGTTGCACCAGCTGGTGCCCGCCATCCCACAGGGATCACCTGCTTCCTATCTATGCCTGGCTGGGTCTGAGCCATAGGACCCTTGTCT--GCAATGATGGGTTCTTGGGTCCTGGTCAGCAGG------------------GCATGGTCCACGGCCACAAGCTCCTGGCTGGCCCCCTGGCTCCAGCCAGCATGTGTCTGAGATCCAGCTCGAGGGTCTGGGGCCCTCACAATGCACTTCTGGTCTCTGGCCCCCAGCTCCTGGTCTGGGTGTATCTTCTGGTGGCGTTTCAGCTCTGACCGGTCCCGGAAGCCCTTCCCACAGAAGGGGCACGAGTGGGGCCGGTAGCCCAAGTGGACACGGCGGTGGCGGCTCAGCCCAGATGCATCACAATAGGTCTTGTCACAGAGCGGGCAGCAGAAGGGCCTCTCCCCAAGATGTATGCGCCTGTGATAGCCGAGCTCCTTGGGGTTCCGGAAGGACTTCCCGCAATGG--CTGCAGCTGTTGGTCTTGTTGGGAATGTGAACAAACTGGTGGCTATGCAGGTTGGAGTGCTTGCTGAAAGTCCTGCCACAGATGTGGCAGAGAAAGGGCCTGCCAGCGCGGGATGCTGGGATCACAGGGGCCCTGTGTGGGGTCCCTGCTGGAGCAGAGG-------CTGCACCTGCCCCCCATCCATCAAGGGAGGC---CTGAGCTCTACCAGCCCGGTCATC
i canFam3.chr35            C 0 C 0
e dasNov3.JH582591            87028 3996 +    102524 M

a score=109080.000000
s hg38.chr6_GL000254v2_alt   939088 7 +   4827813 TCTCAGA
s panTro5.chr6             29901845 7 + 175400573 TCTCAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30135494 7 + 173848474 TCTCAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935120 7 +   6154872 TCTCAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652375 7 + 122973662 TCTCAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135351 7 + 172585720 TCTCAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29798808 7 - 170955103 TCTCAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2844380 7 -   2996164 TCTCAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     593045 7 +    766320 TCTCAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29050273 7 -  71996105 TCTCAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     254732 7 +    290775 TCTCAGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688240 7 -   3067355 TCTCAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      66353 7 +    132061 TCTCAGA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            20545 7 -    110772 TCTCAGA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     285033 7 -   1771730 TCTCAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     355807 7 -    457564 TCTCAGA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     658932 7 +    730504 TCTCAGA
i proCoq1.NW_012152574v1   C 0 I 119
s otoGar3.GL873550           165059 7 +  18854210 TTTCAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57977812 7 -  94987271 TTGCAGA
i mm10.chr17               C 0 I 1
s canFam3.chr35            26268697 7 +  26524999 TCCCAGT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               198226 120 + 123392446 I
e dasNov3.JH582591            87028 3996 +    102524 M

a score=660043.000000
s hg38.chr6_GL000254v2_alt   939095 57 +   4827813 --CTGGGATGTTGTTCTCGAAGCTCTTTCTTCTTGCCTTCTACAGTGAATGAGGAAGAA
s panTro5.chr6             29901852 57 + 175400573 --CTGGGATGTTGTTCTCGAAGCTCTTTCTTCTTGCCTTCTACAGTGAATGAGGAAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30135501 57 + 173848474 --CTGGGATGTTGTTCTCGAAGCTCTTTCTTCTTGCCTTCTACAGTGAATGAGGAAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935127 57 +   6154872 --CTGGGATGTTGTTCTCGAAGCTCTTTCTCCTTGCCTTCTACAGTGAATGAGGAAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652382 57 + 122973662 --CTGGGTTGTTGTTCTCGAAGCTCTTTCTTCTTGCCTTCTATAGTGAATGAGGAAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135358 57 + 172585720 --CTGGGATGTTGTTCTCGAAGCTCTTTCTTCTTACCTTCTGTAGTGAATGAGGAAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29798815 57 - 170955103 --CTGGGATGTTGTTCTCGAAGCTCTTTCTTCTTACCTTCTGTAGTGAATGAGGAAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2844387 57 -   2996164 --CTGGGATGTTGTTCTCGAAGCTCTTTCTTCTTACCTTCTGTAGTGAATGAGGAAGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     593052 57 +    766320 --CTGGGATGTTGTTCTCGAAGCTCTTTCTTCTTACCTTCTGTAGTGAATGAGGAAGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29050280 57 -  71996105 --CTGGAATGTTGTTCTCGAAGCTCTTTCTTCTTACCTTCTGTAGTGAATGAGGAAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     254739 57 +    290775 --CTGGGATGTTGTTCTCGAAGCTCTTTCTTCTTACCTTCTGTAGTGAATGAGGAAGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688247 57 -   3067355 --CTGGGATGTTGTTCTTGAAGCTCTTTCTTCTCACCTTCTGTAGTGAATGAGGAAGAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      66360 57 +    132061 --CTGTGATCTTGTTCTTGAAGCTCTTTCTTCTTGCCTTCTGTAATGAATGAAAAAGAA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            20552 57 -    110772 --CTGGGATCTTGTCCTCGAAGCTCTTTCTTCTTACCTTCTGTAGTGAATGAGGAAGAA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     285040 54 -   1771730 --CTGGGATCTTGTTCTCGAAGCTCTTTCTTCTTGCCTTCTGTAGTGAATG---AAGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     355814 57 -    457564 --CTGGGATCTTGTTCTCGAAGCTCTTTCTTCATGCCTTCTGTAGTGAATGAAGAAGAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           165066 54 +  18854210 --CTCTGCTTTTGTTCACAAAGCTC---CTCCTTGTCTCCTGTAATGAAAGGAGAGTAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57977820 53 -  94987271 --CTGAGCTA-GGTTCTTGAGG---TTTCTTCTTGCTTCCTATAGTAGAGGAGGGAAAA
i mm10.chr17               I 1 C 0
s canFam3.chr35            26268704 57 +  26524999 GCCTGAGTC--TCTTCCTGACATGCCTCCTGCCTGCCGCCTGCAATAGAGGAGGAAAAA
i canFam3.chr35            C 0 I 323
e micMur3.chr6               198226 120 + 123392446 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     658939 119 +    730504 I

a score=247187.000000
s hg38.chr6_GL000254v2_alt   939152 24 +   4827813 TAACACAAAATT-CACTGTAAGAAC
s panTro5.chr6             29901909 24 + 175400573 TAACACAAAATT-CACTGTAAGAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30135558 24 + 173848474 TAACACAAAATT-CACTGTAAGAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935184 24 +   6154872 TAACACAAAATT-CACTGTAAGAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652439 24 + 122973662 TAACACAAAATT-CACTATAAGAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135415 25 + 172585720 TAACACAAAATTCCACTATAAGAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29798872 25 - 170955103 TAACACAAAATTCCACTATAAGAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2844444 25 -   2996164 TAACACAAAATTCCACTATAAGAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     593109 25 +    766320 TAACACAAAATTCCACTATAAGAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29050337 25 -  71996105 TAACACAAAATTTCACTATAAGAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     254796 25 +    290775 TAACACAAAATTCCACTATAAGAAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688304 25 -   3067355 TAACACAAAATTCCACTATAAGAAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      66417 24 +    132061 TAACACAAAATT-CACTTTAAGAAC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            20609 24 -    110772 TAACACAAAATT-CACTTTAAGAAC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     285094 24 -   1771730 TAACACAAAATT-CACTTTAAGAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     355871 24 -    457564 TAACACAAAATT-CACTTTAAGAAC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           165120 24 +  18854210 CCCAATAAGCTT-CACTATGAGAAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57977873 21 -  94987271 T---ACACAGTT-CATTATGAGAAT
i mm10.chr17               C 0 C 0
e micMur3.chr6               198226 120 + 123392446 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I

a score=110205.000000
s hg38.chr6_GL000254v2_alt   939176 14 +   4827813 T-CCAACAGAggctt
s panTro5.chr6             29901933 14 + 175400573 T-CCAACAGAggctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30135582 14 + 173848474 T-CCAACAGAggctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935208 14 +   6154872 T-CCAACAGAggctt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652463 14 + 122973662 T-CCAATAGAggctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135440 14 + 172585720 T-CCAACAGAggccg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29798897 14 - 170955103 T-CCAACAGAggccg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2844469 14 -   2996164 T-CCAACAGAggccg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     593134 14 +    766320 T-CCAACAGAggccg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29050362 15 -  71996105 TCCCAACAGAggccg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     254821 14 +    290775 T-CCAACAGAggccg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688329 14 -   3067355 T-CCAACAGAggccg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      66441 14 +    132061 G-CCAACACAgactg
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            20633 14 -    110772 T-CCAACACAgactg
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     285118 14 -   1771730 T-CCAACACAgactg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     355895 14 -    457564 T-CCAACACAgactg
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57977894 14 -  94987271 -GCCTGCACAAGGTT
i mm10.chr17               C 0 I 26
e micMur3.chr6               198226 120 + 123392446 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e otoGar3.GL873550           165144  0 +  18854210 C

a score=961053.000000
s hg38.chr6_GL000254v2_alt   939190 99 +   4827813 ggcatggtggctcacacctgtaatcccagcactttgggaggccgaggccagcggatcacctgaggttaggagttcgaaaccagcctgaccaacatggtg
s panTro5.chr6             29901947 99 + 175400573 ggcatggtggctcacacctgtaatcccagcactttgggaggccgaggccagcggatcacctgaggttaggagttcgaaaccagcctgaccaacatggtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30135596 99 + 173848474 ggcatggtggctcacacctgtaatcccagcactttgggaggccgaggccagcggatcacctgaggttaggagttcgaaaccagcctgaccaacatggtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935222 99 +   6154872 ggcatggtggctcacacctgtaatcccagcactttgggaggccgaggccagcagatcacctgaggttaggagttcgaaaccagcctgaccaacatggtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652477 91 + 122973662 ggcatggtggctcacacctgtaatcccagcactttgggaggccgagg--------tcacctgaggtcaggagttcgaaaccagcctgaccaacatggtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135454 99 + 172585720 ggcatggtggctgacaattgtaatcccagcactttgggaggctaaggccagcggatcacctgaggtcaggagttcgaaaccagcctgaccaatatcgtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29798911 99 - 170955103 ggcatggtggctgacaattgtaatcccagcactttgggaggctgaggccagcggatcacctgaggtcaggagttcgaaaccagcctgaccaatatcgtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2844483 99 -   2996164 ggcatggtggctgacaattgtaatcccagcactttgggaggctgaggccagcggatcacctgaggtcaggagttcgaaaccagcctgaccaatatcgtg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     593148 99 +    766320 ggcatggtggctcacaactgtaatcccagcactttgggaggctgaggccagcggatcacctgaggtcaggagttcgaaaccagcctgaccaacatggtg
i cerAty1.NW_012002711v1   C 0 I 322
s chlSab2.chr17            29050377 99 -  71996105 ggcatggtggcccacaactgtaatcccagcactttgggaggctgaggccagcggatcacctgaggtcaggagttcgaaaccagcctgaccaacatagtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     254835 99 +    290775 ggcatggtggctcacaactgtaatcccagcactttgggaggctgaggccagcggatcacctgaggtcaggagttcgaaaccagcctgaccaacatggtg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688343 99 -   3067355 ggcatggtggctcacacctgtaatcccagcactttgggaggctgaggccagcggatcacctgaggtcaagagtttgaaaccagcctgaccaacatggtg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      66455 99 +    132061 ggcgcagtggctcacgcatgtaatcccaggactttgggaggctgaggtgggcaaatcacctgtggtcaggagttcgaaaccagcctgactaacatggtg
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            20647 99 -    110772 ggcgcggtggctcatgcatgtaatcccagcactttggggggcagaggtgggccgatcacctgaggtcaggagttcgaaaccagcctgaccaacatggtg
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     285132 99 -   1771730 ggcgcagtggctcatgaatgtaatcccagcactttgggaggctgaggtgggcaaataacctgaggtcaggcgttcgaaaccagcctgaccaatatggtg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     355909 99 -    457564 ggcgcggtggcttatgcatgtaacctcagcactttgggaggctgaggtgggcagatcacctgaggtcaggaattcgaaaccagcctgaccaacatgatg
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e otoGar3.GL873550           165144  0 +  18854210 C

a score=19110.000000
s hg38.chr6_GL000254v2_alt   939289 2 +   4827813 aa
s panTro5.chr6             29902046 2 + 175400573 aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30135695 2 + 173848474 aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935321 2 +   6154872 aa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652568 2 + 122973662 aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135553 2 + 172585720 aa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799010 2 - 170955103 aa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2844582 2 -   2996164 aa
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29050476 2 -  71996105 aa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     254934 2 +    290775 aa
i manLeu1.NW_012099233v1   C 0 I 4308
s colAng1.NW_012115566v1    2688442 2 -   3067355 aa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      66554 2 +    132061 aa
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            20746 2 -    110772 aa
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     285231 2 -   1771730 aa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356008 2 -    457564 aa
i aotNan1.NW_018509740v1   C 0 C 0
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e otoGar3.GL873550           165144 0 +  18854210 C
e cerAty1.NW_012002711v1     593247 322 +    766320 I

a score=255023.000000
s hg38.chr6_GL000254v2_alt   939291 39 +   4827813 accctgtctctactacaaatacaaaaattagctgggcgt
s panTro5.chr6             29902048 39 + 175400573 accctgtctctactacaaatacaaaaattagctgggcgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30135697 39 + 173848474 accctgtctctactacaaatacaaaaattagctgggcgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935323 39 +   6154872 accctgtctctactacaaatacaaaaattagctgggcgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652570 39 + 122973662 accctgtctctactataaatacaaaaattagctgggcgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135555 39 + 172585720 tccctgtctctaccacaaatacaaaaactagttgggtat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799012 39 - 170955103 tccctgtctctaccacaaatacaaaaattagttgggtat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2844584 39 -   2996164 tccctgtctctaccacaaatacaaaaattagttgggtat
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29050478 39 -  71996105 tccctgtctctaccacaaatacaaaaattagttgggcat
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2688444 39 -   3067355 tccctgtctctaccacaaatacaaaaattaggtgggcat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      66556 39 +    132061 accccatatctactaaaaatacaaaaatttcctgggtgt
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            20748 39 -    110772 accccatctctactaaaaatacaaaaatttcctgggtgt
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     285233 39 -   1771730 accccatctctactaaaaatacaaaaatgtcctgggtgt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356010 39 -    457564 accccatctctattaaaaatacaaaaattggccgggcgt
i aotNan1.NW_018509740v1   C 0 I 316
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e otoGar3.GL873550           165144  0 +  18854210 C
e manLeu1.NW_012099233v1     254936 4308 +    290775 I
e cerAty1.NW_012002711v1     593247 322 +    766320 I

a score=535058.000000
s hg38.chr6_GL000254v2_alt   939330 85 +   4827813 catggcatctgcctgtaatctcagctactagggagactgaggcaggacaatcactcgaacccgggaggcggaggttgcagtgagc
s panTro5.chr6             29902087 85 + 175400573 catggcatctgcctgtaatctcagctactagggagactgaggcaggacaatcactcgaacccgggaggcggaggttgcagtgagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30135736 85 + 173848474 catggcatctgcctgtaatctcagctactagggagactgaggcaggacaatcactcgaacccgggaggcggaggttgcagtgagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935362 85 +   6154872 catggcatctgcctgtaatctcagctactagggagactgaggcaggacaatcactcgaacccgggaggcggaggttgcagtgagc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652609 85 + 122973662 catggcatctgcctgtaatctcagctactagggagactgaggcaggacaatcgcttgaacccgggaggcggaggttgcagtgagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135594 85 + 172585720 catggcatctgcctgtaatcccagctactagggagactggcgcaggagaattgcttgaacccaggaggcagaggttgcagtgagc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799051 85 - 170955103 catggcatctgcctgtaatcccagctactagggagactgacgcaggagaattgcttgaacccaggaggcagaggttgcagtgagc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2844623 85 -   2996164 catggcatctgcctgtaatcccagctactagggagactgacgcaggagaattgcttgaacccaggaggcagaggttgcagtgagc
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29050517 85 -  71996105 catggcatctgcctgtaatcccagctactagggagattgacgcaggagaattgcttgaacccaggaggcagaggttgcagtgagc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2688483 82 -   3067355 catggcatctgcctgtaatcccagctactagggagactgacgc---agaattgctcgaacccaggaggcagaggttgcagtgagc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      66595 85 +    132061 catgtcatccgtctgtaatcccaactactagggagactgaggcagtagaatcacttaagcccagcaggcggaggttgcagtgagc
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            20787 85 -    110772 cgtggcatccatctgtaatctcaactactagggagactgaggcagtagaaccacttgaacccagcaggcggaggttgcagtgagc
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     285272 85 -   1771730 catgtcatccgtctgtaatcccaactactagggagactgaggcagtagaatcacttgaacccagccagcagaggttgcagtgagc
i cebCap1.NW_016107755v1   C 0 I 136
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e otoGar3.GL873550           165144  0 +  18854210 C
e aotNan1.NW_018509740v1     356049 316 -    457564 I
e manLeu1.NW_012099233v1     254936 4308 +    290775 I
e cerAty1.NW_012002711v1     593247 322 +    766320 I

a score=306536.000000
s hg38.chr6_GL000254v2_alt   939415 64 +   4827813 caagatggtgccactgcactcctgcctgggcaactagagtgaaactctgtctcaaaaaaaaaaa-
s panTro5.chr6             29902172 63 + 175400573 caagatggtgccactgcactcctgcctgggcaactagagtgaaactctgtctcaaaaaaaaaa--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30135821 63 + 173848474 caagatggtgccactgcactcctgcctgggcaactagagtgaaactctgtctcaaaaaaaaaa--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935447 63 +   6154872 caagatggtgccactgcactcctgcctgggcaactagagtgaaactctgtctcaaaaaaaaaa--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652694 64 + 122973662 cgagatggcgccactgcactcctgcctgggcaactagagcgaaactccgtctcaaaaaaaaaaa-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135679 63 + 172585720 tgagatggcaccattgcactcctgcccgggcaaccagagtgaaactccgtctcaaaaaaaaaa--
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29799136 63 - 170955103 tgagatggcaccattgcactcctgcccgggcaaccagagtgaaactccgtctcaaaaaaaaaa--
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2844708 63 -   2996164 cgagatggcaccattgcactcctgcccgggcaaccagagtgaaactccgtctcaaaaaaaaaa--
i macNem1.NW_012011356v1   C 0 I 1
s chlSab2.chr17            29050602 63 -  71996105 cgagatggcaccattgcactcctgcccgggcaaccagagtgaaactccgtctcaaaaaaaaaa--
i chlSab2.chr17            C 0 I 1
s colAng1.NW_012115566v1    2688565 63 -   3067355 cgagatggcaccattgcactcctgcctgggcaaccagagtgaaactctgtctcaaaaaaaaaa--
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chrUn_GL286223      66680 64 +    132061 tgagatcacaccattgtactccagcatggaaaacaagagtaaaactccatctcaaaaaaaaaa-a
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            20872 64 -    110772 tgagatcatacccttgtactccagcatggaaagcaagagtaaaactccatctcaaaaaaaaaa-a
i saiBol1.JH378388         C 0 C 0
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e otoGar3.GL873550           165144  0 +  18854210 C
e aotNan1.NW_018509740v1     356049 316 -    457564 I
e cebCap1.NW_016107755v1     285357 136 -   1771730 I
e manLeu1.NW_012099233v1     254936 4308 +    290775 I
e cerAty1.NW_012002711v1     593247 322 +    766320 I

a score=2614.000000
s hg38.chr6_GL000254v2_alt   939479 2 +   4827813 aa
s nomLeu3.chr1a            74652758 2 + 122973662 aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135743 1 + 172585720 -a
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29799200 1 - 170955103 -a
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2844772 1 -   2996164 -a
i macNem1.NW_012011356v1   I 1 C 0
s chlSab2.chr17            29050666 1 -  71996105 -a
i chlSab2.chr17            I 1 C 0
s calJac3.chrUn_GL286223      66744 2 +    132061 aa
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            20936 2 -    110772 aa
i saiBol1.JH378388         C 0 C 0
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e otoGar3.GL873550           165144 0 +  18854210 C
e aotNan1.NW_018509740v1     356049 316 -    457564 I
e cebCap1.NW_016107755v1     285357 136 -   1771730 I
e colAng1.NW_012115566v1    2688628 1 -   3067355 I
e manLeu1.NW_012099233v1     254936 4308 +    290775 I
e cerAty1.NW_012002711v1     593247 322 +    766320 I
e gorGor5.CYUI01015250v1    5935510 0 +   6154872 C
e panPan2.chr6             30135884 0 + 173848474 C
e panTro5.chr6             29902235 0 + 175400573 C

a score=4853.000000
s hg38.chr6_GL000254v2_alt   939481 2 +   4827813 ga
s panTro5.chr6             29902235 2 + 175400573 ga
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935510 2 +   6154872 aa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652760 2 + 122973662 aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135744 2 + 172585720 aa
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29799201 2 - 170955103 aa
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2844773 2 -   2996164 aa
i macNem1.NW_012011356v1   C 0 I 1
s chlSab2.chr17            29050667 2 -  71996105 aa
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378388            20938 2 -    110772 aa
i saiBol1.JH378388         C 0 M 766
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e otoGar3.GL873550           165144 0 +  18854210 C
e aotNan1.NW_018509740v1     356049 316 -    457564 I
e cebCap1.NW_016107755v1     285357 136 -   1771730 I
e calJac3.chrUn_GL286223      66746 0 +    132061 C
e colAng1.NW_012115566v1    2688628 1 -   3067355 I
e manLeu1.NW_012099233v1     254936 4308 +    290775 I
e cerAty1.NW_012002711v1     593247 322 +    766320 I
e panPan2.chr6             30135884 0 + 173848474 C

a score=8264.000000
s hg38.chr6_GL000254v2_alt   939483 9 +   4827813 aagaaagaa
s panTro5.chr6             29902237 9 + 175400573 aagaaagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30135884 7 + 173848474 --aaaagaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935512 9 +   6154872 aagaaagaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652762 9 + 122973662 aaaaaaagg
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            29050669 9 -  71996105 aaaaaagaa
i chlSab2.chr17            C 0 C 0
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e saiBol1.JH378388            20940 766 -    110772 M
e otoGar3.GL873550           165144 0 +  18854210 C
e aotNan1.NW_018509740v1     356049 316 -    457564 I
e cebCap1.NW_016107755v1     285357 136 -   1771730 I
e calJac3.chrUn_GL286223      66746 0 +    132061 C
e colAng1.NW_012115566v1    2688628 1 -   3067355 I
e manLeu1.NW_012099233v1     254936 4308 +    290775 I
e cerAty1.NW_012002711v1     593247 322 +    766320 I
e macNem1.NW_012011356v1    2844775 1 -   2996164 I
e macFas5.chr4             29799203 1 - 170955103 I
e rheMac8.chr4             30135746 1 + 172585720 I

a score=18436.000000
s hg38.chr6_GL000254v2_alt   939492 24 +   4827813 a-aagaagaagaagaaggagaagga
s panTro5.chr6             29902246 24 + 175400573 a-aagaagaagaaggaggagaagga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30135891 24 + 173848474 g-aaaaagaagaaggaggagaagga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935521 25 +   6154872 agaaaaagaagaagaaggagaagga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652771 24 + 122973662 a-agaaagaagaaggaggagaagga
i nomLeu3.chr1a            C 0 C 0
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e saiBol1.JH378388            20940 766 -    110772 M
e otoGar3.GL873550           165144  0 +  18854210 C
e aotNan1.NW_018509740v1     356049 316 -    457564 I
e cebCap1.NW_016107755v1     285357 136 -   1771730 I
e calJac3.chrUn_GL286223      66746  0 +    132061 C
e colAng1.NW_012115566v1    2688628  1 -   3067355 I
e manLeu1.NW_012099233v1     254936 4308 +    290775 I
e chlSab2.chr17            29050678  0 -  71996105 C
e cerAty1.NW_012002711v1     593247 322 +    766320 I
e macNem1.NW_012011356v1    2844775  1 -   2996164 I
e macFas5.chr4             29799203  1 - 170955103 I
e rheMac8.chr4             30135746  1 + 172585720 I

a score=8169.000000
s hg38.chr6_GL000254v2_alt   939516 17 +   4827813 gaagaaggagaaggaga
s panTro5.chr6             29902270 17 + 175400573 gaaggagaagaagaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30135915 17 + 173848474 gaagaagaagaagaaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935546 17 +   6154872 gaaggaggagaaggaga
i gorGor5.CYUI01015250v1   C 0 I 177
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e saiBol1.JH378388            20940 766 -    110772 M
e otoGar3.GL873550           165144  0 +  18854210 C
e aotNan1.NW_018509740v1     356049 316 -    457564 I
e cebCap1.NW_016107755v1     285357 136 -   1771730 I
e calJac3.chrUn_GL286223      66746  0 +    132061 C
e colAng1.NW_012115566v1    2688628  1 -   3067355 I
e manLeu1.NW_012099233v1     254936 4308 +    290775 I
e chlSab2.chr17            29050678  0 -  71996105 C
e cerAty1.NW_012002711v1     593247 322 +    766320 I
e macNem1.NW_012011356v1    2844775  1 -   2996164 I
e macFas5.chr4             29799203  1 - 170955103 I
e rheMac8.chr4             30135746  1 + 172585720 I
e nomLeu3.chr1a            74652795  0 + 122973662 C

a score=573.000000
s hg38.chr6_GL000254v2_alt   939533 2 +   4827813 ag
s panTro5.chr6             29902287 2 + 175400573 ag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30135932 2 + 173848474 ag
i panPan2.chr6             C 0 C 0
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e saiBol1.JH378388            20940 766 -    110772 M
e otoGar3.GL873550           165144 0 +  18854210 C
e aotNan1.NW_018509740v1     356049 316 -    457564 I
e cebCap1.NW_016107755v1     285357 136 -   1771730 I
e calJac3.chrUn_GL286223      66746 0 +    132061 C
e colAng1.NW_012115566v1    2688628 1 -   3067355 I
e manLeu1.NW_012099233v1     254936 4308 +    290775 I
e chlSab2.chr17            29050678 0 -  71996105 C
e cerAty1.NW_012002711v1     593247 322 +    766320 I
e macNem1.NW_012011356v1    2844775 1 -   2996164 I
e macFas5.chr4             29799203 1 - 170955103 I
e rheMac8.chr4             30135746 1 + 172585720 I
e nomLeu3.chr1a            74652795 0 + 122973662 C
e gorGor5.CYUI01015250v1    5935563 177 +   6154872 I

a score=28347.000000
s hg38.chr6_GL000254v2_alt   939535 73 +   4827813 a--gaaggagaagaagaagaa--gaaggaa-gaagaagaagaagaa-aagaa-aagaagaagaagacgaagacgaagaag
s panTro5.chr6             29902289 80 + 175400573 aaggaagaagaagaaggagaaaagaagaaaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30135934 75 + 173848474 aa-gaagaaggagaagaagaa--ggagaa--gaagaagaaaaagaagaagaagaagaagaagaagaagaagaagaagaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935740 74 +   6154872 --agaagaagaagaagaagaa--gaagaa--gaagaagaagaagaagaagaagaagaaggagaagaagaagaagaagagg
i gorGor5.CYUI01015250v1   I 177 C 0
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e saiBol1.JH378388            20940 766 -    110772 M
e otoGar3.GL873550           165144  0 +  18854210 C
e aotNan1.NW_018509740v1     356049 316 -    457564 I
e cebCap1.NW_016107755v1     285357 136 -   1771730 I
e calJac3.chrUn_GL286223      66746  0 +    132061 C
e colAng1.NW_012115566v1    2688628  1 -   3067355 I
e manLeu1.NW_012099233v1     254936 4308 +    290775 I
e chlSab2.chr17            29050678  0 -  71996105 C
e cerAty1.NW_012002711v1     593247 322 +    766320 I
e macNem1.NW_012011356v1    2844775  1 -   2996164 I
e macFas5.chr4             29799203  1 - 170955103 I
e rheMac8.chr4             30135746  1 + 172585720 I
e nomLeu3.chr1a            74652795  0 + 122973662 C

a score=5640.000000
s hg38.chr6_GL000254v2_alt   939608 6 +   4827813 aagaag
s panTro5.chr6             29902369 6 + 175400573 aagaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136009 6 + 173848474 aagaag
i panPan2.chr6             C 0 I 177
s gorGor5.CYUI01015250v1    5935814 6 +   6154872 aagaag
i gorGor5.CYUI01015250v1   C 0 C 0
s colAng1.NW_012115566v1    2688629 6 -   3067355 aagaag
i colAng1.NW_012115566v1   I 1 C 0
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e saiBol1.JH378388            20940 766 -    110772 M
e otoGar3.GL873550           165144 0 +  18854210 C
e aotNan1.NW_018509740v1     356049 316 -    457564 I
e cebCap1.NW_016107755v1     285357 136 -   1771730 I
e calJac3.chrUn_GL286223      66746 0 +    132061 C
e manLeu1.NW_012099233v1     254936 4308 +    290775 I
e chlSab2.chr17            29050678 0 -  71996105 C
e cerAty1.NW_012002711v1     593247 322 +    766320 I
e macNem1.NW_012011356v1    2844775 1 -   2996164 I
e macFas5.chr4             29799203 1 - 170955103 I
e rheMac8.chr4             30135746 1 + 172585720 I
e nomLeu3.chr1a            74652795 0 + 122973662 C

a score=2730.000000
s hg38.chr6_GL000254v2_alt   939614 2 +   4827813 aa
s panTro5.chr6             29902375 2 + 175400573 aa
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935820 2 +   6154872 aa
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     593569 2 +    766320 aa
i cerAty1.NW_012002711v1   I 322 C 0
s manLeu1.NW_012099233v1     259244 2 +    290775 aa
i manLeu1.NW_012099233v1   I 4308 C 0
s colAng1.NW_012115566v1    2688635 2 -   3067355 aa
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e dasNov3.JH582591            87028 3996 +    102524 M
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e saiBol1.JH378388            20940 766 -    110772 M
e otoGar3.GL873550           165144 0 +  18854210 C
e aotNan1.NW_018509740v1     356049 316 -    457564 I
e cebCap1.NW_016107755v1     285357 136 -   1771730 I
e calJac3.chrUn_GL286223      66746 0 +    132061 C
e chlSab2.chr17            29050678 0 -  71996105 C
e macNem1.NW_012011356v1    2844775 1 -   2996164 I
e macFas5.chr4             29799203 1 - 170955103 I
e rheMac8.chr4             30135746 1 + 172585720 I
e nomLeu3.chr1a            74652795 0 + 122973662 C
e panPan2.chr6             30136015 177 + 173848474 I

a score=4011.000000
s hg38.chr6_GL000254v2_alt   939616 2 +   4827813 ga
s panTro5.chr6             29902377 2 + 175400573 ga
i panTro5.chr6             C 0 I 36
s gorGor5.CYUI01015250v1    5935822 2 +   6154872 ga
i gorGor5.CYUI01015250v1   C 0 I 1
s cerAty1.NW_012002711v1     593571 2 +    766320 ga
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099233v1     259246 2 +    290775 ga
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688637 2 -   3067355 ga
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH582591            91121 2 +    102524 GA
i dasNov3.JH582591         M 3996 C 0
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e saiBol1.JH378388            20940 766 -    110772 M
e otoGar3.GL873550           165144 0 +  18854210 C
e aotNan1.NW_018509740v1     356049 316 -    457564 I
e cebCap1.NW_016107755v1     285357 136 -   1771730 I
e calJac3.chrUn_GL286223      66746 0 +    132061 C
e chlSab2.chr17            29050678 0 -  71996105 C
e macNem1.NW_012011356v1    2844775 1 -   2996164 I
e macFas5.chr4             29799203 1 - 170955103 I
e rheMac8.chr4             30135746 1 + 172585720 I
e nomLeu3.chr1a            74652795 0 + 122973662 C
e panPan2.chr6             30136015 177 + 173848474 I

a score=-2719.000000
s hg38.chr6_GL000254v2_alt   939618 1 +   4827813 -g
s panTro5.chr6             29902415 1 + 175400573 -g
i panTro5.chr6             I 36 C 0
s panPan2.chr6             30136192 1 + 173848474 -g
i panPan2.chr6             I 177 C 0
s gorGor5.CYUI01015250v1    5935825 1 +   6154872 -g
i gorGor5.CYUI01015250v1   I 1 C 0
s cerAty1.NW_012002711v1     593573 1 +    766320 -a
i cerAty1.NW_012002711v1   C 0 C 0
s manLeu1.NW_012099233v1     259248 1 +    290775 -a
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688639 1 -   3067355 -a
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH582591            91123 1 +    102524 T-
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e saiBol1.JH378388            20940 766 -    110772 M
e otoGar3.GL873550           165144 0 +  18854210 C
e aotNan1.NW_018509740v1     356049 316 -    457564 I
e cebCap1.NW_016107755v1     285357 136 -   1771730 I
e calJac3.chrUn_GL286223      66746 0 +    132061 C
e chlSab2.chr17            29050678 0 -  71996105 C
e macNem1.NW_012011356v1    2844775 1 -   2996164 I
e macFas5.chr4             29799203 1 - 170955103 I
e rheMac8.chr4             30135746 1 + 172585720 I
e nomLeu3.chr1a            74652795 0 + 122973662 C

a score=3321.000000
s hg38.chr6_GL000254v2_alt   939619 1 +   4827813 g
s panTro5.chr6             29902416 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136193 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935826 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652795 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002711v1     593574 1 +    766320 g
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29050678 1 -  71996105 g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259249 1 +    290775 g
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688640 1 -   3067355 g
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH582591            91124 1 +    102524 G
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e saiBol1.JH378388            20940 766 -    110772 M
e otoGar3.GL873550           165144 0 +  18854210 C
e aotNan1.NW_018509740v1     356049 316 -    457564 I
e cebCap1.NW_016107755v1     285357 136 -   1771730 I
e calJac3.chrUn_GL286223      66746 0 +    132061 C
e macNem1.NW_012011356v1    2844775 1 -   2996164 I
e macFas5.chr4             29799203 1 - 170955103 I
e rheMac8.chr4             30135746 1 + 172585720 I

a score=54658.000000
s hg38.chr6_GL000254v2_alt   939620 9 +   4827813 aagaagaag
s panTro5.chr6             29902417 9 + 175400573 aagaagaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136194 9 + 173848474 aagaagaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935827 9 +   6154872 aggagaaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652796 9 + 122973662 aagaagaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135747 9 + 172585720 aagaagaag
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29799204 9 - 170955103 aagaagaag
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2844776 9 -   2996164 aagaagaag
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1     593575 9 +    766320 aagaagaag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29050679 9 -  71996105 aagaaGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259250 9 +    290775 aagaagaag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688641 9 -   3067355 aagaaGAAG
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH582591            91125 9 +    102524 AACAACAAA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e saiBol1.JH378388            20940 766 -    110772 M
e otoGar3.GL873550           165144 0 +  18854210 C
e aotNan1.NW_018509740v1     356049 316 -    457564 I
e cebCap1.NW_016107755v1     285357 136 -   1771730 I
e calJac3.chrUn_GL286223      66746 0 +    132061 C

a score=32240.000000
s hg38.chr6_GL000254v2_alt   939629 4 +   4827813 aaCT
s panTro5.chr6             29902426 4 + 175400573 aaCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136203 4 + 173848474 aaCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935836 4 +   6154872 aaCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652805 4 + 122973662 aaCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135756 4 + 172585720 aaCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799213 4 - 170955103 aaCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2844785 4 -   2996164 aaCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     593584 4 +    766320 aaCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29050688 4 -  71996105 AACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259259 4 +    290775 aaCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688650 4 -   3067355 AACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      66746 4 +    132061 aaCT
i calJac3.chrUn_GL286223   C 0 C 0
s dasNov3.JH582591            91134 4 +    102524 AATT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e saiBol1.JH378388            20940 766 -    110772 M
e otoGar3.GL873550           165144 0 +  18854210 C
e aotNan1.NW_018509740v1     356049 316 -    457564 I
e cebCap1.NW_016107755v1     285357 136 -   1771730 I

a score=181411.000000
s hg38.chr6_GL000254v2_alt   939633 27 +   4827813 ---CCAACAC-AGCA-CTCCAT-TCAGCCTAAC
s panTro5.chr6             29902430 27 + 175400573 ---CCAACAC-AGCA-CTCCAT-TCAGCCTAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136207 27 + 173848474 ---CCAACAC-AGCA-CTCCAT-TCAGCCTAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935840 27 +   6154872 ---CCAACAC-AGCG-CTCCAT-TCAGCCCAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652809 27 + 122973662 ---CCAACAC-AGCT-CTCCAT-TCAGCCCAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135760 27 + 172585720 ---ACAACAC-AGCT-CTCCAT-TCAGCCCAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799217 27 - 170955103 ---ACAACAC-AGCT-CTCCAT-TCAGCCCAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2844789 27 -   2996164 ---ACAACAC-AGCT-CTCCAT-TCAGCCCAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     593588 27 +    766320 ---ACAACAC-AGCT-CTCCAT-TCAGCCCAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29050692 27 -  71996105 ---ACAACAC-AGCT-CTCCAT-TCAGCCCAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259263 27 +    290775 ---ACAACAC-AGCT-CTCCAT-TCAGCCCAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688654 27 -   3067355 ---ACAACAC-AGCT-CTCCAT-TCAGCCCAAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      66750 28 +    132061 ---CCAACAC-GGTTCCTCCAT-TCAGCCTAAG
i calJac3.chrUn_GL286223   C 0 I 4
s otoGar3.GL873550           165144 28 +  18854210 ---CCAACACGAGCT-CTCCAT-CCAGCCCAAA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            91138 26 +    102524 CACCTAACGC-AAGC-CTCCGTGTGAGC-----
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e saiBol1.JH378388            20940 766 -    110772 M
e aotNan1.NW_018509740v1     356049 316 -    457564 I
e cebCap1.NW_016107755v1     285357 136 -   1771730 I

a score=92797.000000
s hg38.chr6_GL000254v2_alt   939660 10 +   4827813 ACACTTCTTG-
s panTro5.chr6             29902457 10 + 175400573 ACACTTCTTG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136234 10 + 173848474 ACACTTCTTG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935867 10 +   6154872 ACACTTCTTG-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652836 10 + 122973662 ACACTTCTTG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135787 10 + 172585720 ACACTTCTTG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799244 10 - 170955103 ACACTTCTTG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2844816 10 -   2996164 ACACTTCTTG-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     593615 10 +    766320 ACACTTCTTG-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29050719 10 -  71996105 ACACTTCTTG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259290 10 +    290775 ACACTTCTTG-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688681 10 -   3067355 ACACTTCTTG-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      66782 10 +    132061 ACACTTCTTG-
i calJac3.chrUn_GL286223   I 4 C 0
s cebCap1.NW_016107755v1     285493 10 -   1771730 ACACTTCTTG-
i cebCap1.NW_016107755v1   I 136 C 0
s aotNan1.NW_018509740v1     356365 10 -    457564 ACACTTCTTG-
i aotNan1.NW_018509740v1   I 316 C 0
s otoGar3.GL873550           165172  9 +  18854210 CCACTTCCC--
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            91164 10 +    102524 -TCCTTCCCTC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e proCoq1.NW_012152574v1     658939 119 +    730504 I
e canFam3.chr35            26268761 323 +  26524999 I
e saiBol1.JH378388            20940 766 -    110772 M

a score=7279.000000
s hg38.chr6_GL000254v2_alt   939670 1 +   4827813 T
s panTro5.chr6             29902467 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136244 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935877 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652846 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135797 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799254 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2844826 1 -   2996164 T
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     593625 1 +    766320 T
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29050729 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259300 1 +    290775 T
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688691 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      66792 1 +    132061 C
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     285503 1 -   1771730 C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356375 1 -    457564 C
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     659058 1 +    730504 T
i proCoq1.NW_012152574v1   I 119 C 0
s dasNov3.JH582591            91174 1 +    102524 T
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198226 120 + 123392446 I
e mm10.chr17               57977908 26 -  94987271 I
e canFam3.chr35            26268761 323 +  26524999 I
e saiBol1.JH378388            20940 766 -    110772 M
e otoGar3.GL873550           165181 0 +  18854210 C

a score=160855.000000
s hg38.chr6_GL000254v2_alt   939671 12 +   4827813 CTCTGCCCTTGC
s panTro5.chr6             29902468 12 + 175400573 CTCTGCCCTTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136245 12 + 173848474 CTCTGCCCTTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935878 12 +   6154872 CTCTGCCCTTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652847 12 + 122973662 CTCTGCCCTTGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135798 12 + 172585720 CTCTGCCCTTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799255 12 - 170955103 CTCTGCCCTTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2844827 12 -   2996164 CTCTGCCCTTGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     593626 12 +    766320 CTCTGCCCTTGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29050730 12 -  71996105 CTCTGCCCTTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259301 12 +    290775 CTCTGCCCTTGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688692 12 -   3067355 CTCTGCCCTAGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      66793 12 +    132061 CTCTACCCTTGC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     285504 12 -   1771730 CTCTGCCCTTGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356376 12 -    457564 CTCTGCCCTTGC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               198346 12 + 123392446 CTCTGTCCCTGC
i micMur3.chr6             I 120 C 0
s proCoq1.NW_012152574v1     659059 12 +    730504 CTCTGTCCCTGC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           165181 12 +  18854210 CTCTGTCCCTGC
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            91175  9 +    102524 TCCTGCCCC---
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57977908 26 -  94987271 I
e canFam3.chr35            26268761 323 +  26524999 I
e saiBol1.JH378388            20940 766 -    110772 M

a score=627604.000000
s hg38.chr6_GL000254v2_alt   939683 45 +   4827813 TCTCCCACCC-----AACACATTCATCCTTACCCTTGGGCCTCATAGGCT
s panTro5.chr6             29902480 45 + 175400573 TCTCCCACCC-----AGCACATTCATCCTTACCCTTGGGCCTCATAGGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136257 45 + 173848474 TCTCCCACCC-----AGCACATTCATCCTTACCCTTGGGCCTCATAGGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935890 45 +   6154872 TCTCCCACCC-----AGCACATTCATCCTTACCCTTGGGCCTCATAGGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652859 45 + 122973662 TCTCCCACCC-----AACACATTCATCCTCACCCTTGGGTCTCATAGGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135810 45 + 172585720 TCTCCCACCC-----AACACATTCATCCTCGCCCTTGGGCCTTATAGGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799267 45 - 170955103 TCTCCCACCC-----AACACATTCATCCTCGCCCTTGGGCCTTATAGGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2844839 45 -   2996164 TCTCCCACCC-----AACACATTCATCCTCGCCCTTGGGCCTTATAGGCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     593638 45 +    766320 TCTCCCACCC-----AACACATTCATCCTCGCCCTTGGGTCTTATAGGCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29050742 45 -  71996105 TCTCCCACCC-----AACACATTCATCCTCGGCCTTGGGCCTTATAGGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259313 45 +    290775 TCTCCCACCC-----AACACATTCATCCTCGCCCTTGGGTCTTATAGGCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688704 45 -   3067355 TCTCCCACCC-----AACACATTCATCCTCACCCTTGGGCCTTATAGGCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      66805 45 +    132061 TCTCCCACCC-----AACATATTCATCCTCACCCTTGGGCCTCATAGGCT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     285516 45 -   1771730 TCTCCCACCC-----AACATATTCATCCAAACCCTTGGGGCTCATAGGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356388 45 -    457564 CCTCCCACCC-----AACATATTCATCCTCGCCCTTGAGCCTCATAGGCT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               198358 45 + 123392446 TTTCCCACCC-----AGCACAGCCATCCTCACCCCTGGGCCTCAAAGACT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     659071 45 +    730504 TTTCCCACCC-----AACACAGTCATCCTCACCCTTGGGCCTCAAAGACC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           165193 45 +  18854210 TTTCCCACCC-----AACACATGCATCCTCACCTTTGGACCTCATAAACT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57977934 48 -  94987271 TTTCCCAACCTTTAAAATGCAGCCAT--TCACCCTTGGGCTTCATAGGCT
i mm10.chr17               I 26 C 0
s dasNov3.JH582591            91184 45 +    102524 TCTCTCATCC-----CACACATCCCCCCTCGCCCCTACACCACATAGGCT
i dasNov3.JH582591         C 0 C 0
e canFam3.chr35            26268761 323 +  26524999 I
e saiBol1.JH378388            20940 766 -    110772 M

a score=447268.000000
s hg38.chr6_GL000254v2_alt   939728 56 +   4827813 AGAAAT--AAGAAG--------AAAAAAAGAAAA-AATTGGCTTTTCAA-----------------------------ATTAGAAGCAAATAAAAA
s panTro5.chr6             29902525 56 + 175400573 AGAAAT--AAGAAG--------AAAAAAAGAAAA-AATTGGCTTTTCAA-----------------------------ATTAGAAGCAAATAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136302 56 + 173848474 AGAAAT--AAGAAG--------AAAAAAAGAAAA-AATTGGCTTTTCAA-----------------------------ATTAGAAGCAAATAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935935 56 +   6154872 AGAAAT--AAGAAG--------AAAAAAAGAAAA-AATTGGCTTTTCAA-----------------------------ATTAGAAGCAAATAAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652904 56 + 122973662 AGAAAT--AAGAAG--------AAAAAAAGAAAA-ATTTGGCGTTTCAA-----------------------------ATTAAAAGCAAATAAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135855 50 + 172585720 AGAAAT--AAG--------------AAAAAATAA-ATTTGGCATTTCAA-----------------------------ATTAAAAGCAAATAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799312 50 - 170955103 AGAAAT--AAG--------------AAAAAATAA-ATTTGGCATTTCAA-----------------------------ATTAAAAGCAAATAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2844884 50 -   2996164 AGAAAT--AAG--------------AAAAAATAA-ATTTGGCATTTCAA-----------------------------ATTAAAAGCAAATAAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     593683 50 +    766320 AGAAAT--AAG--------------AAAAAATAA-ATTTGGCGTTTCAA-----------------------------ATTAAAAGCAAATAAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29050787 50 -  71996105 AGAAAT--AAG--------------AAAAAATAA-ATTTGGTGTTTCAA-----------------------------ATTAAAAGCAAATAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259358 50 +    290775 AGAAAT--AAG--------------AAAAAATAA-ATTTGGCGTTTCAA-----------------------------ATTAAAAGCAAATAAAAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688749 50 -   3067355 AGAAAT--AAG--------------AAAAAATAA-ATTTGGCATTTCAA-----------------------------ATTAAAAGCAAATAAAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      66850 45 +    132061 AGAAAT--AAG--------------AAAAAAA------TGGCTTTTCAA-----------------------------ATTAAAAGCAAATAAAAA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     285561 45 -   1771730 AGAAAT--AAA--------------AAAAAAA------TGGCTTTTCAA-----------------------------ATTAAAAGCAAATAAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356433 47 -    457564 AGAAATCGGAA--------------AAAAAAA------AGGCTTTTCAA-----------------------------ATTAAAAGCAAATAAAAA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               198403 47 + 123392446 AGAAAT--AAG--------------GAAAAAG----TTTGGCTTTTCAA-----------------------------ATTAAAAGCAAATAAAAA
i micMur3.chr6             C 0 I 17
s proCoq1.NW_012152574v1     659116 47 +    730504 AGAAAT--AAG--------------GAAAAAG----TTTGGCTTTTCAA-----------------------------ATTAAAAGCAAATAAAAA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           165238 45 +  18854210 AGAA----AAG--------------AAAAAAG----ATTGGCTTTTCAA-----------------------------ATTACAAGCAAATAAAAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57977982 80 -  94987271 AGAAAT--AGG--------------AAAATGTAATAATTGctgctgctgctgctactactactactactactactactactactgactaGTAAAAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26269084 55 +  26524999 agaaat--aaataaaatcttttaaaaaaatacaa-aat---------aa-----------------------------aataaaaGTGAATAAAAA
i canFam3.chr35            I 323 I 1
s dasNov3.JH582591            91229 46 +    102524 AGAGAG--AAG--------------AATAAAC---TCGTGGTTTTTCAG-----------------------------ATTAAAAGACAGAACA--
i dasNov3.JH582591         C 0 C 0
e saiBol1.JH378388            20940 766 -    110772 M

a score=338653.000000
s hg38.chr6_GL000254v2_alt   939784 35 +   4827813 GTTAACTGG--AATCTTT--CAACACTGTCAGA-AATGTA
s panTro5.chr6             29902581 35 + 175400573 TTTAACTGG--AATCTTT--CAACACTGTCAGA-AATGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136358 35 + 173848474 TTTAACTGG--AATCTTT--CAACACTGTCAGA-AATGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5935991 35 +   6154872 TTTAACTGG--AATCTTT--CAACACTGTCAGA-AATGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652960 34 + 122973662 TTTTACTGG--AGTCTTT--CAACACCGTCAGA-AAT-TA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135905 35 + 172585720 TTTAACTGG--AGTCTTT--CAACACTGTCAGA-AATGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799362 35 - 170955103 TTTAACTGG--AGTCTTT--CAACACTGTCAGA-AATGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2844934 35 -   2996164 TTTAACTGG--AGTCTTT--CAATACTGTCAGA-AATGTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     593733 35 +    766320 TTTAACTGG--AGTCTTT--CAACACTGTCAGA-AATGTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29050837 35 -  71996105 TTTAACTGG--AGTCTTT--CAACACTGTCAGA-AATGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259408 35 +    290775 TTTAACTGG--AGTCTTT--CAACACTGTCAGA-AATGTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688799 34 -   3067355 TTTAACTGG--AGTC-TT--CAACACTGTCAGA-AATGTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      66895 37 +    132061 TTTGACTGGAAAATCTTT--CAACAGTATCAGA-GATGTA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     285606 37 -   1771730 TTTAACTGGAAAATCTTT--CAACAGTGTCAGA-AATGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356480 33 -    457564 TTTAACTGGAAAA----T--CAACAGTGTCAGA-AATGTG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     659163 28 +    730504 TTTAACTGG--AAT---------CAGCATCAGA-GATCTG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           165283 35 +  18854210 TTTAACTGG--AATCCTT--CAACAGTGTCAGA-GGTCTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57978062 34 -  94987271 TTTCATAGG--CATCTTC--TATAATTG-CAAA-TATCTA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26269140 35 +  26524999 TTAAACTGG--AATCTTT--CAACAAGATCAGA-GAAGAG
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            91275 38 +    102524 CCTTACGGG--AATCTTTGGCAGGAAGGCCACAGGATGGA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198450 17 + 123392446 I
e saiBol1.JH378388            20940 766 -    110772 M

a score=167019.000000
s hg38.chr6_GL000254v2_alt   939819 12 +   4827813 AAT-TTTAACTTA
s panTro5.chr6             29902616 12 + 175400573 AAT-TTTAACTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136393 12 + 173848474 AAT-TTTAACTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936026 11 +   6154872 AAT-TTTAACTT-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74652994 12 + 122973662 AAT-TTTAACTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135940 12 + 172585720 AAT-TTTAACTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799397 12 - 170955103 AAT-TTTAACTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2844969 12 -   2996164 AAT-TTTAACTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     593768 12 +    766320 AAT-TTTAACTTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29050872 12 -  71996105 AAT-TTTAACTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259443 12 +    290775 AAT-TTTAACTTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688833 12 -   3067355 AAT-TTTAACTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      66932 12 +    132061 AAT-TTTAACTGA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     285643 12 -   1771730 AAT-TTTAACTTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356513 12 -    457564 AAT-TTTAATTGA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               198467 12 + 123392446 AAT-TTTAACTTA
i micMur3.chr6             I 17 C 0
s proCoq1.NW_012152574v1     659191 12 +    730504 AAT-TTTAACTTA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           165318 12 +  18854210 AAT-TTTAACTTA
i otoGar3.GL873550         C 0 I 571
s mm10.chr17               57978096 13 -  94987271 AATACCCAACTTA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26269175 12 +  26524999 AAC-TTTAGCCTA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            91313 11 +    102524 CAC-TTTAGCCT-
i dasNov3.JH582591         C 0 C 0
e saiBol1.JH378388            20940 766 -    110772 M

a score=651736.000000
s hg38.chr6_GL000254v2_alt   939831 48 +   4827813 CAACAACACTTCTTGAAATCTATCTTATCTCATTCTCAATATTGCTCA
s panTro5.chr6             29902628 48 + 175400573 CAACAACACTTCTTGAAATCTATCTTATCTCATTCTCAATATTGCTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136405 48 + 173848474 CAACAACACTTCTTGAAATCTATCTTATCTCATTCTCAATATTGCTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936037 46 +   6154872 --ACAACACTTCTTGAAATCTATCTTATCTCATTCTCAATATTGCTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653006 48 + 122973662 CAATAACACTTCGTGAAATCTATCTTATCTCATTCTAAATATTGCTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30135952 48 + 172585720 CAACAACACTTCTTGAAATCTATCTTATCTCATTCTCATTATTGCTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799409 48 - 170955103 CAACAACACTTCTTGAAATCTATCTTATCTCATTCTCATTATTGCTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2844981 48 -   2996164 CAACAACACTTCTTGAAATCTATCTTATCTCATTCTCATTATTGCTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     593780 48 +    766320 CAACAACACTTCTTGAAATCTATCTTATCTCATTCTCATTATTGCTCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29050884 48 -  71996105 CAACAACACTTCTTGAAATCTATCTTATCTCATTCTCATTATTGCTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259455 48 +    290775 CAACAACACTTCTTGAAATCTATCTTATCTCATTCTCATTATTGCTCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688845 48 -   3067355 CAACAACATTTCTTGAAATCTATCTCATCTCATTCTCATTATTGCTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      66944 48 +    132061 CAACAACACTTCTTGAAATCTATCTTATCTCATCTTCAATATTGCTCA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     285655 48 -   1771730 CAACAACACTTCTTGAAATCTATCTTATCTCATCTTCAATATTGCTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356525 48 -    457564 CAACAACACTTCTTGAAATCTATCTTATCTCATCTTCAATATTGCTCA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               198479 48 + 123392446 TAACCACATTTCTTGAAATCCATTTTCTCTCATTGTCAATATTGCTCA
i micMur3.chr6             C 0 I 94
s proCoq1.NW_012152574v1     659203 48 +    730504 CAACCACATTTCTTGAAATCCATTTCCTCTCATCGTCAATATTGCTCA
i proCoq1.NW_012152574v1   C 0 I 94
s otoGar3.GL873550           165901 48 +  18854210 cAACCACATTTCTTGATACCAATTTCTTCTCATTCTCAATATTGTTCA
i otoGar3.GL873550         I 571 C 0
s mm10.chr17               57978109 39 -  94987271 ------CATCT-TTGAAATCCATCT--TCCCACTCTCACTACGACTCA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26269187 46 +  26524999 TACCCACATTTCTTGAAATCCATATCTTCTCACTTCCAATATT--TCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            91324 38 +    102524 ----AACCCTCCCTGAAGTCCACTTGCCCTCA--CTCAGCGTTG----
i dasNov3.JH582591         C 0 C 0
e saiBol1.JH378388            20940 766 -    110772 M

a score=257651.000000
s hg38.chr6_GL000254v2_alt   939879 25 +   4827813 AACTCCCATAGACAATCCACAGACA
s panTro5.chr6             29902676 25 + 175400573 AACTCCCATAGACAATCCACAGACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136453 25 + 173848474 AACTCCCATAGACAATCCACAGACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936083 25 +   6154872 AACTCCCATAGACAATCCACAGACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653054 25 + 122973662 AACTCCCATAGACACTCCACAGACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136000 25 + 172585720 AATTCCCATAGACACTCCACAGACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799457 25 - 170955103 AATTCCCATAGACACTCCACAGACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845029 25 -   2996164 AATTCCCATAGACACTCCACAGACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     593828 25 +    766320 AATTCCCATAGACACTCCACAGACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29050932 25 -  71996105 AATTCCCATAGAGACTCCACAGACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259503 25 +    290775 AATTCCCATAGACACTCCACAGACA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2688893 25 -   3067355 AATTCCCATAGACATTCCACAGACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      66992 25 +    132061 AACTCCCATAGACACTCCATAGACA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     285703 25 -   1771730 AACTCCCGTAGACACTCCATAGATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356573 25 -    457564 AACTCTCATAGACACTCCATAGACA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           165949 25 +  18854210 CACTACCACAGATATCCCACAGATG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57978148 24 -  94987271 GTCTCCCAGATA-ACCCCACAGATA
i mm10.chr17               C 0 I 694
s canFam3.chr35            26269233 24 +  26524999 CGCTCACACAGACAGCCC-CAGGTG
i canFam3.chr35            C 0 I 1
s dasNov3.JH582591            91362 20 +    102524 -----GCGCAGACGCCTCACCAACG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198527 94 + 123392446 I
e proCoq1.NW_012152574v1     659251 94 +    730504 I
e saiBol1.JH378388            20940 766 -    110772 M

a score=11662.000000
s hg38.chr6_GL000254v2_alt   939904 1 +   4827813 C
s panTro5.chr6             29902701 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136478 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936108 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653079 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136025 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799482 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845054 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     593853 1 +    766320 C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29050957 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259528 1 +    290775 C
i manLeu1.NW_012099233v1   C 0 T 9570
s colAng1.NW_012115566v1    2688918 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67017 1 +    132061 C
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     285728 1 -   1771730 C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356598 1 -    457564 C
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           165974 1 +  18854210 A
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26269258 1 +  26524999 C
i canFam3.chr35            I 1 C 0
s dasNov3.JH582591            91382 1 +    102524 C
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198527 94 + 123392446 I
e mm10.chr17               57978172 694 -  94987271 I
e proCoq1.NW_012152574v1     659251 94 +    730504 I
e saiBol1.JH378388            20940 766 -    110772 M

a score=585316.000000
s hg38.chr6_GL000254v2_alt   939905  78 +   4827813 CCACATA--ataatgcatcatgaac--actgggccacttgagggtgaaaagaggtgttattaataatcaagctg----------------------------------------------ggatgaga
s panTro5.chr6             29902702  78 + 175400573 CCACATA--ataatgcatcatgaac--actgggccacttgagggtgaaaagaggtgttattaataatcaagctg----------------------------------------------ggatgaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136479  78 + 173848474 CCACATA--ataatgcatcatgaac--actgggccacttgagggtgaaaagaggtgttattaataatcaagctg----------------------------------------------ggatgaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936109  78 +   6154872 CCACATA--ataatgcatcatgaac--actgggccacttgagggtgaaaagaggtgttattaataatcaagctg----------------------------------------------ggatgaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653080  78 + 122973662 CCACATA--ataatgcatcatgaac--attgggccacttgagggtgaaaagaggtgttattaataatcaagctg----------------------------------------------ggatgaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136026  78 + 172585720 CCGCATA--ataacgcatcatgaac--attgggccacttgcaggtgacaagaggtattattaataatcaagcta----------------------------------------------ggatgaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799483  78 - 170955103 CCGCATA--ataatgcatcatgaac--attgggccacttgcaggtgacaagaggtgttattaataatcaagcta----------------------------------------------ggatgaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845055  78 -   2996164 CCGCATA--ataatgcatcatgaac--attgggccacttgcaggtgacaagaggtgttattaataatcaagcta----------------------------------------------ggatgaga
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     593854  78 +    766320 CCGCATA--ataatgcatcatgaac--attgggccacttgcaggtgaaaagaggtgttattaataatcaagcta----------------------------------------------ggatgaga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29050958  78 -  71996105 CCGCATA--ataatgcatcatgaac--agtgggccacttgtaggtgaaaagaggtgttattaataatcaagcta----------------------------------------------ggatgaga
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2688919  78 -   3067355 CCGCATA--ataatgcatcatgaac--attgggccacttgcaggtgaaaagaggtgttattaataatcaagcta----------------------------------------------ggatgaga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67018  77 +    132061 CCACACA--ataatacatcatgaac--actgggccacttgaaggt-aaaagaggtctcattaataatcaagctg----------------------------------------------ggatgaga
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     285729  75 -   1771730 CCAcat---ataatacatcatgaac--actgggccacttgaaggt-aaaagaggtctcattaataatcaagctg----------------------------------------------ggacgag-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356599  78 -    457564 CCACATA--ataatacatcatgaac--actgggccacttgaaggtaaaaagaggtctcattaacaatcaagctg----------------------------------------------ggatgaca
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           165975 121 +  18854210 CCACATA--ATA---TATCCTGTAC--ATTGGAATATATGAAAATGAAAAGATGTGTCATTAATAATTAAGCTGAAggccaggtgtggtggctcacacctataatcctagcactctggaaggctgaaa
i otoGar3.GL873550         C 0 I 30
s canFam3.chr35            26269259  69 +  26524999 ---------CTCATGTGTCATACAA--ATGGGGACACCTCA--GTGAAGGGCGGTGCCATTCATAATCTGGCTG----------------------------------------------GACTGGGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            91383  49 +    102524 CCACGGGCTACACGGCCTCCCGCCCCGATCGGGCCCCT------------GAGTTGGCAGT-------------------------------------------------------------------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198527  94 + 123392446 I
e mm10.chr17               57978172 694 -  94987271 I
e proCoq1.NW_012152574v1     659251  94 +    730504 I
e saiBol1.JH378388            20940 766 -    110772 M
e manLeu1.NW_012099233v1     259529 9570 +    290775 T

a score=622914.000000
s hg38.chr6_GL000254v2_alt   939983  75 +   4827813 agtataaaccaggac---------tgtcctggaaaaccAAAAA----------------GTGTA-TCAGCCTGGCT-----------T--GATATCTCTCTCAACTATTTACTA
s panTro5.chr6             29902780  76 + 175400573 agtataaaccaggac---------tgtcctggaaaaccaaaaa----------------gtgtagtcagcctGGCT-----------T--GATATCTCTCTCAACTATTTACTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136557  76 + 173848474 agtataaaccaggac---------tgtcctggaaaaccaaaaa----------------gtgtagtcagcctGGCT-----------T--GATATCTCTCTCAACTATTTACTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936187  76 +   6154872 agtataaaccaggac---------tgtcctggaaaaccaaaaa----------------gtgtagtcagcctGGCT-----------T--GATATCTCTCTCAACTATTTACTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653158  76 + 122973662 agtataaaccagggc---------tgtcttggaaaaccaaaaa----------------gtgtagtcagcctGGCT-----------T--GATATCTCTCTCAACTATTTACTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136104  76 + 172585720 agtataaaccagtac---------catcctggcaaaccaagaa----------------gtgtagtcagcctaGCT-----------T--GATATCTCTCTCAACTATTTACTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799561  76 - 170955103 agtataaaccagtac---------catcctggcaaaccaagaa----------------gtgtagtcagcctaGCT-----------T--GATATCTCTCTCAACTATTTACTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845133  76 -   2996164 agtataaaccagtac---------catcctggcaaaccaagaa----------------gtgtagtcagcctaGCT-----------T--GATATCTCTCTCAACTATTTACTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     593932  76 +    766320 agcataaaccagtac---------catcctggcaaaccaagaa----------------gtgtagtcagcctaGCT-----------T--GGTATCTCTCTCAACTATTTACTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051036  76 -  71996105 agcataaaccagtac---------catcctggcaaaccaagaa----------------gtgtagtcagcctaGCT-----------T--GATATCTCTCTCAACTATTTACTA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2688997  76 -   3067355 agcataaaccagtac---------catcctggcaaaccaagaa----------------gtgtagtcagcctGGCT-----------T--GATATCTCTCTCAACTATTTACTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67095  74 +    132061 -gtataaaccagga----------tgtcctggcaaaccaggaa----------------gtgtggtcagcctGGCT-----------T--GATATCTCTCTCAACTATTTACTC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            21708  75 -    110772 Agtataaaccagga----------tgtcctggcaaaccaggaa----------------gtgtggtcagcctGGCT-----------T--GATATCTCTCTAAACTATTTACTC
i saiBol1.JH378388         M 766 C 0
s cebCap1.NW_016107755v1     285804  75 -   1771730 agtataaaccagga----------tgccctggcaaaccaggaa----------------gtgtggtcagcctGGCT-----------T--GATGTCTCTCTAAACTATTTACTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356677  74 -    457564 -gtataaaccagga----------tgtcctggccaaccaggaa----------------gtgtggtcagcctGGCT-----------T--GATAGCTCTCTAAACTATTTACTC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           166126 109 +  18854210 agcctgagcaagagcaagaccccatctctacaaaaagtagaaaaattagatgggcacacgtgtagt---cccagctacacaggatggt--gaCATGTCTCTCAATTCCTTACTC
i otoGar3.GL873550         I 30 C 0
s canFam3.chr35            26269328  56 +  26524999 AGTACAACCTAGGGC--------------------------------------------AGGTGCTCAGCGCAGCC-----------T--GATAGCCCTCCC-CTTCTGTTCTG
i canFam3.chr35            C 0 I 2
s dasNov3.JH582591            91432  65 +    102524 -GCTTCAGCCAGGGC---------TGTCCTGCCAAGCCCCGAG----------------ACCT------CTCGGCT-----------CCGGGCTCCACCCTCAAGTGT------
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198527  94 + 123392446 I
e mm10.chr17               57978172 694 -  94987271 I
e proCoq1.NW_012152574v1     659251  94 +    730504 I
e manLeu1.NW_012099233v1     259529 9570 +    290775 T

a score=794893.000000
s hg38.chr6_GL000254v2_alt   940058 65 +   4827813 CCAGGGACAAGCCTCCCTTACTCCAACCCAGCATGAAACCTATCTCCTTTGCTTCTCTTTTCTCT
s panTro5.chr6             29902856 65 + 175400573 CCAGGGACAAGCCTCCCTTACTCCAACCCAGCATGAAACCTATCTCCTTTGCTTCTCTTTTCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136633 65 + 173848474 CCAGGGACAAGCCTCCCTTACTCCAACCCAGCATGAAACCTATCTCCTTTGCTTCTCTTTTCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936263 65 +   6154872 CCAGGGACAAGCCTCCCTTACTCCAACCCAGCATGAAACCTATCTCCTTTGCTTCTCTTTTCTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653234 65 + 122973662 CCAGGGACAAGCCTCCCTTACTCCAACCCAGCATGAAGCCTATCTCCTTTGCTTCTCTTTTCTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136180 65 + 172585720 CCAGGGGCAAGCCTCTCTTACTCCAACGCAGCATGAAGCCTATCTCCTTTGCTTCTCTTTTCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799637 65 - 170955103 CCAGGGGCAAGCCTCTCTTACTCCAACGCAGCATGAAGCCTATCTCCTTTGCTTCTCTTTTCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845209 65 -   2996164 CCAGGGGCAAGCCTCTCTTACTCCAACGCAGCATGAAGCCTATCTCCTTTGCTTCTCTTTTCTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594008 64 +    766320 CCA-GGGTAAGCCTCCCTTACTCCAACGCAGCATGAAGCCGATCTCCTTTGCTTCTCTTTTCTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051112 65 -  71996105 CCAGGGGCAAGCCTCCCTTACTCCAACGCAGCATGAAGCCTATCTCCTTTGCTTCTCTTTTCTCT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2689073 64 -   3067355 CTG-GGGCAAGCCTCCCTTACTCCAACGCAGCATGAAGCCTATCTCCTTTGCTTCTCTTTTCTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67169 65 +    132061 CCAAGGACAAGCCTCCTTTACTCCAACCCAGCATGAAGCCTATCCCCCTTGCTTCTCTTTTCTCT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            21783 65 -    110772 CCAAGGGCAAGCCTCCTTTACTCCAACCCAGCATGAAGCCTATCCTCCTTGCTTCTCTTTTCTCT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     285879 64 -   1771730 CCAAGGACAAGCCTCCTTTACTCCAACCCAGCATGAAGCTTATTC-CCTTCCTTCTCTTTTCTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356751 65 -    457564 CCAAGGACAAGCCTCCTTTACTCCAACCCAGCATGAAGCCTATCCTCCTTGCTTCTCTTTTCTCT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               198621 65 + 123392446 CCAGGAACAAGCCTTCCTTACTCAAAGCCAGCATCAAGCCTCTCTCCTTCGCTTCTGTTTTCTCT
i micMur3.chr6             I 94 C 0
s proCoq1.NW_012152574v1     659345 65 +    730504 CCAGGAACAAGCCTCCCTCACTCCAACCCAGCACCAAGCCTCTCTCCCTCGCTTCTGTTTTCTCT
i proCoq1.NW_012152574v1   I 94 C 0
s otoGar3.GL873550           166235 65 +  18854210 CTAGAAACAAGCCTCCCTTACTCCAACCCAGCATCAATCCTTTCTCTCGTGCTTCTGTGTTTTGT
i otoGar3.GL873550         C 0 I 386
s canFam3.chr35            26269386 65 +  26524999 ACAGGACCAAGTCTCCTTTCCTTGAAGTCAGCACCAAGCTCATGTCCCTACCATTCCTGTCCTCT
i canFam3.chr35            I 2 C 0
s dasNov3.JH582591            91497 43 +    102524 ---------------CCCCGCTCCACGGCATCGACGGGCTCGCCTCC-------CTCTTCTCGCT
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57978172 694 -  94987271 I
e manLeu1.NW_012099233v1     259529 9570 +    290775 T

a score=733876.000000
s hg38.chr6_GL000254v2_alt   940123 65 +   4827813 TGGAAAGAACATTTTAATCAGAGCACTATCATGGACATAAGCAACTTTCATGTCATCTCTCAATC
s panTro5.chr6             29902921 65 + 175400573 TGGAAAGAACATTTTAATCAGAGCACTATCATGGACATAAGCAACTTTTGTGTCATCTCTCAATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136698 65 + 173848474 TGGAAAGAACATTTTAATCAGAGCACTATCATGGACATAAGCAACTTTCATGTCATCTCTCAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936328 65 +   6154872 TGGAAAGAACATTTTAATCAGAGCACTATCATGGACATAAGCAACTTTCATGTCATCTCTCAATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653299 65 + 122973662 TGGAAAGAACATTTTAATCAGAGCAGTGTCACGGGCATAAGCAACCTTCAGGTCATATCTCAATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136245 65 + 172585720 TGGACAGAACATTTTAATCAGAACAGTGTCATGGACATAAGCAACCTTCATGTCATCTCTCAATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799702 65 - 170955103 TGGACAGAACATTTTAATCAGAACAGTGTCATGGACATAAGCAACCTTCATGTCATCTCTCAATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845274 65 -   2996164 TGGACAGAACATTTTAATCAGAACAGTGTCATGGACATAAGCAACCTTCATGTCATCTCTCAATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594072 65 +    766320 TGGACAGAACATTTTAATCAGAACAATGTCATGGACATAAGCAACCTTCATGTCATCTCTCAATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051177 65 -  71996105 TGGACAGAACATTTTAATCAGAACAGTGTCATGGACATAAGCAACCTTCATGTCATCTCTCAATC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2689137 65 -   3067355 TGGACAGAACATTTTAATCAGAACAATGTCATGGACATAAGCAACCTTCATGTCATCTCTCAATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67234 65 +    132061 TGGAAAGAACATTTAAGTCAGAGCAGCGTTGTGGACATAAGCAACCTTCATGTTGTCTCTCAATC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            21848 65 -    110772 TGGAAACAACATTTAAGTCAGAGCAGCGTCATGGACATAAGCAACCTTCATGTTATCTCTCAATA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     285943 65 -   1771730 TGGAAAGAACATTTAAGTCGGAGCAGCGTCATGGACATAAGCAGCCTTCATGTTATCTCTCAATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356816 65 -    457564 TAGAAAAAACATTTAAGTCAGAGCAGCATTACGGACATAAGCAACCTTCCTGTTATCTCTCAATC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               198686 65 + 123392446 TGGAAAGAACTTTTTAATCTGAGCAGTATCACAGACAGAAGCAACCTACATGTACTCTCTCAATC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     659410 65 +    730504 TGGAAAGAATTTTTTAATCCGAGCAGTATCACGGACACAAGCAGCCTACATGTAATCTCTCAATC
i proCoq1.NW_012152574v1   C 0 I 146
s otoGar3.GL873550           166686 65 +  18854210 TGGAAAGAACTTTTTAATCAGAGCAATATATCAGACATAAACAACCAACATATAATCTCTCAATC
i otoGar3.GL873550         I 386 C 0
s canFam3.chr35            26269451 50 +  26524999 TGGAAGGGATGT--------GAGCACCCT-ATGTGCAT--GCTGACCCCTTGTCACTTGTC----
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            91540 56 +    102524 CAGAAAGGACTTCC---TCAGAGGGCTGTCACTGACCTAAGCAAC------AGGAGACCTCAGCC
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57978172 694 -  94987271 I
e manLeu1.NW_012099233v1     259529 9570 +    290775 T

a score=70711.000000
s hg38.chr6_GL000254v2_alt   940188 6 +   4827813 TCTAGA
s panTro5.chr6             29902986 6 + 175400573 TCTAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136763 6 + 173848474 TCTAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936393 6 +   6154872 TCTAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653364 6 + 122973662 TCTAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136310 6 + 172585720 TCTAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799767 6 - 170955103 TCTAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845339 6 -   2996164 TCTAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594137 6 +    766320 TCTAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051242 6 -  71996105 TCTAGA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2689202 6 -   3067355 TCTAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67299 6 +    132061 TCTAGA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            21913 6 -    110772 TCTAGA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     286008 6 -   1771730 TCTAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356881 6 -    457564 TCTAGA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               198751 6 + 123392446 TCTAGA
i micMur3.chr6             C 0 I 202
s otoGar3.GL873550           166751 3 +  18854210 CCT---
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26269501 5 +  26524999 -CTAGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            91596 6 +    102524 CCGAGG
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57978172 694 -  94987271 I
e proCoq1.NW_012152574v1     659475 146 +    730504 I
e manLeu1.NW_012099233v1     259529 9570 +    290775 T

a score=138724.000000
s hg38.chr6_GL000254v2_alt   940194 14 +   4827813 AACTGAAGACATCT
s panTro5.chr6             29902992 14 + 175400573 AACTGAAGACATCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136769 14 + 173848474 AACTGAAGACATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936399 14 +   6154872 AACTGAAGACATCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653370 14 + 122973662 AACTGAAGACATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136316 14 + 172585720 AACTGAAGACATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799773 14 - 170955103 AACTGAAGACATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845345 14 -   2996164 AACTGAAGACATTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594143 14 +    766320 AACTGAAGACATTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051248 14 -  71996105 AACTGAAGACATTT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2689208 14 -   3067355 AACTGAAGACATTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67305 14 +    132061 AACTGAAGATATTT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            21919 14 -    110772 AACTGAAGATATTT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     286014 14 -   1771730 AACTGAAGATATTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356887 14 -    457564 AACTGAAGATATTT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           166754  8 +  18854210 ------ACACGTTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26269506 14 +  26524999 GAATGCAGGTATCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            91602 11 +    102524 ---GGAGGACGTCC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198757 202 + 123392446 I
e mm10.chr17               57978172 694 -  94987271 I
e proCoq1.NW_012152574v1     659475 146 +    730504 I
e manLeu1.NW_012099233v1     259529 9570 +    290775 T

a score=54764.000000
s hg38.chr6_GL000254v2_alt   940208 9 +   4827813 ACTTCTCCT
s panTro5.chr6             29903006 9 + 175400573 ACTTCTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136783 9 + 173848474 ACTTCTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936413 9 +   6154872 ACTTCTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653384 9 + 122973662 ATTTCTCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136330 9 + 172585720 ACTTCTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799787 9 - 170955103 ACTTCTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845359 9 -   2996164 ACTTCTCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594157 9 +    766320 ACTTCTCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051262 9 -  71996105 ACTTCTCCT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2689222 9 -   3067355 ACTTCTCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67319 9 +    132061 GCTAGTACT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            21933 9 -    110772 ACTAGTTCT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     286028 9 -   1771730 ACTAATATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356901 9 -    457564 ACCAGTACT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           166762 9 +  18854210 ATGTGTCCC
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH582591            91613 9 +    102524 ACGTGGCCG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198757 202 + 123392446 I
e mm10.chr17               57978172 694 -  94987271 I
e proCoq1.NW_012152574v1     659475 146 +    730504 I
e canFam3.chr35            26269520 0 +  26524999 C
e manLeu1.NW_012099233v1     259529 9570 +    290775 T

a score=77142.000000
s hg38.chr6_GL000254v2_alt   940217 10 +   4827813 GAAAGACTTA-
s panTro5.chr6             29903015 10 + 175400573 GAAAGACTTA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136792 10 + 173848474 GAAAGACTTA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936422 10 +   6154872 GAAAGACTTA-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653393 10 + 122973662 AAAAGACTTA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136339 10 + 172585720 GAAAGACTTA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799796 10 - 170955103 GAAAGACTTA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845368 10 -   2996164 GAAAGACTTA-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594166 10 +    766320 GAAACACTTA-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051271 10 -  71996105 GAAAGACTTA-
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2689231 10 -   3067355 GAAAGACTTA-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67328 10 +    132061 GAAAGACTTA-
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            21942  8 -    110772 GAAAGACA---
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     286037 10 -   1771730 GAAAGACTTA-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356910 10 -    457564 GAAAGACTTA-
i aotNan1.NW_018509740v1   C 0 C 0
s dasNov3.JH582591            91622 11 +    102524 GTCAGCCTTgg
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198757 202 + 123392446 I
e mm10.chr17               57978172 694 -  94987271 I
e proCoq1.NW_012152574v1     659475 146 +    730504 I
e canFam3.chr35            26269520  0 +  26524999 C
e otoGar3.GL873550           166771  0 +  18854210 C
e manLeu1.NW_012099233v1     259529 9570 +    290775 T

a score=24168.000000
s hg38.chr6_GL000254v2_alt   940227 4 +   4827813 GATC
s panTro5.chr6             29903025 4 + 175400573 GATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136802 4 + 173848474 GATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936432 4 +   6154872 GATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653403 4 + 122973662 GATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136349 4 + 172585720 GATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799806 4 - 170955103 GATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845378 4 -   2996164 GATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594176 4 +    766320 GATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051281 4 -  71996105 GATC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2689241 4 -   3067355 GATC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378388            21950 4 -    110772 GATC
i saiBol1.JH378388         C 0 C 0
s dasNov3.JH582591            91633 4 +    102524 ggcc
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198757 202 + 123392446 I
e mm10.chr17               57978172 694 -  94987271 I
e proCoq1.NW_012152574v1     659475 146 +    730504 I
e canFam3.chr35            26269520 0 +  26524999 C
e otoGar3.GL873550           166771 0 +  18854210 C
e aotNan1.NW_018509740v1     356920 0 -    457564 C
e cebCap1.NW_016107755v1     286047 0 -   1771730 C
e calJac3.chrUn_GL286223      67338 0 +    132061 C
e manLeu1.NW_012099233v1     259529 9570 +    290775 T

a score=785185.000000
s hg38.chr6_GL000254v2_alt   940231 175 +   4827813 TTCAGCCAgccaggcacggtggctcatgcctgtaatcccagcactttgggaggccgaggtggatggataacctgaggtcaagacatcaagaccatcctggccaacatggtg-aaac-cctgtctctactaaaaatacaaaaattatctggacacggtggcacatgcctgt----agtccca
s panTro5.chr6             29903029 175 + 175400573 TTCAGCCAgccaggcacggtggctcatgcctgtaatcccagcactttgggaggccaaggtggatggataacctgaggtcaagacatcaagaccatcctggccaacatggtg-aaac-cctgtctctactaaaaatacaaaaattatctggacacggtggcacgtgcctgt----agtccca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136806 175 + 173848474 TTCAGCCAgccaggcacagtggctcatgcctgtaatcccagcactttgggaggccaaggtggatggataacctgaggtcaagacatcaagaccatcctggccaacatggtg-aaac-cctgtctctactaaaaatacaaaaattatctggacacggtggcacgtgcctgt----agtccca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936436 175 +   6154872 TTCAGCCAgccaggcacggtggctcacgcctgtaatcccagcactttgggaggccgaggtggatggataacctgaggtcaagacatcaagaccatcctggccaacatggtg-aaac-cctgtctctactaaaaatacaaaaattatctggacatggtggcacgtgcctgt----agtccca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653407 175 + 122973662 TTCAGCTggccaggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggattacctgaggtcaagagatcaagaccatcctggcgaacatggtg-aaac-cctgtatctactaaaaatacaaaaattatctggacatgatggcacgtgcctgt----agtccca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136353 176 + 172585720 TTCAGCCCAccaggcacggtggttcacacctgtaatcctagcactttgggaggccaaggtgggtgaatcacttgaggtcaagagatcgagaccatcctggccaacatggtg-aaactcccatctctactaaaaatacaaaaattatctgggcatggtggcacatgcctgt----agtccca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799810 176 - 170955103 TTCAGCCCAccaggcacagtggttcacacctgtaatcctagcactttgggaggccaaggtgggtggatcacttgaggtcaagagatcgagaccatcctggccaacatggtg-aaactcccatctctactaaaaatacaaaaattatctgggcatggtggcacatgcctgt----agtccca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845382 176 -   2996164 TTCAGCCCAccaggcacagtggttcacacctgtaatcctagcactttgggaggccaaggtgggtggatcacttgaggtcaagagatcgagaccatcctggccaacatggtg-aaacagccgtctctactaaaaatacaaaaattatctgggcatggtggcacatgcctgt----agtccca
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594180 176 +    766320 TTCAGCCCAccaggcacggtggttcacacctgtaatcctagcactttgagaggccaaggtgggtggatcacttgaggtcaagagatcgagaccatcctggccaacatggtg-aaactcccgtctctactaaaaatacaaaaattatctgggcatggtggcacatgcctgt----agtccca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051285 175 -  71996105 TTCAGCCCAccaggcacggtggttcacacctgtaatcctagcactttgggaggccaaggtgggtg-atcacttgaggtcaagagatcgagaccatcctggccaacatggtg-aaactcccgtctctactaaaaatacaaaaattatctgggcatggtggcacatgcctgt----agtccca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2689245 176 -   3067355 TTCAGCCCAccaggcgcagtggttcacacctgtaatcctagcacttcgggaggccaaggtgggtggatcacttgaggtcaagagatcgagaccatcctggccaacatggtg-aaacccctgtctctactaaaaatacaaaaattatctgggcatggtggcacatgcctgt----agtccca
i colAng1.NW_012115566v1   C 0 C 0
s dasNov3.JH582591            91637  68 +    102524 ctcgacctttctggtccagggaccc----------------------------------------------------------------------cttggccagtcaggtgtaaac-------------------------------------------cacaggcccttcccaagtccca
i dasNov3.JH582591         C 0 I 59
e micMur3.chr6               198757 202 + 123392446 I
e mm10.chr17               57978172 694 -  94987271 I
e proCoq1.NW_012152574v1     659475 146 +    730504 I
e canFam3.chr35            26269520   0 +  26524999 C
e saiBol1.JH378388            21954   0 -    110772 C
e otoGar3.GL873550           166771   0 +  18854210 C
e aotNan1.NW_018509740v1     356920   0 -    457564 C
e cebCap1.NW_016107755v1     286047   0 -   1771730 C
e calJac3.chrUn_GL286223      67338   0 +    132061 C
e manLeu1.NW_012099233v1     259529 9570 +    290775 T

a score=534690.000000
s hg38.chr6_GL000254v2_alt   940406 147 +   4827813 gctactcgagaggctgaggcaggagaatcgcttgaac---ccgggaagtggaggttgcagtaagccaagattgtgccactgcactccagcct-ggcaacacagcgagact--gtgtc-------tcaaaaaaaaaaaaaaaaaaaaaaaaGAGA----------------GAGAGA
s panTro5.chr6             29903204 163 + 175400573 gctactcgagaggctgaggcaggagaatcgcttgaac---ccgggaagtggaggatgcagtaagccaagattgtgccactgcactccagcct-ggcaacagagcgagact--gtgtc-------tcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGAGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30136981 132 + 173848474 gctactcgagaggctgaggcaggagaatcgcttgaac---ccgggaagtggaggatgcagtaagccaagattgtgccactgcactccagcct-ggcaacagagcgagact--gtgtc-------tccaaaaaaaaaaag-------------------------------aagaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936611 142 +   6154872 gcgactcgagaggctgaggcaggagaattgcttgaac---ccaggaagtggaggttgcagtaagccaagattgtgccactgcactccagcct-ggcaacacagcgagact--gtgtc-------tcaaaaaaaaaaaaaaaaaaaaaaa---------------------GAGAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653582 129 + 122973662 gctacttgagaggctgaggcagaagaatcgcttgaac---ccgggaggtggaggttgcagtaagccaagattgtgtcactgccctccagcct-ggcaacagagcgagact--gtgtc-------ccaaaaaaaaaaaaaaaa----------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136529 149 + 172585720 gctacttgggaagctgaggcaggagaatcgcttgaac---ccaggaggcggaggttgcagtaagccaggattgtgccactgtactccagcct-ggcaacagagcaagact--gtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa---------------------aaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29799986 149 - 170955103 gctacttgggaggctgaggcaggagaatcgcttgaac---ccaggaggcggaggttgcagtaagccaggattgtgccactgtactccagcct-ggcaacagagcaagatt--gtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa---------------------aaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845558 139 -   2996164 gctacttgggaggctgaggcaggagaatcgcttgaac---ccaggaggcggaggttgcagtaagccaggattgtgccactgcactccagcctgggcgacagagcgagactccgtctc-------------aaaaaaaaaaaaaaaaaaa---------------------aaaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594356 128 +    766320 gctacttggaaggctgaggcaggagaatcgcttgaac---ccgggaggtggaggttgcagtaagccaggattgtgccactgcactccagcct-ggcaacagagcaagatt--gtctc---------------------aaaaaaaaaaa---------------------aagaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051460 142 -  71996105 gctacttgggaggctgaggcaggagaatcgcttgaac---ccaggaggcagaggttgcagtaagccaggattgtgccactgcactccagcct-ggcaacagagcaagatt--gtctc-------aaaaaaaaaaaaaaaaaaaaaaaaa---------------------aaaaaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2689421 128 -   3067355 gctacttgggaggctgaggcagg-gaatcgcttgaactcgccgggaggcggaggttacagtaagccaggattgtgccactgcactccagcct-ggcaacagagcaagact--gtccc-----------------------aaaaaaaaa---------------------aaaaaa
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               198757 202 + 123392446 I
e mm10.chr17               57978172 694 -  94987271 I
e dasNov3.JH582591            91705  59 +    102524 I
e proCoq1.NW_012152574v1     659475 146 +    730504 I
e canFam3.chr35            26269520   0 +  26524999 C
e saiBol1.JH378388            21954   0 -    110772 C
e otoGar3.GL873550           166771   0 +  18854210 C
e aotNan1.NW_018509740v1     356920   0 -    457564 C
e cebCap1.NW_016107755v1     286047   0 -   1771730 C
e calJac3.chrUn_GL286223      67338   0 +    132061 C
e manLeu1.NW_012099233v1     259529 9570 +    290775 T

a score=1925.000000
s hg38.chr6_GL000254v2_alt   940553 1 +   4827813 G
s panTro5.chr6             29903367 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30137113 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936753 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30136678 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29800135 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845697 1 -   2996164 a
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594484 1 +    766320 a
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051602 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2689549 1 -   3067355 a
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           166771 1 +  18854210 G
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57978866 1 -  94987271 G
i mm10.chr17               I 694 C 0
e micMur3.chr6               198757 202 + 123392446 I
e dasNov3.JH582591            91705 59 +    102524 I
e proCoq1.NW_012152574v1     659475 146 +    730504 I
e canFam3.chr35            26269520 0 +  26524999 C
e saiBol1.JH378388            21954 0 -    110772 C
e aotNan1.NW_018509740v1     356920 0 -    457564 C
e cebCap1.NW_016107755v1     286047 0 -   1771730 C
e calJac3.chrUn_GL286223      67338 0 +    132061 C
e manLeu1.NW_012099233v1     259529 9570 +    290775 T
e nomLeu3.chr1a            74653711 0 + 122973662 C

a score=40458.000000
s hg38.chr6_GL000254v2_alt   940554 9 +   4827813 AGAGACTTG
s panTro5.chr6             29903368 9 + 175400573 AGAAACTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30137114 9 + 173848474 agaaaCTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936754 9 +   6154872 AGAGACTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653711 7 + 122973662 --aGACTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136679 9 + 172585720 aGAGACCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29800136 9 - 170955103 aGAGACCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845698 9 -   2996164 aGAGACCTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594485 9 +    766320 aGAGACTTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051603 9 -  71996105 AGAGACTTA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2689550 9 -   3067355 aGAGACCTA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           166772 9 +  18854210 AGTGGCTTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57978867 9 -  94987271 AAAATCTTG
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            91764 9 +    102524 gtgtacttt
i dasNov3.JH582591         I 59 C 0
e micMur3.chr6               198757 202 + 123392446 I
e proCoq1.NW_012152574v1     659475 146 +    730504 I
e canFam3.chr35            26269520 0 +  26524999 C
e saiBol1.JH378388            21954 0 -    110772 C
e aotNan1.NW_018509740v1     356920 0 -    457564 C
e cebCap1.NW_016107755v1     286047 0 -   1771730 C
e calJac3.chrUn_GL286223      67338 0 +    132061 C
e manLeu1.NW_012099233v1     259529 9570 +    290775 T

a score=78537.000000
s hg38.chr6_GL000254v2_alt   940563 8 +   4827813 GATCTTCA
s panTro5.chr6             29903377 8 + 175400573 GATCTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30137123 8 + 173848474 GATCTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936763 8 +   6154872 GATCTTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653718 8 + 122973662 GATCTTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136688 8 + 172585720 GATCTTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29800145 8 - 170955103 GATCTTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845707 8 -   2996164 GATCTTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594494 8 +    766320 GATCTTCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051612 8 -  71996105 GATCTTCA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2689559 8 -   3067355 GGTCTTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67338 8 +    132061 GATCTTCA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     286047 8 -   1771730 GATCTTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356920 8 -    457564 GATCTTCA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           166781 8 +  18854210 GACAGTTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57978876 8 -  94987271 GCTATTCA
i mm10.chr17               C 0 C 0
s dasNov3.JH582591            91773 8 +    102524 aagcttca
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198757 202 + 123392446 I
e proCoq1.NW_012152574v1     659475 146 +    730504 I
e canFam3.chr35            26269520 0 +  26524999 C
e saiBol1.JH378388            21954 0 -    110772 C
e manLeu1.NW_012099233v1     259529 9570 +    290775 T

a score=300129.000000
s hg38.chr6_GL000254v2_alt   940571 31 +   4827813 ACTTGAAGTCAAGGGAC----TTGAGCCTATGATA
s panTro5.chr6             29903385 31 + 175400573 ACTTGAAGTCAAGGGAC----TTGAGCCTATGATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30137131 31 + 173848474 ACTTGAAGTCAAGGGAC----TTGAGCCTATGATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936771 31 +   6154872 ACTTGAAGTCAAGGGAC----TTGAGCCTATGATA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653726 31 + 122973662 ACTTGAAGTCAAGGGAC----TTGAGCCTATGATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136696 31 + 172585720 ACTTGAAGTCGAGGGAC----TTGAGCCTATGATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29800153 31 - 170955103 ACTTGAAGTCGAGGGAC----TTGAGCCTATGATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845715 31 -   2996164 ACTTGAAGTCGAGGGAC----TTGAGCCTATGATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594502 31 +    766320 ACTTGAAGTCGAGGGAC----TTGAGCCTATGATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051620 31 -  71996105 ACTTGAAGTCGAGGGAC----TTGAGCCTATGATC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2689567 31 -   3067355 ACTTGAAGTCGAGGGAC----TTGAGCCTATGATC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67346 31 +    132061 ACTTGAAGTCAAGGGAC----TTGAGCCTATGATC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     286055 31 -   1771730 ACTTGAAGTCAAGGGAC----TTGAGCCTATGATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356928 31 -    457564 ACTTGAAGTCAAGGGAC----TTGAGCCTATGAGC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           166789 31 +  18854210 TCTTGAAGCCAAGCGAT----GTGAGCTTATGATC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57978884 31 -  94987271 TTACGAAGCCAGTGGAC----TTAAAACTTTGATC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26269520 35 +  26524999 ATCTGGAGCCAAGGCATGCAAGTAAGCAGGTGGCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            91781 30 +    102524 -cctcaagctcagggac----ccccggttaggaac
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198757 202 + 123392446 I
e proCoq1.NW_012152574v1     659475 146 +    730504 I
e saiBol1.JH378388            21954  0 -    110772 C
e manLeu1.NW_012099233v1     259529 9570 +    290775 T

a score=715381.000000
s hg38.chr6_GL000254v2_alt   940602 83 +   4827813 -----TTAAGCTCTCTTTCAAC--------TCCAAGTCTGACCAGGCTGGACAGA----------GGTACACTAGGAGAGCATCTATAGAGCATTCATCCTCTTCA--
s panTro5.chr6             29903416 83 + 175400573 -----TTAAGCTCTCTTTCAAC--------TCCAAGTCTGACCAGGCTGGACAGA----------GGTACACTAGGAGAGCATCTATAGAGCATTCATCCTCTTCA--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30137162 83 + 173848474 -----TTAAGCTCTCTTTCAAC--------TCCAAGTCTGACCAGGCTGGACAGA----------GGTACACTAGGAGAGCATCTATAGAGCATTCATCCTCTTCA--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936802 83 +   6154872 -----TTAAGCTCTCTTTCAAC--------TCCAAGTCTGACCAGGCTGGACAGA----------GGTACACTAGGAGAGCATCTATAGAGCATTCATCCTCTCCA--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653757 83 + 122973662 -----TTAAGCTCTCTCTCAAC--------TCCTAGTCTGACCAGGCTGGACAGA----------GGTACACTAGGAGAGCATCTATAGAGCATTCGTCCTCTCCA--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136727 83 + 172585720 -----TTAAGCTCTCTTTCAAC--------TCCAAGTCTGACCAGGCTGGACAGA----------GGTTCACTAGGAGAGCATCTGTAGAGCATTCATCCTCCCCA--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29800184 83 - 170955103 -----TTAAGCTCTCTTTCAAC--------TCCAAGTCTGACCAGGCTGGACAGA----------GGTTCACTAGGAGTGCATCTGTAGAGCATTCATCCTCCCCA--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845746 83 -   2996164 -----TTAAGCTCTCTTTCAAC--------TCCAAGTCTGACCAGGCTGGACAGA----------GGTTCACTAGGAGAGCATCTGTAGAGCATTCATCCTCCCCA--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594533 83 +    766320 -----TTAAGCTCTCTTTCAAC--------TCCAAGTCTGACCAGGCTGGACAGA----------GGTTCACTAGGAGAGCATCTGTAGAGCATTCATCCTCCCCA--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051651 83 -  71996105 -----TTAAGCTCTCTTTCAAC--------TCCAAGTCTGACCAGGCTGGACAGA----------GGTTCACTAGGAGAGCACCTGTAGAGCATTCATCCTCCCCA--
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2689598 83 -   3067355 -----TTAAGCTCTCTTTCAAC--------TCCAAGTCTGACTAGGCTGGACAGA----------GGTTCACTAGGAGAGCATCTGTAGAGCATTCATCCTCCCCA--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67377 81 +    132061 -----TTAAGCTCTCTTTCAAC--------TCCAAATCTGACTGGGCTGGAAAGA----------GGTACACTAGGAGGGCA--TATAGAGCATTCATTCTCTTGA--
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            21954 81 -    110772 -----TTAAGCTCTCTTTCAAC--------TCCAAGTCTGACTGGGCTGGAAAGA----------GGTACACTAGGAGCCCA--TATAGAGCATTCCTTCTCTCGA--
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     286086 81 -   1771730 -----TTAAGCTCTCTTTCAAC--------TCCAAGTCTGACTGGGCTGGAAAGA----------GGTACACTATGAGAGCA--TATAGAGCATTCATTCTCTCGA--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     356959 81 -    457564 -----TTAAGCTCTCTTTCAAC--------TCCAAGTCTGACTGGGCTGGAAAGA----------GGTACCCTAGGAGGGCA--TATAGAGCATTCCTTCTCTCGA--
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           166820 82 +  18854210 -----CCAAGGTGTCTTTCACT--------TCCACACCTGACCTGGCTGGAAAGG----------TGCAGGCTAGGAGAGGATACACA-AGCCTTGATCCTCTCAG--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57978915 63 -  94987271 -----TCGGGGTTTCCTCTAGT--------CCCAAGTCTAACGCAGATGGAAAGATACTGAGCCTGAAGCACTAGG--------------------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26269555 61 +  26524999 -----TCAAGCCCTCTTGCAGC--------TTCAGGTGGGACCAGGT------GA----------GG--------------ATGTGCGGAGCCCTGGTACCAGG----
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            91811 90 +    102524 TAGAGGTACGTTTCCTCTAAACCAGCCCCTCCCGGCTCGAATCGGGCAGGGCAGG----------CG-GGACCAAGCGGG--TCTGCAGGGC-----TCTGCCCTGGG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198757 202 + 123392446 I
e proCoq1.NW_012152574v1     659475 146 +    730504 I
e manLeu1.NW_012099233v1     259529 9570 +    290775 T

a score=244232.000000
s hg38.chr6_GL000254v2_alt   940685 20 +   4827813 TCAGCTCTCCATCCTTTCAG
s panTro5.chr6             29903499 20 + 175400573 TCAGCTCTCCATCCTTTCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30137245 20 + 173848474 TCAGCTCTCCATCCTTTCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936885 20 +   6154872 TCAACTCTCCATCCTTTCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653840 20 + 122973662 TCAGCTCTCCATCCGTTCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136810 20 + 172585720 TCAGCTCTCCATCCTTTCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29800267 20 - 170955103 TCAGCTCTCCATCCTTTCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845829 20 -   2996164 TCAGCTCTCCATCCTTTCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594616 20 +    766320 TCAGCTCTCCATCCTTTCTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051734 20 -  71996105 TCAGCTCTCCATCCTTTCAG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2689681 20 -   3067355 TCAGCTCTCCATCCTTTCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67458 20 +    132061 TCAGCTCTCCATCCTTTCAG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            22035 20 -    110772 TCAGCTCTCCATCCTTTCAG
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     286167 20 -   1771730 TCAGCTCTCCATCCTTTCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     357040 20 -    457564 TCAGCTCTCCATCCTTTCAG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     659621 20 +    730504 TCAGCTCTCCATCCCTCCAG
i proCoq1.NW_012152574v1   I 146 C 0
s otoGar3.GL873550           166902 20 +  18854210 TCAACTCTCCATCCTCCCAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57978978 16 -  94987271 TCAGCTCACCATGCTG----
i mm10.chr17               C 0 C 0
s canFam3.chr35            26269616 19 +  26524999 ACAGC-CTCCTCTCCCCCAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            91901 13 +    102524 TCAGC-------CCACTCGA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198757 202 + 123392446 I
e manLeu1.NW_012099233v1     259529 9570 +    290775 T

a score=541837.000000
s hg38.chr6_GL000254v2_alt   940705 44 +   4827813 ---GGGTTATCCTGGGCCCTTTTCCCCTTCCTCCCTGCTTGGCAATT
s panTro5.chr6             29903519 44 + 175400573 ---GGGCTATCCTGGGCCCTTTTCCCCTTCCTCCCTGCTTGGCAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30137265 44 + 173848474 ---GGGCTATCCTGGGCCCTTTTCCCCTTCCTCCCTGCTTGGCAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936905 44 +   6154872 ---GGGTTATCCTGGGCCCTTTTCCCCTTCCTCCCTGCTTGGCAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653860 44 + 122973662 ---GGGTTATCCTGGGCCCTTTCTTCCTTCCTCCCTGCTTGGCAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136830 44 + 172585720 ---GGGTTATTCTGGGACCTTTTTACCTTCCTCCCTGCTTGGCAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29800287 44 - 170955103 ---GGGTTATTCTGGGACCTTTTTACCTTCCTCCCTGCTTGGCAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845849 44 -   2996164 ---GGGTTATTCTGGGACCTTTTTACCTTCCTCCCTGCTTGGTAATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594636 44 +    766320 ---GGGTTATTCTGGGCCCTTTTTACCTTCCTCCCTGCTTGGCAATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051754 44 -  71996105 ---GGGTTATTCTGGGCCCTTTTTACCTTCCTCCCTGCTTGGCAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     249959 44 +    290775 ---GGGTTATTCTGGGCCCTTTTTACCTTCCTCCCTGCTTGGCAATT
i manLeu1.NW_012099233v1   T 9570 C 0
s colAng1.NW_012115566v1    2689701 44 -   3067355 ---GGGTTATTCTGGGTCCTTTTTACCTTCCTCCCTGCTTGGCAATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67478 44 +    132061 ---GGTTTATCCTGGGCCCTTTTTACCTTCATCTTTGCTTGGCAATT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            22055 44 -    110772 ---GGTTTATCCTGGGCCCTTTTTACCTTTGTCTCTGCTTGGCAATT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     286187 44 -   1771730 ---GGTTTATCCTGGGTCCTTTTTACCTTCGTCTCTGCTTGACAATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     357060 44 -    457564 ---GGTTTAACCTGGGCCCTTTTTACCTTCGTATCTGCTTGGCAATT
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     659641 44 +    730504 ---GGCTTGTCCCAGGCCCTTTGTGTCTTCCTCTCTCCCTTGCAATT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           166922 42 +  18854210 ---GGGTTGACCCAGGCCCTTCTTTTCTTCCTCTCT--TTTGCAATT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57978994 44 -  94987271 ---GGACTGTCCTGGGTCTTTTTAACCCTCCTCTCTCCTCTGCAGTT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26269635 40 +  26524999 ----GGCGTACCTGGGCCCTT---ACCTGCCCCCCCGCCTTTCAATG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            91914 43 +    102524 GGGCGCTCCTTCCAGGCTCTC----CATTGCCCTCTCCCTCGCGCTT
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               198757 202 + 123392446 I

a score=170231.000000
s hg38.chr6_GL000254v2_alt   940749 9 +   4827813 CTTACCTGA
s panTro5.chr6             29903563 9 + 175400573 CTTACCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30137309 9 + 173848474 CTTACCTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936949 9 +   6154872 CTTACCTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653904 9 + 122973662 CTTACCTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136874 9 + 172585720 CTTACCTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29800331 9 - 170955103 CTTACCTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845893 9 -   2996164 CTTACCTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594680 9 +    766320 CTTACCTGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051798 9 -  71996105 CTTACCTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     250003 9 +    290775 CTTACCTGA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2689745 9 -   3067355 CTTACCTGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67522 9 +    132061 CTTACCTGA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            22099 9 -    110772 CTTACCTGA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     286231 9 -   1771730 CTTACCTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     357104 9 -    457564 CTTACCTGA
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               198959 9 + 123392446 CTTACCTGA
i micMur3.chr6             I 202 C 0
s proCoq1.NW_012152574v1     659685 9 +    730504 CTTACCTGA
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           166964 9 +  18854210 CTTACCTGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57979038 9 -  94987271 TTAAAATGA
i mm10.chr17               C 0 I 479
s canFam3.chr35            26269675 9 +  26524999 CTCACCTGA
i canFam3.chr35            C 0 I 3
s dasNov3.JH582591            91957 9 +    102524 CTTCCCGGA
i dasNov3.JH582591         C 0 C 0

a score=1326586.000000
s hg38.chr6_GL000254v2_alt   940758 93 +   4827813 AAGG---CCTTCTGTGTTT-----GGGAGA------TGGACAAACTCTCTCCACTGTTCCTCTTCTTGCTCAAGCTTGGTGATTAGCTCTGGCTTATGCAGAAAGAT
s panTro5.chr6             29903572 93 + 175400573 AAGG---CCTTCTGTGTTT-----GGGAGA------TGGACAAACTCTCTCCACTGTTCCTCTTCTTGCTCAAGCTTGGTGATTAGCTCTGGCTTATGCAGAAAGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30137318 93 + 173848474 AAGG---CCTTCTGTGTTT-----GGGAGA------TGGACAAACTCTCTCCACTGTTCCTCTTCTTGCTCAAGCTTGGTGATTAGCTCTGGCTTATGCAGAAAGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5936958 93 +   6154872 AAGG---CCTTCTGTGTTT-----GGGAGA------TGGACAAACTCTCTCCACTGTTCCTCTTCTTGCTCAAGCTTGGTGATTAGCTCTGGCTTATGCAGAAAGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74653913 93 + 122973662 AAGG---CCTTCTGTGTTT-----GGGAGA------TGGACAAACTCTCTCCACTGTTCCTCTTCTTGCTCGAGCTTGGTGATTAGCTCTGGCTTATGCAGAAAGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136883 93 + 172585720 AAGG---CCTTCTGTGTTT-----GGGAGA------TGGACAAACTCTCTCCATTGTTCCTCTTCTTGCTCAAGCTTGGTGATTAGCTCTGGCTTATGCAGAAAGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29800340 93 - 170955103 AAGG---CCTTCTGTGTTT-----GGGAGA------TGGACAAACTCTCTCCATTGTTCCTCTTCTTGCTCAAGCTTGGTGATTAGCTCTGGCTTATGCAGAAAGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845902 93 -   2996164 AAGG---CCTTCTGTGTTT-----GGGAGA------TGGACAAACTCTCTCCATTGTTCCTCTTCTTGCTCAAGCTTGGTGATTCGCTCTGGCTTATGCAGAAAGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594689 93 +    766320 AAGG---CCTTCTGTGTTT-----GGGAGA------TGGACAAACTCTCTCCATTGTTCCTCTTGTTGCTCAAGCTTGGTGATTCGCTCTGGCTTATGCAGCAAGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051807 93 -  71996105 AAGG---CCTTCTGTGTTT-----GGAAGA------TGGACACGCTCTCTCCATTGTTCCTCTTCTTGCTCAAGCTTGGTGATTCGCTCTGGCTTATGCAGCAAGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     250012 93 +    290775 AAGG---CCTTCTGTGTTT-----GGGAGA------TGGACAAACTCTCTCCATTGTTCCTCTTCTTGCTCAAGCCTGGTGATTCGCTCTGGCTTATGCAGCAAGAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2689754 93 -   3067355 AAGG---CCTTCTGTGTTT-----GGGCGA------TGGACAAACTCTCTCCGTTGTTCCTCTTCTTGCTCAAGCTTAGTGATTAGCTCTGGCTTATGTAGAAAGAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67531 93 +    132061 AAGG---CCTTCTGTGTTT-----GGGAGC------TGGAGAAACACTCTCCACTGTTTCTCTTGGTGCTCAAGCTTGGTGATTAGCTCTGGCTTATGCAGAAACAT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            22108 93 -    110772 AAGG---CCTTCTGTGTTT-----GGGAGA------TGGAGAAACACTCTCCACTGTTTCTCTTGTTGCTCAAGCTTGGTGATTAGCTCTGGCTTATGCAGAAACAT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     286240 93 -   1771730 AAGG---CCTTCTGTGTTT-----GGGAGA------TGGAGAAACACTCTCCACTGTTTCTCTTGTTGCTCAAGCTTGGTGATTAGCTCTGGCTTATGCAGAAACAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     357113 93 -    457564 AAGG---CCTTCTGTGTTT-----GGGAGA------TGGAGAAACACTCTCCACTGTTTCTCTTGTTGCTCAAGCTTGGTGATCAGCTCTGGCTTATGCACAAACAT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               198968 96 + 123392446 AAGGAGACCTTCTCTGTCT-----GGGGGA------TGGAGACACGCTCTCCACTGCTCCTCTTCTTGCTCCAGCTTGCTGACCAGATCTGGTTTATGCAGAAAGGC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     659694 96 +    730504 AAGGAGACCTTCTCTGTCT-----GGGGGA------CGGAGACACGCTCTCCACTGCTCCTCTTCTTGCTCAAGCTTGCTGATCAGATCTGGTTTATGCAGAAAGAT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           166973 96 +  18854210 AAGGAGACCTTCTCTATTT-----GAGAGG------TGGAGATATATTCTCCACTGTTCCTCTTCTTGTTCAAGTTTGCTGATCAAATCTGGTTTATGCAGAAAGAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26269687 95 +  26524999 GAGG---CCTTCTCCATTC-----AGGAGACAGAGCTGGAATTCTGCTCTCTGCTGGCTTTCTTCTTGTCCAAGTTTGATGATCAGATCTGGGTTAGATAGAT----
i canFam3.chr35            I 3 C 0
s dasNov3.JH582591            91966 79 +    102524 GGGG-------CTGCGTCTCCACGGGGGAA------TGGAGACCTCGCCTCCGCGGT---TCTTCTTGCTCAAGCTTG------------GGCTCAAGCAGGAAGAT
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57979047 479 -  94987271 I

a score=1816282.000000
s hg38.chr6_GL000254v2_alt   940851 119 +   4827813 TCTGGCTGATGTGTGGGAATGA--GAAAGAG-TTGAGTTGGTCCCAGGTATGGCCCCTTCACATCTGATGGGGACAACAG------GCTACCT---CCTGTAGCCTTTGTTTAAGAACCATAACCT-GGGAC
s panTro5.chr6             29903665 119 + 175400573 TCTGGCTGATGTATGGGAATGA--GAAAGAG-TTGAGTTGGTCCCAGGTATGGCCCCTTCACATCTGATGGGGACAACAG------GCTACCT---CCTGTAGCCTTTGTTTAAGAACCATAACCT-GGGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30137411 119 + 173848474 TCTGGCTGATGTATGGGAATGA--GAAAGAG-TTGAGTTGGTCCCAGGTATGGCCCCTTCACATCTGATGGGGACAACAG------GCTACCT---CCTGTAGCCTTTGTTTAAGAACCATAACCT-GGGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5937051 119 +   6154872 TCTGGCTGATGTGTGGGAATGA--GAAAGAG-TTGAGTTGGTCCCAGGTATGGCCCCTTCACATCTGATGGGGACAACAG------GCTACCT---CCTGTAGCCTTTGTTTAAGAACCATAACCT-GGGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74654006 119 + 122973662 TCTGGCTGATGTGTGGGAATGA--GAAAGAG-TTGAGTTGGTCCCAGGTGTGGCCCCTTCACATCTGATGGGGACAGCAG------GCTACCT---CCTGTAGCCTTTGTTTAAGAACCATAACCT-GGGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30136976 119 + 172585720 TCTGGCTGATGTGTGGGAATGA--GAAAGAA-TTGAGTTGGTCCCAGGTGTGGCCCCTTCACATCTGATGGGGACAACAG------GTTACCT---CCTGTAGCCTTTGTTTAAGAACCATAACCT-GGGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29800433 119 - 170955103 TCTGGCTGATGTGTGGGAATGA--GAAAGAG-TTGAGTTGGTCCCAGGTGTGGCCCCTTCACATCTGATGGGGACAACAG------GTTACCT---CCTGTAGCCTTTGTTTAAGAACCATAACCT-GGGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2845995 119 -   2996164 TCTGGCTGATGTGTGGGAATGA--GAAAGAG-TTGAGTTGGTCCCAGGTGTGGCCCCTTCACATCTGATGGGGACAACAG------GTTACCT---CCTGTAGCCTTTGTTTAAGAACCATAACCT-GGGAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594782 119 +    766320 TCTGGCTGATGTGTGGGAATGA--GAAAGAG-TTGAGTTGGTCCCAGGTGTGGCCCCTTCACATCTGATGGGGACAACAG------GTTACCT---CCTGTAGCCTTTGTTTAAGAACCATAACCT-GGGAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29051900 119 -  71996105 TCTGGCTGATGTGTGGGAATGA--GAAAGAG-TTGAGTTGGTCCCAGGTGTGGCCCCTTCACATCTGATGGGGACAACAG------GTGACCT---CCTGTAGCCTTTGTTTAAGAACCATAACCT-GGGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     250105 119 +    290775 TCTGGCTGATGTGTGGGAATGA--GAAAGAG-TTGAGTTGGTCCCAGGTGTGGCCCCTTCACATCTGATGGGGACAACAG------GTTACCT---CCTGTAGCCTTTGTTTAAGAACCATAACCT-GGGAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2689847 119 -   3067355 TCTAGCTGATGTGTGGGAATGA--GAAAGAG-TTGAGTTGGTCCCAGGTGTGGCCCCTTCACATCTGATGGGGACAACAG------GTTACCT---CCTGTAGCCTTTGTTTAAGAACCATAACCT-GGGAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67624 119 +    132061 TCTGGCTGATGTGTGGGAATGA--GAAAGAG-TTGAGTTGGTCCTAGGTGTGGCCCCTTCACATCTGATGGGGACGATAG------GCTACCT---CTTGTAGCCTTTATTTAAGAACCATAACCT-GGGAC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            22201 119 -    110772 TCTGGCTGATGTGTGGGAATGA--GAAAGAG-TTGAGTTGGTCCTAGGTGTGGCCCCTTCACATCTGATGGGGACAACAG------GCTACCT---CTTGTAGCCCTTATTTAAGAACCATAACCT-GGGAC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     286333 120 -   1771730 TCTGGCTGATGTGTGGGAATGA--GAAAAAGTTTGAGTTGGTCCTAGGTGTGGCCCCTTCACATCTGATGGGGACAACAG------GCTACCT---CTTGTAGCCTTTATTTAAGAACCATAACCT-GGGAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     357206 119 -    457564 TCTGGCTGATGTGTGGGAATGA--GAAAGAG-TTGAGTTGGTCCTGGGTGTGGCCCCTTCACATCTGATGGGGACAACAG------GCTACCT---CTTGTAGCCTTTATTTAAGAACCATAACCT-GGGAC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               199064 113 + 123392446 TCTGGCTGGCGAGTGGG-ATGA--GAAAGAG-GTGAGTTGGTCCCAGGCT--GCACCTTCATACCTGAT--GGACAACAG------GCTGCCT---CCTGTGCCCTTTGTTTCAGAA-CACAGCCT-GGGAC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     659790 115 +    730504 TCTGGCTGGAAAGTGGG-ATGA--GAAAGAG-TTGAGTTGGTTCCAGGCT--GCACTTTCCTACCTGATGGGGACAACAG------GCTACTT---CTTGTACCCTTTGTTTCAGAA-CACAGTCT-GGGAC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           167069 118 +  18854210 TCTGGCTGGAGAATGGA-ATGA--GAAAGAG-TTCAGTTGGTCCCAGACTCGGCACTTTCATACCTGAAGGGGACAA-AG------GCTACCT---CCTATATTCTTTGTTTCAGAACCATAGCTTGGGGGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57979526 112 -  94987271 TCTGTCTGCTGTATGGAAATGA--AGCAAAG-------TGGTCCCATGCTAAGCCCCTTTATGTCTTATAAACA-AACAA------GCTACCT---CCTATAGGCTTGCTTTAAGAACATTAATCT-Agggc
i mm10.chr17               I 479 I 1288
s canFam3.chr35            26269782 121 +  26524999 TCTGAGCTGGGGGTGGATAGGACCGGAAGAG-TCAA---GGTCGCAGGCTTGGGCCCCTCATACCCAGTGGGGACAACAG------ACTACCTTCATCGGTGTCTGTGGTTTAAGAACCACAATCT-GGGAC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            92045 107 +    102524 TCTGGCTCAGGGGTGAGAAGGA------GAG-TTGAGTTGGTCCCACCTTGGGCCC--TTACGCCCGCT-GGGACGCCAGCCCTTCGCTTCCT---CCTG----------CTGAGAG-CATCACCG-GGGGC
i dasNov3.JH582591         C 0 C 0

a score=353249.000000
s hg38.chr6_GL000254v2_alt   940970 24 +   4827813 ATGTAGATGCGGAAAGGAGACATT
s panTro5.chr6             29903784 24 + 175400573 ATGTAGATGCGGAAAGGAGACATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30137530 24 + 173848474 ATGTAGATGCGGAAAGGAGACATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5937170 24 +   6154872 ATGTAGATGCGGAAAGGAGACATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74654125 24 + 122973662 ACGTAGATGCAGAAAGGAGACATT
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             30137095 24 + 172585720 ATGTAGATGCAGAAAGGAGACATT
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29800552 24 - 170955103 ATGTAGATGCAGAAAGGAGACATT
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2846114 24 -   2996164 ATGTAGATGCAGAAAGGAGACATT
i macNem1.NW_012011356v1   C 0 I 1
s cerAty1.NW_012002711v1     594901 24 +    766320 ATGTAGATGCAGAAAGGAGACATT
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17            29052019 24 -  71996105 ATGTAGATGCAGAAAGGAGACATT
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012099233v1     250224 24 +    290775 ATGTAGATGCAGAAAGGAGACATT
i manLeu1.NW_012099233v1   C 0 I 1
s colAng1.NW_012115566v1    2689966 24 -   3067355 ATGTAGATGCAGAAAGGAGACATT
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chrUn_GL286223      67743 24 +    132061 ATGTAGATGCAGAAAGGAGACATT
i calJac3.chrUn_GL286223   C 0 I 1
s saiBol1.JH378388            22320 24 -    110772 ATGTAGATGCAGAAAGGAGACATT
i saiBol1.JH378388         C 0 I 1
s cebCap1.NW_016107755v1     286453 24 -   1771730 ATGTAGATGCAGAAAGGAGACATT
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018509740v1     357325 24 -    457564 ATGTAGATGCAGAAAGGAGACATT
i aotNan1.NW_018509740v1   C 0 I 1
s micMur3.chr6               199177 24 + 123392446 ACTTAGATGCAGGGAGGAGGCATT
i micMur3.chr6             C 0 I 24
s proCoq1.NW_012152574v1     659905 24 +    730504 ACGTAGATGCAGGGAGGAGGCAAT
i proCoq1.NW_012152574v1   C 0 I 1
s otoGar3.GL873550           167187 24 +  18854210 ACTTAGATGCAGGAGGAAGATATG
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26269903 22 +  26524999 ATGCAGGGGCAGGGAGGAAACC--
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            92152 22 +    102524 -CGAGGGTGCAGGG-GGAGACGGC
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57979638 1288 -  94987271 I

a score=289080.000000
s hg38.chr6_GL000254v2_alt   940994 24 +   4827813 AAAAGGccagctgctagcaaagta
s panTro5.chr6             29903808 24 + 175400573 AAAAGGccagctactagcaaagta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30137554 24 + 173848474 AAAAGGccagctactagcaaagta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5937194 24 +   6154872 AAAAGGccagctgctagcaaagta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74654150 24 + 122973662 AAAAGGccagctgctagcaaagta
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30137120 24 + 172585720 AAAAGGTcagctgctagcaaagta
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29800577 24 - 170955103 AAAAGGTcagctgctagcaaagta
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2846139 24 -   2996164 AAAAGGTcagctgctagcaaagta
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1     594926 24 +    766320 AAAAGTTcagctgctagcaaagta
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17            29052044 24 -  71996105 AAAAGGTcagctgctagcaaagta
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012099233v1     250249 24 +    290775 AAAAGGTcagctgctagcaaagta
i manLeu1.NW_012099233v1   I 1 C 0
s colAng1.NW_012115566v1    2689991 24 -   3067355 AAAAGGTcagctgctagcaaagta
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chrUn_GL286223      67768 24 +    132061 AAAAGGccagctgctagcaaagta
i calJac3.chrUn_GL286223   I 1 C 0
s saiBol1.JH378388            22345 24 -    110772 AAAAGGccagctgctagcaaaata
i saiBol1.JH378388         I 1 C 0
s cebCap1.NW_016107755v1     286478 24 -   1771730 AAAAGGccagctgctagtaaggta
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018509740v1     357350 24 -    457564 AAAAGAccagctgctagcaaagta
i aotNan1.NW_018509740v1   I 1 C 0
s proCoq1.NW_012152574v1     659930 22 +    730504 GAAAGGCCAGTTCA-AGCAGAGT-
i proCoq1.NW_012152574v1   I 1 C 0
s otoGar3.GL873550           167212 23 +  18854210 GAAAGGCCAGTTCCTACCAGAGT-
i otoGar3.GL873550         I 1 C 0
s canFam3.chr35            26269925 14 +  26524999 ----------CTCCTAACGAAGTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            92174 24 +    102524 AGGAGGCCAGCCCCTAGCCAGGGC
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               199201 24 + 123392446 I
e mm10.chr17               57979638 1288 -  94987271 I

a score=1332578.000000
s hg38.chr6_GL000254v2_alt   941018 101 +   4827813 cctggttctca--ggagtgacttagt-----aaata----tttgtttgatgaatg-gaAAAATTTGCA----------TATTTTGAGAACACTGTCATCATGTTACAAGTGTTATCTTTGCCT
s panTro5.chr6             29903832 101 + 175400573 cctggttctca--ggagtgacttagt-----aaata----tttgtttgatgaatg-gaAAAATTTGCA----------TATTTTGAGAACACTGTCATCATGTTACAAGTGTTATCTTTGCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30137578 101 + 173848474 cctggttctca--ggagtgacttagt-----aaata----tttgtttgatgaatg-gaAAAATTTGCA----------TATTTTGAGAACACTGTCATCATGTTACAAGTGTTATCTTTGCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5937218 101 +   6154872 cctggttctca--ggagtgacttagt-----aaata----tttgtttgatgaatg-gaAAAATTTGCA----------TATTTTGAGAACACTATCATCATGTTACAAGTGTTATCTTTGCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74654174 106 + 122973662 cctggttctca--ggagtgacttagtcatcaaaata----tttgtttgatgaatg-gaAAAATTTGCA----------TATTTTGAGAACACTGTCATCATGTTACAAGTGTTATCTTTGCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30137144 101 + 172585720 tctggttctca--ggagtgacttagt-----aaata----tttgtttgatgaatg-gaAAAATTTGCA----------TATTTTGAGAACACTGTCATCATGTTACAAGTGTTATCTTTGCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29800601 101 - 170955103 tctggttctca--ggagtgacttagt-----aaata----tttgtttgatgaatg-gaAAAATTTGCA----------TATTTTGAGAACACTGTCATCATGTTACAAGTGTTATCTTTGCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2846163 101 -   2996164 tctggttctca--ggagtgacttagt-----aaata----tttgtttgatgaatg-gaAAAATTTGCA----------TATTTTGAGAACACTGTCATCATGTTACAAGTGTTATCTTTGCCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     594950 101 +    766320 tctggttctca--ggagtgacttagt-----aaata----tttgtttgatgaatg-gaAAAATTTGCA----------TATTTTGAGAACACTGTCATCATGTTACAAGTGTTATCTTTGCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29052068 101 -  71996105 tctggttctca--ggagtgatttagt-----aaata----tttgtttgatgaatg-gaAAAATTTGCA----------TATTTTGAGAACACTGTCATCATGTTACAAGTGTTATGTTTGCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     250273 101 +    290775 tctggttctca--ggagtgacttagt-----aaata----tttgtttgatgaatg-gaAAAATTTCCA----------TATTTTGAGAACACTGTCATCATGTTACAAGTGTTATCTTTGCCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2690015 101 -   3067355 tctggttctca--ggagtgacttagt-----aaata----tttgtttgatgaatg-gaAAAATTTGCA----------TATTTTGAGAACACTGTCATCATGTTACAAGTGTTATCTTTGCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67792 105 +    132061 cctggttctca--ggagtgacttagt-----aaatattggttggttggatgaatG-AAAAAATTTGCA----------TATTTTGAGAACACTGTCATCATGTTACAAGTTTTATCTTTGCCT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            22369 106 -    110772 cctggttctca--ggagtgacttagt-----aaatactggttggttggctgaatgaaAAAAATTTGCA----------TATTTTGAGAACACTGTCATCATGTTACAAGTGTTATCTTTGCCT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     286502 105 -   1771730 cctggttctca--ggagtgacttagt-----aaatattggttggttggatgaatG-AAAAAATGTGCA----------TATTCTGAGAACACTATCATCATGTTACAAGTGTTATCTTTGCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     357374 105 -    457564 cctggttctca--ggagtgacttagt-----aaatattggttggttggatgaatG-AAAAAATTTGCA----------TATTTTGAGAACACTGTCATCATGTTACAAGTGTTATCTTTGCTT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               199225 100 + 123392446 cccggcatgca--ggagtaacttagt-----aaata----ctgattggatgaatA-TGCAAATTTGCA----------TG-TTTGAGAACACTGTTATCATTTTACAAGTGCTATCTTTGCCT
i micMur3.chr6             I 24 C 0
s proCoq1.NW_012152574v1     659952 101 +    730504 CCCGGCATGCA--GGAGTAACTTAGT-----AAATA----CTGATTGGGGGAATA-GGCAGATTCGCA----------TGTTTTGAGAACACTGTTATCATTTTACAAGTGCTATCTTTGCCT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           167235  95 +  18854210 CCTGGCCAATA--GGAGTAATTTAGT-----AAATA----C-GGTTGAGTGAATA-GGCAAATTCACG----------TATTTTGAGAACACTG---TCATTTTACAAGTGTCATATTTGA--
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26269939  80 +  26524999 CCTGGC------------AACTCAGT-----AAATA----CTGGCTTGGTGAACA-GGAACATTTATG----------AAT-----------CATTGTCATGTTATACGTATCATCTTTGCCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            92198  96 +    102524 -CCGGCATGCACCGTGGCGA-----T-----GAATA---------CGGAGGGATG---AGCACTCGCAAGGTCAGTGCTGACCTGAGGACAGTGCCATCGTGGGACAACAGTC----CAGCCT
i dasNov3.JH582591         C 0 C 0
e mm10.chr17               57979638 1288 -  94987271 I

a score=1084204.000000
s hg38.chr6_GL000254v2_alt   941119 77 +   4827813 TCATGCAGGCTATCATTTCTTCTC-----TTTACCACTGAGCTTAGTGACTCAGATCTTTCACACCTGGAAAGCA-----TAGAACC
s panTro5.chr6             29903933 77 + 175400573 TCATGCAGGCTATTATTTCTTCTC-----TTTACCACTGAGCTTAGTGACTCAGATCTTTCACACCTGGAAAGCA-----TAGAACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30137679 77 + 173848474 TCATGCAGGCTATTATTTCTTCTC-----TTTACCACTGAGCTTAGTGACTCAGATCTTTCACACCTGGAAAGCA-----TAGAACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5937319 77 +   6154872 TCATGCAGGCTATCATTTCTTCTC-----TTTACCACTGAGCTTAGTGACTCAGATCTTTCACACCTGGAAAGCA-----TAGAACC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74654280 77 + 122973662 TCATGCAGGCTATCATTTCTTCTC-----TTTACCACTGAGCTTAGTGACTCAGATCTTTCACACCTGGAAAGCA-----TAGAACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30137245 77 + 172585720 TCATGCAGGCTATCATTTCTTCTC-----TTTACCACTGAGCTTAGTGACTCAGATCTTTCACACCTGGAAAGCA-----TAGAACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29800702 77 - 170955103 TCATGCAGGCTATCATTTCTTCTC-----TTTACCACTGAGCTTAGTGACTCAGATCTTTCACACCTGGAAAGCA-----TAGAACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2846264 77 -   2996164 TCATGCAGGCTATCATTTCTTCTC-----TTTACCACTGAGCTTAGTGACTCAGATCTTTCACACCTGGAAAGCA-----TAGAACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     595051 77 +    766320 TCATGCAGGCTATTGTTTCTTCTC-----TTTACCACTGAGCTTAGTGACTCAGATCTTTCACACCTGGAAAGCA-----TAGAACC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29052169 76 -  71996105 TCATGCAGGCTATCATTTCTTCTC-----TTTACCACTGAGCTTAGTGACTCAGATCTTTCACA-CTGGAAAGCA-----TAGAACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     250374 77 +    290775 TCATGCAGGCTATCGTTTCTTCTC-----TTTACCACTGAGCTTAGTGACTCAGATCTTTCACACCTGGAAAGCA-----TAGAACC
i manLeu1.NW_012099233v1   C 0 I 6343
s colAng1.NW_012115566v1    2690116 77 -   3067355 TCATGCAGGTTATCATTTCTTCTC-----TTTACCACTGAGCTTAGTGACTCAGATCTTTCACATCTGGAAAGCA-----TAGAACC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67897 77 +    132061 TCATGCAGGCTATCATTTCTTCTC-----TTTACCACTGAGCTTAGTGACTCAGATCTTTCAAATCTGGAAGGCA-----CAGAACC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            22475 77 -    110772 TCATGCAGGCTATCATTTCTTCTC-----TTTACCACTGAGCTTAGTGACTCAGATCTTTCAAACCTGGAAGGCA-----TAGAACC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     286607 77 -   1771730 TCATGTAGGCTATCATTTCTTCTC-----TTTACCACTGAGCTTAGTGACTCAGATCTTTCAAACCTGGAAGGCA-----CAGAACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     357479 77 -    457564 TCATGCAAGCTATCATTTCTTCTC-----TTTACCACTGAGCTTAGTGACTCAGATCTTTCACACCTGGAAAGCA-----TAGAACC
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               199325 84 + 123392446 TCATATTTGCTTTCATTGCTTCTC---TTTTTACCCCTGAGCTTAGTCCTCCAGATCTTTCACACCTGAAAGGTATAGATTAGAACC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     660053 84 +    730504 TCATACAGGCTTTCATTGCTTCTC---TTTTTACCCCTGAGCTTAGTGCTCCAGATCTTTCCCACTTGGAAGGTATAGATTAGAACC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           167330 58 +  18854210 ---------------------CTC---TTTTTACCCCTGGACTTAGTGATCTGTATCTTGCATACCTGGAAGGTA-----TAGAGCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57980926 62 -  94987271 TCATCTAAGTTTTTATTGCTTTTACCTTTTTTACCCCGGAACTTTGTGACTCAGATCTTTCA-------------------------
i mm10.chr17               I 1288 C 0
s canFam3.chr35            26270019 72 +  26524999 TCAT----GATTTCATCTCTTCTC---CTGTTACC-CTGAGCTGACAGACCTAGATCTCTCCTAGCTGGAGGGTG-----CAGGA--
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            92294 70 +    102524 GCCTGCAGGCTGCGGCCTTCCCCT-----CGGACCTCTGAGCTCAGCGGC-CAGGTCT------CCTGGACAGAA-----CGGGACC
i dasNov3.JH582591         C 0 C 0

a score=3827904.000000
s hg38.chr6_GL000254v2_alt   941196 234 +   4827813 AGGGGTCAGTGAAACTAATTGTAAGCTGATCTACCTGTCCAGGGAAACCAG----ATGTTCCAGGGCCCTTAGG-------ACAGGGGGCTTGCTGAGGGAAGCCCAGCCTCTTACCCACAGATGTTAGATTCTTAAAGGTTTCCGACATAACATCCTGGTAAAGGACCCTCTGGCTGGCATCTAGACAGTCCCACTCTTCCTGGGTGAAATTCACTGCCACATCCTCAAAGGTGACTGGCTTCT
s panTro5.chr6             29904010 234 + 175400573 AGGGGTCAGTGAAACTAATTGTAAGCTGATCTACCTGTCCAGGGAAACCAG----ATGTTCCAGGGCCCTTAGG-------ACAGGGGGCTTGCTGAGGGAAGCCCAGCCTCTTACCCACAGATATTAGATTCTTAAAGGTTTCCGACATAACATCCTGGTAAAGGACCCTCTGGCTGGCATCTAGACAGTCCCACTCTTCCTGGGTGAAATTCACTGCCACATCCTCAAAGGTGACTGGCTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30137756 234 + 173848474 AGGGGTCAGTGAAACTAATTGTAAGCTGATCTACCTGTCCAGGGAAACCAG----ATGTTCCAGGGCCCTTAGG-------ACAGGGGGCTTGCTGAGGGAAGCCCAGCCTCTTACCCACAGATATTAGATTCTTAAAGGTTTCTGACATAACATCCTGGTAAAGGACCCTCTGGCTGGCATCTAGACAGTCCCACTCTTCCTGGGTGAAATTCACTGCCACATCCTCAAAGGTGACTGGCTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5937396 234 +   6154872 AGGGGTCAGTGAAACTAATTGTAAGCTGATCTACCTGTCCAGGGAAACCAG----ATGTTCCAGGGCCCTTAGG-------ACAGGGGGCTTGCTGAGGGAAGCCCAGCCTCTTACCCACAGATGTTAGATTCTTAAAGGTTTCCGACATAACATCCTGGTAAAGGACCCTCTGGCTGGCATCTAGACAGTCCCACTCTTCCTGGCTGAAATTCACTGCCACATCCTCAAAGGTGACTGGCTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74654357 234 + 122973662 AGGGGTCAGTGAAACTAATTGTAAGCTGATCTACCTGTCCAGGGAAACCAG----ATGTTCCAGAGCCCTTAGG-------ACAGGGGGCTTGCTGAGGGAAGCCCAGCCTCTTACCCACAGATGTTAAATTCTTAAAGGTTTCCGACATAACATCCTGGTAAAGGACCCTCTGGCTGGCATCTAGACAGTCCCACTCTTCCTGGGTGAAATTCACTGCCACATCCTCAAAGGTGACTGGCTTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30137322 234 + 172585720 AGGGGTCAGTGAAACTAACTGTAAGCTGATCTACCTGTCCAGGGAAACCAG----ATGTTCCAGGGCCCTTATG-------ACAGGGGGCTTGCTGAGGGAAGCCCAGCCTCTTACCCACAGATGCTAGGTTCTTAAAGATTTCCGACATAACATCCTGGTAAAGGACCCTCTGGCTGGCATCTAGACAGTCCCACTCTTCCTGGGTGAAATTCACTGCCACATCCTCAAAGGTGACTGGCTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29800779 234 - 170955103 AGGGGTCAGTGAAACTAACTGTAAGCTGATCTACCTGTCCAGGGAAACCAG----ATGTTCCAGGGCCCTTATG-------ACAGGGGGCTTGCTGAGGGAAGCCCAGCCTCTTACCCACAGATGCTAGGTTCTTAAAGATTTCCGACATAACATCCTGGTAAAGGACCCTCTGGCTGGCATCTAGACAGTCCCACTCTTCCTGGGTGAAATTCACTGCCACATCCTCAAAGGTGACTGGCTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2846341 234 -   2996164 AGGGGTCAGTGAAACTAACTGTAAGCTGATCTACCTGTCCAGGGAAACCAG----ATGTTCCAGGGCCCTTAGG-------ACAGGGGGCTTGCTGAGGGAAGCCCAGCCTCTTACCCACAGATGCTAGGTTCTTAAAGATTTCCGACATAACATCCTGGTAAAGGACCCTCTGGCTGGCATCTAGACAGTCCCACTCTTCCTGGGTGAAATTCACTGCCACATCCTCAAAGGTGACTGGCTTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     595128 234 +    766320 AGGGGTCAGTGAAACTAACTGTAAGCTGATCTACCTGTCCAGGGAAACCAG----ATGTTCCAGGGCCCTTAGG-------ACAGGGGGCTTGCTGAGGGAAGCCCAGCCTCTTACCCACAGATGCTAGGTTCTTAAAGATTTCCGACATAACATCCTGGTAAAGGACCCTCTGGCTGGCATCTAGACAGTCCCACTCTTCCTGGGTGAAATTCACTGCCACATCCTCAAAGGTGACTGGCTTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29052245 234 -  71996105 AGGGGTCAGTGAAACTAACTGTAAGCTGATCTACTTGTCCAGGGAAACCCG----ATGTTGCAGGGCCCTTAGG-------ACAGGGGGCTTGCTGAAGGAAGCCCAGCCTCTTACCCACAGATGCTAGGTTCTTAAAGATTTCCGACATAACATCCTGGTAAAGGACCCTCTGGCTGGCATCTAGACAGTCCCACTCTTCCTGGGTGAAATTCACTGCCACATCCTCAAAGGTGACTGGCTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     256794 234 +    290775 AGGGGTCAGTGAAACTAACTGTAAGCTGATCTACCTGTCCAGGGAAACCAG----ATGTTCCAGGGCCCTTAGG-------ACAGGGGGCTTGCTGAGGGAAGCCCAGCCTCTTACCCACAGATGCTAGGTTCTTAAAGATTTCCGACATAACATCCTGGTAAAGGACCCTCTGGCTGGCATCTAGACAGTCCCACTCTTCCTGGGTGAAATTCACTGCCACATCCTCAAAGGTGACTGGCTTCT
i manLeu1.NW_012099233v1   I 6343 C 0
s colAng1.NW_012115566v1    2690193 234 -   3067355 AGGGGTCAGTGAAACTAACTGTAAGCTGATCTACCTGTCCAGGGAAACCAG----ATGTTCCAGGACCCTTAGG-------ACAGGGGGCTTGCTGAGGGAAGCCCAGCCTCTTACCCACAGATGCTAGGTTCTTAAAGATTTCCGACAAAACATCCTGGTAAAGGACCCTCTGGCTGGCATCTAGACAGTCCCACTCTTCCTGGGTGAAATTCACTGCCACATCCTCAAAGGTGACTGGCTTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      67974 233 +    132061 AGGGGTCAGTGAAACTAATTGTGAGCTGATCTACCTGTCCAGGGAAAAC------ATGTTCCAGGGCCTTTAGG------AACAGGGAGCTTGCTGAGGGAAGCCCAGCCTCTTACCCACAGATGCTAGGTTCTTAAAGGTTTCCGACATAACATCCTGGTAAAGGACCCTCTGGCTGGCATCTAGACAGTCCCACTCTTCCTGGGTGAAATTCACTGCCAAATCCTCAAAGGTGACTGGCTTCT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            22552 235 -    110772 AGGGGTCAGTGAAACTAATTGTGAGCTGATATACCTGTCCAGGGAAAACAG----ATGTTCCAGGACCTTTAGG------AACAGGGGGCTTGCTGAGGGAAGCCCAGACTCTTACCTACAGATGCTAGGTTCTTAAAGGTTTCCGACATAACATCCTGGTAAAGGACCCTCTGGCTGGCATCTAGACAGTCCCACTCTTCCTGGGTGAAATTCACTGCCACATCCTCAAAGGTGACTGGCTTCT
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     286684 235 -   1771730 AGGGGTCAGTGAAACTAATTGTGAGCTGATCTACCTGTCCAGGGAAAACAG----ATGTTCCAGGGCCTTTAGG------AACAGGGGGCTTACTGAGGGAAGCCCAGCCTCTTACCCACAGATGCTAGGTTCTTAAAGGTTTCCGACATAACATCCTGGTAAAGGACCCTCTGGCTGGCATCTAGGAAGTCCCACTCTTCCTGGGTGAAATTCACTGCCACATCCTCAAAGGTGACTGGCTTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     357556 235 -    457564 AGGGGTCAGTGAAACTAATTGTGAGCTGATCTACCTGTCCAGGGAAAACAG----ACATTCCAGGGCCTTTAGG------AACAGGGGGCTTGCTGAGGGAAGCCCAGCCTCTTACCCACAGATGCTAGGTTCTTAAAGGTTTCCAACATAACATCCTGGTAAAGGACCCTCTGGCTGGCATCTAGACAGTCCCACTCTTCCTGGGTGAAATTCACTGCCACATCCTCAAAGGTGACTGGCTTCT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               199409 218 + 123392446 AGGGGCCAGTGAAACTAACTGTGAGCCAATCTCCCTGCCCAGGGAAGCTGG----ATGTTCCAGGGGC-------------ACAG----------GAGGGAAGCCCAGCCTCTTACCCACAGACTCTAGGTTCCTGAAGGTCTCTGACATGACATCCTGGTAAAGGACCCTCTGACTGGCACCGAGACATTCCCACTCTTCCTGCGAGAAATTCACTGCCACATCCTCAAAGGTGACTGGCTTCT
i micMur3.chr6             C 0 I 239
s proCoq1.NW_012152574v1     660137 216 +    730504 AGGGGCCAGTGAAACTAA--GTGAGCCAATCTATCCGCTCAGGGAAGCCAG----ATGTTCCAGGGGT-------------ACAG----------GAGGGAAGCCCAGCCTCTTACCCACAGACGCCAGGTTCCTGAAGGTTTCTGACATGACATCCTGGTAAAGGACCCTCTGACTGGCACCCAGACATTCCCACTCTTCCTGGGAGAAATTCACTGCCACATCCTCAAAGGTGACTGGCTTCT
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           167388 218 +  18854210 AGGGATGAGTGAAACTAATCGTGAGCTAATCTAACTGCCTAGGGAAACCAG----ATGTTCCAGGGGT-------------ACTT----------GAGGGAAACCCAGCCTCTTACCCACAGACGCCAGGTTCTCAAAGGTTTCTGACATGACATCCTGGTAAAGGACCCTCTGACTGACATCGAGACATGCCCACTCTTCCTGGGTGAAATTCACTGCCACATCCTCAAAGGTGACTGGCTTCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57980988 218 -  94987271 ------------GGCTGATT-----TTGGTCTATCTGAGCAGAAACACCAACAGTATTTTCTAAGGCT-ATAGG-------ACAGGGAGAATGCTGAAGGAG--TCAGTCTCTTACCGACAAATGTCAGGTTCTTGAAGGTTTCTGACATCACTTTCTGGTAAAGGGTCTTCTGTGTAGAAGTAAGATATTCCCATTCTTCCTGGGTGAAAGACACTGCCACGTCCTCATAACTGACTGGTGTCC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26270091 224 +  26524999 --GGTATAGAGTCTGTACATGTGAGCTGATGCACCTGCCCAGGGAAGCTAG----CGGTCTCAGG---CCTGGG-------AGAGG-----CGCTGAGGAAGCCCCAGCCTCTTACCCACAGACATCAGGTTTCTGAAGGTCTCAGACATAACATCCTGGTACAGAACCCTCTGACTGGCATCTAGACACATCCACTCTTCCTGAGTGAAGTTCACGGCCACATCTTCAAAGGTGATTGGCTTCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            92364 224 +    102524 AGGAGGCAGAGGAGCTAAGGGTGA--TGCTTAGCCCGCCCAGGGAAAC--G----ACG-CCCAGGGCTGTGGAGGTCCTCGGCGGGGCACTGGCTGAGGG---CCCGGTCTCCTGCCCACAGG-GAAACGTTCTCCAAGGGCTCTGACCCCACGTCC-----GACAGCGCCTCGGCTGGCGCC--AGCAGGCCCGTTCCTGCCGGGTGAAATCCACGG-CACCTCCTCAAAGGAGACCAGCTTCT
i dasNov3.JH582591         C 0 C 0

a score=311579.000000
s hg38.chr6_GL000254v2_alt   941430 20 +   4827813 GGAAGAACAGGAGAGACTCA
s panTro5.chr6             29904244 20 + 175400573 GGAAGAACAGGAGAGACTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30137990 20 + 173848474 GGAAGAACAGGAGAGACTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5937630 20 +   6154872 GGAAGAACAGGAGAGACTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74654591 20 + 122973662 GGAAGAACAGGAGAGACTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30137556 20 + 172585720 GGAAGAACAGAAGAGACTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29801013 20 - 170955103 GGAAGAACAGAAGAGACTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2846575 20 -   2996164 GGAAGAACAGGAGAGACTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     595362 20 +    766320 GGAAGAACAGGAGAGACTCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29052479 20 -  71996105 GGAAGAACAGGAGAGACTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     257028 20 +    290775 GGAAGAACAGGAGAGACTCA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2690427 20 -   3067355 GGAAGAACAGGAGAGACTCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      68207 20 +    132061 GGAAGAACAGGAGAGACTCA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            22787 20 -    110772 GGAAGAACAGGAGAGACTCA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     286919 20 -   1771730 GGAAGAACAGGAGAGGCtca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     357791 20 -    457564 GGAAGAACAGGAGGGACTCA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     660353 20 +    730504 AAAACAGCAGGAGAGACTCA
i proCoq1.NW_012152574v1   C 0 I 36
s otoGar3.GL873550           167606 20 +  18854210 AAAACAGCAGGAGAAACTCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57981206 20 -  94987271 TGGATGGCTGGGAAGACTTA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26270315 20 +  26524999 GCAAGAGCAAGAGAGACTCG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            92588 18 +    102524 --GAGAGCAGGAGAGAGGCA
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               199627 239 + 123392446 I

a score=96744.000000
s hg38.chr6_GL000254v2_alt   941450 12 +   4827813 AGAAGTTTATAT
s panTro5.chr6             29904264 12 + 175400573 AGAAGTTTATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30138010 12 + 173848474 AGAAGTTTATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5937650 12 +   6154872 AGAAGTTTATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74654611 12 + 122973662 AGAAGTTTATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30137576 12 + 172585720 AAAAGTTTACAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29801033 12 - 170955103 AAAAGTTTACAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2846595 12 -   2996164 AAAAGTTTACAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     595382 12 +    766320 AAAAGTTTACAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29052499 12 -  71996105 AAAAGTTTACAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     257048 12 +    290775 AAAAGTTTACAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2690447 12 -   3067355 AGAAGTTTATAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      68227 12 +    132061 AGAAGTTTATTT
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            22807 12 -    110772 AGAAGTTTATAT
i saiBol1.JH378388         C 0 M 4765
s cebCap1.NW_016107755v1     286939 12 -   1771730 agaagtttatat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     357811 12 -    457564 AGAAGTTCATAT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           167626 12 +  18854210 GGGAATATACAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57981226  6 -  94987271 GAATGT------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26270335  7 +  26524999 GGGAGTC-----
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            92606  9 +    102524 GGGAGACCA---
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               199627 239 + 123392446 I
e proCoq1.NW_012152574v1     660373 36 +    730504 I

a score=104764.000000
s hg38.chr6_GL000254v2_alt   941462  37 +   4827813 AAATATAT----------Atg------------------------------------------------tgtgtgt------------gtgtgtgtgtgtgtACA-AG
s panTro5.chr6             29904276  33 + 175400573 AAATATAt--------------------------------------------------------------gtgtgt------------gtgtgtgtgtgtgtACA-AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30138022  45 + 173848474 AAATATAtgt--gtgtgtgtg------------------------------------------------tgtgtgt------------gtgtgtgtgtgtgtACA-AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5937662  43 +   6154872 AAAtatat----gtatgtgtg------------------------------------------------tgtgtgt------------gtgtgcgtgtgtgtACA-AG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74654623  25 + 122973662 AAATATGT----------------------------------------------------------------------------------GTGTGTGTGTATACA-AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30137588  59 + 172585720 AAAtatatgtaggcatgtata------------------------------------------------tgtgtgcgtgtgtgtgtgtgtgtgtatgtgtgtACA-AG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29801045  59 - 170955103 AAAtatatgtaggcatgtata------------------------------------------------tgtgtgcgtgtgtgtgtgtgtgtgtatgtgtgtACA-AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2846607  57 -   2996164 AAAtatatgtaggcatgtata------------------------------------------------tgtgtgc--gtgtgtgtgtgtgtgtatgtgtgtACA-AG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     595394  47 +    766320 AAatatatgtaggtatgtata------------------------------------------------tgtgtgt------------gtgtgtatgtgtgtACA-AG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29052511  59 -  71996105 AAatatacgtaggtatgtata------------------------------------------------tgtgtgcgtgtgtacgtgtgtgtgtatgtgtgtACA-AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     257060  61 +    290775 AAATATATGTAGGTATGTATAtg----------------------------------------------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtACA-AG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2690459  55 -   3067355 AAatatatgtaggtatgtata------------------------------------------------tgtgtgc----gtgtgtgtgtgtgtatgtgtgtACA-AG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      68239  61 +    132061 CAATACATACgtgtgtgtgtggggggg------------------------------------------ggcgtgc----atgtgtgtgtgtgtgtgtgtgtACA-AG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     286951  53 -   1771730 caatatatacatgtatgtgt--------------------------------------------------gcgtgt----gtgtgtatgcatgtgtgtgtgtACA-AG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     357823 103 -    457564 CAATATATGCATGCAtgtgtgtgtgcgtgcgtgtgcgtgcacgtgtgtgtgtgtgcacgtgtatgtgcttgtgtgt----gtgtgaatgtgcgtgtgtgtgtACA-AG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           167638  21 +  18854210 ---------------------------------------------------------------------------------------CACCCACACACACACACAGAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57981232  30 -  94987271 AAATACAGA------------------------------------------------------------GACTTGA-----------------AGTGTCTGTTCA-GG
i mm10.chr17               C 0 I 221
s canFam3.chr35            26270342  10 +  26524999 -------------------------------------------------------------------------------------------------TGTATACA-AG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            92615  13 +    102524 ----------------------------------------------------------------------------------------------GGAGGAACGCA-GG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               199627 239 + 123392446 I
e proCoq1.NW_012152574v1     660373  36 +    730504 I
e saiBol1.JH378388            22819 4765 -    110772 M

a score=157266.000000
s hg38.chr6_GL000254v2_alt   941499 15 +   4827813 -ATTAACATCCAGTCT
s panTro5.chr6             29904309 15 + 175400573 -ATTAACATCCAGTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30138067 15 + 173848474 -ATTAACATCCAGTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5937705 15 +   6154872 -ATTAACATCCAGTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74654648 15 + 122973662 -ATTAACATCCAGTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30137647 15 + 172585720 -ATTAACATCCAGTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29801104 15 - 170955103 -ATTAACATCCAGTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2846664 15 -   2996164 -ATTAACATCCAGTCT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     595441 15 +    766320 -ATTAACATCCAGTCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29052570 15 -  71996105 -ATTAACATCCAGTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     257121 15 +    290775 -ATTAACATCCAGTCT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2690514 15 -   3067355 -ATTAACATCCAGTCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      68300 15 +    132061 -ATTAACATCCATTCT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     287004 15 -   1771730 -ATTAACATCCATTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     357926 15 -    457564 -ATTAACATACGTTCT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           167659 15 +  18854210 -ACTGACATCTAGTCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26270352 15 +  26524999 -ACAGACACCCAAGCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            92628 16 +    102524 GGCAGACGTCCAGCTG
i dasNov3.JH582591         C 0 C 0
e micMur3.chr6               199627 239 + 123392446 I
e mm10.chr17               57981262 221 -  94987271 I
e proCoq1.NW_012152574v1     660373 36 +    730504 I
e saiBol1.JH378388            22819 4765 -    110772 M

a score=676770.000000
s hg38.chr6_GL000254v2_alt   941514 55 +   4827813 CAAGATTCAGAGAATTAAAACCTAAGAGAAAGATAAAACCATGGAAGGAAGAGAG
s panTro5.chr6             29904324 55 + 175400573 CAAGATTCAGAGAATTAAAACCTAAGAGAAAGATAAAACCATGGAAGGAAGAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30138082 55 + 173848474 CAAGATTCAGAGAATTAAAACCTAAGAGAAAGATAAAACCATGGAAGGAAGAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5937720 55 +   6154872 CAAGATTCAGAGAATTAAAACCTAAGAGAAAGATAAAACCATGGAAGGAAGAGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74654663 55 + 122973662 CAAGATTCAGAGAATTAAAACCTAAGAGAAAGATAAAACCATGGAAGGAAGAGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30137662 51 + 172585720 CAAGATTCAGAGAATTAAAACCTAAGAGAAAGATAAAACCATGGAAGG----GAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29801119 55 - 170955103 CAAGATTCAGAGAATTAAAACCTAAGAGAAAGATAAAACCATGGAAGGAAGAGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2846679 55 -   2996164 CAAGATTCAGAGAATTAAAACCTAAGAGAAAGATAAAACCATGGAAGGAAGAGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     595456 55 +    766320 CAAGATTCAGAGAATTAAAACCTAAGAGAAAGATAAAACCATGGAAGGAAGAGAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29052585 55 -  71996105 CAAGATTCAGAGAATTAAAACCTAAGAGAAAGATAAAGCCATGGAAGGAAGAGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     257136 55 +    290775 CAAGATTCAGAGAATTAAAACCTAAGAGAAAGATAAAACCATGGAAGGAAGAGAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2690529 55 -   3067355 CAAGATTCAGAGAATTAAAACCTAACAGAAAGATAAAACCATGGAAGGAAGAGAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      68315 55 +    132061 CAAAATTGAGAGAATTAAAACCTAAGAGAAAGATAAACCCATGGAAGGAAGACAG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     287019 55 -   1771730 CAAAATTCAGAGAATTAAAAACTAAGAGAAAGATAAACCCATGGGAGGAAGAGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     357941 55 -    457564 CAAAATTCAGAGAATTAAAACCTAAGAGAAAGCTAAACCCATGGAAGGAATAGAG
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     660409 55 +    730504 CAAGGTTCAGAGAACTGAAACCTAAGAAAATGATAAAACCATGGAAGCAAGAGAG
i proCoq1.NW_012152574v1   I 36 C 0
s otoGar3.GL873550           167674 55 +  18854210 CAAGATTGTGAGCACTGAAACCTAAGAGAATGATAAAAGCACAGAAGGAAGAGGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26270367 47 +  26524999 CAAGATT--------TACAAACCGGGAGAGAACTAAAACCATGGAAGGCAGGGAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH582591            92644 48 +    102524 -------CAAGGGACGGAAGGCCAAGAGGAAAAGGAAGCCATGGGAGGGAGAGAG
i dasNov3.JH582591         C 0 N 0
e micMur3.chr6               199627 239 + 123392446 I
e mm10.chr17               57981262 221 -  94987271 I
e saiBol1.JH378388            22819 4765 -    110772 M

a score=362911.000000
s hg38.chr6_GL000254v2_alt   941569 32 +   4827813 -AAATATTAAAAGACAGACACAAGGCCAGCAAC
s panTro5.chr6             29904379 32 + 175400573 -AAATATTAAAAGACAGACACAAGGCCAGCAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30138137 32 + 173848474 -AAATATTAAAAGACAGACACAAGGCCAGCAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5937775 32 +   6154872 -AAATATTAAAAGACAGACACAAGGCCAGCAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74654718 32 + 122973662 -AAATATTAAAAGACAGACACAAGGCCAGCAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30137713 32 + 172585720 -AAATATTAAAGGAGAGACACAAGGCCAGCAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29801174 32 - 170955103 -AAATATTAAAAGAGAGACACAAGGCCAGCAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2846734 32 -   2996164 -AATTATTAAAAGAGAGACACAAGGCCAGCAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     595511 32 +    766320 -AAATATTAAAAGAGAGACACAAGGCCAGCAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29052640 32 -  71996105 -AAATATTAAAAGAGAGACACAAGGCCAGCAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     257191 32 +    290775 -AAATATTAAAAGAGAGACACAAGGCCAGCAAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2690584 32 -   3067355 -AAATATTAAAAGAGAGACACAAGGCCAGCAAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      68370 32 +    132061 -AAATATGAAAAGACAGACACAAGGCCAGTAAC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     287074 32 -   1771730 -AAATATGAAAAGACAGCCACAAGGCCAGTAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     357996 33 -    457564 AAAATATAAAAAGACAGACACAAGGCCAGTAAC
i aotNan1.NW_018509740v1   C 0 I 12
s proCoq1.NW_012152574v1     660464 32 +    730504 -AAATATGAAAAGACACACAAAAAGCCAGCAAC
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           167729 32 +  18854210 -AAATATGCTAAGACAGACATAAAACTAGCAAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26270414 32 +  26524999 -GAATAGGAAAACACAGGTGCAAAGTCTGCAAT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               199627 239 + 123392446 I
e mm10.chr17               57981262 221 -  94987271 I
e saiBol1.JH378388            22819 4765 -    110772 M

a score=100534.000000
s hg38.chr6_GL000254v2_alt   941601 12 +   4827813 --TGTGAAGTATAg
s panTro5.chr6             29904411 12 + 175400573 --TGTGAAGTATAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30138169 12 + 173848474 --TGTGAAGTATAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5937807 12 +   6154872 --TGTGAAGTATAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74654750 12 + 122973662 --TGTGAACTATAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30137745 12 + 172585720 --TGTTAAGTATAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29801206 12 - 170955103 --TGTTAAGTATAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2846766 12 -   2996164 --TGTGAAGTATAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     595543 12 +    766320 --TGTGAAGTATAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29052672 12 -  71996105 --TGTGAAGTATAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     257223 12 +    290775 --TGTGAAGTATAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2690616 12 -   3067355 --TGTGAAGTATAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      68402 12 +    132061 --TGGGTAGTATAG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     287106 12 -   1771730 --TGTGTAGTATag
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012152574v1     660496 12 +    730504 --CATGAAGTATGG
i proCoq1.NW_012152574v1   C 0 C 0
s otoGar3.GL873550           167761 12 +  18854210 --TATGAAGTATAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26270446 12 +  26524999 GTTATTCCATAC--
i canFam3.chr35            C 0 C 0
e micMur3.chr6               199627 239 + 123392446 I
e mm10.chr17               57981262 221 -  94987271 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     358029 12 -    457564 I

a score=107760.000000
s hg38.chr6_GL000254v2_alt   941613 10 +   4827813 aaaggaaagg
s panTro5.chr6             29904423 10 + 175400573 AAAGGAAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30138181 10 + 173848474 AAAGGAAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5937819 10 +   6154872 AAAGGAAAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74654762 10 + 122973662 AAAGGAAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30137757 10 + 172585720 AAAGGAAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29801218 10 - 170955103 AAAGGAAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2846778 10 -   2996164 AAAGGAAAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     595555 10 +    766320 AAAGGAAAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29052684 10 -  71996105 AAAGGAAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     257235 10 +    290775 AAAGGAAAGG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2690628 10 -   3067355 AAAGGAAAGG
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     287118 10 -   1771730 aaaggaaagg
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012152574v1     660508 10 +    730504 AAAGGAAAGG
i proCoq1.NW_012152574v1   C 0 I 80
s otoGar3.GL873550           167773 10 +  18854210 AAAGGAAGAA
i otoGar3.GL873550         C 0 I 100
s canFam3.chr35            26270458 10 +  26524999 AAAGGAAAGG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               199627 239 + 123392446 I
e mm10.chr17               57981262 221 -  94987271 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     358029 12 -    457564 I
e calJac3.chrUn_GL286223      68414  0 +    132061 C

a score=9555.000000
s hg38.chr6_GL000254v2_alt   941623 1 +   4827813 a
s panTro5.chr6             29904433 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30138191 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5937829 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74654772 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30137767 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29801228 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2846788 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     595565 1 +    766320 A
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29052694 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     257245 1 +    290775 A
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2690638 1 -   3067355 A
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     287128 1 -   1771730 a
i cebCap1.NW_016107755v1   C 0 I 37
s otoGar3.GL873550           167883 1 +  18854210 A
i otoGar3.GL873550         I 100 C 0
s canFam3.chr35            26270468 1 +  26524999 A
i canFam3.chr35            C 0 C 0
e micMur3.chr6               199627 239 + 123392446 I
e mm10.chr17               57981262 221 -  94987271 I
e proCoq1.NW_012152574v1     660518 80 +    730504 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     358029 12 -    457564 I
e calJac3.chrUn_GL286223      68414 0 +    132061 C

a score=1324097.000000
s hg38.chr6_GL000254v2_alt   941624 223 +   4827813 ggccggacgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcagatca--cgaggtcgggagttcgagaccagcctgaccaatatggtgaaacctggtctctgctaaaaacacaaaaattagctgggcatggtggcgcatgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgagcccgggaggcagaggtagcag
s panTro5.chr6             29904434 223 + 175400573 ggccggacgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcagatca--cgaggtcaggagttcgagaccagcctgaccaatatggtgaaacctggtctctgctaaaaacacaaaaattagctgggcatggtggtgcatgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgagcccgggaggcagaggtagcag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30138192 223 + 173848474 ggccggacgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcagatca--cgaggtcaggagttcgagaccagcctgaccaatatggtgaaacctggtctctgctaaaaacacaaaaattagctgggcatggtggtgcatgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgagcccgggaggcagaggtagcag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5937830 222 +   6154872 ggccggacgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcagatca--caaggtcaggagttcgagaccagcctgaccaatatggtgaaacctggtctctgctaaaaacacaaaaattagctgggcgtggtggcgcctgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgagccc-ggaggcagaggtagcag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74654773 223 + 122973662 ggctgggcgtggtgcctcacgcctgtaatcccagcactttgggaggctgaggcaggcagatca--tgaggtcaggagtttgagaccagcctgaccaacatggtgaaacctggtctctactaaaaattcaaaaattagccgggcatggtggcgcatgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgagcctgggaggcagaggttgcag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30137768 223 + 172585720 ggccggatgtggtggctcatgcctgtaatcccagcactttgtgaggctgaggcaggcagatca--tgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccaggtatctactaaaaatacaaaaattagctgggtgtggtgatgcatgcctgtaatcccagctactcaggaggccgaggcaggagaattacttgagcctgggaggcagaggttgcag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29801229 223 - 170955103 ggccggatgtggtggctcatgcctgtaatcccagcactttgtgaggctgaggcaggcagatca--tgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccaggtatctactaaaaatacaaaaattagctgggtgtggtgatgcatgcctgtaatcccagctactcaggaggccgaggcaggagaattacttgagcctgggaggcagaggttgcag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2846789 223 -   2996164 ggccggatgtggtggctcatgcctgtaatcccagcactttgtgaggctgaggcaggcagatca--tgaggtcaggagttcgagaccagcctgatcaacatggtgaaaccaggtatctactaaaaatataaaaattagccgggtgtggtgatgcatgcctataatcccagctactcaggaggccgaggcaggagaattacttgagcctgggaggcagaggttgcag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     595566 223 +    766320 ggccagatgtggtggctcatgcctgtaatcccagcactttgtgaggctgaggcaggcagatca--tgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccaggtatctactaaaaatacaaaaattagccgggtatggtgatgtatgcctgtaatcccagctactcaggaggttgaggcaggagaattacttgagctcgggaggcagaggttgcat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29052695 223 -  71996105 ggccggatgtggtggctcatgcctgtaatcccagcactttgtgaggctgaggcaggcagatca--tgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccaggtatctactaaaaatacaaaaattagccgggtgtggtgatgcatgcctgtaatcccagctactcaggaggctgaggcaggagaattacttgagcccgggaggcagaggttgcag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     257246 223 +    290775 ggccagatgtggtggctcatgcctgtaatcccagcactttgtgaggctgaggcaggcagatca--tgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccaggtatctactaaaaatacaaaaattagccgggtatggtgatgtatgcctgtaatcccagctactcaggaggctgaggcaggagaattacttgagcccgggaggcagaggttgcag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2690639 223 -   3067355 ggccggatgtggtggttcatgcctgtaatcccagcactttgcaaggctgaggcaggcagatca--tgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccaggtatctactaaaaatacaaaaattagccgggtgtggtgacgcatgcctataatcccagctactcaggaggctgaggcaggagaattacttgagaccgggaggcagaggttgcag
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           167884 214 +  18854210 ggctgggtgtggtggctcacacctacaatccaagcactctgggaggccaaagtaggtagatcacttgagctcacaagtttgagaccagcctgagc--tacggcatgacctcatttct---------aaaagaaatagccaggcattgtggcaggtacctgtagtcccagcttcttgggaggctgacgcaagagaatcacttgagcccacgagtttgaggttgctg
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26270469  38 +  26524999 --------------------------------------------------------------------------------AGGACCGA-----------------------------------------------------------------------------------------------GAGGCAGGAAGAGATGATGAGCATGGGGGC------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               199627 239 + 123392446 I
e mm10.chr17               57981262 221 -  94987271 I
e proCoq1.NW_012152574v1     660518  80 +    730504 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     358029  12 -    457564 I
e cebCap1.NW_016107755v1     287129  37 -   1771730 I
e calJac3.chrUn_GL286223      68414   0 +    132061 C

a score=331575.000000
s hg38.chr6_GL000254v2_alt   941847 82 +   4827813 tgagccaagatcgcgccaccgcactccagcctgggtgacagagcgaga-ctccgtctcaaaaaaaaaaaaaagaaaaaaaaaa
s panTro5.chr6             29904657 71 + 175400573 tgagccaagatcgcgccactgcactccagcctgggtgacacagcgaga-ctccgtctcaaaaaaaaaaaaaa-----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30138415 71 + 173848474 tgagccaagatcgcgccactgcactccagcctgggtgacacagcgaga-ctccgtctcaaaaaaaaaaaaaa-----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5938052 72 +   6154872 tgagccaagatcgcgccactgcactccagcctgggtgacagagcgaga-ctccgtctcaaaaaaaaaaaaaa----------a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74654996 72 + 122973662 tgagccaagatcatgccactgcactccagcctgggtgacagagcgaga-ttccgtctcaaaaaaaaaaaaaa----------a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30137991 66 + 172585720 tgagccaagatcacgccactgcactctagcctgggtgacagagtaaga-ctctgtctc-----aaaaaaaaa-----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29801452 66 - 170955103 tgagccaagatcacgccactgcactctagcctgggtgacagagtaaga-ctctgtctc-----aaaaaaaaa-----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2847012 67 -   2996164 tgagccaagatcacgccactgcactccagcctgggtgacagagcaaga-ctctgtctc----aaaaaaaaaa-----------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     595789 65 +    766320 tgagccaagatcacgccactgcactccagcctgggtgacagagcaaga-cgctgtctc------aaaaaaaa-----------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29052918 65 -  71996105 tgagccaagatcacgccactgcactccagcctgggtgacagagcaaga-ctctgtctc------aaaaaaaa-----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     257469 65 +    290775 tgagccaagatcacgccactgcactccagcctgggtgacagagcaaga-cgctgtctc------aaaaaaaa-----------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2690862 65 -   3067355 tgagccaagatcacgtcactgcactccagcctgggtgacagagcaaga-ctctgtctc------aaaaaaaa-----------
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           168098 69 +  18854210 tgagctgtga---caccacagcacttcactgagggcaacaaagtgagatttttgtctcaaaaaaaaaaaaaa-----------
i otoGar3.GL873550         C 0 I 11
s mm10.chr17               57981483 39 -  94987271 tgaggcactagcctgctcctggtcaccagcttaaataaa--------------------------------------------
i mm10.chr17               I 221 C 0
s canFam3.chr35            26270507 31 +  26524999 -------------TGCCATTGCAC--CAACTTTGGGAA-----------GTCCTTCC--------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               199627 239 + 123392446 I
e proCoq1.NW_012152574v1     660518 80 +    730504 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     358029 12 -    457564 I
e cebCap1.NW_016107755v1     287129 37 -   1771730 I
e calJac3.chrUn_GL286223      68414  0 +    132061 C

a score=14155.000000
s hg38.chr6_GL000254v2_alt   941929 4 +   4827813 aaag
s panTro5.chr6             29904728 2 + 175400573 --ag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30138486 2 + 173848474 --ag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5938124 4 +   6154872 aaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74655068 4 + 122973662 aaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30138057 2 + 172585720 --ag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29801518 2 - 170955103 --ag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2847079 2 -   2996164 --ag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     595854 2 +    766320 --ag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29052983 2 -  71996105 --ag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     257534 2 +    290775 --ag
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2690927 2 -   3067355 --ag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      68414 4 +    132061 AAAG
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           168178 3 +  18854210 -GAG
i otoGar3.GL873550         I 11 I 279
s mm10.chr17               57981522 4 -  94987271 ggag
i mm10.chr17               C 0 C 0
e micMur3.chr6               199627 239 + 123392446 I
e proCoq1.NW_012152574v1     660518 80 +    730504 I
e canFam3.chr35            26270538 0 +  26524999 C
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     358029 12 -    457564 I
e cebCap1.NW_016107755v1     287129 37 -   1771730 I

a score=9100.000000
s hg38.chr6_GL000254v2_alt   941933 1 +   4827813 g
s panTro5.chr6             29904730 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30138488 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5938128 1 +   6154872 g
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74655072 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30138059 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29801520 1 - 170955103 g
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2847081 1 -   2996164 g
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     595856 1 +    766320 g
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29052985 1 -  71996105 g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     257536 1 +    290775 g
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2690929 1 -   3067355 g
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      68418 1 +    132061 G
i calJac3.chrUn_GL286223   C 0 C 0
s mm10.chr17               57981526 1 -  94987271 g
i mm10.chr17               C 0 C 0
e micMur3.chr6               199627 239 + 123392446 I
e proCoq1.NW_012152574v1     660518 80 +    730504 I
e canFam3.chr35            26270538 0 +  26524999 C
e saiBol1.JH378388            22819 4765 -    110772 M
e otoGar3.GL873550           168181 279 +  18854210 I
e aotNan1.NW_018509740v1     358029 12 -    457564 I
e cebCap1.NW_016107755v1     287129 37 -   1771730 I

a score=352101.000000
s hg38.chr6_GL000254v2_alt   941934 62 +   4827813 aaaggaaagatgaagagaaaggGAGAAAGATAA-GATGTGGGGGA--GAGGAAAGAGGATATGCA
s panTro5.chr6             29904731 62 + 175400573 aaaggaaaGATGAAGAGAAAGGGAGAAAGATAA-GATGTGGGGGA--GAGGAAAGAGGATATGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30138489 61 + 173848474 -aaggaaaGATGAAGAGAAAGGGAGAAAGATAA-GATATGGGGGA--GAGGAAAGAGGATATGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5938129 62 +   6154872 aaaggaaaGATGAAGAGAAAGGGAGAAAGATAA-GACGTGGGGGA--GAGGAAAGAGGATATGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74655073 54 + 122973662 aaaggaaaGATGAAGAGAAAGGGAGAAAGATAA-GATGTGGGAGA--GAGGAAAGAG--------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30138060 54 + 172585720 aaacgaaagataaagagaaaGGGAGAAAGATAA-GATGTGGGGGA--GAGGAAAGAG--------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29801521 54 - 170955103 aaacgaaagataaagagaaaGGGAGAAAGATAA-GATGTGGGGGA--GAGGAAAGAG--------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2847082 54 -   2996164 aaaTGAAAGATGAAGAGAAAGGGAGAAAGATAA-GATGTGGGGGA--GAGGAAAGAG--------
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     595857 52 +    766320 aaaTGAAAGATGAAGAGAAA--GAGAAAGATAA-GATGTGGGGGA--GAGGAAAGAG--------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29052986 54 -  71996105 aaaTGAAAGATGAAGAGAAAGGGAGAAAGATAA-GACGTCGGGGA--GAGGAAAGAG--------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     257537 54 +    290775 aaaTgaaagatgaagagaaagagagaaagataa-gatgtggggga--gaggaaagag--------
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2690930 54 -   3067355 aaacaaaaGATGAAGAGAAAAGGAGAAAGATAA-GATGTGGGGGA--GAGGAAAGAG--------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      68419 59 +    132061 AAAGGAAAGATGAAGAGAAAGGGAGACAGAT------GTGGGGGGCTGGGGAAGGAGGATACGCA
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     358041 57 -    457564 AAAGGAAAGATGAAGAGAAAGGGAGAAAGAT------GTGGGGGA--GAGGAAGGAGGATATGCA
i aotNan1.NW_018509740v1   I 12 C 0
s mm10.chr17               57981527 41 -  94987271 -----------ggaggagaggggagaggggaga-g----gggaga--ggggagagagga------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26270538 39 +  26524999 -------AGATG---------GGCTAGGGGTGGTGTTGGGGGTAG--GGGGAGTGTG--------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               199627 239 + 123392446 I
e proCoq1.NW_012152574v1     660518 80 +    730504 I
e saiBol1.JH378388            22819 4765 -    110772 M
e otoGar3.GL873550           168181 279 +  18854210 I
e cebCap1.NW_016107755v1     287129 37 -   1771730 I

a score=334756.000000
s hg38.chr6_GL000254v2_alt   941996 43 +   4827813 GATATGCAGAATATAAACAGGAAAGCAAAGCGAAGGAAAAAAT
s panTro5.chr6             29904793 43 + 175400573 GATATGCAGAATATAAACAGGAAAGCAAAGCGAAGGAAAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30138550 43 + 173848474 GATATGCAGAATATAAACAGGAAAGCAAAGCGAAGGAAAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5938191 43 +   6154872 GATATGCAGAATATAAACAGGAAAGCAAAGCAAAGGAAAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74655127 43 + 122973662 GATATGCAGAATAGAAATAGGAAAGCAAAGCAAAAGAAAAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30138114 43 + 172585720 GATATGCAGAATATAAATAGGAAAGCAAAGCAAAAGAAAAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29801575 43 - 170955103 GATATGCAGAATATAAATAGGAAAGCAAAGCAAAAGAAAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2847136 43 -   2996164 GATATGCAGAATACAAATAGGAAAGCAAAGCAAAAGAAAAAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     595909 43 +    766320 GATATGCAGAATACAAATAGGAAAGCAAAGCAAAAGAAAAAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29053040 43 -  71996105 GATATGCAGAATATAAATAGGAAAGCAAAGCAAAAGAAAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     257591 43 +    290775 aATATGCAGAATACAAATAGGAAAGCAAAGCAAAAGAAAAAAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2690984 43 -   3067355 GATATGCAGAATACAAATAGGAAACCAAAGCAAAAGAAAAAAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      68478 35 +    132061 --------GAATATAGATAGGAAAGCAAAGCAAAGGAAAAAAT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     287166 43 -   1771730 GATATACAGAATATAAATAGGAAAGCAAAGCAAAGGAGAAAAT
i cebCap1.NW_016107755v1   I 37 C 0
s aotNan1.NW_018509740v1     358098 34 -    457564 --------GAATATAAATAGGAAAGCAAAGCAAAGGA-AAAAT
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57981568 25 -  94987271 -----------------ggggaggggaggggaggggagagga-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26270577 17 +  26524999 --------------------------GAGGCTGAGAAAAGCCT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               199627 239 + 123392446 I
e proCoq1.NW_012152574v1     660518 80 +    730504 I
e saiBol1.JH378388            22819 4765 -    110772 M
e otoGar3.GL873550           168181 279 +  18854210 I

a score=331994.000000
s hg38.chr6_GL000254v2_alt   942039 34 +   4827813 GCTGCCACTC-TAACAAATTTCAGGAAGTACTCCA
s panTro5.chr6             29904836 34 + 175400573 GCTGCCACTC-TGAAAAATTTCAGGAAGTACTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30138593 34 + 173848474 GCTGCCACTC-TGAAAAATTTCAGGAAGTACTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5938234 34 +   6154872 GCTGCCACTC-TAACAAATTTCAGGGAGTACTCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74655170 34 + 122973662 GCTGCCACTC-TAACAAATTTCAGGAAGTACTCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30138157 34 + 172585720 GCTGCCACTC-TAACAAATTTTAGGAAGTACCACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29801618 34 - 170955103 GCTGCCACTC-TAACAAATTTTAGGAAGTACCACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2847179 34 -   2996164 GCTGCCACTC-TAACAAATTTTAGGAAGTACCACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     595952 34 +    766320 GCTGCCACTC-TAACAAATTTCAGGAAGTACCACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29053083 34 -  71996105 GCTGCCACTC-TAACAAATTTTAGGAAGTACCACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     257634 34 +    290775 GCTGCCACTC-TAACAAATTTCAGGAAGTACCACA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2691027 35 -   3067355 GCTGCCACTCTTAACAAATTTCAGGAAGTACCACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      68513 34 +    132061 GCTGCCACTC-TAACAAATTTCAGAAAGCACTCCG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     287209 34 -   1771730 GCTGCCACCC-TAACAAATTTCAGAAAGTGCTCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     358132 34 -    457564 GCTGCCACTC-TAACAAATTTCAGAAAGTACTCCG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               199866 34 + 123392446 GCTGCCACTC-TGACAAGTTTCAGGAAGTGCTCCA
i micMur3.chr6             I 239 C 0
s proCoq1.NW_012152574v1     660598 34 +    730504 GCTGCCACTC-TGACAAGTTTCAGGGAGTGCTCCA
i proCoq1.NW_012152574v1   I 80 C 0
s mm10.chr17               57981593  5 -  94987271 -------gCC-TA----------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26270594 10 +  26524999 GCAGCCGCTT-------------------------
i canFam3.chr35            C 0 C 0
e saiBol1.JH378388            22819 4765 -    110772 M
e otoGar3.GL873550           168181 279 +  18854210 I

a score=784657.000000
s hg38.chr6_GL000254v2_alt   942073 66 +   4827813 TGAAGGATGCCAGGATGGTGCGGGAGATGGAGAAAG-GTCTTGCAGCTCCTTTTTCTGGATGTCGTT
s panTro5.chr6             29904870 66 + 175400573 TGAAGGATGCCAGGATGGTGCGGGAGATGGAGAAAG-GTCTTGCAGCTCCTTTTTCTGGATGTCGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30138627 66 + 173848474 TGAAGGATGCCAGGATGGTGCGGGAGATGGAGAAAG-GTCTTGCAGCTCCTTTTTCTGGATGTCGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5938268 66 +   6154872 TGAAGGATGCCAGGATGGTGCGGGAGATGGAGAAAG-GTCTTGCAGCTCCTTTTTCTGGATGTCGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74655204 66 + 122973662 TGAAGGATGCCAGGGTGGTGAGGGAGATGGAGAAAG-GTCTTGTAGCTCCTTTTTCTGGATGTCGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30138191 66 + 172585720 TGAAGGATGCCAGGGTGGTGCGGGAGATGAAGAAAG-GTTTTGCAGCTCCTTTTTCTGGATGTCGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29801652 66 - 170955103 TGAAGGATGCCAGGGTGGTGCGGGAGATGAAGAAAG-GTTTTGCAGCTCCTTTTTCTGGATGTCGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2847213 66 -   2996164 TGAAGGATGCCAGGGTGGTGCGGGAGATGGAGAAAG-GTTTTGCGGCTCCTTTTTCTGGATGTCGTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     595986 66 +    766320 TGAAGGATGCCAGGGTGGTGCGGGAGATGGAGAAAG-GTTTTGCGGCTCCTTTTTCTGGATGTCGTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29053117 66 -  71996105 TGAAGGATGCCAGGGTGGTGCGGGAGATGGAGAAAG-GTTTTGCGGCTCCTTTTTCTGGATGTCGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     257668 66 +    290775 TGAAGGATGCCAGGGTGGTGCGGGAGATGGAGAAAG-GTTTTGCGGCTCCTTTTTCTGGATGTCGTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2691062 66 -   3067355 TGAAGGATGCCAGGGTGGTGCGGGAGATGGAGAAAG-GTTTTGAGGCTCCTTTCTCTGGATGTCGTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      68547 66 +    132061 TGAAGGCTGCCAGGGTGTTGTGGGAGATGGAGAAAC-GTCTTGCAGCTCCATTTTCTGGATGTCATT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     287243 67 -   1771730 TGAAGGATGCCAGGGTGGTGCGGGAGATGGAGAAAAGGTCTTGCAGCTCCGTTTTCTGGATGTCGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     358166 66 -    457564 TGAAGGATGCCAGAGTGGTGCAGGAGATGGAGAAAG-GTCTTGCAGCTCCATTTTCTGGATGTCGTT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               199900 65 + 123392446 CAGAGGATGCC-GGGTGGCATGGGAGATGGAAAAAG-GTCTTGCGGCTCCTCTTCCTGGGTGCTGTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012152574v1     660632 66 +    730504 CCGAGGATGCCAGGGAGGCACGGGAGGTGGAAAAAG-GGCTTGCGTCTCCTTTTCCTGGGTGTTGTT
i proCoq1.NW_012152574v1   C 0 I 92
s otoGar3.GL873550           168460 65 +  18854210 GAAAGCACACTAGGCTGGCATGGGAAATGTAGAAA--GTCTGGTAGCTCCTTTTTCTGGGTGCTGTC
i otoGar3.GL873550         I 279 C 0
s mm10.chr17               57981598 59 -  94987271 TGAAGGATTCCAAGGTGGTATGGGAGTTAGAG-----ATCTTGCAATTCCTTTTTTC---TGTTGTT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26270604 25 +  26524999 ------ATCCCAGGT----------------------GTTGTTCAGCT--------TAGAA------
i canFam3.chr35            C 0 C 0
e saiBol1.JH378388            22819 4765 -    110772 M

a score=1259136.000000
s hg38.chr6_GL000254v2_alt   942139 116 +   4827813 CAGTCTGGAACAATCTGAGATTTCATTTGACCTGCAGGCAGG-----------AGTATGTATGA------AAGAGCTCCTGGAGTCCA--------------GGACC----------------TGGACCCCACC-----TCTCTCTAGCTTAGTCTCCTCACCTTCTT
s panTro5.chr6             29904936 116 + 175400573 CAGTCTGGAACAATCTGAGATTTCATTTGACCTGCAGGCAGG-----------AGTATGTATGA------AAGAGCTTCTGGAGTCCA--------------GGACC----------------TGGACCCCACC-----TCTCTCTAGCTTAGTCTCCTCACCTTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30138693 116 + 173848474 CAGTCTGGAACAATCTGAGATTTCATTTGACCTGCAGGCAGG-----------AGTATGTATGA------AAGAGCTTCTGGAGTCCA--------------GGACC----------------TGGACCCCACC-----TCTCTCTAGCTTAGTCTCCTCACCTTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5938334 116 +   6154872 CAGTCTGGAACAATCTGAGATTTCATTTGACCTGCAGGCAGG-----------AGTATGCATGA------AAGAGCTCCTGGAGTCCA--------------GGACC----------------TGGACCCCACC-----TCTCTCTAGCTTAGTCTCCTCACCTTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74655270 116 + 122973662 CAGTCTGGAACAATCTGAGATTTCATTTGACCTGCAGGCAGG-----------AGCATGCATGA------AAGGGCTCCTGGAGTCCA--------------GGACC----------------TGGACCCCACC-----TCTCTCTAGCTTAGTCTCCTCACCTTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30138257 116 + 172585720 CAGTCTGGAACAATCTGAGATTTCATTTGACCTGCAGGCAGG-----------AGCATGCATGA------AAGAGCTCCTGGAGTCTA--------------GGACC----------------TGGACCCCACC-----TCTCTCTAGCTTAGTCTCCTCACCTTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29801718 116 - 170955103 CAGTCTGGAACAATCTGAGATTTCATTTGACCTGCAGGCAGG-----------AGCATGCATGA------AAGAGCTCCTGGAGTCTA--------------GGACC----------------TGGACCCCACC-----TCTCTCTAGCTTAGTCTCCTCACCTTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2847279 116 -   2996164 CAGTGTGGAACAATCTGAGATTTCATTTGACCTGCAGGCAGG-----------AGCATGCATGA------AAGAGCTCCTGGAGTCTA--------------GGACC----------------TGGACCCCACC-----TCTCTCTAGCTTAGTCTCCTCACCTTCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     596052 116 +    766320 CAGTCTAGAACAATCTGAGATTTCATTTGACCTGCAGGCAGG-----------AGCATGCATGA------AAGAGCTCCTGGAGTCTA--------------GGACC----------------TGGACCCCACC-----TCTCTCTAGCTTAGTCTCCTCACCTTCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29053183 116 -  71996105 CAGTCTAGAACAATCTGAGATTTCATTTGACCTGCAGGCAGG-----------AGCATGCATGA------AAGAGCTCCTGGAGTCTA--------------GGACC----------------TGGACCCCACC-----TCTCTCTAGCTTAGTCTCCTCACCTTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     257734 116 +    290775 CAGTCTAGAACAATCTGAGATTTCATTTGACCTGCAGGCAGC-----------AGCATGCATGA------AAGTGCTCCTGGAGTCTA--------------GGACC----------------TGGACCCCACC-----TCTCTCTAGCTTAGTCTCCTCACCTTCTT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2691128 116 -   3067355 CAGTCTGGAACAATCTGAGATTTCATTTGACCTGCAGGCAGG-----------AGCATGCATGA------AAGAGCTCCTGGAGTCCA--------------GGACC----------------CGGACCCCACC-----TCTCTCTAGCTTAGTCTCCTCACCTTCTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      68613 116 +    132061 CAGCCTGGAACAATCTGAGATTTCGTTTCACCTGCAGGCAGG-----------AGCATGCATGA------AAGAGTTCCTGGCGTCCA--------------GGACC----------------TGGACCCCACC-----TCTCTCTAGCTTGGTGTCCTCACCTTCTT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     287310 114 -   1771730 CAGCCTGGAACAATC--AGATTTCATTTAACCTGCAAGCAGG-----------AGCATGCATGA------AAGAGCTCCTGGAGTCCA--------------GGACC----------------TGGACCCCACC-----TCTCTCTAGCTTAGTGTCCTCACCTTCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     358232 116 -    457564 CAGCCTGGAACGATCTGAGATTTCATTTAACCTGCAGACAGA-----------AGCATGCATGA------AAGAGCTCCTGGAGTCTA--------------GGACT----------------TGGACCCCACC-----TCTCTCTAGCTTAGTGTCCTCACCTTCTT
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               199965 107 + 123392446 CAGCCAGCAATAACCTGAGATTTCATCTGGCCTGCAGGCAGG-----------GGAATGGATGG------AAGCGCTCCTGGAGTCCA--------------GG----------------------TTCCTACC-----TGTCTCTAGCTTGG-CCCCTCACCTGC--
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           168525 113 +  18854210 CACCCTGGAATAATCTGAGAATTCA-CTGACCCGCAGGCAGA-----------GGAATGGATGG------AACAGCTCCTGGAGTCTA--------------GGCCC----------------TGCTCCCTCCC-----CATCTCTAGCTTGGTCTCCTCACCTTC--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57981657 168 -  94987271 TGGCCTGGGACAATCTGGGGTTCTACCAGATCCACAGGTGGGTAAAAGACCTCAACATGAACCAAGGTTCAAGAGAATCTAGGGCCTGCCACTTCCTTTACCGGACCATCTCCTTTCTGCTGTTGGATTTCACTAGTAATCTCTCCATGTTAAGtcctctattttgct
i mm10.chr17               C 0 I 1
s canFam3.chr35            26270629  81 +  26524999 CAGTTCGGAAC----------TCCATGTGACC-ACAGACTGC-----------AGCA--GACGA------AAGGACTC---GGGGTCA--------------GGACT----------------GGTGCTCCCTC---------------------TCCTCACCTG---
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     660698  92 +    730504 I
e saiBol1.JH378388            22819 4765 -    110772 M

a score=7098055.000000
s hg38.chr6_GL000254v2_alt   942255 559 +   4827813 CACCCGTG-------------------------------CCTCCCTCCAGCAA--------------------------------------------TCTCTCTTCATGGCTTCCTGCA-------------------------------------------------GGGTGGCAGCTACCTCGC----------------------------CCACCCATG----------GGAGCGTCTTCTGTACAGGTTCGATTGGCTTCAGCTGTTCAAACATCTTCTCTTCTGTGGTGTCTCTTTCTAGCTTTATCCACTCCTGGCCTGGTGCCCAGGCCTGACTGGATTCCTTCCTGGGGCTATCTACCTCCCAGTAACTGGGCAGATGGAGAGGCCCAGCAAAGGCCCCAGGGTTTGATGTGGCTTCCTGTGACAAATGTATCTGCTCC--AAGAGGCTGTCTTCCTTTTTTGTTCTGCTGTCCAAATTCTCCTCTTCCACAATTGAGAACAATTTTGCTTCCCTCAAAGCT-GGGCCACCGAGTTCAGGGCCCTGGTCACCCTTGGCTCACCAGCTGCCATTGTTTAGTAACAACACCAGCCTGG--GCTAG------G--TGTCTGCCGTCTGTTCTAC---------CCTG---------------------------CTTCTAGAAACCTGAGGTCAGAGAAAAACAAAACATA--TCAGCAAGAGG-GAGGGTAAGAAACAGC-TTCCTTATTTGGTCAGGGAAtgccag
s panTro5.chr6             29905052 559 + 175400573 CACCCGTG-------------------------------CCTCCCTCCAGCAA--------------------------------------------TCTCTCTTCATGGCTTCCTGCA-------------------------------------------------GGGTGGCAGCTACCTCGC----------------------------CCACCCATG----------GGAGCGTCTTCTGTACAGGTTCGATTGGCTTCAGCTGTTCAAACATCTTCTCTTTTGTGGTGTCTCTTTCTAGCTTTATCCACTCTTGGCCTGGTGCCCAGGCCTGACTGGATTCCTTCCTGGGGCTATCTACCTCCCAGTAACTGGGCAGATGGAGAGGCCCAGCAAAGGCCCCAGGGTTTGATGTGGCTTCCTGTGACAAATGTATCTGCTCC--AAGAGGCTGTCTTCCTTTTTTGTTCTGCTGTCCAAATTCTCCTCTTCCACAGTTGAGAACAATTTTGCTTCCCTCAAAGCT-GGGCCACAGAGTTCAGGGCCCTGGTCACCCTTGGCTCACCAGCTGCCATTGTTTAGTAACAACACCAGCCTGG--GCTAG------G--TGTCTGCCCTCTGTTCTAC---------CCTG---------------------------CTTCTAGAAACCTGAGGTCAGAGAAAAACAAAACATA--TCAGCAAGAGG-GAGGGTAAGAAACAGC-TTCCTTATTTGGTCAGGGAAtgccag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30138809 559 + 173848474 CACCCGTG-------------------------------CCTCCCTCCAGCAA--------------------------------------------TCTCTCTTCATGGCTTCCTGCA-------------------------------------------------GGGTGGCAGCTACCTCGC----------------------------CCACCCATG----------GGAGCGTCTTCTGTACAGGTTCGATTGGCTTCAGCTGTTCAAACATCTTCTCTTTTGTGGTGTCTCTTTCTAGCTTTATCCACTCTTGGCCTGGTGCCCAGGCCTGACTGGATTCCTTCCTGGGGCTATCTACCTCCCAGTAACTGGGCAGATGGAGAGGCCCAGCAAAGGCCCCAGGGTTTGATGTGGCTTCCTGTGACAAATGTATCTGCTCC--AAGAGGCTGTCTTCCTTTTTTGTTCTGCTGTCCAAATTCTCCTCTTCCACAGTTGAGAACAATTTTGCTTCCCTCAAAGCT-GGGCCACAGAGTTCAGGGCCCTGGTCACCCTTGGCTCACCAGCTGCCATTGTTTAGTAACAACACCAGCCTGG--GCTAG------G--TGTCTGCCCTCTGTTCTAC---------CCTG---------------------------CTTCTAGAAACCTGAGGTCAGAGAAAAACAAAACATA--TCAGCAAGAGG-GAGGGTAAGAAACAGC-TTCCTTATTTGGTCAGGGAATGCCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5938450 558 +   6154872 CACCCGTG-------------------------------CCTCCCTCCAGCAA--------------------------------------------TCTCTCTTCATGGCTTCCTGCA-------------------------------------------------GGGTGGCAGCTACCTCGC----------------------------CCACCCATG----------GGAGCGTCTTCTGTACAGGTTCGATTGGCTTCAGCTGTTCAAACATCTTCTCTTCTGTGGTGTCTCTTTCTAGCTTTATCCACTCCTGGCCTGGTGCCCAGGCCTGACTGGATTCCTTCCTGGGGCTATCTACCTCCCAGTAACTGGGCAGATGGAGAGGCCCAGCAAAGGCCCCAGGGTTTGATGTGGCTTCCTGTGACAAATGTATCTGCTCC--AAGAGGCTGTCTTCCTTTTTTGTTCTGCTGTCCAAATTATCCTCTTCCACAATTGAGAACAATTTTGCTTCCCTCAAAGCTGGGGCCACAGAGTTCAGGGCCCTGGTCACCCTTGGCTCACCAGCTGCCATTGTTTAGTAACAACACCAGCCT----GCTAG------G--TGTCTGCCCTCTGTTCTAC---------CCTG---------------------------CTTCTAGAAACCTGAGGTCAGAGAAAAACAAAACATA--TCAGCAAGAGG-GAGGGTAAGAAACAGC-TTCCTTATTTGGTCAGGGAAtgccag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74655386 557 + 122973662 CACCCATG-------------------------------CCTCCCTCCAGCAA--------------------------------------------TCTCTCTTCATGGCTTCCTGCA-------------------------------------------------GGGTAGCAGATACCTCGC----------------------------CCACCCATG----------GGAGCATCTTCTGTACAGGTTCAACTGGCTTCAGCTGTTCAAACATCTTCTCTTCTGTGGTGTCTCTTTCTAGCTTTATACACTCCTGGCCTGGTGCCCAGGGCTGACTGGATTCCTTCCTGGGGCTATCTACCTCCCAGTAACTGGGCAGATGGAAAGGCCCAGCAAAGGCCCCAGGGTTTGATGTGGCTTCCTGTGACAAATGTATCTGCTCC--AAGAGGTTGTCTTCCTTTTTTGTTCTGCTGTCCAAATTCTCCTCTTCCACAATTGAGAACAACTTTGCTTCCCTCAAAGCCGGGGCCACAGAGTTCAGGGTCCTGGTCACCCTTGGCTCACCAGCTGCCATTGTTTAGT---AACATCAGGCTGG--GCTAG------G--TGTCTGCCCTCTGTTCTAC---------CCTG---------------------------CTTCTAGAAACCTGAGGTCAGAGAAAAACAAAACATA--TCAGCAAGTGG-GAGGGTAAGAAACAGC-TTCCTTATTTGGTCAGGGAATGCCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30138373 557 + 172585720 CACCCATG-------------------------------CCTCCCTCCAGCAA--------------------------------------------TCTCTCTTCATGGCTTCCTGCA-------------------------------------------------GGGTGGCAGCTACCTTCC----------------------------CCACCCATG----------GGAACATCTTCTGTACAGGTTCGATTGGCTTCAGCTGTTCAAACATCTTCTCTTCTGTGGTGTCTCTTTCTAGCTTTATCCACTCCTGACCTGGCGCCCAGGGCTGACTGGATTCCTTCCTGGGGCTATCTACCTCCCAGTAACTGGGCAGATGGAGAGTCTCAGCAAAGGCCCCAGGGTTTGATGTGGCTTCCTGTGACAAATGTATCTGCTCC--AAGAGGCTGTCTTCCTTTTTTGTTCTGCTGTCCAAATTCTCCTCTTCCACAATCGAGAACAACTTTGTTTCCCTCAAAGCCTGGGCCACAGAGTTCAGGGCCCTGGTCACCCTTGGCTCACCAGCTGCCATTGTTTAGT---AACACCAGGCTGG--GCTAG------G--TGTCTGCCCTCTGTTCTAC---------CCTG---------------------------CTTCTATATACCTGAAGTCAGAGAAAAACAAAACATA--TCAGCAAGAGG-GAGGGTAAGAAACAGC-TTCCTTATTTGGTCAGGGAATGCCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29801834 557 - 170955103 CACCCATG-------------------------------CCTCCCTCCAGCAA--------------------------------------------TCTCTCTTCATGGCTTCCTGCA-------------------------------------------------GGGTGGCAGCTACCTTCC----------------------------CCACCCATG----------GGAACATCTTCTGTACAGGTTCGATTGGCTTCAGCTGTTCAAACATCTTCTCTTCTGTGGTGTCTCTTTCTAGCTTTATCCACTCCTGACCTGGCGCCCAGGGCTGACTGGATTCCTTCCTGGGGCTATCTACCTCCCAGTAACTGGGCAGATGGAGAGTCTCAGCAAAGGCCCCAGGGTTTGATGTGGCTTCCTGTGACAAATGTATCTGCTCC--AAGAGGCTGTCTTCCTTTTTTGTTCTGCTGTCCAAATTCTCCTCTTCCACAATCGAGAACAACTTTGTTTCCCTCAAAGCCTGGGCCACAGAGTTCAGGGCCCTGGTCACCCTTGGCTCACCAGCTGCCATTGTTTAGT---AACACCAGGCTGG--GCTAG------G--TGTCTGCCCTCTGTTCTAC---------CCTG---------------------------CTTCTATATACCTGAAGTCAGAGAAAAACAAAACATA--TCAGCAAGAGG-GAGGGTAAGAAACAGC-TTCCTTATTTGGTCAGGGAATGCCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2847395 557 -   2996164 CACCCATG-------------------------------CCTCCCTCCAGCAA--------------------------------------------TCTCTCTTCATGGCTTCCTGCA-------------------------------------------------GGGTGGCAGCTACCTTGC----------------------------CCACCCACG----------GGAACATCTTCTGTACAGGTTCGATTGGCTTCAGCTGTTCAAACATCTTCTCTTCTGTGGTGTCTCTTTCTTGCTTTATCCACTCCTGACCTGGCGCCCAGGGCTGACTGGATTCCTTCCTGGGGCTATCTACCTCCCAGTAACTGGGCAGATGGAGAGTCTCAGCAAAGGTCCCAGGGTTTGATGTGGCTTCCTGTGACAAATGTATCTGCTCC--AAGAGGCTGTCTTCCTTTTTTGTTCTGCTGTCCAAATTGTCCTCTTCCACAATTGAGAACAACTTTGTTTCCCTCAAAGCCTGGGCCACAGAGTTCAGGGCCCTGGTCACCCTTGGCTCACCAGCTGCCATTGTTTAGT---AACACCAGGCTGG--GCTAG------G--TGTCTGCCCTCTGTTCTAC---------CCTG---------------------------CTTCTATATACCTGAGGTCAGAGAAAAACAAAACATA--TCAGCAAGAGG-GAGGGTAAGAAACAGC-TTCCTTATTTGGTCAGGGAATGCCAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     596168 557 +    766320 CACCCATG-------------------------------CCTCCCTCCAGCAA--------------------------------------------TCTCTCTTCATGGCTTCCTGCA-------------------------------------------------GGGTGGCAGCTACCTTGC----------------------------CCACCCATG----------GGAACATCTTCTGTACAGGTTCGATTGGCTTCAGCTGTTCAAACATCTTCTCTTCTGTGGTGTCTCTTTCCAGCTTTATCCACTCCTGACCTGGCGCCCAGGGCTGATTGGATTCCTTCCTGGGGCTATCTACCTCCCAGTAACTGGGCAGATGGAGAGGCTCAGTAAAGGTCCCAGGGTTTGATGTGGCTTCCTGTGACAAATGTATCTGCTCC--AAGAGGCTGTCTTCCTTTTTTGTTCTGCTGTCCAAATTCTCCTCTTCCACAATTGAGAACAACTTTGTTTCCCTCAAAGCCTGGGCCACAGAGTTCAGGGCCCTGGTCACCCTTGGCTCACCAGCTGCCATTGTTTAGT---AACACCAGGCTGG--GCTAG------G--TGTCTGTCCTCTGTTCTAC---------CCTG---------------------------CTTCTATATACCTGAGGTCAGAGAAAAACAAAACATA--TCAGCAAGAGG-GAGGGAAAGAAACAGC-TTCCTTATTTGGTCAGGGAATGCCAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29053299 557 -  71996105 CACCCATG-------------------------------CCTCCCTCCAGCAA--------------------------------------------TCTCTCTTCATGGCTTCCTGCA-------------------------------------------------GGGTGGCAGCTACCTTGC----------------------------CCACCCATG----------GGAACATCTTCTGTACAGGTTCGATTGGCTTCAGCTGTTCAAACATCTTCTCTTCTGTGGTGTCTCTTTCTAGCTTTATCCACTCCTGGCCTGGCGCCCAGGGCTGACTGGATTCCTTCCTGGGGCTATCTACCTCCCAGTAACTGGGCAGATGGAGAGGCTCAGCAAAGGCCCCAGGGTTTGATGTGGCTTCCTGTGACAAATGTATCTGCTCC--AAGAGGCTGTCTTCCTTTTTTGTTCTGCTGTCCAAATTCTCCTCTTCCACAATCGAGAACAACTTTGTTTCCCTCAAAGCCTGGGCCACAGAGTTCAGGGCCCTGGTCACCCTTGGCTCACCAGCTGCCATTGTTTAGT---AACACCAGGCTGG--GCTAG------G--TGTCTGCCCTCTGTTCTAC---------CCTG---------------------------CTTCTATATACCTGAGGTCAGAGAAAAACAAAACATA--TCAGCAAGAGG-GAGGGTAAGAAACAGC-TTCCTTATTTGGTCAGGGAGTGCCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     257850 557 +    290775 CACCCATG-------------------------------CCTCCCTCCAGCAA--------------------------------------------TCTCTCTTCATGGCTTCCTGCA-------------------------------------------------GGGTGGCAGCTACCTTGC----------------------------CCACCCATG----------GGAACATCTTCTGTACAGGTTCGATTGGCTTCAGCTGTTCAAACATCTTCTCTTCTGTGGTGTCTCTTTCCAGCTTTATCCACTCCTGACCTGGCGCCCAGGGCTGACTGGATTCCTTCCTGGGGCTATCTACCTCCCAGTAACTGGGCAGATGGAGAGGCTCAGCAAAGGTCCCAGGGTTTGATGTGGCTTCCTGTGACAAATGTATCTGCTCC--AAGAGGCTGTCTTCCTTTTTTGTTCTGCTGTCCAAATTCTCCTCTTCCACAATTGAGAACAACTTTGTTTCCCTCAAAGCCTGGGCCACAGAGTTCAGGGCCCTGGTCACCCTTGGCTCACCAGCTGCCATTGTTTAGT---AACACCAGGCTGG--GCTAG------G--GGTCTGCCCTCTGTTCTAC---------CCTG---------------------------CTTCTATATACCTGAGGTCAGAGAAAAACAAAACATA--TCAGCAAGAGG-GAGGGTAAGAAACAGC-TTCCTTATTTGGTCAGGGAATGCCAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2691244 556 -   3067355 CACCCATG-------------------------------CCTCCCTCCAGCAA--------------------------------------------TCTCTCTTCATGGCTTCCTGCA-------------------------------------------------GGGTGGCAGCTACCTTGC----------------------------CCACCCATG----------GGAACATCTTCTGTACAGGTTCGATTGGCTTCAGCTGTTCAAACATCTTCTCTTCTGTGGTGTCTCTTTCTAGCTTTATCCACTCCTGGCCTGGCGCCCAGGGCTGACTGGATTCCTTCCTGGGGCTATCTACCTCCCAGTAACTGGGCAGATGGAGAGGCTCAGCAAAGGTCCCAGGGTTTGATGTGGCTTCCTGTGACAAATGTATCTGCTCC--AAGAGGCTGTCTTTCTTTTTTGTTTTGCTGTCCAAATTCTCCTCTTCCACAATTGAGAACAACTTTGTTTCCCTCAAAGCCTGGGCCACAGAGTTCAGGGCCCTGGTCACCCTTCGCTCACCAGCTGCCATTGTTTAGT---AACACCAGGCTGG--GCTAG------G--TGTCTGCCCTCTGTTCTAC---------CCTG---------------------------CTTCTATATACCTGAGGTCAGAGAAAAACAAAACATA--TCAGCAAG-GG-GAGGGTAAGAAACAGC-TTTCTTATTTGGTCAGGGAATGCCAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      68729 557 +    132061 CACCCATG-------------------------------CCTCCCACCAGCAA--------------------------------------------TCTCTCTTCATGGCTTCCTGCG-------------------------------------------------GGGTGGTGGCTACCTCGC----------------------------CCACCCATG----------GGACCGTCTTCTGTACAGGTGCGATGGGCTTCAGCTGTTCAAACACCTTCTCTTCTGTGGTGCCTCTTTCTAGCTTTATCCACTCCTGGCCTGGCACCCAGGGCTGACTGGACTCCTTCCTGGGGCTATCTACCTCCTGGTAACTGGGCAGATGGAGAGGTTTAACAAAGACCCCAGGGTTTGATGTGGCTTCCTGTGACAAATGCATCTGCTCC--AAGAGACTGTCTTCCTTTTTTGTTCTGCTGTCCAAAGTCTCCTCTTCCACAATTGAGAACAACTTTGCTTCCGTCAAAGCCAGGGCCACAGAGTTCAGGGCCCTGGTCACCCTTCGCTCACCAGCTGCCATTGTTTAGT---AACTGGAGGCTGG--GCTAG------G--TGTCTGCCCTCTG-TCCAC---------CCTG---------------------------CTTCTAGAAACCTGAGGTCAGAGAAAAACAAAATATA--TCATCAAGAGGTTAGGGTAAGAAACAGC-TTTTTTATCTGGTCAGGGAATGCCAG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     287424 549 -   1771730 CACCCATG-------------------------------CCTCCCACCAGCAA--------------------------------------------TCTCTCTTCATGGCTTCCTGCA-------------------------------------------------GGGTGGCGGCTACCTCGC----------------------------CCACCCATG----------GGAGCGTCTTCTGTACAGGTTCGATTG---------GTTCAAACACCTTCTCTTCTGTGGTGTCTCTTTCTAGCTTTATCCAGTCCTGGCCTGGCACCCAGGGCTGACTGGACCTCTTCCTGGAGCTATCTACCTCCCGGGAACTGGGCAGATGGAGAGGTCCAACAAAGGCCCCAGGGTTTGATGGGGCTTCCTGTGACAAATGCATCTGCTCC--AAGAGGCTGTCTTCCTTTTTTGTTCTGCTGTCCAAATTCTTTTCTTCCACAATTGAGAA-AACCTTCCTTCCTTCAAAGCCAGGGCCACAGAGTTCAGGGCCCTGGCCACCCTTCTCTCACCAGCTGCCACTGTTTAGT---AACTCCAGGCTGG--GCTAG------G--TGTCTGCCCTCTGTTCCAC---------CCTG---------------------------CTTCTAGAAACCTGAGGTCAGAGAAAAACAAAATATA--TCAGCAAGAGGTTAGGGTAAGAAACAGCTTTTTTTATCAGGTCGGGGAATGCCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     358348 558 -    457564 CACCCATG-------------------------------CCTTCCCCCAGCAA--------------------------------------------TCTCTCTTCATGGCTTCCTGCC-------------------------------------------------AGGTGGCGGCTACCTCGG----------------------------CCACCCATG----------GGACCATCTTCTGTACAGGTTTGATTGGCTTCAGCTGTTCAAACACCTTCTCTTCTGCGGTGTCTCTTTCTAGCTTTATCCACTTCTGGCCTGGCACCCAGGGCTGACTGGACTCCTTCCTGGGGCTATCTACCTCCCGGGAACTGGGCAGATGGAGAGGTCCAACAAAGGCCCCAGGGTTTGATGTGGCTTCCTGTGACAAATACATCTGCTCC--AAGAGGCTGTCTTCCTTTTTTGTTCTGCTGTCCAAATTCTTCTCTTCCACAATTGAGAACAATTTTGCTTCCCTCAAAGCCAGGGCCACAGAGTTCAGGGCCCTGGTCACCCTTCGCTCACCAGCTGCCATTGTTTAGT---ATCTCGAGGCTGG--GCTAG------G--TGTCTGCCCTCTGTTCCAC---------CCTG---------------------------CTTCTAGAAACCTGAGGTCAGAGAAAAACAAAATATA--TCAGCAAGAGGTTAGGGTAAGAAACAGC-TTTTTTATCTGGTCAGGGAATGCCAG
i aotNan1.NW_018509740v1   C 0 C 0
s micMur3.chr6               200072 559 + 123392446 -ACCCATG-------------------------------CTTCCCACCAGCTC--------------------------------------------TCTGTTTTCATGGCTGCCTTCA-------------------------------------------------GGGCAGTTGCCACCTCGC----------------------------CCACCCACG----------GGGACGTCTTCTGCACGGATTCCATCGGCTTCAGCCAGTCAAGCACTTTCTCTTCCCTGGTGCCTCCTTCTTCCTTTACCCACTCCTGGGTTGGCCCCCAGGGCTGGCTGGTCTCCTTCCTGGAGCTATCCACCTCCCCAGAATCAAGCAGAGGGGGACGCCCCACAGGGGCCCCAGGATTTGATGTGGCTTCCTGTGACAAATGTGTCTGCTCC--GAGGGGCTGTCTTCCTTTTTGGTTGTGCTGTCCAGATTCTCCTCTTCCACGGCTGAGGACACCTTTGGTTCCCTCGAGGTCTGGGCCACAGAGTTGAGGGCCCTGCTCACCCTTGGC---CCAACTGCCATTATCCAGC---AACGCCAGGCTGG--GGGGGAGGGGTG--TGTCTGGCCTCTGTTCCAC---------CCTG---------------------------CTTCTAGAAACCTGAGGTCAGAGAGAGACAAAACATA--TCAGCAAGAAG-GAGAGTATGAAGCACC-TTCCTTGTTTGGTCAGGGAATGCCAG
i micMur3.chr6             C 0 I 1411
s proCoq1.NW_012152574v1     660790 554 +    730504 cacctgcg-------------------------------cctcccaccagcac--------------------------------------------TCTTTCTTCATGGCTTCCTGCA-------------------------------------------------GGGCAGCTGCCACCTCGC----------------------------CCACCCACG----------GGAACATCTTCCGCACACGTTCCATCGGCTTCAACTGGTCAAGTACTTTCTCTTCCCTGGTGCCTCCTTCTTCCTTTACCCACTCCTGGCCTGGCCCCCAGGGCTGGCTGGTCTCCTTCCTGGGGCTATTCACCTCCCAGGAACTGAGCAGAGGGGGACGCCCCACATGGGCCCCAGGGTTTGATGTGGCATCCTGTGACAAATGTATCTGCTCC--AAGGGGCTGTCTTCCTTTTTTGTTGTGCTGTACAGATTCTCCTCTTCCACGATCGAGGACACCTTTGGCTCCCTCGAGGCCTGAGCCACAGAGTCGAGGGCCCTGTTCACTCTTGGC---CCAGTTGCCATTGTCCAGC---AATGCCAGGCTGG--GCTGG------G--CGTCTGGCCTCTGTTCCAC---------CCTG---------------------------CTTCTAGAAACCTGCAGTCAGAGAGAAACAAAACATA--TCAGCAAGAAG-GAGAGTATGAAAAACC-TTCcttatttggtcagggaatgccag
i proCoq1.NW_012152574v1   I 92 C 0
s otoGar3.GL873550           168638 512 +  18854210 -ACCCACT-------------------------------CCTCTCGCCAGCAA--------------------------------------------TCTATCTTTATGGATTCCTGCA-------------------------------------------------GGGCAGCTAACACCTCAC----------------------------CCATCCACG----------AGAACATCTTCTGTACAGGTTCCACTGG----AAC-----------------------AGTGTCTCTTTTTTCCTTTACCCAGTCCTGGCCCGATTCCCCAGGCTGGCTGGTCTCCTTCTTAGGGCTATCTATCTCCCAGTAACTGAGCAAGGAAAGAGACCCCACAAAGGCCCCAGGGTTTGATGTGGCTTTCTGTGACAAATGTATCTGCTCC--AAGGGGCTGTCTTCCTTTTTTGTTCTGCTGTCCAAATTCTCCTCTTCCACAACTAAGAACATTTTTGGTTCCCTCAAAGCCTGGACCACAGAGTTCAGAGCCCTGGTCACCGTTGGC---TCAGCTGCCATTGTCCCGC---AATGCCAGGCTTG--GGTGG------G--TTACTA-------------------------G---------------------------CTTGTAGAAACCTGAGGGCAGAGAAAAACAAAATATATGTCAGTAAGAGG-CAGAGTAGGAAACACC-TTCCTTATTTAGTCAGGGAATGCCAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57981826 718 -  94987271 tacctgtgttctgagaaatctctcactgaacctgaagctcttcaactcaacaagaatatctggctagaaagcctctgggattattctgctgaccttgtctgtctgtctgtcttccttccgtttgttttaatgtggagactgaagatcccacattgggtcttcaactttgtgcaacaagtactttacaacatgccgagccatctccccagtcTTTCCACCCATAATCTTTCTTTGGGGCTTCTATAGAGCAGCTAACATACTACCTACCCCATGGAGCAGCATGTCTTTAGTGGTGTCTCTTTCTACTTTTAGAGCCTTCTGGTCTGGATCCCAAGGCTAA-------------TGGGACTCTATATTTCCCAGGCACTGGGCAGTTGGAGGGTTCCTACATGAGCCCCAGAATTTGATACTGCTTCTTATAACAAAAGTATCTACTCTAAAAAAGGTTGTCTTCCTTGATGGTTCAACTGTCCAAATTCTC--CTTTCATGATTG---ACAGCTTTAGTTCCCTCAAAGCCCAGGCCATAGAATTCAGGGCTCTGATTACCTGTTTC---CTAGCTGCCATTGTTTGGT---AATGCCAGGCTGG-TCCTAG------G--CGTTTGACTTCTATTCCAG---------ACTGCTTCTAGCCACAATTTGTTGGTGCCCACTTCTAGAAATCTAAGGTTTAAGAAAAATAGATAATA--TCAGCAAAGGGAGAGAGTAAGGAATAAG-TGCCTCC---------GTAGCACC--
i mm10.chr17               I 1 C 0
s canFam3.chr35            26270710 486 +  26524999 CACCCATG-------------------------------CCTTCCACCAGCTC--------------------------------------------TCTCCGTGTTTGGCTTCCCCCT-------------------------------------------------G---------------------------------------------CC-----------------GGAGCAGCGCCTGCAGCAGTGCCACGGAATCCCGCTGTGCAAACACCTCCTCCTCCGTGGTGTCTGCCTCTAGCTTCATCCACCCTGGGCCCAGGCCCCAG---TGACT---------------ACAGTCTGTCTCTCGGTCACTGCGCAGGCGCACCAGCTTTGCAGAGGCCTTGGGGTTTGGCATGGTTTCCCTGGACCAATGCCTCTGCTCC--AAGGGGCTGCTGT--TTTTCTGCTCTGCGGTCCAAATTTTCCTGT-------ATGAGGAGTGCACT--TTCCCTCAAAGCCGAGGCC-CAGGGCTCAGGGACTTGTC--CCCGTGGC---TCAGCCACCCTGGCCCAGG---GATGCC-GCCTGGGGGCTAC------GAAGATCTGCCTTCCATTCCACTGGCTGCTGCCTG---------------------------CCTCTAGAGACCTGAGGTCAGAGAGAAACAGAACAGC---------------------------AGC-TTTTGTCCTGGCTCAAAGAACAGCAA
i canFam3.chr35            C 0 C 0
e saiBol1.JH378388            22819 4765 -    110772 M

a score=74914.000000
s hg38.chr6_GL000254v2_alt   942814 6 +   4827813 cagtta
s panTro5.chr6             29905611 6 + 175400573 cagtta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30139368 6 + 173848474 CAGTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5939008 6 +   6154872 cagtta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74655943 6 + 122973662 CAGTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30138930 6 + 172585720 TAGTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29802391 6 - 170955103 TAGTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2847952 6 -   2996164 TAGTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     596725 6 +    766320 TAGTTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29053856 6 -  71996105 TAGTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     258407 6 +    290775 TAGTTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2691800 6 -   3067355 TAGTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      69286 6 +    132061 TAGTTA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     287973 6 -   1771730 CAGTTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     358906 6 -    457564 CAGTTA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     661344 6 +    730504 gagtta
i proCoq1.NW_012152574v1   C 0 I 1403
s otoGar3.GL873550           169150 6 +  18854210 GAGTTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57982544 6 -  94987271 CAGTTA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26271196 6 +  26524999 GAATTA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               200631 1411 + 123392446 I
e saiBol1.JH378388            22819 4765 -    110772 M

a score=764483.000000
s hg38.chr6_GL000254v2_alt   942820 75 +   4827813 ctaaaccccta-cagtgtgccactggatgctctcag-------caat-------gaggtaacaattactggccctgtctt-aag-gacctaa
s panTro5.chr6             29905617 75 + 175400573 ctaaaccccta-cagtgtgccactggatgctctcag-------caat-------gaggtaacaattactggccctgtctt-aag-gacctaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30139374 74 + 173848474 CTAAACCCCTA-CAGTGTGCCACTGGATGCTCTCAG-------CAAT-------GAGGTAACAATTACTGGCCC-GTCTT-AAG-GACCTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5939014 75 +   6154872 ctaaacccctg-ctgtgtgccactggatgctctcag-------caat-------gaggtaagaattactggccctgtctt-aag-gacctaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74655949 75 + 122973662 CTAAACCCCTG-CTGTGTGCcattggatgctctcag-------caat-------gaggtaacaattactggccctgtctt-aag-gacctaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30138936 75 + 172585720 TTAAACCCCTG-CTGTGTGCcattggatgctctcag-------caat-------gaggtaacaattactggccctgtctt-aag-gacctaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29802397 75 - 170955103 TTAAACCCCTG-CTGTGTGCcattggatgctctcag-------caat-------gaggtaacaattactggccctgtctt-aag-gacctaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2847958 75 -   2996164 TTAAACCCCTG-CTGTGTGCcattggatgctctcag-------caat-------gaggtaacaattactggccctgtctt-aag-gacctaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     596731 75 +    766320 TTAAACCCCTG-CTGTGTGCCATTGGATGCTCTCAG-------CAAT-------GAGGCAACAATTACTGGCCCTGTCTT-AAG-GACCTAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29053862 75 -  71996105 TTAGACCCCTG-CTGTGTGCcattggatgctctcag-------caat-------gaggtaacaattactggccccgtctt-aag-gacctaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     258413 75 +    290775 TTAAACCCCTG-CTGTGTGCCATTGGATGCTCTCAG-------CAAT-------GAGGCAACAATTACTGGCCCTGTCTT-AAG-GACCTAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2691806 75 -   3067355 TTAAACCCCTG-CTGTGTGCcattggatgctctcag-------caat-------gaggtaacaattactggccctgtctt-aag-gacctaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      69292 75 +    132061 TTAAACTCCTG-CTGTGTGCcactgaatgctctcag-------caat-------gaggtaacaatttctggtcccatctt-aag-gacctaa
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     287979 75 -   1771730 TTAAACCCCTG-CTGTGTGCCACTGAATGCTCTCAG-------CAAT-------GAGGTAACAATTTCTGGCCCCATCTT-AAG-GACCTAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     358912 75 -    457564 TTAAACCCCTG-CTGTATGCCACTGAATGCTCTCAG-------CAAT-------GAGGTAACAATTTCTGGCTCCATCTT-AAG-GACCTAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           169156 77 +  18854210 TTAAACCTCtg-ctctatgccattgaatcctctcagcactgtccaat-------gaggtaa-----actggccccatctt-aat-gacctaa
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57982550 76 -  94987271 CTAGCTTCCTG-CACTGTGGTA--GAGCCTTCTCCG-------CAGTACCAAGAGAGGTAA-----ATTGGCTCCATTTTCACA-AACCTCA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26271202 70 +  26524999 CTGACCCCCCGTCTCTGGGTCAGCAGG---GCCCGG------------------GAGGTAATCATTACCGACCCCACCTC-ATGAGACCTAA
i canFam3.chr35            C 0 I 98
e micMur3.chr6               200631 1411 + 123392446 I
e proCoq1.NW_012152574v1     661350 1403 +    730504 I
e saiBol1.JH378388            22819 4765 -    110772 M

a score=223654.000000
s hg38.chr6_GL000254v2_alt   942895 23 +   4827813 --tgcagagatgctaaataattttc-
s panTro5.chr6             29905692 23 + 175400573 --tgcagagatgctaaataattttc-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30139448 23 + 173848474 --TGCAGAGATGCTAAATAATTTTC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5939089 23 +   6154872 --tgcagagatgctaaataattttc-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74656024 23 + 122973662 --tgcagagatgctaaataattttc-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30139011 23 + 172585720 --tgcagagatgctaaataattttc-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29802472 23 - 170955103 --tgcagagatgctaaataattttc-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2848033 23 -   2996164 --tgcagagatgctaaataattttc-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     596806 23 +    766320 --TGCAGAGATGCTAAATAATTTTC-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29053937 23 -  71996105 --tgcagagatgctaaataattttc-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     258488 23 +    290775 --TGCAGAGATGCTAAATAATTTTC-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2691881 23 -   3067355 --tgcagagatgctaaataattttc-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      69367 23 +    132061 --tgcacagatgctaaataattttc-
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     288054 23 -   1771730 --AGCACAGATGCTAAATAATTTTC-
i cebCap1.NW_016107755v1   C 0 M 1445
s aotNan1.NW_018509740v1     358987 23 -    457564 --TGCACAGATGCTAAATAATTTTT-
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           169233 25 +  18854210 agtgcagagatggtgagtaacctgt-
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57982626 24 -  94987271 --AGAATAAGCGTTAAGTCATCCATT
i mm10.chr17               C 0 C 0
e micMur3.chr6               200631 1411 + 123392446 I
e proCoq1.NW_012152574v1     661350 1403 +    730504 I
e canFam3.chr35            26271272 98 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M

a score=607348.000000
s hg38.chr6_GL000254v2_alt   942918 79 +   4827813 caaggacaAGTGGACATTCTTGATCTACA--aaagttaatgtttaaacctaatgttaatgttaGACTCAGTACCattggaa
s panTro5.chr6             29905715 79 + 175400573 caaggacaGGTGGACATTCTTGATCTACA--aaagttaatgtttaaacctaatgttaatgttaGACTCAGTACCattggaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30139471 79 + 173848474 CAAGGACAAGTGGACATTCTTGATCTACA--aaagttaatgtttaaacctaatgttaatgttaGACTCAGTACCattggaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5939112 79 +   6154872 caaggacaAGTGGACATTCTTGATCTACA--aaagttaatgtttaaacctaatgttaatgttaGACTCAGTACCattggaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74656047 79 + 122973662 caaggacaAGTGGACATTCTTGATCTACA--aaagttaatgtttaaacctaatgttaatgttaGACTCAGTACCattggaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30139034 79 + 172585720 caaggacaAGTGGACATTCTTGATCTACA--AAAGTTAATGTTTAAACCTAACGTTAATGTTAGACTCAGTACCattggaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29802495 79 - 170955103 caaggacaAGTGGACATTCTTGATCTACA--AAAGTTAATGTTTAAACCTAACGTTAATGTTAGACTCAGTACCATTGGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2848056 79 -   2996164 caaggacaAGTGGACATTCTTGATCTACA--AAAGTTAACGTTTAAACCTAACGTTAATGTTAGACTCAGTACCGTTGGAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     596829 79 +    766320 CAAGGACAAGTGGACATTCTTGATCTACA--AAAGTTAATGTTTAAACCTAACGTTAATGTTAGACTCAGTACCattggaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29053960 79 -  71996105 caaggacaAGTGGACATTCTTGATCTACA--AAAGTTAATGTTTAAACCTAACGTTAATGTTAGACTCAGTACCattggaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     258511 79 +    290775 CAAGGACAAGTGGACATTCTTGATCTACA--AAAGTTAATGTTTAAACCTAACGTTAATGTTAGACTCAGTACCattggaa
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2691904 76 -   3067355 caaggacaAGGGGACATTCTCGATCTACA--AAA---AATGTTTAAACCTAATGTTAATGTTAGACTCAGTACCactggaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      69390 68 +    132061 caaggacaTGTGGACACTCTTGATCTGCA--AAAGTTAATGTCGAAACC-----------TTTCAGTCAGTACCactagaa
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     359010 68 -    457564 CAAGGACATGTGGACACTCTTGAGCTACA--AAAGTTAATGTCTAAATC-----------TTTGAGTCAGTACCacgagaa
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           169259 61 +  18854210 caa--------ggacacccttaatccacaggagagttagcatttaaacccTA------------ACTCAGCACCATTGAAA
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57982650 58 -  94987271 CTAGGATGTG----------TGATCCACG-GGAAAGTAAAGTTTAATTC------------TAGATTCAGTACCACTGAAA
i mm10.chr17               C 0 C 0
e micMur3.chr6               200631 1411 + 123392446 I
e proCoq1.NW_012152574v1     661350 1403 +    730504 I
e canFam3.chr35            26271272 98 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M

a score=19631.000000
s hg38.chr6_GL000254v2_alt   942997 2 +   4827813 at
s panTro5.chr6             29905794 2 + 175400573 at
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30139550 2 + 173848474 at
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5939191 2 +   6154872 at
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74656126 2 + 122973662 at
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30139113 2 + 172585720 at
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29802574 2 - 170955103 AT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2848135 2 -   2996164 AT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     596908 2 +    766320 at
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29054039 2 -  71996105 at
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     258590 2 +    290775 at
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2691980 2 -   3067355 at
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      69458 2 +    132061 at
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     359078 2 -    457564 at
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           169320 2 +  18854210 AC
i otoGar3.GL873550         C 0 I 118
s mm10.chr17               57982708 2 -  94987271 AG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26271370 2 +  26524999 AT
i canFam3.chr35            I 98 C 0
e micMur3.chr6               200631 1411 + 123392446 I
e proCoq1.NW_012152574v1     661350 1403 +    730504 I
e saiBol1.JH378388            22819 4765 -    110772 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M

a score=1156238.000000
s hg38.chr6_GL000254v2_alt   942999 138 +   4827813 catgtagctggggtaaccaggcta-ggatctgtcacagatcacctcgag-tgagtctctttattctttctgacttggtttcatcag-aaatgtgagaataaaggagacactctctaagatctcttccatgaccaaaat---------t------at
s panTro5.chr6             29905796 138 + 175400573 catgtagctggggtaaccaggcta-ggatctgtcacagatcacctcgag-tgagtctctttattctttctgacttggtttcatcag-aaatgtgagaataaaggagacactctctaagatctcttccatgaccaaaat---------t------at
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30139552 138 + 173848474 catgtagctggggtaaccaggcta-ggatctgtcacagatcacctcgag-tgagtctctttattctttctgacttggtttcatcag-aaatgtgagaataaaggagacactctctaagatctcttccaTGACCAAAAT---------T------AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5939193 147 +   6154872 catgtagctggggtaaccaggcta-ggatctgtcacagatcacctcgag-tgagtctctttattctttctgacttggtttcatcag-aaatgtgagaataaaggagacactctctaagatctcttccatgaccaaaacacacacacac------ac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74656128 135 + 122973662 catgtagctggggtaaccaggcta-ggatctgtcacagatcaccttgag-tgagtctctttattctttctgacttggtttcatcag-aaatgtgagaataaaggagacactctctaagatctcttccaTGACCAAATT------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30139115 136 + 172585720 catgtagctggggtaaccaggcta-ggatctgtcacagatcaccttgag-tgagtctctttattctttctgacttagtttcatcag-aaatgtgagaataaaggagacactctctaagatctcttccaTGACGAAAAT---------T--------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29802576 136 - 170955103 CATGTAGCTGGGGTAACCAGGCTA-GGATCTGTCACAGATCaccttgag-tgagtctctttattctttctgacttagtttcatcag-aaatgtgagaataaaggagacactctctaagatctcttccaTGATGAAAAT---------T--------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2848137 140 -   2996164 CATGTAGCTGGGGTAACCAGGGTA-GGATCTGTCACAGATCaccttgag-tgagtctctttattctttctgacttggtttcatcag-aaatgtgagaataaaggagacactctctaagatctcttccatgaccaaaat---------t----acac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     596910 136 +    766320 catgtagctggggtaaccaggcta-ggatctgtcacagatcaccttgag-tgagtctctttattctttctgacttagtttcatcag-aaatgtgagaataaaggagacactctctaagatctcttctaTGACCAAAAT---------T--------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29054041 144 -  71996105 catggagctggggtaaccaggcta-ggatctgtcacagatcaccttgag-tgagtctctttattctttctgacttggtttcatcag-aaatgtgagaataaaggagacactctctaagatctcttccatgaccaaaat---------tacacacac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     258592 138 +    290775 catgtagctggggtaaccaggcta-ggatctgtcacagatcaccttgag-tgagtctctttattctttctgacttagtttcatcag-aaatgtgagaataaaggagacactctctaagatctcttccatgacaAAAAT---------T------ac
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2691982 136 -   3067355 catgtagctggggtaaccaggcta-ggatctgtcacagatcaccttgag-tgagtctctttattctttctgacttgttttcatcag-aaatgtgagaataaaggagacactctctaagatctcttccaTGACCAAAAT---------T--------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      69460 132 +    132061 catgtacctggggtaaccaggcca-ggatctgtaacagatcaccttgtg-tgagtcttt---ttatttctgacttggtttcatcag-aaatgtgaaaataaaggagacactctctaagatccctttcaTAACCAAAAT------------------
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     359080 136 -    457564 catgtacctggggtaaccaggcca-ggatctgtcacaaatcaccttgag-tgagtctttttattatttctgacttggtttcatcag-aaatgtgagaataaaggagacactctctaagatcgcttccaTAACCCAAAT---------A--------
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           169440 121 +  18854210 CATGTTCTTGGTGTAACCAGGCCT-ATATCTGTCATCAACCACC-----------ATCTTCCTTCTCTCTGACATGGTTTTATCAG-AAACATGAGACTAAAGGAGTCACTCTCCAAGATCTCTTC-------AAGAC---------C------AT
i otoGar3.GL873550         I 118 C 0
s mm10.chr17               57982710 105 -  94987271 TACATACCTGA----------------ATGCGTCACATACCACTCTGAGTTTTGTCTCTTCATCC--TCTGACTTGATTTCACTGG-AAAGATGAGAG---------------CTTATATCTCTTCCAGGACCAGAAA---------T--------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26271372 130 +  26524999 TATTCTGCAAAGACAACAGTGCTCTGGACCTGTCACGGACCACGCCGGG-CAAGCCTC----TTCCTTCTGATCTGCTGTTGCCAGAAAATGTGG-----AAGGAGA-ACACTCCAAGACCCATCTAGTGCTGACAAC---------T------AT
i canFam3.chr35            C 0 I 553
e micMur3.chr6               200631 1411 + 123392446 I
e proCoq1.NW_012152574v1     661350 1403 +    730504 I
e saiBol1.JH378388            22819 4765 -    110772 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M

a score=292529.000000
s hg38.chr6_GL000254v2_alt   943137 47 +   4827813 acacacacacacacacacacacacacacacaATTCTGTGATCTGGAT
s panTro5.chr6             29905934 43 + 175400573 acacacacacacacacacacacacaca----ATTCTGTGATCTGGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30139690 41 + 173848474 acacacacacacacacacacacacT------ATTCTGTGATCTGGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5939340 47 +   6154872 acacacacacacacacacacacacacacacaATTCTGTGATCTGGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74656263 39 + 122973662 --acacatacacacacacacacaca------ATTCTGTGATCTGGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30139251 41 + 172585720 ------acacacacacacacacacacacaAAATTCTGTGATCTGGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29802712 39 - 170955103 --------acacacacacacacacacacaAAATTCTGTGATCTGGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2848277 47 -   2996164 acacacacacacacacacacacacacacacaattctgtgattTGGAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     597046 45 +    766320 acacacacacacacacacacacacacacaAAAT--TGTGATCTGGAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29054185 47 -  71996105 acacacacacacacacacacacacacacacaATTCTGTGATCTGGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     258730 47 +    290775 acacacacacacacacacacacacacacaAAATTCTGTGATCTGGAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2692118 35 -   3067355 ------------acacacacacacacacacaGTTCTGTGATCTGGAT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      69592 40 +    132061 -------TacacacacacacacacacacacGATTCTGTGACCTGGAT
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     359216 47 -    457564 ATacacacacacacacacacacacacacacGATTCTGTGACCTGGAT
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           169561 42 +  18854210 ACAACAACAACAACCCACAAAAAT-----CACTTCTGTGCCCTGGAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57982815 26 -  94987271 ----------------TAAAATATA-----GATTCTGTGATTTGAAT
i mm10.chr17               C 0 I 546
e micMur3.chr6               200631 1411 + 123392446 I
e proCoq1.NW_012152574v1     661350 1403 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M

a score=507049.000000
s hg38.chr6_GL000254v2_alt   943184 63 +   4827813 TTTCAATACATGTagtagttcccctttatc-atggttttgctttccaatgcttcagttacccat
s panTro5.chr6             29905977 63 + 175400573 TTTCAATACATGTagtagttcccctttatc-atggttttgctttccaatgcttcagttacccat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30139731 63 + 173848474 TTTCAATACATGTagtagttcccctttatc-atggttttgctttccaatgcttcagttacccat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5939387 63 +   6154872 TTTCAATACATGTagtagttcccctttatc-atggttttgttttccaatgcttcagttacccat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74656302 63 + 122973662 TTTCAATACATGTagtagctcccgcttatc-atggttttgctatccaatgcttcagttacccat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30139292 63 + 172585720 TTTCAATACATGTagtagttcccccttatc-atggttttgccttccaatgcttcagttacccat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29802751 63 - 170955103 TTTCAATACATGTagtagttcccccttatc-atggttttgccttccaatgcttcagttacccat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2848324 63 -   2996164 TTTCAATGCATGTagtagttcccccttatc-aaggttttgccttccaatgcttcagttacccat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     597091 63 +    766320 TTTCAATACATGTagtagttcccccttatc-atggttttgccttccaatgcttcagttacccat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29054232 63 -  71996105 TTTCAATATATGTagtagttcccccttatc-atggttttgccttccaatgcttcagttacccat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     258777 63 +    290775 TTTCAATACATGTagtagttcccccttatc-atggttttgccttccaatgcttcagttacccat
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2692153 63 -   3067355 TTTCAATACATGTagtagttcccctttatc-atggttttgctttccaatgcttcagttacccat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      69632 63 +    132061 TTTCAAGACATGTagtagctcctccttttt-gtggttttgctttccagtgtttcagttatccag
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     359263 63 -    457564 TTTCAATACATGcagtagctcccccttatc-gtggttttgctttctgatgtttcggttaaccAT
i aotNan1.NW_018509740v1   C 0 M 739
s otoGar3.GL873550           169603 49 +  18854210 TTTTAATATATTcagtagtcaccccttatctgtggttttg---------------gttacctgt
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               200631 1411 + 123392446 I
e mm10.chr17               57982841 546 -  94987271 I
e proCoq1.NW_012152574v1     661350 1403 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M

a score=1081448.000000
s hg38.chr6_GL000254v2_alt   943247 158 +   4827813 ggtcaaccatggttcaaaaatattaaatgaaaaattccggaggacaggcacagtggctcacacctgtaatcctagcattttgggaggctgaggtaggcagatcatctgaggtcaggagttcgagatcagcctggtcaacatggtgaaaccctgtctct
s panTro5.chr6             29906040 158 + 175400573 ggtcaaccatggttcaaaaatattaaacgaaaaattccagaggacaggcacagtggctcacacctgtaatcccagcattttgggaggctgaggtaggcagatcatctgaggtcaggagttcgagatcagcctggtcaacatggtgaaaccctgtctct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30139794 158 + 173848474 ggtcaaccatggttcaaaaatattaaatgaaaaattccagaggacaggcacagtggctcacacctgtaatcccagcattttgggaggctgaggtaggcagatcatctgaggtcaggagttcgagatcagcctggtcaacatggtgaaaccctgtctct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5939450 158 +   6154872 ggtcaaccatggttcaaaaatattaaatgaaaaattccagaggacaggcacagtggctcacacctgtaatcccagcattttgggaggctgaggtaggcagatcatctgaggtcaggagttcgagatcagcctggtcaacatggtgaaaccctgtctct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74656365 158 + 122973662 ggtcaaccatggttcaaaaatattaaatgaaaaaatccagaggacaggcacagtggctcacacctataatcccagcattttgggaggctgaggcaggcagatcatctggggtcaggagttcaagaccagcctggtcaacatggtgaaaccctgcctct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30139355 158 + 172585720 ggtcaaccgtggttcaaaaatattaaatgaaaaaatccagaggacaggcacagtagctcatgcctgtaatcccagcattttgggaggctgatgtaggcagatcatctgaggtcaagagttcaagaccagcctggtcaacatggtgaaaccctgtctct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29802814 158 - 170955103 ggtcaaccgtggttcaaaaatattaaatgaaaaaatccagaggacaggcacagtagctcatgcctgtaatcccagcattttgggaggctgacgtaggcagatcatctgaggtcaagagttcaagaccagcctggtcaacatggtgaaaccctgtctct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2848387 158 -   2996164 ggtcaaccgtggttcaaaaatattaaatgaaaaaatccagagaacaggcatagtagctcatgcctgtaatcccagcattttgggaggctgacgtaggcagatcatctaaggtcaggagttcaagaccagcctggtcaacatggtgaaaccctgtctct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     597154 158 +    766320 ggtcaaccgtggttcaaaaatactaaatgaaaaaatccagagaacaggcacagtagctcatgcctgtaatcccagcattttgggaggctgacgtaggcagatcatctgaggtcaagagttcaagaccagcctggtcaacatggtgaaaccctgtctct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29054295 158 -  71996105 ggtcaaccgtggttcaaaaatattaaatgaaaaaatccagaggacaggcacagtagctcatgcctgtaatcccagcattttgggaggctgatgtaggcagatcatctgaggtcaggagttcaagaccagcctggtcaacatggtgaaaccctgtctct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     258840 158 +    290775 ggtcaaccgtggttcaaaaatattaaatgaaaaaatccagaggacaggcacagtagctcatgcctgtaatcccagcattttgggaggctgacgtaggcagatcatctgaggtcaagagtttaagaccagcctggtcaacatggtgaaaccctgtctct
i manLeu1.NW_012099233v1   C 0 I 5900
s colAng1.NW_012115566v1    2692216 158 -   3067355 ggtcaaccgtggttcaaaaatattaaatgaaaaaatccagaggacaggcacagtagctcatgtctgtaatcccagcattttgggaggctaacgtaggcagatcatctgaggtcaggagttcaagaccagcctggtcaacatggtgaaaccctgtctct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      69695 157 +    132061 ggtcaaccacggttcaaaaatattaaatgaaaaa-tccagaaGAcaggcacgatggctcatgcctgtaatcccagcactttgggaggctgagataggtggatcacctgaagtcaggagttcgagaccagcctggccaacacggtgaaactctgtctcg
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           169652 117 +  18854210 gatcaactataggtcaaaaatattaaatgaaaaattT--GAGGCTCGGCA------------CCTCTgctggccacatacactggggctggcggtttcaaatcc------------agcccaggcctagcccgctaaacaaca---------------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               200631 1411 + 123392446 I
e mm10.chr17               57982841 546 -  94987271 I
e proCoq1.NW_012152574v1     661350 1403 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M

a score=1012786.000000
s hg38.chr6_GL000254v2_alt   943405 168 +   4827813 actaaaaatacaaaaagaaaatagctgggcatagtggcacacatctgtaatcccagcaactcaggaggctgaggcaggagaatcacttgaaccctggaggtggacgttgccatga-gccaagactgcgccactg-cactccagcctgggacatagagcgagactccgtc--t
s panTro5.chr6             29906198 168 + 175400573 actaaaaatacaaaaagaaaatagctgggcatagtggcacacatctgtaatcccagcaactcaggaggctgaggcaggagaatcacttgaaccctggaggcggacgttgccatga-gccaagactgcaccactg-cactccagcctgggacatagagcgagactccgtc--t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30139952 168 + 173848474 actaaaaatacaaaaagaaaatagctgggcatagtggcacacatctgtaatcccagcaactcaggaggctgaggcaggagaatcacttgaaccctggaggcggacgttgccatga-gccaagactgcaccactg-cactccagcctgggacatagagcgagactccgtc--t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5939608 168 +   6154872 actaaaaatacaaaaagaaaatagctgggcatagtggcacacatctgtaatcccagcaactcaggaggctgaggcaggagaatcacttgaaccctggaggcggacgttgccatga-gccaagactgcaccactg-cactccagcctgggacatagagcaagactccgtc--t
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74656523 170 + 122973662 actaaaaatacaaaaagaaaatagctgggcatagtagcacacatctgtaatcccagcaacttgggaggctgaggcaggagaatcacttgaaccctggaggtggagggtgcaatga-gccaagattatgccactg-cactccagcctgggagacagaacgagactccgtcaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30139513 168 + 172585720 actaaaaatacaaaaagaaaatagctgggtatagtggcacacatctgtaatcccagcaactcgagaggctgaggcaggagaatcacttgaaccctggaggcggaggttacagtga-gccaagattgcgccactg-cattccagcctgggagatagagtgagactccgtc--c
i rheMac8.chr4             C 0 I 3
s macFas5.chr4             29802972 168 - 170955103 actaaaaatacaaaaagaaaatagctgggtatagtggcacacatctgtaatcccagcaactcgagaggctgaggcaggagaatcacttgaaccctggaggcggaggttacagtga-gccaagattgcgccactg-cattccagcctgggagatagagtgagactccgtc--c
i macFas5.chr4             C 0 I 3
s macNem1.NW_012011356v1    2848545 167 -   2996164 actaaaaatacaaaaagaaaatagctgggtatagtggcacacatctgtaatcccagcagctcgggaggctaaggcaggagaatcacttgaaccctggaggcggaggttacagtga-gccaagattgcaccactg-cattccagcctgggagacagagtgagactccgtc---
i macNem1.NW_012011356v1   C 0 I 2
s cerAty1.NW_012002711v1     597312 168 +    766320 actaaaaatacagaaagaaaatagctgagtatagtggcacacatctgtaatcccagcaactcgggaggctgaggcaggagaatcacttgaaccctggaggcggaggttacagtga-gccaagattgcgccactg-cattccagcctgggagacagagtgagactccgtc--c
i cerAty1.NW_012002711v1   C 0 I 4
s chlSab2.chr17            29054453 168 -  71996105 actaaaaatacaaaaagaaaatagctgggtatagtggcacacatctgtaatcccagcaactcgggaggctaaggcaggagaatcacttgaaccctggaggcggaggttacagtaa-gccaagattgcgccactg-cattccagcctgggagacagagtgagactccgtc--c
i chlSab2.chr17            C 0 I 14
s colAng1.NW_012115566v1    2692374 168 -   3067355 actaaaaatacaaaaagaaaatagctgggtatagtggcacacatctgtaatcccagcaactcgggaggctgaggcaggagaatcacttgaaccctggaggcagaggttacagtga-gccaagattgcgccactg-cactccagcctgggagacagagtgagactccgtc--a
i colAng1.NW_012115566v1   C 0 I 4
s calJac3.chrUn_GL286223      69852 169 +    132061 actaaaaatacaaagagaaaatagccaggcatactggtgcacatctgtaatcccagcaacttgggaggctgaggcaggagaatcacttgaaccctggaggcggaggttgcagtaa-gccgagatcgcggcactgccactccagcctgggtgacaaagtgagactccgtt--t
i calJac3.chrUn_GL286223   C 0 I 24
s otoGar3.GL873550           169769 162 +  18854210 atgacaactacaacaaaaaaatagccaggtgtggtggtgggcacctgtagtcccagctacttgggaggctgaggcaagagaatcacttaagcccaagagtttgaggttgctgtgatgccacagtag-------g-tactctaccaagggtgacataacaagactctgtc--t
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               200631 1411 + 123392446 I
e mm10.chr17               57982841 546 -  94987271 I
e proCoq1.NW_012152574v1     661350 1403 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M
e manLeu1.NW_012099233v1     258998 5900 +    290775 I

a score=1090199.000000
s hg38.chr6_GL000254v2_alt   943573 222 +   4827813 ----caaaaaaaaa-----------------tccagagataaacaattcctaagttttaaattgcttgacatt------ctgagtagtgtgatgaaatcttgtaccttttctctctggcctgccca--ggatgtgaatcatccctttgactagcatatccacactgcagacaatacctgcccattagttccttagtagctagccatctcagttaccaggttgactactgtagtatagcagttgcctgtgct
s panTro5.chr6             29906366 222 + 175400573 ----caaaaaaaaa-----------------tccagagataaacaattcctaagttttaaattgcttgacatt------ctgagtagtgtgatgaaatcttgtaccttttctctctggcctgccca--ggatgtgaatcatccctttgactagcatatccacactgcagacaatacctgcccactagttccttagtagctagccatctcagttatcaggttgactactgtagtatagcagttgcctgtgct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30140120 214 + 173848474 ----caaaaaaaaa-----------------tccagagataaacaattcctaagttttaaattgcttgacatt------ctgagtagtgtgatgaaatcttgtaccttttctctctggcctgccca--ggatgtgaatcatccctttgactagcatatccacactgcagacaatacctgcccactagttccttagtagctagccatctcagttatcaggttgactactgt--------agttgcctgtgct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5939776 222 +   6154872 ----caaaaaaaaa-----------------tccagagataaacaattcctaagttttaaattgcttgacatt------ctgagtagtgtgatgaaatcttgtaccttttctctctggcctgccca--ggatgtgaatcatccctttgactagcatatccacactgcagacaatacctgcccattagttccttagtagctagccatctcagttatcaggttgactactgtagtatagcagttgcctgtgct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74656693 221 + 122973662 ----aaaaaaaaaa-----------------tccagagataaacaattcctaacttttaaattgcttaacatt------ctgagtagcgtgatgaaatc-tgtaccttttctctctggcctgccca--ggatgtgaatcatccctttgactagcatatccacactgcagacaatatctgtccattagttccttagtagctagccatctcagttacgaggttgactattgcagtatagcagttgcctgtgct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30139684 228 + 172585720 ----aaaaaaaaaa-----------------tccagagataaacaattcctaagttttaaattgcttgacattgagtagcatgatagcatgatgaaatcttgtaccttttctctctggcctgccca--ggatgtgaatcatccatttgtctagcatatccacactgcagacaatacctgcccattagttccttagtagctagccatctcagttatcaggttgactactgcagtatagcagttgcctgtgct
i rheMac8.chr4             I 3 C 0
s macFas5.chr4             29803143 228 - 170955103 ----aaaaaaaaaa-----------------tccagagataaacaattcctaagttttaaattgcttgacattgagtagcatgatagcatgatgaaatcttgtaccttttctctctggcctgccca--ggatgtgaatcatccatttgtctagcatatccacactgcagacaatacctgcccattagttccttagtagctagccatctcagttatcaggttgactactgcagtatagcagttgcctgtgct
i macFas5.chr4             I 3 C 0
s macNem1.NW_012011356v1    2848714 228 -   2996164 ----aaaaaaaaaa-----------------tccagagataaacaattcctaagttttaaattgcttgacattgagtagcatgatagcatgatgaaatcttgtaccttttctctctggcctgccca--ggatgtgaatcatccatttgtctagcatatccacactgcagacaatacctgcccattagttccttagtagctagccatctcagttatcaggttgactactgcagtatagcagttgcctgtgct
i macNem1.NW_012011356v1   I 2 I 3512
s cerAty1.NW_012002711v1     597484 225 +    766320 ----aaaaaaaaaa-----------------tccagagataaacaattcctaagttttaaattgcttgacattgagtagcatgatagcatgatgaaatcttgtaccttttctctctggcctgccca--gaatgtga---atccatttgtctagcatatccacactgcagacaatacctgcccattagttccttagtagctagccatctcagttatcaggttgactactgcagtatagcagttgcctgtgct
i cerAty1.NW_012002711v1   I 4 C 0
s chlSab2.chr17            29054635 228 -  71996105 ----aaaaaaaaaa-----------------tccagagataaactattcctaagttttaaattgcttgacattgagtagcatgatagcatgatgaaatcttgtaccttttctctctggcctgccca--ggatgtgaatcatccatttgtctagcatatccacactgcagagaatacctgcccattagttccttagtagctagccatctcagttatcaggttgactactgcagtatagcagttgcctgtgct
i chlSab2.chr17            I 14 C 0
s colAng1.NW_012115566v1    2692546 228 -   3067355 ----aaaaaaaaaa-----------------tccagagataaacaattcctaagttttaaattgcttgacattgagtagcatgatagcatgatgaaatcttgtaccttttctctctggcctgccca--ggacatgaatcatccatttgtctagcacatccacactgcagacaatacctgcccattagttccttagtagctagccatctcagttatcaggttgactactgcagtatagcagttgcctgtgct
i colAng1.NW_012115566v1   I 4 C 0
s otoGar3.GL873550           169931 204 +  18854210 caaaaaaaaaaaaagaaagaaaaaggaaaatttcaaaaataaataatccttaagctttaatttgtgtgtcact------ctgagtaatgtgatgaaatctt-----tcttcttcctgcactggcaaatgggtatgaatcatcctcttgtccagcacatccttgctataga-----------------------------tagccatctccattaaaagac---caaatgcatcaaagtggttgtatt----
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               200631 1411 + 123392446 I
e mm10.chr17               57982841 546 -  94987271 I
e proCoq1.NW_012152574v1     661350 1403 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M
e calJac3.chrUn_GL286223      70021  24 +    132061 I
e manLeu1.NW_012099233v1     258998 5900 +    290775 I

a score=641709.000000
s hg38.chr6_GL000254v2_alt   943795 155 +   4827813 caagaatgccttattttacttaataatgacccaaaagcacaagagtagagacgctggaaattcagatatgcaaagagaag------------ccataaaataaaaaggtaaaaattcttgtcttaaggaaagaaaaaat-aatcatatgctgag-------gttgctaagattta
s panTro5.chr6             29906588 155 + 175400573 caagaatgccttattttacttaataatgacccaaaagcacaagagtagagacgctggaaattcagatatgcaaagagaag------------ccataaaataaaaaggtaaaaattcttgtcttaaggaaagaaaaaat-aatcatatgctgag-------gttgctaagattta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30140334 155 + 173848474 caagaatgccttattttacttagtaatgacccaaaagcacaagagtagagacgctggaaattcagatatgcaaagagaag------------ccataaaataaaaaggtaaaaattcttgtcttaaggaaagaaaaaat-aatcatatgctgag-------gttgctaagattta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5939998 155 +   6154872 caagaatgccttattttacttaataatgaccctaaagcacaagagtagagatgctggaaattcagatatgcaaagagaag------------ccataaaataaaaaggtaaaaattcttgtcttaaggaaagaaaaaat-aatcatatgctgag-------gttgctaagattta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74656914 155 + 122973662 caagaaccccttattttacttaacaatgaccctaaagcacaagagtggagacactggaaattcagatatgcaaagagaag------------ccataaaataaaaaggtaaaaattcttgtcttaaggaaaggaaaaat-aatcatatgctgag-------gttgctaagattta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30139912 154 + 172585720 caagaaccgcttattttacttaatcatggccctaaagcacaagagtagagatgctggaaattcagatatgcaaagagaag------------ccataaaatgaaaaggt-aaaattcttgttttaaggaaagaaaaaaa-aatcatatgctgag-------gttgctaagattta
i rheMac8.chr4             C 0 I 318
s macFas5.chr4             29803371 154 - 170955103 caagaaccgcttattttacttaatcatggccctaaagcacaagagtagagatgctggaaattcagatatgcaaagagaag------------ccataaaatgaaaaggt-aaaattcttgttttaaggaaagaaaaaaa-aatcatatgctgag-------gttgctaagattta
i macFas5.chr4             C 0 I 318
s cerAty1.NW_012002711v1     597709 154 +    766320 caagaaccgcttattttacttaatcatggccctaaagcacaagagtagagacactggaaattcagatatgcaaagagaag------------ccataaaatgaaaaggt-aaaattcttgttttaaggaaagaaaaaaa-aatcatatgctgag-------gctgctaagattta
i cerAty1.NW_012002711v1   C 0 I 318
s chlSab2.chr17            29054863 154 -  71996105 cacgaaccgcttattttacttaatcatggccctaaagcacaagagtagagacgctggaaattcagatatgcaaagagaag------------ccataaaatgaaaaggt-aaaattcttgttttaaggaaagaaaaaat-aatcatatgctgag-------gttgctaagattta
i chlSab2.chr17            C 0 I 311
s colAng1.NW_012115566v1    2692774 155 -   3067355 caagaaccccttattttacttaatcatggccctaaagcacaagagtagagacactggaaattcagatatgcaaagagaag------------ccataaaattaaaaggt-aaaattcttgtcttaaggaaagaaaaaaataatcatatgctgag-------gttgctaagattta
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           170135 169 +  18854210 caagtacctcttaatttgcttaataatggctc-aaataacaagagtagtgatgtctgcaacttggagatgccaagagaagcctaaagtgtttcctttaagtgaaaaggcaaacattcttgagttaaggggaaaaa-----aatcttatgctgaggtctgaagttgccaaaatcta
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               200631 1411 + 123392446 I
e mm10.chr17               57982841 546 -  94987271 I
e proCoq1.NW_012152574v1     661350 1403 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M
e calJac3.chrUn_GL286223      70021  24 +    132061 I
e manLeu1.NW_012099233v1     258998 5900 +    290775 I
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=35823.000000
s hg38.chr6_GL000254v2_alt   943950 8 +   4827813 caatataa
s panTro5.chr6             29906743 8 + 175400573 caatataa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30140489 8 + 173848474 caatataa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5940153 8 +   6154872 caatataa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74657069 8 + 122973662 caatgtac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30140384 8 + 172585720 caatataa
i rheMac8.chr4             I 318 C 0
s macFas5.chr4             29803843 8 - 170955103 caatataa
i macFas5.chr4             I 318 C 0
s cerAty1.NW_012002711v1     598181 8 +    766320 caatataa
i cerAty1.NW_012002711v1   I 318 C 0
s chlSab2.chr17            29055328 8 -  71996105 cAATataa
i chlSab2.chr17            I 311 C 0
s manLeu1.NW_012099233v1     264898 8 +    290775 cAATataa
i manLeu1.NW_012099233v1   I 5900 C 0
s colAng1.NW_012115566v1    2692929 8 -   3067355 caatataa
i colAng1.NW_012115566v1   C 0 I 329
s otoGar3.GL873550           170304 7 +  18854210 caataag-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               200631 1411 + 123392446 I
e mm10.chr17               57982841 546 -  94987271 I
e proCoq1.NW_012152574v1     661350 1403 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M
e calJac3.chrUn_GL286223      70021 24 +    132061 I
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=27052.000000
s hg38.chr6_GL000254v2_alt   943958 8 +   4827813 attatttt---
s panTro5.chr6             29906751 8 + 175400573 attatttt---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30140497 8 + 173848474 attatttt---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5940161 8 +   6154872 attatttt---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74657077 8 + 122973662 gttatttt---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30140392 8 + 172585720 attatttt---
i rheMac8.chr4             C 0 I 4
s macFas5.chr4             29803851 8 - 170955103 attatttt---
i macFas5.chr4             C 0 I 4
s cerAty1.NW_012002711v1     598189 8 +    766320 attatttt---
i cerAty1.NW_012002711v1   C 0 I 4
s chlSab2.chr17            29055336 8 -  71996105 attatttt---
i chlSab2.chr17            C 0 I 4
s manLeu1.NW_012099233v1     264906 8 +    290775 attatttt---
i manLeu1.NW_012099233v1   C 0 I 4
s otoGar3.GL873550           170311 8 +  18854210 ---atactcaa
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               200631 1411 + 123392446 I
e mm10.chr17               57982841 546 -  94987271 I
e proCoq1.NW_012152574v1     661350 1403 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M
e calJac3.chrUn_GL286223      70021 24 +    132061 I
e colAng1.NW_012115566v1    2692937 329 -   3067355 I
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=676756.000000
s hg38.chr6_GL000254v2_alt   943966 135 +   4827813 gagagagataccacattcatacaacttttattacaatatattgctgtaattgttctatcttattactagttattgttgtcaatctcttaccatgcctaatttgtaaattaaactttatcattattatgtatgtat
s panTro5.chr6             29906759 135 + 175400573 gagagagataccacattcatacaacttttattacaatatattgctgtaattgttctatcttattactagttattgttgtcaatctcttaccatgcctaatttgtaaattaaactttatcattattatgtatgtat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30140505 135 + 173848474 gagagagataccacattcatacaacttttattacaatatattgctgtaattgttctatcttattactagttattgttgtcaatctcttaccatgcctaatttgtaaattaaactttatcattattatgtatgtat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5940169 135 +   6154872 gagagagataccacattcatacaacttttattacaatatattgctgtaattgttctatcttattactagttattgttgtcaatctcttaccatgcctaatttgtaaattaaactttatcattattatgtatgtat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74657085 127 + 122973662 gagag-------atattcacacaacttttattacaatatattgctgtaattgttctatcttattactagctactgttgtcgatctcttaccatgcctaatttat-aatcaaactttatcattagtatgtatgtat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30140404 135 + 172585720 gagagagatatcatattcacacaacttttattacaatatactgctgtaattgttctatcttattactagttattgttgtcaatctcttaccatgcctaatttataaatcaaactttgtcattagtatgtatgtac
i rheMac8.chr4             I 4 C 0
s macFas5.chr4             29803863 135 - 170955103 gagagagatatcatattcacacaacttttattacaatatactgctgtaattgttctatcttattactagttattgttgtcaatctcttaccatgcctaatttataaatcaaactttgtcattagtatgtatgtac
i macFas5.chr4             I 4 C 0
s cerAty1.NW_012002711v1     598201 135 +    766320 gagagagataccatattcacacaacattttttacaatatactgctgtaattgttctatcttattactagttattgttgtcaatctcttaccatgcctaatttataaatcaaactttgtcattagtatgtatgtac
i cerAty1.NW_012002711v1   I 4 C 0
s chlSab2.chr17            29055348 135 -  71996105 gagagagataccatattcacacaacttttattacaatatactgctgtaattgttctatcttattactagttattgttgtcaatctcttaccatgcctaatttataaatcaaactttgtcattagtatgtatgtac
i chlSab2.chr17            I 4 C 0
s manLeu1.NW_012099233v1     264918 135 +    290775 gagagagataccatattcacacaacattttttacaatatactgctgtaattgttctatcttattactagttattgttgtcaatctcttaccatgcctaatttataaatcaaactttgtcattagtatgtatgtac
i manLeu1.NW_012099233v1   I 4 C 0
s colAng1.NW_012115566v1    2693266 135 -   3067355 gagagagataccatattcgcacaacttttattacaatatactgctgtaattgttctatcttattactagttattgttgtcaatctcttaccatgcctaatttataaatcaaactttgtcattagtacgtatgtag
i colAng1.NW_012115566v1   I 329 C 0
s otoGar3.GL873550           170319 110 +  18854210 gagagaaat---acatccatgtgacttttattacagcatattgctataattgttctattttattaatagttattgtcgt-------------tttttaatttttaaa---------attttttttatgtgtttat
i otoGar3.GL873550         C 0 I 335
e micMur3.chr6               200631 1411 + 123392446 I
e mm10.chr17               57982841 546 -  94987271 I
e proCoq1.NW_012152574v1     661350 1403 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M
e calJac3.chrUn_GL286223      70021  24 +    132061 I
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=1381655.000000
s hg38.chr6_GL000254v2_alt   944101 296 +   4827813 agaaaaaga------aaaccatagtgtatacagggtttggtactattcatggtttcaaagtatccactggggtggggcgcggtggatcacttcagggcaggaatttgagaccagcctggccaacatggtgaaaccccgtctctactgaaaatacaaaaattagctgggcgtggtggcacg---ctgtagtcccagctgctcaggatgctgaggc---agaattacttgaacccgtgaggtgaaggttgcagtgagccaagactgtgccactgtactccagcctgggtgacagagcgagattctgcctc
s panTro5.chr6             29906894 296 + 175400573 agaaaaaga------aaaccatagtgtatacagggtttggtactattcatggtttcaaagtatccactggggtggggcacggtggatcacttcagggcaggaatttgagaccagcctggccaacatggtgaaaccccgtctctactgaaaatacaaaaattagctgggcgtggtggcacg---ctgtagtcccagctgctcaggatgctgaggc---agaattacttgaacccgtgaggtgaaggttgcaatgagccaagactgtgccactgtactccagcctgggtgacagagtgagattctgcctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30140640 296 + 173848474 agaaaaaga------aaaccatagtgtatacagggtttggtactattcatggtttcaaagtatccactggggtggggcgcggtggatcacttcagggcaggaatttgagaccagcctggccaacatggtgaaaccccgtctctactgaaaatacaaaaattagctgggcgtggtggcacg---ctgtagtcccagctgctcaggatgctgaggc---agaattacttgaacccgtgaggtgaaggttgcagtgagccaagactgtgccactgtactccagcctgggtgacagagtgagattctgcctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5940304 296 +   6154872 agaaaaaga------aaaccatagtgtatacagggtttggtactattcatggtttcaaagtatccactggggtggggcgcggtggatcacttcagggcaggaatttgagaccagcctagccaacatggtgaaaccccgtctctactgaaaatacaaaaattagctgggcgtgatggcacg---ctgtagtcccagctgctcaggatgctgaggc---agaattacttgaacccgtgaggtgaaggttgcagtgagccaagactttgccactgtactccagcctgggtgacagagcgagattctgcctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74657212 297 + 122973662 agaaaaaaa------aa--catagtgtatacaggatttggtactatccatgatttcaaaatatccactggggtggggcgccgtggatcacttgagggcaggaatttgagaccagcctggccaacatgtagaaatgccatctctactgaaaatacaaaaattagctgggcgtggtggcacg---ctgtagtcccagctgctcaggatgctgaggcaggagaattacttgaaccctcgaggtggaggttgcagtgagccaagactgtaccactgcagtccagcctgggtgacaaagcgagattctgactc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30140539 308 + 172585720 agaaaaaaaaacaaaaaaccatagtatatacagagtttggtactgtccgtggtttcaaagtatccactggggtggggcgcggtggatcacttgaggtcaggaatttgagatcaccctggtcaacatggtgaaatcccgtctttattgaaaatacaaaaattagctgggcatggtggcacgtgcctgtagtcccagctgctcaggatgctgaggcagcagaattacttgaacccgtgaggtggagattgcagtgagccaagattgtgccactgcactccagcctgggtgacagagtgagattctgcctc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29803998 308 - 170955103 agaaaaaaacacaaaaaaccatagtatatacagagtttggtactgtccgtggtttcaaagtatccactggggtggggcgcggtggatcacttgaggtcaggaatttgagatcaccctggtcaacatggtgaaatcccgtctttattgaaaatacaaaaattagctgggcatggtggcacgtgcctgtagtcccagctgctcaggatgctgaggcagcagaattacttgaacccgtgaggtggagattgcagtgagccaagattgtgccactgcactccagcctgggtgacagagtgagattctgcctc
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     598336 308 +    766320 agaaaaaaacacaaaaaaccatagtatatacagagtttggtactgtctgtggtttcaaagtatccactggggtggggcgcggtggatcacttgaggtcaggaatttgagatcaccctggtcaacatggtgaaaccccgtctttattgaaaatacaaaacttagctgggcatggtggcacgtgcctgtagtcccagctgctcaggatgctgaggcagcagaattacttgaacccgtgaggtggagattgcagtgagccaagattgtgccactgcactccagcctgggtgacagagtgagattctgcctc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29055483 307 -  71996105 agaaaaaaa-aaaaaaaaccatagtatatacagagtttggtactgtccgtggtttcaaagtatccactgggatggggcacggtggatcacttgaggtcaggaatttgagaccaccctggtcaacatggtgaaaccccgtctgtattgaaaatacaaaaattagctgggcatggtggcacatgcctgtagtcccagctgctcaggatgctgaggcagaagaattacttgaacccgcgaggtggagattgcagtgagccaagattgtgccactgcactccagcctgggtgacagagtgagattctgcctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     265053 308 +    290775 agaaaaaaacacaaaaaaccatagtatatacagagtttggtactgtctgtggtttcaaagtatccactggggtggggcgcggtggatcacttgaggtcaggaatttgagatcaccctggtcaacatggtgaaaccccgtctttattgaaaatacaaaaattagctgggcatggtggcacgtgcctgtagtcccagctgctcaggatgctgaggcagcagaattacttgaacccgtgaggtggagattgcagtgagccaagattgtgccactgcactccagcctgggtgacagagtgagattctgcctc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2693401 305 -   3067355 agaaaaaaa---aaaacaccatagtatatacagagtttggtactatccgtggtttcaaagtatccactggggtggggcacggtggatcacttgaggtcaggaatttgagaccaccctggtcaacatggtgaaacgccgtctctattgaaaatacaaaaattagctgggcatggtggcacgtgcctgtagtcccagctgctcaggatgctgaggcagaagaattacttgaacccgcgaggtggagattgcagtgaaccaagattgtgccactgcactccagcctgggtgacagagtgagattctgcctc
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               200631 1411 + 123392446 I
e mm10.chr17               57982841 546 -  94987271 I
e proCoq1.NW_012152574v1     661350 1403 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e otoGar3.GL873550           170429 335 +  18854210 I
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M
e calJac3.chrUn_GL286223      70021  24 +    132061 I
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=450076.000000
s hg38.chr6_GL000254v2_alt   944397  92 +   4827813 a------aacaacaacaaaaacaaagt------------------------atccactagag-ctcttggaacatatcacctgtggataaggggaaccactgTATAT-ACAGATCTTTGTGAAG
s panTro5.chr6             29907190  92 + 175400573 a------aacaacaacaaaaacaaagt------------------------attcactagag-ctcttggaacatatcacctgtggataaggggaaccactgTATAC-ACAGATCTTTGTGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30140936  92 + 173848474 a------aacaacaacaaaaacaaagt------------------------attcactagag-ctcttggaacacatcacctgtggataaggggaaccactgTATAC-ACAGATCTTTGTGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5940600  92 +   6154872 a------aacaacaacaaaaacaaagt------------------------atccactagag-ctcttggaacatatcacctgtggataaggggaaccactgTATAC-ACAGATCTTTGTGAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74657509  98 + 122973662 aaacaacaacaacaacaaaaacaaagt------------------------atccactagag-gtcttggaacgtatcacctgtgcatacggggaaccactgTATAC-ACAGATCTTTGTAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30140847  92 + 172585720 a------aacaacaacaaaaacaaaat------------------------atccactaggg-gtcttggaacttatcacctgtggataaggggaaccactgTATAC-ACAGATCTTTGTAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29804306  92 - 170955103 a------aacaacaacaaaaacaaaat------------------------atccactaggg-gtcttggaacttatcacctgtggataaggggaaccactgTATAC-ACAGATCTTTGTAAAG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     598644  92 +    766320 a------aacaacaacaaaaacaaaat------------------------atccactaggg-gtcttggaacttatcacctgtggataaggggaaccactgTATAC-ACAGATCTTTGTAAAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29055790  92 -  71996105 a------aacaacaataaaaacaaagt------------------------atccactaggg-gtcttggaacttatcacctgtggataaggggaaccactgTATAC-ACAGATCTTTGTAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     265361  92 +    290775 a------aacaacaacaaaaacaaaat------------------------atccactaggg-gtcttggaacttatcacctgtggataaggggaaccactgTATAC-ACAGATCTTTGTAAAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2693706  92 -   3067355 a------aacaacaataaaaacaaagt------------------------attcactaggg-gtcttggaacttatcacctgtggataaggggaaccactgTATAC-ACAGATCTTTGTAAAG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           170764 114 +  18854210 a------ataaacaatttatacagagttcagtaccagcctttgtttcaggcatccagtggggtgtcttgaaaggaatctgccgtggataagggg----gCTATATAAGATGAATCCTCATAAAG
i otoGar3.GL873550         I 335 I 114
e micMur3.chr6               200631 1411 + 123392446 I
e mm10.chr17               57982841 546 -  94987271 I
e proCoq1.NW_012152574v1     661350 1403 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M
e calJac3.chrUn_GL286223      70021  24 +    132061 I
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=47355.000000
s hg38.chr6_GL000254v2_alt   944489 8 +   4827813 AATACTGC
s panTro5.chr6             29907282 8 + 175400573 AATACTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141028 8 + 173848474 AATACTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5940692 8 +   6154872 AATACTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74657607 8 + 122973662 AATACTGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30140939 8 + 172585720 AATACTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29804398 8 - 170955103 AATACTGC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     598736 8 +    766320 AATACTGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29055882 8 -  71996105 AATACTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     265453 8 +    290775 AATACTGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2693798 8 -   3067355 AATACTGC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           170992 8 +  18854210 AATACTGG
i otoGar3.GL873550         I 114 I 1
e micMur3.chr6               200631 1411 + 123392446 I
e mm10.chr17               57982841 546 -  94987271 I
e proCoq1.NW_012152574v1     661350 1403 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M
e calJac3.chrUn_GL286223      70021 24 +    132061 I
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=7944.000000
s hg38.chr6_GL000254v2_alt   944497 2 +   4827813 TA
s panTro5.chr6             29907290 2 + 175400573 TA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141036 2 + 173848474 TA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5940700 2 +   6154872 TA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74657615 2 + 122973662 TA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30140947 2 + 172585720 TA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29804406 2 - 170955103 TA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     598744 2 +    766320 TA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29055890 2 -  71996105 TA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     265461 2 +    290775 TA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2693806 2 -   3067355 TA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     662753 2 +    730504 TA
i proCoq1.NW_012152574v1   I 1403 C 0
s otoGar3.GL873550           171001 1 +  18854210 T-
i otoGar3.GL873550         I 1 C 0
e micMur3.chr6               200631 1411 + 123392446 I
e mm10.chr17               57982841 546 -  94987271 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M
e calJac3.chrUn_GL286223      70021 24 +    132061 I
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=761100.000000
s hg38.chr6_GL000254v2_alt   944499 120 +   4827813 ACAACCCAAGAGCAATCACTTATTCAGGGCTCACAATGAGCCCAGCACTGGAGTTCCCTGCTCATCCTTGGAAATTTCCTGCTCAGATGC-AAACAT--AGCTGAACTCTCACCTTTTCCTGC
s panTro5.chr6             29907292 120 + 175400573 ACAACCCAAGAGCAATCACTTATTCAGGGCTCACAATGAGCCCAGCACTGGAGTTCCCTGCTCATCCTTGGAAATTTCCTGCTCAGATGT-AAACAT--AGCTGAACTCTCACCTTTTCCTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141038 120 + 173848474 ACAACCCAAGAGCAATCACTTATTCAGGGCTCACAATGAGCCCAGCACTGGAGTTCCCTGCTCATCCTTGGAAATTTCCTGCTCAGATGC-AAACAG--AGCTGAACTCTCACCTTTTCCTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5940702 120 +   6154872 ACAACCCAAGAGCAATCACTTATTCAGGGCTCACAATGAGCCCAGCACTGGAGTTCCCTGCTCATCCTTGGAAATTTCCTGCTCAGATGC-AAACAT--AGCTGAACTCTCACCTTTTCCTGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74657617 120 + 122973662 ACAACCCAAGAGCAATCACTTATTCAGGGCTCACAATGAGCCCAGCACTGGAGTTCCCTGCTCATCCTTGGAAATTTCCTGCTCAGATGC-AAACAT--AGCTGAACTCTCAGCTTTTCCTGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30140949 117 + 172585720 ACAACCCAAGAGCAATCCCTTATTTAGGGCTCACAATGAGCCCAGCACTGGAGTTCCTTGCTCATCCTTGAAAGTTTCCTGCTCAGATGCAAAACATAGAGCTGAAT------CTTTTCCTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29804408 115 - 170955103 ACAACCCAAGAGCAATCCCTTATTTAGGGCTCACAATGAGCCCAGCACTGGAGTTCCTTGCTCATCCTTGAAAATTTCCTGCTCAGATGCAAAACAT--AGCTGAAT------CTTTTCCTGC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     598746 114 +    766320 ACAACCCAAGAGCAATCCCTTATTTAGGGCTCACAATGAGCCCAGCACTGGAGTTCCTTGCTCATCCTTGGAAATTTCCTGCTCAGATGC-AAACAT--AGCTGAAT------CTTTTCCTGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29055892 114 -  71996105 ACAACCCAAGAGCAATCCCTTATTTAGGGCTCACAATGAGCCCAGCACTGGAGTTCCCTGCTCATCCTTGGAAATTTCCTGCTCAGATGC-AAACAT--AGCTGAAT------CTTTTCCTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     265463 114 +    290775 ACAACCCAAGAGCAATCCCTTATTTAGGGCTCACAATGAGCCCAGCACTGGAGTTCCTTGCTCATCCTTGAAAATTTCCTGCTCAGATGC-AAACAT--AGCTGAAT------CTTTTCCTGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2693808 114 -   3067355 ACAACCCAAGAGCAATCCCTTTTTTAGGGCTCACAATGAGCCCAGCACTGGAGTTCCCTGCTCATCCTTGGAAATTTCCTGCTCAGATGC-AAACAT--AGCTGAAT------CTTTTCCTGC
i colAng1.NW_012115566v1   C 0 C 0
s micMur3.chr6               202042 119 + 123392446 ACAACCCAACAGCAGTCGTCTACTCAGGGCTCCGAATGAGCACAGGGCTGGAGCTCCCTGCGCAGCCTTGGAAACCTCCTGCTCTGACGC-AAAGAT--GGCT-GACTCCCGCCTTTTCCTGC
i micMur3.chr6             I 1411 N 0
s proCoq1.NW_012152574v1     662755  99 +    730504 ACAACCCAACAGCAATCACTTGTTTAGGGCTCAGAATGAGCACAGGGCTGGAGTT---------------------TCCTGCTCTGATGC-AAACAT--GGCTGGACACTCACCTTTTCCTGT
i proCoq1.NW_012152574v1   C 0 I 1
s otoGar3.GL873550           171002 118 +  18854210 ACAACCCAACAGCAATAACTT--TCAAGGCTCAAAACCAGCACAGTACTGGAGTTCCCTAATTACCCTTGGAAATTTCCTGCTCTGATGC-AAACAT--GCCCCACCTCCCACCTTTTCCTGT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57982841 546 -  94987271 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M
e calJac3.chrUn_GL286223      70021  24 +    132061 I
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=161941.000000
s hg38.chr6_GL000254v2_alt   944619 25 +   4827813 TGACAGCCACTCACCCACATCT-CCC
s panTro5.chr6             29907412 25 + 175400573 TGACGGCCACTCACCCACATCT-CCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141158 25 + 173848474 TGATGGCCACTCACCCACATCT-CCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5940822 25 +   6154872 TGACAGCCACTCACCCACATCT-CCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74657737 25 + 122973662 CGACAGTCACTCACCCACATCT-CCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141066 26 + 172585720 TGACAGCCACTCACCCACATCTCCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29804523 25 - 170955103 TGACAGCCACTCACCCACATCT-CCC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     598860 25 +    766320 TGATAGCCACTCACCCACATCT-CCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056006 25 -  71996105 TGACAACCACTCACCCACATCT-CCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     265577 25 +    290775 TGATAGCCACTCACCCACATCT-CCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2693922 25 -   3067355 TGACAGCCACTCACCCACATCT-CCC
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     662855 25 +    730504 GGAAGCCCACTCACCCACATCT-CCC
i proCoq1.NW_012152574v1   I 1 I 103
s otoGar3.GL873550           171120 25 +  18854210 TGACAGCCACTCACCTACATCT-CCC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57982841 546 -  94987271 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M
e calJac3.chrUn_GL286223      70021 24 +    132061 I
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=72640.000000
s hg38.chr6_GL000254v2_alt   944644 15 +   4827813 TTACTAGAGATAGAA
s panTro5.chr6             29907437 15 + 175400573 TTACTAGAGATAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141183 15 + 173848474 TTACTAGAGATAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5940847 15 +   6154872 TCACTAGAGACAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74657762 15 + 122973662 TCACTAGAGATAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141092 15 + 172585720 TTACTTGAGATAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29804548 15 - 170955103 TTACTTGAGATAGAA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     598885 15 +    766320 TTACTTGAGATAGAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056031 15 -  71996105 TCACTTGAGATAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     265602 15 +    290775 TTACTTGAGATAGAA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2693947 15 -   3067355 TCACCTGAGACAGAA
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           171145 15 +  18854210 TCCCTCAAGATAGAA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57982841 546 -  94987271 I
e proCoq1.NW_012152574v1     662880 103 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M
e calJac3.chrUn_GL286223      70021 24 +    132061 I
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=14898.000000
s hg38.chr6_GL000254v2_alt   944659 2 +   4827813 AG
s panTro5.chr6             29907452 2 + 175400573 AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141198 2 + 173848474 AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5940862 2 +   6154872 AG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74657777 2 + 122973662 AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141107 2 + 172585720 AG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29804563 2 - 170955103 AG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     598900 2 +    766320 AG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056046 2 -  71996105 AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     265617 2 +    290775 AG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2693962 2 -   3067355 AG
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           171160 2 +  18854210 AG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57983387 2 -  94987271 AG
i mm10.chr17               I 546 C 0
e proCoq1.NW_012152574v1     662880 103 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M
e calJac3.chrUn_GL286223      70021 24 +    132061 I
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=152353.000000
s hg38.chr6_GL000254v2_alt   944661 34 +   4827813 AAAAGAATAAAGACCAA-AAAACCC----------TGTTGACTAT--
s panTro5.chr6             29907454 34 + 175400573 AAAAGAATAAAGACCAA-AAAACCC----------TGTTGACTAT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141200 34 + 173848474 AAAAGAATAAAGACCAA-AAAACCC----------TGTTGACTAT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5940864 34 +   6154872 AAAAGAATAAAGACCAA-AAAACCC----------TGTTGACTAT--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74657779 34 + 122973662 AAAAGAATAAAGACCAA-AAAACCC----------TGTTGACTAT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141109 32 + 172585720 AAAAGAATAAAGACC-A-AAAACCC----------TGTTGGCTA---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29804565 34 - 170955103 AAAAGAATAAAGACCAA-AAAACCC----------TGTTGGCTAT--
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     598902 34 +    766320 AAAAGAATAAAGACCAA-AAAACCC----------TGTTGGCTAC--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056048 33 -  71996105 AAAAGAATAAAGA-CAA-AAAACCC----------TGTTGGCTAT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     265619 34 +    290775 AAAAGAATAAAGACCAA-AAAACCC----------TGTTGGCTAC--
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2693964 34 -   3067355 AAAAGAATAAAGACCAA-AAAACCC----------TGTTGGCTAT--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      70045 43 +    132061 aaacaaaaaaaaaCCAACAAAACCCCCACAAAACTTGTTGGCT----
i calJac3.chrUn_GL286223   I 24 C 0
s otoGar3.GL873550           171162 19 +  18854210 -------------ACAT-AAAAACT----------TATTAATT----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57983389 34 -  94987271 GGAAGCATAAAGGCACA-GAGACTC------------GTGGCCCTTT
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     662880 103 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     288077 1445 -   1771730 M
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=454681.000000
s hg38.chr6_GL000254v2_alt   944695 68 +   4827813 TTTTTCCTTTCACTTTTTGAGAAGTGTTAATAGAACTGAAAATACCAGCAAGGAAAAACGCCCTCGAG
s panTro5.chr6             29907488 68 + 175400573 TTTTTCCTTTCACTTTTTGAGAAGTGTTAATAGAACTGAAAATACCAGCAAGGAAAAACGCCCTTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141234 68 + 173848474 TTTTTCCTTTCACTTTTTGAGAAGTGTTAATAGAACTGAAAATACCAGCAAGGAAAAACGCCCTTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5940898 67 +   6154872 TTTTTCCTTTCAC-TTTTGAGAAGTGTTAATAGAACTGAAAATACCAGCAAGGAAAAACGCCCTCGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74657813 67 + 122973662 TTTTTCCTTTCACTTTTTGAGAAGTGTTAATAGAACTGAAAACA-CAGCAAGGAAAAACGCCCTCGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141141 61 + 172585720 TTTTTCCTTTCAC-TTTTGAGAA-TGTTAATAGATAGTGAAATACCAGCAAGG-AAAACACCC----G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29804599 68 - 170955103 TTTTTCCTTTCACTTTTTGAGAAGTGTTAATAGAAGTGAAAATACCAGCAAGGAAAAACACCCTCGAG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     598936 68 +    766320 TTTTTCCTTTCACTTTTTGAGAAGTGTTAATAGAAGTGAAAATACCAGCAAGGAAAAACACCCTCGAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056081 67 -  71996105 TTTTTCCTTTCACTTTTTGAGAAATGTTAATAGAACTGAAAATACCAGCAAGG-AAAACGACCTCGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     265653 68 +    290775 TTTTTCCTTTCACTTTTTGAGAAGTGTTAATAGAAGTGAAAATACCAGCAAGGAAAAACACCCTCGAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2693998 68 -   3067355 TTTTTCCTTTCACTTTTTGAGAAGTGTTAATAGAACTGAAAATACCAACAAGGAAAAACGCCCTCGAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      70088 66 +    132061 -TTTTCCTTTCACTTTTTGAAAAGTG-TAATAGAACTGAAAATACCAGCAAGGAAAAACGTCCTGGAG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     289570 67 -   1771730 TTTTTCCTTTCACTTTTTGAGAAGTG-TAATAGAACTGAAAATACCAGCAAGGAAAAACGTCCTTGAG
i cebCap1.NW_016107755v1   M 1445 C 0
s otoGar3.GL873550           171181 67 +  18854210 TTTCTTCTTTCATTTTTCAGGAAG-GATAGGGGAATTGAAAATACAATCAAAGAAAAAGGCACTTGAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57983423 58 -  94987271 CTTTTCCTCTCAATTCTTTTGCTACG----------TGAAAGTGCCAGCAAGGAACAAGGCATTCAAG
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     662880 103 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=483370.000000
s hg38.chr6_GL000254v2_alt   944763 62 +   4827813 GAATA-G--AGTTAATTGGATCTCCA--AAATG-TTGTCATGAAAGGTGCATTCCTGGGATATGAATT
s panTro5.chr6             29907556 62 + 175400573 GAATA-G--AGTTAATTGGATCTCCA--AAATG-TTGTCATGAAAGGTGCATTCCTGGGATATGAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141302 62 + 173848474 GAATA-G--AGTTAATTGGATCTCCA--AAATG-TTGTCATGAAAGGTGCATTCCTGGGATATGAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5940965 62 +   6154872 GAATA-G--AGTTAATTGGATCTCCA--AAATG-TTGTCATGAAAGGTGTATTCCTGGGATATGAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74657880 62 + 122973662 GAATA-G--AGTTAATTGGATCTCCA--AAATG-TTGTCATGAAAGCTGCATTCCTGGGATATGAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141202 64 + 172585720 GGATACG--AGTTACATGGATCTCAAACAAATATTTGTCATG-AAGCTGCATTCCTGGGATATG-ATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29804667 62 - 170955103 GAATA-G--AGTTAATTGGATCTCCA--AAATA-TTGTCATGAAAGCTGCATTCCTGGGATATGAATT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     599004 62 +    766320 GAATA-G--AGTTAATTGGATCTCCA--AAATA-TTGTCATGAAAGCTGCATTCCTGGGATATGAATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056148 62 -  71996105 GAATA-G--AGTTAACTGGATCTCCA--AAATA-TTGTCATGAAAGCTGCATTCCTGGGATATGAATt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     265721 62 +    290775 GAATA-G--AGTTAATTGGATCTTCA--AAATA-TTGTCATGAAAGCTGCATTCCTGGGATATGAATT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2694066 62 -   3067355 GAATA-G--AGTTAATTGGATCTCCA--AAATA-TTGCCATGAAAGCTGCATTCCTGGGATATGAATT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      70154 59 +    132061 GAATA-G--AGTTAATTGGATCTCCA--AAATG----TTATGAAAGCTGCATTCCCGGGATACGAATT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     289637 62 -   1771730 GAATA-G--AGTTAACTGGATCTCCA--CAATG-TTATTATGAAAGCTGCATTCCTGGGATATGAATT
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012152574v1     662983 62 +    730504 GAACA-G--AGTTAATTGAATCCCCA--AAAAG-GTGTCATGAAAGCTGCATTCCTGGGATAGGAATT
i proCoq1.NW_012152574v1   I 103 C 0
s otoGar3.GL873550           171248 62 +  18854210 GAACA-G--AGTTAACTGAATCCCCA--GGGAG-TGGTCATGAAAGATGAATTCCTAAGCCATGTGTT
i otoGar3.GL873550         C 0 I 264
s mm10.chr17               57983481 54 -  94987271 GAATC-GCTAGCT--CTGATCCCCAA--AAAAG-TTGCCAGGAAAGCTGCATTCTGAGGT--------
i mm10.chr17               C 0 C 0
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=199071.000000
s hg38.chr6_GL000254v2_alt   944825 31 +   4827813 TGATttccttcctttcttcc-tctctctttct
s panTro5.chr6             29907618 30 + 175400573 TGATttccttcctttcttcc-tctctctttc-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141364 30 + 173848474 TGATttccttcctttcttcc-tctctctttc-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941027 31 +   6154872 TGATttccttcctttcttcc-tctctctttct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74657942 30 + 122973662 TGATttccttcctttcttcc-tctttctttc-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141266 25 + 172585720 TGA-ttccttcctttcttcc-tctttc-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29804729 26 - 170955103 TGATttccttcctttcttcc-tctttc-----
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     599066 26 +    766320 TGATttccttcctttcttcc-tctttc-----
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056210 26 -  71996105 ttatttccttcctttcttcc-tctttc-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     265783 26 +    290775 TGATttccttcctttcttcc-tctttc-----
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2694128 26 -   3067355 TGATtttcttcctttcttcc-tctttc-----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      70213 31 +    132061 TGATTTTCTTCCTTTAttcc-tctctttttct
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     289699 31 -   1771730 TGATtttcttcctttattcc-tctctctttct
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012152574v1     663045 31 +    730504 TGATttacttccttcctttc-tctttctctct
i proCoq1.NW_012152574v1   C 0 I 132
s otoGar3.GL873550           171574 31 +  18854210 TGATTTACTTATTTCctttc-tcttcttctct
i otoGar3.GL873550         I 264 C 0
s mm10.chr17               57983535 28 -  94987271 TGATTTTCTTCCTTCCTTCTGTCTGTCT----
i mm10.chr17               C 0 C 0
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=133480.000000
s hg38.chr6_GL000254v2_alt   944856 20 +   4827813 ttcctctctctccctttcct
s panTro5.chr6             29907648 17 + 175400573 ---ctctctctccctttcct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141394 17 + 173848474 ---ctctctctccctttcct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941058 20 +   6154872 ttcttctctctccctttcct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74657972 17 + 122973662 ---ttctctctccctttcct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141291 17 + 172585720 ---ttctctctccctttcct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29804755 17 - 170955103 ---ttctctctccctttcct
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     599092 17 +    766320 ---ttctctctccctttcct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056236 17 -  71996105 ---ttctctctccctttcct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     265809 17 +    290775 ---ttctctctccctttcct
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2694154 17 -   3067355 ---ttctctctccctttcct
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      70244 20 +    132061 ttcttctccctccctttcct
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     289730 20 -   1771730 ttcttctccctccctttcct
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           171605 18 +  18854210 --tctctctctctccttccc
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57983563 20 -  94987271 CACCTCTCATTATTCTTCCG
i mm10.chr17               C 0 I 4
e proCoq1.NW_012152574v1     663076 132 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=94850.000000
s hg38.chr6_GL000254v2_alt   944876 15 +   4827813 ttc-----ctgtctttcAAA
s panTro5.chr6             29907665 15 + 175400573 ttc-----ctgtctttcAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141411 15 + 173848474 ttc-----ctgtctttcAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941078 15 +   6154872 ttc-----ctgtctttcAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74657989 15 + 122973662 ttc-----ctatctttcAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141308 14 + 172585720 tt------ctatctttcAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29804772 15 - 170955103 ttc-----ctatctttcAAA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     599109 15 +    766320 ttc-----ctatctttcAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056253 15 -  71996105 ttc-----ctatctttcAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     265826 15 +    290775 ttc-----ctatctttcAAA
i manLeu1.NW_012099233v1   C 0 I 2837
s colAng1.NW_012115566v1    2694171 15 -   3067355 ttc-----ctatctttcAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      70264 15 +    132061 ttc-----ctttctttCCAA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     289750 15 -   1771730 ttc-----ctttctttcCAA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           171623 20 +  18854210 ttccctctctttctttctAG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57983583  4 -  94987271 I
e proCoq1.NW_012152574v1     663076 132 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=519613.000000
s hg38.chr6_GL000254v2_alt   944891 74 +   4827813 ACCATTCGCACTCCTTTTATGAGGCATGCA-GAT-CTTGGATTATTCTTCCACTTTCCA--GCCAACTGCAC-TTCAAA
s panTro5.chr6             29907680 74 + 175400573 ACCATTCGCACTCCTTTTATGAGGCATGCA-GAT-CTTGGATTATTCTTCGACTTTCCA--GCCAACTGCAC-TTCAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141426 74 + 173848474 ACCATTCGCACTCCTTTTATGAGGCATGCA-GAT-CTTGGATTATTCTTCCACTTTCCA--GCCAACTGCAC-TTCAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941093 74 +   6154872 ACCATTCGCACTCCTTTTATGAGGCATGCA-GAT-CTTGGATTATTCTTCCACTTTCCA--GCCAACTGCAC-TTCAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74658004 74 + 122973662 ACCATTCACACTCCTTTTATGAGGCATGCA-GAT-CTTGGATTATTCTTCCACTTTCCA--GCCAGCTGCAC-TTCAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141322 74 + 172585720 ACATTTCACA--TCTTTTATGAGGCATGCATGATACTTGGATTA---TTCCACTTTCCAGCGCCAACCGCACGTTCAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29804787 74 - 170955103 ACCATTCACACTCCTTTTATGAGGCATGCA-GAT-CTTGGATTATTCTTCCACTTTCCA--GCCAACCGCAC-TTCAAA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     599124 74 +    766320 ACCATTCACATTCCTTTTATGAGGCATGCA-GAT-CTTGGATTATTCTTTCACTTTCCA--GCCAACTGCAC-TTCAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056268 74 -  71996105 ACCATTCACACTCCTTTTATGAGGCATGAA-GAT-CTTGGATTATTCTTCCACTTTCCA--GCCAACTGCAC-TTCAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     268678 74 +    290775 ACCATTCACACTCCTTTTATGAGGCATGCA-GAT-CTTGGATTATTCTTCCACTTTCCA--GCCAACTGCAC-TTCAAA
i manLeu1.NW_012099233v1   I 2837 C 0
s colAng1.NW_012115566v1    2694186 74 -   3067355 ACCATTCACACTCCTTTTATGAGGCATGCA-GAT-CTTGGATTATTCTTCCACTTTCCA--GCCAACTGCAC-TTCAAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      70279 74 +    132061 ATCATTCACCCTCCTTTGGTGAGGTGTGCA-GAT-CTTGGATTATTCTTCCACTTTCCA--GCCAAATGCAC-TTCGAA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     289765 74 -   1771730 ACCATTCACACTCCTTTTGTGAGGTGTGCA-GAT-CTTGTATTATTCTTCCACTTTTCA--GCCAAATGCAC-TTCAAA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           171643 74 +  18854210 ACTATTCACATTCATTTCATCAGGTATGCA-GAT-CTAGGATTGTTCTTTCCCTTTCTA--ACCAGCTGCAC-TTCAAA
i otoGar3.GL873550         C 0 I 2
e mm10.chr17               57983583  4 -  94987271 I
e proCoq1.NW_012152574v1     663076 132 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=18936.000000
s hg38.chr6_GL000254v2_alt   944965 4 +   4827813 ACAG
s panTro5.chr6             29907754 4 + 175400573 ACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141500 4 + 173848474 ACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941167 4 +   6154872 ACAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74658078 4 + 122973662 ACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141396 3 + 172585720 ACA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29804861 4 - 170955103 ACAG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     599198 4 +    766320 ACAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056342 4 -  71996105 ACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     268752 4 +    290775 ACAG
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2694260 4 -   3067355 ACAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      70353 4 +    132061 ACAC
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     289839 4 -   1771730 ACAC
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               57983583 4 -  94987271 I
e proCoq1.NW_012152574v1     663076 132 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e otoGar3.GL873550           171717 2 +  18854210 I
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=620622.000000
s hg38.chr6_GL000254v2_alt   944969 143 +   4827813 CCTTAATAAggctgggcacggtggctcagcctgtaatcccaacacttggggaggccgaggcgggcggatcac------------------------ctgaggtcaggagtttgagaccagcctgaccaacatgg----acctcgtctctactaaaaatacaaaattatccc
s panTro5.chr6             29907758 143 + 175400573 CCTTAATAAggctgggcacggtggctcaggctgtaatcccaacacttggggaggccgaggcgggcggatcac------------------------ctgaggtcaggagtttgagaccagcctgaccaacatgg----acctcgtctctactaaaaatacaaaattatccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141504 143 + 173848474 CCTTAATAAggctgggcacggtggctcaggctgtaatcccaacacttggggaggccgaggcgggcggatcac------------------------ctgaggtcaggagtttgagaccagcctgaccaacatgg----acctcgtctctactaaaaatacaaaattatccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941171 143 +   6154872 CCTTAATAAggctgggcacggtggctcagcctgtaatcccaacacctggggaggccaaggcgggctgatcac------------------------ctgaggtcgggagtttgagaccagcctgaccaacatgg----acctcgtctctactaaaaatacaaaattatccc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74658082 147 + 122973662 CCTTAATAAgaccgggcacggtggctcagcctgtaatcccaacactttgggaggccgaggcgggcggatcgc------------------------ctgaggtcaggagtttgagaccagcctgaccgacatggagaaactctgtctctactaaaaatacaaaattaccct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141399 143 + 172585720 -CTTAATAAggccgggctcggtggctcagcctgtaatcccaaacctttgtgaggccaaggcgggcggatcac------------------------ctgaggtccggagtttgaa--cagcctgaccaacatggagaaacccc-tctctactaaaattacaaaattagccg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29804865 146 - 170955103 CCTTAATAAggccgggctcggtggctcagcctgtaatcccaacactttgtgaggccaaggcgggcggatcac------------------------ctgaggtccggagtttgagaccagcctgaccaacatggagaaacccc-tctctactaaaattacaaaattagccg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     599202 146 +    766320 CCTTAATAAggccgggcacggtggctcagcctgtaatcccaacactttgtgaggccgaggcgggcggatcac------------------------ctgaggtccggagtttgaggccagcctgaccaacatggagaaacccc-tctctactaaaattacaaaatgagccg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056346 147 -  71996105 CCTTAATAAggccgggcacggtggctcagcctgtaatcccaacactttgtgaggccgaggcgggcggatcac------------------------ctgaggtcgggagtttgagattagcctgaccaacatggagaaaccctgtctctactaaaattacaaaatgagctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     268756 170 +    290775 CCTTAATAAggccgggctcggtggctcagcctgtaatcccaacactttgtgaggccaaggcgggcggatcacctgaggtccggagtttgaggccagctgaggtccggagtttgaggccagcctgaccaacatggagaaaccct-tctctactaaaattacaaaatgagccg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2694264 146 -   3067355 CTTTAATAAggccgggcacggtggctcagcctgtaatcccaacactttgtgaggccgaggcggacggatcac------------------------ctgaggtccggagtttgagaccagcctgaccaacatggagaaacccc-tctctactaaaattacaaaatgagccg
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57983583   4 -  94987271 I
e proCoq1.NW_012152574v1     663076 132 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e otoGar3.GL873550           171717   2 +  18854210 I
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     289843   0 -   1771730 C
e calJac3.chrUn_GL286223      70357   0 +    132061 C
e macNem1.NW_012011356v1    2848942 3512 -   2996164 I

a score=467547.000000
s hg38.chr6_GL000254v2_alt   945112 82 +   4827813 ggcgtggtggcgcatgcctgtaatcgtagctactagggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttg
s panTro5.chr6             29907901 82 + 175400573 ggcgtggtggcgcatgcctgtaatcgcagctactagggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141647 82 + 173848474 ggcgtggtggcgcatgcctgtaatcgcagctactagggaggctgaggcaggagaatcgcttgaacccggaaggcagaggttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941314 82 +   6154872 ggcatggtggcgcatgcctgtaatcgcagctactagggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74658229 77 + 122973662 ggcgtggt-----atgtctgtaatcccagctactagggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141542 82 + 172585720 ggcgtggtggcgcatgcctgtaatcccagctattcgggaggctgaggcaggagaatcgcttgaacccgggaggctgaggttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29805011 82 - 170955103 ggcgtggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggctgaggttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2852454 82 -   2996164 ggcgtggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggctgaggttg
i macNem1.NW_012011356v1   I 3512 C 0
s cerAty1.NW_012002711v1     599348 82 +    766320 ggcgtggtggcgcatgcctgtaatcccagctactcgggagtctgaggcaggagaatcgcttgaacccgggaggcggaggttg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056493 82 -  71996105 ggcgtggtggcgggtgcctgtaatcccagttactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     268926 82 +    290775 ggcgtggtggcgcatgcctgtaatcccagctattcgggagtctgaggcaggagaatcgcttgaacccgggaggcggaggttg
i manLeu1.NW_012099233v1   C 0 T 9429
s colAng1.NW_012115566v1    2694410 82 -   3067355 ggtgtggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacacgggaggcggaggttg
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57983583  4 -  94987271 I
e proCoq1.NW_012152574v1     663076 132 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e otoGar3.GL873550           171717  2 +  18854210 I
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     289843  0 -   1771730 C
e calJac3.chrUn_GL286223      70357  0 +    132061 C

a score=303037.000000
s hg38.chr6_GL000254v2_alt   945194 75 +   4827813 cggtgagcggagatcgcgccattgcactccagccagggaaatgagagtgaaactccgtctcaaaaacaaacaaac
s panTro5.chr6             29907983 75 + 175400573 cggtgagcggagatcgcgccattgcacaccagccagggaaacgagagtgaaactccgtttcaaaaacaaacaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141729 75 + 173848474 cggtgggcggagatcgcgccattgcacaccagccagggaaacgagagtgaaactccgtttcaaaaacaaacaaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941396 75 +   6154872 cggtgagcggagatcgcgccattgcactccagccagggaaacgagagtgaaactccgtctcaaaaacaaacaaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74658306 75 + 122973662 caatgagccgagatggcgccattgcattccagccagggcaacaagagcgaaactccgtctcaaaaaaaaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141624 73 + 172585720 cagtgagccgagatcgcgccactgcattccagccagggcaacaagagcgaaactccgtctcaaaaacaacaac--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29805093 73 - 170955103 cagtgagccgagatcgcgccactgcattccagccagggcaacaagagcgaaactccgtctcaaaaacaacaac--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2852536 73 -   2996164 cagtgagccgagatcgcgccattgcattccagccagggcaacaagagcgaaactccgtctcaaaaacaacaac--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     599430 73 +    766320 cagtgagccgagatcgcgccactacattccagccagggcaacaagagcgaaactccgtctcaaaaacaacaac--
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056575 73 -  71996105 cagtgagccgagatcgcgccactgcattccagccagggcaacaagagcgaaactccgtctcaaaaacaacaac--
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2694492 75 -   3067355 cagtgagccgaaatcgcgccgctgcactccagccagggcaccaagagcgaaactccgtctcaaaaacaacaacaa
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57983583  4 -  94987271 I
e proCoq1.NW_012152574v1     663076 132 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e otoGar3.GL873550           171717  2 +  18854210 I
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     289843  0 -   1771730 C
e calJac3.chrUn_GL286223      70357  0 +    132061 C
e manLeu1.NW_012099233v1     269008 9429 +    290775 T

a score=-7488.000000
s hg38.chr6_GL000254v2_alt   945269 22 +   4827813 aaacaaacaaacaaaAA---AAAAC
s panTro5.chr6             29908058 17 + 175400573 aaacaaacaaacaaaA--------C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141804 25 + 173848474 aaacaaacaaacaaacaaacaaaAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941471 25 +   6154872 aaacaacaacaacaaCAAAAAAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74658381 25 + 122973662 aaaaagaaagaaaaaaAGAAAAACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141697 10 + 172585720 ---------------aacaaaaaCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29805166 10 - 170955103 ---------------aacaaaaaCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2852609 10 -   2996164 ---------------aacaaaaaCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     599503 10 +    766320 ---------------aacaaaaaCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056648  4 -  71996105 ---------------------aaCA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2694567 20 -   3067355 caaca-----acaacaacaaaaaca
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57983587 22 -  94987271 --aaaaaaaaaaaaaaaaaaaaaC-
i mm10.chr17               I 4 C 0
e proCoq1.NW_012152574v1     663076 132 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e otoGar3.GL873550           171717  2 +  18854210 I
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     289843  0 -   1771730 C
e calJac3.chrUn_GL286223      70357  0 +    132061 C
e manLeu1.NW_012099233v1     269008 9429 +    290775 T

a score=4909.000000
s hg38.chr6_GL000254v2_alt   945291 1 +   4827813 G
s panTro5.chr6             29908075 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141829 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941496 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74658406 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141707 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29805176 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2852619 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     599513 1 +    766320 G
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056652 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2694587 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550           171719 1 +  18854210 A
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               57983609 1 -  94987271 A
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     663076 132 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e cebCap1.NW_016107755v1     289843 0 -   1771730 C
e calJac3.chrUn_GL286223      70357 0 +    132061 C
e manLeu1.NW_012099233v1     269008 9429 +    290775 T

a score=8666.000000
s hg38.chr6_GL000254v2_alt   945292 1 +   4827813 C
s panTro5.chr6             29908076 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141830 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941497 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74658407 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141708 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29805177 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2852620 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     599514 1 +    766320 C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056653 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2694588 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      70357 1 +    132061 C
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     289843 1 -   1771730 C
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           171720 1 +  18854210 C
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57983610 1 -  94987271 T
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     663076 132 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e saiBol1.JH378388            22819 4765 -    110772 M
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e manLeu1.NW_012099233v1     269008 9429 +    290775 T

a score=113236.000000
s hg38.chr6_GL000254v2_alt   945293 16 +   4827813 CTTAGTAACAGTGCCT
s panTro5.chr6             29908077 16 + 175400573 CTTAGTAACAGTGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141831 16 + 173848474 CTTAGTAACAGTGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941498 16 +   6154872 GTTAGTAACAGTGCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74658408 16 + 122973662 CTTAGTAACAGCTCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141709 16 + 172585720 CTTAGTAACAATGCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29805178 16 - 170955103 CTTAGTAACAATGCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2852621 16 -   2996164 CTTAGTAACAATGCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     599515 16 +    766320 CTTAGTAACAATGCCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056654 16 -  71996105 CTTAGTAACAATGCCC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2694589 16 -   3067355 CTTAGTAACAATGCCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      70358 16 +    132061 CTTAGTATCATTGCCC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            27592 16 -    110772 CTTAGCATCAGTGCCT
i saiBol1.JH378388         M 4765 C 0
s cebCap1.NW_016107755v1     289844 16 -   1771730 CTTAGTATCAGTGCCC
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           171721 14 +  18854210 CTCAGCGACTGTCC--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57983611 14 -  94987271 --TCCAAACAGTGTCT
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     663076 132 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e manLeu1.NW_012099233v1     269008 9429 +    290775 T

a score=307879.000000
s hg38.chr6_GL000254v2_alt   945309 30 +   4827813 TCAAGAACCTGGCCTTCCAGTTCTCTGGCA
s panTro5.chr6             29908093 30 + 175400573 TCAAGAACCTGGCCTTCCAGTTCTCTGGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141847 30 + 173848474 TCAAGAACCTGGCCTTCCAGTTCTCTGGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941514 30 +   6154872 TCAAGAACCTGGCCTTCCAGTTCTCTGGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74658424 30 + 122973662 TCAAGAACCTGGCCTTCTAGTTCTCTGGCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141725 30 + 172585720 TCAAGAACCTGGTCTTCCAGTTATCTGGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29805194 30 - 170955103 TCAAGAACCTGGTCTTCCAGTTATCTGGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2852637 30 -   2996164 TCAAGAACCTGGTCTTCCAGTTATCTGGCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     599531 30 +    766320 TCAAGAACCTGGTCTTCCAGTTATCTGGCG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056670 30 -  71996105 TCAAGAACCTGGTCTTCCAGTTATCTGGCA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2694605 30 -   3067355 TCAAGAACCTGGTCTTCCAGTTATCTGGCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      70374 30 +    132061 TCAAGAACCTGACCTTCCAGTTCTCCGGCA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            27608 30 -    110772 TCAAGAACCTGACCTTCCAGTTCTCCGGCA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     289860 30 -   1771730 TCAAGAACCTGACCTTCCAGTTCTCCGGCA
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012152574v1     663208 30 +    730504 TCAAGGACCTGGCCTTCCAGTTTTGCAGCA
i proCoq1.NW_012152574v1   I 132 C 0
s otoGar3.GL873550           171735 30 +  18854210 TGGAGGACCTGGCCTTCCAGTTCTCCAGCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57983625 30 -  94987271 TCCAGGACCTGTCCATACAGTTCTATGCTA
i mm10.chr17               C 0 C 0
e canFam3.chr35            26271502 553 +  26524999 I
e aotNan1.NW_018509740v1     359326 739 -    457564 M
e manLeu1.NW_012099233v1     269008 9429 +    290775 T

a score=13600.000000
s hg38.chr6_GL000254v2_alt   945339 1 +   4827813 G
s panTro5.chr6             29908123 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141877 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941544 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74658454 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141755 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29805224 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2852667 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     599561 1 +    766320 G
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056700 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259579 1 +    290775 G
i manLeu1.NW_012099233v1   T 9429 C 0
s colAng1.NW_012115566v1    2694635 1 -   3067355 G
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      70404 1 +    132061 G
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            27638 1 -    110772 G
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     289890 1 -   1771730 G
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           171765 1 +  18854210 G
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57983655 1 -  94987271 G
i mm10.chr17               C 0 I 427
e proCoq1.NW_012152574v1     663238 0 +    730504 C
e canFam3.chr35            26271502 553 +  26524999 I
e aotNan1.NW_018509740v1     359326 739 -    457564 M

a score=1021945.000000
s hg38.chr6_GL000254v2_alt   945340 101 +   4827813 AGAAGACCTACTGCTGCCGCTAGTCCTCAAGATGG-CATTTGCTGGAGGCGGTAGGCAGAGGCCCTAAG-------TGTGGATTCTAAC----CCCCGTGGGGACTGAATCTC
s panTro5.chr6             29908124 101 + 175400573 AGAAGACCTACTGCTGCCGCTAGTCCTCAAGATGG-CATTTGCTGGAGGCGGTAGGCAGAGGCCCTAAG-------TGTGGATTCTAAC----CCCCGTGGGGACTGAATCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141878 101 + 173848474 AGAAGACCTACTGCTGCCGCTAGTCCTCAAGATGG-CATTTGCTGGAGGCGGTAGGCAGAGGCCCTAAG-------TGTGGATTCTAAC----CCCCGTGGGGACTGAATCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941545 101 +   6154872 AGAAGACCTACTGCTGCCGCTAGTCCTCAAGATGG-CATTTGCTGGAGGCGGTAGGCAGAGGCCCTAAG-------TGTGGATTCTAAC----CCCCGTGGGGACTGAATCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74658455 108 + 122973662 AGAAGACCTACTGCTGCCGCTAGTCCTCAAAATGG-CATTTGCTGGAGGCGGTAGGAAGAGGCCCTAGGTCCTAACTGTGGATCCTAAC----CCCCGTGGGGACTGAATCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141756 101 + 172585720 AGAAGACCTACTGCTGCCGCTAGTCCTCAAGATGGCCATTTGCTGGAGGCGGTAGGAAGAGGCCCGAAG-------TGTGACT-CTAAC----CCCTGTGGGGACTGAATCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29805225 101 - 170955103 AGAAGACCTACTGCTGCCGCTAGTCCTCAAGATGGCCATTTGCTGGAGGCGGTAGGAAGAGGCCCGAAG-------TGTGACT-CTAAC----CCCTGTGGGGACTGAATCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2852668 101 -   2996164 AGAAGACCTACTGCTGCCGCTAGTCCTCAAGATGGCCATTTGCTGGAGGCGGTGGGAAGAGGCCCGAAG-------TGTGACT-CTAAC----CCCTGTGGGGAATGAATCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     599562 102 +    766320 AGAAGACCTACTGCTGCCGCTAGTCCTCAAGATGGCCATTTGCTGGAGGCGGTAGGAAGAGGCCCGAAG-------TGTGACTCCTAAT----CCCTGTGGGGACTGAATCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056701 101 -  71996105 AGAAGACCTACTGCTGCCGCTAGTCCTCAAGATGGCCATTTGCTGGAGGCGGTAGGAAGAGGCCCGAAG-------TGTGACT-CTAAC----CCCTGTAGGGACTGAATCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259580 102 +    290775 AGAAGACCTACTGCTGCCGCTAGTCCTCAAGATGGCCATTTGCTGGAGGCGGTAGGAAGAGGCCCGAAG-------TGTGACTCCTAAC----CCCTGTGGGGACTGAATCTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2694636 102 -   3067355 AGAAGATCTACTGCTGCCGCTAGTCCTCAAGATGGCCATTTGCTGGAGGCGGTAGGAAGAGGCCCGAAG-------TGTGACTCCTAAC----CCCTGTGGGGACTGAATCTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      70405 101 +    132061 AGAAGACCTGCTGCTGCCGCTAGTCCTCAAGATGG-CATTTGCTGGAGGCGGTAGGAAGAGGCCCTCGG-------TGAGGATCCTAAC----CCCTGGGGGCACTGAATCTC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            27639 101 -    110772 AGAAGACCTACTGCTGCCGCTAGTCCTCATGATGA-CATTTGCTGGAGGCGGTAGGAAGAGGCCCTCCG-------TGAGGATCCTAAC----CCCTGTGGGAACTGAATCTC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     289891 101 -   1771730 AGAAGACCTACTGCTGCCGCTAATCCTCAAGATGG-CATTTGCTGGAGGCGGTAGGAAGAGGCTCTCGG-------TGAGGATCCTAAC----CCCTGGGGGGACTGAATCTC
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012152574v1     663238 100 +    730504 GGAAGACCCACTGCAGTCACTAGTCCTCCAGATGG-CGTTTGCTGGGTGTGGTAGGAAGAGGCCTTTGG-------TACAGATTCTAAC----CCCTGC-GGGACTGAATCTC
i proCoq1.NW_012152574v1   C 0 I 194
s otoGar3.GL873550           171766  98 +  18854210 GGAAGACCCACTGTAGTCTCTAGTCCTCAAGATGG-CATTTGCTGGG-ATAGGAGGAAGAAGC-------------TGCAGATCCTAACTAATCCCTGTGGGGACTGAATCTC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57983656 427 -  94987271 I
e canFam3.chr35            26271502 553 +  26524999 I
e aotNan1.NW_018509740v1     359326 739 -    457564 M

a score=1390301.000000
s hg38.chr6_GL000254v2_alt   945441 157 +   4827813 -TGCGGCTGTTGCTTGCCCAGGCACGTTTGCCTCCCATGAACTTCCTTCATCCACA-GGGCCCCAAACCTCATGCCGGCGGGAGGA-GGAAGGAGACTGGGCATAACTCATCAGA--CTTTCGACTGT-AAGAGCTGGAGGCCG-CCTGCGGGCTTATCTGTAC
s panTro5.chr6             29908225 158 + 175400573 -TGCGGCTGTTGCTTGCCCAGGCACGTTTGCCTCCCATGAACTTCCTTCAACCACA-GGGCCCCAAACCTCATGCCGGCGGGAGGA-GGAAGGAGACTGGGCATAACTCATCAGA--CTTTCGACTGTTAAGAGCTGGAGGCCG-CCTGCGGGCTTATCTGTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30141979 158 + 173848474 -TGCGGCTGTTGCTTGCCCAGGCACGTTTGCCTCCCATGAACTTCCTTCAACCACA-GGGCCCCAAACCTCATGCCGGCGGGAGGA-GGAAGGAGACTGGGCATAACTCATCAGA--CTTTCGACTGTTAAGAGCTGGAGGCCG-CCTGCGGGCTTATCTGTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941646 157 +   6154872 -TGCAGCTGTTGCTTGCCCAGGCACGTTTGCCTCCCATGAACTTCCTTCATCCACA-GGGCCCCAAACCTCATGCCGGCGGGAGGA-GGAAGGAGACTGGGCATAACTCATCAGA--CTTTCGACTGT-AAGAGCCGGAGGCCG-CCTGCGGGCTTATCTGTAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74658563 158 + 122973662 -TGCAGCTGTTGCTTGCCCAGGCACGTTTGCCTCCCATGAACTTCCTTCATCCACG-GGGCCCCAGACCTCATACCGGCGGGAGGA-GGAAGGAGACTGGGCATAACTCATCAGA--CTTTCGACTGT-AAGGGCTGGAGTCCGCCCTGTGGGCTTATCTGTAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30141857 157 + 172585720 -TGCAGCTGTTGCTTGCCCAGGTACGTTTGCCTCCCATGAACTTCCTTCGTCCACG-GGGCCCCAGACCTCAGGCCGGCGGGAGGA-GGAAGGCGACTGGGCATAACTCATCATA--CTTTCGACTGT-AAGAGCTGGAGGCCG-CCTGCAGGCTTATCTGTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29805326 157 - 170955103 -TGCAGCTGTTGCTTGCCCAGGTACGTTTGCCTCCCATGAACTTCCTTCGTCCACG-GGGCCCCAGACCTCAGGCCGGCGGGAGGA-GGAAGGCGACTGGGCATAACTCATCATA--CTTTCGACTGT-AAGAGCTGGAGGCCG-CCTGCAGGCTTATCTGTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2852769 157 -   2996164 -TGCAGCTGTTGCTTGCCCAGGTACGTTTGCCTCCCATGAACTTCCTTCGTCCACG-GGGCCCCAGACCTCAGGCCGGCGGGAGGA-GGAAGGCGACTGGGCATAACTCGTCATA--CTTTCGACTGT-AAGAGCTGGAGGCCG-CCTGCAGGCTTATCTGTAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     599664 157 +    766320 -TGCAGCTGTTGCTTGCCCAGGTACGTTTGCCTCCCATGAACTTCCTTCGTCCACG-GGGCCCCAGACCTCAGGCCGGCGGGAGGA-GGAAGGCGACTGGGCATAACTCATCAGA--CTTTCGACTGT-AAGAGCTGGAGGCCG-CCTGCGGGCTTATCTGTAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056802 157 -  71996105 -CGCAGCTGTTGCTTGCCCAGGCACGTTTGCCTCCCATGAACTTCCTTCGTCCACG-GGGTCCCAGACCTCAGGCCGGCGGGAGGA-GGAAGGCGACTGGGCATAACTCATCAGA--CTTTCGACTGT-AAGAGCTGGAGGCCG-CCTGCGGGCTTATCTGTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259682 157 +    290775 -TGCAGCTGTTGCTTGCCCAGGTACGTTTGCCTCCCATGAACTTCCTTCGTCCACG-GGGCCCCAGACCTCAGGCCGGCGGGAGGA-GGAAGGCGACTGGGCATAACTCATCAGA--CTTTCGACTGT-AAGAGCTGGAGGCCG-CCTGCGGGCTTATCTGTAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2694738 157 -   3067355 -TGCAGCTGTTGCTTGCCCAGGCACGTTCGCCGCCCATGAACTTCCTTCGTCCACG-GGGCCCCAGATCTCAGGCCGGCGGGAGGA-GGAAGGAGACTGGGCATAATTCATCAGA--CTTTCGACTGT-AAGAGCTGGAGGCCG-CCTGCGGGCTTATCTGTAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      70506 156 +    132061 -TGCAGCTGTTTCTTTCCCAGGCACATCTGCCTCCCAAGAACTTCCTTCATCTCCA--GGCCCCAGACTTCGGGCCGTGGGGAGGG-GGAAGGAGACTGGGCACAATTCATCAGA--CTTTCGGCTGT-AAGAGCTGGAGGTCA-CCTGCGGGCTTATCTGTAC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            27740 156 -    110772 -TGCAGCTGTTGCTTGCCCAGGCACATTTGCCTCCCAAGAACTTCCTTCCTCTCCA--GGCCTCAGACTTTGGGCCGTGGGGAGGG-GGAAGGAGACTGGGCATAACTCATCAGA--CTTTCGGCTGT-AAGAGCTGGAGGTCA-CCTGGGGGCTTATCTGTTC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     289992 156 -   1771730 -TGCAGCTGTTGCTTGCTCAGGCACATTTGCCTCCCAAGAACTTCCTTCATCTCCA--GGCCCCAGACTTCGGGCCGTGGGGAGGT-GGAAGGAGACTGGGCACAGTTCATTAGA--CTTTCGGCTGT-AAGAGCTGGAGGTCA-CCCGCGGGCTTATCTGTAC
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           171864 153 +  18854210 GGGAACCTGGTACTAACT------TTCTTGTCACCCCC--ACCCTATTTATCTCTAAGGGCCCCAGGGCTCAACCAGGCTAGAGGGTAGAAGGAAA--AGGTAAAATTCACCAGATTCTGTAGGTTGTTAGGGTCTGGAGGTTG-TCTGAGGGCTTATCTGGAC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               57983656 427 -  94987271 I
e proCoq1.NW_012152574v1     663338 194 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e aotNan1.NW_018509740v1     359326 739 -    457564 M

a score=102893.000000
s hg38.chr6_GL000254v2_alt   945598 11 +   4827813 CCGGGCCTGTC
s panTro5.chr6             29908383 11 + 175400573 CCGGGCCTGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30142137 11 + 173848474 CCGGGCCTGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941803 11 +   6154872 CCGGGCCTGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74658721 11 + 122973662 CGGGGCCTGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30142014 11 + 172585720 CTGGGCCTGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29805483 11 - 170955103 CTGGGCCTGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2852926 11 -   2996164 CTGGGCCTGTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     599821 11 +    766320 CTGGGCCTGTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056959 11 -  71996105 CTGGGCCTGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259839 11 +    290775 CTGGGCCTGTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2694895 11 -   3067355 CTGGGCCTGTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      70662 11 +    132061 CCGGGCCTATC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            27896 11 -    110772 CCGGGCCTATC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     290148 11 -   1771730 CCGGGCCTATC
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           172017  8 +  18854210 CCAGCCTC---
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57984083 11 -  94987271 CCAGGCCTGGC
i mm10.chr17               I 427 C 0
e proCoq1.NW_012152574v1     663338 194 +    730504 I
e canFam3.chr35            26271502 553 +  26524999 I
e aotNan1.NW_018509740v1     359326 739 -    457564 M

a score=1011548.000000
s hg38.chr6_GL000254v2_alt   945609 81 +   4827813 CCCACCCTTCCAGAATGTAAATCCTCTGAGGGAATGTGTCGTCGCCATCTTTCAGTCCTTTGAGTGCACCCAGTCTCTCTC
s panTro5.chr6             29908394 81 + 175400573 CCCACCCTTCCAGAATGTAAATCCTCTGAGGGAATGTGTCGTCGCCATCTTTCAGTCCTTTGAGTGCACCCAGTCTCTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30142148 81 + 173848474 CCCACCCTTCCAGAATGTAAATCCTCTGAGGGAATGTGTCGTCGCCATCTTTCAGTCCTTTGAGTGCACCCAGTCTCTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941814 81 +   6154872 CCCACCCTTCCAGAATGTAAATCCTCTGAGGGAATGTGTCGTCGCCATCTTTCAGTCCTTTGAGTGCACCCAGTCTCTCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74658732 81 + 122973662 CCCACCCTTCCAGAATGTAAATCCTCTGAGGGAATGTGTCGTCGCCATCTTTCAGTCCTTTGAGTGCACCCAATCTCTCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30142025 81 + 172585720 CCCACCCTTCCAGAATGTAAATCCTCTGAGAGAATGTGTCGTCGCCATCTTTCAGTCCTTTGAGTGCACCCAATCTCTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29805494 81 - 170955103 CCCACCCTTCCAGAATGTAAATCCTCTGAGAGAATGTGTCGTCGCCATCTTTCAGTCCTTTGAGTGCACCCAATCTCTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2852937 81 -   2996164 CCCACCCTTCCAGAATGTAAATCCTCTGAGAGAATGTGTCGTCGCCATCTTTCAGTCCTTTGAGTGCACCCAATCTCTCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     599832 81 +    766320 CCCACCCTTCCAGAATGTAAATCCTCTGAGGGAATGTGTCGTCGCCATCTTTCAGTCCTTTGAGTGCACCCAATCTCTCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29056970 81 -  71996105 CCCACCCTTCCAGAATGTAAATCCTCTGAGGGAATGTGTCGTCGCCATCTTTCAGTCCTTTGAGCGCACCCAATCTCTCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259850 81 +    290775 CCCACCCTTCCAGAATGTAAATCCTCTGAGGGAATGTGTCGTCGCCATCTTTCAGTCCTTTAAGTGCACCCAATCTCTCTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2694906 81 -   3067355 CCCACCCTTCCAGAATGTAAATCCTCTGAGGGAATGTGTCGTCGCCATCTTTCAGTCCTTTGAGTGCACCCAATCTCTCTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      70673 81 +    132061 CCTACCCTTTCAGAATGTAAATCCTCTGAGGTAATGTGTCGTCGCCATCTTTTAGTTCTTTGAGTTCACCCAATCTCTCTC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            27907 81 -    110772 CCCACCCTTCCAGAATGTAAATGCTCTGAGGGAATGTGTCGTCGCCATCTTTTAGTCCTTTGAGTTCACCCAATCTCTCTC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     290159 81 -   1771730 CCCACCCTTCCGGAATGTAAATCCTCTGAGGGAATGTGTCGTCGCCATCTTTTAGTCCTTTGAGTTCACACAATCTCTCTC
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012152574v1     663532 77 +    730504 cccgcccttctagaatgtaaatcccctgagggA---TGT-GTCGCCATCTTCCAGTCCTTTGAGTGCCCCCAATCTCTCTC
i proCoq1.NW_012152574v1   I 194 I 483
s otoGar3.GL873550           172025 77 +  18854210 CCCGCCCTTTTAGAAAGTAAATCCCCTGAGGTA---TGT-GCCGCCATCTTCCAGTCTTTTGAGTACACCCAATCTCTTTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57984094 69 -  94987271 CTCACCCTTCCACTGGGTAAATTTCTGGAGGGACTGTGCAGACG---TCTCTCAACCC--TGAGTGCACTC---CTC----
i mm10.chr17               C 0 C 0
s canFam3.chr35            26272055 77 +  26524999 CCCGCCCTCCCAGAGCCTAAATCCCCCCAGGGAATGTGT---CGCCATCTTCCC-TCCCCAGAGAGCACCCACCTCCTCTC
i canFam3.chr35            I 553 C 0
e aotNan1.NW_018509740v1     359326 739 -    457564 M

a score=315036.000000
s hg38.chr6_GL000254v2_alt   945690 36 +   4827813 CAACCCAAA--ACCCT-------TTAT-----CCACAACAATTCTGAGAA
s panTro5.chr6             29908475 36 + 175400573 CAACCCAAA--ACCCT-------TTAT-----CCACAGCAATTCTGAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30142229 36 + 173848474 CAACCCAAA--ACCCT-------TTAT-----CCACAGCAATTCTGAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941895 36 +   6154872 CAACCCAAA--ACCCT-------TTAT-----CCACAGCAATTCTGAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74658813 36 + 122973662 TAACCCAAA--ACCCT-------TTAT-----CCACAGCAATTCTGAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30142106 40 + 172585720 CAACCCAAA--ACCCT-------CTATCCACACCACAGCAATTCTGAGA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29805575 40 - 170955103 CAACCCAAA--ACCCT-------CTATCCACACCACAGCAATTCTGAGA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2853018 40 -   2996164 CAACCCAAA--ACCCT-------CTATCCACACCACAGCAATTCTGAGA-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     599913 35 +    766320 CAACCCAAA--ACCCT-------CTAT-----CCACAGCAATTCTGAGA-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29057051 35 -  71996105 CAACCCAAA--ACTCT-------CTAT-----CCACAGCAATTCTGAGA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259931 35 +    290775 CAACCCAAA--ACCCT-------CTAT-----CCACAGCAATTCTGAGA-
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2694987 35 -   3067355 CAACCCAAA--ACTCT-------CTAT-----CCACAGCAATTCTGAGA-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      70754 35 +    132061 CAACCCGAA--ACTCT-------TTAT-----CCACAGCAATTCTGAGA-
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            27988 36 -    110772 CAACCCAAG--ACTCT-------TTAT-----CCACAGCAATTCTGAGAA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     290240 36 -   1771730 CAGCTCAAA--ACTGT-------TTAT-----CCACAGCAATTCTGAGAA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           172102 43 +  18854210 CAACCTCAA--ACTCTTCGATTGTTTC-----CCACAGCAATTTTGAAAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57984163 37 -  94987271 CAACTAAAG--CCCAT-------TCAT-TGTTTCA---CAAATCTGAGGA
i mm10.chr17               C 0 I 5364
s canFam3.chr35            26272132 44 +  26524999 CAACCTGAACTACCGT-CAGCAGCTTC-----CCACGGCAATTCTGAAAA
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012152574v1     663609 483 +    730504 I
e aotNan1.NW_018509740v1     359326 739 -    457564 M

a score=2188247.000000
s hg38.chr6_GL000254v2_alt   945726 254 +   4827813 TGATGAGAATCCCCCTCACCCCTCA-CACCGCAAACAGTTGCAATGCTTAGTGGGATTCACCCTTGTCGTCACCAACCCTGCTACTCCAGCCACGTGAGTTTTCCGCCTGTCAGCCAAGCAAAATGGCCTTCCTGCAGTCGC---------ACGGCCC-TTTGGTCTCTGCTCAGGGCTTCGGGGACCCTTTCCAGCCATTGCCCTGCACCTACCCACCAGATCGCCGCCCTGGTGGGCGCTCCTGGCCCTGTCC-TCCGCGCTTA
s panTro5.chr6             29908511 254 + 175400573 TGATGACAATCCCCCTCACCCCTCA-CACCGCAAACAGTTGCAATGCTTAGTGGGATTCACCCTTGTCGTCACCAACCCTGCTACTCCAGCCACGTGAGTTTTCCGCCTGTCAGCCAAGCAAAATGGCCTTCCTGCAGTCGC---------ACGGCCC-TTTGGTCTCTGCTCAGGGCTTCAGGGACCCTTTCCAGCCATTGCCCTGCACCTACCCACCAGATCGCCGCCCTGGTGGGCGCTCCTGGCCCTGTCC-TCCGCGCTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30142265 254 + 173848474 TGATGAGAATCCCCCTCACCCCTCA-CACCGCAAACAGTTGCAATGCTTAGTGGGATTCACCCTTGTCGTCACCAACCCTGCTACTCCAGCCACGTGAGTTTTCCGCCTGTCAGCCAAGCAAAATGGCCTTCCTGCAGTCGC---------ACGGCCC-TTTGGTCTCTGCTCAGGGCTTCAGGGACCCTTTCCAGCCATTGCCCTGCACCTACCCACCAGATCGCCGCCCTGGTGGGCGCTCCTGGCCCTGTCC-TCCGCGCTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5941931 254 +   6154872 TGATGAGAATCCCCCTCACCCCTCA-CACCGCAAACAGTTGCAATGCTTAGTGGGATTCACCCTTGTCGTCACCAACCCTGCTACTCCAGCCACGTGAGTTTTCCGCCTGTCAGCCAAGCAAAATGGCCTTCCTGCAGTCGC---------ACGGCCC-TTTGGTCTCTGCTCAGGGCTTCAGGGACCCTTTCCAGCCATTGCCCCGCACCTACCCACCAGATCGCCGCCCTGGTGGGCGCTCCTGGCCCTGTCC-TCCGCGCTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74658849 254 + 122973662 TGATGAGAATTCACTTCACCCCTCA-CACCCCAAACAGTTGCAAGATTTAGTGGGATTCACCCTTGTCGTCACCAACCCTGCTACTCCAGCCACGTGAGTTTTCTGCCTGTCAGCCAAGCAAAATAGCCTTCCTGCAGTCGC---------ACGGCCC-TTGGGTCTCTGCTCAGGGCTTCAGAGACCCTTTCCAGCCGTTGCCCTGCCCCTACCCACCAGATCGCCGCCCTGGTGGGCGTTCCTGGCCTGGCCC-TCCGCGCTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30142146 251 + 172585720 --ATGAGAATCCCCCTCACCCCTCA-CACCCCAAACAGCTTCAAGGCTTAGTGGGATTCGCCCTTGTCGTCACCAACCCTGCTACTCCAGCCACGTGAATTTTCCACCTGTCAGTCAAGCAAAATGGCCTTCCTGCAGTCGT---------GCGGCCC-TTGGGTCTCTGCTCAGGGCTTCAAGGACCCTTTCCAGCCATTGCCCTGCCCCTACCCACCAGATCGCGGCCCTGGTGGGCGCTCCTGTT-CGGTCC-TCGGCGCTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29805615 252 - 170955103 --ATGAGAATCCCCCTCACCCCTCA-CACCCCAAACAGCTTCAAGGCTTAGTGGGATTCGCCCTTGTCGTCACCAACCCTGCTACTCCAGCCACGTGAATTTTCCACCTGTCAGTCAAGCAAAATGGCCTTCCTGCAGTCGT---------GCGGCCC-TTGGGTCTCTGCTCAGGGCTTCAAGGACCCTTTCCAGCCATTGCCCTGCCCCTACCCACCAGATCGCGGCCCTGGTGGGCGCTCCTGTTCCGGTCC-TCGGCGCTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2853058 252 -   2996164 --ATGAGAATCCCCCTCACCCCTCA-CACCCCAAACAGCTTCAAGGCTTAGTGGGATTCGCCCTTGTCGTCACCAACCCTGCTACTCCAGCCACGTGAGTTTTCCACCTGTCAGTCAAGCAAAATGGCCTTCCTGCAGTCGT---------GCGGCCC-TTGGGTCTCTGCTCAGGGCTTCAAGGACCCTTTCCAGCCATTGCCCTGCCCCTACCCACCAGATCGCGGCCCTGGTGGGCGCTCCTGTTCCGGTCC-TCGGCGCTTA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     599948 252 +    766320 --ATGAGAATCCCCCTCACCCCTCA-CACCCCAAACAGCTTCAAGGCTTAGTGGGATTCGCCCTTGTCGTCACCAACCCTGCTACTCCAGCCACGTGAGTTTTCCACCTGTCAGTCAAGCAAAATGGCCTTCCTGCAGTCGT---------GCGGCCC-TTGGGTCTCTGCTCAGGGCTTCAGGGACCCTTTCCAGCCATTGCCCTGCCCCTACCCACCAGATCGCGGCCCTGGTGGGCGCTCCTGTTCCGGTCC-TCGGCGCTTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29057086 251 -  71996105 --ATGAGAATCCCCCTCACCCCTCA-CA-CCCAAACAGCTTCAAGGCTTAGTGGGATTCGCCCTTGTAGTCACCAACCCTGCTACTCCAGCCACGTGAGTTTTCCACCTGTCAGTCAAGTAAAATGGCCTTTCTGCAGTCGT---------GCGGCCC-TTGGGTCTCTGCTCAGGGCTTCAGGGACCCTTTCAAGCCATTGCCCTGCCCCTACCCACCAGATCGCGGCCCTGGTGGGCGCTCCTGTTCCGGTCC-TCGGCGCTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     259966 252 +    290775 --ATGAGAATCCCCCTCACCCCTCA-CACCCCAAACAGCTTCAAGGCTTAGTGGGATTCACCCTTGTCGTCACCAACCCTGCTACTCCAGCCACGTGAGTTTTCCACCTGTCAGTCAAGCAAAATGGCCTTCCTGCAGTCGT---------GCGGCCC-TTAGGTCTCTGCTCAGGGCTTCAGGGACCCTTTCCAGCCATTGCCCTGCCCCTACCCACCAGATCGCGGCCCTGGTGGGCGCTCCTGTTCCAGTCC-TCGGCGCTTA
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2695022 252 -   3067355 --ATGAGAATCCCCCTCACCCCTCA-CACCCCAAACAGCTTCAAGGCTTAGTGGGATTCGCCCTTGTAGTCACCAACCCTGCTACTCCAGCCACGTGAGTTTTCCGCCTGTCAGTCAAGCAAAATGGCCTTCCTGCAGTCGT---------GCGGCCC-TTGGGTCTCTGCTCAGGGCTTCAGGGACCCTTTCTAGCCATTGCCCTGCCCCTACCCACCAGATCGTGGCCCTGGTAGGCGCTCCTGTTCCGGTCC-TCGGCGCTTA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      70789 238 +    132061 -----------------ACTCCCCACCACCCGCAACACTTGCAAGGCTTAGTGGGATCCGCCCTTGTCGTCACCAGCCCTGCTACTTCAGCCACGTGAGTTTTCCGCCTGTCAGCCAAGCAAAATGGCCTTCCTGCAGTAGT---------GCGGCAC-TTGGGTCTCTGCTCAGGGCTTCAGGGACCCTTTCCAGCCATTGCCCTGCCCCTACCCACCAGATCGCGGCCCCAGTGGGCGCTCCTGGCGCAGCTC-TCCGCGCTTA
i calJac3.chrUn_GL286223   C 0 I 491
s saiBol1.JH378388            28024 240 -    110772 TGATGACAATCCCCCTCACCCCTCACCACCCGCAACACTTGCAAGCCTTAGTGGGATCC-CCCTCATCGTCACCAGCCCTGCTACTCCAGCCCCGTGAGTTTTCCGCCTGTCAGCCAAGCAAAATGGCCTTCCTGCAGTCAT---------GCGGCCC-TTGGGTCTCTGCTCAGGGCTTCAGGGACCCTTTCCAACC--------------ACCCACCAGATCGTGGCCCCGGTGGGCGCTCCTGGCGCGGCCC-TCCGCGCTTA
i saiBol1.JH378388         C 0 I 2
s cebCap1.NW_016107755v1     290276 241 -   1771730 TGATGAGAATCCCCCTCACCCCCCACCACCCGCAACACTTGCAAGCCTTAGTGGGATCTGCCCTCGTCGTCACCAGCCCTGCTACTCCAGCCACGTGAGTTTTCCGCCTGTGAGCCAAGCAATATGGCCTTCCGGCAGTCGT---------GCGGCCC-TTGGGTCTCTGCTCAGGGCTTCAGGGACCCTTTCAAGCC--------------ACCCACTAGATGGCGGCCCCGGTGGGCGCTCCTGGCGCGGCCC-TCCGCGCTTA
i cebCap1.NW_016107755v1   C 0 I 2
s otoGar3.GL873550           172145 219 +  18854210 GGATCTAAATTTCCAGTACGTCCGT-----------------AAAGCCTGATGGGATCCTCTTTCGACGCCCCCAACCCTGGTATTCCAG---------TTTTCTGCCCCTCAGCCAA-CTAACTGACCCTCCCGTAATCGCCTCTCTCAAGCAGGCT-TTGGATCTCTGCTCAGGCGTCCAAAGACCCTTTC-AGCCATTGCTCTCCCCT----------------GCCTTGG--GGCGCTCCTGGCCCCGACTATCTGCGCTTA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26272176 176 +  26524999 -AGGCAGAAG-------GCCCCCCA-CACC---------TGCAGGGCTCTGAGGA------------CGCTGCCAGCACACCCCCTCCAG---TGCCTGCACTGTGGCCTTCAGCCATGCAAAG-GGCCTT-----AGGCTC---------TCGGCCCGTCAGCTGTCTGCTC---------GGGTCCCTTTTCAGCCCCTGCCCGGCC---AGTGATCAGACC----------------------CTCTCGTCC-TCA-------
i canFam3.chr35            C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     663609 483 +    730504 I
e aotNan1.NW_018509740v1     359326 739 -    457564 M

a score=1127832.000000
s hg38.chr6_GL000254v2_alt   945980 133 +   4827813 GTTTGTCATTGGGCGCCCAGATCCGGAACCCCAGCCTCGAAGCTTCCGGTGGCCGGGAACAAAGCCGGTTTTGCTCACTGTCGCCTGGCAAAGCAGGCGCTTGTTAGCACCCACTGAATGCGCTTATGTGCTC
s panTro5.chr6             29908765 133 + 175400573 GTTTGTCATTGCGCGCCCAGATCCGGAACCCCAGCCTCGAAGCTTCCGGTGGCCGGCAACAAAGCCGGTTTTGCTCACTGTTGCCTGGCAAAGCAGGCGCTTGTTAGCACCCACTGAATACGCTTATGTGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30142519 133 + 173848474 GTTTGTCATTGCGCGCCCAGATCTGGAACCCCAGCCTCGAAGCTTCCGGTGGCCGGCAACAAAGCCGGTTTTGCTCACTGTTGCCTGGCAAAGCAGGCGCTTGTTAGCACCCACTGAATACGCTTATGTGCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5942185 133 +   6154872 GTTTGTCATTGCGCGCCCAGATCCGGAACCCCAGCCTCGAAGCTTCCGGTGGCCGGGAACAAAGCCGGTTTTGCTCACTGTTGCCTGGCAAAGCAGGCGCTTGTTAGCACCCACTGAATACGCTTATGTGCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74659103 133 + 122973662 GCTTGCCATTGCGCGCCCAGCTCTGAAACCCCAACCTTGGAGCTTCCGGTGACCGGGAACAAAGCAGGTTTTGCTCGCTGTTGCCTGGCAAAGCAGGCTCTTGTTAGCACCCACTGAATATGCTTATGTGCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30142397 133 + 172585720 GTTTGCCATTGCGCGCCCAGCTCCGGAACCCCAGCCTTGAAGCTTCCGGCGGCCAGGAACAAAGCCGGTTTTGCTAGCTGTTGCCCGGCAAAGCAGGCGCTTGTTAGCACCCATTGAATAGGCTTACGTGCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29805867 133 - 170955103 GTTTGCCATTGCGCGCCCAGCTCCGGAACCCCAGCCTTGAAGCTTCCGGCGGCCAGGAACAAAGCCGGTTTTGCTAGCTGTTGCCTGGCAAAGCAGGCGCTTGTTAGCACCCATTGAATAGGCTTACGTGCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2853310 133 -   2996164 GTTTGCCATTGCGCGCCCAGCTCCGGAACCCCAGCCTTGAAGCTTCCGGCGGCCAGGAACAAAGCCGGTTTTGCTAGCTGTTGCCCGGCAAAGCAGGCGCTTGTTAGCACCCATTGAATAGGCTTACGTGCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     600200 133 +    766320 GTTTGCCATTGCGCGCCCAGCTCCGGAACCCCAGCCTTGAAGCTTCCGGCGGCCAGGAACAAAGCCGGTTTTGCTCGCTGTTGCCTGGCAAAGCAGGCGCTTGTTAGCACCCATTGAATAGGCTTACGTGCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29057337 133 -  71996105 GTTTGCCATTGCGCGCCCAGCTCCGGAACCCCAGCCTTGAAGCTTCCGGCGGCCAGGAACAAAGCCGGTTTTGCTCACGGTTGCCTGGCAGAGCAGGCGCTTGTTAGCACCCATTGAATAGGCTTACGTGCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     260218 133 +    290775 GTTTGCCATTGCGCGCCCAGCTCCGGAACCCCAGCCTTGAAGCTTCCGGCGGCCAGGAACAAAGCCGGTTTTGCTCGCTGTTGCCTGGCAAAGCAGGCGCTTGTTAGCACCCATTGAACAGGCTTACGTGCTC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2695274 133 -   3067355 GTTTGCCATTGCGCGCCCAGCTCCGGAACCCCAGCCTTGAAGCTTCCGGCGGCCAGGAACAAAGCCGGTTTTTCTCACTGTTGCCTGACAAAGCAGGCGCTTGTTAGCACCCATTGAATAGGCTTACGTGCTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      71518 133 +    132061 GTTTGTCATCGCGCGCCCAGCTCCGGAACCCCAGCCTTGAAGCTTCCCGCGGCCAGGAACAAAGCCTGTTTTGCTCACAGTGGCCTGACAAAGCAGGCAGTCTTTAGCATCCATCGAATAGGCTTACGCGCTC
i calJac3.chrUn_GL286223   I 491 C 0
s saiBol1.JH378388            28266 129 -    110772 GTTTGTCATTGCGCGCCCAGCTCCAGAACCCCAGCCTTGAAGCTTCCCTCGGCCAGGAACAAAGCCTGTTTTGCTCATAGTTGCCTGACAAAGCAGGCAGTCGTTAGCACCCATCGAATAGG----CGTGCTC
i saiBol1.JH378388         I 2 C 0
s cebCap1.NW_016107755v1     290519 133 -   1771730 GTTTGTCATTGCGCGCCCAGCTCCGGAACCCCAGCCTTGAAGCTTCCCGCGGCCAGGAACAAAGCCTGTTTTGCTCACAGTTGCCTGAGAAAGCAGTCAGTCGTTAGCACCCTTCGAATTGGCTTACGTGCTC
i cebCap1.NW_016107755v1   I 2 C 0
s otoGar3.GL873550           172364  77 +  18854210 --CAGCCACTGCGCGCCCAGCT-------CCCGCCTCTTAAGTCCCCG--------------AGACTGTTTTGCTCACTACTGCGTGG---------------------------------GTTTATGTGCTC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26272352  79 +  26524999 ----------GGGTGC------------------------AGCCTCCCACAGCAGGGGGGACA--TGGAATAGCTCGGCGGTGC--AGCGATGCAG-------TTCGCTCCCAGGGGATGAGCC---------
i canFam3.chr35            C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     663609 483 +    730504 I
e aotNan1.NW_018509740v1     359326 739 -    457564 M

a score=1967105.000000
s hg38.chr6_GL000254v2_alt   946113 185 +   4827813 AGAAACGGTCCCATTGGTTGGG-ACTACC-----TTCCCCGATGCCCAT-CCG-CCCAGAATCTTCCT-TCTGGGATGCCGACTTTTTCAACACGTGCCAGGAGCCCTTCCTCGGCCCGGAATCCCCAGAGTGCCCACAGTGGACAGGGCACCTGGATACACCCCAGACTAACCCACGTTTCCCCGGAGGACCC
s panTro5.chr6             29908898 186 + 175400573 AGAAACGGTCCCATTGGTTGGGGACTACC-----TTCCCCGATGCCCAT-CTG-CCCAGAATCTTCCT-TCTGGGATGCCGACTTTTTCAACACGTGCCAGGAGCCCTTCCTCGGCCCGGAATCCCCAGAGTGCCCACAGTGGACAGGGCACCTGGATACACCCCAGACTAACCCACGTTTCCCCGGAGGACCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30142652 186 + 173848474 AGAAACGGTCCCATTGCTTGGGGACTACC-----TTCCCCGATGCCCAT-CTG-CCCAGAATCTTCCT-TCTGGGATGCCGACTTTTTCAACACGCGCCAGGAGCCCTTCCTCGGTCCGGAATCCCCAGAGTGCCCACAGTGGACAGGGCACCTGGATACACCCCAGACTAACCCACGTTTCCCCGGAGGACCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5942318 185 +   6154872 AGAAACGGTCCCATTGGTTGGG-ACTACC-----TTCCCCGATGCCTAT-CTG-CCCAGAATCTTCCT-TCTGGGATGCCGACTTTTTCAACACGTGCCAGGAGCCCTTCCTCGGCCCGGAATCCCCAGAGTGCCCACAGTGGACAGGGCACCTGGATACACCCCAGACTAACCCACGTTTCCCCGGAGGACCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74659236 185 + 122973662 AGAAACGGTCCCATTGGTTGGG-ACTACC-----TTCCCCGATGCCCAT-CTG-CCCAGAATCTTCCT-TCTGGGATGCCGACTTTTTCAACACGTGCCAGGAGCCCTTCCTCGGCCCCGAATCCCCAGCGTGCCCACAGTGGACAGGGCACCTGGCTACACCCCAGACCAATCCACGTTTCCCCGGAGGACCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30142530 185 + 172585720 AGAAACGGGCCCGTTGGTTGGG-ATTGCC-----TTCCCCGATGCGCAT-CTG-CCCAGAATCTTCCT-TCTGGGATGCCGACTTTTTCAACACGTGCCAGAAGCCCTTCCTGGGCCCGGAATCCCCAGCGTGCCCACAGTGGAGAGGGCACCTGGCTACACCGCAGACTAACCCACGTTTCCCCGGAGGACCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29806000 185 - 170955103 AGAAACGGGCCCGTTGGTTGGG-ATTGCC-----TTCCCCGATGCGCAT-CTG-CCCAGAATCTTCCT-TCTGGGATGCCGACTTTTTCAACACGTGCCAGGAGCCCTTCCTGGGCCCGGAATCCCCAGCGTGCCCACAGTGGAGAGGGCACCTGGCTACACCGCAGACTAACCCACGTTTCCCCGGAGGACCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2853443 185 -   2996164 AGAAACGGGCCCGTTGGTTGGG-ATTGCC-----TTCCCCGATGCGCAT-CTG-CCCAGAATCTTCCT-TCTGGGATGCCGACTTTTTCAACACGTGCCAGGAGCCCTTCCTGGGCCCGGAATCCCCAGCGTGCCCACAGTGGAGAGGGCACCTGGCTACACCGCAGACTAACCCACGTTTCCCCGGAGGACCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     600333 185 +    766320 AGAAACGGGCCCATTGGTTGGG-ATTGCC-----TTCCCCGATGCCCAT-CTG-CCCAGAATCTTCCT-TCTGGGATGCCGACTTTTTCAACACGTGCCAGGAGCCCTTCCTCGGCCCGGAATCCCCAGCGTGCCCACAGTGGAGAGGGCACCTGGCTACACCGCAGACTAACCCACGTTTCCCCGGAGGACCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29057470 185 -  71996105 AGAAACGGGCCCATTGGTTGGG-ATTGCC-----TTCCCCGATGCCCAT-CTG-CCCAGAATCTTCCT-TCTGGGATGCCGACTTTTTCAACACGTGCCAGGAGCCCTTCCTCGGCCCGGAATCCCCAGCGTGCCCACAGTGGAGAGGGCACCTGGCTACACCCCAGACTCACCCACGTTTCCCCGGAGGACCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     260351 185 +    290775 AGAAACGGGCCCATTGGTTGGG-ATTGCC-----TTCCCCGATGCCCAT-CTG-CCCAGAATCTTCCT-TCTGGGATGCCGACTTTTTCAACACGTGCCGGGAGCCCTTCCTCGGCCCGGAATCCCCAGCGTGCCCACAGTGGAGAGGGCACCTGGCTACACCGCAGACTAACCCACGTTTCCCCGGAGGACCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2695407 185 -   3067355 AGAAACGGGCCCATTGGTTGGG-ACTGCC-----TTCCCTGATGCCCAT-CTC-CCCAGAATCTTCCT-TCTGGGATGCCGACTTTTTCAACACGTGCCAGGAGCCCTTCCTCGGCCCGGAATCCCCGGCGTGCCCACAGTGAAGAGGGCACCTGGCTACACCCCAGACTAACCCACATTTCCCCGGAGGACCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      71651 184 +    132061 AGAAACGGTCCCATTAGTTGGG-ACCGCC-----TTCCCCGATGCCCAT-CTG-CCCC-AATCTTCCC-TCTGGGATGCCGACTTTTTAAACACGTACCAGCAGTCCTTCCTCGGCCCGGAATCCCCAGCGTGCCCACAGTGGACAGGGCACCTGGCTACACCCCAGACTAACCCTGGCTTCCCCGAAGGACCG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            28395 185 -    110772 AGAAATGGTCCCATTAGCTGGG-ACCGCC-----TTCCCGGATGCCCAT-CTG-CCCCTAATCTTCCC-TCTGGAATGCCGACTTTTTCAACACGTACCAGGAGTCCTTCCTCGGCCGGGAATCCTCAGCGTGCCCACAGTGGACAGGGCAACTGTCTACACCCCAGACTAACCCTGGTTTCCCCGAAGGACCG
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     290652 185 -   1771730 AGAAACGGTCCCATTGGCTGGG-ACCGCC-----TTCGCCGATGCCCAT-CTG-CCCCGAATCTTCCT-TCTGGGATGCCGACTTTTTCAACACGTACCAGGAGTCCTTCCTCGGCCCGGAATCCCCACCGTGCCCACAGTGGACAGGGCACCTGGCTACACCCCAGACTAACCCTGGTTTCCCCGAAGGACCG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     360082 186 -    457564 AGAAACGGTCCCATTGGTTGGG-ACCGCC-----TTCCCCGATGCCCATCCCG-CCCCGAATCTTCCC-TCTGGGATGCCGACTTTTTCAACACGTACCAGGAGTCCTTCCTCGGCTCGGAATCCCCTGCGTGCCCACAGTGGACAGGGCACCTGGCTACACCCCAGACTAACCCTGGTTTCCCCGAAGGACCG
i aotNan1.NW_018509740v1   M 739 C 0
s otoGar3.GL873550           172441 173 +  18854210 AGAAATGGTCCCATTGGCTGTC-----------------CGATGCCCGT-CTG-TCCCGAAACGTCCTCTCTGGAATTCTAAC--TCTCAACACATAAAAGAGCCACTTCCTTGGCGCAGAGTCCCCAGAGTGCCGGGAGTTGACAGAACACAGACCCACAACACAGACTAACGCACGTGTCCCAGAGGGACCC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26272431 155 +  26524999 GGAGGTGCCCCCGTCCGCCGAACAGCACCAAGGAGGCCCTGAGACCCAT-CTGCCCCAGAACTTCCCC-TCTGCGATCTCTGCT-----------------------TTCCCGGGCCCG--------AGTGTGGCCTGAGCGGA-GGTGCCCCAAGCCACATCCCGA---TACCTAAGTGTTCCTCGGGGCC--
i canFam3.chr35            C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     663609 483 +    730504 I

a score=446236.000000
s hg38.chr6_GL000254v2_alt   946298 34 +   4827813 CAGAGGTTGGAAGCCCCTCCAAGATTAGGGGCGC
s panTro5.chr6             29909084 34 + 175400573 CAGAGGTTGGAAGCCCCTCCAAGATTAGGGGCGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30142838 34 + 173848474 CAGAGGTTGGAAGCCCCTCCAAGATTAGGGGCGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5942503 34 +   6154872 CAGAGGTTGGAAGCCCCTCCAAGATTAGGGACGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74659421 34 + 122973662 CAGAGGTTGGAAGCCCCTCTAAGATTAGGGGTGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30142715 34 + 172585720 CAGAGGTTGAAAGCCCCTCCAAGATTAGGGGCGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29806185 34 - 170955103 CAGAGGTTGAAAGCCCCTCCAAGATTAGGGGCGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2853628 34 -   2996164 CAGAGGTTGAAAGCCCCTCCAAGATTAGGGGCGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     600518 34 +    766320 CAGAGGTTGAAAGCCCCTCCAAGATTAGGGGCGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29057655 34 -  71996105 CAGAGGTTGAAAGCCCCTCCAAGATTAGGGGCGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     260536 34 +    290775 CACAGGTTGAAAGCCCCTCCAAGATTAGGGGCGC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2695592 34 -   3067355 CAGAGGTTGAAAGCCCCTCCAAGATTTGGGGCGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      71835 34 +    132061 CAGAGGTTGGAAGCTCCTCCAAGATTAGGGGCGC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            28580 33 -    110772 CAGAAGTTGGAAGCCCCTCCGA-ATTAGGGGCGC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     290837 34 -   1771730 CAGAGGTTGGAAGCCCCTGCAAAATTAGGGGCGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     360268 34 -    457564 CAGAGGTTGGAAGTCCCTCCAAGATTAGGGGCGC
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     664092 34 +    730504 CAGAGGTTGGAAGTGCCTTCAAGATTAGGGGCGC
i proCoq1.NW_012152574v1   I 483 I 1510
s otoGar3.GL873550           172614 34 +  18854210 TAGGAGTTGGAAGCACCTCCAAGATTAGGGGCTC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26272586 33 +  26524999 TGGGGGTTGGGAGCGTCCCCATGATGACGAGTG-
i canFam3.chr35            C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I

a score=1296125.000000
s hg38.chr6_GL000254v2_alt   946332 132 +   4827813 AGTGCTCCCCTGGCCTGCGGAAGAGTCAGAGGAGTGGGGACAACATC-CAACATCAGCCTCTACTACCGCTAGCGCGACTCCCCGCCGCCGCTCTACTCACCTGACGCGCGCAGTGGACCGCGATTT----------AGGGGC
s panTro5.chr6             29909118 132 + 175400573 TGTGCTCCCCTGGCCTGCGGAAGAGTCAGAGGAGTGGGGACAACATC-CAACATCAGCCTCTACTACCGCTAGCGCGACTCCCCGCCGCCGCTCTACTCACCTGACGCGCGCAGTGGACCGCGATTT----------AGGGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30142872 132 + 173848474 TGTGCTCCCCTGGCCTGCGGAAGAGTCAGAGGAGTGGGGACAACATC-CAACATCAGCCTCTACTACCGCTAGCGCGACTCCCCGCCGCCGCTCTACTCACCTGACGCGCGCAGTGGACCGCGATTT----------AGGGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5942537 132 +   6154872 AGTGCTCCCCTGGCCTGCGGAAGAGTCAGAGGAGTGGGGACAACATC-CAACATCAGCCTCTACTACCGCTAGCGCGACTCCCCGCCGCCGCTCTACTCACCTGACGCGCGCAGTGGACCGCGATTT----------AGGGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74659455 132 + 122973662 GGGGCTCCCCTGGCCTGCCGAAGAGTCAGAAGAGTGGGGACAACATC-CAACATCAGCCTCTACCACCGCTAGCGCGACTCCCCGCCGCCGCTCTACTCACCTGACGCGCGCAGCGGACCGCGATTT----------AGGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30142749 132 + 172585720 GGTGCTCCCCTGGCCTGCCGAAGAGTCAGAGGAGTGGGGACAACATC-TACCATCAGCCTCTACCACCGCCAACGCGAATCTCAGCCGCCGCGGTAATCACCTGACCCCCGCAGTGGACCGCGATTT----------AGGGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29806219 142 - 170955103 GGTGCTCCCCTGGCCTGCCGAAGAGTCAGAGGAGTGGGGACAACATC-CACCATCAGCCTCTACCACCGCCAACGCGACTCCCAGCCGCCGCGCTACTCACCTGACCCCCGCAGTGGACCGCGATTTAGGGGCGCAGAGGGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2853662 132 -   2996164 GGTGCTCCCCTGGCCTGCCGAAGAGTCAGAGGAGTGGGGACAACATC-CACCATCAGCCTCTACCACCGCCAACGCGACTCCCAGCCGCCGCGCTACTCACCTGACCCCCGCAGTGGACCGCGATTT----------AGGGGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     600552 132 +    766320 GGTGCTCCCCTGGCCTGCCGAAGAGTCAGAGGAGTGGGGACAACATC-CACCATCAGCCTCTACCACCGCCAACGCGACTCCCAGCCGCCGCGCTACTCACCTGACCCCCGCAGTGGACCGCGATTT----------AGGGGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29057689 122 -  71996105 GGTGCTCCCCTGGCCTGCCGAAGAGTCGGAGG----------ACATC-CACCATCAGCCTCTACCACCGCCAACGCGACTCCCAGCCGCCGCGCTACTCACCTGACCCCCGCAGTGGACCGCGATTT----------AGGGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     260570 132 +    290775 GGTGCTCCCCTGGCCTGCCGAAGAGTCAGAGGAGTGGGGACAACCTC-CACCATCAGCCTCTACCACCGCCAACGCGACTCCCAGCCGCCGCGCTACTCACCTGACCCCCGCAGTGGACCGCGATTT----------AGGGGC
i manLeu1.NW_012099233v1   C 0 I 15425
s colAng1.NW_012115566v1    2695626 132 -   3067355 GGTGCTCCCCTGGCCTGCCGAAGAGTCAGGGGAGTGAGGACAACATC-CAACATCAGCCTCTACCACCGCCAGCGCGACTCACAGCCGCCGCTCTACTCACCTGACCCCCGCAGTGGACCGCGATTT----------AGGGGC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      71869 132 +    132061 GGTGCTCCCCTGGCCTGCCGAGGAGTCAGAGGAGCGGGGACAACATC-CAACATCAGCCTCTACCACCGTTAGCTGGAATCCCCGCTACCGCGCTACTCACCTGACGCGCGCCGCGAACCGCGATTT----------GGGGGC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            28613 132 -    110772 GGTGCTCCTCTGGCCTGCCGAACAGTCAGAGGAGAGGGAACAACATC-CAACATCAGCCTCTACCACCGCTAGCGGGAATCCCAGCTACCGCGCTACTCACCAGCCCCGCGCGGCGAACCGCGATTT----------GGGGGC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     290871 132 -   1771730 GGTGTTCCCCTGGCCTGCCGAAGAGTCAGAGGAGCGGGGACAACATC-CAACATCAGCCTCTACCACCACTAGCGGGAATCCCCGCTACCGCGCTACTCACCTGCCGCGCGCGGCGAACCGCGATTT----------GGGGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     360302 132 -    457564 GGTGCTTCCCTGGCCTGCCGAAGAGTCAGAGAAGCGCGGACAACATC-CAACATCGGCCTCTACCACCGCTAGCGGCAATCCCCGCTACCGCGCTACTCACCTGCCGCGCGTGGCGAACCGCGATTT----------GGGGGC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           172648 113 +  18854210 AATGATTGCCTAGCCTGCCGAAGGGGCAGAAGAGTACGGACGA-------------------ACACCCTCTAGCGCGACCTCTCAACGCCACCTTACTCACCTGACCCGCTTCAAAGACCCAGACTT----------AGCGC-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26272619 108 +  26524999 ------CCCTCTGCCTGCCTCAGGGTGGAGGAGACCCGGACAAACTCTCTGCATCTGCCTCCATCTGCACAAACTCAATCCCCAGCGGCC---CAACTCACCCA--CCGAGCAGTG---------------------AGG---
i canFam3.chr35            C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I

a score=228702.000000
s hg38.chr6_GL000254v2_alt   946464 28 +   4827813 ACAGGGTCTCCCGGGGACCAGCGGCTGG
s panTro5.chr6             29909250 28 + 175400573 ACAGGGTCTCCCGGGGACCAGCGGCTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30143004 28 + 173848474 ACAGGGTCTCCCGGGGACCAGCGGCTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5942669 28 +   6154872 ACAGGGTATCCCGGGGACCAGCGGCTGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74659587 28 + 122973662 GCAGAGTCTGCCAGGGACCAGCCGCTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30142881 28 + 172585720 GCAGGGTCTTCCGGGAACCAGCGGGTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29806361 28 - 170955103 GCAGGGTCTCCCGGGAACCAGCGGCTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2853794 28 -   2996164 GCAGGGTCTCCCGGGAACCAGCGGCTGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     600684 28 +    766320 TCAGGGTCTCCCGGAAACCACCGGCTGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29057811 28 -  71996105 TCAGGGTCTCCCGGGAATCAGCGGCTGG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2695758 28 -   3067355 GCAGGGTCTCCCGGGAACTAGCGGCTGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      72001 28 +    132061 GCAGGGTTTCCAGGGGACCAGCGGCTGG
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            28745 28 -    110772 GCAGGGTTTCCAGGGGACCAGCGGCTGG
i saiBol1.JH378388         C 0 I 6078
s cebCap1.NW_016107755v1     291003 28 -   1771730 GCAGGGTTTCCAGGGGACCAGCTGCTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     360434 28 -    457564 GCAGGGTTTCCAGGGGACCAGCAGCTGG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           172761 28 +  18854210 ACAGTGCTTTGTGGCCACGAGCAGCTAC
i otoGar3.GL873550         C 0 I 12
s canFam3.chr35            26272727 19 +  26524999 ACGGGGCCT--------CCAGCCGTGG-
i canFam3.chr35            C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I

a score=763908.000000
s hg38.chr6_GL000254v2_alt   946492 110 +   4827813 AGCGCTCCGGCCGAGC--------------------ACCCGCAGTcccggcg--------ccgcggccccaccccg--------------------------gccccgcccTCTTCCGCTCCCTCCCAGTCATCAGGCCACCGAGAATGTGCCCCTTGACCCAG
s panTro5.chr6             29909278 110 + 175400573 AGCGCTCTGGCCGAGC--------------------ACCCGCAGTcccggcg--------ccgcggccccgccccg--------------------------gccccgcccTCTTCCGCTCCCTCCCAGTCATCAGGCCACCGAGAACGTGCCCCTTGACCCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30143032 110 + 173848474 AGCGCTCTGGCCGAGC--------------------ACCCGCAGTcccggcg--------ccgcggccccgccccg--------------------------gccccgcccTCTTCCGCTCCCTCCCAGTCATCAGGCCACCGAGAACGTGCCCCTTGACCCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5942697 110 +   6154872 AGCGCTCCGGACGAGC--------------------ACCCGCAGTcccggcg--------ccgcggccccgccccg--------------------------tccccgcccTCTTCCGCTCCCTCCCAGTCATCAGGCCACCGAGAACGTGCCCCTTGACCCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74659615 110 + 122973662 AGcgctccagcccagc--------------------acccgcagtcccggcg--------ccgcggccccgccccg--------------------------gccccgcccGCTTCCACTCCCTCCTAGTCATCAGGCCACCGAGAACCTGCCCCTTGACCCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30142909 110 + 172585720 AGGGGTCCAGCCCAGC--------------------ACCCGCAGCCCCGGGG--------CCGCGGCCCCGCCCAG--------------------------GCCCCGCCCGGTTTTCCTCCCTCCCAGTCCTCAGGCCACCGAGAACCTGCCCCTTGACCCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29806389 118 - 170955103 AGCGCTCCAGCTCAGC--------------------ACTCGCAGCCACGGCGCCGCGGCCCCGCGGCCCCGCCCAG--------------------------GCCCCGCCCGGTTCTCCTCCCTCCCAGTCCTCAGGCCACCGAGAACCTGCCCCTTGACCCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2853822 118 -   2996164 AGCGCTCCAGCTCAGC--------------------ACTCGCAGCCCCGGCGCCGCGGCCCCGCGGCCCCGCCCAG--------------------------GCCCCGCCCGGTTCTCCTCCCTCCCAGTCCTCAGGCCACCGAGAACCTGCCCCTTGACCCAG
i macNem1.NW_012011356v1   C 0 I 9339
s cerAty1.NW_012002711v1     600712 110 +    766320 AGCgctccagcccagc--------------------acccgcagccccggcg--------ccgcggccccgcccag--------------------------gccccgcccGGTTCCCCTCCCTCCCAGTCCTCAGGCCACCGAGAACCTGCCCCTTGACCCAG
i cerAty1.NW_012002711v1   C 0 I 7560
s chlSab2.chr17            29057839 110 -  71996105 AGCGCTCCAGCCCAGC--------------------ACCCGCAGCCCCGGCG--------CCGCGGCCCCGCCCAG--------------------------GCCCCGCCCGGTTCCCCTCCCTCCCAGTCCTCAGGCCGCCGAGAACCTGCCCCTTGACCCAG
i chlSab2.chr17            C 0 I 8169
s colAng1.NW_012115566v1    2695786 110 -   3067355 ACCGCTCCAGCCCAGC--------------------ATCCGCAGCCCCGGCG--------CCGCGGCCCCGCCCAG--------------------------GCCCCGCCCGGTTCCCCTCCCTCCCAGTCCTCGGGCCACCGAGAACCTGCCCCTTGACTCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      72029 110 +    132061 GGCGCTCCAGCCCAGG--------------------ACCCTCAGAccccggg--------ccgcggccccgccccg--------------------------gccccgccTGCTTCCACCCCCTCCCAGTCCTCAGGCCTCCGAAAACCTGCCGGTTGAGTCAG
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     291031 110 -   1771730 AGCGCTCCAGCCCAGA--------------------ACCTGCAGACCCCGGG--------CCGCTGCCCCGCCCCG--------------------------GCCCCGCCTGCTTCCACCCCCTCCCAGTCCTTAGGCCTCCGAAAACCTGCCCATTGACCCAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     360462 110 -    457564 AGCGCTCCAGCCCAGG--------------------ACCCGCAGACCCCGGG--------CCGCGACCCCGCCCAG--------------------------GCCCCGCCTGCTTCCACCCCCTCCCAGTTCTCAGGCCTCCGAAAACCTGCCCTTTGACTCAG
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           172801 144 +  18854210 CGcgacccgtcccgacccgcccacgaccacgccccgacccgcccccgtcgcg--------cctc-gccccgcccAGCACATGACCACGCCCTGTCCCGACCTGCCCGGCTCTCTTCCGCTCCCTTCCACC------GCTTCC-----CTTGCTACATGACCCAG
i otoGar3.GL873550         I 12 I 1
s canFam3.chr35            26272746  75 +  26524999 GGCG--------------------------------TACAGCAGGCCCGGCG-------CCCGCTATCCCAGCCGG--------------------------CTTCTGC--------GCACCCTCCGCATCCCCTGTCCG----------------TGGCTCAG
i canFam3.chr35            C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I

a score=31664.000000
s hg38.chr6_GL000254v2_alt   946602 11 +   4827813 ATGAGAGGGTG--
s panTro5.chr6             29909388 11 + 175400573 CTGAGAGGGTG--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30143142 11 + 173848474 CTGAGAGGGTG--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5942807 11 +   6154872 CTGAGAGGGTG--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74659725 11 + 122973662 CTGAGAGGGTG--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30143019 11 + 172585720 GTAAAAGGGTg--
i rheMac8.chr4             C 0 I 7505
s macFas5.chr4             29806507 11 - 170955103 CTAAAAGGGTg--
i macFas5.chr4             C 0 C 0
s colAng1.NW_012115566v1    2695896 11 -   3067355 CTAAAAGGGTG--
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      72139 11 +    132061 CTCAGCGGGTG--
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     291141 11 -   1771730 CTCAGAGGGTG--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     360572 11 -    457564 CTCAGAGGGTG--
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           172946 10 +  18854210 CTAGGCTATT---
i otoGar3.GL873550         I 1 C 0
s canFam3.chr35            26272821 11 +  26524999 --AGAAGACTGCC
i canFam3.chr35            C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I

a score=3020.000000
s hg38.chr6_GL000254v2_alt   946613 2 +   4827813 AG-
s panTro5.chr6             29909399 2 + 175400573 AG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30143153 2 + 173848474 AG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5942818 2 +   6154872 AG-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74659736 2 + 122973662 AG-
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29806518 2 - 170955103 gg-
i macFas5.chr4             C 0 I 7467
s colAng1.NW_012115566v1    2695907 2 -   3067355 GG-
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      72150 2 +    132061 GG-
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     291152 2 -   1771730 GG-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     360583 2 -    457564 GG-
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           172956 2 +  18854210 GG-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26272832 2 +  26524999 -GA
i canFam3.chr35            C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=164067.000000
s hg38.chr6_GL000254v2_alt   946615 57 +   4827813 CCCGCCAAGGTCAAGC--TTCCCATCCTAAG------AATCACAGACAG-----CCCGGCCATGCACCAC
s panTro5.chr6             29909401 57 + 175400573 CCCGCCAAGGTCAAGC--TTCCCATCCTAAG------AATCATAGACAG-----CCCGGCCATGCACCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30143155 57 + 173848474 CCCGCCAAGGTCAAGC--TTCCCATCCTAAG------AATCCTAGACAG-----CCCGGCCATGCACCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5942820 57 +   6154872 CCCGCCAAGGTCAAGC--TTCCCATCCTAAG------AATCATAGACAG-----CCTGGCCATGCACCAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74659738 54 + 122973662 TCAGCTAAGGTCGAGC--TTCCTATCCTAAGAA--TCAATCATAGACAG-----CCCGG-------CCAC
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2695909 57 -   3067355 CCCGCCAAGGTCAAGC--TTCCCATCCTAAG------AATCATAGACAG-----CCCAGCCATGCACCAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      72152 57 +    132061 CCCGCCAAGGTCAAGA-GTTCACATCCTAAG------AACCAGAGACAG-----CCC-GCCATGCACCAA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     291154 57 -   1771730 CCCGCCAAGGTCAAGA-GTTCCCATCCTAAG------AACCATAGACAG-----CCC-GCCATGCACCAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     360585 57 -    457564 CCCGCCAAGGTCAAGA-GTTCCCATCCTAAG------AACCATAGACAG-----CCC-GCCATGCACCAC
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           172958 64 +  18854210 CTCGCCAAGGTCAAGA-GATTCTATACTAACCAGTCCAAAACTTGAGAG-----CCCTGCCACGTCCCAC
i otoGar3.GL873550         C 0 I 3323
s canFam3.chr35            26272834 64 +  26524999 CCCGCCAAGGTCAAGAGGTCACCATCAAGGA------AGCCAAAAAGGGAGAAACCCCGCCCCTCACCAC
i canFam3.chr35            C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=219990.000000
s hg38.chr6_GL000254v2_alt   946672 79 +   4827813 CACTTCGAGCCTCCGACCAACTGATAGCTGCTGGTCCCAAGTAGCGCTAGGATTTTCGCTTTCCCAGTCTTAATTGACT
s panTro5.chr6             29909458 79 + 175400573 CACTTCGAGCCTCCGACCAACTGATAACTGCTGGTCCCAAGTAGCGCTAGGATTTTCGCTTTCCCAGTCTTAATTGACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30143212 79 + 173848474 CACTTCGAGCCTCCGACCAACTGATAACTGCTGGTCCCAAGTAGCGCTAGGATTTTCGCTTTCCCAGTCTTAATTGACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5942877 79 +   6154872 CACTTCGAGCCTCCGACCAACTGATAACTGCTGGTCCCAACTAGCGCTAGGATTTTCGCTTTCCCAGTCTTAATTGACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74659792 76 + 122973662 CACTTCGAGCCTCCGACCAAC---TAACTGCTGGTCCCAACTAGCGCTAGGATTTTCGTTTTCCCAGTCTTAATAGACT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2695966 79 -   3067355 CACCTGGAGCCTCCCACCAACTGATAACTGCTGGTCCCAAAGAGCGCTAGGATTTTCCTTTTCCCAGTCTTAATTGACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      72209 76 +    132061 CACTTCCAGCCTCATACCAACTGGTAAATGCTGGTCCCACCTAGCGCTAGGATTTT---TTCCCCAGTCTTAATTGACT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     291211 75 -   1771730 CACTTCGAGCCTCATACCAACTGGT-AATGCTGGTCCCACCTAGCACTAGGATTTT---TTTCCCAGTCTTAACTGACT
i cebCap1.NW_016107755v1   C 0 I 3545
s aotNan1.NW_018509740v1     360642 76 -    457564 CACTTGGAGCCTCATACCAACTGGTAAATGCTGGTTCCACCTAGCGCTAGGACTTT---TTTCCCAGTCTTAATTGACT
i aotNan1.NW_018509740v1   C 0 I 8892
s canFam3.chr35            26272898 70 +  26524999 -----CTACCCTCCCACCGGC----AGCACCAGGTCCCACCTAGTGCCAGGATCTGGCCTTACTCCCTCTCAATTTACT
i canFam3.chr35            C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           173022 3323 +  18854210 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=14302.000000
s hg38.chr6_GL000254v2_alt   946751 14 +   4827813 -CTAAAAGAAGAAG-A
s panTro5.chr6             29909537 14 + 175400573 -CTAAAAGAAGAAG-A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30143291 14 + 173848474 -CTAAAAGAAGAAG-A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5942956 15 +   6154872 -CTAAAAGAAGAAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74659868 13 + 122973662 -CTAGAAGAAGAAG--
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2696045 10 -   3067355 -GTAGAAGAA-----A
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      72285 14 +    132061 -ATAGAAAAAAAAA-A
i calJac3.chrUn_GL286223   C 0 C 0
s canFam3.chr35            26272968 15 +  26524999 CTTGAAACAAGAAG-A
i canFam3.chr35            C 0 N 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           173022 3323 +  18854210 I
e aotNan1.NW_018509740v1     360718 8892 -    457564 I
e cebCap1.NW_016107755v1     291286 3545 -   1771730 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=245651.000000
s hg38.chr6_GL000254v2_alt   946765 157 +   4827813 AAA-----------------AAAA-----GCctgggcgcgattgctcacacctgtaattccggcactttgggaggtcgaggctggtgaattacctgaagtcaggagttcaagaccaccctggccaacatggcgaaacctcgtctctactaaaagt-acaaaaattagccaggcgtggtgg
s panTro5.chr6             29909551 157 + 175400573 AAA-----------------AAAA-----GCctgggcgcggttgctcacacctgtaattccggcactttgggaggtcgaggctggtgaaatacctgaagtcaggagttcaagaccaccctggccaacatggcgaaacctcgtctctactaaaagt-acaaaaattagccaggcgtggcgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30143305 157 + 173848474 AAA-----------------AAAA-----GCctgggcgcggttgctcacacctgtaattccggcactttgggaggtcgaggctggtgaaatacctgaagtcaggagttcaagaccaccctggccaacatggcgaaacctcgtctctactaaaagt-acaaaaattagccaggcgtggcgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5942971 157 +   6154872 AAA-----------------AAAA-----GCctgggcgcggttgctcacacctgtaattccggcactttgggaggtctaggcgggtgaattacctgaagtcaggagttcaagaccaccctggccaacatggcgaaacctcgtctctactaaaagt-acaaaaattagccaggcgtggtgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74659881 155 + 122973662 --A-----------------AAAA-----ggccgggcacggttgctcacgcctgtaattccggcactttgggaggtcgaggcaggtgaattacctgaagtcaggagttcaagaccagtctggccaacatggcgaaaccccgtctttactaaaagt-acaaaaattagccaggcgtggtgg
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2696055 156 -   3067355 AAA-----------------AAAA-----ggccgggcccagttgttcacgcctgtagttccggcactgtgggaggctgaggtgggtgaattacctgaggtcaggagttcaagaccagcctggccaacatggcgaaaccccgtctctac-aaaagt-ataaaaattagcccggcgtggtga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      72299 180 +    132061 AGACTGAAGTATTTACGGTTAAAACACGCggccgagagcggtggctcacgcctgtaatcctaacactttgggaggtcgagtggggtggatcacctgaggtctgaagttcgaaatcagcgtggccaatatggcgaaaccccatctctattaaaaataacaaaaattagccagtagtggtgg
i calJac3.chrUn_GL286223   C 0 I 3002
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           173022 3323 +  18854210 I
e aotNan1.NW_018509740v1     360718 8892 -    457564 I
e cebCap1.NW_016107755v1     291286 3545 -   1771730 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=177528.000000
s hg38.chr6_GL000254v2_alt   946922 137 +   4827813 cgggcgcctgtaaccccagctactcaggaggctgaggcaggagaatcgcttgaatccgggaggtggaggttgcagtgagcccagatcacgccactgcactccagcctgggcaaaaagagtgaaactccatct-caaaa
s panTro5.chr6             29909708 137 + 175400573 cgggcgcctgtaaccccagctactcaggaggctgaggcaggagaatcgcttgaatccgggaggtggaggttgcagtgagcccagatcacgccactgcactccagcctgggcaaaaagagtgaaactccatct-caaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30143462 138 + 173848474 cgggcgcctgtaaccccagctactcaggaggctgaggcaggagaatcgcttgaatccgggaggtggaggttgcagtgagcccagatcacgccactgcactccagcctgggcaaaaagagtgaaactccatctacaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5943128 137 +   6154872 cgggcgcctgtaaccccagctactcaggaggctgaggaaggagaatcgcttgaatccgggaggtggaggttgcagtgagcccagatcacgccactgcactccagcctgggcaacaagagtgaaacttcatcc-gaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74660036 137 + 122973662 cgggcgcctgtaaccccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggcggaggttgcagtgagccgagatcacgccactgcactccagcctgggcaacaagagtgaaacttcatct-caaaa
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2696211 137 -   3067355 ctggcccctgtaaccccagctactcaggaggctgaggtaggagaatcgcttgaacccaggaggcagaggttgcagtgagccgagatcacgccattgtactccagcctgggcaacaagagcaaaattccatct-caaaa
i colAng1.NW_012115566v1   C 0 M 910
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           173022 3323 +  18854210 I
e aotNan1.NW_018509740v1     360718 8892 -    457564 I
e cebCap1.NW_016107755v1     291286 3545 -   1771730 I
e calJac3.chrUn_GL286223      72479 3002 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=9836.000000
s hg38.chr6_GL000254v2_alt   947059 14 +   4827813 aaaaaaaaaaaaaa
s panTro5.chr6             29909845 14 + 175400573 aaaaaaaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30143600 14 + 173848474 aaaaaaaaaaaaaa
i panPan2.chr6             C 0 M 301
s gorGor5.CYUI01015250v1    5943265 14 +   6154872 aaaaaaaaaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74660173 13 + 122973662 aaaaaaacaaaaa-
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           173022 3323 +  18854210 I
e aotNan1.NW_018509740v1     360718 8892 -    457564 I
e cebCap1.NW_016107755v1     291286 3545 -   1771730 I
e calJac3.chrUn_GL286223      72479 3002 +    132061 I
e colAng1.NW_012115566v1    2696348 910 -   3067355 M
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=75470.000000
s hg38.chr6_GL000254v2_alt   947073 156 +   4827813 aaaaaaGAGGAAAGTATTTACGAAAAAAAAAAAAAAA-GACCAAAGTATTATGATTAAAACACGCggctgagagcggtggctcacacctgtaatcccagcactttgggaggctgagggggcggatcacctgaggtcagaagttcgacctcagcgtgg----------------------------
s panTro5.chr6             29909859 154 + 175400573 aaa---gaggaaaGTATTTACGAAAAAAAAAAAAAAAAGACCAAAGTATTATGATCAAAACACGCggccgagagcggtggctcacacctgtaatcccagcactttgggaggctgagggggcggatcacctgaggtcagaagttcgacctcagcgtgg----------------------------
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5943279 155 +   6154872 aaaaaaaaaGGAAGTATTTACGAAAAAAAAAAAAAA--GAGCAAAGTATTATGATTAAAACACGCggccgagagcggtggctcacacctgtaatcccagcactttgggaggcggagggggcggatcacctgaggtcagaagttcgacctcagcgtgg----------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74660186 183 + 122973662 aaaaaagaggaaaGTATTTACGGAAAAAAAAAAAAA--GACCAAAGTATTATGATTAAAACACGCAgccgagagcggtggctcacacctgtaatcccagcactttgggaggccgagggggtggatcacctgaggtcggaagttcgacctcagcgtggccaatatggcgaaacgttatcagcgtgg
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           173022 3323 +  18854210 I
e aotNan1.NW_018509740v1     360718 8892 -    457564 I
e cebCap1.NW_016107755v1     291286 3545 -   1771730 I
e calJac3.chrUn_GL286223      72479 3002 +    132061 I
e colAng1.NW_012115566v1    2696348 910 -   3067355 M
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I
e panPan2.chr6             30143614 301 + 173848474 M

a score=102143.000000
s hg38.chr6_GL000254v2_alt   947229 116 +   4827813 ccaatatggcgaaaccttgtccctattaaaaatacaaaagttagccggtggtggtgacgcacacctgtaatcccagctacttgggagacATtgccgttactgggcaagtgttcttt
s panTro5.chr6             29910013 116 + 175400573 ccaatatggcgaaaccttgtccctattaaaaatacaaaagttagccggtggtggtgacgcacacctgtaatcccagctacttgggagacATtgccattactgggcaagtgttcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30143926 116 + 173848474 ccaatatggcgaaaccttgtccctattaaaaatacaaaagttagccggtggtggtgacgcacacctgtaatcccagctacttgggagacATtgccattactgggcaagtgttcttt
i panPan2.chr6             M 301 C 0
s gorGor5.CYUI01015250v1    5943434 116 +   6154872 ccaatatggcgaaaccttgtccctgttaaaaatacaaaagttagcaggtggtggtgatgcacacctgtaatcccagctacttgggagacATtgccgttactgggcaagtgttcttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74660369 112 + 122973662 ccaatatggcgaaaccttgtctctattaaaaatacaaaagttagccggtggcggtgacg----cctgtaatcccagctacttgggaggcATtgccactactgggcaagtgttcttt
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           173022 3323 +  18854210 I
e aotNan1.NW_018509740v1     360718 8892 -    457564 I
e cebCap1.NW_016107755v1     291286 3545 -   1771730 I
e calJac3.chrUn_GL286223      72479 3002 +    132061 I
e colAng1.NW_012115566v1    2696348 910 -   3067355 M
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=67053.000000
s hg38.chr6_GL000254v2_alt   947345 59 +   4827813 caagagcatcttatctgaattactatagtactaaagaaTGTCTAggctgggcccccgtg
s panTro5.chr6             29910129 58 + 175400573 caagagcgtcttatctgaattactatagtactaaagaaTGTCTAggctgggcccc-atg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30144042 58 + 173848474 caagagcatcttatctgaattactatagtactaaagaaTGTCTAggctgggcccc-atg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5943550 58 +   6154872 caagagcatcttctctgaattactatagtactaaagaaTGTCTAggctgggcccc-atg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74660481 58 + 122973662 ccagagcatcttatctgaattactgtagtactaaacaaTGTCTAGGCTGGGCCGC-ATT
i nomLeu3.chr1a            C 0 C 0
s cebCap1.NW_016107755v1     294831 58 -   1771730 caagagcatcttatctgaattactgtactactaaagaaTGCCTAAgccaggcctg-gtg
i cebCap1.NW_016107755v1   I 3545 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           173022 3323 +  18854210 I
e aotNan1.NW_018509740v1     360718 8892 -    457564 I
e calJac3.chrUn_GL286223      72479 3002 +    132061 I
e colAng1.NW_012115566v1    2696348 910 -   3067355 M
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=611065.000000
s hg38.chr6_GL000254v2_alt   947404 350 +   4827813 gctcactcctggaatgctaacactttgggaagctgaggagggaggattgctggaggccaggagttcaagaccaacctgggcaacatagcaagaccctttctctaga-aaaaatgaaaacaacttggccaggtgtggtggtacatgcctttagtcctaggtgcttaggaggttgaggtgggaggattgcttgagctcaggagtttgaggttacagtgagctatgattgcaccactgcattccagccttggcaatggagtgaggccctatttctaaacagaacaaaaaaaaa------gaaTGCCTGCTGATAAACCTTGTGACAGGACGTTCATGAAGGATGAAGAAAAGAtttcttt
s panTro5.chr6             29910187 356 + 175400573 gctcacacctggaatgctaacactttgggaagctgaggagggaggattgctggaggccaggagttcaagaccaacctgggcaacatagcaagaccctttctctaga-aaaaatgaaaacaacttggccaggtgtggtggtacatgcctttagtcctaggtgcttaggaggttgcggtgggaggattgcttgagcccaggagtttgaggttacagtgagctatgattgcaccactgcattccagccttggcaatggagtgaggccctatttctaaacagaacaaaaaaaaaaaaaaagaaCGCCTGCTGATAAACCTTGTGACAGGACATTCATGAAGGATGAAGAAAAGAtttcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30144100 353 + 173848474 gctcacacctggaatgctaacactttgggaagctgaggagggaggattgctggaggccaggagttcaagaccaacctgggcaacatagcaagaccctttctctaga-aaaaatgaaaacaacttggccaggtgtggtggtacatgcctttagtcctaggtgcttaggaggttgcggtgggaggattgcttgagcccaggagtttgaggttacagtgagctatgattgcaccactgcattccagccttggcaatggagtgaggccctatttctaaacagaacaacaaaaaa---aaagaaCGCCTGCTGATAAACCTTGTGACAGGACATTCATGAAGGATGAAGAAAAGAtttcttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5943608 347 +   6154872 gctcactcctggaatgctaacactttgggaagctgaggagggaggattgctggaggccaggagttcaagaccaacctgggcaacatagcaagaccctttctctaga-aaaaatgaaaacaacttggccaggtgtggtggtacatgcctttagtcctagctgcttaggaggttgaggtgggaggattgcttgagcccaggagtttgaggttacagtgagctatgattgcaccactgcattccagccttggcaatggagtgaggccctatttctaaacagaacaaaaaaaaa------gaaTGCCTGCTGATAAACCTTGTGACAGGACATTCATGAAGGATGAAGAAAAGAttta---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74660539 353 + 122973662 gctcacgcctagaatgctaacactttgggaagctgaggagggaggattgctggaggccaggagttcaagaccagcctgggcaacatagcaagaccctttctctaga-aaaaatgaaaacaatttggccaggtgtggtggtacatgcctttagtcctagctgcttaggaggttgaggtgggaggattgcttgagcccaggagtttgaggttacaatgagctatgattgcaccactgcattctagcctaggcaatggagtgaggccctatctctaaacaaaacaaaacaaaa---aaagaaTGTCTGCTGATAAACCTTGTGACAGGACATTCATGAAGGATGAAGAAAAGAtttcttt
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2697280 347 -   3067355 gctcacgcctgtaatgctaacactttgggaagctgaggagggaggattgctggaggccaggagtccaagaccagcctgggcaacatag------cctttctctaga-aaaaatgaaaacaacttggccaggtgtggtggtacatgcctttagtcctagctactgaggaggttgaggtgggaggattgcttgagcccagcagtttgaggttacagtgagctaagattgaaccactgcattccagcctaggcaatggagtaaggccctgtctctaaacaaaacaaaacaaaa---caaaaaTGTCTGCTGATAAACCTTGTGACAGGACATTCATGAAGGATGAAGAAAAtatttcttt
i colAng1.NW_012115566v1   M 910 C 0
s cebCap1.NW_016107755v1     294889 353 -   1771730 gctcacacccatattgctaacactttgggaagctgaggcgggaggattgttggaggttaggagttgaagaccagcctgggcaacatagcaagaccttttctctagagaaaaaggaaaacaatttggccaggtgtggtggtacatgcctttagtcttagccacttaggaggctgaagtgggaggattgcttgagcccaggagttggagattatagtgagctgcgattgcacgactgcattccagcctaggcaatggaaggaggtcctatctctaaa-aaaacaaaacaaaa---aaagaaTGTCTGCTGTTAAACCTTGTGACAGGACATTTATGAAGGTTGaagaaaatattttttt
i cebCap1.NW_016107755v1   C 0 I 1487
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           173022 3323 +  18854210 I
e aotNan1.NW_018509740v1     360718 8892 -    457564 I
e calJac3.chrUn_GL286223      72479 3002 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=110420.000000
s hg38.chr6_GL000254v2_alt   947754  97 +   4827813 tatttttttatttttatttttttg-agacagagtctcgctctgttgccccggctggagtgcagtggcgccatctcagctcactgcaacctccaa--------------------------------ctcc
s panTro5.chr6             29910543  97 + 175400573 tatttttttatttttatttttttg-agacagagtctcgctctgttgccccggctggagtgcagtggcgccatctcagctcactgcaacctccaa--------------------------------ctcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30144453  98 + 173848474 tatttttttatttttatttttttgtagacagagtctcgctctgttgccccggctggagtgcagtggcgccatctcagctcactgcaacctccaa--------------------------------ctcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5943955  94 +   6154872 ---ttttttattttcatttttttg-agacagagtcttgctctgttgccccggctggagtgcagtggcgccatctcagttcactgcaacctccaa--------------------------------ctcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74660892 120 + 122973662 tatttttttatttttatttttttg-agat---------ctctgttgccccggctggagtgcagtggcgccatctcagctcactgcaacctccaactcccgggttcaagggattctcctgccttggcctcc
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2697627  97 -   3067355 tatttttttatttttttatttttg-agatggagtcttgctctgctgccctggctggagtgcagtggcaccatctctgctcactgcaacctccac--------------------------------ctcc
i colAng1.NW_012115566v1   C 0 I 1007
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           173022 3323 +  18854210 I
e aotNan1.NW_018509740v1     360718 8892 -    457564 I
e cebCap1.NW_016107755v1     295242 1487 -   1771730 I
e calJac3.chrUn_GL286223      72479 3002 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=155803.000000
s hg38.chr6_GL000254v2_alt   947851 186 +   4827813 tgagtagctgggattacaggtgcgtgccaccatacccggttaatttttttttttttttttttttttttagtacacacagggtttcaccatgttggtcaggctggtctcaaactcctgacctcatgatctgcctgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcT
s panTro5.chr6             29910640 180 + 175400573 tgagtagctgggattacaggtgtgtgccaccatacctggtta------tttttttattttatttttttagtagacacagggtttcaccatgttggtcaggctggtctcaaactcctgacctcaggatctgcctgcctcagcctcccaaagtgctgggattacaggcgtgagccacctcgcccggcT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30144551 180 + 173848474 tgagtagctgggattacaggtgtgtgccaccatacctggtta------tttttttattttatttttttagtagacacagggtttcaccatgttggtcaggctggtctcaaactcctgacctcatgatctgcctgcctcagcctcccaaagtgctgggattacaggcgtgagccacctcgcccggcT
i panPan2.chr6             C 0 I 74
s gorGor5.CYUI01015250v1    5944049 181 +   6154872 tgagtagctgggattacaggtgcgtgccaccatacccggttaat----ttttttttttttttttttttagtagacacagggtttcaccatgttggtcaggctggtctcaaactcctgacctcatgatctgcctgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgcg-ccGGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74661012 186 + 122973662 cgagtagctgggattacaggcgcatgccaccataccgggctaatttttttttttttttttttttttttagtagacacagggtttcaccatgttggtcaggctggtctcaaactcctgacctcatgatctgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcccggcT
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           173022 3323 +  18854210 I
e aotNan1.NW_018509740v1     360718 8892 -    457564 I
e cebCap1.NW_016107755v1     295242 1487 -   1771730 I
e calJac3.chrUn_GL286223      72479 3002 +    132061 I
e colAng1.NW_012115566v1    2697724 1007 -   3067355 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=113688.000000
s hg38.chr6_GL000254v2_alt   948037 241 +   4827813 AGAAAAGATTTCTTTCTTTTTTCTtttttttttttt-aattatactgtaagttttagggtacatatgcacaacatgccggttagttacatatgtatacatgtgccatgttggtgtgctgcacccat-aactcatcatttaacattagatatatctcctaatgctatccctccccactcccTAGAAAAGAtttcttgtggagtttttaaaaagtcctttgaaacaattcttttcttt---tcctttt
s panTro5.chr6             29910820 246 + 175400573 AGAAAAGATTTCTTTCTTTTTTCTTttttttttttttaattatactgtaagttttagggtacatgtgcacaacatgccagttagttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcatcatttaacattagatatatctcctaatgctatccctccccactcccTAGAAAAGAtttcttgtagagtttttaaaaagtcctttgaaacaattcttttctttctttctttct
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5944230 238 +   6154872 AGAAAAGATTTCTTTCTTTTTTCTtttttttttttt-aattatactgtaagttttagggtacatgtgcacaacatgccg----gttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcatcatttaacattagatatatctcctaatgctatccctccccactcccTAGAAAAGAtttcttgtggagtttttaaaaagtcctttgaaacaattcttttcttt---tcttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74661198 235 + 122973662 AGAAAAGATTTCTTCTTATTATCAttttttt------tattatactttaagttttaggatacatgtgcacaacgtgcaggttagttacataggtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttaatattaggcatatctcctaatgctatccctccccgctcccTAGAAAAGAtttcttgtggagtttttaaaaagtactttgaaacaattctttttttt---ttttt--
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           173022 3323 +  18854210 I
e aotNan1.NW_018509740v1     360718 8892 -    457564 I
e cebCap1.NW_016107755v1     295242 1487 -   1771730 I
e calJac3.chrUn_GL286223      72479 3002 +    132061 I
e colAng1.NW_012115566v1    2697724 1007 -   3067355 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I
e panPan2.chr6             30144731  74 + 173848474 I

a score=69880.000000
s hg38.chr6_GL000254v2_alt   948278 79 +   4827813 tt-ttttttttcgatacagagttttgctcttgttgcccaggctagagtgcaatggcatgatctcggctcaccgcaacctc
s panTro5.chr6             29911066 80 + 175400573 ttctttttttttgatacagagtttcgctcttgttgcccaggctagagtgcaatggcatgatctcggctcaccgcaacctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30144805 79 + 173848474 tt-tttttttttgatacagagtttcgctcttgttgcccaggctagagtgcaatggcatgatctcggctcaccgcaacctc
i panPan2.chr6             I 74 C 0
s gorGor5.CYUI01015250v1    5944468 78 +   6154872 tt-tttttttttgatacagagtttcgctctt-ttgcccaggctagagtgcaatggcatgatctcggctcaccgcaacctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74661433 79 + 122973662 tt-tttttttttgatacagagtttcgctcttgttgcccaggctggagtgcaatggcatgatctcggctcaccgcaacctc
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           173022 3323 +  18854210 I
e aotNan1.NW_018509740v1     360718 8892 -    457564 I
e cebCap1.NW_016107755v1     295242 1487 -   1771730 I
e calJac3.chrUn_GL286223      72479 3002 +    132061 I
e colAng1.NW_012115566v1    2697724 1007 -   3067355 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=117473.000000
s hg38.chr6_GL000254v2_alt   948357 89 +   4827813 cgcctcccgggttcaagcgattctcctgcctcagcctccctagtagctggga-ttacaggcatgcaccaccatgcttggctaattttgta
s panTro5.chr6             29911146 89 + 175400573 cgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctggga-ttacaggcatgcaccaccatgcctggctaattttgta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30144884 90 + 173848474 cgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggatttacaggcatgcaccaccatgcctggctaattttgta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5944546 89 +   6154872 cgcctcccgggttcaagcgattctcctgcctcagcctcccaagtagctggga-ttacaggcatgcaccaccatgcctggctaattttgta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74661512 89 + 122973662 cgccacccggattcaagcgattctcctgcctcagcctcccaagtagctggga-ttacaggcatgcaccaccatgcctggctaattttgtt
i nomLeu3.chr1a            C 0 I 688
s colAng1.NW_012115566v1    2698731 89 -   3067355 cgcctcccaggttcaagcgattttcctgcctcagcctcccaagtagcaggga-ttacaggcatgtaccaccatgcctggctaattttgta
i colAng1.NW_012115566v1   I 1007 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           173022 3323 +  18854210 I
e aotNan1.NW_018509740v1     360718 8892 -    457564 I
e cebCap1.NW_016107755v1     295242 1487 -   1771730 I
e calJac3.chrUn_GL286223      72479 3002 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=42256.000000
s hg38.chr6_GL000254v2_alt   948446 40 +   4827813 ----------tttttagtagagatggggtttctccatgttggtcaggctg
s panTro5.chr6             29911235 40 + 175400573 ----------tttttagtagagatggggtttctccatgttggtcaggctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30144974 40 + 173848474 ----------tttttagtagagatggggtttctccatgttggtcaggctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5944635 40 +   6154872 ----------tttttagtagagatggggtttctccatgttggtcaggctg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74662289 40 + 122973662 ----------tttttttttgagacagagtctcgctctgtcgcccaggctg
i nomLeu3.chr1a            I 688 I 39
s colAng1.NW_012115566v1    2698820 50 -   3067355 tttttttgtatatttagtagagacaaggtttctccatgttggtcaggctg
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           173022 3323 +  18854210 I
e aotNan1.NW_018509740v1     360718 8892 -    457564 I
e cebCap1.NW_016107755v1     295242 1487 -   1771730 I
e calJac3.chrUn_GL286223      72479 3002 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=7550.000000
s hg38.chr6_GL000254v2_alt   948486 8 +   4827813 ttctcgaa
s panTro5.chr6             29911275 8 + 175400573 ttctcgaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30145014 8 + 173848474 ttctcgaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5944675 8 +   6154872 ttctcgaa
i gorGor5.CYUI01015250v1   C 0 C 0
s colAng1.NW_012115566v1    2698870 8 -   3067355 ttctcgaa
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           173022 3323 +  18854210 I
e aotNan1.NW_018509740v1     360718 8892 -    457564 I
e cebCap1.NW_016107755v1     295242 1487 -   1771730 I
e calJac3.chrUn_GL286223      72479 3002 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I
e nomLeu3.chr1a            74662329 39 + 122973662 I

a score=120949.000000
s hg38.chr6_GL000254v2_alt   948494 150 +   4827813 ctcccaacctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggcatgagctaccacgcccaacttaacaattcttacttcaaacatgtaagcatgacgttcctctccttcatgccttcctggcc---------------ttttttttttttt
s panTro5.chr6             29911283 165 + 175400573 ctcccgacctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggcatgagctaccacgcccaatttaacaattcttacttcaaacatgtaagcatgacgttcctctccttcatgccttcctggccattttttgttttgttttgttttgttttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30145022 160 + 173848474 ctcccgacctcaggtgatccacccacctcagcctcccaaagtgctgggattacaggcatgagctaccacgcccAATTTAacaattcttacttcaaacatgtaagcatgacgttcctctccttcatgccttcctggccatttttttgt-----ttttttttttttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5944683 149 +   6154872 ctcccgacctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggcatgagctaccacgcccaa-ttaacaattcttacttcaaacatgtaagcatgacgttcctctccttcatgccttcctggcc---------------ttttttttttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74662368  85 + 122973662 ctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccagcacgcccggctaa-------------------------------------------------------------------------tttttt-------
i nomLeu3.chr1a            I 39 C 0
s colAng1.NW_012115566v1    2698878 142 -   3067355 ctcccgacctcaggtgatctgtctgcctaagcctcccaaagtgctgggattataggcgtgagccaccacgcccAA-Caaacaattcttacttcaaacctgtaagcatgatctttctctcctttatgccttcctggcc---------------cttttt-------
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           173022 3323 +  18854210 I
e aotNan1.NW_018509740v1     360718 8892 -    457564 I
e cebCap1.NW_016107755v1     295242 1487 -   1771730 I
e calJac3.chrUn_GL286223      72479 3002 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=370621.000000
s hg38.chr6_GL000254v2_alt   948644 265 +   4827813 tttttttttttttgagacagag-tctcgct-tcttcacctaggctagcgtgcaatggtgt-gatcttggctcactg---caacctccacctcccaggttcaagcaattctcgtgcctcagcctccccagtagctgggattacaaccacatgccagcacgtccgactaatttttgtacttttagtagagat--gggggtttcactatgtaggccaggctggtctcgaactcctgacctcaggtgatccgctcgcctcggcctcccaaagtgctg
s panTro5.chr6             29911448 265 + 175400573 ttttgttttttttgagacagag-tctcgct-tcttcacctaggctagagtgcaatggtgt-gatcttggctcactg---caacctccacctcccaggttcaagcaattctcgtgcctcagcctccccagtagctgggattacagccacatgccagcacatccgactaatttttgtacttttagtagagat--gggggtttcactatgtaggccaggctggtctcgaactcctgacctcaggtgatccgctcgcctcggcctcccaaagtgctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30145182 265 + 173848474 tttttttttttttgagacagag-tctcgct-tcttcacctaggctagagtgcaatggtgt-gatcttggctcactg---caacctccacctcccaggttcaagcaattctcgtgcctcagcctccccagtagctgggattacagccacatgccagcacatccgactaatttttgtacttttagtagagat--gggggtttcactatgtaggccaggctggtctcgaactcctgacctcaggtgatccgctcgcctcggcctcccaaagtgctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5944832 264 +   6154872 tttttttttttttgagacagag-tctcgct-tcttcacctaggctagcgtgcaatggtgt-gatcttggctcactg---caacctccacctcccaggttcaagcaatactc-tgcctcagcctccccagtagctgggattacagccacatgccagcacgtccgactaatttgtgtacttttagtagagat--gggggtttcactatgtaggccaggctggtctcaaactcctgacctcaggtgatccgctcgcctcggcctcccaaagtgctg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74662453 231 + 122973662 ttgtattttagtagagacgggg-tttcact-gtgttagccagg----------atggtctcgatct-----------------cttgacctc----------gtgatcctcccgcctctgcctcccaaagtgctgggattacaggcgtgagccactgcgcccggctaatttttgtacttttagtagagat---ggggtttcactatgttggccaggctggtctcgaactcctgacctcaggtgatctgcctgcctcggcctcccaaagtgctg
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2699020 264 -   3067355 ---ttttctttttgagacagag-tctcact-tcttcacccaggctggagtgcaatggtgt-gattttggctcactg---caacctccacctcccaggttcaagcaattctcctgcctcagcctccccagtagctgggattacagcaatgtgccaggaagccctgctaatttttgtacttttagtagagatgggggggtctcactatgctggccaggctggtctcgaactcctgacctcaggtgatctgcccgcctcggcctcccaaagtgctg
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      75481 267 +    132061 tctttttttttttgagacagtgttttcgctgttgttacccagactggagtgcaatggcat-gatcttggctcaccgcaacaacctcagcctcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggactataggcgcgcaccaccatgcccagctgatttttgcatttttagtaaagac---agtgtttcaccttgttgaccaggatggtcttgatctcttgatctc--gtgatccacctgcctcagcctcccaaagtgcag
i calJac3.chrUn_GL286223   I 3002 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           173022 3323 +  18854210 I
e aotNan1.NW_018509740v1     360718 8892 -    457564 I
e cebCap1.NW_016107755v1     295242 1487 -   1771730 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=399273.000000
s hg38.chr6_GL000254v2_alt   948909 216 +   4827813 ggattacaagcgtaag--------ccaccgtgcctggcctggccctattttatctgggtctgacaaaagttatttcatcctagtatctgcaatttt--TCCGCAGAAAATTACAGAGACGCACAGTGAATGTGAAAGGAGGGAAATTAACAATAGctattggcagagccaaacaaatcattacactttag-----------------------------------------------------------ctggatc-----------atctgggagttgagac---cttgagggtataa
s panTro5.chr6             29911713 216 + 175400573 ggattacaagcgtaag--------ccaccgtgcctggcctggccctattttatctgggtctgacaaaagttatttcatcctagtatctgcaatttt--TCCGCAGAAAATTACAGAGACGCACAGTGAATGTGAAAGGAGGGAAATTAACAATAGCTATTGGCAGAGCCAAACAAATCATTACACTTTAG-----------------------------------------------------------CTGGATC-----------ATCTGGGAGTTGAGAC---Gttgagggtataa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30145447 216 + 173848474 ggattacaagcgtaag--------ccaccgtgcctggcctggccctattttatctgggtctgacaaaagttatttcatcctagtatctgcaatttt--TCCGCAGAAAATTACAGAGACGCACAGTGAATATGAAAGGAGGGAAATTAACAATAGCTATTGGCAGAGCCAAACAAATCATTACACTTTAG-----------------------------------------------------------CTGGATC-----------ATCTGGGAGTTGAGAC---Gttgagggtataa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5945096 215 +   6154872 ggattacaagcgtaag--------ccaccgtgcctggcctggccctattttatctgggtctgacaaaagttatttcatcctagtatctgcaatttt--TCCGCAGAAAATTACAGAGACGCACGGTGAATGTGAAAGGAGGGAAATTAACAATAGctattggcagagccaaacaaatcattacactttag-----------------------------------------------------------ctggatc-----------atctgggagttgagac----ttgagggtataa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74662684 217 + 122973662 agattacaagtgtgag--------ccactgcgcctggcctggccctattttatctgagtctgacaaaagttatttcatcctagcatctgcaatttt--tccacaGAAAATTACAGAGACACACAGTAAATGTGAAAGGAGGGAAATTAACAATAGctattggcagagccaaccaaatcgttacactttag-----------------------------------------------------------ctggatc-----------acctgggagttgagac--agtggggggtataa
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2699284 212 -   3067355 gaattataggcatgag--------ctactat-----gcctggctctattttatctgggtctgacacaagttatttcatcctactacctgcaatttt--tccacaGAAAATTGCAGAGACACACAGTGAGTGTGAAAGGAGGGAAATTAATAACGGCTATTGGCAGAGCCAACCAAATCATTTCACTTTAG-----------------------------------------------------------GTGGATC-----------ACCTGTGATTTGAGAT--GGTGGGAGGTATAA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      75748 217 +    132061 ggattataggtgtgag--------ccactgcgcccaaccTGgccctactttatctgggtctgacaaaagtgattttatcctggtttctgcaatttt--tccacaAACAATTATAGAAATGATCAGTGAATGTGAAAGGAGAGAAATTAACAATGGCTATGGGCAGAGCCAACCAAATCATTTCACTTTAG-----------------------------------------------------------CTGGGTC-----------ACCTGGGAGTTGAGAC--GGTGGGTGGTATAA
i calJac3.chrUn_GL286223   C 0 C 0
s otoGar3.GL873550           176345 295 +  18854210 gaaatacaagcatgagtttcctctcctttatgcct-tcctggccctattatgtctgagtctgacaaaaatgatttcatcttggtatttgcaactttcataCACACCAAATT--AGAGCCACACAGTGAATATGTGAAGAGGGAAATTCACAACGGCCATGGGCAGAA-TAGCCAAATCATTAAACTTTAGTTCACCTGAGGGGTAAAAAAGTAGGGGAGATAAGGAAGTGAGCGTTAATATTGTTAACCTTAGATcagcggttctcaacttgtgggttgcgacccctttgggggtctaa
i otoGar3.GL873550         I 3323 I 150
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e aotNan1.NW_018509740v1     360718 8892 -    457564 I
e cebCap1.NW_016107755v1     295242 1487 -   1771730 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=41160.000000
s hg38.chr6_GL000254v2_alt   949125 24 +   4827813 ggaggtagcatgtcaatgcttgtt
s panTro5.chr6             29911929 24 + 175400573 ggaggtagcatgtcaatgcttgtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30145663 24 + 173848474 ggaggtagcatgtcaatgcttgtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5945311 24 +   6154872 ggaggtagcatgtcaatgcttgtt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74662901 24 + 122973662 ggaggtagcatgtcaattcttgtt
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2699496 24 -   3067355 GGAGGTAGAGTGTCaatacttgtt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      75965 24 +    132061 GGGGGTAGAGTGTCAATTcttgtt
i calJac3.chrUn_GL286223   C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           176640 150 +  18854210 I
e aotNan1.NW_018509740v1     360718 8892 -    457564 I
e cebCap1.NW_016107755v1     295242 1487 -   1771730 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=10152.000000
s hg38.chr6_GL000254v2_alt   949149 3 +   4827813 aag
s panTro5.chr6             29911953 3 + 175400573 aag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30145687 3 + 173848474 aag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5945335 3 +   6154872 aag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74662925 3 + 122973662 aag
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2699520 3 -   3067355 aag
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      75989 3 +    132061 aag
i calJac3.chrUn_GL286223   C 0 I 306
s cebCap1.NW_016107755v1     296729 3 -   1771730 aag
i cebCap1.NW_016107755v1   I 1487 C 0
s aotNan1.NW_018509740v1     369610 3 -    457564 aag
i aotNan1.NW_018509740v1   I 8892 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           176640 150 +  18854210 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=60675.000000
s hg38.chr6_GL000254v2_alt   949152 19 +   4827813 aaagaatggcaacaactgt
s panTro5.chr6             29911956 19 + 175400573 aaagaatggcaacaactgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30145690 19 + 173848474 aaagaatggcaacaactgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5945338 19 +   6154872 aaagaatggcaacaactgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74662928 19 + 122973662 aaagaatggcaacaactgt
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2699523 19 -   3067355 aaagaatggcaacaactgt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      76298 19 +    132061 aaaggatggcaaccactgt
i calJac3.chrUn_GL286223   I 306 C 0
s cebCap1.NW_016107755v1     296732 19 -   1771730 aaagaatggcaacaactgt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     369613 19 -    457564 aaagaatggcaaccactgt
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e otoGar3.GL873550           176640 150 +  18854210 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=203488.000000
s hg38.chr6_GL000254v2_alt   949171 70 +   4827813 gctg-ccttacagatcagcaccttctgcagtctgcgagcc-caaccttagatccatttgtaggcaacagtaa
s panTro5.chr6             29911975 70 + 175400573 gctg-ccttacagatcagcaccttctgcagtctgcgagcc-caaccttagatccATTTGTAGGCAACAGTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30145709 70 + 173848474 gctg-ccttacagatcagcaccttctgcagtctgcgagcc-caaccttagatccATTTGTAGGCAACAGTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5945357 70 +   6154872 gctg-ccttacagatcagcaccttctgcagtctgcgagcc-caaccttagatccatttgtaggcaacagtaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74662947 70 + 122973662 gctg-ccttacagatcagcgcctcctgcagtctgcgggcc-caaccttagaaccatttgtaggcaacagtaa
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2699542 70 -   3067355 gctg-ccttacagagcagtacctcctacagtctgtgggtc-caaccttagatccatttctaggcaacagtaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      76317 71 +    132061 gctgtctttacagctcagtgcctcctgcagtctgtggggc-caaccttagatttgtttgtgggcaacagtaa
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     296751 71 -   1771730 gctgtttttacagctcagtgcctcctgcagtctgtggggc-caaccttagatccatttgtgggcaacagtaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     369632 71 -    457564 gctgtctttactgctcagtgcttcctgcagtctgtggggc-caaccttcgatTTGTTTGTGGGCAACAGTAA
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           176790 71 +  18854210 tctg-tattaaagggtcgcagcattaggaaggtgagaaccactgccttaCATCCATTTGGAGGCAACAGTAA
i otoGar3.GL873550         I 150 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            28773 6078 -    110772 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=3055235.000000
s hg38.chr6_GL000254v2_alt   949241 780 +   4827813 aaggtctcatattttcatcgcagtgagccctgactgccatcaggaagatttggtcctctaggtaagatttccc-tgagacaaagtactatgggaaatc--aagtgcatattcagcctcttagtactctgggttggtgttaccgtactgacgaaggcgatccattgatgaaaaacaaactgacctaaagaaatgtaaataaatgcttgcagtcagccctgttcctctgaaaaattcccctagcccttatgttgaaacctgatgagaacttt--aaaaatgttaacttggtaatggatggaatcctcctcattcaaggttacccctgtgcaagtcaagctcaagtcagcctgaaggtgcaaaccccatggactcagccag-agcctatggctgtgggtgctagatccaagg-----------ccaaaactgatggcatcagccatcaggatgtttctgcccaatataaagtattgggt-gggctgagaacactgaaagcttgccatgcagaaagaaactgaaagtaaatgcgtgac----tttaatggaacagaacttgtttctccctccatg--ctcccgatccctttagatccctttatctcacctcagccactttaagacaaaaggtgattagaGGTGTAGAGAAGTTCTAATGGGATACATTCATTTGCA------GTAG----TCCCCCAAGGTACtgtgataggcagaattctaaagatgctttccccctcaagattgcttcccctggttattcagtcaaatactaatcaaagtacagatgctcttcaatttaaaatggggttatgtttc
s panTro5.chr6             29912045 763 + 175400573 AAGGTCTCATATTTTCATCGCAGTGAGCCCTGACTGCCATCAGGAAGATTTGGTCCTCTAGGTAAGATTTCCC-TGAGAcaaagtactatgggaaatc--aagtgcatattcagcctcttagtactctgggttggtgttaccgtactgacgaaggcgatccattgatgaaaaacaaactgacctaaagaaatgtaaataaatgcttgcagtcagccctgttcctctgaaaaattcccctagcccttatgttgaaacctgatgagaacttt--aaaaatgttaacttggtaatgGATGGAATCCTCCTCATTCAAGGTTACCCCTGTGcaagtcaagc----------ctgaaggtgcaaaccccatggactcagccag-agcctatggctgtgggtgctagatccaagg-----------ccaaaactgatggcatcagccatcaggatgtttctgcccaatataaagtattgggt-gggctgagaacactgaaagcttGCCATGCAGAAAGAAACTGAAAGTAAATGTGTGAC----TTTAATGGAACAGAACTTGTT-------CCACG--CTCCCGATCCCTTTAGATCCCTTTATCTCACCTCAGCCACTTTAAGACAAAAGGTGATTAGAGGTGTAGAGAAGTTCTAATGGGATACATTCATTTGCA------GTAG----TCCCCCAAGGTACtgtgataggcagaattctaaagatgctttccccctcaagattgcttcccctggttattcagtcaaatactaatcaaagtacagatgcccttcaatttaaaatggggttatgtttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30145779 763 + 173848474 AAGGTCTCATATTTTCATCGCAGTGAGCCCTGACTGCCATCAGGAAGATTTGGTCCTCTAGGTAAGATTTCCC-TGAGAcaaagtactatgggaaatc--aagtgcatattcagcctcttagtactctgggttggtgttaccgtactgacgaaggcgatccattgatgaaaaacaaactgacctaaagaaatgtaaataaatgcttgcagtcagccctgttcctctgaaaaattcccctagcccttatgttgaaacctgatgagaacttt--aaaaatgttaacttggtaatgGATGGAATCCTCCTCATTCAAGGTTACCCCTGTGcaagtcaagc----------ctgaaggtgcaaaccccatggactcagccag-agcctatggctgtgggtgctagatccaagg-----------ccaaaactgatggcatcagccatcaggatgtttctgcccaatataaagtattgggt-gggctgagaacactgaaagcttGCCATGCAGAAAGAAACTGAAAGTAAATGTGTGAC----TTTAATGGAACAGAACTTGTT-------CCACG--CTCCCGATCCCTTTAGATCCCTTTATCTCACCTCAGCCACTTTAAGACAAAAGGTGATTAGAGGTGTAGAGAAGTTCTAATGGGATACATTCATTTGCA------GTAG----TCCCCCAAGGTACtgtgataggcagaattctaaagatgctttccccctcaagattgcttcccctggttattcagtcaaatactaatcaaagtacagatgcccttcaatttaaaatggggttatgtttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5945427 779 +   6154872 aaggtctcatattttcatcgcagtgagccctgactgccatcaggaagatttggtcctctaggtaagatttccc-tgagacaaagtactatgggaaatc--aagtgcatattcagcctcttagtactctgggttggtgttaccgtactgacgaaggcgatccattgatgaaaaacaaactgacctaaagaaatgtaaataaatgcttgcagtcagccctgttcctctgaaaaattcccctagcccttatgttgaaacctgatgagaacttt--aaaaatgttaacttggtaatggatggaatcctcctcattcaaggttacccctgtgcaagtcaagctcaagtcagcctgaaggtgcaaaccccatggactcagccag-agccaatggctgtgggtgctagatccaagg-----------ccaaaactgatggcatcagccatcaggatgtttctgcccaatataaagtattgggt-gggctgagaacactgaaagcttgccatgcagcaagaaactgaaagtaaatgtgtgac----tttaatggaacagaactggtttctccctccatg--ctcccgatccctttagatccctttatctcacctcagccactttaagacaaaaggtgattagaGGTGTAGAGAAGTTCTAATGGGATACATTCATTTGCA------GTAG----T-CCCCAAGGTACtgtgataggcagaattctaaagatgctttccccctcaagattgcttcccctggttattcagtcaaatactaatctaagtacagatgctcttcaatttaaaatggggttatgtttc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74663017 780 + 122973662 aaggtctcatattttcattgcagtgagccctggctgccatcaggaagatttggtcctctaggtaagattt-cc-tgagacaaagtactatgggaaatc--aagtgcata-tcagcctcttagtactctgggttggtgttaccgtactgacgaaggcgatccattgatgaacaacaaactgacctaaagaaatgtaaataaatgcttgcagtctgccctgttcctctgaaaaattcccctagcccttatgttgaaacctgatgagaactttaaaaaaatgttaACttggtaatggatggaatcctcctcattcaaggttacccctgttcaagtcaagctcaagtcagCCTGAAGGTgcaaaccccatggactcagccag-agcctatggctgtgggtgctagatccaagg-----------ccaaaaccgatggcatcagccatcaggatgtttctgcccaatataaagtactgggt-gggctgagaacattgaaagcttgccatgcagcaagaaactgaaagtaaatgtgcaac----tttaatggaacagaactggtttctccctccatg--ctcccgatccctttagatccctttatctcacctcagccactttaagacaaaaggtaattagaGGTGTAGAGAAGTTCTAATGGGATACATTCATTTGCA------GTAG----CCCACCAAGGTACtgtgataggcagaattctaaagatgctttccccctcaagattgcttcccctggttattcagtcaaatactaatctaagtacagatgcccttcaatttaaaatggggttatgtttc
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2699612 780 -   3067355 aaggtctcatattttcattgcagtgagccctggctgccatcaggaagatttggccctctaggtaagatttccc-tgagacaaagtactatgggaaatc--aagggcatatttggcctcttagtgtcctgggttagtgttaccctactgacgaaggtgatccattgatgaatgacaaactgacctaaagaaatgtaaataaatgcttgcagtcaaccctattcctctgaaaaattcccctagcccttgtgttgaaacctgatgagaactta--aaaaatgttaacttggtaatggatggaatcctcctcattcaatgttacccctatgcaagtcaagcttaagtcagcctgaaagtgcaaaccccatggcctcagccag-agcctatggctgtgggtgctagatccaagg-----------ccaaaaccgatggcatcagccatcaggatatcgctgccctgtataaagtactgggt-ggtctgagaacattgaaagcttGCCATGCAGCAAGAAACCAAAAGTAAATGTAGAAC----TGTAATGGAACAGAACTGGTTTCTCCCTCCATG--CTCCCGATCCCTTTAGATCCCTTTATCTCACCTCAGCCACTTTAAGACAAAAGGTGATTAGAGGCATAGAGAAGTTCTAATGGGATACATTCATTTGCA------GTAG----CCCCCCAAGGTACtgtgataagcagaattctaaagatgccttccccctcaagattccttcccctggttattcagtcaaatactaatataagtactgatgctcttcaatttaaaagggggttatgtttc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      76388 766 +    132061 aaggtctcaaattttcattgcagtgattcctggctgccatcaggaagatctggccctctaggtacgatttctc-tgagacaaagtactacgggaaatc--aagtgggcattcggcctcttagtgctctggattggtgttaccgtact---gaaggcgagccattgatgaacaacaaactgacctacagaaatctaaataaaggcttgtagtcagccctgttcctctgaaaaatttccctagcccttatgttgaaaactgatgaaaactt---aaacaagttaatttggtaacggatggaa---tcctcattcatggttacccctatgcaagtcaagctcaggtcagcctgaaggtgcaaaccccatggcctcag---------cat-------ggtggtagatccaagg-----------ccaaaaccgatggcatcagccatcaggatgttgctgcccagtataaggtactgggt-gggctgagaactttaaaagcttGCCATGCAGCAag-aactgaaagtaaatgtgaaac----tttaatggaacaggactggtttctccctccatgacccccaaatccctcaagattcctttatctcacctcagccactttaagacaagaggtgattagaGGTGTAGAGAAGTTCTAATGGGATACATTCATTTACAAATGTAGTAG---CCCCCACAAGATACtgtgataggcagaatcctaaagatgccttctccctcaagattccctcccctggttattcagtcaattgctaatctaagtacagatacttctcaatttaaaatggggttatgtctc
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            34851 783 -    110772 AAGGTCTCAAATTTTCATTGCAGTGATCCCTGGCTGCCGTCAGGAAGATCTGGCCCTCTACGTACGATTTCTC-CGAGACAAAGTACTACGGGAAGTC--AAGTGagcactcggtctcttagtgctctggattggtgttactatactgacgaaggcgagccattgatgaacaacgaactgacttacagaaatctaaatacaggcttgcagtcagccctgttcctctgaaaaatttccctagcccttatgttgaaacctgatgaaaact-------caaattaacttggtaacggatggaa---gcctcattcagggttacccctatgcaagtcaagctcaagtcagcctgaaggtgcaaaccccatggcctcagtcag-aggctatggctgtgggtgatagatccaaga-----------ccaaaaccgatggcatcagccatctggatgttgctgctccgtataaagtattgggt-gggctgagaactttgaaagcttgccacgaagcaag-aactgaaagtaaatgtgaaac----tttaatggaagagaactggtttctccctccatggcccccaaattgttttagatccttatatgtcacctcagccgctttaagacaaaaggtgattagaGGTATAGAGAAGTTCTAATGGGATACATTCATTTACAAATGTAGGAGCTCCCCCTCCAAGGTACtgtgataggcagaattctaaagatgccttctccctcaagattccttcctctggttattcagtcaattgctaatctaagtacagatgcttctcaatttaaaatggggttatgtctc
i saiBol1.JH378388         I 6078 C 0
s cebCap1.NW_016107755v1     296822 783 -   1771730 aaggtctcaaattttcattgcagtgatccctggctgccatcaggaagatctgaccctctaggtacaatttctcttgagacaaagtactaagggaaatc--aagtgtgcattcggcctcttagtgctctggattggtgttaccgtactgacaaaggtgagccatcaatgaacgacaaactgacctaaagaaatctaaataaaggcttgcagtcagccctgttcctctgaaaaattttcctagcccttatgttgaaaactgatgaaaactt---aaacaagttaacttggtaaaggatggaa---tcctcattcagggttacccctatgcaagtcaagctcaagtcagcctgaaggtgcaaaccccatggcctcagccag-agggtag-gctgtgggtggtagatccaagg-----------ccaaaaccgacggcatcagccatcaggatgttgctgccccgtataaa-tattgggt-gggctgagaactttgaaggcttgccatgcagcaag-aactgaaagtaaatgtaaaac----tttaatggaacagaactggtttctccatccatgaccctcaaatcgttttagatccctttgtctcacctcagccactttaagacaaaaggtgattagaGGTGTAGAGAAGTTCTAATGGGATATATTCATTTACAAATGTAGTAG---GCCCCCCAAGGTACAgtgataggcagaattctaaagatgacttctccctcaagattccctcccctggttattcggtcaattgctaatctaagtacagatgcttctcaatttaaaatggggttatgtctc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     369703 779 -    457564 GAGGTCTCAAATTTTCATTGCAGTGATCcctggctgccatcaggaagatctggccttctaggcacgatttctc-tgagacaaagtactacaggaaatt--aagtgcacattctgcctcttagttatctggattggtgttactgtactgacgaaggcgagccatcaacgaactacaaactggcctaaagaaatctaaataaaggcttgcagtcagccctgttcttctgaaaaatttccctagcccttatgttgaaacctgatgaaaa--------ACAAATTAACTTGGTAAGGGATGGAA---TCCCCATTCAGGGTTACCCCTGTGCAAGTCAAGCTCAAGTCAGCCTGAAGGTGCAAACCCCATGGCCTCAGCCAG-Cggccatggctgtgggtgggagatccaagg-----------ccaaaaccgatggcatcagccatcaggatgttgctgccccgtatcaagtattgggt-gggctgagaactttgaaagcttgccaagcagcaag-aactgaaagtaactgtgaaac----tttaatggagcagaactggtttctccctccatgacccccaaattcctttagatccttttatctcacctcagccactttaagacaaaaagtgattagaGGTGTAGAGAAGTTCTAATGGGATACATTCATTTACAAATGTCGTAG---CCCCCCCAAGGTACtgtgataggcagaattctaaagatgccttctccctcaagattccctcccctggttattcagtcaattgctaatctaagtacagatgcttctcagtttaaaatggggttatgtctc
i aotNan1.NW_018509740v1   C 0 C 0
s otoGar3.GL873550           176861 750 +  18854210 AAGCTTTCAGAGTTTT-TCACAGAGGATCCTATGTGCTATAAAGAAG-TTTGGCCCTCTAGAGAAGATTTCCC-TGAGACAAAGTACTGTGGCAAATCATAGGTGagtatgcaggcttttactgcccaggattggtgttacagtactgatggacgtgattc---------------cctggcctaaagaaatcttgatagacgctttcagttag-cctgacactctggaaagctcccctagcccttatgttgaaagctgatgagaac-----ataaatgttaacttggctatagctggac---tcctcattcaagtatacccctgtgcaagtcaaacccaagtcaccttgaggatgtaaaccttatggccttagccagaaagctatggctgt-cctggtgaatcaaagggttcccaaagcccaaaataggtggtgtcagccatgaggaccttgctgcccaatatagagcattgagtggggctgaaagcattggaagcttgccatgcatcaagaaactgaaagtaaatgtcaaactttgtttaatgccacagaactagtctctccctctgtg--tccccgatccctttaactccctttaccccacctcagccactttaaggaaaaagatgatcagaGGTGTAGAGAAGTTCTAATGGAATACA----------------GGGG--------------TATTATGATGGTTAGAATTCTAAAGATGCCCACCTTCTCAAGCTTTCCTCACC----TATTTACTCTAATATTAATTTAAGTACAGATGATCTTGGATTTAAGAAAAAGTTATATCCC
i otoGar3.GL873550         C 0 N 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=63694.000000
s hg38.chr6_GL000254v2_alt   950021 16 +   4827813 aataaaaccattgtaa
s panTro5.chr6             29912808 16 + 175400573 aataaaaccattgtaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30146542 16 + 173848474 aataaaaccattgtaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5946206 16 +   6154872 aataaaaccattgtaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74663797 16 + 122973662 gataaaaccattgtaa
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2700392 16 -   3067355 gataaaaccattgtaa
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      77154 16 +    132061 aataaaaccactgtaa
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            35634 16 -    110772 aataaaaccattgtaa
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     297605 16 -   1771730 aataaaaccattgtaa
i cebCap1.NW_016107755v1   C 0 I 318
s aotNan1.NW_018509740v1     370482 16 -    457564 aataaaaccattgtaa
i aotNan1.NW_018509740v1   C 0 I 317
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=-3355.000000
s hg38.chr6_GL000254v2_alt   950037 3 +   4827813 -ctg
s panTro5.chr6             29912824 3 + 175400573 -ctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30146558 3 + 173848474 -ctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5946222 3 +   6154872 -ctg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74663813 3 + 122973662 -gtg
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2700408 3 -   3067355 -gtt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      77170 3 +    132061 gtt-
i calJac3.chrUn_GL286223   C 0 I 313
s saiBol1.JH378388            35650 3 -    110772 gtt-
i saiBol1.JH378388         C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e aotNan1.NW_018509740v1     370498 317 -    457564 I
e cebCap1.NW_016107755v1     297621 318 -   1771730 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=30834.000000
s hg38.chr6_GL000254v2_alt   950040 8 +   4827813 aaaaatat
s panTro5.chr6             29912827 8 + 175400573 aaaaatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30146561 8 + 173848474 aaaaatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5946225 8 +   6154872 aaaaatat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74663816 8 + 122973662 aaaaatat
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2700411 8 -   3067355 aaaaatat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      77486 8 +    132061 aaaaatat
i calJac3.chrUn_GL286223   I 313 C 0
s saiBol1.JH378388            35653 8 -    110772 aaatatat
i saiBol1.JH378388         C 0 I 1263
s cebCap1.NW_016107755v1     297939 8 -   1771730 aaaaatat
i cebCap1.NW_016107755v1   I 318 C 0
s aotNan1.NW_018509740v1     370815 8 -    457564 aaaaatat
i aotNan1.NW_018509740v1   I 317 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=342539.000000
s hg38.chr6_GL000254v2_alt   950048 111 +   4827813 tttcaagtggaaaatgtatttaatgcacctaacctactgaatatattagctcagcctagcctaccttaaatgtgctcagaacacatttgcctacagttgggcaaaatcact
s panTro5.chr6             29912835 111 + 175400573 tttcaagtggaaaatgtatttaatgcacctaacctactgaatatattagctcagcctagcctaccttaaatgtgctcagaacacatttgcctacagttggggaaaatcact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30146569 111 + 173848474 tttcaagtggaaaatgtatttaatgcacctaacctactgaatatattagctcagcctagcctaccttaaatgtgctcagaacacatttgcctacagttggggaaaatcact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5946233 111 +   6154872 tttcaagtggaaaatgtatttaatgcacctaacctactgaatatattagctcagcctagcctaccttaaatgtgctcagaacacatttgcctacagttgggcaaaatcact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74663824 111 + 122973662 ttttaagtggaaaatgtatttaatacacctaacctactgaatatattagctcagcctagcctaccttaaatgtgctcagaacacattcacctacagttgggcaaaatcact
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2700419 111 -   3067355 ttcaaagtggaatatgtatttaatacacctaacctactgaatatattagctcagcctagcctaccttaaatgtgctcagaacacatttgcctacagttgggcaaaatcact
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      77494 111 +    132061 ttttaagtggaaaatgtatttagtacacctaacctactgaacatattagctcagcctagcctaccttaaatgtgctcagaacacatttggctacagttggtcaaaatcacc
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     297947 111 -   1771730 ttttaagtgaaaaatgtatttagtacacctaacctactgaacatattagctcagcctagcctaccttaaatgtgctcagaacacattcgcctacagttggtcaaaatcacc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     370823 110 -    457564 ttttaagtggaaaatgtatttagtacacctaacctactgaacatcttagctcagcctagcctaccttaaatgtgctcagaacacattcgcctac-gttggtcaaaatcacc
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            35661 1263 -    110772 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=2429493.000000
s hg38.chr6_GL000254v2_alt   950159 696 +   4827813 taacacaaatccccttgtatgataaagtgttgactatctcatgtaactggttgcatacagtacagtatagagtacagtatcagttg-ttaccatcataattgtgtggctgat-gggagctgcagctcactactgctgtccagcaccgtc-acagagtatcatactctctaacccaggaaaatatcaaaattcaaagtacagtttatactgaatgtgtgttgctttca---catcatcataaagttgaaaaactgtaagttgagccatcgtaaatcagggaccatctgcaccactatgtagggattatgctgttgtaattgaagtcccaagacaattgaccataaaacaggttatctggttgggcctgatctaaccacatgaactccttaaggggcag-aaaaaacaaagatcaaagagaagttgggaagattcaaagcaaaagaagtattcagtgtaccatggctgtgtttcaagatggaggtggccatgagcaaaagaatgcaggtaacttccagaagctgagagcaacccttggttgacagctagcaaggaaacaggaacctaattcctataatcacTTCTTCT-CCCCTTGTCTTCTTCCCTTTCTTCGTGTGTAAGCGCATTATACTATCTCTGTAAGCACA-AAAATTGCCTAAAATTTAAGTGTAGTTTTCTGATCGCTTGTAAAACTGACACAGCTAT
s panTro5.chr6             29912946 693 + 175400573 taacacaaatcccattgtatgataaagtgttgactatctcatgtaactggttgcatacagtacagtatagagtacagtgtcagttg-ttaccatcataattgtgtggctgat-gggagctgcagctcactactgctgtctagcaccgtc-acagagtatcatactctctaacccaggaaaatatcaaaattcaaagtacagtttatactgaatgtgtgttgctttca---catcatcataaagttgaaaatctgtaagttgagccatcgtaaatcagggaccatctgcaccactatgtagggattatgctgttgtaattgaagttccaagacaattgaccataaaacaggttatctggttgggcctgatctaaccacatgaactccttaaggggcag-aaaaaacaaagatcaaagagaagttgggaagattcaaagcaaaagaagtattcagtgtaccatggctgtgtttcaagatggaggtggccatgagcaaaagaatgcaggtaacttccagaagctgagagcaacccttggttgacagctagcaaggaaacaggaacctaattcctacaatcacTTCT----CCCCTTGTCTTCTTCCCTTTCTTCGTGTGTAAGCGCATTATACTATCTCTGTAAGCACA-AAAATTGCCTAAAATTTAAGTGTAGTTTTCTGATCGCTTGTAAAACTGACACAGCTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30146680 693 + 173848474 taacacaaatcccattgtatgataaagtgttgactatctcatgtaactggttgcatacagtacagtatagagtacagtgtcagttg-ttaccatcataattgtgtggctgat-gggagctgcagctcactactgctgtctagcaccgtc-acagagtatcatactctctaacccaggaaaatatcaaaattcaaagtacagtttatactgaatgtgtgttgctttca---catcatcataaagttgaaaatctgtaagttgagccatcgtaaatcagggaccatctgcaccactatgtagggattatgctgttgtaattgaagtcccaagacaattgaccataaaacaggttatctggttgggcctgatctaaccacatgaactccttaaggggcag-aaaaaacaaagatcaaagagaagttgggaagattcaaagcaaaagaagtattcagtgtaccatggctgtgtttcaagatggaggtggccatgagcaaaagaatgcaggtaacttccagaagctgagagcaacccttggttgacagctagcaaggaaacaggaacctaattcctacaatcacTTCT----CCCCTTGTCTTCTTCCCTTTCTTCGTGTGTAAGCGCATTATACTATCTCTGTAAGCACA-AAAATTGCCTAAAATTTAAGTGTAGTTTTCTGATCGCTTGTAAAACTGACACAGCTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5946344 692 +   6154872 taacacaaatcccattgtatgataaagtgttgactatct-atgtaactggttgcatacagtacactatagagtacagtatcagttg-ttaccatcataat--tgtggctgat-gggagctgcagctcactactgctgtccagcaccatc-agagagtatcatactctctaacccaggaaaatatcaaaattcaaagtacagtttatactgaat-tgtgttgctttca---catcatcataaagttgaaaaactgtaagttgagccaccgtaaatcagggaccatctgtaccactatgtagggattatgctgttgtaattgaagtcccaagacaattgaccataaaacaggttatctggttgggcctgatctaaccacatgaactccttaaggggcag-aaaaaacaaagatcaaagagaagttgggaagattcaaagcaaaagaagtattcagtgtatcatggctgtgtttcaagatggaggtggccatgagcaaaagaatgcaggtaacttccagaagctgaaagcaacccttggttgacagctagcaaggaaacaggaacctaattcccacaatcacTTCTTCT-CCCCTTGTCTTCTTCCCTTTCTTCATGTGTAAGCACATTATACTATCTCTGTAAGCACA-GAAATTGCCTAAAATTTAAGTGTAGTTTTCTGATCGCTTGTAAAACTGACACAGCTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74663935 693 + 122973662 taacacaaatcccactgtatgataaagcgttgactatctcatgtaactggttgcatacagtacactgtagagtacagtatcagttg-ttaccatcataattgtgtggctgat-gggagctgcagctcactactgctgtccagcaccatc-agagactatcatactctctaacccaggaaaatatcaaaattcaaagtacagtttatactgaatgtgtgttgctttca---catcatcataaagttgaaaaaccataagttgagccatcgtaaatcagggaccatctgtaccactatgtagggattatgctgttgtaattgaagtcccaagacaattgaccataaaacaggttatctggttgggcctgatctaaccacatgaactccttaagaggcag-aaaaaacaaagatcaaagagaagttgggaagattcaaagcaaaagaagtattcactgtaccatggctgtctttcaagatggaggtagccatgagcaaaagaatgcaggtaacttccagaaactgagagcaaccgttggttgacagctagcaaggaaacaggaacctaattcctacaatcacTTCT----CCCCCTGTCTTATTCCCTTTCTTCGTGTGTAAGCACATTATACTATCTTGGTAAGCACAGAAAATTGCCTAAAATTTAAGTGTAGTTTTCTGATC-CTTATAAAACTGACACAGCTGT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2700530 695 -   3067355 taacacaaatcccattgtatgataaagtgttgactaactcatgtaactggttgcatacagtacactgtagagtacagtatcagttg-ttaccatcattattgtgtggctgat-gggagctgcagctcactgctgctgtccagcaccatc-acagagtatcatactctctaacccaggaaaatatcaaaattcaaagtacagtttatactgaatgtgtgttgctgtca---catcatcataaagttgaaaaaccgtaagttgagccatcataaatcagggaccatctgtaccactatgcagggattatgctgttgtaattgaagtcccaagacaattgaccataaaataggttatctggttgggcctgatctaatcacatgaactccttaagaggcagaaaaaaacaaagatcgaagagaaattgggaagatgcaaagcaaaagaagtattcagtgtaccatggctggctttcaagatggaggtggccatgagcaaaagaatgtaggcaatttccagaagccgagagcaacccttggttgacagttagcaaggaaacaggaacctaattcctgcaatcacTTCTTCT-CCCCTT---TTCTTCCCTTTCTTCGTGTGTAAGCACATTATCCTATCTCTGTAAGCACAGAAAATTGCCTAAAATTTAAGTGTAGTTTTCTGATCGCTTATAAAACTGACACAGCAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      77605 657 +    132061 taacggaaatcctattgtatgac--agtgttgacgacctcaggtaactcgtcgcatacagcatactgtagagtacagtatcagctgtttaccatcacaattgtgtggctgatggggagttgcagctcacaactgctgtctagcaccattcagagagtatcatattctctaa--caggaaaatatcaaaatgcaaaatgcagtttatactgaatgtgtattgctttcacatcatcatcataaagttgaaaaacgttacgttgagccatcgtaaattggggaccatatggaccactatgcagggattatgctgttgcaattgaagtcccaagtcagttgaccataaaacagtttatctggttgggcctgatctaaccacatgaactccctaataggaag-aaaaagcaaagattgaagagaa------------------------------------------gttggctttcaaaatggaggcagccatgaacaaaagaatgcaggcgacttccagaagctgagagcaacccttggttgacagctagcaaggaaacaggaacctaattcctacaatcacTGCTTCT-CCCCTTATCTTCTTCCCTTTCTTCATGTGTGAGCAAACTATACTATCCCTGTAAGCACAGAAAATTGTCTAAAATTTAAGTGTAGTTTTCTGATTACCTTTAAAAGAGACACAGCTGC
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            36924 696 -    110772 taacagaaatcctattgtgtgat--agtgttgactacctcaggtaactcgttgcatacagcatactgtagagtacagtatcagctgtttaccatcatagttgtgtggctgatggggagttgtggctcacaactgctgtctagcaccatg-agagagtatcatactctctaacccaggaaaatatcaaaatgcacaatgcagtttatactgaatgtgtattgctttca---cattatcataaagttgaaaaatgttacgttgagccatcgtaaatcggggaccatcAGGATCActatgcagggattatgctgttgtaattgaagtcccaagtcaattgaccataaaacagtttatctggttgggcctgatctaaccacatgaactccttaataggaag-aaaaagcaaagattgaagagaagttggaaagattcaaagcaaaagaattattcagtgcaccatggttggctttcaaaatggaggcagccatgagcaaaagaatgcaggcaacttccagaagctgagagcaacccttggttgatagctagcaaggaaacaggaacctaattcccacaatcacTACTTCT--CCCTTATCTTCTTCCCTTTCTTCGTGTGTGAGCAAACTATACTATCCCTGTAAACACAGAACATTGTCTAAAATTTAAGTGTAGTTTTCTGATTGCCTTTAAAGGAGACACAGCTGC
i saiBol1.JH378388         I 1263 C 0
s cebCap1.NW_016107755v1     298058 697 -   1771730 taacagaaatcctatcgtatgat--agtgttgactacctcaggtaacttattgcatacagcatactatagagtacagtatcagctgtttaccatcataattgtgtggctgatggggagttgcggctcacaactgctgtctagtaccatg-acagagtatcacactctctaacccaggaaaatatcaaaatgtaaaatgcagtttatactgaatgtgtattgctttca---catcatcataaagttgaaaaatgttaaattgagccattgtaaatcggggaccatctggaccactacacagggattatgctgttgtaattgaagtcccaagtcaattgaccataaaatgggttatctggttgggcctgatctaagcacatgaactccttaataggaag-aaaaagcaaagattaaagagaagttgggaagattcaaagcaaaagaattattcagtgcaccacggctggctttcaaaatggaggcagccatgagcaaaagaatgcaggcaacttccagaagttgagagcaacccttggttgacagatagcaaggaaacaggaacctaattcctacaatcacTGCTTCT-CCCCTTATCTTCTTCCCTTTCTTCGTGTGTGAGCAAACTATACTATCCCTGTAAGCACAGAAAATTGTCTAAAATTTAAGAGTAGTTTTCTGGTTGCCTTTAAAAGAGACACAGCTGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     370933 689 -    457564 taacagaaatcctattgtatgat--agtgttgactacctcaggtaacttgttgcatacagcatactgtagagtacagtatcagctgtttaccatcgtaattttgtggctgatggggagttgcggctcacgactgctgtctagcaccgtg-agagagtatcatactctctaacccaggaaaatatcaaaatgcaaaatgcagtttatactgaatgtgtattgctttca---catcatcataaagttgaaaaacgttaagttgagccattgtaaattggggaccatttggaccactacgcagggattatgctgttgtaattgaagtcccaagtcaattgaccataaaacaggttttctggttgggcctgatctaaccacatgaactccttaacaggaag-aaagagcaaagattgaagagaagttgggaagattcaaagcaaaagaattattcagtgtaccacggctggctttcaaaatggaggcagccatgagcaaaagaatgcaggcaacttccagaagctgagagcaacccttggttgacagctggcaaggaaacaggaacctaattcctacaatcacTGCTTCTCCCCTTTATC---------TTCTTCATGTGTGAGCAAACTATACTATCCCTGTAAGCACAGAAAATTGCCTACAATTTAAGTGTAGTTTTCTGATAGCCTTTAAAAGAGACACAGCTGC
i aotNan1.NW_018509740v1   C 0 C 0
e mm10.chr17               57984200 5364 -  94987271 I
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=1062621.000000
s hg38.chr6_GL000254v2_alt   950855 280 +   4827813 AATTATCATCCATGTTAAAAACACCATCCCAGTTAGAAACCTGTGAGCCTCTCCCCAAGCAGAACCCATTTATCCTA----CACAGGTG---TCATCAGAGCTG---------------ATTCCTTTCTATGC---CCCTTTATCTCTAATGTCCCTATTC----------TGCTCCTGTTTTCACTTCACCAGCAGCTTCTCCAACTCCCTAGGCCAATGCCCTGAGAATTTCCCTTCCTCTCCCCCATCCTAGGGATGGAGAG-TAGGGGTTGGTCCCCAGGATAAGCCACATTTATCCCTGGAAGCAGCAGCA
s panTro5.chr6             29913639 280 + 175400573 AATTATCATCCATGTGAAAAACACCATCCCAGTTAGAAACCTGTGAGCCTCTCCCCAAGCAGAACCCATTGATCCTA----CACAGGTG---TCATCAGAGCTG---------------ATTCCTTTCTATGC---CCCTTTATCTCTAATGTCCCTATTC----------TGTTCCTGTTTTCACTTCACCAGCAGCTTCTCCAACTCCCTAGGCCAATGCCCTGAGAATTTCCCTTCCTCTCCCCCATCCTAGGGATGGAGAG-TAGGGGTTGGTCCCCAGGATAAGCCACATTTATCCCTGGAAGCAGCAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30147373 280 + 173848474 AATTATCATCCATGTGAAAAACACCATCCCAGTTAGAAACCTGTGAGCCTCTTCCCAAGCAGAACCCATTGATCCTA----CACAGGTG---TCATCAGAGCTG---------------ATTCCTTTCTATGC---CCCTTTATCTCTAATGTCCCTATTC----------TGTTCCTGTTTTCACTTCACCAGCAGCTTCTCCAACTCCCTAGGCCAATGCCCTGAGAATTTCCCTTCCTCTCCCCCATCCTAGGGATGGAGAG-TAGGGGTTGGTCCCCAGGATAAGCCACATTTATCCCTGGAAGCAGCAGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5947036 280 +   6154872 AATTATCATCCATGTGAAAAACACCATCCCAGTTAGAAACCTGTGAGCCTCTCCCCAAGCAGAACCCATTGATCCTA----CACAGGTG---TCATCAGAGCTG---------------ATTCCTTTCTATGC---CCCTTTATCTCTAATGTCCCTATTC----------TGTTCCTGTTTTCACTTCACCAGCAGCTTCTCCAACTCCCTAGGCCAATGCCCTGAGAATTTCCCTTCCTCTCCCCCATCCTGGGGATGGAGAG-TAGGGGTTGGTCCCCAGGATAAGCCACATTTATCCCTGGAAGCAGCAGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74664628 283 + 122973662 AATTATCATCCATGCGAAAAACACCACCCCAGTTAGAAACCTGTGAGCCTCTCCCCAAGCAGAGCCCATTGATCCTA----CACAGGTGTCATCATCAGAGCTG---------------ATTCCTTTCTATGC---CCCTTTATCTCTAATGTCCCTATTC----------TGTTCCTGTTTTCACTTCACCAGTAGCCTCTCCAACTCCCTAGGCCAATGCCCTGAGAATTTCCTTTCCTCTCCCCCATCCTAGGGATGGAGAG-TAGGGGTTGGTCCCCAGGATAAGCCACATTTGTCCCTGGAAGCAGCAGCA
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2701225 280 -   3067355 AATTATCATCCATGCAAAAAACACCACCCCAGTTAGAAACCTGTGAGCTTCTCCCCAAGCAGAACCCATTGATCCTA----CACAGGTG---TCATCAGAGCTG---------------ATTCCTTTCTACGC---CCCTTTATCTCTAATGTCCCTATTC----------TGTTCCTGTTTTCACTTCACCAGCAGCCTCTCCATCTCCCCAGGCCAATGTCCTGAGAATTTCCTTTCCTCTCCCCCATCCCAGGGGTGGAGAG-TAGGAGTTGGTCCCCAGGATAAGCCACATTTATCCCTGGAAGCAGCAGCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      78262 278 +    132061 AATTATCATCCATGTGAAAAACAGCACCT--GTTAGAAACCTGTGAGCCTCTCCCCAAGCAGAACCCACTGATCCTA----CACAGGTG---TCATCGGAACTG---------------ATGCCTTTTTATGC---CCCTTTCTCTTTAATGTTCCTTTTC----------TGTTCCTGCTTTCACGTCACCAGCAGCCTCTCCGTCTCCTTAGGCCAATACCCTGAGAATTTCCTTTCCTCTCCCCCATCCTAGGGATGGAGAG-TAGGGGTTGATCCTCAGGATAAGCCACGTTTATCTCTGGAAGCAGCAGCA
i calJac3.chrUn_GL286223   C 0 C 0
s saiBol1.JH378388            37620 277 -    110772 AATTATCATCCATGTGAAAAACAGCACCT--GTTAGAAACCTGTGAGCCTCT-CCCAAGCCGAACCCACTGATCCCA----CACAGGTG---TCATCGGAGCTG---------------ATGCCTTTCTATGC---CCCTTTCTCTCTAATGTCCCTGTTC----------TGTCCCTGTTTTCACGTCACCAGCAGCCTTTCCATCTCTTTGGGCCAATACCCTGAGAATTTCCTTTCCTGTCCCCCATCCTACAGATGGAGAG-TAGGGGTTGGTCCTCAGGATAAGCCACATTTCTCCCTGGAAGCAGCAGCA
i saiBol1.JH378388         C 0 M 5473
s cebCap1.NW_016107755v1     298755 278 -   1771730 AATTATCATCCATGTGAAAAACAGCACCT--GTTAGAAACCTGTGAGCCTCTCCCCAAGCAGAACCCACTGATCCTA----CACAGGTG---TCATTGGAGCTG---------------ATGCCTTTCTATGC---CCCTTTCTCTCTAATGTCCCTGTTC----------TGTTCCTGTTTTCACGTCACTAGCAGCCTCTCCATCTCCTTGGGCCAATACCCTGAGAATTTCCTTTCCTCTCCCTCATCCTAGGGATGGAGAG-TAGGGGTTGGTCCTCAGGATAAGCCACATTTATCCCTGGAAGCAGCAGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     371622 273 -    457564 AATTATCATCCATGTGAAAAACAGCACCT--GTTAGAAATCTGTGAGCCTCTCCCCAAGCAGAACCCACTGATCCTA----CACAGGTG---TCATCGGAGCTG---------------ATGCCTTTCTATGC---CCCTTTCTCCCTAATGTCCCTATTC----------TGTTCCTGTTTTCAAGTCACCAGCAACCTGTCCATCTCTTTAGGCCAATACCCTGAGAA-----TTTCCTCTCCCCTATCCTAGGGTTGGAGAG-TAGGGGTTGGTCCTCAGGAAAAGCCACATTTCTCCCTGGAAGCAGCAGCA
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57989564 289 -  94987271 AGTCACTATCCATGTGAAAAGCAGAGCTTGAGCTAGAAGAACTTAACCCTGTCTCCAA-TAGGACCC----ATCCCAGAAGCATTAATG---TCCCCACTGCTAAACTTCCGGTGGTGCATTCTTCTCGATTTCCACCCAGCATTCCTTTTGTCCTCCCTCCCAGGCTCAATTTACCTATTTTGACTTC---TGTGACCTCCTTGTCGTCCCTGGACCTTGCCCTGGGTGGCTC-TGGCTCCTCCCCCATCTTATTTGTGGAAAGTTCTGGGCTTGTTCCCAGGAGGAG--------------GGAAGTTCTAGC-
i mm10.chr17               I 5364 C 0
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=154303.000000
s hg38.chr6_GL000254v2_alt   951135 52 +   4827813 GAAGTGACAGTATGTTTGTGGGGTCCACTTGTAACCTGGGAACCACTTGTTT
s panTro5.chr6             29913919 52 + 175400573 GAAGTGACAGTATGTTTGTGGGGTCCACTTGTAACCTGGGAACCACTTGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30147653 52 + 173848474 GAAGTGACAGTATGTTTGTGGGGTCCACTTGTAACCTGGGAACCACTTGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5947316 52 +   6154872 GAAGTGACAGTATGTTTGTGGGGTCCACTTGTAACCTGGGAGCCACTTGTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74664911 52 + 122973662 GAAGTGACAGTATGTTTGTGGGGTCCACTTGTAACCTGGGAACCACCTGTTA
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2701505 52 -   3067355 GAAGTGACAGTCTGTTTGTGGGGTCCACTTGTAACCTGGGAATCACCTGTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      78540 52 +    132061 GAAGTGATAGTATGTTCATGGGGTCCACTCGTAACCTGGCAACCACCTGTTA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     299033 52 -   1771730 GAAGTGATAGTATGTTTGTGGGGTCCACTCGAAACCTGGCAACCACCTGTTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     371895 52 -    457564 GAAGTGACAGTATGTTTGTGGGGTCCACTCGTAACCTGGCAACCACCTGTTA
i aotNan1.NW_018509740v1   C 0 C 0
s mm10.chr17               57989853 28 -  94987271 ------------------------CCAAATGGAAGCTACAAACTAGCTGTGT
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     664126 1510 +    730504 I
e saiBol1.JH378388            37897 5473 -    110772 M
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=692215.000000
s hg38.chr6_GL000254v2_alt   951187 199 +   4827813 ---TGGCCTGGAAACCTCGCTCTGTCCCGAGGTCAGAATCCACGGTCACTAGGTGGAGAGGAAACATCTATGTCAGCGTGGATTTGGGAAACACTTCAGATTCCGAGCCTAACACGGGACTGGGGCGCCCCCTTGGGTACGTTGTCCTGTCC-----AGTTGCTGAAAGCCAAAGGTGACAATGGGGAGGTCTCAACCTGAGGAGGA
s panTro5.chr6             29913971 199 + 175400573 ---TGGCCTGGAAACCTCGCTCTGTCCCGAGGTCAGAATCCACGGTCACCAGGTGGAGAGGAAACATCTATGTCAGCGTGGATTTGGGAAACACTTCAGATTCCGAACCTAACACGGGACTGGGGCGCCCCCTTGGGTACGTTGTCCTGTCC-----AGTTGCTGAAAGCCAAAGGTGACAATGGGGAGGTCTCAACCTGAGGAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30147705 199 + 173848474 ---TGGCCTGGAAACCTCGCTCTGTCCCGAGGTCAGAATCCACGGTCACCAGGTGGAGAGGAAACATCTATGTCAGCGTGGATTTGGGAAACACTTCAGATTCCGAACCTAACACGGGACTGGGGCGCCCCCTTGGGTACGTTGTCCTGTCC-----AGTTGCTGAAAGCCAAAGGTGACAATGGGGAGGTCTCAACCTGAGGAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5947368 199 +   6154872 ---TGGCCTGGAAACCTTGCTCTGTCCCGAGGTCAGAATCCACGGTCACTAGGTGGAGAGGAAACATCTATGTCAGCGTGGATTTGGGAAACACTTCAGATTCCGAACCTAACACGGGACTGGGGCGCCCCCTTGGGTACGTTGTCCTGTCC-----AGTTGCTGAAAGCCAAAGGTGACAATGGGGAGGTCTCAACCTGAGGAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74664963 194 + 122973662 ---TGGCCTGGAAACCTCGCTCTGTCCCGAGGTCAGAATCCATGCTCACTAGGTGGAGAGGAAACATC--TGTCAGCGTGGATTTGGGAAACACTTCAGATTCCAAACTTAACACAGAACTGGGGCGCCCCCTTGGGTACGTTGTCCTGTCC-----AGTTGCTGAAAGCCAGGGGTGACAATGGGGAGGTCTCAACCT---GAGGA
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2701557 196 -   3067355 ---TGGCCTGGAAACCTTGCTCTCTCCCGAGGTCAGAATCCATGGTCACTAGGTGGAGAGGAAACATCTATGTCAGTGTGGATTTGGGAAACATTTCAAATTCCAAACCTAACACGAGACTGGGGCGCCCCCTTGGGTATGTTGTCCTGTCC-----AGTTGCTGAAAGCCAGGGATGACAATGGGGAGGTCTCAACCT---GAGGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      78592 196 +    132061 ---TGGCCTGTTAACCTTGCTCTGTCCTGAGGTCAGAGTCCACAGTCACTAGGAGGAGAGGAAACATCTATGTCAGCTTGGATTTGGGAAACACTTCCAATTCCCAACTTAACCTGGGACTGGGGTGCCCCCTTGTGTACATCATCCTGTCC-----AGTTACTGAAAGCCAAGGGTGACAATGGGGAGGTCTCAACCA---GTGGA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     299085 196 -   1771730 ---TGGCCTGGAAACCTTGCTCTATCCTCAGGTCAGAGTCCACGGTCACTAGGCGGAGAGGAAACATCTATGTCAGCTTGGATTTGGGAAACACTTCAGATTCCAAACCTAACATGGGACTGGGGCGCCCCCTTGTGTACATCGTCCTGTCC-----AGTTACTGAAAGCCAAGGGTGACAATGGGGAGGTCTCAACCA---GTGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     371947 196 -    457564 ---TGGCCTGGAAACCTTGCTCTGTCCTGAGGTCAGAGTCCACGGTCACTAGGCGGAGAGGAAACATGTATGTCAGCTTGGATTTGGGAAACACTTCGGAATCCAAACCTAACATGGGACTGGGGCGCCCCCTTGTGTACATCGTCCTGTCC-----AGTTACTGAAAGCCAAGGGTAACAACGGGGAGGTCTCAACCA---GAGGA
i aotNan1.NW_018509740v1   C 0 C 0
s proCoq1.NW_012152574v1     665636 191 +    730504 ---tggcctggagacct--ctctgccctgaggtcagagtccgcggtcactcagtggaaaggacacacctatgtcagcggGGATTTGGGGAACACTT-----TGCGAACCTGACACGTGATGGAGGCG-CTCCTTGTGTACGTAGCCCTGTCC-----AGTTGCTGGGAGCCAAGGGTGACCCCGGGGAGGTCCCGACTTGAGGAGGA
i proCoq1.NW_012152574v1   I 1510 I 653
s mm10.chr17               57989881 155 -  94987271 AGTCAAGCTGGAGAC----TTGTATCATGA-ATCAGAGTCCACCATCACTCAAAGAAGAGGACACATCTGTGTTTGCCTAGATTTGGGAAGCAC-TCAGACTCTG---TTAGCACTTGA------CACTGCTTTGAGTTCTGAGTCAGGTCTCAGGAAGTTTCTGTAAGA-------------------------------------
i mm10.chr17               C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=367567.000000
s hg38.chr6_GL000254v2_alt   951386 120 +   4827813 GGCCAAAAGAGTCCGGTCTTCTGTTCTCAGCCCGGTGACCACACACAAGTGCCGATGTTCTGCTCTCTTGGAT----TCTGATTGAGCAGC--CTGGGAGAGGACTGGGCTGCAGTCTAAACTGGA
s panTro5.chr6             29914170 120 + 175400573 GGCCAAAAGAGTCCGGTCTTCTGTTCTCAGCCCGGCGACCACACACAAGTGCCGATGTTCTGCTCTCTTGGAT----TCCGATTGAGCAGC--CTGGGAGAGGACTGGGCTGCAGTCTAAACTGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30147904 120 + 173848474 GGCCAAAAGAGTCCGGTCTTCTGTTCTCAGCCCGGTGACCACACACAAGTGCTGATGTTCTGCTCTCTTGGAT----TCCGATTGAGCAGC--CTGGGAGAGGACTGGGCTGCAGTCTAAACTGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5947567 120 +   6154872 GGCCAAAGGAGTCCGGTCTTCTGTTCTCAGCTCGGTGACCACACACAAGTGCCGATGTTCTGCTCTCTTGGAT----TCTGATTGAGCAGC--CTGGGAGAGGACTGGGCTGCAGTCTAAACTGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74665157 120 + 122973662 GGCCAAAGGGGTCCGGTCTTCTGTTCTCAGCCCGGTGACCACATATGAGTGCCAATGTTCTGCTCTCTTGGAT----TCTGATTGAGCAGC--CTGGGAGAGGACTGGGCTGCAGTCTAAACTAGA
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2701753 120 -   3067355 GGCCAAAGGGGTCCGGTCTTCTGTTCTCAGCCCGGTGACCACACACGGGTGCCGATATTCTGCTCTCTTGGAT----TCAGATTGAGCAGC--CTGGGAGAGGACTGCGCTGTAGTCTAAACTGGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      78788 120 +    132061 GGCCAAAGGGGTCCCGTCTTCTGTTCTCAGTCGGGTGACCCCACACAGGCTCCGATGCTATGCTCTCTTGGCT----TCTGACTGAGGAGC--CTGGGAGGGGACTGGGCTGCAGTCTGAACTGGT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     299281 120 -   1771730 GGCCAAAGGGGTTCCGTCTTCTGTTCTCAGCCGGGTGACCACACACAGGCACCGATGTTCTGCTGTCTTGGCT----TCTGACTGAGCAGC--CTGGAAGGGGACATGGCTGCAGTCTGAACTGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     372143 120 -    457564 AGCCAAAGGGGTCCTGTCTTCTGTTCTCAGCTGGGTGACCACACACAGGCGCCGATGCTCTGCTCTCTTGGAT----TCTGACTGAGCAGC--CTGGGAGAGGACTGGGCTGCGGTCTAAACTGGA
i aotNan1.NW_018509740v1   C 0 I 164
s mm10.chr17               57990036 117 -  94987271 GGTTGTAGG------GTCTTCTAGCCTCAATATCACGGCCACACGAGGGCGCTGCTGCTCTGACCTCTCAGATTGTGTCTGATTGGGAATCAGTTGGAAGTGGCCT--ACTGAAACCTGGA-TGGA
i mm10.chr17               C 0 C 0
e proCoq1.NW_012152574v1     665827 653 +    730504 I
e saiBol1.JH378388            37897 5473 -    110772 M
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=97909.000000
s hg38.chr6_GL000254v2_alt   951506 47 +   4827813 CAGATATGGCTGGTGTGGAGG-----CTGGCTGT-----------CAATGAGGGAGTGAAGGT
s panTro5.chr6             29914290 47 + 175400573 CAGATATGGCTGGTGTGGAGG-----CTGGCTGT-----------CAATGAGGGAGTGAAGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30148024 47 + 173848474 CAGATATGGCTGGTGTGGAGG-----CTGGCTGT-----------CAATGAGGGAGTGAAGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5947687 47 +   6154872 CAGATATGGCTGGTGTGGAGG-----CTGGCTGT-----------CAATGAGGGAGTGAAGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74665277 47 + 122973662 CAGATATGGCTGGCGTGGAGG-----CTGGGTGT-----------CAATGAGGGAGTGAAGGT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2701873 47 -   3067355 TAGAGGTGGCTGGCGTGGAGG-----CTGGGTGT-----------CAATGAGGGGGTGAAGGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      78908 47 +    132061 TAGAGGTGGCTGGTGTGAAGC-----CTGAGTGT-----------CAATGAGGGGGTAAAGGT
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     299401 46 -   1771730 TAAAGCTGGCTGGTGTGAAGC-----CTGAGTGT-----------CAATGA-GGGGTGAAGGT
i cebCap1.NW_016107755v1   C 0 I 150
s mm10.chr17               57990153 63 -  94987271 CAAGGGTGGTTAGGAATGAGATGTTTCTGACCACCCAGATCTACGCAGTAGGTGGAAGAAAGT
i mm10.chr17               C 0 I 2
e proCoq1.NW_012152574v1     665827 653 +    730504 I
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     372263 164 -    457564 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=14504.000000
s hg38.chr6_GL000254v2_alt   951553 9 +   4827813 AAGCCGCCC
s panTro5.chr6             29914337 9 + 175400573 AAGCCGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30148071 9 + 173848474 AAGCCGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5947734 9 +   6154872 AAGCCGCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74665324 9 + 122973662 GAGCCGCCC
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2701920 9 -   3067355 GAGCCACCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      78955 9 +    132061 GAGCAGCCC
i calJac3.chrUn_GL286223   C 0 I 139
s mm10.chr17               57990218 9 -  94987271 GAGCTGTTA
i mm10.chr17               I 2 C 0
e proCoq1.NW_012152574v1     665827 653 +    730504 I
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     372263 164 -    457564 I
e cebCap1.NW_016107755v1     299447 150 -   1771730 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=209433.000000
s hg38.chr6_GL000254v2_alt   951562 166 +   4827813 --GAAAAGTAGATAATTTTTAC-----TTCCACTTTCTTTTTCTTTCCTG--AGCACTAGTTATAAAAATATCCTTTTAAAATCTAAAATATTggccaggcacggtggctcacacttgtaatcccagcact----------ttgggaggccgaggcagatggat-----tacctgaggtggggggtttga
s panTro5.chr6             29914346 166 + 175400573 --GAAAAGTAGATAATTTTTAC-----TTCCACTTTCTTTTTCTTTCCTG--AGCACTAGTTATAAAAATATCCTTTTAAAATCTAAAATATTggccaggcacggtggctcacacttgtaatcccagcact----------ttgggaggccgaggcagatggat-----tacctgaggtggggggtttga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30148080 166 + 173848474 --GAAAAGTAGATAATTTTTAC-----TTCCACTTTCTTTTTCTTTCCTG--AGCACTAGTTATAAAAATATCCTTTTAAAATCTAAAATATTggccaggcacggtggctcacacttgtaatcccagcact----------ttgggaggccgaggcagatggat-----tacctgaggtggggggtttga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5947743 166 +   6154872 --GAAAAGTAGATAATTTTTAC-----TTCCACTTTCTTTTTCTTTCCTG--AGCACTAGTTATAAAAATATCCTTTTAAAATCTAAAATATTggccaggcacggtggctcacacctgtaatcccagcact----------ttgggaggccgaggcagatggat-----tacctgaggtggggggtttga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74665333 165 + 122973662 --GAAAAGTAGATAATTTTTAC-----TTCCACTTTC-TTTTCTTTCCTG--AGCACTAGTTATAAAAATATCCTTTTAAAATCTAAAATATTgaccgggcacggtggctcacacctgtaatcccagcact----------ttgggaggccgaggtgggcggat-----cacccgaggtcaggggtttga
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2701929 166 -   3067355 --GAAAAGTTGGTAATTTTTAC-----TTCCACTTTCTTTTTCTTTCCTG--AGCACCAGTTATAAAAATATCCTTTTAAAATGTAAAATATTggctgggcacagtggctcacacctgtaatctcagcact----------ttggaaggctgaggcgggcggat-----cacctgaggttgggggttcga
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57990227 152 -  94987271 GAAGGAATCCTGTAGTATCTCTGAGTATTCCCCTCTCCATCTGTTTGCTGTCAACACTGG------------------AAAATGGAACAGATTG-------------------CTTTGTTGTTCCAGTTTCTGTTGGTTAGTTGTGGGGTAGAGACAG-TGTATATATGCACACAGAgcaggggattcaa
i mm10.chr17               C 0 I 182
e proCoq1.NW_012152574v1     665827 653 +    730504 I
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     372263 164 -    457564 I
e cebCap1.NW_016107755v1     299447 150 -   1771730 I
e calJac3.chrUn_GL286223      78964 139 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=218855.000000
s hg38.chr6_GL000254v2_alt   951728 165 +   4827813 gaccagcctgaccaatatggagaaatcctctctctactaaaaatacaaaattagccgggcatggtggtgcattcctgtaatcccagctactcaggaggctgaggcaggagaatctcttgagcctgggaggtggaggttgcggtgagccaagatcgcgccattgca
s panTro5.chr6             29914512 165 + 175400573 gaccagcctgaccaatatggagaaatcctctctctactaaaaatacaaaattagccgggcatggtggtgcattcctgtaatcccagctactcaggaggctgaggcaggagaatctcttgagcctgggaggtggaggttgcggtgagccaagatcgcgccattgca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30148246 165 + 173848474 gaccagcctgaccaatatggagaaatcctctctctactaaaaatacaaaattagccgggcatggtggtgcattcctgtaatcccagctactcaggaggctgaggcaggagaatctcttgagcctgggaggtggaggttgcggtgagccaagatcgcgccattgca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5947909 165 +   6154872 gactagcctgaccaagatagagaaatcctctctctactaaaaatacaaaattagccgggcatggtggtgcattcctgtaatcccagctactcaggaggctgaggcaggagaatctcttgagcctgggaggtggaggttgcggtgagccaagatcgcgccattgca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74665498 165 + 122973662 gaccagcctgaccaacatggagaaatcccgtctctactaaaaatacaaaattagccgggcgtggtggtgcattcctgtaatcccagctactcaggaggctgaggcgggagaatcgcttgagcccgggaggtggaggttgtggtgagccaagatcgtgccattgca
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2702095 165 -   3067355 gaccagcctgaccaacatggagaaatcccgtctctactaaaaatgcaaaattagctgggcgtggtggtaccttcatgtaatcccagctactcagaaggctgaggcaggagaattgcttgagcctgggcggtggaggttgcgatgagccaagatcgcgccattgca
i colAng1.NW_012115566v1   C 0 I 189
e mm10.chr17               57990379 182 -  94987271 I
e proCoq1.NW_012152574v1     665827 653 +    730504 I
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     372263 164 -    457564 I
e cebCap1.NW_016107755v1     299447 150 -   1771730 I
e calJac3.chrUn_GL286223      78964 139 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=11730.000000
s hg38.chr6_GL000254v2_alt   951893 8 +   4827813 ctccagcc
s panTro5.chr6             29914677 8 + 175400573 ctccagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30148411 8 + 173848474 ctccagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5948074 8 +   6154872 ctccagcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74665663 8 + 122973662 ctccagcc
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2702449 8 -   3067355 ctccagcc
i colAng1.NW_012115566v1   I 189 C 0
e mm10.chr17               57990379 182 -  94987271 I
e proCoq1.NW_012152574v1     665827 653 +    730504 I
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     372263 164 -    457564 I
e cebCap1.NW_016107755v1     299447 150 -   1771730 I
e calJac3.chrUn_GL286223      78964 139 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=129117.000000
s hg38.chr6_GL000254v2_alt   951901 105 +   4827813 tgggcaacaagagcaaaactccgtct---------caaaaatcaaatcaaatc---aaatcaaatcaaatctacaatatttttggatt-tacagaaaagttgcaaagatagtacatag
s panTro5.chr6             29914685 100 + 175400573 tgggcaacaagagcaaaactccgtct---------caaaaaTGAAATCAAATC---AAATCAAAtc-----tacaatatttttggatt-tacagaaaagttgcaaagatagtacatag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30148419 100 + 173848474 tgggcaacaagagcaaaactccgtct---------caaaaaTGAAATCAAATC---AAATCAAAtc-----tacaatatttttggatt-tacagaaaagttgcaaagatagtacatag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5948082 100 +   6154872 tgggcaacaagagtaaaactccgtct---------caaaaaTTAAATCAAATC---AAATCAAAtc-----tacaatatttttggatt-tacagaaaagttgcaaagatagtacatag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74665671  84 + 122973662 tgggcaacaagagcaaaactcAA-------------------------AAATC---AAATCAAATC-----CACaatatttttggatt-tacagaaaagttgcaaagatactacatag
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2702457 100 -   3067355 tgggcaacaagagcaaaactccgttt---------caaaaatcaaatcaaatc---aaatcaaatc-----TACaatatttttggatt-tacagaaaagttgcaaagatagtacatag
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57990561 113 -  94987271 tggatcacaagtctgcaacttcagcttcTCTGTAACACACACATAAATAAATCTTAAAATAAAATT-----TAGGATGCTTTTATTTTCCCCAGAGAAACTGCAAAGGTAATATATAG
i mm10.chr17               I 182 I 205
e proCoq1.NW_012152574v1     665827 653 +    730504 I
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     372263 164 -    457564 I
e cebCap1.NW_016107755v1     299447 150 -   1771730 I
e calJac3.chrUn_GL286223      78964 139 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=46182.000000
s hg38.chr6_GL000254v2_alt   952006 39 +   4827813 ttctcctatgttccacattcagtttcccctattattaat
s panTro5.chr6             29914785 39 + 175400573 ttctcgtatgttccacattcagtttcccctattattaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30148519 39 + 173848474 ttctcgtatgttccacattcagtttcccctattattaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5948182 39 +   6154872 ttctcgtatgttccacattcagtttcccctattatgaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74665755 39 + 122973662 ttctcgtatgttccacattcagtttcccctattattaat
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2702557 35 -   3067355 tactcatatgttcca----cagtttcccctattattaac
i colAng1.NW_012115566v1   C 0 C 0
e mm10.chr17               57990674 205 -  94987271 I
e proCoq1.NW_012152574v1     665827 653 +    730504 I
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     372263 164 -    457564 I
e cebCap1.NW_016107755v1     299447 150 -   1771730 I
e calJac3.chrUn_GL286223      78964 139 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=308841.000000
s hg38.chr6_GL000254v2_alt   952045 212 +   4827813 gtcttattttattatacatttgtgacaggttatgaaacaatattgatacattgttactaactcctattttatttggattttattcttttccctaacatcacttttatgttccaggatcccaaccaggatacattacatttagtcccctttatatctcctta-gcctcctctggtctgtgacaatttctcaga----cctcgtttttgataatttggt
s panTro5.chr6             29914824 212 + 175400573 gtcttattttcttatacatttgtgacaggttatgaaacaatattgatacattgttactaactcctattttatttggattttattcttttcactaacatcacttttatgttccaggatcccatccaggatacattacatttagtcccctttatatctcctta-gcctcctctggtctgtgacaatttctcaga----cctcatttttgataatttggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30148558 212 + 173848474 gtcttattttcttatacatttgtgacaggttatgaaacaatattgatacattgttactaactcctattttatttggattttattcttttcactaacatcacttttatgttccaggatcccatccaggatacattacatttagtcccctttatatctcctta-gcctcctctggtctgtgacaatttctcaga----cctcatttttgataatttggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5948221 212 +   6154872 gtcttattttattatacatttgtgacaggttatgaaacaatattgatacattgttactaactcctattttatttggattttattcttttccctaacatcacttttatgttccaggatcccatccaggatacattacatttagtccccttcatatctcctta-gcctcctctggtctatgacaatttctcaga----cctcgtttttgataatttggt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74665794 210 + 122973662 gtcttattttattatacatttgtgacaggttatgaaacaatattg--acattgttactaactcctattttatttggattttattcttttccctaacatcacttttatgttccaggatcccatccaggatacattacatttagtccccttcatatctcctta-gcctcctctggtctgtgacaatttcttcga----cctcgtttttgataatttggt
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2702592 212 -   3067355 gtcttattttattatacatttgtgacagattatgaaacaatattgatacattgttactaactcctattttatttggattttattctttttcctgacgtcacttttatgttccaagatcccatccaggatacattacatttagtccctttcatagctcctta-gcctcctctggtctgtgacaatttctcaga----cctcatttttgataatttggt
i colAng1.NW_012115566v1   C 0 C 0
s mm10.chr17               57990879 205 -  94987271 ATCTCACATCACCAtacatt--ttataacccatgaaactatatggacacac--ttatttatacatattttatttacactcttcagttgttactaatgtcctttttttttcctaggacgttatccaaggcaccacacactcggtctcagttg---atccttagggctcctctg-----tgacaatttctctgattttcctagattttgataaccctga
i mm10.chr17               I 205 C 0
e proCoq1.NW_012152574v1     665827 653 +    730504 I
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     372263 164 -    457564 I
e cebCap1.NW_016107755v1     299447 150 -   1771730 I
e calJac3.chrUn_GL286223      78964 139 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=264975.000000
s hg38.chr6_GL000254v2_alt   952257 147 +   4827813 atttcttgaggagtactagtgaggcatattgtaaaatgtcccttaatttgagtgtggttgac-agggctataggtttgggggaagaagagcacagagatgaaatgcaatactctcaatacaacataccaagagtgtatattacccagt
s panTro5.chr6             29915036 147 + 175400573 atttcttgaggagtactggtgaggcatattgtacaatgtcccttaatttgagtgtggttgac-agggctatagatttgggggaagaagagcacagagatgaaatgcaatactctcaatacaacataccaagagtgtatattacccagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30148770 147 + 173848474 atttcttgaggagtactggtgaggcatattgtaaaatgtcccttaatttgagtgtggttgac-agggctatagatttgggggaagaagagcacagagatgaaatgcaatactctcaatacaacataccaagagtgtatattacccagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5948433 147 +   6154872 atttcttgaggagtactggtgaggcatattgtaaaatgtcccttaatttgagtgtggttgac-agggctataggtttgggggaagaagagcacagagatgaaatgcaatactctcaatacaacataccaagagtgtatattacccagt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74666004 147 + 122973662 attttttgaggagtactggtgaggcatattgtaaaatctcccttaatttgagtgtgcttgac-agggctataggtttgggggaagaagaacacagagatgaaatgcaatactctcaatacaacataccaagagtgtatattacccagt
i nomLeu3.chr1a            C 0 I 305
s colAng1.NW_012115566v1    2702804 147 -   3067355 attttttgaggaatactggtgaggcatattgtaaaacatcccttaatttgagtgtggttgac-agggctataggtttgggggaagaagagcacagagatgaaatgcaatactctcagtacaacataccaagagtgtatattacccagt
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     666480 142 +    730504 attttttgagcagtactggccaggcacattgtagaatgtcccttgattttagtttggttgactggggctatgggtttgggagaataatatcacagagatgaaatacaatactctcaatacagtgtaccaaga--atatattact----
i proCoq1.NW_012152574v1   I 653 C 0
s mm10.chr17               57991084 132 -  94987271 aacttttgaggaggactagccccacatactgatgaatgttatttgacttaagtttgact----gGGACCATGCATTT-----AAGAAGTCCAGAGAGGCAAAATG--ATGCC-----TGCACcgtgtcaaggttgtgcaccatgctct
i mm10.chr17               C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     372263 164 -    457564 I
e cebCap1.NW_016107755v1     299447 150 -   1771730 I
e calJac3.chrUn_GL286223      78964 139 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=18115.000000
s hg38.chr6_GL000254v2_alt   952404 9 +   4827813 tgatttatc
s panTro5.chr6             29915183 9 + 175400573 tgatttatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30148917 9 + 173848474 tgatttatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5948580 9 +   6154872 tgatttatc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74666456 9 + 122973662 tgatttagc
i nomLeu3.chr1a            I 305 C 0
s colAng1.NW_012115566v1    2702951 9 -   3067355 ggatttatc
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     666622 9 +    730504 tggtttacc
i proCoq1.NW_012152574v1   C 0 C 0
s mm10.chr17               57991216 9 -  94987271 tgatttgtc
i mm10.chr17               C 0 N 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     372263 164 -    457564 I
e cebCap1.NW_016107755v1     299447 150 -   1771730 I
e calJac3.chrUn_GL286223      78964 139 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=268723.000000
s hg38.chr6_GL000254v2_alt   952413 159 +   4827813 aaatgattatgttaacctccatcacttggctagggcagtgtttcccagTCTATAATATATAATTTTTAATAGCAGCCCAAAAAGACTAAAACACTTGCCCTTGCATGAAGAACCCTGTCTGACTTCTGGGAGCCCAAGGAGACGCAGGGGAGGTCCACA
s panTro5.chr6             29915192 159 + 175400573 aaatgattatgttaacctccatcacttggctagggcagtgtttcccagtctataatatataatttttaatagcagcccaaagagactaaaacaCTTGCCCTTGCATGAAGAACCCTGTCTGACTTCTGGGAGCCCAAGGAGATGCAGGGGAGGTCCACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30148926 159 + 173848474 aaatgattatgttaacctccatcacttggctagggcagtgtttcccagtctataatatataatttttaatagcagcccaaagagactaaaacaCTTGCCCTTGCATGAAGAACCCTGTCTGACTTCTGGGAGCCCAAGGAGATGCAGGGGAGGTCCACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5948589 159 +   6154872 gaatgattatgttaacctccatctcttggctagggcagtgtttcccagtctatgatatataatttttaacagcagcccaaagagactaaaacaCTTGCCCTTGCATGAAGAACCCTGTCTGACTTCTGGGAGCCCAAGGAGACGCAGGGGAGGTCCACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74666465 159 + 122973662 aaatgattatgttaacctccatcacttagctagggcagtgtttcccagtctatgatatatatttttaaatagcagcccaaagagactaaaacaCTTGCCCCTGCATGAAGAACCCTGTCTGACTTCTGGGAGCCCAAGGAGACGCAGGGGAGGTCCCCA
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2702960 159 -   3067355 aaacgattatgttaacctccatcactaggctagggcagtgtttcccagtctatggtatatattttttaatagcagcccaaagagactaaaacaCTTGTCCTTATATGAAGAACCCTGTCTGACTTCTGGGAGCCCAAGGAGATCCAGGGGAGGTCCACA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     666631 156 +    730504 aaatgataatgttagccttcctcgcctggctaaggtagtgtttcctagtctatgataact--tttgttatagcagcccaaagaggctaagacaCTT-CCCTTGTGTACAAAACCCTGTCTGACTTCTAGGAGCCCAGGAAGACCCTGGGGAGGTCCACA
i proCoq1.NW_012152574v1   C 0 I 118
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     372263 164 -    457564 I
e cebCap1.NW_016107755v1     299447 150 -   1771730 I
e calJac3.chrUn_GL286223      78964 139 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=153164.000000
s hg38.chr6_GL000254v2_alt   952572 115 +   4827813 GCGAGAAGAAAAGGGGGCTCAGGTCGTCTGTCCTCAGGTCTATGGCCACTTGGGGGTGGCACCTCTCTGGTGTCTCAGACACAAATTGAGCAATCAGAAAAGGCTGGGATGTCTG
s panTro5.chr6             29915351 115 + 175400573 GCGAGAAGAAAAGGGGGCTCAGGTCGTCTGTCCTCAGGTCTATGGCCACTTGGGGGTGGCACCTCTCTGGTGTCTCAGACACAAATTGAGCAATCAGAAAAGGCTGGGATGTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30149085 115 + 173848474 GCGAGAAGAAAAGGGGGCTCAGGTCGTCTGTCCTCAGGTCTATGGCCACTTGGGGGTGGCACCTCTCTGGTGTCTCAGACACAAATTGAGCAATCAGAAAAGGCTGGGATGTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5948748 115 +   6154872 GCGAGAAGAAAAGGGGGCTCAGGTCGTCTGTCCTCAGGCCTATGGCCACTTGGGGGTGGCACATCTCTGGCGTCTCAGACACAAATTGAGCAATCAGAAAAGGCTGGGATGTCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74666624 115 + 122973662 GCGAGAAGAAAAGGGGGCTCAGGTCGTCTGTCCTCAGGCCTATGGCCACTTGGGGGTGCCACTTCTCTGGTGTCTCAGACACAAATCGAGCAATCAGAAAAGGCTGGGATGTCTG
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2703119 115 -   3067355 GTGAGAAGAAAAGAGGACTCAGGTCATCTGTCCTCAGGCTTATGGCCACATAGGGGTGCCACCTCTCTGGTGTCTCAGACACAAATCGAGTAATCAGAGAAGGCTGGGATGTCTG
i colAng1.NW_012115566v1   C 0 C 0
e proCoq1.NW_012152574v1     666787 118 +    730504 I
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     372263 164 -    457564 I
e cebCap1.NW_016107755v1     299447 150 -   1771730 I
e calJac3.chrUn_GL286223      78964 139 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=56805.000000
s hg38.chr6_GL000254v2_alt   952687 29 +   4827813 TGGTCTGAGTTGGGCAGAGGTGGCTGACC
s panTro5.chr6             29915466 29 + 175400573 TGGTCTGAGTTGGGCAGAGGTGGCTGACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30149200 29 + 173848474 TGGTCTGAGTTGGGCAGAGGTGGCTGACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5948863 29 +   6154872 TGGTCTGAGTTGGGCAGAGGTGGCTGACC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74666739 29 + 122973662 TGGTCTGAGTTGGGCAGAGGTGGCTGACC
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2703234 29 -   3067355 TGGTCTGAGTTGGGCAGAGGTGGCTGACA
i colAng1.NW_012115566v1   C 0 C 0
s proCoq1.NW_012152574v1     666905 29 +    730504 TGGTCTGAGTTGGGCGGAGGTGGCTGACC
i proCoq1.NW_012152574v1   I 118 N 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     372263 164 -    457564 I
e cebCap1.NW_016107755v1     299447 150 -   1771730 I
e calJac3.chrUn_GL286223      78964 139 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=650041.000000
s hg38.chr6_GL000254v2_alt   952716 522 +   4827813 CTGGAACCTGACATCAATAGGGGGATGAAGACAATTTCTGAGCAGCCCCAGT---------AGTCAGAGGACAAGAGAACTCTGGAGCCCCGCACTGTCTCTGAGGTTCCAATCTTTTCTCCCTCTTCCCAGCCCCTTGATAGGAAACCCTGGGAAAACTAAAAAGTATACTGTTTTTTCTTTAACTCCCTATTCCTTTCCTCTTCTGAGGGTTGTTGTTGTTGTttttttttaataaacttattaattttagaatacttttagattacacaaaagttgaaaagataatacatagttctcacatatgtcacactcagctccccattgttaacatatttttttttttttt-----gagggagtctcactctgtcgcccaggctgaagtgcagtggcacgatttcggctcactgcaacctctgcctccgggtttcaagccattctcctgcctcagcctcctgagtagctaggattacaggtgcgcgccaccatgcccagctagtttttgtagttttagtaaagacagggttccaccac
s panTro5.chr6             29915495 524 + 175400573 CTGGAACCTGACATCAATAGGGGGATGAAGACAATTTCTGAGCAGCCCCAGT---------AGTCAGAGGACAAGAGAACTCTGGAGCCCCGCACTGTCTCTGAGGTTCCAATCTTTTCTCCCTCTTCCCAGCCCCTTGATAGAAAACCCTGGGAAAACTAAAAAGTATACTGTTTTTTCTTTAACTCCCTATTCCTTTCCTCTTCTGAGGGTTGTTGTTGTTGtttttttt-aataaacttattaattttagaatacttttagattacacaaaagttgcaaagataatacatagttctcacatatgtcacactcagctccccattgttaacatttttttttttttttt--tttgagggagtctcactctgtcgcccaggctgaagtgcagtggcacgatttcggctcactgccacctctgcctccgggtttcaagccattctcctgcctcagcctcctgagtagctaggattacaggtgcgcgccaccatgcccagttagtttttgtagttttagtaaagacagggttccaccac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30149229 520 + 173848474 CTGGAACCTGACATCAATAGGGGGATGAAGACAATTTCTGAGCAGCCCCAGT---------AGTCAGAGGACAAGAGAACTCTGGAGCCCCGCACTGTCTCTGAGGTTCCAATCTTTTCTCCCTCTTCCCAGCCCCTTGATAGAAAACCCTGGGAAAACTAAAAAGTATACTGTTTTTTCTTTAACTCCCTATTCCTTTCCTCTTCTGAGGGTTGTTGTTGTTGtttttttt-aataaacttattaattttagaatacttttagattacacaaaagttgcaaagataatacatagttctcacatatgtcacactcagctccccattgttaacatttttttttttttgtt------agggagtctcactctgtcacccaggctgaagtgcagtggcacgatttcggctcactgccacctctgcctccgggtttcaagccattctcctgcctcagcctcctgagtagctaggattacaggtgcgcgccaccatgcccagttagtttttgtagttttagtaaagacagggttccaccac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5948892 517 +   6154872 CTGGAACCTGACATCAATAGGGGGATGAAGACAATTTCTGAGCAGCCCCAGT---------AGTCAGAGGACAAGAGAACTCTGGAGCCCTGCACTGTCTCTGAGGTTCCAATCTTTTCTCCCTCTTCCCAGCCCCTTGATAGAAAACCGTGGGAAAACTAAAAAGTCTACTGTTTTTTCTTTAACTCCCTATTCCTTTCCTCTTCTGAGG------GTTGTTTtttttttt-aataaacttatttactttagaatacttttagattacacaaaagttgcaaagataatacatagttctcacatatgtcacactcagctccccattgttaacatatttttttttttttt---ttgagggagtcttactctgtcgcccaggctgaagtgcaatggcacgatttcggctcactgcaacctctgcctccgggtttcaagccattctcctgcctcagcctcctgagtagctaggattacaggtgcgcaccaccatgcccagctagtttttgtagttttagtaaaaacagagttccaccac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74666768 527 + 122973662 CTGGAACCTGACATCAATAGGGGGATGAAGACAATTTCTGAGCAGCCCTAGT---------AGTCAGAGGACAAGAGAACTCAGGAGCCCTGCACTGTCTCTGAGGTTCCAGTCTTTTCTCCCTCTTCCCAGCCCCTTGATGGAAAACCCTGGGAAAACTAAAAAGTATACTGTTTTTTATTTAACTCCCTATTGCTTTCCTCTTCTGAGGATTGTTATTGTTGTttttcttaaatacacttatttattttagaatacttttagattacacaaaagttgcaaagataatacatagttctcatatatgtcacactcagttccccattgttaatatctttttttttttttttttttaatggagtctcactctgtcgcccaggctgaagtgcagtggcacaatttcggctcactgcaacctctgcccccggggttcaagccattctcctgcctcagcctcccgagtagctaggattacaggtacgtgccaccatgcccagctagtttttgtatttttagtaaagacagggtttcaccac
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115566v1    2703263 519 -   3067355 CTGGAGCCTGACATCAATAGGGGGATGAAGACAATTTCTGAGCAGCCCCAGTCTCCCCAGGAGTCAGAGGACAAGAGAGCTCTGGAGCCCTGCACTGTCCCTGAGGTTCCAATCTTTTCTCCCTCTTCCCAGCCCCTTGATAGAAAACCCTGGGAAAACTAAAAAGTGCACAGTCTTTTCTTTAACTCCCAATTCCTTTCCTCTTCTGAGGGT--------TTTATtttttt-aataaacttatttattttagaatacttttagattacacaaaagttgcaaaggtaatacatggctctcagatatgtcaccctcagttccccattgttaacatcttttttttttta-------gaaggagtctcactctgtcacctaggctgaagtgcagtggcacgatttcagctcactgcaaactctgcctcaggg-ttcaagcaattctcctgtctcagcctcctgagtagctagaattacaggtgcaagccactatgcccagctagtttttgtatttttcataaagacatggtttcaccaC
i colAng1.NW_012115566v1   C 0 I 9005
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     372263 164 -    457564 I
e cebCap1.NW_016107755v1     299447 150 -   1771730 I
e calJac3.chrUn_GL286223      78964 139 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=103731.000000
s hg38.chr6_GL000254v2_alt   953238 118 +   4827813 attggccaggctggtctcgaactcctgacctcaggtgatctacccgc-tcagcttcccaaagtgctggcattacaggtgtgtgccactgcccccagccccattgttaacatcttatatc
s panTro5.chr6             29916019 119 + 175400573 attggccaggctggtctcaaactcctgacctcaggtgatctacccgccttggcttcccaaagtgctggcattacaggtgtgtgccactgcccccagccccattgttaacatcttatatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30149749 119 + 173848474 attggccaggctggtctcaaactcctgacctcaggtgatctacccgccttggcttcccaaagtgctggcattacaggtgtgtgccactgcccccagccccattgttaacatcttatatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5949409 119 +   6154872 gttggccaggctggtctcgaactcctgacctcaggtgatctacccgcctcggcttcccaaagtgctgggattacaggcgtgtgccactgcccccagccccattgttaacatcttatatc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74667295 119 + 122973662 cttggccaggctggtctcgaactcctgacctcaggtgatctacccgcctcagcttcccaaagtgatgggattacaggcgtgtgccaatgcccctggccCCATTGTTAACATCTTATATC
i nomLeu3.chr1a            C 0 I 766
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     372263 164 -    457564 I
e cebCap1.NW_016107755v1     299447 150 -   1771730 I
e calJac3.chrUn_GL286223      78964 139 +    132061 I
e colAng1.NW_012115566v1    2703782 9005 -   3067355 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I

a score=1358353.000000
s hg38.chr6_GL000254v2_alt   953356 2472 +   4827813 actattatacatttttcacaaccagtgagacaatattaatatagtatcactaaactttatttcgatttcattagctctttctgttttgaaacaaagtcttgctctgtcacccaggccggagtgcaatggcatgatgtccactcactgcaacctccacctcccgagttcaaatgattttcatgcctcagcctcctgaatagctgtgactacagacacatgccaccgtgcctggctgatttctgtatttttagtagagacaggatttcaccatgttggtcaggctggtctcttactcctgacctaaagtgatccacccgccttggcctcccaaagtgctaggattacaggtgtgagccaccatgcccagccaggtttcattagttcttttaacttcctttttctgtcacaggatttcatcgaggatatcacattgtatttagtcctaatcatgtctccttaaggctcctccaggttgACTTTGTTTTCAATGACtgtcttagtatgttgagtattactataacagaataacttgaaactgggtagtttataaagagaagatgtttatttagctcatgattttgcaggctgggaagttcaacaggatagtgctggatctggcaaacttctggtgaaggccaaatgttaggtcaaaacattttggagaaggggaaaagtgagtggcatgtgcaaaaacatcacatggggagacagggaagcaagagagagtctaggaaaccaaacttgcttttataacaacctgctttttggtaactaacctagccccaacagagtaataaattactcgctcatgtgggaggacattaatctattcatgaaggatctgctcctgatgacccaaacgcctcccactaagccccacctccaacaccaccaccacattgagaac--tTTTTTTTTTTTGcctgaggttgggagtttgagaccagcctcaccaacatggataaaccctgtctctactaaaaatagaaaattagccaggtgtgatggcacatgcctgtaatcccagttattcaggaggctgaggcaggagaattgcttgaacccgggaggtggaagttgcagtgagccaagatcatgccattgcactccagcctgggcaacaagagtgaaactctgtctcaaagaaa---aaaaaaaaagagtaaacaaaaTTTAATTTTCCTAATGGAAAAAATTATGGTGCATTCTATAACAATAGAGGACTCACAGAAAACTTTGCAGGTAGATATATCAATAGAGCAATGAAAACAAAGGTATGTAAGTAGTAAATAGAAACTTCAGAGTAAATAGGTAAGAATTCCACAAAACTCAATGTACTGAAGGTTCATTTTACTCTCTAAAGGAGGAAGAACAGTCGTCTTGATGGGTGTGTTTAAGGGGCAATGATTGTGATGGAGTCTCAAATATTTCCTGACAGATTTTCTGATGTGTAACAATTTTCCTGAAAATGCAAATGATTCAGATCTTTTCTTTATCTTTCATTGTTTATTAATATCATATAAACaccagcctgacaaaaatggtgaaaccccatctctactaaaaatacaaaaattggccgggcgtggtggcacgtgcctgtaatcccagctactcaggaggctgaggcaggagaatcccgtgaaccagggaggcagaagtttgcagtgagccgagatcgcgccattacactccagcctgggcgacagagtgagactctgtcCGCCCCGCGCCCCCCTCCCCCCACAAAAAATAAACAGCAGAACACCTTAACTATGAAGAGAATACAATATCATTCATTTGCTCTCTTTTTTTCTAGTATCATTTATCACACACACACACCCTCACACCTTTTGCTCAATAGGTAAACATCTCTTTCACTTCTGTATCACtttctttctttctttctttc-----------------------ttttttttttgagacggagtctcgccctttaagtgcagttgcgctgtctctgctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccgtgccgggctaattctttgtatttttagtagagactgagtttcacctgttagccaggatggtctcgatctcctgacctcgtgatccgccctcctcggcttcccaaagtgctaggattacaggcgtgagccaccgcgcccggccTCTGTACCATTTTCTCCACtttgaggcagagtctctctctgtcgcccaggctggagtgcagtggcgggatctcggctcactgcaagctccacctcccgggttcacgccattcgtctgcctcagcctccagagtagctgggactacaggtgcccgccaccacgcccggctaattttttt-gtatttttagtagagacgaggtttcacctcgttagccaggatggtctcgatctcctgacctagtgatccgcccgcctcggcctcccaaagtgctgggatgataggcgt
s panTro5.chr6             29916138 2476 + 175400573 actattatacatttttcacaaccagtgagacaatattaatacagtatcactaaactttatttcaatttcattagctctttctgttttgaaacaaagtcttgctctgtcacccaggccggagtgcaatggcatgatgtccactcactgcaacctccacctcccgagttcaaatgattttcatgcctcagcctcctgaatagctgtgactacagacacatgccaccatgcctggctgatttatgtatttttagtagagacaggatttcaccatgttggtcaggctggtctcttactcctgacctaaagtgatctacccgccttggcctcccaaagtgctaggattacaggtgtgagccaccatgcccagccaggtttcattagttcttttaacttcccttttctgtcacaggatttcatcgaggatatcacattgtatttagtcctaatcatgtctccttaaggctcctccaggttgACTTTGTTTTCAATGACtgtcttagtatgttgagtattactataacagaataacttgaaactgggtagtttataaagagaagatgtttatttagctcatgattttgcaggctgggaagttcaacaggatagtgctggatctggcaaacttctggtgaaggccaaatgttaggtcaaaacatggtggagaaggggaaaagtgagtggcatgtgcaaaaacatcacatggggagacagggaagcaagagagaatctaggaaaccaaacttgcttttataacaacctgctttttggtaactaacctagccccaacagagtaataaattactcgctcatgtgggagggcattaatctattcatgaaggatctgctcccgatgacccaaacgcctcccactaagccccacctccaacaccaccaccacattgagaac--tTTTTTTTTTTTGcctgaggttgggagtttgagaccagcctcaccaacatggataaaccctgtctctactaaaaatagaaaattagccaggtgtgatggcacatgcctgtaatcccagttattcaggaggctgaggcaggagaattgcttgaacccgggaggtggaagttgcagtgagccaagatcatgccattgcgctccagactgggcaacaagagtgaaactctgtctcaaagaaagaaaaaaaaaaagagtaaacaaaATTTAATTTTCCTAATGGAAAAAATTATGGTGCATTCTATAACAATAGAGGACTCACAGAAAACTTTGCAGGTAGATATATCAATAGAGCAATGAAAACAAAGGTATGTAAGTAGTAAATAGAAACTTCAGAGTAAATAGGTAAGAATTCCACAAAACTCAATGTACTGAAGGTTCATTTTACTCTCTAAAGGAGGAAGAATAGTCGTCTTGATGGGTGTGTTTAAGGGGCAATGATTGTGATGGAGTCTCAAATATTTCCTGACAGATTTTCTGATGTGTAACAATTTTCCTGAAAATGCAAATGATTCAGATCTTTTCTTTATCTTTCATTGTTTATTAATATCATATAAACaccagcctgaccaaaatggtgaaaccccatctctactaaaaatacaaaaattggccgggcgtggtggcacgtgcctgtaatcccagctactcaggaggctgaggcaggagaatcccttgaaccagggaggcagaagtttgcagtgagccgagatcgcgccattacactccagcctgggcgacagagtgagactctgtcCGCCCTGCGCCCCCCTCCCCCCACAAAAAATAAACAGCAGAACACCTTAACTATGAAGAGAATACAATATCATTCATTTGCTCTCTTTTTTTCTAGTATCATTTATCACACATACACACCCTCACACCTTTTGCTCAATAGGTAAACATCTCTTTCACTTCTGTATCACtttctttctttctttctttt-----------------------ttttttttttgagacggagtctcaccctttaagtgcagtggcgctgtctctgctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagccgcccgagtagctgggacaacaggcgcccaccaccgtgcctggctaattctttgtatttttagtagagactgagtttcacctgttagccaggatggtctcgatctcctgacctagtgatccgccctcctcggcttcccaaagtgctaggattacaggcgtgagccaccgcgcccggccTCTGTACCATTTTCTCCACtttgaggcagagtctctctctgtcacccaggctggagtgcagtggcgggatctcggctcactgcaagctccacctcccgggttcacgccattcgtctgcctcagcctccagagtagctgggactgcaggtgcccgccaccacgcccggctaattttttttgtatttttaatagagacgaggtttcaccgcgttagccaggatggtctcgatctcctgacctagtgatccgcccgcctcggtctcccaaagtgctgggatgataggcgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30149868 2465 + 173848474 actattatacatttttcacaaccagtgagacaatattaatacagtatcactaaactttatttcaatttcattagctctttctgttttgaaacaaagtcttgctctgtcacccaggccggagtgcaatggcatgatgtccactcactgcaacctccacctcccgagttcaaatgattttcatgcctcagcctcctgaatagctgtgactacagacacatgccaccatgcctggctgatttatgtatttttagtacagacaggatttcaccatgttggtcaggctggtctcttactcctgacctaaagtgatccacccgccttggcctcccaaagtgctaggattacaggtgtgagccaccatgcccagccaggtttcattagttcttttaacttcctttttctgtcacaggatttcatcgaggatatcacattgtatttagtcctaatcatgtctccttaaggctcctccaggttgACTTTGTTTTCAATGACtgtcttagtatgttgagtattactataacagaataacttgaaactgggtagtttataaagagaagatgtttatttagctcatgattttgcaggctgggaagttcaacaggatagtgctggatctggcaaacttctggtgaaggccaaatgttaggtcaaaacatggtggagaaggggaaaagtgagtggcatgtgcaaaaacatcacatggggagacagggaagcaagagagaatctaggaaaccaaacttgcttttataacaacctgctttttggtaactaacctagccccaacagagtaataaattactcgctcatgtgggagggcattaatctattcatgaaggatctgctcccgatgacccaaacgcctcccactaagccccacctccaacaccaccaccacattgagaac---tTTTTTTTTTTGcctgaggttgggagtttgagaccagcctcaccaacatggataaaccctgtctctactaaaaatagaaaattagccaggtgtgatggcacatgcctgtaatcccagttattcaggaggctgaggcaggagaattgcttaaacccgggaggtggaagttgcagtgagccaagatcatgccattgcactccagactgggcaacaagagtgaaactctgtctcaaagaaaga-aaaaaaaaagagtaaacaaaaTTTAATTTTCCTAATGGAAAAAATTATGGTGCATTCTATAACAATAGAGGACTCACAGAAAACTTTGCAGGTAGATATATCAATAGAGCAATGAAAACAAAGGTATGTAAGTAGTAAATAGAAACTTCAGAGTAAATAGGTAAGAATTCCACAAAACTCAATGTACTGAAGGTTCATTTTACTCTCTAAAGGAGGAAGAATAGTCGTCTTGATGGGTGTGTTTAAGGGGCAATGATTGTGATGGAGTCTCAAATATTTCCTGACAGATTTTCTGATGTGTAACAATTTTCCTGAAAATGCAAATGATTCAGATCTTTTCTTTATCTTTCATTGTTTATTAATATCATATAAACaccagcctgaccaaaatggtgaaaccccatctctactaaaaatacaaaaattggccgggcgtggtggcacgtgcctgtaatcccagctactcaggaggctgaggcaggagaatcccttgaaccagggaggcagaagtttgcagtgagccgagatcgcgccattacactccagcctgggcgacagagtgagactctgtcCGCCCTGCGCCCCCCT-CCCCCAC-AAAAATAAACAGCAGAACACCTTAACTATGAAGAGAATACAATATCATTCATTTGCTCTC-TTTTTTCTAGTATCATTTATCACACATACACACCCTCACACCTTTTGCTCAATAGGTAAACATCTCTTTCACTTCTGTATCACtttctttctttcttt----------------------------ttttttttttgagacggagtctcaccctttaagtgcagtggcgctgtctctgctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagccgcccgagtagctgggacaacaggcgcccaccaccatgcctggctaattctttgtatttttagtagagactgagtttcacctgttagccaggatggtctcgatctcctgacctagtgatccgccctcctcggcttcccaaagtgctaggattacaggcgtgagccaccgcgcccggccTCTGTACCATTTTCTCCACtttgaggcagagtctctctctgtcacccaggctggagtgcagtggcgggatctcggctcactgcaagctccacctcccgggttcacgccattcgtctgcctcagcctccagagtagctgggactgcaggtgcccgccaccacgcccggctaattttttt-gtatttttaatagagacgaggtttcaccgcgttagccaggatggtctcgatctcctgacctagtgatccgcccgcctcggcctcccaaagtgctgggatgataggcgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5949528 2494 +   6154872 actattatacatttttcacaaccagtgagacaatattaatacagtatcactaaactttatttcaatttcattagctctttctgttttgaaacaaagtcttgctctgtcacccaggctggagtgc-atggcatgatgtccactcactgcgacctccacctcccgagttcaaatgattttcatgcctcagcctcctgaatagctgtgactacagacacatgccaccgtgcctggctgatttccgtatttttagtagagacaggatttcaccatgttggtcaggctggtctcttactcctgacctaaagtgatccgcccgccttggcctcccaaagtgctaggattacaggtgtgagccaccatgcccagccaggtttcattagttcttttaacttcctttttctgtcacaggatttcatcgaggatatcacattgtatttagtcctaatcatgtctccttaaggctcctccaggttgACTTTGTTTTCAATGACtgtcttagtatgttgagtattactataacagaataacttgaaactgggtagtttataaagagaagatgtttatttagctcatgattttgcaggctgggaagttcaacaggatagtgctggatctggcaaacttctggtgaaggccaaatgttaggtcaaaacatggtggagaaggggaaaagtgagtggcatgtgcaaaaagatcacatggggagacagggaagcaagagagagtctaggaaaccaaacttgcttttataacaacctgctctttggtaactaacctagccccaacagagtaataaattactcgctcatgtgggagggcactaatctattcatgaaggatctgctcccaatgacccaaacacctcccactaagccccacctccaacaccaccaccacattgagaactTTTTTTTTTTTTTGcctgaggttgggagtttgagaccagcctcaccaacatggataaaccctgtctctactaaaaatagaaaattagccaggtgtgatggcacatgcctgtaatcccagttattcaggaggctgaggcaggagaattgcttgaacccgggaggtggaagttgcagtgagccaagatcatgccattgcactccagcctgggcaacaagagtgaaactctgtctcaaagaaga--aaaaaaaaagagtaaacaaaaTTTAATTTTCCTAATGGAAAAAATTATGGTGCATTCTATAACAATAGAGGACTCACAGAAAACTTTGCAGATAGATATATCAATAGAGCAATGAAAACAAAGGTATGTAAGTAGTAAATAGAAACTTCAGAGTAAATAGGTAAGAATTCCACAAAACTCAATGTACTGAAGGTTCATTTTACTCTCTAAAGGAGGAAGAACAGTCGTCTTGATGGGTATGTTTAAGGGGCAATGATTGTGATGGAGTCTCAAATATTTCCTGACAGATTTTCTGATGTGTAACAATTTTCCTGAAAATGCAAATGATTCAGATCTTTTCTTTATCTTTCATTGTTTATTAATATCATATAAACaccagcctgaccaaaatggtgaaaccccatctctactaaaaatacaaaaattggccgggcgtggtggcacgtgtctgtaatcccagctactcaggaggctggggcaggagaatcccttgaaccagggaggcagaagtttgcagtgagccgagatggcgccattacactccagcctgggcgacagagtgagactctgtcCGCCCCGCGCCCCCCTTCCCCCACAAAAAATAAACAGCAGAACACCTTAACTTTGAAGAGAATACAATATCATTCATTTGCTCTCTTTTTTTCTAGTATCATTTATCAC----ACACACCCTCACACCTTTTGCTCAATAGGTAAACATCTCTTTCACTTCTGTATCActttctttctttctttctttctttctttctttctttctttctttctttttttttgagacggagtctcgctctttaagtgcagtggtgctgtctctgctcactgtaagctccgcctcccgggttcacgccattctcctgcctcagccgcccgagtagctgggactacagacgcccgccaccgtgcctggctaattctttgtatttttagtagagacggagtttcgcctgttagccaggatggtctcgatctcctgacctcgtgatccgccctcctcggcttcccaaagtgctaggattacaggcgtgagccaccgcgcccggccTCTGTACCATTTTCTCCACtttgaggcagagtttctctctgtcgcccaggttggagtgcagtggcgggatctcggctcactgcaagctccacctccagggttcacgccattcgtctgcctcagcctccagagtagctgggactacaggtgcccgccaacacgcccggctaattttttttgtatttttagtagagacgaggtttcaccgcgttagccaggatggtctcgatctcctgacctagtgatccgcccgcctcggcctcccaaagtgctgggatgataggcgt
i gorGor5.CYUI01015250v1   C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     372263  164 -    457564 I
e cebCap1.NW_016107755v1     299447  150 -   1771730 I
e calJac3.chrUn_GL286223      78964  139 +    132061 I
e colAng1.NW_012115566v1    2703782 9005 -   3067355 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I
e nomLeu3.chr1a            74667414  766 + 122973662 I

a score=15706.000000
s hg38.chr6_GL000254v2_alt   955828 18 +   4827813 gagccaccgcgcccggcc
s panTro5.chr6             29918614 18 + 175400573 gagccaccgcgcccggGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30152333 18 + 173848474 gagccaccgcgcccggGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5952022 18 +   6154872 gagccaccgtgcccggAC
i gorGor5.CYUI01015250v1   C 0 C 0
s colAng1.NW_012115566v1    2712787 18 -   3067355 GAGCCACCGCGCCCGGCC
i colAng1.NW_012115566v1   I 9005 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     372263 164 -    457564 I
e cebCap1.NW_016107755v1     299447 150 -   1771730 I
e calJac3.chrUn_GL286223      78964 139 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=1156092.000000
s hg38.chr6_GL000254v2_alt   955846 564 +   4827813 tttttaagacagagtttcgctcttgttgcccaggctggagtgcaatggcccgatcttggcccaccacaacctctgcctcctgggttcaagtcaagcgattctcctgcctcagccttccgagtagctgggattacaggcatgcaccaccacgcctgcctaa-tttgtattttcagtagagagggggtttctccatgttggtcaggctggtctcaaactcccaacctcaggtgatccgccggccttggcctcccaatttcctgggattacaggcgtgagccaccgcacccagccTGGTTTAATACTTTTTATTTAGTGGCACAATGCCCAGGAATGAATTAAAGTCATTAAATgaggactaggttgctatgcacttggctgtttctggacttcctgtgctgttccattggttggtctattcattcaccagtgccacactgttctagtgacagggaatttgtaaaatatttaactattaggcataactagacacccaattctcaatttgtttttt----tcccccaagggattttctaattattcttat-------------ttattttct-------------------------catgtgaactttat
s panTro5.chr6             29918632 564 + 175400573 tttttaagacagagtttcgctgttgttgcccaggctggagtgctatggcccgatcttggcccaccacaacctctgcctcctgggttcaagtcaagcgattctcctgcctccgccttccgagtagctgggattacaggcatgcaccaccacgcctgcctaa-tttgtattttcagtagagagggggtttctccatgttggtcaggctggtctcaaactcccaacctcaggtgatccgccggccttggcctcccaatttcctgggattacaggcgtgagccaccgcacccagccTGGTTTAATACTTTTTATTTAGTGGCACGATGCCCAGGAATGAATTAAAGTCATTAAATGAGGACTAGGTTGCTATGCACTTGGctgtttctggacttcctgtgctgttccattggttggtctattcattcaccagtgccacactgttctagtgacagggaatttgtaaaatatttaactattaggcataactagacacccaattctcaatttgtttttt----tcccccaagggattttctaattattcttat-------------ttattttct-------------------------catgtgaactttat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30152351 564 + 173848474 tttttaagacagagtttcgctgttgttgcccaggctggagtgctatggcccgatcttggcccaccacaacctctgcctcctgggttcaagtcaagcgattctcctgcctccgccttccgagtagctgggattacaggcatgcaccaccacgcctgcctaa-tttgtattttcagtagagagggggtttctccatgttggtcaggctggtctcaaactcccaacctcaggtgatccgccggccttggcctcccaatttcctgggattacaggcgtgagccaccgcacccagccTGGTTTAATACTTTTTATTTAGTGGCACGATGCCCAGGAATGAATTAAAGTCATTAAATgaggactaggttgctatgcacttggctgtttctggacttcctgtgctgttccattggttggtctattcattcaccagtgccacactgttctagtgacagggaatttgtaaaatatttaactattaggcataactagacacccaattctcaatttgtttttt----tcccccaagggattttctaattattcttat-------------ttattttct-------------------------catgtgaactttat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5952040 563 +   6154872 tttttaagacagagtttcgctgttgttgcccaagctggagtgcgatggcccgatcttggcccaccacaacctctgcctcctgggttcaagtcaagcgattctcctgcctcagccttccgagtagctgggattaaaggcatgcaccaccacgcctgcctaa-tttgtattttcagtagagagggggtttctccatgttggtcaggctggtctcaaactcccaacctcaggtgatctgccggccttggcctcccaatttcctgggattacaggcgtgagccaccgcacccagccTGGTTTAATACTTTTTATTTAGTGGCACGATGTCCAGGAATGAATTAAAGTCATTAAATgaggactaggttgctatgcacttggctgtttctggacttcctgtgcggttccattggttggtctattcattcaccagtgccacattgttctagtgacagggaatttgtaaaatatttaactattaggcataactagacacccaattctcaattta-ttttt----tcccccaagggattttctaattattcttat-------------ttattttgt-------------------------catgcgaactttat
i gorGor5.CYUI01015250v1   C 0 C 0
s colAng1.NW_012115566v1    2712805 551 -   3067355 tttttaagacggagtttcacggttgttgcccaggctggagttcaatggcgcgatcttggctcaccgcaacctctgcctcctgagttcaagtcaagcgattcacctgcctcagccttcggagtagctgggattaaaggcatgcaccaccatgcctgcctaa-tttgtatttttagtagagacggggtttctccgtgttgctcaggctggtctcaaactcccaacctcaactgatcctcgagcc-------------ttcctgggattacaggcgtaagccactgcacccggccTGGTTTAAAACTTTTTATTTAGTGGCAGGATGTCCAGGAATGAATTAAAGTCATTAAATGAGGACTCGGTTGCTCTGCACTTGGctctttctggactttctgtgctgttccattggtttgtctattcattcaccagtgccacactgttctagtgacagggaatctgtaaaatatttaactattaggcataactagacacccaattctcaatttgtttttt----tcccccaagggattttctaattattcttat-------------ttatttttc-------------------------tatgtgaactttat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      79103 590 +    132061 ttttggagatggagtttcgctcttgttgcctagactggagtgcaatggcacgatcttggctca-tgcaacctctgcctccttggtttaagt-----gattcttctacctcagcatcctgagtagctaggattacaggcatgcaccaccacgctcagctaattttgtatttttagta-agatggaggttctctgtgttggtccagctggtctggaactcccatcctcaagtgatcttcttgcctcaatctcccaaagttctgggattacaggcgtgagcc-ctgagcccggccTTGTTTAATACTTTTTATTTAGTGGCAGGATGTCCAGGAATGAATTAAAGTCATTAAA-------TGGCTTGCTATGCACTTGGctctttctggactttctgtgctgttccatcagtttgtctattcatgct-cagtgccacactgttctagtgacagggaatttgtgaaatgtttaaatatttggcatggctagacatccaaTCCTCAATTTGTCCCCCGACTCCTGCCCCGGGATTTTCTAATT-TTCTTATGTGAACTTTATTATTATTTTTTTCTTTCTACATTGGCTCAGAAACAACATGTGAACTTTGT
i calJac3.chrUn_GL286223   I 139 C 0
s cebCap1.NW_016107755v1     299597 557 -   1771730 tttttgagatggagttttgctcttgttgcctagactggagtacaatggcacgatcttggctca-tgcaacttctgcctccttggttcaagt-----gattcttctacctcagcatcccgagtagctgggattgcaggcatgcgccaccacgctcggctaattttgtatttttagtagagatggaggttctccttgttggtcagcctggtctgcaactcccgacctcaggtgatctgctagcctcagtctcccaaagtgctgggattacaggcataagccactggacctggccTTGTTTAATACTTTTTATTTAGTGGCAGGATGTCCAGGAATGAATTAAAGTCATTAAATGAGGACTGGGTTGCTATGCACTTGGctctttctggactttctgcactgttccattggtttatctattcatgca-cagtgccaccctgttctagtgacagggaatttgtaaaatgtttaaatatttggggtgactagacacccaatcctcaatttatttccc----cctctccagggattttttaatt-ttcttat-------------ttattttct-------------------------catgtgaagtttat
i cebCap1.NW_016107755v1   I 150 C 0
s aotNan1.NW_018509740v1     372427 561 -    457564 tttttgagatggagtttcactcttgttgtctaggctggagtgcaatggcacgatcttggctca-tgcaacctccgcctccttggttcaagt-----gattcttctacctcagcatcccgagtagctgggattacaggcgtgcaccaccacgcttggctaattttgtatttttagtagagatggaggttctctgtgttggtctggctggtctggaactcccgacctcaggtgatctgctcgcctcagtctcccaaagtgttgggattacaggcataagccactgagcccggccTTGTTTAATACTTTTTATTTAGTGGCAGGATATCCAGGAATGAATTAAAGTCATTAAATGAGGACTGGCTTGCtatgcacatggttctttctggactttctgtgctgttccatcggtttgtctattcatgca-cagtgccgcactgttctagtgacagggaatttataaaatgtttaaatatttggcatggctagacatccaaTCCTCAATTTGTCCCTCCCTTCTTGCCCCGGGattttctaatt-ttcttat-------------ttattttct-------------------------catgtgaactttat
i aotNan1.NW_018509740v1   I 164 I 403
e saiBol1.JH378388            37897 5473 -    110772 M
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=91813.000000
s hg38.chr6_GL000254v2_alt   956410 53 +   4827813 aatctacttgtctagcttgagaaaaaaagtagttgttggcattttgattagga
s panTro5.chr6             29919196 53 + 175400573 aatctacttgtctagcttgagaaaaaaagtagttgttggcattttgattagga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30152915 53 + 173848474 aatctacttgtctagcttgagaaaaaaagtagttgttggcattttgattagga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5952603 53 +   6154872 aatctacttgtctagcttgagaaaaaaagtagttgttggcattttgattagga
i gorGor5.CYUI01015250v1   C 0 C 0
s colAng1.NW_012115566v1    2713356 53 -   3067355 aatctacttgtctagcttgagaaaaaaagtagttgttggcattttgattagga
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      79693 53 +    132061 AATCTACTTGTCTAGTTTGAGAAAAAAAGAAGTTGTTGGCATTTTGATTAGGA
i calJac3.chrUn_GL286223   C 0 C 0
s cebCap1.NW_016107755v1     300154 52 -   1771730 aatctacttgttaagtttcag-aggaaagttgttgttagcattttgattagga
i cebCap1.NW_016107755v1   C 0 I 10140
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     372988 403 -    457564 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=-1300.000000
s hg38.chr6_GL000254v2_alt   956463 1 +   4827813 -g
s panTro5.chr6             29919249 1 + 175400573 -g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30152968 1 + 173848474 -g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5952656 1 +   6154872 -g
i gorGor5.CYUI01015250v1   C 0 C 0
s colAng1.NW_012115566v1    2713409 1 -   3067355 -g
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      79746 1 +    132061 T-
i calJac3.chrUn_GL286223   C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     372988 403 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=18831.000000
s hg38.chr6_GL000254v2_alt   956464 11 +   4827813 gtattacattt
s panTro5.chr6             29919250 11 + 175400573 gtattacattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30152969 11 + 173848474 gtattacattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5952657 11 +   6154872 gtattacattt
i gorGor5.CYUI01015250v1   C 0 C 0
s colAng1.NW_012115566v1    2713410 11 -   3067355 gtattacattT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      79747 11 +    132061 GAATTACtttt
i calJac3.chrUn_GL286223   C 0 I 302
s aotNan1.NW_018509740v1     373391 11 -    457564 GTATTACATTT
i aotNan1.NW_018509740v1   I 403 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=-2156.000000
s hg38.chr6_GL000254v2_alt   956475 1 +   4827813 -g
s panTro5.chr6             29919261 1 + 175400573 -g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30152980 1 + 173848474 -g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5952668 1 +   6154872 -g
i gorGor5.CYUI01015250v1   C 0 C 0
s colAng1.NW_012115566v1    2713421 1 -   3067355 -T
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     373402 1 -    457564 T-
i aotNan1.NW_018509740v1   C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      79758 302 +    132061 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=676587.000000
s hg38.chr6_GL000254v2_alt   956476 399 +   4827813 aaaattTACTCTGCAAATGTGCTGTATAGTCTTCCTATTTGAGAATGTTCTTCTGtactacacagccataaaaaggaatgaattaacagcattttcagtgacctggatgagattggagactgttattctaagtgaaataactcaggaatgggaaaccaaacattgtatgttctcactgatatgtagaagctgagttatgaagacacaaaggcatatgaatgatgcaatggactttggggacttgagaggaagaataggagggggcaagggacagaagactacaa----ggtgcagtgtatactgctcgggtgataagtgcatcgaaatctcacaaatcaccactaaagaacttactcgtgtaaccgaataccacctgtaccccaagaacttatggaaaagaaa-
s panTro5.chr6             29919262 399 + 175400573 aaaatttactctgcaaatgtgctgtatagtcttcctatttgagaatgttcttctgtactacacagccataaaaaggaatgaattaacagcattttcagtgacctggatgagattggagactgttattctaaatgaaataactcaggaatgggaaaccaaacatcgtatgttctcactgatatgtagaagctgagttatgaagacacaaaggcatatgaatgatgcaatggactttggggacttgggaggaagagtaggagggggcaagggacagaagactacaa----ggtgcagtgtatactgctcaggtgataagtgcatcgaaatctcacaaatcaccactaaagaacttactcgtgtaaccgaataccacctgtaccccaagaacttatggaaaagaaa-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30152981 399 + 173848474 aaaatttactctgcaaatgtgctgtatagtcttcctatttgagaatgttcttctgtactacacagccataaaaaggaatgaattaacagcattttcagtgacctggatgagattggagactgttattctaaatgaaataactcaggaatgggaaaccaaacatcgtatgttctcactgatatgtagaagctgagttatgaagacacaaaggcatatgaatgatgcaatggactttggggacttgggaggaagagtaggagggggcaagggacagaagactacaa----ggtgcagtgtatactgctcaggtgataagtgcatcgaaatctcacaaatcaccactaaagaacttactcgtgtaaccgaataccacctgtaccccaagaacttatggaaaagaaa-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5952669 399 +   6154872 aaaatttgctctGCAAATGTGCTGTATAGTCTTCCTATTTGAGAATGTTCTTCTGtactacacagccgtaaaaaggaatgaattaacagcattttcagtgacctggatgagattggagactgttattccaagtgaaataactcaggaatgggaaaccaaacatcgtatgttctcactgatatgtagaagctgagttatgaagacacaaaggcatatgaatgatgcaatggactttggggacttgggaggaagggtaggagagggcaagggacagaagactacaa----ggtgcagtgtatactgttcgggtgataagtgcatcgaaatctcacaaatcaccactaaagaacttactcgtgtaaccaaataccacctgtacccccagaacttatggaaaagaaa-
i gorGor5.CYUI01015250v1   C 0 C 0
s colAng1.NW_012115566v1    2713422 396 -   3067355 AAAATTTACTCTGCAAATGTGCTGTATAGTC-------TTGAGAATGTTCTTCTGtactacacaaccataaaaaggaatgaattaacagcatttgcagttacctggttgagattggagactgttattctaagtgaaataactcaggaatggaaaaccaaacatggtatgttctcactgatatgtagaagctgagttatgaagacacaaaggcacatgaatgatgcaatggactttggggacttgggaggaagagtaggaggcggcaagggacagaagattacaaatatggtgcagtgtatactacttaggtgataagtgctccgaaatctcacaaatcaccactaaagaacttactcatgtaaccgaataccacctgtaccccaacaacttatggaaaaaaaa-
i colAng1.NW_012115566v1   C 0 I 6512
s calJac3.chrUn_GL286223      80060 403 +    132061 AAAATTTACTCTGCAAGACAACTGTATAGTCTTTCTATTTGAGAATGTTGTTCTGtactaccaagccataaaaaggaatgaattaacagcatttgcagtgacctggatgagattggagtctattattctaagtgaagtaactcaggaatggaaaaccaaataccatatgttctcactgatatgtatgagctaagctatgaggacgcaaaggcataagaatgatgcaatggactttgggggcctggagggaagaatgggagggggcaaggaccaaaagactaaaa-tatggtgtaatgtgtactgctcgggtcatgagtgcaccgaaatctcacagatcaccactgaagaacttactcatgtaactgaataccacctgtcccccaataacttatggaaaataaaa
i calJac3.chrUn_GL286223   I 302 C 0
s aotNan1.NW_018509740v1     373403 403 -    457564 AAAATTTACTCTGCAAGACAACTGTATAGTCTTTCTATTCGAGAATGTTGTTCTGtaccaccaagccataaaaaggaatgaattaacagcatttgcagtgacctggatgagattggagtctgttattctaagtgaaataactcaggaatggaaaaccaaatattgtgtgttctcaccgatatgtatgagctaagctatgaggacgcaaaggcataagaatgatgcaatggactttggaggcttggggggaagagtgggagggggcaaggaacaaaagactaaaa-tatggtgtaatgtgtactgcttgggtgatgggtgcaccgaaatctcacaaatcaccactgaagaacttactcatgtaaccgaatgccacctgtcccccaataacttatggaaaattaaa
i aotNan1.NW_018509740v1   C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=5507.000000
s hg38.chr6_GL000254v2_alt   956875 27 +   4827813 -aaaAAAAGTTCTTCAtttttttttttt-
s panTro5.chr6             29919661 14 + 175400573 -aaaAAA-Gttcttc------------c-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30153380 13 + 173848474 -aaaAAA-Gttcttc--------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5953068 25 +   6154872 -aaaAAA-Gttcttc-cttttttttttt-
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chrUn_GL286223      80463 14 +    132061 aaaGAAA-tttcttt--------------
i calJac3.chrUn_GL286223   C 0 C 0
s aotNan1.NW_018509740v1     373806 27 -    457564 aaaaGAA-Gttcttc-tttattttttttt
i aotNan1.NW_018509740v1   C 0 I 8539
e saiBol1.JH378388            37897 5473 -    110772 M
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e colAng1.NW_012115566v1    2713818 6512 -   3067355 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=248756.000000
s hg38.chr6_GL000254v2_alt   956902 315 +   4827813 tttttttttttgaaatggactctcattctgtcacccaggctggagtgcagtggtgtgacctcggctcaccacaacctccacttcccaggttcaagccattctcctgcctcagcctcccaggtagttgggattataggctcacaccaccacacccggctaatttttgtatttttagtagaagcagggtttcaccac-ttggccaggctggtctcaaactcctgatctcaggtgatcctccaacctcagcctgccaaagtgctgagattacaggcgtgagacaccgcacccggccCGATTTGTTCATATCTAATTTTT
s panTro5.chr6             29919675 315 + 175400573 tttttttttttgaagtggactctcattctgtcacccaggctggagtgcagtggtgtgacctcagctcaccacaacctccacctcccaggttcaagtcattctcctgcctcagcctcccaggtagttgggattataggttcacatcaccacacccggctaatttttgtatttttagtagaagcggggtttcaccac-ttggccaggctggtctcaaactcctgatctcaggtgatcctccaacctcagcctgccaaagtgctgagattacagacgtgagacaccgcacccggcccgatttgttcatatctaattttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30153393 315 + 173848474 cttttttttttgaaatggactctcattctgtcacccaggctggagtgcagtggtgtgacctcagctcaccacaacctccacctcccaggttcaagtcattctcctgcctcagcctcccaggtagttgggattataggctcacatcaccacacccggctaatttttgtatttttagtagaagcggggtttcaccac-ttggccaggctggtctcaaactcctgatctcaggtgatcctccaacctcagcctgccaaagtgctgagattacagacgtgagacaccgcacccggcccgatttgttcatatctaattttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5953093 316 +   6154872 tttttttttttgaaatggactctcattctgtcacccaggctggagtgcagtggtgtgacctcggctcaccacaacctccacctcccaggttcaagccattctcccgcctcagcctcccaggtagttgggattataggctcacaccaccacacccggctaatttttgtatttttagtagaagcggggtttcaccacgttggccaggctggtctcaaactcctgatctcaggtgatcctcccacctcagcctgccaaagtgctgagattacaggcgtgagacaccgcacccggccCGATTTGTTCATATCTAATTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chrUn_GL286223      80477 316 +    132061 tttttttttttgagacggagcctcagtctgtcccctaggctgaagtgcagtggtgtgatctctgctcactgcaaaatccacctcccaagttcaagccattctcctgccaccgcctcctgaatagctgatattacaagcatgtgctaccatacccggctaatttttgtatttttattagagacaagatttcaccaagccggccaggctggtctcgaactcctgacctcgggtaatctgcctgcctcagcctcccaaaatgctggaattacagttatgagtcaccttgcccagccTAGTCCTTTCAAATTTCACTttt
i calJac3.chrUn_GL286223   C 0 I 12582
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e colAng1.NW_012115566v1    2713818 6512 -   3067355 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=174399.000000
s hg38.chr6_GL000254v2_alt   957217 337 +   4827813 AAATTTCAGATGTGTTTTAATGTTTTCATTTAAAGTTTGCACACTTCTTAGTAATTTTTT-CATTAAAAACCTTTTTGTTTCTATTATATATGAGGTTATCGCCTCACAAAAATTTTAACTTTTTATTGTTTATATGAACAAAGGCAATTGTTTAATGTTT-GGGAATTTATATGCTACTATATGCTATTTCTTTTCTtttcttttcctttacttttttgttttttttgagaggg-aatttcactcttgtcgcccaggctggagtgcaatggcgcgatctgggctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagcctcccaag
s panTro5.chr6             29919990 338 + 175400573 aaatttcagaagtgttttaatgttttcatttacagtttgcacacttcttagtaatttttttcattaaaaacctttttgtttctattatatatgaggttattgcctcacaaaaattttaactttttattgtttatatgaacaaaggcaattgtttAATGTTT-GGGAATTTATATGCTACTATATGCTATTTCTTTTCTtttcttttcctttacttttttgttttttttgagaggg-aatttcactcttgtcgcccaggctggagtgcaatggcgcgatctgggctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagcctcccaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30153708 335 + 173848474 aaatttcagaagtgttttaatgttttcatttacagtttgcacacttcttagtaatttttt-cattaaaaacctttttgtttctattatatatgaggttattgcctcacaaaaattttaactttttattgtttatatgaacaaaggcaattgtttaatgtttggggaatttatatGCTACTATATGCTATT--CTtttctttcttttcctt--actttttgttttttttgagagggaaatttcactcttgtcgcccaggctggagtgcaatggcgcgatctgggctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagcctcccaag
i panPan2.chr6             C 0 M 606
s gorGor5.CYUI01015250v1    5953409 337 +   6154872 AAATTTCAGATGTGTTTTAATGTTTTCATTTAAAGTTTGCACACTTCTTAGTAATTTTTTTCATTAAAAACCTTTTTGTTTCTATTCTATATGAGGTTATCGCCTCACAAACTTTTTAACTTTTTATTGTTTATATGAACAAAGGCAATTGTTTAATGTTT-GGGAATTTATATGCTACTATATGCTATTTCTTTTCttttcttttccttt-attttttgttttttttgagaggg-aatttcactcttgtcgctcaggctggagtgcaatggcgcgatctgggctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagcctcccaag
i gorGor5.CYUI01015250v1   C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      80793 12582 +    132061 I
e colAng1.NW_012115566v1    2713818 6512 -   3067355 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=235467.000000
s hg38.chr6_GL000254v2_alt   957554 880 +   4827813 tagctgggatttataggcacgcaccaccatacccggctaattttgtatttttaatagaggcaggttttcaccacgttggccaggctggtcttgaattcctgatctcaggtgatctgcctgtctcagcctcccaaagcgctgggattagtcgtgagccacctcgcccggccTAGTCCCTTCTTTCAAATTTCATCACCACTCTTTGCTTGTTTTTCTttttt-----tcttttcttttctttttttttttttgagacagaatctcgctctgtcagccaggctggagtgcagtggcacgatctcggctcactgcaagctccgcctcccaggttgaagcgattctcctgcctcagcctcctgagcagctgggactacaggtgcgtgccaccatgcccagctaatttttgtatttttaatagaggtggagtttctccatactggccaggctggtctctaactcctgatctcgtgatccgcccacctcagcctcccaaagagctaggattacaggtgtgagtcaccgcgcccggccGCAAtttttttttttttttttttttttttttttttttgagaaggagtctggctcttgttgcccaggctagagtgcaatggcgccatATtgtagcaggacgagccgcagacaaaactcctcagacaccgagttaaagaaggaatgggtttattcggccgggggcatcggcaagactcctgtgtcaggagccgagctcccccagtgagcaatttctgtcccttttaagggatcacaactctaagggggtgcgcttgagagggccgtgatcgattgagcaagcaggggttatgtgactaggggctgcatgtcccagtaattagatcggaacaaacaggatagggattttcacagtgc
s panTro5.chr6             29920328 865 + 175400573 tagctgggatttataggcacgcaccaccatacccggctaattttgtatttttaatagaggcaggttttcaccacgttggacaggctggtcttgaattcctgatctcaggtgatcttcctgcctcagcctcccaaagcgctgggattagtcgtgagccacctcgcccggccTAGTCCCTTCTTTCAAATTTCATCACCACTCTTTGCTTGTTtttctttttt-----tcttttctttt-----tttttttttgagacagaatctcgctctgtcagccaggctggagtgcagtggcacgatctcggctcactgcaagctccgcctcccaggttgaagcgattctcctgcctcagcctcctgagcagctgggactacaggtgcgtgccaccatgcccagctaatttttgtatttttaatagaggtggagtttctccatactggccaggctggtctctaactcctgatctcgtgatccgcccacctcagccttccaaagagctaggattacaggcgtgagtcaccgcgcccggccGCAAtttttttttttttttttttttttttttttt----agaaggagtctggctcttgttgcccaggctagagtgcaatggcgccatATtgtagcaggacgagccgcagacaaaactcctcagacaccgagttaaagaaggaatgggtttattcggccgagggcatcggccagactcctgtctcaggagccgagctcccccagtgagcaatttctgtcccttttaagggatcacaactctaagggggtgcgcttgagagggtcgtgatcgattgagcaagcaggggttatgtgactaggggctgcatgt------aattagatcggaacaaacaggatagggattttcacagtgc
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5953746 878 +   6154872 tagctgggatttataggcacgcaccaccatacccggctaattttgtatttttagtagaggcaggttttcaccacgttggccaggctggtcttgaattcctgatctcaggtgatctgcctgcctcagcctcccaaagcgctgggattagtcgtgagccacctcgcccggccTAGTCCCTTCTTTCAAATTTCATCACCACTCTTTGCTTGGttttcttttttctttccttttttttttttttttttttttttgagacagaatctcgctctgtcagccaggctggagtgcagtggcacgatctcggctcactgcaagctccgcctcccaggttgaagcgattctcctgcctcagtctcctgagcagctgggactacaggtgcgtgccaccatgcccagctaatttttctatttttaatagaggtggagtttctccatactggccaggctggtctctaactcctgatctcgtgatccgcccacctcagcctcccaaagagctaggattacaggcgtgagtcaccgcgcccggccGCAAttttttttttttttttttttttttttg-------agaaggagtctggctcttgttgcccaggctagagtgcaatggcgccatATtgtagcaggacgagccgcagacaaaactcctcagacaccgagttaaagaaggaatgggtttattcggccgggggcatcggcaagactcctgtctcgggagccgagctcccctagtgagcaatttctgtcccttttaagggctcacaactctaagggggtgcgcttgagagggtcgtgatcgattgagcaagcaggaggtatgtgactaggggctgcatgccccagtaattagatcggaacaaacaggatagtgattttcacagtgc
i gorGor5.CYUI01015250v1   C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      80793 12582 +    132061 I
e colAng1.NW_012115566v1    2713818 6512 -   3067355 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I
e nomLeu3.chr1a            74667414 766 + 122973662 I
e panPan2.chr6             30154043 606 + 173848474 M

a score=1937313.000000
s hg38.chr6_GL000254v2_alt   958434 3521 +   4827813 ------------------ttttttttttttttttttttttt--gagacggagtctcgctccgttgtccaggctggcgtgcagtggcgcgatctcggctcactgcaagctccacctcccgggttctcgccattctccttcctgcctcagcttcgggagtagctgggactacaggcgcctgcaaccacgcccggctaattttttgtatttttagtagagacggggtttcactgtgttacccaggacagtatcgatctcctgacctcgtgatccacccaccttagcctcccaaagtactgggattacaggcgtgacccaccgtgcccggcctgaaaaatccactgttagactgatggaatttcctatataggtttttaggacactttttctcttctcttgctcattttaagattttttttcctttacattgagtttagattgtctgatgactatttgtcttggtgaagtccatcttgcaatgtattttccaggagttctctaagtatcttctatctggattttaaatctgtagccagggttagggaagttttcctcaattatttcctcaagtagattttccacactttttacccttcattctcccttaggaatacctatgattcatgggtacagatgttttacataaccccatacttcctgaaggctttgttcatattttaattctcttttctttctttttgtctgactgggttaatttgaaagacctgtcttcaagctctgaaattctttcttctgcttggtctagtctattgttaaagctttcagctgcatttggaactactttgatgaattttttatttccaggtggtttaattttttttttttttttcttttgagaaggagtctcgctctgtcgcccaggctggagtgcagtggcgcaatctcggctcactgcaagctccgcctcccgggttcagaccattctcctgcctcagcctcctgagtagctgggactacaggcgcctgcaaccaggcccggctaattttttgtattttgagtagagacgaggtttcactgtgttagccaggatggtctagatctcctgacctcgtgatctgcccgcctcagcctcccaaaatgctgggattacaggcatgagccaccgcgcccagcccaggtggtttacttttttaaaaatatttatctcttggtaaattttttattcatatgctgaattgattttttacatttctttgtgttgttttcaactttctcttggatttcattgagcttctttataatcattattttgaattatttatttggtatttcaaagattttatttttgttaggatctattgctagaaagttagtgtaatgttttggggatgtcataacactct--tttttcagagtatgttttcaaaacattctactgttttcaacagagaaacaaaggacttacttaaaaaatagaaaacatagagagttccagaatcatttctttggttccttctcatctgtagaaactttctcttcttatttttgaatttatttcatttgggcaggatttttttttccctttactatgtgactataatgtatgttgtttaaggtcctttgcatttggttgtgaatgctttcagtggcaaagactctgtagttgtcccctggttatagatagcctttgtatggtggctttctcaaatgccagttgtggtggtgatgtactgggagtgtgaacaggctcacagcctcctgcagggccaggatggcagaggtttaagaagtttatctcatttcctcttttggaagagatgagaagtttatttccactcatgtgcccttttgtcaactgatttgtattgaggtgcgtggttcagcctccagaacagtaggtgggcttatgcctaaaagcctatgtggcagaagcacgtgagtatatgcttcatcattgtatacctagaaaagttctctgttgcctcaggaaatgtgctggtaagtggaatgtacagcagcctgggctccctgctcagcaccagagagggggacatagctgagtagagctggatccccaagcctgccccacaatggtgagcacaggcagcagctttcaggcaggagtgatggcatgggaaacttctggtgaaacgtgcctaggtctccacagatgaggagagggctgccccagcttcatgacctggccaggcaggaatgccatccatttccctgtcattccctagtcctggcatcggggaaactcaaattgaccagacactactctctatctccaactgcaatgtagttgagactcattaaagatgtcttctcctcagctcaccatttaaatgtctttggtgcagagcatcctccctcaaccccaaacacatagcttttctttttcttttttttttt------gagatggagttttgctcttgttgcccaggctggagtgcaatggcgtgatctcagctcaccgcaacctccacctcccaggttcaagcaattctcctgcctcagcctctcgagtacctgggattacaggcatgcgccaccacgcctggctaattgtttttgtagttttagtagagacagggtttctccatgttggtcaggctggtctcgaactcctgacctcagatgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcctggcctgcacatagcttttcagctttcctgctctccactgcaggaatgctagcactccctgtagagaggggaaagggccctgtctttcacacaagcctggcccaaatggccacactgccagtggaaacacagtcacccctgatagccctagaaaggctcttctctggcacac--gtgccaatttcccatgggagtggccatgctgtgtttgaagcagtggtggatgggggaagggcaggagaatttcccctttccatgcctgattctaagcactggggctgcttggctgctgggatggaactacactccttcagcgcagagctgaacacagtgtccacgactctgctggaagtggtgcagtcactcagcccacaaacaaggagctcttggacacagatgagtacatggtctggcctcctttgtcccaactggtactttttttgtgtactgcagtctccctttccttaggagcagcaatccctgatggctagaccactgggaaccctgcagctccactgggtccagccagccctgtgtggctgccacaatccaagtgggcactgggggcatggctgcaggagcttctgtgatgtgaatatacaaaggttggggttccctgggaaggacacagtcccctgatggctacactcctaatatggcaccctgccaacactgcccgagtctggaggagggacaagtgacccagcgcaagttggttgtctggtgtgatgccctccagaagttcccaaatcgccatgcacatcagtgtttggctttgtgagggcagaggagctctccgacagttcagatactggtggtcttccttagggacgacgggagtcaaaacactcctatcttacctttcaatgaaataccaagtctctcaagg
s panTro5.chr6             29921193 3527 + 175400573 ------------------tttttttttttttttttttttttttgagacggagtctcgctccgtcgtccaggctggcgtgcagtggcgcgatctcggctcactgcaagctccgcctcccgggttctggccattctccttcctgcctcaccttcgcgagtagctgggactacaggtgcctgcaaccacgcccggctagttttttgtatttttagtagagatggggtttcacagtgttacccaggacagtatcgatctcctgacctcgtgatccacccaccttagcctcccaaagtactgggattacaggcgtgacccaccgtgcccggcctgaaaaatccactgttagactgatggaatttcctatataggtttttaggacactttttctcttctcttgctcattttaagattttttttcctttacattgagtttagattgtctgatgactatttgtcttggtgaagtccatcttgcaatgtattttccaggagttctttaagtatcttctatctggattttaaatctctagccagggttagggaagttttcctcaattatttcctcaagtagattttccacactttttacccttcattctcccttaggaatacctatgattcatgggttcagatgttttacataaccccatacttcctgaaggctttgttcatattttaattatcttttctttctttttgtctgactgggttaatttgaaagacctgtcttcaagctctgaaattctttcttctgcttggtctagtctattgttaaagctttcagctgcatttggaactactttgatgaattttttatttccaggtggtttaattttttttttttttt-cttttgagaaggagtctcgctctgtcgcccaggctggagtgcagtggcgcaatctcggctcactgcaagctccgcctcccgggttcagaccattctcctgcctcagcctcctgagtagctaggactacaggcgcctgcaaccaggcccggctaattttttgtattttgagtagagacgaggtttcactgtgttagccaggatggtctagatctcctggcctcgtgatctgcccgcctcagcctcccaaaatgctgggattacaggcgtgagccaccgcacccagcccaggtggtttacttttttaaaaatatttatctcttggtaaattttttattcatatgctgaattgattttttacatttctttgtgttgttttcaactttctcttggatttcattgagcttctttataatcattattttgaattatttatttggtatttcaaagattttatttttgttaggatctattgctagaaagttagtgtaatgttttggggatgtcataacactctattttttcagagtatgttttcaaaacattctactgttttcaacagagaaacaaaggacttacttaaaaaatagaaaacatagagagttccagaatcatttatttggttccttctcatctgtagaaactttctcttcttatttttgaatttatttcatttgggcaggatttttttttccctttacaatgtgactataatgtatgttgtttaaggtcctttgcatttggttgtgaatgctttcagtggcaaagactctgtagttgtcccctggttatagatagcctttgtatggtggctttctcaaatgccagttgtggtggtgatgtactgggagtgtgaacaggctcacagcctcctgcagggccaggatggcagaggtttaagaagtttatctcatttcctcttttggaagagatgagaagtttatttccactcatgtgcccttttgtcaactgatttgtattgaggtgcgtggttcagcctccagaacagtaggtgggcttatgcctaaaagcctatgcggcagaagcacgtgagtatatgcttcatcattgtatacctagaaaagttctctgttgcctcaggaaatgtgctggtaagtggaatgtacagcagcctgggctccctgctcagcaccagagagggggacatagctgagtagagctggatccccaagcctgccccacgatggtgagcacaggcagcagctttcaggcaggagtggtggcatgggaaacttctggtgaaacgtgcctaggtctccacagatgaggagagggctgccccagcttcatgacctggccaggcaggaataccatccatttccctgtcattccctagtcctggcatcggggaaactcaaattgaccagacactactctctatctccaactgcaatgtagttgagactcattaaagatgtcttctcctcagcttaccatttaaaagtctttggtgcagagcatcctccctcaaccccaaacacatagcttttctttttcttttttttttt-----tgagatggagttttgctcttgttgcccaggctggagtgcaatggcgcgatctcagctcaccgcaacctccacctcccaggttcaagcaactctcctgcctcagcctctcgagtacctgggattacaggcatgcgccaccgcgcctggctaattgtttttgtagttttagtagagacggggtttctccatgttggtcaggctggtctcgaactcctgacctcagatgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggcctgcacgtagattttcagctttcctgctctccactgcaggaatgctagcactccctgtagagaggggaaagggccctgtctttcacacaagcctggcccaaatggccacactgccagtggaaacacagtcacccctgatagtcctagaaaggctcttctctggcacacatgtgccaatttcccatgggagtggccatgctgtgtttgaagcagtggtggatgggggaagggcaggagaatttcccctttccatgcctgatcctaagcactggggctgcttggctgctgggatggaactacactccttcagcgcagagctgaacacggtgtccacgactctgctggaagtggtgcagtcactcagcccacaaacaaggagctctcggacacagaagagtacatggtctggcctcctttgtcccaaatggtactttttttgtgtactgcagtctccctttccttaggagcagcaatccctgatggctagaccactgggaaccctgcagctccactgggtccagccagccctgtgtggctgccacaatccaagtgggcactgggggcatggctgcaggagcttctgtgatgtgaatatacaaaggttggggttccctgggaaggacacagtcccctgatggctacactcctaatatggcaccctgccaacactgcccaagtctggaggagggacaagtgacacagcgcaagttggttgtctggtgtgatgccctccagaagttcccaaatcgccatgcacatcagtgtttggctttgtgagggcagaggagctctccgacagttcagatactggtggtcttccttagggacgacgggagtcaaaacactcctatcttacctttcaatgaaatgccaagtctctcaagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30154663 3519 + 173848474 -------------------ttttttnttttttttttttttttgtagacggagtctcgctccgtcgtccaggctggcgtgcagtggcgcgatctcggctcactgcaagctccgcctcccgggttctggccattctccttcctgcctcaccttcgcgagtagctgggactacaggcgcctgcaaccacgcccggctagttttttgtatttttagtagagacggggtttcacagtgttacccaggacagtatcgatctcctgacctcgtgatccacccaccttagcctcccaaagtactgggattacaggcgtgacccaccgggcccggcctgaaaaatccactgttagactgatggaatttcctatacaggtttttaggacactttttctcttctcttgctcattttaagattttttttcctttacattgagtttagattgtctgatgactatttgtcttggtgaagtccatcttgcaatgtattttccaggagttctttaagtatcttctatctggattttaaatctgtagccagagttagggaagttttcctcaattatttcctcaagtagattttccacactttttacccttcattctcccttaggaatacctatgattcatgggttcagatgttttacataaccccatacttcctgaaggctttgttcatattttaattatcttttctttctttttgtctgactgggttaatttgaaagacctgtcttcaagctctgaaattctttcttctgcttggtctagtctattgttaaagctttcagctgcatttggaactactttgatgaattttttatttccaggtggtttaatttttttttttt----cttttgagaaggagtctcgctctgtcgcccaggctggagtgcagtggcgcaatctcggctcactgcaagctccgcctcccgggttcagaccattctcctgcctcagcctcctgagtagctaggactacaggcgcctgcaaccaggcccggctaattttttgtattttgagtagagacgaggtttcactgtgttagccaggatggtctagatctcctggcctcgtgatctgcccgcctcagcctcccaaaatgctgggattacaggcgtgagccaccgcacccagcccaggtggtttac-tttttaaaaatatttgtctcttggtaaattttttattcatatgctgaattgattttttacatttctttgtgttgttttcaactttctcttggatttcattgagcttctttataatcattattttgaattatttgtttggtatttcaaagattttatttttgttaggatctattgctagaaagttagtgtaatgttttggggatgtcataacactctattttttcagagtATGTTTTCAAAACATTCTACTGTTTTCAACAGAGAAACAAAGGACTTACTTAAAAAATAGAAAACATAGAGAGttccagaatcatttatttggttccttctcatctgtagaaactttctcttcttatttttgaatttatttcatttgggcagga-ttttttttccctttacaatgtgactataatgtatgttgtttaaggtcctttgcatttggttgtgaatgctttcagtggcaaagactctgtagttgtcccctggttatagatagcctttgtatggtggctttctcaaatgccagttgtggtggtgatgtactgggagtgtgaacaggctcacagcctcctgcagggccaggatggcagaggtttaagaagtttatctcatttcctcttttggaagagatgagaagtttatttccactcatgtgcccttttgtcaactgatttgtattgaggtgcgtggttcagcctccagaacagtaggtgggcttatgcctaaaagcctatgcggcagaagcacgtgagtatatgcttcatcattgtatacctagaaaagttttctgttgcctcaggaaatgtgctggtaagtggaatgtacagcagcctgggctccctgctcagcaccagagagggggacatagctgagtagagctggatccccaagcctgccccacgatggtgagcacaggcagcagctttcaggcaggagtggtggcatgggaaacttctggtgaaacgtgcctaggtctccacagatgaggagagggctgccccagcttcatgacctggccaggcaggaatgccatccatttccctgtcattccctagtcctggcatcggggaaactcaaattgaccagacactactctctatctccaactgcaatgtagttgagactcattaaagatgtcttctcctcagctcaccatttaaatgtctttggtgcagagcatcctccctcaaccccaaacacatagcttttc-ttttcttttttttttt------gagatggagttttgctcttgttgcccaggctggagtgcaatggcgcgatctcagctcaccgcaacctccacctcccaggttcaagcaactctcctgcctcagcctctcgagtacctgggattacaggcatgcgccaccgcgcctggctaattgtttttgtagttttagtagagacggggtttctccatgttggtcaggctggtctcgaactcctgacctcagatgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggcctgcacatagcttttcagctttcctgctctccactgcaggaatgctagcactccctgtagagaggggaaagggccctgtctttcacacaagcctggcccaaatggccacactgccagtggaaacacagtcacccctgatagtcctagaaaggctcttctctggcacacatgtgccaatttcccatgggagtggccatgctgtgtttgaagcagtggtggatgggggaagggcaggagaatttcccctttccatgcctgatcctaagcactggggctgcttggctgctgggatggaactacactccttcagcgcagagctgaacacagtgtccacgactctgctggaagtggtgcagtcactcagcccacaaacaaggagctctcggacacagaagagtacatggtctggcctcctttgtcccaaatggtactttttttgtgtattgcagtctccctttccttaggagcagcaatccctgatggctagaccactgggaaccctgcagctccactgggtccagccagccctgtgtggctgccacaatccaagtgggcactgggggcatggctgcaggagcttctgtgatgtgaatatacaaaggttggggttccctgggaaggacacagtcccctgatggctacactcctaatatggcaccctgccaacactgcccaagtctggaggagggacaggtgacccagcgcaagttggttgtctggtgtgatgccctccagaagttcccaaatcgccatgcacatcagtgtttggctttgtgagggcagaggagctctccgacagttcagatactggtggtcttccttagggacgacgggagtcaaaacactcctatcttacctttcaatgaaatgccaagtctctcaagg
i panPan2.chr6             M 606 C 0
s gorGor5.CYUI01015250v1    5954624 3536 +   6154872 ttttctttttttcttcttttttttttcttttctttttttttttgagacggagtctcgctctgtcgtccaggctggcgtgcagtggcgccatctcggctcactgcaagctccgcct-gcgggttctggccattctccttcctgcctcagcttcgcgagtagctgggactacaggcgcctgcaaccacgcccggctaattttttgtatttttagtagagacggggtttcactctgttacccaggacagtatcgatctcctgacctcgtgatccaccaaccttagcctcccaaagtactgggattacaggcgtgagccaccgtgcccggcctgaaaaattcactgttagactgatggaatttcctatataggtttttaggacactttttctcttctcttgctcattttaagattttttttcctttacattgagtttagactgtctgatgactatttgtcttggtgaagtccatcttgcaatgtattttccaggagttctctaagtatcttctatctggattttaaatctctagccagggttagggaagttttcctcaattatttcctcaagtagattttccacactttttacccttcattctcccttaggaatacctatgattcatgggttcagatgttttacataaccccatacttcctgaaggctttgttcatattttaattctcttttctttctttttgtctgactgggttaatttgaaagacctgtcttcaagctctgaaattctttcttctgcttggtctagtctattgttaaagctttcagctgcatttggaactactttgatgaattttttatttccaggtggattaatttttttt--------tttttgagaaggagtctcgctctgtcgcccaggctggagtgcagtggcgcaatcttggctcactgcaagctctgcctcccgggttcagaccattctcctgcctcagcctcccaagtagctaggactacaggcgcctgcaaccaggcccggctaattttttgtatttttaatagagacgaggtttcactgtgttagccaggatggtctcgatctcctggccttgtgatctgcccgcctcagcctcccaaaatgctgggattacaggagtgagccaccgcgcccagcccaggtggtttacttttttaaaaatatttatctcttggtaaattttttattcatatgctgaattgattttttacatttctttgtgttgttttcaactttctcttggatttcattgagcttctttataatcattattttgaattatatatttggtatttcaaagattttatttttgttaggatctattgctagaaagttagtgtaatgttttggggatgtcataacactctattttttcagagtatgttttcaaaacattctacagttttcaacagagaaacaaagg----acttaaaaaacagaaaacatagagacttccagaatcatttctttggttccttctcatctgtagaaactttctcttcttatttttgaatttatttcatttgggcagga--tttttttccctttacgatgtgactataatgtatgttgtttaaggtcctttgcatttggttgtgaatgctttcagtggcaaagactctgtagttgtcccttggttatagatagcctttgtatggtggctttctcaaatgccggttgtggtggtgatgtactgggagtgtgaacaggcttacagcctcctgcagggccaggatggcagaggtttaagaagtttatctcattttctcttttggaagagatgagaagtttatttccactcatgtgcccttttgtcaactgatttgtattgaggtgcatggttcagcctccggaacagtaggtgggcttatgcctaaaagcctatgcggcagaagcacgtgagtatatgcttcatcattgtatacctagaaaagttctctgttgcctcaggaaatgtgctggtaagtggaatgtacagcagcctgggctccctgctcagcaccagagagggggacatagctgagtagagctgtatccccaagcctgccccacgatggtgagcacaggcagcagctttcaggcaggagtggtggcatgggaaacttctggtgaaatgtgcctaggtctccacagatgaggagagggctgccccagcttcatgacctggccaggcaggaatgccatccatttccctgtcattccctagtcctggcatcggggaaactcaaattgaccagacactactctctatctccaactgcaatgtagttgagactcattaaagatgttttctcctcagctcaccatttaaatgtctttggtgcagagcatcctccctcagccccaaacacatagcttttctttttctttttttttttttttttgagacggagttttgctcttgttgcccaggctggagtgcaatggcgcgatctcagctcaccgcaacctccacctcccaggttcaagcaattctcctgcctcagcctctcgagtagctgggattacaggcatgcgccaccacgcctggctaattgtttttgtagttttagtagagacggggtttctccgtgttggtcaggctggtctcgaactcctgacctcagatgatcctcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggcctgcacatagcttttcagctttcctgctctccactgtaggaatgctagcactccctgtagagagggggaagggccctgtctttcgcacaagcctggcacaaatggccacactgccagtggaaacacagtcacccctcatagccctagaaaggctcttctctggcacacatgtgccaatttcccatgggagtggccatgctgtgtttgaagcagtggtggatgggggaagggcaggagaatttcccctttccatgcctgatcctaagcactggggctgcttggctgctgggatggaactacactccttcagcgcagagctgaacacagtgtccacaactctgctggaagtggtgcagtcactcagcccacaaacaaggagctctcggacacagaagagtacatggtctggcctcctttgtcccaaatggtactttttttgtgtactgcagtctccctttccttaggagcagcaatccctgatggctagaccactgggaaccctgcagctccactgggtccagccagccctgtgtggctgccacaatctaagtgggcactgggggcatggctgcaggagcttctgtgatgtgaatatacaaaggttggggttccctgggaaggacacagtcccctgatggctacactcctaatatggcaccctgccaacactgtccgagtctggaggagggacaagtgacacagcgcaagttggttgtctggtgtgatgccctccagaagttcccaaatcgccatgcacatcagtgtttggctttgtgagggcagaggagctctccgacagttcagatgctggtggtcttccttagggacgacgggagtcaaaacactcctatcttacctttcagtgaaataccaagtctctcaagg
i gorGor5.CYUI01015250v1   C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      80793 12582 +    132061 I
e colAng1.NW_012115566v1    2713818 6512 -   3067355 I
e manLeu1.NW_012099233v1     260702 15425 +    290775 I
e chlSab2.chr17            29057949 8169 -  71996105 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e macNem1.NW_012011356v1    2853940 9339 -   2996164 I
e macFas5.chr4             29806520 7467 - 170955103 I
e rheMac8.chr4             30143030 7505 + 172585720 I
e nomLeu3.chr1a            74667414  766 + 122973662 I

a score=25864.000000
s hg38.chr6_GL000254v2_alt   961955 8 +   4827813 ttcctagc
s panTro5.chr6             29924720 8 + 175400573 ttcctagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30158182 8 + 173848474 ttcctagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5958160 8 +   6154872 ttcctcgc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30150535 8 + 172585720 ttcctagc
i rheMac8.chr4             I 7505 C 0
s macFas5.chr4             29813987 8 - 170955103 ttcctagc
i macFas5.chr4             I 7467 C 0
s macNem1.NW_012011356v1    2863279 8 -   2996164 TTCCTAGC
i macNem1.NW_012011356v1   I 9339 C 0
s chlSab2.chr17            29066118 8 -  71996105 ttcctagc
i chlSab2.chr17            I 8169 C 0
s manLeu1.NW_012099233v1     276127 8 +    290775 TTCCTAGC
i manLeu1.NW_012099233v1   I 15425 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      80793 12582 +    132061 I
e colAng1.NW_012115566v1    2713818 6512 -   3067355 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=61467.000000
s hg38.chr6_GL000254v2_alt   961963 15 +   4827813 tgatttctgccagct
s panTro5.chr6             29924728 15 + 175400573 tgatttctgccagct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30158190 15 + 173848474 tgatttctgccagct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5958168 15 +   6154872 tgatttctgccagct
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30150543 15 + 172585720 tgatttctgccagcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29813995 15 - 170955103 tgatttctgccagcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2863287 15 -   2996164 TGATTTCTGCCAGCC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29066126 15 -  71996105 tgatttctgccagcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     276135 15 +    290775 TGATTTCTGCCAGCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2720330 15 -   3067355 TGATTTCTGCCAGCC
i colAng1.NW_012115566v1   I 6512 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      80793 12582 +    132061 I
e cerAty1.NW_012002711v1     600822 7560 +    766320 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=1607230.000000
s hg38.chr6_GL000254v2_alt   961978 339 +   4827813 tctt-actttcttctttttttctgtctcagcttttccccatgagttctGAAACATTCTGATGTGATTCTGACAGCTAtttccacactcaggctgggccctggaggagtgccctctgctggttctctgagacctgtggctgggatcatctctgataaggtttgggtgtttgtcccctccaaatctcatgttgaaa---gatccccagtgttggagctggggcctagtgggaggcgtttgggtcatgggaccggttctctcttgagtggcttagtaccctgcccatggtaatgagtgagctttcactctattcgttcacacgagagctgattatttaaaagagcc
s panTro5.chr6             29924743 339 + 175400573 tctt-actttcttctttttttctgtctcagcttttccccatgagttctGAAACATTCTGACGTGATTCTGACAGCTAtttccacactcaggctgggccctggaggagtgccctctgctggttctctgagacctgtggctgggatcatctctgataaggtttgggtgtttgtcccctccaaatctcatgttgaaa---gatccccagtgttggagctggggcctagtgggaggcgtttgggtcatgggagcggttctgtcatgagtggcttagtaccctgcccatggtaatgagtgagctttcactctattcgttcacacgagagctgattatttaaaagagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30158205 339 + 173848474 tctt-actttcttctttttttctgtctcagcttttccccatgagttctGAAACATTCTGACGTGATTCTGACAGCTAtttccacactcaggctgggccctggaggagtgccctctgctggttctctgagacctgtggctgggatcatctctgataaggtttgggtgtttgtcccctccaaatctcatgttgaaa---gatccccagtgttggagctggggcctagtgggaggcgtttgggtcatgggagcggttctgtcatgagtggcttagtaccctgcccatggtaatgagtgagctttcactctattcgttcacacgagagctgattatttaaaagagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5958183 339 +   6154872 tcttaaccttcttctttttttctgtctcagcttttccccatgagttctGAAACATTCTGACGTGATTCTGACAGCTAtttccacgctcaggctgggccc-ggaggagtgccctctgctggttctctgagacctgtggctgggatcatctctgataaggtttgggtgtttgtcccctccaaatctcatgttgaaa---gatccccagtgttggagctggggcctagtgggaggcgtttgggtcatgggagcggttctctcatgagtggcttagtaccctgcccatggtaatgagtgagctttcactctattcgttcacacaagagctgattatttaaaagagcc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30150558 340 + 172585720 tctt-actttcttctttttttctgtctcagcttttacccatgagttctGAAACATTCTGATGTGATTCTGACAGCTAtttccacactcaggctgggccccggaggagtgccctctgctggttctctgagacctgtggctgggatcatctctgataaggtttgggggtttgtcccctccaaatttcatgttgaaatgtgatccccagtgtaggagctggggcctagtgggaggcatttgggtcacgggatcggttctctcatgagtggcttagtaccctgcccgtggtaatgagtgagttttcactc--tttgttcacacaatacctgattattttaaaaagcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29814010 340 - 170955103 tctt-actttcttctttttttctgtctcagcttttacccatgagttctGAAACATTCTGATGTGATTCTGACAGCTAtttccacactcaggctgggccccggaggagtgccctctgctggttctctgagacctgtggctgggatcatctctgataaggtttgggggtttgtcccctccaaatttcatgttgaaatgtgatccccagtgtaggagctggggcctagtgggaggcatttgggtcacgggatcggttctctcatgagtggcttagtaccctgcccgtggtaatgagtgagttttcactc--tttgttcacacaatacctgattattttaaaaagcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2863302 340 -   2996164 TCTT-ACTTTCTTCTTTTTTTCTGTCTCAGCTTTTACCCATGAGTTCTGAAACATTCTGACGTGATTCTGACAGCTAtttccacactcaggctgggccccagaggagtgccctttgctggttctctgagacctgtggctgggatcatctctgataaggtttgggggtttgtcccctccaaatttcatgttgaaatgtgatccccagtgtaggagctggggcctagtgggaggcatttgggtcatgggaacagttctctcatgaatggcttagtaccctgcccgtggtaatgagtgagttttcactc--ttcagtcacacaatagctgattattttaaaaaacc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     608382 340 +    766320 tctt-actttcttctttttttctgtctCAGCTTTTACCCATGAGTTCTGAAACATTCTGACGTGATTCTGACAGCTAtttccacactcaggctgggccccggaggagtgccctctgctggttctctgagacctgtggctgggatcatctctgataaggtttgggggtttgtcctctccaaatttcatgttgaaatgtgatccccagtgttggagctggggcctagtgggaggcatttgagtcatgggagcggttctctcatgaatggctgagtaccctgcccgtggtaatgagtgagttttcactc--ttcgttcacacaatagctgattatttaaaaaagcc
i cerAty1.NW_012002711v1   I 7560 C 0
s chlSab2.chr17            29066141 329 -  71996105 tctt-actttcttctttttttctgtctCAGCTTTTACCCATGAGTTCTAAAACATTCTGACGTGATTCTGACAGCTATTTccacactca-----------ggaggagtgccctctgctggttctctgagacctgtggctgggatcatctctgataaggtttgggggtttgtctcctccaaatttcatgttgaaatgtgatccccagtgtaggagctggggcctagtgggaggcatttgggtcatgggaacggttctctcatgaatggcttagtaccctgcccgtggtaatgagtgagttttcactc--ttcgttcacacaatagctgattatttaaaaaagcc
i chlSab2.chr17            C 0 I 2242
s manLeu1.NW_012099233v1     276150 340 +    290775 CCTT-ACTTTCTTCTTTTTTTCTGTCTCAGCTTTTACCCATGAGTTCTGAAACATTCTGACGTGATTCTGACAGCTAtttccacactcaggctgggccccggaggagtgccctctgctggttctctgagacctgtggctgggatcatctctgataaggtttgggggtttgtcccctccaaatttcatgttgaaatgtgatccccagtgttggagctggggcctagtgggaggcatttgggtcataggagcggttctctcatgaatggctgagcaccctgcccggggtaatgagtgagttttcactc--ttcgttcacacaatagctgattatttaaaaaagcc
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2720345 340 -   3067355 CCTT-ACTTTCTCCTTTTTTTCTGTCTCAGCTTTTACCCATGAGTTCTGAAACATTCTGACGTGATTCTGACAGCTAtttccacactcagactgggccccggaggagtgccctctgctggttctctgagacctgtggctgggatcatctctgataaggtttgggggtttgtcccctccaaatttcatgttgaaatgtgatccccggtgttggagctggggcctagtgggaggcatttgggtcatgggagcggttctctcatgaatggcttagtaccctgcccgtggtaatgagtgagttttcactc--tttgttcacacagtagctgattattttaaaaagcc
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      80793 12582 +    132061 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=1281045.000000
s hg38.chr6_GL000254v2_alt   962317 325 +   4827813 tagcagctctcttgctctttctctctccatgtgacacacctgctcttcctttgccttctgccacaagtaaaagcttcctgagacttcaccagaatcctagtggagctggccccatgattgtacagcctgcagaactgtgagccaaataaatctcttttctttataaattacttaaacccaggtattcctttacaacaacgcaaatggactaatacagtctccctctgctgcctccaaggtcactccttgatcttcactgctttaggcagccttttaccctactttgtagttggagcttCAGGGGCTTAACATCTTAAAAGTTTTA
s panTro5.chr6             29925082 325 + 175400573 tagcagctctcttgctccttctctctccatgtgacacacctgctcctcctttgccttctgctacgagtaaaatcttcctgagacttcaccagaatcctagtggagctggccccatgattgtacagcctgcagaactgtgagccaaataaatctcttttctttataaattacttaaacccaggtattcctttacaacaacgcaaatggactaatacggtctccctctgctgcctccaaggtcactccttgatcttcactgctttaggcagccttttaccctactttgtagttggagcttCAGGGGCTTAACATCTTAAAAGTTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30158544 325 + 173848474 tagcagctctcttgctccttctctctccatgtgacacacctgctcctcctttgccttctgctacgagtaaaatcttcctgagacttcaccagaatcctagtggagctggccccatgattgtacagcctgcagaactgtgagccaaataaatctcttttctttataaattacttaaacccaggtattcctttacaacaacgcaaatggactaatacggtctccctctgctgcctccaaggtcactccttgatcttcactgctttaggcagccttttatcctactttgtagttggagcttCAGGGGCTTAACATCTTAAAAGTTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5958522 325 +   6154872 tagcagctctcttgctccttctttctccatgtgacacaactgctcctcctttgccttctgccacgagtaaaagcttcctgacacttcaccagaatcctagtggagctggccccatgattgtacagcctgcagaactgtgagccaaataaatctcttttctttataaattacttaaacccaggtattcctttacaacaacgcaaatggactaatacagtctccctctgctgcctccaaggtcactccttgatcttcactgctttaggcagccttttaccctactttgtagttggagcttCAGGGGCTTAACATCTTAAAAGTTTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30150898 325 + 172585720 tagcaactctcttgctccttgtctctccatgtgacacacctgctcctcctttgccttttgccacaagtaaaagcttcctgagacttcactagaagcctagtggagctggcaccatgattgtacagcctgcagaacggtgagccaaataaatctcctttctttataaatttcctaaccccaggtattcctttataacaacacaaatggacgaatgcagtctccctctgctgcctccaaggtcacgccttgatcttcactgccttaggcagccttttatcctactttgtagttggagcttCAAGGGCTCAACATCCTAAAAGCTTTA
i rheMac8.chr4             C 0 I 1303
s macFas5.chr4             29814350 325 - 170955103 tagcaactctcttgctccttgtctctccatgtgacacacctgctcctcctttgccttttgccacaagtaaaagcttcctgagacttcactagaagcctagtggagctggcaccatgattgtacagcctgcagaacggtgagccaaataaatctcctttctttataaatttcctaaccccaggtattcctttataacaacacaaatggacgaatgcagtctccctctgctgcctccaaggtcacgccttgatcttcactgccttaggcagccttttatcctactttgtagttggagcttCAAGGGCTTAACATCCTAAAAGCTTTA
i macFas5.chr4             C 0 I 1269
s macNem1.NW_012011356v1    2863642 325 -   2996164 tagcagctctcttgctccttctctctccatgtgacatacctgctcctcctttgccttttgccacaagtaaaagcttcctgagacttcactagaagcctagtggagctggcaccatgattgtacagcctgcagaactgtgagccaaacaaatctcctttctttataaattacccaaccccaggcattcctttataacaacacaaatggactaatgcagtctccctctgctgcctccaaggtcacgccttgatcttcactgctttaggcagccttttatcctacttcgtagttggagcttCAAGGGCTTAACATCCTAAAAGTTTTA
i macNem1.NW_012011356v1   C 0 I 1565
s cerAty1.NW_012002711v1     608722 325 +    766320 tagcagctctcttgctccttctctctccatgtgacacacctgctcctcctttgccttttgccacaagtaaaagcttcctgagacttcactagaagcctagtggacctggcatcatgattgtagagcctgcagaactgtgagccaaataaatctcctttctttataaattacctaaccccaggtattcctttataacaacacaaatggactaatgcagtctccctctgctgcctccaaggtcacgccttgatcttcactgccttaggcagccttttatcctactttgtagttggagcttCAAGGGCTTAACATCCTAAAAGTTTTA
i cerAty1.NW_012002711v1   C 0 I 1581
s manLeu1.NW_012099233v1     276490 325 +    290775 tagcagctctcttgctccttctctctccatgtgacacacctgctcctcctttgccttttgccacaagtaaaagcttcctgagacttcactagaagcctagtggacctggcaccatgattgtagagcctgcagaactgtgagccaaataaatctcctttctttataaattacctaaccccaggtattcctttataacaacacaaatggactaatgcagtctccctctgctgcctccaaggtcacgccttgatcttcactgccttaggcagccttttatcctactttgtagttggagcttCAAGGGCTTAACATCCTAAAAGTTTTA
i manLeu1.NW_012099233v1   C 0 I 6300
s colAng1.NW_012115566v1    2720685 325 -   3067355 tagcagctctcttgttccttctctctccatgtgacacacctgctcctcctttgccttttgccacaagtaaaagcttcctaagacttcactagaagcctagtggagctggcaccatgattgtacagcctgcagaactgtgagccaaataaatctcctttcttcataaattacctaaccccaggtattcctttataacaacacaaatggactaatgcagtctccctctgctgcctccaaggtcacgccttgatcttcactgctttaggcagccttttatcctactttgtagttggagcttCAAGGGCTTAACATCCTATAAGTTTTA
i colAng1.NW_012115566v1   C 0 I 1316
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      80793 12582 +    132061 I
e chlSab2.chr17            29066470 2242 -  71996105 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=99298.000000
s hg38.chr6_GL000254v2_alt   962642 189 +   4827813 TTTTATTTTTTAATTTATGCTTTTTAAAAAAAtttttttgagatggagttttgctcttgttgcccaggctggagtgcaatggtgtgatctcggctcaccgcaacctctgcctcctgggttcaagcgattctcctgcctcagcctcccaagtaggtgggattacaggcgcgcaacaccatgctcggctaa
s panTro5.chr6             29925407 189 + 175400573 TTATTTTTTTTAATTTATGCTTTTTAAAAAAAtttttttgagatggagtttcactcttgttgcccaggctggagtgcaatggcgtgatctcggctcaccgcaacctctgcctcctgggctcaagcgattctcctgcctcagcctcccaagtaggtgggattacaggcgtgcgacaccatgctcggctaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30158869 189 + 173848474 TTATTTTTTTTAATTTATGCTTTTTAAAAAAAtttttttgagatggagtttcgctcttgttgcccaggctggagtgcaatggcgtgatctcggctcaccgcaacctctgcctcctgggctcaagcgattctcctgcctcagcctcccaagtaggtgggattacaggcgtgcgacaccatgctcggctaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5958847 189 +   6154872 TTTTTTTTTTAAATTTGTGCTTTAAAAAAAtttttttttgagatggagtttcgctcttgttgcccaggctggagtgcaatggcgtgatctcggctcaccgcaacctctgcctcctgggttcaagcaattctcctgcctcagcctcccaagtaggtgggattacaggcgcgcgacaccgtgctcagctaa
i gorGor5.CYUI01015250v1   C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      80793 12582 +    132061 I
e colAng1.NW_012115566v1    2721010 1316 -   3067355 I
e manLeu1.NW_012099233v1     276815 6300 +    290775 I
e chlSab2.chr17            29066470 2242 -  71996105 I
e cerAty1.NW_012002711v1     609047 1581 +    766320 I
e macNem1.NW_012011356v1    2863967 1565 -   2996164 I
e macFas5.chr4             29814675 1269 - 170955103 I
e rheMac8.chr4             30151223 1303 + 172585720 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=30215.000000
s hg38.chr6_GL000254v2_alt   962831 46 +   4827813 tttttgttgttttagtagaaacagtgtttcaccatgttggtcaggc
s panTro5.chr6             29925596 46 + 175400573 tttttgttgttttagtagaaacagggtttcaccatgttggtcagtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30159058 46 + 173848474 tttttgttgttttagtagaaacagggtttcaccatgttggtcagtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5959036 46 +   6154872 tttttgttgttttagtagaaacagggtttcaccatgttggtcaggc
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29815944 36 - 170955103 tttttgtatttttagtagagacgtgttttcaccgtg----------
i macFas5.chr4             I 1269 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      80793 12582 +    132061 I
e colAng1.NW_012115566v1    2721010 1316 -   3067355 I
e manLeu1.NW_012099233v1     276815 6300 +    290775 I
e chlSab2.chr17            29066470 2242 -  71996105 I
e cerAty1.NW_012002711v1     609047 1581 +    766320 I
e macNem1.NW_012011356v1    2863967 1565 -   2996164 I
e rheMac8.chr4             30151223 1303 + 172585720 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=977264.000000
s hg38.chr6_GL000254v2_alt   962877 210 +   4827813 tggtctcgaactcccgacctcatgatctgcccgccttggcctcccaaaatgctgggattacaggcatgagccaccgcacccag-ccAAATGATTTTTAAAAAATAATTACTATGTATAAAATAACAAATAGGTAATTTGGGTAATTTCATTTTGAACTCTTTGGCTAAATATTTTATGTACATATTGTCTCAGCAATCAGGAATTAAAATT
s panTro5.chr6             29925642 210 + 175400573 tggtctcagactcccgacctcatgatccgcccgccttggcctcccaaaatgctgggattacaggcatgaaccaccgcacccag-ccAAAAGATTTTTTTAAAATAATTACTATGTATAAAATAACAAATAGGTAATTTGGGTAATTTTATTTTGAACTCTTTGGCTAAATATTTTATGTACATATTGTCTCAGCAATCAGGAATTAAAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30159104 210 + 173848474 tggtctcagactcccgacctcatgatctgcccgccttggcctcccaaaatgctgggattacaggcatgaaccaccgcacccag-ccAAAAGATTTTTTTAAAATAATTACTATGTATAAAATAACAAATAGGTAATTTGGGTAATTTTATTTTGAACTCTTTGGCTAAATATTTTATGTACATATTGTCTCAGCAATCAGGAATTAAAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5959082 210 +   6154872 tggtctcgaactcccgacctcatgatccacccaccttggcctcccaaaatgctgggattacaggcatgaaccaccgcacccag-ccAAAAGATTTTTAAAAAATAATTACTATATATAAAATAACAAATAGGTAATTTGGGTAATTTTATTTTGAACTCTTTGGCTAAATATTTTATGTACATATTGTCTCAGCAATCAGGAATTAAAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30152526 211 + 172585720 tggtctcaatctcctgacctcatgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcccagccCAAAAGATTTTTAAAAAATAATTACTATGCATAAAATAATGAATAGGTAATTTAGGTAATTTTATTTTGAACTCTTTGGTTAAATATTTTATGTACATATTGTCTCAGCAATCAGGAATTAAAATT
i rheMac8.chr4             I 1303 C 0
s macFas5.chr4             29815980 209 - 170955103 --gtctcaatctcctgacctcatgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcccagccCAAAAGATTTTTAAAAAATAATTACTATGCATAAAATAATGAATAGGTAATTTAGGTAATTTTATTTTGAACTCTTTGGTTAAATATTTTATGTACATATTGTCTCAGCAATCAGGAATTAAAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2865532 211 -   2996164 tggtctcgatctcctgacctcgtgatctgcccgcctcggcctcccaaagtgttgggattacaggcgtgagccactgcgcccagccCAAAAGATTTTTAAAAAATAATTACGATGCATAAAATAATGAATAGGTAATTTAGGTAATTTTATTTTCAACTCTTTGGTTAAACATTTTATGTACATATTGTCTCAGCAATCAGGAATTAAAATT
i macNem1.NW_012011356v1   I 1565 C 0
s cerAty1.NW_012002711v1     610628 211 +    766320 tggtctcgatctcctgacctcgtgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagccCAAAAGATTTTTAAAAAATAATTACTATGCATAAAATAATGAATAGGTAATTTAGGTAATTTTATTTTGAACTCTTTGGTTAAACATTTTATGTACATATTGTCTCAGCAATCAGGAATTAAAATT
i cerAty1.NW_012002711v1   I 1581 C 0
s chlSab2.chr17            29068712 211 -  71996105 tggtctcaatctcctgacctcatgatctgccctcctcggcctcccaaagtgctaggattataggtgtgagccactgcgcccagccCAAAAGATTTTTTAAAAATAATTACTATGTATAAAATAATAAATAGGTAATTTAGGTAATTTTATTTTGAACTCTTTGGTTAAATATTTTATGTACATATTGTCTCAGCAATCAGGAATTAAAATT
i chlSab2.chr17            I 2242 I 750
s manLeu1.NW_012099233v1     283115 211 +    290775 tggtctcgatctcctgacctcgtgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagccCAAAAGATTTTTAAAAAATAATTACTATGCATAAAATAATGAATAGGTAATTTAGGTAATTTTATTTTGAACTCTTTGGTTAAATATTTTATGTACATATTGTCTCAGCAATCAGGAATTAAAATT
i manLeu1.NW_012099233v1   I 6300 C 0
s colAng1.NW_012115566v1    2722326 211 -   3067355 tggtctcgatctcctgacctcgtgatctgcccgcctcggcctcccaaagtactgggattataggcatgagccacagcactcagccCAAAAGATTTTTTAAAAATGATTACTATGTATAAAATAATAAATAGGTAATTTAGGTAATTTTATTTTGAACTCTTTGGTTAAATATTTTATGTACATATTGTCTCAGTAATCAGGAATTAAAATT
i colAng1.NW_012115566v1   I 1316 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      80793 12582 +    132061 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=303025.000000
s hg38.chr6_GL000254v2_alt   963087 70 +   4827813 TATAAACACTATTAACAAGCAATACTCTCTGATTTGAAGGAGAATCTAATTTGGAAGTCAGTCACATGAT
s panTro5.chr6             29925852 70 + 175400573 TATAAATACTATTAACAAGCAATACTCTCTGATTTGAAGGAGAATCTAATTTGGAAGTCAGTCACATGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30159314 70 + 173848474 TATAAACACTATTAACAAGCAATACTCTCTGATTTGAAGGAGAATCTAATTTGGAAGTCAGTCACATGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5959292 68 +   6154872 TACAAACACTATTAACAAGCAATA--CTCTGATTTGAAGGAGAATCTAATTTGGAAGTCAGTCACATGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30152737 69 + 172585720 TATAAACACTATTAACAA-CAATACTCTCTGATTTGAAGGAGAATCTAACTTGGAAGTCAGTCACATGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29816189 69 - 170955103 TATAAACACTATTAACAA-CAATACTCTCTGATTTGAAGGAGAATCTAACTTGGAAGTCAGTCACATGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2865743 68 -   2996164 TAT-AACACTATTAACAA-CAATACTCTCTGACTTGAAGGAGAATCTAATTTGGAAGTCAGTCACATGAT
i macNem1.NW_012011356v1   C 0 I 702
s cerAty1.NW_012002711v1     610839 68 +    766320 TAT-AACACTATTAACAA-CAATACTCTCTGACTTGAAGGAGAATTTAATTTGGAAGTCAGTCACATGAT
i cerAty1.NW_012002711v1   C 0 I 3838
s chlSab2.chr17            29069673 66 -  71996105 TATAAACACTATT---AA-CAATACTCTCTGATCTGAAGGCGAATGTAATTTGGCAGTCAGTCACATGAT
i chlSab2.chr17            I 750 C 0
s manLeu1.NW_012099233v1     283326 69 +    290775 TATAAACACTATTAACAA-CAATACTCTCTGATTTGAAGGAGAATCTAATTTGGAAGTCAGTCACATGAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2722537 69 -   3067355 TATAAACACTATTAACAA-CAATACTCTCTGATTTGAAGGAGAATCTGACTTGGAAGTCAGTCACATGAT
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      80793 12582 +    132061 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=215460.000000
s hg38.chr6_GL000254v2_alt   963157 71 +   4827813 GATTGTGTTTTTAAGTTTTTTTTTCCATGCATTTGTTATTTTATGAATTGGTCTGAATGATGAGGCCAGGC
s panTro5.chr6             29925922 70 + 175400573 GATTGTGTTTTTGAGTTTTTTTT-CCATGCATTTGTTATTTTATGAATTGGTCTGAATGATGAGGCCAGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30159384 70 + 173848474 GATTGTGTTTTTGAGTTTTTTTT-CCATGCATTTGTTATTTTATGAATTGGTCTGAATGATGAGGCCAGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5959360 71 +   6154872 GATTGTGTTTTTAAGTTTTTTTTCCCATGCATTTGTTATTTTATGAATTGGTCTGAATGATGAGGCCAGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30152806 69 + 172585720 GATTGTGTTTTAAAGTTTTTTT--CCATGCATTTGTTATTTTATGAATTGGTCTGAATGATGAGGCCAGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29816258 69 - 170955103 GATTGTGTTTTAAAGTTTTTTT--CCATGCATTTGTTATTTTATGAATTGGTCTGAATGATGAGGCCAGGC
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29069739 69 -  71996105 GATTGTGTTTTAAAGTTTTTTT--CCACGCATTTGTTATTTTATGAATTGGTCTGAATGATGAGGCCAGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     283395 69 +    290775 GATTGTGTTTTAAAGTTTTTTT--CCATGCATTTGTTATTTTATGAATTGGTCTGAATGATGAGGCCAGGC
i manLeu1.NW_012099233v1   C 0 I 6405
s colAng1.NW_012115566v1    2722606 69 -   3067355 GATTGTGTTTTAAAGTTTTTTT--CCATGCATTTGTTATTTTATGAATTGGTCTGAGTGATGAGGCCAGGC
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      80793 12582 +    132061 I
e cerAty1.NW_012002711v1     610907 3838 +    766320 I
e macNem1.NW_012011356v1    2865811 702 -   2996164 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=62251.000000
s hg38.chr6_GL000254v2_alt   963228 24 +   4827813 AAGTGTATACATCTTTTCACTGGT
s panTro5.chr6             29925992 24 + 175400573 AAGTGTATACATCTTTTCACTGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30159454 24 + 173848474 AAGTGTATACATCTTTTCACTGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5959431 24 +   6154872 AAGTGTATACATCTTTTCACTGGT
i gorGor5.CYUI01015250v1   C 0 I 187
s rheMac8.chr4             30152875 24 + 172585720 AAGTGTATACATCTTTTCACTGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29816327 24 - 170955103 AAGTGTATACATCTTTTCACTGGT
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29069808 24 -  71996105 AAGTGTATACATCTTTTCACTGGT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2722675 24 -   3067355 AAGTGTATATATCTTTTCACTGGT
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      80793 12582 +    132061 I
e manLeu1.NW_012099233v1     283464 6405 +    290775 I
e cerAty1.NW_012002711v1     610907 3838 +    766320 I
e macNem1.NW_012011356v1    2865811 702 -   2996164 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=1456453.000000
s hg38.chr6_GL000254v2_alt   963252 632 +   4827813 AGAAAAATCTGTAGCAAAGCCTGTGCCCTTTTTACAACAATGAC--tttt---ttttttttttttttttgagatgaagtctcactcttgtggcccaggctggagtgcaat----ggtgctatctgggctcactgcaacctcca------------------tctcctgcctcaacctcccgagtagctgggattacaggcgtccatcaacagtcccggctaatttttgtatttttggtagaggc-ggggtttcaccatgttggccaggctggtcttgaacccctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagcaaccacacccagcctggattttgaaaaatgtatagaatcatatatccactaccctagtaccatctacaacagttccttcatcctaaaaatttccctttgaatgttctttatcccttctccctccaaccttcgataaccattaacctgttttctgtccccatagatctgctttttccagaatggtatatgaattgagtcagataaaatgaagccttttgtgtctgacatttttttcacctggtaaaacgcatttaagattaattgatgtatggattaatagcttatttacatatatatatata------------tatat---ttttttttttt
s panTro5.chr6             29926016 625 + 175400573 AGAAAAATCTGTAGCAAAGCCTGTGCCCTTTTTACAACAATGAC--tttt---ttttttttttttttttgagatgaagtctcactcttgttgcccaggctggagtgcaat----ggtgctatctgggctcactgcaacctcca------------------tctcctgcctcaacctcccgagtagctgggattacaggcgcccatcaacacgcccggctaatttttgtatttttggtagaggc-ggggtttcaccatgttggccaggctggtcttgaacccctgacctcaggtgatccacccgcctcagcctcccaaagtgctgggattacaggcatgagcaaccatacccagccCGGAttttgacaaatgtatagaatcatatatccactaccctagtaccatctacaacagttccttcatcctaaaaatttccctttgaatgttctttatcccttctccctccaacctttgataaccattaacctgttttctgtccccatagatctgctttttccagaatggtatatgaattgagtcagataaaatgaagccttttgtgtctgacatttttttcacctagtaaaacgcatttaagattaattgatgtatggattaatagcttattTACATATATATATATA------------t----------tttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30159478 634 + 173848474 AGAAAAATCTGTAGCAAAGCCTGTGCCCTTTTTACAACAATGAC----tt---ttttttttttttttttgagatgaagtctcactcttgttgcccaggctggagtgcaat----ggtgctatctgggctcactgcaacctcca------------------tctcttgcctcaacctcccgagtagctgggattacaggcgcccatcaacacgcccggctaatttttgtatttttggtagaggcgggggtttcaccatgttggccaggctggtcttgaacccctgacctcaggtgatccacccgcctcagcctcccaaagtgctgggattacaggcatgagcaaccatacccagccCGGAttttgacaaatgtatagaatcatatatccactaccctagtaccatctacaacagttccttcatcctaaaaatttccctttgaatgttctttatcccttctccctccaacctttgataaccattaacctgttttctgtccccatagatctgctttttccagaatggtatatgaattgagtcagataaaatgaagccttttgtgtctgacatttttttcacctagtaaaacgcatttaagattaattgatgtatggattaatagcttatttacatatatatatata------------tatatatatTAtttttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5959642 632 +   6154872 agaaaaaTCTGTAGCAAAGCCTGTGCCCTTTTTACAACAATGAttttttt---ttttttttttttttttgagatgaagtctcactcttgttgcccaggctggagtgcaat----ggtgctatctgggctcactgcaacctcca------------------tctcctgcctcaacctcccgagtagctgggattacaggcgcccatcaacacgcccggctaatttttgtatttttggtagaggc-ggggtttcaccatgttggccaggctggtcttgaacccctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagcaaccacacccagcctggattttgacaaatgtatagaatcatatatccactaccctagtaccatctacaacagttccttcatcctaaaaatttccctttgaatgttctttatcccttctccctccaacctttgataaccattaacctgttttctatccccatagatctgctttttccagaatggtatatgaattgagtcagataaaatgaagccttttgtgtctgacatttttttcacctagtaaaacgcatttaagattaattcatgtatggattaatagcttattTACATATATATATATA------------TAt-----ttttttttttt
i gorGor5.CYUI01015250v1   I 187 C 0
s rheMac8.chr4             30152899 633 + 172585720 AGAAAAATCTGTAGAAAAGCCTGTGCCCTTTTTACAACAGTGAC--tttc----tttttttctttttttgagatgaagtctcgctcttgtcacccaggctggggtgcaat----ggtgccatctgggctcactgcaacttctgtctccaggttcaagcaattctcctgcctcaacctcccaagtagctgggattacaggcacccaccaacacgcccagctaagttttgtattttcagtaaaggc-agggtttcaccatgttggccagactggtcttgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattgcaggcatgagccaccacatccagcctggattttgacaaatgtgtagaattgtacatccacgaccctagtaccacatacaacagttccttcatcctaaaaatttccctttgaatgttctttatcccttctccctccaacctttgataaccattaacctgttttctgtccccatagatctgctttttccagaatggtatatggattgagtcagataaaatgaagccttttgtgtctgacatttttttcacctagtaaaatgcatttaagattaattgatgtatggattaatagcttattTACATGTATACATATA-------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29816351 633 - 170955103 AGAAAAATCTGTAGAAAAGCCTGTGCCCTTTTTACAACAGTGAC--tttc----tttttttctttttttgagatgaagtctcgctcttgtcacccaggctggggtgcaat----ggtgccatctgggctcactgcaacttctgtctccaggttcaagcaattctcctgcctcaacctcccaagtagctgggattacaggcacccaccaacacgcccagctaagttttgtattttcagtaaaggc-agggtttcactacgttggccagactggtcttgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattgcaggcatgagccaccacatccagcctggattttgacaaatgtgtagaattgtacatccacgaccctagtaccacatacaacagttccttcatcctaaaaatttccctttgaatgttctttatcccttctccctccaacctttgataaccattaacctgttttctgtccccatagatctgctttttccagaatggtatatggattgagtcagataaaatgaagccttttgtgtctgacatttttttcacctagtaaaatgcatttaagattaattgatgtatggattaatagcttattTACATGTATACATATA-------------------------------
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29069832 648 -  71996105 AGAAAAATCTGTAGAAAAGCCTGTGCCCTTTTTACAACAGGGAC--tttctt-ttttttttttttttttgagatgaagtctcgctcttgtcgcccagactggagtgcaat----ggtgccatctgggctcactgcaacttctgcctccaggttcaagcaattctcctgcctcaacctcccgagtagctgggattacaggcacccaccaacacgcccagctaagttttgtattttcagtaaaggc-agggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccacctgcctcggcctcccaaagtgctgggattacaggcatgagccaccacatccagcctggattttgacaaatgtgtagaatcgtatatccacgaccctagtaccatatacaacagttccttcatcctaaaaatttccctttgaatgttctttatcccttcttcctccaacctttgataaccattaacctgttttctgcccccatagatctgctttttccagaatggtatatgaattgattcagataaaatgaagccttttgtgtctgacatttttttcacctagtaaaatgcatttaagattaattgatgtatggattaatagcttattTACATATATATATAtttttttttttttt-------------------
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2722699 640 -   3067355 AGAAAAATCTGTAGAAAAGCCTGTaccctttttacaacagtgac--tttcttcttctttttttttttttgagaagaaatctcgttcttgtcacccaggctggagtgcaatggcgggcgccatctgggctcactgcaacttctgcctccaggttcaagcgattctcctgcctcatcctcccaagtagctggaattataggcgcccaccaacacgcctggttaagtttcgtattttcagtaaaggc-agtgtttcaccatgctggccaggctggtcttgaactcctgacctcaggtgatccacccgccttggcttcccaaagtgctgggattacaggcatgagccaccacacccagcctggattttgacaaatgtatagaatcgtatatccacgaccctagtaccatatacaacagttccttcatcctaaaaatttccctttgaatgttctttatcccttctccctccaacctttgataaccattaacctgttttatgtccccattgatctgctttttccagaatggtatatgaattgagtcagataaaatgaagccttttgtgtctgacatttttttcacctagtaaaatgcatttaagattaattgatgtatggattaatagcttattTACATATATAAATAt--------------------------------
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      80793 12582 +    132061 I
e manLeu1.NW_012099233v1     283464 6405 +    290775 I
e cerAty1.NW_012002711v1     610907 3838 +    766320 I
e macNem1.NW_012011356v1    2865811 702 -   2996164 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=122024.000000
s hg38.chr6_GL000254v2_alt   963884 42 +   4827813 tttttgaggcagagttttgcccttgttgcccaggctggagtg
s panTro5.chr6             29926641 42 + 175400573 tttttgagacagagttttgcctttgttgcccaggctggagtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30160112 42 + 173848474 ttttgtagacagagttttgcctttgttgcccaggctggagtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5960274 42 +   6154872 tttttgagacagagttttgcccttgttgaccaggctggagtg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30153532 42 + 172585720 tttttgagacagagttttgctcttgttgcccaggctggagtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29816984 42 - 170955103 tttttgagacagagttttgctcttgttgcccaggctggagtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2866513 41 -   2996164 tttttgagacggagtcttgctc-tgtcgcccgggctggagtg
i macNem1.NW_012011356v1   I 702 C 0
s chlSab2.chr17            29070480 42 -  71996105 tttttgaggcagagttttgctcttgttgcctaggctggagtg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2723339 40 -   3067355 --tttgagacagagttttgctcttgttgcccaggctggagtg
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      80793 12582 +    132061 I
e manLeu1.NW_012099233v1     283464 6405 +    290775 I
e cerAty1.NW_012002711v1     610907 3838 +    766320 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=900999.000000
s hg38.chr6_GL000254v2_alt   963926 251 +   4827813 caatggcgcgatattagctcgctgcaacctctgcctcccaggttcaaatg--attcttctgcttcagcttcctgagtagctgggattacaggcatgcgccaccactcccggctaattttgta---tttttagtagagacggggtttcttcatgttggccaggcttgtctcgaactcctgacctcaggtgatccacatgcctcggcctcccagagtgctgggattacaggtgtgagccactgcgcctggccAAtttg
s panTro5.chr6             29926683 251 + 175400573 caatggtgcgatattagctcactgcaacctccgcctcccaggttcaaatg--attcttctacctcagcttcctgagtagctgggattacaggcatgcaccgccactcccggctaattttgta---tttttagtagagacggggtttcttcatgttggccaggctggtctcgaactcctgacctcaggtgatccacatgcctcggcctcccagagtgctgggattacaggtgtgagccactgcgcccggccAttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30160154 251 + 173848474 caatggtgtgatattagctcactgcaacctccgcctcccaggttcaaatg--attcttctacctcagcttcctgagtagctgggattacaggcatgcaccgccactcccggctaattttgta---tttttagtagagacggggtttcttcatgttggccaggctggtctcgaactcctgacctcaggtgatccacatgcctcggcctcccagagtgctgggattacaggtgtgagccactgcgcccggccATTTTT
i panPan2.chr6             C 0 I 152
s gorGor5.CYUI01015250v1    5960316 251 +   6154872 caatggcacgatattagctcactgcaacctccgcctcccaggttcaaatg--attcttctgcttcagcttcctgagtagctgggattacaggcatgcgccaccactcccggctaattttgta---tttttagtagagatggggtttcttcatgttggccaggctggtctcgaactcctgacctcaggtgatccacatgcctcggcctcccagagtgctgggattacaggtgtgagccactgcgcccggccAAtttt
i gorGor5.CYUI01015250v1   C 0 I 1
s rheMac8.chr4             30153574 251 + 172585720 caatggtgcgatattggctcactgcaacctctgcctcccaggttcaagtg--attctcctgcctcagctccctgactagctgggattacaggaatgcgccaccactcccggctaattttgta---tttttagtagatacggggtttcttcatgttgaccaggctggtctcgaactcctgacctcaggtgatccacatgcctcagcctcccagagtgctgggattacaggcatgagccactgtgcccagGCTATTTT
i rheMac8.chr4             C 0 I 13
s macFas5.chr4             29817026 251 - 170955103 caatggtgcgatattggctcactgcaacctctgcctcccaggttcaagtg--attctcctgcctcagctccctgactagctgggattacaggaatgcgccaccactcccggctaattttgta---tttttagtagatacggggtttcttcatgttgaccaggctggtctcgaactcctgacctcaggtgatccacatgcctcagcctcccagagtgctgggattacaggcatgagccactgtgcccagccTATTTT
i macFas5.chr4             C 0 I 13
s macNem1.NW_012011356v1    2866554 247 -   2996164 cagtggccggatctcagctcactgcaagctccgcctcccgggtttacttgccattctcttgcctcaggctcctgagtagctgggactacaggcgcccgccacctcgcccggctagttttttgtattttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctt--gtgatctgcccttctcagcctcccaaagtgctgggattacaggcttgagccaccacgcccggc-------
i macNem1.NW_012011356v1   C 0 I 4
s cerAty1.NW_012002711v1     614745 251 +    766320 caatggtgcgatattggctcactgcaacctctgcctcccaggttcaagtg--attctcctgcctcagctccctgagtagctgggattacaggaatgcgccaccactcccggctaattttgta---tttttagtagatacggggtttcttcatgttgaccaggctggtgtcgaactcctgacctcaggtgatccacatgcctcagcctcgcagagtgctgggattacaggcatgagccactgtgcccagccTATTTT
i cerAty1.NW_012002711v1   I 3838 I 12
s chlSab2.chr17            29070522 251 -  71996105 caatggtgcactgttggctcactgcaacctctgcctcccaggttcaagtg--attctcctgcctcagctccctgagtagctgggattacaggaatgcaccaccacttccggctaattttgta---tttttagtagatacggggtttcttcatgttgaccaggctagtctcgaactcctgacctcaggtgatccacatgcctcagcctcccagagtgctgggattacaggcatgagccactgtgcccagccTATTTT
i chlSab2.chr17            C 0 I 13
s colAng1.NW_012115566v1    2723379 251 -   3067355 caatggcacgatgttggctcactgcaacctccgcctcccaggttcaagtg--attctcctgcctcagctccctgagtagctgggattacaggcatgtgccaccactcccggctaattttgta---tttttagtagagacggggtttcttcatgttggtcaaactggtctcaaactcctgacctcaggtgatccacatgcctcagtctcccagagtgctgggattacaggcatgagccactgcgcccgAtctatttt
i colAng1.NW_012115566v1   C 0 I 38
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      80793 12582 +    132061 I
e manLeu1.NW_012099233v1     283464 6405 +    290775 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=4624724.000000
s hg38.chr6_GL000254v2_alt   964177 1248 +   4827813 tttttttttttaaataaacatagacagcatctcggtatgttgcccagactggtcttgaaccctggccacaat-cgatccttccaccttggcctcccaaaatgAGCCACTGCACCAGGGC---AACAGC-----tt---------------------ttt----------------ttttttttttagacagatccttgctctgttgcccagactagagtgcaatgatgcagtcttggctcactccaacctctgcctcccaggttcaagtgattctcctgcctcagcctcccgaggagctgggactacagttgctcgccaccacgcctagctaattttttctttttgtatttttactagagacggagttttgccatgttgcccaggctggtc---------------------tcaaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctgggattacaggtgtaagccacctcatctggccTGACAatagctcatttcttatgatccatatggttataccacagtttgcttagtcttgcatggctgaaagatatcttggttgtttacagtttttagtgaacatatgtaaagctgctataaatattcatgtacaggtttttgtgtggatatcaaccttgaattaacttgggtaaatacctaagagcatgattgatggtaagtctctccttaactttataagaaacttctaaactgtctttcaaagtggctttaccgttttccattcccattagcagtgagtgggaattcttgttgctctgtatattttcagcattttttattgtaagtttaaaaaattttagctactctaatagtgtagcagtactttgttttggtgttctgttttgttttgtttt-----ttgagacagagtctcactctgttgcccaggctggagtaaagtggtgcgatcacagctcacttcagtctccacctcccaggttcaagcaatcctcccgtctcactctcccaagtggctggaatcactggcgcatgccaccacacctggttaatgtttgtttgtttgtttgtttgtttgttgagacattgtctcgccatgttacccaggctggtcttgagctcctgggctcaagtgatccttctgccttagcctaccaaagtgttggcattgaaggcatgagccactgcaccctgttggcatttccctaatgacagatgatcttaagcatattttcaagtattatttaccacccatatatcttctttgg-tggtgtctgttgagatctttcacccacttctaaaatcaagatttttttccccaattattg
s panTro5.chr6             29926934 1245 + 175400573 tttttttttttaaataaacatagacagcatctcggtatgttgcccagactggtcttga-ccctggccacaacacgatccttccaccttggcctcccaaaatgAGCCACTGCACCAGGGC---AACAGC-----Ct---------------------ttt----------------ttttttttttagacagatccttgctctgttgcccagactagagtgcaatgatgcagtcttggctcactccaacctctgcctcccaggttcaagtgattctcctgcctcagcctcccgaggagctgggactacagttgctcgccaccacgcctggctaattttttctttttgtatttttactagagacggagttttgccatgttgcccaggctggtc---------------------tcaaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctgggattacaggtgtaagccacctcatctggccTGACAACAGCTCATTTCTTATGATCCAtatggttataccacagtttgcttagtcttgcatggctgaaagatatcttggttgtttacagtttttagtgaacatatgtaaagctgctataaatattcatgtataggtttttgtgtggatatcaaccttgaattaacttgggtaaatccctaagagcacgattgatggtacgtctctccttaactttataagaaacttctaaactgtctttcaaagtggctttaccattttccattcccattagcagtgagtgggaattcttgttgctctgtatattttcagcattttttattgtaagtttgaaaaattttagctactctaatagtgtagcagtactttgttttggtgttttgttttgttttgttttgtgttttgagacagagtctcactctgttgcccaggctggagtaaagtggtgcgatcacagctcacttcagcctccacctcccaggttcaagcaatcctcccgtctcaccctcccaagtagctggaatcactggcgcatgccactacacctggttaatgtttgtttgtttgtttgta--------gagacattgtctcgccatgttacccaggctggtcttgagctcctgggctcaagtgatccttctgccttagcctaccgaagtgttggcattgcaggcatgagccactgcaccctattggcatttccctaatgacagatgatcttaagcatattttcaagtattatttaccacccatatatcttctttgg-tggtgtctgttgagatctttcacccacttctaaaatcaagattttttttcccaattattg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30160557 1237 + 173848474 tttttttttttaaataaagatagacagcatctcggtatgttgcccagactggtcttgaaccctggccacaag-cgatccttccaccttggcctcccaaaatgAGCCACTGCACCAGGGC---AACAGC------t---------------------ttt----------------ttttttttttagacagatccttgctctgttgcccagactagagtgcaatgatgcagtcttggctcactccaacctctgcctcccaggttcaagtgattctcctgcctcagcctcccgaggagctgggactacagttgctcgccaccacgcctggctaa-tttttctttttgtatttttactagagacggagttttgccatgttgcccaggctggtc---------------------tcaaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctgggattacaggtgtaagccacctcatctggccTGACAACAGCTCATTTCTTATGATCCAtatggttataccacagtttgcttagtcttgcatggctgaaagatatcttggttgtttacagtttttagtgaacatatgtaaagctgctataaatattcatgtataggtttttgtgtggatatcaaccttgaattaacttgggtaaatccctaagagcacgattgatggtacgtctctccttaactttataagaaacttctaaactgtctttcaaagtggctttaccattttccattcccattagcagtgagtgggaattcttgttgctctgtatattttcagcattttttattgtaagtttgaaaaattttagctactctaatagtgtagcagtactttgttttggtgttttgttttgttttgtgtt-----ttgagacagagtctcactctgttgcccaggctggagtaaagtggtgcgatcacagctcacttcagcctccacctcccaggttcaagcaatcctcccgtctcaccctcccaagtagctggaatcactggcgcatgccactacacctggttaatgtttgtttgtttgtttgta--------gagacattgtctcgccatgttacccaggctggtcttgagctcctgggctcaagtgatccttctgccttagcctaccgaagtgttggcattgcaggcatgagccactgcaccctattggcatttccctaatgacagatgatcttaagcatattttcaagtattatttaccacccatatatcttctttgg-tggtgtctgttgagatctttcacccacttctaaaatcaagattttttt-cccaattattg
i panPan2.chr6             I 152 C 0
s gorGor5.CYUI01015250v1    5960568 1242 +   6154872 tttttttttttaaataaacatagacagcatctcggtattttgcccagactggtcttgaaccctggccacaag-cgatccttccaccttggcctcccaaaatgAGCCACTGCACTGGGGC---AACAGCttt--tt---------------------ttt----------------ttttttttttaagacgatccttgctctgttgcccagactagagtgcaaagatgcagtctcggctcactccaacctctgcctcccaggttcaagtgatactcctgcctcagcctcccgaggagttgggactacagttgctcgccaccacgcctggctaattttttctttttgtatttttactagagacggagttttgccatgttgcccaggctggtc---------------------tccaactcctgacctcaggtgatccacctgccttagcctcccaaagtgctgggattacaggtgtaagccacctcatctggccTGACAatagctcatttcttatgatccatatggttataccacagtttgcttagtattgcatggctgaaagatatcttggttgttcacagtttttagtgaacatatgtaaagctgctataaatattcatgtacaggtttttgtgtggatatcaaccttgaattaacttgggtaaatacctaagagcatgattgatggtaagtctctccttaactttataagaaacttctaaactgtctttcaaagtggctttaccattttccattcccattagcagtgagtgggaattcttgttgctctgtatattttcagcattttttattgtaagtttaaaaaattttagctactctaatagtgtagcagtactttgttttgatgttttgttttgttttgtgtt-----ttgagacagagtctcactctgttgcccaggctggagtaaagtggtgcgatcacagctcacttcagcctccacctcccaggttcaagcaatcctcccgtctcaccctcccaagtagctggaatcactggcgcatgccactacacctggttaatgtttgtttgtttgtttgta--------gagacattgtcttgccatgttacccaggctggtcttgagctcctgggctcaagtgatccttctgccttagcctaccaaagtgttggcattgaaggcatgagccactgcaccctgttggcatttccctaatgacagatgatcttaagcatattttcaagtattatttaccacccatatatcttctttgg-tggtatctgttgagatctttcacccacttctaaaatcaagattttttt-cccaattattg
i gorGor5.CYUI01015250v1   I 1 C 0
s rheMac8.chr4             30153838 1254 + 172585720 tttttttttttaaataaacat----agcatcttggtatattgccccgactgatcttgaaccctggccacaag-tgatcctttcaccttggcctcccaaaatgAGCCACTGCACCAGGGCAATAATAGCCtttgtttttttttgtttgtttgtttgtttt----------------ttgttttttgagacaaagtctcactctgttgcccaggctggagtgcaatgatacaatctctgctcactgcgacctctgcctcccaggttcaagtgattctcctgcctcagcctcccgaggaactgggattacagttgctcgccaccacgcctggctaatattttctttttgtatttttactagagatgtagttttgccatgttgcccaggctggtc---------------------tcaaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctaggattacaggttca---caccacgtccggccTGACAatagctcatttcttatgatccatatggttatgccacagtttgcttagtcttgcatggctgaaagatagcttggttgtttacagtttttaatgaacatatgtaaaactgctataaatattcatgaacaggtttttgtgtggatatcaaccttgaattaacttgggtaaatatctaagagcacgattgatggtaagtctctccttaactttataagaaacttctaaactgtctttcaaagtggcttgaccattttccattcccattagcagtgagtgggaatttttgttgctctgtatattttcagcattttttattgtaagtttaaaaatttttagctattctaatagtgtagtaatactttgttgtggtgttttgttttgtttt----------ttgaa--agagtctcgctctgttgcccaggctggattaaagtggtgtgatcacagctcacttcagcctccacctcccaggttcaagcagttctcctgtctcaccctcccaagtagctggaatcacaggcgcatgccaccacacctggttaatgtttgtttgtttgttcata--------gatacattgtctcgtcatgttacccatgctggtctc-agctcctgggctcaagtgatccttccgcctcagcctaccaaagtgttagcattgcagacatgagccactgcagcctattggcatttccctaatgacagatgatcttaagcatattttcatgtattttttaccacccatatatcttctttggagggtgtctgttgagatctttcacccacttctaaaatcaagattttttc-ctcaatgattg
i rheMac8.chr4             I 13 I 310
s macFas5.chr4             29817290 1253 - 170955103 tttttttttttaaataaacat----agcatcttggtatattgccccgactgatcttgaaccctggccacaag-tgatcctttcaccttggcctcccaaaatgAGCCACTGCACCAGGGCAATAATAGCCtttgtt-ttgtttgtttgtttgtttgtttt----------------ttgttttttgagacaaagtctcactctgttgcccaggctggagtgcaatgatacaatctctgctcactgcgacctctgcctcccaggttcaagtgattctcctgcctcagcctcccgaggaactgggattacagttgctcgccaccacgcctggctaatattttctttttgtatttttactagagatggagttttgccatgttgcccaggctggtc---------------------tcaaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctaggattacaggttca---caccacgtccggccTGACAatagctcatttcttatgatccatatggttatgccacagtttgcttagtcttgcatggctgaaagatagcttggttgtttacagtttttaatgaacatatgtaaagctgctataaatattcatgaacaggtttttgtgtggatatcaaccttgaattaacttgggtaaatatctaagagcacgattgatggtaagtctctccttaactttataagaaacttctaaactgtctttcaaagtggcttgaccattttccattcccattagcagtgagtgggaatttttgttgctctgtatattttcagcattttttattgtaagtttaaaaatttttagctattctaatagtgtagtaatactttgttgtggtgttttgttttgtttt----------ttgaa--agagtctcgctctgttgcccaggctggattaaagtggtgtgatcacagctcacttcagcctccacctcccaggttcaagcagttctcctgtctcaccctcccaagtagctggaatcacaggcgcatgccaccacacctggttaatgtttgtttgtttgttcgta--------gatacattgtctcgtcatgttacccatgctggtctc-agctcctgggctcaagtgatccttccgcctcagcctaccaaagtgttagcattgcagacatgagccactgcagcctattggcatttccctaatgacagatgatcttaagcatattttcatgtattttttaccacccatatatcttctttggagggtgtctgttgagatctttcacccacttctaaaatcaagattttttc-ctcaatgattg
i macFas5.chr4             I 13 I 310
s macNem1.NW_012011356v1    2866805 1234 -   2996164 tttttttttttaaataaacat----agcatcttggtatgttgccccgactgatcttgaaccctggccacaag-tgatccttccaccttggcctcccaaaACGAGCCACTGCACCAGGGC---AATAGCCtttatt------------tctttttttttt----------------tttttttttgagacaaagtctcactctgttgcccaggctggagtgcaatgatacagtctcggctcactgccacctctacctcccaggttcaagtgattctcctgcctcagcctcccgaggaactaggattacagttgctcgccaccacgcctggctaattttttctttttgtatttttactagagatggagttttgccatgttgcccaggctggtc---------------------tcaaactcctgacctcaggtgatccacctgcctcagcctccaaaagtgctaggattacaggttca---caccacgtccggccTGACAatagctcatttcttatgatccatatggttatgccacagtttgcttagtcttgcatggctgaaagacatcttggttgtttacagtttttaatgaacatatgtaaagctgctataaatattcatgaacaggtttttgtgtggatatcaaccttgaattaacttgggtaaatatccaagagcacgattgatggtaagtctctccttaactttgtaagaaacttctaaactgtctttcaaagtggcttgaccattttccattcccattagcagtgagtgggaattcttgttgctctgtgtattttcagcattttttattgtaagtttaaaaatttttagctattctaatagtgtagtaatactttgttgtgg-----tgttttgtttt----------ttgaaacagagtcttgctctgttgcccaggctggattaaagtggtgcgatcacagctcacttcagcctccacctcccaggttcaagcagttctcccgtctcaccctcccaagtagctggaatcacaggcgcatgccaccacacctggttaatgtttgtttgtttgtttgta--------gatacattgtctcgccatgttacccatgctggtctc-agctcctgggctcaagtgatccttccgcctcagcctaccaaagtgttggcattgcaggcatgagccactgcagcctattggcgtttccctaatgacagatgatcttaagcatattttcatgtattatttaccactcatatatcttctttgg-tggtgtctgttgagatctttcacccacttctaaaatcaaga-attttc-ctcaattattg
i macNem1.NW_012011356v1   I 4 C 0
s cerAty1.NW_012002711v1     615008 1276 +    766320 ---TTttttttaaataaacat----agcatcttggtatgttgccccgactgatcttgaaccctggccacaag-tgatccttccaccttggcctcccaaaAAGGGGCACTGCACCAGGGC---AATAGCCtttgtt--tttttgtttgtttgtttgttttgttttgttttgttttgttttgttttgagacaaagtctcactctgttgcccaggctggagtgcaatgatacagtctcagctcactgagacctctgcctcccaggttcaagtgattctcctgcctcagcctcccgaggaactgggattacagt-------caccacgcctggctaattttttctttttgtatttttactagagatggagttttgccatgttgcccaggctggtcttcatgttgaccaggctggtgtcgaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctaggattacaggttca---caccacgtccggccTGACAatagctcatttcttatgatccatatggttatgccacagtttgcttagtcttgcatggctgaaagatagcttggttgtttacagtctttaatgaacatatgtaaagctgctataaatattcatgaacaggtttttgtgttgatatcaaccttgaattaacttgggtaaatatctaagagcacgactgatggtaagtctctccttaactttataagaaacttctaaactgtctttccaagtggcttgaccattttccatttccattagcagtgagtgggaattcttgttgctctgtatattttcagcattttttattgtaagtttaaaattttttagctattctaatagtgtagtaatactttgttgtggtgttttgttttgtttt----------tttaaacagagtcttgctctgttgcccaggctggattaaagtggtgcgatcacagctcacttcagcctccacctcccaggttcaagcagttctcccatctcaccctcccaagtagctggaatcacaggcgcatgccaccacatctggttaatgtttgtttgtttgtttgta--------gatacattctctcgccatgttacccatgctggtctc-agctcctgggctcaagcgatccttccgcctcagcctaccaaagtgttggcattgcagacatgagccactgcagcctattggcatttccctaatgacagatgatcttaagcatattttcatgtattatttaccacccatatatcttctttgg-tggtgtctgttgagatctttcacccacttctaaaatcaaga-attttc-ctcaattattg
i cerAty1.NW_012002711v1   I 12 C 0
s chlSab2.chr17            29070786 1243 -  71996105 tttcttttttaaaataaacat----agcatcttggtatgttgccccaactgatcttgaaccctggccacaag-tgatccttccaccttggcctcccaaaatgAGCCACTGCACCAGGGC---AATAGCCtttgtt----------tttttttttttgtt----------------ttttgttttgagacaaagtctcactctgttgcccaggctggagtgcaatgatacagtctcggctcattgcgacctctgcctcccaggttcaagtgattctcctgcctcagcctcccgaggaactgggattacagttgctcgccaccacacgtggctaattttctctttttgtatttttaccagagatagagttttgccatgttgcccaggctggtc---------------------tgaaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctaggattacaggttca---caccacgtccggccTGATAATAGCTCATTTCTTATGATCCAtatggttatgccacagtttgcttagtcttgcatggctgaaagatagcttggttgtttacagttttaaatgaacatatgtaaagctgctataaatattcatgaacaggtttttgtgttaatatcaaccttgaattaacttgggtaaatatctaagagcatgattgatggtaagtctctccttaactttataagaaacttccaagctgtctttcaaagtggctttaccattttccattcccattagcagtcagtgggaatttttgttgctctgtatattttcagcattttttattgtaagtttaaaaatttttagctattctaatagtgtagtagtactttgttgtggtgttttgttttgtttt----------ttaaaacagagtctcgctctgttgcccaggctggattaaagtggtgcgatcacagctcacttcagcctccacctctcaggttcaagcagttctcctgtctcaccctcccaagtagcgggaatcacaggcgcatgccaccacatctggttaatgtttgtttgtttgtttgta--------gatacattgtctcgccatgttacccatgctggtctc-agctcctgggctcaagtgatgcttccgcctcagcctaccaaagtgttggcattgcaggcatgagccacggcagcctattggcatttccctaatgacagatgatcttaagcatattttcatgtattttttaccactcatatatcttctttggagggtgtctgttgagatctttcacccacttctaaaatcaagtttttttc-ctcaatgattg
i chlSab2.chr17            I 13 C 0
s colAng1.NW_012115566v1    2723668 1231 -   3067355 TTTCttttttaaaataaacat----agcatcttggtatgttgcccagactggtcttgaaccctggccacaaa-tgatccttccaccttggcctcccaaattgAGCCCCTGCACCAGGGC---AATAGCttttttt---------------------ttt----------------tttttttttaagacaaagtctcactctgttgcccaggctggagtgcaatgatgcagtctcagctcactgcgacctctgcctcccatgttcaagtgattctcctgcctcagcctcccgaggaactgggattgcagttgctcgccaccatgcctggctaattttttctttttgtatttttactagagatggagttttgccatgttgcccaggctggtc---------------------tcaaactcctgacctcagatgatccacctgcctcagcctcccaaagtgctaggattacaggTTCA---CACCACATCCGGTCTGACAatagttcatttcttatgatccatatggttatgccacagtttgcttagtcttgcatggctaaaagagatcttggttgtttacagtttttaatgaacacatgtaaagctgctataaatactcatgaacaggtttttgtgtggatatcaaccttgaattaacttgggtaaatatctaagagcacgattgatggtaagtctctccttaactttataagaaacttctaaactgtctttcaaagtggcttgaccattttccattcccattagcagtgagtgggaattttttttgctctgtatattttcagcattttttattgtaagtttaaaaatttttagctattctaataatgtagtagtactttgttgtggtgttttgttttgtttt----------ttgaaacagagtctcactctgttgcccaggctggattaaagtggtgcgatcacagttcacttcagcctccacctcccaggttcaagcagttctcccgtctcaccctcccaagtagctggaatcacaggcgcatgccaccacatccggttaatgtgtgtttgtttgtttgta--------gatacattgtctcgccatgttacccatgctggtctc-agctcctgggctcaagtgatccttccgcctcagcctaccaaagtgttggcattgcaggcatgagccactgcagcctattggcatttccctaatgacagatgatcttaaccatattttcatgtattatttaccacccatatatcttctttgg-tggtatctgttgagatctttcacctactcctaaaatcaagatttttcc-ctcaattatag
i colAng1.NW_012115566v1   I 38 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      80793 12582 +    132061 I
e manLeu1.NW_012099233v1     283464 6405 +    290775 I
e nomLeu3.chr1a            74667414  766 + 122973662 I

a score=2067814.000000
s hg38.chr6_GL000254v2_alt   965425 568 +   4827813 tgttttaattttgttcacatattatctttacaagtcctttgtcacatctataacttccagttttttgacaagtattttcttccagtctgtgccttgtcttcttttcattcacttaccagtg-tttttgtaaagcaaaaactattaattatgataaagtctaattgatttgttttctctttcatggattgtatttttggtgttttatctaaaaactcaaactcaaggttaagattttctcctttatattcttccagaagttttatggctgtgcatattatttttaagtctatgatacattttgagttacttttttataggtgtg-aagtattgtcaag-----tttttttttttttttttt-tttttttGTGATTgagtcttactctgtggcccaggc----tggagtgcaatggcgtgatctctgctcactgcaacctctgcctcccaggttcaagtgattcttctacctcagcctcccgagtagctgggattacaggcatgagccaccacaccagctaatttttgtaactttagtagaggcagggtttcaccatgttggccaagccagtctcaaactcc
s panTro5.chr6             29928179 569 + 175400573 tgttttaattttgttcacatattatctttacgagtcctttgtcacatctataacttccagttttttgacaagtattttcttccagtctgtgccttgtcttcttttcattcacttaccagtg-tttttgtaaagcaaaaactattaattatgataaagtctaattgatttgttttctctttcatggattgtatttttggtgttttatctaaaaactcaaactcaaggttaagattttctcctttatattcttccagaagttttatggctgtgcatattatttttaagtctatgatacattttgagttacttttttataggtgtg-aagtattgtcaag-----ttttttttgttttgttttgtttttttgagattgagtcttactctgtggcccaggc----tggagtgcaattgcatgatctctgctcactgcaacctctgcctcccaggttcaagtgattcttctacctcagcctcccgagtagctgggattacaggcaagagccaccacaccagctaatttttgtacctttagtagaggcagggtttcaccatgttggccaagccagtctcaaactct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30161794 566 + 173848474 tgttttaattttgttcacatattatctttacgagtcctttgtcacatctataacttccagttttttgacaagtattttcttccagtctgtgccttgtcttcttttcattcacttaccagtg-tttttgtaaagcaaaaactattaattatgataaagtctaattgatttgttttctctttcatggattgtatttttggtgttttatctaaaaactcaaactcaaggttaagattttctcctttatattcttccagaagttttatggctgtgcatattatttttaagtctatgatacatttt--gttacttttttataggtgtg-aagtattgtcaag------tttttttgttttgttttgtttttttgagattgagtcttactctgtggcccaggc----tggagtgcaatggcatgatctctgctcactgcaacctctgcctcccaggttcaagtgattcttctacctcagcctcccgagtagctgggattacaggcaagagccaccacaccagctaatttttgtacctttagtagaggcagggtttcaccatgttggccaagccagtctcaaactct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5961810 563 +   6154872 tgttttaattttgttcacatattatctttacaagtcctttgtcacatctataacttccagttttttgacaagtattttcttccagtctgtgccttgtcttcttttcattcacttaccagtg-tttttgtaaagcaaaaactattaattatgataaagtctaattgacttgttttctctttcatggattgtatttttggtgttttatctaaaaactcaaactcaaggttaagattttctcctttatattcttccagaagttttatggctgtgcatattatttttaagtctatgatacattttgagttacttttttataggtgtg-aagtattgtcaag-----ttttttttttttt------tttttttgagattgagtcttactctgtggcccaggc----tggagtgcaatggcgtgatctctgctcactgcaacctctgcctcccaggttcaagtgattcttctacctcagcctcccgagtagctgggattacaggcatgagccaccacaccagctaatttttgtaactttagtagaggcagggtttcaccatgttggccaagccagtctcaaactcc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30155402 554 + 172585720 tgttttaattttatttacatattgtctttacaagtcctttgtcacatctgtaacttccagttttttgacaggtagtttcttccagtctgtgccttg---tcttttcattcacttaccagca-tttttgtaaagcaagagctattaattatgataaagtctaattgatttgttttctctttcatggattgtacttttggtgttttatct------tcaaactcaaggttaagactttctcctttatattcttctataagttttatggctgtacatattatttttagatctatgatacattttgagttacttttttataggtgtg-aagtattgtcaag---------atttttttt------tttttttgagatggagtcttgctgtgttgcccaggctggatggagtgcaatggcgtgatcttggctcgctgcaaactctgcctcccaggttcaagtgattcttctacctcagcctcccaagtagctgggattacaggcatgagccaccacaccaaatagtttttgtacctttagtagaggaaggatttcaccatgttggccaagctggtctcaaactcc
i rheMac8.chr4             I 310 C 0
s macFas5.chr4             29818853 553 - 170955103 tgttttaattttatttacatattgtctttacaagtcctttgtcacatctgtaacttccagttttttgacaggtagtttcttccagtctgtgccttg---tcttttcattcacttaccagca-tttttgtaaagcaagagctattaattatgataaagtctaattgatttgttttctctttcatggattgtacttttggtgttttatct------tcaaactcaaggttaagactttctcctttatattcttctagaagttttatggctgtacatattatttttagatctatgatacattttgagttacttttttataggtgtg-aagtattgtcaag----------attttttt------tttttttgagatggagtcttgctgtgttgcccaggctggatggagtgcaatggcgtgatcttggctcgctgcaaactctgcctcccaggttcaagtgattcttctacctcagcctcccaagtagctgggattacaggcatgagccaccacaccaaatagtttttgtacctttagtagaggaaggatttcaccatgttggccaagctggtctcaaactcc
i macFas5.chr4             I 310 C 0
s macNem1.NW_012011356v1    2868039 559 -   2996164 tgttttaattttatttacatattgtctttacgagtcctttgtcacatctgtaacttccagttttttgacaagtagtttcttccagtctgtgccttg---tcttttcattcacttaccagcg-tttttgtaaagcaagagctattgattatgataaagtctaattgatttgttttctctttcatggattgtactttttgtgttttatct------tcaaactcaaggttaagactttctcttttatattcttctagaaattttatggctgtacatattatttttagatctatgatacattttgagttacttttttataggtgtg-aagtattgttaagtttttttttttttttttt------ttttttttagatggagtcttgtcgtgttgcccaagt----tggagtgcaatggcgtgatcttggctcactgcaacctctgcctcccaggttcaagtgattcttctacctcagcctcccaagtagctgggattacaggcatgagccaccacaccagctagtttttgtgcctttagtagaggaagggtttcaccatgttggccaagctggtctcaaactct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     616284 548 +    766320 tgttttaattttatttacatattgtctttacgagtcctttgtcacatctgtaacttccagttttttgacaagtagtttcttccagtctgtgccttg---tcttttcattcacttaccagcg-tttttgtaaagcaggagctattgattatgataaagtctaattgatttgttttctctttcatggattgtacttttggtgttttatct------tcaaactcaaggttaagactttctcctttatatatttttagaagttttatggctgtacatat--tttttagatctatgacacattttgagttacttttttataggtgtgtgtgtattgtcaag----------attttttt------tttttttgagatggagtcttgctgtgttgcccaggc----tggagtgcaatggcgtgatcttggctcgctgcaacctctgcctcccagcttcaagtgattcttctacctcagcctcccaagtagctgggattacaggcatgagccaccacaccaactagtttttgtacctttagtagaggaagggtttcaccatgttggccaagctggtctcaaactcc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29072029 554 -  71996105 tgttttaattttatttacatattgtctttacaagtcctttgtcacatctataacttccagttttttgacaagtagtttcttccagtctgtgccttg---tcttttcattcacttaccagca-tttttgtaaagcaagagctattaattatgataaagtctaattgatttgttttctctttcatggattgtacttttggtgttttatct------tcaaactcaaggttaagactttctcctttatattcttctagaagttttatggctgtacatattatttttagatctatgatacattttgagttacttttttataggtgta-aagtattgtcaag-----atttttttttttt------tttttttgagatggagtcttgttgtgttgcccaggc----tggagtgcaatggcatgatcttggctcgctgcaacctctgcctcccaggttcaagtggttcttctacctcagcctcccaagtagctgggattacaggcatgagccaccacaccaactagtttttgtacctttagtagaggaagggtttcaccatgttggccaagctggtctcaaactcc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2724899 549 -   3067355 tgttttaattttatttacatattatctttacgagtcctttgtcacatctgtaacttccagttttttgacaagtagtttcttccagtctatgccttg---tcttttcattcacttaccagcgttttttgtaaagcaagagctattaattatgataaagtctaattgatttgttttctctttcatggattgtacttttggtgttttatct------tcaaatgcaaggttaagactttctcctttatattcttctagaagttttatggctgtacatattatttttagatctatgatacattttgagtcacgtttttatacgtgtg-aagtattgtcaag-----------atttttt------tttttttgagatggagtcttgctgtgttgcccggtt----tggagtgcaatggcatgatcttggctcgctgcaacctctgcctcccaggttcaagtgattcttctacctcagcctccgaagtagctgggattacaggcatgagccaccacaccagctagtttttgtgcctttagtagaggaagggtttcgccatgttggccaagctggtctcaaactct
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      80793 12582 +    132061 I
e manLeu1.NW_012099233v1     283464 6405 +    290775 I
e nomLeu3.chr1a            74667414 766 + 122973662 I

a score=4252690.000000
s hg38.chr6_GL000254v2_alt   965993 926 +   4827813 tgacctcaagtgatccacctgccccagcctcccaaagtagatggatgccaattgt----------------ttcagcatcattattgaaaggaga-ttcccttcttcattggatgacctttgtacttgtattcaaaatcaagtgactctatttttgtccttccatttctggcctctccattctgttctgttgatctatgtgtctgtccttttgccaataccacactctcttgatcactgtcctttgcagaaagactggaaatAgtatctaataattttgaaaggtatgttttcatcatcattcagttgaaaatattatctaacttcccttatgttttcttctttgatccgtaggttatttagaaggaagatttaaaattttcaatac----ttttttgcccctagacaacttattattgatttccaataaaatctattttggtcagagtacatattctgtatgatttcagtcctttgaaatatgttgttacttgttttatgtctcaacatatgacctgtgttagtgaatgtaccatattcactttacaaaatatatattctggagctgttgaacacagtgactgtaaatgtcagatcaagacggttgatagtgttgttcatttgtattttt-aaaaaactaagaaaaagctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaagacgtgtggatcacctcaggtcgggagttcgagaccagcctaaccaacgtggagaaaccacgtctctactaaaaatacaaaattagctgggcgtggtggtgcatgcctgtaatcccagctactcgggaggctgaggcaggataatcgcttgaacccaggaggcagaggttgcagtgagcggagattgtgccattgcactccagcctgggcaacaagaacgaaactccatctcaaaaaaaaattaat--aa---------aaa
s panTro5.chr6             29928748 926 + 175400573 tgacctcaagtgatccacctgccccagcctcccaaagtagatggatgccaattgt----------------ttcagcatcattattgaaaggaga-ttcccttcttcattggatgacctttgtacttgtattcaaaatcaagtgactctatttttgtccttccatttctggcctctccgttctgttctgttgatctatgtgtctgtccttttgccaataccacactctcttgatcactgtcctttgcagaaagactggaaatAgtatctaataattttgaaaggtatgttttcatcatcattcagttgaaaatattatctaacttcccttatgttttctcctttgatccgtaggttatttagaaggaagatttaaaattttcaatac----tcttttgcccctagacaacttattattgatttccaataaaatctattttggtcagagaacatattctgtatgatttcagtcctttgaaatatgttgtttcttgttttatgtctcaacatatgacctgtgttagtgaatgtaccatattcactttacaaaatatatattctggagttgttgaacacagtgactgtaaatgttagatcaagatggttgatagtgttgttcatttgtattttt-aaaaaactaagaaaaagctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaagatgtgtggatcacctcaggtcgggagttcgagaccagcctaaccaacatggagaaaccacgtctctactaaaaatacaaaattagctgggcgtggtggcgcatgcctgtaatcccacctactcgggaggctgaggcaggataatcgcttgaacccaggaggcagaggttgcagtgagcggagattgtgccattgcactccagcctgggcaacaagagcgaaactccatctcaaaaaaaaattaat--ac---------aaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30162360 926 + 173848474 tgacctcaagtgatccacatgccccagcctcccaaagtagatggatgccaattgt----------------ttcagcatcattattgaaaggaga-ttcccttcttcattggatgacctttgtacttgtattcaaaatcaagtgactctatttttgtccttccatttctggcctctccgttctgttctgttgatctatgtgtctgtccttttgccaataccacactctcttgatcactgtcctttgcagaaagactggaaatAgtatctaataattttgaaaggtatgttttcatcatcattcagttgaaaatattatctaacttcccttatgttttcttctttgatccgtaggttatttagaaggaagatttaaaattttcaatac----tcttttgcccctagacaacttattattgatttccaataaaatctattttggtcagagaacatattctgtatgatttcagtcctttgaaatatgttgtttcttgttttatgtctcaacatatgacctgtgttagtgaatgtaccatattcactttacaaaatatatattctggagttgttgaacacagtgactgtaaatgttagatcaagatggttgatagtgttgttcatttgtattttt-aaaaaactaagaaaaagctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaagatgtgtggatcacctcaggtcgggagttcgagaccagcctaaccaacatggagaaaccacgtctctactaaaaatacaaaattagctgggcgtggtggcgcatgcctgtaatcccacctactcgggaggctgaggcaggataatcgcttgaacccaggaggcagaggttgcagtgagcggagattgtgccattgcactccagcctgggcaacaagagcgaaactccatctcaaaaaaaaattaat--ac---------aaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5962373 928 +   6154872 tgacctcaagtgatccacctgccccagcctcccaaagtagatggatgccaattgt----------------ttcagcatcattattgaaaggaga-ttcccttcttcattggatgacctttgtacttgtattcaaaatcaagtgactctatttttgtccttccatatctggcctctccattctgttctgttgatctatgtgtctgtccttttgccaataccacactctcttgatcactgtcctttgcagaaagactggaaatAgtatctaataattttgaaaggtatgttttcatcatcattcagttgaaaatattatctaacttcccttatgttttcttctttgatccgtaggttatttagaaggaagatttaaaattttcaatac----ttttttgcccctagacaacttattattgatttccaataaaatctattttggtcagagaacatattctgtatgatttcagtcctttgaaatatgttgttacttgttttatgtctcaacatatgacctgtgttagtgaatgtaccatattcactttacaaaatatataatctggagttgttggacacagtgactgtaaatgtcagatcaagacggttgatagtgttgttcatttgtattttt-aaaaaactaagaaaaagctgggtgcggtggctcacgcctgtaatcccagcactttgggaggccaagacgtgtggatcacctcaggtcgggagttcgagaccagcctaaccaacatggagaaaccacgtctctactaaaaatacaaaattagctgggtgtggtggcgcatgcctgtaatcccagctactcaggaggctgaggcaggataatcgcttgaacccaggaggcagaggttgcagtgagcggagattgtgccattgcactccagcctgggcaacaagagcgaaactccatctcaaaaaaaaattaattaaa---------aaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74668180 927 + 122973662 tgaactca--tgatccacccgcctcggcctcccaaagtgctgggattacaagcgtgagccaccgcgcccggcTcagcatcattgttgaaaggaga-ttcccttcttcattggatgacctttgtacttttattcaaaatcaggtgactctatttttgtccttccatttctggcctctccattctgttcttttgctctatgtgtctgtccttttgccaataccacactctcttgatcactgtcctttgcagaaagactggaaatAGTATTTAATaattttgaaaggtatgttttcatcatcattcagttgaaaatattatctaacttcccttatgttttcttctttcatccagaggttatttagaaggaagatttaaaattttcaatac---tttttttgcccctagacaacttattattgatttctaataaaatctatttttgtcagagaacatattctgtatgatttcagtcctttgaaatatgttgttatttgttttatgtctcaacatatgacctatgttagtgaatgtaccatattcactttacaaaatatatattctggagttattgaacacagtgactgtaaatgtcagatcaagacagttgatagtgctgttcaTTTGCATTTTTAAAAAAACTAAGAAAAAGCTGGGTG-------------ctgtaatcccaacactttgggaggccaagacacatggatcacctcaggtcgggagttcgagaccagcctgaccaacatggagaaaccacgtctctactaaaaatacaaaattagctgggcgtggtggcgcatgcctgtaatcccagctactggggaggctgaagcaggagaatcacttgaacccaagaggcggaggttgcagtgagctgagattgca-cattgcactccagcct-ggcaacaagagcaaaactccatctcaaaaaaaaatttat--ta---------aaa
i nomLeu3.chr1a            I 766 C 0
s rheMac8.chr4             30155956 934 + 172585720 tgacctcaagtgatccacctgcctcagcctcccaaagtagatggatgccaattgt----------------ttcagcatcattgttgaaaggaga-ttcccttcttcattggatgacctttgtacttgtattcaaaatcaggtgactctatttttgtccttccatttctggcctctccgttctgttctgttgatctatgtatctgtccttttgccaataccacactctcttgatcactgtcctttgcagaaagactggaaatAgtatctcataattttgaaaggtacattttcatcatcatacagttgaaaacattgtctaacttcctttatgttttcttctttgatccataggttatttagaaggacgatttagaattttcaatac--ttttttttgcccctagacaacttattattgatttctaataaaatctattttggtcagagaacatattctgtatgatttcagtcctttgaaata---tgttatttgttttatgtctgaacatatgacctatgttagtgaatgtaccatattcactttacaaaatatatattctggagttgttgaatacagtgactgtaaatgtcagatcaagatggttgatagtgttgttcttttgtattttt-aAAAAACTAAGAAAAAgccaggcgtggtggctcacgcctgtaattccagcactttaggaggctgagatgcgcggatcacctgaggttgggagttcgagaccagtctgaccaacatggagaaaccacgtctctactaaaaatacaaaattaactaggcatagtggtgcatgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcagtgagctgagattgcgccatatcactccagcctgggcaacaagagtgaaactccatctcaaaaataaataaat--aaataaaattttaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29819406 934 - 170955103 tgacctcaagtgatccacctgcctcagcctcccaaagtagatggatgccaattgt----------------ttcagcatcattgttgaaaggaga-ttcccttcttcactggatgacctttgtacttgtattcaaaatcaggtgactctatttttgtccttccatttctggcctctccgttctgttctgttgatctatgtgtctgtccttttgccaataccacactctcttgatcactgtcctttgcagaaagactggaaatAgtatctcataattttgaaaggtacattttcatcatcatacagttgaaaacattgtctaacttcctttatgttttcttctttgatccataggttatttagaaggacgatttagaattttcaatac--ttttttttgcccctagacaacttattattgatttctaataaaatctattttggtcagagaacatattctgtatgatttcagtcctttgaaata---tgttatttgttttatgtctgaacatatgacctatgttagtgaatgtaccatattcactttacaaaatatatattctggagttgttgaatacagtgactgtaaatgtcagatcaagatggttgatagtgttgttcttttgtattttt-aaaaaactaagaaaaagccaggcgtggtggctcacgcctgtaattccagcactttaggaggctgagatgcgcggatcacctgaggttgggagttcgagaccagtctgaccaacatggagaaaccacgtctctactaaaaatacaaaattaactaggcatagtggtgcatgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcagtgagctgagattgcgccatatcactccagcctgggcaacaagagtgaaactccatctcaaaaataaataaat--aaataaaattttaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2868598 929 -   2996164 tgacctcaagtgatccacctgcctcagcctcccaaagtagatggatgccaattgt----------------ttcagcatcattgttgaaaggaga-ttcccttcttcattggatgacctttgtacttgtattcaaaatcaggtaactctatttttgtccttccatttctggcctctccattctattctgttgatctatgtgtctgtccttttgccaataccacactctcttgatcactatcctttgcagaaagactagaaatAgtatctcataattttgaaaggtatattttcgtcatcatacagttgaaaatattgtctaacttcccttatgttttcttctttgatccataggttatttagaaggatgatttagaattttcaatac--ttttttttgcccctagacaacttattattgatttctaataaaatctattttggtcggagaacatatcctgtatgatttcagtcctttgaaatatgctgttatttgttttatttctcaacatgtgacctatgttagtgaatgtaccatattcactttataaaatatatattctggagttgttgaatacagtgactatacatgtcagatcaagatggttgatagtgttgttcatttgtattttt-taaaaactaagaaaaagtcaagtgtggtggctcacatctgtaatcccagcactttgggaggccgagatgtgcggatcccctgatgttgggagtttgagaccagactgaccaacatggagaaaccacgtctctactaaaaatacaaaattaaccgggcatggtggcgcatgcctgtaatcccagctactcgagaggctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccgagattgagccattgcactccagcctgggcaacaagagcgaaactccatctgaaaaaaaaattaat--aaa--------aaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     616832 930 +    766320 tgacctcaagtgatccacctgcctcagcctcccaaagtagatggatgccaattgt----------------ttcagcatcattgttgaaaggaga-ttcccttcttcattggatgacctttgtacttgtattcaaaatcaggtgactctgtttttgtcctgccatttctggcctctccattctattctgttgatctatgtgtctgtccttttgccaataccacactctcttgatcaccatcctttgcagaaagactagaaatAgtatctcataattttgaaaggtatattttcatcatcatacagttgaaaatattgtctaacttcccttatgttttcttctttgatccataggttatttagaaggatgatttagaattttcaatac-tttttttttgcccttagacaacttattattgatttctaataaaatctattttggtcggagaacatatcctgtatgatttcagtcctttgaaatgtgttgttatttgttttatgtctcaacatgtgacctatgttagtgaatgtaccatattcactttacaaaatatatattctagagttgttgaatacagtgactgtacatgtcagatcaagatggttgatagtgttgttcatttgtattttt-taaaaactaagaaaaagtcgggtgtggtggctcacacctgtaatcccagcactttgggaggccgagatgtgcggatcacctaatgttgggagtttgagaccagactgaccaacatggagaaaccacgtctctactaaaagtacaaaattaaccgggcatggtggcgcatgtctgtaatcccagctacttgggaggctgaagcaggagaatcacttgaacccgggaggcagaggttgcagtgagccgagattgcgccattgcactccagcctgggcaacaagagcgaaactccatct--aaaaaaaattaat--aacaa------aaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29072583 937 -  71996105 tgacctcaagtgatccacctgcctcagcctcccaaagtagatggatgccaattgt----------------ttcagcatcattgttgaaaggaga-ttcccttcttcattggataacctttgtacttgtattcaaaatcaggtgactctattttcgtccttccatttctggcctcgctgttctattcttttgatctatgtgtctgtccttttgccaatactacactctcttgatcactgtcctttgcagacagactggaaatAgtatctcataattttgaaaggtatattttcatcatcacacagttgaaaatattgtctaacttcccttatgttttcttctttgatccatagtttatttagaaggacaatttagaattttcaatac--ttttttttgcccctagacaacttattattgatttctaataaaatctattttggtcagagaacatattctgtatgatttcagtcctttgaaatatgttgttatttgttttatgtctcaacatatgacctatgttagtgaatgtaccatattcactttacaaaatatatattctggagttgttgaatacagtgactgtaaatgtcagatcaagatggttgatagtgttgttcatttgtattttt-aaaaaactaagaaaaatccaggcgtggtggctcacgcctataattccagcactttgggaggccgagatgcgcggatcacctgaggttgggagtttgagaccagtctgaccaacacggagaaaccacgtctctactaaaaatacaaaattaactaggcatggtggtgcatgcctgtaatcccagcaactcaggaggctgaggcaggagaatcgcttgaacccgggaggcagaagttgcagtgagctgagattgcaccattgcactccagcttgggcaacaagagcgaaactccatctcaaaaaaaaaaaaaa--aaaattaaaataaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2725448 927 -   3067355 tgacctcaagtgatccacctgcctcagcctcccaaagtagatggatgccaattgt----------------ttcagcatcattgttgaaaggagatttcccttcttcattggatgacctttgtacttgtattcaaaatccggtgactgtatttttgtccttccatttctggcctctccattctattctgttgatctatatgtctgttcttttgccaataccatactctcttgatcaccgtcctttgcagaaagactggaaAAAgtatctcataattttgaatggtatattt---tcatcatacagttgaaaatattgtctaacttcccttatgttttcttctttgatccataggttatttagaaggacgagttagaattttcaatacttttttttttgcccctagacaacttattattgatttctaataaaatctattttgatcagagaacatatcctgtatgatttcagtcctttgaaatatgttgttatttgttttatgtctcaacatatgacctatgttagtgaatgtaccatattcactttacaaaatatatattctagagttgttgagtacagtgactgtacatgtcagatcaagatggttggtagtgttgttcatttgtattttt-taaaaagtaagaaaaagtcgggtgtggtggctcacacctgtaatcccagcactttgggaggccaagatgtgcggatcacctgaggttgggagttcgagaccagactgaccaacatggagaaaccatgtctctactaaaaatacaaaattaactgggcatggtggagcatgcctgtaatcccagctactcgggaagctgaggcaggagaatcgcttgaactcgggaggcagaggttgcagtgagctgagattgcaccattgcactccagcctgggcaac-agagtgaaactccatctcaaaaaaaaattaat--ta---------aaa
i colAng1.NW_012115566v1   C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e aotNan1.NW_018509740v1     373833 8539 -    457564 I
e cebCap1.NW_016107755v1     300206 10140 -   1771730 I
e calJac3.chrUn_GL286223      80793 12582 +    132061 I
e manLeu1.NW_012099233v1     283464 6405 +    290775 I

a score=2978574.000000
s hg38.chr6_GL000254v2_alt   966919 405 +   4827813 aaaa----act-aag-aaaaaatagagcatctttaacttcccaccatatatttggcatttccagtgttggtcactcctatctgaagactcaagttaccatctggtatgatttctttcaacctgggaaactccttcagtatttttcttgcagtagagttatgtttgcaacaaattatcctagttttattttatctggagacaccttttcatttttcttccctgaaaatatttttactggatgtgcaattctgagtt---------------aggttgttttctt-acagcactcaaaaaaatgccatttcattgtcttctgaccaccatagtttctgatgacaaattatgaacacatggactggtcattctcataattgttctcatgtatgtaacgtgtcatttttctctgattattctcacgatttt
s panTro5.chr6             29929674 404 + 175400573 aaaa-----ct-aag-aaaaaatagagcatctttaacttcccaccttatatttggcatttccagtgttgatcactcctatctgaagactcaagttaccatctggtatggtttctttcaacctgggaaactccttcagtatttttcttgtagtagagttatgtttgcaacaaattatcctagttttattttatctggagacaccttttcatttttcttccctgaaaatatttttactggatgtgtaattctgagtt---------------aggttgttttctt-acagcactcaaaaaaatgccatttcattgtcttctgaccaccatagtttctgatgacaaattatgaacacatggactggtcgttctcataattgttctcatgtatgtaacgtgtcatttttctctgattattctcacgatttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30163286 404 + 173848474 aaaa-----ct-aag-aaaaaatagagcatctttaacttcccaccttatatttggcatttccagtgttgatcactcctatctgaagactcaagttaccatctggtatggtttctttcaacctgggaaactccttcagtatttttcttgtagtagagttatgtttgcaacaaattatcctagttttattttatctggagacaccttttcatttttcttccctgaaaatatttttactggatgtgtaattctgagtt---------------aggttgttttctt-acagcactcaaaaaaatgccatttcattgtcttctgaccaccatagtttctgatgacaaattatgaacacatggactggtcgttctcataattgttctcatgtatgtaacgtgtcatttttctctgattattctcacgatttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5963301 404 +   6154872 aaaa-----ct-aag-aaaaaatagagcatctttaacttcccaccatatatttggcatttccagtgttgatcactcctatctgaagactcaagttaccatctggtatgatttctttcaacctgggaaactccttcagtatttttcttgtagtagagttatgtttgcaacaaattatcctagttttattttatctggagacaccttttcatttttcttccctgaaaatatttttactggatgtgcaattctgagtt---------------aggttgttttctt-acagcactcaaaaaaatgccatttcattgtcttctgaccaccatagtttctgatgacaaattatgaacacatggactggtcattctcctaattgttctcatgtatgtaacgtgtcatttttctctgattattctcacgatttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74669107 404 + 122973662 aaaa-----ct-aag-aaaaaaTAGAGCGTCTTTAACTTCCCAccatatatttggcatttccagtgttggtcactcctatctgaagactcaagttaccatctggtatgatttctttcaacctgggaaactccttcagtatttttcttgtaatagagttatgtttgcaacaaattatcctagttttattttatctggagacaccttttcatttttcttccctgaaaatatttttactggatgtgtaattctgagtt---------------aggttgttttctt-acagcactcaaaaaaatgccatttcattgtcttctgaccaccactgtttctgatgacaaattataaacacatggactggtcattctcataattgttcccaggtatgtaacgtgtcatttttctctggttattctcacgatttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30156890 419 + 172585720 aaaa-----ct-aag-aaaaaatagagcatctttaacttcccaccatatatttggcatttccagtgttggtcactcctatctgaagactcaagttaccatctggtatgatttctttcaacctgggaacctccttcagtatttttcttgtagtggcgttatgtttacaacaaattatcctagttttattttatctggagacaccttttcatttttcttccctgaaaatatttctactggatgtataattctgagttagatgtataattctgaggttgttttctt-acagcactcaaaaaaatgccatttcattgtcttctgaccaccattgtttctgatgacaaattataaacacatggaggggtcattctcataaatgttctcaggtatgtaatgtgtcatttttctctggttattctcacgatttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29820340 420 - 170955103 aaaa----act-aag-aaaaaatagagcatctttaacttcccaccatatatttggcatttccagtgttggtcactcctatctgaagactcaagttaccatctggtatgatttctttcaacctgggaacctccttcagtatttttcttgtagtggcgttatgtttacaacaaattatcctagttttattttatctggagacaccttttcatttttcttccctgaaaatatttctactggatgtataattctgagttagatgtataattctgaggttgttttctt-acagcactcaaaaaaatgccatttcattgtcttctgaccaccattgtttctgatgacaaattataaacacatggaggggtcattctcataaatgttctcaggtatgtaatgtgtcatttttctctggttattctcatgatttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2869527 405 -   2996164 aaaa----cct-aag-aaaaaatagagcgtctttaacttcccaccatatatttgccttttccagtgttggtcactcctaactgaagactcaagttactgtctggtatgatttctttcaacctgggaacttccttcagtatttttcttgtagtagagttatgtttacaacaaattatcctagttttattttatctggagacactttttcatttttcttccctgaaaatatttttactggatgtataattctgagtt---------------aggttgttttctt-acagcactcaaaaaaatgccatttcattgtcttctgaccaccattgtttccgatgacaaattataaacacatggaggggtcattctcataaatgttcccaggtatgtaaagtgtcatttttctctggttattctcacgatttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     617762 405 +    766320 aaaa----gct-aag-aaaaaatagagcatctttaacttcccaccatatatttgccttttccagtgttggtcactcctaactgaagactcaagttaccatctggtatgatttctttcaacctgggaacctccttcagtatttttcttgtagtagagttatgtttacaacaaattatcctagttttattttatctggagatactttttcatttttcttccctgaaaatatttttactggatgtataattctgagtt---------------aggttgttttctt-acagcactcaaaaaaatgccatttcattgtcttctgaccaccattgtttccgatgacaaattataaacacattgaagggtcattctcataaatgttcccaggtatgtaaagtgtcatttttctctggttattctcacgatttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29073520 409 -  71996105 aaaagaaaact-aag-aaaaaatagagcatctttagcttcccaccatatatttggcatttccagtcttggtcactcctatctgaagactcaagttaccatccgatatgatttctttcaacctgggaacctccttcagtatttttcttgtagtagcgttatgtttacaacaaattatcctagttttattttatctggagacaccttttcatttttcttccctgaaaatatttttactggatgtataattctgagtt---------------aggttgttttctt-acagcactcaaaacaatgccatttcattgtcttctgaccaccattgtttctgatgacaaactacaaacacatggaggggtcattctcacaaatattctcaggtatgtaatgtgtcatttttctctggttattctcacgatttt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2726375 405 -   3067355 aaaa----act-aagaaaaaaatagagcatctttaacttcccaccatatatttgccttttccagtgttggtcactcctgtctgaagactcaagttaccatctggtatgatttctttcaacctggg-acctccttcagtatttttcttgtagtagagttatgtttacaacgcattatcctagttttattttatctggagacactttttcatttttcttccctgaaaatatttttactggatgtataattctgagtt---------------aggttgttttctt-acagcactcaaaaaaatgccatttcattgtcttctgaccaccattgtttctgatgacaaattataaacacattgaggggtcattctcataaatgttcccaggtatgtaaagtgtcatttttctctggttattctcacaatttt
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chrUn_GL286223      93375 403 +    132061 aaaa----actaaga-aaaaaatcaagcatctttatcttcccaccgtttatttagcatttccagtgttagtcactcctatctaaaaattcaagttaccatctggtatgatttctttcaatctgggaaattcctcgagtatttttcttgtagtaaagttctgtttgcaacaaattatcctagtttta--ttatctggagacacttcttcatttttcttccctgaaaatatttttactggatgtgtaattctgagat---------------aggttgttttctt-acagcactcaacaaaa-gtaatataattgtcttctgaccaccattgtttctgatgatagattgtagacacatggactggtcatgctcataatttttctcatgtatgtaacgtgtcatttttcaatggttattctcacaatttt
i calJac3.chrUn_GL286223   I 12582 n 12582
s cebCap1.NW_016107755v1     310346 402 -   1771730 aaaa----act-agg-aaaaaatagagcatctttatcttcccaccatatatttagtatttccagtgttagtcactcctgtctgaagattcaagttaccatctggtatgatttctttcaacctgggaaattccttcagcatttttcttgtagtaaagttctgtttgcaacaaattatcctagtttta--ttatctggagagacttcttcatttttcttccctgaaaatatttttactggatgtgtaatcctgagat---------------aggttgttttctt-acagcactcaacaaaa-gtaatttaattgtcttctgaccaccattgtttctgatgacagattgtaaacacatggactggtcatgctcataattgttcttacgtatgtaacgtgttatttttctcgggttattctcacaatttt
i cebCap1.NW_016107755v1   I 10140 C 0
s aotNan1.NW_018509740v1     382372 404 -    457564 aaaa----actaaga-aaaaaatagagcatctttatcttctcaccatatatttagcgtttccagtattagtcactcttatctgaagattcaaattaccatctggtatgatttttttcaacctgggaaattccctcagtatttttcttgtagtaaagttctgtttgcaacaaattatcctagtttta--ttatctgcagacacttcttcatttttcttctctgaaaatatttttactggatgtgtaattctgagat---------------aggttgttttcttaacagcactcaacaaaa-gtaatttaattgtcttctgaccaccattgtttctgataacagattgtaaacacatggactggtcatgctcataattgttctcatgtatgtaacgtgtcatttttctctggttattctcacaatttt
i aotNan1.NW_018509740v1   I 8539 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e manLeu1.NW_012099233v1     283464 6405 +    290775 I

a score=1497000.000000
s hg38.chr6_GL000254v2_alt   967324 249 +   4827813 ctGTGACCATAGGCTGCTCAGGGCTGGACTTGGATATGGCCATAAAGTGGTACTGTAGGAAGTGCAGTATCCTGGAATTAATTCCGGACCTTGG----AATTAACAGGGCTGGGCCCCTTAGCACCTGCCCTTAGCTCTCCTTTCCCCAGGTCCCTAGAAACCCCCTCCTGATC---------------Tacacacacacacaca------------------------------ca--------------------------------------------------------------------------tgca----cacacaACTTCTAACAGGGCCCTTCTCGTTTTTCTCTCCCCC-CTGGTTCCTTCCACT
s panTro5.chr6             29930078 251 + 175400573 ctGTGACCATAGGCTGCTCAGGGCTGGACTTGGATATGGCCATAAAGTGGTACTGTAGGAAGTGCAGTATCCTGGAATTAATTCCAGACCTTGG----AATTAACAGGGCTGGGCCCCTTAGCACCTGCCCTTAGCTCTCCTTTCCCCGGGTCCCTAGAAACCCCCTCCTGATC---------------Tacacacacacacaca------------------------------ca------------------------------------------------------------------------catgca----cacacaACTTCTAACAGGGCCCTTCTCGTTTTTCTCTCCCCC-CTGGTTCCTTCCACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30163690 251 + 173848474 ctGTGACCATAGGCTGCTCAGGGCTGGACTTGGATATGGCCATAAAGTGGTACTGTAGGAAGTGCAGTATCCTGGAATTAATTCCAGACCTTGG----AATTAACAGGGCTGGGCCCCTTAGCACCTGCCCTTAGCTCTCCTTTCCCCAGGTCCCTAGAAACCCCCTCCTGATC---------------Tacacacacacacaca------------------------------ca------------------------------------------------------------------------catgca----cacacaACTTCTAACAGGGCCCTTCTCGTTTTTCTCTCCCCC-CTGGTTCCTTCCACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5963705 256 +   6154872 ctGTGACCATAGGCTGCTCAGGGCTGGACTTGGATATGGCCATAAAGTGATACTGTAGGAAGTGCAGTATCCTGGAATTAATTCCGGACCTTGG----AATTAACAGGGCTGGGCCCCTTAGCACCTGCCCTTAGCTCTCCTTT-CCCAGGTCCCTAGAAACCCCCTCGTGATC---------------Tacacacacacacaca------------------------------ca------------------------------------------------------------------cacacacatgca----cacacaACTTCTAACAGGGCCCTTCTCGTTTTTCTCTCCCCC-CTGGTTCCTTCCACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74669511 254 + 122973662 ctGTGACCATAGGCTGCTCAGGGCTGGACTTGGATATGGCCATGAAGTGATACTGCAGGAAGTGCAGTATCCTGGAATTAATTCCATACCCTGG----AATTAACAAGGCTGGGCCCCTTAGCACCTGCCCTTAGCTCTCCTTTCCCCAGGCCCCTAGAAACCCCCTCCTGATC---------------Tacacacacacacata------------------------------ca--------------------------------------------------------------------cacacatgca----cacacaACTTCTAACAGGACCCTTCCCATTTTTCTCT-CCCC-CGGGTTCCTTCCACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30157309 266 + 172585720 ctGTGAACACAGGCTGCTCAGGGCTGGACTTGGATATGGCCATGAAGTGATACTACAGGAAGTG---------------------AGACCCTGG----ACTTAACAGGGCTGGGCCCCTTAGCACCTGCCCTTAGCTCTCCTTTCCCCAGGTCCCTAGAAACACCCTCCTGATC---------------Tacacacacacacaca------------------------------cacgcacacacacacacgca----------------------------------------catgcacacacacacatgcacaTTCACACAACTTCTAACAGGACCCTTCCCATTTTTCTCTCCCCC-CTGGTTCCTTCCACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29820760 264 - 170955103 ctGTGACCACAGGCTGCTCAGGGCTGGACTTGGATATGGCCATGAAGTGATACTACAGGAAGTG---------------------AGACCCTGG----ACTTAACAGGGCTGGGCCCCTTAGCACCTGCCCTTAGCTCTCCTTTCCCCAGGTCCCTAGAAACACCCTCCTGATC---------------Tacacacacacacaca------------------------------cgcacacacacacacgcacatgca------------------------------------------cacacacacaTGCACATTCACACAACTTCTAACAGGACCCTTCCCATTTTTCTCTCCCCC-CTGGTTCCTTCCACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2869932 288 -   2996164 ctGTGACCACAGGCTGCTCAGGGCTGGACTTGAATATGGCCATGAAGTGATACTACAGGAAGTG---------------------AGACCCTGA----AATTAACAGGGCTGGGCCCCTTAACACCTGCCCTTAGCTTTCCTTTCCCCAGGTCCCTAGAAACACCCTCCTGATC---------------Tacacacacacacaca------------------------------cacgcacgcacacacacacatgca------------------cacacacatgcacacacacacatgcacacacacatgcacaTGCACACAACTTCTAATAGGACCCTTCCCATTTTTCTCTCACCC-CTGGTTCCTTCCACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     618167 330 +    766320 ctGTGACCACAGGCTGCTCAGGGCTGGACTTGAATATGGCCATTAAGTGATACTACAGGAAGTG---------------------CGACCCTGAAATTAATTAACAGGGCTGGGCCCCTTAACACCTGCCCTTAGCTTTCCTTTCCCCAGGTCCCTAGAAACACCCTTCTGATC---------------Tacacacacacacacacatatatgcacacgcgcgcacacacacatgcacacacacgcgcacacacatgcacacacacatgcacacacgcacacaca----------cacacgcacacacacatgcacacacacacaACTTCTAACAGGACCCTTCCTATTTTTCTCTCCCCC-CTGGTTCCTTCCACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29073929 243 -  71996105 ctGTGACCATAGGCTGCTCAGGGCTGGACTTGGATATGGCCATGAAGTGATACTACAGGAAGTG---------------------AGATCCTGA----AATTAACAGGGCTGGGACCCTTAGCACCTGCCCTTAGCTCTCCTTTCCCCAGGTCACTAGAAACACCCTCCTGATC---------------Tacacacacacacagg------------------------------ca----------------------------------------------------------------cacacacacatgcacacacacacaACTTCTAACAGGACCCTTCCTATTTTTCTCTTCCCCGCTGGTTCCTTCCACC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2726780 224 -   3067355 ctGTGACCACAGGCTGCTCAGGGCTGGACTTGAATATGGCCATGAAGTGATACTACAGGAAGTG---------------------AGACCCTGA----AATTAACAGGGCTGGGCCCCTTAACACCTGCCCTTAGCTTTCCTTTCCCCAGGTCCCTAGAAACACCCTCCTGATC---------------Tacacacacatgcaca------------------------------ca----------------------------------------------------------------------------------cacacaACTTCTAACAGGACCCTTCCCATTTTTCTCTCCCCC-CTGGTTCCTTCCACT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30102709 244 + 171630274 CTGTGACCCCAGGCCTCGTGGGGCCGGACTCTGATATGACAGTAAGGTCCAGCT-CAGAAAGTA---------------------TGGCCCTGG----AACTATTA-CCCTGGGCCCCTTAGCACCTGGCCTTAGCTATCTTTTCTTCAGGACCCTAGGGACTCCCTCCTGCTC-------Tacacacacacacacacacacaca------------------------------ca----------------------------------------------------------------cacacacacacaca----cacacacCTTCTAAAGGAATACTTCCCGTTTTTCTCTCCTCC-CTGACTCACtcttct
i calJac3.chr4             I 21744 I 260
s cebCap1.NW_016107755v1     310748 253 -   1771730 ctGTGAACACAGGCTGCTCAGGGCTGGACTGGGTTATGGCCATGAAATGATACTGCAGGAAGTG---------------------AGACCATGG----AATTAACAGGGCTGGGTCCCTTAGCACCTGCCCTTAGCTCTCCTTTCCTCAGGCCCCTATATACCCCCTCCTGATcacacacacacacatacacacacatacacaca------------------------------ca----------------------------------------------------------------cacacacacacaca----cacacCCCTTCTAACAGGACCCTTCCCATTTTTCTCTCCTCC-CTGGTTCCTTCCACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     382776 239 -    457564 ctGTGAACACAGGCTGCTCAGGGCTGGACTGGAATATGGCCATGAAGTGATACTGCAGGAAGTG---------------------AGACCATGG----AATTAACAGGGCTGGGTCCCTTAGCACCTGCCCTTAGCTCTCCTTTCCTCAGGCCCCTAGATAGCCCCTCCTGATC--------------Tcacacacacacacaca------------------------------ca----------------------------------------------------------------cacacacacacaca----cacacCCCTTCTAACGGGACCCTTTCCATTTTTCTCTCCTCC-CTGGTTCCTTCCACT
i aotNan1.NW_018509740v1   C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e manLeu1.NW_012099233v1     283464 6405 +    290775 I

a score=7800.000000
s hg38.chr6_GL000254v2_alt   967573 1 +   4827813 C
s panTro5.chr6             29930329 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30163941 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5963961 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74669765 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30157575 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29821024 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2870220 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     618497 1 +    766320 C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29074172 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2727004 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     311001 1 -   1771730 C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     383015 1 -    457564 C
i aotNan1.NW_018509740v1   C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e calJac3.chr4             30102953 260 + 171630274 I
e manLeu1.NW_012099233v1     283464 6405 +    290775 I

a score=3842995.000000
s hg38.chr6_GL000254v2_alt   967574 539 +   4827813 TCCCCCTTCTCTTATGATCCATTTCATCTCCCTTCTGCTCT------------------CTGGACCAAGGCC-CCAGGCCCGGACTCCAGGCTTGGAGCTCACAGGCTGATTCCTGGGATGAGCAGCCTCCACCTgcaggagcagcagcaggaacaagggaggggacaggagGGCAAGGCCCCATTTTGGAGGCTGAGGGACTAGGTCATGTGGTAGCAATGGTTTGGGGGTGGATGAGCCCCAGATATGATCCCACTGTTTTGGCCTGGAGG--TATCTCTTCCCTAAAGCCAAAATCCAGAGTCACTCAGTGGTGGGAGGAAAC--GTCAGTGTCAACATGGATTTTGGGAAGCTGGATGGACTCAGAGCCTGACTTGAGATCGGGA-ACCCCTTTGTATGCAGAGCCCTGTCCAGGTGCTGGGAGC---AG--GAGAGCCTGGGAGGTCCTG---GCTAGGGAGAAAGGGGAGCGGGAT-CTCTGTCCTCGGC---CCTGTGGCCACACGGGGGCGTCGCTGCGCTGCTCTCGGATT----CTGAGTGCTCTCCTGGACGGGGCTGCGGGCTGAAT
s panTro5.chr6             29930330 537 + 175400573 TCCCCCTTCTCTTATGATCCATTTCATCTCCCTTCCACTCT------------------CTGGACCAAGGCC-CCAGGCCCGGACTCCAGGGTTGGAGCTCACAGGCTGATTCCTGGGATGAGCAGCCTCCACCTgcaggagcagcagcaggaacaagggaggggacaggagGGCAAGGCCCCATTTTGGAGGCTGAGGGACTAGGTCATGTGGTAGCAATGGTTTGGGGGTGGATGAGCCC--GATATGATCCCACTGTTTTGGCCTGGAGG--TATCTCTTCCCTGAAGCCAAAATCCAGAGTCACTCAGTGATAGGAGGAAAC--GTCAGTTTCAACATGGATTTTGGGAAGCTGGATGGACTCAGAGCCTGACTTGAGATCGGGA-ACCCCCTTGAATGCAGAGCCCTGTCCAGGTGCTGGGAGC---AG--GAGAGCCTGGGAGGTCCTG---GCTAGGGAGAAAGAGGAGAGGGGT-CTCTGTCCTCGGC---CCTGTGGCCACACGGGGGCGCCGCTGCGCCGCTCTCGGATT----CTGAGTGCTCTCCCGGACGGGGCTGCGGGCTGAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30163942 537 + 173848474 TCCCCCTTCTCTTATGATCCATTTCATCTCCCTTCCGCTCT------------------CTGGACCAAGGCC-CCAGGCCCGGACTCCAGGGTTGGAGCTCACAGGCTGATTCCTGGGATGAGCAGCCTCCACCTgcaggagcagcagcaggaacaagggaggggacaggagGGCAAGGCCCCATTTTGGAGGCTGAGGGACTAGGTCATGTGGTAGCAATGGTTTGGGGGTGGATGAGCCC--GATATGATCCCACTGTTTTGGCCTGGAGG--TATCTCTTCCCTGAAGCCAAAATCCAGAGTCACTCAGTGATAGGAGGAAAC--GTCAGTTTCAACATGGATTTTGGGAAGCTGGATGGACTCAGAGCCTGACTTGAGATCGGGA-ACCCCCTTGAATGCAGAGCCCTGTCCAGGTGCTGGGAGC---AG--GAGAGCCTGGGAGGTCCTG---GCTAGGGAGAAAGAGGAGAGGGGT-CTCTGTCCTCGGC---CCTGTGGCCACACGGGGGCGCCGCTGCGCCGCTCTCGGATT----CTGAGTGCTCTCCCGGACGGGGCTGCGGGCTGAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5963962 539 +   6154872 TCCCCCTTCTCTTATGCTCCATTTCGTCTCCTTTCTGCTCT------------------CTGGACCAAGGCC-CCAGGCCCGGACTCCAGGGTTGGAGCTCACAGGCTGATTCCTGGGATGAGCAGCCTCCACCTGCAAGAGCAGCAGCAGGAACAAGGGAGGGGACAGGAGGGCAAGGCCCCATTTTGGAGGCTGAGGGACTAGGTCATGTGGTAGCAATGGTTTGGGGGTGGATGAGCCCCAGATATGATCCCACTGTTTTGGCCTGGAGG--TATCTCTTCCCTGAAGCCAAAATCCAGAGTCACTCAGTGGTGGGAGGAAAC--GTCAGTGTCAACATGGATTTTGGGAAGCTGGATGGACTCAGAGCCTGACTTGAGATCGGGA-ACCGCCTTGTATGCAGAGCCCTGTCCGGGTGCTGGGAGC---AG--GAGAGCCTGGGAGGTCCTG---GCTAGGGAGAAAGGGGAGCGGGGT-CTCTGTCCTCGGC---CCTGTGGCCACACGGGGGCGCCGCTGCGCTGCTCTCGGATT----CTGAGTGCTCTCCGGGACGGGGCTGCGGGCTGAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74669766 544 + 122973662 TCCCCCTTCTCTTATGATCCATTTCTTCTCCCTTCTGCTCT------------------CTGGACCAAGGCC-CCAGGCCTGGACTCCAGGGTTGGAGCTCACAGGTTGATTCCTGGGATGAGCAGCCTCCACCTGCAGGAGCAGCAGCAGGAACAAAGGAGGGGACAGGAGCGCAAGGCCCCATTTTGGAGGCTGACGCACTGGGTCATGTGGTAGCAATGGTTTGGGGGTGGATCAGCCCCAGATATGATCCCACTGTTTTGGCCTGGAGG--TATCTCTTCCCTGAAGCCAAAATCC--AGTCACTCAGTGGTGGGAGGAAAC--GTCAGTGTCAACATGGATTTTGGGAAGCTGGATGGACTCAGAGCCTGACTTGAGATCGGGA-ACCCCCTTATGTGCAGAGCCCTGTCCGCGTGCTGGGAGC---AGGAGAGAGCCTGGGAGGTCCTG---GCTGGGGAGAAAGGGGAACGGGTTCCTCTGTCCTCGGC---CCTGTGGCCACACGGGGGCGCCGCTGCGCTGCTCTCGGATTCTGACTGAGTGCTCTCTGGGACCGGGCTGCGGGCTGAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30157576 549 + 172585720 TCCCCCTTCTCTTATGATCCATTTCTTCTCCCTTCTGCTCT------------------CTGGACCAAGGGC-CCAGGGATGGACTCCAGGGTTGGAGCTCACAGGCTGATTCCTGGGATGAGCAGCCTCCACCTgcaggagcagcagcaggaacaagggaggggacaggaAGGCAAGGCCCCATTTTGGAGGATGAGGGACTGGGTCATGTGGTAGCAATGGTTTGGGGGTAGGTCAGCCCCAGATATGATCCCACTGTTTTGGCCTGGAGG--TATCTCTTCCCTGAAGCCAAAATCCAGAGTCACTCAGTGGTGGGAGGAAACGGGTCAGTGTCAACATGGATTTTGGGAAGCTGGATGGACTCAGAGCCTGACTTGAGACCGGGA-ACCTCCTTGTGTGCAGAGCCCTGTCCAGGTGCTGGGAGC---AG--GAGAGCCTGGGAGGTCCTGGCTGCTGGGGTAAAAGGGGAGCGGGGTCCTCTGTCCTCGAC---CATGTGGCCACATGGGGGCGCCGCTGCGCTGCTCTCGGATCCTGACTGAGCGCTCTCCGGGACGGGGCTGCGGGCTGAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29821025 549 - 170955103 TCCCCCTTCTCTTATGATCCATTTCTTCTCCCTTCTGCTCT------------------CTGGACCAAGGGC-CCAGGGATGGACTCCAGGGTTGGAGCTCACAGGCTGATTCCTGGGATGAGCAGCCTCCACCTgcaggagcagcagcaggaacaagggaggggacaggaAGGCAAGGCCCCATTTTGGAGGATGAGGGACTGGGTCATGTGGTAGCAATGGTTTGGGGGTGGGTCAGCCCCAGATATGATCCCACTGTTTTGGCCTGGAGG--TATCTCTTCCCTGAAGCCAAAATCCAGAGTCACTCAGTGGTGGGAGGAAACGGGTCAGTGTCAACATGGATTTTGGGAAGCTGGATGGACTCAGAGCCTGACTTGAGACCGGGA-ACCTCCTTGTGTGCAGAGCCCTGTCCAGGTGCTGGGAGC---AG--GAGAGCCTGGGAGGTCCTGGCTGCTGGGGTAAAAGGGGAGCGGGGTCCTCTGTCCTCGAC---CATGTGGCCACATGGGGGCGCCGCTGCGCTGCTCTCGGATCCTGACTGAGCGCTCTCCGGGACGGGGCTGCGGGCTGAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2870221 538 -   2996164 TCCCCTTTCTCTTATGATCCATTTCTTCTCCCTTCTGCTGT------------------CTGGACCAAGGGC-CCAGGGCCGGACTCCAGGGTTGGAGCTCACAGGCTGATTCCTGGGATGAGCAGCCTCCACCTGCAGGAGCAGCAGTAGGAACAAGGGAGGGGACAGGAAGGCAAGGTCCCATTTTGGAGGATGAGGGACTGAGTCATGTGGTAGCAATGGTTTGGGGATGGGTCAGCCCCAGATATGATCCCACTGTTTTGGCCTGGAAG--TATCTCTTCCCTGAATCCAAAATCCAGAATCACTCAGTGGTGGGAGGAAAT--GTCAGTGTCAACATGGATTTTGGGAAGCTGGATGGACTCAGAGCCTGACTTGAGACCGGGA-ACCCCCTTGTGTGCAAAGCCCTGTCAAGGTGCTGGGAGCAGAAG--GAGAGCCTGGGAGGTCCTG---GCTGGGGAGAAAGGGGAGCGGGGTCCTCGCTCTTCGGC---CCTGTGGCCACACGGGGGCGCCGCTGCGCTGCTCTCGGATCCTGACTGAGC---------GACGGGGCTGCGGGCTGAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     618498 547 +    766320 TCCCCCTTCTCTTATGATCCATTTCTTCTCCCTTCTGCTCT------------------CTGGACCAAGTGC-CCAGGGCCGGACTCCAGGGTTGGAGCTCACAGGCTGATTCCTGGGATGAGCAGCCTCCACCTGCAGGAGCAGCAGTAGGAACAAGGGAGGGGACAGGAGGGCAAGGTCCCATTTTGGAGGATGAGGGACTAGGTCATGTGGTAGCAATGGTTTGGGGGTGGATCAGCCCCAGATATGATCCCACTGTTTTGGCCTGGAGG--TATCTCTTCCCTGAATCCAAAATCCAGAATCACTCAGTGGTGGGAGGAAAT--GTCAGTGTCAATATGGATTTTGGGAAGCTGGATGGACTCAGAGCCTGACTTGAGACCGGGA-ACCCCCTTGTGTGCAGAGCCCTGTCAAGGTGCTGGGAGCAGAAG--GAGAGCCTGGGAGGTCCTG---GCTGGGGAGAAAGGGGAGCGGGGTCCTCGCTCTTCGGC---CCTGTGGCCACACGGGGGCGCCGCTGCGCTGCTCTCGGATCCTGACTGAGCGCTCTCCGGGACAGGGCTAAGGGCTGAGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29074173 545 -  71996105 TCCCCCTTCTATTATGATCCATTTCTTCTCCCTTCTGTTCT------------------CTGGACCAAGGGC-CCAGGGCCAGACTCCAGGGTTGGAGCTCACAGGCTGATTCCTGGGACGAGCAGCCTCCACCTGCAGGAGCAGCAGTAGGAACAAGGGAGGGGACAGGAGGGCAAGGCCCCATTTTGGAGGATGAGGGACTGGGTCA--TGGTAGCAATGGTTTGGGGGTGGGTCAGCCCCAGATATGATCCCACTGTTTTGGCCTGGAGG--TATCTCTTTCCTGAAGCTAAAATCCAGAGTCACTCAGTGGTGGGAGGAAAT--GTCAGTGTCAACATGGATTTTGGGAAGTTGGATGGACTCAGAGCCTGACTTGAGACCGGGA-ACCCCCTTGTGTGCAGAGCCCTGTCCAGGTGCTGGGAGCAAAAG--GAGAGCCTGGGAGGTCCTG---GCTGGGGTAAAAGGGGAGCGGGGTCCTCGCTCTTCGGC---GCTGTGGCCACACGGGGGCGTCGCTGCGCTGCTCTCGGATCCTGACTGAGCGCTCTCCGGGACGGGGCTGCGGGCTGAGT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2727005 547 -   3067355 TCCCTCTTCTCTTATGATCCATTTCTTCTCCCTTCCGCTCT------------------CTGAACCAAGGGC-CCAGGGCCAGACTCCAGGGTTGGAGCTCACAGGCTGATTCCTGGGATGAGCAGCCTCCACCTGCAGGAGCAGCAGTAGGAACAAGGGAGGGGACAGGAGGGCAAGGCCCCATTTTGGAGGATGAGGGACTGGGTCATGTGGTAGCAATGGTTTGGGGGTGGGTCAGCCCCAGATACGATCCCACTGTTTTGGCCTGGAGG--TATCTCTTCCCTGAAGCCAAAATCCAGAATCACTCAGTGGTGGGAGGAAAT--GTCAGTGTCAACATGGATTTTGGGAAGCTGGATGGACTCAGAGCCTGACTTGAGACCGGGA-ACCCCCTTGTGTGCAGAGCCCTGTCAAGGTGCTGGGAGCAGAAG--GAGAGCCTGGGAGGTCCTG---GCTGGGGAGAAAGGGGAGCGGGGTCCTCGCTCTTCGGC---CCTGTGGCCACACAGGGGCGCCGCTGCGCTGCTCTCGGATCCTGACTGAGCGCTCTCTGGGACAGGGCTGCGGGCTGAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30103213 563 + 171630274 TCCTTGTTCTCTTATGATCCATTTCTTCTCCCTTCTGCTCCTTGGAACCTCCCTTCTTCCTGGACCGAGGCTGCTCTCCCTATACCCCAGGGTTGGCGCTCAAAGGCTGATTCCTGGGATGAGCAGCCTCCACTTGCAGGAGCAGTGGCAGGAACAAGGGACAGGACAGGAGGCCAAGGTCTCATCCTGGAGGCTGAGGGATTAGGTCTTCTGGTAACACGGGTTTGGGGGTGGGTCAACCCCAGACCTGAACCTGCTGTTTTGCCCTGGAAGCCTCTCTCTGCCCTGAGATGAAAGTGCAG------TCAGTTGCAGGAGAAAAC--GGTCATATCAACATGGATTTTGGGAGGCTGGATGGACTCAGAGCCTGACTTGAGACCCAGAGGCTCCCTCTTGTGCACAGCCCTGTCCTTGTGCTGGGAGCAGAGG--AAGAGCCTAGGAGGTCCTG---GCTGGGGATAGAGGGGA---GAGTCGTCCTCTGTCCTGGGTCCTGTGGCTATGCTAGGACGTTGCTGTGCTGCTCTCGGATTCTGACTGAGCACTCTCTGGGACAGGGCTGCGGGCTGAGT
i calJac3.chr4             I 260 C 0
s cebCap1.NW_016107755v1     311002 564 -   1771730 TCTCCTTTCTCTTATGATCCATTTCTTCT-CCTTCTGCTCTCTGGAGCCTCCCTCCTTCCTGGACTGAGGCC-CCAGGCCAGGACTCCAGGGTTGGAGCTCACAGGCTGATTCCTGGGATGAGCAGCCGCCATCTGTAGAAGCAGCAGCAGGAACAAGGGAGGGGATAGGAGGCCAAGACCCCATTTTAGAGGCTGAGAGACTGGGTCATGTGGTAGCAAGGGTTTGGGGGTAGGTCAGCCCCAGACCTGATCCTACTGTTTTGGCCTAGAGG--TATCATTTCTTTGAGGCCAAAATCCAGAGTCACTCAGTGGTGGGAGGAAAC--GTCAGTGTCAACATGGATTTTGGGAAGTTGGATGGACTCAGAGCCTGACTCGAGATCGGGAGGCTTCCTTGTGTGCAGAGCCCAGTCCAGGTGCTGGGAGCAGAGC--GGGAGCCTGGGAGGTCCTG---GCTGGGGAGGGAGGGGATC-GGGTCGTCTGTCCTCCTG---CCTGTGGCCACATGGGGACGCTGCCGCGCTGCTCTGGGATTCTGACTGAGCGCTCTCCGGGATGGGCCTGCGCGTTGAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     383016 566 -    457564 TATCCCTTCTCTTATGATCCATTTCTTCTCCCTTCTGCTCTCTGGAGCCTCCCTCCTTCCTGGACCAAGGCC-CCAGGCCAGGACTCCAGGGTTGGAGCTCACAGGCTGATTCCTGGGATGAGCAGCCTCCACCTGCAGAAGCAGCAGCAGGAACAAGGGAGGGGATAGGAGGCCAAGACCCCATTTTAGAGGCTGAGAGACTGGGTCATGTGGTAGCAATGGTTTGGGGGTAGGTCAGCCCCAGACCTGATCCTACTGTTTTGGCCTGGAGG--TATCGCTTCTTTGAGGCCAAAATCCAGAGTCACTCAGTAGTGGGAGGAAAC--GTCAGTGTCAACATGGATTTTGGGAAGCTGGATGGATTCAGAGCCTGACTCGAGATCGTGAGGCTTCCTTGTGTGCAGAGCCCAGTCCAGGTACTGGGAGCAGAGG--GGGAGCCTGGGAGGTCCTG---GCTGGGGAGGGAGGGGATCGGGGTCCTCTGTCCTCCGG---CCTGTAGCCACATGGGAGCGCTGCCGCGCTGCTCTGGGATTCTGACTGAGCGCTCTCCGGGCTGGGCCTGCGGGCTGAGT
i aotNan1.NW_018509740v1   C 0 C 0
e saiBol1.JH378388            37897 5473 -    110772 M
e manLeu1.NW_012099233v1     283464 6405 +    290775 I

a score=140608.000000
s hg38.chr6_GL000254v2_alt   968113 18 +   4827813 GGGCAGACGGGGCTGAAC
s panTro5.chr6             29930867 18 + 175400573 GGGCAGACGGGGCTGAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30164479 18 + 173848474 GGGCAGACGGGGCTGAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5964501 18 +   6154872 GGGCAAACGGGGCTGAAC
i gorGor5.CYUI01015250v1   C 0 I 5
s nomLeu3.chr1a            74670310 18 + 122973662 GGGCAGACGGGGCTGAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30158125 18 + 172585720 GGGCAGGCGGGGCTGAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29821574 18 - 170955103 GGGCAGGCGGGGCTGAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2870759 18 -   2996164 GAGCAAACCGGGCTGAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     619045 18 +    766320 GGGCAAACCGGGCTGAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29074718 18 -  71996105 GGGCAGACGGGGCTGAAC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2727552 18 -   3067355 GGGCAGACGGGGCTGAAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30103776 18 + 171630274 GGGCAGAAATAGCTAAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378388            43370 18 -    110772 GGGCAGAGGAGGCTGAGC
i saiBol1.JH378388         M 5473 C 0
s cebCap1.NW_016107755v1     311566 18 -   1771730 GGGCAGAGGAGGCTGAGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     383582 18 -    457564 GGGCAGAGGAGGCTGAGC
i aotNan1.NW_018509740v1   C 0 C 0
e manLeu1.NW_012099233v1     283464 6405 +    290775 I

a score=37491.000000
s hg38.chr6_GL000254v2_alt   968131  9 +   4827813 CTGAGG-TCA
s panTro5.chr6             29930885  9 + 175400573 CTGAGG-TCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30164497  9 + 173848474 CTGAGG-TCA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74670328  9 + 122973662 CTGAGG-TCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30158143  9 + 172585720 CTGAAG-TCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29821592  9 - 170955103 CTGAAG-TCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2870777 10 -   2996164 CTGAGGTTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     619063 10 +    766320 CTGAGGTTCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29074736 10 -  71996105 CTGAGGTTCA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2727570  7 -   3067355 CTGA---CCA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30103794  9 + 171630274 ATGAGG-TCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378388            43388  7 -    110772 CTGA---TCA
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     311584  9 -   1771730 CTGAGA-CCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     383600  9 -    457564 GTGAGA-TCA
i aotNan1.NW_018509740v1   C 0 C 0
e manLeu1.NW_012099233v1     283464 6405 +    290775 I
e gorGor5.CYUI01015250v1    5964519  5 +   6154872 I

a score=269844.000000
s hg38.chr6_GL000254v2_alt   968140 34 +   4827813 TCCACGCTGAGACGGAGGTTCCTCCTGAGCACCT
s panTro5.chr6             29930894 34 + 175400573 TCCACGCTGAGATGGAGGTTCCTCCTGAGCACCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30164506 34 + 173848474 TCCACGCTGAGATGGAGGTTCCTCCTGAGCACCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5964524 34 +   6154872 TCCACGCTGAGGCGGAGGTTCCTCCTGAGCACCT
i gorGor5.CYUI01015250v1   I 5 C 0
s nomLeu3.chr1a            74670337 34 + 122973662 TCCACGCTAGGATGGAGGTTCCTCCTGAGCAGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30158152 34 + 172585720 TCCACGCTGGGATGGAGATTCCTCCTGAGCAGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29821601 34 - 170955103 TCCACGCTGGGATGGAGATTCCTCCTGAGCAGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2870787 34 -   2996164 TCCACGCTGGGATGGAGGTTCCCCCTGAGCAGCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     619073 34 +    766320 TCCACGCTGGGATGGAGGTTCCCCCTGAGCAGCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29074746 34 -  71996105 TCCACGCTGGGATGGAGGTTCCTCCTGAGCAGCC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2727577 34 -   3067355 TCCACGCTGGGATGGAGGTTCCCCCTGAGCAGCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30103803 33 + 171630274 TCCACGTGGTT-TGGAGGTTACTCCTGAGCAGCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378388            43395 34 -    110772 TCCCCGCGGGGATGGAGGTTCCTCCTGAGCAGCC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     311593 34 -   1771730 TCCCAGCGGGGATGGAGGCTCCTCCTGAGCAACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     383609 34 -    457564 TCCCCGCGGGGATGGAGGTTCCTCCTGAGCAGCC
i aotNan1.NW_018509740v1   C 0 C 0
e manLeu1.NW_012099233v1     283464 6405 +    290775 I

a score=672416.000000
s hg38.chr6_GL000254v2_alt   968174 70 +   4827813 CTGGAATCCACAGGACTCAGGTTAGATTTGTTTGTCTTGCAACGTGAGGCAATTGTGGTGTAGCAAGATC
s panTro5.chr6             29930928 70 + 175400573 CTGGAATCCACAGGACTCAGGTTAGATTTGTTTGTCTTGCAACGTGAGGCAATTGTGGTGTAGCAAGATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30164540 70 + 173848474 CTGGAATCCACAGGACTCAGGTTAGATTTGTTTGTCTTGCAACGTGAGGCAATTGTGGTGTAGCAAGATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5964558 70 +   6154872 CTGGAATCCACAGGACTCAGGTTAGATTTGTTTGTCTTGCAACGTGAGGCAATTGTGGTGTAGCAAGATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74670371 70 + 122973662 CTGGAATCCACAGGACTCAGGTTAGATTTGTTTGTCTTGCAACGTGAAGCAATTGTGGTGTAGCAAGATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30158186 66 + 172585720 CTGGAATCCACAGGACTCAGGTTAGA----TTTGTCTTGCAACGTGAGGCAATTGTGGTGTAGCAAGATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29821635 66 - 170955103 CTGGAATCCACAGGACTCAGGTTAGA----TTTGTCTTGCAACGTGAGGCAATTGTGGTGTAGCAAGATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2870821 70 -   2996164 CTGGAATCCACAGGGCTCAGGTTAGATTTGTTTGTCTTGCAACGTGAGGCAATTATGGTGTAGCAAGATC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     619107 70 +    766320 CTGGAATCCACAGGGCTCGGGTTAGATTTGTTTGTCTTGCAACTTGAGGCAATTGTGGTGTAGCAAGATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29074780 70 -  71996105 CTGGAATCCACAGGACTCAGGTTAGATTTGTTGGTCTTGCAAAGTGAGGCAATTGTGGTGTAACAAGATC
i chlSab2.chr17            C 0 I 181
s manLeu1.NW_012099233v1     289869 70 +    290775 CTGGAATCCACAGGGCTCAGGTTAGATTTGTTTGTCTTGCAACGTGAGGCAATTGTGGTGTAGCAAGATC
i manLeu1.NW_012099233v1   I 6405 C 0
s colAng1.NW_012115566v1    2727611 70 -   3067355 CTGGAATCCACAGGACTCAGGTTAGATTTGTTTGTCTTGCAACGTGAGGCAATTGTGGTGTATCAAGGTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30103836 70 + 171630274 CTGTAATCTACGGGGCTCAGGCTAGATTTGCTTGTCTTGCAACGTGAAGCAATTGTGGAGTAGCAAGAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378388            43429 69 -    110772 CTGGAATCCAC-AGACTCAGGCTAGATTTGTTTGTCTTGCAACGTGAGGCAATTGTGGAGCAGCAGGAGC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     311627 69 -   1771730 CTGGAATCCAC-AGACTCAGGCTAGATTTGTTTGTCTTGCAACGTGAGGCAATTGCGGAGCAGCAAGAGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     383643 69 -    457564 CTGCAATCCAC-AGACTCAGGCTAGATTTGTTTGTCTTGCAACGTGAGGCAATTGTGGAGCAGCAAGAGC
i aotNan1.NW_018509740v1   C 0 C 0

a score=2600471.000000
s hg38.chr6_GL000254v2_alt   968244 287 +   4827813 TGGCTCTAGAATTCTTATGGCAAA-ATAGCTGTCATAGAATCCAACTAGAATGAGA-GTCCAGGGCCTGGGTTGA--CTGCCCTGGGCACACCTGACTCTTGATGGGGTTGCC-AAAATGTAGCTT-GGCATTTACAAAAATTCTTTCCAAAGATTGCATCAAAGTCCAAAAGAATTATGTACAATTTCATTTCTGATGTCTCTGGCTGTGCTTTCGAAAGGGCAGGAAGAGCCATGGAAAGAGGCTGAAAGGCCCCTCTGGGAATTCTCAAATCTCTTTTCATAGCAGTAAC
s panTro5.chr6             29930998 287 + 175400573 TGGCTCTAGAATTCTTATGGCAAA-ATAGCTGTCATAGAATCCAACTAGAATGAGA-GTCCAGGGCCTGGGTTGA--CTGCCCTGGGCACACCTGACTCTTGATGGGGCTGCC-AAAATGTAGCTT-GGCATTTACAAAAATTCTTTCCAAAGATTGCATCAAAGTCCAAAAGAATTACGTACAATTTCATTTCTGATGTCTCTGGCTGTGCTTTCGAAAGGGCAGGAAGAGCCATGGAAAGAGGCTGAAAGGCCCCTCTGGGAATTCTCAAATCTCTTTTCATAGCAGTAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30164610 287 + 173848474 TGGCTCTAGAATTCTTATGGCAAA-ATAGCTGTCATAGAATCCAACTAGAATGAGA-GTCCAGGGCCTGGGTTGA--CTGCCCTGGGCACACCTGACTCTTGATGGGGCTGCC-AAAATGTAGCTT-GGCATTTACAAAAATTCTTTCCAAAGATTGCATCAAAGTCCAAAAGAATTATGTACAATTTCATTTCTGATGTCTCTGGCTGTGCTTTCGAAAGGGCAGGAAGAGCCATGGAAAGAGGCTGAAAGGCCCCTCTGGGAATTCTCAAATCTCTTTTCATAGCAGTAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5964628 287 +   6154872 TGGCTCTAGAATTCTTATGGCAAA-ATAGCTGTCATAGAATCCAACTAGAATGAGA-GTCCAGGGCCTGGGTTGA--CTGCCCTGGGCACACCTGACCCTTGATGGGGTTGCC-AAAATGTAGCTT-GGCATTTACAAAAATTCTTTCCAAAGATTGCATCAAAGTCCAAAAGAATTATGTACAATTTCATTTCTGATGTCTCTGGCTGTTCTTTCGAAAGGGCAGGAAGAGCCATGGAAAGAGGCTGAAAGGCCCCTCTGGGAATTCTCAAATCTCTTTTCATAGCAGTAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74670441 285 + 122973662 TGGCTCTAGAATTCTTATGGCAAA-ATAGCTGTCATAGAATCCAACCAGAAAGAGA-GTCCAGGGCCTGTGTTGA--CTGCCCTGGGCACACCTGACTC-TGATGGGGTTGCC-AAAATGTAGCTT-GGCATTTACAAAAATTCTTTCCGAAGATTGCAACAAAATCCAAAAGAATTATGTGCAATTTCATTTCTGATGTCTCTGGCTGTGCTTTCGAAAGGGCA-GAAGAGCCATGGAAAGAGGCTGAAAGGCCCCTCTAGGAATTCTCAAATCCCTTTTCATAGCCGTAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30158252 285 + 172585720 TGACTCTAGAATTCTTATGGCAAA-ATAGCTGTCATAGAATCCAACCAGAATG-AG-GTCCAGGGCTTGCGTTGA--CCGCCCTGGGCACACCTGACTC-TGATGGGGTTGCC-AAAATGTAGCTT-GGCATTTACAAAAGTTCTTTCCAAAGATTGCATCAAAGTCCAAAAGAAGTATGTACAATTTCATTTCTGATGTCTCTGGCTGTGCTTTCGAAAGGGCAGGAAGAGCCATGGAAAGAGGCTGAAAGACCCCGGTGAGAATTCTCAAATCCAAATTCATAGCGGTAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29821701 285 - 170955103 TGACTCTAGAATTCTTATGGCAAA-ATAGCTGTCATAGAATCCAACCAGAATG-AG-GTCCAGGGCTTGCGTTGA--CCGCCCTGGGCACACCTGACTC-TGATGGGGTTGCC-AAAATGTAGCTT-GGCATTTACAAAAGTTCTTTCCAAAGATTGCATCAAAGTCCAAAAGAAGTATGTACAATTTCATTTCTGATGTCTCTGGCTGTGCTTTCGAAAGGGCAGGAAGAGCCATGGAAAGAGGCTGAAAGACCCCTGTGAGAATTCTCAAATCCAAATTCATAGCGGTAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2870891 286 -   2996164 TGGCTCTAGAATTCTTATGGCAAA-ATAGCTGTCATAGAATCCAACCAGAATGAAA-GTCCAGGGCCTGCCTTGA--CCGCCCTGGGCACACCTGACTC-TGATGGGGTTGCC-AAAATGTAGCTT-GGCATTTACAAAAGTTGTTTCCAAAGATTGCATCAAAGTCCAAAAGAAGTATGTACAATTTCATTTCTGATGTCTCTGGCTGTGCTTTCGAAAGGGCAGGAAGAGCCATGAAAAGAGGCTGAAAGGCCCCTGTGGGAATTCTCAAATCCCTTTTCATAGTGGTAAC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     619177 286 +    766320 TGGCTCTAGAATTCTTATGGCAAA-ATAGCTGTCATAGAATCCAACCAGAATGAGA-GTCCAGGGCCTGCGTTGA--CCGCCCTGGGCACACCTGACTC-TGATGGGGTTGCC-AAAATGTAGCTT-GGCATTTACAAAAGTTATTTCCAAAGATTGCATCAAAGTCCAAAAGAAGTATGTACAATTTCATTTCTGATGTCTCTGGCTGTGCTTTCGAAAGGGAAGGAAGAGCCATGGAAAGAGGCTGAAAGGCCCCTGTGGGAATTCTCAAACCCCTTTTCATAGTGGTAAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29075031 285 -  71996105 tggctcTAGAATTCTTATGGCAAA-ATAGCTGTCATAGAATCCAACCAGAATG-AG-GTCCAGGACCTGCGCTGA--CCGCCCTGGGCACACCTGACTC-TGATGGGGTTGCC-AAAATGTAGCTT-GGCATTTACAAAAGTTATTTCCAAAGATTGCATCAAAGTCCAAAAGAAGTATGTACAATTTCATTTCTGATGTCTCTGGCTGCGCTTTCGAAAGGGCAGGAAGAGCCATGGAAAGAGGCTGAAAGGCCCCTGTGGGAATTCTCAAATCCCTTTTCATCGTGGTAAC
i chlSab2.chr17            I 181 C 0
s manLeu1.NW_012099233v1     289939 286 +    290775 TGGCTCTAGAATTCTTATGGCAAA-ATAGCTGTCATAGAATCCAACCAGAATG-AGAGTCCAGGGCCTGCGTTGA--TCGCCCTGGGCACACCTGACTC-TAATGGGGTTGCC-AAAATGTAGCTT-GGCGTTTACAAAAGTTGTTTCCAAAGATTGCATCAAAGTCCAAAAGAAGTATGTACAATTTCATTTCTGATGTCTCTGGCTGTGCTTTCGAAAGGGCAGGAAGAGTCATGAAAAGAGGCTGAAAGGCCCCTGTGGGAATTCTCAAACCCCTTTTCATAGTGGTAAC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2727681 286 -   3067355 TGGCTCTAGAATTCTTATGGCAAA-ATAGCTGTCATAGAATCCAACCAGAATGAGA-GTCGAGGGCCTGTGTTGA--CCGCCCTGGGCACACCTGACTC-TGATGGGGTTGCC-AAAATGTAGCTT-GGCATTTACAAAAGTTATTTCCAAAGATTGCATCAAAGTCCAAAAGAAGTACGTACAATTTCATTTCTGATGTCTCTGGCTATGCTTTCAAAAGGGCAGGAAGAGCCATTGAAAGAGGCTGAAAGGCCCCTGTGGGAATTCTCAAATCCCTTTTCATAGCGGTAAC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30103906 283 + 171630274 TGGCTCTAGAATTCTTATGGTGAATACAGTTCTCATAGAATCCAACCAGAATGAGA-GTCCAGGGCCTGAGTTGA--CTGTCCTGGGCACACTCGACTG-TGACGGAGTTGCCAAAAATGTAACTTCGGCACTTGCAGAAA----TTTCAATGATTGTCAAAAACACC-AAATACTTGTGTACAATTTCACTTCTGATGTCTGTGGCTGTGCTTT-GAAAGGGCAGAAAGAGCCATGGAAAGAGGCTGAAAGACTCCTCTGGGAATTCTCAAGTCCTTTTTCATAGCAGTAAC
i calJac3.chr4             C 0 I 1649
s saiBol1.JH378388            43498 285 -    110772 TGGCTCTAGAATTCTCACTGCAGATACGTTTCGCACAGAATCCAACCAGAATGAGA-GTCCAGGGCCTGAGCTGACTCTGCCCTGGGCACACCTGACTC-TGATGGA-TTGCC-AAAATGTAGCTG-GGCATTTACAAACATTCTTTCCAAAGATTGCAGCAAAGTCCAAAAGAGTTATGGATAATTTCATTTCTGACTTC--TGACT-TGCTTTGGAAAGTTCAGGAAGAGCCATGGAAAGAGGCTGGAAGGCTTCTCTGGGAATTCTCAAATCCCTTTTCATAGCAGTAAC
i saiBol1.JH378388         C 0 C 0
s cebCap1.NW_016107755v1     311696 283 -   1771730 TGGCTCTAGAATTCTCACTGTAAATACGATTCTCACAGAATCCAACTAGAAT--GA-GTCCAGGGCCTGAGTTGACTCTGCCCTGAGCACAACTGACTT-TGATGGGGTTGCC-AAAATGTAGCTT-GGCATTTACAAACGTTCTTTCCAAAGATTGCAGCAAAGTCCAAAAGAGATATGGATAATTTCATTTCTGACGTC--TGGCT-TGCTTT-CGAAGATCAGGAAGAGCCATGGAAAGAGGCTGAAATGCTTCTCTGGGAATTCTCAAATCCCTTTTCATAGCAGTAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     383712 286 -    457564 TGGCTCTAGAATTCTCACTGCAAATACGGTTCTCACAGAATCGAACCAGCATGAGA-GTCCAGGGCCTGAGTTGACTCTGCCCTGGGCACAACTGACTC-TGATGGAGTTGCC-AAAATGTAGCTT-GGCATTTACAAACATTCTTTCCAAAGATTGCAGCAAAGTCCAAAAGAGTTATGGATAATTTCATTTCTGACGTC--TGGCT-TGCTTTCGAAAGATCAGGAAGAGCCATGGAAAGAGGCTGAAAGGCTTCTCTGGGAATTCTCAAATCCCTTTTCATAGCAGTAAC
i aotNan1.NW_018509740v1   C 0 C 0

a score=1283242.000000
s hg38.chr6_GL000254v2_alt   968531 155 +   4827813 TTGGACCTAGACAGCAAA-GCCTGAAAGACACAGGTAGAAGGATCGCGAGGCGCAGCCCTCCCTTCTGATCAGCACAGGTATGGCTGTCTGGGCGCTTTTGCCCCTCTGTGTTCAGCAGGATGGACTCTGCAGTGAGGCGCAACCCCTGTCTCCCC
s panTro5.chr6             29931285 155 + 175400573 TTGGACCTAGAGAGCAAA-GCCTGAAAGACACAGGTAGAAGGACCGCGAGGCGCAGCCCTCCCTTCTGATCAGCATGGGCATGGCTGTCTGGGCGCTTTTGCCCCTCTGTGTTCAGCAGGATGGACTCTGCAGTGAGGCGCAGCCCCTGTCTCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30164897 155 + 173848474 TTGGACCTAGAGAGCAAA-GCCTGAAAGACACAGGTAGAAGGACCGCGAGGCGCAGCCCTCCCTTCTGATCAGCATGGGCATGGCTGTCTGGGCGTTTTTGCCCCTCTGTGTTCAGCAGGATGGACTCTGCAGTGAGGCGCAGCCCCTGTCTCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5964915 155 +   6154872 TTGGACCTAGACAGCAAA-GCCTGAAAGACACAGGTAGAAGGATCGCGAGGCGCAGCCCTCTCTTCTGATCAGCACGGGCATGGCTGTCTGGGCGCTTTTGCCCCTCTGTGTTCAGCAGGATGGACTCTGCAGTGAGGCGCAGCCCCTGTCTCCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74670726 154 + 122973662 TTGGACCTAGACAGCAAA-GCTTGAAAGACACAGGTAGAAGGATCGAGAGGCGCAGCCCTCCCTTCTGATCAGCATGGGCATGGCTGTCTGGACGCTTTTGCCCCTCTGTGTTCAGCA-GATGGACTCTGCAGTGAGGCGCAGCCCCTGTCTCCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30158537 156 + 172585720 TTGGACCTAGACAGCACATGCCTGAAAGACACAGGTAGAAGGATCCGGAGGCGCAGTCCTCCCCTCCGATCAGAACGGGCATGGCTGTCTAGGATTTTTTGCCCCTCTGTGTTCAGCAGGATGGACTCTGTAGTGAGGCGCAGCCCGTGCCTCCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29821986 156 - 170955103 TTGGACCTAGACAGCACATGCCTGAAAGACACAGGTAGAAGGATCCGGAGGCGCAGTCCTCCCCTCCGATCAGCACGGGCATGGCTGTCTAGGATTTTTTGCCCCTCTGTGTTCAGCAGGATGGACTCTGTAGTGAGGCGCAGCCCGTGCCTCCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2871177 156 -   2996164 TTGGACCTAGACAGCAAATGCCTGAAAGACACAGGTAGAAGGATCGGGAGGCGCAGTCCTCCCCTCTGATCAGCACGGGCATGGCTGTCTGGGCGTTTTTGCCCCTCTGTGTTCAGCAGGATGGACTCTGTAGTGAGGCGCAGCCCCTGCCTCCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     619463 156 +    766320 TTGGACCTAGACAGCAAATGCCTGAAGGACACAGGTAGAAGGATCGGGAGGCGCAGTCCTCCCCTCTGATCAGCACGGGCATGGCTGTCTGGGCGTTTTTGCCCCTCTGTGTTCAGCAGGATGGACTCTGCAGTGAGGCGCAGCCCCTGCCTCCCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29075316 156 -  71996105 TTGGACCTAGACAGCAAATGCCTGAAAGACACAGGTAGAAGGATCGGGAGGCGCAGTCCTCCCCTCTGATCAGCATGGACATGGCTGTCTGGGCGTTTTTGCCCCTCTGTGTTCAGCAGGATGGACTCTGTAGTGAGGCGCAGCCCGTGCCTCCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     290225 156 +    290775 TTGGACCTAGACAGCAAATGCCTGAAAGACACAGGTAGAAGGATCGGGAGGCGCAGTCCTCCCCTCTGATCCGCACGGGCATGGCTGTCTGGGCGTTTTTGCCCCTCTGTGTTCAGCAGGATGGACTCTGCGGTGAGGCGCAGCCCCTGCCTCCCC
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2727967 156 -   3067355 TTGGACCTAGACAGCAAATGCCTGAAAGACACAGGTAGAAGGATCGGGAGGCGCAGTCCTCCCCTCTGATCAGCACGGGCATGGCTGTCTGGGTGCTTTTGCCCCTCTGTGTTCAGCAGGATGGACTCTGGAGTGAGGCGCAGCCCCTGCCTCCCC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378388            43783 152 -    110772 TTGCACCTAGAGAGCAAA-GGTTGAAAGACACAGGGAGAAGGATCTGGAGGCGCAGCCCTCCCTTCTGATCAGCAC--ACAGGGCTGTCTGGGCACTTTT-CCCTTCTGTGTTCAGCAGGAGCAACTCTGCAGTGAGGCACAGCCCCTGTCTCCCC
i saiBol1.JH378388         C 0 I 39
s cebCap1.NW_016107755v1     311979 148 -   1771730 TTGCACCTAGAGAGCAAA-GGCTGAAAGACAC----AGAAGGATCTGGAGGCGCAGCCCTCCCTTCTGATCAGCAC--GCAGGGCTGTCTGGGTGCTTTT-CCCTTCTGTGTTCAGCAGGATCAACTCTGCAGTGAGGCACAGCCCCTGTCTCCCC
i cebCap1.NW_016107755v1   C 0 I 66
s aotNan1.NW_018509740v1     383998 153 -    457564 TTGGACCTAGAGAGCAAA-GCCTGAAAGACACAGGGAGAAGGATCTGGAGGCGCAGCCCTCCCTTCTGATCAGCGC-GGCAGGGCTGTCTGGGCGCTTTC-TCCCTCTGTGTTCAAGAGGATCAACTCTGCAGGGAGGCACAGCCCCTGTCTCCCC
i aotNan1.NW_018509740v1   C 0 I 67
e calJac3.chr4             30104189 1649 + 171630274 I

a score=181454.000000
s hg38.chr6_GL000254v2_alt   968686 31 +   4827813 ACTGCCCCAGATCAGAAGCA--TGTTTCCTTAT
s panTro5.chr6             29931440 31 + 175400573 ACTGCCCCACATCAGAAGCA--TGTTTCCTTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30165052 31 + 173848474 ACTGCCCCACATCAGAAGCA--TGTTTCCTTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5965070 31 +   6154872 ACTGCCCCACATCAGAAGCA--TGTTTCCTTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74670880 33 + 122973662 ACTGCCCCACGTCAGAAGCATCTGTTTCCTTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30158693 33 + 172585720 ACTGCCCCACGTCAGAAGCATCTGTGTCCTTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29822142 33 - 170955103 ACTGCCCCACGTCAGAAGCATCTGTGTCCTTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2871333 33 -   2996164 ACTGCCCCACGTCAGAAGCATCTGTTTCCTTAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     619619 33 +    766320 ACTGCCCCACGTCAGAAGCATCTGTTTCCTTAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29075472 33 -  71996105 ACTGCCCCACGTCAGAAGCATCTGTTTCCTTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     290381 33 +    290775 ACTCTCGCACGTCAGAAGCATCTGTTTCCTTAT
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2728123 33 -   3067355 ACTGCCCCACGTCAGAAGCATCTGTTTCCTTAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378388            43974 28 -    110772 ACTATCCAATGTCAGAAGCATCTATTTC-----
i saiBol1.JH378388         I 39 C 0
e aotNan1.NW_018509740v1     384151 67 -    457564 I
e cebCap1.NW_016107755v1     312127 66 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=832635.000000
s hg38.chr6_GL000254v2_alt   968717 98 +   4827813 CTTGTTTTCCACACACTCCTTTTCTTTTTCTGTCTTGTGACCACGAATAGAATAGACAGGCAAGGTCCTGTAAGACCAGGTAAAAGATGTTACTGATg
s panTro5.chr6             29931471 98 + 175400573 CTTGTTTTCCACACACTCCTTTTCTTTTTCTGTCTTATGACCATGAATAGAATAGACAGGCAAGGTCCTGTAAGACCAGGTAAAAGATGTTACTGATg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30165083 98 + 173848474 CTTGTTTTCCACACACTCCTTTTCTTTTTCTGTCTTATGACCATGAATAGAATAGACAGGCAAGGTCCTGTAAGACCAGGTAAAAGATGTTACTGATg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5965101 98 +   6154872 CTTGTTTTCCACACACTCCTTTTCTTTTTCTGTCTTGTGACCACGAATAGAATAGACAGGCAAGGTCTTGTAAGACCAGGTAAAAGATGTTACTGATg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74670913 81 + 122973662 CTTGTTTTCCACACACTCCTTTCCTTTTTCTGTCTTATGACCATGAATAAAATAGACAGGCAAGGTCCTATAAGACCaggt-----------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30158726 98 + 172585720 CTTGTTTTCCACACACTCCTTTCCTTTTTCCGTCTTGTGGCCACGAATAGAATAGACAGGCAAGGTCCTATAAGACCAGGTAAAAGATGTTACTGATg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29822175 98 - 170955103 CTTGTTTTCCACACACTCCTTTCCTTTTTCCGTCTTGTGGCCACGAATAGAATAGACAGGCAAGGTCCTATAAGACCAGGTAAAAGATGTTACTGATg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2871366 98 -   2996164 CTTGTTTTCCACGCACTCCTTTCCTTTTTCTATCTTGTGACCACGAATAGAATAGACAGGCAAGGTCCTATAAGACCAGGTAAGAGATGTTACTGATg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     619652 98 +    766320 CTTGTTTTCCACACACTCCTTTCCTTTTTCTGTCTTGTGACCACGAATAGAATAGACAGGCAAGGTCCTATAAGACCAGGTAAGAGATGTTACTGATg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29075505 98 -  71996105 CTTGTTTTCCACACACTCCTTTCCTTTTTCTGTCTTGTGACCACGAATAGAATAGACAGGCAAGGTCCTATAAGACCAGGTAAGAGATGTTACTGATg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012099233v1     290414 98 +    290775 CTTGTTTTCCACGCACTCCTTTCCTTTTTGTATCCTGTGACCACGAATAGAATAGACAGGCAAGGTCCTATAAGACCAGGTAAAAGATGTTACTGATg
i manLeu1.NW_012099233v1   C 0 C 0
s colAng1.NW_012115566v1    2728156 98 -   3067355 CTTGTTTTCCACACACTCCTTTCCTTTTTCTATCTTGTGACCATGAATAGAATAGACAGGCAAGTTCCTATAAGACCAGGTAAGATATGTTACTGATg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378388            44002 96 -    110772 CTTGTTTTCCACACACTCCTTTCCTT--TCTGTCTTGTGACCGCTAATGCAATAGACAGGCAAGTTCCTATAAGACCTGGTGAAAGACGTTACTGATG
i saiBol1.JH378388         C 0 I 2
s cebCap1.NW_016107755v1     312193 98 -   1771730 CTTGTTTTCCACACACTCCTTTCCTTTCTCTGTCTTGTGACCGCTAATGCAATAGACAGGCAAGTTCCTATAAGACCAGGTGAAAGATGTTACTGATG
i cebCap1.NW_016107755v1   I 66 I 118
s aotNan1.NW_018509740v1     384218 98 -    457564 CTTGTTTTCCACACACTCCTTTCCTTTTTCTGTCTTGTGACCGCTAACGCAATAGACAGGCAAGTTCCTATAAGACCAGGTGAAAGATGTTACTGATG
i aotNan1.NW_018509740v1   I 67 I 118
e calJac3.chr4             30104189 1649 + 171630274 I

a score=1334985.000000
s hg38.chr6_GL000254v2_alt   968815 267 +   4827813 cactttggaaggctgaggtgggcgaatca---caaggtcaggagtttgagaccagcctggccaacattgtgaaaccccatctcta-----caaaaaa-aatcaaaataaaaa--tacaaaatttagccgggcgtggtggcatgtgcctataatcccagctactcaggaggctgaggcaggataatcgcttgaacccgggaggtggaggctacagtgagcagagattgtgacattgcactccagcctgggcgacagagtgagactctgtctcaaagaaa
s panTro5.chr6             29931569 265 + 175400573 cactttggaaggctgaggtgggcgaatca---cgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctcta-----caaaaaa-aataaaaatacaaa--tacaaaaattagccgggcgtggtggcatgtgcctataatctcagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggtggaggctacagtgagcagagattgtgccattgcactccagcctgggcgacagagtgagactctgtctcaaa--aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30165181 265 + 173848474 cactttggaaggctgaggtgggcgaatca---cgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctcta-----caaaaaa-aataaaaatacaaa--tacaaaaattagccgggcgtggtggcatgtgcctataatctcagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggtggaggctacagtgagcagagattgtgccattgcactccagcctgggcgacagagtgagactctgtctacaa--aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5965199 267 +   6154872 cactttggaaggctgaggtgggcgaatca---caaggtcaggagtttgagaccagcctggccaacatggtgaaaccccatctcta-----caaaaaa-aataaaaataaaaa--tacaaaatttagccgggcgtggtggcatgtgcctataatcccagctactcaggaggctgaggcaggataatcgcttgaacccgggaggtggaggctacagtgagcagagattgtgacattgcactccagcctgggcgacagagtgagactctgtctcaaagaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74670994 248 + 122973662 -------------tgaggcaggtgaatca---cgaggtcaagagttcgagaccagcctggccaacatggtgaaacctcgtctcta-----caaaaaacaataagaa---------acaaaaattagctgggcaaggtggcaggcacctataatcccagctactaaggaggctgaggcaggagaatcgctttaacccatgaggtggaggctgcagtgagcagagatcatgccattgcactccagcctgggtgacagagtgagactccatctcaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30158824 256 + 172585720 tactttggaaggctgaggcgggcgaatcg---tgaggtcaggagttcgagaccagcctggccaacatggtgaaacctcgtctcta-----ccaaaaa-aaaaaa-------------aaaaattaaccaggtatggtggtatgcgcctataatcccagctactcagaaggctgaggcaggagaatcgcttgaacctgggaggtggaggctgcaatgagcagagatcttgccattgcactccagcctgggtgacagagtgagactccatctcaaaaaaa
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29822273 265 - 170955103 tactttggaaggctgaggcgggcgaatcg---tgaggtcaggagttcgagaccagcctggccaacatggtgaaacctcgtctcta-----ccaaaaa-aaaaaaaaaaaaaaa----aaaaattaaccaggtatggtggtatgcgcctataatcccagctactcagaaggctgaggcaggagaatcgcttgaacctgggaggtggaggctgcaatgagcagagatcttgccattgcactccagcctgggtgacagagtgagactccatctcaaaaaaa
i macFas5.chr4             C 0 I 1
s macNem1.NW_012011356v1    2871464 264 -   2996164 cactttggaaggctgaggcaggcaaatca---cgaggtcaggagttcgagaccagcctggccaacatggtgaaacttcatctct----------aaa-aaaaaaaaaaaaaaattccaaaaattagccaggtgtggtggcatgcacctataatcccagctactcagaaggctgaggcaggagaatcgcttgaacccgggaggtggaggctgcagtgagcagagatcgtgccattgcactccagcctgggtgacagagtgagactctgtctcaaaaaaa
i macNem1.NW_012011356v1   C 0 I 15
s cerAty1.NW_012002711v1     619750 263 +    766320 cactttggaaggctgaggcaggcaaatca---cgaggtcaggagttcgagaccagcctggccaacatggtgaaacttcgtctttt-----tcaaaaa-aaaaaa------aagttccaaaaattagccaggtgtggtggcatgcacctataatcccagctactcagaaggctgaggcaggataatcgcttgaacccgggaggtggaggctgcagtgagcagagatcgtgccattgcactccagtctgggtgacagagtgagactctgtctcaaaaaaa
i cerAty1.NW_012002711v1   C 0 I 9
s chlSab2.chr17            29075603 274 -  71996105 cactttggaaggctgaggcaggcaaatca---tgaggtcaggagttcgagaccagcctggccaacatggtgaaacttcgtctcttaaaaaaaaaaaa-aaaaaaaaaaaaaaattccaaaaattagccaggtgtggtggcatgcacctataatcccagctactcagaaggctgaggcaggagaatcgcttgaacccgggaggtggaggctgcagtgagcagagatcgtgccattacactccagcctgggtgacagagtgagactctgtctcaaaaaaa
i chlSab2.chr17            C 0 I 7
s manLeu1.NW_012099233v1     290512 263 +    290775 cactttggaaggctgaggcaggcaaatca---cgaggtcaggagttcgagaccagcctggccaacatggtgaaacttcgtctctt-----------t-aaaaaaaaaaaaaaattccaaaaattagcccggtgtggtggcatgcacctataatcccagctactcagaaggctgaagcaggagaatcgcttgaacccgggaggtgaaggctgcagtgagcagagatcgtgccattgcactccagcctgggtgacagagtgagactctgtctcaaaaaaa
i manLeu1.NW_012099233v1   C 0 N 0
s colAng1.NW_012115566v1    2728254 265 -   3067355 cactttggaaggttgaggcgggcagatcaaccagaggttaggagttcgagaccagcctggccaacatggtgaaacttcatctcta-----ccaaaaa-aaaaaa-------aattccaaaaattagccaggtgtggtggcatgcacctataatcccagctactcagaaggctgaggcaggagaatcgcttgaacccgggacatggaggctgcagtgagcagagatcgtgccattgcactccagcctgggtgacagagtgagactccgtttcaaaaaaa
i colAng1.NW_012115566v1   C 0 I 1
e saiBol1.JH378388            44098   2 -    110772 I
e aotNan1.NW_018509740v1     384316 118 -    457564 I
e cebCap1.NW_016107755v1     312291 118 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=23676.000000
s hg38.chr6_GL000254v2_alt   969082 12 +   4827813 aaaaaaaaa-----------------GTT
s panTro5.chr6             29931834 12 + 175400573 aaaaaaaaa-----------------GTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30165446 12 + 173848474 aaaaaaaaa-----------------GTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5965466 12 +   6154872 aaaaaaaaa-----------------GTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74671242 29 + 122973662 aaaaaaaaaaaaaaCATGTTACTGATGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30159081 14 + 172585720 --------a-------TGTTACTGATGAT
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29822539 14 - 170955103 --------a-------TGTTACTGATGAT
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2871743 21 -   2996164 -aaaaaaGA-------TGTTACTGATGAT
i macNem1.NW_012011356v1   I 15 C 0
s cerAty1.NW_012002711v1     620022 21 +    766320 -aaaaaaGA-------TGTTACTGATGAT
i cerAty1.NW_012002711v1   I 9 C 0
s chlSab2.chr17            29075884 21 -  71996105 -aaaaaaGA-------TGTTACTGATGAT
i chlSab2.chr17            I 7 C 0
s colAng1.NW_012115566v1    2728520 21 -   3067355 -aaaaaaGA-------TGTTACTGATGAT
i colAng1.NW_012115566v1   I 1 C 0
e saiBol1.JH378388            44098  2 -    110772 I
e aotNan1.NW_018509740v1     384316 118 -    457564 I
e cebCap1.NW_016107755v1     312291 118 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=489131.000000
s hg38.chr6_GL000254v2_alt   969094 130 +   4827813 AGTGAAATCATGATTGTGAAGGAACAATGGCAAATGgagagaaagagcagagagacag--acagagatagatacacacgtacacacacacatagagaAAATGAAT----------------------------------------------------------------------------------------------------atccatccatccatccatccatc----catc--
s panTro5.chr6             29931846 126 + 175400573 AGTGAAATCATGATTGTGAAGGAACAATGGCAAATGgagagaaagagcagagagacag--acagagatagatacacacgtacacacacacatagagaAAATGAAT----------------------------------------------------------------------------------------------------atccatccatccatccatccatc----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30165458 121 + 173848474 -GTGAAATCATGATTGTGAAGGAACAATGGCAAATGgagagaaagagcagag----ag--acagagatagaTACACACGTACACACACACATAGAGAAAATGAAT----------------------------------------------------------------------------------------------------atccatccatccatccatccatc----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5965478 134 +   6154872 AGTGAAATCATGATTGTGAAGGAACAATGGCAAATGgagagaaagagcagagagacag--acagagatagatacacacgtacacacacacatagagaAAATGAAT----------------------------------------------------------------------------------------------------atccatccatccatccatctatccatccatc--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74671271 126 + 122973662 AGTGAAACCATGATTGTGAAGGAACAATGGCAAATGCagagaaagagcagagagacagatatagagatagaTACACACGTACACACACAC--AGAGAAAATGAAT----------------------------------------------------------------------------------------------------atccatccatccatccgtccatc----------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30159095 106 + 172585720 AGTGAAACCATGATTGTGAAGGAACAATGGCAAATGgagagaaagagcagagagacagacatagagatagaTACCCCCGTACACACACAT--AGAGAAAATGAAT------------------------------------------------------------------------------------------------------------------------atc----------
i rheMac8.chr4             C 0 I 8
s macFas5.chr4             29822553 110 - 170955103 AGTGAAACCATGATTGTGAAGGAACAATGGCAAATGGagagaaagagcagagagacagacatagagatagaTACCCCCGTACACACACAT--AGAGAAAATGAAT--------------------------------------------------------------------------------------------------------------------atccatc----------
i macFas5.chr4             C 0 I 8
s macNem1.NW_012011356v1    2871764 226 -   2996164 AGTGAAACCATGATTGTGAAGGAACAATGAAAAATGgagagaaagagcagagagacagacatagagatagatatCCCTGTATACACACAT--AGAGAAAATGAATatccatccatccctccatccatccatccatccatccatccatccatcagtccatccatccacccatccatccatccatccatccatccatccatccatccatccatcagtccatccatccatc----------
i macNem1.NW_012011356v1   C 0 I 8
s cerAty1.NW_012002711v1     620043 112 +    766320 CGTGAAACCATGATTGTGAAGGAACAATGGAAAACGgagagaaagagcagagagacagacatagagatagatatCCCTGTATACACACATACAGAGAAAATGGAT--------------------------------------------------------------------------------------------------------------------ATCCATT----------
i cerAty1.NW_012002711v1   C 0 I 8
s chlSab2.chr17            29075905 132 -  71996105 AGTGAAACCATGATTGTGAAGGAACAATGGAAAATGgagagaaagagcagagagacagacatagagatagatatCCCTGTACACACACATACAGAGAAAATGGAT------------------------------------------------------------------------------------------------atccatccatcaatccatccatccatc----------
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2728541 124 -   3067355 AGTGAAACCATGATTGTGAAGGAACAATGGAAAACG----GAAAGAGCAGAGAGACAGACAT----ATAGATATCCCTGTACACACACATACAGAGAAAATGGAT------------------------------------------------------------------------------------------------atccgtccatcaatccatccatccatc----------
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378388            44100 112 -    110772 AGTGAAGACATGATTGTGAAGGGACAATGGCAGATGAAGAGAAGGAGCAGAGAGATAGACATAGAGATAGGTACACACGTATGCACACAC--AGAGAAAATGAGT--------------------------------------------------------------------------------------------------------------------ATCCATC--------TC
i saiBol1.JH378388         I 2 C 0
e aotNan1.NW_018509740v1     384316 118 -    457564 I
e cebCap1.NW_016107755v1     312291 118 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=138009.000000
s hg38.chr6_GL000254v2_alt   969224 34 +   4827813 tatccatccatccatccatctacccatccaccca
s panTro5.chr6             29931972 34 + 175400573 tatccatccatccatccatctacccatccaccca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30165579 34 + 173848474 tatccatccatccatccatctacccatccaccca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5965612 34 +   6154872 catctatccatccatccatctacccatccaccca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74671397 22 + 122973662 ------------catccatccatccatccaccca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30159209 34 + 172585720 catccatccatccatccatccatccatccaccca
i rheMac8.chr4             I 8 C 0
s macFas5.chr4             29822671 34 - 170955103 catccatccatccatccatccatccatccaccca
i macFas5.chr4             I 8 C 0
s macNem1.NW_012011356v1    2871998 34 -   2996164 catccatccatccatccatccatccatccaccca
i macNem1.NW_012011356v1   I 8 C 0
s cerAty1.NW_012002711v1     620163 34 +    766320 CGtccatccatccatccatccatccatccaccca
i cerAty1.NW_012002711v1   I 8 C 0
s chlSab2.chr17            29076037 14 -  71996105 --------------------catccatacaccca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      12452 34 +    119286 catcaatccatccatccatccatccatacaccca
i manLeu1.NW_012101411v1   N 0 C 0
s colAng1.NW_012115566v1    2728665 34 -   3067355 catccatccatccatccatccatccatccatcca
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378388            44212  4 -    110772 --------------------TGTC----------
i saiBol1.JH378388         C 0 C 0
e aotNan1.NW_018509740v1     384316 118 -    457564 I
e cebCap1.NW_016107755v1     312291 118 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=713770.000000
s hg38.chr6_GL000254v2_alt   969258 99 +   4827813 --------tccacccatccaCCTTTCTATCTCCTTGCAAGGTAGGTTCATCAACACTTTTACATTTATGCCCCAGCAAAAATC-TTTTTTTGGCTCACAACTGCCCTC
s panTro5.chr6             29932006 91 + 175400573 --------tccaCT--------TTTCTATCTCCTTGCAAGGTAGGTTCATCAACACTTTTACATTTATGCCCCAGCAAAAATC-TTTTTTTGGCTCACACCTGCCCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30165613 91 + 173848474 --------tccaCT--------TTTCTATCTCCTTGCAAGGTAGGTTCATCAACACTTTTACATTTATGCCCCAGCAAAAATC-TTTTTTTGGCTCACACCTGCCCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5965646 91 +   6154872 --------tccaCC--------TTTCTATCTCCTTGCAAGGTAGGTTCATCAACACTTTTACATTTATGCCCCAGCAAAAATC-TTTTTTTGGCTCACACCTGCCCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74671419 91 + 122973662 --------tccaCC--------TTTCTATCTCCTTGCAAGGTAGGTTCATTAACACTTTTACATTTATGCTCTAACAAAAATC-TTTCTTTGGCTCACACCTGCCCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30159243 92 + 172585720 --------tccaCC--------TTTCTATCTCCTTGCAAGGTAGGTTCACCAAAACTTTTACATTTATGCCCCAACAAAAATATATTTTTTGGCTCACATCTGCCCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29822705 92 - 170955103 --------tccaCC--------TTTCTATCTCCTTGCAAGGTAGGTTCACCAAAACTTTTACATTTATGCCCCAACAAAAATATATTTTTTGGCTCACATCTGCCCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2872032 88 -   2996164 --------tccaCC--------TTTCTATCTCCTTGCAAGGTAAGTTCACCAACACTTTTACATTTATGCCCCAACAAAA----TTTTTTTGGCTTACATCTGCCCTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     620197 90 +    766320 --------tccaCA--------TTTCTACCTCCTTGCAAGGTAAGTTCACCAACACTTTTACATTTATGCCCCAACAAAA--TTTTTTTTTGGCTCACATCTGCCCTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29076051 89 -  71996105 --------tccaCC--------TTTCTATCTCCTTGCAAGGTAGGTTCACCAACACTTATACATTTATGCCCCAACAAAAA---ATTTTTTGGCTTACATCTGCCCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      12486 89 +    119286 --------tccaCC--------TTTCTATCTCCTTGCAAGGTAAGTTCACCAACACTTTTACATTTATGCCCCAACAAAAA---ATTTTTTGGCTCACATCTGCCCTC
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2728699 89 -   3067355 --------ccatTC--------ATTCTATCTCCTTGCAAGGTAAGTTCACCAACACTTTTACATTTATGCCCCAACAAAAT---ATTTTTTGGCTCACATCTGCCCTC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378388            44216 98 -    110772 TCCACCCA-GCACC--------TTTCCATCTCCTTGCAAGATAGGTACATCAACACTTTTACATTTATGCCCCAACAAAAATT-GTTTTTTGGCTCACACCTGCCCTC
i saiBol1.JH378388         C 0 N 0
s cebCap1.NW_016107755v1     312409 99 -   1771730 TCCACCCACCCACC--------TTTCCATCTCCTTGCAAGATAGGTACATCAACACTTTTACATTTATGCCCCAACAAAAATT-ATTTTTTGGCTCACACTTGCCCTC
i cebCap1.NW_016107755v1   I 118 C 0
s aotNan1.NW_018509740v1     384434 99 -    457564 TCCACCCAGCCACC--------TTTCCATCTCCTTGCAAGATAAGTACATCAACACTTTTACATTTATGCCCCAGCAAAAATT-GCTTTTTGGCTCACATCTGCCCTC
i aotNan1.NW_018509740v1   I 118 C 0
e calJac3.chr4             30104189 1649 + 171630274 I

a score=9075765.000000
s hg38.chr6_GL000254v2_alt   969357 1187 +   4827813 CttcatccagccaactgacatatttgctgaggtcttgccacgtgccgcactgggtgctgagcattggagtctaaacaggaacagacccctgggatgcactcccgtggggcccttcactgtcccgtCCCTGGCTGTGAGACATCCTCATCTCCCTGAGGCTCTTGTTTCTGGTCACTGGGAAAAGTCCCTGGCCCACCTCTCTATTGATACCTGGGAGACT----CTATCGCTACTTTGAATAAAGCACTGATTTTCAGCATTTATTCTGTATCCA-CACTTACTAATGCCCTTTCAACGATTTTCTCATTTAGAAGTTGTTACAAACGGG--AGGGGTTATAACCTTAGGCACGTTGTTTAAGAGAATTGTAAAAATAAGGAAACATGATGGCAATGGGGTTTTCTGCTTTCTCCCAGAACACTTCATATTCATTTTCTCACCTGTGTTTGGTTGGTTGCAAGGTGGCTTCCACA-CCCCCAAGTTTATTTCAAGTAGCAGAAACACTTGCTTAGAAAACAAGTACTTTGGGAAATGCAGGGTCTCAGCCTCTGTCCTCAGGACTCCACACATCAGAAAGACATGTGCGTCTCCTGCCACAATCCTGGAGGTGCCCGTGGACTGCAGGTTCGCTCCTCACTGACTTTACTCATGTCCTACTGGAAAAGGATGGAGCTGCTAGAAATGTCCCAATGGCTTGGAACACTCAATTTCTCTGTGTGCACTGCAAGCAAACTGACAGTTTGACTTTTCAATTCTATTCAACACCTGAAAAT-AAACTGAATTTTCAGTATATTTCCTTCCAGAGAGTAAACTGAAAAGGGAACCTTTCTAAATTC--AGTTATGATTTCCTGAAACATCGAAGAAGGCAAATGTGGGGGCCCTTAAAGACAAGAGAATTCTCTGACCTCAAATTTCATGTGGCAGCTGTAAGGTGGAGCTGGCAGCATCTGTCCCCACCTCTGGGTACACAGCAGAATGTGCCAGCTTTAGGGACCCCGGAGGACACAGCCGCACA-GTGTCCGGGGGCATCCAGCAAACCCTCAGGAAGGACTCGATCCACGCAGGAGCCTCCTTAAGCAACTTCTCCCTGAAGAAACCCTGAAGTCTTAGAAATCCATAAAGAAAAAAGATATTCATGTCTCTGATAAAGAAAA-GAAATGTCAGCAATCCAGCACCGAGAAGGGAAGCTACG
s panTro5.chr6             29932097 1187 + 175400573 CttcatccagccaactgacatatttgctgaggtcttgccacgtgccgcactgggtgctgagcattggagtctaaacaggaacagacccCTGGGATGCACTCCCGTGGGGCCCTTCACTGTACCGTCCCTGGCTGTGAGACATCCTCATCTCCCTGAGGCTCTTGTTTCTGGTCACTGGGAAAAGTCCCTGGCCCACCTCTCTGTTGATACCTGGGAGACT----CTATCACTACTTTGAATAAAGCACTGATTTTCAGCATTTATTCTGTATCCA-CACTTACTAATGCCCTTTCAACGATTTTCTCATTTAGAAGTTGTTACAAACGGG--AGGGGTTATAACCTTAGGCACATTGTTTAAGAGAATTGTAAAAATAAGGAAACATGATGGCAATGGGCTTTTCTGCTTTCTCCCAGAACACTTCATATTCATTTTCTCACCTGTGTTTGGTTGGTTGCAAGGTGGCTTCCACA-CCCCCAAGTTTATTTCAAGTAGCAGAAACACTTGCTTAGAAAACAAGTACTTTGGGAAATGCAGGGTCTCAGCCTCTGTCCTCAGGACTCCACACATCAGAAAGACATGTGCGTCTCCTGCCACAATCCTGGAGGTGCCCGTGGACTGCAGGTTCGCTCCTCACTGATTTTACTCATGTCCTACTGGAAAAGGATGAAGCTGCTAGAAATGTCCCAATGGCTTGGAACACTCAATTTCTCTGTGTGCACTGCAAGCAAACTGACAGTTTGACTTTTCAATTCTATTCAATACCTGAAAAT-AAACTGAATTTTCAGTATATTTCCTTCCAGAGAGTAAACTGAAAAGGGAACCTTTCTAAATTC--AGTTATGATTTCCTGAAACATCGAAGAAGGCAAATGTGGGGGCCCTTAAAGACAAGAGAATTCTCTGACCTCAAATTTCATGTGGCAGCTGTAAGGTGGAGCTGGCAGCATCTGTCCCCACCTCTGGGTACACAGCAGAATGTGCCAGCTTTAGGGACCCCGGAGGACACAGCCGCACA-GTGTCCGGGGGCATCCAGCAAACCCTCAGGAAGGACTCGGTCCACGCAGGAGCCTCCTTAAGCAACTTCTCCCTGAAGAAACCCTGAAGTCTTAGAAATCCATAAAGAAAAAAGATATTCATGTCTCTGATAAAGAAAA-GAAATGCCAGCAATCCAGCACCGAGAAGGGAAGCTACG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30165704 1187 + 173848474 CttcatccagccaactgacatatttgctgaggtcttgccacgtgccgcactgggtgctgagcattggagtctaaacaggaacagacctctgggatgcactcccgtggggcccttcactgtcccgtCCCTGGCTGTGAGACATCCTCATCTCCCTGAGGCTCTTGTTTCTGGTCACTGGGAAAAGTCCCTGGCCCACCTCTCTGTTGATACCTGGGAGACT----CTATCACTACTTTGAATAAAGCACTGATTTTCAGCATTTATTCTGTATCCA-CACTTACTAATGCCCTTTCAACGATTTTCTCATTTAGAAGTTGTTACAAACGGG--AGGGGTTATAACCTTAGGCACATTGTTTAAGAGAATTGTAAAAATAAGGAAACATGATGGCAATGGGCTTTTCTGCTTTCTCCCAGAACACTTCATATTCATTTTCTCACCTGTGTTTGGTTGGTTGCAAGGTGGCTTCCACA-CCCCCAAGTTTATTTCAAGTAGCAGAAACACTTGCTTAGAAAACAAGTACTTTGGGAAATGCAGGGTCTCAGCCTCTGTCCTCAGGACTCCACACATCAGAAAGACATGTGCGTCTCCTGCCACAATCCTGGAGGTGCCCGTGGACTGCAGGTTCGCTCCTCACTGACTTTACTCATGTCCTACTGGAAAAGGATGAAGCTGCTAGAAATGTCCCAATGGCTTGGAACACTCAATTTCTCTGTGTGCACTGCAAGCAAACTGACAGTTTGACTTTTCAATTCTATTCAATACCTGAAAAT-AAACTGAATTTTCAGTATATTTCCTTCCAGAGAGTAAACTGAAAAGGGAACCTTTCTAAATTC--AGTTATGATTTCCTGAAACATCGAAGAAGGCAAATGTGGGGGCCCTTAAAGACAAGAGAATTCTCTGACCTCAAATTTCATGTGGCAGCTGTAAGGTGGAGCTGGCAGCATCTGTCCCCACCTCTGGGTACACAGCAGAATGTGCCAGCTTTAGGGACCCCGGAGGACACAGCCGCACA-GTGTCCGGGGGCATCCAGCAAACCCTCAGGAAGGACTCGGTCCACGCAGGAGCCTCCTTAAGCAACTTCTCCCTGAAGAAACCCTGAAGTCTTAGAAATCCATAAAGAAAAAAGATATTCATGTCTCTGATAAAGAAAA-GAAATGCCAGCAATCCAGCACCGAGAAGGGAAGCTACG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5965737 1187 +   6154872 CttcatccagccaactgacatatttgctgaggtcttgccacttgccgcactgggtgctgagcattggagtctaaacaggaacagacccccgggatgcactcccgtggggcccttcactgtcccgtCCCTGGCTGTAAGACATCCTCATCTCCCTGAGGCTCTTGTTTCTGGTCACTGGGAAAAGTCCCTGGCCCACCTCTCTATTGATACCTGGGAGACT----CTATCGCTACTTTGAATAAAGCACTGATTTTCAGCATTTATTCTGTATCCA-CACTTACTAATGCCCCTTCAACGATTTTCTCATTTAGAAGTTGTTACAAACGGG--AGGGGTTATAACCTTTGGCACGTTGTTTAAGAGAATTGTAAAAATAAGGAAACATGATGGCAATAGGCTTTTCTGCTTTCTCCCAGAACACTTCATATTCATTTTCTCACCTGTGTTTGGTTGGTTGCAAGGTGGCTTCCACA-CCCCCAAGTTTATTTCAAGTAGCAGAAACACTTGCTTAGAAAACAAGTACTTTGGGAAATGCAGGGTCTCAGCCTCTGTCCTCAGGACTCCACACATCAGAAAGACATGTGCGTCTCCTCCCACAATCCTGGAGGTGCCCGTGGACTGCGGGTTCGCTCCTCACTGACTTTACTCATGTCCTACTGGAAAAGGATGGAGCTGCTAGAAATGTCCCAATGGCTTGGAACACTCAATTTCTCTGTGTGCACTGCAAGCAAACTGACAGTTTGACTTTTCAATTCTATTCAATACCTGAAAAT-AAACTGAATTTTCAGTATATTTCCTTCCAGAGAGTAAACTGAAAAGGGAACCTTTCTAAATTC--AGTTATGATTTCCTGAAACATCGAAGAAGGCAAATATGGGGGCCCTTAAAGACAAGAGAATTCTCTGACCTCAAATTTCATGTGGCAGCTGTAAGGTGGAGCTGGCAGCATCTGTCCCCACCTCTGGGTACACAGCAGAATGTGCCAGCTTTAGGGACCCCGGAGGACACAGCTGCACA-GTGTCCGGGGGCATCCAGCAAACCCTCAGGAAGGACTCGGTCCACGCAGGAGCCTCCTTAAGCAACTTCTCCCTGAAGAAACCCTGAAGTCTTAGAAATCCATAAAGAAAAAAGATATTCATGTCTCTGATAAAGAAAA-GAAATGCCAGCAATCCAGCACCGAGAAGGGAAGCTACG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74671510 1188 + 122973662 CttcatccagccaactgacgtatttgctgaggtcttgccacgtgccgcactgggtgctgagcgttggagtctgaacaggaacagacccctgggatgcactcccatggggcccttcactgtcccgtCCCTGGCTGTGAGACATCCTCATCTCCCTGAGGCTCTTGTTTCTGGTCTCTGGGAAAAGTCCCTGGCCCACCTCTCTATTGACACCTGGGAGACTCTGACTATCACTACTTTGAATCAAGCACTGATTTTCAGCATTTATTCTGTATCCACCACTTACTAATGCCCTTTCAATGATTTTCTCATTTGGAAGTTGTTACAAAAGGG--AGGGGTTATAACCTTAGGCACGTTGTTTAAGAGAATTGTAAAAATAAGGAAACATGATGGCAATGGGCTTTTCTGCTTTCTCCTAGAACACTTTGTATTCATTTTCTCACCTGTGTTTGGTTGGTTGCAAGGTGGCTTCCACA-CCCCCGAGTTTATTTCAAGTAGCAGAAACACTTGCTTAGAAGACAAGTACTTTGGGAAATGCAGGGTCTCAGGCTCTGTCCTTAGGACTCCACACATCAGAAAGACATGTGCGTTTCCTCCCGCAATCCTGGAGGTGCCCGTGGACTGCAGGTTCGCTCCTCACTGACTTTACTCATGTCCTACTGGAAAAGGATGGAACTTCTAGAAATGTCCCAATGGCTTGGAACACTCAATTTCTCTGTGTGCACCGCAAGCAAACTGACAGTTTGACTTTTCAATTCTATTCAATACTTGAAAAT-AAACTGAATTTTCAGTATATTTCTTTCCAGAGAGTAAACTGAAAAGGGAACCTTTCTAAATTC--AGTTATGATTTCCTGAAACATTGAAGAAGGCAAATGTGGGGGCCTTTAAAGACAAGAGAATTCTCTGACCTCAAATTTCATGTGGCAGCTGCAAGGTGGAGCTGGCAGCATCTGTCCCCACCTCTGGGTACACAGCAGAATGTGCCAGCTTTGGGGACCCTGGAGGACACAGCCACACA-GTGTCTGGGGGCATCCAGCAGACCCTCAGGGAGGACTCGGTCCACACAGGAGCCTCCTTAATCAATTTCTCCCTGAAGAAATCCTGAAGTCTTAGAAATCCACAAAGAAAAAAGATATTCATGTCTCTGAT----AAAA-GAAATGCCAGCAATCCAGCACTGAGAAGGGAAGCTACG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30159335 1196 + 172585720 TttcatccagccaactgatgtatttgctgaggtcttgccatgtgccacactgggtgctaagcattggagtctgaacaggaacagacccctgggatgcactcccatggggcccttcactgtccCTTCCCTGGCTGTGAGACATCCTCATCTCCCTGAGGCTCTTCTTTCTGGTCGCTGGGAAAAGTCCCTGGCCCACCTCTCTATAGACACCTGGGAGACTCTGACTATCACTATTTTGAATCAAGCACTGATTTTCAGCATTTATTCTGTATCCACCACTTACTAATGCCCTTTCAATGATTTTCTCATTTAGAAGTTGTTACAAATGGGAAAAAAGTTATAACCTTAGGCACGTTGTTCAAGAGAATTGTAAAAATAAGGAAACATGATGGCAATGGACTTTTCTGCTTTCTCCCAGAACACTTCATATTCATTTTCTTGTCTGGGTTTGCCTGGTTGCAAGGTGGCTTCCACA-CCCCCAAGTTTATTTCAAGTTGCAGAAACACTTGCTTAGCAAACAAGTACTTTGGGAAATGCAGGGTCTCAGGCTCTGTCCTCAGGACTCCACACATCAGAAAGATGTGTGCATCTCCTCCCGCAATCCTGGAGGTGCCCATGGACTGCAGGTTCGCTCCTCACTGACTTTATTCATGTCCTACTGGAAAAGGATGGAGCTTCTAGAAATGTCCCAGTGGCTTGGAACACTCAATTTCTCTGTGTGCACTGCAAGTAAACTGACAGTTTGACTTTTCAATTCTATTCGATATCTGAAAATAAAACAGAATTTTCAGTATATTTCCTTCCAGAGAGTAAACTGAAAAGGGAACCTTTCTAAATTCAGAGTTATGATTTCCTGAAACATCGAAGAAGGCAAATGTGGGGACC-TTAAAGACAAGAGAATTCTCTGACCTCAAATTTCATGTGGCAGCTATAAGGTGGAGCTGGCAGCATCTGTCCCCACCTCTGGGTACACAGCAGAATGTGCCGGCTTTGGGGATCCTGGAGGACACAGCCACACT-GTATCTGGGGACATCCAGCAAACCCTCAAGAAGGACTCAGTCTACGCAGGAGCCTCCTTAAGCAACTTCTCCCTGAAGAAACCCTGAAGTCTTAGAAATCCATAAAGAAAAATGATATTCATGTCTCTGATAAAGACAA-GAAATGCCAGCAATCCAGTACCGAGAAGGGAAGCTACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29822797 1195 - 170955103 TttcatccagccaactgatgtatttgctgaggtcttgccatgtgccacactgggtgctaagcattggagtctgaacaggaacagacccctgggatgcactcccatggggcccttcactgtccCTTCCCTGGCTGTGAGACATCCTCATCTCCCTGAGGCTCTTCTTTCTGGTCGCTGGGAAAAGTCCCTGGCCCACCTCTCTATAGACACCTGGGAGACTCTGACTATCACTATTTTGAATCAAGCACTGATTTTCAGCATTTATTCTGTATCCACCACTTACTAATGCCCTTTCAATGATTTTCTCATTTAGAAGTTGTTACAAATGGGAAAAAAGTTATAACCTTAGGCACGTTGTTCAAGAGAATTGTAAAAATAAGGAAACATGATGGCAATGGACTTTTCTGCTTTCTCCCAGAACACTTCATATTCATTTTCTTGTCTGGGTTTGCCTGGTTGCAAGGTGGCTTCCACA-CCCCCAAGTTTATTTCAAGTTGCAGAAACACTTGCTTAGCAAACAAGTACTTTGGGAAATGCAGGGTCTCAGGCTCTGTCCTCAGGACTCCACACATCAGAAAGATGTGTGCATCTCCTCCCGCAATCCTGGAGGTGCCCGTGGACTGCAGGTTCGCTCCTCACTGACTTTATTCATGTCCTACTGGAAAAGGATGGAGCTTCTAGAAATGTCCCAGTGGCTTGGAACACTCAATTTCTCTGTGTGCACTGCAAGTAAACTGACAGTTTGACTTTTCAATTCTATTCGATATCTGAAAAT-AAACAGAATTTTCAGTATATTTCCTTCCAGAGAGTAAACTGAAAAGGGAACCTTTCTAAATTCAGAGTTATGATTTCCTGAAACATCGAAGAAGGCAAATGTGGGGACC-TTAAAGACAAGAGAATTCTCTGACCTCAAATTTCATGTGGCAGCTGTAAGGTGGAGCTGGCAGCATCTGTCCCCACCTCTGGGTACACAGCAGAATGTGCCGGCTTTGGGGATCCTGGAGGACACAGCCACACT-GTATCTGGGGACATCCAGCAAACCCTCAAGAAGGACTCAGTCTACGCAGGAGCCTCCTTAAGCAACTTCTCCCTGAAGAAACCCTGAAGTCTTAGAAATCCATAAAGAAAAATGATATTCATGTCTCTGATAAAGACAA-GAAATGCCAGCAATCCAGTACCGAGAAGGGAAGCTACG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2872120 1193 -   2996164 TttcatccagccaactgatgtatttgctgaggtcttgccatgtgccacactgggtgctgagcattggagtctgaacaggaacagacccctgggatgcactcccatggggcccttcactgtccCTTCCCTGGCTGTGAGACATCTTCATCTCCCTGAGGCTCTTCTTTCTGGTCTCTGGGAAAAGTCCCTGGCTCACCTCTCTATAGACACCTGGGAGACTCTGACTATCACTACTTTGAATCAAGCACTGATTTTCAGCATTTATTCTATAACCACCACTTACTAATGCCCTGTCAATGATTTTCTCATTTAGAGGTTGTTACAGACGGG--AGGGGTTATAACCTTAGGCACGTTGTTTAAGAGAATTGTAAAAATAAGGAAACATGATGGCAAAGGACTTTTCTGCTTTCTCCCAGAACACTTCATATTCATTTTCTTGTCTGGGTTTGCTTGGTTGCAAGGTGGTTTCCACA-CCCCTGAGTTTATTTCAAGTCGCGGAAACACTTGCTTAGCAAACAAGTACTTTGGGAAATGCAGGGTCTCAGGCTCTGTCCTCAGGACTCCACACATCAGAAAGATGTGTGCATCTCCTTCCACAATCCTGGAGGTGCCTGTGGACTGCAGGTTCGCTCCTCACTGACTTTACTCATGTCCTGCTGGAAAAGGATGGAGCTTCTAGAAATGTCCCAGTGGCTTGGAACACTCAATTTCTCTGTGTGCACTGCAAGTAAACTGACAGTTTGACTTTTCAATTCTATTCGATATCTGAAAAT-AAACAGAATTTTCAGTATATTTCCTTCCAGAGAGTAAACTGAAAAGGGAACCTTTCTAAATTCAGAGTTATGATTTCCTGAAACATCGAAGAAGGCAAATGTGGGGACC-TTAAAGACAAGAGAATTCTCTGACCTCAAATTTCATGTGGCAGCTGTAAGGTGGAGCTGGAAGCATCTGTCCCCACCTCTGGGTACACAGCAGAATGTGCCGGCTTTGGGGATCCTGGAGGACACAGCCACACT-GTATCTGGGGACATCCAGCAAACCCTCAAGAAGGACTCAGTCTACGCAGGAGCCTCCTTAAGCAACTTCTCCCTGAAGAAACCCTGAAGTCTTAGAAATCCATAAAGAAAAATGATATTCATGTCTCTGATAAAGACAA-GAAATGCCAGCAATCCAGTACCGAGAAGGGAAGCTACG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     620287 1193 +    766320 TttcatccagccaactgatgtatttgctgaggtcttgccatgtgccacactgggtgctgagcattggagtgtgaacaggaacagacccctgggatgcactcccatggggcccttcactgtccCTTCCCTGGCTGTGAGACATCCTCATCTCCCTGAGGCTCTTCTTTCTAGTCGCTGGGAAAAGTCCCTGGCTCACCTCTCTATAGACACCTGGGAGACTCTGACTATCACTACTTTGAATCAAGCACTGATTTTCAGCATTTATTCTGTACCCACCACTTACTAATGCCGTTTCAATGATTTTCTCATTTAGAGGTTGTTACAAACTGG--AGGGGTTATAACCTTAGGCACGTTGTTTAAGAGAATTGTAAAAATAAGGAAACATGATGGCAATGGACTTTTCTGCTTTCTCCCAGAACACTTCATATTCATTTTCTCATCTGGGTTTGCTTGGTTGCAAGGTGTCTTCCACA-CCCCCGAGTTTATTTCAAGTCACAGAAACACTTGCTTAGCAAACAAGTACTTTGGGAAATGCAGGGTCTCAGGCTCTGTCCTCAGGACTCCACACATCAGAAAGACGTGTGCATCTCCTCCCGCAATCCTGGAGGTGCCCGTGGACTGCAGGTTCGCTCCTCACTGACTTTACTCATGTCCCACTGGAAAAGGATGGAGCTTCTAGAAATGTCCCAGTGGCTTGGAACACTCAGTTTCTCTGTGTGCACTGCAAGTAAACTGATAGTTTGACTTTTCAATTCTATTCGATATCTGAAAAT-AAGCAGAATTTTCAGTATATTTCCTTCCAGAGAGTAAACTGAAAAGGGAACCTTTCTAAATTCAGAGTTATGATTTCCTGAAACATTGAAGAAGGCAAATGTGGGGACC-TTAAAGACACGAGAATTCTCTGACCTCAAATTTCATGTGGCAGCTGTAAGGTGGAGCTGGCAGCATCTGTCCCCACCTCTGGGTACACAGCGGAATGTGCCGGCTTTGGGGATCCTGGAGGACACAGTCACACT-GTGTCTGGGGACATCCAGCAAACCCTCAAGAAGGACTCAGTCTACGCAGGAGCCTCCTTAAGCAACTTCTCCCTGAAGAAACTCTGAAGTCTTAGAAATCCATAAAGAAAAAAGATATTCATGTCTCTGATAAAGAAAA-GAAATGCCAGCAATCCAGCACCGAGAAGGGAAGCTACG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29076140 1186 -  71996105 Tttcatccagccaactgatgtatttgctgaggtcttgccatgtgccacactgggtgctgagcattggagtctgaacaggaacagacccctgggatgcactcccatggggcccttcactgtc----ccctggctgtgagacaTCCTCATCTCCCTGAGGCTCTTCTTTCTGGTCGCTTGGAAAAGTCCCTGGCCCGCCTCTCTATAGACACCTGGGAGACTCTGACTATCACTGCTTTGAATCAAGCACTGATTTTCAGCATTTATTCTGTACCCACCACTTACTCATGCCCTGTCAATGATTTTCTTATTTAGAGGTTGTTATAAACTGG--AGGGGTTATAACGTTAGGCATGTTGTTTAAGAGAATTGTAAAAATAAGGAAACATGATGGCAATGGACTTTTCTGCTTTCTCCCAGAACACTTCATATTCATTTTCTCGTCTGGGTTTGCTTGGTTGCAAGGTGGCTTCCACA-CCCCCGAGTTTATTTCAAGTCACAGAAACACTTGCTTAGCAAACAAGTACTTTGGGAAATGCAGGGTCTCAGGCTCTGTCCTCAGCACTCCACACATCAGAAA---GTGCGCATCTCCTCCCGCAATCCTGGAGGTGCCCGTGGACTGCAGGTTCGCTCCTCACTGACTTTACTCATGTCCTGCTGGAAAAGGATGGAGCTTCTAGAAATGTCCCAGTGGCTTGGAACACTCAGTTTCTCTGTGTGCACTGCAAGTAAACTGACAGTTTGACTTTTTAATTCTATTCAATATCTGAAAAT-AAACAGAATTTTCAGTGTATTTCCTTCCAGAGAGTAAACTGAAAAGGGAACCTTTCTAAATTCAGAGTTATGATTTCCTGAAACATTGAAGAAGGCAAATGTGGGGACC-TTAAAGACAAGAGAATTCTCTGACCTCAAATTTCATGTGGCAGCTGTAAGGTGGAGCTGGCAGCATCTGTCCCCACCTCTGGGTACACAGCAGAATGTGCCGGCTTCTGGGATCCTGGAGGACACAGTCACACT-GTGTCTGGAGACATCCAGCAAACCCTCAAGAAGGACTCAGTCCACGCAGGAGCCTCCTTAAGCAACTTCTCCCTGAAGAAACCCTGAAGTCTTAGAAATCCATAAAGAAAAATGATATTCATGTCTCTGATAAAGACAA-GAAATGCCAGCAATCCAGTACCGAGAAGGGTAGCTACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      12575 1193 +    119286 TttcatccagccaactgatgtatttgctgaggtcttgccatgtgccacactgggtgctgagcattggagtgtgaacaggaacagacccctgggatgcactcccatggggcccttcactgtccCTTCCCTGGCTGTGAGACATCCTCATCTCCCTGAGGCTCTTCTTTCTAGTCGCTGGGAAAAGTCCCTGGCCCACCTCTCTATAGACACCTGGGAGACTCTGACTATCACTACTTTGAATCAAGCACTGATTTTCAGCATTTATTCTGTACCCACCACTTACTAATGCCGTTTCAATGATTTTCTCATTTAGAGGTTGTTACAAACTGG--AGGGGTTATAACCTTAGGCACGTTGTTTAAGAGAATTGTAAAAATAAGGAAACATGATGGCAATGGACTTTTCTGCTTTCTCCCAGAACACTTCATATTCATTTTCTCATCTGGGTTTGCTTGGTTGCAAGGTGGCTGCCACA-CCCCCAAGTTTATTTCAAGTCACAGAAACACTTGCTTAGCAAACAAGTACTTTGGGAAATGCAGGGTCTCAGGCTCTGTCCTCAGGACTCCACACATCAGAAAGACGTGTGCATCTCCTCCCGCAATCCTGGAGGTGCCCATGGACTACAGGTTCGCTCCTCACTGACTTTACTCATGTCCCACTGGAAAAGGATGGAGCTTCTAGAAATGTCCCAGTGGCTTGGAACACTCAGTTTCTCTGTGTGCACTGCAAGTAAACTGACAGTTTGACTTTTCAATTCTATTCCATATCTGAAAAC-AAGCAGAATTTTCAGTATATTTCCTTCCAGAGAGTAAACTGAAAAGGGAACCTTTCTAAATTCAAAGTTATGATTTCCTGAAACATTGAAGAAGGCAAATGTGGGGACC-TTAAAGACACGAGAATTCTCTGACCTCAAATTTCATGTGGCAGCTGTAAGGTGGAGCTGGCAGCATCTGTCCCCACCTCTGGGTACACAGCAGAATGTGCCGGCTTTGGGGATCCTGGAAGACACAGTCACACT-GTGTCTGGGGACATCCAGCAAACCCTCAAGAAGGACTCAGTCTACGCAGGAGCCTCCTTAAGCAACTTCTCCCTGAAGAAACTCTGAAGTCTTAGAAATCCATAAAGAAAAAAGATATTCATGTCTCTGATAAAGAAAA-GAAATGCCAGCAATCCAGCACCAAGAAGGGAAGCTACG
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2728788 1192 -   3067355 TttcatccagccaactgacgtatttgctgaggtcttgccatgtgccacagtgggtgctgagcattggagtctgaacaggaacagacccctgggatgcactcccatggggcccttcactgtcccgtCCCTGGCTGTGAGACATCCTCATCTCCCTGAGGCTCTTCTTTCTGGTCGCTGGGAAAAGTCCCTGGCCCACCTCTCTATAGACACCTGGGAGACTCTGACTATCACTACTTTGAATCAAGCACTGATTTTCAGCATTTATTCTGTATCTACCACTTACTAATGCCCTGTCAATGATTTTCTCATTTAGAGGCTGTTACAAACTGG--AGGGGTTATAACCTTAGGCACGTTGTTTAAGAGAATTGTAAAAATAAGGAAACATGATGGCAATGGACTTTTCTGCTTTCTCCCAGAACACTTCGTGTTCATTATCTCATCTGGGTTTGCTTGGTTGCAAGGTGGCTTCCACA-CCCCCGAGTTTATTTCAAGTCACAGAAACACTTGCTTAGCAAACAAGTACTTTGGGAAATGCAGGGTCTCAGGCTCTGTCCTCAGGACTCCACACATCAGAAAGACTTGTGCATCTCCTCCCGCAATCCTGGAGGTGCCCGTGGACTGCA-GTTCGCTCCTCACTGACTTTACTCATGTCCTACTGGAAAAGGATAGAGCTTCTAGAAATGTCCCAGTGGCTTGCAATACTCAATTTCTCTGTGTGCACTGCAAGTAAACTGACAGTTTGACTTTTCAATTCTATTCGATATCTGAAAAT-AAACAGAATTTTCAGTATATTTCCTTCCAGAGAGTAAACTGAAAAGGGAACCTTTCTAAATTCAGAGTTATGATTTCCTGAAACATCGAAGAAGGCAAATGTGGGGACC-TTAAAGACAAGAGAATTCTCTGACCTCAAATTTCATGTGGCAGCTGTAAGATGGAGCTGGCAGCATCTGTCCCCACCTCTGGGTACACAGCAGAATGTGCCGGCTTTGGGGATCCTGGAGGACACGGCCACACT-GTATCTGGGGACATCCAGCAAACCCTCAAGAAGGACTCAGTCTACGCAGGAGCCTCCTTAAGCAACTTCTCCCTGAAGAAACCCTGAAGTCTTAGAAATCCATAAAGAAAAATGATATTCATGTCTCTGATAAAGAAAA-GAAATGCCAGGAATCCAGCACTGAGAAGGGAAGCTATG
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     312508 1194 -   1771730 TTTCATCCAGCCAGCTGATGTATTTGTGGAGGTTTTGCCATGTGCTgcactgggcactgagcactggagtctgaacaggagcaGACCCCTGTGATGCATTCACA-GGGGCCCTTCACTGTCCTGTCCCTGGCTGCGAGACATCCTCATCTCCCGGAGGCTCTTCTTTCTGGTCACTGGGAAAAGTCCCTGGCCAACCTCTCTATTGACACCTGGGAGACTCTGACTATCACTACTTTGAATCAAGCACTGATTTTCAGCATTTATTCTGTATCCACCACTTACCAATGCCCTTTCAATGATTTTCTCATTTAGAAGTTGTTAAAAACAGG--TGTGGTTATAACCTCAGGCACGTTGTTTAAGAGAATTATAAAAATAAGGAAATATGATGGTAATGGCCTTTTCTGCTTTCTCCCAGAACACCTAATATTCATTTTCTCATCTGTGTTTGGTTGGTTGCCCGGTGGATTCCATGTCTCCCGAGTTTATTTCAAGTAACAGAAACACTCGCTTAGTAAACAAGCCATTTGGGAAATGCAGGGTCTCAGGCTCTGTCCTCAGGACTCCACACTTAAGAAACACGTGTG-ATCTCCTCCTTCAATCCTGGAGGTGCCCATGGACTGCATGTTGGTTCCTCACTGACTTTACTCTTGTCCTACTAGAAAAGGATGGAGCTTCTGGAAATGTCCCAGTGGCTTGGAGCACCCAGTTTCTCTGTGTGCACTGCAAGCAAACGGACAGTTTGACTTTTCAATTCTATTCAATATCTGAAAAT-AAACTGAGCTTTCAGTATATTTCCTTCCAGAGAGTAAATTGAAAAGCGAACCTTGCTAAATCCAGAGTTATGATTTCCTGAAACAATGAAGGAGGCAAATGTGTGACCC-TTAAAGACAAGAGAATTCTCTGACGTCAAATTTCATGTGGCAGCTGTAAGATGGAGCTGGCAGCCTCTGTCTCCACCTCTGGGTACACAGCAGAATGCGCCAGCTTTTGGGATCCTGGAGGAGGCAGCCACACACATGTCTGCAGGCATCCAGCAAATCCTCAGGAAGGACTCGATCCACCCAGGAGCCTCCTTAAGCAACTTCTCCCTGAAAAAACCCTGAAGTCTTAGAAATCTTTGAAGAACAAAGATATTCATGTTTCTGATAAAGAAAACGAAATGCCAGCACCCCAGCACGCAGTAGGGAAGTTATG
i cebCap1.NW_016107755v1   C 0 I 410
s aotNan1.NW_018509740v1     384533 1193 -    457564 CTTCATCCAGCCAACTGATGTATTTGTGGAGGTTTTGCCACATGCTGCACTGGGTGCTGAGCACTGGAGTCTGAACAGGAGCAGACCCCCGTGATGCATTCACA-CGGGCCCTTCATTGTCCTGTCCCTGGCTTCGAGACATCCTCATCTCCCTGAGGCTCTTCTTTCTGGTCACTGGGAAAAGTCTCTGGCCCATCTCTCTATCAACACCTGGGAGACTCTGACTATCACTACTTTGAATCAAGCACTGATTTTCAGCATTTATTCTGTATCCACCACTTACTAATGCCCTTTAAATGATTTTCTCATTTAGAAGTTATTAAAAACAGA--TGTGGTTATAACCTCAGGAACATTGTTTAAGAGAATTGTAAAAATAAAGAAATATGATGGTAATGGCCTTTTCTGCTTTCTCCCAGAACACCTCATATTCATTTTCTCATCCGTGTTTGGTTGGTTG-CAGGTGGATTCTACGTCCCCTGAGTTTATTTCAAGTGGCAGAAACACTCGCTTAGTAAACATGTCCTTTGGGAAATGCAGGGTCTCAGGCTCTGTCCTCAGGACTCCACACTTAAGAAACACGTGTG-ATCTCCTCCCTCAATCCTGGAGGCGCCCATGGACTGCATGTTGGCTCCTCACTGACTTTACTCATGTCCTACTGGGAAAGGATGGAGCTTCTGGAAATTTCCCAGTGGCTTGGAGCACCCCATTTCTCTGTGTGCGCTGCAAGCAAATGGACAGTTTGACTTTTCAATTCTATTCAATATCTGAAAAT-AAACTGAGCTTTTGGTATATTTCCTTCCAGAGAGCAAATCGAAAAGTGAACCTTTCTAAATCCAGAGTTATGATTTCCTGAAACAACGAAGAAGGCAAATGTGTGGCCC-TTAAAGACAAGAGAATTCTCTGACGTCAAATTTCATGTGGCGGTTGTAAGACGGAGCTGGCAGCGTCTGTCTCCACCTCTGGGTACACAGCAGAATGCGCCAGCTTTTAGGATCCTAGAGGAGGCAGCCACACACATGTCTGCAGGCATCCAGCAAACCCTCAGGAAGGACTCAGTTCACCCAGCAGCCTCCTTAAGCAACTTCTCCCTGAAGAAACCCTGAAGTCTTAGAAATCTATGAAAAACAAAGATATTCCTGTCTCTGATAAAGGAAACAAAATGCCAGCACCCCAGCACCTAGTAGGGAAGTTACG
i aotNan1.NW_018509740v1   C 0 I 313
e calJac3.chr4             30104189 1649 + 171630274 I

a score=5324186.000000
s hg38.chr6_GL000254v2_alt   970544 699 +   4827813 AGACCACATTTTCTGCATGTGGAGAAGACACGTCTAATGGAGAGGTGGGAACTTGTCTCAAAAGTGTTGGGCCGCAGTGAGAGGGTGTGGTCGTCACTGCCACCACCCGCTGCTCACTCAGTGACCCCTCCCCATTGTAACTAACGGGCCAGTGAAGAGAAACACTTTTCGTCTGCTTGTACTGAAATAAGGCTATTACAATAAATCATCTCTGTGGTTGATTTTTCATTTAAGGATGGGATAACTGGGGAAATTGGTGCCTGCAGTGCAGGTTTTAAAGAAGTTCCTAGAAGCCCTTCTGAGGCCATCTCCAGGAGGCTGCCCCAGCGGGTATGAGGCCTTGCGCTTCTGCCATCCTGTGTGTCCCTGTGATGGAATTTTGGCCCAGCTAGGGATGGCAAGAGGCCAGGTCATCGCAGGTGGTCTGCAGGCCTGGTGAGGAAGGACAATGACAGACGGGGAGGCAGAAAGGCACACATATGACCAGACCTCCCCCTGGGTCCTGCTCCCATTCCTCTGTCCATCACTCTTGCTCTGTCTGCCCTAGGGGAAATTTCCTGAAGGAAACAGGAAAAGGAACCTCTATTCCTGGCTGCATATCTTTTATGTAGGCCTTTCCTGTTATTCAAGCATATCCCCAGCAGATGGCAGAGAAGACATTTCAATTTCGTGCCTCTGCTTTTCCTCCCCCTCCTCCAA
s panTro5.chr6             29933284 699 + 175400573 AGACCACATTTTCTGCATGTAGAGAAGACACGTCTAATGGAGAGGTGGGAACTTGTGTCAAAAGTGTTGGGCCGCTGTGAGAGGGTGTGGTCGTCACTGCCATCACCCACTGCTCACTCAGTGACCCCTCCCCATTGTAACTAATGGGCCAGTGAAGAGAAACACTTTTCGTCTGCTTGTACTGAAATAAGGCTATTACAATAAATCATCTCTGTGGTTGATTTTTCACTTAAGGATGGGATAACTGGGGAAATTGGTGCCTGCAGTGCAGGTTTTAAAGAAGTTCCCAGAAGCCCTCCTGAGGCCATCTCCAGGAGGCTGCCCCAGCGGGTATGAGGCCTTGCGCTTCTGCCATCCTGTGTGTCCCTGTGATGGAATTTTGGCCCAGCTAGGGATGGCAAGAGGCCAGGTCATCGCAGGTGGTCTGCAGGCCTGGTGAGGAAGGACAATGACAGACGGGGAGGCAGAAAGGCACACATATGACCAGACCTCCCCCTGGGTCCTGCTCCCATTCCTCTGTCCATCGCTCTTGCTCTGTCTGCCCTAGGGGAAATTTCCTGAAGGAAACAGGAAAAGGAACCTCTATTCCTGGCTGCATATCTTTTATGTAGGCCTTTCCTGTTATTCAAGCATATCCCCAGCAGATGGCAGAGAAGACATTTCAATTTCGTGCCTCTGCTTTTCCTCCCCCTGCTCCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30166891 699 + 173848474 AGACCACATTTTCTGCATGTAGAGAAGACACGTCTAATGGAGAGGTGGGAACTTGTGTCAAAAGTGTTGGGCCGCTGTGAGAGGGTGTGGTCGTCACTGCCACCACCCACTGCTCACTCAGTGACCCCTCCCCATTGTAACTAATGGGCCAGTGAAGAGAAACACTTTTCGTCTGCTTGTACTGAAATAAGGCTATTACAATAAATCATCTCTGTGGTTGATTTTTCACTTAAGGATGGGATAACTGGGGAAATTGGTGCCTGCAGTGCAGGTTTTAAAGAAGTTCCCAGAAGCCCTCCTGAGGCCATCTCCAGGAGGCTGCCCCAGCGGGTATGAGGCCTTGCGCTTCTGCCATCCTGTGTGTCCCTGTGATGGAATTTTGGCCCAGCTAGGGATGGCAAGAGGCCAGGTCATCGCAGGTGGTCTGCAGGCCTGGTGAGGAAGGACAATGACAGACGGGGAGGCAGAAAGGCACACATATGACCAGACCTCCCCCTGGGTCCTGCTCCCATTCCTCTGTCCATCGCTCTTGCTCTGTCTGCCCTAGGGGAAATTTCCTGAAGGAAACAGGAAAAGGAACCTCTATTCCTGGCTGCATATCTTTTATGTAGGCCTTTCCTGTTATTCAAGCATATCCCCAGCAGATGGCAGAGAAGACATTTCAATTTCGTGCCTCTGCTTTTCCTCCCCCTCCTCCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5966924 698 +   6154872 AGACCACATTTTCTGCATGTGGAGAAGACACATCTAATGGAGAGGTGGGAACTTGTCTCAAAAGTATTGGG-CGCAGTGAGAGGGTGTGGTCGTCACTGCCACCACCCACTGCTCACTCAGTGACCCCTCCCCATTGTAACTAATGGGCCAGTGAAGAGAAACACTTTTTGTCTGCTTGTACTGAAATAAGGCTATTACAATAAATCATCTCTGTGGTTGATTTTTCACTTAAGGATGGGATAACTGGGGAAATTGGTGCCTGCAGTGCAGGTTTTAAAGAAGTTCCCAGAAGCCCTTCTGAGGCCATCTCCAGGAGGCTGCCCCAGCGGGTATGAGGCCTTGCGCTTCTGCCATCCTGTGTGTCCCTGTGATGGAATTTTGGCCCAGCTAGGGATGGCAAGAGGCCAGGTCATCGCCGGTGGTCTGCAGGCCTGGTGAGGAAGGACAATGACAGACGGGGAGGCAGAAACACACACATATGACCAGACCTCCCCCTGGGTCCTGCTCCCATTCCTCTGTCCATCGCTCTTGCTCTGTCTGCCCCCGGGGAAATTTCCTGAAGGAAACAGGAAAAGGAACCTCTATTCCTGGCTGCATATCTTTTATGTAGGCCTTTCCTGTTATTCAAGCATATCCCCAGCAGATGGCAGAGAAGACATTTCAATTTCGTGCCTCTGCTTTTCCTCCCCCTCCTCCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74672698 699 + 122973662 AGACCACATTTTCTGCATGTGGAGAAGACACATCTAATGGAGAAGTGGGAACTTGTCTCAAAAGTGTTGGGCCACAGTGAGAGGGTGTGGTCGTCACTGCCACCACCCGCTGATCACTCAGTGACCCCTCCCTATTGTAACTAATGGGCCAATGAAGAGAAACACTTTTCATCTGCCTGTACTGAAATAAGGCTATTAAAATAAATCATCTCTGTGGTTGATTTTTCACTTAAGGATGGGATAACTGGGGTAATTGGTGCCTGCAGTGCAAGTTTTAAAGAAATTCCCAGAAGCCCTTCTGAGGCCATCTGCAGGAGGCTGCCCCAGCAGGAATGAGGCCTTGTGCTTCTGCCATCCTGTGTGTCCTTGTGATGGAATTTTGGCTCAGCTAAGGATGGCAAGAGGCCAGGTCATCGCAGGTGGTCTGCAGGCCTGGTGAGGAAGGACAATGACAGACAGGGAGGCAGAAACGCACACATATGACCAGATCTCCCCCTGGGTCCTGCTCCTGTTCCTCTGTCCATCGCTGTTGCTCTGTCTGCCCCAGGGGAAATTTCCTGAAGGAAACAGGAAAAGGAACCTCTATTCCTGGCTGCATATATTTTATGTAGGCCTTTCCTGTTATTCAGGCAAATCCCCAGCAGATGGCAGAACAGACATTTCAATTTCATGCCTCTGCTTTTCCTCCCCCTCCTCCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30160531 698 + 172585720 AGACCACATTTTCTGCATGTGGAGGAGACACATCTAACGGAGAAGTGGGAACTTGTCTCAAAAGTGGTGGTCCGCAGTGAGAGGATGTGGTCGTCACTGCCACCACCCGCTGCTTACTCAGTGACCCCTCCCCATTGTAACTAATGGGCCAATGAAGAGAAACCCTTTTCACCTGCCTCTACTGAAATAAGGCTATTACAATCAGTCATCTCTGTGGTTGATTTTTCACTTAAGGATGGGATAACTGGGGTAATTGGTGCCTGTAGTGCAGGTTTTAAAGAAGTTCCCAGAAGCTCTTCTGAAGCCATCTCCAGGAGGCTGCCCCAGCGGGAATGAGGCCTTGCGCTTCTGCCACCCTGTGTGTCCCCGTGATGGAATTTTGGCCCAGCTAGGGATGGCAAGAGACCAGGCCATCGCAGGTGGTCTGCAGGCCTGGTGAGGAAGGACAATGACAGACGGGGAGGCGGAAACGCACACACACAACCAGACTTCCCCCTGGGTCCTGCTCCCATTCCTCTGTCCATCGCTCTTGCTCTGTCTGCCCCAGGGGAAATTTCCTGAAGGAAAGAGGAAAAGGAACCTCTATTCCTGGCTGCATATCTTTTATGTAGGCCTTTCCTGTTACTCAAGC-AATCCCCAGCAGATGGCAGAGAAGACATTTCAATTTCATGCCTCTGCGTTTCCTCCCCCTCCTCCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29823992 698 - 170955103 AGACCACATTTTCTGCATGTGGAGGAGACACATCTAACGGAGAAGTGGGAACTTGTCTCAAAAGTGTTGGTCCGCAGTGAGAGGATGTGGTCGTCACTGCCACCACCCGCTGCTCACTCAGTGACCCCTCCCCATTGTAACTAATGGGCCAATGAAGAGAAACCCTTTTCACCTGCCTGTACTGAAATAAGACTATTACAATCAGTCATCTCTGTGGTTGATTTTTCACTTAAGGATGGGATAACTGGGGTAATTGGTGCCTGTAGTGCAGGTTTTAAAGAAGTTCCCAGAAGCTCTTCTGAAGCCATCTCCAGGAGGCTGCCCCAGCGGGAATGAGGCCTTGCGCTTCTGCCACCCTGTGTGTCCCCGTGATGGAATTTTGGCCCAGCTAGGGATGGCAAGAGACCAGGCCATCGCAGGTGGTCTGCAGGCCTGGTGAGGAAGGACAATGACAGACGGGGAGGCGGAAACGCACACACACAACCAGACCTCCCCCTGGGTCCTGCTCCCATTCCTCTGTCCATCGCTCTTGCTCTGTCTGCCCCAGGGGAAATTTCCTGAAGGAAAGAGGAAAAGGAACCTCTATTCCTGGCTGCATATCTTTTATGTAGGCCTTTCCTGTTACTCAAGC-AATCCCCAGCAGATGGCAGAGAAGACATTTCAATTTCATGCCTCTGCGTTTCCTCCCCCTCCTCCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2873313 698 -   2996164 AGACCACATTTTCTGCATGTGGAGGAGACACATCTAACGGAGAAGTGGGAACTTGTCTCAAAAGTGTTGGTCCGCAGTGAGAGGATGTGGTCGTCACTGCCACCACCTGCTGCTCACTCAGTGACCCCTCCCCATTGTAACTAATGGGCCAATGAAGAGAAACCCTTTTCACCTGCCTGTACTGAAATAAGACTATTACAATCAGTCATCTCTGTGGTTGATTTTTCACTTAAGGATGGGATAACTGGGGTAATTGGTGCCTGTAGTGCAGGTTTTAAAGAAGTTCCCAGAAGCTCTTCTGAAGCCATCTCCAGGAGGCTGCCCCAGCGGGAATGAGGCCTTGCGCTTCTGCCACCCTGTGTGTCCCCGTGATGGAATTTTGGCCCAGCTAGGGATGGCAAGAGACCAGGCCATCGCAGGTGGTCTGCAGGCCTGGTGAGGAAGGACAATGACAGACGGGGAGGCGGAAACGCACACACACAACCAGACTTCCCCCTGGGTCCTGCTCCCATTCCTCTGTCCATCACTCTTGCTCTGTCTGCCCCAGGGGAAATTTCCTGAAGGAAAGAGGAAAAGGAACCTCTATTCCTGGCTGCATATCTTTTATGTAGGCCTTTCCTGTTACTCAAGC-AATCCCCAGCAGATGGCAGAGAAGACATTTCAATTTCATGCCTCTGCGTTTCCTCCCCCTCCTCCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     621480 698 +    766320 AGACCACATTTTCTGCATGTGGAGGAGACACATCTAACGGAGAAGTGGGAACTTGTCTCAAAAGTGTTGGGCCGCAGTGAGAGGATGTGGTCGTCACTGCCACCACCCGCTGCTCACTCAGTGACCCCTCCCCATTGTAACTAATGGGCCAATGAAGAGAAACCCTTTTCACCTGCCTGTACTGAAATAAGACTATTACAATCAGTCATCTCTGTGGTTGATTTTTCACTTAAGGATGGGATAACTGGGGTAATTGGTGCCTGTAGTGCAGGTTTTAAAGAAGTTCCCAGAAGCTCTTCTGAAGCCATCTCCGGGAGGCTGCCCCAGCGGGAATGAGGCCTTGCGCTTCTGCCACCCTGTGTGTCCCCGTGATGGAATTTTGGCCCAGCTAGGGATGGCAAGAGACCAGGCCATCGCAGGTGGTCTGCAGGCCTGGTGAGGAAGGACAATGACAGACGGGGAGGCGGAAACGCACACACACAACCAGACTTCCCCCTGGGTCCTGCTCCCATTCCTCTGTCCATCGCTCTTGCTCTGTCTGCCCCAGGGGAAATTTCCTGAAGGAAACAGGAAAAGGAACCTCTATTCCTGGCTGCATATCTTTTATGTAGGCCTTTCCTGTTATTCAAGT-AATCCCCAGCAGATGGCAGAGAAGACATTTCAATTTCATGCCTCTGCGTTTCCTCCCCCTCCTCCAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29077326 699 -  71996105 AGACCACATTTTCTGCATGTGGAGGAGACACATCTAACGGAGAAGTGGGTACTTGTCTCAAAAGTGTTGGGCCGCAGTGAGAGGATGTGGTCGTCACTGCCACCACCCGCTGCTCACTCAGTGACCCCTCCCCATTGTAACTAATGGGCCAATGAAGAGAAACCCTTTTCACCTGCCTGTACTGAAATAAGACTATTACAATCAGTCATCTCTGTGGTTGATTTTTCACTTAAGGATGGGATAACTGGGGTAATTGGTGCCTGTAGTGGAGGTTTTAAAGAAGTTCCCAGAAGCTCTTCTGAGGCCATCTCTGGGAGGCTGCCCCAGCGGGAATGAGGCCTTGTGTTTCTGCCACCCTGTGTGTCCCCGTGATGGAATTTTGGCCCAGCTAGGGATGGCAAGAGGCCAGGCCATCGCAGGTGGTCTGCAGGCCTGGTGAGGAAGGACAATGACAGACGGGGAGGCGGAAATGCACACACACAACCAGACCTCTCCCTGGGTCCTGCTCCCATTCCTCTGTCCATCGCTCTTGCTCTGTCTGCCCCAGGGGAAATTTCCTGGAGGAAACAGGAAAAGGAACTTCTATTCCTGGCTGCATATTTTTTATGTAGGTCTTTCCTGTTATTCAAGCAAATCCCCAGCAGATGGCAGAGAAGACATTTCAATTTCATGCCTCTGCTTTTCCTCCCCCTCCTCCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      13768 698 +    119286 AGACCACATTTTCTGCATGTGGAGGAGACACATCTAACGGAGAAGTGGGAACTTGTCTCAAAAGTGTTGGGCCGCAGTGAGAGGATGTGGTCGTCACTGCCACCACCCGCTGCTCACTCAGTGACCCCTCCCCGTTGTAACTAATGGGCCAATGAAGAGAAACCCTTTTCACCTGCCTGTACTGAAATAAGACTATTACAATCAGTCATCTCTGTGGTTGATTTTTCACTTAAGGATGGGATAACTGGGGTAATTGGTGCCTGTAGTGCAGGTTTTAAAGAAGTTCCCAGAAGCTCTTCTGAAGCCATCTCCAGGAGGCTGCCCCAGCGGGAATGAGGCCTTGCGCTTCTGCCACCCTGTGTGTCCCCGTGATGGAATTTTGGCCCAGCTAGGGATGGCAAGAGACCAGGCCATCGCAGGTGGTCTGCAGGCCTGGTGAGGAAGGACAATGACAGACGGGGAGGCGGAAACGCACACACACAACCAGACTTCCCCCTGGGTCCTGCTCCCATTCCTCTGTCCATCGCTCTTGCTCTGTCTGCCCCAGGGGAAATTTCCTGAAGGAAACAGGAAAAGGAACCTCTATTCCTGGCTGCATATCTTTTATGTAGGCCTTTCCTGTTATTCAAGC-AATCCCCAGCAGATGGCAGAGAAGACATTTCAATTTCATGCCTCTGCGTTTCCTCCCCCTCCTCCAA
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2729980 699 -   3067355 CGACCACATTTTCTGCATGTGGAGGAGACACCTCTAACGGAGAAGTGGGAACTTGTCTCAAAAGTGTTGGTCTGCAGTGAGAGGATGTGATCGTCACTGCCACCACCCGCTGCTCACTCAGTGACCCCTCCCCATTGTAACTAATGGGCCAATGAAGAGAAACCCTTTTCACCTGCCTGTACTGAAATAAGACTATTACAATCAATCATCTCTGTGGTTGATTTTTCACTTAAGGATGGGATAACTGGGGTAATTGGTGCCTGTAGTGCATGTTTTAAAGAAGTTCCCAGAAGCTCTTCTGAGGCCATCTCTGGGAGGCTACCCCAGCGGGAATGAGGCCTTGTACTTCTGCCACCCTGTGTGTCCCCGTGATGGAATTTTGGCCCAGCTAGGGATAGCAAGCGGCCAGGCCATCGCAGGTGGTCTGCAGGCCTGGTGAGGAAGGACAATGACAGACGGGGAGGCGGAAATGCACACACACAACCAGACCTCCCCCTGGGTCCTGCTCCCATTCCTCTGTCCATCGCTCTTGCTCTGTCTGCCCCAGGGGAAATTTCCTGAAAGAAACAGGAAAAGGAACCTCTCTTCCTGGCTGCATATGTTTTATGTAGGCCTCTCCTGTAATTCAAGCAAATCCCCAGCAGATGGCAGAGAAGACATTTCAATTTCATGCCTCTGCTTCTCCTCCCCCTCCTCCAA
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     314112 678 -   1771730 AGACCACATTTTCTGCATGTGGAGAAGACACATCTAATGGAGAAGTGGGAACTTGTCTCAAAAGTGTTGGGCTGCAGTGAGAGCATGTTGTCATCACT-CCACCACCCGCTGCTCACTCAGTGATCCCTCCTGATTTTAACTAATGGACCAATGAACAGAAACACTTTTCACTTTCCTCTACTGAAATAAGGCTATTACAATAAATCATCTCTGTGGTTGATGTTTCACTTACGGGTGTAATAACTGG-------GGTGCCTATAGTGCAGGTTTTAAAGAAATTCCCAGAAACCCTTCTGAGA-CGTCTCCAGGAGGCTGCCCCAGCAGGAATGAGGCCTTGCACTTCTGCCATTCTGTGTGTCCCTGTGATGGAGTTTTG-----TGTAGGGATGGCAAGAGGCCAGGTCATCACAGATGATCTGCAGGCATGGTGAGGAAGGACAATGACAGACGGGGAGGGAAAAACGCATACACACAACCAGACCTCCCCCGGGGTCCTACTGCCACTCCTTTGCCTGTCACTCTTGC----TCTGCTCC-TGGGAAATTTCCTGAAAGAAACAGGATAAGGAA--TGTATTGCTGGCTGCCTATCTTTTACGTAGGCCTTTCCTGTTATTCAAGCAAATGCCCACCAGATGGCAGAGAAGACATTTCAATTTCGTGCCTCTGCTTTTCGGTCCCCTCCTCCAA
i cebCap1.NW_016107755v1   I 410 I 472
s aotNan1.NW_018509740v1     386039 685 -    457564 AGACCACATTTTCTGCATGTGGAGAAGACAAGTCTAATGGAGAAGTGGGAACTTGTCTCAAAAGTGTTGGGCTGC----AGAGGATGTGGTCATCACTGCCACCACCCACTGCTCGCTCAGCAATCCCTCCTAATTTTAACTAATGGACCAATGAACAGAAACACTTTTCACCTTCCTCTACTGAAATAAGGCTATTACAATAAATCATCTCTGTGGTTGGTTTTTCGCTTAAGGGTAGAATAACTGG-------GGTAATTGGTGCCTGTTTTTTAAAGAAATTCCCAGAAACCCTTCTGAGACCGTCTCCAGGAGGCTGCCCCAGCAGGAATGAGGCCTTGCTCTTCTGCCATTCTGTGTGTCCCTGTGATGGAGTTTTGGCTCAGCTAGGGATGGCAAGAGGCCAGGTCATCACAGGGGATCTGCAGGCCTGGTGAGGAAGGACAATGACAGATGGGGAGGGAAAAATGCATACACACAACCAGACCTCCCCCCGGGTCCTACTCCCATTCCTTTGCCCATCACTCTTGCTCTGTCTGCCCC-TGGGAAATTTCCTGAAAGAAACAGGATAAGGAA--TGTATTCCTGGCTGCCTATCTTTTATGTAGGCCTTTCCTGTTATTCAAGCAAATGCCCACCAGATGGCAGAGAAGACATTTCAATTTCCTGTCTCTGCTTTTCCGTCCCCTCCTCCAA
i aotNan1.NW_018509740v1   I 313 C 0
e calJac3.chr4             30104189 1649 + 171630274 I

a score=51905.000000
s hg38.chr6_GL000254v2_alt   971243 9 +   4827813 CCGGAAAGT
s panTro5.chr6             29933983 9 + 175400573 CCAGAAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30167590 9 + 173848474 CCAGAAAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5967622 9 +   6154872 CCGGAAAGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74673397 9 + 122973662 CCGAGAAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30161229 9 + 172585720 CTGGGAAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29824690 9 - 170955103 CTGGGAAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2874011 9 -   2996164 CTGGGAAGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     622178 9 +    766320 CTGGGAAGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29078025 9 -  71996105 CTGGGAAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      14466 9 +    119286 CTGGGAAGT
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2730679 9 -   3067355 CTGGGAAGT
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     386724 9 -    457564 CTGGGAagt
i aotNan1.NW_018509740v1   C 0 I 458
e cebCap1.NW_016107755v1     314790 472 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=1953126.000000
s hg38.chr6_GL000254v2_alt   971252 342 +   4827813 CAGGACCAAGGGAATGGATGAAGGCATTAAAGGTATAAATGAGAATGGGTGATAATTTCCCTTTCTCTGAGCTGGGGAGTCCCATTGCAAGGGTGGGAATAGAAATGTCCAGTGTAACCATTCAGAGATGACAGATACTGCCCTGAAAACAGCCACAAAATCAAACCATGATGTGCCTCCCTGGGCTCC-TTGGCTCTGGGCTGCTGCTTTCTTTTATTGAGAATCTAAGAGGTGCTGAGCATTCAGTTAAAACGGGACTCAAGAGTTCCTGCATTGTCCTCTGCCTTAATTGCATTTGAAAATATATTTTGTCAGTTCAATCCTTCTCCTGCCCGTCTCTGT
s panTro5.chr6             29933992 342 + 175400573 CAGGACCAAGGGAATGGATGAAGGCATTAAAGGTATAAATGAGAATGGGTGATAATTTCCCTTTCTCTGAGCTGGGGAGTCCCATTGCAAGGGTGGGAATAGAAATGTCCAGTGTAACCATTCAGAGATGACAGATACTGCCCTGAAAACAGCCACAAAATCAAACCATGATGTGCCTCCCTGGGCTCC-TTGGCTCTGGGCTGCTGCTTTCTTTTATTGAGAATCTAAGAGGTGCTGAGCATTCAGTTAAAACGGGACTCAAGGGTTCCTGCATTGTCCTCTGCCTTAATTGCATTTGAAAATATATTTTGTCAGTTCAATCCTTCTCCTGCCCGTCTCTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30167599 342 + 173848474 CAGGACCAAGGGAATGGATGAAGGCATTAAAGGTATAAATGAGAATGGGTGATAATTTCCCTTTCTCTGAGCTGGGGAGTCCCATTGCAAGGGTGGGAATAGAAATGTCCAGTGTAACCATTCAGAGATGACAGATACTGCCCTGAAAACAGCCACAAAATCAAACCATGATGTGCCTCCCTGGGCTCC-TTGGCTCTGGGCTGCTGCTTTCTTTTATTGAGAATTTAAGAGGTGCTGAGCATTCAGTTAAAACGGGACTCAAGGGTTCCTGCATTGTCCTCTGCCTTAATTGCATTTGAAAATATATTTTGTCAGTTCAATCCTTCTCCTGCCCGTCTCTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5967631 342 +   6154872 CAGGACCAAAGGAATGGATGGAGGCATTAAAGGTATGAATGAGAATGGGTGATAATTTCCCTTTCTCTGAGCTGGGGAGTCCCATTGCAAGTGTGGGAATAGAAATGTCCAGTGTAACCATTCAGAGATGACAGATACTGCCCTGACAACAGCCACAAAATCAAACCATGATGTGCCTCCCTGGGCTCC-CTGGCTCTGGGCTGCTGCTTTCTTGTATTGAGAATCTAAGAGGTGCTGAGCATTCAGTTAAAATGGGACTCGAGGGTTCCTGCATTGTCCTCTGCCTTAATTGCATTTGAAAATATATTTTGTCAGTTCAATCCTTCTCCTGCCCGTCTCTGt
i gorGor5.CYUI01015250v1   C 0 I 309
s nomLeu3.chr1a            74673406 343 + 122973662 CAGGACCAAGGGAATGGGTGGAGGCATTAAAGGTATAAATGAGCATGGGTGATAATTTCCCTTTCTCTGAGCTGGGGAGTCCCATTACAAGGGTGGGAATAGAAATGTCCAGTGTGACCATTCAGAGATGACAGATACTGCCCTGAAAACAGCCAAAAAATTAAAACATGATGTGCCTCCCTGGGATCCTTTGGCTCTGGGCTGTTACTTTCTTTTCTTGAGAATCTAAGAGGTGCTGAGCATTCAGTTAAAACGGGACACGAGGGTTCCTGCATTGTCCTCTGCCTTAATTGCATTTGAAAATACATTTTGTCAGTTCAATCCTCCTCCCACCCCTCTCTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30161238 342 + 172585720 CAGGACCAAGGGAGTGGGTGGAGGCGTTAAAGGTATAAATGAGCGTGGGTGATAATTTCCCTTTCTCTGAGCTGGGGAGTCCCATTACAAGGGTGGGGATAGAAATATCCAGTGTTACCATTCAGAGATGCCAGATACCGCTCTGAAAACAGCCAAAATATGAAAACATGATGCGCCTCCCTGGGATCC-TTGGCTCCGGGCTGCTGCTTTCTTCTATTGAGAATCCAGGAGGTGCTGAGCATTCAGTTAAAAGGGGGCATGAGGGTTCCTGCATTGTCCTCTGCCTTAATTGCATTTGAAAATACATTTTGTCAGTTCAATCCTTCTCCCACCCCTCTCTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29824699 342 - 170955103 CAGGACCAAGGGAGTGGGTGGAGGCATTAAAGGTATAAATGAGCGTGGGTGATAATTTCCCTTTCTCTGAGCTGGGGAGTCCCATTACAAGGGTGGGGATAGAAATATCCAGTGTTACCATTCAGAGATGCCAGATACCGCTCTGAAAACAGCCAAAATATTAAAACATGATGCGCCTCCCTGGGCTCC-TTGGCTCCGGGCTGCTGCTTTCTTCTATTGAGAATCCAGGAGGTGCTGAGCATTCAGTTAAAAGGGGGCATGAGGGTTCCTGCATTGTCCTCTGCCTTAATTGCATTTGAAAATACATTTTGTCAGTTCAATCCTTCTCCCACCCCTCTCTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2874020 342 -   2996164 CAGGACCAAGGGAGTGGGTGGAGGCATTAAAGGTATAAATGAGCATGGGTGATAATTTCCCTTTCTCTGAGCTGGGGAGTCCCATTACAAGGGTGGGGATAGAAATATCCAGTGTTACCATTCAGAGATGCCAGATACCGCTCTGAAAACAGCCAAAATATTAAAACATGATGCGCCTCCCTGGGCTCC-TTGGCTCCGGGCTGCTGCTTTCTTCTATTGAGAATCCAGGAGGTGCTGAGCATTCAGTTAAAAGGGGGCATGAGGGTTCCTGCATTGTCCTCTGCCTTAATTGCATTTGAAAATACATTTTGTCAGTTCAATCCTTCTCCCACCCCTCTCTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     622187 342 +    766320 CAGGACCAAGGGAGTGGGTGGAGGCATTAAAGGTATAAATGAGCATGGGTGATAATTTCCCTTTCTCTGAGCTGGGGAGTCCCATTACAAGGGTGGGGATAGAAATGTCCAGTGTTACCATTCAGAGATGCCAGATACCGCTCTGAAAACAGCCAAAAAATTAAAACATGATGCGCCTCCCTGGGCTCC-TTGGCTCCGGGCTGCTGCTTTCTTCTATTGAGAATCCAGGAGGTGCTGAGCATTCAGTTAAAAGGGGGCATGAGGGTTCCTGCATTGTCCTCTGCCCTAATTGCATTTGAAAATACATTTTGTCAGTTCAATCCTTCTCCCACCCCTCTCTGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29078034 342 -  71996105 CAGGACCAAGGGAGTGGGTGGAGGCATTAAAGGTATAAATGAGCATGGGTGATAATTTCCCTTTCTCTGAGCTGGGGAGTCCCATTACAAGGGTGGGGATAGAAATGTCCAGTGTTACCATTCAGAGATGCCAGATACCGCTCTGAAAACAGCCAAAATATTAAAACATGATGCGCCTCCCTGGGCTCC-TTGGCTCTGGGCTGCTGCTTTCTTCTATTGAGAATCCAGGAGGTGCTGAGCATTCAGTTAAAAGGGGGCATGAGGGTTCCTGCATTGTCCTCTGCCTTAATTGCGTTTGAAAATACATTTTGTCAGTTCAGTCCTTCTCCCACCCCTCTCTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      14475 342 +    119286 CAGGACCAAGGGAGTGGGTGGAGGCATTAAAGGTATAAATGAGCATGGGTGATAATTTCCCTTTCTCTGAGCTGGGGAGTCCCATTACAAGGGTGGGGATAGAAATGTCCAGTGTTACCATTCACAGATGCCAGATACCGCTCTGAAAACAGCCAAAAAATTAAAACATGATGCGCCTCCCTGGGCTCC-TTGGCTCCAGGCTGCTGCTTTCTTCTATTGAGAATCCAGGAGGTGCTGAGCATTCAGTTAAAAGGGGGCATGAGGGTTCCTGCATTGTCCTCTGCCTTAATTGCATTTGAAAATACATTTTGTCAGTTCAATCCTTCTCCCACCCCTCTCTGT
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2730688 342 -   3067355 CAGGACCAAGGGAGTGGGTGGAGGCATTAAAGGTATAAATGAGCATTGGTGACAATTTCCCTTTCTCTGAGCTGGGGAGTCCCATTACAAGGGTAGGGATAGAAATGTCCAGTGTTACCATTCAGAGATGCCAGATACCGCTCTGAAAACAGCCAAAAAATTAAAACATGATGTGCCTCCCTGGGCTCC-TTGGCTCTGGGCTGCTGCTTTCTTCTATTGAGAATCTAGGAGGTGCTGAGCATTCAGTTAAAAGGGGGCATGAGGGTTCCTGCATTGTCCTCTGCCTTAATTGCATTTGAAAATACATTTTGTCAGTTCAATCCTTCTCCCACCCCTCTCTGT
i colAng1.NW_012115566v1   C 0 C 0
e aotNan1.NW_018509740v1     386733 458 -    457564 I
e cebCap1.NW_016107755v1     314790 472 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=1313584.000000
s hg38.chr6_GL000254v2_alt   971594 224 +   4827813 TTCTCTTTTTAAAGAAGCTGAACATTGGCACCTTCAAAAGAAAATTGCTAACATGtgaaataatatattg---tctaggatttagttgaaaataacctggtgttgggctatggttgaggatgtagataaatcaagagtgggtgttactgagtgaagggtacagtgaaggttactttactcttctgtctacttttgtgtttgcttaaaatatttgtacaagtttaaaa
s panTro5.chr6             29934334 224 + 175400573 TTCTCTTTTTAAAGAAGCTGAACATTGGCACCTTCAAAAGAAAATTGCTAACATgtgaaataatatattg---tctaggatttagttgaaaataacctggtgttgggctatggttgaggatgtagataaatcaagagtgggtgtgactgagtgaagggtacagtgaaggtcactttactcttctgtctacttttgtgtttgcttaaaatatttgtacaagtttaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30167941 224 + 173848474 TTCTCTTTTTAAAGAAGCTGAACATTGGCACCTTCAAAAGAAAATTGCTAACATgtgaaataatatattg---tctaggatttagttgaaaataacctggtgttgggctatggttgaggatgtagataaatcaagagtgggtgtgactgagtgaagggtacagtgaaggtcactttactcttctgtctacttttgtgtttgcttaaaatatttgtacaagtttaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5968282 224 +   6154872 TTCTCTTTTTAAAGAAGCTGAACATTGGCATCTTCAAAAGAAAATTGCTAACTTgtgaaataatatattg---tctaggatttagctgaaaataacctggtgttgggctatggttgaggatgtagataaatcaagagtgggtgtgactgagtgaagggtacagtgaaggtcactttactcttctgtctacttttgtgtttgcttaaaatatttgtacaagtttaaaa
i gorGor5.CYUI01015250v1   I 309 C 0
s nomLeu3.chr1a            74673749 224 + 122973662 TTCTCTTTTTAAAGAAGCTGAACATTGGCATCTTCAAAAGAAAATTGCTAACATGGgaaataatatattg---tctaggatttagctgaaaataacctggcgttgggttatggttgaggatgtagataaatcaagagtgggtgtgactgagtgaagggtacagtgaaggtcactgtactcctctgtctacttttgtgtttgcttaaaatatttgtacaagttaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30161580 227 + 172585720 TTCTCTTTTTAAAGAAGCTGAACATTGGCATCTTCAAAAGAAAACTGCTAACATgtgaaataatatattgtattctaggatttagttgaaaataacctggtgttgggttatggttgaggatgtagataaatcaagagtgggtgtgactgagtgaagggtacagtgaaggtcactgtactcttctctctacttttgtgtttgtttaaaatatttgtacaagtttaaaa
i rheMac8.chr4             C 0 I 313
s macFas5.chr4             29825041 227 - 170955103 TTCTCTTTTTAAAGAAGCTGAACATTGGCATCTTCAAAAGAAAACTGCTAACATGtgaaataatatattgtattctaggatttagttgaaaataacctggtgttgggttatggttgaggatgtagataaatcaagagtgggtgtgactgagtgaagggtacagtgaaggtcactgtactcttctctctacttttgtgtttgtttaaaatatttgtacaagtttaaaa
i macFas5.chr4             C 0 I 312
s macNem1.NW_012011356v1    2874362 227 -   2996164 TTCTCTTTTTAAAGAAGCTGAACATTGGCATCTTCAAAAGAAAACTGCTAACATGTGAAATAATATATTGTATTCTAGGATTTAGTTGAAAATAACCTGGTGTTGGGTTATGGTTGAGGATGTAGATAAATCAAGAGTGGGTGTGActgagtgaagggtacagtgaaggtcactgtactcttctctctacttttgtgtttgtttaaaatatttgtacaagtttaaaa
i macNem1.NW_012011356v1   C 0 I 313
s cerAty1.NW_012002711v1     622529 227 +    766320 TTCTCTTTTTAAAGAAGCTGAACATTGGCATCTTCAAAAGAAAACTGCTAACATGTGAAATAATATATTGTATTCTAGGATTTAGTTGAAAATAACCTGGTATTGGGTTATGGTTAGGGATGTAGATAAATCAAGAGTGGGTGTGActgagtgaagggtacagtaaaggtcactgtactcttctctctacttttgtgtttgtttaaaatatttgtacaagtttaaaa
i cerAty1.NW_012002711v1   C 0 I 333
s chlSab2.chr17            29078376 227 -  71996105 TTCTCTTTTTAAAGAAGCTGAACATTGGCATCTTCAAAAGAAAACTGCTAACATGtgaaataatacgttgtattctaggatttagttgaaaataacccggtggtgggttatggttgaggatgtagataaatcaagagtgggtgtgactgagtgaagggtacagtgaaggtcactgtactcttctctctacttttgtgtttgtttaaaaCATTTGTACAAGTTTAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      14817 227 +    119286 TTCTCTTTTTAAAGAAGCTGAACATTGGCATCTTCAAAAGAAAACTGCTAACATGTGAAATAATATATTGTATTCTAGGATTTAGTTGAAAATAACCTGGTGTTGGGTTATGGTTGAGGATGTAGATAAATCAAGAGTGGGTGTGActgagtgaagggtacagtaaaggtcactgtactcttctctctacttttgtgtttgtttaaaatatttgtacaagtttaaaa
i manLeu1.NW_012101411v1   C 0 I 314
s colAng1.NW_012115566v1    2731030 227 -   3067355 TTCTCTTTTTAAAGAAGCTGAACATTGGCATCTTCAAAAGAAAACTGCTAACATGtgaaataatatattgtattctaggatttagttgaaaataacctggtgttgggttatggttgaggatgttgataaatcaagagtggatgtgactgagtgaagggtacagtgaaggtcactgtactcttctctctacttttgtgtttgtttaaaatatttgtacaagtttaaaa
i colAng1.NW_012115566v1   C 0 C 0
e aotNan1.NW_018509740v1     386733 458 -    457564 I
e cebCap1.NW_016107755v1     314790 472 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=38356.000000
s hg38.chr6_GL000254v2_alt   971818 7 +   4827813 aaataag
s panTro5.chr6             29934558 7 + 175400573 aaataag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30168165 7 + 173848474 aaataag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5968506 7 +   6154872 aaataag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74673973 7 + 122973662 aaaTAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30162120 7 + 172585720 aaaTAAG
i rheMac8.chr4             I 313 I 1
s macFas5.chr4             29825580 7 - 170955103 aaaTAAG
i macFas5.chr4             I 312 I 1
s macNem1.NW_012011356v1    2874902 7 -   2996164 aaaTAAG
i macNem1.NW_012011356v1   I 313 I 1
s cerAty1.NW_012002711v1     623089 7 +    766320 aaataaG
i cerAty1.NW_012002711v1   I 333 I 1
s chlSab2.chr17            29078603 7 -  71996105 TAATAAg
i chlSab2.chr17            C 0 I 321
s manLeu1.NW_012101411v1      15358 7 +    119286 aaaTAAG
i manLeu1.NW_012101411v1   I 314 I 1
s colAng1.NW_012115566v1    2731257 7 -   3067355 TAATAAg
i colAng1.NW_012115566v1   C 0 I 363
e aotNan1.NW_018509740v1     386733 458 -    457564 I
e cebCap1.NW_016107755v1     314790 472 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=910.000000
s hg38.chr6_GL000254v2_alt   971825 1 +   4827813 a
s panTro5.chr6             29934565 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30168172 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5968513 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74673980 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
e aotNan1.NW_018509740v1     386733 458 -    457564 I
e cebCap1.NW_016107755v1     314790 472 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I
e colAng1.NW_012115566v1    2731264 363 -   3067355 I
e manLeu1.NW_012101411v1      15365 1 +    119286 I
e chlSab2.chr17            29078610 321 -  71996105 I
e cerAty1.NW_012002711v1     623096 1 +    766320 I
e macNem1.NW_012011356v1    2874909 1 -   2996164 I
e macFas5.chr4             29825587 1 - 170955103 I
e rheMac8.chr4             30162127 1 + 172585720 I

a score=140824.000000
s hg38.chr6_GL000254v2_alt   971826 28 +   4827813 aCCAGGGTTACCAGGGGGCATGGCATAT
s panTro5.chr6             29934566 28 + 175400573 aCCAGGGTTACCAGGGGGCATGGCATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30168173 28 + 173848474 aCCAGGGTTACCAGGGGGCATGGCATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5968514 28 +   6154872 aCCAGGGTTACCAGGGGGCATGGCATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74673981 28 + 122973662 ACCAGGGTTACCAGGGGGCATGGCATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30162128 28 + 172585720 ACCAGGGTTACCAGGGGGTATGGTATAT
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29825588 28 - 170955103 ACCAGGGTTACCAGGGGGTATGGTATAT
i macFas5.chr4             I 1 C 0
s macNem1.NW_012011356v1    2874910 28 -   2996164 ACCAGGGTTACCAGGGGGTATGGTATAT
i macNem1.NW_012011356v1   I 1 C 0
s cerAty1.NW_012002711v1     623097 28 +    766320 ACCAGGGTTACCAGGGGGCATGGTATAT
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17            29078931 28 -  71996105 aCCAGGGTTACCAGGGGGCATGGTATAT
i chlSab2.chr17            I 321 C 0
s manLeu1.NW_012101411v1      15366 28 +    119286 ACCAGGGTTACCAGGGGGCATGGTATAT
i manLeu1.NW_012101411v1   I 1 C 0
e aotNan1.NW_018509740v1     386733 458 -    457564 I
e cebCap1.NW_016107755v1     314790 472 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I
e colAng1.NW_012115566v1    2731264 363 -   3067355 I

a score=2831496.000000
s hg38.chr6_GL000254v2_alt   971854 492 +   4827813 GCTGAATAATCATGAGATACCGGTTATAATTTCAAACAAATCTCCAATAAAAATAGATAATTTGAAGTCAAACCACAGGGACAAAATGTTTTTAGATGTCTCCAAATTCCTCACTTCCCTCCTCTAAATTCAGGTGGGTCACTTCATACTTTCTCCCAACCGCAGGTTCCCAATAGGCAGGTCCTAGAGCCCAACCTTGGTGGGGCAGGGAGTAGGGATTTAAAAACTGCATGATGATCAACAGCAGGAAAGAGGATTGGGGCTGAGAGGGGAGGAGAGGCAGGCAGGAGACCCCTGGGGAGTTGCTGCCCCAAGGAACTCCTTCTTCACCCTCTGAGAGAAAGTGTCACAGGACCACAGACCCTTGGTCTTCATAGGTCCCATAACCTCCCCCGAATTGTATGTAAAATTGTGTGGGAATGCAGGTGAGTGCATTTCAGCTGGGGCTGGCTTTGACAAGGCTGTGGCCTTCAGTAGATATCAAAGTAGTCA
s panTro5.chr6             29934594 491 + 175400573 GCTGAATAATCATGAGATACCGGTTATAATTTCAAACAAATCTCCAATAAAAATAGATAATTTGAAGTCAAACCACAGGGACAAAATGTTTTTAGATGTCTCCAAATTCCTCACTTCCCTCCTCTAAATTCAGGTGGGTCACTTCATACTTTCTCCCAACTGCAGGTTCCCAATAGGCAGGTCCTAGAGCCCAACCTTGGTGGGGCAGGGAGTAGGGATTTAACAACTGCATGATGATCAACAGCAGGAAAGAGGATTGGGGCTGAGAAGGGAGTAGAGGCAGGCAGGAGACCCCTGGGGAGTTGCTGCCCCAAGGAACTCCTTCTTCACCCTCTGAGAGAAAGTGTCACAGGACCACAGACCCTTGGTCTTCATAGGTCCCATAACCTCCCCCGAATTGTATGTAAAA-TGTGTGGGAATGCAGGTGAGTGCATTTCAGCTGGGGCTGGCTTTGACAAGGCTGTGGCCTTCAGTAGATATCAAAGTAGTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30168201 491 + 173848474 GCTGAATAATCATGAGATACTGGTTATAATTTCAAACAAATCTCCAATAAAAATAGATAATTTGAAGTCAAACCACAGGGACAAAATGTTTTTAGATGTCTCCAAATTCCTCACTTCCCTCCTCTAAATTCAGGTGGGTCACTTCATACTTTCTCCCAACTGCAGGTTCCCAATAGGCAGGTCCTAGAGCCCAACCTTGGTGGGGCAGGGAGTAGGGATTTAACAACTGCATGATGATCAACAGCAGGAAAGAGGATTGGGGCTGAGAAGGGAGTAGAGGCAGGCAGGAGACCCCTGGGGAGTTGCTGCCCCAAGGAACTCCTTCTTCACCCTCTGAGAGAAAGTGTCACAGGACCACAGACCCTTGGTCTTCATAGGTCCCATAACCTCCCCCGAATTGTATGTAAAA-TGTGTGGGAATGCAGGTGAGTGCATTTCAGCTGGGGCTGGCTTTGACAAGGCTGTGGCCTTCAGTAGATATCAAAGTAGTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5968542 490 +   6154872 GCTGAATAATCATGAGATACCAGTTATAATTTCAAACAAATCTCCAATAAAAATAGATAATTTTAAGTCAAACCACAGGGACAAAATGTTTTTAGATGTCTCCAAATTCCTCACTTCCCTCCTCTAAATTCAGGTGGGTCACTTCGTACTTTCTCCCAACCGCAGGTTCCCAATAGGCAGGTCCTAGAGCCCAACCTTGGTGGGGCAGGGAGTAGGGATTTAAAAACTGCATGATGATCAACAGCAGGAAAGAGGATTGGGGCTGAGA-GGGAGGAGAGGCAGGCAGGAGACCCCTGGGGAGTTGCTGCCCCAAGGAACTCCTTCTTCACCCTCTGAGAGAAAGTGTCACAGGACCACAGACCCTTGGTCTTCATAGGTCCCATAACCTCCCCCGAATTGTATGTAAAATTGTGTGGGAATGTA-GTGAGTGCATTTCAGCTGGGGCTGGCTTTGACAAGGCTGTGGCCCTCAGTAGATATCAAAGTAGTCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74674009 492 + 122973662 GCTGAAGAATCATGAAATACTGGTTATAATTTCAAACAAATCTCCAATAAAAATAGATAATTTGAAGTAAAACCACAGGGACAAAATGTTTTTAGATATCTCCAGATTCCTTACTTCTCTCCTGTAAATTCAGCTGGGTCACTTCATACTTTCTCCCAGCCGCAGGTTCCCAATAGGCAGGTCCTGGAGCCCAGTCTTGGTGGGGCAGGGAGTAGGGATTTAAAAACTGCATGATGATCAACAGCAGGAATGAGGATTGGGGCTGAGAGGGGAGGAGAGGCAGGCAGGAGGCCCCTGGGGAGTTGCTGCCGCAAGGAACTCCTTCTTCACCCTCTGAGAGAAAGGGTAACAGGACTACAGACCCTtggtcttcatgggtcccataacctcccccagattgtatgtaaaattgtgtgggaatgCAGATGAGTGCATTTCAGCTGCGGCTGACTTTGACAAGGCTGTGGCCTTCAGCAGATATCAAAGTAGTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30162156 490 + 172585720 GCTGAAGAATCATGAGATACTGGTTATAATTTCAAA-AAATCTCCAATAAAAATAGATAATTTAAAGTAAAACCACAGGAACAAAATGTTTTTAGATATCTCCAAATTCCTCACTTCCCTCCTCTAAATTCAGGTGGGTCACTTCATACTTTCTCCCATCCGCA-GTTCCCAATAGGCAGGTCCTGGAGCCCAACCGTGGTGGGGCAGGGAGTGGGGATTTAAAAACTGCATGATGAGCACTAGCAGGAAAGAGGATTGGCGCTGAGAGGGGAGGAGGGGCAGGCAGGAGACCCCTGGGGAGTTGCTGCTCCAAGGAACTCCTTTTTCACCCTCTGAGAGAAAGTGTCACAGGACCACAGACCCTTGGTCTTCACGGGTCCCACAACCTCCCCCAAATTGCATGTAAAATTGTGTGGGAATGCAGGTGAGTGCATTTCAGCTGGGGCTGGCTTTGGCAAGGCTGTGGCCTTCAGTAGATATCAAAGCAGTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29825616 490 - 170955103 GCTGAAGAATCATGAGATACTGGTTATAATTTCAAA-AAATCTCCAATAAAAATAGATAATTTAAAGTAAAACCACAGGAACAAAATGTTTTTAGATATCTCCAAATTCCTCACTTCCCTCCTCTAAATTCAGGTGGGTCACTTCATACTTTCTCCCATCCGCA-GTTCCCAATAGGCAGGTCCTGGAGCCCAACCGTGGTGGGGCAGGGAGTGGGGATTTAAAAACTGCATGATGAGCACTAGCAGGAAAGAGGATTGGCGCTGAGAGGGGAGGAGGGGCAGGCAGGAGACCCCTGGGGAGTTGCTGCTCCAAGGAACTCCTTTTTCACCCTCTGAGAGAAAGTGTCACAGGACCACAGACCCTTGGTCTTCACGGGTCCCACAACCTCCCCCAAATTGCATGTAAAATTGTGTGGGAATGCAGGTGAGTGCATTTCAGCTGGGGCTGGCTTTGGCAAGGCTGTGGCCTTCAGTAGATATCAAAGCAGTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2874938 490 -   2996164 GCTGAAGAATCATGAGATACTGGTTATAATTTCAAA-AAATCTCCAATAAAAATAGATAATTTAAAGTAAAACCACAGGAACAAAATGTTTTTAGATATCTCCAAATTCCTCACTTCCCTCCTCTAAATTCAGGTGGGTCACTTCATACTTTCTCCCATCCGCA-GTTCCCAATAGGCAGGTCCTGGAGCCCAACCGTGGTGGGGCAGGGAGTGGGGATTTAAAAACTGCATGATGAGCACTAGCAGGAAAGAGGATTGGCGCTGAGAGGGGAGGAGGGGCAGGCAGGAGACCCCTGGGGAGTTGCTGCTCCAAGGAACTCCTTTTTCACCCTCTGAGAGAAAGTGTCACAGGACCACAGACCCTTGGTCTTCACGGGTCCCACAACCTCCCCCAAATTGCATGTAAAATTGTGTGGGAATGCAGGTGAGTGCATTTCAGCTGGGGCTGGCTTTGGCAAGGCTGTGGCCTTCAGTAGATATCAAAGCAGTCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     623125 491 +    766320 GCTGAAGAACCATGAGATACTGATTATAATTTCAAACAAATCTCCAATAAAAATAGATAATTTAAAGTAAAACCACAGGAACAAAATGTTTTTAGATATCTCCAAATTCCTCACTTCCCTCCTCTAAATTCAGGTGGGTCACTTCATACTTTCTCCCATCCGCA-GTTCCCAATAGGCAGGTCCTGGAGCCCAATCGTGGTGGGGCAGGGAGTGGGGATTTAAAAACTGCATGATGAGCACCAGCAGGAAAGAGGATTGGTGCTGAGAGGGGAGGAGGGGCAGGCAGGAGACCCCTGGGGAGTTGCTGCTCCAAGGAACTCCTTTTTCACCCTCTGAGAGAAAGTGTCACAGGACCACAGACCCTtggtcttcacgggtcccataacctcccccaaattgtatgtaaaattgtgtgggaatgcaggtgagtgcatttcatctggggCTGGCTTTGGCAAGGCTGTGGCCTTCAGTAGATATCAAAGCAGTCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29078959 490 -  71996105 GCTGAAGAACCATGAGATACTGGTTATAATTTCAAACAAATCTCCAATAAAAATAGATAATTTAAAGTAAAACCACAGGAACAAGATG-TTTTAGATATCTCCAAATTCCTCACTTCCCTCCTCTAAATTCAGGTGGGTCACTGCATACTTTCTCCCATCCGCA-GTTCCCAATAGGCAGGTCCTGGAGCCCAACCGTGGTGGGGCAGGGAGTGGGGATTTAAAAACTGCATGATGAGCACCAGCAGGAAAGAGGATTGGTGCTAAGAGGGGAGGAGGGGCAGGCAGGAGACCCCTGGGGAGTTGCTGCTCCAAGGAACTCCTTTTTCACCCTCTGAGAGAAAGTGTCACAGGACCACAGACCCTtggtcttcacgggtcccataacctcccccagattgtatgtaaaattgtgtgggaatgCAGGTGAGTGCATTTCAGCTGGGGCTGGCTTTGGCAAGGCTGTGGCCTTCAGTAGATATCAAAGCAGTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      15394 491 +    119286 GCTGAAGAACCATGAGATACTGGTTATAATTTCAAACAAATCTCCAATAAAAATAGATAATTTAAAGTAAAACCACAGGAACAAAATGTTTTTAGATATCTCCAAATTCCTCACTTCCCTCCTCTAAATTCAGGTGGGTCACTTCATACTTTCTCCCATCCGCA-GTTCCCAATAGGCAGGTCCTGGAGCCCAACCGTGGTGGGGCAGGGAGTGGGGATTTAAAAACTGCATGATGAGCACCAGCAGGAAAGAGGATTGGTGCTGAGAGGGGAGGAGGGGCAGGCAGGAGACCCCTGGGGAGTTGCTGCTCCAAGGAACTCCTTTTTCACCCTCTGAGAGAAAGTGTCACAGGACCACAGACCCTtggtcttcacgggtcccataacctcccccaaattgtatgtaaaattgtgtgggaatgcaggtgagtgcatttcatctggggCTGGCTTTGGCAAGGCTGTGGCCTTCAGTAGATATCAAAGCAGTCA
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2731627 491 -   3067355 GCTGAAGAATCATGAGATACTGGTTATAATTTCAAACAAATCTCCAATAAAAATAGATAATTTAAAGTAAAACCACAGGAACAAAATGTTTTTAGATATCTCCAAATTCCTCACTTCCCTCCTCTAAATTCAGGTGGGTCACTTCATACTTTCTCCCATCCGCA-GTTCCCAATAGGCAGGTCCTGGAGCCCAACCGTGGTGGGGCAGGGAGTGGGGATTTAAAAACTGCATGATGAGCACCAGCAGGAAAGAGGATTGGCGCTGAGAGGGGAGGAGGGGCAGGCAGGAGGCCCCTGGGGAGCTGCTGCTCCAAGGAACTCCTTTTTCACCCTCTGAGAGAAAGTGTCACAGGACCACAGACCCTTGGTCTCCACGGGTCCCATAACCTCCCCCAAACTGCATGTAAAATTGTGTGGGAATGCAGGTGAGTGCATTTCAGCTGGGGCTGGCTTTGGCAAGGCTGTGGCCTTCAGTAGATACCAAAGCAGTCA
i colAng1.NW_012115566v1   I 363 C 0
e aotNan1.NW_018509740v1     386733 458 -    457564 I
e cebCap1.NW_016107755v1     314790 472 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=2800614.000000
s hg38.chr6_GL000254v2_alt   972346 388 +   4827813 TCTAGGTCTCGTGTAGATGATGGAAAACTCGATGGGAGGGAGACACGGTGCCTTGACCCAGAGTCAATG-CCAATAaacttggctaggacatagtacccagtcatttaatcaaaacctaatctagatgttgctgtgaagatatttagtacatgtggttaacatttacaatcagttgactttatgaaaaggaaattaccctcaataatgtagatggacctcatccaatcag-tagaaggctttaagagcagaaactacagtttcccagaaaagaagaaattctgtcttaagactaccatatcaacttctgtctgcattttcagcctgctggcgt-atcct-acagatttcacacttgccaccgtaataattgcatgagtcagtttcataacac
s panTro5.chr6             29935085 388 + 175400573 TCTAGGTCTCGTGTAGATGATGGAAAACTCGATGGGAGGGAGACACGGTGCCTTGACCCAGAGTCAATG-CCAATAaacttggctaggacatagtacccagtcatttaatcgaaacctaatctagatgctgctgtgaagatatttagtacatgtggttaacatttacaatcagttgactttatgaaaaggaaattaccctcaataatgtagatggacctcatccaatcag-tagaaggctttaagagcagaaactacagtttcccagaaaagaagaaattctgtcttaagactaccatatcaacttctgtctgcattttcagcctgctggcgt-atcct-acagatttcacacttgccaccgtaataattgcatgagtcagtttcataacac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30168692 388 + 173848474 TCTAGGTCTCATGTAGATGATGGAAAACTCGATGGGAGGGAGACACGGTGCCTTGACCCAGAGTCAATG-CCAATAaacttggctaggacatagtacccagtcatttaatcgaaacctaatctagatgctgctgtgaagatatttagtacatgtggttaacatttacaatcagttgactttatgaaaaggaaattaccctcaataatgtagatggacctcatccaatcag-tagaaggctttaagagcagaaactacagtttcccagaaaagaagaaattctgtcttaagactaccatatcaacttctgtctgcattttcagcctgctggcgt-atcct-acagatttcacacttgccaccataataattgcatgagtcagtttcataacac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5969032 388 +   6154872 TCTAGGTCTCGTGTAGATGATGGAAAACTCGATGGGAGGGAGACACGGTGCCTTGACCCAGAGTCAATG-CCAATAaacttggctaggacatagtacccagtcatttaatcgaaacctaatctagatgttgctgtgaagatatttagtacatgtggttaacatttacaatcaattgactttatgaaaaggaaattaccctcaataatgtagaggaacctcatccaatcag-tagaaggctttaagagcagaaactacagtttcccagaaaagaagaaattctgtcttaagactaccatatcaacttctgtctgcattttcagcctgctggcgt-atcct-acagatttcacacttgccaccgtaataattgcatgagtcagtttcataacac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74674501 388 + 122973662 TCTAGGTCTCGTGTAAATGATGGAAAACTCAATGGGAGGAAGATACGGTGCCTTGATCCAGAGTCAATG-CCAgtgaacttggctaggatgtagtacctagtcatttaatcaaaacctaatctaaatgttgctgtgaagatatttagtacatgtggttaacatttacaatcagttgactttatgaaaaggaaattaccctcaataatgtagatgggcctcatccaatcag-tagaaagctttaagggcagaaactgcagtttcccagaaaagaagaaattctgtcttaagactaccatatcaacttctgtctgcattttcagcctgctggctt-atcct-acagatttcatacttgccaccctaataactgcatgagtcagtttcaaaacac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30162646 372 + 172585720 TCTAGGTGTCGTGCAGATGATGGAAAAC----------------ATGGTGCCTTGACCCAGAGTCAATG-CCAAAGaactcggctaggacatagtacccagtcatttaatcaaaacctaatctagatgttactatgaagatatttagtacaagtggttaacatttacaatcagttgacttaatgaaaaggaaattaccctcaataatgtagatgggcctcatccaatcaa-cggaaggctttaagagcagaaactgcagtttcccagaaaagaagaaattttgccttaagactacaatatcaacttctgtctgcattttcagcctgctggctt-atcct-acagatttcctacttgccacccgaataattgcatgagtcagtttcataacac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29826106 372 - 170955103 TCTAGGTCTCATGCAGATGATGGAAAAC----------------ATGGTGCCTTGACCCAGAGTCAATG-CCAAAGaactcggctaggacatagtacccagtcatttaatcaaaacctaatctagatgttactatgaagatatttagtacatgtggttaacatttacaatcagttgacttaatgaaaaggaaattaccctcaataatgtagatgggcctcatccaatcaa-cagaaggctttaagagcagaaactgcagtttcccagaaaagaagaaattttgccttaagactacaatatcaacttctgtctgcattttcagcctgctggctt-atcct-acagatttcctacttgccacccaaataattgcatgagtcagtttcataacac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2875428 372 -   2996164 TCTAGGTCTCGTGCAGATGATGGAAAAC----------------ATGGTGCCTTGACCCAGAGTCAATG-CCAAAGaactcggctaggacatagtacccagtcatttaatcaaaacctaatctagatgttactatgaagatatttagtacatgtggttaacatttacaatcagttgacttaatgaaaaggaaattaccctcaataatgtagatgggcctcatccaatcaa-cggaaggctttaagagcagaaactgcagtttcccagaaaagaagaaattttgccttaagactacaatatcaacttctgtctgcattttcagcctgctggctt-atcct-acagatttcctacttgccacccaaataattgcatgagtcagtttcataacac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     623616 367 +    766320 TCTAGGTCTCGTGCAGATGATGGAAAAC----------------ATGGTGCCTTGACCCAGAGTCAATG-CCAAAGaactcggctagggcatggaacccagtcatttaatcaaaacctaatctatatgttgctatgaagatatttagtacatgtggttaacatttacaatcagttgactttatgaaaaggaaattaccctcaataatgtagatgggcctcatccaatcaa-cagaaggctttaagagcagaaactgcagtttcccagaaaagaagaaattctgctt--agactacaatatc-acttctgtctgca-tttcagcctgctggcttgatcctcacagattt-ctactcccca-ccgaataattgca-gagtcagtttcataacac
i cerAty1.NW_012002711v1   C 0 I 163
s chlSab2.chr17            29079449 372 -  71996105 TCTAGGTCTTGTGCAGATGATGGAAAAC----------------ATGGTGCCTTGACCCAGAGTCAATG-CCAAAGaactcggctaggacatagaacccagtcatttaatcaaaacctaatctagatgttgctatgaagatatttagtacatgtggttaacatttacaatcagttgacttaatgaaaaggaaattaccctcaataatgtagatgggcctcatccaatcaa-cagaaggctttaagagcagaaactgcagtttcccagaaaagaagaaattctgccttaagactacaatatcaacttctgtctgcattttcagcctgctggctt-atcct-acagatttcccacttgtcacccgaataattgcatgagtcagtttcataacac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      15885 372 +    119286 TCTAGGTCTCGTGCAGATGATGGAAAAC----------------ATGGTGCCTTGACCCAGAGTCAATG-CCAAAGaactcggctagggcatggaacccagtcatttaatcaaaacctaatctatatgttgctatgaagatatttagtacatgtggttaacatttacaatcagttgactttatgaaaaggaaattaccctcaataatgtagatgggcctcatccaatcaa-cagaaggctttaagagcagaaactgcagtttcccagaaaagaagaaattctgccttaagactacaatatcaacttctgtctgcattttcagcctgctggctt-atcct-acagatttcctacttgccacccgaataattgcatgagtcagtttcataacac
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2732118 372 -   3067355 TCTACGTCTCGTGCAGATGATGGAAAAC----------------ATGGTGCCTTGACCCAGAGTCAAGG-CCAATGaactcggctaggacatattacccactcatttaatcaaaacctaatctagatgttgctatgaagatatttagtacatgtggttaacatttacaatcagttgactttatgaaaaggaaattaccctcaatattgtagatgggcctcatccaatcaa-tagaaggctttaagagcagaaactgcagtttcccagaaaagaagaaattctgccttaagactacaatatcaacttctgtctgcattttcagcctgctggctt-atcct-acagatttcctacttgccaccctaataattgcatgagtcagtttcataacac
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     315262 390 -   1771730 TCTAGGTCTTGTGTAGATGATGGAAAACTGCACGGGAGGGAGTCACAGTGCCTTGACGCAGAGTCAATGCCCAATGCacttggctaggacatagtacccagccatttaaccaaaacctaatctaggtgctgctgtgaagacatttagtacatgtggttaacgtctacaatcaacttactttacgaaaaggagattaccctcaataatgtagatgggcctcatccaatcagttagaaggctttaagagcagaaactgaagcttcccagaaaagcagaaattctgccttaagactacaatatcaacttctgtttgcatttccagcctgcgggctt-atcct-acagatttcatacttgccaccctaataattgcatgactcaatttcataacat
i cebCap1.NW_016107755v1   I 472 C 0
s aotNan1.NW_018509740v1     387191 389 -    457564 TCTAGGTCTTGTGCAGATGATGGAAAACTGCATGGGAGGGAGACACGGTGCCTTGACGGAGAATCAATGCCCAATGCacttggctaggacatagtacccagtcatttaaccaaaacctaatctaggtgctgctgtgaagacatttagtacatgtggttaacgtctacaatcagcttactttacggaaaggagattaccctcaataatgtagatgggcctcatccaatcag-tagaagactttaagagcagaaactgaagtttcccagaaaagcagaaattctgccttaagactacaatatcaacttctgtctgcattttcagcctgctggctt-atcct-acagatttcatacttgccaccctaataattgcatgattcaatttcataacat
i aotNan1.NW_018509740v1   I 458 C 0
e calJac3.chr4             30104189 1649 + 171630274 I

a score=-37781.000000
s hg38.chr6_GL000254v2_alt   972734 27 +   4827813 gaataa----------cacacacacac--------------------------------acacacacac
s panTro5.chr6             29935473 13 + 175400573 gaata--------------------------------------------------------aaacacac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30169080 27 + 173848474 gaataa----------aacacacacac--------------------------------acacacacac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5969420 11 +   6154872 aaata----------------------------------------------------------aaacac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74674889 29 + 122973662 aaataaa--------gcacacacacac--------------------------------acacacacac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30163018  6 + 172585720 gaataa---------------------------------------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29826478  6 - 170955103 gaataa---------------------------------------------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2875800  6 -   2996164 gaataa---------------------------------------------------------------
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29079821  6 -  71996105 gaataa---------------------------------------------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      16257  6 +    119286 gaataa---------------------------------------------------------------
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2732490  8 -   3067355 gaataa-------------------------------------------------------------ac
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     315652 69 -   1771730 gaatAAACACATACCCCCCTCACACACACTCTCTCtatatatatatattctatatatatatatacacac
i cebCap1.NW_016107755v1   C 0 I 2
s aotNan1.NW_018509740v1     387580 37 -    457564 gaatAAACACATAGCCCCCCCCCACAC--------------------------------TTGCACACAC
i aotNan1.NW_018509740v1   C 0 I 1312
e calJac3.chr4             30104189 1649 + 171630274 I
e cerAty1.NW_012002711v1     623983 163 +    766320 I

a score=962511.000000
s hg38.chr6_GL000254v2_alt   972761 162 +   4827813 acacacacacacacct---------------tattggttctgtttctctgatgaatccagaataatacaGATTTTGGTACTTAGAGTGATTCTAGAGGAAGAGAATCCTTTT-AAAACGTTTATAGCCAACAATAAAAAA-CTTTATTAAAAATGTTGAAAAGCATAAAACGGTAATTA
s panTro5.chr6             29935486 162 + 175400573 acacacacacacacct---------------tattggttctgtttctctgatgaatccagaataatacaGATTTTGGTACTTAGAGTGATTCTAGAGGAAGAGAATCCTTTT-AAAACGTTTATAGCCAACAATAAAAAA-CTTTATTAAAAATGTTGAAAAGCATAAAACAGTAATTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30169107 161 + 173848474 acacacacacacacct---------------tattggttctgtttctctgatgaatccagaataatacaGATTTTGGTACTTAGAGTGATTCTAGAGGAAGAGAATCCTTTT-AAAACGTTTATAGCCAACAAT-AAAAA-CTTTATTAAAAATGTTGAAAAGCATAAAACAGTAATTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5969431 162 +   6154872 atacacacacacacct---------------tattggttctgtttctctgatgaatccagaataatgcaGATTTTGGTACTTAGAGTGATTGTAGAGGAAGAGAATCCTTTT-AAAACGTTTATAGCCAACAATAAAAAA-CTTTATTAAAAATGTTGAAAAGCGTAAAACAGTAATTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74674918 140 + 122973662 acacacacacacaccc---------------tattggttctgtttctttgacgaatccagaataatacaGATTTTGGTACTTAGGGTGATTCTAGAGGAAGAGAATCCTTTT-AAAACG-----------------------TTTATTAAAAATGTTGAAAAGCATAAAACAGTAATTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30163024 163 + 172585720 acacacacacacaccc---------------tattggttctgtttctctgatgaatccagaataatacaGAATTTGGTACCTAGAGTGATTCTAGAGGAAGATAATCCTTTT-AAAACGTTTATAGCCAACAATAAAAAATCTTTATTAAAAATGTTGAAATGCATAAAACAGTAATTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29826484 163 - 170955103 acacacacacacaccc---------------tattggttctgtttctctgatgaatccagaataatacaGAATTTGGTACCTATACTGATTCTAGAGGAAGATAATCCTTTT-AAAACGTTTATAGCCAACAATAAAAAATCTTTATTAAAAATGTTGAAATGCATAAAACAGTAATTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2875806 163 -   2996164 atacacacacacaccc---------------tattggttctgtttctctgatgaatccagaataatacaGAATTTGGTACCTATAGTGATTCTAGAGGAAGATAATCCTTTT-AAAACGTTTATAGCCAACAATAAAAAATCTTTATTAAAAATGTTGAAATGCATAAAACAGTAATTA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29079827 162 -  71996105 acacacacacacaccc---------------tgttggttctgtttctctgatgaatccagaA-AATACAGAATTTGGTACCTAGAGTGATTCTAGAGGAAGATAATCCTTTT-AAAACGTTTATAGCCAACAATAAAAAATCTTTATTAAAAATGTTGAAATGCATAAAACAGTAATTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      16263 161 +    119286 --acacacacacaccc---------------tattggttctgtttctctgatgaatccagaataatacaGAATTTGGTACCTAGAGTGATTCTAGAGGACGATAATCCTTTT-AAAACATTTATAGCCAACAATAAAAAATCTTTATTAAAAATGTTGAAAAGCATAAAACAGTAATTA
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2732498 163 -   3067355 acacacacacacaccc---------------tattggttctgtttctctgatgaatccagaataatacaGAATTTGGTACCTAGAGTGATTCTAGAGGAAGATAATCCTTTT-AAAATGTTTATAGCCAACAATAAAAAATCTTTATTAAAAATGTTGAAAAGCATAAAACAGTAATTA
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     315723 178 -   1771730 acatacacacaTatatatgtatgtatgtatatatatgttctgtttctctgacgaacccagaataatacagattttggtacctagagcggttctagaggaacagaatccttttaaaaatgTTTATAGCCAATAATAAAAAAAAATTATT-TAAATGTTGAAAAGTATAAAACAGTAATTA
i cebCap1.NW_016107755v1   I 2 C 0
s aotNan1.NW_018509740v1     388929 178 -    457564 acacacacacacatatatataggtatgtatatatatGTTCTGTTTCTCTGACAAACCCAGAATAATACAggttttggtacctagagtggttctagaggaacagaatcctttt-aaAATGTTTATAGCCAATAATAAAAAAAAATTATTAAAAATATTGAAGAGTATAAAACAGTAATTA
i aotNan1.NW_018509740v1   I 1312 C 0
e calJac3.chr4             30104189 1649 + 171630274 I
e cerAty1.NW_012002711v1     623983 163 +    766320 I

a score=205366.000000
s hg38.chr6_GL000254v2_alt   972923 27 +   4827813 TAAATTAGCAAACACCCAACAAGAAAA
s panTro5.chr6             29935648 27 + 175400573 TAAATTAGCAAACACCCAACAAGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30169268 27 + 173848474 TAAATTAGCAAACACCCAACAAGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5969593 27 +   6154872 TAAATTAGCAAACACCCAACAAGAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74675058 27 + 122973662 TAAATTAGCAAACACCCAACAGGAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30163187 27 + 172585720 TAAATTAGCAAACACCCAACAAGAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29826647 27 - 170955103 TAAATTAGCAAACACCCAACAAGAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2875969 27 -   2996164 CAAATTAGCAAACACCCAACAAGAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     624146 27 +    766320 TAAATTAGCAAACACCCAACAAGAAAA
i cerAty1.NW_012002711v1   I 163 I 82
s chlSab2.chr17            29079989 27 -  71996105 TAAATGAGCAAACATCCAACAAGAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      16424 27 +    119286 TAAATTAGCAAACACCCAACAAGAAAA
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2732661 27 -   3067355 TAAATTAGCAAACACCCAACAAGAAAA
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     315901 27 -   1771730 TAAATTAGCAAACACGCAACAAGACAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     389107 27 -    457564 TAAATTAGCAAACACGAAACACGACAA
i aotNan1.NW_018509740v1   C 0 C 0
e calJac3.chr4             30104189 1649 + 171630274 I

a score=562041.000000
s hg38.chr6_GL000254v2_alt   972950 87 +   4827813 GCACTTATTTTCTTTTCCTTATACAGTACAAGAAAGAGTAATTGGGATCTCATTCACTTTCAGCCACC-ATTTGCCCTAGATGTCCTT
s panTro5.chr6             29935675 87 + 175400573 GCATCTATTTTCTTTTCCTTATACGGTACAAGAAAGAGTAATTGGGATCTCATTCACTTTCAGTCACC-ATTTGCCCTAGATGTCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30169295 87 + 173848474 GCATCTATTTTCTTTTCCTTATACGGTACAAGAAAGAGTAATTGGGATCTCATTCACTTTCAGTCACC-ATTTGCCCTAGATGTCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5969620 87 +   6154872 GCACTTATTTTCTTTTCCTTATACAGTACAAGAAAGAGTAATTGGGCTCTCATTCACTTTCAGCCACC-ATTTGCCCTAGATGTCCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74675085 87 + 122973662 GCAGTTATTTTCTTTTCCTTATACAGTACAAGCAAGAGTAATTGGGATCTTACTCACTTTCAGCCACC-ATTTGCCCTAGATGTCCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30163214 87 + 172585720 GCAGTTATTTTCTTTTCCTTAGACAGTACAAGCAAGAGTAATTGGGATCTTACTCACTTTCAGCCACC-ATTTGCCCTCGATGTCCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29826674 87 - 170955103 GCAGTTATTTTCTTTTCCTTAGACAGTACAAGCAAGAGTAATTGGGATCTTACTCACTTTCAGCCACC-ATTTGCCCTCGATGTCCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2875996 87 -   2996164 GCAGTTATTTTCTTTTCCTTAGACAGTACAAGCAAGAGTAATTGGGATCTTACTCACTTTCAGTCACC-ATTTGCCCTCGATGTCCTT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29080016 87 -  71996105 GCAGTTATTTTCTTTTCCTTAGACAGTACAAGCAAGAGTAATTGGGATCTTACTCACTTTCAGCCACC-ATTTGCCCTAGATGTCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      16451 87 +    119286 GCAGTTATTTTCTTTTCCTTAGACAGTACAAGCAAGAGTAATCGAGATCTTACTCACTTTCAGCCACC-ATTTGCCCTAGATGTCCTT
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2732688 87 -   3067355 GCAGTTATTTTCTTTTCCTTAGACAGTACAAGCAAGAGTAATTGAGATCTTACTCACTTTCAGCCACC-ATTTGCCCTAGATGTTCTT
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     315928 88 -   1771730 GCAGTTATTTTCTTTTCCTTATACAGCACAAACAAGAGTAATTTGGAACTTATTCACTTTCAACCACCAATTTGCCCTAGATGTCCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     389134 87 -    457564 GCAGTTATTTTCTTTTCCTTATACAGCACAAACAAGAGTAATTGGGAACTTATTCACTTTCAACCACC-ATTTGCCCTAGATGTCCTT
i aotNan1.NW_018509740v1   C 0 C 0
e calJac3.chr4             30104189 1649 + 171630274 I
e cerAty1.NW_012002711v1     624173 82 +    766320 I

a score=221294.000000
s hg38.chr6_GL000254v2_alt   973037 31 +   4827813 CACTCAAAACAAGTTTTTAGCTTGTGTTTTT
s panTro5.chr6             29935762 31 + 175400573 CACTCAAAACAAGTTTTTAGCTTGTGTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30169382 31 + 173848474 CACTCAAAACAAGTTTTTAGCTTGTGTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5969707 31 +   6154872 CACTCAAAACAAGTTTTTAGCTTGTGTTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74675172 31 + 122973662 CACTTAAAACAAGTTTTCAGCTTGTGTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30163301 31 + 172585720 CACTTAAAACAAGCTTTTAGCTTGTGTTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29826761 31 - 170955103 CACTTAAAACAAGCTTTTAGCTTGTGTTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2876083 31 -   2996164 CACTTAAAACAAGCTTTTAGCTTGTGTTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     624255 31 +    766320 CACTTAAAACAAGCTTTTAGCTTGTGTTTTT
i cerAty1.NW_012002711v1   I 82 I 50
s chlSab2.chr17            29080103 31 -  71996105 CACTTAAAACAAGTTGTTAGCTTGTGTTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      16538 31 +    119286 CACTTAAAACAAGTTTTTAGCTTGTGTTTTT
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2732775 31 -   3067355 CACTTAAAACAAGTTGTTAGCTTGTGTTTTT
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     316016 31 -   1771730 CAATTAAGTCAACTTTTTAGCTTGTGTTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     389221 30 -    457564 CAATTAAGACAAC-TTTTGGTTTGTGTTTTT
i aotNan1.NW_018509740v1   C 0 C 0
e calJac3.chr4             30104189 1649 + 171630274 I

a score=97188.000000
s hg38.chr6_GL000254v2_alt   973068 13 +   4827813 GGAGTGGAAACTC
s panTro5.chr6             29935793 13 + 175400573 GGAGTGGAAACTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30169413 13 + 173848474 GGAGTGGAAACTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5969738 13 +   6154872 GGAGTGGAAACTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74675203 13 + 122973662 GGAGTGGAAACTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30163332 13 + 172585720 GGAGTGGAAACTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29826792 13 - 170955103 GGAGTGGAAACTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2876114 13 -   2996164 GGAGTGGAAACTC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29080134 13 -  71996105 GGAGTGGAAACTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      16569 13 +    119286 GGAGTGGAAACTC
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2732806 13 -   3067355 GGAGTGGAAACTC
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     316047 13 -   1771730 GGAGTGGAAACTC
i cebCap1.NW_016107755v1   C 0 I 189
s aotNan1.NW_018509740v1     389251 13 -    457564 GGAGTGGAAACTC
i aotNan1.NW_018509740v1   C 0 I 165
e calJac3.chr4             30104189 1649 + 171630274 I
e cerAty1.NW_012002711v1     624286 50 +    766320 I

a score=83050.000000
s hg38.chr6_GL000254v2_alt   973081 16 +   4827813 ACATGGCTACTAAGAA
s panTro5.chr6             29935806 16 + 175400573 ACATGGCTACTAAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30169426 16 + 173848474 ACATGGCTACTAAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5969751 16 +   6154872 ACATGGCTACTAAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74675216 16 + 122973662 ACATGGCTACTAAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30163345 16 + 172585720 ACATGGCTACTAAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29826805 16 - 170955103 ACATGGCTACTAAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2876127 16 -   2996164 ACATGGCTACTAAGAA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29080147 16 -  71996105 ACATGGCTACTAAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      16582 16 +    119286 ACATGGCTACTAAGAA
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2732819 16 -   3067355 ACATGGCTACTAAGAA
i colAng1.NW_012115566v1   C 0 C 0
e aotNan1.NW_018509740v1     389264 165 -    457564 I
e cebCap1.NW_016107755v1     316060 189 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I
e cerAty1.NW_012002711v1     624286 50 +    766320 I

a score=62612.000000
s hg38.chr6_GL000254v2_alt   973097 12 +   4827813 ACAACTCTAAAA
s panTro5.chr6             29935822 12 + 175400573 ACAACTCTAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30169442 12 + 173848474 ACAACTCTAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5969767 12 +   6154872 ACAACTATAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74675232 12 + 122973662 ACAACTCTAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30163361 12 + 172585720 ACGACTCTAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29826821 12 - 170955103 ACAACTCTAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2876143 12 -   2996164 ACGACTCTAAAA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29080163 12 -  71996105 ACGACTCTAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      16598 12 +    119286 ACGACTCTAAAA
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2732835 12 -   3067355 ACAACTCTAAAA
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     389429 12 -    457564 ACAACCCTAATG
i aotNan1.NW_018509740v1   I 165 C 0
e cebCap1.NW_016107755v1     316060 189 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I
e cerAty1.NW_012002711v1     624286 50 +    766320 I

a score=49626.000000
s hg38.chr6_GL000254v2_alt   973109 7 +   4827813 ATGTAAC
s panTro5.chr6             29935834 7 + 175400573 ATGTAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30169454 7 + 173848474 ATGTAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5969779 7 +   6154872 ATGTAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74675244 7 + 122973662 ATGTGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30163373 7 + 172585720 ATGTAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29826833 7 - 170955103 ATGTAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2876155 7 -   2996164 ATGTAAC
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29080175 7 -  71996105 ATGTAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      16610 7 +    119286 ATGTAAC
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2732847 7 -   3067355 ATGTAAC
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     316249 7 -   1771730 ATGTAAC
i cebCap1.NW_016107755v1   I 189 C 0
s aotNan1.NW_018509740v1     389441 7 -    457564 ATGTAAC
i aotNan1.NW_018509740v1   C 0 C 0
e calJac3.chr4             30104189 1649 + 171630274 I
e cerAty1.NW_012002711v1     624286 50 +    766320 I

a score=591489.000000
s hg38.chr6_GL000254v2_alt   973116 78 +   4827813 TTAGACACTCAAAATTCCATGTGCCATGTTAACATGTAATGATGGTTCATATTACAGCATCTCACAATGGGTAAGCAT
s panTro5.chr6             29935841 78 + 175400573 TTAGACACTCAAAATTCCATGTGCCATGTTAACATGTAATGATGGTTCATATTACAGCATCTCACGATAGGTAAGCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30169461 78 + 173848474 TTAGACACTCAAAATTCCATGTGCCATGTTAACATGTAATGATGGTTCATATTACAGCATCTCACGATAGGTAAGCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5969786 78 +   6154872 TTAGACACTCAAAATTCCATGTGCCATGTTAACATGTAATGATGGTTCATATTACAGCATCTCACAATAGGTAAGCAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74675251 78 + 122973662 TTAGGCACTCAACATTCCATGTGCCATGTTAACATATAATGATGGTTCATATTACAGCATCTCACAATAGGTAAGCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30163380 78 + 172585720 TTAGGCACTCAAAATTCCATGTGCCGTGTTAACATGTAATGATGGTTCATACTACAGCCTCTCACAATAGGTAAGCGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29826840 78 - 170955103 TTAGGCACTCAAAATTCCATGTGCTGTGTTAACATGTAATGATGGTTCATACTACAGCCTCTCACAATAGGTAAGCGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2876162 78 -   2996164 TTAGGCACTCAAAATTCCATGTGCCGTGTTAACATGTAATGATGGTTCATACTACAGCCTCTCACAATAGGTAAGCGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     624336 76 +    766320 TTAGGCACTCAAAA-TCCATGTGCCGTGTTAACATGTAATGAT-GTTCATATTACAACCTCTCACAATAGGTAAGCAT
i cerAty1.NW_012002711v1   I 50 I 690
s chlSab2.chr17            29080182 78 -  71996105 TTAGGCACTCAAAATTCCATGTGCCGTGTTAACATGTACTGATGGTTCATATTACAGCCTCTCACAATAGGTAAGCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      16617 78 +    119286 TTAGGCACTCAAAATTCCATGTGCCGTGTTAACATGTAATGATGGTTCATATTACAGCCTCTCACAATAGGTAAGCAT
i manLeu1.NW_012101411v1   C 0 I 610
s colAng1.NW_012115566v1    2732854 78 -   3067355 TCAGGCACTCAAAATTCCATGTGCCATGTTAACATGTAATGATGGTTCATATTACAGCCTCTCACAATAGGTAAGCAT
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     316256 76 -   1771730 TTAGGCACTCAAAATTCCATGTGCCATGCTAAC--GTGATGATGGTTCATATTACAGCATCTCACAATAGGTAAGCAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     389448 78 -    457564 TTAGGCACTCAAAATTCCATGTGCCATGCTAACATGTGATGATGGTTCATATTACAGCATCTAACAATGGGTAAGCAT
i aotNan1.NW_018509740v1   C 0 C 0
e calJac3.chr4             30104189 1649 + 171630274 I

a score=775274.000000
s hg38.chr6_GL000254v2_alt   973194 170 +   4827813 TATTTCCAAAGTAAAATTAAGTCACATTTGTGGTTGCTAGTGAATGCGGCAGAAATGGACCCTGAAGATTCAGGCATTGTTCTGCTCTGGAGTAGGACATCTGTGGCTCCAGCAAACTGTACAAAGGC-----------------TTTT--------------------------------------------------------------------------------------TTTTTTTTAATGTATCTTCCGTGATACTTCAATTATTT
s panTro5.chr6             29935919 171 + 175400573 TATTTCCAAAGTAAAATTAAGTCACGTTTGTGGTTGCTAGTGAATGCGGCACAAATGGACCCTGAAGATTCAGGCATTGTTATGCTCTGGAGTAGGGCTTCTGTGACTCCAGCAAACTGTACAAAGGC----------------TTTTT--------------------------------------------------------------------------------------TTTTTTTTAATGTATCTTCCGTGATACTTCAATTATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30169539 170 + 173848474 TATTTCCAAAGTAAAATTAAGTCACGTTTGTGGTTGCTAGTGAATGCGGCACAAATGGACCCTGAAGATTCAGGCATTGTTCTGCTCTGGAGTAGGGCTTCTGTGACTCCAGCAAACTGTACAAAGGT-----------------CTTT--------------------------------------------------------------------------------------TTTTTTTTAATGTATCTTCCGTGATACTTCAATTATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5969864 169 +   6154872 TATTTCCAAAGTAAAATTAAGTCACGTTTGTGGTTGCTAGTGAATGCGGCACAAATGGACCCTGAAGATTCGGGCATTGTTCTGCTCTGGAGTAGGGCTTCTGTGGCTCCAGCAAACTGTACAAAGGC------------------TTT--------------------------------------------------------------------------------------TTTTTTTTAATGTATCTTCCATGATACTTCAATTATTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74675329 171 + 122973662 TATTTCCAAAGTAAAATTAAGTCACATTGGTGGTTGCTAGTGAATGCGGCACAAATGGGCCCTGAAGATTCAGGCATCGTTCTGCTCTGGAGTAGGGCTTCTGTGGCTCCGGCAAACTGTACAAAGGC----------------TTTTT--------------------------------------------------------------------------------------TTTAAAAAAATATATCTTCTGTGATACTTCAATTATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30163458 244 + 172585720 GATTTCCAAAGTGAAATTAAGTCACGTTTGTGGCTGCTGGTGAACGCGGCACAAATGGACCC-----ATTCAGGCATCGTTCTGCTCTGGGGCGCGGCTTCTGTGGCTCCGGCAAACTATACAAAGGCTTTTTCctttctttctttctt------------------------tctttctttctttctttctttctttctttctttcttttttcttttttctttctttttctttctttTTTTTTGTGTATCTTCTGTGATACTTCAATTATTT
i rheMac8.chr4             C 0 I 328
s macFas5.chr4             29826918 246 - 170955103 GATTTCCAAAGTGAAATTAAGTCACGTTTGTGGCTGCTGGTGAACGCGGCACAAATGGACCC-----ATTCAGGCATCGTTCTGCTCTGGGGCGCGGCTTCTGTGGCTCCGGCAAACTATACAAAGGCTTTTTCctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttttttttt----------------------tttttttttGTGTATCTTCTGTGATACTTCAATTATTT
i macFas5.chr4             C 0 I 2
s macNem1.NW_012011356v1    2876240 204 -   2996164 GATTTCCAAAGTGAAATTCAGTCACGTTTGTGGCTGCTGGTGAACGCTGCACAAATGGACCC-----ATTCAGGCATCGTTCTGCTCTGGGGCGCGGCTTCTGTGGCTCCGGCAAACTATACAAAGGCtttttcctttctttctttctt------------------------------------------tttttttttttttttttttttt----------------------ttttttttAGTGTATCTTCTGTGATACTTCAATTATTT
i macNem1.NW_012011356v1   C 0 I 325
s chlSab2.chr17            29080260 212 -  71996105 GATTTCCAAAGTGAAATTAAGTCACGTTTGTGGCTGCTGGTGAATGCAGCACAAATGGACCCTGAAGATTCAGGCATCGTTCTGCTCTGGGGCGCGGCTTCTGTGGCTCCGGCAAACTACACAAAGGttttttcctttctttctttctt---------------------------------------ttcttttcttttttttttttttttt----------------------ttttttttAGTGTATCTTCTGTGATACTTCAATTATTT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2732932 183 -   3067355 TATTTCCAAAGTAAAATTAAGTCACGTTTGTGGCTGCTAGTGAATGCGGCACAAATGGACCCTGAAGATTCAGGCATCGTTCTGCTCTGGAGTACGGCTTCTGTGGCTCCAGCAAACTATACAAAGGCttt----tttctttctttctt--------------------------------------------------------------------------------------ttttttttAGTGTATCTTCTGTGATACTTCAATTATTT
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     316332 166 -   1771730 TATTTCAAAAGT-AAATTAAGTCACATTTGTGGCTGCTAGTGAATGCCACACAAATGGAT-CTGAAGATTCAAGCATCGTTCTGCTCTGGAGCAGTTCTTCTGTGGCTCCAGCAAACTATGCAAAGGC-------------------TT--------------------------------------------------------------------------------------TCTTCTTAAATGTGTCTTCTGTGATACTTCAATTATTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     389526 167 -    457564 TATTTCAAAAGT-AAATTAAGTCACATTTGTGGCTGCTAGTGAATGCCACACAAATGGATCCTGAAGATTCAAGCATCGTTCTGCTCTGGAGCAGTGCTTCTGTGACTCCAGCAAACTATGCAAAGCC-------------------TT--------------------------------------------------------------------------------------CCTTCTTAAATGTATCTTCTGTGATACTTCAATTATTT
i aotNan1.NW_018509740v1   C 0 C 0
e calJac3.chr4             30104189 1649 + 171630274 I
e manLeu1.NW_012101411v1      16695 610 +    119286 I
e cerAty1.NW_012002711v1     624412 690 +    766320 I

a score=50529.000000
s hg38.chr6_GL000254v2_alt   973364 13 +   4827813 CACCTTATTAATC
s panTro5.chr6             29936090 13 + 175400573 CACCCCATTAATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30169709 13 + 173848474 CACCCCATTAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5970033 13 +   6154872 CACCCCATTAATC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74675500 13 + 122973662 CACCCCATTAATC
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29827166 13 - 170955103 TACCCCATTAATC
i macFas5.chr4             I 2 I 310
s chlSab2.chr17            29080472 13 -  71996105 TACCCCATTAATC
i chlSab2.chr17            C 0 I 311
s colAng1.NW_012115566v1    2733115 13 -   3067355 TACCCCATTAATC
i colAng1.NW_012115566v1   C 0 I 308
s cebCap1.NW_016107755v1     316498 13 -   1771730 CACCCCATTAATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     389693 13 -    457564 CACCCCATTAATC
i aotNan1.NW_018509740v1   C 0 C 0
e calJac3.chr4             30104189 1649 + 171630274 I
e manLeu1.NW_012101411v1      16695 610 +    119286 I
e cerAty1.NW_012002711v1     624412 690 +    766320 I
e macNem1.NW_012011356v1    2876444 325 -   2996164 I
e rheMac8.chr4             30163702 328 + 172585720 I

a score=320764.000000
s hg38.chr6_GL000254v2_alt   973377 46 +   4827813 ATTTTCTTGCAAACAAAACTGAAAATATCAGTTCATAATGTGTTTC
s panTro5.chr6             29936103 46 + 175400573 ATTTTCTTGCAAACAAAACTGAAAATATCAGTTCATAATGTGTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30169722 46 + 173848474 ATTTTCTTGCAAACAAAACTGAAAATATCAGTTCATAATGTGTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5970046 46 +   6154872 ATTTTCTTGCAAACAAAACTGAAAATATCAGTTCATAATGTGTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74675513 46 + 122973662 ATTTTCTTGCAAACAAAACTGAAAATATCAGTTCATAATGTGTTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30164030 46 + 172585720 ATTTTCTTACAAACAAAACCGAAAATATCAGTTCATAATGTGTTTC
i rheMac8.chr4             I 328 C 0
s macFas5.chr4             29827489 46 - 170955103 ATTTTCTTGCAAACAAAACTGAAAATATCAGTTCATAATGTGTTTC
i macFas5.chr4             I 310 C 0
s macNem1.NW_012011356v1    2876769 46 -   2996164 ATTTTCTTGCAAACAAAACTGAAAATATCAGTTCATAATGTGTTTC
i macNem1.NW_012011356v1   I 325 C 0
s chlSab2.chr17            29080796 46 -  71996105 ATTTTCTTGCAAACAAAACTGAAAATATCAGTTCATAATGTGTTTC
i chlSab2.chr17            I 311 C 0
s manLeu1.NW_012101411v1      17305 46 +    119286 attttCTTGCAAACAAAACTGAAAATATCAGTTCATAATGTGTTTC
i manLeu1.NW_012101411v1   I 610 C 0
s colAng1.NW_012115566v1    2733436 46 -   3067355 ATTTTCTTGCAAACAAAACTGAAAATATCAGTTCATAATGTGTTTC
i colAng1.NW_012115566v1   I 308 C 0
s cebCap1.NW_016107755v1     316511 46 -   1771730 ATTTTCTTGCAAATAAAACTGAAAATGTTAGTTCACAATGTGtttc
i cebCap1.NW_016107755v1   C 0 I 1023
s aotNan1.NW_018509740v1     389706 46 -    457564 ATTTTCTTGCAAATAAAACTGAAAATGTTAGTTCACAATGTGTTTC
i aotNan1.NW_018509740v1   C 0 C 0
e calJac3.chr4             30104189 1649 + 171630274 I
e cerAty1.NW_012002711v1     624412 690 +    766320 I

a score=468876.000000
s hg38.chr6_GL000254v2_alt   973423 84 +   4827813 CATACAC----CTTGCCCTTATTCAAATGGTTATGAACAAGTGGTCTTCCATTTTCTATTGCCGCTGTAATTATTTGTTCCTGATCTG
s panTro5.chr6             29936149 84 + 175400573 CATATAC----CTTGCCCTTATTCAAATGGTTATGAACAAGTGGCCTTCCATTTTCTATTGCCGCTGTAATTATTTGTTCCTGATCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30169768 84 + 173848474 CATATAC----CTTGCCCTTATTCAAATGGTTATGAACAAGTGGCCTTCCATTTTCTATTGCCGCTGTAATTATTTGTTCCTGATCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5970092 84 +   6154872 CGTACAC----CTTGCCCTTATTCAAATGGTTGTGAACAAATGGCCTTCCATTTTCTATTGCCGCTGTAATTATTTGTTCCTGATCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74675559 83 + 122973662 C-TACAC----CTTGCCCTTATTTAAATGGTTATGAACAAGAGGCCTTCCATTTTCTATTGCCACTGTAATTATTTGTTCCTGATCCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30164076 84 + 172585720 CATATAC----TTTGCCCTTATTCAAATGGTTATGAACAAGTGGCCTTCCATTTTCTATTGCCACTGTAATTATTTGTTCCTGATCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29827535 84 - 170955103 CATATAC----TTTGCCCTTATTCAAATGGTTATGAACAAGTGGCCTTCCATTTTCTATTGCCACTGTAATTATTTGTTCCTGATCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2876815 84 -   2996164 CATATAC----TTTGCCCTTATTCAAATGGTTATGAACAAGTGGCCTTCCATTTTCTATTGCCACTGTAATTATTTGTTCCTGATCTG
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29080842 88 -  71996105 CATATACCTTGCTTGCCCTTATTCAAATGGTTATGAACAAGTGGCCTTCCATTTTCTATTGCCGCTGTAATTATTTGTTCCTGATCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      17351 84 +    119286 CATATAC----TTTGCCCTTATCCAAATGGTTATGAACAAGTGGCCTTCCATTTTCTATTGCTGCTGTAATTATTTGTTCCTGATCTG
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2733482 84 -   3067355 CATATAC----CTTGCCCTTATTCAAATGGTTATGAACAAGTGACCTTCCATTTTCTATTGCCACTGTAATTATTTGTTCCTGATCTG
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     389752 84 -    457564 TATACAC----CTTTGTCTTATTCGTGTGGTTATGAACAAGTGGCCTTCCATTTTCTATTGCCACTGTAATTATTTGTCCCTGGTCTG
i aotNan1.NW_018509740v1   C 0 I 6
e cebCap1.NW_016107755v1     316557 1023 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I
e cerAty1.NW_012002711v1     624412 690 +    766320 I

a score=83412.000000
s hg38.chr6_GL000254v2_alt   973507 18 +   4827813 GCAACACCTTCT-----TCAGCT
s panTro5.chr6             29936233 23 + 175400573 ACAACACCTTCTTCAGCTCAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30169852 23 + 173848474 ACAACACCTTCTTCAGCTCAGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5970176 18 +   6154872 ACAACACCTTCT-----TCAGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74675642 18 + 122973662 ACAACACCTTCT-----TCAGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30164160 18 + 172585720 ACAACACCTTCT-----TCAGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29827619 18 - 170955103 ACAACACCTTCT-----TCAGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2876899 18 -   2996164 ACAACACCTTCT-----TCAGCT
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29080930 18 -  71996105 ACAACACCTTCT-----TCAGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      17435 18 +    119286 ACAACACCTTCT-----TCAGCT
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2733566 18 -   3067355 ACAACACCTTCT-----TCAGCT
i colAng1.NW_012115566v1   C 0 C 0
e aotNan1.NW_018509740v1     389836  6 -    457564 I
e cebCap1.NW_016107755v1     316557 1023 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I
e cerAty1.NW_012002711v1     624412 690 +    766320 I

a score=144595.000000
s hg38.chr6_GL000254v2_alt   973525 24 +   4827813 CCTTTCTCTGGCCACCGAGATTAA
s panTro5.chr6             29936256 24 + 175400573 CCTTTCTCTGGCCACCGAGATTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30169875 24 + 173848474 CCTTTCTCTGGCCACCGAGATTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5970194 24 +   6154872 CCTTTCTCTGGCCACCGAGATTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74675660 24 + 122973662 CTTTTCTCTGTCCACCGAGATTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30164178 24 + 172585720 CCTTTCTCTGGCCACCGAGATTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29827637 24 - 170955103 CCTTTCTCTGGCCACCGAGATTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2876917 24 -   2996164 CCTTTCTCTGGCCACCGAGATTAA
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29080948 24 -  71996105 CCTTTCTCTGGCCACCGAGATTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      17453 24 +    119286 CCTTTCTCTGGCCACCGAGATTAA
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2733584 24 -   3067355 CCTTTCTCTGGCCACCGAGATTAA
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     389842 24 -    457564 CCTTTCTCTAGCCACCAAGATTAA
i aotNan1.NW_018509740v1   I 6 C 0
e cebCap1.NW_016107755v1     316557 1023 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I
e cerAty1.NW_012002711v1     624412 690 +    766320 I

a score=78993.000000
s hg38.chr6_GL000254v2_alt   973549 12 +   4827813 CAGTCCAACAAG
s panTro5.chr6             29936280 12 + 175400573 CAGTCCAACAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30169899 12 + 173848474 CAGTCCAACAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5970218 12 +   6154872 CAGTCCAACAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74675684 12 + 122973662 CAGTCCAACAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30164202 12 + 172585720 CAGTCCCACAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29827661 12 - 170955103 CAGTCCCACAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2876941 12 -   2996164 CAGTCCCACAAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     625102 12 +    766320 CAGTCCAACAAG
i cerAty1.NW_012002711v1   I 690 C 0
s chlSab2.chr17            29080972 12 -  71996105 GAGTCCAACAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      17477 12 +    119286 CAGTCCAACAAA
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2733608 12 -   3067355 CAGTCCAACAAG
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     389866 12 -    457564 CAGTCCAACAAG
i aotNan1.NW_018509740v1   C 0 I 302
e cebCap1.NW_016107755v1     316557 1023 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=5159.000000
s hg38.chr6_GL000254v2_alt   973561 1 +   4827813 C
s panTro5.chr6             29936292 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30169911 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5970230 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74675696 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30164214 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29827673 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2876953 1 -   2996164 C
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     625114 1 +    766320 C
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29080984 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      17489 1 +    119286 C
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2733620 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
e aotNan1.NW_018509740v1     389878 302 -    457564 I
e cebCap1.NW_016107755v1     316557 1023 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=1492760.000000
s hg38.chr6_GL000254v2_alt   973562 189 +   4827813 GGTCTTTTGATTCACTAAGTGGCTTAATAGGACAACGTTGATTTGAGCCAATACTTCTGGCATGTTCATTTCAATTTGTAAC------TTTTTTCTGAATTCATCCCCACA-----------------AGGTGAGCTGGAAAACTGCAACCATAACCAAAGCTAGAAAATACTGGAAGTAGCCAATATTTCTCTTCATCACCAAAGACTGGT
s panTro5.chr6             29936293 194 + 175400573 GGTCTTTTGATTCACTAAGTGGCTTAATAGGACAAGGTTGATTTGAGCCAATACTTCTGGCATGTTCATTTCAATTTGTAACTGAAG-TTTTTCCTGAATTCATCCCCACA-----------------AGGTGAGCTGGAAAACTGCAACCATAACCAAAGCTAGAAAATACTGGAAGTAGCCAATATTTCTCTTCATCACCAAAGACTGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30169912 194 + 173848474 GGTCTTTTGATTCACTAAGTGGCTTAATAGGACAAGGTTGATTTGAGCCAATACTTCTGGCATGTTCATTTCAATTTGTAACTGAAG-TTTTTCCTGAATTCATCCCCACA-----------------AGGTGAGCTGGAAAACTGCAACCATAACCAAAGCTAGAAAATACTGGAAGTAGCCAATATTTCTCTTCATCACCAAAGACTGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5970231 194 +   6154872 GGTCTTTTGATTCACTAAGTGGCTTAATAGGACAAGGTTGATTTGAGCCAATACTTCTGGCATCTTCATTTCAATTCGTAACTTAAG-TTTTTTCTGAATTCATCCCCACA-----------------AGGTGAGCTGGAAAACTGCAACCATAACCAAAGCTAGAAAATACTGGAAGTAGCCAATATTTCTCTTCATCACCAAAGACTGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74675697 194 + 122973662 GGTCTTTTGATTCACTAAGTGGCTTAATAGGACAAGGTTGATTTGAGCCAATACTTCTGGCATGTTCATTTTAATTTGTAACATAAT-TTTTTTCTGAATTCATCCCCACA-----------------AGGTGAGCTGGAAAACTGCAGCCATAATCAAAGCTAGAAAATACTGGAAGTAGCCAATATTTCTCTTCATCACCAAAGACTTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30164215 195 + 172585720 AGTCTTTTGATTCACTAAGTGGCTTAATAGGGCAAGGTTGATTTGAGCCAATACTTCTGGAATGTTCATTTCGATTTGTAACAGAAGTTTTTTTCTGAATTCATCCCCACA-----------------AGGTGAGCTGGAAAACTGCAACCATAACCAAAGCTAGAAAATACTGGAAGTAGCCAATATTTCTTTTCATCACCAAAGACTTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29827674 195 - 170955103 AGTCTTTTGATTCACTAAGTGGCTTAATAGGGCAAGGTTGATTTGAGCCAATACTTCTGGAATGTTCATTTCGATTTGTAACAGAAGTTTTTTTCTGAATTCATCCCCACA-----------------AGGTGAGCTGGAAAACTGCAACCATAACCAAAGCTAGAAAATACTGGAAGTAGCCAATATTTCTTTTCATCACCAAAGACTTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2876954 195 -   2996164 AGTCTTTTGATTCACTAAGTGGCTTAATAGAGCAAGGTTGATTTGAGCCAATACTTCTGGAATGTTCATTTCGATTTGTAACAGAAGTTTTTTTCTGAATTCATCCCCACA-----------------AGGTGAGCTGGAAAACTGCAACCATAACCAAAGCTAGAAAATACTGGAAGTAGCCAATATTTCTTTTCATCACCAAAGACTTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     625115 195 +    766320 AGTCTTTTGATTCACTAAGTGGCTTAATAGGGCAAGGTTGATTTGAGCCAATACTTCTGGAATGTTCATTTCGATTTGTAACGGAAGTTTTTTTCTGAATTCATCCCCACA-----------------AGGTGAGCTGGAAAACTGCAACCATAACCAAAGCTAGAAAATACTGGAAGTAGCCAATATTTCTTTTCATCACCAAAGACTTGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29080985 212 -  71996105 AGTCTTTTGATTCACTAAGTGGCTTAATAGGGCAAGGTTGATTTGAGCCAATACTTCTGGAATGTTCATTTCGATTTGTAACAGAAGTTTTTTTCTGAATTCATCCCCACAATTCTGAATTCATTTCCAGGTGAGCTGGAAAACTGCAACCATAACCAAAGCTAGAAAATATTGGAAGTAGCCAATATTTCTTTTCATCACCAAAGACTTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      17490 195 +    119286 AGTCTTTTGATTCACTAAGTGGCTTAATAGGGCAAGGTTGATTTGAGCCAATACTTCTGGAATGTTCATTTCGATTTGTAACAGAAGTTTTTTTCTGAATTCATCCCCACA-----------------AGGTGAGCTGGAAAACTGCAACCATAACCAAAGCTAGAAAATACTGGAAGTAGCCAATATTTCTTTTCATCACCAAAGACTTGT
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2733621 195 -   3067355 AGTCTTTTGATTCACTAAGTGGCTTAATAGGGCAAGGCTGATTTGAGCCAATACTTCTGGAATGTTCATTTCAATTTATAATAGAAGTTTTTTTCTGAATTCATCCCCACA-----------------AGGTGAGCTGGAAAACTGCAACCATAACCAAAGCTAGAAAATACTGGAAGTAGCCAATATTTCTTTTCATCACCAAAGACTTGT
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     317580 194 -   1771730 GGTCTTTTGATTCTCTAAGTGGCTTAATAGGACAAAGTTGATTTGAGCCAATATTTCTGGCATGTTCATTTTAATTTGTAACAGAAA-CTTTTTCTGAATCTATCCCCAGA-----------------AGGTGAGTTGGAAAACTGCAACCATAACCAAAGCTAGAAACTACTGGAAGTAGTCAGTGTTTCTCTTCATCACCAAAGACTTGT
i cebCap1.NW_016107755v1   I 1023 C 0
s aotNan1.NW_018509740v1     390180 194 -    457564 GGTCTTTTAATTCACTAAGCGGCTTAATAGGACAAAGTTGATTTGAGCCAGTACTTCTGGCATGTTCATTTTGATTTGTAACAGAAG-CTTTCTCTGAATCCATCCCCACA-----------------TGGTGAATTGGAAAACTGCAACCATAACCAAAGCTAGAAACTACTGGAAGTAGCCAATGTTTCTCTTCATCAACAAAGACTTGT
i aotNan1.NW_018509740v1   I 302 I 45
e calJac3.chr4             30104189 1649 + 171630274 I

a score=45558.000000
s hg38.chr6_GL000254v2_alt   973751 7 +   4827813 CTCTAAT
s panTro5.chr6             29936487 7 + 175400573 CTCTAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30170106 7 + 173848474 CTCTAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5970425 7 +   6154872 CTCTAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74675891 7 + 122973662 CTCCAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30164410 7 + 172585720 CTCCAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29827869 7 - 170955103 CTCCAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2877149 7 -   2996164 CTCCAAT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     625310 7 +    766320 CTCCAAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29081197 7 -  71996105 CTCCAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      17685 7 +    119286 CTCCAAT
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2733816 7 -   3067355 CTCCAAT
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     317774 7 -   1771730 CTCCAGT
i cebCap1.NW_016107755v1   C 0 C 0
e aotNan1.NW_018509740v1     390374 45 -    457564 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=4492589.000000
s hg38.chr6_GL000254v2_alt   973758 602 +   4827813 TTTTACTATTGTTCTA-TTTTTTCCAGCCAGCCAACAGTAGTAGCTGAAAAGCGAGAGCACACTGATGAAGAACACTGCGGGCACAAAGAAAAGGAAAAGTATGTGGAGCTTTGCTGTGTATCTCTCAGTTCATTCTACT-CACTAGAACGTGGCGTTCTCAGGAATTGACGTCCTCCAGGCCCCCAGATGAGGGTAGTGAGCACCCTGAGAGCCAGCTGGACTCCCCTCTTGGTGTGTTACTGCACAGCCACAGCCTCTGGGTAGGGAG--TTGTCCTGCACTTCTGGAATCATCTTT-TTGGTCATGGTGGCTACTGCTGTACTGTCCTTCtgaggtcagtgagataggatgttcacagcctcccttgaaaggaaacaagagacttgtcaggttgatggagagaacaagctgttcgacagtgcgcaaaccatatcctgggcttgtggttagaacatcctgcagcaaagaggtagaagagcc-aagggaggcatccccacatctgaggaagcccagaaacccatgaatagcgtccttgggctgacctatgctcattacaatagtagcaaacacaactctgagagggaagttaagatgctaatgagac
s panTro5.chr6             29936494 602 + 175400573 TTTTACTATTGTTCTA-TTTTTTCCAGCCAGCCAACAGTAGTAGCTGAAAAGCGAGAGCACACTGATGAAGAACACTGCAGGCACAAAGAAAAGGAAAAGTATGTGGAGCTTTGCTGTGTATCTCTCAGTTCATTCTACT-CACTAGAACGTGGCGTTCTCAGGAATTGATGTCCTCCAGGCCCCCAGATGAGGGTAGTGAGCACCCTGAGAGCCAGCTGGACTCCCCTCTTGGTGTGTAACTGCACAGCCACAGCCTCTGGGTAGGGAG--TTGTCCTGCACTTCTGGAATCATCTTT-TTGGTCATGGTGGCTACTGCTGTACTGTCCTTCtgaggtcggtgagatagggtgttcacagcctcccttgaaaggaaacaagagacttgtcaggttgatggagagaacaagctgttcgacggtgcgcaaaccatatcctgggcttgtggttagaacatcctgcagcaaagaggtagaagagcc-aagggaagcatccccacatctgaggaagcccagaaacccatgaatagcgtccttgggctgacctatgctcattacaatagtagcaaacacaactctgagcgggaagttaagatgctaatgagac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30170113 602 + 173848474 TTTTACTATTGTTCTA-TTTTTTCCAGCCAGCCAACAGTAGTAGCTGAAAAGCGAGAGCACACTGATGAAGAACACTGCAGGCACAAAGAAAAGGAAAAGTATGTGGAGCTTTGCTGTGTATCTCTCAGTTCATTCTACT-CACTAGAACGTGGCGTTCTCAGGAATTGATGTCCTCCAGGCCCCCAGATGAGGGTAGTGAGCACCCTGAGAGCCAGCTGGACTCCCCTCTTGGTGTGTAACTGCACAGCCACAGCCTCTGGGTAGGGAG--TTGTCCTGCACTTCTGGAATCATCTTT-TTGGTCATGGTGGCTACTGCTGTACTGTCCTTCtgaggtcggtgagatagggtgttcacagcctcccttgaaaggaaacaagagacttgtcaggttaatggagagaacaagctgttcgacggtgcgcaaaccatatcctgggcttgtggttagaacatcctgcagcaaagaggtagaagagcc-aagggaagcatccccacatctgaggaagcccagaaacccatgaatagcgtccttgggctgacctatgctcattacaatagtagcaaacacaactctgagcgggaagttaagatgctaatgagac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5970432 602 +   6154872 TTTTACTATTGTTCTA-TTTTTTCCAGCCAGCCAACAGTAGTAGCTGAAAAGCGAGAGCACACTGATGAAGAACACTGCAGGCACAAAGAAAAGGAAAAGTGTGTGGAGCTTTGCTGTGTATCTCTCAGTTCATTCTACT-CACTAGAACGTGGCGTTCTCAGGAATTGATGTCCTCCAGGCCCCCAGATGAGGGTACTGAGCACCCTGAGAGCCAGCTGGACTCCCCTCTTGGTGTGTAACTGCACAGCCACAGCCTCTGGGTAGGGAG--TTGTCCTGCACTTCTGGAATCATCTTT-TTGGTCATGGTGGCTACTGCTGTACTGTCCTTCtgaggtcggtgagatagggtgctcacagcctcccttgaaaggaaacaagagacttgtcaggttgatggagagaacaagctgttcgacggtgtgcaaaccatatcctgggcttgtggttagaacatcctgcagcaaagaggtagaagagcc-aagggaagcatccccacatctgaggaagcccagaaacccaagaatagcgtccttggtctgacctatgctcattacaatagtagcaaacacaactctgagcgggaagttaagatgctaatgagac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74675898 602 + 122973662 TTTTACTATTGTTCTA-TTTTTTCCAGCCAGCCAACAGTAGTAGCTGAAAAGCGAGAGGACACTGATGAAGAACACTGCAGGCACTAAGAAAA-GAAAAGTATGTGGAGCTTTGCTGTGTATCTGTCAGTTCATTCTACT-CACTAAAATGTGGCATTCTCAGGACTTGATGTCCTCCAGGCCCCTAGACGAGGGTAGCGAGCACCTTGGGAGCCAGCTGGACTCCCCTCTTGGTGTGTAACTGCACAGCCACAGCATCTGGGTGGGGAG--TTGTCCTGCACTTCTGGAATCATCTTTCTCGGTCATGGTGGCTACTGCTGTACTGCCCTTCtgaggtaggtgagataggttgttcacagtctcccttgaaaggaaaccagagacttgtcaggttgatggagagaacaagctgttcgacagtgcacaaaccatatcctgggcttgtggttagaacatcctgcagcaaagaggaagaagagcc-aagggaagcatccccaaatctgaggaagcacagaaacccatgattagcgtccttgggctgacctatgctcattataatagtagcaaacacacctctgagtgggaagttaagatgctaatgaaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30164417 604 + 172585720 TTTTACTATTGTTCTA-TTTTTTCCAGCCAGCCAATAGTAGTAGCTGAAAAGCGAGAGGACACTGATGAAGAACTTTGCAGGCCCAAAGAAAAGGAAAAGTATGTGGAGCTTTGCTGTGTATCTGTCAGTTCATCCTACTCCACTAGGACATGGCGTTCTCAAGACTTGATGTCCTCCAGGCCCCCAGCTGAGGGCAGCGAGCACCCTGAGAGCCAGCTGGACTTACCTCTTGGTGTGTAACTACACAGTCACCGCATCTGGGTGGGGAG--TTGTCCTGCACTTCTGGAATCATCTTCCTTGGTCATGGTGGCTACTGCTGTACTGTCCTTCtgaggtaggtgagatagggtattcacagcctcccttgaaaggaaacaagagacttgtcaggttgatggagagaacaagctgttcgacagtgcacaaaccatatcctgggcttgtggttagaacatcctacagcaaggaggtagaagaggc-aagggaaacatccccaaatctaagcaagcacagaaacccatgattagcatccttgggctgacctatgctcattatcatagtagaaaacatacgcctgagtgggaagtgaagatgctaatgagac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29827876 604 - 170955103 TTTTACTATTGTTCTA-TTTTTTCCAGCCAGCCAATAGTAGTAGCTGAAAAGCGAGAGGACACTGATGAAGAACTTTGCAGGCCCAAAGAAAAGGAAAAGTATGTGGAGCTTTGCTGTGTATCTGTCAGTTCATCCTACTCCACTAGGACATGGCGTTCTCAAGACTTGATGTCCTCCAGGCCCCCAGCTGAGGGCAGCGAGCACCCTGAGAGCCAGCTGGACTTACCTCTTGGTGTGTAACTACACAGTCACCGCATCTGGGTGGGGAG--TTGTCCTGCACTTCTGGAATCATCTTCCTTGGTCATGGTGGCTACTGCTGTACTGTCCTTCtgaggtcggtgagatagggtattcacagcctcccttgaaaggaaacaagagacttgtcaggttgatggagagaacaagctgttcgacagtgcacaaaccatatcctgggcttgtggttagaacatcctacagcaaggaggtagaagaggc-aagggaaacatccccaaatctaagcaagcacagaaacccatgattagcatccttgggctgacctatgctcattatcatagtagaaaacatacgcctgagtgggaagtgaagatgctaatgagac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2877156 601 -   2996164 TTTTACTATTGTTCTA-TTTTTTCCAGCCAGCCAATAGTAGTAGCTGAAAAGCGAGAGGACACTGATGAAGAACTTTGCAGGCCCAAAGAAAAGGAAAAGTATGTGGAGCTTTGCTGTGTATCTGTCAGTTCATCCTACTCCACTAGGACATGGCGTTCTCAAGACTTGATGTCCTCCAGG---CCAGCTGAGGGCAGCGAGCACCCTGAGAGCCAGCTGGACTTACCTCTTGGTGTGTAACTACACAGTCACCGCATCTGGGTGGGGAG--TTGTCCTGCACTTCTGGAATCATCTTCCTTGGTCATGGTGGCTACTGCTGTCCTGTCCTTCtgaggtaggtgagatagggtattcacagcctcccttgaaaggaaacaagagacttgtcaggttgatggagagaacaagctgttcgacagtgcacaaaccatatcctgggcttgtggttagaacatcctgcagcaaggaggtagaagaggc-aagagaaacatccccaaatctaagcaagcacagaaacccatgattagcatccttgggctgacctatgctcattatcatagtagaaaacatacgcctgagtgggaagcgaagatgctaatgagac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     625317 604 +    766320 TTTTACTATTGTTCTA-TTTTTTCCAGCCAGCCAACAGTAGTAGCTGAAAAGCGAGAGGACACTGATGAAGAACTTTGCAGGCCGAAAGAAAAGGAAAAGTATGTGGAGCTTTGCTGTGTATCTGTCAGTTTATTCTACTCCACTAGGACATGGCGTTCTCAAGACTTGATGTCCTCCAGGCCCCCAGCTGAGGGCAGCGAGCACCCTGAGAGCCAGCTGCACTTACCTCTTGGTGTGTAACTACACAGTCACTGCATCTGGGTGGGGAG--TTGTCCTGCACTTCTGGAATCATCTTCCTTGGTCATGGTGGCTACTGCTGTACTGTTCTTCtgaggtaggtgagatagggtattcacagcctcccttgaaaggaaacaagagacttgtcaggttgatggagagaacaagctgttggacagtgcacaaaccatatcctgggcttgtggttagaacatcctgcagcaaggaggtagaagaggc-aagggaaacatccccaaatctaagcaagcacagaaacccatgattagcatccttgggctgacctatgctcattatcatagtagaaaacatatgcctgagtgggaagtgaagatgctaatgagac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29081204 604 -  71996105 TTTTACTATTGTTTTA-TTTTTTCCAGTCAGCCAATAGTAGTAGCTGAAAAGCGAGAGGACACTGATGAAGAAATTTGCAGGTCCAAAGAAAAGGAAAAGTATGTGGAGCTTTGCTGTGTATCTGTCAGTTCATCCTACTCCACTAGGACATGGCGTTCTCAAGACTTGATGTCCTTCAGGCCCCCAGCTGAGGGCAGTGAGCACCCTGAGAGCCAGCTGGACTTACCTCTTGGTGTGTAACTACACAGTCACAGCATCTGGGTGGGGAG--TTGTCCTGCACTTCTGGAATCATCTTTCTTGGTCATGGTGGCTACTGCTATACTGTCCTTCtgaggtaggtgagatagggtgttcacagcctcccttgaaaggaaacaagagacttgtcaggttgatggagagaacaagctgttcgacagtgcacaaaccatatcctgggcttgtggttagaacatcctgcagcaaggaagtagaagaggc-aagggaaacatccccaaatctaagcaagcacagaaacccatgattagcatccttgggctgacctatgctcattatcatagtagaaaacatacgcctgagtgggaagttaagaggctaatgagac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      17692 604 +    119286 TTTTACTATTGTTCTA-TTTTTTCCAGCCAGCCAACAGTAGTAGCTGAAAAGCGAGAGGACACTGATGAAGAACTTTGCAGGCCCAAAGAAAAGGAAAAGTATGCGGAGCTTTGCTGTGTATCTGTCAGTTCATCCTACTCCACTAGGACATGGCGTTCTCAAGACTTGATGTCCTCCAGGCCCCCAGCTGAGGGCAGCGAGCACCCTGAGAGCCAGCTGCACTTACCTCTTGGTGTGTAACTACACAGTCACCGCATCTGGGTGGGGAG--TTGTCCTGCACTGCTGGAATCATCTTTCTTGGTCATGGTGGCTACTGCTGTACTGTTCTTCtgaggtaggtgagatagggtgtccacagactcccttaaaaggaaacaagagacttgtcaggttgatggagagaacaagctgttcgacagtgcacaaaccatatcctgggcttgtggttagaacatcctgcagtaaggaggtagaagaggc-aagggaaacatccccaaatctaagcaagcacagaaacccatgattagcatccttgggctgacctatgctcattatcatagtagaaaacatacgcctgagtgggaagtgaagatgctaatgagac
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2733823 605 -   3067355 TTTTACTATTGTTCTATTTTTTTCCAGCCAGCCAACAGGAGTAGCTGAAAAGCGAGAGGACACTGATGAAGAACTTTGCAGGCCCCCCAAAAAGGAAAAGTATGTGGAGCTTTGCTGTGTATCTGTCAGTTCATTCTACTCCAGTAGGACATGGCGTTCTCAAGACTTGATGTCCTGCAGGCCCCCAGCTGAGGGCAGCGAGCACCCTGAGAGCCAGCTGGACTTACCTCTTGGTGTGTAACTACACAGCCACAGCATCTGGGTGGGGAG--TTGTCCTGCACTTCTGGAATCATCTTTCTTGGTCATGGTGGCTACTGCTGTACTGTCCTTCtgaggtaggtgagatagggtgtccacagcctcccttgaaaggaaacaagagacttgtcaggttgatggagagaacaagctgttcgacagtgcacaaaccatatcctgggcttgtggttagaacatcctgcagcaaggaggtggaagagcc-aaggggaacatcccaaaatctaaacaagcgcagaaacccatgattagcgtccttgggctgacctatgctcattataatagtagaaaacatacccctgagtgggaagttaagatgctaaagagac
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     317781 605 -   1771730 TTTTACTATTGTTCTA-TTTTTTCCAGCCAGTCAACAGTAGTAGCTGAAAAGAGAGAGGACACTGACGAAGAACACGGCAGGCACAGAGAAAAGGAAAAGTATGTGGGGCTTTGCTGTGTATCTGTCAGTTCATTCTACTCCTCTAGAATGTGGCGTTCTCAGGACTTGATGTCCTCCAGGCCCCCAGATGAAGGTGGTGAGCACCCTGAGAGCCAGCTGGACTCACCTCTT-GTGTGTAACTGCACAGCCACAGCATCAGGGTGGGGGGGATTGTCCTGCACTTCTGGAATCATCTCTCTTGGTCATGGTAGCTACTGCTGCATTGTCCTTCtgaggtaggtgagatcgggtgttcacagcctcccttgaaaggaaacaagagacttgtcaggtcgatggagagaacaagctgttccacagtgcacacaccatgtcctaagcttgtggttagaacatcctgcagcaaggaggtggaagagcagaagggaaaagtctccaaatctgtgcaggcacagaaacccacaattagtgttcttgggctgatttatgctcattataatagtag-aaacagagccctgagtgggaagttaagatgctaatgagac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018509740v1     390419 605 -    457564 TTTTACTATTGTTCTA-TTTTTTCCAGCCAGTCAACAGTAGTAGCTGAAAAGAGAGAGGACACTGATGAAGAACACGGCAGGCACAGAGAAAAGGAAATGTACGCGGAGCTTTGCTGTGTATCCGTCAGTTCATTCTACTCCTCTAGAATGTGCCGTTCTCAGGACTTGATGTCCTCCAGACCCCCAGATGAAGGTAGTGAGCACCCTGAGAGCCAGCTGGACTCACCTCTT-GTGTGTAACTGCACAGCCACAGCATCTTGGGGGGGGGGGTTGTCCTGCACTTCTGGAATCATCTCTCTTGGTCATGGTGGCTACTGCTGCATTGTCCTTCtgaggtaggtgagatcaggtgttcacagcctcccttgaaaggaaacaagacacttgtcaggttgatggagggaacaagctgttccacagtgcacacaccatgtcctaagcttgtgattagaacgctgtgcagcaaggagctggaagagcagaagggaaaagtctccaaatctgttcaagcacagaaacccacaattagtgtccttgggctgatctatgctcattataatggtag-aaacgcagccccgagtgtgaagttaagatgctaataagac
i aotNan1.NW_018509740v1   I 45 I 421
e calJac3.chr4             30104189 1649 + 171630274 I

a score=711052.000000
s hg38.chr6_GL000254v2_alt   974360 113 +   4827813 gtaagatgtgtgtgctgatatgtacaaccatagtgcatgcacgttcaagagaccacagaacatgcttaaaacaataccccttcccacctattcatgaataatcatgtaagact
s panTro5.chr6             29937096 111 + 175400573 gtaag--gtgtgtgctgatatgtacaaccacagtgcatgcacgtccaagagaccacagaacatgcttaaaacaataccccttcccacctattcatgaataatcatgtaagact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30170715 111 + 173848474 gtaag--gtgtgtgctgatatgtacaaccacagtgcatgcacgtccaagagaccacagaacatgcttaaaacaataccccttcccacctattcatgaataatcatgtaagact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5971034 113 +   6154872 gtaagatgtgtgtgctgatatgtacaaccacagtgcatgcacatccaagagaccacagaacatgcttaaaacaataccccttcccacctattcatgaataatcatgtaagact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74676500 113 + 122973662 ataagatgtgtgtgctggtatgtacaaccacagtgcatgcacgtccaagagaccacagaatatgcttaaaacaataccccttcccacctattcatgaataatcatgtaagact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30165021 113 + 172585720 atgagatgtatgtgctggtatgtacaaccacagtgcacgcacgtccaagagagcacagaacatgcttaaaacaataccccttcccacctattcatgaataatcatgtaagact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29828480 113 - 170955103 atgagatgtatgtgctggtatgtacaaccacagtgcacgcacgtccaagagagcacagaacatgcttaaaacaataccccttcccacctattcatgaataatcatgtaagact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2877757 113 -   2996164 atgagatgtatgtgctggtatgtacaaccacagtgcacgcacatccaagagagcacagaacatgcttaaaacaataccccttcccacctattcatgaataatcatgtaagact
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     625921 113 +    766320 atgagatgtatgtgctggtatgtacaaccacagtgcacgcacgtccaagagagcacagaacatgcttaaaacaataccccttcccacctattcatgaataatcatgtaagact
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29081808 113 -  71996105 atgagatgtatgtgctggtatgtacaaccacagtgcacgcacgtccaagagagcacagaacatgcttaaaacaatacccgttcccacctattcatgaataatcatgtaagact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      18296 113 +    119286 atgagatgtatgtgctggtatgtacaaccacagtgcacgcacgtccaagagagcacagaacatgcttaaaacaataccccttcccacctattcatgaataatcatgtaagact
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2734428 113 -   3067355 atgagatgtatgtgcttgtatgtacaaccacagtgcacacacgtcgaagggaccacagaacatgcttaaaacaataccccttcccacctattcatgaataatcatgtaaggct
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     318386 107 -   1771730 atgagatgcacgttctagagtgtacaaccacagtgcgtgcacacccaggagaccacag-acatgcttaaaacaacaccccttcccatgtcttcatgaataaaccctcc-----
i cebCap1.NW_016107755v1   C 0 C 0
e aotNan1.NW_018509740v1     391024 421 -    457564 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=7328066.000000
s hg38.chr6_GL000254v2_alt   974473 979 +   4827813 cccgtgaggggagggtactgtctctcttttgagcag-ctgctctgatcagctgtcagagtgtactttcactttgcaataaattctcttgctgacttttactttggacttgctctcaaattcttttgtgtggcaaagtcaagaacctgaaccggcccattggctacatttccttccttttttctttctttctGTATCTTGTTGCTAGGGATAACTTTGCCCCTGCTGGCAGCATGCCC-------CTGAGGATGGCACCCTGTGGCTGGCGTCTTCCTTGGCTTGGCCTCGGGTCACTAAGCATAGCCCATGGTAGGAGGTTCTGAGAATGAGTGGCACTGCCTTGTGCAACAGTCCCCATGGGAGTGGCCCACAGGTGCTTGCATCTGTGGCATTTTCACAACTGTTTAAAAAGACTCAAGAATGTACTGTGGGAGGAGAGCAGGTCTGGAGACTCACCTGTGTCCCCCCACCTGCTCATCTGCATGGCCGTGTGCCTGACATGGTCAGAAATGAGAAATGCTGCTGCCCCTTTGCAAAGCACTACTTAGTTTTTCTCTTCTTGAAGGTGGTGGCACGATGCCCAGGTTGAGATGGACGCAGGAGTCAGCATCCTAAAGTAAAAGGAGAGACTTTAACAGAAATACCTGAGCTTTTCAATGAGAATGAACAGGGCCTTTTACCCTCTGGCAACTGTGTATTTCCCATTGACATGTTTCTTGTCCTCAGAATGGTTTTCCC-TTTTCGCAGGTGGTTTATTGAAAAA-GGAAAGGACAGAAAAGAAAAAGCAGGAGAAG---GTGTATGGGAAGCTGGGACCCTGGCCCTGTGCAGGGGAGATACAAGGTGCTTCTGGGGAGGCTGCCGCCATCTGGGGCACTGGCACA-TGGGGCATGGCAGGGCTCGCCTTCCTGATGATGCCGCCTATCCCAGTTGCCCACCGGAAGTTGCAGTGCCCAGATTAGTTTTGTATTGATGGAAA-TTTAAAAAA
s panTro5.chr6             29937207 978 + 175400573 cccgtgaggggagggtactgtctctcttttgagcag-ctgctctgatcagctgtcagagtgtactttcactttgcaataaattctcttgctgacttttactttggacttgctctcaaattcttttgtgtggcaaagtcaagaacctgaaccggcccattggctgcatttccttccttttttctttctttctGTATCTTATTGCTAGGGATATCTTTGTCCCTGTTGACAGCATGCCC-------CTGAGGATGGCACGCTGTGGCTGGCGTCGTCCTTGGCTTGGCCTCAGGTCACTAAGCATAGCCCATGGTAGGAGGTTCTGAGAATGAGTGGCACTGCCTTGTGCAACGGTCCCCATGGGAGTGGCCCACAGGTGCTTGCATCTGTGGCATTTTCACAACTGTTTAAAAAGACTCAAGAATGTACTGTGGGAGGAGAGCAGGTCTGGAGACTCACCTGTGT-CCCCCACCTGCTCATCTGCATGGCCGTGTGCCTGACATGGTCAGAAATGAGAAATGCTGCTGCCCCTTTGCAAAGCACTACTTAGTTTTTCTCTTCTTGAAGGTGGTGGCACGATGCCCAGGTTGAGATGGACGCAGGAGTCAGCATCCTAAAGTAAAAGGAGAGACTTTAACAGAAATACCTGAGCTTTTCAATGAGAATGAACAGGGCCTTTTACCCTCTGGCAACTGTGTATTTCCCATTGACATGTTTCTTGTTCTCAGAATGGTTTTTCC-TTTTTGCAGGTGGTTTATCAAAAAA-GGAAAGGACAGAAAAGAAAAAGCAGGAGAAG---GTGTATGGGGAGCTGGGACCCTGGCCCTGTGCAGGGGAGATACAAGGTGCTTCTGGGGAGGCTGCCACCATCTGGGGCACTGGCACA-TGGGGCATGGCAGGGCTCGCCTTCCTGATGATGCCGCCTATCCCAGTTGCCCACCGGAAGTTGCAGTGCCCAGATTAGTTTTGTATTGATGGAAA-TTTTAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30170826 978 + 173848474 cccgtgaggggagggtactgtctctcttttgagcag-ctgctctgatcagctgtcagagtgtactttcactttgcaataaattctcttgctgacttttactttggacttgctctcaaattcttttgtgtggcaaagtcaagaacctgaaccggcccattggctgcatttccttccttttttctttctttctGTATCTTATTGCTAGGGATATCTTTGCCCCTGTTGACAGCATGCCC-------CTGAGGATGGCACGCTGTGGCTGGCGTCGTCCTTGGCTTGGCCTCGGGTCACTAAGCATAGCCCATGGTAGGAGGTTCTGAGAATGAGTGGCACTGCCTTGTGCAACGGTCCCCATGGGAGTGGCCCACAGGTGCTTGCATCTGTGGCATTTTCACAACTGTTTAAAAAGACTCAAGAATGTACTGTGGGAGGAGAGCAGGTCTGGAGACTCACCTGTGT-CCCCCACCTGCTCATCTGCATGGCCGTGTGCCTGACATGGTCAGAAATGAGAAATGCTGCTG-CCCTTTGCAAAGCACTACTTAGTTTTTCTCTTCTTGAAGGTGGTGGCACGATGCCCAGGTTGAGATGGACGTAGGAGTCAGCATCCTAAAGTAAAAGGAGAGACTTTAACAGAAATACCTGAGCTTTTCAATGAGAATGAACAGGGCCTTTTACCCTCTGGCAACTGTGTATTTCCCATTGACATGTTTCTTGTCCTCAGAATGGTTTTTCC-TTTTTGCAGGTGGTTTATCAAAAAA-GGAAAGGACAGAAAAGAAAAAGCAGGAGAAG---GTGTATGGGGAGCTGGGACCCTGGCCCTGTGCAGGGGAGATACAAGGTGCTTCTGGGGAGGCTGCCACCATCTGGGGCACTGGCACA-TGGGGCATGGCAGGGCTCGCCTTCCTGATGATGCCGCCTATCCCAGTTGCCCACCGGAAGTTGCAGTGCCCAGATTAGTTTTGTATTGATGGAAATTTTTAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5971147 977 +   6154872 cccgtgaggggagggtactgtctctcttttgagcag-ctgctctcatcagctgtcagagtgtactttcactttgcaataaattctcttgctgacttttacttaggacttgctctcaaattattttgtgtggcaaagtcaagaacctgagctggcccattggctacatttccttccttttttctttctttctGTATCTTGTTGCTAGGGATAACTTTGCCCCTGCTGGCAGCATGCCC-------CTGAGGATGGCACCCTGTGGCTGGCGTCGTCCTTGGCTTGGCCTCGGGTCACTAAGCATAGCCCATGGTAGGAGGTTCTGAGAATGAGTGGCACTGCCTTGTGCAACGGTCCCCATGGGAGTGGCCCACAGGTGTTTGCATCTGTGGCATTTTCACAACTGTTTAAAAAGACTCAAGAATGTACTGTGGGAGGAGAGCAGGTCTGGAGACTCACCTGTGT-CCCCCACCTGCTCATCTGCATGGCCGTGTGCCTGACATGGTCAGAAATGAGAAATGCTGCTGCCCCTTTGCAAAGCACTACTTAGTTTTTCTCTTCTTGAAGGTGGTGGCACGATGCCCAGGTTGAGATGGACGCAGGAGTCAGCATCCTAAAGTAAAAGGAGAGACTTTAACAGAAATACCTGAGCTTTTCAATGAGAATGAACAGGGCCTTTTACCCTCTGGCAACTGTGTATTTCCCATTGACATGTTTCTTGTCCTCAGAATGGTTTTTCC-TTTTTGCAGGTGGTTTATCAAAAAA-GGAAAGGACAGAAAAGAAAAAGCAGGAGAAG---GTGTATGGGGAGCTGGGACCCTGGCCCTGTGCAGGGGAGATACAAGGTGCTTCTGGGGAGGCTGCCGCCATCTGGGGCACTGGCACA-TGGGGCACGGCAGGGCTCGCCTTCCTGATGATGCCGCCTATCCCAGTTGCCCACCGGAAGTTGCAGTGCCCAGATTAGTTTTGTATTGATGGAAA--TTAAAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74676613 977 + 122973662 ccagtgaggggagggtactgtctcacttttgaacag-ctgctctgatcagctgtcagagtgtactttcactttgcagtaaattctcttgctgacttttactttggacttgctctcaaattcttttgtgtggcaaagtcaagaacccgaaccagcccaTCCACTACACTTCCTTCCTTTTTTCTATCTTTCTGTACCTTTTTGCTAGGGATAACTTTGCCCCTGCTGGCAGCATGCCC-------CTGAGGATGGCACGCTGTGGCTGGCATCGTCCTTGGCTTGGCCTTGGGTCACTAAGCATAGCCCATGGTAGGAGGTTCTGAGAATGAGTGGCACTGCCTTGTGCGATGGTCCCCATGGAAGTGGCCCACAGGTGCTTGCATCTGTGGCATTTTCACAACTGTTTACAAAGACTCAAGAATGTACTGTGGGAGGAGAGCAGGTCTGGGGACTCACCTGTGT--CCCCACCTGCTCATCTGCATGGCCGTGTGCCTGACATGGTCAGAGATGAGAAATGCTGCTGCCCCTTTGCAAGGCACTACTTAGTTTTTCTCTTCTTGAAGGTGGTGGCTCGATGCCCAAGTTGAGATGGACGCAGGAGTCAGAATCCTAAAGTAAAAGGAGAGACTTTAACAGAAATACCTGAGCTTTTCAATGAGAATGAACAGGGCCTTTTACCCTCTGGCAGCTGTGTATTTCTCATTGAGATGTTTCTTGTCCTCAGAGCGGTTTCTCC-TTTTTGCAGGTGGCTTATCAAAAAA-GGAAAGGACAGAAAAGAAAAATCAGGAGAAG---GTGTATGGGGAGCTGGGACCCTGGCCCTGTGCAGGTGAGATACAAGGTGCTTCTGGGGAGGCTGCAGCCATCTGGGGCACTGGCACG-TGGGGCACGGCAGGGCCCGCCTTCCTGATGATGCTGCCTGTCCCAGTTGCCTGCCGGAAGTTGCAGTGCCCAGATTAGTTTTGTATTGATGGAAA-TTTAAAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30165134 980 + 172585720 cctgtgagggaagggtactgtctcacttttgagcagcctgctctgatcagctgtcagagtatactttcactttgcaataaattctcctgctgacttttactttggacttgctctcaaattcttttgtgtggc-aagtccagagcacgcaccggcccatcggctacaTATCCTACCTTTTTGCTTTCTTTCTGTATCTTGTTGCTAGGGATAACTTTGCCCCTGCTGGCAGCATGCCC-------CTGAGGATGGTGTGCTGTGGCAGGTGTCCTCCTCGGCTTGGCCTTAGGTCACTAAGCATAGCCCATGGTAGGAGGTTCTGAGAATGAGTGGAACTGCCTCATGCAATGGTCCCCATGGGAGTGGCCCACAGTTGCTTGCATCTGTGGCATTTTCACAACTGTTTAAAAAGACTCAAGAATGTACTGTGGGAGGAGAGCAGGTCTGGGGCCTCATCTGTGT-CCCCCACCTGCTCATCTGCATGGCCGTGCGCTTGATGTGGTCAGAAGTGAGAAATGCTGCTGCCCCTTTGCAAAGCACTACTTAGTTTTTCTCTTCTTAAGGGTGGTGGCACGATGCCCAGGTTGAGATGGACGCAGGAGTCGGCATCCTAAA-TAAAAGGAGAGACTTTAATAGAAATACCTGAGCTTTTCAATGCGCACGAACAGGGCCTTTTACCCTCTGGCAACCATGTGTTTCTCATTGAGATGTTTCTTGTCCTCAGAGTGATTTTTCC-TTTTTGCAGGTGGTTTATCAAAACA-GGAAAGGACAAAAAAGAAAAAGCAGGAGAAGAAAAAGTATGGGGAGCTGGGACCCTGGCCCTGTGCAGGTGACATACAAAATGCTTCTGGGGAGGCTGCCGCCATCTGGGGCACTGGCACA-TGGGGCACGGCAGGGCCCGCCTTCCTGATGATGCCGCCTGTCCCAGTTGCTCGCCGGAAGTTGCAGTGCCCAGATCAGTTTTGTATTGATGGGAA-TTTTAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29828593 981 - 170955103 cctgtgagggaagggtactgtctcacttttgagcagcctgctctgatcagctgtcagagtatactttcactttgcaataaattctcctgctgacttttactttggacttgctctcaaattcttttgtgtggc-aagtccagagcacgcaccggtccatcggctacaTATCCTACCTTTTTTCTTTCTTTCTGTATCTTGTTGCTAGGGATAACTTTGCCCTTGCTGGCAGCATGCCC-------CTGAGGATGGTGTGCTGTGGCAGGTGTCCTCCTCGGCTTGGCCTTAGGTCACTAAGCATAGCCCATGGTAGGAGGTTCTGAGAATGAGTGGAACTGCCTCATGCAATGGTCCCCATGGGAGTGGCCCACAGTTGCTTGCATCTGTGGCATTTTCACAACTGTTTAAAAAGACTCAAGAATGTACTGTGGGAGGAGAGCAGGTCTGGGGCCTCACCTGTGT-CCCCGACCTGCTCATCTGCATGGCCGTGCGCTTGATGTGGTCAGAAGTGAGAAATGCTGCTGCCCCTTTGCAAAGCATTACTTAGTTTTTCTCTTCTTAAGAGTGGTGGCACGATGCCCAGGTTGAGATGGACGCAGGAGTCGGCATCCTAAAGTAAAAGGAGAGACTTTAATAGAAATACCTGAGCTTTTCAATGCGCACGAACAGGGCCTTTTACCCTCTGGCAACCATGTGTTTCTCATTGAGATGTTTCTTGTCCTCAGAGTGATTTTTCC-TTTTTGCAGGTGGTTTATCAAAACA-GGAAAGGACAAAAAAGAAAAAGCAGGAGAAGAAAAAGTATGGGGAGCTGGGACCCTGGCCCTGAGCAGGTGACATACAAAATGCTTCTGGGGAGGCTGCCGCCATCTGGGGCACTGGCACA-TGGGGCACGGCAGGGCCCGCCTTCCTGATGATGCCGCCTGTCCCAGTTGCTCGCCGGAAGTTGCAGTGCCCAGATCAGTTTTGTATTGATGGGAA-TTTAAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2877870 981 -   2996164 cctgtgagggaagggtactgtctcacttttgagcagcctgctctgatcagctgtcagagtatactttcactttgcaataaattctcctgctgacttttactttggacttgctctcaaattcttttgtgtggc-aagtccagagcacgcaccggcccatcggctacaTATCCTACCTTTTTTCTTTCTTTCTGTATCTTGTTGCTAGGGATAACTTTGCCCCTGCTGGCAGCATGCCC-------CTGAGGATGCTGTGCTGTGGCAGGTGTCCTCCTCGGCTTGGCCTTAGGTCACTAAGCATAGCCCATGGTAGGAGGTTCTGAGAATGAGTGGAACTGCCTCATGCAATGGTCCCCATGGGAGTGGCCCACAGTTGCTTGCATCTGTGGCATTTTCACAACTGTTTAAAAAGACTCAAGAATGTACTGTGGGAGGAGAGCAGGTCTGGGGCCTCACCTGTGT-CCCCCACCTGCTCATCTGCATGGCCGTGTGCTTGATGTGGTCAGAAGTGAGAAATGCTGCTGCCCCTTTGCAAAGCACTACTTAGTTTTTCTCTTCTTAAGGGTGGTGGCACGATGCCCAGGTTGAGATGGACGCAGGAGTCGGCATCCTAAAGTAAAAGGAGAGACTTTAATAGAAATACCTGAGCTTTTCAATGCGCATGAACAGGGCCTTTTACCCTCTGGCAACCATGTGTTTCTCATTGAGATGTTTCTTGTCCTCAGAGTGATTTTTCC-TTTTTGCAGGTGGTTTATCAAAACA-GGAAAGGACAAAAAAGAAAAAGCAGGAGAAGAAAAAGTATGGGGAGCTGGGACCCTGGCCCTGAGCAGGTGACATACAAAATGCTTCTGGGGAGGCTGCCGCCATCTGGGGCACTGGCACA-TGGGGCACGGCAGGGCCCGCCTTCCTGATGATGCCGCCTGTCCCAGTTGCTCGCCGGAAGTTGCAGTGCCCAGATCAGTTTTGTATTGATGGGAA-TTTTAAAAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     626034 978 +    766320 cctgtgagagaagggtactgtctcacttttgagcagcctgctctgatcagctgtcagagtatactttcactttgcaataaattctcctgctgacttttactttggacttgctctcaaattcttttgtgtggc-aagtcaagagcacgcaccggcccatcggctacaTATCCTACCTTTTTTCTTCCTTTCTGTATCTTGTTGCTAGGGATAACTTTGCCCCTGCTGGCAGCATGCCC-------CTGAGGATGGTGTGCTGTGGCAGGTGTCCTCCTCGGCTTGGCCTTAGGTCACTAAGCATAGCCCATGGTAGGAGGTTCTGAGAATGAGTGGAACTGCCTCATGCAATGGTCCCCATGGGAGTGGCCCACAGGTGCTTGCATCTGTGGCATTTTCACCACTGTTTAAAAAGACTCAAGAATGTACTGTGGGAGGAGAGCAGGTCTGGGGCCTCACCTGTGT-CCCCCACCTGCTCATCTGCATGGCCGTGTGCTTGATGTGGTCAGAAGTGAGAAATGCTGCTGCCCCTTTGCAAAGCACTACTTAGTTTTTCTCTTCTTAAAGGTGGTGGCACGATGCCCAGGTTGAGATGGACGCAGGAGTCGGCATCCTAAAGTAAAAGGAGAGAGTTTAATAGAAATACCTGAGCTTTTCAATGCGCATGAACAGGGCCTTTTACCCTCTGGCAACCATGTGTTTCTCATTGAGATCTTTCTTGTCCTCAGAGTGATTTTTCC-TTTTTGCAGGTGGTTTATCAAAACA-GGAAAGGACAAAAAAGAAAAAGCAGGAGAAG---GTGTATGGGGAGCTGGGCCCCTGGCCCTGTGCAGGTGACATACAAGATGCTTCTGGGGAGGCTGTTGCCATCTGGGGCACTGGCACA-TGGGGCACGGCAGGGCCCACCTTCCTGATGATGCCGCCTGTCCCAGTTGCTCGCCGGAAGTTGCAGTGCCCAGATTAGTTTTGTATTGATGGGAA-TTAAAAAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29081921 978 -  71996105 cctgtgagaggagggtactgtctcacttttaagcagcctgctctgatcagctgtcagagtgtactttcactttgcaataaattatcttgctgacttttacttcggacttactctcaaattcttttgtgtggc-aagtcaagagcacgaactggcccatcagctacaCATCCTTCCTTTTTTCTTTCTTTCTGTATCTTGTTGCTACGGATAACTTTGCCCCTGCTGGTAGCATGCCC-------CTGAGGATGGTGTGCTGTGGCAGGTGTCCTCCTCGGCTTGGCCTTAGGTCACTAAGCATAGCCCATGGTAGGAGGTTCTGAGAATAAGTGGAACTGCCTCATGCAAGGGTCCCCATGGGAGTGGCCCACAGGTGCTTGCATCTGTGGCATTTTCACAACTATTTAAAAAGACTCAAGAATGTACTGTGGGAGGAGAGCAGGTCTGGGGCCTCACCTGTGT-CCCCCACCTGCTCATCTGCATGGCCGTGCGCCTGATGTGGTCAGAAGTGAGAAATGCTGCTGCCCCTTTGCAAAGCTCTACTTAGTTTTTCTTTTCTTAAAGGTGGTGGCATGATGCCCAGGTTGAGATGGACGCAGGAGTCAGCATCCTAAAGTAAAAGGAGAGACTTTAATAGAAATACCTGAACTTTTCAATGTGCATGAACAGGGCCTTTTACCCTCTGGCAACCGTGTGTTTCTCACTGAGATGTTTCTTGTCCTCAGAGTGGTTTTTCC-TTTTTGCAGGTGGTTTATCAAAACA-GGAAAGGACAAAAAAGAAAAAGCAGGAGAAG---GTGTATGGGGAGCTGGGACCCTGGCCCTGTGCAGGTGACATACAAGATGCTTCTGGGGAGGCTGCCGCCATCTGGGGCACTGGCACA-TGGGGCACGGCAGGACCTGCCTTCCTGATGATGCCGCCTGTCCCAGTTGCTTGCCGGAAGTTGCAGTGCCCAGATTAGTTTTGTATTGATGGGAA-TTTTAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      18409 978 +    119286 cctgtgagggaagggtactgtctcacttttgagcagtctgctctgatcagctgtcagagtatactttcactttgcaataaattctcctgctgacttttactttggacttgctctcaaattcttttgtgtggc-aagtcaagagcacgcaccggcccatcggctacaTATCCTACCTTTTTTCTTTCTTTCTGTATCTTGTTGGTAGGGATAACTTTGCCCCTGCTGGCAGCATGCCC-------CTGAGGATGGTGTGCTGTGGCAGGTGTCCTCCTCGGCTTGGCCTTAGGTCACTAAGCATAGCCCATGGTAGGAGGTTCTGAGAATGAGTGGAACTGCCTCATGCAATGGTCCCCATGGGAGTGGCCCACAGTTGCTTGCATCTGTGGCATTTTCACAACTGTTTAAAAAGACTCAAGAATGTACTGTGGGAGGAGAGCAGGTCTGGGGCCTCACCTGTGT-CCCCCACCTGCTCATCTGCATGGCCGTGCGCCTGATGTGGTCAGAAGTGAGAAATGCTGCTGCCCCTTTGCAAAGCACTACTTAGTTTTTCTCTTCTTAAAGGTGGTGGCATGATGCCCAGGTTGAGATGGACGCAGGAGTCGGCATCCTAAAGTAAAAGGAGAGAGTTTAATAGAAATACCTGAGCTTTTCAATGCGCATGAACAGGGCCTTTTACCCTCTGGCAACCATGTGTTTCTCACTGAGATGTTTCTTGTCCTCAGAGTGATTTTTCC-TTTTTGCAGGTGGTTTATCAAAACA-GAAAAGGACAAAAAAGAAAAAGCAGGAGAAG---GTGTATGGGGAGCTGGGACCCTGGCCCTGTGCAGGTGACATACAAGATGCTTCTGGGGAGGCTGCTGCCATCTGGGGCACTGGCACA-TGGGGCACGGCAGGGCCCGCCTTCCTGATGATGCCGCCTGTCCCAGTTGCTCGCCGGAAGTTGCAGTGCCCAGATTAGTTTTGTATTGATGGGAA-TTTTACAAA
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2734541 978 -   3067355 cccgtgaggggagggtactgtctcacttttgagcagcctgctctgatcagctgtcagagtgtactttcactttgcaatatattatcttgctgacttttactttggacttgctctcaaattcttttgtgtggc-aagtcaagagcacgaaccggcccatcggctacaCATCCTTCCTTTTTTCTTTCTTTCTGTATCTTGTTGCTAGGGATAACTTTGCCCCTGCTGGCAGCATGCCC-------CTGAGGATGGTGTGCTGTGGCAGGTGTCCTCCTCGGCTTGGCCTTAGGTCACTAAGCATAGCCCATGGTAGGAGGTTCTGAGAATGAGTGGAACTGCCTCATGCAATGGTCCCCATGGGAGTGGCCCACAGGTTGTTGCATCTGTGGCATTTTCACAACTGTTTAAAAAGACTCAAGAATGTACTGTGGGAGGAGAGCAGGTCTGGGGCCTCACCTGTGT-CCACCACCTGCTCATCTGCATGGCCATGCACCTGATGTGGTAAGAAGTGAGAAATGCTGCTGCCCCTTTGCAAAGCACTACTTAGTTTTTCTCTTCTTAAAGGTGGTGGCACGATGCCCAGGTTGAGATGGACGCAGGAGTCGGCATCCTAAAGTAAAAGGAGAGACTTTAATAGAAATAACTGAGCTTTTCAATGTGCATGAACAGGGCCTTTTACCCTCTGGCAACCATGTGTTTCTCATGGAGATGTTTCTTGTCCTCAGAGTGGTTTTTCC-TTTTTGCAGGTGGTTTATCAAAACA-GGAAAGGACAAAAAAGAAAAAGCAGGAGAAG---GTATACGGGGAGCTGGGACCCTGGCCCTGTGCAGGTGACATACAAGATGCTTCTGGGGAGGCTGCCGCCATCTGGGGCACTGGCACA-TGGCACGCGGCAGGGCCTGCCTTCCTGATGATGCCGCCAGTCCCAGTTGCTCGCCGGAAGTTGCAGTGCCCCGATTAGTTTTGTATTGATGGGAA-TTTTAAAAA
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     318493 978 -   1771730 cccatgaggggagggtactgtctcacttttgagcagcctgctgtgatcagctgtcagagtgtgctttcactttgcaatc-attctcttgcttacttttactttggacttgctctcaaattgttttgtgtggcaaagtcaagaacccaaaccggtccaccggctacacttccttcccttttccttcctttctGTATTTTGTTGCTATGGATAACTTGGCCCCTGCCGGCAGTGTGCCCCTAGGAACTGAGGATGGCGCACTGTGGCTGGCGTCCTCCTCAGCTTGGCCTTGGGTCACTAAGTGCAGCC-ATGGTAAGAGGTTCTGGGAATGAGTGGCACTGCCTTGTGCAATGGTCCCCATGGGGGTGGCACACAGGTGCTAGTATCTGTGGCATTTTCACAACTGTTTAAAAATACTCAAGAATGTACA----GAGGAGAGCAGTTCTGGGGCCTGACCTGTGT-CCCCCACCTGCTCATCTGCATGGCCGTGCGCCTGACGCAGTCAGAAATGAAAAATGCCGCTGCCCCTTTGCAAAGCACTACTTAGATTTCCTCTTCTTGAAGGTGGTGGCACGATGCCCAGGTTGAGATGGACGCAGGAGTCAGCATTCCAAAGTAAAAGGAGAGACTTTGGCAGAAATACCCGAGCTTCTCAATGTGAATGAACA-GGCCTTCTAACCTTTGGCAACCGTGGATTTCTCATTGAGATGTTT-TTGTGCTCAGAGTGGTTTTTCCTTTTTTGCAGGTGGTTTATTGAAAAATAGAAAGGACAGAAAAGGAAAAGCAGGAGAAG---GTGTGTGGGGAGCTGGGACCCTGGGCCTGTGCAGATGAGGCTCAAGGTGCTTCTGGCAAGGCTGCCACCATCCAGGGCACTGGCACATTGAGGCACAGCACGGCCTGCCTTCCTGATGATGCCGTCTGTCCCAGTTGCTCACTGGAAGTTGCAGTGCCCAG---AGTTTTGTATTGATGGAAA-TTAAAAAAa
i cebCap1.NW_016107755v1   C 0 I 364
s aotNan1.NW_018509740v1     391445 980 -    457564 cccatgaggggagggtactgtctcatttttgagcagcctgctctgatcagctgtcagagtgtactttcactttgcaata-attctcttgattacttttactttggacttgctctcaagttgttttgtgtggcaaagtcaagaacccaaaccggtccactggctacaCTTCCTTCCCTTTTCCTTTCTTTCTGTATCTTATTGCTACGGATAACTTTGCCCCTGCTGGCAGCATGCCCCTAAGAACTGAGGATGGTGCGCTGTGGCTGGCGTTCTCCTTGGTTTGGTCTTGGGTCACTAAGTGCAGTCGATGGTAGGAAGTTCTGGGAATGAGTGGCACTGCCTTGTGCAATGGTCCCCATGGGAGTGGCCCACAGGTGCTAGTATCTGTGGCATTTTCACAACTGTTTAAAAAGACTCAAGAATGTACT----GAGGAGAGCAGTTCTGGGACCTCACCTCTGT-CCCCCACATGCTCATCTGCATGGCCATGCGCCTGACGCAGTCAGAAATGAAAAATACCACTGCCCCTTTGCAAAGCACTACTTAGATTTTCTCTTCTTGAAAGTGGTGGCACGATGCCCAGGTTGAGATGGACACAGGAGGCAGCATTCCAAAGTAAAAGGAGAGACTTTAGCAGAAATACCTGATCTTTTCAATGTGAATGAACAGGGCCTTTCACCCTTTGACAACCATGTATTTCTCATTGAGATGCTT-TTGTGCTCAGAGTGATTTTTACTTTTTTGCAGGCGGTTTACTGAAAAATAGAAAGGACAGAAAAGGAAAAGCAGGAGAAG---GTGTATGGGGATCTGAGACCCTGGGCCTGTGCAGATGAGGTACAAGGTGCTTCTGGAAAGGCTGTCACCATCCAGGGCACTGGCACATTGGGGCACAGCATGGCCTGCCTTCCTGATAATGCCATCTGTCCCAGTTGCTCACTGGAAGTTGCAGTGCCCAG---AGTTTTGTATTGATGGAAA-TTAAAAAAA
i aotNan1.NW_018509740v1   I 421 C 0
e calJac3.chr4             30104189 1649 + 171630274 I

a score=7098.000000
s hg38.chr6_GL000254v2_alt   975452 1 +   4827813 A
s panTro5.chr6             29938185 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30171804 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5972124 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74677590 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30166114 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29829574 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2878851 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     627012 1 +    766320 A
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29082899 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      19387 1 +    119286 A
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2735519 1 -   3067355 A
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018509740v1     392425 1 -    457564 A
i aotNan1.NW_018509740v1   C 0 I 352
e cebCap1.NW_016107755v1     319471 364 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=35038.000000
s hg38.chr6_GL000254v2_alt   975453  8 +   4827813 AT--TATATT
s panTro5.chr6             29938186  8 + 175400573 AT--TATATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30171805  8 + 173848474 AT--TATATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5972125  8 +   6154872 AT--TATATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74677591  8 + 122973662 AT--TATATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30166115 10 + 172585720 ATATTATATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29829575 10 - 170955103 ATATTATATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2878852 10 -   2996164 ATATTATATT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     627013 10 +    766320 ATATTATATT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29082900 10 -  71996105 ATATTATATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      19388 10 +    119286 ATATTATATT
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2735520 10 -   3067355 ATACTATATT
i colAng1.NW_012115566v1   C 0 C 0
e aotNan1.NW_018509740v1     392426 352 -    457564 I
e cebCap1.NW_016107755v1     319471 364 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=4347205.000000
s hg38.chr6_GL000254v2_alt   975461 585 +   4827813 ACATAATTTTATGCTTTTTGAAAATAGCTAATAAACTTTTATGGCTAAGTTGTTAGTAATGGTAATCTCTCTAATCTGCTTAAAGACGGTCAAATCTGCAGGGTTCCCATCTCCACTGGACACCTGTGCTT-CCTGTGGGGTCTATTTTCCGGTGGCTTTCCCTGTTGGTTGCCCCTGTGACTGCTGACATCCTGCCTTCTGGTGGAAACCACACTCTTCCTTGCCCAGTGAGGGTTGGAAAATTGGATGACTAAACTCGACGAAGATAGCAAATAACATTTGTTCTGCGTGGGTGCCATCATCACCTGCACTTGAAAGCAAGGCTGAGGTGCAGAAGACACAAAATGTGGCCATGTCCCTTGGCTGGCAAGTGGCCTAGGGGCAATGTGAGCCTGAGTGTATGACACTGTGACACAGGACAGGGTGCGTCACAGTGTTGCCCATTGTGACTGCAGGGCCAAAAGGAACCAGGGCTGAGAGGAACCTGGAGACATGCTGGGGTGGGGCCAAACGAGGGCTTGGAGAGAGCCTCCACCCACCCTCACAGGGCCTGGTGGAGACAGAC-CGAGGAGGGGC-ACCTGCCCC
s panTro5.chr6             29938194 585 + 175400573 ACATAATTTTATGCTTTTTGAAAATAGCTAATAAACTTTTATGGCTAAGTTGTTAGTAATGGTAATCTCTCTAATGTGCTTAAAGACGGTCAAATCTGCAGGGTTCCCATCTCCACTGGACACCTGTGCTT-CCTGCAGGGTCTATTTTCCAGTGGCTTTGCCTGTTGGTTGCCCCTGTGACTGCTGACATCCTGCCTTCTGGTGGAAACCACATTCTTCCTTGCCCATTGAGGGTTGGAAAATTGGATGACTAAACTCGATGAAGATAGCAAATCACATTTGTTCTGCATGGGTGCCATCATCACCTGCACTTGAAAGCAAGGCTGAGGTGCAGAAGGCACAAAATGTGGCCATGTCCCTTGGCTGGCAAGTGGCCTAGGGGCAATGTGAGCCTGAGTGTATGACACTGTGACACAGGACAGGGTGTGTCACAGTGTTGCCCATTGTGACTGCAGGGCCAAAAGGAACCAGGGCTGAGAGGAACCTGGAGACATGCTGGGGTGGGGCCAAACGAGGGCTTGGAGAGAGCCTCCACCCACCCTCACAGGGCCTGGTGGAGACAGAC-TGAAGAGGGGC-ACCTGCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30171813 585 + 173848474 ACATAATTTTATGCTTTTTGAAAATAGCTAATAAACTTTTATGGCTAAGTTGTTAGTAATGGTAATCTCTCTAATGTGCTTAAAGACGGTCAAATCTGCAGGGTTCCCATCTCCACTGGACACCTGTGCTT-CCTGCAGGGTCTATTTTCCAGTGGCTTTGCCTGTTGGTTGCCCCTGTGACTGCTGACATCCTGCCTTCTGGTGGAAACCACACTCTTCCTTGCCCATTGAGGGTTGGAAAATTGGATGACTAAACTCGATGAAGATAGCAAATCACATTTGTTCTGCATGGGTGCCATCATCACCTGCACTTGAAAGCAAGGCTGAGGTGCAGAAGGCACAAAATGTGGCCATGTCCCTTGGCTGGCAAGTGGCCTAGGGGCAATGTGAGCCTGAGTGTATGACACTGTGACACAGGACAGGGTGTGTCACAGTGTTGCCCATTGTGACTGCAGGGCCAAAAGGAACCAGGGCTGAGAGGAACCTGGAGACATGCTGGGGTGGGGCCAAACGAGGGCTTGGAGAGAGCCTCCACCCACCCTCACAGGGCCTGGTGGAGACAGAC-CGAGGAGGGGC-ACCTGCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5972133 585 +   6154872 ACATAATTTTATGCTTTTTGAAAATAGCTAATAAACTTTTATGGCTAAGTTGTTAGTAATGGTAATCTTTCTAATGTGCTTAAAGACGGTCAAATCTGCAGGGCTCCCATCTCCACTGGACACCTGTGCTT-CCTGCGGGGTCTATTTTCCAGTGGCTTTGCCTGTTGGTTGCCCCTGTGACTGCTGACATCCTGCCTTCTGGTGAAAACCACACTCTTACTTGCCCATTGAGGGTTGGAAAATTGGATGACTAAACTCGATGAAGATAGCAAATAACATTTGTTCTGCATGGGTGCCATCATCACCTGCACTTGAAAGCAAGGCTGAGGTACAGAAGGCACAAAATGTGGCCATGTCCCTCGGCTGGCAAGTGGCCTAGGGGCAATGTGAGCCTGAGTGTATGACACTGTGACACAGGACAGGGTGTGTCACAGTGTTGCCCATTGTGACTGCAGGGCCAAAAGGAACCAGGGCTAAGAGGAACCTGGAGACATGCTGGGGTGGGGCCAAACGAGGGCTTGGAGAGAGCCTCCACCCACCCTCACAGGGCCTGGTGGAGACAGAC-CAAGGAGGGGC-ACCTGCCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74677599 586 + 122973662 ACATAATCTTATGCTTTTTGAAAATAGCTAATAAACTTTTGTGGCTAAGTTGTTAGTAATGGTAATCTCTCTAATGTGCTTAAAGATAGTCAAATCTGCAGGGTTCCCATCTCCACTGGACACCTGTGCTT-CCTGCGGGGTCTATTTTCTGGTGGCTTTGCCTGTTGGTTGCCCCTGTGACTGCTGACATCCTGCCTTCTGGTGGAAACCACACTCTTCCTTGCCCATTGAGGGTTGGAAAATTGGATGACTAAACTCGATGAAGATAGCAGACAACATTTGTTCTGCATGGGTGCCATCATCACCTGCACTTGAAAGCAAGGCTGAGGTGCAGAAGGCACAAAATGTGGCCACGTCCCTTGGCTAGCAAGTGGCCTAGGGGCAATGTGAGCCTGAGTGGGCAACACTGTGACACAGGACAGGGTGTGTCACAGTGTTGCCCATTGTGACTGCAGGACCAAAAGGAACCAGGGCTGAGAGGAACCTGGAAACATGCTGGGGTGGTGCCAGACGAGGGCCTGGAGAGAGCCTCCACCCACCCTCACAGGGCCTGGTGGAGACAGACATGAGGAGGGGC-ACCTGCCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30166125 584 + 172585720 ACATAATTTTATGCTTTTTGAAAATAAGTAATAAACTTTTCTGGCTAAGTTGTTAGTAATGGTAATCTCTCTAATGTGCTTAAAGACAGTCAAATCTACAGGGTTCCCATCTTCACTGGATGTCCGTGCTT-CCTGCTTGATCTGTTTTCAGGTGTCTTTGCCTGTTTGTTGCCCCTATGACTGCTGACATCCTGCCTTTTGGTGGAAACCACACTCTTCCTTGCCCATTGAGGGCTGGAAAATTGGATGACTAAACTCAGTGAAGATAGAAGGTAACACTTGTTCTACATGGGTGCCTTCATCACCTGCACTTGAAAGCAAGGCTGAGGTGCAGAAGGCACAAAATGTGGCCATGTCCCTTGGCTGGCAAGTGGCCCATGAGCAATGTGAGCCTGAGTGGATGACACTGTGACACAGTTCAGGGTGCATCACAATGTTGCCCTTTGTGACTGCAGGGCCAAAAGGAACCAGGGCTGAGAGGAACCTGGAGACATGCTGGGGTGGGGCCAGATGAGGGCCTGGAGAGAGCCTCCACCCACCGTCACAGGG-CCGGGGGAGACAGAT-TGAGGAGAGGC-ACCTGCCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29829585 584 - 170955103 ACATAATTTTATGCTTTTTGAAAATAACTAATAAACTTTTCTGGCTAAGTTGTTAGTAATGGTAATCTCTCTAATGTGCTTAAAGACAGTCAAATCTACAGGGTTCCCATCTTCACTGGATGTCCGTGCTT-CCTGCTTGGTCTGTTTTCAGGTGTCTTTGCCTGTTTGTTGCCCCTATGACTGCTGACATCCTGCCTTTTGGTGGAAACCACACTCTTCCTTGCCCATTGAGGGCTGGAAAATTGGATGACTAAACTCAGTGAAGATAGAAGGTAACACTTGTTCTACATGGGTGCCTTCATCACCTGCACTTGAAAGCAAGGCTGAGGTGCAGAAGGCACAAAATGTGGCCATGTCCCTTGGCTGGCAAGTGGCCTATGAGCAATGTGAGCCTGAGTGGATGACACTGTGACACAGTTCAGGGTGCATCACAATGTTGCCCTTTGTGACTGCAGGGCCAAAAGGAACCAGGGCTGAGAGGAACCTGGAGACATGCTGGGGTGGGGCCAGATGAGGGCCTGGAGAGAGCCTCCACCCACCGTCACAGGG-CCGGGGGAGACAGAT-TGAGGAGAGGC-ACCTGCCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2878862 584 -   2996164 ACATAATTTTATGCTTTTTGAAAATAAGTAATAAACTTTTCTGGCTAAGTTGTTAGTAATGGTAATCTCTCTAATGTGCTTAAAGACAGTCAAATCTACAGGGTTCCCATCTTCACTGGATGTCCGTGCTT-CCTGCTTGGTCTGTTTTCAGGTGTCTTTGCCTGTTTGTTGCCCCTATGACTGCTGACATCCTGCCTTTTGGTGGAAACCACACTCTTCCTTGCCCATTGAGGGCTGGAAAATTGGATGACTAAACTCAGTGAAGATAGAAGATAACACTTGTTCTACACGGGTGCCTTCATCACCTGCACTTGAAAGCAAGGCTGAGGTGCAGAAGGCACAAAATGTGGCCATGTCCCTTGGCTGGCAAGTGGCCCATGAGCAATGTGAGCCTGAGTGGATGACACTGTGACACAGTTCAGGGTGCATCACAATGTTGCCCTTTGTGACTGCAGGGCCAAAAGGAACCAGGGCTGAGAGGAACCTGGAGACATGCTGGGGTGGGGCCAGATGAGGGCCTGGAGAGAGCCTCCACCCACCGTCACAGGG-CCGGGGGAGACAGAT-TGAGGAGAGGC-ACCTGCCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     627023 584 +    766320 ACATAATTTTATGCTTTTTGAAAATAACTAATAAACTTTTCTGGCTAAGTTGTTAGTAATGGTAATCTCTCTAATGTGCTTAAAGACAGTCAAATCTACAGGGTTCCCATCTTCACTGGATGTCCGTGCTT-CCTGCTTGGTCTGTTTTCAGGTGTCTTTGCCTGTTTGTTGCCCCTATGACTGCTGACATCCTGCCTTTTGGTGGAAACCACACTCTTCCTTGCCCATTGAGGGTTGGAAAATTGGATGACTAAACTCAGTGAAGATAGAAGATAACACTTGTTCTACATGGGTGCCTTCATCACCTGCACTTGAAAGCAAGGCTGAGGTGCAGAAGGCACAAAATGTGGCCATGTCCCTTGGCTGGCAAGTGGCCTATGAGCAATGTGAGCCTGAGTAGATGACACTGTGACACAGTTCAGGGTGCATCACAATGTTGCCCTTTGTGACTGCAGGGCCAAAAGGAACCAGGGCTGAGAGGAACTTGGAGACATGCTGGGGTGGGGCCAGATGAGGGCCTGGAGAGAGCCTCCACCCACCGTCACAGGG-CCGGGGGAGACAGAT-TGAGGAGAGGC-ACCTGCCCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29082910 581 -  71996105 ACATAATTTTATGCTTTTTGAAAATAACTAATAAATTTTTCTGGCTAAGTTGTTAGTAATGGTAATGTCTCTAATGTGCTTGAAGACAGTCAAATCTACAGGGTTCCCATCTTCACTGGATGCCTGTGCTT-CCTGCTTGGTCTGTTTTCAGGTGTC--TGCCTGTTTGTTGCCCCTGTGACTGCTGACATCCTGCCTTTTGGTGGAAACCACACTCTTCCTTGCCCATGGAGGGCTGGAAAATTGGATGACTAAACTCAATGAAGATAGAAGATAACATTTGTTCTACAT--GTGCCTTCATCACCTGCACTTGAAAGCAAGGCTGAGGTGCAGAAGGCACAAAATGTGGCCACGTCCCTTGGCTGGCAAGTGGCCTATGAGCAATGTGAGCCTGAGTGGATGACACTGTGACACAGTTCAGGGTGCATCACAGTGGTGCCCATTGTGACTGCAGGGCCAAAAGGAACCAGGGCTGAGAGGAACCTGGAGACATGCTGGAGTGGGGCCAGACGAGGGCCTGGAGGGGGCCTCCACCCACCCTCACAGGGTCTGGGGGAGACAGAT-TGAGGAGAGGC-ACCTGCCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      19398 584 +    119286 ACATAATTTTATGCTTTTTGAAAATAACTAATAAACTTTTCTGGCTAAGTTGTTAGTAATGGTAATCTCTCTAATGTGCTTAAAGACAGTCAAATCTACAGGGTTCCCATCTTCACTGGATGCCCGTGCTT-CCTGCTTGGTCTGTTTTCAGGTGTCTTTGCCTGTTTGTTGCCCCTATGACTGCTGACATCCTGCCTTTTGGTGGAAACCACACTCTTCCTTGCCCATTGAGGGTTGGAAAATTGGATGACTAAACTCAATGAAGATAGAAGATAACACTTGTTCTACATGGGTGCCTTCATCACCTGCACTTGAAAGCAAGGCTGAGGTGCAGAAGGCACAAAATGTGGCCACGTCCCTTGGCTGGCAAGTGGCCTATGAGCAGTGTGAGCCTGAGTGGATGACACTGTGACACAGTTCAGGGTGCATCACATTGTTGCCCATTGTGACTGCAGGGTCAAAAGGAACCAGGGCTGAGAGGAACCTGGAGACATGCTGGGGTGGGGCCAGACGAGGGCCTGGAGAGAGCCTCCACCCACCCTCACGGGG-CCGGCGGAGACAGAT-TGAGGAGAGGC-ACCTGCCCC
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2735530 584 -   3067355 ACATAATTTTATGCTTTTTGAAAATAACTAATAAACTTTTATGGCTAAATTGTTAGTAATGGTCATCTCTCTAATGTGCTTAAAGACAGTCAAATCGACAGGGTTCCCATCTTCACTGGATGCCTGTGCTT-CCTGCTTGGTCTGTTTTCAGGTGTCTTTGCCTGTTTGTTGCCCCTGTGACTGCTGACATCCTGCCTTTTGGTGGAAACCACACTCTTCCATGCCCATTGAGGGTTGGCAAATTGGATGACTAAACTCAATGAAGATAGAAGATAACATTTGTTCTACATGGGTGCCTTCATCACCTGCACTTGAAAGCAAGGCTGAGGTACAGAAGGCACAAAATGTGGCCACGACCCTTGGCTGGCAAGTGGCCTATGAGCAATGTGAG-CTGAGTGGATGACACTGTGACACAGTTCAGGGTGCATCACAATGTTGCCCATTGTGACTGCAGGGCCAAAAGGAACCAGGGCTGAGAGGAACCTGGAGACATGCTGGGGTGGGGCCAGACGAGGGCCTGGAGAGAGCCTCCACCCACCCTCACGGGGCCTGGGGGAGACAGAC-TGAGGAGAGGC-ACCTGCCCC
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     319835 585 -   1771730 ACATACTTTTATGCTTTTTGAAAATAGCTAATAAAGCTTTCTGGCTAAGTTGTTAGTAATGATAATCTCTCTAATGTGCTTAAAGGCGGCCAAAGCTGCAGGGTTCCCACCCTCACTGGGTACCTGTGCTTCCCTGCTTGTCCTATTTTCAAGTGTCTTTCCCTGTTGGTTGCCCC-ATGACTGCTGACATCACGCCTTCTGGAGGAAACCACACTCTTCCTTGCCCATTGAGGGTTGGAAAACTGGATAATTAGGCTGGATGAAGAGAGGAGATACCATTTGCTCTGCGTGGGCACCATCATCACCTGTACTTGAAAGCGAGGCTGAGGTGCAGAAGGCACAAAATGTGGCCACATCTCTCAGCTGGCAAGTGGCCCAGGGGTAATGTGAGCCTGAGTGGGCAACTCTGTGACACAGGACAGGGTGCATTGCAGCGTTGGCCACTGTGACTGCAGGGCCAAAAGGAACCAGGGCTGAGAGAAACCTGGAGACATGCTGGGGCGGGGCCAGACCAGGGCCTGGAGAGAGCCTCCA-CTGCCCTCACAGGGCCTGGGGGAGACGGAC-CCAGGAGGGTGCACCTGCCCG
i cebCap1.NW_016107755v1   I 364 C 0
s aotNan1.NW_018509740v1     392778 584 -    457564 ACATACTTTTATGCTTTTTGAAAATAGCTAATAAAGCTTTCTGGCTAAGTTGTTAGTAATGGTAATCTCTGTAATGTGCTTAAAGGCGGCCAAAGCTGCAGGGTTCTCACCCTCACTGGGTACCTGTGCTTCCCTGCTTCTTCTATTTTCAAGTGTCTTTGCCTGTTGGTTGCCCC-ATGACTGCTGACATCACGCCTTCTGGAGGAAACCACACTCTTCCTTGCCCATTGAGGGTTGGAAAGTTGGATAATTAGGCTGGATGAAGAGAGGAGATATCATTTGCTCTGCGTGGGCACCATCATCACCTGCACTTGAAAGCGAGGCTGAGGTGCAGAAGGCACAAAATGTGGCCACATCTCTCAGCTGGAAAGCGTCCTAGGGACAATGTGAACCTGAGTGGGCAACACTGTGACACAGGACAGGGTGCATCGCAGTGTTGCCCACTGTGACTGGAGGGCCAAAAGGAACTAGGGCTGAGAGAAACCTGGAGACATGCTGGGGTGGGGCCCGACCAGGGCCTGGAGAGAGCCCCCA-CTGCCCTCACAGGGCCTGGGGGAGATGGAC-CCAGGAGGGGG-ACCTGCCCC
i aotNan1.NW_018509740v1   I 352 I 16316
e calJac3.chr4             30104189 1649 + 171630274 I

a score=45950.000000
s hg38.chr6_GL000254v2_alt   976046 8 +   4827813 TCTCCCCT
s panTro5.chr6             29938779 8 + 175400573 TCTCGCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30172398 8 + 173848474 TCTCGCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5972718 8 +   6154872 TCTCCCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74678185 8 + 122973662 TCTCCCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30166709 8 + 172585720 TCTCTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29830169 8 - 170955103 TCTCTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2879446 8 -   2996164 TCTCTCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     627607 8 +    766320 TCTCTCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29083491 8 -  71996105 TCTCTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      19982 8 +    119286 TCTCTCTT
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2736114 8 -   3067355 TCTCTCTT
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     320420 8 -   1771730 TCTCCCCT
i cebCap1.NW_016107755v1   C 0 I 70291
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=4765865.000000
s hg38.chr6_GL000254v2_alt   976054 839 +   4827813 TGCAGAGTGGAATGATAGCTGATGACATCATTTTGAAAGTCACAGTACTACAGAGATGTTTGGACACTCATCAGAGGCAGACCTGCTGTGGGAAAGTCAAGGCCTTGGTGCGGAAACCTAAGATTCTGCAAACTGGAACAGGGTTATCCTATGGGTGCcctttagaactctctgggcatgcagaggaggctcgcccttctctagtaatggttcccacttcctacactggaagttgctgcagaaacctcaccccTATGATGCAGTGGGAATTCCACTCaggagctttgcagtaac-agcc----gttatgtccccgtaggagcctgaggagcagttctgggattggaatttaagggtgtttgatcaaagggccagaatcaagctggataaattaaaaaaaacacctttggcttgggagcactttctcagggtatgggtttatcaaggacctcagggcatggggcaaacccactgctggggtggacccatgtagactggaaaaaatgatgtccaactctcagtaagttagacatgagttagttgtcctggaacatgtagaggatggataatgaggctgagggaagtgggtgtgtgggatggagacatcatgtga-accagaatgcccactagggccatgctccacagaggacccatagggcacaccttccaccagagcctcaggaatgtgctggtgagagggacttgcattgctaagaagcgtcggggtggtgtcctctgcaggctgggtgtgatggcaggaaggaggtcctatagttgggctcattgatattcctgaggaaagtgtggccttgaaaaggcagagaactaaatggtgacagtggcct
s panTro5.chr6             29938787 840 + 175400573 TGCAGAGTGGAATGATAGCTGATGACATCattgtgaaagtcacagtactacagagatgtttggacactcatcagaggcagacctgctgtgggaaagtcaaggccttggtggggaaacctaagattctgcaaactggaacagggttatcctatgggtgccctttagaactctctgggcatgcagaggaggctcgtccttctctagtaatggttcccacttcctacactggaagatgctgcagaagcctcaccccTATGATGCAGTGGGAATTCCACTCaggagctttgcaggaac-agcc----gttatgtccccgtaggagcctgaggagcagttctgggattggaatttaagggtgtttgatcaaagggccagaatcaagctggataaatttaaaaaaacacctttggcttgggagcactttctctgggtatgggtttatcaaggacctcagggcatggggcaaacccactgctggggtggacccatgtagactggaaaaaatgatgtccaactctcagtaagttagacatgagttagttgtcctggaacatgtagaggatggataatgaggctgagggaagtgggggtgtgggatggagacatcatgtgagaccagaatgcccactagggccatgctccacagaggacccatagggcacaccttccaccagagcctcaggaatgtgccggtgagagggacctgcattgctaagaagcgtcggggtggcgtcctctgcaggctgggtgtgatggcaggaaggaggtcctatagttgggctcattgatattcatgaggaaagtgtggccttgaaaaggcagagaactaaatggtgacagtggcct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30172406 838 + 173848474 TGCAGAGTGGAATGATAGCTGATGACATCattgtgaaagtcacagtactacagagatgtttggacactcatcagaggcagacctgctgtgggaaagtcaaggccttggtggggaaacctaagattctgcaaactggaacagggttatcctatgggtgccctttagaactctctgggcatgcagaggaggctcgtccttctctagtaatggttcccacttcctacactggaagatgctgcagaagcctcaccccTATGATGCAGTGGGAATTCCACTCaggagctttgcaggaac-agcc----gttatgtccccgtaggagcctgaggagcagttctgggattggaatttaagggtgtttgatcaaagggccagaatcaagctggataaattt-aaaaaacacctttggcttgggagcactttctctgggtatgggtttatcaaggacctcagggcatggggcaaacccactgctggggtggacccatgtagactggaaaaaatgatgtccaactctcagtaagttagacatgagttagttgtcctggaacatgtagaggatggataatgaggctgagggaagtgggtgtgtgggatggagacatcatgtgagaccagaatgcccactagggccatgctccacagagga-ccatagggcacaccttccaccagagcctcaggaatgtgccggtgagagggacctgcattgctaagaagcgtcagggtggtgtcctctgcaggctgggtgtgatggcaggaaggaggtcctatagttgggctcattgatattcatgaggaaagtgtggccttgaaaaggcagagaactaaatggtgacagtggcct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5972726 840 +   6154872 TGCAGGGTGGAATGATAGCTGATGACATCATTGTGAAAGTCACAGTACTACAGAGATGTCTGGACACTCATCAGAGGCAGACCTGCTGTGGGAAAGTCAAGGCCTTGGTGGGGAAACCGAAGATTCTGCAAACTGGAACAGGGTTATCCTATGGGTGCcctttagaactctctgggcatgcagaggaggctcgcccttctctagtaatggttcccacttcctacactggaagatgctgcagaagcctcacccctatgatgcagcgggAATTCCACTCaggagctttgcagtaac-agcc----gttatgtccccgtaggagcctgaggagcagttctgggattggaatttaagggtgtttgatcaaagggccagaatcaagctggataaatttaaaaaaacacctttggcttgggagcactttctcagggtatgggcttatcaaagacctcagggcatggggcaaacccactgctggggtggacccatgtagactggaaaaaatgatgtccaactctcagtaagttagacatgatttagttgtcctggaacatgtagaggatggataatgaggctgagggaagtgggtgtgtgggatggacacatcatgtgagaccagaatgcccactagggccatgctccacagaggacccatagggcacaccttccaccagagcctcaggaatgtgccggtgagagggacctgcattgctaagaagcgtcggggtggtgtcctctgcaggctgggtgtgatggcaggaaggaggtcctatagttgggctcattgatattcatgaggaaagtgtggccttgaaaaggcagagaactaaatggtgacagtggcct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74678193 839 + 122973662 TGCAGAGTGGAATGATAGCTGATGACATCattgtgaaagtcacagtactacagagatgtttggacactcatcagaggcaggcctgctgtgggaaagtcaaggccttggtggagaaacctaagattctgcaaactggaacagggttatcctatgggtgccctttagaaccctctgggcatgcagaggaggctcgcccttctctagtaatggttcccacttcctgcactggaagatgctgcagaagcctcaccccTATGACGCAGTGGGAATTCCACTCaggagctttgcaggaactagcc----gttatgtccccataggagcctgaggagcagttctaggattggaatttgagggtgtttgatcaaaggcccagaatcaagctcgataaat--aaaaaaacacctttggcttgggagcactttctcagggtatgggtttatcaaggacctcagggcatggggcaaacccactgctggggtggacccatgtagactggaaaaaatgatgtccaactctcagtaagtcagacataacttagttgtcctggaacatgtagaggatggataatgaggctgagggaagtgggagtatgggatggagacatcatgtgagaccagaatgcccattagggccatgctccacagaggacccatagggcacaccttccaccagagcctcaggaacgtgccggtgagaggtacctgcattgctaagaagaattggggtggtgtcctctgcaggctgggtgtgatggcaggaaggaggtcctatagttgggctcattgatattcctggggaaagtgtggccttgaaaaggtagagaaccaaatggtgacagtgacct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30166717 839 + 172585720 TGCAGAGTGGAATGACAGCTGATGACATCATTGTGAAAGCCACAGTACTACAGAGATGTTTGGACATTCATCAGAGGCAGGCCTGTTGTGGGAAAGTCAGGGCTCTGGTGAGGAAATCTGAGATTCTGCAAACTGGAACCGGGTTATCCTATGGGTGccctttcgaaccctctgggcatgcagaggaggctcgctcttctctggtaatagttcccacttcctacactggaatatgctgcagaagcctcacccctatgatgcaatgggaatcccACTCAGTAGTTTtgcagtaactagccggtaggtatgcccccgtaggagcctgaggagcagttctgggattggaatttgagggtgtttgatcaaagggccagaatcaagctggataaat---aaaaaacacctttggcttgggagcactttctcagggtatgggtttatcaaggacctcagggcatggggcaaacccactgctagggtggacccatgtagactggaaaaaatgatgctcaactctcagtaagttagacatgacttagttgta--ggaacatgtagtggatggataaagaggccgagggaagttggtgtgtgggatggagacatcatgtgagaccagaaggcccactagggccatgctccacagaggacccagagggcacaccttccaccagagcctcaggaatgtaccggtaagagggacctgtattcctaagaggcgtcagggtggtgtcctctgcaggctgggtgtgatggcaggaaggaggtcct-tagttgggctcattgatattcctggggaaaatgtggccctgaaaagattgagaaccaaatggtggcagtgacct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29830177 839 - 170955103 TGCAGAGTGGAATGACAGCTGATGACATCattgtgaaagccacagtactacagagatgtttggacattcatcagaggcaggcctgttgtgggaaagtcagggctctggtgaggaaatctgagattctgcaaactggaaccgggttatcctatgggtgccctttcgaaccctctgggcatgcagaggaggctcgctcttctctggtaatagttcccacttcctacactggaatatgctgcagaagcctcacccctatgatgcaatgggaatcccACTCAGTAGTTTtgcagtaactagccggtaggtatgcccccgtaggagcctgaggagcagttctgggattggaatttgagggtgtttgatcaaagggccagaatcaagctggataaat---aaaaaacacctttggcttgggagcactttctcagggtatgggtttatcaaggacctcagggcatggggcaaacccactgctagggtggacccatgtagactggaaaaaatgatgctcaactctcagtaagttagacatgacttagttgta--ggaacatgtagtggatggataaagaggccgagggaagttggtgtgtgggatggagacatcatgtgagaccagaaggcccactagggccatgctccacagaggacccagagggcacaccttccaccagagcctcaggaatgtaccggtaagagggacctgtattcctaagaggcgtcagggtggtgtcctctgcaggctgggtgtgatggcaggaaggaggtcct-tagttgggctcattgatattcctggggaaaatgtggccctgaaaagattgagaaccaaatggtggcagtgacct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2879454 839 -   2996164 TGCAGAGTGGAATGACAGCTGATGACATCATTGTGAAAGCCACAGTACTACAGAGAAGTTTGGACATTCATCAGAGGCAGGCCTGTTGTGGGAAAGTCAGGGCTCTGGTGAGGAAACCTGAGATTCTGCAAACTGGAACCGGGTTATCCTATGGGTGccctttcgaaccctctgggcatgcagaggaggctcgctcttctctggtaatagttcccacttcctacactggaatatgctgcagaagcctcacccctatgatgcaatgggaatcccACTCAGTAGTTTtgcagtaactagccggtaggtatgcccccgtaggagcctgaggagcagttctgggattggaatttgagggtgtttgatcaaagggccagaatcaagctggataaat---aaaaaacacctttggcttgggagcactttctcagggtatgggtttatcaaggacctcagggcatggggcaaacccactgctagggtggacccatgtagactggaaaaaatgatgctcaactctcagtaagttagacatgacttagttgta--ggaacatgtagtggatggataaagaggccgagggaagttggtgtgtgggatggagacatcatgtgagaccagaaggcccactagggccatgctccacagaggacccagagggcacaccttccaccagagcctcaggaatgtaccggtaagagggacctgtattcctaagaggcgtcagggtggtgtcctctgcaggctgggtgtgatggcaggaaggaggtcct-tagttgggctcattgatattcctggggaaaatgtggccctgaaaagattgagaaccaaatggtggcagtgacct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     627615 835 +    766320 TGCAGAGTGGAATGACAGCTGATGACATCCTTGTGAAAGTCACAGTACTACAGAGATGTTCGGACATTCATCAGAGGCAGGCCTGTTGTGGGAAAGTCAGGGCTCTGGTGAGGAAACCTGAGATTCTGCAAACTGGAACCGGGTTATCCTATGGGTGCcctttagaaccctctgggcatgcagaggag----gctcttctctggtaatagttcccacttgctacactggaatctgctgcagaagcctcacccctatgatgcaatgggaatcccACTCAGTAGTTTtgcagtaactagccggtaggtatgtccccgtaggagcctgaggaacagttctgggactggaatttgagggtgtttgatcaaagggccagaatcaagctggataaat---aaaaaacacctttggcttgggagcactttctcagggtttgggtttatcaaggacctcagggcatggggcaaatccactgctggggtagacccatgtagactggaaaaaatgatgcccaactctcagtaagttagacatgacttagttgta--ggaacatgtagaggatggataaagaggccgagggaacttggtgtgtgggatggagacatcatgtgagaccagaaggcccactagggccatgctccacagaggacccagagggcacaccttccaccagagcctcaggaatgtaccggtaagagggacctgcattcctaagaggcgtcagggtggtgtcctctgcaggctgggtgtgatggcaggaaggaggtcct-tagttgggctcattgatattcctggggaaaatgtggccctgaaaagatagagaaccaaatggtggcagtgacct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29083499 838 -  71996105 TGCAGAGTGGAATGACAGCTGATGACATCattgtgaaagccacagtactacagagatgtttggacattcatcagaggcaggcctgttgtgggaaagtcagggctctggtgaggaaacctgagattctgcaaactggaaccgggttat-ctatgggttccctttagaaccctctgggcatgcagaggaggctctctcttctctggtaatagttcccacttgctacactggaatctgctgcagaagcctcacccctatgatgcaatgggaatcccACTCAGCAGTTTtgcagtaactagccggtaggtatgcccccgtaggagcctgaggagcagttctgggattggaatttgagggtgtttgatcaaagggccagaatcaagctggataaat---aaaaaacacctttggcttgggagcactttctcagtgtgtgggtttatcaaggacctcagggcattgggcaaatccactgctggggtggacccatgtagactggaaaaaatgatgcccaactctcagtaagttagacatgacttagttgta--ggaacatgtagaggatggataaagaggccgagggaagttggtgtgtgggatggagacatcatgtgagaccagaaggcctactagggccatgctccacagaggacccagagggcacaccttccaccagagcctcaggaatgtaccggtaagagggacctgcattcctaagaggcgtcagggtggtgtcctttgcaggctgggtgtgatggcaggaaggaggtcct-tagttgggctcattgatattcctggggaaaatgtggccctgaaaagatagagaaccaaatggtggcagtgacct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      19990 839 +    119286 TGCAGAGTGGAATGACAGCTGATGACATCATTGTGAAAGTCACAGTACTACAGAGATGTTCGGACATTCATCAGAGGCAGGCCTGTTGTGGGAAAGTCAGGGCTCTGGTGAGGAAACCTGAGATTCTGCAAACTGGAACCGGATTATCCTATGGGTGCcctttagaaccctctgggcatgcagaggaggctcgctcttctctggtaatagttcccacttgctacactggaatctgctgcagaagcctcacccctatgatgcaatgggaatcccACTCAGTAGTTTtgcagtaactagccggtaggtatgtccccgtaggagcctgagaagcagttctgggattggaatttgagggtgtttgatcaaagggccagaatcaagctggataaat---aaaaaacacctttggcttgggagcactttctcagggtatgggtttatcaaggacttcagggcatggggcaaacccactgctgaggtggacccatgtagactggaaaaaatgatgctcaactctcagtaagttagacttgacttagttgta--ggaacatgtagtggatggataaagaggccgagggaagttggtgtgtgggatggagacatcatgtgagaccagaaggcccactagggccatgctccacagaggacccagagggcacaccttccaccagagcctcaggaatgtaccggtaagagggacctgcattcctaagaggcgtcagggtggtgtcctctgcaggctgggtgtgatggcaggaaggaggtcct-tagttgggctcattgatattcctggggaaaatgtggccctgaaaagatagagaaccaaatggtggcaGTGACCT
i manLeu1.NW_012101411v1   C 0 I 4
s colAng1.NW_012115566v1    2736122 839 -   3067355 TGCAGAGTGGAATGATAGCTGCTGACATCattgtgaaagtcacagtactacagagatgttcggacattcatcagaggcaggcctgttgtgggaaagtcagggctctggtgaggaaacctgagattctgcaaactggaactgggttatcctatgggtgccctttagaaccctctgggcatgcagaggaggctctctcttctctggtaatagttcccacttcctacactggaatatgctgcagaagcctcacccctatgatgcaatgggaatcccACTCAGTAGTTTtgcagtaaccagccggtaggtatgtccccgtaggagcctgaggagcagttctgggattggaatttgagggtgtttgatcaaaggcccagaatcaagctggataaat---gaaaaacacctttggcttgggagcactttctcagggtatgggtttatcaaggacctcagggcatggggcaaacccactgctggggtggacccaggtagactggaaaaaatgatgcccaactctcagtaagttagacatgacttagttgta--ggaacatgtagaggatggataaagaggccgagggaagttggtgtatgggatggagacatcatgtgagaccagaaggcccacgagggccgtgctccacagaggacccagagggcacaccttccaccagagcctcaggaatgtaccggtaagagggacctgcattcctaagaggcgtcagggtggtgtcctctgcaggctgggtgtgattgcaggaaggaggtcct-tagttgggctcattgatattcctggggaaaatgtggccctgaaaagatagagaaccaaatggtggcagtgacct
i colAng1.NW_012115566v1   C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     320428 70291 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=1301400.000000
s hg38.chr6_GL000254v2_alt   976893 277 +   4827813 gcaaaagccagagggcacggttaacttgacaatctcagaggagcagctgaggcagcttgatctgcagggagttgtggggaaggttaatagagggtggtgtc---agaaaa-gaca-gcagccaacaagggcactgcttgacatctatgataagaaagcaagaattgatgagcagggggctgagggtgtttaactcaatacaaagtcatgatcccattctcaattcctaaatgtcaaccaagtttcagattcagatcccagttacagagaaggagtccctatc
s panTro5.chr6             29939627 277 + 175400573 gcaaaagccagagggcacggttaacttgacaatctcagaggagcagctgaggcagcttgatctgcagggagttgtggggaaagttaatagagggtggtgtc---agaaaa-gaca-gcagccaacaagggcactgcttgacatctatgataagaaagcaagaattgatgagcaggaggctgagggtgtttaactcaatacaaagtcatgatcccattctcaattcctaaacgtcaaccaagtttcagattcagatcccagttacagagaaggagtccctatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30173244 277 + 173848474 gcaaaagccagagggcacggttaacttgacaatctcagaggagcagctgaggcagcttgatctgcagggagttgtggggaaagttaatagagggtggtgtc---agaaaa-gaca-gcagccaacaagggcactgcttgacatctatgataagaaagcaagaattgatgagcaggaggctgagggtgtttaactcaatacaaagtcatgatcccattctcaattcctaaacgtcaaccaagtttcagattcagatcccagttacagagaaggagtccctatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5973566 277 +   6154872 gcaaaagccagagggcacggttaacttgacaatctcagaggagcagctgaggcagcttgatctgcagggagttgtggggaaggttaatagagggtggtgtc---agaaca-gaca-gcagccaacaagggcactgcttgacatctatgataagaaagcaagaattgatgagcaggaggctgagggtgtttaactcaatacaaagtcatgatcccattctcaattcctaaacatcaaccaagtttcagattcagatcccagttacagagaaggagtccctatc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74679032 278 + 122973662 gcaaaagccagagggcaaggttaccatgacaatctcagaggagcagctgaggcagcttcatctgcagggaattgtggggaaggttaatagagggtggtgtc---agaaca-gacaggcagccaacaagggcactgcttgatatccatgataagaaagcaagaattgatgagcaggaggctgagggtgtttaactgaatacaaagtcatgatcccattctcaattcctaaacttcaaccaagtttcagattcagattccagttacagagaaggagtccctatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30167556 275 + 172585720 gcaaaagccagagggcacggttaccatgacaatctcagaggagcatctgaggcagcttgatctgcagggagttgtggggaaggttaatagagggtggtgtc---agaata-gacaggcagccaacaagggtgctgcttgatgtccatgataagaaagcaagaattgatgagcaggaggctgagggtgtttaactcaatacaaagtcatgatcccactctcaattcctaaacttcaaccaagtttcagatttagatcccagttctag---aggagtccctacc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29831016 275 - 170955103 gcaaaagccagagggcacggttaccatgacaatctcagaggagcatctgaggcagcttgatctgcagggagttgtggggaaggttaatagagggtggtgtc---agaata-gacaggcagccaacaagggtgctgcttgatgtccatgataagaaagcaagaattgatgagcaggaggctgagggtgtttaactcaatacaaagtcatgatcccactctcaattcctaaacttcaaccaagtttcagattcagatcccagttctag---aggagtccctacc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2880293 279 -   2996164 gcaaaatccagagggcacggttaccatgacaatctcagaggagcatctgaggcagcttgatctgcagggagttgtggggaaggttaatagagggtggtgtcccaaggttaggacaggttgtcaacaagggtgctgcttgatgtccatgataagaaagcaagaattgatgagcaggaggctgagggtgtttaactcaatacaaagtcatgatcccactctcaattcctaaacttcaaccaagtttcagattcagatcccagttctag---aggagtccctacc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     628450 275 +    766320 gcaaaagccagagggcacggttaccatgacaatctcagaggagcatctgaggcagcttgatctgcagggagttgtggggaaggttaatagagggtggtgtc---agaaca-gacaggcagccaacaagggtgctgcttgatgtccatgataagaaagcaagaattgatgagcaggaggctgagggtgtttcactcaatacaaagtcatgatcccactctcaattcctaaacttcaaccaagtttcagattcagatcccagttctag---aggagtccctatc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29084337 275 -  71996105 gcaaaagccagagggcacagttaccatgacaatctcagaggagcatctgaggcagcttgatctgcagggagttgtggggaaggttaatagagggtggtgtc---agaata-gacaggcagccaacaagggtgctgcttgatgtccatgataagaaagcaagaattgatgagcaggaggctgagggtgcttcactcaatacaaagtcatgatcccactctcaattcctaaacttcaaccaagttgcagattcagatcccagttctag---aggagtccctacc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2736961 275 -   3067355 gcaaaagccagagggcacggttaccatgataatctcagaggagcatctgaggcagcttgatctgcagggagttgtggggaaggttaatagagggtggtgtc---agaata-gacaggcagccaacaagggtgctgcttgatatccatgataagaaagcaagaattgatgagcaggaggctgagggtgtttaactcaatacaaagtcatgatcccactctcaattcctaaacttcaaccaagtttcagattcagatcccagttctag---aggagtccctacc
i colAng1.NW_012115566v1   C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     320428 70291 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I
e manLeu1.NW_012101411v1      20829   4 +    119286 I

a score=8461223.000000
s hg38.chr6_GL000254v2_alt   977170 1490 +   4827813 ccaggaggaaggaccctggaacctcatggcaagtatatgctggaacaattccctctgtctttctgcaaaggagcctacagtcatttactcaggggactgtacactaggaaagggaaacaggcagaatttgggggagtgttgacattgggtgtgagctaatattgatgcctacaggcctacagcaccattatgtccccagcacagtggggcttacagaagctgggaataaatctggacacatcacaaagagactactgggtccacagacccagccctg-tttatctccccattctccaagtgtgtaattggcattgatgccctggcagctggagtaacccccacattgggtcccaagtctctggaataagggctgtcattttctgaaagccaaagggaaacctctgcaactgacttcatcttggccaaataaaaaatgatattgagtcccagggtgagtcttatgaaaggtgctgtaggtattgtaggtgtagcaccgccattagggagctgaaggatgaggggtgctgttggagttgcctattatcttcatgtaatccagcaatctgtccccaaggaagcctgatggggcctaaagaatgaataagattacttcagacttgaaaaagtaggagtcataattgcagctgccatgctggctggatatcacgggtagagcagattgataaggcctcaggcacagagtgtgcagctgtggatttggtgagtgcattcctttccattccaatgagaaaaactatacatgaagtgattcatgtgggatccacaacacatttattgataattggcctcagggttattgtaactgacctgccctctatagtatagtcttaagagatctgaagaacctggcatcctatagaatggtaaaccagcttatttcatcaacaacatcatgttgactaggatggatgagtaggaggtggaaagtatgctgaaggccttggcaaaacacgtgctctccagaagatggaagataaaccatacagagattcaggagtggccactgtggtgaagttttattcatccagtggttgaggacatccaggagtttctcctccacagtaaaagacaaagtgttgcatcttgcatcctcactacaaggaaggaagcacactgcctggtgagcctctttgagttctgacaataccacatcccacatctattgttttgacctacactctaggagaaataggaggggacttgcttcaattaggcctgctgaggaaaggacac--tggcagattcaggccatgaggcagcgccatccctcagacccacctagaggtgtcagtcctggggaaagatgcaggatggagctgaaacaagcaccagtgggggagtcacatggacggcctgggattctggagtaaggccatgtcatccacagcagagacatatgcccctgttagaagcaacttttggtatgttactggccttgataagatagaatccttgccatgggacagcaaac
s panTro5.chr6             29939904 1490 + 175400573 ccaggagaaaggaccctggaacctcatggcaagtatatgctggaacaattccctctgtctttctgcaaaggagcctacagtcatttactcgggggactgtacactaggaaagggaaacaggcagaatttgggggagtgttgacattgggtgtgagctgatattgatgcctacaggcctacagcaccattatgtccccaccacagtggggcttacagaagctgggaataaatctggacacatcacaaagggactactgggtccacagacccagccctg-tttatctccccattctccaagtgtgtaattggcattgatgccctggcagctggagtaacccccacattgggtcccaagtctctggaataagggctgtcattgtctgaaagccaaagggaaacctctgcaactgacttcatcctggccaaataaaaaatgatattgagtcccagggtgagtcttatgaaaggtactgtaggtattgtaggtgtagcaccgccattagagagctgaaggatgaggggtgctgttggagttgcctattatcttcgtgtaatccagcaatctgtccccaaggaagcctgacggggcctaaacaatgaatgagattacttcagacttgaaaaagtaggagtcataattgcagctgccaggctggctggatatcactggtagagcagattgataaggcctcaggcacagagtgtgcagctgtggatttggtgagtgcattcctttccattccaatgagaaaaactatacatgaagtgattcatgtgggatccacaacacatttattgataattggcctcagggttattgtaacggacttgccctctatagtatagtcttaagagatctgaagaacctggcatcctatagaatggtaaaccagcttatttcatcaacaacatcatgttgactaggatggatgagtaggaggtgggaaatacgctgaaggccttggcaaaacacgtgctctccagaagatggaagataaaccacacggagattcaggagtggccactgtggtgaagttttattcatccagtggttgaggacatccaggtgtttctcctccacagtaaaagacaaaGTgttgcatcttgcatcctcactacaaggaaggaagcacactgcctggtgagcctctgtgagttctgACAATACcacatcccacatctattgctttgacctacactccaggagaaataggaggggacttgcttcaattaggcctgctgaggaaaggacac--tggcagattcaggccatgaggcagcgccatccctcagacccacctagaggtgtcagttgtggggaaagatgcaggatgcagctgaaacaagcaccagtgggggagtcacatggagggcctgggattctggaataaggccatgtcatccacagcagagacatatgcccctgttagaagcaacttttggtatgttactggccttgataagatagaatccttgccatgggacagcaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30173521 1485 + 173848474 ccaggagaaaggaccctggaacctcatggcaagtatatgctggaacaattccctctgtctttctgcaaaggagcctacagtcatttactcgggggactgtacactaggaaagggaaacaggcagaatttgggggagtgttgacattgggtgtgagctgatattgatgcctacaggcctacagcaccattatgtccccaccacagtggggcttacagaagctgggaataaatctggacacatcacaaagggactactgggtccacagacccagccctg-tttatctccccattctccaagtgtgtaattggcattgatgccctggcagctggagtaacccccacattgggtcccaagtctctggaataagggctgtcattgtctgaaagccaaagggaaacctctgcaactgacttcatcctggccaaataaaaaatgatattgagtcccagggtgagtcttatgaaaggtactgtaggtattgtaggtgtagcaccgccattagagagctgaaggatgaggggtgctgttggagttgcctattatcttcgtgtaatccagcaatctgtccccaaggaagcctgacggggcctaaacaatgaatgagattacttcagacttgaaaaagtaggagtcataattgcagctgccatgctggctggatatcactggtagagcagattgataaggcctcaggcacagagtgtgcagctgtggatttggtgagtgcattcctttccattccaatgagaaaaactatacatgaagtgattcatgtgggatccacaacacatttattgataattggcctcagggttattgtaacggacctgccctctatagtatagtcttaagagatctgaagaacctggcatcctatagaatggtaaaccagcttatttcatcaacaacatcatgttgactaggatggatgagtaggaggtgggaaatacgctgaaggccttggcaaaacacgtgctctccagaagacggaagataaaccacacggagattcaggagtggccactgtggtgaagttttattcatccagtggttgaggacatccaggagtttctcctccacagtaaaagacaaaGTgttgcatcttgcatcctcactacaaggaaggaagcacactgcctggtgagcctctgtgagttctgACAATACcacatcccacatctattgctttgacctacactctaggagaaataggaggggacttgcttcaattaggcctgctgaggaaaggacac--tggcagattcaggccatgaggcagcgccatccctcagacccacctagaggtgtcagtcgtggggaaagatgcaggatgcagctgaaacaagcaccagtgggggagtcacatggagggcctgggattctggagtaaggccatgtcatccacagcagagacatatgcccctgttagaagcaacttttggtatgttactggccttgataagatagaatccttgccatgggacag-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5973843 1490 +   6154872 ccaggaggaaggaccctggaacctcatggcaaatatatgctggaacaattccctctgtctttctgcaaaggagcctacagtcatttactcgggggactgtacactaggaaagggaaacaggcagaatttgggggagtgttgacattgggtgtgagctgatattgatgcctacaggcctatagcaccattatgtccccaccacagtggggcttacagaagctgggaataaatctggacacatcacaaagggactactgggtccacagacccagccctg-tttatctccccattctgcaagtgtgtaattggcattgatgccctggcagctggagtaacccccacattgggtcccaagtctctggaataagggctgtcattgtctgagagccaaagggaaacctctgcaactgacttcatcctggccaaataaaaaatgatattgagtcccagggtgagtcttatgaaaggtactgtaggtattgtaggtgtagcaccgccattagagagctgaaggatgaggggtgctgttggagttgcctattatcttcgtgtaatccagcaatctgtccccaaggaagcctgacggggcctaaagaatgaatgagattacttcagacttgaaaaagtaggagtcataattgcagctgccatgctggctggatatcactggtagagcagattgataaggcctcaggcacagagtgtgcagctgtggatttggtgagtgcattcctttccattccaatgagaaaaactatacatgaagtgattcatgtgggatccacaacacatttattgataattggcctcagggttattgtaactgacctgccctctatagtatagtcttaagagatctgaagaacctggcatcctatagaatggtaaatcagcttatttcatcaacaacatcatgttgactaggatggatgagtacgaggtggaaagtatgctgaaggccttggcaaaacacgtgctctccagaagatggaagataaaccatacagagattcaggagtggccactgtggtgaagttttattcatccagtggttgaggacatccaggaatttctcctccacagtaaaagacaaagtgttgcatcttgcatcctcactacaaggaaggaagcacactgcctggtgagcctctttgagttctgacaacaccacatcccacatctattgctttgatctacgctctaggagaaataggaggggacttgcttcaattaggcctgctgaggaaaggacac--tggcagattcaggccatgaggcagtgccatccctcagacccacctagaggtgtcagtcgtggggaaggatgcaggatggagctgaaacaagcaccagtgggggagtcacgcggagggcctgggattctggagtaaggccatgtcatccacagcagagacatatgcccctgttagaagcaacttttggtatgttactggccttgataagatagaatccttgccatgggacatcaaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74679310 1490 + 122973662 ccaggaggaaggaccctggaacctcatggcaagtatatgctggaacaattccctctgtctttctgcaaaggagcctacagtcattgactcaggggactgtacactaggaaagggaaacaggcagaatttgggggagtgttgacattgggtgtgagatgattttgatgcctataggcctacagcaccatcatgtccccatcacagtggggcttacagaaaccaggaataaacctggacacatcacaaggggactactgggtccacagacccagccctg-tttatctccccattccccaagtgtgtaattggcattgatgcactggcagccggagtaacccccacactgggtcccaagtctctggaataagggctttcattgtctgaaagccaaagggaaacctctgcaactgacttcatcctggccaaataaaaaatgatattgagtctcggggtgaatcttatgaaaggtactgtagggattgtaggtgtagcaccgccattagagagctgaaggatgaggggtgctgttggagttgcctattatcttcatgtcatccagcaatctgtccccagagaagcctgatggggcctaaagaatgaatgagattacttcagacttgaaaaagtaggagtcataattgcagctgccatgctggctggatatcactggtagagcagattgattaggcctcaggcacagagtgtgcagctgtggatttggtgagtgcattcctttccattccaattagaaaaactatacatgaagtgattcatgtgggacccacaacgcgtttatttataattggcctcagggttagtgtaactgacctgccctctatagtatagtcttaagagatctgaagaacccggcatcctgtagaatagtaaatcagcttatttcatcaacaacatcatgttgactaggatggatgagtaagaggtggaaagtaagctgaaggccttggcaaaacatgtgctctccagaagatggaagataaaccacacagagattcaggagtggccactgtggtgaagttttattcgtccagtggttgaggacatccaggagtttctcctccacagtaaaagacaaagtgctgcatcttgcatcctcactacaaggaaggaagcacactgcctggtgagcctctttgagttctgatgacaccacatcccacatctattgctttggcctacactctaggagaaataggaggggacttgcttcagttgggcctaccaaggaaaggacac--aggcagattcaggccatgaggcagcgccatcccttagactcacctggaggtgtcagtcatggggaaagatgcaggatggggctgaaacaagcaccagtgagggagtcacacggagggcctgggattctggagtaaggccatgtcatctacagcagagacatacgcccctgttagaagcaacttttggtatgttactggccctgataagatagaatccttgccatgggacatcaaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30167831 1490 + 172585720 ccaggaggaaggaccctggaacctcatggcaagtatatgctggaacaattccttctgtctttctgccaaggagtctacggccatttactcgggggactgtacactgcgaaagggaaacaggcagaatttgggggagtattgacactgggtgtgagctgatattgatgcctataggcctacagcaccatcatgtccccatcacagtgggacttacagaagccgggaataaacctggacacatcacagtggaaccaccgggtccacagacccagccctg-tttatctccccattccccaagtgtttaattggtattgatgcactggcagctagagtaacccccacactgggtcccaagtctctggaataaggggtctcattgtctgaaagccaaagggaaatctctgcaactgacttcattctggccaaataaaaaaagatattgagtcccagggtgggtcttatgaaaggtactgtagttattgtaggtgtagcacctccattagagagctgaaggatgaggggtggtgttggtgttgcctattattttcacgtgacccagcaatctgtccccaaagaagcctgatggggcctaaagaatgaatgggattacttcagacttgacagagtaggagtcataattgcagctgccatgctggctggatatcactggtagagcagattgataaggcctcaggcacacagtgtgcagctgtggatttggtcagtgtgttcctttccactccaatgagaaaaactgtaaatgaagtgattcatgtgggatccacaacatgtttctttatagttgacctcagggttattgtcactgacctgccctctatagtagagtcttcagagatctgaagaacccggcatcctatagaatagtgaatcagctcatttcatcaacaacatcaggttgactaggatggatgagtaggaggtggaaagtatgctgaaggccttggcaaataacgtgctcttcagaagatggaagataaaccatacagagattcaggagtcgccactgcggtgaagttttatttgtccggtggttgaggacatccaggagtttctcctccagagtaaaagacaaactgttgcatcttgcatcctcacgacaaagaaggaagcacactgcctggtgaacatctttgagttctgacaacaccgcatcccacatctattgctttggcccatactctaggagaaataggaggggacttacttcaattgggcctactgaggaaaggacactgtggcagattcaggccatgaggcagcaccatccctcagacccacctggaggtgtcagtggtggggaaagatgcaggatggagttgaaacaagcaacagtggggaagtcacatagagggcctgggattctggagtaaggccgtgccatccacagcagagccgtatgcccctgttagaagcaacttttggcatgttactggccctgataag--agaatacttgccatgggacatcaaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29831291 1490 - 170955103 ccaggaggaaggaccctggaacctcatggcaagtatatgctggaacaattccttctgtctttctgccaaggagtctacggccatttactcgggggactgtacactgcgaaagggaaacaggcagaatttgggggagtattgacactgggtgtgagctgatattgatgcctataggcctacagcaccatcatgtccccatcacagtgggacttacagaagccgggaataaacctggacacatcacagtggaaccaccgggtccacagacccagccctg-tttatctccccattccccaagtgtttaattggtattgatgcactggcagctagagtaacccccacactgggtcccaagtctctggaataaggggtctcattgtctgaaagccaaagggaaatctctgcaactgacttcattctggccaaataaaaaatgatattgagtcccagggtgggtcttatgaaaggtactgtagttattgtaggtgtagcacctccattagagagctgaaggatgaggggtggtgttggggttgcctattattttcacgtgacccagcaatctgtccccaaagaagcctgatggggcctaaagaatgaatgggattacttcagacttgacagagtaggagtcataattgcagctgccatgctggctggatatcactggtagagcagattgataaggcctcaggcacacagtgtgcagctgtggatttggtcagtgtgttcctttccactccaatgagaaaaactgtaaatgaagtgattcatgtgggatccacaacatgtttctttatagttgacctcagggttattgtcactgacctgccctctatagtagagtcttcagagatctgaagaacccggcatcctatagaatagtgaatcagctcatttcatcaacaacatcaggttgactaggatggatgagtaggaggtggaaagtatgctgaaggccttggcaaataacgtgctcttcagaagatggaagataaaccatacagagattcaggagtcgccactgtggtgaagttttatttgtccggtggttgaggacatccaggagtttctcctccagagtaaaagacaaactgttgcatcttgcatcctcacgacaaagaaggaagcacactgcctggtgaacatctttgagttctgacaacaccgcatcccacatctattgctttggcccatactctaggagaaataggaggggacttacttcaattgggcctactgaggaaaggacactgtggcagattcaggccatgaggcagcaccatccctcagacccacctggaggtgtcagtggtggggaaagatgcaggatggagttgaaacaagcaacagtggggaagtcacatagagggcctgggattctggagtaaggccgtgccatccacagcagagccgtatgcccctgttagaagcaacttttggcatgttactggccctgataag--agaatacttgccatgggacatcaaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2880572 1490 -   2996164 ccaggaggaaggaccctggaacctcatggcaagtatatgctggaacaattccttctgtctttctgccaaggagtctacggccatttactcgggggactgtacactgcgaaagggaaacaggcagaatttgggggagtattgacactgggtgtgagctgatattgatgcctataggcctacagcaccatcatgtccccatcacagtgggacttacagaagccgggaataaacctggacacatcacagtggaaccaccaggtccacagacccagccctg-tttatctccccattctccaagtgtttaattggtattgatgcactggcagctagagtaacccccacactgggtcccaagtctctggaataaggggtctcattgtctgaaagccaaagggaaatctctgcaactgacttcattctggccaaataaaaaatgatattgagtcccagggtgggtcttatgaaaggtactgtagttattgtaggtgtagcacctccattagagagctgaaggatgaggggtggtgttggggttgcctattattttcacgtgacccagcaatctgtccccaaagaagcctgatggggcctaaagaatgaatgggattacttcagacttgacagagtaggagtcataattgcagctgccatgctggctggatatcactggtagagcagattgataaggcctcaggcacacagtgtgcagctgtggatttggtcagtgtgttcctttccactccaatgagaaaaactgtaaatgaagtgattcatgtgggatccacaacatgtttctttatagttgacctcagggttattgtcactgacctgccctctatagtagagtcttcagagatctgaagaacccggcatcctatagaatagtgaatcagctcatttcatcaacaacatcaggttgactaggatggatgagtaggaggtggaaagtatgctgaaggccttggcaaataacgtgctcttcagaagatggaagataaaccatacagagattcaggagtcgccactgtggtgaagttttatttgtccggtggttgaggacatccaggagtttctcctccagagtaaaagacaaactgttgcatcttgcatcctcatgacaaagaaggaagcacactgcctggtgaacctctttgagttctgacaacaccgcatcccacatctattgctttggcccatactctaggagaaataggaggggacttacttcaattgggcctactgaggaaaggacactgtgtcagattcaggccatgaggcagcaccatccctcagacccacctggaggtgtcagtggtggggaaagatgcaggatggagctgaaacaagcaacagtggggaagtcacatagagggcctgggattctggagtaaggccgtgccatccacagcagagccatatgcccctgttagaagcaacttttggcatgttactggccctgataag--agaatacttgccatgggacatcaaac
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     628725 1486 +    766320 ccaggaggaaggaccctggaacctcatggcaagtatatgctggaacaattccttctgtctttctgccaaggagtctacggccatttactcgggggactgtacactgggaaagggaaacaggcagaatttgggggagtattgacactgggtgtgagctgatattgatgcctataggcctacagcaccatcatgtccccatcacagtgggacttacagaagccgggaataaacctggacacatcacagtggaaccaccgggtccacagacccagccctgttttatctccccattccccaagtgtttaattggtattgatgcactggcagctagagtaacccccacactgggtcccaagtctctggaataagggctctcgttgtctgaaaaccaaagggaaatctctgcaactgacttcatcctggccaaataaaaaatgatattgagtcccagggtgggtcttatgaaaggtactgtagttattgtaggtgtagcacctccattagagagctgaaggatgaggggtggtgttggggttgcctattattttcatgtgacccagcaatctgtccccaaagaagcctgatggggcctaaagaatgaatgggattacttcagacttgacagagtaggagtcataattgcagctgccatgctggctggatatcactggtagagcagattgataaggcctcaggcatacagtatgcagctgtggatttggtcagtgcattcctttccactctaatgagaaaagctctacatgaagtgattcatgtgggatccacaacatgtttctttacagttgacctcagggttattgtcactgacctgccctctatagt--agtcttcagagatctgaagaacccggcatcctatagaatagtaaatcagctcatttcat---caacatcatgttgactaggatggatgagtaggaggtggaaagtatgctgaaggccttggcaaataacgtgctcttcagaagatggaagataaaccatacagagattcaggagtggccactgcggtgaagttttatttgtccggtggttgaggacatccaggagtttctcctccagagtaaaagacaaactgttgcatcttgcatcctcacgacaaagaaggaagcacactgcctggtgaacctctttgagttctgacaacaccgcatcccacatctattgctttggcccacactctaggagaaataggaggggacttacttcagttgggcctaccgaggaaaggacactgtggcagattcaggccatgaggcagcaccatccctcagacctacctggaggtgtcagtggtggggaaagatgcaggatggagttgaaacaagcaccagtggggaaatcacacagagggcctgggattctggagtaaggccatgccatccacagcagagccatatgcccctgttagaagcaacttttggcatgttactgaccctgataag--agaatacttgccataggacatcaaac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29084612 1490 -  71996105 ccaggaggaaggaccctggaacctcatggcaagtatatgctggaacaattccttctgtctttctgccaaggagtctacggccatttactcgggggactgtacactgggaaagggaaacaggcagaatttgggggagtattgacactgggtgtgagctgatattgatgcctataggcctacagcaccatcatgtccccatcacagtgggactcacagaagccaggaataaacctggacacatcacagtggaaccaccaggtccacagacccagccctg-tttatctccccattccccaagtgtttaattggtattgatgcactggcagctagattaacccccacactgggtcccaagtctctgtaacaagggctctcattgtctgaaagccaaagggaaatctctgcaactgatttcatcctggccaaataaaaaatgatattgagtcccagggtgggtcttataaaaggtaccgtagttattgtaggtgtagcacctccattagagagctgaaggatgaggggtggtgttggggttgcctattatcttcatgtgatccagcaatctgtccccaaagaagcctgatggggcctaaagaatgaatgggattacttcagacttgacagagtaggagtcataattgcagctgccatgctggctggatatcactggtagagcagattgataaggcctcaggcacacagtgtgcagctgtggatttggtcagtgccttcctttccactccaatgagaaaaactatacatgaagtgattcatgtgggatccacaacatgtttctttatagttgacctcagggttattgtcactgacctgccctctatagtagagtcttcagagatctgaagaactcggcatcctatagaatagtaaatcagctcatttcatcaacaacgtcatgttgactaggatggatgagtaggaggtggaaagtacgctgaaggccttggcaaataatgtgctcttcagaagacggaagataaaccatacagagattcaggagtggccactgtggtgaagttttattcgtctggtggtcgaggacatccaggagtttctcctccagagtaaaagacaaactgttgcatcttgcatcctcacgacaaagaaggaagcacactgcctggtgaacctctttgagttctgacaacaccgcatcccacatctattgatttggcccatactctaggagaaataggaggggacttacttcaattgggcctaccaaggaaaggacactgtgacagattcaggccatgaggcagcaccatccctcagacccacttggaggtgtcagtggtggggaaagatgcaggatggagctgaaacaagcaccagtgggaaagtcacacagagggcctgggactctggagtaaggTCGTGCCATCCACAGCAGAGCCATATGCCCCTGTTAGAAGCAACTTTTGGCATGTTACTGGCCCTGATAAG--AGAATACTTGCCATAGGACATCAAAC
i chlSab2.chr17            C 0 I 368
s manLeu1.NW_012101411v1      20833 1484 +    119286 CCAGGAGGAAGGACCCTGGAACCTCATGGCAAGTATATGctggaacaattccttctgtctttctgccaaggagtctacggccatttactcgggggactgtacactgggaaagggaaacaggcagaatttgggggagtattgacactgggtgtgagctgatattgatgcctataggtctacagcaccatcatgtccccatcacagtgggacttacagaagccgggaataaacctggacacatcacagtggaaccactgggtccacagacccagccctgttttatctccccattccccaagtgtttaattggtattgatgcactggcagctagagtaacccccacactgggtcccaagtctctggaataagggctctcattgtctgaaagccaaagggaaatctctgcaactgacttcatcctggccaaataaaaaatgatattgagtcccagggtgggtcttatgaaaggtactgtagttattataggtgtagcacctccattagagagctgaaggatgaggggtggtgttggggttgcctattattttcatgtgacccagcaatctgtccccaaagaagcctgatggggcctaaagaatgaatgggattacttcagacttgacagagtaggagtcataattgcagctgccatgctggctggatatcactggtagagcagattgataaggcctcaggcatacagtatgcagctgtggatttggtcagtgcattcctttccactccaatgagaaaaactctacatgaagtgattcatgtgggatccacaacatgtttctttacagttgacctcagggttattgtcactgacctgccctctatagt--agtcttcagagatctgaagaacccggcatcctatagaatagtaaatcagctcatttcatcaaca---tcatgttgattaggatggatgagtaggaggtggaaagtatgctgaaggccttggcaaataacgtgctcttcagaagatggaagataaaccatacagagattcaggagtggccactgcagtgaagttttattcgtccggtggtcgaggacatccaggagtttctcctccagagtaaaagacaaactgttgcatcttgcatcctcatgacaaagaaggaagcacactgcctggtgaacctctttgagttctgacaacaccgcatctcacatctattgctttggcccacactctaggagaaataggaggggacttacttcagttgggcctactgaggaaaggacac--tggcagattcaggccatgaggcagcaccatccctcagacccacctggaggtgtcagtggtggggaaagatgcaggatggagttgaaacaagcaccagtggggaaatcacacagagggcctgggattctggagtaaggccgtgccatccacagcagagccatatgcccctgttagaagtaacttttggcatgttactggccctgataag--agaatacttgccatgggacatcaaac
i manLeu1.NW_012101411v1   I 4 C 0
s colAng1.NW_012115566v1    2737236 1487 -   3067355 ccaggaggaaggaccctggaatctcatggcaagtatatgctggaacaattccttctgtctttctgccaaggagtctacggccatttactcgggggactacacactaggaaagggaaacaagcagaatctgggggagcattgacactgggtatgagctgatattgatgcctataggcctacagcaccatcatgtccccatcacagtgggacttacagaagccgggaataaacctggacacatcacagtggaaccaccaggtccacagacccagccctg-tttatctccccattccccaagtgtttaattggcattgatgcactggcagctagagtaa-ccccacactgggtcccaagtctctggaataagggctctcattgtctgaaagccaaagggaaatctctgcaactgacttcatcctggccaaataaaaaatgatattgagtcccagggtgggtctt-tgaaaggtactgtaggtattgtaggtgtagcactgccattagagagctgaaggacgaggggtggtgttggggttgcctattatcttcatgtgacccagcaatctgtccccaaagaagcctgatggggcctaaagagtgaatgggattacttcagacttgacagagtaggcgtcataattgcagctgccatgctggctgggtatcactggtagagcagattgataaggcctcaggcacacagtgtgcagttgtggatttggtcagtgcgttcctttccactccagtgagaaaaactatacatgaattgattcatgtgggatccacaacatgtttctttatagttgacctcagggttattgtcactgacctgacctctatagtagagtcttcagagatctgaagaacccggcatcctatagaatagtaaatcagctcatttcatcaacaacatcatgttgactaggatggatgagtaggaggtagaaagtatgctgaaggccttggcaaataacgtgctcttcagaagatgcaagataaaccatacagagattcaggagtggcccctgcagtgaagttttattcgtccggtggttgaggacatccaggagtttcttctccagagtaaaagacaaactgttgcatcttgcatcctcacgacaaagaaggaagcacactgcctggtgaaactctttgagttctgacaacaccacatcccacatctattgctttggcccatactctaggagaaataggaagggacttacttcaattgggcctaccgagaaaaggacactgtggcagattcaggccatgaggcagcaccatccctcagacccacctggaggtgtcagtggtggggaaagatgcaggatggagctgaaacaagcaccagtggggaagtcacacagagggactgggattctggagtaagtctgtgccatccacagcagagacataagaccctgttagaagcaactttt-gcatgttactggccctgataag--agaatacttgccatgggacatcaaac
i colAng1.NW_012115566v1   C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     320428 70291 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=10634012.000000
s hg38.chr6_GL000254v2_alt   978660 1893 +   4827813 aaccatgtgatttcaaatgcccatatgaattggcttctgtaactcagaaagtcatagatcggacagaccccaaagcatccatcatgagatagaaatggtccatctggattgagcatgaatcctatgttgacacctccagaaaacatccaaacctgaagtggcactaaacaaccaagcagacaaattgaagttagccagccctcaccatc-----gggcagcccaggcctagcaggatgggttcatgaatgga------gcaagcacagtggcagggatgaggctaaatatgggtccagaagcactgactaccacctaccaagacagatccagctgctgccacctctgaatgtccaac-----------tcattagcatttgaggccaatgatatgcctcagtggggctatatttctttaggtgactaaagcaacactcgctgctaagtgattag---------ttgagccacttccattctggaagggccagaggttcatctttacagggttaggcaccattccatgagtgggttttcctgtcctgctctcagaccctcagtcagcaccactctccagggactgttgacattcctgattcacaggcatggcattgctcttagcacactgtcttcctggcggaacccacttgacagggaagcaggtgcagcattttcatggccatgggatccactggttctatcaccatctgcaccacccagggtctgccagccactaagaatgctggacaggtcttctacaggcacaactcagtgccagcctggaggaagcactctgaggagtgggtgctgtctttcaggacatggtgcatttattaaatcagagacatctctacagtgccgtgttctcagtaggaagaacatgtgggtccagaaactaaggagtgaaagtgggtatggctccatgtctcattccttagattcacctgctgtgggattttgcacttctcatctcccaaacctgtgctctgcagggtagaaggtcctggattctaaaggaaggtactcttaaatcaggacaaatgagagcctactgaagaacacattactattgcccccagagagatttggacagtatgtgcccagagaccagcaagtgaggagtcccctcctctccaggcacaggtaatagatcctaatctccaggaggaggttgggctgctgt--cacaatgagggcaggaggaatgtgtgtggaacccagtgatccactt--gaggggtctcctggttccccttgtcccattgtaagtgttagtggaattgtccagcaaccaatcctgagggaatttgatttccaagggcccagaaacctcaggaaggaaaatttgaaccatgctcccagataaTCTcccaaggccctgctcctgtgctctgacatcctcagcagcattggtgcagacaccctgctttccatgggctgttcccaaccagtgatgggtgacaagagggacactaagggaggcccatgtctggaagacaagggccaactgtgacgagaggactcctctatggccttgctcaactctccttagattgcctatggtctagga-----tgtgtccaacaaa----cctcctctc---ctgtccctcacttgggggtcacgcttgcatctcagtctgctgtctctcccaaggtttcctggatcttttcccatattttctggcaggtgagtcctctaataaaatactgcaactttaatctcatgtcatctgcttcttggagaacatggaccaacaAAATCATTTCCATTTACACACCAGTGACCTCTTACTT-TTCCAGTTTGTAAAATCCTTTTTTTTATCCAACTTCTTCCACCT------GCCCCAGTTTTGCTAGTATTTGTGTTGTTTTCTTtgagtaaattgatgttcactgttttaagtcactaagtcttggggtagtttgttacacagcaacag
s panTro5.chr6             29941394 1892 + 175400573 aaccatgtgatttcaaatgcccatatgaattgtcttctgtaactcagaaagtcatagatcggacagaccccaaagcatccatcatgagatagaaatggtccatctggattgagcCTGAGtcctatgttgacacctccagaaaacatccaaacctgaagtggcactaaacaaccaagcagacaaattgaagttagccagccctcaccatc------agcagcccaggcctggcaggatgggttcatgaatgga------gcaagcacagtggcagggatgaggctaaatatgggtccagaagcactgactaccacctaccaagacagatccagctgctgccacctctgaatgtccaac-----------tcattagcatttgaggccaatgatgtgcctcagtggggctatatttctttaggtgactaaagcaacactcgctgctaagtgattag---------ttgagccacttccattctggaagggccagaggttcatctttacagagttaggcaccattccatgagtgggttttcctgtcctgctctcagaccctcagtcagcatcactctccagggactcttgacattcctgattcacaggcatggcattgctcttagcacactgtcttcctggcggaacccacttgacagggaagcaggtgcagcattttcatggccatgggatccactggttctatcaccatctgcaccacccagggtctgccagccactaagaatgctggacaggtcttctacaggcacaactcagtgccagcctggaggaagcactctgaggggtgggtgctgtctttcaggacatagtgcatttattaaatcagagacgtctctacagtgccgtgttctcagtaggaagaacatgtgggtccagaaactaaggagtgaaagtgggtatggctccatgtctcattccttagattcacctgctgtgggattttgcacttctcatctcccaaacctgtgctctgcagggtagaaggtcctggattctaaagaaaggtactcttaagtcaggacaaatgagagcctactgaagaacacattactattgcccccagaaagatttggacagtatgtgcccagagaccagcaagtgaggagtcccctcctctccaggcacaggtaatagatcctaatctccaggaggaggttgggctgctgt--cacaatgagggcaggaggaatgtgtgtggaacccagtgatccactt--gagggggctcctggttccccttgtcccactgtaagtgttagtggaattgtccagcaaccaagcctgagagaatttgatttccaagggcccagaaacctcaggaaggaagatttgaaccatgctcccagataaTCTcccaaggccctgctcctgtgctctgacatcctcagcagcattggtgcagacaccctgcttcccatgggctgttcccaaccagtgatgggtgacaagagggacactaagggaggcctatgtctggaagacaagggccaactgtggctagaggactcctctgtgaccttgctcaactctccttagattgcctatggtctagga-----tgtgtccaacaaa----cctcctctc---ctgtccctcacttgggggtcacgcttgcatctcagtctgctgcctctcccagggtttcctggatcttttcccatattttctggcaggtgagtcctctaataaaatactgcaactttaatctcatgtcatctgcttcttggaaaacatggaccaacaAAATCATTTCCATTTACACACCAGTGACCTCTTACTT-TTCCAGTTTGTAAAATCCTTTTGTTTATCCAACTTCTTCCACCT------GCTCCAGTTTTGCTGGTATTTGTATTGTTTTctttgagtaaattgatgttcactgttttaagtcactaagtcttggggtagtttgttacacagcaacag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30175006 1880 + 173848474 -------------caaatgcccatatgaattggcttctgtaactcagaaagtcatagatcggacagaccccaaagcatccatcatgagatagaaatggtccatctggattgagcCtgaatcctatgttgacacctccagaaaacatccaaacctgaagtggcactaaacaaccaagcagacaaattgaagttagccagccctcaccatc-----gggcagcccaggcctggcaggatgggttcatgaatgga------gcaagcacagtggcagggatgaggctaaatatgggtccagaagcattgactaccacctaccaagacagatccagctgctgccacctctgaatgtccaac-----------tcattagcacttgaggccaatgatgtgcctcagtggggctatatttctttaggtgactaaagcaacactcgctgctaagtgattag---------ttgagccacttccattctggaagggccagaggttcatctttacagggttaggcaccattccatgagtgggttttcctgtcctgctctcagaccctcagtcagcaccactctccagggactgttgacattcctgattcacaggcatggcattgctcttagcacactgtcttcctggtggaacccacttgacagggaagcaggtgcagcattttcatggccatgggatccactggttctatcaccatctgcaccacccagggtctgccagccactaagaatgctggacaggtcttctacaggcacaactcagtgccagcctggaggaagcactctgagggttgggtgctgtctttcaggacatggtgcatttattaaatcagagacgtctctacagtgccgtgttctcagtaggaagaacatgtggttccagaaactaaggagtgaaagtgggtatggctccatgtctcattccttagattcacctgctgtgggattttgcacttctcatctcccaaacctgtgctctgcagggtagaaggtcctggattctaaaggaaggtactcttaagtcaggacaaatgagagcctactgaagaacacattactattgcccccagagagatttggacagtatgtgcccagagaccagcaagtgaggagtcccctcctctccaggcacaggtaatagatcctaatctccaggaggaggttgggctgctgt--cacaatgagggcaggaggaatgtgtgtggaacccagtgatccactt--gagggggctcctggttccccttgtcccattgtaagtgttagtggaattgtccagcaaccaagcctgagagaatttgatttccaagggcccagaaacctcaggaaggaagatttgaaccatgctcccagataaTCTcccaaggccctgctcctgtgctctgacatcctcagcagcattggtgcagacaccctgctttccatgggctgttcccaaccaatgatgggtgacaagagggacactaagggaggcctatgtctggaagacaagggccaactgtggctagaggactcctctgtgaccttgctcaactctccttagattgcctttggtctagga-----tgtgtccaacaaa----cctcctctc---ctgtccctcacttgggggtcacgcttgcatctcagtctgctgcctctcccagggtttcctggatcttttcccatattttctggcaggtgagtcctctaataaaatactgcaactttaatctcatgtcatctgcttcttggagaacatggaccaacaAAATCATTTCCATTTACACACCAGTGACCTCTTACTT-TTCCAGTTTGTAAAATCCTTTTGTTTATCCAACTTCTTCCACCT------GCTCCAGTTTTGCTGGTATTTGTATTGTTTTCTTtgagtaaattgatgttcactgttttaagtcactaagtcttggggtagtttgttacacagcaacag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5975333 1898 +   6154872 aaccatgtgatttcaaatgcccgtatgaattggcttctgtaactcagaaagtcatagatcggacagactccaaagcatccatcatgagatagaaatggtccatctggattgagcatgaatcctatgttgacacctccagaaaacatccaaacctgaagtggcactaaacaaccaagcagacaaattgaagttagccagccctcaccatg-----gggcagcccaggcctggcaggatgggttcatgaatggagcaagcgcaagcacagtggcagggatgaggctaaatatgggtccagaagcactgactaccacctaccaagacagatccagctgctgcctcctctgaatgtccaac-----------tcattagcatttgaggccaatgatgtgcctcagtggggctatatttctttaggtgactaaagcaacactcactgctaagtgattag---------ttgagccacttccattctggaagggccagaggttcatctttacagggttaggcaccattccatgagtgggttttcctgtcctgctctcagaccctcagtcagcaccactctccagggactgttgacattcctgattcacaggcatggcattgctcttagcacactgtcttcctggcggaacccacttgacagggaagcaggtgcagcattttcatggccatgggatccactggttctatcaccatctgcaccacccagggtctgccagccactaagaatgctggacaggtcttctacaggcacaactcagtgccagcctggaggaagcactctgaggggtgggtgctgtctttcaggatatggtgcatttattaaatcagagacatctctacagtgctgtgttctcagtaggaagaacatgtgggtccagaaactaaggagtgaaagtgggtatggctccatgtctcattccttagattcacctgctgtgagattttgcacttctcatctcccaaacctgtgctccgcagggtagaaggtcctggattctaaaggaaggtactcttaaatcaggacaaatgagagcctactgaagaacacattactattgcccccagagagatttggacagtatgtgcccagagaccagcaagtgaggagtcccctcctctccaggcacaggtaatagatcctaatccccaggaggaggttgggctgctgt--cacaatgagggcaggaggaatgtgtgtggaacccagtgatccactt--gaggggtctcctggttccccttgtcccattgtaagtgttagtggaattgtccagcaaccaagcctcagagaatttgatttccaagggcccagaaacctcaggaaggaagatttgaactatgctcccagataaTCTcccaaggccctgctcctgtgctctgacatcctcagcagcattggtgcagacaccctgcttcccatgggctgttcccaaccagtgatgggtgacaagagggacactaagggaggcctatgtctggaagacaagggccaactgtggctagaggactcctctatggccttgctcaactctccttagattgcctgtggtctagga-----tgtgtccaacaaa----cctcctctc---ctgtccctcacttgggggtcacgcttgcatctcagtctgctgcctctcccagggtttcctggatcttttcccatattttctggcaggcgagtcctctaataaaatactgcaactttaatctcatatcatctgcttcttggagaacatggaccaacaAAATCATTTCCATTTAT-CACCAGTGACCTCTTACTT-TTCCAGTTTGTAAAATCCTTTTGTTTATCCAACTTCTTCCACCT------GCTCCAGTTTTGCTGATATTTGTATTGTTTTctttgagtaaattgatgttcactgttttaagtcactaagtcttagggtagtttgttacacagcaacag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74680800 1898 + 122973662 aaccatgtaatttcaaatgcccgtacgaattagcttctgtaactcaggaagtcatagatcagtcagaccccaaagcatccatcatgagatggaaatggtccatctggattgagcatgaatcctatgttgacacccccagaaaacatccaaacctgaagtggcactaaacaaccaagcacacaaattgaagttagccagccctcaccatg-----gggcagcccaggcctggcaggatgggttcatgaatgga------gcaagcacagtggcagggatgaggctaaatatgggtccagaagcactgactaccacctaccaagacagatccagctgctgccacctctgaatgtccaac-----------tcattagcgtttgaggccaatgatgtgcctcagtggggctatatttctttaggtggctaaagcagcactcgctgctaagtgatgag---------ttgagccacttccatcctggaagggccagaggttcatcttcacagggttaggcacaattccatgagtgggttttcctgtcctgctctcagaccctcagtcagcaccactctccagggactgttgacattcctgattcacaggcttggcatggttctcagcacactctcttcctgggggaacccacttgacagggaagcaggtgcagcattttcatggccgtgggatccactggttctatcactatctgcaccacctagggtctgccagccactaagagtgctggacaggtcttccgcaggcacaactcagtgccagcgtggaggaagcactctgaggggtgggtgctgtctttcaggacatggtgcatttattaaatcagagatatctctgcagtgctgtgttctcagtaggaagaacatgtgggtcaagaaactaaggagtggaagtgggtatggctccatgtctcattccttagattcacctgctgtgagattttgcacttctcatctcccaaatatgtgctctgcagggtagaaggtcctggattctaaaggaaggtacttttaaatcaggacaaatgagagcccactgaacaacacattactattgtccccagagagatctggacagtatgtgcccagagaccagcaagtgaggagtcccctcctctccaggcacaggtaatagatcctaatctccaggacgaggttgggctgctgtcacacaatgagggtaagaggaatgtgtgtggaa-ccagtgatccactt--ggggtgtctcctggttccccttgttccattgtaagtgttagtggaattgtccagcaaccaagcctgagagaatttgatttccaagagcctagaaacctcaggaaggaaggtttgagccatgctcccagataaTCTcccaaggccctgctcctgtgctctgatatcctcagcagcattggtgcagacgccctgcttcccatgggctgttcccaaccagtgatgggtgacaagagggacacaaagagaggcccatgtctggaagacaagggccaactgtggctagaggactcctccatggccttggtcaactctccttagattgcctgtggtctagga-----tgtgtccaacaaaacctcctctcctt---ctgtccctcacttgggggtcatgcttgcatctcagtctgctgcctctcctagggtttcctggatcttttcccatattgtctggcaggtgcgtcctctaataaaacactgcaactttaatctcatgtcatctgcttcttggagaacatggaccaacaAAATCATTTCCACTTACACACCGTTGACCTCTTACTTATTCCAATTTGTAAAATCCTTTTGTTTATCCAACTTCTTCCACCT------GCTCCAGTTTTGCTGGTATTTGTATTGTTTTctttaagtcaattgatgttcattgttttaagtcactaactctt-gggtagtttgttacacagcaatag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30169321 1901 + 172585720 aaccatgtgatttcaaatgcccatatgagttggcttctgtaactcaggaagtcatagattggacagaccccaaagcattcatcatgagatggaaatggtccatctgggttgagcatgaatcctatgttgacacctccagaaaatacccgaacctgaagtggcactaaacaaccaagcagacaaattgaagttagccagccctcagcatgggtcaggtcagcccaggcctggcagaatcggtgcatcagtgga------gcaaccacagcggcagggatgaggctaaatatgggtccagaagcactgactgccaccttccaagacagatacagctgctgccacctctgaatgtccaac-----------tcattagcatttgaggccaatgatgtgcctcagtggggctacatttctttaggtgacta-------actcgctgataagtgatgagttgactacattgagccacttccatcctggaagggccagaggttcatcttcacagggttaggcaccattccatgagtgggttttcctgtcctgctctcagaccctcagtcagcaccattctctggggactgttgatgttcctgatccacaggcttgacattgctcttagcacactgtcttcctgggggaacccacttgacaaggaagtaggtgcagcattttcacggccgtgggatccactggttctatcatcatctgtaccaccaagggtctgccagccacaaagaatgccggacaggtcttctacaggcacaactcagtgccagtctggaggaagcactttgagggctgggtgctgtctttcaggacatggtgcatttattaaatcagagacatgtctacagtgctgtgttctcagtaggaagaacatgtgggtcaagaaaccaaggagtggaagtgagtatggctccatgtctcattccttagattcacctgctgtgggattttgcacttctcatctcccaaacctgtgctctgcagggtagaaggtcctggattctaaaggagggtactcttcaatcaggacaaatgagagcccactgaacagcacattactattgcccgcagggagatttggacagtatgtgcccagagactagcaagtgaggagtcccctcctctccaggcacaggtaatagatcctaatctccaggaggaggttgggctgctgtcacacaatgagggcaggaggaatgtgtgtggaacccagtgatccacttgtggggggtatcctggtt---------caattttaattgttagtggaattgtccagctaccaagcctgagggaatttgatttccaagggcccagaaacctcaggaagg---gtttgagccatgctcccagataaTCTcccaaggccctgctcctgtgctctgacatcctcagcagcattggtacagatgccctgcttcccacgggctgttcccaaccagtgatgggtaacaagagggacactaagggagacccatttctggaagacaagggccaactgtggctagaggactcctccatggccttgctcaactctccttagattgcctgtgatctagga-----tgtgtccaacaaa----cttcctctccttctgtccttcacttgggggtcacacttgcatctcagtctgctgcctttcccagggtttcctggatcttttctcatattgtctggcaggtgtgtcctctaataaaatactgcaactttaacctcatgtcatctgcttcttggagaatatggaccaac-aAATCATTTCAATTTACACAACAGTGACCTCTTACTTATTCCAGTGTGTAAAATCCTTTTGTTTATCCAACTTCTTCCACCTGCAGTGGCTCCAGTTTTGCTGGTATTTGTATTGTTTTctttgagtcaatcgatgttcattgtttcaagtcattaagtctttgggtagtttgttacacagcaacag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29832781 1901 - 170955103 aaccatgtgatttcaaatgcccatatgagttggcttctgtaactcaggaagtcatagattggacagaccccaaagcattcatcatgagatggaaatggtccatctgggttgagcatgaatcctatgttgacacctccagaaaatacccgaacctgaagtggcactaaacaaccaagcagacaaattgaagttagccagccctcagcatgggtcaggtcagcccaggcctggcagaatcggtgcatcagtgga------gcaaccacagcggcagggatgaggctaaatatgggtccagaagcactgactgccaccttccaagacagatccagctgctgccacctctgaatgtccaac-----------tcattagcatttgaggccaatgatgtgcctcagtggggctacatttctttaggtgacta-------actcgctgataagtgatgagttgactacattgagccacttccatcctggaagggccagaggttcatcttcacagggttaggcaccattccatgagtgggttttcctgtcctgctctcagaccctcagtcagcaccattctctggggactgttgatgttcctgatccacaggcttgacattgctcttagcacactgtcttcctgggggaacccacttgacaaggaagtaggtgcagcattttcacggccgtgggatccactggttctatcatcatctgtaccaccaagggtctgccagccacaaagaatgccggacaggtcttctacaggcacaactcagtgccagtctggaggaagcactttgagggctgggtgctgtctttcaggacatggtgcatttattaaatcagagacatgtctacagtgctgtgttctcagtaggaagaacatgtgggtcaagaaaccaaggagtggaagtgagtatggctccatgtctcattccttagattcacctgctgtgggattttgcacttctcatctcccaaacctgtgctctgcagggtagaaggtcctggattctaaaggagggtactcttcaatcaggacaaatgagagcccactgaacagcacattactattgcccgcagggagatttggacagtatgtgcccagagactagcaagtgaggagtcccctcctctccaggcacaggtaatagatcctaatctccaggaggaggttgggctgctgtcacacaatgagggcaggaggaatgtgtgtggaacccagtgatccacttgtggggggtatcctggtt---------caattttaattgttagtggaattgtccagctaccaagcctgagggaatttgatttccaagggcccagaaacctcaggaagg---gtttgagccatgctcccagataaTCTcccaaggccctgctcctgtgctctgacatcctcagcagcattggtacagatgccctgcttcccacgggctgttcccaaccagtgatgggtaacaagagggacactaagggagacccatttctggaagacaagggccaactgtggctagaggactcctccatggccttgctcaactctccttagattgcctgtgatctagga-----tgtgtccaacaaa----cttcctctccttctgtccttcacttgggggtcacacttgcatctcagtctgctgcctttcccagggtttcctggatcttttctcatattgtctggcaggtgtgtcctctaataaaatactgcaactttaacctcatgtcatctgcttcttggagaatatggaccaac-aAATCATTTCAATTTACACAACAGTGACCTCTTACTTATTCCAGTGTGTAAAATCCTTTTGTTTATCCAACTTCTTCCACCTGCAGTGGCTCCAGTTTTGCTGGTATTTGTATTGTTTTctttgagtcaatcgatgttcattgtttcaagtcattaagtctttgggtagtttgttacacagcaacag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2882062 1901 -   2996164 aaccatgtgatttcaaatgcccatatgagttggcttctgtaactcaggaagtcatagattggacagaccccaaagcattcatcatgagatggaaatggtccatctgggttgagcatgaatcctatgttgacacctccagaaaatacccgaacctgaagtggcactaaataaccaagcagacaaattgaagttagccagccctcagcatgggtcaggtcagcccaggcctggcagaattggtgcatcagtgga------gcaaccacagcggcagggatgaggctaaatatgggtccagaagcactgactgccaccttccaagacagatccagctgctgccacctctgaatgtccaac-----------tcattagcatttgaggccaatgatgtgcctcattggggctacatttctttaggtgacta-------actcactgataagtgatgagttgattaccttgagccacttccatcctggaagggccagaggttcatcttcacagggttaggcaccattccatgagtgggttttcctgtcctgctctcagaccctcagtcagcaccattctctggggactgttggcgttcctgatccacaggcttgacattgctcttagcacactgtcttcctgggggaacccacttgacaaggaagtaggtgcagcattttcacggccgtgggatccactggttctatcatcatctgtaccaccaagggtctgccagccacaaagaatgccggacaggtcttctacaggcacaactcagtgccagtctggaggaagcactgtgagggctgggtgctgtctttcaggacatggtgcatttattaaatcagagacatgtctacagtgctgtgttctcagtaggaagaacatgtgggtcaagaaaccaaggagtggaagtgagtatggctccatgtctcattccttagattcacctgctgtgggattttgcacttctcatctcccaaacctgtgctctgcagggtagaaggtcctggattctaaaggagggtactcttcaatcaggacaaatgagagcccactgaacagcacattactattttccgcagggagatttggacagtatgtgcccagagactagcaagtgaggagtcccctcctctccaggcacaggtaatagatcctaatctccaggaggaggttgggctgctgtcacacaatgagggcaggaggaatgtgtgtggaacccagtgatccacttgtggggggtatcctggtt---------caattttaattgttagtggaattgtccagcaaccaagcctgagggaatttgatttccaagggcccagaaacctcaggaagg---gtttgagccatgttgccagataaTCTcccaaggccctgctcctgtgctctgacatcctcagcagcattggtgcagatgccctgcttcccacgggctgttgccaaccagtgatgggtaacaagaggaacactaagggagacccatttctggaagacaagggccaactgtggctagaggactcctccatggccttgctcaactctccttagattgcctgtgatctagga-----tgtgtccaacaaa----cctcctctccttctgtccctcacttgggggtcacacttgcatctcagtctgctgcctttcccagggtttcctggatcttttctcatattgtctggcaggtgtgtcctctaataaaatactgcaactttaacctcatgtcatctgcttcttggagaatatggaccaac-aAATCATTTCAATTTACACAACAGTGACCTCTTACTTATTCCAGTGTGTAAAATCCTTTTGTTTATCCAACTTCTTCCACCTGCAGTGGCTCCAGTTTTGCTGCTATTTGTATTGTTTTctttgagtcaatcgatgttcattgtttcaagtcattaagtctttgggtagtttgttacacagcaacag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     630211 1891 +    766320 aaccatgtgatttcaaatgcccatatgaattggcttctgtaacttaggaagtcatagattggacagaccccaaagcattcatcataaaatggaaatagtccatctggattgagcatgaatcctatgttgacacctccagaaaacacccgaacctgaagtggcactaaacaaccaagcagacaagttgaagttagccagccctcagcatg-----ggtcagcccaggcctggcagaatcggtgcatcagtgga------gcaaccacagtggcagggatgaggctaaatatgggtccagaagcactaactgccatcttccaagacagatccagctgctgccacctctgaatgtccaac-----------tcattagcatttgaggccaatgatgtgcctcagtggggctacatttccttaggtgacta-------actcgctgataagtgatgagttgactacattgagccacttccatcctggaagggccggaggttcatcttcacagggttaggcaccattccatgagtgggttttcctgtcctgctctca----ctcagtcagcaccattctctggggactgttgacgttcctgatccacaagcttgacactgctcttagcacattgtcttcctgggggaatccacttgacagggaagtaggtgcagcattttcacggccatgggatctactggttctatcatcatctgtaccaccaagggtctgccagccacaaagaatgccagacaggtcttctacaggcacaactcagtgctagtctggaggaagcactctgagggctgggtgctgtctttcaggacatggtgcatttattaaatcagagacatgtctatagtgctgtgttctcagtaggaagaacatgtgggtcaagaaaccaaggagtggaagtgggtatggctccatgtctcatcccttagattcacctgctgtgggattttgcacttctcatctcccaaacctgtgctctgccgggtagaaggtcccggattctaaaggagggtactcttcaatcaggacaaatgagagcccactgaacagcacattactattgcccgcagggagatttggacactatgtgcccagagactagcaagtgaggagtcccctcctctccaggcataggtaatagatcctaatctccaggaggagattgggctgctgtcacacaatgagggcaggaggaatgtgtgtggaacccagtgatccacttg-ggggggtctcctggtt---------caattttaagtgttagtggaattttccagcaaccacgcctgagagaatttgatttccaagggcccagaaacctcaggaagg---gtttgagccatgctcccagataaTCTcccaaggccccgctcctgtgctctgacatcctcagcagcattggtgcagatgccttgcttcccacaggttgttcccaaccagtgatgggtgacaagagggacactaagggagacccatttctggaagacaagggccaactgtggctagaggactcctccatggccttgctcaactctccttagattgcctgtgatctagga-----tgtgtccaacaaa----cctcctctccttctgtccctcacttgggggtcacgcttgcatctcagtctgctgcctttcccagggtttcctggatcttttctcatattgtctggcaggtgtatcctctaataaaatactgcaactttaacctcatgtcatctgcttcttggagaatatggaccaac-aAATCATTTCCATTTACACAACGGTGATCTCTTACTTATTCCAGTTTGTAAAATTCTTTTGTTTATCCAACTTCTTCCACCTGCAGTGGCTCCAGTTTTGCTGGTATTTGTATGGTTTTctttgagtcaattgatgttcattgtttcaagtcattaagtctttgggtagtttgttacacagcaacag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29086470 1889 -  71996105 AACCATGTGATTTCAAATGCCCAtatgaattggcttctgtaactcaggaagtcatagattggacagactccaaagcatccatcatgagatggaaatggtccatctgggttgagcatgaatcctatgttgacacctccagaaaacacccgaacctgaagtggcactaaacaaccaagcagacaaattgaagttagccagccctcagcatg-----ggtcagcccaggcctggcagaattggtgcatcaacaga------acaaccacagtggcagggatgaggctaaatatgggtccagaagcactgattgccaccttccaagacagatccagctgctgccacctctgaatgtccaactcatcatggcttcattagcatttgaagtcaatgatgtgcctcagtgggcgtatatttctttaggtgacta-------actcgctgataagtgatgagttgactacattgagccacttccatcctggaagggccagaggttcatctt----gggtt-----------caccagtggtttttcctgtcctgctctcagaccctcagtcagcaccattctctggggactgttgacattcctgattcacaggcttgacattgctcttagcacactgtcttcctgggggaactcacttgacagggaagtaggtgcagcattttcacagccatgggatccactggttctatcaccatctgcaccacccagggtctgccagccacaaagaatgccggatacgtcttctacaggcacaattcagtgccagtctggaggaagcactctgagggctgggtgctgtctttcaggacatggtgcatttattaaatcagagacatgtctacagtg-tgtgttctcagtaggaagaacatgtgggtcaagaaaccaaggagtggaagtgggtatggctccatgtttcgttccttagattcacctgctgtgggattttacacttctcatctcccaaacctgtgctctgcagggtagaaggtcctggattctaaaggagggtactcttaaatcaggacaaatgagagcccactgaacagcacattactattgcctgcagggagatttggacagtatgtgcccagagactagcaagtgaggagtcccctcctctccaggcacaggtaatagatcctaatctccaggaggaggttgggctgctgtcatacaatgagggcaggaggaatgtgtgtggaacccagtgatccactt--gggtggtctcctggtt---------caattttaagtgttagcggaattgtccagcaacggagcctgagagaatttgatttccaagggcccagaaacctcaggaagc---gtttgagccatgctcccagataaTCTcccaaggccccgctcttgtgctctgacatcctcagcagcattggtgcaaatgccctgcttcccacgggttgttcccaaccagtgatgggtgacaagagggacactaagggagacccatttctggaagacaagggccaactgtggctagaggactcctccatggccttgctcaactctccttagattgcctgtgatctagga-----tgtgtccaacaaa----cctcctctccttctgtccctcacttgggggtcacgcttgcatctcagtctgctgcctttcccagggtttcctggatcttttctcatattgtctggcaggtgtgtcctctaataaaatactgcaactttaacctcatgtcatctgcttcttggagaatatggaccaac-aAATCATTTCCATTTACACAACGGTGACCTCTTACTTATTCCAGTTTGTAAAATCCTTTTGTTTATCCAACTTCTTCCACCTGCAGTGGCTCCAGTTTTGCTGGTATTTGTATTGTTTTctttgagtcaattgatgttcattgtttcaagtcattaagtctttgggtagtttgttacacaacaacag
i chlSab2.chr17            I 368 C 0
s manLeu1.NW_012101411v1      22317 1895 +    119286 aaccatgtgatttcaaatgcccatatgaattggcttctgtaactcaggaagtcatagattggacagaccccaaagcattcatcatgaaatggaaagagtccatctggattgagcatgaatcctatgttgacacctccagaaaacactcgaacctgaagtggcactaaacaaccaagcagacaaattgaagttagccagccctcagcatg-----ggtcagcccaggcctggcagaatcagtgcatcagtgga------gcaaccacagtggcagggatgaggctaaatatgggtccagaagcactaactgccatctttcaagacagatccagctgctgccacctctgaatgtccaac-----------tcattagcatttgaggccaatgatgtgactcagtggggctacatttccttaggtgacta-------actcgctgataagtgatgagttgactacattgagccacttccatcctggaagggccggagggtcatcttcacagggttaggcaccattccatgagtgggttttcctgtcctgctctca----ctcagtcagcaccattctctggggactgttgacgttcctgatccacaggcttgacactgctcttagcacattgtcttcctgggggaatccacttgacagggaagtaggtgcagcattttcacggccgtgggatctactggttctatcatcatctgtaccaccaagggtctgccagccacaaagaatgccagacaggtcttctacaggcacaactcagtgctagtctggaggaagcactctgagggctgggtgctgtctttcaggacatggtgcatttattaaatcagagacatgtctatagtgctgtgttctcagtaggaagaacatgtgggtcaagaaaccaaggagtggaagtgggtatggctccatgtctcatcccttagagtcacaagctgtgggattttgcagttctcatctcccaaacctgtgctctgcagggtagaaggtcctggattctaaaggagggtactcttcaatcaggacaaatgagagcccactgaacaacacattactattgcccgcagggagatttggacactatgtgcccagagactagcaagtgaggagtcccctcctctccaggcacaggtaatagatcctaatctccaggaggagattgggctgctgtcatacaatgagggcaggaggaatgtgtgtggaacccagtgatccactt--ggggggtctcctggtt---------caattttaagtgttagtggaattgtccagcaaccaagcctgagagaatttgatttccaagggcccagaaacctcaggaagg---gtttgagccatgaacccagataaTCTcccaaggccccgctcctgtgctctgacatcctcagcagcattggtgcagatgccttgcttcccacaggttgttcccaaccagtgatgggtgacaagagggacactaagggagacccatttctggaagacaagggccaactgtggctagaggactcctccatggcctagctcaactctccttagattgcctgtgatctaggattgcctgtgtccaacaaa----cctcctctccttctgtccctcacttgggggtcacgcttgcatctcagtctgctgcctttcccagggtttcctggatcttttctcatattgtctggcaggtgtatcctctaataaaatactgcaactttaacctcatgtcatctgcttcttggagaatatggaccaac-aAATCATTTCCATTTACACAACGGTGATCTCTTACTTATTCCAGTTTGTAAAATTCTTTTGTTTATCCAACTTCTTCCACCTGCAGTGGCTCCAGTTTTGCTGGTATTTGTATTGTTTTCTTTGAGTCAATTGatgttcattgtttcaagtcattaagtctttgggtagtttgttacacagcaacag
i manLeu1.NW_012101411v1   C 0 M 405
s colAng1.NW_012115566v1    2738723 1895 -   3067355 aaccatgtgattccaaatgcccatatgaattggcttctgtaactcaggaagtcatagattggacagaccccaaagcattcatcatgagatggaaatggtccatctgggttgagcatgaatcctatgttgacacctccagaaaacacccgaacctgaagtggcactaaacaaccaagcagacaaattgaagttagccagccctcagcatg-----ggtcagcccaggcctggcagaatcggtgcatcagtgga------gcaaccacagtggcagggatgaggctaaatatgggtccagaagcactaactgccaccttccaagacagatccagctgctgccacctctgaatgtccaac-----------tcattagcatttgaggccaatgatgtgcctcagtggggctacatttctttaggtgacta-------gcttgctgataagtgatgagttgactacattgagccacttccatcctggaagggccagaggttcatcttcacagggttaggcaccattccatgagtgggttttcctgttctgctctcagaccctcagtcagtaccattctctggggactgttgacgttcctcatccacaggcttggcattattcttagcacactgtcttcctgggggaacccagttgacagggaagtaagtgcagcattttcacggccatgggatccactggttctatcatcatctgtaccacccagggtctgccagccacaaagaatgccggacaggtcttctacaggcacaactcagtgccagtctggaggaagcactctgagggctgggtgctgtctttcaggacatggtacatttattaaatcagagacatgtctacagtgctgtgctctcagtaggaagaacatgtgggtcaagaaaccaaggagtggaagtgggtatggctccatgtctcattccttagagtcacctgctgtaggattttgcacttctcatctcccaaacctgtgctctgccgggtagaaggtcctggattctaaaggagggtactcttcaatcaggacaaatgagagcccactgaacaacacattactattgcccgcagggagatttggacagtatgtgcccagagactagcaagtgaggagtcccctcctctccaggcacaggtaatagatcctaatctccaggaggagattgggctgctgtcacacaatgagggcaggaggaatgtgtgtggaacccagtgatccacttg-ggggggtctcctggtt---------caattttaagtgttagtggaattgtccagcaaccaagcctgagagaatttgatttccaagggcccagaaacttcaggaagg---gtttgagccatgctcccagataaTCTcccaaggccccgctcctgtgctctgacatcctcagcagcattggtgcagacgccctgcttcccacaggctgttcccaaccagtgatgggtgacaagagggacactaagggagacccatttctggaagacaagggccaactgtggctagaggactcctccatggccttgctcaactctccttagattgcctgtgatctagga-----tgtgtccaacaaa----cctcctctccttctgtccctcacttgggggtcacgcttgcatctcagtctgctgccttttccagggtttcctggatcttttctcatattgtctggcaagtgtgtcctctaataaaatactgcaactttaacgtcatgtcacctgcttcttggagaatatggaccaac-aAATCATTTCCATCTACACAACGGTGATCTCTTACTTATTCCAGTTTGTAAAATCCTTTTGTTTATCCAACTTCTTCCACCTGCAGTGGCTCCAGTTTTGCTGGTATTTGTATTGTTTTctttgagtcaattgatgttcattgtctcaagttattaagtctttgggtagtttgctacacagcaacag
i colAng1.NW_012115566v1   C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     320428 70291 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=313353.000000
s hg38.chr6_GL000254v2_alt   980553 68 +   4827813 atagctaataAACCTCTCTTATGTTTCGATTATTCCATAGTGGTTATCTACATCTGATTTATTTCCTT
s panTro5.chr6             29943286 68 + 175400573 atagctaataAACCTCTCTTATGTTTCGATTATTCCATAGTGGTTATCTACATCTGATTTATTTCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30176886 68 + 173848474 atagctaataAACCTCTCTTATGTTTCGATTATTCCATAGTGGTTATCTACATCTGATTTATTTCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5977231 68 +   6154872 atagctaataAACCTCTCTTATGTTTCGATTATTCCATGGTGGTTATCTACATCTGATTTATTTCCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74682698 68 + 122973662 ataactaataAGCCTCTGTTATGTTTCCATTATTCCGTAGTGGTTATCTACATCTGATTTATTTCCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30171222 68 + 172585720 gtaactaataAACCTCTCTTATGTTTCCATTATTCCATAGTGGTTATCTACATCTGATTAATTTCCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29834682 68 - 170955103 gtaactaataAACCTCTCTTATGTTTCCATTATTCCATAGTGGTTATCTACATCTGATTAATTTCCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2883963 68 -   2996164 gtaactaataAACCTCTTTTATGTTTCCATTATTCCATAGTGGTTATCTACATCTGATTAATTTCCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     632102 68 +    766320 gtaactaataAACCTCTCTTATGTTTCCATTATTCCATAGTGGTTATCTACATCTGATTCATTTCCTT
i cerAty1.NW_012002711v1   C 0 I 304
s chlSab2.chr17            29088359 67 -  71996105 gtaactaataAACCTCTCTTATGTTTCCATT-TTCCTTAGTGGTTATCTACATCTGATTCATTTCCTT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2740618 68 -   3067355 gtaactaataAACCTCTCTTATGTTTCCATTATTCCATAGTGGTTATCTACATCTGATTCATTTCCTT
i colAng1.NW_012115566v1   C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     320428 70291 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I
e manLeu1.NW_012101411v1      24212 405 +    119286 M

a score=4172592.000000
s hg38.chr6_GL000254v2_alt   980621 767 +   4827813 CTATTTTTATAATATTATCCATACATAATGTTTCCCGTTTCTCTCCACCTATTCTCTTCTTGATTTTTCTTTTCCTTCCCACCATTTTTTCCT--ACTTCTCATGAAATATTCCTAACATATAAAATAACCCTATGTGGTTATGATATAAGGAAGCATTTTCTGAATCTGTATGTTAAAAGTTTAATGCCACAGTGTATGGGATACAAGTAAAGAACAGGAAGTTATTAACAGAGTCTGAGTAAAAAGTGCCTGGTGTAATTCTGCGGCCAAGACAGTGACTTTGAACTCTTACaggctgatgcaaaaataattgcagtttttgccattacaataattcttaccaagaactattcacattggaccaaagccaattgtaatgatccatgtgatggagagagccagaatgctatgaaagtggccttgaccagaaataggtcatttgatccttggctcattgacatctccatagatttttggtgtacaatgttcggtctgatgtgcaaggtaattccatcttgcaaaggattcgatgt--tacattctaccacacacacacctgaattaaacttttacagaattggaaatgcacattactgatcaaaataaattaaacaggaaaaaattatataggaataaccagtgatagaatagcaaataggaatggaaaacacaataggattgcttaaaaaatactgtagaagtacagaatagcagtgctatttagaatcatagtgatgtccaaatcatgtctaccacgtctcattaaaaa
s panTro5.chr6             29943354 769 + 175400573 CTATTTTTATAATATTATCCATACATAATGTTTCCCGTTTCTCTCCACCTATTCTCTTCTTGATTTTTCTTTTCCTTCTCACCATTTTTTCCTTCAATTCTCATGAAATATTCCTAACATATAAAATAACCCTATGTGGCTATGATATAAGGAAGCATTTTCTGAATCTGTATGTTAAAAGTTTAATGCCACAGTGTATGGGATACAAGTAAAGAACAGGAAGTTATTAACAGAGTCTGAGTAAAAAGTGCCTGGTGTAATTCTGCAGCCAAGACAGTGACTTTGAACTCTTACaggctgatgcaaaaataattgcggtttttgccattacaataattcttaccaagaactattcacattggaccaaagccaattgtaatgatccatgtgatggagagagccagaatgctatgaaagtggccttgaccagaaataggtcatttgatccttggctcattgacatctccatagattttcggtgtacagtgttcggtctgatgtgcaaggtaattccatcttgcaaaggatttgatgt--tacattttaccacacacacacccgaattaaacttttacagaattggaaatgcacattactgatcaaaataaattaaacaggaaaaaattatataggaataaccagtgatagaatagcaaataggaatggaaaacacaataggattgcttaaaaaatactgtagaagtacagaatagcagtgctatttagaatcatagtgatgtccgaatcatgtctaccacatctcattaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30176954 768 + 173848474 CTATTTTTATAATATTATCCGTACATAATGTTTCCCGTTTCTCTCCACCTATTCTCTTCTTGATTTTTCTTTTCCTTCCCACCATTTTTTTCCT-TCTTCTCATGAAATATTCCTAACATATAAAATAACCCTATGTGGCTATGATATAAGGAAGCATTTTCTGAATCTGTATGTTAAAAGTTTAATGCCACAGTGTATGGGATACAAGTAAAGAACAGGAAGTTATTAACAGAGTCTGAGTAAAAAGTGCCTGGTGTAATTCTGCAGCCAAGACAGTGACTTTGAACTCTTACaggctgatgcaaaaataattgcggtttttgccattacaataatTCTTACCAAGAACTATTCACATTGGACCAAAGCCAATGGTAATGATCCATGTGATGGAGAGAGCCAGAATGCTATGAAAGTGGCCTTGACCAGAAATAGGTCATTTGATCCTTGGCTCATTGACATCTCCATAGATTTTCGGTGTACAGTGTTCGgtctgatgtgcaagggaattccatcttgcaaaggatttgatgt--tacattttaccacacacacacccgaattaaacttttacagaattggaaatgcacattactgatcaaaataaattaaacaggaaaaaattatataggaataaccagtgatagaatagcaaataggaatggaaaacacaataggattgcttaaaaaatactgtagaagtacagaatagcagtgctatttagaatcatagtgatgtccgaatcatgtctaccacatctcattaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5977299 767 +   6154872 CTATTTTTATAATATTATCCATACATAATGTTTCCCGTTTCTCTCCACCTATTCTCTTCTTGATTTTTCTTTTCCTTCCCACCATTTTTTCCT--ACTTCTCATGAAATATTCCTAACATATAAAATAACCCTATGTGGTTATGATATAAGGAAGCATTTTCTGAATGTGTATGTTAAAAGTTTAATGCCACAGTGTATGGGATACAAGTAAAGAACAGGAAGTTATTAACAGAGTCTGAGTAAAAAGTGCCTGGTGTAATTCTGCAGCCAAGACAGTGACTTTGAACTCTTACaggctgatgcaaaaataattgcggtttttgccattacaataattcttaccaagaactattcacattggaccaaagccaattgtaatgatccatgtgatggagagagccagaatgctatgaaagtggccttgaccagaaataggtcatttgatccttggctcattgacatctccatagattttcggtgtacaatgttcggtctgatgtgcaaggtaattccatcttgcaaaggatttgatgt--tacattttaccacacacacacctgaattaaacttttacagaattggaaatgcacattactgatcaaaataaattaaacaggaaaaaattatataggaataaccagtgacagaatagcaaataggaatggaaaacacaataggattgcttaaaaaatactgtagaagtacagaatagcagtgctatttagaatcatagtgatgtccgaatcatgtctaccacatctcattaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74682766 767 + 122973662 TTATTTTTATAATATTATCCATACATAATGTTTCCCGTTTCTTTCCACCTATTCTCTTATTGATTTTTCTTTTCTGTCCCACCATTTTTTCCT--TCTTCTCATGAAATATTCCTAACATATAAAATAACCCTATGTGGTTATGATATAAGGAAGCATTTTCTGAATCTGTATGTTAAAAGTTTAATGCCACAGTGTATGGGATACAAGTAAAGAACAGGAAGTTATTAACAGAGTCTGAGTAAAAACTGCCTGGTGTAATTCTGCAGCCAAGACAGTGACTTTGAACTCTTACaggctgatgcaaaaataattgcagtttttgccattacaagaattcttaccaagaactattcacattggaccaaagccaattgtaatgatccatgtgatggagagaaccagaatgctatgaaagtggccttaaccagaaataggtcatttgatccttggatcattggcatctccATAGATTTTCTGTGTCCAACGTTTGgtctgatgtgcaaagcaattccatcttgcaaaggatttgatgt--tacattttaccacacacacacctgaattaaacttttacagaattggaaatgcacattactgatcaaaataaattaaacaggaaaaaattacataggaataaccagtgatagaacagcaaataggaatggaaaacacaataggattgctttaaaaatactgtagaagtatagaatagcagtgctatttagaatcacagcgatgtccaaatcatgtctaccacatttcattgaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30171290 743 + 172585720 CTATTTTTATAATATTATCCATACATGATGTTTCCCATTTCTCTACACCTATTCTCTTCTTGATTTTTCTCTTCCTTCCCACCACTTTTTCCT--TTTTCTCATGAAATATTCTTAACATATAAAATAACCCTATGTAGTTATGATAT-AGAAAGCATTTTGTGAATCTGTATGTTAAAAGTTTAACGCCACAGTATATAGGATACAAGTAAAGAACAGGAAGTTATTAACAGAGTCTGAGTAAAAAGTGCCTGTTGTAATTCTGCAGTCAAGACAGTGACTT------------------------AATAATTGCAGTTTTTGCcattacaagaattcttagcaagaactattcacattggaccaaagccaattgtaattatccatgtgatggagaggaccagaatgctatgaaagtggccttgactagaaataggtcatttgatccttggctcactggcatctccatagattttcagtgtacaatgttcagtctgatgtgtaaggtaattccatcttgcaaaggatttgatgtgttgcattttaccacacatacacctgaattaaacttttacagaattggaaatgcacattcctgatcaaaataaattaaat-ggaaaagatgatatatgaataaccagtgatagaatagcaaataggaatggaaaacacaatagcattgcttaaaaaatactgtagaagcacagaatagcagtgttatttagaatcatagtgatgcccaaatcatgtctaccacatctcattaaaaa
i rheMac8.chr4             C 0 I 315
s macFas5.chr4             29834750 743 - 170955103 CTATTTTTATAATATTATCCATACATGATGTTTCCCATTTCTCTACACCTATTCTCTTCTTGATTTTTCTCTTCCTTCCCACCACTTTTTCCT--TTTTCTCATGAAATATTCTTAACATATAAAATAACCCTATGTAGTTATGATAT-AGAAAGCATTTTCTGAATCTGTATGTTAAAAGTTTAACGCCACAGTATATAGGATACAAGTAAAGAACAGGAAGTTATTAACAGAGTCTGAGTAAAAAGTGCCTGTTGTAATTCTGCAGTCAAGACAGTGACTT------------------------AATAATTGCAGTTTTTGCcattacaagaattcttagcaagaactattcacattggaccaaagccaattgtaattatccatgtgatggagaggaccagaatgctatgaaagtggccttgactagaaataggtcatttgatccttggctcactggcatctccatagattttcagtgtacaatgttcagtctgatgtgcaaggtaattccatcttgcaaaggatttgatgtgttgcattttaccacacatacacctgaattaaacttttacagaattggaaatgcacattactgatcaaaataaattaaat-ggaaaagatgatatatgaataaccagtgatagaatagcaaataggaatggaaaacacaatagcattgcttaaaaaatactgtagaagcacagaatagcagtgttatttagaatcatagtgatgcccaaatcatgtctaccacatctcattaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2884031 743 -   2996164 CTATTTTTATAATATTATCCATACATGATGTTTCCCATTTCTCTACACCTATTCTCTTCTTGATTTTTCTCTTCCTTCCCACCACTTTTTCCT--TTTTCTCATGAAATATTCTTAACATATAAAATAACCCTATGTAGTTATGATAT-AGAAAGCATTTTCTGAATCTGTATGTTAAAAGTTTAACGCCACAGTATATAGGATACAAGTAAAGAACAGGAAGTTATTAACAGAGTCTGAGTAAAAAGTGCCTGTTGTAATTCTGCAGTCAAGACAGTGACTT------------------------AATAATTGCAGTTTTTGCcattataagaattcttagcaagaactattcacattggaccaaagccaattataattatccatgtgatggagaggaccagaatgctatgaaagtggccttgactagaaataggtcatttgatccttggctcactggcatctccataggttttcagtgtactatgttcagtctgatgtgcaaggtaattccatcttgcaaaggatttgatgtgctgcattttaccacacatacacctgaattaaacttttacagaattggaaatgcacattactgatcaaaataaattaaat-ggaaaagatgatatatgaataaccagtgatagaatagcaaataggaatggaaaacacaatagcattgcttaaaaaatactgtagaagcacagaatagcagtgttatttagaatcatagtgatgcccaaatcatgtctaccacatctcattaaaaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     632474 738 +    766320 cTATTTTTATAATATTATCCATACGTGATGTTTCCCGTTTCTCTACACCTATTCTCTTCTTGATTTTTATCTTCCTTCCCACCACTTTTTCCT--TTTTCTCATGAAATATTCCTAACATGTAAAATAACCCTATGTAGTTATGATAT-AGAAAGCATTTTCTGCATCTGTATGTTAAAAGTTTAATGCCACAGTATATGGGATACAAGTACAGAACAGGAAGTTATTAACAGACTCTGAGTAAAAAGTGCCTGTTGTAATTCTGCAGTCAAGACAGTGACTT------------------------AATAATTGCAGTTTTTGCcattacaagaattcttaacaagaactattcacattggaccaaa-ccaattg----tatccatgtgatggagaggaccagaatgctatgaaagcggccttgactagaaataggtcatttgatccttggctcactggcatctccatagattttcagtgtacaatgttcattctgatgtgcaaggtaattccatcttgcaaaggatttgatgtgttgcattgtatcacacatacacctgaattaaacttttacagaattggaaatgcacgttactgatcaaaataaattaaac-ggaaaagattatatatgaataaccagtgacagaatagcaaataggaatggaaaacacaatagcattgcttaaaaaatactgtagaagcacagaatagcagtgttatttagaatcatagtgatgcccaaatcatgtctaccacatctcattaaaaa
i cerAty1.NW_012002711v1   I 304 C 0
s chlSab2.chr17            29088426 743 -  71996105 CTATTTTTATAATATTATCCATACATGATGTTTCCCGTTTCTCTGCACCTATTCTCTTCTTGATTTTTCTCTTCCTTCCCACCACTTTTTCCT--TTTTCTCATGAAATATTCCTAACATATAAAATAACCCTATGTAGTTATGATAT-AGAAAGCATTTTCTGAATCTGTATGTTAAAAGTTTAATGCCACAGTATATGGGATACAAGTAAAGAACAGGAAGTTATTAACAGAGTCTGAGTAAAAAGTGCCTATTGTAATTCTGCAGTCAAGACAGTGACTT------------------------AATAATTGCAGTTTTTGCCATTAAAAGAATTCTTAGCAAGAACTATTCACATTGGACCAAAGCCAATTGTAATTATCCATGTGATGGAGAGGACCAGAATGCTATGAAAGTGGCCTTGACTAGAAAAAGGTCATTTGATCCTTGGCTCACTGGCATCTCCATAGATTTTCAGCGTGCAATGTTCAGTCTGATGTgcaaggtaattccgtcttgcaaaggatttgatgtgttgcattttgccacacatacacctgaattaaactttttcagaattggaaatgcacattactgatcaaaataaattaaac-agaaaagatgatatatgaataaccagtgatagaatagcaaataggaatggaaaacacaatagcattgcttaaaaaatactgtagaagtacagaatagcagtgttatttagaatcatagtgatgcccaaatcatgtctaccacatctcattaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      24628 738 +    119286 CTATTTTTATAATATTATCCATACGTGATGTTTCCCGTTTCTCTACACCTATTCTCTTCTTGATTTTTCTCTTCCTTCCCACCACTTTTTCCT--TTTTCTCATGAAATATTCCTAACATATAAAATAACCCTATGTAGTTATGATAT-AGAAAGCATTTTCTGAATCTGTATGTTAAAAGTTTAATGCCACAGTATATGGGATACAAGTACAGAACAGGAAGTTATTAACAGAGTCTGAGTAAAAAGTGCCTGTTGTAATTCTGCAGTCAAGACAGTGACTT------------------------AATAATTGCAGTTTTTGCcattacaagaattcttaacaagaactattcacattggaccaaa-ccaattg----tatccatgtgatggagaggaccagaatgctatgaaagtggccttgactagaaataggtcatttgatccttggctcactggcatctccatagattttcagtgtacaatgttcattctgatgtgcaaggtaattccatcttgcaaaggatttgatgtgttgcattgtatcacacatacacctgaattaaacttttacagaattggaaatgcacgttactgatcaaaataaattaaac-ggaaaagattatatatgaataaccagtgatagaatagcaaataggaatggaaaacacaatagcattgcttaaaaaatactgtagaagcacagaatagcagtgttatttagaatcatagtgatgcccaaatcatgtctaccacatctcattaaaaa
i manLeu1.NW_012101411v1   M 405 C 0
s colAng1.NW_012115566v1    2740686 742 -   3067355 CTA-TTTTATAATATTATCCATACATGATGTTTCCCGTTTCTCTACACCTATTCTCTTCTTGATTTTTCTCCTCCTTCCCACCACTTTTTCCT--TTTTCTCATGAAATATTCCTAATATATAAAATAACCCTATGTAGTTATGATAT-AGAAAGCATTTTCTGAATCTGTATGTTAAAAGTTTAATGCCACAGTATATGGGATACAAGTAAAGACCAGGAAGTTATTAACAGAGTCTGAGTAAAAAGTGCCTGTTGTAATTCTGCAGTCAAGACAGTGACTT------------------------AATAATTGCAGTTTTTGCTattacaagaattcttagcaagaactattcacattggaccaaatccaattgtaattatccatgtgatggagaggatcagaatgctatgaaagtggccttgactagaaataggtcatttgatccttggctcactggcatctccatagattttcagtgtacagtgttcagtctgatgtgcaaggtaattccatcttgcaaaggatttgatgtgttgcattgtaccacacatacacctgaattaaacttttacagaattggaaatgcacattactgatcaaaataaattaaac-agaaaagattatatatgaataaccagtgatagaacagcaaataggaacggaaaacacaatagcattgcttaaaaagtactgtagaagcacagaatagcagtgttatttagaatcatagtgatgcccaaatcatgtctaccacatctcattaaaaa
i colAng1.NW_012115566v1   C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     320428 70291 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=1647304.000000
s hg38.chr6_GL000254v2_alt   981388 293 +   4827813 ccagagcgaaagatgtcaagtttattatggaatgcccacccagtagccag-tttttggaaaatcttgttcctaagttggagctaagcattttgggctactgtatccaaccaaagttactgacattatgctaagctagatgtgttggctgaggtatgagattcacattttttctaccttaaaagcaatctgatttggcaaatatttttaaagatgatatttgaatgagaaaattggcatttgggacattcttaaactaaatttgagacatcttaggcaaaacaaat--acttatttt
s panTro5.chr6             29944123 293 + 175400573 ccagagcgaaagatgtcaagtttattatggaatgcccacccagtagccag-tttttggaaaatcttgttcctaagttggagctaagcatattgggctactgtatccaaccaaagttactgacatcatgctaagctagatgtgttggctgaggtatgagattcacattttttctatcttaaaagcaatctgatttggcaaatatttttaaagatgatatttgaatgagaaaattggcatttgggacattcttaaactaaatttgagacatcttaggcaaaacaaat--acttatttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30177722 293 + 173848474 ccagagcgaaagacgtcaagtttattatggaatgcccacccagtagccag-tttttggaaaatcttattcctaagttggagctaagcattttgggctactgtatccaaccaaagttactgacatcatgctaagctagatgtgttggctgaggtatgagattcacattttttctaccttaaaagcaatctgatttggcaaatatttttaaagatgatatttgaatgagaaaattggcatttgggacattcttaaactaaatttgagacatctgaggcaaaacaaat--acttatttT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5978066 293 +   6154872 ccagagcgaaagatgtcaagtttattatggaatgcccacccagtagccag-tttttggaaaatcttgttcctaagttggagctaagcattttgggctactgtatccaaccaaagttattgacatcatgctaagctagatgtgttggctgaggtatgagattcacattttttctaccttaaaagcaatctgatttggcaaatatttttaaagatgatatttgaatgagaaaattggcatttgggacattcttaaactaaatttgagacatctgaggcaaaacaaat--acttatttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74683533 293 + 122973662 ccagagcaaaagatgtcaagtttattatggaatgcccacccaacagccag-cttttggaaaatcttgttcctagattggagctaaccattttgggctatggtatccaaccaaagttactgacatcatgctaagctagatgtgttggctgaggtatgagattcacattttttctaccttaaaagcaatctgatttggcaaatattcttaaagatgatatttgaatgagaaaattggcacttgggacattcttaaactaaatttgagacatcttaggcaaagcaaat--acttatttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30172348 292 + 172585720 ccagagcaaaagatatcaagtttattatggaattcccacccaatagccag-tttttgaaaaatctttttcctagattggagctaaccattttgggctactgtatccaaccaaagttactcacatcatgctcagctagatgtgttggctgaggtatgagactcatattttttctatcttaaaagcaatctgattt-gcaaatatttttaaagatgatatttgaatgggaaaattggcattttgggcattcttaaactaaatttgagacatcttaggcaaaacaaat--acttatttt
i rheMac8.chr4             I 315 C 0
s macFas5.chr4             29835493 292 - 170955103 ccagagcaaaagatatcaagtttattatggaattcccacccaatagccag-tttttgaaaaatctttttcctagattggagctaaccattttgggctactgtatccaaccaaagttactcacatcatgctcagctagatgtgttggctgaggtatgagactcatattttttctatcttaaaagcaatctgattt-gcaaatatttttaaagatgatatttgaatgggaaaattggcatttggggcattcttaaactaaatttgagacatcttaggcaaaacaaat--acttatttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2884774 292 -   2996164 ccagagcaaaagatatcaagtttattatggaattcccacccaatagccag-tttttgaaaaatctttttcctagattggagctaaccattttgggctactgtatccaaccaaagttactcacatcatgctcagctagatgtgttggctgaggtatgagattcatattttttctatcttaaaagcaatctgattt-gcaaatatttttaaagatgatatttgaatgggaaaattggcatttggggcattcttaaactaaatttgagacatcttaggcaaaacaaat--acttatttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     633212 293 +    766320 ccagagcaaaagatgtcaagtttattatggaattcccacccaatagccag-tttttgaaaaatcttattcctagattggagctaaccattttgggctactgtatccaaccaaagttactgacatcatgctcagctagatgtgttggctgaggtatgagattcatattttttctatcttaaaagcaatctgattt-gcaaatatttttaaagatgatatttaaatgagaaaattggcatttggggcattcttaaactaaatttgagacatctta-gcaaaacaaataaacttatttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29089169 292 -  71996105 ccagagcaaaagatatcaagtttattatggaattctcacccaatatccag-tttttgaaaaatcttattcctagattggagctaaccattttgggctactgtatccaaccaaagttactgacatcatgctaagctagatgtgttggctgaggtatgagattcatattttttctatcttaaaagcaatctgattt-gcaaatatttttaaagacgatatttgaatgagaaaattggcatttggggcattcttaaactaaatttgagacatcttaggcaaaacaaat--acttatttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      25366 293 +    119286 ccagagcaaaagatgtcaagtttattatggaattcccacccaatagccag-tttttgaaaaatcttattcctagattggagctaaccattgtgggctactgtatccaaccaaagttactgacatcatgctcagctagatgtgttggctgaggtatgagattcatattttttctatcttaaaagcaatctgattt-gcaaatatttttaaagatgatatttgaatgagaaaattggcatttggggcattcttaaactaaatttgagacatctta-gcaaaacaaataaacttatttt
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2741428 293 -   3067355 ccagagcaaaagatagcaagtttattatggaattcccaccgaatagccagttttttgaaaaatcttatccctagattggagctaaccattttgggctactgtatccaaccgaagttactgacatcatgctaagatagatgtgttgactgaggtatgagattcatattttttctatcttaaaagcaatctgattt-gcaaatatttttaaagatgatatttgaatgagaaaattggcatttggggcattcttaaactaaatttgagacatcttaggcaaaacaaat--acttttttt
i colAng1.NW_012115566v1   C 0 I 313
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     320428 70291 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=2461655.000000
s hg38.chr6_GL000254v2_alt   981681 414 +   4827813 taaggcactattgttatggcactgaagtcttggaactatttgatctagttactgtaagttctcagctgtgttgcaactcattaaagagaatattgttattaaaggtatttgcaagaaaaacttagagatactatagtatctcctttctctgtctcaaacttttttcccctcaatacccaaggctctgtgatgtctcaaattttaatcattactttaaaaagagaagtttaaagcattaaagaattataatcagatgaaagcagctttggatttataaaattctgaaacaataattttaattttgcttttaacatatatgcaaattctttgatactctccactttgcagaggtgcaggttcattccctccctgtgagtgtggcctggacttaatgattcacttctatctgatgga---------------------
s panTro5.chr6             29944416 435 + 175400573 taaggcactattgttatggcactgaagtcttggaactatttgatctagttactgtaagttctcaactgtgttgcaactcattaaagagaatattgttattaaaggtatttgcaagaaagacttagagatactatagtatctcctttctctgtctcaaacttttttcccctcaatacccaaggctctgtgatgtctcaaattttaatcattactttaaaaagagaagtttaaagcattaaagaattataatcagatgaaagaagctttggatttataaaattctgaaacaataattttaattttgcttttaacatatatgcaaattctttgacactctccactttccagaggtgcagcttcattccctccctgtgagtgtggcctggacttaatgattcacttctatctgatggagtaatgttgacataacagttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30178015 435 + 173848474 TaaggcactattgttacagcactgaagtcttggaactatttgatctagttactgtaagttctcaactgtgttgcaactcattaaagataatattgttattaaaggtatttgcaagaaaaacttagagatactatggtatctcctttctctgtctcaaacttttTTCCCCTCAATACCCAAGGCTCTGTGAtgtctcaaattttaatcattactttaaaaagagaagtttaaagcattaaagaattataatcagatgaaagcagctttggatttataaaattctgaaacaataattttaattttgcttttaacatatatgcaaattctttgatactctccactttccagaggtgcagcttcattcgctccctgtgagtgtggcctggacttaatgattcacttctatctgatggagtaatggtgacataacagttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5978359 435 +   6154872 taaggcactattgttatggcactgaagtcttggaactatttgacctagttactgtaagttctcaactgtgttgcaactcattaaagagaatattgttattaaaggtatttgcaagaaaaacttagagatactatagtatctcctttctctgtctcaaacttttttcccctcaatacccaaggctctgtgatgtctcaaattttaatcattactttaaaaagagaagtttaaagcattaaagaattataatcagatgaaagaagctttggatttataaaattctgaaacaataattttaactttgcttttaacatatatgcaaattctttgatactctccactttccagaggtgcagcttcattcgctccctgtgaatgtggcctggacttaatgattcacttctatctgatggagtaatggtgacataacagttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74683826 435 + 122973662 taaggcactatcattatggcactgaagtcttggaactatttgatctagttactgtaagttctcaactgtgttgcaactcattaaagagaatattgttattaaaggtatttgtaagaaaaactcagagatactatagtatctcctttctctgtctcaaacttgtttcccctcaatacccaaggctctgtgatgtctcaaattttaatcattactttaaaaagagaagtttaaagcattaaagaattataatcagatgaaagaatctttggatttataaaattctgaaacaataattttaattttgcttttaacatatatgcaaactctttgacactctccactttccagaggtgcagcttcattccctccctgtgagtgtggcctggacttaatgattcacttctatctgatggagtaatgttgacataacagttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30172640 435 + 172585720 taaggcactattgttatggcactgaagtcttggaactatttgatctaattaccgtaagttctcaactgtgttgcaactcattcaagaggatattgttattaaaggtatttgcaagaaaaactcagagatactatagtatcctctttctatgtctcaaacatttttcccctcaatacccaaggctctgcgatatctcaaattttaatcattactttaaaaagagaagtttaaagcattaaagaattataatcagatgaaagaatatttggatttataaaattctgaaacaataattttaattttgcttttaacatatatgcaaattctttgatactctccactttccagaggtacagcttaattccctccctgtgaatgtggcctggacttaattattcacttctaactaatggagtaatgttgacataacagttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29835785 435 - 170955103 taaggcactattgttatggcactgaagtcttggaactatttgatctaattaccgtaagttctcaactgtgttgcaactcattcaagaggatattgttattaaaggtatttgcaagaaaaactcagagatactatagtatcctctttctatgtctcaaacatttTTCCCCTCAATACCCAAGGCTCTGCGAtatctcaaattttaatcattactttaaaaagagaagtttaaagcattaaagaattataatcagatgaaagaatatttggatttataaaattctgaaacaataattttaattttgcttttaacatatatgcaaattctttgatactctccactttccagaggtacagcttaattccctccctgtgaatgtggcctggacttaattattcacttctaactaatggagtaatgttgacataacagttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2885066 435 -   2996164 taaggcactattgttatggcactgaagtcttggaactatttgatctaattaccgtaagttctcaactgtgttgcaactcattcaagagaatattgttattaaaggtatttgcaagaaaaactcagagatactatagtatcctctttctatgtctgaaacatttttctcctcaatacccaaggctctgcgatatctcaaattttaatcattactttaaaaagagaagtttaaagcattaaagaattataatcagatgaaagaatatttggatttataaaattctgaaacaataattttaattttgcttttaacatatatgcaaattctttgatactctccactttccagaggtacagcttaattccctccctgtgaatgtggcctggacttaattattcacttctaactaatggagtaatgttgacataacagttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     633505 435 +    766320 taaggcactattgttatggcactgaagtcttggaactatttgatctagttaccataagttctcaactgtgttgcaactcattcaagagaatattgttattaaaggtatttgcaagaaaagctcagagatactatagtatctcctttctgtgtctcaaacatttttcccctcaatacccaaggctctgcgatatctcaaattttaatcattactttaaaaagagaagtttaaagcattatagaattataatcagatgaaagaagatttggatttataaaattctgaaacaataattttaattttgcttttaacatatatgcaaattctttgatactctccactttccagaggtacagcttaattccctccctgtgaatgtggcctggacttaatgattcacttctaactaatggagtaaagttgatataccagttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29089461 431 -  71996105 tatggcactattgttatggcactgaagtcttggaactatttgatctagttaccgtaagttctcaactgtgttgcaactcattcaagagaatactgttattaaaggtatttg-aagaaaaactcagagatattatagtatctcctttctatgtctcaaacatttTTCCCCTCAATACCCAAGGCTCTGCAAtatctcaaattttaatcattactttaaaaagagaagtttaaagcattaaagaattataatcagatga---aagattttgaattataaaattctgaaacaataattttaattttgcttttaacatatatgcaaattctttgatactctccactttccagaggtgcagcttaattccctccctgtgaatgtggcctggacttaatgattcacttctaactaatggagtaaagttgacataacagttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      25659 435 +    119286 taaggcactattgttatggcactgaagtcttggaactatttgatctagttaccataagttctcaactgtgttgcaactcattcaagagaatattgttattaaaggtatttgcaagaaaaactcagagatactatagtatctcctttccgtgtctcaaacatttttcccctcaatacccaaggctctgcgatatctcaaattttaatcattactttaaaaagagaagtttaaagcattatagaattataatcagatgaaagaagatttggatttataaaattctgaaacaataattttaattttgcttttaacatatatgcaaattctttgatactctccactttccagaggtacagcttaattccctccctgtgaatgtggcctggacttaatgattcacttctaactaatggagtaaagttgacataacagttt
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2742034 435 -   3067355 taaggcactattgttatggcactgaagtcttggaactatttgatctagttaccataagttctcaactgtgttgcaactcattcaagagaatatttttattaaaggtatttgcaagaaaaactcagagaaactatagtatctcctttctgtgtctcaaacatttttcccctcaatacccaaggctctgtgatgtctcaaattttaatcattactttaaaaagagaagtttaaagcattaaagaattataatcagatgaaagaagatttggatttataaaattctgaaactataattttaattttgcttttaacatatatgcaaattctttgatactctccactttccagaggtacagcttaattccttccctgtgaatgtggcgtggacttaatgattcacttctaactaatggagtaatgttgacataacagttt
i colAng1.NW_012115566v1   I 313 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     320428 70291 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=285969.000000
s hg38.chr6_GL000254v2_alt   982095 47 +   4827813 gtgactgttggtgtagaacaaaaaacttaccgtagcttctacctttg
s panTro5.chr6             29944851 47 + 175400573 gtgactgttggtgtagaacaaaaaacttaccgtagcttctacctttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30178450 47 + 173848474 gtgactgttggtgtagaacaaaaaacttaccgtagcttctacctttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5978794 47 +   6154872 gtgactgttggtgtagaacaaaaaacttaccgtagcttctacctttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74684261 47 + 122973662 gtgactcttggtgtagaacaaaaaacttaccgcagcttctacctttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30173075 46 + 172585720 gtgactcttggtgtagaacaaaaaacttaccgtagc-tccacctttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29836220 46 - 170955103 gtgactcttggtgtagaacaaaaaacttaccgtagc-tccacctttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2885501 46 -   2996164 gtgactcttggtgtagaacaaaaaacttaccgtagc-tccacctttg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     633940 46 +    766320 gtgactcttgatgtagaacaaaaaacttaccgtagc-tccacctttg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29089892 46 -  71996105 gtgactcttggtgtagaacaaaaaacttaccgtagc-tccacctttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      26094 46 +    119286 gtgactcttgatgtagaacaaaaaacttaccgtagc-tccacctttg
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2742469 47 -   3067355 gtgactcttggtgtaaaacaaaaaacttaccgtagcttccacctttg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364            20015 47 +    187130 gtgacactggatgtagaacataaaactcactgtggcttctactttct
i saiBol1.JH378364         N 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     320428 70291 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=5232220.000000
s hg38.chr6_GL000254v2_alt   982142 741 +   4827813 ctctctctgtctctgggatcatgaactctgggggaagccagctgctgtgtcataagcagacctgtggaaaggtccatgtggct-aggaccgaggcctcccgggaccagacaacaaggaactgaggccttttccaatagccatgtgagtgagccatttttcatgcaaatccccag-cccagttgagccctcagatgatgcagccc-t-ggctgacaactggactgcaaccttgtgagaggccctgagccagaaacactcagggaaacctctcctggattcctgagcattggaaactgtgggagatgataaatatttgttgctttgagctgttacattttcagtaatttgtaatgtaacagtaaaaaaa--aatacaGCTTCACAAGAGAGGATGAATAGTTGCACTTTAATTTTCATTTGCTCTAAATttattagtgttattgttatcatcattattattgagacagggtcttgctctgtcactcaggctgcagtgctgtggcagg-aggacagctcactgcagcctcgacctcctaggctcatgtgatcttcccacctcagctgtctgagtagctgggagtacagacatgcaccaccatgcctggctaaaatttttgtatttttg---gtagagacaagggttttgccatgctgcctaggctgatctcgaactcatgaaatcaagctctctgcctgactccacctccaaaagtgctgggattacaggcatgagccaccacCACACCCAACC
s panTro5.chr6             29944898 742 + 175400573 ctctctctgtctctgggatcatgaactctgggggaagccagctgctgtgtcataagcagacctgtggaaaggtccatgtgcct-aggaccgaggcctcccgggaccagacaacaaggaactgagggcttttccaatagccatgtgagtgagccattttccatgcaaatccccag-cccagttgagccctcagatgatgcagccc-t-ggctgacaactggactgcaaccttgtgagaggccctgagccagaaacactcagggaaacctctcctggattcctgagcattggaaactgtgcgagatgataaatatttgttgcttcgagctgtcacattttcagtaatttgtaatgtaacagtaaaaaaa-caatacaGCTTCACAGGACAGGATGAATAGTTGCACTTTAATTTTCATTTGCTCTAAATTTATTAGTGTTATTGTTATCATCAttattattgagacaaggtcttgctctgtcactcaggctgcagtgctgtggcagg-aggacagctcactgcagcctcgacctcctaggctcatgtgatcttcccacctcagctgtttgagtagctgggagtacagacatgcaccaccatgcctggctaaaatttttgtatttttg---gtagagacaagggttttgccatgctgcctaggatgatctcgaactcatgaaatcaagccctctgcctgactccgcctccaaaagtgctgggattacaggcatgagccaccacCACACCCAACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30178497 742 + 173848474 ctctctctgtctctgggatcatgaactctgggggaagccagctgctgtgtcataagcagacctgtggaaaggtccatgtggct-aggaccgaggtctcccgggaccagacaacaaggaactgagggcttttccaatagccatgtgagtgagccatttttcatgcaaatccccag-ctcagttgagccctcagatgatgcagccc-t-ggctgaaaactggactgcaaccttgtgagaggccctgagccagaaacactcagggaaacctctcctggattcctgagcattggaaactgtgggagatgataaatatttgttgctttgagctgttacattttcagtagtttgtaatgtaacagtataaaaa-caatacaGCTTCACAAGACAGGATGAATAGTTGCACTTTAATTTTCATTTGCTCTAAATTTATTAGTGTTATTGTTATCATCAttattattgagacaaggtctttctctgtcactcaggctgcagagctgtggcagg-aggacagctcactgcagcctcgacctcctaggctcatgtgatcttcccacctcagctgtctgagtagctgggagtacagacatgcaccaccatgcctggctaaaatttttgtatttttg---gtagagacaagggttttgccatgctgcctaggctgatctcgaactcatgaaatcaagctctctgcctgactccacctccaaaagtgctgggattacaggcatgagccaccacCACACCCAACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5978841 741 +   6154872 ctctctctgtctctgggatcatgaactctgggggaagccagctgctgtgtcataagcagacctgtggaaaggtccatgtggct-aggaccgaggcctcccgggaccagacaacaaggaactgagggcttttccaatagccatgtaagtgagccatttttcatgcaaatccccag-cccagttgagccctcagatgatgcagccc-t-ggctgaaaactggactgcaaccttgtgagagg-cctgagccagaaacactcagggaaacctctcctggattcctgagcattggaaactgtgggagatgataaatatttgttgctttgagctgttacattttcagtagtttgtaatgtagcagtataaaaa-caatacaGCTTCACAAGACAGGATGAATAGTTGCACTTTAATTTTCATTTGCTCTAAATttattagtgttattgttatcatcattattattgagacaaggtcttgctctgtcactcaggctgcagtgctgtggcagg-aggacagctcactgcagcctcgacctcctaggctcatgtaatcttcccacctcagctgtctgagtagctgggagtacagacatgcaccaccatgcctggctaaaatttttgtatttttg---gtagagacaagggttttgccatgctacctaggctgatctcgaactcatgaaatcaagctctctgcctgactccacctccaaaagtgctgggattacaggcatgagccaccacCACACCCAACC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74684308 740 + 122973662 ctctctctgtctctgggatcatgaactctgagggaagccggctgctgtgtcataagcagacctgtgcaaaggtccatgtggct-aggaccgaggcctcctgggaccagacagcaaggaactgaggccttttccaatagccatgtgagtgagccatttctcatgcaaatccccag-ccaagttgaaccctcagatgatgcagccc-t-ggctgacaactggactgcaaccttgtgagaggccctgagccagaaacactcagggaaacctctcctggattcctgagcattggaaactgtgggagatgataaatatttgttgctttgagctgttacattttcagtaatttgtaatgtaacagtaaaaaaatcaatacaGCTTCACAAGAGAGGATGAATAATTGCACTTTAATTTTCATTTGCTCTAAATGtattagtattattgttatcatcattattattgagacagggtcttgctgtgtcactcaggctggagtgctgtggcagg-aggacagctcactgcagcctcgacctcataggatcatgtgatcttcccacctcagctgtctgagtagctgggagtacagacatgcaccaccatgcctggctaaaatttttatatttttg---gtagagacaagggttttgccatgctgcctaggctgatctcgaactggtgaaatcaagctctctgcctgactctgcctccgaaattgctggtattacaggcatgag---ccaccacacccaacc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30173121 740 + 172585720 ctctctctgtctctgggatcatgaactctgggggaagccgggtgctgtgtcataagcagacttgtggaaaggtccatgtggct-aggactgaggcctcctaggaccagacaacaaggaactgaggccttttccaacagccatgtgagtgagccatttttcatgcaaatctccag-cccagttgagccctcagatgatgcagccc-tagactgacaactggactgcaaccttgtgagaggccctgagccagaaggaccgcaggaaacctctcctggattcctgagcattggaaactgtgggagatgatcaatatttgttgctttgagctgttacattttcagtaatttgtaatgtaacagtaaaaaaatgaatacaGCTTCACAAGAGAGGATGAATAATTGCACTTTAATTTTCATTTGCTCTAAATttattagtattattgttatcgtcattattattgaaacagggtcttgctctatcacttaggctggagtgctgtggcagg-atgacagctcactgcagccttgacctcctgggctcaa-tgatcttcccacctcagctgtctgagtagctgggagtacagacatgcaccaccatgcctggctaaaatttttatatttttg---gtagagacaagggtttttccatgctgcctaggctgatcttgaactcgtgaaatcaagctctctgcctgactctgcctccaaaagtgctgggattacaggtatgag---ccacTACAACCAACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29836266 741 - 170955103 ctctctctgtctctgggatcatgaactctgggggaagccaggtgctgtgtcataagcagacttgtggaaaggtccatgtggct-aggaccgaggcctcctaggaccagacaacaaggaactgaggccttttccaacagccatgtgagtgagccatttttcatgcaaatctccag-cccagttgagccctcagatgatgcagccc-tagactgacaactggactgcaaccttgtgagaggccctgagccagaagcaccgcaggaaacctctcctggattcctgagcattggaaactgtgggagatgatcaatatttgttgctttgagctgttacattttcagtaatttgtaatgtaacagtaaaaaaatgaatacaGCTTCACAAGAGAGGATGAATAATTGCACTTTAATTTTCATTTGCTCTAAATttattagtattattgttatcgtcattattattgaaacagggtcttgctctatcactcaggctggagtgctgtggcaggaatgacagctcactgcagcctcgacctcctgggctcaa-tgatcttcccacctcagctgtctgagtagctgggagtacagacatgcaccaccatgcctggctaaaatttttatatttttg---gtagagacaagggttttgccatgctgcctaggctgatcttgaactcgtgaaatcaagctctctgcctgactctgcctccaaaagtgctgggattacaggtatgag---ccacTACAACCAACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2885547 741 -   2996164 ctctctctgtctctgggatcatgaactctgggggaagccgggtgctgtgtcat-agcagacttgtggaaaggtccatgtggct-aggaccgaggcctcctaggaccagacaacaaggaactgaggccttttccaacagccatgtgagtgagccatttttcatgaaaatctccag-cccagttgagccctcagatgatgcagccc-tagactgacaactggactgcaaccttgtgagaggccctgagccagaagcaccacgggaaacctctcctggattcctgagcattggaaactgtgggagatgatccataattgttgctttgagctgttacattttcagtaatttgtaatgtaacagtaaaaaaatgaatacaGCTTCACAAGAGAGGATGAATAATTGCACTTTAATTTTCATTTGCTCTAAATttattagtattattgttatcatcattattattgaaacagggtcttgctctgtcactcaggctggagtgctgtggcaggaatgacagctcactgcagcctcgacctcctgggctcaagtgatcttcccacctcagctgtctgagtagctgggagtacagacgtgcaccaccatgcctggctaaaatttttatatttttg---gtggagacaagggttttgccatgctgcctaggctgatcttgaactcgtgcaatcaagctctctgcctgactctgcctccaaaagtgctgggattacaggcatgaa---ccaccacaatcgacc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     633986 742 +    766320 ctctctctgtctctgggatcatgaactctgggggaagctggctgctgtgtcataagcagacctgtggaaaggtccatgtggct-gggactgaggcctcctgggaccagacaacaaggaactgaggccttttccaacagccatgtgagtgagccatttttcatgcaaatctccat-cccagttgaggcctcagataatgcagccg-tagactgacaaccggactgcaaccttgtgagaggccctgagccagaagcaccgcgggaaacctctcctggattcctgagcattggaaactgtgggagatgatccatatttgttgctttgagctgttacatttttagtaatttgtaatgtaacagtaaaaaaatgaatacaGCTTCACAAGAGAGGATGAATAATTGCACTTTAATTTTCATTTGCTCTAAATttattagtattattgttatcatcattattattgaaacagggtcttgctctgtcactcaggctggagtgctgtggcaggaatgacagctcactgcagcctcgacctcctgtgctcaagtgatcttcccacctcagctgtctgagtagctgggaggacagacaagcaccaccatgcctggctgaaatttttatatttttg---gtagagacaagggttttgccatgctgcctaggctgatcttgaactcgtgaaatcaagctctctgcctgactctgcctccgaaagtgctgggattacaggcatgag---ccaccacaaccgacc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29089938 736 -  71996105 ctctccctgtctctgggatcatgaactctgggggaaactggctgctgtgtcataagcagacctgtggaaaggtccatgtggct-aggaccgaggcctcctgggaccagacaacaaggaactgaaggcttttccaacagccatgtgagtgagccatttttcatgcaaatttccag-cccggttgagccctcagataatgcagccg-tagactgacaagtggactgcaaccttgtgagaggccctgagccagaagcaccgcgggaaacctctcctggattcctgagcattggaaactgtgggagatgatcaatatttgttgctttgagctgttacattttcagtaact-----tgtaacagtaaaaaaatgaatacaGTTTCACAAGAGAGGATGAATAATTGCACTTTAATTTTCATTTGCTCTAAATttattagtattattgttatcatcattattattgaaacagggtcttgctctatcactcaggctggattgctgtggcagg-atgacagctcactgcagcctcgacctcctgggctcaagtgatcttcccacctcagctgtctgagtagctgggagtacagacaagcaccaccatgcctggctgaaatttttatatttttg---gtagagacaagggttttgccatgctgcctaggctgatcttgaactcatgaaatcaagctctctgcctgactctgcctccgaaagtgctgggatgacaggcatgag---gcaccacaaccgacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      26140 742 +    119286 ctctctctgcctctgggatcatgaactctggaggaagctggctgctgtgtcataagcagacctgtggaaaggtccatgtggct-gggactgaggcctcctgggaccagacaacagggaactgaggccttttccaacagccatgtgagtgagccatttttcatgcaaatctccat-cccagttgaggcctcagataatgcagcca-tagactgacaaccggactgcaaccttgtgagaggccctgagccagaagcaccgcgggaaacctctcctggattcctgagcattggaaactgtgggagatgatccatatttgttgctttgagctgttacatttttagcaatttgtaatgtaacagtaaaaaaatgaatacaGCTTCACAAGAGAGGATGAATAATTGCACTTTAATTTTCATTTGCTCTAAATTTATTAGTATTATTGCTATCATCAttattattgaaacagggtcttgctctgtcactcaggctggagtgctgtggcaggaatgacagctcactgcagcctcgacctcctgggctcaagtgatcttcccacctcagctgtctgagtagctgggagtacagacgtgcaccaccatgcctggctaaaatttttatatttttg---gtggagacaagggttttgccatgctgcctaggctgatcttgaactcgtgaaatcaagctctctgcctgactctgcctccaaaagtgctgggattacaggcatgaa---ccaccacaaccgacc
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2742516 741 -   3067355 ctctctctgtctctgggatcatgaattctgggggaagccggctcctgtgtcataagcagacctgtggaaaggtccatgtggct-aggaccgaggcctcctgggaccagacaacaaggaactgaggccttttccaacagccatgtgagtgagccatttttcatgcaaatctccag-cccagttgagccctcagatgatgcagccc-tagactgacaactggactgaaaccttatgagaggccctgagccagaagcaccgtgggaaacctctcctggattcctgagcattggaaactgtgggagatgatcaatatttgttggtttgagctgttacattttcagtaatttgtaatgtaacagtaaaaaaatgaatacaGTTTCACAAGAGAGGATGAATAATTGCACTTTAATTTTCATTTGCTCTAAATttattagtattattgttatcatcattattattgaaacagggtcttgctctgtcactcgggctggagtgctgtggcagg-atgacagctcactgcagcctcgacctcctgggctcaagtgatcttcctacctcagctgtctgagtggctgggagtacagacatgcaccaccatgcctggctaaaatttttatatttttg---gtagagacaagggttttgccatgctgcctaggctgatcttgaactagtgaaatcaagctctctgcctgactccgcctccaaaagtactgagattacaggcatgag---ccaccacaaccgacc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364            20062 732 +    187130 ctctctctgactctgggatcatgagctctgggggaagccagctgctgtgctataagctgccctgcaggaaggtccatgtggctaagaactgaggccttctgagaccagacaacaagaaact-agaccttttccaacagccatgtgactgagccatgtttcatgtgaatcctcagccccagtgaaacactcagatgatgcagccctt-ggctgacaactggactacagccttgtgagaggaactgagccagaagcactcagggaaacctctcctagattcctgactgtttgaaactgtgggagatgatgaatatttgttgttctgagctgctaagttttacataattcgttatgcaatagtaaataac-taat----TTTCACAACAAAGTATGTATTATTACACACTAATTTGCATTTGCTCTAAATTTA------TCATCATCATCATTATTAtttttgagacagggtctcattctgtcacccaggctggagtgcagtggcatg-atgaccatgcactgccgtgtcgacctcctgggctcaagggatcctgtgacctcagcctccggagtagctgggactacaggcatgaaccaccatgcctcgctaattttctaa--tttttgcttgtagagataggggtttgaccatgtttcccaggctgatcttgaacttctggagtcaacaaatctgccttcctctactttccacagtactaatattgcaggtgtgag---ccaccacaccaggcc
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     390719 727 -   1771730 ctctctctgtctctgggatcatgagctgtgggggaagccagctgctgtgctataatctgccctgcaggaaggtccatgtggctaagaactgaggacttctgagaccagacaacaagaaact-aggccttttccaacagccatgtgactgagccatgtttcatgtgaatcctcagccccagtgaaacactcagatgatggagccc-t-ggctgacaactggactacaactttgtgagaggaactcagccagaagcactcagggaaacctctcctggattcctgaccattggaaactgtgggagatgatgaatatttgttgttttgagctgctaagttttacataattcgttatgcaatagtgaataac-gaat----TTTCACAAGAAAGTATGTATTATTACACATTAATTTGCATTTGCTCTAAATTT------------ATCATCATTATTAtttttgagatggggtcacgctctgtcacccaggctggagtgcagtggcatg-atcaccatgcactgcagtgtcgaccttctgggctcaagggatcctgtgacctcagcctcctgagtatctgggactataggcacgaaccaccatgcctggctaattttctaatttttttttttgtagagatgggggtttgaccatgtctcccaggctgatcttgaacttttggaatcaacaaatctgccttcctctgccttccacagtactaatattgcaggcgtgag---ccaccacaccaggcc
i cebCap1.NW_016107755v1   I 70291 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=1537049.000000
s hg38.chr6_GL000254v2_alt   982883 195 +   4827813 TAAATtaattataaaatattaaacatgtcatttggttttaagaggtaagaggaatttccatggctaaataggatgtattttattatcattcacaattattgctttatttgaacttcaatttccacctgtgtcccaattaaactcaaaagaaagaCCCAAGCCTtgctaggctgattctatcatcc-cc----cccatgat
s panTro5.chr6             29945640 196 + 175400573 TAAATtaattataaaatattaaacatgtcatttggttttaagaggtaagaggaatttccatggctaaataggatgtattttattatcattcacaattattgctttatttgaacttcaatttccaactgtgtcccaattaaactcaaaagaaagacccaagcCATGCTAGGCTGATTCTATCATCC-CC---TCCCATGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30179239 196 + 173848474 TAAATtaattataaaatattaaacatgtcacttggttttaagaggtaagaggaatttccatggctaaacaggatgtattttattatcattcacaattattgctttatttgaacttcagtttccacctgtgtcccaattaaactcaaaagaaagacccaagcCATGCTAGGCTGATTCTATCATCC-CC---TCCCATGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5979582 199 +   6154872 TAAATtaattataaaatattaaacatgtcatttggttttaagaggtaagaggaatttccatggctaaataggatgtattttattatcattcacaattattgctttatttgaacttcaatttccaactgtgtcccaattaaactcaaaagaaagacccaagcCATGCTAGGCTGATTCTATCATCC-CCCCTCCCCATGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74685048 196 + 122973662 TAAATtaattataaaatattaaacatgtcatttggttttaagaggtaagaagaatttccgtggctaaataggatgcattttattatcattcacaattattactttatttgaacttcaatttccaactgtgtcccaattaaactcaaaagaaagaCCCAAGCCATGCTAGGCTGATTCTATCATCA-CC---CCCCATGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30173861 195 + 172585720 TAAATtaattacaaaatattaaacatgtcatttggttttaagtggtaagaagaatttccatggctaaatagaatgtattttattatcattcacaattattgttttatttgaacttcaatttccaactgtgtcccaattaaactcaaaagaaagacccaagcCAtgctaggctgattccatcatcg-cc----cccatgat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29837007 195 - 170955103 TAAATtaattacaaaatattaaacatgtcatttggttttaagtggtaagaagaatttccatggctaaatagaatgtattttattatcattcacaattattgttttatttgaacttcaatttccaactgtgtcccaattaaactcaaaagaaagaCCCAAGCCAtgctaggctgattccatcatcg-cc----cccatgat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2886288 195 -   2996164 TAAATtaattataaaatattaaacatgtcatttggttttaagaggtaagaagaatttccatggctaaataggatgtattttattatcattcacaattattgctttatttgaacttcaatttccaactgtgtcccaattaaactcaaaagaaagacccaagcCAtgctaggctgactccatcatcg-cc----cccatgat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     634728 195 +    766320 TAAATtaattacaaaatattaaacatgtcatttggttttaagaggtaagaagaatctccatggctaaataggatgtattttattatcattcacaattattgctttatttgaacttcaatttccaactatgtcccaattaaactcaaaagaaagacccaagcCAtgctaggctgattccatcatcg-cc----tccatgat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29090674 195 -  71996105 TAAATAAattataaaatattaaacatgtcatttgcttttaagaggtaagaagaattttcatggctaaataggatgtattttattatcattcacaattattgctttatttgaacttcaatttccaactgtgtcccaattaaactcaaaagaaagaCCCAAGCCAtgctaggctgattccatcatcg-cc----cccatgat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      26882 195 +    119286 TAAATtaattacaaaatattaaacatgtcatttggttttaagaggtaagaagaatctccatggctaaataggatgtattttattatcattcacaattattgctttatttgaacttcaatttccaactgtgtcccaattaaactcaaaagaaagacccaagcCAtgctaggctgattccatcatcg-cc----tccatgat
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2743257 196 -   3067355 TAAATtaattataaaatattaaacatgtcatttgattttaagaagtaagaagaatttccatggctaaatagcatgtattttattatcattcacaattattgctttatttgaacttcaatttccaatggtgtcccaattaaactcaaaagaaagCCCCAAGCCAtgctaggctgattccatcatcgccc----cccatgat
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364            20794 189 +    187130 TAAATTAAC--TAAGCTATTAAACATGTAACTTAGTTGTAAAAGGTAAGGAGAATTTCCATGGCTGAAGAGGATGTATTTTATTACCGTTCACAATAATCACTTTACTTTAACTTCAATTTCCTACTGTGTCTCAATTAAACACAAAAGGAAGATCCAACACTTGCTAGGGTGattctgtgatgg-cc----ccca----
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     391446 195 -   1771730 TAACTtaactataagatattaaacatgtaacttagttgtaaaaggtaaggagaatttccatggctgaagaggatgtattttattaccgttcacaattttcactttacttgaacttcaatttcctactgtgtctcaattaaacacaaaaggaagaTCCAACCCTtgctaggctgattctatgatgg-cc----ccaacaac
i cebCap1.NW_016107755v1   C 0 I 5
s otoGar3.GL873550         16734852 186 -  18854210 TACGTTAATTA-----TATTAAACATGTTATTTGGTT-TAGGATGTAAGAATAATTTCCGTGGCTAAAAAGGATGCATTGtattcccactctcaaacacctactcatttgaacttctattttcaactctgatcc-attaaacacaaagggaagatccaggcCAtgctaggctgactctatgatgt-cc---ccccat---
i otoGar3.GL873550         N 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=41669.000000
s hg38.chr6_GL000254v2_alt   983078 11 +   4827813 agacgtgtaac
s panTro5.chr6             29945836 11 + 175400573 AGACGTGTAAc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30179435 11 + 173848474 AGACATGTAAc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5979781 11 +   6154872 AGACATGTAAc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74685244 11 + 122973662 AGACGTGTAAc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30174056 11 + 172585720 aggcgtgtgcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29837202 11 - 170955103 aggcgtgtgac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2886483 11 -   2996164 aggcatgtgcc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     634923 11 +    766320 aggcgtgtgcc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29090869 11 -  71996105 aggcgtgtgcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      27077 11 +    119286 aggcgtgtgcc
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2743453 11 -   3067355 aggcgtgtgcg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364            20983  5 +    187130 ------acaac
i saiBol1.JH378364         C 0 I 5
s otoGar3.GL873550         16735038  8 -  18854210 aaccatgc---
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     391641  5 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=507238.000000
s hg38.chr6_GL000254v2_alt   983089 67 +   4827813 cttggtcattcacctgaccccagttattcaaccaacaataatgtaagtcctgccttgaagggatttt
s panTro5.chr6             29945847 67 + 175400573 cttggtcattcacctgaccccagttattcaaccaacagtaatgtaagtcctgccttgaagggatttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30179446 67 + 173848474 cttggtcattcacctgaccccagttattcaaccaacagtaatgtaagtcctgccttgaagggatttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5979792 67 +   6154872 cttggtcattcacctgaccccagttattcaaccaacagtaatgtaagtcctgccttgaagggatttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74685255 67 + 122973662 cctggtcattcacctgaccccagttattcatccaacagtaatgtaagtcctgccttgaagggatttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30174067 67 + 172585720 cctagtcattcacctgaccccagttaatcaaccaacaaaaatgtaggtcctgccttgaagggatttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29837213 67 - 170955103 cctagtcattcacctgaccccagttaatcaaccaacaaaaatgtaggtcctgccttgaagggatttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2886494 67 -   2996164 cctagtcattcttctgaccccagttaatcaaccaacaaaaatgtaggtcttgccttgaagggatttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     634934 67 +    766320 cctagtcattcatctgaccccagtgaatcaaccaacaaaaatgtaggtcctgccttgaagggatttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29090880 67 -  71996105 cctagtcattcacctgaccccagtgaatcaaccaacaaaaatgtaggtcctgccttgaagggatttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      27088 67 +    119286 cctagtcattcatctgaccccagtgaatcaaccaacaaaaatgtaggtcctgccttgaaggaatttt
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2743464 67 -   3067355 cctggtcattcacctgaccccagttaatcaaccaacaataatgtaggtcctgccttgaagggatttt
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364            20993 67 +    187130 cctgatcattcaccttcccccagttattcaaccaactctaatgtaggtgctgctgtgaagggattca
i saiBol1.JH378364         I 5 C 0
s cebCap1.NW_016107755v1     391646 67 -   1771730 cctggtcattcaccttcccccagttattcccccaactctaatgtaggtgctgctgtgaagggattcc
i cebCap1.NW_016107755v1   I 5 I 55
s otoGar3.GL873550         16735046 66 -  18854210 cttcattatgcaccttaccctgggtattcaatgaacactaatgtagatgctgctgtgaaggaattt-
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=404721.000000
s hg38.chr6_GL000254v2_alt   983156 58 +   4827813 tgcatatataattaaggtcctaaatcaattgactttaagacagggattatccctggtc
s panTro5.chr6             29945914 58 + 175400573 tgcatatataattaaggtcctaaatcaattgactttaagacagggattatccctggtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30179513 58 + 173848474 tgcatatataattaaggtcctaaatcaattgactttaagacagggattatccctggtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5979859 58 +   6154872 tgcatatataattaaggtcctaaatcaattgactttaagacagggattatccctggtc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74685322 58 + 122973662 tgcacatataattaaggtcctaaatcaattgactttaagacagggattatccttggtc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30174134 58 + 172585720 tacatatataattaaggtcctaaatcaattgactttaagacagggattatccttggtc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29837280 58 - 170955103 tacatatataattaaggtcctaaatcaattgactttaagacagggattatccttggtc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2886561 58 -   2996164 tacatatataattaaggtcctaaatcaattgactttaagacagggattatccttggtc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     635001 58 +    766320 tacgtatataattaaggtcctaaatcaattgactttaagacagggattatccttggtt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29090947 58 -  71996105 tacatatataattaaggtcctaaatcaattgactttaagacagggattatccttggtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      27155 58 +    119286 tacatatataattaaggtcctaaatcaattgactttaagacagggattatccttggtt
i manLeu1.NW_012101411v1   C 0 C 0
s colAng1.NW_012115566v1    2743531 58 -   3067355 tacatatataattaaggtcctaaatcaattgactttaagacagggattatccttggtc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364            21060 55 +    187130 -gcagatatagttaagggtgtcaattagttgactttatg-ctgagtttattctgagt-
i saiBol1.JH378364         C 0 C 0
s otoGar3.GL873550         16735112 57 -  18854210 -acagatataattacagtcccaaatcagttaactttaagatggtgattatcctggact
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     391713 55 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=14420.000000
s hg38.chr6_GL000254v2_alt   983214 3 +   4827813 ggg-
s panTro5.chr6             29945972 3 + 175400573 ggg-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30179571 3 + 173848474 agg-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5979917 3 +   6154872 ggg-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74685380 3 + 122973662 agg-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30174192 3 + 172585720 agg-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29837338 3 - 170955103 agg-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2886619 3 -   2996164 ggg-
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     635059 3 +    766320 ggg-
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29091005 3 -  71996105 ggg-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101411v1      27213 3 +    119286 ggg-
i manLeu1.NW_012101411v1   C 0 N 0
s colAng1.NW_012115566v1    2743589 3 -   3067355 ggg-
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364            21115 2 +    187130 -gg-
i saiBol1.JH378364         C 0 I 1
s cebCap1.NW_016107755v1     391768 2 -   1771730 -gg-
i cebCap1.NW_016107755v1   I 55 I 1
s otoGar3.GL873550         16735169 3 -  18854210 -gaa
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=1609587.000000
s hg38.chr6_GL000254v2_alt   983217 264 +   4827813 ctgtcctcatctggcgagcccctgaaaggactgggttcttcctgatcagagagattcacagtgtgagagggattcagtgtga-gggggttcctccaatgtggattctaaaaatgaaggggctgtgtggcaaagaatgctggtgggcaccaggaattgagagcagcct------ctctctaccttgacagtaggcaa-ggaacaggaaccttagtcctacaactggcagaaactgaattctgtc----gcctctgtataagcctgaaggaggccctc
s panTro5.chr6             29945975 193 + 175400573 ctgtcctcatctggtgagcccctgaaaggactgggttcttcctgatcagagagattcacagtgtgagagggattcagtgtga-gggggttcctccaatgtggattctaaaaatgaagaggctgtgtggcaaagaatgctggtgggcaccaggaattgagagcag------------------------------------------------------------------------------c----gccTCTGTATAAGCCTGAAGGAGGCCCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30179574 264 + 173848474 ctgtcctcatctggcgagcccctgaaaggactggcttcttcctgatcagagagattcacagtgtgagagggattcagtgtga-gggggttcctccaatgtggattctaaaaatgaaggggctgtgtggcaaagaatgctggtgggcaccaggaattgagagcagcct------ctctctaccttgacagtaggcaa-ggaacaggaaccttagtcctacaactggcagaaactgaattctgtc----gcctctgtataagcctgaaggaggccctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5979920 263 +   6154872 ctgtcctcatctggcgagcccctgaaaggactgggttcttcctgatcagagagattcacagtgtgaga-ggattcagtgtga-gggggttcctccaatgtggattctaaaaatgaaggggctgtgtggcaaagaatgctggtgggcaccaggaattgagagcagcct------ctctctaccttgacagtaggcaa-ggaacaggaaccttagtcctacaactggcagaaactgaattctgtc----gcctctgtataagcctgaaggaggccctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74685383 265 + 122973662 ctgtcctcatctggcgagcccctgaaaggactgggttcttcctgatcagagagattcacagtgtgagagggattcagtgtgaggggggttcctccactgtgggttttaaaaatgaaggggctgtgcggcaaagaataccagtgggcaccaggaattgacggcagcct------ctctctaccttgacagcaggcaa-ggaacaggaaccttagtcctacaactggcagaaactgaattctgtc----acctctgtataagcctgaaggaggccctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30174195 264 + 172585720 ctgtcctcatctggtaagatcttgaaaggaccggtttcttcctgatcatagagattgacagtgtgagatggattcagtgtga-gggaattccgccactgtgggttttaaaaatgaaggggctgtgtggcaaagaatgctggtgggcaccaggaattgttagcagcct------ctctctaccttgacagcaggcaa-ggaacaggaaccgtagtcctacaactggcagaaactgaattctgtc----acctctgtctaagcctgaaggaggtcctc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29837341 264 - 170955103 ctgtcctcatctggtaagaccttgaaaggaccggtttcttcctgatcatagagattgacagtgtgagatggattcagtgtga-gggaattccaccactgtgggttttaaaaatgaaggggctgtgtggcaaagaatgctggtgggcaccaggaattgttagcagcct------ctctctaccttgacagcaggcaa-ggaacaggaaccgtagtcctacaactggcagaaactgaattctgtc----acctctgtctaagcctgaaggaggtcctc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2886622 264 -   2996164 ctgtcctcatctggtaagaccttgaaaggaccgttttcttcctgatcatagagattgacagtgtgagatggattcagtgtga-gggagttcctccactgtgggttttaaaaatgaaggggttgtggggcaaagaatgatggtgggcaccaggaattgatagcagcct------ctctctaccttgacagcaggcaa-ggaacaggaaccttagtcctacaactggcagaaattgaattctgtc----atctctgtataagcctgaaggaggtcctc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     635062 264 +    766320 ctgtcctcatctggcaagaccttgaaaggactgggttcttcctgatcatagagattgacagtgtgagatggattcagtgtga-gggagttcctccactgtgggttttaaaaatgaaggggctgtgtggcaaagaatgatggtgggcaccaggaattgatagcagcct------ctctctaccttgacagcaggcaa-ggaacaggaactttagtcctacaactggcagaaactgaattctgtc----acctctgtataagcctgaaggaggtcctc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29091008 264 -  71996105 ctgtcctcatctggtaagaccttgaaaggactgtgttcctcctgatcacagagattgacagtgtgagacggattcagtgtga-gggagttcctccactgtgggttttaaaaatgaaggggctgtgtggcaaagaatgctggtgggcaccaggaattgatagcagcct------ctctctaccttgacagcaggcaa-ggaacaggaaccgtagtcctacaactggcagaaactgaattctgtc----acctccgtctaagcctgaaggaggtcctc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2743592 264 -   3067355 ctgtcctcatctggcaagcccttgaaaggaccgggttcttcctgatcatagagattgacagtgtgagatggattcggtgtga-gggagttcctccactgtgggttttaaaaatgaaggggctgtgtggcaaagaatgctggtgggcaccaggaactgatagcagcct------ctctctaccttgacagcaggcaa-ggaacaggaaccttagtcctacaactgtcagaaactgaattctgtc----acgtctgtataagcctgaaggaggtcctc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364            21118 269 +    187130 ctgtcctaaccaggtgaacctgggaaaggactaggttcttcctgagcatagagattcacagtgtgagagggattcagcatga-ggggtttcctccacagtgggctttgaaaatgaaggggctgtgtaggcaagaatgctgatgggcaccagaaattgaacacagccctccctgttctctaccttgacagccagcag-ggaacaggaacctcagtcttacaactgccagaaactgcattctgtc----atctctgtataagcctgaaagagg-attc
i saiBol1.JH378364         I 1 C 0
s cebCap1.NW_016107755v1     391771 269 -   1771730 ctgtcctaatcaggtgaacctgggaaaggactaggtccttcctgagcatagagattcacagtgtgagtgggattcagcatga-ggggtttcctccactgtgggctttgaaaatgaaggagctgtgtaggcaagaatgctggtggacaccaggaattgaacacttcccttcatgttctctaccttgacagccagcaa-cgaacagggacctcagtcttacaactgccagaaactgcattctgcc----acctctgtatcagcctgaagaagg-attc
i cebCap1.NW_016107755v1   I 1 C 0
s otoGar3.GL873550         16735172 244 -  18854210 ctgagctaatcaggtgagctctt-aaaagactgggttcttctggaatat-gagattcacaggcagagaaggactcagtgtga-g-----------actttgggctttcaaagtggagagttcctacagcaaagaatgccagtgg-----------------cagcccacctgcctctctaccctgatagctggcaatcaaacaaggacttcagtcctacaattatcagaaagtgaattctacccatgagctttgtataagctt-agggaggacccc
i otoGar3.GL873550         C 0 I 38
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=1048012.000000
s hg38.chr6_GL000254v2_alt   983481 177 +   4827813 aaaatgaaaacacagttttgggaaaccctaaacagagaaccc-tcca-atcatgctcagatttctgactaaggaactgtaaataaataaataagtgttgtttggtcaagcgtggtagctcatgcctgtaatcctaaggtttgtgggaatgacacaggaggattacttgcagccaggag--t
s panTro5.chr6             29946168 177 + 175400573 AAAATGAAAACAcagttttgggaaaccctaaacagagaaccc-tcca-atcatgctcagatttctgactaacgaactgtaaataaataaataagtgttgtttggtcaagcgtggtagctcatgcctgtaatcctaaagtttgtgggaatgacacaggaggattacttgcagccaggag--t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30179838 177 + 173848474 aaaatgaaaacacagttttgggaaaccctaaacagagaaccc-tcca-atcgtgctcagatttctgactaaggaactgtacataaataaataagtgttgtttggtcaagcgtggtagctcatgcctgtaatcctaaggtttgtgggaatgacacaggaggattacttgcagccaggag--t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5980183 177 +   6154872 aaaatgaaaacacagttttgggaaaccctaaacagagaaccc-tcca-atcatgctcagatttctgactaaggaactgtaaataaataaataagtgttgtttggtcaagcgtggtagctcatgcctgtaatcctaaggtttgtgggaatgacacaggaggattacttgcagccaggag--t
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74685648 175 + 122973662 aaaatgaaaacacagttttgggaagccttaaacagagaaccc-tcca-atcatgctcagatttctgactaaggaactgtaaataaataaat--gtgctgtttggtcaagcgtggtagctcatgcctgtaatcctaaggtttgtgagaatgatgcaggaggattacttgcagccaggag--t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30174459 179 + 172585720 aaaatgaaaacataattttgggaaaccctaaacagagaaccc-tcca-atcatgctcagatttctgactgaggaactgtaaacaaataagcaagtgttgtgtggtcaggcgtggtagctcatgcctgtaatcctaaggtttgtgggaatgacgcaggaggattacttgcagccaggagttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29837605 179 - 170955103 aaaatgaaaacataattttgggaaaccctaaacagagaaccc-tcca-atcatgctcagatttctgactgaggaactgtaaacaaataagcaagtgttgtgtggtcaggcgtggtagctcatgcctgtaatcctaaggtttgtgggaatgacgcaggaggattacttgcagccaggagttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2886886 179 -   2996164 aaaatgaaaacataattttgggaaaccctaaacagagaaccc-tcca-atcatgctcggatttctgactgaggaactgtaaacaaataaacaagtgttgtgtagtcaggcgtggtagctcatgcctgtaatcctaaggtttgtgggaatgacgcaggaggattacttgcagccaggagttt
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     635326 175 +    766320 aaaatgaaaacataattttgggaaaccctaaacagagaaccc-tcca-atcgtgctcggatttctgactgaggaactgtaaacaaa----caagtgttgtgtggtcaggcgtggtagctcatgcctgtaatcctaaggtttgtgggagtgacgcaggaggattacttgcagccaggagttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29091272 179 -  71996105 aaaatgaaaacataattttgggaaaccctaaacagagaaccc-tcca-atcacgctcagatttctgactgaggaactgtaaacaaataagcaagtgttgtgtggtcaggcgtggtagctcatgcctgtaatcctaaggtttgtgggaatgacgaaggaggattacttgcaaccaggagttt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2743856 179 -   3067355 aaaatgaaaacataattttgggaaaccctaaacagagaaccc-tcca-atcatgctcggatttctgaccaaggaactgtaaacaaataaacaagtattgtGTggttaggcgtggtagctcatgcctgtaatcctaaggtttgtgggaatgacgcaggaggattacttgcagccaggagttt
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364            21387 179 +    187130 aaaatgaaaacacagctttgagaagtccagaacggagattccatccacatcttgcccagacttctgactaaggaactataaacagctcaatgggtgtcgtttggccaggagtggtagtgcacgcctgtgatcctaacatttgaggagctgacacagggggatcacttgcagctaggag--t
i saiBol1.JH378364         C 0 I 2
s cebCap1.NW_016107755v1     392040 177 -   1771730 aaaatgaaaacacagctttgggaagtccagaac--agattccatccatatcttgcccagacttctgactaaggaactataaactgttcaatggatgttgtttggcctggaatggtagtgcacacctgtaatcctaacatttgaggagctgacacagggggatcacttggagccaggag--t
i cebCap1.NW_016107755v1   C 0 N 0
e otoGar3.GL873550         16735416  38 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=203039.000000
s hg38.chr6_GL000254v2_alt   983658 33 +   4827813 gagactagcctgggcaatttgaggagaccttcc
s panTro5.chr6             29946345 33 + 175400573 gagactagcctgggcaatttgaggagaccttcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30180015 33 + 173848474 gagactagcctgggcaatttgaggagaccttcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5980360 33 +   6154872 gagactagcctgggcaatttgaggagaccttcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74685823 33 + 122973662 gagaccagcctgggcaatttgcggagatcttcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30174638 33 + 172585720 gagactagcctgggcaatttgaggagaccttcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29837784 33 - 170955103 gagactagcctgggcaatttgaggagaccttcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2887065 33 -   2996164 gagactagcctgggcaatttgaggagaccttcc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     635501 33 +    766320 gagactagcctgggcaatttgaggagaccttct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29091451 33 -  71996105 gagactagccttggcaatttgaggagaccttcc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2744035 33 -   3067355 gagactagcctgggcaatttgaggagaccTTCC
i colAng1.NW_012115566v1   C 0 M 2194
s saiBol1.JH378364            21568 33 +    187130 gagaccagccaggataatgtagtgagacacttg
i saiBol1.JH378364         I 2 C 0
s cebCap1.NW_016107755v1     502460 32 -   1771730 cagactagcctgggcaatttgg-gagaccctcc
i cebCap1.NW_016107755v1   N 0 C 0
e otoGar3.GL873550         16735416 38 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30104189 1649 + 171630274 I

a score=71514.000000
s hg38.chr6_GL000254v2_alt   983691 21 +   4827813 tctctacaaaaaggaattttt
s panTro5.chr6             29946378 20 + 175400573 tctctacaaaaaggaa-tttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30180048 19 + 173848474 tctctacaaaaaggaa--ttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5980393 21 +   6154872 tctctacaaaaaggaattttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74685856 21 + 122973662 tctctacaaaaaggaattttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30174671 21 + 172585720 tctccacaaaaaaatttttct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29837817 21 - 170955103 tctccacaaaaaaatttttct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2887098 21 -   2996164 tctccacaaaaaaatttttct
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     635534 21 +    766320 tctccacaaaaaaatttttct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29091484 21 -  71996105 tctccacaaaaaaatttttct
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378364            21601 14 +    187130 tctctac-------aattttt
i saiBol1.JH378364         C 0 I 1
s cebCap1.NW_016107755v1     502492 21 -   1771730 tctctacaaaaaagaattttt
i cebCap1.NW_016107755v1   C 0 N 0
e otoGar3.GL873550         16735416 38 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30104189 1649 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=497963.000000
s hg38.chr6_GL000254v2_alt   983712 100 +   4827813 ttttttt--t---aatttacctgagcacggtggtacttgcctgtagtcccaggtactccagacactgaggcagggggacctctagaggccaggagtttgaggttg
s panTro5.chr6             29946398 100 + 175400573 ttttttt--t---aatttacctgagcacggtggtacttgcctgtagtcccagctactccagacactgaggcagggggacctctagaggccaggagtttgaggttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30180067 100 + 173848474 ttttttt--t---aatttacctgagcacggtggtacttgcctgtagtcccagctactccagacactgaggcagggggacctctagaggccaggagtttgaggttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5980414 100 +   6154872 ttttttt--t---aatttacctgagcacggtggtactcgcctgtagtcccagctactccagacactgaggcagggggacctctagaggccaggagtttgaggttg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74685877 103 + 122973662 ttttttt--tttaaatttacctgagcatggtggtacttgcctgtagtcctagctactccagacactgaggcagggggacctctagaggccaagagtttgaggttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30174692 101 + 172585720 ttttttt-aa---aatttacctgagcatggtggtacttgcctgtagtcctagctactccggagactgaggcaaggggacttctagaggccaggagtttgaggctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29837838 101 - 170955103 ttttttt-aa---aatttacctgagcatggtggtacttgcctgtagtcctagctactccggagactgaggcaaggggacttctagaggccaggagtttgaggctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2887119 100 -   2996164 ttttttt--t---aatttacctgagcatggtgatacttgcctgtagtcctagttactatgaagactgaggcaaggggacctctagaggccaggagtttgaggctg
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     635555 100 +    766320 ttttttt--t---aatttacctgagcatggtggtacttgcctgtagtcctagctactccggagactgaggcaaggggacctctagaggccaggagcttgaggctg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29091505 102 -  71996105 tttttttttt---aatttacctgagcatggtgatacttgcctgtagtcctagctactatgaagactgaggcaaggggacctctagaggccaggagtttgaggctg
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378364            21616 100 +    187130 ttttttt--t---aaattagctgggtgtggtggcacttgcctgctcttctagctgctctgaagactgaggcagtaggatcccttgagcccaggagtttgaggctg
i saiBol1.JH378364         I 1 C 0
s cebCap1.NW_016107755v1     356066 100 -   1771730 ttttttt--a---aaattagctgggaatggtggcacttgcctgcagtcctagctgctctgaagactgaggcagtagggtcccttgaacccaggagtttgaggctg
i cebCap1.NW_016107755v1   N 0 C 0
e otoGar3.GL873550         16735416  38 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30104189 1649 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=253348.000000
s hg38.chr6_GL000254v2_alt   983812 49 +   4827813 cagggaaccatgatcatgcaactgcacttcaccgtggataacagaggga
s panTro5.chr6             29946498 49 + 175400573 cagggaaccatgatcatgcaactgcacttcaccctggataacagaggga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30180167 49 + 173848474 cagggaaccatgatcatgcaactgcacttcaccctggataacagaggga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5980514 49 +   6154872 cagggaaccatgatcatgcaactgcacttcaccctggataacagaggga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74685980 49 + 122973662 cagggaaccatgatcatgcaactgcacttcaccctggataagagaggga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30174793 49 + 172585720 cagagaaccatgatcatgcaactgcactttaccctggataacagaagaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29837939 49 - 170955103 cagggaaccatgatcatgcaactgcactttaccctggataacagaagaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2887219 49 -   2996164 cggggaaccatgatcatgcaactgcactttaccctggataacagaagaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     635655 46 +    766320 cggggaaccatgatcatgcgactgcactttaccctggataac---agaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29091607 49 -  71996105 cagggaaccatgatcatgcaaatgcactttaccctggataacagaagaa
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378364            21716 49 +    187130 cagtgacccatgatcatgtgactgcactttaccctgtatgacagaggga
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     356166 49 -   1771730 cagtgagccatgatcatgtgactgcacttcaccctggatgacagaggga
i cebCap1.NW_016107755v1   C 0 I 36200
s otoGar3.GL873550         16735454 29 -  18854210 cagagaacc---------catccacaccatgcc-tggat----------
i otoGar3.GL873550         I 38 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30104189 1649 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=900725.000000
s hg38.chr6_GL000254v2_alt   983861 168 +   4827813 gaccatgtctctaaaaataaataaataaatacaataaatgggtgttgtttaaagccagt--gtttgtggtaatttgttatgcagtcatacaaaagtcatacaCAGACTCAACAGACA--CATGGAATGAATTTATAAATTGATAAGCACACTACATGAGTAAAATAAAATAT
s panTro5.chr6             29946547 168 + 175400573 gaccatgtctctaaaaataaataaataaatacaataaatgggtgttgtttaaagccaat--gtttgtggtaatttgttatgcagtcatataaaagtcatacaCAGACTCAACAGACA--CATGGAATGAATTTATAAATTGATAAGCACACTACATGAGTAAAATAAAATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30180216 168 + 173848474 gaccatgtctctaaaaataaataaataaatacaataaatgggtgttgtttaaagccagt--gtttgtggtaatttgttatgcagtcacataaaagtcatacaCAGACTCAACAGACA--CAtggaatgaatttataaattgataagcacactacatgagtaaaataaaatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5980563 168 +   6154872 gaccatgtctctaaaaataaataaataaatacaataaatgggtgttgtttaaagccagt--gtttgtggtaatttgttatgcagtcatataaaagtcatacaCAGACTCAACAGATA--CATGGAAAGAATTTATAAATTGATAAGCACACTACATGAGTAAAATAAAATAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74686029 168 + 122973662 gaccatgtctctacaaataaataaataaatataataaatgggtgttgtttaaagcccat--gtttgtggtaatttgttatgcagtcatataaaagtcatacaCAGACTCAACAGACA--CATGGAATGAATTTATAAATTGATAAGCACACTACATGTGTAAAATAAAATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30174842 164 + 172585720 ggccatgtgtctaaaaataaataaataa----aataaatgggtgctgtttaaagccaat--gtttgtggtaatttgttatgcagtcatataaaattcatacaCAGACTCAACAGACA--CAtggaatgaatttataaattgatatgcacactatatgcataaaataaaatat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29837988 164 - 170955103 ggccatgtgtctaaaaataaataaataa----aataaatgggtgctgtttaaagccaat--gtttgtggtaatttgttatgcagtcatataaaattcatacaCAGACTCAACAGACA--CATGGAATGAATTTATAAATTGATATGCACACTATATGCATAAAATAAAATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2887268 164 -   2996164 ggccatgtctctaaaaataaataaataa----aataaatgggtgctgtttaaagccaat--gtttgtggtaatttgttatgcagtcatataaaattcatacaCAGACTCAACAGACA--CAtggaatgactttataaattgatatgcacactacatgcataaaataaaatat
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     635701 164 +    766320 ggccacgtctctaaaaataaataaataa----aataaatgggtgctgtttaaagccaat--gtttgtggtaatttgttatgcagtcatataaaattcatataCAGACTCAACAGACA--CAtggaatgaatttataaattgatatgcacactatatgcataaaataaaatat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29091656 164 -  71996105 ggccatgtctctaaaaataaataaataa----aataaatgggtgctgtttaaagccaat--gtttgtggtaatttgttatgcagtcatataaaattcatacaCAGACTCAACAGACA--CATGGAATGAATTTATAAATTGATATGCACACTATATGCATAAAATAAAATAT
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378364            21765 166 +    187130 gactctgtctctaaaaataaataaaTCA--ACAATAAATGGGCATTGTTTAAGGCAAAT--ATTTGCGAAACTTTGTTACTCAGTCTTATAAAATTCATTTACAGGCTCAACAGACT--CACGAAATAAATTGATGAATTGATATGCACACTAGTTACATAAAATAAAATGT
i saiBol1.JH378364         C 0 I 1
s cebCap1.NW_016107755v1     392415 166 -   1771730 aactctgtctctaaaaataaataaatca--acaataaatgggcattgtttaaggcaaat--atttgcgaaaatttgttacccagtcttataaaattcatTAACAGGCTCAACAGACT--CATGGAATAAATTGATGAATTGATATGCACACTAGTTACATAAAATAAAATGT
i cebCap1.NW_016107755v1   I 36200 I 44
s otoGar3.GL873550         16735483 158 -  18854210 --------ttctaaggagcaataagcaa-----ataaatagccattgtttaaagacaataaatttgtggtaatttggtatactgaaatagaaaattaatacaCAAGCTCAAGAGATAAGCACATAATGTGTTT-TACACTGAAATGAATTTTACTTGCATGAAATAAAATCT
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30104189 1649 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=206873.000000
s hg38.chr6_GL000254v2_alt   984029 49 +   4827813 TTCCTTTTTCCAGTATTTTTCATTTTATAATATTCC-ATGATGCGATTAA
s panTro5.chr6             29946715 49 + 175400573 TTCATTTTTCCAGTATTTTTCATTTTATAATATTCC-ATGATGCGACTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30180384 49 + 173848474 ttcctttttccagtatttttcattttataatattcc-atgatgcgattaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5980731 49 +   6154872 TTCCTTTTTCCAGTATTTTTCATTTTATAATATTCC-ATGATGCGACTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74686197 49 + 122973662 TTCCTTTTTCCAGTATTTTTCATTTTATAATATTCC-ATGATGCGATTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30175006 49 + 172585720 ttcctttttccagtatttttcattttataattttct-gtgacgcaattaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29838152 49 - 170955103 TTCCTTTTTCCAGTATTTTTCATTTTATAATTTTCT-GTGATGCAATTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2887432 49 -   2996164 ttcctttttccagtatttttcattttataattttct-gtgatgcaattaa
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     635865 49 +    766320 ttcctttttccagtatttttcattttataattttct-gtgatgcaattaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29091820 49 -  71996105 TTCCTTTTTCCAGTATTTTTCATTTTATAATTTTCT-GTGATGCAATTAA
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378364            21932 43 +    187130 TTAACTTGGTTAGTGTTTTACATTTTGTAATTTTCT-GTGGTCC------
i saiBol1.JH378364         I 1 C 0
s otoGar3.GL873550         16735641 44 -  18854210 -TTCCTATTTTAGTATGTTTTAGTTTATGATTTTCAGGTGATTCA-----
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     392581 44 -   1771730 I
e calJac3.chr4             30104189 1649 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=365648.000000
s hg38.chr6_GL000254v2_alt   984078 65 +   4827813 ATTTTTATACAATCATATTTCattcaactagtcaacaaaaattaatttagtgcctatgctgaacc
s panTro5.chr6             29946764 65 + 175400573 ATTTTTATACAATCATATTTCATTCAACTAGTCAACAAAAATTAATTTAGTGCCTATGCTGAACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30180433 65 + 173848474 atttttatacaatcatatttcattcaactAGTCAACAAAAATTAATTTAGTGCCTATGCTGAACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5980780 65 +   6154872 ATTTTTATACAATCATATTTCattcaactagtcaacaaaaattaatttagtgcctatgctgaacc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74686246 65 + 122973662 ATTTTTATACAATCATATTTCattcaactagtcaataaaaattaatttagtgcctacgctgaacc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30175055 65 + 172585720 attttaatgcaatcatatttcatTCAACAGGTCAACAAAAATTAATTTAGTGCCTATGCTGAACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29838201 65 - 170955103 ATTTTAATGCAATCATATTTCATTCAACAGGTCAACAAAAATTAATTTAGTGCCTATGCTGAACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2887481 65 -   2996164 attttaatacaatcatatttcatTCAACCAGTCAATAAAAATTAATTTAGTGCCTATGCTGAACC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     635914 65 +    766320 attttaatacaatcatatttcatTCAACCGGTCAACAAAAATTAATTTAGTGCCTATGCTGAACC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29091869 65 -  71996105 ATTTTAATGCAATCATATTTCATTCAACTGGTCAACAAAAATTAATTTAGTGCCTATGCTGAACC
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378364            21975 65 +    187130 ATTTTAATACACTCATGTTTCAATCACTCAGTCAACAAAAATTAATTTAGTGCCTACACTGAACC
i saiBol1.JH378364         C 0 I 404
s cebCap1.NW_016107755v1     392625 65 -   1771730 ATTTTAATACACTCATGTTTCAAtcactcagtcaacaaaaattaatttagtgcctacgctgaacc
i cebCap1.NW_016107755v1   I 44 C 0
s otoGar3.GL873550         16735685 59 -  18854210 GTGTTATTGAAATCATa-ttcattcat----taaacggtaattaattta-ttcctattaggtatc
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30104189 1649 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=248705.000000
s hg38.chr6_GL000254v2_alt   984143 48 +   4827813 aggtATGCC-----------------------------------CTCATATGCTCAAGTGCCTGACATTCTAGAAGCTTCACA
s panTro5.chr6             29946829 48 + 175400573 AGGTATGCC-----------------------------------CTCATATGCTCAAGTGCCTGACATTCTAGAAGCTTCACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30180498 48 + 173848474 AGGTATGCC-----------------------------------CTCATATGCTCAAGTGCCTGACATTCTAGAAGCTTCACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5980845 48 +   6154872 aggtATGCC-----------------------------------CTCATATGCTCAAGTGCCTGACATTCTAGAAGCTTCACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74686311 48 + 122973662 aggtATGCC-----------------------------------CTCATATGCTCAAGTGCCTGACATTCTAGAAGCTTCACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30175120 48 + 172585720 AGGTATGCC-----------------------------------CTCATATGCTCAAGTGCCTGACATTCTAGATGCTTCACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29838266 48 - 170955103 AGGTATGCC-----------------------------------CTCATATGCTCAAGTGCCTGACATTCTAGATGCTTCACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2887546 48 -   2996164 AGGTATGCC-----------------------------------CTCATATGCTCAAGTGCCTGACATTCTAGATGCTTCACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     635979 48 +    766320 AGGTATGCC-----------------------------------CTCATATGCTCAAGTGCCTGACATTCTAGATGCTTCACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29091934 48 -  71996105 AGGTATGCC-----------------------------------CTCATATGCTCAAGTGCCTGACATTCTAGATGCTTCACA
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1     392690 48 -   1771730 aggtATGCC-----------------------------------CTCATATATTCATGTGCCTGACATTCTAGAAGCTTCACA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         16735744 83 -  18854210 aggaatgcctgtggggacacaattttgatcaaaacagcccaaagcccatatgctcatatgccttgtcttcctggggCTTTACT
i otoGar3.GL873550         C 0 C 0
e saiBol1.JH378364            22040 404 +    187130 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30104189 1649 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=75894.000000
s hg38.chr6_GL000254v2_alt   984191 16 +   4827813 AGACCgaagtggagcc
s panTro5.chr6             29946877 16 + 175400573 AGACCGAAGTGGAGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30180546 16 + 173848474 AGACCgaagtggagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5980893 16 +   6154872 AGACCgaagtggagcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74686359 16 + 122973662 Agactgaagtggagcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30175168 16 + 172585720 AGACCAAAGTggagcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29838314 16 - 170955103 AGACCAAAGTggagcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2887594 16 -   2996164 AGACCgaggtggagcc
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     636027 16 +    766320 AGACCgaggtggagcc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29091982 16 -  71996105 AGACCAAAGTggagcc
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30105838 16 + 171630274 agaccaaaatccaacc
i calJac3.chr4             I 1649 C 0
s cebCap1.NW_016107755v1     392738 11 -   1771730 AAATTGAGGTG-----
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         16735827 16 -  18854210 AGAGTGAGATGAAACT
i otoGar3.GL873550         C 0 C 0
e saiBol1.JH378364            22040 404 +    187130 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=3185378.000000
s hg38.chr6_GL000254v2_alt   984207 535 +   4827813 actggagtgttttaggtgaagaaacgacacactttgactcacagtagcag-------gac-------cactgt-ggAGAGAACACTCA--GGT-GGCAGGTAAT--GGAACAGTGCTAGAGCCACTATTCAGGAGTGACAGAGTGGTGGGGACTAAGGGAAGAGGAGGGCCTGAGGGATGAGAGGGACGGAGGGAAGGGCTGGAGAAGCAGGAGGTGA-GGAGAAGGAGCAGAGGGACAGAATTTGAAAGCAGCAGAATTCTTAGCTTTAAACACATTGTTTTATAAATTTTTAATACATCCATCTACAGAGCCTAGCAGGGTGTTCCTTGCATTTGGCCTTTAACACCTTATGTGGGACTGCCTAA-AAATTAAT-TGCTTTTTCT-GCTT--TTTTTCA----GGTTT-AAAAAAATACTAAGTGTTCCAATAAA-ACATGCACACCACTTAGATGCGGATACTTCCTAAAAACAGGAAGTGCATGAGCACTGGTGAGGGGCATTGTGACTGCGTTGAACACTTGCAACTTTGAGGTGAATGAA---TGTATTGGCTCCTGGTTGCAA
s panTro5.chr6             29946893 534 + 175400573 ACTGGAGTGTTTTAGGTGAAGAAACGACACACTTTGACTCACAGTAGCAG-------GAC-------CACTGT-GGAGAGAACACTCA--GGT-GGCAGGTAAT--GGAACAGTGCTAGAGCCACTATTCAGGAGTGACAGAGTGGTGGGGACTAAGGGAAGAGGAGGGCCTGAGGGATGAGAAGGACGGAGGGAAGGGCTGGAGAAGCAGGAGGTGA-GGAGAAGGAGCAGAGGGACAGAATTTGAAAGCAGCAGAATTCTTAGCTTTAAACACATTGTTTTATAAATTTTTAATACATCCATCTACAGAGCCTAGCAGGGTGTTCCTTGCATTTGGCCTTTAACACCGTATGTGGGACTGCCTAA-AAATTAAT-TGCTTTTTCT-GCTT--TTTTTCA----GG-TT-AAAAAAATACTAAGTGTTCCAATACA-ACATGCACACCACTTAGATGCGGATACTTCCTAAAAACAGGAAGTGCATGAGCACTGGTGAGGGGCATTGTGACTGCGTTGAACACTTGCAACTTTGAGGTGAATGAA---TGTATTGGCTCCTGGTTGCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30180562 534 + 173848474 actggagtgttttaggtgaagaaacgacacactttgactcacagtagcag-------gac-------cactgt-ggAGAGAACACTCA--GGT-GGCAGGTAAT--GGAACAGTGCTAGAGCCACTATTCAGGAGTGACAGAGTGGTGGGGACTAAGGGAAGAGGAGGGCCTGAGGGATGAGAGAGACGGAGGGAAGGGCTGGAGAAGCAGGAGGTGA-GGAGAAGGAGCAGAGGGACAGAATTTGAAAGCAGCAGAATTCTTAGCTTTAAACACATTGTTTTATAAATTTTTAATACATCCATCTACAGAGCCTAGCAGGGTGTTCCTTGCATTTGGCCTTTAACACTGTATGTGGGACTGCCTAA-AAATTAAT-TGCTTTTTCT-GCTT--TTTTTCA----GG-TT-AAAAAAATACTAAGTGTTCCAATAAA-ACATGCACACCACTTAGATGCAGATACTTCCTAAAAACAGGAAGTGCATGAGCACTGGTGAGGGGCATTGTGACTGCGTTGAACACTTGCAACTTTGAGGTGAATGAA---TGTATTGGCTCCTGGTTGCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5980909 535 +   6154872 actggagtgttttaggtgaagaaacgacacactttgactcacagtagcag-------gac-------cactgt-ggAGAGAACACTCA--GGT-AGCAGGTAAT--GGAACAGTGCTAGAGCCACTATTCAGGAGTGACAGAGTGGTGGGGACTAAGGGAAGAGGAGGGCCTGAGGGATGAGAGGGACGGAGGGAAGGGCTGGAGAAGCAGGAGGTGA-GGAGAAGGAGCAGAGGGACAGAATTTGAAAGCAGCAGAATTCTTAGCTTTAAACACATTGTTTTATAAATTTTTAATACATCCATCTACAGAGCCTAGCAGGGTGTTCCTTGCATTTGGCCTTTAACACCGTATGTGGGACTGCCTAA-AAATTAAT-TGCTTTTTCT-GCCT--TTTTTCA----GGTTT-AAAAAAATACGAAGTGTTCCAATAAA-ACATGCACACCACTTAGATGCGGATACTTCCTAAAAACAGGAAGTGCATGAGCACTGGTGAGGGGCATTGTGACTGCGTTGAACACTTGCAACTTTGAGGTGAATGAA---TGTATTGGCTCCTGGTTGCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74686375 535 + 122973662 actggagtgttttaggtgaagaaatgacacactctgactcacagtagcag-------gac-------cactgt-ggAGAGAACACTCA--GGT-GGCAGGTAAT--GGAACAGTGCTAGAGCCACTATTCAGGAGTGACAGGGTGGTGGGGACTAAGGGAAGAGGAGGGCCTGAGGGATGAGAGGGACGGAGGGAAGGGCTGGAGAAGCGGGAGGTGA-GGAGAGGGAGCAGAGGGACAGAATTTGAAAGCAGCAGAATTCTTAGCTTTAAACACATTGTTTTATAAATTTTTAATACATCCATCTACAGAGCCTAGCAGGGTGTTCCTTGCATTTGGCCTTTAACACCGTATGTGGGACTGCCTAA-AAATTAAT-TGCTTTTTCT-GCTT--TTTTTCA----GGTTT-AAAAAAATACTAAGGGTTCCAATAAA-ATATGCACAGCACTTAGATGCGGATACTTTCTAAAAACAGGAAGTGCATGAGCAGTGGTGAGGGGCATTGTGACTGCGTTGAACACTTGCAACTTTGAGGTGAATGAA---TGTACTGGCTCCTGGTTGCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30175184 523 + 172585720 actggagtgttttaggtgaagaaacgacacactgtgactcgcagtagcag-------gac----------------------cactca--ggt-ggcAGGTCAT--GGGACAGTGCTAGAGCCACAATTCGGGAGTGACAGGGTGGTGGGGACTAAGGGGAGAGGAGGGCCTGAGGGATGAGAGGGATGGAGGGAAGGGCTGGAGAAGCAGGAGGTGA-GGAAAAGGAGCAGAGGGACAGAATTTGAAAGCGGCAGAATTCTTAGGTTTAAACACATTGTTTTATAAATTTTTAATACATCCATCTACAGAGCTTAGCAGGGTGTTCCTTACATTTGGCCTTTAACACCACATGCGGGACTGCCAAA-AAATTAAT-TGCTTTTTCT-GCTTTATTTTTCA----GGTTT-AAAGAAATACTAGGTGTTCCAATAAA-ATATGCACACCACTTAGATGCAGATACCTCCTAAAAACAGGAAGTGCATGAGCACTGGTGAGGGGCATTGTGACTGCCTTGAACACTTGCAACTTTGAGGTGAATGAA---TGCACTGGCTTCTGGTTGCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29838330 523 - 170955103 actggagtgttttaggtgaagaaacgacacactgtgactcgcagtagcag-------gac----------------------cactca--ggt-ggcAGGTCAT--GGGACAGTGCTAGAGCCACAATTCGGGAGTGACAGGGTGGTGGGGACTAAGGGGAGAGGAGGGCCTGAGGGATGAGAGGGATGGAGGGAAGGGCTGGAGAAGCAGGAGGTGA-GGAAAAGGAGCAGAGGGACAGAATTTGAAAGCGGCAGAATTCTTAGGTTTAAACACATTGTTTTATAAATTTTTAATACATCCATCTACAGAGCTTAGCAGGGTGTTCCTTACATTTGGCCTTTAACACCACATGCGGGACTGCCAAA-AAATTAAT-TGCTTTTTCT-GCTTTATTTTTCA----GGTTT-AAAAAAATACTAGGTGTTCCAATAAA-ATATGCACACCACTTAGATGCAGATACCTCCTAAAAACAGGAAGTGCATGAGCACTGGTGAGGGGCATTGTGACTGCATTGAACACTTGCAACTTTGAGGTGAATGAA---TGCACTGGCTCCTGGTTGCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2887610 523 -   2996164 actggagtgttttaggtgaagaaacgacacactgtggctcgcagtagcag-------gac----------------------cactca--ggt-agcAGGTCAT--GGGACAGTGCTAGAGCCACAATTCAGGAGTGACAGGGTGGTGGGGACTAAGGGGAGAGGAGGGCCTGAGGGATGAGAGGGATGGAGGGAAGGGCTGGAGAAGCAGGAGGTGA-GGAAAAGGAGCAGAGGGACAGAATTTGAAAGCGGCAGAATTCTTAGGTTTAAACACATTGTTTTATAAATTTTTAATACATCCATCTATAGAGCCTAGCAGGGTGTTCCTTACATTTGGCCTTTAACACCACATGCGGGACTGCCAAA-AAATTAAT-TGCTTTTTCT-GCTTTATTTTTCA----GGTTT-AAAAAAATACTAGGTGTTCCAATAAA-ATATGCACACCACTTAGATGCAGATACCTCCTAAAAACAGGAAGTGCATGAGCACTGGTGAGGGGCATTGTGACTGCATTGAACACTTGCAACTTTGAGGTGAATGAA---TGCACTGGCTCCTGGTTGCAA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     636043 524 +    766320 actggagtgttttaggtgaagaaacgacacactgtgactcgcagtagcag-------gac----------------------cactca--ggt-ggcAGGCCAT--GGGACAGTGCTAGAGCCACAATTCTGGAGTGACAGGGTGGTGGGGACTAAGGGGAGAGGAGCGCCTGAGGGATGAGAGGGATGGAGGGAAGGGCTGGAGAAGCAGGAGGTGA-GGAAAAGGAGCAGAGGGACAGAATTTGAAAGCGGCAGAATTCTTAGGTTTAAACACATTGTTTTATAAATTTTTAATACATCCATCTATAGAGCCTAGCAGGGTGTTCCTTACATTTGGCCTTTAACACCACATGCAGGACTGCCAAA-AAATTAAT-TGCTTTTTCT-GCTTTATTTTTCA----GGTTTAAAAAAAATACTAGGTGTTCCAATAAA-ATATGCACACCACTTAGATGTAGATACTTCCTAAAAACAGGAAGTGCATGAGCACTGGTGAGGGGCATTGTGACTGCGTGGAACACTTGCAACTTTGAGGTGAATGAA---TGCACTGGCTCCTGGTTGCAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29091998 523 -  71996105 actggagtgttttaggtgaagaaacgacacactgtgactcgcagtagcag-------gac----------------------cactca--ggt-ggcAGGTCAT--GGGACAGTGCTAGAGCCACAATTCGGGAGTGACAGGGTGGTGGGGACTAAGGGGAGAGGAGGGCCTGAGGGATGAGAGGGATGGAGGGAAGGGCTGGAGAAGCAGGAGGTGA-GGAAAAGGAGCAGAGGGACAGAATTTGAAAGCAGCAGAATTCTTAGGTTTAAACACATTGTTTTGTAAATTTTTAATACATCCATCTACAGAGCCTAGCAGGGTGTTTCTTACATTTGGCCTTTAACACCACATGCGGGACTGCCAAA-AAATTAAT-TGCTTTTTCT-GCTTTGTTTTTCA----GGTTT-AAAAAAATACTAGGTGTTCCAATAAA-ATATGCATACCACTTAGATGTAGATACTTCCTAAAAACAGGAAGCGCATGAGCACTGGAGAGGGGCATTGTGACTGCGTTGAACACTTGCAACTTTGAGGTGAATGAA---TGCACTGGCTCCTGGTTGCAA
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30105854 480 + 171630274 --------aCTGTAAGTGAAGAAATGACACGACCTGAGTCACATTAGCAAAACTGCTGAG-------CACTAC-GGGGAG--AACAGA--CATGGGCAGGAAGTGAGGGACAGTGTTAGTGCCACAATTCAGGAGTGACAGGGTGGCAGGGACTAAGGGGAGAAAAGGGTGTGAGGGATGACAGGGGCAGAGAGAAGGGCTGGAGAAGCAGGAGGTGA-GGAAAAGGGGCAGAG-----------------------------------GAA-------------AGAATTCTAAAG----CAGTGGAAGAGCCTAGCAGGGGGTTCTTT-TCATTAGTATTTAATGCATTTTGTGGGACTTCCTGA-AAACTAATGTCCTCTTTATGA-----TTAAAAAAAATGGGTT--AGAAAATACCAAGTGTTCAAATAAA-ACATACTCATTGCTTGGGTGTGTGTAGCTCAGGAAAACAGGAAGTGCTTGAGCGCTGGTGAAGAGCATTGAGACTGCATGGAGCTCTCACAACTCTGAG-----TGCTGAC--TACAGGCTCCCGGTTGCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378364            22444 509 +    187130 attgaggtgttttatgtggagaAATGACAAACTCTGATTCACAGTAGCAG-------GAT-------CACTAC-GGAGAG--AAGTCA--CAT-AGCAGGTAAT--GGTACAGTGCTAGAGCCACTATTCGGGAGTGACAGCGTGGTGGGGAATAAAGGGAGAGGAAGGGCTGAGGGATGAGAAGGATGGAGGGAAGGGCTGGAGAAGCAGGAAAGAATTGGAAAGCAGTAGAA------------------------TTCTTAGTTTTGAACACATTGTTTTGCAGATTTTTAACACATCCATCTACAGAGCCTAGCAGGGTGTTCTTCGTAGTTGGCCTTTAATACCTTATGTAGGTCTGCCTAA-AAGCTAAT-TGTTTCTTAT-A-----TTAATCA----GGTTT--AAAAAATACTGAGTGTTCCTATAAA-ATAAGCACACCACTTAGATGTGGACACTTCCTAAAAACAGGCAATACATGAGCACTGGTGAGGGGCATTGTGACTGCATTGAACACTTGAGATTGTGAGGTGAATGAAGTCTGTACCGGCTCCTGGTTGCAA
i saiBol1.JH378364         I 404 C 0
s cebCap1.NW_016107755v1     392749 523 -   1771730 ----------TTTATGTGGAGAAATGACAAACTCTGATTCACAGTAGCAG-------GAT-------CACTAT-GGAGAG--AAGTCAT-CAT-AGTAGGTAAT--GGGACAGTGCTAGAGCCACTATTCGGGAGTGACAGGGTGGTGTGGAATAAAGggagaggaaggcctgagggacgagagggatggagggaagggctggagaagcaggaggtga-ggagaaggagcagaggGAAAGAATTTGAAGGCAGCAGAATTCTCAGGTTTAAACACATTTTTTTATAGATTTTTAACACATCCATCTACAGAGCCTAGCAGGGTGTTCTTTGCAGTTGGGCTTTAATACCTTATGTAGGTCTGCCTAA-AGACTAAT-TGTTTCTTAT-G-----TTAATCA----GGTTT--AAAAAATACTAAGTGTTCCTATAAA-ATAAATACACCACTCAGATGCGGACACTTCCTAAAAACAGGCAGTGCATGAGCACTGGTGGGGGGCATTGTCACTGCACTGAACACTTGCGACTGTGAGGTGAATGAAGTCTGTACTGGCTCCTGGTTGCAA
i cebCap1.NW_016107755v1   C 0 I 12
s otoGar3.GL873550         16735843 521 -  18854210 GTTGGAGCATTTTAAGTGAAGAAATGATAAAATCTGACTT-TAGTAGCAG-------GACTGGTGACCACTGCGGGGGAGAACAGTTGTGGGC-AGCAGGGGA---GGGACAAGGCTAGTGCCACAGTTCAGGGGTGACAG-GTGGTG-GGACTAAGGGGAGAAG-GGTTCTGAGGGATGAAAGGGACAGAGGGAAGGGCCAGAGAAGCAGTAGGGGA-GGAACAATATCAGAGGGAAAGAATTGTAAAGCAGCTGAATTCTCAGATTTAAATACAGTGTTTTATAGATTTTTAATA----------CAGAGCCTAGCAGGGTGCTCTTTGCATTTGGTAATTAATAC-ATTTGCAGGGCTACCTAAGAAGGTAAT-T--TCCTACT-AATA--TTAATTA----TGTTA----AAAATACCAAGTATCCTCTTGAACATATACACACAGCTTAGATGTGAATAATTCAATAAAACAGGCACTGCACGTGCACAGGTGAA-AGCATTTTGACT-----GAGCACGTGCAGCTTTGAAGTGGTTAAAG--TTCTACAACTCCCGGTTGAAA
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=161966.000000
s hg38.chr6_GL000254v2_alt   984742 39 +   4827813 TATACAATCACACGTTGTGCTACTTTGTATTGTCAGGAG
s panTro5.chr6             29947427 39 + 175400573 TATACAATAACACGTTGTGCTACTTTGTATTGTCAGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181096 39 + 173848474 TATACAATAACACGTTGTGCTACTTTGTATTGTCAGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5981444 39 +   6154872 TATACAATAACACGTTGTGCTACTTTGTATTGTCAGGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74686910 39 + 122973662 TATACGATAACACATTGTGCTACTTTGTATTGTCAGGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30175707 34 + 172585720 CATACAATAACACATTGTGCTACTTTGTATT-----GAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29838853 34 - 170955103 CATACAATAACACATTGTGCTACTTTGTATT-----GAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888133 37 -   2996164 CATACAATAACACATTGTGCTACTTTGTATTG--AGGAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     636567 37 +    766320 CATACAATAACACATTGTGCTACTTTGTATTG--AGGAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29092521 37 -  71996105 CATACAATAACACATTGTGCTACTTTGTATTG--AGGAG
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30106334 33 + 171630274 TATACAGTAACA-AACCTGCTTCTTTGTATT-----CAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378364            22953 36 +    187130 CATAC-GTAACACAGTGTGATGCTTTGTACTG--CGGAG
i saiBol1.JH378364         C 0 C 0
s otoGar3.GL873550         16736364 36 -  18854210 TACAGAGTCACAAATTGTGCTTCTTTGTGTG---AGGAA
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393272 12 -   1771730 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=833200.000000
s hg38.chr6_GL000254v2_alt   984781 139 +   4827813 ATGTCCTGGACTCCCA--CA--GAAACTCAGGGCTATGGAATGAAGGTAATTTTAGAATACAACAA----GAGTCACAGATACATAGTCTGGGAAAGCAAAACTTAGGAGCTCTGAGAGTTGTACAACTGTAATGCA-TTTAGACACA
s panTro5.chr6             29947466 139 + 175400573 ATGTCCTGGACTCCCA--CA--GAAACTCAGGGCTATGGAATGAAGGTAATTTTAGAATACAACAA----GAGTCACAGATACATAGTCTGGGAAAGCAAAACTTAGGAGCTCTGAGAGTTGTACAACTGTAATGCA-TTTAGACACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181135 139 + 173848474 ATGTCCTGGACTCCCA--CA--GAAACTCAGGGCTATGGAATGAAGGTAATTTTAGAATACAACAA----GAGTCACAGATACATAGTCTGGGAAAGCAAAACTTAGGAGCTCTGAGAGTTGTACAACTGTAATGCA-TTTAGACACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5981483 139 +   6154872 ATGTCCTGGACTCCCA--CA--GAAACTCAGGGCTATGGAATGAAGGTAATTTTAGAATACAACAA----GAGTCACAGATACATAGTCTGGGAAAGCAAAACTTAGGAGCTCTGAGAGTTGTACAACTGTAATGCA-TTTAGACACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74686949 138 + 122973662 ATATCCTGGACTCACA--CA--GAAACTCAGGGCTATGGAATGAAGGTAATTTTAGAATACAACAA----GAGTCACACATACATAGTCTGGGAAAGCAAAACTTAGGAGCTCTGCAAGTTGT-CAGTTGTAATGCA-TTTAGACAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30175741 136 + 172585720 ATGTCCTGGACTCACA--CA--GAAACTCAGGGCTATGGAATGAAGGTAATTTTAGAATACAACAA----GA--TACAGATACATAGTCTGGGAAAGCAAAACTTAGGAGCTCTGCGAGTTGT-CAGTTGTAATGCA-TTTAGACACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29838887 136 - 170955103 ATGTCCTGGACTCACA--CA--GAAACTCAGGGCTATGGAATGAAGGTAATTTTAGAATACAACAA----AA--TACAGATACATAGTCTGGGAAAGCAAAACTTAGGAGCTCTGCGAGTTGT-CAGTTGTAATGCA-TTTAGACACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888170 136 -   2996164 ATGTCCTGGACTCACA--CA--GAAACTCAGGGCTATAGAATGAAGGTAATTTTAGAATACAACAA----AA--TACAGATACATAGTCTGGGAAAGCAAAACTTAGGAGCTCTGCGAGTTGT-CAGTTGTAATGCA-TTTAGACACA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     636604 136 +    766320 ATGTCCTGGACTCACA--CA--GAAACTCAGGGCTATAGAATGAAGGTAATTTTAGAATACAACAA----AA--TACAGATACATAGTCTGGGAAAGCAAAACTTAGGAGCTCTGCGAGTTGT-CAGTTGTAATGCA-TTTAGACACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29092558 136 -  71996105 ATGTCCTGGACTCACA--CA--GAAACTCAGGGATACGGAATGAAGGTAATTTTAGAATACAACAA----GA--TACAGATACATAGTCTGGGAAAGCAAAACTTAGGAGCTCTGCGAGTTGT-CAGTTGTAACGTA-TTTAGACACA
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30106367 139 + 171630274 ACGTTCTGGACTCACA--CAGGGAAACT---GATTAGGGAATGGTGAT-AATTTTAAATGTAAGAACCCAGAGTCACAGATCCATAGTCTAGGAAGGTAAAACTTAGGAGCTTTGAGAGTT---TAACTGTAATTCTGTTTTGACACA
i calJac3.chr4             C 0 I 19
s saiBol1.JH378364            22989 138 +    187130 ATGTCCTGGACTCACA--CA--GAAACTCAGGGCTATGGAGTAAAGGTAAATTTAAAATACAACAATCAGGAGTCACAGATACATTGTCTGGGAAAGTGAAAC--AGGAACTTTATGAGTC---CTGTTCTAATGCT-TTTAGACACA
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     393284 138 -   1771730 ATGTCCTGGACTCACG--CA--GAAACTCAGGTCTATGGAGTAAAGGTAAATTTAAAATACAACAAGCGGGAGTCACAGATACATTGTCTGGGAAGGTGAAAC--AGGAGCTTTGTGAGTC---CTGTTGTAATGCT-TTTAGACACA
i cebCap1.NW_016107755v1   I 12 C 0
s otoGar3.GL873550         16736400 141 -  18854210 ATGTCCTGCACTCTCAAGTA--TAGACTAAGGGCTGTGGAATGAAGATAGATTTA-AATACAACAACTCAGAATCCAAGTTACATAGTCGAGGAAAGTAAAACTCGGGAGCTTCGTGAGTC---TAGTTGTAATGAG-TTTAGACACC
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=188102.000000
s hg38.chr6_GL000254v2_alt   984920 33 +   4827813 TTTATATATCAAGGGGCCAAAGTAACAGTTTTT
s panTro5.chr6             29947605 33 + 175400573 TTTATATATCAAGGGGCCAAAGTAACAGTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181274 33 + 173848474 TTTATATATCAAGGGGCCAAAGTAACAGTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5981622 33 +   6154872 TTTATATATCAAGGGGCCAAAGTAACAGTTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687087 33 + 122973662 TTTATATATCGAGGGGCCAAAGTAACATTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30175877 33 + 172585720 TTTACATATCAAGGGGACAAAGTAACATTTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29839023 33 - 170955103 TTTACATATCAAGGGGACAAAGTAACATTTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888306 33 -   2996164 TTTACATATCAAGGGGACAAAGTAACATTTTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     636740 33 +    766320 TTTACGTATCAAGGGGACAAAGTAACATTTTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29092694 33 -  71996105 TTTACTTATCAAGGGGACAAAGTAACATTTTTT
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378364            23127 33 +    187130 TTTATATATCAAGGGGCCAAAGTCACATTTTTT
i saiBol1.JH378364         C 0 I 6
s cebCap1.NW_016107755v1     393422 33 -   1771730 TTTATATATGAAGGGGCCAAAGTCACATTTTTT
i cebCap1.NW_016107755v1   C 0 I 14
s otoGar3.GL873550         16736541 33 -  18854210 TTGCTCTATCAAGGGGCCACAATCACTTCTGTT
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30106506 19 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=47090.000000
s hg38.chr6_GL000254v2_alt   984953 10 +   4827813 ACACATAAGA
s panTro5.chr6             29947638 10 + 175400573 ACACATAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181307 10 + 173848474 ACACATAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5981655 10 +   6154872 ACACATAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687120 10 + 122973662 ACACTTAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30175910 10 + 172585720 ACACATAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29839056 10 - 170955103 ACACATAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888339 10 -   2996164 ACACATAAGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     636773 10 +    766320 ACACATAAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29092727 10 -  71996105 ACACATAAGA
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378364            23166 10 +    187130 ACCAATTAGG
i saiBol1.JH378364         I 6 C 0
s otoGar3.GL873550         16736574 10 -  18854210 ACAGATTAGA
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393455 14 -   1771730 I
e calJac3.chr4             30106506 19 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=36520.000000
s hg38.chr6_GL000254v2_alt   984963 7 +   4827813 TTCCTGA
s panTro5.chr6             29947648 7 + 175400573 TTCCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181317 7 + 173848474 TTCCTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5981665 7 +   6154872 TTCCTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687130 7 + 122973662 TTCCTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30175920 7 + 172585720 TTCCTGA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888349 7 -   2996164 TTCCTGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     636783 7 +    766320 TTCCTGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29092737 7 -  71996105 TTCCTGA
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378364            23176 7 +    187130 TTCCTGA
i saiBol1.JH378364         C 0 C 0
s otoGar3.GL873550         16736584 7 -  18854210 TTCCTGA
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393455 14 -   1771730 I
e calJac3.chr4             30106506 19 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e macFas5.chr4             29839066 0 - 170955103 C

a score=2611.000000
s hg38.chr6_GL000254v2_alt   984970 2 +   4827813 TT
s panTro5.chr6             29947655 2 + 175400573 TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181324 2 + 173848474 TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5981672 2 +   6154872 TT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687137 2 + 122973662 TT
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378364            23183 2 +    187130 TC
i saiBol1.JH378364         C 0 C 0
s otoGar3.GL873550         16736591 2 -  18854210 TC
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393455 14 -   1771730 I
e calJac3.chr4             30106506 19 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e chlSab2.chr17            29092744 0 -  71996105 C
e cerAty1.NW_012002711v1     636790 0 +    766320 C
e macNem1.NW_012011356v1    2888356 0 -   2996164 C
e macFas5.chr4             29839066 0 - 170955103 C
e rheMac8.chr4             30175927 0 + 172585720 C

a score=7833.000000
s hg38.chr6_GL000254v2_alt   984972 9 +   4827813 ggtcgggcg
s panTro5.chr6             29947657 9 + 175400573 ggtcgggcg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181326 9 + 173848474 ggtcgggcg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5981674 9 +   6154872 ggtcgggcg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687139 9 + 122973662 GATcaggtg
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873550         16736593 9 -  18854210 ACTGAGGTG
i otoGar3.GL873550         C 0 I 98
e saiBol1.JH378364            23185 0 +    187130 C
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393455 14 -   1771730 I
e calJac3.chr4             30106506 19 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e chlSab2.chr17            29092744 0 -  71996105 C
e cerAty1.NW_012002711v1     636790 0 +    766320 C
e macNem1.NW_012011356v1    2888356 0 -   2996164 C
e macFas5.chr4             29839066 0 - 170955103 C
e rheMac8.chr4             30175927 0 + 172585720 C

a score=241274.000000
s hg38.chr6_GL000254v2_alt   984981 284 +   4827813 cggtggctcatgcctgtaattgcagcactttgggaggccgaggcgggaggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaa-cccgtctc---------tacaaaaaaattagccgggcgtggtggcgggcatctgtagtctcagctactcgggaggctgaagcagaagaatggcgtgaacccgggacgcagagcttgcagtgagccgagatcgcgccactgcactccagcctgggcggcagagagagactccgtctc--aaaaaaaaaaaaaaaaaaaaa
s panTro5.chr6             29947666 281 + 175400573 cggtggctcatgcctgtaatcgcagcactttgggaggccgagacgggaggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaa-cccgtctc---------tacaaaaaaattagccgggcatggtggcgggcatctgtagtctcagctactcgggaggctgaagcagaagaatggcgtgaacccgggatgcagagcttgcagtgagccgagatcgcgccactgcactccagcctgggcggcagagagagactccgtctc-----aaaaaaaaaaaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181335 283 + 173848474 cggtggctcatgcctgtaattgcagcactttgggaggccgaggcgggaggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaa-cccgtctc---------tacaaaaaaattagccggtcatggtggcgggcatctgtagtctcagctactcgggaggctgaagcagaagaatggcgtgaacccgggaggcagagcttgcagtgagccgagatcgcgccactgcactccagcctgggcggcagagagagactccgtctc---aaaaaaaaaaaaaaaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5981683 284 +   6154872 cggtggctcatgcctgtaatcgcagcactttgggaggccgaggcgggaggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaa-cccgtctc---------tacaaaaaaattagccgggcgtggtggcgggcatctgtagtctcagctactcgggaggctgaagcagaggaatggcgtgaacccgggaggcagagcttgcagtgagccgagatcgcgccactgcactccagcctgggcggc--agagagactccgtctcaaaaaaaaaaaaaaaaaaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687148 289 + 122973662 cggtggctcatgcctgtaatcccagcactttgggaggccgaagcgggaggatcaagaggtcaggaaatcgagaccatcttggctaacacagtaaaaccccgtctctactaaaaatacaaaaaacttagctgggcgtggtggcgggcacctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccaggaggcgaagcttgcagtgagccgagatcgcgccactgcactctagcctgggcgac--agcgagactccgtctc-----aaaaaaaaaaaaaaaaaa
i nomLeu3.chr1a            C 0 C 0
e saiBol1.JH378364            23185   0 +    187130 C
e otoGar3.GL873550         16736602  98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393455  14 -   1771730 I
e calJac3.chr4             30106506  19 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e chlSab2.chr17            29092744   0 -  71996105 C
e cerAty1.NW_012002711v1     636790   0 +    766320 C
e macNem1.NW_012011356v1    2888356   0 -   2996164 C
e macFas5.chr4             29839066   0 - 170955103 C
e rheMac8.chr4             30175927   0 + 172585720 C

a score=3263.000000
s hg38.chr6_GL000254v2_alt   985265 3 +   4827813 aGG
s panTro5.chr6             29947947 3 + 175400573 aGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181618 3 + 173848474 aGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5981967 3 +   6154872 aGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687437 3 + 122973662 aGA
i nomLeu3.chr1a            C 0 C 0
s cebCap1.NW_016107755v1     393469 3 -   1771730 AGG
i cebCap1.NW_016107755v1   I 14 C 0
e saiBol1.JH378364            23185 0 +    187130 C
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30106506 19 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e chlSab2.chr17            29092744 0 -  71996105 C
e cerAty1.NW_012002711v1     636790 0 +    766320 C
e macNem1.NW_012011356v1    2888356 0 -   2996164 C
e macFas5.chr4             29839066 0 - 170955103 C
e rheMac8.chr4             30175927 0 + 172585720 C

a score=1911.000000
s hg38.chr6_GL000254v2_alt   985268 1 +   4827813 T
s panTro5.chr6             29947950 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181621 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5981970 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687440 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29839066 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s cebCap1.NW_016107755v1     393472 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
e saiBol1.JH378364            23185 0 +    187130 C
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30106506 19 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e chlSab2.chr17            29092744 0 -  71996105 C
e cerAty1.NW_012002711v1     636790 0 +    766320 C
e macNem1.NW_012011356v1    2888356 0 -   2996164 C
e rheMac8.chr4             30175927 0 + 172585720 C

a score=15127.000000
s hg38.chr6_GL000254v2_alt   985269 6 +   4827813 TCCTGA
s panTro5.chr6             29947951 6 + 175400573 TCCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181622 6 + 173848474 TCCTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5981971 6 +   6154872 TCCTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687441 6 + 122973662 TCCTGA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29839067 6 - 170955103 TCCTGA
i macFas5.chr4             C 0 C 0
s calJac3.chr4             30106525 6 + 171630274 TCCTAA
i calJac3.chr4             I 19 C 0
s cebCap1.NW_016107755v1     393473 6 -   1771730 TCCTGA
i cebCap1.NW_016107755v1   C 0 C 0
e saiBol1.JH378364            23185 0 +    187130 C
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e chlSab2.chr17            29092744 0 -  71996105 C
e cerAty1.NW_012002711v1     636790 0 +    766320 C
e macNem1.NW_012011356v1    2888356 0 -   2996164 C
e rheMac8.chr4             30175927 0 + 172585720 C

a score=7921.000000
s hg38.chr6_GL000254v2_alt   985275 2 +   4827813 TA
s panTro5.chr6             29947957 2 + 175400573 TA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181628 2 + 173848474 TA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5981977 2 +   6154872 TA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687447 2 + 122973662 TA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30175927 2 + 172585720 TA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29839073 2 - 170955103 TA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888356 2 -   2996164 TA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     636790 2 +    766320 TA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29092744 2 -  71996105 TA
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30106531 2 + 171630274 TC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     393479 2 -   1771730 TC
i cebCap1.NW_016107755v1   C 0 C 0
e saiBol1.JH378364            23185 0 +    187130 C
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=235328.000000
s hg38.chr6_GL000254v2_alt   985277 46 +   4827813 ATTCAGGGGTTACCAAGATTCTACTACTCACTGCAGCTaataaaaa--
s panTro5.chr6             29947959 41 + 175400573 ATTCAGGGGTTACCAAGATTCTACTACTCACTGCAGCTAAT-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181630 41 + 173848474 ATTCAGGGGTTACCAAGATTCTACTACTCACTGCAGCTAAT-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5981979 44 +   6154872 ATTCAGGGGTTACCAAGATTCTACTACTCACTGCAGCTaat--aaa--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687449 41 + 122973662 ATTCAGGGGTTACCAAGATTCTACTACTCACTGCAGCCAAT-------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30175929 44 + 172585720 ATTCAGGGGTTACCAAGATTCTACTACTCACTGCAGCTAAT--AAA--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29839075 44 - 170955103 ATTTAGGGGTTACCAAGATTCTACTACTCACTGCAGCTAAT--AAA--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888358 44 -   2996164 ATTCAGGGGTTACCAAGGTTCTACTACTCACTGCAGCTAAT--AAA--
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     636792 44 +    766320 ATTCAGGGGTTACCAAGGTTCTACTACTCACTGCAGCTAAT--AAA--
i cerAty1.NW_012002711v1   C 0 I 3
s chlSab2.chr17            29092746 44 -  71996105 ATTTAGGGGTTACCAAGATTCTACGACTCACTGCAGCTAAT--AAA--
i chlSab2.chr17            C 0 I 3
s calJac3.chr4             30106533 45 + 171630274 ATTCAGAGATTACCAATATTGTGCTACCTACTGTA-TTAAT--AAACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378364            23185 46 +    187130 ATTCAGGAGTTATCAAGATTTTGTTACCCACTGTAGTTAAT--AAACA
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     393481 46 -   1771730 ATTCAGGAGTTATCAAGATTCTGCTGCCCACTGTAGTTAAT--AAACA
i cebCap1.NW_016107755v1   C 0 C 0
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=1434.000000
s hg38.chr6_GL000254v2_alt   985323 4 +   4827813 aaaa--
s panTro5.chr6             29948000 4 + 175400573 AAAA--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181671 4 + 173848474 AAAA--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5982023 4 +   6154872 aaaa--
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chr4             30106578 2 + 171630274 --AA--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378364            23231 2 +    187130 --AA--
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     393527 4 -   1771730 --AAAA
i cebCap1.NW_016107755v1   C 0 I 75
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e chlSab2.chr17            29092790 3 -  71996105 I
e cerAty1.NW_012002711v1     636836 3 +    766320 I
e macNem1.NW_012011356v1    2888402 0 -   2996164 C
e macFas5.chr4             29839119 0 - 170955103 C
e rheMac8.chr4             30175973 0 + 172585720 C
e nomLeu3.chr1a            74687490 0 + 122973662 C

a score=-856.000000
s hg38.chr6_GL000254v2_alt   985327 12 +   4827813 aaaagaaagaaa
s panTro5.chr6             29948004 12 + 175400573 AAAAGAAAGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181675 12 + 173848474 AAAAAAAAGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5982027 12 +   6154872 gaaagaaagaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687490  6 + 122973662 ------AAAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30175973  3 + 172585720 ------AAG---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29839119  3 - 170955103 ------AAG---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888402  3 -   2996164 ------AAG---
i macNem1.NW_012011356v1   C 0 C 0
s calJac3.chr4             30106580  3 + 171630274 ------AGG---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378364            23233  3 +    187130 ------AAG---
i saiBol1.JH378364         C 0 C 0
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393531 75 -   1771730 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e chlSab2.chr17            29092790  3 -  71996105 I
e cerAty1.NW_012002711v1     636836  3 +    766320 I

a score=220964.000000
s hg38.chr6_GL000254v2_alt   985339 48 +   4827813 gaaaCTGGTCTCTGTC-------CTATTTCATATGCTCAGGTACAACTTTTCCAG
s panTro5.chr6             29948016 48 + 175400573 GAAACTGGTCTCTGTC-------CTATTTCATATGCTCAGGTACAACTTTTCCAg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181687 48 + 173848474 GAAACTGGTCTCTGTC-------CTATTTCATATGCTCAGGTACAACTTTTCCAg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5982039 48 +   6154872 gaaaCTGGTCTCTGTC-------CTATTTCATATGCTCAGGTACAACTTTTCCAg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687496 48 + 122973662 GAAACTGTTCTCTGTC-------CTATTTCATATGCTCAGGTACAACTTTTCCAg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30175976 48 + 172585720 GAAACTGGTCTCTGTT-------CTATTTCATATGCTCAGCTACCACGTTTCCAg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29839122 48 - 170955103 GAAACTGGTCTCCGTT-------CTATTTCATATGCTCAGCTACCACGTTTCCAg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888405 48 -   2996164 GAAACTGGTCTCCGTT-------CTATTTCATATGCTCAGCTACGACTTTTCCAG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     636839 48 +    766320 GAAACTAGTCTCCGTT-------CTATTTCATATGCTCAGCTACGACTTTTCCAg
i cerAty1.NW_012002711v1   I 3 C 0
s chlSab2.chr17            29092793 48 -  71996105 GAAACTGGTCTCCGTT-------CTATTTCATATGCTCAGCTACGATGTTTCCAg
i chlSab2.chr17            I 3 C 0
s calJac3.chr4             30106583 55 + 171630274 GAACCTGGTCTCTATGAGAATCTCTATCTGGTGCCTTCAGACAAAACTTCACCAG
i calJac3.chr4             C 0 I 6
s saiBol1.JH378364            23236 48 +    187130 CAAACTGGTCTCTATG-------CTATCTCATGCTCTCAGGCAAAACTTTTCCAG
i saiBol1.JH378364         C 0 C 0
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393531 75 -   1771730 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=5005.000000
s hg38.chr6_GL000254v2_alt   985387 1 +   4827813 a
s panTro5.chr6             29948064 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181735 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5982087 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687544 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30176024 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29839170 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888453 1 -   2996164 A
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     636887 1 +    766320 a
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29092841 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378364            23284 1 +    187130 A
i saiBol1.JH378364         C 0 I 7
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393531 75 -   1771730 I
e calJac3.chr4             30106638 6 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=4500.000000
s hg38.chr6_GL000254v2_alt   985388 1 +   4827813 g
s panTro5.chr6             29948065 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181736 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5982088 1 +   6154872 g
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687545 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30176025 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29839171 1 - 170955103 g
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888454 1 -   2996164 G
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     636888 1 +    766320 g
i cerAty1.NW_012002711v1   C 0 I 40
s chlSab2.chr17            29092842 1 -  71996105 g
i chlSab2.chr17            C 0 C 0
e saiBol1.JH378364            23285 7 +    187130 I
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393531 75 -   1771730 I
e calJac3.chr4             30106638 6 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=10152.000000
s hg38.chr6_GL000254v2_alt   985389 3 +   4827813 aag
s panTro5.chr6             29948066 3 + 175400573 aag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181737 3 + 173848474 aag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5982089 3 +   6154872 aag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687546 3 + 122973662 aag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30176026 3 + 172585720 aag
i rheMac8.chr4             C 0 I 9
s macFas5.chr4             29839172 3 - 170955103 aag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888455 3 -   2996164 Aag
i macNem1.NW_012011356v1   C 0 C 0
s chlSab2.chr17            29092843 3 -  71996105 aag
i chlSab2.chr17            C 0 I 6
e saiBol1.JH378364            23285 7 +    187130 I
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393531 75 -   1771730 I
e calJac3.chr4             30106638 6 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e cerAty1.NW_012002711v1     636889 40 +    766320 I

a score=22073.000000
s hg38.chr6_GL000254v2_alt   985392 37 +   4827813 aag-aggaggggggcggggaggagcaggaggaggagga
s panTro5.chr6             29948069 38 + 175400573 aagaaggaggggggcggggaggagcaggaggaggagga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181740 38 + 173848474 aagaaggaggagggcggggaggagcaggaggaggagga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5982092 38 +   6154872 aagaaggaggggggcggggaggagcaggaggaggagga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687549 19 + 122973662 aaa------------------gagaaggaggaggagg-
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29839175 10 - 170955103 ---gaggaggagg-------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888458 33 -   2996164 ---gaggaggaggaggaggacgaggaggaggaggag--
i macNem1.NW_012011356v1   C 0 C 0
e saiBol1.JH378364            23285  7 +    187130 I
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393531 75 -   1771730 I
e calJac3.chr4             30106638  6 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e chlSab2.chr17            29092846  6 -  71996105 I
e cerAty1.NW_012002711v1     636889 40 +    766320 I
e rheMac8.chr4             30176029  9 + 172585720 I

a score=15514.000000
s hg38.chr6_GL000254v2_alt   985429 22 +   4827813 aagaaggaggagaaggagaagg
s panTro5.chr6             29948107 22 + 175400573 aagaaggaggagaaggagaagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181778 22 + 173848474 aagaaggaggagaaggagaagg
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74687568 18 + 122973662 ----agggggaggaggaagagg
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012011356v1    2888491 22 -   2996164 aagaaggagaggaagaagaagg
i macNem1.NW_012011356v1   C 0 C 0
e saiBol1.JH378364            23285  7 +    187130 I
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393531 75 -   1771730 I
e calJac3.chr4             30106638  6 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e chlSab2.chr17            29092846  6 -  71996105 I
e cerAty1.NW_012002711v1     636889 40 +    766320 I
e macFas5.chr4             29839185  0 - 170955103 C
e rheMac8.chr4             30176029  9 + 172585720 I
e gorGor5.CYUI01015250v1    5982130  0 +   6154872 C

a score=546.000000
s hg38.chr6_GL000254v2_alt   985451 1 +   4827813 a
s panPan2.chr6             30181800 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74687586 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012011356v1    2888513 1 -   2996164 a
i macNem1.NW_012011356v1   C 0 C 0
e saiBol1.JH378364            23285 7 +    187130 I
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393531 75 -   1771730 I
e calJac3.chr4             30106638 6 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e chlSab2.chr17            29092846 6 -  71996105 I
e cerAty1.NW_012002711v1     636889 40 +    766320 I
e macFas5.chr4             29839185 0 - 170955103 C
e rheMac8.chr4             30176029 9 + 172585720 I
e gorGor5.CYUI01015250v1    5982130 0 +   6154872 C
e panTro5.chr6             29948129 0 + 175400573 C

a score=300.000000
s hg38.chr6_GL000254v2_alt   985452 1 +   4827813 g
s nomLeu3.chr1a            74687587 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012011356v1    2888514 1 -   2996164 g
i macNem1.NW_012011356v1   C 0 I 28
e saiBol1.JH378364            23285 7 +    187130 I
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393531 75 -   1771730 I
e calJac3.chr4             30106638 6 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e chlSab2.chr17            29092846 6 -  71996105 I
e cerAty1.NW_012002711v1     636889 40 +    766320 I
e macFas5.chr4             29839185 0 - 170955103 C
e rheMac8.chr4             30176029 9 + 172585720 I
e gorGor5.CYUI01015250v1    5982130 0 +   6154872 C
e panPan2.chr6             30181801 0 + 173848474 C
e panTro5.chr6             29948129 0 + 175400573 C

a score=2298.000000
s hg38.chr6_GL000254v2_alt   985453 44 +   4827813 aagaagaggaagaggaagaggaagaagaagaagaagaagaagaa
s nomLeu3.chr1a            74687588 37 + 122973662 -------ggaagaaggagaagaaggaggagaaggaggaggagaa
i nomLeu3.chr1a            C 0 C 0
e saiBol1.JH378364            23285  7 +    187130 I
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393531 75 -   1771730 I
e calJac3.chr4             30106638  6 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e chlSab2.chr17            29092846  6 -  71996105 I
e cerAty1.NW_012002711v1     636889 40 +    766320 I
e macNem1.NW_012011356v1    2888515 28 -   2996164 I
e macFas5.chr4             29839185  0 - 170955103 C
e rheMac8.chr4             30176029  9 + 172585720 I
e gorGor5.CYUI01015250v1    5982130  0 +   6154872 C
e panPan2.chr6             30181801  0 + 173848474 C
e panTro5.chr6             29948129  0 + 175400573 C

a score=187.000000
s hg38.chr6_GL000254v2_alt   985497 9 +   4827813 --gaagaagaa
s nomLeu3.chr1a            74687625 9 + 122973662 --agaggagga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30176038 9 + 172585720 gaagaggag--
i rheMac8.chr4             I 9 C 0
s macFas5.chr4             29839185 8 - 170955103 -aagaggag--
i macFas5.chr4             C 0 C 0
e saiBol1.JH378364            23285 7 +    187130 I
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393531 75 -   1771730 I
e calJac3.chr4             30106638 6 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e chlSab2.chr17            29092846 6 -  71996105 I
e cerAty1.NW_012002711v1     636889 40 +    766320 I
e macNem1.NW_012011356v1    2888515 28 -   2996164 I
e gorGor5.CYUI01015250v1    5982130 0 +   6154872 C
e panPan2.chr6             30181801 0 + 173848474 C
e panTro5.chr6             29948129 0 + 175400573 C

a score=44522.000000
s hg38.chr6_GL000254v2_alt   985506 88 +   4827813 gaagaggaagaggaagaggaagaggaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
s nomLeu3.chr1a            74687634 45 + 122973662 gaaggagaagaggaagaagaggagtaagaagaaggagaagaagaa-------------------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30176047 88 + 172585720 gaggaggaggaggaagaggaggaggaggaaggagaaggaggaggaagaggaggagaaggagaagaaggagaggaagaagaggaagaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29839193 88 - 170955103 gaggaggaggaggaagaggaggaggaggaaggagaaggaggaggaagaggaggagaaggagaagaaggagaggaagaagaggaagaag
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29092852 85 -  71996105 gaagaggaggaggaagaggaggaggaggaaggaga---aggaggaagaggaggagaaggagaggaagaagaggaagaaggaggaggag
i chlSab2.chr17            I 6 C 0
e saiBol1.JH378364            23285  7 +    187130 I
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393531 75 -   1771730 I
e calJac3.chr4             30106638  6 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e cerAty1.NW_012002711v1     636889 40 +    766320 I
e macNem1.NW_012011356v1    2888515 28 -   2996164 I
e gorGor5.CYUI01015250v1    5982130  0 +   6154872 C
e panPan2.chr6             30181801  0 + 173848474 C
e panTro5.chr6             29948129  0 + 175400573 C

a score=7243.000000
s hg38.chr6_GL000254v2_alt   985594 11 +   4827813 aagaagaagaa
s gorGor5.CYUI01015250v1    5982130 11 +   6154872 aagaaggagaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30176135 11 + 172585720 gaggaggagga
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29839281 11 - 170955103 gaggaggagga
i macFas5.chr4             C 0 I 1
s chlSab2.chr17            29092937 11 -  71996105 ggggaggagga
i chlSab2.chr17            C 0 I 7
e saiBol1.JH378364            23285  7 +    187130 I
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393531 75 -   1771730 I
e calJac3.chr4             30106638  6 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e cerAty1.NW_012002711v1     636889 40 +    766320 I
e macNem1.NW_012011356v1    2888515 28 -   2996164 I
e nomLeu3.chr1a            74687679  0 + 122973662 C
e panPan2.chr6             30181801  0 + 173848474 C
e panTro5.chr6             29948129  0 + 175400573 C

a score=-322.000000
s hg38.chr6_GL000254v2_alt   985605 6 +   4827813 gaagag--
s gorGor5.CYUI01015250v1    5982141 6 +   6154872 ggagaa--
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30176147 5 + 172585720 -gaaaa--
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29839293 5 - 170955103 -gaaaa--
i macFas5.chr4             I 1 C 0
s cerAty1.NW_012002711v1     636929 6 +    766320 -gaagag-
i cerAty1.NW_012002711v1   I 40 C 0
s chlSab2.chr17            29092955 6 -  71996105 -gaaaa-g
i chlSab2.chr17            I 7 C 0
e saiBol1.JH378364            23285 7 +    187130 I
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393531 75 -   1771730 I
e calJac3.chr4             30106638 6 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e macNem1.NW_012011356v1    2888515 28 -   2996164 I
e nomLeu3.chr1a            74687679 0 + 122973662 C
e panPan2.chr6             30181801 0 + 173848474 C
e panTro5.chr6             29948129 0 + 175400573 C

a score=18596.000000
s hg38.chr6_GL000254v2_alt   985611 10 +   4827813 gaagaagagg
s panPan2.chr6             30181801 10 + 173848474 gaagaagaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5982147 10 +   6154872 ggagaagaag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30176152 10 + 172585720 ggaggaggag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29839298 10 - 170955103 ggaggaggag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888543 10 -   2996164 gaaggagaag
i macNem1.NW_012011356v1   I 28 C 0
s cerAty1.NW_012002711v1     636935  9 +    766320 -gaggaggag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29092961  9 -  71996105 -gaggaggag
i chlSab2.chr17            C 0 C 0
e saiBol1.JH378364            23285  7 +    187130 I
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393531 75 -   1771730 I
e calJac3.chr4             30106638  6 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e nomLeu3.chr1a            74687679  0 + 122973662 C
e panTro5.chr6             29948129  0 + 175400573 C

a score=1577.000000
s hg38.chr6_GL000254v2_alt   985621 1 +   4827813 a
s panPan2.chr6             30181811 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5982157 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30176162 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29839308 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888553 1 -   2996164 g
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     636944 1 +    766320 g
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29092970 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378364            23292 1 +    187130 A
i saiBol1.JH378364         I 7 C 0
e otoGar3.GL873550         16736602 98 -  18854210 I
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393531 75 -   1771730 I
e calJac3.chr4             30106638 6 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e nomLeu3.chr1a            74687679 0 + 122973662 C
e panTro5.chr6             29948129 0 + 175400573 C

a score=8255.000000
s hg38.chr6_GL000254v2_alt   985622 2 +   4827813 ag
s panTro5.chr6             29948129 2 + 175400573 ag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181812 2 + 173848474 ag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5982158 2 +   6154872 ag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30176163 2 + 172585720 ag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29839309 2 - 170955103 ag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888554 2 -   2996164 ag
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     636945 2 +    766320 ag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29092971 2 -  71996105 ag
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378364            23293 2 +    187130 AC
i saiBol1.JH378364         C 0 C 0
s otoGar3.GL873550         16736700 2 -  18854210 AG
i otoGar3.GL873550         I 98 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393531 75 -   1771730 I
e calJac3.chr4             30106638 6 + 171630274 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M
e nomLeu3.chr1a            74687679 0 + 122973662 C

a score=41697.000000
s hg38.chr6_GL000254v2_alt   985624 10 +   4827813 aagaagaaAC---
s panTro5.chr6             29948131 10 + 175400573 aagaagAAAC---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181814 10 + 173848474 aagaagaaAC---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5982160 10 +   6154872 aagaagaaAC---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687679  5 + 122973662 -----gAAAC---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30176165 10 + 172585720 aagaagAAAC---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29839311 10 - 170955103 aagaagaaAC---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888556 10 -   2996164 aagaagaaAC---
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     636947 10 +    766320 aagaagAAAC---
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29092973 10 -  71996105 aagaagaaAC---
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30106644 10 + 171630274 AGAGAAAACC---
i calJac3.chr4             I 6 I 2
s saiBol1.JH378364            23295 10 +    187130 AACAAAAAAC---
i saiBol1.JH378364         C 0 I 2
s otoGar3.GL873550         16736702 10 -  18854210 ---AGAAAACTAC
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393531 75 -   1771730 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=1320180.000000
s hg38.chr6_GL000254v2_alt   985634 233 +   4827813 TGTCTCTAGACCTTCATTCTCAGGACAAGTTCATTGTCTGGCACCAAGCTCCTTGGGGTGAATTTTCTTCCAAAAGAGTCC-GGGGAGTCCAGGTATGGAATGGGAGGCAGAAAGTTCAATCAAGGGACTGGGATTTCGGAAT-GAATAATGAAGGGAGATGGACTGGGTCCATGCCGAAGGTTTCTCCCTGGTTTCT-----CAGCCCCCGGGCGAAGACTCAGGGAGACATTGAGACA
s panTro5.chr6             29948141 230 + 175400573 TGTCTCTACACCTTCATTCTCAGGACAAGTTCATTGTCTGGCACCAAGCTCCTTGGGGTGAATTTTCTTCCAAAAG--TCC-GGGGAGTCCAGGTATGGAATGGGAGGCAGAAAGTTCAGTCAAGGGACTGGGATTTCGGAAGAGAATAATGAAGGGAGATGGACTGGGTCCATGCCGAAGGT--CTCCCTGGTTTCT-----CAGCCCCCGGGCGAAGACTCAGGGAGACATTGAGACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30181824 231 + 173848474 TGTCTCTACACCTTCATTCTCAGGACAAGTTCATTGTCTGGCACCAAGCTCCTTGGGGTGAATTTTCTTCCAAAAG--TCC-GGGGAGTCCAGGTATGGAATGGGAGGCAGAAAGTTCAGTCAAGGGACTGGGATTTCGGAAT-GAATAATGAAGGGAGATGGACTGGGTCCATGCCGAAGGTTTCTCCCTGGTTTCT-----CAGCCCCCGGGCGAAGACTCAGGGAGACATTGAGACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5982170 231 +   6154872 TGTCTCTACACCTTCATTCTCAGGACAAGTTCATTGTCTGGCACCAAGCTCCTTGGGGTGAATTTTCTTCCAAAAGAGTCC-GGGGAGTCCAGGTATGGAATGGGAGGCAGAAAGTTCAATCAAGGGACTGGGATTTCGGAAT-GAATAATGAAGGGAGATGGACTGGGTCCATGCCGAAGGTTTCTCCCTGGTTTCT-----CAGCCCCCGGGCGAAGACTCAGGGAGACATTGAG--A
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687684 232 + 122973662 TGTCTCTACACCTTCATTCTCAGGACAAGTTCATTGTCTGGCACCAAGCTCCTT-GGGTTAATTTTCTTCCAAAAGAGTCC-GGGGAGTCCAGGTATGGAGTGGGAGGGAGAAAGTTCAGTCAAGGGACGGGGATTTCGGAAT-GAAAACTGAAGGGAGATGGACTGGGTCCATGCCGATGGTTTCTCCCTGGTTTCT-----CAGCCCCCGGGCAAAGAGTCAGGGAGACATTGAGACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30176175 234 + 172585720 TGTCTCTATACCTTCATTCTCAGGACAAGTTCATTCTCTGGCACCAAGCTCCTTGGGGTGAGTTTTCTTCCAAAAGAGTCCAGGGGAGTCCAGGTATGGAGTGGGAGGCAGAAAGTTCAGTCAAGGGATGGGGATTTCGGAAT-GAGAACTAAAGGGAGATGGACTCGGTCCATGCCGACGGTTTCTCACTGGTTTCT-----CAGTCCCCGGGCGAAGACCCCGGGAGACATTGAGATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29839321 234 - 170955103 TGTCTCTATACCTTCATTCTCAGGACAAGTTCATTCTCTGGCACCAAGCTCCTTGGGGTGAGTTTTCTTCCAAAAGAGTCCAGGGGAGTCCAGGTATGGAGTGGGAGGCAGAAAGTTCAGTCAAGGGATGGGGATTTCGGAAT-GAGAACTAAAGGGAGATGGACTCGGTCCATGCCGACGGTTTCTCACTGGTTTCT-----CAGTCCCCGGGCGAAGACCCCGGGAGACATTGAGATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888566 234 -   2996164 TGTCTCTATACCTTCATTCTCAGGACAAGTTCATTCTCTGGCACCAAGCTCCTTGGGGTGAGTTTTCTTCCAAAAGAGTCCAGGGGAGTCCAGGTATGGTGTGGGAGGCAGAAAGTTCAGTCAAGGGACGGGGATTTCGGAAT-GAGAACTAAAGGGAGATGGACTCGGTCCATGCCGACGGTTTCTCACTGGTTTCT-----CAGTCCCCGGGCGAAGACCCCGGGAGACATTGAGATA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     636957 234 +    766320 TGTCTCTATACCGTCATTctcaggacaagttcattctctggcaccaagctccttgaggtGAGTTTTCTTCCAAAAGAGTCCAGGGGAGTCCAGGTATGGAGTGGGAGGCAGAAAGTTCAGTCAAGGGACGGGGATTTCGGAAT-GAGAACTAAAGGGAGATGGACTCGGTCCATGCCGACGGTTTCTCACTAGTTTCT-----CAGTCCCCGGGTGAAGACCCCGGGAGACATTGAGATA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29092983 234 -  71996105 TGTTTCTATACCTTCATTCTCAGGACAAGTTCATTCTCTGGCACCAAGCTCCTTGGGGTGAGTTTTCTTCCAAAACAGTCCAGGGGAGTCCAGATATGGAGTGGGAGGCAGAAAGTTCAGTCAAGGGACGGGGATTTCGGAAT-GAGAACTGAAGGGAGATGGACTCGGTCCATGCCGACGGTTTCTCACTGGTTTCT-----CAGTCCCCGGGCGAAGACCCCGGGAGACATTGAGATA
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30106656 237 + 171630274 TGTCTCTACACCTCCACTCCCAGGGCGAGCTCACTCTCTGGCATCAAGTTCCCTGTGGTGAATTTCCTTGTACAAGAGTCCAAGGGGA--GAGGTAAGGAGTGGGAGGCAGGGAGTCCAGTTCAGGGACGGGGATTCCAGGAG-GCGAAATGAAGGGAAAGAAGCTGGGCGCAGCCTGGGTTTCTCTCTCTGGTTTCCACAGACAGATCGTTGGCCAGGACTCAGGCAGACAGTGTGACA
i calJac3.chr4             I 2 I 3
s saiBol1.JH378364            23307 234 +    187130 TGTCTCTACACCTCCATTCCCAGGGCGAGTTCACTCTCCGGCAGCAAGTTTCCTGGAGTGAGTTTTGTTCTAGCAGAGTCCAGGGGGA--CAGGTAAGGAGTGGGAGTCAGGAAGTCCAGTTCAGGGACGGAGA-TACGGGAT-GAAAAGTGGAGGGAGAGGGACGCGGCCCATGCTGAGGGTTTTTCTCTGGTTTCT-CAG-TAGCTCCTGGGCCAAGACTCAGGAAGACATTGAGACA
i saiBol1.JH378364         I 2 I 3
s cebCap1.NW_016107755v1     393606 234 -   1771730 TGTCTCTACACCTCCATTCCCAGGGCGAGTTCATTCTCTCGTAGCAAGCTTCCTCGGGTGAATTTTCTTCTAAAAGAGTCCAGGGGGA--CAGGTAAGGAGTGGGAGGCAGGGAGTCCAGTTCGGGGACGGGGA-TACCGGAT-GAAAAGTGAAGGGAGAGGGACGGGGCCCATGCTGAGGGTTTCTCTCTGGTTTCT-CAG-CAGCTCCTGGGCCAAGACTCAGGGAGACATTGAGACA
i cebCap1.NW_016107755v1   I 75 I 25
s otoGar3.GL873550         16736712 188 -  18854210 CATCTCTGCACCTCCAGTTCAAGGGTGAGCTTAC---CTGGCATCAAGTTCCCTGGGGATGAGTTTCATTTAGAAAGGTCCAGACGGG---GAGAAAGGAGTAGGAGGCAG--AGTCCAGTTCTGG----GGTATTCAGGGAA-GA----------------GGCTGGACCCAGACTGGGGGC--------------------CAGT-CCTGGGCCAGG--CTCAGGAGATAGCGTGACA
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=101683.000000
s hg38.chr6_GL000254v2_alt   985867 28 +   4827813 -----C-ACCCTGCACAGGAGGGGGAGGGGGAGG
s panTro5.chr6             29948371 28 + 175400573 -----C-ACCCTGCACAGGAGGGGGAGGGGGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30182055 28 + 173848474 -----C-ACCCTGCACAGGAGGGGGAGGGGGAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5982401 28 +   6154872 -----C-ACCCTGCACAggagggggagggggagg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687916 28 + 122973662 -----C-ACCCTGCACAGGAGGGGGAGGGGGAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30176409 28 + 172585720 -----C-ACCCTGCACAGTAGGAGGAGGGTGAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29839555 28 - 170955103 -----C-ACCCTGCACAGTAGGAGGAGGGTGAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888800 28 -   2996164 -----C-ACCCTGCACAGTAGGAGGAGGGTGAGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     637191 28 +    766320 -----C-ACCCTGCACAGTAGGAGGAGGGTGAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29093217 28 -  71996105 -----C-ACCCTGCACAGTAGGAGGAGGGTGAGG
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30106896 23 + 171630274 -----AGGCTTGGTGACGGAGAAGAGGG------
i calJac3.chr4             I 3 C 0
s saiBol1.JH378364            23544 22 +    187130 -----C-GCTTGGCACAGGAGAAGCGGG------
i saiBol1.JH378364         I 3 C 0
s otoGar3.GL873550         16736900 27 -  18854210 AACAGT-CCTTGGTGCAGGAGAAGCAGG------
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     393840 25 -   1771730 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=514128.000000
s hg38.chr6_GL000254v2_alt   985895  97 +   4827813 G------GGAGGGCAAAGTCCCAGGGCCCCAGGAGTGGCTCTCAAGGGCTCAGGCCCCGA-GGCGGTGTCTGGGGTTGGA-AGGCTCAGTATTGAGAATTCCCCA
s panTro5.chr6             29948399  91 + 175400573 G------------CAAAGTCCCAGGGCCCCAGGAGTGGCTCTCAAGGGCTCAGGCCCCGA-GGCGGTGTCTGGGGTTGGG-AGGCTCAGTATTGAGAATTCCCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30182083  91 + 173848474 G------------CAAAGTCCCAGGGCCCCAGGAGTGGCTCTCAAGGGCTCAGGCCCCGA-GGCGGTGTCTGGGGTTGGG-AGGCTCAGTATTGAGAATTCCCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5982429 103 +   6154872 gggagggggagggCAAAGTCCCAGGGCCACAGGAGTGGCTCTCAAGGGCTCAGGCCCCGA-GGCGGTGTCTGGGGTTGGG-AGGCTCAGTATTGAGAATTCCCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74687944  91 + 122973662 G------------CAAAGTCCCAGGGCCCCAGGAGTGGCTCTCAAGGGCTCAGGCCTCGA-GGCGGTGTCTGGGGTGGGG-GGGCTCAGTATTGAGAATTCCCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30176437  91 + 172585720 G------------CAAAGTCTCAGGGCCCCAGGAGTGGCTCTCAAGGGCTCAGGCCCCGA-GGCAGCGTCTGGGGTGGGG-AGGGTCAGTATTGAGAATTCCCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29839583  91 - 170955103 G------------CAAAGTCTCAGGGCCCCAGGAGTGGCTCTCAAGGGCTCAGGCCCCGA-GGCAGCGTCTGGGGTGGGG-AGGGTCAGTATTGAGAATTCCCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888828  91 -   2996164 G------------CAAAGTCTCAGGGCCCCAGAAGTGGCTCTCAAGGGCTCAGGCCCCGA-GGCAGCGTCTGGGGTGGGG-AGGGTCAGTATTGAGAATTCCCCA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     637219  91 +    766320 G------------CAAAGTCCCAGGGCCCCAGGAGTGGCTCTCAAGGGCTCAGGCCCCGA-GGCGGCGTCTGGGGTGGGG-AGGCTCAGTATTGAGAATTCCCCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29093245  91 -  71996105 G------------CAAAGTCCCAGGGCCCCAGGAGTGGCTCTCAAGGGCTCAGGCCCCGA-GGCGGCGTCTAGGGTGGGG-AGGCTCAGTATTGAGAATTCCCCA
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30106919  98 + 171630274 ------ATCAGGACAAAGTCCTAGTTCC-CGGGCGTGACTCTCGGGGTCTCAGGCGCCTAGGGCCCTGTCGGTATTGGGGAAAGTGCAGTGTTGGGGATTCCCCA
i calJac3.chr4             C 0 M 741
s saiBol1.JH378364            23566  97 +    187130 ------GTCAGGGCGAAGTCCCAGGGCCTCAGGGGTGGCTCTGACGGTCTC-GACCCCGACGGCAGTGTATGGATTGGGG-AGGCGCAGCGTTGACGGTCCCCGA
i saiBol1.JH378364         C 0 I 2
s cebCap1.NW_016107755v1     393865  98 -   1771730 ------GTCAGGGCGAAGTCCCAGGGTCCCAGGGGTGGCTCTGACGGTCTCAGACCCCGAAGGCGGTGTATGGATTGGGG-AGGCGCAGCGTTGGGGACTCCTCA
i cebCap1.NW_016107755v1   I 25 C 0
s otoGar3.GL873550         16736927  95 -  18854210 ------GTCAGGGCAAAGCCCCAGGTTC-TGGCTGTGGCTTTCAGGGTCTCAGTCCTAAC-AGCGGTTTC-AGAGAGGGG-AAGGTGAGTCCTGGAGATTCCCCA
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=1796126.000000
s hg38.chr6_GL000254v2_alt   985992 322 +   4827813 TCTCCCCAGAGTT---TCTCTTTCTCTCCCAACCCGTGTCAGGTCCTTCATCCTGGATACTCATAACGCGGCCCCATTTCTCACTCCCATTGGGCGTCGCGTTTCTAGAGAAGCCAATCAGTGTCGCCGCAGTTCCCAGGTTCTAAAGT-CCCACGCACCCCGCGGGACTCATATTTTTCCCAGACGCGGAGGTTGG-GGTCATGGCGCCCCGAAGCCTCCTCCTGCTGCTCTCAGGGGCCCTGGCCCTGACCGATACTTGGGCGGGTGAGTGCGGGGTCCAGAGAGAAACGGCCTCTGTGGGGAGGAGTGAGGGGCCCGCCCGGTG
s panTro5.chr6             29948490 322 + 175400573 TCTCCCCAGAGTT---TCTCTTTCTCTCCCAACCCGTGTCAGGTCCTTCTTCCTGGATACTCATAACGCGGCCCCATTTCTCACTCCCATTGGGTGTCGGGTTTCTAGAGAAGCCAATCAGTGTCGCCGCAGTTCCCAGGTTCTACAGT-CCCACGCACCCCGCGGGACTCATATTTTTCCCAGACGCTGAGGTTGG-GGTCATGGCGCCCCGAAGCCTCCTCCTGCTGCTCTCAGGGGCCCTGGCCCTGACCGAGACTTGGGCAGGTGAGTGCGGGGTCCAGAGAGAAACGGCCTCTGTGGGGAGGAGTGAGGGGCCCGCCCGGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30182174 321 + 173848474 TCTCCCCAGAGTT---TCTCTTTCTCTCCCAACCCGTGTCAGGTCCTTCTTCCTGGATACTCATAACGCGGCCCCATTTCTCACTCCCATTGGGTGTCGGGTTTCTAGAGAAGCCAATCAGTGTCGCCGCAGTTCCCAGGTTCTACAGT-CCCACGCACCCCGCGGGACTCATATTTTTCCCAGACGCTGAGGTTGG-GGTCATGGCGCCCCGAAGCCTCCTCCTGCTGCTCTCAGGGGCCCTGGCCCTGACCGAGACTTGGGCAGGTGAGTGCGGGGTCCAGAGAGAAACGGCCTCTGTGGGGAGGAGTGAGGGG-CCGCCCGGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5982532 322 +   6154872 TCTCCCCAGAGTT---TCTCTTTTTCTCCCAACCCGTGTCAGGTCCTTCTTCCTGGATACTCATAACGCGGCCCCATTTCTCACTCCCATTGGGTGTCGGGTTTCTAGAGAAGCCAATCAGTGTCGCCGCAGTTCCCAGGTTCTAAAGT-CCCACGCACCCCCCGGGACTCATATTTTTCCCAGACGCGGAGGTTGG-GGTCATGGCGCCCCGAAGCCTCCTCCTGCTGTTCTCAGGGGCCCTGGCCCTGACCAAGACTTGGGCAGGTGAGTGCGGGGTCCAGAGAGAAACGGCCTCTGTGGGGAGGAGTGAGGGGCCCGCCCGGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74688035 321 + 122973662 TCTCCCCAGAGTT---TCTCTTTCTCTCCCAACCCGTGTCAGGTCCTTCTTCCTGGATACTCATAACACGGCCCCATTTCTCACTCCCATTGGGTGTCGCGTTTCTAGAGAAGACAATCAGTGTCGCCGCAGTTCCC-GGTTCTAAAGT-CCCACGCACCGCCCGGGACTCAGATTCTTCCCAGACGCGGAGGTTGG-GGTCATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCAGGGGCCCTGGCCGTGACCGAGACCTGGGCGGGTGAGTGCGGGGTCGAGAGAGAAACGGCCTCTTTGGGGAGAAGTGAAGGGCCCGCCCAGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30176528 320 + 172585720 TCTCCCCAGAGTT---TCTCCTTCTCTCCCAACCCGTGTCAGATTCTTCTTCCTGGATACTCATAACGCGGCCCCATTTCTCACTCCCATTGTGTGTGGAGTTTCTAGAGAAGCCAATGAGTGTCGCCGC-GTTCC--GGTTCTGAAGTCCCCACGCACCCTCCGGGACTCAGATTCTCCCCAGACGCGGAGGTCGG-GGTCATGGCGCCCCGAACCCTCCTCCTGGTGCTCTCAGGGGCCCTGGCCCTGACCGAGACCTGGGCGGGTGAGTGCGGGGTCGGGAGGGAAAGGGTCTCTGCGGGGAGAAGCGAGGGGCCCGTAAGGCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29839674 320 - 170955103 TCTCCCCAGAGTT---TCTCCTTCTCTCCCAACCCGTGTCAGATTCTTCTTCCTGGATACTCATAACGCGGCCCCATTTCTCACTCCCATTGTGTGTGGAGTTTCTAGAGAAGCCAATGAGTGTCGCCGC-GTTCC--GGTTCTGAAGTCCCCACGCACCCTCCGGGACTCAGATTCTCCCCAGACGCGGAGGTTGG-GGTCATGGCGCCCCGAACCCTCCTCCTGGTGCTCTCAGGGGCCCTGGCCCTGACCGAGACCTGGGCGGGTGAGTGCGGGGTCGGGAGGGAAAGGGTCTCTGCGGGGAGAAGCGAGGGGCCCGTAAGGCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2888919 320 -   2996164 TCTCCCCAGAGTT---TCTCCTTCTCTCCCAACCCGTGTCAGGTTCTTCTTCCTGGATACTCATAACGCGGCCCCATTTCTCACTCCCATTGTGTGCGGAGTTTCTAGAAAAGCCAATCAGTGTCGCCGC-ATTCC--GGTTCTGAAGTCCCCACGCACCCTCCGGGACTCAGATTCTCCCCAGACGCGGAGGCTGG-GGTCATGGCACCCCGAACCCTCCTCCTGGTGCTCTCAGGGGCCCTGGCCCTGACCGAGACCTGGGCGGGTGAGTGCGGGGTCGGGAGGGAAAGGGTCTCTGCGGGGAGAAGCGAGGGGCCCTTAAGGCG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     637310 320 +    766320 TCTCCCCAGAGTT---TCTCCTTCTCTCCCAACCCGTGTCAGGTTCTTCTTCCTGGATACTCATAACGCGGCCCCGTTTCTCACTCCCATTGTGTGCGGAGTTTCTAGAAAAGCCAATCAGTGTCGCCGC-GTTCT--GGTTCTAAAGTCCCCACGCACCCTCCGGGACTCAGACTCTCCCCAGACGCGGAGGTTGG-GGTCATGGCACCCCGAACCCTCCTCCTGGTGCTCTCAGGGGCCCTGGCCCTGACCGAGACCTGGGCGGGTGAGTGCGGGGTCGGGAGGGAAAGGGTCTCTGCGGGGAGCAGCGAGGGGCCGGTACCGCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29093336 319 -  71996105 TCTCCCCAGAGTT---TCTCCTTCTCTGCCAACCCGTGTCAGGTTCTTCTTCCTGGATACTCATAACGCGGCCCCATTTCTCACTCCCATTGTGTGTGGAGTTTCTGGAGAAGCCAATGAGTGTCGCCGC-GTTCC--GGTTCTAAAGTCCCCACGCGCCCTCCGGGACTCAGATTCTCCCCAGACGCGGAGGTTGG-GGTCATGGCACCCCGAACCCTCCTCCTGGTGCTCTCAGGGGCCCTGGCCCTTACCGAGACCTGGGCGGGTGAGTGCGGGGTCGGGAGGGAAAGGGTCTCTG-GGTGAGGAGCGAGGGGCCCGTACGGCG
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378364            23665 302 +    187130 --GCTGC--AGTT---TCCCTTCCTCTCCCAAACTGTGTCGGGTTCTTCTTCCTGGATACTCATGACGCGAACCCAGTTCCCACTCCCATTGGGTGCCGGGTTTCTAGAGAAGCCAATCAGCGTCGCCGCGGTCCC--GGTTCTGAAGTCTCCAGTCACCCACCCCGACTCCGATCCTTCCCAGACGCCGAGGATGA-GGTCATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCGGGGGCCCTGGCCCTGACCGAGACCCGGGCGGGTGAGTGCGGGGTCGGGAGAGAAACGGTCT---------------GGACGCTCGCCGGGTG
i saiBol1.JH378364         I 2 C 0
s cebCap1.NW_016107755v1     393963 321 -   1771730 TCTCCGCAGAGTT---TCTCTTCCTCTCCCAACCTGTGTCGGGTCCTTCTTCCTGGATACTCACGACGCGGACCCAGTTCCCACTCCCATTGGGTG-TGGGTTTCTAGAGAAGCCAATCAGCGTCGCCGCGGTCCC--GGTTCTAAGGTCCCCAGTCACCCACCCGGACTCAGATTCTCCCCAGACGCCGAGGATGGCGCTCATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCCGGGGCCCTGGCCCTGACCGAGACCTGGGCAGGTGAGTGCGGGGTCGGGAGGGAAACGGCTTCTGCGGGGAGGAGCGAGGGGCCCGCCGGGCG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         16737022 320 -  18854210 TCTCCTCAAAGTTTGGTCTCTTTCTAAGCCAACCCTGGTCAGGTCCTTCATCCTGGATTCTGCTGAC-CTGCAGTAGTTCTCATTCCCATTGGGTGT-GGGTTTCTAG--AAGCCAATCAGCGTCGCCGCGGTTACC-GGTTATTAAGACTCCACAGAGCTACCCGGACTCAGCCTCTCCTCAGACCAGAAGATGGG-GGTCACGGTGCCCCAAACCCTCCTCCTGCTGCTGTCGGCGGCCCTGGTCCTGACTGAAGCCTGGGCGGGTGAGTGCGGGGCTGGAAGGGAAATGGTCTCTGCGAGGAGT-GCGAGGGGACCTTCCGGCG
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30107017 741 + 171630274 M
e colAng1.NW_012115566v1    2744068 2194 -   3067355 M

a score=126718.000000
s hg38.chr6_GL000254v2_alt   986314 21 +   4827813 GG-----GGCGCAGGACTCAGGGAGC
s panTro5.chr6             29948812 21 + 175400573 GG-----GGCGCAGGACTCAGGGAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30182495 21 + 173848474 GG-----GGCGCAGGACTCAGGGAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5982854 21 +   6154872 GG-----GGCGCAGGACTCAGGGAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74688356 21 + 122973662 GG-----GGCGCAGGACTCAGGGAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30176848 21 + 172585720 CG-----GGCGCAGGACCTGGGGAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29839994 21 - 170955103 GG-----GGCGCAGGACCTGGGGAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2889239 21 -   2996164 GG-----GGCGCAGGACCTGGGGACT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     637630 21 +    766320 GG-----GGCGCAGGACCTGGGGAGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29093655 21 -  71996105 GG-----GGCGCAGAACCTGGGGAGT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2746308 21 -   3067355 GG-----GGCGCAGGACCTGGGGAGT
i colAng1.NW_012115566v1   M 2194 C 0
s saiBol1.JH378364            23967 20 +    187130 AG-----AGCGCA-GACCCGGGGAGC
i saiBol1.JH378364         C 0 M 823
s cebCap1.NW_016107755v1     394284 26 -   1771730 GGGGGGTGGCGCAGGACCTGGGGAGC
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         16737342 20 -  18854210 GG-----GACGCAGG-TCCGGGAAGT
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30107017 741 + 171630274 M

a score=2957562.000000
s hg38.chr6_GL000254v2_alt   986335 483 +   4827813 CGCGCCCGGAGGAGGGTCT-GGCGGGTCTCAGCCCCTCCTCGCCCCCAGGCTCCCACTCCTTGAGGTATTTCAGCACCGCTGTGTCGCGGCCCGGCCGCGGGGAGCCCC------GCTACATCGCCGTGGAGTACGTAGACGACACGCAATTCCTGCGGTTCGACAGCGACGCCGCGATTCCGAGGATGGAGCCGCGGGAGCCGTGGGTGGAGCAAGAGGGGCCGCAGTATTGGGAGTGGACCACAGGGTACGCCAAGGCCAACGCACAGACTGACCGAGTGGCCCTGAGGAACCTGCTCCGCCGCTACAACCAGAGCGAGGCTGGTGAGTGAACCCGGCCGGGGGCGCAGGTCACGACCACCCCCCATCCGCCACGGACCGCCCGGGTCCCCCCGAGTCTCCGGATCCGAAATCTACCCCGAGGCAGCGGGACCCGCCCAGACCCTCC-----ACCCGGGAGAGTCC--CAGGCGCCTTTACCGAGGTTCATTTTC
s panTro5.chr6             29948833 483 + 175400573 CGCGCCCGGAGGAGGGTCG-GGCGGGTCTCAGCCCCTCCTCGCCCCCAGGCTCCCACTCCTTGAGGTATTTCAGCACCGCTGTGTCGCGGCCCGGCCGCGGGGAGCCCC------GGTACATCGCCGTGGAGTACGTAGACGACACGCAGTTCCTGCGGTTCGACAGCGACGCCGCGATTCCGAGGATGGAGCCTCGGGAGCCGTGGGTGGAGCAAGAGGGGCCGCAGTATTGGGAGAGGACCACAGGATACGCGAAGGCCAACGCACAGACTGACCGAGTGGCCCTGAGGAACCTGCTCCGCCGCTACAACCAGAGCGAGGCCGGTGAGTGACCCCGGCCGGGGACGCAGGTCACGACCACCCCCCATCCGCCACGGACCGCCCGGGTCCCTCAGAGTCTCCGGATCCGAAATCCACCCCGAGGCAGCGGGACCCGCCCAGACCCTCC-----ACCCGGGAGAGTCC--CAGGCGCGTTTACCCAGGTTCATTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30182516 483 + 173848474 CGCGCCCGGAAGAGGGTCG-GGCGGGTCTCAGCCCCTCCTCGCCCCCAGGCTCCCACTCCTTGAGGTATTTCAGCACCGCTGTGTCGCGGCCCGGCCGCGGGGAGCCCC------GGTACATCGCCGTGGAGTACGTAGACGACACGCAGTTCCTGCGGTTCGACAGCGACGCCGCGATTCCGAGGATGGAGCCTCGGGAGCCGTGGGTGGAGCAAGAGGGGCCGCAGTATTGGGAGAGGACCACAGGATACGCGAAGGCCAACGCACAGACTGACCGAGTGGCCCTGAGGAACCTGCTCCGCCGCTACAACCAGAGCGAGGCCGGTGAGTGACCCCGGCCGGGGACGCAGGTCACGACCACCCCCCATCCGCCACGGACCGCCCGGGTCCCTCAGAGTCTCCAGATCCGAAATCCACCCCGAGGCAGCGGGACCCGCCCAGACCCTCC-----ACCTGGGAGAGTCC--CAGGCGCCTTTACCCAGGTTCATTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5982875 483 +   6154872 CGCGCCCGGAGGAGGGTCG-GGCGGGTCTCAGCCCCTCCTCGCCCCCAGGCTCCCACTCCTTGAGGTATTTCAGCACCGCTGTGTCGCGGCCCGGCCGCGGGGAGCCCC------GGTACATCGCCGTGGAGTACGTAGACGACACGCAGTTCCTGCGGTTCGACAGCGACGCCGCGATTCCGAGGATGGAGCCTCGGGAGCCGTGGGTGGAGCAAGAGGGGCCGCAGTACTGGGAGAGGACCACAGGGTACGCCAAGGCCAACGCACAGACTGACCGAGTGGCCCTGAGGAACCTGCTCCGCCGCTACAACCAGAGCGAGGCCGGTGAGTGACCCCGGCCGGGGACGCAGGTCACGACCACCCCCCATCCGCCACGGACCGCCCGGGTCCCTCAGAGTCTCCGGATCCGAAATCCACCCCGAGGCAGCGGGACCCGCCCAGACCCTCC-----ACCCGGGAGAGTCC--CGGGCGCCTTTACCCAGGTTCATTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74688377 483 + 122973662 CGCGCCCGGAGGAGGGTCG-GGCTGGTCTCAGCCCCTCCTTGCCCCCAGGCTCCCACTCCTTGAGGTATTTCAGCACCGCTGTGTCGCGTCCCGGCCGCGGGGAGCCCC------GGTACATCGCCGTGGAGTACGTGGACGACACGCAGTTCCTGCGGTTCGACAGCGATGCCGCGATTCCGAGGATGGAGCCGCGGGCGCAGTGGGTGGAGCAAGAGGGGCCGCAGTACTGGGAGCGGACCACAGGGTACGCCAAGGCCAACGCACAGACTGACCGAGTGGCCCTGAGGAACCTGCTCCGCCGCTACAACCAGAGCGAGGCGGGTGAGTGACCCCGGCCGGGGGCGCAGGTCACGACCACCCCCCATCCGCCACGGACCTCCCGGGTCCCTCAGAGTCTCCGGATTCGAAATCCACCCCGAGGCAGCGGGACCTGCCCAGACCCTCC-----ACCAGGGAAAGTCC--CAGGCGCCTTTACCCAGGTTCATTTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30176869 489 + 172585720 TGCGCCCAGAGGAAGGTCG-GGCGGATCTCAGCCCCTCCTCGCCCCCAGGCTCCCACTCCTTGCGGTATTTTAGCACCGCTGTGTCGCGGCCCGGCCGCAGGGAGCCTCAGTACAGGTACATCGCGGTGGAGTACGTGGACGACACGCAGTTCCTGCGGTTCGACAGCGACGCCGCGATTCCGAGGATGGAGCCGCGGGAGCCGTGGGTGGAGCAAGAGGGGCCGCAGTATTGGGAGCGGACCACAGGGTACGCCAAGGCCAACGCACGGACTGACCGAGTGGCCCTGAGGAAGCTGCTCCTCCGCTACAACCAGAGCGAGGCAGGTGAGCGACCCCGACCAGGGGCGCGGGTCATGACCACTCCCCATCAGCCACGGACCGTCCGGGTCCCCCAGAGTCTCCGGGTCCGAAATCCACCCTGAGGCTGCGGGACCCGCCCAGACCCTCC-----ACCCAGGAGAGTCC--CAGGCGCCTTTACCGGGTTTCATTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29840015 489 - 170955103 TGCGCCCAGAGGAAGGTCG-GGCGGATCTCAGCCCCTCCTCGCCCCCAGGCTCCCACTCCTTGCGGTATTTTAGCACCGCTGTGTCGCGGCCCGGCCGCAGGGAGCCTCAGTACAGGTACATCGCGGTGGAGTACGTGGACGACACGCAGTTCCTGCGGTTCGACAGCGACGCCGCGATTCCGAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCAAGAGGGGCCGCAGTATTGGGAGCGGACCACAGGGTACGCCAAGGCCAACGCACGGACTGACCGAGTGGCCCTGAGGAAGCTGCTCCTCCGCTACAACCAGAGCGAGGCAGGTGAGCGACCCCGACCAGGGGCGCGGGTCATGACCACTCCCCATCAGCCACGGACCGTCCGGGTCCCCCAGAGTCTCCGGGTCCGAAATCCACCCTGAGGCTGCGGGACCCGCCCAGACCCTCC-----ACCCAGGAGAGTCC--CAGGCGCCTTTACCGGGTTTCATTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2889260 489 -   2996164 TGCTCCCGGCGGAAGGTCG-GGCGGATCTCAGGCCCTCCTCGCCCCCAGGCTCCCACTCCTTGCGGTATTTTAGCACCGCTGTGTCGCGGCCTGGCCGCAGGGAGCCTCGGTACAGGTACATCGCGGTGGAGTACGTGGACGACACGCAGTTCCTGCGGTTCGACAGCGACGCCGCGATTCCGAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCAAGAGGGGCCGCAGTATTGGGAGCGGACCACAGGGTACGCCAAGGCCAACGCACGGACTGACCGAGTGGCCCTGAGGAAGCTGCTCCTCCGCTACAACCAGAGCGAGGCCGGTGAGCGACCCCGACCAGGGGCGCGGGTCATGACCACTCCCCATCAGCCACGGACCGTCCGGGTCCCCCAGAGTCTCCGGGTCCGAAATCCACCCTGAGGCTGCGGGACCCGCCCAGACCCTCC-----ACCCAGGAGAGTCC--CAGGCGCCTTTACCCGGTTTCATTTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     637651 489 +    766320 TGCGCCCGGAGGAAGGTCG-GGCGGATCTCAGCTCCTCCTCGCCCCCAGGCTCCCACTCCTTGCGGTATTTTAGCACCGCTGTGTCGCGGCCCGGCCGCAGGGAGCCTCGGTACAGGTACATCGCGGTGGAGTACGTGGACGACACGCAGTTCCTGCGGTTCGACAGCGACGCCGCGATTCCGAGGATGGAGCCGCGAGCGCAGTGGGTGGAGCAAGAGGGGCCACAGTATTGGGAGCGGACCACAGGGTACGCCAAGGCCAACGCACGGACTGACCGAGTGGCCCTGAGGAAGCTGCTCCTCCGATACAACCAGAGCGAGGCCGGTGAGCGACCCCGACCAGGGGCGCGGGTCACGACCACTCCCCATCAGCCACGGACCGTCCGGGTCCCCCAGAGTCTCCGGGCCCGAAATCCACCCTGAGGCTGCGGGACCCGCCCGGACCCTCC-----ACCCAGGAGAGTCC--CAGGGGCCTTTACTGGGTTTCATTTTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29093676 489 -  71996105 TGCGCCCAGAGGAAGGTCG-GACGGATCTCAGCCCCTCCTCGCCCCCAGGCTCCCACTCCTTGCGGTATTTTAGCACCGCCGTGTCGCGGCCCGGCCACAGGGAGCCTCGGTACAGGTACATCGCGGTGGAGTACGTGGACGACACGCAGTTCCTGCGGTTCGACAGCGACGCCGCAATTCCGAGGATGGAACCGCGAGCGCCGTGGGTGGAGCAAGAGGGGCCGCAGTATTGGGAGCGGACCACAGGGTACGCCAAGGCCAACGCACGGACTGACCGAGTGGCCCTGGGGAAGCTGCTCCTCCAATACAACCAGAGCGAGGCCGGTGAGCGACCCCGACCAGGGGCGCGGGTCACGACCACTCCCCAGCAGCCACGGACCGTCCGGGTCCCCCAGAGTCTCCGGGTCCGAAATCCACCCTGAGGCTGCGGGACCCGCCCAGACCCTCC-----ACCCAGGAGAGTCC--CAGGCGCCTTTACCGGGTTTCATTTTC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2746329 489 -   3067355 TGCGCCCGGGAGAAGATCG-GGCGGATCTCAGCCCCTCCTCGCCCCCAGGCTCCCACTCCTTGCGATATTTTAGCACCGCTGTGTCGCGGCCCGGCCGCAGGGAGCCTCGGTACAGGTACATCGCGGTGGAGTACGTGGACGACACGCAGTTCCTGCGGTTCGACAGCGACGCCGCGATTCCGAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCAAGAGGGACCGCAGTATTGGGAGCGGACCACAGGGTACGCCAAGGCCAACGCACAGACTGACCGAGTGGCCCTGAGCAACCTGCTCCTCCGCTACAACCAGAGCGAGGCCGGTGAGTGACTCCGACCGGGGGCGCAGGTCACGACCACTCCCCATGAGCCACGGACCGTCCGGGTCCCCCAGAGTCTCCGGGTCCGAAATCCACCCTGAGGCTGCGGGACCCGCCCAGACCCTCC-----ACCCAGGAGAGTCC--CAGGCGCCTTTACCGGGTTTCATTTTC
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     394310 486 -   1771730 CGCGCCGGGAGGAGTGTC--GGCGGGTCTCA-CCCCTCCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCAGCACCGCCGTGTCCCGGCCCGGCCGCGGGGAGCCCC------GGTACATCGAAGTCGGCTACGTGGACGACACGCAGATCGTGCGGTTCGACAGCGACGCCGCGATTCCGAGGATGGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCGGAGTATTGGGAGGAGCAGACACGGATCGCCAAGGCCAACGCACAGACTGACCGAGTGAACCTGCGGATCGCGCTCGGCTACTACAACCAGAGCGAGGCTGGTGAGTGAACCCCGCCTGGGGCACAGGACACGACCCCTCCCCATTTCCCACCGACGGCCAGGGTCGTCTCGAGTCTCTGGGTCCAAGATCCACCCCGGGGCTGCGGGACCCGCCCCGCCCCGCCCCTAGACCCGGAACAAACA--CAGCCGCCTTTACCCGGTTTCATTTTC
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         16737362 482 -  18854210 CGCGCCGGGAGGAGGGTCGCGCCGGGTCTCAGCCCCTCTCGCCCCCCAGGGTCCCACTCCATGAGGTATTTCTCCACCGCCGTGTCCCGGCCCGGCCGCGGGGAGCCCC------GGTTCATTTCCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCGGAGAATCCAAGGGAGGAGCCGCGGGCGCCGTGGATAGAGCGGGAGGGGCCGGAGTATTGGGACGAGCAGACACGGCGCGCCAAGGGCGCTGCACAGACTTTCCGAGTGAGCCTGGAGAACCTGCGCCGCTATTACAACCAGAGCGAGGACGGTGAGTGACCCCGGGACCGGCCACAGGTCAGGACGCCTCCC--TCCG-CACAAACAAGCCCGGGTCTCTGGAGGGTCCGGGTCCGAGAGTCACCCTGAGGCTGCGTGACCC-CTGAGACCTTCG-----ACCCTGAAAGGGCCCGCAGGGACTTTCACCCAGTTTCGTTTTC
i otoGar3.GL873550         C 0 I 399
e saiBol1.JH378364            23987 823 +    187130 M
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30107017 741 + 171630274 M

a score=1648302.000000
s hg38.chr6_GL000254v2_alt   986818 255 +   4827813 AGTTTAGGCC-AAAATCCCCGCGGGTTgggcggggagggggcggggctagctgggcggggcTGACTGCGGGGA-CCGGCTAGGGTCTCACACCCTCCAGGGAATGAATGGCTGCGACATGGGGCCCGACGGACGCCTCCTCCGCGGGTATCACCAGCACGCGTACGACGGCAAGGATTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACCGTGGCTCAGATCACCCAGCGCTTCTATGAGGC
s panTro5.chr6             29949316 255 + 175400573 AGTTTAGGCC-AAAATCCCCACGGGTTGGGCGGGGAGGGGGCGGGGCTAGCTGGGTGGGGCTGACTGCGGGGA-CCGGCTAGGGTCTCACACCCTCCAGGGAATGAATGGCTGCGACATGGGGCCCGACGGACGCCTCCTTCGCGGGTATCACCAGCACGCGTACGACGGCAAGGATTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACCGTGGCTCAGATCACCCAGCGCTTCTATGAGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30182999 256 + 173848474 AGTTTAGGCC-AAAATCCCCGCGGGTTgggcggggagggggcggggctagctgggcggggcTGACTGCGGGGACCCGGCTAGGGTCTCACACCCTCCAGGGAATGAATGGCTGCGACATGGGGCCCGACGGACGCCTCCTCCGCGGGTATCACCAGCACGCGTACGACGGCAAGGATTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACCGTGGCTCAGATCACCCAGCGCTTCTATGAGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5983358 255 +   6154872 AGTTTAGGCCAAAAATCCCCACGGGTTgggcggggagggggcggggctagctgggcggggcTGACTGCGGGGA-CCGGCTAGGGTCT-ACACCCTCCAGGGAATGAATGGCTGCGACATGGGGCCCGACGGACGCCTCCTTCGCGGGTATCACCAGCACGCGTACGACGGCAAGGATTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACCGTGGCTCAGATCACCCAGCGCTTCTATGAGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74688860 256 + 122973662 AGTTTAGGCC-AAAATCCCCGCGGGTTGGGAGGGGAAGGGGCGGGGCTCGCTGGGCGGGGCTGACTGCGGGGACTTGGCTAGGGTCTCACACCCTCCAGGGAATGAATGGCTGCGACATGGGGCCCGACGGACGCCTCCTCCGCGGGTATCACCAGCACGCGTACGACGGCAGGGATTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACCGTGGCTCAGATCACCCAGCGCTTCTATGAGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30177358 256 + 172585720 AGTTTAGGCC-AAAATCCCGGCGGGTTGGGCGGAGAGAGGGCGCGGCTAGCTAGACGGGGCTGACTGCAGGGACCGGGCCAGGGTCTCACACCCTCCAGGGAATGAACGGCTGCGACATGGGGCCCGACGGACGCCTCCTCCGCGGGTATCACCAGCACGCCTACGACGGCAAGGATTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGACACGGTAGCTCGGATCACCCAGCGCTTCTATGAGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29840504 256 - 170955103 AGTTTAGGCC-AAAATCCCGGCGGGTTGGGCGGAGAGAGGGCGCGGCTAGCTAGACAGGGCTGACTGCAGGGACCGGGCCAGGGTCTCACACCCTCCAGGGAATGAACGGCTGCGACATGGGGCCCGACGGACGTCTCCTCCGCGGGTATCACCAGCACGCCTACGACGGCAAGGATTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGACACGGTAGCTCGGATCACCCAGCGCTTCTATGAGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2889749 256 -   2996164 AGTTTAGGCC-AAAATCCCGGCGGGTTGGGCGGAGAGAGGGCGCGGCTAGCTAGACGGGGCTGACTGCAGGGACCGGGCCAGGGTCTCACACCCTCCAGGGAATGAACGGCTGCGACATGGGGCCCGACGGACGCCTCCTCCGCGGGTATCACCAGCACGCCTACGACGGCAAGGATTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGACACGGTAGCTCGGATCACCCAGCGCTTCTATGAGGC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     638140 256 +    766320 AGTTTAGGCC-AAAATCCCGGCGGGTTGGGCGGAGAGAGGGCGCGGCTAGCTGGACTGGGCTGACTGCAGGGACCGGGCCAGGGTCTCACACCCTCCAGGGAATGAATGGCTGCGACATGGGGCCCGACGGACGCCTCCTCCGCGGGTATCACCAGCACGCCTACGACGGCAAGGATTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACTGCCGCGGACACGGTAGCTCGGATCACCCAGCGCTTCTATGAGGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29094165 256 -  71996105 AGTTTAGGCC-AAAATCCCGGCGGGTTGGGCGGAGAGAGGGCGCGGCTAGCTGGACGGGGCTGACTGCAGGGACCGCGCCAGGGTCTCACACCCTCCAGGGAATGAACGGCTGCGACATGGGGCCGGACGGACGCCTCCTCCGCGGGTATCACCAGCACGCCTACGACGGCAAGGATTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGACACGGTAGCTCGGATCACCCAGCGCTTCTATGAGGC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2746818 256 -   3067355 AGTTTAGGCC-AAAATCTCGGCGGGTTGGGCGGAGAGAGGGCGCGGCTAGCTGGACGGGGCTGACTGCAGGGACCGGGCCAGGGTCTCACACCCTCCAGGGAATGAATGGCTGCGACATGGGGCCCGACGGACGCCTCCTCCGCGGGTATCACCAGCACGCCTACGACGGCAAGGATTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGACACGGCAGCTAGGATCACCCAGCGCTTCTATGAGGC
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     394796 250 -   1771730 AGTTTAGGCC-AAAATCCCCgcgggttgggcgg-----gggcggggctcgctgggcggagctgac-gcaggggcggggcCAGGGTCTCACACCTTCCAGAGGATGTATGGCTGCGACCTGGGGCCGGACGGGCGCCTCCTCCGCGGGTATCACCAGCACGCCTACGACGGCAAGGACTACATCGCCCTGAACGAGGACATGCGCTCCTGGACCGCCGCGGACACGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGC
i cebCap1.NW_016107755v1   C 0 I 26
s otoGar3.GL873550         16738243 254 -  18854210 aGTTTAGGAC-AAAATTCCGCCGAGTTgggcggggcg-gggcggggccgg-tgggcgcggctgaccgcgggggcggggccAGGGTCTCACACCCTCCAGGAGATGTACGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGTATCAGCAGCACGCCTACGACGGCGCCGACTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACCCGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGC
i otoGar3.GL873550         I 399 C 0
e saiBol1.JH378364            23987 823 +    187130 M
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30107017 741 + 171630274 M

a score=107935.000000
s hg38.chr6_GL000254v2_alt   987073 22 +   4827813 AGAGGAATATG-CAGAGGAGTTC
s panTro5.chr6             29949571 22 + 175400573 AGAGGAATATG-CAGAGGAGTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30183255 22 + 173848474 AGAGGAATATG-CAGAGGAGTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5983613 22 +   6154872 AGAGGAATATG-CAGAGGAGTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74689116 22 + 122973662 AGAGGAATATG-CAGAGGAGTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30177614 22 + 172585720 AGAGGAATATG-CAGAGGAGTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29840760 22 - 170955103 AGAGGAATATG-CAGAGGAGTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2890005 22 -   2996164 AGAGGAATATG-CAGAGGAGTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     638396 22 +    766320 AGATGAATATG-CAGAGGAGTTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29094421 22 -  71996105 AGATGGATATG-CAGAGGAGATC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2747074 22 -   3067355 AGAGGAATATG-CAGAGGAGTTC
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550         16738497 22 -  18854210 -GGAGGGTGCGTCGGAGGGAGAC
i otoGar3.GL873550         C 0 C 0
e saiBol1.JH378364            23987 823 +    187130 M
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     395046 26 -   1771730 I
e calJac3.chr4             30107017 741 + 171630274 M

a score=25549.000000
s hg38.chr6_GL000254v2_alt   987095 4 +   4827813 AGGA
s panTro5.chr6             29949593 4 + 175400573 AGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30183277 4 + 173848474 AGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5983635 4 +   6154872 AGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74689138 4 + 122973662 AGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30177636 4 + 172585720 AGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29840782 4 - 170955103 AGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2890027 4 -   2996164 AGGA
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     638418 4 +    766320 AGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29094443 4 -  71996105 AGGA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2747096 4 -   3067355 AGGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364            24828 4 +    187130 AGAG
i saiBol1.JH378364         M 823 C 0
s otoGar3.GL873550         16738519 4 -  18854210 AGGG
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e cebCap1.NW_016107755v1     395046 26 -   1771730 I
e calJac3.chr4             30107017 741 + 171630274 M

a score=791106.000000
s hg38.chr6_GL000254v2_alt   987099 102 +   4827813 CCTACCTGGAGGGCGAGTGCCTGGAGTTGCTCCGCAGATACTTGGAGAATGGGAAGGAGACGCTACAGCGCGCAGGTACCAGGGGCCATGGGCGCCTTCCCT
s panTro5.chr6             29949597 102 + 175400573 CCTACCTGGAGGGCGAGTGCCTGGAGTTGCTCCGCAGATACTTGGAGAACGGGAAGGAGACGCTACAGCGCGCAGGTACCAGGGGCCATGGGCGCCTTCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30183281 102 + 173848474 CCTACCTGGAGGGCGAGTGCCTGGAGTTGCTCCGCAGATACTTGGAGAACGGGAAGGAGACGCTACAGCGCGCAGGTACCAGGGGCCAAGGGCGCCTTCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5983639 102 +   6154872 CCTACCTGGAGGGCGAGTGCCTGGAGTTGCTCCGCAGATACTTGGAGAACGGGAAGGAGACGCTACAGCGCGCAGGTACCAGGGGCCATGGGCGCCTTCCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74689142 102 + 122973662 CCTACCTGGAGGGCGAGTGCCTGGAGTTGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTACAGCGCGCAGGTACCAGGGGCCACGGGCGCCTCCCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30177640 102 + 172585720 CCTACCTGGAGGGCGAGTGCCTGGAGTTGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTACAGCGCGCAGGTACCAGGGGCCATGGGCGCCTTCCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29840786 102 - 170955103 CCTACCTGGAGGGCGAGTGCCTGGAGTTGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTACAGCGCGCAGGTACCAGGGGCCATGGGCGCCTTCCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2890031 102 -   2996164 CCTACCTGGAGGGCGAGTGCCTGGAGTTGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTACAGCGCGCAGGTACCAGGGGCCATGGGCGCCTTCCCC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     638422 102 +    766320 CCTACCTGGAGGGCGAGTGCCTGGAGTTGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTACAGCGCGCAGGTACCAGTGGCCATAGGCGCCTTCCCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29094447 102 -  71996105 CCTACCTGGAGGGCGAGTGCCTGGAGTTGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTACAGCGCGCAGGTATCAGGGGCCATAGGCGCCTTCCCC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2747100 102 -   3067355 CCTACCTGGAGGGCGAGTGCCTGGAGTTGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTACAGCGCGCAGGTACCAGGGGCCATGGGCGCCTTCCCC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364            24832 102 +    187130 CCTACCTGGAGGGCGAGTGCCTGGAGTGGCTCCGCAAATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGACCAGGGGGAACCTCCCT
i saiBol1.JH378364         C 0 I 1
s cebCap1.NW_016107755v1     395072 102 -   1771730 CCTACCTGGAGGACGAGTGCCTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCAGGGGGAACCTCCCT
i cebCap1.NW_016107755v1   I 26 T 36114
s otoGar3.GL873550         16738523  95 -  18854210 CCTACCTGGAGGAGGAGTGTGTGGACTGGCTCCGCAGATACCTGGAGAACGGGAAGGACACCCTGCAGCGCGCGGGTAGGAGGGGC-------GCCTCCCAT
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30107017 741 + 171630274 M

a score=650168.000000
s hg38.chr6_GL000254v2_alt   987201 104 +   4827813 ATCTCCTGTAGATCTCTTGGGATGGCCTCGCACAAGGTTGGGAGGAAAGTGGGCCCAATGCTAGGATATCGCCCT-----------------CCCTCTAGTCCTGAGTAGGAAGAATCTTC
s panTro5.chr6             29949699 104 + 175400573 ATCTCCTGTAGATCTCTTGGGATGGCCTCGCACAAGGTTGGGAGGAAAGTGGGCCCAATGCTAGGATATCGCCCT-----------------CCCTCAGGTCCTGAGTAGGAAGAATCTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30183383 104 + 173848474 ATCTCCTGTAGATCTCTTGGGATGGCCTCGCACAAGGTTGGGAGGAAAGTGGGCCCAATGCTAGGATATCGCCCT-----------------CCCTCTGGTCCTGAGTAGGAAGAATCTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5983741 104 +   6154872 ATCTCCTGTAGATCTCTTGGGATGGCCTCGCACAAGGTTGGGAGGAAAGTGGGCCCAATGCTAGGATATCGCCCT-----------------CCCTCTGGTCCTGAGTAGGAAGAATCTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74689244 104 + 122973662 ATCTCCTGTAGATCTCTTGGGATGGCCTCGCACAAGGTGGGGAGGAAAGTGGGCCCAATGCTAGAATATCGCCCT-----------------CCCTCTGGTCCTGAGTAGGAAGAATCTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30177742 104 + 172585720 ATCTCCTGTAGATCTCTTGGGATGGCCTCGCACAAGGTGGGGAGGAAAGTGGGACTAATTCTAGAATATCGCCCT-----------------CTCTCTGGTCCTGAGTGGGAAGAATCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29840888 104 - 170955103 ATCTCCTGTAGATCTCTTGGGATGGCCTCGCACAAGGTGGGGAGGAAAGTGGGACTAATTCTAGAATATCGCCCT-----------------CTCTCTGGTCCTGAGTGGGAAGAATCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2890133 104 -   2996164 ATCTCCTGTAGATCTCTTGGGATGGCCTCGCACAAGGTGGGGAGGAAAGTGGGACTAATGCTAGAATATCGCTCT-----------------CTCTCGGGTCCTGAGTGGGAAGAATCTTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     638524 104 +    766320 ATCTCTTGTAGATCTCTTGGGATGGCCTCGCACAAGGTGGGGAGGAAAGTGGGACTAATGCTAGAATATCGCCCT-----------------CTCTCTGGTCCTGAGTGGGAAGAATCTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29094549 104 -  71996105 ATCTCCTGTAGATCTCTTGGGATGGCCTCGCACAAGGTGGGGAGGAAAGTGGGACTAATGCTAGCATATCGCCCT-----------------CTCTCTGGTCCTGAGTGGGAAGAATCTTT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2747202 104 -   3067355 ATCTCCTGTAGATCTCTTGGGATGGCCTCGCACAAGGTGGGGAGGAAAGTGGGACTAATGCTAGAATAGCGCCCT-----------------CTCTCTGGTCCTGAGTGGGAAGAATCTTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364            24935 121 +    187130 ATAGCCTATGGACCTCCCAGGATGGTCTTGCAGAAGGAGGAGAGGAAAATGGAACCAACACTAGAATATCACCCGTCTCCCCCCACCTCCCATCCCCCAGTCCTGAGGGAGAGGAATCCTC
i saiBol1.JH378364         I 1 C 0
s cebCap1.NW_016107755v1     359060 104 -   1771730 ATCGCCTGTAGACCTCCCAGACTGGCTTTGCAGAAGGAGGGGAGGAAAACGGGACCAACCCTAGAATATCACCCG-----------------CCCTCCGGTCCTGAGGGAGAGGAATCCTC
i cebCap1.NW_016107755v1   T 36114 I 36118
s otoGar3.GL873550         16738618  85 -  18854210 ATCTCCTGTATAATTC--GGGCTCCCGGTGCACAAGGAGGGAAGGAAAATGGCCCCGA----------------------------------CGCTCGGGTTCAGAGCAGGAAGGCGCCCC
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30107017 741 + 171630274 M

a score=1128406.000000
s hg38.chr6_GL000254v2_alt   987305 181 +   4827813 CTGGCTTTCGAGATCCGGTACCAGAGAGTGACTGTGAGAGTCCGCCCTGCTCTCTGGGACAATTAAGGGATGAAATCTCTGAGGGAAT-----------GGAGG----GA--------AGACAGTCCCTGGAATACCGATCCGCGGTCCCCTTTGAGCCCTCCAACAGCCTTGGGCCCCGTGACTTTT--CTCTCAAGTTTTGTTC
s panTro5.chr6             29949803 181 + 175400573 CTGGCTTTCGAGATCCCGTACCAGAGAGTGACTGTGAGAGTCCGCCCTGCTCTCTGGGACAATTAAGGGATGAAATCTCTGAGGGAAT-----------GGCGG----GA--------AGACAGTCCCTGGAATACCGATCCGCGGTCTCCTTTGAGCCCTCCAACAGCCTTGGGCCCCGTGACTTTT--CTCTCAAGTTTTGTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30183487 181 + 173848474 CTGGCTTTCGAGATCCCGTACCAGAGAGTGACTGTGAGAGTCCGCCCTGCTCTCTGGGACAATTAAGGGATGAAATCTCTGAGGGAAT-----------GGAGG----GA--------AGACAGTCCCTGGAATACCGATCCGCGGTCCCCTTTGAGCCCTCCAACAGCCTTGGGCCCCGTGACTTTT--CTCTCAAGTTTTGTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5983845 181 +   6154872 CTGGCTTTCGAGATCCCGTACCAGAGAGTGACTGTGAGAGTCCGCCCTGCTCTCTGGGACAATTAAGGGATGAAATCTCTGAGGGAAT-----------GGAGG----AA--------AGACAGTCCCTGGAATACCGATCCGCGGTCCCCTTTGAGCCCTCCAACAGCCTTGGGCCCCGTGACTTTT--CTCTCAAGTTTTGTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74689348 182 + 122973662 CTGGCTTTCCAGATCCTGTACCAGAGAGTGACTGTGAGAGTCCGCCCTGCTCTCTGGGACAATTAAGGGATGAAATCTCTGAGGGAAT-----------GGAGG----GA--------AGACAGTCCCTGGAATACCGATCCGCGGTTCCTTTTGAGCCCTCCAACAGCCTGGGGCCCCGTGACTTTT-CCTCTCAAGTTTTGTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30177846 171 + 172585720 CTGGCTTTCCAGATCCTGTACCAGAAAGTGACTGTGAGAGTCCACCCTGCTCTCTGGGACAATTAAGGGATGAAGTCTCTGAGGGAAT-----------GGAGG----GA--------AGACAGTCCCTGGAATACTGATCCACGATCCCTTTTG-----------AGCCTTGGGCCCCGTGGCTTTT-CCTCTCAAGCTTTGTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29840992 171 - 170955103 CTGGCTTTCCAGATCCTGTACCAGAAAGTGACTGTGAGAGTCCACCCTGCTCTCTGGGACAATTAAGGGATGAAGTCTCTGAGGGAAT-----------GGAGG----GA--------AGACAGTCCCTGGAATACTGATCCACGATCCCTTTTG-----------AGCCTTGGGCCCCGTGGCTTTT-CCTCTCAAGCTTTGTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2890237 171 -   2996164 CTGGCTTTCCAGATCCTGTACCAGAAAGTGACTGTGAGAGTCCACCCTGCTCTCTGGGACAATTAAGGGATGAAGTCTCTGAGGGAAT-----------GGAGG----GA--------AGACAGTCCCTGGAATACTGATCCACGATCCCTTTTG-----------AGCCTTGGGCCCCGTGGCTTTT-CCTCTCAAGCTTTGTTC
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     638628 171 +    766320 CTGGCTTTCCAGATCCTGTACCAGAAAGTGACTGTGAGAGTCCACCCTGCTCTCTGGGACAATTAAGGGATGAAGTCTCTGAGGGAAT-----------GGAGG----GA--------AGACAGTCCCTGGAATACTGATCCACGATCCCTTTTG-----------AGCCTTGGGCCCGGTGACTTTT-CCTCTCAAGCTTTGTTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29094653 171 -  71996105 CTGGCTTTCCAGATCCTGTACCAGAAAGTGACTGTGAGAGTCCACCCTGCTCTCTGGGACAATTAAGGGATGAAGTCTCTGAGGGAAT-----------GGAGG----GA--------AGACAGTCCCTGGAATACTGATCCACGATCCCTTTTG-----------AGCCTTGGGCCCCGTGACTTTT-CCTCTCAAGCTTTGTTC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2747306 182 -   3067355 CTGGCTTTCCAGATCCTGTACCAGAGAGTGACTGTGCGAGTCCACCCTGCTCTCTGGGACAATTAAGGGAGAAAGTCTCTGAGGGAAT-----------GGAGG----GA--------AGACAGTCCCTGGAATACTGATCCGCGATCCCCTTTGAGCCCTCCAACAGCCTTGGGACCCGTGACTTTT-CCTCTCAAGCTTTGTTC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364            25056 184 +    187130 CTGGGTTTCCAGATCCTGTACCAGAGAGTGAATATGAGGGCCTGCCCTGTTCTCTGATACAATTAAGGGTTGCAGTCTCTGAGGGAAA-----------GGAGGGGAAGA--------AGTCAATCCCAGGAATACTGATCAGGGGTTCCCTGTG-ACCCCACAGCAGTGCTGGGCACCAGGATTTTT--CTCTCCTGCCTTGTCC
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     395282 180 -   1771730 CTGGGTTTCCAGATCCTGTA-CAGAGAGTGACACTGAGGGCCTGCCCTGTTCTCTGATACAATTAAGGGTTGCAGTCTCTGAGGGAAA-----------GGAGGG---GA--------AGTCAATCACAGGAATACTGATCAGGGGTTCCCTGTG-ACTCCACAGCAGCGTTGGGCACCAGGATTTTT--CTCTCCTGCCTTGTCC
i cebCap1.NW_016107755v1   I 36118 C 0
s otoGar3.GL873550         16738703 201 -  18854210 CTAAGTGTCCGGATCCTGTACTAGAGAGTGATTCTGAGGGCCCGGCCTTCCCTCTGGGACAGTTAAGGGATGAAGTCTCCGAGGGAACGGGGTGGGGGAGGAGG----GAGGGGTGACAGACAGTCCCTTAAATACCAGTCAGCGGTTCCTTCTG-ACCGGGCAGCAGCCTTGTGGACCATGACCTTTTTTTCTCAGACCTTGGTC
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e calJac3.chr4             30107017 741 + 171630274 M

a score=1542721.000000
s hg38.chr6_GL000254v2_alt   987486 188 +   4827813 TCTGCCTCACACTCAATGTGTTTGGGGCTCTGATTCC----------AGTCCCTCGGCCTCCACTTAGGTCAGGGCCAGAAGTCCCTGCTCCCCACTCAGAGACTCGAACTTTCCAAGGAATAGGAGA-TTTTCCCAGGTGTCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCCCCACCCCAGGTGTCCTGT
s panTro5.chr6             29949984 188 + 175400573 TCTGCCTCCCACTCAATGTGTTTGGGGCTCTGATTCC----------AGTCCCTCGGCCTCCACTTAGGTCAGGGCCAGAAGTCCCTGCTCCCCCCTCAGAGACTCGAACTTTCCAAGGAATAGGAGA-TTTTCCCAGGTGTCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCTCCACCCCAGGTGTCCTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30183668 188 + 173848474 TCTGCCTCACACTCAGTGTGTTTGGGGCTCTGATTCC----------AGTCCCTCGGCCTCCACTTAGGTCAGGGCCAGAAGTACCTGCTCCCCGCTCAGAGACTCGAACTTTCCAAGGCATAGGAGA-TTTTCCCAGGTGTCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCCCCACCCCAGGTGTCCTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5984026 187 +   6154872 TCTGCCTCCCACTCAATGTGTTTGGGGCTCTGATTCC----------AGTCCCTCGGCCTCCACTTAGGTCAGGGCCAGAAGTCCCTGCTCCCC-CTCAGAGACTCGAACTTTCCAAGGAATAGGAGA-TTTTCCCAGGTGTCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCCCCACCCCAGGTGTCCTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74689530 198 + 122973662 TCTGCCTCACACTCAATGTATTTGGGGCTCTGATTCCAGCTCTTCTGAGTCCCTCGGCCTCCACTTAGGTCAGGGCCAGAAGTCCCTGCTCCCCTCTCAGAGACTCGAACTTTCCAAGGAATAAGAGA-TTTTCCCAGGTGTCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCCGAACCCTAGGTGTCCTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30178017 198 + 172585720 TCTGCCTCACACTGAATGTGTTTGGGGCTCTGATTCCAGCTCTTATGAGTCCCTCGGCCTCCACTTAAGTCAGGGCCAGAAGTCCCTGCTCCCCCCTCAGAGACTCGAACTTTCCAAGGAATAAGAGA-TTTTCCCAGGTGCCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGATCCCTTCCCCACCCCAGGTGTCCTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29841163 198 - 170955103 TCTGCCTCACACTGAATGTGTTTGGGGCTCTGATTCCAGCTCTTATGAGTCCCTCGGCCTCCACTTAAGTCAGGGCCAGAAGTCCCTGCTCCCCCCTCAGAGACTCGAACTTTCCAAGGAATAAGAGA-TTTTCCCAGGTGCCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGATCCCTTCCCCACCCCAGGTGTCCTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2890408 199 -   2996164 TCTGCCTCACACTGAATGTGTTTGGGGCTCTGATTCCAGCTCTTATGAGTCCCTCGGCCTCCACTTAAGTCAGGGCCAGAAGTCCCTGCTCCCCCCTCAGAGACTCGAACTTTCCAAGGAATAAGAGATTTTTCCCAGGTGCCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGATCCCTTCCCCACCCCAGGTGTCCTGT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     638799 198 +    766320 TCTGCCTCACACTGAATGTGTTTGGGACTCTGATTCCAGCTCTTCTGAGTCCCTCAGCCTCCACTTAAGTCAGGGCCAGAAGTCCCTGCTCCCACCTCAGAGACTCGAACTTTCCAAGGAATAAGAGA-TTTTCCCAGGTGCCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTTCCTTCCTCACCCCAGGTGTCCTGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29094824 198 -  71996105 TCTGCCTCACACTGAATGTGTTTGGGACTCTGATTCCAGCTCTTCTGAGTCCCTTGGCCTCCACTTAAGTCAGGGCCAGAAGTCCCTGCTCCCACCTCAGAGACTCGAACTTTCCAAGGAATAAGATA-TTTTCCCAGGTGCCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCCTCACCCCAGGTGTCCTGT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2747488 198 -   3067355 TCTGCCTCACACTGAATGTGTTTGGGGCTCTGATTCCAGCTCTTCTGAGTCCCTTGGCCTCCACTTAGGTCAGGGCCAGAAGTCCCTGCTCCCCCCTCAGAGACTCGAACTTTCCAAGGAATAGGAGA-TTTTCCCAGGTGCCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCCTCACCCCAGGTGTCCTGT
i colAng1.NW_012115566v1   C 0 M 385
s calJac3.chr4             30107762 198 + 171630274 TCTGCCTCACACTCAATGCGTTTTAAGGTCTGATTCTAGCTTTTCTGAGTCCCTCGGCCTCCACTCAGGTCAGGACCAGAAGTTGCTGTTTCATTCTCAGAGACTATAACTTTCCAAGGAATAGGAGA-TTATCCCAGGTGCCTGTGTCCAGGCCAGTGTCTGGGTTCTGTGGTCCCTTCCCCACCCCAGGTGTCCTGT
i calJac3.chr4             M 741 C 0
s saiBol1.JH378364            25240 197 +    187130 TCTTTCTCACATTCAATGTGTGTGGGGGTTTGACTCCAGCTCCTCTGAGTCCCTTGGCCTCCACTCAGATAAGGGCCAGAAGTCCCAGTTCCCCCCTT-TAGACTAGAACTTTCCAAGGAACAGGATA-TTATCCCAGGTGCCTGTGTCCAGGCTGGTGTCTGTGTTCTGTGCTCCCTTCCCTATCCCAGGTGTCCTGC
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     395462 198 -   1771730 TCTGCCTCACATTCAATATGCGTGGGGGTCTGACTCCAGCTCCTCTGAGTCCCTTGGCCTCCACTCAGATCAGGGCCAGAAGTCCCAGTTCCCCCCCTTGAGACTAGAACTTTCCAAGGAAAAGGGTA-TTATCTCAGGTGCCTGTGTCCAGGCTGGTGTCTGTGTTCTGTGCTCCCTTCCCTATCCCTGGTGTCCTGT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         16738904 191 -  18854210 TCTGCCC--CACTCAGTGTTTTTGGAGGTCTGATTCCAGCCCTTCCGGGTCACTCAGTCTCCAGTT-GGTCAGGACCAGAAGCCCCTGTTCT---CTTAGAGACCGGAAGTTT-CAAGGAGTAGGAGA-TCATTCCAGACCCTTGTGTCCAGGCTGCGGTCTGGGTTTTGCACTCCTTTGCTCACTCCATTTGTCCTGT
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I

a score=1647992.000000
s hg38.chr6_GL000254v2_alt   987674 225 +   4827813 CCATTCTCAGGTTGGTCACATGGGTGCTGCTG---------GGGTTTCCCATGAGGAGTGCAAAGTGCCTGAATTTTCTGACTCTTCT---CAGATCCTCCAAAGGCACACGTTGCCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACGCTGACCTGGCAGCGGGATGGGGAGGAACAGACCCAGGACACAGAGCTT
s panTro5.chr6             29950172 225 + 175400573 CCATTCTCAGGTTGGTCACATGGGTGCTGCTG---------GGGTTTCCCATGAGGAGTGCAAAGTGCCTGAATTTTCTGACTCTTCT---CAGATCCTCCAAAGGCACACATTGCCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACGCTGACCTGGCAGCGGGACGGGGAGGAACAGACCCAGGACACAGAGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30183856 225 + 173848474 CCATTCTCAGGTTGGTCACATGGGTGCTGCTG---------GGGTTTCCCATGAGGAGTGCAAAGTGCCTGAATTTTCTGATTCTTCT---CAGATCCTCCAAAGGCACACGTTGCCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACGCTGACCTGGCAGCGGGACGGGGAGGAACAGACCCAGGACACAGAGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5984213 225 +   6154872 CCATTCTCAGGTTGGTCACATGGGTGCTGCTG---------GGGTTTCCCATGAGGAGTGCAAAGTGCCTGAATTTTCTGACTCTTCT---CAGATCCTCCAAAGGCACACGTTGCCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACGCTGACCTGGCAGCGGGATGGGGAGGAACAGACCCAGGACACAGAGCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74689728 225 + 122973662 CCATTCTCAGGTTGGTCACATGGGTGCTGCTG---------GGGTTTCCCATGAGGAGTGCAAAGTGCCTGAATTTTCTGACTCTTCT---CAGATCCTCCAAAAGCACACGTTGCCCACCATCCCATCTCCGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACATTGACCTGGCAGCGGGATGGGGAGGAACAGACCCAGGACACAGAGCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30178215 225 + 172585720 CCATTCTCAGGACGGTCACATGAGCACTGCTG---------GGGTTCCCAATGAGGAAGGCAAAGTACCTGAATTTTCTGACTCTGCT---CAGATCCTCCAAAGGCACACGTTGCCCACCACCCCATCTCTGACCGTGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCCGAGATCACACTGACCTGGCAGCGGGACGGGGAGGAACAGACCCAGGACACGGAGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29841361 225 - 170955103 CCATTCTCAGGACGGTCACATGAGCACTGCTG---------GGGTTCCCAATGAGGAAGGCAAAGTACCTGAATTTTCTGACTCTGCT---CAGATCCTCCAAAGGCACACGTTGCCCACCACCCCATCTCTGACCGTGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCCGAGATCACACTGACCTGGCAGCGGGACGGGGAGGAACAGACCCAGGACACGGAGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2890607 225 -   2996164 CCATTCTCAGGACGGTCACATGAGCACTGCTG---------GGGTTCCCAATGAGGAAGGCAAAGTACCTGAATTTTCTGACTCTGCT---CAGATCCTCCAAAGGCACACGTTGCCCACCACCACATCTCTGACCGTGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCCGAGATCACACTGACCTGGCAGCGGGACGGGGAGGAACAGACCCAGGACACGGAGCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     638997 225 +    766320 CCATTCTCAGGACGGTCACATGAGCACTGCTG---------GGGTTCCCAATGAGGAAGGCAAAGTACCTGAATTTTCTGACTCTGCT---CAGATCCTCCAAAGGCACACGTTGCCCACCACCCCATCTCTGACCGTGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCTGAGATCACACTGACCTGGCAGCGGGACGGGGAGGAACAGACCCAGGACACGGAGCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29095022 225 -  71996105 CCATTCTCAGGACGGTCACATGAGCACTGCTG---------GGGTTCCCAATGAGGAAGGCAAAGTACCTGAATTTTCTGACTCTGCT---CAGATCCTCCAAAGGCACACGTTGCCCACCACCCCATCTCTGACCGTGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCCGAGATCACACTGACCTGGCAGCGGGACGGGGAGGAACAGACCCAGGACACGGAGCTT
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30107960 236 + 171630274 CCATTCTCA-GATGGTCACATGGGTGCTGCTGTGGTCTCATGGGTATTCCATGAGAGATGCCAAGTGCCTGAATGTTCTGACCCTTCCTGTCAGACCCCCCAAAGACGCATGTGACCCACCACCTTGTCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTAGGCTTCTACCCTGCAGAGATCACACTGACCTGGCAGAAGGATGGGGAGGACCAAACTCAGGACGCTGAGCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378364            25437 228 +    187130 CCATTCTCAGGATGGTCACATGGGAGCTGCTG---------GGGTGTCCCATGAGAGATGCTAAGTGCCTGAATTTTCTGACTCTTCCCTGCAGAGCCCCCCAAGACACATGTGTCCCATCATCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTTGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACACAAGACATAGAGCTG
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     395660 228 -   1771730 CCATTCTCAGGATGGTCACATAGGAGCTGCTG---------GGGTGTCCCATGAGAGATGCTAAGTGCCTGAATTTTCTGACTCTTTCCTGCAGAGCACCCCAAGACACACGTGTCACATCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACAGAGCTG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         16739095 227 -  18854210 CCATTCTCAGGAT-GTCACATGAGTGCTGCTG---------GAGTGTCCCACAAGGGATGCAAAGTGCCTGAATTTTCTGACTCTTCCCCTCAGATCCCCCAGAGACACGTGTGACCCACCACCCCACCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCAGGGCTTCTACCCGGCAGAGATCACACTGACCTGGCAGCGGGATGGGGAGGATCAGACTCAGGACATGGAGCTT
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e colAng1.NW_012115566v1    2747686 385 -   3067355 M

a score=570001.000000
s hg38.chr6_GL000254v2_alt   987899 61 +   4827813 GTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCCGCTGTGGTGGTGCCTT
s panTro5.chr6             29950397 61 + 175400573 GTGGAGACCAGGCCTGCAGGGGATGGAAACTTCCAGAAGTGGGCTGCTGTGGTGGTGCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30184081 61 + 173848474 GTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCCGCTGTGGTGGTGCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5984438 61 +   6154872 GTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCCGCTGTGGTGGTGCCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74689953 61 + 122973662 GTGGAGACCAGGCCTGCAGGGGATGGAACGTTCCAGAAGTGGGCCGCTGTGGTGGTGCCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30178440 61 + 172585720 GTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29841586 61 - 170955103 GTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2890832 61 -   2996164 GTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTT
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     639222 61 +    766320 GTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29095247 61 -  71996105 GTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2748071 61 -   3067355 GTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTT
i colAng1.NW_012115566v1   M 385 C 0
s calJac3.chr4             30108196 61 + 171630274 GTGGAGACCAGGCCAGCAGGGGATGGAACCTTCCAGAAGTGGACAGCTGTGGTGGTGCCTT
i calJac3.chr4             C 0 I 610
s saiBol1.JH378364            25665 61 +    187130 GTAGAGACCAGGCCCACGGGGGATGGAAACTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTT
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     395888 61 -   1771730 GTAGAGACCAGGCCCATGGGGGATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         16739322 61 -  18854210 ATAGAGACCAGGCCTGCAGGAGATGGAACGTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTT
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I

a score=384922.000000
s hg38.chr6_GL000254v2_alt   987960 44 +   4827813 CTGGAGAGGAACAGAGATACACATGCCATGTGCAGCACGAGGGG
s panTro5.chr6             29950458 44 + 175400573 CTGGAGAGGAACAGAGATACACGTGCCATGTGCAGCACGAGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30184142 44 + 173848474 CTGGAGAGGAACAGAGATACACGTGCCATGTGCAGCACGAGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5984499 44 +   6154872 CTGGAGAGGAACAGAGATACACGTGCCATGTGCAGCACGAGGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74690014 44 + 122973662 CTGGAGAGGAACAGAGATACACATGCCATGTGCAGCACGAGGGG
i nomLeu3.chr1a            C 0 I 12010
s rheMac8.chr4             30178501 44 + 172585720 CCGGAGAGGAGCAGAGATACACGTGCCATGTGCAACACGAAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29841647 44 - 170955103 CCGGAGAGGAGCAGAGATACACGTGCCATGTGCAACACGAAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2890893 44 -   2996164 CCGGAGAGGAGCAGAGATACACGTGCCATGTGCAACACGAAGGG
i macNem1.NW_012011356v1   C 0 C 0
s cerAty1.NW_012002711v1     639283 44 +    766320 CCGGAGAGGAGCAGAGATACACCTGCTATGTGCAACACGAAGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29095308 44 -  71996105 CCGGAGAGGAGCAGAGATATACCTGCTATGTGCAACACGAAGGG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2748132 44 -   3067355 CTGGAGAGGAGCAGAGATACACGTGCCATGTGCAACACGAAGGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30108867 44 + 171630274 CTGGAGAAGAGCAGAGATACATGTGCCATGTGAAGCACAAGGGG
i calJac3.chr4             I 610 C 0
s saiBol1.JH378364            25726 44 +    187130 CTGGAGAGGAGCAGAGATACACATGTCATGTGCAGCATGAGGGG
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     395949 44 -   1771730 CTGGAGAGGAGCAGAGATACACATGCCATGTGCACCACGAGGGG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         16739383 44 -  18854210 CTGGAGAAGAGCAGAGATACACATGCCATGTGCAGCATGAGGGG
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I

a score=3883315.000000
s hg38.chr6_GL000254v2_alt   988004 602 +   4827813 CTGCCCCAGCCCCTCATCC----------------------------------TGAGATGGGGTAAGGAGGGAGAT-GGGTAAAGAGGGGAACGAGGGGTCATGTCTTTTCTCAGGGAAAGCA--GGAGCCCTTCTGGAGCTCTTCAGCAGGGTCAGGGCTGAGGCCTGGAGATCAGGGCCCCTCACCTTCCCTTCCTTTCCCAGAGCAGTCTCCCCAGCCCACCATCCCCATCGTGGGCATCGTTGCTGGCCTTGTTGTCCTTGGAGCTGTGGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAGAGCTCAGGTA-GGAAGGGGTGAGGAGTGGAGTCTGAGTTTTCTTGTCCCACTGGGGGTTGCAAGCCCCAAGTAGAAGTGTGCCCTGCCTCATTACTGGGAAGCACCATCCACACTCATGGGTCTACCCAGCCT-GGGCCCTGTGTGCCAGCACCTACTCAT-TTGTAAAGCTCCTGTGAAAATGAAGGACAGATTCTTCA--CTTCGATGATTATGGTGGTGATGGGACCTGA-TCCCAGCAGTCACAAAT--CACAGGGGAAGG-TCCCTGCTGATGACAGACCT-CAGGAGGGCAGTTGGTCCAGGACCCACATCTGCTTTCTTCATATTTC
s panTro5.chr6             29950502 602 + 175400573 CTGCCCCAGCCCCTCACCC----------------------------------TGAGATGGGGTAAGGAGGGAGAT-GGGTAAAGAGGGGAATGAGGGGTCATGTCTTTTCTCAGGGAAAGCA--GGAGGCCTTCTGGAGCTCTTCAGCAGGGTCAGGGCTGAGGCCTGGAGATCAGGGCCCCTCACCTTCCCTTCCTTTCCCAGAGCAGTCTCCCCAGCCCACCATCCCCATCGTGGGCATCGTTGCTGGCCTTGTTGTCCTTGGAGCTGTGGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAGAGCTCAGGTAGGGAAGGGGTGAGGAGTGGAGTCTGAGTTTTCTTGTCCCACTGGGGGTTGCAAGCCCCAAGTAGAAGTGTGCCCTGCCTCATTACTGGGAAGCACCATCCACACTCATGGGTCTACCCAGCCT-GAGCCCTGTGTGCCAGCACCTACTCGT-TTGTAAAGCTCCTGTGAAAATGAAGGACAGATTCTTCA--CTTCGATGATTATGGTGGTGATGGGACCTGA-TCCCAGCAGTCACAAAT--CACAGGGGAAGG-TCCCTGCTGATGACAGACCT-CAGGAGGGCAGTTGGTCCAGGACCCACATCTGCTTT-TTCATATTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30184186 602 + 173848474 CTGCCCCAGCCCCTCACCC----------------------------------TGAGATGGGGTAAGGAGGGAGAT-GGGTAAAGAGGGGAATGAGGGGTCATGTCTTTTCTCAGGGAAAGCA--GGAGCCCTTCTGGAGCTCTTCAGCAGGGTCAGGGCTGAGGCCTGGAGATCAGGGCCCCTCACCTTCCCTTCCTTTCCCAGAGCAGTCTCCCCAGCCCACCATCCCCATCGTGGGCATCGTTGCTGGCCTTGTTGTCCTTGGAGCTGTGGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAACAGCTCAGGTA-GGGAAGGGTGAGGAATGGAGTCTGAGTTTTCTTGTCCCACTGGGGGTTGCAAGCCCCAAGTAGAAGTGTGCCCTGCCTCATTACTGGGAAGCACCATCCACACTCATGGGTCTACCCAGCCT-GAGCCCTGTGTGCCAGCACCTACTCAT-TTGTAAAGCTCCTGTGAAAATGAAGGACAGATTATTCA--CTTCGATGATTATGGTGGTGATGGGACCTGA-TCCCAGCAGTCACAAAT--CACAGGGGAAGG-TCCCTGCTGATGACAGACCT-CAGGAGGGCAGTTGGTCCAGGACCCACATCTGCTTTCTTCATATTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5984543 603 +   6154872 CTGCCCCAGCCCCTCACCC----------------------------------TGAGATGGGGTAAGGAGGGAGAT-GGGTAAAGAGGGGAATGAGGGGTCATGTCTTTTCTCAGGGAAAGCA--GGAGCCCTTCTGGAGCTCTTCAGCAGGGTCAGGGCTGAGGCCTGGAGATCAGGGCCCCTCACCTTCCCTTCCTTTCCCAGAGCAGTCTCCCCAGCCCACCATCCCCATCGTGGGCATCGTTGCTGGCCTTGTTGTCCTTGGAGCTGTGGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAGATCTCAGGTAGGGAAGGGGTGAGGAGTGGAGTCTGAGTTTTCTTGTCCCACTGGGGGTTGCAAGCCCCAAGTAGAAGTGTGCCCTGCCTCATTACTGGGAAGCACCATCCACACTCATGGGTCTACCCAGCCT-GGGCCCTGTGTGCCAGCACCTACTCAT-TTGTAAAGCTCCTGTGAAAATGAAGGACAGATTCTTCA--CTTCGATGATTATGGTGGTGATGGGACCTGA-TCCCAGCAGTCACAAAT--CACAGGGGAAGG-TCCCTGCTGATGACAGACCT-CAGGAGGGCAGTTGGTCCAGGACCCACATCTGCTTTCTTCATATTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30178545 600 + 172585720 CTGCCCCAGCCCCTCACCC----------------------------------TGAGATGGGGTAAGGAGTGAGATGGGGTAAGGAAGGGGATGAGGGGTCGCGTCTCTTCTCAGAGAAAGCA--GGAGCCCTTCTGGAGCCCTTCTGCAGAGCCAGGGCTGAGG-CTGG-GGTCAGGGGCCCTCACCTTCCTCTCCTTTCCCAGAGTCGTCTTCTCAGCCCACCATCCCCATTGTGGGCATCGTTGCTGGCCTGGCTGTCCTAGCAGTTGTGGTTACTGGAGCTGTGGTCACTGCTGTAATGTGGAGGAGAAAGAGCTCAGGTAGGGAAGGGGTGAGGAGAGGAGTCTGAGTTTTCTTGTCCCACTGGGGGTTGCAAGCCCCAGGTAGAAGTGTGTTCTGCCTCGTAACTGGGAAGCACCATCCACACACACAGGCCTACCCAGCCT-GGGCCCTCTGTGCCAGCTCTAACTCAT-TTGTAAAGCACTTGTGAAAATGAAGA-CAGATTCTTCA--CTTCAATGATTGTGGTGGTG--GGGACCTGATTCCCAGCAGTCACAACT--CACAGGGGAAGG-TCTCTGCTGATGACAGACCT-CAGGAGGGCAGTTGGTCCAGGACCCACATCTGCTTTCTTCGTATTTC
i rheMac8.chr4             C 0 I 19
s macFas5.chr4             29841691 600 - 170955103 CTGCTCCAGCCCCTCACCC----------------------------------TGAGATGGGGTAAGGAGTGAGATGGGGTAAGGAAGGGGATGAGGGGTCGCGTCTCTTCTCAGAGAAAGCA--GGAGCCCTTCTGGAGCCCTTCTGCAGAGCCAGGGCTGAGG-CTGG-GGTCAGGGGCCCTCACCTTCCTCTCCTTTCCCAGAGTCGTCTTCTCAGCCCACCATCCCCATTGTGGGCATCGTTGCTGGCCTGGCTGTCCTAGCAGTTGTGGTTACTGGAGCTGTGGTCGCTGCTGTAATGTGGAGGAGAAAGAGCTCAGGTAGGGAAGGGGTGAGGAGAGGAGTCTGAGTTTTCTTGTCCCACTGGGGGTTGCAAGCCCCAGGTAGAAGTGTGTTCTGCCTCGTAACTGGGAAGCACCATCCACACACACAGGCCTACCCAGCCT-GGGCCCTCTGTGCCAGCTCTAACTCAT-TTGTAAAGCACTTGTGAAAATGAAGA-CAGATTCTTCA--CTTCAATGATTGTGGTGGTG--GGGACCTGATTCCCAGCAGTCACAACT--CACAGGGGAAGG-TCTCTGCTGATGACAGACCT-CAGGAGGGCAGTTGGTCCAGGACCCACATCTGCTTTCTTCGTATTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012011356v1    2890937 601 -   2996164 CTGCCCCAGCCCCTCACCC----------------------------------TGAGATGGGGTAAGGAGTGAGATGGGGTAAGGAAGGGGATGAGGGGTCGCGTCTCTTCTCAGGGAAAGCA--GGAGCCCTTCTGGAGCCCTTCTGCAGAGCCAGGGCTGAGGCCTGG-GGTCAGGGGCCCTCACCTTCCTCTCCTTTCCCAGAGTCGTCTTCTCAGCCCACCATCCCCATTGTGGGCATCGTTGCTGGCCTGGCTGTCCTAGCAGTTGTGGTCACTGGAGCTGTGGTCGCTGCTGTAATGTGGAGGAGGAAGAGCTCAGGTAGGGAAGGGGTGAGGATCGGAGTCTGAGTTTTCTTGTCCCACTGGGGGTTGCAAGCCCCAGGTAGAAGTGTGTTCTGCCTCGTAACTGGGAAGCACCGTCCACACACACAGGCCTACCCAGCCT-GGGCCCTCTGTGCCAGCTCTAACTCAT-TTGTAAAGCACTTGTGAAAATGAAGA-CAGATTCTTCA--CTTCAATGATTGTGGTGGTG--GGGACCTAATTCCCAGCAGTCACAACT--CACAGGGGAAGG-TCTCTGCTGATGACAGACCT-CAGGAGGGCAGTTGGTCCAGGACCCACATCTGCTTTCTTCGTATTTC
i macNem1.NW_012011356v1   C 0 I 19
s cerAty1.NW_012002711v1     639327 635 +    766320 CTGCCCCAGCCCCTCACCCTGAGATGGGGTAAGGAGTGAGATGGGGTAAGGAGTGAGATGGGGTAAGGAGTGAGATGGGGTAAGGAAGGGGATGAGGGGTCGCGTCTCTTCTCAGGGAAAGCA--GGAGCCCTTCTGGAGCCCTTCTGCAGAGCCAGGGCTGAGGCCTGG-GGTCAGGGGCCTTCACCTTCCTCTCCTTTCCCAGAGCCGTCTTCTCAGCCCACCATTCCCATTGTGGGCATCGTTGCTGGCCTGGCTGTCCTAGCAGTTGTGGTCACTGGAGCTATGGTCGCTGCTGTAATGTGGAGGAGGAAGAGCTCAGGTAGGGAAGGGGTGAGGATCGGAGTCTGAGTTTTCTTGTCCCACTGGGGGTTGCAAGCCCCAGGTAGAAGTGTGTTCTGCCTCGTTACTGGGAAACACCATCCACACACACAGGCCT-TCCAGCCT-GGGCTCTGTGTGCCAGCTCTTACTCAT-TTGTAAAGCACTTGTGAAAATGAAGGCCAGATTCTTCA--CTTCAATGATTGTGGTGGTG--GGGACCTGATTCCCAGCAGTCACAACT--CACAGGGGAAGG-TCTCTGCTGATGACAGACCT-CAGGAGGGCAGTTGGTCCATGACCCATATCTGCTTTCTTCTTATTTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29095352 602 -  71996105 CTGCCCCAGCTCCTCACCC----------------------------------TGAGATGGGGTAAGGAGTGAGATGGGGTAAGGAAGGGGATGAGGGGTCGCGTCTCTTCTCAGAGAAAGCA--GGAGCCCTTCTGGAGCCCTTCTGCAGAGCCAGGGCTGAGACCTGG-GGTCAGGGGCCCTCACCTTCCTCTCCTTTCCCAGAGTCGTCTTCTCAGCCCACCATCCCCATTGTGGGCATCGTTGCTGGCCTGGCTGTCCTAGCAGTTGTGGTCACTGGAGCTATGGTCGCTGCTGTAATGTGGAGGAGGAAGAGCTCAGGTAGGGAAGGGGTGAGGAGAGGAGTCTGAGTTTTCTTGTCCCACTGGGGGTTGCAAGCCCCAGGTAGAAGTGTGTCCTGCCTCGTTACTAGGAAGCACCATCCACACACACAGGCCTACCCAGCCT-GGGCCCTCTGTGCCAGCTCTTACTCAT-TTGTAAAGCACTTGTGAAAATGAAGGACAGATTCTTCA--CTTCAATGATTATGGTGGTG--GGGACCTGATTCCCAGCAGTCACAAAT--CACAGGGGAAGG-TCTCTGCTGATGACAGACCT-CAGGAGGGCAGTTGGTCCAGGACCCACATCTGCTTTCTTCTTATTTC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2748176 591 -   3067355 CTGCCCCAGCCCCTCACCC----------------------------------TGAGATGGGGTAAGGAGTGAGACGGGGTAAGGAAGGGAATGAGGGGTCGCGTCTCTTCTCAGGGAAAGCA-------------GGAGCCCTTCTGCAGACTCAGGGCTGAGGCCTGG-GGTCAGGGGCCCTCACCTTCCTCTTCTTTCCCAGAGCCATCTTCCCAGTCCATCATCCCCATCGTGGGCATCGTTGCTGGCCTGGCTGTCCTAGCAGTTGTGGTCACTGGAGCTGTGGTTGCTGCTGTGATGTGGAGGAGGAAGAGCTCAGGTAGAGAAGGGGTGAGCAGCGGAGTCTGAGTTTTCTTGTCCCACTGGGGATTGCAAGCCCCAGGTAAAAGTGTGTCCTGCCTCGTTACTGGGAAGCACCATCCACACACACAGGCCTACCCAGCCT-GGGCCCTGTGTGCCAGCTCTTACTCAT-TTGTAAAGCACTTGTGAAAACGAAGGACAGATTCTTCA--CTTCAATGATTGTGGTGGTG--GGGATCTGATTCCCAGCAGTCACAAAT--CACAGGGGAAGG-TCTCTGCTGATGACAGACCT-CAGGAGGGCAGTTGGTCCAGGACCCACATCTGCTTTCTTCATATTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30108911 600 + 171630274 CTGCCCAAACCCCTCACCC----------------------------------TGAGATGGGGTAAGGAGGGGGATGGGGTAA-GAGGGGGATGAGGTGTCACATCTCTTCTCAGGGAAAGCA--GGAGCCCATCTGGAGCCTTTCAGCAGGGTCAGGGCTGAGACCTGGGGGTCAGGGCCCTTCACGTTCCCCTCCTTTCCCAGAGCCGTCTTCCCAGCTCACCATCCCCATCGTGGGCATCGTTGCTGACTTGGTTTTCTTTGGAGCTGTGGTCATCGGAGCTGTGGTGACTGCTATGATGTGGAGGAGGAAGAGCTCAGGTAGGGAAACGGTGAGGGGTGAGGTCTGGGTTTTCTTGTCCCACTCAGGGTTTCAAGCCGCAGGTAGAAGTGTTCCCTGCCTCATTAGTGGAAAGCACCATCCACA--CATGGGCCAACCCAGCCTGGGGCCCTGTTTGCCAGTACTTACTGTT-TTGTGAAGCACATGTGACAATGAAGGACAGATGTATCACCCCTTGATGACTGTGGTGTTG--GGGTCCTGA-TTTCAGCATTCATGAGT----CAGGGGAAGT-TCCTTGCTAAGGACAGACCT-TAGGAGGGCGGTTGCTCCAGAACCCACATCTGCTTTCCTCGAGTTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378364            25770 581 +    187130 CTGTGCGAGCCCCTCACCC----------------------------------TGA-----------------GATGGGGTAA-GAAGGGGATGGGGTGTCATGTCTCTT---AGGGAAAGCA--GGAGCCCCTCTGCAGCACTTCAGCAGGATCAGGGCTGGGACCT-GGGATCAGGGCCCCTCACCTTCTCCTCCTTTCCCAGAGCCGTCTTCCCAGCCCACCATCCCCATCGTGGGCATCACTGCTGTCCTGGCTGTCCTTGGAGCTGTAGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAGAGCTCAGGTGAGGAAGGGGTGAGGAGTGGGGTCTGAGATTTCTTGTCCCACTGAGGGTTCCAAGCCCCAGGTAGAAGTGTACCCTGCCTGGTTACTGGGAAGCATCATCCACACTCATGAGCCGACCTAGTCT-GGGCCCTGTGTGCCAGCACTTACTCTT-GTGTAAAGCACCTGTGACAATGAAGGACAGATGTGTCA--CCTTGATGATTGTGGTGATG--GGA-CCTGA-TCCCAGCAGTCACAGGTATCACAAGGGAAGG-TCCGTGCTGAGGACAGTCCT-TAGGAGGGCAGTTGGTCCAGGACCCACACCTGCTTTCCTTGTTTTTC
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     395993 580 -   1771730 CTGTCTGAGCCCCTCACCC----------------------------------TGA-----------------GATGGGGTAA-GGAGGGGATGGGACGTCATACCTTTT---GGGGAAAGCA--GGAGCCCCTCTGCAGCACTTCAGCAGGGTCAGGTCTGGGACCTGGGGGTCAGGGCCCCTCACCTTCCCCTCCTTTCCCAGAGCCGCCTTCCCAGCCCACCATCCCCATCGGGGGCATCGTTGCTGGCCTGGTTGTCCTTGGAGCTGTAGTCACTGGAGCTGTGGTCACTGCTGTGATGTGGAGGAAGAAGAGCTCAGGTGAGGAAGGGGTGAGGAGTGGGGTCTGAGTTTTCTTGTCCCACTGGGGATTTCAAGCCCCAGGTAGAAGTGTGCCCTGCCTGGTTACTGGGAAGCATCATCCACACTCATGAGCCGACCCAGCCT-GGGCCCTGTGTGCCAGCACTTAA-CTC-TTGTAAAGCACCTGTGACAATGAAGGACAGATGTATCA--CCTTGATGACTGTGGTGATG--GGGACCTGA-TCCCAGCAGTCACAGGT--CACAAGGGAAGG-TCCCTGCTGAGGACAGTCCT-TAGAAGGGCAGTTGGTGCAGGACCCACACCTGCTTTCCTTGTTTTTC
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         16739427 571 -  18854210 CTGCCAGAGCCCCTCATCC----------------------------------TGAGATGGGGTAAGGGGGGAGA------------------GGGGCATCTTGTTTCTTCTCAGGGAAAGCAGGGGGGTGTTTCTGGAGCTCTTTAGCAGTGTCAGGGCTGAGGCCTAG-GGTCA-GGCCCCTCACCTTTCTGTCCTTTCTCAGTGCTG-CTTCCCAGCCCAGCATGCTCATGGTGGGCATGGTTGCTGGCCTGGTTCTCCTTGGAACTCTGTTGACTGGAGCTGTGGT------TGTGATGTGGAGGAAGAAGAGCTCAGGTAGGGAAGGGGTGAGGGGCAGGGTCTACATTTTTTTGTCTCACTGGGGTTTC--AACCCCAGGTAGCATGGTGCCCTGTCCCATTACTGGGAAGTTCTATCCACACACACCTGCTTCCCCTGCCA-GGGCCCTGTGTGCCAACAGTTAATTGTCTTGTATAGCATATGTGACAGTGAAGGAAAG---TTTTA--ACGTGATGATTATGGTGATG--GGGACCTGATCCCCAGCAGTCACAGGT--CAGAGAGGAAGGAACTGTGCTCAGGACAGACCTCCAGGAGGGCAGTTGATCCA-----CACTCTTTCTTCTCCTGTGATTT
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e nomLeu3.chr1a            74690058 12010 + 122973662 I

a score=25531.000000
s hg38.chr6_GL000254v2_alt   988606 5 +   4827813 TTGAT
s panTro5.chr6             29951104 5 + 175400573 TTGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30184788 5 + 173848474 TTGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    5985146 5 +   6154872 TTGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29842291 5 - 170955103 CTAAT
i macFas5.chr4             C 0 N 0
s cerAty1.NW_012002711v1     639962 5 +    766320 CTGAT
i cerAty1.NW_012002711v1   C 0 I 14
s chlSab2.chr17            29095954 5 -  71996105 CTGAT
i chlSab2.chr17            C 0 I 14
s colAng1.NW_012115566v1    2748767 5 -   3067355 CTGAT
i colAng1.NW_012115566v1   C 0 I 14
s calJac3.chr4             30109511 5 + 171630274 CTGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378364            26351 5 +    187130 CTGAT
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     396573 5 -   1771730 CTGAT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         16739998 5 -  18854210 CTGAT
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018509740v1     393362 16316 -    457564 I
e macNem1.NW_012011356v1    2891538 19 -   2996164 I
e rheMac8.chr4             30179145 19 + 172585720 I
e nomLeu3.chr1a            74690058 12010 + 122973662 I

a score=24803.000000
s hg38.chr6_GL000254v2_alt       988611 9 +   4827813 CCTGCCCTG
s panTro5.chr6                 29951109 9 + 175400573 CCTGCCCTG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30184793 9 + 173848474 CCTGCCCTG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        5985151 9 +   6154872 CCTGCCCTG
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    44726 9 +    231697 CCTGACCTG
i macFas5.chr4_KE145577_random N 0 C 0
s calJac3.chr4                 30109516 9 + 171630274 TCTGCCCTG
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                26356 9 +    187130 CCTTCCCTG
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         396578 9 -   1771730 CCTTCCCTG
i cebCap1.NW_016107755v1       C 0 I 32404
s otoGar3.GL873550             16740003 9 -  18854210 CCTCCCCTG
i otoGar3.GL873550             C 0 C 0
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e colAng1.NW_012115566v1        2748772 14 -   3067355 I
e chlSab2.chr17                29095959 14 -  71996105 I
e cerAty1.NW_012002711v1         639967 14 +    766320 I
e macNem1.NW_012011356v1        2891538 19 -   2996164 I
e rheMac8.chr4                 30179145 19 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=1883.000000
s hg38.chr6_GL000254v2_alt       988620 1 +   4827813 G
s panTro5.chr6                 29951118 1 + 175400573 G
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30184802 1 + 173848474 G
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        5985160 1 +   6154872 G
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    44735 1 +    231697 G
i macFas5.chr4_KE145577_random C 0 C 0
s calJac3.chr4                 30109525 1 + 171630274 G
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                26365 1 +    187130 A
i saiBol1.JH378364             C 0 C 0
s otoGar3.GL873550             16740012 1 -  18854210 G
i otoGar3.GL873550             C 0 C 0
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e cebCap1.NW_016107755v1         396587 32404 -   1771730 I
e colAng1.NW_012115566v1        2748772 14 -   3067355 I
e chlSab2.chr17                29095959 14 -  71996105 I
e cerAty1.NW_012002711v1         639967 14 +    766320 I
e macNem1.NW_012011356v1        2891538 19 -   2996164 I
e rheMac8.chr4                 30179145 19 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=132754.000000
s hg38.chr6_GL000254v2_alt       988621 27 +   4827813 ATCTACAGTTACACTTTTCTGGAAACT
s panTro5.chr6                 29951119 27 + 175400573 ATCTACAGTTACACTTTTCTGGAAACT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30184803 27 + 173848474 ATCTACAGTTACACTTTTCTGGAAACT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        5985161 27 +   6154872 ATCTACAGTTACACTTTTCTGGAAACT
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30179164 27 + 172585720 ATCTGCAGTTACATATTTCTGGAAACT
i rheMac8.chr4                 I 19 C 0
s macFas5.chr4_KE145577_random    44736 25 +    231697 GTCTGCAGT--CACAGTTCTGGAAACT
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012011356v1        2891557 27 -   2996164 ATCTGCAGTTACATATTTCTGGAAACT
i macNem1.NW_012011356v1       I 19 C 0
s cerAty1.NW_012002711v1         639981 27 +    766320 ATCTGCAGTTACATATTTCTGGAAACT
i cerAty1.NW_012002711v1       I 14 C 0
s chlSab2.chr17                29095973 27 -  71996105 ATCTGCAGTTACACATTTCTGGAAACT
i chlSab2.chr17                I 14 C 0
s colAng1.NW_012115566v1        2748786 27 -   3067355 ATCTGCAGTTACACATTTCTGGAAACT
i colAng1.NW_012115566v1       I 14 C 0
s calJac3.chr4                 30109526 26 + 171630274 GTCTGTAGTCAC-TATGGCTAGAAACT
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                26366 27 +    187130 GTTTGCAGTCACAAATTTCTGGAAACT
i saiBol1.JH378364             C 0 C 0
s otoGar3.GL873550             16740013 25 -  18854210 GTCTTCAGT--CAGAGTTCTGGAAGCT
i otoGar3.GL873550             C 0 I 56338
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e cebCap1.NW_016107755v1         396587 32404 -   1771730 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=44220.000000
s hg38.chr6_GL000254v2_alt       988648 9 +   4827813 TCTCTGGGA
s panTro5.chr6                 29951146 9 + 175400573 TCTCTGGGA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30184830 9 + 173848474 TCTCTGGGA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        5985188 9 +   6154872 TCTCTGGGA
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30179191 9 + 172585720 TCTCTGGGA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    44761 9 +    231697 CCTCTGGGA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012011356v1        2891584 9 -   2996164 TCTCTGGGA
i macNem1.NW_012011356v1       C 0 C 0
s cerAty1.NW_012002711v1         640008 9 +    766320 TCTCTGGGA
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29096000 9 -  71996105 TCTCTGGGA
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2748813 9 -   3067355 TCTCTGGGG
i colAng1.NW_012115566v1       C 0 C 0
s calJac3.chr4                 30109552 9 + 171630274 TTTTTTGGA
i calJac3.chr4                 C 0 I 33332
s saiBol1.JH378364                26393 9 +    187130 TCTCAGAGG
i saiBol1.JH378364             C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e cebCap1.NW_016107755v1         396587 32404 -   1771730 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=10505.000000
s hg38.chr6_GL000254v2_alt       988657 2 +   4827813 TC
s panTro5.chr6                 29951155 2 + 175400573 TC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30184839 2 + 173848474 TC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        5985197 2 +   6154872 TC
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30179200 2 + 172585720 TC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    44770 2 +    231697 TC
i macFas5.chr4_KE145577_random C 0 I 8183
s macNem1.NW_012011356v1        2891593 2 -   2996164 TC
i macNem1.NW_012011356v1       C 0 C 0
s cerAty1.NW_012002711v1         640017 2 +    766320 TC
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29096009 2 -  71996105 TC
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2748822 2 -   3067355 TC
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364                26402 2 +    187130 TC
i saiBol1.JH378364             C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e cebCap1.NW_016107755v1         396587 32404 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=-864.000000
s hg38.chr6_GL000254v2_alt       988659 1 +   4827813 -A
s panTro5.chr6                 29951157 1 + 175400573 -A
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30184841 1 + 173848474 -A
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        5985199 1 +   6154872 -A
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30179202 1 + 172585720 -A
i rheMac8.chr4                 C 0 C 0
s macNem1.NW_012011356v1        2891595 1 -   2996164 -A
i macNem1.NW_012011356v1       C 0 N 0
s cerAty1.NW_012002711v1         640019 1 +    766320 -A
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29096011 1 -  71996105 -A
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2748824 1 -   3067355 -A
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364                26404 1 +    187130 C-
i saiBol1.JH378364             C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e cebCap1.NW_016107755v1         396587 32404 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macFas5.chr4_KE145577_random    44772 8183 +    231697 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=4095.000000
s hg38.chr6_GL000254v2_alt       988660 1 +   4827813 A
s panTro5.chr6                 29951158 1 + 175400573 A
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30184842 1 + 173848474 A
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        5985200 1 +   6154872 A
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30179203 1 + 172585720 A
i rheMac8.chr4                 C 0 I 7861
s macNem1.NW_012013156v1          31056 1 +    243043 A
i macNem1.NW_012013156v1       N 0 C 0
s cerAty1.NW_012002711v1         640020 1 +    766320 A
i cerAty1.NW_012002711v1       C 0 I 7265
s chlSab2.chr17                29096012 1 -  71996105 A
i chlSab2.chr17                C 0 I 39832
s colAng1.NW_012115566v1        2748825 1 -   3067355 A
i colAng1.NW_012115566v1       C 0 I 6933
s saiBol1.JH378364                26405 1 +    187130 A
i saiBol1.JH378364             C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e cebCap1.NW_016107755v1         396587 32404 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macFas5.chr4_KE145577_random    44772 8183 +    231697 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=5730.000000
s hg38.chr6_GL000254v2_alt       988661 4 +   4827813 AGAC
s panTro5.chr6                 29951159 4 + 175400573 AGAC
i panTro5.chr6                 C 0 I 15099
s panPan2.chr6                 30184843 4 + 173848474 AGAC
i panPan2.chr6                 C 0 I 15098
s gorGor5.CYUI01015250v1        5985201 4 +   6154872 AGAC
i gorGor5.CYUI01015250v1       C 0 I 15325
s macNem1.NW_012013156v1          31057 4 +    243043 AGAC
i macNem1.NW_012013156v1       C 0 T 30278
s saiBol1.JH378364                26406 4 +    187130 AGAC
i saiBol1.JH378364             C 0 N 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e cebCap1.NW_016107755v1         396587 32404 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2748826 6933 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         640021 7265 +    766320 I
e macFas5.chr4_KE145577_random    44772 8183 +    231697 I
e rheMac8.chr4                 30179204 7861 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=0.000000
s hg38.chr6_GL000254v2_alt       988665 15046 +   4827813 [encoded data, 15046 characters]
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e cebCap1.NW_016107755v1         396587 32404 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2748826  6933 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         640021  7265 +    766320 I
e macNem1.NW_012013156v1          31061 30278 +    243043 T
e macFas5.chr4_KE145577_random    44772  8183 +    231697 I
e rheMac8.chr4                 30179204  7861 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I
e gorGor5.CYUI01015250v1        5985205 15325 +   6154872 I
e panPan2.chr6                 30184847 15098 + 173848474 I
e panTro5.chr6                 29951163 15099 + 175400573 I

a score=62605.000000
s hg38.chr6_GL000254v2_alt      1003711 85 +   4827813 TCTTCTTAATCAGGAAAGTCCAAAGCACTCCCTGTCCTCTCCCTCATATCAGACTTCAGCTCTGCATCTGCAAGATGCAGAGGTC
s panTro5.chr6                 29966262 85 + 175400573 TCTTCTTAATCAGGAAAGTCCAAAGCACTCCCTGTCCTCTCCCTCATATCAGACTTCAGCTCTGCATCTGCAAGATGCAGAGGTC
i panTro5.chr6                 I 15099 C 0
s panPan2.chr6                 30199945 85 + 173848474 TCTTCTTAATCAGGAAAGTCCAAAGCACTCCCTGTCCTCTCCCTCATATCAGACTTCAGCTCTGCATCTGCAAGATGCAGAGGTC
i panPan2.chr6                 I 15098 C 0
s gorGor5.CYUI01015250v1        6000530 85 +   6154872 TCTTCTTAATCAGGAAAGTTCAAAGCACTCTCTGTCCTCTCCCTCATATCAGACTTCAGCTCTGCATCTGCAAGATGCAGAGGCC
i gorGor5.CYUI01015250v1       I 15325 C 0
s saiBol1.JH378364               151622 83 +    187130 TCTTCATAATCAGAAAACCCCAGAGCACTTTTTATCCCCTCCGGAATATCACACTTCAGCTCTGCATC-GTCACATG-AGGGCTC
i saiBol1.JH378364             N 0 I 3
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e cebCap1.NW_016107755v1         396587 32404 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2748826 6933 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         640021 7265 +    766320 I
e macNem1.NW_012013156v1          31061 30278 +    243043 T
e macFas5.chr4_KE145577_random    44772 8183 +    231697 I
e rheMac8.chr4                 30179204 7861 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=125018.000000
s hg38.chr6_GL000254v2_alt      1003796 87 +   4827813 CTCTGCAAGGCAGGTGTCTTCCCACAGGGTCAGCCCCTAAACACTGGCTGCAGATGTCCCCCTCCATCCCTTCCCAGCCCTTTCTGT
s panTro5.chr6                 29966347 87 + 175400573 CTCTGCAAGGCAGGTGTCTTCCCACAGGGTCAGCCCCTAAACACTGGCTGCAGATGTCCCCCTCCATCCCTTCCCAGCCCTTTCTGT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30200030 85 + 173848474 CTCTGCAAGGCAGGTGTCCTCCCACAGGGTCAGCCCCTGAACACTGGCTGCAGATGTCCCC--CCATCCCTTCCCAGCCCTTTCTGT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6000615 87 +   6154872 CTCTGCAAGGCAAGTGTCCTCCCACAGGGTCAGCCCCTAAACACTGGCTGCAGATGTCCCCCTCCATCCCTTCCCAGCCCTTTCGGT
i gorGor5.CYUI01015250v1       C 0 C 0
s macNem1.NW_012013156v1            783 84 +    243043 CTCTGCAGGGCAGATGTTCCCCCACAGGGTCAGCCCCTGAACATTGGCCCCAGATGTCCC---CCATCCCTTCTCAGCCTTTTCGGT
i macNem1.NW_012013156v1       T 30278 I 57807
s saiBol1.JH378364               151708 82 +    187130 CTCTGCAGGGCAGGTGTCC-CCCACA-GGTCAGCCC-TGAACATTTACAGCAGATGTCCCC--CCATCCCTTCCCAGGTCTGTTGGT
i saiBol1.JH378364             I 3 C 0
s cebCap1.NW_016107755v1         428991 84 -   1771730 CTCTGCAGGGCAGGTGTCG-CCCACAGGGTCAGCCCATGAACATTTGCCGCAGATGTCCCC--CCATCCCTTCCCAGGCTTCTGGGT
i cebCap1.NW_016107755v1       I 32404 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2748826 6933 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         640021 7265 +    766320 I
e macFas5.chr4_KE145577_random    44772 8183 +    231697 I
e rheMac8.chr4                 30179204 7861 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=504663.000000
s hg38.chr6_GL000254v2_alt      1003883 331 +   4827813 GTTGCTGTGAATC-GTCCATCACCGAGAACTGGTGGGGAGATGCGGGGGAGGTGGGGAGATTTCTTTGTGCTGTGTCAAGGCATCAAGACAGACCTCTCCTTCTCTCTTGAACCTCATACTCTATCCCTTCCCAGACACTTGAAATAAAACACAGACCAGAAATGTCTACTTAAAGGGTAAATTTCTATAGTATAAAATTATGAAGACATAGTAGATATGAGGTAATGCATGAGAGTGTGACA-GGGTGAGGGGACCTCAAGGTGCCAGGAAAGCTGGTCCTGGGCTCCCCAGAAGGAGCTGTAACCAGGACACTCACTCATAAATCTCATTT
s panTro5.chr6                 29966434 332 + 175400573 GTTGCTGTGAATCTGTCCATCACCGAGAACTGGTGGGGAGATGTGGGGGAGGTGGGGAGATTTCTTTGTGCTGTGTCAAGGCATCAAGACAGACCTCTCCTTCTCTCTTGAACCTCATACTCTATCCCTTCCCAGACACTTGAAATAAAACACAGACCAGAAATGTCTACTTAAAGGGTAAATTTCTATAGTATAAAATTATGAAGACATAGTAGATATGAGGTAATGCATGAGAGTGTGACA-GGGTGAGGGGACCTCAAGGTGCCAGGAAAGCTGGTCCTGGGCTCCCCAGAAGGAGCCGTAACCAGGACACTCACTCATAAATCTCATTT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30200115 332 + 173848474 GTTGCTGTGAATCTGTCCGTCACTGAGAACTGACGGGGAGATGTGGGGGAGGAGGGGAGATTTCTTGGTGCTGTGTCAAGGCATCAAGACAGATCTCTCCTTCTCTCTTGAACCTCACACTCTATCCCTTCCCAGACACTTGAAATAAAACACAGACCAGAAATGTCTACTTAAAGGGTAAATTTCTATAGTATAAAATTATGAAGACATAGTAGATATGAGGTAATGCATGAGAGTGTGACA-GGGTGAGGGGACCTCAAGGTGCCAGGAAAGCTGGTCCTGGGCTCCCCAGAAGGAGCCGTAACCAGGACACTCACTCATAAATCTCATTT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6000702 316 +   6154872 GTTGCTGTGAATCTATCCATCACCGAGAACTGGTGGGGAGATGTGGGGGAGGTGGGGAGATTTCTTTGTGCTGTGTCAAGGCATCAAGACAGACCTCTCCTTCTCTCTTGAACCTCACACTCTATCCCTTCCCAGACACTTGAAATAAAACACAGACCAGAAATGTCTACTTAAAGGGCAAATTTCTATAGTATAAAATTATGAAGACAGAGTAGATATGGGGTAATGCATGACAGTGTGACA-GGGTGAGG----------------GGAAAGCTGGTCCCAGTCTCCTCAGAAAGAGCCGTAACCAGGACACTCACTCATAAAGCTCATTT
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    52955 323 +    231697 GTTGCTGTGAATCTGTCCCTCACTGAGAACTGACAGAGCGATGTGGGCGAGG-GGGGTGATTTCTCTGTGCTGTGTCAAGGCATCAAGACAGACCTCTCCTTCTCTCCTGAACCTCACACTCTATCCCTTCCCAGACACTTGAATTAAAACACAGACCAGAAATGTCTGTTTAAGAACTAAATATCAATAGCATAAAA-TATGAAGACAGAGTAGA-ATGGGG-------TGAGAGTGTAACAGGGGTGATAGGACCTCAAGGTGCCAGGGAAGCTGGTCCTGGGCTCCCCAGGAAGAGCCATCACCAGGACACTCACTCATAAAGGTCACCT
i macFas5.chr4_KE145577_random I 8183 C 0
s saiBol1.JH378364               151790 329 +    187130 GTTACTGTGAATCTGTCCCTCATTGAGAACTGGTGGGAAAATGTCAGAGGGGAGGGGAGATTTCTTTGTGCTGTGTCAAGGCATCAAGACAGACCTCTCCTTCTCCCCCAAAATTCA-ACTCTGTTTCTTCTGAGACTCTTGAAATAAAACACAGACCAGAAATGTCTATTTAAAAGCTAAATATTTATAGCATAAAA-TATGAAGACAGAGTAGA-ATGCGGTCATGCATGAGAGTGTGACA-GGGCGAGGGGACCTCAAGGTGCCAGGAAGGTTGGTCCTGGACTCCTCTGGAGGAGCCGTCACCAGGACACTCACTCATAAAGCCCACCT
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         429075 329 -   1771730 ATTACTGTGAAGCTCTCCCTCACTGACAACTGGCGGGGAGATGTCAGGGAGGAGAGCAGATTTCTTTGTGCTGTGTCAAGGCATCAAGACAGACCTCTCCTTCATCCCTGAACCTCA-ACTCTGTTCCTTCCCAGACACTTGAAATAAAACTCAGACCAGAAATGTCTATTTAAAAGCTAAATATCTATAGAATAAAA-TATAAAGACAGAGTAGA-ACGGGATAATGTATGAGAGTGTGACA-GGGCAATGGGACCTCAAGGTGCCAGGAAAGTTGGTCCTGGACTCCTCTGTAGGAGCCGTCACCAGGACACTCACTCATAAATCTCACCT
i cebCap1.NW_016107755v1       C 0 I 62
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2748826 6933 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         640021 7265 +    766320 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e rheMac8.chr4                 30179204 7861 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=50773.000000
s hg38.chr6_GL000254v2_alt      1004214 57 +   4827813 ataataataatacaatgaccgcatatgtaatatattaaaatataatcaaatg--------ataac--------
s panTro5.chr6                 29966766 57 + 175400573 ataataataatacaatgaccgcatatgtaatatattaaaatataatcaaatg--------ataac--------
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30200447 57 + 173848474 ATAATAATAATACAATGACCGCACATGTAATATATTAAAATATATTCAAATG--------ATAAC--------
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6001018 65 +   6154872 ataataataatacaattactgcacatgtaatatattaaaatataataaaatgataacaaaataac--------
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    53278 51 +    231697 ---ATAATAATGCAATTACAGCATATGTAATATATCAAAATATAATAAA-----------ATAAC--------
i macFas5.chr4_KE145577_random C 0 C 0
s saiBol1.JH378364               152119 62 +    187130 ---GTGATGGTACAATTACTGCACATGTCATGTGTTAAAATATGATAAAATC--------ATAACAAAATAAT
i saiBol1.JH378364             C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e cebCap1.NW_016107755v1         429404 62 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2748826 6933 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         640021 7265 +    766320 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e rheMac8.chr4                 30179204 7861 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=144124.000000
s hg38.chr6_GL000254v2_alt      1004271 85 +   4827813 aaaaataatGTggcacagctgcaaacccctcatatatactaacgcttttcatccacccaaccacaagaaataaatgctgttagtt
s panTro5.chr6                 29966823 85 + 175400573 aaaaataatGTggcacagctgcaaacacctcatatatactaacgcttttcatccacccaaccacaagaaataaatgctgttagtt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30200504 85 + 173848474 AAAAATAATGTggcacagctgcaaacacctcatatatactaacactttccatccacccaaccacaagaaataaatgctgttagtt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6001083 85 +   6154872 aaaaataatGTggcacagctgcaaacacctcatatatactaacactttccatccacccaaccacaagaaataaatgctgttagtt
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    53329 85 +    231697 AAAAATAATATggcacagctgcaaacacttcatatatactaacccttttcattcatccaaccacaataaataaatgctgttagtt
i macFas5.chr4_KE145577_random C 0 C 0
s saiBol1.JH378364               152181 84 +    187130 AAAAATAACGTggcacagctgcaagcacctcatatatattaaccctttccatccactctaccacaagaaataaacgctgttact-
i saiBol1.JH378364             C 0 N 0
s cebCap1.NW_016107755v1         429466 85 -   1771730 AAAAATAACATggcacagctgcaagcacctcatagatactaaccctttctatccacccaaccacaagaaataaatgctgttactt
i cebCap1.NW_016107755v1       I 62 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2748826 6933 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         640021 7265 +    766320 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e rheMac8.chr4                 30179204 7861 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=293830.000000
s hg38.chr6_GL000254v2_alt      1004356 208 +   4827813 tccccatttcatagatgaggaaactgaggcaccaagtgggaaagtgctggtgagacctgggcagggagttgaattctggccatctggctgcagagtGTAGCTGCCCTCAGTGGAGCCAGTAGACCCAGGAGTTGACACCAGAGACTGAAATCCCAGCTGTGCACTGCCCTGGTGGTCTCCTGTCCCAACCGGGCGTTGAT-CCGGGCCT
s panTro5.chr6                 29966908 208 + 175400573 tccccatttcatagatgaggaaactgaggcaccaagtgggaaagtgctggtgagacctgggcagggagttgaattctggccatctggctgcagagtGTAGCTACCCTCAGTGGAGCCAGTAGACCCAGGAGTTGACACCAGAGACTGAAATCCCAGCTGTGCACTGCCCTGGTGGTCTCCTGTCCCAACCGGGCGTTGAT-CCGGGCCT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30200589 208 + 173848474 tccccatttcatagatgaggaaactgaggcaccaagtgggaaagtgctggtgagacctgggcagggagttgaattctggccatctggctgcagagtGTAGCTACCCTCAGTGGAGCCAGTAGACCCAGGAGTTGACACCAGAGACTGAAATCCCAGCTGTGCACTGCCCTGGTGGTCTCCTGTCCCAACCGGGCGTTGAT-CTGGGCCT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6001168 208 +   6154872 tccacatttcatagatgaggaacctgaggcaccaagtgggaaagtgctggtgagacctgggcagggagttgaattctggccatctggctgcagagtGTAGCTGCCCTCAGTGGAGCCAGTAGACCCAGGAGTTGACACCAGAGGCTGAAATCCCAGCTGTGCACTGCCCTGGTGGTCTCCTGTCCCAACCAGGTGTTGAT-CCAGGCCT
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    53414 208 +    231697 tccctatttcatagatgaggaaactaaggcaccaagagggaaaatgctggtgagacccaggtagggagttgaatccaggccgcctggctgcagagtctagctgccctcaGTGGCACCAGTGGAACCAGGAGATGACACGAGAGACTGAAATCCCAGTTGTGCACTGCCCTGGTGGTCTCCTGTCCCAACTAGGTGTTGAT-CCAGGCCT
i macFas5.chr4_KE145577_random C 0 C 0
s saiBol1.JH378364                31655 195 +    187130 tctccgtttaacagatgaagaaactgaggcaccgggagggaaagtgtcagtaggaccagagctgcaggttgaatccaggccagctggctgcagggt-cATGGCTCCCTGGTTAAATCAG-GGACCCAGGAGCCCACCGCAAA-----CAATCCCAGTTGCGCCGATCGTCTGTGGGCGCCC-------CCTGGTGTTGGTACTGGGCCT
i saiBol1.JH378364             N 0 N 0
s cebCap1.NW_016107755v1         429551 206 -   1771730 -tcctatttcatagatgaggaaactgaggcactaagagggaaagtgctggtgagacctgggcagggggttcaatccaggccgcccggctgcagagtGTAGGAACCCTCAGTGGAGCCAGTGGACCCAGGAGCTGACAGCAGAGGCTGAAATCCCAGCCGTGCGGTGCCCTGGTGCTCTCCTGT-CCAGTCAGGTGTTGAT-CTGGGCCT
i cebCap1.NW_016107755v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2748826 6933 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         640021 7265 +    766320 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e rheMac8.chr4                 30179204 7861 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=73610.000000
s hg38.chr6_GL000254v2_alt      1004564 70 +   4827813 TGCAGGCTCACGTGCTCTGGAGAAAATAGAGAAACCAATAAATGCTCCCCTGGGTGCAGAGTGCTGCTTT
s panTro5.chr6                 29967116 70 + 175400573 TGCAAGCTCACGTGCTCTGGAGAAAATAGAGAAACCAATAAATGCTCCCCTGGGTGCAGAGTGCTGCTTT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30200797 70 + 173848474 TGCAGGCTCACGTGCTCTGGAGAAAATAGAGAAACCAATAAATGCTCCCCTGGGTGCAGAGTGCTGCTTT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6001376 70 +   6154872 TGCAGGCTCACGTGCTCTGGAGAAAAGGGAGAAACCAATAAATGCTCCCCTGGGTGCAGAGTGCTGCTTT
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    53622 69 +    231697 TGTAGGTTCCCATGCTCTGGAGAAAAGAGAAAAA-CAGTAAATGTTCCACTGGGTGCAGGGTGTTGCTTT
i macFas5.chr4_KE145577_random C 0 C 0
s saiBol1.JH378364               152472 53 +    187130 CGTAGGCTCACACACTC-----------GAGAAAAGAGTTACTGCTCCACTGGGTGCAGA-TGTT-----
i saiBol1.JH378364             N 0 N 0
s cebCap1.NW_016107755v1         429757 53 -   1771730 TGTAGTCTCACACACTC-----------GGGAAAAGAGTTAGTGCTCCACTGGGTGCAGA-TGTT-----
i cebCap1.NW_016107755v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2748826 6933 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         640021 7265 +    766320 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e rheMac8.chr4                 30179204 7861 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=257093.000000
s hg38.chr6_GL000254v2_alt      1004634 213 +   4827813 TTACTCCCTGAGGATTTCTCCCTCCTCAG---TCACTCCAAAATCAGATTTACCCTTTCTCTGAGGG---AAGATGATGCTCCCACATTTTTCTCCCTCCTATGGCACTTTTCCCAGCCCCTGCCAGTCCCCTCCCATGACTTCATGAAGATCAGCACTTGCCCTGTGCCCACTATGCACTCTGTAGGGACTGAAAGGGCCGCAGGACTAAATGACAAG
s panTro5.chr6                 29967186 213 + 175400573 TTACTCCCTGAGGATTTCTCCCTCCTCAG---TCACTCCAAAATCAGATTCACCCTTTCTCTGAGGG---AAGATGATGCTCCCACATTTTTCTCCCTCCTATGGCACTTTTCCCAGCCCCTGCCAGTCCCCTCCCATGACTTCATGAAGATCAGCACTTGCCCTGTGCCCACTATGCACTCTGTAGGGTCTGAAAGGGCCGCAGGACTAAATGACAAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30200867 213 + 173848474 TTACTCCCTGAGGATTTCTCCCTCCTCAG---TCACTCCAAAATCAGATTCACCCTTTCTCTGAGGG---AAGATGATGCTCCCACATTTTTCTCCCTCCTATGGCACTTTTCCCAGCCCCTGCCAGTCCCCTCCCATGACTTCATGAAGATCAGCACTTGCCCTGTGCCCACTATGCACTCTGTAGGGACTGAAAGGGCCTCAGGACTAAATGACAAG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6001446 213 +   6154872 TTACTCCCTGAGGAGTTCTCCCTCCTCAG---TCACTCCCAAATCAGATTCACCCTTTCTCTGAGGG---AAGGTGATGCTCCCACATTTTTCTCCCTCCTATGGCACTTTTCCCAGCCCCTGCCAGTCCCCTCCCGTGACTTCATCAACATCAGCACTTGCCCTGTGCCCACTATGCACTCTGTGGGGAGTGAAAGGGCCCCAGGACTAAATGACAAG
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    53691 213 +    231697 TTATTCCCTGAGGGCTTCTCCCTCCTCAG---TCACTCCAAAATTAGATTCACTCTTTCTCTGAGTG---AAGATGACGTCCCCACTTTTTTCTCCCTCCCATGGCACTTTTCCCAGCCCCTGCCAGTCCCCTCCCATGACTCCATCAGCATCAGCACCTGCCCTGTGCTCAGCACCCATCGCGCAGGGAGCGAAAGGACCCCAGGACTAAGGAACAAG
i macFas5.chr4_KE145577_random C 0 C 0
s saiBol1.JH378364                31870 196 +    187130 TTACTC--------CTTCAGCCTCTCCAGATTTCAAGCCAAGACTAAA---------GCTCCGAGAAAATAAGGT-TCACCT-TAATTACCTCTCCACCCCTG----TTTTTCCCAGTCCCAGGCAGTTTCCTCCCTCGACTCCATCAACATCGTCACCTGCCTGACGCACAGCACCTACCATGTGAGGAGTGAAAAGGTCCCAGGACTAAAGGACAAG
i saiBol1.JH378364             N 0 N 0
s cebCap1.NW_016107755v1         429810 204 -   1771730 TTATTCCCTGAGGACTTCTGCCTTCTCAG---TCACTCCGAAATCAGATTCACCGTTTCTCTGAGGG---AAGAT-ATGTCTGTGCTTCTTTCTCCCACCCAGGGCACTTTTCCCAGCCCCTGCCAGTCCCCTCCCATGACTCCATCAACATCTGCCCCCACCCTGTGCCCACCACCCACCATGCAAGGTGGAAAAAG--CCCTTTGCAGAAG------
i cebCap1.NW_016107755v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2748826 6933 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         640021 7265 +    766320 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e rheMac8.chr4                 30179204 7861 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=307382.000000
s hg38.chr6_GL000254v2_alt      1004847 211 +   4827813 ACTCCAGAAGAAACTCAGTGCCCTCCCCTCCTCTCAAGCCTGGCCAGCTCGGACACAGTGGGAGGCCTCCCCAGAGAGA------GGCCCTGG------CTCCACGTACTTCCAGGCCTGGGCTGGGTCACACACAAGGCCTTTCTCTCC-CTCTTTCCCCAGGCCCTCCTTTCCTGCAGAAGCACCTGCACACCAGGGCAGGCCCTGCCCACTGTGGGTTCCG
s panTro5.chr6                 29967399 211 + 175400573 ACTCCAGAAGAAACTCAGTGCCCTCCCCTCCTCTCAAGCCTGGCCAGCTCTGACACAGTGGGAGGCCTCCCCAGAGAGA------GGCCCTGG------CTCCACGTACTTCCAGGCCTGGGCTGGGTCACACACAAGGCCTTTCTCTCC-CTCTTTCCCCAGGCCCTCCTTTCCTGCAGAAGCACCTGCACACCAGGGCAGGCCCTGCCCACTGTGGGTTCCG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30201080 211 + 173848474 ACTCCAGAAGAAACTCAGTGCCCTCCCCTCCTCTCAAGCCTGGCCAGCTCTGACACAGTGGGAGGCCTCCCCAGAGAGA------GGCCCTGG------CTCCACGTACTTCCAGGCCTGGGCTGGGTCACACACAAGGCCTTTCTCTCC-CTCTTTCCCCAGGCCCTCCTTTCCTGCAGAAGCACCTGCACACCAGGGCAGGCCCTGCCCACTGTGGGTTCCG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6001659 211 +   6154872 ACTCCAGAGGAAACTCAGTGCCCTCCCCTCCTCTCAAGCCTGGCCAGCTCTGACACAGTGGGAGGCCTCCCCAGAGAGA------GGCCCTGG------CTCCATGTACTTCCAGGCCTGGGCTGGGTCACACACAAGGCCTTTCTTTCT-CTCTTTTCCCAGGCCCTCCTTTCCTGCAGAAGCACCTGCACACCAGGGCAGGCCCTGCCCACTGTGGGTTCCG
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    53904 218 +    231697 ACCCAGGAGGAAACTCAGTGCCCTCCCCTCCTCTCACGCTTGACCAGCCCTGACACAGTGGGAGGCCTCCCCAAAGAGA------GGCCCTGGCCCTATCTCCATGTCCCTCCAGACCTGGGCTGGGTCACACACACAGTCCTTCTCCCCACTCAGTCCTCAGTCCCTCCTCATCTGCGGAGGCACCTGCACACCAGGACAGACCCTGCACATTGTGGGTTCTG
i macFas5.chr4_KE145577_random C 0 C 0
s saiBol1.JH378364               152737 213 +    187130 ACCTGGGAGAAAACCCAGTGCCCTCCCCTCCTCTCAAGCCTGGCCAGCTCTG--GTAGCAGGAGGACTCCCCAAAGACAGTTCCTGGCCCTGG------CTCTATGTTCTCCCAGGCCTGGGCTGGGTGACACACACAGTCCTTCTCCCT-CTCAGTCCCCAGTCTCACGTCACCTGCAGAGGCCCCTGCACACCAGG-CTGGCCCTGCACACTGT-GGCTCTG
i saiBol1.JH378364             N 0 C 0
s cebCap1.NW_016107755v1         430014 212 -   1771730 ACCTGGGAGAAAACCCGGTGCCCTCCCCTCCTCTAAAGCCTGGCCAGCTCCG--ATAGCAGGAGGACTCCCCAAAGACAGTTCCTGACCCTGG------CTCCATGTCCTTCCAGGCCAGGGCTGCGTGACACACACAGTCCTTCTCCC--CTCAGTTCCCAGTCCCACCTCACCGGCAGAGGCACCTGCACATGAGG-TAGACCCTGTACACTGC-GGCTCTG
i cebCap1.NW_016107755v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2748826 6933 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         640021 7265 +    766320 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e rheMac8.chr4                 30179204 7861 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=787980.000000
s hg38.chr6_GL000254v2_alt      1005058 272 +   4827813 CCCTCCACCTACAGCTCAGTGTTCCTCCCCTTCCAGTCCTGAGCAGGCAGCTCCTACCTGGAGAGCCCACCAGGAAGCCCAGCAGGCCTGTCAGGCCCAGGATGGAAACACGTGGCTGCCATGGGGTCTGCACCTGACCTGACCCTGGAGACCCCCTTGCTCAAGAAGGCTCTGCTTCCCTTGA-----------CACCCAGGTCCATGACCTGCACTTGGGATGCCCTG-CTCCTGCCTGGTCCACTCATCCCTGGAAATCCAGCTCCACCCCAGGGCTGCTG
s panTro5.chr6                 29967610 272 + 175400573 CCCTCCACCTACAGCTCAGTGTTCCTCCCCTTCCAGTCCTGAGCAGGCAGCTCCTACCTGGAGAGCCCACCAGGAAGCCCAGCAGGCCTGTCAGGCCCAGGATGGAAACACGTGGCTGCCATGGGGTCTGCATCTGACCTGACCCTGGAGACCCCCTTGCTCAAGAAGGCTCTGCTTCCCTTGA-----------CACCCAGGTCCATGACCTGCACTTGGGATGCCCTG-CTCCTGCCTGGTCCACTCATCCCTGGAAATCCAGCTCCACCCCAGGGCTGCTG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30201291 272 + 173848474 CCCTCCACCTACAGCTCAGTGTTCCTCCCCTTCCAGTCCTGAGCAGGCAGCTCCTACCTGGAGAGCCCACCAGGAAGCCCAGCAGGCCTGTCAGGCCCAGGATGGAAACACGTGGCTGCCACGGGGTCTGCACCTGACCTGACCCTGGAGACCCCCTTGCTCAAGAAGGCTCTGCTTCCCTTGA-----------CACCCAGGTCCATGACCTGCACTTGGGACGCCCTG-CTCCTGCCTGGTCCACTCATCCCTGGAAATCCAGCTCCACCCCAGGGCTGCTG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6001870 272 +   6154872 CCCTCCACCTACAGCTCAATGTTCCTCCCCTTCCAGTCCTGAGCAGGCAGCTCCTACCTGGAGAGCCCACCAGGAAGCCCAGCAGGCCTGTCAGGCCCAGTATGGTAACATGTGGCTGCCACGGGGTCTGCACCTGACCTGACCCTGGAGACCCCCTTGCTCAAGAAGGCTCTACCTCCCTTGA-----------CGCTCAGGTCCATGACCTGCACTTGGGACGCCCTG-CTCCTGCCTGGTCCACTCATCCCTGGAAATCCAGCTCCACCCCAGGGCTGCTG
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30187065 280 + 172585720 CCCTCCACCTGCAGCTCAGCGTTCTTCCCCTCCCAGCCCTGAGCAGGCAGCTCCTAACTGGAGAGCCCATCAGGAAGCCCTG--GGGCTCGCAGGCCCAGCATCAAAACAAGTGGCTGCCACAG-GTCTACACCTGACCTGACCCTAGAGAGCCCCATGCTGGAGGAGGCCTAGTGTCCCCTGACCCTCTGAACTCACCCAGGCCCATGACCTGCACTTGGGCCACCCTT-CTCCTGCCTGGTCCATTAACCCCTGGAAACTCAGCTCCACCCCAGGGCCACTG
i rheMac8.chr4                 I 7861 C 0
s macFas5.chr4_KE145577_random    54122 261 +    231697 CACTCCAGAGGTGGCTCACTGTTCCTCCCCTCCCAGCTCTAAGCAGACAACTCCTAACTGGAGATCCCATCAGGAAGCCCTG--GGGCTCACAGGTCCAGCGTGGAAATATGTGGCTGCCATGGAGTCTGCACTTGACGTGATGCTGCTGATTCCCTTGCTCAAGGAGGCCCAGTCTCCCCT--------------------CCCCATAACCTGCATGTGGGCTATGCTTGCTCCTGACT-GTCCACTCACCCCTGGAAATGCAGCTCCACCCCAGGGCTGCCG
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         647286 280 +    766320 CCCTCCACCTGCAGCTCAGCGTTCTTCCCCTCCCAGCCCTGAGCAGGCAGCTCCTAACTGGAGAGCCCATCAGGAAGCCCTG--GGGCTCGCAGGCCCAGCATCAAAACAAGTGGCTGCCACAG-GTCTACACCTGACCTGACCCTAGAGAGCCCCATGCTGGAGGAGGCCTAGTGTCCCTTGACCCTCTGAACTCACCCAGGCCCATGACCTGCACTTGGGCCACCCTT-CTCCTGCCTGGTCCATTAACCCCTGGAAACTCAGCTCCACCCCAGGGCCGCTG
i cerAty1.NW_012002711v1       I 7265 C 0
s colAng1.NW_012115566v1        2755759 280 -   3067355 CCCTCCACCTGCAGCTCAGTGTTCTTCCCCTCCCAGCCCTGAGCAGGCAGCTCCTAACTGGAGAGCCCATCAGGAAGCCCTG--GGGCTCGCAGGCCCAGCATCAAAACATGTGGCTGCCATGG-GTGTGCACCTGACCTGACCCTAGGGAGCCCCATGCTGGAGGAGGCCTGGTGTCCCCTGACCCTCTGAACTCACCCAGGCCCATGACCTGCACTTGGGCCACCTTG-CTCCTGCCTGGTCCATTAACCCCTGGAAACTCAGCTCCACCCCAGGGCCGCTG
i colAng1.NW_012115566v1       I 6933 I 15
s saiBol1.JH378364               152950 260 +    187130 CCCT---CCTGCAGCTCAGCGCTCCTCTCCTCCCAGCCCTGAGCAGGCAGCTCCTAACTGGGCAGCCCATTAAGAAGCCCATC-GCCACAGCTGGCTCAGCGTGGAAACA---------CGTGGAGTCTGCAGCTGACCTGACCCTGGGGACCCCCTTGCTCAAGGAGGCCCAGCCTAGCCTGA-----------CCCCCAGGCCTATGACCTGCACTTGGGCCATGCTTGCTCCAGCCTGGTCCACTTGCTTCGGGAAGCACAGCTCCACCCCAGGGCTGCTG
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         430226 272 -   1771730 CCCTCCACCTGCAGCTCAGCGCTCCTCCCCTCCCAGACCTGAGCAGGCAGCTCCTAACTGGGCAGCCCATTAAGAAGCCCACT-GGCACAGCTGGCCAAGCATGGAAATATGTTCCTGCCATGGAGTCTGCAGCTCACCTGACCCTGGGGACCCCCTTGTTCAAGGAGGCCCGGCCTAGCCTAA-----------CCCCCAGGCCCATGACCTACACTTGGGCCATCCTTGCTCCAGCCTGGTCCACTCACTTCAGGAAGCACAGCTCCACCGGAGGGCTGCCA
i cebCap1.NW_016107755v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=65600.000000
s hg38.chr6_GL000254v2_alt      1005330 30 +   4827813 CTTGGTGAGGCTGCAAGGCCTTCCTGTCTG
s panTro5.chr6                 29967882 30 + 175400573 CTTGGTGAGGCTGCAAGGCCTTCCTGTCTG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30201563 30 + 173848474 CTTGGTGAGGCTGCAAGGCCTTCCTGTCTG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6002142 30 +   6154872 CTTGGTGAGGCTGCAAGGCCTTCCTGTCTC
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30187345 30 + 172585720 GGTGGTGAGACCACAAGGCCTTCCTACCCT
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    54383 30 +    231697 CTTGGTGGGGCTGCAGGACCTTCCTGCCAC
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         647566 30 +    766320 TGTGGTGAGACCGCAAGGCCTTCGTACCCC
i cerAty1.NW_012002711v1       C 0 C 0
s saiBol1.JH378364               153210 30 +    187130 CTTGGTGAAGCCAAAAGACCTTCCTCTTCC
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         430498 30 -   1771730 CTTGGTGAGGCCGAAAGACCTTCCTCTTCC
i cebCap1.NW_016107755v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2756039 15 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=118112.000000
s hg38.chr6_GL000254v2_alt      1005360 35 +   4827813 -------------GTTCCTAGCAGGGATTCCACCCAGGCCACTGCCCT
s panTro5.chr6                 29967912 35 + 175400573 -------------GTTCCTAGCAGGGATTCCACCCAGGCCACTGCCCT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30201593 35 + 173848474 -------------GTTCCTAGCAGGGATTCCACCCAGGCCACTGCCCT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6002172 35 +   6154872 -------------GTTCCTAGCAGGGATTCCACCCAGGCCGCTGCCCT
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30187375 35 + 172585720 -------------GTTTCTAGCAGGGATTCCACCCAGGCCACTGCCCT
i rheMac8.chr4                 C 0 I 327
s macFas5.chr4_KE145577_random    54413 35 +    231697 -------------GTTCCTCGCAGGGATTCCACCCAGGCCACTGCCAG
i macFas5.chr4_KE145577_random C 0 I 1
s cerAty1.NW_012002711v1         647596 35 +    766320 -------------ATTCCTAGCAGGGATCCCACCCAGGCCACTGCCCT
i cerAty1.NW_012002711v1       C 0 I 1
s colAng1.NW_012115566v1        2756054 35 -   3067355 -------------GTTTCTAGCAGGGATTCCACCCAGGTCACTACCCT
i colAng1.NW_012115566v1       I 15 I 16
s saiBol1.JH378364               153240 48 +    187130 GTTCCTAGCAGCGATTCCTAGCAGAGATTCCACCCAAGCCACTGACCT
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         430528 48 -   1771730 GTTCCTAGCAGAGATTCCTACCAGGTATTCCACCCAAGCTGCTGATCT
i cebCap1.NW_016107755v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=19952.000000
s hg38.chr6_GL000254v2_alt      1005395 18 +   4827813 -CACACCCACAGAGGATCT
s panTro5.chr6                 29967947 18 + 175400573 -CACACCCACAGGGGATCT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30201628 18 + 173848474 -CACACCCACAGGGGATCT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6002207 18 +   6154872 -CACACCCACAGGGGATCT
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    54449 18 +    231697 -GAAGCCCACAGGGGATCT
i macFas5.chr4_KE145577_random I 1 C 0
s cerAty1.NW_012002711v1         647632 15 +    766320 -GCAGCCGACAGTGGA---
i cerAty1.NW_012002711v1       I 1 C 0
s saiBol1.JH378364               153288 19 +    187130 CACAGCCCATAGAGGAGCC
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         430576 19 -   1771730 CACAGCCCATAGGGGTCCC
i cebCap1.NW_016107755v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2756089 16 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e rheMac8.chr4                 30187410 327 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=173523.000000
s hg38.chr6_GL000254v2_alt      1005413 53 +   4827813 TCTTCTTCTCCCTATGGAATAAGGGATTTCTTGAGACCCCTCAGCCTGAGGCT
s panTro5.chr6                 29967965 53 + 175400573 TCTTCTTCTCCCTATGGAATAAGGGATTTCTTGAGACCCCTCAGCCTGAGGCT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30201646 53 + 173848474 TCTTCTTCTCCCTATGGAATAAGGGATTTCTTGAGACCCCTCAGCCTGAGGCT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6002225 53 +   6154872 TCTTCTTCTCCCTATGGAATAAGGGATTTCTTGAGACCCCTCAGCCTGAGGCT
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30187737 53 + 172585720 TCTTATTCTCCATGTGGAGTAGGGGTTTTCCTGAGACCCTTCAGCCTGAGGCT
i rheMac8.chr4                 I 327 C 0
s macFas5.chr4_KE145577_random    54467 53 +    231697 TCTCCTTTTCCTTGTGGAGTAGGGTGTTTCTTCAGACCCCTCAGCCTGAGGCA
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         647647 53 +    766320 TCTTATTCTCCATGTGGAGTAGGGGTTTTCTTGAGACCCTTCAGCCTGAGGCT
i cerAty1.NW_012002711v1       C 0 C 0
s colAng1.NW_012115566v1        2756105 53 -   3067355 TCTTATTCTCCATGTGGAGTAGGGGTTTTCTTGAGACACTTCAGCCTGAGGCT
i colAng1.NW_012115566v1       I 16 C 0
s saiBol1.JH378364               153307 53 +    187130 TCTTCTTCTTCCTGTGAAGTAGAAAGTTTTTTGAGATCCCTCAGCCTGAGGCT
i saiBol1.JH378364             C 0 N 0
s cebCap1.NW_016107755v1         430595 53 -   1771730 TCTTCTTCTCCCTACAGAGTAGAAAGTTTCTTGAGATCCCTCAGCCGGAGGCT
i cebCap1.NW_016107755v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=28275.000000
s hg38.chr6_GL000254v2_alt      1005466 10 +   4827813 GCCTCCGCCC
s panTro5.chr6                 29968018 10 + 175400573 GCCTCCGCCC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30201699 10 + 173848474 GCCTCCGCCC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6002278 10 +   6154872 GCCTCTGCCC
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30187790 10 + 172585720 GCCTCTGCCC
i rheMac8.chr4                 C 0 I 30651
s macFas5.chr4_KE145577_random    54520 10 +    231697 GCCTCCACCC
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         647700 10 +    766320 GCCTCTGCCG
i cerAty1.NW_012002711v1       C 0 I 3
s colAng1.NW_012115566v1        2756158 10 -   3067355 ACCTCTGCCC
i colAng1.NW_012115566v1       C 0 I 4563
s cebCap1.NW_016107755v1         430648 10 -   1771730 ACCTCTGCCC
i cebCap1.NW_016107755v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=70394.000000
s hg38.chr6_GL000254v2_alt      1005476 45 +   4827813 --ACTCTGCACCTGGGGATTGCCACAGCCACAGCCACCATCTCCCAC
s panTro5.chr6                 29968028 45 + 175400573 --ACTCTGCACCTGGGGATTGCCACAGCCACAGCTACCATCTCCCAC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30201709 45 + 173848474 --ACTCTGCACCTGGGGATTGCCACAGCCACAGCCACCATCTCCCAC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6002288 45 +   6154872 --ACTCTGCACCTGGGGATTGCCACAGCCACAGCCACCATCTCCCAC
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    54530 45 +    231697 --CCTCTGCACCTGGGGACTGCCACTGCCACAACCATCATCTCCCAC
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         647713 44 +    766320 --GCTTTGCACCCTGAGATCACCACTGCCACAGCCA-CATCTCCCAC
i cerAty1.NW_012002711v1       I 3 I 43832
s cebCap1.NW_016107755v1         430658 47 -   1771730 ACTCTCTGCACTCGGGGGTTGCCACTGCCACAGCCACCATCTCCCCT
i cebCap1.NW_016107755v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2756168 4563 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=333069.000000
s hg38.chr6_GL000254v2_alt      1005521 313 +   4827813 ATGGACCCTTCTAGAGAGAGAGTTTCAAATTTGAATTCCTGTTCCATTCAATATGCTTTACAGCATCGGTATTGGAGGAAATCCTATTAAGAATATCCAGCTGAAATTATGAACATCTTTATTGGACATCAACATTGAAAGCAGGAATTTTGGGAAATTAGCATGTGATTTTCACAACCTTTTTCTGGCCAATGCCCCAGTGACCTACAAGGAAACCTTTACTGCCCACAGGGAACCAGAACTGACAATTCCTCTACGGCAGATGCTGCAGGTGAGAGCAGGAGCAAC--CAGACCTGCACTGCCCC-TGCTGTGG
s panTro5.chr6                 29968073 313 + 175400573 ATGGACCCTTCTAGAGAGAGAGTTTCAAATTTGAATTCCTGTTCCATTCAATGTGCTTTACAGCATCGGTATTGGAGGAAATCCTATTAAGAATATCCAGCTGAAATTATGAACATCTTTATTGGACATCAACATTGAAAGCAGGAATTTTGAGAAATTAGCATGTGATTTTCACAACCTTTTTCTGGCCAGTGCCCCAGTGACCTACAAGGAAACCTTTACTGCCCACAGGGAACCAGAACTGACAATTCCTCTACGGGAGATGCTGCAGGTGAGAGGAGGAGCAAC--CAGACCTGCACTGCCCC-TGCTGTGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30201754 313 + 173848474 ATGGACCCTTCTAGAGATAGAGTTTCAAATTTGAATTCCTGTTCCATTCAATATGCTTTACAGCATCGGTATTGGAGGAAATCCTATTAAGAATATCCAGCTGAAATTATGAACATCTTTATTGGACATCAACATTGAAAGCAGGAATTTTGAGAAATTAGCATGTGATTTTCACAACCTTTTTCTGGCCAATGCCCCAGTGACCTACAAGGAAACCTTTACTGCCCACAGGGAACCAGAACTGACAATTCCTCTACGGGAGGTGCTGCAGGTGAGAGCAGGAGCAAC--CAGACCTGCACTGCCCC-TGCTGTGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6002333 315 +   6154872 ATGGACCCTTCTAGAGAGAGAGTTTCAAATTTGAATTCCTGTTCCATTCAATATGCCTTACAGCATCGGTATTGGAGGAAATCCTATTAAGAATATCCAGCTGAAATTACGAACATCTTTATTGGACATCAACATTGAAAGCAGGAATTTTGAGAAATTAGCATGTGATTTTCACAACCTTTTTCTGGCCAATGCCCCAGTGACCTACAAGGAAACCATTACTGCCCACAGGGAACCAGAACTGAGAATTCCTCTACAGAAGACACCACAGGTGAGAGCAGGAGCAACCACAGACCTGCACTGCCCC-TGCTGTGG
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    54575 287 +    231697 ATGGACCCTCAGAGAAAGGAAGCTCCAAATTTGAGTTCCTGTTCCATTCAACATGCTTTA---CATCAGTATCGG-------------------TCCCAACTGAAATTATG-------TTGATGGACATCAACATTTAAAGCAGGAATTTTGAGAAACTGACATGTGATTTTCATACCTTTTTTCTGGGCAATGTTCCAGTGACCTACGAGGAAACCATTCCTGCCTACAGGGAACCAAAGCTGAGAATCCCCCTATAGGAGACACCACAGGTGAGAGCAGGAGCGACCACAGACCTGCACTCCCCCGTGCTGTGG
i macFas5.chr4_KE145577_random C 0 I 372
s cebCap1.NW_016107755v1         430705 311 -   1771730 ATAGACCCTCCTGGAGAGGGAGCTCCAAGTGTGAGTTCCTGTTTCATTCAATCTGCTTTACAACATTAATATTGGTGGGAATCCTTTTAAG---ACCCAGCTGAAATTATGAACATCTTGATTGGACATCAACATTTAGAGCAGTAATTTGGAGAAATTAGAACATAACTTTCATATCATTTTCTTGGTCAATGCCCCGGTGACTTACAAGG-CACCGTTCCTGCCCACAGGGAACCAGCACTGACAGTCCCTCCACAGGAGACTCCGAAGGCGAGAGCAGGAGCCACTACTGACCTGCACTGCCCC-TGCTGTGG
i cebCap1.NW_016107755v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2756168 4563 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=3910.000000
s hg38.chr6_GL000254v2_alt      1005834 4 +   4827813 GTGC
s panTro5.chr6                 29968386 4 + 175400573 GTGC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30202067 4 + 173848474 GTGC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6002648 4 +   6154872 GTGC
i gorGor5.CYUI01015250v1       C 0 C 0
s cebCap1.NW_016107755v1         431016 4 -   1771730 GTGC
i cebCap1.NW_016107755v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2756168 4563 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e macFas5.chr4_KE145577_random    54862 372 +    231697 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=1500.000000
s hg38.chr6_GL000254v2_alt      1005838 1 +   4827813 C
s panTro5.chr6                 29968390 1 + 175400573 C
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30202071 1 + 173848474 C
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6002652 1 +   6154872 C
i gorGor5.CYUI01015250v1       C 0 I 391
s macFas5.chr4_KE145577_random    55234 1 +    231697 C
i macFas5.chr4_KE145577_random I 372 C 0
s cebCap1.NW_016107755v1         431020 1 -   1771730 C
i cebCap1.NW_016107755v1       C 0 N 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2756168 4563 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=6174.000000
s hg38.chr6_GL000254v2_alt      1005839 14 +   4827813 CCAAAAAACATGGT
s panTro5.chr6                 29968391 14 + 175400573 CCAAAAAACATGGT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30202072 14 + 173848474 CCAAAAAACATGGT
i panPan2.chr6                 C 0 C 0
s macFas5.chr4_KE145577_random    55235 14 +    231697 CCCAAAAACACAGC
i macFas5.chr4_KE145577_random C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2756168 4563 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I
e gorGor5.CYUI01015250v1        6002653 391 +   6154872 I

a score=231249.000000
s hg38.chr6_GL000254v2_alt      1005853 300 +   4827813 -CCTGGGGACTGTG-TTCCTGGGGGCTAGACAAGGTAACACTTGGACATATGATGAAAACAGGGACCACAGCTGCCCTGACAAGGAGCTGGTTCCTGCTTCCCAAATGGCCCAGGGATGTCTGCTTATATACTCCTCCATAACATCTGCACAGAAACTCAGGGAGGCA-GGGCCATGTGGTGGGAA----------------CCTCCAGTGATGCAGAGGACATGATACCCCC--AAGATAGCTCCTGGAGGAGGCCCATGGGGAGCTGCAAAGTGGACAGAGATGGCTGTGTGCACTCAGGACCCCCCCTGTTACAAGGG
s panTro5.chr6                 29968405 300 + 175400573 -CCTGGGGACTGTG-TTCCTGGGGGCTAGACAAGGTAACACTTGGACATATGATGAAAACAGGGACCACAGCTGCCCTGACAAGGAGCTGGTTCCTGCTTCCCAAATGGCCCAGGGATGTCTGCTTATATACTCATCCATAACATCTGCACAGAAACTCAGGGAGGCA-GGGCCATGTGGTGGGAA----------------CCTCCAGTGACCCAGAGGACATGATACCCCC--AAGACAGCTCCTGGAGGAGGCCCATGGGGAGCTGCAAAGTGGACAGAGATGGCCGTGTGCACTCAGGACCCTCCCTGTTACAAGGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30202086 300 + 173848474 -CCTGGGGACTGTG-TTCCTGGGGGCTAGACAAGGTAACACTTGGACATATGATGAAAACAGGGACCACAGCTGCCCTGACAAGGAGCTGGTTCCTGCTTCCCAAATGGCCCAGGGACGTCTGCTTATATACTCCTCCATAACATCTGCACAGAAACTCAGGGAGGCA-GGGCCATGTGGTGGGAA----------------CCTCCAGTGACCCAGAGGACATGATACCCCC--AAGGCAGCTCCTGGAGGAGGCCCATGGGGAGCTGCAAAGTGGACAGAAATGGCCGTGTGCACTCAGGACCCTCCCTGTTACAAGGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6003044 299 +   6154872 -CCTGGGGACTGTG-TTCCTGGGGGCTAGACAAGGTAACACTTGGACATATGATGAAAACAGGGACCACAGCTGCCCTGACAAGGAGCTGGCTCCTGCTTCCCAAATGGCCCAGGGACGTCTGCTTATTTACTCATCCATAACATCTGCACAGAAACTCAGGGAGGGA-GGGCCATGTGGTGGGAA----------------CCTCGAGTGACCCAGAGGACATGACACCCCC--GAGGCAGCTCCTGGAGGAGGCACAC-GGGAGCTGCAAAGTGGACAGAAATGGCCGTGTGCACTCAGGACCCTCCCTGTTACAACGG
i gorGor5.CYUI01015250v1       I 391 C 0
s macFas5.chr4_KE145577_random    55249 320 +    231697 CCCTGGGGACTATGATTCTCGGGGGCTGGAAAAACTAACATGTGGACATAGGATGAAAACAGGGAAC-CAGCTGCCCTGACAGGGTGCTGGTCCCCATTCCCCAAATAGCCCAGGGACATCCGCTTATCACCTTGTCCATATCATCTGCAAGGAAACACAGGGAGGCAGGGGCCACATGGTGGGAACCTGGAAAAAGCATGGCCTCGAGCGACCCAGAAGACACAACATCCCTGAGAGAGAGCTCTCGGATGAGGCGCATGGGGAGCTGCCAAGTGGAAGAGGATGGCCGTGTGCACTCAGGACCCTCCCTGGTACAAGGG
i macFas5.chr4_KE145577_random C 0 I 13408
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2756168 4563 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=137877.000000
s hg38.chr6_GL000254v2_alt      1006153 174 +   4827813 GACCTCAAAG-GGGCTGCACAGGCAG-GCCTCCCAGTCTGGGCTTCGTGGGTCTTTTTCTTGGTGTCCTCCTGATGGCTGGAGAAACAGGAGAGAGGGATGCAGAGAGGAAGAGACTAGGGGCACCGCCTCTCCTCGGATTCCTCTCCAGTTTCTAGCCCCTCCCCAGATCACAGC
s panTro5.chr6                 29968705 174 + 175400573 GACCTCAAAG-GGGCTGCACAGGCAG-GCCTCCCAGTATGGGCTTCGTGGGTCTTTTTCTTGGTGTCCTCCTGATGGCTGGAGAAACAGGAGAGAGGGATGCAGAGAGGAAGAGACTAGGGGCACCGCCTCTCCTCGGATTCCTCTCCAGTTTCTAGCCCCTCCCCAGATCACAGC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30202386 174 + 173848474 GACCTCAAAG-GGGCTGCAGAGGCAG-GCCTCTCAGTCTGGGCTTCGTGGGTCTTTTTCTTGGTGTCCTCCTGATGGCTGGAGAAACAGGAGAGAGGGATGCAGAGAGGAAGAGACTAGGGGCACCGCCTCTCCTCGGATTCCTCTCCAGTTTCTAGCCCCTCCCCAGATCACAGC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6003343 174 +   6154872 GACCTCAAAG-GGGCTGCAGAGGCAG-GCCTCTCAGTCTGGGCTTCGTGGGTCTTTTTCTTGGTGTCCTCATGATGACTGGAGAAACAGGGGAGAGGGAGGCAGAGAGGAAGAGACTAGGGGCCCCACCTCTCCTCGGATTCCTCTCCAGTTTCTAGCCCCTCCCCAGATCACAGC
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    68977 173 +    231697 GGCCACAAAGAGAACTGCGCATGCAGAGGCCCTCAGTC--AGCCTTGTGGGTCTTTTTCTTGGTGTCCTTCTGATGGCTGGAGAAACATGGGTGAGGGATGCAGAGAGGGAGGGACTAGAGGCTCTGCCTGTCCTT-GATTCCTCTCCAGTTTCTAACCCCTCACCAGATCACAGC
i macFas5.chr4_KE145577_random I 13408 M 599
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2756168 4563 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=15735.000000
s hg38.chr6_GL000254v2_alt      1006327 30 +   4827813 CGCCTTTACTATTTACTCCCACTGAAGCCA
s panTro5.chr6                 29968879 30 + 175400573 CGCCTTTACTATTTACTCCCACTGAAGCCA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30202560 30 + 173848474 CGCCTTTACTATTTACTCCCACTGAAGCCA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6003517 30 +   6154872 TGCCTTTACTATTTACTCCCTCTGAGGCCA
i gorGor5.CYUI01015250v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2756168 4563 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e macFas5.chr4_KE145577_random    69150 599 +    231697 M
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=132332.000000
s hg38.chr6_GL000254v2_alt      1006357 161 +   4827813 TGATCATCCAGGCCCTCAGCAATCAGCACGTGATTCTCAACTCACCCCACCTGGACGCACCGTGGTGAGCCCAAGAAACAAGAGAGACCAGGATGGGGACAGAGCAGGTGCCACAGCCCTCCCTGCTGCCCACTCCTCACCTGCAGCAGGAGGAGGCCACC
s panTro5.chr6                 29968909 161 + 175400573 TGATCATCCAGGCCCTCAGCAATCAGCACATGATTCTCAACTCACCCCACCTGGACGCACCGTGGTGAGCCCAAGAAACAAGAGAGACCAGGATGGGGACAGAGCAGGTGCCACGGCCCTCCCTGCTGCCCACTCCTCACCTGCAGCAGGAGGAGGCCACC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30202590 161 + 173848474 TGATCATCCAGGCCCTCAGCAATCAGCACGTGATTCTCAACTCACCCCATCTGGATGCACCTTGGTGAGCCCAAGAAACAAGAGAGACCAGGATGGGGACAGAGCAGGTGCCATGGCCCTCCCTGCTGCCCACTCCTCACCTGCAGCAGGAGGAGGCCACC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6003547 160 +   6154872 TGATCATCCAGGCCCTCAGCAATCAGCACGCGATTCTCAACTCACCCCACTTGGATGCACCGTGGTGAGCCCAAGAAAC-AGAGAGACCAGGATGGGGACAGAGCAGGTGCCACGGCCCTCCCTGCTGTCCACTCCTCACCTGCAGCAGGAGGAGGCCACA
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    69755 155 +    231697 TGATCATCCAGGCCCTCAGCAATCAGCAAGCGATTCCCAACTCA-TCCACCTGGATGCGCCCTGATCAGCCTGAGAGAC-----AGAGCGGGATGGGGACAGAGCAGGTGCCACGGCCCTCCCTACGGCCCACTCCTCACCTGCAGCAGGAGGAGGCCACA
i macFas5.chr4_KE145577_random M 599 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2756168 4563 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=54677.000000
s hg38.chr6_GL000254v2_alt      1006518 47 +   4827813 GCTGGACATTTGAGGGCCGTGGCCCAGCCCTGGCTTGGGCAGGACTT
s panTro5.chr6                 29969070 47 + 175400573 GCTGGACATTTGAGGGCCGTGGCCCAGCCCTGGCTTGGGCAGGACTT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30202751 47 + 173848474 GCTGGACATTTGAGGGCCATGGCCCAGCCCTGGCTTGGGCAGGACTT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6003707 47 +   6154872 GCTGGGCATTTGAGGGCCGTGACCCAGCCCTGGCTTGGCCAGGACTT
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    69910 47 +    231697 GCTGGACAGTGGATTGTCTTGGCTCAGCCCTGGCTTGGGAAGGACTT
i macFas5.chr4_KE145577_random C 0 C 0
s colAng1.NW_012115566v1        2760731 47 -   3067355 GCTGGACATTTGATGACCTTGGTCCGGCCCTGGCTTGGGCAGGACTT
i colAng1.NW_012115566v1       I 4563 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1            867 57807 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=23299.000000
s hg38.chr6_GL000254v2_alt      1006565 11 +   4827813 AGGGGTGTAGA
s panTro5.chr6                 29969117 11 + 175400573 AGGGGTGTAGA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30202798 11 + 173848474 AGGGGTGTAGA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6003754 11 +   6154872 AGGGGTATAGA
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    69957 11 +    231697 AAGGATATAAA
i macFas5.chr4_KE145577_random C 0 I 1982
s macNem1.NW_012013156v1          58674 11 +    243043 aGGGGTGTAGA
i macNem1.NW_012013156v1       I 57807 C 0
s manLeu1.NW_012107142v1          31502 11 -    735854 aGGGGTGTAGA
i manLeu1.NW_012107142v1       N 0 C 0
s colAng1.NW_012115566v1        2760778 11 -   3067355 AGGTGTATAGA
i colAng1.NW_012115566v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=234668.000000
s hg38.chr6_GL000254v2_alt      1006576 151 +   4827813 TGGAGATGTGGCTCCCATTCCCCTCCCAAATACCCCAATGTCCATCCCCTGTTCCAGGA-CCTTGTTACCTACATGTCTATCTGTGCAGGAGCTATGAGGGGACCCTGCTGCCCAGAGAGGAGTCCTTCCATCTCCAGCCACTGCCCCGTTT
s panTro5.chr6                 29969128 151 + 175400573 TGGAGATGTGGCTCCCATTCCCCTCCCAAATACCCCAACGTCCATCCCCTATTCCAGGA-CCTTGTTACCTACATGTCTGTCTGTGCAGGAGCTATGAGGGGACCCTGCTGCCCAGAGAGGAGTCCTTCCATCTCCAGCCACTGCCCCATTT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30202809 151 + 173848474 TGGAGATGTGGCTCCCATTCCCCTCCCAAATACCCCAATTTCCATCCCCTGTTCCAGGA-CCTTGTTACCTACATGTCTATCTGTGCAGGAGCTATGAGGGGACCCTGCTGCCCAGAGAGGAGTCCTTCCATCTCCAGCCACTGCCCCGTTT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6003765 151 +   6154872 TGGAGATGTGGCTCCCGTTCCCCGTTCAAATACCCCAACTTCCATCCCCTGTTCCAGGA-CCTTGTCACCTACATGTCTATCTGTGCAGGAGCTATGAGGGGACCCTGCTGCCCAGAGAGGAGTCCTTCCATCTCCAGCCACTGCTTCCTTT
i gorGor5.CYUI01015250v1       C 0 C 0
s macNem1.NW_012013156v1          58685 152 +    243043 TGGCAACGTGGCTCTCATTCCCCTCCCAAATACCCCAACTTTCATCGCCTGTTCCAGAAGCCTTGTCACCTACATGCCTATCTGTACAGAAGGTATGAGGGAACCCTACTGCCCAGCCAGGGACCTTCCCATCTCTAGCAGCTGTCCCCTTT
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          31513 152 -    735854 TGGCAACGTGGCTCTCATTCCCCTCCCAAATACCCCAACTTTCATCACCTGTTCCAGAAGCCTTGTCACCTACATGCCTATCTGTACAGAAGGTATGAGGGGACCCTACTGCCCAGCCAGGGACCTTCCCATCTCTAGCAGCTGTCCCCTTT
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2760789 151 -   3067355 TGGAGATGTGGCTCCCATT-CCCTCCCAAATACTCCAACTTCCATCCCCTGTTCCAGAAGCCTTGTCACTTACATGTCTATCTGTGTAGGAGCAACGAGGGGACCCTCTTGCCCAGAGAGGAGTCCATGCAACTCCAGCCACTGTCCCCTAT
i colAng1.NW_012115566v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macFas5.chr4_KE145577_random    69968 1982 +    231697 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74690058 12010 + 122973662 I

a score=753489.000000
s hg38.chr6_GL000254v2_alt      1006727 381 +   4827813 TCTCACCTGGA--CTCTGCAGCTGATGTTGTCTTCTTCTTGCACCAAAGGACACAGAGAAtactactactactactactaataataataatgacagtagcaataGCAG---CATACAGAATGGC-TGCCATTGACTCTGAAGCACCAGGGCCTTCTCTAAAAAAAGGGCCTTGTGACACACTGAGCACGCAAAGCCACAGCCGTCCCTGCTATCCCCACCCTGGCCTGA-CCTCCCTAGGTCGAAACCCTTGAGAGTTGCCCCTGGCTCACCAGAGGGCACAGGGTGAGTGCTGTGATTCCCTCTGTGTCCCATGTAGCAGGTGAACCTCTGCTCCTCTCCTCGGGGAATCCTGGTGGCCATGCAGGTCTGGTAGGTCCCATTCCC--AT
s panTro5.chr6                 29969279 381 + 175400573 TCTCACCTGGA--CTCTGCAGCTGATGTTGTCTTCTTCTTGCACCAAAGGACACAGAGAAtactactactactactaatactaataataATGACAGTAGCAACAGCAG---CATACAGAATGGC-TGCCATTGACTCTGAAGCACCAGGGCCTTCTCTAAAAAAAGGGCCTTGTGACACACTGAGCATGCAAAGCCATAGCCGTTCCTGCTATCCCCACCCTGGCCTGA-CCTCCCTAGGTCGAAACCCTTGAGAGTTGCCCCAGGCTCACCAGAGGGCACAGGGTGAGTGCTGTGATTCCCTCTGTGTCCCATGTAGCAGGTGAACCTCTGCTCCTCTCCTCGGGGAATCCTGGTGGCCATGCAGGTCTGGTAGGTCCCATTCCC--AC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30202960 383 + 173848474 TCTCACCTGGACTCTCTGCAGCTGATGTTGTCTTCTTCTTGCACCAAAGGACACAGAGaataatactacaaataataatactaataataatgacagtagcaataGCAG---CATACAGAATGGC-TGCCATTGACTCTGAAGCACCAGGGCCTTCTCTAAAAAAAGAGCCTTGTGACACACTGAGCACGCTGAGCCACAGCCATCCCTGCTATCCCCACCCTGGCCTGA-CCTCCCTAGGTCGAAACCCTTGAGAGTTGCCCCAGGCTCACCAGAGGGCACAGGGTGAGTGCTGTGATTCCCTCTGTGTCCCATGTAGCAGGTGAACCTCTGCTCCTCTCCTCAGGGAATCCTGGTGGCCATGCAGGTCTGGTAGGTCCCATTCCC--AT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6003916 382 +   6154872 GCTCACCTGGACTCTCTGCAGCTGATGTTGTCTTCTTCTTGCACCAAAGGACACAGAGaatactactactaataataatactaataataatGACAGCAGCAACAGCAG---CATACAGAATGGC-TGCCATTGACTCTGAAGCACCAGGGCCTTCTCTAAAAAAAGGGCCTCGTGACACACTGAGCACGCAGAGCCACAGCCATCCCTGCTATCCCCACCCTGGCCTGA-CCTCCCTGGGTCGAAACCATCGAGAGTTGCCCCACGCTCACCAGAGGGCACAGGGTGAGTGCTGTGATTCCCTCTGTGTCCCATGTAGCAGGTGAACCTCTGCTCCTCTCCTC-GGGAATCCTGGTGGCCACGCAGGTCTGGTAGGTCCCATTCCC--AT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74702068 380 + 122973662 TCTTACCTGGACTCTCTACAGCTGATGTTG---AATTTTTGCACCAAAGGACACAGAGaataatactaataataataacactaataataaCGACAGCAGCAACAGCAG---CATACAGAATGGT-TGGCATTGACTCTGAAGCACCAGGGCCTTCTCTAAAAAAAGGGCCTTGTGACACACTGAGCACGCAGAGCCACAGCCGTCCCTGCTATCCCCACCCTGGCCTGA-CCTCCCTAGGTCGAAACCCTCGAGAGTTGCCCCAAGTTCACCAGAGGGCACAGGGTGAGTGCTGTGATTCCCTCTGTGTCCCATGTAGCAGGTGAACCTCTGCTCCTCTCCTCGGGGAATCCTGGTGGCCATGCAGGTCTGGTAGGTCCCATTCCC--AT
i nomLeu3.chr1a                I 12010 C 0
s macNem1.NW_012013156v1          58837 386 +    243043 TCTGACCTGGACCCGCTGCACCTGATGTTGTCTTCTTCTTGTATCAAAGGACACAGAGaataatactactactaataatactaatgatgatGAAAGCAGCAACAGCAGCAACATATGGAATGGCTTGTCATCAACTCTGAAGCACCAGGGCCATCCCTGGAAAAAACGGCCTGTTACATACCAGGTACCCAAAGCCACAGTCGTTCCTGCTTCCCCCACCCTGGCCTGATCCTCCTTATGTTGGAACCCTCAAGGGTGGTCCCAGGTTCACTAGAGGACACAAGGTGAGTGCTGTGATTCCTACTGTATCCGATGGAGCAGATGACCCTCTGCTCCTCTCCTTGGGGAATCCTGCAGGCCACCTCTGTCTGGTAGGTCCCACCCCA----
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          31665 386 -    735854 TCTGACCTGGACCCGCTGCACCTGATATTGTCTTCTTCTTGTATCAAAGGATGCGGAGaataataatactactaataatactaatgatgatGAAAGCAGCAACAGCAGCAACATATGGAATGGCTTGTCATCAACTCTGAAGCATCAGGGCCATCCCTGGAAAAAACAGCCTGTTACATACCAGGTACCCAAAGCCACAGTCGTTCCTGCTTCCCCCACCCTGGCCTGATCCTCCTTATGTTGGAACCCTCAAGGGTGGTCCCAGGTTCACGAGAGGACACAAGGTGAGTGCTGTGATTCCTACTGTATCCGATGGAGCAGGTGACCTTCTGCTCCTCTCCTTGGGGAATCCTGCAGGCCACCTCTGTCTGGTAGGTCCCACCCCA----
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2760940 379 -   3067355 TCTCACCTGGACCCTCTGCAGCTCATGTTGTCTTCTTAC----TCCAAGGACACAGAGaataataatacaaatgttaatattaataataatGACAGCAGCAACAGCAG---TATACAGAATGGC-TGCCATTAAATCTGACACACCAGGACT-TCCCTGAAAAAAGAGGCTTGTTACACACTGGGTACCCAGACCCCAAACTGTTCCTGCTGTCCCCACCCTGACCTGATGCTCCCTATGTCAGAACCCTCGAGGGTTGCCCCAGGCTCATCAGAGGGCACAGGGTGAGGGCTGTGATTCCTGCTGTGTCCCATGGAGCAGATCAAGCTCTGCTCCTCTCCTCAGGGAATCCTGGTGGCCATGCAGGTCTGGTAGGTCCCATTCCCAT--
i colAng1.NW_012115566v1       C 0 I 207
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macFas5.chr4_KE145577_random    69968 1982 +    231697 I
e rheMac8.chr4                 30187800 30651 + 172585720 I

a score=893436.000000
s hg38.chr6_GL000254v2_alt      1007108 553 +   4827813 TGGGCAGGACACCCCTAGACTGCTGGGCATCCTGGCTCAAAGATGCCTCATCCTGATGCCAGGTCAGAGAGATATTCCAGGGATAGAAGATGGAGGCCAGCACATCATGGTGACATTGCCTTCTAAGGCCCCACTGTGCATCTCATTCACTGTG-----GGGGTCATTGGAGACAAAAGGGCAGAGCCAGTGAGGCATGTGGCCAAGCCTTTCTCCCCTCTAAGGGAGATGCAGGGAACAGGACTGGTCCTCTCTATTGTTCTGACTCTCGCTGAAACCCACACTGACCCCAGACCTTCTGCAAATCGGTCCTTA-CCTGGGGTCCAATTCCCCTAGGCTTGCTGGAAGATGGGCCTCAGGACTGTGGCCTCACACTCTGGGACTCCGGCTTTGATGCTGAGGAGAGGGTTGTCAGGGGTGGGCTCCTGGGTCGTGGGGCTAGGAGGTAGCTCTCCAGGATGGGCAGGCTGGGAGGCAGATGAGGCAGCCCTGGCCTTGAGGCCTTCCTTTCCTGCCTAATGCCCACCCCAGGTTCAGGCTTCTATAGGAGGACCCACT
s panTro5.chr6                 29969660 553 + 175400573 TGGGCAGGACACCCCTAGACTGCTGGGCATCCTGGCTCAAAGATGCCTCATCCTGATGCCAGGTCAGAGAGATATTCCAGGGATAGAAGATGGAGGCCAGCACATCATGGTGACATTGCCTTCTAAGGCCCCATTGTGCATCTCATTCACTGTG-----GGGGCCATTGGAGACAAAAGGGCAGAGCCAGTGAGGCATGTGGCCAAGCCTTGCTCCCCTCTAAGGGAGATACAGGGAACAGGACTGGTCCTCTCTATTGTTCTGACTCTCGCTGAAACCCACACTGACCCCAGACCTTCTGCAAATCGGTCCTTA-CCTGGGGTCCAATTCCCCTAGGCTTGCAGGAAGATGGGCCTCAGGACTGTGGCCTCACACTCTGGGACTCCGGCTTTGATGCTGAGGAGAGGGTTGTCAGGGGTGGGCTCCTGGGTCGTGGGGCTAGGAGGTAGCTCTCCAGGATGGGCAGGCTGGGAGGCAGATGAGGCAGCCCTGGCCTTGAGGCCTTCCTTTCCTGCCTAATGCCCACCCCAGGTTCAGGCTTCTATCGGAGGACCCACT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30203343 553 + 173848474 TGGGCAGGACACCCCTAGACTGCTGGGCATCCTGGCTCAAAGATGCCCCATCCTGATGCCAGGTCAGAGAGATATTCCGGGGATAGACGATGGAGCCCAGCACATCATGGTGACATTGCCTTCTAAGGCCCCACTGTGCATCTCATTCACTGTG-----GGGGTCATTGGAGACAAAAGGGCAGAGCCAGTGAGGCATGTGGCCAAGCCTTGCTCCCCTCTAAGGGAGATACAGGGAACAGGACTGGTCCTCTCTATTGTTCTGACTCTCGCTGAAACCCACACTGACCCCAGACCTTCTGCAAATCGGTCCTTA-CCTGGGGTCCAATTCCCCTAGGCTTGCAGGAAGACGGGCCTCAGGACTGTGGCCTCACACTCTGGGACTCCTGCTTTGATGCTGAGGAGAGGGTTGTCAGGGGTGGGCTCCTGGGTCGTGGGGCTAGGAGGTAGCTCTCCAGGATGGGCAGGCTGGGAGGCAGATGAGGCAGCCCTGGCCTTGAGGCCTTCCTTTCCTGCCTAATGCCCACCCCAGGTTCAGGCTTCTATCGGAGGACCCACT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6004298 552 +   6154872 TGGGCAGGACACCCCTAGACTGCTGGGCATCCTGGCTCAAAGATGCCTCATCCTGATGCCAGGTCAGAGAGATATTCCGGGGATAGAAGCTGGAGCCCAGCACATCATGGTGACATTGCCTTCTAAGG-CCCACTGTGCATCTCATTCACTGAG-----GGAGTCATTGGAGACAAAAGGGCAGAGCCAGTGAGGCATGTGGCCAAGCCTTGCTCCCCTCTAAAGGAGATGCAGGGAACAGGACTGGTCCTCTCTATTGTTCTGACTCTGGCTGAAACCCTCACTGACCCCAGACCTTCTGCAAATCTGTCCTCA-CCTGGGGTCCAATTCCCCTAGGCTTGCAGGAAGATGGGCCTCGGGACTGTGGACTCACACTCTGGGACCCCTGCTTTGATGCTGAGGAGAGGGTTGTCAGGGGTGGGCTCCTGTGTTGTGGGGCTAGGAGGCAGCTCTCCAGGATAGGCAGGCTGGGAGGCAGATGAGGCAGCCCTGGCCTTGAGGGCTTCCTTTCCTGCCTAATACCCACCCTGGGTTCAGGCTTCTATCGGAGGACCCACT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74702448 553 + 122973662 TGGGCAGGACACCCTTAGACTGCTGGGCATCCTGGCTCAAAGATGCCTCATCCTGATGCCAGGTCAGAGAGATATTCCGGGGATAGAAGCTGGAGCCCAGCACATCATGGTGACATTGCCTTCTGAGGCCCCACTGTGGATCTCATTCACTGTG-----GGGGTCATTGGAGACAAAAAGGCAGAGCCAGTGAGGCATGTGGCCAAGCCTTGCTCCCTTCTAAGGGAGATGCAGGGAACAGGACTGGTCCTCTCTATTGTTCTGACTCTCGCTGAAACCCTCACTGACCCCAGTCCTTCTGCAAATCTGTCTTCA-CCTGGGGTCCAATTCCCCTAGGCTTGCAGGAAGATGGGCCTCAGGACTGTGGCCTCACACTCTGGGACCCCTGATTTGATGCTGAGGAGAGGGTTGTCAGAGGTGAGCTCCTGGGTCGTGGGGCTAGGAGGTAGCTCTCCAGAATGGGCAGGCTGGGAGGCAGATGAGGCAGCCCTGGCCTTGAGGCTTTCCTTTCCTGCCTAGTACCCACCCCAGGTTCAGGCTTCTATTGGAGGATCCACT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          59223 555 +    243043 TGGACAGAATACCCCCAGACTGCTGGGCATCCTGGCTCAAAGACGCCCCATCCTGACACCAGGTCAGAGAGATATTCTGGAGATAGAAGCCAGAGCCCAGCATATCAGGGTCATGTTGCCCTCCAGGGCCTCGCTGCAGGTCACATTCATGGTGGGGGAGGGGAGGCTGGAGAAGAAAGGGCGGAGACAATGAGGCACGTGGCCAAACCCTACTCCCCTCTAATGGAGATGCAGGGAACAGAGCTGGTCCACTCCACTGTTCCAACTCTGGTAGAAGTCCTCACAGACCCCAGACCTTCTGCAAGTCTGTCCTCACCCTGGGGCCCAGTTCCTCTAGGCTGGCAGAAGGATGGGCCTGGAGACTGTGTCTTTCTGCTCTGGGATCCCTGCACTGATGCTGAGGAGGGGAAGGTCAGGCGTGGGCTCCTGGTACGTGGGGCCAGAGG--AACTCTTTGGGATGGGCAGGCTGGGAGGCAGATGGGGCAGCCTTGGCCCTGGGG-CTTCCTCTCCTGCCTGACACCCACCC-AGGTTCAGGCTTCTGTCAGAGGGCCCACT
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          32051 555 -    735854 TGGACAGAATACCCCCAGACTGCTGGGCATCCTGGCTCAAAGACGCCCCATCCTGACACCAGATCAGAGAGATATTCTGGAGACAGAAGCCAGAGCCCAGCATATCAGGGTCATGTTGCCCTCCAGGGCCTCACTGCAGGTCACATTCATGGTGGGGGAGGGGAGGTTGGAGAAGAAAGAGCAGAGACAATGAGGCACGTGGCCAAACCCTGCTCCCCTCTATTGGAGATGCAGGGAACAGGGCTGGTCCACTCCACTGTTCCAACTCTGGCAGAAGCCCTCACGGACCCCAGACCTTCTGCAAGCCTGTCCTTACCCTGGGGCCCAGTTCCTCTAGGCTGGCAGAAGGATGGGCCTTGAGACTGTGTCTTTATGCTCTGGGATCCCTGCATTGATGCTGAGGAGGGGAAGGTCAGGCGTGGGCTCCTGGTACGTGGGGCCAGAGG--AACTCTTTGGGATGGGCAGGCTGGGAGGCAGATGGGGCAGCCTTGGCCCTGGGG-CTTCCTCTCCTGCCTGATACCCACCC-AGGTTCAGGCTTCTGTGAGAGGGCCCACT
i manLeu1.NW_012107142v1       C 0 I 281
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2761319 207 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macFas5.chr4_KE145577_random    69968 1982 +    231697 I
e rheMac8.chr4                 30187800 30651 + 172585720 I

a score=4628.000000
s hg38.chr6_GL000254v2_alt      1007661 4 +   4827813 ACTT
s panTro5.chr6                 29970213 4 + 175400573 ACTT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30203896 4 + 173848474 ACTT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6004850 4 +   6154872 ACTT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74703001 4 + 122973662 GCTT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          59778 4 +    243043 GCTT
i macNem1.NW_012013156v1       C 0 I 277
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2761319 207 -   3067355 I
e manLeu1.NW_012107142v1          32606 281 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macFas5.chr4_KE145577_random    69968 1982 +    231697 I
e rheMac8.chr4                 30187800 30651 + 172585720 I

a score=69989.000000
s hg38.chr6_GL000254v2_alt      1007665 81 +   4827813 TCAC-GTACCTGTTTTTCTGATA-CCTCCAGAATTTCAGATATCACCATAGCTTTTGCATGTAGTCTGCCTGCACAGGGCAAT
s panTro5.chr6                 29970217 82 + 175400573 TCACAGTACCTGTTTTTCTGATA-CCCCCAGAATTTCAGATATCACCATAGCTTTTGCATGTAGTCTGCCTGCACAGGGCAAT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30203900 82 + 173848474 TCACAGTACCTGTTTTTCTGATA-CCCCCAGAATTTCAGATATCACCATAGCTTTTGCATGTAGTCTGCCTGCACAGGGCAAT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6004854 83 +   6154872 TCACAATACCTGTTTTTCTGATACCCCCCAGGATTTCAGATATCACCATAGCTTTTGCATGTAGTCTGCCTGCACAGGGCAAT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74703005 83 + 122973662 TCACAGTACCTGTTTTTCTGATGCCCCCCAGGATTTCAGATATCACCATAGTTTTTACATGTAGTCTGCCTGCACAGGGCAAT
i nomLeu3.chr1a                C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2761319 207 -   3067355 I
e manLeu1.NW_012107142v1          32606 281 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          59782 277 +    243043 I
e macFas5.chr4_KE145577_random    69968 1982 +    231697 I
e rheMac8.chr4                 30187800 30651 + 172585720 I

a score=1648710.000000
s hg38.chr6_GL000254v2_alt      1007746 960 +   4827813 AGTGTGTCTTGGTCTGCATGGCATTTTCCTCCCAGAAATTTGTGACATTCATAGCCAAAGTCTGAGCTCTGGAGGACCGGGGCACTGTCCATTACTGAGTCTCCAGGTTGGGAGAGAGGAAGAGCTTCCCATATGTGTAGAAATGCCTAAAGCCCCTGGTGCTGCTGGCTTCCTGATCTCACAAACCCTAATCTCCTGGAGGGA-ATGCAAGGCTGCCTGCCCCTACCCAGCAGT-GACTTCTCCATTCCAGTCCAAGTGAGGAACTCGGACCAGGAAGGACCCCTCCCTGGCCCTCTTCCATCCCTCCCTGTGTGG-----------------------GCTGAGCCCCGCTGAGCACCATTCCTC-ACCCCTACTCACAGCCAAATCCAGTGGGAAGAGACAGGT-CCTGCTCTCTGCCCCCAACTCTCCTGGAAAAGGCCTCTCCCATTACTCTTGCCCACTGCCCACTCTCACCTCCTTTCTGGCCCTTGATATGAGCCAGGGTCCTCCTGAGCTCCTGCCCATTCTCTGTCAAGTCTTCAGTCTCTGTGTCCCAGGTCTCAGCTCCCAGGACTGCTTCTGCCCACTGTCCCCAGGGCCCTGCCCTGCCTTT-CTGCC-TGTCACAGAGCAGGAA-----------GAGCTGACCATCCAGAT-GTCCCTCAGCGAGAAACCCTGACTGCAC------------AGATCCATCCTGGGACAGCACCGTGAGGTTGTAACAAAGACTGTGGGGCTCTGGGGAAGAGGAAATCACAGATGAAACTTCTTCCTGGAAGTAACTTCACATCAATGTTTAACACACAGGTCTGCTGTCCCGACCTTCCTGAGGAGGCAGGAAATGCACACGGGCAAAGGGACAAGAATGAGGATTTCAGACGCAAGGAAAACTGGGAAGGTGGGAGGATAGAGGAGGGGACTGAGGAACAGAAGAAGGGGGAATGGGGATGGCAAACTTGTAGGCCAGGTGCCAGGGCAGGGCAGCCACAGGCC
s panTro5.chr6                 29970299 960 + 175400573 AGTGTGTCTTGGTCTGCATGGCATTTTCCTCCCAGAAATTTGTGACATTCATAGCCAAAGTCTGAGCTCTGGAGGACCGGGGCACTGTCCATTACTGAGTCTCCAGGCTGGGAGAGAGGAAGAGCTTCCCATATGTGTAGAAATGCCTAAAGCCCCTGGTGCTGCTGGCTTCCTGATCTCACAAACCCTAATCTCCTGGAGGGA-ATGCAAGGCTGCCTGCCCCTACCCAGCAGT-GACTTCTCCATTCCAGTCCAAGTGAGGAACTCGGACCAGGAAGGACccctccctggccctcctccatccctccctGTGTGG-----------------------GCTGAGCCCCGCTGAGCACCATTCCTC-ACCCCTACTCACAGCCAAATCCAGTGGGAAGAGACAGGT-CCTGCTCTCTGCCCCCAACTCTCCTGGAAAAGGCCTCTCCCATTACTCTTGCCCACTGCCCACTCTCACCTCCTTTCTGGCCCTTGATATGAGCCAGGGTCCTCCTGAGCTCCTGCCCATTCTCTGTCAAGTCTTCAGTCTCTGTGTCCCAGGTCTCAGCTCCCAGGACTGCTTCTGCCCACTGTCCCCGGGGCCGTGCCCTGCCTTT-CTGCC-TGTCACAGAGCAGGAA-----------GAGCTGACCATCCAGAT-GTCCCTCAGCGAGAAACCCTGACTGCAC------------AGATCCATCCCGGGACAGCACCGTGAGGTTGTAACAAAGACTGTGGGGTTCTGGGGAAGAGGAAATCACAGATGAAACTTCTTCCTGGAAGTAACTTCACATCAATGTTTAACACACAGGTCTGCTGTCGCGACCTTCCTGAGGAGGCAGGAAATGCACACAGGCAAACGGACAAGAATGAGGATTTCAGACGCAAGGAAAACTGGGAAGGTGGGAGGATAGAGGAGGGGACTGAGGAACAGAAGAAGGGGGAATGGGGATGGCAAACTTGTCGGCCAGGTGCCAGGGCAGGGCAGCCACAGGCC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30203982 960 + 173848474 AGTGTGTCTTGGTCTGCATGGCATTTTCCTCCCAGAAATTTGTGACATTCATAGCCAAAGTCTGAGCTCTGGAGGACCGGGGCACTGTCCATTACTGAGTCTCCAGGTTGGGAGAGAGGAAGAGCTTCCCATATGTGTAGAAATGCTTAAAGCCCCTGGTGCTGCTGGCTTCCTGATCTCACAAACCCTAATCTCCTGGAGGGA-ATGCAAGGCTGCCTGCCCCTACCCAGCAGT-GACTTCTCCATTCCAGTCCAAGTGAGGAACTCGGACCAGGAAGGACccctccctggccctcctccatccctccctGTGTGG-----------------------GCTGAGCCCCGCTGAGCACCATTCCTC-ACCCCTACTCACAGCCAAATCCAGTGGGAAGAGACAGGT-CCTGCTCTCTGCCCCCAGCTCTCCTGGAAAAGGCCTCTCCCATTACTCTTGCCCACTGCCCACTCTCACCTCCTTTCTGGCCCTTGATATGAGCCAGGGCCCTCCTGAGCTCCTGCCCATTCTCTGTCAAGTCTTCAGTCTCTGTGTCCCAGGTCTCAGCTCCCAGGACTGCTTCTGCCCACTGTCCCCGGGGCCCTGCCCTGCCTTT-CTGCC-TGTCACAGAGCAGGAA-----------GAGCTGACCATCCAGAT-GTCCCTCAGCGAGAAACCCTGACTGCAC------------AGATCCATCCCGGGACAGCACCGTGAGGTTGTAACAAAGACTGTGGGGCTCTGGGGAAGAGGAAATCACAGATGAAACTTCTTCCTGGAAGTAACTTCACATCAATGTTTAACACACAGGTCTGCTGTCCCGACCTTCCTGAGGAGGCAGGAAATGCACACGGGCAAAGGGACAAGAATGAGGATTTCAGACGCAAGGAAAACTGGGAAGGTGGGAGGATAGAGGAGGGGACTGAGGAACAGAAGAAGGGGGAATGGGGATGGCAAACTTGTAGGCCAGGTGCCAGGGCAGGGCAGCCACAGGCC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6004937 959 +   6154872 AGTGTGTCTTGGTCTGCATGGCATCTTCCTCCCAGAAATTTGTGACGTTCATAGCCAAGGTCTGAGCTCTGGAGGACCGGGGCACTGTCCATTACTGAGTCTCCAGGTTGGGAGAGAGGAAGAGCTTCCCATATGTGTAGAAATGCCTAAAGCCCCTGGTGCTGCTGGCTTCCTGATCTCACAAACCCTAATCTCCTGGAGGGA-ATGCAAGGCTGCCTGCCCCTACCCAGCAGT-GACTTCTCCTTTCCAGTCCAAGTGAGGAACTCAGACCAGGAAGGACccctccctggccctcctccatccctccctGTGTGG-----------------------GCTGAGCCCCGCTGAGCACCATTCCTC-ACCCCTACTCACAGCCAAATCCAGTGGGAAGAGACAGGT-CCTGCTCTCTG-CCCCAACTCTCCTGGAAAAGGCCTCTCCCATTATTCTTGCCCACTGCCCACTCTCACCTCCTTTCTGGCCCTTGATATGAGCCAGGGTCCTCCTGAGCTCCTGCCCATTCTCTGTCAAGTCTTCAGTCTCTGTGTCCCAGGTCTCAGCTCCCAGGACTGCTTCTGCCCACTGTCCCCAGGGCCCTGCCCTGCCTTT-CTGCC-TGTCACAGAGTAGGAA-----------GAGCTGACCATCTAGAT-GTCCCTCAGCGAGAAACCCTGACTGCAC------------AGATCCATCCCGGGATAGCACCGTGAGGTTGTAACAAAGACTGTGGGGCTCTGGGGAAGAGGAAATCACAGATGAAACTTCTTCCTGGAAGTAACTTCACATCAATGTTTAACACACAGGTCTGCTGTCCCGACCTTCCTGAGGAGGCAGGAAATGCACACGGGCAAAGCGACAAGAATGAGGATTTCAGACGCAAGGAAAACTGGGAAGGTAGGAGGATAGAGGAGGGGACTGAGGAACAGAAGAAGGGGGAATGGGGATGGCAAACTTGTAGGCCAGGTGCCAGGGCAGGGCAGCCACAGGCC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74703088 954 + 122973662 AGTGT------GTCTGCATGGCATCTTCCTCCCAGAAATTTGTGACGTTCATAGCCAAGGTCTGAGCTCTGGAGGACCGGAGCGCTGTCCATTACTGAGTCTCCAGGTTGGGAGAGAGGAAGAGCTTCCCATATGTGTAGAAATGCCTAAAGCCCCTGGTGCTGCTGGCTTCCTGTTCTCACAAACCCTAATCTCCTGGAGGGA-ATGCAAGGCTGCCTGCCCCTACCCAGCAGT-GACTTCTCCATTCCAGCCCAAGTGAGGAACTCGAACCAGGAAGGACCCCTCCCTGGCCCTCCTCTATCCTTCCCTGCGTGG-----------------------GCTGAGCCCCGCTGAGCACCATTCCTC-ATCCCTACTCACAGCCAAATCCAGTGGGAAGAGACAGGT-CCTGCTCTCTGCCCCCAACTCTCCTGGAAAAGGCCTCTCCCATCACTCTTGCCCACTGCTCACTCTCACCTCCTTTCTGGCCCTTGATATGAGCCAGGGTCCTCCTGAGCTCCTGCCCATTCTCTGTCAAGTCTTCAGTCTCTGTGTCCCAGGTCTCAGCTCCCAGGACTGCTTCTGCCCACTGTCCCCGGGGCCCTGCCCTGCCTTT-CTGCC-TGTCACAGAGCAGGAA-----------GAGCTGACCATCCAGAT-GTCCCTCAGCGAGAAACCCTGACTGCAC------------ATATCCATCCTGGGACAGCACCTTGAGGTTGTAACGAAGACTGTGGGGCTCTGGGGAAGAGGAAATCACAGATGAAACTTCTTTCTGGAAATAACTTCACATCAATGTTTAACACACAGGTCTGCTGTCTGGGCCTTCCTGAGGAGGCAAGAAATGCACACGGGCAAAGGGACAAGAATGAGGATTTCAGATGCAAGGAAAACTGGGAAGGTGGGAGGATAGAGGAGGGGACTGAGGAACAGAAGAAGGGGGAATGGGGATGGCAAACTTGTAGGCCAGGTGCCAGGGCAGGGCAGCCACATGTC
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          60059 987 +    243043 AGTGGGTCTTGGCCTGCATAGCATCTTCCTTCTAGATATTTGTGATGTTCATAGCAGAGGTCTGAGCTCTGGAGGACTGGGATACTGTCCATTCCTGAGTCTCCAGGTTGAGAGAGAGGAAGAGCTACCC------------ATGCCTTAAACCCCTGGTGCTGCGTGCTTCCTGATCTCACAAACCCTAATCTCCTGGAGGGAGATGCAA----GTCTACCCCCACCCAGCAGTGGACTTCTCCATTCCAGTCCAAGTGAGGAACTCAGACCAGAGGGGACCCCTTGCTGGCCCTCCTCCATGCCTTTCGTGGTGG--TGAGTGCCGGCTCACCTCCCCGCTGAGCTCCGCTGACTCCCATTCCTCAACCCCTACCCCCAGCCAGATCCAGTGGGAACAGACAGGTCCCTGCTCTCTGCCCCCAGCTCTCCTGGAAAAGGCCTCTCCCATCACTCTTGCCCGCTTGCTACTCTCACCTCC-TTCTGGCCCTTGATATGTG-CAGGGCCCTTCTGGG-----GCCCGTTCTCTGTcaagtcctcagtctctgtgtcccaggtctcagctcccagAACCCTTCCACTCCACTGTCCCTGGGACCCAGCCCTGCTTTTGCTGCCTTGTTGAAGAGCAGGAAGAGTGTCCCTGGATCTGACCATCCAGATGGTCCCTCAGCGAGAAACCCTGACTGCAAGATCCATTCCGGGGACCCATCCCGGGACAGCACTGTGAGGTTGTAATGAAGACTGTGGGGCCCTGGGGAAGAGGAAACCACAGATGAAACTTCTTCCTGGAAGCAACTTTATATTGAAG-TTAACACACAGGTCTGAGGTCCCAACCTTCCTGAGGAGGCAGGAAATGCACACAGGCAAAGGGACAAGAATGAGGATTTTAGATACAAGGAAAACTGGGAGGGCAGGAGAATGGAGGAGTGGACTGAGGAACGGAAGATGGGGGAATGGAGATGGCAAACATGTAGGCCAGGTGCCAAGGCGGGGCAGCCACAGGCC
i macNem1.NW_012013156v1       I 277 I 1751
s manLeu1.NW_012107142v1          32887 979 -    735854 AGTGTGTCTTGGCCTGCATAGCATCTTCCTTCTAGATATTTGTGATGTTCAGAGCAGAGGTCTGAGCTCTGGAGGACTGGGATACTGTCCATTCCTGAGTCTCCAGGTTGAGAGAGAGGAAGAGCTACCCATAAGAGTAGGAATGCCTAAAGCCCCTGGTGCTGCTGGCTTCCTGATCTCACAAACCCTAATCTCCTGGAGGGA-ATGTAA----GTCTACACCCACCCAGCAGT-GACTTCTCCATTCCAGTCCAAGTGAGGAACTCAGACCACAGGGGACCCCTTGCTGGCCCTCCTCCATGCCTTTCTGTGTGGGCTGAGTGCCGGCTCACCTCCCTGCTGAGCTCCGCTGACCCCCATTCCTC-ACCCCTACCACCAGCCAGATCCAGAGGGAACAGACAGGTCCCTGCTCTCTGCTCCCAGCTCTTCTGGAAAAGGCCTCTCCCATCACTTTTGCCCGCTGCCTACTCTCACCTCCTTTCTGGCCCTTGATATATGCCAGGGCCCTTCTGAGGTCCTGCCCGTTCTCTGTCAAGTCCTCAGTCTCTGTGTCCCAGATCTCAGCTCCCAGAACCACTTCTGCCCACTGTCCCCGGGACCCAGCCCTGCCTGT-CTGCC-TGTTGAAGAGCAGGAA-----------GGTCTGACCATCCAGAT-GTCCCTCAGCGAGAAACCCTGACTGCAC------------AGATCCATCCCGGGACAGCACTGTGAGGTTGTAATGAAGACTGTGGGGCCCTGGGGAAGAGGAAACCACAGATGAAACTTCTTCCTGGAAGCAACTTTACATCAAAG-TTAACACACGGGTCTGCGGTCCCGACCTTCCTGAGGAGGCACGAAATGCACACAGGCAAAGGGACAAGAATGAGGATTTTAGATACAAGGAAAACTGGGAGGGCAggaggatggaggagtggactgaggaacggaagatgggggaatggggatggCAAACATGGAGGCCAGGTGCCAAGGCGGGGCAGCCACAGGCC
i manLeu1.NW_012107142v1       I 281 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2761319 207 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macFas5.chr4_KE145577_random    69968 1982 +    231697 I
e rheMac8.chr4                 30187800 30651 + 172585720 I

a score=298972.000000
s hg38.chr6_GL000254v2_alt      1008706 237 +   4827813 CCCTCAGGGTATAGGGAGGAGGCCAATGGAAGGGGCTGCCCTGCAGGTTCAAGGGAGGAGCATGAAGGCAGTGGTGGAAGGAAGGTCTTGCCAGAGGGGAGAGCAGAAACTGTAAGGGACCCAGGCTCAGAGGGACCCATGACCACCATGGCTGTGGTGCACAGGTGAGGGTGAGATGGAGGCAAGGTCCACTGCCTTTGAGGAAGGCTCAACATGGACAAGGTGGGGGCAAGGGAG
s panTro5.chr6                 29971259 236 + 175400573 CCCTCAGGGGGTAGGGAGGAGGCCAATGGAAGGGGCTGCCCTGCAGGTTCAAGGGAGGAGTATGAAGGCAGTGGTGGAAGGAAGGTCTTGCCAGAGGGGAGAGCAGAAACTGTAAGGGACCCAGGCTCAGAGGGACCCATGACCACCATGGCTGTGGTGCACAGGTGAGGGTGAGATGGAGGCAAGGTCCACTGCCTTTGAGGAAGGCTCAACATGGACAAGGT-GGGGCAAGGGAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30204942 237 + 173848474 CCCTCAGGGTATAGGGAGGAGGCCAATGGAAGGGGCTGCCCTGCAGGTTCAAGGGAAGAGTATGAAGGCAGTGGTGGAAGGAAGGTCTTGCCAGAGGGGAGAGCAGAAACTGTAAGGGACCCAGGCTCAGAGGGACCCATGACCACCATGGCTGTGGTGCACAGGTGAGGGTGAGATGGAGGCAAGGTCCACTGCCTTTGAGGAAGGCTCAACATGGACAAGGTGGGGGCAAGGGAG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6005896 236 +   6154872 CCCTCAGGGTATAGGGAGGAGGCCAATGGAAGGGGCTGCCCTGCAGGTTCAAGGGAGGAGCATGAAGGCAGTGGTGGAAGGAAGGTCTTG-CAGAGGGGAGAGCAGAAACTGTAAGGGACCCAGGCTCAGAGGGACCCATGACCACCGTGGCTGTGGTGCACAGGTGAGGGTGAGATGGAGGCAAGGGCCACTGCCTTTGAGGAAGGCTCAACATGGACAAGGTGGGGGCAAGGGAG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74704042 237 + 122973662 GCCTCAGGGTATAGGGAAGAGGCCAATAGAAGGCGCTGCCCTGCAGGTTCAAGTGAGGAGCATGAAGGCAGTGGTGGAAGGAAGGTCTTGCCAGAGAGGAGAGCAGAAACTGTAAGGGACTCAGGCTCAGAGGGACCCATGACCACCGTGGCTGTGGTGCACAGGTGAGGATGAGATGGAGGCAAGGGCCACTGCCTTTGAGGAAGGCTCAACGTGGACAAGGTGGGGGCAAGGGAG
i nomLeu3.chr1a                C 0 C 0
s manLeu1.NW_012107142v1          33866 237 -    735854 ACCTAAGGGTATAGGGAGGAGGCCAAGGAGAGAGGCTGCCCTGCAGTGGTGAGGGAGGAGCATGAAGGCAGTGGTGGAAGGAAGGTCTTGCCAGAGAAGAGGGTGGAAATGGGAAGGGACCCAGGCTCAGGGTGACCCATGACCAGCATGGCTGTGCTGCACAGGTGAGGGTGAGATGGAGTTGAGGGCCGCTGCCTTTGAGGAAGGCTCATTGTGGACAAGGTGGGAGTAAGGGAG
i manLeu1.NW_012107142v1       C 0 I 1376
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2761319 207 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          61046 1751 +    243043 I
e macFas5.chr4_KE145577_random    69968 1982 +    231697 I
e rheMac8.chr4                 30187800 30651 + 172585720 I

a score=282437.000000
s hg38.chr6_GL000254v2_alt      1008943 319 +   4827813 ACTTGGCTGTGAGGCAGGAGGGGCAGGTAGGCTGTGGTGCCAGAGACGTTTTCTACGAGGTCCGTATCCCAGGGAGAAGCAATGGTGTGGGCTTCAGAGTGGCATGGCAATGCCCCAAGTAGGGAGGTGGATGGACCAGTTGGTGTCCCCTGGGGTGGGCTGGTGGCAAGGGTCTTAAAGAGTCAGTGCAtcttttcaacaaatggtgctaggaaaaccagatgttcacatgcc---------aaaaaaaaaaaaaaatgaagttggatccctaacttacaccacatatgaaaattaactaagaaaaacatcaaagacctaaactcaa
s panTro5.chr6                 29971495 321 + 175400573 ACTTGGCTGTGAGGCAGGAGGGGCAGGTAGGCTGTGGTGCCAGAGACGTTTTCTACGAGGTCTGTATCCCAGGGAGAAGCAATGGTGTAGGCTTCAGAGTGGCATGGCAATGCCCCAAGTAGGGAGGTGGATGGACCAGTTGGTGTCCCCTGGGGTGGGCTGGTGGCAAGGGTCTTAAAGAGTCAGTGCAtcttttcaacaaatggtgctaggaaaaccagatgttcacatgcc-------aaaaaaaaaaaaaaaaatgaagttggatccctaacttacaccacatatgaaaattaactaagaaaaacatcaaagacctaaactcaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30205179 317 + 173848474 ACTTGGCTGTGAGGCAGGAGGGGCAGGTAGGCTGTGGTGCCAGAGATGTTTTCTACGAGGTCCGTATCCCAGGGAGAAGCAATGGTGTGGGCTTCAGAGTGGCATGGCAATGCCCCAAGTAGGGAGGTGGATGGACCAGTTGGTGTCCCCTGGGGTGGGCTGGTGGCAAGGGTCTTAAAGAGTCAGTGCACcttttcaacaaatggtgctaggaaaaccagatgttcacatgcc-----------aaaaaaaaaaaaatgaagttggatccctaacttacaccacatatgaaaattaactaagaaaaacatcaaagacctaaactcaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6006132 328 +   6154872 ACTTGGCTGTGAGGCAGGAGGGGCAGGTAGGCTGTGGTGCCAGAGACGTTTTCTACGAGGTCCGTATTCCAGGGAGAAGCAATGGTGTGGGCTTCAGAGTATCATGGCAATGCCCCAGGTAGGGAGGTGGATGGACCAGTTGGTGTCCCCTGGGGTGGGCTGGTGGCAAGGGTCTTAAAGAGTCAGTGCAtcttttcaacacatggtgctaggaaaactagatgttcacatgcaaaaaaaaaaaaaaaaaaaaaaaaatgaagttggatccctaacttacaccacatatgaaaattaactaagaaaaacatcaaagacctaaactcaa
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74704279 322 + 122973662 ACTTGGCTGTGAGGCAGGAGCAGCAGGTAGGCTGTGGTGCCAGAGACGTTTTCTACGAAGTCTGTATCCCAGGGAGAAGCAATAGTGTGGGCTTCAGAGTGGCATGGCAAGGCCCCAGGTAGGGAGGTGGATGGACCAGTTGGTATCCCTTGGGGTGGGCAGGTGGCAGGGGTCTCAAAGAGTCAGTGTAtcttttcaacaaatggtgctaggaaaactagatgttcacatgca------aaaaaaaaaaaaaaaaaaagaagttggatccctaacttacaccacatataaaaattaactaagaaaaacatcaaagacctaaaCTCAA
i nomLeu3.chr1a                C 0 I 1215
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2761319 207 -   3067355 I
e manLeu1.NW_012107142v1          34103 1376 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          61046 1751 +    243043 I
e macFas5.chr4_KE145577_random    69968 1982 +    231697 I
e rheMac8.chr4                 30187800 30651 + 172585720 I

a score=492730.000000
s hg38.chr6_GL000254v2_alt      1009262 938 +   4827813 gaactaaaactgaaaaactcttacaataaaacatagggaattatcttcatgccatagaatttgatagcactttcttggatataacaccaaagatacaacaacaaagaaaaaattgataaattggactcatcaaaat-aaaaaagttcattaaaaacacaataaacacagtgaaaaagcaacccccagaatgaaagaaaatatttgcaaatcatatatatctgataagagattaatatccagaatacataaagaactcctacaactcaaacaggagacattcaactaatacaaaagtaggcaaaggacttgcatagccaattccccaaacaagatgtacaaatggccaacagacacatgaaaagatgctcagcatcagcagtcattagggaaatgcaaatcaaaaccacaatgaactattactttacaccaattagtttggctattatcaaacacacacacacacacacacacacacacacacacacacacacacacagaaatatcaagtttggcaaacaggttgcgaaactggaacctttgtgtaatgcatttggaaatacaaaatagggcacctgttatggaaaacagtgtgttgattcctccaaaaattaaaaaatgaattaccagctaggtgtggtggctcacgcctgtaatcccagcacttcgggaggcttaggcaggcagatcacgaggtcaggagattgagaccatcccggtcaacatggtgaaacccagtctctattaaaatacaaaatattagccgggtgtggtggtgggcacttgtaatcccagctacttaggaggctaaggcaggggaatcacttgaatccgggaggcggagcttgcagtgagccga-gaccgcgccactgcactccaactttggcgacagagggaggcgccgtct--------aaaaaaaaaaaaaaaagaaGCAGTTGGACACACG
s panTro5.chr6                 29971816 932 + 175400573 gaactaaaactgaaaaactcttacaataaaacatagggaattatcttcatgccatagaatttgatagcactttcttggatataacaccaaagatacaacaacaaagaaaaaattgataaattggactcatcaaaat-aaaaaagttcattaaaaacacaataaacacagtgaaaaagcaacccccagaatgaaagaaaatatttgcaaatcatatatatctgataagagattaatatccagaatacataaagaactcctacaactcaaacaggagacattcaactaatacaaaagtaggcaaaggacttgcatagccaattccccaaacaagatgtacaaatggccaacagacacatgaaaagatgctcagcatcagcagtcattagggaaatgcaaatcaaaaccacaatgaactattactttacaccaattagtttggctattatcaa------------acacacacacacacacacacacacacacacacacagaaatatcaagtttggcaaacaggttgcgaaactggaacctttgtgtaatgcatttgaaaatacaaaatagggcacctgttatggaaaacagtgtgttgattcctccaaaaattaaaaaatgaattaccagctaggtgtggtggctcacgcctgtaatcccagcactttgggaggcttaggcaggcagatcacgaggtcaggagattgagaccatcccggtcaacatggtgaaacccagtctctattaaaatacaaaatattagccgggtgtggtggtgggcacttgtaatcccagctacttaggaggctaaggcaggggaatcacttgaatccgggaggc-gagcttgcagtgagccggcgaccgcgccactgcactcca--tttggcgacagtgggaggcgccgtctcaaaaaaaaaaaaaaaaaaaagaagaaGCAGTTGGACACACG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30205496 924 + 173848474 gaactaaaactgaaaaactcttacaataaaacatagggaattatcttcatgccatagaatttgatagcactttcttggatataacaccaaagatacaacaacaaagaaaaaattgataaattggactcatcaaaat-aaaaaagttcattaaaaacacaataaacacagtgaaaaagcaacccccagaatgaaagaaaa-atttgcaaatcatatatatctgataagagattaatatccagaatacataaagaactcctacaactcaaacaggagacattcaactaatacaaaagtaggcaaaggacttgca-agccaattccccaaacaagatgtacaaatggccaacagacacatgaaaagatgctcagcatcagcagtcattagggaaatgcaaatcaaaaccacaatgaactattactttacaccaattagtttggctattatcaa----------------acacacacacacacacacacacacatacacagaaatatcaagtttggcaaacaggttgcgaaactggaacctttgtgtaatgcatttggaaatacaaaatagggcacctgttatggaaaacagtgtgttgattcctccaaaaattaaaaaatgaattaccagctaggtgtggtggctcacgcctgtaatcccagcactttgggaggcttaggcaggcagatcacgaggtcaagagattgagaccatcccggtcaacatggtgaaacccagtctctattaaaatacaaaatattagccgggtgtggtggtgggcacttgtaatcccagctacttaggaggctaaggcaggggaatcacttgaatccgggaggcggagcttgcagtgagccga-gaccgcgccactgcactccaactttggcgacagagggaggcgccgtctcaaa----aaaaaaaaaagaagaagaaGCAGTTGGACACACG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6006460 919 +   6154872 gaactaaaactgaaaaactcttacaataaaacatagggaataatcttcatgccatagaatttgatagcactttcttggatataacaccaaagatacaacaacaaagaaaaaattgataaattggactcatcaaaataaaaaaagttcattaaaaacacaataaacacagtgaaaaagcaacccccagaatgaaagaaaatatttgcaaatcatatatatctgataagagattaatatccagaatacataaagaactcctacaactcaaacaggagacattcaactaatacaaaagtaggcaaaggacttgcatag-caattccccaaacaagatgtacaaatggccaacagacacatgaaaagatgctcagcatcagcagtcattagggaaatgcaaatcaaaaccacaatgaactattactttacaccaattagtttggctattatcaa------------------------acccacacacacgcacacacacagaaatatcaagtttggcaaagaggttgcgaaactggaacc-ttgtgtaatgcatttggaaatacaaaatagggcacctgctatggaaaacagtgtgttgattcctccaaaaattaaaaaatgaattaccagctaggtgtggtggctcacgcctgtaatcccagcactttgggaggcttaggcaggcagatcacgaggtcaggagatcgagaccatcccggtcaacatggtgaaactcagtctctattaaaatacaaaaaattagccgggtgtggtggtgggcacttgtaatcccagctacttaggaggctaaggcaggggaatcacttgaacccgggaggcggagcttgcagtgagccga-gacggcgccactgcgctccaactttggtgacagagggagacgccgtctcaaaaa--aaaaaaaaaagaagaagaaGCAGTTGGACACACG
i gorGor5.CYUI01015250v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2761319 207 -   3067355 I
e manLeu1.NW_012107142v1          34103 1376 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          61046 1751 +    243043 I
e macFas5.chr4_KE145577_random    69968 1982 +    231697 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=667158.000000
s hg38.chr6_GL000254v2_alt      1010200 542 +   4827813 GCCTGTGTTGGGTCTGGGT----AGAGGAGGACAGATGTGCAGGGCAAGGACTGGAGGATGGGGTGAGCATGGTGTGGGGGTGAACCTGGGGGAACTTTGGTTAGGGTGAGGACAGGAGGGGA-GGGTGCTCTGAGTGAGGGTGGGGCTTGGGAAAGATGAGAACTTGCTGAGGGCCCAAGGCAGCTGGGCAAGAGGTAGGAGCAGCACAAGGTCCCAAGGCGGAGAGGGGCGGAGGGACCAGGGAGGGATGGTCCAGCACCCGTGGGCTGGAGTGGGGGGTCCTCAAGAGGGTGGGGCTGAGGATGAAGGAGTAGGGAAGGGGCCACCGTGAGGCAGGGCCCAGAGCAGGCACCTGCACTAGAGGGGAGGGGGCATCTGCCCTGCCCTGTGCCCTGCCTAAGGCCCAACCAACATTAGCACTAGGGCTCCCCTTGGGTGGTCTAGAGGGGAGTGGGACGGAGGGAAGACCCTGGGACAAAAGGCGGCACCAGAGAGTTAGGGTCAGGGAGAGTTGGG-AGTGGGAGGCATAGGGGCAGCCCTGGGTT
s panTro5.chr6                 29972748 546 + 175400573 GCCTGTGTTGGGTCTGGGTAGAGAGAGGAGGACAGATGTGCAGGGCAAGGACTGGAGGATGGGGTGAGCACGGTGTGGGGGTGACCCTGGGGGAACTTTGGTTAGGGTGAGGACAGGAGGGGA-GGGTGCTCTGAGTGAGGGTGGGGCTTGGGAAAGATGAGAACTTGCTGAGGGTCCAAGGCAGCTGGGCAAGAGGTAGGAGCAGCACAAGGTCCCAAGGCGGAGAGGGGCGGAGGGACCAGGGAGGGATGGTCCAGCACCCGTGGGCTGGAGTGGGGGGTCCTCAAGAGGGTGGGGCTGAGGATGAAGGAGTGGGTAAGGGGCCACCGTGAGGCAGGGCCCAGAGCAGGCACCTGCACTAGAGGCGAGGGGGCATCTGCCCTGCCCTGTGCCCTGCCTAAGGCCCAACTAACATTAGCACTAGGGCTCCCCTTGGGTGGTCTAGAGGGGAGTGGGACGGAGGGAAGACCCTGGGACAAAAGGCAGCACCAGAGAGTTAGGGTCAGGGAGAGTTGGG-AGTGGGAGGCATAGGGGCAGCCCTGGGTT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30206420 542 + 173848474 GCCTGTGTTGGGTCTGGGT----AGAGGAGGACAGATGTGCAGGGCAAGGACTGGAGGATGGGGTGAGCATGGTGTGGGGGTGACCCTGGGGGAACTTTGGTTAGGGTGAGGACAGGAGGGGA-GGGTGCTCTGAGTGAGGGTGGGGCTTGGGAAAGATGAGAACTTGCTGAGGGTCCAAGGCAGCTGGGCAAGAGGTAGGAGCAGCACAAGGTCCCAAGGCGGAGAGGGGCGGAGGGACCAGGGAGGGATGGTCCAGCACCCGTGGGCTGGAGTGGGGGGTCCTCAAGAGGGTGGGGCTGAGGATGAAGGAGTGGGTAAGGGGCCACCGTGAGGCAGGGCCCAGAGCAGGCACCTGCACTAGAGGGGAGGGGGCATCTGCCCTGCCCTGTGCCCTGCCTAAGGCCCAACTAACATTAGCACTAGGGCTCCCCTTGGGTGGTCTAGAGGGGAGTGGGACGGAGGGAAGACCCTGGGACAAAAGGCAGCACCAGAGAGTTAGGGTCAGGGAGAGTTGGG-AGTGGGAGGCATAGGGGCAGCCCTGGGTT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6007379 541 +   6154872 GCCTGTGTTGGGTCTGGGT----AGAGGAGGAGAGATGTGCAGGGCAAGGACTGGAGGATGGGGTGAGCATGGTGTGGGGGTGACCCTGGGGGAACTTTGGTTAGGGTGAGGACAGGAGGGGA-GGGTGCTCTGAGTGAGGGTGGGGCTTGGGAAAGATGAGAACTTGCTGAGGGTCCAAGGCAGCTGGGCAAGGGGTAGGAGCAGCACAAGGTCCCAAGGCGGAGA-GGGCGGAGGGACCAGGGAGGGATGGTCCAGCACCCGTGGGCTGGAGTGGGGGGTCCTCAAGAGGGTGGGGCTGAGGATGAAGGAGTGGGAAAGGGGCCACCGTGAGGCAGGGCCCAGAGCAGGCACCTGCACTAGAGGGGAGGGGGCATCTGCCCTGCCCTGTGCCCTGCCTAAGGCCCAACTAACATTAGCACTAGGGCTCCCCTTGGGTGGTCTAGAGGGGAGTGGGATGGAGGGAAGACCCTGGGACAAAAGGCGGCACCAGAGAGTTAGGGTCAGGGAGAGTTGGG-AGTGGGTGGCATAGGGCCAGCCCTGGGTT
i gorGor5.CYUI01015250v1       C 0 C 0
s macNem1.NW_012013156v1          62797 540 +    243043 GCCTGTGTTGGGTCTGGGT----GGAGGTGAGGAGATGGGCAGGGCAAAGACTAAAGGATGGCATGAGCATGGAGTGGGGGTGACCCTGGGAGGACTTGGGGTAAAGTGAGAACAGAAAGGGAGGGGTACTGTGGG-GAGGGTGGGGTTTGGGGAAGGTGAGAACTTGCTGAGGGCCCAAGGCAGCTGGGCAAGAGGTGGGAGCAGCACAAGGTCCCAAGGCGGAGAGGGGCAGAGGGACCAGGGAGCGATGGTCCGGCACCTGTGTGCTGCAGGGTGGGGTCCTCAAGAGGGTGAGGCTGAGGAT---GGAGTGGGGAAGGGGCCACCGTGAGGCAGGGCCCAGAGCAGGCACCTGCACTGGAGGGGAGGAAGCATATGTGCTGCCCTGTGCCCTGCCTAAGGCCCAACTTTCATTAGCACCAGGGCTCCCCTCAAGTGGCCTGGAGGAAAGTGGGATGGAGGGAAGACCACGGGACAAAAGGCAGCACCAGAAAGTTAGGGTCAGGGACAGTTGGGAAGGGGGAGGCATAGGGGCAGCACTGGGTG
i macNem1.NW_012013156v1       I 1751 C 0
s manLeu1.NW_012107142v1          35479 539 -    735854 GCCTGTGTTGGGTCTGGGT----GGGGGTGAGGAGATGGGCAGGGCAAAGACTAAAGGATGGCATGAGCATGGAGTGGGGGTGACCCTGGGAGAACTTGGGGTAAAGTAAGAACAGGAAGGGAGGGGTTCTGTGGG-GAGGGTGGGGTTTGGGGAAGGTGAGAACTTGCTGAGGGCCCAAGGCAGCTCGGCAAGAGGTGGGAGCAGCACAATGTCCCAAGACGGAGAGGGGCAGAGGGACCAGGGAGCGATGGTCCAGCACCTGTATGCTGAGGGGTGGGGTCCTCAAGAGGGTGAGGCTGAGGAT---GGAGTGGGGAAGGGGCCACCCTGAGGCAGGGCCCAGAGCAGGCACCTGCACTGGAGGGGAGGAAGCATCTGTGCTGCCCTGTGCCCTGCCTAAGGCCCAACTTTCATTAGCACCAGGGCTCCCCTCAAGTGGCCTGGAGGGAAGTGGGATGGAGGGAAGACCACGGGACAAAAGGCAGCACCAGAAAGTTAGGGTCAGGGACAGTTGGGAAGGGGGAGGCATA-GGGCAGCACTGGGTG
i manLeu1.NW_012107142v1       I 1376 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2761319 207 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macFas5.chr4_KE145577_random    69968 1982 +    231697 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=951389.000000
s hg38.chr6_GL000254v2_alt      1010742 599 +   4827813 AAGGCTGCTTCTAGGAAAGGCCCATAAGGGAGGCAGGAGGGACCTGCGGTGGCGGGGGCAGGGGATGA-GGCAGAGGACATCCTAGAAATGTATCAGAGAACTGCAGATAGGAAGGGGTAACAGGGAGCTGGGAGGGCAACAGGACCCAAGGTGCCCTGAG---GGCAGGGGAGGAGGTGGGAGGGAATCTGGTGTCCTTAGATCACTGGAGTTAATAGTAGCAGGGAAGGATGCAAGACAAGAGAGGATCCCCGGCAGCGGGAGGCCAGGGGAGAATGAGCTGGGGATGAGAGAAGTCGCAGGAAGAATCCTCTGCCCGGAGCCTGCAGACTCCAACCCCTCAGCGTGAGGGTCAGGAG---CCCCACAGTCCCCACAGCAGCAGGAAGCACTAGCTCCGGGT-CCCGAGAAAGGAGGGCCCCAACTCCAGGAGATG----CGGCCCAGGAGCTGAGAAC-ACGTCGGCTCC-GGGAGAGGACAGGGCTTCAGGGACCTTAGGGCCGCCCCCAGCACCGGGGGAGGTGGCTGCCTCAGCGGCCGCGCTGGAAGGGCCCTCGAATGCCATTCACAGGA------------GCAGCCCAGGAACCCAGGGGCCTCAGAAAGACTGG
s panTro5.chr6                 29973294 600 + 175400573 AAGGCTGCTTGTAGGAAAGGCCCATAAGGGAGGCAGGAGGGACCTGCGGTGGCGGGGGCAGGGGATGAGGGCAGAGGACATCCTAGAAATGTATCACAGAACTGCAGATAGGAAGGGGTAACAGGGAGCTGGGAGGGCAACAGGACCCAAGGTGCCCTGAG---GGCAGGGGAGGAGGTGGGAGGGAATCTGGTGTCCTTAGATCACTGGAGTTAATAGTAGCAGGGAAGGATGCAAGATAAGAGAGGATCCCCGGGAGCGGGAGGCCAGGGGAGAATGAGCTGGGGATGAGAGAAGTCGCAGGAAGAATCCTCTGCCCGGAGCCTGCAGACTCCAACCCCTCAGCGTGAGGGTCAGGAG---CCCCACAGTCCCCACAGCAGCAGGAAGCACCAGCTCCGGGT-CCCGAGAAAGGAGGGCCCCAACTCCAGGAGATG----CGGCCCAGGAGCTGAGAAC-ACGTCGGCTCC-GGGAGAGGACAGGGCTTCAGGGACCTTAGGGCCGCCCCCAGCACCGGGGGAGGTGGCTGCCTCAGCGGCCGCGCTGGAAGGGCCCTCGAATGCCATTCACAGGA------------GCAGCCCGGGAACCCAGGGGCCTCAGAAAGACGGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30206962 600 + 173848474 AAGGCTGCTTGTAGGAAAGGCCCATAAGGGAGGCAGGAGGGACCTGCGGTGGCGGGGGCAGGGGATGAGGGCAGAGGACATCCTAGAAATGTATCACAGAACTGCAGATAGGAAGGGGTAACAGGGAGCTGGGAGGGCAACAGGACCCAAGGTGCCCTGAG---GGCAGGGGAGGAGGTGGGAGGGAATCTGGTGTCCTTAGATCACTGGAGTTAATAGTAGCAGGGAAGGATGCAAGATAAGAGAGGATCCCCGGGAGCGGGAGGCCAGGGGAGAATGAGCTGGGGATGAGAGAAGTCGCAGGAAGAATCCTCTGCCCGGAGCCTGCAGACTCCAACCCCTCAGCGTGAGGGTCAGGAG---CCCCACAGTCCCCACAGCAGCAGGAAGCACCAGCTCCGGGT-CCCGAGAAAGGAGGGCCCCAACTCCAGGAGATG----CGGCCCAGGAGCTGAGAAC-ACGTCGGCTCC-GGGAGAGGACAGGGCTTCAGGGACCTTAGGGCCGCCCCCAGCACCGGGGGAGGTGGCTGCCTCAGCGGCCGCGCTGGAAGGGCCCTCGAATGCCATTCACAGGA------------GCAGCCCGGGAACCCAGGGGCCTCAGAAAGACGGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6007920 600 +   6154872 AAGGCTGCTTGTAGGAAAGGCCCATAAGGGAGGCAGGAGGGACCTGCGGTGGCGGGGGCAGGGGATGAGGGCAGAAGACATCCTAGAAATGTATCAGAGAACTGCAGATAGGAAGGGGTAACAGGGAGCTGGGAGGGCAACAGGACCCTAGGTGCCCTGAG---GGCAGGGGAGGAGGTGGGAGGGAATCTGGTGTCCTTACATCACTGGAGTTAATAGTAGCAGGGAAGGATGCAAGACAAGAGAGGATCCCCGGGAGCAGGAGGCCAGGGGAGAATGAGCTGGGGATGAGAGAAGTCGCAGGAAGAATCCTTTGCCTGGAGCCTGCAGACTCCAACCCCTCAGCGTGAGGGTCAGGAG---CCCCACAGTCCCCACAGCAGCAGGAAGCACCAGCTCCGGGT-CCCGAGAAAGGAGGGCCTCAACTCCAGGAGATG----CGGCCCAGGAGCTGAGAAC-ACGTCGGCTCC-GGGAGAGGACAGGGCTTCAGGGACCTTAGGGCCGCCCCCAGCACCGGGGGAGGTGACTGCCTCAGCGGCCGCGCTGGAAGGGCCCTCGAATGCCATTCACAGGA------------GCAGCCTGGGAACCCAGGGGCCTCAGAAAGACAGG
i gorGor5.CYUI01015250v1       C 0 C 0
s macNem1.NW_012013156v1          63337 607 +    243043 AAGGCTGCTTGTAGGAATGGCCCATAAGGGAGGCAAGAGGGACCTGCGGTGGC-AGGGCAGGGAATGAGGGCAGAGGATATCCTACAAATAGATCAGAGAACTGCAGACAGAAAGGGGTAGCAGGAAGCAGGGAGGACAACAGGACCCAGGGGGCCCTGAGATAGGACAGGGAGGAGGTTGGAGGGAACCTGGTGTCCTTAGATCATTGGAGTCCACAGTAGCCGGGAAGGTTGCCAGAGAGGAAAGAA-CCCTGGGAAGGGCCGGCCAGGGGAGAATGAGCTGGGGATGGGCGAAGTCGCATGAAGAATCCTCTGCCCGGAGCCTGCAGACTCCAACCCCTCAGCTTGAGAGTCAGGAG---CCCCACAGTCCCCACAGCAACGGGAAGCACCAGCTCCTGGTCCCGAAAAAAGGAGGGCCCCAACTCCAGGAACTGCGGCCCGCCCGGGAGCTGAGAAC-ACGCGGACTCTAGGGAAAGGACAGGGCTTCAGGGACCCGAAAGTCGCTCCAAGCACCCGGAAATGTGGCTGCCTCTGCGGCAGAGCTGGAAGGGCCCTCGAATGCCAATCACAGGA------------ACAGCCCGGGGACCCAGGGACATCAGAAGGACTGG
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          36018 606 -    735854 AAGGCTGCTTGTAGGAATGGCCCATAAGCGAGGCAAGAGGGACCTGCCGTGGC-AGGGCAGGGAATGAAAGCAAAGGATATCCTACAAATAGATCAGAGAACTGCAGACAGAAAGGGGCAGCAGGAAGCAGGGAGGACAACAGGACCCAGGGGGCCCTGAGATGGGACAGGGAGGAGGTTGGAGGGAACCTGGTGTCCTTAGATCATTGGAGTCCACAGCAGCGGGGAGGGCTGCCAGAGAGGAAAGAA-CCCTGGGAAGGGCCGGCCAGGGGAGAATGAGCTGGGGATGGGAGAAGTCGCATGAAGAATCCTCTGCCCGGAGCCTGCAGACTCCAACCCCTCAGCTTGAGAGTCAGGAG---CCCCACAGTCCCCACAGCAACAGGAAGCACCAGCTCCTGGTCCCGAAAAAAGGAGGGCTCCAACTCCAGGGACTTCGGCCCGCCTGGGAGCTGAGAAC-ACGCGGACTCTAGGGAAAGGACAGGGCTTCAGGGACCCGAAAGTCGCTCCGAGCACCGGGAAATGTGGCTGCCTCAGCGGCAGAGCTGGAAGGGCCCTCGAATGCCATTCACAGGA------------ACAGCCCGGGGACCCAGGGACGTCAGAAGGGCT-G
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2761526 609 -   3067355 AAGACTGCTTGTAGGAAAGGCCCATAAGGGAGACAGGAGGGCCCTGCAGTGGTGAGGACAGGGGATAAGGGCAGAGGACACCCTAAAAATGAATCAGAGAACTGCAGACAGGAAGGAATAGCAGAAAGTAGGGAAAGCAATAGGACCCAGGGGGCCCTGAGGTGGCCAGGGGAGGAGATGGGAGGGAATCTGGTGTCCTTTGATCATTGGAGTCAATAGTAGTGGTGAGGGATGAGAGAGAGGAGAGGACCCCCGGGAGCGGGAGGCTAGGGGAGAATGAGCTGGGGTTGAGAGAAGTCGCAGGAAGAATCCTCTGCCCAGAACCTACAGACTCCAACCTCTCAGAGTGAGAGTCAGGAGGACCCCCACAGTCCTCACAACAGCAGGAAGCCCAAGCTCCTAAT-CCGGAGAAAGGAGGGCCCCAACTCCAGGGACT-----CGGCCCAGGAGCTGAGAACTGCTCGGCTCCT--GGAGAGGACAGGGTTTCAGGGACCTGAAGGCCGCCCCAAGCACAGGCGGAAGTGGCTGCCTC--------AGCCGGAAGAGCCCTCGAATGCCATTCACAGGAGCAGCCCGAGAGGCAGCCCGGGAACCCACGGAGTTCAGAAGGACTGG
i colAng1.NW_012115566v1       I 207 I 53
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macFas5.chr4_KE145577_random    69968 1982 +    231697 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=59767.000000
s hg38.chr6_GL000254v2_alt      1011341 52 +   4827813 TTTGTCCGAAAAGTgagaggagacggaggagaggagaggagagAAAGTGCAG
s panTro5.chr6                 29973894 52 + 175400573 TTTGTCCGAAAAGTgagaggagacggaggagaggcgaggagagAAAGTGCAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30207562 52 + 173848474 TTTGTCCGAAAAGTgagaggagacggaggagaggcgaggagagAAAGTGCAG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6008520 49 +   6154872 TCTGTCCGAAAAGTGAGAGGAGAC---GGAGAGGCGAGGAGAAAAAGTGCAG
i gorGor5.CYUI01015250v1       C 0 C 0
s macNem1.NW_012013156v1          63944 52 +    243043 TTTGTCCGAAAAGTGAGAGGAGGCGGAAGAGAGGTGAGAAGACCAAATGCAA
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          36624 52 -    735854 TTTGTCCGAAAAGTGAGAGGAGGCGGAAGAGAGGTGAGGAGACCAAATGCAA
i manLeu1.NW_012107142v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762135 53 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macFas5.chr4_KE145577_random    69968 1982 +    231697 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=213458.000000
s hg38.chr6_GL000254v2_alt      1011393 138 +   4827813 GACAAGACCAGAAAATGCA-----GGGGGCGGGTGATGAGCGATCCCGAGGAGGACTGAAAAGAGACGTGGAAGCAGGGTTGAGGTGTGGCGGGAACGGGCCGCGTCCAC-TCCCCGCACCCCCGACAGCGCACCTGAGCCCCG
s panTro5.chr6                 29973946 138 + 175400573 GACAAGACCAGAAAATGCA-----GGGGGCGGGTGATGAGCGATCCCGAGGAGGACTGAAAAGAGACGTGGAAGCAGGGTTGAGGTGTGGCGGGAACGGGCCGCGTCCAC-TCCCCGCACCCCCGACAGCGCACCTGAGCCCCG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30207614 138 + 173848474 GACAAGACCAGAAAATGCA-----GGGGGCGGGTGATGAGCGATCCCGAGGAGGACTGAAAAGAGACGTGGAAGCAGGGTTGAGGTGTGGCGGGAACGGGCCGCGTCCAC-TCCCCGCACCCCCGACAGCGCACCTGAGCCCCG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6008569 138 +   6154872 GACAAGACCAGAAAATGCA-----GGGGGCGGGTGATGAGCGATCCCGAGGAGGACTGAAAAGAGACGTGGAAGCAGGGTTGAGGTGTGGCGGGAACGGGCCACGTCCAC-TCCCCGCACCCTCGACAGTGCACCTGAGCCCCG
i gorGor5.CYUI01015250v1       C 0 C 0
s macNem1.NW_012013156v1          63996 143 +    243043 GAAGAGACCAGAAAGTGCAGGGTGGGGGGGGGGTGATGTGCGACCCCGAGGAGGACTGAAAAGAGACCAGAAAGCAGGGCTGAGGAGTGGCGGCAACCAGCCGCGTTCAG-TTCCGCCACCCCCGACATCGCACCTGAGCCCCG
i macNem1.NW_012013156v1       C 0 I 57
s manLeu1.NW_012107142v1          36676 138 -    735854 GAAGAGACCATTAAGTGCA-----GGGGGCGGGTGATGCGCGACCCCGAGGAGGACCGAAAAGAGATGAGAAAGCAGGGCTGAGGAGTGGCGGCAACCAGTCGCGTTCAG-TTCCGCCACTCCCGACATCGCACCTGAGCCCCG
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2762188 139 -   3067355 GAGGATACCTGAAAATGCA-----GGGGGTGGTGGATGGGCGATTCCGAAAAGGGTTGTAAAGAGACGGGAAAGCAGGGCTGAGGTGTGGCGGCAACGGGCCGAGTCCAGCTTCCCCTACCCCCGATACCGCACCTGAGCCCCG
i colAng1.NW_012115566v1       I 53 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macFas5.chr4_KE145577_random    69968 1982 +    231697 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=37487.000000
s hg38.chr6_GL000254v2_alt      1011531 37 +   4827813 CCTCGGCCGCACAGCGCTCGCCGCTACCCACCCGGAC
s panTro5.chr6                 29974084 37 + 175400573 CCTCGGCCGCACAGCGCTCGCCGCTACCCACCCGGAC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30207752 37 + 173848474 CCTCGGCCGCACAGCGCTCGCCGCTACCCACCCGGAC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6008707 37 +   6154872 CCTCGGCCGCACAGCGCTCGCCGCTACCCACCCGGAC
i gorGor5.CYUI01015250v1       C 0 C 0
s manLeu1.NW_012107142v1          36814 37 -    735854 ACGCGACCACAGAGCGCTCGCAGCGACACATTCGGAC
i manLeu1.NW_012107142v1       C 0 I 1
s colAng1.NW_012115566v1        2762327 37 -   3067355 CCTGGGCCGCACCGCCCGTGCTGCAACCCACTCAGGC
i colAng1.NW_012115566v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          64139 57 +    243043 I
e macFas5.chr4_KE145577_random    69968 1982 +    231697 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=61568.000000
s hg38.chr6_GL000254v2_alt      1011568 36 +   4827813 CCCCAGAAACGCCCCGCCGCTGCCGCTCCGCCGAGG
s panTro5.chr6                 29974121 36 + 175400573 CCCCAGAAACGCCCCGCCGCTGCCGCTCCGCCGAGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30207789 36 + 173848474 CCCCAGAAACGCCCCGCCGCTGCCGCTCCGCCGAGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6008744 36 +   6154872 CCCCAGAAACGCCCCGCCGCTGCCGCTCCGCCGAGG
i gorGor5.CYUI01015250v1       C 0 C 0
s macNem1.NW_012013156v1          64196 36 +    243043 CCCCAGAAACGCCACGCCGCTCCCGCTCCGCCGAgg
i macNem1.NW_012013156v1       I 57 I 5
s manLeu1.NW_012107142v1          36852 36 -    735854 CCCCAGAAACGCCACGCCGCTCCCGCTCCGCCGAgg
i manLeu1.NW_012107142v1       I 1 I 5
s colAng1.NW_012115566v1        2762364 36 -   3067355 TTGCGGAAACGCCCCGCTGCTCCTGCTAGGCCGAGG
i colAng1.NW_012115566v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macFas5.chr4_KE145577_random    69968 1982 +    231697 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=49602.000000
s hg38.chr6_GL000254v2_alt      1011604 61 +   4827813 ACCGCCAGGAACCCCACTTACCAGCAGCAGCTCCCTGGGGTGCAAAAAGGGCAGTGCGGAT
s panTro5.chr6                 29974157 61 + 175400573 ACCGCCAGGAACCCCACTTACCAGCAGCAGCTCCCTGGGGTGCAAAAAGGGCAGTGCGGGT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30207825 61 + 173848474 ACCGCCAGGAACCCCACTTACCAGCAGCAGCTCCCTGGGGTGCAAAAAGGGCAGTGCGGGT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6008780 61 +   6154872 ACCGCCAGGAACCCCACTCACCAGCAGCAGCTCCCTGGGGTGCAAAAAGGGCAGTGCGGGT
i gorGor5.CYUI01015250v1       C 0 C 0
s colAng1.NW_012115566v1        2762400 61 -   3067355 ATCGCCAGGAAGCCCGCTCACCAGCGGCAGCTCCCAGGCATGCAAAAAGGGCGGCGACGAC
i colAng1.NW_012115566v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          36888  5 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          64232  5 +    243043 I
e macFas5.chr4_KE145577_random    69968 1982 +    231697 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=38417.000000
s hg38.chr6_GL000254v2_alt      1011665 35 +   4827813 CAGGAACAGCAGGACTAGGCTCATCTCCATGGCCC
s panTro5.chr6                 29974218 35 + 175400573 CAGGAACAGCAGGACTAGGCTCATCTCCATGGCCC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30207886 35 + 173848474 CAGGAACAGCAGGACTAGGCTCATCTCCATGGCCC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6008841 35 +   6154872 CAGGAACAGTAGGACTAGGCTCATCTCCATGGCCC
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    71950 35 +    231697 CAGGAATAGCAGGACGCGTCCCAGCTCCTCGGCCT
i macFas5.chr4_KE145577_random I 1982 C 0
s colAng1.NW_012115566v1        2762461 35 -   3067355 CTGGAACAGCAGGACCCAGCCCAGCTCCATGGCCC
i colAng1.NW_012115566v1       C 0 I 80
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          36888  5 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          64232  5 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=21890.000000
s hg38.chr6_GL000254v2_alt      1011700 29 +   4827813 AGACTTTGCTTTCCTCGCAGTGGCTCAAG
s panTro5.chr6                 29974253 29 + 175400573 AGACTTTGCTTTCCTCGCAGTGGCTCAAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30207921 29 + 173848474 AGACTTTGCTTTCCTCGCAGTGGCTCAAG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6008876 29 +   6154872 AGACTTTGCTTTCCTTGCAGTGGCTCAAG
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    71985 29 +    231697 CAACTTTGCCAACCTAACAATGGCTCAAG
i macFas5.chr4_KE145577_random C 0 I 344
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762496 80 -   3067355 I
e manLeu1.NW_012107142v1          36888  5 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          64232  5 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=13488.000000
s hg38.chr6_GL000254v2_alt      1011729 24 +   4827813 CGGCTGCCAACCCAGCGGAGCCGC
s panTro5.chr6                 29974282 24 + 175400573 CGGCTGCCAACCCAGCGGAGCCGC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30207950 24 + 173848474 CGGCTGCCAACCCAGCGGAGCCGC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6008905 24 +   6154872 AGGCTGCCAACCCAGCGGAGCCGC
i gorGor5.CYUI01015250v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762496 80 -   3067355 I
e manLeu1.NW_012107142v1          36888  5 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          64232  5 +    243043 I
e macFas5.chr4_KE145577_random    72014 344 +    231697 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=15465.000000
s hg38.chr6_GL000254v2_alt      1011753 24 +   4827813 GAAGGCCCACCAGAAATTTC--CTGT
s panTro5.chr6                 29974306 24 + 175400573 GAAAGCCCACCAGAAATTTC--CTGT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30207974 24 + 173848474 GAAAGCCCACCAGAAATTTC--CTGT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6008929 24 +   6154872 GAAGGGCCACCAGAAATTTC--CTGT
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    72358 26 +    231697 GAAGGCCTCGCCGAAATTTCATCAGT
i macFas5.chr4_KE145577_random I 344 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762496 80 -   3067355 I
e manLeu1.NW_012107142v1          36888  5 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          64232  5 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=93182.000000
s hg38.chr6_GL000254v2_alt      1011777 78 +   4827813 CACCTGGCCCCACCCCAGCGACCGCTCACCCAATGAAAACTGGCGCCCGCAGCTTAGGGCCAATCACGAGCTGGGAGG
s panTro5.chr6                 29974330 78 + 175400573 CACCTGGCCCCACCCCAGCGACCGCTCACCCAATGAAAACTGGCGCCCGCAGCTTAGGGCCAATCACGAGCTGGGAGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30207998 78 + 173848474 CACCTGGCCCCACCCCAGCGACCGCTCACCCAATGAAAACTGGCGCCCGCAGCTTAGGGCCAATCACGAGCTGGGAGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6008953 78 +   6154872 CACCTGGCCCCACCCCAGCGACCGCTCACCCAATGAAAACTGGCGCCCGCAGCTTAGGGCCAATCACGAGCTGGGAGG
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    72384 78 +    231697 AACCTAGCCCCACCCCTGCGACTGCTCACCCAATGAAAATGGACGCCTGGATCGTAGGACCAATCATAAGCGGGGAGG
i macFas5.chr4_KE145577_random C 0 C 0
s colAng1.NW_012115566v1        2762576 78 -   3067355 CACCTGGCCCCACCCCAGCGGTCGCTCACCCAGTTAAAACTGACGCACGGAACTTAGGGCCAATCCTGAGCGGGGAGG
i colAng1.NW_012115566v1       I 80 I 395
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          36888  5 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          64232  5 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=10820.000000
s hg38.chr6_GL000254v2_alt      1011855 11 +   4827813 GCGGGGCCACA
s panTro5.chr6                 29974408 11 + 175400573 GCGGGGCCACA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30208076 11 + 173848474 GCGGGGCCACA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6009031 11 +   6154872 GCGGGGCCACA
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    72462 11 +    231697 GCGGGGCCACA
i macFas5.chr4_KE145577_random C 0 I 141
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e manLeu1.NW_012107142v1          36888  5 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          64232  5 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=1135020.000000
s hg38.chr6_GL000254v2_alt      1011866 2063 +   4827813 CTCAGAAGGGGAACGTTCCAGCGGTCAGGAGACCTGGAGAACTTTGGCTGGCGGGACCTGGAGCCCAGAAAAGGGGGAGCGCGCGGAAGCGCCGCCAAATGCGGGGACTGGCTCCGAGCAGCTGAGAGTACAGCCCCAACCGCATGAGCACGACCTGGGCCCTGCCGCCCTCCCTGTATTGCGACCACCCCATCCCCGCACCCCCACCCCTAGGATAGCGTGCCTCACCAAGACCGTTTCGCCAGCCACCCCATCAAGCTGACTGTCATTCGCTTGTTCTTTCCAGGACACACTTACAGAAGAGACGAGGCCTGGTTATTCTTCCAACACACTCCCCTCAGCCGCGCACAGCGTTACTGGCTATGTGGCCAGTGACCAGATTTGCAGACCTGTTTCCAGACCTCAGCTACCTCTGTTTCTGAAGCACCTGCCCCAGCTGATCCGCTAAGACGACAAATCTCTCAGACGTTTCAGCTTTACAATCTCCTTCTCCTCCCTTTTACTCAAAGCTAGGTCCCCTTTCTTATGGTCACTTCCTGTAAGTGTGTGAGGTCTCCCGGGGCTGCCTCTCTATTCAGCCCCTGGGTGATCAAAAGGCCAAGGAGGCAGCTTGCCAGTGTCCACTCCAACACCAAGCTCTCCCCAGACTCCCTTTTCCAGCCTGCTTTAGGACATCTGTACCTCTGAGACCATAGTAGCTTCCAATGTGACAGGTCTACAAGGACACTCTACACGTCTCGCATGACATCATCCTCTCTTCCTCCCCTGTTTCTCTTTCCGTGGTGCCTTCTGATTTCCCCCTTTTCCTTCTCAAGTACTCAAAGCTCCTCCAACCCTATTTTGATCCCACAGCCACTACTTTAGTCTCGGCTTTCAGCCTAGATCACTGCACAAGATTCAGCCTAGATCACTGTACAGGCTTCCTAAACACTGTGACTGTCCCAGCTATAGTCAGAGTGCTCTAAGACCCCCACAGCACCCCATCTGCTGAATGTCACACGTGAGGTCTCTACCATGGAAGCCACAGCTGCCACAACCTCCTGTCTGTCACCACCCCCATTTCTCTGGTGACATCCCTCTTTCCAGTGTTGCAGTAAAAGTGGGCTCCCCAATCTCCTTGCCCTGTCCCACCGGGATGCCACTGCCTAAGCAGTCTCCTGCTTCCAGATTACTGTCGCTTCTGCCTCTGAGCCCATTAGACCGTGTCACATCCTTAAATCTTCCCAATTAggctggtcagagtgtagtggtgtttacaactaattgatcacaaccaattacagatttcttttttccttctccactcccactgctttacttgactagcctttAAAAAAAgaaaatcttcccaattagataatagcgactgtggcacgatgttgtgattatgctaaaagccactgaccagtacattttTTTTTTTTTAACCAGGAACACATGCACTTTATTGAATGCCATTGTAGAAGAGTGTGTGAGGATAAAGCGCTGATACAGAACTCAGCTCTGGGGCCAGGACGAGGAATGGAAGTTGGAGTATGTGGAATACAGGTCATGGGCAGAGCTCCTGGCCTGGATGATGCCTCCTGATCTATCGACAGACTTGGAAGATCAACACTAGGATGATGACGGTGAGCAGAATGGTCATGATGATGCACACAATCAGGGCTCAGATGTTCAGGTACTTGGCAGTGGAGGCATAGGCCTGGGCCCCAGTCAGGTCTCCAACCATCTTCCTGTCCCTAGACTTCAGGGAGTAGGTGAATGCTATGAATCCCAGGCAGTGGGGGTTCATGAAGAGGATGTTGGACAGGGACCAGACAACATAGTCAGACACGGAGGTCTCGCTGCAGATATGGATCATGGTGGACATTGGGGGAGCAGGGTTGTGGGGCGCCCCCAGCACAGCCACCTCATGCTCCTCCTTGAGCATCTCATAGCTGGGGTTGGGGGGCGGGGGAGGGCAGCCACTGTTGGCAGGAATGAAGAAGGTTTGGGCAGTGTGGTTCATGGTGTCCAGCAAAGACCAGCTGTGGTCAGGTTGCTGGGATGGTTCTGAGTGGGCC
s panTro5.chr6                 29974419 2054 + 175400573 CTCAGAA-GGGAACGTTCCAGCGGTCAGGAGACCTGGAGAACTTTGGCTGGCGGGACCTGGAGCCCAGAAAAGGGGGAGCGCGCGGAAGCGCCGCCAAATGCGGGGACTGGCTCCGAGCAGCTGAGAGTACAGCCCCAACCGCATGAGCACGACC-AGGCCCTGCCGCCCTCCCTGTATTGCGACCACCCCATCCCCGCACCCCCACCCCTAGGATAGCGTGCCTCACCAAGACCGTTTCGCCAGCCACCCCATCAAGCTGACTGTCATTCGCTTGTTCTTTCCAGGACACACTTACAGAAGAGACGAGGCCTGGTCATTCTCCCAACACACTCCCCTCAGCCGCGCACAGCGTTACTGGCTATGTGGCCAGTGACCAGATTTGCAGACCTGTTTCCAGACCTCAGCTACCTCTGTTTCTGAAGCACCTGCCCCAGTTGATCCGCTCAGACGACAAATCTCTTAGACGTTTCAGCTTTACAATCTCCTTCTCCTCCCTTTTACTCAAAGCTAGGTCCCCTTTCTTATGGTCACTTCCTGTAAGTGTGTGAGGTCTCCCGGGGCTGCCTCTCTATTCAGCCCCTGGGTGATCAAAAGGCCAAGGAGGCAGCTTGCCAGTGTCCACTCCAACACCAAGCTCTCCCCAGACTCCCTTTTCCAGCCTGCCTTAGGACATCTGTACCTCTGAGACCATAGTACCTTCCAATATGACAGGTCTACAAGGACACTCTACACGTCTCGCACGACATCATCCTCTCTTCCTCCCCTGTTTCTCTTTCCGTGGGGCCTTCTGATTTCTCTCTTTTCCTTCTCAAGTACTCAAAGCTCCTCCAACCCTATTTTGATCCCACAGCCACTACTTTAGTCTCGGCTTTCAGCCTAGATCACTGCACAGGATTCAGCCTAGATTACCGTACAGGCTTCCTAAACACTGTGACTGTCCCAGCTATAGTCAGAGTGCCCTAAGACCCCCACAGCACCCCATCTGCTGAATGTCACACGTGAGGTCTCTACCATGGAAGCCACAGCTGCCACAACCTCCTGTCTGTCACCACCCCCATTTCTCTGGTGACATCCCTCTTTCCAGTGTTGCAGTAAAATTGGGCTCCCCAATCTCCTTGCCCTGTCCCACCGGGATGCCACTGCCTAAGCAGTCTCCTGCTTCCAGATTACTGTCGCCTCTGCCTCTGAGCCCATTAGACCATGTCACATCCTTAAATCTTCCCAATTAggctggtcagagtgtagtggtgtttacaactaattgatcacaaccaattacagatttcttttttccttctccgctcccactgcttcacttgactagcctttAAAAAAAgaaaatcttcccaattagacaatagcgactgtggcacgatgttgtgattatgctaaaagccactgaccagtaca----ttttTTTTTAACCAGGAACACATGCACTTTATTGAATGCCATTGTAGAAAAGTGTGTGAGGATAAAGGGATGATACAGAACTCAGCTCTGGGGCCAGGATGAGGAATGGAAGTTGGAGTATGTGGAATACAGGTCATGGGCAGAGCTCCTGGCCTGGATGATGCCTCCTGATCTATCGACAGACTTGGAAGATCAACACTAGgatgatgatggtgagcagaatggtcatgatgatgCACACAATCAGGGCTCAGATGTTCAGGTACTTGGCAGTGGAGGCATAGGCCTGGGCCCCAGTCAGGTCTCCAATCATCTTCCTGTCCCTAGACTTCAGGGAGTAGGTGAATGCTATGAATCCCAGGCAGTGGGGGTTCATGAAGAGGATGTTGGACAGGGACCAGACAACATAGTCAGACACGGAGGTCTCGCTGTAGATATGGATCATGCTGGACATCGGGGGAGCAGGGTTGTGGGGTGCCCCCAGCACAGCCACCTCATG---CTCCTTGAGCATCTCATAGCTGGGGTTGGGGGGCGGGGGAGGGCAGCCGCTGTTGGCAGGAATGAAGAAGGTTTGGGCAGTGTGGTTCATGGTGTCCAGCAAAGACCAGCTGTGGTCAGGTTGCTGGGATGGTTCTGAGTGGGCC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30208087 2059 + 173848474 CTCAGAA-GGGAACGTTCCAGCGGTCAGGAGACCTGGAGAACTTTGGCTGGCGGGACCTGGAGCCCAGAAAAGGGGGAGCGCGCGGAAGCGCCGCCAAATGCGGGGACTGGCTCCGAGCAGCTGAGAGTACAGCCCCAACCGCATGAGCACGACCAGGGCCCTGCCGCCCTCCCTGTATTGCGACCACCCTATCCCCGCACCCCCACCCCTAGGATAGCGTGCCTCACCAAGACCGTTTCGCCAGCCACCCCATCAAGCTGACTGTCATTCGCTTGTTCTTTCCAGGACACACTTACAGAAGAGACGAGGCCTGGTCATTCTCCCAACACACTCCCCTCAGCCGCGCACAGCGTTACTGGCTATGTGGCCAGTGACCAGATTTGCAGACCTGTTTCCAGACCTCAGCTACCTCTGTTTCTGAAGCACCTGCCCCAGTTGATCCGCTCAGACGACAAACCTCTTAGACGTTTCAGCTTTACAATCTACTTCTCCTCCCTTTTACTCAAAGCTAGGTCCCCTTTCTTATGGTCACTTCCTGTAAGTGTGTGAGGTCTCCCGGGGCTGCCTCTCTATTCAGCCCCTGGGTGATCAAAAGGCCAAGGAGGCAGCTTGCCAGTGTCCACTCCAACACCAAGCTCTCCCCAGACTCCCTTTTCCAGCCTGCCTTAGGACATCTGTACCTCTGAGACCATAGTACCTTCCAATATGACAGGTCTACAAGGACACTCTACACGTCTCGCACGACATCATCCTCTCTTCCTCCCCTGTTTCTCTTTCCGTGGGGCCTTCTGATTTCTCTCTTTTCCTTCTCAAGTACTCAAAGCTCCTCCAACCCTATTTTGATCCCACAGCCACTACTTTAGTCTCGGCTTTCAGCCTAGATCACTGCACAGGATTCAGCCTAGATTACCGTACAGGCTTCCTAAACACTGTGACTGTCCCAGCTATAGTCAGAGTGCCCTAAGACCCCCACAGCACCCCATCTGCTGAATGTCACACGTGAGGTCTCTACCATGGAAGCCACAGCTGCCACAACCTCCTGTCTGTCACCACCCCCATTTCTCTGGTGACATCCCTCTTTCCAGTGTTGCAGTAAAATTGGGCTCCCCAATCTCCTTGCCCTGTCCCACCGGGATGCCACTGCCTAAGCAGTCTCCTGCTTCCAGATTACTGTCGCCTCTGCCTCTGAGCCCATTAGACCGTGTCACATCCTTAAATCTTCCCAATTAggctggtcagagtgtagtggtgtttacaactaattgatcacaaccaattacagatttcttttttccttctccgctcccactgcttcacttgactagcctttAAAAAAAgaaaatcttcccaattagataatagcgactgtggcacgatgttgtgattatgctaaaagccactgaccagtaca---ttttTTTTTTAACCAGGAACACATGCACTTTATTGAATGCCATTGTAGAAAAGTGTGTGAGGATAAAGGGATGATACAGAACTCAGCTCTGGGGCCAGGACGAGGAATGGAAGTTGGAGTATGTGGAATACAGGTCATGGGCAGAGCTCCTGGCCTGGATGATGCCTCCTGATCTATCGACAGACTTGGAAGATCAACACTAGgatgatgatggtgagcagaatggtcatgatgatgCACACAATCAGGGCTCAGATGTTCAGGTACTTGGCAGTGGAGGCATAGGCCTGGGCCCCAGTCAGGTCTCCAACCATCTTCCTGTCCCTAGACTTCAGGGAGTAGGTGAATGCTATGAATCCCAGGCAGTGGGGGTTCATGAAGAGGATGTTGGACAGGGACCAGACAACATAGTCAGACACGGAGGTCTCGCTGCAGATATGGATCATGGTGGACATCGGGGGAGCAGGGTTGTGGGGTGCCCCCAGCACAGCCACCTCATGCTCCTCCTTGAGCATCTCATAGCTGGGGTTGGGGGGCGGGGGAGGGCAGCCGCTGTTGGCAGGAATGAAGAAGGTTTGGGCAGTGTGGTTCATGGTGTCCAGCAAAGACCAGCTGTGGTCAGGTTGCTGGGATGGTTCTGAGTGGGCC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6009042 2037 +   6154872 CTCAGAA-GGGAACGTACCAGTGGTCAGGAGACCTGGAGAACTTTGGCTGGCGGGACCTGGAGCCCAGAAACGGGGGAGCGCGCGGAAGCGCCGCCAAATGCGGGGACTGGCTCCGAGCAGCTGAGAGTACAGCCCCAACCGCATGAGCACGACCAGGGCCCTGCCGCCCTCCCTGTATTGCGACCACCCCATCCCCGCACCCCCACCCCTAGGATAGCGTGCCTCACCAAGACGGTTTCGCCAGCCACCCCATCAAGCTGACTGTCATTCGCTTGTTCTTTCCAGGACACACTTACAGAAGAGACGAAGCCTGGTTATTCTCCCAACACACTCCCCTCAGCCGCGCACAGCGTTACTGGCTATGTGGCCAGTGACCAGATTTGCAGACCTGTTTCCAGACCTCAGCTACCTCTGTTTCTGAAGCACCTGCCCCAGTTGATCCGCTCAGACGACAAATCTCTTAGACGTTTCAGCTTTACAATCTCCTTCTCCTCCCTTTTACTCAAAGCTAGGTCCCCTTTCTTATGGTAACTTCCTGTAAGTGTGTGAGGTCTCCCGGGGCTGCCTCTCTATGCAGTCCCTGGGTGATCAAAAGGCCAAGGAGGCAGCTTGCCTGTGTCCACTCCAACACCAAGCTCTCCCCAGACTCCCTTTTCCAGCCTGCCTTAGGACATCTGTACCTCTGAGACCATAGTACCTTCCAATGTGACAGGTCTACAAGGACACTCTACACGTCTCGCACGACATCATCCTCTCTTCCTCCCCTGTTTCTCTTTCCGTGGTGCCTTCTGA-TTCCCCCTTTTCCTTCTCAAGTACTCAAAGCTCCTCCAACCCTATTTTGATCCCACAGCCACTACTTTAGTCTCGGCTTTCAGCCTAGATCACTGCACAGGATTCAGCCTAGATTACTGTACAGGCTTCCTAAACACTGTGACTGTCCCAGCTATAGTCAGAGTGCCCTAAGACCCCCACAGCACCCCATCTGCTGAATGTCACACGTGAGGTCTCTACCATGGAAGCCACAGCTGCCACAACCTCCTGTCTGTCACCACCCCCATTTCTCTGGTGGCATCCCTCTTTCCAGTGTTGCAGTAAAAGTGGGCTCCCCAATCTCCTTGCCCTGTCCCACCGGGATGCCACTGCCTAAGCAGTCTCCTGCTTCCAGATTACTGT-GCCTCTGCCTCTGAGCCCATTAGACCGTGTCACATCCTTAAATCTTCCCAATTAggctggtcagagtgtagtggtgtttacaactaattgatcacaaccaattacagatttcttttttccttctccactcccactgcttcgcttgactagccttt-AAAAAAgaaaatcttcccaattagataatagcgactgtggcacgatgttgtgattatgctaaaagccactgaccaataca---ttttTTTTTTAACCAGGAACACATGCACTTTATTGAATGCCATTGTAGAAAAGTATGTGAGGATAAAGGGCTGATACAGAACTCAGCTCTGGGGCCAGGACGAGGAATGGAAGTTGAAGTATGTGGAATACAGGTCATGGGCAGAGCTCCTGGCCTGGATGATGCCTCCTGATCTATCGACAGACTTGGAAGATCAACACTAGgatgatgatggtgagcagaatggtcatgatgatgCACACAATCAGGGCTCAGATGTTCAGGTACTTGGCAGTGGAGGCATAGGCCTGGGCCCCAGTCAGGTCTCCAACCATCTTTCTGCCCCTAGACTTCAGGGAGTAGGTGAATGCTATGAATCCCAGGCAGTGGG-------------------GGACAGGGACCAGACAACATAGTCAGACACGGAGGTCTTGCTGCAGATATGGATCATGGTGGACATCGGGGGAGCAGGGTTGTGGGTCGCCCCCAGCACAGCCACCTCATGCTCCTCCTTGAGCATCTCATAGCTGGGGTTGGGGGGTGGGGGAGGGCAGCCGCTGTTGGCAGGAATGAAGAAGGTTTGGGCAGTGTGGTTCATGGTGTCCAGCAAAGACCAGCTGTGGTCAGGTTGCTGGGATGGTTCTGAGTGGGCC
i gorGor5.CYUI01015250v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654  395 -   3067355 I
e manLeu1.NW_012107142v1          36888    5 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          64232    5 +    243043 I
e macFas5.chr4_KE145577_random    72473  141 +    231697 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=376368.000000
s hg38.chr6_GL000254v2_alt      1013929 490 +   4827813 ctggactgtacatttttaaatggtaaattacgtggcacataaattatatctcgataaTAA-AACACCATGCA-AAAGCCTCTTTCTACTGAAAGAATCATCTCGTCCCCAACACACACGTCTCTTACTCTTTGGAACATCTAGCcagtggtcctcaaacctagccacttcacagaaccacctggagagtttttaatatccacggtcccaggtcacagccaaaaccaattgaatcagtaaggctaggttggacctaagcttcaatatcttttaaagctctctacgtgcttccaatgtgtaggcaagttttagaaccactgTTCTAGCCCATGGTTTGAACCTCCCTGATGGGTACCAACTTTGCCTGCATTCTTGAACTCCATCTAC--------TATttatttatttatttatt--------------tttaagagg--gggagatctcactctgccg-ccagttggagggcatcagtgtgatcacagctcactgcagcttcagatgcctgggccca
s panTro5.chr6                 29976473 498 + 175400573 AtggactgtacatttttaaatggtaaattacgtggcacataaattatatctcgataaTAA-AACACCATGCA-AAAGCCTCTTTCTACTGAAAGAATCATCTCGTCCCCAACACACATGTCTCTTACTCTTTGGAACATCTAGCcagtggtcctcaaacctagccacttcacagaaccacctggagagtttttaatatccacggtcccaggtcacagccaaaaccaattgaatcagtaaggctaggttggacctaagcttcaatatcttttaaagctccctacgtggttccaatgtgtaggcaagttttagaaccactgTTCTAGCCCATGGTTTGAACCTCCCTGATGGGTACCAACTTTGCCTGCATTCTTGAACTCCATCTACtatttatttatttatttatttatttatt--------------tttaagagg--gggagatctcactctcccg-ccagttggagggcatcagtgtgatcacagctcactgcagcttcagatgcctgggccca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30210146 512 + 173848474 ctggactgtacatttttaaatggtaaattacgtggcacataaattatatctcgataaTAA-AACACCATGCA-AAAGCCTCTTTCTACTGAAAGAATCATCTCGTCCCCAACACACACGTCTCTTACTCTTTGGAACATCTAGCcagtggtcctcaaacctagccacttcacagaaccacctggagagtttttaatatccacggtcccaggtcacagccaaaaccaattgaatcagtaaggctaggttggacctaagcttcaatatcttttaaagctccctacgtggttccaatgtgtaggcaagttttagaaccactgTTCTAGCCCATGGTTTGAACCTCCCTGATGGGTACCAACTTTGCCTGCATTCTTGAACTCCATCTACtatttatttatttatttatttatttatttatttatttatttatttaAGATG--GGGAgatctcactctgccg-ccagttggagggcatcagtgtgatcacagctcactgcagcttcagatgcctgggccca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6011079 498 +   6154872 CTCGACTGTACATTTTTAAATGGTAAATTACGTGGCACATAAATTATATCTCGATAATAA-AACACCATGCA-AAAGCCTCTTTCTACTGAAAGAATCATCTCGTCCCCAACACACACGTCTCTTACTCTTTGGAACATCTAGCcagtggtcctcaaacctagccacttcacggaaccacctggagagtttttaatatccacggtcccaggtcacagccaaaaccaattgaatcagtaaggctaggttggacctaagcttcaatatcttttaaagctccctacgtggttccaatgtgtaggcaagttttagaaccactgTTCTAGCCCATGGTTTGAACCTCCCTGATGGGTACCAACTTTGCCTGCATTCTTGAACTCCATCTACtatttatttatttatttatttatttatt--------------tttaagatg--gggagatctcactctgccg-ccagttggagggcatcagtgtgatcacagctcactgcagcttcagatgcctgggccca
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    72614 470 +    231697 ctgaactgtacacttgaaattggtaaattatgaggcacatgaattgtatcccactaaTAATAACGCTGTCCAGAAAGCCTCTTTCAATTGAGAGAACTGCCTCCTCCCAAACACACA--TTTCTTTGTGTTCAGAGCATCTAGCcaggagtcctcaaacctgt---cttcacagaaccacctggagaggttttaatatccacggtcccaggccacagcccaaaccaatggaatcagtaagcctaggttagacctaagccttagcatcttttaaagctccctggatggttccaatgtgtagtcaagttttagaaccactATTCTAGTCCATGGTTTGAACATCCCTGAT-GGTACCAACTCAGCCTGCCTtttt---------------------------tttttttttttctt--------------tataatgagctgggggatctcactctgtcacccagttggagtgcagctgtgtgatcacagctcacattagcctccaatgcctgggttgg
i macFas5.chr4_KE145577_random I 141 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e manLeu1.NW_012107142v1          36888   5 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          64232   5 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=642987.000000
s hg38.chr6_GL000254v2_alt      1014419 399 +   4827813 agcaatccagccacttcagcctcctgagtacctgggactgtaggtgagtgccaccatgcccagcTGTCATCTACCATCTTGTACCATCCCTCACTACACGATGAACAGTCCATGATCTGGAACTGTGTTCATTCTATCTTTGTCACTCTTACAAACAT--TTTTTA-AAACTGAACTATACCTATAATTACTAACCATTCCTCTTAAAACTCCTAGCCTACACATTTCTGTGAGTGAAAAT-TTAAGCATCACAGGGTTTTAACAATTACTTAGATTTCCCATCCACATTCACTGATTATTTATTTTGATCATCATAATCTATTGCGCACAGCAGGGACTGGGGTCCTGTCCCCACCTTAGGGGGATTATTTACACTCCTAAAGATTACAAGAGTAGTGAGGG
s panTro5.chr6                 29976971 399 + 175400573 aataatccagccacttcagcctcctgagtacctgggactgtaggtgagtgccaccatgcccagcTGTCATCTACCATCTTGTACCATCCCCCACTACACGATGAACAGTCCATGATCTGGAACTGTGTTAATTCTATCTTTGTCACCCTTACAAACAT--TTTTTA-AAACTGAACTGTACCTGTAATTACTAACCATTCCTCTTAAAACTCCTAGCCTACACATTTCTGTGAGTGAAAAT-TTAAGCATCACAGGGTCTTAACAATTACTTAGATTTCCCATCCACATTCACTGATTATTTATTTTGATCATCATAATCTATTGTGCACAGCAGGGACTGGGGTCCTGTCCCCACCTTAGGGGGATTATTTACACTCCTAAAGATTACAAGAGTAGTGAGGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30210658 399 + 173848474 aataatccagccacttcagcctcctgagtacctgggactgtaggtgagtgccaccatgcccagctGTCATCTACCATCTTGTACCATCCCCCACTACACGATGAACAGTCCATGATCTGGAACTGTGTTAATTCTATCTTTGTCACCCTTACAAACAT--TTTTTA-AAACTGAACTATACCTATAATTACTAACCATTCCTCTTAAAACTCCTAGTCTACACATTTCTGTGAGTGAAAAT-TTAAGCATCACAGGGTCTTAACAATTACTTAGATTTCCCATCCACATTCACTGATTATTTATTTTGATCATCATAATCTATTGAGCACAGCAGGGACTGAGGTCCTGTCCCCACCTTAGGGGGATTATTTACACTCCTAAAGATTACAAGAGTAGTGAGGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6011577 398 +   6154872 aacaatccagccacttcagcctcccgagtacctgggactgtaggtgagtgccaccatgcccagcTGTCATCTACCATCTTGTACCATCCCCCACTACACGATGAACAGTCCATGATCTGGAACTGTGTTCATTCTATCTTTGTCACTCTTACAAACAT--TTTATA-AAACTGAACTATACCTATAATTACTAACCATTCCTCTTAAAACTCCTAGCCTACACATTTCTGTGAGTGAAAAT-TTAAGCATCACAGGGTTTTAACAATTACTTAGATTTCCCATCCACATTCACTGATTATTTATTTTGATCATCATAATCTATTGCGCACAGCAGGGACTGGGGTCCTGT-CCCACCTTAGGGGGATTATTTACACTGCTAAAGATTACAAGAGTAGTGAGGG
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    73084 401 +    231697 agcaatcttgtcacctcagcctcctgagtagttgggactacaggcgagtgcaaccaggcccagcTGTCATTTAGCATCTGGTACCAAcccccattagacagtgaactatccatgatcaggaactgtgtccattccatcttcgtCAGTCTTACGAACATTATTTTTTAAAGCGGAACTATACCTATGATTACTAACCATTCCCC--AAGACCCCTAGCCTGCACTTTTCTGTAGATGAAAACGTCATACATCACAGAGTTTTAACAATTACTTACTTTTCCCAACCACATTCACTGACTGTTTATTTCAATCATCATAATTTATTGAGCACAGCAGGGACTGGGGTCCTGTCCCCACcttagagggattatttacactgctaaaggtcacaagggtagtgaggg
i macFas5.chr4_KE145577_random C 0 I 3
s macNem1.NW_012013156v1          64237 400 +    243043 agcaatcctaccacttcagcctcctgagtagttgggactataggggagtgccaccacgcccaactGTCATTTACCATCTGGTACCAACACCCATTAGAGAGTGAACCATCCATGATCAGGAACTGTGTCCATTCCATCTTCGTCAGCCTTAGGAACATTATTTTTT-AAGCGGAACTCTACCTGTGATTACTAACCATTCCCC--AAGACCCCTAGCCTACACTTTTCTGTAGATGAAAATGTCATACATCACAGAGTTTTAACAATTACTCAATTTTCCCATCCACATTCACTGATTATTTATTTTGATCATCATAATTTATTGAGCACAGCAGGGACTGGGGTCCTGTCCCCATcttagagggattatttacactgctgaaggtcacaagtgtagtgaggg
i macNem1.NW_012013156v1       I 5 I 44
s manLeu1.NW_012107142v1          36893 400 -    735854 agcaatcctgccacctcagcctcctgagtagttgggactataggcgagtgccaccacgcccaactGTCATTTACCATCTGGTACCAGCCCCCATTAGACAATGAACAATCCATGATCAGGAACTATGTCCATTCCATCTTCGTCAGCCTTACGAACATTATTTTTT-AAGCGGAACTCTACCTATGATTACTAACCATTCCCC--AAGACCCCTAGCCTGCACTTTTCTGTAGATGAAAATGTCATACATCACAGAGTTTTAACAATTACTCAGTTTTCCCATCCACATTCACTGATTATTTATTTTGATCATCATAATTTATTGAGCACAGACGGGACTGGGGTCCTGTCCCCACcttagagggattatttacactgctaaaggtcacaagggtagtgaggg
i manLeu1.NW_012107142v1       I 5 I 3
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=36597.000000
s hg38.chr6_GL000254v2_alt      1014818 37 +   4827813 GCAGAGAGGTGGTCTCAGCTCTCCTGACAGAGGTCTC
s panTro5.chr6                 29977370 37 + 175400573 GCAGAGAGGTGGTCTCAGCTCTCCTGACACAGGTCTC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30211057 37 + 173848474 GCAGAGAGGTGGTCTCAGCTCTCCTGACACAGGTCTC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6011975 37 +   6154872 GCAGAGAGGTGGTCTCAGCTCTCCTGACACAGGTCTC
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    73488 37 +    231697 agagtgagatagaccaagctctcctgacacttgtccc
i macFas5.chr4_KE145577_random I 3 I 4
s manLeu1.NW_012107142v1          37296 37 -    735854 agaggcagacagacccagctctcctgacactggtccc
i manLeu1.NW_012107142v1       I 3 I 4
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          64637 44 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=202659.000000
s hg38.chr6_GL000254v2_alt      1014855 129 +   4827813 CCTTCCCTCCACAGTGTCTACCCTCCCTCCAGGACGACCTTCCTCCCTGTGCCAGCTCTAGCAAAGGGTCTCATTCAGCTCA-CCCCAaaaaatacttttaatacttaaataacg---acaataataataata
s panTro5.chr6                 29977407 129 + 175400573 CCTTCCCTGCACAGTGTCTACCCTCCCTCCAGGAGGACCTTCCTCCCTGTGCCAGCTCTAGCAAAGGGTCTCATTCAGCTCA-CCCCCAAAAATACTTTCAATACTTAAATAACG---ACAATAATAATAATA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30211094 129 + 173848474 CCTTCCCTCCACAGTGTCTACCCTCCCTCCAGGACGACCTTCCTCCCTGTGCCAGCTCTAGCAAAGGGTCTCATTCAGCTCA-CCCCCAAAAATACTTTCAATACTTAAATAACG---ACAATAATAATAATA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6012012 128 +   6154872 CCTTCCCTCCACAGTGTCTACCCTCCCTCCAGGACGACCTTCCTCCCTGTGCCAGCTCTAGCAAAGGGTCTCATTCAGCTCA-CCCC-aaaaatacttttaatacttaaataacg---acaataataataata
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    73529 130 +    231697 ccttccctccacagtgtctaccctgtctcgAGGAC--TTTTTCTCCCTGTGCCAGTTCCAGCAAAGGGTCTCATTCAGCTAA-CCCCCAAAAAGACTTTTAATACTTCAATGACGataataataataataata
i macFas5.chr4_KE145577_random I 4 I 12
s macNem1.NW_012013156v1          64681 128 +    243043 tcctccctccacagtgtctaccctctctcgAGGAC--TTTTTCTCCCTGTTCCAGTTCCAGCAAAGGGTCTTATTCAGCTAACCCCCCCAAAAGACTTTTAACACTTCAATGACG---ataataacaacaata
i macNem1.NW_012013156v1       I 44 I 12
s manLeu1.NW_012107142v1          37337 127 -    735854 ccttccctccacagtgtctaccctctctcgAGGAC--TTTTTCTCCCTGTTCCAGTTCCAGCAAAGGGTCTTATTCAGCTCA-CCCCCCAAAAGACTTTTAATACTTCAATGACG---ataataataataata
i manLeu1.NW_012107142v1       I 4 I 132
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=112575.000000
s hg38.chr6_GL000254v2_alt      1014984 119 +   4827813 TACAAGGTTAGTTCCAAGGCATGTAGAGGTGATGGCCAGCAGAGGTGAAGCCAATC-CACCCTTTCTGGGCTAGGGGAAGCCCAGATGGTCTTCCGCTCGGGGTGAGGCACTCCCCAGGG
s panTro5.chr6                 29977536 119 + 175400573 TACAAGGTTAGTTCCAAGGCATGTAGAGGTGATGGCCAGCAGAGGTGAAGCCAATC-CACCCTTTCTGGGCTAGGGGAAGCCCAGATGGTCTTCCGCTCCGGGTGAGGCACTCCCCAGGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30211223 119 + 173848474 TACAAGGTTAGTTCCAAGGCATGTAGAGGTGATGGCCAGCAGAGGTGAAGCCAATC-CACCCTTTCTGGGCTAGGGGAAGCCCAGATGGTCTTCCGCTCCGGGTGAGGCACTCCCCAGGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6012140 119 +   6154872 TACAAGGTTAGTTCCAAGGCATGTAGAGGTGATGGCCAGCAGAGGTGAAGCCAATC-CACCCTTTCTGGGCTAGGGGAAGCCCAGATGGTCTTCCGCTCGGCGTGAGGCACTCCCCAGGG
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    73671 115 +    231697 CGCAAAGTTTGTTCCAACGCGTTTAGAGGTGATCGCGACA-----TCAAGCGTGTCCCTCCCTTTCTGGGGTAGGGGAGACAGTGATGATCTTGGACTTTGGGTGAGTCGCTCCCCAGGG
i macFas5.chr4_KE145577_random I 12 C 0
s macNem1.NW_012013156v1          64821 119 +    243043 TGCAAAGTTTGTTCCTACGCATTTAGAGGTGATCACGACAAGACGGGAAGCCAATCTCTCCCTTTTTGGGGTAGGGGAGGCCCTGATAATCTTGGACTTTGGGTGAGTCCCTCCCCA-GT
i macNem1.NW_012013156v1       I 12 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e manLeu1.NW_012107142v1          37464 132 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=1548365.000000
s hg38.chr6_GL000254v2_alt      1015103 940 +   4827813 TCCAGGCCTGGCTGCCCGTCCCCCACCAAGTCTCCCAGGCC--TTCTGTCCAATGCCCTCTCCCTCCACCCCACCTCCAGCCCCTTCTGCTCTGCCCCATCAACTACGTTTTCTTCCTCAGGACTCGCCTTAGACCTCTGAACTCCGGGGCACAGAGGCGACTTCCTCCTCGCAGACTTTAGGCGCCACTGCTGGGTCCGGAAAAGAAAGAGAAAGGACCCAGTGCGGTCGCTTACAGAACCCAGGGCGGGGTTGGGCTGGGCGCCCGCGCGCGTTTTCAAGCCTGCGGCCCGGAGTTCACTGCGAGGACTGAGATCACCCGTCACCCCGCCCTGGTCTAC----------AAGTGTTTGCTGATATAGAAACGGAATAACGGCGCTGTGGGCTGGGGAGGACGGAGTTGCCTTCAGGCTTCTGGTCTCCAGCCGCGGGGCACTCACAGCTG-CCGCTGTGAAAATGCAGACCTGTGGGGCAGGAATTCCGAGTCCGGGGTGGAGCGCGATGTGGAATCTGACTCGCTTGAAACAGCACCGCGGTGGATTCGGATCCGGGTGAGTAGGGAAATGCGCCTCAGCCCCTCCCACGGGCCGCCCACGGATTCCAGGATCCGAAAACGCTTCCAGCTGCTCCGCCACCCCAGGAAGGCAGCGCCTGCCTCTGGGCGGTTCTGACGGAAACTGGCTCCTCCGCCTGCAGGAAAACTCACAACTAAGGGGCCAGGAGAAAGCCTCTCAGGGTCCCGCCCCTTCAGTGAGGATCCTAAATTTACATCCCGAGTGTGGCC-CCATCAAAGACTGGAGCGACGTTGACTGAAATGATACAAGACCAGCAGGGGCGCAGGGCGCTGCGGCCCTCAGAATGCGGTGACAGCGCCGCCTCGCGTCCCTTCCCCGACCTGCCCCAGGCGGACGCGGTGACGTGTGTTGGCCT----CGAGGCTGGAATACA
s panTro5.chr6                 29977655 940 + 175400573 TCCAGGCCTGGCTGCCCATCCCCCACCAAGTCTCCCAGGCC--TTCTGTCCAATGCCCTCTTCCTCCACCCCACCTCCAGCCCCTTCTGCTCTGCCCCATCAACTACGTTTTCTTCCTCAGCACTCGCCTTAGACCTCTGAACTCCGGGGCAAAGGGGCGACTTCCTCCTCGCAGACTTTAGGCGCCACTGCTGGGTCCAGAAAAGAAAGAGAAAGGACCCAGTGCGGTCGCTTACAGAACCCAGGGCGGGGTTGGGCTGGGCGCCCGCGCGCGTTTTCAAGCCTGCGGCCCGGAGTTCACTGCGAGGACTGAGATCACCCGTCACCCCGCCCTGGTCTAC----------AAGTGTTTGCTGATATAGAAACGGAATAACGGCGCTGTGGGCTGGGGAGGGCGGAGTTGCCTTCAGGCTTCTGGTCTCCAGCCGCGGGGCACTCACAGCTG-CCGCTGTGAAAATGCAGACCTGTGGGGCAGGAATTCCGAGTCCGGGGTGGAGCGCGATCTGGAATCTGACTCGCTTGAAACAGCACCGCGGTGGATTCGGATCCGGGTGAGTAGGGAAATGCGCCTCAGCCCCTCCCACGCGTCACCCACGGATTCCAGGATCCGAAAACGCTTCCAGCTGCTCCGCCACCCCAGGAAGGCAGCGCCTGCCTCTGGGCGGTTCTGACGGAAACGGGCTCCGCCGCCTGCAGGAAAACTCACAACTAAGGGGCCAGGAAAAAGCCTCTCAGGGTCCCGCCCCTTCAGTGAGGATCCTAAATTTACATCCCGATTGTGGCC-CCATCAAAGACTGGAGCGACGTTCACTGAAATGATACAAGACCAGCAGGGGCGCAGGGCGCTGCGGCCCTCAGAATGCGGTGACAGCGCCGCCTCGCGTCCCTTCCCCGACCTGCCCCAGGCGGACGCGGTGACATGTGTTGGCCT----CCAGGCTGGAATACA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30211342 940 + 173848474 TCCAGGCCTGGCTGCCCATCCCCCACCAAGTCTCCCAGGCC--TTCTGTCCAATGCCCTCTTCCTCCACCCCACCTCCAGCCCCTTCTGCTCTGCCCCATCAACTACGTTTTCTTCCTCAGCACTCGCCTTAGACCTCTGAACTCCGGGGCAAAGGGGCGACTTCCTCCTGGCAGACTTTAGGCGCCACTGCTGGGTCCGGAAAAGAAAGAGAAAGGACCCAGTGCGGTCGCTTACAGAACCCAGGGCGGGGTTGGGCTGGGCGCCCGCGCGCGTTTTCGAGCCTGCGGCCCGGAGTTCACTGCGAGGACTGAGATCACCCGTCACCCCGCCCTGGTCTAC----------AAGTGTTTGCTGATATAGAAACGGAATAACGGCGCTGTGGGCTGGGGAGGGCGGAGTTGCCTTCAGGCTTCTGGTCTCCAGCCGCGGGGCACTCACAGCTG-CCGCTGTGAAAATGCAGACCTGTGGGGCAGGAATTCCGAGTCCGGGGTGGAGCGCGATGTGGAATCTGACTCGCTTGAAACAGCACCGCGGTGGATTCGGATCCGGGTGAGTAGGGAAATGCGCCTCAGCCCCTCCCACGCGTCACCCACGGATTCCAGGATCCGAAAACGCTTCCAGCTGCTCCGCCACCCCAGGAAGGCAGCGCCTGCCTCTGGGCGGTTCTGACGGAAACTGGCTCCGCCGCCTGCAGGAAAACTCACAACTAAGGGGCCAGGAAAAAGCCTCTCAGGGTCCCGCCCCTTCAGTGAGGATCCTAAATTTACATCCCGATTGTGGCC-CCATCAAAGACTGGAGCGACGTTCACTGAAATGATACAAGACCAGCAGGGGCGCAGGGCGCTGCGGCCCTCAGAATGCGGTGACAGCGCCGCCTCGCGTCCCTTCCCCGACCTGCCCCAGGCGGACGCGGTGACATGTGTTGGCCT----CGAGGCTGGAATACA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6012259 940 +   6154872 TCCAGGCCTGGCTGCCCGTCCCCCACCAAGTCTCCCAGGCC--TTCTGTCCAATGCCCTCT-CCTCCACCCCACCTCCAGCCCCTTCTGCTCTGCCCCATCAACTACGTGTTCTTCCTCAGGACTCGCCTTAGACCTCTGAACTCCGGGGCACAGAGGCGACTTCCTCCTCGCAGACTTTAGGCACCACTGCTGGGTCCGGAAAAGAAAGAGAAAGGACCCAGTGCGGTCGCTTACAGAACCCAGGGCGGGGTTGGGCTGGGCGCCCCCGCGCGTTTTCAAGCCTGCGGCCCGGAGTTCACTGCGAGGACTGAGATCACCCGTCACCCCGCCCTGGTCTAC----------AAGTGTTTGCTGATATAGAAACGGAATAACGGCGCTGTGGGCTGGGGAGGACGGAGTTGCCTTCAGGCTTCTGGTCTCCAGCCGCGGGGCACTCACACCTGCCCGCTATGAAAATGCAGACCTGTGGGGCAGGAATTCCGAGTCCGGGCTGGAGCGCGATGTGGAATATGACTCGCTTGAAACAGCACCGCGGTGGATTCGGATCCGGGTGAGTAGGGAAATGCGCCTCAGCCCCTCCCACGGGCCGCCCACGGATTCCAGGATCCGAGAACGCTACCAGCTGCTCCGCCACCCCAGGAAGGCAGCGCCTGCCTCTGGGCGGTTCTGACGGAAACTGGCTCCGCCGCCTGCAGGAAAACTCACAACTAAGGGGCCAGGAAAAAGCCTCTCAGGGTCCCGCCCCTTCAGTGAGGATCCTAAATTTACATCCCAAGTGTGGCC-CCATCAAAGACTGGAGCGACGTTCACTGAAATGATACAAGATCAGCAGGGGCGCAGGGCGCTGCGGCCCTCAGAATGCGGTGACATCGCCGCGTCGCGTCCCTTCCCCGACCTGCCCCAGGCGGACGCGGTGACGTGTGTTGGCCT----CGAGGCGGGAATACA
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    73786 952 +    231697 CCTAGGCCTGGCTGCCCCTCCCCAGCCAAACCTCCCAGGTCTTTTCTGTCCAAAGCCCTCCCCCTCTACCCAACCTTCAGCCCCTTCTTCTCAGG-CCATCAACTACGTTTTCTCCCTCAGCACTCGCCTTAGATCCCTGGACTTACCAACACACAGGCGATTTTCTCCGTGCAGACTTTAGGCGCCACTGCTGGGTCCTGAAAAGAAAGAGAAACGGCCCAGCGCGGTCGCTTGC-TGACTCAGGGCAGGGCTGCACTGGGCGCCCGCGTGCGTTTTCAAGTCTGCGGCCCGGAGTTCACTGCGAGGACTGGGATCACCCGTCACCCCGCCCTGGTCTACGGAAAACGAAACGTGTGTACTGATAAAGAAACGGAGTAACGGCGCTGCGGGCTGGGGAGGGCCGAGCTGCCTTCAGGCTTCTGGTCTGCAGCTGCGGGTCACTCACACCTG-CCGCTGTG-AAATGCAGACCCGCGGGGCAGGAATTCCGAGTCCGGGCTGGAGCGCGATCTGGAATCTGACTCGCTTGAAACAGCACCGCGGAGGATTCGGAGCCAGGTGAGTAGGAAAATGAGCTTCAGCCCCTTCCACGGGCCGCCCATGGATTCTAGGATCCATAAACGCTTCCAGCTGCTCCGCCACCCCAGGAAGGCAGCGTTCGCCTCTGGCCGGTTCTGATGGAAACGGGCTCTGCCGCCCGCAGGAAAACCCACAACTAAGAGGCCAGGAAAAAGCCTCCCAGGGTACCGCCACTTCAGTGAGGATCCT-AATTTAAGCCCCGAGTGTGGCCTCCATCAAAGACTGGAGTGACCTTCACTGAAATGATACAAGGTCAGC-AGTGCCCAGGGCGCTGCGGCTCACAGAATACGGTGACAGCGCTGCCTCGCGTCCCTTCCCTGACCTTCCCCAGGCAGACGCGGTGAAGTGTGTTGGTGTTGTGTGAGGCTGGAATACA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          64940 948 +    243043 TCTAGGCCTGGCTG-CCCTCCCCAAACAAATCCTTCAGGTCTTTTCTGTCCAAAGCCCTCCCCCTCTATCCCATCTCCAGCCTCTTCGCTTCAGGCCCATCAACGAGGCTTTCACCCTCAGCACTTGCATTACATTCCTGGACTTACCAGCATACAGGTGATTTTCTCCTCGCAGACTTTAGGCGCCACTGCTGGGTCCGGAAAAGAAAGAGAAACGTCCCAGCACGGTCGCTTGTGTAACTCAGGATGAGGCTGCGCTGGGCGCCCGGGCGCGTTTTCAAGTCTGTGGCCCGGAGTTCAGTGCGAGGACTGGGATCACCCGTCACCCCGCCTTGGTCTACGGAAAATGAAATGTGTTTACTGATATAGAAACGGAATAACGGCGCTGCGGGCTGGGGAGGGAGGAGCTGCCTTCAGGCTTCTGGTCTCCAGCTGCGGGTCACTCACACCTG-CCGCTGGG-AAATGCAGACCCGCGGGGCAGGAATTCCGAGTCCGGGCTGGAGCGCGATCTGGAATCTGACTCGCTTGAAACAGCACCGCGGTGGATTCGGAGCCGGTTGAGCTGAGAAATGAGCTCCAGCCCCTCCCACGGGCCGCCCATGGATTCCAGGATCCGAAAACGCTTCCTGCTGCTCCGTCTTCCCGGGAAAGCAGCGCCCGCCTCCGGGCCGTTCTGATGGAAAGGGGCTCCGCCTTCCGAAGGAAAACCCACAACTAACAGGCCAGGAAAAAGCCTCCCAGGGTCCCGCCCCTTCAGTGAGGATCCT-AATTTACTCCCCGAGTGTGGCC-CCATCAAAGACTGGAGCGAAGATCGCTGAAATGATCCAAGATCAGC-GGGGCCCAGGGCGCTGCGGCTCACGGAATCCCGTGATAGCGCTGCCTCGCGTCCCTTCCCTGACCTGCCCCAGGCGGACATGGTGACGTGTGTTGGCCT----CCAGGCTGGAATACA
i macNem1.NW_012013156v1       C 0 I 61
s manLeu1.NW_012107142v1          37596 948 -    735854 TCTAGGCCTGGCTG-CCCTCCCTAAACAAATCCCCCAGGTCTTTTCTGTCCAAAGCCCTCCCCCTCTATCCCATCTCCAGCCTCTTCTCTTCAGGCCCATCAACGACGCTTTCACTCTCAGCACTTGCGTTAGATTCCTGGACTTACCAGCACACAGGAAATTTTCTCCTCGCAGACTTTAGGCGCCACTGCTGAGTCCGGAAAAGAAAGAGAAACGTCCCAGCACGGTCGCTTGTGTAACTCAGGACGAGGCTGCGCTATGTGCCCGCGCGCTTTTTCAAGTCTGTGGCCCGGAGTTCACTGCGAGGACTGGGATCACCCGTCACCCCGCCCTGGTCTACGGAAAAAGAAATGTGTTTACTGATGTAGAAACTGAATAACGGCGCTGCGGGCTGGGGAGGGCGGAGCTGCCTTCAGGCTTCTGGTCTCCAGCTGCGGGTCACTCACACCTG-CCGCTGTG-AAATGCAGCCCCGCGGGGCAGGAATTCCGAGTCCGGGCTGGACCGCGATCTGGAATCTGACTCGCTTGAAACAGCACCGCGGCGGATTCGGAGCCGGGTGAGTAGGGAAATGCGCCTCAGTCCCTCCCACGGGCTGCCCACGGATTCCAGGATCTGAAAACGCTTCCTGCTGCTCCGTCTCCCCGGGAAGGCAGAGACCGCCTCTGGGTCGTTCTGATGGAAAGGGGCTCAGCCGTCCGAAGGAAAACCCACAACTAACAGGCCAGGAAAAAGCCTCCCAGGGTCCCGCCCCTTCAGTGAGGATCCT-AATTTACTCCCCGAGTGTGGCC-CCATCAAAGACTGGAGCGAAGGTCACTGAAATGATACAAGATCGGC-GGGGCCCAGAGCGCTGCGGCTCACGGAATCCGGTGATAGCGCTGCCTCGCGTCCCTTCCCTGACCTGCCCCAGGCGGACGCGGTGACGTGTGTTGGCCT----CCAGGCTGGAATACA
i manLeu1.NW_012107142v1       I 132 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=55522.000000
s hg38.chr6_GL000254v2_alt      1016043 83 +   4827813 CCGGGGATCAAGTGCAGAGAAGGGAGAAAGTAGGGAAGGATGGCTGGAGGGTGGGGGTGGGGGGAGCGTGTTGAAGAAAAAAG
s panTro5.chr6                 29978595 76 + 175400573 CCGGGGATCAAGTGCAGAGAATGGAGAAAGTAGGGAAGGATGGCTGTGGGGT-------GGGGGAGCGTGTTGAAGAAAAAAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30212282 76 + 173848474 CCGGGGATCAAGTGCAGAGAATGGAGAAAGTAGGGAAGGATGGCTGGGGGGT-------GGGGGAGCGTGTTGAAGAAAAAAC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6013199 81 +   6154872 CCGGGGATCAAGTGCAGAGAATGGAGAAAGTTGGGAAGGATGGCGGGGGGGGTGGGG--GGGGGAGCGTGTTGAAGAAAAAAG
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    74738 53 +    231697 GCGGGGGTCAAGAGCAGAGAATGGAGAAAGATGGGGTGAGTG----------------------------TTGAAGAAAGA--
i macFas5.chr4_KE145577_random C 0 C 0
s manLeu1.NW_012107142v1          38544 61 -    735854 -TGGGGATCGAAAGCAGAGAACGGAGAAAGGAGGGAAGAATG-----------------GGGGGGACGCTTCGAAGAAA----
i manLeu1.NW_012107142v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          65888 61 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=217142.000000
s hg38.chr6_GL000254v2_alt      1016126 137 +   4827813 GGAAGAGAGAGGAAGGAAAGAGGAGAAAAAAGGTGAAGAAGAGAATAACATTTAAAATATAGAGTTTTATTATTTCTAACTTTTATTTTTGGTTTTTATCTAGTTTTGGTATGTATGAATATTCTTAACATAGCTTT
s panTro5.chr6                 29978671 137 + 175400573 GGAAGAGAGAGGAAGGAAAGAGGAGAAAAAAGGTGAAGAAGAGAATAACATTTAAAATATAGAGTTTTATTATTTCTAACTTTTATTTTTGGTTTTTATCTAGTTTTGGTATGTATGAATATTCTTAACATACCTTT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30212358 137 + 173848474 GGAAGAGAGAGGAAGGAAAGAGGAGAAAAAAGGTGAAGAAGAGAATAACATTTAAAATATAGAGTTTTATTATTTCTAACTTTTATTTTTGGTTTTTATCTAGTTTTGGTATGTATGAATATTCTTAACATAGCTTT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6013280 137 +   6154872 GGAAGAGAGAGGAAGGAAAGAGGAGAAAAAAGGTGAAGAAGAGAATAACATTTAAAATATAGAGTTTTATTATTTCTAACTTTTATTTTTGGTTTTTATCTAGTTTTGGTATGTATGAATATTCTTAACATAGCTTT
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    74791 135 +    231697 --AAGGGAGAGGGAGAAAAGGGGAGGGAAAAGGTGAAGGTGAGAATAATATTTAAAAGATGTAGTTTTATTATTTCTAACTTTTATTTTTGCCCTTTTCCTAGTTTTGTTATTTATGAACATTTTAACCACAGCATT
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          65949 137 +    243043 GGAAGGGAGGGGGAGAAAAGGGGAGAGAAAAGGTGAAGGTGAGAATAATATTTGAAAGATGTAGTTTTATTATTTCTAACTTTTAATTTTGCCCTTTATCCAGTTTTGTTATTTATGAACATTTTTACCATAGTTTT
i macNem1.NW_012013156v1       I 61 I 86
s manLeu1.NW_012107142v1          38605 137 -    735854 GGAAGGGAGGGGGAGAAAAGGGGAGAGAAAAGGTGAAGCTGAGAATAATATTTGAAAGATGTAGTTTTATTATTTCTAACTTTTAATTTTGCCCTTTATCTAGTTTTGTTATTTATGAACATTTTTACCATAGCTTT
i manLeu1.NW_012107142v1       C 0 I 85
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=32732.000000
s hg38.chr6_GL000254v2_alt      1016263 55 +   4827813 ATCTCTGTCTCTCTCTCTGAATCTGTAAATATAC-----------------------------------AGTAATATATATACACACGTA
s panTro5.chr6                 29978808 55 + 175400573 ATCTCTGTCTCTCTCTCTGAATCTGTAAATATAC-----------------------------------AGTAATATATATACACACGTA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30212495 55 + 173848474 ATCTCTGTCTCTCTCTCTGAATCTGTAAATATAC-----------------------------------AGTAATATATATACACACGTA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6013417 55 +   6154872 ATCTCTGTCTCTCTCTCTGAATCTGTAAATATAC-----------------------------------AGTAATATATATACACACGTA
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    74926 81 +    231697 ----TTTTCTCCCTCTGTGAATCTGTAAATATACGGCTTATTATTCTTATTTCAGAGGCTGCGAGGTCAAGTAACAGAGA---ACATG--
i macFas5.chr4_KE145577_random C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e manLeu1.NW_012107142v1          38742 85 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          66086 86 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=101682.000000
s hg38.chr6_GL000254v2_alt      1016318 67 +   4827813 AGCCTCTACCTGCCGATGTGTCAGGCTGTGTCTCTTGGGCACAAAAACAAGGTTTTTGTTTTGTTTT
s panTro5.chr6                 29978863 67 + 175400573 AGCCTCTACCTGCCGATGTGTCAGGGTGTGTCTCTTGGGCACAAGAACAAGGTTTTTGTTTCGTTTT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30212550 67 + 173848474 AGCCTCTACCTGCCGATGTGTCAGGGTGTGTCTCTTGGGCACAAGAACAAGGTTTTTGTTTCGTTTT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6013472 67 +   6154872 AGCCTCTACCTGCCGATGTGTCAGGGTGTGTCTCTTGGGCACAAGAACAAGGTTTTTGTTTTGTTTT
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    75007 62 +    231697 AGTTTCTGCCTCCAGATGTGCCAGGGTGTGTCTCTTGGGTACAAGAACAAGGGTTTCGTTTT-----
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          66172 62 +    243043 AGCTTCTACCTCCAGATGTGCCAGGGTGTATCTCCTGGGTACAAAAATAAGGGTTTTGTTTT-----
i macNem1.NW_012013156v1       I 86 C 0
s manLeu1.NW_012107142v1          38827 67 -    735854 AGCTTCTACCTCCAGATGTGCCAGGGTGTATCTCTTGGGTACAAAAACAAGGGTTTTGTTTTGTTTT
i manLeu1.NW_012107142v1       I 85 I 241
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=37377.000000
s hg38.chr6_GL000254v2_alt      1016385 30 +   4827813 GTTTTACATAAGCAAAGTACAAATCTCAAA
s panTro5.chr6                 29978930 30 + 175400573 GTTTTACATAAGCAAAGTACAAATCTCAAA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30212617 30 + 173848474 GTTTTACATAAGCAAAGTACAAATCTCAAA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6013539 30 +   6154872 GTTTTACATAAGCAAAGTACAAATCTCAAA
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    75069 30 +    231697 GTTTTACAAAATCAAAGTACAAATCTCAAA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          66234 30 +    243043 GTTTTACAAAGTCAAAGTACAAACCTCAAA
i macNem1.NW_012013156v1       C 0 I 214
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e manLeu1.NW_012107142v1          38894 241 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=155090.000000
s hg38.chr6_GL000254v2_alt      1016415 218 +   4827813 GAAGAT-ATAttttaaaagccattttattgggacttgctttgcatacaatcaaatgtatctaaaatgtatctatttgaaatgcatagctcgttgtgt-------tttggctgttgtacacacccacatctccactaccacaatgaagatgtagaacatttccatcgtcctccaaagAACTGCTATGCAATACAATTTTATAGGGTCAATAAAAGAGGTAAGATCAG
s panTro5.chr6                 29978960 219 + 175400573 GAAGATAATAttttaaaagccattttattgggccttgctttgcatacaatcaaatgtatctaaaatgtatctatttgaaatgcatagctcgttgtgt-------tttggctgttgtacacacccacatctccactaccacaatgaagatgtagaacatttccatcatcctccaaagAACTGCTATGCAATACAATTTTATAGGGTCAATAAAAGAGGTAAGATCAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30212647 219 + 173848474 GAAGATAATAttttaaaagccattttattgggccttgctttgcatacaatcaaatgtatctaaaatgtatctatttgaaatgcgtagctcgttgtgt-------tttggctgttgtacacacccacatctccactaccacaatgaagatgtagaacatttccatcgtcctccaaagAAATGCTATGCAATACAATTTTATAGGGTCAATAAAAGAGGTAAGATCAG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6013569 208 +   6154872 GAAGATAATAttttaaaagccattttattgggacttgctttgcatacaatc-----------aaatgtatctatctgaaatgcatagctcgttgtgt-------tttggctgttgtacacacccacatctccactaccacaatgaagatgtggaacatttccatcgtcctccaaagAACTGCTATGCAATACAATTTTATAGGGTCAATAAAAGAGGTAAGATCAG
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    75099 210 +    231697 TAGGATAATAtttttaaa-ccgtt---ttggggcatactttgcatgcaat------------aaatgtatctatttgaaatgtacagctcattgagttttactctttggctgttttacacacccacgtatccactaccacaatgaagattaataacatttccatagtcccctaaagAACAGCCATGCGATAAAATTCCATGCAGTCGTTAAAAAGAGGACGATGAG
i macFas5.chr4_KE145577_random C 0 I 1
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e manLeu1.NW_012107142v1          38894 241 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          66264 214 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=1365.000000
s hg38.chr6_GL000254v2_alt      1016633 1 +   4827813 T
s panTro5.chr6                 29979179 1 + 175400573 T
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30212866 1 + 173848474 T
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6013777 1 +   6154872 T
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    75310 1 +    231697 T
i macFas5.chr4_KE145577_random I 1 C 0
s macNem1.NW_012013156v1          66478 1 +    243043 T
i macNem1.NW_012013156v1       I 214 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e manLeu1.NW_012107142v1          38894 241 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=45372.000000
s hg38.chr6_GL000254v2_alt      1016634 29 +   4827813 TTTAAGTATTGTTATGAGAAGATGTGTGC
s panTro5.chr6                 29979180 29 + 175400573 TTTAAGTATTGTTATGAGAAGATGTGTGC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30212867 29 + 173848474 TTTAAGTATTGTTATGAGAAGATGTGTGC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6013778 29 +   6154872 TTTAAGTATTGTTATGAGAAGATGTGTGC
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    75311 21 +    231697 TTCAA--------ATGAGAAGATCTGTGC
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          66479 29 +    243043 TTTAAGTATTGTTATGAGAAGATCTGTGC
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          39135 29 -    735854 TTTAAGTATTGTTATGAGAAGATCTGTGC
i manLeu1.NW_012107142v1       I 241 I 60
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=53417.000000
s hg38.chr6_GL000254v2_alt      1016663 57 +   4827813 GTCTCATACTTTTAACCATTTTTTAAAAGATGAGGATATACTGAATTATAA-----TGCCAG
s panTro5.chr6                 29979209 57 + 175400573 GTCTCATACTTTTAACCATTTTTTAAAAGATAAGGATATACTGAATTATAA-----TGCCAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30212896 57 + 173848474 GTCTCATACTTTTAACCATTTTTTAAAAGATAAGGATAAACTGAATTATAA-----TGCCAG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6013807 57 +   6154872 GTCTCATACTTTTAACCATTTTTTAAAAGATAAGGATATACTGAATTATAA-----TGCCAG
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    75332 57 +    231697 CCAGCCTATTTTTACCCATTTTTAAAAGGACAAGGATGTATGGAATTATAA-----TACCAG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          66508 60 +    243043 CCAGCCTACTTTTACCCATTTTTTAAAAGATAAGGATGTATGGA--TGTAAGGATGTACCAC
i macNem1.NW_012013156v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e manLeu1.NW_012107142v1          39164 60 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=56685.000000
s hg38.chr6_GL000254v2_alt      1016720 39 +   4827813 TAATACCACTTCCATAATGTATATTTTAAGT------AGGGAAA-A
s panTro5.chr6                 29979266 39 + 175400573 TAATACCACTTCCATAATGTATATTTTAAGT------AGGGAAA-A
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30212953 39 + 173848474 TAATACCACTTCCATAATGTATATTTTAAGT------AGGGAAA-A
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6013864 39 +   6154872 TAATACCACTTCCATAATGTATATTTCAAGT------AGGGAAA-A
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    75389 44 +    231697 TAATGTCACTTACATAATATATATTTTAAGTATATTAAGGGAAA--
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          66568 38 +    243043 TAATGCCACTTACATAATATATATTTTAAGT------AGGGAAA--
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          39224 39 -    735854 TAATGCCACTTACATAATATATATTTTAAGT------AGGGAAAA-
i manLeu1.NW_012107142v1       I 60 I 12
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=21589.000000
s hg38.chr6_GL000254v2_alt      1016759 25 +   4827813 ACCTGGAAGATTTCTCACCAAAGtt--
s panTro5.chr6                 29979305 23 + 175400573 ACCTGGAAGATTTCTCACCAAAG----
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30212992 23 + 173848474 ACCTGGAAGATTTCTCACCAAAG----
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6013903 23 +   6154872 ACCTGGAAGATTTCTCACCAAAG----
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    75433 25 +    231697 ACCCAGAGGATTACTCACCAAAA--TT
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          66606 25 +    243043 ACCCGGAGGATTACTCACCAAAA--TT
i macNem1.NW_012013156v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e manLeu1.NW_012107142v1          39263 12 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=182.000000
s hg38.chr6_GL000254v2_alt      1016784 2 +   4827813 tt
s macNem1.NW_012013156v1          66631 2 +    243043 TT
i macNem1.NW_012013156v1       C 0 I 30
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e manLeu1.NW_012107142v1          39263 12 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macFas5.chr4_KE145577_random    75458 0 +    231697 C
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I
e gorGor5.CYUI01015250v1        6013926 0 +   6154872 C
e panPan2.chr6                 30213015 0 + 173848474 C
e panTro5.chr6                 29979328 0 + 175400573 C

a score=67641.000000
s hg38.chr6_GL000254v2_alt      1016786 129 +   4827813 tttttttttttttttttttgagacagagtctagctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcctgggttcacgccattctcctgggttcacgccatcct
s panTro5.chr6                 29979328 125 + 175400573 ----tttttttttttttttgagacagagtctagctctgtcgcccaggagggagtgcagtggcgcgatctcggctcactgcaagctccgcctcctgggttcacgccattctcctgggttcacgccatcct
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30213015 122 + 173848474 -------ttttttttttttgagacagagtctagctctgtcgcccaggagggagtgcagtggcgcgatctcggctcactgcaagctccgcctcctgggttcacgccattctcctgGGTTCACGCCATCCT
i panPan2.chr6                 C 0 M 266
s gorGor5.CYUI01015250v1        6013926 125 +   6154872 ----ttgttttttttttttgagacagagtctagctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcctgggttcacgccattctcctgggttcacgccatcct
i gorGor5.CYUI01015250v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e manLeu1.NW_012107142v1          39263  12 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          66633  30 +    243043 I
e macFas5.chr4_KE145577_random    75458   0 +    231697 C
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=54793.000000
s hg38.chr6_GL000254v2_alt      1016915 222 +   4827813 cctgcctcagcctcccgagtagctgggactacagacgcccgccaccacactaattttttgta-tttttttgta---ttttttttttggtagagacggggtttcaccgtgttggccaggatagtctcgatctcctgacctcgtgatctgcccgcctcggcctcccaaagtgctgggattacagtcgtgagccaccacgcctggcctttttttttttttttttttttt
s panTro5.chr6                 29979453 220 + 175400573 cctgcctcagcctcccgagtagctgggactacggacgcccgccaccacactaattttttgtattttttttgtatttttttttttttggtagagacggggtttcaccgtgtgggccaggatagtctcgatctcctgacctcgtgatctgcccgcctgggcctcccaaagtgctgggattacagtcgtgagccaccgcgcccggcc------tttttgttttgttttg
i panTro5.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6014051 224 +   6154872 tctgcctcagcctcccgagtagctgggactacagacgcccgccaccacactaattttttgta-tttttttttt-ttttttttttttggtagagacggggtttcaccgtgttggccaggatagtctcgatctcctgaccttgtgatctgcccgcctcggcctcccaaagtgctgggattacagtcatgagccaccgcgcccggcctttttttttttttttttttttt
i gorGor5.CYUI01015250v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e manLeu1.NW_012107142v1          39263  12 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          66633  30 +    243043 I
e macFas5.chr4_KE145577_random    75458   0 +    231697 C
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I
e panPan2.chr6                 30213137 266 + 173848474 M

a score=159454.000000
s hg38.chr6_GL000254v2_alt      1017137 286 +   4827813 tttttctgagacggag-tttcgctcttgtcgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctccacctccagggttcaagtgattctcctgcctcagcctccctagtagctggaattacagtcactcgccaccacacccatctaattttttgtgtttttagtagagatggggtttcgccatgttggacaggctggtctcgaactcctgacctcaggtgatccacccgcctcagcctcccagagtgctgggattacaggcgtgagccactgagcc
s panTro5.chr6                 29979673 286 + 175400573 tttttctgagacggag-tttctctcttgtcgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctccacctccagggttcaagtgattctcctgcctcagcctccctagtagctggaattacagtcactcgccaccacacccatctaattttttgtgtttttagtagagatggggtttcgccatgttggacaggctggtctcaaactcctgacctcaggtgatccacccgcctcagcctcccagagtgctgggattacaggcgtgagccactgagcc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30213412 287 + 173848474 tttttctgagacggagttttcgctcttgtcgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctccacctccagggttcaagtgattctcctgcctcagcctccctagtagctggaattacagtcactcgccaccacacccatctaattttttgtgtttttagtagagatggggtttcgccatgttggacaggctgctctcaaactcctgacctcaggtgatccacccgcctcagcctcccagagtgctgggattacaggcgtgagccactgagcc
i panPan2.chr6                 M 266 C 0
s gorGor5.CYUI01015250v1        6014275 285 +   6154872 -ttttctgagtcggag-tttcgctcttgtcgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctccacctccaggtttcaagtgattctcctgcctcagcctccctagtagctggaattacagtcactcgccaccacacccatctaattttttgtgtttttagtagagatggggttttgccatgttggacaggctggtctcgaactcctgacctcaggtgatccacccgcctcagcctcccagagtgctgggattacaggcgtgagccactgagcc
i gorGor5.CYUI01015250v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e manLeu1.NW_012107142v1          39263  12 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          66633  30 +    243043 I
e macFas5.chr4_KE145577_random    75458   0 +    231697 C
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=10087.000000
s hg38.chr6_GL000254v2_alt      1017423 12 +   4827813 cTCACCAAAGTC
s panTro5.chr6                 29979959 12 + 175400573 cTCACCAAAGTT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30213699 12 + 173848474 cTCACCAAAGTT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6014560 12 +   6154872 cTCACCAAAATT
i gorGor5.CYUI01015250v1       C 0 C 0
s manLeu1.NW_012107142v1          39275 12 -    735854 CTCACCAAAATT
i manLeu1.NW_012107142v1       I 12 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          66633 30 +    243043 I
e macFas5.chr4_KE145577_random    75458  0 +    231697 C
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=33605.000000
s hg38.chr6_GL000254v2_alt      1017435 32 +   4827813 TTGACAGTGACTCCAGGGACTACGATAACTTG
s panTro5.chr6                 29979971 32 + 175400573 TTGACAGTGACTCCAGGGACTACAATAACTTG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30213711 32 + 173848474 TTGACAGTGACTCCAGGGACTACAATAACTTG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6014572 32 +   6154872 TTGACAGTGACTCCAGGGACTACAATAACTTG
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    75458 32 +    231697 TTGACAGGGAACCCAGGGACTGGGATAACTTT
i macFas5.chr4_KE145577_random C 0 C 0
s manLeu1.NW_012107142v1          39287 32 -    735854 TTGGCAGGGACCCTAGGGACTGTGGTAACGTT
i manLeu1.NW_012107142v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          66633 30 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=106541.000000
s hg38.chr6_GL000254v2_alt      1017467 58 +   4827813 GTGATTTTCACTTTCTCTGAAATGTTGGAATTTTATATTACAGTATTAACTTGGATTT
s panTro5.chr6                 29980003 58 + 175400573 GTGATTTTCACTTTCTCTGAAATGTTGGAATTTTATATTACAGTATTAACTTGGATTT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30213743 58 + 173848474 GTGATTTTCACTTTCTCTGAAATGTTGGAATTTTATATTACAGTATTAACTTGGATTT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6014604 58 +   6154872 GTGACTTTCACTTTCTCTGAAATGTTGGAATTTTATATTACAGTATTAACTTGGATTT
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    75490 58 +    231697 GTGACTTTCACTTTCTCTGAAATGCTGGAATTTTATATTACAGTATAAACTTGGATTT
i macFas5.chr4_KE145577_random C 0 I 1
s macNem1.NW_012013156v1          66663 58 +    243043 GTGACTTTCGCTTTCTCTGAAATGTTGGAATTTTATATTACAGTATAAACTCGGATTT
i macNem1.NW_012013156v1       I 30 I 227
s manLeu1.NW_012107142v1          39319 58 -    735854 GTGACTTTCGCTTTCTCTGAAATGTTGGAATTTTATATTACAGTATAAACTCGGATTT
i manLeu1.NW_012107142v1       C 0 I 236
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=182420.000000
s hg38.chr6_GL000254v2_alt      1017525 247 +   4827813 GGCTTggcccggtggcttgtacctgtaatttcagctctggaaggtgaggcagaattgcttgagaccaggagttcgaggctgcattgagctatgattgtgttactgcactccagcctgggtgacgaatggagacattgtttcaaaaaaagaaaaataaaTGCAATTAAAAATAAA---AATAAACCTGAATTTGTATGGAGGTTAAGGAAGAGTATATCTCAGTTTG-AAACATTATGAAGCTAAGCCCCAA
s panTro5.chr6                 29980061 247 + 175400573 GGCTTggcccggtggcttgtacctgtaatttcagctctggaaggtgaggcagaattgcttgagaccaggagttcgaggctgcattgagctatgattgtgttactgcactccagcctgggtgacaaatggagacattgtttcaaaaaaagaaaaataaaTGCAATTAAAAATAAA---AATAAACCTGAATTTGTATGGAGGTTAAGGAAGAGTATATCTCAGTTTG-AAACATTATGAAGCTAAGCCCCAA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30213801 247 + 173848474 GGCTTggcccggtggcttgtacctgtaatttcagctctggaaggtgaggcagaattgcttgagaccaggagttcgaggctgcattgagctatgattgtgttactgcactccagcctgggtgacaaatggagacattgtttcaaaaaaagaaaaataaaTGCAATTAAAAATAAA---AATAAACCTGAATTTGTATGGAGGTTAAGGAAGAGTATATCTCAGTTTG-AAACATTATGAAGCTAAGCCCCAA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6014662 247 +   6154872 GGCTTggcccggtggcttgtacctgtaatttcagctctggaaggtgaggcagaattgcttgagaccaggagttcgaggctgcattgagctatgattgtgttactgcactccagcctgggtgacaaatggagacattgtttcaaaaaaagaaaaataaaTGCAATTAAAAATAAA---AATAAACCTGAATTTGTATGGAGGTTAAGGAAGGGTATATCTCAGTTTG-AAACATTATGAAGCTAAGCCCCAA
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    75549 238 +    231697 Agccaggaacgatggctcaggcatgtaa--tcagctctggaagctga---aggataccttgagcccaggagtttgaggctgcagtgagctaggatctgaccactacactccagcctgggtgacagaaagagatcttgtctcaaaaatgaataaagaaa---aTTTAAAAATAAAAATAATAAACTTGAATTTGTATGGTGGTTAAGAAAA---ATATTT--GTTTGAAAATATTATAAAGGTAAGCCACAC
i macFas5.chr4_KE145577_random I 1 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e manLeu1.NW_012107142v1          39377 236 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          66721 227 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=211357.000000
s hg38.chr6_GL000254v2_alt      1017772 142 +   4827813 ACCCAAATAGTTAGAGATTTTTAAATACCAAAGTGTTAATTAAAACTCAACACCAGAAACTCTCTTTTAAGAGTATCCTTCATATTTTCATGGCATTGACTCTTTCTT--AGTGTCTTTGACAGAAATGTTTTTAGTGGAGTAG
s panTro5.chr6                 29980308 142 + 175400573 ACCCAAATAGTTAGAGATTTTTAAATACCAAAGTGTTAATTAAAACTCAGCACCAGAAACTCTCTTTTAAGAGTATCCTTCATATTTTCATGGCATTGACTCTTTCTT--AGTGTCTTTGACAGAAATGTTTTTAGTGGAGTAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30214048 142 + 173848474 ACCCAAATAGTTAGAGATTTTTAAATACCAAAGTGTTAATTAAAACTCAGCACCAGAAACTCTCTTTTAAGAGTATCCTTCATATTTTCATGGCATTGACTCTTTCTT--AGTGTCTTTGACAGAAATGTTTTTAGTGGAGTAG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6014909 138 +   6154872 AACCAAA----TAGAGATTTTAAAATACCAAAGTGTTAATTAAAACTCAACACCAGAAACTCTCTTTTAAGAGTATCCTTCATATTTTCATGGCATTGACTCTTTCTT--AGTGTCTTTGATAGAAATGTTTTTAGTGTAGTAG
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    75787 142 +    231697 ACCCAAATAGTTACAGGATTTTAAAAACCATAGTGTTAATTAAAACCCAACTCCAGAAACTCACTTTTAAGGGGA--CTTCATATTTTCATGTCATTAAATCTTTTTCAAAGTGTCTTTGATAGAGCTGTTTTCAGTGCAGTAG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          66948 142 +    243043 ACCCAAATAGTTACAGGATTTTAAAAGCCGAAGTGTTAATTAAAACCCAACTCCAGAAACTCACTTTTAAGGGGA--CTTCATATTTTCAGGTCATTAAATCTTTCTCAAAGTGTCTTTGATAGAGCTGTTTTTAGTGTAATAG
i macNem1.NW_012013156v1       I 227 C 0
s manLeu1.NW_012107142v1          39613 142 -    735854 ACCCAAATAGTTACAGGATTTTAAAAACCGAAGTGTTAATTAAAACCCAACTCCACAAACTCACTTTTAAGGGGA--CTTCATATTTTCAGGTCATTAAATCTTTCTCAAAGTGTCTTTGATAGAGTTGTTTTTAGTGCAGTAG
i manLeu1.NW_012107142v1       I 236 I 31
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=20349.000000
s hg38.chr6_GL000254v2_alt      1017914 27 +   4827813 AGATACATGTAATAAAATTTACAGAAG-----
s panTro5.chr6                 29980450 27 + 175400573 AGATACGTGTAATAAAATTTACAGAAG-----
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30214190 27 + 173848474 AGATACGTGTAATAAAATTTACAGAAG-----
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6015047 27 +   6154872 AGATACGTGTAATAAAATTTACAGAAG-----
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    75929 31 +    231697 AGAGATATGTAAC-TATTTTACAAAAGGGGCG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          67090 31 +    243043 GGAGATGTGTAAC-AATTTTACAAAAGGGACG
i macNem1.NW_012013156v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e manLeu1.NW_012107142v1          39755 31 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=54489.000000
s hg38.chr6_GL000254v2_alt      1017941 29 +   4827813 GGCTATAATAAAGAGGGAAACGCAAAATC
s panTro5.chr6                 29980477 29 + 175400573 GGCTGTAATAAAGAGGGAAACGCAAAATC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30214217 29 + 173848474 GGCTGTAATAAAGAGGGAAACGCAAAATC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6015074 29 +   6154872 GGCTATAATAAAGAGGGAAACGCAAAATC
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    75960 29 +    231697 GGCTATAATAAAAAGGGAAACGCAAAATC
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          67121 29 +    243043 GGCTGTAATAAAAAGGGAAACGCAAAATC
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          39786 29 -    735854 GGCTGTAATAAAAAGGGAAACGCAAAATC
i manLeu1.NW_012107142v1       I 31 I 17
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=8944.000000
s hg38.chr6_GL000254v2_alt      1017970 19 +   4827813 GAGTCTGACACAGGAGACC--
s panTro5.chr6                 29980506 19 + 175400573 GAGTCTGACACAGGAGACC--
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30214246 19 + 173848474 GAGTCTGACACAGGAGACC--
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6015103 19 +   6154872 GAGTCTGACACAGGAGACC--
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    75989 13 +    231697 --------CAGTGGGGACACG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          67150 13 +    243043 --------CAGTGGGGACACG
i macNem1.NW_012013156v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e manLeu1.NW_012107142v1          39815 17 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=294202.000000
s hg38.chr6_GL000254v2_alt      1017989 184 +   4827813 CTGTTCCATTTATACTCAAAGCAACTTTGAAAACTGCGCCGTCATGGTGTCTTTGGGTTGAGACAAAGTCGAAGCAAATTTTGTTCCTAGAGTATTGATTTCCCCTTTCCAATGGCTAAAGGCTTTCGGAACTAGTCTGAAAACTCAGGCTCTGACTTT-GGATCTAAAGAAGTGTCAAGAATGT
s panTro5.chr6                 29980525 184 + 175400573 CTGTTCCATTTATACTCAAAGCAACTTTGAAAACTGCACCGTCATGGTGTCTTTGGGTTGAGACAAAGTCGAAGCAAATTTTGTTCCTAGAGTATTGATTTCTCCTTTTCAATGGCTAAAGGCTTTCGGAACTAGTCTGAAAACTCAGGCTCTGACTTT-GGATCTAAAGAAGTGTCAAGAATGT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30214265 184 + 173848474 CTGTTCCATTTATACTCAAAGCAACTTTGAAAACTGCACCGTCATGGTGTCTTTGGGTTGAGACAAAGTCGAAGCAAATTTTGTTCCTAGAGTATTGATTTCTCCTTTTCAATGGCTAAAGGCTTTCGGAACTAGTCTGAAAACTCAGGCTCTGACTTT-GGATCTAAAGAAGTGTCAAGAATGT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6015122 184 +   6154872 CTGTTCCATTTATACTCAAAGCAACTTTGAAAACTGCGCCGTCATGGTGTCTTTGGGTTGAGACAAAGTCGAAGCGAATTTTTTTCCTAGAGTATTGATTTCCCCTTTCCAATGGCTAAAGACTTTCGGAACTAGTCTGAAAACTCAGGCTCTGACTTT-GGATCTAAAGAAGTGTCAAGAATGT
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    76002 183 +    231697 CTGTACCATTTATTTTCAAAGCACGTTTGAAAACTGGGTTGCTATAGTGTCTTTGGGTTGAGACAAAGTCGAGGAAAATCTTGTTCCTGGAGTGTTGATTTCCTTTTTCCAAGGGCCAAAGCCTTTCGAAGCAAGTCTAAAAACTCAGG--CTGACTTTCAGATCTGAAGAAATCTCAAGAATGT
i macFas5.chr4_KE145577_random C 0 I 4
s macNem1.NW_012013156v1          67163 183 +    243043 CTGTCCCATTTATTTTCAAAGCACGTTTGAAAACTGCGCTGCTATAGTGTCTTTGGGTTGAGACAAAGTCGAGGAAAATCTTGTTCCTGGAGTGTTGATTTCCTTTTTCCAAGGGCCAAAGCCTTTCGAAGCAAGTCTAAAAACTCAGG--CTGACTTTCGGATCTGAAGAAATCTCAAGAATGT
i macNem1.NW_012013156v1       C 0 I 44
s manLeu1.NW_012107142v1          39832 183 -    735854 CTGTCCCATTTATTTTCAAAGCACGTTTGAAAACTGCACTGCTATAGTGTCTTTGGGTTGAGACAAAGTCGAGGAAAATCTTGTTCCTGGAGTGTTGATTTCCTTTTTCCAAGGGCCAAAGCCTTTCGAAGCAAGTCTAAAAACTCAGG--CTGACTTTCGGATCTGAAGAAATCTCAAGAATGT
i manLeu1.NW_012107142v1       I 17 I 81
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=26600.000000
s hg38.chr6_GL000254v2_alt      1018173 38 +   4827813 GCGGGCAGTGGCGCTGCATGAATCTAGCGGGTCTGGGC
s panTro5.chr6                 29980709 38 + 175400573 GCGGGCAGTGGCGCTGCATGAATCTAGCGGGTCTGGGC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30214449 38 + 173848474 GCGGGCAGTGGCGCTGCATGAATCTAGCGGGTCTGGGC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6015306 38 +   6154872 GCGGGCAGTGGCGCTGCATGAATCTAGCGGGTCTGAGC
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    76189 38 +    231697 GTGGACCGCAACGCTCTAAGAATCCAGCTCTCTTGGGC
i macFas5.chr4_KE145577_random I 4 I 2
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e manLeu1.NW_012107142v1          40015 81 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          67346 44 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=33100.000000
s hg38.chr6_GL000254v2_alt      1018211 37 +   4827813 GATGCTCTCTCCGGCTCTACCCAGTAGCAATTGCGGT
s panTro5.chr6                 29980747 37 + 175400573 GATGCTCTCTCCGGCTCTACCCAGTAGCAATTGCGGT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30214487 37 + 173848474 GATGCTCTCTCCGGCTCTACCCAGTAGCAATTGCGGT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6015344 37 +   6154872 GATGCTCTCTCCGGCTCTACCCAGTAGCAATTGCGGT
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    76229 37 +    231697 CAAGCTCTCTGGGTCTTCACTCAGTGACAATGGCCCG
i macFas5.chr4_KE145577_random I 2 C 0
s macNem1.NW_012013156v1          67390 37 +    243043 CAAGCTCTCTGGAGCTTCACCCAGTGACAATGGCCAG
i macNem1.NW_012013156v1       I 44 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e manLeu1.NW_012107142v1          40015 81 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=320619.000000
s hg38.chr6_GL000254v2_alt      1018248 203 +   4827813 AAGGACAGGACGCAGCGAAATTGTACCAGTGAGTCAGAGGCCAAAGGAGGAATCCTGGCCCAACAGCGCAGAGTGTGCTTTGTTAAGGTGGGGATCAGGTAGCGGAGGGAAGGCAAGGACACTC--GGAATAAATGGCAGAGGAAGAAGGCGCGCGAGGGAAGACCCAAAGCCTTCCGACCCCTCCTTCCTTTCCTTCCTGTTGG
s panTro5.chr6                 29980784 205 + 175400573 AAGGACAGGACGCAGCGAAATTGTACCAGTGAGTCAGAGGCCAAAGGAGGAATCCTGGCCCAACAGCGCAGAGTGTGCTTTGTTAAGGTGGGGATGAGGTAGCGGAGGGAAGGCAAGGACACTCAGGGAATAAATGGCAGAGGAAGAAGGCGCGCGAGGGAAGACCCAAAGCCTTCCGACCCCTCCTTCCTTTCCTTCCTGTTGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30214524 205 + 173848474 AAGGACAGGACGCAGCGAAATTGTACCAGTGAGTCAGAGGCCAAAGGAGGAATCCTGGCCCAACAGCGCAGAGTGTGCTTTGTTAAGGTGGGGATGAGGTAGCGGAGGGAAGGCAAGGACACTCAGGGAATAAATGGCAGAGGAAGAAGGCGCGCGAGGGAAGACCCAAAGCCTTCCGACCCCTCCTTCCTTTCCTTCCTGTTGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6015381 205 +   6154872 AAGGACAGGACGCAGCGAAATTGTACCAGTGAGTCATAGGCCAAAGGAGGAATCCTGGCCCAACAGCGCAGAGTGTGCTTTGTTAAGGTGGGGATGAGGTAGCGGAGGGAAGGCAAGGACACTCAGGGAATAAATGGCAGAGGAAGAAGGCGCGCGAGGGAAGACCCAAAGCCTTCCGACCCCTCCTTCCTTTCCTTCCTGTTGG
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    76266 202 +    231697 AAGGACAGGACACAGTGAAATGGCACCAGTGAGTCAGAGGCCAAAGGAGGATTTCTGGCCCAAGCGCGCAGGATGTGCTTTGTCTTAATGAGGTTGCGGTAGTGGAGCAGAGGCAAGGACACTC--AGAATAAATGGCAGA-GAAAAAGGCGCGCTAGGGAGGATCCGAAGCCTTCAGACTTCTCCTTCCTCTCCTTCCAGTTGG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          67427 203 +    243043 AAGGACAGGACACAGTGAAATGGCACCAGTGAGTCAGAGGCCAAAGGAGGATTTCTGGCCAGAGGGCGCAGGATGTGCTTTGTCATAGTGAGGTTGGGGTAGCGGAGCAGAGGCAAGGACACTCTGGGAATAAGTGTCAGA-GAAAAAGGCGCGCTAGGAAGGATCCAAAGCCTTTA-ACTTCTCCTTCCTTTCCTTCCAGTTGG
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          40096 203 -    735854 AAGGACAGTACACAGTGAAATGGCACCAGTGAGTCAGAGGCCAAAGGAAGATTTCTGGCCAGAGGGCGCAGGATGTGCTTTGTCATAGTGAGGTTGGGTTAGCGGAGCAGAGGCAAGGACACTCTGGGAGTAAGTGGCAGA-GAAAAAGGCGCGCTAGGAAGGATCCAAAGCCTTTA-ACTTCTCCTTCCTTTCCTTCCAGTTGG
i manLeu1.NW_012107142v1       I 81 I 102
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=55560.000000
s hg38.chr6_GL000254v2_alt      1018451 70 +   4827813 GGTTGAAGGGCACC--------------------AGCCGGTGGGGTGCAGAGAATGGGAACAACTAGAGAGGGCGT-----GCCCCACAC-AGGCG
s panTro5.chr6                 29980989 70 + 175400573 GGTTGAAGGGCACC--------------------AGCCGGTGGGGTGCAGAGAATGGGAACAACTAGAGGGGGCGT-----GCCCCACAC-AGGCG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30214729 70 + 173848474 GGTTGAAGGGCACC--------------------AGCCGGTGGGGTGCAGAGAATGGGAACAACTAGAGGGGGCGT-----GCCCCACAC-AGGCG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6015586 70 +   6154872 GGTTGAAGGGCACC--------------------AGCCGGTGGGGTGCAGAGAATGGGAACAACTAGAGGGGGCGT-----GCCCCACAC-AGGCG
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    76468 92 +    231697 -A--AGGTGGGACCAACATGGTCCCTGAAGGAGAGGTCCTTGGGGTGCAGAGAATGGGATCACTGCAACGGGGCGTTGCGAGCCCCACACAAGGC-
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          67630 79 +    243043 -ATTGGAGGGGACCAGCAT---------------GGTCCGTGGGGTGCAAAGAATGGGGTCACTGCAAAGGGGCGTTGCGCGCCCCACACAAGGC-
i macNem1.NW_012013156v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2762654 395 -   3067355 I
e manLeu1.NW_012107142v1          40299 102 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=11364.000000
s hg38.chr6_GL000254v2_alt      1018521 8 +   4827813 TCCCGGCT
s panTro5.chr6                 29981059 8 + 175400573 TCCCGGCT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30214799 8 + 173848474 TCCCGGCT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6015656 8 +   6154872 TCCCGGCT
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    76560 8 +    231697 TTCTGGCA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          67709 8 +    243043 TTCTGGCA
i macNem1.NW_012013156v1       C 0 C 0
s colAng1.NW_012115566v1        2763049 8 -   3067355 TCCTGGCT
i colAng1.NW_012115566v1       I 395 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          40299 102 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=853632.000000
s hg38.chr6_GL000254v2_alt      1018529 423 +   4827813 CCCTTCTCCCAGCTACTACTGATGAGTTCAAACTAGGAGGACACTAAGACGTGTCTTTTGCAAGGTAGACTCCTTATCTCGCACTCCGTCTGGTTTTCTAAATCCATCCTAATGAAACACAAAAACCAAGAGCCAAATTCTGCGTGTGACTTTTCTGACCACTATAAGGTCCT-CCCCCTCCCCATTTCTTGCGTGCTCCCC---------------------CCTTGCCTCGCCCCCTCCCCTTTGTCTCCACTT-----------------------CCCCGCTCCTAAGTATCTCCTGCTTTCTTCAGAGGACTT---CTCATGAAGTACAGAC---TCCTCCACCTCCAGGAAAAAGAGACAAAGTCCACTGAGAAGGACCTGAGGGATGCCTGTGACCCCGCCCCTGAGGTCAGCCCCTCCCGCATCGCTGGCTTTGGCTCTGTAtgtgt------gtgtgtgtgtgtgtgtgtg
s panTro5.chr6                 29981067 422 + 175400573 CGCTTCTCCCAGCTACTACTGATGAGTTCAAACTAGGAGGACACTAAGACGTGTCTTTTGCAAAGTGGACTCCTTATCTCGCACTCTGTCTGGTTTTCTAAATCCATCCTAATAAAACACAAAAACCAAGAGCCAAATTCTGCGTGTGACTTTTCTGACCACTATAAGGTCCT-CCCCCTCCCCATTTCTTGCGTGCTCCCC---------------------CCTTGCCTCGCCCCCTCCCCTTTGTCTCCACTTCCCCATCCTTGTCCATCTCTGGACCCCGCTCCTAAGTATCTCCTGCTTTCTTCAGAGGACTT---CTCATGAAGTACAGAC---TCCTCCACCTCCAGGAAAAAGAGACAAAGGCCACTGAGAAGGACCTGAGGGATGCCTGTGACCCCGCCCCTGAGGTCAGCCCCTCCCGCATCGCTGGCTTTGGCTCtgta------------------------------
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30214807 422 + 173848474 CCCTTCTCCCAGCTACTACTGATGAGTTCAAACTAGGAGGACACTAAGACGTGTCTTTTGCAAAGTAGACTCCTTATCTCGCACTCTGTCTGGTTTTCTAAATCCATCCTAATAAAACACAAAAACCAAGAGCCAAATTCTGCGTGTGACTTTTCTGACCACTATAAGGTCCT-CCCCCTCCCCATTTCTTGCGTGCTCCCC---------------------CCTTGCCTCGCCCCCTCCCCTTTGTCTCCACTTCCCCATCCTTGTCCATCTCTGGACCCCGCTCCTAAGTATCTCCTGCTTTCTTCAGAGGACTT---CTCATGAAGTACAGAC---TCCTCCACCTCCAGGAAAAAGAGACAAAGGCCACTGAGAAGGACCTGAGGGATGCCTGTGACCCCGCCCCTGAGGTCAGCCCCTCCCGCATCGCTGGCTTTGGCTCtgta------------------------------
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6015664 423 +   6154872 CCCTTCTCCCAGCTACTACTGATGAGTTCAAACTAGGAGGACACTAAGACGTGTCTTTTGCAAAGTAGACTCCTTATCTCGCACTCTGTCTGGTTTTCTAAATCCATCCTAATGAAACACAAAAACCAAGAGCCAAATTCTGCGTGTGACTTTTCTGACCACTATAAGGTCCT-CCCCCTCCCCATTTCTTGCGTGCTCCCC---------------------CCTTGCCTCGCCCCCTCCCCTTTGTCTCCACTT-----------------------CCCCGCTCCTAAGTATCTCCTGCTTTCATCAGAGGACTT---CTCATGAAGTACAGAC---TCCTCCACCTCCAGGAAAAAGAGACAAAGTCCACTGAGAAGGACCTGAGGGATGCCTGTGACCCCGCCCCTGAGGTCAGCCCCTCCCGCATCGCTGGCTTTGGCTCTGTAtgtgt------gtgtgtgtgtgtgtgtgtg
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    76568 448 +    231697 CCCTTCTCCCAGCTATTACTGATGAGTTCAAACTAGGAGGAGATGAAGACTTGTCCTTTGCAATGTAGACTCCATATCTCGCAATCCGGCTGGTGTGCTAAATCCATCTTAATAAAACACAAAAACCAAGAACCAAATTCTGCGTGTGATATTTCTGACCGCTAGAAGGTCCT-CCCCCTCCCCATTCCTCGCGTGCTCTCT---------------------TCTTGCCCCGCCCCCTCCGCTTTGTCTCCACTTTCCCATCCTTGTCCATCTCTGGACCCCGCTCCTGAGTATCTCCCC-CTTCTTCAGAGGACGTCCCCTCATGGACTACAGAC---TCCTCCACCTCCAGGAAAAAGAGACAAAGGCCACTGGGAGGGACCTGAGACACTCCTGTTACTCCGCCCCTGAAGTCAGCCCGCCCCACAATGCTCCTTCAGGCtgtgtgtgtgt------gtgtgtgcctgtgtgtgtg
i macFas5.chr4_KE145577_random C 0 I 34
s macNem1.NW_012013156v1          67717 449 +    243043 CCCTTCTCCCAGCTACTCCTGATGAATTCAAACTAGGAGGAGACTAAGACTCGTCCTTTGCAAAGTAGACTCCGTATCTCGCGCTTCGGCTGGTTTACTAAATCCATCTTAATAAAACATAAAAACCAAGAACCAAATTCTGCGTGTGATATTTCTGATCGTTAGAAGGTCCT-CCCCCTCCCCATTCCTCGCGTGCGCTCT---------------------TCTTGCCCCGCCCCCTCCAATTTGTCTCCACTTTCCCATCCCTGCCCATCTCTGGACCCCAGTCCTGAGTATCTCCCCTCTTCTTCAGAGGACGTCCCCTCATGGAGTACAGAC---GCCTCCACTTCCAGGGAAAAGAGACAAAGGCCACTGAGAGGGACCTGAGACACTCCTGTTACTCCGCCCCTGAAGTCAGCCCATCCCACAACGCTCCTTCAGGCtgtgtgtgtgt------gtgtgtgtgtgtgtgtgtg
i macNem1.NW_012013156v1       C 0 I 145
s manLeu1.NW_012107142v1          40401 451 -    735854 CCCTTCTCCCAGCTACTCCTGATGAGTTCAAACTAGGAGGAGACTAAGACTCGTCCTTTGCAATGTAGACTCCGTATCTCTCGCTTCGGCTGGTTTACTAAATCCATCT---TAAAACACAAAAACCAAGAACCAAATTCTGCGTGTGATATTTCTGACCGCTAGAAGGTCCT-CCCCCTCCCCATTCCTCGCGTGCTCGCT---------------------TCTTGCCCCGCCCCCTCCACTTTGTCTCCACTTCCCCATCCCTGTCCATCTCTGGACCCCGCTCCTGAGTATCTCCCCCTTTCTTCAGAGGACTTCCCCTCATGTAGTACAGAC---TCCTCCACCTCCAGGAAAAAGAGACAAAGGCCTCTGAGAGGGACCTGAGACACTCCTGTTACT-CGCCCCTGAAGTCAGCCCATCTCACAACGCTCCTTCAGGCtgtgtgtgtgtgtgtgagtgtgtgcctgtgtgtgtg
i manLeu1.NW_012107142v1       I 102 I 34
s colAng1.NW_012115566v1        2763057 456 -   3067355 CCCTTCTCCCAGCTACTAGTGATGAATTCAAACTAGGAGGAGACCAAGACGTGTCCTTTGCAAAGTAGACTCCTTATCTCCCACTCCGGCTGGTTTACTAAAACCATCCTAATTAAACACAAAAACCAAGAAAGTAATTCTGCATGTGACTTCTCTGACCCCTAGAAGGtcctaccccttccccgttcctcgcctgctccctccctccgtccctcgcctgctccctccctccgtcccctcctctttgtctccacctcctcatccttgtccctctccAGACCCCATTCCTAAGTATCTCCCACCTTCTTCAGAGGACTTCCCCTCATGGAGTACAGACGATTCCTCCACCTCAGGGAAAAATAGACAAAGACCACTGAGAGGGACCTGAGAGACTCCTGTTGCTCCACCCCTGAGGTCAGCCCCTCTGCCAGCGTTAGCTCTGGCTGTGTGTGTGT------G------------------
i colAng1.NW_012115566v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=7029.000000
s hg38.chr6_GL000254v2_alt      1018952 13 +   4827813 tgtttgtgtgtgC
s gorGor5.CYUI01015250v1        6016087 13 +   6154872 tgtgtgtgtgtgt
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    77050 13 +    231697 cgaatgtgtgtgc
i macFas5.chr4_KE145577_random I 34 I 50
s manLeu1.NW_012107142v1          40886 13 -    735854 tgaatgtgtgtgc
i manLeu1.NW_012107142v1       I 34 I 30
s colAng1.NW_012115566v1        2763513 13 -   3067355 TGTACGGATGTGC
i colAng1.NW_012115566v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          68166 145 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I
e panPan2.chr6                 30215229  0 + 173848474 C
e panTro5.chr6                 29981489  0 + 175400573 C

a score=1151.000000
s hg38.chr6_GL000254v2_alt      1018965 12 +   4827813 GCGCGCGCTTGT
s panTro5.chr6                 29981489  3 + 175400573 ---------tgt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30215229  3 + 173848474 ---------tgt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6016100  8 +   6154872 gtgtg----tgt
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    77113 12 +    231697 gtgtacgtgtgt
i macFas5.chr4_KE145577_random I 50 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2763526  0 -   3067355 C
e manLeu1.NW_012107142v1          40899 30 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          68166 145 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=16787.000000
s hg38.chr6_GL000254v2_alt      1018977 16 +   4827813 GTGTGTGTCTGTGTGA
s panTro5.chr6                 29981492 16 + 175400573 gtgtgtgtctgtgtgA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30215232 16 + 173848474 gtgtgtgtctgtgtgA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6016108 16 +   6154872 gtgtgtgtctgtgtgA
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    77125 16 +    231697 gtgtgtgtttgtgtgt
i macFas5.chr4_KE145577_random C 0 C 0
s manLeu1.NW_012107142v1          40929 16 -    735854 gtgtgtgtctgtgaga
i manLeu1.NW_012107142v1       I 30 I 33
s colAng1.NW_012115566v1        2763526  4 -   3067355 ----------GTGA--
i colAng1.NW_012115566v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          68166 145 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=-1802.000000
s hg38.chr6_GL000254v2_alt      1018993 5 +   4827813 ATGT-T
s panTro5.chr6                 29981508 5 + 175400573 ATGT-T
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30215248 5 + 173848474 ATGT-T
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6016124 5 +   6154872 ATGT-T
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    77141 5 +    231697 gtgtg-
i macFas5.chr4_KE145577_random C 0 C 0
s colAng1.NW_012115566v1        2763530 2 -   3067355 --AT--
i colAng1.NW_012115566v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          40945 33 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          68166 145 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=2355.000000
s hg38.chr6_GL000254v2_alt      1018998 6 +   4827813 AATGGA
s panTro5.chr6                 29981513 6 + 175400573 AATGGA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30215253 6 + 173848474 AATGGA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6016129 6 +   6154872 AATGGA
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    77146 5 +    231697 AATGG-
i macFas5.chr4_KE145577_random C 0 C 0
s manLeu1.NW_012107142v1          40978 5 -    735854 AATGG-
i manLeu1.NW_012107142v1       I 33 C 0
s colAng1.NW_012115566v1        2763532 2 -   3067355 ---GA-
i colAng1.NW_012115566v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          68166 145 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=750001.000000
s hg38.chr6_GL000254v2_alt      1019004 402 +   4827813 GAGTCAAAGTGCTAAACTCGGCATCTATCATAGGAAACTTCCTCACCTTGGCACTGCATGCAAGAGTCAGCGTATTTATGTGCACCTGTGCCTTTATTTCAGGAGCTGGAACAATTTTATTCATGAGATCCGCAGAGTGCCAACGCCCCCACCCCAGAAAGCTTAAGGGACTCTGCATTAGAGAAGAGGGTGAGATTGGAGGGGCCCCTGACTCCAAATCTCCTGATCCCCCCCCCACAAAGAGATGCTGA-AAAAAAGTGCTGGACAATCCATTCCCTCCTGGGAC-CAGAGAGGAAGCCAGAGGCACCGTGGATGTCAAATTCCAGCAAAGAAA--CAATTACAGCAAAATCTCCATGTCACATTTTTAAGCTTACACAATGGCTCAAATAGAACCAGCATCAA
s panTro5.chr6                 29981519 401 + 175400573 GAGTCAAAGTGCTAAACTCGGAATCTATCATAGGAAACTTCCTCACCTTGGCACTGCATGCAAGAGTCAGCGTATTTATGTGCACCTGTGCCTTTATTTCAGGAGCTGGAACAATTTTATTCATCAGATCCGCAGAGTGCTGACGCCCCCACCCCAGAAAGCTTAAGGGACTCTGCATTAGAGAAGAGGGTGAGATTGGAGGGGCCCC-GACTCCAAATCTCCTGATTCCCCCTCCACAAAGAGATGCTGA-AAAAAAGTGCTGGACAATCCATTCCCTCCTGGGAC-CAGACAGGAAGCCAGAGGCACCGTGGATGTCAAATTCCAGCAAAGAAA--CAATTACAGCAAAATCTCCATGTCACATTTTTAAGCTTACACAATGGCTCACATAGAACCAGCATCAA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30215259 402 + 173848474 GAGTCAAAGTGCTAAACTCGGCATCTATCATAGGAAACTTCCTCACCTTGGCACTGCATGCAAGAGTCAGCGTATTTATGTGCACCTGTGCCTTTATTTCAGGAGCTGGAACAATTTTATTCATCAGATCCGCAGAGTGCTGACGCCCCCACCCCAGAAAGCTTAAGGGACTCTGCATTAGAGAAGAGGGTGAGATTGGAGGGGCCCCTGACTCCAAATCTCCTGATTCCCCCTCCACAAAGAGATGCTGA-AAAAAAGTGCTGGACAATCCATTCCCTCCTGGGAC-CAGACAGGAAGCCAGAGGCACCGTGGATGTCAAATTCCAGCAAAGAAA--CAATTACAGCAAAATCTCCATGTCACATTTTTAAGCTTACACAATGGCTCACATAGAACCAGCATCAA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6016135 400 +   6154872 GAGTCAAAGTGCTAAACTCGGCATCTATCATAGGAAACTTCCTCACCTTGGCACTGCATGCAAGAGTCAGCGTATTTATGTGCACCTGTGCCTTTATTTCAGGAGCTGGAACAATTTTATTCATCAGATCCGCAGAGTGCCAACGCCCCCACCCCAGAAAGCTTAAGGGACTCTGCATTAGAGAAGAGGGTGAGATCGGAGGGGCCCCTGACTCCAAATCTCCTGATCCCCTCTCCACAAAGAGATGCTGA-AAAAAAGTGCTGGACAATCCATTCCCTCCTCGGAC-CAGACAGGAAGCCAGAGGCACCGTGGATGTCAAATTCCAGCAAAGAAA--CAATTACAGCAAAATCTCCATGTCACATTTTTAAGCTTACACAATGGCTCAAATAGAACCAGCATC--
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    77151 383 +    231697 GAGTCAAAGTGCTAAACTTGGCATT-----CAGGAAACCTCCCCACCTTGGCACTGCATGCAGGAGTGAGTG---TTATGTGCACCTGTGCTTTTTGTTCAGGAGCTGGGACAATTATATTAATCAGATGTGCAGAGAGGCAAGGCCCCCTGACTGGAAAGCATTAG--------------AGAGGAGGGTGAGATTGGAGGATTCCCTGACTCCAAGTCTCCTGACCCCTCTTACACACAAGGATCTTGAAAAAAAACTGCAGGACACTAAATTCTCTCCGGGGAC-CAACAGGGAAGCCAGAGCCACCGTGCATGTCAAATTCCATCAAAGAAAAACCATTATAGCAAAATTTCCATGTCACATTTTTAAGCCTACACAAAGGCTCACACAGAACCAATATCAA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          68311 382 +    243043 GAGTCAAAGTGCTAAACTTGGCATC-----CAGGAAACCTCCCCACCTTGGCACTGCACGCAGGAGTCAGTG---TTATGTGCACCTGTGCTTTTATTTCAGGAGCTGGGACAATTATATTAATCAGATGTGCAGAGAGCCAAGGCCCCAC-ACTGGAAAGCGTTAG--------------AGAGGAGGGTGAGATTGGAGGGGCCCCTGACTCCAAGTCTCCTGATCCCTCTTACACACAAGGATCTTGAAAAAAAAGTGCAGGACACTCCATTCTCTCCTGGGAC-TGACAGGGACGCCAGAGCCACCATGTATGTCAAATTTCATCAAAGAAAAAAAATTATTGCAAAATTTCCATGTCACAGTTTTAAGCCTGCACAATGGCTtaaatagaacaaatatcaa
i macNem1.NW_012013156v1       I 145 C 0
s manLeu1.NW_012107142v1          40983 383 -    735854 GAGTCAAAGTGCTAAACTTGGCATC-----CAGGAAACCTCCCCACCTTGGCACTGCACGCAGGAGTCAGTG---TTATGTGCACCTGTGCTTTTATTTCAGGAGCTGGGACAATTATATTAATCAGATGTGCAGAGAGCCAAGGCCCCCACACTGGAAAGCGTTAG--------------AGAGGAGGGTGAGATTGGAGGGTTCCCTGACTCCAAGTCTCCTGATCCCTCTTACACACAGGGATCTTGACAAAAAAGTGCAGGACACTCCATTCTCTCCTGGGAC-CGACAGGGAAGCCAGAGCCACCGTGCATGTCAAATTCCATCAAAGAAAAAAAATTATAGCAAAATTTCCATGTCACACTTTTAAGCCTGCACAATGGCTCAAATAGAACCAATACCaa
i manLeu1.NW_012107142v1       C 0 I 97
s colAng1.NW_012115566v1        2763534 393 -   3067355 GAGTCAAAGTGGTAAACCTGCCATC-----TAGGAAACTT---CACCTTGGCACTGCATGAAAGAGTTGGTG---TTTTGTGCACCTGTGCCTTTGTTTCAGGAGCTGGGACAATTATATTCATCAGATCGGCAGAGTGCTAACGCCTCAT-CCCAGAAAGCTTTAGGAATTCTGCATTAAAGAGGAAGAGAAGACTGGAGGAGCCCCTGACTCCAAGTTACCAGATCTCTCCTACACAAAGGAATACTGA-GAAAAAGTGCAGGACACTCCATTCCCTCCGGGGACAAGACAGCGAAGCCAGAGCCATTGTGCATGTCAAATTCCATTTAAGAAATGCCATTATAGCAAAATCTCCGTGTCACATTTTTAAGTTCACACAATGGCTCAAATAGAACTGACATAAA
i colAng1.NW_012115566v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=118189.000000
s hg38.chr6_GL000254v2_alt      1019406  98 +   4827813 AAA------------TCCCGAATTCCTGGTTCAGGTGGGATCACTGAAGTCTGCTGTTAGGCTTGGCAGGACCTGCAGGTAGAAAGAATGGCATCTCTATTTAGAGCTGC
s panTro5.chr6                 29981920  98 + 175400573 AAA------------TCCCGAATTCCTGGTTCAGGTGGGATCACTGAAGTCCGCTGTTAGGCTTGGCAGGACCTGCAGGTAGAAAGAATGGCATTTCTATTTAGAGCTGC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30215661  98 + 173848474 AAA------------TCCCGAATTCCTGGTTCAGGTGGGATCACTGAAGTCCGCTGTTAGGCTTGGCAGGACCTGCAGGTAGAAAGAATGGCATTTCTATTTAGAGCTGC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6016535  97 +   6154872 -AA------------TCCCGAATTCCTGGTTCAGGTGGGATCACTGAAGTCCGCTGTTAGGCTTGGCAGGACCTGCAGGTAGAAAGAATGGCATCTCTATTTAGAGCTGC
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    77534  93 +    231697 -AA------------CAACAAGTTTCTAGCTCAGGTGAGATCACTGAAGTTGACTGCCAGGCA-TAAGGAAACTGCAGGTAT---AAAGGACATCTCTAGCTAGGGCTGC
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          68693 106 +    243043 -aaaaataaataaataaataaatTCCTAGCTCAGGTGAGATCACTGAAGTTGGCTGTCAGGTGTTAAGGAAGCTGCAGGTAT---AAAGGACATCTCTAGCTAGGGCTGC
i macNem1.NW_012013156v1       C 0 C 0
s colAng1.NW_012115566v1        2763927  97 -   3067355 -AA------------AGACAAATTCCTAGCTCAGGTGAGATCACCAAAGTTGGCTGCCAGGCATGATGGATACTACCGGTAGAAAAAAGAACACCTCTATTTAGGGCTGC
i colAng1.NW_012115566v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          41366  97 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=357788.000000
s hg38.chr6_GL000254v2_alt      1019504 199 +   4827813 AGCCCAGTAGCCCCTGCTTCTT-GGGCTCTTTGAAAAGACCCTCTCCCTTCAGCAGTGCACAGTGAGGCCATTTCTGGGGAAGAAATGTAGACTCTCCTTGGG----GGAGGTTTTTATACTTAGTTACTGACTTTGCATTCGTTGACTTCATCTTTGAACATCTTACAGTTACATAATTTGCTTTGACTCTAAGTGTAGAACA
s panTro5.chr6                 29982018 199 + 175400573 AGCCCAGTAGCCCCTGCGTCTT-GGGCTCTTTGAAAAGACCCTCTCCCTTCAGCAGTGCACAGTGAGGCCATTTCTGGGGAAGAAAGGTAGACTCTCCTTGGG----GGAGGTTTTTATACTTAGTTACTGACTTTGCATTCGTTGACTTCATCTTTGAACATCTTACGGTTACGGAATTTGCTTTGACTCTAAGTGTAGAACA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30215759 199 + 173848474 AGCCCAGTAGCCCCTGCTTCTT-GGGCTCTTTGAAAAGACCCTCTCCCTTCAGCAGTGCACAGTGAGGCCATTTCTGGGGAAGAAAGGTAGACTCTCCTTGGG----GGAGGTTTTTATACTTAGTTACTGACTTTGCATTCGTTGACTTCATCTTTGAACATCTTACGGTTACGGAATTTGCTTTGACTCTAAGTGTAGAACA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6016632 199 +   6154872 AGCCCAGTAGCCCCTGCTTCTT-GGGCTCTTTGAAAAGACCCTCTCCCTTCAGCAGTGCACAGTGAGGCCATTTCTGGGGAAGAAATGTAGACTCTCCTTGGG----GGAGGTTTTTATACTTAGTTACTGACTTTGCATTCGTTGACTTCATCTTTGAACATCTTACAGTTACGTAATTTGCTTTGACTCTAAGTGTAGAACA
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    77627 203 +    231697 AGCCCAATTGCCCCTGCATCTTAGGGCCCCTGGAAAGGACCCTCTCCATTCAATAGCGCAGGGTGAGGACATTT-TGGGGGAGAAATGCAGACTCTCCTTAGACCCCTGGGGTTTGTACATTTACTTTCTGACTTTTTAGGTGTTGTCTTCATTTTTGAACAAACTGCAGTTACATAATTTGCTCTGACTTTAAGTGTAAAACA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          68799 197 +    243043 AGCCCAGTCGCCCCAGCATCTTAGGGCCCCTGGAAAGGACCTTCTCCATTCAACAGTGCAGGGTGTGGATATTT-TGGGGGAGAAATGTAGACTGTCCTTAGACCCCTGCGGTTTGTACATTCACTGTCTGACTTTTTAGGTGTTGACTTCATTTTTGAACAAATTACAGTTACATAATTTG------CTTTAAGTGTAAAACA
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          41463 203 -    735854 AGCCCAATCGCCCCTGCATCTTAGGGCCCCTGGAAAGGACCCTCTCCATTCAATAGTGCAGGGTGTGGATATTT-TGGGGGAGAAATGTAGACTGTCCTTAGACCCCTAGGGTTTGTACATCCACTGTCTGACTTTTTAGGTGTTGACTTCATTTTTGAACAAATTACAGTTACATAATTTGCTTTAACTTTAAGTGTAAAACA
i manLeu1.NW_012107142v1       I 97 C 0
s colAng1.NW_012115566v1        2764024 199 -   3067355 AGCCCAATTGTCCCTGCATCTTAGGGCACCTTGAAAGGATCCTCTC----CAGTGGTGCACAGCGAGGCCATTT-CTGGGGAGAAATGTATATTCCCCTTGGACTCCTGAGATTTTTACACTTACTTGCAGACTTTGCGGATGTTAATCTCATCTTTGAACATCTTACAGTTAAGTAATTTCCTTTGACTCTAAGTGTAGAACA
i colAng1.NW_012115566v1       C 0 I 1068
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=97425.000000
s hg38.chr6_GL000254v2_alt      1019703 65 +   4827813 AGGAACTGTTCCTGAAGCAGAAAACTAAGGGTTGGTGACCTGCACTGTCACCCCTCTCCATGGTG
s panTro5.chr6                 29982217 65 + 175400573 AGGAACTGTTCCTGAAGCAGAAAACTAAGGGTTGGTGACCTGCACTGTCACCCCTCTCCATGGTG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30215958 65 + 173848474 AGGAACTGTTCCTGAAGCAGAAAACTAAGGGTTGGTGACCTGCACTGTCACCCCTCTCCATGGTG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6016831 65 +   6154872 AGGAACTCTTCCTGAAGCAGAAAACTAAGGGTTGGTGACCTGCACTGTCACCCCTCTCCGTGGTG
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    77830 65 +    231697 GGAAAATGTTCCTGAAACAGGAAACAAGGGCCAAGTGACCTGTACTGTCACCCCCCTCTGTGCCT
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          68996 65 +    243043 GGAAAATATTCCTGAAACAGAAAGCAAGGGCCAGGTGACCTGCACTGTCACCCCTCTCTGTGGCT
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          41666 65 -    735854 AGAAAATATTCCTGAAACAGGAAGCAAGGGCCAGGTGACCTGCACTGTCACCCCTCTCTGTGGCT
i manLeu1.NW_012107142v1       C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2764223 1068 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=622294.000000
s hg38.chr6_GL000254v2_alt      1019768 321 +   4827813 CTCTGATGCAATAAAATTGTGAGCCAAC-AAATCCATGGATAGGTAAACAGTAAA--CCATTTCAGCAAATGTTTCAGATGCTCCTTCGTGCCTAGCAATGTGCTAGCTTTACCCCAGCCTTAACATTCTAAAGTTTATATTTTCCTTGGTGTTGTTTTTAAAATAATTCATGTATATTTATTACCATGGGTTTGTTGCTGTAAACTCCTGGGAATGAACTGTAGAATTAAGTTAAGTAAATAAATGTGTGATTCtccattgacttattgctaacaccatcttaaatat---ttgaccccaaatccaatcacttctcactcctctac
s panTro5.chr6                 29982282 321 + 175400573 CTCTGATGCAATAAAATTGTGAGCCAAC-AAATCCATGGATAGGTAAACAGTAAA--CCATTTCAGCACATGTTTCAGATGCTCCTTCATGCCTAGCAATGTTCTAGATTTACCCTAGCCTTAACATTCTAAAGTTTATATTTTCCTTGGTGTTGTTTTTAAAATAATTCATGTATATTTATTACCATGGGTTTGTTGCTGTAAACTCCTGGGAATGAACTGTAGAATTAAGTTAAGTAAATAAATGTGTGATTCtccattgacttattgctaacaccatcttaaatat---ttgaccccaaatccaatcacttctcacttctctac
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30216023 321 + 173848474 CTCTGATGCAATAAAATTGTGAGCCAAC-AAATCCATGGATAGGTAAACAGTAAA--CCATTTCAGCACATGTTTCAGATGCTCCTTCATGCCTAGCAATGTTCTAGCTTTACCCCAGCCTTAACATTCTAAAGTTTATATTTTCCTTGGTGTTGTTTTTAAAATAATTCATGTACATTTATTACCATGGGTTTGTTGCTGTAAACTCCTGGGAATGAACTATAGAATTAAGTTAAGTAAATAAATGTGTGATTCtccattgacttattgctaacaccatcttaaatat---ttgaccccaaatccaatcacttctcacttctctac
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6016896 321 +   6154872 CTCTGATGCAATAAAATTGTGAGCCAAC-AAATCCATGGATAGGTAAACAGTAAA--CCATTTCAGCAAATGTTTCAGATGCTCCTTCGTGCCTAGCAATGTTCTAGCTTTACCCCAGCCTTAACATTCTAAAGTTTATATTTTCCTTGGTGTTGTTTTTAAAATAATTCATGTATATTTATTACCATGGGTTTGTTGCTGTAAACTCCTGGGAATGAACTGTAGAATTAAGTTAAGTAAATAAATGTGTGATTCtccattgacttattgctaacaccatcttaaatat---ttgaccacaaatccaatcacttctcaagcctctac
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    77895 322 +    231697 CCCTGATGCAATAAAATTGTGAGCCAAC-AAATCCATGGCTAGGTAAACAGTAAAGTCAATTTTGGCAAATGTTTCAGAGGTTCCTTCTTGCCTAGTAGTGTTCTAGCTTTACCCCAGCCTTAATATTTT-AAGTCTATACTTTCCTAGCTGTTGGTTTTTAAATAACACATGTATATTTATTA-TTTGG--TTGTTGCAATAAGCCATCTGGAATCAACTGTGGAATGAAGTTCAGTAAATAAATGAGTGGTTCTCTATTAAATAACTGCTAAGAccatctgaaaaatgtattaaccccaaatccaatcacttcacagtcctctac
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          69061 324 +    243043 CCCTGATGCAATAAAATTGTGAGCCAAC-AAATCCATGGCTAGGTAAACAGTCAACTCCATTTCAGCAAATGTTTCAGATGTTCCTTCTTGCCTAGCAATGTTCTATCTTTACTACCGCTTTAATATTTT-AAGTCTATCGTTTCCTAACTGTTGGTTTTTAAATAATTCATGTATATTTATTA-ATTAGGTTTATTGCAGTAAGCTACCTGGAATCAATTGTGGAATGAAGATCGGTAAATAAATGTGTGGTTCTCTATTAAATAACTGCTAAGAccatctgaaaaatgtattaaccccaaatccaatcacttcacgctcctctac
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          41731 324 -    735854 CCCTGATGCAATAAAATTGTGAGCCAAC-AAATCCATGGCTAGGTAAACAGTCAACTCCATTTCAGCAAATGTTTCAGCGGTTCCTTCTTGCCTAGCAATGTTCTATCTTTACCACCGCTTTAATATTTT-AAGTCTATCTTTTCGTAACTGTTGGTTTTTAAATGATTCATGTATATTTATTA-ATTAGGTTTATTGCAGTAAGCTACCTGGAATCAATTGTGGAATGAAGATCGGTAAATAAATGTGTGGTTCTCTATTAAATAACTGCTAAGAccatctgaaaaatgtattaaccccaaatctaatcacttcacagtcctctac
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2765291 326 -   3067355 CTCTGATGCAGTTAAATTGTAAGCCAACAAAATCCATGGCTAGGTAAACAGTAAActccatttcagtgaatgtttgaggtgttctctcttgcctagtagtgttctagctttaccccagccttcatatttt-aagtttttattttccttgatgttgaattttaagtaattcatatatatttattacattggatttgttatggtaagcgacctggaatcaactgtggaattaggttaagtaaataaacatgtgattctgcattaaattactgctaacaccaccctaaaaatctattaacctcaaatccaatcacttctcactcctctac
i colAng1.NW_012115566v1       I 1068 I 17709
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=289598.000000
s hg38.chr6_GL000254v2_alt      1020089 183 +   4827813 tacttta-ccccagagccaatcctctctaggatagtaaatcagatgggccttccagctgggctgcctgctgcttctcacacctgctgtccatcacccatgcaacaggcagagcgagcctttcaaatgggaattacggcacatcctcaccatcacatcccacagacactccatcctcttcctttc
s panTro5.chr6                 29982603 183 + 175400573 tacttta-ccccagagccaatcctctctaggatagtaaatcagacgggccttccacctgggctgcctgctgcttctcacacctgctgtccgtcacccatacaacaggcagagtgagcctttcaaatgggaattacggcacatcctcaccatcacatcccacagacactccatcctcttcctttc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30216344 183 + 173848474 tacttta-ccccagagccaatcctctctaggatagtaaatcagacgggccttccacctgggctgcctgctgcttctcacacctgctgtccgtcacccatacaacaggcagagtgagcctttcaaatgggaattacggcacatcctcaccatcacatcccacagacactccatcctcttcctttc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6017217 183 +   6154872 tacttta-ccccagagccaatcctctctaggatagtaaatcagatgggccttccagctgggctgcctgctgcttctcacacctgctgtccatcacccatacaacaggcagagtgagcctttcaaatgggaattacggcacatcctcaccatcacatcccacagacactccatcctcttcctttc
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    78217 182 +    231697 tgcctcctcgccagagcc-atcctctgtaggatagtaaaccagaagggccttccagctgggctgcctgctgcctctcatgaa-gctttccaccacccacacaacaggcagagtgaacctttcaaatgggaattagagcacatcctcaacaccacgtcccagaaacgctccagcctcttcccttc
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          69385 182 +    243043 tgcttcctccccagagcc-atcctctgtaggatagtaaaccagaagggccttccagttgggctgcctgtggcctctcatgca-gctgtccatcacccacacaacaggcagagtgaacctttcaaataggaattagagcacatcctcaacaccacttcccagagaaactccagcctcttcccttc
i macNem1.NW_012013156v1       C 0 I 13130
s manLeu1.NW_012107142v1          42055 182 -    735854 tgcttcctccccagagcc-atcctctgtaggatagtaaaccagaagggcattccagctgggctgcctgtggcctctcacaca-gctgtccatcacccacacaacaggcagagtgaacctttcaaatgggaattagagcacatcctcaacaccacgtctcagagatactccagcctcttcccttc
i manLeu1.NW_012107142v1       C 0 I 15504
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2765617 17709 -   3067355 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=86251.000000
s hg38.chr6_GL000254v2_alt      1020272 120 +   4827813 ttagtgcaatgaaatcccagtctcccaccatttcctactagcccctcaacacagggcatc---------tgtggcctcatcccactactctcaatagagcttgctggtctccattcacaccagcctctt
s panTro5.chr6                 29982786 120 + 175400573 ttagtgcaatgaaatcccagtctcccaccatttcctactagcccgtcaacacagggcatc---------tgtggcctcatcccactactctcaatagagctctctggtctccactcacaccagcctctt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30216527 120 + 173848474 ttagtgcaatgaaatcccagtctcccaccatttcctactagcccctcaacacagggcatc---------tgtggcctcatcccactactctcaatagagctctctggtctccactcacaccagcctctt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6017400 120 +   6154872 ttagtgcagtgaaatcccagtctcccaccattttctactagcccctcaacacagggcatc---------tgtggcctcatcccactactctcaatagagctcgctggtctccactcactccagcctctt
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    78399 108 +    231697 ---------------------ctctcaccatttcctatcagcccctcatcacagggcctctctggccattgtggcctcatcccaccagcctcagcccagctcactcatctccactcgcaccagtctctt
i macFas5.chr4_KE145577_random C 0 C 0
e otoGar3.GL873550             16740038 56338 -  18854210 I
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2765617 17709 -   3067355 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=13018.000000
s hg38.chr6_GL000254v2_alt      1020392 17 +   4827813 GTCACTGCTCTGTTCTT
s panTro5.chr6                 29982906 17 + 175400573 GTCACTGCTCTGTTCTT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30216647 17 + 173848474 GTCACTGCTCTGTTCTT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6017520 17 +   6154872 GTCACTGCTCTGTTCTT
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    78507 16 +    231697 gtcactgctcca-tcct
i macFas5.chr4_KE145577_random C 0 C 0
s otoGar3.GL873550             16796376 12 -  18854210 GTTACCCCTCTG-----
i otoGar3.GL873550             I 56338 C 0
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2765617 17709 -   3067355 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=3710.000000
s hg38.chr6_GL000254v2_alt      1020409 3 +   4827813 GTC
s panTro5.chr6                 29982923 3 + 175400573 GTC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30216664 3 + 173848474 GTC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6017537 3 +   6154872 GTC
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    78523 3 +    231697 gtc
i macFas5.chr4_KE145577_random C 0 C 0
s saiBol1.JH378364                52375 3 +    187130 GTT
i saiBol1.JH378364             N 0 C 0
e otoGar3.GL873550             16796388 0 -  18854210 C
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2765617 17709 -   3067355 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e chlSab2.chr17                29096013 39832 -  71996105 I
e cerAty1.NW_012002711v1         647757 43832 +    766320 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e rheMac8.chr4                 30187800 30651 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=3276.000000
s hg38.chr6_GL000254v2_alt      1020412 1 +   4827813 T
s panTro5.chr6                 29982926 1 + 175400573 T
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30216667 1 + 173848474 T
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6017540 1 +   6154872 T
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30218451 1 + 172585720 T
i rheMac8.chr4                 I 30651 C 0
s macFas5.chr4_KE145577_random    78526 1 +    231697 t
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         691589 1 +    766320 T
i cerAty1.NW_012002711v1       I 43832 C 0
s chlSab2.chr17                29135845 1 -  71996105 T
i chlSab2.chr17                I 39832 C 0
s saiBol1.JH378364                52378 1 +    187130 T
i saiBol1.JH378364             C 0 C 0
e otoGar3.GL873550             16796388 0 -  18854210 C
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2765617 17709 -   3067355 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=16005.000000
s hg38.chr6_GL000254v2_alt      1020413 3 +   4827813 CTG
s panTro5.chr6                 29982927 3 + 175400573 CTG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30216668 3 + 173848474 CTG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6017541 3 +   6154872 CTG
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30218452 3 + 172585720 CTG
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    78527 3 +    231697 ctg
i macFas5.chr4_KE145577_random C 0 I 11544
s cerAty1.NW_012002711v1         691590 3 +    766320 CTG
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29135846 3 -  71996105 CTG
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2783326 3 -   3067355 CTG
i colAng1.NW_012115566v1       I 17709 C 0
s saiBol1.JH378364                52379 3 +    187130 CTG
i saiBol1.JH378364             C 0 C 0
s otoGar3.GL873550             16796388 3 -  18854210 CTG
i otoGar3.GL873550             C 0 C 0
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=1302.000000
s hg38.chr6_GL000254v2_alt      1020416 1 +   4827813 G
s panTro5.chr6                 29982930 1 + 175400573 G
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30216671 1 + 173848474 G
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6017544 1 +   6154872 G
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30218455 1 + 172585720 A
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002711v1         691593 1 +    766320 A
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29135849 1 -  71996105 A
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2783329 1 -   3067355 G
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364                52382 1 +    187130 A
i saiBol1.JH378364             C 0 C 0
s otoGar3.GL873550             16796391 1 -  18854210 G
i otoGar3.GL873550             C 0 C 0
e aotNan1.NW_018509740v1         393362 16316 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=2464652.000000
s hg38.chr6_GL000254v2_alt      1020417 517 +   4827813 CTTAGAGCTACTTCCTGCTATGGTCCTTGGACTTGTGATGTGCAAGAAG---TTCTCAGGTATGGGAGGGACTAGAATGATGGCTTTGCCCCATCTCACATGTAGGGATCCCACTGCTCTTGGGGGATTTGCTGAGTCACTTCTCCCTGTTTCTGCTGGGGCTGGGGATGGTTAACCCAGTCAAGCCACACACCCTGAGAGGAAACCAGGTAGACAGGCTGACTGACAAGGAGGGCACTGCCT-GTCAAGTGGCCAATGACCCC-AGTCAGAAGAGGTGAAGGGTGAGAGAG--GAGGCTGCTGGGAACCAGAAGCTTGGCAGCCAGGAAGACTGAGAACAATCAGGCTGACAGTAGAG--------------------------------GCTGTTCACTCTAAGCCCCAGGGTGCGGGGGAGGGTCCTTTACACC---------------AGGGAGCTTCAGGTCTCGTGACTGTTTCTGGGCTCTGTACTCTCCTGATCCTCCATGAGGATTTTAAACAGT-GAGATAAGGTATCC-AGGGCCCCAGGAA--TCTGA----------------ATTACCTTTACCAAA
s panTro5.chr6                 29982931 549 + 175400573 CTTAGAGCTACTTCCTGCTATGGTCCTTGGACCTGTGATGTGCAAGAAG---TTCTCAGGTATGGGAGGGACTAGAATGATGGCTTTGCCCCATCTCACATGTAGGGATCCCACTGCTATTGGGGGATTTGCTGAGTCACTTCTCCCTGTTTCTGCTGGGGCTGGGGATGGTTAACCCAGTCAAGCCACACACCCTGAGAGGAAACCAGGTAGACAGGCTGACTGACAAGGAGGGCACTGCCT-GTCAAGTAGCAAATGACCCC-AGTCAGAAGAGGTGAAAGGTGAGAGAG--GAGGCTGCTGGGAACCAGAAGCTTGGCAGCCAGGAAGACTGAGAACGATCAGGCTGACAGTAGAGGCCAGAGGTTGCAGACCCTGGGAGTCAGCTGTGCTGTTCACTCTAAGCCCCACGGTGCGGGGGAGGGTCCTTTACACC---------------AGGGAGCTTCAGGTCTCGTGACTGTTTCTGGGCTCTGTACTCTCCTGATCCTCCATGAGGATTTTAAACAGT-GAGATAAGGTATCC-AGGGCCCCAGGAA--TCTGA----------------ATTACCTTTACCAAA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30216672 549 + 173848474 CTTAGAGCTACTTCCTGCCATGGTCCTTGGACCTGTGATGTGCAAGAAG---TTCTCAGGTATGGGAGGGACTAGAATGATGGCTTTGCCCCATCTCACATGTAGGGATCCCACTGCTATTGGGGGATTTGCTGAGTCACTTCTCCCTGTTTCTGCTGGGGCTGGGGATGGTTAACCCGGTCAAGCCACACACCCTGAGAGGAAACCAGGTAGACAGGCTGACTGACAAGGAGGGCACTGCCT-GTCAAGTGGCAAATGACCCC-AGTCAGAAGAGGTGAAGGGTGAGAGAG--GAGGCTGCTGGGAACCAGAAGCTTGACAGCCAGGAAGACTGAGAATGATCAGGCTGACAGTAGAGGCCAGAGGTTGCAGACCCTGGGAGTCAGCTGTGCTGTTCACTCTAAGCCCCATGGTGCCGGGGAGGGTCCTTTACACC---------------AGGGAGCTTCAGGTCTCGTGACTGTTTCTGGGCTCTGTACTCTCCTGATCCTCCATGAGGATTTTAAACAGT-GAGATAAGGTATCC-AGGGCCCCAGGAA--TCTGA----------------ATTACCTTTACCAAA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6017545 549 +   6154872 CTTAGAGCTACTTCCTGCTATGGTCCTTGGACCTGTGATGTGCAAGAAG---TTCTCAGGTATGGGAGGGACTAGAATGATGGCTTTGCCCCATCTCACATGTAGGGATCCCACTGCTATTGGGGGATTTGCTGAGTCACTTCTCCCTGTTTCTGCTGGGGCTGGGGATGGTTAACCCAGTCAAGCCACACACCCTGAGAGGAAACCAGGTAGACAGGCTGACTGACAAGGAGGGCACTGCCT-GTCAAGTGGCTAATGACCCC-AGTCAGAAGAGGTGAAGGGTGAGAGAG--GAGGCTGCTGGGAACCAGAAGCTTGGCAGCCAGGAAGACTGAGAACGATCAGGCTGACAGTAGAGGCCAGAGGTTGCAGACCCTGGGAGTCAGCTGTGCTGTTCACTCTAAGCCCCAGGGTGCGGGGGAGGGTCCTTTACACC---------------AGGGAGCTTCAGGCCTCGTGACTGTTTCTGGGCTCTGTACTCTCCTGATCCTCCATGAGGATTTTAAACAGT-GAGGTCAGGTATCC-AGGGCCCCAGGAA--TCTGA----------------ATTACCTTTACCAAA
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30218456 549 + 172585720 CTTAGAGCTACTTCCTGTTCTAGTCCTTGGAACTGTGATGTGCAAGAAG---TTCTCAGGTATGGGAGGCACTAGAATGATGGTTTTGCCCCATCTCATGTGTAGGGATCCCACTGCTATTGGGGGATTTGCCCAGTCACTTCTTCCTGTTCCTGGTGGGGCTGGAGATAGTGAACCCAGTCAAGCCACAAACCCTGAGAGGGAACCAGGCAAACAGGCAGACTGACAAGGAGGGCACTGCCT-GTCAAGTGGCCAACGGCCCC-GATCAGAAGAGGTGAAGGGTGAGAGAG--GAGGCTGCTGGGAACCAGAAGCTTGGCAGCCAGGAAGGCTGGGAAAGTTCAGTCTGACATTAGAGGATGGAGGCTGGAGACTCTGGGAGTCAGCTGTGCTGTTTGCTCTGAGCCGCAGGGTGCAGGGGAGGGTCCTTTACACC---------------AGGGAGCTTCAGGCCTCATGACTGTTTCTGGGCTCTGTACTCCCCTGATCCTCCATGAGAATTTTAAAGAGT-GAGATAAGGGATCC-AGGGCCCCAGGAA--TCGTA----------------ATCACTTTTACCAAA
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002711v1         691594 549 +    766320 CTTAGAGCTACTTTCTGTTCTAGTCCTTGGAACTGTGATGTGCAAGAAG---TTCTCAGGTATGGGAGGCACTAGAATGATGGTTTTGCCCCATCTCATGTGTAGGGATCCCACTGCTATTGGGGGATTTGCCCAGTCACTTCTTCCTGTTCCTGGTGGGGCTGGAGATGGTGAACCCAGTCAAGCCGCAGAACCTGAGAGGGAACCAGGCAAACAGGCAGACTGACAAGGAGGGCACTGCCT-GTCAAGTGGCCAACGACCTT-GATCAGAAGAGGTGAAGGGTGAGAGAG--GAGGCTGCTGGGAACCAGAAGCTTGGCAGCCAGGAAGACTGGGAACGTTCAGGCTGACATTAGAGGATGGAGGCTGGAGATTCTGGGAGTCAGCTGTGCTGTTTGCTCTGAGCCCCAGGGTGCAGGGGAGGGTCCTTTACACC---------------AGGGAGCTTCAGGCCTCATGACTGTTTCTGGACTCTGTACTCCCCTGATCCTCCATGAGAATTTTAAAGAGT-GAGATAAGGGATCC-AGAGCCCCAGGAA--TCGGA----------------ATTACTTTTACCAAA
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29135850 549 -  71996105 CTTAGAGCTACTTCGTGTTCTAGTCCTTGGAACTGTGATGTGCAAGAAG---TTGTCAGCTATGGGAGGCACTAGAATGATGGTTTTGCCCCATCTCATGTGTAGGGATCCCACTGCTATTGGGGGATTTGCCCAGTCACTTCTTCCTGTTCCTGGTGGGGCTGGAGATAGTGAACCCCGTCAAGCCACAAACCCTGAGAGGGAACCAGGCAAACAGGCGGACTGACAAGGAGGGCACTGCCT-GTCAAGTGGCCAACGGCCCC-GATCAGAAGAGGTGAAGGGTGAGAGAG--GAGGCTGCTGGGAACCAGAAGCTTGGCAGCCAGGAAGGCTGGGGAAGTTCAGTCTGACATTAGAGGATGGAGGCTGGAGACTCTGGGAGTCAGCTGTGCTGTTTGCTCTGAGCCCCAGGGTGCAGGGGAGGGTCCTTTACACC---------------AGGGAGCTTCAGGCCTCATAACTGTTTCTGGGCTCTGTACTCCCCTGATCCTCCATGAGAATTTTAAACAGT-GAGATAAGGGATCC-AGGGCCCCAGGAA--TCGGA----------------ATTACTTTTACCGAA
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2783330 540 -   3067355 CTTAGCACTACTTCTTGCTCTGGTCCTTGGAGCTGTT-TGTATAAGAAG---TTCTCAGGTATGGGAGGGACTAGAATGATGGCTTTGGCCCATCTCACGTCTAGGGATCCCACTGCCAGTGGGTGATTCGTCGAGTCA---CTTCCTGTTCCTGCTGGGGCTGGGGATGGTGAACCCAGTCAATCCACAAACCCTGAAAGGGAACCAGGCAGACAGGCA----------GAGGGCACTGCCT-GTTAAGTGGCCAATGGTCCCAAAACAGAAGTGGTGAAAGGTGAGAGAGAAAAGGCTGCTGGGAACCAGAAGCTTGGGAGCCAGGAAGGCTGAGAAAGTGCAGGCTGACAGTAGAGGCCGGAGGCTGGAGACCCTGGCAGTCAGCTGTGCTGTTCGCCCTGAGCCCCAGAGTACAAGGAGGGGTCCTTTCCACA---------------AGGGAGTTTCAGGTCTCATGACCATTTCTGGGCTCTATACTCCCCTGATCCTCCATGAGGATTGTAAACATC-AAGGTAAGGTATCC-AGGACCCCAGGAATGTCTGA----------------ATTACCTTTACCAAA
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364                52383 571 +    187130 CTTAGAGCTACTTCCTGCTCTGGTGCTTGGACCTGTGATGTGCAAGAAG---TTCTCAGGCATGGGGGGAACTGGGATGAAGGCCTCACCCCATCTCACGTGTAGGGAACTGACTGTTATTGGGGGACTGGCCGGGTCACTTCTTCCTGTTCCTGCTGGAGCTGGGGATGGTGAACCCAGTCAAGTC-CAAACCCTGGGAGGGAACCAGGCAGAC--------TGACAAGGAGGGCACTGCCT-GTCAAGTGGCCAATGGCCCT-GATTAGAAGAGGTGAATGGTGAGAGAG--GAGGCTGCTGGGAACCAGAAGCTCTGCAGTCAGG-AGGCTGAGAAAGTGCAGGCTGACAGTAGAGGCCGGAGGCTGGAGACCCTGGGAGTCAGCTGTGCTGTTTCCTCTGAGCTCCAGGGTGCAAGGGAGGGTCCTTTGTACCAGGGAGCTTCAGACAAGGGAGCTTCAGGCCTCATGACCATTTCTGGGTTCTGTACACCCCGTATCCTCCATGAGGATTCTAAACATC-AAGACAAGGTACCCAAGAGCCCCAGGAA--TCTGATTCTCACATCACTTGAATTACCTTTACCAAA
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         329774 571 -   1771730 CTTAGAGCTACTTCCTGCTGTGGTGCTTGGACCTGTGATGTGAAAGAAG---CTCTCAGGCATGGGAGGGACTAGAATGATGGCTTCGCCCCATCTCACGTGTAGGGATCCGACTGCTATTGAGGGATTGGCAGAGTCACTTCTCCTGGTTCCTGCTGGAGCTGGGGATGGTGAACCCAGTCAAGTCACAAACCCTGAGAGGGAACCAAGCAGAC--------TGACAAGGAGGGCACTGCCT-GTCAAGTGGCCAATGGCCCT-GATCAGAAGAGGTGAATGGTGAGAGAG--GAGGCTGCTGGGAACCAGAAGCTTGGCAGCCAGGAAGGCTGAGAAAGTGCAGGCTGACAGTAGAGGCCAGAGGCTGGAGACCCTGGG-GTCAGCTGTGCTGTTTCCTCTGAGCTCCAGGGTTCAGGGGAGAGCCCTTTACACCAGGGAGTTTCAGACAAGGGAGCTTCAGCCCTCATGACCATTTCTGGGTCCTGTACAACCTTTATCCTCCATAAGGATTCTAAACATC-TAGATAAGGTACCC-AGAGTCCCAGGAA--TCTGATTCTCCTATCACCTGAATTACCTTTACCAAA
i cebCap1.NW_016107755v1       N 0 C 0
s aotNan1.NW_018509740v1         409678 571 -    457564 CTTAGAGCTACTTCCTGCTCTGGTGCTTGGACCTGTGATGTGCAAGAAG---TTCTCAGGCGTGGGAAGGACTAGAATGATGGCTTCACCTCATCTCACGTGTAGGGATTCCACTGCTATTGGGGGATTGGCCGAGTCACTTCTCCTGGTTCCTGCTGGAGCTGGGGATGGTGAACCCAGTCAAGTCAAAAACCCTGAGAGGGAACCAAACAGAC--------TGACAAGGAGGGCACTGCCT-GTCAAGTGGCCAATGGCCCT-GATCAGAAGAGGTGAAGGGTGAGAGAG--GAGGCTGCTGGGAACCAGAAGCTTGGCAGCCAGG-AGGCTGAGAAAGTGCAGGCTGACACTAGAGGCCAGAGGCTGGAGACCCTGGGAGTCAGCTGTGCTGTTTCCTCTGAGCTCCAGGGTTCAGGGGAGGGCCCTTTACACCAGGGAGCTTCAGACAAGGGAGCTTCAGGCCTCATGACCATTTCTGGGTTCTGTACACCCCTTATCCTCCATGAGGATTCTAAACATC-TAGATAAGGTACCC-AGAGCCCCAGGAA--TCTGATTCTCATATCACCTGCATTACCTTTACCAAA
i aotNan1.NW_018509740v1       I 16316 C 0
s otoGar3.GL873550             16796392 498 -  18854210 CTGAGCGCTGCTCGCTGCTCTGCTCCTTGGGGCTGTGATGAGCCAGAAGACATCCTCAGGTGTGGAAGGGGCTGGAAATATGGCTTTGCTCCATCTGACCTTTAGGGATTCCGCTGCAGT---------------GTCACTTCTCTGTATTCTTAGTGGAGTTGAGGAT------------------------------AAAGAGACAGGCAGAC--------TGGCACAAAGTCCACTGCCTGGTCAAGTGGCCATTTGCCCTGGATCAGACGAGGTTAAGGG-AAGAGAG--GAGGCTGCTGGGAACCAG------------CAGGAAGGCCAAGAAAGTGCAGG-TGACCATAGAGGTCGGAGGCTGGAGACCCAGTGACTCAGCTCTGCTATTTCCCCTGAGCCCCAGGGTCCAGGGAAG-GTCCTCATCACC---------------AGGGAATTTTAGGTGTCGTGACCATCTCTGGACTCCATG-TGCCCTGATCTTCCATGAGGATTCTAAACAGTGGAGATTAGGTACCC-AGGGCACCCAGAA--CCTGAGTCTTATATTGG----ATTACCTTTATTAAA
i otoGar3.GL873550             C 0 I 152
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=2053037.000000
s hg38.chr6_GL000254v2_alt      1020934 494 +   4827813 GAGATCATCCTTCCATTTCATTTCT----TATAAGAT--ATGAAATATTAAATCAAAC--TAATACAGGATTAAT----GTGAAGCTAGCAGGTGTTTTGTGGATGGATTCCCCTGGCTGTTTATACTGGGGGAAGAAACAGGCCTGGCCCCATTCACAGATGAGAACAACAGGGTAGCCATACTCAGAGGACCTCAATACTGGGTGCTCCCAACCCTGCAGGAAAGACCCTCCCTGCAAACAGATGTACAGGAGGGTGACTGCAGGATCCCATGCTGTCTCTTTCTCCTCTCCTGAATCCTGGGTTTACCTTCCTAATTTCAGCTAAGTAGCTATATTAACCAGTTATTTAAGACTCAC-AGGGCCCCTCTCTACCATGGCACCTAACAGGGTCTTCTCTCCTCAAAAGAACTTCAGGAGGGGTCTACTCAATAAAAAGCAGCATGGAAGGGGCGGTAGGGGCAGCTCATCTCTAACTCCTGAAATAGACAGGATGGAGCCACCGT
s panTro5.chr6                 29983480 494 + 175400573 GAGATCATCCTTCCATTTCATTTCT----TATAAGAT--ATGAAATATTAAATCAAAC--TAATACAGGATTAAT----GTGAAGCTAGGAGGTGTTTTGTGGATGGATTCCCCTGGCTGTTTATACTGGGGGAAGAAACAGGCCTGGCCCCATTCACAGATGAGAACAACAGGGTAGCCATACTCAGAGGACCTCAATACTGGGTGCTCCCAACCCTGCAGGAAAGACCCTCCCTGCAAACAGATGTACAGGAGGGTGACTGCAGGATCCCATGCTGTCTCTTTCTCCTCCCCTGAATCCTGGGTTTACCTTCCTAATTTCAGCTAAGTAGCTATATTAACCAGTTATTTAAGACTCAC-AGGGCCCCTCTCTACCATGGCACCTAACAGGGTCTTCTCTCCTCAAAAGAACTTCAGGAGGGGTCTACTCAATAAAAAGCAGCATGGAAGGGGCGGTAGGGGCAGCTCATCTCTAACTCCTGAAATAGACAGGATGGAGCCACCGT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30217221 494 + 173848474 GAGATCATCCTTCCATTTCATTTCT----TATAAGAT--ATGAAATATTAAATCAAAC--TAATACAGGATTAAT----GTGAAGCTAGGAGGTGTTTTGTGGATGGATTCCCCTGGCTGTTTATACTGGGGGAAGAAACAGGCCTGGCCCCATTCACAGATGAGAACAACAGGGTAGCCATACTCAGAGGACCTCAATACTGGGTGCTCCCAACCCTGCAGGAAAGACCCTCCCTGCAAACAGATGTACAGGAGGGTGACTGCAGGATCCCATGCTGTCTCTTTCTCCTCCCCTGAATCCTGGGTTTACCTTCCTAATTTCAGCTAAGTAGCTATATTAACCAGTTATTTAAGACTCAC-AGGGCCCCTCTCTACCATGGCACCTAACAGGGTCTTCTCTCCTCAAAAGAACTTCAGGAGGGGTCTACTCAATAAAAAGCAGCATGGAAGGGGCGGTAGGGGCAGCTCATCTCTAACTCCTGAAATAGACAGGATGGAGCCACCGT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6018094 494 +   6154872 GAGATCATCCTTCCATTTCATTTCT----TATAAGAC--ATGAAATATTAAATCAAAC--TAATACAGGATTAAT----GTGAAGCTAGCAGGTGTTTTGTGGATGGATTCCCCTGGTTGTTTATACTGGGAGAAGAAACAGGCCTGGCCCCATTCACAGATGAGAACAACAGGGTAGCCATACTCAGAGGACCTCAATACTGGGTGCTCCCAACCCTGCAGGAAAGACCCTCCCTGCAAACAGATGTACAGGAGGGTGACTGCAGGATCCCATGCTGTCTCTTTCTCCTCTCCTGAATCCTGAGTTTACCTTCCTAATTTCAGCTAAGTAGCTATATTAACCAGTTATTTAAGACTCAC-AGGGCCTCTCTCTACCATGGCACCTAACAGGGTCTTCTCTCCTCAAAATAACTTCAGGAGGGGTCTACTCAATAAAAAGCAGCATGGAAGGGGCGGTAGGGGCAGCTCATCTCTAACTCCTGAAATAGACAGGATGGAGCCACCGT
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30219005 492 + 172585720 GAGATCATCCTTCCTTTTCATTTAT----TATAAGAT--ATGAAATATTAAATCAAAC--TGATACAGGATTAAT----GTGAAGCTAGCAGGTGTTTTGTCGATGGATTCCCCTGGTTGTTT-TATTGGAGGAAGAAATGGGTCTGGCCCCATTCACAGATAAGAACAGCAGGGTAGCCATACACAGAGGACCTCAATACTGGGTGCCC-CAACCCTGCAGGAAAGACCCTCCCTGCAAACAGATGTCCAGGAGGGTGACTGCAGGGTCCCATGCTGGCTCTTCCTCCTCTCCTGCATCCTGGGTTTACCTTCCTAATCTCAGCTAAGTAGCAATGTTAACCAGGTATCCAACGCCCTC-AGGACCCCTCTGTACCATGACACCTAACAGGGTCTTCTGTCCTCAAAAGAACTTCAGGAGGGGTCTATACTATAAAGAGCAGCATGGAAGGGGCAGCAGGAGCAGCCCATCTCTAACCCCTGGAATAGAGAGAATGGAGCCACAGT
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002711v1         692143 452 +    766320 GAGATCATCCTTCCATTTCATTTCT----TATAAGAT--ATGAAATATTAAATCAAAC--TAATACAGGATTAAT----GTGAAGCTAGCAGGTGTTTTGTCGATGGATTCCCCTGGTTGTTT-CGTTGGAGGAAGAAATGGGTCTGGCCCCATTCACATATAAGAACAGCAGGGTAGCCATACACATAGGACCTCAATACTGGGTGCCC-CAACCCTGCAGGAAAGACCCTCCCTGCAAACAGATGTCCAGGAGGGTGACTGCAGGGTCCCATGCTGGCTTTTCCTCTTCTCCTGCGT-TTGGGTTTACCTTCCTAATCTCAGCTAAGTAGCAATGTTAACCAGGTATTCAACGCCCTCAAGGCCCCCTCTGCACCATGACACCTAACAGGGTCTTCTGTCCTCAAAAGAACTTCAGGAGGGGTCTATACTATAAAAAGCAGCATGGAAGGGGCAGCAGGA----------------------------------------ACAGT
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29136399 491 -  71996105 GAGATCATCCTTCCATTTCATTTCT----TACAAGAT--ATGAAATATTAAATCAAAC--TAATACAGGATTAAT----GTGAAGCTAGCAGGCGTTTTGTCGATGGATTCCCCTGGTTGTTT-TATTGGAGGAAGAAATGGGTTCAGCCCCATTCACAGATAAGAACAGCAGGGTAGCCATACACAGAGGACCTCAATACTGGGTGCCC-CAACCCTGCAGGAAAGACCCTCCCTGCAAACAGATGTCCAGGAGGGTGACTGCAGGGTCCCATGCTGGCTCTTCCTCTTCTCCTGCAT-TTGGGTTTACCTTCCTAATCTCAGCTAAGTAGCAAGGTTAACCAGGTATTCAACGCCCTC-AGGGCCCCTCTGCACCATGACACCTAACAGGGTCTTCTGTCCTCAAAAGAACTTCAGGAGGGGTCTATACTATAAAAAGCAGCATGGAAGGGGCAGCAGGAGCAGCCCATCTCTAACCCCTGGAATAGAGAGAATGGAGCCACAGT
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2783870 496 -   3067355 GAGATCATCCTTCCATTTTGTTTATTTA-TATAAGAT--ATGAAATATTTAATCAAACAATAATACAGGATTAAT----TTGAAGGTACCAGGTGTTTTGTGGATAGATTCCGCCAGTTGTTTATATTGGAAGAAGAAACGGGTCTGGCCCCATTCACAGATGAGGACAGCAGGGTAACCATACTT--AGGACCTCGAAACTGGGTGCCCTCAACCCTGCAGGAGAAACCCTCCCTGCAAACAGATGTCCAGGAAGGTGACTGCATGGTCCCATGCTGTCTCTTTCTCATCTCCTGCATCCTGGATTTACCTTCCTAATCTCAGCTAAGTAACAATGTTAACCAGGTATTCAAGACCCTC-AGAGCCCCTCTCCACCATGGCACCTAACAGGGTCTTCTGTCCTCATAAGAACTTCAAGAGGTGTCTACTCTATAAAAACAAGCATGGAAGGGGCAACAGGAGCAGCTTATCCCTAA-CCCTGGAATAGAAAGGGTGGAGCCACAGT
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364                52954 489 +    187130 GGGATCATCCTTCCATTTGGTTCATTTC-TATAAGAT--ATGAAATATTAAATCAAACAGTAATACAAGATTAAT----GTGAGGGTACCAGATGTTACGTGGATAGATTCCCTTGGTTGTTTATATTGGAGGAAGACACAGGTCCAACCCTATTCACAGATGAGAATAGCAAGGTAACAGTACTC--AGGACCTTGACACTGAGCACCT-CAA-CCTGCAGGGAAGGCCCTCTCTATAAACAGATGTCCAGGAGGGTGACTGCATGGTGCCATGCTGTCTCTTCCTCCTCTCCTATGCCCTGGGTTTAACTTTTAAATCTCAGCTAATTAGCAATGTTAATCAGGTATTTAAGGTATTT-GGAACCCTTCTCTACCTTGGCACTTAACAGGATCTTCTGTCCT---AAGAA---CTGGAGGAGTCTACTCTATAAATTCCAGCACTGAAGGGGTGGCAGGGGCTGCTCATCTCTAGCCCCTGGAATAAAGAGGATGGGGCCACAGT
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         330345 491 -   1771730 GGGATCATCCTTTCATTTTGTTAATTTC-TATAAGAT--ATGAAATATTAAATCAAACAGTAATACAGGATTAAT----GTTAGGGTACCAGATGTTATGTGGATAGATTCCCCTGGTTTTTTATATTGGAGGAAGACACGGGACCAACCCTATTCACAGATGAGAATAGCAGGGTAGTGGTACTC--AGGACCTTGATGCTGGGCACCC-CAC-CCTGCAGGGAAGGCCCTCTCTATAAACAGATGTCCAGCAGGGTGACTGCATGATGCCATACTGTCTCTTCCTCCTCTCCTATGCCCTGGGTTTGACTTTTAAATTTCAGCTAATTAGCAATATTAACCAGGTATTTAAGATATTC-AAGGCCCTTCTCCACCTTGGCACCTAACAGGGTATTCTGT-CT---AAGAACTTCTGGAGGAGTCTACTCTATAAATTCCAGCACTGAAGGGGTGGCAGGGGCTACTTGACTCTAACCCCTGAAATAGAGAGAATGGGGCCACAGT
i cebCap1.NW_016107755v1       C 0 I 35
s aotNan1.NW_018509740v1         410249 491 -    457564 GGGATCATCCTTCCATTTGGTTCATTTC-TATAAGAT--ATGAAATATTAAATCCAACAGT-ATACAGGATTAAT----GTGAGGGTACCAGATGTTATGTGGATAGATTCCCCTGGTTGTTTATATTGGAGGAAGACACAGGACCAACCCTATTCACAGATGAGAATAGCAGGGTAGCGGTACTC--AGGACCTTGATACTGGGCACCT-CAA-CCTGCAGAGAAGGCTCTCTCTATAAACAGATGTCCAGGAGGGTGACTGCATGATGCCATACTGTCTCTTCCTCCTCTCCTATGCCCTGGGTTTGACTTTTAAATCTCAGCTAATTAGCAATGTTAACCAGGTATTTAAGATATTC-AGGGCCCTTCTCCACCTTGGCACCTAACAGGGTCTTCTGTCCT---AGGAACTTCTGGAGGAGTCTACTCTATAAATTCCAGCACTGAAGGGGTGGCAGGGGCTGCTTGTCTCTAACCCCAGAAATAGAGAGGATGGGGCCACAGT
i aotNan1.NW_018509740v1       C 0 C 0
s otoGar3.GL873550             16797042 463 -  18854210 GACATTATCCTTCCACTTTATTCATTTCTTGCAAGTCCAATTAAATATTAAATCGAACAATCAGACAGAATTAATTAACATGTAGGGACTAGGTG-TGTGTGGACTGATCCTCCCAGTTGTCTGTACTGGAGGAGGAAG-GGGCATAGTCTCGTTCACGGGTGAGAACAGCAAGGTGGCAACATTC--AGGACATTGTTCCTGGGTGTCCTAGACACTGAAGGG-AGACCCTTGCTGCAAACAGACATATAGGAGAGTGACCAGAAGGTCCCATACTGTCTCTTCCTTCTCTCCTGTGTCCTGGGCTTAACTCCCCAATCTCAACTGAGTAGC-ATACTGAGAAGGTATTCAAGACCCCT-GGGGCCCCTCTCCCACATGGCCCCTCACGTGGTCTTTTCTCCTCACTAGAACT-CAGGAAGGGTCTACTCTGTAAGTACCAGCATGGAAAGAGTGGCTGGGGAAGCCCAT------------------------------------
i otoGar3.GL873550             I 152 C 0
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=33358.000000
s hg38.chr6_GL000254v2_alt      1021428 10 +   4827813 CTCATTCCTC
s panTro5.chr6                 29983974 10 + 175400573 CTCATTCCTC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30217715 10 + 173848474 CTCATTCCTC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6018588 10 +   6154872 CTCATTCCTC
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30219497 10 + 172585720 CCTTTTCCTC
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002711v1         692595 10 +    766320 CCTGTTCCTC
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29136890 10 -  71996105 CCTGTTCCTC
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2784366 10 -   3067355 CCTGTGCCTC
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364                53443 10 +    187130 CCTGTGCCTC
i saiBol1.JH378364             C 0 C 0
s aotNan1.NW_018509740v1         410740 10 -    457564 TCTGTGCCTC
i aotNan1.NW_018509740v1       C 0 I 25
s otoGar3.GL873550             16797505 10 -  18854210 CCCGTGCCTC
i otoGar3.GL873550             C 0 C 0
e cebCap1.NW_016107755v1         330836 35 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=73650.000000
s hg38.chr6_GL000254v2_alt      1021438 25 +   4827813 ACTTATCCCATGGTCCTGCCTCAAA
s panTro5.chr6                 29983984 25 + 175400573 ACTTATCCCATGGTCCTGCCTCAAA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30217725 25 + 173848474 ACTTATCCCATGGTCCTGCCTCAAA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6018598 25 +   6154872 ACTTATCCCATGGTCCTGCCTCAAA
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30219507 25 + 172585720 GCCTATCCCATGGTCCTACCTCAAA
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002711v1         692605 25 +    766320 ACCTATCCCATGGTCCTACCTCAAA
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29136900 25 -  71996105 ACCTATCCCATGGTCCTACCTCAAA
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2784376 25 -   3067355 ACCCATCCCATGGTCCTGCGTTAAA
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364                53453 25 +    187130 TCCCATCTCACAGTCCTACCTTAAA
i saiBol1.JH378364             C 0 C 0
s otoGar3.GL873550             16797515 24 -  18854210 TCCTGTCT-GTGATCCTGCTCTTAA
i otoGar3.GL873550             C 0 C 0
e aotNan1.NW_018509740v1         410750 25 -    457564 I
e cebCap1.NW_016107755v1         330836 35 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=2030476.000000
s hg38.chr6_GL000254v2_alt      1021463 501 +   4827813 TACAGT---CTCCTGCAGG---------------CTCTG-CTGGGT-CTTTTTATTATCATTCTCCAGGTGGTGACCGGGTCCCTGATGCTGATGTGGTGCTCACAGCTTCCTGAAATATGACCCTTGGGGCCCAACACCAACAGGAGTTGAGGCCGGGGAGAAGCTTCAAGCTGTAGGGGATCTTTGGATTTGAAAGT-AGGGGTTGGTCACGGGCTGTCTGTAATGCTCAGGGTGTCAAGGCTGAGAGTGGCTGAGCTGAATCTGCTCATTAGCATGTTCTCCACTGTTTGAGAGCTGCCTTGTGCAGACCAGCAAGACACAGATTGTTCACAGCTCCCCTTGTCTCTTGGAAGACCCTGACTTCTCTTTCCCCAGCTGTGCAGCTGATGAG-----CTCTATCTCCTCCCAAGCATAGCAAG-GGGAGGATGGT--GG-GAGTGAGGCCCACTCCTCTGATG-CCCCAGAAC-----------------------------------CCCTTCCACGTAATCTCAATATCCAGGCCTGGTGTATC--TCCCTGGACCATCATTTCT
s panTro5.chr6                 29984009 504 + 175400573 TACAGTCTCCTCCTGCAGG---------------CTCTG-CTGGGT-CTTTTTATTATCATTCTCCAGGTGGTGACCGGGTCCCTGATGCTGATGTGGTGCTCACAGCTTCCTGAAATATGACCCTTGGGGCCCAACGCCAACAGGAGTTGAGGCCGGGGAGCAGCTTCAAGCCGTAGGGGATCTTTGGATTTGAAAGT-AGGGGTTGGTCATGGGCTGTCTGTAATGCTCAGTGTGTCAAGGCTGAGAGTGGCTGAGCTGAATCTGCTCATTAGCATGTTCTCCACTGTTTGAGAGCTGCCTTGTGCAGACCAGCAAGACACAGATTGTTCGCAGCTCCCCTTGTCTCTTGGAAGACCCTGACTTCTCTTTCCCCAGCTGTGCAGCTGATGAG-----CTCTATCTCCTCCCAAGCATAGCAAG-GGGAGGATGGT--GG-GAGTGAGGCCCACTCCTCTGATG-CCCCAGAAC-----------------------------------CCCTTCCACATAATCTCAATATCCAGGCCTGGTGTATC--TCCCTGGACCATCATTTCT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30217750 504 + 173848474 TACAGTCTCCTCCTGCAGG---------------CTCTG-CTGGGT-CTTTTTATTATCATTCTCCAGGTGGTGACCGGGTCCCTGATGCTGATGTGGTGCTCACAGCTTCCTGAAATATGACCCTTGGGGCCCAACACCAACAGGAGTTGAGGCCGGGGAGCAGCTTCAAGCCGTAGGGGATCTTTGGATTTGAAAGT-AGGGGTTGGTCACGGGCTGTCTGTAATGCTCAGTGTGTCAAGGCTGAGAGTGGCTGAGCTGAATCTGCTCATTAGCATGTTCTCCACTGTTTGAGAGCTGCCTTGTGCAGACCAGCAAGACACAGATTGTTCGCAGCTCCCCTTGTCTCTTGGAAGACCCTGACTTCTCTTTCCCCAGCTGTGCAGCTGATGAG-----CTCTATCTCCTCCCAAGCATAGCAAG-GGGAGGATGGT--GG-GAGTGAGGCCAACTCCTCTGATG-CCCCAGAAC-----------------------------------CCCTTCCACATAATCTCAATATCCAGGCCTGGTGTATC--TCCCTGGACCATCATTTCT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6018623 504 +   6154872 TACAGTCTCCTCCTGCAGG---------------CTCTG-CTGGGT-CTTTTTATTATCATTCTCCAGGTGGTGACCGGGTCCCTGATGCTGATGTGGTGCTCACAGCTTCCTGAAATATGACCCTTGGGGCCCAACGCCAACAGGAGTTGAGGCCGGGGAGCAGCTTCAAGCCGTAGGGGATCTTTGGATTTGAAAGT-AGGGGTTGGTCACGGGCTGTCTGTAATGCTCAGTGTGTCAAGGCTGAGAGTGGCTGAGCTGAATCTGCTCATTAGCATGTTCTCCACTGTTTGAGAGCTGCCTTGTGCAGACCAGCAAGACACAGATTGTTCGCAGCTCCCCTTGTCTCTTGGAAGACCCTGACTTCTCTTTCCCCAGCTGTGCAGCTGATGAG-----CTCTATCTCCTCCCAAGCATAGCAAG-GGGAGGATGGT--GG-GAGTGAGGCCCATTCCTCTGATG-CCCCAGAAC-----------------------------------CCCTTCCACATAATCTCAATATCCAGGCCTGGTGTATC--TCCCTGGACCATCATTTCT
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30219532 502 + 172585720 TACAGTCTCCTTCTGCAGG---------------CTCTG-CTGGGT-CTTTTTATTGTCATTCTCCAGGTGGTGACAGGATCCTGGACACTGATGTGGTGCTCACATCTTGCTGAAATATGATCCCTCGGACCTGATGCCAACAGGAGTTGAGGACGAGGAGCAGCTTTGGGCTATAGGGGATCTTTGGATTTGAAGGT-AGGGAATGGTGATGGGCTGCCC-TAGTGCTCAGGGTGTCAAGGCTGAGAGTGGCTGAGCTGAATCTGGTCATTAACATGTTCTCCACAG-TTGAAAGCCGCCTTGTACAGACCAGCAAGAAACAGATTGTTCTCAGTTCCCTGTGTCTCTGTGTACACCCTGCCTTCTCTTCCCCGAGCTGCGCAGCTGATGAG-----CTCTGTCTCCTCCCAAGCATAGCACA-GGGAGGATGGC--GG-GAGTAAGGCCCGTGCCCCTGATG-CCTCAGAAC-----------------------------------CCCTTCCACATAATCCCAATATCCAGGCCTGGGATCTC--TCCCAGGACCATCATTTCC
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002711v1         692630 503 +    766320 TACAGTCTCCTTCTGCAGG---------------CTCTG-CTGGGT-CTTTTTATTGTCATTCTTGAGGTGGTGACAGGATCCTGGACACTGATGTGGTTCTCACATCTTGCTGAAATATGATCTCTCAGACCTGATGCCAACAGCAGTTGAGGGCAGGGAGCAGCTTTGGGCTATAGGGGATCTTTGGATTTGAAGGT-AGGGAATGGTGATGGGCTGCCC-TAGTGCTCAGGGTGTCAAGGCTGAGAGTGGCTGAGCTGAATCTGGTCATTAACATGTTCTCCACAGTTTGAGAGCTGCCTTGTACAGACCAGCAAGAAACAGATTGTTCTCAGTTCCCTTTGTCTCTGTGTACACCCTGACTTCTCTTCCCCTAGCTGCACAGCTGATGAG-----CTCTGTCTCCTCCCAAGCATAGCACA-GGGAGGATGGC--TG-GAGTAAGGCCTGTTCCCCTGATG-CCTCAGAAC-----------------------------------CCCTTCCACATAATTCCAATATCCAGGCCTGGGATCTC--TCCCAGGACCATCATTTCT
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29136925 503 -  71996105 TACAGTCTCCTTCTGCAGG---------------CTCTG-TTGGGT-CTTTTTATTGTCATTCTCGAGGTGGTGACAGGATCCTGGACACTGATGTGGTGCTCACATCTTGCTGAAATATGATCCCTCAGACCGGATGCCAACAGCAGTTGAGGGCGGGGAGCAGCTCTGGGCTATAGGGGATCTTTGGATTTGAAGGT-AGGGAATGGTGATGGGCTGCCC-TAGTGCTCAGGGTGTCAAGGCTGAGAGTGGCTGAGCTGAATCTGGTCATTAACATGTTCTCCACAGTTTGAAAGCTGCCTTGTACAGACCAGCAAGAAACAGATTGTTCTCAGTTCCCTGTGTCTCTGTGTACACCCTGACTTCTCTTCCCCTAGCTGCACAGCTGATGAG-----CTCTGTCTCCTCCCAAGCATAGCACA-GGGAGGATGGC--TG-GAGTAAGGCCTGTTCCCCTGATG-CCTCAGAAC-----------------------------------CCCTTCCACATAATTCCAATATCTAGACCTGGGATCTC--TCCCAGGACCATCATTTCT
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2784401 502 -   3067355 TACAGTCTCCTCCTGCAGG---------------CTCTG-CTGGGT-CTCTTTATTGTTATTCTCCAGGTGGTAACAGGGTCGCTGATACTGATGTGGTGCTCACAGTTTCCTGAAATATGATCCTTGGGGCCCAATGCCCACAGGAGTTGAGAGCGGGGAGCAGCTTTGGGGTGTAGGGGATCTTTGGATTTGAAGGT-AGGGGATGGTGATGGGCTTCCC-TAATGCTCAGGGTGTCAAGGCTGAGAGTGGCTGAGCTGAA-CTGCTCATTACCATGTTCTCCACAGTTTGAGAGCTGCCTTGTGTAGACCAGCAAGACACAGAATATTCTCAGCTCCCCTTGTCTTTTGGAAGACCCTGACTTCTCTTTCCTCGGCTGTGCAGCTGATGAG-----CTCTGTCTCCTCCCAAGCATAGCACG-AGGAGGATGGC--AG-GAGTGAGGCCCATTCCCCTTATTCCCCCAGAAC-----------------------------------TCCTTCCACATAATCCCAATATCCAGGCCCAGGGCCTC--TCCCA-GACCATCAtttct
i colAng1.NW_012115566v1       C 0 I 322
s saiBol1.JH378364                53478 439 +    187130 --TAGTCTCTTCCTGGAAGTAAATAAAGACCCAACTCTG-CTGGGTCCTCTTTATTGTCATTCTCCAGGTGGCTACAGGGTCCTAGAAGCTG----------GACAGCTTCCTGAAATCTGATATCTGGGGCCTGATGCCAACAGGAGTTGAGGAAGTGGAG-------------------------------------------------------------------TTGAGGTGTTGAGGCTGAGAGTGGCTGAGCTAAATCTGGTCATTACCGTGTTCTCCACAGTTTGAAAGCTGCCTTGTGCAGACCAGCAAG--ACAGATTATTCTCAGCTCCC-TTGTCTGTCTGTGGACCCTTACTTCTTT-CCCCCAGCTGCTCAGCTGATGAG-----CTCTGTCTCCTTCCAAGCATAGCACA-GGGAGGATGGG--G--GAGAGGGGCCAATTACACAGATG-CTCAAGAAC-----------------------------------CCCTTCCACATAATCCCAATATCCAGGCCTGGGGTCCCCTTCCCTGGATCAACCCTCCT
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         330871 533 -   1771730 TACAGTTTCCACCTGCAGG---------------CTCTG-CTTGGTCCTCTTTGTTGTCATTCTCCAGGTGGTGACAGGGTCAGGGAAGCTG------TGCTTACAGCTTCCTGAAATATGATTCCTGAGGCCTGATGCCAACAGGAGTTGAGGAAGTGGAGCAGCTTTAGGCTGT-GGGGATCTCTGCATTTGAAGGT-AGGTGATGGTGATGGGCTGCCCATAATGCTCAGGGTGTCAAGGCTGAGAGTGGCTGAGCTGAATCTAGTCATTACCATGTTCTCCACAGTTTGAGAGCTGCCTTGTGCAGACCAGCAAGACACAGATTGTTCCCAGCTCCC-TTGTCTGTCTGTGGACCCTTACTTCTTT--CCCCAGCTGCTCAGCTGATGAG-----CTCTGTCTCCTTCCAAGCATATTATA-GGGAGGATGGG--GGAGAGAGGAGCCAATTCCACAGATG-CCCAAGAACCCCTTCCACATAATCCCAATATCCTTCCACATAATCCCTTCCACATAATCCCAATATCCAGGCCTGGGGTCCCCTTACCTAGGTCAACCCTCCT
i cebCap1.NW_016107755v1       I 35 C 0
s aotNan1.NW_018509740v1         410775 503 -    457564 TACAGTTTCCACCTGCAGG---------------CTCTG-CTGGGTCCTCTTTGTTGTCATTCTCCAGGTGGTGACAGGGTCAGGGAAGCTA------TGCTCACAGCTTCCTGAAATATGATCCCTGGGGCCTGATGCCAACAGGAGTTGAGGAAGTGGAGCAGCTTTGGGCTGTGGGGGAACTTTGGATTTGAAGGT-AGGGGATGGCGATGGGCTGCCCATAATGCTCAGGGTGTCGAGGCTGAGAGTGGCTGAGCTGAATCTGGTCATTACCGTGTTCTCCACAGTTTGAGGGCTGACTTGTGCAGACCAGCAAGACACAGATTGTTCTCACCTCCC-TTGTCTCTCTGTGGACCCTTACTTCTTTTCCCCTAACTGCTCAGCTGATGAA-----CTCTGTTTCCTTCCAAACTTATTATA-GGGAGGATGGGTTGGGGAGAGGAGCCAATTACACAGATG-CCCAATAAC-----------------------------------CCCTTTCACATAATCCCAGTATCCAGGCCTGGGGTCCCCTTCCTTAGATCAACCCTCCT
i aotNan1.NW_018509740v1       I 25 C 0
s otoGar3.GL873550             16797539 493 -  18854210 TACCGTCTCCTCCTGGGGG---------------CTTTGCCTGGGC-CTCTTTACTGTGATTCTCCAGG-AGTGACAGGGTCCCTGAGACTGATGCGCTGCTCACATCT---TAAAATATGATGC-TGGGGCCTGATGCCAGCAAGGGGGAGGCAATAGGAGGCAGCTTGTGGTGCAGTGGCCTTTGAGATTTGGGGGTGGGGGGATGGGAATGGGCTGTCTATGATGCTCAAGGTACCAAGACAGACAGTGGCTGGGCTGAATCTGGTCATTGTCATTTTCTCCACAGCTTGAGAGCTGCC-TGTGTGGACCAGTGAGACAGTAATTGTTCTC--------TCGTCT----GTGTCGCCTGACTTCTTTCCCCACAGCTGCTCAGCTGGTGAGTCTGTCTCTTTCTCTTTCC-TGCAGAATGTGTGGGAGGGTGTG--GG-GAGAGGGGTGCACTCCA-GGATC-CCCCAGAAC-----------------------------------CTCCTCCA-ATATACCCAACATCCAGGCTGCAGGTGCCCTTCCCTGGGTCAACCTGCCT
i otoGar3.GL873550             C 0 C 0
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=328063.000000
s hg38.chr6_GL000254v2_alt      1021964 82 +   4827813 TTTCTGGGAATGAAAGGGTTACAATATCTCCCTCCTAGATTTCCCTTGTCACTCACTCACCCTGAATAGACTTCTTACTCTA
s panTro5.chr6                 29984513 82 + 175400573 TTTCTGGGAATGAAAGGGTTACAATATCTCCCTCCTAGATTTCCCTTGTCACTCACTCACCCTGAATAGACTTCTTACTCTA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30218254 82 + 173848474 TTTCTGGGAATGAAAGGGTTACAATATCTCCCTCCTAGATTTCCCTTGTCACTCACTCACCCTGAATAGACTTCTTACTCTA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6019127 82 +   6154872 TTTCTGGGAATGAAAGGGTTACAATATCTCCCTCCTAGATTTCCCTTGTCACTCACTCACCCTGAATAGACTTCTTACTCTA
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30220034 82 + 172585720 TTTCTTGGAATGAAAGGGTTACAGGGTCTCCCTCCCAGATATCCACTGTGACTCACTCACCCTAAATAGATGTGTTGTTCTA
i rheMac8.chr4                 C 0 I 24
s cerAty1.NW_012002711v1         693133 82 +    766320 TTTCTTGGAATGAAAGGGTTACAGGGTCTCCCTCCCAGATTTCCACTGTGACTCACTCACCCTAAATAGATGTGTTGTTCTA
i cerAty1.NW_012002711v1       C 0 I 24
s chlSab2.chr17                29137428 81 -  71996105 TTTCTTGGAATGAAAGGGTTACAGGGTCTCCCTCCCAGATTTCCACTGTG-CTCACTCACCCTAAATAGATGTGTTGTTCTA
i chlSab2.chr17                C 0 I 24
s colAng1.NW_012115566v1        2785225 82 -   3067355 TTTCTGGGGATGAAAGGGTTACAATGTCTCCCTCCCAGATTTCCCTTGTCACTCACTCACCCCGAATAGACTTCTTACTCTA
i colAng1.NW_012115566v1       I 322 C 0
s saiBol1.JH378364                53917 82 +    187130 TTTCTAGGATTGATAGGGTTACACTCTCTCCTTCCCACATGGACCCTGTCACTCACGTACACTAAATAGATGTCTTGTTCTG
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         331404 82 -   1771730 TTTCTGGGAATGAAAGAGTGTCAGTGTCTCCCTCCCACATCTCCCCTGTCACTCACTTACGCTAAATAGATGTCTTGCTCTG
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         411278 82 -    457564 TTTCTGGGAATGAAAGCTTAACAGTGTCTCCTTCCCACATGTCCCCTGTGATTCACTTACACTAAATAGATGTCTTGTTCTG
i aotNan1.NW_018509740v1       C 0 C 0
s otoGar3.GL873550             16798032 67 -  18854210 TTTCTCAGCATGAAAATGTTACAGTGTTTCCCT-------------TGTTCCTTACTCACCCTG--TAGCCATCCTGCTCCA
i otoGar3.GL873550             C 0 C 0
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=69817.000000
s hg38.chr6_GL000254v2_alt      1022046 26 +   4827813 TTAGTTATTGTTCTCATATCATTTCT
s panTro5.chr6                 29984595 26 + 175400573 TTAGTTATTATTCTCATATCATTTCT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30218336 26 + 173848474 TTAGTTATTATTCTCATATCATTTCT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6019209 26 +   6154872 TTAGTTATTGTTCTCATATCATATCT
i gorGor5.CYUI01015250v1       C 0 C 0
s colAng1.NW_012115566v1        2785307 26 -   3067355 TTAGTTATTGTTCTCATATCCTTTCT
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364                53999 26 +    187130 TTAGTTCCTGTTCTCATATCCTTTCG
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         331486 26 -   1771730 TTAGTTACTGTTCTCATATCCTTTCT
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         411360 26 -    457564 TTAGTTACTGTTCTCATAACCTTTCT
i aotNan1.NW_018509740v1       C 0 C 0
s otoGar3.GL873550             16798099 26 -  18854210 TTAGTTATTGTTCTCATTTCCTTTCC
i otoGar3.GL873550             C 0 C 0
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e chlSab2.chr17                29137509 24 -  71996105 I
e cerAty1.NW_012002711v1         693215 24 +    766320 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e rheMac8.chr4                 30220116 24 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=1338178.000000
s hg38.chr6_GL000254v2_alt      1022072 290 +   4827813 TTGAAGCTGTGGTAAAATATTATCAGCCATTAATAAAACATGGAGGTTAGGTTCTCTTTTTGGATTCTGAGGATCTGCTGTgctggggcaggggcaggtggggagagaagggcgggtggagg-gccaggtgcTGAGTGGTGTGTGGCCTCGCTCTGTGCTCAACAAAGCTCCTGCTGTGGTCATTTCCTGTTTATTTGTCTGGATCTCTCCTTGCATTGTGATTGGTGCCTGGTCTTTAGG-GGTGGGTGCTGCTCCAGGTCGGAGGCCTCACACAACTCCAGGCTGAGCCT
s panTro5.chr6                 29984621 290 + 175400573 TTGAAGCTGTGGTAAAATATTATCAGCCATTAATAAAACATGGAGGTTAGGTTCTCTTTTTGGATTCTGAGGATCTGCTGTGCTGGGGCAGGGGCAGGTGGGGAGAGAAGGGCGGGTGGGGG-GCCAGGTGCTGAGTGGTGTGTGGCCTCGCTCTGTGTTCAACAAAGCTCCTGCTGTGGTCATTTTCTGTTTATTTGTCTGGATCTCTCCTTGCATTGTGATTGGTGCCTGGTCTTTAGG-GGTGGGTGCTGCTCCAGGTCGGAGGCCTCACACAACTCCAGGCTGAGCCT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30218362 290 + 173848474 TTGAAGCTGTGGTAAAATATTATCAGCCATTAATAAAACATGGAGGTTAGGTTCTCTGTTTGGATTCTGAGGATCTGCTGTGCTGGGGCAGGGGCAGGTGGGGAGAGAAAGGCGGGTGGAGG-GCCAGGTGCTGAGTGGTGTGTGGCCTCGCTCTGTGTTCAACAAAGCTCCTGCTGTGGTCATTTCCTGTTTATTTGTCTGGATCTCTCCTTGCATTGTGATTGGTGCCTGGTCTTTAGG-GGTGGGTGCTGCTCCAGGTCGGAGGCCTCATACAACTCCAGGCTGAGCCT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6019235 289 +   6154872 TTGAAGCTGTGGTAAAATATTATCAGCCATTAATAAAACATGGAGGTTAGGTTCTCT-TTTGGATTCTGAGGATCTGCTGTgctggggcaggggcaggtggggagagaagggcgggtggagg-gccaggtgcTGAGTGGTGTGTGGCCTCACTCTGCGCTCAACAAAGCTCCTGCTGTGGTCATTCCCTGTTTATTTGTCTGGATCTCTCCTTGCATTGTGATTGGTGCCTGGTCTTCAGG-GGTGGGTGCTGCTCCAGGTCGGAGGCCTCACACAACTCCAGGCTGAGCCT
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30220140 274 + 172585720 TGGAAGATGTGATAAAACATTATAAGCCATTAATAAAACATGGAGGTTAGGATCTCTTTTTGGATTCTGAGGATCTGCTGTGC---------------TGGGGAGAGAAGGGCAGGTGGAGG--GCAGGTGCTGAGTGGTGTGCAGCCTTGCTCTGTGCTCAGTAAAGCTCCCGCTGTGGTCATTTCTTGTGTATTTGTCTGGATCCCTCCATGTGCTGGGATTTGTGCCTGGTCTTTAGG-GGCGGGTGCTGCTCCAGGTCGGAGGCCTCACACATCTCCAGGCTGAGCCT
i rheMac8.chr4                 I 24 C 0
s cerAty1.NW_012002711v1         693239 274 +    766320 TGGAAGATGCGATAAAACATTATAAGCCATTAATAAAACATGGAGGTTAGGATCTCTTTTTGGATTCTGAGGATCTGCTGTGC---------------TGGGGAGAGAAGGGCAGGTGGAGG--GCAGATGCTGAGTGGTGTGCAGCCTTGCTCTGTGCTCAGTAAAGCTCCTACTGTGGTCATTTCTTGTGTATTTGTCTGGATCCCTCCATGTGCTGGGATTTGTGCCTGGTCTTTAGG-GGCGGGTGCTGCTCCAGGTCGGAGGCCTCACGCGTCTCCAGGCTGAGCCT
i cerAty1.NW_012002711v1       I 24 C 0
s chlSab2.chr17                29137533 275 -  71996105 TGGAAGATGCCATAAAACATTATAAGCCATTAATAAAACATGGAGGTTAGGATCTCTTTTTGGATTCTGAGGATCTGCTGTGC---------------TGGGGAGAGAAGGGCAGGTGGAGG-AGCAGGTGCTGAGTGGTGTGCAGCCTCGCTCTGTGCTCAGTAAAGCTCCTACTGTGATCATTTCTTGTGTATTTGTCTGGATCCCTCCATGTGCTGGGATTTGTGCCTGGTCTTTAGG-GGCGGGTGCTGCTCCAGGTTGGAGGCCTCACACATCTCCAGGCTGAGCCT
i chlSab2.chr17                I 24 C 0
s colAng1.NW_012115566v1        2785333 290 -   3067355 TTGAAGCTGTGATAAAATATTATAAGCTATTCAGGAAACACAGAGGTTAGGTTCTCTTTTTGAATTCTGAGGATCTGCTGTgctggggcaggggcaggtggggagagaaggacgggtggagg-ggcaggtgcTGAGTGGTGTGTGGCCTCGCTCTGTGCTCAGTAAGGCTCCTGCTGTGGTCATTTCCTACCCATTTGTCTGGATCCCTCCTTGTGCTGTGATTTGTGTCCGGTCTTTATT-GGCGGATGCTGCTCCAGGTTGGAGACCTCACACATCTCCAAGTTGAGCCT
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364                54025 290 +    187130 ATGAAGATGTGGTGAAATATTACCATCTATTAATAAAATATGGAAGTCATGTTCTCTTTTTGGATTCTGAGGATCTGCCGTGCTGAGGTAGAGGCAGGTGGGGAGAGAAGGGCGGGTGGAGG-GGCAGGTGCTGAGTGGTGAACAGCCTCACTGTGTGCTCTGCAAAGTTCCTGCTGTGGTTATTTCTTGTCTATTTGTCTGGATCCCTCCTTGTGCTGTGATTTGTGCCTGGTCTTTAGG-GGCAGGTGCTGCTCCAGGTCAGAGGCCTTGCACGTCTCCAGGCTGAGCCT
i saiBol1.JH378364             C 0 I 2911
s cebCap1.NW_016107755v1         331512 290 -   1771730 ATAAAGATGTGGTGAAATATTACCAACTACTAATAAAACATGGAAATCGGGTTCTCTTTTTAGAGTCTGAGGATCTGCGGTGGTGAGGCAGGGGCAGATGGGGAGAGAAGGGCGGGTGGAGG-GGCAGGTGCTGAGTGGTGTGCAGCCTTGCTCTGCACTCAGTAAAGTTCCTGCTATGATCATTCCTTGTCTATTTGTCTGGATTACTCCCTGTGCTGTGATTTGTGCCTGGTCTTTAGG-GGCAGGTGCTGCTCCGGGTCAGAGGCCTCACACATCTCCAGGCTGAGCCT
i cebCap1.NW_016107755v1       C 0 I 4910
s aotNan1.NW_018509740v1         411386 290 -    457564 ATGAAGATGTGGTGAAATATTACCAACTATTAATAAAACATGGAAGTAAGGTTCTCTTTTTAGATTCTGAGGATCTGCTGTGCTGAGGCAGGGGCAGGTGGGGAGAGAAGGGCAGGTGGAGG-GGCAGGTGCTGAGTGGTTTGCAGCCTCTCTTTGCACTCAGGAAAGTTCCTGCTGTGGTCATTCCTTGTCTATTTGTCTGGATCCCTCCTTGTGCTGTGATTTGTGCCTGGTCTTTAGG-GGCAGGTGCTGCTCCAGGTCAGAGGCCTCGCACATCTCCAGGCTGAGCCT
i aotNan1.NW_018509740v1       C 0 I 5568
s otoGar3.GL873550             16798125 273 -  18854210 TTGAACAAGCGGTAAAATACTATCAAGTATTCAGAAAAGATGGAGGTTAGAGTCTCTCCTTGGAGTCTGAGTATGTGCTGGGCAGACGGTGGAAGGGCGGAGGGGGGAAGGGCAGGGGGAGGAGGCAGGTGCTGAGTGGGGAGCAGCCTCAC--TGTGCTCAGTAAAGTTCCTGC----------------CTATTTGTCTGGGTCCCTCCTGGTGCTGGGACTTGTCCCTGTTCTTTAGGTGGCAGGTGCTGCTCCAGGTCAGAG-CCTCACACACCTCCAGGCTGAGCCA
i otoGar3.GL873550             C 0 C 0
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=352447.000000
s hg38.chr6_GL000254v2_alt      1022362 145 +   4827813 TTCTTCAAGTCCATGGAGGTCAAGGGCAGATACT----------------------GGCAGCTCTCCATCCTGCCCTCGCCTCCACTTTATCTGGCATATTTTTATATGTTGATCTGATCCTCCTCATAAGGGATGTATATGAGCATTATTTTGTAGGAGAGCCGCT
s panTro5.chr6                 29984911 145 + 175400573 TTCTTCAAGTCCATGGAGGTCAAGGGCAGATACT----------------------GGCAGCTCTCCATCCTGCCCTCGCCTCCACTTTATCTGGCATATTTTTATATGTTGATCTGATCCTCCTCATAAGGGATGTATATAAGCATTATTTTGTAGGAGAGCCGCT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30218652 145 + 173848474 TTCTTCAAGTCCATGGAGGTCAAGGGCAGATACT----------------------GGCAGCTCTCCATCCTGCCCTCGCCTCCACTTTATCTGGCATATTTTTATATGTTGATCTGATCCTCCTCATAAGGGATGTATATGAGCATTATTTTGTAGGAGAGCCGCT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6019524 166 +   6154872 TTCTTCAAGTCCATGGAGGTCAAGGGCAGATACTGGCAGCTCTCCATCCTGCCCTCGGCAGCTCTCCATCCTGCCCTCGCCTCCACTTTATCTGACATA-TTTTATATGTTGATCTGATCCTCCTCATAAGGGATGTATATGAGCATTATTTTGTAGGAGAGCCACT
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30220414 145 + 172585720 TTCTCCAAGTCCATGGAGGTCAAGGGCTGAGAAT----------------------GGCTAGTCCCACTCCTGCCTTGAGTTTCACTTTATTTGGCATATTTTTATATGTTGATCTGATCCTTCTCATAAGGGATGTATATGAGCATTATTTCATAGGAGAGCCGCT
i rheMac8.chr4                 C 0 I 1
s cerAty1.NW_012002711v1         693513 145 +    766320 TTCTCCAAGTCCATGGAGGTCAAGGGCTGAGAAT----------------------GGCTAGTCCCACTCCTGCCTTGAGTTTCACTTTATTTGGCATGTTTTTATATGTTGATCTGATCCTTCTCATAAGGGATGTATATGAGCATTATTTCGTAAGAGAGCCACT
i cerAty1.NW_012002711v1       C 0 I 1
s chlSab2.chr17                29137808 145 -  71996105 TTCTCCAAGTCCATGGAGGTCAAGGGCTGAGAAT----------------------GGCTAGTCCCACTTCTGCCTTGAGTTTCACTTTATTTGGCATATTTTTATATGTTGATCTGATCCTTCTCATAAGGGATGTATATGAGCATTATTTCGTAAGAGAGCCACT
i chlSab2.chr17                C 0 I 1
s colAng1.NW_012115566v1        2785623 144 -   3067355 TTCTCCAAGTCTATGGAGGTGAAGGGCAGATACT----------------------GGCAACTTTCCATCCTGCCCTCACCTCCACTTTATTAGGCATATTTTAATATGTTGATCTGATCCTTCTTATAAGGGATG-ATATGAGCATTGTTTCGTAGGAGAGCTGCT
i colAng1.NW_012115566v1       C 0 I 9
s otoGar3.GL873550             16798398 141 -  18854210 TTCTCCAAACCCATGGAGGTCAAGGGCTGAGCAT----------------------GGCAGGT--CAATCCTGGCCTCAGTTCCTCTCCTTTGTGTGTATTTTTATATTTAGATTCGATCCCTCTCATCAGGGCTTTCCATGAGTACTACTTTGTAGGAGGGCTG--
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                54315 2911 +    187130 I
e aotNan1.NW_018509740v1         411676 5568 -    457564 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=31668.000000
s hg38.chr6_GL000254v2_alt      1022507 21 +   4827813 ATGTCCCACAG---TGGCCATGCT
s panTro5.chr6                 29985056 21 + 175400573 ATGTCCCACAG---TGGCCATGCT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30218797 21 + 173848474 ATGTCCCACAG---TGGCCATGCT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6019690 21 +   6154872 ATGTCCCACAG---TGGCCATGCT
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30220560 21 + 172585720 TCATCCCGCCG---TGGCCACACT
i rheMac8.chr4                 I 1 C 0
s cerAty1.NW_012002711v1         693659 21 +    766320 TCATCCCGCCG---TGGCCATGCT
i cerAty1.NW_012002711v1       I 1 C 0
s chlSab2.chr17                29137954 21 -  71996105 TCATCCCGCCG---TGGCCATGCT
i chlSab2.chr17                I 1 C 0
s otoGar3.GL873550             16798539 24 -  18854210 AGATCCTTGGGGTCTGGCGGTGCT
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                54315 2911 +    187130 I
e aotNan1.NW_018509740v1         411676 5568 -    457564 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2785767  9 -   3067355 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=208823.000000
s hg38.chr6_GL000254v2_alt      1022528 86 +   4827813 CTGTCCCTGACACCAGGATCCTGTGTGCTTTGTTGTTGTCGTCCCCTAAAGACCCAGGACAGCCTCTGCACATGG-GGCTTCTCAGA
s panTro5.chr6                 29985077 86 + 175400573 CTGTCCCTGACACCAGGATCCTGTGTGCTTTGTTGTTGTCGTCCCCTAAAGACCCAGGACAGCCTCTGCACATGG-GGCTTCTCAGA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30218818 86 + 173848474 CTGTCCCTGACACCAGCATCCTGTGTGCTTTGTTGTTGTCGTCCCCTAAAGACCCAGGACAGCCTCTGCACATGG-GGCTTCTCAGA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6019711 86 +   6154872 CTGTCCCTGACACCAGGATCCTGTGTGCTTTGTTGTTGTTGTCCCCTAAAGACCCAGGACAGCCTCTGCACATGG-GGCTTCTCAGA
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30220581 86 + 172585720 CTGTCCCTGACACTAGCATCCTGTGTGCTTTGTTGTTGCTGTCCCCTAAAGACTCGGGACAGCCTCTGCACGTGG-GGCTTTTCAGA
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002711v1         693680 86 +    766320 CTGTCCCTGACACTAGCATCCTGTGTGCTTTGTTGTTGCTGTCCCCTAAAGACCCGGGACAGCCTCTGCACGTGG-GGCTTCTCAGA
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29137975 86 -  71996105 CTGTCCCTGACACTAGCATCCTGTGTACTTTGTTGTTGCTGTCCCCTAAAGACCCGGGACAGCCTCTGCACGTGG-GGCTTCTCAGA
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2785776 84 -   3067355 CTGTCTCTGACATGAAGATCCTGTGTTCTTTTTTGTTGTTGTCCCCTAAAGA--CAGAAGAGCCTCTGCACGTGG-GGTTTCTCAGA
i colAng1.NW_012115566v1       I 9 I 335
s otoGar3.GL873550             16798563 50 -  18854210 GTGTCTCTG-------------------------------------TAAAGGCCCAGGGCAGCCTCTCCACATGGCAGAGCCTCAGA
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                54315 2911 +    187130 I
e aotNan1.NW_018509740v1         411676 5568 -    457564 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=37062.000000
s hg38.chr6_GL000254v2_alt      1022614 18 +   4827813 TGACACAGATTGATCGTT
s panTro5.chr6                 29985163 18 + 175400573 TGACACAGATTGATCGTT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30218904 18 + 173848474 TGACACAGATTGATCGTT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6019797 18 +   6154872 TGACACAGATTGATCGTT
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30220667 18 + 172585720 TGACACAGATTGATCTTT
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002711v1         693766 18 +    766320 TGACACAGATTGATCTTT
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29138061 18 -  71996105 TGACACAGATTGATCTTT
i chlSab2.chr17                C 0 C 0
s otoGar3.GL873550             16798613 18 -  18854210 TGTCCCAAGTTGGCTGTT
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                54315 2911 +    187130 I
e aotNan1.NW_018509740v1         411676 5568 -    457564 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2785860 335 -   3067355 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=224992.000000
s hg38.chr6_GL000254v2_alt      1022632 84 +   4827813 CCCACCTCTGCCTTCTTTCCTGTTCCATTTCCAGAATGCTTCTA-TTGTTTCC-CTTTTATTGTAGTAAGTCAAATTTTTGAATTA
s panTro5.chr6                 29985181 84 + 175400573 CCCACCTCTGCCTTCTTTCCTGTTCCATTTCCAGAATGCTTCTA-TTGTTTCC-CTTTTATTGTAGTAAGTCAAATTTTTGAATTA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30218922 84 + 173848474 CCCACCTCTGCCTTCTTTCCTGTTCCATTTCCAGAATGCTTCTA-TTGTTTCC-CTTTTATTGTAGTAAGTCAAATTTTTGAATTA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6019815 84 +   6154872 CCCACCTCTGCCTTCTTTCCTGTTCCATTCCCAGAATGCTTCTA-TTGTTTCC-CTTTTATTGTAGTAAGTCAAATTTTTGAATTA
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30220685 84 + 172585720 CCCACCTTTGCCTTCTTTCCTGCTCCATTTCCAAAATGCTTCTA-TTGCTTCC-CTTTCATTGTAGTAAGTCAAATTTTTGAATTA
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002711v1         693784 84 +    766320 CCCACCTTTGCCTTCTTTCCTGCTCCATTTCCAAAATGCTTCTA-TTGCTTCC-CTTTCACTGTAGTAAGTCAAAATTTTGAATTA
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29138079 84 -  71996105 CCCACCTTTGCCTTCTTTCCTGCTCCATTTCCAAAATGCTTCTA-TTGCTTCC-CTTTCATTGTAGTAAGTCAAATTTTTGAATTA
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2786195 84 -   3067355 cCCACCTTTGCTTTCTTTCCTGATCCGTATCCAAAGTGCTTCTA-TCTTTTCC-CTTTTAATGTAGTAAGTCAAATTTTTGATTTG
i colAng1.NW_012115566v1       I 335 C 0
s otoGar3.GL873550             16798631 85 -  18854210 CCCCCCTTTGCCCTCTCTCCTGCTTTGTTT-TAGAATATTCCTCTTTGTTTCCACATTTTTTGTGGTAAGCCAAGTTTTGGAATTA
i otoGar3.GL873550             C 0 I 4104
e saiBol1.JH378364                54315 2911 +    187130 I
e aotNan1.NW_018509740v1         411676 5568 -    457564 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=1632332.000000
s hg38.chr6_GL000254v2_alt      1022716 781 +   4827813 Aggcctgggcacactcactcacgcctgtaatcttagcactttgggaaggctaaggcaaagggattgcttgaggccagtagttaaagaccaacctcggcaacataacaagacccagtctct---tccaaaaCAAACTGAATTCGCATTGTGAATAGATATGTTATTGCCATGTCATAAATAAATTCTTGTCCCTTTTTCTGTGGGAGCACCCTGTG----GTCTGGGTCCTGGCAGGAAAGATATGGCACAGaaggaagacacgttttaaagaggttctggcagggctaagaaagtcacaa----------ggggcactgaagctccctgggatgatctgtagcaggaaatggtttgcatttctgagcttgaaagagcaaggaagggagcagtttctagaactcaggcaaatctgtagctttcactaggggcagcccgccatgcctatggctgtagatagaggcctgaagtgattacagaatcacagagctgcccagagtaagtgagggaaatgaaaaccctgagttactcctcctcccacactcccatctcctgcaggtgcctgttatcatccacacccaagcacaagccagatggtgaaggagcacaggccatgtcgtctgtctgtcatagttgcctcccagtgtagggggcaggatggaagagagtggatgatggctctgtgaggagatggaaGCTGAGAATAATGCACTTGCTTACAGTGTTCACATTCTTCATGGAATTTACTTAAATACACTAGCATTTGCTCTAATCCAAAATTATACCTTTAAAAAGCAAC
s panTro5.chr6                 29985265 781 + 175400573 Aggcctgggcacactcactcacgcctgtaatcttagcactttgggaaggctaaggcaaagggattgcttgaggccagtagttaaagaccaacctcggcaacataacaagacccagtctct---tccaaaaCAAATTGAATTAGCATTATGAATAGATATGTTATTGCCATGTCATAAATAAATTCTTGTCCCTTCTTCTGTGGAAGCACCCTGTG----GTCTGGGTCCTGGCAGGAAAGAGATGGCACAGAAGGAAGACATGTtttaaagaggttctggtagggctaagaaagtcacaa----------ggggcactgaagctccctgggatgatctgtagcaggaaatggtttgcatttctgagcttgaaagagcaaggaagggagcagtttctagaactccggcaaatctgtagctttcactaggggcagcccggcatgcctatggctgtagatagaggcctgaagtgattacagaatcacagagctgcccagagtaagagagggaaatgaaaaccctgagttactcctcctcccacactctcatctcctgcaggtgcctgttatcatccacacccaagcacaagccagatggtgaaggagcacaggccatgtcgtctgtctgtcatagttgcctcccagtgtagggggcaggatggaagagagtggatgatggctctgtgaggagatggaaGCTGAGAATAATGCGCTTGCTTACAGTGTTCACATTCTTCATGGAATTTACTTAAATACACTAGCATTTGCTCTCATCCAAAATTATACCTTTAAAAAGCAAC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30219006 781 + 173848474 Aggcctgggcacactcactcacgcctgtaatcttagcactttgggaaggctaaggcaaagggattgcttgaggccagcagttaaagaccaacctcggcaacataacaagacccagtctct---tccaaaaCAAATTGAATTAGCATTGTGAATAGATATGTTATTGCCATGTCATAAATAAATTCTTGTCCCTTCTTCTGTGGGAGCACCCTGTG----GTCTGGGTCCTGGCAGGAAAGAGATGGCACAGAAGGAAGACATGTtttaaagaggttctggcagggctaagaaagtcacaa----------ggggcactgaagctccctgggatgatctgtagcaggaaatggtttgcatttctgagcttgaaagagcaaggaagggagcagtttctagaactccagcaaatctgtagctttcactaggggcagcccggcatgcctatggctgtagatagaggcctgaagtgattacagaatcacagagctgcccagagtaagagagggaaatgaaaaccctgagttactcctcctcccacactcccatctcctgcaggtgcctgttatcatccacacccaagcacaagccagatggtgaaggagcacaggccatgtcgtctgtctgtcatagttgcctcccagtgtagggggcaggatggaagagagtggatgatggctctgtgaggagatggaaGCTGAGAATAATGAGCTTGCTTACAGTGTTCACATTCTTCATGGAATTTACTTAAATACACTAGCATTTGCTCTCATCCAAAATTATACCTTTAAAAAGCAAC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6019899 780 +   6154872 Aggcctgggcacactcactcacgcctgtaaccttagcactttgggaaggctaagggaaagggattgcttgaggccagtagttaaagaccaacctcggcaacataacaagacccagtctct---tccaaaaCAAATTGAATTAGCATTGTGAATAGATATGTTATTGCCATGTCATATATAAATTCTTGTCCCTTCTTCTGTGGGAGCACCCCATG----GTCTGGGTCCAGGCAGGAAAGAGATGGCACAGAAGGAAGACATGTtttaaagaggttctggcagggctaagaaagtcacaa----------ggggcactgaagctccctgggatgatctgtagcaggaaatggtttgcatttctgagcttgaaagagcaaggaagggagcagtttctagaactccggcaaatctgtagctttcactaggggcagcccggcatggctatggctgtagatagaggcctgaagtgattacagaatcacagagctgcccagagtaagagagggaaatgaaaaccctgagttactcctcctcccacactcccatctcctgcaggtgcctgttatcatccacacccaagcacaagccagatggtgaaggagcacaggccatgtcgtctgtctgtcatagttgtctcccagtgta-ggggcaggatggaagagagcggatgatggctctgtgaggagatggaaGCTGAGAATAATGCACTTGCTTACAGTGTTCACATTCTTCATGGAATTTACTTAAATATACTAGCATTTGCTCTAATCCAAAATTATACCTTTAAAAAGCAAC
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30220769 764 + 172585720 AGTCctgggcacactcgctcacgcctatagtcctagtacttt-ggaaggctgaggcaaggggattgcttgagtccagtagttgaagaccagcctgggcaacatagcaagatccagtctct---accaaaaCAAACTGAATTAACATTGTGAATAGATGTGTTATT------CCATAAATAAATTCTTGTCACTTCTTTTGTGGGAACACCCTGTG----GTCCGGGTCCTGGCAGGAAAGAGATGAGGCAGAAGGAAGACACATAttacagaggtgctggcagggctaagaaagccacaag---------ggggcgctgaagctccctgggatgatctgtagcaggaaac----tgcaactctgagcttgaaagagcaaggaagggagcaatttccagaactcaggccaacctgcagctttcagtagggatagtcccgcatccctggggctgtaggtagaggcctgaagtgattacagaaccac--agctgcccagagggagtgaggga-atgaaaaccctgagttacttctcctcccacacccccatcccctggaggtgtctgttatcatccaaacccaagcagaagccagatgccaaaggagcataggccgtg----ccctttgtcatggttgcctcccagtgcaggggacgggatggaatagagtggacgatggctctgtgaggagatggaaGCTGAGAATAATGCACTCACCTACAATGTTCACATTCTTCACAGAATTTACTTAAATATATGAGTGTTTGCTTTAATCCAAAAGTATGGCTTTAAAAAGCAAC
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002711v1         693868 764 +    766320 Aggcctgggcacactcgctcacgcctatagtcctagtacttt-ggaaggctgaggcaaggggattgcttgaggccagtagttgaagaccagcctgggcaacatagcaagatccagtctct---accgaaaCAAACTGAATTAACATTGTGAATAGATGTGTTATT------CCATAAATAAATTCTTGTCACTTCTTTTGTGGGAACACCCCGTG----GTCGGGGT-CTGGCAGGAAAGAGATGAGGCAGAAGGAAGACACATAttacagaggtgctggcagggctaagaaagccacaag---------ggggcgctgaagctccctgggatgatctgtagcaggaaac----tgcaactctgagcttgaaagagcaaggaagggagcaatttccagaactcaggcaaacctgcagctttcagtaggcatagtcccgcat-cctggggctgtaggtagaggcctgaagtgattacagaaccacagagctgcccagagggagtgaggga-atgaaaaccctgagttacttctcctcccacaccctcatcccctggaggtgtctgttatcatccaaacccaagcagaagccagatgccaaaggagcacaggccgtg----tcctctgtcatggttgcctcccagtgcaggggatgggatggaatagagtggacgatggctctgtgaggagatggaaGCTGAGAATAATGCACTCACCTACAATGTTCGCATTCTTCGCAGAATTTACTTAAATATATGAGTGTTTGCTTTAATCCAAAAGTATGGCTTTAAAAAGCAAC
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29138163 764 -  71996105 Aggcctgggcacactcgcttacgcctatagtcctagtacttt-ggaaggctgaggcaaggggattgcttgaggccagtagttgaagaccagcctgggcaacatagcaagatccagtctct---accaaaaCAAACTGAATTAACATTGTGAATAGATGTGTTATT------CCATAAATAAATTCTTGTCACTTCTTTTGTGGGAACACCCTGTG----GTCCGGGTCCTGGCAGGAAAGAGATGAGGCAGAAGGAAGACACATAttacagaggtgctggcagggctaagaaagccacaag---------ggggcgctgaagctccctgggatgatctgtagcaggaaac----tgcaactctgagcttgaaagagcaaggaagggagcaatttccagaactcaggcaaacctgcagctttcagtagggatagtcccacattcctggggctgtaggtagaggcctgaagtgattacagaaccac--aactgcccagagggagtgaggga-atgaaaaccctgagttacttttcctcccacacccccatcccctggaggtgtctgttatcatccaaactcaagcagaagccagatgccaaaggagcacaggccgtg----ccctctgtcatggttgcctcccagtgcagaggacgggatggaatagagtggacgatggctctgtgaggagatggaagatGAGAATAATGCACTCACCTACAATGTTCACGTTCTTCACAGAATTTACTTAAATATATGAATGTTTGCTTTAATCCAAAAGTATGGCTTTAAAAAGCAAC
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2786279 777 -   3067355 AGggctgggtacactgggtctcatctgtaatcctaacacttt-aggaagtcaaggcagggagattggttgaggccaggagttggagaccagcctgggcaacacagcaagactctatctctaaaattaaaaaaaGTCAAATTAACATCATGAATACATGTGCTATTGCCATATCAAAAATAAATTCTTGTAACTTCTTTTGTGGGAGCACCCTGTGGTCAGTCAGGGTTCTGGTAGGAAAGAGATGACATAGAAGGAAGACACATATTACAGAGGTGCTGGCAGGGCTAAGAAAGTCATAAGGCTAAGAAAGTCACGCTGAAGCTCCTTGGGATGATCAGTGGCAGGAAACAATTTCCATCTCTGAGCTTGAAAGAGCAAGGAAGGGAGCAGTTTCCAGAACTCAGGGAAATCTGTGGCTTTCACTAGGGGCA----------------GCTGCAggtagaagatggcaatgattacagaaccacagagctgcccggagggagagagggatatgaaaaccctgagtcatttcttccccaacactctcatttcctgcaggtgcctgttattttccaaacccaagcagaagccagatgctgaaggagcacaagccgtg----ctgtctatcatggttgcctctcagtgcagggggcaaggtagaagagagtggacgatggctctgtgaggagacagaaGCTGAGAATAATGTACTCGCCTACAGTGTTCACGTTATTCACGGAATTTACTTAAATATACTAGCATTTGTTTTAATCCAGAAGTATGGCTTTAAAAAGCAAC
i colAng1.NW_012115566v1       C 0 I 18
e saiBol1.JH378364                54315 2911 +    187130 I
e otoGar3.GL873550             16798716 4104 -  18854210 I
e aotNan1.NW_018509740v1         411676 5568 -    457564 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=8334.000000
s hg38.chr6_GL000254v2_alt      1023497 5 +   4827813 GTTTC
s panTro5.chr6                 29986046 5 + 175400573 GTTTC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30219787 5 + 173848474 GTTTC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6020679 5 +   6154872 GTTTC
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30221533 5 + 172585720 ATTTC
i rheMac8.chr4                 C 0 I 3
s cerAty1.NW_012002711v1         694632 5 +    766320 ATTTC
i cerAty1.NW_012002711v1       C 0 I 8
s chlSab2.chr17                29138927 5 -  71996105 ATTTC
i chlSab2.chr17                C 0 I 3
e saiBol1.JH378364                54315 2911 +    187130 I
e otoGar3.GL873550             16798716 4104 -  18854210 I
e aotNan1.NW_018509740v1         411676 5568 -    457564 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2787056 18 -   3067355 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=165995.000000
s hg38.chr6_GL000254v2_alt      1023502 305 +   4827813 ggccaggcatgatgactcacgcctgtaatcccagtactttgggaggccgaggcgggtggatcacctgaggtcaggagttcgagactagcctggccaaagtggtgaaaccctgtctccactaaaaatgcaaaaattagctgggcatgatggtgggcgcctgtaacctcagctacttgagaggctgaggtaagagaattgcttcaacccagtaggcagaggctgcagtgagccaaaatcatgccactgcactccagcctgagtgacagagtgagactccgtct-c----------aaaaaaaaaaaaaaaaaaTCATG
s panTro5.chr6                 29986051 303 + 175400573 ggccaggcatgatgactcacgcctgtaatcccagtactttgggaggccgaggtgggtggatcacctgaggtcaggagttcgagactagcctggccaaagtggtgaaaccctgtctccactaaaaatgcaaaaattagctgggcatgatggtgggcacctgtaacctcagctacttgagaggctgaggtaagagaattgcttcaacccaggaggcagaggctgcagtgagccaaaatcatgctactgcactccagcctgagtgacagagtgagactccgtct-c------------aaaaaaaaaaaaaaaaTCATG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30219792 304 + 173848474 ggccaggcatgatgactcacgcctgtaatcccagtactttgggaggccgaggtgggtggatcacctgaggtcaggagttcgagactagcctggccaaagtggtgaaaccctgtctccactaaaaatgcaaaaattagctgggcatgatggtgggcacctgtaacctcagctacttgagaggctgaggtaagagaattgcttcaacccaggaggcagaggctgcagtgagccaaaatcatgccactgcactccagcctgagtgacagagtgagactccgtctac------------aaaaaaaaaaaaaaaaTCATG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6020684 315 +   6154872 ggccaggcatgatgacttacgcctgtaatcccagtactttgggaggccgaggcgggtggatcacctgaggtcaggagttcgagactagcctggccaaagtggtgaaaccctgtctccactaaaaatgcaaaaattagctgggcgtggtgatgggcgcctgtaacctcagctacttgagaggctgaggtaagagaattgcttcaacccaggaggcagaggctgcagtgagccaaaatcatgccactgcactccagcctgagtgacagagtgagactccgtct-caaaaaaaaaaaaaaaaaaaaaaaaaaaaTCATG
i gorGor5.CYUI01015250v1       C 0 C 0
e saiBol1.JH378364                54315 2911 +    187130 I
e otoGar3.GL873550             16798716 4104 -  18854210 I
e aotNan1.NW_018509740v1         411676 5568 -    457564 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2787056  18 -   3067355 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e chlSab2.chr17                29138932   3 -  71996105 I
e cerAty1.NW_012002711v1         694637   8 +    766320 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e rheMac8.chr4                 30221538   3 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=5113.000000
s hg38.chr6_GL000254v2_alt      1023807 5 +   4827813 TATAT
s panTro5.chr6                 29986354 5 + 175400573 TATAT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30220096 5 + 173848474 TATAT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6020999 5 +   6154872 TATAT
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30221541 5 + 172585720 TATAA
i rheMac8.chr4                 I 3 C 0
s chlSab2.chr17                29138935 5 -  71996105 TATAA
i chlSab2.chr17                I 3 C 0
e saiBol1.JH378364                54315 2911 +    187130 I
e otoGar3.GL873550             16798716 4104 -  18854210 I
e aotNan1.NW_018509740v1         411676 5568 -    457564 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2787056 18 -   3067355 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e cerAty1.NW_012002711v1         694637 8 +    766320 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=9933.000000
s hg38.chr6_GL000254v2_alt      1023812 5 +   4827813 ATGCT
s panTro5.chr6                 29986359 5 + 175400573 ATGCT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30220101 5 + 173848474 ATGCT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6021004 5 +   6154872 ATGCT
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30221546 5 + 172585720 ATGCT
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002711v1         694645 5 +    766320 ATGCT
i cerAty1.NW_012002711v1       I 8 C 0
s chlSab2.chr17                29138940 5 -  71996105 ATGCT
i chlSab2.chr17                C 0 C 0
e saiBol1.JH378364                54315 2911 +    187130 I
e otoGar3.GL873550             16798716 4104 -  18854210 I
e aotNan1.NW_018509740v1         411676 5568 -    457564 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2787056 18 -   3067355 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=3224956.000000
s hg38.chr6_GL000254v2_alt      1023817 1426 +   4827813 TAGCAGGTAGTAACATTGAAGAGTACCTAACTCTCCTTCCCTATCTCCACATGGGAC-GTATAACTCATAAATAAATACCTTAAATTATTTGAGTATAAGCCATAAAAGCAGAGTCTGGCTCATATAAGCAAAAGGAAGTTGCTGGGCAGCTGTGGGTGAGGTTCACAGAATCATAGATGCTTCCAAAGTACCAGGACAGCACCAAGGAGCAGGCAGCAAGCCCTGACCAGTCTCACTGGACTCACCTGTGGAGTGGGAGAATTGTCACTGTTTCCTGATATCTTGTCATTGCTGAGCTTTAAATTCTGGAATAGTTTACTTAAATGGCTTAGTTTGGATCTCATAAATTTCTTATTTGCTTGTGATTTAATTTCAGGGATAGAGTCAATATTTGAATTTGACTCTATCCCTAAAAATGAATTCAATTTTGAAGTTGAATCCAAATTCCATTTCAA---------------GGATAGAGTCAATAGGAATAG-------------AGTCAATGTTTTCCCTTAATGGGAGCTCCTTTTCTCCATTTATCTTCTTAAAGCAGGGGGAAGGGGATGAGTCTTTCAAGTTCCCATGGACCCATGGACATCATGAGATCAACCTAATTGCCCTCATTCCATTTTCCTTTACTTTGCAGAAAAGAAACAAATTCCTTTCCACCCAAAATATGACAGCGCCTGTGGTCCAGGGCTGGAGCCCATAGTGGATGCCCAGCAGCCAACTTCCTGGAATTGAGACCTCCCCAGCAGGCTTGGGGGTGAAAAGAGAAACTAGACTCCAAAAGGGACACCAGTGCTCTGTT-----------GGGGAGAGAGGAGCACACCACTGCATCCCACCCTGAAGAATGGGAGTGAGAAGAGAGGACAGGTGAACCCACCATGGCTCCAGTGAGATGGGAGCGGGGAACGCCCAAGAAGGAGGACAGCCATGGGGTGGCCCCAGCCAAAGCCACCAGACATCATTACATGTCTGGGGCCCTCTCAGGCCGACATGAGTTTTACTGCTCCacacactcttttgttaagagctagctgtcagtagatcagtg--------------------------agagagcaactttgatacagaggaaaccAT-GCCTGAAATGGGTCATCCCAGAAGAATTTAGTAGTAGGTTCTATGCTTCCCTCCAGGGCCTCATGGGCGTGGGCAACTTTTTTTTTTTTCCAGCCACTCACCCTAGGTGATGAAGAAAGCTCTCTGAACTGTGTCCTTGCTGGGCACACAGGCCCCTACCACATGTACATGGCATGGGAGTCATGGCTAAGGCAGGGTGAGACTCCTATTTGAGGCCAGGAAAAGCTAATGACCCTACATTTGGTTCAGTCCTTGTGGGGTCCTGACTAGGGTGTGGGCCACTGTGTTCCCACAGATGCTCTGTTAGCCCTTAGGCTGTGAGATACACAGGCAAATGTTATATTGAAGCCTTTGTTTCTCTTA
s panTro5.chr6                 29986364 1425 + 175400573 TAGCAGGTAGTAACATTGAAGAGTACCTAACTCTCCTTCCCTATCTCCACATGGGAC-GTATAACTCATAAATAAATAACTTAAATTATTTGAGTATAAGCCATAAAAGCAGAGTCTGGCTCATATAAGCAAAAGGAAGTTGCTGGGCAGCTGTGGGTGAGGTTCACAGAATCATAGATGCTTCCAAAGTACCAGGACAGCACCAAGGAGCAGGCAGCAAGCCCTGACCAGTCTCACTGGACTCACCTGTGGAGTGGGAGAATTGTCACTGTTTCCTGATATCTTGTCATTGCTGAGCTTTAAATTCTGGAATAGTTTACTTAAATGGCTTAGTTTGGATCTCATAAATTTCTTATTTGCTCGTGATTTAATTTCAGGGATAGAGTCAATATTTGAATTTGACTCTATCCCTAAAAATGAATTCAATTTTGAAGTTGAATCCAAATTCCATTTCAA---------------GGATAGAGTCAATAGGAATAG-------------AGTCAATGTTTTCCCTTAATGGGAGCTCCTTTTCTCCATTTATCTTCTTAAAGCAGGGGGAAGGGGATGAGTCTTTCAAGTTCCCATGGACCCATGGACATCATGAGATCAACCTAATTGCCCTCATTCCATTTTCCTTTACTTTGCAGAAAAGAAACAAATTCCTTTCCACGCAAAATATGACAGCGCCTGTGGTCCAGGGCTGGAGCCCATAGTGGATGCCCAGCAGCCAACTTCCTGGAATTGATTCCTCCCCAGCAGGCTTGGGGGTGAAAAGAGAAACTAGACTCCAAAAGGGACACCAGTGCTCTGTT-----------GGGGAGAGAGGAGCACACCACTGCATCCCACCCTGAAGAATGGGAGTGAGAAGAGAGGACAGGTGAACCCACCATGACTCCAGTGAGATGGGAGCGGGGAATGCCCAAGAAGGAGGACAGCCATGGGGTGGCCCGAGCCAAAGCCACCAGACATCATTACATGTCTGGGGCCCTCTCAGGCCGACATGAGTTTTACTGCTCCacacactcttttgttaagagctagctgtcagtagatcagtg--------------------------agagagcaactttgatacagaggaaaccat-gcctgaaatgggtcagcccagaagaatttagtagtaggttcTATGCTTCCCTCCAGAGCCTCATGGGCGTGGGCAAC-TTTTTTTTTTTCCAGCCACACACCCTAGGTAATGAAGAAAGCTCTCTGAACTGTGTCCTTGCTGGGCACACAGGCCCCTACCACATGTACATGGCATGGGAGTCATGGCTAAGGCAGGGTGAGACTCCTATTTGAGGCCAGGAAAAGCTAATGACCCTACATTTGGTTCAGTCCTTGTGGGGTCCTGACTAGGGTGTGGGCCACTGTGTTCCCACAGATGCTCTGTTAGCCCTTAGGCTGTGAGATAAACAGGCAAATGTTATATTGAAGCCTTTGTTTCTCTTA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30220106 1424 + 173848474 TAGCAGGTAGTAACATTGAAGAGTACCTAACTCTCCTTCCCTATCTCCACATGGGAC-GTATAACTCATAAATAAATAACTTAAATTATTTCAGTATAAGCCATAAAAGCAGAGTCTGGCTCATATAAGCAAAAGGAAGTTGCTGGGCAGCTGTGGGTGAGGTTCACAGAATCATAGATGCTTCCAAAGTACCAGGACAGCACCAAGGAGCAGGCAGCAAGCTCTGACCAGTCTCACTGGACTCACCTGTGGAGTGGGAGAATTGTCACTGTTTCCTGATATCTTGTCATTGCTGAGCTTTAAATTCTGGAATACTTTACTTAAATGGCTTAGTTTGGATCTCATAAATTTCTTATTTGCTCGTGATTTAATTTCAGGGATAGAGTCAATATTTGAATTTGACTCTATCCCTAAAAATGAATTCAATTTTGAAGTTGAATCCAAATTCCATTTCAA---------------GGATAGAGTCAATAGGAATAG-------------AGTCAATGTTTTCCCTTAATGGGAGCTCCTTTTCTCCATTTATCTTCTTAAAGCAGGGGGAAGGGGATGAGTCTTTCAAGTTCCCATGGACCCATGGACATCATGAGATCAACCTAATTGCCCTCATTCCATTTTCCTTTACTTTGCAGAAAAGAAACAAATTCCTTTCCACGCAAAATATGACAGCGCCTGTGGTCCAGGGCTGGAGCCCATAGTGGATGCCCAGCAGCCAACTTCCTGGAATTGATTCCTCCCCAGCAGGCTTGGGGGTGAAAAGAGAAACTAGACTCCAAAAGGGACACCAGTGCTCTGTT-----------GGGGAGAGAGGAGCACACCACTGCATCCCACCCTGAAGAATGGGAGTGAGAAGAGAGGACAGGTGAACCCACCATGACTCCAGTGAGATGGGAGCAGAGAATGCCCAAGAAGGAGGACAGCCATGGGGTGGCCCGAGCCAAAGCCACCAGACATCATTACATGTCTGGGGCCCTCTCAGGCCGACATGAGTTTTACTGCTCCacacactcttttgttaagagctagctgtcagtagatcagtg--------------------------agagagcaactttgatacagaggaaaccat-gcctgaaatgggtcagcccagaagaatttagtagtaggttcTATGCTTCCCTCCAGAGCCTCATGGGCGTGGGCAAC--TTTTTTTTTTCCAGCCACACACCCTAGGTAATGAAGAAAGCTCTCTGAACTGTGTCCTTGCTGGGCACACAGGCCCCTACCACATGTACATGGCATGGGAGTCATGGCTAAGGCAGGGTGAGACTCCTATTTGAGGCCAGGAAAAGCTAATGACCCTACATTTGGTTCAGTCCTTGTGGGGTCCTGACTAGGGTGTGGGCCACTGTGTTCCCACAGATGCTCTGTTAGCCCTTAGGCTGTGAGATAAACAGGCAAATGTTATATTGAAGCCTTTGTTTCTCTTA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6021009 1451 +   6154872 TAGCAGGTAGTAACATTGAAGAGTACCTAACTCTCCTTCCCTATCTCCACATGGGAG-GTATAACTCATAAACAAATAACTTAAATTATTTGAGTATAAGCCATAAAAGCAGAGTCTGGCTCATATAAGCAAAAGGAAGTTGCTGGGCAGCTGTGGGTGAGGTTCACAGAATCATAGATGCTTCCAAAGTACCAGGACAGCACCAAGGAGCAGGCAGCAAGCCCTGACCAGTCTCACTGGACTCACCTGTGGAGTGTGAGAATTGTCACTGTTTCCTGATATCTTGTCATTGCTGAGCTTTAAATTCTGGAATACTTTACTTAAATGGCTTAGTTTGGATCTCATAAATTTCTTATTTGCTCGTGATTTAATTTCAGGGATAGAGTCAATATTTGAATTTGACTCTATCCCTAAAAATGAATTCAATTTTGAAGTTGAATCCAAATTCCATTTCAA---------------GGATAGAGTCAATAGGGATAG-------------AGTCAATGTTTTCCCTTAATGGGAGCTCCTTTTCTCCATTTATCTTCTTAAAGCAGGGGTAAGGGGATGAGTCTTTCAAGTTCCCATGGACCCATGGACATCATGAGATCAACCTAATTGCCCTCATTCCATTTTTCTTTACTTTGCAGAAAAGAAACAAATTCCTTTCCACCCAAAATATGACAGCGCCTGTGGTCCAGGGCTGGAGCCCATAGTGGATGCCCAGCAGCCAACTTCCTGGAATTGAGACCTCCCCAGCAGGCTTGGGGGTGAAAAGAGAAATGAGACTCCAAAAGGGACACCAGTGCTGTGTT-----------GGGGAGAGAGGAGCACACCACTGCATCCCACCCTGAAGAATGGGAGTGAGAAGAGAGGACAGGTGAACCCACCATAGCTCCAGTGAGATGGGAGGGGGGAACACCCAAGAAGGAGAACAGCCATGGGGCGGCCCGAGCCAAAGCCACCAGACATCATTACACGTCTGGGGCCCTCTCAGGCCGACATGAGTTTTACTGCTCCACACACTCTTTTGTTAAGAGCTAACTGTCAGTAGATCAGTTAGCAACTGATCAGTTAGCAGTAGATCAGAGAGCAACTTTGATACAGAGGAAACCAT-GCCTGAAATGGGTCAGCCCAGAAGAATTTAGTAGTAGGTTCTATGCTTCCCTCCAGAGCCTCATGGGCGTGGGCAAC-TTTTTTTTTTTCCAGCCACACACCCTAGGTAATGAAGAAAGCTCTCTGAACTGTGTCCTTGCTGGGCACACAGGCCCCTACCACATGTACATGGCATGGGAGTCATGGCTAAGGCAGGGTGAGACTCCTATTTGAGGCCAGGAAAAGCTAATGACCCTACATTTGGTTCAGTCCTTGTGGGGTCCTGACTGGGGTGTGGGCCGCTGTGTTCCCACAGATGCTCTGTTAGCCCTTAGGCTGTGAGATAAACAGGCAAATGTTATATTGAAGCCTTTGTTTCTCTTA
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30221551 1405 + 172585720 TAGCAGGTAGTAACATTGAAAAGTA-CCAACTCTCCTTCCCTTTCTCCACATGGGACTGTATAAGTCATAAATTAATAACTTGAATTACTTGGGTACAAGCCATAAAAGCAGAGTCGGGCTCACATAAGCAAAAGGAAGTTGTTGGGCAACCATGGGTGAGGTTCACAGAATCACAGATGCTTCTAAAGTACCAGGACAGCACCAAGCAGCAGGCAGCAAGCCCTGACCAGTCTCACTGGCCTCACCTGTGGAGTGGGAGAATTGTCACTGTTTCCTGGTATCTTGTCATTGCTGAGCTTTAAATTCTGGAATAGTTTACTTAAATGGCTTAGTTTGAATCTCATAAATTTCTTATTTGCTCATGATTTAATTTCAGGGATAGAGTCAATATTTGAATTTGACTCTACCTCTGAAAATGATTTCAA-TTTGAAATTGAATCTAAATTCCATTTCAA---------------GGATAGAGTCAATAGGGATAG-------------AGTCAATGTTTTCCCTTAATGGGAGCTCCTTTTCTCCGTTTATCTTGTTAAAGTAGGGGGAAGAGGAAGAGTCTTTCAAGTTCC-----------------CATGAGAGCAACCTAATTGCCCTCA-TCTATTTTCCTTTACTTTCCAGAAAAGAATCAAATTCCTTTCCACCCAAAATATGACAGCACCTGTGGTCCAGGGCTGGAGACCATAGTGGATGCCCAGCAGCCAACTTCCTAGGATTATGGCGTCCCCAGCAGGCCTGGAGATGAAAAGAGAAACTAGGCTCCAAAGGGGACACCAGTGCTATGTT-----------GGGGAGAGAGGAGCACACCATGGCACCCCACTCTGAAGAATGGGAGTGAGAAGAGAGGACAGGTGAACCCGACACAGCTCCAGTGAGATGGGAGGGGGGAATGCCCAGGAAGGAGAACAGCCATGGGGCAG-CCCAGCCAAAGCCACCAGACATCATTACATGTCTGGGGCCTTCTCAGGTCGACGTGGATTTTACCGCTCCACACACTCTTGTG-TAAGGGCTAACTGTCAGTAGATCAGTG--------------------------AGAGAGCAACTTTGATACAGAGGAAACCATGGCCTGAAATGGGTCAGCCCGGAAGAATTTAGTAGTAGGTTCTATGCTTCCCTCCAGAGCCTCATGGACGTAGGCAAC-TTTTTTTTTTTCCAACCACACACCCTAGGTAATGAAGAAAGCTCTCTGAACTGTGTCCTTGCTGGGCACACAGACACCTGCCACATGCACATGGTATAGGAGTCATGGCTGAGGCAGAGTGAGACTCCTATCTGAGGCCAGGAAAAGCTAATGACCCCACATTTGGTTCAGTCCTTgcggggtcctgactggggtgtgtgccgctgtgttcccacagatgctttgttagccctttggctctaagataaacaggcagatgttatattgaagcctttgtttctctta
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002711v1         694650 1407 +    766320 TAGCAGGTAGTAACATTGAAAAGTA-CCAACTCTCCTTCCCTTTCTCCACATGGGACTGTATAAGTCATAAATTAATAACTTGAATTACTTGGGTACAAGCCATAAAAGCAGAGTCGGGCTCACATAAGTAAAAGGAAGTTGTTGGGCAACTGTGGGTGAGGTTCACAGAATCACAGACGCTTCTAAAGTACCAGGACAGCACCAAGCAGCAGGCAGCAAGCCCTGACCAGTCTCACTGGACTCACCTGTGGAGTGGGAGAATTGTCACTGTTTCCTGGTATCTTGTCATTGCTGAGCTTTAAATTCTGGAATAGTTTACTTAAATGGCTTAGTTTAGATATCATAAATTTCTTATTTGTTTGTGATTTAATTTCAGGGATAGAGTCAATATTTGAATTTGACTCTACCTCTGAAAATGGtttcaa-tttgaaattgaatctaaattccatttcaa---------------GGATAGAGTCAATAGGGATAG-------------AGTCAATGTTTTCCCTCAATGGGAGCTCCTTTTCTCCGTTTATCTTGTTAGAGTAGGGGGAAGAGGAAGAGTCTTTCAAGTTCC-----------------CATGAGAGCAACCTAATTGCCCTCA-TCCATTTTCCTTTACTTTCCAGAAAAGAATCAAATTCCTTTCCACCCAAAATATGACAGCACCTGTGGTCCAGGGCTGGAGACCATAGTGGATGCCCAGCAGCCAACTTCCTAGGATTATGGCGTCCCCAGCAGGCCTGGAGATGAAAAGAGAAACTAGGCTCCAAAGGGGACACCAGTGCTGTGTT-----------GGGGAGAGAGGAGCACACCATGGCTCCCCACTCTGAAGGATGGGAGCGAGAAGAGAGGACAGGTGAACCCGACACAGCTCCAGTGAGATGGGAGGGGGGAATGCCCAGGAAGGAGAACAGCCATGGGGCAG-CCCAGCCAAGGCCACCAGACATCATTACATGTCTGGGGCCTTCTCAGGTCGACGTGGGTTTTACCGCTCCacacactcttgtgttaagggctaactgtcagtagatcagtg--------------------------agagagcaactttgatacagaggaaaccatggcctgaaatgggtcagcccggaagaatttagtagtaggttctatgcttccctccagagcctcatggacgtaggcaacttttttttttttccaaccacacaccctaggtaatgaagaaagctctctgaactgtgtccttgctgggcacacagacccctgccacatgcacatggtataggagtcatggctgaggcagagtgagactcctatctgaggccaggaaaagctaatgaccccacatttggttcagtccttgtggggtcctgactggggtgtgtgccgctgtgttcccacagatgctttgttagccctttggctctaagataaacaggcagatgttatattgaagcctttgtttctctta
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29138945 1421 -  71996105 TAGCAGGTAGTAACACTGAAAAGTA-CCAACTCTCCTTCCCTTTCTCCACATGGGACTGTATAAGTCATAAATTAATAATTTGAATTACTTGGGTACAAGCCATAAAAGCAGAGTTGGGCTCACATAAGCAAAAGGAAGTTGTTGGGCAACTGTGGGTGAGGTTCACAGAATCACAGATGCTTCTAAAGTACCAGGACAGCACCAAGCAGCAGGCAGCAAGCCCTGACCAGTCTCACTGGACTCACCTGTGGAGTGGGAGAATTGTCACTGTTTCCTGGTATCTTGTCATTGCTGAGTTTTAAATTCTGGAATAGTTTACTTAAATGGCTTAGTTTAGATATCATAAATTTCTTATTTGTTTGTGATTTAATTTCAGGGATAGAGTCAATatttgaatttgactctacctctgaaaatgatttcaa-tttgaaattgaatCCAAATTCCACTTCAAGGATAGAGTCAATAGGGATAGAGTCAATAGGGATAG-------------AGTCAATGTTTTCCCTTAATGGGAGCTCCTTTTCTCTGTTTATCTTGTTAAAGTAGGGGGAAGAGGAAGAGTCTTTCAAGTTCC-----------------CATTAGAGCAACCTAATTGCCCTCA-TCTATTTTCCTTTACTTTCCAGAAAAGAATCAAATTCCTTTCCACCCAAACTATGACAGCACCTGTGGTCCAGGGCTGGAGACCACAGTGGATGCCCAGCAGCCAACTTCCTAGGATTATGGTGTCCCCAGCAGGCCTGGAGGTGAAAAGAGAAACTAGGCTCCAAAGGGGACACCAGTGCTGTGTT-----------GGGGAGAGAGGAGCACACCATGGCACCCCACTCTGAAGAATGGGAGTGAGAAGAGAGGACAGGTGAACCCGACACAGCTCTAGTGAGATGGGAGGGGGGAATGCCCAGGAAGGAGAACAGCCATGGGGCAGCCCCAGCCAAAGCCACCAGACATCATTACATGTCTGGGGCCTTCTCAGGTCGACGTGGATTTTACCGCTCCACACACTCTTGTGTTAAGGGCTAACTGTCAGTAGATCAGTG--------------------------AGAGAGCAACTTTGATACAGAGGAAACCATGGCCTGAAATGGGTCAGCCCGGAAGAATTTAGTAGTAGGTTCTATGCTTCCCTCCAGAGCCTCATGGACGTAGGCAAC--TTTTTTTTTTCCAACCACACACCCTAGGTAATGAAGAAAGCTCTCTGAACTGTGTCCTTGCTGGGCACACAGACCCCTGCCACATGCACATGGTATGGGAGTCATGACTGAGGCAGAGTGAGACTCCTATCTGAGGCCAGGAAAAGCTAATGACCCCACATTTGGTTCAGTCCTTGCGGGGTCCTGACTGGGGTGTGTGCCGCTGTGTTCCCACAGATGCTTTGTTAGCCCTTTGGCTCTAAGATAAACAGGCAGATGTTATATTGAAGCCTTTGTTTCTCTTA
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2787074 1443 -   3067355 TAGCAGATAGTAAAATTGAATGGTATCTAACTCTCCTTCCCTTTCTCCACATAAAACTGTATAACTCATAAGTGAGTACTTTGAATTATTTGGGTGTAAGCCTTAAAAGTAGAACCTGGCTCATATAAGTAAAAGGAAGTTGTTGGGCAGCTGTGGGTGAGGTTCACGGAATCACAGATGCTTCCAAAGTACCAGGATAGCACC-AGCAGCAGGCAGCAAGCCCTGACCAGTCTCACTAGACTTGACCATGGAGTGGAAGAATTGTCACTGTTTCCTGATATCTTGTCATTCCTGAGTTTTAAATTCTGGAGTAGTTTACCCAAATGGCTTAGTTTAAATCTTACGTATTTCTTATTTGCTCATGACTTAATTTCAGGGATAGAGTCAATATTTGGTTTTGACTCTATCACTCAAAATGAATTCAGTTTTGACATTGAATCCAAATTCAATTTCAG---------------GGATAGAGTCAATAAGAATAGCATCAATAAGGATAGTCAATATTTTCGCTTAATGGAAACTCCTTTCCTCTGTTTATCTTCCTAAAGTAGGGGGAAGGGGAAGAGTCTTTCAAGTTCCAATGGACCCATGTACATCATAACATCAATCTAATTGCCGTCC-CCCATTTTCCTTTGCTTTCCACAAAAGAATCAAATTTCTTTCC-CCTAAAATATGACAACGCCTGTGATCCAGGGCTGGATCCCATAGCGGAGGCCCAGAACCCCCCTTCCTGGGATTATGACCTCCCCAGAAGGCCTGGGGGTGAAAAGAGAAACTAGGCTCCAAAGGGGACATCAGTGCTCTGTTGTCCAGCAGCAGGAGAGAGTGGGGCACAACACAGCACCCCACCCTGAAGAATGGGAGTGAGAAGAGAGGACGGGTGAACCCACCACAGCCCCAGTGAGATGGGAGGGGGCATTGTCCAGGAAGGAGAACAGCCGTGGGACAGCCCCAGCCAAAGCCACCAGACATCATTGCATGTCTGGGCCCCCCTCAAGCCAACATGAGTTTTAACACTCcacactcttttgt--taagagctagctgtcagtaaatcagtg--------------------------agagaacaactttgatacagtagaaaccatggcctgaactgggtcatgccagaagaatttagtagtaggttctacgcttccctccagagcttcataggcatggacaac----tttttttcccagccacacaccctaggtaatgaagaaagctctctgaactgtgttcttgatgggcaaacaggcccctaccacatgcacaaggtgtggaagtcatggccaaggcagagtgggacacctatctgaggccaggaaaagctaatgaccctgcattttgttcagtccctgtggagtcctgacctgggtgtgtgctgctgtattcccactgatgttctcctaaccctctggctctgagataagcaggtacatagcatattgaaggcttggtttctctta
i colAng1.NW_012115566v1       I 18 N 0
e saiBol1.JH378364                54315 2911 +    187130 I
e otoGar3.GL873550             16798716 4104 -  18854210 I
e aotNan1.NW_018509740v1         411676 5568 -    457564 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=306900.000000
s hg38.chr6_GL000254v2_alt      1025243 124 +   4827813 CACGGAGGCAACACTACTGCAGCAGAGCAAACCTTATTGTATCAGTGCACCAACCCCAAGTTCATGTTCATTACAGCAGGAAAAACTAACATGTGGTGAATTCTGCCTCCACAAGGGACAAGGA
s panTro5.chr6                 29987789 124 + 175400573 CACGGAGGCAACACTACTGCAGCAGAGCAAACCTTATTGTATCAGTGCACCAACCCCAAGTTCATGTTCATTACAGCAGGAAAAACTAACATGTGGTGAATTCTGCCTCCACAAGGGACAAGGA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30221530 124 + 173848474 CACGGAGGCAACACTACTGCAGCAGAGCAAACCTTATTGTATCAGTGCACCAACCCCAAGTTCATGTTCATTACAGCAGGAAAAACTAACATGTGGTGAATTCTGCCTCCACAAGGGACAAGGA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6022460 124 +   6154872 CATGGAGGCAACACTACTGCAGCAGAGCAAACCTTATTGTATCAGTGCACCAACCCCAAGTTCATGTTCATTATAGCAGGAAAAACTAACATGTGGTGAATTCTGCCTCCACAAGGGACAAGGA
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30222956 124 + 172585720 cacggaggcaacactactgcagcagagcaaaccttattgtatcagtgcatcaaccccaagttcacgttcattacagtaggaaaaactaacacgcggtgaattctgcctccacaaggaACAAAGA
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002711v1         696057 124 +    766320 cacggaggcaacactactgcagcagagcaaaccttattgtatcagtgcgtcaaccccaagttcacgttcattacagtaggaaaaattaacacgcggtgaattctgcctccacaaggaACAAAGA
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29140366 124 -  71996105 CACGGAGGCAACACTACTGCAGCAGAGCAAACCTTATTGTGTCAGTGCATCAACCCCAAGTTCACGCTCATTACAGTAGGAAAAACTAACACGCGGTGAATTCTGCCTCCACAAGGCACAAAGA
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2896787 124 -   3067355 CATGGAGGCAACACTACTGCAGCAGAGCAAACCTTATTGTATCAGTGCATCAACCCCAAGTTCACGTTCATTACAGTAGGAAAAACTAACACACAGTGAATTCTGCCTCCACAAGGCACAAAGA
i colAng1.NW_012115566v1       N 0 C 0
e saiBol1.JH378364                54315 2911 +    187130 I
e otoGar3.GL873550             16798716 4104 -  18854210 I
e aotNan1.NW_018509740v1         411676 5568 -    457564 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=181155.000000
s hg38.chr6_GL000254v2_alt      1025367 70 +   4827813 CC-TGATAAGACTACAATGACCAGGATGGCCG-ATATCCCTGTCTTCTTGCAACTCAAACTTTGCCTGGTTA
s panTro5.chr6                 29987913 70 + 175400573 CC-TGATAAGACTACAATGACCAGGATGGCCG-ATATCCCTGTCTTCTTGCAACTCAAACTTTGCCTGGTTA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30221654 70 + 173848474 CC-TGATAAGACTACAATGACCAGGATGGCCG-ATATCCCTGTCTTCTTGCAACTCAAACTTTGCCTGGTTA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6022584 70 +   6154872 CC-TGATAAGACTACAATGACCAGGATGGCCG-ATATCCCTGTCTTCTTGCAACTCAAGCTTTGCCTGGTTA
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30223080 72 + 172585720 CCTTGATCAGGCAACAATGACCAGGATGGCCTCATATCCATGTCTTCTTGCAACTCAAGCTTTGCCTGGTCA
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002711v1         696181 72 +    766320 CCTTGATCAGGCAACAATGACCAGGATGGCCTCATATCCATGTCTTCTTGCAACTCAAGCTTTGCCTGGTCA
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29140490 72 -  71996105 CCTTGATCAGGCAACAGTGACCAGGATGGCCTCATATCCATGTCTTCTTGCAACTCAAGCTTTGCCTGGTCA
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2896911 72 -   3067355 CCTTGATCAGGCAACAATGACCAGGATGGCCTCATATCCATATCTTCTTGCAACTCAAGCTTTGCCTGGTCA
i colAng1.NW_012115566v1       C 0 N 0
s saiBol1.JH378364                57226 71 +    187130 -CTTGATCAGGCAACAATGATGAGGGTGGCACCATATCCATGTCCCCTAGCAATTGAAGCTTTATCTGGACA
i saiBol1.JH378364             I 2911 C 0
e otoGar3.GL873550             16798716 4104 -  18854210 I
e aotNan1.NW_018509740v1         411676 5568 -    457564 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=331796.000000
s hg38.chr6_GL000254v2_alt      1025437 117 +   4827813 CCACCTACTTGCCCCAACTCCTTGGACTCCAGCCCTCCGAG-GACAGCCAGACATCTGAAGGAAGTGCCAGGCACAGATGCCAGGTTGCATAAGTGCTGGCCCCTGAGCAAC-TGGAGA
s panTro5.chr6                 29987983 117 + 175400573 CCACCTACTTGCCCCAACTCCTTGGACTCCAGCCCTCCGAG-GACAGCCAGACATCTGAAGGAAGTGCCAGGCACAGATGCCAGGTTGCATAAGTGCTGGCCCCTGAGCAAC-TGGAGA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30221724 117 + 173848474 CCACCTACTTGCCCCAACTCCTTGGACTCCAGCCCTCCGAG-GACAGCCAGACATCTGAAGGAAGTGCCAGGCACAGATGCCAGGTTGCATAAGTGCTGGCCCCTGAGCAAC-TGGAGA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6022654 117 +   6154872 CCACCTACTTGCCCCAACTCCTTGGACTCCAGCCCTCTGAG-GACAGCCAGACATCTGAAGGAAGTGCCAGGCACAGATGCCAGGTTGCATAATTGCTGGCCCCTGAGCAAC-TGGAGA
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30223152 117 + 172585720 CCACCTCCTTGCCCCGACTCCTTGAACTTCAGCCCTCCAAG-GACAGCCAGACATATGAAGGAAGTGCCAGGCACAGATGGCAGGCTGCATAATTGCTGGCCCCTGAGCACC-TGGAGA
i rheMac8.chr4                 C 0 I 4758
s cerAty1.NW_012002711v1         696253 117 +    766320 CCACCTCCTTGCCCCGACTCCTTGAACTTCAGCCCTCCAAG-GACAGCCAGACATATGAAGGAAGTGCCAGGCACAGATGGCAGGCTGCATAATTGCTGGCCCCTGAGCACC-TGGAGA
i cerAty1.NW_012002711v1       C 0 I 25331
s chlSab2.chr17                29140562 117 -  71996105 CCACCTCCTTGCCCCGATTCCTTGAACTCCAGCCCTCCAAG-GACAGCCAGACATATGAAGGAAGTGCCAGGCACAGATGATGGGCTGCATAATTGCTGGCCCCTGAGCGCC-TGGAGA
i chlSab2.chr17                C 0 I 2477
s colAng1.NW_012115566v1        2791812 116 -   3067355 CCACCTCCTTGCCCCG-CTCCTAGGATTCCAGTCCTCCAAG-GACAGCCAGACATCTGAAGGAAGTGCCAGGCACAGATGTCAGGCTGCATAATTGCTGGCCCCTGAGCACC-TGGAGA
i colAng1.NW_012115566v1       N 0 C 0
s saiBol1.JH378364                57297 119 +    187130 CCACCTCCTTGCCCCCAGTTTTCAGACCCAAGCCCTCCAAGCCACAGCCAGATATACAAGGGAAGTGCCAGGCACAGATGTCAGGCTGTGTCATTGCTGGCCCCTGAGCCACATGGAGA
i saiBol1.JH378364             C 0 C 0
e otoGar3.GL873550             16798716 4104 -  18854210 I
e aotNan1.NW_018509740v1         411676 5568 -    457564 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=4108.000000
s hg38.chr6_GL000254v2_alt      1025554 4 +   4827813 AGCT
s panTro5.chr6                 29988100 4 + 175400573 AGCT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30221841 4 + 173848474 AGCT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6022771 4 +   6154872 AGCT
i gorGor5.CYUI01015250v1       C 0 C 0
s colAng1.NW_012115566v1        2791928 4 -   3067355 GGCT
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364                57416 4 +    187130 GACT
i saiBol1.JH378364             C 0 I 313
e otoGar3.GL873550             16798716 4104 -  18854210 I
e aotNan1.NW_018509740v1         411676 5568 -    457564 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e chlSab2.chr17                29140679 2477 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=15072.000000
s hg38.chr6_GL000254v2_alt      1025558 17 +   4827813 GTTAGGTCCCAGCTGGC
s panTro5.chr6                 29988104 17 + 175400573 GTTAGGTCCCAGCTGGC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30221845 17 + 173848474 GTTAGGTCCCAGCTGGC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6022775 17 +   6154872 GTTAGGTCCCAGCTGGC
i gorGor5.CYUI01015250v1       C 0 C 0
s colAng1.NW_012115566v1        2791932 17 -   3067355 CTCAGGTCCCAGCTGGC
i colAng1.NW_012115566v1       C 0 I 63701
e saiBol1.JH378364                57420 313 +    187130 I
e otoGar3.GL873550             16798716 4104 -  18854210 I
e aotNan1.NW_018509740v1         411676 5568 -    457564 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e chlSab2.chr17                29140679 2477 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=-324.000000
s hg38.chr6_GL000254v2_alt      1025575 1 +   4827813 C
s panTro5.chr6                 29988121 1 + 175400573 A
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30221862 1 + 173848474 A
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6022792 1 +   6154872 G
i gorGor5.CYUI01015250v1       C 0 C 0
e saiBol1.JH378364                57420 313 +    187130 I
e otoGar3.GL873550             16798716 4104 -  18854210 I
e aotNan1.NW_018509740v1         411676 5568 -    457564 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2791949 63701 -   3067355 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e chlSab2.chr17                29140679 2477 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e macFas5.chr4_KE145577_random    78530 11544 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I
e nomLeu3.chr1a                74704601 1215 + 122973662 I

a score=5096.000000
s hg38.chr6_GL000254v2_alt      1025576 2 +   4827813 TA
s panTro5.chr6                 29988122 2 + 175400573 TA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30221863 2 + 173848474 TA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6022793 2 +   6154872 TA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74705816 2 + 122973662 TA
i nomLeu3.chr1a                I 1215 C 0
s macFas5.chr4_KE145577_random    90074 2 +    231697 TA
i macFas5.chr4_KE145577_random I 11544 C 0
s chlSab2.chr17                29143156 2 -  71996105 TA
i chlSab2.chr17                I 2477 C 0
s aotNan1.NW_018509740v1         417244 2 -    457564 TA
i aotNan1.NW_018509740v1       I 5568 C 0
e saiBol1.JH378364                57420 313 +    187130 I
e otoGar3.GL873550             16798716 4104 -  18854210 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2791949 63701 -   3067355 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=17868.000000
s hg38.chr6_GL000254v2_alt      1025578 6 +   4827813 GAGATC
s panTro5.chr6                 29988124 6 + 175400573 GAGATC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30221865 6 + 173848474 GAGATC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6022795 6 +   6154872 GAGATC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74705818 6 + 122973662 GAGATC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90076 6 +    231697 GAGTTC
i macFas5.chr4_KE145577_random C 0 C 0
s chlSab2.chr17                29143158 6 -  71996105 GAGATT
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2855650 6 -   3067355 GAGATC
i colAng1.NW_012115566v1       I 63701 C 0
s aotNan1.NW_018509740v1         417246 6 -    457564 GAGATC
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57420 313 +    187130 I
e otoGar3.GL873550             16798716 4104 -  18854210 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          42237 15504 -    735854 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macNem1.NW_012013156v1          69567 13130 +    243043 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=77357.000000
s hg38.chr6_GL000254v2_alt      1025584 19 +   4827813 CCTGGCTCAGGGAGTATAA
s panTro5.chr6                 29988130 19 + 175400573 CCTGGCTCAGGGAGTATAA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30221871 19 + 173848474 CCTGGCTCAGGGAGTATAA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6022801 19 +   6154872 CCTGGCTCAGGGAGTATAA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74705824 19 + 122973662 CCTGGCTCAGGGAGTATAA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90082 19 +    231697 CCTGGCTCAGGGAGTGTAA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          82697 19 +    243043 CCTGGCTCAGGGAGTATAA
i macNem1.NW_012013156v1       I 13130 C 0
s chlSab2.chr17                29143164 19 -  71996105 GCTGGATCAGGGATTATAA
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          57741 19 -    735854 CCTGGCTCAGGGAGTGTAA
i manLeu1.NW_012107142v1       I 15504 C 0
s colAng1.NW_012115566v1        2855656 19 -   3067355 CTTGGCTCAGGAGCTATAT
i colAng1.NW_012115566v1       C 0 C 0
s aotNan1.NW_018509740v1         417252 19 -    457564 CCTGGCTCAGGGGCTTTAT
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57420 313 +    187130 I
e otoGar3.GL873550             16798716 4104 -  18854210 I
e cebCap1.NW_016107755v1         331802 4910 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=398543.000000
s hg38.chr6_GL000254v2_alt      1025603 77 +   4827813 CTGGATGCCTTGAACAAAGACATGGGGTCACTGGAAAGAGAGGACCGGCTGTCCCT-CCCCACTAAGAAATAATTAAC
s panTro5.chr6                 29988149 77 + 175400573 CTGGATGCCTTGAACAAAGATATGGGGTCACTGGAAAGAGAGGACCGGCTGTCCCT-CCCCACTAAGAAATAATTAAC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30221890 77 + 173848474 CTGGATGCCTTGAACAAAGATATGGGGTCACTGGAAAGAGAGGACCGGCTGTCCCT-CCCCACTAAGAAATAATTAAC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6022820 77 +   6154872 CTGGATGCCTTGAACAAAGATATGGGGTCACTGGAAAGAGAGGACCGGCTGTCCCT-CCCCACTAAGAAATAATTAAC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74705843 77 + 122973662 CTGGATGCCTTGAACAAAGATATGGGGTCACTGGAAAGAGAGGACCGGCTGTCCCT-CCCCACTAAGAAATAATTAAC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90101 77 +    231697 CTGGATGCCTTGAATAAGGATATGGGGTCACTGGAAAGAGAGGACTGGCTGCCCCT-CCCCGCTAAGAAACAATTAAC
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          82716 77 +    243043 CTGGATTCCTTGAACAAGGATATGGGGTCACTGGAAAGAGAGGACCGGCTGTACCT-CCCCACTAAGAAATAAATAAC
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29143183 77 -  71996105 CTGGATGCCTTCAACAAGGATATGGGGTCACTGGAAAAAGATGACTGACTGTCCCT-TCCCACTAAGAAATAATTAAC
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          57760 77 -    735854 CTGAATTCCTTGAACAAGGATATGGGGTCACTGGGAAGAGAGGACCGGCTGTACCT-CCCTGCTAAGAAATAAATAAC
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2855675 78 -   3067355 TTGGATGCCTTGAACAAGGATATGGTGTCACTGGAAAGAGAGAACTGGCTGTCTCTCCCCCACTAAGAAATAATTAAC
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         336712 76 -   1771730 CTGGATGCCTTGAACAAGGAT-GGGGGTCCCTGGAAAGAGAGGACCAGCTGTCCCT-CACCAGTAAGAAATAATTAAG
i cebCap1.NW_016107755v1       I 4910 C 0
s aotNan1.NW_018509740v1         417271 77 -    457564 CTAGATGCCTTGAACAAGAATAGGGGGTCCCTGGAAAGAGAGGACCAGCTGTCCCT-CACCAGTAAGAAATAATTAAG
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57420 313 +    187130 I
e otoGar3.GL873550             16798716 4104 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=301066.000000
s hg38.chr6_GL000254v2_alt      1025680 59 +   4827813 TGTTAGATGAGGGGGAATTCCTTTTC-AAGGGCTCTGTGGACTGTGCTGCTCTGGAGGGG
s panTro5.chr6                 29988226 58 + 175400573 TGTTAGATGAGGGGGAA-TCCTTTTC-AAGGGCTGTGTGGACTGTGCTGCTCTGGAGGGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30221967 59 + 173848474 TGTTAGATGAGGGGGAATTCCTTTTC-AAGGGCTCTGTGGACTGTGCTGCTCTGGAGGGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6022897 59 +   6154872 TGTTAGATGAGGGGGAATTCCTTTTC-AAGGGCTCTGTGGACTGTGCTGCTCTGGAGGGG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74705920 59 + 122973662 TTTTAGATGAGGGGCAATTCCTGTTC-AAGGGCTCTGTGGACTGTACTGCTCTGGAGGGG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90178 59 +    231697 TGTTAGATGAGGGGGAATTCCTGTTC-AAGGACTCTGTGCACTGTGCTGCTCTGGAGGGG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          82793 59 +    243043 TGTTAGATGAGGGGGAATTGCTATTC-AGTGACTCTGTGCACTGTGCTGCTCTGGAGGGG
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29143260 60 -  71996105 TGTTCGATAAGGGGTTATTCCTGTTCAAGGAAATCTctggactgtgctgctctgaagggg
i chlSab2.chr17                C 0 I 57
s manLeu1.NW_012107142v1          57837 59 -    735854 TGTTAGGTGAGGGGGAATTCCTGTTC-AGTGACTCTGTGGTCTGTGCTGCTCTGGAGGGG
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2855753 59 -   3067355 TGTTAGATGAGGGGGAATTCCTCTTC-AAGGACTCTGTCGACTGTCCTGCCTTAGAGAGC
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         336788 58 -   1771730 TGTTAGATG-GGGAGAATTCCTGTTC-AAGGACTTTGTGGACTGTGCTGCTGTGGAGAGG
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         417348 58 -    457564 TGTTAGATG-GGGAGAACTCCTGTTC-AAGGACTTTGTGGACTGTGCTGCTGTGGAGAGG
i aotNan1.NW_018509740v1       C 0 C 0
s otoGar3.GL873550             16802820 57 -  18854210 TATCAGATGCAGCG--ATTCCCGTTC-AAGGATTCTGTGGACTGTGCTGCTGAGGGGAAG
i otoGar3.GL873550             I 4104 C 0
e saiBol1.JH378364                57420 313 +    187130 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=4125.000000
s hg38.chr6_GL000254v2_alt      1025739 1 +   4827813 G
s panTro5.chr6                 29988284 1 + 175400573 G
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222026 1 + 173848474 G
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6022956 1 +   6154872 G
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74705979 1 + 122973662 G
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90237 1 +    231697 G
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          82852 1 +    243043 G
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          57896 1 -    735854 G
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2855812 1 -   3067355 C
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         336846 1 -   1771730 G
i cebCap1.NW_016107755v1       C 0 I 43
s aotNan1.NW_018509740v1         417406 1 -    457564 G
i aotNan1.NW_018509740v1       C 0 I 3
s otoGar3.GL873550             16802877 1 -  18854210 G
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57420 313 +    187130 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29143320 57 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=142785.000000
s hg38.chr6_GL000254v2_alt      1025740 47 +   4827813 -TAGGGAGAGGGAGGAGCCCTGAGGTCTGGGCTGGGGTGTGGTTGGGA-
s panTro5.chr6                 29988285 44 + 175400573 -TGGGGAGAG---GGAGCCCTGAGGTCTGGGCTGGGGTGTGGTTGGGA-
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222027 44 + 173848474 -TGGGGAGAG---GGAGCCCTGAGGTCTGGGCTGGGGTGTGGTTGGGA-
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6022957 44 +   6154872 -TGGGGAGAG---GGAGCCCTGAGGTCTGGGCTGGGGTGTGGTTGGGA-
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74705980 44 + 122973662 -TGGGGAGAG---GGAGCCCTGAGATCTGGACTGGGGTGTGGTTGGGA-
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90238 44 +    231697 -TAGGGAGCG---GGAGCCCTGAGGTCTGGGCTTGGGTATGGTTGGGA-
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          82853 44 +    243043 -TGGGGAGAG---GGAGCCCTGAGGTCTAGGATGAGGTGTGGTTGGGA-
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          57897 44 -    735854 -CAGGGAGAG---GGAGCCGTGAGGTCTGGGCTGAGGTGGGGGTGGGA-
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2855813 44 -   3067355 -TGGGGAGAG---GGAGTCCTGAGGTCTGGGCTGCAGTGGGGGTAGGA-
i colAng1.NW_012115566v1       C 0 C 0
s aotNan1.NW_018509740v1         417410 40 -    457564 -AGGGGAGAC---AAAGCCCTGATGTCTgagctggggtggaggc-----
i aotNan1.NW_018509740v1       I 3 C 0
s otoGar3.GL873550             16802878 44 -  18854210 TAGAGTAAGG---GGAGCTCTGAAGTCTGTACTAGGGTTAGG--GGTAT
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57420 313 +    187130 I
e cebCap1.NW_016107755v1         336847 43 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29143320 57 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=137568.000000
s hg38.chr6_GL000254v2_alt      1025787 36 +   4827813 AGGAGCTGAGAGCTGAGAGCTGTAACTACACAAGGA
s panTro5.chr6                 29988329 36 + 175400573 AGgagctgagagctgagagctggaactaggcaagga
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222071 36 + 173848474 AGGAGCTGAGAGCTGAGAGCTGGAACTACGCAAGGA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023001 36 +   6154872 AGgagctgagagctgagagctggaactaggcaagga
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706024 29 + 122973662 AG-------GAGCTGAGAGCTGTAACTAGGCAAGGA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90282 36 +    231697 AGGAGCTGAGAGCTGAGAGCTGTAACTAGGCCAGGA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          82897 36 +    243043 AGGAGCTGAGAGCTGAGAGCTGTAAATAGGCAAGGA
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          57941 36 -    735854 AGgagctgagagctgagagctataactaggcaagga
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2855857 29 -   3067355 AGGAGTTGAGAGCTGG-------AAATAGGTAAAAA
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         336890 35 -   1771730 aggagctg-gagctgagagctggagACAGACAAGGG
i cebCap1.NW_016107755v1       I 43 C 0
s aotNan1.NW_018509740v1         417450 35 -    457564 aggagctg-gagctgagagctggagatagacaagga
i aotNan1.NW_018509740v1       C 0 C 0
s otoGar3.GL873550             16802922 36 -  18854210 AGGCACTGGGAGCTGAGATTTGGGACTAAGCCTAGA
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57420 313 +    187130 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29143320 57 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=224750.000000
s hg38.chr6_GL000254v2_alt      1025823 39 +   4827813 GCTGCAGGGGTGAGGTTGGTGCAGGGTGGGATTTAGAGG
s panTro5.chr6                 29988365 39 + 175400573 gctgcaggggtgagGTTGGTGCCAGGTGGGATTTAGAGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222107 39 + 173848474 GCTGCAGGGGTGAGGTTGGTGCAGGGTGGGATTTAGAGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023037 39 +   6154872 gctgcaggggtgagGTTGGTGCAGGGTGGGATTTAGAGG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706053 39 + 122973662 GCTGCAGGGGTGAGGTTAGTGCAGGGTGGGATTTAGAGG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90318 39 +    231697 GCTGCAGGGGTGAGGTTGGTGCAGGGTGGGATTTAGAGG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          82933 38 +    243043 GCTGCAGGGGTAAGGTTGGTGCAGGGTGGGATTTAGA-G
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29143377 39 -  71996105 GCTGCAGGGATGAGGGTGGTGAAGGGTGGGATTGAGAGG
i chlSab2.chr17                I 57 C 0
s manLeu1.NW_012107142v1          57977 39 -    735854 gctgcaggggtgagGTTGGTGCAGGGTGGGATTTAGAGG
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2855886 39 -   3067355 GCTGCAGGAGTGAAGGTGATGAAGGGTGAAATTTAGAGG
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         336925 39 -   1771730 GCTTCAGGGGTGGGGGTGGTGCAGGGTGGGATTTGGAGG
i cebCap1.NW_016107755v1       C 0 I 70
s aotNan1.NW_018509740v1         417485 39 -    457564 gctTCAGGGGTGGGGGTGGTGTGGGGTGGGATTCAGAGG
i aotNan1.NW_018509740v1       C 0 I 67
s otoGar3.GL873550             16802958 38 -  18854210 GCTGTGGGGG-GATGGTGGTATAGGGTGGGATTGAGGGG
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57420 313 +    187130 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=17681.000000
s hg38.chr6_GL000254v2_alt      1025862  8 +   4827813 A--TTTCCCC
s panTro5.chr6                 29988404  8 + 175400573 A--TTTCCCC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222146  8 + 173848474 A--TTTCTCC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023076  8 +   6154872 A--TTTCCCC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706092  8 + 122973662 C--TTTCCCC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90357  8 +    231697 A--TTCCCCA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          82971  8 +    243043 A--TACTCCC
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29143416  8 -  71996105 C--TTCCCCC
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          58016  8 -    735854 A--TACTCCC
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2855925 10 -   3067355 ATTTTTTCCC
i colAng1.NW_012115566v1       C 0 C 0
s otoGar3.GL873550             16802996  8 -  18854210 A--TCCCTCC
i otoGar3.GL873550             C 0 I 12310
e saiBol1.JH378364                57420 313 +    187130 I
e aotNan1.NW_018509740v1         417524 67 -    457564 I
e cebCap1.NW_016107755v1         336964 70 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=117173.000000
s hg38.chr6_GL000254v2_alt      1025870 35 +   4827813 CAGACTCCTGTGCTGATCCCCTTCATCTCCTCCAC
s panTro5.chr6                 29988412 35 + 175400573 CAGACTCCTGTGCTGATCCCCTTCATCTCCTCCAC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222154 35 + 173848474 CAGACTCCTGTGCTGATCCCCTTCATCTCCTCCAC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023084 34 +   6154872 C-GACTCCTGTGCTGATCCCCTTCATCTCCTCCAC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706100 35 + 122973662 CAGACTCCTGTGCTGATCCCCTTCATCTCCTCCAC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90365 35 +    231697 CCTGCTCCTGTGCTCATGCCCTTCACATCCTCCAC
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          82979 35 +    243043 CCGACTCCTGTGCTGATCCCCTTCACATCCTCCAC
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29143424 33 -  71996105 C--ACTCCTGTGCTGATTCCCTTCACCTCCTCCAC
i chlSab2.chr17                C 0 I 29
s manLeu1.NW_012107142v1          58024 35 -    735854 CTGACTCCTGTGCTGATCCCCTTCACATCCTCCAC
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2855935 35 -   3067355 CCAGCTTCTGTACTGATCCCCTTCATCTCTTCCAC
i colAng1.NW_012115566v1       C 0 C 0
e saiBol1.JH378364                57420 313 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         417524 67 -    457564 I
e cebCap1.NW_016107755v1         336964 70 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=70527.000000
s hg38.chr6_GL000254v2_alt      1025905 28 +   4827813 CCCCACCCTTGGTGTCTGTCAACATGCG
s panTro5.chr6                 29988447 28 + 175400573 CCCCACCCTTGGTGTCCGTCAACATGCG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222189 28 + 173848474 CCCCACCCTTGGTGTCCGTCAACATGCG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023118 28 +   6154872 CCCCACCCTTGGTGTCCGTCAACATGCA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706135 28 + 122973662 CCCCACCCTTGGTGTCCGTCAACATGCG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90400 28 +    231697 CCCCACCCTTGGTGTCCGTCAACATGTG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          83014 28 +    243043 CCCCACCCTTGGTGTCCATCAACGTGTG
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          58059 28 -    735854 CCCCACCTTTGGTGTCCATCAACATGTA
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2855970 22 -   3067355 TCCCGCCCATGG-----ATCCACATG-G
i colAng1.NW_012115566v1       C 0 C 0
e saiBol1.JH378364                57420 313 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         417524 67 -    457564 I
e cebCap1.NW_016107755v1         336964 70 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29143457 29 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=2395.000000
s hg38.chr6_GL000254v2_alt      1025933 1 +   4827813 G
s panTro5.chr6                 29988475 1 + 175400573 G
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222217 1 + 173848474 G
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023146 1 +   6154872 G
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706163 1 + 122973662 G
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90428 1 +    231697 G
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          83042 1 +    243043 A
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          58087 1 -    735854 G
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2855992 1 -   3067355 A
i colAng1.NW_012115566v1       C 0 C 0
s aotNan1.NW_018509740v1         417591 1 -    457564 G
i aotNan1.NW_018509740v1       I 67 C 0
e saiBol1.JH378364                57420 313 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         336964 70 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29143457 29 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=22390.000000
s hg38.chr6_GL000254v2_alt      1025934 6 +   4827813 GGGTGC
s panTro5.chr6                 29988476 6 + 175400573 GGGTGC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222218 6 + 173848474 GGGTGC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023147 6 +   6154872 GGGTGC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706164 6 + 122973662 GGGTGC
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90429 6 +    231697 GGGTAA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          83043 6 +    243043 GGGTGA
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          58088 6 -    735854 GGGTGA
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2855993 6 -   3067355 CGGTGA
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         337034 6 -   1771730 GGGTGA
i cebCap1.NW_016107755v1       I 70 C 0
s aotNan1.NW_018509740v1         417592 6 -    457564 GGGTGA
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57420 313 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29143457 29 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=272559.000000
s hg38.chr6_GL000254v2_alt      1025940 52 +   4827813 CCTCATCTTCCCACTGCCCCTGGAGCTGTTCTACTCTTCCACGCTTGCCTTG
s panTro5.chr6                 29988482 52 + 175400573 CCTCATCTTCCCACTGCCCCTGGAGCTGTTCTACTCTTCCATGCTTGCCTTG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222224 52 + 173848474 CCTCATCTTCCCACTGCCCCTGGAGCTGTTCTACTCTTCCATGCTTGCCTTG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023153 52 +   6154872 CCTCATCTTCCCACTGCCCCTGGAGCTGTTCTACTCTTCCATGCTTCCCTTG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706170 52 + 122973662 CCTCATCTTCCCACTGCCCCTGGAGCTGTTCTGCTCTTCCATGCTTGCATTG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90435 52 +    231697 CTTCATCTTCCCACTGCCCCTGGAGCTGTTCTACTCTTCTATGTTTGCCTTG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          83049 52 +    243043 CCTCATCTTCCCACTGCCCTTGGAGCTGTTCTGCTCTTCCATGCTTGCCTTG
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29143486 51 -  71996105 CCTTATCTTCCCACTGCCCCTGAAGCTGTT-TGCTCTTCCATGCTTGCCTTT
i chlSab2.chr17                I 29 C 0
s manLeu1.NW_012107142v1          58094 52 -    735854 CCTCATCTTCCCCCTGCCCTCGGAGCTGTTCTGCTCTTCCATGCTTGCCTTG
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2855999 52 -   3067355 CCTCATCTTCCCACTGCCCCTGAAGCTGTTCTGCTCTTTCTTGCAGGCCTTG
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         337040 52 -   1771730 CCTCAGCTTCTCACTGTTCCTGGAGCTATTCTGCTCTTCTATGCTTGCCTTG
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         417598 52 -    457564 CCTCAGCTTCTCACTTCCCCTGGAGCTGTTCTGCTCTTCTATGCTTGCCTTG
i aotNan1.NW_018509740v1       C 0 I 101
e saiBol1.JH378364                57420 313 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=191356.000000
s hg38.chr6_GL000254v2_alt      1025992 48 +   4827813 GGGTTTTCAGAGCAGCATCTTTGTGAGTCCTGGAGTGCTAGGGACCAG
s panTro5.chr6                 29988534 48 + 175400573 GGGTTTTCAGAGCAGCATCTTTGTGAGTCCTGGAGTGCTAGGGACCAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222276 48 + 173848474 GGGTTTTCAGAGCAGCATCTTTGTGAGTCCTGGAGTGCTAGGGACCAG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023205 48 +   6154872 GGGTTTTCAGAGCAGCATCTTTGTGAGTCCTGGAGTGCTAGGGACCAG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706222 48 + 122973662 GGGTCTTCAGAGTAGCATCTTTGTGAGTCCTGGAGTGCTAGGGACCAG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90487 48 +    231697 GGGTTTTCAGAGCAGCATATTTGTGAGTCCTAGAGTGCTAGGGACGAG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          83101 48 +    243043 GAGTTTTCAGAGCAGCATCTTTGTGAGTCCTGGAGTGCTAGGGACCAG
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29143537 48 -  71996105 GGGCTCTGGGAGTAGCATGTTTAGGAGCCGTGGGGTTCCAGGGACCAG
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          58146 48 -    735854 GGGTTTTCAGAGCAGCAACTTTGTGAGTCCTGGAGCGCTAGGGACCAG
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2856051 48 -   3067355 GCATTTTGGGAACAGTATGTTCATGAGCCCTGGGGTGCCAGGGACCAG
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         337092 48 -   1771730 AGGTTTTTGGAGTAACATCATCAAGAGCCCTGGGGTGCCAGGGACCAG
i cebCap1.NW_016107755v1       C 0 I 54
e saiBol1.JH378364                57420 313 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         417650 101 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=20916.000000
s hg38.chr6_GL000254v2_alt      1026040 5 +   4827813 GAGGG
s panTro5.chr6                 29988582 5 + 175400573 GAGGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222324 5 + 173848474 GAGGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023253 5 +   6154872 GAGGG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706270 5 + 122973662 GAGGG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90535 5 +    231697 AAGGG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          83149 5 +    243043 GAGGG
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29143585 5 -  71996105 GAGGG
i chlSab2.chr17                C 0 I 212
s manLeu1.NW_012107142v1          58194 5 -    735854 GAGGG
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2856099 5 -   3067355 GAGGG
i colAng1.NW_012115566v1       C 0 I 52
e saiBol1.JH378364                57420 313 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         417650 101 -    457564 I
e cebCap1.NW_016107755v1         337140 54 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=14261.000000
s hg38.chr6_GL000254v2_alt      1026045 9 +   4827813 GAGAGGAGG
s panTro5.chr6                 29988587 9 + 175400573 GAGAGGAGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222329 9 + 173848474 GAGAGGAGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023258 9 +   6154872 GATAGGAGG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706275 7 + 122973662 --TAGGAGG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90540 7 +    231697 --CAGAAGG
i macFas5.chr4_KE145577_random C 0 I 26
s macNem1.NW_012013156v1          83154 7 +    243043 --CAGGAGG
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          58199 7 -    735854 --CAGGAGG
i manLeu1.NW_012107142v1       C 0 C 0
e saiBol1.JH378364                57420 313 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         417650 101 -    457564 I
e cebCap1.NW_016107755v1         337140 54 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2856104 52 -   3067355 I
e chlSab2.chr17                29143590 212 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=73725.000000
s hg38.chr6_GL000254v2_alt      1026054 103 +   4827813 CAATAGCCTCCTTTAATTTGGCAACAGCTTTTCGTTATCATCTCCACTTTCCAAGGCAGGAAAAGTGAAGGCAACAGCTCTGAGAGATCCTGGAAGAGGAAAA
s panTro5.chr6                 29988596 103 + 175400573 CAATAGCCTCCTTTAATTTGGCAACAGCTTTTCGTTATCATCCCCACTTTCCAAGGCAGGAAAAGTGAAGGCAACAGCTCCGAGAGATCCTTGAAGAGGAAAA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222338 103 + 173848474 CAATAGCCTCCTTTAatttggcaacagcttttcgttatcatccccactttccaaggcAGGAAAAGTGAAGGCAACAGCTCCGAGAGATCCTTGAAGAGGAAAA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023267 103 +   6154872 CAATAGCCTCCTTTAATTTGGCAACAGCTTTTCGTCATCATCCCCACTTTCCGAGGCAGGAAAAGTGAAGGCAACAGCTCCGAGAGATCCTGGAAGAGGAAAA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706282  41 + 122973662 --------------------------------------------------------------AGGTGAACACAATAGCACCGAGAGAGCCTTGAAGAGGGAAA
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          83161  41 +    243043 --------------------------------------------------------------AGGTGAAGACAATAGCACTAAGAGAGCCTTGAAGAGGGAAA
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          58206  41 -    735854 --------------------------------------------------------------AGGTGAAGACAATAGCAGTAACAGAGCCTTGAAGAGGGAAA
i manLeu1.NW_012107142v1       C 0 C 0
e saiBol1.JH378364                57420 313 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         417650 101 -    457564 I
e cebCap1.NW_016107755v1         337140  54 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2856104  52 -   3067355 I
e chlSab2.chr17                29143590 212 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547  26 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=13752.000000
s hg38.chr6_GL000254v2_alt      1026157 4 +   4827813 ACCA
s panTro5.chr6                 29988699 4 + 175400573 ACCA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222441 4 + 173848474 ACCA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023370 4 +   6154872 ACCA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706323 4 + 122973662 ACCA
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          83202 4 +    243043 ACCA
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          58247 4 -    735854 ACCA
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         337194 4 -   1771730 ACCA
i cebCap1.NW_016107755v1       I 54 C 0
s aotNan1.NW_018509740v1         417751 4 -    457564 ACCA
i aotNan1.NW_018509740v1       I 101 C 0
e saiBol1.JH378364                57420 313 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2856104 52 -   3067355 I
e chlSab2.chr17                29143590 212 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547 26 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=14230.000000
s hg38.chr6_GL000254v2_alt      1026161 4 +   4827813 TGGC
s panTro5.chr6                 29988703 4 + 175400573 TGGC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222445 4 + 173848474 TGGC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023374 4 +   6154872 TGGC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706327 4 + 122973662 TGGT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          83206 4 +    243043 TGGT
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          58251 4 -    735854 TGGT
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2856156 4 -   3067355 TGGC
i colAng1.NW_012115566v1       I 52 C 0
s cebCap1.NW_016107755v1         337198 4 -   1771730 TGGT
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         417755 4 -    457564 TGGT
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57420 313 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29143590 212 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547 26 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=89267.000000
s hg38.chr6_GL000254v2_alt      1026165 21 +   4827813 GGGTGAGGCAGGGAGCTGTCT
s panTro5.chr6                 29988707 21 + 175400573 AGGTGAGGCAGGGAGCTGTCT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222449 21 + 173848474 GGGTGAGGCAGGGAGCTGTCT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023378 21 +   6154872 GGGTGAGGCAGGGAGCTGTCT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706331 21 + 122973662 GGGTGAGGCGGGGAGCAGTCT
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          83210 21 +    243043 ATGTGAGGCAGGGAGCAGTCT
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          58255 21 -    735854 GTGTGAGGCAGGGAGCAGTCT
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2856160 21 -   3067355 AGGTGAGGCAAGGAGCTGTCT
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364                57733 20 +    187130 GGGTGAGGCA-GGGGCTGTCT
i saiBol1.JH378364             I 313 C 0
s cebCap1.NW_016107755v1         337202 21 -   1771730 GGGTGAGGCAGGGGGCTGTCT
i cebCap1.NW_016107755v1       C 0 I 106
s aotNan1.NW_018509740v1         417759 21 -    457564 GGGTGAGGCAGGGGGCTGTCT
i aotNan1.NW_018509740v1       C 0 C 0
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29143590 212 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547 26 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=13095.000000
s hg38.chr6_GL000254v2_alt      1026186 3 +   4827813 GAG
s panTro5.chr6                 29988728 3 + 175400573 GAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222470 3 + 173848474 GAG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023399 3 +   6154872 GAG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706352 3 + 122973662 GAG
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          83231 3 +    243043 GAG
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          58276 3 -    735854 GAG
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2856181 3 -   3067355 GAG
i colAng1.NW_012115566v1       C 0 I 87
s saiBol1.JH378364                57753 3 +    187130 GAG
i saiBol1.JH378364             C 0 C 0
s aotNan1.NW_018509740v1         417780 3 -    457564 GAG
i aotNan1.NW_018509740v1       C 0 C 0
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         337223 106 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29143590 212 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547 26 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=49311.000000
s hg38.chr6_GL000254v2_alt      1026189 22 +   4827813 TTTCCTAGCAGACATCAGGAGC
s panTro5.chr6                 29988731 22 + 175400573 TTTCCCAGCAGACATCAGGAGC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222473 22 + 173848474 TTTCCCAGCAGACACCAGGAGC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023402 22 +   6154872 TTTCCCAGCAGACATCAGGAGC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706355 22 + 122973662 TTGCCCAGAAGACACCAGGAGC
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          83234 22 +    243043 TTTCCCAGAAGACAGTCAGAGA
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          58279 22 -    735854 TTGCCCAGAAGACAGTCGGAGA
i manLeu1.NW_012107142v1       C 0 C 0
s saiBol1.JH378364                57756 22 +    187130 CTGCCCAGCAGCCACCAGGAGC
i saiBol1.JH378364             C 0 C 0
s aotNan1.NW_018509740v1         417783 22 -    457564 CTGCCCAGCAGCCACCAGGAGC
i aotNan1.NW_018509740v1       C 0 I 43
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         337223 106 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2856184 87 -   3067355 I
e chlSab2.chr17                29143590 212 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547 26 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=95336.000000
s hg38.chr6_GL000254v2_alt      1026211 51 +   4827813 CCGCCCT-TCCAGGCCTGGGCTTTGCTTCAGTGcctggccctgcataggccc
s panTro5.chr6                 29988753 51 + 175400573 CCGCCCT-TCCAGGCCTGGACTTTGCTTCATTGcctggccctgcataggccc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222495 51 + 173848474 CCGCCCT-TCCAGGCCTGGACTTTGCTTCATTGcctggccctgcataggccc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023424 51 +   6154872 CCGCCCT-TCCAGGCCTGGACTTTGCTTCATTGcctggccctgcgtaggccc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706377 52 + 122973662 CGGCTCTCTCCAGGCCTTGGCTTTGCTTCAGTGCCTGGCACTGCAGAGGCCC
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          83256 52 +    243043 CCGCTCTCTCCAGGCCTTGGCTTTACTTCAGTGCCTGGCCCTGCATAGGCCC
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          58301 52 -    735854 CCGCTCTCTCCAGGCCTTGGCTTTACTTCAGTGCCTGGCCCTGCACAGGCCC
i manLeu1.NW_012107142v1       C 0 C 0
s saiBol1.JH378364                57778 44 +    187130 --------TCTAGGCCTTGATCTTACTTGAGTGCCAGACCCTGTCACAGCCA
i saiBol1.JH378364             C 0 C 0
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         417805 43 -    457564 I
e cebCap1.NW_016107755v1         337223 106 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2856184 87 -   3067355 I
e chlSab2.chr17                29143590 212 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547 26 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=17567.000000
s hg38.chr6_GL000254v2_alt      1026262 12 +   4827813 ctgcccctgtcc
s panTro5.chr6                 29988804 12 + 175400573 ctgcccctgtcc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222546 12 + 173848474 ctgcccctgtcc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023475 12 +   6154872 ctgcccctgtcc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706429 11 + 122973662 CAG-CCCTGCTC
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          83308 11 +    243043 C-ACGCCTGCCC
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          58353 11 -    735854 C-ACGCCTGCCC
i manLeu1.NW_012107142v1       C 0 C 0
s saiBol1.JH378364                57822 12 +    187130 CTGCCCCCATCC
i saiBol1.JH378364             C 0 I 7960
s aotNan1.NW_018509740v1         417848 12 -    457564 CTGCCCCCATCC
i aotNan1.NW_018509740v1       I 43 C 0
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         337223 106 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2856184 87 -   3067355 I
e chlSab2.chr17                29143590 212 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547 26 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=41044.000000
s hg38.chr6_GL000254v2_alt      1026274 21 +   4827813 cgttctgctgccccCACCTCC-
s panTro5.chr6                 29988816 21 + 175400573 cgttctgctgccccCACCTCC-
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222558 21 + 173848474 cgttctgctgccccCACCTCC-
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023487 21 +   6154872 cgttctgctgccccCACCTCC-
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706440 21 + 122973662 TGCTCCGCTGCCCCCACCTCC-
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          83319 21 +    243043 TGCTCTGCTGCCTCCACCTCC-
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          58364 21 -    735854 TGCTCTGCTGCCTCCTCCTCC-
i manLeu1.NW_012107142v1       C 0 C 0
s aotNan1.NW_018509740v1         417860 22 -    457564 TGTTCTGCTGCCCACAACGTCC
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         337223 106 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2856184 87 -   3067355 I
e chlSab2.chr17                29143590 212 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547 26 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=17352.000000
s hg38.chr6_GL000254v2_alt      1026295 5 +   4827813 CTCTC
s panTro5.chr6                 29988837 5 + 175400573 CTCTC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222579 5 + 173848474 CTCTC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023508 5 +   6154872 CTCTC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706461 5 + 122973662 CTCTC
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          83340 5 +    243043 CTCTC
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          58385 5 -    735854 CTCTC
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2856271 5 -   3067355 CTCTC
i colAng1.NW_012115566v1       I 87 C 0
s aotNan1.NW_018509740v1         417882 5 -    457564 CTCTC
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         337223 106 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29143590 212 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547 26 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=124825.000000
s hg38.chr6_GL000254v2_alt      1026300 40 +   4827813 AGCCTGGCCCCAGACAGAATCCAGACCAACTCCTG--TCTGC
s panTro5.chr6                 29988842 42 + 175400573 AGCCTGGCCCCAGACAGAATCCAGACCAACTTCTGTCTCTGC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222584 42 + 173848474 AGCCTGGCCCCAGACAGAATCCAGACCAACTTCTGTCTCTGC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023513 42 +   6154872 AGCCTGGCCCCAGACAGAATCCAGACCAACTCCTGTCTCTGC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706466 42 + 122973662 AGCCTGGCCCCAGACAGAATCCAGACCAACTCCTGTTTCTGA
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          83345 40 +    243043 AGCCTGGTCTCAGACACAATCCAGACCAACTCCTGTTTCT--
i macNem1.NW_012013156v1       C 0 I 2
s manLeu1.NW_012107142v1          58390 40 -    735854 AGCCTGGTCTCAGACACAATCCAGACCAACTCCTGTTTCT--
i manLeu1.NW_012107142v1       C 0 I 2
s colAng1.NW_012115566v1        2856276 40 -   3067355 AACCTGGCCCCAAACAGGATCCCAAACAACACCTGTTCCT--
i colAng1.NW_012115566v1       C 0 I 2
s cebCap1.NW_016107755v1         337329 42 -   1771730 AGCCTGGACCCAGACAGAATCCAGAACAACTCCTGTTCCTTA
i cebCap1.NW_016107755v1       I 106 C 0
s aotNan1.NW_018509740v1         417887 42 -    457564 AGCCTGGACCCAGACAGAGTCCAGAACAACTCCTATTCCTGA
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e chlSab2.chr17                29143590 212 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547 26 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=666148.000000
s hg38.chr6_GL000254v2_alt      1026340 169 +   4827813 TGTGAAAAATGTTCCTGCCAGTTTAGGCAGATCTTGCTTTAGAGCACTGGTGCCCAGCCTTCCACAGGTCTTGTGTCTGTTTTTCTTGGCACTATGTTTCTtctcatgtattcttctgaat-tggcaaggcaggaattacatcactggtttgcagatgaggaaactgact
s panTro5.chr6                 29988884 169 + 175400573 TGTGAAAAATGTTCCTGCCAGTTTAGGCAGATCTTGCTTTAGAGCACTGGTGCCCAGCCTTCCACAGGTCTTGTGTCTGTTTTTCTTGGCACTATGTTTCTtctcatgtattcttctgaat-tggcaaggcaggaattacatcactggtttgcagatgaggaaactgact
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222626 169 + 173848474 TGTGAAAAATGTTCCTGCCAGTTTAGGCAGATCTTGCTTTAGAGCACTGGTGCCCAGCCTTCCACAGGTCTTGTGTCTGTTTTTCTTGGCACTATGTTTCTTCTCATGTATTCTTCTGAAT-Tggcaaggcaggaattacatcactggtttgcagatgaggaaactgact
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023555 169 +   6154872 TGTGAAAAATGTTCCTGCCAGTTTAGGCAGATCTTGCTTTAGAGCACTGGTGCCTAGCCTTCCACAGGTCTTGTGTCTGTTTTTCTTGGCACTATGTTTCTtctcatgtattcttctgaat-tggcaaggcaggaattacatcactggtttgcagatgaggaaactgact
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706508 169 + 122973662 TGTGAAAAATGTTCCTGCCAGATTAGGCAGAGCTTGCTTTAGAGCACTGGTGCCCAACCTTCCACAGGGCTTGTGTCTGTTTTTCTTGGCAGTGtgtttcatctcacttattcttctgatt-cacctatgcaggaattacatcactggcttgcagatgaggaaattgact
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          83387 169 +    243043 TGTGAAAAATGTTCCTGTCAGTTTAGGCAGAACTTGCTTCAGAGCACTGCTACCCAGCCTTCCACAGGTCTTGCGTCTGTTTTTCTCGGTACTGTATTTGTtctcatttattcttctgaat-tggcaaggcaggaattacatcactggtttgcagatgaggaaacggact
i macNem1.NW_012013156v1       I 2 C 0
s chlSab2.chr17                29143802 161 -  71996105 TGTGAAAAATGTTTCTACCAGTTTAGGCAGAACTTGCTTTAGAGCACTGGTGCCCAGCCTTCCACAGGTC--GTGTCTGTTTTTCTTGACACTGTGTCTTTTTTCATTTATTCTTct-------gcgaggaaggaattatatcactggtttgcggatgaggaaattggct
i chlSab2.chr17                I 212 C 0
s manLeu1.NW_012107142v1          58432 169 -    735854 TGTGAAAAATGTTCCTGTCCGTTTAGGCAGAACTTGCTTCAGAGCACTGGTGCCCAGCCTTCCACAGGTCTTGTGTCTGTTTTTCTTGGCACTGTGTTTCTTCTCATGTATTCTTCTGAAT-Tggcaaggcaggaattacatcactggtttgcagatgaggaaacagact
i manLeu1.NW_012107142v1       I 2 C 0
s colAng1.NW_012115566v1        2856318 158 -   3067355 TGTGAAAATTGTTTCTGCCAGTTTAGGTAGAACTTGCTTTAGAGCACTGGTA--CAGCCTTCCACAGGCCTTGTGTCTGTTTTTCTTGGCACTGTTTCTTTTTTCATTTATTCTTCT-------GCAAGGAAGGAATTATATCACTGGTT---GGATGAGGAAATTGGCT
i colAng1.NW_012115566v1       I 2 C 0
s cebCap1.NW_016107755v1         337371 169 -   1771730 TCTGAAAAACATTCCTGCCAGTTTAGGTACAGCTTGCTTTAGAGCACTGG-GCCCGGCCTTCCGCAGGTCTTCTGTCTGCTTCTCTTGGCATTGTGTCTCTtctcacttattctcctgaatgctgcaaggaaggaattacatcactgggctgcagatgagaaaactgact
i cebCap1.NW_016107755v1       C 0 I 1102
s aotNan1.NW_018509740v1         417929 165 -    457564 TCTGAAAAACGTTTCCGCCAGTTTAGGTACAGCTTGCTTTAGAGCACTGG-GCCCGGCCTTCCGCAGGTCTTCTGT----TTCTCTTGGCATTGTGTCTCTtctcacttattctcctgaattctgcaaggaaggaattacatcactgggttgcagatgagaaaactgact
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547  26 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=73478.000000
s hg38.chr6_GL000254v2_alt      1026509 23 +   4827813 caTATGGTTTCATTCAGCATTCA
s panTro5.chr6                 29989053 23 + 175400573 caTATGGTTTCATTCAGCACTCA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222795 23 + 173848474 caTATGGTTTCATTCAGCACTCA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023724 23 +   6154872 caTATGGTTTCATTCAGCAGTCA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706677 23 + 122973662 catatgggttCATTCAGCACTCA
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          83556 23 +    243043 cagatgggttcattgaGCATTCA
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29143963 23 -  71996105 caATTGGGTTCATTCAGCACTCA
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          58601 23 -    735854 catacgggttCATTTAGCACTCA
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2856476 23 -   3067355 CAGATGGGTTCATTCAGCACTCA
i colAng1.NW_012115566v1       C 0 C 0
s aotNan1.NW_018509740v1         418094 23 -    457564 taggtggttaCATTCAGCACTCA
i aotNan1.NW_018509740v1       C 0 I 1705
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         337540 1102 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547 26 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=543372.000000
s hg38.chr6_GL000254v2_alt      1026532 216 +   4827813 TTCACTGTGAAAGTGTCTGTCAGGGCCAATTGTGGGCCAgatgtgcccggggttctatagctagctggtggaaaggcctgaagggttcatattcaggtccacttgacttgaaaactcatattGACCTTACTTATGTACTAATTCCCACTTTAcaatccatgccacaaactttattg-----tc-----ttaagaagttgccacagcagccttcagcagccac-cttg
s panTro5.chr6                 29989076 216 + 175400573 TTCACTGTGAAAGTGTCTGTCAGGGCCAATTGTGGGCCAgatgtgcccagggttctatagctagctggtggaaaggactgaagggttcatattcaggtccacttgacttgaaaactcatattGACCTTACTTATGTACTAATTCCCACTTTAcagtccatgccacaaactttattg-----tc-----ttaagacattgccacagcagccttcagcagccac-cttg
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30222818 216 + 173848474 TTCACTGTGAAAGTGTCTGTCAGGGCCAATTGTGGGCCAgatgtgcccagggttctatagctagctggtggaaaggcctgaagggttcatattcaggtccacttgacttgaaaactcatattGACCTTACTTATGTACTAATTCCCACTTTAcagtccatgccacaaactttattg-----tc-----ttaagacattgccacagcagccttcagcagccac-cttg
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023747 215 +   6154872 TTCACTGTGAAAGTGTCTGTCAGGGCCAATTGTGGGCCAgatgtgcccagggttctatagctagctggtggaaaggcctggagggttcatattcaggtccacctgacttgaaaactcatattgacctta-ttatgtactAATTCCCACTTTAcaatccatgccacaaactttattg-----tc-----ttaagaagttgccacagcagccttcagcagccac-cttg
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706700 221 + 122973662 CTCACTGTAAAAGTGTCTGTCAGGGCCAACTGTGGGCCAGATGTGGCCACGGCTCTACAGCTAGGTGGTGGAAAGGCCTGGAGTGTTCATGTTCAGGTTCACTGGAC-TGAACACTCAAATTGAGCTTACCTAAGTACTGATTCCCACTTTAcaatccacgccacaaactttattgtcttatc-----ttaagaagttgccacagcagccttcagcagccccgcttg
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          83579 205 +    243043 CTCACTGGGCAAGTGTCTGTCAAGGCCAACTGTGGGCCAGATGTGCCCAGGGCTCTATAGCTAGCTGGTGGAAGGGCCTGGAGGGTTCATATTCAGGTTCAC--AGATTGAAAACTCATATTGACCTTACTTAAGCACTGATTCCTGCTTTAcaatccatgccacaaacttcattg-----tc-----ttaagaagttgccacagcagcccccg----------ttg
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29143986 222 -  71996105 CCCACTGGCCAAGTGTCTGCTTGCGCCAGCTGTGGGTCAGATGTACTCAAGGCTCTATAGCTAACTGGTGGAAAGGCCTGGAGGGCTCATATTCAGGTTCACTTAACTCGAAAACTCATATTGACCTTACTTAAGTACTGATTCCTGCTTTGcaatccacgccacaaactttattg-----tcttattttaagaaattgtcacagaagcctctaggaaccacgctcc
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          58624 204 -    735854 CTCACTGGGCAAGTGCCTGTCAGGGCCAACTGTGGGCCAGATGTGC-CAGGGCTCTATAGCTAGCTGGTGGAAGGGCCTGGAGGGTTCATATTCAGGTTCAC--AGATTGAAAACTCATATTGACCTTACTGAAGCACTGGTTCCTGCTTTAcaatccatgccacaaactttattg-----tc-----ttaagaagttgccacagcagccccca----------ttg
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2856499 222 -   3067355 CCCACTGGGCAAGTGTCTGTTGAGGCCGGTTGTGGGCCAgatgtgcccaaggctcgacagctagctggtggaaaggcctggagggttcatattcaggtccacctgacttgaaaactcatattGACTTTACTTAAGTACTGATTCCCCCTTTATaatccatgctgcatacttcattg-----tcttattttaagtaattgctacagcagcctttagcaaccaccctcc
i colAng1.NW_012115566v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         418117 1705 -    457564 I
e cebCap1.NW_016107755v1         337540 1102 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547  26 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=154028.000000
s hg38.chr6_GL000254v2_alt      1026748 45 +   4827813 tgatcagtcagcagtcatcaacattgaggcaagaccctactccag
s panTro5.chr6                 29989292 45 + 175400573 tgatcagtcagcagtcatcaacattgaggcaagaccctcctccag
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30223034 45 + 173848474 tgatcagtcagcagtcatcaacattgaggcaagaccctcctccag
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6023962 45 +   6154872 tgatcagtcagcagtcatcaacattgaggcaagaccctcctccag
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74706921 45 + 122973662 tgatcagtcagcagtcatcaacacagaggcaagactctcccgcag
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          83784 45 +    243043 tggtcagtcagcagtcatcaacattgaggcaagaccctcttccag
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29144208 45 -  71996105 tgatcagccagcagtcatcaacactgaggcaagaccctcccccag
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          58828 45 -    735854 tggtcagtcagcagtcatcaacattgaggcaagaccctcgtccag
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2856721 43 -   3067355 tgatcagccagaagtcatcaacattgaggcaaga--ctcccacag
i colAng1.NW_012115566v1       C 0 C 0
s aotNan1.NW_018509740v1         419822 45 -    457564 tgaccagtcagcagtcatcagcactgaggcaagagcctgtaccta
i aotNan1.NW_018509740v1       I 1705 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         337540 1102 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547 26 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=202861.000000
s hg38.chr6_GL000254v2_alt      1026793 51 +   4827813 caaaaacattagtattagctgaagcctcagatgactgttagcattttttag
s panTro5.chr6                 29989337 51 + 175400573 caaaaacattagtattagctgaagcctcagatgactgttagcattttttag
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30223079 51 + 173848474 caaaaacattagtattagctgaagcctcagatgactgttagcattttttag
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6024007 51 +   6154872 caaaaacattagtattagctgaagcctcagatgactgttagcattttttag
i gorGor5.CYUI01015250v1       C 0 I 1455
s nomLeu3.chr1a                74706966 50 + 122973662 caaaaagattagtattagctgaagcctcagatgactgttagcatttttag-
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          83829 51 +    243043 caaaaatattagtattagctgaaggctctgatgactgtttgcattttttag
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29144253 51 -  71996105 caaaaagattaagatgagccgaagcctcagacgatcgttagcatttttcag
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          58873 51 -    735854 caaaaatattagtattagctgaaacctccgatgactgcttgcatttttcag
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2856764 51 -   3067355 caaaaagactaagatgagctgaagcctcagactattgttagtgttttttag
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         338642 51 -   1771730 caaaaagattagggttagctgaagcatcaggtgattgttagcattttttag
i cebCap1.NW_016107755v1       I 1102 C 0
s aotNan1.NW_018509740v1         419867 51 -    457564 caaaaagattaggattagctgaagcctcagatgactgttagcattttttag
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547 26 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=457782.000000
s hg38.chr6_GL000254v2_alt      1026844 140 +   4827813 cagtagtgtaatttttaattaaggtatgtacatatct-attttatacataatgctattgtatacttaataggc-----taaagtataaatataacttttatgtacactacaaaa-acaaaaaa--attgtgtgacttgttttgtttgc-------a
s panTro5.chr6                 29989388 140 + 175400573 cagtagtgtaatttttaattaaggtatgtacatatct-attttatacataatgctattgtatacttaataggc-----taaagtataaatataacttttatgtacactacaaaa-acaaaaaa--attgtgtgacttgttttgtttgc-------a
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30223130 140 + 173848474 cagtagtgtaatttttaattaaggtatgtacatatct-attttatacataatgctattgtatacttaataggc-----taaagtataaatataacttttatgtacactacaaaa-acaaaaaa--attgtgtgacttgttttgtttgc-------a
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6025513 140 +   6154872 cagtagtgtaatttttaattaaggtatgtacatatct-attttatacataatgctattgtatacttaataggc-----taaagtataaatataacttttatgtacactacaaaa-acaaaaaa--attgtgtgacttgttttgtttgc-------a
i gorGor5.CYUI01015250v1       I 1455 C 0
s nomLeu3.chr1a                74707016 146 + 122973662 cagtagcataattataaattaaggcaggtacatacct-agtttatacataacgttattgtacaactaacagtccataatacagtataaatataacttttatatgcattgcaaaacaaaaaaaa--attctgtgacttgttttgctgGC-------A
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          83880 143 +    243043 cagtagtataattataaattaaggtatgtacatattt-attttatacataatgttattgtacacttaatagtctacaatagaatataaatataatttttgtatgtactgcaaaa-ccaaaaca--at--tgtgacttgttttgttggc-------a
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29144304 151 -  71996105 caatagagtaattttaaattaatgtatctgcatagtt-cttttacacataatgttattatacatttagtaggctacagtagagtataaatataatttttatattcactggaaaa-acaaaaat--tt-gtgtgacttgctttgttgccatggtcta
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          58924 143 -    735854 aagtagtataattataagttaaggtatgtacatatct-attgtatatataatattattgtacacttaatagtctataatagagtataaatataatttttatatgcactgcaaaa-ccaaaaca--at--tgtgacttgttttgttgGC-------A
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2856815 144 -   3067355 aaatagagtaattttacattaaagtatgtacatagtt-cttttatacataatgctactgtacatttaataggctacagtagattgtaaatataacttttgtatgcactgaaaaa-agaaaaat--gt-gtgtgatttgctttcttgcC-------A
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         338693 145 -   1771730 aaataaagttattttacattaagttgtgtacatagctcatttaatacataatgctattgtacacttaatagactacagtagagtgtaaatatgacttttgtatgcactagataa-acaaaatc--tt-gtgtgacttgctttgttgtc-------a
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         419918 147 -    457564 aaataaagtaattttacattaagggatgtatatagctcatttaatacataatgctattgtacacttagtagacttcagtagagtataaatatgacttttgtttgcacccaaaaa-acaaaaacaaat-gtgtgacttgctttgttgtc-------a
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547  26 +    231697 I
e rheMac8.chr4                 30223269 4758 + 172585720 I

a score=627470.000000
s hg38.chr6_GL000254v2_alt      1026984 128 +   4827813 tgatctgaaaccaaatctgcaatctctctgagatatgtctgTAATTTCCCTTTCCCTCTTCTTGCTGGCCCAGAATGACCTTGTTTCTTGTCCCTGTCTAGCCCTGCCTGTTACAGGGGTTTGCCTTC
s panTro5.chr6                 29989528 128 + 175400573 tgatctgaaaccaaatctgcaatctctctgagatatgtctgTAATTTCCCTTTCCCTCTTATTGCTGGCCCAGAATGACCTTGTTTCTTGTCCCTGTCTAGCCCTGCCTGTTGCAGGGGTTTTCCTTC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30223270 128 + 173848474 tgatctgaaaccaaatctgcaatctctctgagatatgtctgTAATTTCCCTTTCCCTCTTCTTGCTGGCCCAGAATGACCTTGTTTCTTGTCCCTGTCTAGCCCTGCCTGTTGCAGGGGTTTGCCTTC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6025653 128 +   6154872 tgatctgaaaccaaatctgcaatctctctgagatatgtctgTAATTTCCCTTTCCCTCTTCTTGCTGGCCCAGAATGACCTTGTTTCTTGTCCCTGTCTAGCCCTGCCTGTTGCAGGGGTTTGCCTTC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74707162 128 + 122973662 TGGTCTGAAACCAAATCCACAGTAACTCTGAGGTATGTCTGTAATTTCCCTTTCCACCTTCTTGCTGGCCCAGAATGACCTTGTCTCTTGTCCCTGTCTAGCCCTGCATGATGTACGGGTTTGCTTTC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30228027 127 + 172585720 tgatctgaaaccaaatctgcagtgtctcagatgtatgtcCATAATTTCCCTTTCCCTCTTCTTGC-GGCCTAGAATGAACTTGTTTCTTGCCTCTGTCTAGCCCTGCATGCTGTAGGGGTTTGCCTTC
i rheMac8.chr4                 I 4758 C 0
s macNem1.NW_012013156v1          84023 128 +    243043 tggtctgaaaccaaatctgcaataactctgaggtgtgtctgTAATTTCCCTTTCCCTCTTCTTGCTGGCCCAAAATGACCTTGTTTCTTGTCCCTGTCTAGCCCTGCATGCTGTAGGGGTTTGCTTTC
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29144455 127 -  71996105 tggtctgcaaccaaatctgcagtgtctcagatgtatgtctACAATTTCCCTTTCCCTCCTCTTGC-GGCCTAGAATGAACTTGTTTCTGGTCTGTGTCTAGCTCTGCATGCTGTAGGGGTTTGCCTTC
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          59067 128 -    735854 TGGTCTGAAACCAAATCTGCAATAACTCTGAGGTGTGTCTGTAATTTCCCTTTCCCTCTTCTTGCTGGCCCAGAATGACCTTGTTTCTTGTCCCTGTCTAGCCCTGCATGCTGCAGGGGTTTGCTTTC
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2856959 128 -   3067355 CGGTCTGAAACCAAATCTGCAGTATCTCTGACGTATGTCTGTAGTTTCCCTTTCACTCTTTTTGCTGGCCCTGAATGAACTTGTTTCTTGTCCCTGTCTAGCCCTGCATGCTGTAGGGGTTTACTTTC
i colAng1.NW_012115566v1       C 0 T 49284
s cebCap1.NW_016107755v1         338838 127 -   1771730 tggcctggaaccaaatctgcaaaatcttcaaggtatgtctgTCATTTCCCTTTCCCTCTTCTTGGTGGCAAAAAATGACCTTGTTTCTTG-CCCTGTCTAGCCCTGCATGCTGTAGGGGTTTCTCTTC
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         420065 127 -    457564 tggtctgcaaacaaatctgcaaaatctccaagatacgtctgTAATTTCCCTTTCCCTCTTCTTGCTGGCTAAGAATGGCCTTGTTTCTTG-CCCTGTCTAGCCCTGTACGCTGTAGGGGTTTGTCTTC
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547  26 +    231697 I

a score=915747.000000
s hg38.chr6_GL000254v2_alt      1027112 237 +   4827813 TCTGGTAGGTCTGGACACTTTGTACCCCCTGTAACCTTGCCTCCTGGCATATGACACTAGTACTAGCCTCAAGCTCTGTTGGACTAGCGAGCCTCACTCCACACCTCCT-GAACTAGAACCAAAGCTCTGTGCACACACCATTCA--TGTGAGTC--TGTAGAGATCTCAGCTTCCTGCAGGGTGTTCTGAAACGGTGTTCTGTTGTGACTGGAGGGCATAGCCACAGGTCTCTGGGCAGAG
s panTro5.chr6                 29989656 237 + 175400573 TCTGGTAGGTCTGGACACTTTGTATCCCCTGTAACCTTGCCTCCTGGCATATGACACTAGTACTAGCCTCAAGCTCTGTTGGACTAGCGAGCCTCGCTCCACACCTCCT-GAACTAGAACCAAAGCTCTGTGCACACACCATTCA--TGTGAGTC--TGTAGAGATCTCAGCTTCCTGCAGGGTGTTCTGAAAGGGTGTTCTGTTGTGACTGGAGGGCATAGCCACAGGTCTCTGGGCAGAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30223398 237 + 173848474 TCTGGTAGGTCTGGACACTTTGTATCCCCTGTAACCTTGCCTCCTGGCATATGACACTAGTACTAGCCTCAAGCTCTGTTGGACTAGCGAGCCTCGCTCCACACCTCCT-GAACTAGAACCAAAGCTCTGTGCACACACCATTCA--TGTGAGTC--TGTAGAGATCTCAGCTTCCTGCAGGGTGTTCTGAAAGGGTGTTCTGTTGTGACTGGAGGGCATAGCCACAGGTCTCTGGGCAGAG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6025781 237 +   6154872 TCTGGTAGGTCTGGACACTTTGTATCCCCTGTAACCTTGCCTCCTGGCATATGACACTAGTACTAGCCTCAAGTTCTGTTGGACTAGCGAGCCTCCCTCCACACCTCCT-GAACTAGAACCAAAGCTCTGTGCACACACCATTCA--TGTGAGTC--TGTAGAGATCTCAGCTTCCTGCAGGGTGTTCTGAAAGGGTGTTCTGTTGTGACTGGAGGGCATAGCCACAGGTCTCTGGGCAGAG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74707290 239 + 122973662 TCTGGTAGGTCTGGACACTTTGTATCCCTTGTAACCTTGGCTCCTGGCATATGACACTGCTACTAGCCTCCAGCTCTGTTGGACTAGTGAGCCTCCCTCTACACCTCCT-GAACTAGAACCAAAGCTCTGTGCACACACCATTCG--TGTGAGTCTGTGTAGAGATGTCAGCTTCCTGCAGGGTGTCCTAAAAGGGTGTTCTGTTGTGACTGGAGGGCATAGCCACAGGTCTCTGGGCAGAG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30228154 234 + 172585720 TCTGGTAGGTCTGGGAACTTTGCAT-CCTTGTAACCTTGGCTCCTGGCATATGACACTGGTAC------CAAGCTCTGTTGGACTAGTGAGCCTCCCCACACACCTCCT-GAACGAGAGCAAAAGCTCTGTGCACACACCAAGCATGTGTGAGCCTGTGAGGAGATGCCGCCTTCCTGAAGGGTGTTCTGAAGGGGTTTTCTGTTGTGACTGGAGGACACAGCCATGAGCCCGCGGGCAGAG
i rheMac8.chr4                 C 0 C 0
s macNem1.NW_012013156v1          84151 238 +    243043 TCTGGTAGGTCTGGACACTTTGTATCCCTTGCAATCTAGGCTCTTGGCTTATGACACTAGTACTAGCCTCAAACTCTGTTGGACTAGTGAGCCTCCCTCCACACCT-CT-GAACTAGAACCGAAGCTCTGTGCACACACCATTCA--CGTGGGTCTGTATAGAGATGTCAGCTTCCTGCAGGGTGTTCTGAAAGCGTGTTCTGTTGTGACTGGAGGGCATAGCCACAGGTCTCTGGGCAGAG
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29144582 224 -  71996105 TCTGGTAGGTCTGGGAACATTGTATCCCTTGTAACCCTGGCTCCTGGCATATGACACTGGTAC------CAAGCTCTGTCGGACTAGTGAGCCTCCCCACACATCTC------------CAAAAGCTCTGTGCACACACCAAGCATGTGTGAGCCTGTGAGGAGATGCCGCCTTCCTGAAGGGTGTTCGGAAGGGGTTTTCTGTTGTGACTGGAGGACACAGCCATGAGCCCCTGGGCAGAG
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          59195 239 -    735854 TCTGGTAGGTCTGGACACTTTGTATCCCTTGTAACCTAGGCTCTTGGCTTATGATACTGGCACTAGTCTCAAGCTCTGTTGGACTAGTGAGCCTCCCTCCATACCTCCT-GAACTAGAACCGAAGCTCTGTGCATACACCATTCA--TGTGGGTCTGTATACAGATGTCGGCTTCCTGTAGGGTGTTCTGAAAGCGTGTTCTGTTGTGACTGGAGGGCATAGCCACAGGTCTCTGGGCAGAG
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         338965 241 -   1771730 TCTGATAGGTCTGGGCACTTTGTATCCCTTGTGACCTTGGCTCCTGGCATATAACACTGGTACAGGCCTCAAGCTCTGCTGGACTAGTCAGCC-TCCCCAGCACCTCCTGAAACTAGAACCAAAGTCCTGTGCACACACGGTGCATGTGTGAGCCTCTGTGGAGATGTTGGCTTCCTGCGGGGTGTTCTGATGGATTGTCCTGTTGTGTGTGGGGGGCACAGCCATAGGCCCCTGGGCAAAG
i cebCap1.NW_016107755v1       C 0 I 22
s aotNan1.NW_018509740v1         420192 241 -    457564 TCTAGTAGGTCTGGGCACTTTCTATTCCTGGTAACCTTGGCTCCTGGCATATGACACTGGTACACGCCTCAAGCTCTATTGGACTAGTGAGCCTTCCCCGACACCTCCT-CAATTAGAACCGAAGCTTGGTGCACACAGGGAGCATGTGTGAGCCTGTGTGGAGATGTTGGCTTCTTACGGGGTGTTCTGAAGGGATGTCCTGTTGTGAGTGGAGGGCACAGCCACAGGCCCCTGGGCAGAG
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547  26 +    231697 I

a score=95615.000000
s hg38.chr6_GL000254v2_alt      1027349 33 +   4827813 GTGGCTCAGAAAAGAGTGG-----GTGGCCCCAGTTTG
s panTro5.chr6                 29989893 33 + 175400573 GTGGCTCAGAAAACAGTGG-----GTGGCCCCGGTTTG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30223635 33 + 173848474 GTGGCTCAGAAAAGAGTGG-----GTGGCCCCGGTTTG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6026018 33 +   6154872 GTGGCTCAGAAAAGAGTGG-----GTGGCCCCGGTTTG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74707529 33 + 122973662 GTGGCTCAGAAAAGAGTGG-----ATGAACCCAGTTTT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30228388 33 + 172585720 GTGGCTCAGAAGGAAGTGG-----ATGGCCCCAGTTTT
i rheMac8.chr4                 C 0 C 0
s macNem1.NW_012013156v1          84389 33 +    243043 GTGGCTCAGAAAAGAGTGG-----ATGACCCCAGTTTT
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29144806 33 -  71996105 GTGGCTCAGAAGGAAGTGG-----ATGGCTCCAGTTTT
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          59434 33 -    735854 GTGGCTCAGAAACGAGTGG-----ATGACCCCAGTTTT
i manLeu1.NW_012107142v1       C 0 C 0
s aotNan1.NW_018509740v1         420433 29 -    457564 ---------AAGGGAGTAGATGACATGACATCAGTTTT
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         339206 22 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547 26 +    231697 I

a score=731936.000000
s hg38.chr6_GL000254v2_alt      1027382 191 +   4827813 GGTCATCTGGGAAGGGGAAGATTTTCAGATAAAAACCCATGCCTTAGAAGACAAAACTACCCAAGAGCTGGCAGCAGCTAACCAGCTTGCTATCTGGGATATCACTCTGCAGTG----GGAGGGAAGATAGCCTCTACCATGGTGTAGGGGTCCAGGGACCAGGCAGGGAGGTCTTCCTAGTGGTCAGTGCTTCT
s panTro5.chr6                 29989926 191 + 175400573 GGTCAGCTGGGAAGGGGAAGATTCTCAAATAAAAACCCATGCCTTAGAAGACAAAACTACCCAAGAGCTGGCAGCAGCTAACCAGCTTGCTATCTGGGATATCACTCTGCAGTG----GGAGGGAAGATAGCCTCTACCATGGTGTAGGGGTCCAGGGACCAGGCAGGGAGGTCTTCCTAGTGGTCAGTGCTTCT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30223668 191 + 173848474 GGTCAGCTGGGAAGGGGAAGATTCTCAAATAAAAACCCATGCCTTAGAAGACAAAACTACCCAAGAGCTGGCAGCAGCTAACCAGCTTGCTATCTGGGATATCACTCTGCAGTG----GGAGGGAAGATAGCCTCTACCATGGTGTAGGGGTCCAGGGACCAGGCAGGGAGGTCTTCCTAGTGGTCAGTGCTTCT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6026051 191 +   6154872 GGTCAGCTGGGAAGGGGAAGATTCTCAGATAAAAACCCATGCCTTAGAAGACAAAACTACCCAAGAGCTGGCAGCAGCTAACCAGCTTGCTATCTGGGATATCACTCTGCAGTG----GGAGGGAAGATAGCCTCTACCATGGTTTAGGGGTCCAGGGACCAGGCAGGGAGGTCTTCCTAGTGGTCAGTGCTTCT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74707562 190 + 122973662 GGTCATCTGGGAATAGGAAGATTCTCAGATAAAAACCCATGCCTTAGAAGGCAACATTGCCACAAAACTGGTAGCGGCTAACC-GTTTGCTATCTGGGACATCACTCTGCAGTA----GGAGGGAAGATGGCCTCTGCCATGGTGTAGGGGTCCAGGAACCAGGCAGGGAGGTCTTCCTAGTGGTCAGTGCTTCT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30228421 191 + 172585720 GATAATCTGGGAACAGGAAGATTCTCAGATAAAAACCCATGTTTTAGAAGACAGAACTGCCCAAGAGAGGACAGCAGCTAACCAGTTTGTTATCTGAGACATCGCTGTGCACTG----GGAGGGAAGATGGCCTCTGCCATGGGGTAGGGGTCCTGGACCAAGACAAGGAGGCCTTCCTAGGGGGCAGTGCTTCT
i rheMac8.chr4                 C 0 C 0
s macNem1.NW_012013156v1          84422 195 +    243043 GGTCATCTGGGAACAGGAAGATCCTGAGACAAAAACCCATGCCTTAAAAGACAACACTGCCCCAAAGCTGGCAGTGGCTAGCCAGCTTGCTATCTGGGACATCACTCTGCAGTGGGGAGGGGGGAAGATGGCCGCTGCCATGGTGTAGGGGTCCAGGAACCAGGCAGGGAGGCCTTCCTATGGGTCAGCACTTCT
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29144839 191 -  71996105 GATCATCTGGGAACAGGAAGATTCTCAGATAAAAACCCATGTTTTAGAAGACAAAACTGCCCAAGAGAGGACAGCAGCTAACCAGTTTGTTATCTGGGACATCGCTGTGCACTG----GGAGGGAAGATGGCCTCTGCCATGGGGTAGGGGTCCTGGACCAAGACAAGGAGGCCTTCCTAGGGGGCAGTGCTTCT
i chlSab2.chr17                C 0 I 353
s manLeu1.NW_012107142v1          59467 169 -    735854 GGTCATCTGGGAACAGGAAGATCCTGAGAC-----CCCATGCCTTAGAAGACAACACTGCCCCAAAGCTGGCAGCAGCTAAACAGCTTGCTATCTGGGACATCACTCTGCACTG----GCGGGGAAGATGGCCGCTGCCATGGTGTAGGGGTCCAGGAA-----------------CCTATGGGTCAGTGCTTCT
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         339228 191 -   1771730 GAACATCAGGACACAGGAAGGTCCTCAGACAAAAATCCATGCATTAGAAGGCAAAACTGCCCAAGAGAGGGCAGCTGCTAGCCAGCTTGCTATCTGGGACGTCACTCTGCACTG----GGAGGGAAGATGGCCTCTGCCATGGTGTAGGGGACCAGGACCCAGGCAGGGAGGCCTTCCTAGTGGTCAGCACTCTT
i cebCap1.NW_016107755v1       I 22 C 0
s aotNan1.NW_018509740v1         420462 191 -    457564 GATCATCTGGACACAGGAAGGTCCTCAGACAAAAATTCATGCCTTAGAAGGGAAAACTGCCCGAGAGTAAACAGCTGCCAGCCAGCTTGCTCTCTGGAACATCACTCTGCACTG----GGAGGGAAGATGACCTCTGCCATGGTATAGGGCTCCAGGACCCAGGCAGGGAGGCCTTCCTAATGGTTGACACTCCT
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547  26 +    231697 I

a score=50397.000000
s hg38.chr6_GL000254v2_alt      1027573 18 +   4827813 CACAGTTGGGAGATGAAT
s panTro5.chr6                 29990117 18 + 175400573 CACAGTTGGGAGTTGAAT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30223859 18 + 173848474 CACAGTTGGGAGTTGAAT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6026242 18 +   6154872 CACAGTTGGGAGTTGAAT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74707752 18 + 122973662 CACAGTTGGGAGCTGAAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30228612  7 + 172585720 T-----------CCGAAG
i rheMac8.chr4                 C 0 C 0
s macNem1.NW_012013156v1          84617 18 +    243043 CACAGTTGGGAGCTGAAT
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          59636 18 -    735854 CACAGTTGGGAGCTGAAT
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         339419 18 -   1771730 CACAGTTGGGAGCTGAAG
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         420653 18 -    457564 CACAGTTGGGAGCTGAAG
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e chlSab2.chr17                29145030 353 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547 26 +    231697 I

a score=432213.000000
s hg38.chr6_GL000254v2_alt      1027591 106 +   4827813 CACCTTTCGATGAggccaaagacctcatgttcctcactagctgacttgttcccactcagtg-gaaaaagaacccagaacctttgcaaaattttaggagagaaggact
s panTro5.chr6                 29990135 106 + 175400573 CACCTTTCGATGAggccaaagacctcatgttcctcactagctgacttgttcccactcagta-gaaaaagaacccagaacctttgcaaaattttaggagagaaggact
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30223877 106 + 173848474 CACCTTTCGATGAggccaaagacctcatgttcctcactagctgacttgttcccactcagta-gaaaaagaacccagaacctttgcaaaattttaggagagaaggact
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6026260 106 +   6154872 CACTTTTCGATGAggccaaagacctcatgttcctcactagctgacttgttcctattcagtg-gagaaagaacccagaacctttgcaaaattttaggagagaaggact
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74707770 106 + 122973662 CACCTTTCGATGAggccaaacacctcatgttcctcactagctgacttattcccactcagtg-gaaaaagaacccagaatctttgcaaaattttaggagagagaaact
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30228619 106 + 172585720 CACCTTTAAATTAGGACAAAGACCTCATGTTCATCATTAGCTGACTTGCACCCACTGAGTG-GAGAAAGAAACCAGAACTTTTGCAAAATTTTAGGAGAGGGGGACT
i rheMac8.chr4                 C 0 I 31644
s macNem1.NW_012013156v1          84635 106 +    243043 TACCTttagatgaggcctaagacctcacgttcgtcactagctgacttattcccactcagtg-gaaaaagaactcagaaccttcgcaaaattttaggagagagaaact
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29145383 106 -  71996105 CACCTTTAAATGAGGACAAAGACTTCATGTTCATCATTAGCTGACTTGAACCCACTCAGTG-GAAAAAGAAACCAGAACTTTTGCAAAATTTTAGGAGAGGGGGACT
i chlSab2.chr17                I 353 C 0
s manLeu1.NW_012107142v1          59654 106 -    735854 CACCTttagatgaggcctaagacctcacgttcctcactagctgacttattcccactcagtg-gaaacagaacccagaaccttcgcaaaattttaggagagagaaact
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         339437 106 -   1771730 CACCTCtagatgaggccaaagacctcatgttcctcattagctgacttgttcccactcagca-gaaaaagaacccagaaactttataaaattttacaggagagggact
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         420671 106 -    457564 CACCTTTAGAGGAGGACAAAGACTTCTTGTTCCTCATTAGCTGAC-TGTTCCCACTCAGTGCAAAAAAGAACCGAGAAACTTTGTGAAATTTTGCAGGAGAGGGACT
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547  26 +    231697 I

a score=450039.000000
s hg38.chr6_GL000254v2_alt      1027697 129 +   4827813 ttccctcttttctcttagtgccagggttatgcatgactcatacttgaattgcaatgtgtacacagcttaaagtcttaattattagaacataagaggcccaaaccactgttgttatagatatgtaaaact
s panTro5.chr6                 29990241 129 + 175400573 ttccctgttgtctcttagtgccagggttatgcatgactcatacttgaattgcaatgtgtacacagcttaaagtcttaattattagaacataagaggcccaaaccactgttgttatagatatgtaaaact
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30223983 129 + 173848474 ttccctgttgtctcttagtgccagggttatgcatgactcatacttgaattgcaatgtgtacacagcttaaagtcttaattattagaacataagaggcccaaaccactgttgttatagatatgtaaaact
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6026366 128 +   6154872 ttccctcttgtctcttagtgccagggttatgcatgactcatacttgaattgcaatgtgtacacag-ttaaagtcttaattattagaacataagaggcccaaaccactgttgttatagatatgtaaaact
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74707876 129 + 122973662 ttccctattgtcttgtagtgctagggttatgcctgactcatacttgaattgcaatgtgtacacagcttaaagacttaattattagaatataagaggcccaaactactgttgttatagatttgtaaaact
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          84741 129 +    243043 ttcccacttgtctcatagtgctagggttatgcatgactcatgcgtgaactgcaatgtgcacacagcttccagtcttaattattagaatataagaggcccaaactactgttgttatagatatgtaaaact
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29145489 129 -  71996105 GTCCGCCCTGTCTCttagtcctagggttgtgcatgactcatgcttgaattgcaatgtgtacacagcttaaagtcttaattattagaatataagaggcccaaactactgttgttatagatatgtaaaact
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          59760 129 -    735854 tttcctcttgttgcatagtgctagggttatgtatgactcatgcgtgaattgcaatgtgtacacggcttacagtcttaattattagaatataagaggcccaaactactgttgttatagatatgcaaaact
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         339543 129 -   1771730 ttcccttttgactcttagtgccagggttatgcatgactcatacttgcattgtgatgtgtacacaacttaaagtcttaattattagaatatgagaggcccaaatgactgttgttatagatatgtgaaact
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         420777 129 -    457564 TTCGGTTTTGACTCttagtgccagggttatgcatgactgatacttgcactgcaatgtagacacagcttaaagtcttaactattagaatataagaggtccaaatgactgttgttatacatatgtgaaact
i aotNan1.NW_018509740v1       C 0 I 17
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547  26 +    231697 I
e rheMac8.chr4                 30228725 31644 + 172585720 I

a score=553230.000000
s hg38.chr6_GL000254v2_alt      1027826 222 +   4827813 atgcagtacaaaattaaacaacccccaaccaattaacagtggagataaattatcaatatttgtaaatttaaaacaagatcgacagccctttagaaaa---aca----ac-aaaaaatgagacttttgcaagacaatctaaatgatacgctaataacaaaccttcatgaaaatgacatttcgaccatctgAGTTTCTGCTTTAAGTTACAAATTCCAAAAGGTACTAATCC
s panTro5.chr6                 29990370 222 + 175400573 atgcagtacaaaattaaacaacccccaaccaattaacagtggagataaattatcaatatttgtaaatttaaaacaagatcgacagccctttagaaaa---aca----ac-gaaaaatgagacttttgcaagacaatctaaatgatacgctaataacaaaccttcatgaaaatgacatttcaaccatctgAGTTTCTGCTTTAAGTTACAAATTCCAAAAGGTACTAATCC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30224112 222 + 173848474 atgcagtacaaaattaaacaacccccaaccaattaacagtggagataaattatcaatatttgtaaatttaaaacaagatcgacagccctttagaaaa---aca----ac-gaaaaatgagacttttgcaagacaatctaaatgatacgctaataacaaaccttcatgaaaatgacatttcaaccatctgAGTTTCTGCTTTAAGTTATAAATTCCAAAAGGTACTAATCC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6026494 223 +   6154872 atgcagtacaaaattaaacaacccccaaccaattaacagtggagataaattatcaatatttgtaaatctaaaacaagatcgacagctctttagaaaa---aca----acaaaaaaatgagacttttgcaagacaatctaaatgatacgctaataacaaaccttcatgaaaatgacatttcaaccatctgAGTTTCTGCTTTAAGTTACAAGTTCCAAAAGGTACTAATCC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74708005 225 + 122973662 acacagcacaaaattaaacaacccacaaccaattaacagtggagataaattaactccatttgtaaatttaaaacaagatcgacagccatttagaaaaaacaaa----ac-gacaaatgagacttttgcaagacagtctatatgatatgctaataacaaagcttcatgaaaatGACATTTTGACCGTCTTAGTTTTGGCTTTAGGTTATAAACTCCAAAATGGACTAACCC
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          84870 225 +    243043 acacagtacaaaattaaacaatccacaaccaattaacagtggagataaattaaccccatttgtaaatttaaaacaagatcgacagtcatttagaaaa---aaaaaa-aa-tacaaatgagacttttgcaagacagtctatatgatatgctaataacaaagcttcatgaaaatgacatttcaaccatttTAGTTTTGGCTTTAGGTTATAGACTCCAAAATGGACTAACCC
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29145618 209 -  71996105 acacagtataaggttaaccaacccacaacc-----------------aactaactacatttgtaaatttaaaacaagattggcagtcatttagaaaa---aaaaaacaa-aacaaatgagacttttgcaagacaatctaaatggtacactactaacaacccttcatgaaaatgacgtttcaaccatctgAGTTTCTGCTTTAAGTTATAGACTCCAAAATGGACTAACCG
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          59889 222 -    735854 acacagtacaaaattaaacaatccacaaccaattaacagtggagataaattaactccatttgtaaatttaaaacaagatcaacagccatttagaaaa---aaa----aa-tacaaatgagacttttgcaagacagcctatatgataggctaataacaaagcttcatgaaaatgacatttcggccatctTAGTTTTGGCTTTAGGTTATAAACTCCAAAATGGACAAACCC
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         339672 219 -   1771730 atata-catacggttagacaacctgcaaccaattaacattgaagataaaataatcacatttgtaaatttaaaacaatattggcagccatctaggaaa---aaa----ac--acaaatgagacttttgcaaaacagtctaaatgatacactaataacaatcttttgtgaaaatgacatttcaaccatctgTGTTTCTGCTTTAGGTTATAAA-TCCAAAATGGAGTAACCC
i cebCap1.NW_016107755v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         420906  17 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547  26 +    231697 I
e rheMac8.chr4                 30228725 31644 + 172585720 I

a score=1305231.000000
s hg38.chr6_GL000254v2_alt      1028048 391 +   4827813 CCAATAATTTACAGTAGGGAGCCCTAAGCCACAAAGAAAGGTGTCAGGGCACACCTGAGACCTGAAGTGAGAACATACCCTCCCTCAGGGTCACGAGTGAATCCTCTAAGACCCCTCCTCCCTCAGACACTCCATCCAGTCATCAGAAGGTC----------CACACAGCACTAAGACCCAACCACCTCACTGTCTTCACCTCCATGGAGAGAGCCCAGG---------------------TGACAGCCacccctgctcctcctccttcatctcccacagcctcagc-accatcgtctgcctcgagtccaccaggactgagctcctcatgccctttccctgtttgtgtcagtcacactgggtcccccatatacccagcacttgcatc---------cccacaaggctccgcacgctc-tattctgtcccccca
s panTro5.chr6                 29990592 391 + 175400573 CCAATAATTTACAGTAGGGAGCCCTAAGCCACAAAGAAAGGTGTCAGGGCATACCTGAGACCTGAAGTGAGAACATACCCTCCCTCAGGGTCACGAGTGAATCCTCTGAGGCCCCTCCTCCCTCAGACACTCCATCCAGTCATCAGAAGGTC----------CACACAGCACTAAGACCCAACCACCTCACTGTCTTCACCTCCATGGACAGAGCCCAGG---------------------TGACAGCCacccctgctcctcctccctcatctcccacagcctcagc-accatcgtctgccttgagtccaccaggactgagctcctcatgccctttccctgtttgtgtcagtcacactgggtcccccatatacccagcacttgcatc---------cccacaaggctccgcacgctc-tattctgtcccccca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30224334 391 + 173848474 CCAATAATTTACAGTAGGGAGCCCTAAGCCACAAAGAAAGGTGTCAGGGCATACCTGAGACCTGAAGTGAGAACATACCCTCCCTCAGGGTCACGAGTGAATCCTCTGAGGCCCCTCCTCCCTCAGACACTCCATCCAGTCATCAGAAGGTC----------CACACAGCACTAAGACCCAACCATCTCACTGTCTTCACCTCCATGGACAGAGCCCAGG---------------------TGACAGCCacccctgctcctcctccctcatctcccacagcctcagc-accatcgtctgccttgagtccaccaggactgagctcctcatgccctttccctgtttgtgtcggtcacactgggtcccccatatacccagcacttgcatc---------cccacaaggctccacatgctc-tattctgtcccccca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6026717 390 +   6154872 CCAATAATTTACAGTAGGGAGCACTAAGCCACAAAGAAAGGTGTCA-GGCAGACCTGAGACCTGAAGTGAGAACATACCCTCCCTCAGGGTCACGAGTGAATCCTCTAAGACCCCTCCTCCCTCAGACACTCCATCCAGTCATCAGAAGGTC----------CACACAGCACTAAGACCCAACCACCTCACTGTCCTCACCGCCATGGACAGAGCCCAGG---------------------TGACAGCCacccctgctcctcctccctcatctcccacagcctcagc-accgtcgtctgcctcgagtccaccaggactgagctcctcatgccctttccctgtttgtgtcagtcacactgggtcccccacatacccagcacttgcatc---------cccacaaggctccgcacgctc-tattctgtcccccca
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74708230 383 + 122973662 TAAATAATTCACAGTAGGGAGCCCTAAGCCACAAAGAAAGGTGTCAGGGAAGACCTGAGACCTGGAGTAAACTCACACCCTCCCTCAGGGTCCCGAGTGAATCCTCTCAGACCCCTCCTCCCTCAGACACTCCA-CAAGTCATCAGAAGGCC----------CACACAGCACTGAGACCCAGTCACCTCACTGTCCTCACTGCCATGGACAGAGACCAGG---------------------TGACAGCCACCCCTGCTCCTCCTCCCTCATCTCCCACAGAGTCA---------GTCCACAAGgaggtcaccaggactgagctcctcgtgccatttccctgtttgtgtcagtcacactggatcccccaaacaccctgcactcacatc---------cccacaaggctctgcacactcttattctgtccccata
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          85095 389 +    243043 CAAATAATTTATAGTACGGAGCCCTAAGCCAGAAAGAAAGGTGTCAGGGCAGACCTGGGACCTGGAGCGAGCACA--CCCTCCCTCAGGGTCACGAATGAATCCTCTAAGACCCCTCCTCCCTCAGACACTCCATCCA-TCACCAGAAGGTC----------CACACAGCACTAAGACCCAACCACCTCACCATCCTCACCTCCATGGACAGAGCCCAGG---------------------TGAGAGCCacccctgctcctcctccctcttcaaccacagcctcagc-accaccgtctgcctcgagtccaccaggactgagctcctcacgccctttccctgtttgtgtcagtcacagtgggtcccccacattccctacacttgcatc---------cccacaaggctccgcacactcctattctgtccccaca
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29145827 401 -  71996105 CCAATAATTTACAGTAGGGAGCCCTAAGCCACAAAGAGAGGTGTCAGGGCAGACCTGAGACCTGGAGGGAGCACATCCCCTCCCTCAGGGTCATGAGTGAATCTTCTAAGCCTGCTCCTCCATCAGATACTCCATCCAGTCATCAGGAGGTCAAGAAAAGTTCCCACAGCACTAAGACCCAACCACCTCACTGTCCTCATCTCCATGGACAGAGCCCAGG---------------------TGAGAGCCacccctgctcctcctccctcgtctcccacagcctcagc-accaccgtctgcctcgagtccaccaggactgagctcctcatgtcatttccctgtctgtgtcagtcacactgggtcccccacataccctgtactcacatc---------cccacaaggctctgcacacccctattctgtctcccc-
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          60111 391 -    735854 CCAATAATTCACAGTAGGGAGCCCTAAGCCAGAAAGAAAGGTGTCAGGGCAGACCTGGGACCTGGAATGAAGACACACCCTCCCTCAGGGTCATGAATGAATCCTCTAAGACCCCTCCTCCCTCAGACACTCCATCCA-TCATCAGAAGATC----------CACACAGCACTAAGACCCAACCACCTCACTGTCTTCACCTCCATGGACAGAGCCCAGG---------------------TGAGAGCCACCCctgcccatcctccctcatctcccatagcctcagc-atcatcgtctgcctcgagtccaccaggactgagctcctcatgccctttccctgtttgtgtcagtcacactgggtctcctacattccctgcacttgcatc---------cccacaaggctccacacactcctattctgtccccaca
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         339891 397 -   1771730 CCAGTAATTTACATTAGGGAGCCCTAAGCCACAAAGAACGGCATCAGAGCAGACCTGAGATCTGGAGTGAGCACAC-CCCTCCCTCAAGGTCATGAGTGAATCCTCtaagacccctcctccctcagacactccatccagtcatcaggaggcc----------cacacagcagtgagacccaaccacccctccatcctcacctccatggacagagcccagg---------------------tgc-agccgcccctgctcctccaccctcatctcccacagcctcagcaaccaatgtcagcctcaagtcgatgtggactgagctcattatggcctttccctgtttgtgtcactcacgctgggtcccttcaatactctgcatttgcatccccacaaggcccacaaggctctgcacacccctattctgtccct---
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         420923 420 -    457564 CCAGTAATTTACATTAGGAAGCCCTAAGCCACAAAGAAGAGCATCAGAGCAGACCTGAGATCTGGAGTGAGCGCAC-CCCTCCCTCAGGGTCATGAGTGAATCCTCTAAGACCCCTCCTccctcaaacactccatccagtcatcaggaggtc----------cacacagcactgagacccaaccacccctccctcctcacctccatggacagagcccaggaaattcagctgctcctgctcctga-atcctcccctgctcctcctccctcatctcccacagcctcagc-accattgtcagccttgagtccaccaggaatgagctcattatgacctttccctgtttgtgtcactcatgctgggtccctccaatacactgcattcacatctccacaaggcccacaaggctctgcacacccctattctgtccctcca
i aotNan1.NW_018509740v1       I 17 I 166
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547  26 +    231697 I
e rheMac8.chr4                 30228725 31644 + 172585720 I

a score=12117.000000
s hg38.chr6_GL000254v2_alt      1028439 6 +   4827813 ccatgt
s panTro5.chr6                 29990983 6 + 175400573 ccatgt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30224725 6 + 173848474 ccatgt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6027107 6 +   6154872 ccatgt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74708613 6 + 122973662 ccatgt
i nomLeu3.chr1a                C 0 C 0
s macNem1.NW_012013156v1          85484 6 +    243043 ccatgt
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          60502 6 -    735854 gcatgt
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         340288 6 -   1771730 ccattc
i cebCap1.NW_016107755v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         421343 166 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e chlSab2.chr17                29146228 0 -  71996105 C
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e macFas5.chr4_KE145577_random    90547 26 +    231697 I
e rheMac8.chr4                 30228725 31644 + 172585720 I

a score=234239.000000
s hg38.chr6_GL000254v2_alt      1028445 77 +   4827813 cccctacctaactccagaaatcttccctctgtactccctggaatcctcagtccatgatcagcaaaacctcctcattc
s panTro5.chr6                 29990989 77 + 175400573 cccctacctaactccagaaatcttccctctgtactccctggaatcctcagtccatgatcagcaaaacctcctcattc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30224731 77 + 173848474 cccctacctaactccagaaatcttccctctgtactccctggaatcctcagtccatgatcagcaaaacctcctcattc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6027113 77 +   6154872 cccctacctaactccagaaatcttccctctgtactccttggaatcctcagtccatgatcagcaaaacctcctcattc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74708619 74 + 122973662 cccctacctaactccagaaatcttctcactgcaccccctagaatccacagaccatgatcagcaaaa---tctcattc
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90573 76 +    231697 Cccctaccaaactccagaaatcttcccactgcaccccgtggaatccaca-tccacgatcagcaaaacctccttattc
i macFas5.chr4_KE145577_random I 26 C 0
s macNem1.NW_012013156v1          85490 77 +    243043 cccctacgtaactccagaaatcttcccactgcaccacttggaatccacagtccacgatcagcaaaacctcctcattc
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29146228 77 -  71996105 cacctccccagccacagaaatctttccagtgtaccccatggcactctcagtccacaatcagcaaaacctccacacct
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          60508 77 -    735854 cccctacctaactccagaaatcttcccactgcaccacttggaatccacagtccacgatcagcaaaaccttctcatct
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         340294 77 -   1771730 cctctctcgaactccagaaatcttctcactgtgccccctggaattatcagcccatgatcggctaaacctttacagac
i cebCap1.NW_016107755v1       C 0 I 53
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         421343 166 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30228725 31644 + 172585720 I

a score=182952.000000
s hg38.chr6_GL000254v2_alt      1028522 71 +   4827813 tctctcaggatgctccctcacctcgaagctctagcaggaacc-agg-tcttcctgaggatgtgacccactctg
s panTro5.chr6                 29991066 71 + 175400573 tctctcaggatgctccctcacctcgaagctctagcaggaacc-agg-tcttcctgaggatgtgacccgctctg
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30224808 71 + 173848474 tctctcaggatgctccctcacctcgaagctctagcaggaacc-agg-tcttcctgaggatgtgacccgctctg
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6027190 71 +   6154872 tctctcaggatgctccctcacctcgaagctctagcaggaacc-agg-tcttcctgaggatgtgacccgctctg
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74708693 72 + 122973662 tctctcaggatgtttcctcacctccaagctctagcaagaatc-tggctcttcctgagaatgtgaccccctctg
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90649 71 +    231697 tttctcaggatgttccatcaccttgaagctctagcaggaacc-agg-tcttcctgaggatgtggccccctctg
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          85567 71 +    243043 -ttctcaggatgttccctcacctcaaagctctagcaggaacctggg-ccttcctgaggacatgaccccctctg
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29146305 72 -  71996105 tctctcaggatattcctgcacctcgcagctccagcagcaacctgag-tctccctgaggacgtgaccccctccg
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          60585 70 -    735854 tctctcaggatattccctcaccttgaagctctagcaggaa-gtggg-tcttcctga-gatgtgaccccttctg
i manLeu1.NW_012107142v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         421343 166 -    457564 I
e cebCap1.NW_016107755v1         340371 53 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30228725 31644 + 172585720 I

a score=99092.000000
s hg38.chr6_GL000254v2_alt      1028593 32 +   4827813 aagttcccctacatgggggagttt-cccagcaa
s panTro5.chr6                 29991137 32 + 175400573 aagttcccctacatgggggagttt-cccagcaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30224879 32 + 173848474 aagttcccctacatgggggagttt-cccagcaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6027261 32 +   6154872 aagttcccctacatgggggagttt-cccagcaa
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74708765 32 + 122973662 aagttctgccacatgggggagttt-cccaggaa
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90720 32 +    231697 aagttcatccgtatggggaagttt-cccaggaa
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          85638 32 +    243043 aagttcctccatatgggggagttt-cccaggaa
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29146377 33 -  71996105 aagtcctcccacatcggggcgtttccccaggga
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          60655 32 -    735854 aagttccctcacatgggggagttt-cccaggaa
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         340424 33 -   1771730 aagtcttcccacatgcgggagtttccccaggaa
i cebCap1.NW_016107755v1       I 53 I 1
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         421343 166 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30228725 31644 + 172585720 I

a score=1838839.000000
s hg38.chr6_GL000254v2_alt      1028625 442 +   4827813 cttgtacccctgggttcagaggtgaggtggg------gtccttgctcttcactgtggttctcagacctttctgcctccctcctccctaaaacccctaagctgtcaacagactaaggccccgctcccctcattgtagccattccctgtgggccccaagccattcctgtcaatcctaactcttgtagctcctagatcactgtcaccctctccagcagtgctgtctccttgattctttctgacttcaacatATGCAGAtgtgctgggctgagtactagtccccaaagagatccagtcttagtccttggagtcggtgaacaggttgcattgcatggcaaaagggacattactcatgtaatgaagataaaagaccttaaagtagggagataatcctggactctctgtgtgggcccgatcaaatcacatgagccattaaaaggagagaatctgc
s panTro5.chr6                 29991169 442 + 175400573 cttgtacccctgggttcagaggtgaggtggg------gtccttgctcttcactgtggttctcagacctttctgcctccctcctccctaaaacccctaagctgtcatcagactaaggccccgctccccacattgtagccattccctgtgggccccaagccattcctgtcaatcctgactcttgtagctcctagatcactgtcaccctctccagcagtgctgtctccttgattctttctgacttcaacatATGCAGAtgtgctgggctgagtactagtccccaaagagatccagtcttagtccttggatttggtgaacaggttgcattgcatggcaaaagggacattactcatgtaatgaagataaaggaccttaaagtagggagataatcccggactctctgtgtgggcccgatcaaatcacatgagccattaaaaggagagaatctgc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30224911 442 + 173848474 cttgtacccctgggttcagaggtgaggtggg------gtccttgctcttcactgtggttctcagacctttctgcctccctcctccctaaaacccctaagctgtcatcagactaaggccccgctccccacattgtagccattccctgtgggccccaagccattcctgtcaatcctgactcttgtagctcctagatcactgtcaccctctccagcagtgctgtctccttgattctttctgacttcaacatATGCAGAtgtgctgggctgagtactagtccccaaagagatccagtcttagtccttggagtcggtgaacaggttgcattgcatggcaaaagggacattactcatgtaatgaagataaaggaccttaaagtagggagataatcccggactctctgtgtgggcccgatcaaatcacatgagccattaaaaggagagaatctgc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6027293 442 +   6154872 cttgtacccctggtttcagaggtgagctggg------gtccttgctcttcactgtggttctcagacctttctgcctccctcctccctaaaacccctaagctgtcgtcagactaaggccccgctcccctcattgtagccattccctgtgggccccaagccattcctgtcaatcctgactcttgtagctcctagatcactgtcaccctctccagcagtgctgtctccttgattctttctgacttcaacatATGCAGAtgtgctgggctgagtactagtccccaaagagatccagtcttagtccttggagttggtgaacaggttgcattgcatggcaaaagggacattactcatgtaatgaagataaaggaccttaaagtagggagataatcccagactctctgtgtgggcccgatcaaatcacatgagccattaaaaggagagaatctgc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74708797 442 + 122973662 cttgtacccctgggatcagaggtgaggtggg------gtccttgctcctcactgtggttcttagacatttctgcctccctcttccctaaaacccctagggtgtcatcagactagggccctattgccctcattgtagccattccctgtgggccccaggccgttcctgtcaatcctgactcttgtagctcctggatcaccgtcagcctcttcagcagtgctgtctcctggattctttgtgactttgacatATGCAGAtgtggtgggctgagtactagtccccaaagagatccagtcttagcccttggaacctgtgaacaggttgcattacatggcaaaagggaccttactcatgtaatgaagataaaggactttaaaatagggagattatcctggactctctgtgtgggcccgatcaaatcacatgagccattaaaagtagaggatctgc
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    90752 441 +    231697 cttgtacccctgggttcagagctgaggtggg------gtccttgctcctcactgtggttctgagacctttctgcctccttcctccctaaaacccctaagctgtcatcagactagggccccattcccctcattgtggtcattccctgtgggccccaggccgttcctgtcaatcctgactcttgtagctcctggatcaccatcaccctcttcagcagggctgtctccttaattctttgtgacttcgacatatgcagatatggtgggctgagtactggtccccaaagaggtccagtctaagtccttggaa-ctgtgaacaggttgcattacatggcaaaagtgtcattactcatgtaatgaagataaaggactttaaaatagggagattatcctagactttctgtgtgggctcaatcaaatcacatgagccattaaaagtagagaatctgc
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          85670 441 +    243043 cttgtacccctggcttcagagatgaggtggg------gtccttgctcctcactgtggttctcagacctttctgcctccctcctccctaaaacccctaagctgtcatcagacta-ggccccacttccctcactgtagccattctctgcgggccccaggccgttcctttcaatcctgactcttgtagctcctggatcaccatcaccatcttcagcaaggctgtctccttgattctttgtgaccttgacatatgcagatgtggcaggctgagtaatagtccccaaagaggtccagtcttagcccttggaacctgtgaacagcttgcattacatggcaaaagggacattactcatgtaatgaagataaaggactttaaaatagggagattatcctggactctctgtgtgggcccaatcaaatcacatgagccattaacagtagagaatctgc
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29146410 445 -  71996105 cttgtacccctgggttcagaggtgaggtggggttcttgttcttgctcctcactgtgggtctcagacctttctgccttccgcctccccaaaacccctaagctgtcatcagattaggccccca-tttcctcattgtaaccattccctgtaggccccagaccattcctctcaatcctgatgattgtagctgctgcttcactgtcaccctctccagcagggctgtctccttga--cttggtgacttcaacatacgcaGAtgtgctgggctgagtaatggtccccaaaggtgtccagtcttaatccttggaagctgtgatcaggttgcattgcatggcaaaaagtacattactcatgtaatgaagattaaggaccttaaaatagggagactatcctggactatctatgtgggcccaatcaaatcacatgagccattaaaagcagagaaactgc
i chlSab2.chr17                C 0 I 35951
s manLeu1.NW_012107142v1          60687 442 -    735854 cttgtactgccgggttcagaggtgaggtggg------gtccttgctcctcactgtggttctcagacctttctgcctccctcctccctaaaccccctaagctgtcatcagattagggccccacttccctcactgtagccattctctgtgggccccaggccattcctgtcaatcctgactcttgtagctcctggatcaccatcatcctctccagcagtgctgtctccttgattctttgtgactttgacatATGCAGAGgtcgtgggctgagtaccagtccccaaagaggtccagtcttagtccttggaacctgtgaacaagttgcattacatggcaaaagggatattactcatataatgaagataaaggaccttgaagtagggagattatcctggactctctgtgtgggcccaatcaaatcacatgagccattaaaagtagagaatctgc
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         340458 431 -   1771730 cctgtaac-ctgggcccagagctatggtggg------gtccttactcttcactgtggttctcagacctttctgcttccctgctccctaaaacccctaagctgttatcag-ttatggtcccactcccctcactgcagccattccctgtgggtcccaggccgttactctcaatcctgactcttgtagctcctggttcactgtcaccccctccagcagggctctctccttgatccatggtgacttcaacatATGCAGAtgtgatgggctgagtgatggtccccaaagatgtccaatctcagctcctgggacttatgaacaggttgcattacatgaaaaaaggaacattattcatgtagtgaagattaaggaccttaaaatagggagattatcc-agactgtctgtgtgggcccaatcaaatctcatgagccattacacg--------ctgc
i cebCap1.NW_016107755v1       I 1 C 0
s aotNan1.NW_018509740v1         421509 432 -    457564 cttgtacc-ctgggcctagaggtagggtggg------gtccttactcttcactgtggttttcagaactttctgcctccctcctccctaaaacccctaagctgtcatcagtttatggttccattcccctcactgcagccattccctgtgggtcctaggctgttaccctcaattctgactcttgtaactcctggttcactatctatccctccagcagggctctctccttgatccttggtgagttcaacatATGCAGAtgtgatgggctgagtgatggtccccaaagatgtccaatctcatctcctgggacttatgaacaggttgcattacatgaaaaaaggaacattattcatgtaatgaagattaaggaccttaaaatagggagattatcc-agactatctgtgtgggcccaatcaaatctcatgagccattaaaag--------ctgc
i aotNan1.NW_018509740v1       I 166 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30228725 31644 + 172585720 I

a score=345153.000000
s hg38.chr6_GL000254v2_alt      1029067 95 +   4827813 tctagatggagtcacatgctgcagagaaggaaggcagaggagacacagcaaa-ggggagatcagtggttccaagcaggagga-ttggatgtgcttta
s panTro5.chr6                 29991611 95 + 175400573 tctagatggagtcacatgctgcagagaaggaaggcagaggagacacagcaaa-ggggagatcagaggttccaagcaggagga-ttggatgtgcttta
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30225353 95 + 173848474 tctagatggagtcacatgctgcagagaaggaaggcagaggagacacagcaaa-ggggagatcagaggttccaagcaggagga-ttggatgtgcttta
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6027735 95 +   6154872 tctagatggagtcacatgctgcagagaaggaaggcagaggagacacagcaaa-ggggagatcagaggttccaagcaggagga-ttggatgtgcttta
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74709239 95 + 122973662 tttggatggagtcagatgctgcagaggaggaaggcaaaggagacacagcaaa-ggggagatcagaggttccaagcaggagga-ttggatgtgcttta
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    91193 96 +    231697 tctggatggagtcagatgctgcagaggaggaaggcagaggaggcacagcaaa-ggggagatcagaggttccaagcaggaggatttggatgtgcttta
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          86111 95 +    243043 tctggatggagtcagatgctgcagaggaggaagacaggggagacacagcaaa-ggggagatcagagtttccaagcaggagga-ttagatgtgcttta
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          61129 95 -    735854 tctggatggagtcagatgctgcagaggaggaag-cagaggagacacagcaaagggggagatcagaggttccaagcaggagga-ctggatgtgcttta
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         340889 95 -   1771730 tctggctggagtcagctgctgcagaggaggaaggcagaggagacacagcaca-gaggaggtcagagattccaagggggagga-ttggatgtgcctta
i cebCap1.NW_016107755v1       C 0 N 0
s aotNan1.NW_018509740v1         421941 95 -    457564 tctggctggactcagctgctgcagaggaggaaggcagaggagacacagcaca-gaggaggtcagagattccaagggggagta-ttagatgtgcctta
i aotNan1.NW_018509740v1       C 0 I 13
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e chlSab2.chr17                29146855 35951 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30228725 31644 + 172585720 I

a score=81913.000000
s hg38.chr6_GL000254v2_alt      1029162 42 +   4827813 ggc-------------ac-------------cagagagaagtctctaggatct-aagggtgctcccaaa-
s panTro5.chr6                 29991706 42 + 175400573 ggc-------------ac-------------cagagagaagtctctaggatct-aagggtgctcccaaa-
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30225448 42 + 173848474 ggc-------------ac-------------cagagagaagtctctaggatct-aagggtgctcccaaa-
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6027830 42 +   6154872 ggc-------------ac-------------cagagagaagtctctagtatct-aagggtgctcccaaa-
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74709334 55 + 122973662 ggcaccacacatgagtac-------------cagagagaagtctctaggagct-acggtggctcccagc-
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    91289 55 +    231697 ggc-------------accatatgtgagtagcagagagaagtctctaggagct-aagggtggctcccaa-
i macFas5.chr4_KE145577_random C 0 I 1
s macNem1.NW_012013156v1          86206 55 +    243043 ggc-------------accatacgtgagtggcagagagaagtctctaggagct-aagggtggttcccaa-
i macNem1.NW_012013156v1       C 0 I 1
s manLeu1.NW_012107142v1          61224 42 -    735854 ggc-------------ac-------------cagagagaagtctctaggatct-aagggtgctcccaaa-
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         455100 43 -   1771730 agg-------------ac-------------ccgagagagggctcgaggagtt-cgaggggtcagccatc
i cebCap1.NW_016107755v1       N 0 C 0
s aotNan1.NW_018509740v1         422049 44 -    457564 agg-------------ac-------------ttgagagagggctctacaagctaagagatgacagccagc
i aotNan1.NW_018509740v1       I 13 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e chlSab2.chr17                29146855 35951 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I
e rheMac8.chr4                 30228725 31644 + 172585720 I

a score=342431.000000
s hg38.chr6_GL000254v2_alt      1029204 84 +   4827813 aaggaagtgggaagctcagttctatctgc-aggaagtgaattcagacaagaacctgaataagcttggatgtggactcttccccag
s panTro5.chr6                 29991748 84 + 175400573 taggaagtgggaagctcagttctatctgc-aggaagtgaattcagacaagaacctgaataagcttggatgtggactcttccccag
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30225490 84 + 173848474 aaggaagtgggaagctcagttctatctgc-aggaagtgaattcagacaagaacctgaataagcttggatgtggactcttccccag
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6027872 84 +   6154872 aaggaagtgggaagctcagttctatctgc-aggaagtgaattcagacaagaacctgaataagcttggatgtggactcttccccag
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74709389 85 + 122973662 aagaaagtgggaagctctgttctatctgcaaggaggtgaattcaaacaagaacctgaatgagcttggatgtggactcttccccag
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30260369 85 + 172585720 aaggaagtggaaacctctgttctatctgcaaggaagtgaattcagacaagaacctgaatgagcttggaagtggattcttccccag
i rheMac8.chr4                 I 31644 C 0
s macFas5.chr4_KE145577_random    91345 85 +    231697 aagaaagtgggaagctctgttctatatgcaaggaggtgaatgcagacaagaacctgaatgagcttggatgtggattcttccccag
i macFas5.chr4_KE145577_random I 1 C 0
s macNem1.NW_012013156v1          86262 85 +    243043 aagaaagtgggaagctctgttcaatctgcaaggaggtgaatgcagacaagaacctgaatgagcttggatgtggattcttccccag
i macNem1.NW_012013156v1       I 1 C 0
s manLeu1.NW_012107142v1          61266 85 -    735854 aaggaagtgggaagctcagttctatctgcaaggaaatgagttcagacaagaacctgaatgagcttggatgagggtgcttccccag
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         455143 84 -   1771730 aaggaagtggggacctcagtcctcactgc-acaaagtgaattccgataagaacctgaataagcttggaagtgcagtcttccccag
i cebCap1.NW_016107755v1       C 0 N 0
s aotNan1.NW_018509740v1         422093 83 -    457564 -atgacatggggacctcagtcctctctgc-acaaagtgaaaccagataagaacctgaataagcttggaagtggattcttccccag
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e chlSab2.chr17                29146855 35951 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I

a score=1820.000000
s hg38.chr6_GL000254v2_alt      1029288 2 +   4827813 at
s panTro5.chr6                 29991832 2 + 175400573 at
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30225574 2 + 173848474 at
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6027956 2 +   6154872 at
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74709474 2 + 122973662 aa
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30260454 2 + 172585720 ag
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    91430 2 +    231697 aa
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          86347 2 +    243043 aa
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          61351 2 -    735854 aa
i manLeu1.NW_012107142v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         422176 0 -    457564 C
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e chlSab2.chr17                29146855 35951 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I

a score=93669.000000
s hg38.chr6_GL000254v2_alt      1029290 21 +   4827813 tctccaggaaggagcacagac
s panTro5.chr6                 29991834 21 + 175400573 tctccaggaaggagcacagac
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30225576 21 + 173848474 tctccaggaaggagcacagac
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6027958 21 +   6154872 tctccaggaaggagcacagac
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74709476 21 + 122973662 tctccaggaaggaagatagac
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30260456 21 + 172585720 tctcaaggaaagaacgcagac
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    91432 21 +    231697 tctccaggaaggaacacagac
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          86349 21 +    243043 tctccaggaaggaacacagac
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          61353 21 -    735854 tctccaggaaggaacacagac
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         575652 21 -   1771730 tctccatgaaggagcacagac
i cebCap1.NW_016107755v1       N 0 N 0
s aotNan1.NW_018509740v1         422176 21 -    457564 tctccgtgaaggaacacagac
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e chlSab2.chr17                29146855 35951 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I

a score=122601.000000
s hg38.chr6_GL000254v2_alt      1029311 35 +   4827813 ctgcccataccttgatcttagccccgtgagactgg-
s panTro5.chr6                 29991855 35 + 175400573 ctgcccataccttgatcttagccccgtgagactgg-
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30225597 35 + 173848474 cagcccataccttgatcttagccccgtgagactgg-
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6027979 35 +   6154872 ctgcccataccttgatcttagccccgtgagactgg-
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74709497 35 + 122973662 ctgcccataccttgatcttagccccatgagactgt-
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30260477 35 + 172585720 ctgcccgtacgttgatattagccctgtgagactgt-
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    91453 35 +    231697 ctgcccataacacgatcttagccctatgagactat-
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          86370 35 +    243043 ttgtccatactatgatcttagccccatgagactgt-
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012107142v1          61374 35 -    735854 ctgcccataccttgatcttagccgcatgagactgt-
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         341539 35 -   1771730 ctgcccatatcttgatcttac-cccgtgactctgtg
i cebCap1.NW_016107755v1       N 0 C 0
s aotNan1.NW_018509740v1         422197 36 -    457564 ctgcccatatcttgatttcactcctgtgagactgtg
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e chlSab2.chr17                29146855 35951 -  71996105 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I

a score=275151.000000
s hg38.chr6_GL000254v2_alt      1029346 54 +   4827813 gtggacttgcaacccacgcaactgtgacatgataattaggtgctgtttaaagct
s panTro5.chr6                 29991890 54 + 175400573 gtggacttgcaacccacacaactgtgacatgataattaggtgctgtttaaagct
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30225632 54 + 173848474 gtggacttgcaacccacacaactgtgacatgataattaggtgctgtttaaagct
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6028014 54 +   6154872 gtggacttgcaacccacacaactgtgacatgataattaggtgctgtttaaagct
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74709532 54 + 122973662 gtggacttgcatcccacaagactgtggcatgataattaggtgctgtttaaatct
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30260512 54 + 172585720 gtggacttgcaaccgacacgactgtgacatgataattaggtgctgtttaaagcc
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    91488 54 +    231697 gtagacttgcagcccacaggactgtggcatgataattaggtgctgtttaaagct
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          86405 54 +    243043 gtggacttacagcccacaggactgtgacatgataattaggtgctgtttaaagcc
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29182806 54 -  71996105 gtggtcttgcaaccgacacgactgtaacatgataattaggtgctgtttaaagcc
i chlSab2.chr17                I 35951 C 0
s manLeu1.NW_012107142v1          61409 54 -    735854 ggggacttgcagcccacaggactgtggcatgataattaggtgttgtttaaagct
i manLeu1.NW_012107142v1       C 0 I 5536
s cebCap1.NW_016107755v1         341574 54 -   1771730 ttggacttgcatcccacctggctgtgacatgataaacaggtgctgtttaaagcc
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         422233 54 -    457564 ttggatttgcaacccacatggttgtgacatgataaataggtgctgtttaaagcc
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e cerAty1.NW_012002711v1         696370 25331 +    766320 I

a score=505442.000000
s hg38.chr6_GL000254v2_alt      1029400 107 +   4827813 gcttggtttgtggtaatttt------tatg------gcagcaatagacacctatacaGcagagaagatgccctcactccct--ggcctctcagatcctggaactccttttcttcattacca
s panTro5.chr6                 29991944 107 + 175400573 gcttggtttgtggtaatttt------tatg------gcagcaatagacacctatacaGcagagacgatgccctcactccct--ggcctctcagatcctggaactccttttcttcattaccg
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30225686 107 + 173848474 gcttggtttgtggtaatttt------tatg------acagcaatagacacctatacaGcagagaagatgccctcactccct--ggcctctcagatcctggaactccttttcttcattaccg
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6028068 107 +   6154872 gcttagtttgtggtaatttt------tatg------gcagcaatagacacctatacaGcagagaagatgccctcactcctt--ggcctctcagatcctggaactccttttcttcattaccg
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74709586 107 + 122973662 gcttggtttgtggtaatttt------tatg------gcagcaatagaCACATGTACAGCAGAGAAGATGCCCTCGCTccct--ggcctctcagatcctggaactcctttccttcattacca
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30260566 112 + 172585720 acttggtttgtggtaatttttatggctatg------gcagcaatagacacccatacaGCAGAGAagatgccctctctccct--ggcctctcagatcctggaactcctct-cttcctgacct
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    91542 106 +    231697 gcttggtttgtggtaatttt------tatg------gcaacaatagacacctatacagcagagaagatgtccatgccccat--ggcctctcc-atcctggaactcctttccttcataacca
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          86459 107 +    243043 gcttggtttgtggtaatttt------tatg------gcagcaatagacacctatacagcagagaagatgtccatgctccac--ggcctctcaggtcctggaacccctttccttcataacca
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29182860 113 -  71996105 acttggtttgtggtaatttt------tatggctatagcagcaatagacacccatacaGCAGAGAAGATGCCCTCTCTccct--ggcctctcagatcctggaactcctctcttccctgacgt
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          66999 107 -    735854 gcttggtttgtggtaatttt------tatg------gcagcaatagacacctatacaGCAGAGAAGATGTCCGTGCTccat--ggcctctcaggtcctggaactcctttccttcataatca
i manLeu1.NW_012107142v1       I 5536 C 0
s cebCap1.NW_016107755v1         341628 107 -   1771730 ccagggcttgtgttaatttt------tatg------gcagcaattgacactcatacaGCAGAGCGgatgccctcatgccct--ggcctctcagaacccgggactcctctcttccatgacct
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         422287 109 -    457564 actgggtttgtgttaatttt------tatg------gcagcaattgaCACCCATACAGAAGagaggatgccctccttccctgaggcctctgagaacctgggactcctctcttacatgacct
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2857087 49284 -   3067355 T
e cerAty1.NW_012002711v1         696370 25331 +    766320 I

a score=4934426.000000
s hg38.chr6_GL000254v2_alt      1029507 906 +   4827813 tctcctctctctgccggaatctcaggaccttgtcctcccctaggcctcatcatggcaaagaaccccagcccttccacactctcaatctcacacttcccactctctggccatctttccactcatcccctTGCAGGGTAGCCACAGGCTCTGAAGACACTGATGCTATAA-TTTGATC-ATATGCTATAATGTAACATCAGTGAACCACTCATTGCATGTGTGCCTGCTTTCCAGGCATGGagtccattctgtagtacatctattccaataatttttccacccccttgaaattcccaatccagtgatgctgctatctattcc------ttctcccttagtgtttgttgtcctctcctccctcctc-------atccattttggattctgtagtaaataatttccatccctcccttgcctctccctttcgttgtcacacttgcctggcaaaactacacagctagtggattccacctcagcctacactgcacctgcccccataagctgcaggaggctggagagcagcacacagcatgctgactgttctctctacattcacga-cccaaacctcatggggagcccccaccatagccagcaa--------------------tcaccctctccctgcatggctcactctcagcctcctcctggcctgggtgactcttacataccttctctctgtcctcacacatccaatcttccttccccattcttacttccgctgatgatcttgcttcctacttcactgagaaaactgaacacatttagaagacaac-ttcacagattccaccaccgtctgctcatgcatttgcagctgcaccacatgtcaggcattttactacatgggggattgctgtgtgttaaccatcctgctcccagccagagccagttcctctgctggtgccctgaacatcatcccttctcatctactt-aaa-g
s panTro5.chr6                 29992051 906 + 175400573 tctcctctctctgccggaaactcaggaccttgtcctcccctaggcctcatcatggcaaagaaccccagcccttccacactctcaatctcacacttcccactctctgaccatctttccactcatcccctTGCAGGGTAGCCACAGGCTCTGAAGACACTGATGCTATCA-TTTGATC-ATATGCTATAATGTAACATCAGTGAACCACTCATTGCATGTGTGCCTGCTTTCCAGGCATGGagtccattctgtagtacatctattccaataatttttccacccccttgaaattcccaatccagtgatgctgctatctattcc------ttctccctcagtgtttgttgtcctctcctccctcctc-------acgcattttggattctgtagtaaataatttccatccctcccttgcctctccctttcgttgtcacacttgcctggcaaaactacacagctggtggattccacctcagcctacactgcacctgcccccatgagctgcaggaggctggagagcagcacacagcatgctgactgttctctctacattcacga-cccaaacttcatggggagcccccaccatagccagcaa--------------------tcaccctctccctgcatggctcactctcagcctcctcctggcctgggtgactcttacataccttctctctgtcttcacacatccagtcctccttccccattcttacttccgctgatgatcttgcttcctacttcactgagaaaactgaacacatttagaagacaac-ttcacagattccaccaccgtctgctcatgcatttgcagctgcatcacatgtcaggcattttactacatgggggattgctgtgtgttaaccatcctgctcccagccagagccagttcctctgctggcgccctgaacatcatcccttctcatctattt-aaa-g
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30225793 906 + 173848474 tctcctctctctgccggaaactcaggaccttgtcctcccctaggcctcatcatggcaaagaaccccagcccttccacactctcaatctcacacttcccactctctgaccatctttccactcatcccctTGCAGGGTAGCCACAGGCTCTGAAGACACTGATGCTATCA-TTTGATC-ATATGCTATAATGTAACATCAGTGAACCACTCATTGCATGTGTGCCTGCTTTCCAGGCATGGagtccattctgtagtacatctattccaataatttttccacccccttgaaattcccaatccagtgatgctgctatctattcc------ttctccctcagtgtttgttgtcctctcctccctcctc-------acccattttggattctgtagtaaataatttccatccctcccttgcctctccctttcgttgtcacacttgcctggcaaaactacacagctggtggattccacctcagcctacactgcacctgcccccatgagctgcaggaggctggagagcagcacacagcatgctgactgttctctctacattcacga-cccaaacttcatggggagcccccaccatagccagcaa--------------------tcaccctctccctgcatggctcactctcagcctcctcctggcctgggtgactcttacataccttctctctgtcttcacacatccaatcctccttccccattcttacttccgctgatgatcttgcttcctacttcactgagaaaactgaacacatttagaagacaac-ttcacagattccaccaccgtctgctcatgcatttgcagctgcaccacatatcaggcattttactacatgggggattgctgtgtgttaaccatcctgctcccagccagagccagttcctctgctggcgccctgaacatcatcccttctcatctactt-aaa-g
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6028175 906 +   6154872 tctcctctctctgccggaatctcaggaccttgtcctcccctaggtctcatcatggcaaagaaccccagcccttccacactctcaatctcacacttcccactctctgaccatctttccactcatcccctTGCAGGGTAGCCACAGGCTCTGAAGACACTGATACTATCA-TTTGATC-ATATGCTATAATGTAACATCAGTGAACCGCTCATTGCATGTGTGCCTGCTTTCCAGGCATGGagtccattctgtagcacatctattccaataatttttccacccccttgaaattcccaatccagtgatgctgctatctattcc------ttctccctcagtgtttgttgtcctctcctccctcctc-------acccattttggattctgtagtaaataatttccatccctcccttgcctctccctttcgttgtcacacttgcctggcaaaactacacagctggtggattccacctcagcctacactgcacctgcccccatgagctgcaggaggctggagagcagcacacagcatgctgactgttctctccacattcacga-cccagacttcatggggagcccccaccatagccagcaa--------------------tcaccctctccctgcatggctcactctcagcctcctcctggcctgggtgactcttacataccttctctctgtcctcacacatccaatcctccttccccattcttacttccgctgatgatcttgcttcctacttcactgagaaaactgaacacatttagaagacagc-ttcacagattccaccaccgtctgctcatgcatttgcagctgcaccacatgtcaggcattttactacatgggggattgctgtgtgttaaccatcctgctcccagccagagccagttcctctgctggcgccctgaacatcatcccttctcatctattt-aaa-g
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74709693 887 + 122973662 tctcctctctctgccggaatctcatgcccttcttatcccctaggcctcatcatggcaaagaaccccagcccttccatactttcaatttcacacttcccactctctgaccatctttccactcatccccttgcagggtagccacaggctctgaggacactaatactatta-ttttatc-atatgctgtgatgtaatatcagtgaaccattcattgcttatgtgcctgctttcca-gcatggagtccattctgtggtacatcaattccaacaatctcttcacccccttgggatt-ctagtccagtgaccctgccatatactcc------ctcgccctcagtgcttggattc-------acctcctc-------acccattttggattctgtggtaaataatttccatccctcccttgcctctcccttgcat--tcacacttgtctggcaaaactacacagctggtggattccacctctgcctacacggcacctgcgcccatgagctgca--------gagagcagcacacagcacacagactgctgtctctaccttcatga-cccaaacctcatggggagcccccaccatggccagcaa--------------------tcaccctctccctgcgtggctcaccctcagcctcctcctggcctgggtgactcttacacaccttctctctgtgctcacacatccaa-ccttcttcctcattcttacttcatctgatgaccttgcttcccacttcactgagagaactgaacaca-ttagaagacagctttcagagattccaccaccgtctgctcatgcatttgcagctgcaccacatgtcaggcattttaccacgtgggggattgctgtgtgttaaccatcctgctcccagccagagccagttcccctgctggcgccctgaacatcatcccttctcctctactt-aaagg
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30260678 896 + 172585720 tctcctctctctgcctgaatctcgtgcccttgtcatcccctaggcctcatcatgcccaagaaccccaacccttccatgctctcaatctcgcacttccccccttctggccatctttccactcat-cccatgcaaggtggccacaggctctgaggacacagatactatcatttttttc-atatgctgtgatataatatcagtg-actactcattgcctatgtgcctgcattccaggcttgaagtccgttctgcagtacatcaattccaacaatccttccaccccactgagattcccaatctagtgatcctgccatctactccctgttactcacccttggtgtcctctcct-------ccctcctt-------acccgttttgaattctatggtaaataatttctatccctcccttgcctctcccttgagttgtcacactcacctggcaaaactacacagctggtggattctacctctgcccacactgcacctgctccc-tgagctgca-------ggagagcaacacacagcacactgactgctctctgtaccttcacga-cccagacctcatggggagcccccaccacggccagcaa--------------------tcaccctctccctgcatggctcaccctcagcctcctccgggcctgggtgactcttacacaccttctctgtgtgctcacatatccaaccctccttccccattcttacatcggctgatgaccttggttcctacctcactgagaaaactgaacaca-ttagaagacaac-ttcccagattccaccactgtctgctcatgcatttgcggctgcatcacatgtcaggcattttaccacgtgggggactgttgtgggttaaccatcctgctcccagaaagagccagtccttcttctggtgccccaaacgtcatcccttctcatccactt-aaagg
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    91648 909 +    231697 tgtcctctctctgcctgaatctcatgcccttcttatccactaggtctcctcatggcaaagaaccccagcccttccatactctcaatttcacacttcccactctctgaccatctttcctctcat-cccTTGCAGGGTAGTCACAGGCTCTGAGGACACTGACACTATTA-TTTTATC-ATATACTGTGATGTAATATCAGTGAAACACTCATTGCTTATGTGCCTGctttccaggcgtggagtcccttgtgtagtatgttgattctaacaatctattcacccccttgagattcctagtcaagtgaccctgccatatactct------ctctccctcagtgcttggattc-------acctcccc-------actcattttgaagtctgtagtaaataatttccatccctcctttggctctcccttgcat--tcacacttgtttggcaaaactacgcagctggtggattccacctctgcctacactgcacctgcccccatgagctgca-------ggagagcagcacacagcacaccgactgctctctgtaccttcacga-cccaaacctcatggggagcccccaccacggccagcaatcaccctctccctgcatggctcaccctctccctgcatggctcaccctcagccccctctgggtctgggtgactcttacacaccttctctctgtgctcacacatccaaccctccttccccattcttacttcagctgatgaccttgcttcctacttcactgacaaaactgaacata-ttagaagacagc-ttcacagattccaccactgtctgttcatgcatttgcagctgcatcgcatgtcaggaatttttccacatgggagattgctgggtattaaccatcctgctcccagacagagccagttcctctgctggcgccctgaacatcatcccttctcatctactt-aaagg
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          86566 889 +    243043 tgtcctctctctgcct-aatctcatgctcttcttatcccctaggcttcctcatggcaaagaagcccagcccttccacactctcaatctcacacttcccactctctgaccatctttccactcat-cccttgcagggtagtcacaggctctgaggacactgatactatta-tcttatt-atatgctgtgatgcaatatcagtgaaacactcattgcttatgtgcctgctttccaggcgtggagtccattctgtagtacatcaattccaacaatccttccacccccttgggattcctagtccagtgatcctgccatatcctcc------ctctccctcagtgcttggattc-------accttctc-------acccattttggattctgtagtaaataatttccatacttcccttgcctctcccttgcattgtcacacttgcttggcaaaactacatagctggtggattccatcactgcctacactgcacctgccccc-tgagctgca-------ggagagcagcacacagcacactgactgttctctgtaccttcacga-cccaaacctcatggggaacccccaccatggccagcaa--------------------tcaccctctccctccatggctcaccctcagccacctccgggcctgggtgactcttacacaccttctctctgtgctcacatatccaaccctccttccccattcttacttcagctaatgaccttgcttcctacctcactgaaaaaactgaataca-ttagaagacaac-ttcccagattccaccactgtctactcatgcatttgcagctgcaccacatggcaagcatttttccacatgggggattgctgtgtgttaaccatcctgctcccagacacagccagtacatctgtgggtgccctgaacatcatctcctctcatctactt-aaagg
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29182973 896 -  71996105 tctcctctctctgcctgaatctcgtgcccttgtcatcccctaggcctcatcatgcccaagaaccccaacccttccatgctctcaatctcgcacttccccccgtctggccatcTTTCCATTCAT-CCCATGCAAGGTGGCCACAGGCTCTGAGGACACAGATACTATCA-TTTTTTTCATATGCTGTGATGTAATATCAGtg-actactcattgcctatgtgcctgcattccaggcttgaagtccgttctgcagtacatcaattcgaacaatccttccaccccactgagattcccaatctagtgatcctgccatctactcc------ctgttactca-cccttggtgtc-------ctctcctccctccttacctgttttgaattctatggtaaataatttctatccctcccttgcctctcccttgagttgtcacactcacctggcaaaactacacagttggtggattctacctctgcctacactgcacctgctccc-tgagctgca-------ggagagcaacacacagcatactgactgctctctgtaccttcacga-cccagacctcatggggagcccccaccacggccagcaa--------------------tcaccctctccctgcatggcttaccctcagcctcctccgggcctgggtgacttgtacacaccttctctgtgtgctcacatatccaattctccttccccattcttacatcggctgatgaccttggttcctacctcactgagaaaactgaacaca-ttagaagacagc-ttcccagattccaccactgtctgctcatgcatttgcggctgcatcacatgccaggcattttaccacgtgggggactgttgtgggttaaccatcctgctcccagaaagagccagtccctcttctggtgccccaaaagtcatcccttctcatccactt-aaagg
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          67106 892 -    735854 tgtcctctctctgcctgaatctcatgcccttcttatcccctaggcttcttcatggcaaagaagcccagcccttccacactctcaatttcacacttcccactctctgaccatcTTTCCACTCAT-CCTTTGCAGGGTAGCCACAGGCTCTGAGGACACTGATACTATTA-TTTTATT-ATATGCTGTGATGTAATATCAGTGAAACACTCATTGCTCATGTGCCTGCTTTCCAGGTGTGGagtccattctgtagtacatcaattccagcaattcttccacccccttgggattcctagtccagtgatcctgccatatcctcc------ctctccctcagtgcttggattc-------aacttctc-------acccattttggattctgtagtaaataatttccatccttcccttgcctctcccttgcattgtcacacttgcttggcaaaactacataggtggtggattccacctctgtctacactacacctgcccctatgagctgca-------ggagagcagcacacagcacactgactgctctctgtaccttcagga-cccaaacctcatggggagcccccaccacagccagcaa--------------------tcactctctccctgcatggctcaccctcagcctcctcctggcctgggtgactcttacacatcttctctctgtgctcacatatccaaccctccttccccattctttcttcagctgatgaccttgcttcctacttcactgacaaaactgaataca-ttagaagacagc-ttcacagattccaccaccgtctgctcatgcatttgcagctgcaccacatggcaggcatttttccacatggcggactgttgggtgttaaccattctgctcccaaccagagtcagttcatctgcaggtgtgctgaacatcatctcttctcatctacttaaaagg
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2807803 900 -   3067355 tctcctttctttgtctgaatctcatgcccttgtcatcccctaggcctcatgatgggcaagatccccagcccttccatattctcaa--tcatactttccactctctgatcatctttccactcataccctttCAGGGTGTCTACAGGCTCTGAGGATACTTATACTATCA-TTTTATC-ACATACTGTAATGTAGTATCAGTGAACCACTCATTACATATGTG-CTGctttccagacttgccgtctaccctatagtacattaattccaataatccttccacccgcctgggattcccaatccagtgatcctgccatctactccctgtccctcacccttggtgtcctattct-------cccttctc-------acccattttgaattctgtggtaaataatttccatccttcctttgcctctcccttgcattgtcacatttgcttggcaaagctacacagctggtggattccacctctgcctacactgcacctgcccccatgagctgcaggaggctggagagcagcacacagcacactgactgctctctctaacttcatga-cctaaacctcatggggaccccctaccacggccagcaa--------------------tcaccctctccacacatggctcaccctcagcctcctcctggcctgggtgactcttacactccttctc--tgtgctcacacatccaaccctccttccccattcctacttcagctgattatcttgcttcctacttcattgagaaaactgaacaca-ttagaagataac-ttcacagattccaccaccatctgctcatgcatttacagctgtaccacatgtcaggccttttaccacgtggataattgttgtgggttaaccatcctgctcccagccagagccagttccgttgctggtgccccaaacctcatccctttttgtttactt-gaaag
i colAng1.NW_012115566v1       T 49284 C 0
s cebCap1.NW_016107755v1         341735 896 -   1771730 tctcctctccctgcctgggccccacacccttgtcacctcctcagtcttgtcatagccaaggaccccagcccttccatactctccatctcacacctcccactctctgaccatctttccactcatccccttgcaaggtgggcacaggctctgaggacacag-----atca-ttttatc-gtatgctgtgatgtaatatcattgaaccacacattacatatgtgcctgctttccaggcttagagtccaccctgtaatatatcagttccaacaatccttccacccccctgggattcccagtctagggattctgccatctactca------ctgttcctca-cccttggcgccctctcctccctactc-------accca-tttgaattttatgataaataatttccac-ccttccttgcctctcccttgtgttgtcacattca-ctggcaaaactacatagctggtgagttccacctctgcctacgctgcacctg-ccccatgagctgcaggaggctggggagcagcacacatcatgcaaactgttctctttaaatttaggattccaaaccttatggggagccctcatcatgcccagcaa--------------------tcaccctctccctgcatggctcaccctcagcctcc-actgtcctgggtgatccttagaaaccttctctttgtgctcacacatccaacctttctttcccattcttacctcaactgatgacattgctttctacttcggtaagaaaactgaaccca-gtagaaggcaactttcacagattccaccactgcctgctcatgcatttgcagctgtactgcatgtcaggcattttattatgtgggggactgttgtgggtgaaccattctgttctcagccagggccagtccctcttctggtgccccaaatgtcatcccttcttatctactt-aaag-
i cebCap1.NW_016107755v1       C 0 I 1
s aotNan1.NW_018509740v1         422396 898 -    457564 tctcctctctctgcctgggccccacacctctgtcaccacctcagtcttgtcatagccagtgaccccagctcttccatactctccatctcacacctcccactctctgaccatctttccactcatcccctTGCAGGGTGGACACAGGCTCTGAGGACACAG-----ATCA-TTTTATC-GTATGCTGTGATGTAGTATCAGTGAACCACACATTGCGTATGTTCCTGCTTTCCAGGCTTGAagttcactctgtagtatatcagttacaaccatccttccaccccgccaggattcccaatctagtgatcctgccatctacaca------gtgcccctca-cccttggtgttctctcctccctcctc-------acccattttgaattctatggtaaataatttccatgtctcccttgcctctcccttgtgttgtcacactcacctgttaaaactacacagctggtgagctccagctctgcctacgctgcacctgcccccatgagctgcaggaggctggagagcagcacacagcacgtggagtgttctctttaaatataggattccaaacttcatggggagcctccaccatggccagcaa--------------------tcgccccctcccggcattcctcaccctcagcctc---ctgtcctgggtgattcttagacaccttctctttgtgctcacacatccaacctttctttcccatgcttacttcaactgatgatattgcttcgtacttcggtaagaaaactgaaccca-gtataaggcaactttcacagatcccaccactgtctgctcatgcatttgcagctgcaccacatgtcaggcattttattatgtgggggactgttgtgggtgaagcattctgttctcagccagagccagtccctcttctggtgccccaaatgtcatcccttctcatctactt-aaag-
i aotNan1.NW_018509740v1       C 0 I 64
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I

a score=114430.000000
s hg38.chr6_GL000254v2_alt      1030413 29 +   4827813 tgttagctcatcaattaatacc--ttttttt-
s panTro5.chr6                 29992957 29 + 175400573 tgttagttcatcaattaatacc--ttttttc-
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30226699 28 + 173848474 tgttagttcatcaattaatatc--tttttt--
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6029081 29 +   6154872 tgttagttcatcaattaatacc--ttttttt-
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74710580 27 + 122973662 tgttagttcatcaattaatacc--ttttt---
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30261574 28 + 172585720 tgtcagttcatccattaatacc--tttttt--
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    92557 27 +    231697 tgttagttcatcaattaatacc---ttttt--
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          87455 27 +    243043 tgttagttcatcaattaatacc---ttttt--
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29183869 30 -  71996105 tgtcagttcatccattaatacctttttttt--
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          67998 28 -    735854 tgttagttcatcaagtaatacc--ttttat--
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2808703 28 -   3067355 tgtcagttcatccattgatacc--tttttt--
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         342632 29 -   1771730 tgtcagttcatcagttaatacc--ttgttt-t
i cebCap1.NW_016107755v1       I 1 I 26
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         423294 64 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I

a score=118802.000000
s hg38.chr6_GL000254v2_alt      1030442 31 +   4827813 tccctctattgtcatcccttttccttttatt
s panTro5.chr6                 29992986 31 + 175400573 tctctctatcgtcatcccttttcctcttatt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30226727 31 + 173848474 tctctctatcgtcatcccttttcctcttatt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6029110 31 +   6154872 tctctctatcgtcatcccttttcctcttatt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74710607 31 + 122973662 cccctctatcatcatcccttttcctcttact
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30261602 31 + 172585720 tctctttatcatccacctttttcctctctcc
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    92584 31 +    231697 tccctctatcctcatcccttttcctcttact
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          87482 31 +    243043 tccctccatcatcatcccttttcctcttact
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29183899 31 -  71996105 tctctttatcatcaacctttttcctctctcc
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          68026 31 -    735854 tccatctatcatcatcccttttcctcttact
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2808731 31 -   3067355 ttcttttatcatcatcccttttcctctcact
i colAng1.NW_012115566v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         423294 64 -    457564 I
e cebCap1.NW_016107755v1         342661 26 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I

a score=6600.000000
s hg38.chr6_GL000254v2_alt      1030473 1 +   4827813 c
s panTro5.chr6                 29993017 1 + 175400573 c
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30226758 1 + 173848474 c
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6029141 1 +   6154872 c
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74710638 1 + 122973662 c
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30261633 1 + 172585720 c
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    92615 1 +    231697 c
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          87513 1 +    243043 c
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29183930 1 -  71996105 c
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          68057 1 -    735854 C
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2808762 1 -   3067355 c
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         342687 1 -   1771730 c
i cebCap1.NW_016107755v1       I 26 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         423294 64 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I

a score=1256498.000000
s hg38.chr6_GL000254v2_alt      1030474 244 +   4827813 cagtggatcattgtggcactcatgaggatgcacatcccaggccctcaggtagaggaagaataattgatgat-gtcccagctgtcgcagcctgaaatctattgtcacgtttgatctgagaccacacctg-ccccagctttttccaaccaatgattgaccaaagcagg---aaaactaaggcaagaatattcctactctgaaggctggctgagg-ctccaggactccctgccatccctactgagcttccctt
s panTro5.chr6                 29993018 244 + 175400573 cagtggatcaCtgtggcactcatgaggatgcacatcccaggccctcaggtagaggaagaataattgatgat-gtcccagctgtcgcagcctgaaatctattgtcacgtttgatctgagaccacacctg-ccccagctttttccaaccaatgattgaccaaagcagg---aaaactaaggcaagaatattcctactgtgaaggctggctgagg-ctccaggactccctgccacccctactgagcttccctt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30226759 244 + 173848474 cagtggatcattgtggcactcatgaggatgcatatcccaggccctcaggtagaggaagaataattgatgat-gtcccagctgtcgcagcctgaaatctattgtcacgtttgatctgagaccacacctg-ccccagctttttccaaccaatgattgaccaaagcagg---aaaactaaggcaagaatattcctactctgaaggctggctgagg-ctccaggactccctgccacccctactgagcttccctt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6029142 244 +   6154872 cagtggatcaCtgtggcactcatgaggatgcacatcccaggccctcaggtagaggaagaataattgatgat-gtcccagctgtcgcagcctgaaatctattgtcacgtttgatctgagaccacacctg-ccccagctttttccaaccaatgattgaccgaagcagg---gaaactaaagcaagaatattcctactctgaaggctgactgagg-ctccaggactccctgccacccctactgagcttccctt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74710639 238 + 122973662 cagtggatcattgtggcactcatgaggatacacataccaggccatcaggtagaggaagaataattgatgat-gccccagctgtcacagcctgaagtctattgtcacgtttgttctgagaacacacctg-cctcggctttttcc------tgattaaggaaagcagg---gaagctaaggcaggaatatttctactctgaaggctgactgagg-ctccagagctccctgccacacttgctgaattttcctt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30261634 249 + 172585720 cactggatcaCtgtggcagtcgtgagaatgcacatcccagcccctcagctagaggaagcagaattggtgatggccccaacttttgaatcctgaaacctattgccacatttgctctgagaccacacctgccccctgtcttttccagtcaatgattgaggaaagcagggcagaaattaaggcagaaacatttcttctctgaaggctgcctgaag-ctccagagctccctgccaccctcactgaacttccctt
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    92616 238 +    231697 cagtgcatcattgtggcagtcatgaggatgcacatcccaggccctcaggtagacgaagaataattgatgat-gcctctgctgtcacagcctgaaatctattgtcacttttgctccgagaccacacctg-actcagctttttcc------tggttgaggaaagcagg---gaaactgaggcaggaatatttctattctgaaggctgactgagg-ctccaggggtccctgctacttttaccgaacttacctt
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          87514 224 +    243043 tagtggatcattgtggcagtcatgaggatgcacatcccaggccctcaggtagaggaagaataattgatgat-gctccagctgttgcagcctgaaatctattgtcatgtttgctctgagaccacacctg-ccttggctttttcc------tgattgagga-----------------aggcaggaatatttctattctgaaggctgactgagg-ctccagggctccctgccacctttaccgaatttccctt
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29183931 249 -  71996105 cactggatcaCtgtggcagtcatgagaatgcacatcccagcccctcagctagaggaagcagaattggcgatggccccaacttttgaatcctgaaacctattgccacatttgctctgagaccacacctgccccctgtcttttccagtcaatgattgaggaaagcaggccagaaactaaggcagaaacatttcttctctgaaggctgcccgaag-ctccagagctccctgccaccctcactgaacttccctt
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          68058 236 -    735854 CAGTGTTTCATtgtggcagtcatgaggatgcacatcccaggccctcaggtagaggaagaataattgatgat-gctctagctgtctcagcctgaaatctattgtcacgtttactctgagaccacacctG--TCTTGGCTTTTTC-----CTGATTGAGGAAAGCAGT---GAAAC--AGGCAGGAATATTTctactctgaaggctgactgagg-ctccagggctccctgccacacttaccgaattttcctt
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2808763 243 -   3067355 tactggatca-tgtagcagtgacaagaatgcgtatcccaggctctcagctagaggaagcacaattgatcat-gacccagctgttgcagcctggaatctattgccacatttgct--gagactatgcctaccatgggcttcttccagccaatgattgaggaaagcagg---gaaactaaggcaggaacatttctcctctgaaggctgactgaggcctccagggattccagatgccgttactgaacttccctt
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         342688 248 -   1771730 tactggatcatCgtggcagtcatgagaatgcgcatcccagccccacagctagaggaagcgtaactggtgatagccccagctcttgaagcctgaaatctattgccacatttgctctgagaccacacctgcccctggtcttttccagccaatgattgaggaaagcggggcagaaactaaggcaggaacatttttcctctgaaggctgactgaag-ctccggggctccct-ccacccttactgaacttccctt
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         423358 249 -    457564 cactggatcattgtggcaatcatgagaatgcacatcgcagcccatcaggtagaggaagtataacaggtgatggccccagctcttgaagcctgaaatctattgccacatttgctctgagaccacacctgccccaggtcttttccagccaatgattgaggaaagcagggcagaaactaaggcaggaacatttctcctctgaaggctgactgaag-ctccagggctccctgccacacttactgaacttccctt
i aotNan1.NW_018509740v1       I 64 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002711v1         696370 25331 +    766320 I

a score=1122981.000000
s hg38.chr6_GL000254v2_alt      1030718 177 +   4827813 agcctacacagggtctaggatgcttccagctgaccttcctgccctctctccttcactgggact-----cagagttgcattgtgatctgatggcttttccagca-tttctgtctctatcctgattttctctcacaacta-tttcccctaataaatccttacacatttaatactgtattggggtct
s panTro5.chr6                 29993262 177 + 175400573 agcctacacagggtctaggatgcttccagctgaccttcctgccctctctccttcactgggact-----cagagttgcattgtgatctgatggcttttccagca-tttctgtctctatcctgattttctctcacaacta-tttcccctaataaatccttacacatttaatactgtattggggtct
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30227003 177 + 173848474 agcctacacagggtctaggatgcttccagctgaccttcctgccctctctccttcactgggact-----cagagttgcattgtgatctgatggcttttccagca-tttctgtctctatcctgattttctctcacaacta-tttcccctaataaatccttactcatttaatactgtattggggtct
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6029386 177 +   6154872 agcctacacagggtctaggatgcttccagctgaccttcctgccctctctccttcactgggact-----cagagttgcattgtgatctgatggcttttccagca-tttctgtctctatcctgattttctctcacaagta-tttcccctaataaatccttacacatttaatcctgtattggggtct
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74710877 178 + 122973662 aggctgcacagggtctaggatgcttccagctgaccttcctgccctctctccttcattggggct-----cagatttgcagtgtggtctgatggcctccccagcgttttctgtctctctcctgaatttctgtcacaagca-tttcccttaataagtccttgcacatttaatactgtattggggtct
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30261883 174 + 172585720 agcctgcacggggtctgggatgcttccaactgaccttcctgaactctctgcatcactggggct-----cagagttgctttgtggtctgatggctttcccagcattt----tctctctcatgaatttctctcacaagta-tttgccctaataaaaccttacacgtttaccactgtattggggtct
i rheMac8.chr4                 C 0 I 1
s macFas5.chr4_KE145577_random    92854 178 +    231697 agcccgcacagggtctagaaggcttccagctgaccttcctgccctctctccttcactggggct-----cagagttgcagtgtggtctgatggctttcccagtgttttcggtctctctcctgaatttctctcacaagta-tttcctttaataagtccttgcacgtttaatactgtattggagtct
i macFas5.chr4_KE145577_random C 0 I 1
s macNem1.NW_012013156v1          87738 183 +    243043 agcctgcacagggtctaggatgtttccagctgaccttcctgccctctctccttcactggggctcagagcagagttgcagtgtggtctgatggctttcccagtgatttctgtctctctcttgaatttctctcacaagca-tttcccttaataagtccttgcatgtttaatactgtattggggtct
i macNem1.NW_012013156v1       C 0 I 11
s cerAty1.NW_012002535v1              0 178 -    863181 AGCctgcacggggtctgggatgcttccaactgaccttcctgaactctctgcatcactggggct-----cagagttgctttgtggtctgatggctttcccagcattttctgtctctctcatgaatttctctcacaagta-tttgccctaataaagccttacacgtttaccactgtattggggtct
i cerAty1.NW_012002535v1       n 25331 I 1
s chlSab2.chr17                29184180 174 -  71996105 agcctgcacggggtctaggatgcttccaactgatcttcctgaactctctacgtcactggggct-----cagagttgctttgtggtctgatggctttcccaacattt----tctctctcatgaatttctctcacaagta-tttgccctaataaaaccttacacgtttaccactgtattggggtct
i chlSab2.chr17                C 0 I 1
s manLeu1.NW_012107142v1          68294 178 -    735854 aggcagcacagggtctaggatgcttccagccaaccttcctgcactctctccttcactggggct-----cagagttgcagtgtggtctgatagcctccccagtgttttctgtctctctcctgaatttctctcacaagca-tttcccttaataagtccttgcacatttaatactgtattggggtct
i manLeu1.NW_012107142v1       C 0 I 1
s colAng1.NW_012115566v1        2809006 178 -   3067355 agcctgcacttggtctaggatgcttccagctgaccttctctccctttttccctcactggggct-----gagacatgcatcaaagtctaatggcagttccagccttgtctacctttctccccaatctctctcacaaata-tttcccctgagaaatccttgcatgtttaatactgtgttggggtct
i colAng1.NW_012115566v1       C 0 I 178
s cebCap1.NW_016107755v1         342936 168 -   1771730 agccagcacagggtctagggtgcttccagctgaccttcctgccctctctccttcactggggct-----cagagttgcattgtggtc-----------cctgcattttctgtctctttcctgaatttctctcacatgtattttcccctagtaaatccttgtacgtttaatactgtattggggtct
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         423607 168 -    457564 agcctgcacagggtctaggatgcttccagctgagcttcctgccctccctccttcactggggct-----cagagttacattgtggtc-----------cctgcgttttctgtctctttcctgaatttctctcacatgtattttccccaagtaaatccttgcacgtttaatactgtattgaggtct
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I

a score=-3390.000000
s hg38.chr6_GL000254v2_alt      1030895  8 +   4827813 -AAGTT---CAG--
s panTro5.chr6                 29993439  8 + 175400573 -aagtt---gag--
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30227180  8 + 173848474 -aagtt---gag--
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6029563  8 +   6154872 -aagtt---cag--
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74711055 11 + 122973662 -gctcctcagga--
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30262058  8 + 172585720 -ctcct---cag--
i rheMac8.chr4                 I 1 I 2
s macFas5.chr4_KE145577_random    93033  8 +    231697 -ctcct---cag--
i macFas5.chr4_KE145577_random I 1 I 2
s cerAty1.NW_012002535v1            179  8 -    863181 -ctcct---caa--
i cerAty1.NW_012002535v1       I 1 I 2
s chlSab2.chr17                29184355  8 -  71996105 -ctcct---cag--
i chlSab2.chr17                I 1 I 2
s manLeu1.NW_012107142v1          68473  8 -    735854 -ctcct---cag--
i manLeu1.NW_012107142v1       I 1 I 2
s cebCap1.NW_016107755v1         343104 11 -   1771730 gctcct---caggg
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         423775 11 -    457564 gctcct---caggg
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2809184 178 -   3067355 I
e macNem1.NW_012013156v1          87921 11 +    243043 I

a score=492842.000000
s hg38.chr6_GL000254v2_alt      1030903  99 +   4827813 GACCGCAGCTATCAC-AAGTGGTATCAAGGGCGAT------------------CCATGAAAATGACCAAAACTGGAAATTTGAAATAAGCTTTCCCACTGCCTGTCAGGCCAAGAGGA
s panTro5.chr6                 29993447  99 + 175400573 gaccgcagctatcac-aAGTGGTATCAAGGGCAAT------------------CCATGAAAATGACCAAAACTGGAAATTTGAAATAAGCTTTCCCACTGCCTGTCAGGCCAagagga
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30227188  99 + 173848474 gaccgcagctatcac-aAGTGGTATCAAGGGCGAT------------------CCATGAAAATGACCAAAACTGGAAATTTGAAATAAGCTTTCCCACTGCCTGTCAGGCCAagagga
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6029571  99 +   6154872 gaccgcagctatcac-aAGTGGTATCAAGGGCGAT------------------CCATGAAAATGACCAAAACTGGAAATTTGAAATAAGCTTTCCCACTGCCTGTCAGGCCAagagga
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74711066  93 + 122973662 gaccATAgataccacaaagtggtatcaaggg-------------------------tgaaaatgggcaaaaatgggcatttgaaataagctttcccactgcctagcaggccaagagga
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30262068  99 + 172585720 gaccctaactaacac-aAGTGGCATGAAgggtgat------------------ccatgaaaacaggcaaaaatgagaatctgaaataagctttcccactgcctggcaggccaagagga
i rheMac8.chr4                 I 2 C 0
s macFas5.chr4_KE145577_random    93043  91 +    231697 gaccataactaacac--aGTGGTATCAAGGGTGAT-------------------------AATGGGCAAAAATAGGAAATTGAAATAAGCTTTCCCACTGCCTGGTAGACCAAGAGGA
i macFas5.chr4_KE145577_random I 2 C 0
s macNem1.NW_012013156v1          87932 116 +    243043 gaccatagctaacac--aGTGGTATCAAGGGTGATACCACAAAGAGGTATCAAGGGTgaaaatgggcaaaaatgggaatttgaaataagctttcccactgcctggcaggccaagagga
i macNem1.NW_012013156v1       I 11 C 0
s cerAty1.NW_012002535v1            189  99 -    863181 gaccctaattaacac-aAGtggcatgaagggtgat------------------ccatgaaaacaagcaaaaatgagaatctgaaataagctttcccactgcctggcaggccaagagga
i cerAty1.NW_012002535v1       I 2 C 0
s chlSab2.chr17                29184365  99 -  71996105 gaccctaactaacac-aAGTGGCATGAAGGGTGATCC------------------ATGAAAACAGGCAAAAATGAAAATCTGAAATAAGCTTTCCCACTGCCTGGCAAGCCAAGAGGA
i chlSab2.chr17                I 2 C 0
s manLeu1.NW_012107142v1          68483 117 -    735854 gactatagctaacac-aAGTGGTATCAAGGGTGATACCACAAAGAGGTATCAAGGGTGAAAATGGgcaaaaatgggaatttgagataagtttttccactgccttgcaggccaagagga
i manLeu1.NW_012107142v1       I 2 C 0
s cebCap1.NW_016107755v1         343115  99 -   1771730 aaccctagttaacac-aAGCAGTATGAAGAGTGAC------------------CCATGAAAACAGGCAAAACTGGAAATTTGAAATAAGCTCAGCCACTGCCAGGCAGGCCAAGAGGA
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         423786  99 -    457564 gacactaatttacac-aAGtggtatgaacggtgat------------------ccatgaaaacaggcaaaactggaaatttgaaataagctcacccactgcctggcaggccaagagga
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2809184 178 -   3067355 I

a score=228500.000000
s hg38.chr6_GL000254v2_alt      1031002 38 +   4827813 TGCCATCTAGGTTAGC-GGGGGACAAAGAAAGTCCATAG
s panTro5.chr6                 29993546 38 + 175400573 tgccatctaggttagt-gggggacaaagaaagtccatgg
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30227287 38 + 173848474 tgccatctaggttagt-gggggacaaagaaagtccatgg
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6029670 38 +   6154872 tgccatctaggttagt-ggggaacaaagaaagtccgtgg
i gorGor5.CYUI01015250v1       C 0 I 1
s nomLeu3.chr1a                74711159 38 + 122973662 tgccatctgggttagt-gggggacacagatagtccgtgg
i nomLeu3.chr1a                C 0 I 1
s rheMac8.chr4                 30262167 38 + 172585720 tgccacccgggttggt-gggggacacagaaactccatgg
i rheMac8.chr4                 C 0 I 1
s macFas5.chr4_KE145577_random    93134 35 +    231697 TGCCATCTGGGTTAGTCGGGGGAC----ACAGTCTGTAG
i macFas5.chr4_KE145577_random C 0 I 1
s macNem1.NW_012013156v1          88048 38 +    243043 tgccatctgggttagt-gggggacacagacagcccgtgg
i macNem1.NW_012013156v1       C 0 I 1
s cerAty1.NW_012002535v1            288 38 -    863181 tgccacccgggttggt-gggggacatagaaactccatgg
i cerAty1.NW_012002535v1       C 0 I 1
s chlSab2.chr17                29184464 38 -  71996105 TGCCACCCGGGTTGGT-GGGggacacagaaactccatgg
i chlSab2.chr17                C 0 I 1
s manLeu1.NW_012107142v1          68600 38 -    735854 tgccatctgggttagt-gggggacacagacagtccgtgg
i manLeu1.NW_012107142v1       C 0 I 1
s colAng1.NW_012115566v1        2809362 38 -   3067355 TGCCATCTAGGCTGGT-GGGggacagagaaagtccatag
i colAng1.NW_012115566v1       I 178 I 19
s cebCap1.NW_016107755v1         343214 38 -   1771730 TGCCACATGGGTTGGT-GGTAGATACAGAAATTCTGTGG
i cebCap1.NW_016107755v1       C 0 I 18
s aotNan1.NW_018509740v1         423885 38 -    457564 tgccacgtgggttggt-gggaaacacagaaattctgtgg
i aotNan1.NW_018509740v1       C 0 I 18
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I

a score=63098.000000
s hg38.chr6_GL000254v2_alt      1031040 16 +   4827813 AGAAGTTGCGTCTGAG-
s panTro5.chr6                 29993584 17 + 175400573 agaagttgcatctgagc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30227325 17 + 173848474 agaagttgcatctgagc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6029709 17 +   6154872 agaagttgcatctgagc
i gorGor5.CYUI01015250v1       I 1 C 0
s nomLeu3.chr1a                74711198 17 + 122973662 acaaggtgcagctgagc
i nomLeu3.chr1a                I 1 C 0
s rheMac8.chr4                 30262206 17 + 172585720 acaaggtgcagctgagc
i rheMac8.chr4                 I 1 C 0
s macFas5.chr4_KE145577_random    93170 17 +    231697 acaaggtgcagctgagg
i macFas5.chr4_KE145577_random I 1 C 0
s macNem1.NW_012013156v1          88087 17 +    243043 acaaggtgcagctgagc
i macNem1.NW_012013156v1       I 1 C 0
s cerAty1.NW_012002535v1            327 17 -    863181 acaaggtgcagctgagc
i cerAty1.NW_012002535v1       I 1 C 0
s chlSab2.chr17                29184503 17 -  71996105 acaaggtgcagctgagc
i chlSab2.chr17                I 1 C 0
s manLeu1.NW_012107142v1          68639 17 -    735854 acaaggtgcagctgagc
i manLeu1.NW_012107142v1       I 1 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         423923 18 -    457564 I
e cebCap1.NW_016107755v1         343252 18 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2809400 19 -   3067355 I

a score=7098.000000
s hg38.chr6_GL000254v2_alt      1031056 1 +   4827813 T
s panTro5.chr6                 29993601 1 + 175400573 t
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30227342 1 + 173848474 t
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6029726 1 +   6154872 t
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74711215 1 + 122973662 t
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30262223 1 + 172585720 t
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    93187 1 +    231697 t
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          88104 1 +    243043 t
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1            344 1 -    863181 t
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29184520 1 -  71996105 t
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          68656 1 -    735854 t
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         343270 1 -   1771730 T
i cebCap1.NW_016107755v1       I 18 C 0
s aotNan1.NW_018509740v1         423941 1 -    457564 t
i aotNan1.NW_018509740v1       I 18 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2809400 19 -   3067355 I

a score=624988.000000
s hg38.chr6_GL000254v2_alt      1031057  95 +   4827813 GCCGTGGGTCTCACCAGTGCTAACCTGAGAAGATGCTCTGGTTAGGGGAAGCTATGGCAGATGTGGTGATAGAATGCCCTGC---------ACAATAATGATGG
s panTro5.chr6                 29993602  95 + 175400573 gCCGTGGGTCTCACCAGTGCTAACCTGAGAAGATGCTCTGGTTAGGGGAAGCTATGGCAGATGTGGTGATAGAATGCCCTGC---------ACAATAATGATGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30227343  95 + 173848474 gCCGTGGGTCTCACCAGTGCTAACCTGAGAAGATGCTCTGGTTAGGGGAAGCTATGGCAGATGTGGTGATAGAATGCCCTGC---------ACAATAATGATGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6029727  95 +   6154872 gTCGTGGGTCTCACCAGTGCTAACCTGAGAAGATGCTCTGGTTAGGGGAAGCTATGGCAGATGTGGTGATAGAATGACCTGC---------ACAATAATGATGG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74711216  95 + 122973662 gctgtgggtgtcaccagtgcaaacctgagaagatatcctggttaaaagaagctatggcaggtggggtgataggatgccctgc---------acaataatgacgg
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30262224  95 + 172585720 gctgtgggtctcaccagtgctgagctgagaagatgccctggttagagggtgctatggcaggtgtggtgatagaatgccctgt---------acaataaggatgg
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    93188  95 +    231697 gctgtgggtctcaccagtgctaacctgagaagacgtcctgattaaaagcagctatggcaggtgggatgatacaataccctgc---------acaataatgatgg
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          88105  94 +    243043 gctgtgggtgtcaccagtgctaacctgagacgatgtcctggttaaaagaagctgtggcaggtggggtgctagaatgccctgc---------ac-ataatgatgg
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1            345  95 -    863181 gctgtgggtctcaccagtgctgagctgagaagatgccctggtTAGAGGGTGCTATGGCAGGTGTGGTGATAGAATGCCCTGT---------ACAATAAGGATGG
i cerAty1.NW_012002535v1       C 0 n 0
s chlSab2.chr17                29184521  95 -  71996105 gctgtgggtctcaccagtgctgagctgagaagatgccttcgttacagggtgctatggcaggtgtggtgatagaatgccctgt---------acaataaggatgg
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          68657 104 -    735854 gctgtgggtgtcaccagtgctaacctgagaagatgtcctggttaaaagaagctatggcaggtgtggtgattgaatgcctggtgattgaaccacaatagtgatgg
i manLeu1.NW_012107142v1       C 0 I 1
s colAng1.NW_012115566v1        2809419  95 -   3067355 gctgtggatctccccagtgtggacctgagaagatgccctggttagggggtgctatggcaggtggggtgacagaagcctctgc---------actctaatgatgg
i colAng1.NW_012115566v1       I 19 C 0
s cebCap1.NW_016107755v1         343271  95 -   1771730 GCTGTGTGTCTCCCCAGTGCTGAGCTGAGAAGATGCCCTGGTTAGGGGAAGCTATGGCAGGTGCGGTGATAGAATTCCCTGC---------ACAATAAtgaagg
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         423942  95 -    457564 gctgtgggtctccccagtgctgagctgagaagatgccctggttaggggaagctatgggaagtgcagtgatagaattccctgc---------acaataacgatgg
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I

a score=1384534.000000
s hg38.chr6_GL000254v2_alt      1031152 246 +   4827813 AGTTGGGGG-TAAACCCacaaagacagtggagttggctggttacttcccagctgtgttgatgctctataaaaggataatgagaatctgcaggttgttaacagctgtcactggctatgtgtgagagtctctgcagtgtctcatggagaggcctttatctcctggatcaaaagagcagatagcatggaatggtagctga--acatcattatggtgggcacagtgctccagagacgtttgatactcagccaa
s panTro5.chr6                 29993697 246 + 175400573 AGTTGGGGG-TAAACCCacaaagacagtggagttggctgtttacttcccagctgtgttgatgctctataaaaggataatgagaatctgcaggttgttaacagctgtcactggctatgtgtgagagtctctgcagtgtctcatggagaggcctttatctcctggatcaaaagagcagatagcatggaatggtagctga--acatcattatggtgggcacagtgctccagagacgtttgatactcagccaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30227438 246 + 173848474 AGTTGGGGG-TAAACCCacaaagacagtggagttggctgtttacttcccagctgtgttgatgctctataaaaggataatgagaatctgcaggttgttaacagctgtcactggctatgtgtgagagtctctgcagtgtctcatggagaggcctttatctcctggatcaaaagagcagatagcatggaatggtagctga--acatcattatggtgggcacagtgctccagagacgtttgatactcagccaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6029822 246 +   6154872 AGTTGGGGG-TAAACCCacaaagacagtggagttggctggttacttcccagctgtgttgatgctctataaaaggataatgagaatctgcaggttgttaacagctgtcactggctatgtgtgagagtctctgcagtgtctcatggagaggcctttacctcctggatcaaaagagcagatagcatggaatggtagctga--acatcattatggtgggcacagtgctctagagacgtttgatactcagccaa
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74711311 248 + 122973662 aactagggg-gaaacctacaaagacagtggaattggctggttgctttccagctgtgttgatgccctataaaaggataatgagaatctgcagattgttaacagctgtcagtggctacatgtgagagcctctgcagtgtctcatggagaagactttatctcctgtagcgaaaggatagataccacggaatggtagctgaagacatcattatgagggccacagtgctccagagatgtttgacactcagccat
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30262319 247 + 172585720 -ggttgggg-gaaacctacaaagacaggggagttggctggttactgctcggctgcattgttgccctatgaaaggatcatgagaatctgcggaatgttaacagctgtcactggctacatgtgacagcctctgcagtatctcatggagaggtctttatctcctgtaacagaagggcagatagtgtggaatggtagctgaagacgtcattatgagggccacagtgctccagagatgtttgacactcagccaa
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    93283 246 +    231697 -aattgggg-ggaacccacaaagacagtgga-ttggctggttacttcccagctgtgttcatgctctataaaatgataatgagaatctgtagattgttcacagatgtcactggctacgtgtcagagcctctgcagtgtctcatggagaagcctttatctcctgtagcaaaaggatagataccacggaatagtagctgaagacatcattatgagggccacagtgctccagagatgtttgacacccagccaa
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          88199 248 +    243043 -aattggggagaaacccacaaagacagtggatttggctggttacttcccagctgtgtttatgccctataaaaggataatgagaatctgcagattgttcacagctgtcactggctctgtgtgagagcctctgcagtgcctcatggagaagcctttatctcctgcagcgaaaggatagataccatggaatagcagctgaagacatcattatgagagccacagtgctccagagatgtctgacactcagccag
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29184616 247 -  71996105 -ggttgggg-gaaacctacaaagacaggggagttggctggttactgctcggctgcattgttgccctatgaaaggatcatgagaatctgtggaatgttaacagctgtcactggctacatgtgacagcctctgcagtatctcatggagaggtctttatctcctgtaacaaaagggcagatagcatggaatggtagctgaagacatcattatgagggctacagtgctccagagatgtttgacactcagccaa
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          68762 247 -    735854 -agtggggg-gaaacctacaaagacagtggagttgactggttacttcccaactgtgttgatgccctataaaaggataatgagaatctgcagattgttcacagctgtcactggctacatgtgagagcctctgcagtgtctcatggagaagcctttatctcctgtggtgaaaggacagataccatggaatggtagctgaagacatcattatgagggccacagtgctccagagatgtttgacactcagccag
i manLeu1.NW_012107142v1       I 1 C 0
s colAng1.NW_012115566v1        2809514 247 -   3067355 -agtggagg-aaaatctacaaagacagtggtgttcgctggttactgctcaaccacattgataccagacagaagaataatgagaatttgagggctttgaatagctgtcactgtctatgtgtgaaagccTCTGCAGTGTCTTATGGAGAGGCTTTTATCTCCTGTAGCGAAAGGGCAGATAGCGTGGAATGGCAACTGAAGATACCATTGTGAAGGAGACAGTCCTCCAGAGATGTCTGACACAAAGCCAA
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         343366 247 -   1771730 -ggttgggg-aaaacctacaaagacagtggagttggctggttactgctcagctgtgctgatgccctataaaaggatcatgaaaacctgcggattgttaacagccatcacgggctacatgtgacagcctctgcagtgtctcatggagacgcctttacctcctgtagtgaaaggacagacagcatggaattatgattgaaaacatcatttcgagggccacagtgctccagagatgtttgacaattagcaaa
i cebCap1.NW_016107755v1       C 0 I 11
s aotNan1.NW_018509740v1         424037 247 -    457564 -ggttgggg-gaaacctacaaagtcagtggagttggctggttactgctcggctgtgctgatgccctataaaaggatcacgagaacctgcggattgttgacagccatcacgggctacatgtgacagcctctgcagtgtctcatggagaggactttatctcctgtagtgaaaggacagatagcatggaattatggttgaaaacatcattttgagggccacagtgctccagagatatttgacactcagccaa
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002535v1            440   0 -    863181 I

a score=82019.000000
s hg38.chr6_GL000254v2_alt      1031398 19 +   4827813 cacaggccttttataggaa
s panTro5.chr6                 29993943 19 + 175400573 cacaggccttttataggaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30227684 19 + 173848474 cacaggccttttataggaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6030068 19 +   6154872 cacaggccttttataggaa
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74711559 19 + 122973662 cgcagtcctgttataggaa
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30262566 19 + 172585720 ggcaggcctgttacaggaa
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    93529 19 +    231697 tgcaggcccgttataagaa
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          88447 19 +    243043 tgcaggcccgttataggaa
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29184863 19 -  71996105 ggcaggcctgttacaggaa
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          69009 19 -    735854 cgcaggcctgttataagaa
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2809761 19 -   3067355 GGCATGCCTGTTGTGGGAA
i colAng1.NW_012115566v1       C 0 C 0
s aotNan1.NW_018509740v1         424284 19 -    457564 ggcaggcctgttacagcaa
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         343613 11 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002535v1            440  0 -    863181 I

a score=1625690.000000
s hg38.chr6_GL000254v2_alt      1031417 298 +   4827813 agtcagggccctggtgggggaacctcagattctgcaaactagaacagagttatctgatgggtgcccTCCTCCAGGACCCCCTGGGCATGCAGAGGAGGCTCACCCTTCTCTAGTAATCGTTCCCACTTCCTATGCTGAAAGATGCTACAGAAGCCTCACTCCTACGATGCAGCAGGAATCCCACTCaggagctttgcaggaactagccagcatgtccccataggggcctggggtgcacttctgggatt-ggaatttgagggcatttgatcaataaactagaatttcagtctggatgaat
s panTro5.chr6                 29993962 298 + 175400573 agtcagggccccagtgggggaacctcagattctgcaaactagaacagagttatctgatgggtgccctcctccaggaccccctgggcatgcagaggaggctcacccttctctagtaatcattcccacttcctatgctgaaagatgctacagaagcctcacccctacgatgcagcaggaatcccACTCaggagctttgcaggaactagccagcatgtccccataggggcctggggtgcacttctgggatt-ggaatttgaggacatttgatcaataaactagaatttcagtctggatgaat
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30227703 298 + 173848474 agtcagggccccagtgggggaacctcagattctgcaaactagaacagagttatctgatgggtgccctcctccaggaccccctgggcatgcagaggaggctcacccttctctagtaatcattcccacttcctatgctgaaagatgctacagaagcctcacccctacgatgcagcaggaatcccACTCaggagctttgcaggaactagccagcatgtccccataggggcctggggtgcacttctgggatt-ggaatttgaggacatttgatcaataaactagaatttcagtctggatgaat
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6030087 299 +   6154872 agtcagggccctggtgggggaacctcagattctgcaaactagaacagagttatctgatgggtgccctcctccaggaccccctgggcatgcagaggaggctcacccttctctagtaatcgttcccacttcctatgctgaaagatgctacagaagcctcacccctacgatgcagcaggaatcccACTCaggagctttgcaggaactagccagcatgtccccataggggcctggggtgcacttctgggattgggaatttgagggcatttgatcaataaactagaatttcagtctggatgaat
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74711578 294 + 122973662 actcagggccattgtggggaaaactgagattctgaaaactggaaaaagatcatccaatgggtg----ctgccaggatcctctgggcatgcagaggaggctcacccttctctagtagtggttcccaatttctatgctggaagatgctgcagaagcctcatccctatgatgcagcaggaatcccACTCaggagctttgcaggaaccagccagcatgtcccaacaggagcacagagagcacttctgggatt-gaaacttgagggtgtttgatcaaggggtcagaatgtcaggctggatgaat
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30262585 295 + 172585720 agtcagggccctggtggggaaacctgagaTTCTGCAAACTGGAATAGGATTATGCGATGGGTGCTGTCT---AGGATCTTCGGGGCATGCAGAGGAAGCTCACCCTTTTCTAGTAATGGTTCCCACTTCTTATGCTGGAAGATGCTACAGAAGCCTCATCCCTATGATGCCATGGGAATCCCACTTaggagctttgcaggaactagctagcacgtccccataggaggctggggaccacttctgggatt-ggaatttgagggcctttgattaaggaaccagaatttcagtctggatgaat
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    93548 294 +    231697 agtcagggccatggtggggaaacctgagattctgcaaactggaacaagatcatccgatgggtgccgccc----ggatcctctgggcatgcagaggaggctcacccgtctctagcaatggttcccacttcctatgctggaagatgctgcagaagcctcatccctaTGACACATTGGGAATCCCACTCaggagctttgcaggaaccagctggcgggtcccaataggagcacggggagcacttctgggact-gaaatttgagggtgtgtgatcaaggggtcagaatgtcaggctggattaat
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          88466 294 +    243043 agtcagggccatggtggggaaacctgagaTTCTGCATTTTGGAACAAGATCATCCGATGGGTGCCGCCC----GGATCCTCTGGGCATACAGAGGAGGCTCACCCTTCTCTAGCAATGGTTCCCACTCCCTATGCTGGAAGATGCTGCAGAAGCCTCATCCCTGTGATGCGTTGGGAATCTCACTCAGGAGCCTTGCAGGAACCAGCCGGCGTGTCCCAATAGGAGCATGGGGAGCACTTCTGGGACT-GAAATTTGAGGGTGTGTGATGAAGGGGTCAGAATGTCAGGCTGGATTAAT
i macNem1.NW_012013156v1       C 0 C 0
s chlSab2.chr17                29184882 294 -  71996105 agtcagggcc-cggtggggaaacctgagattctgcaaactggaataggattatgcgatgggtgctgtct---aggatctttggggcatgcagaggaagctcacccttttctagtaatggttcccacttcttatgctggaagatgctacagaagcctcatccctatgatgccatgggaatcccACTTaggagctttgcaggaactagctagctcgtccccatagggggctggggaccacttctgggatt-ggaatttgagggcctttgattaaggaaccagaatttcagtctggatgaat
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          69028 294 -    735854 agtcagggccacagtggggaaacctgagattctgcaaactggaacaagatcatctgatgggtgcTGCCC----GGATCCTCTGGGCATATAGAGGACACTCACCCTTCTCTAGCAATGGTTCCCACTTCCTATGCAGGAAGATGCTGCAGAAGCCTCATCCCTGTGACGCAGCGGGAATCCCACTCaggagctttgcaggaaccagccggcatgtcccaataggagcacggggagcacttctgggact-gaaatttgagggtgtgtgatcaaggggtcagaatgtcaggctggattaat
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2809780 295 -   3067355 AGTCAGGGCCCTGGTGGGGAAACCTGAGCATCTGCAAACTGGAACAGGGTTATCCAACGGGTGCCCTCC---AGGACCCTTTGGGCATGCAGGGGAGGCTTGCCTTTCTCTAGTAATGGTTCCCACTACCTATGTTGAAAGATGCTACAGAAACCTCATCCCTATGACGCAGCAGGAATCCCATTCaggagctttgcaggaactagccaacatgtccctgtaggagcctgaggagcacatttgggatt-ggaatttgagaacttttgataaaggaggcagaatttcaggctgaataaat
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         343624 292 -   1771730 AGTCAGAGCCCTGGTGGGGAAACTTGAGATTCTGCAAACTGGAACAGGGTTATCCGATGGGTGCCCTGC---AGGATCTTCTGGGCATGCA-AGGAGTCTCACCTTTCTTTATTAATGGTTCCCACTTCCTGTGCTGGAAGATGCTGCAGAAGCCTCACCCCTAGGATGCAGCGGGAATCCCACTCaggagctttgcaggaactc-ctggcacttccctgtaggagcccgaggagcacttct-ggatt-ggaatttgacggcgtttgattaaggaaccataatttcaggctgaatgaat
i cebCap1.NW_016107755v1       I 11 C 0
s aotNan1.NW_018509740v1         424303 293 -    457564 agtcagaaccctggtggaggaacctgagattctgcaaactggaacagggttatccgatgggtgccctcc---aggatcttCTGGGCATGCAGAGGAGTCTCGCCTTTCTTTAGTAATGGTTCCCACTTCCTATGCTGGAAGATGCTGCAGAAGCCTCACGCCTAGGATGCAGCGGGAATCCCACTCaggagctctgcaggaactc-ccggtacttccctgtagcagcctgaggagcacttctgggatt-ggaatttga-gggatttgattaaggaaccataatttcaggctggatgaat
i aotNan1.NW_018509740v1       C 0 I 70
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002535v1            440   0 -    863181 I

a score=228596.000000
s hg38.chr6_GL000254v2_alt      1031715 47 +   4827813 aaaaatcctttggcttggaggcactttctcaggacatgggtttatca
s panTro5.chr6                 29994260 47 + 175400573 aaaaatcctttggcttggaggcactttctcaggacatgggtttatca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30228001 47 + 173848474 aaaaatcctttggcttggaggcactttctcaggacatgggtttatca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6030386 47 +   6154872 aaaaatcctttggcttggaggcactttctcaggacatgggtttatca
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74711872 47 + 122973662 gaaaatcctttggattggaggcactttctcagggcatgggtttatca
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30262880 47 + 172585720 aaaaataatttggcttggaggcactttctcagggcacgggtttatca
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    93842 47 +    231697 gtaaatccattggcttggaggcactatctcagggcatgggtttatca
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1          88760 47 +    243043 GTAAATCCATTGGCTTGGAGGCACTATCTCAGGGCATGGGTTTATCA
i macNem1.NW_012013156v1       C 0 I 11861
s chlSab2.chr17                29185176 47 -  71996105 aaaaatcatttggcttggaggcactttctcagggcacgggtttatca
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          69322 47 -    735854 gtaaatccattggcttggaggcactatctcagggcatgggtttatca
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2810075 46 -   3067355 gaaaattctttggcttag-ggtactttctcagggtgtaggcttatca
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         343916 47 -   1771730 aaaagtccttgggattggaggcattttcataggatgtgggtttatca
i cebCap1.NW_016107755v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         424596 70 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002535v1            440  0 -    863181 I

a score=39562.000000
s hg38.chr6_GL000254v2_alt      1031762 15 +   4827813 aagaacccaggacat--------
s panTro5.chr6                 29994307 15 + 175400573 aagaacccaggacat--------
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30228048 15 + 173848474 aagaacccaggacat--------
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6030433 15 +   6154872 aagaccccaggacat--------
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74711919 15 + 122973662 aacaccccagaactt--------
i nomLeu3.chr1a                C 0 I 9
s rheMac8.chr4                 30262927 15 + 172585720 aacaccccaggactt--------
i rheMac8.chr4                 C 0 I 9
s macFas5.chr4_KE145577_random    93889 15 +    231697 gacaccccagaactt--------
i macFas5.chr4_KE145577_random C 0 I 9
s chlSab2.chr17                29185223 15 -  71996105 aacaccccaggactt--------
i chlSab2.chr17                C 0 I 9
s manLeu1.NW_012107142v1          69369 15 -    735854 gacaccccagaactt--------
i manLeu1.NW_012107142v1       C 0 I 9
s colAng1.NW_012115566v1        2810121  7 -   3067355 --------aggaccc--------
i colAng1.NW_012115566v1       C 0 I 9
s cebCap1.NW_016107755v1         343963 23 -   1771730 aacaccccaggactttgataagt
i cebCap1.NW_016107755v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         424596 70 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002535v1            440  0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=2137269.000000
s hg38.chr6_GL000254v2_alt      1031777 452 +   4827813 ggggtaaacccactact-ggggtgagtccatatagactggaaaaaatgatgcccaactctcaacaaggtagatatgacctagttatcctggaacatgtagaggatgcaataacaaggctgagggaagtgggcgtgatgaa------------------------ggcccaccaggaccatgctccacaagaggacccagagggcacatcttccaccagagcctcaggaacatgctgtggagagggacctgcatcactaagaagtgtcggggtgttatcctctgcaggctgggggtaatgatagtaaa---ggtcccagagttgtgcttattcatatctctggggagaatgtgggcctgaagagactgagaacaagtggtggcagtgacctgcaaaagccggagggcatggttaccatggcaacctcagaggagcagccaaggggactcaagctgcagggag-tgtggggaaagttagtaga
s panTro5.chr6                 29994322 452 + 175400573 ggggtaaacccactact-ggggtgagtccatatagactggaaaaaatgatgcccaactctcaacaaggtagatatgacctagttatcctggaacatgtagaggatgcaataacaaggctgagggaagtgggtgtgatgaa------------------------ggcccaccaggaccatgctccacaagaggacccagagggcacaccttccaccagagcctcaggaacatgctgtggagagggacctgcatcactaagaagtgtcggggtgttatcctctgcaggctgggggtgatgatagtaaa---ggtcccagagttgtgcttattcatatctctggggagaatgtgggcctgaagagactgagaacaagtggtggcagtgacctgcaaaagccggagggcatggttaccatggcaacctcagaggagcagccaaggggactcaagctgcagggag-tgtggggaaagttagtaga
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30228063 452 + 173848474 ggggtaaacccactact-ggggtgagtccatatagactggaaaaaatgatgcccaactctcaacaaggtagatatgacctagttatcctggaacatgtagaggatgcaataacaaggctgagggaagtgggcgtgatgaa------------------------ggcccaccaggaccatgctccacaagaggacccagagggcacaccttccaccagagcctcaggaacatgctgtggagagggacctgcatcactaagaagtgtcggggtgttatcctctgcaggctgggggtgatgatagtaaa---ggtcccagagttgtgcttattcatatctctggggagaatgtgggcctgaagagactgagaacaagtggtggcagtgacctgcaaaagccggagggcatggttaccatggcaacctcagaggagcagccaaggggactcaagctgcagggag-tgtggggaaagttagtaga
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6030448 452 +   6154872 ggggtaaacccactact-ggggtgagtccatatagactggaaaaaatgatgcccaactctcaacaaggtagatatgacctagttatcctggaacatgtagaggatgcaataacaaggatgagggaagtgggcgtgatgaa------------------------ggcccaccaggaccatgctccacaagaggacccagagggcacaccttccaccacagcctcaggaacatgctgtggagagggacctgcatcactaagaagtgtcggggtgttatcctctgcaggctgggggtgatgatagtaaa---ggtcccagagttgtgcttattcatatctctggggagaatgtgggcctgaagagactgagaacaagtggtggcagtgacctgcaaaagccggagggcatggttaccatggcaacctcagaggagcagccaaggggactcaagctgcagggag-tgtggggaaagttagtaga
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74711943 444 + 122973662 aggataaacccactgct-ggggtgaat---------ctagaaaaaatgattcccaaatatcaacaaggtatacatgtcttagttgccggagaacatgtagaggatggaataatgaggctgagcgagttgggcatggtgaa------------------------ggcccaccaagaccatgctccacaagaggacggagacggcacaccttccaccagagcct--ggaacgtgatggtgagagggaccttcatcactaagaagtgttggggtgttgccctctgcaggctgggtgtgatggtaataaagatggtcccagagttgcatttatttatatcgctggggagtgtgtggccctgaagagacaaagaccaagtggtggcagtgacctgcaaaagccacagagcaccattactatggcagcttcagaggagcagccaataggactcaagctgcagctaa-tgtgtgtaaggttaataga
i nomLeu3.chr1a                I 9 C 0
s rheMac8.chr4                 30262951 454 + 172585720 gaggttattccactgct-gggatggatccatataaactggaaaaaaagatgcccaactctcaacaaggtagacatgtcttagttgctctggaacatgtaggtgatggaataacgaggctgaggaaagtgggcatggggaa------------------------ggcccaccaggactatgctctacaagagggcccagaggacacactttccaccagagcctcaggaacgtgatggtgagagggacctgcatcattaagaagtgtcggggtgttgtcctctgcaggctggggat-atggtagtaaagatggtctcagagttgcatttattaatatccttgggaagagtgtggccctgaagagacagagaccaagtggtgacagtgacctgcagaagccagagggcacggttactatggcaacttcagaggagcagccaagaggactcgagctgcaggtag-tgtggggaaggttaataga
i rheMac8.chr4                 I 9 C 0
s macFas5.chr4_KE145577_random    93913 446 +    231697 ggggtaaacccactgct-ggggtgaatctagataaact---------gattcccaaatctcaacaaggtagacatgtcttagttgccctagaacatgcagaggatggaataacgaggctgagtgaattgggcatggtgaa------------------------ggcccactaagaccatgctccacaagaggatccagacggcacaccttccaccagagcctcaggaacgtgatggcgagagggagctgcatcactaagaagtgttggggtgttgtcctctgcagactgggggtgatggtagtaaagacagtcccagagttgcatttattaatatccctggggagggtgtggccctgaagagacaaagaccaagtggtggcagtgatctgcaaaagccagacagcaccattactatgtcagcctcagaggggcagccaagaggactcaagctgcagggaa-tgtggggaaggttaataga
i macFas5.chr4_KE145577_random I 9 C 0
s chlSab2.chr17                29185247 454 -  71996105 gaggttattccactgct-ggggtgaatccatataaactggaaaaaaagatgcccaactctcaacaaggtagacatgtcttagttgctctggaacatgtagatgatggaataacgaggctgaggaaagtgggcatggggaa------------------------ggcccaccaggactatgctctacaagagggcccagaggacacactttccaccagagcctcaggaacatgatggtgagagggacctgcatcattaagaagtgtcggggtgttgtcctctgcaggctggggat-atggtaataaagatggtctcagagttgcatttattaatatccttgggaggagtgtgaccctgaagagacagagaccaagtggtgacagtgacctgcagaagccagagggcatggttactatggcaacttcagaggagcagccaagaggactcgagctgcaggtag-tggggggaaggttaataga
i chlSab2.chr17                I 9 C 0
s manLeu1.NW_012107142v1          69393 445 -    735854 ggggtaaacccactgct-ggggtgaatccagataaaat---------gattcccaaatctcaacaaggtagacatgccttagttgccctagaacatgtagaggatggaataacgaggctgagtgaattgggcatggtgaa-------------------------gccccccaagaccatgctccacaagaggatccagacggcacaccttccaccagagcctcaggaacgtgatggcgagagggacctgcatcactaagaagtgttggggtgttgtcctgtgcaggctgggggtaatggtagtaaacatggtcccagagttgcatttattaatatccctgggaggggtgtggccctaaagagacaaagactaagtggtgacagtgacctgaaaaagccatagagcaccgttactatggcagcctcagagtagcagccaagagcactcaagctgcagggaa-tgtagggaagcttaatagg
i manLeu1.NW_012107142v1       I 9 C 0
s colAng1.NW_012115566v1        2810137 477 -   3067355 g-ggcaaatccactgct-ggggtggatccatgtagaccagaaaatatgatgcccaactatcaacaagttatacctgacttacttgctctggaacatgtagaggatag-ataatgaggctgagggaagtgggcatgtggaatggagacattatgtgaggccagaaggcccaccagggccatgctccac-agaggacccagagggcacaccttctaccagagcctcaggaatgtgctggtgagaggcacctgcataactaagaaatgtcagggtattgtcctctgcaggatagtggtgatggtagaaaaggtgatcccagagttgagctcattaatatccctggtaagggtgtgaccctgaagagatagagacaaagtggtggtagtgacctgcaaaagccagatggcatggttaccatgacaatctcagaggagcagctgagggggcttgaccttcagggagttgtggggaaggttaataga
i colAng1.NW_012115566v1       I 9 I 25
s cebCap1.NW_016107755v1         343986 454 -   1771730 ggggtaaacccatggct-ggggtgaatctatatagactagaaaaaaagatgcccaactctcaacaaggtagacatgtctcagttgccctggaacatgtagtggatggaataatgaggccgggggaagtgggcatggtgaa------------------------ggtgccccaggaccatgctccacaagagggtgcagagggcacaccatttgccagagcctcaggaacgtgctggtgagagagacctgcatcactaacaagtgtcagggtgttgtcctctgcaggctgggggtgacggtagtaaagatggtcccagagttgcatttatttatatccctgtg-agagtgtggccctgaagagacaaagaccaagtagtggcagtgacctgcaaaagccagagggcaccgttactatggcaacctcagagaaacagccaagaggacccaaaatgcagggaa-cgtgtggaaggttaataga
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         424666 455 -    457564 ggggtaaacccatggctgggggtgaatccatatagacaagaaaaaataatgcccaactctcaacaaggtagacatgtctcagttgccctggaacatgtagaggatggaataacaaggctggggggagtgggcgtggtgaa------------------------ggtgcaccaggaccatgctccacaagagggtccagagggcacaccttccaccagagcctcaggaatgcgctggtgagagggacctgcatcactaacaagtgtcggggcgttgtcctctgcaggctgggggtgacggtagtaaagatggtcccagggttgcatttatttgtatccctggg-agagtgtcgccctgaaaagacaaagaccaagtagtggcagtgacctgcgaaagccagagggcaccgttactatggcaacctcagaggagcagccaagaggactcaagctgcagggaa-cgtgtggaaggttaataga
i aotNan1.NW_018509740v1       I 70 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002535v1            440   0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=3821.000000
s hg38.chr6_GL000254v2_alt      1032229 3 +   4827813 g---ag
s panTro5.chr6                 29994774 3 + 175400573 g---ag
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30228515 3 + 173848474 g---ag
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6030900 3 +   6154872 g---ag
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74712387 6 + 122973662 gggtgg
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30263405 3 + 172585720 g---gg
i rheMac8.chr4                 C 0 I 7
s macFas5.chr4_KE145577_random    94359 6 +    231697 gtttgg
i macFas5.chr4_KE145577_random C 0 I 1
s chlSab2.chr17                29185701 3 -  71996105 g---gg
i chlSab2.chr17                C 0 I 4
s manLeu1.NW_012107142v1          69838 3 -    735854 g---gg
i manLeu1.NW_012107142v1       C 0 I 4
s cebCap1.NW_016107755v1         344440 3 -   1771730 g---gg
i cebCap1.NW_016107755v1       C 0 I 1
s aotNan1.NW_018509740v1         425121 3 -    457564 g---gg
i aotNan1.NW_018509740v1       C 0 I 7
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2810614 25 -   3067355 I
e cerAty1.NW_012002535v1            440 0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=-4679.000000
s hg38.chr6_GL000254v2_alt      1032232 4 +   4827813 gaca
s panTro5.chr6                 29994777 4 + 175400573 gaca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30228518 4 + 173848474 gaca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6030903 4 +   6154872 gaca
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74712393 4 + 122973662 tgtc
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    94366 3 +    231697 gtc-
i macFas5.chr4_KE145577_random I 1 C 0
s chlSab2.chr17                29185708 3 -  71996105 gcc-
i chlSab2.chr17                I 4 C 0
s manLeu1.NW_012107142v1          69845 3 -    735854 gtc-
i manLeu1.NW_012107142v1       I 4 C 0
s cebCap1.NW_016107755v1         344444 4 -   1771730 ggca
i cebCap1.NW_016107755v1       I 1 I 2
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         425124 7 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2810614 25 -   3067355 I
e cerAty1.NW_012002535v1            440 0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30263408 7 + 172585720 I

a score=42681.000000
s hg38.chr6_GL000254v2_alt      1032236 11 +   4827813 ccagggttaca
s panTro5.chr6                 29994781 11 + 175400573 ccagggttaca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30228522 11 + 173848474 ccagggttaca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6030907 11 +   6154872 ccagggttaca
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74712397 11 + 122973662 ccagggttagg
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30263415 11 + 172585720 ccaaggttagg
i rheMac8.chr4                 I 7 C 0
s macFas5.chr4_KE145577_random    94369 11 +    231697 ccagggttagg
i macFas5.chr4_KE145577_random C 0 C 0
s chlSab2.chr17                29185711 11 -  71996105 ccaaggttagg
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          69848 11 -    735854 acagggttagg
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         344450 11 -   1771730 ctagggttagg
i cebCap1.NW_016107755v1       I 2 C 0
s aotNan1.NW_018509740v1         425131 11 -    457564 ccagggttagg
i aotNan1.NW_018509740v1       I 7 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2810614 25 -   3067355 I
e cerAty1.NW_012002535v1            440  0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=1345521.000000
s hg38.chr6_GL000254v2_alt      1032247 298 +   4827813 agaggcagccaacaagggcactgcttgatatatatgataagaaagcaagaattgaggagcaggagactgagggtgttcgaccaaatacaaagccatgatccccttctcaatgcctagacctcaatcaagattcagactcagatctcagtgaca---ga-----------------------------------ggaggagtccatatccctagag-aaaggaccctgggacaccatgg-aggtatatggctgggacaattccctcagt-ctttcagcaagggaacctatagccatttactcaggagactgtacattgggg-aagggaaataggcagaact
s panTro5.chr6                 29994792 298 + 175400573 agaggcagccaacaagggcactgcttgatatatatgataagaaagcaagaattgaggagcaggaggctgagggtgttcgaccacatacaaagccatgatccccttctcaatgcctagacctcaatcaagattcagactcagatctcagtgaca---ga-----------------------------------ggaggagtccatatccctagag-aaaggaccctgggacaccatgg-aggtatatggctgggacaattccctcagt-cttttggcaagggaacctatagccatttactcaggagactgtacactgggg-aagggaaataggcagaact
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30228533 298 + 173848474 agaggcagccaacaagggcactgcttgatatatatgataagaaagcaagaattgaggagcaggaggctgagggtgttcgaccacatacaaagccatgatccccttctcaatgcctagacctcaatcaagattcagactcagatctcagtgaca---ga-----------------------------------ggaggagtccatatccctagag-aaaggaccctgggacaccatgg-aggtatatggctgggacaattccctcagt-cttttggcaagggaacctatagccatttactcaggagactgtacactgggg-aagggaaataggcagaact
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6030918 297 +   6154872 agaggcagccaacaagggcactgcttgatatatatgataagaaagcaagaattgaggagcaggaggctgagggtgttcgaccacatacaaagccatgatccccttctcaatgcctagacctcaatcaagattcagactcagatctcggtgaca---ga-----------------------------------ggaggagtccatatccctagag-aaaggaccctgggacgccatgg-aggtatatggctgggacaatt-cctcagt-cttttggcaagggaacctatagctatttactcaggagactgtacattgggg-aagggaaataggcagaact
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74712408 297 + 122973662 acatgcaaccaacaagggtgctggttgatatttatgataagaaagcaagaattgaggagcaggagggtaaagttttttgacccaatacaaagtcatgatcccatcctcaatgcctagacctcaaccaagattcagattcagatttcagtgaca---ga-----------------------------------ggaggagtccatatccctagaa-ggaagaccctgcaaccccgtgg-aagtatat-gctggcacaattccctcagt-ccttcagcaaaggaacccatagccatttactcaggagattgtacactgggg-aaagaaaactggcagaact
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30263426 332 + 172585720 acaggtagccaacaagggcgctgcttgatgtctatgataagaaagaaagaactgaggagcaggagggtgaaggtgtttgacccaatacaaagtcacgatcccatcctcaatgcctagacctcaaccaagattcagattcagatctcagtgaca---gaggaggagtccacaagattcagatctcagtgacagaggaggagtccatatccctagga-gaaagaccctgcaaccccacgg-aagtatat-gctgggacaattccctcagt-cattcggcagaggaacctatagtaatttacacaggagactgtacactgggg-aaaggaaacaggcagaact
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    94380 297 +    231697 acaggcaactaacaagggcactggttgatatttatgataataaagcaagaattgagaagcaggagggtaaaggtttttgaaccaatac--agtcatgatcccatcctcaatgcctagacctcagccaagattcagattcagatcccggtgaca---ga---------cat--------------------------ggagtccatatccctaaga-ggaataccctgtaacctcgtga-aagtatat-gccgggacaatcccctcagtcccttcggcaaaggaacctatagtcatttactcaggagactgtaccctggggaaaaggaaacaggcagaact
i macFas5.chr4_KE145577_random C 0 C 0
s chlSab2.chr17                29185722 297 -  71996105 acaggcagccaacaagggcgctgcttgatgtttatgataagaaagaaagaactgaggagcaggagggtgaaggtgtttgacccaatacaaagtcacgatcccatcctcaatgcctagacctcaaccaagattcagattcagatctcagtgaca---ga-----------------------------------ggaggagtccatatccctagga-gaaagaccctgcaaccccacgg-aagtatat-gctgggacaattccctcagt-cattcggcagaggaacctatagtaatttacacaggagactgtacactgggg-aaaggaaacaggcagacct
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          69859 287 -    735854 acaggcagtcaacaagggcacttgttgatatttatgataacaaagcaagaattgaggaacaggaaggtaaaggtttttgacccaatacaaagtcatgatcccatcctcaaagcctagacctcagccaagattcagattcagatctcagtgaca---ga-----------------------------------ggaagtgac----------aga-ggaagaccctgcaatcccgtgg-aagtatat-gctgggacaattccctcagt-ccttcggcaaaggaacctatagccatttactcgggagactgtacactgggg-aaaggaaacaggcagaact
i manLeu1.NW_012107142v1       C 0 I 36
s colAng1.NW_012115566v1        2810639 299 -   3067355 acaggcagccagcaagtgcactgcttcatatctatgataagaaagcaagaattgatgagcaggaggctgagagtgtctaacccaaaacaatgtcataatcccattctcaattcctaaacttcagccaagtttcagattcagatcccagttaca---ga-----------------------------------ggaggagtccacacccccaggatgaaagaccctggaacgacatggcaaatatat-gctgggtcaattccctgagc-tcttctgcatagggatctacagccatttactcaggatattgtacactgggg-aagggaaataggcagaact
i colAng1.NW_012115566v1       I 25 C 0
s cebCap1.NW_016107755v1         344461 297 -   1771730 acagg-agccaaaaagggcactgcttgatatctatgataggaaagcaagaattgagggtcaagagggtgaaggtgtttgacacaatacaaatttctgatcccatcatcagtgtctagacctcagccacgattcagattcagatctcagtgacagagga-----------------------------------ggaggagtccatatccc-agaa-ggaactccctgcaaccctgtgg-aggtatat-gctgggacaattctctcagg-ccttc-ccaaagaaacatatagccatttactcaggagactgtacactgggg-aaagcaaacaggcagaact
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         425142 296 -    457564 acaggcagtcaacaagggcactgcttgatatctatgataggaaagcaagaactgagggtcaggagggtgaaggtgtttgaagcaatacaaatttctgatcccatcctcagtgtctggacctcagtcacaattcagattcagatctcagtgaca---ga-----------------------------------ggaggcgtccatatccc-agga-ggaacaccctgcaaccctgtgg-aggtatat-gctgggacaattccctcagg-ccttcggcaaagaaacctatagccatttactcaggagactgtacactgggg-aaaggaaacaggtagaatg
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002535v1            440   0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=108524.000000
s hg38.chr6_GL000254v2_alt      1032545 38 +   4827813 aggggggatcattttcactgcatgtaagctgatattga
s panTro5.chr6                 29995090 38 + 175400573 aggggggatcattttcattgcatgtaagctgatattga
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30228831 38 + 173848474 aggggggatcattttcattgcatgtaagctgatattga
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6031215 38 +   6154872 aggggggatcattttcattgcatgtaagctgatattga
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74712705 37 + 122973662 -ggggggattattgatactgggtgtgagctgacagtga
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30263758 36 + 172585720 -ggggggattattagcactaggtgtgagct-acatgga
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    94677 36 +    231697 -ggggggattactgacactggctgtgaggg-acactga
i macFas5.chr4_KE145577_random C 0 C 0
s chlSab2.chr17                29186019 36 -  71996105 -ggggggattattagcactaggtgtgagct-acatgga
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2810938 37 -   3067355 -ggggagagtattgacactgcctgtgagctgacattga
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         344758 37 -   1771730 -aggaggattattaacactgggtgtgagctgacactga
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         425438 36 -    457564 -aggggga-tactgacactgggtgtgagctgacactga
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          70146 36 -    735854 I
e cerAty1.NW_012002535v1            440  0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=1434109.000000
s hg38.chr6_GL000254v2_alt      1032583 308 +   4827813 tgcccagatgcccacagcacaatcatcttctccatcacagtggggcttacggaggccagggagtaaacctggacacattatggcccgcaatgggaccactggatgcatagacccaaccctgattatcttccaattccctgagtgcataattgacactgatgctctggtaagtggagtcacccccacactgggtccccagtctgtggtataagggatctcttgatgccaaaggccaaagggaaacctctgaaactgcccccatcctggccaaatcaaaaatcatagtgtgtccc-agcgtgggtcttgtg---
s panTro5.chr6                 29995128 308 + 175400573 agcccagatgcccacagcacaatcaccttctccatcacagtggggcttacagaggccagagagtaaacctggacacattatggcccgcaatgggaccactggatgcatagacccaaccctgattatcttccaattccctgagtgcataattgacactgatgctctggtaagtggagtcacccccacactggttccccagtctgtggtataagggatctcttgatgccaaaggccaaagggaaacctctgaaactgcccccatcctggccaaatcaaaaatcatagtgtgtccc-agggtgggtcttgtg---
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30228869 308 + 173848474 agcccagatgcccacagcacaatcaccttctccatcacagtggggcttacagaggccagagagtaaacctggacacattatggcccgcaatgggaccactggatgcatagacccaaccctgattatcttccaattccctgagtgcataattgacactgatgctctggtaagtggagtcacccccacactggttccccagtctgtggtataagggatctcttgatgccaaaggccaaagggaaacctctgaaactgccaccatcctggccaaatcaaaaatcatagtgtgtccc-aggatgggtcttgtg---
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6031253 308 +   6154872 tgcccagatgcccacagcacaatcaccttctccatcacagtggggcttacggaggccagggagtaaacctggacacattatggcccgcaatgggactactggatgcatagacccaaccatgattatcttccaattccctgagtgcataattgacactgatgctctggtaagtggagtcacccccacactgggtccccagtctgtggtataagggatctcttgatgccaaaggccaaagggaaacctctgaaactgcccccatcctggccaaataaaaaatcatagtgtgtccc-agggtgggtcttgtg---
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74712742 307 + 122973662 cgcccagatgcccacagcactatcatgtctcccattacagtggggcttatgg-ggccagggagtaaacctggacatattatggcccacaatgggaccattggatccatagacccagccctggttatcttccaattccctgagttgggaattgacactgatccactgttaggtggagccacccccacactggacccctagtctgtggagtaagggctctcattgtgctgaaagccaaagggaaacctctgaaactgcccacatcctggccaaatcagaaatcatagtgtgtccc-agggtgggtcttgtg---
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30263794 302 + 172585720 tgcccagatgcccacagcaccatcatgtctctcatcaca-----gcttacggaggccagggagtaaacctggacacattatggcctacaatgggaccactggatccatagactcagccctcattatcttccaattccctgagtgcataattgacactgatgcactgttaggtggagtcacccccacactgggtccctagtctatagagtaagggctgtcattgtgctgaaagcccaagggaaacctctgacactgcccccatctggcccaaatcaaaaatcatagcgtgaccc-agg-tgggtcttgtg---
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    94713 308 +    231697 tgcccagatgcccacagcaccatcatgtctcctatcacagtggggcttacggaggtcaaggagtaaacctggacacattatggcccacaatgggaccactggattcacagacccagccctggttatcttccaattccctgagtgcataattgacactgatgcacttctaagtggagtcacccccacactgggtccctagtctgtggagtgaggactctcattgtgctgaaagacaaagggaaacctctgacactgcccccatcccggccaaatcagaaatcatagtgtgtccc-aggttgggtcttgtg---
i macFas5.chr4_KE145577_random C 0 C 0
s chlSab2.chr17                29186055 301 -  71996105 tgcccagatgcccacagcaccatcatgtctctcatcaca-----gcttacggaggccagggagtaaacctggacacattatggcctacaatgggaccactggatccatagactcagccctcgttatcttccaattccctgagtgcataattgacactgatgcactgttaggtggagtcacccccacactgggtccctagtctatagagtaagggctgtcattgtgctgaaagcccaagggaaacctctgacactgcccccat-ctggccaaatcaaaaatcatagcgtgaccc-agg-tgcgtcttgtg---
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          70182 308 -    735854 tgcccagatgcccacagcactatcatgtctcccatcatagtggggcttacagaggtcaggaagtaaacctggacacattatggcccacaatgggaccattggatccatagaccaagtcctggttatcttccaattccctgagagcataattgacactgctgcactgctaagtggagccacccccacaatgggtccctagtctgtggtgtaagggctctcattgtgctataagacaaagggaaacctctgacactgactcaatcctggccaaatcagaaatcatagtgtgtcccgggg-tgcgtcttgag---
i manLeu1.NW_012107142v1       I 36 C 0
s colAng1.NW_012115566v1        2810975 299 -   3067355 tgcccagatgtccacagcaccagcatgtctc-aatcacagtggagtttacagaggccggaaagtaaacctggacacattatggcccacaatgggaccactggttccatagacccagctctggttatcttccaattccctgagtgcattattgacattgatgcactggcagctgaagtaacccccacaccgggtgcctagtctgtggagtaagggctgtcattgtgctgaaggccaaaaggaaacctctgacactgtccccatcctggccaaatcaaaaatcatagtatgtccc-agg------gttg-----
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         344795 309 -   1771730 tgccctgatgcccacagcactatcata-cccccaccccagtggggtttatggaggtcaaggagtaaacctggacacattatggcccac-ctgggaccactggatccatagaccgagcctacgttatctctcatttccctgagtgcataactgaaactgatgacctgcttagtggaatcacccccacactgagcccctagtctgtggcataagggctctcattgtgctgaaagtcaaagggaaacttctgtcactgccctcatcctgggcaaatcaaaaatcgtagtgtgttcc-agtgtgggtcttcttgta
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         425474 309 -    457564 tgcccagatgcccacagcactatcgtg-cccccatcacagtggggcttacggaggccagggagtaaatctggacacattttggcccac-atgggaccactggatccataggccgagcccgggttatctcccaattccctgagtgcataattgacacagacgccctgctaagtggagtcacccccacactgagtccctagtctgtggcataagggctcccattttgctgaaagccaaagggaaacctctgacactgtccccatcctgggcagatcaaaaatcatagtgtgttcc-agtgtgggtcttcttgtg
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002535v1            440   0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=1184832.000000
s hg38.chr6_GL000254v2_alt      1032891 217 +   4827813 aaggacactgcaagtatt-g--tgggggtcacaccaccattacaaagctgaaggaggcggggtggtgttgaggctgcctattgtctccgtgtaatccagcaatctgtccctgaggaagcctagtgaggcctaaagaatgaa-tgagattactccagatatggccaagtaggagttataagtgcagcttttgtgctgtctggatatcactggtagagcagat
s panTro5.chr6                 29995436 217 + 175400573 aaggacactgcaagtatt-g--tgggggtcacaccaccattacaaagctgaaggaggcggggtggtgttgaggctgcctattgtctccgtgtaatccagcaatctgtccctgaggaagcctagtgaggcctaaagaatgaa-tgagattactccagatatggccaagtaggagttataagtgcagcttttgtgctgtctggatatcactggtagagcagat
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30229177 217 + 173848474 aaggacactgcaagtatt-g--tgggggtcacaccaccattacaaagctgaaggaggcggggtggtgttgaggctgcctattgtctccgtgtaatccagcaatctgtccctgaggaagcctagtgaggcctaaagaatgaa-tgagattactccagatatggccaagtaggagttataagtgcagcttttgtgctgtctggatatcactggtagagcagat
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6031561 217 +   6154872 aaggacactgcaagtatt-g--tgggagtcacaccaccattacaaagctgaaggaggcggggtggtgttgaggctgcctattgtttccatgtaatccagcaatctgtccctgaggaagcctagtgaggcctaaagaatgaa-tgagattactccagatatggccaagtaggagttataagtgcagcttttgtgctgtctggatatcactggtagagcagat
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74713049 217 + 122973662 gaagacactgaaagtatt-g--tgggagtcgcaccaccgttggagagctgaaggaggcggggtggtgttggggctgtctattgtctctacacaatccagcaacctgtccctgaggaagcctgatgaggactaaagaatgaa-tgggattactccagttctggccaaataggagtaataattgcagattttatgttgtctggatatcactggtagagcagat
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30264096 217 + 172585720 gaagacactgcaagtatt-t--tgggggttgcaccaccaatagagagctgaaggatgaggggtggtgttgaggctgtctattgtgtctatgtaattcagcaacctgtccccgaggaagcctgatgaggtctaaagaatgaa-tgaaattactccaggtatggccaagtaggagttataattgcaacttctatgttgtctgaatatcactgatagagcagat
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    95021 215 +    231697 aaagacgctgaaagaact-ggaggggggttgcaccaacgttagagagctgaaggatgcagggtggtgttgggg----ctattgtctctacgtaatccagtaacctgtacctgaggaagcctgacgaggcctaaagaatgaa-ctagattactccaggtatgaccaagtaggagttatcattgcagcttttatgttgtctggatatcactggtagagcaagt
i macFas5.chr4_KE145577_random C 0 I 143
s cerAty1.NW_012002535v1         177338 214 -    863181 gaagacactgaaagtatt----tgggggttgcaccaccattagagagctgaagcatgtggggtggtgttgggctt--ctattgtctctacgtaatccagcaacctgtccctgaggaagcctgataaggtctaaagaatgaa-tgagattactctaggtatggccaagtaggagttataattgcagcttttatgttgtctggctatcactggtagagcagat
i cerAty1.NW_012002535v1       n 0 C 0
s chlSab2.chr17                29186356 217 -  71996105 gaagacattgcaagtatt-t--tggggtttgcaccaccaatagagagctgaaggatgaggggtggtgttgaggctgtctattgtgtctatgtaattcagcaacctgtccccgaggaagcctgaggaggtctaaagaatgaa-tgaaattactccaggtatggccaagtaggagttataattgcaacttttatgttgtctgaatatcaatgatagagcagat
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          70490 217 -    735854 gaagacactgaaagtactgt--ggggggtcacaccaacattacagagctgaagga-ggtggatgatgttggagctatctattatctctacgtaatccagcaacctgtcccttaggaagcctgatgaggcctaaagaatgaa-tgagattactccaggtacggccaagtaggagttacaattgcagcttttatgttgtctggatatcactggtagagcagat
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2811274 218 -   3067355 gaggacactgcaagtatt-g--tgggggtcacaccaccattagagggctgaaagatgaggggtggtgttgagtgtgcctattgtctccatgcaatccagcaatctgtccacaaagaagcctaactgggtctaaagaatggattaagattactccagacttggccaagtacaagttatacttgcagctgccatgctatcttgatatcactggtagggcagat
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         345104 215 -   1771730 gaagacagtgaaagtatt-g--tgggggtcacaccaccattagagacctaaaggatgcggggtggtgc-ggggttctctgttgtgtctacgtgatccacccacctgtccctgaggaagcctgatgagtcctaaagaatgaa-tgggattactccaggtatgaccaagtaggagttataactgcagcttttgtgttgtctg-atatcactggtagagcggac
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         425783 216 -    457564 gaagacagtgaaagtatt-g--tgggggtcacaccaccattagagtcctaaaggatgtggggtggtgctggggctgtctgaggtgtctacgtaatccacccacctgtccctgaggaagcctgatgagtcctaaagaatgaa-tgagattactccagatgtgaccaaataggagttctaattgcagcttttatgttgtctg-atatcactggtagagtggac
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=595090.000000
s hg38.chr6_GL000254v2_alt      1033108 123 +   4827813 taacaaagccttgggcacacagtgtgcagctgtggatttggtgagtgcatttctttccattccaattacaaaggggatat-ggagtgattcacattcatgtgggatccacaacacattgaatta
s panTro5.chr6                 29995653 123 + 175400573 taacaaagccttgggcacacagtgtgcagctgtggatttggtgagtgcatttctttccattccaattacaaaggggatat-ggagtgattcacattcatgtgggatccacaacacattgaatta
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30229394 123 + 173848474 taacaaagccttgggcacacagtgtgcagctgtggatttggtgagtgcatttctttccattccaattacaaaggggatat-ggagtgattcacattcatgtgggatccacaacacattgaatta
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6031778 123 +   6154872 taacaaagccttgggcacacagtgtgcagctgtggatttggtgagtgcatttctttccattccaattacaaaggggatat-ggagtgattcacattcatgtgcgatccacaacacattgaatta
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74713266 123 + 122973662 taataaaagcttgggcacacagcgtgcagctgtggatttggtgagtgcattgcttttctctgcaattagaaaggggatat-ggagtgattcacattcatgtgggatacacaatatatttattta
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30264313 123 + 172585720 taataaagcctcgggcacacagcatgtagctgtggatctggtgagtgcgttcctttccacttcaattagaaagtggatat-ggagtgattcacattcatgtgggatccacaaaacatctattta
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002535v1         177552 115 -    863181 taataaaacctcaggcacacagcgtgcagctgtggatttggtgagtgcatttctttccactcc--------agtggatat-ggagtgtttcacattcatgtggaatccataacacattggttta
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29186573 122 -  71996105 t-ataaagcctcgggcacacagcatgtagctgtggatctggtgagtgcgttcctttccacttcaattagaaagtggatat-ggagtgattcacattcatgtgggatccacaaaacatctattta
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          70707 123 -    735854 taataaaaccttgggaacacagcgtgcagctgtggatttggtgagtgcgttcctttcttctccagttagaaagagaatat-ggagtgattcacattcatgtgagatccaccacacatttattta
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2811492 124 -   3067355 taataaggcctcaggcacacagcatgcagctgtggatttggtaagtgcattcctttccattccaattagaaagtagatataagagtgattcatatttatgtgggatccacaatacatttaatta
i colAng1.NW_012115566v1       C 0 I 1295
s cebCap1.NW_016107755v1         345319 122 -   1771730 taataaagccttgggcacacagcgtgcagctgtggatttggtgagtgcgttct-ttcctctccaattagaaagtggatat-ggagtgattcacattcatgtgggatccacaacacatgtattta
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         425999 123 -    457564 taataaagccttgggcacacagtatgcagctgtggatttggtgagtgcattccgttcttcttcaattagacagtggatat-ggagtgattcacattcatgtgggatccacaccacatgtattga
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    95236 143 +    231697 I

a score=842584.000000
s hg38.chr6_GL000254v2_alt      1033231 214 +   4827813 tagtttgcctcaggactt-ttgtaactcccctgtcctctatagtatagtcttatgactatactagacatactggatatcctaaaggatattaaatcagctcatttcatttacaacttc-atgttgactggggcgaatgagcagcagg-tagaaagtgcactggcatcgttggcaaaacatttgcacttcagaaggtgaagataaaccttacagagct
s panTro5.chr6                 29995776 214 + 175400573 tagtttgcctcaggactt-ttgtaactcccctgtcctctatagtatagtcttatgactatactagacatactggatatcctaaaggatattaaatcagctcatttcattcacaacttc-atgttgactggggcgaatgagcagcagg-tagaaagtgcactggcatcgttggcaaaacatttgcacttcagaaggtgaagataaaccttacagagct
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30229517 214 + 173848474 tagtttgcctcaggactt-ttgtaactcccctgtcctctatagtatagtcttatgactatactagacatactggatatcctaaaggatattaaatcagctcatttcattcacaacttc-atgttgactggggcgaatgagcagcagg-tagaaagtgcactggcatcgttggcaaaacatttgcacttcagaaggtgaagataaaccttacagagct
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6031901 214 +   6154872 tagtttgcctcaggactt-ttgtaactcccctgtcctctatagtatagtcttatgactatactagacatactggatatcctaaaggataataaatcagctcatttcattcacaacttc-atgttgactggggcgaatgagcagcagg-tagaaagtgcactggcatcgttggcaaaacatttgcacttcagaaggtgaagataaaccttacagagct
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74713389 209 + 122973662 tcgtttgcctcagggcta-ttgtaactcccctgcctgctatagtata-----aagactacactagacatactggatatcctgtaggatattaaatcagctcatttcattgacaatttc-atgttgactggggtcgatgagcagcagg-tagaaagtgaactggagtccttggcaaaacacatgtactccagaaggtgaaggtaaacgttacagagtt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30264436 209 + 172585720 tagtttgtctcagggcta-ttgtaactcccctgccctctatagcatagtcttaagactgtactagccacactgga-----tataggatattaaatcagctcgttttattgacaacttc-ctgttgactggggtggatgagcagcagg-taagaggtgcactgtagtccttggcaaaacatatgcaatccagaatgtgaagacaaactttacagagct
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002535v1         177667 214 -    863181 tagtttgtattagggcta-tggtaactcccctgccctatatagtatagtcttaagactatactagacatactggatatcctatgggatattaaatcagctcatgtcattgacactttc-atgttgactggagtggatgagcagcagg-tagaaaatgcactggagtccctggcaaaacacatgcactccagaaggtgaagataaaccttacagagct
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29186695 209 -  71996105 tagtttgtctcagggctatttgtaactcccctgccctctatagcatagtcttaagactgtactagccacactgga-----tataggatattaaatcagctcgttttattgacaacttc-ctgttgactggggtggatgagcagcagg-taagaggtgcactgcagtccttgg-aaaacacatgcaatccagaatgtgaagacaaactttacagagct
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          70830 209 -    735854 tagtttgcctcacagcta-ttgtaactcccctacccactatagtaca-----aagactacactaaacatactggatatcctataggatattaaatcagttcatttcattgacaatttc-atgttgactagggtggatgagcagcagg-tagaaagtgcactagagtccctggcaaaacaagtgcaccccagaaggtgaaggtaaaccttacagagct
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         345441 214 -   1771730 tagtctgcctcacggtta-ttgtaactcccctcccctctatagtgtagtcttcagactgtgctagacatactggatgtcctgtgggatattgaatcagttcatttcattgacaacttc-atgttgactggggtggatgagcagaaagtcagaaagtgcactggagtccttggcaaaacacatgc-ctccagaaggtgaagataaaccttacagagct
i cebCap1.NW_016107755v1       C 0 I 3680
s aotNan1.NW_018509740v1         426122 214 -    457564 tagtctgcctcatggcta-ttgtaactcccctcccctctatagtatagtcttcagactgtactagacatactggatgtcctataggatattaaatcagctcatttcattgacaacttcaatgctgactggggttgatgagcagcagg-cagaaagtgcactggagtccttggcaaaacacatgc-ctccagaagatgaagataaaccttacagaact
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2811616 1295 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    95236 143 +    231697 I

a score=12690.000000
s hg38.chr6_GL000254v2_alt      1033445 3 +   4827813 tca
s panTro5.chr6                 29995990 3 + 175400573 tca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30229731 3 + 173848474 tca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6032115 3 +   6154872 tca
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74713598 3 + 122973662 tca
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30264645 3 + 172585720 tca
i rheMac8.chr4                 C 0 I 449
s cerAty1.NW_012002535v1         177881 3 -    863181 tca
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29186904 3 -  71996105 tca
i chlSab2.chr17                C 0 I 448
s manLeu1.NW_012107142v1          71039 3 -    735854 tca
i manLeu1.NW_012107142v1       C 0 C 0
s aotNan1.NW_018509740v1         426336 3 -    457564 tca
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         345655 3680 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2811616 1295 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    95236 143 +    231697 I

a score=26526.000000
s hg38.chr6_GL000254v2_alt      1033448 15 +   4827813 ggaaaggtcactgta
s panTro5.chr6                 29995993 15 + 175400573 ggaaaggtcactgta
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30229734 15 + 173848474 ggaaaggtcactgta
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6032118 15 +   6154872 ggaaaggtcactgta
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74713601 15 + 122973662 agagtggccactgaa
i nomLeu3.chr1a                C 0 C 0
s cerAty1.NW_012002535v1         177884 15 -    863181 agagtggccactgaa
i cerAty1.NW_012002535v1       C 0 C 0
s manLeu1.NW_012107142v1          71042 15 -    735854 agaatggccactgaa
i manLeu1.NW_012107142v1       C 0 C 0
s aotNan1.NW_018509740v1         426339 15 -    457564 gaagtggccactgaa
i aotNan1.NW_018509740v1       C 0 I 35
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         345655 3680 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2811616 1295 -   3067355 I
e chlSab2.chr17                29186907 448 -  71996105 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    95236 143 +    231697 I
e rheMac8.chr4                 30264648 449 + 172585720 I

a score=24684.000000
s hg38.chr6_GL000254v2_alt      1033463 17 +   4827813 gtgaagttttatgagt----------c
s panTro5.chr6                 29996008 17 + 175400573 gtgaagttttatgagt----------c
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30229749 17 + 173848474 gtgaagttttatgagt----------c
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6032133 17 +   6154872 gtgaagttttatgagt----------c
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74713616 27 + 122973662 gtgaagttttatgggtgaacaagtgcc
i nomLeu3.chr1a                C 0 C 0
s cerAty1.NW_012002535v1         177899 27 -    863181 gtgaagttttatgggcaaacaaaggcc
i cerAty1.NW_012002535v1       C 0 C 0
s manLeu1.NW_012107142v1          71057 27 -    735854 gtgaagttttatgggtgaacaacggcc
i manLeu1.NW_012107142v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         426354 35 -    457564 I
e cebCap1.NW_016107755v1         345655 3680 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2811616 1295 -   3067355 I
e chlSab2.chr17                29186907 448 -  71996105 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    95236 143 +    231697 I
e rheMac8.chr4                 30264648 449 + 172585720 I

a score=139510.000000
s hg38.chr6_GL000254v2_alt      1033480 73 +   4827813 cagtgtttaggggaatgccaggggtgtcccctcctaggtaaattacaaagtgttgcattttgcatccttactg
s panTro5.chr6                 29996025 72 + 175400573 cagtgtttaggggaatg-caggggtgtcccctcctaggtaaattacaaagtgttgcattttgcatccttactg
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30229766 72 + 173848474 cagtgtttaggggaatg-caggggtgtcccctcctaggtaaattacaaagtgttgcattttgcatccttactg
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6032150 72 +   6154872 cagtgtttaggggaatg-caggggtgtcccctcctaggtaaattacaaagtgttgcattttgcatccttactg
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74713643 71 + 122973662 aagtgtttaggggaatg-caggtgtgtcccctccaaggtaaaagacaaactgtttcatcctgcatcctcacc-
i nomLeu3.chr1a                C 0 C 0
s cerAty1.NW_012002535v1         177926 71 -    863181 aagtatttaggggaatg-caggtgcatcccctcccaggttaaacacaaactgttgcatcttgcattctcacc-
i cerAty1.NW_012002535v1       C 0 C 0
s manLeu1.NW_012107142v1          71084 71 -    735854 aagtgtttaggggaatg-caggtgtgtcccctgcaaggtaaaatacaaactgtttcatcttgcatcctcacc-
i manLeu1.NW_012107142v1       C 0 C 0
s aotNan1.NW_018509740v1         426389 72 -    457564 aagtgtttaagggaatt-caggtgtgtcccctccaaggtaaaatacaaactgtcttatcttgcatcctcacca
i aotNan1.NW_018509740v1       I 35 I 41
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         345655 3680 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2811616 1295 -   3067355 I
e chlSab2.chr17                29186907 448 -  71996105 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    95236 143 +    231697 I
e rheMac8.chr4                 30264648 449 + 172585720 I

a score=15495.000000
s hg38.chr6_GL000254v2_alt      1033553 16 +   4827813 caaaaaaagaaagca---------------c
s panTro5.chr6                 29996097 31 + 175400573 caaaaaaagaaagcacactacctggtgagcc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30229838 31 + 173848474 caaaaaaagaaagcacactacctggtgagcc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6032222 31 +   6154872 caaaaaaagaaagcacactccccggtgagcc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74713714 31 + 122973662 tgaaggcaggaagcacactgcctgatgagcc
i nomLeu3.chr1a                C 0 C 0
s cerAty1.NW_012002535v1         177997 16 -    863181 agaaggaaggatgcac---------------
i cerAty1.NW_012002535v1       C 0 n 0
s manLeu1.NW_012107142v1          71155 16 -    735854 agaaggaaggaagcac---------------
i manLeu1.NW_012107142v1       C 0 I 15
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         426461 41 -    457564 I
e cebCap1.NW_016107755v1         345655 3680 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2811616 1295 -   3067355 I
e chlSab2.chr17                29186907 448 -  71996105 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    95236 143 +    231697 I
e rheMac8.chr4                 30264648 449 + 172585720 I

a score=41938.000000
s hg38.chr6_GL000254v2_alt      1033569 14 +   4827813 tcttggagttctga
s panTro5.chr6                 29996128 14 + 175400573 tcttggagttctga
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30229869 14 + 173848474 tcttggagttctga
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6032253 14 +   6154872 tcttggagttctga
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74713745 14 + 122973662 tcttagagttctga
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30265097 14 + 172585720 tctttgagttctga
i rheMac8.chr4                 I 449 C 0
s cerAty1.NW_012002535v1           3051 14 -    863181 tctttgagttctga
i cerAty1.NW_012002535v1       n 0 C 0
s chlSab2.chr17                29187355 14 -  71996105 tctttgagttctga
i chlSab2.chr17                I 448 C 0
s manLeu1.NW_012107142v1          71186 14 -    735854 tctttgagtcctga
i manLeu1.NW_012107142v1       I 15 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         426461 41 -    457564 I
e cebCap1.NW_016107755v1         345655 3680 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2811616 1295 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    95236 143 +    231697 I

a score=588649.000000
s hg38.chr6_GL000254v2_alt      1033583 171 +   4827813 cgacagcacattccacatgtagaaatgttgctttggcccacactctaggtgacataggaggaggccagcttcaagtgaggcctacacaggaaagcaccctgcagcagatacaggctgcggt----gcagccaccatccctcagacctcttggtactggaaggggcaggggtgggg
s panTro5.chr6                 29996142 171 + 175400573 cgacagcacattccacatgtagaaatgttgctttggcccacactctaggtgacataggaggaggccagcttcaagtgaggcctacacaggaaagcaccctgcagcagatacaggctgtggt----gcagccaccatcccccagacctcttggtactggaaggggcaggggtgggg
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30229883 171 + 173848474 cgacagcacattccacatgtagaaatgttgctttggcccacactctaggtgacataggaggaggccagcttcaagtgaggcctacacaggaaagcaccctgcagcagatacaggctgtggt----gcagccaccatcccccagacctcttggtactggaaggggcaggggtgggg
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6032267 171 +   6154872 caacagcacattccacatgtagaaatgttgctttggcccacactctaggtgacacaggaggaggccagcttcaagtgaggcctacacaggaaagcaccctgcagcagatacaggctgcggt----gcagccaccatccctcagacctcttggtactggaaggggcaggggtgggg
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74713759 175 + 122973662 cgacaccacattccacatctaggtatgttgctttggccaacactctaggtgacataggaggaggccaccttcatgtggggcccacacaggaaaggaccctgcagcagatccaggctgtggtgcaagcagccaccatccctcagaccccctggtgctggtggggccagtggtgggg
i nomLeu3.chr1a                C 0 I 62379
s rheMac8.chr4                 30265111 175 + 172585720 cgacaccacattccacatctaggtaagttgctttggcccacactctaggtgacataggaggaggccagcttcaagtgtggcctacacagggaaggaccctgcagcagatccaggccacggtgcaagcagccagcatccctcagatcccatggtgctggtggtgccagtggtaggg
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002535v1           3065 175 -    863181 cgacaccacattccacctctaggtaagttgctttggcccacactctaggtgacataggaggaggccagcttcaagtgtggcctacacagggaaggatcctgcagcagatccaggccacagtgcaagcagccagcatccctcagatcccatggtgctggtggtgccagtggtaggg
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29187369 175 -  71996105 cgacaccacattccacatctaggtaagctgctttggcccacactctaggtgacatagaaggaggccagcttcaagtgtggcctacacagggagggaccctacagcagatccaggccacagtgcaagcagccagcatcccttagatcccatggtgctggtggtgccagtggtaggg
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          71200 175 -    735854 cgacaccacattccacatctaggcattttgctttggcccacactctaggtgacataggaggaggccaggttcaagtggggtccacacagggaaggatcctgcagcagatccaggccatggtgcaagcagccaccatccctcagactccctggggctggtggtgctagtggtaggg
i manLeu1.NW_012107142v1       C 0 C 0
s aotNan1.NW_018509740v1         426502 175 -    457564 tgacaccacattccacatctaggtattttgccttggcccacactctaagtgacataggaggaggccagcttcaagtgggacctgcacaggaaaagatcctgcagcagattcaggccatggtgcaagcagccaccttccctcagacttcctggtgctggtggtgccagtggtgggg
i aotNan1.NW_018509740v1       I 41 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         345655 3680 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2811616 1295 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    95236 143 +    231697 I

a score=341930.000000
s hg38.chr6_GL000254v2_alt      1033754 123 +   4827813 aaagatgcaggatggagctgaaccaagcagcagtgggagagtcatggtggagggcctgggatctggagtaagatcatgtcatccacagcagagacatg-gctccccattagaagcaacttttag
s panTro5.chr6                 29996313 123 + 175400573 aaagacgcaggatggagctgaaccaagcaccagtgggagagtcatggtggagggcctgggatctggagtaagatcatgtcatccacagcagagacctg-gctccccattagaagcaacttttag
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30230054 123 + 173848474 aaagacgcaggatggagctgaaccaagcaccagtgggagagtcatggtggagggcctgggatctggagtaagatcatgtcatccacagcagagacctg-gctccccattagaagcaacttttag
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6032438 123 +   6154872 aaagatgcaggatggagctgaaccaagcagcagtgggagagtcatggtggagggcctgggatctggagtaagatcatgtcatccacagcagagacatg-gctccccattagaagcaacttttag
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30265286 124 + 172585720 aaagatgcaggatggagctgaaccaagcaccagtgggagagtcacagtggagggtctcaattctggagtaagatcaagtcatccacagcagagacatatggcccctgtcagaagcaacttttag
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002535v1           3240 124 -    863181 aaagatgcaggatggagctgaaccaagcaccagtgggagagtcacaatggagggtctcaattctagagtaagatcaagtcatccacagcagagacatatggcccctgttagaagcaacttttag
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29187544 124 -  71996105 aaagatgcaggatggagctgaaccaagcaccagtgggagagtcacagtggagggtctcaattctggagtaagatcaagtcATCCACAGCAGAGACATATGGCCCCTGTCAGAAGCAACTTTTAG
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          71375 123 -    735854 aaagatgcaggatggagctgaaccaagcaccagtgggagagtcacattggagggcctagaatctggagtaagatcatgtcatccacagcagagacata-gccccgtgttagaagcaacttttag
i manLeu1.NW_012107142v1       C 0 C 0
s aotNan1.NW_018509740v1         426677 122 -    457564 aaaaacgcagaatggagctgaaccaagcaccagtgggagagtcacagtggagggcctgaattctagagtaagatcataatacccacaacagagacata--gtccctgtaagaagtggtttttaa
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         345655 3680 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2811616 1295 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    95236 143 +    231697 I
e nomLeu3.chr1a                74713934 62379 + 122973662 I

a score=528049.000000
s hg38.chr6_GL000254v2_alt      1033877 178 +   4827813 tgttcctggtcctgattcgatagaatgcttaaccacaggacaccaagcaacgatgtgattccaagtacctgtgtgaattggcttctgtgtgacccagaaagtcatagattggacaggcccaacagcattcatcatgaggtgaaaatggtccacctgggTTGTG------------------Cttgaatcccatgtt
s panTro5.chr6                 29996436 178 + 175400573 tgttcctggtcctgattcgatagaatgcttaaccacaggacaccaagcaacgatgtgattccaagtacctgtgtgaattggcttctgtgtgacccagaaagtcatagattggacaggcccaacagcatccatcatgaggtgaaaatggtccacctgggTTGTG------------------Cttgaatcccatgtt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30230177 178 + 173848474 tgttcctggtcctgattcgatagaatgcttaaccacaggacaccaagcaacgatgtgattccaagtacctgtgtgaattggcttctgtgtgacccagaaagtcatagattggacaggcccaacagcatccatcatgaggtgaaaatggtccacctgggTTGTG------------------Cttgaatcccatgtt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6032561 178 +   6154872 tgttcctggtcctgattcgatagaatgcttaaccacaggacaccaagcaacgatgtgattccaagtacctgtgtgaattggcttctgtgtgacccagaaagtcatagattggacaggcccaacagcatccatcatgaggtgaaaatggtccacctgggTTGTG------------------Cttgaatcccatgtt
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30265410 180 + 172585720 tgtttcttgtcctgattagatagaatgcttgaccacaggacatcaagcaatgatgtgattccaagtgtctttctg----------------acccacaaagtcgtaaattgcgcaggcccaacagcattcatcaggaaatgaaaatggtccacccgggTTGAGTTTGAATCCCATGTTGACCCCGAatcccatgtt
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002535v1           3364 180 -    863181 tgtttcttgtcctgattagatagaatgcttgaccacagaacatcaagcaatgatgtgattccaagtgtctttctg----------------acccacaaagtcataaattgcgcaggcccaacagcattcatcaggaaatgaaaatggtccacccgggTTGAGTTTGAATCCCATGTTGACCCCGAATCCCATGTT
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29187668 180 -  71996105 TGTTTCTTGTCCTGATTAGATAGAATGCTTGACCACAGGACATCAAGCAATGATGTGATTCCAAGTGTCTTTCTg----------------acccacaaagtcataaattgcgcaggcccaacagcattcatcaggaaatgaaaatggtccactcgggTTGAGTTTGAATCCCATGTTGACCCtgaatcccatgtt
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          71498 162 -    735854 agttcctcgtcctgattagatagaatgcttgacctcaggacaccaagcaactatgtgattccaagtgtctgtgtg----------------acccacaaagtcatagattgtacagacccaacagcatccatcatgaggggaaaatggtccacctggattgag------------------cttgaatcccatgtt
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2812911 178 -   3067355 tgttcctggccctgataagatagaatgcttgaccataggaaaccaagcaactatatgattccaagtgcccatatgaatttgcttctgggtaactcatgaagtaagagattggacatgcccaatagtatccagaatgagatgaaaatggtccaccggggttgag------------------cctgaattccacatt
i colAng1.NW_012115566v1       I 1295 C 0
s aotNan1.NW_018509740v1         426799 162 -    457564 tgttactggtcctgatttcatacactgcttgaccacaggacaccaaggaactatgtggttccaagtgcccgtgtg----------------acccacaaagtcacagattgcacgggcccaacagcatccatcatgaggtgaaaatggcccacctgggttgag------------------cttgaatcccatgtg
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         345655 3680 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    95236 143 +    231697 I
e nomLeu3.chr1a                74713934 62379 + 122973662 I

a score=949194.000000
s hg38.chr6_GL000254v2_alt      1034055 235 +   4827813 gacacccccagaaaacacccaagtctgaagcagcactgaacaaccaaacagacaaatggaagttagccagccttcactatgggtcaatgcaggcctggtaggatgggcacatgaatggagcaagcacagtggcaggcatgaggct------------------------------------------------------------------------------------------acatatggggccagaagtactgactccccattatcaagacagatccagctgctgc--------cacctctgaatgtccaactcatcagcatttgaggc
s panTro5.chr6                 29996614 235 + 175400573 gacacccccagaaaacacccaagtctgaagcagcactgaacaaccaaatagacaaatggaagttagccagccttcactatgggtcaacgcaggcctggtaggatgggcacatgaatggagcaagcacagtggcaggcatgaggct------------------------------------------------------------------------------------------acatatggggccagaagtactgactccccattatcaagacagatccagctgctac--------cacctctgaatgtccaactcatcagcatttgaggc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30230355 235 + 173848474 gacacccccagaaaacacccaagtctgaagcagcactgaacaaccaaatagacaaatggaagttagccagccttcactatgggtcaacgcaggcctggtaggatgggcacatgaatggagcaagcacagtggcaggcatgaggct------------------------------------------------------------------------------------------acatatggggccagaagtactgactccccattatcaagacagatccagctgctac--------cacctctgaatgtccaactcatcagcatttgaggc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6032739 235 +   6154872 gacacccccagaaaacacccaagtctgaagcagcactgaacaaccaaatagacaaatggaagttagccagccttcaccatgggtcaatgcaggcctggtaggatgggcacatgaatggagcaagcacagtggcaggcatgaggct------------------------------------------------------------------------------------------acatatggggccagaagtactgactccccattatcaagacagatccagctgctgc--------cacctctgaatgtccaactcatcagcatttgaggc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74776313 235 + 122973662 gacacccacagaaaacacccaagtctgaagtgacagtgaacaaccaaacagacaaatggaagttagccagccttcaccatgggtcagcccaggcctggtaggaagggtgcatgaatggagcaaccacagaggcaggcatgaggct------------------------------------------------------------------------------------------atgtatggggccaacagcactgactcccccctaccaaggcagatccacctgctgc--------cacctctgaatgtccaactcattagcatttgaggc
i nomLeu3.chr1a                I 62379 C 0
s rheMac8.chr4                 30265590 234 + 172585720 gacccccacagaaaacacccaagtccgaagtggcactgaacaagcaaacagacaaatggaagttagct-gccttcaccatgggtgagcccaggcctggtaggatgggcgcatgaatggagcagccacagtggcagacatgaggcc------------------------------------------------------------------------------------------atgtatggggccagcagcactgactcccccctaccaaggcagatccagctgctgc--------cacctctgaatgtccaactcatcggcatttgaggc
i rheMac8.chr4                 C 0 C 0
s cerAty1.NW_012002535v1           3544 324 -    863181 GACCCCCACAGAAAACACCCAAGTCCAAAGTGGCACTGAACAAGCAAACAgacaaatggaaattagct-gccttcaccatgggtgagcccaggcctggtaggatgggcgcatgaatggagcagccacagtggcagacatgaggccatgtatggggccagcagcactgactcccccctaccaaggcagatccagctgccgccacctctgaatgtccaactcatcggACATgaggccatgtatggggccagcagcactgactcccccctaccaaggcagatccagctgccgc--------cacctctgaatgtccaactcatcggcatttgaggc
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29187848 234 -  71996105 gacccccacagaaaacacccaagtctgaagtggcactgaacaagcaaacagacaaatggaagttagct-gccttcaccatgggtgagcccaggcctggtaggatgggtgcatgaatggagcaaccacagtggcagacgtgaggcc------------------------------------------------------------------------------------------atgtatggggacagcagcactgactcccccctaccaaggcagatccagctgctgc--------cacctctgaatgtccaactcatcggcatttgaggc
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          71660 243 -    735854 tacacacacagaaagcagccaagtctaaagtggcactgaacagctaaacagacaaatggcagttagccagccttcaccatgggtcagcctaggcctagtaggatgagcgcatgaatggagcaaccatggtggcaagcatgaggct------------------------------------------------------------------------------------------acgtatggggccagcagcactgactcccccatgccaaggcagatccagctgctgccacctcagcacctctgaatgcccaactcaacagcatttgaggc
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2813089 235 -   3067355 gatacccacagaaaacacccatccctgaagtggtactgaacaaccaagcagaataattgaagttagccagcactcaccataggtcaccccaggcctggtaggaagggaacatgaatgaaacaaccacagtggcaaggatgaggcc------------------------------------------------------------------------------------------acgaatgggtccagcagttctgactcccccttaccaaggtagatccagcttctgt--------tacctctgaacgtccaaatcatcagcattagaggt
i colAng1.NW_012115566v1       C 0 C 0
s aotNan1.NW_018509740v1         426961 234 -    457564 gacaccttcagaaaacacccaagtctgaagtggcactgaacaaccaaacagac-aatggaagttagccggccctcactgtgggtcagcccaggcctggtaggatggacacatgaatggagcagccacagtggcaggcatgaggct------------------------------------------------------------------------------------------acatatgggaccagaagcactgacttccacctaccaaggcagacccagcttctgc--------cacctctgaatgtccaatgcatcagcattttgagc
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         345655 3680 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    95236 143 +    231697 I

a score=140977.000000
s hg38.chr6_GL000254v2_alt      1034290 32 +   4827813 ---ccaccatgtgccctagtggggcactatttctt
s panTro5.chr6                 29996849 32 + 175400573 ---ccacgatgtgccctagtggggtactatttctt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30230590 32 + 173848474 ---ccacaatgtgccctagtggggtactatttctt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6032974 32 +   6154872 ---ccaccatgtgccctagtggggcactatttctt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74776548 32 + 122973662 ---ccatgatgtgccctagtggggcactgtttctt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30265824 32 + 172585720 ---ccatgatatgccctagtggggcactgcttctt
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    95379 31 +    231697 ---ccaccatgctcagTTGTGGggcacta-ttttt
i macFas5.chr4_KE145577_random I 143 C 0
s cerAty1.NW_012002535v1           3868 32 -    863181 ---ccatgatgtgccctagtggggcactgcttctt
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29188082 32 -  71996105 ---ccatgatacgccctagtggggcactgcttctt
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          71903 32 -    735854 ---ccatgatgtgccctagtggggcaatatttctT
i manLeu1.NW_012107142v1       C 0 I 7900
s colAng1.NW_012115566v1        2813324 32 -   3067355 ---taatgatttgccctagtggggcactatttctt
i colAng1.NW_012115566v1       C 0 C 0
s aotNan1.NW_018509740v1         427195 34 -    457564 atatcatg-tatgctctagtggggcactatttctt
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         345655 3680 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=906957.000000
s hg38.chr6_GL000254v2_alt      1034322 219 +   4827813 taggtgactaactagccactatgtaacaagttgactacatttagctacttccatcctagaagggcctgaggttcatcttcacaggggtaggctcatattccatgggtgagttttcctgtcctgctctcggacactcagccagcaccactctctgggtgctgttgacattcctgatccacaggctaggtggtgctcccaacccagtatctgcctgaagga
s panTro5.chr6                 29996881 219 + 175400573 taggtgactaactagccactatgtaacaagttgactacatttagctacttccatcctagaagggcctgaggttcatcttcacaggggtaggctcatattccatgggtgagttttcctgtcctgctctcggacactcagccagcaccactctctgggtgctgttgacattcctgatccacaggctaggcggtgctcccaacccagtatctgcctgaagga
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30230622 219 + 173848474 taggtgactaactagccactatgtaacaagttgactacatttagctacttccatcctagaagggcctgaggttcatcttcacaggggtaggctcatattccatgggtgagttttcctgtcctgctctcggacactcagccagcaccactctctgggtgctgttgacattcctgatccacaggctaggcggtgctcccaacccagtatctgcctgaagga
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6033006 219 +   6154872 taggtgactaactagccactatgtaacaagttgactacatttagctacttccatcctagaagggcctgaggttcatcttcacaggggtaggctcatattccatgggtgagttttcctgtcctgctctcggacactcagccagcaccactctctgggtgctgttgacactcctaatccacaggctaggcggtgctcccaacccagtatctgcctgaagga
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74776580 219 + 122973662 taggtaactacctagctactaagtgacaagttgactacatttagctacctccatcctggaagggccacaggttcatcttcacaggattaggcacctattctgtgggtgggtttttctgtcctgctctcagacactcagccagcaccactctctgggggctgttcacattcctgatccgcaggctaggcggtgctcctagcccattatctgcctgaagga
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30265856 217 + 172585720 tagttgactaactagccactaagtaacaagttgactacatttagcaacttccatcctggaagggccagaggttcatcttcacagggttaggcacctattccatgggtgggttttcctgtcctgctctcagaca--cagccagcaccactttccgggtgctgttgacgttcctgatccacaggctaggcagtgctcttagcccattatctgcctgaaaga
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    95410 210 +    231697 taggtgactaactagccactaagtaacaaggtgacaacatttagctattttcatcctgaaagggccagaggttcatcttca------taggctcctattccatgggt--gttttcctgtcctgctctcagacactcagccagcaccactctctgggtgctgttgacattcttggtctgcaggccaggcagtgctcctagcccatta-ctgcctgaaaga
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1           3900 217 -    863181 tagttgactaactagccactaagtaacaagttgactacatttagcaacttccatcctggaagggccagaggttcatcttcacagggttaggcacctattccatgggtgggttttcctgtcctgctctcagaca--cagccagcaccactttccatgtgctgttgacgttcctgatccacaggctaggcggtgctcttagcccattatttgcctgaaaga
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29188114 217 -  71996105 tagttgactaactagccactaagtaacaagttgactacatttagcaacttccatcctggaagggccagaggttcatcttcacagggttaggctcctattccatgggtgggttttcctgtcctgctctcagaca--cagccagcaccactttccgggtgctgttgacgttcctgatccacaggccaggcagtgctcttagcccattatctgcctgaaaga
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2813356 215 -   3067355 taggtg----aatagccactaagtgacaagttgactacattgagccacttccgtcctggaagagccagaggttcatcttcacagagataggcacctattccatgagtgagttttcctgtcctgctctcagaccatcagtgggcactactctccaggggctgttgacattcctgatccacaggcttggtattgctctcagcgcagtatctgcttgggaga
i colAng1.NW_012115566v1       C 0 C 0
s aotNan1.NW_018509740v1         427229 215 -    457564 taggtg----actagccactaagtaacaaggtgactacatttagacacttccatcctggaagggccacaggttcatcttcacagggttaggcacctattctatgggtatgttttcctgtcctgctctcagacactcagccagcaccactctccgggtgctgatgacattcctgatttgtggtctaggtggtgctcctggctcattatctgccagaaaga
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         345655 3680 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          71935 7900 -    735854 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=3460452.000000
s hg38.chr6_GL000254v2_alt      1034541 716 +   4827813 cccacttggcagggaa--agttccagtgtttccgtggctatgggtttcactgatctgatcacc----atctgcaccacccaggggctgccagccacaaggaatgctggaaatgtcttctacaggcaaaactcagtgtcatcctggaggaagcactctgaggggtgggggccgtttttcaggacatggtgcattgtttgaatcagagacatctc-tacggtgctgtgttctcaataggaagaatatgtgggtctagaaaccgaaagttggaagcaggtttgtctccatgtccagtctcttagattcacccactggggtattttgcacgttttatctcccaactttgggctgttcagggcaggaggt----------------------ccttaaaaggagacacatgacagcccattgaactacacattatggttgtcaccagagaagtttggacagtatgtgcccagagaccagctggtgagaaaaggagtctcttcctctccaggtgcaggtaatagatcctgctctccaggaggaggcatggctactttcacacaatgagggcagaa---gtgtgtgtgtgagaaccagagatctacttgggggccttctggtttgccttgtccctttgtaaatgtgagcagaatcatccagcaatccagcctgagaggatttgatttccaagggcccagacctctcaggacaggaggtttgagccacactcctgggtaaTCaccc-aaggccccac
s panTro5.chr6                 29997100 716 + 175400573 cccacttggcagggaa--agttccagtgtttccgtggctatgggtttcactgatctgatcacc----atctgcaccactcaggggctgccagccacaaggaatgctggaaatgtcttctacaggcaaaactcagtgtcatcctggaggaagcactctgaggggtgggggccatttttcaggacatggtgcattgtttgaatcagagacatctc-tacagtgctgtgttctcaataggaagaatatgtgggtatagaaaccgaaagttggaagcaggtttgtctccatgtccagtctcttagattcacccactggggtattttgcacgttttatctcccaactttgggctgttcagggcaggaggt----------------------ccttaaaaggagacacatgacagcccattgaactacacattatggttgtcaccagagaagtttggacagtatgtgcccagagaccagctggtgagaaaaggagtctcttcctctccaggtgcaggtagtagatcctgatctccaggaggaggcatggctactttcacacaatgagggcagaa---gtgtgcgtatgaaaaccagagatctacttgggggccttctggtttgccttgtccctttgtaaatgtgagcagaatcatccagcaatccagcctgagaggatttgatttccaagggcccagacctctcaggacagaaggtttgagccacactcctgggtaaTCaccc-aaggccccac
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30230841 715 + 173848474 cccacttggcagggaa--agttccagtgtttccgtggctatgggtttcactgatctgatcacc----atctgcaccacccaggggctgccagccacaaggaatgctggaaatgtcttctacaggcaaaactcagtgtcatcctggaggaagcactctgaggggtgggggccatttttcaggacatggtgcattgtttgaatcagagacatctc-tacagtgctgtgttctcaataggaagaatatgtgggtatagaaaccgaaagttggaagcaggtttgtctccatgtccagtctcttagattcacccactggggtattttgcacgttttatctcccaactttgggctgttcagggcaggaggt----------------------ccttaaaaggagacacatgacagcccattgaactacacattatggttgtcaccagagaagtttggacagtatgtgcccagagaccagctggtgagaaaaggagtctcttcctctccaggtgcaggtagtagatcctgatctccaggaggaggcatggctactttcacacaatgagggcagaa---gtgtgtgtatgaaaaccagagatctacttgggggccttctgg-ttgccttgtccctttgtaaatgtgagcagaatcatccagcaatccagcctgagaggatttgatttccaagggcccagacctctcaggacagaaggtttgagccacactcctgggtaaTCaccc-aaggccccac
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6033225 715 +   6154872 cccacttggcagggaa--agttccagtgtttccgtggctatgggtttcactgatctgatcacc----atttgcaccacccaggggctgccagccacaaggaatgctggaaatgtcttctacaggcaaaactcagtgtcatcctggaggaagcactctgaggggt-ggggccgtttttcaggacatggtgcattgtttgaatcagagacatctc-tatggtgctgtgttctcaataggaagaatatgtgggtctagaaaccgaaagttggaagcaggtttgtctccatgtccagtctcttagattcacccactggggtattttgcacgttttatctcccaactttgggctgttcagggcaggaggt----------------------ccttaaaaggagacacatgacagcccattgaactacacattatggttgtcaccagagaagtttggacagtatgtgcccagagaccagctggtgagaaaaggagtctcttcctctccaggtgcaggtaacagatcctgatctccaggaggaggcatggctactttcacacaatgagggcagaa---gtgtgtgtgtgaaaaccagagatctacttgggggccttctggtttgccttgtccctttgtaaatgtgagcagaatcatccagcaatccagcctgagaggatttgatttccaagggcccagacctctcaggacagaaggtttgagccacactcctgggtaaTCaccc-aaggccccac
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74776799 721 + 122973662 cccacttggcagggaa--agtttcagtgtttccatggctgt------------tcctatcacc----atctgcaccacccaggggctgccagccacaagtaatgctggacaggtcttctacaggcacagctcagtgccagcatggaggaagcactctgaggggtgggtgccatccttcaggacatgatgcattgcttgaatcagagacatctc-tacagtgctgtgttctcaataggaagaacatgtgtgtccagaaatcaaaaggtggaagcaggtttggctccatgtccaatgtcttagattcactcaatggggtattttgcatattttatctcccaacactgggctgtgcaggatacgaggttctggtttcc-a--gagggtacccttaaaaggagacaaaagacagcccactgaactacacattacggttgtcaccagagaagtttggacagtatgtgcccagaaaccacttggtgagaagaagggtctcctcctctccaggcccaggtaatagatcctcatccccaggagaaggcatggctactttcacacaatgagggtagaa---gtgtgtg--tggaaaccagacatccacctgagagccttctggtttcccttgccccattgtaagtgtgagcagaatcatctagcaattcagcctaagaggatttgatttccaagggccaagacccggcagggcagcaggtttgagtcacactcctgggtaaTCTccc-aaggccctgc
i nomLeu3.chr1a                C 0 T 63586
s rheMac8.chr4                 30266073 735 + 172585720 cccacttggcagggaa--attttcaatgtttccgtggctgtgggttccactaatcctatcaccatctatctgcatcacccaggggctgccagccacaaggaatgctggacaggtcttctataggcacagctcagtgccagcctggaggaagcactctgaggggtgggtgccatctttcaatataggctgcattgtttgaatcagagatgtttc-tatagtgctgtgttctcaataggaagaacatgtgggtccagaaatcaaaaggtggaagcaggtttggctccatgtccaatcactttgattaacccactagggtattttgcatattttatctcccaacactgggctgtgcagggtacaaggtcctggtttcc-aaggagggtacccttaaaaggagacaaaagacagcccacagaaatacacattacagttgtcaccagagaagtgtggacagtatgtgcccagagaccacctagtgagaagaagagtctcctcctctccaggcccaggtaatagatcctcatccccaggacgaggcatgactactttcaaacaatgagggcagaa-------gtg--tggaaaccagagatccacctgggggccttctggtttcccttacctcattgtaagtgtgagcagaatcatccagcaattcagcctgacagaatttgatttccaagggcccagacccagcagggcagaaggtgtgagtcacactcctgggtaaTCTccc-aaggccctgc
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    95620 722 +    231697 cccacttggcagggaa--agttttagtgtttccatggctgtggcttccactaatcctatcacc----atctgcaccacccagaggctgccagccacaaggaatgctgcacagctcttctacaggcacagctcagtgccagcctggaggaagcactccgaggggtggctgccatctttcaagacatggtgcattgtttgaatcagagacgtctc-tatggtgctgtgttctcaattggaaaaacatgtgtgtccacaaatcgaaaggcagaagcaggtttggcttcatgtccaatcccttagattcacctaatggggtattttgcatgttttatct------------ttgaacagggtatgaggtcctgctttcc-aaggagggtacccttaaaaggagacaaaagacagcccactgaactacagatgacggttgtcaccagagaagtttggacagtatgtgcccagagaccacctggtgaaaagaggattctcctcctctccaggcccaggtaatagaccctcatccccaggaggaggcatggctactttcacacaatgagggcagaa---gtatgtg--tggaaaccagacatccacctgggggccttctggttccccttgcctcatttcaagtgtgagcagaatcatccagcaattcaacctgagacaacttgatttcaaagggcgcagaccggtcagggcagaaggtttgagtcacactcccgggtaaTCTCCC--gggccctgc
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1           4117 735 -    863181 cccacttggcagggaa--attttcaatgtttccgtggctgtgggttccactaatcctatcaccatctatctgcatcacccaggggctgccagccacaaggaatgctggacaggtcttctataggcacagctcagtgccagcctggaggaagcactctgaggggtgggtgccatctttcaatataggctgcattgtttgattcagagatgtttc-tatagtgctgtgttctcaataggaagaacatgtgggtccagaaatcaaaaggtggaagcaggtttggctccatgtccaatcactttgattcacccactagggtattttgcatattttatctcccaacagtgggctgtgcagggtacaaggtcctcgtttcc-aaggagggtacccttaaaaggagacaaaagacagcccatagaaatacacattacagttgtcaccagagaagtgtggacagtatgtgcccagagaccacctagtgagaagaagagtctcctcctctccaggcccaggtaatagatcctcatccccaggatgaggcatgactactttcaaacaatgagggcagaa-------gtg--tggaaaccagagatccacctgggggccttctggtttcccttacctcattgtaagtgtgagcagaatcatccagcaattcagcctgagaggatttgatttccaagggcccagacccagcagggcagaaggtgtgagtcacactcctgggtaaTCTccc-aaggccctgc
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29188331 736 -  71996105 cccacttggcagggaa--attttcaatgttttcgtggctgtgggttccactaatcctatcaccatctatctgcatcacccaggggctgccagccacaaggaatgctggacaggtcttctataggcacagctcagtgccagcctggaggaagcactctgaggggtgggtgccatctttcaatataggctgcattgtttgaatcagagatgtttc-tatagtgctgtattctcaataggaagaacatgtgggtccagaaatcaaaaggtggaagcaggtttggctccatgtccaatccctttgattaacccactagggtattttgcatattttatctcccaacactgggctgtgcagggtacaaggtcctggtttccaaaggagggtacccttaaaaggagacaaaagacagcccacagaaatacacattacggttgtcaccagagaagtgtggacagtatgtgcccagagaccacctagtgagaagaagagtctccacctctccaggcccagataatagatcctcatccccaggacgaggcatgactactttcaaacaatgagggcagaa-------gtg--tggaaaccagagatccacctgggggccttctggtttcccttacctcattgtaagtgtgagcagaatcatccagcaattcagcctgagaggatttgatttccaagggcccagactcagcagggcagaaggtgtgagtcacactcctgggtaaTCTccc-aaggccctgc
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          79835 731 -    735854 CCCACTTGGCAGGGAA--AGTTTTAGTGTTTccatggctgtggcttccactaatcttatcacc----atctgcaccacccagaggctgccagccacaaggaatgctggacaggtcttctacaggcacagctcagtgccagcctggaggaagcactctgaggggtgggtgccatctttcaagacgtggtgcattatttgaatcagagacgactc-tacagcgctgtgttctcaataggaagaacatgtgtgttcagaaatcaaaaggcagaagcaggtttggttccacgtccaatcccttaaattcacccactggggtattttgcatgttttatcttcgaacattgggttgtgcagggtaccaggtcctggtttct-aaggagagtacccttaaaaggagacaaaagtcagtgcactgaactacacattatggttgtcaccagagaagtgtggacagtatgtgcctggaaaccacctggtgaaaacaggattct---cctctccaggcccagg-aacagatcctcatccccaggaggaggcatggatactttcacacaatgagggcagaa---gtgtgtg--tggaaaccagagatccacctgggggccttatggtttcccttacctcattgtaagtgtgggcagaatcactcagcaattcagcctgagatgacttgatttccaaaggcccagacccatcagggcagaaggtttgagtcacacTCATGGATAATCTccc-aaggccgcgc
i manLeu1.NW_012107142v1       I 7900 C 0
s colAng1.NW_012115566v1        2813571 741 -   3067355 ccaacttgacagggaaggagatgcagcatttccatggcagtgggatccactgatactatcatc----atctgcactacccaggggctgccagctacaaagaatgctggacaggtcttctttaggcacagctcagtaccatcttagtacca-tattctgaggggtgtgtgccatctttcaggagacggtgaatttattaaatcagagatacctcaaacagtgctgtgttcttagtaggaagaacatgtgggtccagaaatcaaggggtggaagcaagtgttactccatgtccagtctcttagattcacccattggggtattttgcatgctttatctcacagctctgggctccagaaggcaggaggtcctggtttcc-aaaggagctaccattaaaagaagacaaatgacagcccattgaactacacattatggatgccagtggggaaatttggaaagtacgtgcccatacaacagctagcaagaagaagagtcttgtcctctctgggcgggcatgatagaccctgaccccaggaggtaggtggggctgctgtcacacaatggaggcaggacaagtgtgtg--tggaacccagggatccacttgggggcctcctggctccccttgtcccattgtaagtttaagcagaattgtccagcaacccagcctgagaggatttgatttccaaggtcacagacccctcaggacagaaggtttgagtcacactcccaggtgaTCTCccaagggtcccac
i colAng1.NW_012115566v1       C 0 C 0
s aotNan1.NW_018509740v1         427444 733 -    457564 ccagcttggcagggaa--agtttcggtgtttccgtggctgtgggttccactaatcctatcacc----atctgcaccacccaggggctgccagccacaagagatgctggacaggtcttctacaggcacaactcagtgccagcctggaggaagcattctgaggggtgggtaccatctttcaggacttggtgcattgtttgaatcagagacatatc-tacagtgctgtgctctcaataggaggaacatgtgggtccagaaatcaaaaggtggaagcaggtctggctccatgtccaatctcttagatccacccactgaggtactttgcatgttttatctcccaacactgggctgtgcagggtaggaggtcctggtttccacaggagggtaaccttcaaaggagacaaaagacagcccactgaactacacattatggttgtcaccagagaaggttagacagtgtgtgcccagagaccatctggtgagaagaggagtctcctcctctccaggcccaggtaatagatcctcatccccaggaggaggtatggctactttcacacagtgagggcagaa---gtgtgtg--tagaaaccagagatc-acctgggggccttctgg-ttcccttgccccattgtaagtgtgagcagaaccatccagcaattcagcctgagatgatttgacttccaaagactcagacctattagggcagaaggtttgagtcacactcctgggtaaTCTccc-aaggcc-tgc
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         345655 3680 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=447761.000000
s hg38.chr6_GL000254v2_alt      1035257 105 +   4827813 tcctgtgctctgacatcctcagtgtcattggtgcagagaccctgcttcccatgggctgttcccagccagtgat---gggtcacaccagtgacactgaggcaggacatt
s panTro5.chr6                 29997816 105 + 175400573 tcctgtgctctgacatcctcagtgtcattggtgcagagaccctgcttcccatgggctgttcccagccagtgat---gggtcacaccagtgacactgaggcaggacatt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30231556 105 + 173848474 tcctgtgctctgacatcctcagtgtcattggtgcagagaccctgcttcccatgggctgttcccagccagtgat---gggtcacaccagtgacactgaggcaggacatt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6033940 105 +   6154872 tcctgtgctctgacatcctcagtgtcattggtgcagagaccctgcttcccatgggctgttcccagcaagtgat---gggtcacaccagtgacactgaggcaggacatt
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30266808 105 + 172585720 tcctgtgctctaatatcctcagtagcatcggtgctgaggccctgcttcccatgggctgttcccaaccagtgat---gggtcataccagtgacactaaggcaggacatt
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    96342 105 +    231697 tcctgtgctctgacaccctcagtagcattggtgctgaggctctgcttcccatgggttgtacccaaccagtgac---gggtcataccagtgacgctaagggaggacatt
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1           4852 105 -    863181 tcctgtgctctaatatcctcagtagcatcggtgctgaggccctgcttcccatgggctgttcccaaccagtgat---gggtcataccagtgacactaaggcaggacatt
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29189067 105 -  71996105 tcctgtgctctaatatcctcagtagcatcagtgctgaggccctgcttcccatgggctgttcccaaccagtgat---gggtcataccagtgacactagggcaggacatt
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          80566 105 -    735854 tcctgtgctctgacatcttcagtagcactggtgctgaggccctgcttcccatgggctgttcctaaccagtgac---tggtcacaccagtggcactgaggcaggacatt
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2814312 107 -   3067355 tcctgtactccaacgttctcaacagcatttgtgcaaaggccctgcttcccataagctgttcccagccagtgatagcgggtcatagcggggacaataaggcaggg-agt
i colAng1.NW_012115566v1       C 0 C 0
s aotNan1.NW_018509740v1         428177 105 -    457564 tcctgtgctctgacatcctctgtagcattggtgctgaggccctgcttcccatgggctgctcgcaaccagtgat---ggttcataccagtgacactaaggcaggacatt
i aotNan1.NW_018509740v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         345655 3680 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e nomLeu3.chr1a                74777520 63586 + 122973662 T

a score=29524.000000
s hg38.chr6_GL000254v2_alt      1035362 5 +   4827813 cctgg
s panTro5.chr6                 29997921 5 + 175400573 cctgg
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30231661 5 + 173848474 cctgg
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6034045 5 +   6154872 cctgg
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30266913 5 + 172585720 cctgg
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    96447 5 +    231697 tctgg
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1           4957 5 -    863181 cttgg
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29189172 5 -  71996105 cctgg
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          80671 5 -    735854 cctgg
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2814419 5 -   3067355 cctgg
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         349335 5 -   1771730 cctgg
i cebCap1.NW_016107755v1       I 3680 C 0
s aotNan1.NW_018509740v1         428282 5 -    457564 cctgg
i aotNan1.NW_018509740v1       C 0 I 941
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e nomLeu3.chr1a                74777520 63586 + 122973662 T

a score=50047.000000
s hg38.chr6_GL000254v2_alt      1035367 14 +   4827813 gagaccagggactc
s panTro5.chr6                 29997926 14 + 175400573 gagaccggggactc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30231666 14 + 173848474 gagaccggggactc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6034050 14 +   6154872 gagaccagggactc
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30266918 14 + 172585720 gaggtgggggactc
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    96452 13 +    231697 gagac-ggggactc
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1           4962 14 -    863181 gaggtgggggactc
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29189177 14 -  71996105 gaggtgggggactc
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          80676 14 -    735854 gagacaggggactc
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2814424 14 -   3067355 gatacagaagactc
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         349340 14 -   1771730 gagacaggggactc
i cebCap1.NW_016107755v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e aotNan1.NW_018509740v1         428287 941 -    457564 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e nomLeu3.chr1a                74777520 63586 + 122973662 T

a score=1421016.000000
s hg38.chr6_GL000254v2_alt      1035381 309 +   4827813 ctctgacggacagcagtggctcaaagactcctccatggctttgctcaactctcctgagat-tgcctgtggtctaggacacatccagtaaaccttctgtccttctgtccatcactgg-----gggtcacatttgcatcttggtctgttgcctttcccagggtaacctgcctccgttgctatatc-tctgacaggtgtgtcccctaataaaatcctgtaactttaatcccatgatggcac----------------ttgGAAT-GCAAAATCATTTTCATCTGCACACCAGTGACCTCTTACTTACTCCAATTTGTAAA--ATCCTTTTGTTTGTTC
s panTro5.chr6                 29997940 309 + 175400573 ctctgacggacagcagtggctcaaagactcctccatggctttgctcaactctcctgagat-tgcctgtggtctaggacacatccagtaaaccttctgtccttctgtccatcactgg-----gggtcacatttgcatcttggtctgttgcctttcccagggtaacctgcctccgttgctatatc-tctgacaggtgtgtcccctaataaaatcctgtaactttaatcccatgatggcac----------------ttgGAAT-GCAAAATCATTTTCATCTGCACACCAGTGACCTCTTACTTATTCCAATTTGTAAA--ATCCTTTTGTTTGTTC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30231680 309 + 173848474 ctctgacggacagcagtggctcaaagactcctccatggctttgctcaactctcctgagat-tgcctgtggtctaggacacatccagtaaaacttctgtccttctgtccatcactgg-----gggtcacatttgcatcttggtctgttgcctttcccagggtaacctgcctccgttgctatatc-tctgacaggtgtgtcccctaataaaatcctgtaactttaatcccatgatggcac----------------ttgGAAT-GCAAAATCATTTTCATCTGCACACCAGTGACCTCTTACTTATTCCAATTTGTAAA--ATCCTCTTGTTTGTTC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6034064 309 +   6154872 ctctgacggacagcagtggctcaaagactcctccatggctttgctcaactctcctgagat-tgcctgtggtctaggacacatccagtaaaccttctatccttctgtccatcactgg-----gggtcacatttgcatcttggtctgttgcctttcccagggtaacctgcctccgttgctatatc-tctgacaggtgtgtcccctaataaaatcctgtaactttaatcccatGATGACAC----------------TTGGAAT-GCAAAATCATTTTCATCTGCACACCAGTGACCTCTTACTTACTCCAATTTGTAAA--ATCCTTTTGTTTGTTC
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30266932 327 + 172585720 ttctgacggccaactgtagctcgaggactgctccatggccttgctcaactctccttagat-tacctgtggtctaggacacgtcaagtaaatcttctctccttctgtccatcatggga----gggttacacttacatcttggtctgttgcctttcccagggtaacctgcctcccttgcaatattgtctgacagctgtgtcccctaataaaatgctgtaactttaatcccatgatggcacttgttttttggagcatttgtact-aCAAAATCATTTTCATCTGCACACCAGTGTCCTCTAATTTATCCCAATTTGTAAA--ATCCTTTTGTTTATTC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    96465 325 +    231697 ctctgatgaccaactgtacctcaaggactcctctatggccttgcttaactctccttagat-tgcctgtggtctaggacatgtccagtaaaccttctctcc-tctgtccatcacgcag----gggtcacactcacatcttggtctgttgcctttctcagggtaacctgtttccctctctatgtcttctgacaggtgtgccccat-ataaaatgttgtaactttaatcccatgatggaacttgctttttggagtatctggaca-acaAAATCATTTTCATCTGCAAACCAGTGTACTCTTACTTATTACAATTTGTAAA--ATCCTTTTGTTTATTC
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1           4976 327 -    863181 ttctgatggccaactgtagctcgaggactcctccatggccttgttcaactctccttagat-tacctgtggtctaggacacgtcaagtaaatcttctctccttctgtccatcatggga----gggtcacacttacatcttggtctgttgcctttcccagggtaacctgcctcccttgcaatattgtctgacaggtgtgtcccctaataaaatggtgtaacgttaatcccatgatggcgcttgttttttggagcatttgtact-aCAAAATCATTTTCATCTGCACACCAGTGTCCTCTAATTTATCCCAATTTGTAAA--ATCCTTTTGTTTATTC
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29189191 327 -  71996105 ttctgatggccaactgtagctccaggactcctccatggccttactcaactctccttagat-tacctgtggtctaggacacgtccagtaaatcttctctccttctgtccatcatggga----gggtcacacttacatcttggtctgttgcctttcccagggtaatctgcctcccttgcaatgtcatctgacaagtgtgtcccctaataaaatgctgtaactttaatcccatggtggcacttgctttttggaggatttgtact-aCAAAATCATTTTCATCTGCACACCAGTGTCCTCTAATTTATCCCAATTTGTAAA--ATCCTTTTGTTTATTC
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          80690 330 -    735854 atatgatgaccagctgtagcttgaggattcctccttggccttgcttaactctccgtagat-tgcctgtggtctaggacccatctagtaaaccttctctccttctgtccatcacgggggggcgggtcacacttgcatcttggtctgtcgcctttctcagggtagcctgtctccctcactatatcttctgacaggtgtgtcccctaa-aaaatgctgtaactttcatcccatgttggaacttggtttttggactatttgaact-aCAAAATCATTTTCATCTGCACACCAGTGTCCTCTTACTTATTCTAATTTGTAAA--ATCCTTTTGTTTATTC
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2814438 327 -   3067355 ctctgatggccaattgtggctcaaggactcctccatggacttgcataactctccttagat-tacctgtggtctaggacacgttcaacaaaccatctctccttctgtccatcacttg-----gggtcatacttgcatctcagtctgctgcttttcccagggtttcctggttcccttgccatattgtttggaaggtgtgtcccctaataaaaagctgcaactttcatggcatgatggcatctacttcttggaggaattgaactaacaAAATCATTTCCATCTGCACACCAGTGACCTCTTACTCTTTCCAATTTGCAAA--ATCCTTTCATTTGTCC
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         349354 320 -   1771730 ctttgatggccagctctgcctccaggactcctccatggccttgctcaacactccttagat-----tgcagtctaggac-cctccagtaaaccttctctc---ctgtccatcactga-----tgatgacacttgcatcttcatctgttgcctttcccagggtaactgacctttctcaccatattgtctgacaggtgtgtcccctaataaaatgctgtaactttaatccaattacggcacttgctctttggagcacttggact-aTAAAATCATTTTCATCTGTGCACCAGTGATCTCTTACTTATTCCAATTTGTAAAATATCCTCTTGTTTATTC
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018509740v1         429228 315 -    457564 ctctgatggccagctgtggttccaggacttctccatggccttgctcaactctccttagatttgtctgtggtctaggacacacccactgaagcttctctccttctgtccat-----------------cacttacaTCTTCATCTGTTGCCTTTCCCAGAGTAACCTACCTTTGTGGCTGTATCGTCTGACAGGTGTGTCCCCTAACAAAATGCTGTAACTTTAATCCAACGGCAGCACTTGCTTTTTGGAGCACTTGGACT-ACAAAATCATTTTCATCTGTGCACCAGTGACATCTTACTTACTCCAGTTTGTAAA--ATCCTCCTGTTTATTC
i aotNan1.NW_018509740v1       I 941 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e nomLeu3.chr1a                74777520 63586 + 122973662 T

a score=4638.000000
s hg38.chr6_GL000254v2_alt      1035690 1 +   4827813 A
s panTro5.chr6                 29998249 1 + 175400573 A
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30231989 1 + 173848474 A
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6034373 1 +   6154872 A
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74713934 1 + 122973662 a
i nomLeu3.chr1a                T 63586 C 0
s rheMac8.chr4                 30267259 1 + 172585720 A
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    96790 1 +    231697 C
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1           5303 1 -    863181 A
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29189518 1 -  71996105 A
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          81020 1 -    735854 A
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2814765 1 -   3067355 A
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         349674 1 -   1771730 A
i cebCap1.NW_016107755v1       C 0 I 3
s aotNan1.NW_018509740v1         429543 1 -    457564 A
i aotNan1.NW_018509740v1       C 0 I 471
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=1645640.000000
s hg38.chr6_GL000254v2_alt      1035691 321 +   4827813 A---CTTCTACCTGCATTGGCTCCATTTTGCTAGTATTTGTATTATGCTTTtgagatagtcgatgtttgttgctttaagtcactaaattt-gggggtagtttgttatacagcaatggataactaatGAAGCCCTCTTACATTTCTGTTATTCTATAGAGGTTAAATACATCCGTTTTATTTCCTCCCATTTTGATAATAT----------TAGCCATATATTGGGTTCCTAGTTTCTCTACGCctgtttttttc-----tttattttcgtt--tcttttctcctttattccttccctttcttctcacttc-ta-------------tctctccctccctctctttcttttctattt
s panTro5.chr6                 29998250 324 + 175400573 ACTTCTTCTACCTGCATTGGCTCCATTTTGCTAGTATTTGTATTATGCTTTtgagatagtcgatgtttgttgctctaagtcactaaattt-gggggtagtttgttatacagcaatggataactaatTAAGCCCTCTTACGTTTCCGTTATTCTATAGAGGTTAAATACATCCGTTTTATTTCCTCCCATTTTGATAATAT----------TAGCCATATATTGGGTTCCTAGTTTCTCTACGCctgtttttttc-----tttattttcatt--tcttttctcctttatcccttccctttcttctcacttc-ta-------------tctctccctccctctctttcttttctattt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30231990 319 + 173848474 ACTTCTTCTACCTGCATTGGCTCCATTTTGCTAGTATTTGTATTATGCTTTtgagataa-----atttgttgctttaagtcactaaattt-gggggtagtttgttatacagcaatggataactaatGAAGCCCTCTTACATTTCCGTTATTCTATAGAGGTTAAATACATCCGTTTTATTTCCTCCCATTTTGATAATAT----------TAGCCATATATTGGGTTCCTAGTTTCTCTACACctgtttttttc-----tttattttcatt--tcttttctcctttatcccttccctttcttctcacttc-ta-------------tctctccctccctctctttcttttctattt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6034374 324 +   6154872 ACTTCTTCTACCTGCATTGGCTCCATTTTGCTAGTATTTGTATTATGCTTTtgagatagtccatttttgttgctttaagtcactaaattt-gggggtagtttgttatacagcaatggataactaatGAAGCCCTCTTACATTTCTGTTATTCTATAGAGGTTAAATACATCCGTTTTATTTCCTCCCATTTTGATAATAT----------TAGCCATATATTGGGTTCCTAGTTTCTCTACGCCTGtttttttc-----tttattttcgtt--tattttctcctttattccttccctttcttctcacttc-ta-------------tctctccctccctctctttcttttctgttt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74713935 316 + 122973662 a---CTTCTATCTGCATTGGCACCATTTTGCTGGTATTTGTATTATGCTTTtgagtttgtcaacgtttgtggctttaagtgactaaattt-gggggtagtttgttacacagcattggataactaatGAAGCCCTCTTACATTTCCATTATTCTATAGAGGTTAACTACATCTGTTTTATTT-CTCCCATTTTCATAATAT----------TAGCCATACATAGGATTTCTAGTTTCTCAACACCTATTCTTTTC-----TTTATTTTAGtt--tcttctctcctttgttccttccctttctccttcct------------------tctctccctccctccctttcttctctattt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30267260 309 + 172585720 ACTTCTTCTACCTGCATTGGCTCCATTTTGCTGGTGTTTGCATTATGCTTTtgagttagtcgatgtttgttgctttaagtcactaaattt-gggggtagtttgttacacagcaacagataactaataAAGCCCTCTTACATTTCCATTATTCTGTAGAGGTTAACTACATCTGTTTTATGTCCTCCTATTTTCATAATAT----------AA----------GAGTTTCTAGTTTCTCTAC-----TCCTATTG-----TTTATTTTAGTT--TATTTTCtcctttgttccttccctttctcctttcttc-tg-------------tccctccctcccaccctttcttctctattt
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    96791 323 +    231697 ACTTCTTCTATCTGCATTGGCACCA-TTTGCTAGTATTTGTATTATGCTTTTGAGTTTGTCagtgttcgtggcttcaagtcactaaattt-gggggtagtttgttacacagcaacagataactcatGAAGTCCTCTTATTTGTCCATTATTCTATAGACGTTAACTACACTTGTTTTATTTCCTCCCATTTTGATAATATTAGCCATATATA----------GGATTTCTAGTTTCTCAACAACTATTCTTTTC-----TTTATTTTAGTT--TCTTCTCTCCTTTGTTCCTTCCCTTTCTCCTTCCTTC-TG-------------TCCCTCCCTCCCTCTTTTTCTTCTCTATTT
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1           5304 309 -    863181 ACTTCTTCTACCTGTATTGGCTCCATTTTGCTGGTATTTGCATTATGCTTTtgagttagtcgatgtttgttgctttaagtcactaaattt-gggggtagtttgttacacagcaacagataactaataAAGCCCTCTTACATTTCCATTATTCTATAGAGGTTAACTACATCTGTTTTATGTCCTCCTATTTTCATAATAT----------AA----------GGGTTTCTAGTTTCTCTAC-----ACCTATTC-----TTTATTTTAGTT--TATTTTCtcctttgttccttccctttctccttccttc-tg-------------tccctccctcccacccttgcttctctattt
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29189519 309 -  71996105 ACTTCTTCTACCTGCATTGGCTCCATTTTGCTGGTATTTGCATTATGCTTTtgagttagtcaatgttttttgctttaagtcaccaaattt-gggggtagtttgttacacagcaacagacaactaataAAGCCCTCTTACATTTCCATTATTCTATAGAGGTTAACTACATCTGTTTTATGTCCTCCTATTTTCATAATAT----------AA----------GGGTTTCTAGTTTCCCTAC-----ACCTATTC-----TTTATTTTAGTA--TATTTTCtcctttgttccttccctttctccttccttc-tg-------------tccctccctcccaccctttcttctctattt
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          81021 312 -    735854 ACTTCTTCTATCTGCATTGGCACCATTTTGCTGGTATTTGTAATATGTTTTtgagtttgtcgatgtttgtggctttaagtcactaaattt-gggggtagtttgttacacagcaacggataactaaCGAAGCCCTCTTACATTTCCATTATTCTACAGAGGTTAACTACACCTGTTTTATTTCCTCCCATTTTGATAATAT----------TAGCCATACATGGGATTTCTAGTTTCTCAAC-----ACCTATTCGTTTGTTTATTTTAGTt--tcttttctcctttgt------------tccttccttc-tg-------------tccctcccttcctctctttcttccctattt
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2814766 339 -   3067355 ACTTTTCCCTCCTGCAGCAGCTCCATTTTGCTGGTATTTGTATTATCTATTTCAGTTATGTGatgtttgctgttttcagtcactaaatttggggggtagttttttacacagcaatggataactaatGAAACCCTCTTATGTTTCCGTTATTCTAT-GGGGCTATCTACATCTGTTTTATTTCCTTCCATTTTGATAATAT----------CAGCCATATGTGGTGTTTCCAGTTTTTCTACACCGAGTCCTTTC-----TTGATATTAGTTTGTCTTTTCtcctttgttccttccctttcttctttcttc-tgttcctcccttccctccctccctccctctctttcttctctattt
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         349678 320 -   1771730 ---TCTTCTACCTGTAGTGGCTCCATTTTGCTAGTACTTGTATTATGCTTTtaagatagttgacatttgttgatttaagtcatgaaattt-ggggatagtttgttacacagcaaagaataactaatGGAGCCCTCTTACATTTTCATTATTCTCTAGAGGTTATCCACGTCTGTTTTATTTCCCCCCATATGG---ATAT----------TAGCAATGCATGGGGTTTCCACTTTCTCAGAGCCTATGTttttc---tttttcttttagtt--tcttctctcctttattccttttctttttctttccttc-tg-------------tctctccctccctcactttcttttctattt
i cebCap1.NW_016107755v1       I 3 C 0
s aotNan1.NW_018509740v1         430015 322 -    457564 ---ACTTCTACCTGCAGTGGCTCCATTGTGCTGGTATCTGTATTATGCTTTtgagttagttgatgtttgttgatttaagtcacgaaattt-gggaatagtttgtcacacagcaaagaacaactaatGAAGCCCTCTTACATTTTCATTATTTTCTAGAGGTTATCCACATCTGTTTTATTTTCCCCCATTTGGATAATAT----------TAGCAATGCACAGGGTTTCTACTTTCTCAAAGtctattcttttc-----tttattttagtt--tcttctctcctttgttcctttcctttttccttccttcttg-------------tctctccttccctctctttcttttctattT
i aotNan1.NW_018509740v1       I 471 N 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=28435.000000
s hg38.chr6_GL000254v2_alt      1036012 5 +   4827813 ccatt
s panTro5.chr6                 29998574 5 + 175400573 ccatt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30232309 5 + 173848474 ccatt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6034698 5 +   6154872 ccatt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74714251 5 + 122973662 ccatt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30267569 5 + 172585720 ccatt
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    97114 5 +    231697 CCACT
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1           5613 5 -    863181 ccatt
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29189828 5 -  71996105 ccatt
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          81333 5 -    735854 ccatt
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2815105 5 -   3067355 ccatt
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         349998 5 -   1771730 tcatt
i cebCap1.NW_016107755v1       C 0 I 299
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=51590.000000
s hg38.chr6_GL000254v2_alt      1036017 16 +   4827813 tg----ccctccctccctcc
s panTro5.chr6                 29998579 16 + 175400573 tg----ccctccctccctcc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30232314 16 + 173848474 tg----ccctccctccctcc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6034703 16 +   6154872 tg----ccctccctccctcc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74714256 20 + 122973662 caatctctcactctccctcc
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30267574 16 + 172585720 ca----acctctctccctcc
i rheMac8.chr4                 C 0 I 4
s macFas5.chr4_KE145577_random    97119 16 +    231697 CA----ACCTCTCACCCTCC
i macFas5.chr4_KE145577_random C 0 I 4
s cerAty1.NW_012002535v1           5618 16 -    863181 ca----acctctctccctcc
i cerAty1.NW_012002535v1       C 0 I 4
s chlSab2.chr17                29189833 16 -  71996105 ta----acttctctccctcc
i chlSab2.chr17                C 0 I 4
s manLeu1.NW_012107142v1          81338 16 -    735854 ca----acctctcgtcctcc
i manLeu1.NW_012107142v1       C 0 I 4
s colAng1.NW_012115566v1        2815110 16 -   3067355 ca----cccttcctccctcc
i colAng1.NW_012115566v1       C 0 I 241
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=291604.000000
s hg38.chr6_GL000254v2_alt      1036033  99 +   4827813 ttct-------------------cttccccttccttctttgcttccttcac---tcctctc--------tccttctttctctcctttcctcca-tttttttcttttttattATGACATATT-CTGACATAT
s panTro5.chr6                 29998595 100 + 175400573 ttct-------------------cttccccttccttctttgcttccttcac---tcctttc--------tccttctttctctcctttcctccattttttttctttttTATTATGACATATT-CTGACATAT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30232330 100 + 173848474 ttct-------------------cttccccttccttctttgcttccttcac---tcctttc--------tccttctttctctcctttcctccattttttttctttttTATTATGACATATT-CTGACATAT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6034719 100 +   6154872 ttct-------------------cttccccttccttctttgcttccttcac---tcctttc--------tccttctttctctcctttcctcCattttttttcttttttattATGACATATT-CTGACATAT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74714276 125 + 122973662 ttctca-ctccccttttcttccccttccttttccttcttttcttctttcacttttccttcc---attcgtccttctttccctccctttctcca--ttttttcattttcattATGAAATTTTCCTAACATAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30267594 126 + 172585720 ttctcacctgcagtttccttccccttccccttccttcttttcttctttcac---tccttcctccattcctgcttctttccctctcttcctcca--ttttttccttTTTATTATGAAATTTTCCTAATATAT
i rheMac8.chr4                 I 4 C 0
s macFas5.chr4_KE145577_random    97139 124 +    231697 TTCTCA-TTCCCCTTTCCTTCCCTTTCCCCTTCCTTCTTTTCTTCTTTCAC---TTTTCCTTCCATTCCTCCTTCTTTCCCTCTGTTCCTCCA--TTTTTTCCTTTTTCTTATGAAATTTTCCTAA-ATAT
i macFas5.chr4_KE145577_random I 4 C 0
s cerAty1.NW_012002535v1           5638 125 -    863181 ttctca-cccccgtttccttccccttccccttccttcttttcttctttcac---tccttcctccattcctccttctttccctctcttcctcca--ttttttccttTTTATTATGAAATTTTCCTAATATAT
i cerAty1.NW_012002535v1       I 4 C 0
s chlSab2.chr17                29189853 125 -  71996105 ttctca-cccccgtttccttccccttccccttccttcttttcttctttcac---tccttcctccactcctccttctttccctctcttcctcca--ttttttccttTTTATTATGAAATTTTCCTAATATAT
i chlSab2.chr17                I 4 C 0
s manLeu1.NW_012107142v1          81358 119 -    735854 ttccaa-ctccccttt------ccttccccttccttcttttcttctttcac---tttttcctccattcctacttctttccctcccttcctccg--tttttcccttTTTATTATGAAATTTTTCTAACATAT
i manLeu1.NW_012107142v1       I 4 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2815126 241 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=298142.000000
s hg38.chr6_GL000254v2_alt      1036132 79 +   4827813 AAAATAACCCTATGTGTTTGTACTATAAGGAAACATTTTCTGAATCTATATGTTAAAAGTATAAAGCCATGGTATATAG
s panTro5.chr6                 29998695 79 + 175400573 AAAATAACTCTATGTGTTTGTACTATAAGGAAACATTTTCTGAATATATATGTTAAAAGTATAAAGCCATGGTATATAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30232430 79 + 173848474 AAAATAACTCTATGTGTTTGTACTATAAGGAAACATTTTCTGAATATATATGTTAAAAGTATAAAGCCATGGTATATAG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6034819 79 +   6154872 AAAATAACCCTATGTGTTTGTACTATAAGGAAACATTTTCTGAATCTATATGTTAAAAGTATAAAGCCATGGTATATAG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74714401 77 + 122973662 AAAACAACCCTATGTGATTCTGCTATAAGTAAGCATTTTCTCAATCTATATGTCAAAAGTATAATGCCACGG--TATAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30267720 78 + 172585720 -AAATAACTCTATGTGATCGGGCTTTAAGTAAGCATTTTCTGAATCTATATGTCAAAAGTATAATGTCGTGGTATATGA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    97263 79 +    231697 AAAATAACCCTATGTGATTGTGCTATAAGTAAGCATTTTCTGAATCTATATGCCAAAAGTATAATGCCACGGTATATAA
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1           5763 78 -    863181 -AAATAACTCTATGTGATCGGGCTTTAAGTAAGCATTTTCTGAATCTATATGTCAAAAGTATAATGCCATGGTATATGA
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29189978 78 -  71996105 -AAATAACTCTATGTGATCGGGATTTAAGTAAGCATTTTCTGAATCTATATGTCAAAAGTATAATGCCATGGTATATGA
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          81477 79 -    735854 AAAATAACCCTATGTGATTGTGCTATAAGTAATCATTTTCTGAATCTGTATGTCAAACGTATAATGTCACAGTATATAA
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2815367 78 -   3067355 AAAATAACCCTGTGTGGTTATGCTATAAGGAAGAATTTTCTGAATCTGTATGTTAAAATTAGAACACCCT-GTATATGG
i colAng1.NW_012115566v1       I 241 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16803004 12310 -  18854210 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=191679.000000
s hg38.chr6_GL000254v2_alt      1036211 38 +   4827813 GATACAAGTTAACAACAGGAAGTTATTAACAGAGTCTG
s panTro5.chr6                 29998774 38 + 175400573 GATACAAGTTAACAACAGGAAGTTATTAACAGAGTCTG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30232509 38 + 173848474 GATACAAGTTAACAACAGGAAGTTATTAACAGAGTCTG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6034898 38 +   6154872 GATACAAGTTAACAACAGGAAGTTATTAACAGAGTCTG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74714478 38 + 122973662 GAAACAAGTAAACAACAGGAAGTTATTAACAGAGTCTG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30267798 38 + 172585720 GAAACAAGTAAACCACAGGAAGTTATTAACAGAGTCTG
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    97342 38 +    231697 GAAACAAGTAAACAATAGGAAGTTATTAACAGAGTCTG
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1           5841 38 -    863181 GAAACAAGTAAACCACAGGAAGTTATTAACAGAGTCTG
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29190056 38 -  71996105 GAAACAAGTAAACCGCAGGAAGTTATTAACAGAGTCTG
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          81556 38 -    735854 GAAACAAGTAAACAACAGGAAGTTATTAACAGAATCTG
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2815445 38 -   3067355 GAAACAAGTAAAGAAGAGGAAGTTATTAACAGAGCCTA
i colAng1.NW_012115566v1       C 0 C 0
s otoGar3.GL873550             16815314 38 -  18854210 ggtaaaaattAAGAAAAGAAAGTTATTAATAGAGTCTG
i otoGar3.GL873550             I 12310 N 0
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=23805.000000
s hg38.chr6_GL000254v2_alt      1036249 5 +   4827813 AATAA
s panTro5.chr6                 29998812 5 + 175400573 AATAA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30232547 5 + 173848474 AATAA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6034936 5 +   6154872 AATAA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74714516 5 + 122973662 AATAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30267836 5 + 172585720 AATAA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    97380 5 +    231697 AATGA
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1           5879 5 -    863181 AATAA
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29190094 5 -  71996105 AATAA
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          81594 5 -    735854 AATAA
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2815483 5 -   3067355 AATAA
i colAng1.NW_012115566v1       C 0 I 18
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=13420.000000
s hg38.chr6_GL000254v2_alt      1036254 4 +   4827813 GAAT
s panTro5.chr6                 29998817 4 + 175400573 GAAT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30232552 4 + 173848474 GAAT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6034941 4 +   6154872 GAAT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74714521 4 + 122973662 AAAT
i nomLeu3.chr1a                C 0 I 64050
s rheMac8.chr4                 30267841 4 + 172585720 AAAT
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    97385 4 +    231697 AAAT
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1           5884 4 -    863181 GAAT
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29190099 4 -  71996105 AAAT
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          81599 4 -    735854 AAAT
i manLeu1.NW_012107142v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2815488 18 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=5938.000000
s hg38.chr6_GL000254v2_alt      1036258 2 +   4827813 GC
s panTro5.chr6                 29998821 2 + 175400573 GC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30232556 2 + 173848474 GC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6034945 2 +   6154872 GC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74778575 2 + 122973662 CC
i nomLeu3.chr1a                I 64050 C 0
s rheMac8.chr4                 30267845 2 + 172585720 GC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    97389 2 +    231697 GC
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1           5888 2 -    863181 GC
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29190103 2 -  71996105 GC
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          81603 2 -    735854 AC
i manLeu1.NW_012107142v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2815488 18 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=17352.000000
s hg38.chr6_GL000254v2_alt      1036260 5 +   4827813 CTGCT
s panTro5.chr6                 29998823 5 + 175400573 CTGCT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30232558 5 + 173848474 CTGCT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6034947 5 +   6154872 CTGCT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74778577 5 + 122973662 CTGCT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30267847 5 + 172585720 CTGCT
i rheMac8.chr4                 C 0 I 1
s cerAty1.NW_012002535v1           5890 5 -    863181 CTGCT
i cerAty1.NW_012002535v1       C 0 I 1
s chlSab2.chr17                29190105 5 -  71996105 CTGCT
i chlSab2.chr17                C 0 I 1
s manLeu1.NW_012107142v1          81605 5 -    735854 CTGCT
i manLeu1.NW_012107142v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2815488 18 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    97391 0 +    231697 C

a score=-12905.000000
s hg38.chr6_GL000254v2_alt      1036265   3 +   4827813 A----------------------------------------------------------------------------------------------------TA
s panTro5.chr6                 29998828   3 + 175400573 A----------------------------------------------------------------------------------------------------TA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30232563   3 + 173848474 A----------------------------------------------------------------------------------------------------TA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6034952   3 +   6154872 A----------------------------------------------------------------------------------------------------TA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74778582 103 + 122973662 ATAATTCTGCAGCCAAGACAGTGGCTTTTAACTCAATTCCTTCAACTCTGTTTTCAGAACATATCATCAACATCAAGTATTACACATTTATTGTAAAAGTTTA
i nomLeu3.chr1a                C 0 C 0
s manLeu1.NW_012107142v1          81610   3 -    735854 A----------------------------------------------------------------------------------------------------TA
i manLeu1.NW_012107142v1       C 0 I 28
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2815488  18 -   3067355 I
e chlSab2.chr17                29190110   1 -  71996105 I
e cerAty1.NW_012002535v1           5895   1 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    97391   0 +    231697 C
e rheMac8.chr4                 30267852   1 + 172585720 I

a score=102295.000000
s hg38.chr6_GL000254v2_alt      1036268 123 +   4827813 ggctgggcatggtgactcatgcctgtaatcccagcactttgggaggcctagacgggcggatcac--gaggtcaggggatagagaccatcctggctaacacggtgaaa-ccctgtctttactaaaaa
s panTro5.chr6                 29998831 123 + 175400573 ggctaggcatggtgactcatgcctgtaatcccagcactttgggaggcctaggcgggcggatcac--gaggtcaggagatagagaccatcctggctaacacggtgaaa-ccctgtctttactaaaaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30232566 123 + 173848474 ggctaggcatggtgactcatgcctgtaatcccagcactttgggaggcctaggcgggcggatcac--gaggtcaggagatagagaccatcctggctaacacggtgaaa-ccctgtctttactaaaaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6034955 123 +   6154872 ggctgggcatggtgactcatgcctgtaatcccagcactttgggaggcctaggcgggcggatcac--gaggtcaggagatagagaccatcctggctaacacggtgaaa-ccctgtctttactaaaaa
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74778685 126 + 122973662 ggccaggcatggtggctcacacctgtaatcccagcactttgggaggctgaagtgggtggatcacctgagttcaggagtttgagaccagcctggccaacatggtgaaacccccgtctctactaaaaa
i nomLeu3.chr1a                C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2815488  18 -   3067355 I
e manLeu1.NW_012107142v1          81613  28 -    735854 I
e chlSab2.chr17                29190110   1 -  71996105 I
e cerAty1.NW_012002535v1           5895   1 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    97391   0 +    231697 C
e rheMac8.chr4                 30267852   1 + 172585720 I

a score=2380.000000
s hg38.chr6_GL000254v2_alt      1036391 4 +   4827813 taca
s panTro5.chr6                 29998954 4 + 175400573 taca
i panTro5.chr6                 C 0 I 791
s panPan2.chr6                 30232689 4 + 173848474 taca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6035078 4 +   6154872 taca
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74778811 3 + 122973662 tac-
i nomLeu3.chr1a                C 0 C 0
s otoGar3.GL873550             16673087 4 -  18854210 tgca
i otoGar3.GL873550             N 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2815488 18 -   3067355 I
e manLeu1.NW_012107142v1          81613 28 -    735854 I
e chlSab2.chr17                29190110 1 -  71996105 I
e cerAty1.NW_012002535v1           5895 1 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    97391 0 +    231697 C
e rheMac8.chr4                 30267852 1 + 172585720 I

a score=-561.000000
s hg38.chr6_GL000254v2_alt      1036395 2 +   4827813 aa-
s panPan2.chr6                 30232693 2 + 173848474 aa-
i panPan2.chr6                 C 0 I 4
s gorGor5.CYUI01015250v1        6035082 2 +   6154872 aa-
i gorGor5.CYUI01015250v1       C 0 I 2
s otoGar3.GL873550             16673091 2 -  18854210 -ac
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2815488 18 -   3067355 I
e manLeu1.NW_012107142v1          81613 28 -    735854 I
e chlSab2.chr17                29190110 1 -  71996105 I
e cerAty1.NW_012002535v1           5895 1 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    97391 0 +    231697 C
e rheMac8.chr4                 30267852 1 + 172585720 I
e nomLeu3.chr1a                74778814 0 + 122973662 C
e panTro5.chr6                 29998958 791 + 175400573 I

a score=12046.000000
s hg38.chr6_GL000254v2_alt      1036397 13 +   4827813 aaaaaaattagcc-
s panTro5.chr6                 29999749 13 + 175400573 aaaaaaattagcc-
i panTro5.chr6                 I 791 I 2282
s panPan2.chr6                 30232699 13 + 173848474 aaaaaaattagcc-
i panPan2.chr6                 I 4 I 1
s gorGor5.CYUI01015250v1        6035086 13 +   6154872 aaaaaaattagcc-
i gorGor5.CYUI01015250v1       I 2 I 1
s nomLeu3.chr1a                74778814 11 + 122973662 --aaaaattagcc-
i nomLeu3.chr1a                C 0 I 1
s otoGar3.GL873550             16673093 13 -  18854210 -caaaaaatagccg
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2815488 18 -   3067355 I
e manLeu1.NW_012107142v1          81613 28 -    735854 I
e chlSab2.chr17                29190110  1 -  71996105 I
e cerAty1.NW_012002535v1           5895  1 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    97391  0 +    231697 C
e rheMac8.chr4                 30267852  1 + 172585720 I

a score=142807.000000
s hg38.chr6_GL000254v2_alt      1036410 143 +   4827813 ggtgtggtggcgggcacctgtagccccagctactcaagaggctgaggcgggagaatggcgtgaacccaggaggtggagcttgcagtgaaccgagattgtgccactgcactccagcctgggcgacagagcaagactccgtc---aaa----
s panTro5.chr6                 30002044 143 + 175400573 ggcgtggtggcgggcgcctgtagccccagctactcaagaggctgaggcaggagaatggtgtgaacccaggaggtggagcttgcagtgaaccgagattgtgccactgcactccagcctgggcaacagagcaagactccgtc---aaa----
i panTro5.chr6                 I 2282 C 0
s panPan2.chr6                 30232713 143 + 173848474 ggcgtggtggcgggcgcctgtagccccagctactcaagaggctgaggcaggagaatggtgtgaacccaggaggtggagcttgcagtgaaccgagattgtgccactgcactccagcctgggcaacagagcaagactccgtc---aaa----
i panPan2.chr6                 I 1 C 0
s gorGor5.CYUI01015250v1        6035100 143 +   6154872 ggcgtggtggcgggtgcctgtagccccagctactcaagaggctgaggcgggagaatggcgtgaacccaggaggtggagcttgcagtgaaccgagattgtgccactgcactccagcctgggcgacagagcaagactccgtc---aaa----
i gorGor5.CYUI01015250v1       I 1 C 0
s nomLeu3.chr1a                74778826 144 + 122973662 ggcgtggtggcgggtgccagtaatcccagctactggggaggctgaggcagaagaatcacttgaa-acgggaagcagaagttgtagtgagatgagattgcaccactgcactccagcctgagcaaca-aacaagactctgtctcaaaa----
i nomLeu3.chr1a                I 1 C 0
s otoGar3.GL873550             16673106 147 -  18854210 ggcgttgtggcgggcgcctgtggtcccagctatttgggaggcggaggcaggagactcgcttgagctcaggagttggaggttgctgtgagctgtaat---gccacggcactctacccatggggacagcttgaggctccgtctcaaaaaaaa
i otoGar3.GL873550             C 0 N 0
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2815488  18 -   3067355 I
e manLeu1.NW_012107142v1          81613  28 -    735854 I
e chlSab2.chr17                29190110   1 -  71996105 I
e cerAty1.NW_012002535v1           5895   1 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    97391   0 +    231697 C
e rheMac8.chr4                 30267852   1 + 172585720 I

a score=2875.000000
s hg38.chr6_GL000254v2_alt      1036553 3 +   4827813 aaa
s panTro5.chr6                 30002187 3 + 175400573 aaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30232856 3 + 173848474 aaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6035243 3 +   6154872 aaa
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74778970 3 + 122973662 aaa
i nomLeu3.chr1a                C 0 T 64448
s otoGar3.GL873550             16815352 3 -  18854210 AGG
i otoGar3.GL873550             N 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2815488 18 -   3067355 I
e manLeu1.NW_012107142v1          81613 28 -    735854 I
e chlSab2.chr17                29190110 1 -  71996105 I
e cerAty1.NW_012002535v1           5895 1 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    97391 0 +    231697 C
e rheMac8.chr4                 30267852 1 + 172585720 I

a score=2569.000000
s hg38.chr6_GL000254v2_alt      1036556  9 +   4827813 aaaaaa-aaT
s panTro5.chr6                 30002190  7 + 175400573 aaaaaa---T
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30232859  7 + 173848474 aaaaaa---T
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6035246 10 +   6154872 aaaaaaaaaT
i gorGor5.CYUI01015250v1       C 0 C 0
s otoGar3.GL873550             16815355  9 -  18854210 -AAAAATAAT
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2815488 18 -   3067355 I
e manLeu1.NW_012107142v1          81613 28 -    735854 I
e chlSab2.chr17                29190110  1 -  71996105 I
e cerAty1.NW_012002535v1           5895  1 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    97391  0 +    231697 C
e rheMac8.chr4                 30267852  1 + 172585720 I
e nomLeu3.chr1a                74778973 64448 + 122973662 T

a score=110.000000
s hg38.chr6_GL000254v2_alt      1036565 2 +   4827813 -CT
s panTro5.chr6                 30002197 2 + 175400573 -CT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30232866 2 + 173848474 -CT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6035256 2 +   6154872 -CT
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random    97391 2 +    231697 -CT
i macFas5.chr4_KE145577_random C 0 C 0
s otoGar3.GL873550             16815364 2 -  18854210 GC-
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2815488 18 -   3067355 I
e manLeu1.NW_012107142v1          81613 28 -    735854 I
e chlSab2.chr17                29190110 1 -  71996105 I
e cerAty1.NW_012002535v1           5895 1 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30267852 1 + 172585720 I
e nomLeu3.chr1a                74778973 64448 + 122973662 T

a score=3451.000000
s hg38.chr6_GL000254v2_alt      1036567 4 +   4827813 GCTA-
s panTro5.chr6                 30002199 4 + 175400573 GCTA-
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30232868 4 + 173848474 GCTA-
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6035258 4 +   6154872 GCTA-
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74714525 4 + 122973662 GCTA-
i nomLeu3.chr1a                T 64448 C 0
s macFas5.chr4_KE145577_random    97393 4 +    231697 GCTG-
i macFas5.chr4_KE145577_random C 0 C 0
s otoGar3.GL873550             16815366 4 -  18854210 -CTGA
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2815488 18 -   3067355 I
e manLeu1.NW_012107142v1          81613 28 -    735854 I
e chlSab2.chr17                29190110 1 -  71996105 I
e cerAty1.NW_012002535v1           5895 1 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30267852 1 + 172585720 I

a score=18279.000000
s hg38.chr6_GL000254v2_alt      1036571 5 +   4827813 TAATT
s panTro5.chr6                 30002203 5 + 175400573 TAATT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30232872 5 + 173848474 TAATT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6035262 5 +   6154872 CAATT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74714529 5 + 122973662 TGATT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30267853 5 + 172585720 TAATT
i rheMac8.chr4                 I 1 C 0
s macFas5.chr4_KE145577_random    97397 5 +    231697 TAATT
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1           5896 5 -    863181 TAATT
i cerAty1.NW_012002535v1       I 1 C 0
s chlSab2.chr17                29190111 5 -  71996105 TAATT
i chlSab2.chr17                I 1 C 0
s otoGar3.GL873550             16815370 5 -  18854210 TAATT
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2815488 18 -   3067355 I
e manLeu1.NW_012107142v1          81613 28 -    735854 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=88436.000000
s hg38.chr6_GL000254v2_alt      1036576 30 +   4827813 CTGCAGCCAAGGCAGTTGCTATTAACTC--TT
s panTro5.chr6                 30002208 30 + 175400573 CTGCAGCCAAGGCAGTTGCTATTAACTC--TT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30232877 30 + 173848474 CTGCAGCCAAGGCAGTTGCTATTAACTC--TT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6035267 30 +   6154872 CTGCAGCCAAGGCAGTTGCTATTAACTC--TT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74714534 28 + 122973662 CTACCACCAAGACAGTGGCTTTTAACTC----
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30267858 28 + 172585720 CTGCAGTCAAGATAGTGGCTTTTAACTC----
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    97402 28 +    231697 CTACTGCTAAGACAGTGGCTTTTAACTC----
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1           5901 28 -    863181 CTGCAGTCGAGACAGTGGCTTTTAACTC----
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29190116 28 -  71996105 CTGCAGTCAAGACAGTGACTTTTAACTC----
i chlSab2.chr17                C 0 C 0
s colAng1.NW_012115566v1        2815506 30 -   3067355 CTGCAGCCAAGACAGTGGCTTTTAACTCTT--
i colAng1.NW_012115566v1       I 18 C 0
s otoGar3.GL873550             16815375 30 -  18854210 CTATAGGCAAGATAGTGCCCTTTGACCC--TT
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e manLeu1.NW_012107142v1          81613 28 -    735854 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=1742309.000000
s hg38.chr6_GL000254v2_alt      1036606 388 +   4827813 AATT-----CCTTCAACTC----AGTGTTTTCAGAACA---CATCAACATCACATAttacacatttattgtaaaagcttaagttggcacaattactttggaaatcatattatcattatttagtatggttaaaggcc-atacaacatatcatccaaccatcccactcctaatcatacactct-ggcggctttctcgcctatgtgcccagg---agacatgcacactaatgtttatggcaaaaactggaatcagcctcctatacatcaatagcaaa-------------------gtagtgaaattgtggtataaccataaaatgtaaaccttcagcagtaaaaatgagtgaatgacagcctcccacacaacagataa--ctcctatacataatgtgcatcatgagaaaag-aaatgtagtaggaattt
s panTro5.chr6                 30002238 386 + 175400573 AAAT-----CCTTCAACTC------TGTTTTCAGAACA---CATCAACATCACATACtacacacttattgtaaaagcttaagttggcacaattactttggaaatcatattatcattatttagtatggttaaaggcc-atacaacatatcatccaaccatcccactcctaatcatacactct-ggcggctttctcgcctatgtgcccagg---agacatgcacactaatgtttatggcaaaaactggaatcagcctcctatacatcaatagcaaa-------------------gtagtgaaattgtggtataaccataaaatgtaaatcttcagcagtaaaaatgagtgaatgacagcctcccacaccacagataa--ctcctatacataatgtgcatcatgagaaaag-aaatgcagtaggaattt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30232907 386 + 173848474 AATT-----CCTTCAACTC------TGTTTTCAGAACA---CATCAACATCACATACtacacacttattgtaaaagcttaagttggcacaattactttggaaatcatattatcattatttagtatggttaaaggcc-atacaacatatcatccaaccatcccactcctaatcatacactct-ggcggctttctcgcctatgtgcccagg---agacatgcacactaatgtttacggcaaaaactggaatcagcctcctatacatcaatagcaaa-------------------gtagtgaaattgtggtataaccataaaatgtaaaccttcagcagtaaaaatgagtgaatgacagcctcccacaccacagataa--ctcctatacataatgtgcatcatgagaaaag-aaatgcagtaggaattt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6035297 388 +   6154872 AATT-----CCTTCAACTC----AGTGTTTTCAGAACA---CATCAACATCACATAttacacatttattgtaaaagcttaagttggcacaattactttggaaatcatattatcattatttagtatggttaaaggcc-atacaacatatcatccaaccatcccactcctaatcatacactct-ggcggctttctcgcctatgtgcccagg---agacatgcacactaatgtttatggcaaaaactggaatcagcctcctatacatcaatagcaaa-------------------gtagtgaaattgtggtataaccataaaatgtaaaccttcagcagtaaaaatgagtgaatgacagcctcccacacaacagataa--ctcctatacataatgtgcatcatgagaaaag-aaatgcagtaggaattt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74714562 386 + 122973662 GATT-----CCTTCAACGC----AGTGTTTTCAGAACACATCATcaacatcaagtattacacatttattgtaaaagtttaagtagccacaatcactttgaaaatca------cattatctagtatggttaaagtcc-atacaacatatcatccaaccaacccattcctaatcatccactctggggggctttcttacctatgtgcacagg---agacatgcacactaatgtttatggcaaaaactggaatcagccacatatacatcaataggaaa-------------------gtagtgaaattgtggtataaccataaaatgtaaaccttcatcagtaaaaatgaatgaatgacagcctcccacaccacagataa--ctcctatacgtaatgtgcatcatgggaaaat-aaatgcagtaggaattt
i nomLeu3.chr1a                C 0 I 1
s rheMac8.chr4                 30267886 393 + 172585720 AATT-----CCTTCAACTC----AGTGTTTTCAGAACACATCATCAACATCAAGTATTACATATTTATTgtaaaagtttaagcagccacaatcactttggaaatcatattatcattatctagtagggtttgggtcctatacaatgtatcatccaaccaacccattcttaatcgtacactccggggggctttcttgcctatgtgcacagg---agacgtgcacactaatgtttactgcaaaaactagaatcagccacatatacatcaaaaggaaa-------------------gtagtgaaattgtggtataatcataaaatgtaaaccttcagcagtaaaaatgaatgaatgacagcctcccacaccacagataa--ctcctatacttgatgtgcatcatgggaaaat-aaatgcagtaggaattt
i rheMac8.chr4                 C 0 I 1
s macFas5.chr4_KE145577_random    97430 385 +    231697 AATT-----CCTTCGACGC----AGTATTTTGAGAACACCT------CATCAAGTAttacacatttattgtaaaagtttaaatagccacaatcactttggaaatcatattatcattatctagtatgattaaagtcc-gtacaacgtatcatccaaccaacccatccctaatcatccactctggggggctttcttacctatgtgcacagg---agacaggcacattaacgtatatggcaaatagtggaatcagccacatatacatcaataggaaa-------------------gtagtgaaattgtggtataaccataaaatgtaaaccttcagcagtaaaaatgaatgaa-gacagtctcccacaccacagataa--ctcctatatgtaatgtgcatcatgggaaaat-aaatgcagtaggaattt
i macFas5.chr4_KE145577_random C 0 I 1
s cerAty1.NW_012002535v1           5929 393 -    863181 AATT-----CCTTCAACTC----AGTGTTTTCAGAACACATCAACAACATCAAGTATTACATATTTATTgtaaaagtttaagcagccacaatcactttggaaatcatattatcattatctagtagggtttaagtcctatacaa-gtatcatccaaccaacccattcttaatcgtacactccggggggctttcttgcctatgtgcacagg---agacgtgcacactaatgtttactgcaaaaagtggaatcagccacatatacatcaaaaggaaa-------------------gtagtgaaattgtggtataaccataaaatgtaaaccttcagcagtaaaaatgaatgaatgacagcctcccacaccacagataa--ctcctatacgtaatgtacatcatgggaaaacaaaatgcagtaggaattt
i cerAty1.NW_012002535v1       C 0 I 1
s chlSab2.chr17                29190144 393 -  71996105 AATT-----CCTTCAACTC----AGTGTTTTCAGAACACATCATCAACATCAAGTATTACATATTTATTgtaaaagtttaagcagccacaatcactttggaaatcatattatcattatctagtagggtttaagtcctatacaatgtatcatccaaccaacccattcttaatcgtacactccggggggctttcttgcctatgtgcacagg---agacgtgcatactaatgtttactgcaaaaattggaatcagccacatatacatcaaaaggaaa-------------------gtagtgaaattgtggtataaccataaaatgcaaaccttcagcagtaaaaatgaatgaatgacagcctcccacaccacagataa--ctcctatacataatgtacatcatgggaaaat-aaatgcagtaggaattt
i chlSab2.chr17                C 0 I 1
s manLeu1.NW_012107142v1          81641 390 -    735854 AATT-----CATTCAACGC----AGTATTTTCAGAACACATCATTAACATCAAGTATTGCACATTTATTgtaaaagtttaagtagccacaatcac-ttggaaatcatattatcattatctagtatggttaaa--tccatacaacctatcatccaaccaacccattcctaatcatccgctctggggggctttcttacctatgtgcacagg---agacatgcacattaatgtatatggcaaaaaccagaatcagccacatatacatcaataggaaa-------------------gtagtgaaattgtggcataaccataaaatgtaaaccttcagcagtaaaaatgaatgaatgacagtctcccgcaccacaggtaa--ctcttatacgtaatgtgtatcgtgggaaaat-aaatgcagtaggaattt
i manLeu1.NW_012107142v1       I 28 I 1
s colAng1.NW_012115566v1        2815536 396 -   3067355 AATTTCTCACCTTCAACTT----AGTGTTTTCAGAACGCATCATcaacatcaactcttatacatacatcataaaagtttaagttgatactatcactttagaaatcaaattatcattatatagtatggttaaagtca-atacaacatattatccaatcatcccactcctgatcatacactct-ggacacttttttgcctgtgtgcctagg---agacatgcacactaacagttatggcaaaaactggaatctgccacatatacatcattaggaaa-------------------gtaacgaaattgtagtgtaatcataaaatgtaaaacttcagcagtaaaaatgaatgaatgacagtctcccacaccacagataa--ctcctacatataatgcgcatcatggaaaaat-aaatgcagaaggaattt
i colAng1.NW_012115566v1       C 0 I 228
s otoGar3.GL873550             16815405 414 -  18854210 AATA-----CCTCCCTTTCTTTGAGTGTTTTGAGAACACACgagcaatctacactcttacagattcctgataaaggttaaattggtaccagtcaccttggaaataaaattagccttaactagtatagttcaactac-ttacaccatataatccccccatcctactcctgagcacacactct-ggggaccttctggcctacgtgacctgacatgtacaggcatgctaatgtttgtggaaaaaactggaatcaaccatatctacaactaaagaaaagtagcaaaggtagcaaaacgtagcaaaactgtggcacagttatgaaatgtagaatttctatagtaaaaatgaat----gacagtctcccaaatcgggggtaactctcctacacgtggtgtgtcccacaagagaaa-acatggaggatgagtt-
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=200544.000000
s hg38.chr6_GL000254v2_alt      1036994  64 +   4827813 ctgtaca--ggaagcttaaaaaccagtga----aacta----atatttggtttgagat---------------------------------tatatatacttattgt
s panTro5.chr6                 30002624  64 + 175400573 ctgtaca--ggaagcttaaaaaccagtga----aacta----atatttggtttgagat---------------------------------tatatatacttattgt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30233293  64 + 173848474 ctgtaca--ggaagcttaaaaaccagtga----aacta----atatttggtttgagat---------------------------------tatatatacttattgt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6035685  64 +   6154872 ctgtaca--ggaagcttaaaaaccagtga----aacta----atatttggtttgagat---------------------------------tatatatacttattgt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74714949 101 + 122973662 ctgtacc--agaagcttaaaacctagcaa----aactaactgatacttgtttggggatatatatatatatatatatatatatatatatatatatatatacttattgc
i nomLeu3.chr1a                I 1 C 0
s rheMac8.chr4                 30268280  66 + 172585720 ctgtata--ggaagcttaaaaaccagcaa----aacta----ttatttgctttgggaa-------------------------------tatatatatacttattgc
i rheMac8.chr4                 I 1 C 0
s macFas5.chr4_KE145577_random    97816  70 +    231697 ctgtgca--ggaagcttaaaaaccagcaa----aactaactgatatttggtttgggca-------------------------------tatataaatacttattgc
i macFas5.chr4_KE145577_random I 1 C 0
s cerAty1.NW_012002535v1           6323  66 -    863181 ctgtata--ggaagcttaaaaaccagcaa----aacta----gtatttgctttgggaa-------------------------------tatatatacacttattgc
i cerAty1.NW_012002535v1       I 1 C 0
s chlSab2.chr17                29190538  66 -  71996105 ctgtata--ggaagcctaaaaaccagcaa----aacta----ttatttgctttgggaa-------------------------------tatatatatacttattgc
i chlSab2.chr17                I 1 C 0
s manLeu1.NW_012107142v1          82032  70 -    735854 ctgtaca--ggaaacttaaaaaccagcaaaattaactg----atacttggtgtgggga-------------------------------tatatatatacttattgc
i manLeu1.NW_012107142v1       I 1 C 0
s otoGar3.GL873550             16815819  62 -  18854210 cagtatagtggaagtttaaaaacaggtga----aacta----atattcagtttgggga---------------------------------tatagacaA-TAT---
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350003 299 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2815932 228 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=23932.000000
s hg38.chr6_GL000254v2_alt      1037058 7 +   4827813 acaaata
s panTro5.chr6                 30002688 7 + 175400573 acaaatc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30233357 7 + 173848474 acaaatc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6035749 7 +   6154872 acaaatc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74715050 7 + 122973662 aacaatc
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30268346 7 + 172585720 acaaatc
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    97886 7 +    231697 acaaatc
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1           6389 7 -    863181 acaaatc
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29190604 7 -  71996105 acaaatc
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          82102 7 -    735854 acaaata
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         350302 7 -   1771730 ACAAATA
i cebCap1.NW_016107755v1       I 299 C 0
s otoGar3.GL873550             16815881 6 -  18854210 ACAATC-
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2815932 228 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=264979.000000
s hg38.chr6_GL000254v2_alt      1037065 61 +   4827813 tttaaagaaatacaaagtaataataaaaacaagactcaggatggggtctcattctgggggA
s panTro5.chr6                 30002695 61 + 175400573 tttaaagaaatacaaagtaataataaaaacaagactcaggagggggtctcattctgggggA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30233364 61 + 173848474 tttaaagaaatacaaagtaataataaaaacaagactcaggagggggtctcattctgggggA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6035756 61 +   6154872 tttaaagaaatacaaagtgataataaaaacaagactcaggatggggtctcattctgggggA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74715057 60 + 122973662 attaaagaaatacaaaggaataataatcac-aggttcaggttggagcctccttctgggggA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30268353 61 + 172585720 tttaaagaattacaaaagaatactaatcacaagactcaggatgaagtcttcttctgggggA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    97893 60 +    231697 tttaaagaaatacaaaggtataataatcac-aggttcaggatggagtctccttctggggaa
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1           6396 61 -    863181 tttaaagaatgacaaaagaatactaatcacaagactcaggatgaagtcttcttctgggggA
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29190611 61 -  71996105 tttaaagaattacaaaagaatactaatcacaagactcaggatgaagtcttcttctgggggA
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          82109 60 -    735854 tttaaagaaatacaaaagaataataatcac-agattcaggatggagtctccttctgggggA
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         350309 61 -   1771730 TTtaaagaaacacacaggaataataatcacaagactcaggatggagtttccttctggggga
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          74420 61 -    383796 tttaaagaaatgcacaggaataataatcacaacaatcaggatggagtctctttctgggggA
i aotNan1.NW_018496904v1       N 0 C 0
s otoGar3.GL873550             16815887 22 -  18854210 TTTAGAAAAATG------------------AAGACTCTGG---------------------
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2815932 228 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=232917.000000
s hg38.chr6_GL000254v2_alt      1037126 37 +   4827813 TGTGAGTGGGCAGCAGCCCAGGGTGGCTTTGCGGGTT
s panTro5.chr6                 30002756 37 + 175400573 TGTGATTGGGCAGCAGCCCAGGGTGGCTTTGCGGGTT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30233425 37 + 173848474 TGTGATTGGGCAGCAGCCCAGGGTGGCTTTGCGGGTT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6035817 37 +   6154872 TGTGATTGGGCAGCAGCCCAGGGTGGCTTTGCGGGTT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74715117 37 + 122973662 TGTGAATGGGCATCAGTCCAGGGGAGTTTTACAGGTT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30268414 37 + 172585720 TGTGAATGGGCAGCAGCCCAGGGTGGCTTTACAGGTT
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    97953 36 +    231697 -gtgaATGGGCAGCAGCCCGGGGGAGCTTTACAGGTT
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1           6457 37 -    863181 TGTGAATGGGCAGCAGCCCAGGGTGGCTTTACAGGTT
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29190672 37 -  71996105 TGTGAATGGGCAGCAGCCCAGGGTGGCTTTACAGGTT
i chlSab2.chr17                C 0 N 0
s manLeu1.NW_012107142v1          82169 37 -    735854 TGTGAATGGACAGCAGCCCAGGAGAGATTTACAGGTT
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2816160 37 -   3067355 TGTGATTGGGCAGCAGCTCAGGGTGGCTTCACAGGTT
i colAng1.NW_012115566v1       I 228 C 0
s cebCap1.NW_016107755v1         350370 37 -   1771730 tgggaATGGGCAGCAGTCCAGTGTAGCTTTACAGGTT
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          74481 37 -    383796 TGGCAATGCACAGCAGCCCAGGGTAGCTTTGCAAGTT
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16815909 34 -  18854210 ---GCGCCGGCAGCAGCCCATGGTGTCTTCATAGGTT
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=431023.000000
s hg38.chr6_GL000254v2_alt      1037163  87 +   4827813 CT-GTGTCTTATGCCAGTGCTGGGAACCCAGGTAACTACTAGATTATAACTCCTTAAAC-AGTATTTTTCAAA-----------------CTAAAATATACCTGTT-------
s panTro5.chr6                 30002793  87 + 175400573 CT-GTGTCTTACGCCAGTGCTGGGAACCCAGGTAACTACTAGATTATAACTCCTTAAAC-AGTATTTTTCAAG-----------------CTAAAATATAGCTGTt-------
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30233462  87 + 173848474 CT-GTGTCTTACGCCAGTGCTGGGAACCCAGGTAACTACTAGATTATAACTCCTTAAAC-AGTATTTTTCAAG-----------------CTAAAATATAGCTGTt-------
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6035854  87 +   6154872 CT-GTGTCTTACGCCAGTGCTGGGAACCCAGGTAACTACTAGATTATAACTCCTTaaac-agtatttttcaaa-----------------ctaaaatatacctgtt-------
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74715154  85 + 122973662 CT-GTGTTTTACACCAGTGCTGGGCACCCTGATAGTTACTTGACTGTAATTCCTC--AC-AGAGTTTTCCAAA-----------------TGAAACTATACCTGTT-------
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30268451  86 + 172585720 -T-GTATTTTACACCAGTGCTGGGCAGCCTGCTAGTTACTTGATTATATTTCCTAAAAT-AGAGTTTTTCAAA-----------------TTAAAATATACCTGTT-------
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    97989  86 +    231697 -CGGTGTTTTACACCAGTGCTGGGCACCCTGCTAGTTACTTGATTGTAGTTCCT-AAAT-AGAGTTTTCCAAA-----------------TTAAAGTATACCTGGT-------
i macFas5.chr4_KE145577_random C 0 I 653
s cerAty1.NW_012002535v1           6494  86 -    863181 -T-GTATTTTACACCAGTGCTGGGCAGCCTGCTAGTTACTTGATTATATTTCCTAAAAT-AGAGTTTTTCAAA-----------------TAAAAATATACCTGTT-------
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                42814914  86 +  71996105 CT-GTGTTTTACACCAGTGCTGGGCACCCTGGTAGTTACTTGATGGTAATTCC-TAAAC-AGAGTTTTCCAAA-----------------TTAAAATATACCTGTT-------
i chlSab2.chr17                N 0 C 0
s manLeu1.NW_012107142v1          82206  87 -    735854 CT-GTGTTTTACACCACTGCTGGGCACCCTGGTAGTTACTTCATCATAATTCCTTAAAC-AGAGTTTTCCAAA-----------------TTAAAATATACTTGTT-------
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2816197  87 -   3067355 CT-GTTCCTTATGCCAGTGCTGGGTGCCCATGTAGTTTCTTGATCATAACTCCTTCAAT-AGTGTTTCTCAAA-----------------CCAAAAAATACCTTTT-------
i colAng1.NW_012115566v1       C 0 I 3
s cebCap1.NW_016107755v1         350407  86 -   1771730 CT-GTATTTTACCCCAG-TCTAGACACCCCGATAGTTACTTGATTATAATTCCTTAAAC-AGAATTTTTCAAA-----------------TTAAAGTATACCTGGT-------
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          74518  87 -    383796 CT-GTGTTTTACCCTAGTTCTGGGCACCTTGATAGTTACTTGATTATAATTCTTTAAAC-AGAGTTTTTCAAA-----------------TTAAAATATACCTGCT-------
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16815943 112 -  18854210 CT-TGTTCTTATGCCAGTGGCAGGTGCCCAAGTACTTACATGATCGTAACTCCTTGAACTGGAGTTTTTCAAACTGCTCTTTGATGCACCTTGGGATATAGTTTTGATGAGTA
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=12804.000000
s hg38.chr6_GL000254v2_alt      1037250 5 +   4827813 -TCTTA
s panTro5.chr6                 30002880 5 + 175400573 -tctta
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30233549 5 + 173848474 -tctta
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6035941 5 +   6154872 -tctta
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30268537 5 + 172585720 -TTTTA
i rheMac8.chr4                 C 0 I 6233
s cerAty1.NW_012002535v1           6580 5 -    863181 -TTTTA
i cerAty1.NW_012002535v1       C 0 n 0
s chlSab2.chr17                42815000 5 +  71996105 -TTTTA
i chlSab2.chr17                C 0 N 0
s manLeu1.NW_012107142v1          82293 5 -    735854 -TTTTG
i manLeu1.NW_012107142v1       C 0 I 1
s colAng1.NW_012115566v1        2816287 4 -   3067355 -TTTT-
i colAng1.NW_012115566v1       I 3 C 0
s cebCap1.NW_016107755v1         350493 5 -   1771730 -TTTTG
i cebCap1.NW_016107755v1       C 0 I 1
s aotNan1.NW_018496904v1          74605 5 -    383796 -TTTTG
i aotNan1.NW_018496904v1       C 0 I 1
s otoGar3.GL873550             16816055 5 -  18854210 TTTTT-
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    98075 653 +    231697 I
e nomLeu3.chr1a                74715239 0 + 122973662 C

a score=26320.000000
s hg38.chr6_GL000254v2_alt      1037255 15 +   4827813 AAAAATGAA--AGAAAA
s panTro5.chr6                 30002885 15 + 175400573 aaaaatgaa--ataaaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30233554 15 + 173848474 aaaaatgaa--ataaaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6035946 15 +   6154872 aaaaatgaa--agaaaa
i gorGor5.CYUI01015250v1       C 0 C 0
s manLeu1.NW_012107142v1          82299 17 -    735854 Agaaatgaaagagaaaa
i manLeu1.NW_012107142v1       I 1 C 0
s colAng1.NW_012115566v1        2816291 15 -   3067355 TTTAATGAA--AGAaga
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         350499 15 -   1771730 AGAAGGGAA--AGGGAa
i cebCap1.NW_016107755v1       I 1 I 2
s aotNan1.NW_018496904v1          74611 15 -    383796 Agaaaggaa--agagaa
i aotNan1.NW_018496904v1       I 1 I 2
s otoGar3.GL873550             16816060 15 -  18854210 AAAATGGAA--AGAAAA
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002535v1           6585  0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    98075 653 +    231697 I
e rheMac8.chr4                 30268542 6233 + 172585720 I
e nomLeu3.chr1a                74715239  0 + 122973662 C

a score=145279.000000
s hg38.chr6_GL000254v2_alt      1037270 46 +   4827813 AAATATCAAAGTTCATTGCAAGGATCCTTAACAAGAACTACTTACA
s panTro5.chr6                 30002900 46 + 175400573 aaatatcaaagttcattgcaaggatccttaacaagaactacttaca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30233569 46 + 173848474 aaatatcaaagttcattgcaaggatccttaacaagaactacttaca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6035961 46 +   6154872 aaatatcaaagttcattgcaaggatccgtaacaagaactacttaca
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74715239 46 + 122973662 Gaattccaaggttcatttcaaggatccttaacaagaactacttaca
i nomLeu3.chr1a                C 0 I 262
s manLeu1.NW_012107142v1          82316 46 -    735854 gaatttcaaagtttattacaaggatccttaacaagaactacttaca
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2816306 46 -   3067355 aaataccaaagttcattgcaaggatgcttagcaagaacaactcaca
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         350516 46 -   1771730 gaataccaaagttcactgcaagaatccttaagaagaactacttaca
i cebCap1.NW_016107755v1       I 2 C 0
s aotNan1.NW_018496904v1          74628 46 -    383796 gaatatgaaagttcactgcaagaatccttaagagcaattacttaca
i aotNan1.NW_018496904v1       I 2 C 0
s otoGar3.GL873550             16816075 43 -  18854210 ---TACCAAAGTTCATTGCCAAGATCCCTACTGAGAACTACTTACC
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002535v1           6585  0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    98075 653 +    231697 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=619746.000000
s hg38.chr6_GL000254v2_alt      1037316 265 +   4827813 TTGGAAGAAAGCCACAGAGAATTGTAAGGAGCCACATGACAGAGAGGCTCCTTACAGGATGCCATGACAATACCCTTGGCTAAA---GGGCCATATGATCCTTGGCTCACAGGCATCTCTCTAGATTTTCAGGTATACAAGATTCAAtctgatgtgcaaggtaattccattttgcaaaggatttgatttgttacatatt-cca-cacatacaactgaattaaacttttacagaattggaaatgcacatcattgatcaaaatagatgaaac
s panTro5.chr6                 30002946 265 + 175400573 ttggaagaaaaccacagagaattgtaaggagccacgtgacagagaggctccttacaggatgccatgacaatacccttggctaaa---gggccatatgatccttggctcacaggcatctctctagattttcaggtatacaagattcaatctgatgtgcaaggtaattccatcttgcaaaggatttgatttgttacatatt-cca-cacatacaactgaattaaacttttacagaattggaaatgcacatcattgatcaaaatagatgaaac
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30233615 265 + 173848474 ttggaagaaaaccacagagaattgtaaggagccacgtgacagagaggctccttacaggatgccatgacaatacccttggctaaa---gggccatatgatccttggctcacaggcatctctctagattttcaggtatacaagattcaatctgatgtgcaaggtaattccatcttgcaaaggatttgatttgttacatatt-cca-cacatacaactgaattaaacttttacagaattggaaatgcacatcattgatcaaaatagatgaaac
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6036007 265 +   6154872 ttggaagaaaaccacagagaattgtaaggagccacatgacagagaggctccttacaggatgccatgacaatacccttcgctaaa---gggccatatgatccttggctcacaggcatctctctagattttcaggtatacaagattcaatctgatgtgcaaggtaattccatcttgcaaaggatttgatttgttacatatt-cca-cacatacaactgaattaaacttttacagaattggaaatgcacatcattgatcaaaatagatgaaac
i gorGor5.CYUI01015250v1       C 0 C 0
s manLeu1.NW_012107142v1          82362 262 -    735854 ttggaagaaaaccacagagaactgtaaggagccatgtgacagagagga-----acaggatcccatgaaaatggccttggctacaaataggccatctgatccttggctcactggcatctctccagattttcaattatacaatgttcaatctgCtatgcaaggtaattccatcttgcaaaggatttga--tgttacattttacca-cacatgaaactgaattaaacttttacagaactggaaatgcacatcattgatcaaaacaaatgaagc
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2816352 263 -   3067355 ttggaagaaaaccacagccatttgtaaggagccatgtaacagaaagga-----tcaggatgccatgaatacggcattggctagaaataggtcatttgatccttggcccactggcatctccatagattttcag-cgtacaatgttcagtctgatgtgcaagccaactccatcttgcaaaggatttgatgtgttacattttacca-cacgcatatctgaattaaacttttacagaatcggaaatgcacattactgatcaaaataaatttaac
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         350562 251 -   1771730 ttagaagaaaaccacagagaattgtaaggagccatgttactgaaagaa-----ccaggatgccatgaaaatgaccttggctagaaataggtcatttgatccttggctcactg-----------gattttcaagtatacaatgttcaatctgatGTGCAAAGTAATTCAGCCTTGCAAaggatttga--tgttatattttatca-tacatacaactgaattaaacttctacagaattggaaaagcacatcattgatcaaaataaatgaaat
i cebCap1.NW_016107755v1       C 0 I 1
s aotNan1.NW_018496904v1          74674 261 -    383796 ttggaagaaaaccgcagagaattataaggagccatgtgacagagagga-----ccaggatgccatgaaaatgg-cttgactagaaataggtcatttgatccttggctcactggcatctctctagattttcaggtatacaatgttcaatctgctgtgcaaggtaattcaaccttgcaaaggatttga--tattatattttatca-cacatacaactgaattaaacttttacagaattggaaatgcacatcattgatcaaaataaatgaaac
i aotNan1.NW_018496904v1       C 0 N 0
s otoGar3.GL873550             16816118 264 -  18854210 TTGGAATAAAGCCACAGACAATAGTAATGGACCACGTGACAGAAAAGA-----GCAGGATGCCATGACAGTCGCCCTGGCTAGAACAACGTCATGTGACCCTTGGCTCACTGGCAACTCTGTGGATTCTCTGGCATAAAAAGGTAAACCTGATGAGCAAGGCACTTCCatcttgcaaaagagttagtatgttacttctacttatcacacacaaccaaattgaactttcacagaatt-gaaaggcagagtcttgatcaaaagaaattaaac
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002535v1           6585   0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    98075 653 +    231697 I
e rheMac8.chr4                 30268542 6233 + 172585720 I
e nomLeu3.chr1a                74715285 262 + 122973662 I

a score=1911.000000
s hg38.chr6_GL000254v2_alt      1037581 1 +   4827813 a
s panTro5.chr6                 30003211 1 + 175400573 a
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30233880 1 + 173848474 a
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6036272 1 +   6154872 a
i gorGor5.CYUI01015250v1       C 0 C 0
s manLeu1.NW_012107142v1          82624 1 -    735854 a
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2816615 1 -   3067355 a
i colAng1.NW_012115566v1       C 0 C 0
s otoGar3.GL873550             16816382 1 -  18854210 a
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350813 1 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002535v1           6585 0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    98075 653 +    231697 I
e rheMac8.chr4                 30268542 6233 + 172585720 I
e nomLeu3.chr1a                74715285 262 + 122973662 I

a score=160345.000000
s hg38.chr6_GL000254v2_alt      1037582 56 +   4827813 ataaaagagtataaaggaacaaccagt------------------------------------gatggaatagcaaatatgaatggaaaaca
s panTro5.chr6                 30003212 56 + 175400573 ataaaagagtataaaggaacaaccagt------------------------------------gatggaatagcaaatatgaatggaaaaca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30233881 56 + 173848474 ataaaagagtataaaggaacaaccagt------------------------------------gacggaatagaaaatatgaatggaaaaca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6036273 56 +   6154872 ataaaagagtataaaggaacaaccagt------------------------------------gatggaatagcaaatatgaatggaaaaca
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74715547 56 + 122973662 agaaaagagtaggaaggaatacccagt------------------------------------gatggaatagcaaatatgaatggaaaaca
i nomLeu3.chr1a                I 262 C 0
s manLeu1.NW_012107142v1          82625 56 -    735854 agaaaagagtaggaaggaatacccagt------------------------------------gacggaatagcaaacatgaatggaaaaca
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2816616 56 -   3067355 ggaaaagattataaacaaataaccagt------------------------------------gatgaaatagcaaatattaatgggaaacg
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         350814 56 -   1771730 acaaaatagtagtaataaataatcagt------------------------------------gatggcatagcaaatatgaatgcaaaaca
i cebCap1.NW_016107755v1       I 1 I 39
s aotNan1.NW_018496904v1         221080 56 -    383796 acaaaatagtataagggaataatcagt------------------------------------gatagacgagcaaatatgaatggaaaaca
i aotNan1.NW_018496904v1       N 0 C 0
s otoGar3.GL873550             16816383 92 -  18854210 gaaaaacattataaaagaataaccagtATCTTTCAAGGAGTGATAAAAATATAGAATAACCAAAATGGAATAGAAAATATGAATGGAAAACA
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002535v1           6585  0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    98075 653 +    231697 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=27649.000000
s hg38.chr6_GL000254v2_alt      1037638 28 +   4827813 caacaggattgct-------------caaaaaaacttgaaa
s panTro5.chr6                 30003268 28 + 175400573 caacaggattgct-------------caaaaaaacttgaaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30233937 28 + 173848474 caacaggattgct-------------caaaaaaacttgaaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6036329 28 +   6154872 caacaggattgct-------------caaaaaaacttgaaa
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74715603 36 + 122973662 gaataggactgct-aa----aaagaaaaaaaaaattcagaa
i nomLeu3.chr1a                C 0 C 0
s manLeu1.NW_012107142v1          82681 37 -    735854 gaataggactgctaga----aagaaaagaaaaatttcagaa
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2816672 32 -   3067355 gaacagggctgct---------ttaaaaaaaaactttagaa
i colAng1.NW_012115566v1       C 0 C 0
s aotNan1.NW_018496904v1         221136 41 -    383796 aaaggggactgcaaaaaattaaaaaaaaaaaacacttcaga
i aotNan1.NW_018496904v1       C 0 I 1
s otoGar3.GL873550             16816475 25 -  18854210 ---CACAGTTACT-------------TTAGAAAACTTTAGA
i otoGar3.GL873550             C 0 I 5111
e saiBol1.JH378364                57834 7960 +    187130 I
e cebCap1.NW_016107755v1         350870 39 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002535v1           6585  0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    98075 653 +    231697 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=585567.000000
s hg38.chr6_GL000254v2_alt      1037666 234 +   4827813 gcacaaaattgcagtgctatttagaatcatagtggtgtccaaatcacttctatcgtatctgattcaataccagaacaaaagatgttaagtttattatagaatgctcaccaaatagccagtttttg-----------aaaaa------------------tcttatgcctcagttggagctaaccattttgggctactgcatccaaccaaagctattgacatcttgctaagctagatgtgttaactgaggtatgagattcacat
s panTro5.chr6                 30003296 234 + 175400573 gcacaaaattgcagtgctatttagaatcatagtggtgtccaaatcacttctatcatatctgattcaataccagaacaaaagatgttaagtttattatagaatgctcaccaaatagccagtttttg-----------aaaaa------------------tcttatgcctcagttggagctaaccattttgggctactgcatccaaccaaagctattaacatcttgctaagctagatgtgttaactgaggtatgagattcacat
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30233965 234 + 173848474 gcacaaaattgcagtgctatttagaatcatagtggtgtccaaatcacttctatcatatctgattcaataccagaacaaaagatgttaagtttattatagaatgctcaccaaatagccagtttttg-----------aaaaa------------------tcttatgcctcagttggagctaaccattttgggctactgcatccaaccaaagctattaacatcttgctaagctagatgtgttaactgaggtatgagattcacat
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6036357 234 +   6154872 gcacaaaattgcagtgctatttagaatcatagtggtgtccaaatcacttctatcgtatctgattcaataccagaacaaaagatgttaagtttattacagaatgctcaccaaatagccagtttttg-----------aaaaa------------------tcttatgcctcagttggagctaaccattttgggctactgcatccaaccaaagctattgacatcttgctaagctagatgtgttaactgaggtatgagattcacat
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74715639 245 + 122973662 gcacataataacagtgctatatagaatcatagttgtgtccaaatcacttctatcacaactcatttaataccacaacaaaagatgttaagtttattatagaatgcccactcaatagccagtttttgaaaaaaaaataaaaaa------------------actattttctcaattcgagctaaccatttcgggctatggcatcaaaccaaagtcattggcatcatgttaagctagatgtgttgaccaaagtatgaggttcacat
i nomLeu3.chr1a                C 0 C 0
s manLeu1.NW_012107142v1          82718 251 -    735854 gcacataatag-agtgctatatagaatcatagtggtgttcaaatcacttctatcacatctcattgaataccacaatgaaagatgttaagtttattatagaatgcccaccgaatagccagtttaaa-----------aaaacaaaaaaaaacaaaaaaaaacttgtttctcaattcgagctaaccatttcaggctatggcgtgaaaccaaaggtattagcatcatgttaagctaggtgtgttgactgaagtatgagattcacat
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2816704 234 -   3067355 gcacataatagcagtggtatttagaatcatagtggtgtcctaatcacttctaccaaattccattcgaaaccagagtgaaagatgttaactttattatagaagtccccctgaatagccagtttttg-----------aaaac------------------tcttgtttcccaatcagagttaaccattttgaacaactgcattaaacaaaagttactggtatcatgctaagttagatgtgttgactgaggtatgagatccacat
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         350909 233 -   1771730 gcacataatagcagtgctatttagaatcacagtggtgtccaaatcacttctatcatatcgcattcaataccagaaaaaaagatgttaagtttattacagaatg-ccactgaagagccagtttttg-----------aaaaa------------------acttttttctcagtccaaactaactatttctggtgactccatcaaaccaaagttattggcatcatgctaagctagatgtgttgactgaagtatgagattcacat
i cebCap1.NW_016107755v1       I 39 C 0
s aotNan1.NW_018496904v1         221178 234 -    383796 gcacataatagcagtgctatttagaatcatagtggtgtccgaatcacttctatcacatgtcattcaatactacaacaaaagatgttaagtttattatagaatgcccactgaaaagccagtttttg-----------aaata------------------acttgtttctcaatttgaactaactattactgactactccatccaaccaaagttactggcatgatgctcagctagatgcattgactgatgtatgagattcacat
i aotNan1.NW_018496904v1       I 1 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16816500 5111 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002535v1           6585   0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random    98075 653 +    231697 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=15282.000000
s hg38.chr6_GL000254v2_alt      1037900 4 +   4827813 tttt
s panTro5.chr6                 30003530 4 + 175400573 tttt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30234199 4 + 173848474 tttt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6036591 4 +   6154872 tttt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74715884 4 + 122973662 tttt
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    98728 4 +    231697 tttt
i macFas5.chr4_KE145577_random I 653 C 0
s manLeu1.NW_012107142v1          82969 4 -    735854 ttct
i manLeu1.NW_012107142v1       C 0 C 0
s colAng1.NW_012115566v1        2816938 4 -   3067355 tttt
i colAng1.NW_012115566v1       C 0 I 2253
s cebCap1.NW_016107755v1         351142 4 -   1771730 tttt
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1         221412 4 -    383796 tttt
i aotNan1.NW_018496904v1       C 0 C 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16816500 5111 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e cerAty1.NW_012002535v1           6585 0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=731249.000000
s hg38.chr6_GL000254v2_alt      1037904 317 +   4827813 gtaaattaaaaccaa-----ttaggcaaatt---------tt-ttaaagtgaaatcaagtttatgagagaagtaaggaaacaaaagaatggctactcaatagac---acaacagc-------------------------------c------cttttttttaagtgtaggcaaatgttttttgaagatgatatttcaataagaaaattggcacttggggcatacttcaactaaatgtgagacaccttagttgaaacaaagacttattttcaagtcattatttttacggcacagaagtctttggaatatttgctctagttactctgggttctcaac--tgttgactcattgaagagaatattgttatt-------aaaggt
s panTro5.chr6                 30003534 317 + 175400573 gtaaattacaaccaa-----ttaggcaaatt---------tt-ttaaagtgaaatcaagtttatgagagaagtaaggaaacaaaagaatggctactcaatagac---acaacagc-------------------------------c------cttttttttaagtgtaggcaaatgttttttgaagatgatatttcaataagaaaattggcacttggggcatacttcaactaaatgtgagacatcttagttgaaacaaagacttattttcaagtcattatttttacggcacagaagtctttggaatatttgctctagttactctgggttctcaac--tgttgactcattgaagagaatattgttatt-------aaaggt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30234203 317 + 173848474 gtaaattacaaccaa-----ttaggcaaatt---------tt-ttaaagtgaaatcaagtttatgagagaagtaaggaaacaaaagaatggctactcaatagac---acaacagc-------------------------------c------cttttttttaagtgtaggcaaatgttttttgaaggtgatatttcaataagaaaattggcacttggggcatacttcaactaaatgtgagacatcttagttgaaacaaagacttattttcaagtcattatttttacggcacagaagtctttggaatatttgctctagttactctgggttctcaac--tgttgactcattgaagagaatattgttatt-------aaaggt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6036595 317 +   6154872 gtaaattacaaccaa-----ttaggcaaatt---------tt-ttaaagtgaaatcaagtttatgagagaagtaaggaaacaaaagaatggctactcaatagat---acaacagc-------------------------------c------cttttttttaagtgtaggcaaatgttttttgaagatgatatttcaataagaaaattggcacttggggcatatttcaactaaatgtgagacatcttagttgaaacaaagacttattttcaagtcattatttttatggcacagaagtctttggaatatttgctctagttactctgggttctcaac--tgttgactcattgaagagaatattgttatt-------aaaggt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74715888 330 + 122973662 gtaaatgaaaagcaatttggttaggcaattt---------tt-cctaagtgaaagcaagtttattagagaagtaaagaaacaaaagaacggctatgccataga----gcagaggt-------------------------------t------tttttttttaattgtaggcaaatatttagtgaggatgatatttcaataagaaaattggtgcttggggcatatttccactaaatttgagacatcttagacaaaacaaagacttattttctaggcattagttttatggcactgaagtcttggaacgatttgatctagttactctatgttctcaattgtgttaactcattgaggagaacattgttatttaataacaacgat
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    98732 337 +    231697 gtaagtgaaaagcaatttgattaggcaattt---------ttctctaagtgaatgcaagtttattagagaagtgaagaaacaaaagaacagctactccataga----gcagagTT-------------------------------GTTTTGTTTTTTTTTTTAATGTAggcaaatgtttagtgaagatgatatttcaataagaaaattggtgcttggggcatatttccactaaatttgagacatcttggacaaaacaaagacttattttcaaggcattagttttaagggactgaagtcttggaactatttgatctagttactctatgttctcaactgtgttaactcattgaagagaacattgttatttaataacaatggt
i macFas5.chr4_KE145577_random C 0 C 0
s manLeu1.NW_012107142v1          82973 323 -    735854 gtaaatgaaaagcaatttgattaggaaattt---------tt-tctaagtgaaagtaagtttattagagaagtaaagaaacaaaagaatggctactctataca----gcagagtt-------------------------------a------tttttttttaagtgtaggcaaatggttagtgaagatgacatttcaataagaaaattggtgtttggggcatatttccactaaatttgagacatcttagacaaagcaaagacttattttcaaggcattcattctatgggactgaagtcttggaactatttcatctagttactttatgttctcaactgtggtaatgcattgaggagaacattgttatt-------aaaggt
i manLeu1.NW_012107142v1       C 0 C 0
s cebCap1.NW_016107755v1         351146 364 -   1771730 gtaaaagaaaagcaatctgattaggc-aTTTTGCAATGTTTT-TCTaagtgaaagcaagtttgttagagaagtaaagaagcaaaacaagggctactccacagacagagcagAAtttttgttgtgttgtt-ttgttttgtttgtct-t------ttttttttttAGTGTAGGCAAATGTTTTATAAAGATGATATTTCAACAAGAAAATTGGCACTTGGAGCATACCTCCAGTAAATTTGCGACATCTTAGACAAAACAAAGACTTATCTTCAAGGCGGTATTTTT---GCATCGaagtcttgaaactatttgatctagttactccatgttctcaactgtgttaactcattgtagagaacattgttgtt----attaaacgc
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1         221416 363 -    383796 gtaaatgaaaagcaatctgattaggcaaTTTGGCAATGTCTT-TCTaagtgaaagcaagtttactagagaagtaaagaagcaaaataagggcagtaccacagacagagcagcGCT-------TGttgttgttgttttgtttgtttgt------tttgttttTTAGTGTAggcaaatgttttatgaagatgatattttaacaagaaaattggcacttggggcatacctccactaaatttgagacattttagacaaaacaaagactgattataaaggcattatttttacagcactgaagtcttggaactattagatctagttatgccatgttctcaactgtgttaactcactgaagagaacattgttgtt----attaaaggt
i aotNan1.NW_018496904v1       C 0 N 0
e saiBol1.JH378364                57834 7960 +    187130 I
e otoGar3.GL873550             16816500 5111 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1           6585   0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=2309644.000000
s hg38.chr6_GL000254v2_alt      1038221 708 +   4827813 atttgcaagaaaaactcagacatactattgtatcctctttctctgtctcaaacAGTTTTCCCCACAACACCCAAGGCTCTGTGATGTCTCAAACTTTTAATCATTAATTTAAAAAGAGAAGCTTAtcacagaattag---aagaaactattttaaaattcatatggaaccaaaaaagagctcatatagcccggacaatcctaca-------caaaaagaacaaagcaggcggcctcagactacctgatttcaaactatactac-aggctacagtaaccaaaacagcatggta-------------------atagactaatggaagagagtagagaactcagaaataaaaccgcatatctaaaaccatctgatcttcaacaaacctgatgaaaacaagcaacagggaaatgattccatatttaataaatgatgttgggaaaacgggctagccatttgcagaaaactgaaactggaccccttccttacatcttacacaaaaattaactctagatggattaaagacctaaatgtaaaacccaaaactataaaaacccaagaagaaaatctaggcaataccattt---gcctgggcatgggcaaagattttatgatgaaatcgccaaaagcatctgccacaaaagcaaaaactgacaaatgggatctaattaaactaaagagcttctgcacaggaaaagacactgtgatcagagtgaacagacaacctacagaatgaaagaaaa
s panTro5.chr6                 30003851 708 + 175400573 atttgcaagaaaaactcagacatactattgtatcctctttctctgtctcaaactgttTTCCCCACAACACCCAAGGCTCTGTGATGTCTCAAACTTTTAATCATTAATTTAAAAAGAGAAGCTTAtcacagaattag---aagaaactattttaaaattcatatggaaccaaaaaagagctcatatagccaggagaatcctaca-------caaaaagaacaaagcgggcggcctcagactacctgatttcaaactatactac-aggccacagtaatcaaaacagcatggta-------------------atagactaatggaagagaatagagaactcagaaataaaaccacatatctaaaaccatctgatcttcaacaaacctgatgaaaacaagcaacagggaaatgattccatgtttaataaatggtgttgggaaaacgggctagccatttgcagaaaactgaaactggaccccttccttacatcttacacaaaaattaactctagatggattaaagacctaaatgtaaaacccaaaactataaaaacccaagaagaaaatctaggcaataccattt---gcctgggcatgggcaaagattttatgatgaaatcgccaaaagcatctgccacaaaagcaaaaactgacaaatgggatctaattaaactaaagagcttctgcacaggaaaagacactgtgatcagagtgaacagacaacctacagaatgaaagaaaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30234520 708 + 173848474 atttgcaagaaaaactcagacatactattgtatcctctttctctgtctcaaactgttTTCCCCACAACACCCAAGGCTCTGTGATGTCTCAAACTTTTAATCATTAATTTAAAAAGAGAAGCTTAtcacagaattag---aagaaactattttaaaattcatatggaaccaaaaaagagctcatatagccaggacaatcctaca-------caaaaagaacaaagcgggcggcctcagactacctgatttcaaactatactac-aggccacagtaatcaaaacagcatggta-------------------atagactaatggaagagaatagagaactcagaaataaaaccacatatctaaaaccatctgatcttcaacaaacctgatgaaaacaagcaacagggaaatgattccatgtttaataaatggtgttgggaaaacgggctagccatttgcagaaaactgaaactggaccccttccgtacatcttacacaaaaattaactctagatggattaaagacctaaatgtaaaacccaaaactataaaaacccaagaagaaaatctaggcaataccattt---gcctgggcatgggcaaagattttatgatgaaatcgccaaaagcatctgccacaaaagcaaaaactgacaaatgggatctaattaaactaaagagcttctgcacaggaaaagacactgtgatcagagtgaacagacaacctacagaatgaaagaaaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6036912 708 +   6154872 atttgcaaaaaaaactcagacatactattgtatcctctttctctgtctcaaactgttTTCCCCACAACACCCAAGGCTCTGTGATGTCTCAAACTTTTAATCATTAATTTAAAAAGAGAAGCTTAtcacagaattag---aagaaactattttaaaattcatatggaaccaaaaaagagctcatatagccaggacaatcctaca-------caaaaagaacaaagtgggcggcctcagactacctgatttcaaactatactac-aggctacagtaaccaaaacagcatggta-------------------acagactaatggaagagagtagagaactcagaaataaaactgcatatctaaaaccatctgatcttcaacaaacctgatgaaaacaagcaacagggaaatgattccatatttaataaatggtgttgggaaaacgggctagccatttgcagaaaactgaaactggaccccttccttacatcttacacaaaaattaactctagatggattaaagacctaaatgtaaaacccaaaactataaaaacccaagaagaaaatctaggcaataccattt---gcctgggcatgggcaaagattttatgatgaaatcgccaaaagcatctgccacaaaagcaaaaactgacaaatgggatctaattaaactaaagagcttctgcacaggaaaagacactgtgatcagagtgaacagacaacctacagaatgaaagaaaa
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74716218 730 + 122973662 attggcaagaaaatctcagagatactgttgtatctcctttctctgtcttgaactgttTTCCCCTCAGCACCCAAGGCTCTGTGATGTCTCAAATTTTTAATTATAAATTTTAAAAGAGAAGCTTAtcatggaattag--aaaaaaactattttacaatgcatatggatcc-aaaaagagctcgtatagccaggagaatcctaag-------caaaaagaa-aaagctagaggcatcaggctacctgacttaaaactctactacaaggctacagtaaccaaaacagcatggtactggtacaaaaacaggcacatagaccaatggaacagaatagagaactcagaaaggagaccacgtatctacaactatttgatctttaaaaaacctgacaaaaacaagcaatggggaaatgattccctatttcataaatggtgctgggagaactggctagccataggcagaaaattgaaactggaccccttccttatactttacacaaaagttaactcaagatgggttaaaaacttaagtgtgaaacccaaaactagaaaaaccctggaagaaaatctaggcaataccattcaggatatatgcatgagcaaagattttatgatgaaatcgccaaaagcatataccactaaagcaaaaattgacaaatgggatctaattaaacaaaagagcttctgcacagcaaaagaaactatcatcagagcaaacagacatcctacagagtgggagaaag
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    99069 692 +    231697 attgccaggaaaaacttagagatactgttgtatttccttactctgt----------------ctcaGCACCCAAAGCTCTGTGAT-TCTCAAACTTTTAATCACGAATTTAAAAAGAGAAGCTTAtcatggaattag--aaaaaaactattttaaaattcatatggatcc-aaaaagagcttgtacagccagaagaatcctaagaaaaaaaaaaaaaaaa-aaagctggaggcatcaggctacccgacttaaaactatactacaaggc----------------------------tacaaaaacagtcacataaaccaatgggacagaatacagaactcagaaaagagaccgcacaactacaactatttgatcttcaacaaacctgacaaaaacaagcaatggggaaaggattccctgtttaataaatgatgctgggagaactggctagccatatgcagagaattgaaactggacccctttcttacattttacacaaaagttaactcaagatggattaaagacttaaatgtaaaacccaaaactagaaaaacacgggaagaaaatctaggcaataccattccggacataggcatgggcaaagattttatgatgagatcgccaaaagcatctgccacaaaagcaaaacttgataaatgggatctaattaaacaaaagagcttctgcacagcaaaagaaattatcatcagagcaaacagacatcctaccgaacgggagaaaa
i macFas5.chr4_KE145577_random C 0 C 0
s manLeu1.NW_012107142v1          83296 730 -    735854 attggcaagaaaaactcagagatactgttgtatctcctttctctttctcaaactgttTTCCCCTCAGCACTCAAGGCTCTGTGATATCTCAAACTTTTATTCATGAATTTAAAAAGGTAAATTTACTTTGgaattag--aaaaagactattttaaaattcatatggatcc-aaaaagagctcgtatagccaggggaatcgtaag-------caaaaagaa-aaagttagaggcatgaggctacctgacttaaaactatactacaaggctgcagtaaccaaaacagcatgatactggtacaaaaacaggcatatagaccaatggaacagaatagagaactcagaaaagagactgcacatctacaaccatttgatcttcaacaaacctgacaaaaacaagcaatggggaaaggattccctatttaataaatggtgctgggagaactggctagccatatgcagaaaattgaaactggaccccttccttacactttacaaaaaagttaactcaagatggattaaagagttaaatgtaaaactccaaactagaaaaaccctggaagaaaatttaggcaataccattccagacatagggatgggcaaagattttatgatgaaatcgccaaaatcatctgccacaaaagcaaaaattgacaaatgggatctaattaaacaaaagagcttctgcacagcaaaacaaactatcatcagagcaaacagacatcctacggaatgggagaaaa
i manLeu1.NW_012107142v1       C 0 C 0
s saiBol1.JH378364                65794 727 +    187130 ATTTGTAAGAAAAACTCAGGCGTATTGTTGAATCTCCTTTGTCTGTCGCAATCTGTTTTTCCCTCAGCACCCAACGCTCTGTGATGTCTTAAACTCTTAATCA-----TTAAAAAGAGAAGCTTAtcacagaattag--aaaaaaactattttacaatccatatggatccaaaaaagagcttgtatagccaggagaatcttaag-------caaaaagaacaaagctggaggcatcaggctacctgatttaaaactatactacaaggctacagtaaccaaaacagcatggtaatggtacaaaaacaggcacatagactaatggaacagaatagagaattcagaaataagaccgcacatctacaaccatttgatctttaacaaacctgacaaaaacaggcagtggggaaaggattctctatttaagaaatggtactgggagaactggctagccatatgcagaaaattgaaactggaccccttccttacaccttacacaaaaattaattcaagatgaattaaagacttaaatgtaaaactcaaaactataaaaaccctgggaaaaaatctaggcaatactgtttaggacataggcatcagcaaagattttatgatgaaattgccagaagcaactgccacaaaagcaaaaattaacaaatgggatctaattaaacaaaagagcttctgcacaggaaaagaaactaccatcagagtgaacagacatcctacagaatagaagaaaa
i saiBol1.JH378364             I 7960 I 12
s cebCap1.NW_016107755v1         351510 730 -   1771730 atttgcaagaaaagctcagagatattgttgaatctcctttttctgtctcaaactgttTTCCCCTGAACACCCAAGGTTCTGTGATGTCTCAAACTTTTAATCATTAATTTAAAAAGAGAAGCTTAtcacggaattag--aaaaaaactattttaaaattcatatggatccaaaaaagaccccgcatagccaggagaatcctaaa-------caaaaagaacaaagctgcaggcatcaggcttcctgacttgaaactatgctacaagg-tagagtaatgaaaacagcacggtaatggtacaaaaacaggcacatagaccaatggaacagaatagagaactcagaaataagaccacacatctacaaccatttgatcttcaacaaacctgacaaaaacaagcaatggggaaacgattctctaattaat-aatggtgctgggagaactggctagccatatgcagaaaattgaaactggaccccttccttacaccttacacaaaaattagctcaagattgattaaagacttaaaagtaaaacttaaagctataaaaaccctggaagaaaatctaggcaataccattcagaacatagacattggcaaagattttatgaccaaattgccaaaagcaacggccacaaaagcaaagattgtcaaatgttatctaattaaacaaaaaagcttcttcacagcaaaaggaattatcatcagagtaaacagacatcctacagaatgggagaaaa
i cebCap1.NW_016107755v1       C 0 I 12
s aotNan1.NW_018496904v1          90776 734 -    383796 ATTTTCAAGAAAAACTCAGAGATATTGTTGAATATCCTTTCTCTGTCTTAAACTGTTTCTTCCTCAGCACCCAAGGCTCTGTGATGTCTTAAACTTTTAATCATTAATTTAAAAAGAGAAGCTTAtcacagaattagtaaagaaaatgattttaaaattcatgtggatccaaaaaagagtttgaatagccaggagaatcttaag-------caaaaagaacaaagctggaggcatcaggctatctgacttaaaactatagtacaaggctacagtaaccaaaacagcatggtaatggtataaaaacagtcacatagactaatagaacagaatagagaactcagaactaagactgcacatctacaaccatttgatcttcaacaaacctgacaaaaacaagcaatggggaaaggattccccatttgatatatggtgctgggagaactggctagccatatgcagaaaattgaaagtggactgcttccttacaccttacacaagaaaaaactcaaggtggattaaagacttaactgtaaaactcaaaactataaaaaccctggaagaaaatctaggcaataccattcaggacataggcataggcaaagatgttataatgaaactgccaaaagcaactgtcacaaaagcaaaaattagtaaatggaatctaattaaacaaaggagtttctgcacagcaagagaaactaccatcagagtgaagagacatcctacagaatgggagaaaa
i aotNan1.NW_018496904v1       N 0 N 0
e otoGar3.GL873550             16816500 5111 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1           6585   0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=2200345.000000
s hg38.chr6_GL000254v2_alt      1038929 692 +   4827813 tttttgtaatctatccatctgacaa---------agatctaatatccacaatctacaaggaaattaagcaaatttaca-agaaaataacaaacaaccccattaaaaagtgggcaaatgacatgaacagacacttctcaaaagaagacatacatgtggccaacaaacatatgaaaaaaagctcatcatcactggtcattagagaaatgcaaatcaaaaccac-aatgagataccatctcatgccagtcagaatggtgattattaaaaagtcaagaaacaacagatactggcaaggttgcagggaaataggaatgctttaac--tgttggtgggaatgtaaattagttcaaccattgtggaagacaatatgacgattcctcaaagatctagaactagaaataccatttgacccagcaatcccattactgggtatatacccaaagaaatataaatcattctattataaagttacatccatgtgtatgttcattgcagcaccactcacaatagcaaagacatggaatcaacctaaatgcgcatcaacaatagactggataaagaaaacatatgacatgtacaccaaggaatactatgcagccttaaaaaggaaggagatca--tgttttgcagggacatggaaaaagctg---gaagccattatcctcaacaaactaatgcagaaacagaaaaacaaacactgcatgttctcac
s panTro5.chr6                 30004559 692 + 175400573 tttttgtaatctatccatctgacaa---------agatctaatatccacaatctacaaggaaattaagcaaatttaca-agaaaataacaaacaaccccattaaaaagtgggcaaatgaaatgaacagacacttctcaaaagaagacatacatgtggccaacaaacatatgaaaaaaagctcatcatcactggtcattagagaaatgcaaatcaaaaccac-aatgagataccatctcatgccagtcagaatggtgattattaaaaagtcaagaaacaacagatactggcaaggttgcagggaaataggaacgctttaac--tgttggtgggaatgtaaattagttcaaccattgtggaagacaatatgacgattcctcaaagatctagaactagaaataccatttgacccagcaatcccattactgggtatatacccaaagaaatataaatcattctattataaagttacatccatgtgtatgttcattgcagcaccactcacaatagcaaagacatggaatcaacctaaatgcccatcaacgatagactggataaagaaaacatatgacatgtacaccatggaatactatgcagccttaaaaaggaaggagatca--tcttttgcagggacatggaaaaagctg---gaagccattatcctcaacaaactaatgcagaaacagaaaaacaaacactgcatgttctcac
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30235228 692 + 173848474 tttttgtaatctatccatctgacaa---------agatctaatatccacaatctacaaggaaattaagcaaatttaca-agaaaataacaaacaaccccattaaaaagtgggcaaatgaaatgaacagacacttctcaaaagaagacatacatgtggccaacaaacatatgaaaaaaagctcatcatcactggtcattagagaaatgcaaatcaaaaccac-aatgagataccatctcatgccagtcagaatggtgattattaaaaagtcaagaaacaacagatactggcaaggttgcagggaaataggaacgctttaac--tgttggtgggaatgtaaattagttcaaccattgtggaagacaatatgacgattcctcaaagatctagaactagaaataccatttgacccagcaatcccattactgggtatatacccaaagaaatataaatcattctattataaagttacatccatgtgtatgttcattgcagcaccactcacaatagcaaagacatggaatcaacctaaatgcccatcaacgatagactggataaagaaaacatatgacatgtacaccatggaatactatgcagccttaaaaaggaaggagatca--tcttttgcagggacatggaaaaagctg---gaagccattatcctcaacaaactaatgcagaaacagaaaaacaaacactgcatgttctcac
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6037620 692 +   6154872 tttttgtaatctatccatctgacaa---------agatctaatatccacaatctacaaggaaattaagcaaatttaca-agaaaataacaaacaaccccattaaaaagtgggcaaatgaaatgaacagacacttcttaaaagaagacatacatgtggccaacaaacatatgaaaaaaagctcatcatcactggtcattagagaaatgcaaatcaaaaccac-aatgagataccatctcatgccagtcagaatggtgattattaaaaagtcaagaaacaacagatactggcaaggttgcagggaaataggaacgctttaac--tgttggtgggaatgtaaattagttcaaccattgtggaagacaatatgacgattcctcaaagatctagaactagaaataccatttgacccagcaatcccattactgggtatatacccaaagaaatataaatcattctattataaagttacatccatgtgtatgttcattgcagcaccactcacaatagcaaagacatggaatcaacctaaatgcccatcaacgatagactggataaagaaaacatatgacatgtacaccatggaatactatgcagccttaaaaaggaaggagatca--tcttttgcagggacatggaaaaagctg---gaagccattatcctcaacaaactaatgcagaaacagaaaaacaaacactgcatgttctcac
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74716948 694 + 122973662 tttgtgcaatctatccatctgacaa---------aggtctaatattcagaatctacaaagaacttaagcaaatttaca-tgaaaata--aaacaacttcattaaaaagtgggcaaaggacatgaacagaaacttctaaaaagaagacgtgcatgtggccaacaaaaatatgaaaaaaagctcaacatcactgatcattacagaaatgcaaatcaaaaccacaaatgagataccatctcatgccagtcagaatggcaattattaaaaagccaagaaacaacagatgctggcgaggttgcagagaaataagaaggcttttaca-tggttgtggaaaagtaaatcagttaatccattgtggaagacagtgtggtgattcctcaaagatttagaaccagaaataccattcgacccagcagtcccattacagggcttatacccagaggaatataaatcattctattataaaggtatatgcatgtttacattcattgcagcactattcacaatagcaaagacatggaatcaacccaaatgcccatcaatgatggactggataaagaaaatatggtatatatacaccacagaatattatgcagccataaaaaggaatgagatcaagtcctttgcagagatatggattaagctg---gaagccattatcctcagaaaactaacacaggaacagaaaaccaaacaccacatgtcctcat
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random    99761 688 +    231697 tttgtgcaatctactcatctgacaa---------aggtctaatattcagaatctacaaagaacttaagcaaatttaca-tgaaaa----aaacaacttcattaaaaagtggacaaaggatttgaacagacacttctc-----aagatgtacatgcgtccaacaaaaatatgaaaaaaaggtcaacatcacggatcattacagaattgcaaatcaaaaccacaaatgagataccatctcatgccagtcagaatggcaattattaaaaagtcaagaaacaacagatgctggcaaggttgcagagaaatagaaatgcttttacactgttggaggaaaagtaactcagttaatccattgtggaagacagtgtggcaattcctcaaagatttagaaccggaaataccatttgacccagcaatcccaatacaagatatatacccaaaggaatataaatcattctattacaaagttatatgcatgtttacattcattgcagcactattcacaatagcaaaaacatggaacctacccaaatgcccatcaatgatgaacttgataaagaaaatatggtacatatacaccatagaatatcatgcagccacaaaaaggaatgagatcaagtccttttcagtgatatggatgaagctg---gaagccattatcctcagcatactaacacaggaacagaaaaccaaacaccacatgttctcat
i macFas5.chr4_KE145577_random C 0 C 0
s manLeu1.NW_012107142v1          84026 692 -    735854 tttgtgccatctatccatctgatca---------aggtctaatatttagaatctacaaagaacttaagcaaatttaca-tg-aaa----aaacaacttcattaaaaagtggacaaaggatatgaacagacacttctcaaaggaagacgtacacgtggccaacaaaaatatgaaaaaaaggtcaacatcaccgataattacagaagtgcaaataaaaaccacaaatgagataccatctcatgccactcagaatagcaattattaaaaagtcaagaaagaacagatgctggcgaggttgcggagaaataggaatgattttacactgttggtggaaaagtaaattgattaatccattgtggaagacagtgtggcgattcctcaaagatgtagaaccagaaataccatttgacccagcaatcccattacagggtatatacccaaaggaatataaatcattctgttataaagatatatgcatgtttacattcattgcagcactattcacaatagcaaagacatggaatcaacccaaatgcccatcagtgatggatgggatgaagaatatatggtacatatacaccat-gaatattattcagccataaaaatgaattcgatcaagtcctttgcagggataaggatgaagctgggtgaagccgttatcctcagcaaacta--acaggaacagaaaatcaaacatcatacgctctcat
i manLeu1.NW_012107142v1       C 0 C 0
s saiBol1.JH378364                66533 697 +    187130 atctttcaacatatccatctgacaattgatgcagaggtctaatattcagaatctacaaataacttaggcaaagttaca-taata-----aaacaacttac-taaaaagtagaaaaagtacatgaacagacacttctcaaaag-agacatacatgcagccaacaaatatatttttaaaagctgaacatcactaataattagagaaatgcaaatcaaaatcac-aataagataccatctcatgccagtcagaatggcaattattaaaaagtcaagaaacaacagatgctggtgaagttgcagagaaataggaatgcttttacactgttggtagaaatgtaaattggttcaaccattgtggaagacagggtggcaattcctcaaagatctagaacaatctaaatc-tttgacctaccaatcccattacagggtatatacccaaaggaatagaaatcattttattataaagatagatgcatgtgtatgttcattgcagcactattcacaatagcaaagacatgaaatcaacccaaatacccatcaatgatggactggataaataaaatgtggtacatctacaccatggaatattatgcagccataaaaaggaatgagatcaagtcctttgccaggatatggatgaagctg---gaagccattatcctcagcgaactaacacaggaacagaaaaacatacactgcatattctcat
i saiBol1.JH378364             I 12 C 0
s cebCap1.NW_016107755v1         352252 683 -   1771730 atctttcaatatatccatctgacaa---------aagtctaatattcagaatctacaaataacttaggtaaatttaca-tgaaa-----aaacaactttcttaaaaagtggactaaggacatgaacagacacttctcaaaagaagacatacatgcagccaacaaacatattttaaaaagctgaacatcactgactgttggagaaatgcaaatcaaaattac-agtaagataccatctcatgccatgcagaatggcaatttttaaaaagtcaagaaacaacagatgctggagaagctgacgagaaataggaatgcttttacactgctagtggaaatgtaaattggttcaaccattgtggaagacagtgtggcaattccttaaagatttagaaccagaaataccatttcacccagcaatctcattacagggtatatacccaaaggaatataaatcattttattataaagatatctgcacatgtatggtcactgcagcactcttcacaatagcaaagacatgaaatcaacccaaatgcccatcaatgatggactggacaaataaaatgtggtacatctacaccatggaatattacacagccctaaaatggtatgagatcaagtcctttgcagggatatggatgaagctg---gaggccattaacctcagca----aacacaggaacagaaaaccatacactgcatgttc----
i cebCap1.NW_016107755v1       I 12 C 0
s aotNan1.NW_018496904v1         222530 692 -    383796 atctttcaaaatatccatctgacaa---------aggtctaatattcagaatctacaaataaattatgcaaatttacactaaaa-----aaaccactttcttaaaaagtggacaaagaacatgaacagatacttctcaaaataatatatacatgcagccaacaaacatatttgaaacaactgaacatcactgatcattagagaaatgcaaatgaaaaccac-aatgagatacaatctcatgccagtcagaatggcaattattaaaaagtcaagaaacaacagatgctcgggaagttgaggagaaataggaaggcttttacactgttggtggaaacgtaaattggttcaaccattgtggaagacagtgtggcaattcctcaaatatttagaactagaaataccatatcacccagcaatcccattacaaggtatatacccaaaggaatataaatcattttattataaagatagctgcatgtgtgtgttcattgcagcactattcacaatggcaaagacatgaaatcaacccaaatgcccatcaatgatggactggatctataaaatacagtacacctacaccaaggaatattatgcagtcttgaaaaggaatgagatcaagtcctttgcagggatatggatgaagctg---gaggccattatcctcagcaaactaacacaggaacagaaaaccacacactgcatgttctcac
i aotNan1.NW_018496904v1       N 0 C 0
e otoGar3.GL873550             16816500 5111 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1           6585   0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=916562.000000
s hg38.chr6_GL000254v2_alt      1039621 227 +   4827813 tgataattgggagctgagcaatgagaatccatgggcactgggaggggaaca-------ctgtgtccttttgggggagggcagaggtggggtgcgcattaggaaaaatagctcattcatgctaggcttaatacctaggtgctgggttgataagtgtagcaaaacaccatggcacacgtttacctatgtaacaaatctgcacatcctgcatatgtaccctgaaacttaaaataa----aa
s panTro5.chr6                 30005251 234 + 175400573 ttataattgggagctgagcaatgagaatccatgggcaccgggaggggaacaacacacactgtgtccttttgggggagggcagaggtggggtgcgcattaggaaaaatagctcattcatgctaggcttaatacctaggtgctggggtgataagtgtagcaaaacaatatggcacacgtttacctatgtaacaaacctgcacatcctgcatatgtaccctgaaacttaaaataa----aa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30235920 234 + 173848474 ttataattgggagctgagcaatgagaatccatgggcaccgggaggggaacaacacacactgtgtccttttgggggagggcagaggtggggtgcgcattaggaaaaatagctcattcatgctaggcttaatacctaggtgctggggtgataagtgtagcaaaacaatatgtcacacgtttacctatgtaacaaacctgcacatcctgcatatgtaccctgaaacttaaaataa----aa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6038312 234 +   6154872 ttataattgggagctgagcaatgagaatccatgggcaccgggatgggaacaacacacactgtgtccttttgggggagggcagaggtggggtgcgcattaggaaaaatagctcattcatgctaggcttaatacctaggtgctgggttgataagtgtagcaaaacaccatggcacacgtttacctatgtaacaaacctgcacatcctgcatatgtaccctgaaacttaaaataa----aa
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74717642 238 + 122973662 ttataattgggaactgagcaatgagaacacatggacctaggaagaggaacaacatacactggggcctgttgggggagggtggtggtggggggatcattagcaaaaatagctaatgcatgccagggttaatacctaggtgatgggttgataggtgcggcaaaccaccacggcacacgtttacctatgtaacaaacctgcacatcctgcacatgtaccctgaaacttaaaattaaattaa
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random   100449 233 +    231697 ttataattgggaactgagcaatgagaacacatggacacagggagatgaacaatacacactggggcctcttgggagagggcagtggttgggggatcattagcaaaaatagctaatgcatgccagggttaatacctaggtgatgagttgataggtgcagcaaaccaccatggtacatatttacctatgtaacaaacctgcacatcctgcacatgtatcctggaacttaaaatt-----aa
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1         185247 223 -    863181 gtataattgagagctgagcaatgagaacacatggacacagggagaggaacaacacacactgggg----------gagggtggtggtgggggtagtattaggaaaaatgactaacgcatgcagtggttaatacctaggtgatgggttgactggtgcagcaaaccaccatggaacatgtttacctatgtaacaaacctgcacatcctgcacgtgtaccctggaacttaaaata-----aa
i cerAty1.NW_012002535v1       n 0 C 0
s manLeu1.NW_012107142v1          84718 228 -    735854 ttataattgggaactgagcaatgagaacacatggacacagggagaggaacaacacacactggggcatgttgggggagggtgg-----gggggatcattagcaaaaacagctaatgcatgccagggttaatacctaggtgatgagttgataggtgcagcaaaccaccatggcacatgtttgcctatgtaacaaacctgcacatcctgcacatgtaccctggaacttaaaatt-----aa
i manLeu1.NW_012107142v1       C 0 C 0
s saiBol1.JH378364                67230 234 +    187130 gtataattgagagctgggcaatgagaacacagggacacagggagaggaacaacacacactggggcctgttgtaggagggtggtggtggggggagcattaggaaaaatacctaatgcatgccaggcttcatacctaggtgatgggttgataggtgcagcagaccaccatggcacatgttgacctatgtaacaaacctgcacatcctgcacatgcaacctagaacttaatatga----aa
i saiBol1.JH378364             C 0 I 5
s cebCap1.NW_016107755v1         352935 232 -   1771730 --ataattgagagctgagcaatgagaacacatggacacagggagaggaacaacacacactggggcctgttgtgggagggtggtggtgaggggagcattaggaaaaatacctaatgcatgccaggcttcatacctaggtgatgggttgataggtgcagcagaccaccatggcacatgtttacctatgtaacaaacctgcacatcctgcacatgtaccctggaacttaaaatga----aa
i cebCap1.NW_016107755v1       C 0 I 5
s aotNan1.NW_018496904v1         223222 234 -    383796 atgtaattgagagctgagcaacgagaacacagggacacagggagaggaacaacacacactggggcctgttgtgggagggtggtggtgggggaagcattaggaaaaatacctaatgcatgccaggcttcatacctaagtgatgggttgataggtacagcaaaccaccatggcacacgtttacctatgtaacaaacctgcacatcctgaacgtgtaccctagaacttaaaatga----aa
i aotNan1.NW_018496904v1       C 0 I 96
e otoGar3.GL873550             16816500 5111 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=13828.000000
s hg38.chr6_GL000254v2_alt      1039848 6 +   4827813 attaaa-
s panTro5.chr6                 30005485 6 + 175400573 attaaa-
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30236154 6 + 173848474 attaaa-
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6038546 6 +   6154872 attaaa-
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74717880 6 + 122973662 attaaa-
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random   100682 6 +    231697 attaaa-
i macFas5.chr4_KE145577_random C 0 I 1
s cerAty1.NW_012002535v1         185470 6 -    863181 ataaaa-
i cerAty1.NW_012002535v1       C 0 I 33
s manLeu1.NW_012107142v1          84946 6 -    735854 attaaa-
i manLeu1.NW_012107142v1       C 0 I 1
s saiBol1.JH378364                67469 6 +    187130 -ttaaaa
i saiBol1.JH378364             I 5 C 0
s cebCap1.NW_016107755v1         353172 6 -   1771730 -ttaaaa
i cebCap1.NW_016107755v1       I 5 C 0
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223456 96 -    383796 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=17306.000000
s hg38.chr6_GL000254v2_alt      1039854 21 +   4827813 a-agaaGC---------------------------------TTAAA--GCATTAAAG
s panTro5.chr6                 30005491 21 + 175400573 a-agaagc---------------------------------ttaaa--gcattaaag
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30236160 21 + 173848474 a-agaagc---------------------------------ttaaa--gcattaaag
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6038552 21 +   6154872 a-agaagc---------------------------------ttaaa--gcattaaag
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74717886 22 + 122973662 agaCAAGC---------------------------------TTAAA--GAGTTAATG
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random   100689 21 +    231697 -gaCAAGC---------------------------------TTAAA--GAGTTAATG
i macFas5.chr4_KE145577_random I 1 C 0
s manLeu1.NW_012107142v1          84953 21 -    735854 -gaCAACC---------------------------------TTAAA--GAGTTAATT
i manLeu1.NW_012107142v1       I 1 C 0
s saiBol1.JH378364                67475 56 +    187130 -gaCAAGGTTAAAGtattatttaaaattaaattaaaaGAGTTTAAACCATATTAAAC
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         353178 23 -   1771730 -gaCAAGG---------------------------------TTAAACCATATTAAAG
i cebCap1.NW_016107755v1       C 0 C 0
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223456 96 -    383796 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1         185476 33 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=77748.000000
s hg38.chr6_GL000254v2_alt      1039875 26 +   4827813 AAAAATAATCACATGAAAGAAGCATT
s panTro5.chr6                 30005512 26 + 175400573 aaaaataatcacatgaaagaagcatt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30236181 26 + 173848474 aaaaataatcacatgaaagaagcatt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6038573 26 +   6154872 aaaaataatcacatgaaagaagcatt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74717908 26 + 122973662 AAAAATAATTAGATAAAAGAAGACTT
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random   100710 26 +    231697 AAAAATAATTAAATAAAAGAAGCCTT
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1         185509 24 -    863181 AAAAATAATTAGATGAA--AAGCCTT
i cerAty1.NW_012002535v1       I 33 C 0
s manLeu1.NW_012107142v1          84974 26 -    735854 AAAAATAATTAGATAAAAGAAGGCTT
i manLeu1.NW_012107142v1       C 0 C 0
s saiBol1.JH378364                67531 26 +    187130 AAAAATAATTAGATAAAAGAAGGCTT
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         353201 26 -   1771730 AACAATAATTAGACAAAAGAAGCCTT
i cebCap1.NW_016107755v1       C 0 C 0
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223456 96 -    383796 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=590575.000000
s hg38.chr6_GL000254v2_alt      1039901 156 +   4827813 TGATTTACAAAATCCTGAAATAATAATTTTAATTTtgctttcaacatttatgcaaatcccttgatactcctcccttccaatggtgcagcttaattccttccctgtgagttcggcttggacttaatgatgcacttctgatatggcctcgccctgtgt
s panTro5.chr6                 30005538 156 + 175400573 tgatttacaaaatcctgaaataataattttaattttgCTTTCaacatgtatgcaaatcccttgatactcctcccttccaatggtgcagcttaattccttccctgtgagttcggcttggacttaatgatgcacttctgatatggcctcaccctgtgt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30236207 156 + 173848474 tgatttacaaaatcctgaaataataattttaattttgCTTTCaacatgtatgcaaatcccttgatactcctcccttccaatggtgcagcttaattccttccctgtgagttcggcttggacttaatgatgcacttctgatatggcctcaccctgtgt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6038599 156 +   6154872 tgatttacaaaatcctgaaataataattttaattttgCTTTCaacatgtatgcaaatcccttgatactcctcccttccaatggtgcagcttaattccttccctgtgagttcgccttggacttaatgatgcacttctgatatggcctcaccctgtgt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74717934 155 + 122973662 TGATTTTCAAAAACCTGAAACAATAGTTATAATTTTGCAtttaacatatattcaaatcctttaatactgttcccttccagaggtgcagcttaattccctctct-tgagtgtggcttggacttaatgaggcacttctgatatggcctggttctgtgt
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random   100736 155 +    231697 TGATTTTGAAAAACCAGAAACAATAGTTTTAATTTtgcttttaacatatattcaaatcctttgatactgttcccttccagagatgcagcttaattccctcgct-tgagtgtggcttggacttaatgaggcacttctgatgtgtactggctctgtgt
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1         185533 154 -    863181 TGA-TTTAAAAATCCTGAAACAATAGTTTGCATTTtgcttttaacatatatgcaaatcctttaatactgtcctcttccagaggtgcagcttaattccctctct-tgagcatggcttggacttaatgatgcacttctgatatggcctggctccctgt
i cerAty1.NW_012002535v1       C 0 C 0
s manLeu1.NW_012107142v1          85000 155 -    735854 TGATTTTCAAAAACCTGAAACAATCATTATAATTTtgcttttaacatatattcaaatcctttgatactgttcccttccagaggtacagcttaattccctcgct-tgagtgtggcttggacttaatgatgcacttctgaaagggcctggctctgtgt
i manLeu1.NW_012107142v1       C 0 C 0
s saiBol1.JH378364                67557 155 +    187130 TGGTTTACAAAATCCTGAAACAATACTTTTAATTTTGCTTTCGACATatatgccaatcctttaatactgctcccttccagacgtgcagcttacttccctttct-tgagtgtggcttggacttaccgatgcacttctgacatagcctggctctgtgt
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         353227 155 -   1771730 CAATTTACAAAATCCTGAAATAATACTTCCAATTTtgctttcaacatatacgcaaatcctttaatactgctcccttccagaggtgcagcttacttccatctct-tgagtgtggcttggacttaatgatgcacttcCgatatggcctggctctgtgt
i cebCap1.NW_016107755v1       C 0 I 889
s aotNan1.NW_018496904v1         223552 138 -    383796 TGATTTACCAAATCCTGAAATAATACTTTTAATTTT-----------------aaatcctttaatactgttcccttccagaagtgcagtttacttccctctct-tgagcatggcttggacttaatgatgcacttctgatgtggcctggctctgtgt
i aotNan1.NW_018496904v1       I 96 C 0
e otoGar3.GL873550             16816500 5111 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=76038.000000
s hg38.chr6_GL000254v2_alt      1040057 24 +   4827813 ccccacccaaa-ctcatct------------tgaatt
s panTro5.chr6                 30005694 24 + 175400573 ccccacccaaa-ctcatct------------tgaatt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30236363 24 + 173848474 ccccacccaaa-ctcatct------------tgaatt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6038755 24 +   6154872 ccccacccaaa-ctcatct------------tgaatt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74718089 37 + 122973662 tcccacccaaatctcatcttgaattgtcatgtgaatt
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random   100891 25 +    231697 tctcacccaaatctcatcc------------tgaatt
i macFas5.chr4_KE145577_random C 0 I 12
s cerAty1.NW_012002535v1         185687 25 -    863181 ccccacccaaatctcatct------------tgaatt
i cerAty1.NW_012002535v1       C 0 n 0
s manLeu1.NW_012107142v1          85155 25 -    735854 tcccacccaaatctcatct------------tgaatt
i manLeu1.NW_012107142v1       C 0 I 12
s saiBol1.JH378364                67712 25 +    187130 tcccaccaaaatctcattt------------tgaatt
i saiBol1.JH378364             C 0 I 12
s aotNan1.NW_018496904v1         223690 25 -    383796 tcccacctgaatctcatct------------tgaatt
i aotNan1.NW_018496904v1       C 0 T 42609
e otoGar3.GL873550             16816500 5111 -  18854210 I
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=5348.000000
s hg38.chr6_GL000254v2_alt      1040081 2 +   4827813 gt
s panTro5.chr6                 30005718 2 + 175400573 gt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30236387 2 + 173848474 gt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6038779 2 +   6154872 gt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74718126 2 + 122973662 gt
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random   100928 2 +    231697 gt
i macFas5.chr4_KE145577_random I 12 C 0
s manLeu1.NW_012107142v1          85192 2 -    735854 gt
i manLeu1.NW_012107142v1       I 12 C 0
s saiBol1.JH378364                67749 2 +    187130 gt
i saiBol1.JH378364             I 12 C 0
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1         185712 0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=175268.000000
s hg38.chr6_GL000254v2_alt      1040083 73 +   4827813 aatccccacgtgctaggggaaagacatggtgggaagtgattagatcatggggatggttccctcatgctgttct
s panTro5.chr6                 30005720 73 + 175400573 aatccccacgtgctaggggaaagacatggtgggaagtgattagatcatggggatggttccctcatgctgttct
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30236389 73 + 173848474 aatccccacgtgctaggggaaagacatggtgggaagtgattagatcatggggatggttccctcatgctgttct
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6038781 73 +   6154872 aatccccacgtgctaggggaaagacatggtgggaagtgattagatcatggggatgtttccctcatgctgttct
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74718128 73 + 122973662 aatccctacctattgggggagggacctcatgggaggtgattggatcatggggacagcacccccatgctgttct
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random   100930 73 +    231697 actccctacctgttgggggagggaccacacgggaggtgactggatcatggggacagttcccccatgctgttct
i macFas5.chr4_KE145577_random C 0 C 0
s chlSab2.chr17                29301055 73 -  71996105 actccgtacctactgggggagggacctcatgggaggtgattggatcatggggacagttcccccatgctattct
i chlSab2.chr17                N 0 C 0
s manLeu1.NW_012107142v1          85194 73 -    735854 aatccctgtgtactgggggagggacctcatgggaggtcattggatcatggggacggtgcccccatgctgctct
i manLeu1.NW_012107142v1       C 0 C 0
s saiBol1.JH378364                67751 72 +    187130 aatccccccatattgagggtgggaccacgtgggaggtgattggatgatggggat-gttctcacatgctgttct
i saiBol1.JH378364             C 0 I 1861
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1         185712  0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=82060.000000
s hg38.chr6_GL000254v2_alt      1040156 45 +   4827813 catgatagtgagtgagttct-atgagatctgatggttttgcaagag
s panTro5.chr6                 30005793 43 + 175400573 catgatagtgagtgagttct-atgagatctgatggttttacaag--
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30236462 43 + 173848474 catgatagtgagtgagttct-atgagatctgatggttttacaag--
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6038854 45 +   6154872 catgatagtgagtgagttct-atgagatctgatggttttacaagag
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74718201 46 + 122973662 ggtgatactgagggaattctcatgagatctgatggttttataaggg
i nomLeu3.chr1a                C 0 I 2
s macFas5.chr4_KE145577_random   101003 46 +    231697 catgatactgagggaattctcatgagatgtgatggttctataagtg
i macFas5.chr4_KE145577_random C 0 I 2
s chlSab2.chr17                29301128 46 -  71996105 catgatactgagggaattctcatgagatgtgatggttctataaggg
i chlSab2.chr17                C 0 I 2
s manLeu1.NW_012107142v1          85267 46 -    735854 catgatactgagggaatcctcctgagatctgatggttttataaggg
i manLeu1.NW_012107142v1       C 0 I 15
e saiBol1.JH378364                67823 1861 +    187130 I
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1         185712  0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=15440.000000
s hg38.chr6_GL000254v2_alt      1040201 27 +   4827813 tcttccctgccacccccgcccctgaca
s panTro5.chr6                 30005836 27 + 175400573 tcttccctgccacccccgccccccaca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30236505 27 + 173848474 tcttccctgccacccccgccccccaca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6038899 27 +   6154872 tcttccctgccacccccgctccccaca
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74718249 13 + 122973662 ttttccctgcttc--------------
i nomLeu3.chr1a                I 2 C 0
s macFas5.chr4_KE145577_random   101051 13 +    231697 atttccctgcttc--------------
i macFas5.chr4_KE145577_random I 2 C 0
s chlSab2.chr17                29301176 13 -  71996105 atttccctgcttc--------------
i chlSab2.chr17                I 2 C 0
e saiBol1.JH378364                67823 1861 +    187130 I
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e manLeu1.NW_012107142v1          85313 15 -    735854 I
e cerAty1.NW_012002535v1         185712  0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=52912.000000
s hg38.chr6_GL000254v2_alt      1040228 26 +   4827813 accttgcatttctctctccca----ccacc
s panTro5.chr6                 30005863 26 + 175400573 accttgcatttctctctccca----ccacc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30236532 26 + 173848474 accttgcatttctctctccca----ccacc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6038926 26 +   6154872 accttgcatttctctctccca----ccacc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74718262 26 + 122973662 attctgcatttctctctcctg----ccacc
i nomLeu3.chr1a                C 0 I 871
s macFas5.chr4_KE145577_random   101064 26 +    231697 attctgcatttctctctcctg----ccacc
i macFas5.chr4_KE145577_random C 0 C 0
s chlSab2.chr17                29301189 30 -  71996105 attctgcatttctctctcctaccacccacc
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          85328 26 -    735854 attctgcatttctgtctcatg----ccacc
i manLeu1.NW_012107142v1       I 15 C 0
e saiBol1.JH378364                67823 1861 +    187130 I
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1         185712  0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=257226.000000
s hg38.chr6_GL000254v2_alt      1040254 120 +   4827813 atgtgaagaatgacatgcttccttccccttctgccatgattgtaaatttcctgaggccgcctcttcagtcatgcagaactgtgagtcaattaaacctctttcctttataaattacccagt
s panTro5.chr6                 30005889 120 + 175400573 atgtgaagaatgacatgcttccttccccttctgccatgattgtaaatttcctgaggccgcctcctcagtcatgcagaactgtgagtcaattaaacctctttcctttataaattacccagt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30236558 120 + 173848474 atgtgaagaatgacatgcttccttccccttctgccatgattgtaaatttcctgaggccgcctcctcagtcatgcagaactgtgagtcaattaaacctctttcctttacaaattacccagt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6038952 120 +   6154872 atgtgaagaatgacatgcttccttccccttctgccatgattgtaaatttcctgaggccgcctcctcagtcatgcagaactgtgagtcaattaaacctctttcctttataaattacccagt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74719159 120 + 122973662 atgtgaagaaggatgtgtttgcttccacttctgccgtgactgtaagtttcttggggcagcctcctcagccacacagaactgtgagtcaattaaacctctttcctttataaattacccagt
i nomLeu3.chr1a                I 871 C 0
s macFas5.chr4_KE145577_random   101090 120 +    231697 atgtgaagaaggacatgtttgcttccaattctgccatgactctaagtttcctggggcaggctcctcagcaatgcagaactgtgagtcagttaaatctctttcctttataaatcacccaat
i macFas5.chr4_KE145577_random C 0 C 0
s chlSab2.chr17                29301219 116 -  71996105 atgtgaagaaggaggtgtttgcttccgcttctgccatgactctaagtttcctggggcaggctcctcagcaatgcagaactgtgagtcagttaaaa----ctcctttataaatcacccaat
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          85354 120 -    735854 gtgtgaagaaggacatgtttgcttccacttctgccatgactctaagtttcctggggcaggctcctcagcaatgcagaactgtgagtcagttaaacatctttcctttataaattacccaat
i manLeu1.NW_012107142v1       C 0 C 0
e saiBol1.JH378364                67823 1861 +    187130 I
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1         185712   0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=1623189.000000
s hg38.chr6_GL000254v2_alt      1040374 618 +   4827813 ctcaggtatttctttatagcagtgtgagaacagacaaatacaacttctaactg--------atagagtagtgctgatataacagtttttgactctgggtgtagaacataaaactcactgcag-------cttctctc--tctctgtctctgggatcatgagctctgggggaagccaactgctgtgccataagcagccctgcaggaaggtccatgtggctaaaaactgaggcctcctgggaccggacaacaaggaa------------------ccatgtgagtgagccatgtttcttgtaaatcccaagccctagtgaagctctcagatgatgcagccctgg-------actggactgtaaccttgtgagaggctctgagccagaagcactcagggaaaccttgctcctggattcctgaccattggaaactgcggtagatgatg----tttgttgttttgcgctgctaagttttatgtaatttgttatgcaatagtaaataactaatacaTTTTCATAAGAGAGGATGATTTATTGCACTTCAATTTTCATTTGCTCTAAATTTATGATCATGATTATTACTAtttttgagacagcatcttgctctgtcacagaggctagagtgcagtggcatgttcaccattcactgctgtgttgacttcctg
s panTro5.chr6                 30006009 618 + 175400573 ctcaggtatttctttatagcagtgtgagaacagacaaatacaacttctaactg--------atagagtagtgctgacataacagtttttgactctgggtgtagaacataaaactcactgcag-------cttctctc--tctctgtctctgggatcatgagctctgggggaagccaactgctgtgccataagcagcactgcaggaaggtccatgtggctaaaaactgaggcctcctgggaccggacaacaaggaa------------------ccatgtgagtgagccatgtttcatgtaaattccaagccctagtgaagctctcagacgatgcagtcctgg-------actggactgtaaccctgtgagaggctctgagccagaagcactcagggaaaccttgctcctggattcctgaccattggaaactgcggtagatgatg----tttgttgttttgtgctgctaagttttatgtaatttgttatgcaatagtaaacaactaatacaTTTTCACAAGagaggatgatttattgcacttcaattttcatttgctctaaatttatgatcatgattattactatttttgagacagcatcttgctctgtcacagaggctagagtgcagtggcatgttcaccattcactgctgtgttgacttcctg
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30236678 618 + 173848474 ctcaggtatttctttatagcagtgtgagaacagacaaatacaacttctaactg--------atagagtagtgctgacataacagtttttgactctgggtgtagaacataaaactcactgcag-------cttctctc--tctctgtctctgggatcatgagctctgggggaagccaactgctgtgccataagcagccctgcaggaaggtccatgtggctaaaaactgaggcctcctgggaccggaaaacaaggaa------------------ccatgtgagtgagccatgtttcatgtaaattccaagccctagtgaagctctcagacgatgcagtcctgg-------actggactgtaaccctgtgagaggctctgagccagaagcactcagggaaaccttgctcctggattcctgaccattggaaactgcggtagatgatg----tttgttgttttgcgctgctaagttttatgtaatttgttatgcaatagtaaataactaatacaTTTTCACAAGagaggatgatttattgcacttcaattttcatttgctctaaatttatgatcatgattattactatttttgagacagcatcttgctctgtcacagaggctagagtgcagtggcatgttcaccattcactgctgtgttgacttcctg
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6039072 618 +   6154872 ctcaggtatttctttatagcagtgtgagaacagacaaatacaacttctaactg--------atagagtagtgctgatataacagtttttgactctgggtgtagaacataaaactcactgcag-------cttctctc--tctctgtctctgggatcatgagctctgggggaagccaactgctgtgccataagcagccctgcaggaaggtccatgtggctaaaaactgaggcctcctgggaccggacaacaaggaa------------------ccatgtgagtgagccatgtttcatgtaaatcccaagccctagtgaagctctcagacgatgcagccctgg-------actggactgtaaccttgtgagaggctctgagccagaagcactcagggaaaccttgctcctggattcctgaccattggaaactgcggtagatgatg----tttgttgttttgcgctgctaagttttatgtaatttgttatgcaatagtaaataactaatacaTTTTCATAAGagaggatgatttattgcacttcaattttcatttgctctaaatttatgatcatgattattactatttttgagacagcatcttgctctgtcacagaggctagagtgcagtggcatgttcaccattcaccgctgtgttgacttcctg
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74719279 657 + 122973662 ctcaggtatttctttatagcagtgtgagaatggactaaaacaACTTCTAActtctaacaacatagaataatgctgacataacagtttgtgactctgggtgtagaacataaaactcactgcggcttccaccttctctc--tctctgtctctgggatcatgagctctggggaaagccagctgctgtgccacaagcagccctgcaggaaggtccatgtggctaagaactgaagccttctgggaacagacaacaaggaactaggccttttccaacagccatgtgactgatccatgtttcttgtgaatcctcagccccagtgtagccctcagatgatgcagcccttggctgacaactggactgcaacctcgtgagaggccctgaggaggaagtattcagggaaacctt--tcctgggttcctaaccattggaaactgtgggagatgatgaatatttgttgttttga---gcaaagttttacataatttgttatgcaatagtaaataactaatacaTTTTCACAAGAGAGGATGTATTATTACACGTTAAATTGCATTTGCTCTAAATGTATCATCATCATTATTATTAtttttgagacagggtctcactctatcacccaggctggagtgcagtagcatgatcaccatgcactgcagtgtcaacctgctg
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random   101210 641 +    231697 ctcaggtatttctttatagcagtgtgagaatggactaatacaActtctaactt--------atagaataatgctgacataacagtttgtgactttgtgtgtaaaacataaaactcactgcagcttccaccttctctctctctctatccgcgggaacatgagctctgggggaagccagctgctgtgccaaaagcagccctgcaggaaagtccacgtgactgagaactgaggccttctgggactagataacaaggaactaggccttttccaacagccatgtgactgatctgtctttcttgtgaatcctcaaccccagtgaagccctcagatgatgcagccct----tgacaactggactgcaatcttgtgagaggtcctgagccataagcactctgggaaacttc--tcctggattcctaagcattggaaactgtgggagatgatgaatatttattgttttga---gcttggtgttatataatttgttatgcaaccgtaaatacacaatacaTTTTCACAAGACAGGATGTATTATTACACGTTAAATTGCATTTGCTCCAAATGTATCATCATCATCATTA------ttgagacaaggtcacactctgtaacccagtctggaatgtggtggcatgatcaccatgcactgcagtgtcaacctcctg
i macFas5.chr4_KE145577_random C 0 C 0
s chlSab2.chr17                29301335 644 -  71996105 ctcaggtatttctttatagcaatgtgagaatggactaaagtaacttctaacgt--------acagaataatgctgacataacagtttgtgactttgggtatagaacacaaaactcactgcagcttccaccttctctc--tctctgtctctgggatcatgagctctgggggaatccagctgctgtgccataagcagccctgcaggaaggtccatgtgactgagaac-ggggccttctgggactagataacaagaaactaggccttttccaacagccatgtgactgatccatctttcttgtgaatcctgagccccagtgaagccctcagatgatgcagcccttgactgacaactggactgcaaccttgtgagaggtcctgagccagaagcactcagggaaacttc--tcctggattcttaaccattggaaaccgtgggagatgatgaatatttgtgtttttga---gctaagtgttacataattcattatgcaatcataaat----aaTACATTTTCACAACAGAGGATGTTTTATTACATGTTAAATTGCATTTGCTCTAAGTGTATCATCATCATCATTATTAtttttgagacaaggtctcactctgtcagccaggctggagtgcggtggcatgatcaccatgcactgtagtgtcgacctcctg
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012107142v1          85474 645 -    735854 ctcaggtatttctttatagcagtgtgagaatggactaatacaActtctaactt--------acagaataatgctgacataacagtttgtgactctgggtgtagaacataaaacttactgtggcttccaccttctctc---atctgtctctgggatcatgagctctgggggaagccagctgctgtgccataagcagccctgcaggaaggtccatgtgactgagaactgaggtcttctgggaacagacaacagggaactaggcctttttcaacagccatgtgactgatccatgtttctggtgaatcctcagccccagcgaagccctcaagtggtgcagcccttggctgacaactggactgcaaccttgtgagaggccctgagccagaagcactcaggaaaatctt--tcctggatttctaaccattggaaactgtgggacatgaggaatatctgctgttttga---gctaagttttacataatttgttatgcaattgtaaataatgaatacaTTTTCACAAAAGAGGATGTATTATTACATGTTAAATTGCATTTGCTCTAAAT---TTATCATCATCATTATTAtttttgagacagggtctcactctgtcacccaggctggagtgcagtggcatgatcaccatgcactgcagtgtcgacctcctg
i manLeu1.NW_012107142v1       C 0 N 0
s saiBol1.JH378364                69684 645 +    187130 ctcaggtatttctttatagcagtgtgagaacaagctaatacaActtctaacag--------atagtgtaatgatgacataagagtttctgactccgggtgtagaatataaaactcgctgtggcttctactttctctc--tctctgtctctgggatcatgagctctgggggaagccagctgctgtgctataagcagccctgcaggaaggtccatgtggctaagaactgaggccttctgggaccagacaacaagaaactagaccttttccaacagccatgtgactgagccatgtttcatgtgaatcctcagccccagtgaaacactcagatgatgcagcccttggctgacgactggactacaaccttgtgagaggaactgagccagaagcactcagggaaacttc--tcctggattccttgccattggaaactgtggaagatgatgaatatttgttgttttgagctgctaagttttacatatattgttatgcaatagtaaataacta----aCTTTGACAAGAATGTATGTAATATTACACATTAATTTGCATTTGCTCTAAAT---TTATCATCATCCTTATTAtttttgagacagggtctcactctgtcaccgaggctggagtgcagtggcatgatcaccatgcactgcagtgtcgacctcctg
i saiBol1.JH378364             I 1861 C 0
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1         185712   0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=459006.000000
s hg38.chr6_GL000254v2_alt      1040992 235 +   4827813 tgctcaa-atatcctctgacctcagcctcctgagtagctggctgggactacaggcatgaaccaccatgcctggataatactctaa--tgtttttgtagagatggaggtttcaccatgttgcccaggctgatctcaaactcttggagtcaatggatctgccttcctctgcccgccacagtgctaggattgtaggtgccagccaccacacctggcATGAATtaattataagctattaaac
s panTro5.chr6                 30006627 235 + 175400573 tgctcaa-atatcctctgacctcagcctcctgagtagctggctgggaccacaggcatgaaccaccatgcctggataatactctaa--tgtttttgtagagatggaggtttcaccatgttgcccaggctgatctcaaactcttggagtcaatggatctgccttcctctgcccgccacagtgctaggattgtaggtgccagccaccacatctggcatgaattaattataagctattaaac
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30237296 235 + 173848474 tgctcaa-atatcctctgacctcagcctcctgagtagctggccgggaccacaggcatgaaccaccatgcctggataatactctaa--tgtttttgtagagatggaggtttcaccatgttgcccaggctgatctcaaactcttggagtcaatggatctgccttcctctgcccgccacagtgctaggattgtaggtgccagccaccacacctggcatgaattaattataagctattaaac
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6039690 235 +   6154872 tgctcaa-atatcctctgacctcagcctcctgagtagctggctgggactacaggcatgaaccaccatgcctggataatactctaa--tgttttcgtagagatggaggtttcaccatgttgcccaggctgatctcaaactgttggagtcaatggatctgccttcctctgcccgccacagtgctaggattgtaggtgccagccaccacacctggcatgaattaattataagctattaaac
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74719936 231 + 122973662 ggctcaagggaccctctgatctcagcatcctgagtagct----gggactacaggcatgaaccaccatgcctggctaattttctaa--t-tttttgtagagatgggggttttgccatgttgcccaggctgatcttgaacttctggagtcaacaaatctgccttcctcttccttccacagtgctaggatggcaggtgtgagccaccacacctggccTAAATtaattataagatattaaac
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random   101851 223 +    231697 gggtcaagggaccctctgatctcagcctcctgagtagct----gggactacaggcatgaaccaccatgcctcactaattttctaa--tttctttgtagagatgggggtt--------ttgcccaggctgatcttgaacttctggagtcaacaaatctgcc-tcccctgccttccacagtgctaggatagcaggcacgagccaccacatctggccTaaagtaattataagacattaaac
i macFas5.chr4_KE145577_random C 0 C 0
s chlSab2.chr17                29301979 225 -  71996105 ggctcaagggaccctctgatctcagcctcctgagtagct----gggactacaggcatgaaccgccaagcctgactaattttctaat-tttttttgtagagatgggggtt--------ttgcccaggctgatcttgaacttctggagtcaacaaatctgccttcctctgccttccacagtgctaggatagcaggcgtcagccaccacatatggccTaaagtaattataagacattaaac
i chlSab2.chr17                C 0 C 0
s saiBol1.JH378364                70329 234 +    187130 ggctaaagggatcctgtgacctcagcctcctgagtatct----ggggctagaggcataaaacaccatgcctggctaattttctaatatttttttgtaaagatgggggtttgaccatgtttcccaggctgatcttgaacttctggagtcaatcaatttgccttcctctgctttcaacagtgctagtattgcaagcgtgagccaccacaccaggccTAAATTAACTATAAGATATTAAGC
i saiBol1.JH378364             C 0 T 48680
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1         185712   0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=371725.000000
s hg38.chr6_GL000254v2_alt      1041227 216 +   4827813 ctgtcacttg-attttaagaggtaaggtgaatctccatggctgaagaggatgtattttattatcattcacaatgatcgctttacttgaacttcaatttccaactgtgtcacaattaaacacaaaaggaaaaTCCAACCCTtgctaggctgattctataatagccccaacaaccagctcctggtcatccaccttcccccaattattcaaccaactcta
s panTro5.chr6                 30006862 216 + 175400573 ctgtcacttg-attttaagaggtaaggtgaatctccatggctgaagaggatgtattttattatcattcacaatgatcactttacttgaacttcaatttccaactgtgtctcaattaaacacaaaaggaaaaTCCAACCCTtgctaggctgattctataatagccccaacaaccagctcctggtcatccaccttcccccagttattcaaccaactcta
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30237531 216 + 173848474 ctgtcacttg-attttaagaggtaaggtgaatctccatggctgaagaggatgtattttattatcattcacaatgatcactttacttgaacttcaatttccaactgtgtctcaattaaacacaaaaggaaaaTCCAACCCTtgctaggctgattctataatagccccaacaaccagctcctggtcatccaccttcccccagttattcaaccaactcta
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6039925 216 +   6154872 ctgtcacttg-attttaagaggtaaggtgaatctccatggctgaagaggatgtattttattatcattcacaatgatcactttacttgaacttcaattttcaactgtgtctcaattaaacacaaaaggaaaaTCCAACCCTtgctaggctgattctataatagccccaacaaccagctcctggtcatccaccttcccccaattattcaaccaactcta
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74720167 216 + 122973662 ttgtaactta-gttttaaaaggtaaggagaatttccatggctgaaaaggatgtatttgatgaccattcacaatgatcactttacttgaacttcaatttccaactgtgtcctaattaaacacaaaTTGAAGATTCTACCCTtgctaggctgattctatgatggcctcaacaaccagctcctggtcattcaccttcctccagttactcaatcaactcta
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random   102074 217 +    231697 atgtaacttgtgttttaaaaggtaaggagaatttccatggccgaagaggatgtagtttaatatcgtttacaatgatcactttacttgaacttcaatttccaactgtgtcgcaattaaacacaaaaggaagaTCCAACCCTtgctaggctgattctatgatggccccaacagccagctcgtggtcattcaccttctcccagtgattcaaccaactcta
i macFas5.chr4_KE145577_random C 0 C 0
s chlSab2.chr17                29302204 216 -  71996105 acgtgactta-gttttaaaaggtaaggagaatttccatggccgaagaggatgtagtttaatatcgttcgcaatgatcactttacctgaacttcaatttccaactgtgtcccaattaaacacaaaaggaagaTCCAAACCTtgctaggctgattctatgatggccccaacagccagctcctggtcattcaccttcccccagtgattcaaccaactcta
i chlSab2.chr17                C 0 N 0
e saiBol1.JH378364                70563 48680 +    187130 T
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1         185712   0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=258710.000000
s hg38.chr6_GL000254v2_alt      1041443 206 +   4827813 ctgtaggtgctgctgtgaagggatttagcagatataatcaaggtcctcaatcagttgacttgaggctgggtttagcctgcttggacactcctaatcaggtgagcccatgaaaggactgggttcttcctgagcatagagattcacagtgtgagagggattcagtgtgaggggtttcctccactgtgggctttgaaattgaaggggct
s panTro5.chr6                 30007078 206 + 175400573 ctgtaggtgctgctgtgaagggatttagcagatataatcaaggtcctcaatcagttgacttgaggctgggtttagcctgtttggacagtcctaatcaggtgagcccatgaaaggactgggttcttcctgagcatagagattcacagtgtgagagggattcagtgtgaggggtttcctccactgtgggctttgaaattgaaggggct
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30237747 206 + 173848474 ctgtaggtgctgctgtgaagggatttagcagatataatcaaggtcctcaatcagttgacttgaggctgggtttagcctatttggacagtcctaatcaggtgagcccatgaaaggactgggttcttcctgagcatagagattcacagtgtgagagggattcaatgtgaggggtttcctccactgtgggctttgaaattgaaggggct
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6040141 206 +   6154872 ctgtaggtgctgctgtgaagggatttagcagatataatcaaggtcctcaatcagttgacttgaggctgggtttagcctgcttggacagtcctaatcaggtgagcccatgaaaggactgggttcttcctgagcatagagattcacagtgtgagagggattcagtgtgaggggtttcctccactgtgggctttgaaattgaaggggct
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74720383 206 + 122973662 atataggtgctgttgtgaaaggatttagcagatataattaagggcctcaattagttgactttaggctaggtttatcctgcttggactgtcctaatcaggtgagcccttgaaaggacagggttcttcctgaacatagagattcacagtgtgagagggactcagtatgaggggtttcctccaccatggggtttgaaaatgaaggggct
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random   102291 206 +    231697 atgtaggtgccgctgtgaagggatttagcagatacaattaaggggctcaattagttgactttaggctgggtttcttctgcttggactgttctaatcaggtgagcccttgaaaggactgggttcttcctgagcatagagaaatgcagtgtgagaggcattcagcatgaggggtttcctccaccgtgggctttgaaaatgaaggggct
i macFas5.chr4_KE145577_random C 0 T 4422
e saiBol1.JH378364                70563 48680 +    187130 T
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1         185712   0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=1000.000000
s hg38.chr6_GL000254v2_alt      1041649 1 +   4827813 g
s panTro5.chr6                 30007284 1 + 175400573 g
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30237953 1 + 173848474 g
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6040347 1 +   6154872 g
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74720589 1 + 122973662 g
i nomLeu3.chr1a                C 0 T 34712
e saiBol1.JH378364                70563 48680 +    187130 T
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1         185712 0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random   102497 4422 +    231697 T
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=205323.000000
s hg38.chr6_GL000254v2_alt      1041650 371 +   4827813 actagaaaagaatgctgtttggctccaggcattgagcacagccctccctcctctctaccttgacagctagcagggaacaggaaactcagtcttaacgactgtcagaaactgaattctgccgcctctatatatgcttgaaggaggattcaaaatgaaaa---cacagctttgggaagccctgaatagagaccccgtctacatcatgcctggatttctgcctaaagaactgtaaacagatcagtggatgttgtttgggcaggtgtggtagcacacacctgcaatcctaacatttgaggggcttacacaggaggatcacttacactcaggaatttgagaccagcctgggtaatgcaatgagaccctcatctctacaa
s panTro5.chr6                 30007285 374 + 175400573 actaggaaagaatgctgtttggccccaggcattgagcacagccctccctcctctctaccttgacagctagcagggaacaggaaactcagtcttaacgactgccagaaactgaattctgccgcctctatatacgcttgaaggaggattcaaaatgaaaaaaacacagctttgggaagccctgaatagagaccccgtctacatcatgcctggatttctgcctaaagaactgtaaacagatcagtgggtgttgtttgggcaggtgtggtagcacacacctgcaatcctaacgtttgaggggctgacacaggaggatcacttacacccaggaatttgagaccagcctgggtaatgcaatgagaccctcatctctacaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30237954 374 + 173848474 actaggaaagaatgctgtttggccccaggcattgagcacagccctccctcctctctaccttgacagctagcagggaacaggaaactcagtcttaacgactgccagaaactgaattctgccgcctctatatacgcttgaaggaggattcaaaatgaaaaaaacacagctttgggaagccctgaatagagaccccgtctacatcatgcctggatttctgcctaaagaactgtaaacagatcagtgggtgttgtttgggcaggtgtggtagcacacacctgcaatcctaacgtttgaggggctgacacaggaggatcacttacacccaggaatttgagaccagcctgggtaatgcaatgagaccctcatctctacaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6040348 371 +   6154872 actagaaaagaatgctgtttggctccaggcattcagcacagccctccctcctctctaccttgacagctagcagggaacaggaaactcagtcttaacgactgccagaaactgaattctgccgcctctatatatgcttgaaggaggattcaaaatgaaaa---cacagctttgggaagccctgaatagagaccccgtctacatcatgcctggatttctgcctaaagaactgtaaacagatcagtggatgttgtttgggcaggtgtggtagcacacacctgcaatcctaatatttgaggggcttacacaggaggatcacttacacccaggaatttgagaccagcctgggtaatgcaatgagaccctcatctctacaa
i gorGor5.CYUI01015250v1       C 0 C 0
e saiBol1.JH378364                70563 48680 +    187130 T
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1         185712   0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random   102497 4422 +    231697 T
e rheMac8.chr4                 30268542 6233 + 172585720 I
e nomLeu3.chr1a                74720590 34712 + 122973662 T

a score=210383.000000
s hg38.chr6_GL000254v2_alt      1042021 265 +   4827813 ttttttttt-aa--ttagctgggcgtggtggcatttgcctgtagttctagttactctgaagactgagccaggaggatcctttgagcccaggatttcaaggctgcagtgagccatgactgtgtgactgcacttcaaaatggatgagagaaagagaccatttctctaaaaataaatgaattaattaaataaatgggtattgtttaaagccaatatttgtgataatttgttatgcagtc--ataaaaTTCGTACA--GTCTCAACAGACAAAtgg
s panTro5.chr6                 30007659 268 + 175400573 ttttttttttaa--ttagctgggcgtggtggcatttgcctgtagttctagttactctgaagactgagccaggaggatcctttgagcccaggatttcaaggctgcagtgagccatgactgtgtgactgcacttcaaaatggatgagagaaagagaccatttctctaaaaataaatgaattaattaaataaatgggtattgtttaaagccaatatttgtgataatttgttatgcagtc--ataaaattcgtacaCAGTCTCAACAGACAAAtgg
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30238328 267 + 173848474 ttttttttt-aa--ttagctgggcgtggtggcatttgcctatagttctagttactctgaagactgagccaggaggatcctttgagcccaggatttcaaggctgcagtgagccatgactgtgtgactgcacttcaaaatggatgagagaaagagaccatttctctaaaaataaatgaattaattaaataaatgggtattgtttaaagccaatatttgtgataatttgttatgcagtc--ataaaattcatacaCAGTCTCAACAGACAAAtgg
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6040719 268 +   6154872 ttttttttttaa--ttagctgggcatggtggcatttgcctgtagttctagttactctgaagactgagccaggaggatcctttgagcccaggatttcaaggctgcagtgagccatgactgtgtgactgcacttcaaaatggatgagagaaagagaccatttctctaaaaataaatgaattaattaaataaatgggtattgtttaaagccaatatttgtgataatttgttatgcagtc--ataaaaTTCGTACACAGTCTCAACAGACAAATGG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74685878 271 + 122973662 ttttttttt-aaatttacctgagcatggtggtacttgcctgtagtcctagctactccagacactgaggcagggggacctctagaggccaagagtttgaggttgcagggaaccatgatcatgcaactgcacttcaccctggataagagagggagaccatgtctctacaaataaataaataaatataataaatgggtgttgtttaaagcccatgtttgtggtaatttgttatgcagtcatataaaagtcatacaCAGACTCAACAGACACATGG
i nomLeu3.chr1a                T 34712 C 0
e saiBol1.JH378364                70563 48680 +    187130 T
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1         185712   0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random   102497 4422 +    231697 T
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=105946.000000
s hg38.chr6_GL000254v2_alt      1042286 111 +   4827813 aatgaatttatgaattgatatgcacactagttacataaaataaaaactttctcaatcttttccagtattgtttattttataattttctgtgatgaaattaaattttaataC
s panTro5.chr6                 30007927 111 + 175400573 aatgaatttatgaattgatatgcacactagttacataaaataaaaactttctcaaccttttccagtattgtttattttataattttctgtgatgaaattaaattttaatac
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30238595 111 + 173848474 aatgaatttatgaattgatatgcacactagttacataaaataaaaactttctcaaccttttccagtattgtttattttataattttctgtgatgaaattaaattttaatac
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6040987 107 +   6154872 AATGAATTTATGAATTGATATGCACACTAGTTACATAAAATAAAAACTTTCTCAATCTTTTCCAGTA----TTATTTTATAATTTTATGTGATGAAATTAAATTTTAATAC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74686149 107 + 122973662 AATGAATTTATAAATTGATAAGCACACTACATGTGTAAAATAAAATATTTC----CTTTTTCCAGTATTTTTCATTTTATAATATTCCATGATGCGATTAAATTTTTATAC
i nomLeu3.chr1a                C 0 I 28983
s saiBol1.JH378364                21883 102 +    187130 AATAAATTGATGAATTGATATGCACACTAGTTACATAAAATAAAATGTCTT---AACTTGGTTAGTGTTTTACATTTTGTAATTTTCTGTGGTCC------ATTTTAATAC
i saiBol1.JH378364             T 48680 C 0
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1         185712   0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random   102497 4422 +    231697 T
e rheMac8.chr4                 30268542 6233 + 172585720 I

a score=32879.000000
s hg38.chr6_GL000254v2_alt      1042397 40 +   4827813 ACTCATATTTCATTTATTCAGTCAACAAAAATTAATTTGG
s panTro5.chr6                 30008038 40 + 175400573 actcatatttcatTGATTCAGTCAACAAAAATTAATTTGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30238706 40 + 173848474 actcatatttcatTGATTCAGTCAACAAAAATTAATTTGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6041094 40 +   6154872 ACTCATATTTCATTTATTCAGTCAACAAAAATTAATTCGG
i gorGor5.CYUI01015250v1       C 0 C 0
s saiBol1.JH378364                21985 40 +    187130 ACTCATGTTTCAATCACTCAGTCAACAAAAATTAATTTAG
i saiBol1.JH378364             C 0 T 5183
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1         185712  0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random   102497 4422 +    231697 T
e rheMac8.chr4                 30268542 6233 + 172585720 I
e nomLeu3.chr1a                74686256 28983 + 122973662 I

a score=2646002.000000
s hg38.chr6_GL000254v2_alt      1042437 4866 +   4827813 [encoded data, 4894 characters]
s panTro5.chr6                 30008078 4866 + 175400573 [encoded data, 4894 characters]
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30238746 4881 + 173848474 [encoded data, 4894 characters]
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6041134 4864 +   6154872 [encoded data, 4894 characters]
i gorGor5.CYUI01015250v1       C 0 C 0
e saiBol1.JH378364                22025 5183 +    187130 T
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382  889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1         185712    0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random   102497 4422 +    231697 T
e rheMac8.chr4                 30268542 6233 + 172585720 I
e nomLeu3.chr1a                74686256 28983 + 122973662 I

a score=298431.000000
s hg38.chr6_GL000254v2_alt      1047303 336 +   4827813 ttaataaatggtgctgggaaaactggctagccacatgtagaaagctgaaactggatcccttccttacaacttatacagaaattaattccagatggattaaagacttcaatgttagacctaaaaccataaaaccc-aaaagaaaacctaggcaataccacttaggaaatcagcatgggcaaggatttcgtgactaaaacaccaaaagcaatggcaacaaaagccaaattagacaaatgggatctaattaaactaaaaagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgggagaaaatttttgcagtctaccca
s panTro5.chr6                 30012944 336 + 175400573 ttaataaatggtgctgggaaaactggctagccacatgtagaaagctgaaactggatcccttccttacaacttatacagaaattaattccagatggattaaagacttcaatgttagacctaaaaccataaaaccc-aaaagaaaacctaggcaataccacttaggaaataggcatgggcaaggatttcgtgactaaaacaccaaaagcaatggcaacaaaagccaaattagacaaatgggatctaattaaactaaaaagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgggagaaaatttttgcagtctaccca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30243627 336 + 173848474 ttaataaatggtgctgggaaaactggctagccacatgtagaaagctgaaactggatcccttccttacaacttatacagaaattaattccagatggattaaagacttcaatgttagacctaaaaccataaaaccc-aaaagaaaacctaggcaataccacttaggaaataggcatgggcaaggatttcgtgactaaaacaccaaaagcaatggcaacaaaagccaaattagacaaatgggatctaattaaactaaaaagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgggagaaaatttttgcagtctaccca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6045998 336 +   6154872 ttaataaatggtgctgggaaaactggctatccctatgtagaaagctgaaactggatcccttccttacaacttatacagaaattaattccagatggattaaagacttcaatgttagacctaaaaccataaaaccc-aaaagaaaacctaggcaataccacttaggaaataggcatgggcaaggatttcgtgactaaaacaccaaaagcaatggcaacaaaagccaaattagacaaatgggatctaattaaactaaaaagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacagaatgggagaaaatttttgcagtctaccca
i gorGor5.CYUI01015250v1       C 0 C 0
s chlSab2.chr17                29194563 337 -  71996105 ttaataaatggtgctgggaaaactggctagccatatatagaaagctgaaactggatcccttccttacaccttatacgaaaattaattcaagatgtattaaagacttaaatgttagacctaaaaccataaaaccctaaaagaaaacctaggcagtaccattcaggacataggcatgggcaaggccttcatgactaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcacagtaaacaggcaacctacagaatgggagaaaatttttgcaatctaccca
i chlSab2.chr17                N 0 I 61
e saiBol1.JH378364                22025 5183 +    187130 T
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e cerAty1.NW_012002535v1         185712   0 -    863181 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random   102497 4422 +    231697 T
e rheMac8.chr4                 30268542 6233 + 172585720 I
e nomLeu3.chr1a                74686256 28983 + 122973662 I

a score=287439.000000
s hg38.chr6_GL000254v2_alt      1047639 225 +   4827813 tcaaacaaccccataaaaagtgggcaaaggatatgaacaggcacttctcaaaagaagacatttatgcagccaacagacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcgatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaacaggaaca-c
s panTro5.chr6                 30013280 225 + 175400573 tcaaacaaccccataaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaacagacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccataatgagataccatctcacaccagttagaatggcgatcattaaaaagtcaggaaagaacaggtgctggagaggatgtggagaaataggaaca-c
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30243963 225 + 173848474 tcaaacaaccccataaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaacagacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccataatgagataccatctcacaccagttagaatggcgatcattaaaaagtcaggaaagaacaggtgctggagaggatgtggagaaataggaaca-c
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6046334 225 +   6154872 tcaaacaaccccataaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaacagacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacagtgagataccatctcacaccagttagaatggcgatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaacaggaaca-c
i gorGor5.CYUI01015250v1       C 0 C 0
s cerAty1.NW_012002535v1          12190 223 -    863181 tcaaacaaccccataaaaactgggcaaagtatatgaacagacacttctc-aaagaagacatttatgcagccaacagacacatgaaaaaacgctcatcatcactggtcatcagagaaatgcaaatcaaaaccacaatgagctaccatctcacacctgttagaatggtgatcattaaaaaatcaggaaacaacagatgctggagaggatgtggagaaataggaagg--
i cerAty1.NW_012002535v1       n 0 C 0
s chlSab2.chr17                29194961 224 -  71996105 tcaaacaaccccataaaaactgggcaaagtatatgaacagacacttctc-aaagaagacatttatgcagccaacagacacacgaaaaaacactcatcatcactggtcatcagagaaatgcaaatcaaaaccacaatgagctaccatctcacacctgttagaatggtgatcattaaaaaatcaggaaacaacagatgctggagaggatgtggagaaataggaaagg-
i chlSab2.chr17                I 61 C 0
e saiBol1.JH378364                22025 5183 +    187130 T
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random   102497 4422 +    231697 T
e rheMac8.chr4                 30268542 6233 + 172585720 I
e nomLeu3.chr1a                74686256 28983 + 122973662 I

a score=139346.000000
s hg38.chr6_GL000254v2_alt      1047864 79 +   4827813 ttttacactgttggtgggactgtaaactagttcaaccattgtggaagacagtgtggcaattcctgaaggatctagaact
s panTro5.chr6                 30013505 79 + 175400573 ttttacactgttggtgggactgtaaactagttcaaccattgtggaagacagtgtggtgattcctgaaggatctagaact
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30244188 79 + 173848474 ttttacactgttggtgggactgtaaactagttcaaccattgtggaagacagtgtggtgattcctgaaggatctagaact
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6046559 79 +   6154872 ttttacactgttggtgggactgtaaactagttcaaccattgtggaagacagtgtggcaattcctgaaggatctagaact
i gorGor5.CYUI01015250v1       C 0 C 0
s cerAty1.NW_012002535v1          12413 76 -    863181 ttttacactgttggtag---tgtaaactagttcaaccattgtggaagacagtgtggtgattcctcaaggatctagaact
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29195185 76 -  71996105 ttttacactgttggtag---tgtaaactagttcaaccattgtggaagacagtgtggtgattcttcaaggatctagaact
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           2473 76 +    273075 ttttacactgttggtag---tgtaaactagttcaaccattgtggaagacagtgtggtgattcctcaaggatctagaact
i manLeu1.NW_012101121v1       N 0 C 0
e saiBol1.JH378364                22025 5183 +    187130 T
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random   102497 4422 +    231697 T
e rheMac8.chr4                 30268542 6233 + 172585720 I
e nomLeu3.chr1a                74686256 28983 + 122973662 I

a score=1233555.000000
s hg38.chr6_GL000254v2_alt      1047943 531 +   4827813 agaaataccatttgacccagccatcccattactgggtatatgcccaacggattataaatcacgctactataaagacacatgcacatgtatgtttattgtggcactattcacaatagcaaagaattggaaccaacccaaatgtccatcaatgatagactagattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaggatgagttcatgtcctttgtagtgacatggatgaagcaggaaaccatcattctgagcaaactatcgcgaagacagaaaatcaaacagcgcatgttctcactcataggt--gaattgaacaatgagaacacttggacacagggtggggaacatcacacactggggcctgtcgtcaggtggcgggatgggggaaggatagcattaggagaaatacctaatgtaaatgactagttaaagagggcagcaaaccaacagggcacatgcatacatatgtgacaaacctgcacgttatgcacatgtaccatagaacttaaagtataa
s panTro5.chr6                 30013584 531 + 175400573 agaaataccatttgacccagccatcccattactgggtatatgcccaaaggattataaatcatgctaccataaagacacatgcacatgtatgtttattgtggcactattcacaatagcaaagaattggaaccaacccaaatgtccatcaatgatagataggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaggatgagttcatgtcctttgtagtgacatggatgaagcaggaaaccatcattctgagcaaactatcgcgaagacagaaaatcaaacagcgcatgttctcactcataggt--gaattgaacaatgagaacactttgacacagaatggggaacatcacacactggggcctgtcgtcgggtggcgggatgggggagggatagcattaggagaaatacctaatgtaaatgactagttaaagagggcagcaaaccaacagggcacatgcatacatatgtgacaaacctgcacgttatgcacatgtaccatagaacttaaagtataa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30244267 531 + 173848474 agaaataccatttgacccagccatcccattactgggtatatgcccaaaggattataaatcatgctaccataaagacacatgcacatgtatgtttattgtggcactattcacaatagcaaagaattggaaccaacccaaatgtccatcaatgatagataggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaggatgagttcatgtcctttgtagtgacatggatgaagcaggaaaccatcattctgagcaaactatcgcgaagacagaaaatcaaacagcgcatgttctcactcataggt--gaattgaacaatgagaacacttggacacagaatggggaacatcacacactggggcctgtcgtcgggtggcgggatgggggagggatagcattaggagaaatacctaatgtaaatgactagttaaagagggcagcaaaccaacagggcacatgcatacatatgtgacaaacctgcacgttatgcacatgtaccatagaacttaaagtataa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6046638 531 +   6154872 agaaataccatttgacccagccatcccattactgggtatatgcccaaaggattataaatcatgctgctataaagacacatgcacatgtatgtttattgtggcactattcacaatagcaaagaattggaaccaacccaaatgtccatcaatgatagactagattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaggatgagttcatgtcctttgtagtgacatggatgaagcaggaaaccatcattctgagcaaactatcacgaagacagaaaatcaaacatcgcatgttctcactcataggt--gaattgaacaatgagaacacttggacacaggatggggaacatcacacactggggcctgtcgtcgggtggcgggatgggggagggatagcattaggagaaatacctaatgtaaatgactagttaaagagggcagcaaaccaacagggcacatgcatacatatgtgacaaacctgcacgttatgcacatgtaccatagaacttaaagtataa
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30274775 532 + 172585720 agaaataccatttgacccagctatcccattcctggatatatacccagaggattataaatcatgctgctataaagacacatgcacgtgtatgtttattgcagcactattcacaatagcaaagatttggaaccaactcaaatgtccatcaatgataggctggattaagaaaatgtggcatatatacaccatggaatactatgcagccataaaaaagatgagtttatgtcctttgtagcaacgtggatgaagcttgaaaccatcattctgag-acactattgcaatgacagaaaaccaaacactgcatgttctcactcataggtgggaagtaaacaatgagaacacttggacacaagatggggagcagcacacactggggcctgttgtgggatggagggatgggagagggatagcattaggagaaatacctaatgtaaatgacgagttaatgggtgcagcaaaccaacacggcacatgcatacatatgtaacaaacctgcacgttgtgcccgtgtaccctagaacttaaagtataa
i rheMac8.chr4                 I 6233 I 1
s cerAty1.NW_012002535v1          12489 525 -    863181 agaaataccatttgacccagctatcccattcctggatatatacccagaggattataaatcatgctgctataaagacacatgcacgtgtatgtttattgcagcactattcacaatagcaaagacttggaaccatcccaagtgtccatcaatgatagactggattaagaaaatgtggcatatatacaccatggaatactatgcagccataaaaaagatgagttcatgtcctttgtagcaatgtggatgaagcttgaaaccatcattctgagcaaactattgcaatgacagaaaaccaaacactgcatgttctcactcataggtgggaagtaaacaatgagaacacttggacacaagatggggaacagcacacactggggcctgttgt--------gggatgggagagggatagcattaggagaaatacctaatgtaaatgatgagttaatgggtgcagcaaacaaacacagcacatgcgtacatatgtaacaaacctgcacattgtgcccatgtaccctagaacttaaagtataa
i cerAty1.NW_012002535v1       C 0 I 2
s chlSab2.chr17                29195261 533 -  71996105 agaaataccacttgacccagctatcccattcctggatatacacccagaggattataaatcatgctgctataaagacacgtgcacatgtatgtttattgcagcactattcacaatagcaaagacttggaaccaacccaagtgtccatcaatgatagactggattaagaaaatgtggcatatatacaccgtggaatactatgcagccataaaaaagatgagttcatgtcctttgtagcaacgtggatgaagcctgaaaccatcattctgagcaaactattgcaatgacagaaaaccaaacactgcgtgttctcactcataggtgggaagtaaacaatgagaacacttggacacaagatggggaacagcacacactggggcctgttgtgggatggagggatgggagagggatagcattaggagaaatacctaatgtaaatgacgagttagtgggtggagcaaaccaacacagcacatgcgtacatatgtaacaaacctgcacgtagtgcccatgtaccctagaacttaaagtatga
i chlSab2.chr17                C 0 I 1
s manLeu1.NW_012101121v1           2549 525 +    273075 agaaataccatttgacccagctatcccattcctggatatatacccagaggattataaatcatgctgctataaagacacatgcacgtgtatgtttattgcagcactattcacaatagcaaagacttggaaccatcccaagtgtccatcaatgatagactggattaagaaaatgtggcatatatacaccatggaatactatgcagccataaaaaagatgagttcatgtcctttgtagcaacgtggatgaagcttgaaaccatcattctgagcaaactattgcaatgacagaaaaccaaacactgcatgttctcactcataggtgggaagtaaacaatgagaacacttggacacaagatggggaacagcacacactggggcctgttgt--------gggatgggagagggatagcattaggagaaatacctaatgtaaatgatgagttaatgggtgcagcaaacaaacacagcacatgcgtacatatgtaacaaacctgcacattgtgcccatgtaccctagaacttaaagtataa
i manLeu1.NW_012101121v1       C 0 I 2
e saiBol1.JH378364                22025 5183 +    187130 T
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e macFas5.chr4_KE145577_random   102497 4422 +    231697 T
e nomLeu3.chr1a                74686256 28983 + 122973662 I

a score=32012.000000
s hg38.chr6_GL000254v2_alt      1048474 14 +   4827813 ttttaaaaaaatgt
s panTro5.chr6                 30014115 14 + 175400573 ttttaaagaaatgt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30244798 14 + 173848474 ttttaaagaaatgt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6047169 14 +   6154872 ttttaaaaaaatgt
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30275308 14 + 172585720 Ttaaaaacaaatgt
i rheMac8.chr4                 I 1 C 0
s macFas5.chr4_KE145577_random    98075 14 +    231697 TTTTATAGAAATGA
i macFas5.chr4_KE145577_random T 4422 C 0
s cerAty1.NW_012002535v1          13016 14 -    863181 tttaaaaaaaatgt
i cerAty1.NW_012002535v1       I 2 C 0
s chlSab2.chr17                29195795 14 -  71996105 Ttaaaaaaaaatgt
i chlSab2.chr17                I 1 C 0
s manLeu1.NW_012101121v1           3076 14 +    273075 tttaaaaaaaaTGT
i manLeu1.NW_012101121v1       I 2 C 0
e saiBol1.JH378364                22025 5183 +    187130 T
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         223715 42609 -    383796 T
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e nomLeu3.chr1a                74686256 28983 + 122973662 I

a score=34791.000000
s hg38.chr6_GL000254v2_alt      1048488 9 +   4827813 aagagaaaa
s panTro5.chr6                 30014129 9 + 175400573 aagagaaaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30244812 9 + 173848474 aagagaaaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6047183 9 +   6154872 aagagaaaa
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30275322 9 + 172585720 gagagaaaa
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    98089 9 +    231697 AAGAGAAAA
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          13030 9 -    863181 gagagaaaa
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29195809 9 -  71996105 gagagaaaa
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           3090 9 +    273075 Gagagaaaa
i manLeu1.NW_012101121v1       C 0 C 0
s aotNan1.NW_018496904v1         181106 9 -    383796 aagagaaaa
i aotNan1.NW_018496904v1       T 42609 C 0
e saiBol1.JH378364                22025 5183 +    187130 T
e otoGar3.GL873550             16816500 5111 -  18854210 I
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e nomLeu3.chr1a                74686256 28983 + 122973662 I

a score=3153397.000000
s hg38.chr6_GL000254v2_alt      1048497 732 +   4827813 gaataccaaagttaattgcaaggatccttaataagaactacttacattggaagcaaaccacagagaattgtaaggagtcatgtgacagagaggaccaggatgccatgaaaatggacttggctaaaaataggtcatttaacccttggctgactggcatctctctagattttcagttatacaatgttcaatctgctgtgcaaggtaattccatcttgcaaaggatttgatgttacattctaccacacatacaactgaattaaacttttacggaattggaaatgcaaataattgatcaaaataaatcaaacaagaaaagaataggaaggaataaccagtgatggaatatcaaatatgaatggaaaacagaataggactgctaaaaag-aaaaaaag------cttcagaagcacataatagccgtgttattt-agaatcatagtggtgtgcaaatgacttctatcacatctcattcaataccagagcaaaagatgttaagtttattatgtaatgcccaccaaatagctagcttttg----------aaaaa-aacttgtttctcaatttgagctaaccatttcaggctactgcatcaaaccaaagttattggcatcatgctaagctagatgtgttgactgaagtatgagattcacacttttgtaaatgaaaagcaatttgattaggcaat--------gttttcctaagtgaaagcaagtt-attagagaagtaaagaaacaaaagaatggctactccatata
s panTro5.chr6                 30014138 734 + 175400573 gaataccaaagttcattgcaaggatccttaataagaactacttacattggaagcaaaccacagagaattgtaaggagtcatgtgacagagaggaccaggatgccatgaaaatggacttggctaaaaataggtcatttaacccttggctgactagcatctctctagattttcagttatacaatgttcaatctgCtgtgcaaggtaattccatcttgcaaaggatttgatgttacattctaccacacatacaactgaattaaacttttacggaattggaaatgcaaataattgatcaaaataaatcaaacaagaaaagaataggaaggaataaccagtgatggaatatcaaatatgaatggaaaacagaataggactgctaaaaag-aaaaaaaaa-----cttcagaagcacataatagccgtgttattt-agaatcatagtggtgtgcaaatgacttctatcacatctcattcaataccagagcaaaagatgttaagtttattatgtaatgcccaacaaatagctagcttttg----------aaaaa-aacttgtttctcattttgagctaaccatttcaggctactgcatcaaaccaaagttattggcatcatgctaagctagatgtgttgactgaagtatgagattcacacttttgcaaatgaaaagcaatttgattaggcaat--------gttttcctaagtgaaagcaagtttattagagaggtaaagaaacaaaagaatggctactccatata
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30244821 733 + 173848474 gaataccaaagttcattgcaaggatccttaataagaactacttacattggaagcaaaccacagagaattgtaaggagtcatgtgacagagaggaccaggatgccatgaaaatggacttggctaaaaataggtcatttaacccttggctgactggcatctctctagattttcagttatacaatgttcaatctgCtgtgcaaggtaattccatcttgcaaaggatttgatgttacattctaccacacatacaactgaattaaacttttacggaattggaaatgcaaataattgatcaaaataaatcaaacaagaaaa-aataggaaggaataaccagtgatggaatatcaaatatgaatggaaaacagaataggactgctaaaaag-aaaaaaaaa-----cttcagaagcacataatagccgtgttattt-agaatcatagtggtgtgcaaatgacttctatcacatctcattcaataccagagcaaaagatgttaagtttattatgtaatgcccaacaaatagctagcttttg----------aaaaa-aacttgtttctcattttgagctaaccatttcaggctactgcatcaaaccaaagttattggcatcatgctaagctagatgtgttgactgaagtatgagattcacacttttgcaaatgaaaagcaatttgattaggcaat--------gttttcctaagtgaaagcaagtttattagagaagtaaagaaacaaaagaatggctactccatata
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6047192 731 +   6154872 gaataccaaagttaattgcaaggatccttaataagaactacttacattggaagcaaaccacagagaattgtaaggagtcatgtgacagagaggaccaggatgccatgaaaacggacttggctaaaaataggtcatttgacccttggctgactggcatctctctagattttcagttatacaatgttcaatctgCtgtgcaaggtaattccatcttgcaaaggatttgatgttacattctaccacacatacaactgaattaaacttttacagaattggaaatgcaaataattgatcaaaataaatcaaacaagaaaagaat----aggaataaccagtgatggaatatcaaatatgaatggaaaacagaataggactgctaaaaag-aaaaaaaaa-----cttcagaagcacataatagccgtgttattt-agaatcatagtggtgtgcaaatgacttctatcacatctcattcaataccagagcaaaagatgttaagtttattatgtaatgcccaccaaatagctagcttttga---------aaaaa-aacttgtttctcaatttgagctaaccatttcaggctactgcatcaaaccaaagttattggcatcatgctaagctagatgtgttgactgaagtatgagattcacacttttgtaaatgaaaagcaatttgattaggcaat--------attttcctaagtgaaagcaagtttattagagaagtaaagaaacaaaagaatggctactccatata
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74715239 742 + 122973662 GaattccaaggttcatttcaaggatccttaacaagaactacttacattggaagaaaaccacagagaattgtaaggacccatgtgacagagaggaccagggtgccatgaaaatggccttggctaaaaataggtcatttgatccttggctcactggcatctctctagATTTTCAATGATACAatgttcaatctgctgtgtaaggtaattccatcttgcaaaggatttgatgttacattttaccacccatacaactgaattaaacttttacag-attggaaatgcacatcattgatcaaaacaaatgaaacaagaaaagagtaggaaggaatacccagtgatggaatagcaaatatgaatggaaaacagaataggactgctaaaaag-aaaaaaaaa-----attcagaagcacataataacagtgctatat-agaatcatagttgtgtccaaatcacttctatcacaactcatttaataccacaacaaaagatgttaagtttattatagaatgcccactcaatagccagtttttgaaaaaaaaataaaaa-aactattttctcaattcgagctaaccatttcgggctatggcatcaaaccaaagtcattggcatcatgttaagctagatgtgttgaccaaagtatgaggttcacatttttgtaaatgaaaagcaatttggttaggcaat---------ttttcctaagtgaaagcaagtttattagagaagtaaagaaacaaaagaacggctatgccataga
i nomLeu3.chr1a                I 28983 C 0
s rheMac8.chr4                 30275331 736 + 172585720 gaataccaaaattcattgcaaggatccttaacaagaactacttacattggaagcaaaccacagagaattgtaaggagccacgtaacagagaggaccaggatgccatgaaaatgacttcggctaaaaataggtcatttaacccttggctcactggcatctctccagattttcaattttacaatgttcaatttgctgtgcaaggtaattccatcttgcaaaggatttgatgttacattctaccacacataaaactgaattaaacttttacggaattggaaatgcacatcattgatcaaaataaatcaaacatgaaaagagtaggaaggaataaccagtgatggaatagcaaatgtgaatggaaaacagaataggactgctaaaaag-acaaaaaaaa---ccttcagaagcacataatagctgtgttatttaaaaatcatagtggtctccaaatgacttctatcacatctcattcaataccatagcaaaagatgttaagtttattatggaatgcccaccaaatagctagattttg----------aaaaa-accttgtttctcaatttgagctaaccatttcaggctactgcttcaaaccaaagttactggcatcgtgctaagctagatgtgttgactgaagtatgagattcacacttttgtaaatgaaaagcaatttgattaggcaat--------gtttttctaagtgaaagcaagtttact-gagaattaaagaaacaaaagaatggctactccatata
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    98098 728 +    231697 GAATTTCAAAGTTCACTACAAGAATCCTTAACAAGAACTACTTACATTTGAAGAAAACCACACAGAATCAT--------ACGTGACAGAGAGGACCAGGATGCCATGAAAATGGCCTTGGCTACAAATAGGTCATTTAACCCTTGGCTCACTGGCATCTCTCTAGGTTTTCAATTATACAatgttcaatctgctgtacaaggtaattccatcttgcaaaggatctgatgttacattttaccacacatgaaactgaattaaacttttacagaattgaaaatgcacatcattgatcaaaacaaatgaaacaagaaaagagtaggaaggaatatccagtgatggaatggcaaatatgaatggaaaacagaataggactgctaaaatgaaaaaaaaaaa---aaattggaagcacataataga-gtgctatat-ggaatcacagtggtgtccaaatcagttctatcacatctcattgattaccacaacaaaagatgct-agtttattatagaatgtccaccgaatagccagtttttg----------aaaaacaacttgtttctcaattcgagctaaccatttggggctacggcatcaaatcgaagttattggcatcatcttaagctagatgtgctgaccaaagtatgagattcacatttttgtaagtgaaaagcaatttgattaggcaat--------ttttctctaagtgaatgcaagtttattagagaagtgaagaaacaaaagaacagctactccataga
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          13039 735 -    863181 gaataccaaaattcattgcaaggatccttaacaagaactacttacattggaagcaaaccacagagaattgtaaggagccatgtgacagagaggaccaggatgccatgaaaatgaccttggctaaaaatagatcatttaacccttggctcactggcatctctccagattttcaattatacaatgttcaatctgCtgtgcaaggtaattccatcttgcaaaggatttgatgttacattctaccacacataaaactgaattaaacttttacagaattggaaatgcacatcattgatcaaaataaatcaaacatgaaaagagttggaagaaataaccagtgatggaatagcaaatgtgaatggaaaacagaataggactgctaaaaag-acaaaaaaaa----cttcagaagcacataatagctgtgttatttaaaaatcatagtggtctccaaatgacttctatcacatctcattcaataccagagcaaaagatgttaagtttattatggaatgcccaccaaatagctagtttttg----------aaaaa-accttgtttctcaatttgagctaaccatttcaggctactgcttcaaaccaaagttactggcatcatgctaagctagatgtgttgactgaagtatgagattcacacttttgtaaatgaaaagcaatttgattaggctaa--------gtttttctaagtgaaagcaagtttact-gagaattaaagaaacaaaagaatggctactccagata
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29195818 732 -  71996105 gaataccaaaattcattgcaaggatccttaacaagaactacttacatttgaagaaaaccacagagaattgtaaggagccatgtgacagagaggaccaggatgccatgaaaatgaccttggctaaaaataggtcatttaacccttggctcactggcatctctccagattttcaattatacaatgttcaatctgctgtgcaaggtaattccatcttgcaaaggatttgatgttacattctaccacacataaaactgaattaaa-ttttacggaattggaaatgcacatcattgatcaaaataaatcaaacatgaaaagagtaggaaggaataaccagtgatggaatagcaaatgtgaatggaaaacagaataggactgctaaaaag-ac--aaaaag----cttcagaagcacataatagctgtgttatttaaaaatcacagtggtctccaaatgacttctatcacatctcattcaataccagagcaaaagatgttaagtttattatggaatgcccaccaagtagctagcttttg----------aaaaa-accttgtttctcaatttgagctaaccatttcaggctagtgcttcaaaccgaagttactggcatcatgctaagatagatgtgttgactgaagtatgagattcacacttttgtaaatgaaaagcaatgtgattaggcaaa--------gtttttctaagtgaaagcaagtttact-gagaattaaagaaacaaaagaatggctactccatata
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           3099 735 +    273075 gaataccaaaattcattgcaaggatccttaacaagaactacttacattggaagcaaaccacagagaattgtaaggagccatgtgacagagaggaccaggatgccatgaaaatgaccttggctaaaaatagatcatttaacccttggctcactggcatctctccagattttcaattatacaatgttcaatctgCtgtgcaaggtaattccatcttgcaaaggattggatgttacattctaccacacataaaactgaattaaacttttacagaattggaaatgcacatcattgatcaaaataaatcaaacatgaaaagagtaggaagaaataaccagtgatggaatagcaaatgtgaatggaaaacagaataggactgctaaaaag-acaaaaaaaa----cttcagaagcacataatagctgtgttatttaaaaatcatagtggtctccaaatgacttctatcacatctcattcaataccagagcaaaagatgttaagtttattatggaatgcccaccaaatagctagtttttg----------aaaaa-accttgtttctcaatttgagctaaccatttcaggctactgcttcaaaccaaagttactggcatcatgctaagatagatgtgttgactgaagtatgagattcacacttttgtaaatgaaaagcaatttgattaggcaaa--------gtttttctaagtgaaagcaagtttact-gagaattaaagaaacaaaagaatggctactccagata
i manLeu1.NW_012101121v1       C 0 C 0
s aotNan1.NW_018496904v1         181115 742 -    383796 gaatatcaaagttcactgcaagaatccttaacaagaactacttacattggaagaaaaccacagagaattgtaaggagccatgtgacagagggaacatggattccatgaaaatggccttggctagaaatagatcatttgatccttggctcactggcatctctctagattttcaactatacaatgtccaatctgatgtgcatggtaaatccatcttgcaaaggatatgatgttacattttaccacacatacaactgaattaaacttttacagaattggaaatgcacaacatagatcaaaataaatgaaaccacaaaatagaagaaaggaataaccagtgatggaataggaaatatgaatagaaaacaaaagaggactgcaaaaaat-taaaaaaaaaaacacttcagatgcacgtaatagcagtactattt-agaatcatagtgctgtcttaattacttctatcacatctcattcaatagcacaacaaaagatgttaagtttattatagactgcccactgagaagccagtatttg----------aaaaa-a-tttctttctcaatttg----aactatttctgactactccatcaaaccaaagtcattgacatcatgctcagctagatgtgttgactgaagtatgagattcacatttttataaatgaaaagcaatctgattaggcaaTTTGGCAATGTTTTTCTaagtgaaagcaagtttactagagaagcaaagaaacaaaacaagggcagcaccacaga
i aotNan1.NW_018496904v1       C 0 I 38
e saiBol1.JH378364                22025 5183 +    187130 T
e otoGar3.GL873550             16816500 5111 -  18854210 I
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=14084.000000
s hg38.chr6_GL000254v2_alt      1049229 9 +   4827813 gcggag-ttt
s panTro5.chr6                 30014872 9 + 175400573 gcggag-ttt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30245554 9 + 173848474 gcggag-ttt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6047923 9 +   6154872 gcggag-ttt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74715981 6 + 122973662 gcagag----
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30276067 8 + 172585720 gcagag-tt-
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    98826 8 +    231697 gcagag-TT-
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          13774 8 -    863181 gcagag-tt-
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29196550 9 -  71996105 gcagagTTT-
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           3834 8 +    273075 gcagag-TT-
i manLeu1.NW_012101121v1       C 0 C 0
e saiBol1.JH378364                22025 5183 +    187130 T
e otoGar3.GL873550             16816500 5111 -  18854210 I
e aotNan1.NW_018496904v1         181857 38 -    383796 I
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=7885.000000
s hg38.chr6_GL000254v2_alt      1049238 6 +   4827813 ttgttt
s panTro5.chr6                 30014881 6 + 175400573 ttgttt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30245563 5 + 173848474 ttg-tt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6047932 6 +   6154872 ttgttt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74715987 4 + 122973662 --gttt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30276075 3 + 172585720 ---ttt
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    98834 4 +    231697 --GTTT
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          13782 3 -    863181 ---ttt
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29196559 3 -  71996105 ---TTT
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           3842 3 +    273075 ---TTT
i manLeu1.NW_012101121v1       C 0 C 0
s aotNan1.NW_018496904v1         181895 6 -    383796 ttgttt
i aotNan1.NW_018496904v1       I 38 T 43702
e saiBol1.JH378364                22025 5183 +    187130 T
e otoGar3.GL873550             16816500 5111 -  18854210 I
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=940234.000000
s hg38.chr6_GL000254v2_alt      1049244 220 +   4827813 tt----ttttttaagtgtaggcaaatgtttagtgaagatgatatttcaataagaaaattggtgcttgggacgtgcttccactaaatttgagatatcttagacaaaacaaagtcttattttcaagacattatttttatcagactgaagtcttggaactatttgatctagttactctatgttctcaactgtgttaactaattgaaaacaacattgttatt-------aaaggt
s panTro5.chr6                 30014887 220 + 175400573 tt----ttttttaagtgtaggcaaatgtttagtgaagatgatatttcaataagaaaattggtgcttgggacgtgcttccactaaatttgagatatcttagacaaaacaaagtcttattttcaagacattatttttatcagactgaagtcttggaactatttgatctagttactctatgttctcaactgtgttaactaatggaaaacaacattgttatt-------aaaggt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30245568 220 + 173848474 tt----ttttttaagtgtaggcaaatgtttagtgaagatgatatttcaataagaaaattggtgcttgggacgtgcttccactaaagttgagatatcttagacaaaacaaagtcttattttcaagacattatttttatcagactgaagtcttggaactatttgatctagttactctatgttctcaactgtgttaactaatggaaaacaacattgttatt-------aaaggt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6047938 220 +   6154872 tt----ttttttaagtgtaggcaaatgtttagtgaagatgatatttcaataagaaaattggtgcttgggacgtgcttccactaaatttgagatatcttagacaaaacaaagtcttattttcaagacattatttttatcagactgaagtcttggaactatttgatctagttactctatgttctcaactgtgttaactaattgaaaacaacattgttatt-------aaaggt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74715991 227 + 122973662 tt----ttttttaattgtaggcaaatatttagtgaggatgatatttcaataagaaaattggtgcttggggcatatttccactaaatttgagacatcttagacaaaacaaagacttattttctaggcattagttttatggcactgaagtcttggaacgatttgatctagttactctatgttctcaattgtgttaactcattgaggagaacattgttatttaataacaacgat
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30276078 220 + 172585720 tg----ttttttaagtgtaggcaaatatttagtgaagacgatatttcaataagaaaactggcgcttgggacatgcttccactaaatttgagacatcttagacagaacaaagttttatttttgaggcattatttttatgggattgaagtcttggaactatttgatctagttactgtatgttctcaactgtgttaactcattgaaaacaacattgttatt-------aaaggt
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    98838 231 +    231697 TGTTTTTTTTTTTAATGTAggcaaatgtttagtgaagatgatatttcaataagaaaattggtgcttggggcatatttccactaaatttgagacatcttggacaaaacaaagacttattttcaaggcattagttttaagggactgaagtcttggaactatttgatctagttactctatgttctcaactgtgttaactcattgaagagaacattgttatttaataacaatggt
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          13785 219 -    863181 tg----ttttttaagtgtaggcaaatatttagtgaagatgatatttcaataagaaaactggcgcttgggacatgcttccactaaatttgagacatcttagacagaacaaagttttagttttgaggcattatttttatgggactgaagtcttggaactatttgatctagttactgtatgttctcaactgtgttaactcattgaaaa-aacattgttatt-------aaaggt
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29196562 216 -  71996105 TG----TTTTTTAAGTGTAGGCAAATATTTAGTGAAGATGATATTTCAATAAGAAAACTGGCGCTTGGGACATGCTTCCACTAAATTTGAGACATCTT----AGAACAAAGTTTTATTTTTGaggcattatttttatgggactgaagtcttggaactatttgatctagttactgtatgttctcaactgtgttaactcattgaaaacaacattgttatt-------aaaggt
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           3845 219 +    273075 TG----TTTTTTAAGTGTAGGCAAATATTTAGTGAAGATGATATTTCAATAAGAAAACTGGCGCTTGGGACATGCTTCCACTAAATTTGAGACATCTTAGACAGAACAAAGTTTTAGTTTTGAGGCATTATTTTTATGGGACTGAAGTCTTGGAACTATTTGATCTAGTTACTGTATGTTCTCAACTGTGTTAACTCATTGAAAA-AACATTGTTATT-------AAAGGT
i manLeu1.NW_012101121v1       C 0 C 0
s aotNan1.NW_018496904v1         138199 220 -    383796 TT----TTTTTTAAGTATACGCAGATGTTTTTTGAAGAAGATATTTCAATAAGAAAACGGGCCCTTGGGGCATATTTCCACTAAATTTGAGAAATCTTAGACAAAACAAAGACTTATTTTCaaggcattatttttatggaaatgaagacttggaactatttaatctagttactctacgttcaaaactgtgttaactcattaaagagaaaattgttatt-------ataggt
i aotNan1.NW_018496904v1       T 43702 C 0
e saiBol1.JH378364                22025 5183 +    187130 T
e otoGar3.GL873550             16816500 5111 -  18854210 I
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=1019536.000000
s hg38.chr6_GL000254v2_alt      1049464 216 +   4827813 attcacaa-gaaaaattcagagttactgttgcatatcctttctctgtttcaaactgttTTCTCCTAAGCACCCAAGGCTCTGTGATGTCTGAAACAGTTAATCATTAATTTTAAAAGATAAGCTTATCGTGgaattagaaaaaaaaactattttaaaattcatatggatcc--aataagagctcatatagcaaagagaatactaag------caaaaagaacaaa
s panTro5.chr6                 30015107 215 + 175400573 attcacaa-gaaaaattcagagatactgttgcatatcctttctctgtttcaaactgttTTCTCCTAAGCACCCAAGGCTCTGTGATGTTTGAAACAGTTAATCATTAATTTTAAAAGATAAGCTTATCGTGgaattagaaaaaaaa-ctattttaaaattcatatggatcc--aataagagctcatatagcaaagagaatactaag------caaaaagaacaaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30245788 215 + 173848474 attcacaa-gaaaaattcagagatactgttgcatatcctttctctgtttcaaactgttTTCTCCTAAGCACCCAAGGCTCTGTGATGTTTGAAACAGTTAATCATTAATTTTAAAAGATAAGCTTAtcatggaattggaaaaaaaa-ctattttaaaattcatatggatcc--aataagagctcatatagcaaagagaatactaag------caaaaagaacaaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6048158 215 +   6154872 attcacaa-gaaaaattcagagatactgttgcatatcctttctctgtttcaaactgttTTCTCCTAAGCACCCAAGGCTCTGTGATGTCTGAAACAGTTAATCATTAATTTTAAAAGATAAGCTTATCGTGgaattagaaaaaaaa-ctattttaaaattcatatggatcc--aataagagctcatatagcaaagagaatactaag------caaaaagaacaaa
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74716218 213 + 122973662 attggcaa-gaaaatctcagagatactgttgtatctcctttctctgtcttgaactgttTTCCCCTCAGCACCCAAGGCTCTGTGATGTCTCAAATTTTTAATTATAAATTTTAAAAGAGAAGCTTAtcatggaattagaaaaaaa--ctattttacaatgcatatggatcc--aaaaagagctcgtatagccaggagaatcctaag------caaaaagaa-aaa
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30276298 214 + 172585720 attcacaa-gaaaaattcagagatactgttgcatctcctttctctgtttcaaactgttTTCTCCTAAGCACCCAAGGCTCTGTGATGTCTCAAACATTTAATCATTAATTTTAAAAGAGAAGCTTAttatggaattagaaaaaaa--ctattttaaaattcatatggatcc--aataagagctcatatagccaaaagaatattaag------caaaaaaaacaaa
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    99069 203 +    231697 attgccag-gaaaaacttagagatactgttgtatttccttactctgtctc----------------aGCACCCAAAGCTCTGTGAT-TCTCAAACTTTTAATCACGAATTTAAAAAGAGAAGCTTAtcatggaattagaaaaaaa--ctattttaaaattcatatggatcc--aaaaagagcttgtacagccagaagaatcctaagaaaaaaaaaaaaaaaaaaa
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          14004 211 -    863181 attcacaa-gaaaaattcagagatactgttgcatctactttctctgtttcaaactgttTTCTCCTAAGCACCCAAGGCTCTGTGATGTCTCAAACATTTAATCATTAATTTTAAAAGAGAAGCTTATTATGGG---Aaaaaaaaa--ctattttaaaattcatatggatcc--aataagagctcatatagccaaaagaatattaag------caaaaagaacaaa
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29196778 214 -  71996105 attcacaa-gaaaaattcagagatactgttgcatctcctttctctgtttcaaactgttTTCTCCTAAGCACCCAAGGCTCTGTGATGTCTCAAACATTTAATCATTAATTTTAAAAGAGAAGCTTAttatggaattagaaaaaaa--ctattttaaaattcatatggatcc--aataagagctcatatagccaaaagaatattaag------caaaaagaacaaa
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           4064 211 +    273075 ATTCACAA-GAAAAATTCAGAGATACTGTTGCATCTACTTTCTCTGTTTCAAACTGTTTTCTCCTAAGCACCCAAGGCTCTGTGATGTCTCAAACATTTAATCATTAATTTTAAAAGAGAAGCTTATTATGGG---Aaaaaaaaa--ctattttaaaattcatatggatcc--aataagagctcatatagccaaaagaatattaag------caaaaagaacaaa
i manLeu1.NW_012101121v1       C 0 C 0
s saiBol1.JH378364                16842 216 +    187130 atttgcaaggaaaaactcagagatattgttgaatctcctttctctgtctcaaactgttTTTCCCTCAGCACCCAAGGCTCTGTGATGTCTTAAACTCTTAATCATTAATTTAAAAAGAGAAGCTTAtcacataattagaaaaaaa--ctattatacaattcatatggatcc-aaaaaagagcttatatagccaggagaatcttaag------caaaaagaacaaa
i saiBol1.JH378364             T 5183 C 0
s aotNan1.NW_018496904v1         138419 215 -    383796 atttgcaa-gaaaaactcagagataccgtattatcttctttctccatctcaaactgttTCCCCCTCAGCACCCAAGGCTCTGTGATGTCTTGAACTTTTAATCACTAATTT-AAAAGAGAAGCTTAtcgcacaattagaaaaaaa--ctattttaaaattcatatggatctaaaaaaagagcttgtatacttgtgagaatcctaag------caaaaagaacaaa
i aotNan1.NW_018496904v1       C 0 I 43708
e otoGar3.GL873550             16816500 5111 -  18854210 I
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=360044.000000
s hg38.chr6_GL000254v2_alt      1049680 79 +   4827813 gctggaggcagcacactaccccacttaaaagtatactgtgaggctacagtaaacaaaacagcatgatactggtacaaaa
s panTro5.chr6                 30015322 79 + 175400573 gctggaggcagcacactaccccacttaaaagtatactataaggctacagtaaacaaaacagcatgatactggtacaaaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30246003 79 + 173848474 gctggaggcagcacactaccccacttaaaagtatactataaggctacagtaaacaaaacagcatgatactggtacaaaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6048373 79 +   6154872 gctggaggcagcacactaccccacttaaaattatactatgaggctacagtaaacaaaacagcatgatactggtacaaaa
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74716431 79 + 122973662 gctagaggcatcaggctacctgacttaaaactctactacaaggctacagtaaccaaaacagcatggtactggtacaaaa
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30276512 79 + 172585720 gctggaggcatcatgctatgccacttaaaactatactataaggctacagtaaacaaaacagcatgatactggtacaaaa
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    99272 51 +    231697 gctggaggcatcaggctacccgacttaaaactatactacaaggc----------------------------tacaaaa
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          14215 79 -    863181 gctggaggcatcatactatgccacttaaaactatactataaggctacagtaaacagaacagcatgatactggtacaaaa
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29196992 79 -  71996105 gctggaggcatcatgctacgccacttaaaactatactataaggctacagtaaacaaaacagcatgatactggtacaaaa
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           4275 79 +    273075 gctggaggcatcatactatgccacttaaaactatactataaggctacagtaaacagaacagcatgatactgctacaaaa
i manLeu1.NW_012101121v1       C 0 C 0
s saiBol1.JH378364                17058 79 +    187130 gctggaagcatcaggctacctgacttaaagctatactaccaggctacagtaaccaaaacagcatggtaatgctacaaaa
i saiBol1.JH378364             C 0 C 0
s aotNan1.NW_018496904v1         182342 79 -    383796 gctggaggcatgaggctacctaacttgaaactataccacaaggctacagtaacaaaaacagcatggtaatggtacaaaa
i aotNan1.NW_018496904v1       I 43708 T 43698
e otoGar3.GL873550             16816500 5111 -  18854210 I
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=1945023.000000
s hg38.chr6_GL000254v2_alt      1049759 378 +   4827813 acaggcacatagaccaatggaacagaatagagaattcacaaaaaaagtccgcacatctacaaccatttgatcttcaacaaacctgacaaaaacaagcaacggggaaaggattccctatttaataaatggtgatgggagaactggctagccatatgcagaaaattgaaactagaccccttccttacaccttacacaaaaattaactcaagatagattaaagacttaaatgtaaaacacaaaattat--aaaaaccctgaaagaaaatctaggcaataccattcaggacacaggca-tgggcaaagattttatgatgaaatcgccaaaagcatctgccacaaaagcaaaaattggcatatgggatctaattaaacaaaagagc
s panTro5.chr6                 30015401 378 + 175400573 acaggcacatagaccaatggaacagaatagagaattcacaaaaaaagtccgcacatctacaaccatttgatcttcaacaaacctgacaaaaacaagcaacggggaaaggattctctatttaataaatgatgatgggagaactggctagccatatgcagaaaattgaaactagaccccttccttacaccttacacaaaaattaactcaagatagattaaagacttaaatgtaaaacacaaaactat--aaaaaccctgaaacaaaatctaggcaataccattcaggacacaggca-tgggcaaagattttatgatgaaatcgccaaaagcgtctgccacaaaagcaaaaattggcaaatgggatctaattaaacaaaagagc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30246082 378 + 173848474 acaggcacatagaccaatggaacagaatagagaattcacaaaaaaagtccgcacatctacaaccatttgatcttcaacaaacctgacaaaaacaagcaacggggaaaggattccctgtttaataaatgatgatgggagaactggctagccatatgcagaaaattgaaactagaccccttccttacaccttacacaaaaattaactcaagatagattaaagacttaaatgtaaaacacaaaactat--aaaaaccctgaaacaaaatctaggcaataccattcaggacacaggca-tgggcaaagattttatgatgaaatcgccaaaagcgtctgccacaaaagcaaaaattggcaaatgggatctaattaaacaaaagagc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6048452 378 +   6154872 acaggcacatagaccaatggaacagaatagagaattcacaaaaaaagtccgcacatctacaaccatttgatcttcaacaaacctgacaaaaacaagcaacagggaaaggattccctatttaataaatggtgatgggagaactggctagccatatgcagaaaattgaaactagaccccttccttacaccttacacaaaaattaactcaagatagattaaagacttaaatgtaaaacacaaaattat--aaaaaccctgaaagaaaatctaggcaataccattcaggacacaggca-tgggcaaagattttatgatgaaatcgccaaaagcgtctgccacaaaagcaaaaattggcaaatgggatctaattaaacaaaagagc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74716510 377 + 122973662 acaggcacatagaccaatggaacagaatagagaactca-gaaaggagaccacgtatctacaactatttgatctttaaaaaacctgacaaaaacaagcaatggggaaatgattccctatttcataaatggtgctgggagaactggctagccataggcagaaaattgaaactggaccccttccttatactttacacaaaagttaactcaagatgggttaaaaacttaagtgtgaaacccaaaactag--aaaaaccctggaagaaaatctaggcaataccattcaggatatatgca-tgagcaaagattttatgatgaaatcgccaaaagcatataccactaaagcaaaaattgacaaatgggatctaattaaacaaaagagc
i nomLeu3.chr1a                C 0 I 24
s rheMac8.chr4                 30276591 379 + 172585720 acaggcacatagaccaatggaacagaatagagaactcacaaaaaaagactgcacatctacaaccatttgatcttcaacaaacctgac-aaaacaagcaatggggaaaggattccctatctagtaaatggtgatgggagaactggctagccatatgcagaaaactgaaactggaccccttccttacactttacacaaaaattaactcaatatagattaaagacttaaatgtaaaacgcaaaactataaaaaaaccctgaaagaaaatctaggcaataccactcaggacacaggca-tgggcaaagattttatgaagaaatcgccaaaagcatctggcacaaaagcaaaaatgggcaagtgggatctaattaaacaaaagagc
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    99323 377 +    231697 acagtcacataaaccaatgggacagaatacagaactca-gaaaagagaccgcacaactacaactatttgatcttcaacaaacctgacaaaaacaagcaatggggaaaggattccctgtttaataaatgatgctgggagaactggctagccatatgcagagaattgaaactggacccctttcttacattttacacaaaagttaactcaagatggattaaagacttaaatgtaaaacccaaaac--tagaaaaacacgggaagaaaatctaggcaataccattccggacataggca-tgggcaaagattttatgatgagatcgccaaaagcatctgccacaaaagcaaaacttgataaatgggatctaattaaacaaaagagc
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          14294 378 -    863181 acaggcacatagaccaatggaacagaatagagaactcacaaaaaaagactgcacatctacaaccatctgatcttcaacaaacctgac-aaaacaagcaatggggaaaggattccctatctagtaaatggtgatgggagaactggctaaccatatgcagaaaattgaaactggaccccgtccttacaccttacgcaaaaattaactcaatatagattaaagacttaaatgtaaaacgcaaaactata-aaaaactctgaaagaaaatctaggcaataccattcaggacacaggca-tgggcaaagattttatgaagaaatcgccaaaagcatctgacacaaaagcaaaaatgggcaagtaggatctaattaaacaaaagagc
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29197071 378 -  71996105 acaggcacatagaccaatggaacagaatagagaactcacaaaaaaagactgcacatctacaaccatttgatcttcaacaaacctgac-aaaacaagcaatggggaaaggattccctatctagtaaatggtgatgggagaactggctaaccatatgcagaaaactgaaactggaccccttccttacactttacacaaaaattaactcaatatagattaaagacttaaatgtaaaacgcaaaactata-aaaaaccctgaaagaaaatctaggcaataccactcaggacacaggca-tgggcaaagattttatgaagaaatcgcgaaaagcatctggcacaaaagcaaaaatgggcaagtgggatctaattaaacaaaagagc
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           4354 378 +    273075 acaggcacatagaccaatggaacagaatagagaactcacaaaaaaagactgcacatctacaaccatctgatcttcaacaaacctgac-aaaacaagcaatggggaaaggattccctatctagtaaatggtgatgggagaactggctaaccatatgcagaaaattgaaactggaccccgtccttacaccttacgcaaaaattaactcaatatagattaaagacttaaatgtaaaacgcaaaactata-aaaaactctgaaagaaaatctaggcaataccattcaggacacaggca-tgggcaaagattttatgaagaaatcgccaaaagcatctgacacaaaagcaaaaatgggcaagtaggatctaattaaacaaaagagc
i manLeu1.NW_012101121v1       C 0 C 0
s saiBol1.JH378364                17137 377 +    187130 acaggcacatagaccaatggaacagaacagaggactca-gaaataagaccgcacatctacaaccattggatcttcaacaaacctgacaaaaacaagcagtggggaaaggattctctatttaagaaatggtgctgggagaactggctggccatatgcagaaaactgaaactggaccctttccttacaccttacacaaaaattaactcaagatggattaaagacttaaatgtaaaactcaaaactat--aaaaactctggaagaaaatctaggcaatatcattcaggacataggca-taagcaaagatgttgtgatgaaattgccaaaagcaactgccacaaaagcaaaaattaacaaatgggatctaactaaacaaaggagt
i saiBol1.JH378364             C 0 C 0
s aotNan1.NW_018496904v1         138723 375 -    383796 acaggcatgtacacaaatggcacagaa-aaagaactca-gaaagaagacctctcatttacaaccatgtgctttccaacaaatgtgacaaaaacaggcaacaggggaaggatttcctatttaataaatggtgttgagagtactggctagccatatacagaaaattgaaactggaccccttccttacaccttgtataaaagttaactcaagatggattcaatacttaagtat-aaacccaaaactgc--aaaaaccctggaagaaaatctaggcaacaccattcaagacatacacattgggcaaagactttatgatgaaattgcc-aaagcaactgccacaaaagcaaaaattgacaaatgggatctaattaaagggaagaaa
i aotNan1.NW_018496904v1       T 43698 C 0
e otoGar3.GL873550             16816500 5111 -  18854210 I
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=92048.000000
s hg38.chr6_GL000254v2_alt      1050137 21 +   4827813 atctgcacagaaaaagaaact
s panTro5.chr6                 30015779 21 + 175400573 atctgcacagaaaaagaaact
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30246460 21 + 173848474 atctgcacagaaaaagaaact
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6048830 21 +   6154872 atctgcacagaaaaagaaact
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30276970 21 + 172585720 ttctgcacagaaaaagaaact
i rheMac8.chr4                 C 0 I 3
s macFas5.chr4_KE145577_random    99700 21 +    231697 ttctgcacagcaaaagaaatt
i macFas5.chr4_KE145577_random C 0 I 3
s cerAty1.NW_012002535v1          14672 21 -    863181 ttctgcacagaaaaagaaact
i cerAty1.NW_012002535v1       C 0 I 3
s chlSab2.chr17                29197449 21 -  71996105 ttctgcacagaaaaagaaact
i chlSab2.chr17                C 0 I 3
s manLeu1.NW_012101121v1           4732 21 +    273075 ttctgcacagaaaaagaaact
i manLeu1.NW_012101121v1       C 0 I 3
s saiBol1.JH378364                17514 21 +    187130 ttctgcacagcaagagaaact
i saiBol1.JH378364             C 0 C 0
s aotNan1.NW_018496904v1         139098 21 -    383796 ttctgcccagcaaaagaaatt
i aotNan1.NW_018496904v1       C 0 C 0
e otoGar3.GL873550             16816500 5111 -  18854210 I
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I
e nomLeu3.chr1a                74716887 24 + 122973662 I

a score=1355316.000000
s hg38.chr6_GL000254v2_alt      1050158 283 +   4827813 ---atcagagtgaacagacaccctacagaatgggagaaaatttttgca------------atctatctatcttacaaaggtctaatattcagaatctataaagaacttaagcaaatttacatg-----aaaaa-----aacttcattaaaaagtgaacaaaggacatgaagagacatttcacaaaataagacg-tacatgtggccaa-aaaaacatg--aaaaaaagctcaacatcactg---a---ttacagaaatgcaaatcaaaaccacaaatgagataccatctaatgccagtcagaatggcaattatttaaaa
s panTro5.chr6                 30015800 283 + 175400573 ---atcagagtgaacagacaccctacagaatgggagaaaatttttgca------------atctatctatcttacaaaggtctaatattcagaatctataaagaacttaagcaaatttacatg-----aaaaa-----aacttcattaaaaagtgaacaaaggacatgaagagacatttcacaaaataagacg-tacatgtggccaa-aaaaacatg--aaaaaaagctcaacatcactg---a---ttacagaaatgcaaatcaaaaccacaaatgagataccatctaatgccagtcagaatggcaattatttaaaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30246481 283 + 173848474 ---atcagagtgaacagacaccctacagaatgggagaaaatttttgca------------atctatctatcttacaaaggtctaatattcagaatctataaagaacttaagcaaatttacatg-----aaaaa-----aacttcattaaaaagtgaacaaaggacatgaagagacatttcacaaaataagacg-tacatgtggccaa-aaaaacatg--aaaaaaagctcaacatcactg---a---ttacagaaatgcaaatcaaaaccacaaatgagataccatctaatgccagtcagaatggcaattatttaaaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6048851 282 +   6154872 ---atcagagtgaacagacaccctacagaacgggagaaaatttttgca------------atctatctatcttacaaaggtctaatattcagaatctataaagaacttaagcaaatttacatg------aaaa-----aacttcattaaaaagtgaacaaaggacatgaagagacatttcacaaaataagacg-tacatgtggccaa-aaaaacatg--aaaaaaagctcaacatcactg---a---ttacagaaatgcaaatcaaaaccacaaatgagataccatctaatgccagtcagaatggcaattatttaaaa
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74716911 292 + 122973662 ---atcagagcaaacagacatcctacagagtgggagaaagtttgtgca------------atctatccatctgacaaaggtctaatattcagaatctacaaagaacttaagcaaatttacatgaaaataaaac-----aacttcattaaaaagtgggcaaaggacatgaacagaaacttctaaaaagaagacg-tgcatgtggccaacaaaaatatg--aaaaaaagctcaacatcactgatca---ttacagaaatgcaaatcaaaaccacaaatgagataccatctcatgccagtcagaatggcaattattaaaaa
i nomLeu3.chr1a                I 24 C 0
s rheMac8.chr4                 30276994 283 + 172585720 ---atcagagcaaacagacaccctacagaatgggagaaaatttttgca------------atctatctaccttacaaagttctaatattcagaatctacaaagaacttaagcaaatttgcatg-----aaaaa-----aacttcattcaaaagtggacaaaggagatgaagagacatttcacaaaataagacttaacatgtggccaa-aaaaatatg--aaaaaaa-ctcaacatcactg---a---ttacagaaatgcaaatcaaaaccacaaatgagatactatctaatgccagtcagaatggcaattatttaaaa
i rheMac8.chr4                 I 3 C 0
s macFas5.chr4_KE145577_random    99724 285 +    231697 ---atcagagcaaacagacatcctaccgaacgggagaaaatttgtgca------------atctactcatctgacaaaggtctaatattcagaatctacaaagaacttaagcaaatttacatg-----aaaaaaa--caacttcattaaaaagtggacaaaggatttgaacagacacttctcaagatg------tacatgcgtccaacaaaaatatg--aaaaaaaggtcaacatcacggatca---ttacagaattgcaaatcaaaaccacaaatgagataccatctcatgccagtcagaatggcaattattaaaaa
i macFas5.chr4_KE145577_random I 3 C 0
s cerAty1.NW_012002535v1          14696 282 -    863181 ---atcagagcaaacagacaccctacagaatgggagaaaatttttgca------------atctatctatcttacaaagttctaatattcagaatctacaaagaacttaagcaaatttgcgtg-----aaaaa-----aacttcattcaaaagtggacaaaggagatgaagagacatttcacaaaataagact-tacatgtggccaa-aaaaatatg--aaacaaa-ctcaacatcactg---a---ttacagaagtgcaaatcaaaaccacaaatgagatactatctaatgccagtcagaatggcaattttttaaaa
i cerAty1.NW_012002535v1       I 3 C 0
s chlSab2.chr17                29197473 278 -  71996105 ---atcagag----cagacaccatacagaatgggagaaaatttttgca------------atctatctatcttacaaagttctaatattcagaatctacaaaggacttaagcaaatttacatg-----aaaaa-----aacttcattaaaaagtggacgaaggacatgaagagacatttcacaaaataagaca-tacatgtggccaa-aaaaatatg--aaaaaaa-ctcaacatcactg---a---ttacagaaatgcaaatcaaaaccacaaatgagatactatctaatgccagtcagaatggcaattatttaaaa
i chlSab2.chr17                I 3 C 0
s manLeu1.NW_012101121v1           4756 275 +    273075 ---atcagagcaaacagacaccctacagaatgggagaa-------gca------------atctatctatcttacaaagttctaatattcagaatctacaaagaacttaagcaaatttgcatg-----aaaaa-----aacttcattcaaaagtggacaaaggagatgaagagacatttcacaaaataagaca-tacatgtggccaa-aaaaatatg--aaaaaat-ctcaacatcactg---a---ttacagaaatgcaaatcaaaaccacaaatgagatactatctaatgccagtcagaatggcaattttttaaaa
i manLeu1.NW_012101121v1       I 3 C 0
s saiBol1.JH378364                17535 302 +    187130 atcaccagagtgaacagacatcctacagaatgggagaaaaaattttcaacatacctttctacatatccatctgacaaaggtctaatattcagaatctacaaataacttagccaaatttacatg-----aaaaaaacccaactttatcgaaaagtagaaaatgtacatgaacagacacttctcaaaagaggaca-tacatgcagccaacaaacatatt--tttaaaagctgaacatcacta---a----tagagaaatgcaaatcaaaatcac-aatgagataccatctcacgccagtcagaatggcgattactaaaaa
i saiBol1.JH378364             C 0 C 0
s aotNan1.NW_018496904v1         139119 291 -    383796 atcatcagagcaaacaaacatcctacagaatgggagaaaatttttgca------------atctattcatctgacaaaggtctaatattcagaatcagcaaataatttaagcaaatttacata-----aaaaa----caacttcattaaaaagtggacaaaggatgtgaacagatacttctcaaaagaagaca-tacatgaggccaa-aaacataataaaaaaaaagctcaacatcacta---atcattggaaaaatgtaaatcaaaaccac-catgagatgccatctcatgccagtcagaatggcaattatttaaaa
i aotNan1.NW_018496904v1       C 0 I 43712
e otoGar3.GL873550             16816500 5111 -  18854210 I
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=390884.000000
s hg38.chr6_GL000254v2_alt      1050441 84 +   4827813 ctacataaacaccagatgctggcgaggttgtggagaaataggaaggcttttacactgttgctggaaatgtaaattggttgaacc
s panTro5.chr6                 30016083 84 + 175400573 ctacataaacaccagatgctggcggggttgtggagaaataggaaggcttttacactgttgctggaaatgtaaattggttcaacc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30246764 84 + 173848474 ctacataaacaccagatgctggcgaggttgtggagaaataggaaggcttttacactgttgctggaaatgtaaattggttcaacc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6049133 84 +   6154872 ctacataaacaccagatgctggcgaggttgtggagaaataggaaggcttttacactgttgctggaaatgtaaattggttgaacc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74717203 83 + 122973662 gccaagaaacaacagatgctggcgaggttgcagagaaataagaaggcttttacatggttg-tggaaaagtaaatcagttaatcc
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30277277 83 + 172585720 gtaaataaacaccagatg-tggcgaggttgtggaggaataggaaggcttttacactgttggtggaaatgtaaattggttcaacc
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   100009 84 +    231697 gtcaagaaacaacagatgctggcaaggttgcagagaaatagaaatgcttttacactgttggaggaaaagtaactcagttaatcc
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          14978 83 -    863181 gtaaataaacaccagatg-tggcgaggttgtggaggaataggaaggcttttacactgttggtggaaatgtaaattggttcaacc
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29197751 83 -  71996105 gtaaataaacaccagatg-tggcgaggttgtggaggaataggaaggcttttacactgttggtggaaatgtaaattggttcaacc
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           5031 83 +    273075 gtaaataaacaccagatg-tggcgaggttgtggaggaataggaaggcttttacactgttggtggaaatgtaaattggttcaacc
i manLeu1.NW_012101121v1       C 0 C 0
s saiBol1.JH378364                17837 84 +    187130 gtcaagaaacaacagatgctgccaaagttgcagagaaatagaaatgcttttacactgttggtagaaatgtaaattggctcaacc
i saiBol1.JH378364             C 0 C 0
s aotNan1.NW_018496904v1         183122 84 -    383796 gtcaagaaacaacagatgctggggaagttgaggagaaataggggtgcttttacactgttgatggaaatgtaaattggttcaacc
i aotNan1.NW_018496904v1       I 43712 T 39192
e otoGar3.GL873550             16816500 5111 -  18854210 I
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=3120795.000000
s hg38.chr6_GL000254v2_alt      1050525 617 +   4827813 attgtggaagacagtttggtgattcctcaaagatttagaaccagaaataccatttgacccagcaatcccattacagggtatacatccaaaggaaaataaatcactctactataaagatacatgcatgtgtatgcttattgcagcactatccacaatagcaaagacatggaatcagcccaaatgcccatcaatgatgtactgcattaagaaaatatggtacatatacaccatggaatattatgcagccacaaaaaggaatgagattcagtcttttgc------------------------------agggatatggatgaagctggaagcc---atcctcagcaaactaacacaggaacagaaagccaaacgccacatgttctcacttataattgggagatgagcaatgagaacacatggacacaaggagaggaacatcacacactggtgcctgctgggggagggcagtggtgggaggagtattaggaaaaaatagctaatgcatgccagggttaatacataggtgatggtttgataggtgcagcaaaccaccatggcacacatttacctatgtaacaaacctgcgcatcctgcacacataacctggaacttaaaattaaattaaattaaa----------agaCAAGCTAAAAGGGTTA
s panTro5.chr6                 30016167 622 + 175400573 attgtggaagacagtttggtgattcctcaaagatttagaaccagaaataccatttgacccagcaatcccattacagggtatacatccagaggaaaataaatcactctattataaagatacatgcatgtgtatgcttattgcagcactatccacaatagcaaagacatggaatcagcccaaatgcccatcagtgatgtactgcattaagaaaatatggtacatatacaccatggaatattatgcagccacaaaaaggaatgagattcagtcctttgc------------------------------aggaatatggatgaagctggaagcc---atcctcagcaaactaacacaggaacagaaagccaaacaccacatgttctcacttataattgggagctgagcaatgagaacacgtggacacagggagaggaacatcacacactggtgcctgctgggggagggcagtggtgggaggagtattaggaaaaaatagctaatgcatgccagggttaatacataggtgatggtttgataggtgcagcaaaccaccatggcacacatttacctatgtaacaaacctgcgcatcctgcacacataacctggaacttaaaattaaattaaaTTAAATTAA-----AAGACAAGCTAAAAGGGTTA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30246848 622 + 173848474 attgtggaagacagtttggtgattcctcaaagatttagaaccagaaataccatttgacccagcaatcccattacagggtatacatccaaaggaaaataaatcactctattataaagatacatgcatgtgtatgcttattgcagcactatccacaatagcaaagacatggaatcagcccaaatgcccatcaatgatgtactgcattaagaaaatatggtacatatacaccatggaatattatgcagccacaaaaaggaatgagattcagtcctttgc------------------------------aggaatatggatgaagctggaagcc---atcctcagcaaactaacacaggaacagaaagccaaacaccacatgttctcacttataattgggagctgagcaatgagaacacgtggacacagggagaggaacatcacacactggtgcctgctgggggagggcagtggtgggaggagtattaggaaaaaatagctaatgcatgccagggttaatacataggtgatggtttgataggtggagcaaaccaccatggcacacatttacctatgtaacaaacctgcgcatcctgcacacataacctggaacttaaaattaaattaaaTTAAATTAA-----AAGACAAGCTAAAAGGGTTA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6049217 622 +   6154872 attgtggaagacagtttggtgattcctcaaagatttagaaccagaaataccatttgacccagcaatcccgttacagggtatacatccaaaggaaaataaatcactctattataaagatacatgcatgtgtatgcttattgcagcactattcacaatagcaaagacatggaatcagcccaaatgcccatcagtgatgtactgcattaagaaaatattgtacatatacaccatggaatattatgcagccacaaaaaggaatgagattcagtcctttgc------------------------------agggatatggatgaagctggaagcc---atcctcagcaaactaacacaggaacagaaagtcaaacaccacatgttctcacttataattgggagctgagcaatgaaaacacatggacacaaggagaggaacatcacacactggtgcctgctgggggagggcagtggtgggaggagtattaggaaaaaatagctaatgcatgccagggttaatacataggtgatggtttgataggtgcagcaaaccaccatggcacacatttacctatgtaacaaagctgcgcatcctgcacacataacctggaacttaaaattaaattaaaTTAAATTAA-----AAGACAAGCTAAAAGGGTTA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74717286 619 + 122973662 attgtggaagacagtgtggtgattcctcaaagatttagaaccagaaataccattcgacccagcagtcccattacagggcttatacccagaggaatataaatcattctattataaaggtatatgcatgtttacattcattgcagcactattcacaatagcaaagacatggaatcaacccaaatgcccatcaatgatggactggataaagaaaatatggtatatatacaccacagaatattatgcagccataaaaaggaatgagatcaagtcctttgc------------------------------agagatatggattaagctggaagccattatcctcagaaaactaacacaggaacagaaaaccaaacaccacatgtcctcatttataattgggaactgagcaatgagaacacatggacctaggaagaggaacaacatacactggggcctgttgggggagggtggtggtggggggatcatta-gcaaaaatagctaatgcatgccagggttaatacctaggtgatgggttgataggtgcggcaaaccaccacggcacacgtttacctatgtaacaaacctgcacatcctgcacatgtaccctgaaacttaaaattaaattaaattaaa----------agaCAAGCTTAAAGAGTTA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30277360 614 + 172585720 attgtggaagacaatttggtgattcctcaaagatttagaaccagaaacaccatttcacccagcagtcccattacagggtatataaccaaaggagcataaaccattctattataaagatacatgcatgtgtatgttcattgcagcactattcacaatagcaaagacatgaaatcaacccaaatgcccatcaatgatggactgcatcaagaaaatatggtacgtatttaccatggaatattatgcagtcatgaaaaggaattagatcaagtcctttgc------------------------------aggggtatggatgaagccaaaagccattatcctcagccaactaacacaggaacagaaagccaaacaccacatgttcttacttataattgggagctgagcaatgagaacacatggacacagggagaggaacatcacacactggggcctgctgggggagggcagtggtaggaggagcatta-ggaaaaatagctaatgcatgccaggattaatacatacgtaatgggttgataggtgcagcaaaccacaatagcacacatttagctatgtaacaagcctgcacatcctgcacatgtaccctggaact----------ttaaattaaattaa-----aagaCAAGCTAAAGGCATTA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   100093 614 +    231697 attgtggaagacagtgtggcaattcctcaaagatttagaaccggaaataccatttgacccagcaatcccaatacaagatatatacccaaaggaatataaatcattctattacaaagttatatgcatgtttacattcattgcagcactattcacaatagcaaaaacatggaacctacccaaatgcccatcaatgatgaacttgataaagaaaatatggtacatatacaccatagaatatcatgcagccacaaaaaggaatgagatcaagtccttttc------------------------------agtgatatggatgaagctggaagccattatcctcagcatactaacacaggaacagaaaaccaaacaccacatgttctcatttataattgggaactgagcaatgagaacacatggacacagggagatgaacaatacacactggggcctcttgggagagggcagtggttgggggatcatta-gcaaaaatagctaatgcatgccagggttaatacctaggtgatgagttgataggtgcagcaaaccaccatggtacatatttacctatgtaacaaacctgcacatcctgcacatgtatcctggaact----------taaaattaaattaa-----aagaCAAGCTTAAAGAGTTA
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          15061 623 -    863181 attgtggaagacaatttggtgattcctcaaagatttagaaccagaaacaccatttcacccagcaatcccattacagggtatataaccaaaggagaataaaccattctattataaagatacatgcatatgtatgttcattgcagcactattcacaacagcaaagacatgaaatcagcccaaatgcccatcaatgatggactgcataaagaaaatatggtacgtatttaccatggaatattatgcagtcatgaaaaggaattagatcaagtcctttgc------------------------------aggggtatggatgaagccaaaatccattatcctcagccaactaacacaggaacagaaagccaaacaccacatgttcttacttataattgggagctgagcaatgagaacacatggacacagggagaggaacatcacacactggggcctgctgggggagggcagtggtaggaggagcatta-ggaaaaatagctaatgcatgccaggattaatacatacgtaatgggttgataggtgcagcaaaccaccatagcacacatttagctatgtaacaagcctgcacatcctgcacatgtaccctggaactt-aaattaaattaaattaaattaa-----aAGACAAGCTAAAGGCATTA
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29197834 628 -  71996105 attgtggaagacaatttggtgattcctcagagatttagaaccagaaataccattttacccagcaatcccattacagggtatataaccaaaggagaataaaccattctattataaagatacatgcatgtgtatgttcattgcagcactattcacaacagcaaagacatgaaatcaacccaaatgcccatcaatgatggactgcataaaaaaaatatggtatgtatataccatggaatattatgcagtcatgaaaaggaattagatcaagtcctttgc------------------------------aggggtatggatgaagccaaaagccattatcctcagcaaactaacacaggaacagaaagccaaacaccacatgttctcacttataattgggagctgagcaatgagaacacatggacacagggagaggaacatcacacactggggcctgctgggggagggcagtggtaggaggagcatta-ggaaaaatagctaatgcatgccaggattaatacatatgtaatgggttgataggtgcagcaaaccagcatagcacacatttagctatgtaacaagcctgcacatcctgcacaggtaccctggaactt-aaattaaattaaattaaattaaattacaagacaagctaaaggcatta
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           5114 623 +    273075 attgtggaagacaatttggtgattcctcaaagatttagaaccagaaacaccatttcacccagcaatcccattacagggtatataaccaaaggagaataaaccattctattataaagatacatgcatatgtatgttcattgcagcactattcacaacagcaaagacatgaaatcagcccaaatgcccatcaatgatggactgcataaagaaaatatggtacgtatttaccatggaatattatgcagtcatgaaaaggaattagatcaagtcctttgc------------------------------aggggtatggatgaagccaaaatccattatcctcagccaactaacacaggaacagaaagccaaacaccacatgttcttacttataattgggagctgagcaatgagaacacatggacacagggagaggaacatcacacactggggcctgctgggggagggcagtggtaggaggagcatta-ggaaaaatagctaatgcatgccaggattaatacatacgtaatgggttgataggtgcagcaaaccaccatagcacacatttagctatgtaacaagcctgcacatcctgcacatgtaccctggaactt-aaattaaattaaattaaattaa-----aAGACAAGCTAAAGGCATTA
i manLeu1.NW_012101121v1       C 0 C 0
s saiBol1.JH378364                17921 619 +    187130 attgtggaagacagggtggcaattcctcaaagatttagaaccagaaataccatttgacctaacaatcccattacagggtatatacccaaaggaatagaaatcattctattataaagatagatgcatgtgtatgttaattgcagcactattcacaatagcaaagacatgaaatcaacccaaatgctcaacaatgatggactggataaataaaatatggtacatctacaccatggaatattatgaagccataaaaaggaatgagatcaagtcctttgc------------------------------aaggatatagatgaaactggaagccattttccttagcgaactaacacaggaacagaaaaccatacaccacatgttgtcatgtataattgagagctgagcaatgagaacacagggacacagggagaggaacaacacacactggggcctgttgtgggagggtgggggtggggggagcatta-cgaaaaatacctaatgcatgccaggcttcatacctaggtgatgggttgataggtgcagcaaaccaacatggcacacgtttacctatgtaacaaacctgcacatcctgcatgtgtaccctagaacttaaaatg-----aaataaaattaa-----aagaCAAGGTTAAAACATTA
i saiBol1.JH378364             C 0 I 1181
s aotNan1.NW_018496904v1         144014 646 -    383796 attgtagaagagagtatggtgattcctcaaagatttagaaccagaaataccatttgacccagtcatcctattacagggtatatacccaatggaatataaatcattctattataaagatacatgcatgcgtatgttcattacagcactattcacaatagcaaagacatggaatc-acccaaatgcctatcaatggtgaactggataaagaaaagatgatacatataccccatagaatattatgtagccataaaaataaatgaaatcaagtcctttgcttgatttcatttctttttatggctgcataaaaagatatggatgaagctctaagccattatcctcagcaaattaacaca-gaacagaaaaccaaacactatatgttctcacatataattgagagctgagcaatgagaacacatgggcaagaggaaaggaacaatacacactggggcctgttgagggtgagcagtggtggtcgaagcatta-ggataaacagctaatgcatgccggggttaatacctagatgatgggttgacaggtgcagcaaaccaccatggcacacgtttacttatgtaacaaatctgcacatccagcacctgtaccctggagcttaaaatt------aattaaattaa-----aagaCAAGCTTAAAGCATTT
i aotNan1.NW_018496904v1       T 39192 C 0
e otoGar3.GL873550             16816500 5111 -  18854210 I
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=1143291.000000
s hg38.chr6_GL000254v2_alt      1051142 279 +   4827813 ACGAAAAATAATTAGAT--AAAAAA--A---TTTTGATTTTCAAAATCCTGAAACAAGAGTTTTAAATTtgcttttaatatatattcaaatcctttaatactgttcccttccagagatgctgcttaatttcctctcttgagtgtggctgggacttaatgatgcatttctgatatggtctggctctgagttcccaccaaattctcatcttgaattgtcatgcaaattgtaatccctatgtatcgggggagggacctcctgggaggtgattggatcacgggtatggta
s panTro5.chr6                 30016789 278 + 175400573 ATGAAAAATAATTAGAT--AAAAAA------TTTTGATTTTCAAAATCCTGAAACAAGAGTTTTAATTTtgcttttaatatatattcaaatcctttaatactgttcccttccagagatgctgcttaatttcctctcttgagtgtggcttggacttaatgatgcatttctgatatggtctggctctgagttcccacccaattctcatcttgaattgtcatgcaaattgtaatccctatgtatgggggcagggacctcctgggaggtgattggatcacaggtatggta
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30247470 278 + 173848474 ATGAAAAATAATTAGAT--AAAAAA------TTTTGATTTTCAAAATCCTGAAACAAGAGTTTTAATTTtgcttttaatatatattcaaatcctttaatactgttgccttccagagatgctgcttaatttcctctcttgagtgtggcttggacttaatgatgcatttctgatatggtctggctctgagttcccacccaattctcatcttgaattgtcatgcaaattgtaatccctatgtatgggggcagggacctcctgggaggtgattggatcacgggtatggta
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6049839 279 +   6154872 ATGAAAAATAATTAGAT--AAGAAA--A---TTTTGATTTTCAAAATCCTGAAACAAGAGTTTTAATTTtgcttttaatatatattcaaatcttttaatactgttcccttccagagatgctgcttaatttcctctcttgagtgtggcttggacttaatgatgcatttctgatatggtctggctctgagttcccacccaattctcatcttgaattgtcatgcaaattgtaatccctatgtatggggggagggatctcctgggaggtgattggatcacaggtttggta
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74717905 281 + 122973662 ATGAAAAATAATTAGAT--AAAAGAAGA---CTTTGATTTTCAAAAACCTGAAACAATAGTTATAATTTTGCAtttaacatatattcaaatcctttaatactgttcccttccagaggtgcagcttaattccctctcttgagtgtggcttggacttaatgaggcacttctgatatggcctggttctgtgttcccacccaaatctcatcttgaattgtcatgtgaattgtaatccctacctattgggggagggacctcatgggaggtgattggatcatggggacagca
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30277974 278 + 172585720 ACG-AAAATAATTAGAT--AAAAAA-AA---CTTTGATTTTCAAAATCCTGAAACAAGTGTTTTAATTTTgctttaaacatatattaaaatcctttaatac-gttccattccagaggtgctgcttaatttcctctcttgagtgtggcttggacataatgaggcacttctgatatggtctggctcggtgttcccaaccaattctcatcttgaattgtcatgcaaattgtaatccctgtgtattgggggaggggcctcatgggagatgattggatcatgggtatggta
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   100707 281 +    231697 ATGAAAAATAATTAAAT--AAAAGA-AG--CCTTTGATTTTGAAAAACCAGAAACAATAGTTTTAATTTtgcttttaacatatattcaaatcctttgatactgttcccttccagagatgcagcttaattccctcgcttgagtgtggcttggacttaatgaggcacttctgatgtgtactggctctgtgttctcacccaaatctcatcctgaattgtcattcaaattgtactccctacctgttgggggagggaccacacgggaggtgactggatcatggggacagtt
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          15684 279 -    863181 AGG-AAAATAATTAGAT--AAAAAA-AA---CTTTGATTTTCAAAATCCTGAAACAAGTGTTTTAATTTTgctttaaacatatattcaaatcctttaatactattccattccagaggtgctgcttaatttcctctcttgagtgtggcttggacttaatgaggcacttctgatatggcctggctctgtgttcccacccaattctcatcttgaattgtcatgctaattataatccctgtgtatcgggggaggggcctcatgggaggtgattggatcatgggtatggta
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29198462 281 -  71996105 aca-aaaaTAATTAGATTAAAAAAA-AA---CTTTGATTTTCAAAATCCTGAAACAAGTGTTTTAATTTTgctttaaacatatattcaaatcctttaatactgttcccttccagaggtgctgcttaatttcctctcttgagtgtggcttggagttaatgatgcacttctgatatggtctggctctgtgttcccacccaattctcatcttgaattgtcatgcaaattgtaatccctgtgtattgggggagaggcctcatgggagatgattggatcatgggtatggta
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           5737 279 +    273075 AGG-AAAATAATTAGAT--AAAAAA-AA---CTTTGATTTTCAAAATCCTGAAACAAGTGTTTTAATTTTgctttaaacatatattcaaatcctttaatactattccattccagaggtgctgcttaatttcctctcttgagtgtggcttggacttaatgaggcacttctgatatggcctggctctgtgttcccacccaattctcatcttgaattgtcatgctaattataatccctgtgtatcgggggaggggcctcatgggaggtgattggatcatgggtatggta
i manLeu1.NW_012101121v1       C 0 C 0
s aotNan1.NW_018496904v1         144660 281 -    383796 ATGAAAAACAATTAGAT--AATAAA-AAAGCCTTTGAGTTACAAAATCTTGAAACGATAGTTTTAATTTtgcttttaacatacatgcaaatcctttaatactggtcccttccagaggtgcagcttaattccctctcttgattgtggcttggatttaatgatgaacttctgatacggcctggctctgtgttcccacacaaatctcatcttgaattgtcttatgaattgtaat-ctgacatattggggt-gggaccacatcggaggtgactggatcatggggacggtt
i aotNan1.NW_018496904v1       C 0 C 0
e saiBol1.JH378364                18540 1181 +    187130 I
e otoGar3.GL873550             16816500 5111 -  18854210 I
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=108103.000000
s hg38.chr6_GL000254v2_alt      1051421 23 +   4827813 cccccatgctgctcttatgatgc
s panTro5.chr6                 30017067 23 + 175400573 cccccatgctgcttttatgatgc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30247748 23 + 173848474 cccccatgctgctcttatgatgc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6050118 23 +   6154872 cccccatgctgctcttatgatgg
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74718186 23 + 122973662 cccccatgctgttctggtgatac
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30278252 23 + 172585720 actccatgctgttcttatgatac
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   100988 23 +    231697 cccccatgctgttctcatgatac
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          15963 23 -    863181 cctccatgctgttcttatgatac
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29198743 23 -  71996105 cctccatgctgttcttatgagac
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           6016 23 +    273075 cctccatgctgttcttatgatac
i manLeu1.NW_012101121v1       C 0 C 0
s saiBol1.JH378364                19721 23 +    187130 cccccatggtgttctaatgatgg
i saiBol1.JH378364             I 1181 C 0
s aotNan1.NW_018496904v1         144941 23 -    383796 cccctatgctgttctaatgatag
i aotNan1.NW_018496904v1       C 0 T 51636
e otoGar3.GL873550             16816500 5111 -  18854210 I
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=377195.000000
s hg38.chr6_GL000254v2_alt      1051444 79 +   4827813 tgagggaattctcatgagatctgatggttttatgaggtatttttccccacttcgatctgcaattctctctcctgccacc
s panTro5.chr6                 30017090 79 + 175400573 tgagggaattctcatgagatctgatggttttatgaggtatttttccccacttcgatctgcaattctctctcctgccacc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30247771 79 + 173848474 tgagggaattctcatgagatctgatggttttatgaggtatttttccccacttcgatctgcaattctctctcctgccacc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6050141 79 +   6154872 tgagggaattctcatgagatctgatggttttatgaggtatttttccccacttcgatctgcaattctctctcctgccacc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74718209 79 + 122973662 tgagggaattctcatgagatctgatggttttataaggggcttttccctgcttcattctgcatttctctctcctgccacc
i nomLeu3.chr1a                C 0 I 871
s rheMac8.chr4                 30278275 79 + 172585720 tgagagaattctcatgagatctgatggtttcatgaggggcttttccccatttcgatctgcattcctctctcctgccacc
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   101011 79 +    231697 tgagggaattctcatgagatgtgatggttctataagtggcatttccctgcttcattctgcatttctctctcctgccacc
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          15986 79 -    863181 tgagataattctcatgagatctgagggtttcatgaggggcttttccccatttcgatctgcattcctctctcctgccacc
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29198766 79 -  71996105 tgagagatttctcctaagatctgatggtttcatgaagggcttttccccatttcgatctgcattcctctctcctgccacc
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           6039 79 +    273075 tgagataattctcatgagatctgagggtttcatgaggggcttttccccatttcgatctgcattcctctctcctgccacc
i manLeu1.NW_012101121v1       C 0 C 0
s saiBol1.JH378364                19744 75 +    187130 tgagtgaattctcatgagatttgatggttttataagggctt----tccccttcactctgcatttccctctcctaccacc
i saiBol1.JH378364             C 0 C 0
s aotNan1.NW_018496904v1          93328 75 -    383796 tgagtgaattctcatgagatctgatggttttataaggggtt----cccctttcactctgcatttctctctcctactacc
i aotNan1.NW_018496904v1       T 51636 C 0
e otoGar3.GL873550             16816500 5111 -  18854210 I
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=18273.000000
s hg38.chr6_GL000254v2_alt      1051523 7 +   4827813 atgtgaa
s panTro5.chr6                 30017169 7 + 175400573 atgtgaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30247850 7 + 173848474 atgtgaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6050220 7 +   6154872 atgtgaa
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74719159 7 + 122973662 atgtgaa
i nomLeu3.chr1a                I 871 C 0
s rheMac8.chr4                 30278354 7 + 172585720 atgtgaa
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   101090 7 +    231697 atgtgaa
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          16065 4 -    863181 atgt---
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29198845 4 -  71996105 acgt---
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           6118 4 +    273075 atgt---
i manLeu1.NW_012101121v1       C 0 C 0
s saiBol1.JH378364                19819 7 +    187130 acgtgaa
i saiBol1.JH378364             C 0 I 62244
s aotNan1.NW_018496904v1          93403 7 -    383796 acgtgaa
i aotNan1.NW_018496904v1       C 0 C 0
e otoGar3.GL873550             16816500 5111 -  18854210 I
e cebCap1.NW_016107755v1         353382 889 -   1771730 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=995935.000000
s hg38.chr6_GL000254v2_alt      1051530 166 +   4827813 gaaggacgtgtttgcctccacttctgccatgattgtaagtttcatggggcagccttctcagcaatgcagaactatgagtcaattaaacctctttcctttataaattacccagtctcagg--tatttctttatagcaatgtgagaacggactaatacaacttctaact-------------g
s panTro5.chr6                 30017176 166 + 175400573 gaaggacgtgtttgcctccacttctgccatgattgtaagtttcatggggcagccttctcagcaatgcagaactatgagtcaattaaacctctttcctttataaattacccagtctcagg--tatttctttatagcaatgtgagaacggactaatacaacttctaact-------------g
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30247857 166 + 173848474 gaaggacgtgcttgcctccacttctgccatgattgtaagtttcatggggcagccttctcagcaatgcagaactatgagtcaattaaacctctttcctttataaattacccagtctcagg--tatttctttatagcaatgtgagaacagactaatacaacttctaact-------------g
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6050227 166 +   6154872 gaaggacctgtttgcctccacttctgccatgattgtaagtttcatggggcagccttctcagcaacgcagaactatgagtcaattaaacctctttcctttataaattacccagtctcagg--tatttctttatagcaatgtgagaacggactaatacaacttctaact-------------g
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74719166 179 + 122973662 gaaggatgtgtttgcttccacttctgccgtgactgtaagtttcttggggcagcctcctcagccacacagaactgtgagtcaattaaacctctttcctttataaattacccagtctcagg--tatttctttatagcagtgtgagaatggactaaaacaACTTCTAActtctaacaacataga
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30278361 165 + 172585720 gaaggacgtgtttgcttccacttctgccatggttgtaagtttcctggggca-cctcctcagccatgcagaactgtgagtcaattaaacctctttcctttataaattacccagtctcagg--tatttctttatagcagtgtgagaagaaacaaatacaacttcaaact-------------g
i rheMac8.chr4                 C 0 I 5
s macFas5.chr4_KE145577_random   101097 166 +    231697 gaaggacatgtttgcttccaattctgccatgactctaagtttcctggggcaggctcctcagcaatgcagaactgtgagtcagttaaatctctttcctttataaatcacccaatctcagg--tatttctttatagcagtgtgagaatggactaatacaActtctaact-------------t
i macFas5.chr4_KE145577_random C 0 I 5
s cerAty1.NW_012002535v1          16069 166 -    863181 gaaggacgtgtttgcttccacttctgccatggttgtaagtttcctggggcagcgtcctcagccatgcagaactgtgagtcaattaaacctctttcctttataaattacccagtctcagg--tatttctttatagcagtgtgagaacgaacaaatacaacttcaaact-------------g
i cerAty1.NW_012002535v1       C 0 I 5
s chlSab2.chr17                29198849 166 -  71996105 gaaggacgtgtttgcttccacttctgccatggttgtaagtttcatggggcagcctcctcagccatgcagaagtgtgagtcaattaaacccctttcctttataaattacccagtctcagg--tatttctttatagcagtgtgagaacgaacaaatacaacttcaaact-------------g
i chlSab2.chr17                C 0 I 5
s manLeu1.NW_012101121v1           6122 166 +    273075 gaaggacgtgtttgcttccacttctgccatggttgtaagtttcctggggcagcgtcctcagccatgcagaactgtgagtcaattaaacctctttcctttataaattacccagtctcagg--tatttctttatagcagtgtgagaacgaacaaatacaACTTCAAACT-------------G
i manLeu1.NW_012101121v1       C 0 N 0
s saiBol1.JH378364                82070 167 +    187130 gaaggatgggtttgcttccacttctgccatgattgtaagtttgctggggca-ccttctcagccatgcagaactgtgagtcaattaaaaccctttcctttataaacaactcagtcttagatctatttctttacagcactgtgagaaccagctaatacaActtctaaca-------------g
i saiBol1.JH378364             I 62244 I 5
s cebCap1.NW_016107755v1         354271 155 -   1771730 gaaggatgtatttgcttccacttctgccatgattataagtttcctgggacagccttctcagccatgcagaactgtgagtcgattaaacctctttcttttataaataacccag-------------tctttatagcagtgtgagaatgagctaatacaActtctaaca-------------g
i cebCap1.NW_016107755v1       I 889 I 1
s aotNan1.NW_018496904v1          93410 162 -    383796 ---ggatgtgtttgcttccacttctgccatgattgtaagtttcctggggcagccttctcagccatgcagaactgtgagtcaattaaacctc-ttcctttataaataacctagtctcagg--tatttctttatagcactgtgagaacaagctaatacaActtctaaca-------------g
i aotNan1.NW_018496904v1       C 0 I 5
e otoGar3.GL873550             16816500 5111 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=639030.000000
s hg38.chr6_GL000254v2_alt      1051696 126 +   4827813 gtaatgctgacataagagtttgtgactctgggtgtagaacataaaactcactgcagcctcccc--cttctctctcaatgtctct------ggaatcatgagctctgggggaagccacctgctgtgccataagca
s panTro5.chr6                 30017342 124 + 175400573 gtaatgctgacataacagtttgtgactctgggtgtagaacataaaactcactgc--cctcccc--cttctctctcaatgtctct------gggatcatgagctctgggggaagccacctgctgtgccataagca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30248023 126 + 173848474 gtaatgctgacataacagtttgtgactctgggtgtagaacataaaactcactgcagcctcccc--cttctctctcaatgtctct------gggatcatgagctctgggggaagccacctgctgtgccataagca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6050393 126 +   6154872 gtaatgctgacataacagtttgtgactctgggtgtagaacataaaactcactgcagcctcccc--cttctctgtcaatgtctct------gggatcatgagctctgggggaagccacctgctgtgccataagca
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74719345 126 + 122973662 ataatgctgacataacagtttgtgactctgggtgtagaacataaaactcactgcggcttccac--cttctctctctctgtctct------gggatcatgagctctggggaaagccagctgctgtgccacaagca
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30278531 126 + 172585720 gtaatgctgacataatagtttgtgactctgggtgtagaacataaaactcactgcaggctcccc--cttctctctcaaggtctct------gggatcatgagctctgggggaagccacctgctgtgcaataagca
i rheMac8.chr4                 I 5 N 0
s macFas5.chr4_KE145577_random   101268 128 +    231697 ataatgctgacataacagtttgtgactttgtgtgtaaaacataaaactcactgcagcttccac--cttctctctc----tctctatccgcgggaacatgagctctgggggaagccagctgctgtgccaaaagca
i macFas5.chr4_KE145577_random I 5 C 0
s cerAty1.NW_012002535v1          16240 126 -    863181 gtaatgctgacataatagtttgtgactctcggtgtagaacataaaactcactgcaggctcccc--cttctctctcaaggtctct------gggatcatgagctctgggggaagccacctgctgtgcaataagca
i cerAty1.NW_012002535v1       I 5 C 0
s chlSab2.chr17                29199020 126 -  71996105 gtaatgctgacataatagtttgtgactctgggtgtagaacataaaactcactgcaggctcccc--cttctctctcaaggtctct------gggatcatgagctctgggggaagccacctgctgtgcaataagca
i chlSab2.chr17                I 5 C 0
s saiBol1.JH378364                82242 126 +    187130 gtaatgacgacataagagtttctgactccgggtgtagaatacaaaactcactgcggcttctac--tttctctctctctgtctct------gggatcatgagctctggggaaagccagctgctgtgctgtaagct
i saiBol1.JH378364             I 5 C 0
s cebCap1.NW_016107755v1         354427 128 -   1771730 gtaatgctgacataacagtttgtgactccgggtgtagaacccaaaactcactgcatcttccaccttttctctctctctgtctct------gggattgtgagctctgggggaagccagctgctgtcccataagca
i cebCap1.NW_016107755v1       I 1 C 0
s aotNan1.NW_018496904v1          93577 126 -    383796 gtaatgatgacataacagttcgtgactctgggtgtagaatgtaaaactcactgtggcttctac--tttctctctctctctctct------gggatcatgagctctgggggaagccagctgctgtgctataagct
i aotNan1.NW_018496904v1       I 5 C 0
e otoGar3.GL873550             16816500 5111 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=507163.000000
s hg38.chr6_GL000254v2_alt      1051822 102 +   4827813 gccctgaagg--------aaggtccatgtggctgagaactggggccttctgggaacagaaaacaaggaactagggcttttccaacagccatgtgacccatccatgtttca
s panTro5.chr6                 30017466 102 + 175400573 gccctgaagg--------aaggtccatgtggctgagaactggggccttctgggaacagacaacaaggaactagggcttttccaacagccatgtgacccatccatgtttca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30248149 102 + 173848474 gccctgaagg--------aaggtccatgtggctgagaactggggccttctgggaacagacaacaaggaactagggcttttccaacagccatgtgacccatccatgtttca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6050519 102 +   6154872 gccctgaagg--------aagttccatgtggctgagaactggggccttctgggaacagacaacaaggaactagggcttttccaacagccatgtgacccatccatgtttca
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74719471 102 + 122973662 gccctgcagg--------aaggtccatgtggctaagaactgaagccttctgggaacagacaacaaggaactaggccttttccaacagccatgtgactgatccatgtttct
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30404809 108 + 172585720 gccctg-aggcctgagtcaaggtccatgtggctgagaactgaggccttctgggaacagacagcaaggaactaggccttttcc-acagccatgtgactgattcatgtttca
i rheMac8.chr4                 N 0 C 0
s macFas5.chr4_KE145577_random   101396 102 +    231697 gccctgcagg--------aaagtccacgtgactgagaactgaggccttctgggactagataacaaggaactaggccttttccaacagccatgtgactgatctgtctttct
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          16366 108 -    863181 gccctg-aggcctgaggaaaggtccatgtggctgagaactgaggccttctgggaacagacagcaaggagctaggccttttcc-acagccatgtgactgattcatgtttca
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29199146 108 -  71996105 gccctg-aggcctgagtcaaggtccatgtggctgagaactgaggccttctgggaacagacagcaaggaactaggccttttcc-acagccatgtgactgattcatgtttca
i chlSab2.chr17                C 0 C 0
s saiBol1.JH378364                82368 102 +    187130 gctctgcagg--------aaggtccatgtggctaagaactgaggccttctgggaccagacaacaagaaactaggccttttccaacagccatgtgactgagccatgtttca
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         354555 102 -   1771730 gccctgcagg--------aaggtccatgtggccaagaactgagaccttctggaaccagacaacaaggaactaggccttttccaacagccatgtgactgagccatgtttca
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          93703 102 -    383796 gtcttgcaga--------aaggtccatgtggctaagaactgaggacttctgagacaagacaacaagaaactaggccttttccaacagccatgtgactgagccatgtttca
i aotNan1.NW_018496904v1       C 0 C 0
e otoGar3.GL873550             16816500 5111 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1          88807 11861 +    243043 I

a score=1986103.000000
s hg38.chr6_GL000254v2_alt      1051924 356 +   4827813 tgtgaatcctcagtcccagtgaagcactcagatgatgcaggcctaggctgacaactggactgcaaccttgtgagaggccctgagcaagaagcactcagggaaacctctcctggattcctgaccattggaacctgcgggagatgatgaatatttgccattttgagctgctaagttttacataatttgttatgcaatagtaaataactaacacaTTTTCACAAAAGAGGATGTAGTA------------TTACACATTAATTTGCATTTGCTCTAAATTTATCATTATTATTAATAttattgttattgagacagggtctcgctctgtcgcccaggctggagtgcagtggcatgatcaccatgcactgcag
s panTro5.chr6                 30017568 356 + 175400573 tgtgaatcctcagtcccagtgaagcactcagatgatgcaggcctaggctgacaactggactgcaaccttgtgagaggccctgagcaagaagcactcagggaaaactctcctagattcctgaccattggaacctgcgggagatgatgaatatttgctattttgagctgctaagttttacacaatttgttatgcaatagtaaataactaatacaTTTTCACAAAAGAGGATGTAGTA------------TTACACGTTAATTTGCATTTGCTCTAAATttatcattattattaatattattgttattgagacagggtctcgctctgtcacccaggctgaagtgcagtggcatgatcaccatgcactgcag
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30248251 356 + 173848474 tgtgaatcctcagtcccagtgaagcactcagatgatgcaggcctaggctgacaactggactgcaaccttgtgagaggccctgagcaagaagcactcagggaaaactctcctggattcctgaccattggaacctgcgggagatgatgaatatttgctattttgagctgctaagttttacacaatttgttatgcaatagtaaataactaatacaTTTTCACAAAAGAGGATGTAGTA------------TTACACGTTAATTTGCATTTGCTCTAAATttatcattattattaatattattgttattgagacagggtctcgctctgtcacccaggctgaagtgcagtggcatgatcaccatgcactgcag
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6050621 356 +   6154872 tgtgaatcctcagtcccagtgaagcactcagatgatgcaggcctaggctgacaactggactgcaaccttgtgagaggccctgagcaagaagcactcagggaaacctctcctggattcctgaccattggaacctgtgggagatgatgaatatttgctattttgagctgctaagttttacataatttgttatgcaatagtaaataactaatacaTTTTCACAAAAGAGGATGTAGTA------------TTACACGTTAATTTGCATTTGCTCTAAATTTATCATTATTATTAATAttattgttattgagacagggtcttgctctgtcacccaggctggagtgcagtggcatgatcaccatgcactgcag
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74719573 350 + 122973662 tgtgaatcctcagccccagtgtagccctcagatgatgcagcccttggctgacaactggactgcaacctcgtgagaggccctgaggaggaagtattcagggaaacctttcctgggttcctaaccattggaaactgtgggagatgatgaatatttgttgttttga---gcaaagttttacataatttgttatgcaatagtaaataactaatacaTTTTCACAAGAGAGGATGTATTA------------TTACACGTTAAATTGCATTTGCTCTAAATGTATCATCATCAT---TATTATTAtttttgagacagggtctcactctatcacccaggctggagtgcagtagcatgatcaccatgcactgcag
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30404917 356 + 172585720 tgtgaatcctcagccccagtgaagccctcagacgatgcaggcctaggctgacaactggactgcaacattgtgagaggccctgagccagaagtactcagggaaacctctcctggatccctgaccatcggaaactgtgggagatgatgaatatttgctgttttgagctgctaagttttacataatttgttatgcaatatcaaataactaatataTTTTCATAAAAGAGAATCTATTA------------TTACATGTTAGTTTACATTTGCTCTAAATGTATCATTATTATTCATATTGTTGTTATTTATacagggtctcactctgtcacccaggctggagtgcagtggcatgatcaccatgcattgctg
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   101498 340 +    231697 tgtgaatcctcaaccccagtgaagccctcagatgatgcagccct----tgacaactggactgcaatcttgtgagaggtcctgagccataagcactctgggaaacttctcctggattcctaagcattggaaactgtgggagatgatgaatatttattgttttga---gcttggtgttatataatttgttatgcaaccgtaaatacacaatacaTTTTCACAAGACAGGATGTATTA------------TTACACGTTAAATTGCATTTGCTCCAAATGTATCATCATCATCATTA---ttg------agacaaggtcacactctgtaacccagtctggaatgtggtggcatgatcaccatgcactgcag
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         100668 343 +    243043 tgtgaatcctcaaccccagtgaagccctcagatgatgcagcccttgactgacaactggactgcaatcttgtgagaggtcctaagccagaagcactctgggaaacttctcctggattcttaaccattggaaactgtgggagatgatgaatatttgtttttttga---gctaagtgttacataattcattatgcaatcataaat----aaTACATTTTCACAAGAGAGGATGTATTA------------TTACATGTTAAATTGCATTTGCGCTAAATGTATCATCATTATCAttatttttg------agacaaggtctcactctgtaagccaggctggagtgtggtggcatgatcaccatgcactgcag
i macNem1.NW_012013156v1       I 11861 C 0
s cerAty1.NW_012002535v1          16474 355 -    863181 tgtgaatcctcag-cccagtgaagccctcagatgatgcaggcctaggctgacaactggactgcaaccttgtgagaggccctgagccagaagcactcagggaaacctctcctggatccctgaccgtcggaaactgtgggagatgatgaatatttgctgttctgagctgctaagttttacataatttgttatgcaatagtaaataactaacacaTTTTCACAAAAGAGAATATATTA------------TTACATGTTAGTTTGCATTTGCTCTAAATGtatcattattattaatattattgttattTATacagggtctcactctgtcacccaggctggagtgcagtggcatgatcaccatgcactgctg
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29199254 355 -  71996105 -ttgaatcctcagccccagtgaagccctcagatgatgcaggcctaggctgacaaccggactgcaaccttgtgagaggccctgagccagaagcactcagggaaacctctcctggatccctgaccatcggaaactgtgggagatgatgaatatttgctgttttgagctgctaagttttacataatttgttatgcaatagtaaataactaacgcaTTTTCACAAAAGAGAATCTATTA------------TTACATGTTAGTTTGCATTTGCTCTAAATttatcattattattaatattattgttattTATacggggtctcactctgtcacccaggctggagtggaatggcatgatcaccatgcactgctg
i chlSab2.chr17                C 0 C 0
s saiBol1.JH378364                82470 346 +    187130 tatgaatcctcagccccagggaaacactcagatgatgcagcccttgactgacaactggactacagccttgtgagaggatctgagccataagcactcagggaaacctctcctagattccttaccattggaaactgtgggagatgatgaatatttgttgttttgagctgctaaattttacatatattgttatgcaatagtaaataactg----atTTTGACAAGAAAGTATGTAATA------------TTACACATTGATTTGCATTTGTTCTAAATTTATCATCATCCTTATTA------tttttgagacagggtcactctctgtcacccaggctggagtgcagtggcatgatcaccatgcactgccg
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         354657 362 -   1771730 tatgaatccccagccccaatgaagcactcagatgatgtagcccttggctgacaacggcactgcaaccttgtgagaggccctgagccagaagcactcagggaaacctcttctgggttcctgaacagtggaaactgtggaagaccatgaatatttgttgttttgagctgctaagccttacataatatgttacgcaatagtaaataacta----atTTTTACATGACAGGATGTATTACtacacattaatttacacattaatttGCATTTGCTCTAAATTTATCATCATCGTTATTATTAC--tttttgagacagggccacgctctgtcacccaggctggagtgcagtggcatgatcaccatgcactgcag
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          93805 352 -    383796 tgtgtatcctcagccccagtgaaacactcagatgatggagccc-tggctgacaactggactacagccttgtgagaggaattcagacagaagcactcagggaaacctctcctggattcctgactgttggaacctgtgggagatgatgaatatttgttgttttgagctgctaaattttacataatttgttatgtaatagtaaata--------attTTCACAAGAAAGTAT----TATTACACATTAATTTAGACATTAATTTGCATTTGCTCTAAATTTATCATCATTATTACTAtta---ttattgagacagagtcacgctctgtcacccaggctggagtgcagtggcatgatcaccatgcactggag
i aotNan1.NW_018496904v1       C 0 C 0
e otoGar3.GL873550             16816500 5111 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I

a score=694565.000000
s hg38.chr6_GL000254v2_alt      1052280 102 +   4827813 tgtcgacttcctgggctcaagggaccctcttatctcagcgtcctgagtaactgggactacaggcatgaagcaccacgcctggctaattttctaaat-tttttt-
s panTro5.chr6                 30017924 102 + 175400573 tgtcgacttcctgggctcaagggaccctcttatctcagcgtcctgagtaactgggactacaggcatgaagcaccacgcctggctaattttctaaat-tttttt-
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30248607 102 + 173848474 tgtcgacttcctgggctcaagggaccctcttatctcagcgtcctgagtaactgggactacaggcatgaagcaccacgcctggctaattttctaaat-tttttt-
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6050977 102 +   6154872 tgtcgacttcctgggttcaagggaccctcttatctcagtgtcctgagtaactgggactacaggcatgaagcaccacgcctggctaattttctaaat-ttttgt-
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74719923 100 + 122973662 tgtcaacctgctgggctcaagggaccctctgatctcagcatcctgagtagctgggactacaggcatgaaccaccatgcctggctaattttctaa---tttttt-
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30405273 102 + 172585720 tgtcgacctcctgggctcaagggaccctctgatctcagcatcctgagtaactggaactacaggcatgaaccaccacgcctggctaattttctaaat-tttttt-
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   101838 101 +    231697 tgtcaacctcctggggtcaagggaccctctgatctcagcctcctgagtagctgggactacaggcatgaaccaccatgcctcactaattttct-aat-ttcttt-
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         101011 101 +    243043 tgtcgacctcctgggctcaagggaccctctgatctcagcctcctgagtagctgggactacaggcatgaaccgccatgcctgactaattttct-aat-tttttt-
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          16829 103 -    863181 tgttgacctcctgggctcaagggaccctctgatctcagcgtcctgagtaactgggactacaggcatgaagcaccacgcctggctaattttctaaatatttttt-
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29199609 101 -  71996105 tgtcgacctcctgggctcaagggaccctctgatctcagcgtcctgagtaactgggactacaggcatgaagcacctcgcctggctaattttct-aaa-tttttt-
i chlSab2.chr17                C 0 I 1
s manLeu1.NW_012101121v1         137635 101 +    273075 tgtcgacttcctggcatcaagggaccctccgatcgcagtctcctgagtagctgggactacaggcatgaaccaccatgcctgactaattttct-aat-attttt-
i manLeu1.NW_012101121v1       N 0 N 0
s saiBol1.JH378364                82816 102 +    187130 tgtcgacctcctgggctcaagggatcctgtgacctcagccttctgagtagctgggactactggcatgaaccaccatgcctggctaattttct-aat-ttttgct
i saiBol1.JH378364             C 0 I 1
s cebCap1.NW_016107755v1         355019 102 -   1771730 tgtcaacctcctgtacttaagagatcctgtgacctcaacctcctgagtatctgggactacaggcatgaaccaccatgtctgactaattttct-aat-ttttttt
i cebCap1.NW_016107755v1       C 0 I 9
s aotNan1.NW_018496904v1          94157 101 -    383796 tgtcgacctcctgggctcaagggatcttgtgacctcagcctcctgagtagctgggactacaggcatgaaccaccatacctggctaattttct-aat-tttttt-
i aotNan1.NW_018496904v1       C 0 C 0
e otoGar3.GL873550             16816500 5111 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I

a score=851090.000000
s hg38.chr6_GL000254v2_alt      1052382 120 +   4827813 gtagagatgggggtttctccatgttgcccaggctgatcttcaacatctggagtcaacaaatctgccttcctctgccttccacggtgctagaatcacaggtgtgagccaccacacctggcc
s panTro5.chr6                 30018026 120 + 175400573 gtagagatgggggtttctccatgttgcccaggctgatcttcaacttctggagtcaacaaatctgccttcctctgccttccacggtgctagaatcacaggcgtgagccaccacacctggcc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30248709 120 + 173848474 gtagagatgggggtttctccatgttgcccaggctgatcttcaacttctggagtcaacaaatctgccttcctctgccttccacggtgctagaatcacaggcgtgagccaccacacctggcc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6051079 120 +   6154872 gtagagatgggggtttctccacgttgcccaggctgatcttcaacttctggaatcaacaaatctgccttcctctgcattccacggtgctagaatcacaggcgtgagccaccacacctggcc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74720023 120 + 122973662 gtagagatgggggttttgccatgttgcccaggctgatcttgaacttctggagtcaacaaatctgccttcctcttccttccacagtgctaggatggcaggtgtgagccaccacacctggcc
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30405375 120 + 172585720 gtagagatgggggtttctccatgttgcccaggctgatcttgaacttctggagtcaacaaatttgccttcctctgctttccacggtgctagaatcacaggcgtgagccaccacacctggcc
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   101939 111 +    231697 gtagagatgggggtt--------ttgcccaggctgatcttgaacttctggagtcaacaaatctgcc-tcccctgccttccacagtgctaggatagcaggcacgagccaccacatctggcc
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         101112 112 +    243043 gtagagatgggggtt--------ttgcccaggctgatcttgaacttctggagtcaacaaatctgccttcctctgccttccacagtgctaggatagtaggtgtgagccaccacatatggcc
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          16932 120 -    863181 gtagagatggggctttctccatgttgcccaggctgatcttcaacttctggagtcaacaaatttgccttcctctgccttccacggtgctagaatcacaggcgtgagccaccacacctggcc
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29199711 120 -  71996105 gtagagataggggtttctccatgttgcccaggctgatcttcaacttctggagtcaacaaatttgccttcctctgccttccacggtgctagaatcacaggcgtgagctaccacacctggcc
i chlSab2.chr17                I 1 C 0
s manLeu1.NW_012101121v1           7095 120 +    273075 gtagagatggggctttctccatgttgcccaggctgatcttcaacttctggagtcaacaaatttgccttcctctgccttccacggtgctagaatcacaggcgtgagccaccacacctggcc
i manLeu1.NW_012101121v1       N 0 C 0
s saiBol1.JH378364                82919 120 +    187130 gtagagatgggggtttgaccatgtttcccaggctgatcttaaacttctggagtcaaccaatctgtcttcctctgcttttcacagtgctaggattgcaggcatgagccaccacaccaggcc
i saiBol1.JH378364             I 1 C 0
s cebCap1.NW_016107755v1         355130 120 -   1771730 gcagagatgggggtttgaccatgttgcccaggctgatgttgaacttctggcgtcaacaaatgtgccttcctctgctttatacagcactaggattgcaggcgtgagccaccacatctggcc
i cebCap1.NW_016107755v1       I 9 C 0
s aotNan1.NW_018496904v1          94258 120 -    383796 gtagaggtgggggtttgcccatgtttcccaggctgatcttgaacttctggagtcaaccaatctgccttcctctgctttcaacagtgctagtattgcaggcatgagcAAACAGACCAGGCC
i aotNan1.NW_018496904v1       C 0 C 0
e otoGar3.GL873550             16816500 5111 -  18854210 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I

a score=1857197.000000
s hg38.chr6_GL000254v2_alt      1052502 241 +   4827813 TAAATTAATTATAAGACATTACACATGTAACTTA-GTTTTAAAAGGTAAGGAGAATGTCCATGGCTGAAGAGGATGCATTTTATTACTATTCACAATGATCACTTTACTTGAACTTCAATTTCCAACTGTGTCCAAATTAAACACAAAAGGAAGATCCAACCCTTGCTGGGCTGattctttgatggcccccaacagccacctcccggtcattcactttcccccagttattcaagcaactcta
s panTro5.chr6                 30018146 241 + 175400573 TAAATtaattataagacattacacatgtaactta-cttttaaaaggtaaggagaatgtccatggctgaagaggatgcattttattaccattcacaatgatcactttacttgaacttcaatttccaactgtgtccaaattaaacacaaaaggaagaTCCAACCCTTGCTGGGCTGattctatgatggcccccaacagtcacctcccggtcattcactttcccccagttattcaagcaactcta
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30248829 241 + 173848474 TAAATtaattataagacattacacatgtaactta-cttttaaaaggtaaggagaatgtccatggctgaagaggatgcattttattaccattcacaatgatcactttacttgaacttcaatttccaactgtgtccaaattaaacacaaaaggaagaTCCAACCCTTGCTGGGCTGattctatgatggcccccaagagtcacctcccggtcattcactttcccccagttattcaagcaactcta
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6051199 241 +   6154872 TAAATtaattataagacattacacatgtaactta-gttttaaaaggtaaggagaatgtccatggctgaagaggatgcattttattaccattcacaatgatcactttacttgaacttcaatttccaactgtgtccaaattaaacacaaaagaaagaTCCAACCCTTGCTGGGCTGattctatgatggcccccaacagccacctcctggtcattcactttcccccagttattcaagcaactcta
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74720143 240 + 122973662 TAAATtaattataagatattaaacttgtaactta-gttttaaaaggtaaggagaatttccatggctgaaaaggatgtatttgatgaccattcacaatgatcactttacttgaacttcaatttccaactgtgtcctaattaaacacaaaTTGAAGATTCTACCCTtgctaggctgattctatgatgg-cctcaacaaccagctcctggtcattcaccttcctccagttactcaatcaactcta
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30405495 240 + 172585720 TAAATtaattataagacattaaacatgtaactta-gttttaaaaggtaagaagaatgtccatgggtgaagaggatgcattttattaccattcacaatgatcactttacttgaacttcaatttccaactgtgtcccaattaaacacgaaaggaagaTCCAATCCTTGCTGGGCTGattctatgatgg-cctcaacaaccagctcctggtcattcaccttcccccagttattcaaccaactctg
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   102050 241 +    231697 TaaagtaattataagacattaaacatgtaacttgtgttttaaaaggtaaggagaatttccatggccgaagaggatgtagtttaatatcgtttacaatgatcactttacttgaacttcaatttccaactgtgtcgcaattaaacacaaaaggaagaTCCAACCCTtgctaggctgattctatgatgg-ccccaacagccagctcgtggtcattcaccttctcccagtgattcaaccaactcta
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         101224 240 +    243043 Taaagtaattataagacattaaacacgtgactta-gttttaaaaggtaaggagaatttccctggccgaagacgatgtcgtttaatatcgttcgcaatgatcactttacctgaacttcaatttccaactgtgtcccaattaaacacaaaaggaagaTCCAAACCTtgctaggctgattctatgatgg-ccccaacagccagctcctggtcattcaccttcccccagtgattcaaccaactcta
i macNem1.NW_012013156v1       C 0 I 2
s cerAty1.NW_012002535v1          17052 240 -    863181 TAAATtaattataagacattaaacatgtaactta-gttttaaaaggtaagaagaatgtccatgggtgaagaggatgcattttattaccattcacaatgatcactttacttgaacttcaatttccaactgtgtcccaattaaacatgaaaggaagaTCCAGTCCTTGCTGGGCTGattgtatgatgg-cctcaacaaccagctcctggtcattcacctttccccagtgattcaaccaactcta
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29199831 240 -  71996105 TAAATtaattataagacattaaacatgtaactta-gttttaaaaggtaagaagaatgtccatgggtgaagaggatgcattttattaccattcacaatgatcactttacttgaacttcaatttccaactgtgtcccaattaaacacgaaaggaagaTCCAATCCTTGCTGGGCTGattctgtgatgg-cctcaacaaccagctcctggtcattcaccttcctccagttattcaaccaactcta
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           7215 240 +    273075 TAAATtaattataagacattaaacatgtaactta-gttttaaaaggtaagaagaatgtccatgggtgaagaggatgcattttattaccattcacaatgatcactttacttgaacttcaatttccaactgtgtcccaattaaacatgaaaggaagaTCCAGTCCTTGCTGGGCTGattgtatgatgg-cctcaacaaccagctcctggtcattcacctttccccagtgattcaaccaactcta
i manLeu1.NW_012101121v1       C 0 C 0
s saiBol1.JH378364                83039 241 +    187130 TAAATTAACCATAAGATATTAAACAGGTAACTTA-GTTGTAAAAGGTAAGGAGAATTTCCATGGCTGAAGAGGACGTATTTTACTACCGTTCACAATGATTGCTCTACTCGAACTTCAATTTCCAATTGTGTCCCAATTAAATACAAAAGGAAGATCAACCCCTTGTCaggctgattctatgatggcccccaacaaccacctcctgattattcaccttcccccagttattcaaccaactcta
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         355250 241 -   1771730 TAAATtaactataagatattaaacatgtaactta-gttgtgaaaggtaaggagaatttccatgactgaagaggatgtattttattaccattcacaatgatcacttcacttgaatttcaattttcaactatgtctcaattaaacacaaaaggaagatccaatccttgctaggctgattctatgatggcccccaatctctacctcctgatcattcaccttcccccagttattcaagcaactcta
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          94378 240 -    383796 TAAATtaactataagatattaaatatgtaactta-ggtgtaaaatgtaagaagaatttccatggctgaagaggatgtattttgttactgttcacaatgatcactttacttgaacttcaatttccaactgtgtctcaattaaacacaaaaggaagaTCCAATCCTTGCTTGGCTGattctaagat-acccccaacaagcacctcctggtcattcaccttcccccagttattcaaccaactcta
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16821611 238 -  18854210 tatattaattataagatattaaacatgtcatttg-gttgtaggatgtaagaagaatttccatggctaaaaaggttgtattgtatcatcacTCTCAACCACTTACTCATTTGAACTTCTATTTTCAACTCTGATCC-ATTAAAGAGAAAGGGAAGATCTAGGTTACGCTAGGCTGA--CTATGATGTCCCCCAATAAGTATGCCTTCATTATGcaccttccctcaggtattcaatcaacatta
i otoGar3.GL873550             I 5111 C 0
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I

a score=1382960.000000
s hg38.chr6_GL000254v2_alt      1052743 205 +   4827813 gtgtagatgctgctgtgaagggatttagcagatataactaagggcctcaattagttgactttaggctgg-gtttatcc--tgctttgactgtcctaataaggtgagtccttgaaaggtctgtgttctttctgagcatagagatttgcagtgtgagagggattcagcatgaggggtttcctctaccgtgggctttgaaaatgaagaggc
s panTro5.chr6                 30018387 205 + 175400573 gtgtagatgctgctgtgaagggatttagcagatataactaagggcctcaattagttgactttaggctgg-gtttatcc--tgctttgacggtcctaattaggtgagtccttgaaaggtctgtattcttcctgagcatagagatttgcagtgtgagagggattcagcatgaggggtttcctctaccgtgggctttgaaaatgaagaggc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30249070 205 + 173848474 gtgtagatgctgctgtgaagggatttagcagatataactaagggcctcaattagttgactttaggctgg-gtttatcc--tgctttgacggtcctaattaggtgagtccttgaaaggtctgtattcttcctgagcatagagatttgcagtgtgagagggattcagcatgaggggtttcctctaccgtgggctttgaaaatgaagaggc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6051440 205 +   6154872 gtgtagatgctgctgtgaagggatttagcagatataaccaagggcctcaattagttgactttagactgg-gtttatcc--tgctttgactgtcctaattaggtgagtccttgaaaggtctgtgttcttcctgagcatagagatttgcagtgtgagagggattcagcatgacgggtttcctctaccgtgggctttgaaaatgaagaggc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74720383 205 + 122973662 atataggtgctgttgtgaaaggatttagcagatataattaagggcctcaattagttgactttaggctag-gtttatcc--tgcttggactgtcctaatcaggtgagcccttgaaaggacagggttcttcctgaacatagagattcacagtgtgagagggactcagtatgaggggtttcctccaccatggggtttgaaaatgaaggggc
i nomLeu3.chr1a                C 0 I 366
s rheMac8.chr4                 30405735 205 + 172585720 atgtaggtgctgctgtgaagggatttagcagatataattaagggcctcaattagttgactttagactgg-atttatcc--tgcttggactgtcctaatcaggtgagcccttgaaaggactgggttcttcctgagcatagagaaacacagtgtgagagggattcagtgtgaggggtttcctccaccatgggctttgaaaacgaagaggc
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   102291 205 +    231697 atgtaggtgccgctgtgaagggatttagcagatacaattaaggggctcaattagttgactttaggctgg-gtttcttc--tgcttggactgttctaatcaggtgagcccttgaaaggactgggttcttcctgagcatagagaaatgcagtgtgagaggcattcagcatgaggggtttcctccaccgtgggctttgaaaatgaaggggc
i macFas5.chr4_KE145577_random C 0 I 324
s cerAty1.NW_012002535v1          17292 205 -    863181 atgtaggtgctgctgtgaagggatttagcagatataattaagggcctcaattagttgactttagactgg-atttatcc--tgcttggactgtcctactcaggtgagtccttgaaaggactgggttcttcctgagcgtagagaaacacagtgtgagagggattcagcatgaggggtttcctccaccgtgggctttgaaaatgaagaggc
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29200071 205 -  71996105 atgtaggtgctgctgtgaagggatttagcagatataattaagggcctcaattagttgactttagactgg-atttctcc--tgcttggactgtcctaatcaggtgagtccttgaaaggactgggttattcctgagcgtcgagaaacacagtgtgagagggattcagcgtgaggggtttccttcaccgtgggctttgaaaatgaagaggc
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           7455 205 +    273075 atgtaggtgctgctgtgaagggatttagcagatataattaagggcctcaattagttgactttagactgg-atttatcc--tgcttggactgtcctactcaggtgagtccttgaaaggactgggttcttcctgagcgtagagaaacacagtgtgagagggattcaacatgaggggtttcctccaccgtgggctttgaaaatgaagaggc
i manLeu1.NW_012101121v1       C 0 C 0
s saiBol1.JH378364                83280 205 +    187130 atgcaggcactgttgtgaagggattcagcagatataattaaggtcatcaattagttgactttaggctgg-gttttttc--tgcttggagtgtcctaaccaggtgagcctgggaaaggactgggttcttcctgagcatagagattcacagtgtgagagggattcagcatgaggggtttcctccactgtgggctttgaaaatgaaggggc
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         355491 205 -   1771730 atgtaggtgctgctgtgaagggattcagcagatataattaagggtgtcaactatttgactttaggctgg-gtttatcc--tgcttgcactgtcctaatcagctgagcccttgaaaacactgggttcttcatgagcatagagattcacagtgtgagagggattcagcatgaggggtttcctccactgcaggctttgaaaatgaaggggc
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          94618 205 -    383796 atgtaggtgctgctgtgaagggattcagcagatataattaagggtctcaattagttgactttatgctag-gttttttc--tgcttggactgtcctaatcaggtgagcctaggaaaggactgggtccttcctgagcatagagattcacagtgtgagagggattcagcatgaggggtttcctctattgcgggctttgaaaataaaggggc
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16821849 194 -  18854210 atggagatgctgctgtgaaggaattta-cagatataattacagtcccaaatcagttgactttcagatggtgattatccagggattgaactgtcctaatcacgtgagttttt-aaaagactgggttcttctggagcat-gagattcacaggcagagaaggactcagtgtgag-----tcttc------gggctttgaaagtagagagtt
i otoGar3.GL873550             C 0 C 0
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1         101464   2 +    243043 I

a score=419895.000000
s hg38.chr6_GL000254v2_alt      1052948 71 +   4827813 tgtgtaggaaagaacactgttaggcaccaggaattgagcacagccctgcctattctctgtattgacagcca
s panTro5.chr6                 30018592 71 + 175400573 tgtgtaggaaagaacactgttaggcaccaggaattgagcacagccctgcctattctctgtattgacagcca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30249275 71 + 173848474 tgtgtaggaaagaacactgttaggcaccaggaattgagcacagccctgcctattctctgtattgacagcca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6051645 71 +   6154872 tgtgtaggaaagaacactgttaggcaccaggaattgagcacagccctgcctattctctgtattgacagcca
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74720954 71 + 122973662 tgtgtaggaaagaatgctggtgagcaccaggaagtgagcacagccttccctgttctctacattgacagcca
i nomLeu3.chr1a                I 366 C 0
s rheMac8.chr4                 30405940 70 + 172585720 tgtgtaggaaagaacgctgttgggcaccaggaattgaacacagccc-tccctgtctctatattgacagcca
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   102820 70 +    231697 tgtgtaggaaagaatgctggtgaacaccaggaattcagcgcagcct-cctcgttctctacattgacaacca
i macFas5.chr4_KE145577_random I 324 C 0
s cerAty1.NW_012002535v1          17497 71 -    863181 tgtgtaggaaagaacgctattgggcaccaggaattgagcacagcccttcctgttctctatattgacagcca
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29200276 71 -  71996105 tgtgtaggaaagaacgctggtgggcaccaggtattgagcgcagccctctctgttctctacagtgacagcca
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           7660 71 +    273075 tgtgtaggaaagaacgctattgggcaccaggaattgagcacagcccttcctgttctctatattgacagcca
i manLeu1.NW_012101121v1       C 0 C 0
s saiBol1.JH378364                83485 71 +    187130 tgtataggcaagaatgctggtgggcaccaggaattgagcacagccctcCCTGTTTTCTACCTTGACAGCCA
i saiBol1.JH378364             C 0 T 62247
s cebCap1.NW_016107755v1         355696 70 -   1771730 tgtataggaaagaacgcttgtgggcaccaggaattgagcacagccct-cctgttctctacattgacatcca
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          94823 71 -    383796 tgtgtaggcaagaatgctggtgggcatcaggaattgaacacagccctccctgttctctaccttgacagcca
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16822043 54 -  18854210 cctacagcaaagaatgccagtgg-----------------cagcccacctgcctctctaccctgatagctg
i otoGar3.GL873550             C 0 C 0
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1         101464  2 +    243043 I

a score=1094557.000000
s hg38.chr6_GL000254v2_alt      1053019 162 +   4827813 gcaag-gaacagaaacctcagtcttacaactgccagaaactgcattctgcc----acctctgtataagcctgaaggagga------ttcaaaatgaaaacacagcttttggaagcccagaacagggattctatccacatcttgcccagatttctgaccaaggaagtataagca
s panTro5.chr6                 30018663 162 + 175400573 gcaag-gaacagaaacctcagtcttacaactgccagaaacttcattctgcc----acctctgtataagcctgaaggagga------ttcaaaatgaaaacacagcttttggaagcccagaacagggattctatccacatcttgcccagatttctgaccaaggaagtataagca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30249346 162 + 173848474 gcaag-gaacagaaacctcagtcttacaactgccagaaacttcattctgcc----acctctgtataagcctgaaggagga------ttcaaaatgaaaacacagcttttggaagcccagaacagggattctatccacatcttgcccagatttctgaccaaggaagtataagca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6051716 162 +   6154872 gcaag-gaacagaaacctcagtcttacaactgccagaaacttcattctgcc----acctctgtataagcctgaaggagga------ttcaaaatgaaaacacagcttttggaagcccagaacagggattctatccacatcttgcccagatttctgaccaaggaagtataagca
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74721025 162 + 122973662 gcaag-gaacagggacctcagtcttacaactgccagaaactgcattctgcc----acctctgtgtaagcctgaaggagga------ttcaaaatgataacacagcttttggaagcccagaacagagattctatccacatcttgcccagatttctgaccaaggaactataaaca
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30406010 160 + 172585720 gcaag-gaacagggacctcagtcttacaactgccagaaacttcattctgcc----acctctgtataagcctgaaggagga------ttcaaaatgaaaacacagcttttggaagcccagaac--agattctctccacattttgcccagatttctgagcaaggaactataagca
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   102890 162 +    231697 gcaag-gaacagggaattcggtcttacaactgtaagaaactgcattctgcc----acctctgtataaacctgaaggagga------ttccaaatgaaaacacagcttttggaagcccagaacagagattctatccacatcttgcccagatttctgactaaggaacaagaaaca
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          17568 162 -    863181 gcaag-gaacaggaacctcagtcttacaactgccagaaacttcattctgcc----acctctgtataagcctgaaggagga------ttcaaaatgaaaacacagcttttggaagcccagaacagagattctctccacattttgcccagatttctgaccaaggaactataagca
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29200347 114 -  71996105 gcaag-gaacaggaacctcagtcttacaactgccagaaactgcattccgcc----acctctgtataagcctgaaggagga------ttcaaaatgaaaacacagcTTTTGGAAGCCCAGAACAG------------------------------------------------A
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           7731 162 +    273075 gcaag-gaacaggaacctcagtcttacaactgccagaaacttcattctgcc----acctctgtataagcctgaaggagga------ttcaaaatgaaaacacagcttttggaagcccagaacagagattctctccacattttgcccagatttctgaccaaggaactataagca
i manLeu1.NW_012101121v1       C 0 C 0
s saiBol1.JH378364                21309 162 +    187130 gcagg-gaacaggaacctcagtcttacaactgccagaaactgcattctgtc----atctctgtataagcctgaaagagga------ttcaaaatgaaaacacagctttgagaagtccagaacggagattccatccacatcttgcccagacttctgactaaggaactataaaca
i saiBol1.JH378364             T 62247 C 0
s cebCap1.NW_016107755v1         355766 162 -   1771730 gcaag-gaacagggacctcagtcttacaactgccagaaactgcattctgcc----acctctgtgtaggcctgaaagagga------ctcaaaatgacaacacagctttgggaagcccagaacagagattccatccacatcatgcccagatttctgactaaggaactataaaca
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          94894 162 -    383796 gcaag-gaacagggacctcagtcttacaactgccagaaactgcattctgcc----acctctgtataggcctgaaggagga------ttcaaaacgaaaacacagctttgggaagtccagaacagagattccatccacatcttgcccagacttctgactaaggaactataaaca
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16822097 169 -  18854210 gcaatcaaacaaggacttcagtcctacaattgccagaaagtgaattctacccatgggctctgtataagcttaggggaggaccccacctcaagatgagggcacagctttgtgaaaccctgaacagagaacccatccacaccatgcctggatttct----aaggaccaataaaca
i otoGar3.GL873550             C 0 C 0
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I
e macNem1.NW_012013156v1         101464   2 +    243043 I

a score=223016.000000
s hg38.chr6_GL000254v2_alt      1053181 33 +   4827813 gataaatgggtgttgttttG-------CCAGTCGTGGTAG
s panTro5.chr6                 30018825 33 + 175400573 ggtaaatgggtgttgttttG-------CCAGTCGTGGTAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30249508 33 + 173848474 gataaatgggtgttgttttG-------CCAGTCATGGTAG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6051878 33 +   6154872 gataaatgggtgttgttttG-------CCAGTCGTGGTAG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74721187 33 + 122973662 gataaatgggtgttgttttG-------CCAGGCATGGTAG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30406170 33 + 172585720 gataaatgggtgttgttttG-------CTGGTCGTGGTAG
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   103052 33 +    231697 gataaatgggtgttgtttCG-------CCAGGGGTGGTAG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         101466 33 +    243043 GATAAATGGGAGTTGTTTCG-------CTAGGGGTGGTAG
i macNem1.NW_012013156v1       I 2 C 0
s cerAty1.NW_012002535v1          17730 33 -    863181 gataaatgggtgttgttttg-------ccgGTGGTGGTAG
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29200461 33 -  71996105 GATAAATGGGTGTTGTTTTG-------CCGGTCGTGGTAG
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           7893 33 +    273075 gataaatgggtgttgttttG-------CCAGGCATGGTAG
i manLeu1.NW_012101121v1       C 0 C 0
s saiBol1.JH378364                21471 33 +    187130 gctcaatgggtgtcgtttgg-------ccaggagtggtag
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         355928 33 -   1771730 gataaatgagtggtgtcagg-------ccaggcatggtag
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          95056 33 -    383796 gctcaatgggtgttgtttgg-------ccaggagtggtag
i aotNan1.NW_018496904v1       C 0 I 421
s otoGar3.GL873550             16822266 40 -  18854210 aataaatggccattctttagagacaacaaatttgtggtaa
i otoGar3.GL873550             C 0 C 0
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I

a score=12665.000000
s hg38.chr6_GL000254v2_alt      1053214  5 +   4827813 --------------------------TGCAC-------------------
s panTro5.chr6                 30018858  5 + 175400573 --------------------------TGCAC-------------------
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30249541  5 + 173848474 --------------------------TGCAC-------------------
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6051911  5 +   6154872 --------------------------TGCAC-------------------
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74721220  5 + 122973662 --------------------------TGCAC-------------------
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30406203  5 + 172585720 --------------------------TGCAT-------------------
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   103085  5 +    231697 --------------------------TGCAC-------------------
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         101499  5 +    243043 --------------------------TACAC-------------------
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          17763  5 -    863181 --------------------------TGCAT-------------------
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29200494  5 -  71996105 --------------------------TGCAT-------------------
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           7926  5 +    273075 --------------------------TGCAT-------------------
i manLeu1.NW_012101121v1       C 0 C 0
s saiBol1.JH378364                21504  5 +    187130 --------------------------tgcac-------------------
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         355961  5 -   1771730 --------------------------tgcac-------------------
i cebCap1.NW_016107755v1       C 0 I 361
s otoGar3.GL873550             16822306 50 -  18854210 tttggtatacagaaatagaaaattaatacaCAAGCTCAAGAGATAAGCAC
i otoGar3.GL873550             C 0 C 0
e aotNan1.NW_018496904v1          95089 421 -    383796 I
e calJac3.chr4                 30109561 33332 + 171630274 I
e colAng1.NW_012115566v1        2816942 2253 -   3067355 I

a score=7085.000000
s hg38.chr6_GL000254v2_alt      1053219 1 +   4827813 G
s panTro5.chr6                 30018863 1 + 175400573 g
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30249546 1 + 173848474 g
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6051916 1 +   6154872 G
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74721225 1 + 122973662 A
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30406208 1 + 172585720 g
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   103090 1 +    231697 G
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         101504 1 +    243043 G
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          17768 1 -    863181 g
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29200499 1 -  71996105 G
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           7931 1 +    273075 g
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2819195 1 -   3067355 g
i colAng1.NW_012115566v1       I 2253 C 0
s saiBol1.JH378364                21509 1 +    187130 g
i saiBol1.JH378364             C 0 I 373
s cebCap1.NW_016107755v1         356327 1 -   1771730 g
i cebCap1.NW_016107755v1       I 361 C 0
s otoGar3.GL873550             16822356 1 -  18854210 A
i otoGar3.GL873550             C 0 I 18
e aotNan1.NW_018496904v1          95089 421 -    383796 I
e calJac3.chr4                 30109561 33332 + 171630274 I

a score=411903.000000
s hg38.chr6_GL000254v2_alt      1053220 53 +   4827813 AATGAATTGATGAATTGATATGCACACTAATTACATAAAATAAAATATTTCTT
s panTro5.chr6                 30018864 53 + 175400573 aatgaattgatgaattgatatgcacactaattacataaaataaaatctttctt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30249547 53 + 173848474 aatgaattgatgaattgatatgcacactaattacataaaataaaatctttctt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6051917 50 +   6154872 AATGAACTGATGAATTGATATGCACACTAATTACATAAAATAAAATCT---TT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74721226 53 + 122973662 AATGAATTGATGAATTGATATATACACTAGTTGCACAAAATAAAATCTTTCTG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30406209 53 + 172585720 aatgaattgatgaattgatatgcacactagttacataaaataaaatctttctg
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   103091 53 +    231697 AATGAATTGATGAATTGATATGCACACTAGTTACATAAAATAAAATCTTTCTG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         101505 53 +    243043 AATGAATTGATGAATTGATATGCACACTAGTTACATAAAATAAAATCTTTCTG
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          17769 53 -    863181 aatgaattgatgaattgatatgcgcactagttacataaaataaaatctttctg
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29200500 53 -  71996105 AATGAATGGATGAATTGATATGCACACTAGTTACATAAAATAAAATCTTTCTG
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           7932 53 +    273075 aatgaattgatgaattgatatgcacactagttacataaaataaaatctttctg
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2819196 53 -   3067355 aatgaatttgtgaattgctatgcacattagttgcataaaataaaatgtttctt
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364                21883 51 +    187130 AATAAATTGATGAATTGATATGCACACTAGTTACATAAAATAAAA--TGTCTT
i saiBol1.JH378364             I 373 C 0
s cebCap1.NW_016107755v1         356328 53 -   1771730 aatgaattgatgagttgatatgcacattagttacagaaaataaaatctttctt
i cebCap1.NW_016107755v1       C 0 C 0
s otoGar3.GL873550             16822375 52 -  18854210 AATGAATTTATGAACTGATATTCAT-TTCCTTGCATGAAATAAAATCTTGCTT
i otoGar3.GL873550             I 18 C 0
e aotNan1.NW_018496904v1          95089 421 -    383796 I
e calJac3.chr4                 30109561 33332 + 171630274 I

a score=863338.000000
s hg38.chr6_GL000254v2_alt      1053273 106 +   4827813 AACTTTTTCAGTATTTTACATTTTATAATTTTC-TGTGATGCAA------TTTAATAGACTCATATTTCattcattcagtcaagaaaaattaatttaatccctacaatgaacc
s panTro5.chr6                 30018917 106 + 175400573 aactttttcagtattttacattttataattttc-tgtgatgcaa------tttaatacactcatatttcatTCATTCAGTCAAGAAAAATTAATTTAATCCCTACAATGAACC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30249600 106 + 173848474 aactttttcagtattttacattttataattttc-tgtgatgcaa------tttaatagactcatatttcatTCATTCAGTCAAGAAAAATTAATTTAATCCCTACAATGAACC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6051967 104 +   6154872 AACTTTTTCAGTATTTTACATTTTATAATTTTC-TGTGATGCAA------TTTAATAGACTC--ATTTCattcattcagtcaagaaaaattaatttaatccctacaatgaacc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74721279 106 + 122973662 AACTTGTTCAGTGTTTTACATTTTATAATTATC-TGTGATGCAA------TTTAATACACTCGCATTTCattcattcagtcaacaaaaattaatttagtccctacaatgaacc
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30406262 106 + 172585720 aactttttcagtattttacgttttataattttc-tgtgatgcaa------tttaatacactcatatttcattcattcagtcaacaaaaattaatttaatccctacgatgaacc
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   103144 106 +    231697 AACTTTTTCAGTGTTTTACACTTTATAATTATC-TATGATGTAA------TTTAATACACTCATATTTCattcattaagtcaacaaaaattaatttagttcctatgatgaacc
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         101558 102 +    243043 AACTTTTTCAGTGTTTTACACTTTATAATTATC-TGAGATGCAA------TTTAATACACTCATATTTCattcattaagtcaacaaa----aatttagtgcccatgatgaacc
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          17822 106 -    863181 aactttttcagtattttacattttataattttc-tgtgatgcaa------tttaatacactcatatttcatTTATTCAGTCAACAAAAATTACTTTAATCCCTACGATGAACT
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29200553 106 -  71996105 AACTTTTTCCGTATTTTACATTTTATAATTTTC-TGTGATGCAA------TTTAATACACTCATATTTCattcattcagtcaacaaaaattactttaatccctatgatgaact
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           7985 106 +    273075 aactttttcagtattttacattttataattttc-tgtgatgcaa------tgtaatacactcatatttcattcattcagtcaacaaaaattaatttaatccctacgatgaacc
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2819249 112 -   3067355 aacttttccagtatttttcattttataattttc-tatgatgcaatcaaattttaatacacacctatttcatTCATCCAATCAAGAAAAAACAATTTAGTTCCTATGATGAACC
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364                21934 106 +    187130 AACTTGGTTAGTGTTTTACATTTTGTAATTTTC-TGTGGTCCAT------TTTAATACACTCATGTTTCAATCACTCAGTCAACAAAAATTAATTTAGTGCCTACACTGAACC
i saiBol1.JH378364             C 0 I 406
s cebCap1.NW_016107755v1         356381 106 -   1771730 aactttttcagtgtttcatattttgtaattttc-tgtggtccat------tttaataCACACATATTTTAAtcattcagtcaataaaaattaatttagtgcctacactaaacc
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          95510 106 -    383796 AACTTTCTCAGTGTTTTACATTTTGTAATTTTC-TGTGGTCCAT------TTTAACACACTCATGTTTCAAtcactcagtcaacaaaaattaatttagtgcctacactgaacc
i aotNan1.NW_018496904v1       I 421 C 0
s otoGar3.GL873550             16822427 102 -  18854210 AACTATTTTAGTATGTTTTAGTTTATGATTTTTAGGTGATTCAG------TTT----TACTCCAACCATattcattcattcaataagaattaatttagt-cctattatgtacc
i otoGar3.GL873550             C 0 C 0
e calJac3.chr4                 30109561 33332 + 171630274 I

a score=486838.000000
s hg38.chr6_GL000254v2_alt      1053379  66 +   4827813 aggtgTGCCCT------------------------------------------CATATGCTTACGTGCCTGACATTCCAGAAGCTTCACAAGACCAaggtggagccag
s panTro5.chr6                 30019023  66 + 175400573 AGGTGTGCCCT------------------------------------------CATATGCTCACGTGCCTGACATTCCAGAAGCTTCACAAGACCAaggtggagccac
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30249706  66 + 173848474 AGGTGTGCCCT------------------------------------------CATATGCTCACGTGCCTGACATTCCAGAAGCTTCACAAGACCAaggtggagccac
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6052071  66 +   6154872 aggtgTGCCCT------------------------------------------CATATGCTCACGTGCCTGACATTCCAGAAGCTTCACAAGACCAaggtggagccac
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74721385  63 + 122973662 aggtATCCCCT------------------------------------------CATATGCTCACGTGCCTGACACT---GAAGCTTCACAAGACCgaggtggagacac
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30406368  66 + 172585720 aggtgTACCCT------------------------------------------CATATGCTCACGTGCCTGACATTCCAGAAGCTTCACAAGACCAAGGTGGAGCCAC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   103250  66 +    231697 aggtATCCCTT------------------------------------------CATATGCTCACGTGCCTGACACTCCAGAAGCTTCACAAGACCgaggtggagccac
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         101660  66 +    243043 aggtATGCCTT------------------------------------------CATATGCTCACGTGTCTGACACTCCAGAAGTTTCACAAGACCgaggtggagacac
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          17928  66 -    863181 AGGTGTACCCT------------------------------------------CATATGCTCACGTGCCTGACATTCCAGAAGCTTCACAAGACCAaggtggagccac
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29200659  66 -  71996105 aggtgTACCCT------------------------------------------CATATGCTCACGTGCCTGACATTCCAGAAGCTTCACAAGACCAaggtggagccac
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           8091  66 +    273075 aggtgTACCCT------------------------------------------CATATGCTCACGTGCCTGACATTCCAGAAGCTTCACAAGACCAAGGTGGAGCCAC
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2819361  66 -   3067355 AGGTATAGCCT------------------------------------------CATATGCTCACCTGCCTGACATTCTAGAAGCTTCATAAGACTGAGATGGAGCCAT
i colAng1.NW_012115566v1       C 0 C 0
s cebCap1.NW_016107755v1         356487  66 -   1771730 aggtacACCCT------------------------------------------CATATGGACACTTGCCTGACGTTCTAGAAGCTTCACAAGACCAaggtggagccac
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          95616  66 -    383796 aggtatgccct------------------------------------------aATATATTCACTTGCTTGACATTCAAGAAGCTTCACAAGATGgaggtggagccac
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16822529 108 -  18854210 aggaatgcctttccaaactggggatacaattttgatcaaaatagcccaaagcccatatgttcatgcgccttatcttcCCAGGTCTTTACAAGAGTGTGATCCATccat
i otoGar3.GL873550             C 0 C 0
e saiBol1.JH378364                22040 406 +    187130 I
e calJac3.chr4                 30109561 33332 + 171630274 I

a score=93558.000000
s hg38.chr6_GL000254v2_alt      1053445 10 +   4827813 tggaatgttt
s panTro5.chr6                 30019089 10 + 175400573 tggaatgttt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30249772 10 + 173848474 tggaatgttt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6052137 10 +   6154872 tggaatgttt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74721448 10 + 122973662 tggagtgttt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30406434 10 + 172585720 TGGAATGTTT
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   103316 10 +    231697 tggagtgttt
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         101726 10 +    243043 cagagtgttt
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          17994 10 -    863181 tggaatgttt
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29200725 10 -  71996105 tggaatgttt
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           8157 10 +    273075 TGGAATGTTT
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2819427 10 -   3067355 TGGAATGTTT
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364                22446 10 +    187130 tgaggtgttt
i saiBol1.JH378364             I 406 C 0
s cebCap1.NW_016107755v1         356553 10 -   1771730 tggagtgttt
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          95682 10 -    383796 tggagtgttt
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16822637 10 -  18854210 tggagcattt
i otoGar3.GL873550             C 0 C 0
e calJac3.chr4                 30109561 33332 + 171630274 I

a score=59513.000000
s hg38.chr6_GL000254v2_alt      1053455 6 +   4827813 taggtg
s panTro5.chr6                 30019099 6 + 175400573 taggtg
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30249782 6 + 173848474 taggtg
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6052147 6 +   6154872 taggtg
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74721458 6 + 122973662 taagtg
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30406444 6 + 172585720 TAGGTG
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   103326 6 +    231697 taagtg
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         101736 6 +    243043 taagtg
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          18004 6 -    863181 taggtg
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29200735 6 -  71996105 taggtg
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           8167 6 +    273075 TAGGTG
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2819437 6 -   3067355 TAGGTG
i colAng1.NW_012115566v1       C 0 I 273
s calJac3.chr4                 30142893 6 + 171630274 TAAGTG
i calJac3.chr4                 I 33332 C 0
s saiBol1.JH378364                22456 6 +    187130 tatgtg
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         356563 6 -   1771730 tatgtg
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          95692 6 -    383796 tctgtg
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16822647 6 -  18854210 taagtg
i otoGar3.GL873550             C 0 C 0

a score=238038.000000
s hg38.chr6_GL000254v2_alt      1053461 29 +   4827813 gagaaatgacacactctgactcacaggag
s panTro5.chr6                 30019105 29 + 175400573 gagaaatgacacactctgactcatagtag
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30249788 29 + 173848474 gagaaatgacacactctgactcacaggag
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6052153 29 +   6154872 gagaaatgacacactctgactcacaggag
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74721464 29 + 122973662 gagaaatgatacactctaactcaCAGGAG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30406450 29 + 172585720 GAGAAATGACACACTGTGACTCACAGGAG
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   103332 29 +    231697 gagaaatgacacactctgactGACAGGAG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         101742 29 +    243043 gagaaatgacacactctgactGACAGGAG
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          18010 29 -    863181 gagaaatgacacactgtgactcacaggag
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29200741 29 -  71996105 gagaaatgacacactgtgactcacaggag
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           8173 29 +    273075 GAGAAATGACACACTGTGACTCACAGGAG
i manLeu1.NW_012101121v1       C 0 C 0
s calJac3.chr4                 30142899 29 + 171630274 AAGAAATGACACGACCTGAGTCACATTAG
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                22462 29 +    187130 gagaAATGACAAACTCTGATTCACAGTAG
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         356569 29 -   1771730 gagaaatgagacactctgcctcacagtag
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          95698 26 -    383796 gagaaatgacacacactgactcac---ag
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16822653 28 -  18854210 aagaaatgatagaatctgactt-CAGTAG
i otoGar3.GL873550             C 0 C 0
e colAng1.NW_012115566v1        2819443 273 -   3067355 I

a score=8760495.000000
s hg38.chr6_GL000254v2_alt      1053490 1037 +   4827813 cag-------gacc-------actgt-gcagagaacagTCAC--GT-AGCAGGTAAT--GGGACAGTGCTAGTGTCACAAATAAGGAGTGACAAGGTGGTGGGGACTAAGGGGAGAGGAGGGCCTGAGGGATGAGAGGAATGGAGGGAAGGGCTGGAGATGCAGGAGGTGAGGAAATGGAGCAGAGGGAAAGAATTCGAAAGCAGCAGAA--CTCAGGTTTAAACACATTGTTTTATATA-TTTTAATACATCAATCTACAGAGCCTTGCAGGGTGATCTTTGCAGTTGGCCTTTAATACCTTATGTGGGTCTGCCT--------------------------AAAAACTAAT--T---TTTTTA-TGTTAATCA-------GGTTTA--AAAAATACTAAGTGTTCATATAAA-ATATACACAACACTTAGAAGTGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTGGTGAGGGGCATTGTGACTGCATTGAGTGCTTGCCACTGTGAGATGAATAAAGTCCGTACTGGCTCCTGGTTACAACATATAGTAACACAGTG-GCTACCTTGTATT-AGGAGATGTCCTGGACTCACA--CA--GAAACTCAGGGCTATGGAATGAAGGTAAATTTAAAATACTACAAGCGGGAGTCACAGATACATTGTCTGGGAAAGTGAAACTTAGGAGCTTTGTGATTCCTGTTGTAATGCT---------------------------------------------------TTTAGACACATTTATATGTCAAGGGACCAAAGTCACATT------TTTGGCCGATTAGATTCCTGATCATT-AGGAGTTACCAAGATTCTGCTACCCACTGTAGTTAATAAACAAAAAGCAAACTGGTCTCTA-------TT-------CTATCTCATGCACTCAGGCACAACTTTTCCAGATTTaaaaaacaaacaaacaacaacaacaaaaaa-cCCTGTCTCTACACCTCCATTCCCAGGGCAAGCTCACTC------TCTGGCAACAAGCTCCCT-GGGGTGATTTTTCTTCTAGAAGAGTCCACGGGGACAGGTAAGGAGTAGGAGGCAGGGAGTCCAGTTCTGGGACGGGGATTCCGTGATGCAAAGTGAAGAGAGAGGGACGGGGCCCATTCCGAGGG--TTTCTCCCTGGTTT
s panTro5.chr6                 30019134 1038 + 175400573 cag-------gacc-------actgt-gCAGAGAACAGTCAC--GT-AGCAGGTAAT--GGGACAGTGCTAGTGCCACAAATAAGGAGTGACAAGGTGGTGGGGACTAAGGGGAGAGGAGGGCCTGAGGGATGAGAGGGATGGAGGGAAGGGCTGGAGATGCAGGAGGTGAGGAAATGGAGCAGAGGGAAAGAATTCAAAAGCAGCAGAA--CTCAGGTTTAAACACATTGTTTTATATA-TTTTAATGCATCAATCTACAGAGCCTTGCAGGGTGATCTTTGCAGTTGGCCTTTAATACCTTATGTGGGTCTGCCT--------------------------AAAAACTAAT--T---TTTTTAATGTTAATCA-------GGTTTA--AAAAATACTAAGTATTCCTATAAA-ATATACACAACACTTAGAAGTGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTGGTGAGGGGCATTGTGACTGCATTGAGTGTTTGCCACTGTGAGGTGAATAAAGTCTGTACTGGCTCCTGGTTACAACATATAGTAACACAGTG-GCTACCTTGTATT-AGGAGATGTCCTGGACTCACA--CA--GAAACTCAGGGCTATGGAATGAAGGTAAATTTAAAATACTACAAGCGGGAGTCACAGATTCATTGTCTGGGAAAGTGAAACTTAGGAGCTTTGTGATTCCTGTTGTAATACT---------------------------------------------------TTTAGACACATTTATATGTCAAGGGACCAAAGTCACATT------TTTGGCCGATTAGATTCCTGATCATT-AGGAGTTACCAAGATTCTGCTACCCACTGTAGTTAATAAACAAAAAGCAAACTGGTCTCTA-------TT-------CTATCTCATGCACTCAGGCACAACTTTTCCAGATTTaaaaaacaaacaaacaacaacaacaaaaaa-cCCTGTCTCTACACCTCCATTCCCAGGGCAAGCTCACTC------TCTGGCAACAAGCTCCCT-GGGGTGATTTTTCTTCCAGAAGAGTCCACGGGGACAGGTAAGGAGTAGGAGGCAGGGAGTCCAGTTCTGGGACGGGGATTCCGTGATGCAAAGTGAAGAGAGAGGGACGGGGCCCATTCCGAGGG--TTTCTCCCTGGTTT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30249817 1038 + 173848474 cag-------gacc-------actgt-gcagagaacagTCAC--GT-AGCAGGTAAT--GGGACAGTGCTAGTGCCACAAATAAGGAGTGACAAGGTGGTGGGGACTAAGGGGAGAGGAGGGCCTGAGGGATGAGAGGAATGGAGGGAAGGGCTGGAGATGCAGGAGGTGAGGAAATGGAGCAGAGGGAAAGAATTCAAAAGCAGCAGAA--CTCAGGTTTAAACACATTGTTTTATATA-TTTTAATGCATCAATCTACAGAGCCTTGCAGGGTGATCTTTGCAGTTGGCCTTTAATACCTTATGTGGGTCTGCCT--------------------------AAAAACTAAT--T---TTTTTAATGTTAATCA-------GGTTTA--AAAAATACTAAGTATTCCTATAAA-ATATACACAACACTTAGAAGTGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTGGTGAGGGGCATTGTGACTGCATTGAGTGCTTGCCACTGTGAGATGAATAAAGTCTGTACTGGCTCCTGGTTACAACATATAGTAACACAGTG-GCTACCTTGTATT-AGGAGATGTCCTGGACTCACA--CA--GAAACTCAGGGCTATGGAATGAAGGTAAATTTAAAATACTACAAGCGGGAGTCACAGATCCATTGTCTGGGAAAGTGAAACTTAGGAGCTTTGTGATTCCTGTTGTAATACT---------------------------------------------------TTTAGACACATTTATATGTCAAGGGACCAAAGTCACATT------TTTGGCCCATTAGATTCCTGATTATT-AGGAGTTACCAAGATTCTGCTACCCACTGTAGTTAATAAACAAAAAGCAAACTGGTCTCTA-------TT-------CTATCTCATGCACTCAGGCACAACTTTTCCAGATTTaaaaaacaaacaaacaacaacaacaaaaaa-cCCTGTCTCTACACCTCCATTCCCAGGGCAAGCTCACTC------TCTGGCAACAAGCTCCCT-GGGGTGATTTTTCTTCTAGAAGAGTCCACGGGGACAGGTAAGGAGTAGGAGGCAGGGAGTCCAGTTCTGGGACGGGGATTCCGTGATGCAAAGTGAAGAGAGAGGGACGGGGCCCATTCCGAGGG--TTTCTCCCTGGTTT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6052182 1028 +   6154872 cag-------gacc-------actgt-gcagagaacagTCAC--GT-AGCAGGTAAT--GGGACAGTGCTAGTGTCACAAATAAGGAGTGACAAGGTGGTGGGGACTAAGGGGAGAGGAGGGCCTGAGGG---------ATGGAGGGAAGGGCTGGAGATGCAGGAGGTGAGGAAATGGAGCAGAGGGAAAGAATTCGAAAGCAGCAGAA--CTCAGGTTTAAACACATTGTTTTATATA-TTTTAATACATCAATCTACAGAGCCTTGCAGGGTGATCTTTGCAGTTGGACTTTAATACCTTATGTGGGTCTGCCT--------------------------AAAAACTAAT--T---TTTTAA-TGTTAATCA-------GGTTTA--AAAAATACTAAGTGTTCATATAAA-ATATACACAACACTTAGAAGTGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTGGTGAGGGGCATTGTGACTGCATTGAGTGCTTGCCACTGTGAGGTGAATAAAGTCTGTACTGGCTCCTGGTTACAACATATAGTAACACAGTG-GCTACCTTGTATT-AGGAGATGTCCTGGACTCACA--CA--GAAACTCAGGGCTGTGGAATGAAGGTAAATTTAAAATACCAGAAGCGGGAGTCACAGATACATTGTCTGGGAAAGTGAAACTTAGGAGCTTTGTGATTCCTGTTGTAATGCT---------------------------------------------------TTTAGACACATTTATATGTCAAGGGACCAAAGTCACATT------TTTGGCCGATTAGATTCCTGATCATT-AGGAGTTACCAAGATTCTGCTACCCACTGTAGTTAATAAACAAAAAGCAAACTGGTCTCTA-------TT-------CTATCTCATGCACTCAGGCACAACTTTTCCAGATTTaaaaaacaaacaaacaacaacaacaaaaaa-cCCTGTCTCTACACCTCCATTCCCAGGGCAAGCTCACTC------TCTGGCAACAAGCTCCCT-GGGGTGATTTTTCTTCTAGAAGAGTCCACGGGGACAGGTAAAGAGTAGGAGGCAGGGAGTCCAGTTCTGGGACGGGGATTCCGTGATGCAAAGTGAAGAGAGAGGGACGGGGCCCATTCCGAGGG--TTTCTTCCTGGTTT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74721493 1035 + 122973662 CAG-------GAAC-------ACTGT-GGAGAGAACAGTCAC--GT-AGCAGATCAT--GGGACGGTGCTAGTGTCACAATTCACGAGTGATAGTGTGGTGGGGACTACGGGGAGAGGAGGGCCTCAAGGATGAGAGGGACGGAGGGAAGGCCTAGAGAAGCAGGGGGTGAGGAAAAGGAGCAGA-GGAAAGAATTCAAAAGCAGCAGAATTCTTAGGTTTAAATACGTTGTTTTATGGA-TTTTAATACATCCATCTACAGAGTTTCGCAGGGTGTCCTTGACAGTTGGTCTTTAATACCTTATGTGGGTCTGCCT--------------------------AAAATTTAATCGT---TTTTTA-TGTTAATCA-------GGTTTA--AAAAATACTAAGTGTTCCTATAAA-ATATACACAACACTTAGAAGTGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTAGTGACGGGCATTGTGACTGCATTGAACAGTTGCAACTTTGAGGTGAATAAAGTCTGTAATGGCTCCTGGTTGCAACATATAGTAACACAGTG-GCTACTTTGTATTGAGGAGATGTCCTGGACTCACA--CA--GAATCTCAGGGCTGTGGAATGATGGTAAATTTAAAATACGACAAGCAGGAGTCACAGATACATTGTCTGGGAAAGTGAAACTTAGTAGCTTTGTGAGTCCTGTTGTAATGCT---------------------------------------------------TTTGGACACATTTATACATCAAGGGGCCAAAGTCACATT------TTTTACCTATTAGAGTCCTGATCATTCAGGGATTACCAAGATTCTGCTACCCAATGTATTTAATAAACAAAGAGCAAACTGGTCTCTA-------TT-------CTGTCTCATGCACTCAGGCGCAACTTTTCCCGATT--aaaaacaa--aaacaacaacaacaaaaa---------TCTATACCTCCATTCCCA-GACAAGCTCACTCTCACTGTCTGTCACCAAGCTCCGT-GGGGTGAGTTTTCTTCTAGAAGAGTCCAGGTGGACAGGTAAGGAGTGGGAGGCAAGGAGTCCAGTTCAGGGAGGGAGATTCCGGGATGAAAAGTGAAGGGAGAGGGACGGGGCTAATGCCGAGGG--TTTCTTCCTGGTTT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30406479 1042 + 172585720 CAG-------GACC-------ACTGT-GGAGAGAACAGTCAC--GT-AGCAGGTCAT--GGGACAGTGCTAGAGCCACAATTCGGGAGTGACAGGGTGGTGGGGACTAAGGGGAGAGGAGTGCCTGAGGGATGAGAGGGATGGAGGGAAGGGCTGGAGAAGCAGGAGGTGAGGAAATGGAGCAGAGGTAAAGAATTCGAAAGCAGCAGAATTCTTAGGTTTAAACAC-TTGTTTAATAGATTTTTAATACATCCATCTACAGAGCCTCGCTGGGTGTTCTTTGCAGTTGACCTTTAATACCTTATGTGGGTCTGCCC--------------------------GAAAACTAAT--TG--TTTTTA-CATTAATCA-------GATTTT--AAAAATACTAAGTGTTCCTATAAA-ATATACACAACACTTAGATGTGGATTATTCCTAAAAACAGGCAGTGCATGAGCACTGGTGAGGGGCACTGTGACTGCATTGAGTGCTTGCCACTGTGAGGTGAGTAAAGTCTGTACTGGCTCCTGGTTGCAACATAAAATAACACAGTG-GCTATCTTGTATT-AGGAGATGTCCTGGACTCACA--GA--GAAACGCAGGGCTATGGAATGAAGGTAAATATAAAATACTACAAGCGGGAGTCACAGATACATTGTCTGTGAAAATGAAACTTAGGAGCTTTGTGAGTCCTGTTGTAACGCT---------------------------------------------------TTTAGACACATTTATATGTCAAGGGACCAAAGTCACATT------TTCTACCGATTAGATTCCTGATCATTCAGGGGTTACCAAGATTCTGCTACTCACTGTAGTTAATAAACAAAAAGCAAACTGGTCTCTG-------TT-------CTATCTCATGCACTCAGGCACAACTTTTCCAGATTTaaagaaaaagaaaaaagaaaagaaaaaaaaGCCCTGTCTCTACATCTCCATTCCCAGGGCAAGCTCACTC------TCTGGCACCAAGCTCTCT-GGGGTGATTTTTCTTCTAGAAGAGTCCACTGGGACAGGTAAGGAGTAGGAGGCAGGGAGTCCAGTTCTGGAACGGGGAGTCCGTGATGAAAAGTGAAGAGAGAGGGACGGGGCCCATGCCGTGTG--TTTCTCCCTGGTTT
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   103361 1034 +    231697 CAG-------GACC-------ACTGT-GAAGAGAACAGTCAC--GT-AGCAGGTCAT--GGGACAGTGCTAGTGTCACAATTCACGAGTGACAGTGTGGTGGGGACTAAGGGGACAGGAGGGTCTGAAGGATGAGAGGGACTGAGGGAAGGGCTGGAGAAGGGGGCGCTGAGGAAAAGGACCAGAGG-AAAGAATTCGAAAGCAGCAGAATTCTTAGGTTTCAATACATTGTTTTATGGA-TTTTAATATATCCATCTACAGAGCCTAGCAGGGTGTCCTTGGCAGTTGGCCTTTAATACCTTATGTGGGTC-GCCT--------------------------AAAAACTAAT--TG--TTTTTA-TGTTAATCG-------AGTTTT--AAAAATACTAAGTGTTCCTATAAA-ATATACACAACACGTAGAAGTGCATACTTCCTGAAAACAGGCAGTGCATGAGCACTGGTGTGGGGCATTGTGACTGCACTGAACAGTTGCAACTGTGAGGTGAAT--AGTCTGTACTGGCTCCTGGTTGCAACATACAGTAACACAGTGTGCTACTTTGTATTGAGGAAATATCCTGGACTCACA--CA--GAAACTCAGAGCTATGGAGTGATAGTAAATTTAAAATACGACAAGTGGGAGTCACAGACACATTGTTTGCGAAAGTGAAATTTAGGAGCTTTGTGAGTCCTGTTGTAACGCT---------------------------------------------------TTTGGACACATTTATAAATCAAGGGACC-AAGTCATATT------TTTTACCGATTAGATTCCTGATCATTCGGGGGTTACCAAGATTCTATTACCCAATATATTTAATAAACAAAGAACAAACTGGTCTCTA-------TT-------CTCTCTTATGCACTCAGGCGCAACTTTTCCAGATTTaaaaaaaaaaaaaaagaaagaaagaaaaaa-----GTCTCTATACCTTCTTTCCCAGAGCAAGCTCACTC------TCTGGCACCAAGCTCCGT-GGGGTGAGTTTTCTTCTAGAAGAGTCCAGGCGGACAGGTAAGGAGTGGGAGGCAGGGAGTCCAGTTCAGGGATGGAGATTCCAGGATGAAAAGTGAAGGGAGAGTGACCGGGCCCATGCCCAGGG--GTTCTCCCTGGTTT
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         101771 1020 +    243043 CAG-------GACC-------ACTGT-GAAGACAACAGTCAC--GT-AGCAGGTCAT--GGGACAGTGCTAGTGTCACAATTCATGAGTGATAGTGTGGTGGGGACTAAGGGGAGAGGAGGGTCTGAAGGATGAGAGGGACTGAGGAAAGGGCTGGAGAAGCAGGCGGTGAGGAAAAGGAGCAGAGG-AAAGAAATCGAAAGTGGCAGAATTCTTAGGTTTCAATACATTGTTTTATGGA-TTTTAATATATCCATCTACAGAGCCTAGCAAGGTGTCCTTGGCAGTTGGCCTTTACTACCTTATGTGGGTCTGCCT--------------------------AAAAACTAGT--TG--TTTTTA-TGTTAATCG-------GGTTTT--AAAAGTATTAAGTGTTCCTATAAA-ATATACAGAACACGTAGAAGTGGATACTTCCTGAAAACAGGCAGTGCATGAGCACTGGTGAGGGTCATTGTGACTGCACTGAACAGTTACAACTGTGAGGTGAAT--AGTCTGTACTGGCTCGTGGTTGCAACATATAGTAACACAGTGTGCTACTTTGTATTGAGGAAATATCCTGGACTCACA--CA--GAAACTCAGAGCTATGGAATGATGGTGCATTTAAAATACGACAAGCGGGAGTCACAGATACATTGTTTGCGAAAGTGAAATTTAGGAGCTTTGTGAGTCCTGTTGTAATGCT---------------------------------------------------TTTGGACACATTTATAAATGAAGGGACCAAAGTCACATT------TTTTACGGATTAGATTCCTGATCATTCGAGGGTTACCAAGATTCTACTACCCAATGTATTTAATAAACAAACAGCAAACTGGTCTCTA-------TT-------CTGTCTCATGCACTCAGGCACAACTTTTTCAGATTAAAAAAAAA----------------AAAAAA-----GTCTCTATACCTTCATTCCCAGAGCAAGCTCACTC------TCTGGCACCAAGCTCCGT-GGGGTGAGTTTTTTTCTAGAAGAGTCCAGGGGGACAGATAAGGAGTGGGAGGCAGGGAGTCCAGTTCAGGGAGGGAGATTCCGGGACGAAAAGTGAAGGGAGAGGGACGGGGCCCATGCCCAGGG--GTTCTCCCTGGTTT
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          18039 1041 -    863181 cag-------gacc-------acttt-ggAGAGAACAGTCAC--GC-AGCAGGTCAT--GGGACAGTGCGAGAGCCACAATTTGGGAGTGACAGGGTGGTGGGGACTAAGGGGAGAGGAGCGCCTGAGGGATGAGAGGGGTGGAGGGAAGGGCTGGAGAAGCAGGAGGTGAGGAAATGGAACAGAGGGAAAGAATTCGAAAGCAGCAGAATTCTTAGGTTTAAACAC-TTGTTTAATAGATTTTTAATACATCCATCTACAGAGCCTCGCTGGGTGTTCTTTGCAGTTGACCTTTAATACCTTATGTGGGTCTGCCT--------------------------GAAAACTAAT--TG--TTTTTA-CGTTAATCA-------GATTTT--AAAAATACTAAGTGTTCCTATAAA-ATATACACAACTCTTCGATGTGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTGGTGAGGGGCACTGTGACTGCATTGAGTGCTTGCCACTGTGAGGTGAATAAAGTCTGTACTGGCTCCTGGTTGCAACATAAAATAACACAGTG-GTTGTTTTGTATT-AGGAGATGTCCTGGACTCACA--AA--GAAACGCAGGGCTATGGAATGAAGGTAAATATAAAATACTACAAGTGGGAGTCACAGACACATTGTCTGTGAAAGTGAAACTTAGGAGCTTTGTGAGTCCTGTTGTAACGCT---------------------------------------------------TTTAGACACATTTATATGTCAAGGGACCAAAGTCACATT------TTCTACCGATTAGA-TCCTGATCATTCAGGGATTACCAAGATTCTGCTACTCACTGCAGTTAATAAACAAAAAGCAAACTGGTCTCTG-------TT-------CTATCTCATGCACTCAGGCGCAACTTTTCCAGATTTaaagagaaagaaaaaagaaaagaaaaaaaaGTCCTGTCTCTACACCTCCATTCCCAGGGCAAGCTCAGTC------TCTGGCACCAAGCTCTCT-GGGGTGATTTTTCTTCTAGAAGAGTCCACTGGGACAGGTAAGGAGTAGGAGGCAGGGAGTCCAGTTCTGGGACGGGGAGTCCGTGATGAAAAGTGAAGAGAGAGGGACGGGGTCCATGCCGTGTG--TTTCTCCCTGGTTT
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29200770 1041 -  71996105 cag-------gacc-------actgt-ggAGAGAACAGTCAC--GC-AGCAGGTCAT--GGGACAGTGCTAGAGCCACAATTTGGGAGTGACAGGGTGGTGGGGACTAAGGGGAGAGGAGCGCCTGAGGGATGAGTGGGATGGAGGGAAGGGCTGGAGAAGCAGGAGGTGAGGAAATGGAGCAGAGGGAAAGAATTCGAAAGGAGCAGAATTCTTAGGTTTAAACAC-TTGTTTAATAGATTTTTAATACATCCATCTACAGAGCCTCGCTGGGTGTTCTTTGCAGTTGACCTTTAATACCTTATGTGGGTCTGCCC--------------------------GAAAACTAAT--TG--TTTTTA-CGTTAATCA-------GATTTT--AAAAATACTAAGTGTTCCTATAAA-ATATACACAACACTTAGATGTGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTGGTGAGGGGCACTGTGACTGCATTGAGTGCTTGCCACTGTGAGGTGAATAAAGTCTGTACTGGCTCCTGGTTGCAACATAAAATAACACAGTG-GTTGTTTTGTATT-AGGAGATGTCCTGGACTCACA--AA--GAAACGCAGGGCTATGGAATGAAGGTAAATATAAAATACTACAAGCGGGAGTCACAGATACATTGTCTGTGAAAGTGAAACTTAGGAGCTTTGTGAGTCCTGTTGTAATGCT---------------------------------------------------TTTAGACACATTTATATGTCAAGGGACCAAAGTCACATT------TTCTACCGATTAGA-TCCTGATCATTCAGGGATTACCAAGATTCTGCTACTCACTGTAGTTAACAAACAAAAAGCAAACTGGTGTCCG-------TT-------CTATCTCATGCACTCAGGCGCAACTTTTCCAGATTTaaagagaaagaaaaaagaaaagaaaaaaaaGTCCTGTCTCTACACCTCCATTCCCAGGGCAAGCTCAATC------TCTGGCACCAAGCTCTCT-GGGGTGATTTTTCTTCTAGAAGAGTCCACTGGGACAGGTAAGGAGTAGGAGGCAGGGAGTCCAGTTCTGGGACGGGGAGTCCGTGATGAAAAGTGAAGAGAGACGGACGGGGCCCATGCCGTGTG--TTTCTCCCTGGTTT
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           8202 1042 +    273075 CAG-------GACC-------ACTGT-GGAGAGAACAGTCAC--GC-AGCAGGTCAT--GGGACAGTGCGAGAGCCACAATTCGGGAGTGACAGGGTGGTGGGGACTAAGGGGAGAGGAGCGCCTGAGGGATGAGAGGGATGGAGGGAAGGGCTGGAGAAGCAGGAGGTGAGGAAATGGAGCAGAGGGAAAGAATTCGAAAGCAGCAGAATTCTTAGGTTTAAACAC-TTGTTTAATAGATTTTTAATACATCCATCTACAGAGCCTCGCTGGGTGTTCTTTGCAGTTGACCTTTAATACCTTATGTGGGTCTGCCT--------------------------GAAAACTAAT--TG--TTTTTA-CGTTAATCA-------GATTTG--AAAAATACTAAGTGTTCCTATAAA-ACATACACAACACTTCGATGTGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTGGTGAGGGGCACTGTGACTGCATTGAGTGCTTGCCACTGTGAGGTGAATAAAGTCTGTACTGGCTCCTGGTTGCAACATAAAATAACACAGTG-GCTATTTTGTATT-AGGAGATGTCCTGGACTCACA--AA--GAAACGCAGGGCTATGGAATGAAGGTAAATATAAAATACTACAAGTGGGAGTCACAGACACATTGTCTGTGAAAGTGAAACTTAGGAGCTTTGTGAGTCCTGTTGTACTGTT---------------------------------------------------TTTAGACACATTTATATGTCAAGGGACCAAAGTCACATT------TTTTACTGATTAGATTCCTGATCATTCAGAGATTACCAAGATCCTGCTACCCACTGTAGTTAATAAACAAAAAGCAAACTGGTCTCTG-------TT-------CTATCTCACGCACTCAGGCGCAACTTCTCCAGATTTaaagaaaaagaaaaaagaaaaggaaaaaaaGCCCTGTCTCTACACCTCCATTCCCAGGGCAAGCTCACTC------TCTGGCACCAAGCTCTCT-GGGGTGATTTTTCTTCTAGAAGAGTCCACTGGGACAGGTAAGGAGTAGGAGGCAGGGAGTCCAGTTCTGGGACGGGGAGTCCGGGATGAAAAGTGAAGAGAGAGGGACGGGGCCCATGCCGTGTG--TTTCTCCCTGGTTT
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2819716 1019 -   3067355 CAG-------GACC-------ACTGT-GGAGAGAACGGTCAC--GT-AGCAGGTAAT--GGGACAGTGCTAGAGCCACAATTCAGGAGTGACAGGGTGGTGGGGACTAAGGGGAGAGGAGGGCCTGAGGGATGAGAGGGACTGAGGGAAGGGCTGGAGAAGCAGGAGGTGAGGAAAAGGAGCACAGGGAAAGAATTTGAAAGCAGCAGAATTCTTAGGTTTAAACATATTGTTTTATAGATTTTTAATACATCCATCCACAGAGCCTCACAGGGTG----------------------ATCTTATGTGTGACTGCCCCCTCTCCaaaaaaaaaaaaaaaaaaaaaaaaCGAAT--TG---CTTTA-TGTTAATCT-------GAATTTAAAAAAATACTAAGTGTTCCAATAAA-ATATGGACACCACTTAGATGTGGATACATCCTCAAAACAGGCAGTGCATGAGCACTGGTGAAGGGCATTTTGAC-----TGAGCACTTGCAACTTGGAGGTGAATAAAGTCTGTACTGGATCCTGGTTGCAACATACAGTAACACTTTG---TACTTTGTATTGAGAAGATGTCCTGGACTCAAA--CA--GAATATCCGGGCTATGGAATGAAGGTAATTTTAA---ACTACAAGTGAGAGTCACAGATACGTAGCCTGGGAAAGTAAAACTTAAGAGCTTTGTGTGTCCAGTTTTAATGCA---------------------------------------------------TTTAGACATATTTATATATCAAGGAGGCAAAGTTACACT------ATTTACAGATTAAATTCCTTATAATTCAGGGGTTACCAAGATTCTGCTACCCAGTGCAGTTAATTAAAAAAAAAGAAACTGGTCTCCA-------TT-------CTACCTCATGTGCGGAGACACAACTTTTCCATATATAAAGAAA-----------------AAAAAA---CTGTGTCTACACCTCCATTCCCAAGACAAGCTCACTC------TCTAGCACTAAGCTCCCT-GGGGTGAGTTTTCTTCTAGAAGAGACCAGGGGGACAGGTAAAGAGTGGGAGGCACAAAGTCCGGTTCAGGGACAGGCACTGTGGAATGAAAAGTGAAAGGAGAGAGACTGGGCCCATGGCGAGGG--TTTCTCCCCGGTTT
i colAng1.NW_012115566v1       I 273 C 0
s calJac3.chr4                 30142928  955 + 171630274 CAAAACTGCTGAGC-------ACTAC-GGGGAGA--ACAGAC--ATGGGCAGGAAGTGAGGGACAGTGTTAGTGCCACAATTCAGGAGTGACAGGGTGGCAGGGACTAAGGGGAGAAAAGGGTGTGAGGGATGACAGGGGCAGAGAGAAGGGCTGGAGAAGCAGGAGGTGA------------------------GGAAAAGGGGCAGAG-----------GAA-------------AGAATTCTAAAG----CAGTGGAAGAGCCTAGCAGGGGGTTCTTT-TCATTAGTATTTAATGCATTTTGT-GGACTTCCT--------------------------GAAAACTAAT--GG-CCTCTT--TATGATTAAAAAAAATGGGTTA--GAAAATACCAAGTGTTCAAATAAA-ACATACTCATTGCTTAGGTGTGTGTAGCTCAGGAAAACAGGAAGTGCTTGAGCGCTGGTGAAGAGCATTGAGACTGCATGGAGCTCTCATAACTCTGAG-----TGCTGAC--TACAGGCTCCCGGTTGCAATATACAGTAACA-AACCTGCTTCTTTGTATT---CAGACGTTCTGGACTCACA--CAGGGAAACT---GATTAGGGAATGGTGAT-AATTTTAAATGTAAGAACCCAGAGTCACAGATCCATAGTCTAGGAAGGTAAAACTTAGGAGCTTTGAGAGTTTAACTGTAATGCT--------------------------------------------------GTTTTGACACA--------------GGTC-----------------TTTTACAGATTGGAATCCTAATCATTCAGAGATGACCAATATTGTGCTACCTACTGTA-TTAATAAACAAAAGGGAACCTGGTCTCTA-------TGAGAATCTCTATCTGGTGCCTTCAGACAAAACTTCACCAGGTTTCAAGA-------------------GAAAAC-CCCTGTCTCTACACCTCCACTCCCAGGGCGAGCTCACTC------TCTGGCATCAAGTTCCCT-GTGGTGAATTTCCTTGTACAAGAGTCCAAGGGGAGAGGTAAGGAGTGGGAGGCAGGGAGTCCAGTTCAGGGACGGGGATTCCAGGAGGCGAAATGAAGGGAAAGAAGCTGGGCGCAGCCTGGGTT--TCTCTCTCTGGTTT
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                22491 1008 +    187130 CAG-------GATC-------ACTAC-GGAGAGA--AGTCAC--AT-AGCAGGTAAT--GGTACAGTGCTAGAGCCACTATTCGGGAGTGACAGCGTGGTGGGGAATAAAGGGAGAGGAAGGGCTGAGGGATGAGAAGGATGGAGGGAAGGGCTGGAGAAGCAGGAAAGAA-----------------------TTGGAAAGCAGTAGAATTCTTAGTTTTGAACACATTGTTTTGCAGATTTTTAACACATCCATCTACAGAGCCTAGCAGGGTGTTCTTCGTAGTTGGCCTTTAATACCTTATGTAGGTCTGCCT--------------------------AAAAGCTAAT--TG-TTTCTTA-TATTAATCA-------GGTTTA--AAAAATACTGAGTGTTCCTATAAA-ATAAGCACACCACTTAGATGTGGACACTTCCTAAAAACAGGCAATACATGAGCACTGGTGAGGGGCATTGTGACTGCATTGAACACTTGAGATTGTGAGGTGAATGAAGTCTGTACCGGCTCCTGGTTGCAACATAC-GTAACACAGTGTGATGCTTTGTACTGCGGAGATGTCCTGGACTCACA--CA--GAAACTCAGGGCTATGGAGTAAAGGTAAATTTAAAATACAACAATCAGGAGTCACAGATACATTGTCTGGGAAAGTGAAAC--AGGAACTTTATGAGTCCTGTTCTAATGCT---------------------------------------------------TTTAGACACATTTATATATCAAGGGGCCAAAGTCACATTTTTTTTTTTTACCAATTAGGTTCCTGATCATTCAGGAGTTATCAAGATTTTGTTACCCACTGTAGTTAATAAACAAAAAGCAAACTGGTCTCTA-------TG-------CTATCTCATGCTCTCAGGCAAAACTTTTCCAGATTTGAACA--------------ACAACAAAAAA-CCCTGTCTCTACACCTCCATTCCCAGGGCGAGTTCACTC------TCCGGCAGCAAGTTTCCT-GGAGTGAGTTTTGTTCTAGCAGAGTCCAGGGGGACAGGTAAGGAGTGGGAGTCAGGAAGTCCAGTTCAGGGACGGAGA-TACGGGATGAAAAGTGGAGGGAGAGGGACGCGGCCCATGCTGAGGG--TTTTTCTCTGGTTT
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         356598 1078 -   1771730 cag-------gacc-------actgt-ggAGAGAACAGTCAC--AT-AGCAGGTAAT--AGGACAGTGTTAGTGTCACAATTCAGGAGTGACAGTGTGGTGGGGACTAA-GGGAGAGGAGGGCCTTAGGGATGGAAGGGATGGAGCGAAGGGCTGGAGAAGCAGGAGGTGAGGAGATGGAGCAGA-GGAAAGAATTTGAAAGCAGCAGAATTCTTAGGTTTAAACACATTGTTTTATAGATTTTTAATACATCCATCTACAGAGCCTCTCAGGGTGTCCTAAGCAGTTGGGCTTTAATACCTTATGTAGATCTGCCT--------------------------AAAAACTAAT--TG-TTTCTTA-TGTTTATCA-------GGTTTA--AAAAATACTAAGTGTTCCTGTAAA-ATAAACCCACCATTTAGATGTGGACACTTCCTAAAAACAGGCAGTGTTTCAGCACTGGTGAGGGGCCTTGTGACTGCACTGAACACTTGCGACTGTGAGGTGAATGAAGTCTGTACTGGCTCCTGGTTGCAACATACAGTAACACAGTGTGCTACTTTGTACTGAGGAGATGTCCTGGACTCACA--CA--GAAACTCAGGACTTTAGAATGAAGGTAAATTTAAAATACATCAAGTGGGAGTCACAGATACATTTCCTGGGATAGTGAAAG--AGAAGCTTTATGAGTCCTATTGTAATGCtttgtttatttatttatttgtttatttTCTTGCCTTGTCTCAGATGAGAGCTTTTAGACACATTTATATATCAATGGGCCAAAGTCGCATT------TTTTACCGATTAAATTCCTGATCATTCAGGGGTTACCAAGATTCTGCTACCCACTGTAGTTAATAAATAAAAAGCAAACTGGTCTCTA-------TG-------CTAGCTCATGCTCTCAGGCAAAATTTTTCCAGATTTGAAAA---------------CAAAACAAAA-CCCTGTCTCTACACCTCCATTCCCAGGGCGAGCTCAATC------TCTGGCACTAAGCTTCCT-GGGGTGAGTTTTCTTCTAGAAGACTCC-GGGGGACAGGTAAGAAGTTGGAGGCAGGGAGTCCAGTTCAGGGACCGGGATGCAGGGATGAAAAGTGAAGGGAGAGGGACGGGGCCCATGCTGAGGGTTTCTCTCTCTGGTTT
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          95724 1027 -    383796 cag-------gacc-------actgt-ggAGAGAATAGTCAC--GT-AGCAGGTAAT--GGGACAGTGCTAGAGCCAAAATTCAGGAGTGACGGGGTGGTGGGGAATAAAGGGAGAGGAAGGCCTTAGGGATGAGAGGGACAGAGGGAAGGGCTGGAGAAGCAGGAGGTGAGGAGAAGGACCAGAGGGAAAGAATTCAAAAGCAGCAGAATTCTCAGGTTTAAACACATTGTTTTACAGATTTTTAATACACCCAAATACAGAGCTTCTCAGGGTGTTCTTTGCAGTTGGCCTTTGATACCTTATGTAGGTCTGCCT--------------------------AAAAACTAAT--TG-TTGCTTA-TGTTAATCA-------GGTTTA--GAAAATACTAAGTGTTCCTATAAA-ATAAACACCCCACTTAGATGTGGTTACTTCCTAAAAACAGGCAGT------GCACTGGTGAGGGGCATTGTGACTGCACTGAACACTTGCGACTGTGAAGTGAATGAAGTCTGTACTGGCTCCTGGTTGCAACATACAGTAACACAGTGTGCTACTTTGGATTCAGGAGATGCCCTGGACTCACA--CA--GAAACTCAGGTCTATGCAGTGAAGCTAAATTTAAAATACAACAAGCGGGAGTCACAGATACATTGTCTGGGAAAGTGAAAC--AGGAGCTTTGTGAGTCCTGTTGTAATGCT---------------------------------------------------TTTAGACACATTTATATATCAAGGGGCCAAAGTCACACT------TTTTGCCAATTAGGTTCTCGATTATTCAGGAGTTATCAAGATTCTGCTACCCACTGTAGTTAATAAACAGAAAGCAAACTCGCCTCTA-------TG-------CTATCTCATGCTCTCAGGCAAAAAGTCTTCAGATTTGAACAGCA-----------ACAACAAAAAA-CCCTGTCTCTACACCTCCGTTCCCAGGGAGAGCTCACTC------TCTGGCACTAAGCTTCCTGGGGGTGAATTTTCTTCTAGAAGAGTCCAGGGGGACAGGTAAGGAGTTGGAGGCAGGCAGTCCAGTTCAGGGACCGGGATGTAGGAATGACAAGTGAAGGGAGAGGGACGGGGCCCATGCTGAGGA--TTTCTCTCTGGTTT
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16822681  961 -  18854210 CAG-------GACTGATGAAGACTGTGGGGGAGAACAGTTGTGGGC-AGCAGGGGA---GGGACAA-GCTCGTGCCACAGTTCAGGGGTGACAG-GTGGT-GGGACTAAGGGGAGA-AAGGGTCTAAGGGATGAAAGGGACAGAGGGAAGGGCCGGAGAAGCAGTAGGCGAGGAACAATATCAGAGGGAAAGAATTGTAAAGCAGCTGAATTCTCGGATTTAAATACAGTGTTTTATAGATTTTTAATA----------CAGAGCCCAGCAGGGTGCTCTTTGCATTTGGTAATTAATACACT---------TGC----------------------------AGAAGCTAAT--TTCCTCCTAA-TATTAATCA-------GGTT----GAAAATACAAAGTGTCCCCTTAAAGATATACACACAGCTTAGATGTGAATAATTCATAGAGACAGGCAATGCCTGAGCAGTGGTGAAAG----------CACTTTGAGCACGTGCAGCTTTGAAGTGGTTAAGGTTC-TAC-AACTCCTGGTTGAAATACACAGTCACAAATTGTGCTTCTTTGTATG-AGGAAATGTCCTGCACTCTCAAGTA--TAGACTAAGGGATGTGGAATGAAGATAGATTTAA-ATACAACAACTCAGAATCCAAGTTACATAGTCCAGGAAAGTAAAACCTGGGAGCTTTGGGAGTCTAGCTGTAGTGAG---------------------------------------------------TTTAGACACCTTGCTCTATCAAGGGGCCACAATCACTTC------TGTTACAGATTAGATTCCTGATCACTGAGGTGTTACCAAGATTGTGCTGCACACT--AGTTAATAAGGAAGAAGGAAACTGGTCTCCCCGAGAGTTT-------CCGTCAGGTGTGTTTAGACACAACT---CCAGGTTTATAGA-------------------GAAAAC-CACCATCTCTGCACCTCCAAG---AGAGGGAGCTTA--C------TCTGGCATCAAGTTCCCC-GAGGATGAGTTTCGTTTAGAAGAATCGAGACGGGGAGG-AAAGAGTAGGAGGCAG--AGTCCAGTTCAGGGA-GAGGATTC----------------AGGAAAGGGGCTGGACCCAGACCGGGGG----------------
i otoGar3.GL873550             C 0 C 0

a score=367817.000000
s hg38.chr6_GL000254v2_alt      1054527 35 +   4827813 CT-CAGACAGCTCCTGGGCCAAGACTCAGGGAAACA
s panTro5.chr6                 30020172 35 + 175400573 CT-CAGACAGCTCCTGGGCCAAGACTCAGGGAAACA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30250855 35 + 173848474 CT-CAGACAGCTCCTGGGCCAAGACTCAGGGAAACA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6053210 35 +   6154872 CT-CAGACAGCTCCTGGGCCAAGACTCAGGGAAACA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74722528 35 + 122973662 CT-CAGACAGCTCCTGGGCCAAGACTCAGGGAAACA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30407521 35 + 172585720 CT-CAGACAGCTCCTGTGCCAAGACTCAGGGAAACA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   104395 35 +    231697 CT-CAGACAGCTCGTGGGCCAAGACTCAGGGAGACA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         102791 35 +    243043 CT-CAGACAGCTCCTGGGCCAAGACTCAGAGAGACA
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          19080 35 -    863181 CT-CAGACAGTTCCTGGGCCAAGACTCAGGGAAACG
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29201811 35 -  71996105 CT-CAGACAGTTCCTGGGCCAAGACTCAGGGAGACA
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           9244 35 +    273075 CT-CAGACAGCTCCTGGGCCAAGACTCAGGGAAACA
i manLeu1.NW_012101121v1       C 0 I 510
s colAng1.NW_012115566v1        2820735 35 -   3067355 CT-CAGACAGCTCCTGGGCCATCATTCAGGGAGACA
i colAng1.NW_012115566v1       C 0 C 0
s calJac3.chr4                 30143883 36 + 171630274 CCACAGACAGATCGTTGGCCAGGACTCAGGCAGACA
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                23499 34 +    187130 CT-CAG-TAGCTCCTGGGCCAAGACTCAGGAAGACA
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         357676 34 -   1771730 CT-CAG-CAGCTCCTCAGCCAAGACTCAGGGAGACA
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          96751 34 -    383796 CT-CAG-CAGCTCCTGGGCCAAGACTCAGGGAGACA
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16823642 27 -  18854210 -T-CAG-----TCCTGGGCCAGG-CTCAGG-AGACA
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  932977 35 +  72498081 CT-CACACAGCTCCCTGACCAGGACTCAGGGAGTCA
i canFam3.chr12                N 0 C 0

a score=4363428.000000
s hg38.chr6_GL000254v2_alt      1054562 466 +   4827813 TTGAGACA-GAGC-GCT---TGGCACAGAAGTAGCG-GGGTCAGGGCGAAGTCCCAGGGCCTCAGGCGTGGCTCTCAGGATCTCAGGCCCCAAAGGCGGTGTATGGATTG-GGG-AGGCCCAGCGCTGGGCATTCCCCATCTTTGCA-GGGTTTCTCTTCTCCCTCTCCCAACCTGTGTCGGGTCCTTCTTCCTGGGTACTCACCGGGCTGCCCCAGTTCTCACTCCCATTGAGTGTCGGGTTTCTAGAGAAGCCAATCAATGTAGCCGCGG-TCCCGGTTCTAAAGTTCCCA-CGCACCCACCGGGACTC-CGATTCTTCCCAGTCGCCGAGGATGG-T-GTCATGGCGCCCCGAACCCTGCTTCTGCTGCTCTCGGGGGCCCTGGTCCTGACCCAGACCTGGGCA-----------------------------------------------------------------------------------GGTGAGTGCGGGGTCGGGAGGGAAACGGCGTCTGTGGGGAGTAGCTAGGGGCCTGCCCGGCGGGGGCGCAGGA-----------------------------------------------------------------------
s panTro5.chr6                 30020207 466 + 175400573 TTGAGACA-GAGC-GCT---TGGCACAGAAGTAGCG-GGGTCAGGGCGAGGTCCCAGGGCCTCAGGCGTGACTCTCAGGATCTCAGGCCCCAAAGGCGGTGTATGGATTG-GGG-AGGCCCAGCGCTGGGGATTCCCCATCTCCGCA-GGGTTTCTCTTCTCCCTCTCCCAACCTGTGTCGGGTCCTTCTTCCTGGATACTCACCGGGCTGCCCCAGTTCTCACTCCCATTGAGTGTCGGGTTTCTAGAGAAGCCAATCAATGTAGCCGCGG-TCCCGGTTCTAAAGTTCCCA-CGCACCCACCGGGACTC-CGATTCTCCCCAGTCGCCGAGGATGG-T-GTCATGGCGCCCCGAACCCTGCTTCTGCTGCTCTCGGGGGCCCTGGTCCTGACCCAGACCTGGGCA-----------------------------------------------------------------------------------GGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCTGTGGGGAGTAGCTAGGGGCCTGCCCGGCGGGGGCGCAGGA-----------------------------------------------------------------------
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30250890 466 + 173848474 TTGAGACA-GAGC-GCT---TGGCACAGAAGTAGCG-GGGTCAGGGCGAAGTCCCAGGGCCTCAGGCGTGACTCTCAGGATCTCAGGCCCCAAAGGCGGTGTACGGATTG-GGG-AGGCCCAGCGCTGGGGATTCCCCATCTCCGCA-GGGTTTCTCTTCTCCCTCTCCCAACCTGTGTCGGGTCCTTCTTCCTGGATACTCACCGGGCTGCCCCAGTTCTCACTCCCATTGAGTGTCGGGTTTCTAGAGAAGCCAATCAATGTAGCCGCGG-TCCCGGTTCTAAAGTTCCCA-CGCACCCACCGGGACTC-CGATTCTCCCCAGTCGCCGAGGATGG-T-GTCATGGCGCCCCGAACCCTGCTTCTGCTGCTCTCGGGGGCCCTGGTCCTGACCCAGACCTGGGCA-----------------------------------------------------------------------------------GGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCTGTGGGGAGTAGCTAGGGGCCTGCCCGGCGGGGGCGCAGGA-----------------------------------------------------------------------
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6053245 466 +   6154872 TTGAGACA-GAAC-GCT---TGGCACAGAAGTAGCG-GGGTCAGGGCGAAGTCCCAGGGCCTCAGGCGTGGCTCTCAGGATCTCAGGCCCCAAAGGCGGTGTATGGATTG-GGG-AGACCCAGCGCTGGGGATTCCCCATCTCCGCA-GGGTTTCTCTTCTCCCTCTCCCAACCTGTGTCGGGTCCTTCTTCCTGGATACTCACCGGGCTGCCCCAGTTCTCACTCCCATTGAGTGTGGGGTTTCTAGAGAAGCCAATCAATGTAGCCGCGG-TCCCGGTTCTAAAGTTCCCA-CGCACCCACCGGGACTC-CGATTCTCCCCAGTCGCCGAGGATGG-T-GTCATGGCGCCCCGAACCCTGCTTCTGCTGCTCTCAGGGGCCCTGGTCCTGACCCAGACCTGGGCA-----------------------------------------------------------------------------------GGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCTGTGGGGAGTAGCTAGGGGCCTGCCCGGCGGGGGCGCAGGA-----------------------------------------------------------------------
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74722563 461 + 122973662 TTGAGACA-GAGC-GCT---TGGCACAGGAGGAGCG-GGGTCAGGGCGAAGTCCCAGGGCCCCAGGCGTGG-TCTCAGGGTCTCAGGCCCCGAAGGCGGTGTATGGATTG-GGG-AGGCCCAGCGTTGGGGATTCCCCATCTCCGCA---GTTTCTCTTCT---TTTCACAACCTGCACCTGGTCCATCTTCCTGGATACTCACGACGCGGACCCAGTTCTCACTCCCATTGGGTGTCAGGTTTCTAGAGAACCCAATCACTGTCGTCACGG-TCCTGGTTCTAAAGTCCCCA-CGCACCCACCGGTACTC-AGATTCTCCCCAGACGCCGAGGATTG-CGGTCATGGCGCCCCGAACCCTCCTCCTGCTACTCTCGGGGACCCTGGCCCTGACCCAGACCTGGGCG-----------------------------------------------------------------------------------GGTGAGTGCGGGGCCGGGAGGGAAACGGTCTCTGCGGGGAGGAGGGAGGGGTCCGCCTGGGGTGGGCACAGGA-----------------------------------------------------------------------
i nomLeu3.chr1a                C 0 I 405
s rheMac8.chr4                 30407556 465 + 172585720 TTGCGACA-GAGC-GCT---TGGCACAGGAGTAGCG-GGGTCAGGGCGAAGTCCCAGAGCCCCAGGTATGGCTCTCAGAATCTCAGACTCAGAAAGC-GTGTGTGGACTG-GGG-AGGCCCAGCGTTGGGGATTCCCCATCTCCGAA-GGGTTTCTCTTCTCCCTCTCTCAACCTGCGTCTGGTCCTTCTTCCTGGATACTCACCGGGCGGCCCCAGTTCTCACTCCTATTGAGTGTCGGGTTTCTAGAGAAGTCAATCAATGTAGCCACGG-TCCCGGTTCTAAAGTTCCCA-CGCACCCACCAGTACTC-CGATTCTCCCCAGTCGCCAAGGATGG-G-GTCATGGCGCCCCGGACCCTCCTTCTGCTGCTCTCGGGAGCCCTGGTCCTGACCCAGACCTGTGCG-----------------------------------------------------------------------------------GGTGAGTGCGGGGTCGGGAGGGAAACAGCTTCTGTGGGGAGTAGCTAGGGGTCCGCCCGGCAGGGGCGCAGGA-----------------------------------------------------------------------
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   104430 461 +    231697 TTGAGACA-GAGC-GCT---TGGCACAGGAGGAGCG-GGGTCAGGGCGAAGTCCCAGGGCCCCAGGTGTGGCTCTCAGGGTCTCAGGCCCCGAAGGCGGTGTATGGATTG-GGG-AGGCCCAGCGTTGGGGATTCCCCATCTCCGCA---GTTTCTCTTCT---TCTCACAACCTGCGTCGAGTCCTTCTTCCTGGATACTCACGACGCGACCCTCGTTCTCACTCCCATTGGGTGTC-GGTTTCTAGAGACGCCAATCAGCGTCGCCGCAG-TCCCGGTTCTAAAGTCCCCA-CTCACCCACCAGGACTC-AGATTCTCCGCAGACGCCAAGGATGGCG-ATCATGGCGCCCCGAACCCTCCTCCTGGTGCTCTCAGGGGCCCTGGCTCTGACCCAGACCCGGGCG-----------------------------------------------------------------------------------GGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCTGCGGGGGGGAGCGAGGAGCCCGCCCGGCGGCGGCGCAGGA-----------------------------------------------------------------------
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         102826 461 +    243043 TTGAGACA-GAGC-GCT---TGGCACAGGAGGAGCG-GGGTCAGGGCGAAGTCCCAGGGCCCCAGGTGTGGCTCTCAGGGTCTCAGGCCCCGAAGGCGGTGTATGGATTG-GGG-AGTCCTAGCGTTGGGGATTCCCCATCTCCGCA---GTTTCTCTTCT---TCTGACAACCTGCGTCGTGTCCTTCTTCCTGGATACTCACGACGCGAACCCCGTTCTCACTCCCATTGGGTGTCGGGTTTCTAGAGACGCCAATCAGCGTCGCCGCGG-TCCCGGCTCTGAAGTCCCCA-CTCACCGACCAGGACTC-AGATTCTCCGCAGACGCCCAGGATGGCG-GTCATGGCGCCCCGAACCCTCCTCCTGGTGCTCTCCGGGGCGCTGGCCCTGACCCAGACCTGGGCC-----------------------------------------------------------------------------------GGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCGGCGGGGAGGAGCGAGGGGACCG-CAGGCGGGGGCGCAGGA-----------------------------------------------------------------------
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          19115 466 -    863181 TTGAGACA-GAGC-GCT---TGGCACAGGAGGAGCG-GGGTCAGGGCGACGTCCCAGGGCCCCAGGCGTGGTTCTCAGAATCTCAGGCTCAGAAAGCGGTGTGTGGATTG-GGG-AGGCCCAGCGTTGGGGATTCCCCATCTCCGAA-GGGTTTCTCTTCTCCCTCTCTCAACCTGCGTCTGGTCCTTCTTCCTGGATACTCACCGGGCGGCCCCAGTTCTCACTCCTATTGAGTGTCGGGTTTCTAGAGAAGTCAATCAATGTAGCCAGGG-TCCTGGTTCTAAAGTTCCCA-CGCACCCACCAGGACTC-CGATTCTCCCCAGTCGCCAAGGATGG-G-GTCATGGCGCCCCGAACCCTCCTTCTGCTGCTGTTGGGAGCCCTGGGCCTGACCCAGACCTGTGCG-----------------------------------------------------------------------------------GGTGAGTGCGGGGTCGGGAGGGAAACAGCCTCTGTGGGGAGTAGCTAGGGGTCCGCCCCGCGGGGGCGCAGGA-----------------------------------------------------------------------
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29201846 464 -  71996105 TTGAGACA-GAGC-GCT---TGGCACAGGAGGAGCG-GGGTCAGGGCGAAGTCCCAGAGCCCCAGGCATGGCTCTCAGAATCTCAGGCTCAGAAAGCGGTGTGTAGATTG-GGG-AAGCCCAGCCTTGGGGATTCCCCATCTCCGAA-GGGTTTCTC-TCTCCCTCTCTCAACCTGCGTCTGGTCCTTCTTCCTGGATAATCACCGGGCGGCCCCAGTTCTCACTCCCATTGAGTGTCAGGTTTCTAGAGAAGTCCATCAATGTAGCCACGG-TCC-GGTTCTAAAGTTCCCA-CGCACCCACCAGGACTC-CAATTCTCCCCAGTCGCCAAGGATGG-G-GTCATGGCGCCCCGGACCCTCCTGCTGCTGCTCTTGGGAGCCCTGGCCCTGACCCCGACTTGTGCG-----------------------------------------------------------------------------------GGTGAGTGCGGGGTCGGGAGGGAAACAGCCTCTGTGGGGAGTAGCTAGGGGTCCGCCCGGCGGGGGCGCAGGA-----------------------------------------------------------------------
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1           9789 549 +    273075 TTGAGACA-GAGC-GCT---TGGCACAGGAGGAGCG-GGGTCAGGGCGACGTCCCAGGGCCCCAGGCATGGCTCTCAGAATCTCAGGCTCAGAAAGCGGTGTGTGGATTG-GGG-AGGCCCAGCGTTGGGGATTCCCCATCTCCGAA-GGGTTTCTCTTCTCCCTCTCTCAACCTGCGTCTGGTCCTTCTTCCTGGATACTCACCGGGCGGCCCCAGTTCTCACTCCTATTGAGTGTCGGGTTTCTAGAGAAGTCAATCAATGTAGCCAGGG-TCCTGGTTCTAAAGTTCCCA-CGCACCCACCAGGACTC-CGATTCTCCCCAGTCGCCAAGGATGG-G-GTCATGGCGCCCCGAACCCTCCTTCTGCTGCTGTTGGGAGCCCTGGGCCTGACCCAGACCTGTGCGGGTGAGTGCGGGGTCGGGAGGGAAACAGCCTCTGTGGGGAGTAGCTCTGTCTCTTATACACATCTAGATGTGTATAAGAGACAGGTGAGTGCGGGGTCGGGAGGGAAACAGCCTCTGTGGGGAGTAGCTAGGGGTCCGCCCCGCGGGGGCGCAGGA-----------------------------------------------------------------------
i manLeu1.NW_012101121v1       I 510 C 0
s colAng1.NW_012115566v1        2820770 456 -   3067355 TTGAGACA-GAAT-GCT---TGGTACAGGAGTAGCGAGGGGCAGGGCAAAGTCCCAGGGCCCAAGGCTTGGCTCTTAGGGTCTCAGGACCTGAGGGCAGTGTCTGGGTTGCGGG-ACACTCAGCGTTAGGGATTCCTCA-CTCTGCA---GTTTCCCTTCTCAGTTT--CGACCTGTGTCAGGTCCTTCTTGCTGGATTCTCATGACGCGGCGCCACTTCTCACTGCTATTGGGTGTCAAGTTTCTAGAGCAGTCAATCAGCGTCGCCACGGCTCTCCATTATAAAGTCCTCG-CGGCCCCACCGGGCCTC-AGAATCTTCCCAGAGTGGGAGGATGC-G-GTCATGGCGCCCCGAACTCTCCTCCTGCTGCTCTTAGGGACCCAGGCCCTGACCGAGACCTGGGCA-----------------------------------------------------------------------------------GGTGAGTGAGGGATCGCTAGGGAAACGACCTCTGCAGGGAGGAGCGAGGGGTCCG--------GGGCGCAGGA-----------------------------------------------------------------------
i colAng1.NW_012115566v1       C 0 C 0
s calJac3.chr4                 30143919 459 + 171630274 GTGTGACA-AAGAGGCT---TGGTGACGGAGAAGAG-GGATCAGGACAAAGTCCTAGTTCC-CGGGCGTGACTCTCGGGGTCTCAGGCGCCTAGGGCCCTGTCGGTATTG-GGGAAAGTGCAGTGTTGGGGATTCCCCACTCCCCT--GAATTTCACT------TCTCCCAACC--TGTCAGGTCTTTCTTCCTGGATACTCATGACGCCTCCCCAGTTCTCACTCCCATTGGGAGACGGGTTTCTAGCTAAGCCAATCAGCGTCGCCGAGG-TCCCGGTTCTGAAGCTCCCA-GACGCCTACCTGGACTCAAGATTCTCCCCAGACGCCGAGGATTG-G-GTCATGGCGCCCCGAATCCTCCTTCTGCTGCTCTCGGGGGCCCTTGTCCTGACTAAGACCTGGGCG-----------------------------------------------------------------------------------GGTGAGTGCGGGGTCGGGAGGAAAACGGCCTCTGCGGGGAGGAGCGAGGGGACCGCCCGGCTGGGGCGCAGGA-----------------------------------------------------------------------
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                23533 444 +    187130 TTGAGACA-GAGC-GCT---TGGCACAGGAGAAGCG-GGGTCAGGGCGAAGTCCCAGGGCCTCAGGGGTGGCTCTGACGGTCTC-GACCCCGACGGCAGTGTATGGATTG-GGG-AGGCGCAGCGTTGACGGTCCCCGACAGCTGC---AGTTTCCCTTCC---TCTCCCAAACTGTGTCGGGTTCTTCTTCCTGGATACTCATGACGCGAACCCAGTTCCCACTCCCATTGGGTGCCGGGTTTCTAGAGAAGCCAATCAGCGTCGCCGCGG-TCCCGGTTCTGAAGTCTCCA-GTCACCCACCCCGACTC-CGATCCTTCCCAGACGCCGAGGATGA-G-GTCATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCGGGGGCCCTGGCCCTGACCGAGACCCGGGCG-----------------------------------------------------------------------------------GGTGAGTGCGGGGTCGGGAGAGAAACGGTCT---------------GGACGCTCGCCGGGTGAGAGCGCAGA------------------------------------------------------------------------
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         357710 463 -   1771730 TTGAGACA-GAGC-GCT---TGGCACAGGGGAAGCG-AGGTCAGGGCGAAGTCCCAGGGCTCCAGGCGTGGCTCTCAGGGTCTCAGGCCCCGAAGGCCGTATGTGGGTTG-GGG-AGGCTCAACGTTGGGGATTCCCCATCTCCGCA-GAGTTTCTCTTCC---TCTCCCAACCAGTGTTGGGTCCTTCTTCCTGGATACTCATGACGCGGACCCAGTTCCTACTCCCATTGGGTG-TGGGTTTTTAGAGAAGTCAATCAGCGTCGCCGCGG-TCCCGGTTCTAAAGTCCCCA-GTCACCCACCCGGACTC-AGATTCTCCCCAGACACCGAGGATGGCG-GTCATGGGGCCCCGTACCCTCCTTTTGCTGCTCTTGGGGGTCCTGTCCCTGACCGAGAGCCGGGCG-----------------------------------------------------------------------------------GGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCTGTGGGGAGCAGCCAGGGGCCTGCTCGGTGGGGAGGCAGGA-----------------------------------------------------------------------
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          96785 463 -    383796 TTGAGACA-GAGC-GCT---TGGCACAGGAGGAGCG-GGATCAGGACGAAGTCCCAGGTCCCCAGGCGTGGCTCTCAGGGTCTCAGGCGCGGAAGGCGGTGTTTGGATTG-CGG-AGGCGCAGCTTTGGGGATTCCCCATCTCCGCA-GAGTTTCTCTTCC---TCTCCCAACCTGTGTCGGGTCCTTTTTCCTGGCTACTCACGACGCAGACCCAGTTCTCACTCCCATTGGGTGCCGGGTTTCTAGAGAATCCAATCAGCGTCGCCGCGG-TCCCGGCTATAAAGTCCCCA-GTCACCCACCCGGACTC-AGAGCCTCCCCAGAGGCCGAGGATGGCG-GTCATGGAGCCCCGAACCCTCCTGCTGCTGCTCTCGGGGGCCCTGTTCCTGACCGAGACCCGGGCG-----------------------------------------------------------------------------------GGTGAGTGCGGGGTCGGGAGGGAAACAGCCTCTGT-GGTAGGAGCGAGGGGCCCGCCCGGCGGGGACGCAGGA-----------------------------------------------------------------------
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16823669 464 -  18854210 GTGTGACA--AAC-ACTCCGTGGTGCAGGAGAAGCA-GGGTCAGGGCAAAGCCCCAGGTTC-TGGGCGTGGCTTTCAGGGTCTCAGGC-CTGAGAGCGGTGT-CGGGGCG-GGG-AAGCTCAGTGCTGGGGATTCCCCGTCTCCTCA-AAGTTTCGTCTCTTCCTCCGCCAACCCTGCTCCGGTCCTTCTTCCTGGATACCGCTGACGT-GCACCAGCTCTCACTCCCATTGGGTGT-GGGTTTCTAGAGAAGCCAATCAGCGTCGCCGCGGTTCCCGGTTATTAAGTCTCCT-CAGAGCTACCCGGACTC-AGCTTCTCCTCAGACTCTGAGGATGGGG-GTCACGGCGCCCCGAACCCTCCTCCTGCTGCTGTCGGCGGCCCTGGTCCTGACCGAGAGCTGGGCG-----------------------------------------------------------------------------------GGTGAGTGCGGGGTCGGGAGGCCAACGGCCTCTGCGGGGAGG-GCGAGGGGACCACCCGGCGGGGATGCAGGT-----------------------------------------------------------------------
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  933012 489 +  72498081 GAGTGACAAGAGC-GCT----------------GTG-------GGGCAAGGTCTCAGGACCCCGGGC-TGCCTCTCAGGCTCTCATGCCCC-AGGGCGG-GTCCGGGGCG-GGG-ACGCTCAG-GCTCGGGAGTCCCCACCTCCCCGGGGATTTCACTTCT---TCTCCCAACCTGGCTCTGGGCCCCCTGCCTGGAGACTCATGACGCAGCCCCAGCGCGCACTCCCATTGGGTGCAGCCTTTCTGGAGGAGCCAATCAGCGGCACCGGGT-CCCGGGCTCTGAAGTCCACACCAGAACCGCCAGGACGC-AGCTGCTCCACCGACCCTAAAGGTCTGG-GCTATGGTGCCCGGAACCCTAGCCCTGCTGCTGTCGGGGGCCCTGGCCGTGACCCTGACCCGGGCG-----------------------------------------------------------------------------------GGTGAGTGCGGG--CGGGA------------------------GCGAGGGGACCGGCGGGCGGGGACGCGGGACCCCGGGAAGccgcctctccgccgcccccggcccctcccgcctccgccccgccccgggcatctcccctggg
i canFam3.chr12                C 0 C 0

a score=46575.000000
s hg38.chr6_GL000254v2_alt      1055028 6 +   4827813 ACCCGG
s panTro5.chr6                 30020673 6 + 175400573 ACCCGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30251356 6 + 173848474 ACCCGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6053711 6 +   6154872 ACCCGG
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30408021 6 + 172585720 ACCCGG
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   104891 6 +    231697 CCCGGG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         103287 6 +    243043 CCCGGG
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          19581 6 -    863181 ACCCGG
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29202310 6 -  71996105 ACCCGG
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          10338 6 +    273075 ACCCGG
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2821226 6 -   3067355 CCTGGG
i colAng1.NW_012115566v1       C 0 C 0
s calJac3.chr4                 30144378 6 + 171630274 CCCCGG
i calJac3.chr4                 C 0 I 1
s saiBol1.JH378364                23977 5 +    187130 -CCCGG
i saiBol1.JH378364             C 0 I 834
s cebCap1.NW_016107755v1         358173 6 -   1771730 CCTGGG
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          97248 6 -    383796 CCCGGG
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16824133 5 -  18854210 -CCGGG
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  933501 6 +  72498081 ccccgg
i canFam3.chr12                C 0 C 0
e nomLeu3.chr1a                74723024 405 + 122973662 I

a score=2981694.000000
s hg38.chr6_GL000254v2_alt      1055034 368 +   4827813 TTGCGGTGCCGGGAGGAGGGTCGGGAGGGTCTCA--GCC--CCCTCCTTG--CTCCCAGGCTTCCACTCCTTGAGGTATTTCCACACCACCATGTCCCGGCCCGGCCGCGCGGAT-CCCCGCTTCCTCTCCGTGGGCGACGTGGACGACACGCAGTGCGTGCGGCTCGACAGCGACGCCACGAGTCCCAGGATGGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCGGAATATTGGGAAGAGGAGACAGGGACCGCCAAGGCCAAAGCACAGTTTTACCGAGTGAACCTGCGGACCCTGAGCGGCTACTACAACCAGAGTGAGGCCTGTGAGTGACACCGGCCGGGGGCGCAGGTCACTACCCCTCCACATC
s panTro5.chr6                 30020679 363 + 175400573 TTGCGGTGCCGGGAGGAGGGTCGGGAGGGTCTCA--GCC--CCCTCCTTG--CTCCCAGGCTTCCACTCCTTGAGGTATTTCCACACCACCATGTCCCGGCCCGGCCACGCGGAT-CCCCGCTTCCTCTCCGTGGGCGACGTGGACGACACGCAGTGCGTGCGGCTCGACAGCGACGCCACGAGTCCCAGGATGGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCGGAATATTGGGAAGAGGAGACAGGGACCGCCAAGGCCAAAGCACAGTTTTACCGAGTGAACCTGCGGACCCTGAGCGGCTACTACAACCAGAGTGAGGCCTGTGAGTGACACCGGCCGGG-----AGATCACTACCCCTCCACATC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30251362 363 + 173848474 TTGCGGTGCCGGGAGGAGGGTCGGGAGGGTCTCA--GCC--CCCTCCTTG--CTCCCAGGCTTCCACTCCTTGAGGTATTTCCACACCACCATGTCCCGGCCCGGCCACGCGGAT-CCCCGCTTCCTCTCCGTGGGCGACGTGGACGACACGCAGTGCGTGCGGCTCGACAGCGACGCCACGAGTCCCAGGATGGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCGGAATATTGGGAAGAGGAGACAGGGACCGCCAAGGCCAAAGCACAGTTTTACCGAGTGAACCTGCGGACCCTGAGCGGCTACTACAACCAGAGTGAGGCCTGTGAGTGACACCGGCCGGG-----AGATCACTACCCCTCCACATC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6053717 368 +   6154872 TTGCGGTGCCGGGAGGAGGGTCGGGAGGGTCTCA--GCC--CCCTCCTTG--CTCCCACGCTTCCACTCCTTGAGGTATTTCCACACCACCATGTCCCGGCCCGGCCGCGCGGAT-CCCCGCTTCCTCTCCGTGGGCGACGTGGACGACACGCAGTGCGTGCGGCTCGACAGCGACGCCACGAGTCCCAGGATGGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCGGAATATTGGGAAGAGGAGACAGGGACCGCCAAGGCCAAAGCACAGTTTTACCGAGTGAACCTGCGGACCCTGAGCGGCTACTACAACCAGAGTGAGGCCTGTGAGTGACACCGGCCGGGGGCGCAGATCACTACCCCTCCACATC
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30408027 370 + 172585720 TTGCGGTGCCAGGAGGAGGGTCGGGAGGGTCTCAGCGCC---CCCCCTCG--TCCACAGGCTTCCACTCCTTGAGGTATTTCCACACCGCCACGTCCCGGCCCGGCCGCGGGGTGCCCCCGCTTCATCTCCATGGGCTAAGTGGACGACACGCAGTTCGTGCGGTTGGACAGCGACGCCGCGAGTCCTAGGATGGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCGGAATATTGGGAGGAGAAGACAGGGACCGCCAAGACCAACGCACAGTTTTACCGAATGAACCTGCGGACCCTGAGCGGCTACTAGAACCAGAGCGAGGCCTGTGAGTGACACCGGCCGGGGGCGCAGGTCACTACCCCTGCACATC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   104897 367 +    231697 GAACCGCGCGGGGAGGAGGGTCGGGCGGGTCTCA--GCC---TCTCCTCG--CCCCCAGGCTCGCACTCCATGAGGTATTTCTACACCTCCATGTCCCGGCCCGGCCGCGGGGAG-CCCCGCTTCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGTCCGGAGTATTGGGACCGGGAGACACGGAACATGAAGACCGCGACACAGAATGCCCCAGTGGCCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGTCGGTGAGTGACCGCGGCCCGGGGCGCAGGTCACGACCCCTCCGCATC
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         103293 367 +    243043 GAGCCGCGCGGGGAGGAGGGTCGGGCGGGTCTCA--GCT---TCTCCTCG--CCCCCAGGCTCCCACTCCATGAGGTATTTCTACACCTCCATGTCCCGGCCCGGCCGCGGGCAG-CCCCGCTTCTTCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGAGAGTCCGAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCGGGAGGGGCCGGAGTATTGGGACCGGGAGACACGGATCATGAAGACCGCGACACAGACCTACCGAGAGAACCTGCGGACCGCGCTCCGCTACTACAACCAGAGCGAGGCCGGTGAGTGATCCCGGCCCGGGGCGCAGGTCACGACCCCTCCCCATC
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          19587 371 -    863181 TTGCGGTGCCGGGAGGAGGGTCGGGAGGGTCTCA--GCCACACCCCCCCG--CCCCCAGGCTTCCACTCCTTGAGGTATTTCCACACCGTCACGTCCCGGCCGGGCCGCGGGGTGCCCCGGCTTCATCTCCATGGGCTAAGTGGACGACACGCAGTTCGTGCAGTTCGACAGCGACGCGGCGAGTCCTAGGATGGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCGGAATATTGGGAGGAGAAGACAGGGACCGCCAAGACCAACGCACAGTTTTACCGAATGAACCTGCGGACCCTGACCGGCTACTAGAACCAGAGCGAGGCCTGTGAGTGACACCAGCCGGGGGTGCAGGTCACTACCCCTCCACATC
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29202316 368 -  71996105 TTGCGGTGCCGGGAGGAGGGTCGGGAGGGTCTCA--GCC---CCTCCTCG--CCCCAAGGCTTCCACTCCTTGAGGTATTTCCACACCGCCACGTCCCGGCCCGGCCGCGGGTTGCCCCCGCTTTATCTCCATGGGTTAAGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGTCCTAGGATGGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCGGAATATTGGGAGAAGAAGACAGGGACCGCCAAGACCAACGCACAGTTTTACCGAATGAACCTGCGGACCCTGAGCGGCTACTAGAACCAGAGCGAGGCCTGTGAGTGACACCGGCCGGGGGCGCAGGTCACTACCCCTGCACATC
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          10344 370 +    273075 TTGCGGTGCCGGGAGGAGGGTCGGGAGGGTCTCA--GCCACACCTCCCCG--CCCCCAGGCTTCCACTCCTTGAGGTATTTCCACACCGTCACGTCCCGGCCGGGCCGCGGGGTTCCCCCGCTTCATCTCCATGGGCTAAGTGGACGACACGCAGTTCGTGCGGTTGGACAGCGACGCCGCGAGTCCTAGGATGGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCGGAATATTGGGAGGAGAAGACAGGGACCGCCAAGACCAATGCACAG-TTTACCGAATGAACCTGCGGACCCTGAGCGGCTACTAGAACCAGAGCGAGGCCTGTGAGTGACACTGGCCGGGGGCGCAGGTCACTACCCCTCCACATC
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2821232 366 -   3067355 GAGCCGCGCCGGGAGGAGGTTCGGGTGGATCTCA--GCC---CCGCCTCG--CCCCCAGGCTCCCACTCCTTCAGTTATTTCCACACCGCCGTGTCCCGGCCTGGCCGCGGGGAG-CCCCGGTACCTCGAAGTTGGCTACGTGGACGACACGCAGTTCGTGCTGTTCGACAGCGACGCCGCGAGTCCTAGGATGGAGCCGAAGGTGCCGTGGGTGGAGCAGGAGGAGCCGGAGTATTGGGAACTGCACACAGAGCACGCCAAGGCCCACGCACGGCTTTTCCGAGTGTGGCTGCGGACCCTGCTCCGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCCTGGCCT-GGGCACAGATCACGATCCCTCCTCATC
i colAng1.NW_012115566v1       C 0 C 0
s calJac3.chr4                 30144385 362 + 171630274 ---ATCCAGTGGGAGGAAGGTCGGGCAGGTCTCA--GCC---CCTCCTTG---CCCCAGGCTCCCACTCCATGAGGTATTTCTGCACTGCCGTGTCCCGGCCCGGCCGCGGGGAG-CCCCGCTTCATCTCTGCGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCTGCGAGTGGGAGAGAGGAGCCGCGGGCGCCGTGGATGGAGCAGGAAGGGCCGGAGTATTGGGACCGTGAGACACTGACCCTCAGGGCCAGCGCGCAGACTCACCGGGGGAACCTGCGGACCCTGCGTGGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCCCGGCCCCGGGCGCAGATCACGG-CCCTCCTCATC
i calJac3.chr4                 I 1 C 0
s cebCap1.NW_016107755v1         358179 365 -   1771730 AAGCCGCGCCGGGAGGAGTGTC-GGCGGGTCTCA---CC---CCTCCTCG--CCCCCAGGCTCCCACTCCATGAGGTATTTGTACACCTTCATGTCCCGGCCCGGCCGCGGGGAG-CCCCGGTACATCGCAGTGGGCTACGTGGACGACACGGAGTTCGTGCGGTTCGACAGTGACGCCGCGATTCCAAGGATGGAGCCGCGGGCGCAGTGGATGGAGAAGGAGGGGCCGGAGTATTGGGAGGAGCAGACACGGAGAGTCGAGGCCGCCGCACAGAGTTCGCGAGTGGCTCTGCGGGTCCTGCGCGGCTTCTACAACCAGAGCGAGGCCGGTGAGTGACCCCGGCCAGGGGCGCAGGTCACGACCCCTCCCCATC
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          97254 367 -    383796 GAGCCGCGCCGGGAGGAGGGTCGGGTGGGTCTCA--GCC---CCTCCTCG--CCCCCAGGCTCCCACTCCATGAGGTATTTCTACACCTCCGTGTCCCGGCCCGGCCGCGGGGAG-CCCCGCTTCATCTCTGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCTGCGAATCCGAGAGAGGAGCCGAGGGCGCCGTGGATGGAGAAGGTGGGGCCGGAGTATTGGGACCGGAGCACACGGATCCACAAGACCACCGCACAGGCTTTCCGAGTGAGCCTGCGGACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCCCGGCCCGGGGCGCAGGTTACGACCCCTCCACATC
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16824138 363 -  18854210 GAGCCGCGTCGGGAGAAGGTCGCGCCGGGTCTCA--GCC---CCTCC-CG--CCCCCAGGCTCCCACTCCATGACGTATTTCTACACCGCCGTGTCCCGGCCCGGGCGCGGGGAG-CCCCGGTTCATCGCCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCGGGGAATCCGAGGATGGAGCCGCGGGCGCCGTGGGTAGAGCGGGAGGGGCCGGAGTACTGGGAGGAGCAGACACGGCGCGCCAAGGAGACAGCACAGACTTTCCGAGTGAACCTGAGGACTCTCCGCGGCTACTACAACCAGAGCGAGGACGGTGAGCGACCCCAGGCC-GGTCACAGGTCACGACCCCTCCCCG--
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  933507 360 +  72498081 gccccgcGGCGGGAGGGGGTCGGGCGGGGTCTCA--GCC-------CTCGGCTCCGCAGGCTCCCACTCCCTGAGGTATTTCTACACCTCCGTGTCCCGGCCCGGCCGCGGGGAC-CCCCGCTTCATCGCCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCGGCCACTGGGAGGATGGAGCCGCGGGCGCGGTGGATGGAGCAGGAGGGGCCGGAGTATTGGGACCGGCAGACGCGGACCATCAAGGAGACCGCACGGACTTTCCGAGTGGACCTGGACACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTGAGCGGCGCGGGCCCGGGGC-CAGGGCACGACCCC----CATC
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e nomLeu3.chr1a                74723024 405 + 122973662 I

a score=472006.000000
s hg38.chr6_GL000254v2_alt      1055402 56 +   4827813 CCCCACGGACCGCCCGGGTCTCCCCG-AGTCTCTGGGTCCGAGATCCACGCCGAGGC
s panTro5.chr6                 30021042 56 + 175400573 CCCCACGGACCGCCCGGGTCTCCCCG-AGTCTCTGGGTCCGAGTTCCACGCCGAGGC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30251725 56 + 173848474 CCCCACGGACCGCCCGGGTCTCCCCG-AGTCTCTGGGTCCGAGATCCACGCCGAGGC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6054085 56 +   6154872 CCCCACGGACCGCCCGGGTCTCCCCG-AGTCTCTGGGTCCGAGATCCACGCCGAGGC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74723429 57 + 122973662 CCCCACTGACGGGCCGGGTCGCCCCACAGTCTCCGGGTCCGAGATCCACCCCGAAGC
i nomLeu3.chr1a                I 405 C 0
s rheMac8.chr4                 30408397 56 + 172585720 CCCCACGGACAGTCCGGGTCTCCCCG-AGTCTTCGGGTCCGAGATCCACCCCGAGGC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   105264 56 +    231697 CCCCACGGACGGCCCGCGTCGCCCCG-AGTCTCCGGGTCCCAGATTCAACCCGAAGC
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         103660 56 +    243043 CCCCACGGACGGCCCGCGTCGCCCCG-AGTCTCCGGGTCCCAGATACACCCCGAAGC
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          19958 56 -    863181 CCCCACGAACAGTCCGGGTCTCCCCG-AATCTTCGGGTCCGAGATCCACCCCGAGGC
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29202684 56 -  71996105 CCCCACGGACAGTCCGGGTCTCCCCG-AGTCTTCGGGTTCGAGATCCACCCCGAGGC
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          10714 56 +    273075 CCCCACGGACAGTCCGGGTCTCCCCG-AGTCTTCGGGTTCGAAATCCACCCCGAGGC
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2821598 55 -   3067355 CCCTACGGACGGCCCGGGTCG-CTCG-AGTCTCCGGGTCTGAGATCCACCCCGAGGC
i colAng1.NW_012115566v1       C 0 I 200
s calJac3.chr4                 30144747 54 + 171630274 CCCCACGGACGGTCCGCGTCGCC-CG-GGTCTCCGGGT-CAAGATCCACACTGAGGC
i calJac3.chr4                 C 0 C 0
s cebCap1.NW_016107755v1         358544 56 -   1771730 CCGCAAGGAAGGCCTGGGTCGCCGTG-AGTCTCCGGGTCCGAGATTCACCCAGAGGC
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          97621 56 -    383796 CCGCACGGACGGCCCGGGTCGCCCCG-AGTCTCCGGGTCCGAGATCAACCCTGAGGC
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16824501 56 -  18854210 CCCCACAGTCAACCCCGAGTCGCCGG-ATTTGTAGGGTCCGAGGGTCACCCCGAGGC
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  933867 54 +  72498081 --CCCCCGACCGGCCGGGTCGCCCCG-AGGGTCCGGGTCCGGGCGTCACCCCGAGTC
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982 834 +    187130 I

a score=520374.000000
s hg38.chr6_GL000254v2_alt      1055458 64 +   4827813 AGCGGGACCTG-----------GAGACCCTTGACCCGGGAGAGGCC--CAGGAGCCGTTAC--CCGGTTTCATTTTCAG
s panTro5.chr6                 30021098 64 + 175400573 AGCGGGACCTG-----------GAGACCCTTGACCCGGGAGAGGCC--CAGGAGCCGTTAC--CCGGTTTCATTTTCAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30251781 64 + 173848474 AGCGGGACCTG-----------GAGACCCTTGACCCGGGAGAGGCC--CAGGAGCCGTTAC--CCGGTTTCATTTTCAG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6054141 64 +   6154872 AGCGGGACCTG-----------GAGACCCTTGACCCGGGAGAAGCC--CAGGAGCCGTTAC--CCGGTTTCATTTTCAG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74723486 64 + 122973662 CGCGGGACCCC-----------GAGACCCTTGACCCGGGAGAGGCC--CAGGCGCCTTTAC--CCGGTTGCATTTTCAG
i nomLeu3.chr1a                C 0 I 7
s rheMac8.chr4                 30408453 64 + 172585720 CGCGGGACCCG-----------GAGACCCTTGACCGGGGAGCAGCC--TAGGAGCCGTTAC--CCGGTTTCATTTTCAG
i rheMac8.chr4                 C 0 I 6
s macFas5.chr4_KE145577_random   105320 64 +    231697 CGCGGGACCCG-----------GGGACCCTTGACCCGGGAGAGCCC--CAGGCGCCTTTAC--CCGGTTTCATTTTCAG
i macFas5.chr4_KE145577_random C 0 I 6
s macNem1.NW_012013156v1         103716 64 +    243043 CGCGGGACCCC-----------GAGACCGTTGACCCGGGAGAGCCC--CAGGCGCCTTTGC--CCGGTTTCATTTTCAG
i macNem1.NW_012013156v1       C 0 I 6
s cerAty1.NW_012002535v1          20014 64 -    863181 CGCGGGACCCG-----------GAGACCCTTGATCGGGGAGAAGCC--TAGGAGCCGTTAC--CCGGTTTCATTTTCAG
i cerAty1.NW_012002535v1       C 0 I 6
s chlSab2.chr17                29202740 64 -  71996105 CGCGGGACCCG-----------GAGACCCTTGACCGGGGAGCAGCC--TAGGAGCCGTTAC--CCGGTTTCATTTTCAG
i chlSab2.chr17                C 0 I 6
s manLeu1.NW_012101121v1          10770 64 +    273075 CTCGGGACCCG-----------GAGACCCTTGACCGGGGAGAAGCC--TAGGAGCCGTTAC--CCGGTTTCATTTTCAG
i manLeu1.NW_012101121v1       C 0 I 6
s colAng1.NW_012115566v1         161294 64 +   3067355 CGCGGGACCCC-----------GAGACCCTTGACCCGGGAGAGCCC--CAGGCGCCTTTAC--CCGATTTCCTTTTTAG
i colAng1.NW_012115566v1       n 200 I 6
s calJac3.chr4                 30144801 66 + 171630274 TACAGGACCCGC---------CCAGACCCTTGACCCTAGAGAGCCC--CAGACGCCTTTAC--CCAGTTTCCTTTTCAG
i calJac3.chr4                 C 0 I 6
s cebCap1.NW_016107755v1         358600 66 -   1771730 TGCGGGACCCGC---------CCAGACCCTCGACCCCGGAAAAACT--CGGGCGCCTTTAC--CCGGTTTCATTTTCAG
i cebCap1.NW_016107755v1       C 0 I 73
s aotNan1.NW_018496904v1          97677 66 -    383796 TGCTGGACCTGC---------CCAGACCCTTGACCAGGGAGAAACT--CGGTCGCCTTTAC--CCGGTTTCATTTTCAG
i aotNan1.NW_018496904v1       C 0 I 6
s otoGar3.GL873550             16824557 67 -  18854210 TGCGGGACCCC----------TGAGACCTTCGACCTGGGAAGGGCCCGCGGGGACTTTCAC--CCGGTTTCGTTTTCAG
i otoGar3.GL873550             C 0 I 6
s canFam3.chr12                  933921 75 +  72498081 --CGAGGCCCCCCACCCTAAACGGGTCCTCAGAGCCAGGAAGAGGC--CGTGCGCCCTTTCGAGCGGTTTTCCTTTCGG
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982 834 +    187130 I

a score=256601.000000
s hg38.chr6_GL000254v2_alt      1055522 40 +   4827813 -------CCAAAATCCCCGCA---------------GGTTGGTCCTggcgagggcggggctc-
s panTro5.chr6                 30021162 40 + 175400573 -------CCAAAATCCCCGCA---------------AGTTGGTCCTggcgggggcggggctc-
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30251845 40 + 173848474 -------CCAAAATCCCCGCA---------------AGTTGGTCCTggcgggggcggggctc-
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6054205 40 +   6154872 -------CCAAAATCCCCGCA---------------GGTTGGTCCTggcgggggcggggctc-
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74723557 39 + 122973662 -------CAGAAATCCCCGCG---------------GGTTGGTCGGGGCG-GGGCGGGACTC-
i nomLeu3.chr1a                I 7 C 0
s rheMac8.chr4                 30408523 40 + 172585720 -------CCAAAATCCCCGCA---------------GGTTGGTCGGGGTGGGGGTTGGACTT-
i rheMac8.chr4                 I 6 C 0
s macFas5.chr4_KE145577_random   105390 39 +    231697 -------CCAAAATGCCCGCG---------------GGTTggtcggggc-ggggcggggctc-
i macFas5.chr4_KE145577_random I 6 C 0
s macNem1.NW_012013156v1         103786 39 +    243043 -------CCAAAATCCCCGgg---------------ggttggtcggggc-ggggcggggctc-
i macNem1.NW_012013156v1       I 6 C 0
s cerAty1.NW_012002535v1          20084 40 -    863181 -------CCAAAATCCCTGCA---------------GGTTggtgggggcagggtcggggctc-
i cerAty1.NW_012002535v1       I 6 C 0
s chlSab2.chr17                29202810 40 -  71996105 -------CCAAAATCCCCGCA---------------GGTTGGTGGgggcgggggcggggctc-
i chlSab2.chr17                I 6 C 0
s manLeu1.NW_012101121v1          10840 40 +    273075 -------CCAAAATCCCTGCA---------------GGTTggtgggggcaggggcggggctc-
i manLeu1.NW_012101121v1       I 6 C 0
s colAng1.NW_012115566v1         161364 39 +   3067355 -------CCAAAATCCCCGCG---------------GGTTgggcggggc-ggggcggggctc-
i colAng1.NW_012115566v1       I 6 n 6
s calJac3.chr4                 30144873 40 + 171630274 -------CCCAAATCCCTGCA---------------GCTTGGTCTGGGCGGGGGCGGGGCTC-
i calJac3.chr4                 I 6 C 0
s aotNan1.NW_018496904v1          97749 35 -    383796 -------CCAAAATCCCCGCA---------------GGT-----TGGGCGGGAGCGGGGCTC-
i aotNan1.NW_018496904v1       I 6 C 0
s otoGar3.GL873550             16824630 38 -  18854210 -------ACAAAATCCCGGCG---------------GGTTGGTcggggc-ggggcggggcc--
i otoGar3.GL873550             I 6 C 0
s canFam3.chr12                  933996 62 +  72498081 TTTGAACTTAGAAGTCTTGCGGTCCCGGGACTACTCGGGTGTTCACCGC-GGGGCGGGGCCTC
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e cebCap1.NW_016107755v1         358666 73 -   1771730 I

a score=116981.000000
s hg38.chr6_GL000254v2_alt      1055562 16 +   4827813 --ggt----gggcggggctggc
s panTro5.chr6                 30021202 16 + 175400573 --ggt----gggcggggctggc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30251885 16 + 173848474 --ggt----gggcggggctggc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6054245 16 +   6154872 --ggt----gggcggggctggt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74723596 16 + 122973662 --GGG----GGACGGGGCTGAC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30408563 16 + 172585720 --GGT----GGGCGGGGCTGAC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   105429 15 +    231697 --cgg----ggac-gggctgac
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         103825 15 +    243043 --cgg----ggac-gggctgac
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          20124 16 -    863181 --ggt----gggcggggctgac
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29202850 16 -  71996105 --ggt----gggcagggctgac
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          10880 16 +    273075 --ggt----gggcggggctgac
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2821853 16 -   3067355 --GGT----GGGCGGCGCTGAC
i colAng1.NW_012115566v1       I 200 C 0
s calJac3.chr4                 30144913 16 + 171630274 --GGT----GGATGGGTCTGAC
i calJac3.chr4                 C 0 C 0
s aotNan1.NW_018496904v1          97784 16 -    383796 --GGC----GGGCGGAGCTGAC
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16824668 16 -  18854210 --ggt----gggcgcggcTGAC
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  934058 22 +  72498081 GGGGCCTCGGGGCGGAGCTGAC
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e cebCap1.NW_016107755v1         358666 73 -   1771730 I

a score=1356767.000000
s hg38.chr6_GL000254v2_alt      1055578 144 +   4827813 cgcgggggcggggccagggTCTCACACCCATCTAGAGGATGTCTGTCTGCGACGTGGGGTCGGACGGGCGCCTACTCCGCGGGTATCACCAGCTTGCTTACGATGGCAAGGATTACATCGTCCTGAACGAGGACCTGTGCTCCT
s panTro5.chr6                 30021218 143 + 175400573 cgcgggggcggggccagggTCTCACACC-ATCTAGAGGATGTCTGTCTGCGACGTGGGGTCGGACGGGCGCCTACTCCGCGGGTATCACCAGCTCGCTTACGATGGCAAGGATTACATCGTCCTGAACGAGGACCTGTGCTCCT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30251901 143 + 173848474 cgcgggggcggggccagggTCTCACACC-ATCTAGAGGATGTCTGTCTGCGACGTGGGGTCGGACGGGCGCCTACTCCGCGGGTATCACCAGCTCGCTTACGATGGCAAGGATTACATCGTCCTGAACGAGGACCTGTGCTCCT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6054261 143 +   6154872 cgcgggggcggggccagggTCTCACACC-ATCTAGAGGATGTCTGTCTGCGACGTGGGGTCGGACGGGCGCCTACTCCGCGGGTATCACCAGCTCGCTTACGATGTCAAGGATTACATCGTCCTGAACGAGGACCTGTGCTCCT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74723612 143 + 122973662 CGCGGGCGCGGGGCCAGGTTCTCACACC-ATCCAGATAATGTATGGCTGCGACATGGGGTCCGACGGGCGCTTCCTCCGCGGGTACCGGCAGGACGCCTACGACGGCAAGGATTACATCTCCCTGAACGAGGACCTGCGCTCTT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30408579 143 + 172585720 CGCGGGCGCAGGGCCAGGGTCTCACACC-ATCTATAGGATGCCTGGCTGCGACAAAGGGTCCGACGGGCGCCTTCTCCGGGAGTATCACCAGCTCGCCTACGAAGGCAGGGATTACATCGCCCTGAACCAGGACCCGTGCTCCT
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   105444 143 +    231697 cgcgggggcggggccagggTCTCACACC-TTCCAGAGGATGGTTGGCTGCGACCTGGGACCCGACGGGCGCCTCCTCCGCGGGTATGAACAGTACGCCTACGACGGCAGGGATTACATCGCCCTGAACGAGGACCTGCGCTCCT
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         103840 143 +    243043 cgcgggggcggggccagggTCTCACACC-ATCCAGAAGATGTACGGCTGCGACCTGGGACCGGACGGGCGCCTCCTCCGCGGATATAGCCAGTCCGCCTACGACGGCAGGGATTACATCGCCCTGAACGAGGACCTGCGCTCCT
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          20140 143 -    863181 cgcgggcgcagggccagggTCTCACACC-ATCTAGAGGATGCCTGGCTGCCACAAGGGGTCCGACGGGCGCCTCCTTCTGGAATATCACCAGCTCGCCTACGACGTCAGGGATTACATTGCCGGGCACCAGGACCTGTGCTCCT
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29202866 143 -  71996105 cgcgggcgcagggcCAGGGTCTCACACC-ATCTAGAGGATGCCTGGCTGCGACAAGGGGTCCGACGGGCGCCTCCTCCGGGAGTATCACCAGCTTGCCTACGACGGCAGGGATTACATCGCCCTGAACCAGGACCTGTGCTCCT
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          10896 143 +    273075 cgcgggcgcagggccagggTCTCACACC-ATCTAGAGGATGCCTGGCTGCGACAAGGGGTCCGACGGGCGCCTGCTTCGGGAATATCACCAGCTTGCCTAAGATGGCACGGATTACATCGCCCTGAACCAGGACCTGTGCTCCT
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2821869 143 -   3067355 TGCAGTGGTGGGGCCAGGGTCTCACACC-ATCCAGTGGATGTATAGCAGCGAAGTGGGGCCAGATGGGCGCTTTCTCCGAGGATATCACCAGTATGCCTACGATGGCAAGGATTACATCGCCCTGAATGAGGACCTGAGCTCCT
i colAng1.NW_012115566v1       C 0 I 343
s calJac3.chr4                 30144929 143 + 171630274 TGCGGGGTTGGGGCCAGGGTCTCACACC-CTCCAGACGACCTATGGCTGCGACCTGGGGCCTGATGGGCGCCTCTTCCGCGGGTATTACCAACATGCCTATGACGACAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCTT
i calJac3.chr4                 C 0 C 0
s cebCap1.NW_016107755v1         358739 143 -   1771730 CGCGGGAGCGGGGCCAGGGTCTCACACG-CTCCAGGCTACGTTTGGCTGCGACCTGGGGCCAAACCGGCGCCTCCTCTGCGGGCATGAACGGTTCGCCTACGACGGCAAGGATCACATCGCCCTGAACGAGGACCTGCGCTCCT
i cebCap1.NW_016107755v1       I 73 C 0
s aotNan1.NW_018496904v1          97800 143 -    383796 CGCAGGGGCGGGGCCAGGGTCTCACACC-TTCCAGAGGATGTATGGCTGCGACCTGGGGCCGGACGGGCGCCTTCTCCTCGGGTATGACCAGTCCGCCTACGACGGCAAGGACTACATCGCCCTGAACGAGGACCTGCGCTCCT
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16824684 143 -  18854210 CGCGGGGACGGGGACAGGGTCACACAGC-ATCCAGACGATGTACGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGTACATGCAGTTCGCCTACGACGGCGCCGACTACATCGCCCTGAACGAGGACCTGCGCTCCT
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  934080 142 +  72498081 CGCGGGGG-GGGGCCAGGGTCTCACACC-TTCCAGTGGATGTTTGGCTGTGACCTGGGGCCCGGCGGGCGCCTCCTCCGCGGGTACAGTCAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGCGCTCCT
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982 834 +    187130 I

a score=348395.000000
s hg38.chr6_GL000254v2_alt      1055722 42 +   4827813 TGACAGCCGCAGACA--------CGGCGGCTCAGATCACCCAGCTCAAGT
s panTro5.chr6                 30021361 42 + 175400573 TGACAGCCGCAGACA--------CGGCGGCTCAGATCACCCAGCTTAAGT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30252044 42 + 173848474 TGACAGCCGCAGACA--------CGGCGGCTCAGATCACCCAGCTTAAGT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6054404 42 +   6154872 TGACAGCCGCAGACA--------CGGCGGCTCAGATCACCCAGCTCAAGT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74723755 42 + 122973662 GGACCGCGGCGGACA--------CGGCGGCTCAGATCACCAAGCACAAGT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30408722 42 + 172585720 TGACCGCCACAGACA--------CGGCGGCTCAGATCACCCAGCTCAAGT
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   105587 42 +    231697 GGACCGCGGCGGATG--------TGGCGGCTCAGAACACCCAGCGGAAGT
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         103983 42 +    243043 GGACGGCCGCGGACA--------TGGCGGCTCAGAACACCCAGCGGAAGT
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          20283 50 -    863181 TGACCGCCGCAGACACGCAGACTCGGCGGCTCAGATCACCCAGCTCAAGT
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29203009 42 -  71996105 TGACCGCCGCAGACA--------GGGCAGCTCAGATCACCCAGCTCAAGT
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          11039 42 +    273075 TGACCGCCGCAGACA--------GGGCAGCTCAGATCACCCAGCTCAAGT
i manLeu1.NW_012101121v1       C 0 C 0
s calJac3.chr4                 30145072 42 + 171630274 GGACAGCGGCTGACA--------CGGCTGCTCAGATTACCCAGCGCAAGT
i calJac3.chr4                 C 0 C 0
s cebCap1.NW_016107755v1         358882 42 -   1771730 GGACCGCCGCGGACG--------CGCCGGCTCAGATCACCCAGCGCAAGT
i cebCap1.NW_016107755v1       C 0 I 169
s aotNan1.NW_018496904v1          97943 42 -    383796 GGACCGCCGCGGACG--------TGGCGGCTCAGATCACCCAGCGCAAGT
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16824827 42 -  18854210 GGACCGCGGCGGACC--------CGGCGGCTCAGAACACCCAGCGCAAGT
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  934222 42 +  72498081 GGACCGCGGCGGACG--------CGGCGGCGCTGATCACCCGGCGCAAGA
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e colAng1.NW_012115566v1        2822012 343 -   3067355 I

a score=80098.000000
s hg38.chr6_GL000254v2_alt      1055764 10 +   4827813 GGGAGGCGGC
s panTro5.chr6                 30021403 10 + 175400573 GGGAGGCGGC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30252086 10 + 173848474 GGGAGGCGGC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6054446 10 +   6154872 GGGAGGCGGC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74723797 10 + 122973662 GGGAGGCGGC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30408764 10 + 172585720 GGGAGGCTGC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   105629 10 +    231697 GGGAGGCGGC
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         104025 10 +    243043 GGGAGGCGGC
i macNem1.NW_012013156v1       C 0 I 8541
s cerAty1.NW_012002535v1          20333 10 -    863181 GGGAAGCTGC
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29203051 10 -  71996105 GGGAAGCTGC
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          11081 10 +    273075 GGGAAGCTGC
i manLeu1.NW_012101121v1       C 0 C 0
s calJac3.chr4                 30145114 10 + 171630274 TGTAGGCCGT
i calJac3.chr4                 C 0 C 0
s aotNan1.NW_018496904v1          97985 10 -    383796 GGGAGGCGGC
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16824869 10 -  18854210 GGGAGGCGGC
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  934264 10 +  72498081 GGGAGGCGGC
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e colAng1.NW_012115566v1        2822012 343 -   3067355 I

a score=-2310.000000
s hg38.chr6_GL000254v2_alt      1055774 1 +   4827813 -C
s panTro5.chr6                 30021413 1 + 175400573 -C
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30252096 1 + 173848474 -C
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6054456 1 +   6154872 -C
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74723807 1 + 122973662 -C
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30408774 1 + 172585720 -C
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   105639 1 +    231697 -G
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          20343 1 -    863181 -T
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29203061 1 -  71996105 -C
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          11091 1 +    273075 -C
i manLeu1.NW_012101121v1       C 0 C 0
s calJac3.chr4                 30145124 1 + 171630274 -C
i calJac3.chr4                 C 0 C 0
s aotNan1.NW_018496904v1          97995 1 -    383796 -C
i aotNan1.NW_018496904v1       C 0 I 67
s otoGar3.GL873550             16824879 1 -  18854210 -C
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  934274 1 +  72498081 A-
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e macNem1.NW_012013156v1         104035 8541 +    243043 I

a score=10038.000000
s hg38.chr6_GL000254v2_alt      1055775 4 +   4827813 CGGg
s panTro5.chr6                 30021414 4 + 175400573 CGGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30252097 4 + 173848474 CGGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6054457 4 +   6154872 CGGg
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74723808 4 + 122973662 GGTG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30408775 4 + 172585720 GGCG
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   105640 4 +    231697 GGTG
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          20344 4 -    863181 GGCG
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29203062 4 -  71996105 GGCG
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          11092 4 +    273075 GGCG
i manLeu1.NW_012101121v1       C 0 C 0
s calJac3.chr4                 30145125 4 + 171630274 CATG
i calJac3.chr4                 C 0 C 0
s otoGar3.GL873550             16824880 4 -  18854210 GGTG
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  934275 4 +  72498081 GGTG
i canFam3.chr12                C 0 I 44903
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e macNem1.NW_012013156v1         104035 8541 +    243043 I

a score=33840.000000
s hg38.chr6_GL000254v2_alt      1055779 7 +   4827813 gggcgga
s panTro5.chr6                 30021418 7 + 175400573 GGGTGGA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30252101 7 + 173848474 GGGTGGA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6054461 7 +   6154872 gggcgga
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74723812 7 + 122973662 AGGCGGA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30408779 7 + 172585720 AGGCGGA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   105644 7 +    231697 CGGCGGA
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          20348 7 -    863181 AGGCGGA
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29203066 7 -  71996105 AGGCGGA
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          11096 7 +    273075 AGGCGGA
i manLeu1.NW_012101121v1       C 0 C 0
s calJac3.chr4                 30145129 7 + 171630274 AGGCAAA
i calJac3.chr4                 C 0 C 0
s otoGar3.GL873550             16824884 7 -  18854210 AGGCGGA
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e macNem1.NW_012013156v1         104035 8541 +    243043 I

a score=7800.000000
s hg38.chr6_GL000254v2_alt      1055786 1 +   4827813 g
s panTro5.chr6                 30021425 1 + 175400573 G
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30252108 1 + 173848474 G
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6054468 1 +   6154872 g
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74723819 1 + 122973662 G
i nomLeu3.chr1a                C 0 I 52830
s rheMac8.chr4                 30408786 1 + 172585720 G
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   105651 1 +    231697 G
i macFas5.chr4_KE145577_random C 0 T 73590
s macNem1.NW_012013156v1         112576 1 +    243043 g
i macNem1.NW_012013156v1       I 8541 C 0
s cerAty1.NW_012002535v1          20355 1 -    863181 G
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29203073 1 -  71996105 G
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          11103 1 +    273075 G
i manLeu1.NW_012101121v1       C 0 C 0
s calJac3.chr4                 30145136 1 + 171630274 G
i calJac3.chr4                 C 0 C 0
s otoGar3.GL873550             16824891 1 -  18854210 G
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e colAng1.NW_012115566v1        2822012 343 -   3067355 I

a score=7800.000000
s hg38.chr6_GL000254v2_alt      1055787 1 +   4827813 g
s panTro5.chr6                 30021426 1 + 175400573 g
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30252109 1 + 173848474 g
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6054469 1 +   6154872 g
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74776650 1 + 122973662 g
i nomLeu3.chr1a                I 52830 C 0
s rheMac8.chr4                 30408787 1 + 172585720 g
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    32062 1 +    231697 g
i macFas5.chr4_KE145577_random T 73590 C 0
s macNem1.NW_012013156v1         112577 1 +    243043 g
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          20356 1 -    863181 g
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29203074 1 -  71996105 g
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          11104 1 +    273075 g
i manLeu1.NW_012101121v1       C 0 C 0
s calJac3.chr4                 30145137 1 + 171630274 G
i calJac3.chr4                 C 0 C 0
s otoGar3.GL873550             16824892 1 -  18854210 G
i otoGar3.GL873550             C 0 I 82017
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e colAng1.NW_012115566v1        2822012 343 -   3067355 I

a score=527797.000000
s hg38.chr6_GL000254v2_alt      1055788 130 +   4827813 ttcatcctcacagggataggcacctattagatgtggtgtggttttcctctctactcttagaccctcagccagtatca-----------ctattggcattcctgagccactggctcag----aatttcagtacattatctgcccgc
s panTro5.chr6                 30021427 130 + 175400573 ttcatcctcacagggataggcacctattagatgtggtgtggttttcctctctactcttagaccctcagccagtatca-----------ctattggcattcctgagccactggctcag----aatttcagtacattacctgcccgc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30252110 130 + 173848474 ttcatcctcacagggataggcacctattagatgtggtgtggttttcctctctactcttagaccctcagccagtatca-----------ctattggcattcctgagccactggctcag----aatttcagtacattacctgcccgc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6054470 130 +   6154872 ttcatcctcacagggataggcacctattagatgtggtgtggttttcctctctactcttagaccttcagccagtatca-----------ctattggcattcctgagccactggctcag----aatttcagtacattacctgcgcgc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74776651 144 + 122973662 ttcatcttcacaggattaggcacctattctgtg-ggtgggtttttctgtcctgctctcagacactcagccagcaccactctctgggggctgttcacattcctgatccgcaggctaggcggtgctcctagcccattatctgcctga
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30408788 130 + 172585720 ttcatcctcacaggggtaggtacctattcgatgtggtgtgtttttcctctctactctcagaccctcagccagtatca-----------ctattggcattcctgatccactggctcag----aatttcagtacattatctgcccgc
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    32063 130 +    231697 ttcatcctcacagggaaaggcacatattcaatgtggtgtggtttttctctctgctctcagaccttcagccagcatca-----------ctgtagacagttctgatccactggctcac----aatttcagtacattatttgcctgc
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         112578 130 +    243043 ttcgtcctcacagggataggcacctatccgatgtggtgtggttttcctctctgcgttcacaccctcagccagcatca-----------ctatctgcattcctgatcccctggctcag----aatttcagtacattatctgcccac
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          20357 130 -    863181 ttcatcctcacagggataggtacctattcgatgtggtgtgtttctcctctctactctcagaccctcagccagtatca-----------ctattggcattcctgatccactggctcac----aatttcagtgcattatctgcccgc
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29203075 130 -  71996105 ttcatcgtcacaggggtaggtacctattcgatgtgatatgtttttcctctctactctcagaccctcagccagtatca-----------ctattggcattcctgatccactggctcac----aattttagcacattatctgcccgc
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          11105 129 +    273075 ttcatcctcacaggggtaggtacctattcgatgtggtgtg-ttttcctctctactctcagaccctcagccagtatca-----------ctattgacattcctgatccactggctcag----aatttcagtacattatctgcccgc
i manLeu1.NW_012101121v1       C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e otoGar3.GL873550             16824893 82017 -  18854210 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I

a score=1305137.000000
s hg38.chr6_GL000254v2_alt      1055918 285 +   4827813 gggacacacctcagaggaaaggggatgaagcgtggtccatgaccatggcaccccctggtctt-------------------atcaccacctgcacctcccaggggctgccagccacacagagtcatggacaggtc-tctacagacacaacttagtgccagcttggatgaaaccctctgaggaatg-ggtgccatctttcaggatgtggtgcatgtattgaatcaaagatgtct---ctatagtgctgtgtttacagaaggaa-gaatacgtgggtccaaaaaccaagaagtagaagcaggtgtggctcca
s panTro5.chr6                 30021557 286 + 175400573 gggacacacctcagagggaaggggatgaagcgtgggccatgaccatggcatcccctggtctt-------------------atcaccacctgcacctcccaggggctgccagccacacagagtcatggacaggtc-tctacagacacaacttagtgccagcttggatgaaaccctctgaggaatg-gctgccatctttcaggatgtggtgcatgtattgaatcaaaggtgtct---ctatagtgctgtgttcacagaaggaaagaatatgtgggtccaaaaaccaagaagtagaagcaggtgtggctcca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30252240 285 + 173848474 gggacacacctcagagggaaggggatgaagcgtgggccatgaccatggcatcccctggtctt-------------------atcaccacctgcacctcccaggggctgccagccacacagagtcatggacaggtc-tctacagacacaacttagtgccagcttggatgaaaccctctgaggaatg-gctgccatctttcaggatgtggtgcatgtattgaatcaaaggtgtct---ctatagtgctgtgttcacagaaggaa-gaatacgtgggtccaaaaaccaagaagtagaagcaggtgtggctcca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6054600 285 +   6154872 gggacagacctcagagggaaggggatgaagcgtgggccatgaccatggcatcccctggtctt-------------------atcaccacctgcacctcccaggggctgccagccacacagagtcatggacaggtc-tctacagacacaacttagtgccagcttggatgaaaccctctgaggaatg-gctgccatctttcaggatgtggtgcatgtattgaatcaaaggtgtct---ctatagtgctgtgtttacagaaggaa-gaatacgtgggtccaaaaaccaagaagtagaagcaggtgtggctcca
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74776795 271 + 122973662 aggacccacttggcagggaaagtttcagtgttt---------ccatgg------ctgttcct-------------------atcaccatctgcaccacccaggggctgccagccacaagtaatgctggacaggtcttctacaggcacagctcagtgccagcatggaggaagcactctgaggggtg-ggtgccatccttcaggacatgatgcattgcttgaatcagagacatct---ctacagtgctgtgttctcaataggaa-gaacatgtgtgtccagaaatcaaaaggtggaagcaggtttggctcca
i nomLeu3.chr1a                C 0 T 47080
s rheMac8.chr4                 30408918 285 + 172585720 gggacacacctcagagggaaagggatgaagcgtgggccatgaccaaggcatctcctggtcat-------------------atcaccacctgcacctcccaggggctgccagccacacagagtcatggacaggtc-tccacagacacaacttagtaccagcttggatgaagccctctgaggaagg-ggggccagctttcaggatgtgctgcgcgtattaaatcaaagacgtcc---ctatggtgctgtgtttacagaaggaa-gaattcgtgggtccaaaaaccaagaagttgaaacaggtgtggctcca
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    32193 285 +    231697 gggacatacctcagagggaaggggatgaagtgtgggccacgaccatgggatcccctggtcat-------------------atcaccacctgcacctcccaggggctgccagccacacagagtcatggacaggtc-tccacagacacaacttagtaccagcttggatgaagccctctgaggaacg-gggtccagctttcaggatgtgctgcgcgtattaaatcaaagacgtcc---ctatggtgctgtgtttacagaaggaa-gaacacgtgggtccaaaaaccaagaagttgaaacaggtgtggctcca
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         112708 302 +    243043 gggacacacctcagagggaatgggatgaagtgtgggccatgaccatgggagcccctggtcatatcaacacctgtgcctcccatcaacacctgcacctcccaggggctgtcagccacac--agtcatggacaggtc-tctacaggcacaacgcagtaccagcttagacgaaaccctctgaggaatg-ggtgccatctttcaggatgtggtgcatgcattgaatcaaacacgtct---ctatggttctgtgtgttcagaagtaa-gaatacgtgggtccaaaaaccaaaaagtccaagcaggtgtggctcca
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          20487 285 -    863181 gggacacacctcagagggaaagggatgaagcgtgggccatgagcaaggcatctcctggtcat-------------------atcaccacctgcacctcccaggggctgccagccacaccgagtcatggacaggtc-tccacagacataacttagtaccagcttcgatgaagctctctgaggaacg-ggggccagctttcaggatgtgctgcgcgtattaaatcaaagacgtct---ctatggtgctgtgtttacagaaggaa-gaacacgtgggtccaaaaaccaagaagttgaaacaggtgtggctcca
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29203205 282 -  71996105 gggacacaccttagagggaaggggatgaagcgtgggccatgagcaaggcatcccctggtcat-------------------atcaccacct-cacctcccagggcctgccagccacactgagtcatagacaggtc-tctacagacacactttagtaccagcttggatgaaaccctctgaggaatg-ggggccatctttcaggatgtgctgcacatattaaatcaaagacgtct---ctatggtgc--tgtttacagaaggaa-gagtacgtgggtccaaaaaccaagaagttgaaacaggtgtggctcca
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          11234 288 +    273075 gggacacacctcagagggaaagggatgaagcgtgggccatgaccaaggcatcccctggtcat-------------------atcaccacctgcacctcccaggggctgccagccacacagagtcatggacaggtc-tccacagacataacttagtaccagcttggatgaaaccctctgaggaacg-ggggccagctttcaggatgtgctgcgcgtattaaatcagagacgtctctactatggtgctgtgtttacagaaggaa-gaattcgtgggtccaaaaaccaagaagttgaaacaggtgtggctcca
i manLeu1.NW_012101121v1       C 0 C 0
s otoGar3.GL873550             16906910 280 -  18854210 gggacccacttcacagggaaggaggtgcagctcagtccacggccatg--acccactggtcat-------------------atca-caattgcaccactcaggg-ctaggggccacactgaactctggacaggcc-t--aaaggcacagctcagtgccagctgtgatgaatttccatgagaagggaggtatcctctttcaggacacagggcatttgttgaaccagaggcctct---ttatagtgctatgttctcagtaggaa-gaacatgtgggtccagaaaccaagaggtggaagtgagtgtggctcca
i otoGar3.GL873550             I 82017 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I

a score=4719794.000000
s hg38.chr6_GL000254v2_alt      1056203  988 +   4827813 tatctaaacccttatattcaccttcagggtgattttgcacttctcatctccaatatctgggctctgtaggggaggaggtcctggtttcccaaagggggcaccctggcaaggagacatttaaatgagagtccatggaaatacacattatggctgcccccagggatgtttgaatagtatgtgtccagatacaagcaggtgagaag--------------------------------------aggaggaggcagggctgctatcacacaaggagggcaggagatgtgtgtgtggaaataagagatccacttggagaccttatggttccccttgtcctgttg-taagtgtgagcagaatcatccagcaac--------------ccagcctgagagggtttcatattcaagagcccagaaccctcaggaaggaaggattgagtgatactcacaggtaatgtcccaaggcTGTgctcctgtgctctgacatcctcagcaggattggtgca-aagccctgctt--cccatgggctgttcccagccagtgactg----gtcacagcagg--cattaaggcaag--ccattcctgggagacacgggactcctctgatggctaactgtagctggaagactcctccacggccttgctcaactctccttagattgcctgtgctctaggatgcgtcaaacaaactttctctccttctgtccagcacttggggtcacacttgcatcgtggtctgccgccttttctcagggatttctggctcacttcccatattcccttacgggtgtgtccccttataagatgtcgcagactttaagctcatcttggcatctgctccttgaaggacttggacta--aAAATTATTTCCATCTGCATATCAATAAC-TCTTA----TTCCAACCTGTAAAATCCTTCTCTTTATCCAACTTCTGCCACCCCCACAGAATCTATTTTACTTGTGTGTGTAGTATCTctttgagttaacagatatttgttctattaagctactaaattttgaggtagtttgtgacacagtacttgataactatt
s panTro5.chr6                 30021843  991 + 175400573 tatctaaacccttatattcaccttcagggtgattttgcacttctcatctccaatatctgggctctgtaggggaggaggtcctggtttcccaaaggggacaccctggcaaggagacatttaaatgagagtccatggaactacacattatggctgcccccagggatgtttgaatagtatgtgtccagacacaagcaggtgagaag--------------------------------------aggaggaggcagggctgctatcacacaaggagggcaggagatgtgtgtgtggaaataagagatccacttggagaccttatggttccccttgtcctgttg-taagtgtgagcagaatcatccagcaac--------------ccagcctgagagggtttcatattcaagagcccagaaccctcaggaaggaaggattgagtgatactcataggtaatgtcccaaggcTGTGCGCctgtgctctgacatcctcagcaggattggtgca-aagccctgctt--cccatgggctgttcccagccagtgactg----gtcacagcagg--cgttaaggcaag--ccattcctgggagacacgggactcctctgatggccaactgtagctggaagacttctccacggccttgctcaactctccttagattgcctgtgctctaggatgcgtcgaacaaactttctctccttctgtccagcacttggggtcacacttgcatcatggtctgctgccttttc-cagggatttctggctcacttcccatattcccttacgggtgtgtcccctcataagatgtcgcagactttaagctcatcttggcatctgctccttgaaggacttggacta--aAAATTATTTCCATCTGCATATCAATAAC-TCTTACTTATTCCAACCTGTAAAATCCTTCTCTTTATCCAACTTCTGCCACCCCCACAGAATCTATTTTACTTGTGTTTGTAGTATCTctttgagttaacagatatttgttctattaagctactaaattttgaggtagtttgtgacacagcactagataactatt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30252525  988 + 173848474 tatctaaacccttatattcaccttcagggtgattttgcacttctcatctccaatatctgggctctgtaggggaggaggtcctggtttcccaaagggggcaccc---caaggagacatttaaatgagagtccatggaactacacattatggctgcccccagggatgtttgaatagtatgtgtccagacacaagcaggtgagaag--------------------------------------aggaggaggcagggctgctatcacacaaggagggcaggagatgtgtgtgtggaaataagagatccacttggagaccttatggttccccttgtcctgttg-taagtgtgagcagaatcatccagcaaa--------------ccagcctgagagggtttcatattcaagagcccagaaccctcaggaaggaaggattgagtgatactcataggtaatgtcccaaggcTGTGCGCctgtgctctgacatcctcagcaggattggtgca-aagccctgctt--cccatgggctgttcccagccagtgactg----gtcacagcagg--cgttaaggcaag--ccattcctgggagacacgggactcctctgatggccaactgtagctggaagacttctccacggccttgctcaactctccttagattgcctgtgctctaggatgcgtcgaacaaactttctctccttctgtccagcacttggggtcacacttgcatcgtggtctgctgccttttc-cagggatttctggctcacttcccatattcccttacgggtgtgtcccctcataagatgtcgcagactttaagctcatcttggcatctgctccttgaaggacttggacta--aAAATTATTTCCATCTGCATATCAATAAC-TCTTACTTATTCCAACCTGTAAAATCCTTCTCTTTATCCAACTTCTGCCACCCCCACAGAATCTATTTTACTTGTGTTTGTAGTATCTctttgagttaacagatatttgttctattaagctactaaattttgaggtagtttgtgacacagcactagataactatt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6054885  991 +   6154872 tatctaaacacttatattcaccttcagggtgattttgcacttctcatctccaatatctgggctctgtaggggaggaggtcctggtttcccaaagggggcaccctggcaaggagacatttaaatgagagtccatggaactacacattatggctgcccccagggatgtttgaatagtatgtgtccagacacaagcaggtgagaag--------------------------------------aggaggaggcagggctgctatcacacaaggagggcaggagatgtgtgtgtggaaataagagatccacttggagaccttatgtttccccttgtcctgttg-taagtatgagcagaatcatccagcaac--------------ccagcctgagagggtttcatattcaagagcccagaaccctcaggaaggaaggattgagcgatactcataggtaatgtcccaaggcTGTgctcctgtgctctgacatcctcagcaggattggtgca-aagccctgctt--cccatgggctgttcccagccagtgactg----gtcacagcagg--cgttaaggcaag--ccattcctgggagacacggtactcctctgatggccaactgtagctggaagacccctccacggccttgctcaactctccttagattgcctgtgctctaggatgcgtcgaacaaactttctctccttctgcccagcacttggggtcacacttgcgtcgtggtctgccgccttttc-cagggatttctggctcacttcccatattcccttacgggtgtgtcccctcataagatgtcgcagactttaagctcatcttggcctctgctccttggaggacttggacta--aAAATTATTTCCGTCTGCATAGCAATAAC-TCTTACTTATTCCAACCTGTAAAATCCTTCTCTTTATCCAACTTCTGCCACCCCCACAGAATCTATTTTACTTGTGTTTGTAGTATCTctttgagttaacagatatttgttctattaagctactaaattttgaagtagtttgtgacacagcactagataactatt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74729986  989 + 122973662 tattttattcattatattcacccgcagggtgattttgctcttcttacttccaaaatctggactctgcagggtaggaggtcctggtttcccaaagaaggcaccctggcaaggtgac----aaatgagagtccatggaactacacattgtggttgcacccagggatatttgaatagtatgtgcccagagacaagcaggtgagaag--------------------------------------aggaggaggcagggctgctatcacacaatgagagcaggacaagtgtgtgtggaaaccaggaatccacttggggacgtcctggtttcccttgtcc-attg-taagtgtgagcagaatcatccagcaac--------------ccagcctgagagggtttgatattcaagagcccagaaccctcaggaaggaaggattgagtgatactcctaggtaaTGTCCCACgtctctgctcctgtgctctgacatcctcagcaggattagtgcagaagccctgctt--cccatgagttgttctcagccagtgaccg----gtcacagcaagcacactaaggcagg--ccattactgggaaacatgggactcctctgatggccaaatgtggctccaggactcctccatgcccttcttcaactctccttagattgcctctgctctaggatgcatcgaacaaaccttgtctccttctgtccagcacttggggtcacacttgcatcattgtctgctgccttttc-tagggatttctggctcgcttctcatattcccttacagatgtgtccccccataagatgccgtagactttaagctcatcttggcatctgctccttggagaacttggacta--aAAAGTATTAACACGTGCACACCAATAAC-TTTTACTTATTCCAACCTGTAAAATCCATCTCTTTATCCAACTTCTGCCACCCCCCTAAAATCTATTTTGCTTGTGTTTGTAGTATCTctttgaattaacagatatttgttgtattaagccactaaattttgaggtagtttgtgacacagcagttaataactatt
i nomLeu3.chr1a                T 47080 C 0
s rheMac8.chr4                 30409203  970 + 172585720 tgtctcatcccttctattcaccctcagggtgattttgcacttctcatctccaatatcggggctctgcaggggaggaggtcctggtttcccaaagggggcaccctggcaaggagac----aaatgagagtccatggaactacacattatggttgcccccagggatgtttgaatagtatgtgtccagacacaagcaggtgagaag--------------------------------------aggaggaggcagggctgctatcacacaaggaaggc---agaagtgtgtgtggaaataagagatccacttggaggccttatggttccccttgtcctgttg-taaatgtgaacagaatcatccagcaac--------------gcagcctgagagggtttgatattcaagaacccagaaccctcaggaaggaaggactgagtgatacACCTAGataatgtcccaaggctccgctcctgcgctctgacatcct--------------cagaagccctgctt--cccatgggctgtt-ccagccagtgaccg----gtcacagcaggcgcactaaggcagg--ccattactgggagacacgggactcctctgatggccaactgtggctggaggactcctccatggccttgctc--ccctccttagattgcctgtgctctaggatgtgtcgaacaaaccttctctccttctgtccagcacttggtgtcacactcgcattgtgatctgctgccttttc-ctgggatttctggctcgcttcgcatattcccttacaggtgtgtcccctcataaaatgccgcagacttgaagctcatcttggcatctgctccttgaaggacttagacta--aAAATTATTTCCATCTGCACATCAATAAC-TCTTACTTACTTCAACTTGTAAAATCCTTCTCTTCGTCCAACTTCTGCCACCCCCATAGAATCTATTTTACTTGTGTTTGTAGTATCTCTTtgagttaacggatacttgttctattaagctattaaattttgaggtagtttgtgacacagcacttgataaccatt
i rheMac8.chr4                 C 0 I 304
s macFas5.chr4_KE145577_random    32478  988 +    231697 tgtctcatcccttctagtcaccctcagggtgatcttgtacttctcatctccaaaatctggactgtgtagggaaggaggtcctggtttcccaaagggggcaccctggcaaggagac----aaatgagagtccatggaactacacattattgttgtcctcagggatgttcgaatagtatgtgtccagacacaagcaggtgagaag--------------------------------------aggaggaggcagggctgctatcacacaaggaaggcaggagaagtgtgtgtggacataagaaatccacgtggggatctctttgctccccttgtcctattgttaagtgtgagcagaatcatacagcaac--------------tgactctgagaaggtttgatattcaagagcccagaacactcaagaaggaaggattgagtgatactcctgggtaaTCTcccaaggctccgctcctgtgctctgacatcctcagtaggattagtgcagaagccctgctt--cccatgaggtattcccagccagtgaccg----gtcacagcaggcacactaaggcagg--ctattactgggagacaggggacaactctggtggtgaactatgactccaggactcctccatggccttgctcacctctccttagactgcctgtgctctaggatgcatcgaacaaactttctctc---ctgtccagcacttggggtcacacttgcatcttggtctgccgctttttc-cagggatttctggctcacttcccatattcccttacaggtgtgtaccctcaaaacattccgcagactcaaagctcatcttggcatctgctccttgaagggcttggacta--aAAATCACTTTCATCCTCATAGCAATAAC-TCTTACTTATTCCAACCTGTAAAATCCTTATCTGTATACAACCTCTGCCTCCCCCATAGAATCAATTTTGTTTATGTTTGTAGTATCTCTTtgagttaacagatatttattgtattaagccactgaattttgaggtagtttgggacacagcagttaataactatt
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         113010  992 +    243043 tgtctgatcccttatattcaccaccagggtgattttgcacttctcatctccaaaatctggactctgcagggtagaaagtcctgatttcccaaagggggcaccctggcaaggagac----aaatgggagtccatggaactacacattttggttgcccccagggaagtctgaatagaatgttcccagaaacaagcaggtaagaag--------------------------------------aggaggaggcagggctgctatcacacaatgagggcagcagaa--gtgtgtggaaaccagaggtccacgtggggacctcctggttcccctcatcccattgttaagtgtgagcagaaacatccggcaat--------------ccagcctgagagggtttcctattcaagagcccag-accctcaggaaggaagg-ttgagtcacactcctgggtaatctcctaaggcTGTGCT-ctgtgctctgacaccctcagtagcattggtgcagaagccctgcttcccccataggctgttcccagccagtgaccgctaaggcgcagcaggcgcactaacacagg--ccattactgggagacacgggactcctctgatggccaactgtggctggaggactcctccatggccttgttcaaccctccttggattgtccgtgctctaggatgcgtggaacaaaccttctctccttctgtccagcacttggggtcacacttgcatcttggtctgctgccttttc-gagggatttctggctcacttcccatacacccttacaggtgtgttccctcataaaatgccacagacttgaagctcatcttggcatctactccttggaggacttggacta--aAAATAATTTCCATCTGCACGTCAATAAC-TCTTACTTATTCCAACTTGTAAAATCCTTCTCTTTATCCAACTTCTGCCACCCTCATAGAACTGATTTTGCTTGTGTTTGTAGTATCTctttgagttaacaggtattttttatattaagcccctaaatttttaggtagtttgtgacacagtagttaataactatt
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          20772  986 -    863181 tgtctcatcccttctattcaccctcagggtgattttgcacttctcctctgcaatatcggggctctgcaggggaggaggtcctggtttcccaaagggggcaccctggcaaggagac----aaatgagagtccatggaactacacattatggttgcccccagggatgtttgaatagtatgtgtccagacacaagcaggtgagaag--------------------------------------aggaggaggcagggctgctatcacacaaggagggc---agaagtgtgtgtggaaataagagatccacttggaggctttatggttccccttgtcctgttg-tgagtgtgagcagaatcatccagcaac--------------gcagcctgagagggtttgatattcaagagcccagaaccctcaggaaggaaggactgagtgatacACCTAGataatgtcccaaggctccgctcctgtgctctgacatcctcagaagggttagtgcagaagccctgctt--cccatgggctgttcccagccagtgaccg----gtcacagcaggcgcactaaggcagg--ccattactgagagacaggggactcctctgatggccaactgtggctggaggactcctccacggccttgctcaaccctccttagattgcctgtgctctaggatgcgttgaacaaacctcccccc-ttctgtccagcacttggggtcacactcgcattgttgtctgctgccttttc-cagggatttctggctcgcttcccatattcccttacaggtgtgttccctcataaaatgccacagacttgaagctcatctgggcatctgctccttggaggacttggacta--aAAATTATTTCCATCTGCACATCAATAAC-TCTTACTTATTTCAACTTGTAAAATCCTTCTCTTTGTCCAACTTCTGCCACCCCCATAGAATCTATTTTACTTGTGTTTGTAGTATCTCTTTGAGTTAACGGATATttgctgtattaagctactaaattttgaggtagtttgtgacacagcacttgataacTATT
i cerAty1.NW_012002535v1       C 0 I 290
s chlSab2.chr17                29203487 1000 -  71996105 tgtctcatctcttctattcaccctcagggtgattttgcacttctcatctccaatatcggggctctgcaggggaagaggtcctggtttcccaaagggggcaccctggcaaggagac----aaatgagagtccatggaactacacattatgggtgcccccagggatgtttgactagtatgtgtccagacacaagcaggtgagaag--------------------------------------aggaggaggcagggctgctatcacacaaggaaggc---agaagtgtgtgtggaaataagagatctacttggaggccttatggttccccttgtcctgttg-taagtgtgagcagaatcatccagcagaatcatccagcaacggcagcctgagagggtttgatattcaagagcccagaaccctcaggaaggaaggattgagtgatacACCTAGataatgtcccaaggctccgctcctgtgctctgacatcctcagaagggttagtgcagaagccctgctt--cccatgggctgttcccagccaatgaccg----gtcacagcaggcgcactaagacagg--ccattactgggagacacgggactcctctgatggccaactgtggctggaggactcctccatggccttgctcaaccctccttagattgcctgtgctctaggatgtgtcaaacaaaccttctctc-cttcgtccagcacttggggtcacacttgcattgtggtgtgctgccttttc-cagggatttctggctcgcttcgcatattcccttacaggtgtgtcctctcataaaatgccacagacttgaagctcatcttggcatctgctccttggaagacttggacta--aAAATCATTTCCATCTGCACGTCAATAAC-TCTTACTTATTCCAACTTGTAAAATCCTTCTCTTTGTCCAACTTCTGCCACCCCCGTAGAATCTATTTTACTTGTGTTTGTAGTATCTCTTTGTGTtaatggatatttgttctattaagctactaaattttgaggtagtttgtgacacagcacttgataactatt
i chlSab2.chr17                C 0 I 296
s manLeu1.NW_012101121v1          11522  985 +    273075 tgtctcatcccttctattcaccctcagggtgattttgcacttctcctctgcaatatcggggctctgcaggggaggaggtcctggtttcccaaagggggcaccctggcaaggagac----aaatgagagtccatggaactacacattatgggtgcccccagggatgtttgaatagtatgtgcccagacacaagcaggtgagaag--------------------------------------aggaggaggcagggctgctatcacacaaggaaggc---agaagtgtgtgtggaaataagaaatccactgggaggccttatggttccccttgtcctgttg-tgagtgtgagcagaatcatccagcaac--------------gcagcctgagagggtttgatattcaagagcccagaaccctcaggaaggaaggactgagtgatacACCTAGataatgtcccaaggctccgctcctgtgctctgacatcctcagaagggttagtgcagaagccctgctt--cccatgggctgttcccagccagtgaccg----gtcacagcaggcgcactaaagcagg--ccattactgggagacacaggactcctctgatggcc-actgtggctggaggactcctccacggccttgctcaaccctccttagattgcctgtgctctaggatgtgtcgaacaaacctcccccc-ttctgtccagcacttggggtcacactcgcattgtggtctgctgccttttc-cagggatttctggctcgcttcccatattcccttacaggtgtgttccctcataaaatgccacagacttgaagctcatctgggcatctgctccttggaggacttggacta--aAAATTATTTCCATCTGCACATCAATAAC-TCTTACTTATTTCAACTTGTAAAATCCTTCTCTTTGTCCAACTTCTGCCACCCCCATAGAATCTATTTTACTTGTGTTTGTAGTATCTctttgagttaacggatatttgctgtattaagctactaaattttgaggtagtttgtgacacagcacttgataactatt
i manLeu1.NW_012101121v1       C 0 I 290
s otoGar3.GL873550             16907190  982 -  18854210 cgggccatcacttagattcgcccactggg-gactctgcactctgcaac-------tctgggctttgcagagtagcaggttctgctt-----------gctgtctgagagggggac----aaataagag-ccattgagctacccattacagttgccaccagggaagtttggacagcacctgcccggagaccagtaggtgaggagtccccttctctccagcaggggaatagaccctgacccccaggaggaggcagggctgct-tcacacagag-gggcaggagcagtgtgtgtgcaatccagggaatcacttaggggtttcaggattccccttgttctgctg-ccagtgtgaacagaatcatccagcaac--------------ccagcctgagagggtttgatttccaagggcccagacccctcaggaaggagggtttgagtcacaccccctggGaatctaccaagagacctctcttgtgctcctatatccccagtagcattggtgcagaggccctgatt--cccatggg-tgtttccatactgtcatgg----gtcacagtagggacaaggaggcaggatccattcctaggagacacaggactcctctcacggccatttgtggctccaggactcctccatggccttgctcagctctccttaggctgcctg-------ggattcctgtcttagaccttcgctcctt--------cacaggggctcagactcacattatgg-ctg-tggctttcc-cagtgtcttctggc---ctccccatgttgtctgat-------tcccctcattacatgctggtgagtttaatctcatcttgtcat-tgcttcttggatgactcacgctaacaAAATCATTTCCATCTGCACACAAATGACTTCTTACTTATTGAAACTTGTAAAATCCTTCCCTTCATCCAACTCTTCCCACCCACATTGGCTCCATTTTACTGGTGTCTGTATTATCTctttgagttaataaatgtttgttgtgttaagccgcaaaatttgggagtagtttgttacacaggcatagatctgtaat
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982  834 +    187130 I
e aotNan1.NW_018496904v1          97996   67 -    383796 I
e cebCap1.NW_016107755v1         358924  169 -   1771730 I
e calJac3.chr4                 30145138    0 + 171630274 C
e colAng1.NW_012115566v1        2822012  343 -   3067355 I

a score=470495.000000
s hg38.chr6_GL000254v2_alt      1057191 103 +   4827813 aAGGCTTTCTTAAGTTTCCATTATTCCATGGATATTATCTACATATCTTTTAATCCCTTGCATTTTAATAAC-TTAGCTATACTTGCTGTTTCCAACTCTTTCC
s panTro5.chr6                 30022834 104 + 175400573 aAGGCTTTCTTAAGTTTCCATTATTCCATGGATATTCTCTACATATCTTTTAATCCCTTGCATTTTAATAACAttagctatacttgctgtttccaaccctttcc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30253513 104 + 173848474 aAGGCTTTCTTAAGTTTCCATTATTCCATGGATATTCTCTACATATCTTTTAATCCCTTGCATTTTAATAACAttagctatacttgctgtttccaaccctttcc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6055876 104 +   6154872 aAGGCTTTCTTAAGTTTCCATTATTCCATGGATGTTATCTACATATCTTTTAATCCCTTGctttttaataacattagctatacttgctgtttccaaccctttcc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74730975 102 + 122973662 aAGGCTTTCTTAAGTTTCTATTATTCCATGGATGTTATCTAC--ATCTTTTAATTCCCTGCATTTTAATAATGTTAGCCACACTTGCTGTTTCTAATCCTTTCC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30410477 104 + 172585720 AAGGCTTTCTTAAGTTTCCATTATTCCGTGGATATTATCTACACATCTTTTAATACCTTTCATTttaataacattagccatatttgccgtttccaaccctttcc
i rheMac8.chr4                 I 304 C 0
s macFas5.chr4_KE145577_random    33466 103 +    231697 aAGGCTTTCTTCAGTTTATATTATTGCATGGATATTATCTACATCTCTTTTAATCCCTTGCATTTTAATAATgttggtcatacttgctg-ttccaatcctttcc
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         114002 104 +    243043 aAGGCTTTCTGAAGTTTCTATTATTCTGTGAATATTGTCCACATCTCTTTTAATTTGTTGCATTTTAATAATGTTAGCCATACTTGCCGTTTCCAGTCCTTTCC
i macNem1.NW_012013156v1       C 0 I 24
s cerAty1.NW_012002535v1          22048 104 -    863181 AAGGCTTTCTTAAGTTTCCATTATTCCATGGATATTATCTACACATCTTTTAATAGCTTGCATTttaataacattagccatatttgccgtttccaaccctttcc
i cerAty1.NW_012002535v1       I 290 C 0
s chlSab2.chr17                29204783 101 -  71996105 AAGGCTTTCTTAAGTTTCCATTATTCCATGGATATTATCTACACATCTTTTAATACCTTGCATTTTAATAAC---AGCCATATTTGCCGTTTCCAACCATTTCC
i chlSab2.chr17                I 296 C 0
s manLeu1.NW_012101121v1          12797 104 +    273075 AAGGCTTTCTTAAGTTTCCATTATTCCATGGATATTATCTACACATCTTTTAATAGCTTGCATTTTAATAACATTAGCCATATTTGCCGTTTCCAACCctttcc
i manLeu1.NW_012101121v1       I 290 C 0
s otoGar3.GL873550             16908172 101 -  18854210 aAAGC--TCTTGCGTTTCTAGTATTCCAAAGATATTAGGTACATCCCTGTTATTTCCTTGCATTTTGATGATGTCAGCCACACGAGCTCTCTCCAATTCCTCT-
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I

a score=60691.000000
s hg38.chr6_GL000254v2_alt      1057294 22 +   4827813 TCCTATT-----TTTGAACATTTT-AAA
s panTro5.chr6                 30022938 27 + 175400573 tcctattc-ttttttgaacATTTTTAAA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30253617 27 + 173848474 tcctattc-ttttttgaacATTTTTAAA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6055980 27 +   6154872 tcctattc-ttttttgaacATTTTTAAA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74731077 26 + 122973662 TCCTATTCTTTTTTTGAAAATGTT--CA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30410581 25 + 172585720 tcctattc-ttttttgaacATTttta--
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    33569 25 +    231697 tcctattc-ttttttgaaAATTCTTA--
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          22152 25 -    863181 tcctattc-ttttttgaacATTTTTA--
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29204884 25 -  71996105 TCCTATTC-TTTTTTGAACATTTTTA--
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          12901 25 +    273075 tcctattc-ttttttgaacattttta--
i manLeu1.NW_012101121v1       C 0 C 0
s otoGar3.GL873550             16908273 17 -  18854210 CCCTGTTT-TCTTTTTCA----------
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e macNem1.NW_012013156v1         114106 24 +    243043 I

a score=485473.000000
s hg38.chr6_GL000254v2_alt      1057316 106 +   4827813 TTTTGtctttctctgtccttccttccttctttcctcctttcctccctCAGAGCTTTCTCCCTCCCTCCATTTTTTT------------------------CATA------AACTCCAAGTGTTTAGGCCAAAAGGA
s panTro5.chr6                 30022965 106 + 175400573 TTTTGtctttctctgtccttccttccttctttcctcctttcctccctCAGAGCTTTCTCCCTCCCTCCATTTTTTT------------------------CATA------AACTCCAAGTGTTTAGGCCAAAAGGA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30253644 106 + 173848474 TTTTGtctttctctgtccttccttccttctttcctcctttcctccctCAGAGCTTTCTCCCTCCCTCCATTTTTTT------------------------CATA------AACTCCAAGTGTTTAGGCCAAAAGGA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6056007 105 +   6154872 TTTTGtctttctctgtccttccttccttctttcctcctttcctccctCAGAGCTTTCTCCCTCCCTCCA-TTTTTT------------------------CATA------AACTCCAAGTGTTTAGGCCAAAAGGA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74731103 105 + 122973662 TTTTGtctttctctgtccttccatctttctttcctcctttcctccctCAGAGATTTCTCCCTCCCTCCA-TTTTTT------------------------CACA------AACTCTATGTGGTTAGGCTAAAAAGA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30410606 106 + 172585720 ttttgtctttctctgtccttccttccttctttcctcctttcctccctCAGAGCTTTCTCCCGCCCTCTATTTTTTT------------------------CATA------AAACCTAAGTGTTCAGGCTAAAAGGA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random    33594 105 +    231697 TTTTGtctttctctgtccttccttccttctttcctcctttcctccctCAGAGCTTTCTCTCTCCCTCCA-TTTGTT------------------------CATA------AACCCTATGTGGTTAGATTAAAAGGA
i macFas5.chr4_KE145577_random C 0 I 79075
s macNem1.NW_012013156v1         114130 106 +    243043 tttcatctttctctgtccttccttccttctttcctccttttctccctCAGAGCTTTCTCCCTCCCTCCATTTTTTT------------------------CACA------AATGCTATGTGGTTAGGCTAAAAGGA
i macNem1.NW_012013156v1       I 24 C 0
s cerAty1.NW_012002535v1          22177 106 -    863181 TTTTGtctttctctgtccttccttccttctttcctcctttgctccctcagagctttctccctccctCTATTTTTTT------------------------CATA------AAACCTAAGTGTTCAGACTAAAAGGA
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29204909 100 -  71996105 TTTTGTctt--tctgtccttccttccttttttcctcctttcctccctCAGAGCTTTCTCCCTCC----ATTTTTTT------------------------CATA------AAACCTAAGTGTTTAGGCTAAAAGGA
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          12926 106 +    273075 ttttgtctttctctgtccttccttccttctttcctcctttgctccctCAGAGCTTTCTCCCTCCCTCTATTTTTTT------------------------CATA------AAACCTAAGTGTTCAGACTAAAAGGA
i manLeu1.NW_012101121v1       C 0 C 0
s otoGar3.GL873550             16908290 133 -  18854210 GGTTGTCTTTCtccttcctactttc---ccttccttctttcttctgtgtcaccttccttcctCACCCCAGTTTTTCTTTTTTCTTTTGGAAGATTCCTAACATATAAAATAACCCTATGTGTTTATGCTGAATGTA
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I

a score=335917.000000
s hg38.chr6_GL000254v2_alt      1057422 68 +   4827813 AGCATTATTTGAACTT-TATGCTAAAAGTATAATGCCGTAATTTATAATATAAAAGTAAAGAAAAGGAA
s panTro5.chr6                 30023071 68 + 175400573 AGCATTATTTGAACTT-TATGCTAAAAGTATAATGCCGTAATTTATAATATAAAAGTAAAGAAAAGGAA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30253750 68 + 173848474 AGCATTATTTGAACTT-TATGCTAAAAGTATAATGCCATAATTTATAATATAAAAGTAAAGAAAAGGAA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6056112 68 +   6154872 AGCATTATTTGAACTT-TATGCTAAAAGTATAATGCCGTAATTTATAATATAAAAGTAAAGAAAAGGAA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74731208 68 + 122973662 AGCATTATTTGAATCT-TATGCTTAAAGTATAATGCCATAATTTACAGGATAAAAGTAAAGAAAAGGAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30410712 68 + 172585720 AGCATCACTTGAACTT-AATGCCAAAAGTATAATGCCATAATTTATAATATAAAAGTAAAGAAAAGGAA
i rheMac8.chr4                 C 0 I 17555
s macFas5.chr4_KE145577_random   112774 68 +    231697 agcaTTATTTTAATCT-TATGCTAAAAGTATAATGCTATAAATTGTAGAATAAAAGTAAAGAAAAGGAA
i macFas5.chr4_KE145577_random I 79075 C 0
s macNem1.NW_012013156v1         114236 68 +    243043 AGCATTATTTTAATCT-TATGCTAAAAGTATAATGCCATAAATTATAGAATAAAAGTAAAGAAAAGGAA
i macNem1.NW_012013156v1       C 0 C 0
s cerAty1.NW_012002535v1          22283 68 -    863181 AGCATCACTTGAACCT-AATGCCAAAAGTATAATGCCATAATTTATAATATAAAAGTAAAGAAAAGGAA
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29205009 68 -  71996105 AGCATCACTTGAACCT-AATGCTAAAAGTATAATGCCATAATTTATAATATAAAAGTAAAGAAAAGGAA
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          13032 68 +    273075 AGCATCACTTGAACCT-AATGCCAAAAGTATAATGCCATAATTTATAATATAAAAGTAAAGAAAAGGAA
i manLeu1.NW_012101121v1       C 0 C 0
s otoGar3.GL873550             16908423 68 -  18854210 AGCATTATCTGAATCTATATGCTAAAATTGTAATGCTACGATGTATATAATAAAATT-AAGAAAAGGAA
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I

a score=69199.000000
s hg38.chr6_GL000254v2_alt      1057490 14 +   4827813 GTTGTTAATGGAAT
s panTro5.chr6                 30023139 14 + 175400573 GTTGTTAATGGAAT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30253818 14 + 173848474 GTTGTTAATGGAAT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6056180 14 +   6154872 GTTGTTAATGGAAT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74731276 14 + 122973662 GTTATTAATGGAAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30428335 14 + 172585720 GTTATTAATAGAAT
i rheMac8.chr4                 I 17555 C 0
s macFas5.chr4_KE145577_random   112842 14 +    231697 GCTATTAATGGAAT
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         114304 14 +    243043 GCTATTAATGGAAT
i macNem1.NW_012013156v1       C 0 M 4267
s cerAty1.NW_012002535v1          22351 14 -    863181 GTTATTAATTGAAT
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29205077 14 -  71996105 GTTATTAATTGAAT
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          13100 14 +    273075 GTTATTAATTGAAT
i manLeu1.NW_012101121v1       C 0 C 0
s otoGar3.GL873550             16908491 14 -  18854210 GTTATTAACAGGAT
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I

a score=996305.000000
s hg38.chr6_GL000254v2_alt      1057504 248 +   4827813 ---ATGAA-AAAATGCCTAGGGTGATTCTATAGCCAAGACAGTACCTTTTAACATTTAATTTCTGCCTCCAACTGAATGTTTTCAGAACACATGAGCAACACAAGCTCTTTCCCATTCttggtacaagc---------------acttgagaaatcaaattagccttatctagtatgattaatgtccatacatcatataatcccaccatctgcctcctgatcataccccctggggacattcttggctat----gtgtccaggagacatgta
s panTro5.chr6                 30023153 248 + 175400573 ---ATGAA-AAAATCCCTAGGGTGATTCTATAGCCAAGACAGTACCTTTTAACATTTAATTTCTGCCTCCAACTGAATGTTTTCAGAACACATGAGCAACGTGAGCTCTTTCCCATTCttggtacaagc---------------acttgagaaatcaaattagccttatctagtatgattaaggtccatacatcatataatcccaccatctgcctcctgatcatacaccctggggacattcttggctat----gtgtccaggagacatgta
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30253832 248 + 173848474 ---ATGAA-AAAATCCCTAGGGTGATTCTATAGCCAAGACAGTACCTTTTAACATTTAATTTCTGCCTCCAACTGAATGTTTTCAGAACACATGAGCAACGTGAGCTCTTTCCCATTCttggtacaagc---------------acttgagaaatcaaattagccttatctagtatgattaaggtccatacatcatataatcccacgacctgcctcctgatcatacaccctggggacattcttggctat----gtgtccaggagacatgta
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6056194 248 +   6154872 ---ATGAA-AAAATGCCTAGGGTGATTCTATGGCCAAGACAGTACCTTTTAACATTTAATTTCTGCCTCCAACTGAATGTTTTCAGAACACATGAGCAACATGAGCTCTTTCCCATTCttggtacaagc---------------acttgagaaatcaaattagccttatctagtatgattaaggtccatacatcatataatcccaccatctgcctcctgatcatacaccctggggacattcttggctat----gtgtccaggagacatgta
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74731290 247 + 122973662 ---ATGAA-AAAATGCCTAGGGGGATTCTGTAGCCGAGACAGTGGTTTTTAACATGTAATCTCCACCTTCAACCGAATGTTTTCAGAACACATGAGCAAAATAAGTTCTTTCCCATTCttggtacaagc---------------acttgggaaatcaaattagccttatcttgtatgattaatgtccatacactgtataatcccaccatctg-ctcctgatcatacactctggggatatttttggctat----gtgtcccagagacgtgta
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30428349 242 + 172585720 ---ATGAA-AAAATGCCTAGGGTGATTCTGTAGCCAAGACAGCGGCTTTTAACATTTAATCTTCACCTTCAACTGAATGTTTTCAGAACACATGAGCAACGTGAACTCTTTCCCATTCttgatacaagc---------------acttgggaaatcaaattagccttatctagtatgattaatgtccatacaccatataatcccaccgtctgcttcctgatcatacactctggggacattct------t----gtgtccaggagacgtgta
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   112856 246 +    231697 ---GTGAA-AAAATGCCTAAGGTGATTCTGTAGCCAAGACAGTGGTTTTTAACATTTAATCTCCACCTTCAATTGAATGTTTTCAGAACACCTGAGCAACATGAGCTCTTTCCCATTCttggtacaagc---------------acttgggaaatc-aattagccttatctagtatgattaacatccatgcaccaaataatcccaccatctgc-tcctgatcatatactctggggatattcttggctat----gtatccaggagacgtgca
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          22365 249 -    863181 ---ATGAAGAAAACGTCTAGGGTGATTCTGCAGCCAAGACAGTGGCTTTTAATATTTAATCTCCTACTTCAACTGAATGTTTTCAGAACACACGAGCAACATGAGCTCTTTCCCATTCttggtacaaac---------------acttgagaaatcaaattagccttatctagtctgattaatgtccatacatcatataatcccaccgtctgcctcctgatcatacactctggggacattcttggctat----gtgtccaggagacgtgta
i cerAty1.NW_012002535v1       C 0 I 1246
s chlSab2.chr17                29205091 249 -  71996105 ---ATGAAGAAAATGTCTAGGGTGATTCTGCAGCCAAGACAGTGGCTTTTAATATTTAATCTCCTCCTTCAACTGAATGTTTTCAGAACACACGAGCAACATGAGCTCTTTCCCATTCttggtacaagc---------------acttgagaaatcaaattagccttatctagtctgattaatatccatacaccatgcaatcccaccatctgcctcctgatcatacactctggggacattcttggctat----gtgtccaggagacgtgta
i chlSab2.chr17                C 0 N 0
s manLeu1.NW_012101121v1          13114 249 +    273075 ---ATGAAGAAAACGTCTAGGGTGATTCTGCAGCCAAGACAGTGGCTTTTAATATTTAATCTCCTACTTCAACTGAATGTTTTCAGAACACACGAGCAACATGAGCTCTTTCCCATTCttggtacaaac---------------acttgagaaatcaaattagccttatctagtctgattaatgtccatacatcatataatcccaccgtctgcctcctgatcatacactctggggacattcttggctat----gtgtccaggagacgtgta
i manLeu1.NW_012101121v1       C 0 N 0
s otoGar3.GL873550             16908505 254 -  18854210 CTGAGGGA-AAAATGCCT--GATAATTCTGTAGCCAAGGCAGTGCCTTTTAACCCTTAATTCCTCACTTTCCCTGAGTGCTTTGAGAACAGATgagcaaattaaactcttacaaattcctggtaaaagctaaattagtataagaaccttggaaataaaattagccttaactagtatggttaaagtacttacactatgtaa--------------tcctgagcacacactctggggacctccttgcctatcaacatgtacaggagacatgta
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e macNem1.NW_012013156v1         114318 4267 +    243043 M

a score=255251.000000
s hg38.chr6_GL000254v2_alt      1057752 96 +   4827813 caccaatgtttatggc-aaaaactggaaacaatcacatatacatcaatgggaat-taacaaaatagtcgtataataataaaaagtaaaacttcagcag
s panTro5.chr6                 30023401 96 + 175400573 caccaatgtttatggc-aaaaactggaaacaatcacatatacatcaatgggaat-taacaaaattgtcgtataataataaaaagtaaaactttagcag
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30254080 96 + 173848474 caccaatgtttatggc-aaaaactggaaacaatcacatatacatcaatgggaat-taacaaaattgtcgtataataataaaaagtaaaactttagcag
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6056442 95 +   6154872 caccaatgtttatggc--aaaactggaaacaatcacatatacatcaatgggaat-taacaaaattgtcatataataataaaaagtaaaactttagcag
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74731537 97 + 122973662 caccaatgtttatggcaaaaaactggaaacaatcacatacgcatcaatgggaat-taacaaaattgtgatataatcacgaaaagtaaaatttcagcag
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30428591 96 + 172585720 caccaatgtttatggc-aaaaactggaaacaatcacatatacatcaatgggaat-taacaaacttgtggtatattcataaaaagtaaaactttagcag
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   113102 96 +    231697 caccaatgtttatggc-aaaaactggaaacaatcacatatacatcaatgggaat-taacaaaattgtggtattatcgcaaaaagtaaaactttagcag
i macFas5.chr4_KE145577_random C 0 C 0
s chlSab2.chr17                29312481 96 -  71996105 caccaacgtttatggc-aaaaactggaaacaatcacatatacatcaatgggaat-taacaaaattgtggtataatcgcaaaaagtaaaactttagcag
i chlSab2.chr17                N 0 I 637
s otoGar3.GL873550             16908759 96 -  18854210 tattaatgtttgtggc-aaaaactgaaatcaacc-tgtatacaactacagaaacatagcaaaactgtggtataattataacatgtaaaatttcagtag
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macNem1.NW_012013156v1         114318 4267 +    243043 M

a score=15007.000000
s hg38.chr6_GL000254v2_alt      1057848 11 +   4827813 caacagtgaat
s panTro5.chr6                 30023497 11 + 175400573 caacagtgaat
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30254176 11 + 173848474 caacagtgaat
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6056537 11 +   6154872 caacagtgaat
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74731634 11 + 122973662 taaaaatgaat
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30428687 11 + 172585720 taaaaatgaat
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   113198 11 +    231697 taaaaatgaat
i macFas5.chr4_KE145577_random C 0 I 621
s otoGar3.GL873550             16908855  7 -  18854210 taaaaat----
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29312577 637 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macNem1.NW_012013156v1         114318 4267 +    243043 M

a score=6632.000000
s hg38.chr6_GL000254v2_alt      1057859 4 +   4827813 gaac
s panTro5.chr6                 30023508 4 + 175400573 gaac
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30254187 4 + 173848474 gaac
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6056548 4 +   6154872 gaac
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74731645 4 + 122973662 gaac
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30428698 4 + 172585720 gagc
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   113830 4 +    231697 gaaa
i macFas5.chr4_KE145577_random I 621 C 0
s otoGar3.GL873550             16908862 4 -  18854210 aaat
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138 0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29312577 637 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macNem1.NW_012013156v1         114318 4267 +    243043 M

a score=31476.000000
s hg38.chr6_GL000254v2_alt      1057863 12 +   4827813 agcaccctccca
s panTro5.chr6                 30023512 12 + 175400573 agcaccctccca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30254191 12 + 173848474 agcaccctccca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6056552 12 +   6154872 agcaccctccca
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74731649 12 + 122973662 agcaccctccca
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30428702 12 + 172585720 agcaccctccca
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   113834 12 +    231697 agcaccatcctg
i macFas5.chr4_KE145577_random C 0 C 0
s chlSab2.chr17                29313214 12 -  71996105 agcagcctcctg
i chlSab2.chr17                I 637 I 14115
s otoGar3.GL873550             16908866 12 -  18854210 aacagcccccca
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macNem1.NW_012013156v1         114318 4267 +    243043 M

a score=661097.000000
s hg38.chr6_GL000254v2_alt      1057875 297 +   4827813 catcagaga----taactctcctacacataacatgcatcagcatcacagaagaatgcacattgtgtgagttctctgtacggggaagttaaaaaaagcag----gtcaaactgtgatttggatatatatatatatacttattgtaaaaatctttagagacaatgaaaaggaatagtaaatacaagactcaagatagaagttccttttggggAATAGAATTGGACAACAGCCGAGGGTGGCTTCATAGGTTTTGTTTTTTATGCCAGGAGGGGATGTCCAGGTAGTTAAGTTACTTGATCATAAAtc
s panTro5.chr6                 30023524 293 + 175400573 catcagaga----taactctcctacacataacatgcatcagcatcacagaagaatgcacattgtgtgagttctctgtacagagaagttaaaaaaagcag----gtcaaactgtgatttggatatatatata----cttatcgtaaaaatctttagagacaatgaaaaggaatagtaaatacaagactcaagatagaagttccttttggggAACAGAATTGGACAACAGCTGAGGGTGGCTTCATAGGTTTTGTTTTTTATGCCAGGAGGGGATGTCCAGGTAGTTAAGTTACTTGATCATAAATC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30254203 293 + 173848474 catcagaga----taactctcctacacataacatgcatcagcatcacagaagaatgcacattgtgtgagttctctgtacagagaagttaaaaaaagcag----gtcaaactgtgatttggatatatatata----cttattgtaaaaatctttagagacaatgaaaaggaatagtaaatacaagactcaagatagaagttccttttggggAACAGAATTGGACAACAGCTGAGGGTGGCTTCATAGGTTTTGTTTTTTATGCCAGGAGGGGATGTCCAGGTAGTTAAGTTACTTGATCATAAATC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6056564 293 +   6154872 catcagaga----taactctcctacacataacatgcatcagcatcacagaagaatgcacattgtgtgagttctctgtatggggaagttaaaaaaagcag----gtcaaactgtgatttggatatatatata----cttattgtaaaaatctttagagacaatgaaaaggaatagtaaatacaagactcaagatagaagttccttttggggAATAGAATTGGACAACAGCTGAGGGTGGCTTCATAGGTTTTGTTTTTTATGCCAGGAGGGGATGTCCAGGTAGTTAAGTTACTTGATCATAAATC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74731661 284 + 122973662 catcagaga----taactctcctacacgtaacgc------gcatcccaggagaatacatatagtgtgagttctctgcacagggaagttaaaaaaaacag----gtcagactgtgatttaggtatatata------tttattgtaaaaatctttagagacattgcaaaggaatagtaaatacaagactcaagatagaggttccttttggaggATAGGATTGGGCAACAGTCTAGGGTGGCTTCATAGCTTCTGATTTTTATGCCAGGAGAGGATGTCCAGGTAGTT-AGTTACTTGATCATAAATC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30428714 285 + 172585720 catcagaga----taactctcctacacataacgc------gcatcacggaagaatatacatagtgtgagttctctttacggggaagtttaaaaaa-taa----gtcaaactgtgatttgggtatatatata----tttattgtaaaaatcgttagagacaatacaaaggaatggtaaatacaagactcaagacagaggttcctttCCGCGGATAGGATTGGACAACAGCATAGGGTGGCTTCATAGGTTCTGTTTCTTACGCTAGGAGGGGATGTCCAGATAGTT-AGTTACTTGATCATAAATA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   113846 289 +    231697 catcagaga----taactctcctacacataacgt------gcatcacagaagaatagatatagtgtgagttctctgtatggggaagttaaaaaaa-aaaacaggtcaaactgtgatttgggtatatatata----cttattgtaaaaatctttagtgacagtgcaaaggaatagtaaatacaagactcaagacagaggttccttttgggggATAGGATTGGACAACAATCTAGGGAGGCTTCATTGGTTCTATCTCTTATGCCAGGAGGGGATGCCCAGGTGGTT-AGTTACTTGATCGTAAAAC
i macFas5.chr4_KE145577_random C 0 C 0
s manLeu1.NW_012101121v1         151779 285 +    273075 CATCAGAGA----TAACACTCCTACACATAATGT------GCAtcacaaaagaatacatagagtgtgagttctctgtaggtagaagttaaaaaaa-cgg----gccaaactgtgatttgggtatatatatg----cttattgtaaaaatctttagtgacaatgcaaaggaatagtaaatgcaagactcaagatataggttcctttttggggATAGGATTGGACAACCATCTAGGATGGCTTCATAGGTTCTGTTTCTTATGCCAGGAGGGGGTGCCCAGGTACTT-AGTTACTTGATCATAAAAC
i manLeu1.NW_012101121v1       N 0 I 22
s otoGar3.GL873550             16908878 242 -  18854210 cattaGGAGTCACTAACTCTCCTACATGTAGTGT------GTGCCACGAAAGAAAACATGGAGGATGAGTTCAGTGTGCAGGTGAGTTAAAAG---CAG----GAAAAACTAACTTGGGGGGATATAGATA----CTTA---TAAAAATCTTTAGAG------------------AAATA-AAGACTCTGGGT-------------------TGGGACTGAGTGGCAGTCTATGGTGGTTTCATAGGTTCTGCCTCTTATGCCAGTGACAGGTGCCCAAGTACAC-----ACTTGATCATAACTC
i otoGar3.GL873550             C 0 I 313
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macNem1.NW_012013156v1         114318 4267 +    243043 M

a score=15129.000000
s hg38.chr6_GL000254v2_alt      1058172 65 +   4827813 tttctttctttctttctttctttctttctttctttctttttttttttttttttttttttgagacg
s panTro5.chr6                 30023817 55 + 175400573 tttatttatttatttatttatttatttatttatttatttatttattttc----------gagatg
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30254496 31 + 173848474 tttatttatttatttattta------------------------ttttc----------gagatg
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6056857 55 +   6154872 tttatttatttatttatttatttatttatttatttatttatttattttc----------gagatg
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74731945 47 + 122973662 tttatttatttatttatttatttattcattcattta--------ttttt----------gagatg
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30428999 27 + 172585720 tttatttatttatttatttctgcgaca--------------------------------------
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   114135 15 +    231697 TTTATTTATTTGTTT--------------------------------------------------
i macFas5.chr4_KE145577_random C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e otoGar3.GL873550             16909120 313 -  18854210 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e manLeu1.NW_012101121v1         152064 22 +    273075 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macNem1.NW_012013156v1         114318 4267 +    243043 M

a score=34413.000000
s hg38.chr6_GL000254v2_alt      1058237 19 +   4827813 gagtctcgctct-gtcgccc
s panTro5.chr6                 30023872 20 + 175400573 gagtctccctcttgttgccc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30254527 20 + 173848474 gagtctccctcttgttgtcc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6056912 20 +   6154872 gagtctccctcttgttgccc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74731992 20 + 122973662 gagtctcactcttgtcaccc
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30429026 20 + 172585720 gagtgtcgctctcgttaccc
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   114150 19 +    231697 -agtgttgctcttgtcgcct
i macFas5.chr4_KE145577_random C 0 C 0
s manLeu1.NW_012101121v1         152086 20 +    273075 gaatctcgctcttgttgcct
i manLeu1.NW_012101121v1       I 22 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e otoGar3.GL873550             16909120 313 -  18854210 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macNem1.NW_012013156v1         114318 4267 +    243043 M

a score=864272.000000
s hg38.chr6_GL000254v2_alt      1058256 335 +   4827813 aggctggagtgcagtggcgtgatctcagttcactgcaacctccgcctcccaggttcaagcaattctcctacctcagcctcctgagta----gctggaattataggcatccaccacgacacccaggtaatttttgtatttttagtagagacggggtttcaccatattgtccaggttggtctcaaactcctgacctcaggtgatccgccaacttcggccttccaaagtgctgggattacagacatgagccaccattcccggccCAC------AAATCTTTAAAGTGTCATTTTTCAAAATGCACCTTGTGTGCCATTCCTGACTGATTATTTGgaaa------tgaaagagaa
s panTro5.chr6                 30023892 334 + 175400573 aggctggagtgcagtggcgtgatctcagttcactgcaacctccgcctcccaggttcaagcaattctcctacctcagcctcctgagta----tctggaattataggcatccaccacgacacccaggtgatttttgtatttttagtagagacggggtttcaccatattgtccaggttggtctcaaactcctgacctcaggtgatccaccaacttcggccttccaaagtgctgggattacagacatgagccaccatttctggccCAC------AAATCTTTAAAGTGTCATTTTTCAAAATGCACCTTGTGTGCCATTCCTGACTGATTATTtg-aaa------tgaaagagaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30254547 334 + 173848474 aggctggagtgcagtggcgtgatctcagttcactgcaacctccgcctcccaggttcaagcaattctcctacctcagcctcctgagta----tctggaattataggcatccaccacgacacccaggtgatttttgtatttttagtagagacggggtttcaccatattgtccaggttggtctcaaactcctgacctcaggtgatccaccaacttcggccttccaaagtgctgggattacagacatgagccaccatttctggccCAC------AAATCTTTAAAGTGTCATTTTTCAAAATGCACCTTGTGTGCCATTCCTGACTGATTATTtg-aaa------tgaaagagaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6056932 335 +   6154872 tggctggagtgcagtggcgtgatctcagttcactgcaacctccgcctcccaggttcaagcaattctcctacctcagcctcctgagta----tctggaattataggcatccaccacgacacccaggtgatttttgtatttttagtagagacggggtttcaccatgttgtccaggttggtctcaaactcctgacctcaggtgatccaccaacttcggccttccaaagtgctgggattacagacatgagccaccattcctggccCAC------AAATCTTTAAAGTGTCATTTTTCAAAATGCACCTTGTGTGCCATTCCTGACTGATTATTTGgaaa------tgaaagagaa
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74732012 330 + 122973662 aggcaggagtgcagtggtgtgatctcggctcactgcaacctccacctcccatgttcaagagattctcctacctcagcct-ctgagca----gctaggattacaggcacctgccatgatgccaggctaatttttgtatttttcgtacagactgtgcttcaccatgttggccaggctggtctccaactcctgatctcaggtgatccacccacttcggcctcccaaagtgctgggattagagacatgagccaccgctcccggcTCAC------AAATATTTATAGTGGCAATTTTCAAAACGCACCTTGTGTGCCATTC----CTGATTATTTGgaaa------tgaaagagaa
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30429046 334 + 172585720 aggctggagtgcagtggtgtgatctcggctcactgcaaattccgcctcctgggtttaagtgattctcctgccttagcctcccgagta----gctagcattacaggcaccca-cacaacacccagctaatttttgtatttttagtagagactgggtttcaccatgttgaccaggctggtcttgaattcctgacctcagatgatctgcccacttcggtctctcaaagcgctgagattacaagcatgagccaccgctcctggccCAC------AAATCTTTAAGGTGTCATTTTTCAAAATTCACCTTGCATGCCATTCCTGATTGATTCGTTGgaaa------tgaaagagga
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   114169 339 +    231697 aggctggagtgcagtggtgtgatttcggctcactgcaacctccgcctcctgagttcaaaggattctcctgccccagcctcctgagta----gccaggattacaggcacgcaccacaactcctggctaatttttgtatttttagtagagac-gggtttcaccatgttgaccaggctggtctcagactcctgagttcaggtgatcta-ccacttcggcctaccaaattgctggaattataggcatgagccaccgctcctggccCAC------AAATCTTTAAAGTGGCATTTTTCAAAATGCACCTTGTGTGCCTTTCCTGATTGATTATTTGGAAATTCCTTTATATTATAA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         118588 334 +    243043 aggctggagtgcagtggtgtgatcttggctcactgcaacctccgcctcctgggttcaaaggattctcctgccccagactccagagta----gccaggattacaggcacgtgccacaactcctggctaatttttgtatttttagcagagac-aggtttcaccatgttaaccaggctggtctcaaactcctgagctcaggtgatccacccactttggcctaccaaattgctggaattacaggcatgagccactgctcctggccCAC------AAATCTTTAAAGTGGCATTTTTCAAAATGCACCATGTGTGCCTTTCCTGATTGATTATTTGgaaa------cgaaagataa
i macNem1.NW_012013156v1       M 4267 C 0
s manLeu1.NW_012101121v1         152106 343 +    273075 aggctggagtgcagtggtgcaatctcagctcactgcaacctctgcctcccgggttaaagggattttcctgcctcagcatcccgagtagctggctgggattacaggcacgcgccaccactcctggctaatttttgcattttcagtagagac-gggtttcaccatgttgaccaggctgctctcaaactcctgacctcagatgatccacccacttcagcctatgaaattgctgagattacaggcatgagccactgctcctggccCACCAAAAAAAAAAAAAAAAGTGACATTTTTCAAAATGCACC-TGTGTGCCTTTCCTGATTGATTATGTGgaaa------tgaaagagaa
i manLeu1.NW_012101121v1       C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e otoGar3.GL873550             16909120 313 -  18854210 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=136584.000000
s hg38.chr6_GL000254v2_alt      1058591 43 +   4827813 aagaaaataccaaagttcatctcaaggatccttagcaataact
s panTro5.chr6                 30024226 43 + 175400573 aagaaaataccaaagttcatctcaaggatccttagcaataact
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30254881 43 + 173848474 aagaaaataccaaagttcatctcaaggatccttagcaataact
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6057267 43 +   6154872 aagaaaataccaaagttcatctcaaggatccttagcaataact
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74732342 43 + 122973662 aagaaaacacaaaagttcattgcaaggatccctagtgataact
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30429380 43 + 172585720 gagaaaatattaaagttcatcgcaaggatccttagcgataact
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   114508 43 +    231697 AGgaatataccaaagttcaccacatggatcctcagcgataact
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         118922 43 +    243043 aggaatataccaaagttcaccacaaggatcctcagcgataact
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012101121v1         152449 43 +    273075 atgaaaataccaaagttcatcacaaggatccttagcgataact
i manLeu1.NW_012101121v1       C 0 I 544
s otoGar3.GL873550             16909433 43 -  18854210 aaaaaaaTTTCAAAGTTCATTGCCAAGATCCCTACTGAGAACT
i otoGar3.GL873550             I 313 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=34613.000000
s hg38.chr6_GL000254v2_alt      1058634 15 +   4827813 acacacgttaaaaca
s panTro5.chr6                 30024269 15 + 175400573 acacacgttaaaaca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30254924 15 + 173848474 acacacgttaaaaca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6057310 15 +   6154872 acacacgttaaaaca
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74732385 15 + 122973662 acatgcgttaaaaca
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30429423 15 + 172585720 actcatggtaaagca
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   114551 15 +    231697 actcatggtaaaaca
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         118965 15 +    243043 actcatggtaaaaca
i macNem1.NW_012013156v1       C 0 I 320
s otoGar3.GL873550             16909476 15 -  18854210 ACTTACATTGAAACA
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e manLeu1.NW_012101121v1         152492 544 +    273075 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=8190.000000
s hg38.chr6_GL000254v2_alt      1058649 2 +   4827813 aa
s panTro5.chr6                 30024284 2 + 175400573 aa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30254939 2 + 173848474 aa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6057325 2 +   6154872 aa
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74732400 2 + 122973662 aa
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30429438 2 + 172585720 aa
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   114566 2 +    231697 aa
i macFas5.chr4_KE145577_random C 0 I 319
s macNem1.NW_012013156v1         119300 2 +    243043 aa
i macNem1.NW_012013156v1       I 320 C 0
s manLeu1.NW_012101121v1         153036 2 +    273075 AA
i manLeu1.NW_012101121v1       I 544 C 0
s otoGar3.GL873550             16909491 2 -  18854210 AA
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138 0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=1000189.000000
s hg38.chr6_GL000254v2_alt      1058651 369 +   4827813 gccacagccaattgtaaagagtcatgtgacagagaggaccaggatctcatg-aaaaatagccttggctagaaagaggtcatttgaccctgggctaattggcaactctctacattgtctggcatacagtgttcaatctgatGTGCAAGGCAATTGTATCTTGCAAAGAATTTgagaatttgatatgttgctcacattttaccacacatacaagtggattaaacttttacacagtaaaaaaaa---aaagcattgttgagcaaaataaattaaatgaaaagac---ataaaggaataactagt--------------------------------------gatgaaatag-caataagaatggaaaacatgaaagagatgcttgtacagcaatgatagcagcacaaaagaacagtg
s panTro5.chr6                 30024286 371 + 175400573 gccacagccaattgtaaagagtcatgtgacagagaggaccaggatctcatg-aaaaacagccttggctagaaagaggtcatttgatcctgggctaattggcaactctctacattgtctggcatacaatgttcaatctgatGTGCAAGGCAATTGTATCTTGCAAAGAATTTgagaatttgatatgttgctcacattttaccacacatacaagtggattaaacttttacacagtaaaaaaaa-taaaagcattgttgagcaaaataaattaaatgaaaagac---ataaaggaataactagt--------------------------------------gatgaaatag-caataagaatggaaaacatgaaagagatgcttgtacagcaatgatagcagcacgaaagaacagtg
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30254941 371 + 173848474 gccacagccaattgtaaagagtcatgtgacagagaggaccaggatctcatg-aaaaacagccttggctagaaagaggtcatttgatcctgggctaattggcaactctctacattgtccggcatacaatgttcaatctgatGTGCAAGGCAGTTGTATCTTGCAAAGAATTTgagaatttgatatgttgctcacattttaccacacatacaagtggattaaacttttacacagtaaaaaaaa-taaaagcattgttgagcaaaataaattaaatgaaaagac---ataaaggaataactagt--------------------------------------gatgaaatag-caataagaatggaaaacatgaaagagatgcttgtacagcaatgatagcagcacaaaagaacagtg
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6057327 372 +   6154872 gccacagccaattgtaaagagtcatgtgacagagaggaccaggatctcatg-aaaaatagccttggctagaaagaggtcatttgacactgggctaattggcaactctctacattgtctggcatacaatgttcaatctgaCGTGCAAGGCAATTGTATCTTGCAAAGAATTTgagaatttgatatgttgctcacattttaccacacatacaagtggattaaacttttacacagtaaaaaaaaaaaaaagcattgttgagcaaaataaattaaatgaaaagac---atagaggaataactagt--------------------------------------gatgaaatag-caataagaatggaaaacatgaaagagatgcttgtacagcaatgatagcagcacaaaagaacagtg
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74732402 368 + 122973662 gccacagcaaattgtaaagagccatgtgacagatagtaacaggatgccatgaaaaaatagccttggctagaaataggtcatttgattcttggctaattggcaactctctacattctctggtatacaatgtccaatctgatGTGCAAGGCAATTTTATCTCGCAAAGAATTTgagaatttgatatgttgctcg-attttaccacacatacaagtgaattaaacttttacagaatagaaaaaa----aagcactgtcaagcaaaataaattaaataaaaagac---ataaaggaataactagt--------------------------------------gatgaaatag-caataagaatgtaaaatacgaaagagctgcttttactgcaacattagaagaacaaaataactgta
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30429440 364 + 172585720 gccacagccaattgtaaagaaccatgtgacagagaggaccaggatgccatg-aaaaatagccttggctagaaataggtcatttgatccttggctaattggcagctctctacattttctggtacacaatgttcactctgatGTgcaaggcaattttatcttgcaaagaatttcagaatttg-aatgttgctcatattttaccacatatacaagtgaattaaacttttacagaat------ag-aaaaaacatcgttgagcaaaataaattaaatgaaaagac---ataaaggaataactagt--------------------------------------gatgaaatag-cagtagaaatggaaaacacaaaagagctgcttttaaaacaatgttagaagcacaaaataacagtg
i rheMac8.chr4                 C 0 I 65716
s macFas5.chr4_KE145577_random   114887 346 +    231697 gccacagccaattgtaaggaaccatgtgacagagaggaccaggatgctatg-aaaaatagccttggctagaaataggtcatttgatccttggctaattgacagctctgtacattttctgatatacaatattcaatctgatGTGCAAGGCAATTGTATCTTGCAAAGAATTTGAGAATTTGAAATGTTGCTCACAT-------------------AATTAAACTtttacagaatcgc--aaa-aaaaagcattgttgaacaaaataaattaaatgaaaagac-----aagggaataactggt--------------------------------------aaggaaatgg-caataaga--aaaaaacacaaaagagctgcttctaaagcaccgttagaagcacaaaataactgca
i macFas5.chr4_KE145577_random I 319 C 0
s macNem1.NW_012013156v1         119302 344 +    243043 gccacagccaattgtaaggagccatttgacagagaggacca-gatgccatg-aaaaatagccttggctagaaataggtcatttgatccttggctaattgacagctctctacattttctgatatacaatcttcaatctgatGTGCAAGGCAATTGTATCTTGCAAAGAATTTGAGAATTTGAAATGTTGCTCACAT-------------------AATTAAACTtttacagaatcgtaaaaa-aaaaagcattgttgaacaaaa-----taaatgaaaagac-----aaaggaataactggt--------------------------------------aaggaaatag-caataagaacagaaaacacaaaagagctgcttctaaagcactgttagaagcacaaaataactgca
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012101121v1         153038 321 +    273075 GCCAcagccaattgtaagga-ccatgtgacagagaggaccaggatgccatg-aaaaatagacttggttagaaataggtcatttgatccttggctaattggcagctctctacattttctgatatacaatgttcgatttgatGTGCAAGGCAATTGTATCTTGCAAATACTTTgagaatttgatatgttactcacttgttaccacacatacaagtgaattaaacttatacagaatag----aa-aaaaagcattgttgagcaaaa-------------------------------------t--------------------------------------aataaaatag-caataagaatggaaaacacaaaagagctgctt-----------ttagaagcacaaaataacagtg
i manLeu1.NW_012101121v1       C 0 C 0
s otoGar3.GL873550             16909493 392 -  18854210 ACCACAGCCAACAGTAATGCACTATGTGACAGAAAAGACCAGGGTGCCATG--TAAGTAGCCCTGGCTAGCACACAGTCATTTGGCCCTTGACTCACTGGCAACTCTGTGGATTGTTTGGGATAGAAAGTTGAACCTGATGAGCAAGCCAATTCCatcttgcaaaggcgttag--------tatgttacttctat-ttaccatacaaacaactgaatcaaactt-tacagaatcagaaaag-cagaa----tgttgatcaaaataaatgaaataggaaaacattataaaagaataaccagtatctttccaagagtgatttaaaaaatggaataatcaaagatggaatagaaaatacgaataggaaacatg-cagagctgctt-taggaaaactttagaagcagatag----agtg
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=1013233.000000
s hg38.chr6_GL000254v2_alt      1059020 316 +   4827813 tttttcagaatcatacgggagtccaaatcacttctaccacatctaattaaaaaacacagtgaaagatgttaaactt-tcataggatgcccactgaatagccagttatt-gaaaaatcttgttcctagattggagtaaacaatttctgcctaccctagccaaac-aaattattgtcatgatg----ctaagctag-tgtatagacagaggtgtgagattcacatttttctaactgcaaagcaccctgattaggcaaatatttttgtagat---gcttgagtaagaaaattggcattttgggcattctt---aaaccgaattagaaacttct
s panTro5.chr6                 30024657 316 + 175400573 tttttcagaatcatactggagtccaaatcacttctaccacatctaattaaaaaacacagtgaaagatgttaaactt-tcataggatgcccactgaatagccagttact-gaaaaatcttgttcctagattggagtaaacaatttctgcctaccctagccaaac-aaattattgtcatgatg----ctaagctag-tgtatagacagaggtgtgagattcacatttttctaactgcaaagcaccctgattaggcaaatattttcgtagat---gcttgagtaagaaaattggcattttgggcattctt---aaaccaaattagaaacttct
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30255312 316 + 173848474 tttttcagaatcatactggagtccaaatcacttctaccacatctaattaaaaaacacagtgaaagatgttaaactt-tcataggatgcccactgaatagccagttact-gaaaaatcttgttcctagattggagtaaacaatttctgcctaccctagccaaac-aaattattgtcatgatg----ctaagctag-tgtatagacagaggtgtgagattcacatttttctaactgcaaagcaccctgattaggcaaatattttcgtagat---gcttgagtaagaaaattggcattttgggcattctt---aaaccaaattagaaacttct
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6057699 316 +   6154872 tttttcagaatcatactgaagtccaaatcacttctaccacatctaattaaaaaacacagtgaaagatgttaaactt-tcataggatgcccactgaatagccagttatt-gaaaaatcttgttcctagattggagtaaacaatttctgcctaccctagccaaac-aaattattgtcatgatg----ctaagctag-tgtgtagacagaggtgtgagattcacatttttctaactgcaaagcaccctgattaggcaaatatttttgtagat---gcttgagtaagaaaattggcattttgggcattctt---aaaccaaattagaaacttct
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74732770 316 + 122973662 tttttcagaatcatactggagtccaaatcacttctacca-atctaattaaaaaacacagcaaaagatgttaaactgatcaatggatgcccactgaatacccagttatt-gaaaaatcttgttcctagattggagttaaccatttccgcctaccacatcaaacc-aactcgttgtcgtgatg----ctaagctagctgtacagacaaagatgtgagacacat-tttttctaactgcaaagcgccctgattaggcaaatacttttgtagaa---gcttgagtaagaaaattggcattttgggcattctt---aaaaggaattagaaacttct
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30495520 317 + 172585720 tttttcagaatcatactgcagtccaaatcacttctaccacatctaatttaaaaacatagtgaaagatgttaaactaattataggatgtccactgaatagccagttact-ggaaaatattgttcctagactggagttaaccatttctgcctaccacatcagacc-aaatcattgtcatgatg----ctaagctag-tgtatagacagagatgtgagactcacatttttctaactgcaaagcaccctgattaagcaaatatttttgtagac---gcttgagtcagaaaatttgcattttgggcattctt---aaactgcattagaaacttct
i rheMac8.chr4                 I 65716 C 0
s macFas5.chr4_KE145577_random   115233 317 +    231697 tttttcagaatcatactgcagtccaaatcacttctaccacatctaatttaaaaacatagtgaaagatgttaaactaattataggatgtccactgaatagccagttact-ggaaaatattgttcctagactggagttaaccatttctgcctaccacatcagacc-aaatcattgtcatgatg----ctaagctag-tgtatagacagagatgtgagactcacatttttctaactgcaaagcaccctgattaagcaaatatttttgtagac---atttgagtcagaaaatttgcattttgggcattctt---aaactgcattagaaacttct
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         119646 317 +    243043 tttttcggaatcatactggagtccaaatcacttctaccacatctaattaaaaaacatagtgaaagatgttaaactaattataggatgtccactgaataaccagttact-gaaaaatcttgttcctagactggagttaaccatttctgcctaccacatcaaacc-aaatcattgtcatgatg----ctaagctag-ggtatagacagagatgtgagactcacatttttctaactgcaaagcaccctgattaagcaaatatttttgtagac---gcttgagtcagaaaatttgcattttgggcattctt---aaactgcattagaaacttct
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012101121v1         153359 322 +    273075 tttttcagaatcatattggagtccaaatcatttctgtcacatctaattaaaaaacacagtgaaagatgttaaacggatcataggatgctcactgaatagccagttatt-gaaaaatcttatccctagattgaagttaaccatttccatctaccacatcagacc-aaatcactatcatgatgctaactaagctagttacacaggtaaagatgtgagactcacaattttctaactgcaaagcaccctgattaggcaaatatttttgtagat---gcttgagtaagaaaatatgcattttGGCCATTCTT---Aaactgaattagaaacttct
i manLeu1.NW_012101121v1       C 0 C 0
s otoGar3.GL873550             16909885 313 -  18854210 cttttgagagtcacacagta-tctgaatcactctgaccacatctcattagaaaac--tgtgaaagaaactaaatctattataggttgcccagtgggtagctagtttttggaaaaacctagttcctagactggagttaaccatttttgcctactgtatcaaaccaaaattgttgtcataatg----ctaaagtaggtgtgcagactgaggcttgagactcacatttttctaacttacaagctatttaattaggtaaatacttctgaagatgaggtttgagtaaaaa----------ttcagtattcttgacaaactaaatttgaaaATTTT
i otoGar3.GL873550             C 0 I 188
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=549643.000000
s hg38.chr6_GL000254v2_alt      1059336 194 +   4827813 gaagagaaacaaacgtagttatgattgtaaaggcattattgtatggcaccaaagtcttgggacactttaatttagctactgta-ttttctcaactctgttgcaacttatcaaagagaatattaatattaaaggcatttacaaaaaaaatctgagatattgttgtatcttctttctctgtctcaaatatttaatca--
s panTro5.chr6                 30024973 194 + 175400573 gaagaaaaacaaacatagttatgattgtaaaggcattattgtatggcaccaaagtcttgggacactttaatttagctactgta-ttttctcaactctgttgcaacttatcaaagagaacattaatattaaaggcatttacaaaaaaaatctgagatattgttgtatcttctttctctgtctcaaatatttaatca--
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30255628 193 + 173848474 gaagaaaaacaaacatagttatgattgtaaaggcattattgtatggcaccaaagtcttgggacactttaatttagctactgta-ttttctcaactctgttgcaacttatcaaagagaacattaatattaaaggcatttac-aaaaaaatctgagatattgttgtatcttctttctctgtctcaaatatttaatca--
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6058015 194 +   6154872 gaagaaaaacaaacgtagttatgattgtaaaggcattattgtatggcaccaaagtcttgggacactttaatttagctactgta-ttttctcaactctgttgcaacttatcaaagagaacattaatattaaagacatttacaaaaaaaatctgagatattgttgtatcttctttctctgtctcaaatatttaatca--
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74733086 196 + 122973662 gaggaaaaacaaagatagttatgactgtaaagccattattgtatggcaccaaagtcttgggactctttgatctagttactgta-ttttctcaactttcttgcagctcatcaaagagaatattaatattaaaggcatttgcaaaaaaagtctgagatattgttgtatctcctttctctgtctcaaatttttattcatt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30495837 194 + 172585720 gaggaaaaacaaaggtagttatgattgtaaaggcattattgtatggcaccaaagtcttgggactctttgatctagctactgta-ttctctcaactttgttgcaacttgtcaaagagaatattaatattaaaggcatttgc--aaaaattctgagatcttgttgtatgtcccttctctgtctcaaatttttaatcaac
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   115550 194 +    231697 gaggaaaaacaaaggtagttaggattgtaaaggcattattgtatggcaccaaagtcttgggactctttgatctaactactgta-ttctctcaactttgttgcaacttgtcaaagagaatattaatattaaaggcatttgc--aaaaattctgagatcttgttgtatgtcccttctctgtctcaaatttttaatcaac
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         119963 194 +    243043 gaggaaaaacaaaggtagttatgattgtaaaggcattattgtatggcaccaaagtcttgggactctttgatctagctactata-ttctctcaactttgttgcaacttgtcaaagagaatattaatattaaaggcatttgc--aaaaaatctgatatcttgttgtatctcctttctctgtctcaaatttttaatcatc
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012101121v1         153681 195 +    273075 gaagaaaaacaaaggtagttatgattttaaaggcattattttatggcaccaaagtcttgggactctttgatctagctactgtatttttctcaactttgttgcaactcatcaaagacaacattaatattaaagtcatttgcaaaaaaattctgagatactgttctatctcctttctctgtctcaaatttttaatca--
i manLeu1.NW_012101121v1       C 0 C 0
e canFam3.chr12                  934279 44903 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e otoGar3.GL873550             16910198 188 -  18854210 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=294531.000000
s hg38.chr6_GL000254v2_alt      1059530 91 +   4827813 actttacagaagagaattttaaagtatt-aaaaaa----agtcagatacaagaagtatttgatttacaaaaccctgaaacaa----taatgttaattttg
s panTro5.chr6                 30025167 91 + 175400573 actttacagaagagaattttaaagtatt-aaaaaa----agtcagatacaagaagtatttgatttacaaaacccggaaacaa----taatgttaattttg
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30255821 92 + 173848474 actttacagaagagaattttaaagtattaaaaaaa----agtcagatacaagaagtatttgatttacaaagcccggaaacaa----taatgttaattttg
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6058209 91 +   6154872 actttacagaagagaattttaaagtatt-aaaaaa----agtcagatacaggaagtatttgatttacaaagtcctgaaacga----taatgttaattttg
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74733282 95 + 122973662 actttacaaaagataattttaaagtatt-aaagaaaattagtcagatataagaagtatttgatttacaaaatcctgaaacaa----taatgttaaTtgtg
i nomLeu3.chr1a                C 0 I 756
s rheMac8.chr4                 30496031 95 + 172585720 actttacaaaaaagaattttacagtatg-aaagaaagttagtcagatacaagaagtatttgatgtacaaaatcctgaaacaa----taatgttaattttg
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   115744 95 +    231697 actttacaaaaaagaattttacagtatg-aaagaaagttagtcagatacaagaagtatttgatgtacaaaatcctgaaacaa----taatgttaattttg
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         120157 95 +    243043 actttacaaaaaagaattttaaagtatg-aaagaaagttagtcagatacaagaagtatttgatttacaaaatcctgaaacaa----taatgttaattttg
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012101121v1         153876 92 +    273075 ---ttacaaaaaagaattttaaactatt-aaagaaaattagtcagatacaagaagtatttgatttacaaaatcctgaaacaa----taatgttaattttg
i manLeu1.NW_012101121v1       C 0 C 0
s canFam3.chr12                  979182 98 +  72498081 actttcca-aagagaaatttgaagcatt-caaggaaaataattgggtgaaagaagcatttgatttacaaaattctgaaataatatttagttTTGATTTtg
i canFam3.chr12                I 44903 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e otoGar3.GL873550             16910198 188 -  18854210 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=425623.000000
s hg38.chr6_GL000254v2_alt      1059621 163 +   4827813 cttttaacatgtttataaattctttgatac---tcctcctttccagaagtgcagcttcattccctccctgttcgtgtgg-cctggacttaatgactcacttctaactgatagagtaatgctgacataatagtttgtgattctgggtgta-gaacataagactcactga
s panTro5.chr6                 30025258 163 + 175400573 cttttaacatgtttataaattctttgatac---tcctcctttccagaagtgcagcttcattccctccctgttcgtgtgg-cctggacttaatgactcacttctaattgatagagtaatgctgacataatagtttgtgattctgggtgta-gaacataagactcactga
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30255913 163 + 173848474 cttttaacatgtttataaattctttgatac---tcctcctttccagaagtgcagcttcattccctccctgttcgtgtgg-cctggacttaatgactcacttctaactgatagagtaatgctgacataatagtttgtgattctgggtgta-gaacataagactcactga
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6058300 162 +   6154872 cttttaacatgtttataaattctttgatac----cctcctttccagaagtgcagcttcattccctccctgtgagtgtgg-cctggacttaatgactcacttctaactgatagagtaatgctgacataatagtttgtgattctgggtgta-gaacgtaagactcactga
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30496126 163 + 172585720 ctgTTaacatgcatataaattctttgattc---tcctcctttccagaggtgcagcttcattccctccctgtgagtgtgg-cctggacttaatgactcacttctaactgacagagtaatgctgacataatagtctgtgactctgggtgta-gaacataaaactcatggc
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   115839 163 +    231697 ctgTTaacatgcatataaattctttgattc---tcctcctttccagaggtgcagcttcattccctccctgtgagtgtgg-cctggacttaatgactcacttctaactgacagagtaatgctgacataatagtctgtgactctgggtgta-gaacataaaactcatggc
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         120252 163 +    243043 CTTTCaatatgcatataaattctttgattc---tcctccttttcagaggtgcagcttcattgcctccctgcaagtgtgg-cctgtacttaatgactcacttctaactgatacagtaatgctgacgtaatagtctgtgactctgagtgta-aaacataaaactcattgc
i macNem1.NW_012013156v1       C 0 C 0
s manLeu1.NW_012101121v1         153968 163 +    273075 ctgTTaacatgcatataaattctttgattc---tcctcctttccagaggtgcagcttcattccctccctgtgaatgagg-cctggacttaatgactcacttctaactgatagagtaatgctgacataataatctgtgactctggatgta-gaacaccagattcactgc
i manLeu1.NW_012101121v1       C 0 C 0
s canFam3.chr12                  979280 167 +  72498081 gttttaacaggttcacaaattctttgacaacaatcctcctttccagagatggatcttaatgtcctcctcctgagcatggacttgcactgaatgattcacttctaactgatagaa-aaggctgatgtgatggtgtgtgacccaggacctaggaacataaaacacattgc
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e otoGar3.GL873550             16910198 188 -  18854210 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e nomLeu3.chr1a                74733377 756 + 122973662 I

a score=687876.000000
s hg38.chr6_GL000254v2_alt      1059784 238 +   4827813 agtttctactt-----------------------------------tggttc--------tttctttctctggaatcatgagccctgggggaagctggctgtt-gtgtcataaggaggcctgtgg-----tccatgtgactaggaagtgagtcctcctgggaccagacaataagaagctaaagcctcttc-------------------caaaagccatgtgagagattcttgtgtcttgtgaatccc-cagccccatttgagccctcagatgattcagccctggaagaca---------------actagactgcaacgtt
s panTro5.chr6                 30025421 238 + 175400573 agtttctactt-----------------------------------tggttc--------tttctttctctggaatcatgagccctgggggaagctggctgtt-gtttcataaggaggcctgtgg-----tccatgtgactaggaagtgagtcctcctgggaccagacaataagaagctaaagcctcttc-------------------caaaagccacgtgagagattcttgtgtcttgtgaatccc-tggccccatttgagccctcagatgattcagccctggaagaca---------------actagactgcaacgtt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30256076 238 + 173848474 agtttctactt-----------------------------------tggttc--------tttctttctctggaatcatgagccctgggggaagctggctgtt-gtgtcataaggaggcctgtgg-----tccatgtgactaggaagtgagtcctcctgggaccagacaataagaagctaaagcctcttc-------------------caaaagccacgtgagagattcttgtgtcttgtgaatccc-tggccccatttgagccctcagatgattcagccctggaagaca---------------actagactgcaacgtt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6058462 238 +   6154872 agtctctactt-----------------------------------tggttc--------tttctttctctggaatcatgagccctgggggaagctggctgtt-gtgtcataaggaggcctgtcg-----tccatgtgactaggaagtgagtcctcctgggaccagacaataagaagctaaagcctcttc-------------------cgaaagccacgtgagagattcttgtgtcttgtgaatccc-cggccccatttgagccctcagatgattcagccctggaagaca---------------actagactgcaacgtt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74734133 246 + 122973662 agcttctactttggt-----------------------------tctggttc--------tctctttctctgggatcatgagccttggggcaagccagctgct-gtgtcataagcaggcctgtggaaagctccaagtgactaggaagtgaggcctcctgcggccagacaataaga---tgaagcctcttc-------------------caacagtcacgtgggatattcttgtgtcttgtgaatccc-cagccctatttgagccctcagatgataaagccctggatgaca---------------actagactgcaacgtt
i nomLeu3.chr1a                I 756 C 0
s rheMac8.chr4                 30496289 226 + 172585720 agcttctactt-----------------------------------tggttc--------tctctttctctgggatcatgagccctgggggcagccgactgct-gtgtcataagcaggcctgtggcaaggtccatgtgactagg-agtga----------------ataataagaagctgaagcctcttc-------------------caacagccatgtgagagattcctgtgtcttgtgaactcc-caggcccatttgaaccctcagacaatttagccctggatgaca---------------actggactgcaacttt
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   116002 226 +    231697 agcttctactt-----------------------------------tggttc--------tctctttctctgggatcatgagccctgggggcagccgactgct-gtgtcataagcaggcctgtggaaaggtccatgtgactagg-agtga----------------ataataagaagctgaagcctcttc-------------------caacagccatgtgagagattcctgtgtcttgtgaactcc-caggcccatttgaaccctcagacaatttagccctggatgaca---------------actggactgcaacttt
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012013156v1         120415 242 +    243043 agcttctactt-----------------------------------tggttc--------tccctttctctgggatcatgagccctgggggaagccggctgct-gtgtcatcagcaggcctgtggaaaggcccatgtgactagg-agtgaggcctcctgggaccagacaacaagaagctgaagcctcttc-------------------caacagccatgtgagagattcctgtgtcttgtgaattct-cagacccatttgaaccctcagacaatttagccctggatgaca---------------actggactgcaacttt
i macNem1.NW_012013156v1       C 0 N 0
s manLeu1.NW_012101121v1         154131 243 +    273075 agcttctactt-----------------------------------tggttc--------tctctttctctgggatcatgagccctgggagaagccagctgctggtgtcataagcaggcctgtgaaaaggtccatgtgactagg-agtgaggcctcctgggaccagacaagaagaacctgaagcctcttc-------------------caacagccatgtgagagattcttgtgtcttgtgaatccc-caggcccatctgagccctcagatgattcagccctggatgaca---------------actagactgcaacttg
i manLeu1.NW_012101121v1       C 0 C 0
s canFam3.chr12                  979447 318 +  72498081 agcttctacctggctttttctctctctttttgtctgtctgtctctctgtttctgtatctgtctctgtctctgg--ttacttgcactgggggaaga-agctacc-tagttattagctacctaatggaaaagtccacacagctaggaactgaggccccttgggaccatctgggaaggaaatgaggcctcttcctcatttcctcatttccctcaacagccatgtgagggagccttatgtcctaggaatccctcagccccagtcaagccatcagatgatgcagtcctgtctgacaacccagtcctgtctgacttgactgcaaccca
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e otoGar3.GL873550             16910198 188 -  18854210 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=389010.000000
s hg38.chr6_GL000254v2_alt      1060022 118 +   4827813 gtgagaggccctgagccagaagcattcag--agaaacttctcctggattcctgaccatggataactgtgggagatgataaatatttgttgatttgagctgctaagttgtaggtgacttgt
s panTro5.chr6                 30025659 118 + 175400573 gtgagaggccctgagccagaagcattcag--agaaacttctcctggattcctgaccatggataactgtgggagatgataaatatttgttgatttgagctgctaagttgtaggtgacttgt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30256314 118 + 173848474 gtgagaggccctgagccagaagcattcag--agaaacttctcctggattcctgaccatggataactgtgggagatgataaatatttgttgatttgagctgctaagttgtaggtgacttgt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6058700 118 +   6154872 gtgagaggccatgagccagaagcattcag--agaaacttctcctggattcctgaccatggataactgtgggagatgataaatatttgttgatttgagctgctaagttgtaggtgacttgt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74734379 118 + 122973662 gtgagaggccctgagtcagaagaactttg--acaaacctctcctggattcctgaccactagaaactgtgggacatgaaaaatatttgttgatttgagttgctaagttttaagtgacttgt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30496515 118 + 172585720 gtgagaggccctaagtcagaagctcacag--agaaacctctcctgcattcctgaccattggaagctgtgccagatggcaaatatttgttgatttgagctgctaagtttgaggtgacttgt
i rheMac8.chr4                 C 0 I 60537
s macFas5.chr4_KE145577_random   116228 118 +    231697 gtgagaggccctaagtcagaagcattcag--agaaacctctcctgcattcctgaccattggaagctgtgccagatggcaaatatttgttgatttgagctgctaagtttgaggtgacttgt
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          12148 118 +   1495729 Gtgagaggccctgagccagaagcactcag--agaaacgactcctggattcctgaccactagaaactgtgggacatgataaatatttgttgatttgagctgctaagttttaagtgacttgt
i macNem1.NW_012012100v1       N 0 C 0
s manLeu1.NW_012101121v1         154374 118 +    273075 gtgagaggccctgagtccgaagctcacag--agaaacctctcctggattcctgaccattggaaactgtgagagatgataaatatttcttgatctgagctgctaagttttaggtgacttgt
i manLeu1.NW_012101121v1       C 0 C 0
s canFam3.chr12                  979765 120 +  72498081 gagagaggccctgagacagaagcactcaggtataagcctctcctggattcctgaccctgggaaactgtgggacacaatatatatttgttgttctgagctgctatgctgtggataatttgt
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e otoGar3.GL873550             16910198 188 -  18854210 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=6489.000000
s hg38.chr6_GL000254v2_alt      1060140 3 +   4827813 tat
s panTro5.chr6                 30025777 3 + 175400573 tat
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30256432 3 + 173848474 tat
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6058818 3 +   6154872 tat
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74734497 3 + 122973662 cat
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30557170 3 + 172585720 tat
i rheMac8.chr4                 I 60537 C 0
s macFas5.chr4_KE145577_random   116346 3 +    231697 caT
i macFas5.chr4_KE145577_random C 0 T 79696
s macNem1.NW_012012100v1          12266 3 +   1495729 tat
i macNem1.NW_012012100v1       C 0 C 0
s canFam3.chr12                  979885 3 +  72498081 tag
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e otoGar3.GL873550             16910198 188 -  18854210 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138 0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e manLeu1.NW_012101121v1         154492 0 +    273075 C
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=117822.000000
s hg38.chr6_GL000254v2_alt      1060143 43 +   4827813 gcagcagtagataactaatacaGCTTCACAAG-AGAGGATGAAT
s panTro5.chr6                 30025780 43 + 175400573 gcagcagtagataactaatacaGCTTCACAAG-agaggatgaat
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30256435 43 + 173848474 gcagcagtagataactaatacaGCTTCACAAG-agaggatgaat
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6058821 43 +   6154872 gcagcagtagataactaatacaGCTTCACAAG-agaggatgaat
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74734500 43 + 122973662 gcatcagtagataactaatacaCCTTCACAAG-AGAGGATGAAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30557173 43 + 172585720 gcagcagtagataactaatataCCTTcccaag-agaggatgaat
i rheMac8.chr4                 C 0 T 60583
s macFas5.chr4_KE145577_random    36653 43 +    231697 gcagcagtagataactaatacaGCTTCACAAG-AGAGGATGAAT
i macFas5.chr4_KE145577_random T 79696 C 0
s macNem1.NW_012012100v1          12269 43 +   1495729 gcagcagtacataactaatataCCTTCACAAG-AGAGGATGAAT
i macNem1.NW_012012100v1       C 0 C 0
s canFam3.chr12                  979888 44 +  72498081 gcaccagtacataactattataGAgtccaaagaagagaatgaag
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e otoGar3.GL873550             16910198 188 -  18854210 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e manLeu1.NW_012101121v1         154492  0 +    273075 C
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=7235.000000
s hg38.chr6_GL000254v2_alt      1060186 3 +   4827813 CAC
s panTro5.chr6                 30025823 3 + 175400573 cac
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30256478 3 + 173848474 cac
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6058864 3 +   6154872 cac
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74734543 3 + 122973662 CAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30496633 3 + 172585720 caT
i rheMac8.chr4                 T 60583 C 0
s macFas5.chr4_KE145577_random    36696 3 +    231697 CAA
i macFas5.chr4_KE145577_random C 0 I 79650
s macNem1.NW_012012100v1          12312 3 +   1495729 CAT
i macNem1.NW_012012100v1       C 0 C 0
s manLeu1.NW_012101121v1         154492 3 +    273075 caT
i manLeu1.NW_012101121v1       C 0 C 0
s canFam3.chr12                  979932 3 +  72498081 tat
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e otoGar3.GL873550             16910198 188 -  18854210 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138 0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=314791.000000
s hg38.chr6_GL000254v2_alt      1060189  96 +   4827813 TGAACT----TTTTCATTTGCTCTAAATTCATTATAAGATATTAAACAT-GTCATTTGCTTTTAATATTTAATAAAAATTTCCATGGCTA----TATAAGATATA
s panTro5.chr6                 30025826  96 + 175400573 tgaact----ttttcatttgctctaaattcattataagatattaaacat-gtcatttgcttttcatatttaataaaaatttccatggcta----tataagatata
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30256481  96 + 173848474 tgaact----ttttcatttgctctaaattcattataagatattaaacat-gtcatttgcttttcatatttaataaaaatttccatggcta----tataagatata
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6058867  96 +   6154872 tgaact----ttttcatttgctctaaattcattataagatattaaacat-gtcatttgcttttcatatttaataaaaatttccatggcta----tataagatata
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74734546  96 + 122973662 TGAACT----TTTTCATTTGCTCTAAATTGATTATAAGATACTAAATAT-GTCATTTGCTTTTAATATTTAAGAAGAATTTTCATGGCTA----TATAAGATCTA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30496636  96 + 172585720 TGAACT----TTTTCATTTGCTCTAAATTCATTATAAGATACTAAACAT-GTCATTTGCTTTTAATATTTAATAAAAATTTACATGGCTA----TATAAGATATA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   116349  96 +    231697 TGAACT----TTTTCATTTGCTCTAAATTCATTATAAGATACTAAACAT-GTCATTTGCTTTTAATATTTAATAAAAATTTACATGGCTA----TATAAGATATA
i macFas5.chr4_KE145577_random I 79650 C 0
s macNem1.NW_012012100v1          12315  96 +   1495729 TGAACT----TTTTCATTTGCTCTAAATTGATTATAAGATATTAAACAT-GTCATTTGCTTTTAATATTTAAGAAGAATTTTCATGACTA----TATAAGATCTA
i macNem1.NW_012012100v1       C 0 C 0
s manLeu1.NW_012101121v1         154495  96 +    273075 TGAACC----ttttcgtttgctctaaattcattataagatatcaaacgt-gtcatttacttttaatatttaagaaaaatgtccatggcta----tatgagatata
i manLeu1.NW_012101121v1       C 0 C 0
s canFam3.chr12                  979935 103 +  72498081 tgcactttaatttcgattggctctaaattaactat--gatattaaacatcatctattggttttaagatttaagaagaatatctatgtctaagggaacagaatgca
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e otoGar3.GL873550             16910198 188 -  18854210 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=728835.000000
s hg38.chr6_GL000254v2_alt      1060285 219 +   4827813 TTTTATTATCATTAACAATGA-----------------TCTA-----TTT-TTTGATCTTCAACTTGT----ATGTTCTATTTAAACATGAAAGGAAGATCCAGGCTA-GCtaggctgattctatgatgacaccccaataacca-cccttggtttctcaggttaccccagttactcagtt-gacactaaagcaggtgctgctgtgaagaggttttgcagatatatttaaagtcc--------------------------------------------------------------------------------------------------ccagtc----------------------agttgactt
s panTro5.chr6                 30025922 220 + 175400573 ttttattatcattaacaatga-----------------tcta-----ttt-tttgatcttcaacttgt----atgttctatttaaacacgaaaggaagatccaggctatgctaggctgattctatgatgacaccccaataacca-cccttggttactcaggttaccccagttactcagtt-gacactaaagcaggtgctgctgtgaagaggttttgcagatatatttaaagtcc--------------------------------------------------------------------------------------------------ccagtc----------------------agttgactt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30256577 220 + 173848474 ttttattatcattaacaatga-----------------tcta-----ttt-tttgatcttcaacttgt----atgttctatttaaacacaaaaggaagatccaggctatgctaggctgattctatgatgacaccccaataacca-cccttggttactcaggttaccccagttactcagtt-gacactaaagcaggtgctgctgtgaagaggttttgcagatatatttaaagtcc--------------------------------------------------------------------------------------------------ccagtc----------------------agttgactt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6058963 220 +   6154872 ttttattatcattaacaatga-----------------tcta-----ttt-tttgatcttcaacttgt----atgttctatttaaacacgaaaggaagatccaggctatgctaggctgattctatgatgacaccccaataacca-cccttggttactcaggttaccccagttactcagtt-gacactaaagcaggtgctgctgtgaagaggttttgcagatatatttaaagtcc--------------------------------------------------------------------------------------------------ccagtc----------------------agttgactt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74734642 225 + 122973662 TTTTATTATCATTAACAACGA-----------------TCTATTTTTTTT-TTTTACCTTCAATTTGT----ATGTTCTATTCAAACACAAAAGGAAGATCCAGGCtatgctgggctgattctatgatgacaccccaataacca-cccttggttactcacgttaccccagttactcaggt-gacactaatataggtgcttctgtgaagggattttgcagttatatttcaggtgc--------------------------------------------------------------------------------------------------cccatc----------------------agttgactt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30496732 220 + 172585720 TTTTATTATCATTAACAGTGA-----------------TCTA-----TTT-TTTTATCTTCAATTTGT----ATGTTCTATTTAAACACAAAAGGAAGATCCAGGCTAAGCtaggctgattctatgatgacaccccaataacca-cccttggttactcacattaccccagttactcattt-gacactaatgcaggtgctgctgtgaaggggttttgcagatagatttcaggtcc--------------------------------------------------------------------------------------------------ccagtc----------------------agttgactt
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   116445 220 +    231697 TTTTATTATCATTAACAGTGA-----------------TCTA-----TTT-TTTTATCTTCAATTTGT----ATGTTCTATTTAAATACAAAAGGAAGATCCAGGCTAAGCtaggctgattctatgatgacaccccaataacca-cccttggttactcacgttaccccttttactcagtt-gacactaatgcaggtgctgctgtgaaggggttttgcagatagatttcaggtcc--------------------------------------------------------------------------------------------------ccagtc----------------------agttgactt
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          12411 234 +   1495729 TTTTATTGTCATTAACAATGATAACAATGATCTATTTTTTTT-----TTT-TTTTACCTTCAATTTGT----ATGTTCTAGTCAAACACAAAAGGAAGATCCAGGCTATGCTAGGCTGATATTATGATGACACCTCAATAACTA-cccttggttactcacgttaccccagttactcagtt-gacactaatgcaggtgctgctgtgaaggggttttgcagatagatttcaggtcc--------------------------------------------------------------------------------------------------t--gtc----------------------agttg-ctt
i macNem1.NW_012012100v1       C 0 C 0
s manLeu1.NW_012101121v1         154591 220 +    273075 ttttattatcattaacagtga-----------------ccta-----ttt-tttgacctccaatttgc----atgttctatttaaatacaaaaggaagatccaggctatgctaggctgattttatgatgacaccccaataacca-cccttggttactcatgttaccccagttactcagtt-gacactaatgcaggtgctgctgtgaaggggatttgcagatagatttcaggtcc--------------------------------------------------------------------------------------------------ccagtc----------------------agttgactt
i manLeu1.NW_012101121v1       C 0 C 0
s otoGar3.GL873550             16910386 216 -  18854210 TTTTTTTACTTTGAAAAGATA-----------------TTTA-----TTT-TATCACAGTTATACTG------TGACCTATT-AAACAGAAAGGGAAGATCCAGGCCATGTCaggctgattttatgatggt-ctccagtaaccacccccttattatgcaccttcccccaggtattcaatc-aacactaatgtagatgctgctgcgaa-aggacttgctgatataattaaagtca--------------------------------------------------------------------------------------------------cagatc----------------------agttggctt
i otoGar3.GL873550             I 188 C 0
s canFam3.chr12                  980038 344 +  72498081 tattattaccattcacaacaa-----------------tcta-----tttatttggagtttgatttctgacggtaaaccaattaaaca--aaaggaagaagcaggctGTCCtaggcagatgctaagatggc-ctgccataactaacctctggttattcatattcttccagttgttggatcaaacactaatccaggtgctagcgtgaaaggactttgcatatgcagtgaaggttcagatcagctgcatttaaaacaggaggattgggcagccggagtggctcagcagtttagcaccaccttcagcccagggtatgatcctggagacccaggatccagtcccacgtcgggctccctgcatggagcctactt
i canFam3.chr12                C 0 I 136
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=319775.000000
s hg38.chr6_GL000254v2_alt      1060504 83 +   4827813 --taagatgaggattatcct-gcttag-acggtcctaatcaggtaagctctgaaaaggactgggttcttcctgagaatagagactca
s panTro5.chr6                 30026142 83 + 175400573 --taagatgaggattatcct-gcttag-acggtcctaatcaggtaagctgtgaaaaggactgggttcttcctgagaatagagactca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30256797 83 + 173848474 --taagatgaggattatcct-gcttag-acggtcctaatcaggtaagctctgaaaaggactgggttcttcctgagaatagagactca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6059183 83 +   6154872 --taagatgaggattatcct-gcttag-acggtcctaatcaggtaagctctgaaaaggactgggttcttcctgagaatagagactca
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74734867 83 + 122973662 --taagatggggattatcct-actggg-actgtcctaatcaggtaagctctgaaaaggactgggttcctcctgagaatagagactca
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30496952 83 + 172585720 --gaggatggggattatccg-gcttgg-actgtcctaatcaggtaagctctgaaaaggactgggttcttcctgagaatagagactca
i rheMac8.chr4                 C 0 N 0
s macFas5.chr4_KE145577_random   116665 83 +    231697 --gaggatggggattatccg-gcttgg-actgtcctaatcaggtaagctctgaaaaggactgggttcttcctgagaatagagactca
i macFas5.chr4_KE145577_random C 0 T 79651
s macNem1.NW_012012100v1          12645 83 +   1495729 --gaagatggggattatcct-gcttgg-actgtcctaatcaggtaagctctgaaaaggactgggttcttcctgagaacagagactaa
i macNem1.NW_012012100v1       C 0 C 0
s manLeu1.NW_012101121v1         154811 83 +    273075 --gaagatgggaattatcct-gcttgg-actgtcctaatcaggtaagctctgaaaaggactgggttcttcctgagaatagagactca
i manLeu1.NW_012101121v1       C 0 C 0
s otoGar3.GL873550             16910602 82 -  18854210 --taagacagtgattatcctggattga-actgtcctaatcaggtaagttcttaaga-gattgggttcatcctgagtaca-agattca
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  980518 86 +  72498081 taaaataggaggattatccc-aagtagtcctgacctaatcaggtgagcccttaatagcacagggtgcttcctgagtgaagggactgg
i canFam3.chr12                I 136 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=173651.000000
s hg38.chr6_GL000254v2_alt      1060587 57 +   4827813 cagtgtgagagggattcagcgtgaggggcttcctccactttgggctttgaaaatgga-
s panTro5.chr6                 30026225 57 + 175400573 cagtgtgagagggattcagcgtgaggggcttcctccactttgggctttgaaaacgga-
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30256880 57 + 173848474 cagtgtgagagggattcagcgtgaggggcttcctccactttgggctttgaaaacgga-
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6059266 57 +   6154872 cagtgtgagagggattcagcgtgaggggcttcctccactttgggctttgaaaatgga-
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74734950 57 + 122973662 cagtgtgagagggattcagtgtgaggggcttcctccactgtgggctttgaaaatgga-
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30628176 56 + 172585720 cagtgt-agaggggctcagtgtgaggggtttcccccactgtgggctttgaaaatgga-
i rheMac8.chr4                 N 0 C 0
s macFas5.chr4_KE145577_random    37097 56 +    231697 cagtgt-agagggattcagcgtgaaggatttccaccaccatgagctttgaaaatgga-
i macFas5.chr4_KE145577_random T 79651 I 79595
s macNem1.NW_012012100v1          12728 56 +   1495729 cagtgt-agaggggttcagtgtgaggggtttcctccactgtgggctttgaaaaggga-
i macNem1.NW_012012100v1       C 0 C 0
s manLeu1.NW_012101121v1         154894 56 +    273075 cagtgt-agaaggattcagcgtgaggggtttcctccactgtgggctttgaaaatgga-
i manLeu1.NW_012101121v1       C 0 C 0
s otoGar3.GL873550             16910684 43 -  18854210 cagtgagagag------agcctggtgagtctcc--------ggcctttgaaagtgga-
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  980604 44 +  72498081 aagagtgagcaggattcattgtgagtgg-------------aggcttt-atgatggaa
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=14157.000000
s hg38.chr6_GL000254v2_alt      1060644 4 +   4827813 ggga
s panTro5.chr6                 30026282 4 + 175400573 ggga
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30256937 4 + 173848474 ggga
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6059323 4 +   6154872 ggga
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74735007 4 + 122973662 ggga
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30628232 4 + 172585720 ggga
i rheMac8.chr4                 C 0 N 0
s macNem1.NW_012012100v1          12784 4 +   1495729 ggga
i macNem1.NW_012012100v1       C 0 C 0
s manLeu1.NW_012101121v1         154950 4 +    273075 ggga
i manLeu1.NW_012101121v1       C 0 C 0
s otoGar3.GL873550             16910727 2 -  18854210 --ga
i otoGar3.GL873550             C 0 I 2
s canFam3.chr12                  980648 4 +  72498081 gggg
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138 0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macFas5.chr4_KE145577_random    37153 79595 +    231697 I

a score=3526032.000000
s hg38.chr6_GL000254v2_alt      1060648  992 +   4827813 tcatg-----gggaaagaacactggtggccaataggaattagaagccctccccactgtctactctgatagcctg-aagg-aaacagggaccttaatcctacaattgccagaaaccgaattctgccaacaaactctacataagcttgggggagaaccccaatcttaagatgaggatacagctttgcgaaactctgaacaaagagtctatca-cattaggcctggatttctga-tgaaggaaatgtagacaaataaatgggtgctgttttcagccactaagtttgtgg-taattggttatgtactgcc-------------aggaaataaataAACAGATTCAAAGGATAAGTATATGACATTTTCTCCACCG---GAATGAATTCATGAACTGATATGCATAGTAGTTGCATAAAACCAAATATTTCCTAACTTGCTTTGCATTTTCCATTTCATGATTTTTGTGTGATACAATTTTGAAC--ACAATTATATTTCattcattcattcaacaaaaattaacttagtgcctactatgtggcagatatacttttatattctgtagatacaactttgatcaaaacaacccaaagcccctgtgct--t-gtgccttccattctagaggCTTCTTGAgagtaagatggagccattagaggcttttaagtgaagaaatgacacaatctgactcacattagcaggattgctgacctttgtg-gggagaacagtcatgggcagcaggcaa-gggacagagctagggacacaattcagtagTGACAGAGTAGTAGAGACTAAGGGGAGAGGAGGGCCTGAAGGATGACAGGGACAGAGAGAAGGGCTGGAGAAGCAGGAGGTGAGGTAAAGGAACAGAGAGAAAGAATTCTAAAGCAATGGAATTCTCAGAC-TTAAATACAGTG---------TTTTATAGATTTTTAATGCATTTATCCGCAAAGCCTGGCACAGTGTTACTTGCACCTTGGTCTTTAATGCATTCTGTGGGGCTGTCTAAAAGCTAATTGCCTCTCTAAGAT
s panTro5.chr6                 30026286  991 + 175400573 tcatg-----gggaaagaacactggtggccaataggaattagaagccctccccactgtctactctgatagcccg-aagg-aaacagggaccttaatcctacaattgccagaaaccgaattctgccaacaaactctacataagcttgggggagaaccccaatcttaagatgaggatacagctttgcgaaactctgaacaaagagtctatca-cattaggcctggatttctga-tgaaggaaatgtagacaaataaatgg-tgctgttttcagccactaagtttgtgg-taattggttatgtactacc-------------aggaaataaataaacagattcaaaggataagtatatgacattttctccaccg---gaatgaattcatgaactgatatgcatagtagttgcataaaaccaaatatttcctaacttgctttgcattttccatttCATGATTTTTGTGCGATACAATTTTGAAC--ACAATTATATTTCattcattcattcaacaaaaattaacttagtgcctactatgtggcacatatacttttattttctgtagacacaactttgatcaaaacaacccaaagcccctgtgct--t-gtgccttccattctagaggCTTCTTGAgagtaagatggagccattagaggcttttaagtgaagaaatgacacaatctgacttacattagcaggattgctgacctttgtg-gggagaacagtcatgggcagcaggcga-gggacagagctagggacacaattcagtagTGACAGAGTAGTAGAGACTAAGGGGAGAGGAGGGCCTGAAGGATGACAGGAACAGAGAGAAGGGCTGGAGAAGCAGGAGGTGAGGTAAAGGAACAGAGACAAAGAATTCTAAAGCGATGGAATTCTCAGAC-TTAAATACAGTG---------TTTTATAGATTTTTAATGCATTTATCCGCAAAGCCTGGCACAGTGTTACTTGCACCTTGGTCTTTAATGCATTCTGTGGGGCTGTCTAAAACCTAATTGCCTCTCTAAGAT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30256941  991 + 173848474 tcatg-----gggaaagaacactggtggccaataggaattagaagccctccccactgtctactctgatagcccg-aagg-aaacagggaccttaatcctacaattgccagaaaccgaattctgccaacaaactctacataagcttgggggagaaccccaatcttaagatgaggatacagctttgcgaaactctgaacaaagagtctatca-cattaggcctggatttctga-tgaaggaaatgtagacaaataaatgg-tgctgttttcagccactaagtttgtgg-taattggttatgtactacc-------------aggaaataaataaacagattcaaaggataagtatatgacattttctccaccg---gaatgaattcatgaactgatatgcatagtagttgcataaaaccaaatatttcctaacttgctttgcattttccatttCATGATTTTTGTGCGATACAATTTTGAAC--ACAATTATATTTCattcattcattcaacaaaaattaacttagtgcctactatgtggcagatatacttttattttctgtagacacaactttgatcaaaacaacccaaagcccctgtgct--t-gtgccttccattctagaggCTTCTTGAgagtaagatggagccattagaggcttttaagtgaagaaatgacacaatctgactcacattagcaggattgctgacctttgtg-gggagaacagtcatgggcagcaggcga-gggacagagctagggacacaattcagtagTGACAGAGTAGTAGAGACTAAGGGGAGAGGAGGGCCTGAAGGATGACAGGAACAGAGAGAAGGGCTGGAGAAGCAGGAGGTGAGGTAAAGGAACAGAGAGAAAGAATTCTAAAGCGATGGAATTCTCAGAC-TTAAATACAGTG---------TTTTATAGATTTTTAATGCATTTATCCGCAAAGCCTGGCACAGTGTTACTTGCACCTTGGTCTTTAATGCATTCTGTGGGGCTGTCTAAAACCTAATTGCCTCTCTAAGAT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6059327  992 +   6154872 tcatg-----gggaaagaacactggtggccaataggaattagaagccctccccactgtctactctgatagcccg-aagg-aaacagggaccttaatcctacaattgccagaaaccgaattctgccaacaaactctacataagcttgggggagaaccccaatcttaagatgaggatacagctttgcaaaactctgaacaaagagtctatca-cattaggcctggatttctga-tgaaggaaatgtagacaaataaatgggtgctgttttcagccactacgtttgtgg-taattggttatgtactacc-------------aggaaataaataaacagattcaaaggataagtacatgacattttctccaccg---gaatgaattcatgaactgatatgcatagtagttgcataaaaccaaatatttcctaacttGCTTTGCATTTTCCATTTCATGATTTTTGTGCGATACAATTTTGAAC--ACAATTATATTTCattcattcattcaacaaaaattaacttagtgccaactatgtggcagatatacttttatattctgtagacacaactttgatcaaaacaacccaaagcccctgtgct--t-gtgccttccattctagaggCTTCTTGAgagtaagatggagccattagaggcttttaagtgaagaaatgacacaatctgactcacattagcaggattgctgacctttgtg-gggagaacagtcatgggcagcaggcga-gggacagagctagggtcacaattcagtagtgacagagtagtagagactaaggggagaggagggcctgaaggatgacaggaacagagagaagggctggaGAAGCAGGAGGTGAGGTAAAGGAACAGAGAGAAATAATTCTAAAGCGATGGAATTCTCAGAC-TTAAATACAGTG---------TTTTATAGATTTTTAATGCATTTATCCGCAAAGCCTGGCACAGTGTTACTTGCACCTTGGTCTTTAATGCATTCTGTGGGGCTGTCTAAAACCTAATTGCCTCTCTAAGAT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74735011 1002 + 122973662 tcatg-----gggaaagaacaccggtggccaataggaattagaagcccttcccactgtctactctgatagcctg-aagg-aaacagggaccttagtcctacaattaccagaaaccgaattctgccaacgagctctatataagcttgggggagaa-cgcaatcttaagatgagcatacagctttgcgaaaccctgaacaaagaatctctca-cactaggcctgcagttctga-tgaaggaaatgcagacaaataaatgtgtgctctttaaagccactaagtttgtgg-taagtggttatgtaCTACCAATTTTTATGAATAGAAAATTCATAAACAGATTCAACAGCTAAGCATATGACATTTTCTCCactg---gaatgaatttatgaacagatatgcatagtagttgcataaaaccaaatgtttcctaacttgctttgcatttttcattttgtgatttttgtgtgatacaatttttaac--acaataatatttcattcattc-----aagaaaattaacttagtgcctactatgtgccagatatgcttttatatgctgcagacacaactttgatcaaaacaacccaaagcccctgtgctcat-gtgccttccattctagaggCTTCTCGAgagtaagatggagccattggggtgttttaagtgaagaactgacacaatctgactcacattagcaggatttctgaccattgtg-gggagaacagtcacgggcagcaggcgagggGACAGAGCTAGGGCCACAATTCAGTAGTGACAGAGTAGTAGAGACTAAGGGGAGAGGAGGGCCTGATGGGTGACAGGGACAGACAGAAGGGCTGGAGAAGCAGGAGGTAAGGTAAAGGAACAGAGAGAAAGAATTCTAAAGCAATAGAATTCTCAGAC-TTAAACACAGTG---------TTTTATAGATTTGTAATCCATTTATCCTCAGAGCTTGGCACAGTGTTACTTGCACCTTGGTCTTTAATACATTCTGTGGGGCAGTCTAATAACTAATTGCCTCCTTACGAT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30497035  991 + 172585720 tcatg-----gggaaagaacactggtggccaataggaattagaaactctccccactgtctactctgatagccca-aagg-aaacaggtaccttagtcccacaattgccagaaaccaaattctgccaacaagctccacataagcttgggggagaatcacaatcttaag-tgagcacacagcattacaaaaccctgaacaaagaatctatca-cactaagcctggatttctga-tgaaggaaatgtagacaaataagcgggtgctgttttaaaccactaagtttgtgg-taattggttatgtactaat-------------agaaaattaataAACAGATTCAATAGCTAAACATATGACAtgttctccactg---gaatgagtttatgaactgatatgcacagtagttgcataaaaccaaacgtttcctaacttgctttgcatttttcattttgtgatttttgtgtgatgcaatttttaac--acaatcgtatttcattcattcattc-aagacaattaacttagtgcctactatgtgccagatatgcttttatattctgcagacacaactttgatcaaaccaacccaaagcccttgtgct--t-atgccttccattctagaggCTTCTTGAgagtgagatggagccattggagggtattaagtgaagaaatgacacaatctgactcacattagcaggattgctgaccattgtg-ggggaaacagccatgggcagcaggagaggggacagagCTAGGGCCACAATTCAGTAGTGACAGGGTAGTGGAGACTAAGGGGAGAGGAGGGCCTGTGGGATGACAAGGACAGAGAGAAGGGCTGGAGAAGCAGGAGGTGAGGTAAAGGAACAGAGAGAAAGAATTCTAAACCGATGGAATTCTCAGAC-TTAAACACAGTG---------TTTTATAGATTTTTAATGTATTTATCCACAGAGCCTGGCACAGTGTTACTTACAGCTTGGTCTTTAATACATTCTATGCGGCTGTCTAAAAACGAATTGCCTCTGTAAGTT
i rheMac8.chr4                 N 0 C 0
s macFas5.chr4_KE145577_random   116748  991 +    231697 tcatg-----gggaaagaacactggtggccaataggaattagaaactctccccactgtctactctgatagcccg-aagg-aaacaggtaccttagtcccacaattgccagaaaccaaattctgccaacaagctccacataagcttgggggagaatcacaatcttaag-tgagcacacagcattacaaaaccctgaacaaagaatctatca-cactaggcctggatttctga-tgaaggaaatgtagacaaataagcgggtgctgttttaaaccactaagtttgtgg-taattggttatgtactaat-------------agaaaattaataAACAGATTCAATAGCTAAACATATGACAtgttctccactg---gaatgagtttatgaactgatatgcacagtagttgcataaaaccaaacgtttcctaacttgctttgcatttttcattttgtgatttttgtgtgatgcaatttttaaC--ACAATCGTATTTCattcattcattc-aagacaattaacttagtgcctactatgtgccagatatgcttttatattctgcagacacaactttgatcaaaccaacccaaagcccttgtgct--t-atgccttccattctagaggCTTCTTGAgagtgagatggagccattggagggtattaagtgaagaaatgacacaatctgactcacattagcaggattgctgaccattgtg-ggggaaacagccatgggcagcaggagaggggacagagCTAGGGCCACAATTCAGTAGTGACAGGGTAGTGGAGACTAAGGGGAGAGGAGGGCCTGTGGGATGACAAGGACAGAGAGAAGGGCTGGAGAAGCAGGAGGTGAGGTAAAGGAACAGAGAGAAAGAATTCTAAACCGATGGAATTCTCAGAC-TTAAACACAGTG---------TTTTATAGATTTTTAATGTATTTATCCACAGAGCCTGGCACAGTGTTACTTACAGCTTGGTCTTTAATACATTCTATGCGGCTGTCTAAAAACGAATTGCCTCCGTAAGTT
i macFas5.chr4_KE145577_random I 79595 C 0
s macNem1.NW_012012100v1          12788  985 +   1495729 tcatg-----gggaaagaacactggtggccaataggaattagaggcccttcctgctgtctaccctgatagcccg-aagg-aaacagggaccttagtcctacaatggccagaaaccgaattctgccaacgagctctatataagcttgggggagaatcccaatcttaag-tgagcacacagctttgcgaaaccctgaacaaagaatctctca-cactaggcctggatttctga-tgaaggaaatgtagacaaataaatgagtgctgttttaagccactaagtttgtgg-taattggttatgtactaat-------------agaaaattagt-aACAGATTCAACAGCTAAACATATGACAtgttctccactg---gaatgagtttatgaactgatatgcacaatagttgcataaagccaaacgtttcctaacttgctttgcatttttcattttgtgatttttgtgtgatgcaatttttaac--acaatcatatttcattcattc--------------agcttagttcctactatgtggcagatgtgcttttatattctgtagacacaactttgatcaaaacaacccaaagcccctgtgct--t-gtgccttccattctagaggCTTCTTGAgagtgagatggagccattggagggttttaagtgaagaaatgacacaatctgactcacattagcaggattgctgaccattgtg-gggggaacagctatgggcagcaggagaggggacagagctagggccacaattc-gtagttacagggtagtagagactaaggggagaggaggacctgagtgatgacagggacagagagaagggctggaGAAGCAGGAGGTGAGGTAAAGGAACAGAGAGAAAGAATTCTAAAGCAATAGAATTCTCAGAC-TTAAACACAGTGTTTTATAGATTTTATAGATTTTTAATCCATTTATCTGCAGAGCCTGGTACAGTGTTACTTGCACCTTGGTCTTTAATACATTCTGTGGGGCTGTCTAAAAACTAATTGCCTCCTTATGAT
i macNem1.NW_012012100v1       C 0 C 0
s manLeu1.NW_012101121v1         154954  983 +    273075 tcatg-----gggaaagaacactggtggccaataggaattagaaactctccccaccatctactctgatagcccg-aaag-aaacaggaaccttagtcctacaattgccagaaaccgaattctgccaacaagctgtacaaaagtttgggggagaatcacaatcttaagatgagggtacagctttgcgaaaccctgaacaaagaatatgtca-cactaggcctggatttctga-tgaaggaaatatagacaaataaataggtgctgttttaagccactaagtttgtgg-taattggttatgtactaat-------------agaaaattgataaacagattcaacagctaaacatatgacatgttctccactg---gaatgaatttatgaactgatatgcaaagtagtcgcatgaaaccaaatgttccctaacttgctttgcatttttcattttgtgatttttgtgtgatacaatttttaac--ataatcatatttcattcattca----acaaaaattaacttagtgcctactatgtggcagatatgcttttatattctgtagatacaactttgagcaaaacaacccaaagcccctgtgct--t-gtgcctcccattctagaggcttctttagagtgagatggagccattggagggttttaggtgaagaaatgacacaatctgactcacatcagcaggactgctgaccattgtg-gggagaatagTCATGGGCAGCAGGAGACAGGACAGAGCTAGGGCCACAATTCAGTAGTGAGAAGGTAGTAGATACTAAGGGGAGAGGAGGGCCTGAGGGATGACAGGGACAGAGAGAAGGGCTGGAAAAGCAGGAGGTGAGGTAAAGGAACAG------AGAATTCTAAAGCAGTGGAATTCTCAGAT-TTAAACATAGTG---------TTTTATAGATTTTTAATGCATTTATCCGCAGAACTTGGCACAGTGTTACTTGCACCTTGGTCTTTAATACATTCTGTGGGACTGTGTAAAAACTAATTAACTCCCTATGTT
i manLeu1.NW_012101121v1       C 0 C 0
s otoGar3.GL873550             16910731  909 -  18854210 tcctgc----agcaaagaatactggtggc--------------agcccttccccttctccacactgacagctgg-tattcaaacagggacttcagtcctacaactgccagaaagtaaattctgcccacaggctctgtgtaaacttaggagaggacgccaacctcaagatgagggcacaactttgtgaaaccctgaacagagaaccc-----caccatgcttggatttctga-ctaagaagcaggaaacaaataaatggcagctgtttaaagacaataaatttatgg-taatttagtatatagaaat-------------agaaaattaatacaCAAGCTCAATAGATAGGCACATAACATTTTCCCCCCTG---GAATGAATTTATGAGCTGATGTG-AAATTACTTGCATGAAATAAAATCTTTCCTTAACT-CTTAGTATGTTTTAGTTTGTGATTTTTAGGTGATTCAGTTTTC-AT--GCAATCATATCTCTTTTAGCCATTCAATAGTAGT----------CCTATTATGTATCAGGTATGCCTTTCTAAGCTG--GCTTCAATTTTGACTGAAACAGCCCAAAGCCTCTGTGCT--T--TGCCTTCC-----AGAGTCTTTACAAGAGTGAGATCAACCCACTGGAGCATTTTAACTGAAGAAATGACAGAATATGATTCTCAGTAGCAGGACTGGTGGCCACTATGAGGGAGAACAGTCGTGGGCAGCAGGTGAGGGGACAAGGCTAGTGCCACAGTTCTGGAGGGAGAG-GTGGTGG-GACTAAGGGGAGAAGAGG-CCTGGGGGATGACAAGGACAGAGGAAAGGGATGGAGAAGC---AGATGAGGAACAGGGTCAGAAGGAAAGAGC-----------------------------ATACAGTG---------TTTTATAGATTTTTAAT----------ACAGAGCCTAGCAGGGTGCTCTTTGC-TTTTGGTAATTAATACATT-TGTGGGGCTGCCTAACAGTTAATTGCTTCCTAATT--
i otoGar3.GL873550             I 2 C 0
s canFam3.chr12                  980652  967 +  72498081 -----ctcccggcaagcaatgctggtggccacaggagctaagaacagcatccca---------ctgacagcgtgccagg-aagtggagactgccgacctccaactacaagaactggaattctgctaacaga-tctgtacaagcttgtagggggacctcaagctctagttgcaaacactg-tctgtgacatgctgaggagaagacccctcagcatcactcctggactgctgacctacagaactgtgcacatacacatgggtgtggttgtaagtcactatgtttgtggttaatttgttatgcagcaat-------------agaaaaccaccacaTAGCCTCAAT------GCACATCACATTTTCCCAGTGGAATGAATGAATGTATGAATCGTCGTGCACACTAGTTGCATGAAATAAAAT-----CTCATTTTTCATGTATTTTCCATTTTGTGATTTTTAAGTGATGGGATTAAAATCTAATAGTCATATTTCattcattcattcaacaacaattaatttagtgcctactctgcaccaagaatggctttctacactaggggtacagctttcctcaaagtagcccaaagcacctgtgct--tcatgctttacattctagaggCTTCCTAAAagtgagatggagcccctggagcattttcagtgatgaaatgacacattctgactcacattagcaggatcactgaccccagtg-gagagagtggccctgggtggcaggtgttggggtggcagcaggg------tgcaatcaggagAGCG-GGTGGAGACTAAGGGGATGAGAAGGCATGAGGGCTGAGAGAGATGGAGAGAAGGGCTGCAGATGCAGGTG--GAGGGAGAGAAGCAGTGGTAAAGAATTCTAAAGTAGTGGAATTTGAATACATTGAATACATTG---------TTATATCAATTTTTTATTTAATCTCTATTAGGTCTTAGCAAGATATTGTTTGCATC-TAATATTTACTGCACTCTGTGGA-----CTGAATACCTGTGGCCTCCTTATGTT
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982  834 +    187130 I
e aotNan1.NW_018496904v1          97996   67 -    383796 I
e cebCap1.NW_016107755v1         358924  169 -   1771730 I
e calJac3.chr4                 30145138    0 + 171630274 C
e colAng1.NW_012115566v1        2822012  343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=-1398.000000
s hg38.chr6_GL000254v2_alt      1061640 4 +   4827813 AAAA---
s panTro5.chr6                 30027277 4 + 175400573 AAAA---
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30257932 4 + 173848474 AAAA---
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6060319 4 +   6154872 AAAA---
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30498026 3 + 172585720 -AAA---
i rheMac8.chr4                 C 0 I 1
s macNem1.NW_012012100v1          13773 3 +   1495729 -AAG---
i macNem1.NW_012012100v1       C 0 I 1
s manLeu1.NW_012101121v1         155937 3 +    273075 -AAA---
i manLeu1.NW_012101121v1       C 0 N 0
s otoGar3.GL873550             16911640 2 -  18854210 --AG---
i otoGar3.GL873550             C 0 I 2
s canFam3.chr12                  981619 4 +  72498081 ---ATCA
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138 0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macFas5.chr4_KE145577_random   117739 0 +    231697 C
e nomLeu3.chr1a                74736013 0 + 122973662 C

a score=11761.000000
s hg38.chr6_GL000254v2_alt      1061644 10 +   4827813 AGGTTAAAAA
s panTro5.chr6                 30027281 10 + 175400573 AGGTTAAAAA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30257936 10 + 173848474 AGGTTAAAAA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6060323 10 +   6154872 AGGTTAAAAA
i gorGor5.CYUI01015250v1       C 0 C 0
s otoGar3.GL873550             16911644 10 -  18854210 TGGTTAAAAA
i otoGar3.GL873550             I 2 C 0
s canFam3.chr12                  981623 10 +  72498081 GGGTTAAGAA
i canFam3.chr12                C 0 T 47547
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macNem1.NW_012012100v1          13776  1 +   1495729 I
e macFas5.chr4_KE145577_random   117739  0 +    231697 C
e rheMac8.chr4                 30498029  1 + 172585720 I
e nomLeu3.chr1a                74736013  0 + 122973662 C

a score=6434.000000
s hg38.chr6_GL000254v2_alt      1061654 10 +   4827813 Aggccgggcg
s panTro5.chr6                 30027291 10 + 175400573 Aggccgggca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30257946 10 + 173848474 Aggccgggcg
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6060333 10 +   6154872 Aggccgggcg
i gorGor5.CYUI01015250v1       C 0 C 0
s otoGar3.GL873550             16911654 10 -  18854210 ATACCAAGTG
i otoGar3.GL873550             C 0 I 33
e canFam3.chr12                  981633 47547 +  72498081 T
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macNem1.NW_012012100v1          13776  1 +   1495729 I
e macFas5.chr4_KE145577_random   117739  0 +    231697 C
e rheMac8.chr4                 30498029  1 + 172585720 I
e nomLeu3.chr1a                74736013  0 + 122973662 C

a score=156522.000000
s hg38.chr6_GL000254v2_alt      1061664 284 +   4827813 cggtggctcacgcctgtaatcccagcactttgggaggccgaggcgcgtggatcacaaggtcaggagatcgagaccatcctagctaacatggtgaaaccccgtctctaataaaaaattacaaaaaaattagccgggcgtggtggcggtcgcctgtagttccagctacttgggaggctgaggcaggagaacggcgtgaacccgggaggcggtgcttgcagtgagcgagattgcaccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaa
s panTro5.chr6                 30027301 284 + 175400573 cggtggctcacgcctgtaatcccagcactttgggaggccgaggcgcgtggatcacaaggtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaaattacaaaaaaattagccaggcgtggtggcggtggcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcggtgcttgcagtgagcgagattgcaccattgcactccagcctgggcaacagagcgagactccgtctcaaaaaaaaaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30257956 284 + 173848474 cggtggctcacgcctgtaatcccagcactttgggaggccgaggcgcgtggatcacaaggtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaaattacaaaaaaattagccaggcgtggtggcggtcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcggtgcttgcagtaagcgagattgcaccactgcactccagcctgggcaacagagcgagactccgtctacaaaaaaaaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6060343 284 +   6154872 cggtggctcacgcctgtaatcccagcactttgggaggccgaggcgtgtggatcacaaggtcaggagatcgagaccatcccggctaacatggtgaaaccccgtctctactaaaaaattacaaaaaaattagccgggcgtggtggcggtcacctgtagtcccagctacttgggaggctgaggcaggagaacggcgtgaacccgggaggtggtgcttgcagtgagcgagattgcaccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaa
i gorGor5.CYUI01015250v1       C 0 C 0
e canFam3.chr12                  981633 47547 +  72498081 T
e saiBol1.JH378364                23982 834 +    187130 I
e otoGar3.GL873550             16911664  33 -  18854210 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macNem1.NW_012012100v1          13776   1 +   1495729 I
e macFas5.chr4_KE145577_random   117739   0 +    231697 C
e rheMac8.chr4                 30498029   1 + 172585720 I
e nomLeu3.chr1a                74736013   0 + 122973662 C

a score=1680.000000
s hg38.chr6_GL000254v2_alt      1061948 4 +   4827813 aaaa-
s panTro5.chr6                 30027585 4 + 175400573 aaaa-
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30258240 4 + 173848474 aaaa-
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6060627 4 +   6154872 aaaa-
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74736013 4 + 122973662 AAAC-
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random   117739 4 +    231697 -AAAT
i macFas5.chr4_KE145577_random C 0 C 0
e canFam3.chr12                  981633 47547 +  72498081 T
e saiBol1.JH378364                23982 834 +    187130 I
e otoGar3.GL873550             16911664 33 -  18854210 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138 0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macNem1.NW_012012100v1          13776 1 +   1495729 I
e rheMac8.chr4                 30498029 1 + 172585720 I

a score=831761.000000
s hg38.chr6_GL000254v2_alt      1061952 394 +   4827813 a----ggttaaaaaagaaTACCAAATGTCTCAATAAAATATACACATAGCTTAGATGTGAATAATTCATAATAATAGGCAAGTGCATGggccggccattatagctcatgcctg-taataccagcattttgggaggctgaggcgggaggattgcttgagcccaggagttcaagaccagccagagcaatttagggagacctcatctctacaaatattatttttagaaaaattagccaggagtggtggcacaagcctgtggtgccagctacttgggaggctgagggaggagcattgatcacatgagccaaggaggtcgaggcttcagtgagtcatgagcgtgccactgcactttagccagggtaacagagtgacgccctgtctgtaaataaataaa-----aaataa
s panTro5.chr6                 30027589 397 + 175400573 aaaaaGGTTAAAAA-GAATACCAAATATCTCAATAAAATATACACATAGCTTAGATGTGAATAATTCATAATAATAGGCAAGTGCATGggccggccattatagctcatgcctg-taataccagcattttgggaggctgaggcgggaggattgcttgagcccaggagttcaagaccagccagagcaacgtagggagacctcatctctacaaatattatttttagaaaaattagccaggagtggtggcacaagcctgtggtaccagctacttgggaggctgagggaggagcattgatcacatgagccaaggaggtcgaggcttcagtgagtcatgagcgtgccactgcacttcagccagggtaacagagtgacaccctgtctgtaaataaataaa-----aaataa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30258244 391 + 173848474 C----GGTTAAAAA-GAATACCAAATGTCTCAATAAAATATACACATAGCTTAGATGTGAATAATTCATAATAATAGGCAAGTGCATGggccggccattatagctcatgcctg-taataccagcattttgggaggctgaggcgggaggattgcttgagcccaggagttcaagaccagccagagcaacgtagggagacctcatctctacaaatattatttttag-aaaattagccaggagtggtggcacaagcctgtggtgccagctacttgggaggctgagggaggagcattgatcacatgagccaaggaggtcgaggcttcagtgagtcatgagcgtgccactgcacttcagccagggtaacagagtgacgccctgtctgtaaataaataaa-----aaat-a
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6060631 394 +   6154872 a----ggttaaaaaagaaTACCAAATGTCTCGATAAAATATACACATAGCTTAGATGTGAATAATTCATAATAATAGGCAAGTGCATGggccggccattatagctcttgcctg-taataccagcattttgggaggctgaggcaggaggattgcttgagcccaggagttcaagaccagccagagaaatttagggagacctcatctctacaaatattatttttagaaaaattagccaggagtggtggcacaagcctgtggtaccagctacttgggaggctgagggaggagcattgatcacatgagccaaggaggtcgaggcttcagtgagtcatgagcgtgccactgcacttcagccagggtaacagagtgacgccctgtctgtaaataaataaa-----aaataa
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74736017 397 + 122973662 A----GGTTAGAAAAGAATACCAAGTGTCCCAATAAAATATGCACATAGCTTAGATGTGAATAATTCATAAATATAGGCAGGTGCATGAGATGGCCATTgtggctcatgcctg-taataccagcattttgggaggctgaggcaggaggatcacttgagctcaggagttcaagactagccagagcaacatggggagacctcatttctacaaatatt-tttttagaaaaattagccaggagtggtggtacaagcctgtggtgccagttactt-ggaggctgaaggaggagcattgatctcatgagcccaggaggtcgaggcttcggtgagtcatgagcgtgccactgcactccagccagggcagcagagtgatactctgtctaaaaataactaactaactaaataa
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30498030 381 + 172585720 ----AGGTTAAAAAAGAATACCAAGTGTCCCAATAAAATACGCACATAGCTTAGATATGAATAATTCATAAAAATAGGTAGGTGCATGggtcggccactgtggctcatgtctgccaataccagcattgtggcaggct-------gaggatcgcttgagcccaggagttcaagaccagccatagcaacatagggagacctcatccctacaaatatttcttttagaaaaattagccaggagtggtggcacaagcctgtggtgccagctacttgggaggctgagggaggagcattggtctcatgatcccaggaggtcgaggcttcagtgagtcatgagcgtgccgctgtactccagccagggcaacagagtgacaccctgcctagaaata------------aacaa
i rheMac8.chr4                 I 1 C 0
s macFas5.chr4_KE145577_random   117743 381 +    231697 ----AGGTTAAAAAAGAATACCAAGTGTCCCAATAAAATACGCACATAGCTTAGATATGAATAATTCATAAAAATAGGTAGGTGCATGggtcggccactgtggctcatgtctgccaataccagcattgtggcaggct-------gaggatcgcttgagcccaggagttcaagaccagccatagcaacatagggagacctcatccctacaaatatttcttttagaaaaattagccaggagtggtggcacaagcctgtggtgccagctacttgggaggctgatggaggagcattggtctcatgatcccaggaggtcgaggcttcagtgagtcatgagcgtgccgctgtactccagccagggcaacagagtgacaccctgcctagaaata------------aacaa
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          13777 393 +   1495729 ----AGGTTAGAAAAGAATACCAAGTGTCCCAATAAAATATGCACATAGCTTAGATGTGAATAATTCATAAACATAGGCAGGTGCATGGGTCAGCCATTgtggctcatgcctg-taataccagcattttggaaggctgaggcgggaggatcacttgagctcaggacttcaagactagccagagcaacatacagagacctcatttctacacatattt-ttaaagaaatattagccagggttggtggcacaagcctgtggtgccagctacttggtaggctgaaggaggagcattgatagtgtgagcccaggaggtcaagacttcagtgagtcatgagcatggcactgcactccagccagggcaacagagtgatactcggtctaaaaCTAACTAAC-----TAACTA
i macNem1.NW_012012100v1       I 1 C 0
e canFam3.chr12                  981633 47547 +  72498081 T
e saiBol1.JH378364                23982 834 +    187130 I
e otoGar3.GL873550             16911664  33 -  18854210 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=637589.000000
s hg38.chr6_GL000254v2_alt      1062346 253 +   4827813 aaaaaTTAATA-ATAAAGGGAGTGCATGAGCACTGGCGAAGGGCACTTTGGCTGCATTAAGCACTTGCAATTCTGAGGTAATTAAATTCTGTACAGGCTCCTGGTTGCAATATACGGTAATACATTG---TGCTTTGTATT--GAGATGTCCTGGACTCGCACACACAAACTCAGAGCTATGAAATAAAGATACTGTAAAAATACAACAGACCAGAGTCACAGATACACAGTCTGGGAAAGTAAAACT---TCACTTTGTGA
s panTro5.chr6                 30027986 253 + 175400573 aaaaaTTAATA-ATAAAGGGAGTGCATGAGCACTGGCGAAGGGCACTTTGGCTGCATTAAGCACTTGCAATTCTGAGGTAATTAAATTCTGTACAGGCTCCTGGTTGCAATATACGGTAATACATTG---TGCTTTGTATT--GAGATGTCCTGGACTCGCACACACAAACTCAGAGCTATGAAATAAAGATACTGTAAAAATACAACAGACCAGAGTCACAGATACACAGTCTGGGAAAGTAAAACT---TAACTTTGTGA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30258635 253 + 173848474 aaaaaTTAATA-ATAAAGGGAGTGCATGAGCACTGGCGAAGGGCACTTTGGCTGCATTAAGCACTTGCAATTCTGAGGTAATTAAATTCTGTACAGGCTCCTGGTTGCAATATACGGTAATACATTG---TGCTTTGTATT--GAGATGTCCTGGACTCGCACACACAAACTCAGAGCTATGAAATAAAGATACTGTAAAAATACAACAGACCAGAGTCACAGATACACAGTCTGGGAAAGTAAAACT---TAACTTTGTGA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6061025 251 +   6154872 aaaaaTTAATA-ATAAAGGGAGTGCATGAGCACTGGCGAAGGGCACTTTGGCTGCATTAAGCACTTGCAATTCTGAGGTAATTAAATTCTGTACAGGCTCCTGGTTGCAATATACGGTAATACATTG---TGCTTCATATT--GAGATGTCCTGGACTCGCACACACAAACTCAGAGCTATGAAATAAAGATACTGTAAAAATACAACAGACCAGAGTCACAGAT--ACAGTCTGGGAAAGTAAAACT---TCACTTTGTGA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74736414 253 + 122973662 ataaataaaaa-ataaaGGCGGTGCGTGAGCACTGGTGAGGGGCACTTTGGCTGCATGGAGCACTTGCAGATTTGAGGTGATTAAATTCTGTCCAGGCTCCTGGCTGCAATATACAGTAACACATTG---TGCTTTGTCTT--GAGATGTCCTGGACTCACGCACACAAACTCAGGGCTATAAGATAAAGATAATTTTAAAATACAACAGACCAGAGTCACAGATACACAGTCTGGGAAAGTAAAACT---TAACTTTGTGA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30498411 251 + 172585720 acaaacaaacaaacaaaGGCAGTTCATGAGCACTGGTGAAGGGCACTTTGGCTGCATTGAGCACTTGGAATTTTGAGGTGATTAAATTCTGTCCAGGCTCCTGGTTGCAATATACGGTAACAC---G---TCCTTTGTATT--GAGATGTCCTGGACTCACACACACAAAGTCAAGACTATGAAATAAGGATAATTTAAAAATACAGCACACCAGAGTCACAGATACATAGTCTGGGAAAGTAAAACT---TAGCTTTGTGA
i rheMac8.chr4                 C 0 N 0
s macFas5.chr4_KE145577_random   118124 251 +    231697 acaaacaaacaaacaaaGGCAGTTCATGAGCACTGGTGAAGGGCACTTTGGCTGCATTGAGCACTTGCAATTTTGAGGTGATTAAATTCTGTCCAGGCTCCTGGTTGCAATATACGGTAACAC---G---TCCTTTGTATT--GAGATGTCCTGGACTCACACACACAAATTCAAGACTATGAAATAAGGATAATTTAAAAATACAGCACACCAGAGTCACAGATACATAGTCTGGGAAAGTAAAACT---TAGCTTTGTGA
i macFas5.chr4_KE145577_random C 0 T 75587
s macNem1.NW_012012100v1          14170 254 +   1495729 ACTAGTAAATACATAAAGGCGGTGTATGAGCACTGGTGAAGGGCACTTTGGCTGCATTGAGCACTTGGAATTTTGAGGTGATTAAATTCTGTCCAGACTCCCGGTTGCAATATATGGTAACACATTG---TGCTTTGTGTT--GAGATGTCCTGGACTTGCACACACAAACTCAGGGTTATGAAATAAAGATAATTTAAAAATACAATAGACCAGAGTCACAGATACACAATCTGGGAAAGTAAAACT---TAACTTTGTGA
i macNem1.NW_012012100v1       C 0 C 0
s otoGar3.GL873550             16911697 257 -  18854210 AATAATTCATAAAAACAGGCAGTGCAT--GCGCTGGAGAAGGGCATTTTAACTGT-TAGAGCAAGTGCAGGTTTGAAGTGATTAAAGTCC-TACA-ACTCCTGGCTGAAAGACACAGTAACAAATTGGGATTATTTGTATGAAGAGATGTCCTGCACTCACAAGTACAAACTAAGGGCTATGGAATAAAGACAATTTTAAAATTTAACAACTCAGAGTCCAAGATACATAGTCCAGGAAAGTAAAACTTGGTAGTTTTGTGA
i otoGar3.GL873550             I 33 C 0
e canFam3.chr12                  981633 47547 +  72498081 T
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=254282.000000
s hg38.chr6_GL000254v2_alt      1062599  99 +   4827813 GTCTAATTGCAATGCGTTTAG----ACATATTTATATATAATGGGGCCAAAAATCATCTCTTTTACAAATTAGATTCGTGACCATTCAGGGGCTAC-CAAGATT
s panTro5.chr6                 30028239  99 + 175400573 GTCTAATTGCAATGGGTTTAG----ACATATTTATATATAATGGGGCCAAAAATCACCTCTTTTACAAATTAGATTCGTGACCATTCAGGGGCTAC-CAAGATT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30258888  99 + 173848474 GTCTAATTGCAATGGGTTTAG----ACATATTTATATATAATGGGGCCAAAAATCACCTCTTTTACAAATTAGATTCGTGACCATTCAGGGGCTAC-CAAGATT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6061276  99 +   6154872 GTCTAATTGCAATGCGTTTAG----ACATATTTATATATAATGGGGCCAAAAATCACCTCTTTTACAAATTAGATTCGTGACCATTCAGGGGCTAC-CAAGATT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74736667  99 + 122973662 GTCTAACTGCAATGCGTTTAG----AAACATTTATATATAATGGGACCAAAAATCACCTCTTTTACAAATTAGATTCGTGATCATTCAGGGGTTAC-CAAGATT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30629858  99 + 172585720 GTCTAATTGCAATGCATATAG----ACACATTTATATGTAAAGGGCCCCCAAATCACCTCTTTTACAAATTAGATTCGTGATCATTCAGGGGTTAC-CAAGATT
i rheMac8.chr4                 N 0 N 0
s macFas5.chr4_KE145577_random    42788 103 +    231697 GTCTAATTGCAATGCATTTAGACACACACATTTATATATAAAGGTGCCAAAAATCACCTCTTCTACAAATCAGATTCGTGATCATTCAGGGGTTAG-CAAGATG
i macFas5.chr4_KE145577_random T 75587 I 75484
s macNem1.NW_012012100v1          14424 100 +   1495729 GTCTAATTGCAATGCATTTAG----ATACATTTATATATAATGGGGCCAAAAATCACCTCTTTTACAAATTAGATTCATGATCATTCAGTAGTTAACCAAGATT
i macNem1.NW_012012100v1       C 0 C 0
s otoGar3.GL873550             16911954  98 -  18854210 GTCTAATTGTAATGAGTTTAG----ACACATTGCTCTATCGAGGGGCC-AACATAACTTCTGTTACAGATTAGATGCCTGATCCTTCAGGGATTCC-CCAAATT
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  981633 47547 +  72498081 T
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=44908.000000
s hg38.chr6_GL000254v2_alt      1062698 15 +   4827813 GTGCTACCCACTGTA
s panTro5.chr6                 30028338 15 + 175400573 GTGCTACCCACTGTA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30258987 15 + 173848474 GTGCTACCCACTGTA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6061375 15 +   6154872 GTGCTACCCACTGTA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74736766 15 + 122973662 GCGCTACCCACTGTA
i nomLeu3.chr1a                C 0 I 37
s rheMac8.chr4                 30498662 15 + 172585720 GTGCTACCCACTGTA
i rheMac8.chr4                 N 0 C 0
s macFas5.chr4_KE145577_random   118375 15 +    231697 GTGCTACCCACTGTA
i macFas5.chr4_KE145577_random I 75484 C 0
s macNem1.NW_012012100v1          14524 15 +   1495729 GTGCTACCCGCTGTA
i macNem1.NW_012012100v1       C 0 C 0
s otoGar3.GL873550             16912052 15 -  18854210 GTACTACCTACTCTG
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  981633 47547 +  72498081 T
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=2800.000000
s hg38.chr6_GL000254v2_alt      1062713 1 +   4827813 G
s panTro5.chr6                 30028353 1 + 175400573 G
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30259002 1 + 173848474 G
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6061390 1 +   6154872 G
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30498677 1 + 172585720 G
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   118390 1 +    231697 G
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          14539 1 +   1495729 G
i macNem1.NW_012012100v1       C 0 C 0
s otoGar3.GL873550             16912067 1 -  18854210 G
i otoGar3.GL873550             C 0 I 1501
e canFam3.chr12                  981633 47547 +  72498081 T
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138 0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e nomLeu3.chr1a                74736781 37 + 122973662 I

a score=9933.000000
s hg38.chr6_GL000254v2_alt      1062714 5 +   4827813 CACAA
s panTro5.chr6                 30028354 5 + 175400573 CACAA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30259003 5 + 173848474 CACAA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6061391 5 +   6154872 CACAA
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30498678 5 + 172585720 CACAA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   118391 5 +    231697 CACAA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          14540 5 +   1495729 CACAA
i macNem1.NW_012012100v1       C 0 C 0
e canFam3.chr12                  981633 47547 +  72498081 T
e saiBol1.JH378364                23982 834 +    187130 I
e otoGar3.GL873550             16912068 1501 -  18854210 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138 0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e nomLeu3.chr1a                74736781 37 + 122973662 I

a score=37669.000000
s hg38.chr6_GL000254v2_alt      1062719 19 +   4827813 TCGGAGACCCACGCCGAGG
s panTro5.chr6                 30028359 19 + 175400573 TCGGAGACCCACCCCGAGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30259008 19 + 173848474 TCGGAGACCCATCCCGAGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6061396 19 +   6154872 TCGGAGACCCACCCCGAGG
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30498683 19 + 172585720 TCGGAGACCCACCCCGAGG
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   118396 19 +    231697 TCGGAGACCCACCCCGAGG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          14545 18 +   1495729 TCGGAGAGGCA-CCCGAGG
i macNem1.NW_012012100v1       C 0 C 0
s otoGar3.GL873550             16913569 19 -  18854210 TCCGAGAGTCACCGCGAGG
i otoGar3.GL873550             I 1501 C 0
e canFam3.chr12                  981633 47547 +  72498081 T
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e nomLeu3.chr1a                74736781 37 + 122973662 I

a score=194776.000000
s hg38.chr6_GL000254v2_alt      1062738 87 +   4827813 CTGC---GGGACTCGTGGAGACCCTCGAC---ACAAGAACCCCAGGTGCCTATACCCGATTCCATTTTCAGTTCAGGCCCAAATCCCCGGGGG
s panTro5.chr6                 30028378 87 + 175400573 CTGC---GGGACTCGTGGAGACCCTCGAC---ACAAGAACCCCAGGTGCCTATACCCGATTCCATTTTCAGTTCAGGCCCAAATCCCCGGGGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30259027 87 + 173848474 CTGC---GGGACTCGTGGAGACCCTCGAC---ACAAGAACCCCAGGTGCCTATACCCGATTCCATTTTCGGTTCAGGCCCAAATCCCCGGGGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6061415 87 +   6154872 CTGC---GGGACTCGTGGAGACCCTCGAC---ACAAGAACCCCAGGTGCCTATACCCGATTCCATTTTCAGTTCAGGCCCAAATCCCCGGGGG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74736818 88 + 122973662 CTGT---GGGACCAGCGGAGATCCTCCACCCGATAAAAGCCCCAGGTGCCTATACC--ATTCCATTTTCTGTTCAGGCCCAAATCCCAGGGGG
i nomLeu3.chr1a                I 37 C 0
s rheMac8.chr4                 30498702 89 + 172585720 CTGC----AGACCCGAGGAGACCCTTGACCCGACAAGAGCCCCAGGCGCCTATACCAGATTCCATTTTCAGTTCAGGCCCAAATCCCCAGGGG
i rheMac8.chr4                 C 0 T 61400
s macFas5.chr4_KE145577_random   118415 89 +    231697 CTGC----AGACCCGAGGAGACCCTTGACCCGACAAGAGCCCCAGGCGCCTATACCAGATTCCACTTTCAGTTCAGGCCCAAATCCCCAGGGG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          14563 93 +   1495729 CTGCTGCGAGACCAGCGGAGGTCCTCGACCCCACAAGAGCCCCAGGCGCCTATACCGGATTCCATTTTCAGTTCAGGCCCAAATCCCCGGGGG
i macNem1.NW_012012100v1       C 0 C 0
s otoGar3.GL873550             16913588 78 -  18854210 CTGC---GGGACCC-CAGAGACCTTCGACT--GCAAAGGCCTCCTGGGACCTTCACTGGTTTCGTCTTCAGTTC---------CCCGCGGCGG
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  981633 47547 +  72498081 T
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=75598.000000
s hg38.chr6_GL000254v2_alt      1062825 48 +   4827813 -----ATTGATCGGGGCAGAGGAGGAGCTCAGTGGCTGAGGCT--------------GACCGCGGGC
s panTro5.chr6                 30028465 62 + 175400573 -----ATTGGTCGGggcagaggaggagctcagtggctgaggctcagtggctgaggctgaCCGTGGGC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30259114 62 + 173848474 -----ATTGGTCGGggcagaggaggagctcagtggctgaggctcagtggctgaggctgaCCGTGGGC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6061502 62 +   6154872 -----ATTGGTCGGggcagaggaggagctcagtggctgaggctcagtggctgaggctgaCCGCGGGC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74736906 47 + 122973662 ------TTGGTCGAGGCTGAGGCGGGGCTCAGCGGCCTGGGCT--------------GACCACGGTC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30437391 48 + 172585720 -----ATTGGTAGGGAGGGAGGCTGGGCTCAGTGGCCTGGGCT--------------GACCGCGGAC
i rheMac8.chr4                 T 61400 C 0
s macFas5.chr4_KE145577_random   118504 47 +    231697 ------TTAGTCGGCTTAGAGGCGGGGCTCAGCGGCCTGGACT--------------GTCAGCGACC
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          14656 47 +   1495729 ------TTGGTCGAGGCGGAGGCGGGGCTCAGTGGCCTGGGCT--------------GACTGCGGTC
i macNem1.NW_012012100v1       C 0 C 0
s otoGar3.GL873550             16913666 52 -  18854210 GTCCCTTCCCTGGGAACTGAAGTGGGACT-GGTGAGCGAAGCT--------------GACCGCGGGG
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  981633 47547 +  72498081 T
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=49934.000000
s hg38.chr6_GL000254v2_alt      1062873 20 +   4827813 TTGGGGACAGGGTCTCCCA-C
s panTro5.chr6                 30028527 20 + 175400573 TTGGGGACAGGGTCTCCCA-C
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30259176 20 + 173848474 TTGGGGACAGGGTCTCCCA-C
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6061564 20 +   6154872 TTGGGGACAGGGTCTCCCA-C
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74736953 21 + 122973662 GCTGGGAATGGGTCTCACACC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30437439 20 + 172585720 GTGGGGACACGGTCTCACA-C
i rheMac8.chr4                 C 0 I 61400
s macFas5.chr4_KE145577_random   118551 20 +    231697 ACGAGGACAGGGTCTCACA-C
i macFas5.chr4_KE145577_random C 0 I 1
s macNem1.NW_012012100v1          14703 20 +   1495729 ACTGGGAATGGGTCTCACA-C
i macNem1.NW_012012100v1       C 0 I 1
s otoGar3.GL873550             16913718 20 -  18854210 ATGGGGCCAGGGTCTCATA-C
i otoGar3.GL873550             C 0 I 1
s canFam3.chr12                  934086 20 +  72498081 GGGGGGCCAGGGTCTCACA-C
i canFam3.chr12                T 47547 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=435269.000000
s hg38.chr6_GL000254v2_alt      1062893 149 +   4827813 -CTCCAGTGGATACACAGCTGCGACCTGGACCCGGACCGGAGCCTCTTCGCGCGGGGATGAACA-TAC-CCTACGATGGCGCCAGTTACCTCGTCCTAAACCAGGAACTGCTCTCTTGGACCGCAGCGGAAAAGGCGGCTCAGATGTTCTGG
s panTro5.chr6                 30028547 149 + 175400573 -CTCCAGTGGATACACAGCTGCGACCTGGACCCGGACCGGAGCCTCTTCGCGCGGGGATGAACA-TAC-CCTACGATGGCGCCAGTTACCTCGTCCTAAACCAGGAACTGCGCTCTTGGACCGCAGCGGACAAGGCGGCTCAGATGTTTTGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30259196 149 + 173848474 -CTCCAGTGGATACACAGCTGCGACCTGGACCCGGACCGGAGCCTCTTCGCGCGGGGATGAACA-TAC-CCTACGATGGCGCCAGTTACCTCGTCCTAAACCAGGAACTGCGCTCTTGGACCGCAGCGGACAAGGCGGCTCAGATGTTTTGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6061584 149 +   6154872 -CTCCAGTGGATACACAGCTGCGACCTGGACCCGGACCGGAGCTTCTTCGCGCGGGGATGAACA-TAC-CCTACGATGGCGCCAGTTACCTCGTCCTAAACCAGGAACTGCGCTCTTGGACCGCAGCGGACAAGGCGGCTCAGATGTTTTGG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74736974 147 + 122973662 -CTCCAATGGGTACACAGCTGCGACCTGGACTCGGACTGCAGCCTCCTCA-GTGGGTATGAACA-TAC-CCTATGACGGCGCCAGTTACCTCGTCCTAAACCAGGAACTGCGCTCTTGGACTGCAGCGGACAAGGAGGCTCAGATG-CCTGG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30498859 148 + 172585720 -CTCCATTGTGTACACAGCTGCGACCTGGACCCGGACTGGAGCCTCCT-GCGCGGGTATGAACA-TAT-CCTATGACGGCGCCAGTTACCTCGTGCTAAACCAGTAGCTGCGCTCTTGGACCGCAGCGGACAGGGCGGCTCAGATGCCCTGG
i rheMac8.chr4                 I 61400 C 0
s macFas5.chr4_KE145577_random   118572 148 +    231697 -CTCCATTGTGTACACAGCTGCGACCTGGACCCGGACTGGAGCCTCCT-GCGCGGGTATGAACA-TAT-CCTATGACGGCGCCAGTTACCTCGTCCTAAACCAGTAGCTGCGCTCTTGGACCGCAGCGGACAGGGCGGCTCAGATGCCCTGG
i macFas5.chr4_KE145577_random I 1 C 0
s macNem1.NW_012012100v1          14724 148 +   1495729 -CTCCATTGTATACACAGCTGCGACCTGGACCCGGACTGGAGCCTCCT-CCGCGGGGATGAACA-CAC-CCTACGAAGGCGCCAGTTACCTCATCATAAACCAGGAACTGTGCTCTTGGACAGCGCGGGACAAGGCGGCTCAGATGCTCTGG
i macNem1.NW_012012100v1       I 1 C 0
s otoGar3.GL873550             16913739 150 -  18854210 -TTCCAGAGCGTGATCGGCTGCGACGTGGGGCCGGACGGGCGTCTCCT-CCGCGGGTATCAGCAGCACGCCTACGATGGCGCCGAATACATCTCTCTGAACGAGGACCTGCGGTCCTGGACCGCGGCGGACACTGCAGCTCAGATCACCCAG
i otoGar3.GL873550             I 1 C 0
s canFam3.chr12                  934106 151 +  72498081 CTTCCAGTGGATGTTTGGCTGTGACCTGGGGCCCGGCGGGCGCCTCCT-CCGCGGGTACAGTCAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACGCGGCGGCGCTGATCACCCGG
i canFam3.chr12                C 0 I 22
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996  67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138   0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=17923.000000
s hg38.chr6_GL000254v2_alt      1063042  9 +   4827813 AG-----GAGGAAC
s panTro5.chr6                 30028696  9 + 175400573 AG-----GAGGAAC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30259345  9 + 173848474 AG-----GAGGAAC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6061733  9 +   6154872 AG-----GAGGAAC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74737121  9 + 122973662 CG-----GAGGAAC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30499007  9 + 172585720 CG-----GAGGAAC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   118720  9 +    231697 CG-----GAGGAAC
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          14872  9 +   1495729 CG-----GAGAAAC
i macNem1.NW_012012100v1       C 0 C 0
s otoGar3.GL873550             16913889 14 -  18854210 CGCAAGTGGGAGGC
i otoGar3.GL873550             C 0 C 0
e canFam3.chr12                  934257 22 +  72498081 I
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138  0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=5358.000000
s hg38.chr6_GL000254v2_alt      1063051 2 +   4827813 AT
s panTro5.chr6                 30028705 2 + 175400573 AT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30259354 2 + 173848474 AT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6061742 2 +   6154872 AT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74737130 2 + 122973662 AT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30499016 2 + 172585720 AT
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   118729 2 +    231697 AT
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          14881 2 +   1495729 AC
i macNem1.NW_012012100v1       C 0 C 0
s otoGar3.GL873550             16913903 2 -  18854210 AG
i otoGar3.GL873550             C 0 I 8
s canFam3.chr12                  934279 2 +  72498081 AT
i canFam3.chr12                I 22 C 0
e saiBol1.JH378364                23982 834 +    187130 I
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138 0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=32930.000000
s hg38.chr6_GL000254v2_alt      1063053 7 +   4827813 GCAGAGC
s panTro5.chr6                 30028707 7 + 175400573 GCAGAGC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30259356 7 + 173848474 GCAGAGC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6061744 7 +   6154872 GCAGAGC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74737132 7 + 122973662 GCAGAGC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30499018 7 + 172585720 GCAGAGC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   118731 7 +    231697 GCAGAGC
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          14883 7 +   1495729 GCAGAGC
i macNem1.NW_012012100v1       C 0 C 0
s saiBol1.JH378364                24816 7 +    187130 GCGGAGC
i saiBol1.JH378364             I 834 C 0
s otoGar3.GL873550             16913913 7 -  18854210 GCAGAGA
i otoGar3.GL873550             I 8 C 0
s canFam3.chr12                  934281 7 +  72498081 GCAGGGC
i canFam3.chr12                C 0 C 0
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e calJac3.chr4                 30145138 0 + 171630274 C
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=176846.000000
s hg38.chr6_GL000254v2_alt      1063060 54 +   4827813 TGCTCAAAACCTACCTGCCGGGAAGGTGGGCGGAGTGGCTCAGCAAAGGCCTTA
s panTro5.chr6                 30028714 54 + 175400573 TGCTCAAAACCTACCTGCCCGGAAGGTGGGCGGAGTGGCTCAGCAAAGGCCTTA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30259363 54 + 173848474 TGCTCAAAACCTACCTGCCCGGAAGGTGGGCGGAGTGGCTCAGCAAAGGCCTTA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6061751 54 +   6154872 TGCTCAAAACCTACCTGCCCGGAAGGTGGGCGGAGTGGCTCAGCAAAGCCCTTA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74737139 54 + 122973662 TGCTCAAAACCTACCTGCAGGGAAGGTGGGCGGAGTGGCTCTGCAAAGTCCTTA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30499025 53 + 172585720 TGGTCAAAACCTACCTGCAGGGAAGATGGGCGGAGTAGCTCAGC-AAGGCCTTA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   118738 53 +    231697 TGGTCAAAACCTACCTGCAGGGAAGATGGGCGGAGTAGCTCAGC-AAGGCCTTA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          14890 54 +   1495729 TGCTCAAAACCTACCTGCAGGGAAGGTGGGCAGAACGGCTCAGCAAAGGCCTTA
i macNem1.NW_012012100v1       C 0 C 0
s calJac3.chr4                 30145138 54 + 171630274 GGCTCAGGGCCTACCTGGAGGGCACATGCCTGAAGTGGCTCCGCAGATACCTGG
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                24823 54 +    187130 AACAGAGAGCCTACCTGGAGGGCGAGTGCCTGGAGTGGCTCCGCAAATACCTGG
i saiBol1.JH378364             C 0 C 0
s otoGar3.GL873550             16913920 54 -  18854210 GACGGAGGGCCTACCTAGAAGGCGTGTGCATGGAGTGGCTCCGTAGACACCTAG
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  934288 54 +  72498081 ACCTGAGGAACTACCTGGAGACGACGTGCGTGGAGTGGCTGCGGAGGTACCTGG
i canFam3.chr12                C 0 C 0
e aotNan1.NW_018496904v1          97996 67 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=213063.000000
s hg38.chr6_GL000254v2_alt      1063114 41 +   4827813 AGAATGAGAAGGAGAGGCTGCAATGCGCAGGTACCAGAGGC
s panTro5.chr6                 30028768 41 + 175400573 AGAATGAGAAGGAGAGGCTGCAATGCGCAGGTACCAGAGGC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30259417 41 + 173848474 AGAATGAGAAGGAGAGGCTGCAATGCGCAGGTACCAGAGGC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6061805 41 +   6154872 AGAATGAGACGGAGAGGCTGCAATGCGCAGGTACCAGAGGC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74737193 41 + 122973662 AGAATGGGAAGGAGACGCTGCAGTGCCCAGGTACCAGCGCC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30499078 41 + 172585720 AGAATGGGAAGGAGACGCTGCAGTGTGCAGGTACCAGCGGC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   118791 41 +    231697 AGAATGGGAAGGAGACGCTGCAGTGTGCAGGTACCAGCGGC
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          14944 41 +   1495729 AGAATGGGAAGGAGACGCCGCAGTGCGCGGGTACCAGCGGC
i macNem1.NW_012012100v1       C 0 C 0
s calJac3.chr4                 30145192 39 + 171630274 CCAAGGGGAAGGAGA--CTGCAGCATACGGGTACTAGGGAC
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                24877 41 +    187130 AGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGAC
i saiBol1.JH378364             C 0 C 0
s aotNan1.NW_018496904v1          98063 41 -    383796 AGAATGGGAAGGAGACGCTGCAGCGCGCAGGTACCAGGGGC
i aotNan1.NW_018496904v1       I 67 I 50
s otoGar3.GL873550             16913974 41 -  18854210 AGAAGGGGAAGGACACGCTGCAGCGCGCGGGTACTAGGGGC
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  934342 40 +  72498081 AGATGGGGAAGGAGACGCTGCTGCGCGCAGGTACCGGGGC-
i canFam3.chr12                C 0 C 0
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=129853.000000
s hg38.chr6_GL000254v2_alt      1063155 50 +   4827813 CACGGGTCGCCTCCCTGATCTC-------CTGCAGATATCCCTGAGCCACCTTCCAA
s panTro5.chr6                 30028809 50 + 175400573 CACGGGGCGCCTCCCTGATCTC-------CTGCAGATATCCCTGAGCCACCTTCCAA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30259458 50 + 173848474 CACGGGGCGCCTCCCTGATCTC-------CTGCAGATATCCCTGAGCCACCTTCCAA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6061846 50 +   6154872 CACGGGGCGCCTCCCTGATCTC-------CTGCAGATATCCCTGAGCCACCTTCCAA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74737234 50 + 122973662 CACGGGGTGCCTCCCTGATCTC-------CTGCAGATCTCCTCGAGTCACATTCCAA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30499119 50 + 172585720 CAAGGGGGGCCTCCCAGATCTC-------CTGAAGATTTCCCCTACCCACCTTCTAA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   118832 50 +    231697 CAAGGGGGGCCTCCCAGATCTC-------CTGAAGATTTCCCCTACCCACCTTCTAA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          14985 50 +   1495729 CGCGGGGCGCCTCCCTGATCTC-------CTGCAGATCTGCCCGACCCACCTTCTAA
i macNem1.NW_012012100v1       C 0 C 0
s calJac3.chr4                 30145231 50 + 171630274 AGTGGGGAGCCGTCCCCATCTC-------CCGTAGATCTCCCAGGATGGCCTCCCAT
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                24918 50 +    187130 CAGGGGGAACCTCCCTGATAGC-------CTATGGACCTCCCAGGATGGTCTTGCAG
i saiBol1.JH378364             C 0 C 0
s otoGar3.GL873550             16914015 45 -  18854210 -GTGGGGCGTCTCCCACAT----------CTGTAAATATCTCC-ACTCTCCGTCCGC
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  934382 46 +  72498081 CCCGGG---CCTCCCCGATCTCGCCTCCACTAGGGA-------GGGCTTCCCACCA-
i canFam3.chr12                C 0 C 0
e aotNan1.NW_018496904v1          98104 50 -    383796 I
e cebCap1.NW_016107755v1         358924 169 -   1771730 I
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=573855.000000
s hg38.chr6_GL000254v2_alt      1063205 130 +   4827813 AAGAAGGGGAGGAAAATGGGACCAACGCTAAAATAT-CCCTC------------------TCCCTCTTGTCCTGAGGCAGAAGAGTCCTCCTGGGTTTCTAAA-TCCTATACCAGAGAGTGA--CTGAGGGCCCGCCCTGCACTCTGGGACA
s panTro5.chr6                 30028859 130 + 175400573 AAGAAGGGGAGGAAAATGGGACCAACGCTAAAATAT-CCCTC------------------TCCCTCTTGTCCTGAGGCAGAAGAGTCCTCCTGGGTTTATAAA-TCCTATACCAGAGAGTGA--CTGAGGGCCCGCCCTGCGCTCTGGGACA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30259508 130 + 173848474 AAGAAGGGGAGGAAAATGGGACCAACGCTAAAATAT-CCCTC------------------TCCCTCCTGTCCTGAGACAGAAGAGTCCTCCTGGGTTTATAAA-TCCTATACCAGAGAGTGA--CTGAGGGCCTGCCCTGCACTCTGGGACA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6061896 130 +   6154872 AAGAAGGGGAGGAAAATGGGACCAACGCTAAAATAT-CCCTC------------------TCCCTCTTGTCCTGAGGCAGAAGAGTCCTCCTGGGTTTCTAAA-TCCTATACCAGAGAGTGA--CTGAGGGCCCGCCCTGCACTCTGGGACA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74737284 130 + 122973662 AAGAAGAGAAGGAAAATGGGACCAACGCTAAAACAT-CCCTC------------------TCCCTCTTGTCCTGAGGAGGAAGAGTGCTCCTGGGTATTCAGA-TCCTATACCAGAGAGTGA--CTGAGGGCCCGCCCTGCACTCTGGGACA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30499169 126 + 172585720 AAGGAG---ATTAAAATGGGACCAACACTAAAACAT-CCCTC------------------TCCCTCTAATCCTGAGGAAGAAGAGTCCTCCTGGGTTT-CACA-TCCTACACCAGAGAGTGA--CTGCGGACTCGCCCTGCGCTCTGGGACA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   118882 126 +    231697 AAGGAG---ATTAAAATGGGACCAACACTAAAACAT-CCCTC------------------TCCCTCTAATCCTGAGGAAGAAGAGTCCTCCTGGGTTT-CACA-TCCTACACCAGAGAGTGA--CTGAGGGCTCGCCCTGCACTCTGGGACA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          15035 130 +   1495729 AAGAAGGGAAGGAAAATGGGACCAACGTTAAAACAT-TCCTC------------------TTCCTCTTGTCCTGAGGAGGAAAAGTCCTCGTGGGTTTCCATA-TCCCATACCAGAGAGTGA--CTGCGGGCCCGCCCTGCACTCTGGGACA
i macNem1.NW_012012100v1       C 0 C 0
s calJac3.chr4                 30145281 109 + 171630274 GGGGAGGGGAGGAAAATGGGATCAGTGCTAGAATAT-CGCCC------------------TCCCTTGAATGGAGAATGGCATGAGTTTTCCTGAGTTTCC-----------------------TCTCAGGGCCC-CTCCGCTCTCTAGGATA
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                24968 149 +    187130 AAGGAGGAGAGGAAAATGGAACCAACACTAGAATAT-CACCCGTCTCCCCCCACCTCCCATCCCCC-AGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGA-TCCTGTACCAGAGAGTGAATATGAGGGCCTGCCCTGTTCTCTGATACA
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         359093 132 -   1771730 AAGGAGGGGAGGAAAACGGGACCAACCCTAGAATAT-CACCC------------------GCCCTCCGGTCCTGAGGGAGAGGAATCCTCCTTGGTTTCCAGA-TCCTGTCCCAGAGAGTGACTTTGAGAGCCCGCCCTGTTCTCTGATACA
i cebCap1.NW_016107755v1       I 169 C 0
s aotNan1.NW_018496904v1          98154 132 -    383796 AAGGAGGGGAGGAAAATGGGACTAACACTAGAATAT-CACCC------------------TCCCTCCAGTCCTAAGGGAGACGAATCCTCCTGGGTTTCCAGA-TCCTCTACCAGAGAGTGACTCTCAGGGCCTGCCCTGTTCTCTGATACA
i aotNan1.NW_018496904v1       I 50 C 0
s otoGar3.GL873550             16914060 128 -  18854210 AAGGAGGGGAGGAAAATGGGCCTGAGGATAAAATAC-CTCCC------------------TCCAACTGGTCCAAAGGAGGAAAACTCCTC--GAGTGTCCAGA---CCAGATCGGACAGTGACTCTGAGGGCCCTCCCTTCCCTCTAGGACA
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  934428 123 +  72498081 -----GGAAGGGAATATGGACTCAGGGTCAGAACACGGCCCC------------------TCCCACGGGT---GGGGACAGGGGATCCGCCTGGGTGTTGATAGTCCTACTAGGGTGACTCA--CCCAGAGGCCGCTTTTCTCGA-AGGACA
i canFam3.chr12                C 0 C 0
e colAng1.NW_012115566v1        2822012 343 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=776646.000000
s hg38.chr6_GL000254v2_alt      1063335 130 +   4827813 ATTAACGGATGAAGTCTCTGCGGGAAAGGAGGGGAAGA---CAATCCCTGGAATACTGATACGCGGTCCCCTTTGACCCC-CCAGCAGCCTT-GGGCACCAGGAATTTTCCTCTCAGGCCTTGTTCTCTGCCTCA
s panTro5.chr6                 30028989 130 + 175400573 ATTAACGGATGAAGTCTCTGCGGGAAAGGAGGGGAAGA---CAATCCCTGGAATACTGATACGCGGTCCCCTTTGACCCC-CCAGCAGCCTT-GGGCACCAGGAATTTTCCTCTCAGGCCTTGTTCTTTGCCTCA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30259638 130 + 173848474 ATTAACGGATGAAGTCTCTGCGGGAAAGGAAGGGAAGA---CAATCCCTGGAATACTGATACGCGGTCCCCTTTGACCCC-CCAGCAGCCTT-GGGCACCAGGAATTTTCCTCTCAGGCCTTGTTCTCTGCCTCA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6062026 130 +   6154872 ATTAACGGATGAAGTCTCTGCGGGAAAGGAGGGGAAGA---CAATCCCTGGAATACTGATACGCGGTCCCCTTTGACCCC-CCAGCAGCCTT-GGGCACCAGGAATTTTCCTCTCAGGCCTTGTTCTCTGCCTCA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74737414 130 + 122973662 ATTAAAGCATGAAGTCTCTGAGGGAAGGGAGGGGAAGA---CAATCCCTGGAATACTGATCAGCGGTCCCCTTTGTCCCC-ACAGCAGCCTT-GGGCACCAGGAATTTTCCTCTCAGGCCTTGTTCTTTGCCTCA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30499295 130 + 172585720 ATTAAAGGATGAAGTCTCTGAGGGAAACAAGGGGAAGA---CAATCCCTGGAATACTGATCAGCTGTCCCCTTTGACCCC-GCAGCAGCCTT-GAGCACCAGACATTTTCCTCTCAGCCTTTGTTATCTGCCTCA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   119008 130 +    231697 ATTAAAGGATGAAGTCTCTGAGGGAAACAAGGGGAAGA---CAATCCCTGGAATACGGATCAGCTGTCCCCTTTGACCCC-GCAGCAGCCTT-GAGCACCAGGCATTTTCCTCTCAGCCTTTGTTATCTGCCTCA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          15165 129 +   1495729 A-TAAAGGATGAAGTTTCTGAGGGAGAGGAGGGGAAGA---CAATCCCTGGAATACTGATCTGCTGTCCCCTTTGTCCCC-GCAGCAGCCTT-GGGCACCAGGAATTTTCCTCTCAGGACTTGTTCTCTGCCTCA
i macNem1.NW_012012100v1       C 0 C 0
s colAng1.NW_012115566v1        2822355 129 -   3067355 ATTAAGGGATGAAGTCTCTGAGGGA-ATGGAGGGAAGA---TAATCCCTGGAATACTGGTCAGCGGTCCTCCTTGACACC-ACAGCAGCCTT-GGGGACCGTGACTTTTCCTCTCAGACCTTGTTCTCTGCCTCA
i colAng1.NW_012115566v1       I 343 I 7
s calJac3.chr4                 30145390 132 + 171630274 ATTAAGGGATGACGTCTCTGAGGAAATGAAGGGGAAGA---CAGTCCCTGGAATACTGATCAGGGGTCCACTTTGACCCCTGCAGCACCCTTGGGGCACCGTGATTTCTTCACTCAGGCCTTGTTCTCTGCCTCA
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                25117 132 +    187130 ATTAAGGGTTGCAGTCTCTGAGGGAAAGGAGGGGAAGAAGTCAATCCCAGGAATACTGATCAGGGGTTCCCTGTGACCCC-ACAGCAGTGCT-GGGCACCAGGATTT-TTCTCTCCTGCCTTGTCCTCTTTCTCA
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         359225 127 -   1771730 ATTAAGGGTTGCAG--TCTGAGGGAAAGGAGGGGAAGT---CAATTCCTGGAATACTGATCAGGGGTTCCCTGTGACCCC-ACAGCAGCGTT-GGGCACCAGGATTT-TCCTCTCCTGCCTTGTCCTCTGCCCCA
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          98286 131 -    383796 ATTAAGGGTTGCAGTCTCTGAGGTAAAGGAGGAGAAGT---CAATCCCGGGAATACTGATCAGGGGTTCCCTGTGACCCCCACAGCAGCATT-GGGCACCAGGATTTTTACTCTCCTGCCTTGTCCTCTGCCTCA
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16914188 130 -  18854210 GTTAAGTGACGAAGTCTCCCGGGGAGCAGACATACATA---CAGTCCCTGAAATACTGGTCCATGGTTCCCTCTGACCTT-GCAGCAGCTTT-GGGCACCATGACCTTTTCTCTCAGGCCTTGTTCTCCGTCCCA
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  934551 123 +  72498081 ATGGAGCAATCCAGGGTCTCCGGGAGGCAGGTGGAGGC---CA--TCCTGAGATAACCGCCAGTGGTGCCCTTTGACCTG-GCAGCTGGGT--GGGAACCATGACTTTCCCTC-AAGGCCTTCTTCAATGAA---
i canFam3.chr12                C 0 C 0
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=162814.000000
s hg38.chr6_GL000254v2_alt      1063465 36 +   4827813 TACTCAATGTGT-GT--GGGGGTCTGATTCCAGCTCTTC
s panTro5.chr6                 30029119 36 + 175400573 TACTCAATGTGT-GG--GGGGGTCTGATTCCAGCTCTTC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30259768 36 + 173848474 TACTCAATGTGT-GG--GGGGGTCTGATTCCAGCTCTTC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6062156 36 +   6154872 TACTCAATGTGT-GT--GGGGGTCTGATTCCAGCTCTTC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74737544 38 + 122973662 CACTCCATGTGT-ATTCGTGGGTCTGATTCCAGCTCTTT
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30499425 38 + 172585720 CACTCAATGTGT-ATCTGTTGGTCTGATTCCAGCTCTTC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   119138 38 +    231697 CACTCAATGTGT-ATCTGTTGGTCTGATTCCAGCTCTTC
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          15294 38 +   1495729 CACTCAATCTGT-ATTTGTGGGTCTGACTCCAGCTCTTT
i macNem1.NW_012012100v1       C 0 C 0
s calJac3.chr4                 30145522 36 + 171630274 CACTCAATGCGT-TT--TATGGTCTGATTCTAGCTTTTC
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                25249 36 +    187130 CATTCAATGTGT-GT--GGGGGTTTGACTCCAGCTCCTC
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         359352 37 -   1771730 CACTCAGTGTGTGGG--GGGGGTCTGACTCCAGCTCCTC
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          98417 36 -    383796 CACTCAATGTGT-GT--GGGAGTCTGACTCCAGCTCCTC
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16914318 30 -  18854210 --CTC----TGT-TT--GGAGGTCTGATTGCAGCCCTTC
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  934674 31 +  72498081 -----AACATAT-TT--GGAGCTTGAACTGGGAGTTTTC
i canFam3.chr12                C 0 C 0
e colAng1.NW_012115566v1        2822484  7 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=5148191.000000
s hg38.chr6_GL000254v2_alt      1063501 760 +   4827813 TGAGTCCCTCGGCCTCCACTCAGGTCAGGACCAGAAAT--------------------------------CTCTGTTT-CCGCCTCAGACACTAGAACTTTCCAAGGAATAAGAGATTATCCCAGGTGCCTGTGTCCAGAATGTTGTCTGGGTTCTGTGCTCCCTTCCC-CACCCCAGATGTCCCATCCATTCTCAGGATGGTCACATG------GGTG---------CTGTGTCTCATG-AGGAATGCAAAGTGCCTGAATTTTCTACCTCTTGC-CCTCAGATCCCCT-GAAGGCACAGGTAACCCTCCACCCCATCTCCAACTATGAGGCCACGCTGAGGTGCTGGGCCCTGGGCTTCTACCCTCTGGAGATCACACTGACCCAGGAGCGGGATGGGGAGGACCAAATTCAGGATGCAGAGTTTGTGGAGACCAGACTTGCAGGG---TACAGAACCTTCCAGAAGTGGGCAGCTGCAGTGGTGTCTTCTGGAGAGAAGCAGAGGTACACATGCCATGTGCAGCACGAG-----GGGTTGCCTGAGCCCCTCACACTAA-----------------GATGGGGTAAGGAGACGAATGAGGG-GTCATGTCTCTTCTCAGGCAAAGCAGAAGTCCTTCTGGAGCCTTTAAGCAGGGTCAGGG-CT-GAGGCCTGGGGGTCAGGGCCCCTCACGTTCACCTCCTTTCTTAGAGCTGTCTTCCCAGCCCATCATCCCCGTTGTGGGCATCATTGCTGGCCTGGTTCTTCTAGTTGCTGTAATCACTGTAGCTGTGGTC---------------GCTGCTGTGATGTGGAGGAATAAGATCCCA-----GGTAGGAAAGGG-
s panTro5.chr6                 30029155 760 + 175400573 TGAGTCCCTCGGCCTCCACTCAGGTCAGGACCAGAAAT--------------------------------CTCTGTTT-CCGCCTCAGACACTAGAACTTTCCAAGGAATAAGAGATTATCCCAGGTGCTTGTGTCCAGAATGCTGTCTGGGTTCTGTGCTCCCTTCCC-CACCCCAGGTGTCCCGTCCATTCTCAGGATGGTCACATG------GGTG---------CTGTGTCTCATG-AGGAATGCAAAGTGCCTGAATTTTCTACCTCTTGC-CCTCAGATCCCCT-AAAGGCACAGGTAACCCACCACCCCATCTCCAACCATGAGGCCGTGCTGAGGTGCTGGGCCCTGGGCTTCTACCCTCTGGAGATCACACTGACCCAGGAGTGGGATGGGGAGGACCAAATTCAGGATGCAGAGTTTGTGGGGACCAGACTTGCACGG---TACAGAACCTTCCAGAAGTGGGCAGCTGCAGTGGTGTCTTCTGGAGAGAAGCAGAGGTACACATGCCATGTGCAGCACGAG-----GGGTTGCCTGAGCCCCTCACACTAA-----------------GATGGGGTAAGGAGACGAATGAGGG-GTCATGTCTCTTCTCAGGCAAAGCAGAAGTCCTTCTGGAGCCTTTAAGCAGGGTCAGGG-CT-GAGGCCTGGGGGTCAGGGCCCCTCACGTTCACCTCCTTTCTTAGAGCTGTCTTCCCAGCCCATCATCCCCGTTGTGGGCATCATTGCTGGCCTGGTTCTTCTAGTTGCTGTATTCACTGTAGCTGTGGTC---------------GCTGCTGTGATGTGGAGGAATAAGATCCCA-----GGTAGGAAAGGG-
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30259804 760 + 173848474 TGAGTCCCTCGGCCTCCACTCAGGTCAGGACCAGAAAT--------------------------------CTCTGTTT-CCGCCTCAGACACTAGAACTTTCCAAGGAATAAGAGATTATCCCAGGTGCTTGTGTCCAGAATGCTGTCTGGGTTCTGTGCTCCCTTCCC-CACCCCAGGTGTCCCGTCCATTCTCAGGATGGTCACATG------GGTG---------CTGTGTCTCATG-AGGAATGCAAAGTGCCTGAATTTTCTACCTCTTGC-CCTCAGATCCCCT-GAAGGCACAGGTAACCCACCACCCCATCTCCAACCATGAGGCCGTGCTGAGGTGCTGGGCCCTGGGCTTCTACCCTCTGGAGATCACACTGACCCAGGAGTGGGATGGGGAGGACCAAATTCAGGATGCAGAGTTTGTGGGGACCAGACTTGCACGG---TACAGAACCTTCCAGAAGTGGGCAGCTGCAGTGGTGTCTTCTGGAGAGAAGCAGAGGTACACATGCCATGTGCAGCACGAG-----GGGTTGCCTGAGCCCCTCACACTAA-----------------GATGGGGTAAGGAGACGAATGAGGG-GTCATGTCTCTTCTCAGGCAAAGCAGAAGTCCTTCTGGAGCCTTTAAGCAGGGTCAGGG-CT-GAGGCCTGGGGGTCAGGGCCCCTCACGTTCACCTCCTTTCTTAGAGCTGTCTTCCCAGCCCATCATCCCCGTTGTGGGCATCATTGCTGGCCTGGTTCTTCTAGTTGCTGTATTCACTGTAGCTGTGGTC---------------GCTGCTGTGATGTGGAGGAATAAGATCCCA-----GGTAGGAAAGGG-
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6062192 760 +   6154872 TGAGTCCCTCGGCCTCCACTCAGGTCAGGACCAAAAAT--------------------------------CTCTGTTT-CCGCCTCAGACACTAGAACTTTCCAAGGAATAAGAGATTATCCCAGGTGCCTGTGTCCAGAATGCTGTCTGGGTTCTGTGCTCCCTTCCC-CACCCCAGGTGTCCCGTCCATTCTCAGGATGGTCACATG------GGTG---------CTGTGTCTCATG-AGGAATGCAAAGTGCCTGAATTTTCTACCTCTTGC-CCTCAGATCCCCT-AAAGGCACAGGTAACCCACCACCCCATCTCCAACCATGAGGCCATGCTGAGGTGCTGGGCCCTGGGCTTCTACCCTCTGGAGATCACACTGACCCAGGAGTGGGATGGGGAGGACCAAATTCAGGATGCAGAGTTTGTGGAGACCAGACTTGCACGG---TACAGAACCTTCCAGAAGTGGGCAGCTGCAGTGGTGTCTTCTGGAGAGAAGCAGAGGTACACATGCCATGTGCAGCACGAG-----GGGTTGCCTGAGCCCCTCACACTAA-----------------GAGGGGGTAAGGAGACGAATGAGGG-GTCATGTCTCTTCTCAGGCAAAGCAGAAGTCCTTCTGGAGCCTTTAAGCAGGGTCAGGG-CT-GAGGCCTGGGGGTCAGGGCCCCTCACGTTCACCTCCTTTCTTAGAGCTGTCTTCCCAGCCCATCATCCCCGTTGTGGGCATCATTGCTAGTCTGGTTCTTCTAGTTGCTGTATTCACTGTAGCTGTGGTC---------------GCTGCTGTGATGTGGAGGAATAAGATCCCA-----GGTAGGAAAGGG-
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74737582 757 + 122973662 TGAGTCCCTCGGCCTCCGCTCAGGTCAGGACCAGAAAT--------------------------------CTCTGTTC-CGGCTTCACACACTAGAACTTTATAAGGAATAGAAGATTGCCCCAGGTGCCTGTGTCTAGACTGGTGTCTGAGT----TGCTCCCTTCCC-CACTTCAGGTGTCCCGTCAATTTTCAGGATGGTCCCATG-----AGGTG---------GAATGTCCCATG-AGGAATGCAAAGTGCCTGAATTTTCTGACTCTTCC-CCTCAGAACCCCA-AAAGACTCACATGACCCACCACCCCATCTCCGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGTGGAGATCACATTGACCCAGTAGTGGGATGGGGAGGACCAAATGTAGGATGCAGAGCTTGTGGAGACCAGACCTGCAGGG---TACAGAACCTTCCAGAAGTGGGCAGCTGTGGTGATGTCTTCTGGAGAGGAGTAGAGATACACATGCCATGTGCAGCACTAG-----GGGCTGCCAGAGCCCCTCACCCTGA-----------------GAT-GGGTAAGGAGGGGGATGAGGG-GTCATATCTCCTCTCACGGGAACTAGGAGCCTTTCTGCAGCCCTTCAGCAAGGTCAGGGTTT-GAGGCCTGATGGTCAGGGCCCCTCACGTTCCCCTCCTTTCTTACAGCTGTCTTCCCAGCCCACCATCCCCATCGTGGGCATCGTTACTGTCCTGGTTGTTCTTGGTGCTGTTTTCACCAGAGCTGTGGTC---------------ACTGCTGTGATGTGGAAGAATAAGAGACCA-----GGTAGGAAAGAG-
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30499463 765 + 172585720 TGAGTCCCTCAGCCTCCACTCAGGTCAAGACCAGAAAT--------------------------------CTCTGTTC-CTGCCTCAGACACTAGAACTTTCTAAGGAATAGGAGATTATCCCAGATGCCTGTGTCCAGGATGGTGTCTGGGTTCTGTGCTCCCTTCCC-CTT----GGTGTCCTGTCCATTCTCAGGATGGTCACATGTATGCTGCTG---------GAGTGTCCCATG-AGGAATGC--AGTGCCCGAATTTTCTGACTCTTTC-CCTCAGATCCCCC-AAAGACACACGTGACCCACCAGTCCATCTCAGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTACTACCCTGTGGAGATCACACTGACCCAGCAGCAGGATCGGAAGAACCAAATTCAAGATGCAGAGCTTATGGGAACCAGATCTACAGGG---TACAGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGTCTTCTGGAGAGCAGCAGAGATACGCATGCCATGTGCAGCACGAGCACTCACCCTGCCAGAGCCCCTCACCCTGA-----------------GATTGGCTAAGGAGACGAATGAGGG-GTCATGTCTCTTCTCAGGGAAAGCAGGAGCCCTTCTGGAGCCCTTCAGCCAGGTCAGGG-CT-GAGGCCTGGGGGTCAGGGTCCCCCACAGTCCCCTCCTTTCTTAGGGCCATCTTCCCAGCCCACATTCCCCATTGTGGGCATCGTTACTGTCCTGGTTGTTCTTGGTGCTGTGGTCCCGGGTGCTGTGGTC---------------GCTGCTGTGATGTGGAAGAATAAGAGCCCA-----GGTAGGAAAGAG-
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   119176 765 +    231697 TGAGTCCCTCAGCCTCCACTCAGGTCAAGACCAGAAAT--------------------------------CTCTGTTC-CTGCCTCAGACACTAGAACTTTCTAAGGAATAGGAGATTATCCCAGGTGCCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCCC-CTT----GGTGTCCTGTCCATTCTCAGGATGGTCACATGTATGCTGCTG---------GAGTGTCCCATG-AGGAATGC--AGTGCCCGAATTTTCTGACTCTTTC-CCTCAGATCCCCC-AAAGACACACGTGACCCACCAGTCCATCTCAGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTACTACCCTGTGGAGATCACACTGACCCAGCAGCAGGATCGGAAGAACCAAATTCAAGATGCAGAGCTTATGGGAACCAGATCTACAGGG---TACAGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGTCTTCTGGAGAGCAGCAGAGATACGCATGCCATGTGCAGCACGAGCACTCACCCTGCCAGAGCCCCTCACCCGGA-----------------GATTGGCTAAGGAGACGAATGAGGG-GTCATGTCTCTTCTCAGGGAAAGCAGGAGCCCTTCTGGAGCCCTTCAGCCAGGTCAGGG-CT-GAGGCCTGGGGGTCAGGGTCCCCCACAGTCCCCTCCTTTCTTAGGGCCATCTTCCCAGCCCACATTCCCCATTGTGGGCATCGTTACTGTCCTGGTTGTTCTTGGTGCTGTGGTCCCGGGTGCTGTGGTC---------------GCTGCTGTGATGTGGAAGAATAAGAGCCCA-----GGTAGGAAAGAG-
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          15332 761 +   1495729 TAAGTCCCTCAGCCTCCACTCAGGCCAGGACCAGAAGT--------------------------------CTCTGTTC-TGGCCTTAGACACTAGAACTTTCCAAGGAATAGGAGATTTCCCCAGGTGCCTGTGTCCAGACTGGTGTCTGAGT----TGCTCCCTTCCC-CTCTTCAGGTGTCCCATCAATTCTCAGGATGGTCCCATG-----AGTTG---------GAATGTCCCATG-AGGAATGCAAAGTGCCTGAATGTTCTGACTCTTCC-CCTCAGATCCCCCAAAAGACACACATGACCCACCACCCCATCTCCAACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGTGGAGATCACACTGACCCAGTAGCGGGATGGGGAGGACCAAATGCAGGATGC--AGTTTATGGAGACCAGACCTGCAGGG---TACAGAAACTTCCAGAAGTGGGCAGCCACGGTGGTGTCTTCTGGAGAGGAGCAGAGATACACATGCCATGTGCAGCACGAG-----GGGCTGCCAGAGCCACTCACCCTGA-----------------GGTGGG-TAAGGAGGGGGATGAGGG-GTCACATCTCTTCTCACGGGAAGCAGGAGTCCTTCCGGAGCCCTTCAGCAACGTCAGGG-TTGGAGGCCTGATGGTCAGAGCGCCTCACGTTCCCCTCCTTTCTTAGAGCTGTCTTCCCAGCCCACCAACCCCATCTTGGGCATCGTTACTGTCCTGGTTGCTCTTGGTGCTGTGGTCACTGGAGCTGTGGTC---------------ACTGCTGTGATGTGGAGGAACAAGAGCCCAGCCCGGGTAGGAAAGGG-
i macNem1.NW_012012100v1       C 0 C 0
s colAng1.NW_012115566v1        2822491 748 -   3067355 TGAGTCCCTCAGCCTCCACTCAGGTCAGGACCAGAAGT--------------------------------CCCTGT-----GGTTAGGGGACTCAAACGTTCCAAGGAATAGGAGATTATCCCAGGTGCCTGTCTCCAGGCTGGTGTCTGGGTTCTATGCTCCCTTCCC-CACCCCAGGTAGCCTGTCCATTCACAGGATGGTCACATGGGTGCTGTTG---------GGGTGTCCCATG-AGGAATGCAAAGTGCCTGAATTTTATGACTCTTCT-CCTCAGATCCTCC-AAAGACACATGTGACCCACCACCCTATCTCCAATCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCAGAGATCACACTGACCTGGCAGAGGGATGGGGAGGACCAAACTCAGGACATGGATCTTGTGGACACCAGACCTGCAGGG---GATGGAACTTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACCTGCCATGTGCAGCACAAA-----GGGTTGCGTGAGCCCCTCACCCTGA-----------------GATGGGGTAAAGAGGGGAATGGGGG-GTCACATGTATTCTCAGGGAAAGCA-----------GGAGCCCTTCAGCAGGGTCAGGG-CT-GAGGCCTGGAGATCAGGGCCCCTCACCTTCCCCTCCTTTCCCAGAGCTGTCTCCCCAACCCGCCATCCCCATCGTGGGCATCGTTGCTGGCCTGGTTGTCCTTGGAGCTGTGATCACTGGAGCTGTGGTC---------------ACTGCTGTGATGTGGAGG---AAGAAACCA-----GGTAGGGAAGGG-
i colAng1.NW_012115566v1       I 7 C 0
s calJac3.chr4                 30145558 805 + 171630274 TGAGTCCCTCGGCCTCCACTCAGGTCAGGACCAGAAGT--------------------------------CACTGTTT-CATTCTCAGAGACTATAACTTTCCAAGGAATAGGAGATTATCCCAGGTGCCTGTGTCCAGGCCAGTGTCTGGGTTCTGTGGTCCCTTCCC-CACCCCAGGTGTCCTGTCCATTCTCA-GATGGTCACATGGGTGCTGCTGTGGTCTCATGGGTATTCCATG-AGAGATGCCAAGTGCCTGAATGTTCTGACCCTTCC-TGTCAGACCCCCC-AAAGACGCATGTGACCCACCACCCTGTCTCTGATCATGAGGCCACCCTGAGGTGCTGGGCCCTAGGCTTCTACCCTGTGGAGATCACACTGACCTGGCAGAAGGATGGGGAGGACCAAACTCAGGACGCCGAGCTTGTGGAGACCAGGCCAGCAGGG---GATGGAACCTTCCAGAAGTGGACAGCTGTGGTGGTGCCTTCTGGAGAAGAGCAGGGATACATGTGCCATGTGCAGCACAAG-----GGGCTGCCCAAACCCCTCACCCTGAGATGGGGTAAGGAGGGGGATGGGGTAAGAGGG-GGGTGAGGT-GTCACATCTCTTCTCAGGGAAAGCAGGAGCCCATCTGGAGCCTTTCAGCAGGGTCAGGG-CT-GAGACCTGGGGGTCAGGGCCCTTCATGTTCCCCTCCTTTCCCAGAGCCGTCTTCCCAGCTCACCATCCCCATCGTGGGCATCGTTGCTGACTTGGTTTTCTTTGGAGCTGTGGTCATCGGAGCTGTGGTCATCGGAGCTGTGGTGACTGCTATGATGTGGAGGAGGAAGAGCTCA-----GGTAGGGAAACG-
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                25285 760 +    187130 TGAGTCCCTTGGCCTCCACTCAGATAAGGGCCAGAAGT--------------------------------CCCAGTTC-CCCCCTT-TAGACTAGAACTTTCCAAGGAACAGGATATTATCCCAGGTGCCTGTGTCCAGGCTGGTGTCTGTGTTCTGTGCTCCCTTCCC-TATCCCAGGTGTCCTGCCCATTCTCAGGATGGTCACATGGGAGCTGCTG---------GGGTGTCCCATG-AGAGATGCTAAGTGCCTGAATTTTCTGACTCTTCC-CTGCAGAGCCCCC-CAAGACACATGTGTCCCATCATCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTTGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACACAAGACATAGAGCTGGTAGAGACCAGGCCCACGGGG---GATGGAAACTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACATGTCATGTGCAGCATGAG-----GGGCTGTGCGAGCCCCTCACCCTGA-----------------GATGGGGTAAGAAGG-GGATGGGGT-GTCATGTCTCTT---AGGGAAAGCAGGAGCCCCTCTGCAGCACTTCAGCAGGATCAGGG-CT-GGGACCT-GGGATCAGGGCCCCTCACCTTCTCCTCCTTTCCCAGAGCCGTCTTCCCAGCCCACCATCCCCATCGTGGGCATCACTGCTGTCCTGGCTGTCCTTGGAGCTGTAGTCACTGGAGCTGTGGTC---------------GCTGCTGTGATGTGGAGGAAGAAGAGCTCA-----GGTGAGGAAGGG-
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         359389 756 -   1771730 TGAGTCCCTTGGCCTCCACTCAGATCAGGTCCAGAA--------------------------------------GTTC-CCCACTCAGAGACTAGGACTTTCCAAGGAATAAGAGATTATCCCAGATGCCTGTGTCCAGGCTGGGGTCTGGGTTCTGTGCTCCCTTCCC-CACCCCAGGTGTCCTGTCCATTCTCAGGATAATCACATGGGTGCTGCAG---------TGGTGTCCCATG-AAAGATGCAAAGTGCCTTTAGTTTCCGACTCTTCC-CTTCAGAGCCCCC-CAAGACACACGTGACCCACCACCCCATCTCTGATCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTATCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACATGGAGCTTGTGGAGACCAGGCCCACAGGG---GATGGAAACTTCCAGAAGTGGGCAGCTGTGGTGGTGCTTTCTGGAGAGGAGCAGAGATACACATGCCATGTGCAGCACGAG-----GGGCTGCCTGAGCCCCTCACCCTGA-----------------GATGGGGTAAGGAGG-GGATGGGGT-GTCATGTCTCTT---AGGGAAAGCAGGAGCCACTCTGCAACCTTTCAGCACGGTTGGGG-CT-GGGTCCTGGGGGTCCAGGACCCTCACCTTCCCCTCCTTTTCCAGAGCCACCTTCCCAGCCCACCATCCCCATCGTGGGCATCGTTGCTGGCCTGGCTGTCCTTGGAGCTGTAGTCACTGGAGCTGTGGTC---------------GCTGCTGTGATGTGGAGGAAGAAGAGCTCA-----GGTGAGGAAAGG-
i cebCap1.NW_016107755v1       C 0 I 132
s aotNan1.NW_018496904v1          98453 761 -    383796 TGAGTCCCTTGGCCTCCACTCACATCAGGACCAGAAGT--------------------------------CCCGGATC-CCCCCCT-GAGACTAGAACTTTCCAAGGAACAGGTCATTATCCCAGGTGCCTGTGTCCAGGCTGGTGTCTGTATTCTGTGCTCCCTTCCT-TACCCCAGGTGTCCTGTCCATTCTCAGGATGGTCACATGGGAGCTGCTG---------GGGTGTCCCATG-AGAGATGCAAGATGTCTGAATTTTCTGACTCTTCC-CTTCAGAGCCCCC-CAAGACACACGTGACCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCTCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACATGGAGCTCGTAGAGACCAGGCCTACGGGG---GATGGAACCTTCCAGAAGTGGGCAGCTGTGTTGGTGCCTTCTGGAGAGGAGCAGAGATACATATGCCATGTGCAGCACGAG-----GGGCTGCCTGAGCCCCTCACCCTGA-----------------GATGGGGTAAGGAGG-GGATGGGGT-GTCATGTCTCTT---AGGGAAAGCAAGAACCCCTCTGCAGCCCTTCAACAGGGTCAGGG-CT-GGAGCCTGGGGTTCAGGGCTCCTCACCTTCCCCTCCTTTCCCAGAGCCGTCTTCCCAGCCCACCATCCCCATCGTGGGCATCGTTGCTGGCCTGGCTGTCCTTGTTGCTGTAGTCACTGGAGCTGTGGTC---------------GCTGCTGTGAGGTGGAGGACGAAGAGCTCA-----GGTGAGGAAGGG-
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16914348 754 -  18854210 TGGATCACTCAACCTCCACTCAGGTCAGGACCAGAAGT--------------------------------CCCTGTTCTCCTGTTCAGAGACTGAAACTTTC-AAGGAATAGGA------------CCCTTGGGGCCAGGGTGGTGACTGGGTTTTGCACTCCCTTCCC-CACCCCAGTTGTCCTGTCCATTCTCAGG-TTGTCACATGAGTGCTGCTG---------GAGTGTC-CATG-AGGGATGAAAAGTGCCTGAATTTTCTGACTCTTCC-CCTCAGATCCCCC-AAAGACTCATGTGACCCATCACCCCACCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGACTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACATGGACCTTATAGAGACCAGGCCTTCAGGGGATGATAGAACCTTCCAGAAGTGGGTGGCTGTGGTGGTGCCTTCTGGAGAAGAGCAGAGATACACATGCCATGTGCAGCATGAG-----GGACTAAGGGAGCCCCTCACCCTGA-----------------GATGGGGTAAGAAGGAGAGTGGGGGCATCATATCTCTTCTCAGGGAAAGCAGGGGCCCTTCTGGAGCCCTTCAGCAGGGTCAGGA-CT-GAGGCCT-GGGGTCA-GGCCCCTCACCTTCTTGTCCTTTCCCAGAGTCATCTTCCCAGCCCAGCATTCCCATGGGGGGCATTGTTGCTGGCCTGGTTCTCCTTGGAACTTTGCTCACTGGAGCTGTGGTT---------------GCCACTGTGATGCGGAGGAAGAAGAGCTCA-----GGTAGGGAAGGG-
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  934705 770 +  72498081 TGACTCCTTCAGCCTCCACCACGGTCAGGACCATTAGTGTGCTCTCCACCTTAGACCTGCAGCCTCCTACCCTGGACT-CTCTCCCTGATTCTAGAA-TTTCTAAAGATTAGGA---CATCCCAAAGGCT-------AGGTTGGTGACTGGGCTTTGTGCTTCTTCCAAGTGAACCAACTGCCCTGTCCACCCT-AGGATGGTCACACAAATGCAGTCT---------CAGTGGACCACGCAGTTAACCAAAGTG--TGGGTTTTCCAATTCTTCCTTCTCAGAACCCCC-CAGCACACGTGTGACCCGCCACCCCGTCTCTGACCATGAGGTCACCCTGAGGTGCTGGGCGCTGGGCTTCTACCCTGCGGAGATCACCCTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACAGAGGTTGTGGACACAAGGCCTGCAGGA---GATGGGACCTTCCAGAAGTGGGCGGCCGTGGTGGTGCCCTCTGGACAGGAGCAGAGATACACGTGCCACGTGCAGCATGAG-----GGGCTGGCGGAGCCTGTCACGCGGA-----------------GATGGGGTAAGGAG--GGCCTCGGG-GTAGAGCTTCTACTCAGGGCAAGT-GGAGCTCTTCTGGAGAATTTCAGCAGAGTCAGGT-CT-CAAGCCAGAGGCT---GGACCCTCATCCTCCCTCCCCTTTCCAGAGCCTTCCCCTCTGTCCACCATTGTCATCGT---CAGCATTGCTGCTCTGGTTCTCCT------CGTGGTCGCTGGG---GTGATT---------------GGAGCTGTGATCTGGAGGAAGCAGCGCTCA-----GGTAGGGAACCGA
i canFam3.chr12                C 0 C 0
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=26078.000000
s hg38.chr6_GL000254v2_alt      1064261 5 +   4827813 GTGAG--
s panTro5.chr6                 30029915 5 + 175400573 GTGAG--
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30260564 5 + 173848474 GTGAG--
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6062952 5 +   6154872 GTGAG--
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74738339 5 + 122973662 GTGAG--
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30500228 5 + 172585720 TTGAA--
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   119941 5 +    231697 TTGAA--
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          16093 5 +   1495729 GTGAG--
i macNem1.NW_012012100v1       C 0 C 0
s colAng1.NW_012115566v1        2823239 5 -   3067355 GTGAG--
i colAng1.NW_012115566v1       C 0 I 129
s calJac3.chr4                 30146363 5 + 171630274 GTGAG--
i calJac3.chr4                 C 0 I 7
s saiBol1.JH378364                26045 5 +    187130 GTGAG--
i saiBol1.JH378364             C 0 I 7
s aotNan1.NW_018496904v1          99214 5 -    383796 GTGAG--
i aotNan1.NW_018496904v1       C 0 I 128
s otoGar3.GL873550             16915102 5 -  18854210 GTGAG--
i otoGar3.GL873550             C 0 I 7
s canFam3.chr12                  935475 7 +  72498081 CTGAATA
i canFam3.chr12                C 0 C 0
e cebCap1.NW_016107755v1         360145 132 -   1771730 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=298048.000000
s hg38.chr6_GL000254v2_alt      1064266 125 +   4827813 CTCTGAGTTTCCTTCTTCCATTGGTGGATTTCAAGCCCCAGGTAGGAGTAGGCTCATATCTTGCCTAGT---TGTGAGGCACCATCTCCA--CACACAT-TTACCCTGTTCAGAGGCCCTGTCTATCAACG
s panTro5.chr6                 30029920 125 + 175400573 CTCTGAGTTTCCTTCTTCCATTGGTGGATTTCAAGCCCCAGGTAGGAGTTGGCTCATATCTTGCCTAGT---TGTGAGGCATCATCTCCA--CGCACAT-TTACCCTGTTCAGAGGCCCTGTCTATCAACA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30260569 125 + 173848474 CTCTGAGTTTCCTTCTTCCATTGGTGGATTTCAAGCCCCAGGTAGGAGTTGGCTCATATCTTGCCTAGT---TGTGAGGCATCATCTCCA--CGCACAT-TTACCCTGTTCAGAGGCCCTGTCTGTCAACA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6062957 125 +   6154872 CTCTGAGTTTCCTTCTTCCATTGGTGGATTTCAAGCCCCAGGTAGGAATTGGCTCATATCTTGCCTAGT---TGTGAGGCACCATCTCCA--TGCACAT-TTACCCTGTTCAGAGGCCCTGTCTATCAACA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74738344  97 + 122973662 CTCCGAGTTTTCTTCTTCCATTGGTGGATTCCCAGCCCCAGATAGGAGTTGGCTTGTATCCTGCCTAGT---CGTGAGGCACCATCT-------------------------------CTGTCTATCAACA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30500233 121 + 172585720 CTCCTAGTTTTCTTCTTCCATTGGTGGATTTCAAGCCCCAGATGGAAGTTGGCTCCTTTCCTGCCTAGT---TGTGAGGCACCATCTCCA--TGCACAT-TTACCCTGTTCAGATGC----TCTGTCAACT
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   119946 121 +    231697 CTCCTAGTTTTATTCTTCCATTGGTGGATTTCAAGCCCCAGATGGAAGTTGGCTCCTTTCCTGCCTAGT---TGTGAGGCACCATCTCCA--TGCACAT-TTACCCTGTTCAGATGC----TCTGTCAACT
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          16098 101 +   1495729 CTCCGAGTTTTCTTCTTCCATTGGTGGATTCCCAGCCCCAGATAGGAGTTGGCTTGTATTCTGCCTAGC---TGTGAGGCACCATCTCTG--TGC---------------------C----TCTATCAACA
i macNem1.NW_012012100v1       C 0 C 0
s calJac3.chr4                 30146375 120 + 171630274 GTCTGGGTTTTCTTGTCCCACTCA-GGGTTTCAAGCCCCAGGTAGAAGT------GTTCCCTGCCTCATTAGTGGAAAGCACCATCCACA--CATGGGC-CAACCCAGCCT-GGGGCCCTGTTTGCCAGTA
i calJac3.chr4                 I 7 C 0
s saiBol1.JH378364                26057 121 +    187130 GTCTGAGATTTCTTGTCCCACTGA-GGGTTCCAAGCCCCAGGTAGAAGT------GTACCCTGCCTGGTTACTGGGAAGCATCATCCACACTCATGAGC-CGACCTAGTCT--GGGCCCTGTGTGCCAGCA
i saiBol1.JH378364             I 7 C 0
s otoGar3.GL873550             16915114 121 -  18854210 ATCTTCATTTTCTTGTTCCACTGG-GGGTTTCAA-CCCTAGGTTGCAGT------GTGCCCCACCCCACTGCTGGGAAGTACCATCTGCA--CACACCTGCTTCCCCAGCCTGGGACCATGTGTGCCAACA
i otoGar3.GL873550             I 7 C 0
s canFam3.chr12                  935482 116 +  72498081 CTCTGTGTTTTCCTGTCCTGTTGGGGGGTTT-----CCTAGGGAGCACG------CTGTCCTGCCTTGTTAACGGGAAGTACCGTCCATA--TGCGGTTACTCTCCTACACTGGAGC--TGTGTACTCACA
i canFam3.chr12                C 0 C 0
e aotNan1.NW_018496904v1          99219 128 -    383796 I
e cebCap1.NW_016107755v1         360145 132 -   1771730 I
e colAng1.NW_012115566v1        2823244 129 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=930579.000000
s hg38.chr6_GL000254v2_alt      1064391 141 +   4827813 CTTACTCTTTTGTAAAGCacttgtgaaaatgaaggacaaatttatca--ccttg---attgtggtcatggGAACCTGACTCCCAGCAGTCACAGGT----CAGGGGAAGGTCCCTGCTGAGGACAGACCT-CAGGAGGACAATTGGTCCAG
s panTro5.chr6                 30030045 141 + 175400573 CTTACTCTTTTGTAAAGCACCTGTGAAAATGAAGGACAAATTTATCA--CCTTG---ATTGTAGTCATGGGAACCTGACTCCCAGCAGTCACAGGT----CAGGGGAAGGTCCCTGCTGAGGACAGACCT-CAGGAGGACAATTGGTCCAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30260694 141 + 173848474 CTTACTCTTTTGTAAAGCACCTGTGAAAATGAAGGACAAATTTATCA--CCTTG---ATTGTAGTCATGGGAACCTGACTCCCAGCAGTCACAGGT----CAGGGGAAGGTCCCTGCTGAGGACAGACCT-CAGGAGGACAATTGGTCCAG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6063082 141 +   6154872 CTTACTCTTTTGTAAAGCACCTGTGAAAATGAAGGACAAATTTATCA--CCTTG---ATTGTAGTCATGGGAACCTGACTCCCAGCAGTCACAGGT----CAGGGGAAGGTCCCTGCTGAGGACAGACCT-CAGGAGGACAATTGGTCCAG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74738441 141 + 122973662 CTTACTCTTTTGTAAAGAACTTGTGAAAATGAAGGACAAATTTATCA--CCTTC---ATTGGAGTCATGGGAACTTGACTCCCAGCAGACACAGGT----CAGGGGAAGGTACCCGCAGAGGACAGATCT-CACTAGGACAATTAGTCCAG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30500354 141 + 172585720 CTTACTCTTTTGTAAAGCACCTGTGAAATTGAAGGACAAATGTATCA--CCATG---ATTGTGGACATGGGAACCTGACTCCCAGCAGTCACAGGT----CAGGGGAAGGTCCCTGCTGAGGACAGACCT-CAGGAGGACAATTGGTCCAG
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   120067 141 +    231697 CTTACTCTTTTGTAAAGCACCTGTGAAATTGAAGGACAAATGTATCA--CCATG---ATTGTGGTCATGGGAACCTGACTCCCAGCAGTCACAGGT----CAGGGGAAGGTCCCTGCTGAGGACAGACCT-CAGGAGGACAATTGGTCCAG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          16199 141 +   1495729 CTTACTCTTTTGTAAAGAACTTGTGAAAATGAAGGACACATTTATCA--CCTTC---ATTGGAGTCATGGGAACCTGACTCCCAGCAGTCACAGGT----CAGGGGAAGGTACCCGCATAGGACAGACCT-CACTAGGACAATTAGTCCAG
i macNem1.NW_012012100v1       C 0 C 0
s colAng1.NW_012115566v1        2823373 145 -   3067355 CTTACTCTTTTGTAAAGCACCTGTGACATTGAGGGACAGATGTATTA--CTTTGATTATTGTGATGATGAGAGCCTGA-TCCCAGCAGTCACAGGT--TACAGGGGAAGGTCCCTGCTGAGGACAGACCT-CAAGAGGGTAGTTGGTCCAG
i colAng1.NW_012115566v1       I 129 I 207
s calJac3.chr4                 30146495 145 + 171630274 CTTACTGTTTTGTGAAGCACATGTGACAATGAAGGACAGATGTATCACCCCTTGATGACTGTGGTGTTGGGGTCCTGA-TTTCAGCATTCATGAGT----CAGGGGAAGTTCCCTGCTAAGGACAGACCT-TAGGAGGGCGGTTGCTCCAG
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                26178 146 +    187130 CTTACTCTTGTGTAAAGCACCTGTGACAATGAAGGACAGATGTGTCA--CCTTGATGATTGTGGTGATGGGA-CCTGA-TCCCAGCAGTCACAGGTATCACAAGGGAAGGTCCGTGCTGAGGACAGTCCT-TAGGAGGGCAGTTGGTCCAG
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         360277 145 -   1771730 CTTACTCTTGTGTAAAGCACCTGTGACAGTGAAGGACAGATGTATCA--CCTTGATGATTGTGGCGATGGGGACCTGA-TCCCAGCAGTCACAGGT--CACAAGGGAAAATCCCTGCTGAGGACAGTCCT-TAGGAGGGCAATTGGTCCAG
i cebCap1.NW_016107755v1       I 132 I 207
s aotNan1.NW_018496904v1          99347 145 -    383796 CTTACTCTTGTGTAAAACACCTGTGACAATGAAGGACAGATGTATCA--CCTTGATGACTGTGGTGATGGGGGCCTGA-TCCCAGCAGTCACAGGT--CACAAGGGAAGGTCCCTGCTGAGAACAGTCCT-TAGGGAGGCAGTTGGTCCAG
i aotNan1.NW_018496904v1       I 128 I 51710
s otoGar3.GL873550             16915235 146 -  18854210 CTTACTCTTTTGTGTAGCACGTGTGCCAATGAAGGACAGAGTTTTGA--TGTGG-TGATTGTAGTACTGGGGATCTGATCCCCAGTAGTCATAGGT--CAGAGAGGAAGGACCTTGCTTAGGACAGACCTCCAAAAGGGCAGTTGATCTAC
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  935598 144 +  72498081 CTCACTGTGCAGCAAA-CACTTGGGAAAATGAAGGCCAGAGTT-TTG--CCTTGGTGATTCTGGTGACGGGGA-CTGATTCCCAGCCGTCACAGGA--CAGAGCGGAAGGCCCCTGCTGAGGACAGACCTCCAGCAAGTCAGGTGGTCCAG
i canFam3.chr12                C 0 C 0
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=240251.000000
s hg38.chr6_GL000254v2_alt      1064532 68 +   4827813 CCTCAA--CACATCCTCTTCCCTTG-----GGTTTTCTGATCCTGACCTGGGTCTGTAGTCAC-----------AGTTCT-------GGAAAC
s panTro5.chr6                 30030186 68 + 175400573 CTTCAA--CACATCCTCTTCCCTCG-----GTTTTTCTGATCCTGACCTGGGTCTGCAGTCAC-----------AGTTCC-------GGAAAC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30260835 68 + 173848474 CTTCAA--CACATCCTCTTCCCTCG-----GTTTTTCTGATCCTGACCTGGGTCTGCAGTCAC-----------AGTTCC-------GGAAAC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6063223 68 +   6154872 CTTCAA--CACATCCTCTTCCCTCG-----GTTTTTCTGATCCTGACCTGGGTCTGCAGTCAC-----------AGTTCT-------GGACAC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74738582 68 + 122973662 TTTCAA--CACATCCTCTTACCTAG-----GGTATCCTGATCCTGACCTGGGTCTGCAGTCAC-----------AGTTCT-------GGAAAC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30500495 68 + 172585720 CTTCAA--CACACCCTCTTCCCTCA-----GTTTTCCTGATCCTGACCTGGGTCTGCAGTCAC-----------AGTTCT-------GGAAAC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   120208 68 +    231697 CTTCAA--CACATCCTCTTCCCTCA-----GTTTTCCTGATCCTGACCTGGGTCTGCAGTCAC-----------AGTTCT-------GGAAAC
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          16340 68 +   1495729 TTTCAA--CACGTCCTCTTCCCTCG-----GGTTTCCTGATCCTGACCTGGGTCTGCAGTCAC-----------AGTTCT-------GGAAAC
i macNem1.NW_012012100v1       C 0 C 0
s calJac3.chr4                 30146640 84 + 171630274 ----AACCCACGTCTGCTTTCCTCG-----AGTTTCCTGATTCTGCCCTGGGTCTGTAGTCACTATGGCTAGAAACTTTTTTTGGAGGAAAGT
i calJac3.chr4                 C 0 I 27
s saiBol1.JH378364                26324 68 +    187130 ----GACCCACACCTGCTTTCCTTG-----TTTTTCCTGATCCTTCCCTGAGTTTGCAGTCAC---------AAATTTCT-------GGAAAC
i saiBol1.JH378364             C 0 I 25
s otoGar3.GL873550             16915381 60 -  18854210 ----------TCTTTCCTTCCCCTG-----TGATTTCTGATCCTGCCCTGGGTCTTCAATCAC-----------AGTTCT-------GGAAAC
i otoGar3.GL873550             C 0 I 25
s canFam3.chr12                  935742 65 +  72498081 ----------TGACCCCTCACCTCATGGCTTGTCTCCTGACCCTGACCTGGGCGGTCAGTCAG-----------AATTCT-------GCAGAC
i canFam3.chr12                C 0 I 25
e aotNan1.NW_018496904v1          99492 51710 -    383796 I
e cebCap1.NW_016107755v1         360422 207 -   1771730 I
e colAng1.NW_012115566v1        2823518 207 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=401552.000000
s hg38.chr6_GL000254v2_alt      1064600 75 +   4827813 TCCTCTAGGATCTCATG-CCCTGCCTCCTCCCTGGCCTCTCACAGTTTGTTTTCTTTCCACAGATGGAAAAGGAGG
s panTro5.chr6                 30030254 75 + 175400573 TCCTCTAGGATCTCATG-CCCTGCCTCCTCCCTGGCCTCTCACAGTTTGTTTTCTTTCCACAGATGGAAAAGGAGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30260903 75 + 173848474 TCCTCTAGGATCTCATG-CCCTGCCTCCTCCCTGGCCTCTCACAGTTTGTTTTCTTTCCACAGATGGAAAAGGAGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6063291 75 +   6154872 TCCTCTAGGATCTCATG-CCCTGCCTCCTCCCTGGCCTCTCACAGTTTGTTTTCTTTCCACAGATGGAAAAGGAGG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74738650 76 + 122973662 TCCTCTGGGATCTCAGGACCCTGCTTCCTCCCTGACCTCTCACAGTTTATTTTCTTTCCACGGATGGAAAAGGAGG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30500563 75 + 172585720 TTCTCTGGGATCTCACAGCCCTGCCTCCTCCCTGGCCTCTCACAGTTTGTTTTCTTTCCACAGATGGAAAAGGA-G
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   120276 75 +    231697 TTCTCTGGGATCTCACGGCCCTGCCTCCTCCCTGGCCTCTCACAGTTTGTTTTCTTTCCACAGATGGAAAAGGA-G
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          16408 76 +   1495729 TCCTCTGGGATCTCATGGCCCTGCCTCCTCCCTGGCCTCTCACAGTTTGTTTTCTTTCCACAGATGGAAAAGGAGG
i macNem1.NW_012012100v1       C 0 C 0
s calJac3.chr4                 30146751 76 + 171630274 TCCTCTAAGATCTCATGGCCCTGCCTCTTCCCTGTCCCCTCACAGGACATTTTCTTCCCACAGCTGGAAAAAGAGG
i calJac3.chr4                 I 27 C 0
s saiBol1.JH378364                26417 76 +    187130 TCCTCTAGAACCTCATGGCCCTGCCACCTTTCTGACCCCTCACAGGATGTTTTCTTCCCACAGATAAAAAAGGAGG
i saiBol1.JH378364             I 25 C 0
s aotNan1.NW_018496904v1         151202 76 -    383796 TCCTCTAGGACCTCATGGCCCTGCCACCATTCTGGCCTCTCACAGAATATTTTCTTCCCACAGATAGAAAAGGAGG
i aotNan1.NW_018496904v1       I 51710 I 37
s otoGar3.GL873550             16915466 76 -  18854210 TCCTCTAGGACTTCATGGTCTTGTCTGCTGCCTGGTCTCTTATGGGGAATTTTCTTCCCATAGGTGGAAAAGGAGG
i otoGar3.GL873550             I 25 C 0
s canFam3.chr12                  935832 76 +  72498081 TCCTCGAGGATCTCCTGGCCCAGCCCTGTGCCCGGCCTCTCACATGATGTTTTCTTCCCACAGGAGGAAAAGGACC
i canFam3.chr12                I 25 C 0
e cebCap1.NW_016107755v1         360422 207 -   1771730 I
e colAng1.NW_012115566v1        2823518 207 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=131629.000000
s hg38.chr6_GL000254v2_alt      1064675 45 +   4827813 CAGTTATGCTCAGGCTTCATGTAAGTGTGGTAGGGGTGGGAAGAG
s panTro5.chr6                 30030329 45 + 175400573 CAGCTATGCTCAGGCTTCATGTAAGTGTGGTAGGGGTGGGAAGAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30260978 45 + 173848474 CAGCTATGCTCAGGCTTCATGTAAGTGTGGTAGGGGTGGGAAGAG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6063366 45 +   6154872 CAGCTATGCTCAGGCTTCATGCAAGTGTGGTAGGGGTGGGAAGAG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74738726 44 + 122973662 CAGCTATGCTCAGGCTACATGTAAGTGTGGCAGGGGTGGG-AGAG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30500638 44 + 172585720 CAGCCGTGCTCAGGCTTCATGTAAGTGTGGTAGGGGTGGG-AGAG
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   120351 44 +    231697 CAGCCGTGCTCAGGCTTCATGTAAGTGTGGTAGGGGTGGG-AGAG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          16484 44 +   1495729 CAGCCGTGCTCAGGCTTCATGTAAGTGTGGTAGGGGTGGG-AGAG
i macNem1.NW_012012100v1       C 0 C 0
s calJac3.chr4                 30146827 27 + 171630274 GAGCTACTCTCAGGCTGCGTGTACGTG------------------
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                26493 37 +    187130 AAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGC--------
i saiBol1.JH378364             C 0 C 0
s otoGar3.GL873550             16915542 42 -  18854210 GAGCTACACTCAGGCTGCAAGTAAGTATG---GGGGTGTGTTTGG
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  935908 36 +  72498081 AGGCTACTCTCATGCTGCACGTGAGTATGTAGGGAG---------
i canFam3.chr12                C 0 C 0
e aotNan1.NW_018496904v1         151278 37 -    383796 I
e cebCap1.NW_016107755v1         360422 207 -   1771730 I
e colAng1.NW_012115566v1        2823518 207 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=534007.000000
s hg38.chr6_GL000254v2_alt      1064720 90 +   4827813 TGATCCCTGAGATCCTTGGGATAGTGTAGACAGGAGCCCATGGGGGAGCTCAGCCACCCCAAAATTCCTCCTTTAGTCACATCACCTGTG
s panTro5.chr6                 30030374 90 + 175400573 TGATCCCTGAGATCCTTGGGATAGTGTAGACAGGAGCCCATGGGGGAGCTCAGCCACCCCAAAATTCCTCCTTTAGTCACATCACCTGTG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30261023 90 + 173848474 TGATCCCTGAGATCCTTGGGATAGTGTAGACAGGAGCCCATGGGGGAGCTCAGCCACCCCAAAATTCCTCCTTTAGTCACATCACCTGTG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6063411 90 +   6154872 TGATCCCTGAGATCCTTGGGATAATGTAGACAGGAGCCCATGGGGGAGCTCAGCCACCCCAAAATTCCTCCTTTAGTCACATCACCTGTG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74738770 90 + 122973662 TGAATCCTGAGATCCTTGGGATAGCATAGACAGGAGCCCATGGGGGAGCTCACCCACCCCACAATTCCTCCTTTAGTCACATCACCTGTG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30500682 88 + 172585720 TGATCCCTGAGATCCTTGGGATAGTGTACACAGAAGCCCAT-GGGGACCTCA-CCACCCCACAATTCCTCCTTTAGTCACATCACCTGTG
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   120395 89 +    231697 TGATCCCTGAGATCCTTGGGATAGTGTACACAGAAGCCCATGGGGGAGCTCA-CCACCCCACAATTCCTCCTTTAGTCACATCACCTGTG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          16528 90 +   1495729 TGATGCCTGAGATCCTTGGGATAGTGTAGACAAGAGCCAATGGGGGAGCTCACCCACCCCACAATTCCTCCTTTAGTCACATCACCTGTG
i macNem1.NW_012012100v1       C 0 C 0
s colAng1.NW_012115566v1        2823725 90 -   3067355 TGATCCCTGAGATCGTTGGGATATTGTGGTCGGGGGCCCATGGGGGAGCTCAGCCACCTCACAGTCCCTCCTCTAGCCACATCTCCAGAG
i colAng1.NW_012115566v1       I 207 C 0
s calJac3.chr4                 30146854 64 + 171630274 ----------------------ATGGGGGTGGGGG---TGTGGAGGAGCTCACCCACCCCAAAATTCCTCCTGTC-CCACATCTCCTGCG
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                26530 90 +    187130 TGATCCCTGAGATCGTTGGGATATTGTGGTCGGGAGCCCATAGGGGAACTCACCCAGCTCGCAATTCCTCCTCTAGTGGCGTTTCCTGTA
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         360629 90 -   1771730 TGATCCCTGAGATCATTGGGATATTGTGGTCGGGAGCCCATGGGGGAGCTCACCAAGTCCACAATTCCTCCTCTAGCGGCGTTTCCTGTA
i cebCap1.NW_016107755v1       I 207 C 0
s aotNan1.NW_018496904v1         151315 90 -    383796 TGATCCCTGAGATCGTTGGGATATTGTGGTCGGGATCCCATGGGGGAGCTCACCCAGCCCGCAGTTCCTCCTATAGCTGCATCTCCTGTG
i aotNan1.NW_018496904v1       I 37 T 51641
s otoGar3.GL873550             16915584 87 -  18854210 TGATCTGTGAGGCCTCTGGAACA--GTAGACAGGAGCCCATGGTGGAGTTTC-CAGCCACATATTTCCTCCTTTAGCCACATTTTCTGTG
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  935944 85 +  72498081 TGATCCCTGAGACCCCGGGGG-AGTGTAGACAGGACCCCAT-GGGGAGGTCACC---CCCACAGCTGCTCCTTTAGTCTCACCTCCTGTG
i canFam3.chr12                C 0 C 0
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=456355.000000
s hg38.chr6_GL000254v2_alt      1064810 69 +   4827813 GGCTCTGACCAGATTTTGTTTTTGTTCCACCCCAAACAGGAACAGTACCCAGGGCTCTGATGTGTCTCT
s panTro5.chr6                 30030464 69 + 175400573 GGCTCTGACCAGATTTTGTTTTTGTTCCACCCCAAACAGGAACAGTACCCAGGGCTCTGATGTGTCTCT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30261113 69 + 173848474 GGCTCTGACCAGATTTTGTTTTTGTTCCACCCCAAACAGGAACAGTACCCAGGGCTCTGATGTGTCTCT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6063501 69 +   6154872 GGCTCTGACCAGATTTTGTTTTTGTTCCACCCCAAACAGGAACAGTACCTGGGGCTCTGATGTGTCTCT
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74738860 67 + 122973662 GGCTCTGACCAGATTTTGTTTTT-TTCCACCCCAAACAGGGAAAGTACC-AGGGCTCTGATGTGTCTCC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30500770 69 + 172585720 AGCTCTGAACAGATTTTGGTTTTGTTCCACCCCGAACAGGAACTGTGCCCAGGGCTCTGATGTGTGTCT
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   120484 69 +    231697 AGCTCTGAACAGATTTTGGTTTTGTTCCACCCCGAACAGGAACTGTGCCCAGGGCTCTGATGTGTGTCT
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          16618 69 +   1495729 CGCTCTGAACAGATTTTGTTTCTGTTGCACCCCAAACAGGGACAGTACCCAGGGCTCTGATGTGTCTCT
i macNem1.NW_012012100v1       C 0 C 0
s colAng1.NW_012115566v1        2823815 69 -   3067355 GGATCTGACCAGGTCCTGTTTTTGTTCTACCCCAGGAAGTGACAGTACCCAGGGCTCTGATGTGTCTCT
i colAng1.NW_012115566v1       C 0 C 0
s calJac3.chr4                 30146918 52 + 171630274 GGCTCTGA-CAGGT----------------CCTAGGCAGCGACAGTGCCCAGGACTCTGATGTGTCTCT
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                26620 69 +    187130 GGCTCTGACCAGGTTCTGTTTTTGTCTTACCCCAGGCAGCGACAGTGCCCAGGACTCTGATGTGTCTCT
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         360719 69 -   1771730 GGCTCTGACCAGGTTCTGTTTTTGTTCTACCCCAGGCAGCGACAGTGCCCAGGGCTCTGATGTGTCTCT
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1          99764 69 -    383796 GGCTCTGACCAGGTTCTGTTTTTGTTCTACCTCAGGCAGTGACAGTCCCCAGGGCTCTGATGTGTCTCT
i aotNan1.NW_018496904v1       T 51641 C 0
s otoGar3.GL873550             16915671 68 -  18854210 GGCTGGGACCAGGTCCTG-TTTTGTTCAACCACAGGCAGTGACACTGCCCAGGGATCCGATGGGTCTtt
i otoGar3.GL873550             C 0 I 218
s canFam3.chr12                  936029 67 +  72498081 AGCTCTGACCACATCCTG--TTTATTCTCCTCTAGGCGATGACAGTGCCCAGGGCTCTGATGTGTCTCT
i canFam3.chr12                C 0 C 0
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=113597.000000
s hg38.chr6_GL000254v2_alt      1064879 17 +   4827813 CAAGGCTTGTAAAAGTG
s panTro5.chr6                 30030533 17 + 175400573 CAAGGCTTGTAAAAGTG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30261182 17 + 173848474 CAAGGCTTGTAAAAGTG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6063570 17 +   6154872 CAAGGCTTGTAAAAGTG
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74738927 17 + 122973662 CAAGGCTTGTAAAAGTG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30500839 17 + 172585720 CAAGGCTTATAAAAGTG
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   120553 17 +    231697 CAAGGCTTATAAAAGTG
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          16687 17 +   1495729 CAAGGCTTGTAAAAGTG
i macNem1.NW_012012100v1       C 0 C 0
s colAng1.NW_012115566v1        2823884 17 -   3067355 CACTGCTTGTAAAGGTG
i colAng1.NW_012115566v1       C 0 C 0
s calJac3.chr4                 30146970 17 + 171630274 CACGGCTTGTAAAGGTG
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                26689 17 +    187130 CACGGCTTGTAAAGGTG
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         360788 17 -   1771730 CACGGCTTGTAAAGGTG
i cebCap1.NW_016107755v1       C 0 I 298
s aotNan1.NW_018496904v1          99833 17 -    383796 CACGGCTTCTAAAGGTG
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16915957 17 -  18854210 caggggatttgaacccg
i otoGar3.GL873550             I 218 I 1
s canFam3.chr12                  936096 17 +  72498081 GACAGCTCCTAGAGGTG
i canFam3.chr12                C 0 C 0
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=7098.000000
s hg38.chr6_GL000254v2_alt      1064896 1 +   4827813 A
s panTro5.chr6                 30030550 1 + 175400573 A
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30261199 1 + 173848474 A
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6063587 1 +   6154872 A
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74738944 1 + 122973662 A
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30500856 1 + 172585720 A
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   120570 1 +    231697 A
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          16704 1 +   1495729 A
i macNem1.NW_012012100v1       C 0 C 0
s colAng1.NW_012115566v1        2823901 1 -   3067355 A
i colAng1.NW_012115566v1       C 0 C 0
s calJac3.chr4                 30146987 1 + 171630274 A
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                26706 1 +    187130 A
i saiBol1.JH378364             C 0 C 0
s aotNan1.NW_018496904v1          99850 1 -    383796 A
i aotNan1.NW_018496904v1       C 0 I 300
s canFam3.chr12                  936113 1 +  72498081 A
i canFam3.chr12                C 0 C 0
e otoGar3.GL873550             16915974 1 -  18854210 I
e cebCap1.NW_016107755v1         360805 298 -   1771730 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=57767.000000
s hg38.chr6_GL000254v2_alt      1064897 17 +   4827813 CACCTTAGAGG---------------------GC-------CTGA
s panTro5.chr6                 30030551 17 + 175400573 CACCTTAGAGG---------------------GC-------CTGA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30261200 17 + 173848474 CACCTTAGAGG---------------------GC-------CTGA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6063588 17 +   6154872 CACCTTAGAGG---------------------GT-------CTGA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74738945 17 + 122973662 CACCTTAGAGG---------------------GC-------CTGA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30500857 17 + 172585720 TACCTTAGAGG---------------------GC-------CTGA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   120571 17 +    231697 TACCTTAGAGG---------------------GC-------CTGA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          16705 17 +   1495729 CATATTAGAGG---------------------AC-------CTGA
i macNem1.NW_012012100v1       C 0 C 0
s colAng1.NW_012115566v1        2823902 17 -   3067355 GACCCTGGAGG---------------------GC-------CTGA
i colAng1.NW_012115566v1       C 0 I 155
s calJac3.chr4                 30146988 16 + 171630274 -GATTTTGAGG---------------------GT-------CTGA
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                26707 23 +    187130 -GACCCTGGGG---------------------GTGGGTGGGCTGA
i saiBol1.JH378364             C 0 C 0
s otoGar3.GL873550             16915975 38 -  18854210 caccttaggtgtatgtggctggcgcctcagccgc-------ttga
i otoGar3.GL873550             I 1 I 59
s canFam3.chr12                  936114 17 +  72498081 GACCCCAGAGA---------------------CC-------CTGA
i canFam3.chr12                C 0 C 0
e aotNan1.NW_018496904v1          99851 300 -    383796 I
e cebCap1.NW_016107755v1         360805 298 -   1771730 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=69573.000000
s hg38.chr6_GL000254v2_alt      1064914 30 +   4827813 AGTGAAAGAG-----GAGTT-GGGCAGAGGGGACAC
s panTro5.chr6                 30030568 30 + 175400573 AGTGAAAGAG-----GAGTT-GGGCAGAGGGGACAC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30261217 30 + 173848474 AGTGAAAGAG-----GAGTT-GGGCAGAGGGGACAC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6063605 30 +   6154872 AGTGAAAGAG-----GAGTT-GGGCAGAGGGGACAC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74738962 31 + 122973662 AGTGAATGAG-----GAGTTGGGGCAGAGGGGATAC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30500874 31 + 172585720 AGTGAAGGAG-----GAGTTGGGGCAGATGGGACAC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   120588 31 +    231697 AGTGAAGGAG-----GAGTTGGGGCAGATGGGACAC
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          16722 31 +   1495729 AGTGAAAGAG-----GAGTTGGGGCAGAGGGGATAC
i macNem1.NW_012012100v1       C 0 C 0
s calJac3.chr4                 30147004 30 + 171630274 AGTGGGTACG-----GGGTG-GGGCAGCAGGGAAAG
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                26730 33 +    187130 TGTGTGTGGGTTGTTGGGGG-GAACAGTGGGCAC--
i saiBol1.JH378364             C 0 I 61656
s otoGar3.GL873550             16916072 34 -  18854210 TGTGTATAAG--GGTGAGGTGGAGCAGAGGGGACAC
i otoGar3.GL873550             I 59 C 0
s canFam3.chr12                  936131 16 +  72498081 AGTGG--GGA-----GGGTT-GGG------------
i canFam3.chr12                C 0 C 0
e aotNan1.NW_018496904v1          99851 300 -    383796 I
e cebCap1.NW_016107755v1         360805 298 -   1771730 I
e colAng1.NW_012115566v1        2823919 155 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=305363.000000
s hg38.chr6_GL000254v2_alt      1064944 114 +   4827813 AACTAAGCTCTGGAGATTCTTTGATTTGGAATTTTTCAAGGTGTGGTGGGCTGTTC--AGTGTCACAACTTACTGTGACTGACCTGGATTAGTTTATG-----ACTATGTT-TTTTCTA-----AGA
s panTro5.chr6                 30030598 114 + 175400573 AACTAGGCTCTGGAGATTCTTTGATTTGGAATTTTTCAAGTTGTGGTGGGCTGTTC--AGTGTCACCACTTACTGTGACTGACCTGGATTAGTTCATG-----ACTATGTT-TTTTCTA-----AGA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30261247 113 + 173848474 AACTAGGCTCTGGAGATTCTTTGATTTGGAATTTTTCAAGTTGTGGTGGGCTGTTC--AGTGTCACCACTTACTGTGACTGACCTGGATTAGTTCATG-----ACTATG-T-TTTTCTA-----AGA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6063635 114 +   6154872 AACTAGGCTCTGGAGATTCTTTGATTTGGAATTTTTCAAGTTGTGGTGGGCTGTTC--AGTGTCACCACTTACTGTGACTGACCTGGATTAGTTCATG-----ACTATGTT-TTTTCTA-----AGA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74738993 112 + 122973662 AACTAGAATTTGGAG--TCTTAGATTTGCTATTCTTGAGGGTGTGGTGGGCTGTTC--AGTGTCACCACTTACTATGACTGACCTGAATTTGTTCATG-----ACTATTTT-TTTTCTA-----AGA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30500905 120 + 172585720 AACTAGGCTCTGGAGATTCTTTGATTTGGAATATTTCAGTGTGTGTTGGGCTGTTC--AGTGTCACCACTTACCATGACTGACTTGAATTTGTTTATGATACTACTTTTTTCTTTTCTA-----AGA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   120619 120 +    231697 AACTAGGCTCTGGAGATTCTTTGATTTGGAATATTTCAGTGTGTGTTGGGCTGTTC--AGTGTCACCACTTACCATGGCTGACTTGAATTTGTTCATGATACTACTTTTTTCTTTTCTA-----AGA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          16753 113 +   1495729 AGTTAGAATTTGGAG--TCTTTGATTTGCTATTCTTGAGGGTGTGGTGGGCTGTTC--AGTGTCACCATTTACTATGACTGACCTAAATTTGTTCATG-----ACTTTTTTTTTTTCTA-----AGG
i macNem1.NW_012012100v1       C 0 C 0
s calJac3.chr4                 30147034 121 + 171630274 GACTGTGTAGTGAGGATTCTTTTATTGGGACATTTCTAGTGTGTGGTGGGCAGTTCAGAGTGTCATCACTTACCATGACTGACCTGAATTTGACCACA-----CCTATTGT-TTTCATAGCCTGAGA
i calJac3.chr4                 C 0 I 3
s saiBol1.JH378364                88419 106 +    187130 AGCTGTGTTATGGGGTTTCTTTAACTTGGATGTATTGAGCTGGTGATGGGTTGTTTAAAGTG-------------TGACTGATATAAATTTGTTAATG-----AATAT--T-TTTTGTAGTGTGAGA
i saiBol1.JH378364             I 61656 I 3
s otoGar3.GL873550             16916106 104 -  18854210 AGCTGAGCTGTTGGGATTCTTTGA-TGGGACATTCTGAGTGTGTGGTGGGCTGTTCAGAGTGTCACCACTTAT----AGTGATCTGAATTTGTTCCTC-----ATT----T-TTTTCTA--------
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  936147  96 +  72498081 ------GCCTTGGGGA---CCTGA-----------TGAGTGCGAGGGGGACTGTTGAGAATGTCAGCACTTA-TGTGACTGACCTCAGTTTGTACTTG-----ATTGTTTTTCAGTGTG-----AGA
i canFam3.chr12                C 0 I 4
e aotNan1.NW_018496904v1          99851 300 -    383796 I
e cebCap1.NW_016107755v1         360805 298 -   1771730 I
e colAng1.NW_012115566v1        2823919 155 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=253395.000000
s hg38.chr6_GL000254v2_alt      1065058 53 +   4827813 TTGCCTTGTGAGGGACTGA--GATGCAAGATT---TGTTCATGCCTCCTCTTTGTGAC
s panTro5.chr6                 30030712 53 + 175400573 TTGCCTTGTGAGGGACTGA--GATGCAAGATT---TGTTCATGCCTCCTCTTTGTGAC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30261360 53 + 173848474 TTGCCTTGTGAGGGACTGA--GATGCAAGATT---TGTTCATGCCTCCTCTTTGTGAC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6063749 53 +   6154872 TTGCCTTGTGAGGGACTGA--GATGCAAGATT---TGTTCATGCCTCCTCTTTGTGAC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74739105 52 + 122973662 CTGCCTTGTGAGGGACTGA--AATGCAAGATT---TGTTCATGCCTCC-CTTTGTGAC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30501025 53 + 172585720 CTTCCTTGTGAGGGACTGA--GATGCAAGATT---TCTTCATAGCTCCTCTTTGAGAC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   120739 53 +    231697 CTTCCTTGTGAGGGACTGA--GATGCAAGATT---TCTTCATAGCTCCTCTTTGAGAC
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          16866 53 +   1495729 CTGCCTTGTGAGGGACTGA--GATGCAAGATT---TGTTCATGCCTCCCCTTTGTGAC
i macNem1.NW_012012100v1       C 0 C 0
s colAng1.NW_012115566v1        2824074 53 -   3067355 TTGCCATGTGTGGGACTGA--GAGGCAAGATT---TGCTCATGCCTCCCCTTTGTGAC
i colAng1.NW_012115566v1       I 155 I 77
s calJac3.chr4                 30147158 53 + 171630274 CTGCCTTGTGTGGGACTGA--GATGCGGGATT---TCTTCACGCCTCCCCTTTGTGAC
i calJac3.chr4                 I 3 C 0
s saiBol1.JH378364                88528 53 +    187130 CTGCCTTGTGTGGGACTGA--GAGGCAAGATT---TACCCACACCTTCCATTTGTGAC
i saiBol1.JH378364             I 3 C 0
s otoGar3.GL873550             16916210 52 -  18854210 -TAGCCTGAGAAAG-CTGA--GTTGT--GGCTGAATGTTCATGCCTCCCCTTTGTGAC
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                  936247 53 +  72498081 CTGCCCTGTG-GGGACTGAGCGATGCAAGATG---TGTTCACATCTCA-CGTGATGAC
i canFam3.chr12                I 4 C 0
e aotNan1.NW_018496904v1          99851 300 -    383796 I
e cebCap1.NW_016107755v1         360805 298 -   1771730 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=248386.000000
s hg38.chr6_GL000254v2_alt      1065111 73 +   4827813 ATTAAGAGCCTCTGGCTTCTCTTTCTGCCAAAGGGTCTGAATGTGTCTATGTCTACAGTAAC---AGGTAAGAAAT--
s panTro5.chr6                 30030765 73 + 175400573 ATTAAGGGCCTCTGGCTTCTCTTTCTGCCAAAGCGTCTGAATGTGTCTATGTCTACGGTAAC---AGGTAAGAAAT--
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30261413 73 + 173848474 ATTAAGGGCCTCTGGCTTCTCTTTCTGCCAAAGCGTCTGAATGTGTCTATGTCTACGGTAAC---AGGTAAGAAAT--
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6063802 73 +   6154872 ATTAAGGGCCTCTGGCTTCTCTTTCTGCCAAAGCGTCTGAATGTGTCTATGTCTACGGTAAC---AGGTAAGAAAT--
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74739157 73 + 122973662 TTCAAGGGCCTCTGGCTTCTCTTTCTGCCAAGGCATCTGAATGTGTCTATATCCCTGGTATC---ATGTGAGAAGT--
i nomLeu3.chr1a                C 0 I 1
s rheMac8.chr4                 30501078 73 + 172585720 TTCAAGGGCCTCTGGCTTCTTTTTCTGCCAAGCAGTCTGAATGTGACTATGTCCCTGGTAAC---AGGTGAGAAGT--
i rheMac8.chr4                 C 0 I 1
s macFas5.chr4_KE145577_random   120792 73 +    231697 TTCAAGGGCCTCTGGCTTCTTTTTCTGCCAAGCAGTCTGAATGTGACTATGTCCCTGGTAAC---AGGTGAGAAGT--
i macFas5.chr4_KE145577_random C 0 I 1
s macNem1.NW_012012100v1          16919 73 +   1495729 TTCAAGAGTCTCTGGCTTCTCTTTCTGCCAAGGCATCTGAATGTGTCTACATCCTTGGTATC---ATGTGAGAAGA--
i macNem1.NW_012012100v1       C 0 I 1
s calJac3.chr4                 30147211 76 + 171630274 TTCAAGAGCCTCTGGCGTCTCTTTCTACTAAGGCATCTGAATGTGTCTGTGTCCCTGTTAGCATAATGTGAGGAGG--
i calJac3.chr4                 C 0 I 2
s saiBol1.JH378364                88581 75 +    187130 TTCTAGAACC-CTGACTTCTCTTACTGCAAAGGCGTCTGAATGTGTCTGTGTCCCTAGAGGCATAATGTGAGGAGG--
i saiBol1.JH378364             C 0 I 2
s otoGar3.GL873550             16916262 76 -  18854210 TTCAAGAGCCTCTGACTTCTCTTTCTGCAAATGCTTCTGAACAACTCTGTATCCCTGTTTGCCTAATGTGAGGAGG--
i otoGar3.GL873550             C 0 I 1
s canFam3.chr12                  936300 66 +  72498081 ATCAACAACC-CTGGCTTGTCT--CTGCAAACA---------GTGCCTGTGTCCCTAGGAGCATAATGTGAGGAGGTG
i canFam3.chr12                C 0 C 0
e aotNan1.NW_018496904v1          99851 300 -    383796 I
e cebCap1.NW_016107755v1         360805 298 -   1771730 I
e colAng1.NW_012115566v1        2824127 77 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=243639.000000
s hg38.chr6_GL000254v2_alt      1065184 34 +   4827813 GGGAGACCAGCCCATCCTCATGTCCACCATGACC
s panTro5.chr6                 30030838 34 + 175400573 GGGAGACCAGCCCATCCTCATGTCCACCATGACC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30261486 34 + 173848474 GGGAGACCAGCCCATCCTCATGTCCACCATGACC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6063875 34 +   6154872 GGGAGACCAGCCCATCCTCATGTCCACCATGACC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74739231 34 + 122973662 GGGAGACCAGCCCACCCTCATGTCCACCATGACC
i nomLeu3.chr1a                I 1 C 0
s rheMac8.chr4                 30501152 34 + 172585720 GGGATACCAGCCAACCCTCATATCCACCATGACC
i rheMac8.chr4                 I 1 C 0
s macFas5.chr4_KE145577_random   120866 34 +    231697 GGGATACCAGCCAACCCTCATATCCACCATGACC
i macFas5.chr4_KE145577_random I 1 C 0
s macNem1.NW_012012100v1          16993 34 +   1495729 GGGAGACCAGCCTACCCTCATGTCCACCATGACC
i macNem1.NW_012012100v1       I 1 C 0
s colAng1.NW_012115566v1        2824204 34 -   3067355 GGGAGACCAGCCTACCCCCATGTCCACCATGACC
i colAng1.NW_012115566v1       I 77 C 0
s calJac3.chr4                 30147289 32 + 171630274 GAGAGA-CAGCCCA-TCCCATGTCCACCGTGACC
i calJac3.chr4                 I 2 C 0
s saiBol1.JH378364                88658 34 +    187130 GGGAGACCAGCCCAGCCCCGTGTCCACCATGACC
i saiBol1.JH378364             I 2 C 0
s cebCap1.NW_016107755v1         361103 34 -   1771730 GGGAGACCAGCCCAGCCCCGTGTCCACCATGACC
i cebCap1.NW_016107755v1       I 298 C 0
s aotNan1.NW_018496904v1         100151 34 -    383796 GGGAGACCAGCCCAGCCCTGTGTCCACCATGACC
i aotNan1.NW_018496904v1       I 300 C 0
s otoGar3.GL873550             16916339 31 -  18854210 GGGAAGTCTACC---TCCCATGTCCACGGTGACC
i otoGar3.GL873550             I 1 C 0
s canFam3.chr12                  936366 31 +  72498081 GGGAGATTGGCCCACCC---TGCCCACCATGACC
i canFam3.chr12                C 0 I 42980
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=17585.000000
s hg38.chr6_GL000254v2_alt      1065218 2 +   4827813 CC
s panTro5.chr6                 30030872 2 + 175400573 TC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30261520 2 + 173848474 TC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6063909 2 +   6154872 CC
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74739265 2 + 122973662 CC
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30501186 2 + 172585720 CC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   120900 2 +    231697 CC
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          17027 2 +   1495729 CC
i macNem1.NW_012012100v1       C 0 C 0
s colAng1.NW_012115566v1        2824238 2 -   3067355 CC
i colAng1.NW_012115566v1       C 0 I 15917
s calJac3.chr4                 30147321 2 + 171630274 CC
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                88692 2 +    187130 CC
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         361137 2 -   1771730 CC
i cebCap1.NW_016107755v1       C 0 I 67469
s aotNan1.NW_018496904v1         100185 2 -    383796 CC
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16916370 2 -  18854210 CC
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                71485894 2 -  72498081 CC
i canFam3.chr12                n 42980 C 0
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=5634.000000
s hg38.chr6_GL000254v2_alt      1065220 1 +   4827813 t
s panTro5.chr6                 30030874 1 + 175400573 t
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30261522 1 + 173848474 t
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6063911 1 +   6154872 t
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74739267 1 + 122973662 t
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30501188 1 + 172585720 t
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   120902 1 +    231697 t
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          17029 1 +   1495729 t
i macNem1.NW_012012100v1       C 0 C 0
s calJac3.chr4                 30147323 1 + 171630274 T
i calJac3.chr4                 C 0 C 0
s saiBol1.JH378364                88694 1 +    187130 T
i saiBol1.JH378364             C 0 I 26761
s aotNan1.NW_018496904v1         100187 1 -    383796 T
i aotNan1.NW_018496904v1       C 0 I 98942
s otoGar3.GL873550             16916372 1 -  18854210 T
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                71485896 1 -  72498081 C
i canFam3.chr12                C 0 C 0
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e colAng1.NW_012115566v1        2824240 15917 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=59474.000000
s hg38.chr6_GL000254v2_alt      1065221 22 +   4827813 gatattgtttggatctgtgtcc
s panTro5.chr6                 30030875 22 + 175400573 gatattgtttggatctgtgtcc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30261523 22 + 173848474 gatattgtttggatctgtgtcc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6063912 22 +   6154872 gatattgtttggatctgtgtcc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74739268 22 + 122973662 gatatcatttgggtctgtgtcc
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30501189 22 + 172585720 gatatcgtttgaatctatgtcc
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   120903 22 +    231697 gatatcatttgaatctatgtcc
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          17030 22 +   1495729 gatattgtttggatctgtgtcc
i macNem1.NW_012012100v1       C 0 C 0
s calJac3.chr4                 30147324 22 + 171630274 GTCCCCATGCTGACCTGTGTTC
i calJac3.chr4                 C 0 C 0
s otoGar3.GL873550             16916373 22 -  18854210 TTTCCCACACTGACTTGTGTCC
i otoGar3.GL873550             C 0 I 6066
s canFam3.chr12                71485897 15 -  72498081 GACA-------GACCTGTGTTC
i canFam3.chr12                C 0 I 43737
e saiBol1.JH378364                88695 26761 +    187130 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e colAng1.NW_012115566v1        2824240 15917 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=32676.000000
s hg38.chr6_GL000254v2_alt      1065243 11 +   4827813 ccacccaaatc
s panTro5.chr6                 30030897 11 + 175400573 ccacccaaatc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30261545 11 + 173848474 ccacccaaatc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6063934 11 +   6154872 ccacccaaatc
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74739290 11 + 122973662 ccacccaaatc
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30501211 11 + 172585720 ccacccaaatc
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   120925 11 +    231697 ccacccaaatc
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          17052 11 +   1495729 ccacccagatc
i macNem1.NW_012012100v1       C 0 C 0
s calJac3.chr4                 30147346 11 + 171630274 CCTCCCCAGTC
i calJac3.chr4                 C 0 I 50966
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e colAng1.NW_012115566v1        2824240 15917 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=690462.000000
s hg38.chr6_GL000254v2_alt      1065254 313 +   4827813 tcatgttcaattgtaatccctaattttggaggtggtgtctggtggcaggtgatcggctcatgaggatggatccttcatgaacggtttagaaccatctctttggtgctattcttgtgataattctcataagatctggtgtttaaaaatctgtgtcacctccctgctctctctccctcctgctccaggcatgtaagtaatgtctgcttccccttagccttccagcataatcgaaagttccctgaggccctctcataagatgagcagatgccagaatcatactttctgtatagcctgcagaaccatgacccaattt
s panTro5.chr6                 30030908 313 + 175400573 tcatgttcaattgtaatccctaattttggaggtggtgcctggtggcaggtgatcggctcatgaggatggatccttcatgaacggtttagaaccatctctttggtgctattcttgtgataattctcacaagatctggtgtttaaaaatctgtgtcacctccctgctctctctccctcctgctccaggcatgtaagtaatatctgcttccccttaaccttccagcataattgaaagttccctgaggccctctcataagataagcagatgccagaatcatactttctgtatagcctgcagaaccatgacccaattt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30261556 313 + 173848474 tcatgttcaattgtaatccctaattttggaggtggtgcctggtggcaggtgatcggctcatgaggatggatccttcatgaacggtttagaaccatctctttggtgctattcttgtgataattctcacaagatctggtgtttaaaaatctgtgtcacctccctgctctctctccctcctgctccaggcatgtaagtaatatctgcttccccttaaccttccagcataattgaaagttccctgaggccctctcataagataagcagatgccagaatcatactttctgtatagcctgcagaaccatgacccaattt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6063945 313 +   6154872 tcatgttcaattgtaatccctaattttggaggtggtgcctggtggcaggtgattggctcatgaggatggatccttcatgaactgtttagaaccatctctttggtgctattcttgtgataattctcacaagatctggtgtttaaaaatctatgtcacctccctgctctctctccctcctgctccaggcatgtaagtaatgtctgcttccccttaaccttccagcataattgaaagttccctgaggccctctcataagacaagcagatgacagaatcatactttctgtatagcctgcagaaccatgacccaattt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74739301 311 + 122973662 tcatattcacttgtaatccctaaggttggaggtggcacctcacgg-aggtggttggcccatgaggatggatctttcatgaatggcttagaaccatctctttggtgctgttcttgtgatagttctcacaacatctggtgtttaaaagtgtgtggtacctccctgctctctctccctcctactccaggcttgtaagtcatgcctgcttccccttaaccttccagcatgatcgaaagtttcctggggccctctcataagttgagcaaatgccagaatcatattttc-atacagcctgcagaaccatgagccaattt
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30501222 309 + 172585720 ccatgtccacttgtaatccctaa---tggaggtggcacccggtgggaggtgattggctcatggggatggatcctccatgaatggcttagaaccatctctttggtgctgttcttgtgatagttctcacaagatctggtgtttgaaagtgtgtggcacctccctgttctctctccctcctgctccaggcaagtcagtcatgcctgcttccccttagcctttcagcatgattgaaagttttctgaggccctctcaaaagttgagcagatgccagaatcatactcct-gtatagcctgcagaaccatgagccaattt
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   120936 309 +    231697 ccatgtccacttgtaatccctaa---tggaggtggcacccggtgggaggtgattggctcatggggatggatcctccatgaatggcttagaaccatctctttggtgctgttcttgtgatagttctcacaagatctggtgtctgaaagtgtgtggcacctccctgttctctctccctcctgctccaggcaagtcagtcatgcctgcttccccttagcctttcagcatgattgaaagttttctgaggccctctcaaaagttgagcagatgccagaatcatactcct-gtatagcctgcagaaccatgagccaattt
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          17063 311 +   1495729 tcatgttcacttataatctctaaggttggagttggcacctca-gggaggtgattggctcatgaggatggatccttcatgaatggtttagaaccatctctttggtgctgttcttgtgatagttctcacaagatctggtgtttaaaagtgtgtgccacctccctgctttctttccctcctactccaggcttgtaagtcatacctgcttccccttaaccttccagcatgattgaaaggttcctgaggccctctcataagttgagcagatgccagaatcatactttc-atacagcctgcagaaccgtgagccaattt
i macNem1.NW_012012100v1       C 0 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2824240 15917 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=11844.000000
s hg38.chr6_GL000254v2_alt      1065567 6 +   4827813 aaacct
s panTro5.chr6                 30031221 6 + 175400573 aaacct
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30261869 6 + 173848474 aaacct
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6064258 6 +   6154872 aaacct
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30501531 6 + 172585720 aaacct
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   121245 6 +    231697 aaacct
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          17374 6 +   1495729 aaacct
i macNem1.NW_012012100v1       C 0 N 0
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2824240 15917 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e nomLeu3.chr1a                74739612 0 + 122973662 C

a score=5595.000000
s hg38.chr6_GL000254v2_alt      1065573 4 +   4827813 cttt
s panTro5.chr6                 30031227 4 + 175400573 cttt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30261875 4 + 173848474 cttt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6064264 4 +   6154872 cttt
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30501537 4 + 172585720 cttt
i rheMac8.chr4                 C 0 I 4836
s macFas5.chr4_KE145577_random   121251 4 +    231697 cttt
i macFas5.chr4_KE145577_random C 0 I 4883
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2824240 15917 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e nomLeu3.chr1a                74739612 0 + 122973662 C

a score=514027.000000
s hg38.chr6_GL000254v2_alt      1065577 912 +   4827813 tctGTTTTTGTTTTGTTTTTGTTTTTTGAAGGAAAATTTATATTATTTTAATTATTTTTACATACAGAAAACTCAACAGCATACATTTCACCCAATTTAGTGGCATGTTCTTTACCCTTTGCCTTTTTGAGCTTGGCAATGCAAACCACATACTTGAGACCCAGGACACTGTCTCCCCAGTGATGGCGGATCTCATCGTATCTGTCATTGTAATTGGTCCTGAGAACTCCCACCAGCTTAGCCAAAGCACCTTTGTCTTCCGAGTTAACCTGTGTGAAGGTGACAGTGGTGCAGGTCTTCCTATGGACTAGATGTCCCAGTCTTGCCTTCCCTTTGATAATGCAGTAAGGGACCCCATTTTATGACACAGGACAGGCAAGAAGACAACCAGCTTGATGGGATCTACATCATGTGCTATCACCACCAGCTGAGCTTTCTTGTTCTCCACCAAGGTGGTGATGGTGTTAACTCCTGCTCGAAGGACAGGTGGACTCTTAGTGGGGAATGTCCCCTTTGCCAGCAGCTTTCTTCTTGGCCCGGGCCAACAGCCTCTGCTTCTTCTCTTGGTTTGTCTCTGGTCTGTATTGTGGGCCAGCTTAAGCAGCAGAGTAGCTGTTTGGCTGTCTGGTGCCTGGGTGAACTGGTTAATCTCAGGAGGCACTTTCAGCCACTTATAGAGGATGGTTCTCTGCTGCTGCAACCTGATATAGCAGGGCCATTTCACAAAGTGGGTGAGGTCTCTTTTGGGCTGGATATCCTGTCCAGTGCCAAAATTCTTAGGCCTTTTCTCAAACAAGGGATTTACCACTTTCTTGGCCTCCTGCTTCTTCACGACAGCAGGGGCTGGAGCCACCTTCTTCTCCTTGGCCTTCTTTCCTTTTGGCATCTTGGATGGTGGGAGGAGAAAGAAAG
s panTro5.chr6                 30031231 912 + 175400573 tctGTTTTTGTTTTGTTTTTGTTTTTTGAAGGAAAATTTGTATTATTTTAATTATTTTTACATACAGAAAACTCAACAGTGTACATTTCACCCAATTTAGTGGCATGTTCTTTACCCTTTGCCTTTTTGAGCTTGGCAATGCAAACCACATACTTGAGACCCAGGACACTGTCTCCCCAGTGACGGCGGATCTCATCGTATCTGTCATTGTAATTGGTCCTGAGAACTTCCACCAGCTTAGCCAAAGCACCTTTGTCTTCCGAGTTAACCTGTGTGAAGGTGACAGTGGTGCAGGTCTTCCTATGGACTAGATGTCCCAGTCTTGCCTTCCCTTTGATAATGCAGTAAGGGACCCCATTTTATGACACAGGACAGGCAAGAAGACAACCAGCTTGATGGGATCTACATCATGTGCAATCACCACCAGCTGAGCTTTCTTGTTCTCCACCAAGGTGGTGATGGTGTTAACTCCTGCTCGAAGGACATGTGGTCTCTTAGTGGGGAATGTCCCCTTTGCCAGCAGCTTTCTTCTTGGCCCGGGCCAACAGCCTCTGCTTCTTCTCTTGGTTTGTCTCTGGTCTGTATTGTGGGCCAGCTTAAGCAGCAGAGTAGCTGTTTGGCTGTCTGGTGCCTGGGTGAACTGGTTAATCGCAGGAGGCACTTTCAGCCACTTATAGAGGATGGTTCTCTGCTGCTGCAACCTGATATAGCAGGGCCATTTCACAAAGTGGGTGAGGTCTCTTTTGGGCTGGATATCCTGTCCAATGCCAAAATTCTTAGGCCTTTTCTCAAACAAGGGATTTACCACTTTCTTGGCCTCCTGCTTCTTCACGACAGCAGGGGCTGGAGCCACCTTCTTCTCCTTGGCCTTCTTTCCTTTTGGCATCTTGGATGGTGGGAGGGGAAAGAAAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30261879 912 + 173848474 tctGTTTTTGTTTTGTTTTTGTTTTTTGAAGGAAAATTTGTATTATTTTAATTATTTTTACATACAGAAAACTCAACAGTGTACATTTCACCCAATTTAGTGGCATGTTCTTTACCCTTTGCCTTTTTGAGCTTGGCAATGCAAACCACATACTTGAGACCCAGGACACTGTCTCCCCAGTGACGGCGGATCTCATCGTATCTGTCATTGTAATTGGTCCTGAGAACTTCCACCAGCTTAGCCAAAGCACCTTTGTCTTCCGAGTTAACCTGTGTGAAGGTGACAGTGGTGCAGGTCTTCCTATGGACTAGATGTCCCAGTCTTGCCTTCCCTTTGATAATGCAGTAAGGGACCCCATTTTATGACACAGGACAGGCAAGAAGACAACCAGCTTGATGGGATCTACATCATGTGCAATCATCACCAGCTGAGCTTTCTTGTTCTCCACCAAGGTGGTGATGGTGTTAACTCCTGCTCGAAGGACAGGTGGTCTCTTAGTGGGGAATGTCCCCTTTGCCAGCAGCTTTCTTCTTGGCCCGGGCCAACAGCCTCTGCTTCTTCTCTTGGTTTGTCTCTGGTCTGTATTGTGGGCCAGCTTAAGCAGCAGAGTAGCTGTTTGGCTGTCTGGTGCCTGGGTGAACTGGTTAATCGCAGGAGGCACTTTCAGCCACTTATAGAGGATGGTTCTCTGCTGCTGCAACCTGATATAGCAGGGCCATTTCACAAAGTGGGTGAGGTCTCTTTTGGGCTGGATATCCTGTCCAATGCCAAAATTCTTAGGCCTTTTCTCAAACAAGGGATTTACCACTTTCTTGGCCTCCTGCTTCTTCACGACAGCAGGGGCTGGAGCCACCTTCTTCTCCTTGGCCTTCTTTCCTTTTGGCATCTTGGATGGTGGGAGGGGAAAGAAAG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6064268 912 +   6154872 tctGTTTTTGTTTTGTTTTTGTTTTTTGAAGGAAAATTTGTATTATTTTAATTATTTTTACATACAGAAAACTCAACAGTGTACATTTCACCCAATTTAGTGGCATGTTCTTTACCCTTTGCCTTTTTGAGCTTGGCAATGCAAACCACATACTTGAGACCCAGGATACTGTCTCCCCAGTGACGGCGGATCTCATCGTATCTGTCATTGTAATTGGTCCTGAGAACTTCCACCAGCTTAGCCAAAGCACCTTTGTCTTCCGAGTTAACCTGTGTGAAGGTGACAGTGGTGCAGGTCTTCCTATGGACTAGATGTCCCAGTCTTGCCTTCCCTTTGATAATGCAGTAAGGGACCCCATTTTATGACACAGGACAGGCAAGAAGACAACCAGCTTGATGGGATCTACATCATGTGCAATCACCACCGGCTGAGCTTTCTTGTTCTCCACCAAGGTGGTGATGGTGTTAACTCCTGCTCGAAGGACAGGTGGTCTCTTAGTGGGGAATGTCCCCTTTGCCAGCAGCTTTCTTCTTGGCCCGGGCCAACAGCCTCTGCTTCTTCTCTTGGTTTGTCTCTGGTCTGTATTGTGGGCCAGCTTAAGCAGCAGAGTAGCTGTTTGGCTGTCTGGTGCCTGGGTGAACTGGTTAATCGCAGGAGGCACTTTCAGCCACTTATAGAGGATGGTTCTCTGCTGCTGCAACCTGATATAGCAGGGCCATTTCACAAAGTGGGTGAGGTCTCTTTTGGGCTGGATATCCTGTCCAATGCCAAAATTCTTAGGCCTTTTCTCAAACAAGGGATTTACCACTTGCTTGGCCTCCTGCTTCTTCACGACAGCAGGGGCTGGAGCCACCTTCTTCTCCTTGGCCTTCTTTCCTTTTGGCATCTTGGATGGTGGGAGGAGAAAGAAAG
i gorGor5.CYUI01015250v1       C 0 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2824240 15917 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macFas5.chr4_KE145577_random   121255 4883 +    231697 I
e rheMac8.chr4                 30501541 4836 + 172585720 I
e nomLeu3.chr1a                74739612   0 + 122973662 C

a score=24856.000000
s hg38.chr6_GL000254v2_alt      1066489 29 +   4827813 aaacctattttctttataaattacccagt
s panTro5.chr6                 30032143 29 + 175400573 aaacctattttctttataaattacccagt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30262791 29 + 173848474 aaacctattttctttataaattacccagt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6065180 29 +   6154872 aaacctattttctttataaattacccagt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74739612 29 + 122973662 aaaccttctgtctttataaattacccagt
i nomLeu3.chr1a                C 0 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2824240 15917 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macFas5.chr4_KE145577_random   121255 4883 +    231697 I
e rheMac8.chr4                 30501541 4836 + 172585720 I

a score=1295369.000000
s hg38.chr6_GL000254v2_alt      1066518 557 +   4827813 ctcaggtatttctttataaaagtgtgagaatgaactaattcagaaaatcggtaccaggagttgggtattactataaaaattcttgaaaatgtggaaacagctttggaactgggtaacaggcagaggttggaagagtttggagagttcagaagacaagaaaatgggggaaaatttgcaacttcctagagatttgttaagctgttgtgaccaaaatgctgatagtgatatggacaatagagtccaggctgataaggtctcacatggagatgaggaatttattgggacctagaggaaaggtcacttttgttatgcattggcaaagaacttggaggcattgttccccctccctagggatctgtagaactttgaacttgagagtgatgtataagggtatctggtggaagaaatttctaagcagcatagcattccagatttggcctgcctgcttgtaatagcctatgcacatatgtgtgagcaaagacatgacctgaaactggaactgatatttaaaggggaaATTTAATATccaggacaattcctagtggagctgcaggaac
s panTro5.chr6                 30032172 557 + 175400573 ctcaggtatttctttataaaagtgtgagaatgaactaattcagaaaattggtaccagcagttgggtattactataaaaattgttgaaaatgtggaaacggctttggaactgggtaacaggcagaggatggaagagtttggagagttcagaagacaagaaaatgggggaaaatttgcaacttcctagagatttgttaagctgttgtgaccaaaatgctgatagtgatatggacaatagagtccaggctgataaggtctcacatggagatgaggaacttattgggacctagaggaagggtcacttttgttatgcattggcaaagaacttggaggcattgttccccctccctagggatctgtaggactttgaacttgagagtgatgtataagggtatctggtggaagaaatttctaagcagcatagcattccagatttggcctgcctgcttgtaatagcctatgcacatatgtgtgagcaaagacatgacctgaaactggaactgatatttaaaggggaaATTTAATATccaggacaattcctagtggagctgcaggaac
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30262820 557 + 173848474 ctcaggtatttctttataaaagtgtgagaatgaactaattcagaaaattggtaccaggagttgggtattactataaaaattgttgaaaatgtggaaacggctttggaactgggtaacaggcagaggttggaagagtttggagagttcagaagacaagaaaatgggggaaaatttgcaacttcctagagatttgttaagctgttgtgaccaaaatgctgatagtgatatggacaatagagtccaggctgataaggtctcacatggagatgaggaacttattgggacctagaggaaaggtcacttttgttatgcattggcaaagaacttggaggcattgttccccctccctagggatctgtaggactttgaacttgagagtgatgtataagggtatctggtggaagaaatttctaagcagcatagcattccagatttggcctgcctgcttgtaatagcctatgcacatatgtgtgagcaaagacatgacctgaaactggaactgatatttaaaggggaaATTTAATATccaggacaattcctagtggagctgcaggaac
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6065209 557 +   6154872 ctcaggtatttctttataaaagtgtgagaatgaactaattcagaaaattggtaccaggagttgggtattactataaaaattgttgaaaatgtggaaacggctttggaactgggtaacaggcagaggttggaagagtttggagagttcagaagacaagaaaatgggggaaaatttgcaacttcctagagatttgttaagctgttgtgaccaaaatgctgatagtgatatggacaatagagtccaggctgataaggtctcacatggagatgaggaacttattgggacctagaggaaaggtcacttttgttatgcattggcaaagaacttggaggcattgttccccctccctagggatctgtaggactttgaacttgagagtgatgcataagggtatctggtggaagaaatttctaagcagcatagcattccagatttggcctgcctgcttgtaatagcctatgcacatatgcgtgagcaaagacatgacctgaaactggaactgatatttaaaggggaaATTTAATATccaggacaattcctagtggagctgcaggaac
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74739641 554 + 122973662 ctcaggtatttctttataacagt-tgagaatgaa-taattcagaaaatcggtatcagaagttgggtagtgcaataaaggtagctgaaaatgtgaaaatgtctttggaactgggtaacaggtagaggttggaagagtttggagagtttagaagacaagaaaatgggggaaaacttggaacttcctagaggtttgttaaattgttgtgaccaaaatgctgacagtgatatggacaatagagtccaggctgatgaggtctcagatggagatgaggaacttactgggacctagaggaaaggtcacttttgttatgcattggcaaagaacttggaggcattctgccccctccttagggatctgtggaactttgaacatgagggtgatgattaagggcttctgatagaagaaatttctaagcagcatagcattcaagatttggcct-cctgtttgtaatagtctatgcacatatgtgtgagcaaaaaaatgatctgaaactggaactgatatttaaaggggaaATTTAATATccaggacaattcctagtggagttgcaggagc
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30506377 557 + 172585720 ctcaggtatttctttataacagtgtgaaaatcaactaattcagaaaattggcaccagaagttgggtattgctataaaggtagctgaaaatgtggaaatgattttggaactgaataacaggcagaggttggaagactttggagagttcagaagacaagaaaatgagggaaaatttggaacttcctaaagatttgttaagttgttgtgaccaaaatgccgatagtgatatggacaatagagtccaggctgatgaggtctcagatggagacaaggaacttattgggacctacaggaaaggtcacttttgttatgtattggcaaaggacttggaagcattgtgccccctccctagggatctgtggaacgttgaacctgagagtgatgattaagggtatctgatggaagaaatttctaagtagcataacattcaagatttggcctggctgcttgtaatagcctttgcacatacgtgggagcaaagaaatgaaccaaaactggaactgatatttaaaggggaaATTTAATACccaggacaattcctagtgcagctgcaggagc
i rheMac8.chr4                 I 4836 C 0
s macFas5.chr4_KE145577_random   126138 557 +    231697 ctcaggtatttctttataacagtgtgaaaatcaactaattcagaaaattggcaccagaagttgggtattgctataaaggtagctgaaaatgtggaaatgattttggaactgaataacaggcagaggttggaagactttggagagttcagaagacaagaaaatgagggaaaatttggaacttcctaaagatttgttaagttgttgtgaccaaaatgccgatagtgatatggacaatagagtccaggctgatgaggtctcagatggagacaaggaacttattgggacctacaggaaaggtcacttttgttatgcattggcaaaggacttggaagcattgtgccccctccctagggatctgtggaacgttgaacctgagagtgatgattaagggtatctgatggaagaaatttctaagtagcataacattcaagatttggcctggctgcttgtaatagcctttgcacatacgtgggagcaaagaaatgaaccaaaactggaactgatatttaaaggggaaATTTAATAGccaggacaattcctagtgcagctgcaggagc
i macFas5.chr4_KE145577_random I 4883 C 0
s macNem1.NW_012012100v1         117515 554 +   1495729 ctcaggtatttctttataacagtgtgagaagcaactaattcagaaaattggcaccaggagttggatattgctataaaggtagctgaaaatgtggaaatggctttcaaactgggtaacagacagaggtgggaagactttgaagagttcagaagacaagaaaatgagggaaaatttggaactccctagagatttgttaa---gttgtgaccaaaatgctgacagtgatatggacaatagaggccaggctgatgaggtctcagatggagatgaggaacttattgggacctacaggaaaggtcacttttgttatgcattggcaaaggacttggaggtattgtgccccctccctagggatctgtggaacattgaacctgagaatgatgattaagggtatctgatggaagaaatttctaagtagcataacattcaagatttggcctggctgcttgtaatagcctatgcacatatgtgtgagcaaagaaatgacccgaaactggaactgatatttaaagggaaaATTTAATACccaggacaattcctagtgcagctgcaggagc
i macNem1.NW_012012100v1       N 0 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2824240 15917 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=1935833.000000
s hg38.chr6_GL000254v2_alt      1067075 728 +   4827813 aggacccctgccaagactactaaatcatagagccactggcaatatgcaagctcagcctggaaaagccataagcattcaatgttcacccatgagagcagctatatggattatgttcaccaaagccacggatatgaggctgaagatggcattgtgagtccattgcttgcaccagccagtgtgctcagggttcaagatatagagtcaaaggagattattttagagctttaagttttaatgtctgccatgatgagtttcaaccttgtgaggacactg-cattcatttcttttggtccatttatttcttttggaatggaaatgtataggaaatgtctctaccactgttgtattaatattttagaagtaaataac--tttttt--taattttac-------aggtgcacagctataagaacttaccttgagtctcagatgagactttggaatttagagttgatgctggatcaacccaacac-attttggacaattgggagaagattattgtcttttgcaatgtgagaagaatgtgagctttggctggctagggacaggatgcaatgatataaatatttatccccagatacctcatgttaaaatctgatccccaatgttggacttagggcctaatgggtggcgtttgggtcttgggggccaatcttttatgaacagagag-atactgccctctct--cgggagtcaatgaattgttgccctattagtttccaaaagagctagttgtt-aaaa
s panTro5.chr6                 30032729 728 + 175400573 aggacccctgccaagactactaaatcatagagccactggcaatatgcaagttcagcctggaaaagccataagcattcaatgttcacccatgagagcagctatatggattatgttcaccaaagccacggatatgaggctgcagatggcattgtgagtccgttgctggcaccagcgagtgtgctcagggttcaagatatagagtcaaaggagattattttagagctttaagttttaatgtctgccatgatgagtttcaaccttgtgaggacactg-cattcatttcttttggcccatttatttcttttggaatggaaatgtataggaaatgtctctaccactgttgtattaatattttagaagtaaataac--tttttt--taattttac-------aggtgcacagctataagaacttaccttgagtctcagatgagactttggaatttagaattgatgctggatcaacccaacac-attttggacaattgggagaagattattgtcttttgcaatgtgagaagaatgtgagctttggctggctagggacaggatgcaatgatataaatatttatccccggatacctcatgttaaaatctaacccccaatgttggacttagggcctaatgggtggcgtttgggtcttgggggccaatcttttatgaacagagag-atactgccctctct--cgggagtcaatgaattgttgccctattagtttccaaaagagctagttgtt-aaaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30263377 728 + 173848474 aggacccctgccaagactactaaatcatagagccgctggcaatatgcaagttcagcctggaaaagccataagcattcaatgttcacccatgacagcagcaatatggattatgttcaccaaagccacggatatgaggctgcagatggcattgtgagtccgttgcttgcaccagcgagtgtgctcagggttcaagatatagagtcaaaggagattattttagagctttaagttttaatgtctgccatgatgagtttcaaccttgtgaggacactg-cattcatttcttttggcccatttatttcttttggaatggaaatgtataggaaatgtctctaccactgttgtattaatattttagaagtaaataac--tttttt--taattttac-------aggtgcacagctataagaacttaccttgagtctcagatgagactttggaatttagaattgatgctggatcaacccaacac-attttggacaattgggagaagattattgtcttttgcaatgtgagaagaatgtgagctttggctggctagggacaggatgcaatgatataaatatttatccccggatacctcatgttaaaatctaacccccaatgttggacttagggcctaatgggtggcgtttgggtcttgggggccaatcttttatgaacagagag-atactgccctctct--cgggagtcaatgaatttttgccctattagtttccaaaagagctagttgtt-aaaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6065766 728 +   6154872 aggacccctgccaagactactaaatcatagagccactggcaatatgcaagttcagcctggaaaaaccataagcattcaatgttcacccatgagagcagctatatggattatgttcaccaaagccatggatatgaggctgcagatggcattgtgagtccgttgcttgcaccagccagtgtgctcagggttcaagatatacagtcaaaggagattattttagagctttaagttttaatgtctgccatgatgagtttcaaccttgtgaggacactg-cattcatttcttttggcccatttatttcttttggaatggaaatgtataggaaatgtctctaccactgttgtattaatattttagaagtaaataac--cttttt--taattttac-------aggtgcacagctataagaacttaccttgagtctcagatgagactttggaatttagagttgatgctggatcaacccaacac-attttggacaattgggagaagattattgtcttttgcaatgtgagaagaatgtgagctttggctggctagggacaggatgcaatgatataaatatttatccctggatacctcatgttaaaatctaacccccaatgttggacttagggcctaatgggtggcgtttgggtcttgggggccaatcttttatgaacagagag-atactgccctctct--cgggagtcaatgaattgttgccctattagtttccaaaagagctagttgtt-aaaa
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74740195 723 + 122973662 aggacccatgccaggactactaaatggtagagccactggcaatgtgcaagctcagcctggaaaatccataggtattcaattttcacccatgagagcagctatatgggttatgttcagcaaagccaaggatgtggggctgcaaatggcattgtgagcccaccacttgaacc----agtgtgctcaggattcaagatatagggtcaaaggagattattttagagctttaagttttaacgtcttccatgatgagtttcagccttgtgaggacactg-cattcatttcttttggccaatttattccttttagaatagaaatgtataagaaatgtctcttccactcttgtattaatattttagaagtaaataac--cttttt-aaaactttac-------aggctcacagctatagagacttaccttgagtctcagatgagactttggaattttgagttgatgctggaacaacctagcac-atttgggacaattggg---aaattatcatattttgcaatgggagaaaaacatgagctctggctggctagggacagaatgcaatgatataaatatttactccctgatacctcatgttaaaatctgacccccaatgttggacgtggggcctaatgggtgctgtttgggtcatgggggccaatcttttatgaataaagag-atcctgtcctctct--cggaagtgaatgaattgttactctttcagtttccaagagagccagttgttaaaaa
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30506934 735 + 172585720 aggacccctgccaggactactaaattgtagagccactggcaatgtgcaacctcagcctggaaaa-ccataggcattcaattttcacccatgagagcagctatatgggttatgttcagcaaaaccataaatgtggggctacaaaaggcgttatgagcccagaacttgaaccagtcaatgtgctcaggattcaaaatatagagttaaaggagattattttagagttttaagttttaatctctgctatgaggagtttcag-cctgtgagaagactg-cattcatttattttggcccatttatttcttttggaatggaaatgtataagaaatgtcttttccactgttgtattaatattttagaggtaaataac--attttttaaaattttactggctcaaagcttatagctttgagaacgcaccttgagtctcagatgagactctggaattttgagttgatgctggaacaacctaaaataatttgggacaattggg---agattattgtgttttgcaatgtgagaagaacatgagctttggCTGGCTAGTGACAGGAtgcaatgatataagtatttatcccttgatacctcatgttaaaatctgatgcccactgtgggatgtggggcctaatgggtgtcgttcgggtcatggggacaaattttttatgaacagagag-atactgctctctctctctggagtgaatgaattgttgctctattattttccaagagagctagttgtt-aaaa
i rheMac8.chr4                 C 0 I 1
s macFas5.chr4_KE145577_random   126695 733 +    231697 aggacccctgccaggactactagattgtagagccactggcaatgtgcaacctcagcctggaaaa-ccataggcattcagttttcacccatgagagcagctatatgggttatgttcagcaaaaccataaatgtggggctacaaaaggcgttatgagcccagaacttgaaccagtcaatgtgctcaggattcaaaatatagagttaaaggagattattttagagttttaagttttaatctctgctatgatgagtttcag-cctgtgagaagactg-cattcatttcttttggcccatttatttcttttggaatggaaatgtataagaaatgtcttttccactgttgtattaatattttagaggtaaataac--attttttaaaattttactggctcaaagcttatagctttgagaactcaccttgagtctcagatgagactctggaattttgagttgatgctggaacaacctaaaataatttgggacaattggg---agattattgtgttttgcaatgtgagaagaacatgagctttggCTGGCTAGTGACAGGAtgcaatgatataagtatttatcccttgatacctcatgttaaaatctgatgcccactgtgggatgtggggcctaatgggtgtcgttcgggtcatggggacaaattttttatgaacagagag-atactgctctctct--ctggagtgaatgaattgttgctctattattttccaagagagctagttgtt-aaaa
i macFas5.chr4_KE145577_random C 0 I 1
s macNem1.NW_012012100v1         118069 736 +   1495729 aggacccctgccaggactactacattgcagagccactggcaatgtgcaacctcagcctggaaaagccataggcattcaattttcacccatgagagcagcgatatgggttatgttcagcaaagccataaatgtggggctacaaatggcattatgagcccagaacttgcaccagccaatgtgctcaggattcaaaatatagagttaaaggagattattttagagctttaagttttaatctctgctataatgagattcag-cctgtgaggacactg-cattcatttcttttgacccatttattccttttggaatggaaatgtataagaaatgtctcttccactgttgcattaatactttagaggtaaataacatattttttaaaatgttactggttcaaagcttatagctgtgagaacttaccttgagtctcagatgagactctggaattttgagttgatgctggaacaacctaaaataatttgggacaattggg---agattattgtgttttgcaatgtgagaagaacatgagctttggCTGGCTAGCGACAGGGtgcaatgatataagtatttatcccttgatacctcatgttaaaatctgatgcccactgtgggatgtggggcccaatgggtgctgtttggattatggggaccaatcttttatgaatagagagaatactgccctctct---tggagtgaatgaattgttgctctattattttccaagagagctagttgtt-aaaa
i macNem1.NW_012012100v1       C 0 I 1
s colAng1.NW_012115566v1        2840157 723 -   3067355 aggactcctgccaggattactaaatggtagagccactggcaatgtgcaacctcagtctggaaaagctataggcattcagttttcacccatgagagcagctatgagggtcatgttcggcaaagccatggatgtggggctgcaaatgacattgggagtccactgcttgcatcag----tgtgcacaggattcaagacacacagtcaagggagattattttagagctttaagatttaatgtttgccatgatggatttcagacttgtgtggagactgtcattcatttcttttggtccatttctctcttttggaatggaaatgtgtaagaaatg----ttctactgttgtgttaatatgttagaagtaaatgat--ctttcttttttttttatt--ttacaggctcacagctataagaacttactttgagtctcagatgagactttggacttttgagttgatgctggaacaacttaatac-atttgggacaattgggaacagattattatattttgcaatgtgagaagaacatgagccttggctgcctag-ggcaggaTACAatgatttaaatatgtatcccctcattcctcatgttgaaatttgaccctcagtattagaggtaggggctaatgggtagtgcttgggccatatgggccaatcttttatgaatagagag-atactgacctctct--cagaagtgaataaattg----tctattagtttccaagagagctacttgtt-aaaa
i colAng1.NW_012115566v1       I 15917 I 17
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=33444.000000
s hg38.chr6_GL000254v2_alt      1067803 17 +   4827813 gagtctcgcaccttcct
s panTro5.chr6                 30033457 17 + 175400573 gagtctcgcaccttcct
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30264105 17 + 173848474 gagtctcgcaccttcct
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6066494 17 +   6154872 gagtctcgcagcttcct
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74740918 17 + 122973662 gagcctggcaacttcct
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30507670 17 + 172585720 gagcctggcaacttcct
i rheMac8.chr4                 I 1 C 0
s macFas5.chr4_KE145577_random   127429 17 +    231697 gagcctggcaacttcct
i macFas5.chr4_KE145577_random I 1 C 0
s macNem1.NW_012012100v1         118806 17 +   1495729 gagcctggcaaattgct
i macNem1.NW_012012100v1       I 1 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2840880 17 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=199303.000000
s hg38.chr6_GL000254v2_alt      1067820 67 +   4827813 actccctctgttcctctcttaccacgtgacttttgcacataccagctcccctttgccttctgccatg
s panTro5.chr6                 30033474 67 + 175400573 actccctctgttcctctcttaccacgtgacttctgcacataccagctcccctttgccttctgccatg
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30264122 67 + 173848474 actccctctgttcctctcttaccacgtgacttctgcacataccagctcccctttgccttctgccatg
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6066511 67 +   6154872 actccctctgttcctctcttaccacgtgacttctgcacataccagctcccctttgccttctgccatg
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74740935 67 + 122973662 aagctctctgttcctctcttaccatgtgatctctgcacataccagctcccctttgccttctgccatg
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30507687 67 + 172585720 actctctctgttcctctgttaccatgtgatctctgcacataccagctcccctttgccttctgccgtg
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   127446 67 +    231697 actctctctgttcctctgttaccatgtgatctctgcacataccagctcccctttgccttctgccgtg
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1         118823 67 +   1495729 actctctctgttcctctgttaccatgtgatctctgcacatactagctcccctttgcattctgccatg
i macNem1.NW_012012100v1       C 0 T 99904
s colAng1.NW_012115566v1        2840897 67 -   3067355 actctctctgctcctctctcaccatgtgatctctgcacataccagctccccctccccttatgtcatg
i colAng1.NW_012115566v1       I 17 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=1016045.000000
s hg38.chr6_GL000254v2_alt      1067887 386 +   4827813 agtggaagcagcctgaggccctcgctaaatgctca------aacatttccagacatcagaatcctgagccaaatgaaccttgtttatataaattagtcagtctcagacatttctttatagcaacacaaaacggaataagacaaccctctcatcataggta--tgtgtctgtggcagccagcccccattctcaaggtatccaggatccactcagccaagagtcctttcctcagtattctaaagacactctaatcactcaagagattctaaggtttttaggagaaaccagggac-aaaactaaatg-ttTTTGTGATAACTCATATTACCCCCTTTTCTTTGACCACATATTTTTCATACGAAAAGGATTATAACAGTAAAGAAGCATTGGCATATTA
s panTro5.chr6                 30033541 386 + 175400573 agtggaagcagcctgaggccctcattaaatgctca------aacatttccagacatcagaatcctgagccaaatgaaccttgtttatataaattagtcagtctcagacatttctttatagcaacacaaaacggaaaaagacaaccctctcatcataggta--tgtgtctgtggcagccagcccccattctcaaggtatccaggatccactcagccaagagtcctttcctcagtattctaaagacactctaataactcaagagattctaaggtttttaggagaaaccagggac-aagactaaatg-ttTTTGTGATAACTCATATTACCCCCTTTTCTTTGACCACATATTTTTCATACGAAAAGGATTATAACAGTAAAGAAGCATTGGCATATTA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30264189 386 + 173848474 agtggaagcagcctgaggccctcattaaatgctca------aacatttccagacatcagaatcctgagccaaatgaaccttgtttatataaattagtcagtctcagacatttctttatagcaacacaaaacggaaaaagacaaccctctcatcataggta--tgtgtctgtggcagccagcccccattctcaaggtatccaggatccactcagccaagagtcctttcctcagtattctaaagacactctaataactcaagagattctaaggtttttaggagaaaccagggac-aagactaaatg-ttTTTGTGATAACTCATATTACCCCCTTTTCTTTGACCACATATTTTTCATACGAAAAGGATTATAACAGTAAAGAAGCATTGGCATATTA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6066578 386 +   6154872 agtggaagcagcctgaggccctcattaaatgctca------aacatttccagacatcagaatcctgagccaaatgaaccttgtttatataaattagtcagtctcagacatttctttatagcaacacaaaacggaaaaagacaGccctctcatcataggta--tgtgtctgtggcagccagcccccattctcaaggtatccaggatccactcagccaagagtcctttcctcagtattctaaggacactctaataactcaagagattctaaggtttttaggagaaaccagggac-aagactaaatgttTTTTGTGATAACTCATATTACCCCCTTTTCTTTGACCACATA-TTTTCATATGAAAAGGATTATAACAGTAAAGAAGCATTGGCATATTA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74741002 382 + 122973662 agtgggagcagcctgaggccctcaccaaatgctca------aacatttccagacatcagaatcccaagccacatgaaccttgtttatataaattagtcagtctctgacatttctttatagcaacacaaaatggtataagacaGCActctcatcacaggtg--tgtgtctctggcagccagcccccattctcaagatatccagggtccgctcagccatgagtcctctcatcaatattcta-----actcttatcactcaagagattctaaggtttttaggagaaaccagggacaaagactaaatg-ttTTTGTTATACCTCAGATTACCCACTTTTCTTTTACCACATATCTTTTCTAGGAAAAGGATTACAAAAGTAAAGAGGTATTGGCTTATTA
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30507754 360 + 172585720 agtggaagcagcctgaggccctcactaaatgctca------aacatttccagacatcagaatcctgagacacatgaaccttgtttatgtaaattagtcagtctctgacatttatttatagcaacacaaaatggaataagacaacgttctcatcacaggta--tgtgtctctggcagccagcccccattctcaagataactaggatctgctcagccaagaatcttgtcatcagtattctaaagacactcttatcactcaagag--tctaaggtttttaggagaaaccagggacaaag--------------------------actacatgttTTTCTTTGACCACATATCTTTTATAGGAAAAGGATTATAACAGTAAAGACATATTGGCATATTA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   127513 362 +    231697 agtggaagcagcctgaggccctcactaaatgctca------aacatttccagacatcagaatcctgagacacatgaaccttgtttatgtaaattagtcagtctctgacatttatttatagcaacacaaaatggaataagacaacgttctcatcacaggtatgtgtgtctctggcagccagcccccattctcaagataactaggatctgctcagccaagaatcctgtcatcagtattctaaagacactcttatcactcaagag--tctaaggtttttaggagaaaccagggacaaag--------------------------actacatgttTTTCTTTGACCACATATCTTTTATAGGAAAAGGATTATAACAGTAAAGACATATTGGCATATTA
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1          18986 381 +   1495729 agtgggagcagtctaaggccctcaccaaatgctca------aacatttccagacatcaaaatcccaagccacatgaaacttgtttatataaattagtcagtgtcagacatttctttatagcaacacaagatggaataagacagcactctcatcacaggta--tgtgtctctggcagccagcccccattctcaagatatccagggtccactcagccatgagtcctctcatcaatattcta-----attcttatcactcaagagattctaaggtttttaggagaaaccagggacaaaga-taaatg-ttTTTCTTATAACTCACATTACTCACTTTTCTTTGACCACATATCTTTTACAGGAAAAGGATTACAAAAGTAAAGAGGTATTGGCATATTA
i macNem1.NW_012012100v1       T 99904 I 99883
s colAng1.NW_012115566v1        2840964 389 -   3067355 agtggaagcagcctgaggccctcactaaatgctcaaacttgaacatttccatatatcagaatcctgagtcaaataaaccttgtctatgtaaattagtc----tcagacatttctttatagcaacacaaaatggaataaggcaaccctctaatcacaggta--tgtgtctctggcagccagcccccattttgaagctatccaggagcccctcagttaagagtcctgtcatcagcattctaaagacactttcatcactcaagagattctatggtttttaggagaaaccagggaaaaagactaaatg-ttTTTATCATACCTCAAATTACCCCCTAGTCTTTGATCACATATCTCTTATAGGAAAAGGATTACAACAGTAAAGAGGTATTGGCATATAA
i colAng1.NW_012115566v1       C 0 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=1617423.000000
s hg38.chr6_GL000254v2_alt      1068273 563 +   4827813 TCCAAGTCTCATTCGGtcattcaaaattaggccagtttatcatcctcttgtatgaatatgtctcccagaatgacatcactcagctttgcagacaccattcaatcttatcaggttccaaaaacaagaatggtctcagggacatacagcttcacccttttaggcatccagtatagttgacctaagagacaaca---tctcttgctcacaccacttttgaggagataagctaatattgaattttcctcattacataaccctttgatttattcacctaccctcagccactattcctccttctgtccctttatatcagtcttttccagttctagaagtgacattaggtttggctgctgtgctggcctagactgcatgcagcaatagtattctaccatgtcttctcttaatctactcttgatcatagacagtaggttacataggttaggaactagtgcaggctatctgaccaccagtctacgtagctctacttacagttaatcccgactttgccagatgaaatgaaggcacagcgcaatccttgatttgcttgggaattcttacataaaggt
s panTro5.chr6                 30033927 563 + 175400573 TCCAAGTCTCATTCGGttattcaaaattaggccagtttatcatcctcttgtatgaatatgtctcccagaatgacatcactcagctttgcagacaccattcaatcttaacaggttccaaaaacaagaatggtctcagggacatacagcttcacccttttaggcatccactatagttgacctaagagacaaca---tctcttgctcacaccacttttgaggagataagctaatattgaattttcctcattacataaccctttgatttattcacttaccctcagccactattcctccttctgtccctttatatcagtcttttccagttctagaagtgacattaggtttggctgctgtgctggcctagactgcatgcagcaatagtattctaccatgtcttctcttaatctacttttgatcatagacggtaggttacataggttaggaactagtgcaggctatctgaccaccagtctatgtagctctacttacagttaatcctgactttgccagatgaaatgaaggcacagcacaatccttgatttgcttgggaattcttacataaaggt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30264575 563 + 173848474 TCCAAGTCTCATTCGGttattcaaaattaggccagtttatcaccctcttgtatgaatatgtctcccagaatgacatcactcagctttgcagacaccattcaatcttaacaggttccaaaaacaagaatggtctcagggacatacagcttcacccttttaggcatccactatagttgacctaagagacaaca---tctcttgctcacaccacttttgaggagataagctaatattgaattttcctcattacataaccctttgatttattcacttaccctcagccactattcctccttctgtccctttatatcagtcttttccagttctagaagtgacattaggtttggctgctgtgctggcctagactgcatgcagcaatagtattctaccatgtcttctcttaatctacttttgatcatagacggtaggttacataggttaggaactagtgcaggctatctgaccaccagtctatgtagctctacttacagttaatcctgactttgccagatgaaatgaaggcacagcacaatccttgatttgcttgggaattcttacataaaggt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6066964 563 +   6154872 TCCAAGTCTCATTCGGtcattcaaaattaagccagtttatcatcctcttgtatgaatatgtctcccagaacgacatcactcagctttgcagacaccactcaatcttaacaggttccaaaaacaagaatggtctcagggacatacagcttcacccttttaggcatccagtatagttgacctaagagacaaca---tctcttgctcacaccacttttgaggagataagctaatattgaattttcctcattacataaccctttgatttattcacttaccctcagccactattcctccttctgcccctttatatcagtcttttccagttctagaagtgacattaggtttggctgctgtgctggcctagactgcatgcagcaatagtattctaccatgtcttctcttaatctacccttgatcatagacggcaggttacataggttaggaactagtgcagactatctgaccaccagtctacgtagctctacttacagttaatcccgactttgccagatgaaatgaaggcacagcacaatccttgatttgcttgggaattcttacataaaggt
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74741384 555 + 122973662 TCAGAGTCtcattcagtcattcaaaattagaacagtttaccatcctctcgtatgaatatgtctcccagaatgaagtcactcaggtttgcagacaccattcaaccttaccaggctccaaaaacaagaacggtctcagggacatatggcttcactcttttaggcacccagtataattgacctaagagacaatatcttctcttgctcacagcacttttgaggaattaagctaatattgaattttcctcattacataaccctttgatttattcacttaccctcagccactattcctccttctgtccctttatatcagtcttttccagttttagaggtgacatcaggtttggctgctgtgctggcctagactgcaggcagcaatagtattctagcatgccttccctcggtctactcttggtcatagagggtaggttatgtaggtaaggagctagtgggggccatctgaccaccaggctatatagctctatttactgttaatcctgactttgccagatgaaatgtaggcgtagcaccatctttgagttgcttgggaattct-----------
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30508114 566 + 172585720 TCAGAGTCtcattcagtcattcaaaattagaccagtttatcatcctcttgtatgaatatgtctcccagaatgaagtcattcagctttgcagacaccactcagtcttaccgggttccaaaaacatgaatggtctcagggacatatggcttctcccttttaggcatccagtataattgaactaagagacagtatcttctcttgctcacactacttttgaggagataagctaatattgaattttcctcactacataaccctttgatttattcacttaccctcagccactattcctctttctgtccgtttatatcagtctttttaggttttggaagtgacatttggtttggctgctgtgctggtctagacttcaggcagcaatagtattctagcatatcttccctcagtctactcttgatcatagagggtaggttacatagggaaggaactagttgggactattggaccaccaggctacatagctctacttacagttaaacctgactttgccagatgaaatgaaggcatagcacaatccttgagttgcttggggattcttacatacaggt
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   127875 565 +    231697 TCAGAGTCtcattcagtcattcaaaattagaccagtttatcatcctcttgtatgaatatgtctcccagaatgaagtcattcagctttgcagacaccactcagtcttaccgggttccaaaaacatgaatggtctcagggacatatggcttctcccttttaggcatccagtataattgaactaagagacagtatcttctcttgctcacactacttttgaggagataagctaatactgaattttcctcactacataaccctttgatttattcacttaccct-agccactattcctctttctgtccctttatatcagtcttttcaggttttggaagtgacatttggtttggctgctgtgctggtctagacttcaggcagcaatagtattctagcatatcttccctcagtctactcttgatcatagagggtaggttacatagggaaggaactagttgggactattggaccaccaggctacatagctctacttacagttaaacctgactttgccagatgaaatgaaggcatagcacaatccttgagttgcttggggattcttacatacaggt
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1         119250 566 +   1495729 TCAGAGTCtcattcagtcatttaaaattaggccagtttatcatcctcttggatgaatatgtctcccagaatgaagtcattcagctttgcagacaccactcaatcttaccgggttccaaaaacaagaatggtctcagggacatatggcttcacccttttaggcatccagtataattgacctaagagacaatatcttctcttgcttacactacttttgaggagttaagctaatattgaatttttctcattacataaccctttgatttattcacttaccctcagccactattcctctttctgtccctttatatcagtcttttccagttttggaagtgacattaggtttgtctgctgtgctggtctagatcgcaggcagcagtagtattctagaatgtcttccctaagtctactcttgatcatagagggtaggttacatagcgaaggaactagttggtgctattgtaccaccaggctacatagctctacttactgttaatcctgactttgccagatgaaatgaaggcatagcacaatccttgagttgcttggggattcttacatacaggt
i macNem1.NW_012012100v1       I 99883 C 0
s colAng1.NW_012115566v1        2841353 565 -   3067355 TCCAAGTCtcattcagtcattcaaaattagtccagtttatcatccacttgtgtgaatatgtctcccaaaatgacatcactcaggtttgcagactccactcaatcttaccaggttccaaaaacaagaatggtgtcagggacatatggcttc-cccttttaggcatctggtgtttttgaactaagagataatatcttctcttgctcacaccacttttgagaagttaagctaatattgaattttccttgttagataacccatttatttattcatttaccctcagctactattcctccttctgtctatttatatcagtcttttccagttctggaagtgacattagatttggctgctgtgctggcctagacttcaggcagcaatagtattctagcatgtctttcctcagcctactgttgatcatagacagtaggttacataggtaaaaagctagtaggggttatctgaccatcaagctacatagctctacttgctgttaatcccgactttgccagatgaaatgaagacacagcacaatccttgatttgtttgggaattcttacataaaggt
i colAng1.NW_012115566v1       C 0 I 8097
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=673149.000000
s hg38.chr6_GL000254v2_alt      1068836 309 +   4827813 ataaaaatatagttatggttttttccttagggataattcctgtttctggcagttcgatttgcatccctgttcctggtaccactgcaccctgtgtaaaaaaagaaataagaaatgaagtgtagtcattattccagcatc--ctccccttaagaagaattgtatgtacagtcataacagcatcaccctgatccatcaggaaaaagagaggaagctacctagtggagtcagtttcgcagctccacccatgttgacagtaagcacattcatgaagatataaaagccagtccttcatgtttata-ttgcccaacaat
s panTro5.chr6                 30034490 310 + 175400573 ataaaaatatagttatggttttttccttagggataattcctgtttctggcagttcgatttgcatccctgttcctggtaccactgcaccctgtgtaaaaaaagaaataagaaatgaagtgtagtcattattccagcatc--ctccccttaagaagaattgtatgtacagtcataacagcatcaccctgatccatcaggaaaaagagaggaagctacctagtggagtcagtttcgcagccccacccatgttgacagtaagcacattcatgaagatataaaagccagtccttcatgtttagaattgcccaacaat
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30265138 310 + 173848474 ataaaaatatagttatggttttttccttagggataattcctgtttctggcagttcgatttgcatccctgttcctggtaccactgcaccctgtgtaaaaaaagaaataagaaatgaagtgtagtcattattccagcatc--ctccccttaagaagaattgtatgtacagtcataacagcatcaccctgatccatcaggaaaaagagaggaagctacctagtggagtcagtttcgcagccccacccatgttgacagtaagcacattcatgaagacataaaagccagtccttcatgtttagaattgcccaacaat
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6067527 310 +   6154872 ataaaaatatagttatggttttttccttagggataattcctgtttctggcagttcgatttgcatccctgttcctggtaccactgcaccctgtgtaaaaaaagaaataagaAATGAAGTGTAGTCATTATTCCAGCATC--CTCCCCTTAAGAAGAATTGTATGTACAGTCATAACAGCATCACCCTGATCCATCAGGAAAAAGAGAGGAAGCTACCTAGTGGAGTCAGTTTCGCAGCCCCACCCATGTTGACAGTAAGCACATTCATGAAGATATAAAAGCCAGTCCTTCATGTTTAGAATTGCCCAACAAT
i gorGor5.CYUI01015250v1       C 0 I 6067
s nomLeu3.chr1a                74741939 304 + 122973662 -------tatagttatggtttttggcttaaagataattcctgtttctggcactttgattttcatccctattcctggtacCACTGCATCACATATgaaaaaagaaattcgaggtgaagtgtagtcattattccagcatcttttccccttcagaagaattgtatgtatcgtcataacagcatcatcctgatccatcaggtaaaagagaggaagctatctagaggagtcactcttgcagccccatccatgtggacagtgagcacattcatgaagatgtaaaagccagtccttcatgtttata-ttgcccaacaac
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30508680 310 + 172585720 gtaaaaatacagttatggtttttggcctagggataattcctgtttctggcacttttatttacatccctattcctagtaccacggcatcacatatgaaaaaagaaattttaggtgaagtgtagtcattactccagcatcttctcccattaggaagaa-tgtatgtatagtcataatagcatcatcctgatccatcaggacaaagagaggaagctgcctagtggagtcactcttgcagccccacccatgttgacagtgagcacatttatggagatataaaagccagtccttcgtgtttata-ttgctcaacaat
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   128440 310 +    231697 gtaaaaatacagttatggtttttggcctagggataattcctgtttctggcacttttatttacatccctattcctagtaccatggcatcacatatgaaaaaagaaattttaggtgaagtgtagtcattactccagcatcttctcccattaggaagaa-tgtatgtatagtcacaatagcatcatcctgatccatcaggacaaagagaggaagctgcctagtggagtcactcttgcagccccacccatgttgacagtgagcacatttatggagatataaaagccagtccttcgtgtttata-ttgctcaacaat
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1         119816 311 +   1495729 gtaaaaatatagttatggtttttggcttagggataattcctgtttctggcacttttatttacatccctattcctagtaccacggcagcacatatgaaaaaagaaatttgaggtgaagtgtagtcattactccagcatcctctccccttaggaagaattgcatgtatagtcataacagcattgtcctgatccatcaggaaaaagagaggaagctacctagtggaatcacacttgcagcgccacccatgttgacagtgagcgcattcatggagatataaaagccagtccttcatgtttata-ttgctcaaaaat
i macNem1.NW_012012100v1       C 0 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2841918 8097 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=46291.000000
s hg38.chr6_GL000254v2_alt      1069145 22 +   4827813 tatattggcagtttttagacaa
s panTro5.chr6                 30034800 22 + 175400573 tatattggcagtttttagacaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30265448 22 + 173848474 tatattggcagtttttagacaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6073904 22 +   6154872 TATATTGGCAGTTTTTAGACAA
i gorGor5.CYUI01015250v1       I 6067 C 0
s nomLeu3.chr1a                74742243 14 + 122973662 tatattgccagttt--------
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30508990 22 + 172585720 tatattggcagtttttagacaa
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   128750 22 +    231697 tatattggcagtttttagacaa
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1         120127 22 +   1495729 tatattggcagtttttagacaa
i macNem1.NW_012012100v1       C 0 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2841918 8097 -   3067355 I
e chlSab2.chr17                29313226 14115 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=3276.000000
s hg38.chr6_GL000254v2_alt      1069167 1 +   4827813 t
s panTro5.chr6                 30034822 1 + 175400573 t
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30265470 1 + 173848474 t
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6073926 1 +   6154872 t
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74742257 1 + 122973662 t
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30509012 1 + 172585720 t
i rheMac8.chr4                 C 0 I 420
s macFas5.chr4_KE145577_random   128772 1 +    231697 t
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1         120149 1 +   1495729 t
i macNem1.NW_012012100v1       C 0 I 871
s chlSab2.chr17                29327341 1 -  71996105 t
i chlSab2.chr17                I 14115 I 865
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2841918 8097 -   3067355 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I

a score=39632.000000
s hg38.chr6_GL000254v2_alt      1069168 50 +   4827813 tagacaaccaatgtttcaactgactatttctttttctt-------ttttttt-ttgag
s panTro5.chr6                 30034823 50 + 175400573 tagacaaccaacgtttcaactgactatttctttttttt-------ttttttt-ttgag
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30265471 47 + 173848474 tagacaaccaacgtttcaactgactattcttttttttt-------tttttgt----ag
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6073927 51 +   6154872 tagacaaccaatgtttcagctgactatttctttttttt-------ttttttttttgag
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74742258 57 + 122973662 tagacaaacaatgcttcaactgaccatttcaattttctatcaaagttttctt-ctgag
i nomLeu3.chr1a                C 0 I 7847
s macFas5.chr4_KE145577_random   128773 49 +    231697 --------cagtgtttcagttgaccatttcaattttctatccaagttttctc-ctgag
i macFas5.chr4_KE145577_random C 0 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2841918 8097 -   3067355 I
e chlSab2.chr17                29327342 865 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macNem1.NW_012012100v1         120150 871 +   1495729 I
e rheMac8.chr4                 30509013 420 + 172585720 I

a score=3386.000000
s hg38.chr6_GL000254v2_alt      1069218 5 +   4827813 atgga
s panTro5.chr6                 30034873 5 + 175400573 atgga
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30265518 5 + 173848474 atgga
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6073978 5 +   6154872 atgga
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random   128822 5 +    231697 gagga
i macFas5.chr4_KE145577_random C 0 I 325
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2841918 8097 -   3067355 I
e chlSab2.chr17                29327342 865 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macNem1.NW_012012100v1         120150 871 +   1495729 I
e rheMac8.chr4                 30509013 420 + 172585720 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=418277.000000
s hg38.chr6_GL000254v2_alt      1069223 762 +   4827813 gtctcactctgtcgcccaggctggagtgcagtagtatgatctcggctca-tgcaacctctgcctcccaggttcaagcaattctactgtctcagcctcccgagtagctggtaatacaggcgcccaccaccacacgcagctaatttttgtattttcagtagagacggggtttcaccatattggccaggatagtctcaaactcctaaactcaggtgatccgcccgcctcggccaccaaaagtgctgggattacaggcatgagccaccgcgcctggtcagccatttcaatattctatcaaagtttcccctgaatagtacatttccctgtgcactgttggctttttaaggctgtaaagtgtgttttcttgtgtaaagaaatgtgactcaacagtccaaattggtgtaatctccatttttctggttcttgtatagcctttgaagcattgacatctacccctggttgatcatagcccaatccagagtcagtgacttccctgtcaagatccattggcagctcctttggggttgctggcattagtctggcttgccagctatgaatgatcaaagcttcccactacagaatctgtcacagagctgcctctgtctgttttCTtgaccaaaagtcaaaacagacagtatgagaaatgagataaattaccaaaattgtgaacacaagagagagtatcactaatgaccctttagaagttaaaaaacattataagttaatactctgaaaaacctgaagccaatcagttagaccacttag
s panTro5.chr6                 30034878 762 + 175400573 gtctcactctgtcgcccaggctggagtgcagtagtatgatctcggctca-tgcaacctctgcctcccaggttcaagcaattctactgtctcagcctcccgagtagctggtaatacaggcgcccaccaccacacgcagctaatttttgtattttcagtagagacggggtttcaccatattggccaggatagtctcaaactcctaaactcaggtgatccgcccgcctcggccacccaaagtgctgggattacaggcatgagccaccgcgcctggtcagccatttcaatattctatcaaagtttcccctgaataggacatttccctgtgcattgttggctgtttgaggctataaagtgtgttttcttgtgtaaagaaatctgactcaacagtccaaattggtgcaatctccatttttctggttcttgtatagcccttgaagcattgacatccacccctggttgaacataacccaatccagagtcagtgacttccctgtcaagatccattggcagctcctttggggttgctggcatcagtctggcttgccagctatgaatgatcaaagcttcccactagagaatctgtcacagagctgcctctgtctgttttCTtgaccaaaagtcaaaacagacagtatgagaaatgagataaattaccaaaattgtgaacacaagagatagtatcactaatgacactttagaagttaaaaaacattataagttaatactctgaaaaacctgaagccaatcagttagaccacttag
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30265523 760 + 173848474 gtctcactctgtcgcccaggctggagtgcagtagtatgatctcggctca-tgcaacctctgcctcccaggttcaagcaattctactgtctcagcctcccgagtagctggtaatacaggcgcccaccaccacacgcagctaatttttgtattttcagtagagacggggtttcaccatattggccaggatagtctcaaactcctaaactcaggtgatccgcccgcctcggccacccaaagtgctgggattacaggcatgagccaccgcgcctggtcagccatttcaatattctatcaaagtttcccctgaataggacatttccctgtgcattgttggctgtttgaggctgtaaagtgtgttttcttgtgtaaagaaatctgactcaacagtccaaattggtgcaatctccatttttctggttcttgtatagcccttgaagcattgacatctacccctggttgaacataacccaatccagagtcagtgacttccctgtcaagatccattggcagctcctttggggttgctggcatcagtctggcttgccagctatgaatgatcaaagcttcccactagagaatctgtcacagagctgcctctgtctgttttCTtgaccaaaagtcaaaacagacagtacgagaaatgagataaattaccaaaattgtgaacacaagagatagtatcactaatgacactttagaagttaaaaaacattat--gttaatactctgaaaaacctgaagccaatcagttagaccacttag
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6073983 761 +   6154872 gtctcactctgtcacccaggctggagtacagtagtatgatctcggctcactgcaacctctgcctcccaggttcaagcaattctactgtctcagcctcccgagtagctggtaatacaggcgcccaccaccacacgcagctaatttttgtattttcagtagagacggggtttcaccatattggccaggatagtctcaaactcctaaactcaggtgatccgcccgcctcggccacccaaagtgctgggattacaggcatgagccactgcgcctggtcagccatttcaatattctatcaaagtttcccctgaataggacatttccctgtgcattgttggctgtttgaggctgtaaagtgtgttttcttgtgtaaagaaatgtgactcaacagtccaaattggtgcaatctccatttttctggttcttgtatagcccttgaagcattgacatctacccctggttgaacataacccaatccagagtcagtgacttccctgtcaagatccattggcagctcctctggggttgctggcatcagtctggcttgccagctatgaatgatcaaagattcccactagagaatctgtcacagagctgcctctgtctgttttCTtgaccaaaagtcaaaacagacagtacgagaaatgagataaattaccaaaattgtgaacacgagag--agtatcactaatgacactttagaagttaaaaaacattataagttaatactctgaaaaacctgaagccaatcagttagaccacttag
i gorGor5.CYUI01015250v1       C 0 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2841918 8097 -   3067355 I
e chlSab2.chr17                29327342 865 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macNem1.NW_012012100v1         120150 871 +   1495729 I
e macFas5.chr4_KE145577_random   128827 325 +    231697 I
e rheMac8.chr4                 30509013 420 + 172585720 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=15526.000000
s hg38.chr6_GL000254v2_alt      1069985 27 +   4827813 ataaaatggacagatttatacaaagat
s panTro5.chr6                 30035640 27 + 175400573 ataaaatggacagatttatacaaagat
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30266283 27 + 173848474 ataaaatggacagatttatacaaagat
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6074744 27 +   6154872 ataaaatggacagatttatacaaagat
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random   129152 22 +    231697 ataaaataaaCAAG---AAAtaaaa--
i macFas5.chr4_KE145577_random I 325 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2841918 8097 -   3067355 I
e chlSab2.chr17                29327342 865 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macNem1.NW_012012100v1         120150 871 +   1495729 I
e rheMac8.chr4                 30509013 420 + 172585720 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=26214.000000
s hg38.chr6_GL000254v2_alt      1070012 19 +   4827813 agaaattgctgaaactgac
s panTro5.chr6                 30035667 19 + 175400573 agaaattgctgaaactgac
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30266310 19 + 173848474 agaaattgctgaaactgac
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6074771 19 +   6154872 agaaattgctgaaactgac
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random   129174 19 +    231697 agaaaatttcaaaactgca
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1         121021 19 +   1495729 agaaattgccaaaactgca
i macNem1.NW_012012100v1       I 871 C 0
s chlSab2.chr17                29328207 19 -  71996105 agaaattgccaaaactgca
i chlSab2.chr17                I 865 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2841918 8097 -   3067355 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e rheMac8.chr4                 30509013 420 + 172585720 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=1429050.000000
s hg38.chr6_GL000254v2_alt      1070031 613 +   4827813 tcaaaaataaatagaaaatctgaagagaactgtacactaagacagtaattttaaaaccttctcacaaagaaatgccaaagcccagatatcttcactggtgaattctatcaaatatttcaaaagctctttcagacaagaagagaggaggcaagactttctagctcatttacagaactgacattaccctaatatcaaagtcagagcaagactgacaagaaaagaataccatagaccagtgtcaccaataaacataaatgaaaacatccttaacaaacattggcagacaatagaaagccacgtaaaaaaggattacattccatgaccagtgggattcatcccaggaatatatggctggattaacaattagaaatcaattaatggaatgcactgtagtaagggaataaaagacataattatctcaaaagatacagaagaaacagttgacaaaaatgttaacaccactcatgttcataagtttcaacaaaataggaatggaggggaccttcctcaccctgataaagggcatctataaaaaacccacaactaaaatcatgcttgctgaagaaagactgaatgcttttctcctaagatggagatcaatgcaaggatgtcc
s panTro5.chr6                 30035686 613 + 175400573 taaaaaataaatagaaaatctgaagagaactgtacactaagacagtaattttaaaaccttctcacaaagaaatgccaaagcccagatatcttcactggtgaattctatcaaatatttcaaaagctctttcagacaagaagagaggagggaagactttctagctcatttacagaactgacattaccctaatatcaaagtcagagcaagactgacaagaaaagaataccatagaccagtgtcaccaataaacataaatgaaaacatccttaacaaacattggcagacaatagaaagccatgtaaaaaaggattacattccatgaccaatgggattcatcccaggaatatatggttggattaacaattagaaatcaattaatggaatgcactgtagtaatggaataaaagacataattatctcaaaagatacagaagaaacagttgacaaaaatgttaacaccactcatgtccataagtttcgacaaaataggaatggaggggaccttcctcaccctgataaagggcatctataaaaaacccacaactaaaatcatgcttactgaagaaagactgaatgcttttctcctaagatggagatcaatgcaaggatgtcc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30266329 613 + 173848474 taaaaaataaatagaaaatctgaagagaactgtacactaagacagtaattttaaaaccttctcacaaagaaatgccaaagcccagatatcttcactggtgaattctatcaaatatttcaaaagctctttcagacaagaagagaggagggaagactttctagctcatttacagaactgacattaccctaatatcaaagtcagagcaagactgacaagaaaagaataccatagaccagtgtcaccaataaacataaatgaaaacatccttaacaaacattggcagacaacagaaagccatgtaaaaaaggattacattccatgaccaatgggattcatcccaggaatatatggttggattaacaattagaaatcaattaatggaatgcactgtagtaatggaataaaagacataattatctcaaaagatacagaagaaacagttgacaaaaatgttaacaccactcatgtccataagtttcgacaaaataggaatggaggggaccttcctcaccctgataaagggcatctataaaaaacccacaactaaaatcatgcttactgaagaaagactgaatgcttttctcctaagatggagatcaatgcaaggatgtcc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6074790 613 +   6154872 tcaaaaataaatagaaaatctgaagagaactgtacactaacacagtaattttaaaaccttctcacaaagaaatgccaaagcccagatatcttcactggtgaattctatcaaatatttcaaaagctttttcagacaagaagagaggagggaagactttctagctcatttacagaactgacattaccctaatatcaaagtcagagcaagactgacaagaaaagaataccatagaccagtgtcaccaataaacataaatgaaaacatccttaacaaacattggcagacaatagaaagccacgtaataaaggattacattccatgaccaatgggattcatcccaggaatatatggttggattaacaattagaaatcaattaatggaatgcactgtagtaatggaataaaagacataattatctcaaaagatacagaagaaacagttgacaaaaatgttaacaccactcatgtccataagtttcgacaaaataagaatggaggggaccttcctcaccctgataaagggcatctataaaaaacccacaactaaaatcatgcttactgaagaaagactgaatgcttttctcctaagatggagatcaatgcaaggatgtcc
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30509433 612 + 172585720 tcaaaagtaaagagaaaatctgaatagaactgtacactaagtcagtaatttaaaaaccttctcacaaggaaatgccaaaacccaaatatcttcactggtgaattctatcaaatatttcaaaagctctgtcagacaagaagagaggagggaagactttccagcgcatttacagaactggcattaccctaatatcaaagtcagagcaagactcacaagaaaagaataccagagaccagtatcagcaataaacacaaatgaaaatgtcctcaacaaacactggcagacgataaaatgccacataaaaaaggattatactccatgaccaatgagattcatcccaggaaaataaggttggattaat-atttgaaatcaatgaatggaaagcactgtattaatgaagtaaaagatataattatctcaaaagatgcagaagaaacagttgacaggtatgttaacaccattcatgtttgtaagtttcaacaaaacaggaatggaggggaccttcctcactctgataaagggcatctataaaacacccacagctaaaatcatgcttaatgaagaaagactgaatgcttttctcctaagatacggatcaatgcaaggacgtcc
i rheMac8.chr4                 I 420 I 25
s macFas5.chr4_KE145577_random   129193 612 +    231697 tcaaaagtaaagagaaaatctgaatagaactgtacactaagtcagtaatttaaaaaccttctcacaaggaaatgccaaaacccaaatatcttcactggtgaattctatcaaatatttcaaaagctctgtcagacaagaagagaggagggaagactttccagcgcatttacagaactggcattaccctaatatcaaagtcagagcaagactcacaagaaaagaataccagagaccagtatcagcaataaacacaaatgaaaatgtcctcaacaaacactggcagacgataaaatgccacataaaaaaggattatactccatgaccaatgagattcatcccaggaaaataaggttggattaat-atttgaaatcaatgaatggaaagcactgtattaatgaagtaaaagatataattatctcaaaagatgcagaagaaacagttgacaggtatgttaacaccattcatgtttgtaagtttcaacaaaataggaatggaggggaccttcctcactctgataaagggcatctataaaacacccacagctaaaatcatgcttaatgaagaaagactgaatgcttttctcctaagatacggatcaatgcaaggacgtcc
i macFas5.chr4_KE145577_random C 0 I 7
s macNem1.NW_012012100v1         121040 612 +   1495729 tcaaaagtaaagagaaaatctgaatagaactgtacactaagtcagtaatttaaaagccttctcacaaggaaatgccaaaacccaaatatcttcactggtgaattctatcaaatatttcaaaagctctgtcagacaagaagagaggagggaagattttccagctcatttacagaactggcattaccctcatatcaaagtcagaccaagactcacaggaaaagaataccagagaccagtatcagcaataaagacaaatgacaatgtcctcaacaaacattggcagacaataaaatgccacataaaaaaggattatactccatgaccaatgagattcatcccaggaaaataaggttggattaat-atttgaaatcaatgaatggaaagcactgtattattgaagtaaaagacataattatcccaaaagatgcagaaggaacagttgacaggtatgttaacaccactaatgttcgtaagtttcaacaaaacaggaatggaggggaccttcctcactctgataaagggcatctataaaaaactcacagctaaaatcatgcttaatgaagaaagactgaatgcttttctcctaagatagggatcagtgcaaggatgtcc
i macNem1.NW_012012100v1       C 0 I 25
s chlSab2.chr17                29328226 612 -  71996105 tcaaaagcaaagacaaaatctgaatagaactgtacactaagtcagtaatttaaaaagcttctcacaaggaagtgccaaaacccaaatatcttcactggtgaattctatcaaatatttcaaaagctctgtcagacaagaagagaggagggaagactttccagcgcatttacagaactggcattaccctcatatcaaagtcagagcaagactcacaagaaaagaataccagagaccagtatcagcaataaacacaaatgaaaatgtcctcaacaaacattggcagacaataaaatgtcacataaaaaaggattatactccatgacgaatgagattcatcccaggaaaataaggttggattaat-atttgaaatcaatgaatggaaagcactgtattaatgaagtaaaagacataattatcccaaaagatgcagaagaaacagttgacaggtatgttaacacaactcatgttcgtaagtttcaacaaaacaggaatggaggggaccttcctcactctaataaagggcatctataaaaaacccacagctaaaatcatgcttaatgaagaaagactgaatgcttttctcctaagatggggatcaatgcaaagatgtcc
i chlSab2.chr17                C 0 I 25
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2841918 8097 -   3067355 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=1738.000000
s hg38.chr6_GL000254v2_alt      1070644 7 +   4827813 catcc-aa
s panTro5.chr6                 30036299 8 + 175400573 aatcccaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30266942 8 + 173848474 aatcccaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6075403 8 +   6154872 aatcccaa
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random   129812 7 +    231697 -cacttaa
i macFas5.chr4_KE145577_random I 7 I 11
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2841918 8097 -   3067355 I
e chlSab2.chr17                29328838 25 -  71996105 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e macNem1.NW_012012100v1         121652 25 +   1495729 I
e rheMac8.chr4                 30510045 25 + 172585720 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=508389.000000
s hg38.chr6_GL000254v2_alt      1070651 221 +   4827813 cacttctacttaacattgtactggagattgcagctggtgcaataaggcaaataattaaaagttaaaggcatccagataaaaaggaaaacataaaactctattcacagataacatgaccttgtctgtagaattcacaagcagataaaagcctgctagcactaaaaaatgaatccagaagctcccataggatataaaatcaaattaaa----aattattaacatatt
s panTro5.chr6                 30036307 221 + 175400573 cacttctatttaacattgtactggagattgcagctggtgcaataaggcaaataattaaaagttaaaggcatccagataaaaaggaaaacataaaactctattcacagataacacgaccttgtctgtagaattcacaagcagataaaagcctgctagcactaacaaatgaatccagaagctcccataggatataaaatcaaattaaa----aattattaacatatt
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30266950 221 + 173848474 cacttctatttaacattgtactggagattgcagctggtgcaataaggcaaataattaaaagttaaaggcatccagataaaaaggaaaacataaaactctattcacagataacacgaccttgtctgtagaattcacaagcagataaaagcctgctagcactaacaaatgaatccagaagctcccataggatataaaatcaaattaaa----aattattaacatatt
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6075411 221 +   6154872 cacttctatttaacattgtactggagattgcagctggtgcaataaggcaaataattaaaagttaaaggcatccagataaaaaggaaaacataaaactctattcacagataacatgaccttgtctgtagaattcacaggcagataaaagcctgctagcactaacaaatgaatccagaagctcccataggatataaaatcaaattaaa----aattattaacatatt
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30510070 225 + 172585720 cacttccacttaacgttgtactggagatagtagccagtgcactaaggcagaaaattaaaaattaaaggcatccagataaaatggaaaacataaaactctattcacagataacatgaccttgtctgtagaattcacaagcagataaaagtctgctagcactaagaaatgaatccagaagggcccatagtatataaaatcaatataaaaattaattattaacatatt
i rheMac8.chr4                 I 25 C 0
s macFas5.chr4_KE145577_random   129830 225 +    231697 cacttccacttaacgttgtactggagatagtagccagtgcgctaaggcagaaaattaaaaattaaaggcatccagataaaatggaaaacataaaactctattcacagataacatgaccttgtctgtagaattcacaagcagataaaagtctgctagcactaagaaatgaatccagaagggcccatagtatataaaatcaatataaaaattaattattaacatatt
i macFas5.chr4_KE145577_random I 11 C 0
s macNem1.NW_012012100v1         121677 225 +   1495729 cacttccatttaacattgtactagagatagtagccagtgcactaaggcagaaaattaaaaactaaaggcatccagataaaaaggaaaacataaaactctattcacagataacctgaccttgtctgtagaattcacaagcagataaaagcctgctagcactaagaaatgaatccagaagggcccataggatataaaatcaatataaaaattaattatgaatctatt
i macNem1.NW_012012100v1       I 25 C 0
s chlSab2.chr17                29328863 225 -  71996105 cacttccacttaacattgtactagagatagtagccagtgcactaaggcagaaaattaaaaactaaaggcatccagataaaaaggaaaacacaaaactctattcgcagataacctgaccttgtctgtagaattcataagcagataaaagcctgctagcactaagaaatgaatccagaagggcccatagtatataaaatcaatataaaaattaattattaatatatt
i chlSab2.chr17                I 25 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2841918 8097 -   3067355 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=1337531.000000
s hg38.chr6_GL000254v2_alt      1070872 495 +   4827813 tctctatacaagcaattaaaatctaaactttcctatcacagtagttacaaaaagagagaaataggaataaatttaggaagacagcagagtttgtt----gaaaactacaaaacattactgagagaaattaaaggtctaaattcatggagagatgcg-gttggaaagctcaataatattgttaagatgacaattctccaccaagagatctataggttcagtacaatctctatcaaaaccccagcaggcattttatggaaaattgacaatttaatcctaaaaatgtatgtgaaaatgcagaggatgcagaaaagccaacgcaaatttg---aa-------aaaaaatggaatgtcatataaaactacaataatccagacagtgtgaaagcgagagacacagagattaatga----------acagaagtgagaatctagaaagacattcttaca--------tttttttgtcaattgatcttcaatgaagttgcataggtaatatgatgtgacacttatcgccatataaa
s panTro5.chr6                 30036528 499 + 175400573 tctctatacaagcaattaaaatctaaactttcctatcacagtagttacaaaaagagagaaataggaataaatttaggaagagagcagagtttgttcgctgaaaactacaaaacattactgagagaaattaaaggtctaaattcatggagagatgcg-gttggaaagctcaataatattgttaagatggcaattctccaccaagagatctataggttcagtacaatctctatcaaaaccccagcaggcattttatggaaaattgacaatttaatcctaaaaatgtatgtgaaaatgcagaggatgcagaaaagccaacgcaaatttg---aa-------aaaaaatggaatgtcatataaaactacaataatccagacagtgtgaaagcgagagacacagagatcaatga----------acagaagtgagaatctagaaagacattcttaca--------tttttttgtcaattgatcttcaatgaagttgcataggtaatatgatgtgacacttatcgccatataaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30267171 499 + 173848474 tctctatacaagcaattaaaatctaaactttcctatcacagtagttacaaaaagagagaaataggaataaatttaggaagagagcagagtttgttcgctgaaaactacaaaacattactgagagaaattaaaggtctaaattcatggagagatgcg-gttggaaagctcaataatattgttaagatggcaattctccaccaagagatctataggttcagtacaatctctatcaaaaccccagcaggcattttatggaaaattgacaatttaatcctaaaaatgtatgtgaaaatgcagaggatgcagaaaagccaacgcaaatttg---aa-------aaaaaatggaatgtcatataaaactacaataatccagacagtgtgaaagcgagagacacagagatcaatga----------acagaagtgagaatctagaaagacattcttaca--------tttttttgtcaattgatcttcaatgaagttgcataggtaatatgatgtgacacttatcgccatataaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6075632 499 +   6154872 tctctatacaagcaatgaaaatctaaactttcctatcacagtagttacaaaaagagagaaataggaataaatttaggaagagagcagagtttgttcgctgaaaactacaaaacattactgagagaaattaaaggtctaaattcatggagagatgcg-gttggaaagctcaataatattgttaagatggcaattctccaccaagagatctataggttcagtacaatctctatcaaaaccccagcaggcattttatggaaaattgacaatttaatcctaaaaatgtatgtgaaaatgcagaggatgcagaaaagccaacgcaaatttg---aa-------aaaaaatggaatgtcatataaaactacaataatccagacagtgtgaaagcgagagacacagagattaatga----------acagaagtgagaatctagaaagacattcttaca--------tttttttgtcaattgatcttcaatgaagttgcataggtaatatgatgtaacactcattgccatagaaa
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30510295 520 + 172585720 tatctatacaagcaatgaaaatctcaactttcctatcacagtagttaccaaaagggcgaaatagaaataaatttaggaaaggaccagtgtttgttcactgaaaataaaaaaacattactgagagaaattaaaggtctaaataaatggagagatgtg-gttggaaagctcaataatattgttaagatggcagttctcccctaatagatctataggttcaacacaattggtatcaaaattccagcagatatttcatagaaaactgacaaaataagcctaaaaatgtatatgaaaatgcaagggacacagaagtgccaacacaaatttgaacaa-------aaaaaacggaatgtcatataaaactataaaaatctggacagtatggaactgagagacatagagatcaatgaacagaaaggaacagaagtgaaaatctagaaagaccttcttacaaatttttttttttttgtcaattgattttcaatgaagttgcataggtaattcaatgtgacacttaacaccatataaa
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   130055 520 +    231697 tatctatacaagcaatgaaaatctcaactttcctatcacagtagttaccaaaagggcgaaatagaaataaatttaggaaaggaccagtgtttgttcactgaaaataaaaaaacattactgagagaaattaaaggtctaaataaatggagagatgtg-gttggaaagctcaataatattgttaagatggcagttctcccctaatagatctataggttcaacacaattggtatcaaaattccagcagatatttcatagaaaactgacaaaataagcctaaaaatgtatatgaaaatgcaagggacacagaagtgccaacacaaatttgaacaa-------aaaaaacggaatgtcatataaaactataaaaatctggacagtatggaactgagagacatagagatcaatgaacagaaaggaacagaagtgaaaatctagaaagaccttcttacaaatttttttttttttgtcaattgattttcaatgaagttgcataggtaattcaatgtgacacttaacaccatataaa
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1         121902 516 +   1495729 tatctatacaagcaatgaaaatctcaactttcctatcacagtagttacaaaaagggtgaaacaggaatacatttaggaagagagcagtgtttgttcactgaaaat-gaaaaacattactaagagaaattaaaggtctaaataaacggagcgatgtgagttggaatgcttcataatattgttaagatggcaattctcccctaatagatctataggttcaacacaattgctatcaaaatcccagcaggcgttttatagaaaattgacaaaataagcctaaaaatgtatatgaaaatgcagaggatgcagaagagccaacacaaatttg---aa-------aaaaaaatgaatgtcatataaaactataaaaatccagacagtatgaaactgagagacatagagatcgatgaactgaaatgcacagaaatgaaaatctagaaagacattctt-ttttttttttttttttggtcatacgattttcagtgaagttgcataggtaatgcaatatgatacttaataccatataaa
i macNem1.NW_012012100v1       C 0 C 0
s chlSab2.chr17                29329088 521 -  71996105 tatctatacaagcaatgaaaatctcaactttcctatcccagtagtttcaaaaagtgtgaaataggaataaatttgggaagagagcagtgtttcttcactaaaaat-aaaaaacattactaagagaaattaaaggtctaaataaatggagaggtgcgagttggaatgctccataatattgttaagatggcaattctcccctaatagatctataggttcaacacaattgctatcaaaatcccagcaggcattttatagaaaattgacaaaataagcctaaaaacgtatatgaaaatgcagaggatgcagaagagccaacacaaatttgaaaaaaaaacccaaaaaacggaatgtcatgtaaaactataaaaatccaaacagtatgaaactgagagacatagagatcaatgaacagaaatgaacagaagtgaaaatctagaaagacattcttaca------tttttttttgtcaatcgattttcaatgaagttgcataggtaatgcaatgtgacacttaacaccatataaa
i chlSab2.chr17                C 0 N 0
s colAng1.NW_012115566v1        2850015 500 -   3067355 tctCCATACTAGCAATGAAAATCTAAACTttcctatcacagtagttacaaaaagagtgaaataggaataaatttaggaagagagcagtgtttgtttgctgaaaagtacaaaacattactgagagaaattagcagtctaaataaatggagagatgcaggttggaagtctcaataatactgttaagatggcaattctcaaccaataggtctacaggttcaacacaatctctattaaaatctcagcaggcactttatataacaatgactaaataatcctcaaaatatatatgaaaatgcctatgatgcagaagagccaacacaaatt--aaaaa-------aaaaaaaagaatgtcatataaaagtacaataatccaaacagagtgaaactgagagacatagagatcaatga----------gcagaagtgagaatctagaaagacattcttac---------tttttttgtcaattgattttcaacgaagttgcatagataatacaatgtgacacttaacaccatataaa
i colAng1.NW_012115566v1       I 8097 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e cerAty1.NW_012002535v1          22614 1246 -    863181 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=1814118.000000
s hg38.chr6_GL000254v2_alt      1071367 424 +   4827813 atataagctcaaacaaattagagacctaaacagctaaaatttataagttaaaaccataaaatttctaaaagaaaatataggagaaaatttttgtgacattgagtagttaggcaaaagattcttacat-aaaatacaaaaaa-catgatctacagatg----------aaaaa--aaagtgagagacaaattgggcttagtt-aaaatttaaaacttaagtgctccaaaagacaatattgagaaaatgagaagacaagccgtagattgagagaaaatatttcacaatttatcacaaattacatctgtgatgaagaacatgtatccagaatatgtgaaaagttcttaaactcaatgtaagaagatgagcaactcaactaaaaatgagcaaaac--------atgctcaactgacttttacaaaagcacaaaagcaattcaatgaaggaa
s panTro5.chr6                 30037027 425 + 175400573 atataagctcaaacaaattagagacctaaacagctaaaatttatcagttaaaaccataaaatttctaaaagaaaatataggagaaaatttttgtgacattgagtagttaggcaaaagattcttacat-aaaatacaaaaaaacatgatctacggatg----------aaaaa--aaagtgagagacaaattgggcttagtt-aaaatttaaaacttaagtgctccaaaagacaatattgagaaaatgagaagacaagccgtagattgagagaaaatatttcacaatttatcacaaattacatctgtgatgaagaacatgtatccagaatatgtgaaaagttcttaaactcaatgtaagaagatgagcaactcaactaaaaatgagcaaaac--------atgctcaactgacttttacaaaagcacaaaagcaattcaatgaaggaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30267670 424 + 173848474 atataagctcaaacaaattagagacctaaacagctaaaatttataagttaaaaccataaaatttctaaaagaaaatataggagaaaatttttgtgacattgagtagttaggcaaaaggttcttacat-aaaatacaaaaaa-catgatctacggatg----------aaaaa--aaagtgagagacaaattgggcttagtt-aaaatttaaaacttaagtgctccaaaagacaatattgagaaaatgagaagacaagccgtagattgagagaaaatatttcacaatttatcacaaattacatctgtgatgaagaacatgtatccagaatatgtgaaaagttcttaaactcaatgtaagaagatgagcaactcaactaaaaatgagcaaaac--------atgctcaactgacttttacaaaagcacaaaagcaattcaatgaaggaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6076131 417 +   6154872 atataagctcaaacaaattagagacctaaacagctaaaatttataagttaaaaccataaaatttctaaaagaaaatataggagaaaatttttgtgacgttgagtagttaggcaaaagattcttacat-aaaatacaaaaaa-catgatctacagatg----------aaaaa--gaagtgagagacaaattgggcttagttaaaaatttaaaacttaagtgctccaaaagacaatattgagaaaatgagaagacaatccgtagattgagagaaaatatttcacaatttatcacaaattacatctgtgatgaagaacatgtatccagaatatgtgaaaagttcttaaactcaatgtaagaagatgagcaactcaactaaaaatgagcaaaac--------atgctcaactgacttttaca-------aaaagcaattcaatgaa-gaa
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30510815 440 + 172585720 atatcagctccaacaaattagagacctatagagctaaaatttatgagttaaaactataaaatttctaaaagaaaatgtaagagaaaatttttttgactttgggtagttaggcaaaagattcttagataaaaataccaaaag-catgatctacaagtg---aaaaaaaaaaaa--aaagagatagagaaattgggcttagtt-aaaatttaaaacttgagtgctccaaaagacgtaattgagaaaatgagaagacaagccatagactgggagtaaatatttcacaatttattacaaatcacatttgcgatgaagaacatgtatccagaacatgtgacaagttcttaaactcaatgtaagaagacaagcaactcaactgaaagtgagcaaaacatacaaatatgctcaactgacttttacaaaagcacaaaagcaattcaatgaaggaa
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   130575 443 +    231697 atatcagctccaacaaattagagacctatagagctaaaatttatgagttaaaactataaaatttctaaaagaaaatgtaagagaaaatttttttgactttgggtagttaggcaaaatattcttagataaaaataccaaaag-catgatctacaagtgaaaaaaaaaaaaaag--agagagatagagaaattgggcttagtt-aaaatttaaaacttgagtgctccaaaagacgtaattgagaaaatgagaagacaagccatagactgggagtaaatatttcacaatttattacaaattacatttgcgatgaagaacatgtatccagaatatgtgacaagttcttaaactcaatgtaagaagacaagcaactcaactgaaagtgagcaaaacatacaaatatgctcaactgacttttacaaaagcacaaaagcaattcaatgaaggaa
i macFas5.chr4_KE145577_random C 0 C 0
s macNem1.NW_012012100v1         122418 434 +   1495729 atatcagctcaaacaaattagagacctatagagctaaaatttatgagttaaaactataaaatttctaaacgaaaatatagaaggaaatttttgtgactttgggtagttaggcaaaagattcttagataaaaataccaaaag-catgagctacaagtg---------aaaaag--agagagagagagagattgggcttagtt-aaaatttaaaacttgagtgctccaaaagacatcattgaaaaaatgagaagacaagccatagactgggagtaaatatttcacaatttatcacaaattacatttgtgatgaagaacacgtatccagaatatgtgacaagttcttaaactcaatgtaagaagacaagcaactcaactgaaagtgagcaaaacatacaaatatgctcaactgacttttacaaaagaacaaaagcaattcaaagaaggaa
i macNem1.NW_012012100v1       C 0 I 24049
s cerAty1.NW_012002535v1          23860 432 -    863181 atataagctcaaacaaattagagacctaaacagctaaaatttatgagttaaaactattaaatttctaaaagaaaatataggagaaaatttttgtgacattgggtagtcatgcaaaagattcttagat-aaaataccaaaaa-catgatctacaaatg----------aaaaa--agagagagagagaaattgggcttagtt-aaaatttaaaacttaagtgcttcaaaagacattattgagaaaatgagaagacaagccatagattgagggaaaaattttcacagttgatcacaaattacatttgtgatgaagaacatgtatccggaatataagacaagttcttaaactcaatgtatgaagacgagcaactcaaccaaaaatgagcaaatcatacaaatatgcacaactgacttttacaaaagcacaaaagcaattcaatgaaggaa
i cerAty1.NW_012002535v1       I 1246 C 0
s chlSab2.chr17                29206581 434 -  71996105 atataagctcaaacaaattagagacctaaacagctaaaatttatgagttaaaactatcaaatttctgaaagaaaatataggagaaaatttttgtgacattgggtagtcaggcaaaagattcttagat-aaaataccaaaaa-catgatctacaaatg----------aaaaaagagagagagagagaaattgggcttagtt-aaaatttaaaacttaagtgcttcaaaagacattattgagaaaatgagaagacaagccatagattgagggaaaaattttcacagtttatcacaaattacatttgtgatgaagaacatgtatccagaatataagacaagttcctaaactcaatgtacgaagaagagcaactcaaccaaaaatgagcaaatcatacaaatatacacaactgacttctacaaaagcacaaaagcaattcaatgaaggaa
i chlSab2.chr17                N 0 C 0
s manLeu1.NW_012101121v1          14608 432 +    273075 atataagctcaaacaaattagagacctaaacagctaaaatttatgagttaaaactattaaatttctaaaagaaaatataggagaaaatttttgtgacattgggtagtcatgcaaaagattcttagat-aaaataccaaaaa-catgatctacaaatg----------aaaaa--agagagagagagaaattgggcttagtt-aaaatttaaaacttaagtgcttcaaaagacattattgagaaaatgagaagacaagccatagattgagggaaaaattttcacagttgatcacaaattacatttgtgatgaagaacatgtatccggaatataagacaagttcttaaactcaatgtatgaagacgagcaactcaaccaaaaatgagcaaatcatacaaatatgcacaactgacttttacaaaagcacaaaagcaattcaatgaaggaa
i manLeu1.NW_012101121v1       N 0 C 0
s colAng1.NW_012115566v1        2850515 412 -   3067355 acatcagctcaaacaaattagagacctaaagagctaaaatttattagtgaagactgtaacatttctaaaagaaaatataggagaaaatttttgtgactttgggtagttagacaaaagattcttagat-aaaatatcaaaag-catgatctacaaatg-----------aaaa--acagagagagagaaattgggcttagtt-aaaatttaaaacttcagtgcttcaaaagacatctt-------------------gccatagactggaagaaaatatttcacaatttaacacaaattacatttgtgatgaagaacctgtatccagaatatgggacaagttcttaaactcaatttaagaagacaagcaactcaactaaaaatgagcaaaAcacacaaatatgctcaactgacttttacaaaagcacaatagcaattcagtgaaggaa
i colAng1.NW_012115566v1       C 0 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=1336462.000000
s hg38.chr6_GL000254v2_alt      1071791 385 +   4827813 ggagagctttcccatcaaatggtgatggaacaactggacaaccacagtggaaaaaaaataacctgagccaaaacctcatgcttcatac-aaaaataactcaaaatgagtcacaagctttcatgtaaagcACAGAGTTAAAATGGCaaacattgagccaggtgtggtatcacaggcctgtactctcagctactcaggaagctgaggtgggaggatcccttgagcccaggagttcaaggcCAGCCTAGGCAAGAA-----TTTTTTTTCTAAAATAAATAAtaaat----ttaaatttttaaattacaaaccttttaagaaaaagtcatcagagctaagactggacaaagagttcttagacataacaccaaaagtatgatccat------aaaagttaataaa
s panTro5.chr6                 30037452 385 + 175400573 ggagagctttcccatcaaatggtgatggaacaactggacaaccacagtggaaaaaaaataacctgagccaaaacctcatgcttcatac-aaaaataactcaaaatgagtcacaagctttcatgtaaagcACAGAGTTAAAATGGCaaacattgagccaggtgtggtatcacaggcctgtactctcagctactcaggaagctgaggtgggaggatcccttgagcccaggagttcaaggcCAGCCTAGGCAAGAA-----TTTTTTTTCTAAAACAAATAAtaaat----ttaaatttttaaattacaaaccttttaagaaaaagtcatcagagctaagactggacaaagagttcttagacataacaccaaaagtatgatccat------aaaagttaataaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30268094 385 + 173848474 ggagagctttcccatcaaatggtgatggaacaactggacaaccacagtggaaaaaaaataacctgagccaaaacctcatgcttcatac-aaaaataactcaaaatgagtcacaagctttcatgtaaagcACAGAGTTAAAATGGCaaacattgagccaggtgtggtatcacaggcctgtactctcagctactcaggaagctgaggtgggaggatcccttgagcccaggagttcaaggcCAGCCTAGGCAAGAA-----TTTTTTTTCTAAAATAAATAAtaaat----ttaaatttttaaattacaaaccttttaagaaaaagtcatcagagctaagactggacaaagagttcttagacataacaccaaaagtatgatccat------aaaagttaataaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6076548 385 +   6154872 ggagagctttcccatcaaatggtgatggaacaactggacaaccacagtggaaaaaaaatagcctgagccaaaacctcatgcttcacac-aaaaataactcaaaatgagtcacaagctttcatgtaaagcACAGAGTTAAAATGGCaaacattgagccaggtgtggtatcacaggcctgtactctcagctactcaggaagctgaggtgggaggatcccttgagcccaggagttcaaggcCAGCCTAAGCAAGAA-----TTTTTTTTCTAAAATAAATAAtaaat----ttaaatttttaaattacaaaccttttaagaaaaagtcatcagagctaagactggacaaagagttcttagacataacaccaaaagtatgatccat------aaaagttaataaa
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30511255 388 + 172585720 ggagagcttgcccaacaaacggtgctggagcaactggacaaccgcagtggaaaa-----accctgagcccaaatctcacactttatacaaaaaataactcaaaatgaatcacaagctttaatgcaagacACAGAGTTaaaatggcaaacactgagctgggcctggtgtcacagacctgtactctcagctactcgggaggctgaggtgggaggatccctggagcccaggagttcaaggACAGCCTAGGCCA-AA--ATTTTTTTTTTCTAAAATAAATAATaaat----taaaaactttaaattac-aacctttgaagaaaaagtcatcagaaataagactggacaaagagttcttagacataacaccaaaagtatgatccataaaagaaaaagttaataaa
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   131018 388 +    231697 ggagagcttgcccaacaaacggtgctggagcaactggacaaccgcagtggaaaa-----accctgagcccaaatctcacactttatacaaaaaataactcaaaatgaatcacaagctttaatgcaagacACAGAGTTaaaatggcaaacactgagctgggcctggtgtcacagacctgtactctcagctactcgggaggctgaggtgggaggatccctggagcccaggagttcaaggACAGCCTAGGCCA-AA--TTTTTTTTTTTCTAAAATAAATAATaaat----taaaaactttaaattac-aacctttgaagaaaaagtcatcagaaataagactggacaaagagttcttagacataacaccaaaagtatgatccataaaagaaaaagttaataaa
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          24292 393 -    863181 ggagcgctttcccaatgaatggtgctggaacaactggacaaccacagtggaaaa-aaataacctgagcccaaacctcatgctttatgcaaaaaataactcaaaatgaatcaccagctttaatgtaaaacACAGAGTTAAAATGGCaaacattgagccaggtgtggtatcacaggcctgtactctcagctactcaggaggctgaggtgggaggatcccttgagcccaggagttcaaggcCAGCCTAGGCAAGAA--TTTTTTTTTTTCTAAAATAAATAAtaaat----ttaaaacttaaaattacaaaccttttaagagaaagtcatccgaactaagactggacaaagagttcttagacataacaccaagagtatgttccatcaaa-aaaaagttaacaaa
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29207015 394 -  71996105 ggagcgctttcccaacgaatggtgctggaacaactagacaaccacagtggaaaa-aaataacctgagcccaaacttcatgctttatacaaaaaataactcaaaatgagtcacaagctttaatgtaaaacACAGAGTTaaaatggcaaacattgagccaggtgtggtatcacaggcctgtactctcagctactcgggaggctgaggtaggaggatcccttgagcccaggagttcaaggcCAGCCTAGGCAAGAATTTTTTTTTTTTTCTAAAATAAACAAtaagt----ttaaaacttgaaattacaaaccttttaagaaaaagtcatccaaactaagactggac--agagttcttagacttaacaccaagagtatgttccatcaaaaaaaaagttaacaaa
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          15040 393 +    273075 ggagcgctttcccaatgaatggtgctggaacaactggacaaccacagtggaaaa-aaataacctgagcccaaacctcatgctttatacaaaaaataactcaaaatgaatcaccagctttaatgtaaaacACAGAGTTAAAATGGCaaacattgagccaggtgtggtatcacaggcctgtactctcagctactcaggaggctgaggtgggaggatcccttgagcccaggagttcaaggcCAGCCTAGGCAAGAA--TTTTTTTTTTTCTAAAATAAATAAtaaat----ttaaaacttaaaattacaaaccttttaagagaaagtcatccgaactaagactggacaaagagttcttagacataacaccaagagtatgttccatc-aaaaaaaagttaacaaa
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2850927 387 -   3067355 ggagagcttttccatcaaattttgctggagcaactgaacaaccacagcggagaa-aaataacctcagcccaaacctcacactttatacaaaaaataactcaaaatgaatcacaagctttaatgtaaaacacaaagttaaaattacaagcattgagccaggcatggtgtcacaggcctgtactctcaactatgggagaggctgaggtgggaggatccgtcgagcccaggagttcaaggtcagcctaggcaa-ga-----ttttatttctaaaacaaacaataaataaagtaaaaaatttaaattac-aaccttttaagaaaaagtcatcagaactaagactggacaaagagttcttagacataacaccaaaagtgtgattcataaaagaaaaa------aaa
i colAng1.NW_012115566v1       C 0 I 11
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=74401.000000
s hg38.chr6_GL000254v2_alt      1072176 23 +   4827813 ttggatcttatcaacactaaaaa
s panTro5.chr6                 30037837 23 + 175400573 ttggatcttatcaacactaaaaa
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30268479 23 + 173848474 ttggatcttatcaacactaaaaa
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6076933 23 +   6154872 ttggatcttatcaacactaaaaa
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30511643 23 + 172585720 ttagatcttatcaacattaaaaa
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   131406 23 +    231697 ttggatcttatcaacattaaaaa
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          24685 23 -    863181 ttggatcttatcaacactaaaaa
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29207409 23 -  71996105 ttggatcttatcaacactaaaaa
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          15433 23 +    273075 ttggatcttatcaacactaaaaa
i manLeu1.NW_012101121v1       C 0 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2851314 11 -   3067355 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=269012.000000
s hg38.chr6_GL000254v2_alt      1072199 75 +   4827813 ctgttgttctgtgagagacctatgaagagcataaaaagacaagctacagaatgagagaagatatttgcaggcaac
s panTro5.chr6                 30037860 75 + 175400573 ctgtttttctgtgagagacctatgaagagcataaaaagacaagctacagaatgagagaagatatttgcaggcaac
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30268502 75 + 173848474 ctgtttttctgtgagagacctatgaagagcataaaaagacaagctacagaatgagagaagatatttgcaggcaac
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6076956 75 +   6154872 ctgttgttctgtgagagacctatgaagagcataaaaagacaagctacagaatgagagaagatatttgcaggcaac
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30511666 75 + 172585720 ctgttgctctgtgagagacctgtgaagagcataaaaaagcaagctagagcatgagagaagatatttacagacaac
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   131429 75 +    231697 ctgttgctctgtgagagacctgtgaagagcataaaaaagcaagctacagcatgagagaagatatttacagacaac
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          24708 73 -    863181 ctgttgctctgtgagagacctgtgaagagc--aaaaagacaagctacagaacgagagaagatatttacagacaac
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29207432 74 -  71996105 ctgttgctctatgagagacctgtgaagaac-taaaaagacaagctacagaacgagagaagatatttacagacaac
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          15456 73 +    273075 ctgttgctctgtgagagacctgtgaagagc--aaaaagacaagctacagaacgagagaagatatttacagacaac
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2851325 75 -   3067355 ctgtgactctgtgagagacctatgaagagcataaaaagacaagctacagagtgagagaagatatttgcaaacgac
i colAng1.NW_012115566v1       I 11 I 80566
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=5051030.000000
s hg38.chr6_GL000254v2_alt      1072274 1471 +   4827813 atattctgtaaagac-tgtattcagaatatatgaagaaattttaaaactcaacaataaaaatgaaatccaaatacaaaacaggc-aatgagcaagacacgaacagacaaatttcactgaagaggataaatactgggctaataagcagatgaataggtgctcaacatcattatccagtagg-aaaatacaaattaaaaccacagtgatgagaatggctgaaatacaaaataaaggtagcaacagatgctggcaaggacgcagaggaactgggacactcttatattgctggtagggatgtatttt-aaaatggtacagccgctctggaaatgagtattgcagttttcttcaaaccgaacatgcaatttaccttatgactagcaattgccctcctaggcacttatttcaaacgagggaatactttatgttcacgaaaatcctgtgcacaaatactcttccagctttattcatgatacccccaaacaggaattaatacaactgtctttccgtaggtgagtgAGATCTGCTGGTTGAAATAATAACTGagtc-acacaagtgccctttctcaaggctaccatcctgcttctctgtgcagtaagtgttttatgcatatttcccattttctcacaaagaatattaaacacgtatactcaaggatcaaactttaacccacataaattttttactgctccatcaaagacactcttaaatgggactgcagtttggagccactgcc-tggttctgctaaggtgctgggtgtgttaccgaccttggcatttgcagcacta-tggaaaagtcaacacaatgaaacaggcagatggcatcttggtattactgtgaaaacaagtctgcctccaggactctctgaaggctgctcaggggacACACTTTCAAAATGGCAAAGATCAATTATGGTTCCTAGTGGGACACAACCCCTAGCCTATTCCTATTCAGCACTG------------------------TCTTGCTCTCTATTTTCCCtcattcttccaacttataactgtataaattttcaaatgtgcaaagaagctgaaagaatggtgcagtaaaATTCAAGCTACCACTCTGCCGTATTTGGTTAATATCTCTTTAtatacataaaaggagagtgtgaaatgatggaccatggagacccagaagggtaaggg-ggttggcagttggtgtataat-agaggggtttcttgataggtacaatgtgcttgtctccagtgctggatgctctgaaggccctgactttaccacaa-ccaatatagcaatgtagcaaaattgcacttgtgcctcatgaatatatatgaatctaagaaataaaaaaTAAAATAACATAACATGTTTCTTTATAGATACAGGTAGACATGTTTGTATAGCAtgtgtgtgaatgtg----------------------------------tgtgtgtgcctgtgtgtgtgtgtccacctgtgtgtgtgtttccgtgtAGAGA----GGCAGCACAAATTAAGAGATTAAGATTTTGTGACTGAGCTATTCCAAAG
s panTro5.chr6                 30037935 1470 + 175400573 atattctgtaaagac-tgtattcagaatatatgaagaaattttaaaactcaacaataaaaatgaaatccaaatacaaaacaggc-aatgagaaagacatgaacagaca--tttcactgaagaggataaatactgggctaataagcagatgaataggtgctcaacatcattatccagtaga-aaaatacaaattaaaaccacagcgatgagaatggctgaaatacaaaataaaggtagcaacagatgctggcaaggacgcagaggaactgggacactcttatattgctggtagggatgtatttt-aaaatggtacagccactctggaaatgagtattgcagttttcttcaaaccgaacatgcaatttaccttacgactagcaattgccctcctaggcacttatttcaaacgagggaacactttatgttcacgaaaatcctgtgcacaaatactcttgcagctttattcatgatagccccaaacaggaattaatacaactgtctttccgtaggtgagtggGATCTgctggttgaactcataactgagtc-acacaagtgccctttctcaaggctaccatcctgcttctctgtgcagtaagtgttttatgcatatttcccattttctcacaaagaatattaaacatgtatactcaaggatcaaactttaatcaacataaattttttactgctccatcaaagacattcttaaatggaactgcagtttggagccactgcc-tggttctgctaaggtgctgggtgtgttaccgaccttggcatttgcagcactaatggaaaagtcaacacaatgaaacaggcagatggcatcttggtattactgtgaaaacaagtctgcctccaggactgtctgaaggctgctcaggggacACACTTTCAAAATGGCAAAGATCAATTATGGTTCCTAGTGGGACACAACCCCTAGCCTATTCCTATTCAGCACTG------------------------TCTTGCTCTCTATTTTCCCtcattcttccaacttataactgtataaattttcaaatgtgcaaagaagctgaaagaatggtgcagtaaaATTCAAGTTACCACTCTGCCGTATTTGGTTAATATCTCTTTAtatacataaaaggagagtgtgaaatgatggaccatggagactcagaagggtaaggg-ggttggcagttggtgtataat-agaggggtttcttgatgggtacaatgtgcttgtctccagtgctggatgctctgaaggccctgactttaccacaa-ccaatatagcaatgtagcaaaattgcacttgtgcctcatgaatatatatgaatttaagaaataaaaaaTAAAATAACATAACATGTCTCTTTATAGATACAGGTAGACATGTTTGTATAGCAtgtgtgtgaatgtg----------------------------------tgtgtgtgcctgtgtgtgtgtgtccgcctgtgtgtgtgtgtccgtgtAGAGA----GGCAGCACAAATTAAGAGATTAAGATTTTGTGACTGAGCTATTCCAAAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30268577 1469 + 173848474 atattctgtaaagac-tgtattcagaatatatgaagaaattttaaaactcaacaataaaaatgaaatccaaatacaaaacaggc-aatgagcaagacatgaacagaca--tttcactgaagaggataaatactgggctaataagcagatgaataggtgctcaacatcattatccagtagg-aaaatacaaattaaaaccacagcgatgagaatggctgaaatacaaaataaaggtagcaacagatgctggcaaggacgcagaggaactgggacactcttatattgctggtagggatgtatttt-aaaatggtacagccgctctggaaatgagcattgcagttttcttcaaaccgaacatgcaatttaccttacgactagcaattgccctcctaggcacttatttcaaacgagggaatactttatgttcacgaaaatcctgtgcacaaatactcttgcagctttattcatgatagccccaaacaggaattaatacaactgtctttccgtaggtgagtggGATCTgctggttgaactcataactgagtc-acacaagtgccctttctcaaggctaccatcctgcttctctgtgcagtaagtgtttt-tgcatatttcccattttctcacaaagaatattaaagacgtatactcaaggatcaaactttaatccacataaattttttactgcaccatcaaagacactcttaaatggaactgcagtttggagccactgcc-tggttctgctaaggtgctgggtgtgttaccgatcttggcatttacagctctaatggaaaagtcaacacaatgaaacaggcagatggcatcttggtattactgtgaaaacaagtctgcctccaggactctctgaaggctgctcaggggacACACTTTCAAAATGGCAAAGATCAATTATGGTTCCTAGTGGGACACAACCCCTAGCCTATTCCTATTCAGCACTG------------------------TCTTGCTCTCTATTTTCCCtcattcttccaacttataactgtataaattttcaaatgtgcaaagaagctgaaagaatggtgcagtaaaATTCAAGTTACCACTCTGCCGTATTTGGTTAATATCTCTTTAtatacataaaaggagagtgtgaaatgatggaccatggagactcagaagggtaaggg-ggttggcagttggtgtataat-agaggggtttcttgatgggtacaatgtgcttgtctccagtgctggatgctctgaaggccctgactttaccacaa-ccaatatagcaatgtagcaaaattgcacttgtgcctcatgaatatatatgaatttaagaaataaaaaaTAAAATAACATAACATGTCTCTTTATAGATACAGGTAGACATGTTTGTATAGCAtgtgtgtgaatgtg----------------------------------tgcgtgtgcctgtgtgtgtgtgtccgcctgtgtgtgtgtgtccgtgtAGAGA----GGCAGCACAAATTAAGAGATTAAGATTTTGTGACTGAGCTATTCCAAAG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6077031 1467 +   6154872 atattctgtaaagac-tgtattcagaatatatgaagaaattttaaaactcaacaataaaaatgaaatccaaatacaaaacaggcaaatgagcaagacatgaacagaca--tttcactgaagaggataaatactgggctaataagcagatgaataggtgctcaacatcattatccagtagg-aaaatacaaattaaaaccacagtgatgagaatggctgaaatacaaaataaaggtagcaacagatgctggcaaggacgcagaggaagtgggacactcttatattgctggtagggatgtatttt-aaaatggtacagccactctggaaatgagtattgcagttttcttcaaaccgaacatgcaatttaccttatgactagcaattgccctcctaggcacttatttcaaacgagggaatactttatgttcacgaaaatcctgtgcacaaatactcttgcagctttattcatgatacccccaaacaggaattaatacaactgtctttctgtaggtgagtgAGATCCgctggttgaaatcataactgagtc-acacaagtgccctttctcaaggctaccatcctgcttctctgtgcagtaagtgttttatgcatatttcccattttctcacaaagaatattaaagatgtatactcaaggatcaaactttaatcaacataaattttttactgctccatcaaagacattcttaaatggaactgcagtttggagccactgcc-tggttctgctaaggtgctgggtgtgttaccgaccttggcatttgcagcactaatggaaaagtcaacacaatgaaacaggcagatggcatcttggtattactgtgaaaacaagtctgcctccaggactctctgaaggctgctcaggggacACACTTTCAAAATGGCAAAGATCAATTATGGTTCCTAGTGGGACACAACCCCTAGCCTATTCCTATTCAGCACTG------------------------TCTTGCTCTCTATTTTCCCTCATTCTTCCAACTTATAACCGTATAAATTTTCAAATGTGCAAAGAAGCTGAAAGAATGGTGCAGTAAAATTCAAGTTACCACTCTGCCGTATTTGGTTAATATCTCTTTAtatacataaaaggagagagtgaaatgatggaccatggagacccagaagggtaaggg-ggttggcagttggtgtataat-agaggggtttcttgatgggtacaatgtgcttgtctccagtgctggatgctctgaaggccctgactttaccacaa-ccaatatagcaatgtagcaaaattgcacttgtgcctcatgaatatatatgaatttaagaaataaaaaaTAAAATAACATAACATGTCTCTTTATAGATACAGGTAGACATGTTTGTATAGCAtgtgtgtgaatgtg----------------------------------tgtgtgtgcc----tgtgtgtgtccgcctgtgtgtgtgtgtccgtgtAGAGA----GGCAGCACAAATTAAGAGATTAAGATTTTGTGACTGAGCTTTTCCAAAG
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30511741 1492 + 172585720 atattctgtaaagacttgcactcagaatgtatgaagaaatgtaaaaacccaacagtaaaaatgaaattcaaatacaaaacaggc-aatgagcaagacaggaacagaca--tttctctgaagaggataaacaccggactaaccagcaaatgaaaagacactcaacatgattatccagtaggaaaaatacaaattaaaaccacaatcatgagaatggctgaaatacaaaataaaggtaacaacaggtgctggcaaggatgcagagaaactgggttactcttatgttgctggtaggaaggacttt--aaaatgggacagccactctggaaatgggtattgcagttttcttcaaacttaacatgcaatttaccttatgactagcaactgacctcctaggcacttatttcaaacaagggaaaatgttatgttcacaaaacacctgtacacaaatactcttgcagctttatccataacactttcaaactgaaaataatgaaattgtctttcagtgggtgaaGGAGACCTgctggttgaactcataactgagtcaacacaagtgcccttcctcaaggctaccatcctgcttctctgtgtagtaag-ggtttatgcgtatttcccactttctctcaaataatattaaagacatgtactgagggatcaaaatctaataaacataaa-tttttactgctccatcaaagataatctgaagtgggactgtggtttggagccactgcc-tggttctgctgaggtgctgggtgtgttacttaccgtggcatttgcaacattaatggaaaagtcaacgtaatgaaacaggcagatggcaacttggtatttctgtgaaaacaggtttccctccagga--ctctgaaggcagctcaggggacACACTTTCAAAATGGCAAAGATCAATTATGGTTCCTAGTGGGACA------CTAGCCTATTCCAGTTCAGctctc--------------------tgtctctctctctctGTTTTCCCtcattcttccaacttataattgtgtaaattttcaaatgtgcaaagaatctgaaagaatagtgcagtaaaATTCAAGTTACCACTCTGCCATATTTGCTTAATATCTCTTTATATACATGAAAGCAGCATgtggaatgatggccaatagtgacccagaagggtaagggtggttggcagtgggtgtattatgagaagggtttcttggtgggtacaatgtgcccggctccagtgacggatgcactgaaggccctgactttaccacaactcaatatagcaatgtagcaaaattgcactggtgcctcatgaatgtatacaaatttacaaaataaaaaATAAAATAACATA-------TCTGTATAGATACAGGTAGGTATGTTTGTATAGCAtgtgtgtgaatatgtgtgtgtgtgaatatgtgtgtgtgtgaatatgtgtgtgtgtgaatatgtgtgtgtgtgtatgagtgtctgtgtgtgtgtgtAGAGAGAGAGGCAGCGCCA--------ATGAAGATTGTGTGACTGAGACATTCTAAAG
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   131504 1444 +    231697 atattctgtaaagacttgcactcagaatgtatgaagaaatgtaaaaacccaacagtaaaaatgaaattcaaatacaaaacaggc-aatgagcaagacaggaacagaca--tttctctgaagaggataaacaccggactaaccagcaaatgaaaagacactcaacatgattatccagtaggaaaaatacaaattaaaaccacaatcatgagaatggctgaaatacaaaataaaggtaacaacaggtgctggcaaggatgcagagaaactgggttactcttatgttgctggtaggaaggacttt--aaaatgggacagccactctggaaatgggtattgcagttttcttcaaacttaacatgcaatttaccttatgactagcaactgacctcctaggcacttatttcaaacaagggaaaatgttatgttcacaaaacacctgtacacaaatactcttgcagctttatccataacaccttcaaactggaaataatgaaattgtctttcagtgggtgaaGGAGACCTgctggttgaactcataactgagtcaacacaagtgcccttcctcaaggctaccatcctgcttctctgtgtagtaag-ggtttatgcgtatttcccactttctctcaaataatattaaagacatgtactgagggatcaaaatctaataaaaataaa-tttttactgctccatcaaagataatctgaagtgggactgTGGTTTGGAGCCACTACC-TGGTTCTGCTGAGGTGCTGGGTGTGTTACTTACCGTGGCATTTGCAACATTAATGGAAAAGTCAACGTAATGAAACAGGCAGATGGCATCTTGGTATTTCTGTGAAAACAGGTTTCCCTCCAGGA--CTCTGAAGGCAGCTCAGGGGACACACTTTCAAAATGGCAAAGATCAATTATGGTTCCTAGTGGGACA------CTAGCCTATTCCAGTTCAGctctc--------------------tctctctctctctctGTTTTCCCtcattcttccaacttataattgtgtaaattttcaaatgtgcaaagaatctgaaagaatagtgcagtaaaATTCAAGTTACCACTCTGCCATATTTGCTTAATATCTCTTTATATACATGAAAGCAGCATgtggaatgatggataatagtgacccagaagggtaagggtggttggcagtgggtgtatgatgagaggggtttcttggtgggtacaatgtggccggctccagtgacggatgcactgaaggccctgactttaccacaactcaatatagcaatgtagcaaaattgcattggtgcctcatgaatgcatacaaatttacaaaatagaaaataaaaTAACATA-------TCTGTATAGATACAGGTAGGTATGTTTGTATAGCA------------------------------------------------tgtgtgtgaatatgtgtgtgtgtgtatgagtgtctgtgtgtgtgtgtAGAGAGAGAGGCAGCACCA--------ATGAAGATTGTGTGACTGAACCATTCTAAAG
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          24781 1478 -    863181 atattctgtaaagac-tgtattcggaatatatggagaaatttaaaaacccaacagtaaaaatgaaatccaaatacacaataggc-aataagcaagatatgaacagata--tttcactgaagaggataaacaccaggctaataagcagatgaaaagggagtcaacgtgattatccagtagg-aaaatacaaattaaaaccacagtgatgagaatggctgtaatacaaaataaaggtagcaacagatgctggcaaggatgcagagaaactggctcactcttatattgctggtaggaatgttttttaaaaatgggacagccactctggaaatgagtattgcagttttcttcaaactgaacatgcaatttaccttatgactaacaattgccctcctatgcacttatttcaaacatgggaaatctttatgttcacgaaaattctgtgcacaaatactcttgcagctttattcataatcagcccaaacaggagttaatgcaactgcctttctgtgggtgagtAAGATCTGCTGTTTGaactcataactgagtc-acaccagtgccctttctcaaggctaccatccagcttctctgtgcaataagtgttttatgcatatatcccattttctcacaaggaatattaaagacatgtactcaaggatcaaactttaatgaacataaattttttactgcaccatcaaagacattcttaaatggcagtgcagtttggagccactgccttggttctgctgaggtgctgggtgtgttaccgaccttggcatttgcagcattcatggaaaagtcaacataatgaaacaggcagacggcatcttggtatttctgtgaaaacaggtttccctcctgaactctctgaaggcagctcaggggacACACTTTCAAAATGGCAAAGATCGATTATGGTTCCTAGTGGGACACAACCCCTAGCCTATTCAGATTCAGctctc-----ctctctctctctctttctctccctctctctctTTTCCCtcattcttccaacttat-attatataaattttcaaatgtgcaaataagttgaaagaatggtgcagtaaaATTCAAGTTACCACTCTGCCATATTTGGTTAATATCTCTTCAtatacataaaagcagagtgtgaaatgatggatcacagagacccagaagggtaagtgtggttggcattgggtgtataat-agagggatttcttggtgagtacaatgtgcttgtctccagtgctggatgctctgaagtccctgactttaccacaa-tctatatagcaatatagcaaaattgcacttgtgccccatgaatatatatgaattaaaaaaATTAAAAATAACATAATATA-----TCTCTTTATAGATACAGGTAGACAtatttgtatagcatgtgtgtgaatgtg----------------------------------tgtgtgtgaatgtgtgtgtgt-------agagtgtgtgtgtctgtgtAGAGA-----GCAGCACAAGTTAAGAGATTAAGATTTTGTGACTGAACCATTCCAAAG
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29207506 1471 -  71996105 atattctgtaaagac-tgtattcagaatatatggagaaattaaaaaacccaacagtaaaaatgaaatccaaatacacaataggc-aataagcaagacatgaacagata--tttcactgaagaggataaacaccaggctaataagcagatgaaaaggcagtcaacatgattatccagtagg-aaaatacaaattaaatccacagtgatgagaatggctgcaatacaaaataaaagtaacaacagatgctggcaaggatgcagagaaactgggtcactcttatattgctggtaggaatgtttttttaaaatggtacagccactctggaaatgagtattgcagttttcttcaaactgaacgtgcaatttaccttatgactaacaattgccctcctatgcacttatttcaaacacgggaaatctttatgttcacgaaaatcctgtgcacaaatactcttgcagttttattcataatacccccaaacaggagttaatgcaactgcctttcagtgggtgagtgAGATCTGCTGTTTGaactcataactgagtc-acacaagtgccctttctcaaggctaccatccagcttctctgtgcaataagtgttttatgcatatttcccattttctcacaaggaatattaaagatgtgtactcaaggatcaaactttaatgaacataaattttttactgcaccatcaaagacattcttaaatgGCaatgcagtttggagccactgccttggttctgctgaggtgctgggtgtgttaccgaccttggcatttgcagcattaatggaaaagtcaacataatgaaacaggcagatggcatcttggtatttctgtgaaaacaggttttcctcctgaactctctgaaggcagctcaggggacACACTTTCAAAATGGCAAAGATCAATTATGGTTCCTAGTGGGACACAACCCCTAGCCTATTCAGATTCAGctcgctctcgctctctctctctctctctccccccctctctctTTTCCCtcattcttccaacttat-attgtataaattttcaaatgtgcaaataagctgaaagaatggtgcagtaaaATTCAAGTTATCACTCTACCATATTTGGTTAATATCTCTTTgtatacataaaagcagagtgtgaaatgatggatcacagagacccagaagggtaagtgtggttggcattgggtgtatagc-agagggatttcttggtgagtacaatgtgcttgtctccagtgctggatgctctgaaggccctgactttaccacaa-cctatatagcaatatagcaaaattgcacttgtg-cccatgaatatatatgaattaaaaaaATTAAAAATAACATAACATG-----TCTCTTTATACATACACGTAGACATGTTTGTATAGCAtgtgtgtgaatgtg----------------------------------tgtgtatgaatgt------------------gtgtgtgtgtctgtgtAGAGA-----GCAGCACAAGTTAAGAGATTAAGATTTTGTGACTGAACCATTCCAAAG
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          15529 1478 +    273075 atattctgtaaagac-tgtattcggaatatatggagaaatttaaaaacccaacagtaaaaatgaaatccaaatacacaataggc-aataagcaagatatgaacagata--tttcactgaagaggataaacaccaggctaataagcagatgaaaagggagtcaacgtgattatccagtagg-aaaatacaaattaaaaccacagtgatgagaatggctgtaatacaaaataaaggtagcaacagatgctggcaaggatgcagagaaactggctcactcttatattgctggtaggaatgttttttaaaaatgggacagccactctggaaatgagtattgcagttttcttcaaactgaacatgcaatttaccttatgactaacaattgccctcctatgcacttatttcaaacatgggaaatctttatgttcacgaaaattctgtgcacaaatactcttgcagctttattcataatcagcccaaacaggagttaatgcaactgcctttctgtgggtgagtAAGATCTGCTGTTTGaactcataactgagtc-acaccagtgccctttctcaaggctaccatccagcttctctgtgcaataagtgttttatgcatatttcccattttctcacaaggaatattaaagacatgtactcaaggatcaaactttaatgaacataaattttttactgcaccatcaaagacattcttaaatggcagtgcagtttggagccactgccttggttctgctgaggtgctgggtgtgttaccgaccttggcatttgcagcattcatggaaaagtcaacataatgaaacaggcagacggcatcttggtatttctgtgaaaacaggtttccctcctgaactctctgaaggcagctcaggggacACACTTTCAAAATGGCAAAGATCGATTATGGTTCCTAGTGGGACACAACCCCTAGCCTATTCAGATTCAGctctc-----ctctctctctctctttctctccctctctctctTTTCCCtcattcttccaacttat-attatataaattttcaaatgtgcaaataagttgaaagaatggtgcagtaaaATTCAAGTTACCACTCTGCCATATTTGGTTAATATCTCTTcatatacataaaagcagactgtgaaatgatggatcacagagacccagaagggtaagtgtggttggcattgggtgtataat-agagggatttcttggtgagtacaatgtgcttgtctccagtgctggatgctctgaagtccctgactttaccacaa-tctatatagcaatatagcaaaattgcacttgtgccccatgaatatatatgaattaaaaaaATTAAAAATAACATAATATA-----TCTCTTTATAGATACAGGTAGACATATTTGTATAGCAtgtgtgtgaatgtg----------------------------------tgtgtgtgaatgtgtgtgtgt-------agagtgtgtgtgtctgtgtAGAGA-----GCAGCACAACTTAAGAGATTAAGATTTTGTGACTGAACCATTCCAAAG
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2931966 1439 -   3067355 ATATTCTGTAAAGAC-Tgtattcagaatatatggagaaattaaaaaacccaacagtaaaaatgaaatccaaatacacaataggc-aataagcaagacacgaacagata--cttcactgaagaggatagacaccgggctaataagcagatgaaaaggcagtcaacatgattatccagtagg-aaaacacaaattaaaaccacaatgatgagaatggctataatacaaaataaaggtagcaacagatgctggcaaggatgcagagaaactgggtcactcttatattgctggtaggaatgttttttaaaaatgggagagccactctggaaatgagtattgcagttttcttcaaactgaacatgcaatttaccttatgactaacaaattccctc-------cttatttcaaacacgggaaatctttatgttcatgaaaatcctgggcacaaatactcttgcagctttattcataatacccccaaacaggagttagtgcaactgcctttcagtgggtgagtgAGATCTGCTGTTTGaactcataactgagtc-acacaagtgccctttctcaaggctaccatccagcttctctgtgcaataagtgttttatgcatatttcccattttatcacaaggaatattaaagatgtgtactcaaggatcaaactttaatgaacataaattttttactgcaccatcaaagacattcttaaatgGCaatgcagtttagagccactgccttggttctgctaaggtgctgggtgtgttaccgaccttggcatttgcagcattaatggaaaagtcaacataatgaaacaggcagatggcatcttggtattactgtgaaaacaggttttcctcctgaactctctgaaggcagctcagggGATACACTTTCAAAATGGCAAAGATCAATTATGGTTCCTAGTGGGACACAACCCCTAGCCTATTCAGATTCAGctctc------------tctctctctctctctccctctctctTTTCCCtcattcttccaacttat-gttatataaattttcaaatgtgcaaataagctgaaagaatggtgcagtaaaATTCAAGTTACTACTCTACCATATTTGGTTAATATCTCTTTAtatacataaaagcagagtgtgaaatgatggatcacagagacccagaagggtaagggtggttggcattgggtgtataac-agagggatttcttggtgagtacaatgtgcttgtccccagtgctgaatgctctgaaggccctgactttaccacaa-cctatatagcaatatagcaaaattgcacttgtgccccatgaatatatatgaatttaaaaaaTTAAAAATAACATAACATG-----TCTCTTTATAGATACACATAGACATGTTTGTATAGCA------------------------------------------------TAtgtgtgaatgt------------------gtgtgtgtgtctgtgtAGAGA-----GCAGCACAAGTTAAGAGATTAAGATTTTGTGACTGAACCATTCCAAAG
i colAng1.NW_012115566v1       I 80566 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e saiBol1.JH378364                88695 26761 +    187130 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=78069.000000
s hg38.chr6_GL000254v2_alt      1073745 20 +   4827813 TAACTTAAACATAAAACACA---------
s panTro5.chr6                 30039405 20 + 175400573 TAACTTAAACATAAAACACA---------
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30270046 20 + 173848474 TAACTTAAACATAAAACACA---------
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6078498 20 +   6154872 TAACTTAAACATAAAATACA---------
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30513233 20 + 172585720 TAACTTAAACACAAAACACG---------
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   132948 20 +    231697 TAACTTAAACATAAAACACA---------
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          26259 20 -    863181 TAACTTAAACATAAAACATA---------
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29208977 20 -  71996105 TAACTTAAACATAAAACATA---------
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          17007 20 +    273075 TAACTTAAACATAAAACATA---------
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2933405 20 -   3067355 TAACTTAAACATAAAACATA---------
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364               115456 28 +    187130 TAACCAAAATATAAAA-ACACTTAAACAG
i saiBol1.JH378364             I 26761 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e aotNan1.NW_018496904v1         100188 98942 -    383796 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=942582.000000
s hg38.chr6_GL000254v2_alt      1073765 190 +   4827813 CATGGATAAATGTGTCTGTGACAACAAACCTGAATACAAACATGAAATAATATGTCTATAAACACATCTCTAGATAGATAGCTTATGAATGAATTCCCTACCCCAGCTCCCTTACTGGTTGCCCTGTGAACACAGGGAGTCAGGGAACAGGACCCAGCTAGGGTCCCTCATCCTTCTCTTGCATCCAGGC
s panTro5.chr6                 30039425 190 + 175400573 CATGGATAAATGTGTCTGTGACAACAAACCTGAATACAAACATGAAATAATATGTCTATAAACACATCTCTAGATAGATAGCTTATGAGTGAATTCCCTACCCCAGCTCCCTTACTGGTTGCCCTGTGAACACAGGGAGGCAGGGAACAGGACCCAGCTAGGGTCCCTCATCCTTCTCTTGCATCCAGGC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30270066 190 + 173848474 CATGGATAAATGTGTCTGTGACAACAAACCTGAATACAAACATGAAATAATATGTCTATAAACACATCTCTAGATAGATAGCTTATGAATGAATTCCCTACCCCAGCTCCCTTACTGGTTGCCCTGTGAACACAGGGAGGCAGGGAACAGGACCCAGCTAGGGTCCCTCATCCTTCTCTTGCATCCAGGC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6078518 190 +   6154872 CATGGATAAATGTGTCTGTGACAACAAACCTGAATACAAACATGAAATAATATGTCTATAAACACATCTCTAGATAGATAGCTTATGAATGAATTCCCTACCCCAGCTCCCTTACTGGTTGCCCTGTGAACACAGGCAGGCAGGGAACAGGACCCAGCTAGGGTCCCTCATCCTTCTCTTGCATCCAGGC
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30513253 190 + 172585720 CATGGATAAATGTGTCTGTGAAAACAAACCTGAATACAAACATGAAACCATATATCTATAAACACATCTCTGGATAGATAGCTTATGAACGAATTCCCTACCCCAGCTCCCTTACTGGTTACCCTGTGAACACAGGCAGGCAGGAAACAGGACCCAGCTAGGGTTCCTCATCCTTCTCTTGCATCCAGGC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   132968 190 +    231697 CATGGATAAATGTGTCTGTGACAACAAACCTGAATACAAACATGAAACAATATATCTATAAACACATCTCTGGATAGATAGCTTATGAACGAATTCCCTACCCCAGCTCCCTTACTGGTTACCCTGTGAACACAGGCAGGCAGGAAACAGGACCCAGCTAGGGTTCCTCATCCTTCTCTTGCATCCAGGC
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          26279 189 -    863181 CATGGATAAATGTGTCTGTGACAACAAACCTGAATACAAACATGGAA-AATATCTCTATAAACACATCTCTGGATAGATAGCTTATGAACGAATTCTCTATGCCAGCTGCCTTACTGGTCACCCTGTGAACACAGGCAGGCAGGGAACAGGACCCAACTAGGTTCCCTCATCCTTCTCTTGCTTCCAGGC
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29208997 190 -  71996105 CATGGATAAATGTGTCTGTGACAACAAACCTGAATACAAACACGAAAGAATATGTCTATAAACACATCTCTGGATAGATAGCTTATGAACGAATTCCCTACGCCAGGTCCCTTACTGGTCACTCTGTGAACACCGGCAGGCAGGGAACAGGACCCAACTAGGTTCCCTCATCCTTCTCTTGCTTCCAGGC
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          17027 189 +    273075 CATGGATAAATGTGTCTGTGACAACAAACCTGAATACAAACATGGAA-AATATCTCTATAAACACATCTCTGGATAGATAGCTTATGAACGAATTCCCTATGCCAGCTACCTTACTGGTCACCCTGTGAACACAGGCAGGCAGGGAACAGGACCCAACTAGGTTCCCTCATCCTTCTCTTGCTTCCAGGC
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2933425 190 -   3067355 CATAGATAAATGTGTCTGTGACAACAAACCTGAATACAAACATGAAAGAACATATCTATAAACACATCTCTGGATAGATAGCTTATGAACGAATTCCCTACGCCAGCTCCCTTACTGGTTACCCTGTGAACACAGGCAGGCAGGGAACAGGACCCAGCTAGGTTCCCTCGTCCTTCTCTTGCTTCCAGGC
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364               115484 186 +    187130 CATATACAAATGTGTATGTGACCTCAACCTTGAATACAAACATGAAAGAACATGTCTATAAACACAACTCTGTGTAGGTAGCCCATGAATGAATTCCCTA-CTCTAGAACTTTCCTGGTTGTCCTGTGAACACAAGCGGGCAGGGACCAGCACCCGACTAGTGTCCCTCATCCTC---TTACTCCCAAGC
i saiBol1.JH378364             C 0 C 0
s aotNan1.NW_018496904v1         199130 185 -    383796 CATGCATAAATGTGTATGTAACATCAACTCTGAATAAAAACATGGAAGAGTATGTCAATAAACACATTTCTGGATAAATAGCCCACAAATGAATTCTCTACCCCTTCTCCTTTATTGGTTGCCCTGTGACCTGAGGC-AGCGGGTATCAGGAC----CTAAGGTCTCTCATCCTTCTGTTGCTTCCAGGC
i aotNan1.NW_018496904v1       I 98942 T 88251
e canFam3.chr12                71485912 43737 -  72498081 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=303127.000000
s hg38.chr6_GL000254v2_alt      1073955 57 +   4827813 AGGTCCTGCATCCACTCTGGCTGCACAGAAGGCTCCCATCCCTGCCTTGGTCTGTTT
s panTro5.chr6                 30039615 57 + 175400573 AGGTCCTACATCCACTCTGGCTGCACAGAAGGCTCCCATCCCTGCCTTGGTCTGTTT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30270256 57 + 173848474 AGGTCCTACATCCACTCTGGCTGCACAGAAGGCTCCCATCCCTGCCTTGGTCTGTTT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6078708 57 +   6154872 AGGTCCTGCATCCACTCTGGCTGCACAGAAGGCTCCCATCCCTGCCTTGGTCTGTTT
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30513443 57 + 172585720 AGGTTCTGCATCTGCTACTGCTGCACAGAGGGCTCCCATCCCTGTCTTGGTCAGTTT
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   133158 57 +    231697 AGGTTCTGCATCTGCTACTGCTGCACAGAGGGCTCCCATCCCTGTCTTGGTCAGTTT
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          26468 57 -    863181 AGGTCCTGCATCCACTCCTGCTGCACAGGGGGCTCCCATCCCTGCCTTGGTCTGTTT
i cerAty1.NW_012002535v1       C 0 C 0
s chlSab2.chr17                29209187 57 -  71996105 AGGTCCTGCATCCACTCCTGCTGCACAGGGGGCTCCCATCCTTGCCTTGGTCACTTT
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          17216 57 +    273075 AGGTCCTGCATCCACTCCTGCTGCACAGGGGGCTCCCATCCCTGCCTTGGTCTGTTT
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2933615 57 -   3067355 AGGTCCTGCATCCACTCCTGCTGCGCAGGGGGCTCCCATCCCTGCCTTGGTCAGTTT
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364               115670 57 +    187130 AGGTACTGCATCTGCTCCTGCTGCACAGAGGGCTCCCATCCCTGCCTTGGTCTCTTT
i saiBol1.JH378364             C 0 C 0
s aotNan1.NW_018496904v1         111064 57 -    383796 AGGTCCTGCATCTGCTCCTGCTGCACAGAGGCCTCCCATCCCTGCCTTGGTCTCTTT
i aotNan1.NW_018496904v1       T 88251 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e cebCap1.NW_016107755v1         361139 67469 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=1998892.000000
s hg38.chr6_GL000254v2_alt      1074012 344 +   4827813 CACAGGTGCTCCCCTAACTCTCTCTGCCACCACTGCTTTATCTGGATGGAGCTGAGGCTGCCCTGACCAAGAACAGCACCACCCATCTGTGT-CCCCAAGACCAGGAAGTT--------------------AGGAGGAACCACACAACAAGGTCAGGAACTATCCCACCTC------CCCAATCAGTCTGAACTGATGGCGGGAGATGCTGATGCTTGCTTTACTCATCCTCAATCCCAGCTCACTTATTCTTCATTAATTCAATCCA-ATCTCCCCAGCAGTCACTTCACCCCAGAAGCTGACTGACCTCTACTCTTCGTAATCAGGAAACCACAAAGCACTCTCCGTCCCCTCCCTGATATCACCCTTCA
s panTro5.chr6                 30039672 344 + 175400573 CACAGGTGCTCCCCTAACTCTCTCTGCCACCACTGCTTTATCTGGATGGAGCTGAGGCTGCCCTGACCAAGAACAGCACCACCCATCTGTGT-CCCCAAGACCAGGAAGTT--------------------AGGAGGAACCACACAACAACGTCAGGAACTATCCCACCTC------CCCAATCAGTCTGAACTGATGGCGGGAGATGCTGATGCTTGCTTTACTCATCCTCAATCCCAGCTCACTTATTCTTCATTAATTCAATCCA-ATCTCCCCAGCAGTCACTTCACCCCAGAAGCTGACTGACCTCTACTCTTCGTAATCAGGAAACCACAAAGCACTCTCCGTCCCCTCCCTGATATCACCCCTCA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30270313 344 + 173848474 CACAGGTGCTCCCCTAACTCTCTCTGCCACCACTGCTTTATCTGGATGGAGCTGAGGCTGCCCTGACCAAGAACAGCACCACCCATCTGTGT-CCCCAAGACCAGGAAGTT--------------------AGGAGGAACCACACAACAACGTCAGGAACTATCCCACCTC------CCCAATCAGTCTGAACTGATGGCGGGAGATGCTGATGCTTGCTTTACTCATCCTCAATCCCAGCTCACTTATTCTTCATTAATTCAATCCA-ATCTCCCCAGCAGTCACTTCACCCCAGAAGCTGACTGACCTCTACTCTTCGTAATCAGGAAACCACAAAGCACTCTCCGTCCCCTCCCTGATATCACCCTTCA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6078765 344 +   6154872 CACAGGTGCTCCCCTAACTCTCTCTGCCACCACTGCTTTATCTGGATGGAGCTGAGGCTGCCCTGACCAAGAACAGCACCACCCATCTGTGT-CCCCAAGACCAGGAAGTT--------------------AGGAGGAACCACACAACAAGGTCAGGAACTATCCCACCTC------CCCAATCAGTCTGAACTGATGGCGGGAGATGCTGATGCTTGCTTTACTCATCCTCAATCCCAGCTCACTTATTCTTCATTAATTCAATCCA-ATCTCCCCAGCAGTCACTTCACCCCAGAAGCTGACTGACCTCTACTCTTCGTAATCAGGAAACCACAAAGCACTCTCCGTCCCCTCCCTGATATCACCCTTCA
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30513500 342 + 172585720 CACAGGTGCTCCCCTAACTCTCTCTGCCTCCACTGCTTTACCTGGGTAGAGCTGAGGCTGCCCTGACCAAGAACAGCACCACCCACCTGTGC-CCCCAAGACCAGGAAGTT--------------------AGGAAGAACCACGCAACAGGGTCAGGAACTCTCCCACCTC------CCCAGTCAGTCTGAACTGATGGCAGGAGATACTGATGCTTGCTTTACTCATCCTCATTCCCAGCTCATTTATTCTGCATTAATTCCGTTCACATGTCCCTAGCAGTCACTTCACCCCAGAAGC--ACTGACCTCTACTCTTCATAATCAGGAAACCCCAAAGCACTCTCTGTCACCTCCCGGATATCA-TCTTCA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   133215 342 +    231697 CACAGGTGCTCCCCTAACTCTCTCTGCCTCCACTGCTTTACCTGGGTGGAGCTTAGGCTGCCCTGACCAAGAACAGCACCACCCACCTGTGC-CCCCAAAACCAGGAAGTT--------------------AGGAGGAATCACGCAACAGGGTCAGGAACTCTCCCACCTC------CCCAGTCAGTCTGAACTGATGGCAGGAGATACTGATGCTTGCTTTACTCATCCTCATTCCCAGCTCATTTATTCTGCATTAATTCCGTTCACATGTCCCTAGCAGTCACTTCACCCCAGAAGC--ACTGACCTCTACTCTTCATAATCAGGAAACCCCAAAGCACTCTCTGTCACCTCCCGGATATCA-TCTTCA
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002535v1          26525 344 -    863181 CACAGGTGCTCCCCTAACTTTCTCTGCCACCACTGGTTTACCTGGATGGAGCTGAGGCTGCCCTGACCAAGAACAGCACCACCCACCTGTGC-CCTCAAGACCAGGAAGTT--------------------AGGAGGAACCACGCAACAGGGTCAGTAACTATCCCACCTC------CCCAATCAGTCTGAACCGATGGCAGGAGATACTGATGCTTGCTTTACTCATCCTCATTCCAAGCtcatttattcttcattaattcagttca-atcTCCCCAACAGTCACTTCACCCCAGAAGCTGACAGACCTCTAATCTTTGTAATCAGGAAACCACAAAGCACTCTCTGTCACCTCCCTGATATCACCCTTCA
i cerAty1.NW_012002535v1       C 0 I 79028
s chlSab2.chr17                29209244 344 -  71996105 CACAGGTGCTCCCCTAACTCTCTCTGCCTCCACTGCCTTACCTGGGTGGAGCTGAGGCCGCCCTGACCAAGAACAGCACCACCCACCTGTGC-CCCCAAGACCAGGAAGTT--------------------AGGAGGAACCACGCAACAGGGTCAGGAACTCTCCCACCTC------CCCAGTCAGTCTGAACTGATGGCAGGAGATACTGATGCTTGCTTTACTCATCCTCATTCCCAGCTCATTTATTCTTCATTAATTCAGTCCA-ATCTCCCCAGCAGTCACTTCACCCCAGAAGCTGACTGACCTCTAATCTTTGTAATCAGGAAACCACAAAGCACTCTCTGTCACCTCCCTGATATCACCCTTCA
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          17273 344 +    273075 CACAGGTGCTCCCCTAACTTTCTCTGCCACCACTGGTTTACCTGGATGGAGCTGAGGCTGCCCTGACCAAGAACAGCACCACCCACCTGTGC-CCCCAAGACCAGGAAGTT--------------------AGGAGGAACCACGCAACAGGGTCAGTAACTATCCCACCTC------CCCAATCAGTCTGAACCGATGGCAGGAGATACTGATGCTTGCTTTACTCATCCTCATTCCAAGCTCATTTATTCTTCATTAATTCAGTTCA-ATCTCCCCAACAGTCACTTCACCCCAGAAGCTGACTGACCTCTAATCTTTGTAATCAGGAAACCACAAAGCACTCTCTGTCACCTCCCTGATATCACCCTTCA
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2933672 344 -   3067355 CACAGGTGCTCCCCTAACTCTCTCTGCCACCACTGCCTTACCTGGATGGAGCTGAGGCTGCCCTGACCAAGAACAGCACCACCCACCTGTGC-CCCCAAGACCAGGAAGTT--------------------AGGAGGAATCACGCAACAGGGTCAGGAACTCTCCCACCTC------CCCAGTCAGTCTGAACCGATGGCAGGAGATAATGATGCTTACTTTACTCATCCTCATTCCCAGCTCATTTATTCTTCATTAATTCAGTCCA-ATCTCCCCAACAGTCACTTCACCCCAGAAGCTGACTGACCTCTAATCTTTGTAATCAGGAAACCACAAAGCACTCTCTGTCACCTCCCTGATATCACCCTTCA
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364               115727 324 +    187130 CACAGGCGCTCCTGTAACCCTCTCTGCCACCACTGCCTTACCTGGGTGGAGCTGAGGCTGCCCTGACCAAGAAGGGCACCACCCATTCATGTGCCCCAAGACCAGAC------------------------AGGAGGAACCTCGAAGCAGGTTCAGGAACTACCCCACCT-------CCCAGTCAGTCGAAACTGATGGTGGGAGATGCTGACGCTTGCTTTACTCATCCACATCCCCAGTGCATTTATTCTTCATTAATTCAGTCCACATCTCCCT-----------------ACAAGAAGACAGACTACTACTCTTAATAATCAGGAAGCCTCAGAGCACTTTTTATACCCTCCGGAATATCACACTTCA
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         428608 355 -   1771730 CACAGGCGCTCCTCTAACTCTCTCTGCCACCACTGCCTTACCTGGGTGGAGCTGAGGCTGCCCTGACCAAGAAGGGCACTACCCATCTGTGTGCCCCAAGACTAGGAGGGGCACACAGATGGGTAGTGTGGAGGAGGAACCTCGAAGCAGGTACAGGAACTATCCCCCCTCCCACCACCCAGTCAGTTTGAACTGATGGCAGGAGATGCTGATGCTTGCTTTACTCATCCACATCCCCAGCTCATTTATTATTCATTAATTCAGTCCACATCTCCCC-----------------AGAAGCAGACCGATCTCTACTCTTCATAATCAGAAAACCCCAGAGCACTTTTTGTCCCCTCTGGAATATCACACTTCA
i cebCap1.NW_016107755v1       I 67469 C 0
s aotNan1.NW_018496904v1         111121 333 -    383796 CACAGGCGCTCCTCTAACTCTCTCTGCCACCACTGCCTTACCTGGGCGGAGCTGAGGCTGCCCTGACCAGGAAGGGCACCACGCATCTGTGTGCCCCAAGACCAGACAGTT--------------------AGGAGGAACCCC---ACAAGCTCAGGAAGTATCCCACCTCCCACCTCCCAGTCAGTCTGAACTGATGGCGGGAGATGCTGATGATTGCTTTACTCATCCACATTCCCAGGGCATTGATTCTTCATTAATTCAGTCCACATCTCCCC----------------TAGAAGCAGACTGAACCCTACTCTTCATAATCAGAAAACCCCAGAGCACTTTTTGTCCCCTCTGGAATATCACACTTCA
i aotNan1.NW_018496904v1       C 0 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=705283.000000
s hg38.chr6_GL000254v2_alt      1074356 126 +   4827813 GCTCTACATCATCATATGTGGGCTCTAACTCTGCAGGGAAGATGTTGCCCCACAGGGTCAGCCCCTGAACACTGGCTGCAAATGT-CCCCCC-ATCCCTTCCCAGCCCTTTCGGTGTTGCTGTGAATC
s panTro5.chr6                 30040016 126 + 175400573 GCTCTACATCATCATATGTGGGCTCTAACTCTGCAGGGAAGATGTTGCCCCACAGGGTCAGCCCCTGAACACTGGCTGCAAATGT-CCCCCC-ATCCCTTCCCAGCCCTTTCGGTGTTGCTGTGAATC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30270657 126 + 173848474 GCTCTACATCATCATATGTGGGCTCTAACTCTGCAGGGAAGATGTTGCCCCACAGGGTCAGCCCCTGAACACTGGCTGCAAATGT-CCCCCC-ATCCCTTCCCAGCCCTTTCGGTGTTGCTGTGAATC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6079109 127 +   6154872 GCTCTACATCATCATATGTGGGCTCTAACTCTGCAGGGAAGATGTTGCCCCACAGGGTCAGCCCCTGAACACTGGCTGCAAATGTCCCCCCC-ATCCCTTCCCAGACCTTTCGGTGTTGCTGTGAATC
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30513842 125 + 172585720 GCTCTACATCATCACATGTGGGCTCCAACTCTGCAGGGCAGATGTTCCCCGACATGGTCAACCCCTGAACATTGGCCCCAGATGT--CCCCC-ATCCCTTCTCAGCCCTTTCGGTGCTGCTGTGAATC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   133557 125 +    231697 GCTCTACATCATCACATGTGGGCTCCAACTCTGCAGGGCAGATGTTCCCCAACATAGTCAACCCCTGAACATTGGCCCCAGATGT--CCCCC-ATCCCTTCTCAGCCCTTTCGGTGCTGCTGTGAATC
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         721701 126 +    766320 GCTCTACATCATCACATGTGAGCTCCAACTCTGCAGGGCAGGTGTCCCCC-ACAGGGTCAGTCCCTGAACATTGGCCCCAGATGTTCCCCCC-ATCCCTTCCCAGCCCTTTCAGTGTTGCTGTGAATC
i cerAty1.NW_012002711v1       I 25331 C 0
s chlSab2.chr17                29209588 125 -  71996105 GCTCTACGTCATCACATGTGAGCTCCAACTCTGCAGGGCAGGTGTCCCCC-ACAGGGTCAGCCCCTGAACATTGGCCCCAGATGTT-CCCCC-ATCCCTTCCCAGCCCTTTCGGTGTTGATGTGAATC
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          17617 126 +    273075 GCTCTACGTCATCATATGTGGGCTCCAACTCTGCAGGGCAGGTGCCCCCC-ACAGGGTCAGCCCCTGAACATTGGCCCCAGATGTTCCCCCC-ATCCCTTCCCAGCCCTTTCGGTGTTGATGTGAATC
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2934016 126 -   3067355 GCTCTACGTCATCACATGTGAGCTCCAACTCTGCAGGGCAGGTGTCCCCC-ACAGGGTCAGCCCCTAAACATTGGCCCCAGATGTTCCCCCC-ATCCCTTTCCAGCCCTTTCGGTGCTGCTGTGAATC
i colAng1.NW_012115566v1       C 0 T 80567
s saiBol1.JH378364               116051 124 +    187130 GCTCTGCATCGTCACAT-AAGGCTCCAACTCTGCAGGGCAGGTGTCCCCC-ACAGGGTCAGCCCCTGAACCGTGGCTGCAGATGT-CCCCCC-ATCCTTTCCCAGACCTGTTGGTGTTACTGTGAATC
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         428963 125 -   1771730 GCTCTGCATTGTCACATGAGGGCTCCATCTCTGCAGGGCAGGTGTCGCCC-ACAGGGTCAGCCCATGAACATTTGCCGCAGATGT-CCCCCC-ATCCCTTCCCAGGCTTCTGGGTATTACTGTGAAGC
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1         111454 125 -    383796 GCTCTGCCTCATCACATGAGGGTACAAACTCTGCAGGGCAGGTGTCCCCC-ACAGGGTCAGCCC-TGAACATTTGCTGCAGATGT-CCCCCCAATCCCTTCCCAGGCCTGTCAGTGTTATTGTGAATC
i aotNan1.NW_018496904v1       C 0 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=963291.000000
s hg38.chr6_GL000254v2_alt      1074482 163 +   4827813 TGTCCCTCACTGAGAACTGGCGGGGAGATGTGGGGGAGGAGGGAAGGTTTCTTTATGCTGTGTCAAAGCATGGAGACAGACCTCTCCTTCTCTCCTGAACCTCACA--CTATCCCTTCCCAGACACTTGAAATAAAACGCAGACCAGAAATGTCTATTTAAGAGT
s panTro5.chr6                 30040142 163 + 175400573 TGTCCCTCACTGAGAACTGGCGGGGAGATGTGGGGGAGGAGGGGAGATTTCTTTATGCTGTGTCAAAGCATGGAGACAGACCTCTCTTTCTCTCCTGAACCTCACA--CTATCCCTTCCCAGACACTTGAAGTAAAACGCAGACCAGAAATGTCTATTTAAGAGT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30270783 163 + 173848474 TGTCCCTCACTGAGAACTGGCGGGGAGATGTGGGGGAGGAGGGGAGATTTCTTTATGCTGTGTCAAAGCATGGAGACAGACCTCTCTTTCTCTCCTGAACCTCACA--CTATCCCTTCCCAGACACTTGAAGTAAAACGCAGACCAGAAATGTCTATTTAAGAGT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6079236 163 +   6154872 TGTCCCTCACTGAGAACTGGCGGGGAGATGTGGGGGAGGAGGGGAGATTTCTTTGTGCTGTGTCAAAGCATCAACACAGACCTCTCCTTCTCCCCTGAACCTCACA--CTATCCCTTCCCAGACACCTGAAATAAAACGCAGACCAGAAATGTCTATTTAAGAGT
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30513967 165 + 172585720 TGTCCCTCACTGAGAACTGGTGGGGAGATGTGGGGGAGGAGGGGAGATTTCTCTGTGCTGCGTACAGGCATGAAGACAGACCTCTCCTTCTCTCCTGAACCTCACACTCTCTCCCTTCCCAGACTCGTAAAATAAAACACAGACCAGAAATGTATATTTAAACGT
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   133682 165 +    231697 TGTCCCTCACTGAGAACTGACAGGGAGATGTGGGGGAGGAGGGGAGATTTCTCTGTGCTGCGTCCAGGCATGAAGACAGACCTCTCCTTCTCTCCTGAACCTCACACTCTATCCCTTCCCAGACACGTGAAATAAAACGCAGACCAGAAATGTATATTTAAACGT
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         721827 165 +    766320 TGTCCCTCAATGAGAACTGACAGGGAGATGTGGGGGAGGAGGGGAGATTTCTTTGTGCTGTGTCAAGGCATGGAGACAGACCTCTTCTTCTCTCCTGAACCTCACACTCTGTCCCTTCCCAGTCACTTGAAATAAAATGCAGACCGGAAATGTGTATTTAAGAGC
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29209713 165 -  71996105 TGTCCCTCAATGAGAACTGGTGTGGAGATGTGGGGGAGGAGGGGAGATTTCTTTGTGCTATGTCAAGGCATGGAGACAGACCTCTCCTTCTCTCCTGAACCTCACACTCTATCCCTTCCCAGTCACTTGTAATAAAACGCAGACCGGAAATGTCTATTTAAGTGC
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          17743 165 +    273075 TGTCCCTCAATGAGAACTGGTGTAGAAATGTGGGGGAGGAGGGGAGATTTCTTTGTGCTGTGTCAAGGCATCGAGACAGACCTCTCCTTCTCTCCTGAACCTCACACTCTATCCCTTCCCAGACACTTGAAATAAAACACAGACCGGAAATGTCTATTTAAGAGC
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2853575 157 -   3067355 TGTCCCTCACTGAGAACTGGCGGGGAGATGTGGAGGAGGAGGGGAGATTTCTCTGTGCTGTGTCAAGGCATCAAGACAAACCTCTC---CTCTCCTGAACCTCACAGTCTATCCCTTCCCAGACACTTGAAATAAAACACA-----GAAATGTCTATTTAAGAGT
i colAng1.NW_012115566v1       T 80567 I 81142
s saiBol1.JH378364               116175 164 +    187130 TGTCCCTTAATGAGAACTGGCAGGGAGATGTCACGGAGGAGGGGAGATTTCTTTGTGCTGTGTCAAAACATTGAGACAGACTGCTCCTTCTCCCCTGAACCACA-ACTCTGTTCCTTCCCAGACACTTGAAATAAAACACAGACCAGAAATGTCTATTTAAAAGC
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         429088 164 -   1771730 TCTCCCTCACTGACAACTGGCGGGGAGATGTCAGGGAGGAGAGCAGATTTCTTTGTGCTGTGTCAAGGCATCAAGACAGACCTCTCCTTCATCCCTGAACCTCA-ACTCTGTTCCTTCCCAGACACTTGAAATAAAACTCAGACCAGAAATGTCTATTTAAAAGC
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1         111579 164 -    383796 TGTCCCTCACTGAGAACTGGTGGGGAAATGTCAGAGGGGAGGGGAGATTTCTTTGTGCTGTGTCAAGGCATCAAGACAGACCTCTCCTTCTCCCCTGAACCTCA-ACTCTCTTTCTTCTGAGACGCTTGAAATGAAACACAGACCAGAAATGTCTATTTAAAAGC
i aotNan1.NW_018496904v1       C 0 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=1177722.000000
s hg38.chr6_GL000254v2_alt      1074645 266 +   4827813 TAAATATCTATAGTATAAAATATGAAGACAGAGTAGAATGGGGTAATGCAGGAGAGCATGACAGAGATGACAGGACCTCAAGGTGCCAGGAAAGCTGGTGCTGGGCCAGGACCAAGGAGCCATCAGCAGGACACTCACTCATAATGCTCACCTATAATAAT-----------------------------------------ACAATTACTGCATATGTAATATATCAAAATATAATA--------AAA---TAACAAAATAACAAA-AATAATATggcacagctgcaaataccccatatatactaacccttttcattc
s panTro5.chr6                 30040305 266 + 175400573 TAAATATCTATAGTATAAAATATGAAGACAGAGTAGAATGGGGTAATGCAGGAGAGCATGACAGAGATGACAGGACCTCAAGGTGCCAGGAAAGCTGGTGCTGGGCCAGGACCAAGGAGCCATCAGCAGGACACTCACTCATAAAGCTCACCTATAATAAT-----------------------------------------ACAATTACTGCATATGTAATATATCAAAATATAATA--------AAA---TAACAAAATAACAAA-AATAACATggcacagctgcaaataccccatatatactaacccttttcattc
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30270946 266 + 173848474 TAAATATCTATAGTATAAAATATGAAGACAGAGTAGAATGGGGTAATGCAGGAGAGCATGACAGAGATGACAGGACCTCAAGGTGCCAGGAAAGCTGGTGCTGGGCCAGGACCAAGGAGCCATCAGCAGGACACTCACTCATAAAGCTCACCTATAATAAT-----------------------------------------ACAATTACTGCATATGTAATATATCAAAATATAATA--------AAA---TAACAAAATAACAAA-AATAACATggcacagctgcaaataccccatatatactaacccttttcattc
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6079399 266 +   6154872 TAAATATCTATAGTATAAAATATGAAGACAGAGTAGAATGGGGTAATGCAGGAGAGCATGACAGAGATGACAGGACCTCAAGGTGCCAGGAAAGCTGGTGCTGGGCCAGGACCAAGGAGCCATCAGCAGGACACTCACTCATAAAGCTCACCTATAATAAT-----------------------------------------ACAATTACTGCATATGTAATATATCAAAATATAATA--------AAA---TAACAAAATAACAAA-AATAATATggcacagctgcaaataccccatatatactaacccttttcattc
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30514132 260 + 172585720 TAAATATCTATAGTATAAAATATGAAGACAGAGCAGAATAGGGTAATGCAGGAGAGTGGAACAGGGATGAGACGACCTCAAGGTGCCAGGAAAGCTGGTCCT-GGCTCCCCAGGAGGAACCGTCACCAGGACACTCACTCATAAAGCTCATCTATAATAAT-----------------------------------------ACAATTACGGCACATGTGATATAGTAAAATATAACA--------ACA--------AAATAACAAA-AATAACATAgcacaactgcaaacacctcatatatggtaacccttatcattc
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   133847 260 +    231697 TAAATATCTATAGTATAAAATATGAAGACAGAGCAGAATAGGGTAAAGCAGGAGAGTGGCACAGGGATGAGAGGACCTCAAGGTGCCAGGAAAGCTGGTCCT-GGCTCCCCAGGAGGAACCGTCACCAGGAAACTCACTCATAAAGCTCATCTATAATAAT-----------------------------------------ACAATTACGGCACATGTGATATAGTAAAATATAACA--------ACA--------AAATAACAAA-AATAACATggcacaactgcaaacacctcatatatggtaacccttatcattc
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         721992 256 +    766320 TAAATATCTATAGTATAAAATATGAAGACAGAATAGAATGGGGTAATGCAGGAGAGTGTGACAGAGATGACAGGACCTCAAGGTGCCAGGAAAGCTGGTCCTGGGCTCCCCACAAGGAGCCATAAGCAGGACACTCACTCATAAAGGTCACCTATAATAAT-----------------------------------------ACAGTTACTGCATATGTAATATA-TCAAATATAATA--------AAA------------AACAAA-AATAATACggcacagctgcaaacacctcatatatattaacccttttcattc
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29209878 254 -  71996105 TAAATATCTATAGTATAAAATATGAAGACAGAATAGAATGGAGTAATGCAGGAGAGTGTGACAGAGATGACAGGACCTCAAGGTGCCAGGAAAGCTGGTTCTGGGCTCCCCACAAGGAGCCATAAGCAGGACACTCACTCATAAAGGTCACCTATAataat-----------------------------------------acaattactgcatatgtaatata-tcaaatataata--------aaa-----------taACAAA----AATATggcacagctgcaagcacctcatatatattaacccttttcattc
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          17908 258 +    273075 TAAATATCTATCGTATAAAATATGAAGACAGAATAGAATGGGGTAATGCAGGAGAGTGTGACAGAGATGACAGGATCTCAAGGTGCCAGGAAAGCTGGTTCTGGGCTCTCCACAAGGAGCCATAAGCAGGACACTCACTCATAAAGGTCACCTataataat-----------------------------------------acaattactgcatatgtaatata-tcaaatataata--------aaa-----------taacaaaaaataaTACggcacagctgcaaacacctcatgtatattaacccttttcattc
i manLeu1.NW_012101121v1       C 0 C 0
s saiBol1.JH378364               116339 259 +    187130 TAAATATCTATAGTATAAAATATAGATACAGAGTAGAATGGAGTAATGCATGAGAGTGTGACAGGG-TGAGGGGACCTCAAGGTACCAGGAAAGCTGGTTTTGGGCTTCCCTGCAGAAGTCGTCACCGGGACATTCACTCATCAAGCTCACCCGTGATGAT-----------------------------------------ACAATTATTGCACATGTCATGTGTTGAAATATGATA--------AAATCATAAC---------AA-AATAACATggcacagctgcaaaaacctcatatatactaaccctttccatcc
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         429252 268 -   1771730 TAAATATCTATAGAATAAAATATAAAGACAGAGTAGAACGGGATAATGTATGAGAGTGTGACAGGG-CAATGGGACCTCAAGGTGCCAGGAAAGTTGGTCCTGGACTCCTCTGTAGGAGCCGTCACCAGGACACTCACTCATAAATCTCACCTGTGATGGT-----------------------------------------ACATATACTGCAAGTGTCATGTATTAAAATATGATA--------AAATCATAACAAAATAATAAA-AATAACATggcacagctgcaagcacctcatagatactaaccctttctatcc
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1         111743 316 -    383796 TAAATATTTACAGTATAAAATATGAAGACAAAGTAGAATGGGGTAATGCATGAGAGTGTGACAGGG-CAAGAGGACCTCAAGGTGCCAGGAAAGTTGGTCCTGGGCTCCCCTGGAGGAGCCGTCACCAGGACACCCACTCATAAAGCCCACCTGTGATGATTACTGCACATGTCatgtattataatatgataaaattactgcacaattactg-acatgtcatgtattataatataataaatataataaatcataacaaaataataaa-aataataTggcacagctgcaagcacctcatatatactaaccctttccatcc
i aotNan1.NW_018496904v1       C 0 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e otoGar3.GL873550             16916395 6066 -  18854210 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2853732 81142 -   3067355 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=530485.000000
s hg38.chr6_GL000254v2_alt      1074911 102 +   4827813 atccaaccacaagaaataaatgc--tcgtagtttccccatgtcatagatgaggaaaatgaggcacaaagagagaacatgctggtgaggcctaggcaaggagttg
s panTro5.chr6                 30040571 102 + 175400573 atccaaccacaagaaataaatgc--tcgtagtttccccatgtcatagatgaggaaaatgaggcacgaagagagaacatgctggtgaggcctaggcaaggagttg
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30271212 102 + 173848474 atccaaccacaagaaataaatgc--tcgtagtttccccatgtcatagatgaggaaaatgaggcacgaagagagaacatgctggtgaggcctaggcaaggagttg
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6079665 102 +   6154872 atccaaccacaagaaataaatgc--tcgtagtttccccatgtcatagatgaggaaaatgaggcacgaagagagaacatgctggtgaggcctaggcaaggagttg
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30514392 102 + 172585720 atccaaccacaagaaataaatac--tgttaatttccccatttcatagataaggaaaccgaggcaccaagagggaaagtgttggtgagacccaggcagggagttg
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   134107 102 +    231697 atccaaccacaagaaataaatac--tgttaatttccccatttcatagataatgaaactgaggcaccaagagggaaagtgttggtgagacccaggcagggagttg
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         722248 102 +    766320 atccagccacaagaaataaatgc--tcatagtttctccatgtcatggatgaggaaactgaggcaccaagagagaacgtgctggtgagacataggcaaggagctg
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29210132 102 -  71996105 atccaaccacaagaaataaatgc--tcatagtttccccatgtcatggatgaggaaactgaggcaccaagagagaacgtgctggtgagacataggcaaggagctg
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          18166 101 +    273075 atccaaccacaagaaataaatgc--tcatagtttccccatgtcatggatgaggaaactgaggcaccaagagagaacgtgctggtgagacataggcaagg-gctg
i manLeu1.NW_012101121v1       C 0 C 0
s saiBol1.JH378364               116598 101 +    187130 acccaactacaagaaacaaatgc--tgctactttc-ctatttcataggtgtggaaactgaggcaccaagagggaaagtgctggtgagacctgggcagggggttc
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         429520 101 -   1771730 acccaaccacaagaaataaatgc--tgttactttc-ctatttcatagatgaggaaactgaggcactaagagggaaagtgctggtgagacctgggcagggggttc
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1         112059 101 -    383796 acccaaccacaagaaatgaatgc--tgttactttc-ctatctcatagatgaggaaactgaggcaccaggagggaacatgcttgtgagacctgggcagggggttc
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16922461 103 -  18854210 atccACaccctagaggtagatgctgtcatgtctgcatcatctcacaaaggaagaaactgaggcaccaggaggaaaagtGCCAGTGAGACC-AGGCACTGGGCTG
i otoGar3.GL873550             I 6066 I 75
e canFam3.chr12                71485912 43737 -  72498081 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2853732 81142 -   3067355 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=273943.000000
s hg38.chr6_GL000254v2_alt      1075013 51 +   4827813 aatccagatcgcctggctgcagagtctagttgccctcaGTGGAGCCAGCGA
s panTro5.chr6                 30040673 51 + 175400573 aatccagaccgcctggctgcagagtctagttgccctcaGTGGAGCCAGCGA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30271314 51 + 173848474 aatccagaccgcctggctgcagagtctagttgccctcaGTGGAGCCAGCGA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6079767 51 +   6154872 aatccagaccgcctggctgcagagtctagatgccctcaGTGGAGCCAGCGA
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30514494 51 + 172585720 aatccaggccacctggctgcagagtctagctgccctcaGTGGCACCAGTGA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   134209 51 +    231697 aatccaggccacctggctgcagagtctagctgccctcaGTGGCACCAGTGA
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         722350 51 +    766320 aatccagaccgcctggctgcagagtctagctgccctcaGTGGAGCCAGCGG
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29210234 51 -  71996105 aatccagaccgcctggctgcagagtctagctgccctcaGTGGAGCCAGCGG
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          18267 51 +    273075 aatccagaccgcctggctgcagagtctagctgccctcaGTGGAGCCAGCGG
i manLeu1.NW_012101121v1       C 0 C 0
s saiBol1.JH378364               116699 51 +    187130 aatccaggccgcctggctgcagagtGTAGGCGCCCTCAGTGGAGCCAGTGG
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         429621 51 -   1771730 aatccaggccgcccggctgcagagtGTAGGAACCCTCAGTGGAGCCAGTGG
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1         112160 51 -    383796 aatcccggccacccggctgcagagtGTGGGTGCCCTCAGTGGAGCCAGTGG
i aotNan1.NW_018496904v1       C 0 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e otoGar3.GL873550             16922564 75 -  18854210 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2853732 81142 -   3067355 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=194752.000000
s hg38.chr6_GL000254v2_alt      1075064 32 +   4827813 ACCCAGGAGCTGACACCAGAGACTGAGATCTC
s panTro5.chr6                 30040724 32 + 175400573 ACCCAGGAGCTGACACCAGAGACTGAGATCTC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30271365 32 + 173848474 ACCCAGGAGCTGACACCAGAGACTGAGATCTC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6079818 32 +   6154872 ACCCAGGAGCTGACACCAGAGACTGAGATCTC
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30514545 32 + 172585720 AACCAGGAGATGACATGGGAGACTGAAATCCC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   134260 32 +    231697 AACCAGGAGATGACATGGGAGACTGAAATCCC
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         722401 32 +    766320 ACCCAGGAGCTGACACCAGAGACTGAGATCTC
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29210285 32 -  71996105 ACCCAGGAGCTGACACCAGAGACTGAGATCTC
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          18318 32 +    273075 ACCCAGGAGCTGACACCAGAGACTGAGATCTC
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2934874 32 -   3067355 ACCCAGGAGCAGACACCAGAGACTGAGATCTC
i colAng1.NW_012115566v1       I 81142 C 0
s saiBol1.JH378364               116750 32 +    187130 ACCCAGGAGCTGACAGCAGAGGCTGAAATCTC
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         429672 32 -   1771730 ACCCAGGAGCTGACAGCAGAGGCTGAAATCCC
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1         112211 32 -    383796 ACCCGGGAGCCGACAGCAGAGACTGAAACCCC
i aotNan1.NW_018496904v1       C 0 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e otoGar3.GL873550             16922564 75 -  18854210 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=8281.000000
s hg38.chr6_GL000254v2_alt      1075096 1 +   4827813 A
s panTro5.chr6                 30040756 1 + 175400573 A
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30271397 1 + 173848474 A
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6079850 1 +   6154872 A
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30514577 1 + 172585720 A
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   134292 1 +    231697 A
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         722433 1 +    766320 A
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29210317 1 -  71996105 A
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          18350 1 +    273075 A
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2934906 1 -   3067355 A
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364               116782 1 +    187130 A
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         429704 1 -   1771730 A
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1         112243 1 -    383796 A
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16922639 1 -  18854210 a
i otoGar3.GL873550             I 75 C 0
e canFam3.chr12                71485912 43737 -  72498081 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=1272917.000000
s hg38.chr6_GL000254v2_alt      1075097 219 +   4827813 GCTGTGCACTGCCCTGGTGGTCTCCTGTCCCAACCAGGTGTTGACCCAGGCCTTGCAGGCTCACGCGCTCTGGAAAAAAGAGAGAAAC------------CAATAAATGCTCCCCTGGGTGCAGAGTGCTGCTTTTTATTCCCTGAGGAGTTCTCCCTCCTCAGTCACTCCCAA-ATCAGATTTACCCTTTCTCTGACGGAAGATGACGTCCCCACTTTTTTCTCCCTCCCA
s panTro5.chr6                 30040757 219 + 175400573 GCTGTGCACTGCCCTGGTGGTCTCCTGTCTCAACCAGGTGTTGACCCAGGCCTTGCAGGCTCACGTGCTCTGGAAAAAAGAGAGAAAC------------CAATAAATGCTCCCCTGGGTGCAGAGTGCTGCTTTTTATTCCCTGAGGATTTCTCCCTCCTCAGTCACTCCCAA-ATCAGATTCACCCTTTCTCTGACGGAAGATGACGTCCCCACTTTTTTCTCCCTCCCA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30271398 219 + 173848474 GCTGTGCACTGCCCTGGTGGTCTCCTGTCTCAACCAGGTGTTGACCCAGGCCTTGCAGGCTCACGTGCTCTGGAAAAAAGAGAGAAAC------------CAATAAATGCTCCCCTGGGTGCAGAGTGCTGCTTTTTATTCCCTGAGGATTTCTCCCTCCTCAGTCACTCCCAA-ATCAGATTCACCCTTTCTCTGACGGAAGATGACGTCCCCACTTTTTTCTCCCTCCCA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6079851 219 +   6154872 GCTGTGCACTGCCCTGGTGGTCTCCTGTCCCAACCAGGTGTTGACCCAGGCCTTGCAGGCTCATGCGCTCTGGAAAAAAGAGAGAAAA------------CAATAAATGCTCCCCTGGGTGCAGAGTGCTGCTTTTTATTCCCTGAGGAGTTCTCCCTCCTCAGTCACTCCCAA-ATCAGATTTACCCTTTCTCTGATGGAAGATGACGTCCCCAATTTTTTCTCCCTCCCA
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30514578 217 + 172585720 GTTGTCCACTGCCCTGGTGGTCTCCTGTCCCAGCCAGGTGTTGATCCAGGCCTTGTAGGTTCCCATGCTCTGGAGAAAAGAGAGAAA-------------CAGTAAATGTTCCACTGGGTGCAGGGCGCTGC-TTTTATTCCCTGAGGACTTCTCCCTCCTCAGTCACTCCAAA-ATCAGATTCACCCTTTCTCTGAGGGAAGATGACGTCCCCACTTTTTTCTCCCTCCCA
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   134293 217 +    231697 GTTGTGCACTGCCCTGGTGGTCTCCTGTCCCAGCCAGGTGTTGATCCGGGCCTTGTAGGTTCCCATGCTCTGGAGAAAAGAGAGAAA-------------CAGTAAATGTTCCACTGGGTGCAGGGCGCTGC-TTTTATTCCCTGAGGACTTCTCCCTCCTCAGTCACTCCAAA-ATCAGATTCACCCTTTCTCTGAGGGAAGATGACGTCCCCACTTTTTTCTCCCTCCCA
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         722434 218 +    766320 GTTGTGCACTGCCCTGGTGGTCTCCTGTCCCAACCACGCGTTGATCCAGGCCTTGCAGGCTCACCAGCTCTGGAGAAAAGAAAGAAA-------------CAGTAAATGTTCCACTGGGTGCAGGGTGCTGCTTTTTATTCCCTGAGGACTTCTCCCTCCTCAGTCACTCCAAA-ATCAGATGCACCCTTTCTCTGAGGGAAGATGATGTCCCCACTTTTTTCTCCCTCCCA
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29210318 218 -  71996105 GCTGTGCACTGCCCTGGTGGTCTCCTGTCCCAGCCAGGTGTTGATCCGGGCCTTGTAGGCTCATCAGCTCTGGAGAAAAGAAAGAAA-------------CAGTAAATGCTCCCCTGGGTGCAGGGCGCTGCTTTTTATTCCCTAAGGACTTCTCCCTCCTCAGTCACTCCAAA-ATCAGATGCACCCTTTCTCTGAGGGAAGATGATGTCCCCACTTTTTTCTCCCTCCCA
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          18351 218 +    273075 GCTGTGCACTGCCCTGGTGGTCTCCTGTCCCAACCAGGTGTTGATCCAGGCCTTGTAGGCTCATCAGCTCTGGAGAAAAGAAAGAAA-------------CAGTAAATGCTCCACTGGGTGCAGGGCGCTGCTTTTTATTCCCTAAGGACTTCTCCCTCCTCAGTCACTCCAAA-ATCAGATGCACCCTTTCTCTGAGGGAAGATGACATCCCCACTTTTTTCTCCCTCCCA
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2934907 216 -   3067355 GCTGTGCACTGCCCTGGTGGTCTCCTGTCCCAACCAGGTGTTGATCCAGGCCTTGTAGGCTCATCAGCTCTGGATTAAAGAAAGAAA-------------CAGTAAATGCTCCCCTGGGTGCAGAGCGCTGCTTTTTATTCCCTGAGGACTTCTCCCTCCTCAGTCACTGCAAA-ATCAGATGCACCCTTTCTCTGAGGGAAGATGATGTCCCCAC--TTTTCTCCCTCCCA
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364               116783 215 +    187130 GCTGTGCGGTGCCCTGGTGCTCTCCTGTC-CAGTTGGGTGTTGATCTGGGCCTTGTAGGCTCACAAGCTCTGGAGAAAAGAGAAAAAA------------CAGTAAATACTCCACTGGGTTCAGAGTGCTGCTTTTCATTCCCTGAGGACTTCTCCCTCCTCAGTCACTCCGAA-ATCAGATTCACCCTTTCTCTGAGGAATGATG--GTCTG-GCTTTTTTCTCCCACCCA
i saiBol1.JH378364             C 0 T 85044
s cebCap1.NW_016107755v1         429705 200 -   1771730 GCCGTGCGGTGCCCTGGTGCTCTCCTGTC-CAGTCAGGTGTTGATCTGGGCCTTGTAGTCTCACACACTCGGG-----------AAAA------------GAGTTAGTGCTCCACTGGGTGCAGA------TGTTTTATTCCCTGAGGACTTCTGCCTTCTCAGTCACTCCGAA-ATCAGATTCACCGTTTCTCTGAGGGAAGATA-TGTCTGTGCTTCTTTCTCCCACCCA
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1         112244 200 -    383796 GCTGTGCGGTGCCCTGGTGCTCTCCTGTC-CAGTCGGGTGTTGATCTGGGCCTTGTAGGCTCACACACTCGGG-----------AAAA------------GAGTTAGTGCTCTACTGGGTGCAGA------TGTTCTATTCCCTGAGGACTTCTGCCTTCTCAGTCACTCCGAA-ATCAGATTCACCCTTTCTCTGAGGGAAGGTA-TGTCTGTGCTTGTTTCTCCCACCCA
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16922640 200 -  18854210 gtagggcactggccccata------tgccggagatgggttcaaacccagtccctgc-------------caaaaaaaaaaaaaGACAACATGATCAACAGCAATGAGTGGT----TGGGTAGGAAAC----CTTTGTATGCTCTCAGGA----TACTCCCTCAGTCTCTCCAGACATCAAGCCATGACTTAAGCTCAAAAGAAGAAATGTCCAC-CTTGATTCTTCTGCCCA
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                71529649 208 -  72498081 GCTGGTTGCTGCCATCATGGCTTGTTGGTGCTACCTGGTGTTGATCCAGGTCTTGAAGGCTACCAAGATTTTGGGGAAA-AGAGAAAC------------CCATAGA--GCCCAATTTGTGCAAAATATTGTTTTGCACTTGCTCAGAACTTCT------TCAGTTACTCCAAA-TTCAGCTCTG-ACTTTCTCTGAAGGAGGATAA-ACCCTTGCTGTTATCTCTCTCTCA
i canFam3.chr12                I 43737 C 0
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=574391.000000
s hg38.chr6_GL000254v2_alt      1075316  99 +   4827813 TCGCACTTTT-CCAGCCCCTGCCAGTCCCCTC-CCGTGACTCCATCAACATCAGCACCT-GCCC-TGTGTCCACCATCCATTGT-GCAGT-GAGTGAAAGGACC-C
s panTro5.chr6                 30040976  99 + 175400573 TGGCACTTTT-CCAGCCCCTGCCAGTCCCCTC-CCGTGACTCCATCAACATCAGCACCT-GCCC-TGTGTCCACCATCCATTGT-GCAGT-GAGTGAAAGGACC-C
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30271617  99 + 173848474 TGGCACTTTT-CCAGCCCCTGCCAGTCCCCTC-CCGTGACTCCATCAACATCAGCACCT-GCCC-TGTGTCCACCATCCATTGT-GCAGT-GAGTGAAAGGACC-C
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6080070  99 +   6154872 TGGCACTTTT-CCAGCCCCTGCCAGTCCCCTC-CCATGACTCCATCAACATCAGCACCT-GCCC-TGTGTCCACCATCCATTGT-GCAGT-GAGTGAAAGGACC-C
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30514795 101 + 172585720 TGATACTTTTCCCAGCCCCTGCCAGTCCCCTC-CCATGACTCTATCAGCATCAGCACCT-GCCC-TGTGCCCAGCACCCATCGT-ACAGG-GAGTGAAAGGACCCC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   134510 101 +    231697 TGATACTTTTCCCAGCCCCTGCCAGTCCCCTC-CCATGACTCCATCAGCATCAGCACCT-GCCC-TGTGCCCAGCACCCATCGT-ACAGG-GAGTGAAAGGACCCC
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         722652 102 +    766320 TGACACTTTTCCCAGCCCCTGCCAGTGCCCTC-CCGTGACTCCATCAGCATCAGGACCT-GCCC-TGTGCCCAGCACCCACCCCGGCAAT-GAGTGAAAGGACCCC
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29210536 101 -  71996105 TGACACTTTTCCCAGCCCCTGCCAGTCCCCTC-CCGTGACTCCATCAGCATCAGCACCT-GCCC-CGTGCCCAGCACCCATCTG-GCAAT-GAGTGAAAGGACCCC
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          18569 101 +    273075 TGACACTTTTCCCAGCCCCTGCCAGTCCCCTC-CCATGATTCCATCAGCATCAGCACCT-GCCC-TGTGCCCAGCACCCATGGT-GCAGG-GAGTGAAAGGACCCC
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2935123 102 -   3067355 TGACACTTTTCCCAGCCCCTGCCAGTCCCCTC-CCATGACTCCATCAGCATCAGCACCT-GCCCTTGTGCCCAGCACCCATCCG-GCAAT-GAGTGAAAGGACCTC
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364                31954  95 +    187130 -----TTTTTCCCAGTCCCAGGCAGTTTCCTC-CCTCGACTCCATCAACATCGTCACCT-GCCT-GACGCACAGCACCTACCAT-GTGAG-GAGTGAAAAGGTCC-
i saiBol1.JH378364             T 85044 I 1
s cebCap1.NW_016107755v1         429905  99 -   1771730 GGGCACTTTTCCCAGCCCCTGCCAGTCCCCTC-CCATGACTCCATCAACATCTGCCCCC-ACCC-TGTGCCCACCACCCACCAT-GCAAG-GTG-GAAAAAGCCC-
i cebCap1.NW_016107755v1       C 0 I 34
s aotNan1.NW_018496904v1         112444 100 -    383796 GGGCAATTTTCCCAGCCCCTGCCAGTCCCCTC-CCGTGACTCCATCAACATCAGCCCCT-GCCC-TGTGCCCACCACCCACCAT-GCAAG-GTGGAAAAAAGCCC-
i aotNan1.NW_018496904v1       C 0 I 1
s otoGar3.GL873550             16922840  97 -  18854210 -GCCTGCTTTTCAGGGCCCCATCAGTCTCCTC-CTGCAACTCCATCAAAAAGGGCACCT-GATC-TGTGCTCACCATCTGCCCC-G---T-GGGTGAAAGGGCTGC
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                71529857 100 -  72498081 ---CCCCTTTACCAGCCCTTGCTGCCCTCCCCACTGTGATGCC-TCAGCATCACTAGCTGGCCC-TGCCTCCACCATCTACTGG-ACAGGAGCAGGAAAGGGTCCC
i canFam3.chr12                C 0 C 0
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=92422.000000
s hg38.chr6_GL000254v2_alt      1075415 16 +   4827813 AGGACTAAGGAACAAG
s panTro5.chr6                 30041075 16 + 175400573 AGGACTAAGGAACAAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30271716 16 + 173848474 AGGACTAAGGAACAAG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6080169 15 +   6154872 AGGACTAA-GAACAAG
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30514896 16 + 172585720 AGGACTAAAGAACAAG
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   134611 16 +    231697 AGGACTAAAGAACAAG
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         722754 16 +    766320 AGGACTCAGGAACAAG
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29210637 16 -  71996105 AGGACTCAGGAACAAG
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          18670 16 +    273075 CGGACTAAAGAACAAG
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2935225 16 -   3067355 CGGACTCAGGAACAAG
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364                32050 16 +    187130 AGGACTAAAGGACAAG
i saiBol1.JH378364             I 1 I 84999
s aotNan1.NW_018496904v1         112545 16 -    383796 AGGTCTAAAGGACAAG
i aotNan1.NW_018496904v1       I 1 C 0
s otoGar3.GL873550             16922937 16 -  18854210 AGAACTAAAGGCCAAG
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                71529957 15 -  72498081 AGGACCAA-GGACAAC
i canFam3.chr12                C 0 C 0
e cebCap1.NW_016107755v1         430004 34 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=63370.000000
s hg38.chr6_GL000254v2_alt      1075431 13 +   4827813 ACCCAAGAGGAAA--
s panTro5.chr6                 30041091 13 + 175400573 ACCCAGGAGGAAA--
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30271732 13 + 173848474 ACCCAGGAGGAAA--
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6080184 13 +   6154872 ACCCAGGAGGAAA--
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30514912 13 + 172585720 ACCCAGGAGGTAA--
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   134627 13 +    231697 ACCCAGGAGGTAA--
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         722770 13 +    766320 ACCCAGGAGGAAA--
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29210653 13 -  71996105 ACCCAGGAGGAAA--
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          18686 13 +    273075 ACCCAGGAGGAAA--
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2935241 13 -   3067355 ACCCAGGAGGAAA--
i colAng1.NW_012115566v1       C 0 C 0
s aotNan1.NW_018496904v1         112561 13 -    383796 ACCTGGGAGAAAA--
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16922953 12 -  18854210 ACCTGGCAGGAA---
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                71529972 15 -  72498081 ACCCTGGAGCAGAAA
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364                32066 84999 +    187130 I
e cebCap1.NW_016107755v1         430004 34 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=63888.000000
s hg38.chr6_GL000254v2_alt      1075444 14 +   4827813 CTCAGTGCCCTTTC
s panTro5.chr6                 30041104 14 + 175400573 CTCAGTGCCCTTTC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30271745 14 + 173848474 CTCAGTGCCCTTTC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6080197 14 +   6154872 TTCAGTGCCCTTTC
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30514925 11 + 172585720 CTCAATGCCCT---
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   134640 11 +    231697 CTCAATGCCCT---
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         722783 14 +    766320 CTCAGTGCCCTTTC
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29210666 14 -  71996105 CTCAGTGCCCTTTC
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          18699 11 +    273075 CTCAGTGCCCT---
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2935254 14 -   3067355 CTCAGTGCCCTTTC
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364               117065 11 +    187130 CCCGGTGCCCT---
i saiBol1.JH378364             I 84999 C 0
s aotNan1.NW_018496904v1         112574 11 -    383796 CTCAGTGCCCT---
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             16922965 12 -  18854210 CCCAGTGCCCTC--
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                71529987 11 -  72498081 CTCAATGCCTT---
i canFam3.chr12                C 0 C 0
e cebCap1.NW_016107755v1         430004 34 -   1771730 I
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=389822.000000
s hg38.chr6_GL000254v2_alt      1075458 80 +   4827813 CTCCTCCTCTCAAGCCTGACCAGCCCTGACACAGTGAGAGGC---------CTCCCCAAAGAGAGGCCCTGGCCCTGTCTCCATGTCC--T
s panTro5.chr6                 30041118 80 + 175400573 CTCCTCCTCTGAAGCCTGACCAGCCCTGACACAGTGAGAGGC---------CTCCCCAAAGAGAGGCCCTGGCCCTGTCTCCATGTCC--T
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30271759 80 + 173848474 CTCCTCCTCTGAAGCCTGACCAGCCCTGACACAGTGAGAGGC---------CTCCCCAAAGAGAGGCCCTGGCCCTGTCTCCATGTCC--T
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6080211 80 +   6154872 CTCCTCCTCTCAAGCCTGACCAGCCCTGACACAGTGAGAGGC---------CTCCCCAAAGAGAGGCCCTGGCCCTGTCTCCATGTCC--T
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30514936 79 + 172585720 CCCCTCCTCTCACGCCTGACCAGCCCTGACACAGTGGGAGGC---------CTTCCCAAAGAGAGGCCCTGGCCCTATCTCCATGTCC---
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   134651 79 +    231697 CCCCTCCTCTCACGCCTGACCAGCCCTGACACAGTGGGAGGC---------CTCCCCAAAGAGAGGCCCTGGCCCTATCTCCATGTCC---
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         722797 78 +    766320 CTCCTCCTCTCACACCTGACCAGCCCTGACACAGTGGGAGGC---------CTCCCC-AAGAGAGGTCCTGGCCGTGTCTCCATGTCC---
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29210680 78 -  71996105 CTCCTCCTCTCATGCCTGACCAGCCCTGACACAGTGGGAGGC---------CTCCCC-AAGAGAGGCCCTGGCCGTGTCTCCATGTCC---
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          18710 78 +    273075 CCCCTCCTCTCACGCCTGACCAGCCCTGACACAGTGGGAGGC---------C-CCCA-AAGAGAGGCCCTGGCCCTATCTCCATGTCCT--
i manLeu1.NW_012101121v1       C 0 I 19
s colAng1.NW_012115566v1        2935268 79 -   3067355 CTCCTCCTCTCACGCCTGACCAGCCCTGACCCAGTGGGAGGC---------CTCCCC-AAGAGAGGCCCTGGCTGTGTCTCCATGTCC-T-
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364               117076 84 +    187130 CCCCTCCTCTCA--CCTGGCCAGCTCTGA--CAGCAGGAGGACCACCCCCCCCCCCCAAGGACAGTTCCTGGCCCTGGCTCCATGTCC---
i saiBol1.JH378364             C 0 I 1
s cebCap1.NW_016107755v1         430038 77 -   1771730 CCCCTCCTCTAAAGCCTGGCCAGCTCCGA--TAGCAGGAGGA---------CTCCCCAAAGACAGTTCCTGACCCTGGCTCCATGTCC---
i cebCap1.NW_016107755v1       I 34 I 1
s aotNan1.NW_018496904v1         112585 77 -    383796 CCCCTCCTTTCAAGCCTGGTCAGCTCTGA--CAGCGGGAGGA---------ATCCCCAAAGACGGTCCCTGGCCCTGGCTCCATGTCC---
i aotNan1.NW_018496904v1       C 0 I 1
s otoGar3.GL873550             16922977 31 -  18854210 -----------------------CTCCAGCACAGGGAGATGC---------CTCCCCAAAGAG----------------------------
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                71529998 66 -  72498081 --CTTGGTCCCAA--CTGTCCA---CTGACAGAGAACATGGC---------CCCT---GAGAGA---CATGTCCCTGTGGCCTGTTCC---
i canFam3.chr12                C 0 C 0
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=94002.000000
s hg38.chr6_GL000254v2_alt      1075538 18 +   4827813 TCCAGGTCTGGGCCAAGT
s panTro5.chr6                 30041198 18 + 175400573 TCCAGGTCTGGGCCAAGT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30271839 18 + 173848474 TCCAGGTCTGGGCCAAGT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6080291 18 +   6154872 TCCAGGTCTGGGCCAAGT
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30515015 18 + 172585720 TCCAGTCCTGGGCTGGGT
i rheMac8.chr4                 C 0 I 2
s macFas5.chr4_KE145577_random   134730 18 +    231697 TCCAGTCCTGGGCTGGGT
i macFas5.chr4_KE145577_random C 0 I 2
s cerAty1.NW_012002711v1         722875 18 +    766320 TCTAGTCCTGGGCTGGGT
i cerAty1.NW_012002711v1       C 0 I 2
s chlSab2.chr17                29210758 18 -  71996105 TCCAGTCCTGGGCTGGGT
i chlSab2.chr17                C 0 I 2
s colAng1.NW_012115566v1        2935347 17 -   3067355 -CCAGTCCTGGGCTGGGT
i colAng1.NW_012115566v1       C 0 I 2
s saiBol1.JH378364               117161 18 +    187130 TCCAGGCCTGGACTGGGT
i saiBol1.JH378364             I 1 I 2
s cebCap1.NW_016107755v1         430116 18 -   1771730 TCCAGGCCAGGGCTGCGT
i cebCap1.NW_016107755v1       I 1 I 2
s aotNan1.NW_018496904v1         112663 18 -    383796 TCCAGTTCTGGGCTGGGT
i aotNan1.NW_018496904v1       I 1 I 2
s otoGar3.GL873550             16923008 13 -  18854210 -----GCCTGGACTGGGT
i otoGar3.GL873550             C 0 C 0
s canFam3.chr12                71530064 18 -  72498081 TCCAGGCCAGACAGTGGT
i canFam3.chr12                C 0 C 0
e calJac3.chr4                 30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1          18788 19 +    273075 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=1709748.000000
s hg38.chr6_GL000254v2_alt      1075556 263 +   4827813 CACACACA----GTCCTTCTCTTCCTGAGACCCCAGGCCCTCTTCACCTGCAGAGGCACCTGCATACCAGGGCAGGCCCTGCACACTGTGGGTTCTGCCCTCCACCAGCAGC-TCACTGTTCCTCCCCTCCCAGCTCTGAGCAGACAGCTCCTAACAAGAGATCCTATCAGGAAGCCCTGGGG-CTCA-CAGGCCCGGCATGGAAATATGTGGCTGCCATGGAGTCTGCACCTGACCTGATGCTGGGGACCCCCTTGCTCAAGGAGGCCC
s panTro5.chr6                 30041216 265 + 175400573 CACACACACA--GTCCTTCTCTTCCTGAGACCCCAGGCCCTCTTCACCTGCAGAGGCACCTGCACACCAGGGCAGGCCCTGCACACTGTGGGTTCTGCCCTCCACCAGCAGC-TCACTGTTCCTCCCCTCCCAGCTCTGAGCAGACAGCTCCTAACTAGAGATCCCATCAGGAAGCCCTGGGG-CTCA-CAGGCCCGGCATGGAAATATGTGGCTGCCATGGAGTCTGCACCTGACCTGATGCTGGGGACCCCCTTGCTCAAGGAGGCCC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30271857 265 + 173848474 CACACACACA--GTCCTTCTCTTCCTGAGACCCCAGGCCCTCTTCACCTGCAGAGGCACCTGCACACCAGGGCAGGCCCTGCACACTGTGGGTTCTGCCCTCCACCAGCAGC-TCACTGTTCCTCCCCTCCCAGCTCTGAGCAGACAGCTCCTAACTAGAGATCCCATCAGGAAGCCCTGGGG-CTCA-CAGGCCCGGCATGGAAATATGTGGCTGCCATGGAGTCTGCACCTGACCTGATGCTGGGGACCCCCTTGCTCAAGGAGGCCC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6080309 263 +   6154872 CACACACA----GTCCTTCTCTTCCTGAGACCCCAGGCCCTCTTCACCTGCAGAGGCACCTGCACACCAGGGCAGGCCCTGCACACTGTGGGTTCTGCCCTCCACCAGCAGC-TCACTGTTCCTCCCCTCCCAGCTCTGAGCAGACAGCTCCTAACTAGAGATCCCATCAGGAAGCCCTGGGG-CTCA-CAGGCCCGGCATGGAAATATGTGGCTGCCATGGAGTCTGCACCTGACCTGATGCTGGGGACCCCCTTGCTCAAGGAGGCCC
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30515035 262 + 172585720 CACACACACGGGGTCCTTCTCCCCTTCAGTCCCCAGGCCCTCCTCATCTGCGGAGGCACCTGCACACCAGGGCAGACCCTGCACATTGTGGGTTCTATCCTCCACCTGCAGC-TCAGCGTTTCTCCCCTCCCAGCTCTGAGCAGGCAGCTTCTAATGGGAGATCCCATCAGGAAGCCCTGGAG-CTCA-CAGGGCCAGCATGGAAATACGTGGCTG-GATGGAGTCTGCAGCTGACCTGATGCTGGGGACCCCCTTGCTCAAGGAG----
i rheMac8.chr4                 I 2 C 0
s macFas5.chr4_KE145577_random   134750 262 +    231697 CACACACACGGGGTCCTTCTCCCCTTCAGTCCCCAGGCCCTCCTCATCTGCGGAGGCACCTGCACACCAGGGCAGACCCTGCACATTGTGGGTTCTATCCTCCACCTGCAGC-TCAGCGTTCCTCCCCTCCCAGCTCTGAGCAGGCAGCTTCTAATGGGAGATCCCATCAGGAAGCCCTGGAG-CTCA-CAGGGCCAGCATGGAAATACGTGGCTG-GATGGAGTCTGCAGCTGACCTGATGCTGGGGACCCCCTTGCTCAAGGAG----
i macFas5.chr4_KE145577_random I 2 C 0
s cerAty1.NW_012002711v1         722895 262 +    766320 CACACACA----GTCCTT-TACCCCTCAGACCCCAGGACCTCCTCATCTGCGGAGGCACCTGCACACTAGGGCAGACCCTGCACACTGTGGGTTCTGCCCTCCACCTGCAGC-TCAGCGTTCCTCCCCTCCCAGCTCTGAGCACACAGCTCCTAACTGGAGATCCCATCAGGAAGCCCTGGGG-CTCA-CAGGCCCAGCGTGGAAATATGTGGCTGCCATGGAGTCTGCACCTGACCTGATGCTGGTGATTCCCTTGCTCAAGGAGGCCC
i cerAty1.NW_012002711v1       I 2 C 0
s chlSab2.chr17                29210778 263 -  71996105 CACACACA----GTCCTTCCACCCCTCAGACCCCAGGACCTCCTCATCTGCGGAGGCACCTGCACACTAGGGCAGACCCTGCACACTGTGGGTTCTGCCCTCCACCTGCAGC-TCAGCTTTCCTCCCCTCTCAGCTCTGAGCACACAGCTCCTAACTGGAGATCCCATCAGGAAGCCCTGGGG-CTCA-CAGGCCCAGCGTGGAAATATGTGGCTGCCGTGGAGTCTGCACCTGACCTGATGCTGCTGATTCCCTTGCTCAAGGAGGCCC
i chlSab2.chr17                I 2 C 0
s manLeu1.NW_012101121v1          18807 263 +    273075 CACACACA----GTCCTTCTACCCCTCAGACCCCAGGACCTCCTCATCTGCGGAGGCACCTGCACACTAGGGCAGGCCCTGCACACTGTGGGTTCTGCCCTCCACCTGCAGC-TCAGAGTTCCTCCCCTCCCAGCTCTGAGCACACAGCTCCTAACTGGAGATCCCATCAGGAAGCCCTGGGG-CTCA-CAGGCCCAGCATGGAAATATGTGGCTGCCATGGAGTCTGCACCTGACCCGACGTTGCTGATTCCCTTGCTCAAGGAGGCCC
i manLeu1.NW_012101121v1       I 19 C 0
s colAng1.NW_012115566v1        2935366 263 -   3067355 CACACACA----GTCCTTCTACCTCTCAGACCCCAGGACCTCCTCATCTGCAGAGACACCTGTACACTAGGGCAGGCCCTGCACACTGTGGGTTCTGCCCTCCACCTGCAGC-TCAGCGTTCCTCCCCTCCCAGCTCTGAGCACACAGCTCCTAACTGGAGATTCCATCAGGAAGCCCTGGGG-CTCA-CAGGCCCAGCGTGGAAATATGTGGCTGCCATGGAGTCTGCACCTGATGTGATGTTGGTGATTCCCTTGCTCAAGGAGGCCC
i colAng1.NW_012115566v1       I 2 C 0
s saiBol1.JH378364               117181 259 +    187130 CACACACA----GTCCTTCTCCCCCTCAGTCCCCAGTCCCACGTCACCTGCAGAGGCACCTGCACACCA-GGCAGGCTCTGCACACTGC-GGCTCTGCCCC---CCTGCAGC-TCAGCGCTCCTCCCCTCCCAGCCCTGAGCAGGCAGCTCCTAACTGGGCAACATGTTAAGAAGCCCACTGG-CAAAGCTGGCCCAGCATGAAAACATGTGGCTGCCATGGGGTCTGCAGCTGACCTGACCCTGGGGACCCCCTTGCTCAAGGAGGCCC
i saiBol1.JH378364             I 2 C 0
s cebCap1.NW_016107755v1         430136 261 -   1771730 CACACACA----GTCCTTCT-CCCCTCAGTTCCCAGTCCCACCTCACCGGCAGAGGCACCTGCACATGA-GGTAGACCCTGTACACTGC-GGCTCTGCCCTCCACCTGCAGC-TCAGCGCTCCTCCCCTCCCAGACCTGAGCAGGCAGCTCCTAACTGGGCAGCCCATTAAGAAGCCCACTGG-CACAGCTGGCCAAGCATGGAAATATGTTCCTGCCATGGAGTCTGCAGCTCACCTGACCCTGGGGACCCCCTTGTTCAAGGAGGCCC
i cebCap1.NW_016107755v1       I 2 C 0
s aotNan1.NW_018496904v1         112683 262 -    383796 CACACACA----GTCCTTCTCCCCCTCAGTCCCCAGTCCCACCTCACCTGCAGAGGCACCTGTACACCA-GGCAGGCCCTGCACACTGT-GGCTCTGCCCTCCACCTGCAGC-TCAGCGCTCCTCCCCTCCCAGCCCTGAGCAGGCAGCTCCTAACTGGGCAGCCTATTAAGAAGCCCATCAG-CAAAGCTGGCTCAGCATGGAAACATGTGGCTGCCATGGGGTCTGCAGCTCACCTGACCCTGGAGACCCCCTTGCTCAAGGAGGCCC
i aotNan1.NW_018496904v1       I 2 C 0
s otoGar3.GL873550             16923021 261 -  18854210 CACCCTTGAA--GTCCTTCT--GCCTCAGGCTCCAGGACTCCCTCACCTGCAGTGGCACCTGCTCACCAGGG-GGGCTCTGGGTACTGTGGGGTCTGCTCTTTGCCTGTAGC-CCA-CACGACTCCCTCCCCACCTCTGAACCAGCAGCTCCTAACTGGACAGCCTAGCATGAAGCCTGAGGGACCCA-CAGGCCTGGCACTGAAACATGTCACTGCCACTAGGTCTATACCTGACTGGACCCTAGGG-CCTCCAGGCTCAAGGAGGTCC
i otoGar3.GL873550             C 0 N 0
s canFam3.chr12                71530082 254 -  72498081 TACAAACA----CTGCTTCT--TCTCTATCTGTCAGGCTC---TCATTTGCATAAACACCTGAGCACAG----AGACCTCTCA-ACCACAAGCACTGACCT-CACCTGCAGCTTCAGCCTCCTTCCTTCCCTAGCCCTAAGCCAGCAGCTCCTAACTGGAAGGCTCATCAGAGTGCTCAGGTG-ACCACCAGTCACAGTCTAGAAGAAGTGGACTACAGTGGGGTCTGTATTTGACCTGACTCAGGAGCACCCCATGCTCACAGAGGCCT
i canFam3.chr12                C 0 C 0
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=2624993.000000
s hg38.chr6_GL000254v2_alt      1075819 447 +   4827813 -AGCCTGCCCTC--------------------CCCATAACCTGCATTTGGGCTGTGCTTGCTCCTGCCT-GTCCACTCAACCCTGGAAATGCAGCTCCACCCCAGGGCTGCTGCTTGG-T-GAGGCTG-CAA-GCCCTTCCTGTCCC-ATTCCT-AA-------------CAGGGATTCCACCCAGGCCACTGCCATCGCAGCTCACAGGGGATCTTCTTCG----CCTGTGGAGTAG-GGGGTTTCTTCAGACCCCTCATCCTGAGGCTGCCTCTACGCACCCTCTGCACCTGGGGATTGCCACTGCCACAGGCA-----CTGTCTCCCACATGG-ACCCTCTGAGAAACGAA---GCCCCAAATTTGACTTCCTGTTCTATTCAACATCCTTTACAACATCAGTATTGGGGGAAATCCTATTAAGATTATCCAGCTGAAATTATG------TTGAT--GGACACCAATACTTAAAGCAGGAATTTTGAGAAACTAACATGTAATTTTC
s panTro5.chr6                 30041481 447 + 175400573 -AGCCTGCCCTC--------------------CCCATAACCTGCATTTGGGCTGTGCTTGCTCCTGCCT-GTCCACTCAACCCTGGAAATGCAGCTCCACCCCAGGGCTGCTGCTTGG-T-GAGGCTG-CAA-GCCCTTCCTGTCCC-ATTCCT-AA-------------CAGGGATTCCACCCAGGCCACTGCCATCGCAGCTCACAGGGGATCTTCTTCG----CCTGTGGAGTAG-GGGATTTCTTCAGACCCCTCATCCTGAGGCTGCCTCTACGCACCCTCTGCACCTGGGGATTGCCACTGCCACAGGCA-----CTGTCTCCCACATGG-ACCCTCTGAGAAACGAA---GCCCCAAATTTGACTTCCTGTTCTATTCAACATCCTTTACAACATCAGTATTGGAGGAAATCCTATTAAGATTATCCAGCTGAAATTATG------TTGAT--GGACACCAATACTTAAAGCAGGAATTTTGAGAAACTAACATGTAATTTTC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30272122 447 + 173848474 -AGCCTGCCCTC--------------------CCCATAACCTGCATTTGGGCTGTGCTTGCTCCTGCCT-GTCCACTCAACCCTGGAAATGCAGCTCCACCCCAGGGCTGCTGCTTGG-T-GAGGCTG-CAA-GCCCTTCCTGTCCC-ATTCCT-AA-------------CAGGGATTCCACCCAGGCCACTGCCATCGCAGCTCACAGGGGATCTTCTTCG----CCTGTGGAGTAG-GGGATTTCTTCAGACCCCTCATCCTGAGGCTGCCTGTACGCACCCTCTGCACCTGGGGATTGCCACTGCCACAGGCA-----CTGTCTCCCACATGG-ACCCTCTGAGAAACGAA---GCCCCAAATTTGACTTCCTGTTCTATTCAACATCCTTTACAACATCAGTATTGGAGGAAATCCTATTAAGATTATCCAGCTGAAATTATG------TTGAT--GGACACCAATACTTAAAGCAGGAATTTTGAGAAACTAACATGTAATTTTC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6080572 448 +   6154872 -AGCCTGCCCTC--------------------CCCATAACCTGCATTTGGGCTGTGCTTGCTCCTGCCT-GTCCACTCAACCCTGGAAATGCAGCTCCACCCCAGGGCTGCTGCTTGG-T-GAGGCTG-CAA-GCCCTTCCTGTCCC-ATTCCTGGG-------------CCTGGATTCCACCCAGGCCACTGCCATCGCAGCTCACAGGGGATCTTCTTTG----CCTGTGGAGTAG-GGGGTTTCTTCAGACCCCTCATCCTGAGGCTGCCTCTACGCACCCTCTGCACCTGGGGATTGCCACTGCCACAGGCA-----CCGTCTCCCACATGG-ACCCTCTGAGAAATGAA---GCCCCAAATTTGACTTCCTGTTCTATTCAACATCCTTTACAACATGAGTATTGGAGGACATCCTATTAAGATTATCCAGCTGAAATTATG------TTGAT--GGACACCAATACTTAAAGCAGGAATTTTGAGAAACTAACATGTAATTTTC
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30515297 447 + 172585720 --CCCTCCCCTC--------------------CCCATAACCTACACTTGGGCTGTGATTGCCCCTGCCTGGTGCACTCATCCCAGGAATCGCAGCTCCATCCCAGAACTGCTGCTTCG-T-GAGACTG-CAC-AGCCTTCCTGCCGT-GTTCCT-AG-------------CAGGGATTCCACCCAGGCCACTGCCATTGCAGCCCACAGGGGATCTTCTCCTTCTCCTTGTGCAGTAG-GGGGTTTCTTCAGACCCCTCATCCTGAGGCTGCCTC----CACCCTCTGCACCTGGTTATTGCCACTGCCACAGCCA-----CAGTCTCCCACATGA-ACCCTCCGAGAAAGGAA---GCTCCAAATTTGAGTTCCTGTTCCACTCAACATGCTTTACAGCATCAGTATTGGAGGACATCTTATTAAGATTATCCAGCTGAAATTATG------TTGAT--GGACATCAACATTTAAAGCAGGAATTTTAAGAAATTAACTTGTGATTTTC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   135012 447 +    231697 --CCCTCCCCTC--------------------CCCATAACCTACACCTGGGCTGTGATTGCCCCTGCCTGGTGCACTCATCCCAGGAATCGCAGCTCCATCCCAGAACTGCTGCTTCG-T-GAGGCTG-CAC-AGCCTTCCTGCCGT-GTTCCT-AG-------------CAGGGATTCCACCCAGGCCACTGCCATTGCAGCTCACAGGGGATCTTCTCCTTCTCCTTGTGGAGTAG-GGGGTTTCTTCAGACCCCTCATCCTGAGGCTGCCTC----CACCCTCTGCACCTGGTTATTGCCACTGCCACAGCCA-----CAGTCTCCCACATGG-ACCCTCCGAGAAAGGAA---GCTCCAAATTTGAGTTCCTGTTCCACTCAACATGCTTTACAGCATCAGTATTGGAGGACATCTTATTAAGATTATCCAGCTGAAATTATG------TTGAT--GGACATCAACATTTAAAGCAGGAATTTTGAGAAATTAACTTGTGATTTTC
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         723157 451 +    766320 -AGCCTCCCCTC--------------------CTCATAACCTGCATATGGGCTGTGTTTGTTCCTGCCT-GTCCACTCACCCCTGGAAATGCAGTTCCACCCCAGGGCTGCTGCTTAG-T-GGGGTTG-CAA-GCCCTTCCTGTCCC-GTTCCT-AA-------------TAGGGCTTCCACCCAGGCCACTGCCATTGCTGCCCACAGGGGATCTTCTCCTACTCCTTGTGCAGTAG-GGGGTTTCTTCAGACCCCTCAGCCTGAGGCTGCCTCTATGCACTCTCTGCACCTGGGGACTGCCACTGCCACAGGCA-----CCATCTCCCACATGG-ATCCTCTGAGAAAGGAA---GCTCTAAACTTGTGTTCCTGTTCCATTCAACGTCCCTTACAACATCAGTATTGGAGGACATCCTATTAAGATTCTCCAGCTGAAATTATG------TTGAT--GGACATCAACATTTAAAGCAGGAATTTTGAGAAATTAACATGTGATTTTC
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29211041 447 -  71996105 -AGCCTCCCCTC--------------------CCCATAACCTGCATATGGGCTGTGCTTGTTCCTGCCT-GTCCACTCACCCCTGGAAATGCAGCTCCACCCCAGGGCTGCTGCTTAG-T-GGGGTTG-CAA-GCCCTTCCTGTCCA-GTTCCT-AA-------------TAGGGCTTCTACCCAGGCCACTGCCATTGGTGCCCACAGGGGATCTTCTCCTTCTCCTTGTGGAGTAG-GGGGTTTCTTCAGACCCCTCAGCCTGAGGCTGCCTC----CACCCTCTGCACCTGGGGATTGCCACTGCCACAGGCA-----CCATCTCCCACATGG-ATCCTCTGAGAAAGGAA---GCTCTAAACTTGAGTTCCTGTTCCATTCAACGTCCCTTACAACATCAGTATTGGAGGACATCCTATTAAGATTATCCAGCTGAAATTATG------TTGAT--GGACATCAACATTTAAAGCAGGAATTTTGAGAAGTTAACATGTGATTTTC
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          19070 451 +    273075 -AACCTCCCCTC--------------------CCCATAACCTGCATATGGGCTGTGCTTGCACCTGCCT-GTCCACTCACCCCTGGAAATGCAGTTCCACCCCAGGGCTGCTGCTTAG-T-GGGGTTG-CAA-GCCCTTCCTGTCCC-GTTCCT-AA-------------CAGGGATTCCACCCAGGCCACTGCCATGGCTGCCCACAGGAGATCTTCTCCTTCCCCTTGTGCAGTAG-GGGGTTTCTTCAGACCCCTCAGCCTGAGGCTGCCTCTATGCACCCTCTGCACCTGGGGACTGTCACTGCCACAGGCA-----CCATCTCCCACATGG-ATCCTCTGAGAAAGGAA---GCTCTAAACTTGTGTTCCTGTTCCATTCAACGTCCCTTACAACATCAGTATTGGAGGACATCCTATTAAGATTCTCCAGCTGAAATTATG------TTGAT--GGACATCAACATTAAAAGCAGGAATTTGGAGAAATTAACATGTGATTTTC
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2935629 451 -   3067355 -AACCTCCCCTT--------------------CCCGTAACCTGCATGTGAGCTGTGCTTGCTCCTGCCT-GTCCACTCACCCCTGGAAATGCAGCTCCACCCCAGGGCTGCTGCTTAG-T-GGGGCTG-CAG-GACCTTCCTGTCCA-GTTCCT-AA-------------CAGGGCTTCCACCCAGGCCACTGCCATTGCTGCCCACAGGGGATCTTCTCCTTCTCCTTGTGGAGTAG-GGGGTTTATTCAGACCCCTCAGCCTGAGGCTGCCTCTGTGCACCCTCTGCACCTGGGGATTGCCACTGCCACAGGCA-----CCATCTCCCACATGG-ATCCTCTGAGAAAGGAA---GCTCTAAACTTGTGTTCCTGTTCCATTCAACGTCCCTTACAACATCAGTACTGGAGGACATCCTATTAAGATTATCCAGCTGAAATTATG------TTGAT--GGACATCAACATTTAAAGCAGGAATTTTGAGAAATTAACATGTGATTTTC
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364               117440 466 +    187130 -GGCCTAGCCTG-ACC----------CCCAGGCCCATGACCTGCACTTGGGCTGTGTTTGCTTCAGCCTGGTCCACTCACCCTTGGAAGCAC-------CC--AGGACTGCTACTTGG-T-GAGGTTG-AAA-GGTCTTCCTCTCCC-ATTCTT-AGCACAGATTCCTTGCAGGGGTTCCACCCAAGTTGCTTCTCTCACAGCCCATAGA---TCTTCTTCTTCTCCCTGTGGAGTAG-AAAGTTTCTTGAGACCCCTCAGCCTGAGGCTTCTTCTGCCCACCCTCTGCACTCGGGGATTGCCACTGCCACAGCCA-----CCATCTCCCCTATGG-ACCCTCCTGGAGCGGGA---GCTCCAAGTGTGAGTTCCTGTGTCATTTAATCTGCTTTACAATGTTAGTATTGGTGGAAATCCTTTTAAGA---CCCAGCTGATATAATGAACATCTTTAT-CGGACATCAACATTTAAATCAGAAATTTTGAGAAATTACCATGTAATTTTC
i saiBol1.JH378364             C 0 C 0
s cebCap1.NW_016107755v1         430397 478 -   1771730 -GGCCTAGCCTA-ACC----------CCCAGGCCCATGACCTACACTTGGGCCATCCTTGCTCCAGCCTGGTCCACTCACTTCAGGAAGCACAGCTCCACCGGAGGGCTGCCACTTGG-T-GAGGCCG-AAA-GACCTTCCTCTTCC-GTTCCT-AGCAGAGATTCCTACCAGGTATTCCACCCAAGCTGCTGATCTCACAGCCCATAGGGGTCCCTCTTCTTCTCCCTACAGAGTAG-AAAGTTTCTTGAGATCCCTCAGCCGGAGGCTACCTCTGCCCACTCTCTGCACTCGGGGGTTGCCACTGCCACAGCCA-----CCATCTCCCCTATAG-ACCCTCCTGGAGAGGGA---GCTCCAAGTGTGAGTTCCTGTTTCATTCAATCTGCTTTACAACATTAATATTGGTGGGAATCCTTTTAAGA---CCCAGCTGAAATTATGAACATCTTGAT-TGGACATCAACATTTAGAGCAGTAATTTGGAGAAATTAGAACATAACTTTC
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1         112945 474 -    383796 -AGCCTAGCCTG-ACC----------CCCAGGCCCATGACCTGCACTTGGGCCATGCTTCCTCCAGCCTGGTCCACTCACTTCGGGAAGCACAGCTCCACCCCAGGGCTGCTGCTTGG-T-GAGACCG-AAA-GACCTTCCTCTTCC-GTTCCT-AGCAGGGATTCCTAGCAGGGGTTCCACCCAAGCCACTGACCTCACAGCCCATAGG---GGATCTTCTTCTCCCTGTGAAGTAG-AGAGTTTCTTGAGACCTCTCAGCctgcagctgcctctgcccaccctctgcactcagggattgccactgccacagcca-----cCATCTCCCCTATGA-ACCCTCCTGGAGAGGAA---GCTCCAAGTGTGAGTTCCTGTTTCACTTAATCTGCTTTACGACATTAGTATTGGTGGAAATCCTTTTAAGA---CGCAGCTGAAATTATGAACATCTTGAT-TGGACATCAACATTTAG-GCAGGAATTTTGAGAAATTAGCATATAACTTTC
i aotNan1.NW_018496904v1       C 0 C 0
s otoGar3.GL873550             17178679 452 -  18854210 -GGCCTCCACTG-ACCCTCTGCCCTGCCCAGACTTGAGACTTGCACTTGGGTCGT-CCTGCTCCTGCCTGCTCCACTCAGCCCTGGAAACACAGCTCCACCTCACGGCTCCTGCTTGG-TGGAGGCTG-CCCTGGCCTTCCTGCCCCTGCTCCT-GG-------------CTGGG-TTCCACCCAGACCTCTGCTTT---------CAGGGGATCTTCCTCT---CCATATGGGGTAG-GGGGGCTCTTGAGACCACAAAGCCAGAAGCTGCATCTGCCCGCCCTCTGTAGCC-------TCCACTGTAAAATTTT-----CCAGCCCCTACACAG-CCTCTCCTAGAAAGGGG---GCCCCACATTTAAATTTCCTTCTAATTAAGTCTCACT---AAGGTCAGCATTGCAGGATATTCTGTAAAAAGTAGTCAAGTAAAAATAAG-ACTCCTTTAT--TCATTTCAAAAGCCAAAACAGCAATT--Gagaaatgag-atacaaatttc
i otoGar3.GL873550             N 0 N 0
s canFam3.chr12                71530336 470 -  72498081 GTCCTTGCCCTCCACCCTCACCCTGACCCAGGCGGCCAGGCTGCACTTGGCCTTCGG-TGCTCCTTCTTGGCCCACCTGCACCTGGAATCACAGCTCCTCCCCAAG--TGCAGCTTGGCT-GAGGCTGCCAG-GGCCTTCTGGCCCC-AATCCT-AG-------------CAGGGA--CTAACCAGGC-AATGCAAGGAGAACCTGTTGCAG-TCTTCTTCT-----AAATGAGGTAGAGGGGGTTCTTGAGACCCC-AAGCCTGAGGCTA--TCTGTCCATCTTCTGAACCCTGAGACTGCCATTGCCACCACCTCTCTCCCACCTCCCACATGGAACCCTCCCAGACAAGAGCCCTCCCTCTGGTTGAATTCCTGATATATTTCACGCACTAAGCTAGCTCAGGATCTGAAGAAATCCTATTAAAATTCGTTTTCTGAAATAAT-------TTGTTTTGGACATCACAATTTAAAGCAGGAATTT-GAGAAATTGACACATGACTTTT
i canFam3.chr12                C 0 C 0
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=839050.000000
s hg38.chr6_GL000254v2_alt      1076266 145 +   4827813 ATGCC-TTTTTCTGGCCAATGTCCCAGTGACCTACGAGAAAACCTTTCCTGCCTACAGGGAACCAGAACTGACAATCCCTCTATAGGAGACACCGCAGGTGAGAGCAGGAGCAACCACAGACCTGCACTGC-CCGTGCTGTGGTTGC
s panTro5.chr6                 30041928 146 + 175400573 ATGCCCTTTTTCTGGCCAATGTCCCAGTGACCTACGAGAAAACCATTCCTGCCTACAGGGAACCAGAACTGACAATCCCTCTATAGGAGACACTGCAGGTGAAAGCAGGAGCAACCACAGACCTGCACTGC-CCGTGCTGTGGTTGC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30272569 146 + 173848474 ATGCCCTTTTTCTGGCCAATGTCCCAGTGACCTACGAGAAAACCATTCCTGCCTACAGGGAACCAGAACTGACAATCCCTCTATAGGAGACACTGCAGGTGAGAGCAGGAGCAACCACAGACCTGCACTGC-CCGTGCTGTGGTTGC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6081020 146 +   6154872 ATGCCCTTTTTCTGGCCAATGTCCCAGTGACCTACGAGAAAACCATTCCTGCCTACAGGGAACCAGAACTGACAATCCCTCTATAGGAGACACCGCAGGTGAGAGCAGGAGCAACCACAGACCTGCACTGC-CCATGCTGTGGTTGC
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30515744 146 + 172585720 ATACCCTTTTTCGGGCCAATATTCCGGTGACCTGTGAGAAAACCATTCCTGCCTACAGGGAAGCAAAATTGACAGTCGCTCTACAGGAGACACCACAGGTGAGAGCAGGAGGGACCACAGACCTGCACTGC-CTCTGCTGTGAGTGC
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   135459 146 +    231697 ATACCCTTTTTCTGGCCAATATTCCGGTGACCTGTGAGAAAACCATTCCTGCCTACAGGGAAGCAAAATTGACAGTCGCTCTACAGGAGACACCGCAGGTGAGAGCAGGAGGGACCACAGACCTGCACTGC-CTCTGCTGTGAGTGC
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         723608 136 +    766320 ATGTCCTTTTTCTGGCCATTGTCCCAGTG----------AAACCATTCCTGCCTACAGGGAACCAGACCTGACAATCCCTCTACAGGAGATGCCACAGGTGAGAGCAGGAGCGACCACAGACCTGCACTGC-CCATGCTGTAGGTGC
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29211488 134 -  71996105 ATGCCCTTTTTCTGGCCATTGTCCCAGTG----------AAACCATTCCTGCCTACAGGGAACCAGAACTG--AATCCGTCTATGGGAGATGCCACAGGTGAGAGCAGGAGTGACCAGAGACCTGCACTGC-CCGTCCTGTAGGTGC
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          19521 136 +    273075 ATGCCCTTTTTCTGGCCATTGTCCCAGTG----------AAACCATTCCTGCCTACAGGGAACCAGAACTGACAGTCCCTCTACGGGAGATGCCACAGGTGAGAGCAGGAGCGACCACAGACCTGCACTGC-CCGTCCTGTAGGTGT
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2936080 134 -   3067355 ATGCCCTTTTTCTGGCCATTGTCCCAGTG----------AAACCATTCCTGCCTGCAGGGAACCAGAACTG--AATCCCTCTATGGGAGATGCCACAGGTGAGAGCAGGAGCGACCACAGACCTGCACTGC-CCGTGCTGTAGGTGC
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364               117906 146 +    187130 ATATCCTTTTCCTGACCAATGCCCCAGTGATCTACAAAAAACCCATTCCTGCCGACAGGGAACCAGAACTGACAGTCTTTCCACAGGAGACTCCGCAGGTGAGGGCAGGAGAGACCACAGACCTGCACTGC-CCCTGCTGTGGATGT
i saiBol1.JH378364             C 0 I 35681
s cebCap1.NW_016107755v1         430875 145 -   1771730 ATATCATTTTCTTGGTCAATGCCCCGGTGACTTACAAGGCA-CCGTTCCTGCCCACAGGGAACCAGCACTGACAGTCCCTCCACAGGAGACTCCGAAGGCGAGAGCAGGAGCCACTACTGACCTGCACTGC-CCCTGCTGTGGGTGC
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1         113419 146 -    383796 ATATCCTTTTCCTGGCCAATGCCCCACTGACCTACAAGGCAACCGTTCCTGCCCACAGGGAATGAACACTGACAATCCCTCCACAGGAGACTCCGCAGGTGAGAGCAGGAGCCACCACAGACCTGCACTGC-CCCTGCTGTGGGTGC
i aotNan1.NW_018496904v1       C 0 C 0
s canFam3.chr12                71530806 146 -  72498081 GTATTCTTTCTCCAGTAAATGCCTCAATGATATATGAGGCAATCATTTCTACCC-TAAGGAATCAAAACTGGTGTTCCCTCTGGGAGGGCCACCCCAGAGAACAACAGGAACATCTGCAGACCTGCATGGCTCTTTGCTCTAGTTGT
i canFam3.chr12                C 0 C 0
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=359616.000000
s hg38.chr6_GL000254v2_alt      1076411 58 +   4827813 CTCCTGGACGGGGCCCTCTTGCTGCAGGGCAGGGGATGAACCGTCCCA-TCTGCCCAGG
s panTro5.chr6                 30042074 58 + 175400573 CTCCTGGACGGGGCCCTCTTGCTGCAGGGCAGGGGATGAACCGTCCCA-TCTGCCCAGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30272715 58 + 173848474 CTCCTGGACGGGGCCCTCTTGCTGCAGGGCAGGGGATGAACCGTCCCA-TCTGCCCAGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6081166 58 +   6154872 CTCCTGGACGGGGCCCTCTTGCTGCAGGGCAGGGGATGAACCGTCCCA-TCTGCCCAGG
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30515890 58 + 172585720 CTCCTGGACGGGGCCTTCTTGCTGCAGGGCAGGGGATGAACCATCCCA-TCTGCTGAGG
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   135605 58 +    231697 CTCCTGGACGGGGCCCTCTTGCTGCAGGGCAGGGGATGAACCATCCCA-TCTGCTGAGG
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         723744 58 +    766320 CCCCTGGACAGGGCCCTCTTGCTGCAGGGCAGGGGATGAACCGTCCCA-TCTGCCCAGG
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29211622 58 -  71996105 CCCCTGGACGGGGCCCTCTTGCTGCAGGGCAGGGGATGAACCATCCCA-TCTGCCCAGG
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          19657 58 +    273075 CCCCTGGACGGGGCCCTCTTGCTGCAGGGCAGGGGATGAACCGTCCCA-TCTGCCCAGG
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2936214 58 -   3067355 CTCCTGGACGGGGCCCTCTTGCTGCAGGGCAGCGGATGAACCATCTCA-TCTGCCCAGG
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364               153733 49 +    187130 ATCCTGGACGGGGCCCTCTTGCTGCAGGGCACGGGATGAACCTTCCCA-T---------
i saiBol1.JH378364             I 35681 C 0
s cebCap1.NW_016107755v1         431020 49 -   1771730 CTCCTGGACGGTGCCCTCCTGCTGCAGGGCACGGGATGAACCATTCCA-T---------
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1         113565 49 -    383796 CTCCTGGATGGTGCTCTATTTCTGCAGGGCACGGGATGAACCATCCCA-T---------
i aotNan1.NW_018496904v1       C 0 C 0
s canFam3.chr12                71530952 58 -  72498081 GACCTGGTCTCAGCCC-CTCAGTGTGGGGCAGGGGACTAATCATCCCAGTCTGCCTAAG
i canFam3.chr12                C 0 I 144
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=33638.000000
s hg38.chr6_GL000254v2_alt      1076469 20 +   4827813 CCTGAG------------------------------------------TGGCCAACTAACTG
s panTro5.chr6                 30042132 20 + 175400573 CCTGAG------------------------------------------TGGCCAACTAACTG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30272773 20 + 173848474 CCTGAG------------------------------------------TGGCCAACTAACTG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6081224 20 +   6154872 CCTGAG------------------------------------------TGGCCAACTAACTG
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30515948  6 + 172585720 CCTG--------------------------------------------------------AG
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   135663  6 +    231697 CCTG--------------------------------------------------------AG
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         723802 20 +    766320 CCTGAG------------------------------------------GCGCCAACTGACAG
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29211680 20 -  71996105 CCTGAG------------------------------------------GTGCCGACTGACAG
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          19715 20 +    273075 CCTGAG------------------------------------------GCGCCAACTGACAG
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2936272 20 -   3067355 CCTGAG------------------------------------------GCTCCGGCTGACAG
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364               153782 19 +    187130 -CAGAG------------------------------------------GGGCCGACTGACAG
i saiBol1.JH378364             C 0 T 35749
s cebCap1.NW_016107755v1         431069 19 -   1771730 -TGGAG------------------------------------------GGGCCGACTGACTG
i cebCap1.NW_016107755v1       C 0 C 0
s aotNan1.NW_018496904v1         113614 19 -    383796 -TGGAG------------------------------------------GGGCTGACTGACAG
i aotNan1.NW_018496904v1       C 0 C 0
s canFam3.chr12                71531154 62 -  72498081 cctgagccaaaggcagatgctcaaccaccgagccacccaggcgccTAAAGGCCAGCTTATAA
i canFam3.chr12                I 144 C 0
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=1119013.000000
s hg38.chr6_GL000254v2_alt      1076489 191 +   4827813 TGCA-ATTAGGTTCAAGGATGAGTCA-CCA-----CCACCTCACTGGCCAGACACACGGAAGTGG-AGAAATGGCAGAAAGACTCGGGTTTCCTGGACACCCCAGACTCTCACTGTCCCCTGCACTGCCTCTGTCTTTGCAGAAACTCAAAACTTTCTGCTTGCTCTTTTCCTCTCCCCTCAAACAACCTGACT-------------------------------------GTGGG
s panTro5.chr6                 30042152 191 + 175400573 TGCA-ATTAGGTTCAAGGATGAGTCA-CCA-----CCACCTCACTGGCCAGACACACGGAAGTGG-AGAAATGGCAGAAACACTTGGGTTTCCTGGACACCCCAGACTCTCACTGTCCCCTGCACTGCCTCTGTCTTTGCAGAAACTCAAAACTTTCTGCTTGCTCTTTTCCTCTCCCCTCAAACAACCTGACT-------------------------------------ATGGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30272793 191 + 173848474 TGCA-ATTAGGTTCAAGGGTGAGTCA-CCA-----CCACCTCACTGGCCAGACACACGGAAGTGG-AGAAATGGCAGAAACACTTGGGTTTCCTGGACACCCCAGACTCTCACTGTCCCCTGCACTGCCTCTGTCTTTGCAGAAACTCAAAACTTTCTGCTTGCTCTTTTCCTCTCCCCTCAAACAACCTGACT-------------------------------------GTGGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6081244 191 +   6154872 TGCA-ATTAGGTTCAAGGATGAGTCA-CCA-----CCACCTCACTGGCCAGACACACGGAAGTGG-AGAAATGGCAGAAAGACTCGGGTTTCCTGGACACCCCAGACTCTCATTGTCCCCTGCACTGCCTCTGTCTTTGCAGAAACTCAAAACTTTCTGCTTGCTCTTTTCCTCTCCCCTCAAACAACCTGACT-------------------------------------GTGGG
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30515954 186 + 172585720 TGCA-ATTAGGTTCAAGGATGAGTCG-CCA-----CTACCCCACTGGCCAGACACACAGAAGTGG-GGAAATGGCAGAAAGACTCGGGTTTCCTGGACACCCCAGCCTCTCACTGTCCCCTGCACTGCCTCTGTCTTTACAAAAACACAAAACTTTCTGCT-----TTCTCCTCTCCCCTCAAACAACTTGACT-------------------------------------GTGGG
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   135669 186 +    231697 TGCA-ATTAGGTTCAAGGATGAGTCG-CCA-----CTACCCCACTGGCCAGACACACAGGAGTGG-GGAAATGGCAGAAAGACTCGGGTCTCCTGGACACCCCAGCCTCTCACTGTCCCCTGCGCTGCCTCTGTCTTTACAAAAACACAAAACTTTCTGCT-----TTCTCCTCTCCCCTCAAACAACTTGACT-------------------------------------GTGGG
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         723822 191 +    766320 TGCC-ATTAGGTTCAAGGATGAGTCA-CCA-----CCACCTCACTGACCAGACACACGGAAGTGC-GGAAATGGCAGAAACACTTAGGTCTCCGGGACACCCCAGACCCTCACTGTGCCCTGCACTGTCTCTGTCTTTGCAGAAACTGAAAACTTTCTGCTTGCTCTTTTCCTCTCCCCTCAAACAACCTGGCT-------------------------------------GTGGG
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29211700 191 -  71996105 TGCC-ATTAGGTTCAAGGATGAGTCA-CCA-----CCATCTCACTGACCAGACACACAGAAGTGT-GGAAATGGCAGAAACACTTAGGTCTCCTGGACACCCCAGACTCTCATTGTGCCCTGCACTGTCTCTGTCTTTGCACAAACTGAAAACTTTCTGCTTGCTCTTTTCCTCTCCCCTCAAACAACCTGGCT-------------------------------------GTGGG
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          19735 191 +    273075 TGCC-GTTAGGTTCAAGGATGAGTCA-CCA-----CCACCTCACTGACCAGACACACGGAAGTGC-GGAAATGGCAGAAACACTTAGGTCTCCGGGAGACCCCAGACTCTCACTGTGCCCTGCACTGTCTCTGTCTTTGCAGAAACTGAAAACTTTCTGCTTGCTCTTTTCCTCTCCCCTCAAACAACCTGGCT-------------------------------------GTGGG
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2936292 184 -   3067355 TGCC-ATT-------AGGATGAGTCA-CCA-----CCACCTCACTGACCAGACACACAGAAGTGG-GGAAATGGCAGAAAGACTTGGGTCTCCCAGACACCCCAGACTCTCATTGTGCCCTGCACTGTCTCTGTCTTTGCAGAAACTGAAAACTTTCTGCTTGCCCTTTTCCTCTCCCCTCAAACAACCTGGCT-------------------------------------GTGGG
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364               118052 187 +    187130 AGCA-AT--AGTTCAAGGATGAGATA-CCA------CCACCCCCTTGCCAGGCACACAGAAGTGG-GGAAATGACAGAACGATGTGGGTCTCCTGGACACTGCAGCTTCTCAGTGTCTCCTGCACTGTCTCTGTCTTTGCAGAAACACCAAACTTCCCGCTTGCTCTTTTCCTCTGCCCTCAGAAAACCTAACT-------------------------------------GTGT-
i saiBol1.JH378364             T 35749 C 0
s cebCap1.NW_016107755v1         431088 195 -   1771730 TGCA-ATTAAGCTCAAGGATGAGAAA-CCACACCCCCCCCCCACCCGCCAGACACACAGAAGT-G-GGAAATGGCAGAAAGTCTCGGGTTTCCTGTACACTCCATCCTCTCATAGTCTCCTGCAGTGTCTCTGTCTTTGCAGAAGCACAAAACTTCCTACCTGCTCTTTCCCTCTCCCCTCAAGCAACCTGACT-------------------------------------GTGGG
i cebCap1.NW_016107755v1       C 0 T 43575
s aotNan1.NW_018496904v1         113633 191 -    383796 TGCA-ATTAAGTTCAAGGATGAGAAA-CCA-----CCCCCCCCACTACTAGACACACAGAAATGG-GGAAATGGCAGAAAGACTCGGGGTTCCTGGACACTCCATCCTCTCAGAGTCTCCTGCACTGTCTCTGTCTTTGCAGAAGCACAAAACTTCCTACTTGCTCTTTCCCTCTCCCCTCCAACAACCTGACT-------------------------------------GTGGG
i aotNan1.NW_018496904v1       C 0 C 0
s canFam3.chr12                71531216 228 -  72498081 -GTAGATTAGGTTCCAGAGTGAGAAATCCG-----ATGCCTGCCATGATGGTCACCCAGCAGTGGTAGAATCAACTGAAGGACCCCAGGCCCC-ACACACCCCATTCTTTCCCTGTCCCATGCATCACCTTGTTTTTTGCCCAAACACAAAACTCCAT-CTTTCTGTTTTCACCTCCCCTCAACCAGCCTGATTACACAGAAATCttttttttaatttaatttttattcaagtggg
i canFam3.chr12                C 0 I 118
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=7800.000000
s hg38.chr6_GL000254v2_alt      1076680 1 +   4827813 G
s panTro5.chr6                 30042343 1 + 175400573 G
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30272984 1 + 173848474 G
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6081435 1 +   6154872 G
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30516140 1 + 172585720 G
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   135855 1 +    231697 G
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         724013 1 +    766320 G
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29211891 1 -  71996105 G
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          19926 1 +    273075 G
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2936476 1 -   3067355 G
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364               118239 1 +    187130 G
i saiBol1.JH378364             C 0 C 0
s aotNan1.NW_018496904v1         113824 1 -    383796 G
i aotNan1.NW_018496904v1       C 0 I 21032
s canFam3.chr12                71531562 1 -  72498081 G
i canFam3.chr12                I 118 C 0
e cebCap1.NW_016107755v1         431283 43575 -   1771730 T
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=273181.000000
s hg38.chr6_GL000254v2_alt      1076681 67 +   4827813 GAAATGATTCTGACTGTCTCTTATTGTAAACTTACCAGGCAGCGACTACACTAAGAACAAAAACATT
s panTro5.chr6                 30042344 67 + 175400573 GAAATGATTCTGACTGTCTCTTATTTTAAACTTACCAGGCAGTGACTACACTAAGAACAAAAAAATT
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30272985 67 + 173848474 GAAATGATTCTGACTGTCTCTTATTTTAAACTTACCAGGCAGTGACTACACTAAGAACAAAAAAATT
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6081436 67 +   6154872 GAAATGATTCTGACTGTCTCTTATTTTAAACTTACCAGGCAATGACTACGCTAAGAACAAAAAAATT
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30516141 67 + 172585720 AAAACAATTCTGACTGTCTCTTGTTTTAAACTTGCCAGGCAATGAAGATGTTAAGAAGAAAAACATT
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   135856 67 +    231697 AAAACAATTCTGACTGTCTCTTGTTTTAAACTTGCCAGGCAATGAAGATGTTAAGAAGAAAAACATT
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         724014 67 +    766320 GAAATGATTCTGACTGTCTCTTATTTTAAACTTACCAGGCCATGACTATGTTAAGAAGAAAAAAATT
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29211892 67 -  71996105 GAAATGATTCTGACTGTCTCTTATTTTAAACTTACCAGGCCATGACTATGTTAAGAAGAAAAAAATT
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          19927 67 +    273075 GAAATGATTCTGACTGTCTCTTATTTTAAACTTACCAGGCCATGACTATGTTAAGAAGAAAAAAATT
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2936477 67 -   3067355 GAAATGATTCTGACTGTCTCTTATTTTAAACTTACCAGGCCATGACTATGTTAAGAAGAAAAAAATT
i colAng1.NW_012115566v1       C 0 C 0
s saiBol1.JH378364               118240 64 +    187130 GAAATCATCCTGAGCATCTCTTACTCCAGACTTCCCAGGCAGGGATtattct---tccaaagacatt
i saiBol1.JH378364             C 0 I 2763
s canFam3.chr12                71531563 65 -  72498081 GTAATCATTCTGACCATCCCTTCCTCCAAATCTACAGGGCAGTGAGCAGCACAAGAAAGGGAACC--
i canFam3.chr12                C 0 C 0
e aotNan1.NW_018496904v1         113825 21032 -    383796 I
e cebCap1.NW_016107755v1         431283 43575 -   1771730 T
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=1484240.000000
s hg38.chr6_GL000254v2_alt      1076748 389 +   4827813 GGCTCAGGAAAGGCAAGGTGAGGCCAC-AGAGCACAGA-ACAAAG--CCCAAA---AAACAGCCCACTGGGTACTATGACCCTCGGGGGCTGGAAAAAGTAACACCTGGACATGGGATGAAAACAGGGACCACAGCTGCCCTGACAGAGGGCTGGTCCCCACTCCCCAAATAGCCCAGGGACATCTGCTTA-----------TCAACTGG-------TCCATATTATCTGCAAGGAAACACAGGGAGACA-GGGGCCATATGGTGGGAACCCAGAAAAAGCACGGTCTCGAGGGACCCAGAGGACGTGACACCCCT--GAGACAGCTCCCAGATGAGGCATATGGGGAGCTGCAAAGTGGACAGAGGATGGCCATGTGCACTCAGGA-----CTCTCCCTGTTA------------CAAGGG-GACCTCAAAGGG----------------------
s panTro5.chr6                 30042411 389 + 175400573 GGCTCAGGAAAGGCAAGGTGAGGCCAC-AGAGCACAGA-ACAAAG--CCCAAA---AAACAGCCCACTGGGTACTATGACTCTCAGGGGCTGGAAAAAGTAACACCTGGACATGGGATGAAAACAGGGACCACAGCTGCCCTGACAGAGGGCTGGTCCCCACTCCCCAAATAGCCCAGGGACATCTGCTTA-----------TCAACTGG-------TCCATATTATCTGCAAGGAAACACAGGGAGACA-GGGGCCATATGGTGGGAACCCAGAAAAAGCATGGTCTCGAGGGACCCAGAGGACATGACACCCCT--GAGACAGCTCCCAGATGAGGCATATGGGGAGCTGCAAAGTGGACAGAGGATGGCCATGTGCACTCAGGA-----CTCTCCCTGTTA------------CAAGGG-GACCTCAAAGGG----------------------
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30273052 389 + 173848474 GGCTCAGGAAAGGCAAGGTGAGGCCAC-AGAGCACAGA-ACAAAG--CCCAAA---AAACAGCCCACTGGGTACTATGACTCTCGGGGGCTGGAAAAAGTAACACCTGGACATGGGATGAAAACAGGGACCACAGCTGCCCTGACAGAGGGCTGGTCCCCACTCCCCAAATAGCCCAGGGACATCTGCTTA-----------TCAACTGG-------TCCATATTATCTGCAAGGAAACACAGGGAGACA-GGGGCCATATGGTGGGAACCCAGAAAAAGCATGGTCTCGAGGGACCCAGAGGACATGACACCCCT--GAGACAGCTCCCAGATGAGGCATATGGGGAGCTGCAAAGTGGACAGAGGATGGCCATGTGCACTCAGGA-----CTCTCCCTGTTA------------CAAGGG-GACCTCAAAGGG----------------------
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6081503 389 +   6154872 GGCTCAGGAAAGGCAAGGTGAGGCCAC-AGAGCACAGA-ACAAAG--CCCAAA---AAACAGCCCACTGGGGACTATGACCCTCGGGGGCTGGAAAAAGTAACACCTGGACATGGGATGAAAACAGGGACCACAGCTGCCCTGACAGAGGGCTGGTCCCCACTCCCCAAATAGCCCAGGGACATCTGCTTA-----------TCACCTGG-------TCCATATTATCTGCAAGGAAACACAGGGAGACA-GGGGCCATATGGTGGGAACCCAGAAAAAGCACGGTCTCGAGGGACCCAGAGGACATGACACCCCT--GAGACAGCTCCCAGATGAGGCATATGGGGAGCTGCAAAGTGGACAGAGGATGGCCATGTGCACTCAGGA-----CTCTCCCTGTTA------------CAAGGG-GACCTCAAAGGG----------------------
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30516208 390 + 172585720 GGCTCAGGAAAGGCAAGGTGAGGCCAC-AAAGCACAGA-ACAAAGCCCCCAAA---ACACAG-TCCCTGGGGATTATGACTCT-GGGGGCTGGAAAAAGTAATACCTGGACATAGGATGAAAACAGGGAAC-CAGCTGCCCTGGCAGGGTGCTGGTTCCCACTCCCCAAATTGCCCAGGGACACCTGCTTA-----------TCTACTCG-------TCCATATCATCTGCAAGGAAACATAGGGCGGCA-GGGGCCACATGGTGAGAACCTGGAAAAAGCACAGCCTTGAGTGACCCAGAGGACACAACACCCCCGAGAGAGAGCTCCCGGATGAGGCGCATGGGCAGCTACAAGGTGGA-AGAGGATGGCCGTGTGCACTCAGGA-----CCCTCCCTGGTA------------CAAGGGAGGCCACAAAGGG----------------------
i rheMac8.chr4                 C 0 I 26
s macFas5.chr4_KE145577_random   135923 390 +    231697 GGCTCAGGAAAGGCAAGGTGAGGCCAC-AAAGCACAGA-ACAAAGCCCCCAAA---ACACAG-TCCCTAGGGATTATGACTCT-GGGGGCTGGAAAAAGTAATACCTGGACATAGGATGAAAACAGGGAAC-CAGCTGCCCTGGCAGGCTGCTGGTTCCCACTCCCCAAATTGCCCAGGGACACCTGCTTA-----------TCTACTCG-------TCCATATCATCTGCAAGGAAACATAGGGCGGCA-GGGGCCACATGGTGAGAACCTGGAAAAAGCACAGCCTTGAGAGACCCAGAGGACACAACACCCCGGAGAGAGAGCTCCCGGATGAGGCGCATGGGCAGCTGCAAGGTGGA-AGAGGATGGCCGTGTGCACTCAGGA-----CCCTCCCTGGTA------------CAAGGGAGGCCACAAAGGG----------------------
i macFas5.chr4_KE145577_random C 0 I 1
s cerAty1.NW_012002711v1         724081 388 +    766320 GGCTCAAAGAGGGCAAGGTGAGGCCAC-AGAGTACAGA-ACAAAG--CCCAAA---AAACAGCCCCCTGGGGACTATGACCCTCGGGGGCTGGAAAATGTAACACCTGGACATAGGATGAAAACAGGGAGCACAGCTGCCCTGACAGGGAGCTGGTCCCCATTCCCCAAATAGCCCAGGGACATCCGCTTA-----------TCACCTTG-------TCCATATTATCTGCAA-GAAACACAGGGAGACA-GGGGCCATATGGTGGGAACCTGGAAAAAGCACGGCCTCGAGGGACCCGGAAGACATGACACCCCT--GAGACAGCTCCCAGATGAGATATATGGGGAGCTGCAAAGTGGACAGAGGATGGCCGTGTGCACTCAGGA-----CCCTCCCTGGTA------------CAAGGG-GACCTCAAAGGG----------------------
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29211959 388 -  71996105 GGCTCAAAGAGGGTAAGGTGAGGCCAC-AGAGTACAGA-ACAAAG--CCCAAA---AAACAGCCCCCTGGGGACTATGACCCTTGGGGGCTGGAAAATGTAACATCTGGACATAAGATGAAAACAGGGACCACAGCTGCCCTGACAGAGAGCTGGTCCCCATTCCCCAAATAGCCCAGGGACATCTGCTTA-----------TCACCTTG-------TCCATATTATTTGCAA-GAAACACAGGGAGACA-GGGGTCATATGGTGGGAACCTGGAAAAAGCACGGCCTCGAGGGACCCGGAAGACATGACACCCCT--GAGACAGCTCCCAGATGAGATATATGGGAAGCTGCAAAGTGGACAGAGGATGGCCGTGTGCACTCAGGA-----CCCTGCCTGGTA------------CAAGGG-GACCTCATAGGG----------------------
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          19994 388 +    273075 GGCTCAAAGAGGGCAAGGTGAGGCCAC-AGAGTACAGA-ACAAAG--CCCAAA---AAACAGCCCCCTGGGGACTATGACCCTCGGGGGCTGGAAAAAGCAACACCTGGACATTAGATGAAAACAGAGACCACAGCTGCCCTGACAGGGAGCTGGTCCCCATTCCCCAAATAGCCCAGGGACATCTGCTTA-----------TCACCTTG-------TCCATATTATCTGCAA-GAAACACAGGGAGAGA-GGGGCCATATGGTGGGAACCTGGAAAAAGCACAGCCTCGAGGGACCCAGAAGACATGACACCCCT--GAGACAGCTCCCAGATGAGATATATGGGGAGCTGCAAAGTGGACAGAGGATGGCCGTATGCACTCAGGA-----CCCTCCCTGGTA------------CAAGGG-GACCTCAAAGGG----------------------
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2936544 386 -   3067355 GGCTCAAAGAGGGCAAGATGAGGCCAC-AGAGCACAGA-ACAAAG--CCCCAA---AAACAGCCCCCTGGGGACTATGACCCTTGGGGGCTGGAAAAAGTAATACCTGGACATAGGATGAAAACAGGGACCAGAGCTGCCCTG--AGGGGGCTGGTCCGCACTCCCCAAATAGCCCAGGGACATCTGCTTA-----------TCACCTCG-------TCCATATCAGCTGCAAGGAAACACAGGGAGACA-GGGGTCACATGGTGGGAACCTGGAAAAAGCACGGCCTCGAGGGACCCGGAAGACATGACACCCT---GAGACAGCTCCCAGATGAGAGATATAGGGAGCTGCAAAGTGGACAGAGGATGACCGTGTACACTCAGGA-----CCCTCCCTGGTA------------CAAGGG-GACCTCAAAGGG----------------------
i colAng1.NW_012115566v1       C 0 C 0
s canFam3.chr12                71531628 446 -  72498081 GGCTCAGGGAGGGCAGAGTGAGGCCACAAGGGTACAGACAGAATG--CCCTGCCCTAAGTAGTTTCTTAG--ACTGTG-CCCTGAGGGCCTGGACAGGACACATCAGGGAGGCAGGATAAAAGCAGTGGCCACAGCAGCCCTGAGAATGGACTGACCCTCTCTACCCAAATGATCAAGGGTTATCTGCTCACACCCCCAGAGTCTCCCTGAGACTCTTGCATATGATCCACAAGAAAACTCCAGGAAGCATGGGGGCATATGATGGGAACCAGGAAAGAGCACAGGTGGGAGTGACCCAGTGGA----ACAACTCGG-GAGACAGGTCCTGGAGGAGCCATTCGAGGGGCTACAAAGTGGACCAAAGGTGACCATCTATGCTCAGGATGCATCTATGCCTTGTGAGTGGAACTTCCCAAGGG-GACGTCACAGGCAGGACTCTGGCATGCTCTCCTG
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364               118304 2763 +    187130 I
e aotNan1.NW_018496904v1         113825 21032 -    383796 I
e cebCap1.NW_016107755v1         431283 43575 -   1771730 T
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=60630.000000
s hg38.chr6_GL000254v2_alt      1077137 21 +   4827813 GCTGTACACATGGGG--------GCCCTC
s panTro5.chr6                 30042800 21 + 175400573 TCTGTACACATGGAG--------GCCCTC
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30273441 21 + 173848474 TCTGTACACATGGAG--------GCCCTC
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6081892 21 +   6154872 GCTGTACACATGGGG--------GCCCTC
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random   136314 21 +    231697 ACTGCACATGCAGGG--------GCCCTC
i macFas5.chr4_KE145577_random I 1 C 0
s cerAty1.NW_012002711v1         724469 21 +    766320 ACTGTACACACAGGG--------GCCCTC
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29212347 21 -  71996105 ACTGTACACACAGGG--------GCCCTC
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          20382 21 +    273075 ACTGTACACACAGGG--------GCCCTC
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2936930 21 -   3067355 ACTGTACACACAGGG--------GCCCTC
i colAng1.NW_012115566v1       C 0 C 0
s canFam3.chr12                71532074 28 -  72498081 GCTGC-CACATGGGGCCTTGTGAGTCCTt
i canFam3.chr12                C 0 I 152
e saiBol1.JH378364               118304 2763 +    187130 I
e aotNan1.NW_018496904v1         113825 21032 -    383796 I
e cebCap1.NW_016107755v1         431283 43575 -   1771730 T
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e rheMac8.chr4                 30516598 26 + 172585720 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=10567.000000
s hg38.chr6_GL000254v2_alt      1077158 6 +   4827813 ATTCTG
s panTro5.chr6                 30042821 6 + 175400573 ATTCTG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30273462 6 + 173848474 ATTCTG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6081913 6 +   6154872 ATTCTG
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random   136335 4 +    231697 CGTC--
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         724490 6 +    766320 AGTCTG
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29212368 6 -  71996105 AGTCTG
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          20403 6 +    273075 AGTCTG
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2936951 6 -   3067355 AGTCTG
i colAng1.NW_012115566v1       C 0 C 0
s canFam3.chr12                71532254 6 -  72498081 atcccg
i canFam3.chr12                I 152 C 0
e saiBol1.JH378364               118304 2763 +    187130 I
e aotNan1.NW_018496904v1         113825 21032 -    383796 I
e cebCap1.NW_016107755v1         431283 43575 -   1771730 T
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e rheMac8.chr4                 30516598 26 + 172585720 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=269747.000000
s hg38.chr6_GL000254v2_alt      1077164  67 +   4827813 GGCCTC------------------------------------------------------------GTGGGTCTTTTTCTTGATGTCCTCCTGATGGCTGGAGAAACAGGGGAGGGGGATGCAGAGA
s panTro5.chr6                 30042827  67 + 175400573 GGCCTC------------------------------------------------------------GTGGGTCTTTTTCTTGATGTCCTCCTGATGGCTGGAGAAACAGGGGAGGGGGATGCAGAGA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30273468  67 + 173848474 GGCCTC------------------------------------------------------------GTGGGTCTTTTTCTTGATGTCCTCCTGATGGCTGGAGAAACAGGGGAGGGGGATGCAGAGA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6081919  67 +   6154872 GGCCTC------------------------------------------------------------GTGGGTCTTTTTCTTGATGTCCTCCTGATGGCTGGAGAAACAGGGGAGGGGGATGCAGAGA
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30516624  67 + 172585720 AGCCTC------------------------------------------------------------GTGGGTCTTTTTCTTGGCGTCCTTCTGATGGCTGGAGAAACAGGGGGGAGTGATGCAGGGA
i rheMac8.chr4                 I 26 C 0
s macFas5.chr4_KE145577_random   136339  67 +    231697 AGCCTC------------------------------------------------------------GTGGGTCTTTTTCTTGGCGTCCTTCTGATGGCTGGAGAAACAGGGGGGAGTGATGCAGGGA
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         724496  67 +    766320 GGCCTC------------------------------------------------------------GTGGGTCTTTTTCTTGGTGTCCTCCTGATGGCTGGAGAAACAGGGGAGGGGGATGCAGAGA
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29212374  67 -  71996105 GGCCTC------------------------------------------------------------GTGGGTCTTTTTCTTGGTGTCCTCCTGATGGCTGGAGAAACAGGGGAGGGGGATGCAGAGA
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          20409  67 +    273075 GGCCTC------------------------------------------------------------GTGGGTCTTTTTCTTGGTGTCCCCCTGATGGCTGGAGAAACACGGGAGGGGGATGCAGAGA
i manLeu1.NW_012101121v1       C 0 C 0
s colAng1.NW_012115566v1        2936957  67 -   3067355 GGCCTC------------------------------------------------------------GTGGGTCTTTTTCTTGGTGTCCTCCTGATGGCTGGAGAAACAGGGGAGGGGGATGCAGAGA
i colAng1.NW_012115566v1       C 0 M 1465
s canFam3.chr12                71532260 124 -  72498081 ggtctccaggatcgcgccctgggccaaaggcaggctccaaaccgctgcgccacccagggatcccCTGTGAGTCCTTTTCTTTGATTCCTCATGATGGCCGAAGATATTGGAACAGG---TGTGGACA
i canFam3.chr12                C 0 C 0
e saiBol1.JH378364               118304 2763 +    187130 I
e aotNan1.NW_018496904v1         113825 21032 -    383796 I
e cebCap1.NW_016107755v1         431283 43575 -   1771730 T
e calJac3.chr4                 30147357 50966 + 171630274 I
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=826506.000000
s hg38.chr6_GL000254v2_alt      1077231 282 +   4827813 GGAAGGGACTAGAGGCACCACCTCTCCT-TGGATTCCTCTCCAGTTTCTAGC--CC-TCCCTAGATCACATCTGCCTTTACTATTTGCTCC-CTCTGAGATAGTGATCATCCAGGCCCTCAGCAATCAGCACGCAATTCCCAACTCACCCACCTGGAT---GCGACCTGGTAAGCCTGAGAG---ACAGAGACCGGGATGGGGACAAAGCAGGCACCACGGCCCTCCCTGCTGCCCACTCCTCACCTGCAGCAGGAGGAGGCCACAGCTGGATGTTCGAGGGCCTTGG---CCCAG
s panTro5.chr6                 30042894 282 + 175400573 GGAAGGGACTAGAGGCACCACCTCTCCT-TGGATTCCTCTCCAGTTTCTAGC--CC-TCCCTAGATCACATCTGCCTTTACTATTTGCTCC-CTCTGAGATAGTGATCATCCAGGCCCTCAGCAATCAGCACGCAATTCCCAACTCACCCACCTGGAT---GCAACCTGGTAAGCCTGAGAG---ACAGAGACCGGGATGGGGACAAAGCAGGCACCACGGCCCTCCCTGCTGCCCACTCCTCACCTGCAGCAGGAGGAGGCCACAGCTGGATGTTCAAGGGCCTTGG---CCCAG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30273535 282 + 173848474 GGAAGGGACTAGAGGCACCACCTCTCCT-TGGATTCCTCTCCAGTTTCTAGC--CC-TCCCTAGATCACATCTGCCTTTACTATTTGCTCC-CTCTGAGATAGTGATCATCCAGGCCCTCAGCAATCAGCACGCAATTCCCAACTCACCCACCTGGAT---GCAACCTGGTAAGCCTGAGAG---ACAGAGACCGGGATGGGGACAAAGCAGGCACCACGGCCCTCCCTGCTGCCCACTCCTCACCTGCAGCAGGAGGAGGCCACAGCTGGATGTTCAAGGGCCTTGG---CCCAG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6081986 281 +   6154872 GGAAGGGACTAGAGGCACCACCTCTTCT-TGGATTCCTCTCCAGTTTCTAGC--CC-TCCCTAGATCACATCTGCCTTTACTATTTTCTCC-CTCTGCGATAGTGATCATCCAGGCCCTCAGCAGTCAGCACGCAATTCCCAACTCACCCACCTGGAT---GCGACCTGGTAAGCCTGAGAG---ACAGAGACCGGGATGGGGACAAAGCAGGCACCACGGCCCTCCCTGCTGCCC-TTCCTCACCTGCAGCAGGAGGAGGCCACAGCTGGATGTTCGAGGGCCTTGG---CCCAG
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30516691 262 + 172585720 GGAAGGGACTAGAGGCTCTGCCTCTCCT-CGGATTCCTTTCTAGTTTCTAAC--CTGTCACCAGATCACATCTGTCTTTACTATTGGCTCC-CTCTGAGTCCATGATCATTCAGGCTCTCAGCAATCAGCATGCAATTCCCAACTCATCCACCTAGAT---GCACCCTGGTAAGCCTGAGAG---AC--AGACTGGGATGGGGACAGAGCAGGTGCCAG-------------------TCCTCACCTGCAGCAGGAGGAGGCCACAGCTGGACGTTCAAGGTCCTTGG---CCCAG
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   136406 262 +    231697 GGAAGGGACTAGAGGCTCTGCCTCTCCT-CGGATTCCTTTCTAGTTTCTAAC--CTGTCACCAGATCACATCTGTCTTTACTATTGGCTCC-CTCTGAGTCCATGATCATTCAGGCTCTCAGCAATCAGCATGCAATTCCCAACTCATCCACCTAGAT---GCACCCTGGTAAGCCTGAGAG---AC--AGACTGGGATGGGGACAGAGCAGGTGCCAG-------------------TCCTCACCTGCAGCAGGAGGAGGCCACAGCTGGACGTTCAAGGTCCTTGG---CCCAG
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         724563 269 +    766320 GGAAGGGACTAGAGGCACCACCTCTCCT-TGGATTCCTCTCCAGTTTCTAGC--CC-TCCCCAGATCACAGCT-------------GCTCC-CTCTGAGATAGTGATCATCCAGGCCCTCAGCAATCAGCACGCAATTCCCAACTCACCCACCTGGAT---GTGCCCTGGTCAGCCTGagag---acagagaccgggatggagacagagcagGCACCATGGCCCTCCCTGCAGCCCACTCCTCATCTGCAGCAGGAGGAGGCCACAGCTGGACATTTGAGGGCCTTGG---CCCAG
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29212441 269 -  71996105 GGAAGGGACTAGAGGCACCACCTCTCCT-TGGATTCCTCTCCAGGTTCTAGC--CC-TCCCCAGATCACAGCT-------------GCTCC-CTCTGAGATAGTGATCATCCAGGCCCTCAGCAATCAGCACGCAATTCCCAACTCACCCACCTGGAT---GTGCCCTGGTCAGCCTGAGAG---ACAGAGACCGGGATGGGGACAGAGCAGGCACCATGGCCCTCCCTGCAGCCCACTCCTCATCTGCAGCAGGAGGAGGCCACAGCTGGACGTTTGAGGGCCTTGG---CCCAG
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          20476 267 +    273075 GGAAGGGACTAGAGGCACCACCTCTCCT-TGGATTCCTCTCCAGTTTCTAGC--CC-TCCCCAGATCACAGCT-------------GCTCC-CTCTGAGATAGTGATCATCCAGGCCCTCAGCAATCAGCACGCAATTCCCAACTCACCCACCTGGAT---GTGCCCTGGTCAGCCTGAGAG-----AGAGACCGGGATGGGGACAGAGCAGGCACCATGGCCCTCCCTGCAGCCCACTCCTCATCTGCAGCAGGAGGAGGCCACAGCTGGACGTTTGAGGGCCTTGG---CCCAG
i manLeu1.NW_012101121v1       C 0 C 0
s canFam3.chr12                71532384 291 -  72498081 GGAAGGAAATAGAATCATTACTTCTGGTCTGGATTCTTGCCCAGTGTTAAACTTCC-CCACTAGGTCTTGGAC-CCTTTACTGCTTGTGCCTCTCTGGTCCCACGATCACCTGGGCCCTCCCCAGTCAACACATGGTCCCCACACATTACCTCCAGACAGAGAGTCCTGCCGAGCCTGAGAGTAGAGAGAGGTAGGGACAAACTCAGAGCAGGGAGCCC--CAGTCCCTACTGCCCAATCCTCACCCAGAGCAAGGAGAGGCCACA-CTCACCACTCAAGGGCCCTGGGGACCCAG
i canFam3.chr12                C 0 n 0
e saiBol1.JH378364               118304 2763 +    187130 I
e aotNan1.NW_018496904v1         113825 21032 -    383796 I
e cebCap1.NW_016107755v1         431283 43575 -   1771730 T
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2937024 1465 -   3067355 M
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=78750.000000
s hg38.chr6_GL000254v2_alt      1077513 24 +   4827813 CCCTGGCTTGGGCAGGACTTAAGG
s panTro5.chr6                 30043176 24 + 175400573 CCCTGGCTTGGGCAGGACTTAAGG
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30273817 24 + 173848474 CCCTGGCTTGGGCAGGACTTAAGG
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6082267 24 +   6154872 CCCTGGCTTGGGCAGGACTTAAGG
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30516953 24 + 172585720 CCTTGGCTTGGGCAGAACTTAAGG
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   136668 24 +    231697 CCTTGGCTTGGGCAGAACTTAAGG
i macFas5.chr4_KE145577_random C 0 C 0
s cerAty1.NW_012002711v1         724832 24 +    766320 CCCTGGCTTGGGCAGGACTTAAGG
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29212710 24 -  71996105 CCCTGGCTTGGGCAGGACTTAAGG
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          20743 24 +    273075 CCCTGGCTTGGGCAGGACTTAAGA
i manLeu1.NW_012101121v1       C 0 C 0
e canFam3.chr12                71532675  0 -  72498081 I
e saiBol1.JH378364               118304 2763 +    187130 I
e aotNan1.NW_018496904v1         113825 21032 -    383796 I
e cebCap1.NW_016107755v1         431283 43575 -   1771730 T
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2937024 1465 -   3067355 M
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74742315 7847 + 122973662 I

a score=228370.000000
s hg38.chr6_GL000254v2_alt      1077537 64 +   4827813 GTGTAAAAAATAACCTACATGTGATGGTTCATTTTCAATTCTATGTGCCTTAGTATAGGTTTAA
s panTro5.chr6                 30043200 64 + 175400573 GTGTAAAAAATAACCTACATGTGATGGTTCATTTTCAATTCTATGTGCCTTAGTATAGGTTTAA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30273841 64 + 173848474 GTGTAAAAAATAACCTACATGTGATGGTTCATTTTCAATTCTATGTGCCTTAGTATAGGTTTAA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6082291 64 +   6154872 GTGTAAAAAATAACCTACATGTGATGGTTCATTTTCAATTCTATGTGCCTTAGTATAGGTTTAA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74750162 60 + 122973662 GCGTAAAAAATAACCTACATGTGATAGTTCATTTTCA----TAAGTGCCTTAGAATATGTTTAA
i nomLeu3.chr1a                I 7847 C 0
s rheMac8.chr4                 30516977 64 + 172585720 GCGTCAAAAATAAGCTACACATGATGGTTCATTTTCAATTCTATGTTCCTCAGTATAGGTTCAA
i rheMac8.chr4                 C 0 I 13
s macFas5.chr4_KE145577_random   136692 64 +    231697 ACGTCAAAAATAAGCTACACATGATGGTTCATTTTCAATTCTATGTTCCTCAGTATAGGTTCAA
i macFas5.chr4_KE145577_random C 0 I 5
s cerAty1.NW_012002711v1         724856 64 +    766320 GTATAAAAAATAACCTACATGTGATGGTTCATTTTCAATTCTACGTGCCTTAGTATAGGTTTAA
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29212734 64 -  71996105 GTATAAAAAATAACCTACATGTGATGGTTCATTTTCAATTCTATGTGCCTTAGTATAGGTTTAA
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          20767 64 +    273075 GTATAAAAAATAACCTACATGTGATGGTTCATTTTCAATTCTACGTGCCTTAGTATAGGTTTAA
i manLeu1.NW_012101121v1       C 0 C 0
e canFam3.chr12                71532675  0 -  72498081 I
e saiBol1.JH378364               118304 2763 +    187130 I
e aotNan1.NW_018496904v1         113825 21032 -    383796 I
e cebCap1.NW_016107755v1         431283 43575 -   1771730 T
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2937024 1465 -   3067355 M
e macNem1.NW_012012100v1         122852 24049 +   1495729 I

a score=9428.000000
s hg38.chr6_GL000254v2_alt      1077601 3 +   4827813 GCA
s panTro5.chr6                 30043264 3 + 175400573 GCA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30273905 3 + 173848474 GCA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6082355 3 +   6154872 GCA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74750222 3 + 122973662 GCA
i nomLeu3.chr1a                C 0 C 0
s macFas5.chr4_KE145577_random   136761 3 +    231697 ACA
i macFas5.chr4_KE145577_random I 5 I 5
s cerAty1.NW_012002711v1         724920 3 +    766320 GCA
i cerAty1.NW_012002711v1       C 0 C 0
s chlSab2.chr17                29212798 3 -  71996105 GCA
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          20831 3 +    273075 GCA
i manLeu1.NW_012101121v1       C 0 C 0
e canFam3.chr12                71532675 0 -  72498081 I
e saiBol1.JH378364               118304 2763 +    187130 I
e aotNan1.NW_018496904v1         113825 21032 -    383796 I
e cebCap1.NW_016107755v1         431283 43575 -   1771730 T
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2937024 1465 -   3067355 M
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e rheMac8.chr4                 30517041 13 + 172585720 I

a score=458841.000000
s hg38.chr6_GL000254v2_alt      1077604 140 +   4827813 GGCCACATGGTCATAAAGAGATAAAGAAGGAAAATGTACTAAGCCACCATCCCCCCTACTTCTTGCTTTCCCTTTCATGCACTGGCCAGGCACCTA-TCGGTTGGGGCCCCCTCAACGA-CCCCTTCCCCACCTCACCAAAA
s panTro5.chr6                 30043267 140 + 175400573 GGCCACATGGTCATAAAGAGATAAAGAAGGAAAATGTACTAAGCCACCATCCCCCCTACTTCTTGCTTTCCCTTTCATGCACTGGCCAGGCACCTA-TCGGTTGGGGCCCCCTCAACGA-CCCCTTCCCCACCTCACCAAAA
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30273908 140 + 173848474 GGCCACATGGTCATAAAGAGATAAAGAAGGAAAATGTACTAAGCCACCATCCCCCCTACTTCTTGCTTTCCCTTTCATGCACTGGCCAGGCACCTA-TCGGTTGGGGCCCCCTCAACGA-CCCCTTCCCCACCTCACCAAAA
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6082358 140 +   6154872 GGCCACATGGTCATAAAGAGATAAAGAAGGAAAATGTACTAAGCCACCATCCCCCCTACTTCTTGCTTTCCCTTTCATGCACTGGCCAGACACCTA-TCGGTTGGGGCCCCCTCAACGA-CCCCTTCCCCACCTCACCAAAA
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74750225 140 + 122973662 GGCCACATGGAAACAAAGAGATAAAGAAGCAAAATATACTAAGACACAAT--CCCCTACTTCCTGCTTTCCCTTTGACCCAGTGTCCAGGAGCCTATTTGGTCGGGGGCCCCTCAGTGATCCCCCTCCCCACCTCACCAAAG
i nomLeu3.chr1a                C 0 C 0
s rheMac8.chr4                 30517054 139 + 172585720 AGACACATAGACACAAAGAGATAAAAAAGCAAAATGTACTAAGCCATC-CCCCAGCTCCTTCCTGCTTTCCTTTTCATGTACGGGCCAGGTGCCAA-TCAGTTGGGGCCCCCTCGACGA-CCCCCTCCCCACCTCACCAAAT
i rheMac8.chr4                 I 13 C 0
s macFas5.chr4_KE145577_random   136769 139 +    231697 AGACACATGGACACAAAGAGAGAAAAAAGCAAAATGTACTAAGCCATC-CCCCAGCTCCTTCCTGCTTTCCTTTTCATGCACCGGCCAGATGCCGA-TCAGTTGGGGccccctcgacga-ccccctccccacctcaccaaag
i macFas5.chr4_KE145577_random I 5 C 0
s cerAty1.NW_012002711v1         724923 140 +    766320 GCCCACATGGTCATAAAGAGATTAAGAAGCAAAATGTACTAAGCTACCACCCCCTCTCCTTCTGGCTTTCCCTTTCATACACTGGCCAGGAGCCTA-TCGGTTGGGGCCCCCTCAATGA-CCCCCTCCCCACCTCACCAAAA
i cerAty1.NW_012002711v1       C 0 M 3097
s chlSab2.chr17                29212801 139 -  71996105 GCCCATATGGTCATAAAGAGATAAAGAAGCAAAATGTACTAAGCCACCACCCCCTCTCCTTCTTGCTTTCCCTTTCATACACTGGCCAGGAGCCTA-TCGGTTGGGGccccctcaacga-ccccctccccacctcaccaaa-
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          20834 139 +    273075 GCCCACATGGTCATAAAGAGATAAAGAAGCAAAATGTACTAAGCCACCACCCCCTCTCCTTCTGGCTTTCCCTTTCATACACTGGCCAGGAGCCTA-TCGGTTGGGGccccctcaatga-ccccctccccacctcaccaaa-
i manLeu1.NW_012101121v1       C 0 C 0
e canFam3.chr12                71532675   0 -  72498081 I
e saiBol1.JH378364               118304 2763 +    187130 I
e aotNan1.NW_018496904v1         113825 21032 -    383796 I
e cebCap1.NW_016107755v1         431283 43575 -   1771730 T
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2937024 1465 -   3067355 M
e macNem1.NW_012012100v1         122852 24049 +   1495729 I

a score=1070304.000000
s hg38.chr6_GL000254v2_alt      1077744 411 +   4827813 AATGTagtttaggctagcttgcaacatagataattgtaccctttcttatcaactaagtgcagccattagggacataagtcaaatgtttaaagagtcctgagacaatcacaatgcattatgggctgcaacaaaatgcagcaaaaaaaaaa--aaaaaaaccctaaggaacatacttgaagtctta----aactaccaataggtgacatccgggaagatcgtaagtccttggtactcagctaatgagcaactgggggagggagttgcgcactagggaataaa---------ttgttgaaactctccctggtgtgcctgcattccagacacccaatattgcaaaaccgtcactaacactctcacttttgctgttctctgggtctcagagtccattctttgggtttggatgggtgcgtttgtttctcata
s panTro5.chr6                 30043407 404 + 175400573 AATGTagtttaggctagcttgcaacatagataattgtaccctttcttatcaactaagtgcagccattagggacataagtcaaatgtttaaagagtcctgagacaatcacaatgcattatgggctgcaacaaaatgcagcaaaaaaaaaa---------ccctaaggaacatacttgaagtctta----aactaccaataggtgacatccgggaagatcgtaagtccttggtactcagctaatgagcaactgggggagggagttgagcactagggaataaa---------ttgttgaaactctccctggtgtgcctgcattccagacacccaatattgcaaaactgtcactaacactctcacttttgctgttctctgggtctcagagtccattctttgggtttggatgggtgcgtttgtttctcata
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30274048 403 + 173848474 AATGTagtttaggctagcttgcaacatagataattgtaccctttcttatcaactaagtgcagccattagggacataagtcaaatgtttaaagagtcctgagacaatcacaatgcattatgggctgcaacaaaatgcagcaaaaaaaaa----------ccctaaggaacatacttgaagtctta----aactaccaataggtgacatccgggaagatcgtaagtccttggtactcagctaatgagcaactgggggagggagttgagcactagggaataaa---------ttgttgaaactctccctggtgtgcctgcattccagacacccaatattgcaaaactgtcactaacactctcacttttgctgttctctgggtctcagagtccattctttgggtttggatgggtgcgtttgtttctcata
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6082498 404 +   6154872 AATGTagtttaggctagcttgcaacatagataattgtacccttccttatcaactaagtgcagccattagggacataagtcaaatgtttaaagagtcctgagacaatcacaatgcattatgggctgcaacaaaatgcagcaaaaaaaaaa---------ccctaaggaacatacttgaagtctta----aactaccaagaggtgacatccgggaagatcgtaagtccttggtactcagctaatgagcaactgggggagggagttgagcactagggaataaa---------ttgttgaaactctccctggtgtgcctgcattccagacacccaatattgcaaaaccgtcactaacactctcacttttgctgttctctgggtctcagagtccattctttgggtttggatgggtgcgtttgtttctcata
i gorGor5.CYUI01015250v1       C 0 C 0
s nomLeu3.chr1a                74750365 397 + 122973662 AATTTAGTTTGGGCTAGCTTGC------------------------CATCACCTAAGTGcagccaatagggccataagtcaaatgtttaaagagtcctgagacagtcgccatgcattatgggctgcaacaaaatgcagcaaaaaatgcagcaaacagaccctaaagaacacacttgaagtcttagtccaactaccaataggtgatgcccaggaagactataaccccatagtcctcagctaatgaggaattgggggagggacttgcacactagggaagaaattgt-----ttgttgagactgtcccaggtgtgcctgtgctccagacacctgattttgcaagactgtcattaaaagtctgtcttttgctgttctctgggtctctaagtctattctttgggtttgaatgggtgagtttctttctcaca
i nomLeu3.chr1a                C 0 I 24661
s rheMac8.chr4                 30517193 404 + 172585720 GATTTagtttaggctagcttgcaatgtagataattgtaccctttcttatcacctaaatgcagccattagggccataaattaaatgtttaaggagtcctgagacaatcgcaatgcattatgggctgcaacaaaatgcagcaaaaaga------------ctctaaagaacatactggaagctttaatcaaacta-caataggcaacatccagaaagactgtaaccccatagtactcagctaatgaggaactgggggagggacgtgggcactacggaataaatttt-----ttgttgaaaccgtccctggtgtgcctgcattccagacacccgatactgcaaaactgttgctaaaagtctcactttcactgttctctgag----agagacaattctttgggtttggatgggtgggtttgtttcctaca
i rheMac8.chr4                 C 0 C 0
s macFas5.chr4_KE145577_random   136908 404 +    231697 aatttagtttaggctagcttgcaatgtagataattgtaccctttcttatcacctaaatgcagccattagggccataaattaaatgtttaaggagtcctgagacaatcgcaatgcattatgggctgcaacaaaatgcagcaaaaaga------------ctctaaagaacatactggaagctttaatcaaacta-caataggcaacatccagaaagactgtaaccccatagtactcagctaatgaggaactgggggagggacgtgggcactacggaataaatttt-----ttgttgaaaccgtccctggtgtgcctgcattccagacacccgatactgcaaaactgttgctaaaagtctcactttcactgttctctgag----agagacaattctttgggtttggatgggtgggtttgtttcctaca
i macFas5.chr4_KE145577_random C 0 C 0
s chlSab2.chr17                29212940 414 -  71996105 aatttagtttaggctagcttgcaacatagataattgtaccatttcttatcaactaagtgcaaccattagggccataagtcaaatgtttaaagagtcctgagacaatagcaatgcattatgggctgcaacaaaatgcagcaaaaaga------------cactaaggaacatacttgaagtgttaatcaaactaccaataggtgacatctgggatgatcataagcccttggtactcagctaatgaggaaatgggggagggacttgagcactagcgaatacattgttgaaattgttgaaaccgtccctggtgtgtctgcattccagacacccgatattgcaaaaccgtcactcacagtctcacttttgctcttctccgggtctctgagtccattctttgggtttggatgggtgtgtttgtttctcata
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          20973 414 +    273075 aatttagtttaggctagcttgcaacatagataattgtaccctttcttatcaactaagtgcagccattagggccataagtcaaatgtttaaagagtcctgagacaatagcaatgcattatgggctgcaacaaaatgcagcaaaaaga------------cactaaggaacatacttgaaatcttaatcaaactaccaatagatgacatctgggaagatcataagcccttggtactcagctaatgaggaaatgggggagtgacttgagcactagcgaatacattgttgaaattgttcaaaccgtccctggtgtgtctgcattccagacacccgatattgcaaaaccatcactcacagtctcacttttgctcttctccgggtctctgagtccattctttgggtttggatgggtgtgtttgtttctcata
i manLeu1.NW_012101121v1       C 0 C 0
e canFam3.chr12                71532675   0 -  72498081 I
e saiBol1.JH378364               118304 2763 +    187130 I
e aotNan1.NW_018496904v1         113825 21032 -    383796 I
e cebCap1.NW_016107755v1         431283 43575 -   1771730 T
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2937024 1465 -   3067355 M
e cerAty1.NW_012002711v1         725063 3097 +    766320 M
e macNem1.NW_012012100v1         122852 24049 +   1495729 I

a score=384519.000000
s hg38.chr6_GL000254v2_alt      1078155 174 +   4827813 ATCTAGTTGCCTATATGgggatctctgtgcttgtgtgaagtgagtgagactctgcctgaaaggagaaacacgtaccaattgattcatgtggcccattctatctggatgtcctggctcctcgcagaagccatagacaaacttgaaactgttattcaggacacaatgaaagtgaca
s panTro5.chr6                 30043811 174 + 175400573 ATCTAGTTGCCTATATGgggatctctgtgcttgtgtgaagtgagtgagactctgcctgaaaggagaaacacgtaccaattgattcatgtggcccattctatctggatgtcctggctcctcgcagaagccatagacaaacttgaaactgttattcaggacacaatgaaagtgaca
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30274451 174 + 173848474 ATCTAGTTGCCTATATGgggatctctgtgcttgtgtgaagtgagtgagactctgcctgaaaggagaaacacgtaccaattgattcatgtggcccattctatctggatgtcctggctcctcgcagaagccatagacaaacttgaaactgttattcaggacacaatgaaagtgaca
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6082902 174 +   6154872 ATCTAGTTGCCTATATGgggatctctgtgcttgtgtgaagtgagtgagactctgcctgaaaggagaaacacgtaccaattgattcatgtggcccattctatctggatgtcctggctcctcgcagaagccatagacaaacttgaaactgttattcaggacacaatgaaagtgaca
i gorGor5.CYUI01015250v1       C 0 C 0
s rheMac8.chr4                 30517597 170 + 172585720 ATCTAGTggcctgtatggggatcactgagcttgcatga----agtgagactttggcggaaagaggaaaagtgtaccactggattcatgtggcccattctgtccagatgtccaggttccccacagaagccacagacaaacttgaaactgttatttagaagacaacgaaagtgaca
i rheMac8.chr4                 C 0 N 0
s macFas5.chr4_KE145577_random   137312 170 +    231697 ATCTAGTggcctgtatggggatcactgagcttgcatga----agtgagactttggtggaaagaggaaaagtgtaccactggattcatgtggcccattctgtccagatgtccaggttccccacagaagccacagacaaacttgaaactgttatttagaagacaacgaaagtgaca
i macFas5.chr4_KE145577_random C 0 C 0
s chlSab2.chr17                29213354 174 -  71996105 GTCTAGTggcctgtatggggatctctgtgcttgtgtgaagtgagtgagactttgcctgaaagcggaaacacgtaccagttgattcatgtggcccattctatctggatgtcccggctcctcacagaaactgtagacaaacttgaaactgttattcaggacccaatgaaagtgaca
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          21387 174 +    273075 GTCTAGTAGCCTGTATGgggatctctgtgcttgtgtgaagtgagtgagactttgcctgaaaggggaaacacgtaccagttgattcatgtggcccactctatctggatgtcccggctcctcacagaaaccatagacaaacttgaaactgttattcaggacacaatgaaagtgaca
i manLeu1.NW_012101121v1       C 0 C 0
e canFam3.chr12                71532675   0 -  72498081 I
e saiBol1.JH378364               118304 2763 +    187130 I
e aotNan1.NW_018496904v1         113825 21032 -    383796 I
e cebCap1.NW_016107755v1         431283 43575 -   1771730 T
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2937024 1465 -   3067355 M
e cerAty1.NW_012002711v1         725063 3097 +    766320 M
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74750762 24661 + 122973662 I

a score=72170.000000
s hg38.chr6_GL000254v2_alt      1078329 58 +   4827813 tgggggtacgggagggtggggtggaaagcgggcaccacagcaaccaggcaacctcatg
s panTro5.chr6                 30043985 58 + 175400573 tgggggtacgggagggtggggtggaaagcgggcatcacagcaaccaggcaacctcatg
i panTro5.chr6                 C 0 C 0
s panPan2.chr6                 30274625 58 + 173848474 tgggggtacgggagggtggggtggaaagcgggcatcacagcaaccaggcaacctcatg
i panPan2.chr6                 C 0 C 0
s gorGor5.CYUI01015250v1        6083076 58 +   6154872 tgggggtacgggagggtggggtggaaagcgggcaccacagcaaccaggcaatctcatg
i gorGor5.CYUI01015250v1       C 0 C 0
s macFas5.chr4_KE145577_random   137482 48 +    231697 cagggaaaaaca----------gaaaagcaggcaccgcggcaaccaggcaaacttgtg
i macFas5.chr4_KE145577_random C 0 N 0
s chlSab2.chr17                29213528 53 -  71996105 cgcgggtgtaga-----ggggtggaaagcaggcaccatggcaagcaggcaacctcgtg
i chlSab2.chr17                C 0 C 0
s manLeu1.NW_012101121v1          21561 53 +    273075 cgggggtgtaga-----ggggtggaaagcaggcaccatggcaagcaggcaacctcgtg
i manLeu1.NW_012101121v1       C 0 C 0
e canFam3.chr12                71532675  0 -  72498081 I
e saiBol1.JH378364               118304 2763 +    187130 I
e aotNan1.NW_018496904v1         113825 21032 -    383796 I
e cebCap1.NW_016107755v1         431283 43575 -   1771730 T
e calJac3.chr4                 30147357 50966 + 171630274 I
e colAng1.NW_012115566v1        2937024 1465 -   3067355 M
e cerAty1.NW_012002711v1         725063 3097 +    766320 M
e macNem1.NW_012012100v1         122852 24049 +   1495729 I
e nomLeu3.chr1a                74750762 24661 + 122973662 I

a score=116993.000000
s hg38.chr6_GL000254v2_alt  1078387 89 +   4827813 TGTCTTGTGGAAGGCACTGAAAGTACTGTGGGGGTCACATcaccatgagagagctgaaggatgtggggtggtgttggggctgtctatcg
s panTro5.chr6             30044043 89 + 175400573 TGTCTTGTGGAAGGCACTGAAAGTACTGTGGGGGTCACATcaccatgagagagctgaaggatgtggggtggtgttggggctgtctatca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30274683 89 + 173848474 TGTCTTGTGGAAGGCACTGAAAGTACTGTGGGGGTCACATcaccatgagagagctgaaggatgtggggtggtgttggggctgtctatca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6083134 89 +   6154872 TGTCTTGTGGAAGGCACTGAAAGTACTGTGGGGGTCACATcaccatgagagagctgaaggatgtggggtggtgttggggctgtctatcg
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            29213581 89 -  71996105 TGTCTTGTGGGAGACACTGAAAGCACTGTGGGGGTCACCTcaccattagagagctgatggatgtggggtggtgttggggctgtctattg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      21614 89 +    273075 TGTCTTGTGGGAGACACTGAAAGTACTGTGGGTGTCGCATcaccattagagagctgacggatgtggggtggtgttggggctgtctattg
i manLeu1.NW_012101121v1   C 0 C 0
e canFam3.chr12            71532675  0 -  72498081 I
e saiBol1.JH378364           118304 2763 +    187130 I
e aotNan1.NW_018496904v1     113825 21032 -    383796 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e colAng1.NW_012115566v1    2937024 1465 -   3067355 M
e cerAty1.NW_012002711v1     725063 3097 +    766320 M
e macNem1.NW_012012100v1     122852 24049 +   1495729 I
e nomLeu3.chr1a            74750762 24661 + 122973662 I

a score=373393.000000
s hg38.chr6_GL000254v2_alt  1078476 204 +   4827813 tctctacgtaatccagcaaactgtccctgagggagcctgatgatgcctaaagaatgaatgagattactctaggtatggccaagtaggagttataattgcagcttttatgttgtctggatatcactggtagagcagattaataaatccttgggcccacagtgtgcagctgcagacttggtgagtgcattcctttccactccaatt
s panTro5.chr6             30044132 204 + 175400573 tctctacgtaatccagcaaactgtccctgagggagcctgatgaggcctaaagaatgaatgagattactctaggtatggccaagtaggagttataattgcagcttttatgttgtctggatatcactggtagagcagattaataaatccttgggcccacagtgtgcagctgcggacttggtgagtgcattcctttccactccaatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30274772 204 + 173848474 tctctacgtaatccagcaaactgtccctgagggagcctgatgaggcctaaagaatgaatgagattactctaggtatggccaagtaggagttataattgcagcttttatgttgtctggatatcactggtagagcagattaataaatccttgggcccacagtgtgcagctgcggacttggtgagtgcattcctttccactccaatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6083223 204 +   6154872 tctctacgtaatccagcaaactgtccctgagggagcctgatgaggcctaaagaatgaatgagattactctagtcatggccaagtaggagttataattgcagcttttatgttgtctggatatcactggtagagcagattaataaatccttgggcccacagtgtgcagctgcggacttggtgagtgcattcctttccactccaatt
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            29213670 204 -  71996105 tatctacatagtccagcaaactgtccctgagggagcctggtgaggcctaaagaatgaatgaaattactctaggtatggccaagtaggagttatacttgcagtttttgtgttgtctggatatcactggtagagtagatcaataaatccttaggcacacggcgtgcagctgtggatttggtgagtgcattcctttcctctccaatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      21703 204 +    273075 tatctacataatccagcaaactgtccctgagggagccgggtgaggcctaaacaatgaatgaaattactctaggtatggccaagtaggagttataattgcagtttttgtgttgtctggatatcactggtagagcagatcaataaatccttaggcacacggcgtgcagctgtggatttggtgagtgcattcctttcctctccaatt
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2938489 204 -   3067355 tctctacataatccagcaaactgtccctgagggagcctggtgaggcctaaagaatgaatgaaattactctaggtatggccaagtaggagttataattgcaatttttgtgttgtctggatatcactggtagagcagatcaataaatccttaggcacacagtgtgcagctgtggatttggtgagtgcattcctttcctctccaatt
i colAng1.NW_012115566v1   M 1465 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e saiBol1.JH378364           118304 2763 +    187130 I
e aotNan1.NW_018496904v1     113825 21032 -    383796 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e cerAty1.NW_012002711v1     725063 3097 +    766320 M
e macNem1.NW_012012100v1     122852 24049 +   1495729 I
e nomLeu3.chr1a            74750762 24661 + 122973662 I

a score=485094.000000
s hg38.chr6_GL000254v2_alt  1078680 206 +   4827813 agaaaggggatatggaatgattcacattcatgtgggatccacaacacatttatttatcatttgcctcagggctattgtaactcctctgcccgctatagtatatagtcttaagactacactagacatactggatatcctataggatattaaatcagctcatttcattgacaatttcatgtttactggggtggatgagcagcaggtag
s panTro5.chr6             30044336 206 + 175400573 agaaaggggatatggaatgattcacattcatgtgggatccacaacacatttatttatcatttgcctcagggctattgtaactcctctgcccgctatagtatatagtcttaagactacactagacatactggatatcctataggatattaaatcagctcatttcattgacaatttcatgtttactggggtggatgagcagcaggtag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30274976 206 + 173848474 agaaaggggatatggaatgattcacattcatgtgggatccacaacacatttatttatcatttgcctcagggctattgtaactcctctgcccgctatagtatatagtcttaagactacactagacatactggatatcctataggatattaaatcagctcatttcattgacaatttcatgtttactggggtggatgagcagcaggtag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6083427 205 +   6154872 agaaa-gggatatggaatgattcacattcatgtgggatccacaacacatttatttatcatttgcctcagggctattgtaactcctctgcccactatagtatatagtcttaagactacactagacatactggatatcctataggatattaaatcagctcatttcattgacaatttcatgtttactggggtggatgagcagcaggtag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74775423 204 + 122973662 agaaagaggatatggagtgattcacattcatgtggaatcaacaacatatttatttatcgtttgcctcagggctattgtaactcccctgccctctatag--tataggcttgagactatactagacatactgtgtatcttttgggatattaaatcagcacatttaattgacaactttatgttgactggggtagataagcagcaggtag
i nomLeu3.chr1a            I 24661 C 0
s chlSab2.chr17            29213874 206 -  71996105 agaaaggggatacggagtaattcatattcatgtgggacacacaacacatttatttatcatttgcctcagggctattgtaactcctctgccctctatagtatatagtcttaagactacagtagacatactggatatcctataggatattcaatcagctcatttcattgacaatttcacgttgactggggtggatgagcagcaggtag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      21907 206 +    273075 agaaaggggatacggagtgattcatattcatgtggggtacacgacacatttatttatcatttgcctcaggactattgtaactcctctgccctctatagtatatagtcttaagactacagtagacatactggatatcctataggatattcaatcagctcatttcattgacaatttcacgctgactggggtggatgaacagcaggtAG
i manLeu1.NW_012101121v1   C 0 I 3
s colAng1.NW_012115566v1    2938693 206 -   3067355 agaaaggggatacggaatgattcatattcatgtgggatacacaacacatttatttatcatttgcctcagggctattgtaactcctctgccctctatagtatatagtcttaagactacagtagacatactggatatcctataggatattaaatcagctcatttcattgacaacttcacgttgactggggtggatgagcagcaggtag
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e saiBol1.JH378364           118304 2763 +    187130 I
e aotNan1.NW_018496904v1     113825 21032 -    383796 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e cerAty1.NW_012002711v1     725063 3097 +    766320 M
e macNem1.NW_012012100v1     122852 24049 +   1495729 I

a score=830213.000000
s hg38.chr6_GL000254v2_alt  1078886 454 +   4827813 aaactgcactggagtccttggcaaaacaagcacactccagaaggtgaaggtaaaccttacagagcttcaagagtggccactgaagtgaagttttatgggtgaacaagtgccaagtgtttaggggaatgcaggtgtgtcccctccaaggtaaaagacaaactgtttcatcttgcatcctcaccagaaggaaggaagcacactgcctgatgagcctctttgagttctgatgacaccacattccacatttaggtgtgttgctttggcccacactctaggtgacataggaggaggccaccttcatgtggggcccacacgggaaaggaccttgcagcagatccaggccatggtacaagcagccagcatccctcagaccccttggggctggtggtgccagtggtggggaaagatgcaggatggagctgaaccaagcaccagtgggagagtcacaatgaag
s panTro5.chr6             30044542 454 + 175400573 aaagtgcactggagtccttggcaaaacaagcacactccagaaggtgaaggtaaaccttacagagcttcaagagtggccactgaagtgaagttttatgggtgaacaagtgccaagtgtttaggggaatgcaggtgtgtcccctccaaggtaaaagacaaactgtttcatcttgcatcctcaccagaaggaaggaagcacactgcctgatgagcctctttgagttctgatgacaccacattccacatttaggtgtgttgctttggcccacactctaggtgacataggaggaggccaccttcatgtggggcccacacaggaaaggaccctgcagcagatccaggccatggtacaagcagccagcatccctcagaccccttggggctggtggtgccagtggtggggaaagatgcaggatggagctgaaccaagcaccagtgggagagtcacaatggag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30275182 454 + 173848474 aaagtgcactggagtccttggcaaaacaagcacactccagaaggtgaaggtaaaccttacagagcttcaagagtggccactgaagtgaagttttatgggtgaacaagtgccaagtgtttaggggaatgcaggtgtgtcccctccaaggtaaaagacaaactgtttcatcttgcatcctcaccagaaggaaggaagcacactgcctgatgagcctctttgagttctgatgacaccacattccacatttaggtgtgttgctttggcccacactctaggtgacataggaggaggccaccttcatgtggggcccacacaggaaaggaccctgcagcagatccaggccatggtacaagcagccagcatccctcagaccccttggggctggtggtgccagtggtggggaaagatgcaggatggagctgaaccaagcaccagtgggagagtcacaatggag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6083632 453 +   6154872 aaagtgcactggagtccttggcaaaacaagcacactccagaaggtgaaggtaaaccttacagagcttcaagagtggccactgaagtgaagttttatgggtgaacaagtgccaagtgtttaggggaatgcaggtgtgtcccctccaaggtaaaagacaaactgtttcatcttgcatcctcaccagaaggaaggaagcacactgcctgatgagcctctttgagttctgatgacaccacattccacatttaggtgtgttgctttggcccacactctaggtgacataggaggaggccaccttcatgtggggcccacacaggaaaggaccctgcagcagatccaggccatggtacaagcagccagcatccctcagaccccttggggctggtggtgccagtggtggggaaagatgcaggatggagctgaaccaagcaccagt-ggagagtcacaatggag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74775627 453 + 122973662 aaagtgcactggagtcctttgcaaaacacatgcaacccacaaggtgaagataaaccttacacagcttcaaaagtgggcactgaagtgaagttttatgggtgaacaagtgccaagtgtttaggggaatgcaggtgtgtcccctccaaggtaaaagacaaactgtttcatcttgcatcctcaccagaagcaaggaagcacactgcctgacaagcctcttagagttctgacgacaccacattccacatctagacatattgctttggcccacagtctaggtgacataggaggatgccagcttcaagtggagcctacacaggaaaggaccctgcagcagatcca-gccatggtacaagcagtcaccatccctcagaccccctggggctggtggtgccagtggtggggaaaaatgcaggatggaactgaaccaagcaccagtgggagagtcacaatggag
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            29214080 454 -  71996105 aaagtgcactggagtccttggcaaaataagcgcactccagaaggtgaaggtaaaccttacagagtttcaagagtggccactgaagtgaagttttatgggtgaacaagtgccaagtgtttaggggaatgcagttgtgtcccctccaaggtaaaagacaaactgttgcatcttgcatcctcaccagaaggaaggaagcacactgcctgatgaggttctttgagttctgacaacaccacattccacatctaggtatgttgctttggcacacactctaggtgacgtaggaggaggccatcttcatgcggggcccacacaggaaaagaccctgcagcagatccaggccatggtgcaagcagccagcgtctctcagacaccctggggctggtggtgccagtggtggcaaaagatgcaggatggagctgaaccaagcaccagtgggagagtcacagtggag
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2938899 453 -   3067355 aaagtgcactggagtccttggcaaaataagcgcactccagaaggtgaaggtaaaccttacagagcttcaagagaggccactgaagtgaagttttatggatgaacaagtgccaagtgtttaggggaatgcagttgtgtcccctccaaggtaaaagacaaactgttgcatcttgcatcctcagcagaaggaaggaaacacactgcctggtgagcctctttgagttctgacgacaccacattccacatctaggtatattgctttggcccacactttaggtgacgtaggaggaggccactttcatgtggggcccacacaggaaaagaccctgcaacagatgcaggccatggtgcaagcagccagcatctctcagacaccctggggctggtggtgccagtggtgg-gaaagatgcaggatggagctgaaccaagcactagtgggagagtcacagtggag
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e saiBol1.JH378364           118304 2763 +    187130 I
e aotNan1.NW_018496904v1     113825 21032 -    383796 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      22113   3 +    273075 I
e cerAty1.NW_012002711v1     725063 3097 +    766320 M
e macNem1.NW_012012100v1     122852 24049 +   1495729 I

a score=1152986.000000
s hg38.chr6_GL000254v2_alt  1079340 411 +   4827813 ggcctgggattctggagtaagatcatgtcatccacagcagagacatatgctccctgttagaagcaacatttagtgttacttgtcctgatttgatagaatgcttgaccatgggacaccaaacaacaatgtggttccaagtggctgtgtgacccacaaagtcataaattgcacaggcccaacagcattcatcaacaggtgaaaatggtccacctgggttgagcttgaatcccttgctgacacc-cacagaaaacacc-caagtctgaagtggcactgaactaccaaac--agacaaatggcagttagccagccttcaccat-gggtcagcccaggcctggtaggatggg-tgcatgaatggagca--accacag-tggcaggcatgaggctat-gtatgaggc-cagc-agcactgactctcc-ca
s panTro5.chr6             30044996 411 + 175400573 ggcctgggattctggagtaagatcatgtcatccacagcagagacatatgccccctgttagaagcaacatttagtgttacttgtcctgatttgatagaatgcttgaccacgggacaccaaacaacaatgtggttccaagtggctgtgtgacccacaaagtcataaattgcacaggcctaacagcattcatcatcaggtgaaaacagtccacctgggttgagcttgaatcccatgttgacacc-cacagaaaacacc-caagtgtgatgtggcactgaacaaccaaac--agacaaatggcagttagccagccttcaccat-gggtcagcccaggcctggtaggatggg-tgcatgaatggagca--accacag-tggcaggcatgaggctat-gtatggggc-cagc-agcactgactctcc-ca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30275636 411 + 173848474 ggcctgggattctggagtaagatcatgtcatccacagcagagacatatgccccctgttagaagcaacatttagtgttacttgtcctgatttgatagaatgcttgaccacgggacaccaaacaacaatgtggttccaagtggctgtgtgacccacaaagtcataaattgcacaggcctaacagcattcatcatcaggtgaaaacagtccacctgggttgagcttgaatcccatgttgacacc-cacagaaaacacc-caagtgtgatgtggcactgaacaaccaaac--agacaaatggcagttagccagccttcaccat-gggtcagcccaggcctggtaggatggg-tgcatgaatggagca--accacag-tggcaggcatgaggctat-gtatggggc-cagc-agcactgactctcc-ca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6084085 411 +   6154872 ggcctgggattctggagtaagatcatgtcatccacagcagagacatatgccccctgttagaagcaacatttagtgttacttgtcctgatttgatagaatgcttgaccacgggacaacaaacaacaatgtggttccaagtggctgtgtgacccacaaagtcataaattgcacaggcccaacagcattcatcaacaggtgaaaatggtccacctgggttgagcttgaatcccatgttgacacc-cacagaaaacacc-caagtgtgatgtggcactgaactaccaaac--agacaaatggcagttagccagccttcaccat-gggtcagcccaggcctggtaggatggg-tgcatgaatggagca--accacag-tggcaggcatgaggctat-gtatggggc-cagc-agcactgactctcc-ca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74776080 406 + 122973662 ggcctgggattctggagtaagatcatgtcatccacagcagagacgtatgcctcctgttataagcaacattta--gttccttgtcctgatttgatagaatgcttgaccatgggacaccaagcaactatgtggttccaagtgcctgtgtgacccacgaagtcatagatggtacaaacccaacagcatccatcatgaggtgaaaatggtccacctgggttgagcttgaatcccaagttgacacc-cacagaaaacacc-caagtctgaagtgacagtgaacaaccaaac--agacaaatggaagttagccagccttcaccat-gggtcagcccaggcctggtaggaaggg-tgcatgaatggagca--accacag-aggcaggcatgaggctat-gtatggggc-caac-agcactgactccc----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30668613 422 + 172585720 GGCCTGGGATTCTGGAGTAAGATCATGTTATCCATGACAGAGACATATGCCGCATGTTAGAAGCAACTTTTAGTGTTCCTTGTCCTGATTCCATAGAATGTTTGGCCAAGGGGCACAAAGCAACTATGGGGTTCCAAGTGCCTGTGTGACCCACAAAGTCATAGATTGCACAGGCCCAACAGCATCCATCATGAGGTGAAAATGGTCCACCTGGGTTGTGCttgaatcccatgttgacaccacccagaaaacacctcaagtctgaagtggcactgaacaagaaaaccaggacaaatggaagttagccagccttcaccatggggtcagtgcaggcctggtaggatgggccgcatgaatggagcaacaccacagttggccgacatgaggctatggtatggggcacagcaagcactgactcccca--
i rheMac8.chr4             N 0 I 7
s macNem1.NW_012012100v1     146901 408 +   1495729 GGcctgggattctggagtaagatcatgttatccatgacagagacatatgccgcatgttagaagcaacttttagtgttccttgtcctgattccatagaatgtttggccaaggggcacaaagcaactatggggttccaagtgcctgtgtgacccacaaagtcatagattgcacaggcccaacagcatccatcatgaggtgaaaatggtccacctgggttgtgcttgaatcccatgttgacac--cccagaaaacacc-caagtgtgaagtggcactgaacaagcaaac--agacaaatggaagttagccagccttcaccat-gggtgagcccaggcctggtagaatggg-cacatgaatggagca--accacag-tggcaggcatgaggctat-gtatggggc-cagc-agcactaactcccc---
i macNem1.NW_012012100v1   I 24049 C 0
s chlSab2.chr17            29214534 410 -  71996105 ggcctgggattctggagtaagatcatgtcatccacagcagagacatatgccccctgttagaggcagcctttagtgttccttgtcctgattcagtagaatgcttgaccatgggacaccaagcagtgatatggttccaagtgcctgcatgacccacaaagtcatagattgcacaggcccaacagcatccatcatgaggtgaaaatggtCCACCTGGGTTCAACttgaatcccatattgacagc-cacagaaaacacc-caagtctgatgtggcactgaacagctaaac--agacaaatggaagttagcc-gccttcaccat-gggtcagcccaggcctggtaggatggg-cacatgaatggagca--accacag-tggcaggtatgaggctac-atatggggc-caga-aacactgaccccct-cc
i chlSab2.chr17            C 0 I 4
s colAng1.NW_012115566v1    2939352 410 -   3067355 ggcctgtgattctggagtaagatcatgtcatccacagcagagacatatgccccctgttagaagcagcctttagtgttccttgtcctgattcagtagaatgcttgaccatgggacaccaagcagtgatatagttccaagtgcctgcatgacccacaaagtcatagattgcacaggcccaacagcatccttcatggggtgaaaacagtccacctgggttcaaCttgaatcccatattgacacc-cacagaaaacacc-caagtctgatgtggcactgaacagctaaac--agacaaatggaagttagcc-gccttcaccat-gggtcagcccaggcctggtaggatggg-cgcatgaatggagca--accacag-tggcaggtatgaggctac-atatggggc-caga-aacactgaccccct-cc
i colAng1.NW_012115566v1   C 0 I 4
e canFam3.chr12            71532675   0 -  72498081 I
e saiBol1.JH378364           118304 2763 +    187130 I
e aotNan1.NW_018496904v1     113825 21032 -    383796 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      22113   3 +    273075 I
e cerAty1.NW_012002711v1     725063 3097 +    766320 M

a score=13674.000000
s hg38.chr6_GL000254v2_alt  1079751 10 +   4827813 gccctaccaa
s panTro5.chr6             30045407 10 + 175400573 gccctaccaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30276047 10 + 173848474 gccctaacaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6084496 10 +   6154872 gccctaccaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74776486  9 + 122973662 -ccctaccaa
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1     147309  5 +   1495729 --actac---
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29214948 10 -  71996105 gccctacaaa
i chlSab2.chr17            I 4 C 0
s colAng1.NW_012115566v1    2939766 10 -   3067355 gccctactaa
i colAng1.NW_012115566v1   I 4 C 0
e canFam3.chr12            71532675  0 -  72498081 I
e saiBol1.JH378364           118304 2763 +    187130 I
e aotNan1.NW_018496904v1     113825 21032 -    383796 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      22113  3 +    273075 I
e cerAty1.NW_012002711v1     725063 3097 +    766320 M
e rheMac8.chr4             30669035  7 + 172585720 I

a score=206888.000000
s hg38.chr6_GL000254v2_alt  1079761 81 +   4827813 ggtagatcca-gctactg-ccactcctgaatgt-c--aactcatcagca-tttggagcccatgatgtgccctag--tggggcgctattt
s panTro5.chr6             30045417 81 + 175400573 ggtagatcca-gctactg-ccactcctgaatgt-c--aactcgtcagca-tttggagcccatgatgtgccctag--tggggcactattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30276057 81 + 173848474 ggtagatcca-gctactg-ccactcctgaatgt-c--aactcgtcagca-tttggagcccatgatgtgccctag--tggggcactattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6084506 81 +   6154872 ggtagatcca-gctactg-ccactcctgaatgt-c--aactcgtcagca-tttggagcccatgatgtgccctag--tggggcactattt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74776495 82 + 122973662 ggcagatcca-cctgctg-ccacctctgaatgtcc--aactcattagca-tttgaggcccatgatgtgccctag--tggggcactgttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30669042 88 + 172585720 ggcagatccaggctgctgcccacctctgaagtc-ccaaacttatcagcattttgagtcccatgatgtgccctagtttggggcgacattt
i rheMac8.chr4             I 7 I 47
s macNem1.NW_012012100v1     147314 82 +   1495729 tgcagatcca-gctgctg-ccacttctgaatgt-cc-aactcatcagca-tttgagtcccatgatgtgccccag--tggggcactattt
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29214958 81 -  71996105 ggtagatcca-gctactg-tcacctctgaatgt-c--gactcatcagca-tttggaggctatgatgtgccccag--tggggcactattt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2939776 82 -   3067355 ggtagatgca-gctactg-ccacctctgaatgt-cc-aattcatcggca-tttgaggcccatgatgtgccccag--tggggcactattt
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr12            71532675  0 -  72498081 I
e saiBol1.JH378364           118304 2763 +    187130 I
e aotNan1.NW_018496904v1     113825 21032 -    383796 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      22113  3 +    273075 I
e cerAty1.NW_012002711v1     725063 3097 +    766320 M

a score=89243.000000
s hg38.chr6_GL000254v2_alt  1079842 45 +   4827813 ctttaggcga----ccagccactaagtaacaag-tgactacatttagcta
s panTro5.chr6             30045498 45 + 175400573 ctttaggcga----ccagccactaagtaacaag-tgactacatttagcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30276138 45 + 173848474 ctttaggcga----ccagccactaagtaacaag-tgactacatttagcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6084587 45 +   6154872 ctttaggcga----ccagccactaagtaacaag-tgactacatttagcta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74776577 50 + 122973662 ctttaggtaactacctagctactaagtgacaagttgactacatttagcta
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1     147396 46 +   1495729 ctttacgtgactacct----actaagtgacaagttgactacttttaacta
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29215039 49 -  71996105 ctttaggtgaccacctagccactaaataacaag-tgactacatttagcta
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2939858 49 -   3067355 ctttaggtgactacctagccactaagtaacaag-tgactacatttagcta
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr12            71532675  0 -  72498081 I
e saiBol1.JH378364           118304 2763 +    187130 I
e aotNan1.NW_018496904v1     113825 21032 -    383796 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      22113  3 +    273075 I
e cerAty1.NW_012002711v1     725063 3097 +    766320 M
e rheMac8.chr4             30669130 47 + 172585720 I

a score=38554.000000
s hg38.chr6_GL000254v2_alt  1079887 13 +   4827813 cttccatcctgga
s panTro5.chr6             30045543 13 + 175400573 cttccatcctgga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30276183 13 + 173848474 cttccatcctgga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6084632 13 +   6154872 cttccatcctgga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74776627 13 + 122973662 cctccatcctgga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30669177 13 + 172585720 ccaccatcttgga
i rheMac8.chr4             I 47 N 0
s macNem1.NW_012012100v1     147442 13 +   1495729 cttccatcttgga
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29215088 13 -  71996105 cttccatcctgga
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2939907 13 -   3067355 cttccattctgga
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr12            71532675  0 -  72498081 I
e saiBol1.JH378364           118304 2763 +    187130 I
e aotNan1.NW_018496904v1     113825 21032 -    383796 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      22113  3 +    273075 I
e cerAty1.NW_012002711v1     725063 3097 +    766320 M

a score=263118.000000
s hg38.chr6_GL000254v2_alt  1079900  98 +   4827813 agggccagaggttcatcttcacagaaataggcccatattccatgggtgggttttcctgtcttgctct--gacactcagccagcaccactctccgggtgct
s panTro5.chr6             30045556  98 + 175400573 agggccagaggttcatcttcacagaaataggctcatattccatgggtgggttttcctgtcttgctct--gacactcagccagcaccactctccgggtgct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30276196  98 + 173848474 agggccagaggttcatcttcacagaaataggctcatattccatgggtgggttttcctgtcttgctct--gacactcagccagcaccactctccgggtgct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6084645  98 +   6154872 agggccagaggttcatcttcacagaaataggctcatattccatgggtgggttttcctgtcttgctct--gacactcagccagcaccactctccgggtgct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74776640 100 + 122973662 agggccacaggttcatcttcacaggattaggcacctattctgtgggtgggtttttctgtcctgctctcagacactcagccagcaccactctctgggggct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30534908  98 + 172585720 agggccagaggttcatcttcacagggataggctcctagtccatgggc--gttttcgtgtcctgctctcagacactcagccagcacctctctccaggtgct
i rheMac8.chr4             N 0 C 0
s macNem1.NW_012012100v1     147455 100 +   1495729 agggccagaggttcatcttcacagggttaggcacctattctatgggtgagttttcctgtcctgctctcagacactcagccagcaccactgtctgggtgat
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29215101  99 -  71996105 agggccagaggttcatcttcacagggataggctcctattccaggggtgggttttcctgtgctgctctcagacactcagccagcaccactctct-ggtgat
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2939920  98 -   3067355 agggccaga-gttcatcttcatagggataggctcctattccaggagtgggttttcctgtgctgctctcagacactcaaccagcaccactctct-ggtgat
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e saiBol1.JH378364           118304 2763 +    187130 I
e aotNan1.NW_018496904v1     113825 21032 -    383796 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      22113   3 +    273075 I
e cerAty1.NW_012002711v1     725063 3097 +    766320 M

a score=2042373.000000
s hg38.chr6_GL000254v2_alt  1079998 574 +   4827813 gttgacattcctgatctgcaggctaggcggtgctcctagcccattctctgcctgaaggacccatttggcctggaaagttttaaagtttccatggctgtgggttccactaatcctatcaccatctgcaccacccaggagctaccagccacaaggaatgctggacaggtcttctataggcacaactcagtgccagcctggaggaagcactctga-----aagtgccatctttcagaacatggtacattgtttgaatcagagatgtctctatggtgctgtgttctcaat-ggaagaacatgtaggtccagaaatcaaaaggtggaagcaggtatggctccatgtccaatctcttagattcacccactaaggtattttgccttttttatctcccaacaatgggctgtgcgggttaggaggtcctggtttccaaaggagggtacccttaaaagtagacaaaagagagcccattgaactacacattactttagtcaccagagaagtttggagagcatgttcccagagaccacatcgtgagaagaggagtgtccttctctccaggcccaggtaataggccctcatcc
s panTro5.chr6             30045654 574 + 175400573 gttgacattcctgatctgcaggctaggcggtgctcctagcccattctctgcctgaaggacccatttggcctggaaagttttaatgtttccatggctgtgggttccactaatcctatcaccatctgcaccacccaggagctaccagccacaaggaatgctggacaggtcttctataggcacaactcagtgccagcctggaggaagcactctga-----gggtaccgtctttcagaacatggtacattgtttgaatcagagatgtctctatggtgctgtgttctcaat-ggaagaacatgtgggtccagaaatcaaaaggtggaagcaggtatggctccatgtccaatctcttagattcacccactaaggtattttgccttttttatctcccaacaatgggctgtgcgggttaggaggtcctggtttccaaaggagggtacccttaaaagtagacaaaagagagcccattgaactacacattactatagtcaccagagaagtttggagagcatgttcccagagaccacatcgtgagaagaggagtgtccttctctccagacccaggtaataggccctcatcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30276294 574 + 173848474 gttgacattcctgatctgcaggctaggcggtgctcctagcccattctctgcctgaaggacccatttggcctggaaagttttaatgtttccatggctgtgggttccactaatcctatcaccatctgcaccacccaggagctaccagccacaaggaatgctggacaggtcttctataggcacaactcagtgccagcctggaggaagcactctga-----gggtaccgtctttcagaacatggtacattgtttgaatcagagatgtctctatggtgctgtgttctcaat-ggaagaacatgtgggtccagaaatcaaaaggtggaagcaggtatggctccatgtccaatctcttagattcacccactaaggtattttgccttttttatctcccaacaatgggctgtgcgggttaggaggtcctggtttccaaaggagggtacccttaaaagtagacaaaagagagcccattgaactacacattactatagtcaccagagaagtttggagagcatgttcccagagaccacatcgtgagaagaggagtgtccttctctccaggcccaggtaataggccctcatcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6084743 574 +   6154872 gttgacattcctgatctgcaggctaggcggtgctcctagcccattctctgcctgaaggacccatttggcctggaaagttttaatatttccatggctgtgggttccactaatcctatcaccatctgcaccacccaggagctaccagccacaaggaatgctggacaggtcttctataggcacaactcagtgccagcctggaggaagcactctga-----gagtgccatctttcagaacatggtacattgtttgaatcagagatgtctctatggtgctgtgttctcagt-ggaagaacatgtgggtccagaaatcaaaaggtggaagcaggtatggctccatgtccaatctcttagattcacccactaaggtattttgccttttttatctcccaacaatgggctgtgcgggttaggaggtcctggtttccaaaggagggtacccttaaaagtagacaaaagagagcccattgaactacacattactttagtcaccagagaagtttggagagcatgttcccagagaccacatcgtgagaagaggagtgtccttctctccaggcccaggtaataggccctcatcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74776740 565 + 122973662 gttcacattcctgatccgcaggctaggcggtgctcctagcccattatctgcctgaaggacccacttggcagggaaagtttcagtgtttccatggctgt------------tcctatcaccatctgcaccacccaggggctgccagccacaagtaatgctggacaggtcttctacaggcacagctcagtgccagcatggaggaagcactctgaggggtgggtgccatccttcaggacatgatgcattgcttgaatcagagacatctctacagtgctgtgttctcaataggaagaacatgtgtgtccagaaatcaaaaggtggaagcaggtttggctccatgtccaatgtcttagattcactcaatggggtattttgcatattttatctcccaacactgggctgtgcaggatacgaggttctggtttcca---gagggtacccttaaaaggagacaaaagacagcccactgaactacacattacggttgtcaccagagaagtttggacagtatgtgcccagaaaccacttggtgagaagaagggtctcctcctctccaggcccaggtaatagatcctcatcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30535006 563 + 172585720 gttgacattcttggtctgcaggccaggcggggcacctagcccattttctgcctgaaagacccacttggcagggaaagtttcagtgcttccatggctgtgggttccactaatcctatcaccatctgcaccacccagaggctgccagccacaaggaatgctggacaggtcttttacaggcacagctcagtgccagcctggaggaagcactctgaggggtgggtgccatctttcagaacatggtacattgtttgaatcagagacgtctctatggt-ctgtgttctcagt-ggaagaacatgtgtgtccagaaatcaaaaggtggaagcaggtttggctccatgtccaatcccttacattcacccaatggggtattttgcatgttttatct------------ttgaacagggtatgaggtcctgatttcc-aaggagggtacctttaaaaagcaacaaaaaacagcccactgaactacacatgatggttgtcaacagagaagtttggacagtgtgagctc--agaccacctggtgaaaagaggattctcctcctctccaggcccaggtaatagaccctcatcc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     147555 578 +   1495729 gttgacattcctgatccgcaggctaggcagtgctcctagcccattatctgcctgaaggacccacttggcagggaaagtttcagtgtttccatggctatgggttccaccaatcctatcaccatctgcacca--caggggctgccagccacaaggaatgctggacaggtcttctacaggcacagctcagtgccagcctggaggaagcactctgaggggtgggggccatctttcaggacacggtgcattgtttgaatcagagacatctctaccgtgctgtgttctcaataggaagaacatgtgggtccagaaatcaaaaggtggaagcaggtttggctccatgtccaatctcttagattcactcaatgctgtattttgcatattttatctcccaacactgggctgtgcaaaatacaaggttctggtttccaaaagagggtacccttaaaaggagacaaaagacagcccacagaaatacacattatggttgtcaccagagaagtttggacagtgtgtgcctagagaccacttggtgagaagaggattctcctcctctccaggcccaggtaatatatcctcatcc
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29215200 578 -  71996105 gttgacattcctgatccacgtgctaggcagtgctcctagcccattatctgcctgaaggacccacttggcagggaaagtttcagtgtttccatggctgtgggttccactaatcctatcaccatctgcaccacccagaggctgccagccacaaggaatactgcacaggtcttctacaggcatagctcagtgccagcctggaggaagcactctgaggggtgggtgccatctttcagaacatggtacattgtttgaatcagagacatctctatggtgctgtgttcttagt-ggaagaacatgtgggtccagaaatcaaaaggtggaagcaggtatggctccatgtccaatctctttgattcacccactagggtattttgcatgttttatct-ccaacactgggctgtgcaggttaggaggtcctggtttccaaaggagggtacccttaaaaggagacaaaagagagcctgttgaactacacattactttagtcaccgcagaagtttgaacaatgtgtgcccagagaccacctagtgagaaggggagtctcctcctctccaggcccaggtaatagatcctcatct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      22116 578 +    273075 GTTGGCATTCCTGATCCACATGCCAGGCGGTGCTCCTAGCCCATTATCTCCCTGaaggacccacttggcagggaaagtttcagtgcttccgtggctgtgggttccactaatcctatcaccaactgcaccacccaggggctgccagccacaaggaatgctgcacaggtcttctataggcacagctcagtgccagcctggaggaagcactctgaggggtgggtgccatctttcagaacatggtacattgtttgaatcagagacgtctctgtggtgctgtgttctcagt-ggaagaacatgtgggtccagaaatcaaaaggtggaagcaggtttggctccatgtccaatctctttgattcacccactagggtattttgcatgttttatct-ccaacactgggctgtgcaggttaggaggtcctggtttccaaaggagggtacccttaaaaggagacaaaagagagcccgttgaactacacattactttagtcaccacagaagtttggacaatatgtgcccagagaccacctggtgagaagaggagcctcctcctctccaggcccaggtaatagatcctcatct
i manLeu1.NW_012101121v1   I 3 C 0
s colAng1.NW_012115566v1    2940018 578 -   3067355 ggtgacattcctgatccacatgctaggcagtgctcctagcccattatctccctgaaggacccacttggcagggaaagtttcagtgtttccgtggctgtgggctccactaattctatcaccatctgcaccacccagaggctgccagccacaaggaatgctggacagctcttctataggcacagctcagtgccagcctggagggagcactttgaggggtgggtgccatctttcagaacatggtacattatttgaatcagagacatctctatggtgctgtgttctcact-ggaagaacatgtgggtccagaaatcaaaaggtggaagcaggtatggctccatgtccaatctctttgattcacccactagggtattttgcattttttatct-ccaacactgggctgtgcaggttaggaggtcctggtttccaaaggagggtacacttaaaaggagacaaaagagagcctgttgaactacacattactttagtcaccacagaagtttggacagtgtgtgcccagagaccacctgttgagaagaggagtctcctcttctccaggcccaggtaatagattctcatct
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e saiBol1.JH378364           118304 2763 +    187130 I
e aotNan1.NW_018496904v1     113825 21032 -    383796 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e cerAty1.NW_012002711v1     725063 3097 +    766320 M

a score=1364782.000000
s hg38.chr6_GL000254v2_alt  1080572 317 +   4827813 ccaggaggaggcatggctgctttcacacaatgagggcagaagtgtgtgtggaaaccagacatccacctgggaaccttctgggtccccttgccccattgtaagtgtgagcagaatcatccagcaatttagcctgagaggatttgatttccaagaacccagacccatctgggcagcaggtttgagtcacactcctgggtaaTCTcccaaggccctgctcctgtgctctgacatcctcagtagcattggtatggaggccctgcttcccatgggctgttcccagtcagtgatggctcacaccagtgacactaaggcaggac
s panTro5.chr6             30046228 317 + 175400573 ccaggaggaggcatggctactttcacacaatgagggcagaagtgtgtgtggaaaccagacatccacctgggaaccttctgggtccccttgccccattgtaagtgtgagcagaatcatccagcaatttagcctgagaggatttgatttccaagagcccagacccatctgggcagcaggtttgagtcacactcctgggtaaTCTcccaaggccctgctcctgtgctctgacatcctcagtagcattggtatggaggccctgcttcccatgggctgttcccagtcagtgatggctcacaccagtgacactaaggcaggac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30276868 317 + 173848474 ccaggaggaggcatggctactttcacacaatgagggcagaagtgtgtgtggaaaccagacatccacctgggaaccttctgggtccccttgccccattgtaagtgtgagcagaatcatccagcaatttagcctgagaggatttgatttccaagagcccagacccatctgggcagcaggtttgagtcacactcctgggtaaTCTcccaaggccctgctcctgtgctctgacatcctcagtagcattggtatggaggccctgcttcccatgggctgttcccagtcagtgatggctcacaccagtgacactaaggcaggac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6085317 317 +   6154872 ccaggaagaggcatggctactttcacacaatgagggcagaagtgtgtgtggaaaccagacatccacctaggaaccttctgggtccccttgccccattgtaagtgtgagcagaatcatccagcaatttagcctgagaggatttgatttccaagaggccagacccatctgggcagcaggtttgagtcacactcctgggtaaTCTcccaaggccctgctcctgtgctctgacatcctcagtagcattggtatggaggccctgcttcccatgggctgttcccagtcagtgatggctcacaccagtgacactaaggcaggac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74777305 316 + 122973662 ccaggagaaggcatggctactttcacacaatgagggtagaagtgtgtgtggaaaccagacatccacctgagagccttctggtttcccttgccccattgtaagtgtgagcagaatcatctagcaattcagcctaagaggatttgatttccaagggccaagacccggcagggcagcaggtttgagtcacactcctgggtaaTCTcccaaggccctgctactgtgctctgacatcctcagta-cactggtgctgaggccctgcttcccatgggctgttcccaaccactgatgggtcacaccagtgacactaaggcaggac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30535569 316 + 172585720 ccaggaggaggcacagctactttcacacaatgagggcagaagtgtgtgcggaaaccagacatccacctg-gggccttctggttccccttgcctcattgtaagtgtgagcagaatcatccagcaattcagccagagacgacttgatttcaaagggcccagaccggtcagggcagaaggtttgagtcacactcctgggtaCTCTcccaaggccctgctcctgtgctctgacaccctcagtagcattggtgctgaggctctgcttcccatgggctgttcccaaccagtgacgggtcatatcagtgacactaaggcaggac
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     148133 317 +   1495729 ccaggaggaggcatggctactttcaaacaatgagggtagaagtgtgtgtggaaaccagaggtccacctgtgagccttctggtttcccttgccccattgtaagtgtgagcagaatcatccagcaattcagcctgagaggatttgatttccaaggccccagacctgtcagggcagaaggtttgagtcacactcttgggtaatcctccaaggccGTgctcctgtgctctgacaccctcagtagcattggtgctgaggctctgctttccatgggctgttcccaaacattgatgggtcataccagtgacactaaggcaggac
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29215778 316 -  71996105 tcaggaggaggcatggctgctttcacacag-gagggcgaaagcatgtgtggaaaccagagatccacctgggggccttctggtttcccttacctcattgtaagtgtgagcagaatcatccagcaattcagcctgagaggatttgatttccaagggcacagacccgtcagggcagcaggtttgagtcacactcgtgggtaaTCTcccaaggccctgctcctgtgctctgacaccctcagtagcattggtgctgaggccctgcttcccatggactgttcccaaccagtgacgggtcacaccagtgacactaaggcaggac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      22694 278 +    273075 tcaggaggaggcatggctgctttcacacag-gagggcaaaagcatgtgtggaaaccagagatccacctgggggccttctggtttcccttacctcattgtaagtgtgagcagaatcatccagcaattcagcctgagaggatttgatttccaagggcacagacccgtcagggcagcaggtttgagtcacactcgtgggtaatcccccaaggccCTGCTCCTGTGCTCTGACATCCTCAGTAGCATTGGTACTGACCTTCTGCTTCCCATGggct--------------------------------------gcaggac
i manLeu1.NW_012101121v1   C 0 N 0
s colAng1.NW_012115566v1    2940596 316 -   3067355 tcaggaggaggcatggctgctttcacacag-gagggcaaaagcatgtgtggaaaccagagatccacctgggggccttctggtttcccttacctcattgtaagtgtgagcagaatcatccagcaattcagcctgagaagatttgatttccaagggcacagacccgtcagggcagcaggtttgagtcacacttgtgggtaatcccccaaggccctgctcctgtgctctgacatcctcagtagcattggtgctgagtttctgcttgccatgggctgttcccaaccagtgacaggtcacaccagtgacactaaggcaggac
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018496904v1     134857 317 -    383796 CcaagaggaggcatggctactttcacacaatgagagcagaagtatgtgtagaaaccagagatccacctgggagccttctgatttcccttaccccattgtaagtgtgagcagaatcatccagcaattcagcctgagattatttgatttccaaaggcccagatccatcagggcagaaggtttgagtcacacTCCTGAGTTATCTcccaaggccctgcacctgtgccctgacatccgcagcagcattggtggtgaggggctccttcctatgggctgctctctaccagttatgggtcacaccagtgacactaaggcaggac
i aotNan1.NW_018496904v1   I 21032 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e saiBol1.JH378364           118304 2763 +    187130 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e cerAty1.NW_012002711v1     725063 3097 +    766320 M

a score=15015.000000
s hg38.chr6_GL000254v2_alt  1080889 3 +   4827813 att
s panTro5.chr6             30046545 3 + 175400573 att
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30277185 3 + 173848474 att
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6085634 3 +   6154872 att
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74777621 3 + 122973662 att
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30535885 3 + 172585720 att
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     148450 3 +   1495729 att
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29216094 3 -  71996105 att
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     179661 3 +    273075 att
i manLeu1.NW_012101121v1   N 0 C 0
s colAng1.NW_012115566v1    2940912 3 -   3067355 att
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018496904v1     135174 3 -    383796 att
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12            71532675 0 -  72498081 I
e saiBol1.JH378364           118304 2763 +    187130 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e cerAty1.NW_012002711v1     725063 3097 +    766320 M

a score=221334.000000
s hg38.chr6_GL000254v2_alt  1080892 47 +   4827813 cctgggagacaggggactcctctgatggccaatggtggctccgggtc
s panTro5.chr6             30046548 47 + 175400573 cctgggagacaggggactcctctgatggccaatggtggctccgggtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30277188 47 + 173848474 cctgggagacaggggactcctctgatggccaatggtggctccgggtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6085637 47 +   6154872 cgtgggagacaggggactcctctaatggccaatggtggctccgggtc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74777624 47 + 122973662 cctgggagacagaggattcctctgattaccaactgtagctcgaggac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30535888 47 + 172585720 cctgggagacaggggagtcctctgatggccaactgtacctcgaggac
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     148453 47 +   1495729 cttgggagacacaggactcctctgatggccaactgtagctccaggac
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29216097 47 -  71996105 cctgggagacaagggactcctctgatggccaacagtggctccaggac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     179664 47 +    273075 cctgggagacaggggtctcctctgatggccaactgtggctggaggac
i manLeu1.NW_012101121v1   C 0 N 0
s colAng1.NW_012115566v1    2940915 47 -   3067355 cctgggagacaagggactcctctgatggccaacagtagctccaggac
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           121067 47 +    187130 cctgggagacagggtactcctctgatggccagctgtggctccagtac
i saiBol1.JH378364         I 2763 C 0
s aotNan1.NW_018496904v1     135177 47 -    383796 ccagggagacaggggacacctctgatggtgaactatggttccaggac
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12            71532675  0 -  72498081 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e cerAty1.NW_012002711v1     725063 3097 +    766320 M

a score=1795625.000000
s hg38.chr6_GL000254v2_alt  1080939 359 +   4827813 tcctccatggccttgctcaactctccttagattgcctgtggtctaggaaacatccagtaaaccttctctccttctgtccatcactgggggtc----acacttgcatctcggcctgttgcctttcccagggtaacctgactccctcacaatatcgtctgacaggtatgtcccctaataaaatgctgtaactttaaccccatgatggcacttgctttttggaggatttggactaC--AAAATCATTTTCATCTACACACCAGTGTCCT----CTTATTCCAATTTGTAAAATCCTTTTGTTTATTCAACTTCTTCTACTTGCGTTGGCTCCATTTTGCTGGTATTTGTATTATGTTTTtgagttcgtcaat
s panTro5.chr6             30046595 359 + 175400573 tcctccatggccttgctcaactcgccttagattgcctgtggtctaggaaacatccagtaaaccttctctccttctgtccatcactgggggtt----acacttgcatcttggcctgttgcctttcccagggtaacctgactccctcacaatatcgtctgacagctatgtcccgtaataaaatgctgtaactttaatcccatgatggcacttgctttttggaggatttgggctaC--AAAATCATTTTCATCTGCACACCAGTGTCCT----CTTATTCCAATTTGTAAAATCCTTTTGTTTATTCAACTTTTTCTACTTGCGTTGGCTCCATTTTGCTGGTATTTGTATTATGTTTTtgagttcgtcaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30277235 359 + 173848474 tcctccatggccttgctcaactcgccttagattgcctgtggtctaggaaacatccagtaaaccttctctccttctgtccatcactgggggtt----acacttgcatcttggcctgttgcctttcccagggtaacctgactccctcacaatatcgtctgacagctatgtcccgtaataaaatgctgtaactttaatcccatgatggcacttgctttttggaggatttgggctaC--AAAATCATTTTCATCTGCACACCAGTGTCCT----CTTATTCCAATTTGTAAAATCCTTTTGTTTATTCAACTTTTTCTACTTGCGTTGGCTCCATTTTGCTGGTATTTGTATTATGTTTTtgagttcgtcaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6085684 359 +   6154872 tcctccatggccttgctcaactctccttagattgcctgtggtctaggaaacatccagtaaaccttctctccttctgtccatcactgggggtc----acacttgcatcttggcctgttgcctttcccagggtaacctgactccctcacaatatcgtctgacaggtatgtcccctaataaaatgctgtaactttaatcccatgatggcacttgctttttggaggatttggactaC--AAAATCATTTTCATCTGCACACCAGTGTCCT----CTTATTCCAGTTTGTAAAATCCTTTTGTTTATTCAACTTCTTCTACTTGCGTTGGCTCCATTTTGCTGGTATTTGTATTATGTTTTtgagttcgtcaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74777671 366 + 122973662 tcctccatggccttgctcaactctccttagattgcctgtggtctaggacacatccagtaaaccttctctccttctgtccatcactgggggtcactgacacttggatcttggtctgttgcctttcccagggtaacctacctccctcgccacatcatctgtcaggtgtgtcccgtaataaaatgctgtaactttaatctcatgatggcacttgcttttcggagtatttgtactaC--AAAATCGTTTTCATCTGCACACCAGTGACCTCTTACTTATTCCAATTTGTAAAATCCTTTTGTTTATTCAACTTCTTCTACCTGCATTGGCTCCGTTTGGCTGGTATTTGTATTATGCTTTTGA-TATTTCGat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30535935 355 + 172585720 tcctctacggccttgcttaactctccttagattgcctgtggtctaggatacgtccagtaaaccttctctccttctgtccatcacagggggtc----acactcgcatcttggtctgttgcctttctcagggtaacctgtctccctcactatatcttctgacaggtgtgtcccct-ataaaatgctgtaactttaatcccatgatggagcttgctttttggagtatctggactaC--AAAATCATTTTCATCTGCACACCCATGTCCTC----TTATTCCAATTTGTAAAATACTTTTGTTTATTCAA---CTTCTATCTGCATTGGAACCATTTTGCTGATATTTGTATTGTGCTTTTGAGTTTGCCaat
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     148500 367 +   1495729 tcctccatggccttgctcaactctccttagattgcctgtggtataggacacatccattaaatcttctctccttctgtccatcactgggggtcactgacacttggatcttggtctgttgactttcccagggtaacctacctcccttgccgcatcatctgtcaggtgtgtcccctaataaaatgctgtaactttaatctcatgatggcacttgctttttggagtatttgtactaC--AAAATCGTTTTCATCTGCACACCAGTGACCTCTTATTTATTCCAATTTGTAAAATCCTTTTGTTTATTGAACTTCTTCTACCTGCATTGGCTCCATTTGGCTGGTATTTGTATTATGTTTTTGAGTTTGACGat
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29216144 363 -  71996105 tcttccatggccttgctcaactctccttagattgcctgtggtctaggacatgtccagcgaactctctctccttctgtccatcactgggagtc----acacttgcgtcctggtctgttgtctttcccagggtaatctgcctcccttgcaatatggtctgacaggtgtgtcccctaataaaatgctgtaacattaatcccatggtggcacttgctttttggaggatttggactaC--AAAATCATTTTCATCTGCACACCGGTGACCTCTTACTTATTCCAATTTATAAAATCCTTTTGTTTATTCAACTTCTTCTACTTGCATTGGCTCCATTTTGCTGGTATTTGTATTATGGTTTTGAATTCGTCGat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      22972 363 +    273075 tcttccatggccttgctcaactctccttagattgcttgtggtctaggacatgtccagtgaactctctctccttctgtccatcactgggagtc----acacttgcatcttggtctgttgtctttcccagggtaatctgcctcccttgcaatatcgtctgacaggtgtgtcccctaataaaatgctgtaactttaatcccatggtggcacttgctttttggaggatttggactaC--AAAATCATTTTCATCTGCACACCGGTGACCTCTTACTTACTCCAACTTGTAAAATCCTTTTGTTTATTCAACTTCTTCTACTTGCATTGGCTCCATTTTGCTGGTATTTGTATTATGTTTTTGAATTCGTCGat
i manLeu1.NW_012101121v1   N 0 C 0
s colAng1.NW_012115566v1    2940962 363 -   3067355 tcctccatggccttgctcaactctccttagattgcctgtggtccaagacatgtccagtgaactctctctccttctgtccatcactgggggtc----acacttgcatcttggtctgttgtctttcccaggataatctgcctcccttgcaatatcatctgacaggtgtgtcccctaataaaatgctgtaactttaatctcatggtgacacttgctttttggaggatttggactaC--AAAATCATTTTCATCTGCACACCGGTGACCTCTTACTTATTCCAATTTGTAAAATCCTTTTGTTTATTCAACTTCTTCTACTTGCATTGGCTTCATTTTGCAGGTATTTGTATTATGTTTTTGAATTCGTCCat
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           121114 348 +    187130 tcctccatggtcttgctcaact--ccctagattgtctgtggtctaggacacgtccagtgaaccttctctccttctgtccat----------------cacttacaTCTTCATCTGTTTCCTTTACCAGAGTAACCTACCTTTATCACTGTGTCATCTGACAGGTGTGTCCTCTAATAAAATGCTGTAACTTTAATCCAAAGGCGGCACTGGCTTTTTGGAGCATTTGGATTAC--AAAATCATTTTCATCTATGCACCAGTGACCTTTTACTTATTCCAATTCCTAAAATCCTCTTGTTTATTCAATTTCTTCTCCCTGCAGTGGCTCCATTTTGCTGGTATTTGTATCATGCTTTTGAG-TTATTGat
i saiBol1.JH378364         C 0 C 0
s aotNan1.NW_018496904v1     135224 362 -    383796 tcctccatggccttgctcaacttcccttacattgtctgtggtctaggacacatccagtaaaccttc-ccccttctgtccatcactgggggtc----acacttgcatcttggcatgttgcctttcccagggtaacctacctccctcaccatatcgtctgacctgtgtgtcccctaataaaatgctgtaacttgaatcccattttggcacttcctttttcgagcatttggactaCAAAAAATCATTTTCATCTGCACACCAATGACCTCTTAGTTATTCCAATT--TGTAATCCTTTTGTTTATTCAAATTTTTCTACCTGCATTGGCTCCATTTTGCTGATATTTGTATTATGCTTTtgagtttgtcgat
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e cerAty1.NW_012002711v1     725063 3097 +    766320 M

a score=962887.000000
s hg38.chr6_GL000254v2_alt  1081298 181 +   4827813 gtttgttgatttaa-tcactaaatttgggggtagtttgttatgcagcaatggat-aactaatGAAGCCCTCTTACATTTCCATTATTCTATACAGGTTACGTACATCTGCTTTATTTCCTTCCATTTTCATAATATTGGCCATACGTAGGGTTTCTAGTTTCTCAACGTGTAttcttttcttt
s panTro5.chr6             30046954 181 + 175400573 gtttgttgatttaa-tcactaaatttgggggtagtttgttatgcagcaatggat-aactaatGAAGCCCTCTTACATTTCCATTATTCTATACAGGTTACGTACATCTGCTTTATTTCCTTCCATTTTCATAATATTGGCCATACGTAGGGTTTCTAGTTTCTCAATGtctattcttttcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30277594 181 + 173848474 gtttgttgatttaa-tcactaaatttgggggtagtttgttatgcagcaatggat-aactaatGAAGCCCTCTTACATTTCCATTATTCTATACAGGTTACGTACATCTGCTTTATTTCCTTCCATTTTCATAATATTGGCCATACGTAGGGTTTCTAGTTTCTCAATGtctattcttttcttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6086043 181 +   6154872 gtttgttgatttaa-tcactaaatttgggggtagtttgttatgcagcaatggat-aactaatGAAGCCCTCTTACATTTCCATTATTCTATACAGGTTACGTACATCTGCTTTATTTCCTTCCATTTTCATAATATTGGCCATACCTAGGGTTTCTAGTTTCTCAACAtctattcttttcttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74778037 178 + 122973662 gtttgttgctgtaagttactaaatttgggggtagtttgttatgcaccaatggat-aactaatGAAGCCCTCTTACGTTTCCGTTATTCTACAAAGATCAAATACACCTGTTTTATTTCCTCCCATTTTGACAATATTAACCATACATAGGGTTTCTCGTTTCTCAATGCCTGTTCT----TTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30536290 182 + 172585720 gttcatggctttaagtcactaaatttgggggtagtttgttacacagcaatggat-aactcatGAAGCCCTCTTATATGTCCATTATTTTATAGAGGTTAACTACACCTATTTTATTTTCTCCTATTTTGATAATATTAGCCATGCATAGGATTTCTAGTTTCTCAACACCTAttcttttcttt
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     148867 182 +   1495729 atttcttgttttaagtcactaaatttgggggtagttttttatgcagcaatggat-aactaatGAAGTCCTCTTACATTTCCATTATTCTATAGAGGTTAACTACACCTGTTTTATTTCCTCCCACTTTGATAATATTAACCATACATGGGGTTTCTCGTTTCTCAACGCCTGTTCTTTTCTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     728216 181 +    766320 gtttgttgctttaa-tcactaaatttgggggtagtttgttacacagcaatggataaACAAATGAAGCCCTCTTACATTTCCATTATTCTATAGAGGTTCACTACATCTGTTTTATTTCCTCCCATTTTCATAATATTGGCCATACATAGGTTTTCTAGTTTCTC-ACGTCTATTCtttttttt
i cerAty1.NW_012002711v1   M 3097 I 1214
s chlSab2.chr17            29216507 181 -  71996105 gtttgttgctttaa-tcactaaatttgggggtagtttgttacacagcaatggataaACAAATGAAACCCTGTTACATTTCCATTGTTCTTTACAAGTTCACTATATCTGTTTTATTTCCTCCCATTTTCATAATATTGGCCATACATAGGGTTTCTAGTTTCTC-ACGtctattcttttcttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      23335 181 +    273075 gtttgttgctttaa-tcactaaatttgggggtagtttgttacacagcaaaggataaACAAATGAACCCCTCTTACATTTCCATTATTCTATAGAGGTTCACTACATCTGTTTTATTTCCTCCCCTTTTCATAATATTGGCCATACGTAGGGTTTCTAGTTTCTC-ACGTCTATtcttttcttt
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2941325 181 -   3067355 gtttgttgctttaa-tcactaaatttgggagtagtttgttacacagcaatggataaACAAACGAAGCCCTCTTACACTTCCATTATGCTATAGAGGTTAACTACATCTGTTTTATTTCCTCCCATTTTCATAATATTGGCCATACATAGGGTTTCTAGTTTCTC-ATGTCTATTCTTTTCTTT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           121462 156 +    187130 gtttgttgatttaagtcacaacatttggggataggttgttatacagcaaaggat-aactaatTAAGC--------------------------AGGTTATTCACATAGGTTTTATTTCCCCCCATTTGGATAATATTAGCAATGCATAGGGTCTCTAGTTTCTCAAAGCctattctattcttt
i saiBol1.JH378364         C 0 C 0
s aotNan1.NW_018496904v1     135586 182 -    383796 gtttgttgctggaagtcactaaatttgggggtagtttgttacacagcaatggat-aactaatGGAGCCCTCTCACATTTCCATTATTCTGCAGAGGTTTACTACATCTGTTTTATTCCCTCCTATTTTGGTAATATTAGCCATAAATAGAGTTTCTAGTTTCTCAATGCCTAGTCTTGTCTAC
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I

a score=799652.000000
s hg38.chr6_GL000254v2_alt  1081479 188 +   4827813 attttagttt------------------------------------------------------cttttcttttttgttccttccc-tttctccttccttctgtcc-ctccctccctctctttcttctctatttccattcaacctctcgccttccctcctttttactctgctttccttcccttttcttccccttccccttccttcttttcttctttcactccttcttctcttcctccttctttc
s panTro5.chr6             30047135 187 + 175400573 attttagttt------------------------------------------------------cttttcttttttgttccttccc-tttctccttccttctgtcc--tccctccctctctttcttctctatttccattcaacctctcgccttccgtcctttttactctgctttccttctcttttcttccccttccccttccttcttttcttctttcactccttcttctcttcctccttctttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30277775 187 + 173848474 attttagttt------------------------------------------------------cttttcttttttgttccttccc-tttctccttccttctgtcc--tccctccctctctttcttctctatttccattcaacctctcgccttccgtcctttttactctgctttccttctcttttcttccccttccccttccttcttttcttctttcactccttcttctcttcctccttctttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6086224 188 +   6154872 attttagttt------------------------------------------------------cttttcttttttgttccttccc-tttctccttccttctgtcc-ctccctccctctctttcttctctatttccattcaacctctcaccttccctcctttttactctgctttccttcccttttcttccccttccccttccttcttttcttctttcactccttcttctcttcctccttctttc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74778215 183 + 122973662 ATTTTAGTTT------------------------------------------------------ATTTTCtccttcattccttccc-tttctccttccttctgtct-ctccctccctgtctttcttctctatttctattcaagctctcactctctctccttctcactcccctttccttcccttttctttcccttccttttcc-----ttcttctttcattccttcctttgttcctccttctttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30536472 178 + 172585720 attttagttt------------------------------------------------------cttttctcctttgttacttccc-tttctccttccttctgtcc-ctccctccctctttttcttctctatttccattcaacatctcaccctccctccttctca----------cttccctttccttccctttccccttccttcttttcttctttcacttttccttccattcctccttctttc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     149049 186 +   1495729 ATTTTAGTTT------------------------------------------------------ATTTTCtccttcgttccttccc-tttctccttccttctgtct-ctccctccctctctttcttctctgtttccattcaagctcctactctccctccttctcgttccttttcccttcccttttcttcctcttccttttccttcttttct--tttcactccttcctttcttcctccttctttc
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29216688 176 -  71996105 attttagttt------------------------------------------------------cttttattttttgttccttccg-tttctccttccttcagtcc-ctccctccctctctttcttctctatttccattcaacctctcaccct-cctccttttca----------ctccgctttccttcccctt-cccttccttcttttcttctttcactccttcctccattcctccttctttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      23516 177 +    273075 attttagttt------------------------------------------------------cttttattttttgttccttctg-tttctccttctttctgtcc-ctccctccctctctttcttctctatttccattcaacctctcgccct-cctccttttca----------ttctgctttccttccccttccccttccttcttttcttctttcactcctttctccattcctccttctttc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2941506 177 -   3067355 ATTTTAGTTT------------------------------------------------------ATTTTCtcctttgttccttccc-tttctccttccttctgtcc-ctccctccctctctttcttctctatttccattcaacctctcgccct-cctccttttca----------ttccgctttccttccccttccccttccttcttttcctctttcactccttcctccattcctccttctttc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           121618 235 +    187130 attttatttttatttttttttaattgcattttaggttttggggtactattctttattttagtttcttctcttctttgttcctttccttttttccttccttcttgtctctgcctccctctctttgttttctattttcattcaaactctcgccctcccttttcatccctccActtt-cttccctttccttccttttccccttccttcttttcttctttcactcc--------ttcctccttctttc
i saiBol1.JH378364         C 0 C 0
s aotNan1.NW_018496904v1     135768 184 -    383796 ATTTTAGCTT-------------------------------------------------------TTTTCTCCTCTGTTCATttcc-tttctccttccttctcttc-ctccctccctctctttcttctctatttccattcaaactcttaccctccctccttctcaccccctttt-ccttcccattttccc--atcttcttcctttttttcttctttcactttttcctctattcctccttctttc
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e cerAty1.NW_012002711v1     728397 1214 +    766320 I

a score=1064673.000000
s hg38.chr6_GL000254v2_alt  1081667 243 +   4827813 cctcccttcctcca-ttttttccttttTATTATGAAAATTTCCTAACATATAAAATAACCCTATGTGATTGTGCTATAAGTAAGCATTTTCTGAATCTGTATGTCAAAAGTACAATGCCACGGTATATGAGAAACAAGTAAACAACAGAAAGTTATTGACAGAATCTAAATAAAAATGCCTGCTATAATTCTGCAGCCAAGACAGCGGCTTTCAACTCAATTCCTTCAACTCAA-TGTTTTCAGA
s panTro5.chr6             30047322 243 + 175400573 cctcccttcctcca-ttttttcctttttattATGAAAATTTCCTAACATATAAAATAACCCTATGTGATTGTGCTATAAGTAAGCATTTTCTGAATCTGTATGTCAAAAGTACAATGCCACGGTATATGAGAAACAAGTAAACAACAGAAAGTTATTGACAGAATCTAAATAAAAATGCCTGCTATAATTCTGCAGCCAAGACAGTGGCTTTCAACTCAATTCCTTCAACTCAG-TGTTTTCAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30277962 243 + 173848474 cctcccttcctcca-ttttttcctttttattATGAAAATTTCCTAACATATAAAATAACCCTATGTGATTGTGCTATAAGTAAGCATTTTCTGAATCTGTATGTCAAAAGTACAATGCCACGGTATATGAGAAACAAGTAAACAACAGAAAGTTATTGACAGAATCTAAATAAAAATGCCTGCTATAATTCTGCAGCCAAGACAGTGGCTTTCAACTCAATTCCTTCAACTCAG-TGTTTTCAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6086412 243 +   6154872 cctcccttcctcca-ttttttcctttttattATGAAAATTTCCTAACATATAAAATAACCCTATGTGATTGTGCTATAAGTAAGCATTTTCTGAATCTGTATGTCAAAAGTACAATGCCACGGTATATGAGAAACAAGTAAACAACAGAAAGTTATTGACAGAATCTAAATAAAAATGCCTGCTATAATTCTGCAGCCAAGACAGTGGCTTTCAACTCAATTCCTTCAACTCAG-TGTTTTCAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74778398 242 + 122973662 tttcccttcctCCATTTTTTTCCATTTTATTATGAAATTTTCCTAGCATATAAAATAACCCTATGTGATTGGGCTAGAAGTAAGCATTTTCTGAATCTATATGTCAAAAGTATAATGCCATGGTATATGAGAAACAAGTAACCAACAGGAAGTTATTAACAGAGTCTGAATAAAAGTCCCTGCTATAATTCTGCAGCCAAGACAGTGGCTTTTAACTCAATTCCTTCAACTC---TGTTTTCAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30536650 242 + 172585720 cctcccttcctcca-ttttttcctttttcttATGAAATTTTCCTAA-ATATAAAATAACCCTGTGTGATTGTGCTATAAGTAAGCATTTTCTGAATCTATATGCCAAAAGTATAATGCCACGGTATATAAGAAACAAGTAAACAACAGGAAGTTATTCACAGAGTCTGAATGAAAATGCCTGCTGTAATTCTACTGCCAAGACAGTGACTTTTAACTCAATTCCTTTGATGCAG-TGTTTTCAGA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     149235 244 +   1495729 actcccttcctcca-ttttttacttTTTATTATGAAATCTTCCTAGCATATAAAAAAACCCTACATGATTGTGCTATCAGTAAGCATTTTCTGAATCTATATGTCAAAAGTATACTGCCACAGCATGTGAGAAACAAGTAACCAACAGGAAGTTATTAACAGAGTCTGAATAAAACTCCCTGCTATGATTCTGCAGCCAAGACAGTGGCTTTTAACTCAATTCCTTCAACTCTGTTGTTTTCAAA
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29216864 243 -  71996105 cctcccttcctcca-ttttttccttTTTATTATGAAATTTTCCTAACATATAAAGTAACCCTATGTGTTTGGGTTATAAGTAAGCATTTTCTGGATCTATATGTCAAAAGTATAATGCCATGGTATATGAGAAACAAGTAAACAGCAGGAAGTTATTAACAGAATCTAAACAAAAATGCCTGCAATAATTCTGCAGCCAAGACAGTGGCTTTCAATTCAATTCCTTCAACTCAG-TGTTTGTAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      23693 243 +    273075 cctcccttcctcca-ttttttcctttttattATGAAATTTTCCTAACATATAAAGTAATCCTATGTGTTTGGGCTATAAGTAAGCATTTTCTGGATCTATATGTCAAAAGTATAATGCCATGGTATATGAGAAACAAGTAAACAACACGAAGTTATTAACAGAATCTAAACAAAAATGCCTGCAATAATTCTGCAGCCAAGACAGTGGCTTTCAATTCAATTCCTTCAACTCAG-TGTTTTTAGA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2941683 243 -   3067355 cctcccttcctcca-ttttttccttTTTATTATGAAATTTTCCTAGCATATAAAGTAACCCTATGTGTTTGGGCTATAAGTAAGCATTTTCTGGATCTATATGTCAAAAGTATAATGCCATGGTATATGAGAAACAAGTAAACAACAGGAAGTTATTAACAGAATCTAAACAAAAATGCCTGCAATAATTCTGCAGCCAAGACAGTGGCTTTCAACTCAATTCCTTCAACTCAG-TGTTTTTAGA
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018496904v1     135952 244 -    383796 cctccCTTTCCCCATTTTTTTGCTTTTTATTATAAAATTTTTCTAACATATAAAACAACCCTATTTGATTGTGCCATAAATAAGCATTTTCTGAATCTATATTTCAAAACCGTAATGCCATGGTATATGAGAAACAAGTAAACAACAGGAAGTTAATAACAGAGTCTGAATAAAAATTCCTGCTATAAACCTGCAGCCAAGACACTGGCTTTTAACTCAATTCCTTCAACTCAG-TGTTTTCAGA
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e saiBol1.JH378364           121853   0 +    187130 C
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e cerAty1.NW_012002711v1     728397 1214 +    766320 I

a score=69135.000000
s hg38.chr6_GL000254v2_alt  1081910 12 +   4827813 ACACATCATCAA
s panTro5.chr6             30047565 12 + 175400573 ACACATCATCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30278205 12 + 173848474 ACACATCATCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6086655 12 +   6154872 ACACATCATCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74778640 12 + 122973662 ACATATCATCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30536892 12 + 172585720 ACACATCATCAA
i rheMac8.chr4             C 0 I 468
s macNem1.NW_012012100v1     149479 12 +   1495729 ACATGTCGTCAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     729611 12 +    766320 ACACATCATCAA
i cerAty1.NW_012002711v1   I 1214 C 0
s chlSab2.chr17            29217107 12 -  71996105 ACACATCATCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      23936 12 +    273075 ACACATCATCAA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2941926 12 -   3067355 ACACATCATCAA
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018496904v1     136196 12 -    383796 ACACATCATCAA
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12            71532675  0 -  72498081 I
e saiBol1.JH378364           121853  0 +    187130 C
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I

a score=612696.000000
s hg38.chr6_GL000254v2_alt  1081922 143 +   4827813 CATCAAGTATTACGCACTTATTTCAAAAGTTTAAgccaggcgtggtggttcacgcctgtaatcccagcactttgggaggctgaggtgggtggaccacctgaggtcaggagttcaagaccagtctggctaacatggtaaaaccc
s panTro5.chr6             30047577 143 + 175400573 CATCAAGTATTACACACTTATTTCAAAAGTTTAggccaggcatggtggttcacgcctgtaatcccagcactttgggaggctgaggtgggtggaccacctgaggtcaggagttcaagaccagtctggctaacatggtaaaaccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30278217 143 + 173848474 CATCAAGTATTACACACTTATTTCAAAAGTTTAggccaggcgtggtggttcacgcctgtaatcccagcactttgggaggctgaggtgggtggaccacctgaggtcaggagttcaagaccagtctggctaacatggtaaaaccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6086667 143 +   6154872 CATCAAGTATTACACACTTATTTCAAAAGTTTAggccaggcttggtggttcacgcctgtaatcccagcactttgggaggctgaggtgggtggaccacctgaggtcaggagttcaagaccagtcttgctaacatggtaaaaccc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74778652 143 + 122973662 CATCAAGTATTACACATTTATTGTAAAAGTTTAggccaggcatggtggctcacacctgtaatcccagcactttgggaggctgaagtgggtggatcacctgagttcaggagtttgagaccagcctggccaacatggtgaaaccc
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1     149491 141 +   1495729 TATCAAGTATTACACATTTATTTTAAAAGTTTAggccaggcacagtggctcatgcttgtaatcctagcactttgggaggccaaggtgggcagatcaccag--gtcaggagatcgagaccatcctagctaacacagtgaaaccc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     729623 143 +    766320 CATCAAGTATTACACATTTAATTCAAAAGTTTAggccaggcgtggtggttcacgcctgtaatcccagcactttgggaagccgaggtgggtggaccacctgcagtcaggatttcaagaccagtctggctaacatggtgaaaccc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29217119 143 -  71996105 CATCAAGTATTACACATTTAATTCAAAAGTTTAggccaggtatggtggttcacgcctgtaatcccagcactttgggaagccgaggcgggtggaccacctgcagtcaggaattcaagaccagtctggctaacatggtgaaaccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      23948 143 +    273075 CATCAAGTATTACACATTTAATTCAAAAGTTTAggccaggcgtggtggatcacgcctgtaatcccagcactttgggaagctgaagtcggtggaccacctgcggtcaggagttcaagaccagtctggctaacatggtgaaaccc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2941938 143 -   3067355 CATCAAGTATTATACATTTAATTCAAAAGTTTAggccaggcatggtggttcatgcttgtaatcccagcactttgggaagccaaggcgggtggaccacctgcagccaggagttcaagaccagtctggctaacatggtgaaaccc
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018496904v1     136208 142 -    383796 CATCAAGTATTGCTCATTTATTT-AAGAGTTTAggctgggtgtggtggctcatgcctgtaatcctagcactttgggaggtcaagtcatgcagatcatcagaggtcaggagtttaggaccagtctagccaacatggtgaaaccc
i aotNan1.NW_018496904v1   C 0 I 44166
e canFam3.chr12            71532675   0 -  72498081 I
e saiBol1.JH378364           121853   0 +    187130 C
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e rheMac8.chr4             30536904 468 + 172585720 I

a score=3600.000000
s hg38.chr6_GL000254v2_alt  1082065 1 +   4827813 c
s panTro5.chr6             30047720 1 + 175400573 c
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30278360 1 + 173848474 c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6086810 1 +   6154872 c
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012012100v1     149632 1 +   1495729 c
i macNem1.NW_012012100v1   C 0 I 222
s cerAty1.NW_012002711v1     729766 1 +    766320 c
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29217262 1 -  71996105 c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      24091 1 +    273075 c
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2942081 1 -   3067355 c
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr12            71532675 0 -  72498081 I
e saiBol1.JH378364           121853 0 +    187130 C
e aotNan1.NW_018496904v1     136350 44166 -    383796 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e rheMac8.chr4             30536904 468 + 172585720 I
e nomLeu3.chr1a            74778795 0 + 122973662 C

a score=399145.000000
s hg38.chr6_GL000254v2_alt  1082066 165 +   4827813 atTGTCGCAATcggttactatgggatataatgaagggggatgaacacagaaataaagacaaagacaaaaagatctgttctaaaagaaggggtcgggggcttcttgcttctagtgattccttctggcagcaaactcagtttgtcagtttgccaacatcctgctttc
s panTro5.chr6             30047721 165 + 175400573 atTGTCGCAATcggttactataggatataatgaagggggatgaacacagaaataaagacaaagacaaaaagatctgttctaaaagaaggggtcgggggcttcttgcttctagtgattccttctggcagcaaactcagtttgtcagtttgccaacatcctgctttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30278361 165 + 173848474 atTGTCGCAATcggttactataggatataatgaagggggatgaacacagaaataaagacaaagacaaaaagatctgttctaaaagaaggggtcgggggcttcttgcttctagtgattccttctggcagcaaactcagtttgtcagtttgccaacatcctgctttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6086811 164 +   6154872 atTGTCGCAATcggtcactatgggatataatgaa-ggggatgaacacagaaataaagacaaagacaaaaagatctgttctaaaagaaggggtcgggggcttcttgcttctagtgattccttctggcagcaaactcagtttgtcagtttgccaacatcctgctttc
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     729767 164 +    766320 atTGTTGCAATcggttactacgggatataatgaa-ggggatgaacacagaaataaagacaaagacaaaaagatctgttttgaaagaaggggttgggggcttcttgctactagtgattccttctggtggcaaatacagtttgtcagtttgccaacatcctgctttc
i cerAty1.NW_012002711v1   C 0 I 2489
s chlSab2.chr17            29217263 165 -  71996105 atTGTTGCAATcggttactacgggatataatgaagggggatgaacacagaaataaagacaaagacaaagagatctgttttgaaagaaggggttgggggcttcttgctactagtgattccttctggtggcaaatgcagtttgtcagtttgccaacatcctgctttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      24092 164 +    273075 atTGTTGCAATcggttactacgggatataatgaa-ggggacgaacacagaaataaagacaaagacaaaaagatctgttctgaaagaaggggtcgggggcttcttgctactagtgattccttctggtggcaaatacagtttgtcagtttgccaacatcctgctttc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2942082 164 -   3067355 gtTGTTGCAATcagttactacgggatataatgaa-ggggacgaacacagaaataaagacaaagacaaaaagatctgttctgaaagaaggggtcaggggcttcttgctactagtgattccttctggtggcaaacgcagtttgtcagtttgccaacatcctgctttc
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e saiBol1.JH378364           121853   0 +    187130 C
e aotNan1.NW_018496904v1     136350 44166 -    383796 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I
e rheMac8.chr4             30536904 468 + 172585720 I
e nomLeu3.chr1a            74778795   0 + 122973662 C

a score=156932.000000
s hg38.chr6_GL000254v2_alt  1082231 85 +   4827813 atgagaacagtttgctgtttgctcatatagcctccagtggtatactgagttgatcacgaccctcattctttcggcctccaaTacc
s panTro5.chr6             30047886 85 + 175400573 atgagaacagtttgctgtttgctcatatagcctccagtggtatactgagttgatcatgaccctcattctttcggcctccaaTacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30278526 85 + 173848474 atgagaacagtttgctgtttgctcatatagcctccagtggtatactgagttgatcatgaccctcattctttcggcctccaaTacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6086975 85 +   6154872 atgagaacagtttgctgtttgctcatatagcctccagtggtatactgagttgatcacggccctcattctttcggcctccaaTacc
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            29217428 85 -  71996105 atgagaacagtttgttgtttgctcatacagcctccagtggtatagtgagttgatcacgaccctcattctttcggcctccaacacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      24256 85 +    273075 atgagaacagtttgttgcttgctcatacagcctccagtggtatagtgagttgatcacgaccctcattctttcggcctccaacacc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2942246 85 -   3067355 atgagaatagtttgttgtttgttcatatagcctccagtggtatagtgagttgatcacgacccttattcttttggcctccaacacc
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr12            71532675  0 -  72498081 I
e saiBol1.JH378364           121853  0 +    187130 C
e aotNan1.NW_018496904v1     136350 44166 -    383796 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e cerAty1.NW_012002711v1     729931 2489 +    766320 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I
e rheMac8.chr4             30536904 468 + 172585720 I
e nomLeu3.chr1a            74778795  0 + 122973662 C

a score=1009026.000000
s hg38.chr6_GL000254v2_alt  1082316 474 +   4827813 ccgactctactaaaaatacaaaaattagctgggcgtggtggtgcatgcctgtaatcccaactactcgggaggctgaggcaggagaattgcttgaactgggaggtggaagttgcaatcagccaagatagcaccactgcagttcagcctgggcaac-agagcaagacttcgtctcaaaaataaa-taaataaataaataaataaataaataaataaataagtttaagttggcacaatcactttggaaatcatattattattatctagtatggttaaaggccatataacatatcatccaatcatcccactcctaatcatacactctgcgggctttcttgcctatgtgcccaggagacaggcacactaatgtttatggcaagaactggaatcagctacatatatatcaatagaaaactagtgcaattatggtataaccataaaatgtaaaccttcagcagtaaaaacgaatgaatgacag
s panTro5.chr6             30047971 458 + 175400573 ccgactctactaaaaatacaaaaattagctgggcgtggtggtgcatgcctgtaatcccaactactcgggaggctgaggcaggagaattgcttgaactgggaggtggaagttgcaatcagccaagatagcaccactgcagttcagcctgggcaac-agagcaagacttcgtcttaaaaataaa-taaataaataaataaataa----------------gtttaagttggcacaatcactttggaaatcatattattattatctagtatggttaaaggccatacaacatatcatccaaccatcccactcctaatcatacactctgtgggctttcttgcctatgtgcccaggagacatgcacactaatgtttatggcaagaactggaatcagctacatatatatcaatagaaaactagtgcaattatggtataaccataaaatgtaaaccttcagcagtaaaaacgaatgaatgacag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30278611 459 + 173848474 ccgactctactaaaaatacaaaaattagctgggcgtggtggtgcatgcctgtaatcccaactactcgggaggctgaggcaggagaattgcttgaactgggaggtggaagttgcaatcagccaagatagcaccactgcagttcagcctgggcaac-agagcaagacttcgtcttaaaaataaattaaataaataaataaaTAa----------------gtttaagttggcacaatcactttggaaatcatattattattatctagtatggttaaaggccatacaacatatcatccaaccatcccactcctaatcatacactctgtgggctttcttgcctatgtgcccaggagacatgcacactaatgtttatggcaagaactggaatcagctacatatatatcaatagaaaactagtgcaattatggtataaccataaaatgtaaaccttcagcagtaaaaacgaatgaatgacag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6087060 451 +   6154872 ccgactctaccaaaaatacaaaaattagctgggcgtggtggtgcatgcctgtaatcccaactactcgggaggctgaggcaggagaattgcttgaactgggaggtggaagttgcaatcagccaagatagcaccactgcagttcagcctgggcaac-agagcaagacttcgtctcaa--------aaaataaataaataaaTAa----------------gtttaagttggcacaatcactttggaaatcatattattattatctagtatggttaaagtccatacaacatatcatccaatcatcccactcctaatcatacactctgcgggctttcttgcctatgtgcccaggagacatgcacactaatgtttatggcaaaaactggaatcagctacatatatatcaatagaaaactagtgcaattatggtataaccataaaatgtaaaccttcagcagtaaaaatgaatgaatgacag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74778795 433 + 122973662 ccgtctctactaaaaatacaaaaattagccgggcgtggtggcgggtgccagtaatcccagctactggggaggctgaggcagaagaatcacttgaaacgggaagcagaagttgtagtgagatgagattgcaccactgcactccagcctgagcaac-a-aacaagactctgtctcaaaaaaaaa---------------aaaaa----------------gtttaagttggcacaatcactttggaaatcatattatcattatctagtatggttaaagtccatacaacatatcatccacccgtcccacccctaatcatacac----------ttcttgccaatgtgcccaggagacatgtacactaatgtttatggcaaaacctggaatcagccacttatacatcaataggaaatgagtgaaattgtggtataaccataaaatgtaaactttcatcagtgataataaattaatgacag
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            29217513 455 -  71996105 ccctctctactaaaaatgcaaaaattagctgggcgtggtggtgaatgcctgtaatcccaactacttgggaggctgaggcaggagaattgcttgaactgggaggaagaagttgcaatcagccgagatggcacgactgcacttcagcctgggcaacaagatcaagactttgtctcaaaaataaa-taaat----aaataaaTAT----------------gtttaagttggcacaatcactttggaaataatattattattatctagtatggttaaagtccatacaacatataatccaaccatcctactcctaatcatacactctgcgggctttcctgcctatgtgcccaggagacatgcacactaatgtttatggcaaaaactggaatcagctacatatacatcaatagaaaactagtgcaattatggtataaccataaaatgtaaaccttcagcagtaaaaatgagtgaatgacag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      24341 446 +    273075 ccgtctctactaaaaatgcaaaaattagctgggcatggtggtaaatgcctgtaatcccaactactctggaggctgaggcaggagaattgcttgaactgggaggaagaagttgcaatcagccgagatggcacaactgcacttcagcctgggtaac-agagcaagactttgtctcaaaaataaa-taaat----aaataaaTAa----------------gtataagttggcacaatcactttggaactaatattattattatctagtatggttaaagtccatacaacatataatcca--------actcctaatcatacactctgcgggctttcctgcctatgtgcccaggagacatgcccactaatgtttatggcaaaaactagaatcagctacatatacatcaatagaaaactagtgcaatcatggtataatcataaaatgtaaaccttcagcagtaaaaatgagtgaaTGACAG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2942331 457 -   3067355 ccgtctctactaaaaatgcaaaaattagctgggcgtggtggtgaatgcctgtaatcccaactactctggaggctgaggcaggagaattgcttgaactgggaggaagaagttgcagtcagccgagatggcacgactgcacttcagcctgggtaac-agagcaagactttgtctcaaaaataaa-taaataaagaaataaaTAa----------------gtttaagttggcaaaatcactttggaactaatattattattatctagtatggttaaagtccatacaacatataatccaaccattccactcctaatcatacactctgcgggctttcctgcctatgtgcccaggagacatgcacactaatgtttatggcaaaaactagaatcagctacatatacatcaatagaaaactagtgcaattatggtat-accataaaatgtaaaccttcagcagtaaaaatgagtgaatcacag
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e saiBol1.JH378364           121853   0 +    187130 C
e aotNan1.NW_018496904v1     136350 44166 -    383796 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e cerAty1.NW_012002711v1     729931 2489 +    766320 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I
e rheMac8.chr4             30536904 468 + 172585720 I

a score=44227.000000
s hg38.chr6_GL000254v2_alt  1082790 12 +   4827813 cctcccacacca
s panTro5.chr6             30048429 12 + 175400573 cctcccacacca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30279070 12 + 173848474 cctcccacacca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6087511 12 +   6154872 cctcccacacca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74779228 12 + 122973662 ccttccacgcca
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            29217968 12 -  71996105 cctcccacacca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      24787 12 +    273075 CCTCTCACACCA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2942788 12 -   3067355 cctcccacacca
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           121853 12 +    187130 cctccCACGCCA
i saiBol1.JH378364         C 0 C 0
s aotNan1.NW_018496904v1     180516 12 -    383796 CCTCCCAAACAA
i aotNan1.NW_018496904v1   I 44166 C 0
e canFam3.chr12            71532675  0 -  72498081 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e cerAty1.NW_012002711v1     729931 2489 +    766320 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I
e rheMac8.chr4             30536904 468 + 172585720 I

a score=420948.000000
s hg38.chr6_GL000254v2_alt  1082802 100 +   4827813 CAGATAACTCCTATATGTAATGTGCATCATGGGAAAATAAATGCAGTAGGAATTTGCTGTACTGGAAGCTTAAAAACCATCAAAACTAA--CTAATATTTGG
s panTro5.chr6             30048441 100 + 175400573 CAGATAACTCCTATATGTAATGTGCATCATGGGAAAATAAATGCAGTAGGAATTTGCTGTACTGGAAGCTTAAAAACCATCAAAACTAA--CTAATATTTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30279082 100 + 173848474 CAGATAACTCCTATATGTAATGTGCATCATGGGAAAATAAATGCAGTAGGAATTTGCTGTACTGGAAGCTTAAAAACCATCAAAACTAA--CTAATATTTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6087523 100 +   6154872 CAGATAACTCCTATATGTAATGTGCATCATGGGAAAATAAATGCAGTAGGAATTTGCTGTACTGGAAGCTTAAAAACCATCAAAACTAA--CTAATATTTGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74779240 101 + 122973662 cagacaactcctatacgtaatgtgcatcgtggg-aaatagatgcagtaggaatttgtagtacaggaagcttaaaaaccagcaaaaaaaaccctaatatttgg
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002711v1     732420 100 +    766320 CAGATAACTCCTATACGTAATGTGCAtcatgggaaaataaatgcagtaggaatttgctgtactggaagcttaaaaaccagcaaaactaa--ctaatatctgg
i cerAty1.NW_012002711v1   I 2489 C 0
s chlSab2.chr17            29217980  96 -  71996105 cagataactcctatatgtaatgtgcatcatgggaaaataaatgcagtaggaatttgctgtactggaagcttaaaaaccagcaa----aa--ctaatatttgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      24799 100 +    273075 CAGATAACTCCTATATGTAATGTGCAtcatgggaaaataaatgcagtaggaatttgctgtactggaagcttaaaaaccagcaaaactaa--ctaatatttgg
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2942800  96 -   3067355 cagataactcctatacgtaatgtgcatcacaggaaaataaatgcagtaggaatttgctgtactggaagcttaaaaaccagcaa----aa--ctaatatttgg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           121865 100 +    187130 CAGATAACTCCAATACACAATATGCATCATGAGAAAATAAATGCATAATTTATTTGCTGTTCAGGAAGCATAAAAGCCAGAAAAACTAA--CTAATATTTGG
i saiBol1.JH378364         C 0 C 0
s aotNan1.NW_018496904v1     180528  99 -    383796 CTGATAACTCCTATACATAATGTGCATTATGGGAAAATAAATGCAGAAGGAATTTGCTGTACAGGAAGTG-AAAAGCCAGCAAAACTAA--CTAATATTTGG
i aotNan1.NW_018496904v1   C 0 T 43637
e canFam3.chr12            71532675   0 -  72498081 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I
e rheMac8.chr4             30536904 468 + 172585720 I

a score=108485.000000
s hg38.chr6_GL000254v2_alt  1082902 39 +   4827813 ATTGGGGATATATC---TATACTTAT---TACACAAATCCTTAAA---------
s panTro5.chr6             30048541 39 + 175400573 ATTGGGGATATATC---TATACTTAT---TACACAAATCCTTAAA---------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30279182 39 + 173848474 ATTGGGGATATATC---TATACTTAT---TACACAAATCCTTAAA---------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6087623 39 +   6154872 ATTGGGGATATATC---TATACTTAT---TACACAAATCCTTAAA---------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74779341 33 + 122973662 tttgggga---------tataattat---tgcacaaattgataaa---------
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002711v1     732520 39 +    766320 attggggatatatc---tatacttat---tacacaaatctttaaa---------
i cerAty1.NW_012002711v1   C 0 I 5
s chlSab2.chr17            29218076 39 -  71996105 attggggatatatc---tatacttat---tacacaaatctttaaa---------
i chlSab2.chr17            C 0 I 5
s manLeu1.NW_012101121v1      24899 39 +    273075 attggggatatatc---tatacttat---tacacaaatctttaaa---------
i manLeu1.NW_012101121v1   C 0 I 5
s colAng1.NW_012115566v1    2942896 39 -   3067355 attgaggatatatc---tatacttat---tacacaaatctttaaa---------
i colAng1.NW_012115566v1   C 0 I 5
s saiBol1.JH378364           121965 53 +    187130 -TTTGatatatatttgatatatatatagatacacatatatttgatatatatatC
i saiBol1.JH378364         C 0 C 0
e canFam3.chr12            71532675  0 -  72498081 I
e aotNan1.NW_018496904v1     180627 43637 -    383796 T
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I
e rheMac8.chr4             30536904 468 + 172585720 I

a score=7766.000000
s hg38.chr6_GL000254v2_alt  1082941 27 +   4827813 GAAACTCTATA-------------ATTTCTTtatagatat
s panTro5.chr6             30048580 27 + 175400573 GAAACTCTATA-------------ATTTCTTtatagatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30279221 27 + 173848474 GAAACTCTATA-------------ATTTCTTtatagatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6087662 25 +   6154872 GAAACTC--TA-------------ATTTCTTtatagatat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74779374  4 + 122973662 aaaa------------------------------------
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378364           122018 40 +    187130 AAAACCAAATATTAGTTTTCCTGCatatatatatagatat
i saiBol1.JH378364         C 0 I 89
e canFam3.chr12            71532675  0 -  72498081 I
e aotNan1.NW_018496904v1     180627 43637 -    383796 T
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e colAng1.NW_012115566v1    2942935  5 -   3067355 I
e manLeu1.NW_012101121v1      24938  5 +    273075 I
e chlSab2.chr17            29218115  5 -  71996105 I
e cerAty1.NW_012002711v1     732559  5 +    766320 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I
e rheMac8.chr4             30536904 468 + 172585720 I

a score=39294.000000
s hg38.chr6_GL000254v2_alt  1082968 88 +   4827813 tatgaaaacagcaaggtactggtacaaaaacaggcacatagaccaatggaacagaacagagaactcagaaataagaccacacatctaa
s panTro5.chr6             30048607 88 + 175400573 tatgaaaacagcaaggtactggtacaaaaacaggcacatagaccaatggaacagaacagagaactcagaaataagaccacacatctaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30279248 88 + 173848474 tatgaaaacagcaaggtactggtacaaaaacaggcacatagaccaatggaacagaacagagaactcagaaataagaccacacatctaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6087687 88 +   6154872 tatgaaaacagcaaggtgctggtacaaaaacaggcacatagaccaatggaacagaacagagaactcagaaataagaccacacatctaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74779378  4 + 122973662 --------------------------------------------------------------------aaat----------------
i nomLeu3.chr1a            C 0 C 0
e canFam3.chr12            71532675  0 -  72498081 I
e saiBol1.JH378364           122058 89 +    187130 I
e aotNan1.NW_018496904v1     180627 43637 -    383796 T
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e colAng1.NW_012115566v1    2942935  5 -   3067355 I
e manLeu1.NW_012101121v1      24938  5 +    273075 I
e chlSab2.chr17            29218115  5 -  71996105 I
e cerAty1.NW_012002711v1     732559  5 +    766320 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I
e rheMac8.chr4             30536904 468 + 172585720 I

a score=5576.000000
s hg38.chr6_GL000254v2_alt  1083056 2 +   4827813 at
s panTro5.chr6             30048695 2 + 175400573 at
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30279336 2 + 173848474 at
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6087775 2 +   6154872 at
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74779382 2 + 122973662 ac
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002711v1     732564 2 +    766320 at
i cerAty1.NW_012002711v1   I 5 C 0
s chlSab2.chr17            29218120 2 -  71996105 at
i chlSab2.chr17            I 5 C 0
s manLeu1.NW_012101121v1      24943 2 +    273075 at
i manLeu1.NW_012101121v1   I 5 C 0
s colAng1.NW_012115566v1    2942940 2 -   3067355 at
i colAng1.NW_012115566v1   I 5 C 0
e canFam3.chr12            71532675 0 -  72498081 I
e saiBol1.JH378364           122058 89 +    187130 I
e aotNan1.NW_018496904v1     180627 43637 -    383796 T
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I
e rheMac8.chr4             30536904 468 + 172585720 I

a score=535404.000000
s hg38.chr6_GL000254v2_alt  1083058 106 +   4827813 aaagGAATAATAATCACAAGACTCAGGATGGAGTCTCCTTTTGGGGGATGTGAATGGGCAGCAGCCCAGGGTAG-TTTACAGGTTCTGTGTTTTACAACAGTGCTGG
s panTro5.chr6             30048697 106 + 175400573 aaagGAATAATAATCACAAGACTCAGGATGGAGTCTCCTTTTGGGGGATGTGAATGGGCAGCAGCCCAGGGTAG-TTTACAGGTTCTGTGTTTTACAACAGTGCTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30279338 106 + 173848474 aaaggaataataatcacaagactcaggatggagtctccttctgggggATGTGAATGGGCAGCAGCCCAGGGTAG-TTTACAGGTTCTGTGTTTTACAACAGTGCTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6087777 106 +   6154872 aaagGAATAATAATCACAAGACTCAGGATGGAGTCTCCTTTTGGGGGATGTGAATGGGCAGCAGCCCAGGGTAG-TTTACAGGTTCTGTGTTTTACAACAGTGCTGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74779384 106 + 122973662 aaaggaataataatcacaagactcaggacagagtctccttctgggTGATGTGAATGGGCAGCAGACCAGCGGAGCTTTACAGGTTC-ATGTTTTACACCAGTGTTGG
i nomLeu3.chr1a            C 0 I 23
s rheMac8.chr4             30537372 105 + 172585720 aaaggaataataatcac-aggttcaggatggagtctccttctg-gggaagtgaATGGGCAGCAGCCCAGGGGAGTTTTACAGGTTCTGTGTTTTACACCAGTGCTGG
i rheMac8.chr4             I 468 T 59181
s cerAty1.NW_012002711v1     732566 106 +    766320 aaagaaaaaataatcacaagactcaggatggagtctccttttgtgggATGTGAATGGGCAGCAGCCCAGGGTAG-TTTACAGGTTCTGTGTTTTACAACAGTGTTGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29218122 106 -  71996105 aaaggaaaaataatcacaagactcaggatggagtctccttttgggggATGTGAATGGACAGCAGCCCAGGGTAG-TTTACAGGTTCTGTGTTTTACAACAGTGCTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      24945 106 +    273075 aaaggaaaaataatcacaagactcaggatggagtctccttttgggggatgggaATGGGCAGCAGCCCAGGGTAG-TTTACAGGTTCTGTGTTTTACAACAGTGCTGG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2942942 106 -   3067355 aaaggaaaaataatcacaagactcaggatggagtctccttttgagggATGTGAATGGGCAGCAGCCCAGGGTAG-TTTACAGGTTCTGTGTTTTACAACAGTGTTGG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           122147 101 +    187130 AAAGTAGTCATAATCACAAGAATCAGGATGGAGTTTCCTTTTGGGGAATCGGAATGCACAGCAGACCAGGGTAGATTTATAGGTTCTGTGTTTTACCCCAG------
i saiBol1.JH378364         I 89 C 0
s aotNan1.NW_018496904v1     136990 106 -    383796 aaaggaataataaccacaagactcattatggagtctccttctgggg-atgggaATGGGCAGCAGCCCAGGGTAGCTTTACAGGTTCTGTGTTTTACAACAGTGCTGG
i aotNan1.NW_018496904v1   T 43637 I 43954
e canFam3.chr12            71532675   0 -  72498081 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I

a score=80657.000000
s hg38.chr6_GL000254v2_alt  1083164 42 +   4827813 CTAAAGTCCAAACAACATATCATCCATTCCCTTTTAAAATGG
s panTro5.chr6             30048803 42 + 175400573 CTAAAGTCCAAACAACATATCATCCATTCCCTTTTAAAATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30279444 42 + 173848474 CTAAAGTCCAAACAACATATCATCCATTCCCTTTTAAAATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6087883 42 +   6154872 CTAAAGTCCAAACAACATATCATCCATTCCCTTTTAAAATGG
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     732672 39 +    766320 CTAAAGTCCATACAACAT---ATCCATTCCCTTTTAAAAGGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29218228 39 -  71996105 CTCAAGTCCATACAACAT---ATCCATTCCCTTTTAAAAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      25051 39 +    273075 CTAAAGTCCATACAACAC---ATCCATTCCCTTTTAAAAGGG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2943048 39 -   3067355 CTAAAGTCCATACAACAT---ATCCATTCCCTTTTAAAAGGG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           122248  7 +    187130 ---------------------ATCTA--------------GG
i saiBol1.JH378364         C 0 C 0
e canFam3.chr12            71532675  0 -  72498081 I
e aotNan1.NW_018496904v1     137096 43954 -    383796 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I
e rheMac8.chr4             30537477 59181 + 172585720 T
e nomLeu3.chr1a            74779490 23 + 122973662 I

a score=235583.000000
s hg38.chr6_GL000254v2_alt  1083206 77 +   4827813 AACTTTTAAAATAAATGTGTAATACTTGATGTTGATGATGTGTTCTGAAAACATTGAGTTGAAAGAATTGACTTAAA
s panTro5.chr6             30048845 77 + 175400573 AACTTTTAAAATAAATGTGTAATACTTGATGTTGATGATGTGTTCTGAAAACATTGAGTTGAAAGAATTGACTTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30279486 77 + 173848474 AACTTTTAAAATAAATGTGTAATACTTGATGTTGATGATGTGTTCTGAAAACATTGAGTTGAAAGAATTGACTTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6087925 77 +   6154872 AACTTTTAAAATAAATGTGTAATACTTGATGTTGATGATGTGTTCTGAAAACACTGAGTTGAAAGAATTGACTTAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            48194979 75 - 122973662 AACTTTTACAATAAATGTGTAATACTTGATGTTGATGATATGTTCTGAAAACA--GAGTTGAAGGAATTGAGTTAAA
i nomLeu3.chr1a            n 23 n 23
s cerAty1.NW_012002711v1     732711 77 +    766320 AACTTTTAAAACAAATTTGTAATACTTGATGTTGATGATGTGTTCTGAAAACATTGAGTTGAAAGAATTGACTTAAA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29218267 77 -  71996105 AACTTTTAAAATAAATTTGTAATACTTGATGTTGATGATGTGTTCTGAAAACATTGAGTTGAAAGAATTGACTTAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      25090 77 +    273075 AACTTTTAAAATAAATTTGTAATACTTGATGTTGATGATGTGTTCTGAAAACATTGAGTTGAAAGAATTGACTTAAA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2943087 77 -   3067355 AACTTTTAAAATAAATTTGTAATACTTGATGTTGATGATGTGTTCTGAAAACATTGAGTTGAAAGAATTGACTTAAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           122255 37 +    187130 CACCTTGATAGT----------TACTTGATTATAA-------TTCTGTAAACAT-----------------------
i saiBol1.JH378364         C 0 C 0
e canFam3.chr12            71532675  0 -  72498081 I
e aotNan1.NW_018496904v1     137096 43954 -    383796 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I
e rheMac8.chr4             30537477 59181 + 172585720 T

a score=10696.000000
s hg38.chr6_GL000254v2_alt  1083283 4 +   4827813 TTCC
s panTro5.chr6             30048922 4 + 175400573 TTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30279563 4 + 173848474 TTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6088002 4 +   6154872 TTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     732788 4 +    766320 TTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29218344 4 -  71996105 TTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      25167 4 +    273075 TTCC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2943164 4 -   3067355 TTCC
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr12            71532675 0 -  72498081 I
e saiBol1.JH378364           122292 0 +    187130 C
e aotNan1.NW_018496904v1     137096 43954 -    383796 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I
e rheMac8.chr4             30537477 59181 + 172585720 T
e nomLeu3.chr1a            48195054 23 - 122973662 I

a score=30366.000000
s hg38.chr6_GL000254v2_alt  1083287 8 +   4827813 TAATTCCT
s panTro5.chr6             30048926 8 + 175400573 TAATTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30279567 8 + 173848474 TAATTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6088006 8 +   6154872 TAATTCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74779513 8 + 122973662 TAATTTGT
i nomLeu3.chr1a            I 23 C 0
s cerAty1.NW_012002711v1     732792 8 +    766320 TAATTCCT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29218348 8 -  71996105 TAATTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      25171 8 +    273075 TAATTCCT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2943168 8 -   3067355 TAATTCCT
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018496904v1     181050 8 -    383796 TAATTCCT
i aotNan1.NW_018496904v1   I 43954 C 0
e canFam3.chr12            71532675 0 -  72498081 I
e saiBol1.JH378364           122292 0 +    187130 C
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I
e rheMac8.chr4             30537477 59181 + 172585720 T

a score=697953.000000
s hg38.chr6_GL000254v2_alt  1083295 138 +   4827813 TAAACAGATTTTTTCAAAGTAAAATATGCTTGG-tttttataaaaatgaaagagaaaagaataccaaagttcattgcaagcatccttaacaagaactacttacattggaacaaaaccacacagaattgtaaggagccat
s panTro5.chr6             30048934 138 + 175400573 TAAACAGATTTTTTCAAAGTAAAATATGCTTGG-tttttataaaaatgaaagagaaaagaataccaaagttcattgcaagcatccttaacaagaactacttacattggaacaaaaccacatagaattgtaaggagccat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30279575 138 + 173848474 TAAACAGATTTTTTCAAAGTAAAATATGCTTGG-tttttataaaaatgaaagagaaaagaataccaaagttcattgcaagcatccttaacaagaactacttacattggaacaaaaccacatagaattgtaaggagccat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6088014 138 +   6154872 TAAACAGATTTTTTCAAAGTAAAATATGCTTGG-tttttataaaaatgaaagagaaaagaataccaaagttcattgcaagcatccttaacaagaactacttacattggaacaaaaccacacagaattgtaaggagccat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74779521 138 + 122973662 CAAACAGAGTTTTTCCAATTAAAATATAGCTGG-tttttataaaaatgaaagagaaaagaattccaaagttcattgcaaggatccttaacaagaactacttacgttggaaggaaaccactgagaattataaggagccat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30478296 130 + 172585720 TAAATAGAGTTTTCCAAATTAAAGTATACCTGG-TTTTTATAgaaatgaaagagaaaagaatttcaaaattcactacaagaatccttaacaagaactacttacatttgaagaaaaccacacagaatcatac--------
i rheMac8.chr4             T 59181 T 94947
s cerAty1.NW_012002711v1     732800 139 +    766320 TAAACAGAGTTTTTCCAATTAAAATATACCTGGTtttttataaaaatgaaagagaaaagaataccaaagttcattgcaagcatccttaacaagaactacttacactggaagaaaacgacagagaattgtaaggagccat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29218356 138 -  71996105 TAAACAGAGTTTTTCAAATTAAAATATACCTGa-tttttataaaaatgaaagagaaaagaataccaaagttcattgcaagcatccttaacaagaactacttacactggaagaaaatgacagagaattgtaaggagccat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      25179 138 +    273075 TAAACAGAGTTTTTCAAATTAAAATATACCTGa-tttttataaaaatgaaagagaaaagaataccaaagttcatggcaagcatccttaacaagaactacttacactggaagaaaacgacagagaattgtaaggagccat
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2943176 138 -   3067355 TAAACAGAGTTTTTCAAATTAAAATATACCTGG-tttttataaaaatgaaagagaaaagaataccaaaattcattgcaagcatccttaacaagaactacttacactggaagaaaacgacagagaattgtaaggagccat
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           122292 131 +    187130 -------AATTTTTCAAATTAACGTATGCCTGG-TTTTTGTAGAAAGAAAAGAGAAAAGAATACCAAAGTTCATTGCAAGGATACTTAAGAATAATTACTTACATTGGAAGAAAACCACAGAGAATTGTAAGGAGCCAT
i saiBol1.JH378364         C 0 C 0
s aotNan1.NW_018496904v1     181058 138 -    383796 TAAACAGAGTTTTTCAAATTAAAATATACCTGG-TTTTTGTAgaaaggaaagagaaaagaatatcaaagttcactgcaagaatccttaacaagaactacttacattggaagaaaaccacagagaattgtaaggagccat
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I

a score=1550961.000000
s hg38.chr6_GL000254v2_alt  1083433 300 +   4827813 gtgacagagaggaccacgaggccatgaaaatggctttggctacaaataggtcatttgatccttggctcactggcatctctgtagattttc-atgtatacaatcttcaatctgatgtgcaaggtaattccatcttgcaaaggatt--tgatgttacattctaccacacataccactgaattaaacttttacagaattggaaatgcacatcattgatcaaaataaatgaaacaagaaaagagtagaaaggaataaccagtgacggaatagc-aatatgaatagaaaacacaataggactgcgaaaa
s panTro5.chr6             30049072 300 + 175400573 gtgacagagaggaccacgaggccatgaaaatggctttggctacaaataggtcatttgatccttgactcactggcatctctgtagattttc-atgtatacaatcttcaatctgatgtgcaaggtaattccatcttgcaaaggatt--tgatgttacattctaccacacataccactgaattaaacttttacagaattggaaatgcacatcattgatcaaaataaatgaaacaagaaaagagtagaaaggaataaccagtgatggaatagc-aatatgaatagaaaacacaataggactgcgaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30279713 300 + 173848474 gtgacagagaggaccacgaggccatgaaaatggctttggctacaaataggtcatttgatccttgactcactggcatctctgtagattttc-atgtatacaatcttcaatctgatgtgcaaggtaattccatcttgcaaaggatt--tgatgttacattctaccacacataccactgaattaaacttttacagaattggaaatgcacatcattgatcaaaataaatgaaacaagaaaagagtagaaaggaataaccagtgatggaatagc-aatatgaatagaaaacacaataggactgcgaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6088152 299 +   6154872 gtgacagagaggacca-gatgccatgaaaatggctttggctacaaataggtcatttgatccttggctcactggcatctctgtagattttc-atgtatacaatcttcaatctgatgtgcaaggtaattccatcttgcaaaggatt--tgatgttacattctaccacacataccactgaattaaacttttacagaattggaaatgcacatcattgatcaaaataaatgaaacaagaaaagagtagaaaggaataaccagtgatggaatagc-aatatgaataaaaaacacaataggactgcgaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74779659 301 + 122973662 gtgacagagaggaccaggatgccatgaaagtggccttggctaataatagatcatttgatccttggcttactgacatctctctagattttc-aagtatataatgtttaatctgattagcaaggtaattccatcttgcaaaggatttatgacgttacattttatcacatgtacaactgaattaaacttttacagaattggaaatgcacatcattgatcaaaatgaaggaaacaag--aagagtagaaagtaataaccagtgatggaatagcaaatatgaatggaaaacacaataggactgcaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30383479 299 + 172585720 GTGACAGAGAGGACCAGCGTGCCATGAAAATGG-CGtggctacaaataggtcatttgatccttgg-tcactggcatctctctagatttttgaagtatacaatcttcaatctgatatgcaaggtaattccatcttgcaaagggtt--tgctgttacattttaccacacatacaactgagttaaacttttacagaattggaaatgcacatcattgatcaaaataaatgaaacaagaaaagagtagaaaggaataaccagtgatggaatagc-aatatgaatagaaaacgcaataggactgctaaaa
i rheMac8.chr4             T 94947 C 0
s cerAty1.NW_012002711v1     732939 301 +    766320 gtgacagagaggaccagcgtgccatgaaaatggccttggctacaaataggtcatttgatccttggctcactggcatctctctagatttttgaagtatacaatcttcaatctgatatgcaaggtaattccatcttgcaaaggatt--tggtgttacattttaccacacatacaactgagttaaactattacagaattggaaatgcacatcattgatcaaaataaatgaaacaagaaaagagtagaaaggaataaccagtgatggaatagc-aatatgaatagaaaacgcaataggactgctaaaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29218494 296 -  71996105 gtgacagagaggaccagcgtgccatgaaaatggcattggctacaaataggccatttgatccttggctcactggcatctctctagatttttgaagtatacaatcttcaatctgatatgcaaggtaattccatcttgcaaaggatt--tggtgttacattttaccacacatacaactgaattaaacttttacagaattggaaatgcacatcattgatcaaaataaatgaaacaagaa-----tagaaaggaataaccagtgatggaatagc-aatatgaatagaaaacgcaataagactgctaaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      25317 301 +    273075 gtgacagagaggaccagcgtgccatcaaaatggccttggctacaaataggtcatttgatccttggctcactggcatctctctagatttttgaagtatacaatcttcaatctgatatgcaaggtaattccatcttgcaaaggatt--tggtgttacattttaccacacatacaactgagttaaactattacagaattggaaatgcacatcattgatcaaaataaatgaaacaagaaaagagtagaaaggaatcaccagtgatggaatagc-aatatgaatagaaaatgcaataggaatgctaaaa
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2943314 301 -   3067355 gtgacagagaggaccagcaggccatgaaaatggccttggctacaaataggtcatttgatccttggctcactggcatctctctagatttttgaagtatacaatcttcaatctgacatgcaaggtaattccatcttgcaaaggatt--tggtgttacattttaccacacatacaactgagttaaactattacagaattggaaatgcacatcattgatcaaaataaatgaaacaagaaaagagtagaaaggaataaccagtgatggaatagc-aatatgaatagaaaacgcaataggactgctaaag
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           122423 300 +    187130 GTGACAGAAAGAACTAGGATGCCATGAAAATGGCCTTGGCTAAAAATAGGTCATTTGATCC-TGAATCACTGGTATCTCTCTAGATTTTT-AAGTATACAatgttaaatctgatgtgcaaggtaattcaaccttgcaaaggatt--tgatgttatattgtatcatacatacaactgaattaaacatttacagaattggaaatgcacaccattgatcaaaataaatgaaatcacaaaatagtagaaacgaatcatcagtgatgcaatagcaaatatgaatagaaaacaaaagaggactgcaaaaa
i saiBol1.JH378364         C 0 C 0
s aotNan1.NW_018496904v1     181196 301 -    383796 gtgacagagggaacatggattccatgaaaatggccttggctagaaatagatcatttgatccttggctcactggcatctctctagattttc-aactatacaatgtccaatctgatgtgcatggtaaatccatcttgcaaaggata--tgatgttacattttaccacacatacaactgaattaaacttttacagaattggaaatgcacaacatagatcaaaataaatgaaaccacaaaatagaagaaaggaataaccagtgatggaataggaaatatgaatagaaaacaaaagaggactgcaaaaa
i aotNan1.NW_018496904v1   C 0 I 15
e canFam3.chr12            71532675   0 -  72498081 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I

a score=49720.000000
s hg38.chr6_GL000254v2_alt  1083733 19 +   4827813 caaagaaaca----aacaaaacc
s panTro5.chr6             30049372 19 + 175400573 caaagaaaca----aacaaaacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30280013 19 + 173848474 caaagaaaca----aacaaaacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6088451 19 +   6154872 caaagaaaca----aacaaaacc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74779960 16 + 122973662 ataaaacaaa----aacaaa---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30383778 22 + 172585720 caaacaaacaaac-aacaaaacc
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002711v1     733240 19 +    766320 caaacaaaca----aacaaaacc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29218790 23 -  71996105 caaacaaagaaacaaacaaaacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      25618 23 +    273075 caaacaaagaaacaaacaaaacc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2943615 19 -   3067355 caaacaaaca----aacaaaacc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           122723 19 +    187130 atgagaaaag----aaaaaaacc
i saiBol1.JH378364         C 0 C 0
e canFam3.chr12            71532675  0 -  72498081 I
e aotNan1.NW_018496904v1     181497 15 -    383796 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I

a score=1126720.000000
s hg38.chr6_GL000254v2_alt  1083752 229 +   4827813 acttcagaagcacctgatggc-atgctatttagaatcatagtggtgtccaaatcacttctatcacatatcattcaatatcacaacaaaagatgttaagtgtattatagaatgctgatcgaatagccagttattgaaaaaactagtttctcaattcgagctaacaatttcgtgatactgcatcaaaccgaagttattggcat--------gctagatgtgttgactgaagtatgagatt
s panTro5.chr6             30049391 229 + 175400573 acttcagaagcacctgatggc-atgctatttagaatcatagtggtgtccaaatcacttctatcacatatcattcaataacacaacaaaagatgttaagtgtattatagaatgccgatcgaatagccagttatcaaaaaaactagtttctcaattcgagctaacaatttcgtgatactgcatcaaaccgaagttattggcat--------gctagatgtgttgactgaagtatgagatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30280032 229 + 173848474 acttcagaagcacctgatggc-atgctatttagaatcatagtggtgtccaaatcacttctatcacatatcattcaataacacaacaaaagatgttaagtgtattatagaatgccgatcgaatagccagttatcgaaaaaactagtttctcaattcgagctaacaatttcatgatactgcatcaaaccgaagttattggcat--------gctagatgtgttgactgaagtatgagatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6088470 229 +   6154872 acttcagaagcacctgatggc-atgctatttagaatcatagtggtgtccaaatcacttctatcacatatcattcaataacacaacaaaagatgttaagtgtattatagaatgccgatcgaatagccagttatcgaaaaaactagtttctcaattcgagctaacaatttcgtgatactgcatcaaaccgaagttattggcat--------gctagatgtgttgactgaagtatgagatt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74779976 238 + 122973662 acttcagaagcacataatagcaatgctatatagaatcatagcagtgtccaaatcacttctaccacatatcattcaataccacaacaaaagatgttaagtttgttatagaatgcctaccgaatagccagtttttCAATAAACTTGTTTCCCAATTCTAATTAACGATTTCGGGCTACTACATCAAACCAAAGTTATTGGCATTATGCTAAGCTAGACATGTTGACTGCAGTATGAGAtt
i nomLeu3.chr1a            C 0 T 64005
s rheMac8.chr4             30383800 236 + 172585720 acctcagaagcacctgatagcagtgctatttagaatcatagtggtgtcccaatcacttctatcacatatcattcaacaccacaacaaaagatgttaagtgtattatagaatgctgatagaatagccagttatcgaaaaaccttgtttctcaatttgaactaacaatttcatgatactgcatcaaacc--agttattggcatcaggctaagctagatgtgttaactgaagtatgagatt
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002711v1     733259 236 +    766320 acctcagaagcacctgatagcagtgctatttagaatcatagcggtgtccaaatcactgctatcacatatcattcaacaccacaacaaaagatgttaagtgtattatagaatgctgatcgaatagccagttatcgaaaaaccttgtttctcaattcgagctaacaatttcatgatactgcatcaaacc--agttattggcatcaggctaagctagatgtgttgactgaagtatgagttt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29218813 236 -  71996105 acctcagaagcacctgatagcagtgctatttagaatcatagtggtgtccaaatcacttctatcacatatcattcaacaccacaacaaaagatgttaagtgtattatagaatgctgatcgaatagccagttatcgaaaaaccttgtttctcaattcgagctaacaatttaatgatactgcatcaaacc--agttattggcatcaggctaagctagatgtgttgactgaagtatgagatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      25641 236 +    273075 acttcagaaacacctgatagcagtgctatttagaatcatagtggtgtccaaatcactgctatcacatatcattcaacaccacaacaaaagatgttaagtgtattatagaatgctgatcgaatagccagttatcgaaaaaccttgtttctcaattcgagctaacaatttcatgatactgcatcaaacc--agttattggcatcaggctaagctagatgtgttgactgaagtatgagatt
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2943634 236 -   3067355 acctcagaagcacctgatagcagtgctgtttagaatcatagtggtgtccaaatcacttctatcacatatcattcaacaccacaacaaaatatgttaagtgtattatagaatgctgatagaatagccagttatcgaaaaaccttgtttctcaatttgaactaacaatttcatgatactgcatcaaacc--agttattggcatcaggctaagctagatgtgttaactgaagtatgagatt
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           122742 221 +    187130 acttcagaagcacacaatagcagtgctatttagaatcatagtggtgtccaagtcacttctatcacatcttattcaataccagaaaaaaagg----atgtttattatagaatgcccactgaataggcagtttttgaaaaaacttgttTCTCAATTTG----AACAATTTCGGGTTACTCCATCAAACCAAAGTTATTGGCATCATGCTAAGCTAGATGTGTTGACCGAAG---------
i saiBol1.JH378364         C 0 C 0
s aotNan1.NW_018496904v1     181512 234 -    383796 acttcagatgcacgtaatagcagtactatttagaatcatagtgctgtcttaattacttctatcacatctcattcaatagcacaacaaaagatgttaagtttattatagactgcccactgagaagccagtatttgaaaaaatttctttctcaatttg----aactatttctgactactccatcaaaccaaagtcattgacatcatgctcagctagatgtgttgactgaagtatgagatt
i aotNan1.NW_018496904v1   I 15 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I

a score=338179.000000
s hg38.chr6_GL000254v2_alt  1083981 81 +   4827813 cacatctttgtaaatgaaaagcaatctgattaagcaatat--------ttttctaagtgaaagcaagttaattagag----aaagaaacaaag
s panTro5.chr6             30049620 81 + 175400573 cacatctttgtaaatgaaaagcaatctgattaagcaatat--------ttttctaagtgaaagcaagttaattagag----aaagaaacaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30280261 81 + 173848474 cacatctttgtaaatgaaaagcaatctgattaagcaatat--------ttttctaagtgaaagcaagttaattagag----aaagaaacaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6088699 81 +   6154872 cacatctttgtaaatgaaaagcaatctgattaagcaatat--------ttttctaagtgaaagcaagttaattagag----aaagaaacaaag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30384036 85 + 172585720 cacatctttgtaaatgaaaagaaatctgattaggcaatat--------ttttctaagtgaaagcaagttaattagagaagtaaagaaacaaag
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002711v1     733495 85 +    766320 cacatctttgtaaatggaaagcaatctgattaggcaatat--------ttttctaagtgaaagcaagttaattagagaagtaaagaaacaaag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29219049 85 -  71996105 cacatctttgtaaatgaaaagcaatctgattaggcaatat--------tttTCTaagtgaaagcaagttaattagagaagtaaagaaacaaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      25877 85 +    273075 cacatctttgtaaatggaaagcaatctgagtaggcaatat--------ttttctaagtgaaagcaagttaattagagaagtaaagaaacaaag
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2943870 85 -   3067355 cacatctttataaatgaaaagcaatctgattaggcaatat--------ttttctaagtgaaagcaagttaattagagaagtaaagaaacaaag
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           122963 69 +    187130 ------------------------TCTGACTGGGCAATTTGGCAATGGTTTTCTaaatgaaagcaagtttactagagaagcaaagaaacgaaa
i saiBol1.JH378364         C 0 I 5
s aotNan1.NW_018496904v1     181746 93 -    383796 cacatttttataaatgaaaagcaatctgattaggcaaTTTGGCAATGTTTTTCTaagtgaaagcaagtttactagagaagcaaagaaacaaaa
i aotNan1.NW_018496904v1   C 0 T 43639
e canFam3.chr12            71532675  0 -  72498081 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I
e nomLeu3.chr1a            74780214 64005 + 122973662 T

a score=93654.000000
s hg38.chr6_GL000254v2_alt  1084062 31 +   4827813 gat-ggctactcca-----gagacagagcagtacttc-----------------
s panTro5.chr6             30049701 31 + 175400573 gat-ggctactcca-----gagacagagcagcacttc-----------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30280342 31 + 173848474 gat-ggctactcca-----gagacagagcagtacttc-----------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6088780 31 +   6154872 gat-ggctactcca-----gagacagagcagtacttc-----------------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30384121 31 + 172585720 gac-ggctactcca-----gagacagagcagtgcttc-----------------
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002711v1     733580 32 +    766320 gacaggctactcca-----gagacagagcagtgcttc-----------------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29219134 31 -  71996105 gac-ggctactcca-----gagacagagcagTGCTTC-----------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      25962 31 +    273075 gac-ggctactcca-----gagacagagcagtgcttc-----------------
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2943955 31 -   3067355 gat-ggctactcca-----gagacagagcagtgcttc-----------------
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           123037 49 +    187130 -----gatcctccacagagcagacagagcagcatttttgttgttgttttttCAC
i saiBol1.JH378364         I 5 I 10
e canFam3.chr12            71532675  0 -  72498081 I
e aotNan1.NW_018496904v1     181839 43639 -    383796 T
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I
e nomLeu3.chr1a            74780214 64005 + 122973662 T

a score=908352.000000
s hg38.chr6_GL000254v2_alt  1084093 214 +   4827813 tttttttaagtgtaggcaaatgttttttggaagacgatatttcaataagaaaactggcactaggggcatacttcccctaaatttgagacattttagacaaaacaaagacttattttcaaggcattatttttatagcactaaagtcttggaactatttgatctagttattctatgttctcaactgtgttaactcattgaagagaacattgctgtt
s panTro5.chr6             30049732 214 + 175400573 tttttttaagtgtaggcaaatgttttttggaagacgatatttcaataagaaaactggcactaggggcatacttcccctaaatttgagacattttagacaaaacaaagacttattttcaaggcattatttttatagcactaaattcttgtaactatttgatctagttattctatgttctcaactgtgttaactcattgaagagaacattgctgtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30280373 214 + 173848474 tttttttaagtgtaggcaaatgttttttggaagacgatatttcaataagaaaactggcactaggggcatacttcccctaaatttgagacattttagacaaaacaaagacttattttcaaggcattatttttatagcactaaattcttgtaactatttgatctagttattctatgttctcaactgtgttaactcattgaagagaacattgctgtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6088811 212 +   6154872 tttttttaagtgtaggcaaatgttttttggaagac-atatttcaataagaaaactggcacta-gggcatacttcccctaaatttgagacattttagacaaaacaaagacttattttcaaggcattatttttatagcactaaagtcttggaactatttgatctagttattctatgttctcaactgtgttaactcattgaagagaacattgctgtt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30384152 212 + 172585720 tttttttaagtgtaggcaaatgtttttt-gaagat-gtatttcaataagaaaattggcgcttgggacatacttccactaaatttgagacattttagacaaaacaaagacttattttcaagacattatttttatggcactgaagtcttggaactatttgatctagttactctatgttctcaactgtgttaactcattgaagagaacattgttgtt
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002711v1     733612 212 +    766320 tttttttaagtgtaggcaaatgtttttt-gaagat-gtatttcaataagaaaattggcgcttgggacatacttccactaaatttgagacattttagacaaaacaaagacttattttcaagacattatttttatggcactaaagtcttggaactatttgatctagttactctatgttctcaactgtgttaactcattgaagagaacattgttgtt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29219165 212 -  71996105 TTTTTTTAAGTGTAGGCAAATGTTTTTT-GAAGAT-GTATTTCAATAAGAAAATTGGCGCTTGGGACATACTTCCACTAAATTTGAGACATTTTAGACAAAACAAAGACTTATTTTCaagacattatttttatggcactaaagtcttggaactatttgatctagttactttatgttctcaattgtgttaactcattgaagagaactttgttgtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      25993 212 +    273075 tttttataagtgtaggcaaatgtttttt-gaagat-gtatttcaataagaaaattggcgcttgggacatacttccactaaatttgagacattttagacaaaacaaagacttattttcaagacattatttttatggcactaaagtcttggaactatttgatctagttactctatgttctcaactgtgttaactcattgaagagaacattgttgtt
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2943986 212 -   3067355 tttttttaagtgtaggcaaatgtttttt-gaagat-gtatttcaataagaaaattggtgcttgggacatacttccactaaatttgagacattttagacaaaacaaagacttattttcaagacataatttttatgggactaaagtcttggaactatttgatctccttactctatgttctcaactgtgttaactcattgaagagaatgttgttgtt
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           123096 203 +    187130 TGTTTTTTAGTGTAggcaaatgttttat-gaagatgacatttcaacaagaaaattggcaCTTGGGGCATACCTCCACCAAATTTGAGACATCGTAGACAAAACAAAGACTTATTTTCATGGCATTATTTTTATGGCACTGTAGTCTTG----------ATTTAGTTATGCCATGTTCTCAACTGTGTTAACTCACTGAATAGAACATTGCTGTT
i saiBol1.JH378364         I 10 C 0
s aotNan1.NW_018496904v1     138200 210 -    383796 TTTTTTTAAGTATACGCAGATGTTTTTT-GAAGAAGATATTTCAATAAGAAAACGGGCCCTTGGGGCATATTTCCACTAAATTTGAGAAATCTTAGACAAAACAAAGACTTATTTTCaaggcattatttttatggaaatgaagacttggaactatttaatctagttactctacgttcaaaactgtgttaactcattaaagagaaaat---tgtt
i aotNan1.NW_018496904v1   T 43639 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I
e nomLeu3.chr1a            74780214 64005 + 122973662 T

a score=39490.000000
s hg38.chr6_GL000254v2_alt  1084307 9 +   4827813 attaaagat
s panTro5.chr6             30049946 9 + 175400573 attaaagat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30280587 9 + 173848474 attaaagat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6089023 9 +   6154872 attaaagat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74716209 9 + 122973662 aacaacgat
i nomLeu3.chr1a            T 64005 C 0
s rheMac8.chr4             30384364 9 + 172585720 attaaagat
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002711v1     733824 9 +    766320 attaaagat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29219377 9 -  71996105 attaaagat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      26205 9 +    273075 attaaagat
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2944198 9 -   3067355 attaaagat
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           123299 9 +    187130 ATTATAACT
i saiBol1.JH378364         C 0 I 459
s aotNan1.NW_018496904v1     138410 9 -    383796 attataggt
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12            71532675 0 -  72498081 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I

a score=20329.000000
s hg38.chr6_GL000254v2_alt  1084316 4 +   4827813 attg
s panTro5.chr6             30049955 4 + 175400573 attg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30280596 4 + 173848474 attg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6089032 4 +   6154872 attg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74716218 4 + 122973662 attg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30384373 4 + 172585720 attg
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002711v1     733833 4 +    766320 attg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29219386 4 -  71996105 attg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      26214 4 +    273075 attg
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2944207 4 -   3067355 attg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           123767 4 +    187130 attt
i saiBol1.JH378364         I 459 C 0
s aotNan1.NW_018496904v1     138419 4 -    383796 attt
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12            71532675 0 -  72498081 I
e cebCap1.NW_016107755v1     431283 43575 -   1771730 T
e calJac3.chr4             30147357 50966 + 171630274 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I

a score=1485456.000000
s hg38.chr6_GL000254v2_alt  1084320 243 +   4827813 gcaagaaaaactcagagatactgttgtatctcctttctctgcctcaaactgttTTCCCCTCAACACCTAAGGCTCTGTGATGTCTCAAACTTTTAGTCATTAATTTAAAAAGTGAAGCTTAtcatagaattag--aaaaaaactattttaaaattcatatggatcc-aaaaaagagctcctatagccagaagaatcctaagcaaaaagaacaaagctggaggcatgaggctacctgacttaaaact
s panTro5.chr6             30049959 243 + 175400573 gcaagaaaaactcagagatactgttgtatctcctttctctgcctcaaactgttTTCCCCTCAACACCTAAGGCTCTGTGATGTCTCAAACTTTTAGTCATTAATTTAAAAAGTGAAGCTTAtcatagaattag--aaaaaaactattttaaaattcatatggatcc-aaaaaagagctcctatagccagaagaatcctaagcaaaaagaacaaagctggagacatgaggctacctgacttaaaact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30280600 243 + 173848474 gcaagaaaaactcagagatactgttgtatctcctttctctgcctcaaactgttTTCCCCTCAACACCTAAGGCTCTGTGATGTCTCAAACTTTTAGTCATTAATTTAAAAAGTGAAGCTTAtcatagaattag--aaaaaaactattttaaaattcatatggatcc-aaaaaagagctcctatagccagaagaatcctaagcaaaaagaacaaagctggagacatgaggctacctgacttaaaact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6089036 243 +   6154872 gcaagaaaaactcagagatactgttgtatctcctttctctgcctcaaactgttTTCCCCTCAACACCTAAGGCTCTGTGATGTCTCAAACTTTTAGTCATTAATTTAAAAAGTGAAGCTTAtcatagaattag--aaaaaaactattttaaaattcatatggatcc-aaaaaagagctcgtatagccagaagaatcctaagcaaaaagaacaaagctggaggcatgaggctacctgacttaaaact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74716222 241 + 122973662 gcaagaaaatctcagagatactgttgtatctcctttctctgtcttgaactgttTTCCCCTCAGCACCCAAGGCTCTGTGATGTCTCAAATTTTTAATTATAAATTTTAAAAGAGAAGCTTAtcatggaattag--aaaaaaactattttacaatgcatatggatcc--aaaaagagctcgtatagccaggagaatcctaagcaaaaagaa-aaagctagaggcatcaggctacctgacttaaaact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30384377 243 + 172585720 gcaagaaaaactcagagatactgttgtatctcctttatctgcctcaagctgttTTCTCCTCAACACGTAAGGCTCTGTGATGTCTCAAACTTTTAATCATTAATTTAAAAAGTGAAGCTTAtcacagaattac--aaaaaaactattttaaaattcatatggatcc-aaaaaagagttcatatagccaggagaatcctaagcaaaaataacaaagctggaggcatgaggctacccgacttaaaagt
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002711v1     733837 243 +    766320 gcaagaaaatctcagagatactgttgtatctcctttatctgcctcaaactgttTTCTCCTCAACACGTAAGGCTCCGTGATGTCTCAAACTTTTAATCATTAATTTAAAAAGTGAAGCTTAtcacagaattag--aaaaaaactattttaaaattagtatggatcc-aaaaaagagctcatatagccaggagaatcctaagcaaaaagaacaaagctggaggcatgaggctacccgacttaaaagt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29219390 243 -  71996105 gcaagaaaaactcagagatactgttgtatctcctttatctgcctcaaactgttTTCTCCTCAACACGTAAGGCTCTGTGATGTCTCAAACTTTTAATCATTAATTTAAAAAGTGAAGCTTAtcacagaattac--aaaaaaactattttaaaattcatatggatcc-aaaaaagagttcatatagccaggagaatcctaagcaaaaagaacaaagctggaggcatgaggctacccgacttaaaagt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      26218 245 +    273075 gcaagaaaatctcagagatactgttgtatctcctttatctgcctcaaactgttTTCTCCTCAACACGTAAGGCTCTGTGATGTCTCAAACTTTTAATCATTAATTTAAAAAGTGAAGCTTAtcgcagaattacaaaaaaaaactattttaaaattcatatggatcc-aaaaaagagttcatatagccaggagaatcctaagcaaaaataacaaagctggaggcatgaggctacccgacttaaaagt
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2944211 243 -   3067355 gcaagaaaatctcagagatactgttgtatctcctttatctgcctcaaactgttTTCTCCTCAACACGTAAGGCTCCGTGATGTCTCAAACTTTTAATCATTAATTTAAAAAGTGAAGCTTAtcacagaattac--aaaaaaactattttaaaattcatatggatcc-aaaaaggagctcatatagccaggagaatcctaagcaaaaagaacaaagctggaggcatgaggctaccccacttaaaact
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           123771 238 +    187130 gcaagaaaaa--cagagatattgttgaatctactttctctgtctcaaactgttTTTCCCTCAGCACCCAAGGCTCTGTAATGTCTTAAACTTTTAATCATTAATTTAAAAAGAGAAGCTTAtcacagaattag--aaaaaaactattttacaactcatatggatcc-aaaaaagagcttgtatagccaggagaatctaaagcaaaaagaacaaagctgtaggcatcaggctacctgacttcaa---
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     387708 243 -   1771730 gcaagaaaaactcagagatattgttgaatctcctttctctgtctcaaactgttTTTCCCTCAGCACCCAAGGCTCTGTGATATCTTAAACTCTTAATCATTAATTTAAAAAGAGAAGCTTAAcacagaattag--aaaaaaactattttaaaattcatatggatcc-aaaaaacaacttgtgtagacaggagaatcttaagcaaaaagaacaaagctggaggcatcagactacctgacttaaaact
i cebCap1.NW_016107755v1   T 43575 C 0
s aotNan1.NW_018496904v1     138423 240 -    383796 gcaagaaaaactcagagataccgtattatcttctttctccatctcaaactgttTCCCCCTCAGCACCCAAGGCTCTGTGATGTCTTGAACTTTTAATCACTAATTT-AAAAGAGAAGCTTAtcgcacaattag--aaaaaaactattttaaaattcatatggatctaaaaaaagagcttgtatacttgtgagaatcctaagcaaaaagaacaaa-ttagcggcatcagactaccagac--aaaact
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e calJac3.chr4             30147357 50966 + 171630274 I
e macNem1.NW_012012100v1     149633 222 +   1495729 I

a score=3279681.000000
s hg38.chr6_GL000254v2_alt  1084563 482 +   4827813 atactacaaggctacagtaactgaaacagcaaggtactggtacaaaa-------------acaggcacatagaccaatggaacagaatagagaactcagaaataagaccacacatctaaaaccctgtgatcttcaat-gagcccgacaaaaataagcaatgggcaaaggattccctatttaacaaatggtgctgggagaactggctagcaatctgcagaaaattgaaactggactccttccttacaccttgcccaaaaattaacttaagatggattaaagacttaaatgtaaatcccaaaactataaaaaccctggaagaaaatctaggcaataccaatcaggacatagggatg-ggcaaaga-ttttatgatgaaaatgccaaaagcaactgccacaaaagcaaaaattgacaaatgggatctaattaaacaaaagagcttctgtagagtgaaagaaactattatcagagtgaacagacatcctacagaatgggaga
s panTro5.chr6             30050202 482 + 175400573 atactacaaggctatagtaactgaaacagcaaggtactggtacaaaa-------------acaggcacatagaccaatggaacagaatagagaactcagaaataagaccacacatctaaaaccctgtgatcttcaat-gagcctgacaaaaataagcaatgggcaaaggattccctatttaacaaatggtgctgggagaactggctagcaatctgcagaaaattgaaactggactccttccttacaccttgcccaaaaattaacttaagatggattaaagacttaaatgtaaatcccaaaactataaaaaccctggaagaaaatctaggcaataccaatcaggacatagggatg-ggcaaaga-ttttatgatgaaaatgccaaaagcaactgccacaaaagcaaaaattgacaaatgggatctaattaaacaaaagagcttctgtagagtgaacgaaactattatcagagtgaacagacatcctacagaatgggaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30280843 482 + 173848474 atactacaaggctatagtaactgaaacagcaaggtactggtacaaaa-------------acaggcacatagaccaatggaacagaatagagaactcagaaataagaccacacatctaaaaccctgtgatcttcaat-gagcctgacaaaaataagcaatgggcaaaggattccctatttaacaaatggtgctgggagaactggctagcaatctgcagaaaattgaaactggactccttccttacaccttgcccaaaaattaacttaagatggattaaagacttaaatgtaaatcccaaaactataaaaaccctggaagaaaatctaggcagtatcaatcaggacatagggatg-ggcaaaga-ttttatgatgaaaatgccaaaagcaactgccacaaaagcaaaaattgacaaatgggatctaattaaacaaaagagcttctgtagagtgaaagaaactattatcagagtgaacagacatcgtacagaatgggaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6089279 481 +   6154872 atactacaaggctacagtaactgaaacagcaaggtactggta-aaaa-------------acaggcacatagaccaatggaacagaatagagaactcagaaataagaccacacatctaaaaccctgtgatcttcaat-gagcctgacaaaaataagcaatgggcaaaggattccctatttaacaaatggtgctgggagaactggctagcaatctgcagaaaattgaaactggactccttccttacaccttgcccaaaaattaacttaagatggattaaagacttaaatgtaaatcccaaaactataaaaaccctggaagaaaatctaggcaatatcaatcaggacatagggatg-ggcaaaga-ttttatgatgaaaatgccaaaagcaactgccacaaaagcaaaaattgacaaatgggatctaattaaacaaaagagcttctgtagagtgaaagaaactattatcagagtgaacagacatcctacagaatgggaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74716463 482 + 122973662 ctactacaaggctacagtaaccaaaacagcatggtactggtacaaaa-------------acaggcacatagaccaatggaacagaatagagaactcagaaaggagaccacgtatctacaactatttgatctttaaa-aaacctgacaaaaacaagcaatggggaaatgattccctatttcataaatggtgctgggagaactggctagccataggcagaaaattgaaactggaccccttccttatactttacacaaaagttaactcaagatgggttaaaaacttaagtgtgaaacccaaaactagaaaaaccctggaagaaaatctaggcaataccattcaggatatatgcatg-agcaaaga-ttttatgatgaaatcgccaaaagcatataccactaaagcaaaaattgacaaatgggatctaattaaacaaaagagcttctgcacagcaaaagaaactatcatcagagcaaacagacatcctacagagtgggaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30384620 473 + 172585720 atactacaaggc-acagtaaccaaaacagcatggtactggta-caaa-------------acaggcacatagaccaat------gaatagaaaactcagaaataagaccacacatctaaaaccttgtgatcttcaac-gagcctgacaaaaataatcaatgggcaaaggattccctatttaatcaacggtgctgggagaactggctatcaatatgcagaaaattgaagctggactccttccttacaccttac-ccaaaattaacttatgatggattaaagacttaaatgtaaattccaaaactataaaaaccctggaagaaaatctaggcaataccattcaggacatagggatg-ggcaaaga-ttttatgatgaaaacaccaaaagcaactgccacaaaaccaaaaattgacaaatgggatctaattaaacaaaagagcttctacagagcaaaagaaactattatcagagtgaacagacatcctacagaatgggaga
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     149855 477 +   1495729 atactacaaggctacagtaaccaaaacagcatggtactggta-aaaa-------------acaggcacacagaccaatggaacagaatagagaactcagaaataagactgcacatctgcaagcatgtgctctgcaacaaaatctgacaaaaataagcaacagggaaatg-----ctgtttaataaatgctgctggaagaactggctagccatatgcagaaaattgaaactggaccccttctttacaccttatacaaaaattaactgaagatggattaaagacttacatgtaaaacccaaaactagaaaaaccctagaagaaaatctaggcaatactattcagcacataggcatc-agcaaagatttttgtgatgaaatcacc-aaagcaactgccacaaaagcaaaaattgacaaatgggatccaattaaacaaaagagcttctgcacagcaaaagaaaccatcatcagagtgaacagacatcctacagaatgggaga
i macNem1.NW_012012100v1   I 222 C 0
s cerAty1.NW_012002711v1     734080 473 +    766320 atactacaaggc-acagtaaccaaaacagcatggtactggta-caaa-------------acaggcacatagaccaat------gaatagaaaactcagaaataagaccacacgtctaaaaccttgtgatcttcaac-gagcctgacaaaaataatcaatgggcaaaggattccctatttaataaacggtgctgggagaactggctagcaatatgcagaaaattgaagctggactccttccttacaccttac-ccaaaattaacttatgatggattaaagacttaaatgcaaattccaaaactataaaaaccctggaagaaaatctaggcaataccattcaggacatagggatg-ggcaaaga-ttttatgatgaaaacgccaaaagcaactgccacaaaaccaaaaattgacaaatgggatctaattaaacaaaagagcttctatagagtgaaagaaactattatcagaatgaacagacatcctacagaatgggaga
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29219633 474 -  71996105 atactacaaggc-acagtaaccaaaacagcatggtactggta-caaa-------------acaggcacatagaccaat------gaatagaaaactcagaaataagaccacacatctaaaaccttgtgatcttcaac-gagcctgacaaaaataatcaatgggcaaaggattccctatttaataaatggtgctgggagaactggctagcaatatgcagaaaattgaagctggactccttccttacaccatatacaaaaatcaactcaagatggattaaagacttaaatgtaaattccaaaactataaaaaccctggaagaaaatctaggcaataccattcaggacatagggatg-ggcaaagg-ttttatgatgaaaacgccaaaagcaactgccacaaaaccaaaaattgacaaatgggatctaattaaacaaaagagcttctacagagcaaaagaaactattatcagagtgaacagacatcctacagattgggaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      26463 473 +    273075 atactacaaggc-acagtaaccaaaacagcatggtactggta-caaa-------------acaggcacatagaccaat------gaatagaaaactcagaaataagaccacacgtctaaaaccttgtgatcttcaac-gagcctgacaaaaataatcaatgggcaaaggattccctatttaataaacggtgctgggagaactggctagcaatatgcagaaaattgaagctggactccttccttacaccttac-ccaaaattaactgatgatgaattaaagacttaaatgtaaattccaaaactgtaaaaaccctggaagaaaatctaggcaataccattcaggacataggaatt-ggcaaaga-ttttatgatgaaaacaccaaaagcaactgccacaaaaccaaaaattgacaaatgggatctaattaaacaaaagagcttctacagagcaaaagaaactattatcagagtgaacagacatcctacagaatgggaga
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2944454 474 -   3067355 atactacaaggc-acagtaaccaaaacagcatggtactggta-caaa-------------acaggcgcatagaccaat------gaatagaaaactcagaaataagaccacacatctaaaaccttgtgatcttcaac-gagcctgacaaaaataatcaatgggcaaaggatttcctatttaataaacgatgccgggagaactggctagcaatatgcagaaaattgaaactggactccttccttacaccttacccaaaaattaacttatgatggattaaagacttaaatgtaaattccaaaactagaaaaaccctggaagaaaatctaggcaataccattcaggacacagggatg-ggcaaaga-ttttatgatgaaaatgccaaaagcaactgccacaaaaccaaaaattgacaaatggcatctaattaaacaaaagagcttctatagagcgaaagaaactattatcagagtgaacagacatcctacagaatgggaga
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           124009 480 +    187130 --actacaaggctacagtaaccaaaacagcatggtaatggtgcaaaa-------------acaggcacatagatcaatggaacagaatggagaactcagaaataagaccgcacatctataaccattcaatctgcaac-aaacctgacaaaaacaagcagtgaggaaaggattctctatttaataaatgatgctgggagaactggctatccatatgcagaaaattgaaactggaccacttccttacaccttacacaaaaactacatcaagatagattaaaaacttaaatataaaactcaaaactgtaaaagccctggaagaaaatctaggaaatgctattcaggacataggcata-ggcaaaga-atttaagatgaaattgccaaatgcaactgacataaaagcaaaaattaacaaatgggatctaattaaacaaaagagcttctgcacagcaaaacaaactatcatcagagtgaacagacatcctacagaatgggaga
i saiBol1.JH378364         C 0 I 1
s cebCap1.NW_016107755v1     387951 482 -   1771730 atactacaaggctacagtaaccaaaacagcatggtaatggtacaaaa-------------acaggcacatagactaatggaacagaatagagaactcagaaataagaccgcacatctacaaccatttgatcttcaac-aaacctgacaaaaacaagcagtggggaaacgattctctatttaagaaatggtgctgggagaacagcctagccatatgcagaaaattgaaactggaccccttctttacaccttacacaaaaattaactcaaggtggattaaagacttaaatgtaaaactcaaaactataaaaaccctggaagaaaatctaggcaataccattcaggacataggcact-ggcaaaaa-ttttatgatgaaattgccaaaagcaactgccaaaaaagcaaaaattaacaaatgggatctaattaaacaaaagagcttctgcacagcaagagaagctatcaccagagtggacagacatcctacagaatgggaga
i cebCap1.NW_016107755v1   C 0 I 599
s aotNan1.NW_018496904v1     138663 493 -    383796 atacgacaaggctacagttcccaaaacagcatggtattgaaaaaaaaaacacacacacacacaggcatgtacacaaatggcacagaa-aaagaactcagaaagaagacctctcatttacaaccatgtgctttccaac-aaatgtgacaaaaacaggcaacaggggaaggatttcctatttaataaatggtgttgagagtactggctagccatatacagaaaattgaaactggaccccttccttacaccttgtataaaagttaactcaagatggattcaatacttaagtat-aaacccaaaactgcaaaaaccctggaagaaaatctaggcaacaccattcaagacatacacattgggcaaaga-ctttatgatgaaattgccaaa-gcaactgccacaaaagcaaaaattgacaaatgggatctaattaaagggaagaaattctgcccagcaaaagaaattatcatcagagcaaacaaacatcctacagaatgggaga
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e calJac3.chr4             30147357 50966 + 171630274 I

a score=1175693.000000
s hg38.chr6_GL000254v2_alt  1085045 208 +   4827813 aaattt-----------ttgcagtctgtccacctgacaaaggtctcatattcagaagctacaaagaacttaagcaaatttacaccaaa--aaaaaagcttcattaaaaagtggacaaaggacctaaacagacacttctcaaaagaagacatacatgtggccaataaacataag--aaaaaaagctaaacatcactgatcattagaaaaatgcaaatcaatact
s panTro5.chr6             30050684 208 + 175400573 aaattt-----------ttgcagtctgtccacctgacaaaggtctcatattcagaagctacaaagaacttaagcaaatttacaccaaa--aaaaaagcttcattaaaaagtggacaaaggacctaaacagacacttctcaaaagaagacatacatgtggccaataaacataag--aaaaaaagctaaacatcactgatcattagaaaaatgcaaatcaatact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30281325 207 + 173848474 aaattt-----------ttgcagtctgtccacctgacaaaggtctcatattcagaagctacaaagaacttaagcaaatttacacc-aa--aaaaaagcttcattaaaaagtggacaaaggacctaaacagacacttctcaaaagaagacatacatgtggccaataaacataag--aaaaaaagctaaacatcactgatcattagaaaaatgcaaatcaatact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6089760 208 +   6154872 aaattt-----------ttgcagtctgtccacctgacaaaggtctcatattcagaagctacaaagaacttaagcaaatttacaccaaa--aaaaaagcttcattaaaaagtggacaaaggacctaaacagacacttctcaaaagaagacatacatgtggccaataaacataag--aaaaaaagctaaacatcactgatcattagaaaaatgcaaatcaatact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74716945 210 + 122973662 aagttt-----------gtgcaatctatccatctgacaaaggtctaatattcagaatctacaaagaacttaagcaaatttacatgaaaataaaacaacttcattaaaaagtgggcaaaggacatgaacagaaacttctaaaaagaagacgtgcatgtggccaacaaaaatatg--aaaaaaagctcaacatcactgatcattacagaaatgcaaatcaaaacc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30385093 208 + 172585720 aaattt-----------ttgcaatctgtccatctgacaaaggtctcgtattcagaatccacaaagaacttaagcaaatttacatgaga--aaaacaacttcattaaaaagtggacaaaggacctaaacagacacttctcaaaagaagacatacatgtggccaataaacataag--aaaaaaagctaaacatcactgatcagaagaaaactgcaaatcaacgct
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     150332 201 +   1495729 aaattt-----------ttgcaatctatctatttgacaaaggtctaatactcagaatctacaaagaacataaacaaa-ttatatgaaa--aa---aacttcattaaaaagtggacaaaggacatgaacagacacttctcta---aagacatacatgtggccaaaaaacatact--ttaaaaagctcaacacaactgatcattagagaaatgcaagtcaaaatc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     734553 208 +    766320 aaatgt-----------ttgcaatctgtccatctgacaaaggtctcgtattcagaatctacaaaggacttaagcaaatttacatgaga--aaaacaacttcattaaaaagtggacaaaggacctaaacagacacttctcaaaagaagacatacatgtggccaataaacataag--aaaaaaagctaaacatcactgatcaaaagaaaaatgcaaatcaacact
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29220107 208 -  71996105 acattt-----------ttgcaatctgtccatctgacaaaggtctcgtattcagaatccacaaagaacttaagcaaatttacatgaga--aaaacaacttcattaaaaagtggacaaaggacctaaacagacacttctcaaaagaagacgtacatgtggccaataaacataag--aaaaaaagctaaacatcactgatcagaagaaaaatgcaaatcaacact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      26936 208 +    273075 aaatgt-----------ttgcaatctgtccatctgacaaaggtctcgtattcagaatccacaaagaacttaagcaaatttacatgaga--aaaacaatttcattaaaaagtggacaaaggacctaaacagacacttctcaaaagaagacatacatgtagccaataaacataag--aaaaaaagctaaacatcactgatcagaagaaaaatgcaaattaacact
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2944928 208 -   3067355 aaattt-----------ttgcaatctgtccatctgacaaaggtcttgtattcagaatctacaaagaacttaagcaaatttacatgaga--aaaacaacttcattaaaaagtgggcaaaggacctaaacagacatttctcaaaagaagacacacatgtggccaataaacataag--aaaaaaagctaaacatcactgatcagaagaaaaatgcaaatcaacact
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           124490 212 +    187130 aaatttttcaatgtgtctttcaacatatcgatctgacaaaggtctaatattcagaatctaacaata----aggcaaatttacat--aa--aaaacaactttatcaaaaagtggacaaaggacatgaacagacacttctc-aaagaagacctacatgcagccaacaaacatatt--tttaaaagctgaacatcattgatcatcagagaaatgcaaatcaaaacc
i saiBol1.JH378364         I 1 C 0
s aotNan1.NW_018496904v1     139156 207 -    383796 aaattt-----------ttgcaatctattcatctgacaaaggtctaatattcagaatcagcaaataatttaagcaaatttacat--aa--aaaacaacttcattaaaaagtggacaaaggatgtgaacagatacttctcaaaagaagacatacatgaggccaa-aaacataataaaaaaaaagctcaacatcactaatcattggaaaaatgtaaatcaaaacc
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e cebCap1.NW_016107755v1     388433 599 -   1771730 I
e calJac3.chr4             30147357 50966 + 171630274 I

a score=419909.000000
s hg38.chr6_GL000254v2_alt  1085253 55 +   4827813 ac-aatgagataccatctcatgccagtcagaatggcaattatt-aaaagtcaagaaa
s panTro5.chr6             30050892 55 + 175400573 ac-aatgagataccatctcatgccagtcagaatggcaattatt-aaaagtcaagaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30281532 55 + 173848474 ac-aatgagataccatctcatgccagtcagaatggcaattatt-aaaagtcaagaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6089968 55 +   6154872 ac-aatgagataccatctcatgccagtcagaaaggcaattatt-aaaagtcaagaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74717155 57 + 122973662 acaaatgagataccatctcatgccagtcagaatggcaattattaaaaagccaagaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30385301 55 + 172585720 ac-aatgagataccattgcatgccagtcaggatggcaattatt-aaaagtcaagaaa
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     150533 56 +   1495729 ac-aatgagataccatctcatgccagtcagaatggcaattattaaaaagtcaagaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     734761 55 +    766320 ac-aatgagataccatctcatgccagtcagaatggcaattatt-aaaagtcaagaaa
i cerAty1.NW_012002711v1   C 0 M 819
s chlSab2.chr17            29220315 55 -  71996105 ac-aatgagataccatctcatgccagtcagaatggcaattatt-aaaagtcaagaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      27144 55 +    273075 ac-aatgagataccatctcatgccagtcagaatggcaattatt-aaaagtcaagaaa
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2945136 55 -   3067355 ac-aatgagataccatctcatgccagtcagaatggcaattatt-aaaagtcaagaaa
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           124702 55 +    187130 ac-aatgagatatcatctcatgccagtcagaatggcaattattaaaaagtcaag-aa
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     389032 56 -   1771730 ac-aatgagacaccatctcatgccagtcagaatggcaattactaaaaagtcaagaaa
i cebCap1.NW_016107755v1   I 599 C 0
s aotNan1.NW_018496904v1     139363 56 -    383796 ac-catgagatgccatctcatgccagtcagaatggcaattatttaaaagtcaagaaa
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12            71532675  0 -  72498081 I
e calJac3.chr4             30147357 50966 + 171630274 I

a score=51362.000000
s hg38.chr6_GL000254v2_alt  1085308 8 +   4827813 caacagat
s panTro5.chr6             30050947 8 + 175400573 caacagat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30281587 8 + 173848474 caacagat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6090023 8 +   6154872 caacagat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74717212 8 + 122973662 caacagat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30385356 8 + 172585720 caacagat
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     150589 8 +   1495729 gaacagaa
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29220370 8 -  71996105 caacagat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      27199 8 +    273075 caacagat
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2945191 8 -   3067355 caacagat
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           124757 8 +    187130 caacagat
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     389088 8 -   1771730 caacagat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     139419 8 -    383796 aaacagat
i aotNan1.NW_018496904v1   C 0 I 4525
e canFam3.chr12            71532675 0 -  72498081 I
e calJac3.chr4             30147357 50966 + 171630274 I
e cerAty1.NW_012002711v1     734816 819 +    766320 M

a score=20501.000000
s hg38.chr6_GL000254v2_alt  1085316 5 +   4827813 gctgg
s panTro5.chr6             30050955 5 + 175400573 gctgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30281595 5 + 173848474 gctgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6090031 5 +   6154872 gctgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74717220 5 + 122973662 gctgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30385364 5 + 172585720 gctgg
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     150597 4 +   1495729 g-tgc
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29220378 5 -  71996105 gctgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      27207 5 +    273075 gctgg
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2945199 5 -   3067355 gctgg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           124765 5 +    187130 gctgc
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     389096 5 -   1771730 gctgc
i cebCap1.NW_016107755v1   C 0 C 0
e canFam3.chr12            71532675 0 -  72498081 I
e aotNan1.NW_018496904v1     139427 4525 -    383796 I
e calJac3.chr4             30147357 50966 + 171630274 I
e cerAty1.NW_012002711v1     734816 819 +    766320 M

a score=4384340.000000
s hg38.chr6_GL000254v2_alt  1085321 773 +   4827813 caaggttgcagagaaataggaaggcttttacactgttggtggaaatgtaaattggttcaaccattgtggaagacagtgtggcaattcctcaaagatttagaaccagaaataccatttgacccagcaatcccattaaaggttatatacccaaaggaatataaatcattctat-----------------ta-taaaggtatatgcatgtgtatgttcattgcagcactattcacaatagcaaagacatggaatcaacccaaatgcccacaaatgaggaactgg-ataaagaaaatatagtacatatacaccacggaatattatgcaaccataaaaaggaatgagatcaagtcctttgc------------------------------agagatacgaatgaagctggaagccattatcctcagcaaactcacacaggaacagaaaaccaaacactgcatgttctcacttataattgggaactgagcaatgagaatacatggaaccagggagaggaaaaacaca--caatggggcctgttcggggagggcagtgatggggggatcattaggaaaaatagctaatgaatgccagggttaacacctaggtgatgggttgataggtacagccaaccaccatggcacacgattacctatgtaacaaacctgcacatcctgcacacgtaccctggaactt-aaaattaaattaaattaaattaaattaaa----------agataagcttaaagc--------------------------------------attaaagaaaaATAATTAGATA--AAAGAAGTCTTTGATTTACAAAATCCTGAAACAATAGTTTTAATTTtgcttttaacatatacgt
s panTro5.chr6             30050960 778 + 175400573 caaggttgcagagaaataggaaggcttttacactgttggtggaaatgtaaattggttcaaccattgtggaagacagtgtggcaattcctcaaagatttagaaccagaaataccatttgacccagcaatcccattacaggttatatacccaaaggaatataaatcattctat-----------------ta-taaaggtatatgcatgtgtatgttcattgcagcactattcacaatagcaaagacatggaatcaacccaaatgcccaccaatgaggaactgg-ataaagaaaatatggtacatatacaccacggaatattatgcaaccataaaaaggaatgagatcaagtcctttgc------------------------------agagatacgaatgaagctggaagccattatcctcagcaaactcacacaggaacagaaaaccaaacaccgcatgttctcacttataattgggaactgagcaatgagaatacatggaaacagggagaggaaaaacaca--caatggggcctgttcggggagggcagtgatggggggatcattaggaaaaatagctaatgaatgccagggttaacacctaggtgatgggttgataggtacagccaaccaccatggcacatgattacctatgtaacaaacctgcacatcctgcacatgtaccctggaactt-aaaattaaattaaattaaattaaattaaa-----ttaaaagataagcttaaagc--------------------------------------attaaagaaaaataattagata--aaagaagtctttgatttacaaaatcctgaaacaatagttttaattttgcttttaacatatacgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30281600 783 + 173848474 caaggttgcagagaaataggaaggcttttacactgttggtggaaatgtaaattggttcaaccattgtggaagacagtgtggcaattcctcaaagatttagaaccagaaataccatttgacccagcaatcccattacaggttatatacccaaaggaatataaatcattctat-----------------ta-taaaggtatatgcatgtgtatgttcattgcagcactattcacaatagcaaagacatggaatcaacccaaatgcccaccaatgaggaactgg-ataaagaaaatatggtacatatacaccacggaatattatgcaaccataaaaaggaatgagatcaagtcctttgc------------------------------agagatatgaatgaagctggaagccattatcctcagcaaactcacacaggaacagaaaaccaaacaccgcatgttctcacttataattgggaactgagcaatgagaatacatggaaacagggagaggaaaaacaca--caatggggcctgttcggggagggcagtgatggggggatcattaggaaaaatagctaatgaatgccagggttaacacctaggtgatgggttgataggtacagccaaccaccatggcacatgattacctatgtaacaaacctgcacatcctgcacatgtaccccggaactt-aaaattaaattaaattaaattaaattaaattaaattaaaagataagcttaaagc--------------------------------------attaaagaaaaataattagata--aaagaagtctttgatttacaaaatcctgaaacaatagttttaattttgcttttaacatatacgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6090036 768 +   6154872 caaggttgcagagaaataggaaggcttttacactgttggtggaaatgtaaattggttcaaccattgtggaagacagtgtggcaattcctcaaagatttagaa-cagaaataccatttgacccagcaatcccattacaggttatata-ccaaaggaatataaatcattctat-----------------ta-taaaggtatatgcatgtgtatgttcattgcagcactattcacaatagcaaagacatggaatcaacccaaatgcccaccaatgagggactgg-ataaagaaaatatggtacatatacaccatggaatattatgcaaccataaaaaggaatgagatcaagt-ctttgc------------------------------agagatacgaatgaagctggaagccattatcctcagcaaactcacacaggaacagaaaaccaaacaccgcatgttctcacttataattgggaactgagcaatgagaatacatggaaccagggagaggaaaaacaca--caatggggcctgttcagggagggcagtgat-gggggatcattaggaaaaatagctaatgaatgccagggttaacacct-ggtgatgggttgat-ggtacagccaaccaccatggcacacgattacctatgtaacaaacctgcacatcctgcacatgtaccctggaacttaaaaattaaattaaattaaattaaattaaa----------agataagcttaaagc--------------------------------------attaaagaaaaataattagata--aaagaagtctttgatttacaaaatcctgaaacaatagttttaattttgcttttaacatatacgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74717225 762 + 122973662 cgaggttgcagagaaataagaaggcttttacatggtt-gtggaaaagtaaatcagttaatccattgtggaagacagtgtggtgattcctcaaagatttagaaccagaaataccattcgacccagcagtcccattacagggcttatacccagaggaatataaatcattctat-----------------ta-taaaggtatatgcatgtttacattcattgcagcactattcacaatagcaaagacatggaatcaacccaaatgcccatcaatgatggactgg-ataaagaaaatatggtatatatacaccacagaatattatgcagccataaaaaggaatgagatcaagtcctttgc------------------------------agagatatggattaagctggaagccattatcctcagaaaactaacacaggaacagaaaaccaaacaccacatgtcctcatttataattgggaactgagcaatgagaacacatggacctaggaagaggaacaacata--cactggggcctgttgggggagggtggtggtggggggatcattagcaaaaatagctaatgcatgccagggttaatacctaggtgatgggttgataggtgcggcaaaccaccacggcacacgtttacctatgtaacaaacctgcacatcctgcacatgtaccctgaaactt-aaaattaaattaaattaaa--------------------agaCAAGCTTAAAGA--------------------------------------GTTAATGAAAAATAATTAGATA--AAAGAAGACTTTGATTTTCAAAAACCTGAAACAATAGTTATAATTTTGCAtttaacatatattc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30385369 762 + 172585720 tgaggttgcagagaaacaggaatgcttttacactgttggtggaaatgtaaattggttcaaccattgtggaagacagtgtggcaattcctcaaagatttagaaccagaaataccatttgacccagcaatcccactataggttatatacccaaaggaatataaattattctat-----------------tataaagggtatatgcatgtgtatgttcattgcagtactattcacaatagcaaagacacagaatcaatccaagtgcccaccaatgatggactgg-atggagaaaatatagtacatatacactatggaatattatgcaaccataaaaaggattgagatcaagtcctttgc------------------------------aggaatatgaatgaagctggaagccattatcctcagcaaactcacacaggaacagaaaaccaaacaccacatgttctcacttataattgggaactgagcaatgagaacacatggacacagggagaggagcagcaca--cactggggcctgttgggagagtgcagtgatggggggatcattagcaaaaatggctaatgcatgccagggttaacacctaggtga-aggttgataggtgcagcaaaccactatggcacatgtttacctatgtaacaaacctgcacat---------gtaccctggaactt-aaaatt-agttaaattaaaTTAAATTaaa----------agacaagcttaaagc--------------------------------------attaaagaaaaataattagata--aaagaaggctttgttttacaaaatcctgaaacaataatttgaattTtgcttttaacgtata-gc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     150601 770 +   1495729 tgagcttgtggagaaataggaatgcttttacactattgatggacatgtaaattggttcaaccattgtggaagacagtgtggcgattcctcaaagatttagaaccagaaatatcatttgactcaacaatcccattagagggtatatacccaaaggaatataaatcattctgt-----------------ta-aaaagatacatgcatatgtatgttcattgcagcactatacacaatagcaaagacatggaatcaacccaaaaacccatcaatgatggactgg-ataaagaaaatatggtacatatacaccatggaatattatgcagttataaaaaggaatgacatcaagtcttttgc------------------------------agggatatggatgaagctggaagccattatcctcagcgaactaacacaggaacagaaaaccaaacactgcatgttatcacttataattaggagctgaacaatgagaacacgtggacaaagggagaggaacaacacagttgttggggtctgttgggagagggcagtggtcagcagagcattaggaaaaatagctaatgcatgctggtgttaatacctaggtgatgggttgataggtggagaaaaccaccatggcacatgtttacctatgtaacaaacctgcacatcctgcacaggtaccctggaactt-aaaa-----tacaattaaaTTAAATTTAa----------aaacaagcttaaagc--------------------------------------attaaagaaaaacaattagata--taaaaagactttgatttacaaaatcctgaaacaataattttaattttgcttttaacatatatgc
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29220383 763 -  71996105 tgaggttgcagagaaacaggaaggcttttacactgttggtggaaatgtaaattggttcaaccattgtggaagacagtgtggtgattcctcaaagatttagaaccagaaataccatttgacccagcaatcccactataggttatatacccaaaggaatataaattattctat-----------------ta-taaaggtatatgcatgtgtatgttcattgcagtactattcacaatagcaaagacacagaaccaacccaagtgcccaccaatgatggactgg-atggagaaaatatagtacatatacaccatggaatattatgcaaccataaaaaggattgagatcaagtcctttgc------------------------------aggaatatgaatgaagctggaagccattatcctcagcaaattcacacaggaacagaaaaccaaacaccacatgttctcacttataattgggaactgagcaatgagaacacatggacacagggagaggagcagcaca--cactggggcctgttgggagagtgcagtgatggggggatcattagcaaaaatggctaatgcatgccagggttaacacctaggtgatgggttgataggtgcagtaaaccactatggcacatgtttacctatgtaacaaacctgcacat---------gtaccctgcaactt-aaaattaagttaaattaaaTTAAATTaaa----------agacaagcttaaagc--------------------------------------attaaagaaaaataattagata--aaagaaggctttgttttacaaaatcctgaaacaataattttaattttgcttttaacgtata-gc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      27212 753 +    273075 tgaggttgcagagaaacaggaaggcttttacactgttggtggaaatgtaaattggttcaaccattgtggaagacagtgtggcaattcctcaaagatttagaaccagaaataccatttgacccagcaatcccactataggttatatacccaaaggaatataaattattctat-----------------ta-taaaggtatatgcatgtgtatgttcattgcagtactattcacaatagcaaagacacagaatcaatccaagtgcccaccaatgatggactgg-atggagaaaatatagtacatatacactatggaatgttatgcaaccataaaaaggattgagatcaagtcctttgc------------------------------aggaatatgaatgaagctggaagccattatcctcagcaaactcacacaggaacagaaaaccaaacaccacatgttctcacttataattgggaactgagcaatgagaacacatggacacagggagaggagcagcaca--cactggggcctgttgggagagtgcagtgatgggggaatcattagcaaaaatggctaatgcatgccagggttaacacctaggtgatgggttgatagatgcagcaaaccaccatggcacatgtttacctatgtaacaaacctgcacat---------gtaccctggaactt-a----------aaattaaattaaaTTaaa----------agacaagcttaaagc--------------------------------------attaaagaaaaataattagata--aaagaaggctttgttttactaaatcctgaaacaataattttaattttgcttttaacgtata-gc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2945204 761 -   3067355 tgaggttgcagagaaacaggaaggctttttcactgttggtggaaatgtaaattggttcaaccattgtggaagacagtgtggcaattcctcaaagatttagaaccagaaataccatttgacccagcaatcccactataggttatatacccaaaggaatataaatcattctat-----------------ta-taaaggtatatgcatgtgtatgttcattgcagtactattcacaatagcaaagacacagaatcaacccaagtgctcaccaatgatgaactgg-atgaagaaaatatagtacatatacaccatggaatattatgcaaccataaaaaggattgagatcaagtcctttgc------------------------------aggaatatgaatgaagctggaagccattatcctctgcaaactcacacaggaacagaaaaccaaacaccacatgttctcacttataattgggaactgagcaatgagaacacatggaaccagggagaggagcagcaca--cactggggcctgttgggggagggcagtgatgggggtatcattagcaaaaatagctaatgcatgccagggttaacacctaggtgatgggttgataggtgcagcaaaccaccatggcacacgtttacctatgtaacaaacctgcacat---------gtaccctggaactt-aata--aaataaaataaaataaaataaaa----------agacaagcttaaagc--------------------------------------attaaagaaaaataattagata--aaagaaggctttgttttacaaaatcctgacacaataattttaattttgcttttaacgtaca-gc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           124770 801 +    187130 caaagttgcagagtaataggaatgcttttacactgttggtggaaatgtaaattggctcaaccattgtggaagacaatgtggcaattcctcaaagatttagaaccagaaataccatttgacccagcaattccattacagggtatatactcaaaagaatagaaatcattccatatacccaaaggaatagaaa-taaagttagatgcatgtgtattttcactgcagtgatattcacaatagcaaagacatggaatcaatccaaatgcccatcaatgatgaacagg-ataaa-aaaatatgatacatctacaccatggaatattatggagccataaaaaggaatgagatcaagtcctttgc------------------------------agggatatggatgaagctggaagccattatcctcagcaaaccaacacaggaacagaaaatcatacattgcatgttctcatgtataattgagagctgagcaatgagaacacagggacacagggagagaaacaacaca--cactggggactgttgtgggagggtgggggtggggggagaatcaggaaaaatacctaatgcatgccaggcttcatacctaggtgatggtttgataggtgcagcaaaccaccatggcacacgtttacctatg-aacaaatctgcacatcctgcacatgtaccttagaactt-a----------aaatgaaatcaaattaaa----------aGTCAAGGTTAAAGCAGTATTTAAAATTAAATTAAAAG---AGGTTAAACCATATTAACAAAAAATAATTAGATA--AAAGAAGTCTTTGATTTAGAAAATCCTGAAACAATA-----AATTTTG-------CATatatgc
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     389101 783 -   1771730 caaagctgcagagaaatagaaatgcttttacactgttggtagaaatgtaaattggctcaaccattgtggaagacagtgtggcaattcttcaaagatttagaaccagaaataccatttgacctagcaatcccattacagggtatatacccaaaggaatagaagtcattctat-----------------ta-taaaaatagatgcatgtgtatgttaattgccgcactattcacaatagcaaagccatggaatcaacccaaatgcccatcaatgatggacaggaataat-aaaatatggtacatctataccttggaatattatggagccataaaaaggaatgagatcaagtcctttgc------------------------------aaggatatgggtgaagctggaagccattttcctcagtgaactaacacaggaagagaaaaccatacactgcatgttctcatgtacatttgagaggtgagcaatgagaacacatggacgcagggagaggaacagcaca--cactggggcctgttgtgggagggtggtggtggggggagcattaggaaaaatacctaatgcatgccaggcttcatacctaggtgatgggttgataggtgcagcagaccaccatggcacatgtttacctatgtaacaaacctgcacatcctgcatgtgtacccta-aactt-a----------aaatgaaataaaattaaa----------agaCAAGGTTAAAGCATTATTTAAAATTAAATTAAAAGACAAGGTTAAACCATATTAAAGAACAATAATTAGATA--AAAGAAGGCTTTGGTTTACAAAATGCTGAAATAATACTTTTAATTTT-----------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     143952 792 -    383796 caaggttgcagaaaaacaggaatgcttttatgttcttggtggaaacataagtttgttccatgattgtagaagagagtatggtgattcctcaaagatttagaaccagaaataccatttgacccagtcatcctattacagggtatatacccaatggaatataaatcattctat-----------------ta-taaagatacatgcatgcgtatgttcattacagcactattcacaatagcaaagacatggaatc-acccaaatgcctatcaatggtgaactgg-ataaagaaaagatgatacatataccccatagaatattatgtagccataaaaataaatgaaatcaagtcctttgcttgatttcatttctttttatggctgcataaaaagatatggatgaagctctaagccattatcctcagcaaattaacaca-gaacagaaaaccaaacactatatgttctcacatataattgagagctgagcaatgagaacacatgggcaagaggaaaggaacaataca--cactggggcctgttgagggtgagcagtggtggtcgaagcattaggataaacagctaatgcatgccggggttaatacctagatgatgggttgacaggtgcagcaaaccaccatggcacacgtttacttatgtaacaaatctgcacatccagcacctgtaccctggagctt-a----------aaatt-aattaaattaaa----------agaCAAGCTTAAAGC--------------------------------------ATTTATGAAAAACAATTAGATAATAAAAAAGCCTTTGAGTTACAAAATCTTGAAACGATAGTTTTAATTTtgcttttaacatacatgc
i aotNan1.NW_018496904v1   I 4525 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e calJac3.chr4             30147357 50966 + 171630274 I
e cerAty1.NW_012002711v1     734816 819 +    766320 M

a score=960950.000000
s hg38.chr6_GL000254v2_alt  1086094 130 +   4827813 aagtcctttagtacagctctctttcagaggtgcagcttaattccctctcttaagtgtggcttggacttaatgatgcacttctgatatggcctgtctctgtgttcccacccaaatctcattttgaattgtc
s panTro5.chr6             30051738 130 + 175400573 aagtcctttagtacagctctctttcagaggtgcagcttaattccctctcttgagtgtggcttggacttaatgatgcacttctgatatggcctatctctgtgttcccacccaaatctcattttgaattgtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30282383 130 + 173848474 aagtcctttagtacagctctctttcagaggtgcagcttaattccctctcttgagtgtggcttggacttaatgatgcacttctgatatggcctatctctgtgttcccacccaaatctcattttgaattgtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6090804 130 +   6154872 aagtcctttagtacagctctctttcagaggtgcagcttaattccctctcttgagtgtggcttggacttaatgatgcacttctgatatggcctatctctgtgttcccacccaaatctcattttgaattgtc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74717987 130 + 122973662 aaatcctttaatactgttcccttccagaggtgcagcttaattccctctcttgagtgtggcttggacttaatgaggcacttctgatatggcctggttctgtgttcccacccaaatctcatcttgaattgtc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30386131 130 + 172585720 aagtcctttagtacaactctctttcagaggtgcagcttaattccctctcttgagtgtggcttggacttagtgatgcacttctgatagggcctggctctgtgttcccacccaaatctcattttgaattgtc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     151371 130 +   1495729 aaatcctttaatactgttcccttccagagatgcagcttaattccctctcttgagtgtggcttggacttaatgatgcacttctgatatggtctggctctgtgttcccacccaaatctcatcttcaattgtc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     735641 130 +    766320 aagtcctttagtacagctctctttcagaggtgcagcttaattccctctcttgagtgtggcttggacttagtgatgcacttctgatagggcctggctctgtgttcccacccaaatctcattttgaattgtt
i cerAty1.NW_012002711v1   M 819 C 0
s chlSab2.chr17            29221146 129 -  71996105 aagtcctttagtatagctctctttcagaggtgcagcttaatttcctctcttgagtgtggcttggacttaatgat-cacttctCatatggcctggctctgtgttcccacccaaatctcactgtgaattgtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      27965 130 +    273075 aagtcctttagtacagctctctttcagaggtgcagcttaattccctctcttgagtgtggcttggacttagtgatgcacttctgatagggcctggctctgtgttcccacccaaatctcattttgaattgtc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2945965 130 -   3067355 aagtcctttagtacagctctctttcagaggtgcagcttaattccctctcttgagtctggcttggacttaatgatgcacttctgatatggcctggctctgtgttcccacccaaatctcattttgaattgtc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           125571 130 +    187130 aaatcctttagtatttctcccttccagaggtgcagcttacatccatctcttgagtgtggcttagacttaatgatgtacttctgatatggcctggctctatattcccacctaaatttcatcttaaatttcc
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     389884 130 -   1771730 aaatcctttaatactgctcccttccagaggtgcagctttcttccctctcttgagcatggctcggacttaatgatgcacttctgatatggccttgctctgtgttcccacttgaatttcatcttgaattttc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     144744 130 -    383796 aaatcctttaatactggtcccttccagaggtgcagcttaattccctctcttgattgtggcttggatttaatgatgaacttctgatacggcctggctctgtgttcccacacaaatctcatcttgaattgtc
i aotNan1.NW_018496904v1   C 0 I 120
e canFam3.chr12            71532675   0 -  72498081 I
e calJac3.chr4             30147357 50966 + 171630274 I

a score=371183.000000
s hg38.chr6_GL000254v2_alt  1086224 64 +   4827813 atgcgaattctaat-ccccacatattggcggagggacttcatgggaggtgatcgaatcatgggga
s panTro5.chr6             30051868 64 + 175400573 atgcgaattctaat-ccccacatattggcggagggacttcatgggaggtgatcgaatcatgggga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30282513 64 + 173848474 atgcgaattctaat-ccccacatattggcggagggacttcatgggaggtgatcgaatcatgggga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6090934 64 +   6154872 atgcgaattctaat-ccccacatattggcggagggacttcatgggaggtgatcgaatcatgggga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74718117 64 + 122973662 atgtgaattgtaat-ccctacctattgggggagggacctcatgggaggtgattggatcatgggga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30386261 64 + 172585720 ttgtgaattgtaat-ccccacatattgggggagggacctgatgggaggtgattgaatcatgggga
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     151501 64 +   1495729 atgctaattgtaat-ccccacatactcggggagggacctcatgggaggtaactgaatcatgggga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     735771 64 +    766320 gtgtgaattggaat-ccccacatattgggggagggacctgatgggaggtgattgaatcataggaa
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29221275 64 -  71996105 ttgtgaattgtaat-ccccacatattgggggagggacctgatgggaggtgattgaatcatgggga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      28095 64 +    273075 ttgtgaattgtaat-ccccacatattgggggagggacctgatgggaggtgattgaatcatgggga
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2946095 64 -   3067355 ttgtgaattgtaat-cgccacatattgggggagggacctcatgggaggtgattgaatcatgggga
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           125701 65 +    187130 atgtgaattgtaataccccccatattgagcaaaggaccacctgggaggtgattggatcatgtgga
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     390014 64 -   1771730 atgtgaattgtaat-ccccccatattgagggaggtaccacatgggagatgattggatcatgggga
i cebCap1.NW_016107755v1   C 0 I 374
e canFam3.chr12            71532675  0 -  72498081 I
e aotNan1.NW_018496904v1     144874 120 -    383796 I
e calJac3.chr4             30147357 50966 + 171630274 I

a score=40030.000000
s hg38.chr6_GL000254v2_alt  1086288 15 +   4827813 tgattcccccaa------------------------------------------------------------------gct
s panTro5.chr6             30051932 15 + 175400573 tggttcccccaa------------------------------------------------------------------gct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30282577 15 + 173848474 tggttcccccaa------------------------------------------------------------------gct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6090998 14 +   6154872 tggtt-ccccaa------------------------------------------------------------------gct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74718181 15 + 122973662 cagcacccccat------------------------------------------------------------------gct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30386325 14 + 172585720 tggttccccaa-------------------------------------------------------------------gct
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     151565 81 +   1495729 tggttcccccaagctgttctaatgacagtaagtgaattctcatgagatctgttggtggaaatgtaaattgattcaaccact
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     735835 15 +    766320 tggttcccccaa------------------------------------------------------------------gct
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29221339 15 -  71996105 tggttcccccaa------------------------------------------------------------------gct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      28159 15 +    273075 tggttcccccaa------------------------------------------------------------------act
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2946159 15 -   3067355 tggttcccccaa------------------------------------------------------------------gct
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           125766 15 +    187130 tggtttccccat------------------------------------------------------------------gct
i saiBol1.JH378364         C 0 I 2166
e canFam3.chr12            71532675  0 -  72498081 I
e aotNan1.NW_018496904v1     144874 120 -    383796 I
e cebCap1.NW_016107755v1     390078 374 -   1771730 I
e calJac3.chr4             30147357 50966 + 171630274 I

a score=10505.000000
s hg38.chr6_GL000254v2_alt  1086303 2 +   4827813 gt
s panTro5.chr6             30051947 2 + 175400573 gt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30282592 2 + 173848474 gt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6091012 2 +   6154872 gt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74718196 2 + 122973662 gt
i nomLeu3.chr1a            C 0 I 1142
s rheMac8.chr4             30386339 2 + 172585720 gt
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     151646 2 +   1495729 gt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     735850 2 +    766320 gt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29221354 2 -  71996105 gt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      28174 2 +    273075 gt
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2946174 2 -   3067355 gt
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr12            71532675 0 -  72498081 I
e saiBol1.JH378364           125781 2166 +    187130 I
e aotNan1.NW_018496904v1     144874 120 -    383796 I
e cebCap1.NW_016107755v1     390078 374 -   1771730 I
e calJac3.chr4             30147357 50966 + 171630274 I

a score=824204.000000
s hg38.chr6_GL000254v2_alt  1086305 224 +   4827813 GGAAGTCAGCGGTTGAACctatttttcctaatgctcccctcagcactgccctcccataataggctccagtgtgtgatgtt-cctctccctgtgtccatgtgttctcattgctcagctcccagttacaagtgagaacatgtggtgtttggtttcctgttcctgtg---------ttagcttgctgaggataatggcttccagcttcatccatatccctgcaaaggacttgatctc
s panTro5.chr6             30051949 224 + 175400573 GGAAGTCAGCGGTTGAACctatttttcctaatgctcccctcagcactgccctcccataataggctccagtgtgtgatgtt-cctctccctgtgtccatgtgttctcattgctcagctcccagttataagtgagaacatgtggtgtttggtttcctgttcctgtg---------ttagcttgctgaggataatggcttccagcttcatccatatccctgcaaaggatttgatctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30282594 224 + 173848474 GGAAGTCAGCGGTTGAACctatttttcctaatgctcccctcagcactgccctcccataataggctccagtgtgtgatgtt-cctctccctgtgtccatgtgttctcattgctcagctcccagttataagtgagaacatgtggtgtttggtttcctgttcctgtg---------ttagcttgctgaggataatggcttccagcttcatccatatccctgcaaaggatttgatctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6091014 224 +   6154872 GGAAGTCAGCGGTTGAACctatttttcctaatgctcccctcagcactgccctcccataataggctccagtgtgtgatgtt-cctctccctgtgtccacgtgttctcattgctcatctcccagttataagtgagaacatgtggtgtttggtttcctgttcctgtg---------ttagcttgctgaggataatggcttccagcttcatccatatccctgcaaaggatttgatctc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30386341 223 + 172585720 GGAACTCAGTGGTTGAACctgtttttcctaatgctcccctcagcactaccctcccataataggcccccgtgtgtg-tttt-tctctccctgtgtccatgtgttctcattgctcagctcacaactataagtgagaacatgcggtgcttggtttctcgttcctgtg---------ttagcttgctgaggataatggcttccagcttcatccatgtcccggcaaaggacttgatctc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     151648 231 +   1495729 ggaagtcaatgATTGAACctatttttcctaatgatccccccaccaccaccctccaccaacaggcccatgtgtgt--tgtt-cctctccctgtgtccatgtgttctcgttgctcagctcccaattataagtgagaacatgcggtgtttggttttctgttactctgttagttcgtttagtttgttgaggataatggcttccagcttcatccatattcctgcaaaggacttgatctt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     735852 223 +    766320 GGAAGTCAGTGGTTGAACctgtttttcctaatgctcccctcagcactgccctcccataataagccctggtgtgtg-tttt-tctctccctgtgtccatgtgttctcattgctcagctcacaactatacgtgagaacatgcggtgtttggtttctcgttcctgtg---------ttagcttgctgaggataatggcttccagcttcatccatgtcccggcaaaggacttgatctc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29221356 223 -  71996105 GGAAGTCAGTGGTTGAACctgtttttcttaatgctcccctcagcactgccctcccataataggccccggtgtgtg-tttt-tctctccctgtgtccatgtgttctcattgctcagctcacaactataagtgagaacatgcggtgttttgtttctcgttcctgtg---------ttagcttgctgaggataatggcttccagcttcatccatgtcccggcaaaggacttgatctc
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012101121v1      28176 223 +    273075 GGAAGTCAGTGGTTGAACCCGtttttcctaatgctcccctcagcactgccctcccataataggccccggtgtgtg-tttt-tctctccctgtgtccatgtgttctcattgctcagctcacaactgtaagtgagaacatgcggtgtttggtttctcgttcctgtg---------ttagcttgctgaggataacggcttccagcttcatccatgtcccggcaaaggacttgatctc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2946176 224 -   3067355 GGAAGTCAGTGGTTGAaactgtttttcctaatgctcccctcagcactgccctcccataataggccccggtgtgtg-ttttgcctctccctgtgtccatgtgttctcgttgctcagctcacaactttaagtgagaacatgcggtgtttggtttctcattcctgtg---------ttagtttgctgaggataacggcttccagcttcatccatgtcccagcaaaggacttgatctc
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e saiBol1.JH378364           125781 2166 +    187130 I
e aotNan1.NW_018496904v1     144874 120 -    383796 I
e cebCap1.NW_016107755v1     390078 374 -   1771730 I
e calJac3.chr4             30147357 50966 + 171630274 I
e nomLeu3.chr1a            74718198 1142 + 122973662 I

a score=139132.000000
s hg38.chr6_GL000254v2_alt  1086529 45 +   4827813 attcctttttatggctgcataatattccatggtgtatatgtacca
s panTro5.chr6             30052173 45 + 175400573 attcctttttatggctgcataatattccatggtgtatatgtacca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30282818 45 + 173848474 attcctttttatggctgcataatattccattgtgtatatgtacca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6091238 45 +   6154872 attcctttttatggctgcataatattccatggtgtatatgtacca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30386564 45 + 172585720 attcctttttatggctgcataatattccatggtgtatatgtacta
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     151879 45 +   1495729 gtgcctttttagggctgcataatattccatggtgtatatatacAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     736075 45 +    766320 attcctttttatggctgcataatattccatggtgtatatgtacca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29221580 45 -  71996105 ttccttttttatggctgcataatattccatggtgtatatgtacca
i chlSab2.chr17            I 1 C 0
s colAng1.NW_012115566v1    2946400 45 -   3067355 attcctttttatggctgcataatattccatggtgtatatgtacca
i colAng1.NW_012115566v1   C 0 C 0
e canFam3.chr12            71532675  0 -  72498081 I
e saiBol1.JH378364           125781 2166 +    187130 I
e aotNan1.NW_018496904v1     144874 120 -    383796 I
e cebCap1.NW_016107755v1     390078 374 -   1771730 I
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399  0 +    273075 C
e nomLeu3.chr1a            74718198 1142 + 122973662 I

a score=70193.000000
s hg38.chr6_GL000254v2_alt  1086574 19 +   4827813 tataaggggattttcccca
s panTro5.chr6             30052218 19 + 175400573 tataaggggattttcccca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30282863 19 + 173848474 tataaggggattttcccca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6091283 19 +   6154872 tataaggggattttcccca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30386609 19 + 172585720 tataaggggattttcccca
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     151924 19 +   1495729 tattagggatttgtcccca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     736120 19 +    766320 tataaggggattttcccca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29221625 19 -  71996105 tataaggggatgttcccca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2946445 19 -   3067355 tataaggggattttcccca
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           127947 15 +    187130 tataaggggttcccc----
i saiBol1.JH378364         I 2166 C 0
s aotNan1.NW_018496904v1     144994 19 -    383796 tataaggggcttttctctg
i aotNan1.NW_018496904v1   I 120 C 0
e canFam3.chr12            71532675  0 -  72498081 I
e cebCap1.NW_016107755v1     390078 374 -   1771730 I
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399  0 +    273075 C
e nomLeu3.chr1a            74718198 1142 + 122973662 I

a score=956864.000000
s hg38.chr6_GL000254v2_alt  1086593 192 +   4827813 cttcactctgcatttttctctcctgccaccatgtgaagaatgacatgtttgcttccccttctgccatgattgtaagtttcctggggcagcctcctcagccatgcacaactgtgagtcaactaaacctcttgcctttataaattacccagtctcaggtatttctttatagcagtgtgagaacagactaataca
s panTro5.chr6             30052237 192 + 175400573 cttcactctgcatttttctctcctgccaccatgtgaagaatgacatgtttgcttccccttctgccatgattgtaagtttcctggggcagcctcctcagccatgcacaactgcgagtcaactaaacctcttgcctttataaattacccagtctcaggtatttctttatagcagtgtgagaacagactaataca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30282882 191 + 173848474 cttcactctgca-ttttctctcctgccaccatgtgaagaatgacatgtttgcttccccttctgccatgattgtaagtttcctggggcagcctcctcagccatgcacaactgcgagtcaactaaacctcttgcctttataaattacccagtctcaggtatttctttatagcagtgtgagaacagactaataca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6091302 191 +   6154872 cttcactctgcatttttctctcctgccaccatgtgaagaatgacatgtttgcttccccttctgccatgattg-aagtttcctggggcagcttcctcagccatgcacaactgcgagtcaactaaacctcttgcctttataaattacccagtctcaggtatttctttatagcagtgtgagaacagactaataca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30386628 191 + 172585720 cttcactctgcatttctctctcctgtcaccatgtgaagaaggacatgtttgcttccccttctgccatgattgtaagtttcctggggcagcctcctcagccttgcagaactatgagtcaattgag-ctctttcctttataaactacccagtcttaggtatttctttatagcagtgtgagaacagactaataca
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     151943 192 +   1495729 cttcactctgcttttctctctcctgccaccatgtgaagaaggacatgtttgcgtccacttctgccatgattgtaagtttcctggggtaccctcctcatccatgtagaactgtgagtcaattaaacctcttttctttttaaattacccagtctcaggtatttctttacagcagtgagagaacagaatagtata
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     736139 191 +    766320 cttcactctgcatttctctctcctgccaccatacgaagaaggacatgtttgcttccccttctgccatgattgtaagtttcctggggcagcctcctcagccatgcagaactatgagtcaatttag-ctctttcctttataaactacccagtcttaggtatttctttatagcagtgtgagaacggactaataca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29221644 191 -  71996105 cttcactctgcatttctctctcctgccaccatgcgaagaaggacatgtttgcttccccttctgccatgattgtaagtttcctggggcagcctcctcagccatgcagaactatgagtcaactgag-ctctttcctttataaactacccagtcttaggtatttctttatagcagtgtgagaacagacgaataca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2946464 191 -   3067355 cttcgctctgcatttctctctcctgccaccatgcgaagaaggacatgtttgcttccccttctgccatgattgtaagtttcctggggcagcctcctcagccatgcagaactgcgagtcaattgag-ctctttcctttataaactacccagtcttaggtatttctttatagcagtgtgagaatacactaataca
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           127962 185 +    187130 cttcactctgcatttctctctcctaccaccacatgaa---ggatgtgtttgcttccacccctgccatgattgtaagtttcctggagc-gtcttctcagtcatgcagcactgtgagtcaattaaacctctttcct---taaataacacagtctcaggtattcctttacagcattatgagaatgagctagtaca
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     390452 185 -   1771730 cttcactctgcatttccctctcctaccacaatatgaa-------gtatttgcttccacttctgccatgattgtaagtttcctggggcagccttctcagccatggagaactgtaagtcaattaaaactctttcctttataaataacccactctcaggtatttctttatagcactgtgagaaccagctaataca
i cebCap1.NW_016107755v1   I 374 C 0
s aotNan1.NW_018496904v1     145013 192 -    383796 cttcactctgcatttctctctcctgccactatgtgaagaaggacgtgtttgcttctacttctgccatgattgtaagtgtcctggggcagcctcctcagccatgtagaactgtgagtcaattaaacttccttttcttataaattacccagtctcaggtatttctttatagcagtgtgagaatgagctaatgca
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12            71532675   0 -  72498081 I
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399   0 +    273075 C
e nomLeu3.chr1a            74718198 1142 + 122973662 I

a score=73142.000000
s hg38.chr6_GL000254v2_alt  1086785 11 +   4827813 Acttctaactg
s panTro5.chr6             30052429 11 + 175400573 Acttctaactg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30283073 11 + 173848474 Acttctaactg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6091493 11 +   6154872 Acttctaactg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30386819 11 + 172585720 Acttctaactg
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     152135 11 +   1495729 Acttctaacta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     736330 11 +    766320 Acttctaactg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29221835 11 -  71996105 Acttctaactg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2946655 11 -   3067355 Acttctaactg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           128147 11 +    187130 Acttctaacag
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     390637 11 -   1771730 acttccaacag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     145205 11 -    383796 acttctaactg
i aotNan1.NW_018496904v1   C 0 C 0
s canFam3.chr12              979377 11 +  72498081 acttctaactg
i canFam3.chr12            I 42980 C 0
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399  0 +    273075 C
e nomLeu3.chr1a            74718198 1142 + 122973662 I

a score=3062534.000000
s hg38.chr6_GL000254v2_alt  1086796 467 +   4827813 atagagtaatgttgacat------------------aacagtttgtgactctgggtgta-gaatgtgaaactcactatggcttccacct------------------------------tctctctctctgtctctg----------------ggatcatgagctcttggggac-ccagctgctgtgccataagcagccctgcaggaaggtccatgtggctaagaactgaggccccctgggaccagacagcaaggaact-agg-cttttc-------------------caacagccatgtgactaagccatgtttcacgtgaatccc-tagccccagtgaagccctcagacgatgcagccctaggctgaca---------------actggactgcaaccttgtgagaggccctgagccagaagcactcagg--aaaaccgctcctggattcctgaccattagaaactgtgggagatgatgaatatttgttgttttgagctgctaagttttacataatttgttacacaatagtaaataactaatacaTTTTCACAAGA-GAGGATGTATTAT
s panTro5.chr6             30052440 467 + 175400573 atagagtaatgctgacat------------------aacagtttgtgactctgggtgta-gaatgtgaaactcactatggcttccacct------------------------------tctctctctctgtctctg----------------ggatcatgagctcttggggac-ccagctgctgtgccataagcagccctgcaggaaggtccatgtggctaagaactgaggccccctgggaccagacagcaaggaact-agg-cttttc-------------------caacagccatgtgactaagccatgtttcacgtgaatccc-cagccccagtgaagccctcagacgatgcagccctaggctgaca---------------actagactgcaaccttgtgagaggccctgagccagaagcactcagg--aaaaccgctcctggattcctgaccattagaaactgtgggagatgatgaatatttgttgttttgagctgctaagttttacataatttgttacacaatagtaaataactaatacaTTTTCACAAGA-GAGGATATATTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30283084 467 + 173848474 atagagtaatgctgacat------------------aacagtttgtgactctgggtgta-gaatgtgaaactcactatggcttccacct------------------------------tctctctctctgtctctg----------------ggatcatgagctcttggggac-ccagctgctgtgccataagcagccctgcaggaaggtccatgtggctaagaactgaggccccctgggaccagacagcaaggaact-agg-cttttc-------------------caacagccatgtgactaagccatgtttcacgtgaatccc-cagccccagtgaagccctcagacgatgcagccctaggctgaca---------------actggactgcaaccttgtgagaggccctgagccagaagcactcagg--aaaaccgctcctggattcctgaccattagaaactgtgggagatgatgaatatttgttgttttgagctgctaagttttacataatttgttacacaatagtaaataactaatacaTTTTCACAAGA-GAGGATATATTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6091504 466 +   6154872 atagagtaatgctgacat------------------aacagtttgtgactctgggtgta-gaatgtgaaactcactatggcttccacct------------------------------tctctctctctgtctctg----------------ggatcatgagctcttggggac-ccagctgctgtgccataagcagccctgcaggaaggtccatgtggctaagaactgaggccccctgggaccagacagcaaggaact-agg-cttttc-------------------caacagccatgtgactaagccatgtttcatgtgaatccc-cagccccagtgaagccctcagacgatgcagccctaggctgaca---------------actggactgcaaccttgtgagaggccctgagccagaagcactcagg--aaaaccgctcctggattcctgaccattagaaactgtgggagatgatgaatatttgttgttttgagctgctaagttttacataatttgttacacaatagtaaataactaatacaTTTTCACAAGA--AGGATGTATTAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74719340 466 + 122973662 atagaataatgctgacat------------------aacagtttgtgactctgggtgta-gaacataaaactcactgcggcttccacct------------------------------tctctctctctgtctctg----------------ggatcatgagctctggggaaagccagctgctgtgccacaagcagccctgcaggaaggtccatgtggctaagaactgaagccttctgggaacagacaacaaggaact-aggccttttc-------------------caacagccatgtgactgatccatgtttcttgtgaatcct-cagccccagtgtagccctcagatgatgcagcccttggctgaca---------------actggactgcaacctcgtgagaggccctgaggaggaagtattcagg--gaaacctttcctgggttcctaaccattggaaactgtgggagatgatgaatatttgttgttttga---gcaaagttttacataatttgttatgcaatagtaaataactaatacaTTTTCACAAGA-GAGGATGTATTAT
i nomLeu3.chr1a            I 1142 C 0
s rheMac8.chr4             30386830 467 + 172585720 atagagtaatgctgacat------------------aacagtttgtgactctgggtgta-gaatatgaaactcactgtggcttccacct------------------------------tctctctctctgtctctg----------------ggatcatgagctctgggggaagccagctgctgtgccataagcagccctgcaggaaggtccatgtggctaagaactgaggctgcctgggaccagaaaacaaggaact-aggccttttc-------------------caacagccatgtgagtgagccatgtttcaagtgaatccc-cagccccagtgaagccctcagacaatgcagtcctaggctgaca---------------actggactgcaaccttgtgagaggccctgagccagaagcattcagg--gaaacctctcctggattgctaaccattagaaactgtgggagatgatgaatatttgttgttttgagctgctaagttttacataatttgttatgcaatagtaaataactaatacaTTTTCACAAG---AGGATGTATTAT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     152146 469 +   1495729 atagagtaatgctgacat------------------agcagtttgcaagtttgggtgta-gaacataaaactcactgtggcttccacct------------------------------tctctctctctgtctctg----------------ggatcatgaactctgggggaatccagctgctgtgccataagtggccctgcaggaaggttcacgtgactgagaactgaggccttctaggaacagacaacaaggaact-aggccttttc-------------------caagagccatgtgactgagccatgtttcatgtgaatgct-cagccccagtgaagcccttagatgatgcagcccttgactgaca---------------actggactgcaaccttgtgagaggtcctgagccagaagcactcagg--gaaacctctcctggattcctgatcattggaaactgtgagagatgaggaatatttgttgttttaagctgctaagttttacataatttgttatataatagtaaataactaatacaTTTTCACAAGA-CAGGGTGTATTAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     736341 469 +    766320 atagagtaatgctgacat------------------aacagtttgtgactctgggtgta-gaatatgaaactcactgtggcttccacct----------------------------tctctctctctctgtctctg----------------cgatcatgagctctgggggaagccagctgctgtgccataagcagccctgcaggaaggtccatgtggctaagaactgaggctgcctgggaccagaaaacaaggaact-aggccttttc-------------------caacagccatgtgagtgagccatgtttcaagtgaatccc-cagccccagtgaagccctcagacaatgcagtcctaggctgaca---------------actggactgcaaccttgtgagaggccctgagccagaagcattcagg--gaaacctctcctggattcctgaccattagaaactgcgggagatgatgaatatttgttgttttgagctgctaagttttacataatttgttatgcagtagtaaataactaatacaTTTTCACAAG---AGGATGTATTAT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29221846 469 -  71996105 atagagtaatgctgacat------------------aacagtttgtgactctgggtgta-gaatgtgaaactcactgtggcttccacct----------------------------tctctctctctctgtctcta----------------ggatcatgagctctgggggaatccagctgctgtggcataagcagccctgcatgaaggtccatgtggctaagaactgaggctgcctgggaccagagaacaaggaact-aggccttttc-------------------caacagccatgtgagtgagccatgtttcaagtgaatccc-cagccccagtgaagccctcagacaatgcaggcctaggctgaca---------------accggactgcaaccttgtgagaggccctgagccagaagcattcagg--gaaacctctcctggattcctgaccattagaaactgtgggagatgatgaatatttgttgttttgagctgctaagttttacataatttgttatgcagtagtaaataactaatgcaTTTTCACAAG---AGGATGTATTAT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2946666 469 -   3067355 atagagtaatgctggcat------------------aacagtttgtgactctgggtgta-gaatgtgaaactcactgtggcttccacct----------------------------tctctctctctctgtctctg----------------ggatcacgagctctgggggaagccagctgctgtgccataagcagccctgcaggaaggtccatgtggctaagaactgaggctgcctgggaccagaaaacaaggaact-aggccttttc-------------------caacagccatgtgagtgagccatgtttcaagtgaatccc-tagccccagtgaagccctcagacaatgcagccctaggctgaca---------------actggactgcaaccttgtgagaggccctgagccagaagcattcagg--gaaacctctcctggatttctgaccattagaaactgtgggagatgatgaatatttgttgttttgagctgctaagttttacataatttgttatgcagtagtaaataactaatacaTTTTCACAAG---AGGATGTATTAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           128158 460 +    187130 atagcacaatgatgacat----------------------gtttgtgactttggatgta-gaacataaaactcactgcggcttctactt------------------------------tctctctctctgtctctg----------------ggatcatgagctctgggggaagccagctgctgtgctataagcagccctgcaggaaggtccatgtggctaagaactgaggccttctgggaccagacaacaagaaact-agaccttttc-------------------caacagccatgtgactgagccatgtttcatgtgaatcct-cagccccagtgaaacattcagatgatgcagccctcaactgaca---------------actggactacagccttgtgagaggccctcagccagaagcactcagg--gaaacctctcctggattcctgactgttggaaactatgggagatgatgaatatttgttgttttgagatgctaagtcttacataatttgttacacgatagtacataactaat----TTTCA-AAGA-AAGTACATATTAT
i saiBol1.JH378364         C 0 C 0
s cebCap1.NW_016107755v1     390648 462 -   1771730 atacagtaatgatgacat------------------gacagttcgtgactctggatgta-gaacataaaactcactgcggcttccactt--------------------------------tctctctctgtctctg----------------ggatcatgagctgtgggggaagccagctgctgtgctataatctgccctgcaggaaggtccatgtggctaagaactgaggacttctgagaccagacaacaagaaact-aggccttttc-------------------caacagccatgtgactgagccatgtttcatgtgaatcct-cagccccagtgaaacactcagatgatggagccct-ggctgaca---------------actggactacaactttgtgagaggaactcagccagaagcactcagg--gaaacctctcctggattcctgaccattggaaactgtgggagatgatgaatatttgttgttttgagctgctaagttttacataattcgttatgcaatagtgaataacgaat----TTTCACAAGA-AAGTATGTATTAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     145216 513 -    383796 atagagtaatgatgacatatcttctacacccagagcgacagtttgtcattctgggtgta-gaagataaaagtcactgtggcttctacattttctctctctctctctctctctctctctctctctctctctctctctg----------------ggatcatgagctctaggaaaagccagctgctgtcccataagctgccctgcaggaaggtccatgtggctaagaactgaggacttctggaaccagacaacaagaaact-aggccttttc-------------------caacagccatgtgactgagccatgtttcatgtgaatcct-cagccccagtgaaacactcagatgacggagccct-ggctgaca---------------actggactacaaccttgtgagaggaactcagccagaagcactcagg--gaaacctctcctggattcctgactgttggaaactgtgggggatgatgaatatctgttgttttgagttgct-tgttttaaataatttgttatgcaatagtaaataactgataGA-TTTTC-ATGA-GAGGATGGATTAT
i aotNan1.NW_018496904v1   C 0 C 0
s canFam3.chr12              979388 547 +  72498081 atagaa-aaggctgatgt------------------gatggtgtgtgacccaggacctaggaacataaaacacattgcagcttctacct-----ggctttttctctctctttttgtctgtctgtctctctgtttctgtatctgtctctgtctctggttacttgcactgggggaa-gaagctacctagttattagctacctaatggaaaagtccacacagctaggaactgaggccccttgggaccatctgggaaggaaatgaggcctcttcctcatttcctcatttccctcaacagccatgtgagggagccttatgtcctaggaatccctcagccccagtcaagccatcagatgatgcagtcct-gtctgacaacccagtcctgtctgacttgactgcaacccagagagaggccctgagacagaagcactcaggtataagcctctcctggattcctgaccctgggaaactgtgggacacaatatatatttgttgttctgagctgctatgctgtggataatttgttaggcaccagtacataactattataGAgtccaaagaagagaatgaagtat
i canFam3.chr12            C 0 C 0
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399   0 +    273075 C

a score=549039.000000
s hg38.chr6_GL000254v2_alt  1087263 93 +   4827813 TACACATTAATTTGCATTTGCTCTAAATTTATCATCATCA-TATTACTAtttttgagacagggtcttgctctgtcacccaggctggagtgcagt
s panTro5.chr6             30052907 93 + 175400573 TACACGTTAATTTGCATTTGCTCTAAATTTATCATCATCA-TATTACTAtttttgagacagggtcttgctgtgtcacccaggctggagtgcagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30283551 93 + 173848474 TACACGTTAATTTGCATTTGCTCTAAATTTATCATCATCA-TATTACTAtttttgagacagggtcttgctgtgtcacccaggctggagtgcagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6091970 92 +   6154872 TACACGTTAA-TTGCATTTGCTCTAAATTTATCATCATCA-TATTACTAtttttgagacagggtcttgctctgtcacccaggctggagtgcagt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74719806 94 + 122973662 TACACGTTAAATTGCATTTGCTCTAAATGTATCATCATCATTATTATTAtttttgagacagggtctcactctatcacccaggctggagtgcagt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30387297 93 + 172585720 TACACGTTAATTTGCACTTGCTCTAAATTTATCATCATCA-TATTACTAtttttgagacagggtctcactctgtcacccaggctggagtgcagt
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     152615 94 +   1495729 TACATGTTAGTTTGCATTTACTCTAAATTTATCATCATCATTATTATTAtttctaagacaggatctcactctgtcacccaggctggagtgcggt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     736810 93 +    766320 TACACGTTAATTTGCATTTGCTCTAAATTTATCATCATCA-TATTACTAtttttgagacagggtctcactctgtcacccaggctggagtgcagt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29222315 93 -  71996105 TACACGTTAATTTGCATTTGCTCTAAATTTATCATCATCA-TATTACTAtttttgagacagggtctcactctgtcacccaggctggagtgtggt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2947135 93 -   3067355 TACACATTAATTTGCATTTGCTCTAAATTTATCATCATCA-TATTACTAtttttgagacagggtctcactctgtcacccgggctggagtacagt
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378364           128618 86 +    187130 TACACATTAATTTGCATTTGCTCTAAATTTATCATCA--------GTTAtttttgagacagggtcactttctgtcacccaggctggggtgcagt
i saiBol1.JH378364         C 0 N 0
s cebCap1.NW_016107755v1     391110 88 -   1771730 TACACATTAATTTGCATTTGCTCTAAATTTATCATCA------TTATTAtttttgagatggggtcacgctctgtcacccaggctggagtgcagt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     145729 94 -    383796 TACACATTAATTTGCATATGCTCTAAATTTGTGATCATCAATCTTGTTAtttttgagacagtgactcactctgtcacccacgatggaatgtagt
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12              979935  0 +  72498081 C
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399  0 +    273075 C

a score=86925.000000
s hg38.chr6_GL000254v2_alt  1087356 13 +   4827813 ggcatgatcacca
s panTro5.chr6             30053000 13 + 175400573 ggcatgatcacca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30283644 13 + 173848474 ggcatgatcacca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6092062 13 +   6154872 ggcatgatcacca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74719900 13 + 122973662 agcatgatcacca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30387390 13 + 172585720 ggcatgatcatca
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     152709 13 +   1495729 ggcatgatcacca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     736903 13 +    766320 ggcatgatcatca
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29222408 13 -  71996105 ggcatgatcatca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2947228 13 -   3067355 ggcatgatcagca
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            11144 13 +    515838 ggcatgatcacca
i saiBol1.JH378341         N 0 C 0
s cebCap1.NW_016107755v1     391198 13 -   1771730 ggcatgatcacca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     145823 13 -    383796 ggcatgatcccca
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12              979935  0 +  72498081 C
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399  0 +    273075 C

a score=305585.000000
s hg38.chr6_GL000254v2_alt  1087369 47 +   4827813 tgcactgcagtgtcgacctcctgggctcaagggatcctctgatctca
s panTro5.chr6             30053013 47 + 175400573 tgcactgcagtgtcgacctcctgggctcaagggatcctctgatctca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30283657 47 + 173848474 tgcactgcagtgtcgacctcctgggctcaagggatcctctgatctca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6092075 47 +   6154872 tgcactgcagtgtcgacctcctgggctcaagggatcctctgatctca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74719913 47 + 122973662 tgcactgcagtgtcaacctgctgggctcaagggaccctctgatctca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30387403 47 + 172585720 tacactgcagtgtcaacctcctgggctcaagggatcctctgatctca
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     152722 47 +   1495729 tgcactgcagtgtcgacctgctgggctcaaaggaccctctgatctca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     736916 47 +    766320 tacactgcagtgtcaacctcctgggctcaagggatcctctgatctca
i cerAty1.NW_012002711v1   C 0 I 5905
s chlSab2.chr17            29222421 47 -  71996105 tacactgcagtatcaacctcctgggctcaagggatcctctgatctca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2947241 47 -   3067355 tgcactgcagtgtcaacctcctgggctctagggatcctctgatctca
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            11157 47 +    515838 tgcactgcagtgcccacctcctgggctcaaggggtcctctgacctca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     391211 47 -   1771730 tgcactgcagtgtcgaccttctgggctcaagggatcctgtgacctca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     145836 47 -    383796 tgcactgcagtgccgacctcctggactcaaggggtcctctgacctca
i aotNan1.NW_018496904v1   C 0 C 0
s canFam3.chr12              979935 17 +  72498081 tgcactttaatttcgat------------------------------
i canFam3.chr12            C 0 C 0
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399  0 +    273075 C

a score=221358.000000
s hg38.chr6_GL000254v2_alt  1087416 47 +   4827813 gcctcttgagtagctgggactataggcatg-aattaacatgcctggct
s panTro5.chr6             30053060 47 + 175400573 gcctcttgagtagctgggactataggcatg-aattaacatgcctggct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30283704 47 + 173848474 gcctcttgagtagctgggactataggcatg-aattaacatgcctggct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6092122 47 +   6154872 gcctcttgagtagctgggactataggcatg-aattaacatgcctggct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74719960 47 + 122973662 gcatcctgagtagctgggactacaggcatg-aaccaccatgcctggct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30387450 47 + 172585720 acctcctgagtagctgggacagcaggcatg-aattaacatgcctggct
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     152769 47 +   1495729 gcatcctgagtagctggggctacaggcatg-aaccaccatgcctgact
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29222468 48 -  71996105 acctcctgagtagttgggacagcaggcatgaaattaacatgcctagct
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2947288 47 -   3067355 acctcctgagtagctgggacagcaggcatc-aattaacatgcctggct
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            11204 47 +    515838 gcctcctgagtagctgggactacaggcatg-aactaccatgcctggct
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     391258 47 -   1771730 gcctcctgagtatctgggactataggcacg-aaccaccatgcctggct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     145883 47 -    383796 gcctcctgagtagctgggatgacaggcatg-aaccaccatacctggct
i aotNan1.NW_018496904v1   C 0 C 0
s canFam3.chr12              979952  5 +  72498081 -------------------------------------------tggct
i canFam3.chr12            C 0 C 0
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399  0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I

a score=355298.000000
s hg38.chr6_GL000254v2_alt  1087463 70 +   4827813 aattttcta------a----tttttttgtagagatgggggtttcaccatgttgcccaggctgatcttgaacttctggagt
s panTro5.chr6             30053107 70 + 175400573 aattttcta------a----tttttttgtagagatgggggtttcaccatgttgcccaggctgatcttgaacttctggagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30283751 70 + 173848474 aattttcta------a----tttttttgtagagatgggggtttcaccatgttgcccaggctgatcttgaacttctggagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6092169 69 +   6154872 aattttcta------a----tttttttgtagagatgggggtttcaccatgttgcccaggctgatcttgaacttct-gagt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74720007 69 + 122973662 aattttcta------a-----ttttttgtagagatgggggttttgccatgttgcccaggctgatcttgaacttctggagt
i nomLeu3.chr1a            C 0 I 3
s rheMac8.chr4             30387497 76 + 172585720 aattttctatttttta----ttcttttgtagagatgggggtttcaccatattgcccaggctgatcttgaacttctgcagt
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     152816 70 +   1495729 aattttcta------a----cttttttgtagggatgagggcttcaccatgttgcccaggctgatcttgaacttctgcagt
i macNem1.NW_012012100v1   C 0 I 6258
s chlSab2.chr17            29222516 76 -  71996105 aattttctatttttta----ttcttttgtagagatgggagtttcaccatattgcccaggctaatcttgaacttctgcagt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2947335 76 -   3067355 aattttctatttttta----ttcttttgtagagatgggggtttcaccatgttgcccaggctgatcttgaacttctgcagt
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            11251 70 +    515838 aattttctc------a----ttttttggcagagatggggatttgaccatgtttcccaggttgatcttgaacttctggagt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     391305 74 -   1771730 aattttcta------atttttttttttgtagagatgggggtttgaccatgtctcccaggctgatcttgaacttttggaat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     145930 70 -    383796 aattttcta------a----tttttttgtagagatggggctttgaccatgtttcccaggctgatcttgaacttctggagt
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12              979957  0 +  72498081 C
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399  0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I

a score=185988.000000
s hg38.chr6_GL000254v2_alt  1087533 40 +   4827813 ---caaatctgccttcctctgccttcaacagtgctaggattgc
s panTro5.chr6             30053177 40 + 175400573 ---caaatctgccttcctctgccttcaacagtgctaggattgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30283821 40 + 173848474 ---caaatctgccttcctctgccttcaacagtgctaggattgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6092238 40 +   6154872 ---caaatctgccttcctctgccttcaacagtgctaggattgc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74720079 40 + 122973662 ---caaatctgccttcctcttccttccacagtgctaggatggc
i nomLeu3.chr1a            I 3 C 0
s rheMac8.chr4             30387573 40 + 172585720 ---caaagctgccttcctctgccttcgaaagtgctaggactgc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     159144 40 +   1495729 ---caaatttgccttcctctgccttccacggtgctaggatgac
i macNem1.NW_012012100v1   I 6258 I 3367
s chlSab2.chr17            29222592 40 -  71996105 ---caaagctgccttcctctgcgttcgaaagtgctaggactgc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2947411 40 -   3067355 ---caaagctgccttcctctgccttcgaaagtgctaggactgc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            11321 43 +    515838 caatggatccaccttcctctgccttccgcagtggtaaaattgc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     391379 43 -   1771730 caacaaatctgccttcctctgccttccacagtactaatattgc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     146000 43 -    383796 caatggatccaccttcctctgccttccacagtggtaaaattgc
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12              979957  0 +  72498081 C
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399  0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I

a score=65619.000000
s hg38.chr6_GL000254v2_alt  1087573 15 +   4827813 aggcgtgagccacca
s panTro5.chr6             30053217 15 + 175400573 aggcatgagccacca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30283861 15 + 173848474 aggcatgagccacca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6092278 15 +   6154872 aggcgtgagccacca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74720119 15 + 122973662 aggtgtgagccacca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30387613 15 + 172585720 aggcgtgagacacca
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29222632 15 -  71996105 aggcgtgagacacca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2947451 15 -   3067355 aggggtgagacacca
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            11364 15 +    515838 aggcatgagccacca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     391422 15 -   1771730 aggcgtgagccacca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     146043 15 -    383796 aggcatgggacacca
i aotNan1.NW_018496904v1   C 0 C 0
e canFam3.chr12              979957  0 +  72498081 C
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399  0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I

a score=37411.000000
s hg38.chr6_GL000254v2_alt  1087588 8 +   4827813 cacctggt
s panTro5.chr6             30053232 8 + 175400573 cacctggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30283876 8 + 173848474 cacctggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6092293 8 +   6154872 cacctggt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74720134 8 + 122973662 cacctggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30387628 8 + 172585720 cacctgCT
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29222647 8 -  71996105 cacctggt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2947466 8 -   3067355 tacctggt
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            11379 8 +    515838 cacctggc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     391437 8 -   1771730 caccaggc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     146058 8 -    383796 cacctggc
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16983877 8 -  18854210 cacttgtt
i otoGar3.GL873550         N 0 C 0
e canFam3.chr12              979957 0 +  72498081 C
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399 0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I

a score=1585501.000000
s hg38.chr6_GL000254v2_alt  1087596 306 +   4827813 cTAAATtaactataagatattaaacat-gtaacttagttttaaaaggaaaggagaatttccacggct----gaagaggatgtattttattactattcacaatgatcactttacttgaacttcaatttccaactgtgtccaaattaaacacaaaaggaagaTCCAGCCCTTCCTGGGCTGattctatcatggctcccaacaaccagctcctggtcattcaccttcccccagttattcaacc-aactctaatgtaggtgctgctgtgaagggatttagcagatataattaagggcctcaattagttgactttag
s panTro5.chr6             30053240 306 + 175400573 cTAAATtaactataagatattaaactt-gtaacttagttttaaaaggaaaggagaagttccacggct----gaagaggatgtattttattactattcacaatgatcactttacttgaacttcaatttccaactgtgtccaaattaaacacaaaaggaagaTCCAGCCCTTCCTGGGCTGattctatcatggctcccaacaaccagctcctggtcatccaccttcccccagttattcaacc-aactctaatgtaggtgctgctgtgaagggatttagcagatataattaagggcctcaattagttgactttag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30283884 306 + 173848474 cTAAATtaactataagatattaaacat-gtaacttagttttaaaaggaaaggagaagttccacggct----gaagaggatgtattttattactattcacaatgatcactttacttgaacttcaatttccaactgtgtccaaattaaacacaaaaggaagaTCCAGCCCTTCCTGGGCTGattctatcatggctcccaacaaccagctcctggtcatccaccttcccccagttattcaacc-aactctaatgtaggtgctgctgtgaagggatttagcagatataattaagggcctcaattagttgactttag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6092301 306 +   6154872 cTAAATtaactataagatattaaacat-gtaacttagttttaaaaggaaaggagaagttccacggct----gaagaggatgtattttattactattcacaatgatcactttacttgaacttcaatttccaactgtgtccaaattaaacacaaaaggaagaTCCAGCCCTTCCTGGGCTGattctatcatggctcccaacaaccagctcctggtcattcaccttcccccagttattcaacc-aactctaatgtaggtgctgctgtgaagggatttagcagatataattaagggcctcaattagttgactttag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74720142 305 + 122973662 cTAAATtaattataagatattaaactt-gtaacttagttttaaaaggtaaggagaatttccatggct----gaaaaggatgtatttgatgaccattcacaatgatcactttacttgaacttcaatttccaactgtgtcctaattaaacacaaaTTGAAGATTCTACCCTtgctaggctgattctatgatggc-ctcaacaaccagctcctggtcattcaccttcctccagttactcaatc-aactctaatataggtgctgttgtgaaaggatttagcagatataattaagggcctcaattagttgactttag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30387636 303 + 172585720 CTAAATTAACTATAAGATAACAAACAT-GTAACTTAGTTTTAAAAGGTaaggagaattttcatggct----gaagaggacg--ttttattaccattcacaatgatcactttactacaactccaatttccaactgtgtcccaataaaacacaaaaggaagGTCCAATCTTtgctaggctgattctatgatgg-ccccaacaaccagctcctggtcattcaccttcctccagttattcaacc-aactctaatgtaggtgctgctgtgaagggatttagcagatataattaagcgcttcaattagttgactttgg
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29222655 304 -  71996105 cTAAATTAACTATAAGATAATAAACAT-GTAACTTAGTTTTAAaaggtaaggagaattttcatggct----gaagaggacg--ttttattaccattcacaatgatcactttactacaactccaatttccaactgtgtcccaataaaacacaaaaggaaaaTCCAATCTTtgctaggctgattctatgatggcccccaacaaccagctcctggtcattcaccttcctccagttattcaact-aactctaatgtaggtgctgctgtgaagggatttagcagatataattaagtgcttcaattagttgactttag
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2947474 303 -   3067355 cTaaagtaactataagataataaacat-gtaacttagttttaaaaggtaaggagaattttcatggct----gaagaggacg--ttttattaccattcacaatgatcactttactacaactccaatttccaactgtgtcccaataaaatacaaaaagaagaTCCAATCCTtgctaggctgattctatgatgg-ccccaacaaccagctcctggtcattcacctttccccagttattcaacc-aactctaatgtaggtgctgctgtgaagggatttagcagatataattaagcgcctcaattagttgactttag
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            11387 305 +    515838 cCAAATTAATTGTAAAATACTAAATAT-ATAACTTGGTTGTAAAAGGTAAGGAGAATTTCCATGGCT----GAAGAGAATGTATTTTATTACCGTTCACGATGATCACTTTACTTGAAATTCAATTTCCAGCTGTGTCCCAATTAAATACAAAAGGAAGATCCAACCCTtgctaggctgattctatgatac-cctcaacaatcacctcctggtcattcacctccccccagttattcaacc-aactctaatgtaggtgctgctgtgaagggattcagtagatagaattaagggactcaattagttgacttcag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     391445 305 -   1771730 cTAACTtaactataagatattaaacat-gtaacttagttgtaaaaggtaaggagaatttccatggct----gaagaggatgtattttattaccgttcacaattttcactttacttgaacttcaatttcctactgtgtctcaattaaacacaaaaggaagaTCCAACCCTtgctaggctgattctatgatgg-ccccaacaaccatctcctggtcattcaccttcccccagttattccccc-aactctaatgtaggtgctgctgtgaagggattccgcagatatagttaagggcgtcaattagtccactgtac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     146066 304 -    383796 cTAAATTAATTGTAAGATACTAAATAT-ATAACTTGGTTGTAAAAGGTAAGGAGAATTTTCATGGCT----GAAGAGGATGTATTttgttactgttcacaatgatcactttacttgaacttcaatttccaaccgt-ttccaattaaacacaaaaggaagaTCCTATCCTtgctaggctgattctatgatat-ccccaacaaccaactcctggtcattcaccttcccccagatattctccc-aaattgaatgtaggtgctgctgtgaagggattcagcagatataattaagggcatcaattagttgactttag
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16983885 293 -  18854210 ctacattaattgcaagatattaaacat-gtcattttgttttaggatgtaagaagaatttccacggct----aaaaaggatgcattttaataccgctcccaaccacctattcatttgaacttctatttccaactgtgactc-attaaacacaaagggaaga---------tactaggctgattctatgatgtcccgcaataactacaccttggttattcaccttccctcag--gtttagtc-aacactaatgtagatgctgcaatgaagagactt-gcagatataattcgagtcccaaatcaattgacttaag
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              979957 307 +  72498081 ctaaattaactat--gatattaaacatcatctattggttttaagatttaagaagaatatctatgtctaagggaacagaatgcatattattaccattcacaacaatctatttatttggagtttgatttctgacggtaaaccaattaa--acaaaaggaagaagcaggctGTCCtaggcagatgctaagatggcctgccataactaacctctggttattcatattcttccagttgttggatcaaacactaatccaggtgctagcgtgaaaggactttgcatatgcagtgaag-gttcagatcagctgcatttaa
i canFam3.chr12            C 0 I 448
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399   0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I

a score=682233.000000
s hg38.chr6_GL000254v2_alt  1087902 145 +   4827813 gctgagtttatcctgc-ttggactgtcctaataaggagagtccttgaaaggactgggttcttcctgagcatagagattcacagtgtgagagggattcagcataa-ggggtttcctccactgtgggctttgaaaatgaaggggctgtg
s panTro5.chr6             30053546 145 + 175400573 gctgagtttaccctgc-ttggactgtcctaataaggagagtccttgaaaggactgggttcttcctgagcatagagattcacagtgtgagagggattcagcatga-ggggtttcctccactgtgggctttcaaaatgaaggggctgtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30284190 145 + 173848474 gctgagtttaccctgc-ttggactgtcctaataaggagagtccttgaaaggactgggttcttcctgagcatagagattcacagtgtgagagggattcagcatga-ggggtttcctccactgtgggctttcaaaatgaaggggctgtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6092607 144 +   6154872 gctgagtttatcctgc-ttggactgtcctaataaggagagtccttgaaaggactgggttcttcctgagcatagagattcacagtgtgaga-ggattcagcatga-ggggtttcctccactgtgggctttgaaaatgaaggggctgtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74720447 145 + 122973662 gctaggtttatcctgc-ttggactgtcctaatcaggtgagcccttgaaaggacagggttcttcctgaacatagagattcacagtgtgagagggactcagtatga-ggggtttcctccaccatggggtttgaaaatgaaggggctgtg
i nomLeu3.chr1a            C 0 T 34714
s rheMac8.chr4             30387939 146 + 172585720 gctgggtttctcctgc-ttggactgtcctaatcagatgagccctttaaaggactgggttcttcctgagcatagatattcacagtgtgagagggattcaacatgagggggtttcctccaccgtgggctttgaaaatgaagaggctggg
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29222959 145 -  71996105 gctgggtttatcctgc-ttggactgtcctaatcagatgagccctttaaaggactgggttcttcctgagcatagagattcacaatgtgagagggattcaacatga-ggggtttcctccaccatgggctttgaaaatgaagaggctgtg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2947777 145 -   3067355 gctgggtttatcctgc-ttggactgttctaatcagatgagccctttaaaggactgggttcttcctgagcatagagattcacaatgtgagagggattcagcgtga-ggggtttcctccaccgtgggctttgaaaatgaagaggctgtg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            11692 144 +    515838 gctgggtttatcctgc-ttggactgtcctaatcagctgagcccttgaac-aactggtttcttcatgagcatagagattcatggtgtgagaatgactcagcatga-ggggtttcctccactgtgggccttgaaaatgaaggggctgtg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     391750 145 -   1771730 gccgggtttattctga-gtggactgtcctaatcaggtgaacctgggaaaggactaggtccttcctgagcatagagattcacagtgtgagtgggattcagcatga-ggggtttcctccactgtgggctttgaaaatgaaggagctgtg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     146370 145 -    383796 gctgggtttattctgc-gtggactgtcctaatcaggtgagcccttgaaaggactgggttcttcctgagcgtagagattcacagtgtgagagggattcagcatga-ggggtttcctccactgtgggctttgaaaatgaaggggctgtg
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16984178 133 -  18854210 atagtgattatcctgtaccaaaatgccctagtcaggtgagttcttaaaa-aactgagtttttcctgagcacc-agattcacagggagaaagggactcagtgtga-gt-----------ctttggtctttgaaagtggagagttccag
i otoGar3.GL873550         C 0 C 0
e canFam3.chr12              980264 448 +  72498081 I
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399   0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I

a score=407111.000000
s hg38.chr6_GL000254v2_alt  1088047 110 +   4827813 taggaaaggacgctggtgggcaccatgcattgagtgcagccctccctgttctctacagtgacagccagtga-ggaacag----ggacctcagtcttacaactgccagaaactgca
s panTro5.chr6             30053691 110 + 175400573 taggaaagaacgctggtgggcaccgtgcattgagtgcagccctccctgttctctacagtgacagccagtga-ggaacag----ggacctcagtcttacaactgccagaaactgca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30284335 110 + 173848474 taggaaagaacgctggtgggcaccgtgcattgagtgcagccctccctgttctctacagtgacagccagtga-ggaacag----ggacctcagtcttacaactgccagaaactgca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6092751 109 +   6154872 taggaaagaa-gctggtgggcaccatgcattgagtgcagccctccctgttctctacagtgacagccagtga-ggaacag----ggacctcagtcttacaactgccagaaactgca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30388085 110 + 172585720 taggaaagaacgctggtgggcaccaggaattgagcacagccctccctgttctctacagtgacagccatcga-agaacag----caacctcagtcttacaactgccagaaactgca
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29223104 110 -  71996105 taggaaagaacgctggtgggcaccaggaattgagcgcagccctccctgttctctacagtgacagccagtga-agaacag----caacctcagtcttacaactgccagaaactgca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2947922 110 -   3067355 taggaaaaaacgctggtgggcaccaggaactgagcacagccctctctgttctctacagtgacagccagcga-agaacag----ggacctcagtcttacaactgctagaaactgca
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            11836 110 +    515838 taggcaagaatgctggtgggcaccaggaattgagcacatccctccctgttctctaagttgacagccagcaa-ggaacag----gaacctcagtcttacaactgccaaaaactgca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     391895 110 -   1771730 taggcaagaatgctggtggacaccaggaattgaacacttcccttcatgttctctaccttgacagccagcaa-cgaacag----ggacctcagtcttacaactgccagaaactgca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     146515 108 -    383796 tgggaaagaatgctggtgggcaccaggaattgaccacatccctccctgttctccaccttggcagcaagcaa-ggagcag----gaacct--gtcttacaactgccaaaaactgca
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16984311 103 -  18854210 tggcaaagaatgttggtggc------------agtgcccccccgcccccggtctaccctgacagctggttatcaaacagagatggacaacagtcctacaacttccagaaacagca
i otoGar3.GL873550         C 0 I 162
e canFam3.chr12              980264 448 +  72498081 I
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399   0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74720592 34714 + 122973662 T

a score=867532.000000
s hg38.chr6_GL000254v2_alt  1088157 255 +   4827813 ttctgccacctctgtataagcctgaaggaggattcaaaatgaaaacacaggtttaggaagaccggaacagagattccatccacatcatgcccagatttctgattaagaaactataaaca-acaaatgagtgttatttggccaggcgtggtagtgcacacctgt-atcctaacatttgaggagctgacacaggaggaacacttgcagccaggactttgagaccagctaggataatatagtgagacactcgtctctaca
s panTro5.chr6             30053801 252 + 175400573 ttctgccacctctgtataagcctgaaggaggattcaaaatgaaaacacaggtttaggaagaccggaacagagattccatctacatcatgcccagatttctgattaagaaactataaaca-a---atgggtgttatttggccaggcgtggtagtgcacacctgt-atcctaacatttgaggagctgacacaggaggaacacttgcagccaggactttgagaccagctaggataatatagtgagacactcgtctctaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30284445 255 + 173848474 ttctgccacctctgtataagcctgaaggaggattcaaaatgaaaacacaggtttaggaagaccggaacagagattccatccacatcatgcccagatttctgattaagaaactataaaca-acaaatgggtgttatttggccaggcgtggtagtgcacacctgt-atcctaacatttgaggagctgacacaggaggaacacttgcagccaggactttgagaccagctaggataatatagtgagacactcgtctctaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6092860 255 +   6154872 ttctgccacctctgtataagcctgaaggaggattcaaaatgaaaacacaggtttaggaagaccggaacagagattccatccacatcatgcccagatttctgattaagaaactataaaca-acaaatgggtgttatttggccaggcgtggtagtgcacacctgt-atcctaacatttgaggagctgacacaggaggaacacttgcagccaggactttgagaccagctaggataatatagtgagacactcgtctctaca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30388195 256 + 172585720 ttctgccacctctgtataagcctgaagg-ggattcaaaatgaaaacacagctttgggaagcccagaatagacattctgtccacatcatgcccagatttctgactaaggaactataaacagataaacgggtgttgtttggccaggcgtggtagtgcacgcctgtaatcctaacatttgaggagctgacacagaaggatcacttgcaaccaggagtttgagactagtcaggataatacagtgagacattcgtctctaca
i rheMac8.chr4             C 0 I 2
s chlSab2.chr17            29223214 257 -  71996105 ttctaccacctctgtataaacctgaaggaggattcaaaatgaaaacacagctttgggaagcccagaatagacattctgtccacatcatgcccagatttctgactaaggaactataaacagataaacgggtgttgtttggccaggtgtggtagtgcacgcctgtaatcccaacatttgaagagctgacacagaaggatcacttgcagccaggagtttgagactagtcaggataatacagtgagacactcgtctctaca
i chlSab2.chr17            C 0 I 2
s colAng1.NW_012115566v1    2948032 255 -   3067355 ttctgccacctctgtacaagcctgaagg-ggactgaaaatgaaaacacagctttgggaagcccagaacagagattctatccacatcatgcccagatttctgactgaggaactataaacagataaacgggtgttgtttggccaggcgtggtagcgcacgcctgt-atcctaacatttgaggagctgacacaggaggatcacttgcagccaggactttgagagtagccaggataatacagtgagacacttgtctctaca
i colAng1.NW_012115566v1   C 0 I 2
s saiBol1.JH378341            11946 255 +    515838 ttctaccacctctgtgtaagcctgaaggagaattcaaaatgaaaacacagctttgggaaacccagaacagagattctatccacatcatgccgggatttctgactaaggaactataaacagataaatgggtgttgttAggccaggtgtgatagcacacacctgtaatcgtaaca-ttgaggagctgacacaggaggatcacttgtagccaggagtttgagaccagc-aggataatatagtgagaccgttatcactaca
i saiBol1.JH378341         C 0 I 7
s cebCap1.NW_016107755v1     392005 255 -   1771730 ttctgccacctctgtatcagcctgaagaaggattcaaaatgaaaacacagctttgggaagtccagaac--agattccatccatatcttgcccagacttctgactaaggaactataaactgttcaatggatgttgtttggcctggaatggtagtgcacacctgtaatcctaacatttgaggagctgacacagggggatcacttggagccaggagtttgagaccagctaggataatgtagtgagacacttgtctctaca
i cebCap1.NW_016107755v1   C 0 I 5
s aotNan1.NW_018496904v1     146623 252 -    383796 ttctgactcctctgtataagcctgaaggagaattcaaaatgaaaacactgctttgggaagcacagaacagagattccatccacatcatgctgggattgctgactaaggaactataaacagataaatgggtgttgttAggccaggcttggtagcacacacctgtaatcgtaacatttgaggagctgacacaggaagatcacttgtagccaggagtttgagaccaac-aggataatat----agaccgtcatctctaca
i aotNan1.NW_018496904v1   C 0 I 7
e canFam3.chr12              980264 448 +  72498081 I
e otoGar3.GL873550         16984414 162 -  18854210 I
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399   0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74720592 34714 + 122973662 T

a score=310679.000000
s hg38.chr6_GL000254v2_alt  1088412 83 +   4827813 tttctttttaa--ttagctgggcatggtggcacttgcctgcagtcctagctactctgaagactgaggtaggagggtcccttgagc
s panTro5.chr6             30054053 83 + 175400573 tttctttttaa--ttagctgggcatggtggcacttgcctgcagtcctagctactctgaagactgaggtaggagggtcccttgagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30284700 83 + 173848474 tttctttttaa--ttagctgggcatggtggcacttgcctgcagtcctagctactctgaagactgaggtaggagggtcccttgagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6093115 83 +   6154872 tttctttttaa--ttagctgggcatggtggcacttgcctgcagtcctagctactctgaagactgaggtaggagggtcccttgagc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74685878 85 + 122973662 tttttttttaaatttacctgagcatggtggtacttgcctgtagtcctagctactccagacactgaggcagggggacctctagagg
i nomLeu3.chr1a            T 34714 C 0
s rheMac8.chr4             30388453 83 + 172585720 ttttttttaaa--ttaccttggcatggtggcacttgcctacagtcctagctactctgaagactgaggcaggagggtcccttgagc
i rheMac8.chr4             I 2 C 0
s chlSab2.chr17            29223473 83 -  71996105 ttttttaaaaa--ttaccttggcatggtggcacttgcctgcagtcctagctactctgaagactgaggcaggagggtcccttgagt
i chlSab2.chr17            I 2 C 0
s colAng1.NW_012115566v1    2948289 81 -   3067355 tttttt--aaa--ttaccttggcatcgtggcactcacctgcagtcctagttactctgaagactgatgcaggagggtcccttgagc
i colAng1.NW_012115566v1   I 2 C 0
s saiBol1.JH378341            12208 76 +    515838 tttttctttaa--ttag-taagcatggtggtact----tgcagtcctagctactctgaagactgaggcaggagggtcccttga--
i saiBol1.JH378341         I 7 C 0
s cebCap1.NW_016107755v1     392265 83 -   1771730 tttttttttaa--ttagctggatgtggcggcactcgcctgctctcctagctgctctgaagactgaggcagtagggtcccttgagc
i cebCap1.NW_016107755v1   I 5 C 0
s aotNan1.NW_018496904v1     146882 77 -    383796 tttttctttaa--ttagttgagcatgatggtact----tgcagtcctagctactctgaagactgaggcaggaggatcccttga--
i aotNan1.NW_018496904v1   I 7 C 0
e canFam3.chr12              980264 448 +  72498081 I
e otoGar3.GL873550         16984414 162 -  18854210 I
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399  0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I

a score=330927.000000
s hg38.chr6_GL000254v2_alt  1088495  79 +   4827813 ccaggaatttgaggctgcagtgagccatgatcatgtg-actgcacttcatc--------ctggatga-----cagaggga------------------gactctgtctcta
s panTro5.chr6             30054136  79 + 175400573 ccaggaatttgaggctgcagtgagccatgatcatgtg-actgcacttcatc--------ctggatga-----cagaggga------------------gactctgtctcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30284783  79 + 173848474 ccaggaatttgaggctgcagtgagccatgatcatgtg-actgcacttcatc--------ctggatga-----cagaggga------------------gactctgtctcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6093198  79 +   6154872 ccaggaatttgaggctgcagtgagccatgatcatgtg-actgcacttcatc--------ctggatga-----cagagcga------------------gactctgtctcta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74685963  79 + 122973662 ccaagagtttgaggttgcagggaaccatgatcatgca-actgcacttcacc--------ctggataa-----gagaggga------------------gaccatgtctcta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30388536  79 + 172585720 ccagaagcttgaggctgccctgagccataatcatgtg-actgcacttcacc--------ctggatga-----cagaggga------------------gactctgtctcta
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29223556  79 -  71996105 ccagaagcttgaggctgcagtgagccatgatcatgtg-actgcacttcacc--------ctggatga-----ccgaggga------------------gactctgtctcta
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2948370  79 -   3067355 ccagaagtttgaggctgcagtgagccatgatcatgtg-actgcacttcacc--------ctggatga-----cagaggga------------------gactctgtctcta
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            12284  73 +    515838 ------gtttgaggctgcagtgagccatgaccatgtg-actgcatttcacc--------ctggatga-----cagaggga------------------gactttgtctcta
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     392348  80 -   1771730 ccaggtgtttgggactgcagtgaccgatgatcatgtg-tctgcgcttcacc--------ctggatga-----cagaggtat-----------------aactctgtctcta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     146959  73 -    383796 ------gtttgaggctgcagtgagccatgatcatgtg-actgaacttcatc--------ctggatga-----cagagaga------------------gactttgtctcta
i aotNan1.NW_018496904v1   C 0 C 0
s canFam3.chr12              980712 109 +  72498081 ccaggaagtggagactgc--cgacctccaactacaagaactggaattctgctaacagatctgtacaagcttgtagggggacctcaagctctagttgcaaacactgtctgtg
i canFam3.chr12            I 448 C 0
e otoGar3.GL873550         16984414 162 -  18854210 I
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399   0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I

a score=462489.000000
s hg38.chr6_GL000254v2_alt  1088574 119 +   4827813 -----------aaaa--------------------------------taaatcaatgaataca-ataaatgggtgctgtttaaagcca--at--gtttgtga-caatttgtta-cccagtcttataaaattcatacaCAGACTCAAAAGA----CTC------------ct----ggaatgaactgatg----
s panTro5.chr6             30054215 119 + 175400573 -----------aaaa--------------------------------taaatcaatgaataca-ataaatgggtgctgtttaaagcca--at--gtttgtga-caatttgtta-cccagtcttataaaattcatacaCAGACTCAAAAGA----CTC------------ct----gaaatgaactgatg----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30284862 119 + 173848474 -----------aaaa--------------------------------taaatcaatgaataca-ataaatgggtgctgtttaaagcca--at--gtttgtga-caatttgtta-cccagtcttataaaattcatacaCAGACTCAAAAGA----CTC------------ct----gaaatgaactgatg----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6093277 120 +   6154872 -----------aaaa--------------------------------taaatcaatgaataca-ataaatgggtgctgtttaaagcca--at--gtttgtga-caatttgttaccccagtcttataaaattcatacaCAGACTCAAAAGA----CTC------------ct----ggaatgaactgatg----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74686042 119 + 122973662 -----------caaa--------------------------------taaataaataaatata-ataaatgggtgttgtttaaagccc--at--gtttgtgg-taatttgtta-tgcagtcatataaaagtcatacaCAGACTCAACAGA----CAC------------AT----GGAATGAATTTATA----
i nomLeu3.chr1a            C 0 N 0
s rheMac8.chr4             30388615 118 + 172585720 -----------aaaa--------------------------------caaaTCAATGAATACa-ataaatgggtg-tgtttaaagcca--ac--atttgtga-caatttgcta-cacaatcttgtaaaattcatacaGAGACTCAAAAGA----CTC------------GT----GGAATGAATTGATG----
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29223635 118 -  71996105 -----------aaaa--------------------------------caaaTCAATGAATACA-ATAAATGGGTG-TGTTTAAAGCCA--AT--GTTTGTGA-CAATTTGCTA-CACAGTCTTGTAAAATTCATACAGAGACTCAAAAGA----CTT------------GT----GGAATGAATTGATG----
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2948449 116 -   3067355 -----------acaa--------------------------------caaatcaatgaataca-ataaatgggtg-tgtttaaagcca--at--gtttgtga-caatttgtta-cacagtcttataaaattcatac--aGACTCAAAAGA----CTC------------AT----GGAATGAATTGATG----
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            12357 113 +    515838 -----------aaaa--------------------------------taaaTGAATGAATACA-ATAAATGGATGTTATTTAAAGCTG--AT--ATTTTTGA-TAA----TTA-CACCATCTTATAAAATTCATACACAGGCTCAACAGA----CTT------------AT----GGAATGAATTGA------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     392428 117 -   1771730 -----------aaaa--------------------------------taaataaatca--aca-ataaatgggcattgtttaaggcaa--at--atttgcga-aaatttgtta-cccagtcttataaaattcatTAACAGGCTCAACAGA----CTC------------AT----GGAATAAATTGATG----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     147032 115 -    383796 -----------aaaa--------------------------------taaaTGTATGAATACa-ataaacgggtgttgtttaaagcca--at--atttgcga-taa----tta-cacagtcttataaaattcatacaCAGGCTCAACAAA----CTT------------AT----GGAATGAATTGATT----
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16984576 116 -  18854210 -----------aaaa--------------------------------ca-------------a-ataaacagcccttatttaaagaca--ataaatttgtgg-taatctggta-tgcagaaatagaaaattaataAACCAGCTCAATAGATAGGCAC------------ATAACGGGAATGAATTTATG----
i otoGar3.GL873550         I 162 C 0
s canFam3.chr12              980821 182 +  72498081 acatgctgaggagaagacccctcagcatcactcctggactgctgacctacagaactgtgcacatacacatgggtgtggttgtaagtcactat--gtttgtggttaatttgtta-tgcagcaatagaaaaccaccacaTAGCCTCAATGCA----CATCACATTTTCCCAGT----GGAATGAATGAATGTATG
i canFam3.chr12            C 0 C 0
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399   0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I

a score=1065947.000000
s hg38.chr6_GL000254v2_alt  1088693 223 +   4827813 aattgatacgcacactagttacataaaataaaatcttttttaacttttttagtgttttacattttataattttc-tgtgatgcaatttaa----TACACTCATAATTCATTCATTCAGCCAAGAAAAAATAATTTAGTCCCTACAATGAACCAGGTATGCC------------------------------------------CTCATATGCTCAAGTGCCTGACATTCTAGAAGCTTCACAAgaatgaggtggagccactggagtgttt
s panTro5.chr6             30054334 223 + 175400573 aattgatacgcacactagttacataaaataaaatcttttttaactttttcagtgttttacattttataattttc-tgtgatgcaatttaa----tacactcataattcatTCATTCAGCCAAGAAAAAATAATTTAGTCCCTACAATGAACCAGGTATGCC------------------------------------------CTCATATGTTCAAGTGCCTGACATTCTAGAAGCTTCACAAgaatgaggtggagccactggagtgttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30284981 223 + 173848474 aattgatacgcacactagttacataaaataaaatcttttttaactttttcagtgttttacattttataattttc-tgtgatgcaatttaa----tacactcataattcatTCATTCAGCCAAGAAAAAATAATTTAGTCCCTACAATGAACCAGGTATGCC------------------------------------------CTCATATGCTCAAGTGCCTGACATTCTAGAAGCTTCACAAgaatgaggtggagccactggagtgttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6093397 223 +   6154872 aattgatacgcacactagttacataaaataaaatcttttttaactttttcagtgttttgcattttataattttc-tgtgatgcaatttaa----tacactcataattcatTCATTCAGCCAAGAAAAAATAATTTAGTCCCTGCAATGAACCAGGTATGCC------------------------------------------CTCATATGCTCAAGTGCCTGACATTCTAGAAGCTTCACAAgaatgaggtggagccactggagtgttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74829072 218 + 122973662 AATTTATATACACACTAGTTACATAA---AAAAACTTTCTTAAC-TTTTCAGTGTTTTACATTTTATAATTTTC-TGTGATACAATTTAA----TACACTCATATTTCattcattcagtcaacaaaaattaatttagtccctacaatgaaccaggtATGCC------------------------------------------CTTATATGCTCACGTG-CTGACATTCTAGAAGCTTCACAAGACCGAGGTGGAGCCACTGGAGTGTTT
i nomLeu3.chr1a            N 0 I 8500
s rheMac8.chr4             30388733 223 + 172585720 AATTGATATGCACATTAGTTACATAAAATAAAATATATTTTAACTTTTTCAGTACTTCACATTTTATAATTTTC-TGTGATGCAATTTAA----TACACTCATATTTCattcagtcagtcaagaaaaattcatttagtccctacgatgaaccaggtATGCC------------------------------------------CTCATATGCTCAAGTGCCTGACATTCTAGAAGCTTCACAAgaacaaggtggagccactggagtgttt
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29223753 223 -  71996105 AATTGATACGCACACTAGTTACATAAAATAAAAtatattttgactttttcagtattttacattttataatttTC-TGTGATGCAATTTAA----TACACTCATATTTCattcagtcagtcaagaaaaattcatttagtccctacgatgaaccaggtATGCC------------------------------------------CTCATATGCTCAAGTGCCTGACATTCTAGAAGCTTCACAAgaacaaggtggagccactggagtgttt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2948565 219 -   3067355 AATTGATACGCACACTAGTTACATAAAATAAAATGTATTTTAACTTTTTCAGTGTTTTACATTTTATAATTTTC-TGGGATGCAATTTAA----TACACTCATAT----ttcagtcagtcaagaaaaattaatttagtccctatgatgaaccaggtATGCC------------------------------------------CTCATATGCTCAAATGCCTGACATTCTAGAAGCTTCACAAgaacaaggtggagccactggagtgttt
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            12470 220 +    515838 ---TGATATGCATGCTAGTTACATAAAATAAAATCTTTCTTAACTTTTTCAGTGTTTTACATTTTATAATTTTC-TGTGATACAACTTAA----TACACTCATATTTCattcattcagtcaataaaaattaatttagtgcccatgatgaaccaggtctgcc------------------------------------------ctCACATGCTTACATGCCTGACATTCTGGAAGCTTCACAAGACCAagatggagccactggagtgttt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     392545 206 -   1771730 AATTGATATGCACACTAGTTACATAAAATAAAA--TGTCTTAACTTTGTCAGTGTTTTACATTTTGTAATTTTC-TGTGGTCCATTTTAA----TACACTCATGTTTCAAtcactcagtcaacaaaaattaatttagtgcctacgctgaaccaggtATGCC------------------------------------------CTCATATATTCATGTGCCTGACATTCTAGAAGCTTCACAAAATTGAGGTG---------------TT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     147147 219 -    383796 AATTGATATGCACACTAGTTACATTAAATAAAA----TCTTAATTTTTTCAGTGTTTCACATTTTATAATTTTC-TGTGATGCAACTTAA----TGCACTCATATTTCattcattcagtcaacaaaaattaatttagtgcctacgatggcgcaggtatgcc------------------------------------------ctaATATGCTCATATGCCTAACATTCTGGAAGCTTCACAAGACCAaggtggagccactggagtgttt
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16984692 255 -  18854210 AACTGATATGCA-ATTATTCACATGAAAGAAACTATTTCCTA-----TTTAGTATGTTTAAGTTTATGATTTTCAGGTGATTCAGTTT--------TACTGCAATCCTattccttcattcaacaataattaatttaat-cctactgtataccaggtatgcctgttcatgctggggataccattctgacccagccaacccaaagcccctgtgcacctgtgccttaccttccatgggCTTTACAAGAGTGAGATCAACCCATTGGAGCATTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              981003 264 +  72498081 AATCGTCGTGCACACTAGTTGCATGAAATAAAATCTC-----ATTTTTCATGTATTTTCCATTTTGTGATTTTTAAGTGATGGGATTAAAATCTAATAGTCATATTTCattcattcattcaacaacaattaatttagtgcctactctgcaccaagaatggctttctacactaggggtacagctttcctcaaagtagcccaaagcacctgtgctt-catgctttacattctagaggCTTCCTAAAagtgagatggagcccctggagcattt
i canFam3.chr12            C 0 C 0
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399   0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I

a score=769740.000000
s hg38.chr6_GL000254v2_alt  1088916 179 +   4827813 taggtggagaaatgacacactctgactcatagtagcag-------gaccact-------at-agAGAGAACACTC----AT--GTAGCAGGTCATGGAACAGTGCTAGAGCCACAGTTCAGGAGTGAGAGGGTGGTGGGGATTAAGGGGAGAAGAGGGCCTGAGGGATGAGAGGGACGGAGGGAAGGGCTGGAGGAGCAG
s panTro5.chr6             30054557 179 + 175400573 taggtggagaaatgacacactctgactcatagtagcag-------gaccact-------at-agAGAGAACACTC----AT--GTAGCAGGTCATGGAACAGTGCTAGAGCCACAATTCAGGAGTGAGAGGGTGGTGGGGATTAAGGGGAGAAGAGGGCCTGAGGGATGAGAGGGATGGAGGGAAGGGCTGGAGGAGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30285204 179 + 173848474 taggtggagaaatgacacactctgactcatagtagcag-------gaccact-------at-agAGAGAACACTC----AT--GTAGCAGGTCATGGAACAGTGCTAGAGCCACAATTCAGGAGTGAGAGGGTGGTGGGGATTAAGGGGAGAAGAGGGCCTGAGGGATGAGAGGGATGGAGGGAAGGGCTGGAGGAGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6093620 177 +   6154872 taggtggagaaatgacgcactctgactcatagtagcag-------gaccact-------at-agagagaacactc----at--gtagcaggtcatggaacagtgctagagccacaattcaggagtgagagggtggtggggattaa-ggGAGAAGAGGGCCTGAGGGATGAGAGGGACGGA-GGAAGGGCTGGAGGAGCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30388956 183 + 172585720 taggtggagaaatgacacactgtgactcacagcagcag-------gaccact-------gt-ggAGAGAACAGTCACGTAC--GTAGCAGGTCATGGAACAGTGCTAAATCCACAATTCAGGAGTGACAGGTTGATGGGGATTAAGGGGAGAAGAGGGCCTGAGGGATGAGAGTGAAAGGGGGAAGGGCTGGAGAAGCAG
i rheMac8.chr4             C 0 N 0
s chlSab2.chr17            29223976 182 -  71996105 taggtggagaaatgacacactgtgactCGCAGCAGCAG-------GACCACT-------GT-GGAGAGAACAGTCACGTAC--GTAGCA-GTCATGGAACAGTGCTACATCCACAATTCAGGAGTGACAGGGTGGTGGGGATTAAGGGGAGAAGAGGGCCTGAGGAATGAGAGGGACGGAGGGAAGGGCTGGAAAAGCAG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2948784 179 -   3067355 taggtggagaaatgacacactctgactcatagcagcag-------gaccact-------gt-ggAGAGAACAGTC----AC--GTAGCAGGTCATGGAACAGTGCTAAATCCACAATTCAGGAGTGACAGGGTGGTGGGGATTAAGGGGAGAAGAGGGCCTGAGGGATGAGAGGGACGGAGGGAAGGGCTGGAGAAGCAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            12690 177 +    515838 taggtggagaaatgacacactctgattcaCAATAGCAG-------AACCATT-------GT-GGAGAGAACAGTC----AT--GTAGCAGATAATGAGACAGTGCTAGAGCCACAATTCAGGAGTGACAGGGTGGTGGGGACT--AGGGAGAGGAAGGCCTGAGGGATGAGAGGGACGGAGGGAAGGGCTGGAGAAGCAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     392751 178 -   1771730 TATGTGGAGAAATGACAAACTCTGATTCACAGTAGCAG-------GATCACT-------AT-GGAGAGA--AGTC----AT-CATAGTAGGTAATGGGACAGTGCTAGAGCCACTATTCGGGAGTGACAGGGTGGTGTGGAATAAAGggagaggaaggcctgagggacgagagggatggagggaagggctggagaagcag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     147366 179 -    383796 taggtggagaaatgacacactctgactcaCAGTAGCAG-------GTTCATT-------GT-GGAGAGAATAGTC----AT--GTAGCAGATAACGAGACAATGCTAGAACCACAATTCAGGAGTGACAGGGTGGTGGGGTCTAAGGGGAGAGGAGGGCCTGAGGGATGAGAGGGATGGAGGGAAGGGCTGGAGAAGCAG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16984947 184 -  18854210 TAACGGAAGAAATGACAGAATCTGACTCTCAGCAGCAGGACTGGTGACCACT-------GTAGGGGAGAACAGCT----GTGGGCAGCAGGTGAGGGGACAA-GCTAGTGCCACAGTTCAggagtga-ggggtggtg-ggactaaggggggaag-ggacctgagg-atgggagggacagagggaaggtctggagaagcag
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              981267 181 +  72498081 tcagtgatgaaatgacacattctgactcacattagcag-------gatcactgaccccagt-ggagagagtggcc----ctgggtggcaggtgttggggtggcagcaggg-tgcaa-tcaggag-----AGCGGGTGGAGACTAAGGGGATGAGAAGGCATGAGGGCTGAGAGAGATGGAGAGAAGGGCTGCAGATGCAG
i canFam3.chr12            C 0 C 0
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399   0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=331253.000000
s hg38.chr6_GL000254v2_alt  1089095 79 +   4827813 GAGGTGAGGAAAAGGAGCAGA-GGAAAGAATTCCAAAGCAGCAGAACTCTTAGGT-TTAAACACATTGTTTTATAGA-TTTT--
s panTro5.chr6             30054736 79 + 175400573 GAGGTGAGGAAAAGGAGCAGA-GGAAAAAATTCCAAAACAGCGGAACTCTTAGGT-TTAAACACATTGTTTTATAGA-TTTT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30285383 79 + 173848474 GAGGTGAGGAAAAGGAGCAGA-GGAAAAAATTCCAAAACAGCGGAACTCTTAGGT-TTAAACACATTGTTTTATAGA-TTTT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6093797 78 +   6154872 GAGGTGAGGAAAAGGAGCAGA-GGAAAGAATTCCAAAGCAG-GGAACTCTTAGGT-TTAAACACATTGTTTTATAGA-TTTT--
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30542557 81 + 172585720 GAGGTTAGGAAAAGGAGCAGAGGGAAGGAATTGGAAAGCAGTAGGATTCTTACGT-TTAAATACACTGTTTTATAGATTTTT--
i rheMac8.chr4             N 0 C 0
s chlSab2.chr17            29224158 80 -  71996105 AAGGTGAGGAAAAGGAGCAGAGGGAAAGAATTCCAAAGCAGCAGAATTCTTAGGT-TTAAATACGTTGTTTTATAGA-TTTT--
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2948963 80 -   3067355 AAGTTGAGGAAAAGAAGCAGAGGGAAAGAATTCCAAAGCAGCAGGATTCTTAGGT-TTAAATATATTGTTTTATAGA-TTTT--
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            12867 81 +    515838 GAGGTGAGGAAAAGGAGCAGAGGGAAGGAAATCGAAAGTAACAGAATTCTTAGGT-TTAAACACATTGTTTTATAGATTTTT--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     392929 81 -   1771730 gaggtgaggagaaggagcagaggGAAAGAATTTGAAGGCAGCAGAATTCTCAGGT-TTAAACACATTTTTTTATAGATTTTT--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     147545 81 -    383796 GAGGTGAGGAAAAGGAGCAGAGGGAAGGAATTCAAAAGCAACAGAATTCTTACGT-TTAAACACATTGTTTTATAGATTTTT--
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16985131 78 -  18854210 gaggtgaggaacaggagcagagggaaagaATTGTAAAGCAGCTGAATTCTCAGAT-TTAAATAA--TGTTTTATAGA-tttt--
i otoGar3.GL873550         C 0 I 163
s canFam3.chr12              981448 81 +  72498081 --GTGGAGGGAGAGAAGCAGTGGTAAAGAATTCTAAAGTAGTGGAATTTGAATACATTGAATACATTGTTATATCAA-TTTTTT
i canFam3.chr12            C 0 C 0
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399  0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=48900.000000
s hg38.chr6_GL000254v2_alt  1089174 12 +   4827813 AATACATCCATC
s panTro5.chr6             30054815 12 + 175400573 AATACATCCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30285462 12 + 173848474 AATACATCCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6093875 12 +   6154872 AATACATCCATC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30542638 12 + 172585720 AATACATCCATC
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29224238 12 -  71996105 AATACATCCATC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2949043 12 -   3067355 AATACATCCATC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            12948 12 +    515838 AATACATCCATC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     393010 12 -   1771730 AACACATCCATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     147626 12 -    383796 AATACATCCATC
i aotNan1.NW_018496904v1   C 0 C 0
s canFam3.chr12              981529 12 +  72498081 ATTTAATCTCTA
i canFam3.chr12            C 0 C 0
e otoGar3.GL873550         16985209 163 -  18854210 I
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399  0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=809212.000000
s hg38.chr6_GL000254v2_alt  1089186 224 +   4827813 TACAGAGCCTCGCTGGGTGTTCTTTGCAGTTGGCCTTTAATATCT-------------------------------------------------------------------------------------------TATG-------TGGGTCTGCCTAGAAACTAA--TTG-TTTTTT-ATGTTAATCAGGTTTAAA-AAATA--CTAAGTATT-CCTAA----AAAATA--TACACTCCACTCACATGTGGATACTTCCTAAAAACAGGCAGTGCGTGAGCACTAGTGAGGGGCATTGTGACTGCACTGAACACTTACAACTGTGAGGTGAATA
s panTro5.chr6             30054827 222 + 175400573 TACAGAGCCTCGCTGGGTGTTCTTTGCAGTTGGCCTTTAATATCT-------------------------------------------------------------------------------------------TATG-------TGGGTCTGCCTAGAAACTAA--TT--TTTTTT-ATGTTAATCAGGTTTAAA-AAATA--CTAAGTATT-CCTAA----AAAA-A--TACACTCCACTCACATGTGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTAGTGAGGGGCATTGTGACTGCACTGAACACTTACAACTGTGAGGTGAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30285474 221 + 173848474 TACAGAGCCTCGCTGGGTGTTCTTTGCAGTTGGCCTTTAATATCT-------------------------------------------------------------------------------------------TATG-------TGGGTCTGCCTAGAAACTAA--T---TTTTTT-ATGTTAATCAGGTTTAAA-AAATA--CTAAGTATT-CCTAA----AAAA-A--TACACTCCACTCACATGTGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTAGTGAGGGGCATTGTGACTGCACTGAACACTTACAACTGTGAGGTGAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6093887 224 +   6154872 TACAGAGCCTCGCTGGGTGTTCTTTGCAGTTGGCCTTTAATATCT-------------------------------------------------------------------------------------------TATG-------TGGGTCTGCCTAGAAACTAA--TTG-TTTTTT-ATGTTAATCAGGTTTAAA-AAATA--CTAAGTATT-CCTAA----AAAATA--TACACTCCACTCACATGTGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTAGTGAGGGGCATTGTGACTGCACTGAACACTTACAACTGTGAGGTGAATA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30542650 316 + 172585720 AACAGAGACTTGCTGAGTGTTCTTTGCAGTTGGCCTTTAATACCTAATTTAGGACTGCCTAAAACTAATGTTTTTTATGTTAATAAAGTTTAAAAAATACTTAATGTTCCTTCTTTGCAGTTGGCCTTTAATACCGTATT-------TGGGACTGCCTAGAAATGAATTTTT-TTTTTT-TTATTAATCAGGTTTTAA-AAATA--CCAAGTGTT-CCTAT----AAGATA--TACACACCACTTAGACGTGAATACTTCCTAAAAACAGGCAGTGCATGAGCACTGGTGAGCGGGGCTGTGACTGCATTGAACACTTG-AACTGTGAGGTGAATA
i rheMac8.chr4             C 0 I 1223
s chlSab2.chr17            29224250 223 -  71996105 TACAGAGCCTAGCAGGGTGACCTTTGAGGTTGGCCTTTAATGTCT-------------------------------------------------------------------------------------------TATG-------TGGGTCTGCCTAGAAACTAA--TCA-TTTCTT-ATGTTAATCAGG-TTTAA-AAGTA--CTAAGTATT-CCTAA----AAAATA--TACACACCACTTACATGTGGATACTTCCTGAAAACAGGCAGTGCATGAGCACTAGTGAGGGGCATTGTGACTGCGTTGAACACTTGCAACTGTGAGGTGAATA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2949055 223 -   3067355 TACAGAGCCTCACAGGGTGACCTTTGAGGTTGGCCTTTAATGTCT-------------------------------------------------------------------------------------------TATG-------TGGGTCTGCCTAGAAACTAA--TCG-TTTTTT-ATGTTAATCAGG-TTTAA-AAGTA--CTAAGTATT-CCTAA----AAAATA--TACACACCACTTACATATGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTAGTGAGGGGCATTGTGACTGCGTTGAACACTTGCAACTGTGAGGTGAATA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            12960 227 +    515838 TACAGAGTCTGCAAGGGTGTTCTTTGCAGTTGGCCTTTAATATCT-------------------------------------------------------------------------------------------TATG-------TAGGTCTTTCCAAAAACTAA--TTG-TTTTTT-ATGTTAATCAGGTTTAAATAAATA--CTAAGTGTT-CCTCT----AAAATATGCACACACCAATTAGATGTGGCAACTTTCTAAAAACAGGCAGTGCATGAGCACTGGTGAGGGGCCTTGTGACCGCCTTGAACACTTGCAGCAGTGAGGTGAATG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     393022 224 -   1771730 TACAGAGCCTAGCAGGGTGTTCTTTGCAGTTGGGCTTTAATACCT-------------------------------------------------------------------------------------------TATG-------TAGGTCTGCCTAAAGACTAA--TTG-TTTCTT-ATGTTAATCAGGTTTAAA-AAATA--CTAAGTGTT-CCTAT----AAAATA--AATACACCACTCAGATGCGGACACTTCCTAAAAACAGGCAGTGCATGAGCACTGGTGGGGGGCATTGTCACTGCACTGAACACTTGCGACTGTGAGGTGAATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     147638 234 -    383796 TACAGAGCCTGCAAGGGTGTTCTTTGCAGTTGGCCTTTAATACGT-------------------------------------------------------------------------------------------TATGTGGTTTTTAGGTCTGCCTAAAAAGTAA--TTG-TTTTTT-ATGTTAATCAGGTCTAAATAAACA--CTAAGTGTT-CCTAT----AAAATATGCACACACCACTTAGATGTGGCAACTTCCTAAAAACAGGCAGTGCATGAGCACTGGTGAGGGACACTGTGACCGCCTTGAACACTTGCGACTGTGAGGTGAATG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16985372 222 -  18854210 TACAGAGCTTAGCAGGGTCCTCTTTGCAATTAGTAATTAATATAT-------------------------------------------------------------------------------------------T-TG-------GGGGGCTGCTTAAAAGCTAA--TTG-CCTCCTAATGTGAATCAGGTTTAAA-AAGTA--CCAAATGTTCCCTCC----AAAATA--TACACACAGATTAGATGTGAACAATTCATAAAA--AGTCAAGCCATGAACACTGGAGAAGGGCATTTTGACCGT-TGGAGGACGAACAGCTTTGAAGTGATTA
i otoGar3.GL873550         I 163 C 0
s canFam3.chr12              981541 219 +  72498081 -TTAGGTCTTAGCAAGATATTGTTTGCATCTAATATTTACTGCAC-------------------------------------------------------------------------------------------TCTG-------TGGA-----CTGAATACCTG--TGGCCTCCTT-ATGTT-ATCAGGGTTAAG-AAGTAACCTAGATGCC-ACTAATACCCAAATA--AAATCGTC-CTTAGGTGC---TCATTCATACACACAGGCAACAC-TGAATGCTGATGACGGGCATTTGGACTGCCCTGAATACTTGCAACTATGAGGTGATTA
i canFam3.chr12            C 0 C 0
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399   0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=4500.000000
s hg38.chr6_GL000254v2_alt  1089410 2 +   4827813 AA-
s panTro5.chr6             30055049 2 + 175400573 AA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30285695 2 + 173848474 AA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6094111 2 +   6154872 AA-
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            29224473 2 -  71996105 AA-
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2949278 2 -   3067355 AA-
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            13187 2 +    515838 AA-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     393246 2 -   1771730 AA-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     147872 2 -    383796 AA-
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16985594 2 -  18854210 AA-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              981760 2 +  72498081 -AT
i canFam3.chr12            C 0 C 0
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399 0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e rheMac8.chr4             30542966 1223 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=137861.000000
s hg38.chr6_GL000254v2_alt  1089412 54 +   4827813 GTT-TGTGCT--GGCTCCTGGTTGCAACATATAGTAACATAGTGTGGTACTTTGTCT
s panTro5.chr6             30055051 54 + 175400573 GTT-TGTGCT--GGCTCCTGGTTGCAACATATAGTAACATGGTGTGGTACTTTGCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30285697 54 + 173848474 GTT-TGTGCT--GGCTCCTGGTTGCAACATATAGTAACATAGTGTGGTACTTTGTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6094113 54 +   6154872 GTT-TGTGCT--GGCTCCTGGTTGCAACATATAGTAACATAGTGTGGTACTTTGTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30544189 54 + 172585720 GTC-TGTACC--GGCTCCTGGTTGTAACATACAGTAACACAGTGTGCTTCTTTGTAT
i rheMac8.chr4             I 1223 C 0
s chlSab2.chr17            29224475 54 -  71996105 GTC-TGTACT--GACTCCTGGTTGCAACACACAGTACCACAGTGTGCTGCCTTGTAT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2949280 55 -   3067355 GTCTTGTACT--GACTCCTGGTTGCAACATACAGTAACACAGTGTGCTGCTTTGTAT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            13189 52 +    515838 GTC-TGTACT--GGCTCCTGGTTGCAACATACA-TAACACAGTGTGTA-CTTTGAAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     393248 35 -   1771730 GTC-TGTACT--GGCTCCTGGTTGCAACA--------------GTGTG-CT----AC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     147874 54 -    383796 GTC-TGTACT--GGCTCCTGGTTGCAGCAAACAGTAACACAGTGTGCGACTTTGAAC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16985596 51 -  18854210 -----GTCCTACAACTCCTGTTTGAAATACACAGTAACAAATTCGGGATCTTTGTA-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              981762 47 +  72498081 GGT-TGGACA-----CTCTGATTGAAATGTACtatatta----atgatactttctct
i canFam3.chr12            C 0 I 545
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399  0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=218156.000000
s hg38.chr6_GL000254v2_alt  1089466 53 +   4827813 TGAGGAGATGTCCTGGACTCACA--CGGAAACTTAGGGCTACGGAATGAAGGTAA
s panTro5.chr6             30055105 53 + 175400573 TGAGGAGATGTCCTGGACTCACA--CGGAAACTTAGGGCTACGGAATGAAGGTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30285751 53 + 173848474 TGAGGAGATGTCCTGGACTCACA--CGGAAACTTAGGGCTACGGAATGAAGGTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6094167 53 +   6154872 TGAGGAGATGTCCTGGACTCACA--CGGAAACTTAGGGCTATGGAATGAAGGTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30544243 53 + 172585720 TGAGGCGATGTCTTAGACTCACC--CAGTAACTCAGGGCTATGGAATGAAGGTAA
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29224529 53 -  71996105 TGAGGAGATGTCCTGGACTCACA--GGGAAACTCAAGGCTATGGAATGGTAGTAA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2949335 53 -   3067355 TGAGGAGATGTCCTGGACTCACA--GGGAAACTCAAGGCTACGGAATGGTGGTAA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            13241 53 +    515838 TGAGGAGATGTCCTGTACCCACA--CAGAAACTCAGGGCTGTGGAGTGAAGGTAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     393283 47 -   1771730 T------ATGTCCTGGACTCACG--CAGAAACTCAGGTCTATGGAGTAAAGGTAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     147928 53 -    383796 TGAGGAGATGTCCTGGACCCACA--CAGTAACTCAAGGCTATGGAATGAAGGTAA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16985647 55 -  18854210 TGAGGAGATATCCTGCACTCACAAGTAGAGACTAAGGGCTATGGAATAATGATAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              982354 47 +  72498081 TGAGGCTATGTCTGGAATTCACA--GA------CGGAGCTATGGAACAGAGGTCA
i canFam3.chr12            I 545 C 0
e calJac3.chr4             30147357 50966 + 171630274 I
e manLeu1.NW_012101121v1      28399  0 +    273075 C
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1283520.000000
s hg38.chr6_GL000254v2_alt  1089519 256 +   4827813 ATTTAAAATAAAACAAGCGGGAGTCACAGATACACTGTCTGGGAAAGTGAAACTTAAGAGCTTTGTGAGTCCTGTTGTAATGCT-TTTAGATGCATTTATATACCAACAGGCCAAAGTCACA-------TTTTTTACCGATTAGATTCCTGATCATTCAGGGGTTACCAAGGTTATGCTACCCACTATAGTTAATAAACAAAAAGCAAACTGGTCTCTAT-------TCTATCTCATGCACTCAGGCACAACTTTTCCAGATT-------------------TAAGGG-GG
s panTro5.chr6             30055158 256 + 175400573 ATTTAAAATAAAACAAGCGGGAGTCACAGATACATTGTTTGGGAAAGTGAAACTTAAGAGCTTTGTGAGTCCTGTTGTAATGCT-TTTAGATGCATTTATATACCAACGGGCCAAAGTCACA-------TTTTTTACCGATTAGATTCCTGATCATTCAGGGGTTACCAAGATTATGCTACCCACTATAGTTAATAAACAAAAAGCAAACTGGTCTCTAT-------TCTATCTCATGCACTCAGGCACAACTTTTCCAGATT-------------------TAAGGG-GG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30285804 256 + 173848474 ATTTAAAATAAAACAAGCGGGAGTCACAGATACATTGTCTGGGAAAGTGAAACTTAAGAGCTTTGTGAGTCCTGTTGTAATGCT-TTTAGATGCATTTATATACCAACGGGCCAAAGTCACA-------TTTTTTACCGATTAGATTCCTGATCATTCAGGGGTTACCAAGATTATGCTACCCACTATAGTTAATAAACAAAAAGCAAACTGGTCTCTAT-------TCTATCTCATGCACTCAGGCACAACTTTTCCAGATT-------------------TAAGGG-GG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6094220 256 +   6154872 ATTTAAAATAAAACAAGCGGGAGTCACAGATACATTGTCTGGGAAAGTGAAACTTAAGAGCTTTGTGAG-CCTGTTGTAATGCT-TTTAGATGCATTTATATACCAACGGGCCAAAGTCACA-------TTTTTTACCGATTAGATTCCTGATCATTCAGGGGTTACCAAGATTATGCTACCCACTATAGTTAATAAACAAAAAGCAAACTGGTCTCTAT-------TCTATCTCATGCACTCAGGCACAACTTTTCCAGATT-------------------TAAGGGTGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30544296 256 + 172585720 ATGTAAAATACAACAAGCAGGAGTCACAGATACATTCTCTGGGAAAGTGAAACTTAGGAGCTTTGTGAGTCCTGTTGTAACCCT-TTTAGACATATTTATATATCAAAGGGCCAAAGTCACA-------TTTTTTACCGATTAGATTCCTGATCATTCAGGGGTTACCAAGATTCTGCTACTCACTGTAGTTAATAAACAAAGAGCAAACTGGTCTCTAT-------TCTATCTCATGCACTCAGGCACAACTTTTCCGGGTT-------------------TAAAGA-AA
i rheMac8.chr4             C 0 N 0
s chlSab2.chr17            29224582 256 -  71996105 ATTTAAAATACAACAAGCGGGAGTCACAGATACATTGTCTGGGAAAGTGAAACTTAGGAGCTTTGTGAGTCTTGTTGTAACGCT-TTTAGACACATTTATATATCAAGGGGCCAAAGTCACA-------TTTTTTACCAATTAGATTCCTGATCATTCAGGGGTTACCAAGATTCTGCTACTCACTGTAGTTAATAAACAAAAAGCAAACTGGTCTCTGT-------TCTATCTCATGCACTTAGGCACAACTTTTGCAGATT-------------------TAAAGA-GA
i chlSab2.chr17            C 0 I 16
s manLeu1.NW_012101121v1      28399 256 +    273075 attTAAAATACAACAAGTGGGAGTCACAGATACATTGTCTGGGAAAGTGAAACTTAGGAGCTCTGTGAGTCCTGTTGTAACGCC-TTTAGACACATTTATATATCAAGGGGCCAAAGTCACA-------TTTTTTACCAATTAGATTCCTGATCATTCAGGGGTTACCAAGATTCTGCTACTCACTGTAGTTAATAAACAAAAAGCAAACTGGTCTCTGT-------TCTATCTCATGCACTCAGGCGCAACTTTTCCAGATT-------------------Taaaga-ga
i manLeu1.NW_012101121v1   C 0 I 18
s colAng1.NW_012115566v1    2949388 256 -   3067355 ATTTAAAATACAACAAGTGGGAGCCACAGATACATTGTCTGGGAAAGTGAAACTTAGGAGCTTTGTGAGTCCTGTTGTAAAGCT-TTTAGACACATTTATGTATCAAGGGGCCAAAGTCACA-------TTTTTTACCGATTAGATTCCTGATCATTCAGGGGTTACCAAGATTCTGCTACTCACTGTAGTTAATACACAAGGAGCAAACTGGTCTCTGT-------TCTATCTCATGCACTCAGGCACAACTTTTCCAGATT-------------------Taaaga-aa
i colAng1.NW_012115566v1   C 0 I 17
s saiBol1.JH378341            13294 272 +    515838 ATTTAAAATACAACAAGCTGGAGTCACAGATACATTGTCTGGGAAAGTGAAACTTAGGAGCTTTATGAGTCCTGTTGTAACGCT-TTTAG--ACATTTGCATATCAAAGGGCCAAAGTCCCA-------TTTTTTACCGATTAGATTCCTGATAATTCAGGGGTTACCAAGATTC-GATACCCACTGTAGTTAATAAACAAAAGGTAAACTGGTCTCTGT-------GCTATCTCATGCGTTCAGGCACAACTTAACCGGATTaaaaacaaaacaaaacaaaacaaaa-aa
i saiBol1.JH378341         C 0 I 5
s cebCap1.NW_016107755v1     393330 260 -   1771730 ATTTAAAATACAACAAGCGGGAGTCACAGATACATTGTCTGGGAAGGTGAAAC--AGGAGCTTTGTGAGTCCTGTTGTAATGCT-TTTAGACACATTTATATATGAAGGGGCCAAAGTCACATTTTTTTTTTTTTACCAATTAGGTTCCTGATCATTCAGGAGTTATCAAGATTCTGCTGCCCACTGTAGTTAATAAACAAAAAGCAAACTGGTCTCTAT-------GCTATCTCATGCTCTCAGGCAAAATTTTTCCATATT--------------------TGGAC-AA
i cebCap1.NW_016107755v1   C 0 I 5
s aotNan1.NW_018496904v1     147981 256 -    383796 ATTTAAAATACAACAAGCTGGAGTCACAGATACATTGTCTGGAAAAGTGGAACTTAGGAGCTTTTTGAGTCCTGTTGTAATGCT-TTTAGACACATTTGCATATCAAGGGGCCAAAGTCGCA-------TTTTTTACCGATTAGATTCCTGATCATTCAGGGGTTACCAAGATTCTGCTACCCACTGTAGTTAATAAACAAAAAGCAAACTGGTCTCTGT-------GCTATCTCATGCGTTCAGGCACAATTTTACCGGATT-------------------TAAGAA-AA
i aotNan1.NW_018496904v1   C 0 I 5
s otoGar3.GL873550         16985702 262 -  18854210 ATTTAAAATACAACGACTCCGAGTATAAGATACATAGTCCAGGAAAGTAAAACTCGGGAGCTTCACAAGTGTAACTATAATGCA-TTCAGACACATTGCTCTATCAAGGGGCCAAACCCAGT-------TCTGTTACAGATTAGATTCCTGATCATTCAGGTGTTACCTAGATTGTGCTACACACTCTGGTTAATGAGCAAGAAGGAAACTGGTCTCTATGAGAGTGTCTGTCAGGTGTGTTCAGACACAACGTCTCCAGGTT-------------------TATAGA-G-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              982401 230 +  72498081 TTTTAAAGCACAAAAACTTAAAGTCTTGGCT--------TGGGAAAGTGAAAAT-GACAGCTTTG-----GTTATTTCAAAGCTGTTTAGGCAAATTTATACA--GAAAGGATAAAATCACT-------ACTTTGACACATGCGAGTCCCGATCTCTCAGGGGTTGTCAAGATTATG------------GTTAAGAAACAAGAAGAAAACTGGCCTCTGTGAAAATCTCTAGCTAGTGC-CCCAAGCACACCTGCCTCAGGTA-------------------CAG------
i canFam3.chr12            C 0 C 0
e calJac3.chr4             30147357 50966 + 171630274 I
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=385444.000000
s hg38.chr6_GL000254v2_alt  1089775 82 +   4827813 AAAAAAA-------ACCCTGTCTTTACACCTACAATCCCAGGGCGAGCTCACTCTCTGGCAACAAGCTCCCTG-GGGTGATTTTTCTTCT
s panTro5.chr6             30055414 82 + 175400573 AAAAAAA-------CCCCTGTCTTTACACCTACAATCCCAGGGCGAGCTCACTCTCTGGCACCAAGCTCCGTG-GGGTGATTTTTCTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30286060 81 + 173848474 AAAAAAA--------CCCTGTCTTTACACCTACAATCCCAGGGCGAGCTCACTCTCTGGCACCAAGCTCCGTG-GGGTGATTTTTCTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6094476 81 +   6154872 AAAAAAA-------CCCCTGTCTTTACACCTACAATCCC-GGGCGAGCTCACTCTCTGGCACCAAGCTCCGTG-GGGTGATTTTTCTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30389162 82 + 172585720 AAAAAAA-------GCCCTGTCTCTACACCTCCATTCCCAGGGCAAGCTCACTCTCTGGCACCAAGCTCTCTG-GGGTGAGTTTTCTTCT
i rheMac8.chr4             N 0 C 0
s chlSab2.chr17            29224854 82 -  71996105 AAAAGAA-------GCCCTGTCTCTACACTTCCATTCCCAGGGCAAGCTCAGTCTCTGGCATCAAGCTCTCTG-GGGTGAGTTTTCTTCT
i chlSab2.chr17            I 16 C 0
s manLeu1.NW_012101121v1      28673 81 +    273075 aaaaaaa-------gCCCTGTCTCTACACCTCCATT-CCAGGGCAAGCTCAGTCTCTGGCACCAAGCTCTCTG-GGATGATTTTTCTTCT
i manLeu1.NW_012101121v1   I 18 C 0
s colAng1.NW_012115566v1    2949661 82 -   3067355 aaaaaaa-------GCCCTGTCTCTACACCTCCATTCCCAGGGCAAGCTCACTCTCTGGCACCAAGCTCTCTG-GGGTGATTTTTCTTCT
i colAng1.NW_012115566v1   I 17 C 0
s saiBol1.JH378341            13571 85 +    515838 acaaaaacaaaacCACCCTGTCTCTACACCTCCATTCCCAGGGTGAGCTCA----CTGGCACCAAGCTCCACG-GGGTGAGTTTTCTTCT
i saiBol1.JH378341         I 5 C 0
s cebCap1.NW_016107755v1     393595 82 -   1771730 ACAAAAA-------ATTTTGTCTCTACACCTCCATTCCCAGGGCGAGTTCATTCTCTCGTAGCAAGCTTCCTC-GGGTGAATTTTCTTCT
i cebCap1.NW_016107755v1   I 5 C 0
s aotNan1.NW_018496904v1     148242 83 -    383796 ACCAAAA------CACCCTGTTTCTACACCTTCATTCCCAGGGCGAGCTCACTCTCTGGCACCAAGCTCCATG-GGGTGAGTTTTCTTCT
i aotNan1.NW_018496904v1   I 5 C 0
s otoGar3.GL873550         16985964 77 -  18854210 ---AAAA-------CCATCATTTCTACACTTCCAGTCCCAGTGCCACTTCA--CTCTAGCGTTAAGTTCCCTG-GGATAAGTTTTCTTCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              982631 81 +  72498081 --AAGAC-------ACCTTGTTCCTTCACCAATTGTCCCACAGTCAGCTCTCTCTCTGGCATCAAATTCCCTGAGAGTAAGTTTCCTTCT
i canFam3.chr12            C 0 I 373
e calJac3.chr4             30147357 50966 + 171630274 I
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=27279.000000
s hg38.chr6_GL000254v2_alt  1089857 6 +   4827813 AGAAGA
s panTro5.chr6             30055496 6 + 175400573 AGAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30286141 6 + 173848474 AGAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6094557 6 +   6154872 AGAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30389244 6 + 172585720 AGAAGA
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29224936 6 -  71996105 AGAAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      28754 6 +    273075 AGAAGA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2949743 6 -   3067355 AGAAGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            13656 6 +    515838 ACAAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     393677 6 -   1771730 AAAAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     148325 6 -    383796 AGAAGA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16986041 6 -  18854210 GGAACA
i otoGar3.GL873550         C 0 C 0
e canFam3.chr12              982712 373 +  72498081 I
e calJac3.chr4             30147357 50966 + 171630274 I
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=797015.000000
s hg38.chr6_GL000254v2_alt  1089863 174 +   4827813 GTACAGGAGGACAGGCAAGGAGTGGGAGGCAGGGAGTCCAGTTCAGGGA-CAGGGATTCCGGGATGAAAAGTGAAGGGAGAGGGCCAGGGACCTTGCCGA-GGGTTTCTCCCTGGTTTCTCAGACAGCTCCTGGGCCAAGACTCAGGGAGACA--CTGAGAC--AGAACGCTTGGCACAA
s panTro5.chr6             30055502 174 + 175400573 GTACAGGAGGACAGGCAAGGAGTGGGAGGCAGGGAGTCCAGTTCAGGGA-CAGGGATTCCGGGATGAAAAGTGAAGGGAGAGGGCCAGGGACCTTGCTGA-GGGTTTCTCCCTGGTTTCTCAGACAGCTCCTGGGCCAAGACTCAGGGAGACA--CTGAGAC--AGAACGCTTGGCACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30286147 174 + 173848474 GTACAGGAGGACAGGCAAGGAGTGGGAGGCAGGGAGTCCAGTTCAGGGA-CAGGGATTCCGGGATGAAAAGTGAAGGGAGAGGGCCAGGGACCTTGCTGA-GGGTTTCTCCCTGGTTTCTCAGACAGCTCCTGGGCCAAGACTCAGGGAGACA--CTGAGAC--AGAACGCTTGGCACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6094563 175 +   6154872 GTACAGGAGGACAGGCAAGGAGTGGGAGGCAGGGAGTCCAGTTcaggga-cagggattccgggatgaaaagtgaagggagagggacagggacCTTGCCGAGGGGTTTCTCCCTGGTTTCTCAGACAGCTCCTGGGCCAAGACTCAGGGAGACA--CTGAGAC--AGAACGCTTGGCACAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30389250 174 + 172585720 GTCCACTGGGACAGGTAAGGAGTAGGAGGCAGGGAGTCCAGTTCTGGGC-CGGGGAGTCGGTGATGAAAAGTGAAGGGAGAGGGACGGGACCCATGCCGT-GTGTTTCTCCCTGGTTTCTCAGACAGCTCCTGGGCCAAGACTCAGGGAGACA--TTGAGAC--AGAGTGCTTGGCACAG
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29224942 174 -  71996105 GTCCACTGGGACAGGTAAGGAGTGGGAGGCAGGGAGTCCAGTTCTGGGA-CGGGGAGTCCGGGATGAAAAGTGAAGGGAGAGGGACGGGGCCCATGCCGA-GGGTTTCTTCCTGGTTTCTCAGACAGCTCCTGGGCCAAGACTCAGGGAGACA--TTGAGAC--AGAGCGCTTGGCACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      28760 154 +    273075 GTCCACTGGGACAGGTAAGGAGTAGGAGGCA---------------------GGGAGTCCGGGATGAAAAGTGAAGGGAGAGGGACGGGGCCCATGCTGT-GTGTTTCTCCCTGGTTTCTCAGACAGCTCCTGGGCCAAGACTCAGGGAAACA--TTGAGAC--AGAGCGCTTGGCACAG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2949749 174 -   3067355 GTCCACTGTGACAGGTAAGGAGTAGGAGGCAGGGAGTCCAGTTCTGGGA-CGGGGAGTCCGCGATGAAAAGTGAAGAGAGAGGGACGGGGCCCATGCCGT-GTGTTTCTCCGTGGTTTCTCAGACAGCTCCTGGGCCAAGACTCAGGCAGACA--TTGAGAC--AGAGCGCTTGGCACAG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            13662 171 +    515838 GTCTAGGGGGACAGGTAAGGAGT--GAGGCAGGGAGTCCAGTTCAGGGA-GGGGGACGCAGGGATGAAAAGTGAAGGGAGAGGGACGGGGCCCATGCCCA-CGGTTTCTCTCTGGTTTCTCAG-CAGCTCCTGGGCCAAGACTCAGGGAGACA--TTGAGAC--AGAGCGCTTGGCACAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     393683 172 -   1771730 GTCCAGGGGGACAGGTAAGGAGTGGGAGGCAGGGAGTCCAGTTCGGGGA-CGGGGATACC-GGATGAAAAGTGAAGGGAGAGGGACGGGGCCCATGCTGA-GGGTTTCTCTCTGGTTTCTCAG-CAGCTCCTGGGCCAAGACTCAGGGAGACA--TTGAGAC--AGAGCGCTTGGCACAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     148331 174 -    383796 ATCCAGGGGGGCCGGGAAGGAGTGGGAGGCATGAAGTCCAGTTCAGGGACCGGGGATGCAGGGATGAAAAGTGAAGGGAGAGGGACGGGACCCATGCTGA-GGGTTTCTCTCTGGTTTCTCAG-CAGCTCCTGGGCCACGACTCAGGGAGACA--TTGAGAC--AGAGCGCTTGGCACAG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16986047 156 -  18854210 GTCCTTGTGGGGAGGAAAGGAGTAAGAAGCAGGGCGTCTAGTTCAGTGA--GAGGATTCAGGGTGGAAGA--GAAAGGGTAGGAGCTGAACTCAGCCTGG-GGA---------------TCAGACAGCTCCTGGGCCAGGATTGAGG-AGACAGCGTGAGGA--ACAGCGCTCGGTGCA-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              983085 173 +  72498081 GTGGAGGGGGTGTGGTGAGGGGTTCAAGGCAGAGACTCAAGCTCAGCAA--GGGGTCTCCGGGAAGGAAGAC--AGGAAAAATGGCTGAGCCCAGTCTGG-TGTCTTCACTTGGTTTCTTCAGAAAGACCCTGGTCCAGGAGTCAGGGGGAAA--GTGTAACAAAGAGCGCTGCACGCAA
i canFam3.chr12            I 373 C 0
e calJac3.chr4             30147357 50966 + 171630274 I
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=145344.000000
s hg38.chr6_GL000254v2_alt  1090037 29 +   4827813 GAGTAGCGGGGTC---AGGGCGA-----AGTCCCAGG
s panTro5.chr6             30055676 29 + 175400573 GAGTAGCGGGGTC---AGGGCGA-----AGTCCCAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30286321 29 + 173848474 GAGTAGCGGGGTC---AGGGCGA-----AGTCCCAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6094738 29 +   6154872 GAGTAGCGGGGTC---AGGGCGA-----AGTCCCAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30389424 28 + 172585720 GAGTAGC-GGGTC---AGGGCGA-----CGTCCCAGG
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29225116 28 -  71996105 GAGGAGC-GGGTC---AGGGCGA-----CGTCCCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      28914 28 +    273075 GAGTAGC-GGGTC---AGGGCGA-----CGTCCCAGG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2949923 28 -   3067355 GCGTAGC-GGGTC---AGTGCGA-----AGTCCTAGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30198323 32 + 171630274 GAACAGGAGGGTCTGAGGGACAA-----AGTTTCAGG
i calJac3.chr4             I 50966 C 0
s saiBol1.JH378341            13833 29 +    515838 GAGGAGCGGGGTC---AGGGCGA-----AGTCCCAGG
i saiBol1.JH378341         C 0 M 523
s cebCap1.NW_016107755v1     393855 29 -   1771730 GACGAGCGGGGTC---AGGGCGA-----AGTCCCAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     148505 29 -    383796 GAGGAGCTGGGTC---AGGACGA-----AGTGCCAGG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16986203 27 -  18854210 --GAAGAGAGGTC---AGGGCAA-----AGTCCCAGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              983258 34 +  72498081 GATGAAAAGTGTC---AGGTCACTCTATGGTCCCGGG
i canFam3.chr12            C 0 C 0
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1373185.000000
s hg38.chr6_GL000254v2_alt  1090066 301 +   4827813 GCCTCAAGCGTGG-CTCTCAGGGTCTCAGGCCCCACAGGCGGTGTATGGGTTGGGGAGGCCCCGCGTTGGGGATTCTCTC-------------------CTCCTTCTCCTAACCTGTGTCGGGTCCTTCTTCCTGGATACTCACCGGGCGGCCCCAGTTCTCACTCCCATTAGGTGACAGGTTTTTAGAGAAGCCAATCAGCGTCGCCGCGGTCCT-GGTTCTAAAGTCCTCGCTCACCCACCCGGACTC--ATTC-----------------TCCCCAGACGCCAAGGATGGTGGTCATGGCGCCCCGAACCCTCTTCCTGCTGCTCTCGGGGGCCCTGA
s panTro5.chr6             30055705 301 + 175400573 GCCTCAAGCGTGG-CTCTCAGGGTCTCAGGCCCCACAGGCGGTGTATGGATTGGGGAGGCCCCGCGTTGGGGATTCTCTC-------------------CTCCTTCTCCTAACCTGTGTCGGGTCCTTCTTCCTGGATACTCACCGGGCGGCCCCAGTTCTCACTCCCATTAGGTGACAGGTTTTTAGAGAAGCCAATCAGCGTCGCCGCGGTCCT-GGTTCTAAAGTCCTCGCTCACCCACCCGGACTC--ATTC-----------------TCCCCAGACGCCAAGGATGGTGGTCATGGCGCCCCGAACCCTCTTCCTGCTGCTCTCGGGGGCCCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30286350 301 + 173848474 GCCTCAAGCGTGG-CTCTCAGGGTCTCAGGCCCCACAGGCGGTGTATGGATTGGAGAGGCCCCGCGTTGGGGATTCTCTC-------------------CTCCTTCTCCTAACCTGTGTCGGGTCCTTCTTCCTGGATACTCACCGGGCGGCCCCAGTTCTCACTCCCATTAGGTGACAGGTTTTTAGAGAAGCCAATCAGCGTCGCCGCGGTCCT-GGTTCTAAAGTCCTCGCTCACCCACCCGGACTC--ATTC-----------------TCCCCAGACGCCAAGGATGGTGGTCATGGCGCCCCGAACCCTCTTCCTGCTGCTCTCGGGGGCCCTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6094767 301 +   6154872 GCCTCAAGCGTGG-CTCTCAGGGTCTCAGGCCCCACAGGCGGTGTATGGATTGGGGAGGCCCCGCCTTGGGGATTCTCTC-------------------CTCCTTCTCCTAACCTGTGTCGGGTCCTTCTTCCTGGATACTCACCGGGCGGCCCCAGTTCTCACTCCCATTAGGTGACAGGTTTTTAGAGAAGCCAATCAGCGTCGCCGCGGTCCT-GGTTCTAAAGTCCTCGCTCACCCACCCGGACTC--ATTC-----------------TCCCCAGACGCCAAGGATGGTGGTCATGGCGCCCCGAACCCTCTTCCTGCTGCTCTCGGGGGCCCTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30389452 315 + 172585720 GCTCCAGGAGTGG-CTCTCAGGGTCTCAGGCCCCACAGGCAGTGTATGGATTGGGGAGGCCCCGTGTTGAGGGTTCCCCATCTCCGCAGAGTTTCT---CTCCTTCTCCCAACCTGTGTCGGGTCCTTCTTCCTGGATTCTCACCGGGCGACTCCAGTTCTCACTCCCATTAGGTAACAGGTTTTTAGAGAAGC----CAGAGTCGCCGCGGTCCC-GGTTCTAAAGTCCTCGCTCACCCACTCGGACTCAGATTC-----------------TCCCCAGACGCCACGGATGGTGGTCATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCGGGGGCTCTGG
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29225144 315 -  71996105 GCCCCAGGCGTGG-CTCTCAGGGTCTCAGGCCCCACAGGCAGTGTATGGATTGGGGAGGCCCTGTGTTGAGGATTCCCTACCTCCGCAGAGTTTCT---CTCCTTCTCCCAACCTGTGTCGGGTCCTTCTTCCTGGATTCTCACCGGGCGACTCCAGTTCTCACTCCCATTAGGTAACAGGTTTTTAGAGAAGC----CAGAGTCGCCGCGGTCCG-GGTTCTAAAGTCCTCGCTCACCCACTCGGACTCAGATTC-----------------TCCCCAGACGCCAAGGATGGTGGTCATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCGGGGGCTCTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      28942 314 +    273075 GCCCCAGGCGTGG-CTCTCAGGGTCTCAGGCCCCAC-GGCAGTGTATGGATTGGGGAGGCCCCGTGTTGAGGATTCCCCATCTCCGCAGAGTTTCT---CTCCTTCTCCCAACCTGTGTCGGGTCCTTCTTCCTGGATTCTCACCGGGCGACTCCAGTTCTCACTCCCATTAGGTAACAGGTTTTTAGAGAAGC----CAGAGTCGCCGCGGTCCC-AGTTCTAAAGTCCTCACTCACCCACTCGGACTCAGATTC-----------------TCCCCAGACGCCAAGGATGGTGGTCATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCGGGGGCTCTGG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2949951 318 -   3067355 GCTCTTGGCGTGG-CTCTCAGGGTCTCAGGCCCCACAGGCAGTGTATGGATTGGGGAGGCCCCGTGTTGAGGATTCCCCATCTCCGCAGAGTTTCTCTCCTCCTTCTCCCAACCTGTGTCTGGTCCTTCTTCCTGGATTCTCACCGGGCGACTCCAGTTCTCACTCCCATTAGGTGACAGGTTTTTAGAGAAGC----CAGAGTCGCCGCGGTCCC-GGTTCTAAAGTCCTCGCTCACCCACTCGGACTCAGATTC-----------------TCCCCAGACGCCAAGGATGGTGATCATGGCGCCCTGAACCCTCCTCCTGCTGCTCTCGGGGGCTCTGG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30198355 300 + 171630274 -TCCCAGGCGTGG-CTCTCAGGGTCTCAGGCC---------AAGTCTATATTGAGAAGATGCAGGGCTGAGGATTCCCCA-CTCCCCTAAGTTTCA---CT---TCTCCCAACC--TGTCAAGTCCTTCTTCCTGGATACTCATGAGGCCTCCTCAGTTCCCGCTCCCATTGGGTGCCGTGTTTCTAGATAAGCCAATCGGCGTCTCCGCGATCCCGGGTTCTGAAGCCCCCAGTCACCTACCTGGAGTCAGATTC-----------------TCCCCAGACGCCGAAGCTGG-GGTCATGGCGCCCCGAA---TCCTCCTGCTGCTCTCGGGGGCCCTGG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     393884 318 -   1771730 GTCCCAGGGGTGG-CTCTGACGGTCTCAGACCCCGAAGGCGGTGTATGGATTGGGGAGGCGCAGCGTTGGGGACTCCTCATCTCCGCAGAGTTTCT---CTTCCTCTCCCAACCTGTGTCGGGTCCTTCTTCCTGGATACTCACGACGCGGACCCAGTTCCCACTCCCATTGGGTG-TGGGTTTCTAGAGAAGCCAATCAGCGTCGCCGCGGTCCC-GGTTCTAAGGTCCCCAGTCACCCACCCGGACTCAGATTC-----------------TCCCCAGACGCCGAGGATGGCGCTCATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCCGGGGCCCTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     148534 274 -    383796 -GCCCAGACGTGG-CTCTCAGGGTCTCAGGCACCAAAGGAGGTGTATGGATTGGGGATGCGCAGCGTTGGGGATTCCTCATCTCCGC--AGTTTCT---CTTCCTCTCCTCACTTGTGCCGGGACCTTCTTCCTGGATACTCACGATGTGAACCAAGTTCCCATTCCCACTGGGTGTCGGCTTCCTAGAGAAGCCAATCAGC-TCACCGCAGTCCT-CGTTCTAAAGTCCCGAATCACC----------------------------------------------------------CATTGCGCCCCGAACCCTCCTCCTGATGCTCTTGGGGGCCCTGG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16986230 308 -  18854210 -TTCTGGGCGTGGAATCTCAGGGATCTCAGTCCCGAGGGCGGTTTG-GGGTGGGGAAAGCTTAGCGCTGGGGATTCCCCT-CTCAGCAGAGTTTTGCTTCTCCTTCTCCCAACCCGTGTCTGGTCTTTTTTCGTAAATACTGATGAAGTAAA-CCAGTTCTCATTCCCACTGGGTG-TGGGTTTCTAGAGAAGCTAATTAGCGTCGCTGCAGTCCTCAGTTATTAAGTCTTGGCAGAGCTACTCGTACTC----------------------------TGACTCCAAGGATGGGGATCACCGTGTCCAGATCCCTCCTTCTGCTTCTGTCGGCTGCCCTGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              983292 332 +  72498081 ---GAGGGCGAGG-CTCTCAGGCTCTCAGGCCCCA--GGGCGGGTCCGGGGCGGGGACGCTCAG-GCTGGGGAGTCCCCA-CCTCCCCGGGTTTCACTTCTCCGTCTCCCAACCTGGCTCAGGGCCCCCTGCCTGGAGACTCGTGACGCAGCCCCAGCGCGCACTCCCATTGGGTGCAGCGTTTCTGGAGGAGCCAATCAGCGGCACCGGGTCCCG-GGCTCGAAAGCCTCCGCCGCCGCCTCCGCCCCCCAGTCCGGCGGCGACGGCCAGTGTCCCCGGAGCCCGGAGATGGAGGTGGTGATGCCGCGAGCCCTCCTCGTGCTGCTGTCGGCGGCCCTGG
i canFam3.chr12            C 0 C 0
e saiBol1.JH378341            13862 523 +    515838 M
e cerAty1.NW_012002711v1     736963 5905 +    766320 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=242705.000000
s hg38.chr6_GL000254v2_alt  1090367 40 +   4827813 CCCTGACCGAGACCTGGGCGGGTGAGTGCGGGGTCAGGAG
s panTro5.chr6             30056006 40 + 175400573 CCCTGACCGAGACCTGGGCGGGTGAGTGCGGGGTCAGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30286651 40 + 173848474 CCCTGACCGAGACCTGGGCGGGTGAGTGCGGGGTCAGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6095068 40 +   6154872 CCCTGACCGAGACCTGGGCGGGTGAGTGCGGGGTCAGGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30389767 36 + 172585720 CCCTGACAGAGACCTGGGCGGGTGAGTGCGGGATCG----
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002711v1     742868 36 +    766320 CCCTGACAGAGACCTGGGCGGGTGAGTGCGGGATCG----
i cerAty1.NW_012002711v1   I 5905 C 0
s chlSab2.chr17            29225459 40 -  71996105 CCCTGACAGACACCTGGGCGGGTGAGTGTGGGATCGGGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      29256 40 +    273075 CCCTGACAGAGACCTGGGCGGGTGAGTGCGGGGTCGGGAG
i manLeu1.NW_012101121v1   C 0 I 56
s colAng1.NW_012115566v1    2950269 36 -   3067355 CCCTGACAGACACCTGGGAGGGTGAGTGCCGGATCG----
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30198655 40 + 171630274 CCCTGACCAAGACCTCGGCGAGTGAGTTAGGGGTCGGGAG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     394202 40 -   1771730 CCCTGACCGAGACCTGGGCAGGTGAGTGCGGGGTCGGGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     148808 40 -    383796 CCCTGACTGAGACCTGAGCAGGTGAGTGCGGGGTCGCAAG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16986538 40 -  18854210 TCCTGACCGAGGCCTGGGAGGGTGAGTGTTGGGTCGGGAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              983624 38 +  72498081 CCGTGACCCTGACCCGGGCGGGTGAGTGCGGG--CGGGAG
i canFam3.chr12            C 0 C 0
e saiBol1.JH378341            13862 523 +    515838 M
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=218415.000000
s hg38.chr6_GL000254v2_alt  1090407  59 +   4827813 GGAAACGGCCCCTGCGCGGAGGAGGGAGGGGCCC---------------------------GCCTGGCGGG-----G--------------------------------------GCGCA---------GGACTCGGC
s panTro5.chr6             30056046  59 + 175400573 GGAAACGGCCCCTGCGCGGAGGAGGGAGGGGCCG---------------------------GCCCGGCGGG-----G--------------------------------------GCGCA---------GGACCCGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30286691  59 + 173848474 GGAAACGGCCCCTGCGCGGAGGAGGGAGGGGCCA---------------------------GCCCGGCGGG-----G--------------------------------------GCGCA---------GGACCCGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6095108  59 +   6154872 GGAAACGGCCCCTGCGCGGAGGAGGGAGGGGCCG---------------------------GCCCGGCGGG-----G--------------------------------------GCGCA---------GGACCGGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30389803  59 + 172585720 GGAGATGGCCTCTGCGGGGAGGGGCCAGGGGCCC---------------------------GCCCAACGGT-----G--------------------------------------GTGCA---------GGACCCGGG
i rheMac8.chr4             C 0 I 1
s cerAty1.NW_012002711v1     742904  59 +    766320 GGAGATGGCCTCTGCGGGGAGGGGCCAGGGGTCC---------------------------GCCCAAGGGT-----G--------------------------------------GTGCA---------GGACCCGGG
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17            29225499  55 -  71996105 ----ATGGCCTCTGCGGGAAGGGGCCAGGGGTCC---------------------------GCCCAACGGT-----G--------------------------------------GTGCA---------GGACCCGGG
i chlSab2.chr17            C 0 I 1
s colAng1.NW_012115566v1    2950305  59 -   3067355 GGAGATGGCCTCTGCGGGGAGGGGCCAGGGGCCC---------------------------GCCCGACTGT-----G--------------------------------------GTGCA---------GGACCAGAG
i colAng1.NW_012115566v1   C 0 I 6
s calJac3.chr4             30198695  59 + 171630274 GTAAACAGCCTCTGCGGGGAGGAGCGAGGGGACC---------------------------GTCCCGCGGG-----G--------------------------------------GCGCA---------GGACCCGGG
i calJac3.chr4             C 0 I 1
s cebCap1.NW_016107755v1     394242  64 -   1771730 GGAAACGGCTTCTGCGGGGAGGAGCGAGGGGCCC---------------------------GCCGGGCGGGGGGGTG--------------------------------------GCGCA---------GGACCTGGG
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496904v1     148848  58 -    383796 AGAAACGGCCTCTGC-GGGAGAAGCGAGAGCCCC---------------------------GCCCCCCGGG-----G--------------------------------------GCGCA---------GGACCCGGG
i aotNan1.NW_018496904v1   C 0 I 1
s otoGar3.GL873550         16986578  58 -  18854210 GGAAACGGGCTCTGCGGGGAGG-GCAAAGGGACC---------------------------GCCTGGCGGG-----G--------------------------------------ACGCA---------GGACCCGGG
i otoGar3.GL873550         C 0 I 1
s canFam3.chr12              983662 131 +  72498081 --CGAGGGGACCGGCGGGCGGGGACGCGGGACCCCGGGAAGCCGCCTCTccgccgcccccggccccccgcg-----gcctgggctccccggtccctcccgcctccgccccgccccgggcatctcccctgggccccggg
i canFam3.chr12            C 0 C 0
e saiBol1.JH378341            13862 523 +    515838 M
e manLeu1.NW_012101121v1      29296  56 +    273075 I
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=339752.000000
s hg38.chr6_GL000254v2_alt  1090466 55 +   4827813 AGCCGCGCCGGGAGGAGGGTCGG------GC-GGGTCTCAACCCCTCCTCG--CCCCCAGGCTC
s panTro5.chr6             30056105 55 + 175400573 AGCCGCGCCGGGAGGAGGGTCGG------GC-GGGTCTCAACCCCTCCTCG--CCCCCAGGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30286750 55 + 173848474 AGCCGCGCCGGGAGGAGGGTCGG------GC-GGGTCTCAACCCCTCCTCG--CCCCCAGGCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6095167 55 +   6154872 AGCCGCGCAGGGAGGAGGGTCGG------GC-GGGTCTCAACCCCTCCTCG--CCCCCAGGCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30389863 55 + 172585720 AGCCGCGCGGGGAGGAGGGTCGG------GC-GGGTCTCAGCCCCTCCTCG--CCCCCAGGCTC
i rheMac8.chr4             I 1 C 0
s cerAty1.NW_012002711v1     742964 55 +    766320 AGCCGCGCGGGGAGGAGGGTCGG------GC-GGGTCTCAGCCCCTCCTCG--CCCCCAGGCTC
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17            29225555 55 -  71996105 AGCCGCGCGGGGAGGAGGGTGGG------GC-GGGTCTCAGCCCCTCCTCG--TCCCCAGGCTC
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012101121v1      29352 55 +    273075 AGCTGCGCGGGGAGGAGGGTCGG------GC-GGGTCTCAGCCCCTCCTCG--CCACCAGGCTC
i manLeu1.NW_012101121v1   I 56 C 0
s colAng1.NW_012115566v1    2950370 55 -   3067355 CGCCGCGCCAGGAGGAGGGTCGG------GC-GGGTCTCAGCCTCTCCTCG--CCCCCAGGCTC
i colAng1.NW_012115566v1   I 6 N 0
s calJac3.chr4             30198755 53 + 171630274 AGCAGCCCCGAGAGGAGGGTCGG---------CGGTCTCAGCCCCTCCTCG--TCCCCAGGCTC
i calJac3.chr4             I 1 C 0
s cebCap1.NW_016107755v1     394307 53 -   1771730 AGCCGCGCCGGGAGGAGTGTCGG---------CGGGTCTCACCCCTCCTCG--CCCCCAGGCTC
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496904v1     148907 55 -    383796 AGCCACGCTGTGAGAAGGGTCGG------GT-GGGTCTCAGCCCCTCCTCG--CCCCCAGGCTC
i aotNan1.NW_018496904v1   I 1 C 0
s otoGar3.GL873550         16986637 59 -  18854210 AGCCGCACCGG--GGAGGGTCGGCCCGGGTC-GGGTTTCAGCCCCTACGCG--TCCCCAGGCTC
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12              983793 53 +  72498081 ccccgcggcgggagg-gggtcgg------gcggggTCTCAGCC----CTCGGCTCCGCAGGCTC
i canFam3.chr12            C 0 C 0
e saiBol1.JH378341            13862 523 +    515838 M
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=308476.000000
s hg38.chr6_GL000254v2_alt  1090521 52 +   4827813 CCACTCCATGAGGTATTTCAGCGCCGCCGTGTCCCGGCCCGGCCGCGGGGAG
s panTro5.chr6             30056160 52 + 175400573 CCACTCCATGAGGTATTTCAGCGCCGCCGTGTCCCGGCCCGGCCGCGGGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30286805 52 + 173848474 CCACTCCATGAGGTATTTCAGCGCCGCCGTGTCCCGGCCCGGCCGCGGGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6095222 51 +   6154872 CCACTCCATGAGGTATTTCAGCGCCGCCGTGTCCCGG-CCGGCCGCGGGGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30389918 52 + 172585720 CCACTCCATGAGGTACTTCAGCGCTGCCGTGTCCCGGCCCGGCCGCGGGGAG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002711v1     743019 52 +    766320 CCACTCCATGAGGTACTTCAGCGCTGCCGTGTCCCGGCCCGGCCGCGGGGAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29225610 52 -  71996105 CCACTCCATGAGGTACTTCAGCGCCGCCGTGTCCCGGCCCGGCCGCGGGGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      29407 52 +    273075 CCACTCCATGAGGTACTTCAGCGCTGCCGTGTCCCGGCCCGGCCGCAGGGAG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2821288 52 -   3067355 CCACTCCTTCAGTTATTTCCACACCGCCGTGTCCCGGCCTGGCCGCGGGGAG
i colAng1.NW_012115566v1   N 0 C 0
s calJac3.chr4             30198808 52 + 171630274 CCACTCCTTCAGCCGTTTCCTCACCACCGTGTCCCGGCCCGGCCGCGGGGAG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     394360 52 -   1771730 CCACTCCATGAGGTATTTCAGCACCGCCGTGTCCCGGCCCGGCCGCGGGGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     148962 25 -    383796 CCAGTTCGTGAGGTATTTGAGCACC---------------------------
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16986696 49 -  18854210 TCACTCCCTGCGGTGTTTCCATACCACCGT---CCGGCCCAGCTGCGGTGAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              983846 52 +  72498081 CCACTCCCTGAGGTTTTTCCACACCGCCGTGTCCCGGCCCGGCCGCGGGGAC
i canFam3.chr12            C 0 C 0
e saiBol1.JH378341            13862 523 +    515838 M
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1185871.000000
s hg38.chr6_GL000254v2_alt  1090573 165 +   4827813 CCCCGCTTCATCGCCATGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACTCGGCGTGTCCGAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGAAGAGGAGACACGGAACACCAAGGCCCACGCACAGACTGAC
s panTro5.chr6             30056212 165 + 175400573 CCCCGCTTCATCGCCATGGGCTACGTGGACGACACGCAGTTCGTGTGGTTCGACAGCGACTCGGCGTGTCCGAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGAAGAGGAGACACGGAACACCAAGGCCCACGCACAGACTGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30286857 165 + 173848474 CCCCGCTTCATCGCCATGGGCTACGTGGACGACACGCAGTTCGTGTGGTTCGACAGCGACTCGGCGTGTCCGAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGAAGAGGAGACACGGAACACCAAGGCCCACGCACAGACTGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6095273 164 +   6154872 CCCCGCTTCATCGCCATGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACTCGGCGTGTCCGAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGAAG-GGAGACACGGAACACCAAGGCCCACGCACAGACTGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30389970 165 + 172585720 CCCCGCTTCATCCCCGTGGGCTACGTGGACAACACGCAGTTCGTGCGGCTCGATAGCGACGCTGCAAGTCCGAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGAAGAGGAGACACGGAACATCAAGGCCCACGCACACACTGAC
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002711v1     743071 165 +    766320 CCCCGCTTCATCTCCGTTGGCTATGTGGACGACACGCAGTTCGTGCGGCTCGATAGCGACTCTGCGAGTCCGAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGCGGCCGGAGTATTGGGAAGAGGAGACACGGATCGCCAAGGCCCACGCACAGACTGAC
i cerAty1.NW_012002711v1   C 0 M 509
s chlSab2.chr17            29225662 165 -  71996105 CCCCGCTTCATCCCTGTGGGCTACGTGGACGACACGCAGTTCGTGCGGCTCGATAGCGACGCTGCGAGTCCGAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGAAGAGGAGACACGGATCGCGAAGGCCCACGCACAGACTGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      29459 165 +    273075 CCCCGCTTCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGCTCGAAAGCGACGCCGCGAGTCCGAGGATGGAGCCGCGGGCGCCGTGGATGAAGCAGGAGCGGCCGGAGTATTGGGAAGAGGAGACACGGAGCACCAAGGCCCACGCACACACTGAC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2821340 165 -   3067355 CCCCGGTACCTCGAAGTTGGCTACGTGGACGACACGCAGTTCGTGCTGTTCGACAGCGACGCCGCGAGTCCTAGGATGGAGCCGAAGGTGCCGTGGGTGGAGCAGGAGGAGCCGGAGTATTGGGAACTGCACACAGAGCACGCCAAGGCCCACGCACGGCTTTTC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30198860 165 + 171630274 CCCCGGCACATCGCCGTAGGTTATGTGGACGACACGCAGTTCATGCGGTTCGACAGCGACGCCGCGATTCCGCGGATGGAGCCGCGGGCGCCGTGGGCGGAGCAGGAGGGACCGGAGTATTGGGACCTGCTGACACGGAGAACAGAGGCCTGCGCACAGGCTTGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341            14392 165 +    515838 CCCCGCGTCGTCTCCGTGGGCTACATGGACGACACGCAGACAGCGCAATTCGACAGGGAAGCCTCGAGTCCGAGGACGGAGCCGCGGGCGCCGTGGATGGAGAAGGAGGGGCCAGAGTACTGGGACCCGGGGACACGGATGTTCAAGGACACCGCACAGAGTTTC
i saiBol1.JH378341         M 523 C 0
s cebCap1.NW_016107755v1     394412 165 -   1771730 CCCCGGTACATCGAAGTCGGCTACGTGGACGACACGCAGATCGTGCGGTTCGACAGCGACGCCGCGATTCCGAGGATGGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCGGAGTATTGGGAGGAGCAGACACGGATCGCCAAGGCCAACGCACAGACTGAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     148987 164 -    383796 -CCCGCTTCATCTCCGTGGGCTACATGGACGACAGGCAGATCGCGGGGTTCGACAGCGACGCCTAGAGTCTGAGGGTGGAGCCGCGGGCGCCATGGATGGAGAAGGAGGGGCCGGAGTATTGGGGCCCGGGGACTCGGATTTTCAAGGACACCGCACAGAGTTTC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16986745 164 -  18854210 CCCTGGTTCATTACCGTAGGCTACGTGGACTACACGCAGTTCGTGCCGTTCGACAGCTACGCGGATTATCCGAGGATGGAGCCGCGGGCGCAGTGGGTAGAACGGAAGGGGCCAGAGTATTGGGA-GAGGGCACACAGATCTCCAAGGGCAACGCACAGGTTTAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              983898 165 +  72498081 CCCCTCTACATCTCTGTGGGCTACGTGGACGACACGCAGTTCCTGCGGTTCAACAGCGACGCGGCGAGTCCGAAGGTGGAGCCGCGGGCGCGGTGGATGGAGCAGGAGGGGCCGGAGTTTTGGGAGGAGCAGACGGAGATCGCCAAGGTGCACGCCCAGACCTCC
i canFam3.chr12            C 0 C 0
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=838226.000000
s hg38.chr6_GL000254v2_alt  1090738 152 +   4827813 AGAATGAACCTGCAGACCCTGCGCGGCTACTACAACCAGAGCGAGGCCAGTGAGTAACTC-CGGCCCAGGGAGCAGATCACGACCCC-CACCTCCATGCCCCACGGACGGCCC-GGGTACTCCCGAGTCTCCGGGTCTGGGATCCACCCCGAGGC
s panTro5.chr6             30056377 152 + 175400573 AGAATAAACCTGCAGACCCTGCGCGGCTACTACAACCAGAGCGAGGCCAGTGAGTAACCC-CGGCCCAGGGCGCAGATCACGACCCC-CACCTCCATGCCCCACGGACGGCCC-GGGTACTCCCGAGTCTCCGGGTCTGGGATCCACCCCGAGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30287022 152 + 173848474 AGAATAAACCTGCAGACCCTGCGCGGCTACTACAACCAGAGCGAGGCCAGTGAGTAACCC-CGGCCCAGGGCGCAGATCAGGACCCC-CACCTCCATGCCCCACGGACGGCCC-GGGTACTCCCGAGTCTCCGGGTCTGGGATCCACCCCGAGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6095437 152 +   6154872 AGAATGAACCTGCAGACCCTGCGCGGCTACTACAACCAGAGCGAGGCCAGTGAGTAACCC-CGGCCCAGGGCGCAGATCACGACCCC-CACCTCCATGCCCCACGGACGGCCC-GGGTACTCCCGAGTCTCCGGGTCTGGGATCCACCCCGAGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30390135 153 + 172585720 AGAGTGAACCTGCGGACCCTGCGCAGCTGCTACAACCAGAGCCAGGCCGGTGAGTGACCC-CGGCCTGGGGCGCCGATCACGACCCCCCACCTCCATGCCCTACGGACGACCC-GGGTACTCCCGAGTCTCCAGGTCTGAGATCCACCCCGAGGC
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29225827 153 -  71996105 AGAGTGAACCTGCGGACCCTGCGCAGCTGCTACAACCAGAGCTAGGCCGATGAGTGACCC-CGGCCCGGGGCGCAGATCACGACCCCCCACCTCCATGCCCTACGGACGACCG-GGTTACTCCAGAGTCTCCAGGTCTGAGATCCACCCCGAGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      29624 153 +    273075 CAAGTGAACCTGCGGACCCTGCGCAGCTACTACAACCAGAGCCAGGCCGGTGAGTGACCC-CGGCCCGGGGCGCAGGTCACGACCCCCCACCTCCATGCCCTACGGACGACCA-GGGTACTCCCGAGTCTCCAGATCTGAGATCCACCCCGAGGC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2821505 148 -   3067355 CGAGTGTGGCTGCGGACCCTGCTCCGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCC-TGGCCT-GGGCACAGATCACGATCCC---TCCTCATCCCCTACGGACGGCCC-GGGT-CGCTCGAGTCTCCGGGTCTGAGATCCACCCCGAGGC
i colAng1.NW_012115566v1   C 0 N 0
s calJac3.chr4             30199025 150 + 171630274 CGAGTGAGCCTGCAGATCATACGCGGCCACTACAACCAGAGCGAGGCCGGTGAGTGACCC-TGGCTCGGGGCGCAGGTAAAGACCCC---TCCTCATCCTCCACGGACGGCCC-GGGTCCCACCGAGTCTCTGGGCCCAAGATCCACCCCGAGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341            14557 150 +    515838 CCAGTGAACCTGCGGAACCTGCGCGGCTCCTACAACCAGAGCGAGGCCGGTGACTGACGC-TGGTCCGGGGCGCAGGTCACGACCCC---ACCCCGTTCCCGACGGACAGCCT-GGGTCACCCCGAGTCTCCGGGTCCGAGATCCACCGCGAGAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     394577 150 -   1771730 CGAGTGAACCTGCGGATCGCGCTCGGCTACTACAACCAGAGCGAGGCTGGTGAGTGAACC-CCGCCTGGGGCACAGGACACGACCCC---TCCCCATTTCCCACCGACGGCCA-GGGTCGTCTCGAGTCTCTGGGTCCAAGATCCACCCCGGGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     149151 150 -    383796 CGAGTGAACCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTGACTGACCC-CGGTCCAGGACGCAGGTCACGACCCC---TCCCCGTTCCCGACTGATGGCCT-GGGTCACCCCGAGTCTCCGGGTCCGAGATCCACCCCGAGAC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16986909 149 -  18854210 CGTAAAGGCCTGGAGGCCCTGCGCGGCTACTACAACCAGAGCGAGGACGGTGAGTGACCCGTAGCCCAGGTCACAGGTCATACCCCC-----TCCGCACCCCACAGACAAGCC-CGCGTCGCCGGAGTCTACAGGTCCGACAGTCACCTGGGGAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              984063 147 +  72498081 CGATCCAACCTGCAGACGGCCCTCGGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCC-GGGCC--GGGTCCAGTTCACGAGTCC-----ATGAACCCCCTTGCACAGCCTGGGGTCTCCCCGAGTTCCCGGGTCGGAGATTGACCCCCGGGC
i canFam3.chr12            C 0 C 0
e cerAty1.NW_012002711v1     743236 509 +    766320 M
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=87896.000000
s hg38.chr6_GL000254v2_alt  1090890 22 +   4827813 CGCGGGACCCGCCCAGACCCTC
s panTro5.chr6             30056529 22 + 175400573 CGCGGGACCCGCCCAGACCCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30287174 22 + 173848474 CGCGGGACCCGCCCAGACCCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6095589 22 +   6154872 CGCGGGACCCGCCCAGACCCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30390288 22 + 172585720 CGCGGGACTCGCCCAGATCCTC
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29225980 22 -  71996105 CGCGGGACTCGCCCAGACCCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      29777 22 +    273075 CGCGGGACTCGCCCAGACCCTC
i manLeu1.NW_012101121v1   C 0 C 0
s calJac3.chr4             30199175 21 + 171630274 T-CAGAACCCGGTCGTATCCTG
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341            14707 22 +    515838 CGGGGGACCCGCCCAGACCCTC
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     394727 22 -   1771730 TGCGGGACCCGCCCCGCCCCGC
i cebCap1.NW_016107755v1   C 0 I 22
s aotNan1.NW_018496904v1     149301 22 -    383796 TGGGGGACCCGTCCAGACCCTC
i aotNan1.NW_018496904v1   C 0 I 1
s otoGar3.GL873550         16987058 21 -  18854210 TGCGATTCCC-CTGAGACCTTC
i otoGar3.GL873550         C 0 I 1
s canFam3.chr12              984210 21 +  72498081 -CAGGAGACCGTCCTGGCCCCC
i canFam3.chr12            C 0 C 0
e cerAty1.NW_012002711v1     743236 509 +    766320 M
e macNem1.NW_012012100v1     159184 3367 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1636.000000
s hg38.chr6_GL000254v2_alt  1090912 1 +   4827813 T
s panTro5.chr6             30056551 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30287196 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6095611 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30390310 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     162551 1 +   1495729 G
i macNem1.NW_012012100v1   I 3367 C 0
s chlSab2.chr17            29226002 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      29799 1 +    273075 T
i manLeu1.NW_012101121v1   C 0 C 0
s canFam3.chr12              984231 1 +  72498081 T
i canFam3.chr12            C 0 C 0
e saiBol1.JH378341            14729 1 +    515838 I
e otoGar3.GL873550         16987079 1 -  18854210 I
e aotNan1.NW_018496904v1     149323 1 -    383796 I
e cebCap1.NW_016107755v1     394749 22 -   1771730 I
e calJac3.chr4             30199196 1 + 171630274 I
e cerAty1.NW_012002711v1     743236 509 +    766320 M
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=70575.000000
s hg38.chr6_GL000254v2_alt  1090913 17 +   4827813 ACCTGGGAGAACCCCAA--
s panTro5.chr6             30056552 16 + 175400573 ACCTGGGAGAACCCCA---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30287197 16 + 173848474 ACCTGGGAGAACCCCA---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6095612 16 +   6154872 ACCTGGGAGAACCCCA---
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30390311 16 + 172585720 ACCTGGGAGAAGCCCA---
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     162552 16 +   1495729 ACCCTGGAGAGCCCCA---
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29226003 16 -  71996105 ACCTGGGAGAAGCCCA---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      29800 16 +    273075 ACCTGGGAGAAGCCCA---
i manLeu1.NW_012101121v1   C 0 C 0
s calJac3.chr4             30199197 16 + 171630274 ACCTGAGAGGGCCCCA---
i calJac3.chr4             I 1 I 1
s saiBol1.JH378341            14730 16 +    515838 ACCTGGGAGAGCCCCA---
i saiBol1.JH378341         I 1 I 1
s aotNan1.NW_018496904v1     149324 16 -    383796 ACCTGGGAGAGCCCCA---
i aotNan1.NW_018496904v1   I 1 I 1
s otoGar3.GL873550         16987080 16 -  18854210 ACCTGGGAAGGGTCAG---
i otoGar3.GL873550         I 1 I 1
s canFam3.chr12              984232 18 +  72498081 ACGCGGGACGAGCCTG-CA
i canFam3.chr12            C 0 C 0
e cebCap1.NW_016107755v1     394749 22 -   1771730 I
e cerAty1.NW_012002711v1     743236 509 +    766320 M
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=2100.000000
s hg38.chr6_GL000254v2_alt  1090930 1 +   4827813 G
s panTro5.chr6             30056568 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30287213 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6095628 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30390327 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     162568 1 +   1495729 G
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29226019 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      29816 1 +    273075 C
i manLeu1.NW_012101121v1   C 0 C 0
s calJac3.chr4             30199214 1 + 171630274 G
i calJac3.chr4             I 1 C 0
s cebCap1.NW_016107755v1     394771 1 -   1771730 G
i cebCap1.NW_016107755v1   I 22 C 0
s otoGar3.GL873550         16987097 1 -  18854210 G
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12              984250 1 +  72498081 G
i canFam3.chr12            C 0 C 0
e saiBol1.JH378341            14746 1 +    515838 I
e aotNan1.NW_018496904v1     149340 1 -    383796 I
e cerAty1.NW_012002711v1     743236 509 +    766320 M
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=55479.000000
s hg38.chr6_GL000254v2_alt  1090931 22 +   4827813 --------GCGCCTTTA-------------------------CCAAAATCCCCGC-------------------------------------
s panTro5.chr6             30056569 22 + 175400573 --------GCGCCTTTA-------------------------CCAAAATCCCTGC-------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30287214 22 + 173848474 --------GCGCCTTTA-------------------------CCAAAATCCCTGC-------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6095629 22 +   6154872 --------GCGCCTTTA-------------------------CCAAAATCCCTGC-------------------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30390328 22 + 172585720 --------GCGCCTTTA-------------------------CCAAAATCCCTGT-------------------------------------
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     162569 45 +   1495729 --------GAGCCTTTA-CCCGGTTTCATCTTCAGTTGAGG-CCAAAATCTCTGC-------------------------------------
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29226020 22 -  71996105 --------GCGCCTTTA-------------------------CCAAAATCCCTGC-------------------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      29817 22 +    273075 --------GCGCCTTTA-------------------------CCAAAATCCCTGC-------------------------------------
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2950880 22 -   3067355 --------GCGCCTTTA-------------------------CCAAAATCCCTGC-------------------------------------
i colAng1.NW_012115566v1   N 0 C 0
s calJac3.chr4             30199215 22 + 171630274 --------GCGCCTTTA-------------------------CCCAGTTTCATGT-------------------------------------
i calJac3.chr4             C 0 I 19
s saiBol1.JH378341            14747 22 +    515838 --------GCCCCTTTA-------------------------CCCGGTTTCCTTT-------------------------------------
i saiBol1.JH378341         I 1 I 23
s cebCap1.NW_016107755v1     394772 22 -   1771730 --------CCGCCTTTA-------------------------CCCGGTTTCATTT-------------------------------------
i cebCap1.NW_016107755v1   C 0 I 23
s aotNan1.NW_018496904v1     149341 22 -    383796 --------GACCCTTTA-------------------------CCCGGTTTCGTTT-------------------------------------
i aotNan1.NW_018496904v1   I 1 I 23
s otoGar3.GL873550         16987098 46 -  18854210 --------GGGACTCTAGCCCGGTTTCGTTTTCAGTTTAGGACAAAATCCCCTG--------------------------------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              984251 67 +  72498081 GGACTTGCGGACAGTTT-------------------------CCGAGGTCTCTGACCACTCGCCGGCCGTAGGTCCAATGCCAGGGGAGTCT
i canFam3.chr12            C 0 C 0
e cerAty1.NW_012002711v1     743236 509 +    766320 M
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=25056.000000
s hg38.chr6_GL000254v2_alt  1090953 11 +   4827813 GGGTGGGTCCG
s panTro5.chr6             30056591 11 + 175400573 GGGTGGGTCCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30287236 11 + 173848474 GGGTGGGTCCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6095651 11 +   6154872 GGGTGGGTCCG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30390350 11 + 172585720 GGGTTGGTCCG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     162614 11 +   1495729 AGGTTGCTAGG
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29226042 11 -  71996105 GGGTTGGTCCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      29839 11 +    273075 GGGTTAGTCCG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2950902 11 -   3067355 GGGTTGGTCCG
i colAng1.NW_012115566v1   C 0 I 29
s saiBol1.JH378341            14792  6 +    515838 AGGTTG-----
i saiBol1.JH378341         I 23 C 0
s cebCap1.NW_016107755v1     394817  6 -   1771730 gggttg-----
i cebCap1.NW_016107755v1   I 23 C 0
s aotNan1.NW_018496904v1     149386  6 -    383796 AGGTTg-----
i aotNan1.NW_018496904v1   I 23 C 0
s otoGar3.GL873550         16987144  8 -  18854210 -GGGTGGTC--
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              984318 11 +  72498081 AGGTGGACCGG
i canFam3.chr12            C 0 C 0
e calJac3.chr4             30199237 19 + 171630274 I
e cerAty1.NW_012002711v1     743236 509 +    766320 M
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=10290.000000
s hg38.chr6_GL000254v2_alt  1090964 7 +   4827813 ---GGCGAGG
s panTro5.chr6             30056602 7 + 175400573 ---GGCGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30287247 7 + 173848474 ---GGCGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6095662 7 +   6154872 ---GGCGAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30390361 7 + 172585720 ---GGAGGGG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     162625 7 +   1495729 ---ggcctgg
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29226053 7 -  71996105 ---GGAGGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      29850 7 +    273075 ---GGAGGGG
i manLeu1.NW_012101121v1   C 0 C 0
s saiBol1.JH378341            14798 7 +    515838 ---GGTGGGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     394823 7 -   1771730 ---ggcgggg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     149392 7 -    383796 ---ggcaggg
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16987152 3 -  18854210 ------GAG-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              984329 7 +  72498081 GCTGACG---
i canFam3.chr12            C 0 C 0
e calJac3.chr4             30199237 19 + 171630274 I
e colAng1.NW_012115566v1    2950913 29 -   3067355 I
e cerAty1.NW_012002711v1     743236 509 +    766320 M
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=53431.000000
s hg38.chr6_GL000254v2_alt  1090971 11 +   4827813 GCGAGGCTCGG
s panTro5.chr6             30056609 11 + 175400573 GCGAGGCTCGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30287254 11 + 173848474 GCGAGGCTCGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6095669 11 +   6154872 GCGAGGCTCGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30390368 11 + 172585720 GCGAGGCTTGG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     162632 11 +   1495729 ccggggctggg
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29226060 11 -  71996105 GCGAGGTTTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      29857 11 +    273075 GCGAGGCTCGG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2950942 11 -   3067355 GCGAGGCTCGG
i colAng1.NW_012115566v1   I 29 C 0
s saiBol1.JH378341            14805  9 +    515838 GCGGGGCGG--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     394830 11 -   1771730 gcggggctcgc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     149399 11 -    383796 gcggggcttgg
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16987155 10 -  18854210 GCGGGGCTGG-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              984336 11 +  72498081 GCGGGGACCGG
i canFam3.chr12            C 0 C 0
e calJac3.chr4             30199237 19 + 171630274 I
e cerAty1.NW_012002711v1     743236 509 +    766320 M
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1379765.000000
s hg38.chr6_GL000254v2_alt  1090982 189 +   4827813 ------TGGGCGGGGCTGACCGA---GGGGGTGGGG--------C-----CAGGTTCTCACACCCTCCAGTGGATGATTGGCTGCGACCTGGGGTCCGACGGACGCCTCCTCCGCGGGTATGAACAGTATGCCTACGATGGCAAGGATTACCTCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCAGCGGACACTGCGGCTCAGATCTCC
s panTro5.chr6             30056620 189 + 175400573 ------TGGGCGGGGCTGACCGA---GGGGGTGGGG--------C-----CAGGTTCTCACACCCTCCAGTGGATGATTGGCTGCGACCTGGGGTCCGACGGACGCCTCCTCCGCGGGTATGAACAGTATGCCTACGATGGCAAGGATTACCTCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCAGCGGACACTGCGGCTCAGATCTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30287265 189 + 173848474 ------TGGGCGGGGCTGACCGA---GGGGGTGGGG--------C-----CAGGTTCTCACACCCTCCAGTGGATGATTGGCTGCGACCTGGGGTCCGACGGACGCCTCCTCCGCGGGTATGAACAGTATGCCTACGATGGCAAGGATTACCTCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCAGCGGACACTGCGGCTCAGATCTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6095680 189 +   6154872 ------TGGGCGGGGCTGACCGA---GGGGGTGGGG--------C-----CAGGTTCTCACACCCTCCAGTGGATGATTGGCTGCGACCTGGGGTCCGACGGACGCCTCCTCCGCGGGTATGAACAGTATGCCTACGATGGCAAGGATTACCTCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCAGCGGACACTGCGGCTCAGATCTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30390379 189 + 172585720 ------TGGGCGGGGCTGACCGA---GGGGGCGGGG--------C-----CAGGGTCTCACACCCTCCAGTGGATGATTGGTTGCGACCTGGGGCCCCACGGGCGCCTCCTCCGCAGGTGTGAACAGTTCGCCTAAGATGGCAAGGATTACCTCGCCCTGAACGAGGACCTGTGCTCCTGAACCGCAGCGGACACTGTGGCTCAGATCTCC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     162643 181 +   1495729 ------tgggcggggctgACCGC---GGGAACTGGG--------C-----CAGGGTCTCACACCCTCCAGGTAATGTTTGGCTGCGACGTGGGGCCCGACGGATGCCTCCTCTGCTGGTATGAACAGTATGCCTACGACGGCAAGGATTATATCGCCCTGAACGAGGACCTGAGCTCCTGGAC--------ACGCAGCGGCTCAGACCATC
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29226071 189 -  71996105 ------TGGGCGGGGCTGACCGA---GGGGGCGGGG--------C-----CAGGGTCTCACACCCTCCAGTGGATGATTGGTTGCGACCTGGGGCCCGACGGGCGCCTCCTCCGCAGGTGTGAACAGTTCGCCTATGATGGCAAGGATTACCTCGCCCTGAACGAGGACTTGTGCTCCTGAACCGCAGCGGACACTGTGGCTCAGATCTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      29868 189 +    273075 ------TGGGCGGGGCTGACCGA---GGGGGCGGGG--------C-----CAGGGTCTCACACCCTCCAGTGGATGATTGTTTGCGACCTGGGGCCCAACGGGCGCCTCCTCCGCAGGTGTGAACAGTTCGCCTACGATGGCAAGGATTACCTCGCCCTGAACGAGGACCTGTGCTCCTGAACCGCAGCGGACACTGTGGCTCAGATCTCC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2950953 189 -   3067355 ------TGGGCGGGGCTGACTGA---GGGGACGGGG--------C-----CAGGGTCTCACACCCTCCAGTGGATGATTGGTTGCGACCTGGGGCCGGACGGGTGCCTCCTCTGCAGGTGTTAACAGTTCGCCTACGATGGCAAGGATTACCTCGCCCTGAACGAGGACCTGTGCTCCTGAACCGCAGCGGACACTGTGGCTCAGATCTCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30199256 189 + 171630274 ------TGGGCGGGGCTGACCGC---AACGGCGGGG--------C-----CAGGGTCTCACACCCTCCAGGTGTTGTTTGGCTGCGACCTGGGGCCAGATGGGCGCCTACTCCGCGGATACTGCCGCATAGCCTACGACGGCAAGGATCACGTCGCCCTGAACGAGGACCTGCGCTCCTGGACAGCCGCGGACACGGCAGCTCAGGTCACC
i calJac3.chr4             I 19 C 0
s saiBol1.JH378341            14814 188 +    515838 ------TGTGC-AGGTTGACCGC---GGGGGCGGGG--------C-----CGGGGTCCCACACCCTCCAGGAGATGTGTGACTGCGTCCTGGGGTCCGAAGGGCGCCTTCTCCAAGGGTATCACCAGTTCGCCTAAGACGGCAAAGATTACCTCGCCCTGAACGAGGACCTGCGCTCCTGGACCCCCGCGGACCTGGCGGCTCAGATCTCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     394841 188 -   1771730 ------tgggcggagctga-cgc---aggggcgggg--------c-----CAGGGTCTCACACCTTCCAGAGGATGTATGGCTGCGACCTGGGGCCGGACGGGCGCCTCCTCCGCGGGTATCACCAGCACGCCTACGACGGCAAGGACTACATCGCCCTGAACGAGGACATGCGCTCCTGGACCGCCGCGGACACGGCGGCTCAGATCACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     149410 192 -    383796 ------tgggc-gggatgaccgc---gggggcgggg--------cggggGTGGGGTCCCACACCCTCCAGGAGATGTATTCCTGCGACCT-GGGCCCGAAGGGCGCCTTCTCCGCGGGTATCACCAGTTCGCCTACGACTGCAAGGATTACCTCGCCCTGAACTAGGACCTGCGCTCCTCGACCACCGCAGACCTGGCGGCTCAGATCACC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16987165 188 -  18854210 ------TGGACGCGGCTGACCGC---AGGGTCGGGG--------C-----CAGGGTCACACACCTTCCAGAGGATGTCCGGCTGCGACATGGGGCCGGACAGGCGCCTCCTCGGCGGGTAAGAGCAGTTCGCCTACTACCGCGCAGACTACATCGCCCTGAACTAGGACCTGCGCTCCTGGACAGCGGCGGACAC-GCGGCTCAGATCACC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              984347 206 +  72498081 GCTACCGGGGCGGGACTGACTGAGACGGGGGCGGGGGGGGTTGCC-----CAGGGTCTCACACCTTCCAGTGGACTTCGGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGTATGAGCAGTTCGCGTACGACGGCGCCGATTACCTGGCCCTGGACGAGGACCTGCGCTCCTGGACCGCGGCGGACGCGGCGGCGCAGATCACC
i canFam3.chr12            C 0 C 0
e cerAty1.NW_012002711v1     743236 509 +    766320 M
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=8366679.000000
s hg38.chr6_GL000254v2_alt  1091171 1044 +   4827813 AAGCGCAAGTGTGAGGCGGCCAATGTGGCTGAACAAAGGAGAGCCTACCTGGAGGGCACGTGCGTGGAGTGGCTCCACAGATACCTGGAGAACGGGAAGGAGATGCTGCAGCGCGCGGGTACCAGGGGCAGTGGGGCGCCTCCCTGATCTCCT------------GTAGACCTCTCAGCCTGGCCTAGCACAAGGAGAGGAGGAAAATGGGACCAACACTAGAATAT--------CGCCC--------TCCCTCTGGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTACCAGAGAGTGA----TTCTGAGGGCCCGTCCTGCTCTCTGGGACAATTAAGGGATGAAGTCTCTGAGGGAGTGGAGGGGAAGACA-ATCCCTGGAAG-ACTGATCAGGGGTTC------CCTTTGACCCC-ACAGCAGCCTT-GGCACCA-----GGACTTTTCCCCTCAGGCCTTGTTCTCTGCCTCACACTCAATGTGTGTGGGGGTCTGACTCCAGCTCCTCTGAGTCCCTTGG---CCTCCACTCAGGTCAGAACCGGAGGTCCCTGCTCCCCC----------GCTCAGAGA-------------------------------------CTAGAACTTTCCAAGGAATAGGAGATTATCCCAGGTGCCCGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCCCC-----------------ACCCCAGGTATCTGGTTCATTCTTAGGATGGTCACATCCAGGTGCTGCTGGAGTGTCCCATGAGA---GATGCAAAGTGCTTGAATTTTCTGACTCTTCCTTTCAGA-CCCCCCCAAGACACACGTGACCCACCACCCTGTCTTTGACTATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCATACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACGTGGAGCTCGTGGAGACCAGGCCTGCAGGGG---ATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCC-ATGTGCAGCATGAGGGGCTGCCGGAGCCCCTCATGCTGAGATGGAGTAAGGAG----------GGAGATGGAGGC-------ATCATGTC---T-GTTAGGGAAAGCAGGAGCCTCT
s panTro5.chr6             30056809 1044 + 175400573 AAGCGCAAGTGTGAGGCGGCCAATGCGGCTGAACAAAGGAGAGCCTACCTGGAGGGCACGTGCGTGGAGTGGCTCCACAGATACCTGGAGAACGGGAAGGAGATGCTGCAGCGCGCGGGTACCAGGGGCAGTGGGGCGCCTCCCTGATCTCCT------------GTAGACCTCCCAGCCTGGCCTAGCACAAGGAGAGGAGGAAAATGGGACCAACACTAGAATAT--------CGCCC--------TCCCTCTGGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTACCAGAGAGTGA----TTCTGAGGGCCCGTCCTGCTCTCTGGGACAATTAAGGGATGAAGTCTCTGAGGGAGTGGAGTGGAAGACA-ATTCCTGGAAG-ACTGATCAGGGGTTC------CCTTTGACCCC-ACAGCAGCCTT-GGCACCA-----GGACTTTTCCCCTCAGGCCTTGTTCTCTGCCTCACACTCAATGTGTGTGGGGGTCTGACTCCAGCTCCTCTGAGTCCCTTGG---CCTCCACTCAGGTCAGAACCGGAGGTCCCTGCTCCCAC----------GCTCAGAGA-------------------------------------CTAGAACTTTCCAAGGAATAGGAGATTATCCCAGGTGCCCGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCCCC-----------------ACCCCAGGTATCTGGTTCATTCTTAGGATGGTCACATCCAGGTGCTGCTGGAGTGTCCCATGAGA---GATGCAAAGTGCTTGAGTTTTCTGACTCTTCCTTTCAGA-CCCCCCCAAGACACACGTGACCCACCACCCTGTCTTTGACTATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCATACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACGTGGAGCTCGTGGAGACCAGGCCTGCAGGGG---ATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCC-ATGTGCAGCATGAGGGGCTGCCGGAGCCCCTCATGCTGAGATGGAGTAAGGAG----------GGAGATGGAGGC-------ATCATGTC---T-GTTAGGGAAAGCAGGAGCCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30287454 1044 + 173848474 AAGCGCAAGTGTGAGGCGGCCAATGCGGCTGAACAAAGGAGAGCCTACCTGGAGGGCACGTGCGTGGAGTGGCTCCACAGATACCTGGAGAACGGGAAGGAGATGCTGCAGCGCGCGGGTACCAGGGGCAGTGGGGCGCCTCCCTGATCTCCT------------GTAGACCTCCCAGCCTGGCCTAGCACAAGGAGAGGAGGAAAATGGGACCAACACTAGAATAT--------CGCCC--------TCCCTCTGGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTACCAGAGAGTGA----TTCTAAGGGCCCGTCCTGCTCTCTGGGACAATTAAGGGATGAAGTCTCTGAGGGAGTGGAGTGGAAGACA-ATTCCTGGAAG-ACTGATCAGGGGTTC------CCTTTGACCCC-ACAGCAGCCTT-GGCACCA-----GGACTTTTCCCCTCAGGCCTTGTTCTCTGCCTCACACTCAATGTGTGTGGGGGTCTGACTCCAGCTCCTCTGAGTCCCTTGG---CCTCCACTCAGGTCAGAACCGGAGGTCCCTGCTCCCAC----------GCTCAGAGA-------------------------------------CTAGAACTTTCCAAGGAATAGGAGATTATCCCAGGTGCCCGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCCCC-----------------ACCCCAGGTATCTGGTTCATTCTTAGGATGGTCACATCCAGGTGCTGCTGGAGTGTCCCATGAGA---GATGCAAAGTGCTTGAGTTTTCTGACTCTTCCTTTCAGA-CCCCCCCAAGACACACGTGACCCACCACCCTGTCTTTGACTATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCATACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACGTGGAGCTCGTGGAGACCAGGCCTGCAGGGG---ATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCC-ATGTGCAGCATGAGGGGCTGCCGGAGCCCCTCATGCTGAGATGGAGTAAGGAG----------GGAGATGGAGGC-------ATCATGTC---T-GTTAGGGAAAGCAGGAGCCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6095869 1043 +   6154872 AAGCGCAAGTGTGAGGCGGCCAATGTGGCTGAACAAAGGAGAGCCTACCTGGAGGGCACGTGCGTGGAGTGGCTCCACAGATACCTGGAGAACGGGAAGGAGATGCTGCAGCGCGCGGGTACCAGGGGCAGTGGGGCGCCTCCCTGATCTCCT------------GTAGACCTCCCAGCCTGGCCTAGCACAAGGAGAGGAGGAAAATGGGACCAACACTAGAATAT--------CGCCC--------TCCCTCTGGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTACCAGAGAGTGA----TTCTGAGGGCCCGTCCTGCTCTCTGGGACAATTAAGGGATGAAGTCTCTGAGGGAGTGGAGGGGAAGACA-ATCCCTGGAAG-ACTGATCAGGGGTTC------CCTTTGACCCC-ACAGCAGCCTT-GGCACCA-----GGACTTTTCCCCTCAGGCCTTGTTCTCTGCCTCACACTCAATGTGTGTGGGGGTCTGACTCCAGCTCCTCTGAGTCCCTTGG---CCTCCACTCAGGTCAGAACCAAAGGTCCCTGCTCCCCC----------GCTCAGAGA-------------------------------------CTAGAACTTTCCAAGGAATAGGAGATTATCCCAGGTGCCCGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCCCC-----------------ACCCCAGGTATCTGGTTCATTCTTAGGATGGTCACATCCAGGTGCTGCTGGAGTGTCCCATGAGA---GATGCAAAGTGCTTGAGTTTTCTGACTCTTCCTTTCAGA--CCCCCCAAGACACACGTGACCCACAACCCTGTCTTTGACTATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCATACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACGTGGAGCTCGTGGAGACCAGGCCTGCAGGGG---ATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCC-ATGTGCAGCATGAGGGGCTGCCGGAGCCCCTCATGCTGAGATGGAGTAAGGAG----------GGAGATGGAGGC-------ATCATGTC---T-GTTAGGGAAAGCAGGAGCCTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30390568 1053 + 172585720 AAGCACAAGTGTGAGGCGGCCAAAGCCACTGAACGAAGGAGAGCCTACCTGGAGGGCACGTGAGTGGAGTGGCTCCACAGATACCTGGAGAATGGGAAGGAGATGCTGCAGCGTGCGGGTACCAGGGGCCCTGGGGCGCCTCCCCGATCTCCT------------GTAGACCTCCCAGGCTGGCCTAGCACAAGGAGAGGAGGAAAATGGGAGCAACACTAGAATAG--------CGCCC--------TCCCTCTGGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTACCAGAGAGTGA----CTCTGAGGGCTCGCCCTGCTCTCTGGGACAATTAAGGGATGAAGTCTCTGAGGGAGTGGAGGGGAAGACA-ATCCCTGGAAT-ACCGATCAGGAGTTT------CCTTTGACCCC-ACAGCAGTCTTAGGCACCA-----GGACTTTTCCCCTCAGGCCTTGCTCTCTGCCTCACACTCAATGTGTGTGGGGGTCTGACTCCAGCTCCTCTGAGTCCTTTGG---CCTTCACTCAGGTCAGAATCGGAAGTCCCTGGTCCCCC----------GCTGAGAGA-------------------------------------TTAGAACTTTCCAAGGATTAGGAGATTATCCCAGGTGCCCGTGTCCAGGCTGGTGTCTGAGTTCTGTGCTCCTTCCCC---------CCTCCCCCCCCTCCAGGTATCTGGTTCATTCTTAGGACGGTCACATACTGGTGCTGCTGGAGTGTCCCACGAGA---GATGCAAAGTGCCTGAGTTTTCGGACTCTTCCTTTCAGA-CCCCCCTAATTCACACGTGACCCACCATCCTGTCTTTGACTATGAGGCCACCCTGAGGTGCTGAGCCCTGGGCTTCTACCCTGCGGAGATCAGACTGACCTGGCAGCGGGAGAGTGAGGACCAGACCCACGACGTGGAGCTCGTGGGGACCAGGCCTGCAGGGG---ATAGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATTCACGTGCT-ATGTGCAGCACCAGGGGCTGCCTGAGCCCCTCATGCTCAGATGGAGTAAGGAG----------GGAGATGGAGGT-------ATCATGTC---T-CTTAGGGAAAGCAGGAGCCCCT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     162824 1040 +   1495729 CTGCGCAAGTGGGAGGCGGCCAATGTGGCTGAGCAAAGGAGAGCCTATCTGGAGGGCAACTGCGTAGAGTGGCTCCGCAGACACCTGTAAAAGGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCATGGGGTGCCTCCTAGATCTCCT------------GTAGATCTCCTGGGCTGGCCTCGCACAAGGAGGGGAAGAAAATGGCAACACCACCGGAATAT--------CGCCC--------TCCCTCTGGTCCCGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTACCAGAGAGTGA----CTCTGAGGGCCCGCCCTGCTCTCTGGGACAGTCAAGGGATGAAGTCTCTGAGGGAGTGGA-GGGAAGACA-ATCCCTGGAAT-ACTGATCAGGGGTTC------CCTTTGACCCC-ACAGCAGCCTTGGGCACCA-----GGACTTTTCCCCTCAGGCCTTGTTCTCTGCCTCACACTCAATGTGTGTGGGGGTCTGACTCCAGCTCCTCTGAATCCCTTGG---CCTCCACTCAGGTCAGGACCAGAAGTCCCTGCTCCCCT----------GCTCACAGA-------------------------------------CTAGAACTTTCCAAGGAAT---AGATTATCCCAGGTGCCTGTGTCCAGGCTAGTGTCTGGCTTCTGTGCTCCCT-----------------TCCTGACCCCAGGTGTCCTGTCCATTCTCAAGATGGCCACATG--AATGCTGCTGGGGTTTCCCATGAGA---GATGCAAAGTGCCTGAGTTTTCTGACTCTTCCTTTCAGAGCCCCCACAAGACACATGTGACCCACCACCCTGTCTCTGAACACGAGGCCACCCTAAGGTGCTGGGCCCTGGGCTTGTATCCTGCGGAGATCACACTGACCTGGCAGTGGGATGGGGAGGACCAGACCCAGGACATGGAGCTCGGGGAGACCAGGCCCGCAGGGG---ATGGAACCTTCCAGAAGTGGGTGGCTGTGGTGGTGCCTTCTGCAGAGGAGCAGAGATTCACATGCC-ATGTGCAGCATGAGGGTCTGCCCAAGCCCCTCACCCTGAGATGGGGTAAGTAG----------GGAGATGGGGGG-------ATCATGTC---T-CTTAGGGAAAGCAGGAGCCCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     743745 1061 +    766320 AAGCGCAAGTGTGAGGCGGCCAAAGCGACTGAAGGAAGGAGAGCCTACCTGGAGGGCACGTGAGTGGAGTGGCTCCACAGATACCTGGAGAATGGGAAGGAGATGCTGCAGCGTGCGGGTACCAGGGGCCATGGGGCGCCTCCCCGATCTCCT------------GTAGACCTCCCAGGCTGGCTTAGCACAAGGAGAGGAGGAAAATGGGAGCAACACTAGAATA---------CGCCC--------TCCCTCTGGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTACCAGAGAGTGA----CTCTGAGGGCGCGCCCTGCTCTCTGGGACAATTAAGGGATGAAGTCTCTGAGGGAGTGGAGGGGAAGACA-ATCCCTGGAAT-ACCGATCAGGAGTTC------CCTTTGACCCC-ACTGCAGTCTTAGGCACCA-----GGACTTTTCCCCTCAGGCCTTGTTCTCTGCCTCACACTAAATGTCTTTGGGGGTCTGACTCCAGCTCCTCTGAGTCCTTTGG---CCTTCTCTCAGGTCAGAATCGGAAGTCCCTGCTCCCCC----------GCTGAGAGA-------------------------------------TTAGAACTTTCCAAGGATGAGGAGATTATCCCAGGTGCCCGTGTCCAGGCTGGTGTCTGAGTTATGTGCTCCCTCCCCCCACCCCCACCACCCCCCTCGCCAGGAATCTGGTTCATTCTTAAGACGGTCACATACTGGTGCTGCTGGAGTGTCCCACGAGA---GATGCAAAGTGCCTGAGTTTTCGGGCTCTTCCTTTCAGA-CCCCCCCAATTCACACGTGACCAACCATCCTGTCTTTGACTATGAGGCTACCCTGAGGTGCTGAGCCCTGGGCTTCTACCCTGCGGAGATCAGACTGACCTGGCAGCGGGAGAGGGAGGACCAGACCCACGACGTGGAGCTCGTGGGGACCAGGCCTGCAGGGG---ATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATTCACGTGCT-ATGTGCAGCACCAGGGGCTGCCTGAGCCCCTCATGCTGAGATGGAGTAAGGAG----------GGAGATGGAGGT-------ATCATGTC---T-ATCAGGGAAAGCAGGAGCCCCT
i cerAty1.NW_012002711v1   M 509 C 0
s chlSab2.chr17            29226260 1054 -  71996105 AAGCGCAAGTGTGAGGCGGCCAAAGTGACTGAACGAAGGAGAGCTTACCTGGAGGGCACGTGAGTGGAGTGGCTCCACAGATATCTGGAGAATGGGAAGGAGACGCTGCAGCGTGCGGGTACCAGGGGCCATGAGGCACCTCCCCGATCTCCT------------GTAGACCTCCCAGGCTGGCCTAGCACAAGGAGAGGAGGAAAATGGGAGCAACACTAGAATAG--------CGCCC--------TCCCTCTGGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTACCGGAGAGTGA----TTCTGAGGGCCCGCCCTGCTCTCTGGGACAGTCAAGGGATGAAGTCTCTGAGGGAGTGGAGGGGAAGACA-ATCCCTGGAAT-ACTGATCAGGAGTTC------CCTTTGACCCC-ACAGCAGTCTTAGGCACCA-----GGACTTTTCCCCTCAGGCCTTGCTCTCTGCCTCACACTAAATGTGTGTGGGAGTCTGACTCCAGCTCCTCTGAGCCCTTTGG---CCTTCACTCAGGTCAGAATCGGAAGTCCCTGCTCCCCC----------GCTCTGAGA-------------------------------------TTAGAACTTTCCAAGGATTAGGAGATTATCCCAGGTGCCCGTGTCCAGGCTGGTGTCTGAGTTCTGTGCTCCCTCCCCC--------CCCACCCCCGCGCCAGGTATCTGGTTCATTCTTAGGACGGTCACATACTGGTGCTGCTTGAGTGTCCCATGAGA---GATGCAAAGTGCCTGAGTTTTCGGACTCTTCCTTTCAGA-CCCCCCCAATTCGCACGTGACCCACCATCCTGTCTTTGACTATGAGGCCACCCTGAGGTGCTGAGCCCTGGGCTTCTACCCTGCGGAGATCAGACTGACCTGGCAGCGGGAGAGTGAGGACTAGACCCACGACGTGGAGTTCGTGGGGACCAGGCCTGCAGGGG---ATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATTCACGTGCT-ATGTGCAGCACCAGGGGCTGCCTGAGCCCCTCATGCTGAGATGGAGTAAGGAG----------GGAGATGGAGGT-------ATCATGTC---T-CTTAGGGAAAGCAGGAGCCCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      30057 1048 +    273075 AAGCACAAGTGTGAGGCGGCCAAAGCGACTGAAGGAAGGAGAGCCTACCTAGAGGCCACGTGAGTGGAGTGGCTCCACAGATACCTGGAGAATGGGAAGGAGATGCTGCATCGTGCGGGTACCAGGGGCCATGGGGCGCCTCCCTGATCTCCT------------GTAGACCTCCCAGGCTGGCCTAGCACAAGGAGAGGAGGAAAATGGGAGCAACACTAGAATAG--------CGCCC--------TCCCTCTGGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTACCAGAGAGTGA----CTCTGAGGGCCCGCCCTGCTCTCTGGGACAATTAAGGGATGAAGTCTCTGAGGGAGTGGAGGGGAAGACA-ATCCCTGGAAT-ACTGATCAGGAGTTC------CCTTTGACCCC-ACAGCAGTCTTAGGCACCA-----GGACTTTTCCCCTCAGGCCTTGTTCTCTGCCTCACACTCAATGTGTGTGGGGGTCTGACTCCAGCTCCTCTGAGTCCTTTGG---CCTTCACTCAGGTCAGAATCGGAAGTCCCTGCTCCCCC----------GCTGAGAGA-------------------------------------TTAGAACTTTCCAAGGATTAGGAGATTATCCCAGGTGCCCGTGTCCA----GGTGTCTGAGTTCTGTGCTCCCTCCCCC--------CACCCCACCCCGCCAGGTATCTGGTTCATTCTTAGGACGGTCATATACTGGTGCTGCTGGAGTGTCCCACGAGA---GATGCAAAGTGCCTG-GTTTTCGGACTCTTCCTTTCAGA-CCCCCCCAATTCACACGTGACCCACCATCCTGTCTTTGACTATGAGGCCACCCTGAGGTGC-GAGCCCTGGGCTTCTACCCTGTGGAGATCAGACTGACCTGGCAGCGGGAGAGTGAGGACCAGACCCATGACGTGGAGCTCGTGGGGACCAGGCCTGCAGGGG---ATGGGACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATTCATGTGCT-ATGTGCAGCACCAGGGGCTGCCTGAGCCCCTCATGCTGAGATGGAGTAAGGAG----------GGAGATGGAGGT-------ATCACGTC---T-GGTAGGGAAAGCAGGAGCCCCT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2951142 1053 -   3067355 AAGCACAAGTGTGAGGCGGCCAAAGTGACTGAACGAAGGAGAGCCTACCTGAAGGGCACGGGCGTGGAGTGGCTCCACAGATACCTGGAGAATGGGAAGGAGATGCTGCAGCGTGCGGGTACCCGGGGCCATGGGGCGCTTCCCTGATCTCCT------------GTAGACCTCCCAGGCTGGACTAGCACGAGGAAAGGAGGAAAATGGGACCAACACTAGAATAG--------CGCCC--------TCCCTCTAGTCCTGAGGGAGAGGAATTCTCCTGGGTTTCCAGATCCTGTACCAGAGAGTGA----TTCTGAGGGCTGGTCCTGCTCTCTGGGACAATTAAGGGATGAAGTCTCTGAGGGAGTAGAGGGGAAGACA-ATCCCTGGAAT-ACTGATCAGGGGTTC------CCTTTGACCCC-ACAGCAGCCTTAGGCACCA-----GGACTTTTCCCCTCAGGCCTTGTTCTCTGCCTCACACTCAATGTGTGTGGGAGTCTGACTCCAGCTCCTCTGAGTCCTCTGG---CCTTCACTCAGGTCAGAATCGGAAGTCCCTGTTCCCCT----------GCTTAGAGA-------------------------------------CTAGAACTTTCCAAGGATTAGGAGATTATCCCAGGTGCCCGTGTCCAGCCTGGTGTCTGGGTTCTGTGCTCCCTTCCCC--------CCTCGTCCCCCGCCAGGTATCTGGTTCATTCTTAGGATGGTCACATACTGGTGCTGCTGGAGTGTCCCATGAGA---GATGCAAAGTGCCTGAGTTTTCGGACTCTTCCTTTCAGA-CCCCCCCAATTCACATGTGACCCACTATCCTGTCTTTGACTATGAGGCCACCCTAAGGTGCTGGGCCCTGAGCTTCTACCCTGTGGAGATCAGACTGACCTGGCAGCAGGACAGGGAGGACCAGACCCACGATGTGGAGTTCGTGGAGACCAGGCCTGCAGGGG---ATGGAAACTTCCAGAAGTGGGCAGCTGTGGTGATGCCTTCTGGAGAGGAGCAGAGATTCACGTGCT-ATGTGCAGCACCAGGGGCTGCCTGA-CCCCTCATGCTGAGATGGAGTAAGGAG----------GGAGATGGAGGT-------ATCATGTC---T-CTTAGGGAAAGTGGGAGCCCCT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30199445 1043 + 171630274 CAGCGCAAGTTGGAGGCTGAGAAATATGCAGAGCGGTTGAGGGCACAGCTGGAGGGGGAGTGCGTGGGGATGCTCAAAAGATTCTTGGAGAACGGGAAAGAGACGCTGGAGCGCGCAGGTACCAGGGGCAGTGGGAAGCCGTCCCCATCTCCT------------ATAGATCTCTCGGGATGGCCTCCCACGAGGAGGGGA-GGAAATGGGATCCGCGCTAGAATAT--------CGCCC--------TCCCTTGAAT--GGAGAATGGCGGGTTTTCCTGAGTTTC--------------------------CTCTGAGGGCCC-CTCTGCTCTCTAGGACAATTAAGGGATGACGTCTCTGAGGAAATGGAGGGGAAGATG-GTCCCTGGAAT-ACTGATCAGGGGTCC------CCTTTGGCCCCTGCAGCCGCCTTGGGCGCCG-----TGAC-TTTTCTCTCAGGCCTTGTTCTCTGCTTCACACTCAATGTGTCTGAAGGTCAGATTCCAGCTTTTCTCAGTCCCTCAG---CCTCCAGTCAGGTCAGGACCAGAAATCCCTGTTCTTACAGAGACTAGAACTCAGAGA-------------------------------------CTAGAACTTTTCAAAGAATAG---ATTACCGCAGGTGCCTGTGTCCAGGCTGGTGTCTGAGTTCTGTGCTCCCTTCCCC-----------------ACCTCAGGTGTCCTCTCCATTCTCAGGATGGTCCCATG--GATGATGCTGGGGTGTCCCATGAGA---GATGCAAATTGCCTAAATTTTCTGATTCTTCCCATCAGA-ACCCCCAAAGACACGTGTGACCCACCACCCCATCAATGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAAACTCAGGACACAGAGCTTGTGGAGACCAGGCCAGCAGGGG---ATGGGACCTTCCAGAAGTGGGCGGCTATGGTGGTGCCTTCTGGAGAAGAGCAGAGATACACATGCC-ATGTGCAGCACGAGGGGCTGCCAGAGCCCCTCACCCTGAGATGGGGTAAGGAAGGGGATAGGTAGGGATG-GAATTGGGGGGGTCACATCTCTT-CTCAGGGAAAGCAGGAGCCCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341            15002 1018 +    515838 CAGCCCAAGTGGGAGGTGGACAATGTGGCGGAGAAGATGAGCGCCTACCTGGAGGGCAGGTGCCTGGAGTGGCTCCGCAGACACCTGGAGAAAGGGAAGGAGACACTGGAGCGCG--AGTACCAGAGGCCAGAGGGAACCTCCCTGATCTCCT------------CTAGACCTCCCAGGCTGGCCTCTCACAAGTAGAGGAGGGAAATGGGACCAACACTCGAATAT--------CGCCC--------TCCCTCGGGT------CCTCAGGAATCCTCCTGAGTTTCCAGATCCTGTGCCAGAGAATGA----CTCTGAGGGACCGCCCTGCTCTCTGATACAATTAAGGGATGAAATCTCTGAGGGAGTGGAGGTAAAGACA-ATCCCTGGAAT-ACTGATCAGGGGTTC------CCTGTGACCCC-ACAGCAGTCTTGGGCACCA-----AGCCATTTCCTCTCGGGCCTGGTTCTCTGCTTCACACTCAATGTGTGTGGGGGTCTGACTCCAGCTCCTCTGAGTCCCTTGG---CCTTCACTCAGGACAGGACCAGCAGTCCTTCCTCCTCC----------GCTCGGAAA-------------------------------------CTAGAACTTTCCAAGGAACAGGACATTATCCCAGGTGCCTGTGTCCAAGCTGGTGTCTGGGTTCTGCACTTCCTTCCCC-----------------ACCCCGGGTGTCCTGTCTATTCTCAGGATGGTCACATG--GGTGCTGTAGCGGTGTCCCATGAGA---GATGCAAGATGTCTGAATTTTCTGACTCTTCCCTTCAGT-GCCCCCCAAGACACA--------------CCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGATTCTACCCTGCGGAGATCACACTGACCTGGCAGC-GAATGGGGAGGACCAGACCCAATACATGGAGATAGTAGAGACCAGGCCCACAGGGG---ATGGAAACTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGACATACACATGCC-ATGTGCAGCACAAGGGGCTGCACGAGCCCCTCACTCTGAAATGGGGTAAGGA-----------GGGGATG-GAAT-------GTCGTGTC---T-CTAAGAGAAGGCAGGAGCCCCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     395029 1041 -   1771730 CAGCGCAAGTGGGAGGCGGCCAATGTGGCGGAGCAAAAGAAAGCCTACCTGGAGGACGAGTGCCTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCAGGGGGAACCTCCCTGATCGCCT------------GTGGACCTCCCAGGCTGGCCTTGCAGAAGGAGGGGAGGAAAATGGGACGAACACTAGAATATCCCCCACCCCCCC--------GCCCCCGACC--TGAGGGAGAGGAA---TCCTGGGTTTCCAGATCCTGTA-CAGAGAGTGA----CACTGAGGGCCTGCCCTGTTCTCTGATACAATTAAGGGTTGCAGTCTCTGAGGGAAAGGAGGGGAAGTCA-ATCACAGGAAT-ACTGATCAGGGGTTC------CCTGTGACTCC-ACAGCAGCGTTGGGCACCA-----GGAT-TTTTCTCTCCTGCCTTGTCCTCTGCCTCACATTCAATATGCGTGGGGGTCTGACTCCAGCTCCTCTGAGTCCCTTGG---CCTCCACTCAGATCAGGGCCAGAAGTCCCAGTTCCCCC-----------CCTTGAGA-------------------------------------CTAGAACTTTCCAAGGAAAAGGGTATTATCTCAGGTGCCTGTGTCCAGGCTGGTGTCTGTGTTCTGTGCTCCCTTCCCT-----------------ATCCCTGGTGTCCTGTCCATTCTCAGGATGGTCACATA--GGAGCTGCTGGGGTGTCCCATGAGA---GATGCTAAGTGCCTGAATTTTCTGACTCTTTCCTGCAGA-GCACCCCAAGACACACGTGTCACATCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACAGAGCTGGTAGAGACCAGGCCCATGGGGG---ATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACATGCC-ATGTGCACCACGAGGGGCTGTCTGAGCCCCTCACCCTGAGATGGGGTAAGGA-----------GGGGATG-GGAC-------GTCATACC---T-TTTGGGGAAAGCAGGAGCCCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     149602 1032 -    383796 CAGCGCAAGTGGGAGGCGGACAATGTGGCGGAGAAGATGAGAGCCTACCTGGAAGGCAGGTGCCTGGAGTGGATCCGCAGACACCTGGAGAACAGGAATGAGACACTGGAGCGCGCGCGTACCAGGAGCAACGGGGCGCCTCCCTGATCTCCT------------GTAGACCTCCCAGGCTGGCCTCGCACAAGTAGGGGAGAAAAATGGGACCAGCACTCGAATAT--------CACCC--------TCCCTCTGGT------CCTCAGGAATCCTCTTGGGTTTCCAGATCCTGTGCCAGAGAATGA----CTCTGAGGGACTGCCCTGCTCTCTGATACAATTAAGGGATGAAGTCTCTGAGGGAGTGGAGGTGAAGACA-ATCCCTGGAAT-ACTGATCAGGGTTTC------CCTTTGACCCC-ACAGCAGCCTTGGGCACCA-----AGCCATTTCCTCTCGGGCCTGGTTCTCTGCTTCACACTCAATGTGTGTAGAAGTCTGACTCCAGCTCCTCTGAGTCCCCTGG---CCTCTACTCAGGACAGGACCAGCAGTCCCTCCTCCTCT----------GCTCAGAGA-------------------------------------CTAGAA-TTTCCAAGGAATAG---ATTATCCCAGGTGCCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCCC------------------ACACCAGGTGTCCTCTTCCTTCTCAGGATGCTCACATA--AGTGCTGCTGGAGTGTCCCATGAGG---AAAGCAAAGTGCCTGAATTTTCTGACT-TTTCCTTCAGA-TGCCCCCAAGACACATGTGACCCACCACCCCGTCTCTAACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGTGGAGATCACACTGACTTGGCAGGGAGATGGGGAGGACCAGAACCAGGACACGGAGCTTGTGGAGACCAGGCCCGCAGGGG---ACGGAAACTCCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAAGAGCAGAGATACACCAGCCAATCTGCAGACTGAGGGGCTGCCCGAGCCCCTCACCCTGAGATGGAGTAAGGAG----------GGAGATGAGGGT-------ATCATGTC---T-CTTAGGGAAAGCAGGAGCCTCT
i aotNan1.NW_018496904v1   C 0 I 22
s otoGar3.GL873550         16987353 1043 -  18854210 CAGCGCAAGTGGGAGGCGGAGGGTGCGGCGGAGGCAGACAGGGCCTACCTGGAGGGGGAATGCGCGGAGTGGCTCCGCAGATACCTGGAGAACGCAAAGGACA-----CCACGCACGGGTACGAGGGAT-GCGGGGCGCCTCCCACATCTCCT------------GTAGATCTCGCAGCTCCGGGTC-CACGAGGAGGTGAGGAAAATGGATTCGACGCTAGAATAT--------CGCCC--------TCCCTCTGGTCCAGAGCAGGAAGACGCCCCCTGAGTGTCCAGATCCTGTACCAGAGAGTGA----CTCTGCTGGCCTGTCCTTCCCTCCAGGACAGTTAAGGGATGAAGCGTCCCAGGGAACGGAGGGACTGACA-GTCACTGAAAT-ACTGGTCAGCAGTACtgggcaccttgggcact-ggggcagccttgggcacct-----tgAT-CTTTCTCTCAGGCCTTGTTCTTTGCCCCAC--TTGGTGTGTCTGGAGGTCTGATTCCAG-GCATCTGGGTCACTCTG---CCTCTGCTCAGCTCAGGACTGGAGGACTCTGTTCTTCT----------CCTCAGAGG-------------------------------------CTGGAACTTCCCAAAGATTAGGAAATAATCCCAGATCCCTGAATCCAGGCTGGTGTCTGGATTTTGCACTCTCTTTCCC-----------------ACCCCATTTGTCCTGTCCATTCTCAGGATA-TCACATC--AGCACTGCTGGAGTGTCCCATAAGG---GATGCAAAGTGCCTGAATTTTCTGACTCTTCCCCTCAGA-TCCCCCAAAGACTCGTGTGACCCACCACCCCACCTCTGACTGTGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTATCCTGCAGAGATCACACTGACCTGGCAGCAGGATGGGGAAGGCCAGACCCAGGACACAGAGCTTATAGAGA-CAGGCCTTCGGGGGACAACAGAACTTTCCAGAAGTGGTCTGCTGTGGTGGTGCTTCCTGGAGAGGAGCAGAGATACACCTACC-ATGTGCAGCATGAGGGGTTGTACAAGCCCCTAACCCTAAGATGGGGTAAGAAGT---------GGAGGTGAGAGT-------ATCACATCTCTT-CTCAGGGTAAGTAGGGGTCCTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              984553 1094 +  72498081 CGGCGCAAGTGGGAGGCGGCGGGCGCGGCCCAGTACTACCGGGTATACCTGCAGGGGGAGTGCGTGCAGTCGCTCCTTAAGTACCTGGAGAGAGGGAAAGAGACCCTGCAGCGCACAGGTCTGTGGGGCAGCTGGGA--CTCCGGGATCTCCCCTCCCGCTGGGGCTGTACCTCCT--GCTATCCCTACAAAA-------AGGAAAATGGAATTGACACCAGAATTC--------CTCCCCTGCCCCACTTCTTGGATCCTGAAAGTGAAGA--CTTTCTTGGTTTTCAG-TTCTGTACTAAAGAGAGACTCGCTCAGAAAACCCATCCTTCTCTCTGG-ACATTTAAGGGATCCAGTCTTTATGG----AGAGGGATAGAGATATCTCTGAAATAATTTAATAGCAGATT------TCTTTGACCCTGGCATTCACCTTGGGCACCACTGACTGACTTCCTCCCTCAGGCCTTGCTCCCTGTCCCACACCCCACTTAATTGGAGGTCTGCCTCCAGGTTTTAAGAGGCACTGGACTTCCTCTACCTAGGTCAGGACCAGAAGTCTCTGTTGTCCC----------ACTCAGAGACCTGGAACTTCCTACCTTAGGCTATCTTATCCTGATTCTAGATCTTCCAAAGGGATAGGAAGGTATCCCAGATCCTGGAGTTCAGGCTGGTGTCTGTATTTTGCACTCCCTCTCCC--------------------CCATTTGTCCTCTTCATTCTCAGCATGGTCACAAC--AGTGCTGCTTAGGTGGCCCACCCGGTATAATGCAAATT-TGTAAATTTTCTGACCCTTCTCCTTAGA-TCCTCCAAAAATCTACCTGACCCGCCACCCCATCTCTGACCATGAGGTCACCCTGAGGTGCTGGGCGCTGGGCTTCTACCCTGCGGAGATCACCCTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACAGAGGTTGTGGACACCAGGCCTGCAGGAG---ATGGGACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCCTCTGGACAGGAGCAGAGATACACGTGCC-ACGTGCAGCATGAGGGGCTGGCGGAGCCTGTCACGCGGAGATGGGGTAAGGAG----------GGCCTCG-GGGT-------AGAGCTTC---TACTCAGGGCAAGT-GGAGCTCTT
i canFam3.chr12            C 0 C 0
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=102385.000000
s hg38.chr6_GL000254v2_alt  1092215 16 +   4827813 CTGAAGACCTTTAACA
s panTro5.chr6             30057853 16 + 175400573 CTGAAGACCTTTAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30288498 16 + 173848474 CTGAAGACCTTTAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6096912 16 +   6154872 CTGAAGACCTTTAACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30391621 16 + 172585720 CTGGAGACCTTTAACA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     163864 16 +   1495729 CTGGAGACCTTTAGCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     744806 16 +    766320 CTGGAGACCTTTAACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29227314 16 -  71996105 CTGGAGACCTTTAACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      31105 16 +    273075 CTGGAGACCTTTAACA
i manLeu1.NW_012101121v1   C 0 M 3920
s colAng1.NW_012115566v1    2952195 16 -   3067355 CTGGAGACCTTTAACA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30200488 15 + 171630274 CTG-GAGCCTTCAGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341            16020 16 +    515838 CTGCAACCCTTCAGCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     396070 16 -   1771730 CTGCAGCACTTCAGCA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         16988396 16 -  18854210 TTGGAGCCTTTCAGCA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              985647 16 +  72498081 CTGGAGAATTTCAGCA
i canFam3.chr12            C 0 C 0
e aotNan1.NW_018496904v1     150634 22 -    383796 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=45470.000000
s hg38.chr6_GL000254v2_alt  1092231 8 +   4827813 GGGTCGGT
s panTro5.chr6             30057869 8 + 175400573 GGGTTGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30288514 8 + 173848474 GGGTTGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6096928 8 +   6154872 GGGTCGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30391637 8 + 172585720 GGGTCGGT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     163880 8 +   1495729 GGGTCGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     744822 8 +    766320 GGGTTGGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29227330 8 -  71996105 GGGTCGGT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2952211 8 -   3067355 GGGTGGGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30200503 8 + 171630274 GGGTCAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341            16036 8 +    515838 GGGTCAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     396086 8 -   1771730 GGGTCAGG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         16988412 8 -  18854210 GAGTCAGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              985663 8 +  72498081 GAGTCAGG
i canFam3.chr12            C 0 C 0
e aotNan1.NW_018496904v1     150634 22 -    383796 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=3365961.000000
s hg38.chr6_GL000254v2_alt  1092239 493 +   4827813 GGTGAGGGCTGGGGGTCAGA-----GACCCTCACCTTCACCTCCTTTCCCAGAGCAGTCTTCCCTGCCCACCATCCCCATCATGGGTATCGTTGCTGGCCTGGTTGTCCTTGCA---GCTGTAGTCACTGGAGCTGCGGTCGCTGCTGTGCTGTGGAGAAAGAAGAGCTCAGGTAAGGAAGGGGTGACAAGTGGGGTCTGAGTTTTCTTGTCCCACTGGGGGTTTCAAGCCCCAGGTAGAAGTGTGCCCTGCCTGGTT-ACTGGGAAGCACCATCCACACTCATGGGCCTACCCAGCCT-GGGCCCTGTGTGCCAGCACCTTCTCTTTTGTAAAGCACCTGTGACAATGAAGGACAGATTTATTACCTTGATGATTGTAGTGATGGGGACCTGA-TCCCAGTAATCACAGGT--CAGG--AGAAGGTCCCTGGCTAAGGACAGACCT-TAGGAGGGCAGTTGGTCGAG-GACCCACATCTGCTTTCCTTGTTTTTCCTGATCCCGCCCTG
s panTro5.chr6             30057877 493 + 175400573 GGTGAGGCCTGGGGGTCAGA-----GACCCTCACCTTCACCTCCTTTCCCAGAGCAGTCTTCCCTGCCCACCATCCCCATCATGGGTATCGTTGCTGGCCTGGTTGTCCTTGCA---GCTGTAGTCACTGGAGCTGCGGTCGCTGCTGTGCTGTGGAGGAAGAAGAGCTCAGGTAAGGAAGGGGTGACAAGTGGGGTCTGAGTTTTCTTGTCCCACTGGGGGTTTCAAGCCCCAGGTGGAAGTGTGCCCTGCCTGGTT-ACTGGGAAGCACCATCCACACTCATGGGCCTACCCAGCCT-GGGCCCTGTGTGCCAGCACCTTCTCTTTTGTAAAGCACCTGTGACAATGAAGGACAGATTTATTACCTTGATGATTGTAGTGATGGGGACCTGA-TCCCAGTAATCACAGGT--CAGG--GGAAGGTCCCTGGCTAAGGACAGACCT-TAGAAGGGCAGTTGGTCGAG-GACCCACATCTGCTTTCCTTGTTTTTCCTGATCCCGCCCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30288522 493 + 173848474 GGTGAGGCCTGGGGGTCAGA-----GACCCTCACCTTCACCTCCTTTCCCAGAGCAGTCTTCCCTGCCCACCATCCCCATCATGGGTATCGTTGCTGGCCTGGTTGTCCTTGCA---GCTGTAGTCACTGGAGCTGCGGTCGCTGCTGTGCTGTGGAGGAAGAAGAGCTCAGGTAAGGAAGGGGTGACAAGTGGGGTCTGAGTTTTCTTGTCCCACTGGGGGTTTCAAGCCCCAGGTGGAAGTGTGCCCTGCCTGGTT-ACTGGGAAGCACCATCCACACTCATGGGCCTACCCAGCCT-GGGCCCTGTGTGCCAGCACCTTCTCTTTTGTAAAGCACCTGTGACAATGAAGGACAGATTTATTACCTTGATGATTGTAGTGATGGGGACCTGA-TCCCAGTAATCACAGGT--CAGG--GGAAGGTCCCTGGCTAAGGACAGACCT-TAGAAGGGCAGTTGGTCGAG-GACCCACATCTGCTTTCCTTGTTTTTCCTGATCCCGCCCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6096936 492 +   6154872 GGTGAGGCCTAGGGGTCAGA-----GACCCTCACCTTAACCTCCTTTCCCAGAGCAGTCTTCCCTGCCCACCATCCCCATCATGGGTATCGTTGCTGGCCTGGTTGTCCTTGCA---GCTGTAGTCACTGGAGCTGCGGTCGCTGCTGTGCTGTGGAGGAAGAAGAGCTCAGGTAAGGAAGGGGTGACAAGTGGGGTCTGAGATTTCTTGTCCCACTGGGGGTTTCAAGCCCCAGGTAGAAGTGTGCCCTGCCTGGTT-ACTGGGAAGCACCATCCACACTCATGGGCCTACCCAGCCT-GGGCCCTGTGTGCCAGCACCTTCTCTTTTGTAAAGCACCTGTGACAATGAAGGACAGATTTATTACCTTGAT-ATTGTAGTGATGGGGACCTGA-TCCCAGTAATCACAGGT--CAGG--GGAAGGTCCCTGGCTAAGGACAGACCT-TAGGAGGGCAGTTGGTCGAG-GACCCACATCTGCTTTCCTTGTTTTTCCTGATCCCGCCCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30391645 490 + 172585720 GGTGGGGCCT-GGGGTCAGA-----GACCCTCACCTTCCCCTCCTTTCCCAGAGCAGTCTTTCCAGCCCACCATCCCCATCATGGGCATCATTGCTGGACTGGTTGTCTTTGCA---GCTGTTGTCACTGAAGCTGTGGTCACTTTTGTGCTGTGGAGGAAGAAGAGCTCAGGTAAGGAAGGGGTGATAAGTGGAGTCTGAGTTTTTTTGTCCCACTGAGGGTTCCAAGCCCCAGGTAGAA--ATGCCCTGCCTGGTT-ACTGGGAAGCACCATCTACCCTCATGGGCCAACCCAGCCT-ACGCCCTGTGTGCCAGCACTTACTCTTTTGTAAAGCACATGTGACAAAGAAGCACAGATTTATCACCTTGATTATTGTAGTGATGGGGACCTGA-TCCCAGTAATCACAGGT--CAGG--GGAAGGTCCCTGGCTAAGGACAGACCT-TAGGAGGGCAGTTAGTCCAG-GACCCACATCTGCTTTCCTTGTTTTCCCTTATCCTGCCCTG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     163888 488 +   1495729 TCTGGGGCCT-GGGGGTCAG-----AACCCTCACTTTCCCCTTTTTTCCCAGAGCCGTCTCTCCAGCCCACCATCCCCATCATGGGCATCATTGCTGGCCTGGTTGTCCTTGCA---GCTGTCGTCACTGGAGCTGTGGTCGCTGCTGTGCTACAGAGGAAGAAGAGCTCAGGCGAGGAAGGGGTGACAGCTGGGGTCTGAGATTTCTTGTCCCACTGAGGGTTCCAAGCCCCAGGTAGAA--GTGCCCT-CCCGGTT-ACTGAGAAGCACCATCCACACTTATGGGCTGACCCAGCCT-GGGCCCTGTGTGCCAGCACCTACTCTTTTGTAAAGCACCTGTGACAATGAAGGACAGATTTATCACGTTGATGATTGTGGTGATGGGGACCTGA-TCCCAGCAGTCACAGGT--CAAG--GGAAGGCTCCT-GCTGAGGACAGACCT-TAGGAGAGCAGTTGGTCCCA-GACCTACATCTGCTTTCCTTGTTTTTCCTGATCCTGCCCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002711v1     744830 457 +    766320 GGTGGGGCCT-GGGGTCAGA-----GACCCTCACCTTCCCCTCCTTTCCCAGAGCAGTCTTCCCAGCCCACTATCCCCATCATGGGCATCGTTGCTGGACAGGTTGTCTTTGCA---GCTGTTGTCACTGAAGCTGTGGTCACTTTTGTGCTGTGGAGGAAGAAGAGC----------------------------TCTGAGTTTTTTTGTCCCACTGAGGGTTCCAAGCCCCAGGTAGAA--ATGCCCTGCCTGGTT-ACTGGGAAGCACCATCTACACTCATGGATGG----TGCCT-AGGCCCTGTGTGCCAGCA-TTACTCTTTTGTAAAGCACATGTGACAAAGAAGCACAGATTTATCACCCTGATGATTGTAGTGATGGGGACCTGA-TCCCAGTAATCACAGGT--CAGG--GGAAGGTCCCTGGCTAAGGACAGACCT-TAGGAGGGCAGTTAGTCCAG-GACCCACATCTGCTTTCCTTGTTTTCCCTTATCCTGCCCTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29227338 490 -  71996105 GGTGGGGCCT-GGGGTCAGA-----GACCCTCACCTTCCCCTCCTTTCCCAGAGCAGTCTTTCCAGCCCACCATCCCCATCATGGGCATCATTGCTGGACTGGTTGTCTTTGCA---GCTGTTGTCACTGAAGCTGTGGTCACTTTTGTGCTGTGGAGGAAGAAGAGCTCAGGTAAGGAAGGGGTGACAAGTGGAGTCTGAGTTTTTTTGTCCCACTGAGGGTTCCAAGCCCCAGGTAGAA--ATGCCCTGCCTGGTT-ACTGGGAAGCACCATCTACACTCATGGGCCGACCCAGCCT-AGGCCCTGTGTGCCAGCACTTACTCTTTTGTAAAGCACATGTGACAAAGAAGCACAAATTTATCACCTTGATGATTGTAGTGATGGGGACCTGA-TCCCAGTAATCACAGGT--CAGG--GGAAGGTCCCTGGCTAAGGACAGACCT-TAGGAGGGCAGTTAGTCCAG-GACCCACATCTGCTTTCCTTGTTTTCCCTTATCCTGCCCTG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2952219 490 -   3067355 GGTGGGGCCT-GGGGTCAGA-----GACCCTCACCTTCCCCTCCTTTCCCAGAGTAGTCTTCCCAGCTCACCATCCCCATCGTGGGCATCATTGCTGGCCTAGTTGTCCTTGCA---GCTGTCCTCACTGAAGCTGTGGTCACTTCTGTGCTATGGAGGAAGAAGAGCTCAGGTAAGGAAGGGGTGACAAGTGAGGTCTGAGTTTTTTTGTCCCACTGAGGGTTCCAAGCCCCAGGTAGAA--ATGCCCTGCCTGGTT-ACTGGGAAGCACCATCTACACTCATGGGCCGACCCAGCCT-GGGCCCTGTGTGCCAGCACTTACTCTTTTGTAAAGCACCTGTGACAAGGAAGGACAGATTTATCACCTTGATGATTGTAGTGATGGGGACCTGA-TCCCAGTAATCACAGGT--CAGG--GGACGGTCCCTGGCTAAGGACAGACCT-TAGGAGGGCAGTTAGTCCAG-GACCCACATCTGCTTTCCTTGTTTTCCCTGATCATGCCCTG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30200511 490 + 171630274 GCTGAGGTCT-GGGGTCAGG-----GCCCCTCATCTTCCCCTCCTTTCCCAGAGCCGCCTTCCCAGCCCACCATCCCCATTGTGAGCATTGTTGCTGGCCTGGTTGTCCTAGCA---GCTGTGGTCACTGGAGCTGTGGTCTCTGCTGCGATGTGGAAGAGAAAGAGCTCAGGTAGAGAAAGGGTGAGGGGTGGGGTCTGGGTTTTCTTGTCACACTGGGTATTTCAAGCCCCAGGTGGAAGTGTTCTCTGCCTCATT-ACTGGGAAGCACCATCCACACT--TGGGCCGACCCAGCCTGGGGCTCTGTGTGCCAGCACTTACTCTTTTGTGAAGCACATATGACAATGAACGACAGATGTATCACCTTGACGATTGTGGTGTTGGGGTCCTGA-TTCCAGCAGTCACAAGT--CAGG--AGAAGGTCCCT-GCTAAGGACAGACCT-TAGGAGGGCGGTTGGTCTAG-GACCCACACCTGCTTTCCTTGTGTTTTCTGATCCTGCCCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341            16044 456 +    515838 GCTGGGGCCT-GGGATCAGG-----GCCCCT-------------------------------------CACCATCCCCATCGTGGGCATCGTTGTTGGCCTGGCTGTCCTTGGA---GCTGTAGTCACTGGAGCTGTGTTCGCTGCTGTGATGTGGAGGAAGAAGAGCTCAGGTGAGGAAGGGGTGAGGAGTGGGGTCTGAGATTTCTTGTCCCACTGAGGGTTCCAAGCCCCAGGTAGAAGTGTGCCCTGCCTGGTT-ACTGGGAAGCATCATCCACACTCATGAGCCGACCCAGCCT-GGGCCCTGTGTGCCAGCACTTACTCTTGTGTAAAGCACCTGTGACAATGAAGGACAGATGTGTCACCTTGATGATTGTGGTGATGGGGACCTGA-TCCCAGCAGTCACAGGTCACAGG--GGAATGTCCCT-GCTGAGGACAGTCCT-CAGGAGGGCAGTTGGTCCAA-GACCCACACCTGCTTTCCTTGTTTTTCCTGATACTGCTCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     396094 493 -   1771730 TCTGGGACCTGGGGGTCAGG-----GCCCCTCACCTTCCCCTCCTTTCCCAGAGCCGCCTTCCCAGCCCACCATCCCCATCGGGGGCATCGTTGCTGGCCTGGTTGTCCTTGGA---GCTGTAGTCACTGGAGCTGTGGTCACTGCTGTGATGTGGAGGAAGAAGAGCTCAGGTGAGGAAGGGGTGAGGAGTGGGGTCTGAGTTTTCTTGTCCCACTGGGGATTTCAAGCCCCAGGTAGAAGTGTGCCCTGCCTGGTT-ACTGGGAAGCATCATCCACACTCATGAGCCGACCCAGCCT-GGGCCCTGTGTGCCAGCACTTAA-CTCTTGTAAAGCACCTGTGACAATGAAGGACAGATGTATCACCTTGATGACTGTGGTGATGGGGACCTGA-TCCCAGCAGTCACAGGTCACAAG--GGAAGGTCCCT-GCTGAGGACAGTCCT-TAGAAGGGCAGTTGGTGCAG-GACCCACACCTGCTTTCCTTGTTTTTCCTGATCCTTCCCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     150656 493 -    383796 GCGGGGGCCT-GGGATCAGG-----GCCCCTCACCTTCCCCTCTTTTCCCAGAGCTGTCTTCTGAGCCCACCATCCCCATCGTGGGCATCGTTGCTGACCTGGCTGTCCTTTGA---GCTGTAGTCACTGGAGCTGTGATCACTGCTGTGATGTGGAGGAAGAAGAGCTCAGGTGAGGAAGGGGTGAGGAGTGGGGTCTGAGATTTCTTGTCCCACTGAGGGTTCCAAGCCCCAGGTAGAAATGTCCCCTGCCTGGTT-ACTGGGAAGCACCATCCACACTCATGAGCTTACCCAGCCT-GGACCCTGTGTGCCAGCACTTACTCTTGTGTAAAGCACCTGTGACAATGAAGGACAGATGTATCACCTTGATGACTGTGGTGATGGGGACCTGA-TCCCAGCAGTCACAGGTCACAAG--GGAAGGTCCCT-GCTGAGGACAGTCCT-TAGGGGGGCAGTTGGTCCAG-GACCCACACCTGCTTTCCTTGTTTTTCCTGATCCTGCCCTG
i aotNan1.NW_018496904v1   I 22 C 0
s otoGar3.GL873550         16988420 472 -  18854210 ACTGAGGCCT-GGGGTCAGA------CCCCTTACCTTCCTGTTCTTTCTCAGAGCCGTATTCCCAGCCCAGCATCCCCATGA---------TTGTTGGCATGGTTTTCCTTGGA---ACTGTGCTCCTTGGAGCTGTGGTTGCCTTTGTGATGTGGAGGAAGAA---CTCAGGTAGGGAAAGGATGAGGGTCAGGGTCTGTATTTTCTTGTCCCACTG-GAATTTCAA--CCCCGGTAGTAGTGTGCCCTGCCCCATTAACTGGGAAGTTCTATCCACACACACCTGCCTACCCAGCCTGGGGCCCTGTGTGTCAGCACTTACTCCTTTGTATAGCATATGTGACAATGAAGGACAGAATT-TTAATGTGATGATTATGGTGATGGGGACCTGATTCCCAGGAATCACAGGT--CAGA--GAGGGAGGACTGACTTAGGACAGACCTCCAGGAGGGCAGTT--------GATCCACTTTTCCTTCCCTTGTGATTCCTGATCCTGCCTTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              985671 467 +  72498081 -------TCT-CAAGTCAGAGGCTGGACCCTCATCCTCCCTCCCCTTTCCAGAGCCTTCCCCTCTGTCCACCATTGTCATCGTCAGCATTGCTGCT---CTGGTTCTCCTCGTGGTCGCTGGGGTGATTGGAGCTGTGATC------------TGGAGGAAGCAGCGCTCGGGTAGGGAACCGACTGAATAC----TCTGTGTTTTCCTGTCCTGTTGGGGGTTT-----CCTAGGGAGCACGCTGTCCTGCCTTGTT-AACGGGAGGTGCCGTCCATACACGGTTACTCTCCCACACT-GGA-GCTGTGTACTCACACTCACTGTGCAGCAAA-CACTTGGGAAAATGAAGGCCAGAGTT-TCGCCTTGGTGATTCTGGTGACGGGGACTGAT-TCCCAGCCGTCACAGGA--CAGAGCGGAAGGCCCCT-GCTGAGGACAGACCTCCAGCAAGTCAGGTGGTCCAGTGACCCCTCACCTCATGGCTTGTCT--CCTGACCCTGACCTG
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=283050.000000
s hg38.chr6_GL000254v2_alt  1092732 40 +   4827813 GGTCTGCAGTCACAC-ATTTCTGGAAACTTCTCGAGGGTCC
s panTro5.chr6             30058370 40 + 175400573 GGTCTGCAGTCACAC-ATTTCTGGAAACTTCTCGAGGGTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30289015 40 + 173848474 GGTCTGCAGTCACAC-ATTTCTGGAAACTTCTCGAGGGTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6097428 40 +   6154872 GGTCTGCAGTCACAC-ATTTCTGGAAACTTCTCAAGGGTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30392135 40 + 172585720 GGTCTGCAGTCACAC-ATTTCTGGAAACTTCTCTGGGGTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29842309 40 - 170955103 AATCTGCAGTTACAT-ATTTCTGGAAACTTCTCTGGGATCA
i macFas5.chr4             N 0 C 0
s macNem1.NW_012012100v1     164376 40 +   1495729 GGTCTGCAGTCACAC-ATTTCTGGAAACTTCTCGAGGGTCC
i macNem1.NW_012012100v1   C 0 I 50960
s cerAty1.NW_012002711v1     745287 40 +    766320 GGTCTGCAGTCACAC-ATTTCTGGACACTTCTCTGGGGTCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29227828 40 -  71996105 GGTCTGCAGTCACAC-ATTTCTGGAAACTTCTCTGGGGTCC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2952709 40 -   3067355 GGTCTGCAGTCACAC-ATTTCTGGAAACTTCTCTGGGGTCC
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30201001 38 + 171630274 GGTGTATAATCATGA---TTCTAGAAACTTCTCTTGGGTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341            16500 40 +    515838 GGTCTGCAGTCACAC-ATTTCTGGAAACTTCTCTGGGTTCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     396587 41 -   1771730 AGTCTGGAAGGATTTCATTTCTGGAAACTTCTCTGGGGTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     151149 40 -    383796 GGTCTGCAGTCACAC-ATTTCTGGAAACATCTCTGGGGTCC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16988892 38 -  18854210 GGTCTTGAGTCAGAG---TTCTGGAAACCTCTCTGGGATCC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              986138 37 +  72498081 GGCGGTCAGTCAGAA---TTCTGCAGACTCACTCTGCACC-
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=3138124.000000
s hg38.chr6_GL000254v2_alt  1092772 503 +   4827813 AAGACTAGGAGGTTCCTCTAGGACCTCATGGCCCTGCCACCTTTCTGGCCTCTCACAGGACA--TTTTCTTCC--CACAGATTGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATCCCTGAGATCCTTGGGATCTTGTGTTTGGGAGCCCATG--GGGGA-GCTCACCCACCCCACAATTCCTCCTCTGGCCACATCTCCTGTGGTCTCTGACCAGGTGCTGTTTTTGTTCTACTCTAGGCAGTGACAGTGCCCAGGGCTCTAATGT---GTCTCTCACGG---CTTGTAAATGTGACACCCC-----GGG----------GGG-CCTGATGTGTGTGGGTTGTTGAGGGGAAC--AGGGGACATAGCTGTGCTATGAGGTTTCTTTGACTTCAATGTATTGAGCATGTGATGGGCTGTTTAAAGTGTCACCCCTCACTGTGACTGATAT-----------GAATTTGTTCATGAATAT--TTT-TCTGTAGTGTGAAA-CAGCTGCCCTGTGTGGGACTGAGTG--GCAAG
s panTro5.chr6             30058410 503 + 175400573 AAGACTAGGAGGTTCCTCTAGGACCTCATGGCCCTGCCACCTTTCTGGCCTCTCACAGGACG--TTTTCTTCC--CACAGATTGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATCCCTGAGATCCTTGGGATCTTGTGTTTGGGAGCCCATG--GGGGA-GCTCACCCACCCCACAATTCCTCCTCTAGCCACATCTCCTGTGGTCTCTGACCAGGTGCTGTTTTTGTTCTACTCCAGGCAGTGACAGTGCCCAGGGCTCTAATGT---GTCTCTCACAG---CTTGTAAATGTGACACCCC-----GGG----------GGG-CCCGATGTGTGTGGGTTGTTGAGGGGAAC--AGTGGACATAGCTGTGCTATGAGGTTTCTTTGACTTGAATGTATTGAGCATGTGATGGGCTGTTTAAAGTGTCACCCCTCACTGTGACTGATAT-----------GAATTTGTTCATGAATAT--TTT-TCTGTAGTGTGAAA-CAGCTGCCCTGTGTGGGACTGAGTG--GCAAG
i panTro5.chr6             C 0 I 14
s panPan2.chr6             30289055 503 + 173848474 AAGACTAGGAGGTTCCTCTAGGACCTCATGGCCCTGCCACCTTTCTGGCCTCTCACAGGACG--TTTTCTTCC--CACAGATTGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATCCCTGAGATCCTTGGGATCTTGTGTTTGGGAGCCCATG--GGGGA-GCTCACCCACCCCACAATTCCTCCTCTAGCCACATCTCCTGTGGTCTCTGACCAGGTGCTGTTTTTGTTCTACTCCAGGCAGTGACAGTGCCCAGGGCTCTAATGT---GTCTCTCACAG---CTTGTAAATGTGACACCCC-----GGG----------GGG-CCTGATGTGTGTGGGTTGTTGAGGGGAAC--AGTGGACATAGCTGTGCTATGAGGTTTCTTTGACTTGAATGTATTGAGCATGTGATGGGCTGTTTAAAGTGTCACCCCTCACTGTGACTGATAT-----------GAATTTGTTCATGAATAT--TTT-TCTGTAGTGTGAAA-CAGCTGCCCTGTGTGGGACTGAGTG--GCAAG
i panPan2.chr6             C 0 I 14
s gorGor5.CYUI01015250v1    6097468 502 +   6154872 AAGACTAGGAGGTTCCTCTAGGACCTCATGGCCCTGCCACCTTTCTGGCCTCTCACAGGACA--TTTTATTCC--CATAGATTGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATCCCTGAGATCCTTGGGATATTGTGTTTGGGAGCCCATG--GGGGA-GCTCACCTACCCCACAATTCCTCCTCTGGCCACATCTCCTGTGGTCTCTGACCAGGTGCTGTTTTTGTTCTACTCCAGGCAGTGACAGTGCCCAGGGCTCTAATGT---GTCTCTCACGG---CTTGTAAATGTGACACCCC-----GGG----------GGG-CCTGATGTGTGTGGGTTGTTGAGGGGAAC--AGTGGACATAGCTGTGCTATG-GGTTTCTTTGACTTGAATGTATTGAGCATGTGATGGGCTGTTTAAAGTGTCACCCCTCACTGTGACTGATAT-----------GAATTTGTTCATGAATAT--TTT-TCTGTAGTGTGAAA-CAGCTGCCCTGTGTGGGACTGAGTG--GCAAG
i gorGor5.CYUI01015250v1   C 0 I 14
s rheMac8.chr4             30392175 500 + 172585720 AAGACTAGGAGTTTCCTCTAGGGCCTCATGGTGCTGCCACCTTTCTGACTTCTCAAAGGACA--TTTTCTTCC--CACAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGGAAGTAAGTATGAAGGAGGCTGATCCCTGAGATCCTTGGGATCTTGTGGTTGGGAGCCCATG--GGGGA-GCTCACTCAGGCCATATTTCCTCCTCTGGCCATATCTCCTGTGGGCTCTGACCAGGTCCTGTTTTTGTTGTACCCCAGGCAGTGACAGTGTCCAGGGCTCTG--AT---GTCTCTCACGG---CTTGTAAATGTGAGACCCT------GG----------GGA-CCAGATGTCTGTGGGTTGTTGGGGGGAAC--AGTGGACACAGCTGTGCCATGAGGTTTCTTTGACTTGGATGTATTGAGCATGTGCTGGGCTGTTTCAAGTGTCACCCCTCACTGTGACAGATAT-----------GAATTTGTTCATGAATGT--TTT-TCTGCAGTCTGAGA-CAGCTGCCCTGTGTGGGACTGAATG--GCAAG
i rheMac8.chr4             C 0 I 14
s macFas5.chr4             29842349 504 - 170955103 ATGACTAGGAGGTTGCTCTAGGACCTTATGGCCCTGGCTCCTTTCTGGCCTCTCACAGGACATTTTTTTTTCC--CACAGATAGAAACAGAGGGAGCTACTCTCAGCCTACAAGTAAGTATGAAGGAGGCTGATCCCTGAGATTGTTGCGGTAT--TGGTCAGGAGCCCATG--AGGGA-GCTCACCCACCCCACAGT---TCCTCTAGCCATAT---CTGTGGGCTCTGACCGGGTCCCGTTTTTGTTCTACCCCAATCATTGACAGTGCCCA-GGCTCTGGTGT---GTCTCTCACAG---CTAATAAAGGTGACACTCCAGGGCAGG----------GGC-CCTGATGTGAGTGGGGTGTTGGGAGGAACAGAGGGGACTCAGCTGTGCTATGGGGTTTCTTTGACTTGGATGTCTTGAGCATGAAATGGGCTGTTTAGAGTGTGACCCATCACTGTGACTGATAT-----------GAATTTGTTCATGAATGT--TTTCTCTATAGTGTGAGA-CAGCTTCCTTGTGTGGGACTGAGAA--GCAAG
i macFas5.chr4             C 0 I 14
s cerAty1.NW_012002711v1     745327 500 +    766320 AAGACTAGTAGTTTCCTCTAGGGTCTCATGGCACTGCCATCTTTCTGACCTCTCAAAGGACA--TTTTCTTCC--CACAGATAGAAAAGAAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATCCCTGAGATCCTTGGGATCTTGTGGTTGGGAGCCCATG--GGGGA-GCTCACTCAGGCAATATTTCCTCCTCTGGCCATATCTCCTGTGGGCTCTGACCAGGTCCTGTTTTTGTTGCACCCCAGGCAGTGACAGTGTCCAGGGCTCTG--AT---GTCTCTCACGG---CTTGTAAATGTGAGACCCT------GG----------GGG-CCTGATGTGTGTGGGTTGTTGGGGGGAAC--AGTGGACACGGCTGTGCCATGAGGTTTCTTTGACTTGGATGTATTGAGCATGTGCTGGGCTGTTTCAAGTGTCACCCCTCACTGTGACAGATAT-----------GCATTTTTTCATGAATGT--TTT-TCTGAAGTCTGAGA-CAGCTGCCCTGTGTGGGACTGAGTG--GCAAG
i cerAty1.NW_012002711v1   C 0 I 14
s chlSab2.chr17            29227868 500 -  71996105 AAGACTAGGAGTTTCCTCTAGGGCCTCATGGCGCTGCCACCTTTCTGACCTCTCAAAGGACA--TTTTCTTCC--CACAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATCCCTGAGATCCTTGGGATCTTGTGGTTGGGAGCCCATG--GGGGA-GCTCACTCAGGCAATATTTCCTCCTCTGGCCATATCTCCTGTGGGCTCTGACCAGGTCCTGTTTTTGTTGTCCCCCAGGCAGTGACAGTGTCCAGGGCTCTG--AT---GTCTCTCACGG---CTTGTAAATGTAAGACCCT------GG----------GGG-CCTGATGTGTGTGGGTTGTTGGGGGGAAC--AGTGGACACAGCTGTGCCATGAGGTTTCTTTGACTTGGATGTATTGAGCATGTGCTGGGCTGTTTCAAGTGTCACCCCTCACTGTGACAGATAT-----------GAATTTGTTCATGAATGT--TTT-TCTGCAGCCTGAGA-CAGCTGCCCTGTGTGGGACTGAGTG--GCAAG
i chlSab2.chr17            C 0 I 14
s colAng1.NW_012115566v1    2952749 500 -   3067355 AAGACTAGGAGTTTCCTCTAGGGCCTCATGGCGCTGCCACCTTTCTGACCTCTCAGAGGACA--TTTTCTTCC--CACAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGAATGAAGGCGGCTGATCCCTGAGATCCTTGGGATCTTGTGGTTGGGAGCCCATG--GGGGA-GCTCACTCAGGCAATATTTCCTCCTCTGGCCACATCTCCTGTGGGCTCTGACCAGGTCCTGTTTTTGTTGTACCCCAGGCAGTGACAGTGCCCAGGGCTCTG--AT---GTCTCTCACGG---CTTGTAAATGTGAGACCCT------GG----------GGG-CCTGATGTGTGTGGGTTGTTGGGGGGAAC--TGTGGACATAGCTGTGCCATGAGGTTTCTTTGACTTGGATGTATTGAGCACGTGATGGGCTGTTTAAAGTGTCACCCCTCACTGTGACAGATAT-----------GAATTTGTTCATGAATGT--TTT-TCTGCAGTCTGAGA-CAGCTGCCCTGTGTGGGACTGAGTG--GCAAG
i colAng1.NW_012115566v1   C 0 I 14
s calJac3.chr4             30201039 464 + 171630274 AGGACTAAGAGGTTCCTCTAAAGTCTCATGGCCCTGCCTTCTTCCTGCCCT-TCAGAGGACA--TTTTCTTCC--CTCAGGTGGAAAACAAGGGAGCTACTCTCAGGCTACGTGTAAG---------------------------------TGGTGGGGGCGGGA----GTGTGGAGGA-GCTCACCCACCCCATAATTCCTCCTGTC-CCACATCTCCTGCGGACTCTGATCAGGTCCTGTTTTTGTTCCACCCTAGGCAGTGACAGTGCCCGGGGCTCTGATGT---ATCTCTCACAG---TTTGTAAAGGTGAGACCCT------GG----------GGG-TCTCTAGTGGGCGGG-AGTAGGGGCAGAT--G--GGACAGGACTGGGTAATGTGGATTCTTTGATTGGGATGTTTCGAGTGTGTGGTGGGCTGTCCAGAGTCTCATCACTTAACATGACTGACCT-----------GAATTTGTTCATGACTGTTGTTT-TCTGTAGTCTGAGA-CAGCTGCCTTGTGTGGGACTGAGAT--GCAGG
i calJac3.chr4             C 0 I 14
s saiBol1.JH378341            16540 505 +    515838 CAGACTAGGAGGTTCCTCTAGGACCTCATGGCCCTGCCACCATTTTGGCCTCTCACAGAATA--TTTTCTTCA--CACAGATAGAAAAGGAGGGAACTACTCTCAGGCTGCAAGTAAGTATGAAGGAGTCTGATCCCTGAGATCATTGGGATATTGTGGTCGGGAGCTCGTGGTGGGGA-GCTCACCCAGCCAGCAATTCCTCCTATAGCTGCATCTCCTGTGCGTTCTGACCAAGTCCTGTTTTTGTCCTATCCCAGGCAATGGCAGTGCCCAGGGCTCTGATGT---GTCTCTCACATCACCTTGTAAATGTGGGACCCT------GA----------GGA--CCCAGATGTGTGGG-TGTTGGGGAGAAC--AGTGTACACAGCTGTGCTCTGGGGCTTGTTTGAGTGGGATGTATTGAGCATGTGATGGGCTCTTTAAAGTTTCACCCCTCACTGTGAGTGTTAT-----------GAATTTGTTCATGAATAT--TTT-TCTATAGTATGAGA-CAGCTGCCTTGTGTGGGACTGAGAG--GCAGG
i saiBol1.JH378341         C 0 I 14
s cebCap1.NW_016107755v1     396628 485 -   1771730 AAGACCAGGAGA-TCCTCTACGACCTCATGGCCGTGCCACCTTTCTGACCCCTCACAGGACA--TTTTCTTCC--CACAGATAAAAAAGGAGGAAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATCCCTGAGATCATTGGGATATTGTGGTCAGGAGCCCATG--GGGGA-GCTCACCCAGCTAA---------------CAGCATTTCCTGTAGGCTCTGACCAGGTTTAGTTTTTGTTCTACCCCAGGCAGCGACAGTTCCCAGGGCTCTGATGTGTCGTCTCTCATGG---CTTGTGACGGTGAGATCCT------GGTGGGGGTGGTGGG--CTGATGTGTGTGGGTTGTTGTGGGGAAC--AGTGGGCACAGCTGTGTTATGAGGTTTCTTTGACTTGGATGTATTGAGCTGGTGATGGGTTGTTTAAAGT-------------GTGACCGATAT-----------AAATTTGTTCATGAATTT--TTT-TTTATAGCATGAGA-CAGCTGCCTTGTGTGTGACTGAGAG--GCAAG
i cebCap1.NW_016107755v1   C 0 I 18
s aotNan1.NW_018496904v1     151189 505 -    383796 AAGACTAGGAGGGTCCTCTAGGACCTCATGGCCCTGCCACCATTCTGGCCTCTCACAGAATA--TTTTCTTCC--CACAGATAGAAAAGGAGGAAGCTACACTGAGGCAGCAAGTAAGTATGAAGGAGGCTGATCCCTGAGATCGTTGGGATATTGTGGTCGGGATCCCATG--GGGGA-GCTCACCCAGCCCGCAGTTCCTCCTATAGCTGCATCTCCTGTGAGTTCTCACCAGGTCCTGTTTTAGTTCTATCCCAGACAATGACAGTGCCCGGGGCTCTGATGT---GTCTCTCACATCACCTTGTAAAATTGAGACCCT------GA----------GGACCCTGATGTGTGTGGG-TGTTGGGGAGAAC--AGTGTACACAGCTGTGCTATGGAGTTTGTTTGAGTGGGATGTATTGAGCATGTGGTGGGCTCTTTAAAGTGTCACCCCTCACTGTGACTGATAC-----------GAATTTGTTAATGAATAT--TTT-TCTATAGTGTGAGA-CGGCTGCCTTGTGTGGCACTGAGAG--GCAAG
i aotNan1.NW_018496904v1   C 0 I 14
s otoGar3.GL873550         16988930 486 -  18854210 AAGACTAGGGGGTTTCTCTAGGACCTCATAGCCCTGCCTGCTCCTTGGCTTTTCATAGGGCA--TTTTCTTCT--CACAGGTGGAAAAGGAGGGAGCTACACTCAGGCTGCAAGTAAGTACAGGGAGTGATGATCTGTGAATCCTCTAGGATAGTGTATACAAGAGCCCATG--ATGGACTCTCAGCCA---CATAGTTCCTGCTGTAACCACATCTTCTGTGGGCTCTGACCAGATCCTATTTT-GTTCAACCCCAGGCAGTGGCAGTGCCCAGGGATCAAATGT---GTCTCTCACAG---CTTGTAAAGGTGAGACCCA------GG----------GAA-TGTGATATGA------AGGTGGGGTAGACAGAGGGGACACAGCTGGGTTTTGAGGATTCTTTGG-TGGGACATTTTGAGCATGTGGTGGGTTGTTC--AGTGTTACCACTTGCTACGATTAAACT-----------GAATTTGT---TGCCTGTTATTT-TCTATAGCCTGAAA-CAGCAGTCTTGTGTGGGATTAAGTG-------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              986175 470 +  72498081 AGGACTGGGAGCTTCCTCGAGGATCTCCTGGCCCAGCCCTGTGCCCGGCCTCTCACATGATG--TTTTCTTCCCACACAGGAGGAAAAGGACCAGGCTACTCTCATGCTGCACGTGAGTATGCAGGGAG-TGATCCCTGAGACCCCGGGGG-AGTGTAGACAGGACCCCATG---GGGA-GCTCACCC---CCACAGCTGCTCCTTTAGTCTCACCTCCTGTGAGCTCTGACCACGTCCTGTTT--ATTCTCCTCTAGGTGATGACAGTGCCCAGGGCTCTGATGT---GTCTCTGACAG---CTCCTAGAGGTGAGACCCC-----AGA----------GAC-CCTGAAGTGGGGAGG--GTTGGGGC--AC--TGGGGACCAGA---------------------------------TGAGCACGAGG-GGGCTGTTGAGAATGTCAGCACTTA-TGTGACCGACCTCACAGTACCGACAATTTGTACTTGATTTT--TTC-TC-ACAGTGTGAGACCAGCTGCCCTGTG-GGGACTGAGCGATGCAAG
i canFam3.chr12            C 0 I 13
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=22033.000000
s hg38.chr6_GL000254v2_alt  1093275 4 +   4827813 TCCC
s panTro5.chr6             30058927 4 + 175400573 TCCC
i panTro5.chr6             I 14 C 0
s panPan2.chr6             30289572 4 + 173848474 TCCC
i panPan2.chr6             I 14 C 0
s gorGor5.CYUI01015250v1    6097984 4 +   6154872 TCCC
i gorGor5.CYUI01015250v1   I 14 C 0
s rheMac8.chr4             30392689 4 + 172585720 TCCC
i rheMac8.chr4             I 14 C 0
s macFas5.chr4             29842867 4 - 170955103 TCCT
i macFas5.chr4             I 14 C 0
s cerAty1.NW_012002711v1     745841 4 +    766320 TCCC
i cerAty1.NW_012002711v1   I 14 C 0
s chlSab2.chr17            29228382 4 -  71996105 TCCC
i chlSab2.chr17            I 14 C 0
s colAng1.NW_012115566v1    2953263 4 -   3067355 TCCC
i colAng1.NW_012115566v1   I 14 C 0
s calJac3.chr4             30201517 3 + 171630274 -CCC
i calJac3.chr4             I 14 I 1
s saiBol1.JH378341            17059 3 +    515838 -TCC
i saiBol1.JH378341         I 14 I 1
s aotNan1.NW_018496904v1     151708 4 -    383796 TCCC
i aotNan1.NW_018496904v1   I 14 C 0
s canFam3.chr12              986658 4 +  72498081 TCAC
i canFam3.chr12            I 13 C 0
e otoGar3.GL873550         16989416 0 -  18854210 C
e cebCap1.NW_016107755v1     397113 18 -   1771730 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=225680.000000
s hg38.chr6_GL000254v2_alt  1093279 30 +   4827813 TTTGTGACTTCAAGAACC-CTGACTTCTCTT
s panTro5.chr6             30058931 30 + 175400573 TTTGTGACTTCAAGAACC-CTGACTTCTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30289576 30 + 173848474 TTTGTGACTTCAAGAACC-CTGACTTCTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6097988 30 +   6154872 TTTGTGACTTCAAGAACC-CTGACTTCTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30392693 30 + 172585720 TTTGTGACTTCAAGAACC-CTGACTTCTGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29842871 30 - 170955103 TTTGTGACTTCAAGAAGC-CTGAATTCTCCT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     745845 30 +    766320 TTTGTGACTTCAAGAACC-CTGACTTCTTTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29228386 30 -  71996105 TTTGTGACTTCAAGAACC-CTGACTTCTTTT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2953267 30 -   3067355 CTTGTGACTTCAAGAACC-CTGACTTCTTTT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30201521 31 + 171630274 TTTGTGACTTCAAGAGCCTCTGGCATCTCTT
i calJac3.chr4             I 1 I 43
s saiBol1.JH378341            17063 30 +    515838 TTTGTGACTTCAAGAACC-CTGCCTTCTGTT
i saiBol1.JH378341         I 1 I 43
s cebCap1.NW_016107755v1     397131 30 -   1771730 TTTGTGACTTCTAGAACC-CTGACTTCTCTT
i cebCap1.NW_016107755v1   I 18 I 57
s aotNan1.NW_018496904v1     151712 30 -    383796 TTTGTGACTTCAAGAACC-CTGACTTCTCTT
i aotNan1.NW_018496904v1   C 0 I 43
s otoGar3.GL873550         16989416 31 -  18854210 TTCATGCCTTCAAGAGCCTCTGTCTTCTCTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              986662 30 +  72498081 GTGATGACATCAACAACC-CTGGCTTGTCTC
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1293.000000
s hg38.chr6_GL000254v2_alt  1093309  6 +   4827813 TGTGCA----------------------------------------------------
s panTro5.chr6             30058961  6 + 175400573 TCCGCA----------------------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30289606  6 + 173848474 TCCGCA----------------------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098018  6 +   6154872 TCTGCA----------------------------------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30392723  6 + 172585720 TCTGCA----------------------------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29842901  6 - 170955103 TCTGCA----------------------------------------------------
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     745875  6 +    766320 TCTGCA----------------------------------------------------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29228416  6 -  71996105 TCTGCA----------------------------------------------------
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2953297  6 -   3067355 TCTGCA----------------------------------------------------
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30201595  6 + 171630274 TGTGAG----------------------------------------------------
i calJac3.chr4             I 43 I 8
s saiBol1.JH378341            17136  6 +    515838 TGTGAG----------------------------------------------------
i saiBol1.JH378341         I 43 I 8
s aotNan1.NW_018496904v1     151785  6 -    383796 TGTGAG----------------------------------------------------
i aotNan1.NW_018496904v1   I 43 I 8
s otoGar3.GL873550         16989447  6 -  18854210 TCTGCA----------------------------------------------------
i otoGar3.GL873550         C 0 I 43
s canFam3.chr12              986692 56 +  72498081 --TGCAAACAGTGTCAGGATGTGCCTGTGTCCCTAGGAGCATAATGTGAGGAGGTGGG
i canFam3.chr12            C 0 C 0
e cebCap1.NW_016107755v1     397161 57 -   1771730 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=29032.000000
s hg38.chr6_GL000254v2_alt  1093315 5 +   4827813 GAGAC
s panTro5.chr6             30058967 5 + 175400573 GAGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30289612 5 + 173848474 GAGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098024 5 +   6154872 GAGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30392729 5 + 172585720 AAGGC
i rheMac8.chr4             C 0 I 51
s macFas5.chr4             29842907 5 - 170955103 AAGAT
i macFas5.chr4             C 0 I 51
s cerAty1.NW_012002711v1     745881 5 +    766320 AAGGC
i cerAty1.NW_012002711v1   C 0 I 51
s chlSab2.chr17            29228422 5 -  71996105 AAGGC
i chlSab2.chr17            C 0 I 51
s colAng1.NW_012115566v1    2953303 5 -   3067355 AAGAC
i colAng1.NW_012115566v1   C 0 I 1139
s calJac3.chr4             30201609 4 + 171630274 GAGA-
i calJac3.chr4             I 8 C 0
s saiBol1.JH378341            17150 5 +    515838 GAGAC
i saiBol1.JH378341         I 8 C 0
s cebCap1.NW_016107755v1     397218 5 -   1771730 GAGAC
i cebCap1.NW_016107755v1   I 57 C 0
s aotNan1.NW_018496904v1     151799 5 -    383796 GAGAC
i aotNan1.NW_018496904v1   I 8 C 0
s otoGar3.GL873550         16989496 5 -  18854210 GAGAC
i otoGar3.GL873550         I 43 C 0
s canFam3.chr12              986748 5 +  72498081 GAGAT
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1095358.000000
s hg38.chr6_GL000254v2_alt  1093320 202 +   4827813 CAGCCCACCCCTGTGCCCACCATGACCCTCT-TCCTCATGCTGAACTGCATTC-CTTCCCCAATCACCTTTCCTGTTCCAGAAA---AGGGGCTGGGATGTCTCCGTCTCTGTCTCAAATTTGTGGTCCACTGAGCTATAA---CTTACTTCTGTAT-T-AAAATTAGAATCTGAGTGTAAATTTACTTTTTCAAATTATTTCCAAGAGAGA
s panTro5.chr6             30058972 205 + 175400573 CAGCCCACCCCTGTGTCCACCATGACCCTCT-TCCTCATGCTGAACTGCATTC-CTTCCCCAATCACCTTTCCTGTTCCAGAAA---AGGGGCTGGGATGTCTCCGTCTCTGTCTCAAATTTGTGGTGCACTGAGCTATAACTTCTTACTTCTGTAT-T-AAAATTAGAATCTGAGTATAAATTTACTTTTTCAAATTATTTCCAAGAGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30289617 205 + 173848474 CAGCCCACCCCTGTGTCCACCATGACCCTCT-TCCTCATGCTGAACTGCATTC-CTTCCCCAATCACCTTTCCTGTTCCAGAAA---AGGGGCTGGGATGTCTCCGTCTCTGTCTCAAATTTGTGGTGCACTGAGCTATAACTTCTTACTTCTGTAT-T-AAAATTAGAATCTGAGTATAAATTTACTTTTTCAAATTATTTCCAAGAGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098029 204 +   6154872 CAGCCCACCCCTGTGTCCACCATGACCCTCT-TCCTCATGCTGAACTGCATTC-CTTCCCCAATCACCTTTCCTGTT-CAGAAA---AGGGGCTGGGATGTCTCCGTCTCTGTCTCAAATTTGTGGTGCACTGAGCTATAACTTCTTACTTCTGTAT-T-AAAATTAGAATCTGAGTATAAATTTACTTTTTCAAATTATTTCCAAGAGAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30392785 205 + 172585720 CAGCCCAACCCCATGTCCACCATGACCCTCT-TCCCCACGCTGACCTGCTTTC-CTTCCCCAATCACCTTTCCTGTTCCAGAAA---TGGGGCTGGGATGTCTCCATCTCTGTCTCAACTTTATGGTGCACTGAGCTATAACTTCTTACTTCCCTAT-T-AAAATTAGAATCTGAGTATAAATTTACTTTTTCAAATTATTTCCAAGAGAGG
i rheMac8.chr4             I 51 C 0
s macFas5.chr4             29842963 207 - 170955103 CAGCCTACCCCCATGTCCACCATGACCCCCT-TCCCCGCACTACCCTGTGTTT-C-TACCCAATTACCTTTCCTGTTCCAGAGACATTGGGGCTCGGATGTCTTTATCTCTGTCTCAACTTCATGGTGTACTGAGCTGCAACTTCCTGCTTCCCTAT-T-AAAATTAGAATCTGAGTATAAATTTACTTCTTTAAATTATTGCCATTAGAGG
i macFas5.chr4             I 51 C 0
s cerAty1.NW_012002711v1     745937 205 +    766320 CAGCCCAACCCCATGTCCACCATGACCCTCT-TCCCCACACTGACCTGCATTC-CTTCCCCAATCACTTTTCCTGTTCCAGAAA---TGGGGCTGGGATGTCTCCATCTCTGTCTGAACTTTATGGTGCACTGAGCTGTACCTTCTTCCTTCCCTAT-T-AAAATTAGAATCTGAGTATAAATTTACTTTTTCAAATGATTTCCAAGAGAGG
i cerAty1.NW_012002711v1   I 51 C 0
s chlSab2.chr17            29228478 205 -  71996105 CAGCCCAACCCCATGTCCACCATGACCCTCT-TCCCCAGGCTGACCTGCATTC-CTTCCCCAATCACCTTTCCTGTTCCAGAAA---TGGGGCTGGGATGTCTCCATCTCTGTCTCAACTTTATGGTGCACTGAGCTATAACTTCTTACTTCCCTAT-T-AAAATTAGAATCTGAGTATAAATTTACTTTTTCAAATTATTTCCAAGAGAGG
i chlSab2.chr17            I 51 C 0
s calJac3.chr4             30201613 206 + 171630274 CAGCCCACCCT-GTGTCCACCGTGACCC-CTGTCCCCACGCTGACCTGTGTTC-CCTCCCCAGTCATCTTTCCTGTTCTAGAGCGG-TGGGGCTGGG-TGTCTCCATCTCTGTCTCAATTTCATGGTGCACTGTGCTGCAACCGCCTACTTCCCTATGG-AAAATAAAAATCTGAATATAAATGTGTTTTCTCAAATATTTTCCATGAGAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341            17155 205 +    515838 CAGCCCAGCCTCATGTCCACCATGACCT-AT-TCCTCATGCTGACCTGCATTC-CTTACCCGGTCACCTTTCCTATTCCAGAGACC-TGGGGCTGGGATGTCTCTATCACTGTCTCAACTTCATGGTGCACTCAGTTGTAACTTCTTACTTTCCTGT-T-AACATTAGAATCTGAGTAT-AGTTTACCTTTTCAAATTATTTCCATGAGAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     397223 204 -   1771730 CAGCCCAGCCCCGCGTCCACCATGACCC-CT-TCCCCACACTGACCTGCATTC-CTTCCCCGATCACCTTTCCTGTTC-AGAGACC-TGGGGCTGTGATGTCTCCATTTGTGTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTACTTTCCTAC-T-AAAATTAGAATCTGAATAT-AATTTACTTCTTCAAATTATTTCTATGAGAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     151804 204 -    383796 CAGCCCAGCCCTGTGTCCACTATGACCC-CT-TCCCCATGCTGACCTGCATTC-CTTCCCC-ATCACCTTTCCTGTTCCAGAGACC-TGGGGCTGGGATGTCTCCATCTCTGTCTCAACTTCATGGTGCAGTGAGCTGTAACTTCTTACTTTCTTAT-T-AACATTAGAATCTGAGTAT-AGTTTACTTTTTTAAATTATTTCCATGAGAGG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16989501 196 -  18854210 CAATATACCACCAGGTCCCCTGTGACCC-TT-CTCCTGCACTGACCTGTGTCC-CTT-TCTGATTATCTTTCCTGTTTCAGAGAGG-TAGGGGAGGGATGTTTCCCTCCTTGTCTCAACTTCATGGTGCACTGAGCTG----------CTTCCCtat-taaaaataagaatttgaatataaatttattttCTCAAATTCTTCCCATGACAGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              986753 199 +  72498081 TGGCCCACCC---TGCCCACCATGACCT--G-TCCCTAATCTGATGTGCGCTCTCTTCTCTGATGTGCTTTCCTGTCCAGGAGAGG-GAGGGCTGGACCATCTCCATCCCTGTCTTTGTTTCATG-----TTGAGTACTAATGACTTACTACCCGAT-TGAAAATAAGAATCCCGATATGAGTTTGTGTTTCCTGAGTCTTGGGATGTGGGG
i canFam3.chr12            C 0 C 0
e colAng1.NW_012115566v1    2953308 1139 -   3067355 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=152136.000000
s hg38.chr6_GL000254v2_alt  1093522 21 +   4827813 TTGATGGGTTAATTAAAGGAG
s panTro5.chr6             30059177 21 + 175400573 TTGATGGGTTAATTAAAGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30289822 21 + 173848474 TTGATGGGTTAATTAAAGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098233 21 +   6154872 TTGATGGGTTAATTAAAGGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30392990 21 + 172585720 TTGATGGGTTAATTAAAGGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29843170 21 - 170955103 TTGATGAGTTAATTAGAGGAG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     746142 21 +    766320 TTGATGGGTTAATTAAAGGAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29228683 21 -  71996105 TTGATGGGTTAATTAAAGGAG
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30201819 21 + 171630274 TTGATGGGTTAATTAAATAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341            17360 21 +    515838 TTGATGGGTTAATTAAAGGAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     397427 21 -   1771730 TTGATGGGTTAATTAAAAGAG
i cebCap1.NW_016107755v1   C 0 I 306
s aotNan1.NW_018496904v1     152008 21 -    383796 TTGATGAGTTAATTAAAGGAG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               240008 21 + 123392446 TTGATGGGTTAATTAAAGGAG
i micMur3.chr6             N 0 I 2
s canFam3.chr12              986952 19 +  72498081 CTGATGAGGTAATAAAAGG--
i canFam3.chr12            C 0 C 0
e otoGar3.GL873550         16989697  0 -  18854210 C
e colAng1.NW_012115566v1    2953308 1139 -   3067355 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=500426.000000
s hg38.chr6_GL000254v2_alt  1093543 77 +   4827813 AAGATTCCTGAAATTTGAGAGACAAAATAAATGGAAGACATGAGAACTTTCCACAGTACACGTGTTTCTTGTGCTGA
s panTro5.chr6             30059198 77 + 175400573 AAGATTCCTGAAATTTGAGAGACAAAATAAATGGAAGACATGAGAACTTTCCACAGTACACGTGTTTCTTGTGCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30289843 77 + 173848474 AAGATTCCTGAAATTTGAGAGACAAAATAAATGGAAGACATGAGAACTTTCCACAGTACACGTGTTTCTTGTGCTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098254 77 +   6154872 AAGATTCCTGAAATTTGAGAGACAAAATAAATGGAAGACATGAGAACTTTCCACAGTACACGTGTTTCTTGTGCTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30393011 77 + 172585720 AAGATTCCTGAAATTTGAGAGACAAAATAAATGGAAGACATGAGAACGTTCCACGGTACACGTGTTTCTTGTGCTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29843191 75 - 170955103 GAGATTACTAACATTTGAGAGACAAAATAAATGGAAGACCTGAGAACCTTCCAGAGTCTA--TGTTTCCTGTGCTGA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     746163 77 +    766320 AAGATTCCTGAAATTTGAGAGACAAAATAAATGGAAGACATGAGAACCTTCCACGGTACACGTGTTTCTTGTGCTGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29228704 77 -  71996105 AAGTTTCCTGAAATTTGAGAGACAAAATAAATGGAAGACATGAGAACCTTCCACGGTACACGTGTTTCTTGTGCTGA
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30201840 72 + 171630274 TCAATTCCTAAAATTTGAGAGAGGAAATA-----AAGACCCGAGAACCTTCCAGAATCCACATGTTTTCTGTGCTGA
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341            17381 77 +    515838 AAGATTCCTGAAATTTGAGACACAAAATAAATGGAAGACCCAAGAATCTTCCACAGTCCACGTGTTTCTTGTGCTGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     397754 77 -   1771730 aaGAGTCCTGAAATTCGAGAGACAAAATAAATGCAAGACCTGAGAACCTTTCACAGTCCACGTGTTTCTTGTGCTGA
i cebCap1.NW_016107755v1   I 306 C 0
s aotNan1.NW_018496904v1     152029 77 -    383796 AAGATTCCTGAAATTTGAGTCGCAAAATAAACGAAACACCCAAGAATCTTCCACAGTACATGTGTTTCTTGTACTAA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               240031 77 + 123392446 AAGATTCTTAAAAGGGGAGAGAGGAAACAAATAGAAGACCTGAGAACTTTCCAGAATCCACGTGTTTGTTGTGCTGA
i micMur3.chr6             I 2 I 119
s otoGar3.GL873550         16989697 64 -  18854210 -------------GGCAAAAGGGGAAATAAAAGGAAGACCTTAGAACTTTCCAGAATCTGTGTGTTTGCTGTACTGA
i otoGar3.GL873550         C 0 I 1
s canFam3.chr12              986971 75 +  72498081 -AGATTTGTGAAGTT-GAGAGAGCAAATAAATGGAAGCCCTGAGAACCTTCCAGAACTCTCATGTTTGCTGTGTTGA
i canFam3.chr12            C 0 I 1
e colAng1.NW_012115566v1    2953308 1139 -   3067355 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=556375.000000
s hg38.chr6_GL000254v2_alt  1093620 104 +   4827813 TTTGTTGCA---GGAGAGG---------------------AGAGTAGATGGGG-CTGCGCCCAGTGGG----------------TGCTCAGGCCACCATGAACTTTATGTGGTCA-CTGCTCAGCTGGGTCATCTTTGCTGCTCCA
s panTro5.chr6             30059275 104 + 175400573 TTTGTTGCA---GGAGAGG---------------------AGAGTAGATGGGG-CTGTGCCCAGTGGG----------------TGCTCAGGCCACCATGAACTTTATGTGGTCA-CTGCTCAGCTGGGTCATCTTTGCTGCTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30289920 104 + 173848474 TTTGTTGCA---GGAGAGG---------------------AGAGTAGATGGGG-CTGTGCCCAGTGGG----------------TGCTCAGGCCACCATGAACTTTATGTGGTCA-CTGCTCAGCTGGGTCATCTTTGCTGCTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098331 105 +   6154872 TTTGTTGCA---GGAGAGG---------------------AGAGTAGATGGGG-CTGCGCCCAGTGGG----------------TGCTCAGGCCACCATGAACTTTATGTGGTCAGCTGCTCAGCTGGGTCATCTTTGCTGCTCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30393088 104 + 172585720 TTTGTTGCA---GAGGAGG---------------------AGACTAGATGGGG-CTGTGCACAGTGGG----------------TGCTCAGGCCACCATGAACTTTATGTGGTCA-CTGCTCAGCTGGGTCACCATTGCTGCTCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29843266 104 - 170955103 TCTGTTGCA---GGACAGG---------------------AGAGTAGATGGGG-CTGTGCCCCGTGGG----------------TACTCAGGCCACTGTGAGCTTTATCTGGTCA-CTGCTCAGCCAGGTCATCTTTGTTGCTCTA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     746240 104 +    766320 TTTGTTGCA---GAGGAGG---------------------AGACTAGATGGGG-CTGTGCACAGTGGG----------------TGCTTAGGCCACCATGAACTTTATGTGGTCA-CTGCTCAGCTGGGTCATCTTTGCTGCTCCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29228781 104 -  71996105 TTTGTTGCA---GAGGAGG---------------------AGACTAGATGGGG-CTGTGCACAGTGGG----------------TGCTCAGGCCACCATGAACTTTATGTGGTCA-CTGCTCAGCTGGGTCATCTTTGCTGCTCCA
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30201913 122 + 171630274 TCTGTTGCAGGTGGGGATG----------------------GAGAAGGCTGTG-AGGAGCCGAGTGTGGACGGGGCCTGTGCCCTGCTGAGTCCATCATGGGCTTTATGTGGTCA-GTCCTCAGCTGGGTCAGCTTTACTGCTCCA
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341            17458 103 +    515838 TTTGTTGCA---GGGGAGG----------------------GAGTAGATGGAG-CTGTGCCCAGTGGG----------------TGCTCAGGCCACTGTGGGCTTTATGTGGTCA-CTGCTTGGCTGGGTCATCATTGCTGCTCCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     397831 102 -   1771730 TTTGTTGCA---GGGGAGG----------------------GAGTAGATGGGG-ATGTGCCCAGTGGG----------------TGCTCAGGCCACTGTGGGATTTATGTGGTCA-CTGCTTGGTT-TGTCATCTTTGCTGCTCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     152106 103 -    383796 TTTCTTGCA---GGGGATG----------------------GAGTAGATGGGG-CTGTGCCCAGTGTG----------------TATGCAGGCCACTGTGGGCTTTATGTGATCA-CTGCTTGGCTGGGTCATCTTTGCTGCTCCA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16989762 117 -  18854210 TCTTTTGCA---GGTGGGG----AAAGG-----GGAGCCGAGTGTGGATGGGACCTATGCCTAGTTGG----------------TGCTCAGTCTATCATAGGCTTTATGTGGTCA-CTTTTTAGCAGGGCCATCTTCATGACTCCA
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12              987047 116 +  72498081 TCTGTTGAA---GTTGGGGGCTGAAAGGTGTCAGGAGCCGAGGGGGGATGGGGCCTGTGCCCAGTAGG----------------TGCTCAGTGCATCCTGGG-----TGTG-----CCCCTCAGCTGGGTCATCTCT-CTGCTCCG
i canFam3.chr12            I 1 C 0
e micMur3.chr6               240108 119 + 123392446 I
e colAng1.NW_012115566v1    2953308 1139 -   3067355 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=14751.000000
s hg38.chr6_GL000254v2_alt  1093724 2 +   4827813 TT
s panTro5.chr6             30059379 2 + 175400573 TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290024 2 + 173848474 TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098436 2 +   6154872 TT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30393192 2 + 172585720 TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29843370 2 - 170955103 GT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     746344 2 +    766320 TT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29228885 2 -  71996105 TT
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30202035 2 + 171630274 TT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341            17561 2 +    515838 TT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     397933 2 -   1771730 TT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     152209 2 -    383796 TT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               240227 2 + 123392446 TT
i micMur3.chr6             I 119 C 0
s otoGar3.GL873550         16989879 2 -  18854210 TT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              987163 1 +  72498081 -T
i canFam3.chr12            C 0 I 936
e colAng1.NW_012115566v1    2953308 1139 -   3067355 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=324507.000000
s hg38.chr6_GL000254v2_alt  1093726 47 +   4827813 GTCCTTGGCCCTTCAGTAGAACCTTG----TCCCACCAGGACCTGTGATCA
s panTro5.chr6             30059381 47 + 175400573 GTCCTTGGCCCTTCAGTAGAACCTTG----TCCCACCAGGACCTGTGATCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290026 47 + 173848474 GTCCTTGGCCCTTCAGTAGAACCTTG----TCCCACCAGGACCTGTGATCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098438 46 +   6154872 GTCCTTGGCCCTTCAGTAGAACCTTG----T-CCACAAGGACCTGTGATCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30393194 47 + 172585720 GTCCTTGGCCCTTCAGTAGAACTTTG----TCCCACCGGGACCTGTGATCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29843372 47 - 170955103 GGCCTTGGTCCTACAGCAGAACCTTT----TCCCAGCAGGACCTGCGATCT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     746346 47 +    766320 GTCCTTGGCCCTTCAGTAGCACCTTG----TCCCACCAGGACCTGTGATCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29228887 47 -  71996105 GTCCTTGGCCCTTCAGTAGAACCTTG----TCCCACCAGGACCTGTGATCA
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30202037 46 + 171630274 GTCCTTGTTCCTTCAGTGGAAACTGG----TCCCACTG-GAGCTGTGACCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341            17563 47 +    515838 GTCCTTGATCCTTCAATAGAGCCTTG----TCTTACCACGACCTGTGATTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     397935 51 -   1771730 GTCCTTAGCCCTTCAGTAGACCCTTGCTTTTCCCACCCAAATCTGTGATCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     152211 47 -    383796 TTCCTTGATCCTTCAATAGAACCTTG----TCTTACCATGACCTGTGATCA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               240229 47 + 123392446 GTCCTTGTCCCATCAGTAGAGCCTTG----TCCCATGAGGAACTGTGATCA
i micMur3.chr6             C 0 I 484
s otoGar3.GL873550         16989881 47 -  18854210 GTCCTTGTCCCTTCAGTAGAAGCTTG----TCTTAGCAGGATCTGTGATCA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              988100 47 +  72498081 GTCCTTGCCCCTTCTATAGAAGCTTG----TCTCACCAGGACCTGTGATCA
i canFam3.chr12            I 936 C 0
e colAng1.NW_012115566v1    2953308 1139 -   3067355 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=17381.000000
s hg38.chr6_GL000254v2_alt  1093773 2 +   4827813 CA
s panTro5.chr6             30059428 2 + 175400573 CA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290073 2 + 173848474 CA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098484 2 +   6154872 CA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30393241 2 + 172585720 CA
i rheMac8.chr4             C 0 I 448
s macFas5.chr4             29843419 2 - 170955103 CA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     746393 2 +    766320 CA
i cerAty1.NW_012002711v1   C 0 I 496
s chlSab2.chr17            29228934 2 -  71996105 CA
i chlSab2.chr17            C 0 I 449
s calJac3.chr4             30202083 2 + 171630274 CA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341            17610 2 +    515838 CA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     397986 2 -   1771730 CA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     152258 2 -    383796 CA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16989928 2 -  18854210 CA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              988147 2 +  72498081 CA
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240276 484 + 123392446 I
e colAng1.NW_012115566v1    2953308 1139 -   3067355 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=-3114.000000
s hg38.chr6_GL000254v2_alt  1093775 2 +   4827813 TA-
s panTro5.chr6             30059430 2 + 175400573 TA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290075 2 + 173848474 TA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098486 2 +   6154872 TA-
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29843421 1 - 170955103 -G-
i macFas5.chr4             C 0 I 1
s calJac3.chr4             30202085 1 + 171630274 -G-
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341            17612 1 +    515838 -G-
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     397988 1 -   1771730 -G-
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496904v1     152260 1 -    383796 -A-
i aotNan1.NW_018496904v1   C 0 I 1
s otoGar3.GL873550         16989930 1 -  18854210 -G-
i otoGar3.GL873550         C 0 I 1
s canFam3.chr12              988149 2 +  72498081 -GG
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240276 484 + 123392446 I
e colAng1.NW_012115566v1    2953308 1139 -   3067355 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e chlSab2.chr17            29228936 449 -  71996105 I
e cerAty1.NW_012002711v1     746395 496 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e rheMac8.chr4             30393243 448 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=189697.000000
s hg38.chr6_GL000254v2_alt  1093777 46 +   4827813 GACTTGGATATCACCT------AGGGTGGTCCCTACACGTAGAAGTTCCTGT
s panTro5.chr6             30059432 46 + 175400573 GACTTGGATATCACCT------AGGGTGGTCCCTAGACGTAGAAGTTCCTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290077 46 + 173848474 GACTTGGATATCACCT------AGGGTGGTCCCTACACGTAGAAGTTCCTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098488 46 +   6154872 GACTTGGATATCACCT------AGGGTGGTCCCTACACGTAGAAGTTCCTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30393691 46 + 172585720 GACTTGGATATCACCT------AGGGTGGCCCCTACACATAGAAGTTCCTGT
i rheMac8.chr4             I 448 C 0
s macFas5.chr4             29843423 46 - 170955103 GACTCAAATGTTATTT------AGGGCAGTCCCTGCACACAGAAGTCCTTGT
i macFas5.chr4             I 1 C 0
s chlSab2.chr17            29229385 46 -  71996105 GACTTGGATATCACCC------AGGGTGGCCCCTACACATAGAAGTTCCTGT
i chlSab2.chr17            I 449 C 0
s calJac3.chr4             30202087 46 + 171630274 GGCTCACACATTGAGC------AGGGTGGCCCCTAAACACGGGAGTCTCTGC
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341            17614 46 +    515838 GACTTGGATGTCGCCG------AGTGTGGGTCCTACACATAGACGCCCTTGT
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     397990 46 -   1771730 GACTTGGATGTCACCT------ATGGTGGTCTCTACACATAAAAGTCCTTGT
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496904v1     152262 46 -    383796 GACTTGGATGTCACCT------AGTGTGGTCCCTACACATAGAAGCCCTCGT
i aotNan1.NW_018496904v1   I 1 C 0
s otoGar3.GL873550         16989932 46 -  18854210 GGCTGACCTGTGGCTC------AGGGTGGGTCCTGCGCACAGGAGTCTCTGT
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12              988151 50 +  72498081 GACTTGGACGTCACCTGTCACCAGGAC--CTTCTGTAGCCAGAGCTTCCTGA
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240276 484 + 123392446 I
e colAng1.NW_012115566v1    2953308 1139 -   3067355 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e cerAty1.NW_012002711v1     746395 496 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=76053.000000
s hg38.chr6_GL000254v2_alt  1093823 24 +   4827813 ------GTTATCAGAAG--AAAAATTTTCAGA
s panTro5.chr6             30059478 24 + 175400573 ------GTTATCAGAAG--AAAAATTTTCAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290123 24 + 173848474 ------GTTATCAGAAG--AAAAATTTTCAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098534 24 +   6154872 ------GTTATCAGAAG--AAAAATTTTCAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30393737 26 + 172585720 ------GTTATCAGAAGAAAAAAATTTTCAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29843469 25 - 170955103 ------GGTATCAAGAG-ACTGATTTTTCAGA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     746891 24 +    766320 ------GTTATCAGAAG--AAAAATTTTCAGA
i cerAty1.NW_012002711v1   I 496 I 1045
s chlSab2.chr17            29229431 24 -  71996105 ------GTTATCAGAAG--AAAAATTTTCAGA
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30202133 22 + 171630274 ------ATTTCTG--AG--ACAAATTTTCAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341            17660 24 +    515838 ------GGTATCAACAG--ACAAATTTTCAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     398036 24 -   1771730 ------GGTATCAGGAG--ACACATTTTCAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     152308 24 -    383796 ------GGTATCAAGAG--ACAAATTTTCAGA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16989978 23 -  18854210 ------GATACCAAGAC--A-GAATTTTTATA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              988201 12 +  72498081 GACTGGGTCAGC--------------------
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240276 484 + 123392446 I
e colAng1.NW_012115566v1    2953308 1139 -   3067355 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=111031.000000
s hg38.chr6_GL000254v2_alt  1093847 28 +   4827813 CCCCTACACCTCTTCCCCTCCTTCCAGG
s panTro5.chr6             30059502 28 + 175400573 CCCCTACACCTCTTCCCCTCCTTCCAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290147 28 + 173848474 CCCCTACACCTCTTCCCCTCCTTCCAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098558 28 +   6154872 CCCCTACACCTCTTCCCCTCCTTCCAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30393763 28 + 172585720 CCCCTATACCTCTTCCCCTCCTTCCAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29843494 28 - 170955103 CCTGTCCAGCACTTGCCCTCCTTCCAGG
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29229455 28 -  71996105 CCCCTATACCTCTTCCCCTCTTTCCAGG
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30202155 28 + 171630274 CCCATTCACCTCCTGCCATCCTTCTAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341            17684 28 +    515838 CCCCTGTGCCTCTTGCCCTTTTTCCATG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     398060 28 -   1771730 CCCCTGTCCCTCTTGCCCTCCTTCCAAG
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496904v1     152332 28 -    383796 CCCCTGTACCTCTTGCCCTGCTTCCATG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16990001 28 -  18854210 TTTATGTAGCTCTTGTCCTCTTTCTAGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              988213 14 +  72498081 CTGCTAGAC--------------TCAGG
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240276 484 + 123392446 I
e colAng1.NW_012115566v1    2953308 1139 -   3067355 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=29640.000000
s hg38.chr6_GL000254v2_alt  1093875 8 +   4827813 TCTCTTTC
s panTro5.chr6             30059530 8 + 175400573 TCTCTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290175 8 + 173848474 TCTCTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098586 8 +   6154872 TCTCTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30393791 8 + 172585720 TCTCTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29843522 7 - 170955103 -CTCTTTC
i macFas5.chr4             C 0 I 3
s chlSab2.chr17            29229483 8 -  71996105 TCTCTTTC
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341            17712 8 +    515838 TCTCTTTT
i saiBol1.JH378341         C 0 I 3
s cebCap1.NW_016107755v1     398089 7 -   1771730 TCCCTTC-
i cebCap1.NW_016107755v1   I 1 I 64
s aotNan1.NW_018496904v1     152360 8 -    383796 TCTCTTTC
i aotNan1.NW_018496904v1   C 0 I 1473
s otoGar3.GL873550         16990029 8 -  18854210 GCTCTTTC
i otoGar3.GL873550         C 0 I 3
s canFam3.chr12              988227 8 +  72498081 TCTGGGTC
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240276 484 + 123392446 I
e calJac3.chr4             30202183 0 + 171630274 C
e colAng1.NW_012115566v1    2953308 1139 -   3067355 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=20688.000000
s hg38.chr6_GL000254v2_alt  1093883 10 +   4827813 AATTGTATTT--
s panTro5.chr6             30059538 10 + 175400573 AATTGTATTT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290183 10 + 173848474 AATTGTATTT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098594 10 +   6154872 AATTGTATTT--
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30393799 10 + 172585720 AATTGTATTT--
i rheMac8.chr4             C 0 I 41
s macFas5.chr4             29843532 10 - 170955103 GATTGTATTT--
i macFas5.chr4             I 3 C 0
s chlSab2.chr17            29229491 10 -  71996105 AATTGTATTT--
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341            17723 10 +    515838 GATTATATTT--
i saiBol1.JH378341         I 3 C 0
s otoGar3.GL873550         16990040 10 -  18854210 GATGTCATTT--
i otoGar3.GL873550         I 3 C 0
s canFam3.chr12              988235 11 +  72498081 -ACAGCATAGCC
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240276 484 + 123392446 I
e aotNan1.NW_018496904v1     152368 1473 -    383796 I
e cebCap1.NW_016107755v1     398096 64 -   1771730 I
e calJac3.chr4             30202183  0 + 171630274 C
e colAng1.NW_012115566v1    2953308 1139 -   3067355 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=11930.000000
s hg38.chr6_GL000254v2_alt  1093893 4 +   4827813 TCCA
s panTro5.chr6             30059548 4 + 175400573 TCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290193 4 + 173848474 TCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098604 4 +   6154872 TCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29843542 4 - 170955103 TCCA
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29229501 3 -  71996105 -CCA
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341            17733 4 +    515838 TCCA
i saiBol1.JH378341         C 0 I 3
s otoGar3.GL873550         16990050 4 -  18854210 TCCA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              988246 4 +  72498081 CCCA
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240276 484 + 123392446 I
e aotNan1.NW_018496904v1     152368 1473 -    383796 I
e cebCap1.NW_016107755v1     398096 64 -   1771730 I
e calJac3.chr4             30202183 0 + 171630274 C
e colAng1.NW_012115566v1    2953308 1139 -   3067355 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e rheMac8.chr4             30393809 41 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=791.000000
s hg38.chr6_GL000254v2_alt  1093897 4 +   4827813 --TCtt
s panTro5.chr6             30059552 2 + 175400573 --TC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290197 2 + 173848474 --TC--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098608 2 +   6154872 --TC--
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29843546 2 - 170955103 --TC--
i macFas5.chr4             C 0 I 2
s chlSab2.chr17            29229504 2 -  71996105 --TC--
i chlSab2.chr17            C 0 I 25
s otoGar3.GL873550         16990054 2 -  18854210 --TC--
i otoGar3.GL873550         C 0 I 11
s canFam3.chr12              988250 4 +  72498081 tttt--
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240276 484 + 123392446 I
e saiBol1.JH378341            17737 3 +    515838 I
e aotNan1.NW_018496904v1     152368 1473 -    383796 I
e cebCap1.NW_016107755v1     398096 64 -   1771730 I
e calJac3.chr4             30202183 0 + 171630274 C
e colAng1.NW_012115566v1    2953308 1139 -   3067355 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e rheMac8.chr4             30393809 41 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=5466.000000
s hg38.chr6_GL000254v2_alt  1093901 24 +   4827813 tttttttttttttttttttttttt
s panTro5.chr6             30059554  8 + 175400573 ----------------tttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290199  2 + 173848474 ----------------------tt
i panPan2.chr6             C 0 C 0
s chlSab2.chr17            29229531 24 -  71996105 tttttttttttttttttttttttt
i chlSab2.chr17            I 25 C 0
s otoGar3.GL873550         16990067 24 -  18854210 Cttttattattttatttttaattt
i otoGar3.GL873550         I 11 I 131
s canFam3.chr12              988254 24 +  72498081 gtttcttcctttttttctttcttt
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240276 484 + 123392446 I
e saiBol1.JH378341            17737  3 +    515838 I
e aotNan1.NW_018496904v1     152368 1473 -    383796 I
e cebCap1.NW_016107755v1     398096 64 -   1771730 I
e calJac3.chr4             30202183  0 + 171630274 C
e colAng1.NW_012115566v1    2953308 1139 -   3067355 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29843548  2 - 170955103 I
e rheMac8.chr4             30393809 41 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e gorGor5.CYUI01015250v1    6098610  0 +   6154872 C

a score=9181.000000
s hg38.chr6_GL000254v2_alt  1093925 8 +   4827813 tttttttt
s panTro5.chr6             30059562 8 + 175400573 tttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290201 8 + 173848474 tttttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098610 1 +   6154872 -------t
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            29229555 8 -  71996105 tttttttt
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550         16990222 8 -  18854210 tttgtttt
i otoGar3.GL873550         I 131 I 79
s canFam3.chr12              988278 8 +  72498081 tttttttt
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240276 484 + 123392446 I
e saiBol1.JH378341            17737 3 +    515838 I
e aotNan1.NW_018496904v1     152368 1473 -    383796 I
e cebCap1.NW_016107755v1     398096 64 -   1771730 I
e calJac3.chr4             30202183 0 + 171630274 C
e colAng1.NW_012115566v1    2953308 1139 -   3067355 I
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29843548 2 - 170955103 I
e rheMac8.chr4             30393809 41 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=19544.000000
s hg38.chr6_GL000254v2_alt  1093933 10 +   4827813 tttttttttt
s panTro5.chr6             30059570 10 + 175400573 tttttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290209 10 + 173848474 tttttttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098611 10 +   6154872 tttttttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            29229563 10 -  71996105 tttttttttt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2954447 10 -   3067355 ttttttcttt
i colAng1.NW_012115566v1   I 1139 C 0
s otoGar3.GL873550         16990309  9 -  18854210 ttttttttg-
i otoGar3.GL873550         I 79 C 0
s canFam3.chr12              988286 10 +  72498081 tttttttttt
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240276 484 + 123392446 I
e saiBol1.JH378341            17737  3 +    515838 I
e aotNan1.NW_018496904v1     152368 1473 -    383796 I
e cebCap1.NW_016107755v1     398096 64 -   1771730 I
e calJac3.chr4             30202183  0 + 171630274 C
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29843548  2 - 170955103 I
e rheMac8.chr4             30393809 41 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=25570.000000
s hg38.chr6_GL000254v2_alt  1093943 13 +   4827813 gagatg--------gagtctc
s panTro5.chr6             30059580 13 + 175400573 gagatg--------gagtctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290219 13 + 173848474 gagatg--------gagtctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098621 13 +   6154872 gagatg--------gagtctt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30393850 13 + 172585720 gagact--------gagtctc
i rheMac8.chr4             I 41 C 0
s chlSab2.chr17            29229573 13 -  71996105 gagact--------gagtctt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2954457 13 -   3067355 gagact--------gagtctc
i colAng1.NW_012115566v1   C 0 C 0
s otoGar3.GL873550         16990318 13 -  18854210 gtgaca--------gggtctc
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              988296 21 +  72498081 GAGTTGTTCCTCTAGAGCCTC
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240276 484 + 123392446 I
e saiBol1.JH378341            17737  3 +    515838 I
e aotNan1.NW_018496904v1     152368 1473 -    383796 I
e cebCap1.NW_016107755v1     398096 64 -   1771730 I
e calJac3.chr4             30202183  0 + 171630274 C
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29843548  2 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=455381.000000
s hg38.chr6_GL000254v2_alt  1093956 195 +   4827813 ------actc--------aggctggagtgcagtggtgcaatctcaactcattgcaacct--ccacctcccgggtt-------caagcaattctcctgtctcagcctccctagtaactgggagtacaggcacatgccacaatacccagctaattttttgta---tttttagtaaagacgggatttcaccatgttagccaggatggtcttgatctcctgacct
s panTro5.chr6             30059593 195 + 175400573 ------actc--------aggctggagtgcagtggtgcagtctcgactcattgcaacct--ccacctcccgggtt-------caagcaattctcctgtctcagcctccctagtaactgggagtacaggcacatgccacaatacccagctaattttttgta---tttttagtaaagacgggatttcaccatgttagccaggatggtcttgatctcccgacct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290232 195 + 173848474 ------actc--------aggctggagtgcagtggtgcaatctcgactcattgcaacct--ccacctcccgggtt-------caagcaattctcctgtctcagcctccctagtaactgggagtacaggcacatgccacaatacccagctaattttttgta---tttttagtaaagacgggatttcaccatgttagccaggatggtcttgatctcctgacct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098634 194 +   6154872 ------actc--------cggctggagtgcagtggtgcaatctcgactcattgcaacct--ccacctcccgggtt-------caagcaattctcctgtctcagcctccctagtaactgggagtacaggcacatgccacaatacccagctaa-tttttgta---tttttagtaaagacggtatttcaccatgttagccaggatggtcttgatctcctgacct
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30393863 195 + 172585720 ------actc--------aggctggagtgcagtggcaccatctcggctcactgcaacct--ccacctcccgggtt-------caagtgattctcctgtctcagtctccctagtaactgggactgcagatacgtgccacaacgcccaacttattttttgta---tttttagtagagatggaatttcaccatattagacaggatggtcttgatctcctgacct
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29229586 195 -  71996105 ------actc--------aggctggagtgcagtggcgccatctcagctcactgcaacct--ccacctcccgggtt-------caagtgattctcctgtctcagtctccctagtaactgggactacagatacgtgccacaacacccagcttattttttgta---tttttagtagagatggaatttcaccatattagacaggatggtcttgatctcctgacct
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2954470 195 -   3067355 ------actc--------aggctggagtgcagtggcgccatcttggctcactgcaacct--ccaccttctgggtt-------caagtgattctcctgcctcagtctccctagtaactgggactacaggtacgtaccacaacccccagcttattttttgta---tttttagtagagatggaatttcaccatattagacaggatggtcttgatctcctgacct
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     398160 192 -   1771730 ------accc--------aggctggagtgcaatggcgcgatctcggctcaccgcaacct--ctgtcttctgggtt-------caaggaattctcctgcctcagcctcccgagtagctgggacaacaggcatgtgccaccatgcccagctaa---cttgaa---tttttagtagagacagggttacaccatgttgaccaggatggtctcgatctcttgacct
i cebCap1.NW_016107755v1   I 64 C 0
s otoGar3.GL873550         16990331 201 -  18854210 ------actttgttgcaggggctagagtgcagtggcatcatcatagctcactgcaacct--caaactcctgcact-------caaacatgcttcttgcctcactct-ctgagtagct-taattacaaatgc-tgacaccagacccagctaattttttaaaaacttgtttgtagagatggagccttac--tactgcccaggctggtcttgaactcatggcct
i otoGar3.GL873550         C 0 I 311
s canFam3.chr12              988317 160 +  72498081 ATGCCTGCTC--------TTGCTCTTGTGTCCAAGT----TCCTGTCCCATTGTCCCCTGGTGACCCCATTGGTTACAGCAGCAGGTGTCCTTTGGGCTCCCGTCTCCACAG-----------------------------GCCTAGGTCGTCCCCTGCA---C-----------ACAGGAGTCCCCGAGGTTTGGAGAGATGAACT-----TCCAGATC-
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240276 484 + 123392446 I
e saiBol1.JH378341            17737   3 +    515838 I
e aotNan1.NW_018496904v1     152368 1473 -    383796 I
e calJac3.chr4             30202183   0 + 171630274 C
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29843548   2 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=144062.000000
s hg38.chr6_GL000254v2_alt  1094151 64 +   4827813 tgtgatctgcccgcctctgcctcccaaagtgct---gggattacaggtgtaagccaccatgcctggc
s panTro5.chr6             30059788 64 + 175400573 tgtgatctgcccgtctctgcctcccaaagtgct---gggattacaggtgtaagccaccatgcctggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290427 64 + 173848474 tgtgatctgcccgtctctgcctcccaaagtgct---gggattacaggtgtaagccaccatgcctggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098828 64 +   6154872 tgtgatctgcccgcctctgcctcccaaagtgct---gggattacaggtgtaagccaccatgcctggc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30394058 64 + 172585720 tgtgatccgcccacctctgcctcccaaagtgct---gggattacaggcatgagccaccaagcctggc
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29229781 64 -  71996105 tgtgatccgcccacctctgcctcccaaagtgct---gggattacaggcatgagccaccaagcctggc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2954665 64 -   3067355 tgtgatccgcccacctctgcctcccaaagtgct---gggattacaggcatgagccaccaagcctggc
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     398352 64 -   1771730 tgtgatccacacgcctaggcctcccaaagtgct---gggattataggcgtgagccaccgcgcccggc
i cebCap1.NW_016107755v1   C 0 I 1
s canFam3.chr12              988477 44 +  72498081 --CATCCAGTCTCCCCCTCCCTCCGCAGCTGCTTTCTGGATTATTG---------------------
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240276 484 + 123392446 I
e saiBol1.JH378341            17737  3 +    515838 I
e otoGar3.GL873550         16990532 311 -  18854210 I
e aotNan1.NW_018496904v1     152368 1473 -    383796 I
e calJac3.chr4             30202183  0 + 171630274 C
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29843548  2 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=14448.000000
s hg38.chr6_GL000254v2_alt  1094215 5 +   4827813 TTCCC
s panTro5.chr6             30059852 5 + 175400573 TTCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290491 5 + 173848474 TTCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098892 5 +   6154872 TTCCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30394122 5 + 172585720 cTCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29843550 5 - 170955103 TTCAC
i macFas5.chr4             I 2 C 0
s chlSab2.chr17            29229845 5 -  71996105 cTCCC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2954729 5 -   3067355 cTCCC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            17740 5 +    515838 TTCCC
i saiBol1.JH378341         I 3 C 0
s cebCap1.NW_016107755v1     398417 5 -   1771730 TTCCC
i cebCap1.NW_016107755v1   I 1 C 0
s canFam3.chr12              988521 4 +  72498081 TTCA-
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240276 484 + 123392446 I
e otoGar3.GL873550         16990532 311 -  18854210 I
e aotNan1.NW_018496904v1     152368 1473 -    383796 I
e calJac3.chr4             30202183 0 + 171630274 C
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=46600.000000
s hg38.chr6_GL000254v2_alt  1094220 15 +   4827813 CAACCTTCTTAAAGG
s panTro5.chr6             30059857 15 + 175400573 CAACCTTCTTAAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290496 15 + 173848474 CAACCTTCTTAAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098897 14 +   6154872 C-ACCTTCTTAAAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30394127 15 + 172585720 CAACATTCTTAAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29843555 15 - 170955103 CAGCCTTCTCATAGG
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29229850 15 -  71996105 CAACATTCTTAAAGG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2954734 15 -   3067355 CAACATTCTTAAAGG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            17745 15 +    515838 CAATCTTTATAAAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     398422 11 -   1771730 CAAACTTCTT----A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     153841 15 -    383796 CAATCTTTTTAAAGA
i aotNan1.NW_018496904v1   I 1473 C 0
s otoGar3.GL873550         16990843 15 -  18854210 CAACCTTTTTAAAGG
i otoGar3.GL873550         I 311 C 0
s canFam3.chr12              988525  7 +  72498081 CATCCTG--------
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240276 484 + 123392446 I
e calJac3.chr4             30202183  0 + 171630274 C
e manLeu1.NW_012101121v1      31121 3920 +    273075 M
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=284692.000000
s hg38.chr6_GL000254v2_alt  1094235 69 +   4827813 AAGCAGATTCTGAAACTTCCCGAGAGGAGAGGTCCCAGAGT-TTTTCATTGTAGTT------TACTTTCTGTTGGA
s panTro5.chr6             30059872 69 + 175400573 AAGCAGATTCTGAAACTTCCCGAGAGGAGAGGTCCCAGAGT-TTTTCATTGTAGTT------TACTTTCTGTTGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290511 69 + 173848474 AAGCAGATTCTGAAACTTCCCGAGAGGAGAGGTCCCAGAGT-TTTTCATTGTAGTT------TACTTTCTGTTGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098911 69 +   6154872 AAGCAGATTCTGAAACTTCCCCAGAGGAGAGGTCCCAGAGT-TTTTCATTGTAGGT------TACTTTCTGTTGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30394142 67 + 172585720 AAGCAGATTCTGAAACTTCC--AGAGGAGAGGTCCCAGAGT-TTTTCATCATAGGT------TATTTTCTGTTGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29843570 69 - 170955103 AACCAGATTGTGACATTTGCAGAGAGGAGGGGTCCCATAAT-TTCTCATCGTAGGT------AAGTTTTTGTTGGA
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29229865 67 -  71996105 AAGCAGATTCTGAAACTTCC--AGAGGAGAGGTCCCAGAGT-TTTTCATCATAGGT------TACTTTCTATTGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      35041 67 +    273075 AAGCAGATTCTGAAACTTCC--AGAGGAGAGGTCCCAGAGT-TTTTCATCATAGGT------TATTTTCTATTGGA
i manLeu1.NW_012101121v1   M 3920 C 0
s colAng1.NW_012115566v1    2954749 69 -   3067355 AAGCAGATTCTGAAACTTCCAGAGAGGAGAGGTCCCAGAGT-TTTTCATCATAGGT------TATTTTCTATTGGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            17760 69 +    515838 AAGCAGATTTGGAAACTTGCAGTGAAGAGGGGTCCCACGGA-TTTTCACCATAGAT------AGCTTTCTGGTGGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     398433 51 -   1771730 AAGCAGAT------ACTTGCAGAGAGGAGGGCTCCTGTAGT-TTCTCATCGTAGGT------AA------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     153856 69 -    383796 AAGCAGATTAGGAAACTTGCAGTGAAGAGGGGTCCCATGGA-TTTTCATCATAGGT------AACTTTCTGTTGGA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16990858 57 -  18854210 AACCAGATTCTGGAATTAGCAGAGAGGAGGGATCCCATCA--TTCTCATCTTCCGT------AAA-----------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              988532 58 +  72498081 AGGTAGA--------------GAGGGGAGAAGTCAGAGGTTCTCCTCCTCATAAGCGTCCAGGAGTTTCTGC----
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240276 484 + 123392446 I
e calJac3.chr4             30202183  0 + 171630274 C
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=376900.000000
s hg38.chr6_GL000254v2_alt  1094304 59 +   4827813 ACTCCTCTTCTGCTCT-CTCTCCTACTCT-TCTTCCTGCCCTGAGTTGTAGTAATCCTATT
s panTro5.chr6             30059941 59 + 175400573 ACTCCTCTTCTGCTCT-CTCTCCTACTCT-TCTTCCTGCCCTGAGTTGTAGTAATCCTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290580 59 + 173848474 ACTCCTCTTCTGCTCT-CTCTCCTACTCT-TCTTCCTGCCCTGAGTTGTAGTAATCCTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6098980 59 +   6154872 ACTCCTCTTCTGCTCT-CTCTCCTACTCT-TCTTCCTGCCCTGAGTTGTAGTAATCCTATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30394209 59 + 172585720 ACTCCTCTTCTGCTCT-CTCTCCTACTCT-TCTTCCTGCCCTGAGTTGTAGTAATCCTAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29843639 55 - 170955103 GCTCCTCTTCTG-----CTCACCTACTAT-TCTTCCTGCCCTGAGTTGTAGTAATCCTAGT
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29229932 59 -  71996105 ACTCCTCTTCTGCTCT-CTCTCCTACTCT-TCTTCCTGCCGTGAGTTGTAGTAATCCTAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      35108 59 +    273075 ACTCCTCTTCTGCTCT-CTCTCCTACTCT-TCTTCCTGCCCTGAGTTGTAGTGATCCTAGT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2954818 59 -   3067355 ACTCCTCTTCTGCTCT-CTCTCCTACTCT-TCTTCGTGCCCTGAGTTGTAGTAATCCTAGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30202183 60 + 171630274 GCTCCTCTTCTGCTCTGCTCTCCTGCCCTCTCTCCCTGCCCTG-GTTCTAGTGATCTTGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341            17829 58 +    515838 ACTCCTCTTCTGCTCT-CTCTCCTACTCT-TCTTCCTGCCTTA-GTTGTAGTAATCCTAGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     398484 50 -   1771730 ---------CTGCTCT-CTCGCCTACTCT-TCCTCCTGCCCTGAGTTGTAGTAATCCTAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     153925 56 -    383796 --ACTCTTTCTGCTCT-CTCTTCTACTCT-TCTTCCTGCCTGA-GTTGTAGTAATCCTAGT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16990915 59 -  18854210 TTTCCTCTTCTGCTCT-GCTCCCCTCCCC-ACTCCCTGCCCTTAGTTCTAGTAGTCTTAGC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              988590 51 +  72498081 -CTCCCCTGCTGCTCT-GCCCTC-------CCTCCCCGCCCTG-GGCCCCGTGATCCCCGT
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240276 484 + 123392446 I
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=268951.000000
s hg38.chr6_GL000254v2_alt  1094363 37 +   4827813 GCTGGCTCCAAACCAAACTCATGGATTTGTAAAGCAG
s panTro5.chr6             30060000 37 + 175400573 GCTGGCTCCAAACCAAACTCATGGATTTGTAAAGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290639 37 + 173848474 GCTGGCTCCAAACCAAACTCATGGATTTGTAAAGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6099039 37 +   6154872 GCTGGCTCCAAACCAAACTCATGGATTTGTAAAGCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30394268 37 + 172585720 GCTGGCTCCAATCCAAACTCATGGATTTGTAAAGCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29843694 37 - 170955103 GCTGGCTCCAATCCAAACTCATGGATTTGTAAAGCAG
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29229991 37 -  71996105 GCTGGCTCCAATCCAAACTCATGGATTTGTAAAGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      35167 37 +    273075 GCTGGCTCCAATCCAAACTCATGGATTTGTAAAGCAC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2954877 37 -   3067355 GCTGGCTCCAATCCAAACTCATGGATTTGTAAAGCAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30202243 37 + 171630274 GCTGCCTCCAATCCCAACTCATGAATCTATAAAGCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341            17887 37 +    515838 GCTGCCTCCCATCCAAATTCATGGATTTATAAAGCAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     398534  9 -   1771730 GCTGCCTCC----------------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     153981 37 -    383796 GCTGCCTCCAATCCAAACTCATGGATTTATAAAGCAG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               240760 37 + 123392446 GCTGGCTCCAATCCCAACTCATGGATTTGTAAAACAG
i micMur3.chr6             I 484 T 2210
s otoGar3.GL873550         16990974 37 -  18854210 ACTGGCTTCATTCCAAACTCATGGATTTCTAAGGTAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              988641 16 +  72498081 ---------------------GGGATTTATAAAGCAG
i canFam3.chr12            C 0 C 0
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=2119794.000000
s hg38.chr6_GL000254v2_alt  1094400 391 +   4827813 AGTC-TAATTTAGATTCATATGTGGTTGGATAATTGGAGCCAT-AAGCCTTGGGTTATCTTTCCTCAAGAGACAAATATGGTTGTGTGCTGCAGTGTGCAG---------------GAGGATTGGTGTgggaggaggcaggga--------gggagggaggACACAAAAGCAGCCCTGGTGAGAAAAGCACTGGT-GCATTTATATCCACATGAGATAATATTGTTCCACAGCG-------------------GCTACAAAATGACATTTGGCCTGAGTCTACATTAATAAAGATATTGCCTTTAGAAT-GGGGGGCGCACTACAGTAAtcatccattcaagtggcatttgttgtctgctaggtatttgac----tgtttttgcatttagaaaacatcgttaaagtaaaaacagaaaaattt-ctggccttgtcgtgtatac
s panTro5.chr6             30060037 388 + 175400573 AGTC-TAATTTAGATTCATATGTGGTTGGATAATTGGAGCCAT-AAGCCTTGGGTTATCATTCCTGAAGAGACAAATATGGTTGTGTGCTGCAGTGTGCAG---------------GAGGATTGGTGTgggagg----aggga--------gggagggaggACACAAAAGCAGCCCTGGTGAGAAAAGCACTGGT-GCATTTATATCCACATGAGATAATATTGTTCCACAGCG-------------------GCTACAAAATGACATTTGGCCTGAGTCTACATTAATAAAGATATTGCCTTTAGAATAGGGGGGTGCACTACAGTAAtcatccattcaagtggcatttgttgtctgctaggtatttgac----tgtttttgcatttagaaaacatcgttaaagtaaaaacagaaaaattt-ctggccttgtggtgtatac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30290676 388 + 173848474 AGTC-TAATTTAGATTCATATGTGGTTGGATAATTGGAGCCAT-AAGCCTTGGGTTATCATTCCTGAAGAGACAAATATGGTTGTGTGCTGCAGTGTGCAG---------------GAGGATTGGTGTgggagg----aggga--------gggagggaggACACAAAAGCAGCCCTGGTGAGAAAAGCACTGGT-GCATTTATATCCACATGAGATAATATTGTTCCACAGCG-------------------GCTACAAAATGACATTTGGCCTGAGTCTACATTAATAAAGATATTGCCTTTAGAATAGGGGGGTGCACTACAGTAAtcatccattcaagtggcatttgttgtctgctaggtatttgac----tgtttttgcatttagaaaacatcgttaaagtaaaaacagaaaaattt-ctggccttgtggtgtatac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6099076 387 +   6154872 AGTC-TAATTTAGATTCATATGTGGTTGGATAATTGGAGCCAT-AAGCCTTGGGTTATCTTTCCTGAAGAGACAAATATGGTTGTGTGCTGCAGTGTGCAG---------------GAGGATTGGTGTGGGAGG----AGGga--------gggagggaggacacaaaagcagccctggtgagaaaagcactggt-gcatttatgtccacatgagataatattgttccacagct-------------------tctacaaaatgacatttggcctgagtctacattaataaagatattgcctttagaat-aggggGCGCACTACAGTGAtcatccattcaagtggcatttgttgtctgctaggtatttgac----tgtttttgcatttagaaaacatcgttaaagtaaaaacagaaaaattt-ctggccttgtggtgtatac
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30394305 388 + 172585720 AGTC-TAATTTAGATTCACATGTGGTTGGAAAATTGGACCCAT-AAGCCTAGGGTTATCTTTCCTGAAGAGAAATATATGTTTGTGTGCTGCAGTGTGCAg---------------gagggttggtgtgggagg----aggga--------gggagggaggACACAAAAGTAGCCCTGGCAAGAAAAGCACTGGT-GCATTTATGtccacatgagataatattgttctgtagct-------------------gctacaaaatgacatttgacctgaggttacattaataaaggtattgcctttagaatagggagatGCTCTACAGTGAtcatccattcaactgacatttgttgtctgctagggatatgac----tgcttttgcatttagaaaacatcattaaagtaaaaacagaaacattt-ctggcattctggtgtatac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29843731 412 - 170955103 AGTCTTAATTTAGATTCATATGTAGTTGAAAAATTGGACTTAT-AAGCCTAAGATTATCTTTCCTGAAGAGAGAAATATGGTTGTGTGCTGCAGTGTGCAG---------------GAGGGTTGGTGTGGGAGG----AGGAA----TGAGGGGAGGGAGGGCACCCAAGCAGCACTGATGACAAAAGCACCGGTGGCACTGATATCAGTGTGAGAGGATGTTGTGCTGTAGCTGCCACAAACAGCTGTAGCAGCCACAAAATAGCATTTGGCTCGAGGCTACATAAATAAAGACATTGCCTTTCGGATAGGGAGGTACTCTACGGTGAGCTTTCATTGAACTGACATTTGTTATCTGCTAGGTATATGGC----TG-TTTTGCATTTGGAAAACATCTTTAAACTAAAAACAGAAGAATTT-CTGGCCTTGTGGCGCATAT
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29230028 388 -  71996105 AGTC-TAATTTAGATTCACATGTGGTTGGATAATTGGACCCAT-TAGCCTAGGGTTATCTTTCCTGAAGAGAAATATATGTTTGTGTGCTGCAGTGTGCAg---------------gagggttggtgtgggagg----aggga--------gggagggaggACACAAAAGTAGCCCTGGCAAGAAAAGCACTGGT-GCATTTATGtccacatgagataatattgttctgtagct-------------------gctacaaaatgacatttgacctgaggttatattaataaaggtattgcctttagaatagggaggtGCTCTACAGTGATGATCCATTCAACTGACATTTGTTGTCTGCTAGGGATATGAC----TGCTTTTGCAATTAGAAAACATCATTAAAGTAAAAACAGAATCATTT-CTGGCCTTGTGGTGTATAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      35204 388 +    273075 AGTC-TAATTTAGATTCACATGTGGTTGGATAATTGGACCCAT-AAGCCTAGGGTTATCTTTCCTGAAGAGAAATATGTGTTTGTGTGCTGCAGTATGCAG---------------GAGGGTTGGTGTGGGAGG----AGGga--------gggagggaggacacaaaagtagccctggcaagaaaagcactggt-gcatttatgtccacatgagataatattgttctgtagct-------------------gctacaaaatgacatttgacctgaggttacattaataaaggtattgcctttagaacagggagatgCTCTACAGTGATCATCTATTCAACTGACATTTGTTGTCTGCTAGGGATATGAC----TGCTTTTGCATTTAGAAAACATCATTAAAGTAAAAACAGAAACATTT-CTGGCCTTGTGGTGTATAC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2954914 388 -   3067355 AGTC-TAATTTAGATTCACATGTGGTTGGATAATTGGACTCAT-AAGCCTAGGGTTATCTTTCCTGAAGAGAAATATATGTTTGTGTGCTGCAGTATGCAg---------------gagggttggtgtgggagg----aggga--------gggagggaggACACAAAAGTAGCCCTGGCAAGAAAAGCACTGGT-GCATTTATAtccacatgagataatattgttctatagct-------------------gctacaaaatgacatttgacctgaggttacattaataaaggcattgcctttagaatagggaggtGCTCTACAGTGAtcatccattcaactgacatttgttttctgctaggtatatgac----tgtttttgcatttagaaaacatcattaaagtaaaaacagaaacattt-ctggccttgtggtgtatac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30202280 394 + 171630274 AGTC-TAATTTAGACTGACATTTGTTTGTGAAATTGGACCCAT-CATCAAGGACTATTCTTTCCTGAAGAAAGAAGACTGATTGTGTGCTGCAGTGTGCAGGGGTGTGTGTGGGTTGGGAGTTGGTGTGGGAGG----AGGGA-----TGAGGGAGGGAGGACACACTAGCAGCCCTGCTGAGAAAAGCACAGGCAGCCTCGATGTCAGTGTGAGGGGCCCTTGTGCTGTAGCT-------------------GCCAAGAAACAGCACTTGGCCTGAGTCTATGTTAATAAGGATACTGCCTTTAGAATAG-GAGATGCTCTACGG----------------TGACCTTCGTTGTCGGCCAGACACAGGACAGAGTGgttctgcatctgcagaacgtcactgaagtaaaatcagaaaaatct-ctaaccttgtggagcatgt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341            17924 397 +    515838 GGTC-TGACTTAGATTCATATGTGGTTAGAAAATTGAAGCCAT-AAGCCTAGGGTTATCTTTCCTGAAGAGTAAAATATGGTTGTGTGCTGCAGCGTGCAG---------------GAGGGTTGGTGTGGGAgg----agagagggagggagggagggagggCACACACGCAGCCCTGGTGAGAAAAGCTCTGGCAGCACTGATGtcagtgtgtgatgacattgctctgtagct-------------------gccacaaaacagcatttggcctgaggctacattaataaagatattgcctttagaataGTGACGTGCCCTGCGGTCAtcattcattcaactgacatttgttgtctgctaggtatatgac----tgtttctgcatttagaaaacatcaataaagttaaaacaaaaataatt-ccagacttccagtgtatat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     398543 378 -   1771730 ------AACTTAGATTCATGTGTGGTTGGAAAATTGGAGCCAT-AAGCCTAGGGTTTTCTTTCCTGAAGAGAAAAATATGGTTGTGTGCTGCAGCGTGCAg---------------gagggttggtgtgggagg----aggga--------gggagggagggCACACACGCAGCCCTGGTGAGAAAAGCTCTGGCAGCACTGATGtcagtgtgagatgatgttgtgctgtagct-------------------gccacaaaacagcatttggcctgaggttacattaataaagatattgcctttagaatagggaggtaCCCTTCAG----TGAtcattcaactgacatttgttgtctgctaggtatatgac----tattttcgcatttagaaaacatcattaaagt--aaccaggaaaattt-ccagccatctggtgtatgt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     154018 391 -    383796 AGTC-TGACTGAGATTCATATGTGGTTGGAGAATTGGACCCAT-AAGCCTAGGGTTATCTTTCCTG-AGAGAAAAATATGGTTGTGCACTGCAGCGTGCAg---------------gagggttggtgtgggagg----aggga----gggagggacagaggACACACACTCAGCCCTGGTGAGAAAAGCTCTGGCAGCACTGATGtcagtgtgagatgatgttgttctgtagct-------------------gccacaaaatagcatttggcctgaggctacattaataaagatattgcctttagaatagggagat-CCTTACAGTGATAATTCATTCAACTGACATTTGTTGTCTGCTACGTTTATGAC----TGTTTCCGCATTTAGAAAACATCATTAAAGTTAAAACAGAAAAGAAT-TCAGACTTCCAGTGCATAT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16991011 251 -  18854210 GCTC-TAAGTTTGATGCACACTTG-TTGCAAAATTGGACCCAT--AGTCAAGGATTGTTCTTTCTGAGGAGAGAAGTGTCACTGTGTGCTGCAGCATGCAG---------------GAGGGTCAGTGTGGAAGG-----GATA--------ATGAGGAAGGGCACATAA-CAGCACTGGGGTGAAAAACCCAGCCAGCACTGATGTAAGTTTGAAG---------------GGT---------------------------------------------------------------------------------------------------------------------TTGTCTGCCAGATATAGGACAGACTGTTTTTGTATCTGGGAAATACTACTGAAGT---AACAGAAACA-----------------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              988657 363 +  72498081 AGTG-TAACGTAGATTTCTCTGTGGCTGGAGAAGAGGACCCAGGAAGCCCAAGTGCAGGGTGCCTGAGGAGTGAACTCTG--TGCGTGGT---GTGTGCAG---------------GAGAAACGGTGTGGGGGT----GGGAG----CTGAGGGAGGGAGG---TGGGGGCAGCCCC-ATGAGGAGAGAGAGGGG-GCACTGATGACCA-GTG-GCTGGTGGGGGGCAGGAGCT-------------------GCCACAGAACAGC--TGTGCCCCAGGC------------------GCTTCTAGAAGAGGGAGACCCTCTTCC-TGCGCATTCATTCAGCTG-TAACTGTCCTGTGTCACATGCAGGACACACTG--TTTGCATCTGGGCAGCTCAGTGAGACTCAGGTGAGGCAAACCTGCTGGTCTCCTGGAGAGTAT
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=40828.000000
s hg38.chr6_GL000254v2_alt  1094791 6 +   4827813 attcta
s panTro5.chr6             30060425 6 + 175400573 attcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30291064 6 + 173848474 attcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6099463 6 +   6154872 attcta
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30394693 6 + 172585720 gttcta
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29230416 6 -  71996105 GTTCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      35592 6 +    273075 GTTCTA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2955302 6 -   3067355 gttcta
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30202674 6 + 171630274 gttcca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341            18321 6 +    515838 gttcta
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     398921 6 -   1771730 gttcta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     154409 6 -    383796 GTTCTA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16991262 6 -  18854210 ATTGTA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              989020 6 +  72498081 GTTCTA
i canFam3.chr12            C 0 I 348
e micMur3.chr6               240797 2210 + 123392446 T
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29844143 0 - 170955103 C
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=7800.000000
s hg38.chr6_GL000254v2_alt  1094797 1 +   4827813 g
s panTro5.chr6             30060431 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30291070 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6099469 1 +   6154872 g
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30394699 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29230422 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      35598 1 +    273075 G
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2955308 1 -   3067355 g
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30202680 1 + 171630274 g
i calJac3.chr4             C 0 I 75183
s saiBol1.JH378341            18327 1 +    515838 g
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     398927 1 -   1771730 g
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     154415 1 -    383796 G
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16991268 1 -  18854210 G
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e canFam3.chr12              989026 348 +  72498081 I
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29844143 0 - 170955103 C
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=112836.000000
s hg38.chr6_GL000254v2_alt  1094798 28 +   4827813 ATGcaagcttgtccaacctgcagctctc
s panTro5.chr6             30060432 28 + 175400573 ATGcaagcttgtccaacctgcagctctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30291071 28 + 173848474 ATGcaagcttgtccaacctgcagctctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6099470 28 +   6154872 atgcaagcttgtccaacctgcagctctc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30394700 28 + 172585720 ATGcaagcttgtccaacccgtggctctc
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29230423 28 -  71996105 ATGcaagcttgtccaacccgtggctctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      35599 28 +    273075 ATGcaagcttgtccaacctgtggctctc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2955309 28 -   3067355 ATGcaagcttgtccaacccgtggctctc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            18328 28 +    515838 atgtaagcttctccaacctgctgctcac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     398928 28 -   1771730 atgcaagcttgtccaacctgtggctcac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     154416 28 -    383796 ATGcaagcttgtccaacgtgcggctccc
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16991269  1 -  18854210 ---------------A------------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e canFam3.chr12              989026 348 +  72498081 I
e calJac3.chr4             30202681 75183 + 171630274 I
e cerAty1.NW_012002711v1     746915 1045 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29844143  0 - 170955103 C
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=96878.000000
s hg38.chr6_GL000254v2_alt  1094826 18 +   4827813 gggatgcatgtggcccag
s panTro5.chr6             30060460 18 + 175400573 gggatgcatgtggcccag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30291099 18 + 173848474 gggatgcatgtggcccag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6099498 18 +   6154872 gggatgcatgtggcccag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30394728 18 + 172585720 gggatgcatgtggcccag
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002711v1     747960 17 +    766320 gggatgcatgtggccca-
i cerAty1.NW_012002711v1   I 1045 C 0
s chlSab2.chr17            29230451 18 -  71996105 tggctgcatgtggcccag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      35627 18 +    273075 gggatgcatgtggcccag
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2955337 18 -   3067355 gcgatgcatggggcccag
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            18356 18 +    515838 aggccgcatgtggcccag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     398956 18 -   1771730 aggctgcatgtggcccag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     154444 18 -    383796 aggctgcatgtggtccag
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16991270 13 -  18854210 -----GCATGTGTTCTAG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e canFam3.chr12              989026 348 +  72498081 I
e calJac3.chr4             30202681 75183 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29844143  0 - 170955103 C
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=736629.000000
s hg38.chr6_GL000254v2_alt  1094844 161 +   4827813 gacagctttagaa--tgtgacgatttttttg-ctta-tctgtagtggcagatatcatgaaaattatccatg-ca-ttttttttctttttt-ctatttttttctgctcatcagctgtcattagtgta-ttttttgtgtggctcaagacaa---ttcttcttcctatgtgaccc
s panTro5.chr6             30060478 161 + 175400573 gacagctttagaa--tgtgacgatttttttg-ctta-tctgtagtggcagatatcatgaaaattatccatg-ct-ttttttttctttttt-ctatttttttctgctcatcagctgtcattagtgta-ttttttgtgtggctcaagacaa---ttcttcttcctatgtgaccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30291117 162 + 173848474 gacagctttagaa--tgtgacgatttttttg-ctta-tctgtagtggcagatatcatgaaaattatccatgtct-ttttttttctttttt-ctatttttttctgctcatcagctgtcattagtgta-ttttttgtgtggctcaagacaa---ttcttcttcctatgtgaccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6099516 160 +   6154872 gacagctttagaa--tgtgacga-atttttg-ctta-tctgtagtggcagatatcatgaaaattatccatg-ca-ttttttttctttttt-ctatttttttctgctcatcagctgtcattagtgta-ttttttgtgtggctcaagacaa---ttcttcttcctatgtgaccc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30394746 160 + 172585720 gacagctttagaa--tgtgacgacttttttg-ttta-tttgtagtgacagatatcatgaaaattatccacg-cacctttttttcttttct-ctatttttttctgctcatcagctgtcattagtgtatttttttgtgtagctcaagacaa------ctcttcccatgtgaacc
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002711v1     747977 164 +    766320 gacagttttagaacgcgtgacgacttttttgatttactttgtagtggcagatatcatgaaaattatccacg-cacctttttttcttttct-ctatttttttctgctcatcagctgtcattagtgtagttttttgtgtggctcaagacaa------ctcttcccatgtgaacc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29230469 160 -  71996105 gacagctttagaa--tgtgacgacttttttg-ttta-tttgtagtggcagatatcatgaaaattatccatg-tacctttttttcttttct-ctatttttttctgctcatcagctgtcattagtgtatttttttgtgtagctcaagacaa------ctcttcccatgtgaacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      35645 160 +    273075 gacagttttagaa--tgtgacgacttttttg-ttta-tttgtagtggcagatatcatgaaaattatccacg-cacccttttttcttttct-ctatttttttctgctcatcagctgtcattagtgtagttttttgtgtagctcaagacaa------ctcttcccatgtgaacc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2955355 160 -   3067355 gacagctttagaa--tgtgacgacttttttg-ctta-tttgtagtggcagatatcatgaaaattatccatg-cacctttttttcttttct-ctatttttttctgctcatcagctgtaattagtgtatttttttgtgtggctcaagacaa------ttcttcccttgtgaacc
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            18374 163 +    515838 gacagcttc-gaa--tgtgaagacgtttttg-ctta-tctatggtggcagatatcatgaaaattgtacatg-ta--cttttttcttttttatgattattttctcctcatcagctgtcattagtgta-atttatgtgtagctcaagacaattcttcttcttcccatgtggttc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     398974 152 -   1771730 gacagcttc-aaa--tgtgagtacatttttg-ctta-tctgtggtggcagatatcatgaaaatt----atg-ta--cttttttctttttt-cgatttttttctgctcatcagctgtcattagtgta-ttttatgtgtggctcaagacaa------ttcttcacatgttgccc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     154462 162 -    383796 gacagcttc-gaa--tgtgaagacgtttttg-ctta-tctgtggtggcagatatcataaaagttatgcatg-ta--cttttttctttttt-tgattattttctgctcatcagctgtcattagtgaa-ttttatgtgtggctcaagacaattcttctccttcccatgtggtcc
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e canFam3.chr12              989026 348 +  72498081 I
e otoGar3.GL873550         16991283   0 -  18854210 C
e calJac3.chr4             30202681 75183 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29844143   0 - 170955103 C
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=221990.000000
s hg38.chr6_GL000254v2_alt  1095005 43 +   4827813 agggaagccaaaagattggacacctctgCAGGCAGATGATATA
s panTro5.chr6             30060639 43 + 175400573 agggaagccaaaagattggacacctctgCAGGCAGATGATATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30291279 43 + 173848474 agggaagccaaaagattggacacctctgCAGGCAGATGATATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6099676 42 +   6154872 agggaagccaaaagattggacacctctgcagg-agatgatata
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30394906 43 + 172585720 agggaagacaaacgattggacacctctgTAGGCAGATGATAGA
i rheMac8.chr4             C 0 I 4
s cerAty1.NW_012002711v1     748141 43 +    766320 agggaagacaaacgattggacacctctgTAGGCAGATGATAGA
i cerAty1.NW_012002711v1   C 0 I 4
s chlSab2.chr17            29230629 43 -  71996105 agggaagacagacgattggacacctctgTAGGCAGATGATAGA
i chlSab2.chr17            C 0 I 4
s manLeu1.NW_012101121v1      35805 43 +    273075 agggaagataaacgattggacacctctgTAGGCAGATGATAGA
i manLeu1.NW_012101121v1   C 0 I 4
s colAng1.NW_012115566v1    2955515 43 -   3067355 aaggaagacaaacgattggacacctctgTAGGCAGATGATAGA
i colAng1.NW_012115566v1   C 0 I 4
s saiBol1.JH378341            18537 43 +    515838 agggaagtgaaaagattggacccctctgtaggcagacgataga
i saiBol1.JH378341         C 0 I 4
s cebCap1.NW_016107755v1     399126 43 -   1771730 agggaagtgaaaacattggacacctctgtaggcagatgacaga
i cebCap1.NW_016107755v1   C 0 I 4
s aotNan1.NW_018496904v1     154624 43 -    383796 agggaagtcaaaacattggacacctctgTAGGCAGATGATAGA
i aotNan1.NW_018496904v1   C 0 I 4
s otoGar3.GL873550         16991283 21 -  18854210 AGGGAAG----------------------AGACAGACTATACA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e canFam3.chr12              989026 348 +  72498081 I
e calJac3.chr4             30202681 75183 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29844143  0 - 170955103 C
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=355062.000000
s hg38.chr6_GL000254v2_alt  1095048 54 +   4827813 GTATAAGCAGAGTAGGAACAGAAAATGCTTGAGTTAGAAGGT-----GGCAAGTGCTGT
s panTro5.chr6             30060682 54 + 175400573 GTATAAGCAGAGTAGGAACAGAAAATGCTTGAgttagaaggt-----ggcaagtgctgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30291322 54 + 173848474 GTATAAGCAGAGTAGGAACAGAAAATGCTTGAGTTAGAAGGT-----GGCAAGTGCTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6099718 54 +   6154872 gtataagcagagtaggaacagaaaatgcttgagttagaaggt-----ggcaagtgctgt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30394953 54 + 172585720 GTATAAGCAGAGTAGGAACAGAAAATGCTTGAGTGAGAAGGT-----GGCAAGTGCTGT
i rheMac8.chr4             I 4 C 0
s macFas5.chr4             29844143 54 - 170955103 GTATAAGCAGAGTATGGAAGGCAAATTCTTGTGTTAGAAGGT-----GGCAAGTGCTGT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     748188 54 +    766320 GTATAAGCAGAGTAGGAACAGAAGATGCTTGAGTGAGAAAGT-----GGCAAGTGCTGT
i cerAty1.NW_012002711v1   I 4 C 0
s chlSab2.chr17            29230676 54 -  71996105 GTATAAGCAGAGTAGGAACAGATAATGGTTGAGTGAGAAGGT-----GGCAAGTGCTGT
i chlSab2.chr17            I 4 I 168
s manLeu1.NW_012101121v1      35852 59 +    273075 GTATAAGCAGAGTAGGAACAGAAAATGCTTGAGTGAGAAGGTGGCAAGGCAAGTGCTGT
i manLeu1.NW_012101121v1   I 4 C 0
s colAng1.NW_012115566v1    2955562 54 -   3067355 GTATAAGCAGAGTAGGAACAGAAAATGCTTGAgtgagaaggt-----ggcaagtgctgt
i colAng1.NW_012115566v1   I 4 C 0
s saiBol1.JH378341            18584 54 +    515838 gtataagcagagtaaaagcagaaaatgcttgagtgagaaggt-----ggcaagtgctgt
i saiBol1.JH378341         I 4 C 0
s cebCap1.NW_016107755v1     399173 54 -   1771730 gtataagcagagtaagagcagaaaatgcttgagttagaaggt-----ggcaagtactgt
i cebCap1.NW_016107755v1   I 4 C 0
s aotNan1.NW_018496904v1     154671 54 -    383796 GTATAAGCAGAGTCAGAGCAGAAAATGCTTGAgttagaaggt-----ggcaagtgctgt
i aotNan1.NW_018496904v1   I 4 C 0
s otoGar3.GL873550         16991304 39 -  18854210 CTATGAGCACAGCAAATAAGGAGAGTGTTC--------ATGT-----GGTAC-------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              989374 53 +  72498081 gtgtAAGCACAGTAAGTAAGGGAGGTGTAGACATTGGAAGTA-----GGTAGGAGCTT-
i canFam3.chr12            I 348 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e calJac3.chr4             30202681 75183 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=280802.000000
s hg38.chr6_GL000254v2_alt  1095102 44 +   4827813 GTGGCAGGTGATCCAGag----ggtg--ggctgtgggtacaggg-a-ggtgg
s panTro5.chr6             30060736 44 + 175400573 gtggcaggtgatccagag----ggtg--ggctgtgggtacaggg-a-ggtgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30291376 44 + 173848474 GTGGCAGGTGATCCAGag----ggtg--ggctgtgggtacaggg-a-ggtgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6099772 44 +   6154872 gtggcaggtgatccagag----ggtg--ggctgtgggtacaggg-a-ggtgg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30395007 44 + 172585720 GTGGCAGGTGATCCAGAG----TGTG--GGCTGTGGGGACAGGG-A-GGTGG
i rheMac8.chr4             C 0 I 112
s macFas5.chr4             29844197 45 - 170955103 GGAGTGAGTCATCCAGAG----TGTG--GGCTGTGGGGACAGGGAA-GGTGG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     748242 44 +    766320 GTGGCAGGTGATCCAGAG----TGTG--GGCTGTGGGGACAGGG-A-GGTGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29230898 44 -  71996105 GTGGCAGGTGATCcagag----tgtg--ggctgtggggacaggg-a-ggtgg
i chlSab2.chr17            I 168 C 0
s manLeu1.NW_012101121v1      35911 44 +    273075 GTGGCAGGTGATCCAGAG----TGTG--GGCTGtggggacaagg-a-ggtgg
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2955616 44 -   3067355 gtggcaggtgatccagag----tgtg--ggctgtggggacaggg-a-ggtgg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            18638 42 +    515838 -gggcaggtgat-cagag----tgtg--ggctgtggggacaggg-a-ggcgg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     399227 44 -   1771730 ggggcaggtgatccagag----tgtg--ggctgtggggacaggg-a-ggtgg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     154725 44 -    383796 ggggcaggtgatccagag----tgtg--ggctgtggggacaggg-a-ggcgg
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16991343 34 -  18854210 CAGGAACATgacccagaggtcatgat--ggccctgg----------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              989427 46 +  72498081 GAGGAAGGTGACCCAGAG----AGAACCTGCTCTAGG-ACAGGG-ACGGTGG
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e calJac3.chr4             30202681 75183 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=266479.000000
s hg38.chr6_GL000254v2_alt  1095146 37 +   4827813 ctgttgtgctgggtggtcagcatgggccttgttgcaa
s panTro5.chr6             30060780 37 + 175400573 ctgttgtgctgggtggtcagcatgggccttgttgcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30291420 37 + 173848474 ctgttgtgctgggtggtcagcatgggccttgttgcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6099816 37 +   6154872 ctgttgtgctgggtggtcagcatgggccttgttgcaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30395163 37 + 172585720 ctgttgtgctgggtggtcagcatgggccttgttgcaa
i rheMac8.chr4             I 112 C 0
s macFas5.chr4             29844242 37 - 170955103 CTGTTATACTATGTAGTCAGCATGGGCTTTGTTGCAA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     748286 37 +    766320 CTGTTGTGCTGGGTGGTCAGCATGGGCCTTGTTGCAA
i cerAty1.NW_012002711v1   C 0 M 545
s chlSab2.chr17            29230942 37 -  71996105 ctgttgtgctgggcggtcagcatgggtcttgttgcaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      35955 37 +    273075 ctgttgtgctgggtggtcagcatgggccttgttgcaa
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2955660 37 -   3067355 ctattgtgctgggtggtcagcatgggccttgttgcaa
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            18680 37 +    515838 ttgctgtgctgggtggtcagcatgggccttgtggcaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     399271 37 -   1771730 ctgctgtgctgggtggtcagcatgggccttgttgcaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     154769 37 -    383796 ctgttgtgctgagtgatcagcatgggccttgttgtaa
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16991377 33 -  18854210 ccatggtgct----ggttagtgtgggacttgtcataa
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              989473 37 +  72498081 CCACCTTACTGCAGGGATTgggggagcctccctgaga
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e calJac3.chr4             30202681 75183 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=94657.000000
s hg38.chr6_GL000254v2_alt  1095183 19 +   4827813 atgtgaccttggagtaaag
s panTro5.chr6             30060817 19 + 175400573 atgtgaccttggagtaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30291457 19 + 173848474 atgtgaccttggagtaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6099853 19 +   6154872 atgtgaccttggagtaaag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30395200 19 + 172585720 atgtgaccttggagtaaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29844279 19 - 170955103 ATGTGACCTGCAAGGAAAG
i macFas5.chr4             C 0 I 2564
s chlSab2.chr17            29230979 19 -  71996105 atgtgacctgggagtaaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      35992 19 +    273075 atgtgaccttggagtaaag
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2955697 19 -   3067355 atgtgaccttggagtaaag
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            18717 19 +    515838 atgtgaccttcgagtgaag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     399308  8 -   1771730 atgcgacc-----------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     154806 19 -    383796 atgtgacctttgagtgaag
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16991410 19 -  18854210 aggagatctttgaggaaag
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              989510 16 +  72498081 aggtgacctgggagag---
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e calJac3.chr4             30202681 75183 + 171630274 I
e cerAty1.NW_012002711v1     748323 545 +    766320 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=903578.000000
s hg38.chr6_GL000254v2_alt  1095202 156 +   4827813 atttgagggatgtgaggagttgtctacacggatgtctcag-aaagttcttttcaggca-gggaaaccttcagtgcagatgcactagggcaggaaattgt-ctgtgttcctggaaggaggaagaggccagaagtgttgaa-cagagagaaa----ctgaaatgaa
s panTro5.chr6             30060836 156 + 175400573 atttgagggatgtgaggagttgtctacacggatgtctcag-aaagttcttttcaggca-gggaaaccttcagtgcagatgcactagggcaggaaattgt-ctgtgttcctggaaggaggaagaggccagaagtgttgaa-cagagagaaa----ctgaaatgaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30291476 156 + 173848474 atttgagggatgtgaggagttgtctacacggatgtctcag-aaagttcttttcaggca-gggaaaccttcagtgcagatgcactagggcaggaaattgt-ctgtgttcccggaaggaggaagaggccagaagtgttgaa-cagagagaaa----ctgaaatgaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6099872 156 +   6154872 atttgagggatgtgaggagttgtctacaaggatgtctggg-aaagttcttttcaggca-ggggaaccttcagtgcagatgcactagggcaggaaattgt-ctgtgttcctggaaggaggaagaggccagaagtgttgaa-cagagagaaa----ctgaaatgaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30395219 155 + 172585720 atttgagggatgtgaggagttgtccacagggatgtctggg-aaagttcttttcaggca--gggaaccttcagtgcagatgcacgagggcaggaaattgt-ctgtgttcctggaaggatgaagaggtcagaagggttgaa-cagagagaaa----ctgaaatgag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29846862 156 - 170955103 atttgaaggacatgaggagatacctacgaggatgtctagg-aaagttctttccaggca-ggggagcctcccgtgaaaatgcactagggcaggaaggtat-ctgtcttttgggaagtgagaagagtccagacgggctgga-cagagagtga----ctgagatgag
i macFas5.chr4             I 2564 C 0
s chlSab2.chr17            29230998 155 -  71996105 atttgagggatgtgaggagttgtccacagggatgtctagg-aaagttcttttcaggca--gggaaccttcagtgcagatgcactagggcaggtaattgt-ctgtgttcctggaaggatgaagaggtcggaagggctgga-cagagagaaa----ctgaaatgag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      36011 155 +    273075 atttgagggatgtgaggagttgtccacagggatgtctggg-aaagttcttttcaggca--gggaaccttcagtgaagatgcactagggcaggaaattgt-ctgtgttcctggaaggatgaagaggtcagaagggttgaa-cagagggaaa----ctgaaatgag
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2955716 156 -   3067355 atttgaggtatgtgaggagttgtccacaaggatgcctggg-aaagttcttttcaggca-ggggaaccttcagtgcagatgcactagggcaggaaattgt-ctgtgttcctggaaggatgaagaggtcagaagggttgaa-cagagagaaa----ctgaaatgag
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            18736 154 +    515838 acttgagagatgtgaggagctgtccccaaggatgactggg-aaagctcttttcaggca---ggaaccttcagtgcagatgcactagggcagggaagtgt-ctgtgatcctggaaggaggaaaaggccagaagggctgga-cagagagaaa----ctgaaatgag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     399316 137 -   1771730 -----------gtgaggagctgtccacaaggatgactggg-aaagctcttttcaggca---ggaaccttcag------tgcactagggcaggaaagtgt-ctgtgttcccggaaggaggaagaggccagcagggctgga-cagagaaaaa----ctgaaatgaa
i cebCap1.NW_016107755v1   C 0 I 334
s aotNan1.NW_018496904v1     154825 154 -    383796 atttgagggatgtgaggagctgtccacaagaatgactggg-aaagctcttttcaggca---ggaaccttcagtgccgatgcactagggcaggaaagtgt-ctgtgttcctggaaggatgaagaggccagaagggctgga-cagagagaaa----ctgaaatgag
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16991429 155 -  18854210 atctgaaggatacgatggattatctatgaggatgtctggg--aagtttcctccaggcagggggaaacttcagccgaaatgcactggggcagcaagatgt-ctgtatt-ctgggaaaagcaggaggccaggagggctgga-cagagaatca----ccaagatgag
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              989526 157 +  72498081 -attggaggacatga---attgtgtaggaggatgtctgggggaagttctttccaggca--gggaacctcca-tgctcaagctccagggcaggagcctgtcccatgtttgagggagggtgaggaggcccctggggctggagcagagagcaaggggatgacatgac
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e calJac3.chr4             30202681 75183 + 171630274 I
e cerAty1.NW_012002711v1     748323 545 +    766320 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=2292366.000000
s hg38.chr6_GL000254v2_alt  1095358 404 +   4827813 gtcagaggtgtgcccagagcaggttgccctggagggtgtgggaaggatgttgacctttgctctgaatgacatggggagttagaggacagttttg---gaaagtgggacatggtaggacttatcctttgaaagcttctctctggctgc-----tgtgctgagaacagaattgagaggtg--ggggactagtgaggcagtgggaaaaacggtgggaaaggagtgcagtattccaggatggagacgtcgctt--accttgactggggtgtgagcaggggaaatagtgggaagtgatgggattctggatgaat---------------tcacagcacttgctaatggatt-tatctgtggtgtgagaaagaagaatcaa---gga---cacccacagtattggactgagtgagcagaagggtggagctgctgtcagtggaga
s panTro5.chr6             30060992 404 + 175400573 gtcagaggtgtgcccagagcaggttgccctggagggtgtgggaaggatgttgacctttgctctgaatgacatggggagttagaggacagttttg---gaaagtgggacatggtaggacttatcctttgaaagcttctctctggctgc-----tgtgctgagaacagaattgagaggtg--ggggactagtgaggcagtggggaaaacagtgggaaaggagtgcagtattccaggatggagacgtcgctt--accttgactggggtgtgagcaggggaaatagtgggaagtgatgggattctggatgaat---------------tcacagcacttgctaatggatt-tatctgtggtgtgagaaagaagaatcaa---gga---cacccacagtattggactgagtgagcagaagggtggaggtgctgtcagtggaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30291632 404 + 173848474 gtcagaggtgtgcccagagcaggttgccctggagggtgtgggaaggatgttgacctttgctctgaatgacatggggagttagaggacagttttg---gaaagtgggacatggtaggacttatcctttgaaagcttctctctggctgc-----tgtgctgagaacagaattgagaggtg--ggggactagtgaggcagtggggaaaacagtgggaaaggagtgcagtattccaggatggagacgtcgctt--accttgactggggtgtgagcaggggaaatagtgggaagtgatgggattctggatgaat---------------tcacagcacttgctaatggatt-tatctgtggtgtgagaaagaagaatcaa---gga---cacccacagtattggactgagtgagcagaagggtggagctgctgtcagtggaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6100028 402 +   6154872 gtcagaggtgtgcccagagcaggttgccctggagggtgtgggaaggatgttgacctttgctctgaatgacatggggagttagaggacagttttg---gaaagtgggacatggtaggacttatcctttgaaagcttctctctggctgc-----tgtgctgagaacagaattgagaggtg--ggggactagtgaggcagtggggaaaacggtgggaaaggagtgcagtattccaggatggagacgtcgctt---ccttgattggggtgtgagcaggggaaatagtgggaagtgatgggattctggatgaat---------------tcacagcacttgct-atggatt-tatctgtggtgtgagaaagaagaatcaa---gga---cacccacagtattggactgagtgagcagaagggtggagctgctgtcagtggaga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30395374 414 + 172585720 gtcagaggtgtggacagagcaggtagccctggaggatgtgggaagggtgttgacctttgctctgaatgacatggggagttagaggacagttttg---aaaagtgggacatggtagggcttctcctttgaaagcttctctctggctgc-----tgtgctgagaacagaattgagaggt---ggggaccagtgaggcagtggggaaaacagtgggaaaggagtggaatattccagaatggagatgttgctt--accttgactggggtgtga-caggggaaatagtgggaagtgaagggattctggatgaat-gtgaagatggac-ttcacagcacttgctaatggatt-tatctgtggtgtgag-aagaagaatcaa---ggg---caaccacagtgttggactgagtgagcaaaagggtggagctgctgtcagtggaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29847018 386 - 170955103 gtcagaggtgtggccagagcaggtaggcctggagagtgtggccagggttttcacttttgctctgagtgagatggtgagtttcagtacagttttg---aaaagtgggacatggtacgacttactcttcaaaagcttctctctggctgc-----cctattgagaacagaactgagaggtg--ggggacaagtgaggcagtagagaaaacagtgggaaaggcatgtagcatttcaggatagagacatcggtt--accttgacccgggtgtgaccagtaaaaataatgagaagtgatgggattctggatg---------------c-atcatagcatttgctaatggattgtatctgtg------------------aa---aga---cagccatggttttagactatgagagtagaagggtggagttgctgtcagtggaga
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29231153 415 -  71996105 gtcagaggtgtggacagagcaggtagccctggagggtgtgggaagggtgttgacctttgctctgaatgacatggggagttagaggacagtgttg---aaaagtgggacatggtaggacttatcctttgaaagcttctctctggctgc-----tgtgctgagaacagaattgagaggt---ggggaccagtgaggcagtggggaaaacagtgggaaaggagtggaatattccagaatggagatgttgctt--accttgactggggtgtgagcaggggaaatagtgggaagtgaagggattctggatgaat-gtgaagatggac-ttcacagcacttgctaatggatt-tatctgtggtgtgag-aagaagaatcaa---gga---cacctacagtgttggactgagtgagcagaagggtggagctgctgtcagtggaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      36166 415 +    273075 gtcagaggtgtggacagagcagatagccctggaggatgtgggaagggtgttgacctttgctctgaatgacatggggagttagaggacagttttg---aaaagtgggacatggtaggacttatcctttgaaagcttctctctggctgc-----tgtgctgagaacagaattgagaggt---ggggaccagtgaggcagtggggaaaacagtgggaaaggagtggaatattccagaatggagatgttgctt--accttgactggggtgtgagcaggggaaatagtgggaagtgaagggattctggatgaat-gtgaagatggac-ttcacagcacttgctaatggatt-tatctgtggtgtgag-aagaagaatcaa---gga---catctacagtgttggactgagtgagcagaagggtggagctgctgtcagtggaga
i manLeu1.NW_012101121v1   C 0 M 1865
s colAng1.NW_012115566v1    2955872 415 -   3067355 gtcagaggtgtggacagagcaggtagccctggagggtgtgggaagggtgttgacctttgctctgaaagacatggggagttagaggacagttttg---aaaagtgggacacagtaggacttatcctttgaaagcttctccctggctgc-----tgtgctgagaacagaattcagaggt---ggggaccagtgaggcagtggggaaaatggtgggaaagcagtggagtattccaggatggagatgttgctt--accttgactggggtgtgaacaggaaaaacagtgggaagtgaagggattctggatgaat-gtgaagatggac-ttcacagcacttgctaatggatt-tatctgtggtgtgag-aagaagaatcca---ggg---gacccacagtgttggactgagtgagcagaagggtggagctgctgtcagtggaga
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            18890 416 +    515838 gtcagagatgtggccagagcaggtaggcctggagggtgtgggaagggttttgatttttgctttgaaacgtatggggagttagaggacagttttg---aaaagtgggacatggtgggacttatcctttgaaagcttctctctggctgc-----tgtgctgagaacagaattgagaggt---ggggacaagggaggcaataggg-aatcgatgggaaaggagagcaatattccaggatggagacgctggtt--accttgactgggatgtgagcaggggaaatggtgggaagtgatgggattccggatgaat-ttgaagatgaac-ttcacagcacttgctaatggattgtatctgtggtgtgagaaagaagaatcaa---gga---cacccacagtgttggactgagtgagtagaaggacggagctgctgtcagcggaga
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     399787 416 -   1771730 gtcagagattttgccagagcaggtaggcctggagggtgtaggaagggttttttcatttgctatgaatgacacggagagttagaggacagttttg---aaaagtgggacatggtgggacttaaactttgaaagcttctctctagctgc-----tgtgctgagaacagaattgagaggtg--ggggacaagtgaggcagtaggg-agttggtggg-aaggagcacagtattccaggatggagacgctggtt--accttgactggggtgtgagcaggggaaatggtgggaagtgatgggattccggaagaat-ttgaagatggac-ttcacagcacttgctaatggattgcgtctgtggtgtgagaaagaagaatcaa---gga---cacccacagtgttggactgagtgagtagaagggtggagctgctgtccgtggaga
i cebCap1.NW_016107755v1   I 334 C 0
s aotNan1.NW_018496904v1     154979 416 -    383796 gtgagaggtgtggccagagcagataggtctgaagggtgtgggaaggg-tttgaattttgctctgactgacatggggagttagaggacagttttg---aaaagtgggacatgctgggacttatcctttgaaagcttctctctggctgc-----tgtgctgagaacagaattgagagttg--ggagacaagtgaggcagtaggg-aaatggtggggaaggagtgtggtattccaggatggagatgctggtt--acgttgtctggggtgtgagcaggggaaatgctgggaagtgatgggattcttggtgaat-ttgaagatggac-ttcacagcactggctaatggattgtatctgtggtgtgagaaagaagaatcaa---gga---cacccacagtgtgggactgagtgagtagaagggtggagctgctgtcagtggaga
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16991584 398 -  18854210 atcagaggtgtggctggagcaggtagtcctggagtg-gtagaaagagag-tgtcctttgctcagagggacatttggagttagaggacagttttgagcagaagagggacgtggt---cccttctctttaacagggtctctctggctgc-----ggtgctgagaactgaactgagaggca--ggggacaatagagg-agtaagg-atacagcaggcaaggagggcaggattccagactacagatact-----------------ggtgtgagcagcaggagtggagggaagtgatagg-ctctggatacattttgaaggtggacttttatagcatcttctaatg-----catctggggtgtgaggaagaggagtccaagtgga---cacccacagctgtgggctgtgtgagcataaggatggagctgctgttggtggaga
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              989683 380 +  72498081 ------------atcacgtcatggagcct--gaggacagtagaagggttttgagtttt-ctctgagtgagatgtggagttataagaa-----tg---aacag--------------atcaattcattgaa----tttctttaccagcacctgtttgctgcgtgcagaattgagaggtgaaggggagcaac----tagtaggg-aacctgtagg-acccagggcagtgtcccaggagggggatgggggctgaacat---ctggaatgtggggagggaagataataggaaatgagtgggtgctggatatgt-ttacaggtgaat-tttgcagcatttcctaaggcattccttctggggggtgagagggagggatcaa---ggagggcatccggtatttcagact--gcaaggagaagtgtgcag-tgccttccatggaga
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e calJac3.chr4             30202681 75183 + 171630274 I
e cerAty1.NW_012002711v1     748323 545 +    766320 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=340166.000000
s hg38.chr6_GL000254v2_alt  1095762 68 +   4827813 -tgggga-gactctggcaggagcaTA-CAGAGGAGAGGGCATTGCAGGCATCCAGT---GGAGGTGACATCTAC-----
s panTro5.chr6             30061396 68 + 175400573 -tgggga-gactctggcaggagcaTA-CAGAGGAGAGGGCATTGCAGGCATCCAGT---GGAGGTGACATCTAC-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30292036 68 + 173848474 -tgggga-gactctggcaggagcaTA-CAGAGGAGAGGGCATTGCAGGCATCCAGT---GGAGGTGACATCTAC-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6100430 66 +   6154872 -tgggga-gactct-gcaggagcaTA-CAGAGGAGAGGGCATTGCAGGCAT-CAGT---GGAGGTGACATCTAC-----
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30395788 68 + 172585720 -tgggga-gactctggcaggagcata-tagaggagagggcatcgcaggcattcagt---GGAGGAGACATCTAC-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29847404 68 - 170955103 -tggaga-gactctggcaggagtata-caggggagagggcatctcaggcattcaTT---AGAGGAGATGTCTAC-----
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29231568 68 -  71996105 -tgggga-gactctggcaggagcaTA-CAGAGGAGAGGGCATCGCAGGCATTCGGT---GGAGGAGACATCTAC-----
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2956287 68 -   3067355 -tgggga-gactctggcaggatcaTA-CAGAGGAGAGGGCATCGCAGGCATTCAGG---GGAGGAGACATCTAT-----
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            19306 68 +    515838 -tgggga-gactctggcaggagcata-cagaggagagggcatcgcaggcattcagt---GGAGGAGACATCTAA-----
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     400203 68 -   1771730 -cgggga-gactctggcaggagcata-cggaggagagggcatcgcaggcattcagt---GGAGGAGACATCTAC-----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     155395 68 -    383796 -caggga-gactctggcaggagcata-cggaggagagggcgtcgcaggcattcagt---GGAGGAGACATCTAC-----
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16991982 70 -  18854210 -tggggataactctggcttaggtatgtttgaggaatgggcatcctaggcattcagt---ggaggaggtgtccat-----
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              990063 76 +  72498081 tgaagga-gacactggaatcaggaca-ttgggaagc-agcatcacagacatccacttaggaatgtggaatctgggctat
i canFam3.chr12            C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e calJac3.chr4             30202681 75183 + 171630274 I
e manLeu1.NW_012101121v1      36581 1865 +    273075 M
e cerAty1.NW_012002711v1     748323 545 +    766320 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=102281.000000
s hg38.chr6_GL000254v2_alt  1095830 15 +   4827813 GAGGAATGAAGGTGA
s panTro5.chr6             30061464 15 + 175400573 GAGGAATGAAGGTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30292104 15 + 173848474 GAGGAATGAAGGTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6100496 15 +   6154872 GAGGAATGCAGGTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30395856 15 + 172585720 GAGGAATGCAGGTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29847472 15 - 170955103 AAGGAATGCAGGTGA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     748868 15 +    766320 GAGGAATGCAGGTGA
i cerAty1.NW_012002711v1   M 545 C 0
s chlSab2.chr17            29231636 15 -  71996105 GAGGAATGCAGGTGA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2956355 15 -   3067355 GAGGAATGCAGGTGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            19374 15 +    515838 GAGGAGCGCAGGTGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     400271 15 -   1771730 GAGGAGTGCAGGTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     155463 15 -    383796 GAGGAGTGCAGGTGA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16992052 15 -  18854210 taggagtggagggga
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              990139 15 +  72498081 aagaaatgcagctga
i canFam3.chr12            C 0 N 0
e micMur3.chr6               240797 2210 + 123392446 T
e calJac3.chr4             30202681 75183 + 171630274 I
e manLeu1.NW_012101121v1      36581 1865 +    273075 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=18684.000000
s hg38.chr6_GL000254v2_alt  1095845 3 +   4827813 GGG
s panTro5.chr6             30061479 3 + 175400573 GGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30292119 3 + 173848474 GGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6100511 3 +   6154872 GGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30395871 3 + 172585720 GGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29847487 3 - 170955103 GGA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     748883 3 +    766320 GGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29231651 3 -  71996105 GGG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2956370 3 -   3067355 GGG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            19389 3 +    515838 GGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     400286 3 -   1771730 GGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     155478 3 -    383796 GGG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         16992067 3 -  18854210 aag
i otoGar3.GL873550         C 0 I 39597
e micMur3.chr6               240797 2210 + 123392446 T
e calJac3.chr4             30202681 75183 + 171630274 I
e manLeu1.NW_012101121v1      36581 1865 +    273075 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=376697.000000
s hg38.chr6_GL000254v2_alt  1095848 74 +   4827813 GCCCAGATGCCTCTGCAGCTACAGATTCATCATCCAATCACTATCCTACTTCCACCA-------CCCCTGTGTCTCAGAGC
s panTro5.chr6             30061482 74 + 175400573 GCCCAGATGCCTCTGCAGCTACAGATTCATCATCCAATCACTATCCTACTTCCACCA-------CCCCTGTGTCTCAGAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30292122 74 + 173848474 GCCCAGATGCCTCTGCAGCTACAGATTCATCATCCAATCACTATCCTACTTCCACCA-------CCCCTGTGTCTCAGAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6100514 73 +   6154872 GCCCAGATGCCTCTGCAGCTACAGATTCATCATCCAATCACTCTCCTACTCCCACCA--------CCCTGTGTCTCAGAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30395874 74 + 172585720 GCCCAGATGCCTCTGCAGCTACAGATTCATCATCCAATCACTTTCCTACTTCCGCCA-------CCCCTGTGTCTCAGAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29847490 81 - 170955103 ACCCAGATGGCTCTGCAGCTACAGCTTCATCATCAAATTACTCTCCTGCTTCCACACCCCTGATCCCCTGTATCTCAGAGC
i macFas5.chr4             C 0 I 395
s cerAty1.NW_012002711v1     748886 74 +    766320 GCCCAGATGCCTCTGCAGCTACAGATTCATCATCCAATCACTCTCCTACTTCCGCCA-------CCCCTGTGTCTCAGAGC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29231654 74 -  71996105 GCCCAGATGCCTCTGCAGCTACAGATTCATCATCCAATCACTCTCCTACTTCCGCCA-------CCCCTGTGTCTCAGAGC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2956373 74 -   3067355 GCCCAGATGCCTCTGCAGCTACAGATTCATCATCCAATCACTCTCCTACTTCCACCA-------CCCCTGTGTCTCAGAGC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            19392 72 +    515838 GCCCGGATGCCTCTGCAGCTACAGCGTCACCATCCAGTTACTCTCCTGCTTCCAC---------CCACTGTGTCTCAGAGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     400289 72 -   1771730 GCCCGGATGCCTCTGCAGCTACAGCTTCACCACCCAGTTACTCTCCTGCTTCCAC---------CCCCTGTGTCTCAGAGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     155481 72 -    383796 GCCCGGATGCCTCTGCAGCTACAGCTTCACCATCTAGTTACTCTCCTGCTTCTCC---------CCCATGTGTCTCAGAGG
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         16992070 39597 -  18854210 I
e calJac3.chr4             30202681 75183 + 171630274 I
e manLeu1.NW_012101121v1      36581 1865 +    273075 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=622689.000000
s hg38.chr6_GL000254v2_alt  1095922 147 +   4827813 CAGAGCATTGATTCTCCCCTGTGCTGTCTGCACAGGTAGGTGAAAGTCAGGGaagttatggtctgctgttggttataataagtcacagat-----------------------tattgtgctttct-cagataattaaagaaataataagagaatttgtaactagaacact
s panTro5.chr6             30061556 147 + 175400573 CAGAGCATTGATTCTCTCCTGTGCTGTCTGCACAGGTAGGTGAAAGTCAGGGaagttatggtctgctgttggttataataagtcacagat-----------------------tattgtgctttct-cagataattaaagaaataataagagaatttgtaactagaacact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30292196 147 + 173848474 CAGAGCATTGATTCTCTCCTGTGCTGTCTGCACAGGTAGGTGAAAGTCAGGGaagttatggtctgctgttggttataataagtcacagat-----------------------tattgtgctttct-cagataattaaagaaataataagagaatttgtaactagaacact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6100587 147 +   6154872 CAGAGCATTGATTCTCCCCTGGGCTGTGTGCACAGGTAGGTGAAAGTCAGGGAAGTTATGGTCTGCTGTTGGAtataataagtcacagat-----------------------tattgtgctttct-cagataattaaagaaataataagagaatttgtaactagaatact
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30395948 143 + 172585720 CAGAGCACTGATTCTCCCCTGGGCTGTCTGCACAGGCAGGTGAA----AGGGAAGTTACGGTCTGCTGTTGGTTATAATAAGTCACAGAT-----------------------TATTGTGCTTTCT-CAGATAATTAAAGAAATAATAAGACAATTTTTAACTAGAACACt
i rheMac8.chr4             C 0 I 699
s macFas5.chr4             29847966 166 - 170955103 CAGAGCACCAATTCTTTCCTGGGCTATCTGCACAGGTACGTGAA----AGGGAAGTTATGATTTCCAATTTGTTATAATAAGTCACAGATTAATATTGTTCTTTCTTggataatattgttctttct-tggataattaagggaataataagataatgggtaactaaaacact
i macFas5.chr4             I 395 C 0
s cerAty1.NW_012002711v1     748960 143 +    766320 CAGAGCACTGATTCTCCCCTGGGCTGTCTGCACAGGCAGGTGAA----AGGGAAGTTACGGTCTGCTGTTGGTTATAATAAGTCACAGAT-----------------------TATTGTGCTTTCT-CAGATAATTAAAGAAATAATAAGACAATTTTTAACTAGAACACt
i cerAty1.NW_012002711v1   C 0 I 639
s chlSab2.chr17            29231728 147 -  71996105 CAGAGCACTGATTCTCCCCTGGGCTGTCTGCACAGGCAGGTGAAAGTCAGAGAAGTTACGGtctgctgttggttataataagtcacagat-----------------------tattgtgctttct-tagataattaaagaaataataagataatttttaactagaacact
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2956447 140 -   3067355 CAGAGCACTGATTCTCCCCTGGGCTGTCTGCACAGGCAGGTGAA----AGGGAAGTTACGGTCTGCTGTTGGTT---ATAAGTCACAGAT-----------------------tattgtactttct-cagataattaaagaaatagtaagagaatttttaactagaacact
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            19464 141 +    515838 CAGAGCACTGATTCTCCCC-GGGCCGGCTGCAAAAGGAAGGGGAAAGCAAGCAAAGTAAGGGCCGCCGCTGGGTAAAAAAAACCAAGGAA-----------------------TAATGGGCCTTCCGAaaacaa------taaaaaaaaaaaaaaatggaaacaaaaaaac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     400361 140 -   1771730 CAAAGCACTGATTCTCCCT-GGGCTGTCTGCACAGGTAGGTGGAAGTCAGGGAAGTTATGGTCTGCTGTTGATTATAATAAGCCATGGAT-----------------------TATTAGGTTTTCT-CAGATAA------TTAAATAATAAGAAGTTGTAACTAGAACACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     155553 147 -    383796 CAGAGCACTGATTCTCCCCTGGGCTGTCTGCACAGGTAGGTGAAAGTCAGGGaagttatggtctgctgttggttataataagccatggat-----------------------tattgtgctttct-caggtaattaaagtaaaaataaaagaatttgtaactagaacact
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         16992070 39597 -  18854210 I
e calJac3.chr4             30202681 75183 + 171630274 I
e manLeu1.NW_012101121v1      36581 1865 +    273075 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=596183.000000
s hg38.chr6_GL000254v2_alt  1096069 206 +   4827813 tactgagaagaccacaataatgcaaagttttttattcatctaaagaaggcaacagaagaaaaatagttgagcaag---aaagataatattagaaggcagtaaatgaaaatggacagact----taaacccaatgaggtcaacaatgacattaaacgtaatggactcagacactccaatt-acaagacaaatagtgcagagggataaaaataaat
s panTro5.chr6             30061703 206 + 175400573 tactgagaagaccacaataatgcaaagttttttattcatctaaagaaggcaacagaagaaaaatagttgagcaag---aaagataatattagaaggcagtaaatgaaaatggacagact----taaacccaacgaggtcaacaatgacattaaacgtaatggacttagacactccaatt-acaagacaaatagtgcagagggataaaaataaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30292343 206 + 173848474 tactgagaagaccacaataatgcaaagttttttattcatctaaagaaggcaacagaagaaaaatagttgagcaag---aaagataatattagaaggcagtaaatgaaaatggacagact----taaacccaacgaggtcaacaatgacattaaacgtaatggacttagacactccaatt-acaagacaaatagtgcagagggataaaaataaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6100734 206 +   6154872 tactgagaagaccacaataatgcaaggttttttattcatctaaagaaggtaacagaagaaaaatagttgagcaag---aaagataatattagaaggcagtaaatgaaaatggacagact----taaacccaacgaggtcaacaatgacattaaacgtaatggactcagacactccaatt-acaagacaaatagtgcagagggataaaaataaat
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29848132 207 - 170955103 tattaagaatactacaataatgaaaatattttgattaatctaaaaaaggcaagaaaagaaaaataatggagcaaataaagaggtaatattagaaaacagcaaatgacaaggt--ggact----taaacccaatcagggcaacaatgacattaaagataatggactcaagcaccccaatt-acaagacaaatagtgcagaggggtaaaaataaat
i macFas5.chr4             C 0 I 24
s chlSab2.chr17            29231875 207 -  71996105 tattgagaagaccacaataacgcaaagatttt-attcatctaaagaaggcaacataagaaaaatagttgagcaag-aaaaagataatattagaaggcagcaaatgacaatgtacaaact----taaacccaatgaggtcaacaattacattaaacataatggactcaaacactccaatt-acaagacaaatagtgcagaggggtaaaaataaat
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2956587 211 -   3067355 tattgagaagaccacaataatgcaaagttttttattcatccaaagaaggcaacataag-gaaatagttgagcaag-aaagagataatattagaaggcagcaaatgacaatgtacagacttaaataaacccaatgaggtcaacaattacattaaacataatggactcagacactccaatt-acaagacaaatagtgcagaggggtaaaaataaat
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            19605 205 +    515838 taaccaaaaaaacaaaaaaaagcaaaattttctaatcaaccaaaaaaggcaaaaaaaaaaaaaatgccgaaaaaa-aaaaaaaaaaaaataaaaagcaacaaaagaaaaaggaaaaaac----taaaaccaaagaaggcaaaaaagaaaataaaaaaaaaggaaccaaaaaacccaaagaaaaaaaaaaaaaggacagagggaaaaaaaa----
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     400501 203 -   1771730 TATTCAGAAGTCCACAGTAATGCaaagtttt-tattcatctaaagaagacagcagaagaaaaatagttgagccaa-aaagacataatattagaaggcagcaaatgacaatgtacagact----taaacccaatgaggtcaacaatgacattaaacataatggactcacacactccaatg-acaagacaaatagtgcagagggggaaaaat----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     155700 204 -    383796 tattcagaagactacaataatgcaaagttttttattcatctaaagatggcaagagaagaaaaattgttgagcaaa-aaagatgtaatattagaaggcagcaaatgacaatgtacagact----caaacccagtgaggtcaacaatgacattaaacataatggactcacacactccaata-acaagacaaacagtgcagagggggaaaaat----
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         16992070 39597 -  18854210 I
e calJac3.chr4             30202681 75183 + 171630274 I
e manLeu1.NW_012101121v1      36581 1865 +    273075 M
e cerAty1.NW_012002711v1     749103 639 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e rheMac8.chr4             30396091 699 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1599295.000000
s hg38.chr6_GL000254v2_alt  1096275 364 +   4827813 aagtaaataaataaataaccgtaggctatttacaaaagccataatttcagtagaaggtacagaaaagttgaaagtaaaaagatagaaaagaaataccagacaaacattcatgaaaGACCACATGGAGATGCCATTTAGAAAAATTACAGCACATGAGTCTCCTGAGACATAGAGTACATGTAGACAGCTCACAGTGtctt--ttt--cctttttttcagagacagggtct------gttgcccaggttgaaatgcaatggtg---atatcagaccttactgtaacctcaaactcctgggctgaagcaattctcctgcctcagccttctgagtagctaggacgagaagcctgtgccgccacacctggctaTAATGTCT------
s panTro5.chr6             30061909 364 + 175400573 aagtaaataaataaataaccgtaggctatttacaaaagccataatttcagtagaaggtacagaaaagttgaaagtaaaaagatagaaacgaaataccagacaaacattcatgaaaGACCACATGGAGATGCCATTTAGAAAAATTACAGCACATGAGTCTCCTGAGACATAGAGTACATGTAGACAGCTCACAGTGtctt--ttt--cctttttttcagagacagggtct------gttgcccaggttgaaatgcaatggtg---atatcagaccttactgtaacctcaaactcctgggctgaagcaattctcctgcctcagccttctgagtagctaggacgagaagcctgtgccgccacacctggctaTAATGTCT------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30292549 364 + 173848474 aagtaaataaataaataaccgtaggctatttacaaaagccataatttcagtagaaggtacagaaaagttgaaagtaaaaagatagaaaagaaataccagacaaacattcatgaaaGACCACATGGAGATGCCATTTAGAAAAATTACAGCACATGAGTCTCCTGAGACATAGAGTACATGTAGACAGCTCACAGTGtctt--ttt--cctttttttcagagacagggtct------gttgcccaggttgaaatgcaatggtg---atatcagaccttactgtaacctcaaactcctgggctgaagcaattctcctgcctcagccttctgagtagctaggacgagaagcctgtgccgccacacctggctaTAATGTCT------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6100940 360 +   6154872 aag-aaataaataaataaccgtaggctatttacaaaagccataatttcagtagaa-gtacagaaaagttgaaagtaaaaagatagaaaagaaataccagacaaacattcatgaaaGACCACATGGAGATGCCATTTAGAAAAATTACAGCACATGAGTCTCCTGAGACATAGAGTACATGTAGACAGCTCACA-TGtctt--ttt--cctttttttcagagacagggtct------gttgcccaggttgaaatgcaatggtg---atatcagaccttactgtaacctcaaactcctgggctgaagcaattctcctgcctcagccttctgagtagctaggacgagaagcctgtgcc-ccacacctggctaTAATGTCT------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30396790 357 + 172585720 AAGTAAATAAATAAATAACCGTAGGTTATTTACAAAAGCCATAATTTCAGTAGAAGGTACAGAAAAGT------TAAAAGGATAGAAAAGAAATACCAGACAAACATTCATGAAAAACCACATGGAGATGCCATTTAGAAAAATTACAGGACGTGAGTCTCCTGAGACATGGAGCACATGTAGGCAGCTCACGCTGTGtt--ttt--cctttttttcagagacaggatct------attgcccaggctgcaatgcaatggtg---atatcatacctcactgtaacctcaaactcctgggctgaagcaattctcctgccgcagccttccgagtagctaggacgacaggcatgtgccgccacacct-gCTATAATGTCT------
i rheMac8.chr4             I 699 C 0
s macFas5.chr4             29848363 379 - 170955103 aaataaataaataaataaccataggctatttataaaagacatactatcagtggaagatacagaaaagttgaaagtaaaaggatagaaaagaaacaccagacaaacattcat-aaaaaCCACATGGAGATGCCATTTAGAAAAACTACAGGACGTGAATCTCCTGAGACATAGAGTACATGTAGACAGCTTATAACATATCTGttt--tctttttttcagagacaaggtcttgctcagttgccgagactgaaatgcagtggtgatcatagctgagctgactgtaacctccaactcctgggttcaagcaattctcct-tctcagccccccaagcagctaggactacaggcacacaccactacacctggcTATAACGTCCTTAATG
i macFas5.chr4             I 24 C 0
s cerAty1.NW_012002711v1     749742 357 +    766320 AAGTAAATAAATAAATAACCGTAGGTTATTTACAAAAGCCATAATTTCAGTAGAAGGTACAGAAAAGT------TAAAAGGATAGAACAGAAATACCAGACAAACATTCATGAAAAACCACATGGAGATGCCATTTAGAAAAATTACAGGACATGGGTCCCCTGAGACATAGACCACATGCAGACAGCTCACACTGTGtt--ttt--cctttttttcagagacagggtct------gttgcccaggctgcaatgcaatggtg---atatcatacctcactgtaacctcaaactcctgggctgaagcaattctcctgcctcagcctttcgagtaactaggacgacaggcatttgccgccacAGCT-GCTATAATGTCT------
i cerAty1.NW_012002711v1   I 639 C 0
s chlSab2.chr17            29232082 357 -  71996105 aagtaaataaataaataaccataggttatttacaaaagccataatttcagtagaaggtacagaaaagt------taaaaggatagaaaagaaataccagacaaacattcatgaaaaACCACATGGAGATGCCATTTAGAAAAATTACAGGACATGAGTCTCCTGAGACATGGAGAACATGCAGACAGCTCACACTGTGtt--ttt--cctttttttcagagacagggtct------gttgcccaggctgcaatgcaatggtg---atatcatacctcactataacctcaaactcctgggctgaagcaattctcctgcctcagccttccgagtagctaggacgacaggcatgtgccgccacacct-gCTATAATGTCT------
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2956798 357 -   3067355 aagtaaataaataaataaccataggctatttacaaaagccataatttcagtagaaggtacagaaaagt------taaaaggatagaaaagaaataccagacaaacattCATGAGAAACCACATGGAGATGTCATTTAGAAAAATTACAGGACATGAGTCTCCTGAGACATAGAGTACATGCAGACAGCTCACAATGTGtt--ttt--cctttttttcagagacaaggtct------gttgcccaggctgcaatgcaatggtg---atatcatacctcactgtaacctcaaactccagggctgaagcaattcccctgcctcagccttccgagtaactaggacgacaggcatgtgccaccacagcc-gCTATAAGGTCT------
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            19810 347 +    515838 aacaaaatagaaaaagagctagacgctgtacaaaaaacCTAAAATCACaagaaaagacaaaaaaaaaggaaaaaaaaaaggagaaaaaaaaaacaacagaaaaacacacaa-aaaaaaCACACAGAGA--CCACATAGAAAAAAAACACAACACAGAGATCCCCAGACACAGAGACCACATAGACACAGCACAACATCTC--TAGACACtttttttaagaaacagggtct------attgcccagactgaa-------------------atacctcagtgtaacctcaaaattctgggctgaagcaattctcccacaccagccttacaaatagctaggtctacaggcatgtgccaatacacctggctGTAACGTCT------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     400704 358 -   1771730 aagtcaataaataaatagctgtaggctgtttccaaaagccataatttcagcagaaggtacagaaacgctgaaagtaaaaggataggaaagaaatactagacacacattcat-gaaaaCCACATGGAGATGCCATTTAGAAAAATTACAGGACATGGATCTTGTGAGACAGAGAGTCCATGTAGACAGCTCACAATGtctt--t----actttttttcagagacagggtct------gttgcccaggctgaaatgcattggtg---at---atacctcactgtaacctctaactcctgggctcaagcaattctcctgcctcagccctccgagtagctaggactacaagtgtgtgcccccacagctgcctaTAATGTCT------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     155904 348 -    383796 aagtcaatatataaataactgtaggctgtttacaaaagccataacttcagtagaagataccaaaaagttgaaaggaaaagggtagaaaagaaataccagacaaacattcat-gaaaaCCACACGGAGATGCCATTTAGAAAAATTACAGGACATGAATCTTCTGAGACATAGAGTCCATGTAGACATCTTACCATGTCTT--TTGA-CCtttttttaagaaacagggtct------attgcccagactgaa-------------------atacctcactgtaacctcagaattctgggctaaagcaattctcctgcctcagccttatgaatagctaggactataggcatgtgccaatacacctggctaTAACATCT------
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         16992070 39597 -  18854210 I
e calJac3.chr4             30202681 75183 + 171630274 I
e manLeu1.NW_012101121v1      36581 1865 +    273075 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=3315438.000000
s hg38.chr6_GL000254v2_alt  1096639 624 +   4827813 CATTTTCTCATTTGCTGTGGTGTGAACAAGGAAACAATATCATACCATGTATTTGACTTGCAGCAGGTACACAACAAATGTCAGGTGAATGAAGAAATAAAACCACTTAGTAATCCAAGCCATATCTACATTTACATTTTACAGGTGAGGAGCAACATCCCAGACAAGTAAAGTAAAATAAATTGATTTACATCATCCAG--AGCAGAATCGAGAACA-------CATTCCCTGTGCTAAAGGAATCAGAACTCTACTAGGGGTCATAGCAGATATCATGCAAGTCACATATGTTAATTACTAGAACAGGAATTGATACATTTCAAGATATACTAAACCAAGGGTTTGGAAGGATTAACTGAATGCAGAAATAAAGGAAGAAAATAGATTTGTTTAAAAGATGGTTAGAATCTTTAAAGAAACAACATCTTTTTAA----AGTGGCCTTATGTGGACCAAAG-CAGA---------------------GATGAGCTCAAATGT-CAGGTGGGAAAATGCTTGA-------CTAAATGCAGC-------------------------------------------------------TCTAGAcccaagggaga-cctaaaaatcctgggacattttcggttgtcacgtggggattggtgggagggggtgagt-ggggtgctgctggcaaacctcccacaatgcacaggacagagca-----caagggat
s panTro5.chr6             30062273 624 + 175400573 CATTTTCTCATTTGCTGTGGTGTGAACAAGGAAACAATACCATGCCATGTATTTGACTTGCAGCAGGTACACAACAAATGTCAGGTGAATGAAGAAATAAAACCACTTAGTAATCCAAGCCATATCCACATTTACATTTTACAGGTGAGGAGCAACATCCCAGACAAGTAAAGTAAAATAAATTGATTTACATCATCCAG--AGCAGAATCGAGAACA-------CATTCCCTGTGCTAAAGGAATCAGAGCTCTACTAGGGGTCATAGCAGATATCATGCAAGTCACATATGTTAATTACTAGAACTGGAGTTGATACATTTTGAGATATACTAAACCAAGGGTTTGGAAGGATTAACTGAATGCAGAAATAAAGGAAGAAAATAGATTTGTTTAAAAGATGGTTAGAATCTTTAAAGAAACAACATCTTTTTAA----AGTGGCCTTATGTGGACCAAAG-CAGA---------------------GATGAGCTCAAATGT-CAGGTGGGAAAATGCTTGA-------CTAAATGCAGC-------------------------------------------------------TCTAGAcccaagggaga-cctaaaaatcctgggacattttcggttgtcacgtggggattggtgggagggggtgagt-ggggtgctgctggcaaacctcccacaatgcacaggacagacca-----caagggat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30292913 624 + 173848474 CATTTTCTCATTTGCTGTGGTGTGAACAAGGAAACAATACCATGCCATGTATTTGACTTGCAGCAGGTACACAACAAATGTCAGGTGAATGAAGAAATAAAACCACTTAGTAATCCAAGCCATATCCACATTTACATCTTACAGGTGAGGAGCAACATCCCAGACAAGTAAAGTAAAATAAATTGATTTACATCATCCAG--AGCAGAATCGAGAACA-------CATTCCCTGTGCTAAAGGAATCAGAGCTCTACTAGGGGTCATAGCAGATATCATGCAAGTCACATATGTTAATTACTAGAACTGGAGTTGATACATTTTGAGATATACTAAACCAAGGGTTTGGAAGGATTAACTGAATGCAGAAATAAAGGAAGAAAATAGATTTGTTTAAAAGATGGTTAGAATCTTTAAAGAAACAACATCTTTTTAA----AGTGGCCTTATGTGGACCAAAG-CAGA---------------------GATGAGCTCAAATGT-CAGGTGGGAAAATGCTTGA-------CTAAATGCAGC-------------------------------------------------------TCTAGAcccaagggaga-cctaaaaatcctgggacattttcggttgtcacgtggggattggtgggagggggtgagt-ggggtgctgctggcaaacctcccacaatgcacaggacagacca-----caagggat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6101300 621 +   6154872 CATTTTCTCATTTGCTGTGGTGTGAACAAGGAAACAATACCATGCCATGTATTTGACTTGCAGCAGGTACACAACAAATGTCAGGTGAATGAAGAAATAAAACCACTTAGTAATCCAAGCCATATCCACATTTACATTTT-CAGGTGAGGAGCAACATCCCAGACAAGTAAAGTAAAATAAATTGATTTACATCATCCAG--AGCAGAATCGAGAACA-------CACTCCCTGTGCTAAAGGAATCAGAGCTCTACTAGGGGTCATAGCAGATATCATGCAAGTCACATATGTTAATTACTAGAACTGGAGTTGATACATTTTGAGATATACTAAACCAAGGGTTTGGAAGGATTAACTGAATGCAGAAATAAAGGAAGAAAATAGATTTGTTTAAAAGATGGATAGAATCTTTAAAGAAACAACATCTTTTTAA----AGTGGCCTTATGTGGACCAAAG-CAGA---------------------GATGAGCTCAAATGT-CAGGTGGGAAAACGCTTGA-------CTAAATGCAGC-------------------------------------------------------TCTAGAcccaagggaga-cctaaaaatcctgggacattttcggttgtcacgtggggattggtggga-ggggtgagt-ggggtgctgct-gcaaacctcccacaatgcacaggacagacca-----caagggat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30397147 613 + 172585720 CATTTTCTCATTTGCTGAGGTGTGATCAAGGAAACAATATCATGCCGTGTATTTGACTTGCAGCTGGTACAC----AATGTCAGGTGAAAGAAGAAATAAAACCATTTAGTAATCCAAGTCATATCCACATTTACATTTTACAGGTGAGGAGCAACATCCCAGAC-----AAGTAAAATAAGCTGATTTACAATATCCAG--AGCAGAATCGAGAACA-------TATTCCCTGTGCTAAAGGAATCAGAGCTCTACCAGGGGTCATAGCAGGTATCATGCAAGTCAGATACGCTAATTACTAGAATGGGAATTGATCCATTTTGAGATATACTAAACAAAGGGTTTGGGAGGATTAATTGAATGCAGAAATAAAGGAATAAAATAGATTTGTTTAAAAGATGGATACAATCTTTAAAGAAACAACTTTTTTTTAA----AGTGACCTTATGTGGACCAAAG-CAGA---------------------GATGAGCTCAAGTGT-CAGGTGGGAAAATGC-----------CTAAGTGCAGCT------------------------------------------------------TCCAGAcccaagggaga-accaaaaatcctgggacattttcggttgtcacgtggggattggtgggagggggtgagtgggggtgctgccggcaaacctcccacaatgcacagggcaggccg-----caagggag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29848742 635 - 170955103 TAGTTTCTTAGTTGCTATGGTGTGATCCATGAAACAATATCATGCCATGTATTTGTCATGCAGTAGGTACACAACAAATACTAGCTGAATGAAGAAATAAAACCACCCAGTAATTCAAGCCACATTCACAATTGTATTTTGCAGATGAAGAGCAACATCCTAGACAAGTAAAGTAAAATAAATTGAATTAGGTCATCCAG--AACAGAATCAGGAACGCACACTCCATTCCCTGTACTCAAGAAATCAGAGCTCTACT-GGGGTAATAGCAGGTATCATGCAGGTCAGATATGCTAATTACTAGAATTAGAATGGACACATTTCAAAATATACTAAAGAAAGGGTGTGGAAGGATTAACTGAATGCAGAGATAAAGGAAGAAAATAGATTTGTTTAAAAGATGGATACAATCTTTAAAGAAAAAATACTTTTTAAAAAAGAGAGGCCTTATTTGGACCAAAG-CAGA---------------------GATGAGCTGAAGTGT-CAGGTGGGAAAATGC-----------CTAAGTGCAGCT------------------------------------------------------TCCAGACCCAAGGGAGA-ACAAAAAATCctgggactttttcggttgtcatgtgggaattggtgggaggggatgagt-ggggtg-tgccaggaaacctcccacgatgcacagggcaggccgctccacaagggag
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     750099 622 +    766320 CATTTTCTCATTTGCTGTGGTGTGATCAAGGAAACAATATCGTGCCATGTATTTGACTTGCAGCAGGTACATAACAAATGTCAGGTGAATGAAGAAATAAAACCATTTAGTAATCCAAGTCATATCCACATTTACGTTTTACAGGTGAGGAGCAACATCCCAGAC-----AAGTAAAATAAGCTGATTTACATCATCCAG--AGCAGAATCGAGAACA-------TATTCCCTGTGCTAAAGGAATCAGAGCTCTACCAGGGGTCATAGCAGGTATCATGCAAGTCAGATACGCTAATTACTAGAATGGGAATTGATACATTTTGAGATATACTAAACAAAGGGTTTGGGAGGATTAATTGAATGCAGAAATAAAGGAAAAAAATAGATTTGTTTAAAAGATGGATACAATCTTTAAAGAAACAACTTTTTTTTAA----AGTGACCTTATGTGGACCAAAG-CAGA---------------------GATGAGCTCAAGTGT-CAGGTGGGAAAATGC-----------CTAAGTGCAGCT------------------------------------------------------TCCAGAcccaagggaga-actaaaaatcctgggacattttcggttgtcacgtggggattggtgggagggggtgagtgggggtgctgccggcaaacttcccacaatgcacagggcaggccgcgccacaagggag
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29232439 616 -  71996105 CATTTTCTCATTTGCTGTGGTGTGATCAAGGAAACAATATCGTGCCATGTATTTTACTTGCAGCAGGTACACAAC-AATGTCAGGTGAATGAAGAAACAAAACCATTTAGTAATCCAAGCCATATCCACATTTACATTTTACAGGTGAGGAGCAACATCCCAGAC-----AAGTAAAATAAACTGATTTACATCATCCAG--AGCAGAATCGAGAACA-------TATTCGCTGTGCTAAAGGAATCAGAGCTCTACCAGGGGTCATAGCAGGTATCATGCAAGTCAGATACGCTAATTACTAGAATGGGAATTGATACATTTTGAGATATACTAAACAAAGGGTTTGGGAGGATTAATTGAATGCAGAAATAAAGGAATAAAATAGATTTGTTTAAAAGATGGATACAATCTTTAAAGAAACAACTTTTTTTTAA----AGTGACCTTATGTGGACCAAAG-CAGA---------------------GATGAGCTCAAGTGT-CAGGTGGGAAAATGC-----------CTAAGTGCAGCT------------------------------------------------------TCCAGAcccaagggaga-actaaaaatcctgggacattttcggttgtcacgtggggattggtgggagggggtgagtgggggtgctgccggcaaacctcccacaatgcacagggcaggcca-----caagggag
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2957155 618 -   3067355 CATTTTCTCATTTGCTGAGGTGTGATCAAGGAAACAATATCGTGCCATATATTTGACTTACAGCAGGTACATAACAAATGTCAGGTGAATTAAGAAATAAAACTATTTAGTAATCCAAGCCATATCCACATTTACATTTTACAGGTGAGGAGCAACATCCCAGAC-----AAGTAAAATAAACTGATTTACATCATCCAG--AGCAGAATTGAGAACA-------TATTCCCTGTGGTAAAGGAATCAGAGCTCTACCAGGGGTCATAGCAGGTACCATGCAAGTCAGATACGCTAATTACTAGAATTGGAATTGATACATTTTGAAATACACTAAACAAAGGGTATGGGATGATTAATTGAATGCAGAAATAAAGGAAGAAAATAGATTTGTTTAAAAGATGGATAGAATTTTTAAAGAAACAACATTTTTTTAAA---AGTGACCTTATGTGGACCAAAG-CAGA---------------------GATGAGCTCAAATGT-CAGGTGGGAAAATGC-----------CTAAGTGCAGCT------------------------------------------------------TCCAGAcccaagggaga-cctaaaaatcccgggacattttcggttgtcatatggggattggtgggagggggtgagtgggggtgctgctggcaaacctcccacaatgcacagggcaggcca-----caagggag
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            20157 629 +    515838 CACCTTCTCATTTGATCTGGTGTGATCAAGAAAGTAACACCATGCCATGTGTTTGACTTGCAGTAAGTGCACAAAAATTATCCAGGGAATGAAGACATAAAACCACTTAGTAATTCAGGCCATATCCACATGTACATTTTACAGATGAAGAGCAACATTTCAAACAAGTAACGTAAAATAAATTGATTTCCATCATCCAG--AGCAGAATTGAGAACA-------CATTCCCTGGGCTAAAGGAACCAGAGCTCTACTAGGGGTCATAGCAGGTATCACCCAAGTCAGATACGCTAGTTACTAGAATTGGAATTGATACATTTCAAGATATACTAAACAAAGAGTGTGGAAGAATTAACTGAATGCAGAGATAAAGGAAAAAAATGCACTTGTTTAAAAGATGCATAGAATCTTTAAAGAAACAAC-TTTTTTAAA----AGTGGCCTTATGTGGACGAAAG-CAGA---------------------GATGAGCTCAAGTGT-CAGGTGGGAAAATACCTGA-------GGAAGGGCAGCT------------------------------------------------------CCTAGACAcaagggaga-cctcaaaatcctgggacatttttggttgtcatattcggattggcgggagagggtgagt-ggggtgctgctggcaaacctcccaaaatgcgcgggacagcccactccacaagggac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     401062 621 -   1771730 AATTTTCTCATCTGATGTGGTGTGATCAAGGAAGCAATATCATGCCATGTATTTGACTTGCAGTAAGTATGCAACATATATCAGGGGAATGAAGAAATAAAACCACTTAGCAGTTCGAGCCATGTTCACATTTACATTTTACAGATGAGGAACAACATCTCAAACAAGTAAAGTAAAATAAACTGATTTACATCATCCAG--AGCAGAATCGAGAACA-------TCTTCCCTGTGCTAAAGTAATCAGAGCTCTACT-GAGGTCATAGCAGGTATCATGAA------------TTGCTACTAGGATTGGAACTGACACATTTCAAGATATACTAAACAAAGGGTGTGCAAGGATTAACTGAATGCAGAGATAAAGGAAGAAAATTGACTTGTTTAAAAGATGGACAGAATC-----------------CTTTTAA----AGTGGCCATATGTGGACCAAAG-CATAAGGCCCACAGACCATGTCATTGGTGAGATGAAGTGT-CAGGTGGGAAAGTGCCTGA-------CTACGTGCAGCT------------------------------------------------------TCCAGATCAAAAGGGGA-TCTAAAAATCctgggatattttcggttgtcatatggggattggtgggaggaggtgagt-ggggtgctcctggcaaagctcccacaatgcacaggactgcccactccacaaggaac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     156252 629 -    383796 CATTTTCTCATTTGATCTGGTGTGATCAAGGAAGTAATATCATGCCATGTATTTGACTTCCAGTAAGTGCACAACAATTATCAGGGGAATGAAGAAATAAAACCGCTTAGTAGTTCAAGCCATATCCACGTGTACATTTTGCCGATGAGGAGCAACATTTGAAACAAATAAAGTATAATAAATTGATTTCCATCATCCAG--AGCAGAATCGAGAGCA-------CATTCCCTGGGCTAAAGGAATCAGAGCTCTACTAGGGGTCATAACAAGTATCACGCAAGTCAGATATGTTAGTTACTAGAATTAGAATTGATACATTTCGAGATATACTAAACAAAGGGGGTGGAAGGATTAACTTAATGCAGAGATAAAGGAAGAAAATGCATTTATTTAAAAGATGGACAGAATCTTTAAAGAAACAAT-CTTTTTTAC----AGTGGCCTTATGTGGACCAAAG-CAGA---------------------GATGAGCTCAAGTGT-CAGGTGGGAAAATGCCTGA-------GGAAGGGCAGCT------------------------------------------------------CCTAGACACAAGGGAGC-CCTTAAAATCctgggacattttcggttgtcatattggagttggtgggagggggtgagt-ggggttctgctggcaaacctcccaaaatgcacgggacagcccactccacaaggtac
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17031667 677 -  18854210 CAGTTTCCCACTGGATCTGGTGTGATCCTTGTAACAATATCATTCCTTGAATTTGACTTGCAGTTAGTGCATAATAAATAGTAGGTAAGTAAAGAAAT-AAACTACTGAGTAATTCAAGTAATATTTGCATCTACATTTTACAGATGAGAAGCAACATCTCAAACAAGTCAAGTA-AATAAATTGGGTTAAGTCAGTCAGACAGCAGAATTGAGGACACA-----CATTCCTTGCCCTAAAGCAATCAGAGCTCTACTGGGGGGGAGAGCAGGTGTCATGTGTGTTAAATATGCTAATTACCAGAATTGGACTTGATACATCTCAGGATATGCTAAA----------GAAAGGATTAATTGAATGCAGAGATAGATGGAGAAAATGGATTTGTTTAAAAGATGAATAGAATCTTTAAGGTCAAAATATAGAGAGAGAAGAAGAGGTCTTATTTGGACCAAAGCCAAA---------------------GATGAGCTGAAGTGTGGAGGTGGTAAAATGCCTGATTCAGACCCCAGTGAGACCCAGGTAAACAGGGTCCTGGCTGGGTCACACATCTGGGCttctccacctgagagatttgggcacaggggacattttgaaaagtcagggacattttctgttctcatgtgggga------------ggtgagt--gggtgctactggcaaaccttctatgaagcacaagacagcccccaccacagagaac
i otoGar3.GL873550         I 39597 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e calJac3.chr4             30202681 75183 + 171630274 I
e manLeu1.NW_012101121v1      36581 1865 +    273075 M
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1719359.000000
s hg38.chr6_GL000254v2_alt  1097263 283 +   4827813 tctctgtctcaaattcttaatagggctgctgttgagaaacc-cGCCCGAgaggtaagtgctgtaatgtcctcaccatttcacagattaagaaactgaggcaccaggaagaaaagtgtcagtaggaccagagctgaaggttgaatccagcccacctggctgcagggtcTTGGCTTCCCTGGTT----AAGTCAG-GGACCCAGGAGCCCACCACAAACAATCCCAGCTGCGCGGT--------------------------------------GCCTTCATGGTCTGT-GGCGCCCCCTGGTGTTGACACTGGGCCTGTGGCCAAATGA
s panTro5.chr6             30062897 284 + 175400573 tctctgtcccaaattcttaatagggctactgttgagaaacc-cGCCCGAgaggtaagtgctgtaatgtcctcaccatttcacagattaagaaactgaggcaccaggaagaaaagtgtcagtaggaccagagctgaaggttgaatccaggccacctggctgcagggtcttggcttccctggtt----aAGTCAG-GGACCCAGGAGCCCACCACAAACAATCCCAGCTGCGCGGT--------------------------------------GCCTTCATGGTCTGTGGGCGCCCCCTGGTGTTGACACTGGGCCTGTGGCCAAATGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30293537 284 + 173848474 tctctgtcccaaattcttaatagggctactgttgagaaacc-cGCCCGAgaggtaagtgctgtaatgtcctcaccatttcacagattaagaaactgaggcaccaggaagaaaagtgtcagtaggaccagagctgaaggttgaatccaggccacctggctgcagggtcttggcttccctggtt----aAGTCAG-GGACCCAGGAGCCCACCACAAACAATCCCAGCTGTGCGGT--------------------------------------GCCTTCATGGTCTGTGGGCGCCCCCTGGTGTTGACACTGGGCCTGTGGCCAAATGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6101921 283 +   6154872 tctctgtcccaaattcttaatagggctgctgttgagaaacc-ctCCCGAgaggtaagtgctgtaatgtcctcaccatttcacagattaagaaactgaggcaccaggaagaaaagtgtcagtaggaccagagctgaaggttgaatccaggccacctggctgca-ggtcttggcttccctggtt----aagtcaG-GGACCCAGGAGCCCACCACAAAAAATCCCAGCTGCGCGGT--------------------------------------GCCTTCATGGTCTGTGGGCGCCCCCTGGTGTTGACACTGGGCCTGTGGCCAAATGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30397760 284 + 172585720 tctctgtcccaaactgttaatagtgctgctgttgagaaacc-cGccccagaggtaagtgctgtagtgtcctcaccatttcaccgattaagaaactgaggcaccaggggggaaactgtcagtaggaccagagctgcaggttgaatccaggccagccggctgcagagtcttggctcCCCTGATT----AAGTCAG-GGACCCGGGAGTCGACCACAAACAATCCCAGCTGCGTGGT--------------------------------------GCCTTCATGGTCTGTGGGCGCCCCCTGGTGTTGACACTGGGCCTGTGGCCAAATGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29849377 280 - 170955103 tctctgtcccaaactgttaatagggctgctgttgagaaacc-cGTCCCAgaggtaagcgcagtaa----ctgtccacttcacagttgaagaaactgaggcacccggagggaaagtgccagtgagaccagagctgcaggttgaagccaggtcatctggctgcagggtccatgctACCCCAGTT----AAGTCAG-GGACCCAGGAGATGACCAGAAACAAGCCCAACTGCATGGT--------------------------------------GCTTGCATGGCCTGTTGGCACCACCTGGTGTTGGTACTGGGCCTATGACTTCATGA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     750721 284 +    766320 tctctgtcccaaactgttaatagtgctgctgttgagaaacc-cGccccagaggtaagtgctgtagtgtcctcaccatttcaccgattaagaaactgaggcaccaggaagaaaagtgtcagtaggaccagagctgcaggttgaatccgggccacctggctgcagagtcttggctcCCCTGATT----AAGTCAG-GGACCCGGGAGCCGACCACAAACAATCCCAGCTGCCTGGT--------------------------------------GCCTTCATGGTCTGTGGGCGCCCCCTGGTGTTGACACTGGGCCTGTGGCCAAATGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29233055 284 -  71996105 tctctgtcccaaactgtttatagtgctgctgttgagaaacc-cGccccagaggtaagtgctgtagtgtcctcaccatttcaccgattaagaaactaaggcaccaggaagaaaagtgtcagtaggaccagagctgcaggttgaatccgggccacctggctgcagggtcttggctcCCCTGATT----AAGTCAG-GGACCCCGGAGCCGACCACAAACAATCCCAGCTGAGTGGT--------------------------------------GCCTTCATGGTCTGTGGGCGCCCCCTGGTGTTGACACTGGGCCTGTGGCCAAATGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      38449 322 +    273075 TCtctgtcccaaactgttaatagtgctgctgttgagaaacc-caccccagaggtaagtgctgtagtgtcctcaccatttcaccgattaagaaactgaggcaccaggaagaaaagtgtcagtaggaccagagctgcaggttgaatccaggccacctggctgtagggtcttggctcCCCTGATT----AAGTCAG-GGACGCGGGAGCCTACCACAAACAATCCCAGCTGAGTGGTGCCTTCATGGTCTGTGGGCGCCTTCATGGTCTGTGGGCGCCTTCATGGTCTGTGGGCGCCCCCTGGTGTTGACACTGGGCCTGTGGCCAAATGA
i manLeu1.NW_012101121v1   M 1865 C 0
s colAng1.NW_012115566v1    2957773 284 -   3067355 tgtctgtcccaaactattaatagtgctgctgttgagaaacc-cGccccagaggtaagtgctgtagtgtcctcaccatttcaccgattaagaaactgaggcaccaggaagaaaagtgtcagtacgaccagagctgcaggctgaatccaggccacctggctgcagggtcttggctcCCCTGATT----AAGTCAG-GGACCCGGGAGCCGAGCCCAAACAATCCCAGCTGCGTGGT--------------------------------------GCCTTCATGGTCTGTGGGCGCCCCCTGGTGTTGACACTGGGCCTGTAGCCAAATGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            20786 268 +    515838 tctctgccccaaatggttaacagtgctgctgttgagaaacc-cGCGCCAgaagtaagtgctgtaatgtcctcaccatttcacagatttaaaaactgaggcagcaggaggaaaagtctcagtaggaccagagctgcaagttgaatccaggcggcctggctgcaaagtcttggctt-tCTGCTT------GTCGG--------------TATCACAGACAATCCTGTCTGCGCGGT--------------------------------------GCCTTTATGGTCTTTGGGCGCCCCCTGGTGTTGACACTAGGCCTGTGGCTAAATGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     401683 269 -   1771730 tctctgtcccaaattgttaatagtgctgc---taagaaact-caccccagaggtaagtgctgtaatgtcctcaccatttcacagatgaagaaactgaggcacctggagggaaagtgtcagtaggactagagctgcaggttgaatccaggccagctggctgccgggtcgtagctc-CCTGGTT----AAATCAG-GGAACCAGAAACCCACCTTAAACAATCC---CTG----------------------------------------------CTTCATGGTCTGTGGGCGCCCCCTGGTGTTGGTACTGGGCCTGTGGCTAAAAGA
i cebCap1.NW_016107755v1   C 0 I 11
s aotNan1.NW_018496904v1     156881 270 -    383796 tctctgtaccaaatggttaacagtgctgccattgagaaacc-TGAGCCAgaagtaagtgctgtaatgtcctcaccacttcacagatttaaaaactgaagcaccaggaggaaaagtgtcagtaggaccagagctgcaagttgaatccaggcggcctggctgcaaagtcTTGCCTT-CCTGGTT----AAGTCAG--------------TATCACAGACAATCCTGGCTGTGCGGT--------------------------------------GCCTTCATGGTCTTTGTTCGCCCCCTGGTGTTGACACTAGGCCTGTGGCTAAATGA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17032344 269 -  18854210 tctctggcccaaagcgttaata-tgtccatgctgagaatccACatcctggaggtaggtgctgca-tgttctcaccatctca--gatgaagaagctgaggcaccaagagg-aaagtgccagagagaccagagctccgaggtgaatctaggccgcctggctagagagtctgtgtccccccaaccCAGGAATTCAGTGGCCTCCAGAGCTGACCATAAACAAACCCCA------GGT----------------------------------------------GATCTGTGGGCACCATCTGCT-TTCGCCCTGGG-CTGTGGTCTCATGT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e calJac3.chr4             30202681 75183 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=134032.000000
s hg38.chr6_GL000254v2_alt  1097546 39 +   4827813 ----------------GGCTTGAGGGA------------AAAGG---AAA--------AC-GG---------GTTTAGGTAG-------------------CGGGAT
s panTro5.chr6             30063181 39 + 175400573 ----------------GGCTTGAGGGA------------AAAGG---AAA--------AC-GG---------GTTTAGGTAG-------------------CGGGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30293821 39 + 173848474 ----------------GGCTTGAGGGA------------AAAGG---AAA--------AC-GG---------GTTTAGGTAG-------------------CGGGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6102204 39 +   6154872 ----------------GGCTTGAGGGA------------AAAGG---AAA--------AC-GG---------GTTTGGGTAG-------------------CGGGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30398044 40 + 172585720 ----------------GGTTTGAGAGA------------AAAGG---AAAC-------AC-AG---------GTTTGGGTAG-------------------CGGGAT
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29849657 71 - 170955103 ----------------GGCTTGCGGGAGGCGGGGGCGGTGAAGA---AAAA-------TC-AG---------GTTTGGGTAAGAAATCTTTGTATCCTCTCAGGGAT
i macFas5.chr4             C 0 I 1
s cerAty1.NW_012002711v1     751005 40 +    766320 ----------------GGCTTGAGAGA------------AAAGG---AAAC-------AC-AG---------GTTTGGGTAG-------------------CGGGAT
i cerAty1.NW_012002711v1   C 0 I 1
s chlSab2.chr17            29233339 41 -  71996105 ----------------GGCTTGAGGGA------------AAAGGA--AAAA-------AC-AG---------GTTTGGGTAG-------------------CGGGAT
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012101121v1      38771 40 +    273075 ----------------GGCTTGAGAGA------------AAAGG---AAAC-------AC-AG---------GTTTGGGTAG-------------------CGGGAT
i manLeu1.NW_012101121v1   C 0 I 1
s colAng1.NW_012115566v1    2958057 41 -   3067355 ----------------GGCTTGAGAGA------------AAAGG---AAAC-------AAGAG---------GTTTGGGTAG-------------------CGGGAT
i colAng1.NW_012115566v1   C 0 I 1
s saiBol1.JH378341            21054 43 +    515838 ----------------GCCTTGCGGGA------------AAAGGCAAAAAA-------AC-AG---------CTTTGGGTAG-------------------AAAGAT
i saiBol1.JH378341         C 0 I 1
s aotNan1.NW_018496904v1     157151 41 -    383796 ----------------GCCTTGTTGGA------------AAAGGC--AAAA-------AC-AG---------CTTTGGGTAG-------------------GGAGAT
i aotNan1.NW_018496904v1   C 0 I 1
s otoGar3.GL873550         17032613 69 -  18854210 GATTAGGGGTGGGGGTGGAATGAGGTA------------AAAGA---AAACCTGACCAAC-AGCAATGAATTAATTGGGTAG-------------------GAA---
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e cebCap1.NW_016107755v1     401952 11 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=763824.000000
s hg38.chr6_GL000254v2_alt  1097585 137 +   4827813 CTCCT---TCAGGCTCTCCAGATTTCAAGCCATGACTTACACTCAG--AAAAAATAATGTTCACCTTAATTATCTCCCCAACCCTGTTTTTCCCAGTTCCGGCCAGTACCCTCCCTCGACTCCATCAACATCAGTACCTGCC
s panTro5.chr6             30063220 137 + 175400573 CTCCT---TCAGGCTCTCCAGATTTCAAGCCATGACTTACACTCAG--GAAAAATAATGTTCACCTTAATTATCTCCCCAACCCTGTTTTTCCCAGTTCCGGCCAGTTCCCTCCCTCGACTCCATCAACATCAGTACCTGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30293860 137 + 173848474 CTCCT---TCAGGCTCTCCAGATTTCAAGCCATGACTTACACTCAG--GAAAAATAATGTTCACCTTAATTATCTCCCCAACCCTGTTTTTCCCAGTTCCGGCCAGTTCCCTCCCTCGACTCCATCAACATCAGTACCTGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6102243 136 +   6154872 CTCCT---TCAGGCTCTCCAGATTTCAAGCCATGACTTACACTCAG--AAAAAATAATGTTCGCCTTAATTATCTCCCCAA-CCTGTTTTTCCCAGTTCCGGCCAGTTCCCTCCCTCGACTCCATCAACATCAGTACCTGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30398085 136 + 172585720 GTCCT---TCAGGCTCTCCAGATTTCAAGCCATGACTTGCAGTCAG---AAAAATAATGTCCGCCTTAATTATCTATCCAACCCTGTTTTTCCCAGTCCCGTCCAGTTCCCTCCCTCGACTCCATCAACATCAGTACATGCC
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29849729 141 - 170955103 CTCCTTCCTCAGGCTCTCCAGATTTCAAGCTATGACTT-CGCTCAGAAAAAAAATAATATCCACATTGATTCTCCCTCCCACCTCACTTTTCCCAGCCCTCACCAATCTCCTCCTGTGACTCCATCAACATCAGCAACTCCC
i macFas5.chr4             I 1 I 5849
s cerAty1.NW_012002711v1     751046 137 +    766320 GTCCT---TCAGGCTCTCCAGATTTCAAGCCATGACTTACACTCAG--AAAAAATAATGTCCGCCTTAATTATCTGTCCAACCCTGTTTTTCCCAGTCCCGTCCAGTTCCCTCCCTCGACTCCATCAACATCAGTACCTGCC
i cerAty1.NW_012002711v1   I 1 C 0
s chlSab2.chr17            29233381 137 -  71996105 GTCCT---TGAGGCTCTCCAGATTTCAAGCCATGACTTACACTCAG--AAAAAATAATGTCTGCCTTAATTATCTATCCAGCCCTGTTTTTCCCAGTCCCGTCCAGTTCCCTCCCTCGACTCCATCAACATCAGTACCTGCC
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012101121v1      38812 137 +    273075 GTCCT---TGAGGCTCTCCAGATTTCAAGCCATGACTGACACTCAG--AAAAAATAATGTCCGCCTTAATTATCTGTCCAACCTTGTTTTTCCCAGTCCCCTCCAGTTCCCTCCCTCGACTCCATCAACATCAGTACCTGCC
i manLeu1.NW_012101121v1   I 1 C 0
s colAng1.NW_012115566v1    2958099 136 -   3067355 CTCCT---TCAGGCTCTCCAGATTTCAAGCCATGATTTACACTCAG---AAAAATAATGTCCGCCTTAATTATCTCTCCAACCCTGTTTTTCCCAGTCCCGTCCAGTACCCTCCCTCGACTCCATCAATATCAGTACCTGCC
i colAng1.NW_012115566v1   I 1 C 0
s saiBol1.JH378341            21098  96 +    515838 CACCT---TCAGGCCCTCCGCATTTCAAGCCATGACTTACACTCAG--AAAAAATAATGTCCGCCCTAATTACCTCTCCAATCCTG-CTTTCCCAGTCCCTG----------------------------------------
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     401963 137 -   1771730 CTCCT---TCAGCCTCTCCAGATTTCAAGCCAAAACTAAAGCTCAC--AGAAAATAATGTCCACCTTAATTATCTCTCCAACCCTGTTTTTCCCAGTCCCAGGAAGTTTCCGCCCTCTACTCCATCAACATTGTCACCTGCC
i cebCap1.NW_016107755v1   I 11 C 0
s aotNan1.NW_018496904v1     157193 136 -    383796 CACCT---TCAGGCCCTCCACATTTCAAGACATGACTTACGCTCAG--AGAAAATAATGTCTGCCTTAATTATCTCTCAAACCCTG-CTTTCCCAGTCCCGGCCAGTGTCCTCCCTCGACTCCATCAACATCAGCACCTGCC
i aotNan1.NW_018496904v1   I 1 C 0
s otoGar3.GL873550         17032682 126 -  18854210 TAACC---TCAGGCTATCCAGATTTTATGCCATGACGTAAGCTCAG--AAAAAACAA------ACTCAATTCTCCCATCCACCCTGCTTTTCTCACCCCTAGCAG--CCTCTTCCTACACTCCAACAA---GGGTGCCTTCC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e calJac3.chr4             30202681 75183 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=222764.000000
s hg38.chr6_GL000254v2_alt  1097722 44 +   4827813 AGATGCCCAGCACCCACCATGTGAGGAGTGAAAATGCCCCAGGA
s panTro5.chr6             30063357 44 + 175400573 AGATGCCCAGCACCCACCATGTGAGGAGTGAAAATGCCCCAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30293997 44 + 173848474 AGATGCCCAGCACCCACCATGTGAGGAGTGAAAATGCCCCAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6102379 44 +   6154872 AGATGCCCAGCACCCACCATGTGAGGAGTGAAAAGGCCCCAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30398221 44 + 172585720 AGATGCCCAGCACCCACCATGTGAGGAGTGAAAAGGCCCCAGGA
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002711v1     751183 44 +    766320 AGATGCCCGGTACCCACCATGTGAAGAGTGAAAAGGCCCCAGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29233518 44 -  71996105 AGATGCCCAGCACCCACCATGTGAGGAGTGAAAAGGCCCCAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      38949 44 +    273075 AGATGCGCAGTACCCACCATGTGAGGAGTGAAAAGGTCCCAGGA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2958235 44 -   3067355 AGACGCCCAGCACCCACCATGTGAGGAGTGAAAAGGCCCCAGGA
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     402100 44 -   1771730 TGACGCACAGCACCTACCATGTGAGGAGTGAAAATGTCCCAGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     157329 44 -    383796 AGATGCCCACCACCCACCATGTGAAGAGTGAAAAGGCCCCAGGA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17032808 42 -  18854210 CTGTGCTGACCATCCACTCTGTG--GAGTGAAAGGGCCTCAGAA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            21194  0 +    515838 C
e calJac3.chr4             30202681 75183 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29849870 5849 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=118746.000000
s hg38.chr6_GL000254v2_alt  1097766 30 +   4827813 ----CTAAAGGACAAGATGAC-GTTCCACCCCAGC
s panTro5.chr6             30063401 30 + 175400573 ----CTAAAGGACAAGATGAC-GTTCCACCCCAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30294041 30 + 173848474 ----CTAAAGGACAAGATGAC-GTTCCACCCCAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6102423 30 +   6154872 ----CTAAAGGACAAGATGAC-GTTCCACCCCAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30398265 29 + 172585720 ----CTAAAGGACAAGGCGAG-TTTCCA-CCCAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29855719 29 - 170955103 ----CTGAAGGAAAAGTATGG-TCCCAC-CCCAGT
i macFas5.chr4             I 5849 C 0
s cerAty1.NW_012002711v1     751227 29 +    766320 ----CTAAAGGACAAGACGAG-GTTCCA-CTCAGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29233562 29 -  71996105 ----CTAAAGGACAAGATGAG-GTTCCA-CCCAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      38993 29 +    273075 ----CTAAAGGACAAGACGAG-GTTCCA-CCCAGT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2958279 30 -   3067355 ----CTAAAGGACAAGACGAG-GTTCCACCCCAGC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            21194 17 +    515838 -----------------CCAG-TTTCCATCCCAGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     402144 30 -   1771730 ----CTAAAGGACAAGACTAG-TTTCCATCTCAGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     157373 30 -    383796 ----CTAAAGGACAAGACTAG-GTTCCATCCCAGC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17032850 35 -  18854210 CAAGACATGGGAAGAACCGAGTGCCCTACCCCAAC
i otoGar3.GL873550         C 0 I 68161
e micMur3.chr6               240797 2210 + 123392446 T
e calJac3.chr4             30202681 75183 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=170460.000000
s hg38.chr6_GL000254v2_alt  1097796 32 +   4827813 CATCCCGCCCCTCC-TAGAGCTCTAGCTCTGTG
s panTro5.chr6             30063431 32 + 175400573 CATCCCGCCCCTCC-TAGAGCTCTACCTCTGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30294071 32 + 173848474 CATCCCGCCCCTCC-TAGAGCTCTAGCTCTGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6102453 31 +   6154872 CATCCCG-CCCTCC-TAGAGCTCTAGCTCTGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30398294 32 + 172585720 CATCCCTCCCTTCC-TAGAGCTCTAGCTCTGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29855748 33 - 170955103 GATCTCTCCCTTCCTTGGAGCTCTATCTGTATG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     751256 32 +    766320 CATCCCTCCCTTCC-TAGAGCTCTAGCTCTGTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29233591 32 -  71996105 CATCCCTCCCTTCC-TAGAGCTCTAACTCTGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      39022 32 +    273075 CATCCCTCCCTTCC-TAGAGCTCTAACTCTGTG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2958309 31 -   3067355 CATCCCTCCC-TCC-TAGAGCTCTAACTCTGTG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            21211 26 +    515838 CATCCCTCCTTTCC-CAG------AGCTCTGTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     402174 32 -   1771730 CATCCCTCCCCTCC-CAGAGCTCTAGCTCTGTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     157403 32 -    383796 CATCCCTCCCCTCC-CAGAGCTCTAGCTCCATG
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17032885 68161 -  18854210 I
e calJac3.chr4             30202681 75183 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1980242.000000
s hg38.chr6_GL000254v2_alt  1097828 320 +   4827813 CATTT----AGTGCTTAGGCTTTT--AACCTGGGGTCCGCGAACCCACTTTCCCATGACACTGCGTGCAGAAG-TGATGTTACATGCACACATGACTTCATTACAGGACATTGGATATTAATATTCATCCGATCAACTGGGGGCCCAAGATACCACTCTTCCCCCAACAGTTTGTGATCCTCTGAATTAAAGAAAGGGCAGAGATTGAGGGAGGCCCTAACTCCAAATCTTCTACCACTTCTAGGGAAGTGCTGAAAAGAAGTGCAAGGTACTCAACCCGCTCTGGGAATACAGCAGGAAAGCAGAGTGTTCATGGATTTCGAATTC
s panTro5.chr6             30063463 320 + 175400573 CCTTT----AGTGCTTAGGCTTTT--AACCTGGGGTCCGCGAACCCACTTTCCCATGACACTGCGTGCAGAAG-TGATGTTACATGCACACATGACTTCATTACAGGACATTGGATATTAATATTCATCCGATCAACTGGGGGCCCAAGATACCACTCTTCCCCCAACAGTTTGTGATCCTCTGAATTAAAGAAAGGGCAGAGATTGAGGGAGGCCCTAACTCCAAATCTTCTACCACTTCTAGGGAAGTGCTGAAAAGAAGTGCAAGGTACTCAACCCGCTCTGGGGATACAGCAGGAAAGCAGAGTGTTCATGGATTTCGAATTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30294103 320 + 173848474 CCTTT----AGTGCTTAGGCTTTT--AACCTGGGGTCCGCGAACCCACTTTCCCATGACACTGCGTGCAGAAG-TGATGTTACATGCACACATGACTTCATTACAGGACATTGGATATTAATATTCATCCGATCAACTGGGGGCCCAAGATACCACTCTTCCCCCAACAGTTTGTGATCCTCTGAATTAAAGAAAGGGCAGAGATTGAGGGAGGCCCTAACTCCAAATCTTCTACCACTTCTAGGGAAGTGCTGAAAAGAAGTGCAAGGTACTCAACCCGCTCTGGGGATACAGCAGGAAAGCAGAGTGTTCATGGATTTCGAATTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6102484 317 +   6154872 CCTTT----AGTG-TTAGGCTTTT--AACCTGGGGTCCGCGAACCCACTTTCCCATGACACTGCGTGCAGAAG-TGATGTTACATGCACACATGACTTCATTACAGGACATTGGATATTAATATTCATCCGATCAACTGGGGGCCCAAGATACCACTCTT-CCCCAGCAGTTTGTGATCCTCTGAATTAAAGAAA-GGCAGAGATTGAGGGAGGCCCTAACTCCAAATCTTCTACCACTTCTAGCGAAGTGCTGAGAAGAAGTGCAAGGTACTCAACCCGCTCTGGGGATACAGCAGGAAAGCAGAGTGTTCATGGATTTCAAATTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30398326 320 + 172585720 CCTTT----AGTGTTTAGGCTCTT--AACCTGGGGTCCACGAACCCACTTTCCTGTGACACTGCATGCAGAAG-TGATGTTACATGCACACATGACTTCATTACAGGACATTGGATATTAATATTCATCAGATCAACGGCGGGCCCAAGACACTACTCTTCCCCCAACAGTTTGTGATCCTCTGAATTAAAGAAAAGGTAGAGATTGAGGGAGGCCCTAACTCCAAATTTTCTACCACTTCTAGGGAAGTGCTGAAAAGAAGTGCAAAGTACTCAACCCGCTCTGGGGATACACCGGGAAGGCAGAGGGTTGATGGATTTCAAATTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29855781 318 - 170955103 CCTGT----AGTGCTTATGCCCTT--AACCTGGGGTCCAGGAACCCACCTTCCCATGAGACTGCATGCAGAAG-TGATGATATGTGCACACATGACTTCATTACAGGGCATTGGATATTGATATTCATCAGGTCAGTTG-GGGCCCAAGACACCACTCTTCTGCCAACAGGCCACAATCCTCTACATTAGGCAGAGGGTAAAGATTGAGGGAGGCCCTAACTTGAAACCTTCCACCACTGCTAGTGAAGTGCTGAAAAGAAGTGCAACGTCATTTGCCCCTGTAGGAAACACA-AAGGAAAGCAGAGTGTCCACGAATGTCAAATTC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     751288 320 +    766320 CCTTT----AGTGTTTAGGCTCTT--AACCTGGGGTCCGCGAACCCACTTTCCTGTGACACTGCATGCAGAAG-TGATGTTACATGCACACATGACTTCATTACAGGACATTGGATATTAATATTCATCCTATCAACGGGGGGCCCAAGACACCACTCTTCCCCCAATAGTTTGTGATCCTCTGAATTAAAGAAAAGGTAGAGATTGAGGGAGGCCCTAACTCCAAATCTTCTACCACTTCTAGGGAAGTGCTGAAAAGAAGTGCAAAGTACTCAACCCGCTCTGGGGATACACTGGGAAGGCAGAGGGTTGATGGATTTCAAATTC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29233623 320 -  71996105 CCTTT----AGTGTTTAGGCTCTT--AACCTGGGGTCCGCGAACCCACTTTCCTGTGACACTGCATGCAGAAG-TGATGTTACATGCACACATGACTTCATTACAGGACACTGGATATTAATATTCATCCGATCAACGGGGGGCCCAAGACACCACTCTTCCCCCAACAGTTTGTGATCCTCTGAATTCAAGAAAAGGTAGAGATTGAGGGAGGTCCTAACTCCAAATCTTCTACCACTTCTAGGGAAGTGCTGAAAAGAAGTGCAAAGTACTCAGCCCGCTCTGGGGATACACCGGGAAGGCAGAGGGTTGATGGATTTCAAATTC
i chlSab2.chr17            C 0 I 743
s manLeu1.NW_012101121v1      39054 320 +    273075 CCTTT----AGTGTTTAGGCTGTT--AACCTGGGGTCCGCGAACCCACTTTCCTGTGACACTGCATGCAGAAG-TGATGTTACATGCACACATGACTTCATTACAGGACATTGGATATTAATATTCATCCGATCAACGGGAGGCCCAAGACACCACTCTTCCCCCAATAGTTTGTGATCCTCTGAATTAAAGAAAAGGTAGAGATTGAGGGAGGCCCTAACTCCAAATCTTCTACCACTTCTAGGGAAGTGCTGAAAAGAAGTGCAAAGTACTCAACCCGCTCTGGGGATACACCGGGAAGGCAGAGGGTTGATGGATTTCAAATTC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2958340 320 -   3067355 CGTTT----AGTGCTTAGGCTCTT--AACCTGGGGTCCGCGAACCCACTTTCCTATGACACTGCATGCAGAAG-CGATGTTACATGCACACATGACTTCATTACAGGACACTGGATATTAATATTCATCCGATCAACGGGGGGCCCAAGACATCACTCTTCCCCCAACAGTTTGTGATCCTCTGAATTAAAGAAAAGGGAGAGATGGAAAGAGGCCCTAACTCCAAATCTTTTACCACTTCTAGGGAAGTGCTGAAAAGAAGTGCAAAGTACTCAACCCGCTCTGGGGATACACCGGGAAGGCAGAGGGTTGATGGGTTTCAAATTC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            21237 322 +    515838 CCTGTAGTGAGTGCTTAGGCTCTT--AACTTGGGGCCCAGGAACCCACTCTCCCATGACACTGCGTGCAGAAG-TGATGTTGTGTGCACATGTGACTTCCTCACAGGACATTGAATAGTAACAATAATCAGATCAGGAG-GGGCACAAG-CACAGTTCTTCCCCCAACAGCTCGTGATCCTCTGAATTAAAAAAAGGATAGAGCCTGAGAGAGGCCCTAGCTTCAAATCTTGTACCACTCCTAGTGACGTTCTGAAAAGAAAAGCAAGTTACTCACCCTGCTCTGGGTATACAGCAGGAAAGCAGAGTGCTCATGGATTTCAAATTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     402206 319 -   1771730 CCAGT----AGTGCTTAGGCTCTT--AACCTGGGGCCCAGGAACCCACTCTCCCATGACACTGCATGCAAAAG-TGATCTTATGTGCACACGTGACTTCATTACAGGACATTGGATATTAATACTCATCAGGACAGCCG-GAGCTCAAGACACCACTCTTCTCCCAACAACTTGTGATCCTCTGAATTAAAGAAAGGGTGGAGCTTGAGGGAGGCCCTAACTCCAAGTCTTCTACCACGGCTAATGAAGTTCTAAAAAGAAGTGCAAGTTACTCAATCTGCTCTGGGGATAGAGCAGGAAAGCAGAGTGTTCATGGATTTCAAATTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     157435 319 -    383796 CCTCT----AGTGCTTAGGCTCTT--AACCTGGGGCCCAGGAACCCACTCTCCCATGACACTACATGCAGAAG-TGATGTTATGTGCACATGTGACTTCCTCACAGGACATTGAATATTAATATTAATCAGATCAGGAG-GGGCACAAGACACAATTCTTCCCCCAACAGCCTGTGATCCTCTGAATTAAAGAAAGGGTAGATATCAAGGGAGGCCCTAGCTCCAAATCTTGTACCACTCCTAGTGATGTTCTGAAAACAAGAGCAAGGTACTCACCCTGCTCTGGGTATACAGCAGGAAAGTAGAGTGTTCATGGATTTCAAATTC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17101046 295 -  18854210 CATCC----ATGACTTATGCCCTTAAAACCTGGGG-CCAGGAACCCACTCTCCTT-----CTGCATGCAGAAGTTGGTGTTATGTATACCTGTGACTTTACTACTGGACAGTGGACATGGATAGGCTTCATGTCAGCAG-GGGTCCA--------CTGCTCCCCC---ATGCTATGATCCTCTTCAGT--AGATAGATTAGACATTGATAGGAACTTTAAGTTCAAATCCTCCACCACTCATAG--------TGAAAAGAATCACAAGGTAGTCCATCCCCTCTAGGAGCCAGGCAAGGAAAGAGAATGTCCATGAATATGAAATTC
i otoGar3.GL873550         I 68161 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e calJac3.chr4             30202681 75183 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=973288.000000
s hg38.chr6_GL000254v2_alt  1098148 196 +   4827813 CATCAAAGAAATACAACTTTGGCAAAATATCCAAGTCACTTTTCTAAGCCCCAGGCAGCAGCT------------------------------------caaa-acaaacaacaccaaaaaca---aaacaaaaTCTCTGCCCAGGTGAAATCATTGAA----GAC---ATAAAACTTTGTGAGACCTGTATTTAGAGCGAA-GGACAATTCAATTTAGGG--------CTGCAGCAG---AAAACCCCTACATC
s panTro5.chr6             30063783 196 + 175400573 CATCCAAGAAATACAACTTTGGCAAAATATCCAAGTCACTTTTCTAAGCCCCAGGCAGCAGCT------------------------------------caaa-acaaacaacatcaaaaaca---aaacaaaaTCTCGGCCCAGGTGAAATCATTGAA----GAC---ATAAAACTTTGTGAGACCTGTATTTAGAGCAAA-GGACAATTCAATTTAGGG--------CTGCAGCAG---AAAACCCCTACATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30294423 196 + 173848474 CATCCAAGAAATACAACTTTGGCAAAATATCCAAGTCACTTTTCTAAGCCCCAGGCAGCAGCT------------------------------------caaa-acaaacaacatcaaaaaca---aaacaaaaTCTCGGCCCAGGTGAAATCATTGAA----GAC---ATAAAACTTTGTGAGACCTGTATTTAGAGCAAA-GGACAATTCAATTTAGGG--------CTGCAGCGG---AAAACCCCTACATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6102801 193 +   6154872 CATCAAAGAAATACAACTTTGGCAAAATATCCAAGTCACTTTTCTAAGCCCCAGGCAGTAGCT------------------------------------C-aa-acaaacaacatcaaaaaca---aaacaaaaTCTCGGCCCAGGTGAAATCATTGAA----GAC---ATAAAACTTTGTGAGACCTGTATTTAGAGCGAA-GGACAATTCAATTTAGGG--------CTGCAGCGA---AAA--CCCTACATC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30398646 196 + 172585720 CATCAAAGAAATACAATTTTGGCAAAATATCCAAGTCACTTTTCTAAGCCCCGGGCAGCAGCT------------------------------------caaa-acaaacaacaccaaaaaca---aaacaaaGTATCGGCCCAGGTGAAATCATTGAA----GCT---ATAAAACTTTGTGAGACCTGTAGTTACAGAGAA-GGACAATTCAATTTAGGG--------GTGCAGCAG---AAAACCCCTACATC
i rheMac8.chr4             C 0 I 966
s macFas5.chr4             29856099 196 - 170955103 CACCAAAGAAATAACATTTTGACAAAACATGTAAGTCACCTTTCTAAGACCCAGACAGCAGCT------------------------------------CAAA-ATAAAAAGCATGAAACCC------CCCAAATCTTAGCCCAGGTGAAATTATTGAA----GCTGCAGTAAGGCCTTGTGGGACCTGCAGTTAGAGAGAAGGGATAACTCAATTTGGGA--------CTGCAGCAG----AAACCCCTACATC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     751608 196 +    766320 CATCAAAGAAATACAATTTTGGCAAAATATCCAAGTCACTTTTCTAAGCCCCGGGCAGCAGCT------------------------------------caaa-acaaacaacaccaaaaaca---aaacaaaGGATCGGCCCAGGTGAAATCATTGAA----GCT---ATAAAACTTTGTGAGACCTGTAGTTACAGAGAA-GGACAATTCAATTTAGGG--------GTGCAGTAG---AAAACCCCTACATC
i cerAty1.NW_012002711v1   C 0 I 996
s manLeu1.NW_012101121v1      39374 196 +    273075 CATTAAAGAAATACAATTTTGGCAAAATATCCAAGTCACTTTTCTAAGCCCCGGGCAGCAGCT------------------------------------caaa-acaaacaacaccaaaaaca---aaacaaaGTATCGTCCCAGGTGAAATCATTGAA----GCT---ATAAAACTTTGTGAGACCTGTAGTTACAGAGAA-GGACAATTCAATTTAGGG--------GTGCAGCAG---AAAACCCCTACATC
i manLeu1.NW_012101121v1   C 0 I 965
s colAng1.NW_012115566v1    2958660 196 -   3067355 CATCAAAGAAATACAATTTTGGCAAAATATCCAAGTCACTTTTCTAAGCCCTGGGCAGCAGCT------------------------------------caaa-acaaacaacatcaaaaaca---aaacaaaGTATCGGTCCAGGTGAAATCATTGAA----GCT---ATAAAACTTTGTGAGACCTGTAGTTACTGAGAA-GGACAATTCAATTTAGGG--------GTGCAGCAG---AAAACCCCTACATC
i colAng1.NW_012115566v1   C 0 I 972
s saiBol1.JH378341            21559 235 +    515838 CGTTAAATAAATATCATTTTGGCAAAATATCCAAGTCACTTCTCTAAGCCCCAACCAGAAGCTCTAACAAACAACATCAAAAAAACCcaaacaaacaaacaaa-acaaacaaacaaaaaaacaaacaaacaaaAGTTGGGCCCAGGTGAAACCATTGAA----ACT---ATAAAACTTTGTGACACCTTCAGTTAGAAAGAA-GGACAGTACAATTTAGGG--------CTGCAGCAG---AAAACCTCTACATC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     402525 201 -   1771730 CATCAAAGAAATACTATTTTGGCAAAATATCCAAGTCACTTTTCTAAGCCCCAGGTAGCAGCT------------------------------------CAAA-ACAAACAATGTAGAAA------AAGCAAAATATCGGCCCAGGTGAAATCACTGAA----GCT---ATAAAACTTTGTGAGACCTGTAGTTAGAAAGAA-GGACAATTTAATTTCTGGACAATTTAATTAAACAG---AAAACCTCTACTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     157754 192 -    383796 CATTAAAGAAATATCATTTTGGCAAAATATCCAAGTCACTTCTCTAAGCCCCAACCAGAAGCTCT-------------------------------------A-ACAAACAACATCAGAA------AAACAAAAGTTGGGCCCAGGTGAAACCATTGAA----GCT---ATAAAACTTGGTGAGACCTTCAGTTAGAAAGAA-GGACATTGCAATTTAGGG--------CTGCAGCAG---AAAACCTCTATATC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17101341 194 -  18854210 CATCAAAGAAATACCATTATAGCAAAATAGTCA-------TTTTCAAACCCCAGGCAGCAGCT------------------------------------AAAATACAAACACCGGTAAATCCC------CCCAACCTTAGTCCAGGTGAGATCATTGGAGTTGGCT---GTAAGGATTTGTGGGACCTGTAGTTGGAGAGAA-AGACAATACAATTTAGGA--------GTGCAGCAGGAAAAAAACCCTACAAC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e calJac3.chr4             30202681 75183 + 171630274 I
e chlSab2.chr17            29233943 743 -  71996105 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=4329127.000000
s hg38.chr6_GL000254v2_alt  1098344 740 +   4827813 ATATTGGGTTTTTCCTCATCATGAAGTTCTCCTGGAGGGACCTTCTCCCTTCAGCAGTGCATAGTGAGGCCATTTCTGTGTAAAAAGATAGAATCTCCTTGGATTCCTGATGTT-----TACATTTACTACTCACTTCTTTGACTTTGTAGATGCCAACTTCACATTCAACATCTTTCAATTA-------------TTTTCTTTAC----TTTGTCTAAGCAGAGAATTTAAACTTGTTTCTGAAGCAGAAAAC---CAGGGACTGGTTATTTGAGCTATCGCCCCACTCTGTGGCTCTCTTATGCAAT----------------------------------------------------AAGCATAAGAGATTGTGGGCCAACAGAATTTGTA-GCAAGATAAACAT-AAACCCTTCATTTCAGCCTATGTTTCTGTTTGTCTGGTGATGTTCCAGTCTTGCTCCAGTCTTAACATTTTAAAAAGTATAATTTT-ACTTAAATTTCATTTTATAGGAAGTCATATATATTCATTTCTGTTAGGTTTCTCAGTGAAAGCCTCCTCAAAACAACTGTGAAGTAAAGACATGTAAATAAATTCATGGTGCTcccatgtattcatgctcattgcatcttacaaatgtgtcagccccactgcaacagatggtgcatcaacaaatggtgctggaaacctggatatccacatgcaaaaga-------------atgatgctggacaaaatttatgcccttccat------------tacac-------------------------------------------------------------------------------ccttttca------------------------------------------------------------------------------------aaaattaag---------tcagaatgccttaaagaactaatcttaagagttaaacctgtaaaactcttaa
s panTro5.chr6             30063979 740 + 175400573 ATATTGGGTTTTTCCTCATCATGAAGGTCTCCTGGAGGGACCTTCTCCCTTCAGCAGTGCATAGTGAGGCCATTTCTGTGTAAAAAGATAGAATCTCCTTGGATTCCTGATGTT-----TACATTTACTACTCACTTCTTTGACTTTGTAGATGCCAACTTCACATTCAACATCTTTCAATTA-------------TTTTCTTTAC----TTTGTCTAAGCAGAGAATTTAAACTTGTTTCTGAAGCAGAAAAC---CAGGGACTGGTTATTTGAGCTATCACCCCACTCTGTGGCTCTCTTATGCAAT----------------------------------------------------AAGCATAAGAGATTGTGGGCCAACAGAATTTGTA-GCAAGATAAACAT-AAACCCTTCATTTCAGCCTATGTTTCTGTTTGTCTGGTGATGTTCCAGTCTTGCTCCAGTCTTAACATTTTAAAAAGTATAATTTT-ACTTAAATTTCATTTTATAGGAAGTCATATATATTCATTTCTGTTACGTTTCTCAGTGAAAGCCTCCTCAAAACAACTGTGAAGTAAAGACATGTAAATAAATTCATGGTGCTCCCATGTATTCGTGCTCATTGCATCTTACAAATGTGTCAGCCCCACTGCAACAGATGGTGCAtcaacaaatggtgctggaaacctggatatccacatgcaaaaga-------------atgatgctggacaaaatttatgcccttccat------------tacac-------------------------------------------------------------------------------ccttttca------------------------------------------------------------------------------------aaaattaag---------tcagaatgccttaaagaactaatcttaagagttaaacctgtaaaactcttaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30294619 740 + 173848474 ATATTGGGTTTTTCCTCATCATGAAGGTCTCCTGGAGGGACCTTCTCCCTTCAGCAGTGCATAGTGAGGCCATTTCTGTGTAAAAAGATAGAATCTCCTTGGATTCCTGATGTT-----TACATTTACTACTCACTTCTTTGACTTTGTAGATGCCAACTTCACATTCAACATCTTTCAATTA-------------TTTTCTTTAC----TTTGTCTAAGCAGAGAATTTAAACTTGTTTCTGAAGCAGAAAAC---CAGGGACTGGTTATTTGAGCTATCACCCCACTCTGTGGCTCTCTTATGCAAT----------------------------------------------------AAGCATAAGAGATTGTGGGCCAACAGAATTTGTG-GCAAGATAAACAT-AAACCCTTCATTTCAGCCTATGTTTCTGTTTGTCTGTTGATGTTCCAGTCTTGCTCCAGTCTTAACATTTTAAAAAGTATAATTTT-ACTTAAATTTCATTTTATAGGAAGTCATATATATTCATTTCTGTTACGTTTCTCAGTGAAAGCCTCCTCAAAACAACTGTGAAGTAAAGACATGTAAATAAATTCATGGTGCTCCCATGTATTCGTGCTCATTGCATCTTACAAATGTGTCAGCCCCACTGCAACAGATGGTGCAtcaacaaatggtgctggaaacctggatatccacatgcaaaaga-------------atgatgctggacaaaatttatgcccttccat------------tacac-------------------------------------------------------------------------------ccttttca------------------------------------------------------------------------------------aaaattaag---------tcagaatgccttaaagaactaatcttaagagttaaacctgtaaaactcttaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6102994 743 +   6154872 ATATTGGGTTTTTCCTCATCATGAAGGTCTCCTGGAAGGACCTTCTCCCTTCAGCAGTGCATAGTGAGGCCATTTCTGTGTAAAAAGATAGAATCTCCTTGGATTCCTGATGTT-----TACATTTACTACTCACTTCTTTGACTTTGTAGATGCCAACTTCACATTCAACATCTTTCAATTA-------------TTTTCTTTACTTTGTTTGTCTAAGCAGAGAATTTAAACGTGTTTCTGAAGCAGAAAAC---CAGGGACTGGTTATGTGAGCTATCACCCCACTCTGTGGCTCTCTTATGCAAT----------------------------------------------------AAGCATAAGAGATTGTGGGCCAACAGAATTTGTAGGCAAGATAAACAT-AAACCCTTCATTTCAGCCTATGTTTCTGTTTGTCTGGTGATGTTCCAGTCTTGCTCCAGTCTTAACATTTTAAAAAGTATAATTTT-ACTTAAATTTCATTTTATAGGAAGTCATATATATTCATTTCTGTTAGGTTTCTCAGTGAACGCCCCCTCAAAACAACTGTGAAGTAAAGACAGGT-AATAAATGCATGGTGCT-CCATGTATTAATGCTCACTGCATCTTACAAATGTGTCAGCCCCACTGCAACAGATGGTGCAtcaacaaatggtgctggaaacctggatatccacatgcaaaaga-------------atgatgctggacaaaattcacgcccttccat------------tacac-------------------------------------------------------------------------------ccttttca------------------------------------------------------------------------------------aaaattaag---------tcagaatgccttaaagaactaatcttaagagttaaacctgtaaaactcttaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30399808 729 + 172585720 ATATAGGGTTTTTCCTCATCATGAAGGTCCCCTGAAGGGACCTTCTCCCTTTAGCAGTGCATAGTGAGGCCATTGCTGGGTAAAAAGATAGAATCTCCTT-GATTCCTGATGTT-----TACATTTACTACTCACTTCTTTGACTTTGTAGATGCCAATTTC------GACATCTTTCGGTTA-------------TTTTCCTTAC----TCTGTCTAAGCAGAGGATTTAAACTTGTTTCCAAAGCAGAAAAT---CAGGGACTGGTTA--TGAGCTATCACCCCACTTTGTGGCTGTCTTATGCAAT----------------------------------------------------AAGCACAAGAGATCGTGGGCCAACAGAATGTGTA-GCAAGGTAAACAA-AAACTCTTCATTTCAGCCTATATTTCTCTTTGTCTGATGACATTCTAGTCTTGCTCCAGTCTTAACATTTTAAAACATATAATTTT-GCTTAAATTTCATTTTATAGGAAGTCATATATATTCATTTCTGTTGCGTTTGTCAGTGAAAGCCTTCTCAAAACAACTGTGGAGGAAAGACAGGTAAATAAATGCATGGTGCTCCCATGTGTTAGTGCTCACTGCATCTCACCAATGTGTCAGCCCCACTGCAACACATGGTGCAtcaacaaatggtgctggaaacctggatatccacatgcaaaaga-------------atgatgctagagagaattcatgcccttccat------------tacac-------------------------------------------------------------------------------ccttttca------------------------------------------------------------------------------------aaaattaag---------tcagaatgactcaaagaactaaccttaagtgttgaacttgcaaaaccctt--
i rheMac8.chr4             I 966 C 0
s macFas5.chr4             29856295 727 - 170955103 --GTGGGGTT-------------------CCCGGAAGGTACCCTCTCCCTTCAGGGACACATTATGAGGCCATTTCTAGGTAAAAAGGTAGAATCTTCTTAGATTCCTGAGGTTTATTGTACACTTACTGCTTA-TTCTTTGACTTTATAGAAGCCAGCTTCAGTTTGAGCATCTTGCAATTAAAttttttttttttttttttttt----tAGCTCTAAGTGGAGAATTGGAACTTGTTTCTGA---AGAAAAC---CAGGGACTTGTTACGTGAGCAAGCACCCCTCCCTGTGGCTCCCTTATGCAAT----------------------------------------------------AAACATAAGCCATTGTGAGCCAGCAAAATTTATA-GCAAGGAAAGCAGTAAACCCTCCATTTCAGC--ATGTTTCAGCTTGTCTAGTGATGTTCTAGTCTTGCCTCACTCTCAACATTTTAAAATTTATAatttt-atttgattttgatttcataagaattcatatgtattcatttcttttgGGTTCGTCACCAAAAGCCTTCTCCAATCAACTGTGGAGTAAAGACAAGTAAATAAATGTATGGTGTTCACATGTATTAGTGCTCACTGCATCTTACAAGTGTGTCAGCCCCACttcagctgatggtac--------------caggaaacctcaatatccacatacaaaata-------------atgatgttggacaaaattcgtagcatcacct------------tacac-------------------------------------------------------------------------------catattca------------------------------------------------------------------------------------aaaattaatgcaattaactcagaatggttcaaggaactcaacttaggagttaaacctataaatcttttag
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     752800 735 +    766320 ATATAGGGTTTTTCGTCATCATGAAGGTCCCCTGAAGGGACCTTCTCCCTTTAGCAGTGCATAGTGAGGCCATTGCTGTGTAAAAAGATAGAATCTCGTT-GATTCCTGATGTT-----TACACTTACTACTCACTTCTTTGACTTTGTAGATGCCAATTTTACATTCGACATCTTTCGGTTA-------------TTTTCCTTAC----TCTATCTAAGCAGAGAATTTAAACTTGTTTCTGAAGCAGAAAAC---CAGGGACTGGTTA--TGAGATATCACCCCACTTTGTGGCTCTCTTATGCAAT----------------------------------------------------AAGCACAAGAGATCGTGGGCCAACAGAATTTGTA-GCAAGGTAAACAC-AAACCCTTCATTTCAGCCTATATTTCTCTTTGTCTGGTGAGGTTCTAGTCTTGCTCCAGTCTTAACATTTTAAAACATATAATTTT-GCTTAAATTTCATTTTATAGGAAGTCATATATATTCATTTCTGTTGGGTTTCTCAGTGAAAGCCTTCTCAAAACAACTGTGGAGGAAAGACAGGTAAATAAATGCATGGTGCTCCCATGTGTTAGTGCTCACTGCATCTCACAAATGTGTCAGCCCCACTGCAACACATGGTACAtcaacaaatggtgctggaaacctggatatccacatgcaaaaga-------------atgatactggagagaattcatgcccttccat------------tacac-------------------------------------------------------------------------------ccttttca------------------------------------------------------------------------------------aaaattaag---------tcagaatgactcaaagaactaaccttaagagttgaacttgtaaaatcctt--
i cerAty1.NW_012002711v1   I 996 C 0
s chlSab2.chr17            29234686 715 -  71996105 ATATAGGGTTTTTCCTCATCATGAAGGTCCTCTGAAGGGACCTTCTCCCTTTAGCAGTGCATAGTGAGGCCATTGCTGTGTAAAAAGATAGAATCTCCTT-GATTCCTGATGTT-----TACATTTACTACTCACTTCTTTGACTTTGTAGATGCCAATTTT------GACATCTTTCGGTTA-------------TTTTCCTTAC----TCTATCCAAGCAGAGGATTTAAACTCGTTTCTGAAGCAGAAAAC---CAGGGACTGGTTA--TGAGCTATCACCCCACTTTGTG----------GCAAT----------------------------------------------------AAGCATAAGAGATCGTGGGCCAACAGAATGTGTA-GCAAGGTAAACAT-AAACTCTTCATTTCAGCCTATATTTCTCTTTGTCTGGTGACGTTCTAGTCTTGCTCCAGTCTTAACATTTTAAAACATATAATTTT-ATTTAAATTTCATTTTATAGGAAGTCATATATATTCATTTCTGTTGGGTTTGTCAGTGAAAGTCTTCTCAAAACAACTGTGGAGGAAAGACAGG----TAAATGCACGGTGCTCCCATGTGTTAGTGCTCACTGCATCTCACAAATGTGTCAGCCCCACTGCGACATACGGTGTAtcaacaaatggtgctgggaacctggatatccacatgcaaaaga-------------atgatgctggagaaaattcatgcccttccat------------tacac-------------------------------------------------------------------------------ccttttca------------------------------------------------------------------------------------ataattaag---------tcagaatgactcaacgaactaaccttaagagttgaacttgtaaaaccctt--
i chlSab2.chr17            I 743 C 0
s manLeu1.NW_012101121v1      40535 729 +    273075 ATATAGGGTTTTTCCTCATCATGAAGGTCCCCTGAAGGGACCTTCTCCCTTTAGCAGTGCATAGTGAGGCCACTGCTGTGTAAAAAGATAGAATCTCCTT-GATTCCTGATGTT-----TACATTTACTACTCACTTCTTTGACTTTGTAGATGCCAATTTC------GACATCTTTCGGTTA-------------TTTTCCTTAC----TCTGTCTAAGCAGAAGATTTAAACTTGTTTCTAAAGCAGAAAAC---CAGGGACTGGTTA--TGAGCTATCACCCCACTTTGTGGCTGTCTTATGCAAT----------------------------------------------------AAGCACAAGAGATCGTGGGCCAACAGAATTTGTA-GCAAGGTAAACAA-AAACTCTTCATTTCAGCCTATATTTCTCTTTGTCTGATGACATTCTAGTCTTGCTCCAGTCTTAACATTTTAAAACATATAATTTT-GCTTAAATTTCATTTTATAGGAAGTCATATATATTCATTTCTGTTGGGTTTGTCAGTGAAAGCCTTCTCAAAACAACTGTGGAGGAAAGACAGGTAAATAAATGCATGGTGCTCCCATGTGTTAGTGCTCACTGCATCTCACCAATGTGTCAGCCCCACTGCAACACATGGTGCAtcaacaaatggtgctggaaacctggatctccacatgcaaaaga-------------atgatgctggagagaattcatgcccttccat------------taaac-------------------------------------------------------------------------------ccttttca------------------------------------------------------------------------------------aaaattaag---------tcagaatgactcaaagaactaaccttaagtgttgaacttgtaaaatcctt--
i manLeu1.NW_012101121v1   I 965 C 0
s colAng1.NW_012115566v1    2959828 735 -   3067355 ATATAGGGTTTTTCCTCATCAAGAAGGTCCCCTGAAGGGACCTTCTCCCTTTAGCAGTACATAGTGAGGCCATTGCTGTGTAAAAAGATAGAATCTCCTT-GATTCCTGACGTT-----TACATTTACTACTCACTTCTTTGACTTTGTAGATGCCAATTTCACATTCGACATCTTTCAGTTA-------------TTTTCCTTAC----TCTATCTAAGCAGAGGATTTAAACTTGTTTCTGAAGCAGAAAAC---CAGGGACTGGTTA--TGAGCTATCACCCCACTTTGTGGCTCTCTTATGCAAT----------------------------------------------------AAGCATAAGAGATCGTGGGCCAACAGAATTTGTA-GCAAGGTAAACAT-AAACTCTTCATTTCAGTCTATATTTCTCTTTGTCTGGTGATGTTCTAGTCTTGCTCCAGTCTTAACATTTTAAAACATATAATTTT-ACTTAAATTTCATTTTATAGGAAGTCATATATATTCATTTCTGTTGGGTTTGTCAGTGAAAGCCTTCTCAAAACAACAGTGGAGGAAAGACAGGTAAATAAATGCATGGTGCTCCCATGTGTTAGTGCTCACTGCATCTCACAAATGTGTCAGCCCCACTGCAACACATGGTGCAtcaacaaatggtgctggaaacctggatatccacatgcaaaaga-------------atgatgctggacaaaattcatgcccttccat------------tacac-------------------------------------------------------------------------------gcttttca------------------------------------------------------------------------------------aaaataaag---------tcagaatgactcaaataactaaccttaagagttgaacttgtaaaacccat--
i colAng1.NW_012115566v1   I 972 C 0
s saiBol1.JH378341            21794 735 +    515838 ATATAGGGATTTTCTTCATCATGAAGGTTCCCTGAAGGGACCTGCTCCCTTCAGCAATGCAGAGTGAGGCCATTTCTGTGTAAAAAGATACAATCTCCTTGGCTTCCTGATGTT-----GACACTTGCTACTCAC-TGTCCGACTTTGTAGATGCCAACTTCACATTCAACATCTTCCCATTC-------------ATTTTCTTAC----TCTGTCTAAGCAGAGAATTTGAAATTGTTTCTGAAGCAGAAAAC---CAGGGACTGGTTATGTGAGCTCTCACCCCACCCTGTGGCTCTCTTATGTAAT----------------------------------------------------AAGCAT-AGAGATGGTGGGTCAACAGAATGTGCA-GCAAGGTGAACAT-CAGCCCTCCATTTCAGCCTATGTTT-GGCTTTTCTAGTGATGTTCTAGTCTTGCTCCAGTCTTAGCATTTTAGTATTTATAATTTT-ACTTGAATTTTATTTTATAGAAAGTCATATGCATGTATTTCTTCTGGG-TTGTCAGTGAAAACCTTCTCAAAACAACTCTTGAGTGAAGACAGGTAAATAAACGCCTGGTGCTCCCATGTATTAGTGCTCAGTGCATCTTACAAATGGATCAGCCCCACTCCAGCAAGTGGTGttttaacaaatggtgctggaaacctggatagccacatgcaaaaga-------------atga-gagcagaaaaattcttgcccctctgt------------tacac-------------------------------------------------------------------------------cctataca------------------------------------------------------------------------------------aaaattaca---------tcagaatggcttaaagaactaaccttaagagttaaacctgtaaaactcttaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     402726 750 -   1771730 ATATAGGAATTTTCTTTATCATGAAGGTCCCCTGTAGGGACCTGCTCCCTTCTGCAGTGCATAGTGAGGCCATTTCTGTGTAAAATGTTAGACTCTCCTTGGATTTCTGATGCT-----GACACTTACTACTCAC-TCTCTGACTTTGTATATGCCAATTTCACATTCGACATCTTTCAGCTA-------------ATTTTC-TAC----TCTGTTTAAGCAGAGAATTTAAAATTATTTCTGAAGCAGAAAAC---CAGGGACTTGTTATGTAAGCTCTCACCCCAAAGTGTGGCTCTCTTATGTAAT----------------------------------------------------AAGCATAAGAGATTGTAGTCCAACGGAATTTGTA-GTAAGGTAAATAT-AAAACCTCCGTTTCAG-CTATGTTTCAGCTTGTCTGCTGATGTTTTAGTCTTGCTCCAGTCTTAACATTTTAAAATTTACAATTTTAACTTGAATTTGATTTCATAAGAAGTAATAT-TATTCATTTCTGTTGGGTTTGTCAGTGAAAGCCTTCTCAAAACAACTATGGAAGAAAGACAAGTAAATAAATGCTTGGTGCTCCCATGTGTTAGTGCTCACTGCATCTTACAAATGGATCAGCCCCACTCCAACACATAGGGCAtcaacaaatggtgctggaaacctggactttcatgtgcaaaacacctggatttccacatgatgctcgacaaaattcacaccctcccat------------tacac-------------------------------------------------------------------------------ccttttca------------------------------------------------------------------------------------aaaattaag---------tcagaatgactcaaagatgtaaccttaagagttgtacctgtaaaacccttaa
i cebCap1.NW_016107755v1   C 0 I 1456
s aotNan1.NW_018496904v1     157946 747 -    383796 ATACAGGGATTTTCTTCATCATGAAGGTTACCTGAAGGGACTTGCTCCCTTCAGCAATGCAGAGTGAGGCCATTTCTCTGTCAAAAGATACAATCTCCTTGGATTCCTGATGTT-----GACACTTACTACTCTC-TGTCCGACTTTGTAGATGCCAACTTCACATTCAACATCTTTCAGTTA-------------ATTTTCTCAC----TCTGCCTAAGCAGAGAATTTGAAATTGTTTCTGAAGCAGAAAAC---CAGGGACTGGTTATGTGAGCTCTCACCCCACCCTATGTCTATCTTATGCAGT----------------------------------------------------AAGCTT-AGAGATGGCAGGCCAACAGAATGTGTA-GCAAGGTAAACAT-AAACCCTCCAATTCAGTCTATGTTT-GGCTTTTCTAGTGATGTTCTAGTCTTGCTCCAGTCTTAGCattttaatatttataatttt-acttgaattttattttaTAGGAAGTCATATGCATGTATTTCTGCTGGG-TTGTCAGTGAAAACCTTCTCAAAACAACTCCAGAGAAAAGACAGGTAAATAAATGCATGGTGCTCCCATGTATTACTGCTCAGTGCATCTAACAATTGGATCAGCCCCACTGCAACACATGGTGttttaacaaatggtgctggaaacctggacatccacatgcaaaaga-------------atga-taatagaaaaaatcttgcccttctattacacccagtactacac-------------------------------------------------------------------------------cctgtaca------------------------------------------------------------------------------------aaaattttg---------tcagaatggcttaaagaactaaccttaagagttaaacctgtaaaactcttaa
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17101535 916 -  18854210 --ATGGGG-------------------TCCTCTGAAGGGTCCCTATCCCTTCAGCAATGCATAGTGAGGCCCTTTCTGGG--ATTAAGTAGAGCCTCATTGGCTGCCTGAGGTT-----GACACTGACTGCTTAC-TCACTGACTTTGTAGATGCCAACTTCATGTTGAACATCTTGCAATCA-------------CTTTTCTGAC--------TCTAAGTGGAGAATTTGAACCTGTTTCTGAAGTAGGAAACTGGTAGAAACTGGTTATATGAGCTATCTCCTCACCCTGTGACTCTCTTATGTAGTTATAATCTGTTATAACATAATTCCTCTCTTATGCAATTATAATCTCTTATTATAACATAAGAGACTGTAAGCCAAAAAACTTTGTA-GGGAGATAAGCAGGAAACTCTCCATGTCAGC--ATGTTTCAGGGTGTCTAGTAATGTTCTAGCCCTGCCCTAATCTTAACAGTTTAAAATTTATAATGTC-ACTTGATGTTGATTTTATAAG-ATTCATGTCTGTTTGTTTCTATTGTATCTATTCCCGTGAACCTCCTCAGAACTACTGTGGAGGAGAGATGAGTAAGTGAAGGCTCGGTGCTCCC-TGTGTTAGTGCTCCCCGCACCT----------TCACCCCAGCTTCAGCAATGGGGGcttcagcagagggc-tgggaaacctgtatgtccacatggaaaata-------------atgatgttggacaaaaccttcatccttacct------------tacaccaGGCATTCTCAAACTATGGATGCGGCTCACCCAGGACATTTATCCAGCCTGCCGGGTGTTTTTGCCGCTGCTGCCTGTCCttttaaactatagtccggccctccaacggtctgaaggacagtgaactggccccctgtttaaaaagtttgaggacccctacaccatacttcaaaattaac---------tcagaatggatcaaagaactaaacttaagagctgaatttataaaactgcaaa
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e calJac3.chr4             30202681 75183 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=675522.000000
s hg38.chr6_GL000254v2_alt  1099084 138 +   4827813 aagaaaatactgagggaaagtcttatggtcattagaattggtagtggtttcttggctg-gtgaccaaaagtacaagcaataaaaggaaaatgacaaataagacttcatcaaaatgt-----------aaaa-acttttttgcatcaaagga
s panTro5.chr6             30064719 138 + 175400573 aagaaaagactgcgggaaagtcttatggtcattagaattggtagtggtttcttggctg-gtgaccaaaagtacaagcaataaaaggaaaatgacaaataagacttcatcaaaatgt-----------aaaa-acttttttgcatcaaagga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30295359 138 + 173848474 aagaaaagactgcgggaaagtcttatggtcattagaattggtagtggtttcttggctg-gtgaccaaaagtacaagcaataaaaggaaaatgacaaataagacttcatcaaaatgt-----------aaaa-acttttttgcatcaaagga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6103737 136 +   6154872 aag-aaatactgagggaaagtcttatggtcattagaattggtagtggtttcttggctg-gtgaccaaaagtacaagcaataaaaggaaaatgacaaataagactt-atcaaaatgt-----------aaaa-acttttttgcatcaaagga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30400537 136 + 172585720 aagaaagcactga-ggaaaatcttatggacattagaattggtagtggtttcttgactg-gtgaccaaaagcacaagtaataaaagaaaaatgac-aattagacttcatcaaaatgt-----------aaaa-acttttttgcatcaaagga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29857022 136 - 170955103 aagaaaacattga-agaaaatcttaggaacgttggatgtggcaatggcttcttggctg-atgagcaaaagcaaaaccaataaaagaaaaacaataaattagact--atcaaaattt-----------aaaaccctttttcatatcaaaaga
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     753535 136 +    766320 aagaaagcactga-ggaaaatcttacggacattagaattggtagtggtttcttggctg-gtgaccaaaagcccaagtaataaaagaaaaatgac-aattagacttcatcaaaatgt-----------aaaa-acatttttgcatcaaagga
i cerAty1.NW_012002711v1   C 0 T 96468
s chlSab2.chr17            29235401 136 -  71996105 aagaaagcactga-ggagaatcttatggacattagaattggtagtgatttcttggctg-gtgaccaaaagcacaagtaataaaagaaaaatgac-aattagatttcatcaaaatgt-----------aaaa-acttttttgcatcaaagga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      41264 136 +    273075 aagaaagcactga-ggaaaatcttatggacattagaattggtagtggtttcttgactg-gtgaccaaaagcacaagtaataaaagaaaaatgac-aattagacttcatcaaaatgt-----------aaaa-acttttttgcatcaaagga
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2960563 136 -   3067355 aagaaagcactga-ggaaaatcttatggaaattagaattggtagtggtttcttggctg-gtgaccaaaagcacaagtaataaaagaaaaatgac-aattagtcttcatcaaaatgt-----------aaaa-acttttttacatcaaagga
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            22529 135 +    515838 aaggaaatgctga-ggaaagtcttagggacattagaattggtagcggtttcttggcag-ttaa-caaaagcataa-taataaaagaaaaatggcaaattagactctttcaaaatgt-----------aaaa-acttttttacttcaaatga
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     158693 135 -    383796 aagaaaatgctga-ggaaaatcttacagacattagaattgctagtggtttcttagcag-gtaa-caaaagcatga-taataaaagaaaaatggcaagttaggctctatcataaggt-----------aaaa-acttttttacatcaaataa
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17102451 148 -  18854210 gagaaaacattga-ggaaaactctatggatgctgcgattg-cagtagtttcttggctgaatgactaaaagcacaagcaatacaagaaaaatgataaattagacttcatcaaaattttaaagagtgaaaaga-aaatgcaagaatgaaagga
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=37542.000000
s hg38.chr6_GL000254v2_alt  1099222 9 +   4827813 cgctattaa-
s panTro5.chr6             30064857 9 + 175400573 cgctattaa-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30295497 9 + 173848474 cgctattaa-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6103873 9 +   6154872 tgctattaa-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30400673 9 + 172585720 cactattaa-
i rheMac8.chr4             C 0 N 0
s macFas5.chr4             29857158 9 - 170955103 cactattaa-
i macFas5.chr4             C 0 I 1
s chlSab2.chr17            29235537 9 -  71996105 cactattaa-
i chlSab2.chr17            C 0 N 0
s manLeu1.NW_012101121v1      41400 9 +    273075 cactattaa-
i manLeu1.NW_012101121v1   C 0 I 2555
s colAng1.NW_012115566v1    2960699 9 -   3067355 cgctattaa-
i colAng1.NW_012115566v1   C 0 I 1
s saiBol1.JH378341            22664 9 +    515838 cactattaa-
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     158828 9 -    383796 cactattaa-
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17102599 9 -  18854210 -aatatttgc
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e cerAty1.NW_012002711v1     753671 96468 +    766320 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=-4106.000000
s hg38.chr6_GL000254v2_alt  1099231  3 +   4827813 gag-----------
s panTro5.chr6             30064866  3 + 175400573 tag-----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30295506  3 + 173848474 tag-----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6103882  3 +   6154872 gag-----------
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29857168  3 - 170955103 aga-----------
i macFas5.chr4             I 1 C 0
s colAng1.NW_012115566v1    2960709  3 -   3067355 aga-----------
i colAng1.NW_012115566v1   I 1 C 0
s saiBol1.JH378341            22673  3 +    515838 gag-----------
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     158837  3 -    383796 gag-----------
i aotNan1.NW_018496904v1   C 0 I 1
s otoGar3.GL873550         17102608 14 -  18854210 aaatcatgtatctg
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e cerAty1.NW_012002711v1     753671 96468 +    766320 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=11328.000000
s hg38.chr6_GL000254v2_alt  1099234  9 +   4827813 gtgaaaaga-----------
s panTro5.chr6             30064869  9 + 175400573 gtgaaaaga-----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30295509  9 + 173848474 gtgaaaaga-----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6103885  9 +   6154872 gtgaaaaga-----------
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29857171  9 - 170955103 gttaaaaga-----------
i macFas5.chr4             C 0 C 0
s colAng1.NW_012115566v1    2960712  9 -   3067355 ggcaaaaga-----------
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018496904v1     158841  9 -    383796 gtgaaaaga-----------
i aotNan1.NW_018496904v1   I 1 I 14
s otoGar3.GL873550         17102622 18 -  18854210 --gtaaagaatcaatatcca
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            22676  0 +    515838 C
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e cerAty1.NW_012002711v1     753671 96468 +    766320 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=12390.000000
s hg38.chr6_GL000254v2_alt  1099243 15 +   4827813 ggctaggcgcagtgg
s panTro5.chr6             30064878 15 + 175400573 ggctaggcgcagtgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30295518 15 + 173848474 ggctaggcgcagtgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6103894 15 +   6154872 ggctaggcgcaatgg
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29857180 15 - 170955103 aaatacacggaatgg
i macFas5.chr4             C 0 I 2190
s colAng1.NW_012115566v1    2960721 15 -   3067355 aaatgcacagaataa
i colAng1.NW_012115566v1   C 0 I 31
s otoGar3.GL873550         17102640 15 -  18854210 gactgggcatggtga
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            22676  0 +    515838 C
e aotNan1.NW_018496904v1     158850 14 -    383796 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e cerAty1.NW_012002711v1     753671 96468 +    766320 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=279072.000000
s hg38.chr6_GL000254v2_alt  1099258 304 +   4827813 ctcacgcctgtaatcccagcactttgggaggccaaagtgggtggatcacctgaggtcaggagttcgaaatcagcctggccaacatggcaaaaccctgtctctactaaaaatac-aaaaattagccgggcgcagtggtgggcacctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcaatgagctgagattgcaccattgcactccagctggggcatcagagagagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtgaa
s panTro5.chr6             30064893 294 + 175400573 ctcatgcctataatcccagcactttggg-ggccaaagtgggtggatcacctgaggtcaggagttcgaaattagcctggccaacatggcaaaaccctgtctctactaaaaatac-aaaaattagccgggcgcagtggtgggcacctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcaatgagctgagattgcaccattgcactccagccggggcatcagagagagactccgtctc---------aaaaaaaaaaaaaaaaaaggacagtgaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30295533 294 + 173848474 ctcatgcctataatcccagcactttggg-ggccaaagtgggtggatcacctgaggtcaggagttcgaaattagcctggccaacatggcaaaaccctgtctctactaaaaatac-aaaaattagccgggcgcagtggtgggcacctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcaatgagctgagattgcaccattgcactccagccggggcatcagagagagactccgtctc---------aaaaaaaaaaaaaaaaaaggacagtgaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6103909 300 +   6154872 ctcacacctgtaat-acagcactttgggaggccaaagtgggtggatcacctgaagtcaggagttcgaaatcagcctggccaacatggcaaaaccctgtctctactaaaaatac-aaaaattagccgggcgcagtggtgggcacctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcaatgagccgagattgcaccattgcactccagcctgggcatcagagagagactccgtctc--aaaaaaaaaaaaaaaaaaaaaaaaaagaca-tgaa
i gorGor5.CYUI01015250v1   C 0 C 0
s colAng1.NW_012115566v1    2960767 277 -   3067355 ctcaagcctgtaatcccagcactttgggaggccgaggcgggcggatcac--aaggtcaggagatccagac------------cacggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcgcggttgcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgggaacccgggaggcggagcttgtagtgagccgagatcgcgccactgcactccagccagggagacagagcgagactccgtctc---------aaaaaaaaaaaaaaaaaaagaga-----
i colAng1.NW_012115566v1   I 31 C 0
s otoGar3.GL873550         17102655 276 -  18854210 ctgatgcctgtaatcctaccactctgggtcacccaggtgggtgaatcacctgagcttaggagtgtgagaccagtatgagcaaga--gtaagaatccatctatattaaaaatag-aaaaactagctgggcgtggtggtgcatgcctgtagctccagctatttgggaggctgaggcaagag-atcacttgagctcattagtttgaggttgatgtgagctttgat---accatggcactttaaccagagtgacagagtgagactctttcct---------aaaagagaaaaaaaa-------------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            22676   0 +    515838 C
e aotNan1.NW_018496904v1     158850  14 -    383796 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e cerAty1.NW_012002711v1     753671 96468 +    766320 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29857195 2190 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=21160.000000
s hg38.chr6_GL000254v2_alt  1099562 28 +   4827813 aat-aaaagaaactgcatagaataagata
s panTro5.chr6             30065187 28 + 175400573 aat-aaaagaaactgcatagaataagata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30295827 28 + 173848474 aat-aaaagaaactgcatagaataagata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6104209 28 +   6154872 aat-aaaagaaactgcatagaataagata
i gorGor5.CYUI01015250v1   C 0 C 0
s saiBol1.JH378341            22676 29 +    515838 aatgaaaagaaaatgcacagaataggagg
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17102931  0 -  18854210 C
e aotNan1.NW_018496904v1     158850 14 -    383796 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961044  0 -   3067355 C
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e cerAty1.NW_012002711v1     753671 96468 +    766320 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29857195 2190 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1176063.000000
s hg38.chr6_GL000254v2_alt  1099590 670 +   4827813 aaatatttgccaatcacatatctgataaagaattaatatccagactacatacagaactacaacttaacaatagca-------aaacaatctcattcaaaaatgggtaaaagacatgaat------agacaattctccagagaagatacacagtaaggacataaaaataaggaattccaataaggacatgaaaatatgctcagcttcactagtccaggtgttggtgaggatgtggagaaaatggaatgcttgtgcactgctgctgagagtgaacaacagtgcagccatcatgg-aaacaggatgacgctttctcaagaaggtaaacatagaatttccatatgaagca------------------------------------------acaattccacttttgggtgtataccccccaaaaattgaaagcaggtatgcacacagataattgtacagtcatgctcatagcagtgctattcccaatagccaaaaggtggacg----caacccaagtgtccatcagaggatgattggaaaaacaaaatgtg------------------------gtgcatatacacatggaatattaatcagccttaaaagtgaagaatatttggat-------------tggatggaaccttgaaaacacgctaaataaaataagccaaa---aaaaaggcaaatatgat---atttcacttatatgaggcacctagaataagcaaattcacaaaaacagaaagtagaatacaggttaccaggg
s panTro5.chr6             30065215 670 + 175400573 aaatatttgccaatcacatatctgttaaagaattaatatccagactacatacagaactacaacttaacaatagca-------aaacaatctcattcaaaaatgggtaaaagacatgaat------agacaattctccagagaagatacacagtaaggacataaaaataaagaattccaataaggacatgaaaatatgctcagcttcactagtccaggtgttggtgaggatgtggagaaaatggaatgcttgtgcactgctgctgagagtgaacaacagtgcagccaccatgg-aaacaggatgatgctttctcaagaaggtaaacatagaatttccatatgaagca------------------------------------------acaattccacttttgggtgtatacccccccaaaattgaaagcaggtatgcacacagataattgtacagtcatgctcatagcagtgctattcccaatagccaaaaggtggacg----caacccaagtgtccatcagaggatgattggaaaaacaaaatgtg------------------------gtgcatatacacatggaatattaatcagccttaaaagtgaagaatatttggat-------------tggatggaaccttgaaaacatgctaaataaaacaagccaga---aaaaagacaaatatgat---atttcacttatatgaggcacctagaataagcaaattcacaaaaacagaaagtagaatacaggttaccaggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30295855 670 + 173848474 aaatatttgccaatcacatatctgaaaaagaattaatatccagactacatacagaactacaacttaacaatagca-------aaacaatctcattcaaaaatgggtaaaagacatgaat------agacaattctccagagaagaaacacagtaaggacataaaaataaggaattccaataaggacatgaaaatatgctcagcttcactagtccaggtgttggtgaggatgtggagaaaatggaatgcttgtgcactgctgctgagagtgaacaacagtgcagccaccatgg-aaacaggatgatgctttctcaagaaggtaaacatagaatttccatatgaagca------------------------------------------acaattccacttttgggtgtataccccccaaaaattgaaagcaggtatgcacacagataattgtacagtcacgctcatagcagtgctattcccaatagccaaaaggtggacg----caacccaagtgtccatcagaggatgattggaaaaacaaaatgtg------------------------gtgcatatacacatggaatattaatcagccttaaaagtgaagaatatttggat-------------tggatggaaccttgaaaacatgctaaataaaacaagccaga---aaaaagacaaatatgat---atttcacttatatgaggcacctagaataagcaaattcacaaaaacagaaagtagaatacaggttaccaggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6104237 669 +   6154872 aaatatttgccaatcacatatctgataaagaattaatatccagactacatacagaactacaacttaacaatagca-------aaacaatctcattcaaaaatgggtaaaagacatgaat------agacaattctccagagaagatacacagtaaggacataaaaataaggaattccaataaggacatgaaaatatgctcagcttcactagtccaggtgttggtgaggatgtggagaaagtggaatgcttgtgcactgctgctgagagtgagcaacagtgcagccaccatgg-aaacaggatgatgctttctcaagaaggtaaacatagaatttccatatgaagca------------------------------------------acaattccacttttgggtgtataccccccaaaaattgaaagcaggtatgcacacagataattgtacagtcatgctcgtagcagcgctactcccaatagccaaaaggtggacg----caacccaagtgtccatcagaggatgactagaaaaacaaaatgtg------------------------gtgcatatacacatggaatattaatcagccttaaaagtgaagaata-ttggat-------------tggatggaaccttgaaaacacgctaaataaaataagccaga---aaaaagacaaatatgat---atttcacttatatgaggcacctagaataagcaaattcacaaaaacagaaagtagaatacaggttaccaggg
i gorGor5.CYUI01015250v1   C 0 C 0
s colAng1.NW_012115566v1    2961044 668 -   3067355 aactatttgccaatcatatatctgataaagaattaatatccagaatatgtaaagaactgtaattcaacaatagca-------aaacaatctccttcaaaaattggtgaaatacatgaac------agacaattatccaaagaagatatacaataaggacataaaaataaggaattccaacaaggacataaaaatatggtaaacttcactaggccaagtgt---tgaagatatggagaaatgggaacacttgtacactgctggtgagggtgaacagtggtgcagccaccatggaaaacagtatagtggttcctcaagaaagtaaaaatagaattgctgtatgagaca------------------------------------------acaattccacttttgggcatatagtcaaaagaaa-tgaaagcaggaacttacacagatatttgcacactcaggcccatagcagcactattcccaatacccaaaaggtggaag----cag-ccgagtgtccatcagaggatgattggataaacagcccacg------------------------gtgcacacacacatggaatattattcagccttaaaagtgaataaaattctaat-------------tgaat-gaaccttgaaagcactgtaagtgaaataagccagaaataaaaaaacaaatatgat---attttacttatatgagttagctagaataagctaattcatagaaacggaaagtagaatagaggttaccaggg
i colAng1.NW_012115566v1   C 0 I 699
s saiBol1.JH378341            22705 665 +    515838 aaacatttgccgatcacgtatctgataaagaattaatatccagactacataaagaactacaacttaacaatagca-------aagcaatcacattcaaaaatgggtaaaatgcatgaat------agacaattctccagagaagatacacaataaggacataaaaataaggaattccaagaggggcataacaaaatgctcagcttcactagtccaagtactggagaggatgtggaggaaatggaacac-tgtgcactgctggtgagagtgagcaatggtgcagccaccacag-aaacagtgtgatgcttcctcaagaaagtaaaaatagaatttccatgtgacccg------------------------------------------acaattc--ctttttggcatata-ccctcaaaactttaaagcaggtatgtacacagatatttgtgcactcatgctcatagcagttgtactcccaatagccaaacagtggatgcaaccaacccaaatgtccatcagaggatgact----aaacatgccatg------------------------gtgcacatgtgcatggaatattattcatccttaaaagtaaataatatttggat-------------tggatggaaccttcaaaacactctaagtgaaataagccag----aaaaagacaaatacgat---ttttcacttgtatgaggcagctagaataagcaaattcatagaaatagatagtagagtacaggttaccagag
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     158864 637 -    383796 aaataattgccgatcacgtatctgatacagaattaatatccagactacatgaagaactacaacttaacagtagca-------aagcaatcacattcaaaaacgggtaaga--catggat------agacaattctccagagaagatacacaataaggacataaaaataaggaattctaagaggggcataacaaactgctcagcttcactagtccgagtactggagaggatgcggagaaaacagaacac-tgtgcactgctggtgagagtgagcaatggtgcagccaccacag-aaacagtat-atgcttcctcaagaaagtaaaaagagaatttccatatgacctg------------------------------------------acaattctactttttggcatata-ccctcaaaaatttaaagcaggtatgtacacagataattgtgcactcatgttcatagcagcactgttcccaatagccaaatggtggatg----caacctaaatgtccatcagaagattact----aaacaacccatg------------------------gtgcccatacgcatggaatat-----------------------tatttggat-------------tggatggaaccttcaaaacacttgacatgaaataagccag----aaaaggacaaatatgat---ttttcacttatatgaggcagctagaataagcaaattcatagaaacagaaagtagaacacaggttaccaggg
i aotNan1.NW_018496904v1   I 14 C 0
s otoGar3.GL873550         17102931 715 -  18854210 --------------------------aaagaattaatatccagaatacataaagaactacagcttaacaataaaaaaaactgaaaaaaacccattcaaaa--tggtgaaagacatgaatgtgtcaattcaatccttcaaagaagatacaca-caagg------------------ccaataggcacatgaaaagatggtcaccttcaccagtccaggtgttggtgaggatgtgaacaaactggaatccttggacactgctggtgggaatgtgcaatggtgaggccaccatggaaagcagcacaatggtttctcaagagagtgaaaataaaattactacatgatccactgtcacgactgcataaaggatcacacgagacatggattgacacaattccacttctgcgcatata-ctcaaaagagtagggagcaggaactggaacagatctttgtg-actcatgctcatagcagcatcattccc-atagtcaga-ggtgcagg----caaccc-agtgctcctcagtggatggatgaataagcagaatgtggagtacatgcatgtatagctgtgtgtacacacacacacagaatattattcagcattaaaaatgactgaaattctgataccggcttcaacatggat-gaacctcaaaaacatgataagtaaaataagccagaaa-aaaaggacaaatgttatatgatttcacctgtaagaggtagctcagaagggcaaattcacagaaacagaaagtcaaatagaggttactaggt
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e cerAty1.NW_012002711v1     753671 96468 +    766320 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29857195 2190 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1108854.000000
s hg38.chr6_GL000254v2_alt  1100260 812 +   4827813 gctgaaggcaggaacaatgggcagctgtcatttaatgggtaca----gtctctgttgggatgatgaaaatgttctgaaaatgcatgt--tggtgtttgtgtaaccaccatcaattgtaaatgtgcttaatgccaatgaattgtacactgaaaaaaattgttagaaggtaaatcgtatagtatgtgtgttttaccacaa-ttttaaaaatatatatcaacaccaaatccaatcacttctcactcctctgccacctccaccccagaaccatcctcactaggatag----aaaaccggaagggccttccagctgggctgcctgctgactctcatgcccactgtccatcacccacacaacagagagagcgtgcctttccaatgggaattaggg--------------catatcctatgaacgctccagctccttcccttcttaggcacaaggaaaccccagtttcccaccatttcctatgcactccttatcacagggtcccctctggccactttggcctcatcccattactctcagcctagctcattcttctccactcacaccagtttcttgt--ctactccaccctgtctccaccacctgcccctgctgtgact-cccacatgcatgtgctgcccagtgatccacatggctcactcctcacaccattaaggtccctgcttaaatgtcccatggtcaagtgttcagaaatgtcttgtccagtgacctcttctgaaatctatcccctgccattcccaccaccgccaccaatcttctaacccaagcatatttttcttaatggcaattatcagtgatactatgacaggttttatttgt--ttattgtct
s panTro5.chr6             30065885 812 + 175400573 gctgagggcaggaacaatgggcagctgtcatttaatgggtaca----gtctctgttgggatgatgaaaatgttctgaaaatgcatat--tggtgtttgtctaaccaccatcaattgtaaatgtgcttaatgccaatgaattgtacactgaaaaaaattgttagaaggtaaatcgtatagtatgtgtgttttaccacaa-tttaaaaaatatatatcaacaccaaatccaatcacttctcactcctctgccacctccaccccagaaccatcctcactaggatag----aaaaccggaagggccttccagctgggctgcctgctgactctcatgcccactgtccatcacgcacacaacagagagagcgtgcctttccaatgggaattagag--------------catatcctatgaacgctccagctccttcccttcttgggcacaaggaaaccccagtttcccaccatttcctatgcactccttatcacagggtcccctctggccactttggcctcatcccattactctcagcctagctcactcttctccactcacaccagtttcttgt--ctactccaccctgtctccaccacctgcccctgctgtgact-cccacatgcatgtgctgcccagtgatccacatggctcactcctcacagcattaaggtccctgctcaaatgtcccatggtcaagtgttcagaaatgtcttgtccagtgacctcttctgaaatctatcccctgccattcccaccaccgccaccaatcttctaaaccaagcatatttttcttaatggcaattatcagtgatactatgacaggttttatttgt--ttattgtct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30296525 812 + 173848474 gctgagggcaggaacaatgggcagctgtcatttaatgggtaca----gtctctgttgggatgatgaaaatgttctgaaaatgcatat--tggtgtttgtctaaccaccatcaattgtaaatgtgcttaatgccaatgaattgtacactgaaaaaaattgttagaaggtaaatcgtatagtatgtgtgttttaccacaa-tttaaaaaatatatatcaacaccaaatccaatcacttctcactcctctgccacctccaccccagaaccatcctcactaggatag----aaaaccggaagggccttccagctgggctgcctgctgactctcatgcccactgtccatcacccacacaacagagagagtgtgcctttccaatgggaattagag--------------catatcctatgaacgctccagctccttcccttcttaggcacaaggaaaccccagtttcccaccatttcctatgcactccttatcacagggtcccctctggccactttggcctcatcccattactctcagcctagctcactcttctccactcacaccagtttcttgt--ctactccaccctgtctccaccacctgcccctgctgtgact-cccacatgcatgtgctgcccagtgatccacatggctcactcctcacagcattaaggtccctgctcaaatgtcccatggtcaagtgttcagaaatgtcttgtccagtgacctcttctgaaatctatcccctgccattcccaccaccgccaccaatcttctaaaccaagcatatttttcttaatggcaattatcagtgatactatgacaggttttatttgt--ttattgtct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6104906 806 +   6154872 gctgagggcaggaacaatgggcagctgtcatttaatgggtacg----gtctctgttgggatgatgaaaatgttctgaaaatgcatat--tggtgtttgtgtaaccaccaccaattgtaaatgtgcttaatgccaatgaattgtacactg-aaaaaattgttacaaggtaaatcgtatagtatgtgtgttttaccacaa-ttttaaaaatatatatcaacaccaaatccaatcacttctcactcctctgccacctccaccccagaaccatcctcactaggatag----aaaaccggaagggccttccagctgggctg-ctgctgcctctcatgcccactgtccatcac-cacacaacagagagaacgtgcctgtccaatgggaattagag--------------catatcctatgaacgctccagctccttcccttcttaggcacaaggaaa-cccagtttcccaccatttcctatgcactccttatcacagggtcccctctgg-cactttggcctcatcccattactctcagcctagctcactcttctccactcacaccagtttcttgt--ctactccaccctgtctccaccacctgcccctgctgtgact-cccacatgcatgtgctgcccagtgatccacatggttcactcctcacaccattaaggtccctgctcaaatgtcccatggtcaagtgttcagaaatgtcttgtccagtgacctcttctgaaatctat-ccctgccattcccacgaccggcaccaatcttctaacccaagcatatttttcttaatggcaattatcagtgatactatgacaggttttatttgt--ttattgtct
i gorGor5.CYUI01015250v1   C 0 C 0
s saiBol1.JH378341            23370 808 +    515838 gctgagggtaggaacaatgggcagctgtcatttaatgggcaca----gtttctgttgggatgatggaaatgctctggaaatgcatat--tggtgtttttgtaaccaccaccaattgtaaatgtgcttaatgccaatgaattgtacactgaaaaacactgttagaaggtaaattatatggtatgtatgttttgtcacaa-ttttaaaaaTGTATATTAACACTAaatccaatcacttcttagtcctctgccactttcacaccaaaaccatcctctctaggacag----taaactggaagggcctctcagctaggctgcctagtgcctctcatgcccatggtccaacgctaatacaacaga-ctagggtgcctttcaaacgggaattagag--------------catatcctatgaacactccagccccttcgcttcttgggcacaatgaaaccccaatttcccaccatttcctatgagctcctgatcaagggaccccctctggccactttggcctcatcccatcactctcagtccagctcactcgtctccactcacaccagcctcttat--ctgctctgtcctgtctctgccacctgcccctgctgtgact-cccacatgcacctgctccctaggcttccacacagctcactcctcacaccattaatgtctctttccaaatgtcccatggtcaagttttaggaaaggtcttgtccaatga---tctctgaaatctatcccctgccatttccacctccaccaccaatcttccaacctaggcacattttcctcaatggcaattatcactgatactatgacagattttattttt--ttattgtct
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     159501 802 -    383796 gctgagggtaggaacaatcggcagctgtcatttaatgggtaca----gtttctgctgggatgatgaaaatgttcttgaaatgcatat--cggtgattttgtaaccactaccaattttaaatgtgcttaatgccaatgaattgtacacagaaaaaaattgttagaaggtaaattgtatggtgtgtatgttttaccacaa-tTTAAAATATatatatcaacactaaatccaatcagttcttatgcctctactgcttccacaccaaaatcatcctctctaggatagataataaactggaagggcctttcagctagactgcctagtgcctctcatgcccactgtccaacactgatacagcaga-ctagtgtgtctttcaaatgggaattagag--------------catatcctatgaacactccagcccctttgcttctcgggcacaatgaaactccagttccccaccatttcctatgagctccttatcacggggcctcctctggccactttggcatcat-ccaccactctcagcccagctcactcatat---------ccagcctcttgt--ctg--ctgtcctgtctctgccacctgcccctgctgtgact-cccacatgcacctgctccctagggatccacatggctcgctcctcacaccattaatgtctcttttcaaatgtcccatggtcaagttttaggaaaggtcttgtccaatgactttttctgaaatctatcccctgccatttccacctccaccaccaatcttccagcctaggtatattttcctcaatggcaattatcactgatactatgacagattttattttt--ttattGTC-
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17103646 753 -  18854210 gttgagagaagggagaatagggagttactgtttaatgggtagggagtgtctct-ttgggatgatgaaaaggttctggaaatggattttgtggtgattg---------caaggattgt-aatgtgctcagtgctgttgacttgttcacc--aaaacatgtttaaagggtagattctgtgttatgtatg-tttaccacagtTTTTAAAAGTGTATACCAAGATAAAACCCAGTCTCTTCTCACACGTCC---------------------------CTGAGGCAG----CAAATAAGaagagcctcccaagtaggccccatgttcactctcatcccttctgtccatcacccaggcaagagacaatgtgatcctttcaaataggaatcagaatacgtcctcaccaccacgtcccaggaacactccagcatctcctcttctcaggcacaatgaaatcccagcccctcaccttttcctacaagtccctcatcctg-----------ggcccctttggcctcatcccaccactgtcagcccagctcagtcctctcaattgac-ccagcctctcatcactgccccatcctctct-------ctacccctgctgtgactccccacatgcccttcctccccagg--tccacacagccccctcctctcaccatacagggctttgctgtcacatgcaagggtcaagtcctcagaaatgtcttgcccag-------------------tctcctgccatcctcagcac---caccaatctcctagcccaggcatatttt-ctctgtgacaattatcactgatatcagaataattggtttttgttgttgttgtct
i otoGar3.GL873550         C 0 I 737
e micMur3.chr6               240797 2210 + 123392446 T
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e cerAty1.NW_012002711v1     753671 96468 +    766320 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29857195 2190 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=606768.000000
s hg38.chr6_GL000254v2_alt  1101072 597 +   4827813 gtTGatttattaaggttaccaagaaagaaagaaccaatagcataggtacatagat----gatagatagataatagatagatagatgatagatgatagatagatgttagatgatgatagatagatagatagatagatagatagatagatagatagatagacagacagatagatagataggtgatttattgggctaattggctcacacaattatggaggctgagaagtcccatgatagactgtctggaagctggagaactagaaaagccagtagcgtggctcagtccaaagtcaaagccctgaggacccagaatacagaacaggaggataaaggggctcactggtgcaaaagtcagagtccaaagatcatcgaacctggagttttgatgtccaaggcaggagaagaagggtgtcccagccccagttccagagag--------agagtcagagacagagagagacagagagacagagacagagagaaatttta-cttctatctacctttctgttctatctgggccactaggtgattggactgtggctgcccacagtgagagaggatcttccccacc-agtccacccactcacatccc------ttccagaaaaactctca
s panTro5.chr6             30066697 592 + 175400573 gtTGATTTATTAAGGTTACCAAGAAAGAAAGAACCAatagcataggtagatagatgatagatagatagataatagatagatagatgatagatgatagatagatgttagat---------------gatagatagatagatagacagacagacagacagacagatagatagatagatagGTgatttattgggctaattggctcacacaattatggaggctgagaagtcccatgatagactgtctggtagctggagaactagaaaagccagtagcatggctcagtccaaagtcaaagccctgaggatccagaatacagaacaggaggataaaggggctcactggtgcaaaagtcagagtccaaagatcatcgaacctggagttttgatgtccaaggcaggagaagaagggtgtcccagccccagttccagagagag--agacagagacagagacagagagagacagagagacagagacagagagaaatttta-cttctatctacctttctgttctatctgggccactaggtgattggactgtggctgcccacagtgagagaggatcttccccacc-agtccacccactcacatccc------ttccagaaaaactctca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30297337 597 + 173848474 gtTGATTTATTAAGGTTACCAAGAAAGAAAGAACCAatagcataggtagatagatgatagatagatagataatagata-------gatagatgatagatagatgttagat---gatagatagatagatagatagatagatagatagacagacagacagacagacagacagatagatagGTgatttattgggctaattggctcacacaattatggaggctgagaagtcccatgatagactgtctggaagctggagaactagaaaagccagtagcatggctcagtccaaagtcaaagccctgaggacccagaatacagaacaggaggataaaggggctcactggtgcaaaagtcagagtccaaagatcatcgaacctggagttttgatgtccaaggcaggagaagaagggtgtcccagccccagttccagagagag--agacagagacagagacagagagagacagagagacagagacagagagaaatttta-cttctatctacctttctgttctatctgggccactaggtgattggactgtggctgcccacagtgagagaggatcttccccacc-agtccacccactcacatccc------ttccagaaaaactctca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6105712 581 +   6154872 gtTGATTTATTAAGGTTACCAAGAAAGAAAGAA-CAatagcataggtagatagatgatagatagatagataatagatagacagatgatagatgatagatagatgttagat-------------------gatagatagatagatagacagacagacagacagacagatagatagatagGTgatttattgggctaattggctcacacaattatggaggctgagaagt-ccatgatagactgtctggaagctggagaactagaaaagccagtagtgtggctcagtccaaagtcaaagccctgaggacccagaatacagaacaggaggataaaggggctcactggtgcaaaagtcagagtccaaagatcatcgaacctggagttttgatgtccaaggcaggagaagaagggtgtcccagccccagttccagagag--------agagacagagacagagagagacagagagacagagacagagagaaattttaccttctatctacctttctgttctatctgggccactaggtgattggactgtggctgcccacagtgagagaggatctttcccaca-agtccaaccactcacatccc------ttccagaaaaactctca
i gorGor5.CYUI01015250v1   C 0 C 0
s saiBol1.JH378341            24178 547 +    515838 gtt-ctttAttaggactatcaagaaagaaaaaatcaagagcaatgatagat--------gatagacagaga--------------gttaaatgatagatag---atagat-------------------------------gacagatagatagatagatagatagataga--------ggattcattgggctaattggctcacacaattatagaggctgagaagtcgtgcaacagactgtcagcaagctggagaactagaaaagccagtagcggagcttagtccaagatcaaaggcccaaggacccagaaaagggagcaggaggataaaggggcacactggtgcaagactcggaatctaaagactattgaacctgtagttttgatatccaaggcaggagaagaagggtgtctcagtctcagctccacagagac--taagtgagacagcaacagagacagagacaaagacagaggcagagagaaatttgc-cttctatctgcctttctgttcgatctgggccccgaagtgattggattgtggctgcc--cagtgagggaggatcttcttcactaagtccacccactcacatgccaatcatttccagaaacaccctca
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     160303 567 -    383796 ----CTTCATTAGGACTACTGagaaagaaagaaccaagagcacagatagat--------gatagacagata--------------gataaatgacagatagattatagat----------------------ggatggatggatagatagatagatagatagatagatagataaagaggggattcattggactaattggctcacacaattataaaggctgaaaagtcccacaacagactgtctgaaaactggagaactagaaaagctggtagcagggctcagtcgaaggccaaaggcccaaggactcagaaaagggagcaggaggattaaggtacacactggtgcaagactcagagtctaaagaccatcaaacctgtagttttgatgtccaaggcaggagaagaagggtgtctcagtctcagctccagagagacagtaagagagagagcaacagagacagagacaaagacagaggcagagagaaatttgc-cttctatctgcctttctgttctatctgggccctgaggtgattggattgcggctgcccacagggagggaggatcttctccactaagtccacccactcacatgcccatcatttccagaaaca-cctca
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17104399 737 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e cerAty1.NW_012002711v1     753671 96468 +    766320 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29857195 2190 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=470351.000000
s hg38.chr6_GL000254v2_alt  1101669 320 +   4827813 cagacacTGGTTTAATACTTACAATTTGAGTAGTCTAT-AAttta-tt--tttttgagattgg-gcttgct----------ggctggagtgcagtgt--tgttcatggctcactgcagcctgaatcttccaggcttaagcaaccctcccacctcagacacccaagtagctgggactacaggcatgtgccaccaagcccggctaattc----ttttgaattttttgtagagacagggtttctctatgttgcctaggctggtcacaaa-ctcaggggctcaagcaatctgccagcctgagcctcccaaagtgctggaagtacaggcatgagccaccatgtccAT
s panTro5.chr6             30067289 320 + 175400573 cagacacTGGTTTAATACTTACAATTTGAGTAGTCTAT-AAttta-tt--tttttgagattgg-gcttgct----------ggctggagtgcagtgt--tgttcatggctcactgcagcctgaatcttccaggcttaagcaaccctcccacctcagacacccaagtagctgggactacaggcatgtgccaccaagcccagctaattc----ttttgaattttttgtagagacagggtttctctatgttgcctaggctggtcacaaa-ctcaggggctcaagcaatctgccagcctgagcctcccaaagtgctggaagtacaggcatgagccaccatgtccAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30297934 320 + 173848474 cagacacTGGTTTAATACTTACAATTTGAGTAGTCTAT-AAttta-tt--tttttgagattgg-gcttgct----------ggctggagtgcagtgt--tgttcatggctcactgcagcctgaatcttccaggcttaagcaaccctcccacctcagacacccaagtagctgggactacaggcatgtgccaccaagcccagctaattc----ttttgaattttttgtagagacagggtttctctatgttgcctaggctggtcacaaa-ctcaggggctcaagcaatctgccagcctgagcctcccaaagtgctggaagtacaggcatgagccaccatgtccAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6106293 319 +   6154872 cagacacTGGTTTAATACTTACAATTTGAGTAGTCTAT-AAttta-tt--tttttgagactgg-gcttgct----------ggctggagtgcagtgt--tgttcatggctcactgcagcctgaatcttccaggcttaagcaaccctcccacctcagacacccaagtagctgggactacaggcatgtgccaccaagcccggctaattc----ttttgaattttttgtagagacagggtttctctacgttgcctaggctggtcacaaa-ctcaggggctcaagcaatctgccagcctgagcctcccaaagtgctggaagtacaggcatgagccaccatgt-cAT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29859385 340 - 170955103 CAGTCTCTGGTTTAATATTTATCACTTGAGTAGTCTATGAAttta-tttattttggagacaaattctcactctgtagcccggtctggagggcagtggcatgatcacagctcacttcagcctcaaccttccaggctcaaacaatcttcccacctcaaacactggggtacctaggactagaagctcacgccaccgtgcccagctatttttttatttttatttttttgtagagacagggttttgccatattgcccaggcgggtcttgaa-cttctgggctcggacaatccaccctccttgacctcccaaagcgttgagattacaggcttgaggcaccacacctgg
i macFas5.chr4             I 2190 C 0
s saiBol1.JH378341            24725 323 +    515838 cagacacTGGTTTAACACCTGCCATTTGAATAGTGTAT-AAtttattt--tttttgagagaggggctcact----------ggctggagtgcagtgg--tgttcaaggctcactgcagcctgaatcgtccaggcttaagcaattcttccacctcagccacctgagtagctgggactacaggcgtgcaccaccaagcctggctaatcc----ttttgtattttttgtagagatagggtttctccttgttgcctaggctggcctaaaatttcatgggctcaagcaatctgcctgcctcagtctcccaaagtgctgggagtataggcatgagccaccatgcccaa
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     160870 321 -    383796 cagacacTGATTTAATACTTACCATTTGAATAGTATAT-AAttta-tt--tttttgagacaggggctcgct----------ggctggagtgcaatgg--tgttcaaggctcaatgcagcctgactcttccaggcttaatcaactcttccacctgagccacctgagtagctgggactacaggcatgcaccaccaagcccagctaatcc----ttttgtattttttgtagagatagggtttctccatgttgcctaagctggtctaaaa-ctcatgggctcaagcaatctgcctgcctcagtctgccaaagttctgtgaatgtaggcatgagccaccatgaccaa
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17104399 737 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e cerAty1.NW_012002711v1     753671 96468 +    766320 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=553677.000000
s hg38.chr6_GL000254v2_alt  1101989 165 +   4827813 CCTGAGTGTTCTATGAATTTTTAAAATCACAACCATAGAAGAATCTTCATGTACAAACATGCTTGTCAAAATATTCTTTACCAAAAGACAAGATGAAAGCACATGGATCT-AAA------AGAACCCTGGTGAC---TTCTCCTTGTTTGAGATGGGATGCAGCTTCTAGAAGTG
s panTro5.chr6             30067609 165 + 175400573 CCTGAGTGTTCTATGAATTTTTAAAATCACAACCATAGAAGAATCTTCATGTACGAACATGCTTGTCAAAATATTCTTTACCAAAAGACAAGATGAAAGCACATGGATCT-AAA------AGAACCCTGGTGAC---TTCTCCTTGTTTGAGATGGGATGCAGCTTCTAGAAGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30298254 165 + 173848474 CCTGAGTGTTCTATGAATTTTTAAAATCACAACCATAGAAGAATCTTCATGTACGAACATGCTTGTCAAAATATTCTTTACCAAAAGACAAGATGAAAGCACATGGATCT-AAA------AGAACCCTGGTGAC---TTCTCCTTGTTTGAGATGGGATGCAGCTTCTAGAAGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6106612 165 +   6154872 CCTGAGTGTTCTATGAATTTTTAAAATCACAACCATAGAAGAATCTTCATGTACAAACATGCTTGTCAAAATATTCTTTACCAAAAGACAAGATGAAAGCACATGGATCT-AAA------CGAACCCTGGTGAC---TTCTCCTTGTTTGAGATGGGATGCAGCTTCTAGAAGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30197547 168 + 172585720 ccTGAGTAGTCTATGAATTTTTAAAATCCCAACCATAGGAGAATCTTTATGCACAAACATGCTTGTCAAAATATTACCTACAAAAAGACAAGATGAAAGCAGATGGATCT-AAA------ATAACTCTGGTTACATAATCTCCTTATTTGACATGGGATGTAGCTTGTAAAAGTG
i rheMac8.chr4             N 0 C 0
s macFas5.chr4             29859725 168 - 170955103 ccTGAGTAGTCTATGAATTTTTAAAATCCCAACCATAGGAGAATCTTTATGCACAAACATGCTTGTCAAAATATTACCTACAAAAAGACAAGATGAAAGCAGATGGATCT-AAA------ATAACTCTGGTTACATCATCTCCTTATTTGACATGGGATGCAGCTTGTAAAAGTG
i macFas5.chr4             C 0 I 308
s cerAty1.NW_012002711v1     657203 168 +    766320 ccTGAGTAGTCTATGAATTTTTAAAATCCCAACCATAGGAGAATCTTTATGCACAAACATGCTTGTCAAAATATTACCTACAAAAAGACAAGATGAAAGCAGATGGATCT-AAA------ATAACTCTGGTTACATCATCTCCTTATTTGACATGGGATGCAGCTTGTAAAAGTG
i cerAty1.NW_012002711v1   T 96468 C 0
s chlSab2.chr17            29112875 168 -  71996105 ccTGAGTAGTCTATGAATTTTTAAAATCCCAACCATAGGAGAATCTGTATGCACAAACATGTTTGTCAAAATATTACCTACAAAAAGACAAGATGAAAGCAGATGGATCT-AAA------ATAACTCTGGTTACATCATCTCCTTATTTGACATGGGATGCAGCTTGTAAAAGTG
i chlSab2.chr17            N 0 C 0
s saiBol1.JH378341            25048 171 +    515838 ccTGAGTAGTCTATGAATATTTAAAATCACAACCATGGAAGAATCTTTATGTACAAACATGGTTGTCAAAATATTACTTACTTAAAGACAAAATGAAAGCAGATGGATCT-AAAAGAATGAGAACACTGGCCAC---ATCTCTTTGTTGGAGATGAGATGCAGCTTGTAAAAGTC
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     161191 171 -    383796 ccTGAGTAGTCTATGAATTTTTAAAATCACAACCATAGAAGAATCTTTACATACAAACATGGTTGTCAAAATATTACTTATCAAAAGACAAAATGAAAGCAGATGGATCTAAAAAAAACAAGAACACTGGCCAT---ATCTCCTTGTTGGAGATGGGATGCAGCTTGT-AAAGTC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17104399 737 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=6318.000000
s hg38.chr6_GL000254v2_alt  1102154 2 +   4827813 TG
s panTro5.chr6             30067774 2 + 175400573 TG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30298419 2 + 173848474 TG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6106777 2 +   6154872 TG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30197715 2 + 172585720 TG
i rheMac8.chr4             C 0 I 308
s macFas5.chr4             29860201 2 - 170955103 TG
i macFas5.chr4             I 308 C 0
s cerAty1.NW_012002711v1     657371 2 +    766320 TG
i cerAty1.NW_012002711v1   C 0 I 308
s chlSab2.chr17            29113043 2 -  71996105 TG
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341            25219 2 +    515838 TG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     161362 2 -    383796 CA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17104399 737 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=4095.000000
s hg38.chr6_GL000254v2_alt  1102156 1 +   4827813 T
s panTro5.chr6             30067776 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30298421 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6106779 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30198025 1 + 172585720 T
i rheMac8.chr4             I 308 C 0
s macFas5.chr4             29860203 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     657681 1 +    766320 T
i cerAty1.NW_012002711v1   I 308 C 0
s chlSab2.chr17            29113045 1 -  71996105 T
i chlSab2.chr17            C 0 I 330
s saiBol1.JH378341            25221 1 +    515838 T
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     161364 1 -    383796 T
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17104399 737 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=56485.000000
s hg38.chr6_GL000254v2_alt  1102157 22 +   4827813 AAATTTTATGCAGACTTTATGA
s panTro5.chr6             30067777 22 + 175400573 AAATTTTATGCAGACTTTATGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30298422 22 + 173848474 AAATTTTATGCAGACTTTATGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6106780 22 +   6154872 AAATTTTATGCAGACTTTATGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30198026 22 + 172585720 AAACTTTATACAGAGTTTACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29860204 22 - 170955103 AAACTTTATACAGAGTTTACAG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     657682 22 +    766320 AAACTTTATACAGAGTTTACAG
i cerAty1.NW_012002711v1   C 0 C 0
s saiBol1.JH378341            25222 22 +    515838 AAACTCTATGCAGACTTTATGA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     161365 22 -    383796 AAACTCTATGCAGACTTTATGA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17104399 737 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e chlSab2.chr17            29113046 330 -  71996105 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=213185.000000
s hg38.chr6_GL000254v2_alt  1102179 59 +   4827813 CATGGAAAACTACTTTCATAATAATACATTCAAAAAGCAAC-TTCAAAATAACCCACAAC
s panTro5.chr6             30067799 59 + 175400573 CATGGAAAACTACTTTCATAATAATACATTCAAAAAGCAAC-TTCAAAATAACCCACAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30298444 59 + 173848474 CATGGAAAACTACTTTCATAATAATACATTCAAAAAGCAAC-TTCAAAATAACCCACAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6106802 59 +   6154872 CATGGAAAACTACTTTCATAATAATACATTCAAAAAGCAAC-TTCAAAATAACCCACAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30198048 60 + 172585720 CATGGAAAACTACTTGTATAATAATACATTCACAAAGCAACATTCAAGATAACCCATAAC
i rheMac8.chr4             C 0 I 380
s macFas5.chr4             29860226 60 - 170955103 CATGGAAAACTACTTGTATAATAATACATTCAAAAAGCAATATTCAAGATAACCCATAAC
i macFas5.chr4             C 0 I 91
s cerAty1.NW_012002711v1     657704 60 +    766320 CATGGAAAACTACTTGTATAATAATACATTCAAAAAGCAATATTCAAGATAACCCATAAC
i cerAty1.NW_012002711v1   C 0 I 374
s chlSab2.chr17            29113376 60 -  71996105 CATGGAAAACTACTTGTATAATAATACATTCAAAAAGCAACATTCAAGATAACCCATAAC
i chlSab2.chr17            I 330 I 1
s saiBol1.JH378341            25244 60 +    515838 CATGGAAAACTACTTGCATAATAATACTTTCAAAAAGAAACATTCAAAATAACCCATAAC
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     161387 60 -    383796 CATGGAAAACTACTTGCATAATAGTACTTTCAAAAAGTAATATTCAAAATAACCCACAAC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17104399 737 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=365233.000000
s hg38.chr6_GL000254v2_alt  1102238 266 +   4827813 cactctgggaggccaaggtgggtggatcacttgaggtcaggtgttcaaaaccagcctggccaaca-agtgtaaccccatctatattaaaaacacaaaatta-gccaggcgtggtagtgcacatctgtaatcccagctactcgaggggctgaggcagaagactcacttgcatccgagatgcagaggttgcagtgagccgagatcatgccactgcactccagcccctgggggacagagtgagactccatc--ttaaaaaaaaCCCCAAAACT
s panTro5.chr6             30067858 266 + 175400573 cactctgggaggccaaggtgggtggatcacttgaggtcaggtgttcaaaaccagcctgaccaacg-agtgtaaccccatctatattaaaaacacaaaatta-gccaggcgtggtagtgcacatctgtaatcccagctactcaaggggctgaggcagaagactcacttgcatccgagatgcagaggttgcagtgagccgagatcatgccactgcactccagcccctgggggacagagtgagactccatc--ttaaaaaaaCCCCCAAAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30298503 266 + 173848474 cactctgggaggccaaggtgggtggatcacttgaggtcaggtgttcaaaaccagcctggccaacg-agtgtaaccccatctatattaaaaacacaaaatta-gccaggcgtggtagtgcacatctgtaatcccagctactcgaggggctgaggcagaagactcacttgcatccgagatgcagaggttgcagtgagtcaagatcatgccactgcactccaggccctgggggacagagtgagactccatc--ttaaaaaaaCCCCCAAAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6106861 266 +   6154872 cactctgggaggccaaggtgggtggatcacttgaggtcaggtgttcaaaaccagcctggccaata-agtgtaaccccatctatattaaaaacacaaaatta-gccaggcatggtagtgcacatctgtaatcccagctactccaggggctgaggcagaagactcacttgcatccgagatgcagaggttgcagtgagccgagatcatgccactgcactccagcccctgggggacagagtgagactccatc--ttaaaaaaaCCCCCAAAACT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29860377 258 - 170955103 tactttgaaaagctgaggtgggcggatcacttgaggtcgggagttcgagaccagactgaccaacatggcaaaaccccatctctactaaaaatacaaaaaaatgctgggcctggtggcgcatgtgtgtaatctcagctactcaggaggctgaggcatggaaattgcttgaacctaagaggcagaggttgcagtgagctgaggtcgcaccactgcactccag--cctgggtgacagagtgaaattgtgtt--tcaGaaa------caaaa--
i macFas5.chr4             I 91 C 0
s saiBol1.JH378341            25304 268 +    515838 cactctgcgaggccgacgggagtggattacttgaggtcaggtgttcaagatcaacctgaccaaca-agtgaaactccatctctactaaaaacacaaaatta-gccaggcttggtagctcatgtctgtagtcccagctactcaaaagggtgaggcaagaggaacacttgaatctgggatccagaggttgcagtgagccaagatcataccacttcactccaggaactgcagacaggagtgagactctatcaaataaaaGATAACCCACAACT
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     161447 262 -    383796 cgctctgggaggccagtgtgggtggatgacttgaggtcagg------agatcagcctggccaaca-agtgaaaccccatctctaccaaaaacacaaaatta-gccaggcttggtagctcatgtctgcagtcccagctactcaaaagggtgaggcaggagaaacacttgaacccaggatccagaggttgcagtgagccaagatcatgccacttcactcaagTAACTGCAGACAGGACCAAGACTCTATCAAATGAAAGATAATCCACAACT
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17104399 737 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e chlSab2.chr17            29113436   1 -  71996105 I
e cerAty1.NW_012002711v1     657764 374 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e rheMac8.chr4             30198108 380 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=57806.000000
s hg38.chr6_GL000254v2_alt  1102504  51 +   4827813 TATGAATGCAACTTTCTACAATGAAAGCATATAT----------------------------------------AAAAATATAT--------------ACATAGA
s panTro5.chr6             30068124  51 + 175400573 TATGAATGCAACTTTCTACAATGAAAGCATATAT----------------------------------------AAAAATATAT--------------ACATAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30298769  51 + 173848474 TATGCATGCAACTTTCTACAATGAAAGCATATAT----------------------------------------AAAAATATAT--------------ACATAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6107127  50 +   6154872 TATGAATGCAACTTTCTACAATGAAA-CATATAT----------------------------------------AAAAATATAT--------------ACATAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29860635  23 - 170955103 --------------------acaaaaacaaaaac----------------------------------------aaaaCTACC----------------------
i macFas5.chr4             C 0 I 2
s chlSab2.chr17            29113437  51 -  71996105 TATGAATGCAACTTTGTACAATAAAGGTATCTAT----------------------------------------AAAAATACAT--------------AAATAGA
i chlSab2.chr17            I 1 I 330
s saiBol1.JH378341            25572 105 +    515838 TATGAATGCAACTTTATACAATGAACGCATATATAAATacacacacacacacacacacacacacacacacacacacacatatatatatatatacacacacaTAGA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     161709  51 -    383796 TATGAATGCAACTTTGTACAATGAAAGCATATAT----------------------------------------ACAAATATAT--------------ACATAGA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17104399 737 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e cerAty1.NW_012002711v1     657764 374 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e rheMac8.chr4             30198108 380 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=10084.000000
s hg38.chr6_GL000254v2_alt  1102555 9 +   4827813 AAACAAAAG
s panTro5.chr6             30068175 9 + 175400573 AAACAAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30298820 9 + 173848474 AAACAAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6107177 9 +   6154872 AAACAAAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29860660 6 - 170955103 CAACAA---
i macFas5.chr4             I 2 C 0
s saiBol1.JH378341            25677 9 +    515838 AAACAACAG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     161760 9 -    383796 AAACAACAG
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17104399 737 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e chlSab2.chr17            29113488 330 -  71996105 I
e cerAty1.NW_012002711v1     657764 374 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e rheMac8.chr4             30198108 380 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=649094.000000
s hg38.chr6_GL000254v2_alt  1102564 206 +   4827813 AATGGAAGTCAGCATCACTGCAGAAGATAGCTCCAGGGATGACCATTCACACTGCAGTCCAGGAAGTTTCAATAATATGATAGCAGTGGTTCTTTGGAGGGGAAGCCTGGGTGATATTTCTTTCTTCTCTGCATTTTT--TTTTCTTTAAAATTCAACCAGGTGTTGATGTGTGCATTTTAAATTCTTCTGTAATCAAATACATTTTC
s panTro5.chr6             30068184 206 + 175400573 AATGGAAGTCAGCACCACTGCAGAAGATAGCTCCAGGGATGACCATTCACACTGCAGTCCAGGAAGTTTCAATAATATGATAACAGTGGTTCTTTGGAGGGGAAGCCTGGGTGATATTTCTTTCTTCTCTGCATTTTT--TTTTCTTTAAAATTCAACCAGGTGTTGATGTGTGCATTTTAAATTCTTCTATAATTAAATACATTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30298829 205 + 173848474 AATGGAAGTCAGCACCACTGCAGAAGATAGCTCCAGGGATGACCATTCACACTGCAGTCCAGGAAGTTTCAATAATATGATAACAGTGGTTCTTTGGAGGGGAAGCCTGGGTGATATTTCTTTCTTCTCTGCA-TTTT--TTTTCTTTAAAATTCAACCAGGTGTTGATGTGTGCATTTTAAATTCTTCTATAATTAAATACATTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6107186 205 +   6154872 AATGGAAGTCAGCACCACTGCAGAAGATAGCTCCAGGGATGACCATTCACACTGCAGTCCAGGAAGTTTCAATAATATGATAGCAGTGGTTCTTTGGAGGGGAAGCCTGGGTGATATTTCTTTCTTCTCTGCA-TTTT--TTTTCTTTAAAATTCAACCAGGTGTTGATGTGTGCATTTTAAATTCTTCTGTAATCAAATACATTTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30198488 200 + 172585720 AATGGAAATCAGCACCACTGCAAAGGACAGCTCCAGGGACCAACATTCACACTG-AGTTCGGGAAGGTTCAACAAGACAATAGCAGTGATATTTTTAAGGGGAGACTTAGGTGGTATTTCTTTCTTCTATGCATTTTATTTTTTTTTT--AATTCAAGCAGGCATTGATCTGTG-----TAAAGTCTTCTGTGATCAAATAGATTTTC
i rheMac8.chr4             I 380 I 2
s macFas5.chr4             29860666 203 - 170955103 AATGGAAATCAGCACCACTGCAAAGGACAGCTCCAGGGACCAACATTCACACTG-AGTTCGGGAAGGTTCAACAAGACAATAGCAGTGATATTTTTGAGGGGAGACTTAGGTGGTATTTCTTTCTTCTATGCATTTTA--TTTTTTTT--AATTCAAGCAGGCATTGATCTGTGTATTCTAAAGTCTTCTGTGATCAAATAGATTTTC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     658138 203 +    766320 AATGGAAATCAGCACCACTGCAAAGGACAGCTCCAGGGACCAATATTCACACTG-AGTTCGGGAAGGTTCAACAAGACAATAGCAGTGATACTTTTGAGGGGAGACTTAGGTGGTATTTCTTTCTTCTATGCATTTTA--TTTTTTTT--AATTAAAGCAGGCATTGATCTGTGTATTCTAAAGTCTTCTGTGATCAAATAGATTTTC
i cerAty1.NW_012002711v1   I 374 C 0
s chlSab2.chr17            29113818 203 -  71996105 AATGGAAATCAGCACCACTGCAAAGGACAGCTCCAGGGACCAACATTCACACTG-AGTTCGGGAAGGTTCAACAATACAATAGCAGTGATATTTTTGAGGGGAGACTTAGGTGGTATTTCTTTCTTCCGTGCAATTTA--TTTTTTTT--AATTCAAGCAGGCATTGATCTGTGTATTCTAAAGTCTTCTGTGATCAAATAGATTTTC
i chlSab2.chr17            I 330 C 0
s saiBol1.JH378341            25686 206 +    515838 AATGGAAATCAGCATCACTGCAAAAGACAGCTCGAGGGACCTCAATTCACACTGCCTTCCAGGAAGGTTTAGTAATATAATGGCAGTGATTCTTTTGAGGGGAAGCCTGGGTGATATTTCTCTCTTATGTGCATTTTA--TTTTCTTTAAAATTCAAACAGGCATTGATCTGTACATTTTAAAGTCTTCTGTGATCAAATATAGTTTC
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     161769 206 -    383796 AATGGAAACCAGCACCACTGCAAAAGACAGCTCCAGGCACCACCATTCACACTGCATTCCAGGAAGGTTCAATAATATAATAGCAGTGGTTCTTTTGAGGGGAGGCCTGGGTGGTATTTTTCTCTTCTGTACATTTTA--TTTTCTTTAAAATTCAACCAGGCATTGATCTGTGCATTTTAAAGTCTTCTGTAATCAAATATATTTTC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17104399 737 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=30701.000000
s hg38.chr6_GL000254v2_alt  1102770 23 +   4827813 ATATTTCTAATGTAGAAACATGT
s panTro5.chr6             30068390 23 + 175400573 ATATTTCTAATGTAGAAACATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30299034 23 + 173848474 ATATTTCTAATGTAGAAACATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6107391 23 +   6154872 ATATTTCTAATGTAGAAACATGT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29860869 11 - 170955103 TCATTTCTAAT------------
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     658341 11 +    766320 TCATTTCTAAT------------
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29114021 11 -  71996105 TCATTTCTAAT------------
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341            25892 23 +    515838 ACATTTCTAATGTAGAAACATAT
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     161975 23 -    383796 ACATTGCTAATGTAGAAACATAT
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17104399 737 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e rheMac8.chr4             30198688  2 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=607782.000000
s hg38.chr6_GL000254v2_alt  1102793 193 +   4827813 ATTTTTAACATTCAAAATAAAACATTTGAAGTaaaataacaatgaaaagtggctgaacactgtggtgggcacctgtagtcccagctactcaggaggctgagataggagaatggctcgagctcacgaatttgaggctatgg----------tcacacctgtgaatagtcactgctctccagcctggagaacatagtgagacctc
s panTro5.chr6             30068413 193 + 175400573 ATTTTTAACATTCAAAATAAAACATTTGAAGTAAAATAACAatgaaaagtggctgaacactgtggtgggcacctgtagtcccagctactcaggaggctgagataggagaatggctcgagctcacgaatttgaggctgtgg----------tcacacctgtgaatagtcactgctctccagcctggagaacatagtgagacctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30299057 193 + 173848474 ATTTTTAACATTCAAAATAAAACATTTGAAGTAAAATAACAatgaaaagtggctgaacactgtggtgggcacctgtagtcccagctactcaggaggctgagataggagaatggctcgagctcacgaatttgaggctgtgg----------tcacacctgtgaatagtcactgctctccagcctggagaacatagtgagacctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6107414 192 +   6154872 ATTTTTAACATTCAAAATAAAACACTTGAAGTAAAATAACAatgaaaagtggctgaacactgtggtgggcacctgtagt-ccagctactcaggaggctgagataggagaacggctcgagctcacgaatttgaggctatgg----------tcacacctgtgaatagtcactgctctccagcctggagaacatagtgagacctc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30198690 195 + 172585720 ATTTCTAATATTCAGAATAAAGCATTTGAAGTAAAATAACAATGAAAAGTGGTTGA--------gtgcacacctgtagtcccaggtactcaggaggctgaggtgggagaatcgcttgagcctaggattttgaggctgtcatgtgctattatcacacctgtgaatagtcacttctcttcagcttggacaacatagtgagacccc
i rheMac8.chr4             I 2 C 0
s macFas5.chr4             29860880 186 - 170955103 ---------ATTCAAAATAAAGCATTTGAAGTAAAATAACAATGAAAAGTGGTTGA--------gtgcacacctgtagtcccaggtactcaggaggctgaggtgggagaatcgcttgagcctaggattttgaggctgtcatgtgctattatcacacctgtgaatagtcacttctcttcagcttggacaacatagtgggacccc
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     658352 186 +    766320 ---------ATTCAAAATAAAGCATTTGAAGTAAAATAACAATGAAAAGTGGTTGA--------gtgcacacctgtagtcccaggtactcaggaggctgaggtgggagaatcgcttgagcctaggattttgaggttgtcgtgtgctattatcacacctgtgaatagtcacttctcttcagcttggacaacatagtgagacccc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29114032 186 -  71996105 ---------ATTCAAAATAAAGCATTTGAAGTAAAATAACAATGAAAAGTGGTTGA--------gtgcacacctgtagtcccaggtactcaggaggctgaggtgggagaatcgcttgagcctaggattttgaggctgtcgtgtgctattatcacacctctgaatagtcacttctcttcagcttggacaacatagtgagacccc
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341            25915 191 +    515838 -ATTTTAACATTCAAAATAAAATATTTGAAGTAAAATAACAATGAAAAGTGGATGAACACTgtggcgggaacctgtagtcccagctactcaggagactgaggtgggagaattgcttgagttcaggagtttgaggctataa----------tcacacctgagagtagtgcctgctctccagcctgg-caacacagtgagatctc
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     161998 191 -    383796 -ATTTTAACATTCAAAATAAAACTTTTGAAGTAAAATAACAatgaaaagtggctgaacactgtggtgggcatctggagtctcagctactcaggaggctgaggtgggagaattgcttgagctcaggagtttgaggctataa----------tcacacctgtgaatagtggctgctgtccagcttgg-caacatagtgagatctc
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17104399 737 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=285060.000000
s hg38.chr6_GL000254v2_alt  1102986 81 +   4827813 atatttaaaataataataataaaaagaaGTTCAGATCTCCT-TCCAATCTCAACCTAAAACAAA-TTTCTCATTTGAAGTCCA
s panTro5.chr6             30068606 81 + 175400573 atatttaaaataataataataaaaagaaGTTCAGATCTCCT-TCCAATCTCAACCTAAAACAAA-TTTCTCATTTGAAATCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30299250 81 + 173848474 atatttaaaataataataataaaaagaaGTTCAGATCTCCT-TCCAATCTCAACCTAAAACAAA-TTTCTCATTTGAAATCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6107606 81 +   6154872 atatttaaaataataataataaaaagaaGTTCAGATCTCCT-TCCAATCTCAACCTAAAACAAA-TTTCTCATTTGAAGTCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30198885 79 + 172585720 --atctaaaaTAATAGTAGTACAAAGAAGTTCAGATCTCCT-TCCAACCTCAGCCTAAAGAAAA-TTTCTCATTTGAAATCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29861066 79 - 170955103 --atctaaaaTAATAGTAGTACAAAGAAGTTCAGATCTCCT-TCCAACCTCAGCCTAAAGAAAA-TTTCTCATTTGAAATCCA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     658538 79 +    766320 --atctaaaaTAATAGTAGTACAAAGAAGTTCAGATCTCCT-TCCAACCTCAGCCTAAAGAAAA-TTTCTCATTTGAAATCCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29114218 79 -  71996105 --atctaaaaTAATAGTAGTACAAAGAAGTTCAGATCTCCT-TCCAACCTCAGCCTAAAGAAAA-TTTCTCATTTGAAATCCA
i chlSab2.chr17            C 0 I 321
s saiBol1.JH378341            26106 80 +    515838 atctttaaaataataataataaaaag-aGTTCAGATCTCCT-GCCAATCTCAGCCTAAAACACA-TTTCTCATTTGAAGTCCA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     162189 77 -    383796 atctttaa---aataataataaaaag-aCTTCAGATCTCCT-GCCAATCTCAACCTAAAACATG-TTTCTCATTTGAAGTCCT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17105136 83 -  18854210 ACATTTGAAGTGAAATTTTGATGAAAAAGTCCAAATATCCTGTCCCAGCTCAACTTGAAGCAAACTCTCTTCCCTAGATGGCA
i otoGar3.GL873550         I 737 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=49018.000000
s hg38.chr6_GL000254v2_alt  1103067 20 +   4827813 TATGGCAGAAATGCCTACTG
s panTro5.chr6             30068687 20 + 175400573 TATGGTAGAAATGCCTACTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30299331 20 + 173848474 TATGGTAGAAATGCCTACTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6107687 20 +   6154872 TATGGCAGAAATGCCTACTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30198964 19 + 172585720 TAGGACAGAAATGCCGATT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29861145 19 - 170955103 TAGGACAGAAATGCCGATT-
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     658617 19 +    766320 TAGGACAGAAATGCCGATT-
i cerAty1.NW_012002711v1   C 0 C 0
s saiBol1.JH378341            26186 20 +    515838 TATGGCAGAAATGCCTACTG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     162266 20 -    383796 TATGGCAGAAATGCCTACTG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17105219 20 -  18854210 GGGGGCAGAAATTCCCAACG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e chlSab2.chr17            29114297 321 -  71996105 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1021001.000000
s hg38.chr6_GL000254v2_alt  1103087 308 +   4827813 ATGGCTCCTCCAGAGAGTAAAAAAAATATTGTTCCTCTACAATCCATGACTCATC---CTTCTGTTACAGTG-TTCACCTGGGCAATGAAGTCAACACTGAGAATATCATCAATTTATGGAATACTGATTATCTCTTTtatagatatataaattataattatgtatatatatattatattataatatatataATTACCATCACACCTGAGAGAGTGAGATGGATTCTTTT-CTTCCACAG-ATGAAAATCTGAGTCCCTGAGAACCTAGGGTTTTGGTATGGGTTCACTGAAAATGTTGGCCTTGAGAATTAGG
s panTro5.chr6             30068707 308 + 175400573 ATGGCTCCTCCAGAGAGTAAAAAAAATATTGTTCCTCTACAATCCATGACTCATC---CTTCTGTTACAGTG-TTCACCTGGGCAATGAAGTCAACACTAAGAATATCATCAATTTATGGAATACTGATTATCTCTTTtatagatatataaattataattatgtatatatacattatattataatatatataATTACCATCACACCTGAGAGAGTGAGATGGATTCTTTT-CTTCCACAG-ATGAAAATCTGAGTCCCTGAGAACCTAGGGGTTTGGTATGGGTTCACTGAAAATGTTGGCCTTGAGAATTAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30299351 307 + 173848474 ATGGCTCCTCCAGAGAGT-AAAAAAATATTGTTCCTCTACAATCCATGACTCATC---CTTCTGTTACAGTG-TTCACCTGGGCAATGAAGTCAACACTAAGAATATCATCAATTTATGGAATACTGATTATCTCTTTtatagatatataaattataattatgtatatatacattatattataatatatataATTACCATCACACCTGAGAGAGTGAGATGGATTCTTTT-CTTCCACAG-ATGAAAATCTGAGTCCCTGAGAACCTAGGGGTTTGGTATGGGTTCACTGAAAATGTTGGCCTTGAGAATTAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6107707 309 +   6154872 ATGGCTCCTCCAGAGAGTAAAAAAAATATTGTTCCTCTACAATCCATGACTCATC---CTTCTGTTACAGTGTTTCACCTGGGCAATGAAGTCAACACTAAGAATATCATCAATTTATGGAATACTGATTATCTCTTTtatagatatataaattataattatgtatatatacattatattataatatatataATTACCATCACACCTGAGAGAGTGAGATGGATTCTTTT-CTTCCACAG-ATGAAAATCTGAGTCCCTGAGAACCTAGGGGTTTGGTATGGGTTCACTGAAAATGTTGGCCTTGAGAATTAGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30198983 292 + 172585720 ATGGCACCTCCAGAGAGT-AGAAAAACATTCTTCCTCCAC--TCCACGACTCATC---CTTTGGTTACAGCG-TTTAGCTGAGCAATGAAGTCAAGGCTGAGAATACCATCAATTTATAGAATACTGATTATTTCatttatagacataaaaattataattatatatatat-------------ttatgtaAAAGTACCATCACACCTAAGACAGTGAGATGGATTTTTTC-CTTCCACAG-ATGAAAATATGAGTCCCTGAGAACATAAAGCCTTGGTCTGAGTTCACTGAAAATGTTGGCCTTGAGAATTAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29861164 292 - 170955103 ATGGCACCTCCAGAGAGT-AGAAAAACATTCTTCCTCCAC--TCCACGACTCATC---CTTTGGTTACAGCG-TTTAGCTGAGCAATGAAGTCAAGGCTGAGAATACCATCAATTTATAGAATACTGATTATTTCatttatagacataaaaattataattatatatatat-------------ttatgtaAAAGTACCATCACACCTAAGACAGTGAGATGGATTTTTTC-CTTCCACAG-ATGAAAATATGAGTCCCTGAGAACATAAAGCCTTGGTCTGGGTTCACTGAAAATGTTGGCCTTGAGAATTAGG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     658636 292 +    766320 ATGGCACCTCCAGAGAGT-AGAAAAACATTCTTCCTCCAC--TCCACGACTCATC---CTTTGGTTACAGCG-TTTAGCTGAGCAATGAAGTCAAGGCTGAGAATACCATCAATTTATAGAATACTGATTATTTCATTTATAGACGTAAAAATTATAATTACATATATAT-------------TTATGTAAAAGTACCATCACACCTAAGACAGTAAGATGGATTTTTTC-CTTCCACAG-ATGAAAATATGAGTCCCTGAGAACATAAAGCCTTGGTCTGGGTTCACTGAAAATGTTGGCCTTGAGAATTAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29114618 292 -  71996105 ATGGCACCTCCAGAGAGT-AGAAAAACATTCTTCCTCCAC--TCCACGACTCATC---CTTTGGTTACAGCG-TTTAGCTGAGCAATGAAGTCGAGGCTGAGAATACCATCAatttatagaatacagattatttcatttatagacataaaaattataattatatatatat-------------ttatgtaAAAGTACCATCACACCTAAGACAGTGAGATGGATTTTTCC-CTTCCACAG-ATGAAAATATGAGTCCCTGAGAACATAAAGCCTTGATCTGGGTTCACTGAAAATGTTGGCCTTGAGAATTAGG
i chlSab2.chr17            I 321 C 0
s saiBol1.JH378341            26206 301 +    515838 ATGGCTCTTCCAGAGAGT-AAAAATA-CTTCTTCCTCTAAAATCCGTGACTCATC---CTTCTGTTACAGTG-TTCACCTGAGCAATGAAGTCAACACTAAAATTATCGTCAGTTTATGGAATACTGATTATCTCATTTATAGATATATAAACTATAATTATGTATATATACATCATA-----TTATATGTAATTACCATCACACCTGAGAGAGTGAGATGGATCCTTCC-CTTCCAAAG-TTGAAAATCTGAGTCCCTGAGAACCTAGAGGTTTAGTCTGGGTTCACTAAAAATGTTGGCCTTGAGAATTAGG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     162286 301 -    383796 ATGGCTCTTTCAGAGAGT-AAAAAAA-ATTCTTCCTCTACAATCCATGACTCATC---CTTCTGTTACAGTG-TTCACCTGAGCAATGAAGTCAACACTAAAAATATCATCAGTTTATGGAATACTGATTATCTCATTTAAAGATATATAAATTACAATTATGTATACATACATTACA-----TTATATGTCATTACCATCACACCTGAGAGAGTGAGATGGATTCTTCC-ATTCCACAG-TTGAAAATCAGAGTCCCTGAGAACCTAGAGGTTTAGTTTGGGTTCACTAAAAATGTTGGCCTTGAGAATTATG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17105239 223 -  18854210 ATGGCTCCTTGGGAAGGA-GGAAATGAGCCCTTCCCCCACAGT----GGCTGATCTGACCCTGGATACAGAC-ATCAGCTGAGCGGTAA------------------CCTGCTCTTATATAATCCTAA------------------------------------------------------------------TGTCACCTCACCTGAGGGAGTGGGATGGATTCTTTCATTTTCATGGTGTGAATATCTGAGTCCCTGAGATCCCGAATGCCTAACATGACTTTTCTAGACACATT-GCCTTGTGAGTAAAG
i otoGar3.GL873550         C 0 I 863
e micMur3.chr6               240797 2210 + 123392446 T
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=528274.000000
s hg38.chr6_GL000254v2_alt  1103395 172 +   4827813 AAACA----GCTTCCTGCAGGCCTGCCTGGATGTGAGCCACACCAATGGAGTCTCCACAACAGCAGGAAGAGCAACTGAGAACCCTGGAAGCTTCACACTTGTA-ATGTTCCATGTCCAGCGGCATTCAGTTGATGGATGGGCCAAGATAAGAATACAGCTCCTTCCTTCAATTGGG
s panTro5.chr6             30069015 172 + 175400573 AAACA----GCTTCCTGCAGGCCTGCCTGGATGTGAGCCACACCAGTGGAGTCTCCACAACAGCAGGAAGAGCAACTGAGAACCCTGGAAGCTTCACACTTGTA-ATGTTCCATGTCCAGCGGCATTCAGTTGATGGATGGGCCAAGATAAGAATACAGCTCCTTCCTTCAATTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30299658 172 + 173848474 AAACA----GCTTCCTGCAGGCCTGCCTGGATGTGAGCCACACCAGTGGAGTCTCCACAACAGCAGGAAGAGCAACTGAGAACCCTGGAAGCTTCACACTTGTA-ATGTTCCATGTCCAGCGGCATTCAGTTGATGGATGGGCCAAGATAAGAATACAGCTCCTTCCTTCAATTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6108016 172 +   6154872 AAAGA----GCTTCCTGCAGGCCTGCCTGGATGTGAGCCACACCAGTGGAGTCTCCACAACAGCAGGAAGAGCAACTGAGAACCCTGGAAGCTTCACACTTGTA-ATGTTCCATGTCCAGCGGCATTCAGTTGATGGATGGGCCAAGATAAGAATACAGCTCCTTCCTTCAATTGGG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30199275 166 + 172585720 AGACACTCGGCCTCCTGCAGGCC-ACCTGGGCATGAGCCACACTGGTGGAGGCCGCACAACAGCAGGAAGAGCAACTGAGAACCCTGGAAGGTTCACACTTGTAGAGGGTGCACATC----------CAGTTGAAGGATGGGCCAAGGTGATAATCCAGCTCCTTCCTTCAGCTGGG
i rheMac8.chr4             C 0 I 6
s macFas5.chr4             29861456 166 - 170955103 AGACACTCGGCCTCCTGCAGGCC-ACCTGGGCATGAGCCACACTGGTGGAGGCCGCACAACAGCAGGAAGAGCAACTGAGAACCCTGGAAGGTTCACACTTGTAGAGGGTGCACATC----------CCGTTGAAGGATGGGCCAAGGTGATAATCCAGCTCCTTCCTTCAGCTGGG
i macFas5.chr4             C 0 I 1921
s cerAty1.NW_012002711v1     658928 166 +    766320 AGACACTCGGCCTCCTGCAGGCC-ACCTGGGCATGAGCCACACTGGTGGAGGCCGCACAACAGCAGGAAGAGCAACTGAGAACCCTGGAAGGTTCACACTTGTAGAGGGTGCACATC----------CAGTTGAAGGATGGGCCAAGGTGATAATCCAGCTCCTTCCTTCAGCTGGG
i cerAty1.NW_012002711v1   C 0 I 4
s chlSab2.chr17            29114910 176 -  71996105 AGACACTCGGCCTCCTGCAGGCC-ACCTGGGCATGAGCCATACTGGTGGAGGCCGCACAACAGCAGGAAGAGCAACTGAGAACCCTGGAACGTTCACACTTGTAGAGGGTGCACATCTAGTGAAATGCAGTTGAAGGATGGGCCAAGGTGATAATCCAGCTCCTTCCTTCAGCTGGG
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341            26507 176 +    515838 AGACACTCAGCTTCCTCTAGGCTCACCTGGGTGTCAGTCACACCAGTGGAGGCTCCACAACAGCAGGAAGAGCAATGGAAAACCCTGGAAGCTTCACACTTGCA-ATGGTCCATGTCCAGTGGACTGCAGCTGAAGGAGGAGCCAAGGTAAGAATACAGTTCCTTCCTTCAGTTAGG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     162587 176 -    383796 GGACACTCAGCTTCCTCTAGGCTCACCTGGTTGTGAGTCACACCAGTGGAGGCTCCACAACAGCAGGAAGAGCAATGGAAAACCCTGGAAGCTTCACACTTGTA-ATGGTCCATGTCCAGTGGAATGCAGCTGAAGGATGGGCCAAGCTAAGAATACAGTTCCTTCCTTCAGTTGGC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17105462 863 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=246732.000000
s hg38.chr6_GL000254v2_alt  1103567 85 +   4827813 GGTGGCAGAGGGGTGAATCAGTCAGCTACACATAATGTGTGTGGTGTTTCTACAGATATCTTTAATTACTCT-GCTGAGAACTCCA
s panTro5.chr6             30069187 85 + 175400573 GGTGGCAGAGGGGTGAATCAGTCAGCTACACATAATGTGTGTGGTGTTTCTACAGATATCTTTAATTACTCT-GCTGAGAACTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30299830 85 + 173848474 GGTGGCAGAGGGGTGAATCAGTCAGCTACACATAATGTGTGTGGTGTTTCTACAGATATCTTTAATTACTCT-GCTGAGAACTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6108188 86 +   6154872 GGTGGCAGAGGGGTGAATCAGTCAGCTACACATAATGTGTGTGGTGTTTCTACAGATATCTTTAATTACTCTGGCTGAGAACTCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30199447 81 + 172585720 GGGGGCAGATGGGCA----AGTCAGCTATGCATGCAGTGTGTGGTGTTACTAGAGCTATTGTTAGTTCCTCT-GCTGTGAACTCCA
i rheMac8.chr4             I 6 C 0
s macFas5.chr4             29863543 81 - 170955103 GGGGGCAGATGGGCG----AGTCAGCTATGCATGCAGTGTGTGGTGTTCCTAGAGCTATTGTTAGTTCCTCT-GCTGTGAACTCCA
i macFas5.chr4             I 1921 C 0
s cerAty1.NW_012002711v1     659098 81 +    766320 GGGGGCAGATGGGCG----AGTCAGCTATGCATGCAGTGTGTGGTGTTCCTAGAGCTATTGTTAGTTCCTCT-GCTGTGAACTCCA
i cerAty1.NW_012002711v1   I 4 C 0
s chlSab2.chr17            29115086 81 -  71996105 GGGCGCAGATGGGCG----AGTCAGCTATGCATGCGGTGTATGGTGTTCCTAGAGCTATTGTTAGTTCCTCT-GCTGTGAACTCCA
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341            26683 85 +    515838 GGTGGCACATGAGTGAGTCAGTCAGGTACACATGAACTGTGTGGTGTTCCTAGAGATGTCTCTAACTACTCT-GCTGAGAACTCCA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     162763 85 -    383796 AGTGGCAGATGGGTGAATCAGTCAGCTACACATGAGCTGTGTGGTGTTCCTAGAGATGTATTTAATTACTCT-GCTGAGAACTCCA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17105462 863 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=152731.000000
s hg38.chr6_GL000254v2_alt  1103652 44 +   4827813 CCTCAAATGTAC-AAAAACTCTGTACTCACTGGTAAGCAGGATCC
s panTro5.chr6             30069272 44 + 175400573 CCTCAAATGTAC-AAAAACTCTGTACTCACTGGTAAGCAGGATCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30299915 44 + 173848474 CCTCAAATGTAC-AAAAACTCTGTACTCACTGGTAAGCAGGATCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6108274 45 +   6154872 CCTCAAATGTACAAAAAACTCTGTACTCACTGGTAAGCAGGATCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30199528 44 + 172585720 CCCTGCACACAC-AAAAGCTGTATACTCACTGGTAAGCAGGATCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29863624 44 - 170955103 CCCTGCACACAC-AAAAGCTGTATACTCACTGGTAAGCAGGATCC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     659179 44 +    766320 CCCTGCGCATAC-AAAAGCTGTATACTCACTGGTAAGCAGGATCC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29115167 44 -  71996105 CCCAGCGCATAC-AAAAACTGTATACTCACTGGTAAGCAGGATAC
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341            26768 44 +    515838 CCCCACACATAT-GAAAACTCTGTACTTACTGGCAAGCAGGATCC
i saiBol1.JH378341         C 0 M 5164
s aotNan1.NW_018496904v1     162848 44 -    383796 CCCCACACATAC-GAAAACTCTGTACTTACTGGCAAGCAGGATCC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17106325 44 -  18854210 CCCTGAAGACAC-CAAAACTACATATTCCTTGTGAAGCAGGCTTT
i otoGar3.GL873550         I 863 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=955651.000000
s hg38.chr6_GL000254v2_alt  1103696 340 +   4827813 TTTTTAGGAAAGCAAA--GGACTTTGCTGACTTAA-GCAAAACATTTTCTCTCCAAATGAATTATCCTGATTGGATAATCTCTT-ACTCCCACTGAAATTAGCCCCAGAGTTGCATTTGAGCATTTGGGTCAAAGACAGAAAGTCATTTTGAGGGTTGGGCCTGGCTGATCTTGGACAATGTTCTGAAAGAGGGCTTTCTACTTGCAGAAGAACAAAGGTTTGCTCTGGGTAGGAGATGATGTCCTGA-----GAAGAAAAGACAGATAGGCAGATTCTCA----------AGCAAACTCAGGAGTTTACTATACAAAAGATTTTGGAATACCTTC-CTCAGCCTCTTTTTCattgtggt
s panTro5.chr6             30069316 340 + 175400573 TTTTTAGGAAAGCAAA--GGACTTTGCTGACTTAA-GCAAAACATTTTCTCTCCAAATGAATTATCCTGATTGGATAATCTCTT-ACTCCCACCGAAATTAGCCCCAGAGTTGCATTTGAGCATTTGGGTCAAAGACAGAAAGTCATTTTGAGGGTTGGGCCTGGCTGATCTTGGACAATGTTCTGAAAGATGGCTTTCTACTTGCAGAAGAACAAAGGTTTGCTCTGGGTAGGAGATGATGTCCTGA-----GAAGAAAAGACAGATAGGCAGATTCTCA----------AGCAAACTCAGGAGTTTACTATACAAAAGATTTTGGAATACCTTC-CTCAGCCTCTTTTTCattgtggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30299959 340 + 173848474 TTTTTAGGAAAGCAAA--GGACTTTGCTGACTTAA-GCAAAACATTTTCTCTCCAAATGAATTATCCTGATTGGATAATCTCTT-ACTCCCACCGAAATTAGCCCCAGAGTTGCATTTGAGCATTTGGGTCAAAGACAGAAAGTCATTTTGAGGGTTAGGCCTGGCTGATCTTGGACAATGTTCTGAAAGGGGGCTTTCTACTTGCAGAAGAACAAAGGTTTGCTCTGGGTAGGAGATGATGTCCTGA-----GAAGAAAAGACAGATAGGCAGATTCTCA----------AGCAAACTCAGGAGTTTACTGTACAAAAGATTTTGGAATACCTTC-CTCAGCCTCTTTTTCattgtggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6108319 340 +   6154872 TTTTTAGGAAAGCAAA--GGACTTTGCTGACTTAA-GCAAAACATTTTCTCTCCAAATGAATTATTCTGATTGGATAATCTCTT-ACTCCCACTGAAATTAGCCCCAGAGCTGCATTTGAGCATTTGGGTCAAAGACAGAAAGTCATTTTGAGGGTTGGGCCTGGCTGATCTTGGACAATGTTCTGAAAGAGGGCTTTCTACTTGCAGAAGAACAAAGGTTTGCTCTGGGTAGGAGATGATGTCCTGA-----GAAGAAAAGACAGATAGGCAGATTCTCA----------AACAAACTCAGGAGTTTACTATACAAAAGATTTTGGAATACCTTC-CTCAGCCTCTTTTTCattgtggt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30199572 338 + 172585720 TTTTATGGAAAGCAAA--TGACTTTCCTAACATAAGGTCAAACATTTGC-CTCCAAATGAATCATCCTAGTTGGGTAATCTCTTCACTCCCACTGAAATT-GCCCCAGAGTTGCACCTGAGCATTTGGATCGAAGACAGAAAGTCATTTTGGGAGTTGAGTCTGGCTGATCTGGGAC--TGTTGTGAAGAAAAGCTTTCTACTAACAGAAGAACAAGGGTGAGCTCTGAGTAGGAGATGACGTCCTAA-----GGGGAAAAGACAGATGGGCAGATGCTCA----------AGCAAACTCAGGAGTTTACCATATAACAGATTTTGGAAGCTATTC-CTCAGCCTCttttttattgtgat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29863668 338 - 170955103 TTTTATGGAAAGCAAA--TGACTTTCCTAACATAAGGTCAAACATTTGC-CTCCAAATGAATCATCCTAGTTGGGTAATCTCTTCACTCCCACTGAAATT-GCCCCAGAGCTGCACCTGAGCATTTGGATCGAAGACAGAAAGTCATTTTGGGAGTTGAGTCTGGCTGATCTGGGAC--TGTTGTGAAGAAAAGCTTTCCACTAACAGAAGAACAAGGGTGAGCTCTGAGTAGGAGATGACGTCCTAA-----GGGGAAAAGACAGATGGGCAGATGCTCA----------AGCAAACTCAGGAGTTTACCATATAACAGATTTTGGAAGCTATTC-CTCAGCCTCttttttattgtgat
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     659223 338 +    766320 TTTTATGGAAAGCAAA--TGACTTTCCTAACATCAGGTCAAACATTTGC-CTCCAAATGAATCATCCTAGTTGGGTAATCTCTTCACTCCCACTGAAATT-GCCCCAGAGTTGCACCTGAGCATTTGGATCGAAGACAGAAAGTCATTTTGGGAGTTGAGTCTGGCTGATCTGGGAC--TGTTGTGAAGAAAAACTTTCTACTAACAGAAGAACAAGGATGAGCTCTGAGTAGGAGATGACGTCCTAA-----GGGGAAAAGACAGATGGGCAGATGCTCA----------AGCAAACTCAGGAGTTTACCATATAACAGATTTTGGAAGCTATTC-CTCAGCCTCttttttattgtgat
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29115211 338 -  71996105 TTTTTTGGAAAGCAAA--TGACTTTCCTAACATAAGGTCAAACATTTCC-CTCCAAATGAATCATCCTAGTTGGGTAATCTCTTCACTCCCACTGAAATT-GCCCCAGAGTTGCACCTGAGCATTTGGATCCAAGACAGAAAGTCATTTTGGGAGTTGAGTCTGGCTGATCTGGGAC--TGTTGTGAAGAAAAGCTTTCTACTAACGGAAGAACAAGGGTGAGCTCTGAGTAGGAGATGACGTCCTGA-----GGGGAAAAGACAGATGGGCAGATGCTCA----------AGCAAACTCAGGAGTTTACCATATAACAGATTTTGGAAGCTATTC-CTCAGCCTCttttttattgtgat
i chlSab2.chr17            C 0 C 0
s aotNan1.NW_018496904v1     162892 332 -    383796 TCTTTAGGAAAGCAAA--GCACTTTCCTAAG-----GCCAAACATTTTCTCTCCAAGTGAATTATTCTCATTGGATAATCTCTT-ACTCCCACTGAAATTAGCCCCAGAGTTGCATTTGAGCATTTGGATCCAAGACAGAAAGTCACTTTTGGGGTTGGGCCTGGCTGATCTTGGACAACATCCTGAAAGAAGGCTTTCTACTTGCAGAAGAGCACGGGTGAACTCTCAGTAGGAGATGACGTCCTGA-----GAAGAAAAGACA----GGCAGATTCTCA----------AGCAAACTCAGGAGTTTCCCATACAAAAGATTTTGGAATATATTC-CTGAGCCTCTTTtttattgtgat
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17106369 336 -  18854210 TTCTCTGAAATGTAGACCTGACTGGCCTCATCTAAAGCCAGCAATGTCA-CTCCTAGTGA--CATCCCAATTGGATAATCCCA--ACTCCCACTAAAATTGGCCTCAGAGTTGCAGCTGAGCTCCTGGAGCC-AGGCAGGAAGTGAGTTCAGGGTTTGCACCTGGCTGATCTGGAGTGTGGTCCTGGAAGGTAGTGCCTCA-------------GCAGGTGGGCTCTGGGAGGCATGCAAGTGCCTGATGAGGGGAGACTAGACAGGTGGGAGGGCTCCAAAGTTTGTCTCAGTAGGCCCTGTGGCCCAGCATA----GGTATTTGGAAAATCTTCTCCCAGCCACTTTTGC-CTGTGGT
i otoGar3.GL873550         C 0 I 8542
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1104376.000000
s hg38.chr6_GL000254v2_alt  1104036 422 +   4827813 aaaatacacataaacacaaagga-tac-----caccgtaaccatt-taaa----gtgcacaatgcagtgacaattcgtatgttcacaatgttatgtaaccatcatcactctctagttccagagtgtttttatcacctcagggggaactctgcacccattaagcagtcaccctccatttccacctgccagcagaccctgtcgccacaaatccac-ttctttctctatcgacttgcctctta--tgaatatttcacaaaaatgggctcataagttacgtagcctcctgtgactggcttccttcacttgtcttgttttcaagattcagcaatgttttagcatatgccagtgctttattcattttatgaccaaataatattctattgtaggaaaaaactatatgttgtttctccattcattggtcgatggacatttTCTT
s panTro5.chr6             30069656 423 + 175400573 aaaatacacataaacacaaagga-tac-----caccgtaaccatt-taaa----gtgcacaatgcagtgacaattcgtatgttcacaatgttatgtaaccatcatcactctctagttccagagtgtttttatcacctcagggggaactctgcacccattaagcagtcaccctccatttccacctgccagcagaccctgtcgccacaaatccactttctttctctatcgacttgcctctta--tgaatatttcacaaaaatgggctcataagttacgtagcctcctgtgactggcttccttcacttgtcttgttttcaagattcagcaatgttttagcatatagcagtgctttattcattttatgaccaaataatattctattgtaggaaaaaactatatgttgtttctccattcattggtcgatggacatttTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30300299 423 + 173848474 aaaatacacataaacacaaagga-tac-----caccgtaaccatt-taaa----gtgcacaatgcagtgacaattcgtatgttcacaatgttatgtaaccatcatcactctctagttccagagtgtttttatcacctcaggggaaactctgcacccattaagcagtcaccctccatttccatctgccagcagaccctgtcgccacaaatccactttctttctctatcgacttgcctctta--tgaatatttcacaaaaatgggctcataagttacgtagcctcctgtgactggcttccttcacttgtcttgttttcaagattcagcaatgttttagcatataccagtgctttattcattttatgaccaaataatattctattgtaggaaaaaactatatgttgtttctccattcattggtcgatggacatttTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6108659 422 +   6154872 aaaatacacataaacacaaagga-tac-----caccgtaaccatt-taaa----gtgcacaatgcagtgacaattcgtatgttcacagtgttatgtaaccatcatcactctctagttccagagtgtttttatcacctcagggggaactctgcacccattaagcagtcaccctccatttccacctgccagcagaccctgtcgccacaaatccactttctttctctatcgacttgcctctta--tgaatatttcac-aaaatgggctcataagttacgtagcctcctgtgactggcttccttcacttgtcttcttttcaagattcagcaatgttttagcatataccagtgctttattcattttatgaccaaataatattctattgtaggaaaaaactatatgttgtttctccattcattggtcgatggacatttTCTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30199910 424 + 172585720 aaagtatacacttacacaaaatt-tac-----caccgtacccattgtagaatgggtgtacaatgcagtgacaat-----gcttcacaatgttatgtagccatcatcactctctagttccagagta-cttcaccacctcaggggaaattctgcacccattaagcagtcactctccatttcctcctgccaccagaccctgttgccacaagtctgctttctttctctatacattggtctcttggctgaagatttcacaaaaatggtttcataaaatatgtatccttttgtgactggcttccttcacttatcacgttttcaagattcagcaatgttgtagcatgtatcagcgcttcattccttttatggccaaatcatattccattgtagaaatatactacatgctatttattcattcatcggtcaatgggcattttctt
i rheMac8.chr4             C 0 I 330
s macFas5.chr4             29864006 429 - 170955103 aaagtatacacttacacaaaatt-tac-----caccgtacccattgtagaatgggtgtacaatgcagtgacaattagtaggttcacaatgttatgtagccaccatcactctctagttgcagagta-tttcaccacctcaggggaaattctgcacccattaagcagtcactctccatttcctcatgccaccagaccctgttgccacaagtctgctttctttctctatacattggtctcttggctgaagatttcacaaaaatgggttcataaaatatgtatccttttgtgactggcttccttcacttatcacgttttcaagattcagcaatgttgtagcatgtatcagcgcttcattccttttatggccaaatcatattccattgtagaaatatactacatgctatttattcattcatcggtcaatgggcattttctt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     659561 429 +    766320 aaagtatacacgaacacaaaatt-tac-----caccgtacccattgtagaatgggtgtacaatgcagtgacaattagtaggttcacaatgttatgtagccatcatcactctctagttccagagta-tttcaccacctcaggggaaattctgcacccattaagcagtcactctccatttcctcctgccaccagaccctgttgccacaagtctgctttctttctctatacattggtctcttggctgaagatttcacaaaaatgggttcataaaatatgtatccttttgtgactggcttccttcacttatcacgttttcaagattcagcaatgttgtagcatgtatcagtgcttcattccttttatggccaaatcatattccattgtagaaatatactacatgctatttattcattcatcagtcaatgggcatttTCTT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29115549 429 -  71996105 aaagtatacacgaacacaaaatt-tac-----cactgtacccattgtagaatgggtgtacaatgcagtgacaattagtaggttcacaatgttatgtagccatcatcactctctagttccagagta-tttcaccacctcaggggaaattctgcacccattaagcagtcactctccatttcctcctgccaccagaccctgtcaccacaagtcagctttctttctctatacattggtctcttggctgaagatttcacaaaaatgggttcatgaaatatgtatccttttgtgactggcttccttcgcttattatgttttcaagattcagtaatgttgtagcatgtatcagtgcttcattccttttatggccaaatcatattccattgtagaaatatactacatgttgtttattcattcgtcggtcaatgggcatttCCtt
i chlSab2.chr17            C 0 I 329
s aotNan1.NW_018496904v1     163224 410 -    383796 aaaatgtacatgagcacaaaagtgtacatgaacactgtaaccatt-ttaa----gtgtacattgcagtgacaattagtagattcacaatgttatgcaaccatcatcactccccagttccagaatgtttttgtcacctcaggggaaactctgcacctattaatcagtcaccctccatttccatctgccaccagaccctgtcaccacaaatccactttctttctttatagatttgcttcttc--taaatatttcacagaaatgggttaataaattacgtagccttctgtaactgaattccttcacttatcatgttttcaagattcaggcatgttttatcatgtaccactgctttattatttttatggccaaataa-------------------actatatgttgtttctccattcatcagtcgatggacatttTCTT
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=3276.000000
s hg38.chr6_GL000254v2_alt  1104458 1 +   4827813 T
s panTro5.chr6             30070079 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30300722 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6109081 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30200664 1 + 172585720 T
i rheMac8.chr4             I 330 C 0
s macFas5.chr4             29864435 1 - 170955103 t
i macFas5.chr4             C 0 I 2283
s cerAty1.NW_012002711v1     659990 1 +    766320 T
i cerAty1.NW_012002711v1   C 0 I 95561
s chlSab2.chr17            29116307 1 -  71996105 T
i chlSab2.chr17            I 329 C 0
s aotNan1.NW_018496904v1     163634 1 -    383796 T
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=53978.000000
s hg38.chr6_GL000254v2_alt  1104459 32 +   4827813 TAAATCAAATAGGAAAAACAAGAGAGGAATTA
s panTro5.chr6             30070080 32 + 175400573 TAAATCAAATAGGAAAAACAAGAGAGGAATTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30300723 32 + 173848474 TAAATCAAATAGGAAAAACAAGAGAGGAATTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6109082 32 +   6154872 TAAATCAAATAGGAAAAACAAGAGAGGAATTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30200665 32 + 172585720 TAAACCAAATAGGAAAAACAAAAGAGGAATTA
i rheMac8.chr4             C 0 I 1958
s chlSab2.chr17            29116308 32 -  71996105 TAAACCAAATAGGAAAAACAAAAGAGGAATTA
i chlSab2.chr17            C 0 N 0
s aotNan1.NW_018496904v1     163635 30 -    383796 TAAATCAAGTAGGAAAAAT--GAGAAGAATTa
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e cerAty1.NW_012002711v1     659991 95561 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=514218.000000
s hg38.chr6_GL000254v2_alt  1104491 635 +   4827813 CAAATATATATATGTGTGTGTGTATATATAtatgtcttgtagggttgagacaatctcagtcagctttttttaacctgtgaatgtcgtgatttctccatcatttctgaaggagagttttgcagacatacaattcttggttgatagtccttttactttctcagctttaaatttgtcatcccaacgcctcctgaaccccatggtttctgatgaaaatttgtatgttaatcttattgaggatccattgtacctgaaaagttccttctctgttattgctttcaagatggtctgtttgtcattggtg-tagactggttgattataacgtctctcagtgtggacttcta-aaattcttgctgcttaaaatgtatcaagtttgttggatgagtaaaattatatttttcatcaaatttaggagatttgaagttattattcctccaaatagccattcttctttttctctctc----ctttctttgaggattcccaaaatgcatatgcttggtgttgtctcacagttttcttaagttctgttcatttttcttcataatttttttttatttctgcacctcaaactggataatttcaattgtcttacctttaagcttgccgattcttcattctgcatagtgaaagttgcttttg
s panTro5.chr6             30070112 635 + 175400573 CAAATATATATGTGTGTGTGTGTATATATAtatgtcttgtagggttgagacaatctccgtcagctttttttaacctgtgaatgtcgtgatttctccatcatttctgaaggagagttttgcagacatacaattcttggttgatagtccttttactttctcagctttaaatttgttatcccaatgcctcctgaaccccatggtttctgatgaaaatttgtatgttaatcttattgaggatccattgtacctgaaaagttccttctctgttattgctttcaagatggtctgtttgtcattggtg-tagactggttgattataacgtctctcagtgtggacttcta-aaattcttgctgcttaaaatgtatcaagtttgttggatgagtaaaattatatttttcatcaaatttaggagatttgaagttattattcctccaaatagccattcttctttttctctctc----ctttctttgaggattcccaaaatgcatctgcttggtgttgtctcacagttttcttaagttctgttcatttttcttcataatttttttttatttctgcaccacaaactggataatttcaattgtcttacctttaagcttgccgattcttcattctgcatagtgaaagttgcttttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30300755 635 + 173848474 CAAATATATATGTGTGTGTGTGTATATATAtatgtcttgtagggttgagacaatctcagtcagctttttttaacctgtgaatgttgtgatttctccatcatttctgaaggagagttttgcagacatacaattcttggttgatagtccttttactttctcagctttaaatttgttatcccaatgcctcctgaaccccatggtttctgatgaaaatttgtatgttaatcttattgaggatccattgtacctgaaaagttccttctctgttattgctttcaagatggtctgtttgtcattggtg-tagactggttgattataacgtctctcagtgtggacttcta-aaattcttgctgcttaaaatgtatcaagtttgttggatgagtaaaattatatttttcatcaaatttaggagatttgaagttattattcctccaaatagccattcttctttttctctctc----ctttctttgaggattcccaaaatgcatatgcttggtgttgtctcacagttttcttaagttctgttcatttttcttcataattttttttaatttctgcacctcaaactggataatttcaattgtcttacctttaagcttgccgattcttcattctgcatagtgaaagttgcttttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6109114 634 +   6154872 CAAATATATATATGTGTGTGTGTATATATAtatgtcttgtagggttgagacaatctcagtcagcttttcttaacctgtgaatgtcgtgatttctccatcatttctgaaggagagttttgcagacatgcaa-tcttggttgatagtccttttactttctcagctttaaatttgtcatcccaacgcctcctgaaccccatggtttctgatgaaaatttgtatgttaatcttattgaggatccattgtacctgaaaagttccttctctgttattgctttcaagatggtctgtttgtcattggtg-tagactggttgattataacgtctctcagtgtggacttcta-aaattcttgctgcttaaaatgtatcaagtttgttggatgagtaaaattatatttttcatcaaatttaggagatttgaagttattattcctccaaatagccattcttctttttttctctc----ctttctttgaggattcccaaaatgcatatgcttggtgttgtctcacagttttcttaagttctgttcatttttcttcataatttttttttatttctgcacctcaaactggataatttcaattgtcttacctttaagcttgccaattcttcattctgcatagtgaaagttgcttttg
i gorGor5.CYUI01015250v1   C 0 C 0
s aotNan1.NW_018496904v1     163665 632 -    383796 cacacacacactcacacacatacacacacacacacaTTGTAGGGTTGAgacaatctctctcagctttttttaacctgtgaatgtcttaatttctccactatttctgaaggagagggttgtaggcatacaattcttgcctgtcagtccttttactttcttaactttaaatttgtcatcccagtgcctcctgaatcccatggtttctgacaagaagttgtatgttaatcttattgaggatccattgtacttgaaaagtttcttctctgttattgctttcaacacagtctgtt----gttggtgtttgactggttgattataatgtctctcagtgtggacatttagaaattttcactgcttaagatttatcgagtgtgttggatgtgtagattcatatttttcatgaaatttgggaggcttggagtga-tatttctccaaaaagccattcttcttttgctccctccctgctttctttgaggactcccaaagtgcctgtgcttgg---tgtctcactgatttcttaagttccgtttgtttttcttcataattttttttc-tttcaacacctcaaactggatgatttcaattgtcttatctttatgcttgctgactcttcattctgcatagtgaaagctgcttttg
i aotNan1.NW_018496904v1   C 0 I 5
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e cerAty1.NW_012002711v1     659991 95561 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=29937.000000
s hg38.chr6_GL000254v2_alt  1105126 57 +   4827813 taaaaaagtaaatagtaaatttactctagtaaaatatagtaaaaaatagtaaaatta
s panTro5.chr6             30070747 57 + 175400573 taaaaaagtaaatagtaaatttactctagtaaaatatagtaaaaaatagtaaaatta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30301390 57 + 173848474 taaaaaagtaaatagtaaatttactctagtaaaatatagtaaaaaatagtaaaatta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6109748 56 +   6154872 taaaaaagtaaatagtaaatttactctagtaaaatatagtaaaaaatagtaaaa-ta
i gorGor5.CYUI01015250v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     164297  5 -    383796 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e cerAty1.NW_012002711v1     659991 95561 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=383147.000000
s hg38.chr6_GL000254v2_alt  1105183 466 +   4827813 ctctagtaaatttttcatttcagttattgcacttttcagctccaaaatttctatttggtttctttttaaactttctatctttttattgatgttctctatttgagttaagatagttcttctgatttcctttag-ttttttgcccatagtttcctttagctctgtgaacatatttaag-cagtcaattcaaagttgtttgtccagtaagtatgttcaatggcctttctcaggaacagtttctgtcaattcctcttttttcttgagaatgggtcttactgtctagtttaattgcatacctcatttttattttgaatactaacatgtggtgactttgaaaatcatgttttctaaactatttttgtatagactgtattctttattgtgtgtcatcactgaagtctctattctgtaagcttagtggtcaactcatgatttgatagatatttcctgaaacatcttcagccaaaaa
s panTro5.chr6             30070804 465 + 175400573 ctctagtaaatttttcatttcagttattgcacttttcagctccaaaatttctatttggtttctttttaaactttctatctttttattgatgttctctatttgagttaagatagttcttctgatttcctttag-ttttttgcccatagtttcctttagctctgtgaacatatttaag-cagtcaattcaaag-tgtttgtccagtaagtatgttcaatggcctttctcaggaacagtttctgtcaattcctcttttttcttgagaatgggtcttactgtctagtttaattgcatacctcatttttattttgaatactaacatgtggtgactttgaaaatcatgttttctaaactatttttgtatagactgtattctttattgtgtgtcatcactgaagtctctattctgtaagcttagtggtcaactcatgatttgatagatatttcctgaaacatcttcagccaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30301447 465 + 173848474 ctctagtaaatttttcatttcagttattgcacttttcagctccaaaatttctatttggtttctttttaaactctctatctttttattgatgttctctatttgagttaagatagttcttctgatttcctttag-ttttttgcccatagtttcctttagctctgtgaacatatttaag-cagtcaattcaaag-tgtttgtccagtaagtatgttcaatggcctttctcaggaacagtttctgtcaattcctcttttttcttgagaatgggtcttactgtctagtttaattgcatacctcatttttattttgaatactaacatgtggtgactttgaaaatcatgttttctaaactatttttgtatagactgtattctttattgtgtgtcatcactgaagtctctattctgtaagcttagtggtcaactcatgatttgatagatatttcctgaaacatcttcagccaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6109804 458 +   6154872 ctctagtaaatttttcatttcagttatttcacttttcagctccaaaatttctatttggtttctttttaaactt----tctttttattgatg-tctctatttgagttaagatagttcttctgatttcctttag-ttttttgcccatagtttcctttagctctgtgaacatatttaag-ccgtcaattcaaag-tgtttgtccagtaagtatgttcaatggcctttctcaggaacagtttctgtcaattcctcttttttcttgagaatgggtcttactgtctagtttaattgcatacctcatttttattttgaatactaac--gtggtgtctttgaaaatcatgttttctaaactacttttgtatagactgtattcttcattgtgtgtcatcactgaagtctctattctgtaagcttagtggtcaactcatgatttgatagatatttcctgaaacatcttcagccaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s aotNan1.NW_018496904v1     164302 459 -    383796 ctctagtgaccttttcattttagttattgcacttttcagcttcaaaatttctacttggtctctctttaaactt----tctttttattaatgttctctatttgagttaacatagttcttctgatttcctttagtttttttgcccatagtttcctttagttctattaccgtatttaagactgtctatttaaag-tgcttttccagtaaatatgttcaatgacctttctcaggaattgtttct----atttctcttttttcctgagaatggatcttactgtctagtgtaattggatccctcatttttattttgaatactatcatgtggtagctttggaaatcacattttctaaactatttttgtatacactgtattctgtactgtgtgtaatcactgaaatctctattttgttagctcagtggtcaactcatgatttgacagatatttccttaaacatctttagtcaaaaa
i aotNan1.NW_018496904v1   I 5 I 973
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e cerAty1.NW_012002711v1     659991 95561 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=770724.000000
s hg38.chr6_GL000254v2_alt  1105649 1412 +   4827813 gaaataagaaaagaaaattcaatctttttatctgggctctctgtgtgttttggggcatgccctcaacactctgctgggcagtttacaatactgctttggccttcatttcctacttgtgcagatattgaaagttagcaagaggtgtgaacacagggcattctcaggtgctttgtgagtctgtgcgacatactggtcatggaggaggctatacagattcccagggatatggaagcttttcaaaacccatattcccatctcactcacccagtttctcctccaggcttttctgtatgtctattacctttctcatgtaatatatttttgccccaagggggcagctgctggttcagtggcacttaaatggttttagcagatgccctctgcctctgtgacctaagagagttctgagtagggaaaataaatgcaaaccatttattttctttttctttcttttttttctttttttagacaaggtcttgctctgaagcccaagctggagtgcagttgcacgatcctggctcactgtagcctcaacctcctgggcttaagcaatcctcccacctcagcctcttgagtagctgagactacaggcacatgccataatgcccagttaatttttgtattttttgtagaaatggagtttcaccatgttgtctaggctggtctcaaactcctgaactcaagaaatgcacccagctgagcttcccaaagtgctgtgattacaggcatgagtcaccatgcccagcccaatgtaagccatttcttatcatccttcacggagtcacccaacaggaaaaggtagacaaccacaacactttgagaacatggtccactcggctcccactggcattggagcccacactaaggaaccaggctgctgtcttcaagatcactactgacttgaacagggaggaatgggccaagggtaagatatggtgccacaaagctctgctcctgagttccagttgatttttctggacttgctaggttgcaataaacctttgatgatttttcagggttccaatgcagttgattctTTATCAACCCaatcagaatatctggtggtaggtccaggaattcttgctttaacagctctccgagggaA----tttttttttttttttttttgatggagttttgctcttgttgcccagggtggagtgcaatggcatgatcccggctaactgcaacctctgcctcccgggttcaagcgattctccttcctcacctcccgagtagctgggactacaggcgcgagccaccacacccagctaattttgtatatttagtagagactgggattctccatgttgatcagtctggtctcgaactcctgacctcaggtgatccccccacctcggcctcccaaagtgctgggattacaggcatgagccaccatgcccagccAAGGGATTT
s panTro5.chr6             30071269 1416 + 175400573 gaaataagaaaagaaaattcaatctttttatctgggctctctgtgtgttttggggcatgccctcaacactctgctgggcagtttacaatcctgctttggccttcatttcctacttgtgcagatattgaaagttagcaagagttgtgaacacagggcattctcaggtgctttgtgagtctgtgcgacatactgatcatggaggaggctatacagattcccagggatatggaagcttttcaaaacccatattcccatctcactcacccagtttctcctccaggcttttctgtatgtctattaccttcctcatgtaatatatttttgccccaagggggcagctgctggttcagtggcacttaaatggttttagcagatgccctctgcctctgtgacctaagagagttctgagtagggaaaataaatgcaaaccatttattttctttttctttcttttttttctttttttagacaaggtcttgctctgaagcccaagctggagtgcagttgcacgatcctggctcactgtagcctcaacctcctgggcttaagcaatcctcccacctcagcctcttgagtagctgagactacaggcacatgccataatgcccagttaatttttgtattttttgtagaaatggagtttcaccatgttgtctaggctggtctcaaactcctgaactcaagaaatgcacccagctgagcttcccaaagtgctgtgattacaggcatgagtcaccatgcccagcccaatgtaagccatttcttatcatccttcacggagtcacccaacaggaaaagggagacaaccacaacactttgagaacatggtccactcggctcccactggcattggagcccacactaaggaaccaggctgctatcttcaagatcactactgacttgaacagggaggaatgggccaagggtaagatatgttgccacaaagctctgctcctgagttccagttgatttttctggacttgctaggttgcaataaacctttgatgatttttcagggttccaatgcagttgattctTTatcaacccaatcagaatatctggtggtaggtccaggaattcttgctttaacagctctccgagggaAtttttttttttttttttttttttgatggagttttgctcttgttgcccaggctggagtgcaatggcgtgatcccggctaactgcaacctctgcctcccaggttcaagcgattctccttcctcacctcccgagtagctgggactacaggtgcgagccaccacacctggctaattttgtatatttagtagagactgggattctccacattggtcagtctggtctcgtactcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggcatgagccaccatgcccagccAAGGGATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30301912 1413 + 173848474 gaaataagaaaagaaaattcaatctttttatctgggctctctgtgtgttttggggcatgccctcaacactctgctgggcagtttacaatcctgctttggccttcatttcctacttgtgcagatattgaaagttagcaagagttgtgaacacagggcattctcaggtgctttgtgagtctgtgcgacatactgatcatggaggaggctatacagattcccagggatatggaagcttttcaaaacccatattcccatctcactcacccagtttctcctccaggcttttctgtatgtctattaccttcctcatgtaatatatttttgccccaagggggcagctgccggttcagtggcacttaaatggttttagcagatgccctctgcctctgtgacctaagagagttctgagtagggaaaataaatgcaaaccatttattttctttttctttc-tttttttctttttttagacaaggtcttgctctgaagcccaagctggagtgcagttgcacgatcctggctcactgtagcctcaacctcctgggcttaagcaatcctcccacctcagcctcttgagtagctgagactacaggcacatgccataatgcccagttaatttttgtattttttgtagaaatggagtttcaccatgttgtctaggctggtctcaaactcctgaactcaagaaatgcacccagctgagcttcccaaagtgctgtgattacaggcatgagtcaccatgcccagcccaatgtaagccatttcttatcatccttcacggagtcacccaacaggaaaagggagacaaccacaacactttgagaacatggtccactcggctcccactggcattggagcccacactaaggaaccaggctgctatcttcaagatcactactgacttgaacagggaggaatgggccaagggtaagatatgttgccacaaagctctgctcctgagttccagttgatttttctggacttgctaggttgcaataaacctttgatgatttttcagggttccaatgcagttgattctTTATCAACCCaatcagaatatctggtggtaggtccaggaattcttgctttaacagctctccgagGGTA-AtttttttttttttttttttgtattggagttttgctcttgttgcccaggctggagtgcaatggcatgatcccggctaactgcaacctctgcctcccaggttcaagcgattctccttcctcacctcccgagtagctgggactacaggtgcgagccaccacacctggctaattttgtatatttagtagagactgggattctccatgttggtcagtctggtctcgtactcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggcatgagccaccatgcccagccAAGGGA-TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6110262 1403 +   6154872 gaaataagaaaaaaaaattcaatctttttatctgggctgtctgtgtgttttggggcatgccctcaacactctgctgggcagtttacaatcctgccttggccttcatttcctacttgtgcagatattgaaagttagcaagaggtgtgaacacagggcattctcaggtgctttgtgagtctgtgtgacatactgatcatggaggaggctatacagattcccagggatatggaagcttttcaaaacccgtattcccatctcactcacccagtttctcctccaggcttttctgtatgtctattaccttcctcatgtaatatatttttgccccaagggggcagctgctggttcagtggcacttaaatggttttagcagatgccctctgcctctgtgacctaacagagttctgagtagggaaaataaatgtgaaccattta-tttctttttctttcttttttttctttttttagacaaggtcttgctctgaagcccaagctggagttcagttgcacgatcctggctcactgtagcctcaacctcctgggcttaagcaatcctcccacctcagcctcttgagtagctgagactacaggcacatgccataatgcccagttaagttttgtattttttgtagaaatggagtttcaccatgttgtctaggctggtctcaaactcctgaactcaagaaatgcacccagctgagcttcccaaagtgctgtgattacaggcatgagtcaccatgcccagcccaatgtaagccatttcttatcatccttcacagagtcacccaacaggaaaaggtagacaaccacaacactttgagaacatggtccactcggctcccactggcattggaacccacac-aaggaaccaggctgctgtcttcaagatcactactgacttgaacagggaggaatgggccaagggtaagatatggtgccacaaagctctgatcctgagttccagttgatttttctggacttgcta-gttgcaataaacctttgatgatttttcagggttccaatgcagttgattctTTATCAACCCAATCAGCATATCTGGTGGTAGGTCCAGGAATTCTTGCTTTAACAGCTCTCCGAGGGAA--------tttttttttttttttgatggagttttgctcttgttgcccaggctggagtgcaatggcgtgatcccggctaactgcaacctctgcctcccgggttcaagcgattctccttcctcacctcccaagtagctgggactacaggcacgagccaccacacctggctaattttgtatatttagtagagactgggattctccatgttggtcagtctggtctcgaactcctgacctcaggtgatcc-cccacctcggcatcccaaagtgctgggattacaggcatgagccaccatgcccagccACGGGA-TT
i gorGor5.CYUI01015250v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     164761  973 -    383796 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e calJac3.chr4             30202681 75183 + 171630274 I
e colAng1.NW_012115566v1    2961712  699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e cerAty1.NW_012002711v1     659991 95561 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=7352.000000
s hg38.chr6_GL000254v2_alt  1107061 10 +   4827813 TTTTTTATAG
s panTro5.chr6             30072685 10 + 175400573 TTTTTTATAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30303325 10 + 173848474 TTTTTTATAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6111665 10 +   6154872 TTTTTTATAC
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chr4             30277864 10 + 171630274 ttttctatac
i calJac3.chr4             I 75183 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     164761 973 -    383796 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e cerAty1.NW_012002711v1     659991 95561 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=12555.000000
s hg38.chr6_GL000254v2_alt  1107071 9 +   4827813 TGATGTTTT
s panTro5.chr6             30072695 9 + 175400573 TGATGTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30303335 9 + 173848474 TGATGTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6111675 9 +   6154872 TGATGTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chr4             30277874 9 + 171630274 tgatgtttt
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1     165734 9 -    383796 TGATGTTTT
i aotNan1.NW_018496904v1   I 973 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e colAng1.NW_012115566v1    2961712 699 -   3067355 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e cerAty1.NW_012002711v1     659991 95561 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=62742.000000
s hg38.chr6_GL000254v2_alt  1107080 22 +   4827813 ACAAGCACATTGTCTCTGTGCA
s panTro5.chr6             30072704 22 + 175400573 ACAAGCACATTGTCTCTGTGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30303344 22 + 173848474 ACAAGCACATTGTCTCTGTGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6111684 22 +   6154872 ACAAGCACATTGTCTCTGGGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     755552 22 +    766320 ACAAGCACATTGCCGCTGTGGA
i cerAty1.NW_012002711v1   I 95561 C 0
s chlSab2.chr17            29236939 22 -  71996105 ACAAGCACATTGCCGCTGTGGA
i chlSab2.chr17            N 0 C 0
s colAng1.NW_012115566v1    2962411 22 -   3067355 ACAAGCATATTGCCGCTGTGGA
i colAng1.NW_012115566v1   I 699 C 0
s calJac3.chr4             30277883 22 + 171630274 acaagcacATTGTCTCTGTGCA
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1     165743 22 -    383796 ACAAGCACATTGTCTCTGTGCA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e manLeu1.NW_012101121v1      41409 2555 +    273075 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=18058.000000
s hg38.chr6_GL000254v2_alt  1107102 8 +   4827813 GAGGTGGC
s panTro5.chr6             30072726 8 + 175400573 GAGGTGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30303366 8 + 173848474 GAGGTGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6111706 8 +   6154872 GAGGTGGC
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     755574 8 +    766320 GGGGAGGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29236961 8 -  71996105 GGGGAGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      43964 8 +    273075 GAGGGGGT
i manLeu1.NW_012101121v1   I 2555 C 0
s colAng1.NW_012115566v1    2962433 8 -   3067355 GGGGAGGT
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30277905 8 + 171630274 GGTCTGGC
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1     165765 8 -    383796 GGGCTGGC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e cebCap1.NW_016107755v1     403476 1456 -   1771730 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1063359.000000
s hg38.chr6_GL000254v2_alt  1107110 316 +   4827813 CCTTGGAGTTCCTATGCCACTATGTTCTCTGATGTCACTCCTCAGCCACCTTTGAATTGTGCTTATGCATCAGAATTCCTGATCTGCTAAGTACTTCCAGGAAactcattcaaatggtaaaca-tcattaagcacctaccttattctgggtactgtgctctatggagttga--------------gcctca-gataaaagaatcaaacttccttggacttcatagaagtcaaaggt--gggg-gtgggaagataaataaagaaatTATAGCACAGCATGTTAT-G-TATTTTACATGA-CTTTTTTCTTTGAAAGCTACATTATTAATA-TTTTATGAC---
s panTro5.chr6             30072734 316 + 175400573 CCTTGGAGTACTTATGCCACTATGTTCCCTGATGTCACTCCTCAGCCACCTTTGAATTGTGCTTATGCATCAGAATTCCTGATCTGCTAAGTACTTCCAGGAAactcattcatatggtaaaca-tcattaagcacctaccttattctgggtactgtgctctatggagttga--------------gtctca-gataaaagaatcaaacttccttggacttcatagaagtcaaaggt--gggg-gtgggaagataaataaagaaattataacacagcatgTTAT-G-TATTTTACATGA-CTTTTTTCTTTGAAAGCTACATTATTAATA-TTTTATGAC---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30303374 316 + 173848474 CCTTGGAGTACTTATGCCACTATGTTCCCTGATGTCACTCCTCAGCCACCTTTGAATTGTGCTTATGCATCAGAATTCCTGATCTGCTAAGTACTTCCAGGAAactcattcatatggtaaaca-tcattaagcacctaccttattctgggtactgtgctctatggagttga--------------gtctca-gataaaagaatcaaacttccttggacttcatagaagtcaaaggt--gggg-atgggaagataaacaaagaaatTATAACACAGCATGTTAT-G-GATTTTACATGA-CTTTTTTCTTTGAAAGCTACATTATTAATA-TTTTATGAC---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6111714 315 +   6154872 CCTTGGAGTTCTTATGCCACTATGTTCTCTGATGTCACTCCTCAGCCACCTTTGAATTGTG-TTATGCATCAGAATTCCTGATCTGCTAAGTACTTCCAGGAAactcattcatatggtaaaca-tcattaagcacctaccttattctgggtactgtgctctatggagttga--------------gtctca-gataaaagaatcaaacttccttggacttcatagaagtcaaaggt--gggg-gtgggaagataaataaagaaattataacacagcatgTTAT-G-TATTTTACATGA-CTTTTTTCTTTGAAAGCTACATTATTGATA-TTTTATGAC---
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     755582 317 +    766320 CCTTGGAGTTCTTATGCCATCATGTTCTTTTGTGTCACTCCTCAGCCACTTTTGAATTGTGCTTATGCGTCA-CATTCCTGATCTGCTAAGTACTTTCAAGAAAGTTATTCATATGGTCAAAATTCATCACGCACCTAACTTGTTCTTGGGGCTGTACTCTACGGAGTTGA---------------TCTCA-GAAAAAAGAATCAAA-TTCGTTGGACCTCGTAGATGGCACAGGT--GGGGGGTTGGAATACGGATAAGGAAATCATAACACAACATGTTACAG-tattttatattatttttttcctttgaatgctacattattaata-ttttatAAT---
i cerAty1.NW_012002711v1   C 0 I 25
s chlSab2.chr17            29236969 316 -  71996105 CCTTGGAGTTCTTATGCCACCATGTTCTTTTGTGTCACTCCTCAGCCACTTTTGAATTATGCTTATGCGTCA-CATTCCTGATCTGCTAAGTACTTTCAAGAAAGTTATTCATATGGTCAAAATTCATCAAGCACCTAACTTGTTCTTGGGGCTGTACTCTACGGAGTTGA---------------TCTCA-GAAAAAAGAATCAAA-TTCGTTGGACTTCATAGATGGCACAGGT--GGGGAGTTGGAATACGGGTAAGGAAATCATAACACAACAGGTTACTG-TATTTTATATTA-TTTTTTCCTTTGAATGCTACATTATTAATA-TTTTATAAT---
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012101121v1      43972 317 +    273075 CCTTGGAGTTCTCATGCCACCATGTTCTTTGGTGTCACTCCTCAGCCACTTTTGAATTGTGCTTATGTATCA-CATTCCTTATCCGCTAAGTACTTTCAAGAAAGTTATTCATATGGTCAAAATTCATCACGCACCTAACTTGTTCTTGAGGCTGTACTCTACGGAGTTGA---------------TCTCA-GAAAAAAGAATCAAA-TTCGTTGGACCTCATAGATGGCACAGGT--GGGGGGTTGGAATATGGGTAAGGAAATCATAACACAACATGTTACAG-tattttatattatttttttcctttgaatgctacattattaata-ttttatAAT---
i manLeu1.NW_012101121v1   C 0 I 1
s colAng1.NW_012115566v1    2962441 310 -   3067355 CCTTGGAGTTCTTATGCCACTATGTTCTTTTGTGTCACTCCTCAGCCACTTTTGAATTGTGCTTATGCATCA-CATTCCTGATCTGCTAAGTACTTTCAAGAAAGTTATTCCTATGGTCACAATTCATCAAGCACCTAACTTGTTCTTGGGGCTGTACTCTACGGAGTTGA---------------TCTCA-GAAAAAAGAATCAAA-TTCGTTGGACCTCATAGATGGCACAGGT--AGGG----GGAATATGGATAAGGAAATCATAACACAACATGTTACAG-tattttatat---ttttttcttttgaatgctacattattaata-ttttataAT---
i colAng1.NW_012115566v1   C 0 I 1
s calJac3.chr4             30277913 300 + 171630274 CCTTGGAATTCTTATGTCACCATGTTTTTTGATGTGACTCCTCAGTCACTTTTGAATTGTGCTTATGCACCACAATTTCTGACCTGCTAAATACTTTCACAAAAGTCAACCATATGGTAAACATTCATCA------------ATTCTGGGTACTGTGCTCTATGGAATTGAGTCTATGGAGCTGAGTCTCA-AGAAAAAGAATCAAACTTCCTTGGACTTCATAGAAGTCAAGAGT--GAGG-CTGCAAG-----------------------GATAAGTTAT-G-TATTTGACATGA-CTTTTTTCTTTGAAAGCAACATTATTAATATTTTTATAATGAC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     404932 313 -   1771730 CCTTGGAGTTCTTATGCCATCGTGTTCTTTGGTATCACTTCTCAGCCACTTTTGAATGGTGTTTATGCATCACAATTCCTCATCTGCTAAGTACTTTCAGGAAAGTTATAAATGTGGCAGAAACTCATCAAGCACCTAACTTATTCTTGATGCTGTACTCTATGGAGTTGA---------------TCTCAGAAAAAAAAAACTAAACTTGGTTGGACCTCATAGATGGCACAGGTGGGGGG-TTGGAAG-ATGGGTAAGGAAATTACAACACAATATGTTAC-ACTATGTTATATGA-C---------TGAATGCTACATTATTAACA-TTTTATAATGAC
i cebCap1.NW_016107755v1   I 1456 C 0
s aotNan1.NW_018496904v1     165773 318 -    383796 TCTTGGAGTCCTTATGCCACCATGTTCCCTGATGTCACTCCTCAGCCACTTTTGAATTGTGCTTATGCACCACAATTTCTGATCTGCTAAGTACTTTCACAAAACTCACCCATACGATAAACATTCATCA------------ATTCTGGGTACTGTGCTCTGTGGAGTTGAGTCTATGGAGCTGAGTTTCA-AGAAAAAGACTCAAACTTCCTTGGACTTCATAGAAGTCAAGAGT--GAGG-GTGCAAGGATAAATAAAGAAATTATAACACAACATGTTAT-A-TATTTGACATGA-CTTTTTTCTTTGAAAGCTACATTATTAATA-TTTTAT----AC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=124043.000000
s hg38.chr6_GL000254v2_alt  1107426 46 +   4827813 AGTACTGAGTTACATATACCAAAGATTACAAATTAAAATTTATGct
s panTro5.chr6             30073050 46 + 175400573 AGTACTGAGTTACATATATCAAAGATTACAAATTAAAAtttctgct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30303690 46 + 173848474 AGTACTGAGTTACATATATCAAAGATTACAAATTAAAAtttctgct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6112029 46 +   6154872 AGTACTGAGTTACATATGCCAAAGATTACAAATTAAAAtttctgct
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            29237286 42 -  71996105 ACTACTG----ACAGGCACCAATGATTACAAATTAAAGtttctgct
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012101121v1      44290 42 +    273075 ACTCCTG----GCAGGTACCAATGATTACAAATTAAAGtttctgct
i manLeu1.NW_012101121v1   I 1 C 0
s colAng1.NW_012115566v1    2962752 42 -   3067355 ACTACTG----ACAGGTACCAATGATTACAAATTAAAAtttctgct
i colAng1.NW_012115566v1   I 1 C 0
s calJac3.chr4             30278213 46 + 171630274 AGTACTGAGATATATGTACCAATGATTACAAATTAAAATTTCTGTT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     405245 46 -   1771730 TGTACTGACTGACCTGTACCAATGATTACAAATTAAATtttctgct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     166091 45 -    383796 AGTACTGAGTAATGTGTACCAATGACTAC-AATTAAAAtttctgtt
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e cerAty1.NW_012002711v1     755899 25 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=191546.000000
s hg38.chr6_GL000254v2_alt  1107472 54 +   4827813 ttctttctctcttttgttcttacatatttctctgttcttGTAGATATTTTGAAA
s panTro5.chr6             30073096 54 + 175400573 ttctttctctctttcgttcttacatatttctctgttcttGTAGATATTTTGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30303736 54 + 173848474 ttctttctctctttcgttcttacatatttctctgttcttGTAGATATTTTGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6112075 54 +   6154872 ttctttctctctttctttcttacatatttctctgttcttGTAGATATTTTGAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     755924 54 +    766320 TGCTTTCTCTGTTTCTTTCTTATATATTTCTCTGTCTTTGTAAATATTTTTAGA
i cerAty1.NW_012002711v1   I 25 C 0
s chlSab2.chr17            29237328 46 -  71996105 ttctttctctgtttctttcttATATATTTCACTATTTTTAGA--------CTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      44332 54 +    273075 ttctttctctgtttctttcttatatatttctctgtctttGTAAATATTTTTAGA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2962794 50 -   3067355 ----ttctctgtttctttcttatatatttctctgtctttGTAAATATTTTTAGA
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30278259 50 + 171630274 TTCTTTCTC--TTTCATTCTTATATATTTCTCTGTTCTTGTAGATATTTTT--A
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     405291 54 -   1771730 ttcttcctctgtttctttcttatatatttctctgtctttGTAAATATTTTTACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     166136 52 -    383796 ttctttctc--tttcattcttatatatttctctgttctTGTAGATATTTTTAGA
i aotNan1.NW_018496904v1   C 0 I 24
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=78374.000000
s hg38.chr6_GL000254v2_alt  1107526 27 +   4827813 TTGGGTATTATGGAGACAGTGCAACAG
s panTro5.chr6             30073150 27 + 175400573 TTGGGTACTTTGGAGACAGTGCAACAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30303790 27 + 173848474 TTGGGTATTTTGGAGACAGTGCAACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6112129 27 +   6154872 TTGGGTATTTTGGAGATAGTGCAACAG
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     755978 27 +    766320 CTGGGCATTTTGGAGATAGTCCAACAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29237374 27 -  71996105 CTGGGCATTTTGGAGATAGTCCAACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      44386 27 +    273075 CTGGGCATTTTGGAGATAGCCCAACAG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2962844 27 -   3067355 CTGGGCATTTTGGAGACAGTCCAACAG
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30278309 25 + 171630274 GATGGCATTTTGGAG--AGTGCAAACA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     405345 27 -   1771730 GTGGGCATTTTGGAGATAGTCCAACAG
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     166188 24 -    383796 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=775386.000000
s hg38.chr6_GL000254v2_alt  1107553 196 +   4827813 tttcatttatatgataatgttttgttttacctttattcatcaaagagagatttgtcagctgcaaatttctagtttgacattggttttctctcagatctttgatgattatgttgcttctggctgctgt-ggctgacaggggatagtcagttacatttt-aaccagttgcttcttagaggatctgtgtttctcctgtggc
s panTro5.chr6             30073177 196 + 175400573 tttcatttatatgataatgttttgttttaactttattcatcaaagagagatttgtcagccacaaatttctagtttgacattggttttctctcagatctttgatgattatgttgcttctggctgctgc-ggctgacagggaatagtcagttacatttt-aaccagttgcttcctagaggatctgtgtttctcctgtggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30303817 196 + 173848474 tttcatttatatgataatgttttgttttacctttattcatcaaagagagatttgtcagccacaaatttctagtttgacattggttttctctcagatctttgatgattatgttgcttctggctgctgc-ggctgacagggaatagtcagttacatttt-aaccagttgcttcttagaggatctgtgtttctcctgtggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6112156 196 +   6154872 tttcatttatatgataatgttttgttttacctttattcatcaaagagagatttgtcagccgcaaatttctagtttgacattggttttctctcagatctttgatgattatgttgcttctggctgctgt-ggctgacagggaatagtcagttacatttt-aaccatttgcttcttagaggatctgtgtttctcctgtggc
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     756005 196 +    766320 tttcatttatacgatgatgttttgttttactcttattccttaaagagacatttgccagccacaaatttctgtttggacattggttttctctcagctc-ttgatcattatgcctcttctggctgctgt-ggctgacagggaaagaccgattacatcttaaaccagttgcttcttagatgatctgtgtttcttctgtggc
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29237401 197 -  71996105 tttcatttatacgataatattttgttttactcttattccttaaagagagatttgccagccacaaatttctggttggacattggttttctctcagctc-tcgatcattatgcctcttctggcagctgtgggctgacagggaaaaatcaattacatcataaaccagttgtttcttagatgatctgtgtttcttctgtggc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      44413 196 +    273075 tttcatttatacgatgatattttgttttactcttattccttaaagagagatttgccagccacaaatttctggttggacattggttttctctcagctc-ttgatcattatgcctcttccggctgctgt-ggctgaaagggaaagaccgattacatcttaaaccagttgcttcttagatgatctgtgtttcttctgtggc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2962871 196 -   3067355 tttcatttatacgatgatgttttgttttactcttattccttaaagagagatttgccagccacaaatttctggttggacattggttttctctcagctc-ttgatcattatgtctcttctggcggttgt-ggctgacagggaaaaatcaatcacatcttaaaccagttgcttcttagatgatctgtgtttcttctgtggc
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30278334 195 + 171630274 tttcatttatacaacaatgttttgttttacctttattcatgaaagagagattt-ccagcctcaagtctttagtttgacattggttttctgtcagatctttgatgatgatgtattttctgggtgctgt-ggctgagaggg-aaagtcagttacattttaacccagttgtttcttagatgatttgtgtttcttctgtggc
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     405372 197 -   1771730 tttcatttatacgatgatgttttgttttactcttattcatgaaagatgcatttgccagccccaaatttctagcttgacattggctttctctcagctctttgatgattatctctcttctggctgctgt-ggctgacagggaaaaattagttacatcttaacccagttgcttcttagacgatctgtgtttctcctctggc
i cebCap1.NW_016107755v1   C 0 N 0
s aotNan1.NW_018496904v1     166212 195 -    383796 tttcatttataaaataa--tttttttttacctttattcatgaaagagagatttgccagcctcaaatttttagtttaacatttgttttctgtcagatctttgatgatgatgtatcttctggctgctgt-ggctgagagggaaaagtcagttacattttaacccggttgtttcttagatgatctgtgtttcttctgtgac
i aotNan1.NW_018496904v1   I 24 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=226793.000000
s hg38.chr6_GL000254v2_alt  1107749 70 +   4827813 aaattttaagatatctgtttctctttaacatcttctgttccagtgcagtatgagtaaatgtggatctctt
s panTro5.chr6             30073373 70 + 175400573 aaattttaagatatctgtttctctttaacatcttcagttccagtgcagtatgagtaaatgtggatctctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30304013 70 + 173848474 aaattttaagatatctgtttctctttaacatcttcagttccagtgcagtatgagtaaatgtggatctctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6112352 70 +   6154872 aaattttaagatatctgtttctctttaacatcttcagttccagtgcagtatgagtaaatgtggatctctt
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     756201 70 +    766320 tacctttaagatgaccgtttccctttaacatctgaggttccagtgcagtgtgagtaaatgtggatctctt
i cerAty1.NW_012002711v1   C 0 I 105
s chlSab2.chr17            29237598 68 -  71996105 tacttttaagatgactgtttccctttaacatctgaggttccagtgcagtgtgagtaaatttgcatctc--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      44609 70 +    273075 tacttttaaggtgaccgtttccctttaacatctgaggttccagtgcagtgtgagtaaatgtggatctctt
i manLeu1.NW_012101121v1   C 0 I 2916
s colAng1.NW_012115566v1    2963067 69 -   3067355 tac-tttaagatgactatttccctttaacatctgaagttccagtgcagtgtgagtaaatgtggatctctt
i colAng1.NW_012115566v1   C 0 I 5597
s calJac3.chr4             30278529 70 + 171630274 tactttaaagatctctgcttctctttaacatgtgaagttccagtgcagtatgagtaaatgtggatctctt
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1     166407 70 -    383796 tactttaaagatctctgcttctctttaacatgtgaagttccagtgcagtatgagtaaatgtggatctctt
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=22035.000000
s hg38.chr6_GL000254v2_alt  1107819 12 +   4827813 tttattcaCAGT
s panTro5.chr6             30073443 12 + 175400573 tttattcacagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30304083 12 + 173848474 tttattcacagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6112422 12 +   6154872 tttattcacagt
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            29237666 12 -  71996105 ttCATTCACAGT
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30278599 12 + 171630274 tttattcaCGGT
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1     166477 12 -    383796 tttattcaCAGT
i aotNan1.NW_018496904v1   C 0 I 6
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e colAng1.NW_012115566v1    2963136 5597 -   3067355 I
e manLeu1.NW_012101121v1      44679 2916 +    273075 I
e cerAty1.NW_012002711v1     756271 105 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=7285.000000
s hg38.chr6_GL000254v2_alt  1107831 6 +   4827813 GCTATG
s panTro5.chr6             30073455 6 + 175400573 gctatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30304095 6 + 173848474 gctatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6112434 6 +   6154872 gctatg
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            29237678 6 -  71996105 GCTATG
i chlSab2.chr17            C 0 I 2776
s calJac3.chr4             30278611 6 + 171630274 ATTATG
i calJac3.chr4             C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     166489 6 -    383796 I
e colAng1.NW_012115566v1    2963136 5597 -   3067355 I
e manLeu1.NW_012101121v1      44679 2916 +    273075 I
e cerAty1.NW_012002711v1     756271 105 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=293877.000000
s hg38.chr6_GL000254v2_alt  1107837 580 +   4827813 ATACtgttaggtatgagttctaaatttctcttaaaataattaacatgtcagtatgttcaattctttgccctctacttttaaacttaacttcctcataaagcaaccttttttgatcacctgttccaccctgactcatcctgattacttgctccagcctgactcattctggttacctgctccaccctgactcattccagtcacctgctccaccctgactcattctgattacctgctccaccctgactcatcctgattacttgccccagcctgactcattccagttacctgcaccaccctgactcattctgatcacctgtttcactctctttaaattagccaatctgaattagtttagcctgtgcggtctaaccctagccaataggggaataacacagcagcaggggccacgtgcatcagggataagaaccccttccccttccttgtccaggggtgtgctcaccattgctccatctgtgagggcacacccttgtatagaagtaattgccttgctgagaagaaaaaaagaaaattttatatttgagtgctatttctttgtggcatcaagactttatttacaata
s panTro5.chr6             30073461 576 + 175400573 atactgttaggtatgagttctaaatttctcttaaaataattaacatgtcagtatgttcaattctttgccctctacttttaaacttaacttcctcataaagcaacc-tttttgatcacctgctccaccctgactcatcctgattacttgctccagcctgactcattctggttacctgctccaccctgactcattccagtcacctgctccaccctgactcattctgattacctgctccaccctgactcatcctgattacttgccccagcctgactcattccagttacctgctccaccctgactcattctgattacctgtttcactctctttaaattagccaatctgaattagtttagcctgtgcggtctaaccctagccaataggggaacaacacagcagcaggggccacatgcatcagggataagaaccccttccccttccttgtccaggggtgtgctcaccattgctccatctatgagggcacacccttgtatagaagtaattgccttgctgagaagaaaaa---aaaattttatattcgagtgctatttctttgtggcattgagactttatttacaata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30304101 575 + 173848474 atactgttaggtatgagttctaaatttctcttaaaataattaacatgtcagtatgttcaattctttgccctctacttttaaacttaacttcctcataaagcaacc-tttttgatcacctgctccaccctgactcatcctgattacttgctccagcctgactcattctggttacctgctccaccctgactcattccagtcacctgctccaccctgactcattctgattacctgctccaccctgactcatcctgattacttgccccagcctgactcattccagttacctgctccaccctgactcattctgattacctgtttcactctctttaaattagccaatctgaattagtttagcctgtgcggtctaaccctagccaataggggaacaacacagcagcaggggccacatgcatcagggataagaaccccttccccttccttgtccaggggtgtgctcaccgttgctccatctatgagggcacacccttgtatagaagtaattgccttgctgagaagaaaa----aaaattttatattcgagtgctatttctttgtggcattgagactttatttacaata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6112440 520 +   6154872 atactgttaggtatgagttctaaatttctcttaaaataattaacatgtcagtatgttcaattctttgccctctacttttaaacttaacttcctcataaagcaacgttttttgatcacctgctccaccctgactcatcctgattacttgctccagcctgactcattccggttacctgctccaccctgactcattccaatcacctgctccaccctgactcattctgattacctgctccaccctgactcatcctgatt--------------------------------------------------------acctgtttcactctctttaaattagccaatctgaattagtttagcctgtgcggtctaaccctagccaataggggaataacacagcagcaggggccacgtacatcagggataagaaccccttcccctgccttgtccaggggtgcactcaccattgctccatctgtgagggcacacccttgtatagaagtaattgccttgctgagaagaaaa----aaaattttatattcgagtgctatttctttgtggcatcgagactttatttacaata
i gorGor5.CYUI01015250v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     166489   6 -    383796 I
e calJac3.chr4             30278617   0 + 171630274 C
e colAng1.NW_012115566v1    2963136 5597 -   3067355 I
e manLeu1.NW_012101121v1      44679 2916 +    273075 I
e chlSab2.chr17            29237684 2776 -  71996105 I
e cerAty1.NW_012002711v1     756271 105 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=111197.000000
s hg38.chr6_GL000254v2_alt  1108417 99 +   4827813 ATACATTTCCTTAATATTTTAAGATAACCTCTTTCTGGAATGCCTCTTTCCATTTACTCACTTCTCTTCTTCTAGGAATTTAATTAGAGAAGAATTAAA
s panTro5.chr6             30074037 94 + 175400573 atacatttccttaatattttaagataacctctttctggaatgcctctttccatttactcatttctcttcttctaggaatttaattagac-----taacg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30304676 94 + 173848474 atacatttccttaatattttaagataacctctttctggaatgcctctttccatttactcatttctcttcttctaggaatttaattagac-----taacg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6112960 94 +   6154872 atacatttccttaatattttaagataacctctttctggaatgcctctttccatttactcacttctcttcttctaggaatttaattagac-----taatg
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chr4             30278617 94 + 171630274 ATACATTTACTTAATATCTTAAAATAACCTCTTTATGGAATGCTTTTTTCCATTTACTCACCTCTCATCTTCTAGGAATTTAATTAGAC-----TAATG
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1     166495 94 -    383796 ATACATTTGCTTAATATCTTAAAATAACCTCTTTATGGAATGCTTCTTTCCATTTTCTCACTTCTCATCATCTAAGAATTTAATTAGAC-----TAATG
i aotNan1.NW_018496904v1   I 6 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e colAng1.NW_012115566v1    2963136 5597 -   3067355 I
e manLeu1.NW_012101121v1      44679 2916 +    273075 I
e chlSab2.chr17            29237684 2776 -  71996105 I
e cerAty1.NW_012002711v1     756271 105 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=719820.000000
s hg38.chr6_GL000254v2_alt  1108516 369 +   4827813 TTAAACCTCATTCAACCACCATATACACTGTGGAATCCAAAATaatggcctcacacatatgtccaagccctaagacgcagaccatttagatatgttactttacacagcaaaagggactttgctgatatgattaagagcatggacctttagat-gtggagattattttgtattatttgagtggccccaatctgattgcatgatttctttaaCCTGGAGATGACTGGAGAAATATGGGTCAGat----ggagtgctgaatttcatctagaataatttcttaatctagtaaaataacatcatctctgttttttattctttaattaagtggcaaaatgcattaaaaggtttaaagtttaaatatccttgcattcttgg
s panTro5.chr6             30074131 372 + 175400573 ttaaacctcattcAAACACCATATACACTGTGGAATCCAAAATaatggcctcacacatatgtccaagccctaagacgcagaccatttagatatgttactttacacagcaaaagggactttgctgatatgattaagagcatggacctttagat-gtggagattattttgtattatttgagtggccccaatctaattgcatgatttctttaacctggagatgactggagaaatatgggtcagatggagggagtGCTGAATTTCATCTAGAATAATTTCTTAATCTAGTAAAATAACATCATCTCTG-TTTTTATTCTTTAATTAAGTGGCAAAATGCATTAAAAGGTTTAAAGTTTAAATATCCTTGCATTCTTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30304770 372 + 173848474 ttaaacctcattcAAACACCATATACACTGTGGAATCCAAAATaatggcctcacacatatgtccaagccctaagacgcagcccatttagatatgttactttacacagcaaaagggactttgctgatatgattaagagcatggacctttagat-gtggagattattttgtattatttgagtggccccaatctaattgcatgatttctttaacctggagatgactggagaaatatgggtcagatggagggagtgctgaatttcatctagaataatttcttaatctagtaaaataacatcatctctg-tttttattctttaattaagtggcaaaatgcattaaaaggtttaaagtttaaatatccttgcattcttgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6113054 369 +   6154872 ttaaacctcattcAAACACCATATACACTGTGGAATCCAAAATaatggcctcacacatatgtccaagccctaagacgcagaccatttagatatgttactttacacagcaaaagggactttgctgatatgattaagagcatggacctttagat-gtggagattatttcgtattatttgagtggccccaatctgattgcatgatttctttaacctggagatgactggagaaatatgggtcagac----ggagtgctgaatttcatctagaataatttcttaatctagtaaaataacatcatctctgttttttattctttaattaagtggcaaaatgcattaaaaggtttaaagtttaaatatccttgcattcttgg
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     756376 363 +    766320 TTAAATCTCATTTGACCACCATGTACACTGTGAAATCTAAAATaatggccccacaaatatctccaaaccctaagcctcatcatctttagatatgttaccttacaaaacaaaagagaatttgccaatatgattaacaggatggacctttattt-ggggagattatcttggattttctgggtgagcccaatctgat--catgaattcttaaaagtagagaTGACTGAAAAAATGTGGGTCAGAT----GGAGTATTGAATTTCTTTTACAGTAATTTCTTCATCTACTAAAATATGGTCATCTCTGTTTTTAATTCT----TTAAGTGGTGAAATGCATTAAAAGATTTACAGTTTATATATTATTGCATTCTTGG
i cerAty1.NW_012002711v1   I 105 T 94109
s colAng1.NW_012115566v1    2968733 364 -   3067355 TTAAATCTCATTTGACCACCATGTACACTGTGAAATCTAAAATaatggccccacaaatatctccaaaccctaagcctcatcatctttagatatgttaccttacaaaacaaaagagaatttgccaatatgattaacaggatggacctttatttgggggagattatcttggattttctgggtgagcccaatctgat--catgaattcttaaaagtagagaTGACTGAAGAAATGTGGGTCAGat----ggagtgttgaatttcttttacagtaattttttcatctactaaaatatggtcatctctgtttttaattct----ttaagtggtgaaatccattaaaagatttacagtttatatattattacattcttgg
i colAng1.NW_012115566v1   I 5597 C 0
s calJac3.chr4             30278711 363 + 171630274 TTAAACCTCATTTAGCCACCACATACACTGTAGAGCCcaaaataatagcctcacaaatatgatcaaaccctaagacccagatcatttagatatgttactttacacagcaaaagggactttactgatatgattaagagcatgaa-cttcagat-ggagagattattttggatgatgtgagtgg-cccagtctgatcgcatgatttctttaaagtgggGACGACTAAAGAAATATGGGTCAGat----ggagtgctaaatttcatctagaataattttttactctagtaaaataacttcatctctattttatattat----ttaagtggaaaaatgtattaaaaggtttcaaatttaaatatctttgcatttttgg
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1     166589 367 -    383796 TGAAACCTCATTTAGCCACCACATACACTGTGGAGCCcaaaataatggcctcacaaatatgaccaagccctaagacccaggtcgtttagatatattactttacacagcaaaagggactttgctgatgtgattaagagcatgga-cttcagat-ggagagattgttttggattatgtgagtgg-cccagtctgattgcatgatttctttaagGTGGGGATGACTGAAGAAATATGGGTCAGAT----GGAGTCCTAAATTTCATCTAGAATAATTTCTTACTCTAGTAAAATAACATCATCTCTATGCTTTATTATTTAATTAAGTGGTAAACTGTATTAAAAGGTTTAAAATTTAAATATCTTTGCATTCTTGG
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e manLeu1.NW_012101121v1      44679 2916 +    273075 I
e chlSab2.chr17            29237684 2776 -  71996105 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=133154.000000
s hg38.chr6_GL000254v2_alt  1108885 90 +   4827813 gctatataccttggtcaagacagtctgtttataacacattggttaatacagtctactaatatttttcttagaattttcacatctaattaa
s panTro5.chr6             30074503 87 + 175400573 GCTATATACCTTGGTCAAGACAGTCTGTTTATAACACATTGGTTAATACAGT---CTAATATTTTTCTTAGAATTTTCACATCTAATTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30305142 87 + 173848474 gctatataccttggtcaagacagtctgtttataacacattggttaatacagt---ctaatatttttcttagaattttcacatctaattaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6113423 87 +   6154872 gctatataccttggtcaagacagtctgtttataacacattggttaatacagt---ctaatatttttcttagaattttcacatctaattaa
i gorGor5.CYUI01015250v1   C 0 C 0
s colAng1.NW_012115566v1    2969097 90 -   3067355 gatacataacttggtcaatatagtctattcattgcatacaggtagatatagtctactaatatttttctcaggattttcacacataattac
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30279074 90 + 171630274 gatatataccttggccaagacggtctgtttataacacattggttgatattgtctagtaacatttttctttgaattttcacatctaattaa
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1     166956 90 -    383796 GATATATACCTTGGCCAAGACAGTCTGTTTATAACATGTTGGTTAATATTGCCTAGTAATATTTTTCTTAGAAATTTCACATCTAATTAA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e manLeu1.NW_012101121v1      44679 2916 +    273075 I
e chlSab2.chr17            29237684 2776 -  71996105 I
e cerAty1.NW_012002711v1     756739 94109 +    766320 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29864436 2283 - 170955103 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=37911.000000
s hg38.chr6_GL000254v2_alt  1108975 19 +   4827813 ttaaaagtgattttcctat
s panTro5.chr6             30074590 19 + 175400573 TTAAAAGTGATTTTCCTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30305229 19 + 173848474 ttaaaagtgattttcctat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6113510 19 +   6154872 ttaaaagtgattttcctat
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29866719 19 - 170955103 tcaaaaaacATGTTTCTAC
i macFas5.chr4             I 2283 I 2
s colAng1.NW_012115566v1    2969187 19 -   3067355 ataaaagtgattttcctat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30279164 19 + 171630274 ttaaaagtaatttttctat
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1     167046 19 -    383796 TTAAAAGTAATTTTCCTAT
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            26812 5164 +    515838 M
e otoGar3.GL873550         17106705 8542 -  18854210 I
e manLeu1.NW_012101121v1      44679 2916 +    273075 I
e chlSab2.chr17            29237684 2776 -  71996105 I
e cerAty1.NW_012002711v1     756739 94109 +    766320 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=9828.000000
s hg38.chr6_GL000254v2_alt  1108994 3 +   4827813 aat
s panTro5.chr6             30074609 3 + 175400573 AAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30305248 3 + 173848474 aat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6113529 3 +   6154872 aat
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29866740 3 - 170955103 AAT
i macFas5.chr4             I 2 C 0
s colAng1.NW_012115566v1    2969206 3 -   3067355 aat
i colAng1.NW_012115566v1   C 0 C 0
s calJac3.chr4             30279183 3 + 171630274 aat
i calJac3.chr4             C 0 I 1743
s saiBol1.JH378341            32186 3 +    515838 AAT
i saiBol1.JH378341         M 5164 C 0
s aotNan1.NW_018496904v1     167065 3 -    383796 AAT
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e manLeu1.NW_012101121v1      44679 2916 +    273075 I
e chlSab2.chr17            29237684 2776 -  71996105 I
e cerAty1.NW_012002711v1     756739 94109 +    766320 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=2548.000000
s hg38.chr6_GL000254v2_alt  1108997 1 +   4827813 A
s panTro5.chr6             30074612 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30305251 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6113532 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29866743 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s colAng1.NW_012115566v1    2969209 1 -   3067355 a
i colAng1.NW_012115566v1   C 0 I 2205
s saiBol1.JH378341            32189 1 +    515838 A
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     167068 1 -    383796 A
i aotNan1.NW_018496904v1   C 0 I 1539
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30279186 1743 + 171630274 I
e manLeu1.NW_012101121v1      44679 2916 +    273075 I
e chlSab2.chr17            29237684 2776 -  71996105 I
e cerAty1.NW_012002711v1     756739 94109 +    766320 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=3083.000000
s hg38.chr6_GL000254v2_alt  1108998 4 +   4827813 GGTa
s panTro5.chr6             30074613 4 + 175400573 GGTa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30305252 4 + 173848474 GGTa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6113533 4 +   6154872 GGTa
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29866744 4 - 170955103 GAca
i macFas5.chr4             C 0 C 0
s saiBol1.JH378341            32190 4 +    515838 GGCC
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     167069 1539 -    383796 I
e calJac3.chr4             30279186 1743 + 171630274 I
e colAng1.NW_012115566v1    2969210 2205 -   3067355 I
e manLeu1.NW_012101121v1      44679 2916 +    273075 I
e chlSab2.chr17            29237684 2776 -  71996105 I
e cerAty1.NW_012002711v1     756739 94109 +    766320 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1866.000000
s hg38.chr6_GL000254v2_alt  1109002 2 +   4827813 aa
s panTro5.chr6             30074617 2 + 175400573 aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30305256 2 + 173848474 aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6113537 2 +   6154872 aa
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29866748 2 - 170955103 ac
i macFas5.chr4             C 0 C 0
s saiBol1.JH378341            32194 1 +    515838 -A
i saiBol1.JH378341         C 0 I 1
s aotNan1.NW_018496904v1     168608 2 -    383796 aa
i aotNan1.NW_018496904v1   I 1539 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30279186 1743 + 171630274 I
e colAng1.NW_012115566v1    2969210 2205 -   3067355 I
e manLeu1.NW_012101121v1      44679 2916 +    273075 I
e chlSab2.chr17            29237684 2776 -  71996105 I
e cerAty1.NW_012002711v1     756739 94109 +    766320 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=9829.000000
s hg38.chr6_GL000254v2_alt  1109004 5 +   4827813 tagta
s panTro5.chr6             30074619 5 + 175400573 tagta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30305258 5 + 173848474 tagta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6113539 5 +   6154872 cagta
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29866750 5 - 170955103 tggtg
i macFas5.chr4             C 0 C 0
s calJac3.chr4             30280929 5 + 171630274 TAGTA
i calJac3.chr4             I 1743 C 0
s saiBol1.JH378341            32196 5 +    515838 CAgta
i saiBol1.JH378341         I 1 C 0
s aotNan1.NW_018496904v1     168610 5 -    383796 tagta
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e colAng1.NW_012115566v1    2969210 2205 -   3067355 I
e manLeu1.NW_012101121v1      44679 2916 +    273075 I
e chlSab2.chr17            29237684 2776 -  71996105 I
e cerAty1.NW_012002711v1     756739 94109 +    766320 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e rheMac8.chr4             30200697 1958 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=622257.000000
s hg38.chr6_GL000254v2_alt  1109009 230 +   4827813 gaagggggtaagtctcttattttacaaattattcaaataatacatgaaaagaaatggaagactgagactacaactc-tttgccatccgtaatgaatgaacagatctagccactgaacagcaatgacaattttcatcacca-aagggaaataaccagtattaaactcttccccttgttgaaaaacatgatatagtaccaccaaaactcacggggaaaaaaat--ctcaatagatg
s panTro5.chr6             30074624 230 + 175400573 gaagggggtaaatctcttattttacaaattattcaaataatacatgaaaagaaatggaagactgagactacaactc-tttgccatccgtaatgaataaacacatctagccactgaacagcaatgacaactttcatcacca-aagggaaataaccagtattaaactcttccccttgatgaaaaacatgatatagtaccaccaaaactcacgggaaaaaaaaa--atgaatagatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30305263 230 + 173848474 gaagggggtaaatctcttattttacaaattattcaaataatacatgaaacgaaatggaagactgagactacaactc-tttgccatccgtaatgaataaacacatctagccactgaacagcaatgacaattttcatcacca-aagggaaataaccagtattaaactcttccccttgatgaaaaacatgatatagtaccaccaaaactcacgggaaaaaaaaa--atgaatagatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6113544 228 +   6154872 gaa-ggggtaaatctcttattttacaaattattcaaataattcatgaaaagaaatggaagactgagactacaactc-tttgccatccgtaatgaatgaacacatctagccactgaacagcaatgacaattttcatcacca-aagggaaataaccagtattaaactcttccccttgatgaaaaacatgatatagtaccaccaaaactcatggggaaaaaaa---ctgaatagatg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30202655 225 + 172585720 gaagagggtaaatcttttattttagaaattattcagccagtatatgagaagaaatgaaagactaagtct--------tttgcaattcgtgatgaattaacagatttagccactgaacagcagtggcaattaaaatcacaa-aaaagaaatgactagtattgaattcttcctcgtgatgaaaaacatgatatagtaccatcaatcctcatggagaaaaaacacccagaacagacg
i rheMac8.chr4             I 1958 C 0
s macFas5.chr4             29866755 225 - 170955103 gaagagggtaaatcttttattttagaaattattcagccaatatatgagaagaaatgaaagactaagtct--------tttgcaatccgtgatgaattaacagatttagccactgaacagcagtggcaattaaaatcacaa-aaaagaaatgactagtattgaattcttccttgtgatgaaaaacatgatatagtaccatcaatcctcatggagaaaaaacacccagaacagacg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     662630 225 +    766320 gaagagggtaaatcttttattttagaaattattcagctagtatatgagaagaaatgaaagactaagact--------tttgcaattcgtgatgaattaacagatttagccactgaacagcagtggcaattaacatcacaa-aaaagaaatgactagtattgaattcttcctcttgatgaaaaacatgatgtagtaccatcaatcctcatggagaaaaaacaccctgaacagacg
i cerAty1.NW_012002711v1   T 94109 I 96632
s calJac3.chr4             30280934 221 + 171630274 GAAGAGAATAAATCTCTTATTTTAGAA---ATTAAAATAATACTTAAGAAGAAATAAAAAACCAAGACTACAACTTTTTTGATATATGTAATGAATTAAAAGATCTAGCCATTGAAAAATAATGG-AATTTACATCACAATAAAGGAAATAACCAGTATTAAA---CTTCTCTTGATGAAAAACATTATATAGTA-CATCAAAACTCATGGGAGATAAA----CTG-ATAGATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341            32201 222 +    515838 gaagaggataaatctcttattttagaa---attaaaataatacttaagaagaaatagaagactgagactacaacttttatgatatatgtaatgaattcaaagatatagccattgaaaaa-aatgg-aatttatatcacaataatgaaaataaccagtattaaa---ctcctcttgatgtaaaatattatatagtaccatcaaaactcatggggaataaa----ctgaatagatg
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     168615 230 -    383796 gaagaggataaatctcttattttagaaattattaaaataatactagagaagaaatagaagactgagactacaactcttttgatatttgtaatgaattaacagatctagccattgaaaaataatggcaatttacatcacaataaaggaaataaccagtattaaacttcttctcttgatgaaaaacattgtatactaccatcaaaactcatggggaaaaaa----ctgaatagatg
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e colAng1.NW_012115566v1    2969210 2205 -   3067355 I
e manLeu1.NW_012101121v1      44679 2916 +    273075 I
e chlSab2.chr17            29237684 2776 -  71996105 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1229998.000000
s hg38.chr6_GL000254v2_alt  1109239 232 +   4827813 caaacctctataccaaactacaaatttctagaaaatgcaggtaatagagatgcatattaaaccatagtttggggtgcaatccacaaaatacaaacaacaggaaactctaccagacaaTATTAATTTCAAAGGGATAACCTATAGAACAAATAAGAACAAAAAACTTATTTTTAAaggtaaaactaaactatcatttgggatgatgaaaatata----aaatagaacaaagaagtga
s panTro5.chr6             30074854 232 + 175400573 caaacctctataccaaactacacatttctagaaaatgcaggtaatagagatgcatattaaaccatagcttggggtgcaatccacaaaatacaaacaacaggaaactctaccagacaaTATTAATTTCAAAGGGATAACCTATAGAACAAATGAGAACAAAAAACTTATTTTTAAAGGTAAGACTAAACTATCATTTGGGATGATGAAAATATA----AAATAGAACAAAGAAGTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30305493 232 + 173848474 caaacctctataccaaactacacatttctagaaaatgcaggtaatagagatgcatattaaaccatagcttggggtgcaatccacaaaatacaaacaacaggaaactctaccagacaaTATTAATTTCAAAGGGATAACCTATAGAACAAATGAGAACAAAAAACTTATTTTTAAaggtaagactaaactatcatttgggatgatgaaaatata----aaatagaacaaagaagtga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6113772 232 +   6154872 caaacctctataccaaactacacatttctagaaaatgcaggtaatagagatgcatattaaaccatagcttggggtgcaatccacaaaatacaaacaacaggaaactctaccagacaaTATTAATTTCAAAGGGATAACCTATAGAACAAATGAGAACAAAAAACTTACTTTTAAAGGTAAAACAAAACTATCATTTGGgatgatgaaaatata----aaatagaacaaagaagtga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30202880 227 + 172585720 caaacctctgtatcaaactaccaatttctagaaaatacaggtcatagagataca--ttaaaccacaccttggggtgcaatctgcaaaatgcaaagaacaggaaaccctaccagacaaTATAAATTTCAAGGAGG-AACCTATAGAATAAATAAGGACA-AAAACATATTTTTAAaggtaaaactaaactataattttagatga-aaaaatata----aaatcgaacaaagaagtga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29866980 225 - 170955103 caaacctc--tatcaaactaccaatttctagaaaatacaggtcatagagataca--ttaaaccacaccttggggtgcaatctgcaaaatgcaaagaacaggaaaccctaccagacaaTATAAATTTCAAGGAGG-AACCTATAGAATAAATAAGGACA-AAAACATATTTTTAAAGGTAAAACTAAACTATAATTTTAGATGA-AAAAATATA----AAATTGAACAAAGAAGTGA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     759487 229 +    766320 caagcctgtataccaaactaccaatttatagaaaatacaggtaatagagataaatgtcaaaccacaccttggcatgcaa-ccacaaaattcaaacaataggaaaccttacCATACACCATAAATTTCAAGGAGG-AACCTATAGAACAAATGAGAACACAAAACATA-TTTTAAaggtaaaactaaactataattttggatgatgaaaatata----aaatagaacaaagtagcaa
i cerAty1.NW_012002711v1   I 96632 C 0
s chlSab2.chr17            29240460 228 -  71996105 caaacctgtataccaaactaccaatttatagaaaatacaggtaatagagataaatgtcaaatcacaccttggcatgcaa-ccacaaaattcaaacaataggaaaccttacCATACAATATAAATTTCAAGGAGG-AACCTATAGAACAAATGAGAACACAAAACAT--TTTTAAaggtaaaactaaactataattttggatgatgaaaatatg----aaatagaacaaaggaacga
i chlSab2.chr17            I 2776 C 0
s manLeu1.NW_012101121v1      47595 228 +    273075 caaacctgtataccaaactaccaatttatagaaaatacaggtaatagagataaatgtcaaatcacaccttggcatgcaa-ccacaaaattcaaacaataggaaaccttaccatacaaTATAAATTTCAAGGAGG-AACCTATAGAACAAATGAGAACACAAAACAT--TTTTAAaggtaaaactaaactataattttggatgatgaaaatata----aaatagaacaaaggagtga
i manLeu1.NW_012101121v1   I 2916 C 0
s colAng1.NW_012115566v1    2971415 229 -   3067355 caagcctgtataccaaactaccaatttatagaaaatacaggtaatagagataaatgtcaaaccacaccttggcacgcaa-ccacaaaattcaaacaataggaaaccttaccatacaaCATAAATTTCAAGGAGG-AATCTATAGAAAAAATGAGAACACAAAACATA-TTTTAAaggtaaaactaaatcataattttggatggtgaaaatata----aaatagaacaaaggagtga
i colAng1.NW_012115566v1   I 2205 C 0
s calJac3.chr4             30281155 229 + 171630274 caaacctctataccaacctacaaatactt-gaaaatacagataatagagatatatattaaaccatatctcggggtataatccacaaaatgcaaacaagaggaaactctaccagacaatatcaatttCAAAGGGAGAACCTATAGAACAAATGAGAACAAAAAACAT--TTTAAAAAGTAAAACTAAACTATAATTATGGATGATGAAAATATA----AAATAGAACAAAGAAGTAA
i calJac3.chr4             C 0 I 10711
s saiBol1.JH378341            32423 229 +    515838 caaacctctataccaacctacaaatactt-gaaaatacaggtaatagagatacatattaaaccatatcttggggtacaatccacaaaatgcaaacaacaggaaactctaccagacaaTATTAATTTCAAAGGGAGAACCTATAGAGCAAATGGGAACAAAAAACAT--tttaaaaagtaaaactaaactataattatggatgatgaaaatata----aaatagaacaaagaagtaa
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     168845 233 -    383796 caaacctctataccaacctacaaatgctt-gaaaatacaggtaatagagatacatattaagccatatctaggggtgcaatccacaaaatgcaaacaacagaaaactctaccagacaaTATTAATTTCAAAGGGAAAACCTGTAGAACAAATGAGAACAAAAAAAAA--TTTTAAAAGTAAAACTAAACTATAATTATGGATGATGAAAATATAAAACAAACAGAGCAAACAAGTGA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1265622.000000
s hg38.chr6_GL000254v2_alt  1109471 280 +   4827813 ggaccacaaaagtcaggatgtgattgatttttatttgaaaaaataaaa-atttactattgaactgggtcaattgatgggg-cttctaggtcagctgacaaact--tctctctctttc--tgatggttaaagagtgtttactgttgattaAAGGTCACCATTTTAAGATTTTTTTTCTTTTATGTCACCTGTG-----TTTTATGACAAAAAGGCGAACGCAGAATAAAATGA--GTTATGGGGCACGGTTCCTGTTCTGCACAAAGCCTCCTCCCCATCCTCCTCTCTGGACA
s panTro5.chr6             30075086 278 + 175400573 GGACCACAAAAGTCAGGATGTGATTGATTTTTATTTGAAAAAATAAAA-ATTTACTATTGAACTGGGTCAATTGATGGGG-CTTCTAGGTCAGCTGACAAACT----TCTCTCTTTC--TGATGGTTAAAGAGTGTTTACTCTTGATTAAAGGTCACCATTTTAAGATTTTTTTTCTTTTATGTCACCTGTG-----TTTTATGACAAAAAGGCGAACGCAGAATAAAATGA--GTTATGGGGCACGGTTCCTGTTCTGCACAAAGCCTCCTCCCCATCCTCCTCTCTGGACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30305725 278 + 173848474 ggaccacaaaagtcaggatgtgattGATTTTTATTTGAAAAAATAAAA-ATTTACTATTGAACTGGGTCAATTGATGGGG-CTTCTAGGTCAGCTGACAAACT----TCTCTCTTTC--TGATGGTTAAAGAGTGTTTACTCTTGATTAAAGGTCACCATTTTAAGATTTTTTTTCTTTTATGTCACCTGTG-----TTTTATGACAAAAAGGCGAACGCAGAATAAAATGA--GTTATGGGGCACGGTTCCTGTTCTGCACAAAGCCTCCTCCCCATCCTCCTCTCTGGACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6114004 281 +   6154872 ggaccacaaaagtcaggatgtgattgatttttatttgaaaaaataaaa-atttagtattgaactgggtcaattgatgggg-cttctaggtcagctgacaaacttctctctctctttc--tggtggttaaagagtgtttactcttgattaAAGGTCACCATTTTAAGATTTTTTTTCTTTTATGTCACCTGTG-----TTTTATGAC-AAAAGGCGAACGCAAAATAAAATGA--GTTATGGGGCACGGTTCCTGTTCTGCACAAAGCCTCCTCCCCATCCTCCTCTCTGGACA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30203107 283 + 172585720 tgaccatataggtgaggacgtg-----cttttatttgaaaaagggaagagtttatcattgagctgggccagttgatgggg-cttctaggtcagctgccaaacttctctctctctctc--tgatggttaaagggagtttacttttgattaaagggcaccatttttagatcttttatctttgatggtccctgtgttctattttacgacaaaaacactaataaagaaTAAAATAA--TGTGTGAGGTACGGTTCTTGTTCTGCACCAAGCCTCCTTCCCACCCTCCACTCTGGACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29867205 283 - 170955103 TGACCATATAGGTGAGGACGTG-----CTTTTATTTGAAAAAGGGAAGAGTTTATCATTGAGCTGGGCCAGTTGATGGGG-CTTCTAGGTCAGCTGCCAAACTTCTCTCTCTCTCTC--TGATGGTTAAAGGGAGTTTACTTTTGATTAAAGGGCACCATTTTTAGATCTTTTATCTTTGATGGTCCCTGTGTTCTATTTTACGACAAAAACACTAATAAAGAATAAAATAA--TGTGTGAGGTACGGTTCTTGTTCTGCACCAAGCCTCCTTCCCACCCTCCACTCTGGACA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     759716 282 +    766320 tgaccataaaagtcaggatgtgattgatttttatttg-aaacggggagagtttattattgagctggggcaattgatgggg-cttc-aggtcagctgccaaact----tctacctctc--tgatggttaaagggtgtttaccttTGATGAAAGGTCACCATTTTAAGATCTGTTTTCTTTTGTGTTACGTGTGTTTTATTTTATGATAAAAAGGCCAATGCAGAGTAAAATAA--GTTATGGGGCATGGTTCCTGTTCTGCACAAAGCCTCCACCCCATCCTCCTCCCTGGACA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29240688 284 -  71996105 tgaccataaaagtcaggatgtgattgatttttatttgaaaaggggaagagtttattgttgagctggggcaattgaccggg-cttcgaggtcagctgccaaact----tctccctctc--tgatggttaaagggtgtttacctttgattaAAGGTCACCATTTTAAGATATTTTTTCTTTTATGTTACCTGTGTTTTATTTTATGATAAAAAGGCTAATGCAGAGTAAAATAA--GTTATGGGGTATGGTTCCTGTTCTGCACAAAGCCTCCACCCCATCCTCCTCCCTGGACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      47823 283 +    273075 tgaccataaaagtcaggatgtgattgatttttatttgaaaaggggaag-gtttattgttgagctggggcaattgatgggg-cttctaggtcagctgccaaact----tctccctctc--tgatggttaaagggtgtttacctttgattaAAGGTCACCATTTTAAGATCTTTTTTCTTTTATGTTACCTGTGTTTTATTTTATGATAAAAAGGCCAATGCAGAGTAAAATAA--GTTATGGGGCATGGTTCCTGTTCCGCACAAAGCCTCCACCCCATCCTCCTCCCTGGACA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2971644 284 -   3067355 tgaccataaaagtcaggatgtgattgatttttatttgaaaagggaaagagtttattattgagctggggcaattgatgggg-cttctaggtcagctgccaaact----tctccctctc--tgatggttaaagggtgtttacctttgattaAAGGTCACCATTTTAAGATCTTTTTTCTTTTATGTTACCTGTGTTTTATTTTATGATAAAAAGGCCAATGCAGAGTAAAATAA--GTTATGGGGCATGGTTCCTGTTCTGCACAAAGCCTCCACCCCATCCTCCTCTCTGGACA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            32652 269 +    515838 tgaccataaaagtcagaatgtgattga--------tttaatagggaagaatttattattgagctgggacaattgaggggg-tttctaggtcagttgacaaact----tctctctctC--------TTAAAGGATGTTTACCTTTGATTAAAGGTCACCATTTTAACATCTTTTTTCTTTTATGTTACCTGTGTTTGACTTTATGACAAGAAGGCTAATGAAGAAAAAAATAA--ATTATAGGACATGGTTACTGTTCTGCACAAAGCCTCCTT-CCATCCCACTCTCTGGACA
i saiBol1.JH378341         C 0 I 6580
s aotNan1.NW_018496904v1     169078 287 -    383796 TCACCATAAAAGTCAAAATGTGATTCATTTTTATTTTTAAAAGGGAAGAA-TTATTATTGAGCTGGGACAATTGATGAGGCTTTCTAGGTCAGTTGACATACT----TCTCTCTCTCTCTGATGGTTAAAGGGTGTTTACCTTTGATTAAAGGTCCCCATTTTAAGATCTTTTTTTTTTTCTGTTACCTGTGTTTGATTTTATGACAAGAAGGCTAATGAAGAAAAAAAAAAAGATTATGAGGCATGGTTCCTGTTCTGAACAAAGCCTCCTT-CCATCCCACTCTCTGGACA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=156847.000000
s hg38.chr6_GL000254v2_alt  1109751 33 +   4827813 CTGAGCACCCAGAACAACCGGCAGCCCCAGGAC
s panTro5.chr6             30075364 33 + 175400573 CTGAGCACCCAGAACAACCGGCAGCCCCAGGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30306003 33 + 173848474 CTGAGCACCCAGAACAACCGGCAGCCCCAGGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6114285 33 +   6154872 CTGAGCACCCAGAACAACCGGCAGCCCCAGGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30203390 33 + 172585720 CTGAGCACCCAGAACTACCGGCAACCCCAGGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29867488 33 - 170955103 CTGAGCACCCAGAACTACCGGCAACCCCAGGAT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     759998 33 +    766320 CTGAGCACCCAGAACAACTGGCAGCCCCAGGAC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29240972 33 -  71996105 CTGAGTACCCAGAACAACTGGCAGCCCCAGGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      48106 33 +    273075 CTGAGCACCCAGAACAACTGGCAGCCCCAGGAC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2971928 33 -   3067355 CTGAGCAACCAGAACAACTGGCAGCCCCAGGAC
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018496904v1     169365 33 -    383796 CTGAGCACACAGAACAACCAGCAGCCCCAGGAC
i aotNan1.NW_018496904v1   C 0 T 59982
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            32921 6580 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=34916.000000
s hg38.chr6_GL000254v2_alt  1109784 9 +   4827813 CCCTGGCAG
s panTro5.chr6             30075397 9 + 175400573 CCCTGGCAG
i panTro5.chr6             C 0 N 0
s panPan2.chr6             30306036 9 + 173848474 CCCTGGCAG
i panPan2.chr6             C 0 N 0
s gorGor5.CYUI01015250v1    6114318 9 +   6154872 CCCTGGCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30203423 9 + 172585720 ACTTGGCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29867521 9 - 170955103 ACTTGGCAG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     760031 9 +    766320 CCCTGCCAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29241005 9 -  71996105 CCCTGCCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      48139 9 +    273075 CCCTGCCAG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2971961 9 -   3067355 TCCTGCCAG
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018496904v1     109416 9 -    383796 CCCTGGCAG
i aotNan1.NW_018496904v1   T 59982 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            32921 6580 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=11402.000000
s hg38.chr6_GL000254v2_alt  1109793 4 +   4827813 GGCT
s gorGor5.CYUI01015250v1    6114327 4 +   6154872 GGCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30203432 4 + 172585720 GGCT
i rheMac8.chr4             C 0 I 28
s macFas5.chr4             29867530 4 - 170955103 GGCT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     760040 4 +    766320 GACT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29241014 4 -  71996105 GACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      48148 4 +    273075 GACT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2971970 4 -   3067355 GACT
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018496904v1     109425 4 -    383796 GGCT
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            32921 6580 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=44821.000000
s hg38.chr6_GL000254v2_alt  1109797 22 +   4827813 GTCTCATTACTGAGTGTGCATC
s gorGor5.CYUI01015250v1    6114331 22 +   6154872 GTCTCATTACTGAGTGTGCATC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29867534 22 - 170955103 ACCTTATATCTGGGTGTGTGTC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     760044 22 +    766320 ACCTCATTTCTGAGTGTGCACC
i cerAty1.NW_012002711v1   C 0 T 89015
s chlSab2.chr17            29241018 22 -  71996105 ACCTCATTTCTGAGTGTGCACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      48152 22 +    273075 ACCTCATTTCTGAGTGTGCACC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2971974 22 -   3067355 ACCTCATTTCTGAGTGTGCACC
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018496904v1     109429 22 -    383796 CCCTCATTTCTGAGTGTGCATC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            32921 6580 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e rheMac8.chr4             30203436 28 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=8730.000000
s hg38.chr6_GL000254v2_alt  1109819 6 +   4827813 CAGCTC
s gorGor5.CYUI01015250v1    6114353 6 +   6154872 CAGCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29867556 6 - 170955103 CAGCTC
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29241040 6 -  71996105 CAGCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      48174 6 +    273075 CAGCTC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2971996 6 -   3067355 CAGCTC
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            32921 6580 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     109451 0 -    383796 C
e calJac3.chr4             30281384 10711 + 171630274 I
e cerAty1.NW_012002711v1     760066 89015 +    766320 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e rheMac8.chr4             30203436 28 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1000.000000
s hg38.chr6_GL000254v2_alt  1109825 1 +   4827813 C
s gorGor5.CYUI01015250v1    6114359 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            29241046 1 -  71996105 C
i chlSab2.chr17            C 0 N 0
s manLeu1.NW_012101121v1      48180 1 +    273075 C
i manLeu1.NW_012101121v1   C 0 T 122
s colAng1.NW_012115566v1    2972002 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            32921 6580 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     109451 0 -    383796 C
e calJac3.chr4             30281384 10711 + 171630274 I
e cerAty1.NW_012002711v1     760066 89015 +    766320 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29867562 0 - 170955103 C
e rheMac8.chr4             30203436 28 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=546.000000
s hg38.chr6_GL000254v2_alt  1109826 1 +   4827813 A
s gorGor5.CYUI01015250v1    6114360 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     671051 1 +    766320 A
i cerAty1.NW_012002711v1   T 89015 C 0
s colAng1.NW_012115566v1    2972003 1 -   3067355 A
i colAng1.NW_012115566v1   C 0 T 123
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            32921 6580 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     109451 0 -    383796 C
e calJac3.chr4             30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1      48181 122 +    273075 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29867562 0 - 170955103 C
e rheMac8.chr4             30203436 28 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=300.000000
s hg38.chr6_GL000254v2_alt  1109827 1 +   4827813 C
s gorGor5.CYUI01015250v1    6114361 1 +   6154872 C
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     671052 1 +    766320 C
i cerAty1.NW_012002711v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            32921 6580 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     109451 0 -    383796 C
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2972004 123 -   3067355 T
e manLeu1.NW_012101121v1      48181 122 +    273075 T
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29867562 0 - 170955103 C
e rheMac8.chr4             30203436 28 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=2100.000000
s hg38.chr6_GL000254v2_alt  1109828 1 +   4827813 G
s panPan2.chr6             30196680 1 + 173848474 G
i panPan2.chr6             N 0 C 0
s gorGor5.CYUI01015250v1    6114362 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     671053 1 +    766320 G
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29118930 1 -  71996105 G
i chlSab2.chr17            N 0 C 0
s manLeu1.NW_012101121v1      48059 1 +    273075 G
i manLeu1.NW_012101121v1   T 122 C 0
s colAng1.NW_012115566v1    2971881 1 -   3067355 G
i colAng1.NW_012115566v1   T 123 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            32921 6580 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     109451 0 -    383796 C
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29867562 0 - 170955103 C
e rheMac8.chr4             30203436 28 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=190886.000000
s hg38.chr6_GL000254v2_alt  1109829 88 +   4827813 GTTCCTGTTCTGCACAAAGCCTCCTCCCCATCCTCCTCTCTGGACACTGAGCACCCAGAACAACCGGCAGCCCCAGGACCCCTGGCAA
s panTro5.chr6             29962995 88 + 175400573 GTTCTTGTTCTGCACCAAGCCTCCTTCCCACCCTCCGCTCCAGACACTGAGCACCCAGAACTACTGGCAACCCCAGGATACTTGGCAG
i panTro5.chr6             N 0 N 0
s panPan2.chr6             30196681 88 + 173848474 GTTCTTGTTCTGCACCAAGCCTCCTTCCCACCCTCCGCTCCAGACACTGAGCACCCAGAACTACTGGCAACCCCAGGATACTTGGCAG
i panPan2.chr6             C 0 N 0
s gorGor5.CYUI01015250v1    6114363 88 +   6154872 GTTCCTGTTCTGCACAAAGCCTCCTCCCCATCCTCCTCTCTGGACACTGAGCACCGAGAAGAACCGGCAGTCCCAGGACCCCTGGCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     671054 88 +    766320 GTTCTTGTTCTGCACCAAGCCTCCTTCCCACCCTCCACTCTGGACACTGAGCACCCAGAACTACCGGCAACCCCAGGATACTTGGCAG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29118931 88 -  71996105 GTTCTTGTTCTGCACCAAGCCTCCTTCCCACCCTCCACTCTGGACACTGAGCGCCCAGAACTACCGGCAACCCCAGGATACTTGGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      48060 88 +    273075 GTTCCTGTTCCGCACAAAGCCTCCACCCCATCCTCCTCCCTGGACACTGAGCACCCAGAACAACTGGCAGCCCCAGGACCCCTGCCAG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2971882 88 -   3067355 GTTCCTGTTCTGCACAAAGCCTCCACCCCATCCTCCTCTCTGGACACTGAGCAACCAGAACAACTGGCAGCCCCAGGACTCCTGCCAG
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            32921 6580 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     109451  0 -    383796 C
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29867562  0 - 170955103 C
e rheMac8.chr4             30203436 28 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=45028.000000
s hg38.chr6_GL000254v2_alt  1109917 24 +   4827813 GGCTGTCTCATTACTGAGTGTGCA
s panTro5.chr6             30075406 24 + 175400573 GGCTGTCTCATTACTGAGTGTGCA
i panTro5.chr6             N 0 C 0
s panPan2.chr6             30306045 24 + 173848474 GGCTGTCTCATTACTGAGTGTGCA
i panPan2.chr6             N 0 C 0
s gorGor5.CYUI01015250v1    6114451 24 +   6154872 GGCTGTCTCATTACTGAGTGTGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     671142 24 +    766320 GGCTACCTTACATCTGGGTGTGTG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29119019 24 -  71996105 GGCTACCTTACATCTGGGTGTGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      48148 24 +    273075 GACTACCTCATTTCTGAGTGTGCA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2971970 24 -   3067355 GACTACCTCATTTCTGAGTGTGCA
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            32921 6580 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     109451  0 -    383796 C
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29867562  0 - 170955103 C
e rheMac8.chr4             30203436 28 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=2467.000000
s hg38.chr6_GL000254v2_alt  1109941 2 +   4827813 TT
s panTro5.chr6             30075430 2 + 175400573 TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30306069 2 + 173848474 TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6114475 2 +   6154872 TT
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     671166 2 +    766320 TC
i cerAty1.NW_012002711v1   C 0 I 88898
s chlSab2.chr17            29119043 2 -  71996105 TC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      48172 2 +    273075 CC
i manLeu1.NW_012101121v1   C 0 I 31
s colAng1.NW_012115566v1    2971994 2 -   3067355 CC
i colAng1.NW_012115566v1   C 0 I 8
s saiBol1.JH378341            39501 2 +    515838 tt
i saiBol1.JH378341         I 6580 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     109451 0 -    383796 C
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29867562 0 - 170955103 C
e rheMac8.chr4             30203436 28 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=11473.000000
s hg38.chr6_GL000254v2_alt  1109943 7 +   4827813 CAGCTCC
s panTro5.chr6             30075432 7 + 175400573 CAGCTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30306071 7 + 173848474 CAGCTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6114477 7 +   6154872 CAGCTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002711v1     760066 7 +    766320 CAGCTCC
i cerAty1.NW_012002711v1   I 88898 C 0
s chlSab2.chr17            29119045 6 -  71996105 CAGCTC-
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341            39503 7 +    515838 caACACC
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     109451 7 -    383796 CAGATCC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2971996 8 -   3067355 I
e manLeu1.NW_012101121v1      48174 31 +    273075 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29867562 0 - 170955103 C
e rheMac8.chr4             30203436 28 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=5432.000000
s hg38.chr6_GL000254v2_alt  1109950 3 +   4827813 ACG
s panTro5.chr6             30075439 3 + 175400573 ACG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30306078 3 + 173848474 ACG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6114484 3 +   6154872 ACG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30203464 3 + 172585720 ACG
i rheMac8.chr4             I 28 C 0
s macFas5.chr4             29867562 3 - 170955103 ACG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     760073 3 +    766320 CCA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29119051 3 -  71996105 ACG
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341            39510 2 +    515838 AC-
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     109458 3 -    383796 ACG
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2971996 8 -   3067355 I
e manLeu1.NW_012101121v1      48174 31 +    273075 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=38120.000000
s hg38.chr6_GL000254v2_alt  1109953 10 +   4827813 TCGCTGGAGA
s panTro5.chr6             30075442 10 + 175400573 TCGCTGGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30306081 10 + 173848474 TCGCTGGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6114487 10 +   6154872 TCGCTGGAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30203467 10 + 172585720 TTGCCGGAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29867565 10 - 170955103 TTGCCGGAGG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     760076 10 +    766320 TCACTGGAGG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29119054 10 -  71996105 TTGCCGGAGG
i chlSab2.chr17            C 0 N 0
s colAng1.NW_012115566v1    2972004 10 -   3067355 TCACTGGAGG
i colAng1.NW_012115566v1   I 8 C 0
s saiBol1.JH378341            39512  9 +    515838 -CACTGGAGG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     109461 10 -    383796 TCGCTGGGGG
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1      48174 31 +    273075 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=53287.000000
s hg38.chr6_GL000254v2_alt  1109963 14 +   4827813 CAATGTCCACAGTT
s panTro5.chr6             30075452 14 + 175400573 CAATGTCCACAGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30306091 14 + 173848474 CAATGTCCACAGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6114497 14 +   6154872 CAATGTCCACAGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30203477 14 + 172585720 CGAGGTCCAGGGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29867575 14 - 170955103 CGAGGTCCAGGGTC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     760086 14 +    766320 CAATGTCCATGATC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29241071 14 -  71996105 CAATGTCCATGATC
i chlSab2.chr17            N 0 C 0
s manLeu1.NW_012101121v1      48205 14 +    273075 CAATGTCCATGATC
i manLeu1.NW_012101121v1   I 31 C 0
s colAng1.NW_012115566v1    2972014 14 -   3067355 CAATGTCCATGATC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            39521 14 +    515838 CAGTGGGCGTGGTC
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     109471 14 -    383796 CAACGTCCACGGTC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=2475867.000000
s hg38.chr6_GL000254v2_alt  1109977 417 +   4827813 TATTTCTTGAGTCCTGGATGAACCTGACAGGACATAGCTGAGGGGAAGCCTGGCC-CAGTCTGCAGGCTTTGGCCATCAGTGTAGAGGGAGGAGGTCCTCATCTCTCCACTGGAGCAGTTACAACCAGAGCCTCCTCTCTGCGTGGGA-GTGAGGCTCGGTCCTTCCCCTGAACACGGTGACAGGGATCTCTCCACAGGTAGAGATGACACCATTCCTCCTGTAACATGGTCCAATCTCACGCTTGTTCTGCTTTACAAGAAAGTTGACCC--ACGCTGGTGTCCCCTGAAGAAATCACAGGCACAGAGGAGGGACAGGTGGATTTCAGGGCTGTGCTTGATCTGGGAAAGGAAGAGTGCAGACCGCCAGGTGGCGCCGCTGCACTGCTTCTGCGCCCAGGAGGTGCCTGCTGGGGCTGA-G
s panTro5.chr6             30075466 417 + 175400573 TATTCCTTGAGTCCTGGATGAACCTGACAGGACATAGCTGAGGGGAAGCCTGGCC-CAGTCTGCAGGCTTTGGCCATCAGTGTAGAGGGAGGAGGTCCTCACCTCTCCACTGGCGCAGTTACAGCCAGAGCCTCCTCTCTGCGTGGGA-GTGAGGCTTGGTCCTTCCCCTGAACACGGTGACAGGGATCTCTCCACAGGTAGAGATGACACCATTCCTCCTGTAACATGGTCCAATCTCACGCTTGTTCTGCTTTACAAGAAAGTTGACCC--ACGCTGGTGTCCCCTGAAGAAATCACAGGCACAGAGGAGGGACAGGTGGATTTCAGGGCTGTGCTTGATCTGGGAAAGGAAGAGTGCAGACCGCCAGGTGGCGCCACTGCACTGCTTCTGCGCCCAGGAGGTGGCTGCTGGGGCTGA-G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30306105 417 + 173848474 TATTCCTTGAGTCCTGGATGAACCTGACAGGACATAGCTGAGGGGAAGCCTGGCC-CAGTCTGCAGGCTTTGGCCATCAGTGTAGAGGGAGGAGGTCCTCACCTCTCCACTGGCGCAGTTACAGCCAGAGCCTCCTCTCTGCGTGGGA-GTGAGGCTTGGTCCTTCCCCTGAACACGGTGACAGGGATCTCTCCACAGGTAGAGATGACACCATTCCTCCTGTAACATGGTCCAATCTCACGCTTGTTCTGCTTTACAAGAAAGTTGACCC--ACGCTGGTGTCCCCTGAAGAAATCACAGGCACAGAGGAGGGACAGGTGGATTTCAGGGCTGTGCTTGATCTGGGAAAGGAAGAGTGCAGACCGCCAGGTGGCGCCACTGCACTGCTTCTGCGCCCAGGAGGTGGCTGCTGGGGCTGA-G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6114511 416 +   6154872 TATTCCTTGAGTCCTGGATGAACCTGACAGGACATAGCTGA-GGGAAGCCTGGCC-CAGTCTGCAGGCTTTGGCCATCAGTGTAGAGGGAGGAGATCCTCACCTCTCCACTGGCGCAGTTACAGCCAGAGCCTCGTCTCTGCGTGGGA-GTGAGGCTTGGTCCTTCCCCTGAACACGGTGACAGGGATCTCTCCACAGGTAGAGATGACACCATTCCTCCTGTAACATGGTCCAATCTCATGCTTGTTCTGCTTTACAAGAAAGTTGACCC--ACGCTGGTGTCCCCTGAAGAAATCACAGGCACAGAGGAGGGACAGGTGGATTTCAGGGCTGTGCTTGATCTGGGAAAGGAAGAGTGCAGACCGCCAGGTGGCGCCGCTGCACTGCTTCTGCGCCCAGGAGGTGGCTGCTGGGGCTGA-G
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30203491 421 + 172585720 TATTCTTTGAGGCCTGGATGAACCTGACAGGACACAGCTGAGGGAAAGCCTGGCCTCACTCTGCAGGCTCTGGCCATCAGTGTAGAGGGGGCAGGTCCCCACTTCTCCACAGGTGCGGTTACAGCCAGAGCCTCCTCTTTGCATGGGA-GTGAAGCTTGGTCCTTCTCCCGAACACGGAGACAGGAATCTCTCCAGAAGTGGAGATGACACCATTCCTCCTCTAACATGGTCCAATCTCGTGCTTGTTCTGCTTTACAGGAAACTTGACTCAAACGCTGGTGTCCAGTGAAGAAATCCCGGGCACAGAGGAGGGACAGGTGGATTTCAGGGCTGTGCTTGATCTGGGAAAGGAAGAGCACAGACCACCAGGTGGCGCCGCTGCACTGCTTCTGCGCACAGGAGGTGGATGCTGGGGCTGCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29867589 419 - 170955103 TATTCTTTGAGGCCTGGATGAACCTGACAGGACACAGCTGAGGGAAAGCCTGGCCTCACTCTGCAGGCTCTGGCCATCAGTGTAGACGGGGCAGGTCCCCACTTCTCCACAGGTGCGGTTACAGCCAGAGCCTCCTCTTTGCATGGGA-GTGAGGCTTGGTCCTTCTCCCGAACACGGAGACAGGAATCTCTCCAGAAGTGGAGATGACACCATTCCTCCTCTAACATGGTCCAATCTCGTGCTTGTTCTGCTTTACAGGAAAGTTGACTC--ACGCTGGTGTCCAGTGAAGAAATCCCGGGCACAGAGGAGGGACAGATGGATTTCAGGGCTGTGCTTGATCTGGGAAAGGAAGAGCACAGACCACCAGGTGGCGCCGCTGCACTGCTTCTGCGCACAGGAGGTGGATGCTGGGGCTGCTG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     760100 411 +    766320 TATTCCTTGAGGCCTGGATGAACCTGATAGGACACAGCTGAGGGGAAGTCTGGCCCCAGTCTGTAGGCTTTGGCCATCAGCATGGAGGGAACAGGTCCTCACCTCTTCACAGGCGCAGTTACAGCCAGAGCCTCCTCTCTGCGTGGGA-GTGAGGCTCGGTCCTTCCCCTGAACAGGGTGACAGGGATCTCTCCAGAGGTGGAGATGACACCATTCCTCCTCTAACATGGTCCCATCTCATGTTCTTTCTGCTTT-----AAAGTTGACTC--ATGCTGGTGTCCAGTGAAGAAA-CCCTGGCACAGAGGAGAGACAGGTGGATTTCAGGGCTGTGCTTG-TCTGGGAATAGAAGAGCACAGACCACCAGGTGGCGCCGCTGCACTGCTTCTGCGCCCAGGAGGTGGATGCTGGGGCTGA-G
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29241085 417 -  71996105 TATTCCTTGAGGCCTGGATGAACCTTATAGGACACAGCTGAGGGGAAGTCTGGCCCCAGTCTGTAGGCTTTGGCCATCAGCATAGAGGGAACAGGTCCTCACCTCTCCACAGGCGCAGCTACAGCCAGAGTCTCCTCTCTGCGTGGGA-CTGAGGCTCGGTCCTTCCCCTGAACAGGGTGACAGGGATCTCTCCAGAGGTGGAGATGACACCATTCCTCCTCTAACATGGCCTCATCTCATGCTCGTTCTGCTTTACAGGAAAGCTGACTC--ACGCTGGTGTCCAGTGAAGAAA-CCCTGGCACAGAGGAGGGACAGGTGGATTTCAGGGCTGTGCTTGATCTGGGAAAGGAAGAGCACAGACCACCAGGTGGCGTCACTGCACTGCCTCTTCGCCCAGGAGGTGGATGCTGGGGCTGA-G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      48219 417 +    273075 TATTCCTTGAGGCCTGGATGAACCTGATAGGACACAGCTGAGGGGAAGTCTGGCCCCAGTCTGTAGGCTTTGGCCGTCAGCATAGAGGGAACAGGTCCTCACCTCTCCACAGGCGCAGCTACAGCCAGAGTCTCCTCTCTGCGTGGGA-GTGAGGCTCGGTCCTTCCCCTGAACAGGGTGACAGGGATCTCTCCAGAGGTGGAGATGACACCATTCCTCCTCTAACATGGCCCCATCTCATGCTCGTTCTGCTTTACAGGAAAGCTGACTC--ACGCTGGTGTCCAGTGAAGAAA-CCCTGGCACAGAGGAGGGACAGGTGGATTTCAGGGCTGTGCTTGATCTGGGATTGGAAGAGCACAGACCACCAGGTGGCGCCACTGCACTGCCTCTTCGCCCAGGAGGTGGCTGCTGGGGCTGA-G
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2972028 417 -   3067355 TATTCCTTGAGGCCTGGATGAACCTGATAGGACGCAGCTGAGGGGAAGTCTGGCCCCAGTCTGTAGGCTTTGGCTGTCAGCATAGAGGGAACAGGTCCTCACCTCTCCACAGACGCAGTTACAGCCAGAGTCTCCTCTCTGCGTGGGA-GTGAGACTTGGTCCTTCCCCTGAACAGGGTGACGGGGATCTCTCCAGAGGTGGAGATGACACCATTCCTCCTCTAACATGGTCCCATTTCATGCTCGTTCTGCTTTACAGGAAAGTTGACTC--ACGCTGGTGTCCAGTGAAGAAA-CCCTGGCACAGAGAAGGGACAGGTGGATTTCAGGGCTGTGCTTGATCTGGGAAAGGAAGAGCATAGACCACCAGGTGGCGCCGCTGCACTGCTTCTGCGCCCAGGAGGTGGATGCTGGGGCTGA-G
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            39535 417 +    515838 TATTTCTTCAGGCCTGGATGAACCTGATAGGACACAGCTGAGGGGAAGCCATCACCCAATCTGCAGGTTTTGGCCATCAGTGTAGAAGACATAGGTCCTCAGCTCTCCACAGGTACCATCATGGCCAGAGCCTCTTCTCTGCATGGGTAGTGAGGCTTGGCCCTTCCCCTGAACACAGTGACAGGGATCTCTCCAGAGGTGGAGATGATACGATTCCTCCCCTAAAATGGTTTAACCTCGTGCTTTTTCTGCTTTACAGGAAAGCTGACT---GGGCTGGTGTCCAGTGAAGAAATCCCAGGCACACAGGAGGGACAGGTGGATTTCAGGGCTG-GCTTGATCTGGGAAAGGAAGAGCACCGATCACCAGGTGGTGCCATTGTGCTGCTCCTGCACCCAGGAGGTGGCTGCTGGGGCTGA-G
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     599908 419 -   1771730 TATTACTTGAGGCCTGGGTGAACCTGATAGGACACAGCTGAGGGGAAGCCTTCACCCAATCTACAGACTTTGGCCATCAGTGTAGAAGACACAGGTCCTCAGCTCTCCACAAGTGCCACCATGGCCAGAGCCTCCTCTCTGCACAGGTAGTGAGGCTTGGCCCTTCCCCTGAACACAGTGACAGGGATCTCTCCAGAGGTGGAGATGATACTATTCCTCCCCTAAAATGGTTTAACCTCGTGCTTTTTCCGCTTTACAGGAAAGCTGACTC--TGGCTGGTGTCCAGTGAAGAAATCCCAGGCACACAGGAGGGACAGGTGGATTTCAGGGCTGTGCTTGATTTGGAAAAGGAAGACCACCGATCACCAGGTGGCGCCACTGTGCTGCTCCTGCACCCAGGAGATGGATGCTGGGGCTGA-G
i cebCap1.NW_016107755v1   N 0 I 800
s aotNan1.NW_018496904v1     109485 405 -    383796 TATTCCTTGAGGCCTCGATGAACCTAACAGGACACAACTGCGGGGAAGCCTGGCCCCAGTCTGCAGATTTTAGTTATTAGCATAGAGGAAGCAGGTCCTCACCTCTCCACA------------GCCAGAGCCTCCTCTCTGCATGGGC-GTGAAGATTGATCCTTCCCCTGAACACGGCGACAGGGATCTCTCCAGAGGCGGAGATGACACCATTCCTCTTCTAACATGGTCCAATCTCATTCTTGTTCTGCTTTAAAGGAAAGTTGACCC--ACGCTCGTGTCCAGTGAAGAAA-CCCTGGCACACAGGAGGGACAGGTGGATTTCAGGGCTGTGCTGGATCTGGGAAAGGAAGAGCAGAGACCACCAGATGGCGCCACTGCACTGCTTCTGCTCCCAGGAGATGGCCACTGGGGCTGC-G
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=395414.000000
s hg38.chr6_GL000254v2_alt  1110394 89 +   4827813 ATTGAAGGTGGGGAGAAGGATGTCACAGCTCATCGCACAGGTTCCCGGTAAAAATCCTCCTGCCCAGCCTAGCGGGCTCTCCCTTAATC
s panTro5.chr6             30075883 81 + 175400573 ATTGAAGGTGGGGAGAAGGATGGCACAGCTCATCGCACAGGTTCCCGGTAAAAATCCTCCTGCCCAGCCTAGCGGGCTCTC--------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30306522 81 + 173848474 ATTGAAGGTGGGGAGAAGGATGGCACAGCTCATCGCACAGGTTCCCGGTAAAAATCCTCCTGCCCAGCCTAGCGGGCTCTC--------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6114927 88 +   6154872 ATTGAAGGT-GGGAGAAGGATGTCACAGCTCATCACACAGGTTCCCGGTAAAAATCCTCCTGCCCAGCCTAGCGGGCTCTCCCTTAATC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30203912 88 + 172585720 CTTGAAGGTGGGGAAAGGGATGTCACAGCTCATCGCACTGGTT-CAGGTAAAAATCCTCCTGCCCAGCCCAGCGGCCTCTCCCTTAAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29868008 88 - 170955103 CTTGAAGGTGGGGAAAGGGATGTCACAGCTCGTCGCACTGGTT-CAGGTAAAAATCCTCCTGCCCAGCCCAGCGGCCTCTCCCTTAAGC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     760511 89 +    766320 ATTGAAGGTGGGGAGAGGGATGTCACAGCTCATCACACAGGTTCCAGGTAAAAATCCTCCTGCCCAGCCCATCTGGCTCTCCCTTAACC
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29241502 89 -  71996105 ACTGAAGGTGGGGAGAGGGATGTCACAGCTCATGGCACAGGTTCCAGGTAAAAATCCTCCTGCCCAGCCCATCTGGCTCTCCCTTAACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      48636 89 +    273075 ACTGAAGGTGGGGAGAGGGATGTCACAGCTCATCGCACAGGTTCCAGGTAAAAATCCTCCTGCCCAGCCCATCTGGCTCTCCCTTAACC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2972445 89 -   3067355 ATTGAAGGTGGGGAGAGGGATGTCTCAGCTCATCGCACAAGTTCCAGGTAAAAATCCTCCTGCTCAGCCCATCTGGCTCTCCCTTAACC
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            39952 88 +    515838 CTGCAGGGTGGGGAGAA-GATGTCATTACTCATTTTGCAGGTTCCAAGTAAAAACTCTCCTGCCCAGCCCATCTGGTTCTTCCTGAATC
i saiBol1.JH378341         C 0 I 309
s aotNan1.NW_018496904v1     109890 86 -    383796 CTTGAAGGTGGGGAG---GATGTCATAGCTCAAGGCACAGCTTCCAGGGAAAAATCCTCCTGCCCAGCCCATCTGGCCCTCCCTTAATC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e cebCap1.NW_016107755v1     600327 800 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=20898.000000
s hg38.chr6_GL000254v2_alt  1110483 7 +   4827813 AACTGTA
s panTro5.chr6             30075964 2 + 175400573 -----TA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30306603 2 + 173848474 -----TA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6115015 7 +   6154872 AACTCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30204000 7 + 172585720 AACTCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29868096 7 - 170955103 AACTCTA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     760600 7 +    766320 AACTCTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29241591 7 -  71996105 AACTCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      48725 7 +    273075 AACTCTA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2972534 7 -   3067355 AACTCTA
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018496904v1     109976 7 -    383796 AACGCTA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            40040 309 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e cebCap1.NW_016107755v1     600327 800 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=154688.000000
s hg38.chr6_GL000254v2_alt  1110490 36 +   4827813 GCGAAAACTGTCTCCTTCT------CACGTTCCTGG-AAGGTG
s panTro5.chr6             30075966 36 + 175400573 GCAAAAACTGTCTCCTTCT------CACGTTCCTGG-AAGGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30306605 36 + 173848474 GCGAAAACTGTCTCCTTCT------CACGTTCCTGG-AAGGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6115022 36 +   6154872 GCGAAAACTGTCTCCTTCT------CACGTTCCTGG-AAGGTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30204007 36 + 172585720 GCGAAAACTGTTGCCTTCT------CACCTCCCTGG-AAGGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29868103 36 - 170955103 GCGAAAACTGTTGCCTTCT------CACCTCCCTGG-AAGGTG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     760607 36 +    766320 GTGAAAACTGTCTCCTTCT------CACGTTCCTCG-AAGATG
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29241598 36 -  71996105 GTGAAAACTGTCTCCTTCT------CACATTCCTCA-AAGGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      48732 36 +    273075 GTGAAAACTGTCTCCTTCT------CACGTTCCTCA-AAGGTG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2972541 36 -   3067355 GCGAAAAATGTCTCCTTCT------CACGTTCCTCG-AAGGTG
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            40349 43 +    515838 gcaAGGACTGTCTTTTTCTCAGACAGGTCTTTTTGACAAGGCA
i saiBol1.JH378341         I 309 I 3
s aotNan1.NW_018496904v1     109983 36 -    383796 GTGAAAACTGTCTCCTCCT------GACCTCCCTGG-ATGGTG
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e cebCap1.NW_016107755v1     600327 800 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=170808.000000
s hg38.chr6_GL000254v2_alt  1110526 54 +   4827813 CTTTTTGACACAAGAAAGAGGATGTGATTGCTAGGGTCATCATGTCATTGTTTA
s panTro5.chr6             30076002 54 + 175400573 CTTTTTGACACAAGAAAGAGGATGTGATTGCTAGGGTCATCATGTCATTGTtta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30306641 54 + 173848474 CTTTTTGACACAAGAAAGAGGATGTGATTGCTAGGGTCATCATGTCATTGTtta
i panPan2.chr6             C 0 N 0
s gorGor5.CYUI01015250v1    6115058 52 +   6154872 CTTTTTGACACAAGAA--AGGATGTGATTGCTAGGGTCATCATGTTATTGTTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30204043 26 + 172585720 CTTTTT-------------------GGTCACCA---------TGTCCTAGTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29868139 26 - 170955103 CTTTTT-------------------GGTCACCA---------TGTCCTAGTTTA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     760643 48 +    766320 CTTTTTTACATAAGAAAGAGGATGCGATCACTAGAT------TGTCCTGGTTTA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29241634 48 -  71996105 CTTTTTTACATAAGAAAGAGGATGCAATCACTAGAT------TGTCCTGGTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      48768 48 +    273075 CTTTTTTACATAAGAAAGAGGATGCAATCACTAGAT------TGTCCTGGTTTA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2972577 48 -   3067355 CTTTTTGACACAAGAAAGAGGATGCGATCACTAGAT------TGTCCTGGTTTA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            40395 54 +    515838 CTTCCTGACTTAGAAAAGTGGATGTGATTGTTAGGTTCACCACATCCTGGTTTA
i saiBol1.JH378341         I 3 C 0
s cebCap1.NW_016107755v1     601127 54 -   1771730 CTTTTTGACCCAGAAAAGTGGATGTGATTGTTAGGTTCACCACATCCTGGTTTA
i cebCap1.NW_016107755v1   I 800 C 0
s aotNan1.NW_018496904v1     110019 54 -    383796 CTTTTTGACACAAGAAGGAGGATGTGATTGCTAAGGTCACCATGTCCTGGTTCA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=29094.000000
s hg38.chr6_GL000254v2_alt  1110580 4 +   4827813 TTGT
s panTro5.chr6             30076056 4 + 175400573 ttgt
i panTro5.chr6             C 0 N 0
s panPan2.chr6             30197429 4 + 173848474 TTGT
i panPan2.chr6             N 0 C 0
s gorGor5.CYUI01015250v1    6115110 4 +   6154872 TTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30204069 4 + 172585720 TTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29868165 4 - 170955103 TTGT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     760691 4 +    766320 TTGT
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29241682 4 -  71996105 TTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      48816 4 +    273075 TTGT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2972625 4 -   3067355 TTGT
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            40449 4 +    515838 TTGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     601181 4 -   1771730 TTGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     110073 4 -    383796 TTGT
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=1672007.000000
s hg38.chr6_GL000254v2_alt  1110584 317 +   4827813 GTTGCCAGTAAAGTGAAATCAAAATACACA----ATAAATAATAAAATAACCCATGATAAGCCAATGTTTATAATGTACTAACACCACTGAGCCAGTGTTTATAATGTACTGACACACTCCAAGTGTGGGCACAGCTGCAGACATGCCTTGTCTCTTGGGTCAGGACACAGGGTAGAGTGAAATGGAAAGAAATCCCAGTCACTGCAGAAAAGGGCCCCCATGGAAGAGGCCTGGCAGGGAGGCCAGCtgtcccagggccgccatatttagggatgactccccctttctgggcagcactggtttttt--taattatttttgca
s panTro5.chr6             29963744 301 + 175400573 GTTGTCAGTAAaatgaaatcaaaatacatacttcataaataataaaataacccataataagtaaACATTTACAATTTACTCACACCATTGAG-----GTTT---------------CCTCCAGGTGTGAGCACAGCTGCAGACACACCTTGTCGCTTCAGTCAGGACACAGGGCAGAGTGAAATGGGAAGAAACCACAGTCACTGCAG-AAAGGGCCCCCATGGAAGAGGCCTGGCAGGGAGGCCAGCTGCCCCAGGGCCACCATATTTAGAGATGACTTCCCCTTTCTAGGCAGGACTGGGTTTTT-AAAATTCTTTTTGTA
i panTro5.chr6             N 0 C 0
s panPan2.chr6             30197433 301 + 173848474 GTTGTCAGTAAaatgaaatcaaaatacatacttcataaataataaaataacccataataagtaaACATTTACAATTTACTCACACCATTGAG-----GTTT---------------CCTCCAGGTGTGAGCACAGCTGCAGACACACCTTGTCGCTTCAGTCAGGACACAGGACAGAGTAAAATGGGAAGAAACCACAGTCACTGCAG-AAAGGGCCCCCATGGAAGAGGCCTGGCAGGGAGGCCAGCtgccccagggccaccatatttagagatgacttcccctttctaggcaggactgggatttt-aaaattctttttgta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6115114 317 +   6154872 GTTGCCAGTAAAGTGAAATCAAAATACACA----ATAAATAATAAAACAACCCATGATAAGCCAATGTTTATAATGTACTAACACCACTGAGCCAGTGTTTATAATGTACTGACACACTCCAAGTGTGGGCACAGCTGCAGACATGCCTTGTCTCTTGGGTCAGGACACAGGGTAGAGTGAAATGGGAAGAAATCCCAGTCACTGCAGAAAAGGGCCCCCATGGAAGAGGCCTGGCAGGGAGGCCAGCtgtcccagggctgccatatttagggatgactccccctttctgggcagcactggtttttt--aaattatttttgca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30204073 318 + 172585720 GCTGCCAGTAAAGTGAAATCAAAATACACACTTAACAAATAATAAAATAATCCATAATAAGCCAATGTTTATAATGTACTGATACCACTGAACCAGTGTTTATAATGTACTGACACACTCTAAGTGTGGGCACAGCTGCAGCCATGACTTGTCTTTTGGGTCAGGAATTGGGGTAGAGTGAAATGGGAAGAAACCCCAGTCACTGCAGAAAAGGGCCCCCATGGAAGAGGCCGGGCAGGGAGGCCAGCtgtcccagggccaccatatttagggatgactccccctttctggacagcactgttttttg-----ttctttttgta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29868169 317 - 170955103 GCTGCCAGTAAAGTGaaatcaaaatacacacttaacaaataataaaataatccataataaGCCAATGTTTATAATGTACTGATACCACTGAGCCAGTGTTTATAATGTACTGACACACTCCAAGTGTGGGCACAGCTGCAGACATGCCTTGTCTTTTGGGTCAGGAATTGGAGTAGAGTGAAATGGGAAGAAACCCCAGTCACTGCAGAAAAGGGCCCCCATGGAAGAGGCCGGGCAGGGA-GCCAGCtgtcccagggccaccatatttagggatgactccccctttctggacagcactgttttttg-----ttctttttgta
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     760695 317 +    766320 GCTGTCAGTAAAGTGAAATCAAAATACACACTTAATAAATAATAAAATAACCCATAATAAGCCAAAGTTTATAATGTACTGATACCACTGAGCCAGTGTTTATAATGTACTGACACACTCCAAGTGTGGGCACAGCTGCAGACATGCCTTGTCTTTTGGGTCAGGACACAGGATAGAGTGAAATGGGAAGAAACCCCAGTCACTGCAGAAAAGGGCTCCCATGGAAGAGGCTGGGCAGGGA-GCCAGCtgtcccagggccaccatattttgggatgactccccctttctggacagcactgtttttta-----ttctttttgta
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29241686 313 -  71996105 GTTGTCAGTAAAGTGAAATCAAAATACAC----AATAAATAATAAAACAACCCATAATAAGCCAAAGTTTATAATGTACTGATACCACTGAGCCAGTGTTTATAATATACTCACACACTCCAAGTGTGGGCACAGCTGCAGACATGCCTTGTCTCTTGGGTCAGGAATTGGGGTAGAGTGAAATGGGAAGAAACCCCAGTCACTGCAGAAAAGGG-CCCCATGGAAGAGGCCTGGCAGGGAGGCCAGGtgttccagggccaccatattttgggatgattccccctttctggacagcactgtttttta-----ttctttttgta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      48820 318 +    273075 GTTGTCAGTAAAGTGAAATCAAAATACACACTTAATAAATAATAAAATAACCCATAATAAGCCAAAGTTTATAATGTACTGATACCACTGAGCCAGTGTTTATAATATACTGACACACTCCAAGTGTGGGCACAGCTGCAGACATGCCTTGTCTCTTGGGTCAGGAATTGGGGTAGAGTGAAATGGGAAGAAACCCCAGTCACTGCAGAAAAGGGCCCCCATGGAAGAGGCCGGGCAGGGAGGCCAGTtgtcccagggccaccatattttgggatgactccccctttctggacagcactgtttttta-----ttctttttgta
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2972629 312 -   3067355 GTTGTCAGTAAAGTG-----AAAATACACACTTAATAAATAATAAAATAACCCATGATAAGCCAATGTTTATAATGTACTGATACCACTGAGCCAGTGTTTATAATGTACTGACACACTCCAAGTGTGGGCACAGCTGCAGACATGCCTTGTCTCTTGGGTCAGGACACGGGATAGAGAGAAATGGGAAGAAACCCCAGTCACTGCAGAAAAGGGCCCCCATGGAAGAGGCCTGGCAGGGA-GCCAGCTGTCCCAGGGCCACCATATTTTGGGATGACTCCTCCTTTCTGGGTAGAACTGTTTTTTA-----TTCTTTTTGTA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            40453 301 +    515838 GTTTCCGGTAAAATGAAATCAAAATACATACCTCATAAGTAATCAAATAACCCATAAGAAGCAAATATTTATAATCTACTGACACCACTCAG-----GTTT---------------CCCCCAAGTGTGGGCACAGCTGAAGACACACCTTGTCCCTTGAGTCAAGACACTGGTTAGGGTAAAATGGGAAGAAACCCCAGTCACTGCAG-AAAGGGTCCCCATGGAAGAGGCCTGGCAGGGGAGTCTGCTGTCCCAGGTCCACCATATTTGAGGATGACTCCCA-CTTCTGGGAAGGACTTTTTTTTTTTAAATTGTTTTTGTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     601185 301 -   1771730 GTTTCCAGTAAAATGAAATCAAAATATATACCTCATAAGTAATAAAATAACCCATAATAAGCAAATATTTATAATGTACTGACACCACTGAG-----GTTT---------------CCTCCAAGTGTGGGCACAGCTGCAGACACATGTTGTCCCTTGATTCAAGACACTGGTTAGAGTAAAATGGGAAGAAACCCCAGTCACTGCAA-AAAGGGCCCCAATGGAAGAGGCCTAGCAGTGGAGTCTCCtgtcccaggtccgccatatttggggatgactgccc-cttctgggaaggactttttttaaaaaaattatttttgta
i cebCap1.NW_016107755v1   C 0 N 0
s aotNan1.NW_018496904v1     110077 316 -    383796 GTGACCAGTAAAGTGAAATCTAAATACACACTTAATAAATAATAAAATAACCCATAATAAATCAATGTTTATAATGTACTGATACCACTGAGCCAGTGTTTATAACGTACCGGCAAACTCCAAGTGAGGGCACAGCTGCAGACACACCTTGTCTCTTGGGTCAGGACAGGGGGCAGAGTGAAATAGGAAGAAACCCCAGTCACTGCAG-AAAGGGCCGCCATGGAAGAAGTCTGGCAGGGAGGCCAGCtgtcccaaggtcaccatatttagggatgaccccccttttctgggcaacattttt-----aaaaattctttttgc-
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=845131.000000
s hg38.chr6_GL000254v2_alt  1110901 151 +   4827813 ttcacagtagttctgaaattgcaggatgctgagacccagcactggtcagttacaccgtctc-ttcttcaccattaaatactgtgccaaacagcaccttcatacatttccatcctcttccagGAGAGAATCAAAACAACAATGGAC-ACATTGA
s panTro5.chr6             29964045 149 + 175400573 TTCATAGTTGTTCTGAAGTTGCAGGATGATGAGACCCAGCACTGGTGAGTTATACCGTCTCTTTCTTCCCTATTAAATTCTGTGCCAAACAGCACCTTCATATATTTATCTCCTCTTCCTGGAGAGAAT---AAAAACAATGGAA-AAATTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30197734 149 + 173848474 ttcatagttgttctgaaattgcaggatgatgagacccagcactggtgagttatactgtctctttcttccctattaaattctgtgccaaacagcaccttcatatATTTATCTCCTCTTCCTGGAGAGAAT---AAAAACAATGGAA-AAATTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6115431 137 +   6154872 ttcacagtagttctgaaattgcaggatgctgagacccagcactggtcagttacacc---------------attaaatgctgtgccaaacagcaccttcatacatttccatcctcttccagGAGAGAATCAAAACAACAATGGAC-ACATTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30204391 152 + 172585720 ttcacagtagttctgaaattgcaggatgctgagacccagcactggtcaattacactgtctctttcttcaccattaaatgctgtgccaaacagcaccttcatacatttccatcctcttccagGAGAAAATCAAAACAACAATGGAC-ACACTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29868486 152 - 170955103 ttcacagtagttctgaaattgcaggatgctgagacccagcactggtcaattacactgtctctttcttcaccattaaatgctgtgccaaacagcaccttcatacatttccatcctcttccagGAGAAAATCAAAACAACAATGGAC-ACACTGA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     761012 146 +    766320 ttcacagtagttctgaaattgcaggatgctgagacccagcagtggtcaattaca------ctttcttcaccattaaatgctgtgccaaataGCACCTTCATACATTTCTATCCTCTTCCAGGAGAGAATCAAAACAACAATGGAC-ACATTGA
i cerAty1.NW_012002711v1   C 0 I 481
s chlSab2.chr17            29241999 152 -  71996105 ttcacagtagttctgaaattgcaggatgctgagacccagcagtggtcagttacactgtctctttcttcaccattaaatgctgtgccaaatagcaccttcatacatttccatcctcttccagGAGAGAATCAAAACAACAATGGAC-ACATTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      49138 152 +    273075 ttcacagtagttctgaaattgcaggatgccgagacccagcagtggtcagttacactgtctctttcttcaccattaaatgctgtgccaaatagcaccttcatacatttccatcctcttccagGAGAGAATCAAAACAACAATGGAC-ACAATGA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2972941 146 -   3067355 TTCACAGTAGTTCTGAAATTGCAGGATGCTGAGAGCCAGCAGTGGTCAGTTACACTGTCTCTTTCTTCACCATTAAATGCTGTGCCAAAAAG------GATATATTTCTATCCTTTTCCAGGAGAGAATCAAAACACCAATGGAC-ACATTGA
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            40754 152 +    515838 TCCACATTAGTTCTGAAATTGCAGAATGTGCAGACTGAGCACTGGTCAATTATACTATCTCTTTCTTCCCTATAAAATAC-GTGCCAAAGGGCACCCTCATGCACTCCTATCCTCTTCCTGGGGAGGAGCAAAACAATAATGGACAACATTAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     426547 151 -   1771730 TTCACAGTAGTTCTGAAATTGCAGGATGCTGAGACCCAGCACTGGTCAGTTACACTGTCTCTTCCTTCATCATTAAATGCTGTGCCAAACAGCA-CCTCATACATTTCTATCCTCTTCCAGGAGAGAATCAAAACAGCAATGGAC-ACATGGA
i cebCap1.NW_016107755v1   N 0 C 0
s aotNan1.NW_018496904v1     110393 151 -    383796 -tcacagtagttctgaaattgcaggatgccgagacccagcactgatcagttacactgtctcttccttcatcattaaacgctgtgccaaacaGCAACTTCATACATTTCTATCTTCTTCCAGAAAAGAATCAAAACAATAATGGAC-ACACAGA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=703648.000000
s hg38.chr6_GL000254v2_alt  1111052 171 +   4827813 TGCATGCAAAAATACTTTAAATATGTGCTATCAGAAGTAGCTACTAAAACATTAATTCCACTGAAATGAGGGAGGCTGTAAAAAA-GAAAAACAttgcatacccgtattcacagcaacattactcaccatagccaagacaaggaagcaaacaaagcacccatcaacacatga
s panTro5.chr6             29964194 156 + 175400573 ACCATACAAACATACTTTAAATATGTGCTGTCAGAAGTAGCTACTAAAGGATTAATTCCACCAAAGTGAGGGAAGGTTT-GAAAA-GAAAAACAttgtatacccatattcaaagaagcattattcacgatagccaagacaa--------------cacacaccaacacatga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30197883 154 + 173848474 ACCATACTAACATACTTTAAATATGTGCTGTCAGAAGTAGCTACTAAAGGATTAATTCCACCAAAGTGAGGGAAGGTTT-GAAAA-GAAAAACAttgtatgcccatattcaaagcagcattattcacgatagccaagacaa----------------cacaccaacacatga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6115568 170 +   6154872 TGCATGCAAAAATACTTTAAATATGTGCTATCAGAAGTAGCTACTAAAAcattaattccactgaaatgagggaggctgt-aaaaa-gaaaaacattgcatacccgtattcacagcaacattactcaccatagccaagacaaggaagcaaacaaagcacccatcaacacatga
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30204543 169 + 172585720 AACATGTAAACATGCTTTAAATATGTGCTGTCACAAGTAGCTACTAAAATATTAATTCCACCGAAAAGAGGAAGG-TGT-GAAAA-AGAAAACAttgtatacccatattcacagcagcatcactcaccatagccaagataaggaagcaaacaaagcagccatcaacacatga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29868638 169 - 170955103 AACATGTAAACATGCTTTAAATATGTGCTGTCACAAGTAGCTACTAAAATATTAATTCCACCGAAAAGAGGAAGG-TGT-GAAAA-AGAAAACAttgcacacccatattcacagcagcatcactcaccatagccaagacaaggaagcaaacaaagcagccatcaacacatga
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29242151 170 -  71996105 AACATGCAAACATACTTTAAATATGTGCTGTCACAAGTAGCTACAAAAAcattaattccaccaaaatgagagagg-tgt-gaaaacagaaaacattgcatacccgtattcacagcagcattactcaccatagccaagacaaggaagcaaacaaagaagccatcaacacctgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      49290 170 +    273075 AACATGCAAACATACTTTAAATATGTGCTGTCACAAGTAGCTACAAAAACATTAAAACCACCAAAATGAGAGAGG-TGT-GAAAACGGAAACCAttgcatacccgtattcacagcagcataactcaccatagccaagacaaggaagcaaacaaagcagcaatcaacacctgc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2973087 170 -   3067355 AACATGCAAACATACTTTAAATATGTGCTGTCACAAGTAGCTACTAAAACATTAATTCCACCAAAATGAGGAAGG-TGT-GAAAACGGAAAACAttgtatacctatattcacagcagcattattcaccatagccaagacaaggaagcaaacaaagcagcctttaacacctga
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            40906 165 +    515838 AAC----AAACTTACTTTAAATATGTGCTGTCAGAAGTAGCTACTGAAAGattaattccagcaaaatgagggacg--tt-acagaagaaaacatctgcacacccatgtccatagcagcattattcacaacagccacgaaatagaggcaaccaaagcatcacttaacagatga
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     426698 170 -   1771730 AACATGGAAGCATACTTTAAATATGTGCTGTCAGAAGTAGCTACT-ATATATTAATTCCAccaaaatgagagaggattt-gaaaaacaaaaactttgcatgcccaaattcacagcagcattattcaccatagccaagaaaagaaagcaaacacagcacccatcaacacatga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     110544 170 -    383796 AACATGCGAACATACTTTAAATGTGTGCTGTCAGAAGTAGctact-aaatattaattccaccaaaatgaggaagagtgt-gaaaaagaaaaacattgcatacccatattcacagcaacattattcaccatagccaagaaaagaaagcaaacaaagcacctatcaacacatga
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e cerAty1.NW_012002711v1     761158 481 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=933456.000000
s hg38.chr6_GL000254v2_alt  1111223 173 +   4827813 atagatgaagaacatgtggtctatgtaggcaatggaatatgattcaaccttaaaaagaaggaaattctgttacatgctgcaacatggatgaacctggagaacaatgctaagtgtaataagccaatcacaaggaaattccaatactgcgcaattcg--ttatatgcggcgtctaaa
s panTro5.chr6             29964350 168 + 175400573 ----atgaagaaaatgtggtatatatagacaacagaatattattcagcctt---aagaaggaaacctggtcacaggctgcaacagggatgaacctgaaggacactgctaagtaaaataagccaatcacaaagaaaacccaatactgcacatttccatttatatgaggtgtctaaa
i panTro5.chr6             C 0 I 64
s panPan2.chr6             30198037 168 + 173848474 ----atgaagaaaatgtggtatatatcgacaacggaatatcattcagcctt---aagaaggaaacctggtcacaggctgcaacagggatgaacctgaaggacactgctaagtaaaataagccaatcacaaagaaaacccaatactgcacatttccatttatatgaggtgtctaaa
i panPan2.chr6             C 0 I 60
s gorGor5.CYUI01015250v1    6115738 173 +   6154872 acagatgaagaacatgtggtctatgtaggcaatggaatatgattcaacctt-aaaagaaggaaattctgttacatgctgcaacatggatgaacctggagaacaatgctaagtgtaataag-caatcacaaggacattccaatactgcacaattccagttatatgcggcgtctaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30204712 175 + 172585720 atagatgaagaacatgtagtctgtgtacacaatggaatatgattcaaccttaaaaagaaggaaattctgttatatgctgcaacatggatgaacctggagaacaatgctgggtgaaataagccaatcataaggaaattccaatactgcacaattccagttatgtgaggcatctaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29868807 175 - 170955103 atagatgaagaacatgtagtctgtgtacacaatggaatatgattcaaccttaaaaagaaggaaattctgttatatgctgcaacatggatgaacctggagaacaatgctgggtgaaataagccaatcacaaggaaattccaatactgcacaattccagttatgtgaggcatctaaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     761639 175 +    766320 atagatgaaaaacatgtggtctatgtagacaacggaatatgattcaaccttaaaaagaaggaaattctgttatatgccgcaacatggatgaacctggagaacaatgctaagtgaaataagccaatcataaggaaatcccaatactgcacaattccagttacatgaggcatctaaa
i cerAty1.NW_012002711v1   I 481 C 0
s chlSab2.chr17            29242321 175 -  71996105 atagatgaaaaacatgtggtctgtgtagacaacggaatatgattcaaccttaaaaagaaggaaattctgttatatgccacaacatggatgaacctggaaaacaatgctaagtgaaataagccaatcataaggaaattccaatactgcacaattccagttatatgaggcatctaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      49460 175 +    273075 atagatgaaaaacatgtggtctgtgtagacaacggaatatgattcaaccttaaaaagaacgaaattctgttatatgccgcaacatggatgaacctggagaacaatgctaagtgaaataagccaaacataaggaaattccaacactgcacaattccagttatatgaggcatctaaa
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2973257 175 -   3067355 atagatgaagaacatgtggtctatgtagacaacggcatatgattcaaccttaaaaagaaggaaattctgttatatgctgcaacatggatgaacctggagaacaatgctaggtgaaataagccaatcacaaggaaattccaatactgcacaattccagttatatgaggcgtctaaa
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            41071 169 +    515838 attgatcaagaaaatgtggtacatacagacaatggagtattattcagcc-taaaaag-aggaaatcccattataggctgcactatggacgaacctggagaacatggctaggtgaaataagc----cacaaagaagctccaacgctgcactattccatttagatgaggcgtctgaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     426868 171 -   1771730 atagattaagaaaatgtggtctacgtagacaatagaatattattcacccataaaaagcaggaaattctgttacatgctgcaacatggatcaacctggagaaca----taagtgaaataagccaatcacaaagactttccaatactgcacaattccagttatacgaggtgtctaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     110714 174 -    383796 atagattaagaaaatgtggtctacgtagacagtagaatattattcacccacaaaaagcaggaaattctgttatatgctgcaatatggatcaacctggagaacattgcta-gtgaaataagccaatcacaaagacattccaatactgcgcaattccagttaaaagaggcgtctaaa
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=239858.000000
s hg38.chr6_GL000254v2_alt  1111396 70 +   4827813 ctcttagaacctgaaagtagaatggcggctgccagtggttaggctgg------ggggattcatgaggagattt-------tca
s gorGor5.CYUI01015250v1    6115911 69 +   6154872 ctcttagaacctgaaagtagaatggcggctgccaggggttaggct-g------ggggattcatgaggagattt-------tca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30204887 66 + 172585720 ctc--agaacctgaaagtagaatggcgtctgccaggggtttggtt--------ggggattcatgaggagtttt-------ggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29868982 66 - 170955103 ctc--agaacctgaaagtagaatggtggctgccaggggtttggtt--------ggggattcatgaggagtttt-------ggg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     761814 68 +    766320 ctcttggaacctgaaagtagaatggtggctgccaggggttcagtt--------ggggattcatgaggagtttt-------ggg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29242496 68 -  71996105 ctcttagaacctgaaagtagaatggcggctgccaggggttcagtt--------ggggattcatgaggagtttt-------ggg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      49635 68 +    273075 ctcttagaacctcaaagtagaatggcggctgccaggggttcagtt--------ggggattcatgaggagtttt-------gag
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2973432 68 -   3067355 ctcttagaacctgaaagtagaatggcggctgccgggggttcagtt--------ggggattcatgaggagtttt-------ggg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            41240 83 +    515838 cccttagaagctgaaagtagtatggtgattgccaaaggctgggtgaggcgaatgggggttaatgaggagtttttgttcaatga
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     427039 70 -   1771730 ctcttagaacttgaaattagaatggtggctgcccagggttgtgttgg------ggggattcaagagaagtttt-------tgg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     110888 70 -    383796 ctcttagaacctgaaattagaacagtggttgccaggggttgggttga------ggggattcatgagaaatttt-------tgg
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panPan2.chr6             30198205 60 + 173848474 I
e panTro5.chr6             29964518 64 + 175400573 I

a score=324655.000000
s hg38.chr6_GL000254v2_alt  1111466 61 +   4827813 gcgtagagtttcagttttgcaagatgaaaagttctagagatctgttgcataacaatgtg-ct
s panTro5.chr6             29964582 62 + 175400573 gcatagagtttcagtgttgcaagatgaaaagttctagagatctgttgcacaacaatgtattt
i panTro5.chr6             I 64 C 0
s panPan2.chr6             30198265 62 + 173848474 gcatagagtttcagtgttgcaagatgaaaagttctagagatctgttgcacaacaatgtattt
i panPan2.chr6             I 60 C 0
s gorGor5.CYUI01015250v1    6115980 61 +   6154872 gcatagagtttcagttttgcaagatgaaaagttctagagatctgttgcataacaatgtg-ct
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30204953 62 + 172585720 gcatagagtttcagttttgcaagacaaaacattgtagagatctgttgcataacaatgggctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29869048 62 - 170955103 gcatagagtttcagttttgcaagacaaaacattgtagagatctgttacataacaatgggttt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     761882 62 +    766320 gcatagagtttcagttttgcaaaatgaaacattcgagagatctgttgcataacaatgggctt
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29242564 62 -  71996105 gcatagagtttcagttttgcaaaatgaaacgttctagagatctgttgcataacaatgggctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      49703 62 +    273075 gcatagagtttcagttttacaaaatgaaacgttctagagatctgttgcataacaatgggctt
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2973500 62 -   3067355 gaatagagtttcagttttgcaaaatgcaacattctagagatctgttgcataacaatgtgctt
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            41323 58 +    515838 acatagagtttcagttttgtaagat---aagttatcaggatctgtggcacaacagtgtgct-
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     427109 61 -   1771730 gtatagagtttcagttttgcaagatgaaaagttctggagatctgctgcataacaatgtgct-
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496904v1     110958 61 -    383796 gtatcgagtttgagttttgaaagatgaaaagttctagagatctgctgcataacaatgtgct-
i aotNan1.NW_018496904v1   C 0 I 14
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=2504435.000000
s hg38.chr6_GL000254v2_alt  1111527 540 +   4827813 acagttcatattatagtactctatacttaaaaattg-ttacgataccaaattttatataatatagattttggcgcaatga-aaaaaaTAATTAGCTCTGATACCAACTTAGGAAAAGAGCACATGAATTTATTGAAAATATATTAGCATGTGCTTACTATGAA-AAAGAGATGCAGAAAACTGTGAGACAAAAAGAGAGATccttgctaccccagctattatccatgaaccagcagaaccagcatctcatgaaactggacagaaaggctcacaggcccagccttgacaggttg-atcagtctgca-tttgtcaggaccccaggtggctcCACTGCATGTA-AAGCACCGccccagatggtggtggagggagatcctaggaaggtgactctgtcccacaggtagaagcctccagtccagatgggag-cagccagaagggcccaagagggacatttccaagaaagtaaaattaatagaaagttcaaagtctctaatttcttaacagagtcacagaaatggaacagatatc-aaagttaaattaatgagag
s panTro5.chr6             29964644 535 + 175400573 acagttaatactgtactactgtatactttaaaatag-ttaagataccaaattttacataatgtagtttttggcccaagga-aaagaCTAATTAGCCCTGTTACTAATTTAGGGAAAAAGTACATGAATTCATTAAAAATATATTAGTATGCGCTTACCTT--------AGATACAGAAAACTATGAGACAAAAAGAGAGATccctgctaccccagctatcacccatgaaccaggaaaatcagcacctcctgaaactagacagaaaggctcacaggcccagccttgacatgttgaatcagtctgcattttggctggaacccaggtggctcCACTGCATGTA-AAGCACCtccccagatagtgatggagggagatcctaggacagtgactctgctccacggggagaagcctccagtccagatgggag-cagccagaagggcccaggagggacatttccaagaagataaaattaacagaatgtccaaagtgtccaacgtcttgaaagaatcatacaaacaaaagagatatc-aaacttaaattaatgagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30198327 535 + 173848474 acagttaatactgtactactgtatactttaaaatag-ttaagataccaaattttacataatgtagtttttggcccaagga-aaagaCTAATTAGCCCTGTTACTAATTTAGGGAAAAAGTACATGAATTCATTAAAAATATATTAGTATGCGCTTACCTT--------AGATACAGAAAACTATGAGACAAAAAGAGAGATccctgctaccccagctatcacccatgaaccaggaaaatcagcacctcctgaaactagacagaaaggctcacaggcccagccttgacatgttgaatcagtctgcattttggctggaacccaggtggctcctctgcatgta-aagCACCtccccagatagtgatggagggagatcctaggacagtgactctgctccacggggagaagcctccggtccagatgggag-cagccagaagggcccaggagggacatttccaagaagataaaattaacagaatgtccaaagtgtccaacgtcttgaaagaatcatacaaacaaaagagatatc-aaacttaaattaatgagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6116041 536 +   6154872 acagttcatattatagtactctatacttaaaaattg-ttacgata-caaattttatataatatggattttggcgcaatga-aaaaa-TAATTAGCTCTGTTACCAACTTAGGAAAAGAGCACATGAATTTATTGAAAATATAATAGCATGTGCTTACTATGAA-AAAGAGATGCAGAAAACCGTGAGACAGAAAGAGAGATccttgctaccccagctattatccatgaaccagcagaaccagcatctcatgaaactggacagaaaggctcacaggcccagccttgacaggttg-atcagtctgca-tttgtcaggatcccaggtggctcCACTGCATGTA-AAGCACTGccccagacggtggtggagggagatcctaggaaggtga--ctgtcccacaggtagaagcccccagtccagatgggag-cagccagaagggcccaggagggacatttccaagaaagtaaaattaatagaaagttcaaagtctctaatttcttaacagagtcacagaaatggaacagatatc-aaagttaaattaatgagag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30205015 542 + 172585720 gcagttaatattatagtactctatacttaaaaatggtttgtgataccaaaatttacataatatggattttggcacaatgaaaaaaaATAATTAGCTGTCTTACTAACTTAGGAAAAGAGCTTATGAATTCATTGAAAATATATTTGTATGTGCTTACTATGAA-AAAGAGATACAGAAAACTTTGAGACAAAAAGAGAGATccttgctaccccagctaccatccatgaaccag-agaatcagcatctcatgaaactagacagaaaggctcacaggcccagccttgacatcttgaatcattctgca-tttggaaggaccccaggtggctcCACTGCATGTa-aggcactgccccagatgctggtggagggacatcctaggatggtgactctgccctacaggtaggagcctccagtccagatggggg-cagccagaagggcccaggagggacatttccaagaaagtaaaattaatagaatgtccaaagtctctaacttcttaaaagagtcatacaaatagatgagatatc-aaagttaaattaatgagag
i rheMac8.chr4             C 0 I 324
s macFas5.chr4             29869110 542 - 170955103 gcagttaatattatagtactctacacttaaaaatggtttgtgataccaaattttacataatatggattttggcacaatgaaaaaaaATAATTAGCTGTCTTACTAACTTAGGAAAAAAGCTTATGAATTCATTGAAAATATATTTGTATGTGCTTACTATGAA-AAAGAGATACAGAAAACTTTGAGACAAAAAGAGAGATccttgctaccccagctaccatccatgaaccag-agaatcagcatctcatgaaactagacagaaaggctcacaggcccagccttgacatcttgaatcattctgca-tttggaaggaccccaggtggctcCACTGCATGTa-aggcactgccccagatgctggtggagggacatcctaggatggtgactctgccctacaggtaggagcctccagtccagatggggg-cagccagaagggcccaggagggacattttcaagaaagtaaaattaatagaatgtccaaagtctctaacttcttaaaagagtcatacaaatagatgagatatc-aaagttaaattaatgagag
i macFas5.chr4             C 0 I 2
s cerAty1.NW_012002711v1     761944 537 +    766320 acagttaatatgatagtactctatactt-aaaatgg-ctatgatacaaaattttacataatatggttttcggcacaat---aaaaaaTAATTAGCTCTCTTATTAACTTAGGAAAAAAGCACATGAATTCATTGAAAATAAATTAGTATGTGCTTACTATGGA-AAAGAGACACAGAAAAC-TTGAGACAAAAAGAGAGATccttgctaccccagctatcacccacgaatcagcagaatcagcatctcatgaaactagacagaaaggctcacaggcccagccctgacatcttgaatcagtctgca-tttgtcaggaccccaggtggctcCACTGCATGTa-aggcactgccccagatggtggtggagggacatcctaggatggtgactctgccccacaggtaggagcctccagtccagatgggag-caaccacaagggcccaggagggacatttccaagaaagtaaaattaataaactgtccaaagtctctgacttcttaaaagagtcacagaaatggaacagatacc-aaagttaaattaatgagtg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29242626 537 -  71996105 acagttaatatgatagtactctatactt-aaaatgg-ctgtgatacaaaattttacataatatggttttcggcacaat---aaaaaaTAATTAGCTCTCTTACTAACTTAGGAAAAAAGCACATGAATTCATTGAAAATATATTAGTATGTGCTTACTATGGA-AAAGAGACACAGAAAAC-TTGAGACAAAAAGAGAGATccttgctaccccagctatcacccatgactcagcagaatcagcatctcatgaaactagacagaaaggctcacaggcccagccttgacatcttgaatcagtctgca-tttgtcaggaccccgggtggctcCACTGCATGTa-aggcactgccccagatggtggtggagggacatcctaggatggtgactctgccccacaggtaggagcctccagtccagatgggag-cagtcagaagggcccaggagggacatttccaagaaagtaaaattaatagactgtccaaagtctctaacttcttgaaagagtcacagaaatggaacagatatc-aaagttaaattaatgagcg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      49765 537 +    273075 acagttaatatgatagtactctatactt-aaaatgg-ctatgatacaaaattttacataatatggttttcggcacaat---aaaaaaTAATTAGCTCTCTTACTAACTTAGGAAAAAAGCACATGAATTCATTGAAAATATATTAGTATGTGCTTACTATGAA-AAAGAGACACAGAAAAC-TTGAGACAAAAAGAGAGATccttgctaccccagctatcacccatgaatcagcagaatcagcatctcatgaaactagacagaaaggctcacaggcccagccttgacatcttgaatcagtctgca-tttgtcaggaccccaggtggctcCACTGCATGTa-aggcactgccccagatggtggtggagggacatcctaggatggtgactctgccccacaggtaggagcctccagtccagatgggag-caaccacaagggcccaggagggacatttccaagaaagtaaaattaatagactgtccaaagtctctaacttcttaaaagagtcacagaaatggagcagatatc-aaagttaaattaatgagcg
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2973562 535 -   3067355 acagttaatatgatagtactctatactt-aaaatga-ctatgatacaaaattttacataatatggtttttggcaca-----aaaaaaTAATTAGCTCTCTTACTAACTTAGGAAAAAAGCACATGAATTCATTGAAAATATATCAGTATGTGTTTACTATGAA-AAAGAGACACAGAAAAC-TTGAGACAAAAAGAGAGATccttgctaccccagctatcacccatgaatcggcagaatcagcatctcatgaaactagacagaaacactcacaggcccagccttgacatcttgaaacagtctgca-tttgtcaggaccgcaggtggctcCACTGCATGTa-aggcactgccccagatggtggtggagggacatcccaggatggtgactctgccccacaggtaggagcctccagtccagatgggag-caaccagaagggcccaggagggacatttccaagaaagtaaaattaatatactgttcaaagtctctaacttcttaaaagagtcacagaaatagaacagatatc-aaagttaaattaatgagcg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            41382 518 +    515838 acagataacaccacagtactgcacacttcaaaacag-ttaggataccaaattttatgtaatgtgttttctggcacaatga-aaaaaaAG-------CTGTTATTAATTGAGGAAAAAAGCACAGAAGTTCAGTAAAAATACACTAGCATATGCTTACCGTGAAGAAAGTGATACAGAAAACCAT----------GAGAGATccttgcta---------tcatccatgaaccagcagattcaacatctcatgaaacaagacagaaagattcaaaggcccagccttgacatctttaatcagtttgaattttggcaggaccccaggtggctccacttcacacagaagcactgtcccagatggtggtggagggacatcctaggacggtggctctgct-cataggtagcagcctccatttcagatgggagaataccagaagggcccaggagtgatatttccaagaaagtaaaattaatagaatgcccaaagtttctgacttatcaaaagagtcatacaaacagaagtgatatc-aaagttaaattaatgagag
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     427171 540 -   1771730 acagttaatattatagtcctgtatacttaaacatgg-ttacaatgccaaattttacataatatgatttttgacacattga-aaaaaaTAATTACCTCTGTTATTAATTTAGGAAAAAAGGACATAAATTCACCAAAAATATATTAGTATGTACCTATTATGAA-AACGAGATACTGAAAACTGTGAGAC--AAAGAGAGATccttgctaccccagctgtcagccatgaaccagctgaatcagcatctcatgaaactagacagaaaggctcacaggcccagccttgacgtcgtgaatcagtctgca-tttggcaggaccccaggtggctctgctgcatgta-aagcttgGccccagatgctggtggagggagatcctaggatggtgactctgctccacaggtggaagcctccagtccagatgggag-ctgctggaagggcccaggagagatgtgtccatgaagctaaaatgaatagaacacctaaagtctccaacttctgaaaagagtcacacgaatggaagagatttcaaaagttaaattaatgagag
i cebCap1.NW_016107755v1   I 1 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019  14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=60832.000000
s hg38.chr6_GL000254v2_alt  1112067 17 +   4827813 ttatctagaacataaac
s panTro5.chr6             29965179 14 + 175400573 tta---ataaaataaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30198862 14 + 173848474 tta---ataaaataaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6116577 17 +   6154872 ttatctagaacataaac
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29869654 17 - 170955103 ttatgtagaaaataaac
i macFas5.chr4             I 2 I 306
s cerAty1.NW_012002711v1     762481 17 +    766320 ttatctagaaaataaac
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29243163 17 -  71996105 ttatctagaaaataaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      50302 17 +    273075 ttatctagaaaataaac
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2974097 17 -   3067355 ttatctagaaaataaac
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            41900 17 +    515838 ttatctagaagataaac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     427711 17 -   1771730 ctatctagaaaataaac
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e rheMac8.chr4             30205557 324 + 172585720 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=6006.000000
s hg38.chr6_GL000254v2_alt  1112084 1 +   4827813 a
s panTro5.chr6             29965193 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30198876 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6116594 1 +   6154872 a
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30205881 1 + 172585720 a
i rheMac8.chr4             I 324 C 0
s macFas5.chr4             29869977 1 - 170955103 a
i macFas5.chr4             I 306 C 0
s cerAty1.NW_012002711v1     762498 1 +    766320 a
i cerAty1.NW_012002711v1   C 0 I 929
s chlSab2.chr17            29243180 1 -  71996105 a
i chlSab2.chr17            C 0 N 0
s manLeu1.NW_012101121v1      50319 1 +    273075 a
i manLeu1.NW_012101121v1   C 0 I 940
s colAng1.NW_012115566v1    2974114 1 -   3067355 a
i colAng1.NW_012115566v1   C 0 I 928
s saiBol1.JH378341            41917 1 +    515838 a
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     427728 1 -   1771730 a
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=79301.000000
s hg38.chr6_GL000254v2_alt  1112085 30 +   4827813 aaaacaaaggcaagtattaacttgaggaag
s panTro5.chr6             29965194 30 + 175400573 aaaacaaatgcaagtattaactccaagaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30198877 30 + 173848474 aaaacaaatgcaagtattaactccaagaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6116595 30 +   6154872 aaaacaaaggcaagtattaacttgaggaag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30205882 30 + 172585720 aaaacaaaggcaaatattaacttgaggaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29869978 30 - 170955103 aaaacaaaggcaaatattaacttgaggaaa
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29123462 30 -  71996105 aaaacaaaggcaagtattaacttgaggaaa
i chlSab2.chr17            N 0 C 0
s saiBol1.JH378341            41918 29 +    515838 aaaac-aaggcaagtattaactccaggagg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     427729 30 -   1771730 aaaacaaaagcaagtattagcttgaggaaG
i cebCap1.NW_016107755v1   C 0 I 1
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2974115 928 -   3067355 I
e manLeu1.NW_012101121v1      50320 940 +    273075 I
e cerAty1.NW_012002711v1     762499 929 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=157577.000000
s hg38.chr6_GL000254v2_alt  1112115 84 +   4827813 aacaaatactacgaagcaagtgaaaagtagtcaAGTTGACATATGAGAAGATGAGTCACGG--AAAAAAACAAGGAGTGGCTGAAT
s panTro5.chr6             29965224 86 + 175400573 aaccaatgttgtacaggcagtgaaaagtagtccagttgacatatgagaggattagtcatggtaaaagaaacaagagatggctgaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30198907 86 + 173848474 aaccaatgttgtacaggcagtgaaaagtagtcCAGTTGACATATGAGAGGATTAGCCATGGTAAAAGAAACAAGAGATGGCTGAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6116625 86 +   6154872 aacaaatactacgaagcaagtgaaaagtagtcaagttgacatatgagaagatgagtcacggaaaaagaaacaaggaatggctgaat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30205912 86 + 172585720 agcaaatactgtgaagcaaatgaaaagtagtcaagctgtcatatgagaagattagtcatggaaaaagaaacaaggaatgtctgaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29870008 86 - 170955103 agcaaatactgtgaagcaaatgaaaagtagtcaagctgtcatatgagaagattagtcatggaaaaagaaacaaggaatgtctgaac
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29123492 86 -  71996105 agcaaatactgcgaagcaaatgaaaagtagtcaagctgtcatatgagaagattagtcacggaaaaagaaacaaggaatgtctgaac
i chlSab2.chr17            C 0 N 0
s saiBol1.JH378341            41947 83 +    515838 aacaaa---tgagccagaagtgaaaagtattaaaggtgacatatgagagtattagtcatggaaaaggaaacaaggaatgactgaac
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e cebCap1.NW_016107755v1     427759  1 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2974115 928 -   3067355 I
e manLeu1.NW_012101121v1      50320 940 +    273075 I
e cerAty1.NW_012002711v1     762499 929 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=139793.000000
s hg38.chr6_GL000254v2_alt  1112199 32 +   4827813 TAAACATAATTACTATATAAATATACTGGGAA
s panTro5.chr6             29965310 32 + 175400573 taaacataatcactatataaatatactgggaa
i panTro5.chr6             C 0 I 116
s panPan2.chr6             30198993 32 + 173848474 TAAACATAATCACTATATAAATATACTGGGAA
i panPan2.chr6             C 0 I 116
s gorGor5.CYUI01015250v1    6116711 32 +   6154872 taaacataattactatataaatatgctgggaa
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30205998 32 + 172585720 taagcataattactatataaatataccaggaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29870094 32 - 170955103 taagcataattactatataaatataccaggaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     763428 32 +    766320 TAAACATAATTACTATATAAATATACCGGGAA
i cerAty1.NW_012002711v1   I 929 C 0
s chlSab2.chr17            29244115 32 -  71996105 taaacataattactatataaatatatcgggaa
i chlSab2.chr17            N 0 C 0
s manLeu1.NW_012101121v1      51260 32 +    273075 taaacataattactatataaatatatcgggaa
i manLeu1.NW_012101121v1   I 940 C 0
s colAng1.NW_012115566v1    2975043 32 -   3067355 TAAACATAATTAGTATATAAATATATCGGGAA
i colAng1.NW_012115566v1   I 928 C 0
s saiBol1.JH378341            42030 31 +    515838 caaacataattactatat-aatatactgggaa
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e cebCap1.NW_016107755v1     427759  1 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=110651.000000
s hg38.chr6_GL000254v2_alt  1112231 35 +   4827813 AAGGAAAGAACGGGAAGAGTGAAAGAGAACAAGTg
s gorGor5.CYUI01015250v1    6116743 35 +   6154872 aaggaaagaatgtgaagagtgAAAGAGAACAAGTg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30206030 35 + 172585720 gaggaaggaatgggaagagtgAAAGAGAACAAGTg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29870126 35 - 170955103 gaggaaggaatgggaagagtgAAAGAGAACAAGTg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     763460 35 +    766320 GAGGAAAGAATGGGAAGAGTGAAAGAGAACAAGTg
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29244147 35 -  71996105 gaggaaagaatgggaagagtgAAAGAGAACAAGTg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      51292 35 +    273075 gaggaaagaatgggaagagtgAAAGAGAACAAGTg
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2975075 35 -   3067355 GAGGAAGGAATGGGAAGAGTGAAAGAGAACAAGTg
i colAng1.NW_012115566v1   C 0 C 0
s saiBol1.JH378341            42061 35 +    515838 gaggaaggaatgggaagggcgaaagagaacaagtg
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e cebCap1.NW_016107755v1     427759  1 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panPan2.chr6             30199025 116 + 173848474 I
e panTro5.chr6             29965342 116 + 175400573 I

a score=736305.000000
s hg38.chr6_GL000254v2_alt  1112266 349 +   4827813 atggatgtggtgacgtcgcgttctcccgggcggggccggaggcggtacagatgagggacaca--ttcatggctaacgggaccgctcttctcgttctgcgttctgcttgcggccggtagtctctcctccccgcccatgggcggtg-gttggaggcaggggtgcggAATCCGGCCGACCTCGCTGTCCTCGCCCTCTACCTTGTGGCATCGGTGGGGTTGGGGAGATGAGTTCTCCGACGCAGTAGGCACCCCTGCTCATCTCCTATGGCTGTTGCCTTTTGGGCAGCCCCTCTTCGCGGCGGTGGGGCTGTCGCGCCGGCCTGTCACGTTGCCCTTCCCTGGGCTTGTGAGGA
s gorGor5.CYUI01015250v1    6116778 347 +   6154872 atggatgtggtgacgtcgcgttctcccgggcggggccggaggcggtacagatgagggacaca--ttcatggctaacgggaccgctcttctcgttctgcgttctgcttgcggccggtagtctctcctccccgcccatgggcggtg-gtgggaggcaggggtgcggAATCCGGCCGACCTCGCTGTCCTCGCCCTCTACCTTGTGGCGTCGATGGGGTTGGGGAGATGAGTTCTCCGACGCAGCAGGCACCCCTGCTCATCTCCTATGGCTGTTGCCTTTTGGGCAGCCCCTCTTCGCGGCGGTGGGGCTGTCCCA-CGGCCTGTCACGTTGCCCTT-CCTGGGCTTGTGAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30206065 327 + 172585720 atggatgtggtgacgtcacgttctcccgggcggggcaggatgtaccacacatgagggactga----catggctaacgtgacccctcttct-------cgttctgcctgcagcccgtagtctctcttccccgcacatgggtggtgcgtgggagacaggggtgcggAATCCGGCCGACCTCGCTGTCCCCGCCCTCTGCCTCGTGGCGTCGGTGGGGTTGGGGAGATGAGTCCT--------------ACCCCTGCTCATCTCCTGTGGCTGTTGCCTTTTGGGCAGCCCCTCTCCGCGGCAGTGGGCCTGTCCTGCTGGCCTGTGGCGCTGCCCTTCCCTGGGCCTGTGAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29870161 327 - 170955103 atggatgtggtgacgtcacgttctcccgggcggggcaggaggtaccacacatgagggactga----catggctaacgtgacccctcttct-------cgttctgcctgcagcccgtagtctctcctccccgcacatgggtggtgcgtgggagacaggggtgcggAATCCGGCCGACCTCGCTGTCCCCGCCCTCTGCCTCGTGGCGTCGGTGGGGTTGGGGAGATGAGTCCT--------------ACCCCTGCTCATCTCCTGTGGCTGTTGCCTTTTGGGCAGCCCCTCTCCGCGGCGGTGGGCCTGTCCTGCTGGCCTGTGGCGCTGCCCTTCCCTGGGCCTGTGAGGG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002711v1     763495 330 +    766320 atggatgtggtgacgtcacgttctcccgggcggggcaggaggtaccacacatgagggactgacattcatggctaacgtgacccctcttct-------tgttctgcctgcagcccatagtctctcctccctgcccatgggtgctgcgtgggagataggggtgcggAATCCGATCGACCTCGCTGTCCCCGCCCTCTGCCTCGTGGCATCGGTGGGGTTGGGGAGATGAGTCCT--------------ACCCCTGCTCATCTCCTGTGGCTGTTGCC-TTTGGGCAGCCCCTCTCCGCGGCGGAGGGACTGTCCTGCCGGCCTGTGGCGCTGCCCTTCCCTGGGTCTGTGAGGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29244182 331 -  71996105 atggatgtggtgacgtcacgttctcccgggcggagcaggaggtaccacacatgagggactgacattcatggctaacgtgacccctcttct-------cgttctgcctgcagcccatggtctctcctccctgctcatgggtgctgcgtgggagacaggggtgcggAATCCGGTCGACCTCGCTGTCCCCGCCCTCTGCCTCGTGGCGTCGGTGGGGTTGGGGAGATGAGTCCT--------------ATCGCTGCTCATCTCCCGTGGCTGTTGCCTTTTGGGCAGCCCCTCTCCGCGGCAGTGGGACTGTCCTGCTGGCCTGTGGCGCTGCCCTTCCCTGGGCCTGTGAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      51327 327 +    273075 atggatgtggtgacgtcacgttctcccgggaggggcaggaggtaccacacatgagggactga----catggctaacgtgacctctcttct-------ggttctgcctgcagcccgtagtctctcctccccgcacacgggtggtgcgtgggagacaggggtgcggAATCCGGTCGACCTCACTGTCCCCGCCCTCTGCCTCGTGGCGTCGGTAGGGTTGGGGAGATGAGTCCT--------------ACCCCTGCTCATCTCCTGTGGCTGTTGCCTTTTGGTCAGCCCCTCTCTGCAGCGGTGGGACTGTCCTGCCGGCCTGTCGCGCTGCCCTTCCCTCGGCCTGTGAGGG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2975110 327 -   3067355 atggatgtggtgacgtcacgttctcctgggcggggcaggaggtacctcacatgagggactga----catggctaatgtgaccattcttct-------cgttctgcctgcagcccgtagtgtctcctccctgcccatgggtggtgcgtgggagacaggggtgcggAATCCGGTCGACCTCGCTGTCCCCGCCCTCTGCCTCGTGGCATCGGTGGGGTTGGGGAGATGAGTCCT--------------ACCCCTGCTCATCTCCTGTGGCTGTTGCCTTTTGGGCAGCCCCTCTTCGCGGCGGTGGGACTGTCCTGCCGGCCTGTGGCGCTGCCCTTCCCTGGGCCTGTGAGGG
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42096   0 +    515838 C
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019  14 -    383796 I
e cebCap1.NW_016107755v1     427759   1 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panPan2.chr6             30199025 116 + 173848474 I
e panTro5.chr6             29965342 116 + 175400573 I

a score=470840.000000
s hg38.chr6_GL000254v2_alt  1112615 160 +   4827813 TTGGCTCCGCTTGGACCTTTGCGGTGCTCCCGGAGCCCTCCAGGTTGTCCCTCCGGTGCCGGAGGCCAAGCGGTGGTGTCCTTCCTGTTCCCAGCGCCCCCTCCTCCTGTCGCTGCTGCAGTGCCTGTGTGTGGGTCCTGAGGGGTTTTGGGGAGGTAGA
s gorGor5.CYUI01015250v1    6117125 160 +   6154872 TTGGCTCCGCTTGGACCTTTGCGGTGCTCCCGGAGCCCTCCAGGTTGTCCCTCCGGTGCCCGAGGCCAAGCGGTGGTGTCCTTCCTGTTCCCAGCGCCCCCTCCTCCTGTCGCTGCTGCAGTGCCTGTGTGTGGGTCCTGAGGGGTTTTGGGGAGGTAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30206392 160 + 172585720 TTGGCTCTGCCTGGACCTTTGCTGTACTCCCGGAGCCCTCCAGGTGGTCCTTCAGGTGCCCGAGGCCAAGCGGTGGTGTCCTTCCTGTTCCCAGGGCCCTCTTCTCCAGTCGCCCCTGCAGTGCCTGCGTGTGGGTCCTGAGGAGTTTTGGTGAGGTAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29870488 160 - 170955103 TTGGCTCTGCCTGGACCTTTGCTGTGCTCCCGGAGCCCTCCAGGTTGTCCTTCAGGTGCCCGAGGCCAAGCGGTGGTGTCCTTCCTGTTCCCAGGGCCCTCTTCTCCAGTCGCCGCTGCAGTGCCTGCGTGTGGGTCCTGAGGAGTTTTGGTGAGGTAGA
i macFas5.chr4             C 0 I 645
s cerAty1.NW_012002711v1     763825 159 +    766320 TTGGCTCCGCCTGGACCTTTGCTGTGCTCCCGGAGCCCTCCAGGT-GTCCTTCAGGTGCCCGAGGCCAAGCGGTGGTGTCCTTCCTGTTCCCAGGGCCCTCTTCTCCAGTCGCCGCTGCAGTGCCTGCGTGTGGGTCCTGAGGAGTTTTGGTGAGGTAGA
i cerAty1.NW_012002711v1   C 0 C 0
s chlSab2.chr17            29244513 160 -  71996105 TTGGCTCCGCCTGGACCTTTGCTGTGCTCCTGGAGCCCTCCAGGTGGTCCTTCAGGTGCCCGAGGCCAAGCGGTGGTGTCCTTCCTGTTCCCAGCGCCCTCTTCTCCAGTCGCCGCTGCAGTGCCTGCGTGTGGGTCCTGAGGAGTTTTGGTGAGGGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      51654 160 +    273075 TTGGCTCTGTCTGGACCTTTGCTGTGCTCCCGGAGCCCTCCAGGTGGTCCTTCAGGTGCCTGAGGCCAAGTGATGGTGTCCTTTCTGTTTACAGCGCCCTCTTCTCCAGTCGCCGCTGCAGTGCTTGCGTGTGGGTCCTGAGGAGTTTTGGTGAGGTAGA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2975437 160 -   3067355 TTGGCTCTGCCTGGACCTTTGCTGTGCTCCCGGAGCCCTCCAGGTTGTCATTCAGGTGCCCGAGGCCAAGTGGTGGTGTTCTTTCTGTTTCCAGCGCCCTCTTCTCCAGTCGCGGCTGCAGTGCCTGCGTGTGGGTCCTGAGGAGTTTTGGTGAGGTAGA
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     427760 160 -   1771730 TTGGCTCTGCCTGGACCTTTGCGGTGCTCCTGGGGCCCTCCAGGTTGTCCCTGAGGTGCTGCAGGACAAGCAGGGGTGTCCTTCCTGTTCCCAGCACTCCCTCCTCCTGTCATTGCTGTGGTGCCTGCATGTGGGTCCTGAAGAGTTTTGGGGAGGTGGA
i cebCap1.NW_016107755v1   I 1 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42096   0 +    515838 C
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019  14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panPan2.chr6             30199025 116 + 173848474 I
e panTro5.chr6             29965342 116 + 175400573 I

a score=2548.000000
s hg38.chr6_GL000254v2_alt  1112775 1 +   4827813 A
s gorGor5.CYUI01015250v1    6117285 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30206552 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002711v1     763984 1 +    766320 A
i cerAty1.NW_012002711v1   C 0 n 0
s chlSab2.chr17            29244673 1 -  71996105 A
i chlSab2.chr17            C 0 I 87276
s manLeu1.NW_012101121v1      51814 1 +    273075 A
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2975597 1 -   3067355 A
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     427920 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42096 0 +    515838 C
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29870648 645 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panPan2.chr6             30199025 116 + 173848474 I
e panTro5.chr6             29965342 116 + 175400573 I

a score=1365.000000
s hg38.chr6_GL000254v2_alt  1112776 1 +   4827813 T
s gorGor5.CYUI01015250v1    6117286 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30206553 1 + 172585720 T
i rheMac8.chr4             C 0 N 0
s manLeu1.NW_012101121v1      51815 1 +    273075 T
i manLeu1.NW_012101121v1   C 0 I 49228
s colAng1.NW_012115566v1    2975598 1 -   3067355 T
i colAng1.NW_012115566v1   C 0 T 41662
s cebCap1.NW_016107755v1     427921 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42096 0 +    515838 C
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e chlSab2.chr17            29244674 87276 -  71996105 I
e cerAty1.NW_012002711v1     763985 0 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29870648 645 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panPan2.chr6             30199025 116 + 173848474 I
e panTro5.chr6             29965342 116 + 175400573 I

a score=-15.000000
s hg38.chr6_GL000254v2_alt  1112777 3 +   4827813 ATT-
s gorGor5.CYUI01015250v1    6117287 3 +   6154872 ATT-
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29871293 3 - 170955103 att-
i macFas5.chr4             I 645 C 0
s cebCap1.NW_016107755v1     427922 3 -   1771730 -TTT
i cebCap1.NW_016107755v1   C 0 I 37
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42096 0 +    515838 C
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e chlSab2.chr17            29244674 87276 -  71996105 I
e cerAty1.NW_012002711v1     763985 0 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panPan2.chr6             30199025 116 + 173848474 I
e panTro5.chr6             29965342 116 + 175400573 I

a score=6088.000000
s hg38.chr6_GL000254v2_alt  1112780 31 +   4827813 TTTATTTATTTAAATAAATTAAAAAATAAGA
s gorGor5.CYUI01015250v1    6117290 31 +   6154872 TTTATTTATTTAAATAAATTAAAAAATAAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29871296 31 - 170955103 tttatttatttatttaaatttaaaatttaaa
i macFas5.chr4             C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42096  0 +    515838 C
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e cebCap1.NW_016107755v1     427925 37 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e chlSab2.chr17            29244674 87276 -  71996105 I
e cerAty1.NW_012002711v1     763985  0 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panPan2.chr6             30199025 116 + 173848474 I
e panTro5.chr6             29965342 116 + 175400573 I

a score=103.000000
s hg38.chr6_GL000254v2_alt  1112811 4 +   4827813 AAAA-
s gorGor5.CYUI01015250v1    6117321 4 +   6154872 AAAA-
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29871327 4 - 170955103 taaa-
i macFas5.chr4             C 0 I 796
s cebCap1.NW_016107755v1     427962 4 -   1771730 -AAAG
i cebCap1.NW_016107755v1   I 37 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42096 0 +    515838 C
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e chlSab2.chr17            29244674 87276 -  71996105 I
e cerAty1.NW_012002711v1     763985 0 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panPan2.chr6             30199025 116 + 173848474 I
e panTro5.chr6             29965342 116 + 175400573 I

a score=4519.000000
s hg38.chr6_GL000254v2_alt  1112815 25 +   4827813 AATACAAAAAGAAAGAGAACAAGTA
s gorGor5.CYUI01015250v1    6117325 24 +   6154872 AATAC-AAAAGAAAGAGAACAAGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s cebCap1.NW_016107755v1     427966 25 -   1771730 AACACAAAAGCAAGGAGAGCAAGTA
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42096  0 +    515838 C
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e chlSab2.chr17            29244674 87276 -  71996105 I
e cerAty1.NW_012002711v1     763985  0 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panPan2.chr6             30199025 116 + 173848474 I
e panTro5.chr6             29965342 116 + 175400573 I

a score=30523.000000
s hg38.chr6_GL000254v2_alt  1112840 107 +   4827813 ATCTTAACTATTGATT----CCAccatcgtgcagtgcaatagtcaatggctgcaactgaaaaatcaagcaa----------------------------tgttaataaagaaatggtgctttggtgcttagatatgtga
s gorGor5.CYUI01015250v1    6117349 107 +   6154872 ATCTTAACTATTGATT----CCACCATCGTGCAGTGcaatagtcaacggctgcaactgaaaaatcaagcaa----------------------------tgttaataaagaaatggtgctttggtgcttagatatgtga
i gorGor5.CYUI01015250v1   C 0 C 0
s saiBol1.JH378341            42096 126 +    515838 ctct-aactattgcattcgcccaccactgtgctgtgcaa----caatggctgtaactgaaaaaacaaaacaaaacaaaacaaaacaaaaacacacacagtattaataaacaaa--------tggtacttagagatatgg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     427991  99 -   1771730 CTCTGAACTACTGACT----CCACCACTGTGCTGTGcaacagtcagtggctgcaactgaaaactcaagcca----------------------------tgttaataaagaaa--------tgggactgagatatgcgg
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019  14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e chlSab2.chr17            29244674 87276 -  71996105 I
e cerAty1.NW_012002711v1     763985   0 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panPan2.chr6             30199025 116 + 173848474 I
e panTro5.chr6             29965342 116 + 175400573 I

a score=110642.000000
s hg38.chr6_GL000254v2_alt  1112947 134 +   4827813 aagtaaagtcaaaagaatcagctgaaa--cttgaaagtggttgctccctagaaaggcagaaatagagaagagaggactctccctagaaaggcagagaagactctcatttttctcagaaagtcctgcacaaatattt
s panTro5.chr6             29965458 118 + 175400573 aagtaaagtcaaaagaatcagctaaaaaacttgaaagtggttggcccctagaaaggcagaaattgagaagag------------------gcagaaaggactctcatttttctcaagagattctgcacaaatattt
i panTro5.chr6             I 116 I 1
s panPan2.chr6             30199141 118 + 173848474 aagtaaagtcaaaagaatcagctaaaaaacttgaaagtggttggcccctagaaaggcagaaattgagaagag------------------gcagaaaggactctcatttttctcaagagattctgcacaaatattt
i panPan2.chr6             I 116 I 1
s gorGor5.CYUI01015250v1    6117456 134 +   6154872 aagcaaagtcaaaagaatcagctgaaa--cttgaaagtggttgctccctagaaaggcagaaatagagaagagaggactctccctagaaaggcagagaagactctcatttttctcagaaagtcctgcgcaaatattt
i gorGor5.CYUI01015250v1   C 0 C 0
s saiBol1.JH378341            42222 118 +    515838 agatcaagtcaaaaaaatcagctaagaatgttgaaagtggttgcttcctagaaaagtagaaattgataaga-------------a-----gcagagaaggcgcttatttttctcaagcaatcctatgcaaatattt
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     428090 130 -   1771730 a-agaaagtcagaagaatcgcctgaaactgttgaaagtgattgctccctagaaagggagaaatagagaagagaggactctcccta-----ggaaggcagaggctgatttttctcaggaagttctgcacaaatattt
i cebCap1.NW_016107755v1   C 0 I 1
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019  14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e chlSab2.chr17            29244674 87276 -  71996105 I
e cerAty1.NW_012002711v1     763985   0 +    766320 I
e macNem1.NW_012012100v1     164416 50960 +   1495729 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=136426.000000
s hg38.chr6_GL000254v2_alt  1113081 86 +   4827813 actctttccattatgtgcaattgtaacttcgaataaaataaaaACAAAAGCTTCAGTTAACATGCAAGTTTATGCCTAATGACAAC
s panTro5.chr6             29965577 86 + 175400573 actctttcaattgtgcacaattataaatttgattaaaataaaaACAAAAGCTTCAGTGAATATGCAAGTTTATGTCTAATGACAAC
i panTro5.chr6             I 1 I 39
s panPan2.chr6             30199260 86 + 173848474 actctttcaattgtgcacaattataaatttgattaacataaaaACAAAAGCTTCAGTGAATATGCAAGTTTATGTCTAATGACAAC
i panPan2.chr6             I 1 I 39
s gorGor5.CYUI01015250v1    6117590 86 +   6154872 actctttcaattatgtgcaattgtaacttcgaataaaataaaaACAAAAGCTTCAGTTAACATGCAAGTTTATGCCTAATGACAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012012100v1     215376 86 +   1495729 actctttcaattatggacaattgtaaatttcattaaaataaaaGCAAAACCTTCAATGAATATGCAAGTTTATGCCTAATGACAAC
i macNem1.NW_012012100v1   I 50960 C 0
s saiBol1.JH378341            42341 86 +    515838 actctttcaattatgaacaattataaatttgattaaaataaaaGCAAAAACTTCAATGAATATGCAAGTTTATGCCTAATGACAAC
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     428221 86 -   1771730 actctttcaattttgtgcagttgtaactttgagtaaaataaaaACAAAAGCTTCAGTTAACATGCAAGTTTCTGGCCAATGACAAC
i cebCap1.NW_016107755v1   I 1 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e chlSab2.chr17            29244674 87276 -  71996105 I
e cerAty1.NW_012002711v1     763985  0 +    766320 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=910.000000
s hg38.chr6_GL000254v2_alt  1113167 1 +   4827813 T
s gorGor5.CYUI01015250v1    6117676 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012012100v1     215462 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 I 217
s saiBol1.JH378341            42427 1 +    515838 T
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     428307 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e chlSab2.chr17            29244674 87276 -  71996105 I
e cerAty1.NW_012002711v1     763985 0 +    766320 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panPan2.chr6             30199346 39 + 173848474 I
e panTro5.chr6             29965663 39 + 175400573 I

a score=12418.000000
s hg38.chr6_GL000254v2_alt  1113168 32 +   4827813 TTGTTTAACAATGATAAAGGGCTAACCAAAAT
s gorGor5.CYUI01015250v1    6117677 32 +   6154872 TTGTTTAACAATGATAAAGGGCTAACCAAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s saiBol1.JH378341            42428 31 +    515838 GTATTCTGCAATGATATA-GGTTAACTAAAAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     428308 32 -   1771730 TTGTTTAACAATGATAAAGGGTTAACCAAAAT
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e chlSab2.chr17            29244674 87276 -  71996105 I
e cerAty1.NW_012002711v1     763985  0 +    766320 I
e macNem1.NW_012012100v1     215463 217 +   1495729 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panPan2.chr6             30199346 39 + 173848474 I
e panTro5.chr6             29965663 39 + 175400573 I

a score=546.000000
s hg38.chr6_GL000254v2_alt  1113200 2 +   4827813 AT
s gorGor5.CYUI01015250v1    6117709 2 +   6154872 AT
i gorGor5.CYUI01015250v1   C 0 C 0
s cebCap1.NW_016107755v1     428340 2 -   1771730 AT
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42459 0 +    515838 C
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e chlSab2.chr17            29244674 87276 -  71996105 I
e cerAty1.NW_012002711v1     763985 0 +    766320 I
e macNem1.NW_012012100v1     215463 217 +   1495729 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panPan2.chr6             30199346 39 + 173848474 I
e panTro5.chr6             29965663 39 + 175400573 I

a score=0.000000
s hg38.chr6_GL000254v2_alt  1113202 320 +   4827813 AAAAACACTTAAACATgtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagatcgagaccatcctggctaacaaggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaagcggagcttgcagtgagccgagattgcgccactgcagtccgcagtccgacctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaa
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42459   0 +    515838 C
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019  14 -    383796 I
e cebCap1.NW_016107755v1     428342   0 -   1771730 C
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e chlSab2.chr17            29244674 87276 -  71996105 I
e cerAty1.NW_012002711v1     763985   0 +    766320 I
e macNem1.NW_012012100v1     215463 217 +   1495729 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e gorGor5.CYUI01015250v1    6117711   0 +   6154872 C
e panPan2.chr6             30199346  39 + 173848474 I
e panTro5.chr6             29965663  39 + 175400573 I

a score=91.000000
s hg38.chr6_GL000254v2_alt  1113522 1 +   4827813 a
s saiBol1.JH378341            42459 1 +    515838 A
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e cebCap1.NW_016107755v1     428342 0 -   1771730 C
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e chlSab2.chr17            29244674 87276 -  71996105 I
e cerAty1.NW_012002711v1     763985 0 +    766320 I
e macNem1.NW_012012100v1     215463 217 +   1495729 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e gorGor5.CYUI01015250v1    6117711 0 +   6154872 C
e panPan2.chr6             30199346 39 + 173848474 I
e panTro5.chr6             29965663 39 + 175400573 I

a score=546.000000
s hg38.chr6_GL000254v2_alt  1113523 1 +   4827813 a
s gorGor5.CYUI01015250v1    6117711 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s saiBol1.JH378341            42460 1 +    515838 A
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     428342 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e chlSab2.chr17            29244674 87276 -  71996105 I
e cerAty1.NW_012002711v1     763985 0 +    766320 I
e macNem1.NW_012012100v1     215463 217 +   1495729 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panPan2.chr6             30199346 39 + 173848474 I
e panTro5.chr6             29965663 39 + 175400573 I

a score=5903.000000
s hg38.chr6_GL000254v2_alt  1113524 5 +   4827813 aaaaC
s panTro5.chr6             29965702 5 + 175400573 AAAAT
i panTro5.chr6             I 39 C 0
s panPan2.chr6             30199385 5 + 173848474 AAAAT
i panPan2.chr6             I 39 C 0
s gorGor5.CYUI01015250v1    6117712 5 +   6154872 AAAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s saiBol1.JH378341            42461 5 +    515838 AAAAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     428343 5 -   1771730 AAAAC
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e chlSab2.chr17            29244674 87276 -  71996105 I
e cerAty1.NW_012002711v1     763985 0 +    766320 I
e macNem1.NW_012012100v1     215463 217 +   1495729 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=9590.000000
s hg38.chr6_GL000254v2_alt  1113529 4 +   4827813 ACTT
s panTro5.chr6             29965707 4 + 175400573 ACTT
i panTro5.chr6             C 0 I 897
s panPan2.chr6             30199390 4 + 173848474 ACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6117717 4 +   6154872 ACTT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30513235 4 + 172585720 ACTT
i rheMac8.chr4             N 0 C 0
s chlSab2.chr17            29331950 4 -  71996105 ACTT
i chlSab2.chr17            I 87276 C 0
s saiBol1.JH378341            42466 4 +    515838 ACTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     428348 4 -   1771730 GCTT
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019 14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e cerAty1.NW_012002711v1     763985 0 +    766320 I
e macNem1.NW_012012100v1     215463 217 +   1495729 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=210592.000000
s hg38.chr6_GL000254v2_alt  1113533 168 +   4827813 AAACATAAAACAG-CATGTATAAATGTGTATGTGACATCAACCCTGAATACAAACTTGAAAGAATATGTCTATAAACAA--CTCTGGATAGATAGCCCATGAATGAATTCCCCACTCCAGCATCTTTACTGGTTGTCCTGTGAGCCTAGGCAGGGAGGGGACCAGGACCTG
s panPan2.chr6             30199394 171 + 173848474 AAACATGAAACAGGCATGTATAAATGTGTTTTTGACACCAAACGTGAACACAAATGTGAAAGAATACACCTGTAAACACATCTCTGGATAGATAGCCCACGATTGAATTCTCTACCCCACCTCCTTTACTGGTTGACCTGTGAACACAGGCAGGCAGCGGACCAGGACCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6117721 168 +   6154872 AAACATAAAACAG-CATGTATAAATGTGTATGTGACATCAACCCTGAATACAAACTTGAAAGAATATGTCTATAAACAA--CTCTGGATAGATAGCCCATGAATGAATTCCCCGCTCCAGCATCTTTACTGGTAGTCCTGTGAGCCTAGGCAGGGAGGGGACCAGGACTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30513239 170 + 172585720 AAACACAAAACACGCATGGATAAATGTGTCTGTGAAAACAAACCTGAATACAAACATGAAACCATATATCTATAAACACATCTCTGGATAGATAGCTTATGAACGAATTCCCTACCCCAGCTCCCTTACTGGTTACCCTGTGAACACAGGCAGGCAGGAAA-CAGGACCCA
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29331954 170 -  71996105 AAACATAAAACACGCATGGATAAATGTGTCTGTGACAACAAACTTGAATACAAACATGAAACAATATATCTATAAACACATCTCTGGATAGATAGCTTATGAACGAATTCCCTACCCCAGCTCCCTTACTGGTTACCCTGTGAACACAGGCAGGCAGGAAA-CAGGACCCT
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341            42470 165 +    515838 TAACATAAAATAGTCATGCATAAATGTGTATGTAACATCAACTATGAATAAAAACATGAAATAATATGTCAATAAACACATCTCTG----GTTAGCTCACAAATGAGTTCTCTACCCCATCTCCTTTACTGGTTGCCCTGTGAACTAAGGC-AGCAGGTAT-CAGGACCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     428352 168 -   1771730 AAACATAAAACAG-CACGTACAAATGTGTATGTGACATCAACCCTGAATACAAACGTGAAAGAACAAGTCTATAAACACAACTCTGGGTAGGTAGCCTATGAATGAATTCCCTACTCCAGA-ACTTTCCTGGTTGTCCTGTGAACATAGGCGGGCAGGGAC-CAGGACCCG
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     111019  14 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e cerAty1.NW_012002711v1     763985   0 +    766320 I
e macNem1.NW_012012100v1     215463 217 +   1495729 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panTro5.chr6             29965711 897 + 175400573 I

a score=25585.000000
s hg38.chr6_GL000254v2_alt  1113701 16 +   4827813 ACTAGGGTCCCTAATA
s panPan2.chr6             30199565 16 + 173848474 ACTAGGTTCCTTCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6117889 15 +   6154872 ACTAGGGTCC-TAATA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30513409 16 + 172585720 GCTAGGGTTCCTCATC
i rheMac8.chr4             C 0 I 3
s chlSab2.chr17            29332124 16 -  71996105 GCTAGGGTTCCTCATC
i chlSab2.chr17            C 0 I 3
s saiBol1.JH378341            42635 16 +    515838 ACTAAGGTCTCTCATC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     428520 16 -   1771730 ACTAGGGTCCCTCATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     111033 16 -    383796 ACTACGGTCCCTCATC
i aotNan1.NW_018496904v1   I 14 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e cerAty1.NW_012002711v1     763985  0 +    766320 I
e macNem1.NW_012012100v1     215463 217 +   1495729 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panTro5.chr6             29965711 897 + 175400573 I

a score=161729.000000
s hg38.chr6_GL000254v2_alt  1113717 64 +   4827813 CTCT---TGCTTCCAGGCAAGTCCTGCATGCACTCCTGCTGCACCAAGGGCTCCCATCCCTGCCTTG
s panPan2.chr6             30199581 64 + 173848474 CTCT---TGCTTCCAGGCAGGCCTTGCATCCACTTTTGCTGCACAGAGAGCTCCCATCCCTGCCTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6117904 64 +   6154872 CTCT---TGCTTCCAGGCAAGTCCTGCATACACTCCTGCTGCACCAAGGGCTCCCATCCCTGCCTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30513428 64 + 172585720 CTCT---TGCATCCAGGCAGGTTCTGCATCTGCTACTGCTGCACAGAGGGCTCCCATCCCTGTCTTG
i rheMac8.chr4             I 3 C 0
s macNem1.NW_012012100v1     215680 64 +   1495729 CTCT---TGCTTCCAGGCAGGTCTTGCATCCATTCCTGCTGCACAGAGGGCTCTCATCCCTGCCTTG
i macNem1.NW_012012100v1   I 217 I 99
s chlSab2.chr17            29332143 64 -  71996105 TTAT---TGCATCCAGGTAGGTCCTGCATCCACTCCTGCTGCACAGGGGGCTCCCATCCTTGCCTTG
i chlSab2.chr17            I 3 C 0
s saiBol1.JH378341            42651 67 +    515838 TTTCTGGTGTTTCCAGGCAGGTCCTGCATCCACTCCTCCTGCACAGACAGCTCTCATCCCTGCCTTG
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     428536 64 -   1771730 CTCT---TACGCCCAAGCAGGTCCTGCACCTGCTCCTGCTGCACAAAGGACTCCCATCCCTTCCTTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     111049 64 -    383796 CTCT---TGCTCCCAAGAAGGTCCTGCATCTGCTCCTGCTGCACAGAGGCCTCCCATCCCTGCCTTG
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e cerAty1.NW_012002711v1     763985  0 +    766320 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panTro5.chr6             29965711 897 + 175400573 I

a score=154867.000000
s hg38.chr6_GL000254v2_alt  1113781 113 +   4827813 GTCTGTTTCATAGGTGCTCCCCTAACTCTC--TGCCACCACTGCCTTACCTGGGTGGAGCTGAGGCCGCCCTGACCAAGAAGAGCACCAGCCATCTATGTGC-CCCAAAACCAGAA
s panPan2.chr6             30199645 113 + 173848474 GTCGGTTTCACAGGTGATCCCCTAACTCTCCCTGCCACCACTGCCTTACCTGAGTGGAGCTGAGGCTGCCCTGACCAAGAAGAGCACCACCCATCT--GTGC-CCCAAGGCCAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6117968 113 +   6154872 GTCTGTTTCATAGGTGCTCCCCTAACTGTC--TGCCACCACTGCCTTACTTGGGTGGAGCTGAGGCCGCCCTGACCAAGAAGAGCACCACCCATCTATGTGC-CCCAAAACCAGAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30513492 114 + 172585720 GTCAGTTTCACAGGTGCTCCCCTAACTCTCTCTGCCTCCACTGCTTTACCTGGGTAGAGCTGAGGCTGCCCTGACCAAGAACAGCACCACCCACCT--GTGCCCCCAAGACCAGGA
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29332207  99 -  71996105 GTCACTTTCACAGGTGCTCCCATAACTCTCTCTGCCTCCACTGCTTTACCTTGGTGGAGCTGAGGCTGCCCTGACCAAGAACAGCA-----------------CCCAAGACCAGGA
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341            42719  50 +    515838 GTCTGTTTGATAGCCCCT----------------CCACCACCACCTCACC--------------------------------GACACT----------------CTTAGA--AGGA
i saiBol1.JH378341         I 1 I 2
s cebCap1.NW_016107755v1     428600 115 -   1771730 GTCTCTTTCACAGGCGCTCCTCTAACTCTCTCTGCCACCACTGCCTTACCTGGGTGGAGCTGAGGCTGCCCTGACCAAGAAGGGCACTACCCATCTGTGTGC-CCCAAGACTAGGA
i cebCap1.NW_016107755v1   C 0 I 24
s aotNan1.NW_018496904v1     111113 115 -    383796 GTCTCTTTCACAGGCGCTCCTCTAACTCTCTCTGCCACCACTGCCTTACCTGGGCGGAGCTGAGGCTGCCCTGACCAGGAAGGGCACCACGCATCTGTGTGC-CCCAAGACCAGAC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e cerAty1.NW_012002711v1     763985   0 +    766320 I
e macNem1.NW_012012100v1     215744  99 +   1495729 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panTro5.chr6             29965711 897 + 175400573 I

a score=4628.000000
s hg38.chr6_GL000254v2_alt  1113894 4 +   4827813 AGTC
s panPan2.chr6             30199758 4 + 173848474 AGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6118081 4 +   6154872 AGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30513606 4 + 172585720 AGTT
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29332306 4 -  71996105 AGTT
i chlSab2.chr17            C 0 C 0
s aotNan1.NW_018496904v1     111228 4 -    383796 AGTT
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42769 2 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e cebCap1.NW_016107755v1     428715 24 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e cerAty1.NW_012002711v1     763985 0 +    766320 I
e macNem1.NW_012012100v1     215744 99 +   1495729 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panTro5.chr6             29965711 897 + 175400573 I

a score=53520.000000
s hg38.chr6_GL000254v2_alt  1113898 50 +   4827813 AAAAGAAACCTTGCAACAGGGTCAGGAACTATCCCACCTCCCCACC------TCCG
s panPan2.chr6             30199762 50 + 173848474 AAAAGGAACCTCACAACAGGGTCAGGAACTATCCCACCTCCCCACC------TACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6118085 50 +   6154872 AAAAGAAGCCTTGCAACAGGGTCAGGAACTATCCCACCTCCCCACC------TCCG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30513610 44 + 172585720 AGGAAGAACCACGCAACAGGGTCAGGAACTCTCCCACCTCCCCA------------
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29332310 44 -  71996105 AGGAGGAACCACGCAACAGGGTCAGGAACTCTCCCACTTCCCCA------------
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341            42771 47 +    515838 --------CCACACAACAAG-GTGGTAGCTATCTCACCTCCCCACCTCCCTTCCCC
i saiBol1.JH378341         I 2 C 0
s cebCap1.NW_016107755v1     428739 49 -   1771730 AGGAGGAACCTCGAAGCAGGTACAGGAACTATCCCCCCT-CCCACC------ACCC
i cebCap1.NW_016107755v1   I 24 C 0
s aotNan1.NW_018496904v1     111232 46 -    383796 AGGAGGAACCCC---ACAAGCTCAGGAAGTATCCCACCT-CCCACC------TCCC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e cerAty1.NW_012002711v1     763985  0 +    766320 I
e macNem1.NW_012012100v1     215744 99 +   1495729 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panTro5.chr6             29965711 897 + 175400573 I

a score=236833.000000
s hg38.chr6_GL000254v2_alt  1113948  95 +   4827813 AATCAGTCTGAACTGATGGCGGGAGATGCTGATGCTTGCTTTACTCATCCTCATTCCCTGTGCATTTATTTTTCACTAATTCAGTCCACATCTCC------------------
s panPan2.chr6             30199812  94 + 173848474 AATCAGTCTGAACTGATAATGGGAGATGCTGATACTTGCTTTACTCATCCTCATTCCCAGTTCATTTATTCTTCATTAATTCAGTCCA-ATCTCC------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6118135  95 +   6154872 AATCAGTCTGAACTGATGGCGGGAGATGCTGATGCTTGCTTTACTCATCCTCATTCCCTGTGCATTTATTTTTCACTAATTCAGTCCACATCTCC------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30513654  94 + 172585720 -GTCAGTCTGAACTGATGGCAGGAGATACTGATGCTTGCTTTACTCATCCTCATTCCCAGCTCATTTATTCTGCATTAATTCCGTTCACATGTCC------------------
i rheMac8.chr4             C 0 I 18
s macNem1.NW_012012100v1     215843  95 +   1495729 AATCAGTCTGAACTGATGGCAGAAGATGTTGATGCTTGCTTTACTCATCCAGATTCCCAGTTTATTTATTCTTCATCAATTCAGTCCACATCTCC------------------
i macNem1.NW_012012100v1   I 99 N 0
s chlSab2.chr17            29332354  93 -  71996105 -GTCAGTCTGAACTGATGGCAGGAGATACTGATGCTTGCTTTACTCATCCtcattccttgttcatttattcttcattaattcaatcCA-ATCTCC------------------
i chlSab2.chr17            C 0 I 18
s saiBol1.JH378341            42818 113 +    515838 AATCAGTCTGCACAGATGGCAGAAGATGTTGACGCTTGCTTTACTCATCCAGATTTCCAGTTAATTTATTCTTCATCAATTCAGGCCACATCTCCCCAGCACTTACTTCACTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     428788  96 -   1771730 AGTCAGTTTGAACTGATGGCAGGAGATGCTGATGCTTGCTTTACTCATCCACATCCCCAGCTCATTTATTATTCATTAATTCAGTCCACATCTCC-----------------C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     111278  97 -    383796 AGTCAGTCTGAACTGATGGCGGGAGATGCTGATGATTGCTTTACTCATCCACATTCCCAGGGCATTGATTCTTCATTAATTCAGTCCACATCTCCC----------------C
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2975599 41662 -   3067355 T
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e cerAty1.NW_012002711v1     763985   0 +    766320 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panTro5.chr6             29965711 897 + 175400573 I

a score=27287.000000
s hg38.chr6_GL000254v2_alt  1114043 17 +   4827813 T------------------AGAAGCAGACTGACCC
s panPan2.chr6             30199906 35 + 173848474 CCAGTGGTCACTTAACCCCAGAAGCAGACTGATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6118230 17 +   6154872 T------------------AGAAGCAGACTGACCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30513766 15 + 172585720 ------------------CAGAAGC--ACTGACCT
i rheMac8.chr4             I 18 C 0
s chlSab2.chr17            29332465 15 -  71996105 ------------------AAGAAGC--ACTGACCT
i chlSab2.chr17            I 18 C 0
s colAng1.NW_012115566v1    2933937 17 -   3067355 ------------------CAGAAGCTGACTGACCT
i colAng1.NW_012115566v1   T 41662 C 0
s saiBol1.JH378341            42931 17 +    515838 ------------------CAGAAGCAGACTGACCC
i saiBol1.JH378341         C 0 I 20172
s cebCap1.NW_016107755v1     428884 17 -   1771730 ------------------CAGAAGCAGACCGATCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     111375 17 -    383796 ------------------TAGAAGCAGACTGAACC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e cerAty1.NW_012002711v1     763985  0 +    766320 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panTro5.chr6             29965711 897 + 175400573 I

a score=140419.000000
s hg38.chr6_GL000254v2_alt  1114060 76 +   4827813 CTACCCTTCATAATCAGGAAACCCCAGAGCACTTTTTATCCCCTCCAGAATATAACACTTCAGCTCTGCATCATCA
s panPan2.chr6             30199941 76 + 173848474 CTATTCTTCTTAATCAGGAAAGTCCAAAGCACTCCCTGTCCTCTCCCTCATATCAGACTTCAGCTCTGCATCTGCA
i panPan2.chr6             C 0 I 14
s gorGor5.CYUI01015250v1    6118247 76 +   6154872 CTACCCTTCATAATCAGGAAACCCCAGAGCACTTTTTATCCCCTCCAGAATATAACACTTCAGCTCTGCATCATCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30513781 75 + 172585720 CTACTCTTCATAATCAGGAAACCCCAAAGCACTCTCTGTCACCTCCCGGATATCA-TCTTCAGCTCTACATCATCA
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29332480 75 -  71996105 CTACTCTTCATAATCAGGAAACCGCAAAGCACTCTCCGTCACCTCCCTGATACCA-TCTTCAGCTCTACATCATCA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2933954 76 -   3067355 CTAATCTTTGTAATCAGGAAACCACAAAGCACTCTCTGTCACCTCCCTGATATCACCCTTCAGCTCTACGTCATCA
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     428901 76 -   1771730 CTACTCTTCATAATCAGAAAACCCCAGAGCACTTTTTGTCCCCTCTGGAATATCACACTTCAGCTCTGCATTGTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     111392 76 -    383796 CTACTCTTCATAATCAGAAAACCCCAGAGCACTTTTTGTCCCCTCTGGAATATCACACTTCAGCTCTGCCTCATCA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e cerAty1.NW_012002711v1     763985  0 +    766320 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panTro5.chr6             29965711 897 + 175400573 I

a score=21710.000000
s hg38.chr6_GL000254v2_alt  1114136 15 +   4827813 CATGAGGGCTCCAAC
s gorGor5.CYUI01015250v1    6118323 15 +   6154872 CATGAGGGCTCCAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30513856 15 + 172585720 CATGTGGGCTCCAAC
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29332555 15 -  71996105 CATGTGGGCTCTAAC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2934030 15 -   3067355 CATGTGAGCTCCAAC
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     428977 15 -   1771730 CATGAGGGCTCCATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     111468 15 -    383796 CATGAGGGTACAAAC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e cerAty1.NW_012002711v1     763985  0 +    766320 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panPan2.chr6             30200017 14 + 173848474 I
e panTro5.chr6             29965711 897 + 175400573 I

a score=146886.000000
s hg38.chr6_GL000254v2_alt  1114151 84 +   4827813 TCTGTAGGGCAGGTGTACTCTCACAGCTTCAGGCCCTGAACATTTGCTTCAGATGT-CCCCCC-ATCCCTTTCCAGACCTGTCTGT
s panPan2.chr6             30200031 84 + 173848474 TCTGCAAGGCAGGTGTCCTCCCACAGGGTCAGCCCCTGAACACTGGCTGCAGATGT-CCCCCC-ATCCCTTCCCAGCCCTTTCTGT
i panPan2.chr6             I 14 C 0
s gorGor5.CYUI01015250v1    6118338 84 +   6154872 TCTGTAGGGCAGGTGTACTCTCACAGCTTCAGGCCCTGAACATTTGCTTCAGATGT-CCCCCC-ATCCCTTCCCAGACCTGTCTGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30513871 83 + 172585720 TCTGCAGGGCAGATGTTCCCCGACATGGTCAACCCCTGAACATTGGCCCCAGATGT--CCCCC-ATCCCTTCTCAGCCCTTTCGGT
i rheMac8.chr4             C 0 T 66614
s chlSab2.chr17            29332570 82 -  71996105 TCTGCAGGGCAGATGTTCCCC-ATAGGTTCAGCCCCTGAACACTGGCCCCAGATGT--CCCCC-ATCTCTTCCCAGCCCTTTCAGT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2934045 84 -   3067355 TCTGCAGGGCAGGTGTCCCCC-ACAGGGTCAGCCCCTAAACATTGGCCCCAGATGTTCCCCCC-ATCCCTTTCCAGCCCTTTCGGT
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     428992 83 -   1771730 TCTGCAGGGCAGGTGTCGCCC-ACAGGGTCAGCCCATGAACATTTGCCGCAGATGT-CCCCCC-ATCCCTTCCCAGGCTTCTGGGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     111483 83 -    383796 TCTGCAGGGCAGGTGTCCCCC-ACAGGGTCAGCCC-TGAACATTTGCTGCAGATGT-CCCCCCAATCCCTTCCCAGGCCTGTCAGT
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1      51816 49228 +    273075 I
e cerAty1.NW_012002711v1     763985  0 +    766320 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panTro5.chr6             29965711 897 + 175400573 I

a score=43764.000000
s hg38.chr6_GL000254v2_alt  1114235 13 +   4827813 GTTGCTCTGAATC
s panPan2.chr6             30200115 13 + 173848474 GTTGCTGTGAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6118422 13 +   6154872 GTTGCTCTGAATC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30447340 13 + 172585720 GTTGCTGTGAATC
i rheMac8.chr4             T 66614 C 0
s cerAty1.NW_012002535v1     105897 13 -    863181 GTTGCTATGAATC
i cerAty1.NW_012002535v1   I 79028 C 0
s chlSab2.chr17            29332652 13 -  71996105 GTTGCTGTGAATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     101044 13 +    273075 GTTGCTGTGAATC
i manLeu1.NW_012101121v1   I 49228 C 0
s colAng1.NW_012115566v1    2934129 13 -   3067355 GCTGCTGTGAATC
i colAng1.NW_012115566v1   C 0 M 731
s cebCap1.NW_016107755v1     429075 13 -   1771730 ATTACTGTGAAGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     111566 13 -    383796 GTTATTGTGAATC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panTro5.chr6             29965711 897 + 175400573 I

a score=437286.000000
s hg38.chr6_GL000254v2_alt  1114248 160 +   4827813 TGTCCTTCCCTGAGAACTGGCGGGGAGATATCAGGGAGGAGGGGAGATTTCTTTGTGCTATGTCAACGCATCTAGACAGAGCTCTCATTCTCCCTTGAACCTCA-ACTCTATCTGTTCCCAGACACTTGAAATAAAACACAGACCAGAAATGTCTATTTAA
s panPan2.chr6             30200128 161 + 173848474 TGTCCGTCACTGAGAACTGACGGGGAGATGTGGGGGAGGAGGGGAGATTTCTTGGTGCTGTGTCAAGGCATCAAGACAGATCTCTCCTTCTCTCTTGAACCTCACACTCTATCCCTTCCCAGACACTTGAAATAAAACACAGACCAGAAATGTCTACTTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6118435 160 +   6154872 TGTCCTTCCCTGAGAACTGGCGGGGAGATATCAGGGAGGAGGGGATATTTCTTTGTGCTATGTCAATGCATCTAGACAGAGCTCTCATTCTCCCTTGAACCTCA-ACTCTATCCGTTCCCAGACACTTGAAATAAAACACAGACCAGAAATGTCTATTTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30447353 160 + 172585720 TGTCCCTCACTGAGAACTGACAGAGCGATGTGGGCGAGG-GGGGTGATTTCTCTGTGCTGTGTCAAGGCATCAAGACAGACCTCTCCTTCTCTCCTGAACCTCACACTCTATCCCTTCCCAGACACTTGAATTAAAACACAGACCAAAAATGTCTGTTTAA
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     105910 161 -    863181 TGTCCCTCACTGAGAACTGGCAGGGTGATGTGCGGGAGGAGGGGAGATTTCTTTGTGCTGTGTCAAGGCATCAAGGCAGACCTCTCCTTCTCTCCTGAACCTCACACTCTATCCCTTCCCAGACACTTGAATTAAAACACAGACCAGAAATGTCTGTTTAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29332665 161 -  71996105 TGTCCCTCACTGAGAACTGGTGGGGAGATGTTGGGGAGGAGGGGAGATTTCTCTGTGCTGTGTCAAGGCATCAAGACAGACCTCTCCTTCTCTCCTGAACCTCACACTCTATCCCTTCCCAGACACTTGAAATAAAACGCAGACCAGAAATGTCTATTTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     101057 160 +    273075 TGTCCCTCACTGAGAACTGACAGGGCGATGTAGGGGAGGAGGGGAGATTTCTTTGTGCTGTGTCAAGGCATCGAGACAGACCTCTCCTTCTCTCCTGAACCTCACACTCTATCCCTTCCCAGACACTTGAATTAAAACACAGA-CAGAAATGTCTGTTTAA
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     429088 160 -   1771730 TCTCCCTCACTGACAACTGGCGGGGAGATGTCAGGGAGGAGAGCAGATTTCTTTGTGCTGTGTCAAGGCATCAAGACAGACCTCTCCTTCATCCCTGAACCTCA-ACTCTGTTCCTTCCCAGACACTTGAAATAAAACTCAGACCAGAAATGTCTATTTAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     111579 160 -    383796 TGTCCCTCACTGAGAACTGGTGGGGAAATGTCAGAGGGGAGGGGAGATTTCTTTGTGCTGTGTCAAGGCATCAAGACAGACCTCTCCTTCTCCCCTGAACCTCA-ACTCTCTTTCTTCTGAGACGCTTGAAATGAAACACAGACCAGAAATGTCTATTTAA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2934142 731 -   3067355 M
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panTro5.chr6             29965711 897 + 175400573 I

a score=527376.000000
s hg38.chr6_GL000254v2_alt  1114408 164 +   4827813 AAGCTAAATATCTATAGTATAAAAT-ATGAAGACAGAGTAGA-ATGGGGTAATGCAGGAGAGTGTGACA-GGGCGAGGGGACCTCAACGTGCCAGGAAAGTTGGTCCTTGGCTCCCCGGA-GGAGCCGTCACCAGGACACTCACTCATAAAGCTCACCTGTGATAATA
s panTro5.chr6             29966608 167 + 175400573 AGGGTAAATTTCTATAGTATAAAATTATGAAGACATAGTAGATATGAGGTAATGCATGAGAGTGTGACA-GGGTGAGGGGACCTCAAGGTGCCAGGAAAGCTGGTCCTGGGCTCCCCAGAAGGAGCCGTAACCAGGACACTCACTCATAAATCTCATTTataataata
i panTro5.chr6             I 897 I 18
s panPan2.chr6             30200289 167 + 173848474 AGGGTAAATTTCTATAGTATAAAATTATGAAGACATAGTAGATATGAGGTAATGCATGAGAGTGTGACA-GGGTGAGGGGACCTCAAGGTGCCAGGAAAGCTGGTCCTGGGCTCCCCAGAAGGAGCCGTAACCAGGACACTCACTCATAAATCTCATTTATAATAATA
i panPan2.chr6             C 0 I 18
s gorGor5.CYUI01015250v1    6118595 165 +   6154872 AAGCTAAATATCTATAGTATAAAAT-ATGAAGACAGAGTAGA-ATGGGGTAATGCAGGAGAGTGTGACA-GGGCGAGGGGACCTCAACGTGCCAGGAAAGTTGGTCCTTGGCTCCCCTGGAGGAGCCGTCACCAGGACACTGACTCATAAAGCTCACCTGTGataata
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30447513 159 + 172585720 GAACTAAATATCAATAGCATAAAAT-ATGAAGACAGAGTAGA-ATGGGG-------TGAGAGTGTAACAGGGGTGATAGGACCTCAAGGTGCCAGGGAAGCTGGTCCTGGGCTCCCCAGGAAGAGCCATCACCAGGACACTCACTCATAAAGGTCACCTATAATAATG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     106071 166 -    863181 GAACTAAATATCAATAGTATAAAAT-ATAAAGATAGAGTAGA-ATGGGGTAATTCATGAGAGTGTAACAAGGGTGATAGGACCTCAAGGTGCCAGGAAAGCTGGTCCTGGGCTCCCCAGGAAGAGCCGTCACCAGGACACTCACTCATAAAGGTCACCTATAATAATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29332826 165 -  71996105 GAGCTAAATATCTATAGTATAAAAT-ATGAAGACAGAGTAGA-ATAGGGTAATGCAGGAGAGTAGAACAGGGGTGAGGGGACCTCAAGGTGCCAGGAAAGCTGGTCCT-GGCTCCCCAGGAGGAACCGTCACCAGGAAACTCACTCATAAAGCTCACCTATAATAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     101217 166 +    273075 GAACTAAATATCAATAGCATAAAAT-ATGAAGACAGAGTAGA-ATGGGGTAATGCATGAGAGTGTAACAGGGGTGATAGGACCTCAAGGTGCCAGGAAAGCCGGTCCTGGGCTCCCCAGGAAGAGCCGTCACCAGGACACTCACTCATAAAGGTCACCTATAATAATG
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     429248 162 -   1771730 AAGCTAAATATCTATAGAATAAAAT-ATAAAGACAGAGTAGA-ACGGGATAATGTATGAGAGTGTGACA-GGGCAATGGGACCTCAAGGTGCCAGGAAAGTTGGTCCTGGACTCCTCTGTAGGAGCCGTCACCAGGACACTCACTCATAAATCTCACCTGTGATG---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     111739 165 -    383796 AAGCTAAATATTTACAGTATAAAAT-ATGAAGACAAAGTAGA-ATGGGGTAATGCATGAGAGTGTGACA-GGGCAAGAGGACCTCAAGGTGCCAGGAAAGTTGGTCCTGGGCTCCCCTGGAGGAGCCGTCACCAGGACACCCACTCATAAAGCCCACCTGTGATGATT
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2934142 731 -   3067355 M
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=-3043.000000
s hg38.chr6_GL000254v2_alt  1114572 14 +   4827813 ------CAAC------------------------TACATG----------ACAT
s gorGor5.CYUI01015250v1    6118760 14 +   6154872 ------caat------------------------tacatg----------acat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30447672 14 + 172585720 ------CAAT------------------------TACTGC----------ATAT
i rheMac8.chr4             C 0 I 1
s cerAty1.NW_012002535v1     106237 14 -    863181 ------CAAT------------------------TACAGC----------ATAT
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29332991 13 -  71996105 ------CAGT------------------------TACTAC----------AC-T
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012101121v1     101383 14 +    273075 ------CAAT------------------------TACAGC----------ATAT
i manLeu1.NW_012101121v1   C 0 I 1
s cebCap1.NW_016107755v1     429410 17 -   1771730 ---GTACATA------------------------TACTGC----------AAGT
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496904v1     111904 54 -    383796 ACTGCACATGTCatgtattataatatgataaaattactgcacaattactgacat
i aotNan1.NW_018496904v1   C 0 I 1
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2934142 731 -   3067355 M
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I
e panPan2.chr6             30200456 18 + 173848474 I
e panTro5.chr6             29966775 18 + 175400573 I

a score=840670.000000
s hg38.chr6_GL000254v2_alt  1114586 261 +   4827813 TAATGTATTAAAATATAATA--------AAATCATAACAAAATAACAAAAATAATATggcacagctgcaaacacctcatatatactaacacttttcatccacccaaccacaagaaataaatgttgttacattccctatttcatagatgagaaagct-gagccagcaagagaaaaagtgctggtgagacctgggcagggcgttcaatccaggccgcctggctgcagagtgtaggtgccctcaGTAGAGCCAGTGGACCTGGGAGCTGAGAG
s panTro5.chr6             29966793 253 + 175400573 taatatattaaaatataatc--------aaat--------gataacaaaaataatGTggcacagctgcaaacacctcatatatactaacgcttttcatccacccaaccacaagaaataaatgctgttagtttccccatttcatagatgaggaaact-gaggcaccaagtgggaaagtgctggtgagacctgggcagggagttgaattctggccatctggctgcagagtGTAGCTACCCTCAGTGGAGCCAGTAGACCCAGGAGTTGACAC
i panTro5.chr6             I 18 C 0
s panPan2.chr6             30200474 253 + 173848474 TAATATATTAAAATATATTC--------AAAT--------GATAACAAAAATAATGTggcacagctgcaaacacctcatatatactaacactttccatccacccaaccacaagaaataaatgctgttagtttccccatttcatagatgaggaaact-gaggcaccaagtgggaaagtgctggtgagacctgggcagggagttgaattctggccatctggctgcagagtGTAGCTACCCTCAGTGGAGCCAGTAGACCCAGGAGTTGACAC
i panPan2.chr6             I 18 C 0
s gorGor5.CYUI01015250v1    6118774 260 +   6154872 taatgtattaaaatataata--------aaatcataacaaaataac-aaaataatatggcacagctgcaaacacctcatatatactaacacttttcatccacccaaccacaagaaataaatgctgttacattccctatttcatagatgagaaagct-gagccagcaagagaaaaagtgctggtgagacctgggcagggcgttcaatccaggctgcctggctgcagagtGTAGGTGCCCTCAGTAGAGCCAGTGGACCTGGGAGCTGAGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30447687 250 + 172585720 TAATATATCAAAATATAATA--------AAAG-----------AACAAAAATAATATggcacagctgcaaacacttcatatatactaacccttttcattcatccaaccacaataaataaatgctgttagtttccctatttcatagatgaggaaact-aaggcaccaagagggaaaatgctggtgagacccaggtagggagttgaatccaggccgcctggctgcagagtctagctgccctcaGTGGCACCAGTGGAACCAGGAGATGACAC
i rheMac8.chr4             I 1 C 0
s cerAty1.NW_012002535v1     106252 251 -    863181 CAATATATCAAAATATAATA--------AAAT-----------AACAAAAATAATATggcacagctgcaaacacctcatatacactaacccttttcattcatccaaccacaataaataaatgctatcagtttctctatttcatagatgaggaaactggaggcaccaagagggaaagtgctggtgagacccaggcagggagttgaatccaggccgcctggctgcagagtctagctgccctcaGTGGAGCCAGTGGACCCAGGAGATGACAC
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29333005 257 -  71996105 TGatatattaaaatataata--------aaataaca----aaaaacaaaaataatatggcacagctgcaaacacctcatatatgctaacccttgtcattcatccaaccacaagaaataaatgctgttaatttccccatttcatagatgaggaaact-gaggcaccaagagggaaagtgctggtgaaacccaggtagggagttgaattcaggccgcctggctgcagagtctagctgccctcaGTGGCGCCAGTGGACCCAGGAGATGACAC
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012101121v1     101398 250 +    273075 TAATATATCAAAATATAATA--------AAAT-----------AACAAAAATAATATggcacagctgcaaacacttcatatatactaacccttttcattcatccaaccacaataaataaatgctgttagtttccctatttcatagatgaggaaact-gaggcaccaagagggaaaatgctggtgagacccaggcagggagttgaatccaggccacctggctgcagagtcTAGCCGCCCTCAGTGGCACCAGTGGACCCAGGAGATGACAC
i manLeu1.NW_012101121v1   I 1 C 0
s cebCap1.NW_016107755v1     429428 260 -   1771730 TCATGTATTAAAATATGATA--------AAATCATAACAAAATAATAAAAATAACATggcacagctgcaagcacctcatagatactaaccctttctatccacccaaccacaagaaataaatgctgttactttc-ctatttcatagatgaggaaact-gaggcactaagagggaaagtgctggtgagacctgggcagggggttcaatccaggccgcccggctgcagagtGTAGGAACCCTCAGTGGAGCCAGTGGACCCAGGAGCTGACAG
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496904v1     111959 268 -    383796 tcatgtattataatataataaatataataaatcataacaaaataataaaaataataTggcacagctgcaagcacctcatatatactaaccctttccatccacccaaccacaagaaatgaatgctgttactttc-ctatctcatagatgaggaaact-gaggcaccaggagggaacatgcttgtgagacctgggcagggggttcaatcccggccacccggctgcagagtGTGGGTGCCCTCAGTGGAGCCAGTGGACCCGGGAGCCGACAG
i aotNan1.NW_018496904v1   I 1 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2934142 731 -   3067355 M
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=707241.000000
s hg38.chr6_GL000254v2_alt  1114847 188 +   4827813 CAGAGACTGAAATCCCAGCTGTGCACTGCCCTGGTG---TTCTGTCTGAGTCAGGTGTTGATCTGGGCCTTGCAGGCTCATGTGCTCTGGAGAAAAGAGAGAAAATAG-TAAGTGCTCCCCTGGGTGCACAGTGCTGCTTTTTACTCCCTGACGACTTCTCCCTCCTCAGTCAGTCCCAAATCAGATTCACC
s panTro5.chr6             29967046 191 + 175400573 CAGAGACTGAAATCCCAGCTGTGCACTGCCCTGGTGGTCTCCTGTCCCAACCGGGCGTTGATCCGGGCCTTGCAAGCTCACGTGCTCTGGAGAAAATAGAGAAACCAA-TAAATGCTCCCCTGGGTGCAGAGTGCTGCTTTTTACTCCCTGAGGATTTCTCCCTCCTCAGTCACTCCAAAATCAGATTCACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30200727 191 + 173848474 CAGAGACTGAAATCCCAGCTGTGCACTGCCCTGGTGGTCTCCTGTCCCAACCGGGCGTTGATCTGGGCCTTGCAGGCTCACGTGCTCTGGAGAAAATAGAGAAACCAA-TAAATGCTCCCCTGGGTGCAGAGTGCTGCTTTTTACTCCCTGAGGATTTCTCCCTCCTCAGTCACTCCAAAATCAGATTCACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6119034 189 +   6154872 CAGAGACTGAAATCCCAGCTGTGCACTGCCCTGGTG---TTCTGTCTGAGTCAGGTGTTGATATGGGCCTTGCAGGCTCATGTGCTCTGGAGAAAAGAGAAAAAATAGTTAAGTGCTCCCCTGGGTGCACAGTGCTGCTTTTTACTCCCTGAGGACTTCTCCCTCCTCAGTCACTCCCAAATCAGATTCACC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30447937 190 + 172585720 GAGAGACTGAAATCCCAGTTGTGCACTGCCCTGGTGGTCTCCTGTCCCAACTAGGTGTTGATCCAGGCCTTGTAGGTTCCCATGCTCTGGAGAAAAGAGAAAAA-CAG-TAAATGTTCCACTGGGTGCAGGGTGTTGCTTTTTATTCCCTGAGGGCTTCTCCCTCCTCAGTCACTCCAAAATTAGATTCACT
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     106503 189 -    863181 GGGAGACTGAAATCCCAGTTGTGCACTGCCCTGGTGGTCTCCTGTCCCAACCAGGTGTTGATCCAGGCCTTGTAGGTTCCCATGCTCTGGAGAAAAGAGAAAAA-CAG-TAAATGTTCCACTGCATGCAGGGCGCTGC-TTTTATTCCCTGAGGACTTCTCCCTCCTCAGTCACTCCAAAATTAGATTCACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29333262 190 -  71996105 GGGAGATTGAAATCCCAGTTGTGCATTGCCCTGGTGGTCTCCTGTCCCAACCAGGTGTTGATCCAGGCTTTGTAGGTTCCCATGCTCTGGAGAAAAGAGAAAAA-CAG-TAAATGTTCCACTGGGTGCAGGTCGCTGCTTTTTATTCCCTGACGACTTCTCCCTCCTCAGTCACTCCAAAATCAGATTCACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     101648 190 +    273075 GGGAGACTGAAATCCCAGTTGTGCACTGCCCTGGTGGTCTCCTGTCCCAGCCAGCTGTTGATCCGGGCCTTGTAGGTTCCCATGCTCTGGAGAAAAGAGAGAAA-CAG-TAAATGTTCCACTGGGTGCAGGGTGCTGCTTTTTATTCCCTGACGACTTCTCCCTCCTCAGTCACTCCAAAATCAGATTCACT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2934890 190 -   3067355 CAGAGACTGAGATCTCAGCTGTGCACTGCCCTGGTGGTCTCCTGTCCCAACCAGGTGTTGATCCAGGCCTTGTAGGCTCATCAGCTCTGGATTAAAGAAAGAAA-CAG-TAAATGCTCCCCTGGGTGCAGAGCGCTGCTTTTTATTCCCTGAGGACTTCTCCCTCCTCAGTCACTGCAAAATCAGATGCACC
i colAng1.NW_012115566v1   M 731 C 0
s cebCap1.NW_016107755v1     429688 173 -   1771730 CAGAGGCTGAAATCCCAGCCGTGCGGTGCCCTGGTGCTCTCCTGTCC-AGTCAGGTGTTGATCTGGGCCTTGTAGTCTCACACACTCGGGAAAA-----------GAG-TTAGTGCTCCACTGGGTGCAGA------TGTTTTATTCCCTGAGGACTTCTGCCTTCTCAGTCACTCCGAAATCAGATTCACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     112227 173 -    383796 CAGAGACTGAAACCCCAGCTGTGCGGTGCCCTGGTGCTCTCCTGTCC-AGTCGGGTGTTGATCTGGGCCTTGTAGGCTCACACACTCGGGAAAA-----------GAG-TTAGTGCTCTACTGGGTGCAGA------TGTTCTATTCCCTGAGGACTTCTGCCTTCTCAGTCACTCCGAAATCAGATTCACC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74829290 8500 + 122973662 I

a score=392473.000000
s hg38.chr6_GL000254v2_alt  1115035 84 +   4827813 CTTTCTCCGAGGGAAGATGATGTCTGCACTTTTTTCTCCCTCCCATGGCACTTTTCCCAGCCCCTGCCAGTCCCCTCCCGTGAC
s panTro5.chr6             29967237 84 + 175400573 CTTTCTCTGAGGGAAGATGATGCTCCCACATTTTTCTCCCTCCTATGGCACTTTTCCCAGCCCCTGCCAGTCCCCTCCCATGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30200918 84 + 173848474 CTTTCTCTGAGGGAAGATGATGCTCCCACATTTTTCTCCCTCCTATGGCACTTTTCCCAGCCCCTGCCAGTCCCCTCCCATGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6119223 84 +   6154872 CTTTCTCCGAGGGAAGATGACGTCTGCACTTTTTTCTCCCTCCCATGGCACTTTTCCCAGCCCCTGCCAGTCCCCTCCCGTGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74837790 83 + 122973662 CTTACGCTCAAAAAAAATAATGTCCGC-CTTAATTATCTCTCCAACCCTGTTTTTCCCTGTCCAGGCCAGTTCCCTCCCTCGAC
i nomLeu3.chr1a            I 8500 T 41852
s rheMac8.chr4             30448127 84 + 172585720 CTTTCTCTGAGTGAAGATGACGTCCCCACTTTTTTCTCCCTCCCATGGCACTTTTCCCAGCCCCTGCCAGTCCCCTCCCATGAC
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     106692 84 -    863181 CTGTCTCTGAGGGAAGATGACATCCCCACTTTTTTCTCCCTCCCATGACACTTTTCCCAGCCCCTGCCAGTCCCCTCCCATGAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29333452 84 -  71996105 CTTTCTCTGAGGGAAGATGACGTCCCCACTTTTTTCTCCCTCCCATGGCACTTTCCCCAGCCCCTGCCAGTCCCCTCCCATGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     101838 84 +    273075 CTGTCTCTGAGGGAAGATGACGTCCCCACTTTTTTCTCCCTCCCATGGCACTTTCCCCAGCCCCTGCCAGTCCCCTCCCATGAC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2935080 82 -   3067355 CTTTCTCTGAGGGAAGATGATGTCCCCAC--TTTTCTCCCTCCCATGACACTTTTCCCAGCCCCTGCCAGTCCCCTCCCATGAC
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     429861 83 -   1771730 GTTTCTCTGAGGGAAGAT-ATGTCTGTGCTTCTTTCTCCCACCCAGGGCACTTTTCCCAGCCCCTGCCAGTCCCCTCCCATGAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     112400 83 -    383796 CTTTCTCTGAGGGAAGGT-ATGTCTGTGCTTGTTTCTCCCACCCAGGGCAATTTTCCCAGCCCCTGCCAGTCCCCTCCCGTGAC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macFas5.chr4             29871331 796 - 170955103 I

a score=93185.000000
s hg38.chr6_GL000254v2_alt  1115119 24 +   4827813 TCCATCAACATCAGCCCCTGCCCT
s panTro5.chr6             29967321 24 + 175400573 TTCATGAAGATCAGCACTTGCCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30201002 24 + 173848474 TTCATGAAGATCAGCACTTGCCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6119307 23 +   6154872 TCCATCAACATCAGCCCCTG-CCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30448211 24 + 172585720 TCCATCAGCATCAGCACCTGCCCT
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     106776 24 -    863181 TCCATCAGCATCAGCACCTGCCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29333536 24 -  71996105 TCCATCAGCATCAGCACCTGCCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     101922 24 +    273075 TCTATCAGCATCAGCACCTGCCCT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2935162 24 -   3067355 TCCATCAGCATCAGCACCTGCCCT
i colAng1.NW_012115566v1   C 0 I 65
s cebCap1.NW_016107755v1     429944 24 -   1771730 TCCATCAACATCTGCCCCCACCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     112483 24 -    383796 TCCATCAACATCAGCCCCTGCCCT
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74837873 41852 + 122973662 T

a score=82911.000000
s hg38.chr6_GL000254v2_alt  1115143 31 +   4827813 GTGCCCACCAGCCACCATGCAAGGAGGAAAA
s panTro5.chr6             29967345 31 + 175400573 GTGCCCACTATGCACTCTGTAGGGTCTGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30201026 31 + 173848474 GTGCCCACTATGCACTCTGTAGGGACTGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6119330 31 +   6154872 GTGCCCACCACCCACCATGCAAGGAGGAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30448235 31 + 172585720 GTGCTCAGCACCCATCGCGCAGGGAGCGAAA
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     106800 31 -    863181 GTGCCCAGCACCCATCACGCAGGGAGTGAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29333560 31 -  71996105 GTGCCCAGCACCCATCGCGCAGGGAGTAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     101946 31 +    273075 GTGCCCAGCACCCATCGCGCAGGGAGTGAAA
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     429968 31 -   1771730 GTGCCCACCACCCACCATGCAAGGTGGAAAA
i cebCap1.NW_016107755v1   C 0 I 8
s aotNan1.NW_018496904v1     112507 31 -    383796 GTGCCCACCACCCACCATGCAAGGTGGAAAA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2935186 65 -   3067355 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74837873 41852 + 122973662 T

a score=39406.000000
s hg38.chr6_GL000254v2_alt  1115174 16 +   4827813 GAGCCCCAGGACCAAA
s panTro5.chr6             29967376 16 + 175400573 GGGCCGCAGGACTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30201057 16 + 173848474 GGGCCTCAGGACTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6119361 16 +   6154872 GAGCCCCAGGACCAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30448266 16 + 172585720 GGACCCCAGGACTAAG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     106831 16 -    863181 GGACCCCAGGACTAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29333591 16 -  71996105 GGACCCCAGGACTCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     101977 16 +    273075 GGACCCCAGGACTAAG
i manLeu1.NW_012101121v1   C 0 C 0
s aotNan1.NW_018496904v1     112538 16 -    383796 AAGCCCCAGGTCTAAA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e cebCap1.NW_016107755v1     429999  8 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2935186 65 -   3067355 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74837873 41852 + 122973662 T

a score=33980.000000
s hg38.chr6_GL000254v2_alt  1115190 16 +   4827813 GGACAAGAC-CTGGGAA-
s panTro5.chr6             29967392 17 + 175400573 TGACAAGACTCCAGAAG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30201073 17 + 173848474 TGACAAGACTCCAGAAG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6119377 16 +   6154872 GGACAAGAC-CTGGGAA-
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30448282 16 + 172585720 GAACAAGAC-CCAGGAG-
i rheMac8.chr4             C 0 I 1
s cerAty1.NW_012002535v1     106847 16 -    863181 AAACAAGAC-CCAGGAG-
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29333607 16 -  71996105 GAACAAGAC-CCAGGAG-
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012101121v1     101993 16 +    273075 AAACAAGAC-CCAGGAG-
i manLeu1.NW_012101121v1   C 0 I 1
s cebCap1.NW_016107755v1     430007 17 -   1771730 GCAGAAGAC-CTGGGAGA
i cebCap1.NW_016107755v1   I 8 C 0
s aotNan1.NW_018496904v1     112554 17 -    383796 GGACAAGAC-CTGGGAGA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2935186 65 -   3067355 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74837873 41852 + 122973662 T

a score=3455928.000000
s hg38.chr6_GL000254v2_alt  1115206 991 +   4827813 AAACCCAGTGCCCT---CCCCTCCTCTCAAGCCTGGCCAGCTCTG--ACAGCAGGAGGACTCCCCAAAGAGAGGCTCTGGCCCTGGCTCCATGTCCTTCCAGGACTGGGCTGGGTCACACGCACAGTCCTTCTCTTC-CTCAGTCCCCAGTCCCACCTCACCTGTAGAGACACCTGCACACAAAGGCAGGCCCTAAACACTGT-GGTTCTGCCCTCCACCTGCAGCTCAGTGCTCCTCCACTTCCAGCCCTGAGCAGGCAGCTCCTAACTGGGAAGCCCATTAAGAATCCCATCA-GCATGGCAGGCCCAGCATGGAAACATGTAGCTGCTATGGGGTCTGCAGCTGACCTGACCCTGGGAACCCCCTTGCTCAAGGA------GCCTACCCTGACCCCCAGGCCCATGACCTGCACTTGGGCCATG-CTTGCTCCAGCCTGGTCCACTCATCCCTGGAAGCACAGCTTCTCCCCAGGGCTGCTGCTTGGGGAGGCTGAAAGGCCTTCCTCTCCTGTTCCTAGCAGGGATTCCTAGCAGGGA-------------TTCCA------CCCAAGCCACTGCCCTCACAGCCCATAGGGGA---TCTTCTTCTCCCTGTGGAGTAGAAAGTTTCTTGAGACCCCTCAGCCTGAGGCTGCCTCTGCCCACCCTTTGCACTTGGGGATTGCCACTGCCACAGCCACTGTCTCCCACATGGACCGTCCTGGAGAGGGAGCTCCACATTTGAGTTCCTGTTTCATTTGATATAGGTTACAACATTAGTATTGGTGGAAATCCTTTTAAG---ACCCAGCTGAAACTACGAACATCTTTATTGGACATCAGCATTTAAAGCAGGAATTTTGAGAAATTAGCACATAACTTTCACACCCCTTTCCTGGCCAGTGCCCCAGTAACCTACAAGGCAACCGTTCCCGCCCACGGGGAACCAGAACTGACAATCCCTCTTCAGGAGACACCACAGGTGAGAGCAGGAGCGACCACAGACCTGCACT-GCCCCTGCTGTGGGTGCC
s panTro5.chr6             29967409 982 + 175400573 AAACTCAGTGCCCT---CCCCTCCTCTCAAGCCTGGCCAGCTCTGACACAGTGGGAGGCCTCCCCAGAGAGA------GGCCCTGGCTCCACGTACTTCCAGGCCTGGGCTGGGTCACACACAAGGCCTTTCTCTCC-CTCTTTCCCCAGGCCCTCCTTTCCTGCAGAAGCACCTGCACACCAGGGCAGGCCCTGCCCACTGTGGGTTCCGCCCTCCACCTACAGCTCAGTGTTCCTCCCCTTCCAGTCCTGAGCAGGCAGCTCCTACCTGGAGAGCCCACCAGGAAGCCCAGCAGGCCTGTCAGGCCCAGGATGGAAACACGTGGCTGCCATGGGGTCTGCATCTGACCTGACCCTGGAGACCCCCTTGCTCAAGAAGGCTCTGCTTCCCTTGACACCCAGGTCCATGACCTGCACTTGGG--ATGCCCTGCTCCTGCCTGGTCCACTCATCCCTGGAAATCCAGCTCCACCCCAGGGCTGCTGCTTGGTGAGGCTGCAAGGCCTTCCTGTCT-------------GGTTCCTAGCAGGGA-------------TTCCA------CCCAGGCCACTGCCCTCACA-CCCACAGGGGATCTTCTTCTTCTCCCTATGGAATAAGGGATTTCTTGAGACCCCTCAGCCTGAGGCTGCCTCCGCCCACTC--TGCACCTGGGGATTGCCACAGCCACAGCTACCATCTCCCACATGGACCCTTCTAGAGAGAGAGTTTCAAATTTGAATTCCTGTTCCATTCAATGTGCTTTACAGCATCGGTATTGGAGGAAATCCTATTAAGAATATCCAGCTGAAATTATGAACATCTTTATTGGACATCAACATTGAAAGCAGGAATTTTGAGAAATTAGCATGTGATTTTCACAACCTTTTTCTGGCCAGTGCCCCAGTGACCTACAAGGAAACCTTTACTGCCCACAGGGAACCAGAACTGACAATTCCTCTACGGGAGATGCTGCAGGTGAGAGGAGGAGCAAC--CAGACCTGCACT-GCCCCTGCTGTGGGTGCC
i panTro5.chr6             C 0 N 0
s panPan2.chr6             30201090 982 + 173848474 AAACTCAGTGCCCT---CCCCTCCTCTCAAGCCTGGCCAGCTCTGACACAGTGGGAGGCCTCCCCAGAGAGA------GGCCCTGGCTCCACGTACTTCCAGGCCTGGGCTGGGTCACACACAAGGCCTTTCTCTCC-CTCTTTCCCCAGGCCCTCCTTTCCTGCAGAAGCACCTGCACACCAGGGCAGGCCCTGCCCACTGTGGGTTCCGCCCTCCACCTACAGCTCAGTGTTCCTCCCCTTCCAGTCCTGAGCAGGCAGCTCCTACCTGGAGAGCCCACCAGGAAGCCCAGCAGGCCTGTCAGGCCCAGGATGGAAACACGTGGCTGCCACGGGGTCTGCACCTGACCTGACCCTGGAGACCCCCTTGCTCAAGAAGGCTCTGCTTCCCTTGACACCCAGGTCCATGACCTGCACTTGGG--ACGCCCTGCTCCTGCCTGGTCCACTCATCCCTGGAAATCCAGCTCCACCCCAGGGCTGCTGCTTGGTGAGGCTGCAAGGCCTTCCTGTCT-------------GGTTCCTAGCAGGGA-------------TTCCA------CCCAGGCCACTGCCCTCACA-CCCACAGGGGATCTTCTTCTTCTCCCTATGGAATAAGGGATTTCTTGAGACCCCTCAGCCTGAGGCTGCCTCCGCCCACTC--TGCACCTGGGGATTGCCACAGCCACAGCCACCATCTCCCACATGGACCCTTCTAGAGATAGAGTTTCAAATTTGAATTCCTGTTCCATTCAATATGCTTTACAGCATCGGTATTGGAGGAAATCCTATTAAGAATATCCAGCTGAAATTATGAACATCTTTATTGGACATCAACATTGAAAGCAGGAATTTTGAGAAATTAGCATGTGATTTTCACAACCTTTTTCTGGCCAATGCCCCAGTGACCTACAAGGAAACCTTTACTGCCCACAGGGAACCAGAACTGACAATTCCTCTACGGGAGGTGCTGCAGGTGAGAGCAGGAGCAAC--CAGACCTGCACT-GCCCCTGCTGTGGGTGCC
i panPan2.chr6             C 0 N 0
s gorGor5.CYUI01015250v1    6119393 987 +   6154872 AAACCCAGTGCCCT---CCCCTCCTCTCAAGCCTGGCCAGCTCTG--ACAGCAGGAGGACTCCCCAAAGAGAGGCTCTGGCCCTGGCTCCATGTCCTTCCAGGCCTGGGCTGGGTCACACGCACAGTCCTT-TCTCC-CTCAGTCCCGAGTCCCACCTCACCTGTAGCGACCCCTGCACACAAGGGCAGGCCCTAAACACTGT-GGTTCTGCCCTCCACCTGCAGCTCAGTGCTCCTCCACTTCCAGCCCTGAGCAGGCAGCTCCTAACTGGGAAGCCCATTAAGAA-TCCATCA-GCACGGCAGGCCCAGCATGGAAACATGTAGCTGCTATGGGGTCTGCAGCTGACCTGACCCTGGGAACCCCCTTGCTCAAGGAGGCCCTGCCTACCCTGACCCCCAGGCCCATGACCTGCACTTGGGCCATG-CTTGCTCCAGCCTGGTCCACTCATCCCTGGAAGCACAGCTTCTCCCCAGGGCTGCTGCTTGGGGAGGCTGAAAGGCCTTCCTCTCC-------------TGTTCCTAGCAGGGA-------------TTCCAGCAGTCACCAAGCCACTGCCCTCACAGCCCATAGGGGA---TCTTCTTCTCCCTGTGGAGTAGAAAGTTTCTTGAGACCCCTCAGCCTGAGGCTGCCTCTGCCCACCCTTTGCACTTGGGGATTGCCACTGCCACAGCCACCATCTCCCACATGGACCGTCCTGGAGAGGGAGCTCCACATTTGAGTTCCTGTTTCATTTGATATGCTTTACAACATCAGTATTGGTGGAAATCCTTTTAAG---ACCCAGCTGAAACTACGAACATCTTTATTGGACATCAGCATTTAAAGCAGGAATTTTGAGAAATTAGCACATAACTTTCACACCCCTTTCCTGGCCAATGCCCCAGTAACCTACAAGGCAACCATTCCCGCCCACGGGGAACCAGAACTGACAATCCCTCTTCAGGAGACACCACAGGTGAGAGCAGGAGCGACCACAGACCTGCACT-G-CCCTGCTGTGGGTGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30448299 952 + 172585720 AAACTCAGTGCCCT---CCCCTCCTCTCACGCTTGACCAGCCCTGACACAGTGGGAGGCCTCCCCAAAGAGAGGCCCTGGCCCTATCTCCATGTCCCTCCAGACCTGGGCTGGGTCACACACACAGTCCTTCTCCCCACTCAGTCCTCAGTCCCTCCTCATCTGCGGAGGCACCTGCACACCAGGACAGACCCTGCACATTGTGGGTTCTGCACTCCAGAGGTGGCTCACTGTTCCTCCCCTCCCAGCTCTAAGCAGACAACTCCTAACTGGAGATCCCATCAGGAAGCCCTGGG-GCTCA-CAGGTCCAGCGTGGAAATATGTGGCTGCCATGGAGTCTGCACTTGACGTGATGCTGCTGATTCCCTTGCTCAAGGAGGCCCAGTCTCCCCT---------CCCCATAACCTGCATGTGGGCTATG-CTTGCTCCTGACT-GTCCACTCACCCCTGGAAATGCAGCTCCACCCCAGGGCTGCCGCTTGGTGGGGCTGCAGGACCTTCCTGCCA-------------CGTTCCTCGCAGGGA-------------TTCCA------CCCAGGCCACTGCCAGTGAAGCCCACAGGGGATCTTCTCCTTTTCCTTGTGGAGTAGGGTGTTTCTTCAGACCCCTCAGCCTGAGGCAGCCTCCACCC--CCTCTGCACCTGGGGACTGCCACTGCCACAACCATCATCTCCCACATGGACCCTCAGAGAAAGGAAGCTCCAAATTTGAGTTCCTGTTCCATTCAACATGCTTTA---CATCAGTATCGG-------------------TCCCAACTGAAATTATG-------TTGATGGACATCAACATTTAAAGCAGGAATTTTGAGAAACTGACATGTGATTTTCATACCTTTTTTCTGGGCAATGTTCCAGTGACCTACGAGGAAACCATTCCTGCCTACAGGGAACCAAAGCTGAGAATCCCCCTATAGGAGACACCACAGGTGAGAGCAGGAGCGACCACAGACCTGCACTCCCCCGTGCTGTG-GTGCC
i rheMac8.chr4             I 1 C 0
s cerAty1.NW_012002535v1     106864 954 -    863181 AAACTCAGTGCCCT---CCCCTCCTCTCACGCCTGACCAGCCCTGGCACAGTGGGAGGCCTCCCCAAAGAGAGGCACTGGCCCTGTCTCCATGTCCCTCCAGACCTGGGCTGGGTCACACACACAGTCCTTCTCCCCACTCAGTCCCCAGGGCCTCCTCATCTGCGGAGGCACCTGCACACCAGGGCAGACCCTGCATATTGTGGGTTCTGCACTGCAGAGGTGGCTCACTGTTCCTCTCCTCCCAGCTCTAAGCAGACAACTCCTAACTGGAGATCCCATCAGGAAGCCCTGGG-GCTCA-CAGGTTCAGTATGGAAATATGTGGCTGCCATGGAGTCTGCACCCGACGTGATGCTGGTGATTCCCTTGCTCAAGGAGGCCCAGTCTCCCCT---------CCCCATAACCTGCATGTGGGCTGTG-CTTGCTCCTGCCT-GTCCACTCACCCCTGGAAATGCAGCTCCACCCCAGGGCTGCCGCTTGCTGGGGCTGCAGGACCTTCCTGCCA-------------CGTTCCTAGCAGGGA-------------TTCCA------CCCAGGCCACTGCCATTGAAGCCCACAGGGGATCTTCTCCTTTTCCTCGTGGAGTAGGGTGTTTCTTCAGACCCCTCAGCCTGAGGCTGCCTCCACCCAACCTCTGCACCTGGGGACTGTCACTGCCACAACCATCATCTCCCACATGGACCCTCAGAGAAAGGAAGCTCTAACTTTGAGTTCCTGTTCCATTCAACATGCTTTA---CATCAGTATCGG-------------------TCCCAACTGAAATTATG-------TTGATGGATATCAACATTTAAAGCAGGAATTTTGAGAAATTGACATGTGATTTTCATACCCTTTTTCTGGCCAATGTCCCAGTGATCTGTGAGGAAACCATTCCTGCCTACAGGGAACCAAAGCTGACAATCCCTCTACGGGAGACTCCGCAGGTGAGAGCAGGAGCAACCATAGACCTGCACT-CCCCGTGCTGTGAGTGCC
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29333624 955 -  71996105 AAACTCAGTGCCCT---CCCCTCCTCTCATGCCTGACCAGCCCTGACACAGGGGGAGGC--CCCCAAAGAGAGGCCCTGGCCCTGTCTCCATGTCCCTCCAGTCCTGGGTTGGGTCACACACACAGTCCTTCTACCC-CTCAGACCCCAGGACCTCCTCATCTGCGGAGGCACCTGCACACCAGGGCAGACCCTGCACATTGTGGGTTCTGCACTCCACCTGCAGCTCAGCGTTCCTCCCCTCCCCGCTCTGAGCGGGCAGCTTCTAACTGGAGATCCCATGAGGAAGCCCTGGG-GCTCA-CAGGCCCAGCATGGAAATATGTGGTTG-GATGGAGTCTGCACCTGACCTGATGCTGGGGACCCCCTTG----AGGAG-----CCCTCCCCT---------CCCCATAACCTACACTTGGGCTGTG-ATTGCCCCAGCCTGGTGCACTCATCCCTGGAAACGCAGCTCCATCCCAGAACTGCTGCTTCGTGAGACTGCACAGCCTTCCTGCCG-------------TGTTCCTAGCAGGGA-------------TTCCA------CCCAGGCCACTGCCATTGCAGCTCACAGGGGATCTTCTTC---TCCTTGTGCAGTAGGGGGTTTCTTCAGACCCCTCATCCTGAGGCTGCCT----CCACCCTCTGCACCTGGTTATTGCCACTGCCACAGCCACAGTCTCCCACATGGACCCTCCGAGAAAAGAAGCTCCAAATTTGAGCTCCTGTTCCACTCAACATGCTTTACAGCACCAGTATCGGAGGACATCTTATTAAGATTATCCAGCTGAAATTATG-------TTGATGGACATCAACATTTAAAGCAGGAATTTTGAGAAATTAACA--TGATTTTCATGCCCTTTTTCTGGCCAATATTCCAGTCACCTGTGAGAAAACCATTCCTGCTTACAGGGAAGCAGAACTGACAGTCCCTCTACAGGAGACACCACAGGTGAGAGCAGGAGGGATCACAGACCTGCACT-GCCCCTGCTGTGAGTGCC
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012101121v1     102010 954 +    273075 AAACTCAGTGCCCT---CCCCTCCTCTCACGCCTGACCAGCCCTGACACAGTGGGAGGCCTCCCCAAAGAGAGGCCCTGGCCCTATCTCCATGTCCCTCCAGGCCTGGGCTGGGTCACACACACAGTCCTTCTCCCCACTCAGTCCCCAGACCCTCCTCATCTGTGGAGGCACCTGCACACCAGGGCAGACCCTGCACATTGTGGGTTCTGCACTCCGGAGGTGGCTCACTGTTCCTCTCCTCCCAGCTCTAAGCAGACAACTCCTAACTGGAGATCCCATCAGGAAGCCCTGGG-GCTCA-CAGGCCCAGTATGGAAATATGTGGCTGCCATGGAGTCTGCACCCGACGTGATGCTGGTGATTCCCTTGCTCAAGGAGGCCCAGCCTCCCCT---------CCCCATAACCTGCATGTGGGCTGTG-CTTGCTCCTGCCT-GTCCACTCACCCCTGGAAATGCAGTTCCACCCCAGGGCTGCCGCTTGGTGGGGCTGCAGGACCTTCCTGCCA-------------CGTTCCTAGCAGGGA-------------TTCCA------CCCAGGCCACTGCCATTGAAGCCCACAGAGGATCTTCTCCTTTTCCTCATGGAGTAGGGTGTTTCTTCAGACCCCTCAGCCTGAGGCTGCCTCCACCCACCCTCTGCACCTGGGGACTGTCACTGCCACAACCATCATCTCCCACATGGACCCTCAGAGAAAGGAAGCTCTAAATTTGAGTTCCTGTTCCATTCAACATGCTTTA---CATCAGTATCGG-------------------TCCCAACTGAAATTATG-------TTGATGGATATCAACATTTAAAGCAGGAATTTTGAGAAATTGACATGTGATTTTCATACCCTTTTTCTGGCCAATGTCCCAGTGATCTATGAGGAAACCATTCCTGCCTACAGGGAACCAAAGCTGACAATCCCTCTACGGGAGACTCCGCAGCTGAGAGCAGGAGCAACCACAGACCTGCACT-CCCCGTGCTGTGAGTGCC
i manLeu1.NW_012101121v1   I 1 C 0
s colAng1.NW_012115566v1    2935251 964 -   3067355 AAACTCAGTGCCCTTTCCTCCTCCTCTCACGCCTGACCAGCCCTGACCCAGTGGGAGGCCTCCCC-AAGAGAGGCCCTGGCTGTGTCTCCATGT-CCTCCAGTCCTGGGCTGGGTCACACACACAGTCCTTCTACCT-CTCAGACCCCAGGACCTCCTCATCTGCAGAGACACCTGTACACTAGGGCAGGCCCTGCACACTGTGGGTTCTGCCCTCCACCTGCAGCTCAGCGTTCCTCCCCTCCCAGCTCTGAGCACACAGCTCCTAACTGGAGATTCCATCAGGAAGCCCTGGG-GCTCA-CAGGCCCAGCGTGGAAATATGTGGCTGCCATGGAGTCTGCACCTGATGTGATGTTGGTGATTCCCTTGCTCAAGGAGGCCCAACCTCCCCT---------TCCCGTAACCTGCATGTGAGCTGTG-CTTGCTCCTGCCT-GTCCACTCACCCCTGGAAATGCAGCTCCACCCCAGGGCTGCTGCTTAGTGGGGCTGCAGGACCTTCCTGTCC-------------AGTTCCTAACAGGGC-------------TTCCA------CCCAGGCCACTGCCATTGCTGCCCACAGGGGATCTTCTCCTTCTCCTTGTGGAGTAGGGGGTTTATTCAGACCCCTCAGCCTGAGGCTGCCTCTGTGCACCCTCTGCACCTGGGGATTGCCACTGCCACAGGCACCATCTCCCACATGGATCCTCTGAGAAAGGAAGCTCTAAACTTGTGTTCCTGTTCCATTCAACGTCCCTTACAACATCAGTACTGGAGGACATCCTATTAAGATTATCCAGCTGAAATTATG-------TTGATGGACATCAACATTTAAAGCAGGAATTTTGAGAAATTAACATGTGATTTTCATGCCCTTTTTCTGGCCATTGTCCCAGT----------GAAACCATTCCTGCCTGCAGGGAACCAGAACTG--AATCCCTCTATGGGAGATGCCACAGGTGAGAGCAGGAGCGACCACAGACCTGCACT-GCCCGTGCTGTAGGTGCC
i colAng1.NW_012115566v1   I 65 C 0
s cebCap1.NW_016107755v1     430024 997 -   1771730 AAACCCGGTGCCCT---CCCCTCCTCTAAAGCCTGGCCAGCTCCG--ATAGCAGGAGGACTCCCCAAAGACAGTTCCTGACCCTGGCTCCATGTCCTTCCAGGCCAGGGCTGCGTGACACACACAGTCCTTCT-CCC-CTCAGTTCCCAGTCCCACCTCACCGGCAGAGGCACCTGCACATGA-GGTAGACCCTGTACACTGC-GGCTCTGCCCTCCACCTGCAGCTCAGCGCTCCTCCCCTCCCAGACCTGAGCAGGCAGCTCCTAACTGGGCAGCCCATTAAGAAGCCCACTG-GCACAGCTGGCCAAGCATGGAAATATGTTCCTGCCATGGAGTCTGCAGCTCACCTGACCCTGGGGACCCCCTTGTTCAAGGAGGCCCGGCCTAGCCTAACCCCCAGGCCCATGACCTACACTTGGGCCATC-CTTGCTCCAGCCTGGTCCACTCACTTCAGGAAGCACAGCTCCACCGGAGGGCTGCCACTTGGTGAGGCCGAAAGACCTTCCTCTTC-------------CGTTCCTAGCAGAGATTCCTACCAGGTATTCCA------CCCAAGCTGCTGATCTCACAGCCCATAGGGGTCCCTCTTCTTCTCCCTACAGAGTAGAAAGTTTCTTGAGATCCCTCAGCCGGAGGCTACCTCTGCCCACTCTCTGCACTCGGGGGTTGCCACTGCCACAGCCACCATCTCCCCTATAGACCCTCCTGGAGAGGGAGCTCCAAGTGTGAGTTCCTGTTTCATTCAATCTGCTTTACAACATTAATATTGGTGGGAATCCTTTTAAG---ACCCAGCTGAAATTATGAACATCTTGATTGGACATCAACATTTAGAGCAGTAATTTGGAGAAATTAGAACATAACTTTCATATCATTTTCTTGGTCAATGCCCCGGTGACTTACAAGGC-ACCGTTCCTGCCCACAGGGAACCAGCACTGACAGTCCCTCCACAGGAGACTCCGAAGGCGAGAGCAGGAGCCACTACTGACCTGCACT-GCCCCTGCTGTGGGTGCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     112571 995 -    383796 AAACTCAGTGCCCT---CCCCTCCTTTCAAGCCTGGTCAGCTCTG--ACAGCGGGAGGAATCCCCAAAGACGGTCCCTGGCCCTGGCTCCATGTCCTTCCAGTTCTGGGCTGGGTCACACACACAGTCCTTCTCCCC-CTCAGTCCCCAGTCCCACCTCACCTGCAGAGGCACCTGTACACCA-GGCAGGCCCTGCACACTGT-GGCTCTGCCCTCCACCTGCAGCTCAGCGCTCCTCCCCTCCCAGCCCTGAGCAGGCAGCTCCTAACTGGGCAGCCTATTAAGAAGCCCATCA-GCAAAGCTGGCTCAGCATGGAAACATGTGGCTGCCATGGGGTCTGCAGCTCACCTGACCCTGGAGACCCCCTTGCTCAAGGAGGCCCAGCCTAGCCTGACCCCCAGGCCCATGACCTGCACTTGGGCCATG-CTTCCTCCAGCCTGGTCCACTCACTTCGGGAAGCACAGCTCCACCCCAGGGCTGCTGCTTGGTGAGACCGAAAGACCTTCCTCTTC-------------CGTTCCTAGCAGGGATTCCTAGCAGGGGTTCCA------CCCAAGCCACTGACCTCACAGCCCATAGGGG---ATCTTCTTCTCCCTGTGAAGTAGAGAGTTTCTTGAGACCTCTCAGCctgcagctgcctctgcccaccctctgcactcagggattgccactgccacagccacCATCTCCCCTATGAACCCTCCTGGAGAGGAAGCTCCAAGTGTGAGTTCCTGTTTCACTTAATCTGCTTTACGACATTAGTATTGGTGGAAATCCTTTTAAG---ACGCAGCTGAAATTATGAACATCTTGATTGGACATCAACATTTAG-GCAGGAATTTTGAGAAATTAGCATATAACTTTCATATCCTTTTCCTGGCCAATGCCCCACTGACCTACAAGGCAACCGTTCCTGCCCACAGGGAATGAACACTGACAATCCCTCCACAGGAGACTCCGCAGGTGAGAGCAGGAGCCACCACAGACCTGCACT-GCCCCTGCTGTGGGTGCC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74837873 41852 + 122973662 T

a score=571627.000000
s hg38.chr6_GL000254v2_alt  1116197 239 +   4827813 TCCTGGACAGGGCCCTCTTGCTGCAGGGCAGGGGATTAACCATCCCATCTGCCCAGGCCTGAGGGGCCAACTGACAGTGCAATTAGGTTCAAGGATGAGAAATCA-----CCACCC--CCTGCCAGATACACAGAAGTGGGGAAATGGCAGAAAGACTCGGGTTTCCCGGACACTCCAGGCTCTCAGTGTCTCCTGCACTGTCTCTGTCTTTGCAGAAACAC--A-AAACT-TGCTGCTTGCTCTTTTCC
s gorGor5.CYUI01015250v1    6120380 238 +   6154872 TCCTGGACAGGGCCCTCTTGCTGCAGGGCAGGGGATGAACCATCCCATCTGCCCAGGCCTGAGGGGCCAACTGACAG-GGAATTAGGTTCAAGGATGAGAAATCA-----CCACCC--CCTGCCAGATACACAGAAGTGGGGAAATGGCAGAAAGACTCGGGTTTCCCGGACACTCCAGGCTCTCAGTGTCTCCTGCACTGTCTCTGTCTTTGCAGAAACAC--A-AAACT-TGCTGCTTGCTCTTTTCC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30449251 241 + 172585720 TCCTGGATGGGGCCCTCTTGCTGCAGGGCAGGGGACAAACCATCCCATCTGCCCAGGCCTGAGGGACTGACTGACAGTGCCATTAGGTTCAAGAATGAGACACCA-----CCACCCCACTGGCCAGGCACACAGAAGTGGGGAAATGGCAGAAAGACTCGGGTTTCCTGAACACCCCAGCCTCTCCCTGTCCCCTGCACTGCCTCTGTCTTTGCAGAAACAC--A-AAACT-TTCTGTTTTCTCTTTTCC
i rheMac8.chr4             C 0 I 66626
s cerAty1.NW_012002535v1     107818 239 -    863181 TCCTGGATGGGGCCCTCTTGCTGCAGGGTAGGGGACGAACCATTCCATCTGCCCAGGCCTGAGGGACTAACTAACAATGCCATTAGGTTCAAGAATGAGACAACA-----CCACCCCACTGGCCAGGCACACAGAAATGGGGAAATGGTAGAAACACTCGGGTTTCCTGGACACCCCAGCCTCTCCCTGTCCCCTGCACTGCCTCTGTCTTTGCAGAA--AC--A-AAAAT-TTCTACTTTCTCTTTTCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29334579 240 -  71996105 TCCTGGAC-GGGCCCTCTTGCTGCAGGGCAGGGGATGAACCATCCCATCTGCTGAGGCCTGAGGGGCTGACTAACAGTGCAATTAGGTTCAAGGATGAGTCGCCA-----CTACCCCACTGGCCAGACACACAGAAGTGGGGAAATGGCAGAAAGACTCGGGTTTCCTGGACACCTCAGCCTCTCACTGTCCCCTGCACTGCCTCTGTCTTTACAAAA--AC--ACAAAATGTTCTGCTTTCTCCTCTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     102964 239 +    273075 TCCTCGACGGGGCCCTCTTGCTGCAGGGCAGGGGAGGAACCATCCCATCTGCCCAGGCCTGAGGGACTAACTAACAATGCCATTAGGTTCAAGAATGAGACAACA-----CCACCCCACTGGCCAGGCACACAGAAATGGGGAAATGGCAGAAACACTCGGGTTTCCTGGACACCCCAGCCTCTCCCTGTCCCCTGCACTGCCTCTGTCTTTGCAGAA--AC--A-AAAAT-TTCTACTTTCTCTTTTCC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2936215 234 -   3067355 TCCTGGACGGGGCCCTCTTGCTGCAGGGCAGCGGATGAACCATCTCATCTGCCCAGGCCTGAGGCTCCGGCTGACAGTGCCATTAGG-------ATGAGTCACCA-----CCACCTCACTGACCAGACACACAGAAGTGGGGAAATGGCAGAAAGACTTGGGTCTCCCAGACACCCCAGACTCTCATTGTGCCCTGCACTGTCTCTGTCTTTGCAGAA--ACTGA-AAACT-TTCTGCTTGCCCTTTTCC
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     431021 235 -   1771730 TCCTGGACGGTGCCCTCCTGCTGCAGGGCACGGGATGAACCATTCCAT----------TGGAGGGGCCGACTGACTGTGCAATTAAGCTCAAGGATGAGAAACCACACCCCCCCCCCACCCGCCAGACACACAGAAGT-GGGAAATGGCAGAAAGTCTCGGGTTTCCTGTACACTCCATCCTCTCATAGTCTCCTGCAGTGTCTCTGTCTTTGCAGAAGCAC--A-AAACT-TCCTACCTGCTCTTTCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     113566 231 -    383796 TCCTGGATGGTGCTCTATTTCTGCAGGGCACGGGATGAACCATCCCAT----------TGGAGGGGCTGACTGACAGTGCAATTAAGTTCAAGGATGAGAAACCA----CCCCCCCCA-CTACTAGACACACAGAAATGGGGAAATGGCAGAAAGACTCGGGGTTCCTGGACACTCCATCCTCTCAGAGTCTCCTGCACTGTCTCTGTCTTTGCAGAAGCAC--A-AAACT-TCCTACTTGCTCTTTCCC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74837873 41852 + 122973662 T

a score=8134.000000
s hg38.chr6_GL000254v2_alt  1116436 4 +   4827813 CCTC
s gorGor5.CYUI01015250v1    6120618 4 +   6154872 CCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30516118 4 + 172585720 CCTC
i rheMac8.chr4             I 66626 I 10705
s cerAty1.NW_012002535v1     108057 2 -    863181 --TC
i cerAty1.NW_012002535v1   C 0 I 2
s chlSab2.chr17            29334819 4 -  71996105 CCTC
i chlSab2.chr17            C 0 I 13318
s manLeu1.NW_012101121v1     103203 4 +    273075 TCAC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2936449 4 -   3067355 TCTC
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     431256 4 -   1771730 TCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     113797 4 -    383796 TCTC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macFas5.chr4             29871331 796 - 170955103 I
e nomLeu3.chr1a            74837873 41852 + 122973662 T

a score=41095.000000
s hg38.chr6_GL000254v2_alt  1116440 29 +   4827813 CCTTCAAACAACCTGACTGTGCGGGAAAT
s gorGor5.CYUI01015250v1    6120622 29 +   6154872 CCTTCAAACAACCTGACTGTGCGGGAAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002535v1     108061 29 -    863181 CCCTCAAACAACCTGACTATGGGGGAAAT
i cerAty1.NW_012002535v1   I 2 I 15003
s manLeu1.NW_012101121v1     103207 29 +    273075 CCCTCAAACAACCTGACTATGGGGGAAAT
i manLeu1.NW_012101121v1   C 0 T 46679
s colAng1.NW_012115566v1    2936453 29 -   3067355 CCCTCAAACAACCTGGCTGTGGGGGAAAT
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     431260 28 -   1771730 CCCTCAAGCAACCTGACTGTGGGCGAAT-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     113801 28 -    383796 CCCTCCAACAACCTGACTGTGGGGAAAT-
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e chlSab2.chr17            29334823 13318 -  71996105 I
e macFas5.chr4             29871331 796 - 170955103 I
e rheMac8.chr4             30516122 10705 + 172585720 I
e nomLeu3.chr1a            74837873 41852 + 122973662 T

a score=5613.000000
s hg38.chr6_GL000254v2_alt  1116469 9 +   4827813 CATCCTGAC
s gorGor5.CYUI01015250v1    6120651 9 +   6154872 CATCCTGAC
i gorGor5.CYUI01015250v1   C 0 C 0
s colAng1.NW_012115566v1    2936482 9 -   3067355 GATTCTGAC
i colAng1.NW_012115566v1   C 0 I 39816
s cebCap1.NW_016107755v1     431288 9 -   1771730 CCTCCTGAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     113829 9 -    383796 TCTCCTGAC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e chlSab2.chr17            29334823 13318 -  71996105 I
e cerAty1.NW_012002535v1     108090 15003 -    863181 I
e macFas5.chr4             29871331 796 - 170955103 I
e rheMac8.chr4             30516122 10705 + 172585720 I
e nomLeu3.chr1a            74837873 41852 + 122973662 T

a score=11427.000000
s hg38.chr6_GL000254v2_alt  1116478 28 +   4827813 CATCTCTCACTCCAAACTCATCAGGCAG
s gorGor5.CYUI01015250v1    6120660 28 +   6154872 CATCTCTCACTCCAAACTCATCAGGCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s cebCap1.NW_016107755v1     431297 27 -   1771730 CGTCTCTTACTCCAAACTTGCT-GGCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     113838 28 -    383796 CATCTCTTACTCCAAACTTACTGGGCAG
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2936491 39816 -   3067355 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e chlSab2.chr17            29334823 13318 -  71996105 I
e cerAty1.NW_012002535v1     108090 15003 -    863181 I
e macFas5.chr4             29871331 796 - 170955103 I
e rheMac8.chr4             30516122 10705 + 172585720 I
e nomLeu3.chr1a            74837873 41852 + 122973662 T

a score=6876.000000
s hg38.chr6_GL000254v2_alt  1116506 2 +   4827813 Tg
s panTro5.chr6             30202711 2 + 175400573 tg
i panTro5.chr6             N 0 C 0
s panPan2.chr6             30432590 2 + 173848474 tg
i panPan2.chr6             N 0 C 0
s gorGor5.CYUI01015250v1    6120688 2 +   6154872 TG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796021 2 + 122973662 tg
i nomLeu3.chr1a            T 41852 C 0
s rheMac8.chr4             30526827 2 + 172585720 tg
i rheMac8.chr4             I 10705 C 0
s chlSab2.chr17            29348141 2 -  71996105 tg
i chlSab2.chr17            I 13318 C 0
s cebCap1.NW_016107755v1     431324 2 -   1771730 TG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     113866 2 -    383796 TG
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2936491 39816 -   3067355 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e cerAty1.NW_012002535v1     108090 15003 -    863181 I
e macFas5.chr4             29871331 796 - 170955103 I

a score=565213.000000
s hg38.chr6_GL000254v2_alt  1116508 186 +   4827813 cttattctttcaaaggtattttgtgactgtgcaagcaaatataaatgtatatgtgtatgttctttctccctttgcacacaaattttagcaaactacatatgcttttctgtaccttgctgttttcccttaccattgtatcacggagaccatcccatgaagaaatatcaagaactacactatgtcttt
s panTro5.chr6             30202713 185 + 175400573 cttattctttcaaaggcattttatgcatatgcaagtcaatctaaatgtatatgtatataatctttctcccatttcacacaaattttagcaaactacatatgctttcctgcaccttgcc-ttttcccttcacattgtatcacaaagaccatcacatgaagaaataccaagagcttagctacatcttt
i panTro5.chr6             C 0 I 51
s panPan2.chr6             30432592 185 + 173848474 cttattctttcaaaggcattttatgcatatgcaagtcaatctaaatgtatatgtatataatctttctcccatttcacacaaattttagcaaactacatatgctttcctgcaccttgcc-ttttcccttcacattgtatcacaaagaccatcacatgaagaaataccaagagcttagctacatcttt
i panPan2.chr6             C 0 I 54
s gorGor5.CYUI01015250v1    6120690 183 +   6154872 CTtattctttcaaagg-attttgtgactgtgcaagcaaatataaatgtatatgtgtatgttctttctccctttgcacacaaattttagcaaactacatatgcttttctgtactttctg-ttttcccttaccattgtatcacggagaccattccatgaagaaatatcaagaactacac-atgtcttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796023 184 + 122973662 tctattctttc-aagacattttgtacatatgcaagcaaatataaatgtatatgtatataatctttctcccatttcactcaaattttagcaaactacatctgctttcctgcactttgcc-ttttccctttacattgtgtcacaaacaccatcccatgaagaaataccaaaagctttcctacatcttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30526829 185 + 172585720 cttattctttcaaagacattttgtgcatatgcaagcaaatataaatgtatatgtatatcatctttctcccatttcactcaaattctagcaaactacatctgctttcctgcaacttgcc-ttttccctttacattgtgtcacaaagaccatctcatgaagaaataccaaaagctttcctacatcttt
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     123093 185 -    863181 cttattctttcaaaggcattttatgcatatgcgagtcaatctaaatgtatatgtatataatctttctcccatttcacacaaattttagcaaactacatatgctttcctgcaccttgcc-ttttcccttcacattgtatcacaaagaccatcacatgaagaaataccaagagcttcgctacatcttc
i cerAty1.NW_012002535v1   I 15003 I 39
s chlSab2.chr17            29348143 185 -  71996105 cttattctttcaaagacattttgtgcatatgcaagcaaatgtaaatgtatatgtatataatctttctcccatttcactgaaattttagcaaactacatctgctttcctgcaacttgcc-ttttccctttacattgtgtcacaaagaccatcccatgaagaaataccaaaagctttcctacatcttt
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1     431326 178 -   1771730 CCtattc-ttcaaagacattttgtgaatatgcaagtaaatggaaatgtatatgt------tttttctctcttttcacacaaattttagcagactac-tatgcttttctgcaccttgctgttttccctttacattgtatcatggagaccatcccatgaagaaatatcaagagctacactatgtcttt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     113868 179 -    383796 CTtattc-ttcaaagacatcttgtgaatacgcaagtaaatgtaaatgtaaatgt------tctttctctcttttcacacacattttagcagactacatatgcttttctgcaccttgatgtttttccttaacattgtaacgtggagaccatcccgtgaagaaatatcaagagctacactatgttttt
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2936491 39816 -   3067355 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e macFas5.chr4             29871331 796 - 170955103 I

a score=60243.000000
s hg38.chr6_GL000254v2_alt  1116694 47 +   4827813 cttttttttgttcaaaaatttcttggcaatccattgtataggcatgc
s gorGor5.CYUI01015250v1    6120873 47 +   6154872 cttttttttgttcaaaattttcttggcaatccattgtataggcatgc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796207 46 + 122973662 -gtgtctttgtgtgaaattttcatgatactccattgtatacatatgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30527014 46 + 172585720 -gtgtctttgtttgaaattttcatgatactccattgtatagatatgc
i rheMac8.chr4             C 0 I 1
s chlSab2.chr17            29348328 46 -  71996105 -gtgtctttgtttgaaattttcatgatactccattgtatacatatgc
i chlSab2.chr17            C 0 I 1
s cebCap1.NW_016107755v1     431504 46 -   1771730 -ctttttttgttcaaaattttcatggcaatccattgtgtaggtatGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     114047 46 -    383796 -ctttttttgttcaaaattttcatggcaatccattgtgtaggtCTGG
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2936491 39816 -   3067355 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e cerAty1.NW_012002535v1     123278 39 -    863181 I
e macFas5.chr4             29871331 796 - 170955103 I
e panPan2.chr6             30432777 54 + 173848474 I
e panTro5.chr6             30202898 51 + 175400573 I

a score=9039.000000
s hg38.chr6_GL000254v2_alt  1116741 7 +   4827813 atttttt
s gorGor5.CYUI01015250v1    6120920 7 +   6154872 atttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796253 7 + 122973662 aatattt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30527061 6 + 172585720 -atattt
i rheMac8.chr4             I 1 T 63496
s cerAty1.NW_012002535v1     123317 6 -    863181 -attttt
i cerAty1.NW_012002535v1   I 39 I 6
s chlSab2.chr17            29348375 6 -  71996105 -atattt
i chlSab2.chr17            I 1 N 0
s cebCap1.NW_016107755v1     431550 7 -   1771730 AGTTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     114093 7 -    383796 AGTTTTT
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2936491 39816 -   3067355 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e macFas5.chr4             29871331 796 - 170955103 I
e panPan2.chr6             30432777 54 + 173848474 I
e panTro5.chr6             30202898 51 + 175400573 I

a score=10192.000000
s hg38.chr6_GL000254v2_alt  1116748 4 +   4827813 aaaa
s panTro5.chr6             30202949 4 + 175400573 AAAA
i panTro5.chr6             I 51 C 0
s gorGor5.CYUI01015250v1    6120927 4 +   6154872 aaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796260 4 + 122973662 aAAA
i nomLeu3.chr1a            C 0 I 2
s macNem1.NW_012012100v1      64448 4 +   1495729 AAAA
i macNem1.NW_012012100v1   N 0 C 0
s cerAty1.NW_012002535v1     123329 4 -    863181 AAAA
i cerAty1.NW_012002535v1   I 6 C 0
s cebCap1.NW_016107755v1     431557 4 -   1771730 AAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     114100 4 -    383796 AAAA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2936491 39816 -   3067355 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e macFas5.chr4             29871331 796 - 170955103 I
e rheMac8.chr4             30527067 63496 + 172585720 T
e panPan2.chr6             30432777 54 + 173848474 I

a score=57862.000000
s hg38.chr6_GL000254v2_alt  1116752 25 +   4827813 tagagattaccctttttgaatgcaa
s panTro5.chr6             30202953 25 + 175400573 TAGAGATTGCTTCTTTTGAGTGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30432831 25 + 173848474 TAGAGATTGCTTCTTTTGAGTGCAG
i panPan2.chr6             I 54 C 0
s gorGor5.CYUI01015250v1    6120931 25 +   6154872 tagagattaccctttttgaatgcaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796266 25 + 122973662 AATAGATTGCTCCTTTTGAGTGCAG
i nomLeu3.chr1a            I 2 C 0
s macNem1.NW_012012100v1      64452 25 +   1495729 TAGAGATTGCTTCTTTTGAGTGTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     123333 25 -    863181 TAGACATTGCTTCTTTTGAGTGTGG
i cerAty1.NW_012002535v1   C 0 C 0
s cebCap1.NW_016107755v1     431561 25 -   1771730 TAGAGATGACTCTTTTTGAATGCAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     114104 25 -    383796 TAGAAATGACTCTTTTTGAATGCAA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2936491 39816 -   3067355 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e macFas5.chr4             29871331 796 - 170955103 I
e rheMac8.chr4             30527067 63496 + 172585720 T

a score=113871.000000
s hg38.chr6_GL000254v2_alt  1116777 33 +   4827813 tgctttttaaccagctccctactgatagacatt
s panTro5.chr6             30202978 33 + 175400573 TGCTTtttaatcagccccctcttgataggcatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30432856 33 + 173848474 TGCTTtttaatcagccccctcttgataggcatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6120956 33 +   6154872 tgctttttaaccagctccctgctgataggcatt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796291 33 + 122973662 TGCTTtttaaccagccccctcctaataggcatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30463571 33 + 172585720 TGCTTtttaaccagccccctattgataggcatt
i rheMac8.chr4             T 63496 C 0
s macNem1.NW_012012100v1      64477 33 +   1495729 TGCTTtttaaccagccccctcttgatggacatt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     123358 33 -    863181 TGCTTtttaaccagccccctattgataggcatt
i cerAty1.NW_012002535v1   C 0 C 0
s cebCap1.NW_016107755v1     431586 33 -   1771730 AGCTTTTTAACCAGCCCCCTGCTGATAGGCATT
i cebCap1.NW_016107755v1   C 0 I 6687
s aotNan1.NW_018496904v1     114129 32 -    383796 TGC-Ttttaaccaggcccctgctgatagacatt
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2936491 39816 -   3067355 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e macFas5.chr4             29871331 796 - 170955103 I

a score=523019.000000
s hg38.chr6_GL000254v2_alt  1116810 169 +   4827813 tggattatttcTttcagagaacaatttgacatcatgtagcatcatatgggaagggtgcagtgaccccactcttacatgcatatcctaggggagctcacatattcttggaaccagaaaacaatgtcccagcatgttcattgcagcagtgtctttaataaagactatgtag
s panTro5.chr6             30203011 169 + 175400573 tggattatttcTttcagagaacaattttgcatcatgtaacatcatatggaaaagctgtagtgaccccactcctatatgcatattctagggaaactcacacatctctgagagcaggaggcaatgtcccaggatgttcattgcagtgaggtctacaatagagaaaacctaa
i panTro5.chr6             C 0 N 0
s panPan2.chr6             30432889 169 + 173848474 tggattatttcTttcagagaacaattttgcatcatgtaacatcatatggaaaagctgtagtgaccccactcctatatgcatattctagggaaactcacatatctctgagagcaggaggcaatgtcccaggatgttcattgcagtgaggtctacaatagagaaaacctaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6120989 169 +   6154872 tggattatttctttcagagaacaatttgacatcatgtagcatcatatgggaagggtgcagtgaccccactcctacatgcatatcctaggggagctcacatattcttggaaccagaaagcaatgtcccagcatgttcattgcagcagtgtctttaatagagactatgtag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796324 168 + 122973662 tgggttatttcTTTCACAGAACAATTTTGCATCATGTAGCATCATAT-GAAAAGCTGTAGTGACCccactcctagatgcatatcctaggggaactcacatatctctgagagcaggaggtaatgtcccagaatgttcattgcagtgaggtctacaatagagaaaacctaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30463604 169 + 172585720 tggattatttcTttcagagaacaattttgcattatatagcatcatgtggaaaagctgtagtgaccccactcctagatgtatattctaggggaactcacatatctctgagaacgggaggcaatatcccaggatgttcattgcagtgaggtctacaatagagacaacttaa
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1      64510 169 +   1495729 tggattatttcTttcagagaacaattttgcatcatgtagcatcacgtggaaaaagtgcagtgaccccactcccacacgcacatcgtaggggaactcacatatccctgagagcagaaggcaatgtcccaggatgttcattgcagtgaggtctacaatagagacaacctaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     123391 169 -    863181 tggattatttcTttcagagaacaattttgcatcacgtagcatcatgtggaaaagctgtaatgaccctactcctagatgcatattctagggaaactcacatatctctgagagcaggaggcaatgtcccaggatgttcattgcagtgaagtctacaatagagacaacttaa
i cerAty1.NW_012002535v1   C 0 C 0
s cebCap1.NW_016107755v1     438306 169 -   1771730 TGGATTATTTCTTTAGGAGAACAATGTGACATCATGTAGAGTCATGTGGGAAGGGAGcagtcattccactcctacctgcctatcctaggggaactctcatgtttctggaaccagaacgcaatgtcccagcatgttcgttgcagcaatgtctgtaatagagactacgcag
i cebCap1.NW_016107755v1   I 6687 C 0
s aotNan1.NW_018496904v1     114161 168 -    383796 tggattacttctttaggagaacaatttgacatcatgtagcgtcatgtgggcagggagcagtgattccactcctacctgcatatccta-gggagctcccatattcctggaaccagagcgcaatgtcccagcatgatcatcacagcaatgtctgtaacagagactacacag
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2936491 39816 -   3067355 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e macFas5.chr4             29871331 796 - 170955103 I

a score=341725.000000
s hg38.chr6_GL000254v2_alt  1116979 134 +   4827813 aggtcaatgaagtggggaagagataaattgtagcatattcctcccatggaatactatctagcaatgaaaacaaatgaactatttgtgtgaacattgatccctctcatagaccatgttaacggaaaaagcaagca
s panPan2.chr6             30433058 134 + 173848474 aggtcaatgaagagggaaagagaaaaattgtagtatattcctcccatggaatactatccaccaatgaaagcaaatgaactatttgtatgaacatggattcatgtcatagaacatgttaactgaaaaagcaagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6121158 134 +   6154872 aggtcaatgaattggggaagagataaattgtagcatattcctcccatggaatactacctagcaatgaaaacaaatgaactatttgtgtgaagattgatccatctcatagaccatgttaacggaaaaagcaagca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796492 134 + 122973662 agatcaatgaagagggaaagagataaactgcagcatattcctcccatgaaatactatccatcagtgaaaacaaattaactattcgtatgaacatggattcatttcatagaccacattaactgaaaaaggaagca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30463773 133 + 172585720 gtatcaatgaagagggaaagagataaattgtagtatattcctcccatggaatactatccagtaatgaaagcaaatgaactatttgtatgaacatgaattcatgtcatagaccatgttaactg-aaaagcaagta
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1      64679 134 +   1495729 aggtcaatgaagagggaaagagataaattgtactatattcctcccatggaatactatccagcaatgaaagcaaattaattatttttatgaacatggattcatgtcatagaacatgttaactgaaaaagcaagca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     123560 134 -    863181 atatcaatgaagagggaaagagataaattgtagtatatttcttccatggaatactatccagtaataaaagcgaatgaactatttgtatgaacatgaattcatgtcatagaccatgttaactgaaaaagcaagca
i cerAty1.NW_012002535v1   C 0 C 0
s cebCap1.NW_016107755v1     438475 133 -   1771730 aggtcagtgaagagggaaagagacaaattgcagtagattcctcccatgg-atactatccagcaacgagaacaaatgaactatttttatgaacattgattcatcacattcaccatgttaactaaaaaatcaagca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     114329 133 -    383796 aggtcagtgaagaggggaagacacaaatcgtagcagattcctcccgtgg-atactatccagcaatgagaacaaatgaactatttttgtgaacattgattcatcagatagaccatgttaactgaaaaagcaagta
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2936491 39816 -   3067355 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e macFas5.chr4             29871331 796 - 170955103 I

a score=45628.000000
s hg38.chr6_GL000254v2_alt  1117113 13 +   4827813 aatgcataacaaa
s panPan2.chr6             30433192 13 + 173848474 aatgaatgataaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6121292 13 +   6154872 aatgcataacaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796626 13 + 122973662 aatgaatgataaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30463906 13 + 172585720 aatgaatgataaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29872127 13 - 170955103 aatgaatgataag
i macFas5.chr4             I 796 C 0
s macNem1.NW_012012100v1      64813 13 +   1495729 aatgaatgataaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     123694 13 -    863181 aatgaatgataaa
i cerAty1.NW_012002535v1   C 0 C 0
s cebCap1.NW_016107755v1     438608 13 -   1771730 aatgaatgataaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     114462 13 -    383796 aatgaatgataaa
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2936491 39816 -   3067355 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T

a score=599894.000000
s hg38.chr6_GL000254v2_alt  1117126 143 +   4827813 atcagcaagaaacaatttataaaaagtctaaaaGTAAAgccaggcaagggggcctatacccataatcctagcatcttgggaggccaaggtgggcagattgcttga-ccccaggcgttccagacaagtctgggaaacatgataaa
s panPan2.chr6             30433205 143 + 173848474 attagcaagaaacaatttataagaagtctaaaagcaAAgccaggcaaggtggtgtacacttgtaatcctagcactttgggaggtcatggtgggtggatcgcttga-gttcaggagttcaagaccagcctgggaaacatggcaaa
i panPan2.chr6             C 0 I 88
s gorGor5.CYUI01015250v1    6121305 141 +   6154872 atcagcaagaaacaatttataaaaagtct-aaaGTAAAgccaggcaagg-ggcctatacccgtaatcctagcatcttgggaggccaaggtgggcagattgcttga-ccccaggcgttccagacaagtctgggaaacgtgataaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796639 143 + 122973662 atcagaaagaaactagttaaaataagtctaaaagcaAAgccaggcaagatggcctttacttgtaatcctagcactttgggaggccatggcgggtggatcacttga-gttcaggagtttgagaccagcctgggaaacatggcaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30463919 143 + 172585720 atcagcaagaaacaatttacaagaagtcttaaagcaAAgccaggcaaggtggtgtacacttgtaatcctagcactttgggaggtcaccgtgggtggatcgcttga-gttcaggaattccagaccagcctgggaaacatggcaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29872140 143 - 170955103 atcagcaagatataatttataaaaggtttaaaagcaAAgccaggtgtgggggcctacgcctgtaatcctagcaccttgggaggccaaggagagcaggttgcttga-ccccaggagtttcaggccagcctggaaaacatgacaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      64826 143 +   1495729 attagcaagaaacaatttctaagaagtcaaaaaacaAAgccaggcaaagtggtgtacacttgtaatcctagcactttggaaggccatggtgggtggattgcttga-gttcaggagttccagaccagcctgggaaacatggcaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     123707 143 -    863181 actagcaagaaacaatttacaagaagtcttaaagcaAAgccaggcaaggtggtgtacacttgtaatcctagcactttgggaggtcatggtgggtggatcgcttga-gttcagaagctccagaccagcgtgggaaacacggtaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29245406 143 -  71996105 atcagcaagaaacaatttataaaaagtttaaaagcaAAgccaggtgtagaggcctacgcctgtaatcctagcaccttgggaggccaaggagagcaggttgcttga-ccccaggaatttcaggccagcctggaaaacatggcaaa
i chlSab2.chr17            N 0 C 0
s colAng1.NW_012115566v1    2976307 143 -   3067355 atcagcaagaaacaatttataaaaagtttaaaagcaAAgccaggtgtgggtgcctatgcctgtaatcttagcaccttgggaggccagggagagcaggttgcttga-ccccaggagttccaggccagcctgggaaacatggcaaa
i colAng1.NW_012115566v1   I 39816 C 0
s cebCap1.NW_016107755v1     438621 142 -   1771730 atcagcaagaaacactttataaaaaatctaaaTGCGAAGAAAGGTGAGG--GCCTATCcctgtaatcctagcaccttggcaggccaaggcaggcagattcattgacccccaggagttccagactagcctgggaaacacggcgaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     114475 140 -    383796 atcagcaagaaacacttcataaaaaatctaaaagcaaagaaaGGCAAGg--gcctatgcctgtaatcctagcacatggg-ggaccaaggaagccagagtgatcga-ccccaggagttccagactagcctgggaaacatgacaac
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T

a score=5489.000000
s hg38.chr6_GL000254v2_alt  1117269 6 +   4827813 tccctt
s gorGor5.CYUI01015250v1    6121446 6 +   6154872 tccctt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796782 5 + 122973662 -acccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30464062 6 + 172585720 aaccct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29872283 6 - 170955103 acccca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      64969 6 +   1495729 aaccct
i macNem1.NW_012012100v1   C 0 I 195
s cerAty1.NW_012002535v1     123850 6 -    863181 aaccct
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29245549 6 -  71996105 acccta
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2976450 6 -   3067355 acccta
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     438763 6 -   1771730 actgtg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     114615 6 -    383796 atccca
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e panPan2.chr6             30433348 88 + 173848474 I

a score=182336.000000
s hg38.chr6_GL000254v2_alt  1117275 62 +   4827813 tctctacaaaaaatacagaaattagccaggcatggtggcgcgaacctctagtcccagctact
s gorGor5.CYUI01015250v1    6121452 62 +   6154872 tctctacaaaaaatacagaaattagccaggcatggtggagcgaacctctagtcccagctact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796787 62 + 122973662 tctctacaaaaaatacaaaaattagtccggcatgatggagcacacctatactcccagctact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30464068 61 + 172585720 -ctctacaaaaaatacaaaaattagcccggcatggtggagcacagcaatactcccagctact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29872289 62 - 170955103 tctctacaaaatgtacaaaaattacccaggcttggtggtgcaaacctctagtcccagctact
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     123856 61 -    863181 -ctctacaaaaaatacgaaaattagccctgcatagttgagcacagcaatactcccagctact
i cerAty1.NW_012002535v1   C 0 I 45
s chlSab2.chr17            29245555 62 -  71996105 tctctacaaaaagtacaaaaattacccaggcacggtggtgcaaacctctagtcccacctact
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2976456 62 -   3067355 tctccacaaaaagtacaaaaattacccaggcatggtggtgcaaacctctagtccgagctact
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     438769 62 -   1771730 tctctatgaaaaatataaaaagtagccaggcatggtgacactaacctctagtctccgctatt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     114621 62 -    383796 tctctacgaaaaatataaaaattagccaggcatggtgacaccaacctctagtctcagctact
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e macNem1.NW_012012100v1      64975 195 +   1495729 I
e panPan2.chr6             30433348 88 + 173848474 I

a score=36471.000000
s hg38.chr6_GL000254v2_alt  1117337 22 +   4827813 caagaggcctagaagggaggaa
s gorGor5.CYUI01015250v1    6121514 22 +   6154872 caagaggcctagaagggaggaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796849 21 + 122973662 tgggaggctgaggtgggtgga-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30464129 21 + 172585720 tgggtggctgaggtgggttg-a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29872351 22 - 170955103 taaggggccgaggtgggaggaa
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29245617 22 -  71996105 caagaggccgaggtatgaggaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2976518 22 -   3067355 caagagaccgaggtgggaggaa
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     438831 22 -   1771730 tgagaagccaaggtgagaggaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     114683 22 -    383796 tgagaagccgaggtgagaggaa
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e cerAty1.NW_012002535v1     123917 45 -    863181 I
e macNem1.NW_012012100v1      64975 195 +   1495729 I
e panPan2.chr6             30433348 88 + 173848474 I

a score=68487.000000
s hg38.chr6_GL000254v2_alt  1117359 25 +   4827813 ttgcttaagcctggcaggtagaggc
s panPan2.chr6             30433436 24 + 173848474 tcgcttgagcctgggaggttgagg-
i panPan2.chr6             I 88 C 0
s gorGor5.CYUI01015250v1    6121536 25 +   6154872 ttgcttaagcctggcaggtagaggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796870 24 + 122973662 tcgcttgatcctgggaggttgagg-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30464150 24 + 172585720 tcgcttgaacctgggaggttgagg-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29872373 25 - 170955103 ttgcttgagtgtggcaggtcaaggc
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29245639 25 -  71996105 ttgcttgagtctggcaggtcgaggc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2976540 25 -   3067355 ttgcttgagtctggcaggtcgaggc
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     438853 25 -   1771730 tcgcttgagcctggcaagtcaaggc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     114705 25 -    383796 tctcttgagcctggcaggtcaaggc
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e cerAty1.NW_012002535v1     123917 45 -    863181 I
e macNem1.NW_012012100v1      64975 195 +   1495729 I

a score=210208.000000
s hg38.chr6_GL000254v2_alt  1117384 55 +   4827813 tgaagtgagttgtgtttgtgccactgcatttcagtccaggtgacaaagtgaaacc
s panPan2.chr6             30433460 55 + 173848474 tacagtgagctgtgtttgtgccactgcactgaagcctgggtgatggagtgagacc
i panPan2.chr6             C 0 I 32
s gorGor5.CYUI01015250v1    6121561 55 +   6154872 tgaagtgggttgtgtttgtgccactgcatttcagtccaggtgacaaagtgaaacc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796894 55 + 122973662 tacagtgagctgtgtttgtgccactgcactcaagcctgagtgacagagtaagacc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30464174 55 + 172585720 tagagtgagctgtatttgtgccactgcactcaagcctgggtgacagagtgagacc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29872398 55 - 170955103 tgaagtgaactgtgtttatgccactgcatttcagcccaggtgacagacagagact
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     123962 55 -    863181 tacagtgagctgtgtttgtgccactgcactcaagcctgggtgacagagtgagacc
i cerAty1.NW_012002535v1   I 45 C 0
s chlSab2.chr17            29245664 55 -  71996105 tgaagcgaactgtgtttatgccactgcatttcagcccaggtgacagactgagacc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2976565 55 -   3067355 tgaagtgagctgtatttatgccactgcatttcagcccaggtgacagactgagacc
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     438878 55 -   1771730 tgaagtgaaatgtatttgtgccactgcatttcagcccaagtgacagaacgagaca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     114730 55 -    383796 tgaagtgagatgtgtttgtgccactgcatttcagcccaagtgaaagagcgagatc
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e macNem1.NW_012012100v1      64975 195 +   1495729 I

a score=-3438.000000
s hg38.chr6_GL000254v2_alt  1117439 5 +   4827813 atgtt-
s gorGor5.CYUI01015250v1    6121616 5 +   6154872 atgtt-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796949 4 + 122973662 -cggt-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30464229 4 + 172585720 -tggt-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29872453 4 - 170955103 -ctgt-
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     124017 4 -    863181 -tggt-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29245719 4 -  71996105 -ctgt-
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2976620 4 -   3067355 -ttgt-
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     438933 5 -   1771730 -ctatt
i cebCap1.NW_016107755v1   C 0 I 43
s aotNan1.NW_018496904v1     114785 5 -    383796 -ctatt
i aotNan1.NW_018496904v1   C 0 I 43
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e macNem1.NW_012012100v1      64975 195 +   1495729 I
e panPan2.chr6             30433515 32 + 173848474 I

a score=2961.000000
s hg38.chr6_GL000254v2_alt  1117444  9 +   4827813 aaaaacaaa---
s gorGor5.CYUI01015250v1    6121621  9 +   6154872 aaaaacaaa---
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796953  9 + 122973662 ctaaaaTAA---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30464233  9 + 172585720 ctgaaaaaa---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29872457  9 - 170955103 ttcaaaaaa---
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     124021  9 -    863181 ctaaaaaCA---
i cerAty1.NW_012002535v1   C 0 I 19
s chlSab2.chr17            29245723  9 -  71996105 ttcaaaaaa---
i chlSab2.chr17            C 0 I 3
s colAng1.NW_012115566v1    2976624 12 -   3067355 ttcaaaaacaaa
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     114790 43 -    383796 I
e cebCap1.NW_016107755v1     438938 43 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e macNem1.NW_012012100v1      64975 195 +   1495729 I
e panPan2.chr6             30433515 32 + 173848474 I

a score=3741.000000
s hg38.chr6_GL000254v2_alt  1117453 4 +   4827813 caaa
s gorGor5.CYUI01015250v1    6121630 4 +   6154872 caaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796962 4 + 122973662 CAAG
i nomLeu3.chr1a            C 0 I 12
s rheMac8.chr4             30464242 4 + 172585720 caaG
i rheMac8.chr4             C 0 I 13
s macFas5.chr4             29872466 4 - 170955103 aaaa
i macFas5.chr4             C 0 I 3
s chlSab2.chr17            29245735 4 -  71996105 aaaa
i chlSab2.chr17            I 3 I 2
s colAng1.NW_012115566v1    2976636 4 -   3067355 CAGA
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     114790 43 -    383796 I
e cebCap1.NW_016107755v1     438938 43 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e cerAty1.NW_012002535v1     124030 19 -    863181 I
e macNem1.NW_012012100v1      64975 195 +   1495729 I
e panPan2.chr6             30433515 32 + 173848474 I

a score=600.000000
s hg38.chr6_GL000254v2_alt  1117457 1 +   4827813 c
s gorGor5.CYUI01015250v1    6121634 1 +   6154872 c
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796978 1 + 122973662 C
i nomLeu3.chr1a            I 12 C 0
s colAng1.NW_012115566v1    2976640 1 -   3067355 C
i colAng1.NW_012115566v1   C 0 I 29
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     114790 43 -    383796 I
e cebCap1.NW_016107755v1     438938 43 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e chlSab2.chr17            29245739 2 -  71996105 I
e cerAty1.NW_012002535v1     124030 19 -    863181 I
e macNem1.NW_012012100v1      64975 195 +   1495729 I
e macFas5.chr4             29872470 3 - 170955103 I
e rheMac8.chr4             30464246 13 + 172585720 I
e panPan2.chr6             30433515 32 + 173848474 I

a score=3447.000000
s hg38.chr6_GL000254v2_alt  1117458 8 +   4827813 aaacaaac
s gorGor5.CYUI01015250v1    6121635 7 +   6154872 aaacaaa-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796979 7 + 122973662 AAACAAA-
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29872473 7 - 170955103 aaaaaaa-
i macFas5.chr4             I 3 C 0
s chlSab2.chr17            29245741 7 -  71996105 aaaaaaa-
i chlSab2.chr17            I 2 I 17
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     114790 43 -    383796 I
e cebCap1.NW_016107755v1     438938 43 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2976641 29 -   3067355 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e cerAty1.NW_012002535v1     124030 19 -    863181 I
e macNem1.NW_012012100v1      64975 195 +   1495729 I
e rheMac8.chr4             30464246 13 + 172585720 I
e panPan2.chr6             30433515 32 + 173848474 I

a score=950.000000
s hg38.chr6_GL000254v2_alt  1117466 6 +   4827813 aaaaac
s gorGor5.CYUI01015250v1    6121642 3 +   6154872 ---aaC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30464259 4 + 172585720 --AAAC
i rheMac8.chr4             I 13 I 1
s macFas5.chr4             29872480 4 - 170955103 --aaaa
i macFas5.chr4             C 0 I 26
s chlSab2.chr17            29245765 4 -  71996105 --AAAC
i chlSab2.chr17            I 17 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     114790 43 -    383796 I
e cebCap1.NW_016107755v1     438938 43 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2976641 29 -   3067355 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e cerAty1.NW_012002535v1     124030 19 -    863181 I
e macNem1.NW_012012100v1      64975 195 +   1495729 I
e nomLeu3.chr1a            74796986 0 + 122973662 C
e panPan2.chr6             30433515 32 + 173848474 I

a score=1179.000000
s hg38.chr6_GL000254v2_alt  1117472 1 +   4827813 a
s gorGor5.CYUI01015250v1    6121645 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4             30464264 1 + 172585720 A
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29872510 1 - 170955103 G
i macFas5.chr4             I 26 C 0
s macNem1.NW_012012100v1      65170 1 +   1495729 A
i macNem1.NW_012012100v1   I 195 C 0
s chlSab2.chr17            29245769 1 -  71996105 A
i chlSab2.chr17            C 0 I 1
s aotNan1.NW_018496904v1     114833 1 -    383796 A
i aotNan1.NW_018496904v1   I 43 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e cebCap1.NW_016107755v1     438938 43 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2976641 29 -   3067355 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T
e cerAty1.NW_012002535v1     124030 19 -    863181 I
e nomLeu3.chr1a            74796986 0 + 122973662 C
e panPan2.chr6             30433515 32 + 173848474 I

a score=28948.000000
s hg38.chr6_GL000254v2_alt  1117473 10 +   4827813 aGAGA-CTTTT
s panPan2.chr6             30433547 10 + 173848474 AGAGA-TTTCC
i panPan2.chr6             I 32 C 0
s gorGor5.CYUI01015250v1    6121646  9 +   6154872 -GAGA-CTTTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796986  9 + 122973662 -GAGA-CTTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30464265 10 + 172585720 AGAGA-TTTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29872511 11 - 170955103 AGAGACTTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      65171 10 +   1495729 AGAGA-TTTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     124049 10 -    863181 AGAGA-TTTCC
i cerAty1.NW_012002535v1   I 19 C 0
s chlSab2.chr17            29245771 11 -  71996105 AGAGACTTTTC
i chlSab2.chr17            I 1 C 0
s cebCap1.NW_016107755v1     438981 10 -   1771730 AGAAA-CTTTC
i cebCap1.NW_016107755v1   I 43 C 0
s aotNan1.NW_018496904v1     114834 10 -    383796 AGAAA-CTTTC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2976641 29 -   3067355 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T

a score=576703.000000
s hg38.chr6_GL000254v2_alt  1117483 133 +   4827813 TAAAACTTAGTAAGAATATAGGGGCATACAGCAAATTCAAGACACACATTCACCAACAGTTCTTGCTTTGCTCAGTACAGTATTGACTGAAACACATGCATAACAGAACTGTGGAAAATCAGGGCTATCTACA
s panPan2.chr6             30433557 131 + 173848474 TAAAACTTAGTAAAAATATAAAGGCACACACTAAATTCAAGTCACACACCCTTTTGGAATTCTTGATTTGCTCATTACAGTACTGACTGAAACG--TGCATATCAGAGCTGTGAAAAATCAAGGCTATCTACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6121655 133 +   6154872 TAAAACTTAGTAAGAATATAGGGGCATACAGCAAATTCAAGACACACATTCACCAATAGTTCTTGCTTTGCTTAGTATAGTATTGACTGAAACACATGCATATCAGAACTGTGGAAAATCAGGGCTATCTACA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74796995 132 + 122973662 TAAAACTTAGTAAAAATGTAACAGCATACACCAAATTCAAGACACACATCCACCTGCAATTCTTGATTTGCTCAGTACAGTATTGACTGAAACACATGCATATCAGAACTGTGAAAAATCA-GGCTATCTACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30464275 128 + 172585720 TAAAACTTAGTAAAAATATAAT-----ACACTAAATTCAAGTAACACATCCACCTGCAATTCTTGGTTTGCTCAGTACAGTATTGACTGAAACATACACATATCAGAGCTGTGAAAAATCAAGGCTATCCACG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29872522 129 - 170955103 TAAAACTTAGTAACAATATAAGA----ACATCAAATTCAAGACAAACATTCACCGACAGTTCTTGGTTTGCTCAGTacagtattgactgaaacacatgcatatcagaactgtgtaaaatcagggctatctACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      65181 133 +   1495729 TATCACTTAGTAAAAATATAAAGGCATACACCACATTCAAGACACACATCCTCCTGCAGTTCTTGCTTTGCTCAGTACAGTATTGACTGAAGCACATGCATATCAGAACTGTGAAAAATCAAGGCTGTCTACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     124059 128 -    863181 TAAAACTTAGTAAAAATATAAT-----ACACTAAATTCAAGTCACACCTCCTCCTGCAATTCTTGATTTGCTCAGTACAGTATTGACTGAAACATAGGCATATCAGAGCTGTGAAAAATCAAGGCTATCAATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29245782 128 -  71996105 TAAAACGTAGTAAGAATATAAGGGCATACATCAAATTCAAGACAAACATTCACCAGCAGTTCTTGGTTTGCTCAGTACAATATTGACTGAAACCTGTA-----CTGAGCTGTGGAAAATCAAGGCTATCTACA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2976670 133 -   3067355 TAAAATTTAGTAAGAATATAAGGGCATACATCAAATTCAAGACAAACATTCACCAGCAGTTTTTGGTTTGCTCCGTACAGCATTGACTGAAACACTTGCATATCAGAAGTGTGGAAAATCAGGGCTCTCTACA
i colAng1.NW_012115566v1   I 29 C 0
s cebCap1.NW_016107755v1     438991 133 -   1771730 TAAAACTTGGTAAGAATGTAAGAGCATACAGCAAATTCGAGACACGCATTCACTAGCAGTTCTTGCTTTGCCCAGTACAGTATTGACTGGAAGACATGCATATCAGAACTGTGGAAAATCAGGGCAATCTACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     114844 133 -    383796 TAACACTTAGTAAGAATATAAGAGCATATAGCAATTTCAAGACACACCTTCACCAGCAGTTCCTGCTTTGCTCAGCACAGGATCGACTGAAACACATACACATCAGAACTGTGGAAAATCAGGGTTATCTACA
i aotNan1.NW_018496904v1   C 0 T 66395
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T

a score=1516147.000000
s hg38.chr6_GL000254v2_alt  1117616 418 +   4827813 CGTGTTTCTGTTATT-TT-CTATGTATAC-------------TACATACAGCCAATAATATTAAAATGTCACAAATTGACAAACCTGGGTGGCAGCTTCACAAAGA-TTTCTTATAATTCTCTA--TTTTTTCTTCTAGCTAGAACTACCTTATAATA-AAATTTGTGAAGTGAATCCACAGAAATTGAGCAAAATAA-AAAGGAGTCGTTGAGTGTGAGGAAAGCTACAGAGAAGTAAAGACAGGTGGAGACATGACAATACTGAGCATGTTAGTGACCTTCACAGTAACTGACTTCCTGGAGGAGTGTGAGCTTAAGCCAGAATGAAG-TGATAGACCGTGAAAGACGGATGAAGGAGTAGGAGCTTCTGGAGGCAAACATGGTATGTGGTTGGCTGGATTGGGATATGTGGAGGGACTCTGAACA-TTCTGCTTTAG
s panPan2.chr6             30433688 421 + 173848474 TATATTTCTATTATT-TTTCTATGTCTAC-------------TACATATAGCCAATAATATTAAAATGTCGCCAATTGACAAACCTGGGTGGTGCCTTCACAAAGA-TTTTTTATAATTTTCTA--TTCTTTCTTCCAGCTGGAACTACTTTGAATTA-ATGTTTGTGAAGTGAATCCACAGGAACTGAGCAAAATAAGAAAAGAGTTATTGAGTGTGAGGAAAGCTGCACAGAGGTACAGACAGATGGAGAGATGACAATACTGAGCATGTCAGTGACCTTCACAGTAACAGACTTCCTGGAGGAGTGTGAGCGTGAGCCAGAATGAAGAGGATAAAATATAAAAGAGGGATGAAGGAGTGGGGACTTCAGGGGGCAAATATGGGATTGAGTAGGCCAGAATGGGAAGTGTGGATGGATTCTAAACA-TTCCGCTTTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6121788 419 +   6154872 CGTGTTTCTGTTATT-TTTCTACGTATAC-------------TACATACAGCCAATAATATTAAAATGTCACAAATTGACAAACCTCGGTGGCAGCTTCACAAAGA-TTTCTTATAATTCTCTA--TTTTTTCTTCTAGCTAGAACTACCTTATAACA-AAATTTGTGAAGTGAATCCACAGAAATTGAGCAAAATAA-AAAGGAGTCGTTGAGTGTGAGGAAAGCTGCAGAGAAGTAAAGACAGGTGGAGACATGACAATACTGAGCATGTTAGTGACCTTCACAGTAACTGACTTCCTGGAGGAGTGTGAGCTTAAGCCAGAATGAAG-TGATAGACCGTGAAAGACGGATGAAGGAGTAGGAGCTTCTGGAGGCAAACATGGTGTGTGGTTGGCTGGACTGGGATATGTGGAGGGACTCTGAACA-TTCTGCTTTAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74797127 421 + 122973662 TATATTTCTATTTTT-TT-CTGTGTATTC-------------TACATATAGCCAATAATATTAAAATGTCACCAATTGACAAACCTGGGTGGTGCCTTCACAAAGA-TTTTTTATAATTTTCTA--TTCTTTCTTCCAGCTGGAACTACTTCGAATTA-ATGTTTGTGAAGTGAATCCACAGGAACTGAGCAAAATAAGAAAAGAGTTATAGAGTGTGAGGAAAGCCATGGAGAGGTACAGACAGATGGAGAGATGACAATACTGAGCATGTCAGTGACCTTCACAGTAACAGACTTCCTGGAGGAGTGTGAGCTGGAGCCAGAATGAAGAGGATAAAATATAAAAGAGGGATGAAGGAGTGGGGACTTTGGGGGGCAAATATGGGATTGAGTGGGCCAGACTGGGAAGTGTGGATGGATTCTAAACATTTCCACTTTAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30464403 420 + 172585720 TATATTTCTATTATTTTT-CTATGTATAC-------------TACCTATAGACAATAATATTAAAATGTCACCAACAGACAAACCCGGGTGG-GCCTTCGCAAAGATTTTTTTATAATTCTCTA--ATCTTTCTTCCAGCTAGAACGATTTCAAATTA-ATATTTGTGAAGTGAATCCACAGGAACTGAGCAAAATAAGAAAATAATTATTGAGTGTGAGGAAAGCTACGGAGAGGTACAGACAGATGGAGAGATGATAATACTGAGCATGTTAGTGACCTTCACAGTAATAGACTTTCTGGAGGAGTGTGAGCTGGAGGCAGAATTAACTGAATAGAATAT-AAAGAGGAATGAAGGAATCTGGACTTCAGGGGGCAAATATGGGGTTGGGTGGGTTAGACTGGGAAGTGTGGATGGATTCTGGACA-TTCCACTTTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29872651 434 - 170955103 TGTATTTCTATTATT-TT-CTGTGTATTTCTATTATTTTCTGTGTACATAGCTCATAATGTTAAAATGTCCCGAATTGACAAAATTGAGTGGTGGCTTCACAAATA-TTTCTTATAATTCTCTA--TTTTTTCTTCCAGCTAGAACTAATTCACAGTATAAATTTGTGAAGTGAATCCACAGAAATTGAGCAAAATAAAAAAGGATTTATTGAGTGTGAGGAAAGCTGCAGAGAAGTAAAGACAGATAGAGAGACGACAATACTGAACATGTTAGTGACCTTCACAATAACAGATTTCCTGGAGGAGTGTGAGCTGGAGCCGGAATGAAGTGGATAGACCATGAAAGAGGGATGAAGGAGTAGGAACTTCTAGAGGAAAATATGGTGTGTGATTGGTCAGATTGGGAGATGTGGATGGATTCTGAACA-TTCTGCTTTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      65314 419 +   1495729 TACATTTCTGTTATTCTT-CTGTGTATAC-------------TACATACAGCCAATAATATTAAAATGTCACCAATTGACAAACCTGAGTGGTACCTTCACAAAGATTTTTTTATAA--CTCTA--TTCTTTCTTCCAGCTACAACTACTTTGAATTA-ATATTTGTGAAGTGAATCCACAGGAATCGAGCAAAATAAGAAAAGAGTTATTGAGTGTGAGGAAAGCTACGGAGAGGTACAGTCAGATGGAGTGATGACAATACTGAATATGTCAGTGACCTTCACAGTAACAGACCTTTTGGAGGAGAGTAAGCTGGAGCCAGAATGAAGTGGATAGAATAT-AAAGACGGATGAAGGAGTGGGGACTTCAGGGAGCAAATATGGGGTTGGGTGGGTTAGACTGGGAAGTGTGGATGGATTCTGGACA-TTCCGTTTTAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     124187 410 -    863181 TATATTTCTATTATTTTT-CTATGTATAC-------------TACATATAGACAATAATATTA----------AATTGACAAACCCGGGTAG-GCCTTCCCAAAGATTTTTTTATAATTCTCTA--ATCTTTCTTCCAGCTAGAACTACTTCGAATTA-ATAGTTGTGAAGTGAATCCACAGGAACTGAGCAAAATAAGAAAATAATTATTGAGTGTGAGGAAAGCTATGGAGAGGTACAGACAGATGGAGAGATGACAATACTGAGCATGTCAGTGACCTTCACAGTAACAGACTTTCTGGAGGAGAGTGAGCTGGAGGCAGAATTAAGTGAATAGAATAT-AAAGAGGGATGAAGGAATCTGGACTTCAGGGGGCAAATATGGGGTTGAGTGGGTTAGACTGGGAAGTGTGGATGGATTCTGGACA-TTCTGCTTTAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29245910 421 -  71996105 TGTATTTGTATTATT-TT-CTGTGTATAC-------------TACATATAGCCAATAATGTGAAAATGTCCCAAACTGACAAACCTGAGTGGCGACTTCACAAAGA-TTTCTTATAATTCTCTA--TTTTTACTTCCAGCTAGAACTAATTCATAATAAAAATTTGTGAAGTGAATCCATAGAAATTGAGCAAAATAAAAAAGGATTTATTGAGTGTAAGGAAAGTTGCAGAGAAGTAAAGACAGATGGAGAGATGACAATACCGAGCATGTTAGTGATCTTCACAATAACAGATTTCCTGGAGGTGTGTGAGCTGGAGCCAGAACGAAATGGATAGACTGTGAAAGAGGGATGAAGGAGCAGGAACTTCTGGAGGTAAATATGGCGTGTGTTTGGCCAGATTGGGAGGTGTGGATGGACTCTGAACA-TTCTGCTTTAT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115566v1    2976803 406 -   3067355 TGTATTTCTATTATT-TG-CTGTGTATAC-------------TACATATAGCCAATAATGTTAAAATGTCCCAGATTGACAAACCTGAGTGGTGGCTTCACAAAGA-TTTCTTACAATTCTCTA--TTTTTACTTCCAGCTAGAACTAATTCATAATAAAAATTTGTGAAGTGAGTCCATAGAAATTGAGCAAAATAAAAAAGGATTTATTGAGTGTGAGGAAAGCTGCAGAGAAGTAAGGACAGATGGAGAGATG---ATACTGAGCATGTTAGTGACCTTCACAATAACAGATTTCCTGGAGGAGTGTGAGCTGGAGCCAGAACGAAGTGGATAGACTGTGAAAGAGGGATGAAGGAGTAGGAACTTC------------TGGCGTGTGTTTGGCCAGATTGGGAGGTGTGGATGGACTCTGAACA-TTCTGCTTTAT
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     439124 415 -   1771730 TGTATTTCTATTCTT-TT-CTGTGTATAC-------------C-TGTATAGCCAATAATACTAACATGTCATAAATTGACAAACCTGGGTGGCAGCTTCACAAAGA-TTTCTTATAATTCTCTATTTTTTTTCTTCCAGCTAGAACTACTTCATGGTA-AAATTTGTGAAGTGAATCCACAGAAACTGAGCAAAATGAAAAATGAGTTATTGAGTGTGAGGAGGGCTGCAGAGAAGTAAAGACAGATGGAGAGATGACAACTCTAAGCGTGTCTGTGACTTTCGCAGTAACAGGCTTCCTGGAGGAGTGT-AGCT-----CACAATGAAGTAGACAGACTGTGAAAGAGGAATGAAGGAGTACGAGTTTCCGGAGGCAAATGTGGTGTGGGGTTGGCCGGATTGGGAGGTGTGGATGGATTCTGAACA-TTCTGCTTTAG
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     114977 66395 -    383796 T
e calJac3.chr4             30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1     103236 46679 +    273075 T

a score=1658047.000000
s hg38.chr6_GL000254v2_alt  1118034 349 +   4827813 GTCCAGCAC-TAGAGAAAGAGGACTCATCTTTATTTAGCACCTTCCACAATCTGTAGAGAAA---TCTGAAACATTGC-AAAAGAAGATATATGAATGGCCAGT-----tcagggaaaaatgcaaagtaaaaccacagtgagaaaccactaagcaaccattagaatggctaaaattaaaatgattaataactataaatgctagcaaggatgtggaacaatctgtactctcctccattgcctataggaatataaaacatccattttgaaaatcaatttcatatcatctaataaagttaaacaagctagtcctctacagctaccatttccactcctaggtatatactcaagagaaatgaag
s panPan2.chr6             30434109 350 + 173848474 GTCTAGCACTTAGAGAAAGAGAAATCATGTTTGTTTAGCTCCTTCCACAATCTTTAGAGAAATCTTCTGAAACATTAC-AAaa-aagacacatgaatggccaatagtcatcagggaaaaatgcaaagtaaaaccacagcgagaaaccactaagcactgattagaatggctgaaatttaagtgattaataaatataaatgttgtcaaggatgtgaaacag-------tctcatccactgcctataagaatataaaacagacactctgaaaatcacttttatatcatctaataaagttaaacaagctagtactctatggctagcatttccactcctaggtatttactcaagtgaaataaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6122207 349 +   6154872 GTCCAGCAC-TAGAGAAAGAGGACTCATCTTTATTTAGCACCTTCCACAATCTGTAGAGAAA---TCTGAAACATTGC-AAAAGAAGATATATGAATGGCCAGT-----tcagggaaaaatgcaaagtaaaaccacagtgagaaaccactaagcaaccattagaatggctaaaattaaaatgattaataactataaatgctagcaaggatgtggaacaatctgtactctcctccattgcctataggaatataaaacatccattttgaaaatcaatttcatatcatctaataaagttaaacaagctagtcctctacagctaccatttccactcctaggtatatactcaagagaaatgaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74797548 350 + 122973662 GTCTAGCACTTAGGGAAGGAGAAATCACGTTTATTTAGCTCCTTCCACAATCTTTAGAGAAATCTTCTGaaacattac-aaaa-aagacacatgaatggccaatagtcatcagggaaaaatgcaaagtaaaaccacagtgagaaaccactaagcacttattagaatggctgaaatttaagtgattaataaatataaatgttgtcaaggatgtgaaacag-------tctcatccactgcctataagaatataaaacagccactctgaaaatcagttttatatcatctaataaagttaaacaagctagtactctatggctagcatttccactcctaggtatttactcaagtgaaataaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30464823 350 + 172585720 GTCTAGCACTTACAGAAAGAGAAATCATGTTTATTTAGCTCCTTCCACAATCTTTAGAGAAATCTTCTGAAACATCAC-AAAA-AAAGTATACAAACGGtcaacagtcatcagggaaaaacgcaaagtaaaaccacagtgagaaaacactaagtgcttattagaatggctgaaatttcaatgattaatacatataaatgttggcaaggatgtgaaacag-------tctcatccattgcctataagaatatgaaacagccactctgaaaatcagttttgtatcatctgataaagttaaacaagctagtgctctatggctagcatttccactcctaggtatttactcaacagaaataaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29873085 353 - 170955103 GTCCAGCAC-TAGAGAAAGAGAACTCATGTTTATTTAACACCTTCCACAATCTGTAGAGAAA---TCTgaaacattac-aaaagaagatatatgaatggccaattgtcttcagggaaaaacacaaagtaaaaccacagtgagaaaccactaagcaaccattcaaaaggctaaatttaaaatgattaataactataaatgttggcaaggatgttgaacat-ctgtactctcatccattgcctataggaatataaaacaaccactttgaaaatcagttttgtatgatgtaataaagttaaacaagctagtaccgtatggctaccatttccattcctaagtatttactcaagagaaatgaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      65733 349 +   1495729 GTCTAGCACTTACAGAAAGAGAAATCACATTTATTTATCTCCTTCCACAATCTTTAGAGAAATC-TCTgaaacattac-aaaa-aagatatacaaacagccaatggtcctcagggaaaattgcaaagtaaaaccacagtgagaaaccactaagtgcttattagaatggctgaaatttcaatgattaataaatataaatgttggcaaggatgtgaaacag-------tctcatccgttgcctataagaatatgaaacagccactctgaaagtcagttttgtatcatctgatgaagttaaacaagttagtactctatggctagcatttccactcctaagtttttactccagagaaataaag
i macNem1.NW_012012100v1   C 0 I 78
s cerAty1.NW_012002535v1     124597 350 -    863181 GTCTAGCACTTACAGAAAGAGAAATCACGTTTATTTGGCTCCTTCCACAATCTTTAGAGAAATCTTCTgaaacatcac-aaaa-aaggtatacaaatggtcaacagtcatcagggaaaaatgcaaagtaaaaccgcggtgagaaaccactaagtgcttattagaatggctgaaatttcaatgattaatacatataaatgttggcaaggatgtgaaacag-------tctcatccattgcctataagaatatgaaacagccactctgaaaatcagttttgtatcatctgataaagttaaacaagctagtactctatggctagcatttccactcctaggtatttactcaacagaaataaag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29246331 353 -  71996105 GTCCAGCAC-TAGAGAAAGAGAACTCATGTTTATCTAGCACCTTCCACAATCTGTAGAGAAA---TCTgaaacattacaaaaa-aagatatatgaatggccaattgtcttcagggaaaaacacaaagtaaaaccacagtgagaaaccactaagcaaccattcaaatggctaaatttaaaatgattaataactataaatgttggcaaggatgttgaacaatctgtgctctcatccattacctataggaatataaaacagccactttgaaaatcagttttgtatcatgtaataaagttaaacaacctagtactctacggctacc-tttccactcctaggtatttactcaagagaaatgaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      56557 350 +    273075 GTCCAGCAC-TAGAGAAAGAGAACTCATGTTTATTTAGCACCTTCCACAATCTGTAGAGAAA---TCTGAAACATTAC-AAAA-ATGATATATGAATGGCCAATTgtcttcagggaaaa--acaaagtaaaaccacagtgagaaaccactaagcaaccattcaaatggctaaatttaaaatgattaataactataaatgttggcaaggatgttgaacaatctgtgctctcatccattacctataggaatataaaacagccactttgaaaatcagttttgtatcatgtaataaagttaaacaacctagtactctacggctacc-tttccactcctaggtatttactcaagagaaatgaag
i manLeu1.NW_012101121v1   T 46679 C 0
s colAng1.NW_012115566v1    2977209 353 -   3067355 GTCCAGCAC-TAGAGAAAGAGAACTCATGTTTATTTAACACCTTCCACAATCTGTAAAGAAA---TCTgaaacattacaaaaa-aagatatatgaatggccaattgtcttcagggaaaaacacaaagtaaaaccacagtgagaaaccactaagcaaccattcaaatggctaaatttaaaatgattaataactagaaatgttggcaaggatgttgaacaatctgtactctcatccattacctataggaatataaaacagccactttgaaaatcagttttgtatcatgtaataaagttaaacaacctagtactctacagctacc-tttccactcctaggtatttactcaagagaaatgaag
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     439539 352 -   1771730 ATCCAGCACTTAGAGAAAGAGAACTCATGTTTATTTAGCACCTTCCACAATCTGTAaagata---tctgaaacatgaccaaca-aagagacatgaatggacaattgtcttcagggaaaaatgcaacataaaaccacaatgagaaaccactaagcaaccattagaatggctaaaa---gaaaaattaaaaactataaatgttggcaaggatgtggaacaatctgtgctctcatccattgcctataggaatagaaaacagccactttgaaaatcagttttgtatcatctaataaagttaaacaaactagtactctatagctaccatttccactcctaggtatttactcaagagaaatgaag
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     114977 66395 -    383796 T
e calJac3.chr4             30281384 10711 + 171630274 I

a score=24127.000000
s hg38.chr6_GL000254v2_alt  1118383 7 +   4827813 attttgt
s panPan2.chr6             30434459 7 + 173848474 attatgt
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01015250v1    6122556 7 +   6154872 attttgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74797898 7 + 122973662 attatgt
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             30465173 7 + 172585720 attatgt
i rheMac8.chr4             C 0 I 63534
s macFas5.chr4             29873438 7 - 170955103 atttttt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     124947 7 -    863181 attatgt
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29246684 7 -  71996105 attctgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      56907 7 +    273075 attctgt
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2977562 7 -   3067355 attctgt
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     439891 7 -   1771730 attttct
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     114977 66395 -    383796 T
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1      66082 78 +   1495729 I

a score=202383.000000
s hg38.chr6_GL000254v2_alt  1118390 54 +   4827813 cgataatccctgcataaaaatgttcatagtttctttatttataatagtaaaaaa
s panPan2.chr6             30434467 54 + 173848474 caagaatccctgtacaataatatccatagttcctttatttgtaacaataaaaaa
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01015250v1    6122563 54 +   6154872 cgataatccctgcataaaaatgttcatagtttctttatttataatagtaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74797906 48 + 122973662 caagaatccctgtacaataatgtccatagttcctttattt------gtaaaaaa
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30528714 54 + 172585720 caagaatccctgtacaataatgtccatagttcctttatttgtaacaataaaaaa
i rheMac8.chr4             I 63534 C 0
s macFas5.chr4             29873445 54 - 170955103 caaaaatccgtctataagaatgttcacagtttctttatttataatagcaaaaaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     124955 54 -    863181 caagaatccctgcacaagtgtttccagagtacctttatttgtaacaataaaaaa
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29246691 54 -  71996105 caaaaatccctgtataagaatgttcatagtttctttatttatcatagtaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      56914 54 +    273075 caaaaatccctgtataagaatgttcatagtttctttatttataatagtaaaaaa
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2977569 54 -   3067355 caaaaatccctgtataagaatgttcatagtttctttatttataatagtaaaaaa
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     439898 54 -   1771730 caaaaatccctgtagaaggatgttcatagttccttaatttacaatagtaaaaaa
i cebCap1.NW_016107755v1   C 0 N 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     114977 66395 -    383796 T
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1      66082 78 +   1495729 I

a score=21329.000000
s hg38.chr6_GL000254v2_alt  1118444 14 +   4827813 caagaaataactgc
s panPan2.chr6             30434521 14 + 173848474 ccgtgaataccccc
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01015250v1    6122617 14 +   6154872 taagaaataactgc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74797954 14 + 122973662 ccaataataccccc
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             30528768 14 + 172585720 ctgggaataccccc
i rheMac8.chr4             C 0 T 63532
s macFas5.chr4             29873499 12 - 170955103 tc--aaataactgc
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     125009 14 -    863181 cgaagaatagaccc
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29246745 14 -  71996105 tcagaaaaaactgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      56968 14 +    273075 tcagaaataattgc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2977623 14 -   3067355 tcagaaataactgc
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     325048 14 -   1771730 tcagtaatgcccgc
i cebCap1.NW_016107755v1   N 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     114977 66395 -    383796 T
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1      66082 78 +   1495729 I

a score=826041.000000
s hg38.chr6_GL000254v2_alt  1118458 188 +   4827813 caatgtac--aaaaatcatgattcagtcatacaatggaatattatcagcaatgaaaatgaaagaactactgatacgtgcaccaacatggattgatcacataggtattacaacaagcgcaaaaagccagatacaagggaggccatatgggatgagtagatttgtatgaagttttaaaacaggaagaactgt
s panPan2.chr6             30434536 190 + 173848474 caatgtacaaaaaaattgtgactcagtgatacaatgcaatactaccagcattaaaaatgaatgaattactgatacatgcaacaagctgggcagaccacatagatattacaccaagtgcaaaaagctaggcacaagggaggccatatgggatgaatggatacgtatgaagttttgaaacaggaagagctac
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01015250v1    6122631 188 +   6154872 caatgtac--aaaaatcatgattcagtcatacaatggaatattatcagcaatgaaaatgaaagaactactgatacatgcaccaacatggattggtcacataggtattacaacaagcgcaaaaagccagatacaagtgaggccatatgggatgagtagatttgtatgaagttttaaaacaggaagaactgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74797969 190 + 122973662 caatgtacaaaaaaattgtgactcaatgatacaacgcaatactaccagcattaaaaatgaacgaattactgatacatgcaacaaactgggtagaccatatagatattacaccaagtgcaaaaagccaggcacaagggaggccatatgggatgaatggatatgtatgaagttttgaaacaggaagagctat
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30465250 188 + 172585720 caatgtac--aaaaaaagtgattcaatcttacaatggaatactaccagcaataaaaatgaatgaactactgatacatgcaacaacctgggtggaccgcatagatattacaccaagtgcaaaaagccagacacaagggaggccatatgggatgagtggatatgtatgaagttttaaaacaggaacagctac
i rheMac8.chr4             T 63532 C 0
s macFas5.chr4             29873511 184 - 170955103 caatgtgc--aacaatcatgatcaaatcatacgatgtaatattatcagcaataaa----aatgaactactgatacgtgcaccaacatggatacatcacatagatattaccccaatcgcaaaaagccaggcacaggggaggccgtaagggatgagtagatttgtgagaaatattaaaacaggaagaattac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      66160 190 +   1495729 caatgtacaaaaaaattgtgattcaatcatacaatggaatactaccagcaataaaaatgaatgaactactgatacatgcaacaacccggttggaccacatagatattacaccaagtgccaaaagccagacacaagggaggccacatggcatgagtggatacgtatgaagttttaaaacaggaagaactac
i macNem1.NW_012012100v1   I 78 C 0
s cerAty1.NW_012002535v1     125024 188 -    863181 caatgtac--aaaaaaagtgattcaatcttacaatggaatactaccagcaataaaaataaatgaactactgatacatgcaataacctgggtggaccacatagatattacaccaagtgcaaaaagccagatacaagggaggccatatgggatgagtggatacatatgaagttttaaaacaggaagagctac
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29246759 188 -  71996105 caatgtac--aaaaatcatgattcattcatacaatggaatattatcagaaataaaaatgaatgaactactgatacatgcaacaacatggattgatcacataattattatgccaagtgcaaaaagccagacatacgggagaccatacaagatgagtagatttgtacaaagtgttaaaacaggaagaactgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      56982 188 +    273075 caatgtac--aaaaatcatgattcattcatacaatggaatattatcagaaataaaaatgaatgaactactgatacatgcaacaacacggattgatcacataattattatgccaagtgcaaaaagccagacacacgggagaccatacaggatgagtagatttgtacgaagtgttaaaacaggaagaactgc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2977637 155 -   3067355 caatgtac--aaaaatcgtgattcattcatacaatggaatattatcagaaataaaaatgaatgaactactgatacatgcaacaacatggattgatcacataattattatgccaagtgcaaaaagtcagacac---------------------------------gaagtgttaaaacaggaagaactgc
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     325062 189 -   1771730 caatgcac-aaaaaaatgtgattcaatcatacaatggagtactatcagcaataaaaatgaattaactactgatacatgcaacaacatggatggatcacataggtattacacaaagcacaaaaagtcagacacaagggaggccatattaggtgaatgtatttgtatgaagttttaaaacaggaagaactat
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     114977 66395 -    383796 T
e calJac3.chr4             30281384 10711 + 171630274 I

a score=185108.000000
s hg38.chr6_GL000254v2_alt  1118646 31 +   4827813 gctatcctgacagccgtcagatcaatggctg
s panPan2.chr6             30434726 31 + 173848474 tctatcatgatagtcatcagatcaatggctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6122819 31 +   6154872 gctatcctgatagccatcagatcaatggctg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74798159 31 + 122973662 tctatcatgatagtcatcagatcaatggctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30465438 31 + 172585720 tctatcatggtagtcatcagatcaatggctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29873695 31 - 170955103 gctatcatgatagtcatcagatcaatggctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      66350 31 +   1495729 tctgtcatgatagtcatcacatcaatggctg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     125212 31 -    863181 tctatcatgatagtcatcaaatcaatggctg
i cerAty1.NW_012002535v1   C 0 I 34
s chlSab2.chr17            29246947 31 -  71996105 gctatcatgatagccatcaaatcaatagctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      57170 31 +    273075 gctatcatgatagccatcaaatcaatggctg
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2977792 31 -   3067355 gctatcatgatagccatcaaatcaatggctg
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     325251 31 -   1771730 gttatcatggtaatcatcagaccaatggcta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      48582 31 -    383796 tctctcatgatagtcatcagatcaatggttg
i aotNan1.NW_018496904v1   T 66395 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I

a score=25806.000000
s hg38.chr6_GL000254v2_alt  1118677 4 +   4827813 ctgg
s panPan2.chr6             30434757 4 + 173848474 ctgg
i panPan2.chr6             C 0 I 72
s gorGor5.CYUI01015250v1    6122850 4 +   6154872 ctgg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74798190 4 + 122973662 ctgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30465469 4 + 172585720 ctgg
i rheMac8.chr4             C 0 I 1851
s macFas5.chr4             29873726 4 - 170955103 ctgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      66381 4 +   1495729 ctgg
i macNem1.NW_012012100v1   C 0 I 1862
s chlSab2.chr17            29246978 4 -  71996105 ctgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      57201 4 +    273075 ctgg
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2977823 4 -   3067355 ctgg
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     325282 4 -   1771730 ctgg
i cebCap1.NW_016107755v1   C 0 N 0
s aotNan1.NW_018496904v1      48613 4 -    383796 ctgg
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e cerAty1.NW_012002535v1     125243 34 -    863181 I

a score=64402.000000
s hg38.chr6_GL000254v2_alt  1118681 28 +   4827813 aggcatggaagctgagttgaagggagaa
s gorGor5.CYUI01015250v1    6122854 28 +   6154872 aggcatggaagctgagttgaagggagaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74798194 27 + 122973662 -ggaaagggggctaatttgaacgcagaa
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29873730 28 - 170955103 ggacagggaagcggagttgaagggagaa
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29246982 28 -  71996105 gggcggagaagctgagttgaagggagaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      57205 28 +    273075 gggcggagaagctgagttgaagggagaa
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2977827 28 -   3067355 gggcagggaagctgagttgaagggagaa
i colAng1.NW_012115566v1   C 0 C 0
s cebCap1.NW_016107755v1     558810 28 -   1771730 aggaagggggactgaggtgaagggagaa
i cebCap1.NW_016107755v1   N 0 C 0
s aotNan1.NW_018496904v1      48617 28 -    383796 aggaagggggactgaggtgaagggagaa
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e cerAty1.NW_012002535v1     125243 34 -    863181 I
e macNem1.NW_012012100v1      66385 1862 +   1495729 I
e rheMac8.chr4             30465473 1851 + 172585720 I
e panPan2.chr6             30434761 72 + 173848474 I

a score=112365.000000
s hg38.chr6_GL000254v2_alt  1118709 42 +   4827813 aa--agggatctttatgtacattgatagtggcaagagtaatatg-
s gorGor5.CYUI01015250v1    6122882 41 +   6154872 aa--agggat-tttatgtacactgatagtggcaagagtaatatg-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74798221 44 + 122973662 aaatagagaactttgtgtatcttcatagtggcatgggtgctatg-
i nomLeu3.chr1a            C 0 I 1
s macFas5.chr4             29873758 42 - 170955103 aa--aggggtctttgtgtacattgatagtggcaagagtgatatg-
i macFas5.chr4             C 0 I 1
s cerAty1.NW_012002535v1     125277 42 -    863181 aa--aaagaactttgtgtatcttgatagtggcatgggtgatatg-
i cerAty1.NW_012002535v1   I 34 I 1
s chlSab2.chr17            29247010 42 -  71996105 aa--agggatctttgtgtacattgatagtggcaagagtgatatg-
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012101121v1      57233 42 +    273075 aa--agggatctttgtgtacattgatagtggcaagagtgatatg-
i manLeu1.NW_012101121v1   C 0 I 1
s colAng1.NW_012115566v1    2977855 42 -   3067355 aa--agggatctttgtgtacattgatagtggcaagagtgatatg-
i colAng1.NW_012115566v1   C 0 I 1
s cebCap1.NW_016107755v1     558838 43 -   1771730 ga--agggaattttctgtatcttgacagtgccatgggtgatatag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      48645 43 -    383796 ga--aggaaattttctgtatcttgacagtgccatgggtgatatag
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1      66385 1862 +   1495729 I
e rheMac8.chr4             30465473 1851 + 172585720 I
e panPan2.chr6             30434761 72 + 173848474 I

a score=130760.000000
s hg38.chr6_GL000254v2_alt  1118751 33 +   4827813 ctgtattggtcaaaattcattgataaatttgat
s panPan2.chr6             30434833 33 + 173848474 ctgtatttgtcaaacttcattgatgaatttgat
i panPan2.chr6             I 72 C 0
s gorGor5.CYUI01015250v1    6122923 33 +   6154872 ctgtatttgtcaaaattcattgattaatttgat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74798266 33 + 122973662 ctgtatttgtcaaaattcattgatgaatttgat
i nomLeu3.chr1a            I 1 C 0
s macFas5.chr4             29873801 33 - 170955103 ctgtatttgtcagaattcattgataagtttgat
i macFas5.chr4             I 1 C 0
s cerAty1.NW_012002535v1     125320 33 -    863181 ctgtatttgtcgaaattcattgatgaatttgat
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29247053 24 -  71996105 ctgtatttgtcaaaattca---------ttgat
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012101121v1      57276 33 +    273075 ctgtatttgtcaaaattcattgataaagttgat
i manLeu1.NW_012101121v1   I 1 C 0
s colAng1.NW_012115566v1    2977898 33 -   3067355 ctatatttgtcaaaattcactgataaagttgat
i colAng1.NW_012115566v1   I 1 C 0
s cebCap1.NW_016107755v1     558881 33 -   1771730 ctgtatttgtcaaaattcattgaTGAATTTGAT
i cebCap1.NW_016107755v1   C 0 N 0
s aotNan1.NW_018496904v1      48688 33 -    383796 ctgtatttgtcagaatttgttgctgaatttgat
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1      66385 1862 +   1495729 I
e rheMac8.chr4             30465473 1851 + 172585720 I

a score=188351.000000
s hg38.chr6_GL000254v2_alt  1118784 62 +   4827813 gaagatctgattatttt--ggtatatg--tacattttataagcttaaaaaGCTTATAATAAAAATT
s panPan2.chr6             30434866 62 + 173848474 acagatctgatcatttc--agtatatg--aaaattttacAAGTTTAAAATGCTTACAATAAAAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6122956 62 +   6154872 gaagatctgattatttt--ggtatatg--tacattttataagtttaaaaaaCTTATAATAAAAATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74798299 62 + 122973662 acagatctgatcatttc--agtatacg--taaattttacAAGTTTAAAATGCTTACAATAAAAATT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29873834 62 - 170955103 gaagatctgattatttt--ggtatata--tacattttaTAAGTTTAAAGTGCTTATAACAAAAATT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     125353 64 -    863181 gcagatctgatcatttc--agtatatatgtaaattttacAAGTTTAAAATGCTTACAATAAAAATT
i cerAty1.NW_012002535v1   C 0 I 1693
s chlSab2.chr17            29247077 62 -  71996105 gaagatttgcttatttt--ggtaaatg--taaattttaTAAGTTTAAAATGCTTataataaaaatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      57309 62 +    273075 gaagatttgcttatttt--ggtaaatg--taaattttaTAAGTTTAAAATGCTTataataaaaatt
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2977931 62 -   3067355 gaagatttgcttatttt--ggtaaatg--taaattttaTAAGTTTAAAATGCTTataataaaaatt
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018496904v1      48721 63 -    383796 -aaaatctgatttttttggggtatatg--taaattTAACAAATTTataatgctaataataacaatt
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1      66385 1862 +   1495729 I
e rheMac8.chr4             30465473 1851 + 172585720 I

a score=126136.000000
s hg38.chr6_GL000254v2_alt  1118846 51 +   4827813 ATAAAGTTGCTGAT-AAAAATAATAATTAaaaatattagcaacaaaatccaa
s panPan2.chr6             30434928 52 + 173848474 TAAATGTTAGTAATAAAAAATAGTAATTGaaaatattagcaacaaaatccaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6123018 51 +   6154872 ATAAAGTTGCTGAT-AAAAATAATAATTAaaaatattagcaacaaaatccaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74798361 52 + 122973662 TAAATGTTAGTAATAAAAAATAGTAATTGaaaatattagcaacaaaatccaa
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29873896 51 - 170955103 ACAGTGTCGCTGAC-ATAAATAATAATTAAAAATATTAGCAACCAAATCCAA
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29247139 48 -  71996105 ---atgttagtgat-aaaaataataatTAaaaatattagcaaccaaatccaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      57371 48 +    273075 ---atgttagtgat-aaaaataataatTAaaaatattagcaaccaaatccaa
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2977993 48 -   3067355 ---atgttagtgat-aaaaataataatTAaaaacattagcaaccaaatccaa
i colAng1.NW_012115566v1   C 0 C 0
s aotNan1.NW_018496904v1      48784 51 -    383796 ttaatgttagtgat-aaaaatagtaatTAaaaatattatcaaccaaatccaa
i aotNan1.NW_018496904v1   C 0 I 5287
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e cerAty1.NW_012002535v1     125417 1693 -    863181 I
e macNem1.NW_012012100v1      66385 1862 +   1495729 I
e rheMac8.chr4             30465473 1851 + 172585720 I

a score=5348.000000
s hg38.chr6_GL000254v2_alt  1118897 2 +   4827813 ca
s panPan2.chr6             30434980 2 + 173848474 ca
i panPan2.chr6             C 0 I 1414
s gorGor5.CYUI01015250v1    6123069 2 +   6154872 ca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74798413 2 + 122973662 ca
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29873947 2 - 170955103 CA
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29247187 2 -  71996105 ca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      57419 2 +    273075 ca
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2978041 2 -   3067355 ca
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      48835 5287 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e cerAty1.NW_012002535v1     125417 1693 -    863181 I
e macNem1.NW_012012100v1      66385 1862 +   1495729 I
e rheMac8.chr4             30465473 1851 + 172585720 I

a score=35728.000000
s hg38.chr6_GL000254v2_alt  1118899 28 +   4827813 gtataccaaaagaataatacaccatgat
s gorGor5.CYUI01015250v1    6123071 28 +   6154872 gtataccaaaagaataatacaccatgat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74798415 25 + 122973662 acagatcaa---aacaatacaccataat
i nomLeu3.chr1a            C 0 I 1463
s macFas5.chr4             29873949 28 - 170955103 ATGCACCAAAAGAATAATAAAACATGTT
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29247189 28 -  71996105 gcgcaccaaaaggataatacaccatgat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      57421 28 +    273075 gcgcaccaaaaggataatacaccatgat
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2978043 28 -   3067355 gcgcaccaaaaggataatgcaccatgat
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      48835 5287 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e cerAty1.NW_012002535v1     125417 1693 -    863181 I
e macNem1.NW_012012100v1      66385 1862 +   1495729 I
e rheMac8.chr4             30465473 1851 + 172585720 I
e panPan2.chr6             30434982 1414 + 173848474 I

a score=274013.000000
s hg38.chr6_GL000254v2_alt  1118927 241 +   4827813 ATGTccatatatggcaaacacacagctaacattatactgaatagggacaagcttatagcctctcctccaagatctggaagaaggctaagactcccactttcatcacttttattctacacagcactagaagtcctagcaagagcaatcagccaagaggaggaaataaagggcatccaaattggaaaggagaaagccaacttagccttattcgcaaatggcataatcttttactcagaaaaaa
s gorGor5.CYUI01015250v1    6123099 241 +   6154872 ATGTccatatatggcaaacacacagctaacattatactgaatagggacaagcttatagcctctcctccaagatctggaagaaggctaagactcccactttcatcacttttatcctacacagcactagaagtcctagcaagagcaatcagccaagaggaggaaataaagggcatccaaattggaaaggagaaagccaacttagccttattcgcaaatggcataatcttttacttagaaaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29873977 241 - 170955103 ACGTccatatatgacaaacatatagctaacattattctgaatggagacaaacttacagtctctcctctaagatctggaacaagacaaagactcccactttcatcacctttattccacgtagtgctagaagttctagccagagcaatcaggcaagaagaggaaataaagggcatccaaatagcataggagaaagtcaactgacccttattcgcaaatgacatgatcttttactcagaaaaac
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29247217 240 -  71996105 ATGTccatatataaaatacacacagctaacagtatagtgaatggagacaagtttatagcctcctctgtaagatctagaaggaggcacagactcccactttcaacacttttattctatccagtactagaagtcctagccagagcaatcaggcaag-tgaggaaataaagggcatccaagtcagataggagaaagccaacttagccttatttgcaagtgacatgatcttttacttagaaaaaa
i chlSab2.chr17            C 0 I 1992
s manLeu1.NW_012101121v1      57449 240 +    273075 ATGTccatatataaaaaacacacagctaacagtatagtgaatggagacaagtttatagcctcctctgtaagatctggaaggaggcacagattcccactttcaccacttttattctatccagtactagaagtcctagccagagcaatcaggcaag-tgaggaaataaagggcatccaagtcagataggagaaagccaacttagccttattcgcaagtgacatgatcttttacttagaaaaaa
i manLeu1.NW_012101121v1   C 0 I 1985
s colAng1.NW_012115566v1    2978071 240 -   3067355 ATGTccatatatgaaaaacacacagctaacagtatagtgaatggagacaagtttatagcctcctctgtaagatctggaaggaagcacatactcccactttcaccacttttattctatccagtactagaagtcctagccagagcaatcaggcaag-tgaggaaataaagggcatccaagtcagataggagaaagccaacttagccttattcgcaagtgacatgatcttttacttagaaaaaa
i colAng1.NW_012115566v1   C 0 I 1977
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      48835 5287 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e cerAty1.NW_012002535v1     125417 1693 -    863181 I
e macNem1.NW_012012100v1      66385 1862 +   1495729 I
e rheMac8.chr4             30465473 1851 + 172585720 I
e nomLeu3.chr1a            74798440 1463 + 122973662 I
e panPan2.chr6             30434982 1414 + 173848474 I

a score=1830.000000
s hg38.chr6_GL000254v2_alt  1119168 9 +   4827813 ctaaatatt
s gorGor5.CYUI01015250v1    6123340 9 +   6154872 ctaaatatt
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29874218 9 - 170955103 ctgaagatt
i macFas5.chr4             C 0 I 1993
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      48835 5287 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2978311 1977 -   3067355 I
e manLeu1.NW_012101121v1      57689 1985 +    273075 I
e chlSab2.chr17            29247457 1992 -  71996105 I
e cerAty1.NW_012002535v1     125417 1693 -    863181 I
e macNem1.NW_012012100v1      66385 1862 +   1495729 I
e rheMac8.chr4             30465473 1851 + 172585720 I
e nomLeu3.chr1a            74798440 1463 + 122973662 I
e panPan2.chr6             30434982 1414 + 173848474 I

a score=242798.000000
s hg38.chr6_GL000254v2_alt  1119177 2678 +   4827813 ggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcggatcacgaggtcaggagatcgagaccatcctggctaaaattgtgaaaccccgtctctactaaaaatacaaaaaaaaaaaaaaaa--------ttagctggtcgtggtggcgggcgcctgtagtcccagctactcaggaggctgagacaggagaatggcgtgaacccaggaggtggagcttgcagtgagccgagatcgcgccactgcactccagcctggatgacagagcgagactccatctcaaaaaaagaaaaaaa--aagaaagaaagaaaaatctaaatattccaccaaataaatggtgagaactaataagcaaattcagtaaaattacaggatacaaaatcaatgtgcaaactttcagagcatttatatatacaagcaccatataatctgaagaagaaatcaagaaagcaaaactatttacaaatcataaagaggataaaataactaagaatcaatttaccccaggaagtaaaacaaaaactataaggcactgatgaaggaaattgaagagtacacaaaactggaagagccaggcgcagtggcacatacctgtaatcctggcactttgggatgatgagacaggagaattgtttgagcctgggagttcaagactagcctgggaaacatagtgagaccttgtctctaaggaaaaaaaataaaacacacaaattgggagaattaatattgttaaatattaatttaaaaaatgaaacacataaatttcatgcacataaattgggagaatattgttaaaatgttcatactacccaaagcaatttacagattcaattcaatccctatcaaaataccaatatcattattcacagaaatagaaaaaattatgaaattcatatggaatcataaaatatcccaaatagccaaagcaatcgtgagcaagaagaacaaagctagaggtatcacacttcctgaattcagaatacaatataaagttatagtaaccaaatcagcatggtgctggcataaaaacagacgcatagactaatggaatacaaaagagaactcacaataaatccatgcattgatagccaactcatttttggtaaag--------aatatacaatggagaaagaacaaaagcaacaatggagaataaatggagctgggaaaatgctaccagatgcagaagaataccactagaaccctgtctcccaccatatacagaaatcaactcaaaatggattaaagatttaaatgtaagtcccaaaactataaaactactagaagaatgcttacaggaaacactccagacatgggtctgggcaaagactttatggctaagacctcaaaagcacaggcaacaaaaataaaatagacaagtgggactatattaaactaaatagcttcagcacagcaaatgaaacaatcaacagaatgaagaggcaacctgttgaatagagaaaatatttgctatgtattcatccagcaaggaactaacatctagaatatacaaggaacttaaaaaactcagcagtaaaaa-cacaaataatccaattaaaaaatggataaagtgtctgaatagatgtttctcaaaaggagacatacaaatggtcaacaggtatacgaaaaacactcaaccttattaaatatcaggaaaatgcaaatcaaaactataatgaaatatcatcttatcctatttagaatggctactaataggaaataaaaaataatggatagtggtgagcatgtggagaaatgggaactgttgtacactcttgggaaagtaagtacagcaattatggaaatcagtataatgatttctcaaaaaacaaaaaatagaactactattggatccaacaactccactcatgggtatttatataaaggaaaagaaatcaatatatcaaaagactacctgcacccccaggtttattgaagcactattcacagtagcgaagttatgaaatcaatgggtgaattcatcaatgggtgaatgaataaatggtggtatatatatacacaatggaatgcaattcagccataaaaaagaatgaaatcctgtcagttgcagaaacatggatgtaaccaaaggtcattacgttaggtgaaataagccaagcaaggaaagacaaataccacatgttgtcactaatatgtgcgagccaaaaaggttaatcttagggaggtagagagagtagaatgacagttcccagaaactgggaagaatgtaggggtgggaaaatatagagatgcaggttaatggatgcaaatgtccaattatatagagaaaataagttctaatgtttgatagcacagcagactgactaaagttaacaaaaatgtatatttcaaaatagctataagagtggatttggctgggcgtggtggctcatgcctgtgatcccagcactttgggaggccgaggagggtggatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaaaaaaaaaaaattagccgggcgtggtggtgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacccgggaggcgaagcttgcagtgagccgagatcgtgccactgcactccagtctgggtgatggtgtgagactccatctcaaaaaacaaaa
s gorGor5.CYUI01015250v1    6123349 2689 +   6154872 ggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcggatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaaaaaaaaaaaaaaaaaaaattagctggtcgtggtggcgg-cgcctgtagtcccagctactcaggaggctgagacaggagaatggcgtgaacccaggaggtggagcttgcagtgagccgagatcgcgccactgcactccagcctggatgacagagcgagactccatctcaaaaaaagaaaaaaagaaagaaagaaagaaaaaactaaatattccaccaaataaatggtgagaactaataagcaaattcagtaaaattacaggatacaaaatcaatgtgcaaactttcagagcatttatatatacaagcaccatataatctgaagaagaaatcaagaaagcaaaactatttacaaatcataaagaggataaaataactaagaatcaatttaccccaggaagtaaaacaaaaactataaggcactgatgaaggaaattgaagagtacacaaa-ctggaagagctaggcgcagtggcacatacctgtaatcctggcactttgggatgatgagacaggagaattgtttgagcctgggagttcaagactagcctgggaaacatagtgagaccttgtctctaaggaaaaaaaataaaacacacaaattgggagaattaatattgttaaatattaatttaaaaaatgaaacacataaatttcatgcacataaattgggagaatattgttaaaatgttcatactacccaaagcaatttacagattcaattcaatccctatcaaaataccaatatcattattcacagaaatagaaaaaattatgaaattcatatggaatcgtaaa-tatcccaaatagccaaagcaatcatgagcaagaagaacaaagctagaggcatcacacttcctgaatccagaatacaatataaagttatagtaaccaaatcagcatggtgctggcataaaaacagacacatagactaatggaatacaaaagagaactcacaataaatccatgcattgatagccaactcatttttggtaaaggaactgagaatatacaatggagaaagaacaaaagcaacaatggagaataaatggagctggaaaaatgctaccagatgcagaagaataccactagaaccctgtctctcaccatatacagaaatcaactcaaaatggattaaagatttaaatgtaagtcccaaaactataaaactactagaagaatgcttacaggaaacactccagacatgggtctaggcaaagactttatggctaagacctcaaaagcacaggcaacaaaaataaaatagacaagtgggactacattaaactaaatagcttcagcacagcaaatgaaacaatcaacagaatgaagaggcaacctgttgaatagagaaaatatttgctatgtattcatccaacaaggaactaacatctagaatatacaaggaacttaaaaaactcagcagtaaaaaacacaaataatccaattaaaaaatggacaaagtgtctgaacagatgtttctcaaaaggagacgtacaaaaggtcaacaggcatatgaaaaacactcaaccttattaaatatcaggaaaatgcaaatcaaaactataatgaaatatcatcttatcctatttagaatggctactaataggaaataaaaaataatggatagtggtgggcatgtggagaaatgggaactgttgtacactcttgggaaagtaagtacagcaattatggaaatcagtataatgatttctcaaaaaacaaaaaatagaactactattggatccaataactccactcatgggtatttatataaaggaaaagaaatcaatatatcaaaagactacctgcacccc-aggtttattgaagcactattcacagtagcgaagttatgaaatcaatgggtgaattcatcaatgggtgaatgaataaatggtggtatatata--cacaatggaatgcaattcagccataaaaaagaatgaaatcctgtcagttgcagaaacatggatgtaaccaaaggtcattacgttaggtgaagtaagccaagcaaggaaagacaaatacctcatgttgtcactaatatgtgcgagccaaaaaggttaatcttagggaggtagagagagtagaatgacagttcccagaaactgggaagaatgtaggggtgggaaaatatagagatgcaggttaatggatgcaaatgtccaattatatagagaaaataagttctaatgtttgatagcacagcagactgactaaagttaacaaaa-tgtatatttcaaaatagctataagagtggatttggctgggcgtggtggct-atgcctgtgatcccagcactttgggaggccgaggagggtggatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaaaaaaaaaaaattagccgggcgtggtggtgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacccgggaggcgaagcttgcagtgagccgagatcgtgccactgcactccagtctgggcaatggtgtgagactccacctcaaaaaacaaaa
i gorGor5.CYUI01015250v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      48835 5287 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2978311 1977 -   3067355 I
e manLeu1.NW_012101121v1      57689 1985 +    273075 I
e chlSab2.chr17            29247457 1992 -  71996105 I
e cerAty1.NW_012002535v1     125417 1693 -    863181 I
e macNem1.NW_012012100v1      66385 1862 +   1495729 I
e macFas5.chr4             29874227 1993 - 170955103 I
e rheMac8.chr4             30465473 1851 + 172585720 I
e nomLeu3.chr1a            74798440 1463 + 122973662 I
e panPan2.chr6             30434982 1414 + 173848474 I

a score=300.000000
s hg38.chr6_GL000254v2_alt  1121855 1 +   4827813 c
s gorGor5.CYUI01015250v1    6126038 1 +   6154872 c
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29876220 1 - 170955103 c
i macFas5.chr4             I 1993 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      48835 5287 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2978311 1977 -   3067355 I
e manLeu1.NW_012101121v1      57689 1985 +    273075 I
e chlSab2.chr17            29247457 1992 -  71996105 I
e cerAty1.NW_012002535v1     125417 1693 -    863181 I
e macNem1.NW_012012100v1      66385 1862 +   1495729 I
e rheMac8.chr4             30465473 1851 + 172585720 I
e nomLeu3.chr1a            74798440 1463 + 122973662 I
e panPan2.chr6             30434982 1414 + 173848474 I

a score=1442.000000
s hg38.chr6_GL000254v2_alt  1121856  9 +   4827813 aaaacaaaa--
s gorGor5.CYUI01015250v1    6126039  9 +   6154872 aaaacaaaa--
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74799903  9 + 122973662 aaaacagct--
i nomLeu3.chr1a            I 1463 I 2
s macFas5.chr4             29876221 11 - 170955103 aaaacagctat
i macFas5.chr4             C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      48835 5287 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115566v1    2978311 1977 -   3067355 I
e manLeu1.NW_012101121v1      57689 1985 +    273075 I
e chlSab2.chr17            29247457 1992 -  71996105 I
e cerAty1.NW_012002535v1     125417 1693 -    863181 I
e macNem1.NW_012012100v1      66385 1862 +   1495729 I
e rheMac8.chr4             30465473 1851 + 172585720 I
e panPan2.chr6             30434982 1414 + 173848474 I

a score=3822.000000
s hg38.chr6_GL000254v2_alt  1121865 2 +   4827813 aa
s panPan2.chr6             30436396 2 + 173848474 aa
i panPan2.chr6             I 1414 C 0
s gorGor5.CYUI01015250v1    6126048 2 +   6154872 aa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74799914 2 + 122973662 aa
i nomLeu3.chr1a            I 2 C 0
s macFas5.chr4             29876232 2 - 170955103 aa
i macFas5.chr4             C 0 C 0
s manLeu1.NW_012101121v1      59674 2 +    273075 aa
i manLeu1.NW_012101121v1   I 1985 C 0
s colAng1.NW_012115566v1    2980288 2 -   3067355 aa
i colAng1.NW_012115566v1   I 1977 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      48835 5287 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e chlSab2.chr17            29247457 1992 -  71996105 I
e cerAty1.NW_012002535v1     125417 1693 -    863181 I
e macNem1.NW_012012100v1      66385 1862 +   1495729 I
e rheMac8.chr4             30465473 1851 + 172585720 I

a score=11636.000000
s hg38.chr6_GL000254v2_alt  1121867 6 +   4827813 gagtga
s panPan2.chr6             30436398 6 + 173848474 gagtgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6126050 6 +   6154872 gaatga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74799916 6 + 122973662 gaatgg
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29876234 6 - 170955103 tagtgg
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29249449 6 -  71996105 gagtgg
i chlSab2.chr17            I 1992 C 0
s manLeu1.NW_012101121v1      59676 6 +    273075 gagtgg
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115566v1    2980290 6 -   3067355 gagtgg
i colAng1.NW_012115566v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      48835 5287 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e cerAty1.NW_012002535v1     125417 1693 -    863181 I
e macNem1.NW_012012100v1      66385 1862 +   1495729 I
e rheMac8.chr4             30465473 1851 + 172585720 I

a score=358977.000000
s hg38.chr6_GL000254v2_alt  1121873 155 +   4827813 atttaaaatgttctcaacagaaagaaatgataaatgcttgaggtcatggataccctaaatatcttgact-gata---cacacattctatgcatgtatcaaaatgtcacatgtatcccataaatatgtacaaatattatgtaccaattttaaaaa-at--tta
s panPan2.chr6             30436404 159 + 173848474 attttaaatgttcccaacacaaggaaatgatacatgcttgaggtgatggattccctaaacaccctgacttgattat-tccacattctgtgcatgtatcaaatgatcacatgtgccccataaacatata-aaatgttaggtattacctttaaaaa-aTATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6126056 155 +   6154872 atttaaaatgttctcaacagaaagaaatgataaatgcttgaggtcatggataccctaaatatcttgact-gata---cacacattctatgcatgtatcaaaatgtcacatgtatcccataaatatgtacaaatattatgtaccaattttaaaaa-at--tta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74799922 159 + 122973662 attttaaatgttcccaacacaaggaaatgatacatgcttgaggtgatggattccctaaacaccctgacttgattat-tccacactctgtgcatgtatcaaatgatcacatgtgccccataaacatatacaaatgttatgtattaCCTTTAAAAATAT--TTT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29876240 155 - 170955103 atttaaaatgttcccaccacaaagaaatgataagtgcttgaggtgatggataccttaaatatcctgact-tattatacacacattctacgcatgtatcaaa---taacatatacctcataaatatgtacaaatattatgtaccaatttaaaaCATAT--TT-
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29249455 158 -  71996105 atttaaaatgttcccaacacaaagaaatgataaatgcttgaggtgatggatatcctaaatatcctgact-tattatacacacattctatgcatgtatcaaaacgtcacatgtatcccataaatatgtacaaatattatgcaccaattttaaaaaTAT--TT-
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012101121v1      59682 157 +    273075 atttaaaatgttctcaacacaaagaaatgataaatgcttgaggtgctggatatcctaaatatcctgact-tattatacatacattctatgcatgtatcaaaacatcacatgtatcccataaatatgtacaaatattatgcaccaa-tttaaaaaTAT--TT-
i manLeu1.NW_012101121v1   C 0 I 1
s colAng1.NW_012115566v1    2980296 158 -   3067355 atttaaaatgttcccaacacaaagaaatgataaatgcttgaggtgctggatatcccaaatatcctgact-tattatacacacattctatgcatgtatcaaaacatcacatgtatcccataaatatgtacaaatattatgcaccagtttaaaaaaTAT--TT-
i colAng1.NW_012115566v1   C 0 I 1
s cebCap1.NW_016107755v1     416639 151 -   1771730 atttcaaatgttcccaacacaaagaaatgataagtgcttgaggtgatggatatcctaaatatcctgact-tgt----tacacattctattcatttatcaaaatatcacatctacctcataaatatgtacaaa---tatatattaa-tttaaaaaTAT--TTT
i cebCap1.NW_016107755v1   N 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      48835 5287 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e cerAty1.NW_012002535v1     125417 1693 -    863181 I
e macNem1.NW_012012100v1      66385 1862 +   1495729 I
e rheMac8.chr4             30465473 1851 + 172585720 I

a score=29337.000000
s hg38.chr6_GL000254v2_alt  1122028 9 +   4827813 aaaaATAAA
s panPan2.chr6             30436563 9 + 173848474 TAAAATAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6126211 9 +   6154872 aaaaATAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74800081 9 + 122973662 TAAAATAAA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29876395 9 - 170955103 TAAAATAGA
i macFas5.chr4             C 0 I 2
s cerAty1.NW_012002535v1     127110 9 -    863181 aaaaataaa
i cerAty1.NW_012002535v1   I 1693 C 0
s chlSab2.chr17            29249614 9 -  71996105 AAAAATAAA
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012101121v1      59840 9 +    273075 AAAAATAAA
i manLeu1.NW_012101121v1   I 1 C 0
s colAng1.NW_012115566v1    2980455 9 -   3067355 AAAAATAAA
i colAng1.NW_012115566v1   I 1 N 0
s cebCap1.NW_016107755v1     416790 9 -   1771730 AAATATAAA
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      48835 5287 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e macNem1.NW_012012100v1      66385 1862 +   1495729 I
e rheMac8.chr4             30465473 1851 + 172585720 I

a score=7268.000000
s hg38.chr6_GL000254v2_alt  1122037 4 +   4827813 C--AAC
s panPan2.chr6             30436572 6 + 173848474 CTCAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6126220 4 +   6154872 C--AAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74800090 6 + 122973662 CTCAAC
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29876406 4 - 170955103 --CAAC
i macFas5.chr4             I 2 C 0
s macNem1.NW_012012100v1      68247 4 +   1495729 --CAAC
i macNem1.NW_012012100v1   I 1862 C 0
s cerAty1.NW_012002535v1     127119 3 -    863181 ---aaC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29249623 4 -  71996105 --CAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      59849 4 +    273075 --CAAC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      14988 4 -   1829203 --CAAC
i colAng1.NW_012115577v1   N 0 C 0
s cebCap1.NW_016107755v1     416799 6 -   1771730 CTGAAC
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      48835 5287 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e rheMac8.chr4             30465473 1851 + 172585720 I

a score=1777049.000000
s hg38.chr6_GL000254v2_alt  1122041 448 +   4827813 ACAATATGGGGCATTTAAAAAGGTACAAAAATTATGAGCATGATAAAAATTTGGCAAATA-TTTTCCTTTTTATTAAGAT---CTTTTTCATTCCATAAGTTTAAGGAGAATAAAGCCCATAAAGCATCAGAAGAAGTTGCTCTCCT--GAAAGAGACTCTTCTGCTCAGTTAAAAAGACAGAAACAGAATCACTGGAGTGAGTAGGACTTTGGAGAACTGCACAGCACCATGTCTTAGTGTCTGGGATTACAcagacttagg---gag--gaggcctcaccttccgggaagaactaaactttggttctctttctt-gttttttctattgcaagaccaaaattttagaaaaccaagagaaagatttcagccaaagggttgtactgtctattactctc-----------ttttattttttagaacatccattgtcaaagacgatccagactgttacaagaggaattgtgttc
s panPan2.chr6             30436578 424 + 173848474 ACAATATGGGACATTTTAAAAAGTACAAAAAT-ATGACCATGATAAAAATT-GGCAAATA-TTT-CCTTTTTATTAAGAT---C-----CACTTTGTAAGTTCAAGCAGAATGAAGCCCATACAGCATCAGAAGAGGTGGCTCTCCT--GA--GAGAATCTTCTCCCCAGTTAGAAAGGCAGAAACAGAATTCCTGGAGAAAGTAAGACTCTGGAGAACTGCACAGCACCTCTtcttggggtctggggttacccagatgtagg---gag--gg---ttcaccttctgggaaaaactaaacgttggttcttgttctt--tttttcttattccaagaccaaaaattgagaaaaccaagagaaagcaccaagccaaaggg--gta--------tactctc-----------ttttattttttagaatatccactaccaaggatgatccaCACtgttatgagatgaattgtgtcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6126224 438 +   6154872 ACAATATGGGGCATTTAAAAAGGTACAAAAATTATGAGCATGATAAAAATTTGGCAAATA-TTTTCCTTTTTATTAAGAT---CTTTTTCATTCCTTAAGTTTAAGGAGAATAAAGCCCATAAAGCATCAGAAGAAGTTGCTCTACT--GAAAGAGACTCTTCTGCTCAGTTAAAAAGACAGAAACAGAATCACTGGAGTGAGTAGGACTTTGGAGAACTGCACAGCACCAtgtcttagtgtctgggattacacagacttagg---gag--gaggcttcaccttccgggaagaactaaactttggttctctttctt-gttttttctattgcaagaccaaaattttagaaaaccaagagaaagagttcagccaaaggg--atg--------tactgtc-----------ttttattttttagaatatccatcgtcaaagatgatccagactgttacaagaggaattgtgttc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74800096 426 + 122973662 ACAATATGGGACATTTTAAAAAGTACAAAAAT-ATGACCATGATAAAAATT-GGCAAATA-TTT-CCTTTTTATCAAGAT---C-----CACTTAGTAATTTCAAGCAGAATGAAGCCCATACAGCATCAGAAGAGGTGGCTCTCTT--GA--GAGAATCTTCTCCCCAGTTAGAAAGGGAGAAGCAGAATTCCTGGAGAAAGTAAGACTTTGGAGAACTGCACAGCACCTCTTCTTGGtgtcttgggttacccagacttagg---gag--gg---ttcaccttctgggaaaaactaaacgttgattcttgttctttttttttcttattgcaagaccaaaaattcagaaaaccaagagaaagcatcaagccaaaggg--ata--------tactctc-----------ttttattttttagaatatccactaccaaggatgatccaCGCtgttatgagatgaattgtgtcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30467324 437 + 172585720 aCAATATGGGATATTTTAAATGGTACAAAAATTATGAGCATGGTAAAAATTTGGCAAATA-TTT-TCTTTTTATTAAGATCAACTTTTATATTCTGTAAGTCCCAGCAGAATGAAGCCCATACAGCATCAGAGGAGGTGGCTCTCCT--GA--GAGAATCTTCTTCCCAGTTAGAAAGGCAGAAACAGAATTCCTGGAGAAAGTAAGACTTTGGAGAACTGCATA-CACCTCTTCTTGATGTCTGGGATTACccagacttacg---gag--gg---ttcaccttcggggaaaaactgaactttggttcttgtccttttttgttcttatggcgagaccaaaatttcagaaaaccaagatgaagcactaagctaagggg--atg--------tactctc---------ttttattttttttcgaatacccactaccaagGATGATCTACTCtgttatgagatgaattgtgtcc
i rheMac8.chr4             I 1851 C 0
s macFas5.chr4             29876410 438 - 170955103 ACAATATGGGGCATTTTAAAAGGTACAAAAATTATGAGTGTGATAAAAATTTGGCTAATAGTTT-CCTTTTTATTAAGAT---CTTTTTCATTCTGTAAGTTTAAGGAGAATAAAGCCCATACAGCATCAGAAGAGGTTACTCTCCTGAGA--GAGAATCTTCTTCCCAGTTAAAAAGACAGAAATAGAATCATTAGAGTGAGTAGGACTTTGGGGAGCTGCACAGCACTACGTCTTAGTGTCTGGGATAACCCAGAGTTAGA---GAGAAGG---TTCACCTTCCAGGAAGAATTAGACTTCGGTTCTCTTTCTTGTTTGTTTCTATTGTAAGACCAAAATTTCAGAAAACCAAGAGAAACAGTTAAGCCAAAGCG--ATG--------TACTGTC-----------TTTTAGACTTTAGACTCTCCACAGCCAAAGATGAACCATACCTTTAGAAGAAGAATTGTGTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      68251 445 +   1495729 ACAATATGGGACATTTTAAACGGTACAAAAATAATGAGCGTATTAAAAATTTGGCAAATA-TTT-TCTTTTTATTAAGATCAACTTTTATCTTCTGTAAGTCCCAGCAGAATGAAGCCCATACAGCATCAGAGGAGGCGGCTCTCCT--GA--GAGAATCTTCTTCCCAGTTAGAAAGGCAGAAACAGAATTCCTGGAGAAAGTAAGACTTTGGAGAACTGCACAGCACCTCTTCTTGGTGTCTGGGATTACCCAGATTTAGG---GAG--GG---TTCACTTTCTGGGAAAAACAAAACTTTGCTTCTTGTCCTTTTTTGTTCTTATGGCAAGACCAAAATTTCAGAAAACCAAGATGAAGCACCAAGCTAAAGGG--ATG--------TTCTCTCTCTCTCT--TTTTTTTTTTTTTAGAATATCCACTACCAAGGATGATCCACACtgttatgagatgaattctgtcc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     127122 440 -    863181 ACAATATGGGATATTTTAAATGGTACAAAAATTATGAGCATGATAAAAATTTGGCAAATA-TTT-TCTTTTTATTAAGATCAACTTTTATCTTCTGTAAGTCCCAGCAGAATGAAGCCCATACAGAATCAGAGGAGGCGGCTCTCCT--GA--GAGAATCTTCTTCCCAGTTAGAAAGGCAGAAACAGAATTCCTGGAGAAAGTAAGACTTTGGAGAACTGCATA-CACCTCTTCTTGGTGTCTGGGATTACCCAGACTTAGGTTTTAG--TT---TTCACCTTCTGGGAAAAACTCAACTTTGGTTCTTGTCCTTTTTTGTTCTTATGGCAAGACCAAAATTTCAGAAAACCAAGATGAAGCACCAAGCTAAGGGG--ATG--------TACTCTC---------TTTTATTTTTTTTCGAATACCCACTACCAAGGATGATCCACTCtgttatgagatgaattgtgtcc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29249627 449 -  71996105 ACAATATGGGGCATTTTAAAAGGTACAAAAATTATGAGCATGATAAAAATTTGGCAAATATTTT-CCTTTATATTAACAT---CTTTTTCATTCTGTATGTTTAAGGAGAATAAAGTCCATACAGCATCAGAAGAGGTGGCTCTCCTGAGA--GAGAATCCTCTTCCCAGTTAAAAAGACAGAAACAGAATCATTGGAGTGAGTTGGACTATGGAGAACTGCACAGCACCACgtcttagtgtctgggattaccaagacttagggaggag--gg---ttcaccttccatgaagaactaaactttggttctctttcttgtttgttcgtattggaagatcaaaatttcagaaaaccaagagaaagaattcagccaaaggg--atg--------tactgtcttttactc-tctttaatttcttagaatatccactgccaaagatgatccagacagttacAAGAAGAATTGTGTTC
i chlSab2.chr17            C 0 I 792
s manLeu1.NW_012101121v1      59853 449 +    273075 ACAATATGGGGCATTTTAAAAGGTACAAAAATTATGAGCATGATAAAAATTTGGCAAATATTTT-CCTTTCTATTAACAT---CTTTTTCATTCTGTATGTTTAAGGAGAATAAAGTCCATATAGCATCAGAAGAGGTAGCTCTCCTGAGA--GAGAATCCTCTTCCCAGTTAAAAAGACAGAAACAGAATCACTGGAGTGAGTTGGACTTTGGAGAACTGCACAGCACCACGTCTTAGTGTCTGGGATGACCAAGACTTAGGGAGGAG--GG---TTCACCTTCCATGAAGAACTAAactttggttctctttcttgtctgttcgtattgcaagatcaaaatttcagaaaaccaagagaaagaattcagccataggg--atg--------tactgtcttttactc-tctttaatttcttagaatatccactgccaaagatgatccagacagttacAAGAAGAATTGTGTTC
i manLeu1.NW_012101121v1   C 0 I 791
s colAng1.NW_012115577v1      14992 447 -   1829203 ACAATATGGGACATTTTAAACAGTACAAAAATAATGAGCGTATTAAAAATTTGGCAAATA-TTT-TCTTTTTATTAAGATCAACTTTTATCTTTTGTAAGTCCCAGCAGAATGAAGCCCATACAGCATCAGAAGAAGTGGTTCTCCT--GA--AAGAATCTTCTTCCCAGTTGAAAAGGCAGAAACAGAATTCCTGGAGAAAGTAAGACTTTGGAGAACTGCACAGCACCTCTTCTTGGTGCCTGGGATTACCCAGATTTAGG---GAG--GG---TTCACCTTCCGGGAAAAACAAAACTTTGCTTCTTGTCCTTTTTTGTTCTTATGGCAAGACCAAAATTTCAGAAAACCAAGATGAAGCACCAAGCTAAAGGG--ATG--------TACTCTCTCTGTCTCTCTCTTTTTTTTTTAGAATATTCACTACCAAGCATGATCCATGCtgttatgcgatgaattgtgtcc
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     416805 428 -   1771730 ACAATATGGGTTATTAAAAAGGGTAC-TAAATTATTAACATGATAAAAATTCGGCAAATA-TTT-CCTTTTTATTAAAATCAACTTTCTCCTTCTGTATCTTTAAGGAAAATGATGTCCATACAGCATCAGAAGGAGATGCACTCCTGAGA--GAGAATCTTCTTTCCAGTTAAAAAGACAAAAATGGTATCACCGGAGTAAGCAGGGCTTTGGAGAACTACACAGCACTGGGCCCTCGTGAccaggggcagtcagatttagg----ag--gg---ctcaccttctgggaaaagctaaactttggctctctttctt------ttttattgtaagacc-aaatttcagaaaaccaaaagaaagagtccagctagaggg--atg--------tgctatc-----------ttttattT-TTAGAATATCCTCTGCCCAGGACGATTCAGACtgttgtgggataaattttgtcc
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      48835 5287 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I

a score=1095416.000000
s hg38.chr6_GL000254v2_alt  1122489 248 +   4827813 ctacgccaccaaaatccacatgttgaagccctatgttgagaaggc------agaagaagtggccatctacaagcaaaggaaagaggcctcagaagagatcaaccctgcagcaccttgaccttgcacctg-tggcctctgga------actgtgagacaacacatatttattatttaagtcacccagccttt--------------------ggtactttgttatggcagccctagcaaattaaaacaGGAATATTACCTTTTCTACCTTGTCCTATGTATG
s panPan2.chr6             30437002 244 + 173848474 ctccccaaccgaaattcatatgttgaagtcctatgttgagaagac------agaag---tggccatctacaagccaaggagagaggcctcaggaaaaagcaaccctgcagcaccttgacct-gcacctg-tagcctccaga------actgtgagacaatacatatttattattttactcacccagcatgt--------------------ggtactttgttatggtagccctagcaaattaaaacaGAAATATTACCTTTTCTACTCTGTCCTATGTATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6126662 248 +   6154872 ctacgccaccaaaatccacatgttgaagccctatgttcagaaggc------agaagaagtggccatctacaagcaaaggaaagaggcctcagaagagatcaaccctgcagcaccttgaccttgcacctg-tggcctccgga------actgtgagacaacacatatttattatttaagtcacccagccttt--------------------ggtactttgttatggcagccctagcaaattaaaacaGAAATATTACCTTTTCTACCTTGTCCTATGTATG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74800522 243 + 122973662 ctccctaaccgaaattcatatgttgaagccctatgtggagaagac------agaag---tgaccatctacaagccaaggagag-ggcctcagaacaaagcaaccctgcagcaccttgacct-gcacctg-tagcctccaga------actgtgagacaatacatatttattattttactcacccagcctgt--------------------ggtacttagttatggcagccctagcaaattaaaacaGAAATATTACCTTTTCTACCCTGTCCTATGTATC
i nomLeu3.chr1a            C 0 I 326
s rheMac8.chr4             30467761 265 + 172585720 ctccccaaccaaaattcatatgttgaagtcctCTGTtgagaagac------agaag---tgaccgtctacaagccaaggagagaggcctccaataaaagcaaccctgcagcagcttgaccttgtacctg-tagcctccaga------actgtgaaacaacaaatatttattattttactcacccagcctgtggtacttagttatggcctgcggtacttagttatggcagccctagcaaaTGAAAAGAGAAATTCTACCTTTTCTACTCTGTCCTATGTATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29876848 251 - 170955103 CTATGCCACCAAAATCCGTATGTTGAAACCCTATCTtgagaaggcagaaggagaag---tggccagctacaagccaaggaaagagacctcagaagaaataaactctgcagcaccttgaccttgcacctt-tagcctccaga------attgtgagacaataaacatttattacttaagtcacccagcattt--------------------ggtgcattattatggcagccctatcaaattaaaacaGAAATATTACCTTTTCTAACCTATCATGTCTAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      68696 246 +   1495729 ctccccaaccaaaattcatatgttgaagtcctGTGTtgagaagac------agaag---tggctgtctacaagccaaggagagaggcctcagaaaaaagcaactctgcagcagcttgaccttgcaccttgtagcctccaga------actgtgggacaacaagtatttattattttactcacccagcctgt--------------------ggtactttgttatggcagccctagcaaattaaaacaGAAGTATTACCTTTTCTACCCTGTCCTGCGTATC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     127562 239 -    863181 ttccccaaccaaaattcatatgttgaagtcctGTGTtgagaagac------agaag---tgactatctacaagctaaggagagaggcctccgataaaagcaaccctgcagcaccttgatcttg-------tagcctccaga------actgtgagacaacaaatatttattatttcactcacccagcctgt--------------------agtacttagttatggcagccctagcaaaTGAAAAGAGAAATATTACCTTTCCTACTCTGTCCTATGTATC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29250868 248 -  71996105 CTATGCCACCAAAATCCATATGTTGAAGCCCTGTGTtgagaagacaga---agaag---tggccatctacaagccaaggagagagggctcagaacaaatcaaccctgcagcaccttgactttgcacctg-tagcctctaga------actgtgagatgatacatatttattatttaagtcacccaggcttt--------------------ggtactttgttatggaagctctagcaaattaaaacaGAAATATTACCTTTTCTACCTTCTCCTGTGTATG
i chlSab2.chr17            I 792 C 0
s manLeu1.NW_012101121v1      61093 254 +    273075 CTATGCCACCAAAATCCATATGTTgaagtcctatgttgagaaaacaga---agaag---tggccatcaacaagccaaggagagagggctcagaacaaatcaaccctgcagcaccttgaccttgcacctg-tagcctctagaactgtgactgtgagatgatacatatttattatctaagtcacccagccttt--------------------ggtactttgttatggcagctctagcaaattaaaacaGAAATATTACCTTTTCTACCTTCTCCTATGTATG
i manLeu1.NW_012101121v1   I 791 C 0
s colAng1.NW_012115577v1      15439 236 -   1829203 ctccccaaccaaaatccatatgttgaagtcctatgttgagaagat------agaag---tgactatctacaagccaaggagagaggcctccgataaaagcaaccctgcagcaccttgaccttgtacctg-tagcctccaga------actgtgagacaacaaatatttattattttactcactcagccttg-----------------------------ttatggcagtcctagcaaattaaaacaGAAATATTACCTTTTCTACCCTGTCCTATGTATC
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     417233 241 -   1771730 ctcccctgccaaaatccttatgttgaaggcctatgttgggaagatgga---agaag---tggccatctataagccaaggagagaggtctcagaagaaatcaaccctgcagcaccttgaccttgcacctg-aatcctccaga------attgtgagacaa----tgcttactatttaagtcacccgg---gg--------------------ggtactttgttatggcagccctagcaaattCAAATGGAAATACTATCTTTTCTACCAAAGACTGTGTATA
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      48835 5287 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I

a score=1628103.000000
s hg38.chr6_GL000254v2_alt  1122737 380 +   4827813 AACATGAGATTTTTTTAGGAGTATGAATTACCTGAGATTTCAA---------AAGATAGAGTGAGGCAATTGAAAATAGATGATATAGGGTCATTTCCAAGCCTCTGAGTGTC---CCCTGGCCACCACAGAAAAATgaagatgttcccattccctttcagtttcacacaaagcaaaagttgtagacctaaactgacatagaatcgccaactgca-ttaatttatttgagataatgagggagctagttttgcccaaatttcacagaaagacgatgaac------aagtagtaagctaaagaggc--ttcttttgcaggggattgcaggtattatatgtttttctcctacttttaagataCATTTTCCTAAAAAGTTTTGTCTAGGAGTAAATGTCATCACT
s panPan2.chr6             30437246 372 + 173848474 AACATGAGACTTTTT-AAGAATATGAATTACCTGGGATTCCAA---------AACACAGAGTGAGTCAATGGAAAATAGATGATACAGGGTCATTTCCAAGCCTTTGTGGGTC---TCCTGGCCACCACACAAACATGTATGtgttcccatttcttttcagtttcacacagtgcaaaagttgtg----------gacatagaatcacaaactgtgtttaatttatttgagacattgagtgagctagttttgccctaattttatagaaagatgaggaacaatcataattactaaaccaaagaggc--tt-tttggcaggggatggcaggtactatg---ttttctcctccttTTAAAGTGCATTTTCCTAAAGAGTCTTGTCTAGGAGTAAATGTCATTACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6126910 380 +   6154872 AACATGAGATTTTTTTAGGAGTATGAATTACCTGAGATTTCAA---------AAGATAGAGTGAGGCAATTGAAAATAGATGATATAGGGTCATTTCCAAGCCTCTGAGTGTC---CCCTGGCCACCACAGAAAAATgaagatgttcccattccctttcagtttcacacaaagcaaaagttgtagacctaaactgacatagaatcgccaactgca-ttaatttatttgagataatgagggagctagttttgcccaaatttcacagaaagatgatgaac------aagtaGTAAGCTAAAGAGGC--TTCTTTTGCAGCGGATTGCAGGTATTATATGTTTTTCTCCTACTTTTAAGATACATTTTCCTAAAAAGTTTTGTCTAGGAGTAAATGTCATCACT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74801091 374 + 122973662 AACATGTGATTTTTTTAAGAATATGAATTGCCTGGGATTCCAA---------AACATAGAGTGAGTCAATGGAAAATGGATGATATAGGGTCATTTCCAAGCCTTGGTGGGTT---TCTTGGCCACCACACAAACATggatgtgtccccatttcttttcagtttcacacacagcaaaagttgtg----------gacacagaatcacaaactgtgtttaatttatttgagatactgagtgagctagttttgccctaattttatagaaagatgatgaacaatcataattgctagaccaaagaggc--tt-tttggtaggggattgcaggtatactatg-ttttctcctACTTTTAAGGTAC-TTTTCCTAAAGAGTCTTGTCTAGGAGTAAATGTCATCACT
i nomLeu3.chr1a            I 326 C 0
s rheMac8.chr4             30468026 369 + 172585720 AATATGTGATTTATTTAAGAATATGAATTACCTAGGACTCCAA-----------AACAGAGTGAGTCAATGGAAA-------ATACAGGGTCATTTCCAAGCCTTTGTGGGTT---TTCTGGCCACCACAAAAACAAggatgtgttcccatcttttttcagtttcacacagagcaaaagttgtggagatgagctgacatagaattacaaactatatttcatttatttgagatattgagtgaaatagttttgcccttattttatagaaagatgatgaacaatcataatt-----actaaagaggt--tt-tttggcaggggatggcagatac--tatg-ttttctcctACTTTTAAGGTACATCTTCCTAAAGAGTCTTGTCTAGGAGTAAATGTCATCACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29877099 396 - 170955103 AACATGAGA-TCTTTTAAGAGTATGAATTACCTGGGATTCCAAAGGATAGAGAGGATAGAGTGAGTCAATTGAAAATGGATGATATAAGGTCATTTTCAAGCTTCTGAGGGTC---CCCTGGCCACCACAGAAAAATGAAGACGTTCCCATTCTCTTTCGGTTTCACACAAAGGAAAAGCTGTAGACCTAAACTGACATAGAATCACCGACTGTATTTAATTTATTTGAAATGTTGAGGGAGCTAGTTTTGCCCTAACTTTACAGAAAGATGATGAACAATTACAATTAGTAAACTAAACAGGCTTTT-TTTGGCAGGGGATCACAGGTACTATATGTTTTTCTCCTTCCTTTAAGGTACATTCTCCTAAAAAGTTTTGTCTAGGAGTAAATGTCATCACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      68942 385 +   1495729 AACATGTGATTTTTTTAAGAGTATGAATTGCCTGTGATTCCAA---------AACATAGAGTGAGTCAATGGAAAATGGATGATATAGGGTCATTTCCAAGCCTTTGTGGGTT---TCCTAGCCACCACACAAACATGCATGTGTCCCCAATTCTTTTCAGTTTCACAcagagcaaaagttgtggacataagctgacacagaatcacaaactgtatttaatttatttgagatactgagtgaaatagctttgcccttattttatagaaagatggtgaacaatcataattactaaactaaagaggc--tt-tctggcaggggattgcaagtacactatg-ttttctcctGCTTTTAAGGTACATTTTCCTAAAGAGTTTTCTCTAGGAGTAAATGTCATCACT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     127801 378 -    863181 AACATGTGTTTTATTTAAGAATATGAATTACCTAGGACTCCAA---------AACATAGAGTGAGTCAATGGAAAATGGATGATACAGGGTCATTTCCAAGCCTTGGTGGGTT---TCCTGGCCACCACAAAAACAAggatgtgtccccatttcttttcagtttcacacagagcaaaagttgtggagataagctggcatagaatcacaaactatatttaatttatttgagatattgagtgaaatagttttgcccttagtttatagaaagatgatgaacaatcataatt-----actaaagaggt--tt-tttggcaggggatggcagatac--tatg-ttttctcctACTTTTAAGGTACATTTTCCTAAAGAGTCTTGTCTAGGAGTGAACGTCATCACT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29251116 385 -  71996105 AACACGAGATTTTTTTAGGAGTATGAATTACCTGGAATTCCAA---------AGGATAGAATAAGTCAAACGAAAATGGATGATATAGGGTCATTTCCAAGTCTCTGAGTGTC---CCCTGGCCACCATAGAAAAATgaagatgtttccatcacctttcagtttcacacaaagcaaaagttgtagacctaaactgacatagaatcac-aactgtatttaatttatttgagatattgaaggaggtagttttgcccaaattttatagaaagatgatgaacaatcacaattacta-aacaaagagac-ttt-tctggcaggggattgcaggtactatatgtttttctccTATTTTTAAGATACATTTTCCTAAAAAGTTTTGTCTAGGAGTAAATGTTTTCACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      61347 385 +    273075 AACATGAGATTTTTTTAGGAGTATGAATTACCTGGAATTCCAA---------AGGATAGAATAAGTCAAATGAAAATGGATGATATAGGGTCATTTCCAAGTCTCTGAATGTC---CCCTGGCCACCATAGAAAAATGAAGATGTGCCCATCGCCTTTCGGTTTCACAcaaagcaaaagttgtagacctaaactgacatagaatcac-aactgtatttaatttatttgagatattgaaggaggtagttttgcccaaattttatagaaagatgatgaacaatcacaattacta-aataaagaggc-ttt-tctggcaggggatcgtaggtactatatgtttttctccTATTTTTAAGATACGTTTTCCTAAAACGTTTTGTCTAGGAGTAAATGTTATCACT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      15675 385 -   1829203 AACATGTGATTTTTTTAAGAGTATGAATTGCCTGGGATTCCAA---------AACATAGAGTGAGTCAATGGAAAATGGATGACATAGGGTCATTTCCAAGCCTTTGTGGGTT---TCCCAGCCACCACACAAACATGGATGTCTCCCCAGTTCTTTTCAGTTTCACATACAgcaaaagttgtggacataagctgacacagaattacaaactgtatttaatttatttgagatattgagtgaaatagttttggctttattttatagaaagatgataaacaatcataattactaaactaaagaggc--tt-tctggcagtggattgcaagtatactatg-ttttctcctGCTTTTAAGGTACATCTTCCTAAAGAGTCTTGCCTAGGAGTAAATATCATCACT
i colAng1.NW_012115577v1   C 0 I 19
s cebCap1.NW_016107755v1     417474 386 -   1771730 AACATGAGATTTCTT-AAAAGTATAAATTACCTGGAATTCCAA---------AGCATAGAGTGAATAAAGTAAAAATGGAAAATATTGGGTCATGTCTAAGCATCTGAGGATCCCATCATGGTCACCACATGAAAATGGAGATGT-CCCATTACTTTTCAGTTTTACACAGAGCAAACCTTGTGGATCTAAACAGACATAGAATCACAAACTATATTTAACTGCATTGAAATATTGAGGGAGCTATCTTTGCTCTAATTGTATGGAAAGATGATGAACAGTCATAATTAGTAAACTAAAGAGGC--TT-TTTAGCTGGGGATTGCAGGTATAGGATT-TTTCCTCCTACTTTTAAGGTGCATTTTCCTAAAAAATCACGTCTAGGAGTAAACGTCATCACT
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      48835 5287 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I

a score=52613.000000
s hg38.chr6_GL000254v2_alt  1123117 23 +   4827813 TTGTTTTTTTTCCTCCCAATTGA-
s panPan2.chr6             30437618 21 + 173848474 TTG-CTTTtttcctccacattg--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6127290 23 +   6154872 TTGCTTTTTTTCCTCCCAATTGA-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74801465 21 + 122973662 TTG-CTTTtttcctctgcattg--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30468395 21 + 172585720 TTG-CTTTtttcctctgcattg--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29877495 21 - 170955103 TTG-CTGTTTTCCTCCTCATTG--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      69327 16 +   1495729 T------TTTTCCTCCGCATTG--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     128179 21 -    863181 TTG-CATTtttcctctgcattg--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29251501 21 -  71996105 TTG-CTTTTTTCCTACCCATTG--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      61732 21 +    273075 TTG-CTTTTTTCCTACCCATTG--
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     417860 22 -   1771730 TTG-CTTTTTTCCTCCCCATTG-A
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      48835 5287 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16060 19 -   1829203 I

a score=258150.000000
s hg38.chr6_GL000254v2_alt  1123140 49 +   4827813 Atcacttgttcctccctgcatttcagtaatgttgctagcatggaggtgt
s panPan2.chr6             30437639 49 + 173848474 atcacttggtcctccctgcatttcagtaaggttgctagaatggaggcat
i panPan2.chr6             C 0 N 0
s gorGor5.CYUI01015250v1    6127313 49 +   6154872 Atcacttgttcctccctgcatttcagtaatgttgctagaatggaggtgt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74801486 49 + 122973662 atcacttggtcctccctgcatttcagtaaggttgctagaatggaggcat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30468416 49 + 172585720 atcacttcgtcctccctgcatttctgtaaggttgctagaatggaggtgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29877516 49 - 170955103 Atcacttgttcctccctgcatttcagtaatgttgctagaatggaggatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      69343 49 +   1495729 Atcacttgttcctccctgcatttcagtaaggttgctagaacggaagtgg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     128200 49 -    863181 atcacttggtcctccctgcatttcagtaaggttgctagaatgggggtgt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29251522 49 -  71996105 Atcacttgttcctccctgcatttcagtaacgttgctagaatggaggtgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      61753 49 +    273075 ATCACTTGTTCCTCCCTGTATTTCAGTAACGTTGCTAGACTGGAGGTGT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      16079 49 -   1829203 atcacttgttcctccctgcatttcagtaaggttgctagaacggaggtgt
i colAng1.NW_012115577v1   I 19 C 0
s cebCap1.NW_016107755v1     417882 48 -   1771730 -tcacttgctcctccctgcatttcagtaaggttgctagaacagatgtgt
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      48835 5287 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I

a score=140618.000000
s hg38.chr6_GL000254v2_alt  1123189 27 +   4827813 ttgtccatgattcacagatgattcaaa
s panPan2.chr6             30306695 27 + 173848474 ttgtccatgattcacagatgagtcaaa
i panPan2.chr6             N 0 I 10
s gorGor5.CYUI01015250v1    6127362 27 +   6154872 ttgtccatgattcacagatgaatcaaa
i gorGor5.CYUI01015250v1   C 0 I 10
s nomLeu3.chr1a            74801535 27 + 122973662 ttgtccatgattcacagatgaatcaga
i nomLeu3.chr1a            C 0 I 8
s rheMac8.chr4             30468465 27 + 172585720 ttgtccatgattcacagatgaatcaaa
i rheMac8.chr4             C 0 I 10
s macFas5.chr4             29877565 27 - 170955103 ttgtccgtgattcacagatgtatcaaa
i macFas5.chr4             C 0 I 10
s macNem1.NW_012012100v1      69392 27 +   1495729 ttgtccatgattcccagaagaatcgaa
i macNem1.NW_012012100v1   C 0 I 10
s cerAty1.NW_012002535v1     128249 26 -    863181 ttgtccatgattc-cagatgaatcaaa
i cerAty1.NW_012002535v1   C 0 I 10
s chlSab2.chr17            29251571 27 -  71996105 ttgtccatgattcacagatgaatcaaa
i chlSab2.chr17            C 0 I 10
s manLeu1.NW_012101121v1      61802 27 +    273075 TTGTCCATGATTCACAGATGAATCAAA
i manLeu1.NW_012101121v1   C 0 I 10
s colAng1.NW_012115577v1      16128 27 -   1829203 ttgtccatgattcacagaagaatcgaa
i colAng1.NW_012115577v1   C 0 I 10
s cebCap1.NW_016107755v1     417930 27 -   1771730 ttatccatgattcactgatgaatcaaa
i cebCap1.NW_016107755v1   C 0 I 10
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      48835 5287 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I

a score=644529.000000
s hg38.chr6_GL000254v2_alt  1123216 109 +   4827813 gagcagagagcttctcctgaggtcacacagcacgtaagcggtggaacaatggcaggcacatgactctctaggcccctagtccagttttctGGGTTCTGTGAGAATTGTA
s panTro5.chr6             30076093 109 + 175400573 gagcagagagcttctcctgaggtcacacagcacgtaagcggtggaacaatggcaggcacatgattctctaggcccctagtccagttttctGGGTTCTATGAGAATTGTA
i panTro5.chr6             N 0 C 0
s panPan2.chr6             30306732 109 + 173848474 gagcagagagcttctcctgaggtcacacagcacgtaagcggtggaacaatggcaggcacatgactctctaggcccctagtccagttttctGGGTTCTATGAGAATTGTA
i panPan2.chr6             I 10 C 0
s gorGor5.CYUI01015250v1    6127399 109 +   6154872 gagcagagagcttctcctgaggtcacacagcatgtaagcggtggaacaatggcaggcacatgactctctaggcccctagtccagttttctGGGTTCTATGAGAATTGTA
i gorGor5.CYUI01015250v1   I 10 C 0
s nomLeu3.chr1a            74801570 109 + 122973662 gagtagagagtttctcctgaagtcacacagcacatgagtggtggagcaatgacaggcaaatgactctccaggtccctagtccagttttctGGGTGCCATGAAAATTACA
i nomLeu3.chr1a            I 8 C 0
s rheMac8.chr4             30468502 109 + 172585720 gagtagagagcttctcctgcggtcacacagcacgtgagcggtggaggaatgacaggcacacggctctccaggtccctagtccagttttctGGGTGCGATGAGAATTCCA
i rheMac8.chr4             I 10 C 0
s macFas5.chr4             29877602 109 - 170955103 gaatagagagcttctcctgaggtcacacagcacctgagtggaggagcaatgacaggcacacgactctccaggtccctagtccagttttctGGGTTCTATGAGAATTGTA
i macFas5.chr4             I 10 C 0
s macNem1.NW_012012100v1      69429 109 +   1495729 gagtagagagcttctcctgaggtcacacagcacgtgagcggtggaacaatgacaggcacacgactctccaggtccctagtccagttttctGGGTGCCATGAGAATTCCA
i macNem1.NW_012012100v1   I 10 C 0
s cerAty1.NW_012002535v1     128285 109 -    863181 gagtagagagcttctcctgcggtcacacagcacgtgactggtggagcaatgacaggcacatggctctccaggtccctagtccagctttctGGGTGCGATGAGAATTCCA
i cerAty1.NW_012002535v1   I 10 C 0
s chlSab2.chr17            29251608 108 -  71996105 gagcagagagcttctcccgaggtcacacagcacctgggtggtggagcaatgatgagcacatgacattccaggcctctagtccaa-tTTCTGGGTTCTATGAGAATTGTA
i chlSab2.chr17            I 10 C 0
s manLeu1.NW_012101121v1      61839 108 +    273075 GAGCAGAGAGCTTCTCCTGAGGTCACACAGCACCTGGGTGGTGGAGCAATGATGGGCACATGACATTCCAGGCCTCTAGTCCAA-TTTCTGGGTTCTATGAGAATTGTA
i manLeu1.NW_012101121v1   I 10 C 0
s colAng1.NW_012115577v1      16165 109 -   1829203 gagtagagagcttctcctgaggtcgcacagcacgtgagcggtggagcaatgacaggcacatgactctccaggtccctagtccagttttctGGGTGCCATGAGAATTCCA
i colAng1.NW_012115577v1   I 10 C 0
s cebCap1.NW_016107755v1     417967 109 -   1771730 gagtagagagtttcccctgaggtcacacagcacctgagaggtggagcaatgaggagtacttgacactccaggtccttagtccagtTTCCTGTGTGTTGTGAGAATTGCA
i cebCap1.NW_016107755v1   I 10 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      48835 5287 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I

a score=128284.000000
s hg38.chr6_GL000254v2_alt  1123325 20 +   4827813 GCCCTTGGTTTCTGTTAC-AT
s panTro5.chr6             30076202 20 + 175400573 GCCCTTGGTTTCTGTTAC-AT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30306841 20 + 173848474 GCCCTTGGTTTCTGTTAC-AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6127508 20 +   6154872 GCCCTTGGTTTCTGTTAC-AT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74801679 21 + 122973662 GCCTTTGGTTTCTCTTACAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30468611 20 + 172585720 GTCTTTGGTTTCTCTTAC-AT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29877711 20 - 170955103 GCCCTCGGTTTCTGTTAC-AT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      69538 20 +   1495729 GCCTTTGGTTTCTTTTAC-AT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     128394 20 -    863181 GTCTTTGGTTTCTCTTAC-AT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29251716 20 -  71996105 GCCCTTGTTTTCTGATAC-AT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      61947 20 +    273075 GCCCTTGTTTTCTGATAC-AT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      16274 20 -   1829203 GCCTTTGGTTTCTCTTAC-AT
i colAng1.NW_012115577v1   C 0 I 8101
s cebCap1.NW_016107755v1     418076 20 -   1771730 GCCCTAGGTTTTCCTTAC-AT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      54122 20 -    383796 GCCTTTGGTTTCTCTTAC-AT
i aotNan1.NW_018496904v1   I 5287 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I

a score=199474.000000
s hg38.chr6_GL000254v2_alt  1123345 35 +   4827813 GTGGTTCTCTTTTGAGCCAGAGAAGGAGGACGCAC
s panTro5.chr6             30076222 35 + 175400573 GTGGTTCTCTTTTGAGCCAGAGAAGGAGGACGCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30306861 35 + 173848474 GTGGTTCTCTTTTGAGCCAGAGAAGGAGGACGCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6127528 35 +   6154872 GTGGTTCTCTTTTGAGCCAGAGAAGGAGGACGCAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74801700 35 + 122973662 GTGGTTCATTTCTGAACCTGAGAAggagaatgcac
i nomLeu3.chr1a            C 0 I 21965
s rheMac8.chr4             30468631 35 + 172585720 GTGGTTCATTTCTGAACCTGAGAAGGAGAATGCAC
i rheMac8.chr4             C 0 N 0
s macFas5.chr4             29877731 35 - 170955103 GTGGTTCTCTTTTGAGCCAGAGAAAGAGAACGTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      69558 35 +   1495729 GTGGTTCATTTCTGAACCTGAGAAggagaatgcac
i macNem1.NW_012012100v1   C 0 I 2333
s cerAty1.NW_012002535v1     128414 35 -    863181 GTGGTTCATTTCTGAACCTGAGAAGGAGAATGCAC
i cerAty1.NW_012002535v1   C 0 T 62540
s chlSab2.chr17            29251736 35 -  71996105 GTGGTTCTCTTTTGAGCCAGAGAAGGAGAACACAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      61967 35 +    273075 GTGGTTCTCTTTTGAGCCAGAGAAGGAGAACGCAC
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     418096 35 -   1771730 GTGGTTGTCTTCTGAATCTGAGAAGGAGAATGCAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      54142 35 -    383796 ATGTTTCTTTTCTGAGCCAGAGAAGGAGAATTCAC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I

a score=71446.000000
s hg38.chr6_GL000254v2_alt  1123380 28 +   4827813 AGTGAGAAGAAAGTGCCAGAGCCCCAAG
s panTro5.chr6             30076257 28 + 175400573 AGTGAGAAGAAAGTGCCGGAGCCCCAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30306896 28 + 173848474 AGTGAGAAGAAAGTGCCGGAGCCCCAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6127563 28 +   6154872 AGTGAGAAGAAAGTGCCGGAGCCCCAAG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29877766 28 - 170955103 AGTGAGAAGAAAGTGCCAGAGCCCCAAG
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29251771 28 -  71996105 AATGAGAACAAATTGCCAGAGCCCCAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      62002 28 +    273075 AATGAAAATAAATTGCCAGAGCCCCAAG
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     418131 27 -   1771730 AGTGAGAATGAAGTGCC-GAGTCCTAAG
i cebCap1.NW_016107755v1   C 0 I 21794
s aotNan1.NW_018496904v1      54177 28 -    383796 AGTGAGAATAAAGTACCAGTGCTCCCAG
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e cerAty1.NW_012002535v1     128449 62540 -    863181 T
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=450548.000000
s hg38.chr6_GL000254v2_alt  1123408 165 +   4827813 TCCTG-G-CTTAGATTTACTGGGCTGGGGCATGGA--GAGAGAGGCTGCCACTGATTCTCTTAACTCCAGCTTCTATTACCAGTCACTAAGCTGAAAGCAGGAAAGTTTATCTTCTGCACTTGGTCCATCAGAACTAAGATGGCAGAAAGCCCCACTATCTACCACGGA
s panTro5.chr6             30076285 165 + 175400573 TCCTG-A-CTTAGATTTACTGGGCTGGGGCATGGA--GAGAGAGGCTGCCACTGATTCTCTTAACTCCAGCTTCTACTACCAGTCACTAAGCTGAAAGCAGGAAAGTTTATCTTCTGCACTTGGCCCATCAGAACCAAGATGGCAGAAAGCCCCACTATCTACCACGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30306924 165 + 173848474 TCCTG-G-CTTAGATTTACTGGGCTGGGGCATGGA--GAGAGAGGCTGCCACTGATTCTCTTAACTCCAGCTTCTATTACCAGTCACTAAGCTGAAAGCAGGAAAGTTTATCTTCTGCACTTGGCCCATCAGAACCAAGATGGCAGAAAGCCCCACTATCTACCACGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6127591 165 +   6154872 TCCTG-G-CTTAGATTTACTGGGCAGGGGTATGGA--GAGAGAGGCTGCCACTGATTCTCTTAACTCCAGCTTCTATTACCAGTCACTAAGCTGAAAGCAGGAAAGTTTATCTTCTGCACTTGGCCCATCAGAACCAAGATGGCAGAAAGCCCCACTATCTACCATGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29877794 167 - 170955103 TCCTG-G-CTTAGATTTACTGGGCTGGGGCATGGAGAGAGAGAGGCTGCCACTGATTCTCTTAACTCCAGCTTCTATTATCAGTCACTCAGCCGAAAGCAGGAAGGTTTATCTTCTGCACTTGGCCCATCAGAACCAAGATGACAGAAAGCCCCACTTTCTACCATGGA
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29251799 168 -  71996105 TCCTTCG-CTTATATTTACTGGGCTGGGGGATGGAGGGAGAGAGGCTTCCACTGATTCTCTTAATTCCAGCTTCTATTATCAGTCACTCAGCTGAAAGCAGGAAGGTTTATCTTCTGCACTTGGCCTATCAGAACCAAGATGACAGAAAGCCCCACTTTCTACCATGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      62030 168 +    273075 TCCTTCG-CTTATATTTACTGGGCTGGGGGATGGAGGGAGAGAGGCTCCCACTGATTCTCTTAATTCCAGCTTCTATTATCAGTCACTCAGCTGAAATCAGGAAGGTTAATCTTCTGCACTTGGCCTATCAGAACCAAGATGACAGAAAGCCCCACTTTCTACCATGGT
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     439952 165 -   1771730 TCCTG-G-CTTAGATTTACTGGGCT-GCGGATGGAGAGGGAAAGATTGTCACTGATTCTTTCAACTCCAGCTTCCATTATCTGCCACTCAGCTGAAAGCAGGAATGTTTATCTTCTGCACTTGACCCGTCAGAACCAAGATGAC-GAAAGCCCCACTATCTACCATGGC
i cebCap1.NW_016107755v1   I 21794 C 0
s aotNan1.NW_018496904v1      54205 168 -    383796 CCCTG-GTCCTAGATTTGCTGGGCTGGGGGATGGAGAGAGAGAGGCTGCCAGTCATTCTCTTAATTCTGACTTCTATTCTCAGTCACTCAACTGAAAGCATGATGGTTTATCTTCTGCACTTGGGGCATCAGAATCAACATGACAGAAATCCCCACTATCTACCATGGA
i aotNan1.NW_018496904v1   C 0 I 52
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e cerAty1.NW_012002535v1     128449 62540 -    863181 T
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=89983.000000
s hg38.chr6_GL000254v2_alt  1123573 47 +   4827813 AAAGACAAGGGTCC--CTCTTACCTTGAACCATGACCCAGCTTTCTAAC
s panTro5.chr6             30076450 47 + 175400573 AAAGACAAGGGTCC--CTCTTACCTTGAACCATGACCCAGCTTTCTAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30307089 47 + 173848474 AAAGACAAGGGTCC--CTCTTACCTTGAACCATGACCCAGCTTTCTAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6127756 47 +   6154872 AAAGACAAGGATTC--CTCTTATCTTGAACCACGACCCAGCTTTCTAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29877961 48 - 170955103 AAAGACAAGGGCCC-TCCCACACCTTGAATCATGACCCAGGTTTCTAAC
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29251967 48 -  71996105 AAAGACAATGGCCC-TCCCATGCCTTGAATCATGACCCAGTTTTCTAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      62198 48 +    273075 AAAGACAATGGCCC-TCCCACGCCTTGAATCATGACCCAGTTTTCTAAC
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     440117 49 -   1771730 AAATACAAGGGTTCCTCCCACAGCTTGAACCATGGCCCAGGTTTCTAGC
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      54373 52 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e cerAty1.NW_012002535v1     128449 62540 -    863181 T
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=206491.000000
s hg38.chr6_GL000254v2_alt  1123620 73 +   4827813 TACATATGTTTTTCTGCACATGTAGCTATTTTTCTTCTCATCAAGCTCCAGTACTCACAGTGCAAACACAGGA
s panTro5.chr6             30076497 73 + 175400573 TACATATGTTTTTCTGCACATGTAGCTATTTTTCTTCTCATCAAGCTCCAGTACTCACAGTGCAAACACAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30307136 73 + 173848474 TACATATGTTTTTCTGCACATGTAGCTATTTTTCTTCTCATCAAGCTCCAGTACTCACAGTGCAAACACAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6127803 72 +   6154872 TACATATGTTTTTCTGCACATGTAGCTATTTTTCTTCTCATCAAGCTCCAGTACTCAC-GTGCAAACACAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29878009 73 - 170955103 TACATATGCTTTTCTGCACATGTAACTATTTCTGTTCTCATCAAGCCCCAGTTCTCACAGTGCAAATACAGGA
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29252015 73 -  71996105 TACGTATACTTTTCTGCACATGTAACTATTTCTGTTCTCATCAAGCCCCAGTTCTCACAGTGCAAACACAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      62246 73 +    273075 TACATATGCTTTTCTGCACATGTAACTATTTCTGTTCTCATCAAGCCCCAGTTCTCACAGTGCAAACACAGGA
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     440166 73 -   1771730 TACATATGCTTTTCTGTACGTGTAACTATTTCTCTTCTCATCAAGCTCCGGTTCTCATAGTacaaatacagga
i cebCap1.NW_016107755v1   C 0 I 209
s aotNan1.NW_018496904v1      54425 72 -    383796 TACATATGTTTTTCTGCACATGTAACTACTTCTCTTTCCATCAAGCCCC-ATTGTCACAGTGCAAATACAGGA
i aotNan1.NW_018496904v1   I 52 I 60494
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e cerAty1.NW_012002535v1     128449 62540 -    863181 T
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=5952.000000
s hg38.chr6_GL000254v2_alt  1123693 4 +   4827813 GATA
s panTro5.chr6             30076570 4 + 175400573 GCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30307209 4 + 173848474 GCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6127875 4 +   6154872 GCTA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29878082 4 - 170955103 ACTA
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29252088 4 -  71996105 GCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      62319 4 +    273075 GCTA
i manLeu1.NW_012101121v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      54497 60494 -    383796 I
e cebCap1.NW_016107755v1     440239 209 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e cerAty1.NW_012002535v1     128449 62540 -    863181 T
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=16744.000000
s hg38.chr6_GL000254v2_alt  1123697 7 +   4827813 CTGAGCC
s panTro5.chr6             30076574 7 + 175400573 CTGAGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30307213 7 + 173848474 CTGAGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6127879 7 +   6154872 CTGAGCC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29878086 7 - 170955103 CGGAGCC
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29252092 7 -  71996105 CTGAGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      62323 7 +    273075 CTGAGCC
i manLeu1.NW_012101121v1   C 0 C 0
s aotNan1.NW_018496904v1     114991 7 -    383796 CTGAACC
i aotNan1.NW_018496904v1   I 60494 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e cebCap1.NW_016107755v1     440239 209 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e cerAty1.NW_012002535v1     128449 62540 -    863181 T
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=3276.000000
s hg38.chr6_GL000254v2_alt  1123704 1 +   4827813 T
s panTro5.chr6             30076581 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30307220 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6127886 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29878093 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29252099 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      62330 1 +    273075 T
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     440448 1 -   1771730 T
i cebCap1.NW_016107755v1   I 209 C 0
s aotNan1.NW_018496904v1     114998 1 -    383796 T
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e cerAty1.NW_012002535v1     128449 62540 -    863181 T
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=875251.000000
s hg38.chr6_GL000254v2_alt  1123705 281 +   4827813 GATGCTCTGATGGAAGCTCTGAGTTGAGATTTTATTTTAT--------------------------------------------------------ACTTAGGTGCCTCTGAGTCATTAGAGTTTTTTGCCTGACTCCACTCTGGCCCCATTTCAATCAAGGTCTATATGCTCTGGGACCTCTCCAGGTTCTCATCAGAAATGaa--aaaaaa-------------aaaaa----aaaaaaGCCATGTCCAGCTCCTGGGTCCTCCCTGATAGCAGTGAGAGGCAGCTCCTAATGGGAGAGAGCCTTGGGGTGACCAAGGCCTCACAGACTTCATTATTCCTGGACCACATGGCTC
s panTro5.chr6             30076582 275 + 175400573 GATGCTCTGATGGAAGCTCTGAGTTGAGATTTTATTTTAT--------------------------------------------------------ACTTAGGTGCCTCTGAATCATTAGAGTTTTTTGCGTGACTCCACTCTGGCCCCATTTCAATCAAGGTCTATATGCTCTGGGACCTCTCCAGGTTCTCATCAGAAATGAA--AAAAAA-------------AAAAA----------GCCATGTCCAGCTCCTGGGTCCTCCCTGATAGCAGTGAGAGGCAGCTCCTAATGGGAGAGAGCCTTGGGGTGACCAAGGCCTCACAGACTTCATTATTCCTGGACTACATGGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30307221 273 + 173848474 GATGCTCTGATGGAAGCTCTGAGTTGAGATTTTATTTTAT--------------------------------------------------------ACTTAGGTGCCTCTGAATTATTAGAGTTTTTTGCGTGACTCCACTCTGGCCCCATTTCAATCAAGGTCTATATGCTCTGGGACCTCTCCAGGTTCTCATCAGAAATGAA--AAAAAA-------------AAA------------GCCATGTCCAGCTCCTGGGTCCTCCCTGATAGCAGTGAGAGGCAGCTCCTAATGGGAGAGAGCCTTGAGGTGACCAAGGCCTCACAGACTTCATTATTCCTGGACTACATGGCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6127887 284 +   6154872 GATGCTCTGATGGAAGCTCTGAGTTGAGATTTTATTTTAT--------------------------------------------------------ACTTAGGTGCCTCTGAATCATTAGAGTTTTTTGCCTGACTCCACTCTGGCCCCATTTCAATCAAGGTCTATATGCTCTGGGACCTCTCCAGGTTCTCATCAGAAATGaa--aaaaaa-------------aaaaaaaaaaaaaaaGCCATGTCCATCTCCTGGGTCCT-CCTGATAGCAGTGAGAGGCAGCTCCTAATGGGAGAGAGCCTTGGGGTGACCAAGGCCTCACAGACTTCATTATTCCTGGACCACATGGCTC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29878094 284 - 170955103 GATGCTCTAATGGAAGCTCTGAGTTGAGATATTATTTTAC--------------------------------------------------------ACTTAGGTGCCTCTGAATCATTGCAGAGTTTTGCCTGACTCCACTCTGGCCCCATTTTGATCAAGGTCTATATGCTCTGGGACCTCTCCAGGTTCTTATCAGAAATGAT--aaaaaaaaaaaaaaaaaagaaG------------GTCATATCCAGCTCCTGGGGTC--CCTGACAGCAGTGAGAGGTAGCTCCTAATTGGGGAGAGCCTTGGGGTGACCAAGGACTCATAGACTTCATTACTGCTGGACCACATGGCTC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1      65909 271 -    863181 GATGCTCTAATGGAAGCTCTGAGTTGAAATTTTATTTTAT--------------------------------------------------------ACTTAGGTACCTCTGAATCATTGCAGAGTTTTACCTGACTCTACTCTGACCCTATTTTAATCAAGGTCTATATGCTCTGGGACCTCTCCAAGTTCTCATCAGAAATGAC--CAAAAA-------------AAT------------GCCTTGTGCAGCTACCGGGGTC--CCTGATAGCAGTGATAAGCAACTCCTAATGGGAGAGAGCCTTGGGGTGACCAAAGACTCATAGACTTCATTACTGCTGGGCCACATGGCTC
i cerAty1.NW_012002535v1   T 62540 C 0
s chlSab2.chr17            29252100 273 -  71996105 GATGCTCTAATGGATGCTCTGAGTTGAAATTTTATTTTAT--------------------------------------------------------ACTTAGGTGCCTCTGAATCATTGCAGAGTTTTGCCTGACTCTACTCTGACCCCATTTCAATCAAGGTCTATATGCTCTGGGACCTCTCCAAGTTCTCATCAGAAATGACAAAAAAAA-------------AAT------------GCCTTGTCCAGCTACCGGGGTC--CCTGATAGCAGTGATAAGCAGCTCCTAATGGGAGAGAGCCTTGGGGTGACCAAAGACTCATAGACTTCATTACTGCTGGGCCACATGGCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      62331 271 +    273075 GATGCTCTAATGGAAGCTCTGAGTTGAAATTTTATTTTAT--------------------------------------------------------ACTTAGGTACCTCTGAATCATTGCAGAGTTTTACCTGACTCTACTCTGACCCTATTTTAATCAAGGTCTATATGCTCTGGGACCTCTCCAAGTTCTCATCAGAAATGAC--AAAAAA-------------AAT------------GCCTTGTGCAGCTACCGGGGTC--CCTGATAGCAGTGATAAGCAACTCCTAATGGGAGAGAGCCTTGGGGTGACCAAAGACTCATAGACTTCATTACTGCTGGGCCACATGGCTC
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     440449 329 -   1771730 GATGCTATGATGGAAGCTCTGAGTTGAGATTTTATTTTATTTTTTAATTGCACTTTGGGCTTTGGGGTACATGTGCACATCCTGCATCCATTTTA-ACTTAGGTGCCTCTGAGTTGTTGCAGAGTTTTGCCTGACTCCACCCTGACCTCATTTTGATCAAGGTCTATATGATCTTGGACCTCTCCAGCTTCTTATTAGAAATGAC--CAGAAA-------------AAAAAA----T----GCCATGTCCAGTTCCTGGGGTT--CCTGATATCAGTGAGAGCCAGCTCCTAATGGGGGA-AGCCTTGTGGTGATCAAGGCTTCAGAGACCTCATTACTGCTGGAACACATGGCTC
i cebCap1.NW_016107755v1   C 0 I 60
s aotNan1.NW_018496904v1     114999 332 -    383796 GATGCTCTGATGGAAGCTCTGAGTTGAGATTTTATTTTATTTTTTAATTGCGCTTTGGGCTCTGGGCTACACGTGCACATCCTGCATCCATTTTACACTTAGGTGCCACTGAGTTGTTGCAGAGTTTTGCCTGACTCCAGCCCGACTCCATTTTGATCAAGGTCTATATGATCTTGGACCTCTCCAGGTTCTCGTTAGAAATGAC--TAAAAA-------------AGAAAAACAGT----GCCATGTCCAGCTCCTGGGGTT--CCTGGTATCAGTGAGAAGCAGCTCCTAATGGGGGA-AGCCTTGCAGTGACCAAGGCCTC--AGACTTCATTACTGCTGGAATACATGGCTC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=155912.000000
s hg38.chr6_GL000254v2_alt  1123986 62 +   4827813 CAGCCTCCTGATCACAATGGATCAGTGGTCTTAGATTCCGCTCCAATATTTGAAGTTTTTTG
s panTro5.chr6             30076857 62 + 175400573 CAGCCTCCTGATCACAATGGATCAGTGGTCTTAGATTCCGCTCCAATATTTGAAGTCTTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30307494 62 + 173848474 CAGCCTCCTGATCACAATGGATCAGTGGTCTTAGATTCCGCTCCAATATTTGAAGTCTTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6128171 62 +   6154872 CAGCCTCCTGATCACAATGGATCAGTGGTCTTAGATTCTGCTCCAATATTTGAAGTCTTTTG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29878378 62 - 170955103 CAGCCTCCTGACCACAATGGATCAGTGGTCCTAGATTCACTTCTGATATTTAAAGTCTGTTG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1      66180 62 -    863181 CAGCCTCTTGACCACAATGGATCAATGGTCCTAGAGTCACCTCTGATATTTAAAGTCTTTCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29252373 62 -  71996105 CAACCTCTTGACCACAATGGATCGATGGTCCTAGATTCACCTCTGATATTTAAAGTCTTTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      62602 62 +    273075 CAGCCTCTTGACCACAATGGATCAATGGTCCTAGAGTCACCTCTGATATTTAAAGTCTTTCA
i manLeu1.NW_012101121v1   C 0 C 0
s aotNan1.NW_018496904v1     115331 60 -    383796 -AGTTTCCTGATCAAAATGAAGCTGTGGTCCTAGATTCACCTCTGATTTTTAGAGTCTTTG-
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e cebCap1.NW_016107755v1     440778 60 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=578006.000000
s hg38.chr6_GL000254v2_alt  1124048 174 +   4827813 TTCTTCGGCCTCGGCAAATGCTCTCTGGTTGAGATGAAGGGAAAAGACACAGAGACGCAAAAGCTGTGACTGCATGGAACTCTGTCCCAGGTACCTCCCGGTGTTCTCTTACTTATGTTGGCCATGTCCTCATGAATTTAGTG----------------AAATGGGCATGTTGTCTCTGAGTGGAAGTGA
s panTro5.chr6             30076919 174 + 175400573 TTCTTCGGCCTCGGCAAATGCTCTCTGGTTGAGATGAAGGGAAAAGACACAGAGACGCAAAAGCTGTGACTGCATGGAACTCTGTCCAAGGTACCTCCCGGCGTTCTCTTACTTATGTTGGCCATGTCCTCATGAATTTAGTG----------------AAATAGGCATGTTGTCTCTGAGTGGAAGTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30307556 174 + 173848474 TTCTTCGGCCTCGGCAAATGCTCTCTGGTTGAGATGAAGGGAAAAGACACAGAGACGCAAAAGCTGTGACTGCATGGAACTCTGTCCAAGGTACCTCCCGGTGTTCTCTTACTTATGTTGGCCATGTCCTCATGAATTTAGTG----------------AAATAGGCATGTTGTCTCTGAGTGGAAGTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6128233 173 +   6154872 TTCTTCGGCCTCGGCAAATGCTCTCTGCTTGAGATGAAGGGAAAAGACACAGAGACGCAAAAGCTGTGACTGCATGGAACTCTGT-CAAGGTACCTCCCGGTGTTCTCTTACTTATGTTAGCCATGTCCTCATGAATTTAGTG----------------AAATGGGCATGTTGTCTCTGAGTGGAAGTGA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29878440 190 - 170955103 TTCTTCAGCCTCCACAAATGCTCTTTGGTTGAGATGAAGGGAAAGGACACAGAGACCCAAACGCTGTGACTGCCTGGAACTCTGTCCAAGGTACCTCCCAGTGTTCTCTTACTTACGTTGGCCATGTCCCCATGAATTTAGTAAAATAGCAAAATGGCCAAATGGCCATGTTGTCCCTCAGTGGAAGTGA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1      66242 173 -    863181 TTCTTCAGCCTCCAGAAATGCTCTCTGGTTGAGATGAAGGTAAAGGACACAGAAACCCAAAAACTGTAACTGCCTGGAACTCTGTCCAAGGTACCTCCCAGTGTTCTCATA-GTATGTTGGCCATGTCCTCAGGAATTTAGTG----------------AAATGGCCATGTTGTCTCCCAGTGGAAGTCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29252435 173 -  71996105 TTCTTCAGCCTCCACAAATGCTGTCTGGTTGAGATGAAGGTAAAGGACACAGAGACCCAAAAACTCTAACTGCCTGGAACTCTGTCCAAGGTACCTCCCAGTGTTCTCTTA-TTATGTTGGCCATGTCCTCAGGAATTTAGTG----------------AAATGGCCATGTTGTCTCCCAGTGGAAGTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      62664 173 +    273075 TTCTTCAGCCTCCAGAAATGCTCTCTGGTTGAGATGAAGGTAAAGGACACAGAAACCCAAAAACTGTAACTGCCTGGAACTCTGTCCAAGGTACCTCCCAGTGTTCTCATA-GTATGTTGGCCATGTCCTCAGGAATTTAGTG----------------AAATGGCCATGTTGTCTCCCAGTGGAAGTCA
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     440838 174 -   1771730 TTCTTTGGCCTCCACAAATGCTCTCTGGTTGAGATGAAGGGTAAGGACACAGAGACCCACAAGCTGTGACTGGCCCGAGCTCTGTCCAAGGTACCTCCCAGTGTTCTGTTACTTAAGTTTGCCACTTCCTCAGGAATTTAGTG----------------AAATGGCCACGTTGTCTCTGAGTGGAAGTGA
i cebCap1.NW_016107755v1   I 60 T 21950
s aotNan1.NW_018496904v1     115391 173 -    383796 TTCTTCGTTCTCCACAAATGCTTTCTGGTTGAGATGAAGGGTAAGGACACGGAGACCCATAAGCTGTGCCTGCCCCGAACTCTGTCCAAGGTACCTCCCAGTATTATGTTACTTATGTTTGCCATATCCTCTGGAA-TTAATG----------------AAATGGCCACATTGTCTCTGAGTGGAAGTGA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=12330.000000
s hg38.chr6_GL000254v2_alt  1124222 3 +   4827813 GGG
s panTro5.chr6             30077093 3 + 175400573 GGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30307730 3 + 173848474 GGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6128406 3 +   6154872 GGG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29878630 3 - 170955103 GGG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1      66415 3 -    863181 GGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29252608 3 -  71996105 GGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      62837 3 +    273075 GGG
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     419062 2 -   1771730 -GG
i cebCap1.NW_016107755v1   T 21950 I 1
s aotNan1.NW_018496904v1     115564 3 -    383796 GGG
i aotNan1.NW_018496904v1   C 0 T 60541
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=1538189.000000
s hg38.chr6_GL000254v2_alt  1124225 446 +   4827813 GACACTACTGGGCAGAGCTCCATCGAAGGGTGGCTGGTGTCCTCTATACCATTTATCTACACATGTTGGGGTTT-TTCTAGCATGAAATGTCCCAGAGGCAGCCAAACCCGAAGCTTGGCTCCTCCAAGGAATGAGTGTGAGTATCATAGCCCT-GGCCAATGAGCACTGAACTCTAGAGAGACCAAGAGACCTTCTAAATATTGGGACACTTTAGTT--------------CTGAATCCCAGAAGTTGGCTTCTTGCCTGGGAGGCAGGTGTCACTGCATCTGATCCAAaaaagcagccccatagctcaagatgctcttctggatttctgcctcttcctggttcctggccaagcaaatcttcactgctttgctagcccatctataaattcaaccagacttttcaaatatgtattttcct-cccatttttccagttgtactcaatgggagaagtggtccaaat
s panTro5.chr6             30077096 446 + 175400573 GACGCCACTGGGCAGAGCTCCATCGAAGGGTGGCTGGTGTCCTCTATACCATTTATCTACACATGTTGGGGTTT-TTCTAGCATGAAATGTCCCAGAGGCAGCCAAACCCGAAGCTTGGTTCCTCTAAGGAATGAGTGTGAGTATCGTAGCCCT-GGCCAATGAGCACTGAACTCTAGAGAGACCAAGAGACCTTCTAAATATTGGGACACTTTAGTT--------------CTGAATCCCAGAAGTTGGCTTCTTGCCTGGGAGGCAGGTGTCACTGCATCTGATCCAAaaaagcagccccatagctcaaggtgctcttctggatttctgcctcttcctggttcctggccaggcaaatcttgactgctttgctagcccatctataaattctaccagacttttcaaatacgtattttcct-cccatttttccagttgtagtcaatgggagaagtggtccaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30307733 446 + 173848474 GACACCACTGGGCAGAGCTCCATCGAAGAGTGGCTGGTGTCCTCTATACCATTTATCTACACATGTTGGGGTTT-TTCTAGCATGAAATGTCCCAGAGGCAGCCAAACCCGAAGCTTGGTTCCTCTAAGGAATGAGTGTGAGTATCGTAGCCCT-GGCCAATGAGCACTGAACTCTAGAGAGACCAAGAGACCTTCTAAATATTGGGACACTTTAGTT--------------CTGAATCCCAGAAGTTGGCTTCTTGCCTGGGAGGCAGGTGTCACTGCATCTGATCCAAaaaagcagccccatagctcaaggtgctcttctggatttctgcctcttcctggttcctggctaggcaaatcttcactgctttgctagcccatctataaattctaccagacttttcaaatacgtattttcct-cccatttttccagttgtagtcaatgggagaagtggtccaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6128409 446 +   6154872 GACACCACTGGGCAGAGCTCCATCGAAGGGTGGCTGGTGTCCTCTATACCATTTATCTACACATGTTGGGGTTT-TTCTAGCATGAAATGTCCCAGAGGCAGCCAAACCCAAAGCTTGGCTCCTCCAAGGAATGAGTGTGAGTATCGTAGCCCT-GGCCAATGAGCACTGAACTCTAGAGAGACCAAGAGACCTTCTAAATATTGGGACACTTTAGTT--------------CTGAATCCCAGAAGTTGGCTTCTTGCCTGGGAGGCAGGTGTCACTGCATCTGATCCAAaaaagcagccccatagctcaaggtgctcttctggatttctgcctcttcctggttcctggccaggcaaatcttcactgctttgctagcccatctataaattcaaccagacttttcaaatatgtattttcct-cccatttttccagttgtagtcaatgggagaagtggtccaaat
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29878633 446 - 170955103 GAGACCACTGGGCAGAGCTCCATGGAAGGGTGGCTGGTGTCCTCTACACCCTTTACCTACACCTGTTGGGGTTT-TTCTAGCATGAAATGTCCCAGAGGCAGCCAAACCTGAAGCTTGGCTCCTCCAAGGAATGAGTGTGAGTATCATAGCCCT-GGCCAATGAGCACTGAATTCTAGAGAGACCAAGAGACCTTCTAAGTATTGGGACACTTTAGTT--------------CTGAATCCCAGAAGCTGCCTTCTTGCCCGGGAGGCAGGTGTCACTGCATCTGGTCCACAGAAGCAGCCCCACAGCTCAAGGTGCTCTTCTGGATTTCTGCCTCTTCCTGGTTCCTGAACTGGCAAATCTTCACTGCTTTGCTGGCCCATCTATAAATTCAAGCAGACTTTTCAAATATGTATTTTCCT-CCCACTTTTCCAGTGGTACTCAATGGGAGAGCTGGTCCAAAT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1      66418 439 -    863181 GAGACCACTAGGCAGAGCTCTA-------GTGGCTGGTGTCCTCTACACCATTTATCTATACATGTTGGGGTTT-TTCTAGCATGAAATGCCCCAAAGGCAGTCAAACCCGAAGCTTGGCTCCTCCAACAAATGAGTGTGAACATCTTAGCCTT-GGCCAATGAGCACTGAATTCTAGAGAGACCACGAGACCTTCTAAATAGTGGGACACTTTAGTT--------------CTGAATGCCAGAAGCTGCCTTCTTGCCTGGGAGGCAGGTGTCACTGCATCTGGTCCACAGAAGCAGCCCCACAGCTCAAGGTGCTCTTCTGGATTTCTGCCTCTTCCTGGTTCCTGAACTGGCAAATCTTCACTGCTTTGCTAGCCCATCTGTAAATTCAAGCAGACTTTTCAAATATGTATTTTCCT-CCCACTTTTCCAGTGGTACTCAATGGGAGAGCTGGTCCAAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29252611 439 -  71996105 GAGATCACTAGGGAGAGCTCCA-------GTGGCTGGTGTCCTCTACACCATTTATCTATACATGTTGGGGTTT-TTCTAGCATGAAATGCCCCAAAGGCAGTCAAACCCGAAGCTTGGCTCCTCCAACAAATGAGTGTGAACATCTTAGCCCT-GGCCAATGAGCACTGAATTCCAGAGAGACCAAGAGACCTTCTAAATATTGGGACACTTTAGCT--------------CTGAATCCCGGAAGCTGCCTTCTTGCCAGGGAGGCAGGTGTCACTGCATCTGGTCCACAGAAGCAGCCCCACAGCTCAAGGTGCTCTTCTGGATTTCTGCCTCTTCCTGGTTCCTGGCCTCACAAATCTCCATTGCTTTGCTAGCCCATCTATAAATTCATGCAGACTTTTCAAATATGTATTTTCCT-CCCCCTTTTCCAGTGGTACTCAATGGGGGAGGTGGTCCAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      62840 439 +    273075 GAGACCACTAGGCAGAGCTCTA-------GTGGCTGGTGTCCTCTACACCATTTATCTATACATGTTGGGGTTT-TTCTAGCATGAAATGCCCCAAAGGCAGTCAAACCCGAAGCTTGGCTCCTCCAACAAATGAGCGTGAACATCTTAGCCTT-GGCCAATGAGCACTGAATTCTAGAGAGACCACGAGACCTTCTAAATAGTGGGACACTTTAGTT--------------CTGAATGCCAAAAGCTGCCTTCTTGCCTGGGAGGCAGGTGTCACTGCATCTGGTCCACAGAAGCAGCCCCACAGCTCAAGGTGCTCTTCTGGATTTCTGCCTCTTCCTGGTTCCTGAACTGGCAAATCTTCACTGCTTTGCTAGCCCATCTGTAAATTCAAGCAGACTTTTCAAATATGTATTTTCCT-CCCACTTTTCCAGTGGTACTCAATGGGAGAGCTGGTCCAAAT
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     419065 458 -   1771730 GAGCTCACTGGGCAGAGCTCTATGAAAGGGTGGCTGGTGTCCTCCAGGCCCTTTACCTAGGCTTGTTGGGCTTT-CTCTAGCATGAAGTGTCCTAGAGGCAGCCAAACCCAAAACTTGAATTCTTCAATAAATGAGTGTGAGGGTCTCAGTCAT-TTTGAATGAGCACTGAATTATAGAGAGATCAAAAGA---TCTAAATATTGGGCCAATTCAGTTCTGAATTCTGAGTCCTGAATCCTGTAAGCCAGCTTCTGGCCAAGGGAGCAGGTGTCACTGCATGTGGTCCACaaaagcagccccacaggttaatttgctctttgggatttctgattcctcctggttcccggcctggaagatcttcactgctttgttagttcatctacaagtttaaccagatttttcaaatacttatttttctgctcactttttcacttgtgttcaatgggaggggtggcccaaat
i cebCap1.NW_016107755v1   I 1 N 0
s aotNan1.NW_018496904v1      55026 448 -    383796 GAGACCACTGGACAGAGCTCCATGGAAGGGTGGCTGGTGTCCTCTACACCATTAATCTACACATGTTGGGCTTTACTCTAGCATCAGATTTCACAGAGACAGCCAAATCCTAAACTTGAATCCTCCAATGAATGAGTGTGAGCATCTTAGCCCTGGTCAAATGGGTACTGCATTCTAGAGAGACCAAGAGACCTTCTAAATATTGGGACACTTTAGTT--------------CTGAATCCCAGAAATTGGCTTCTGGCCTGGGAGGCAGGTGTCACTGCATCTGCTCCACAAAAGCAGCCCCACAGCTCAAGGTGCTCTTCTGGATTTCTGCCTCTTTCTGGTTCCTGGCCTGGCAGATCTGCACTGCTTTGTTAGCTCATCTATAAATTCAACCAGACTTTCCAAGTATGTATTTTCCT-CCCACTTTTCCAGTTGTACTCAATGGGAGGGGTCGTCCAAAT
i aotNan1.NW_018496904v1   T 60541 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=487277.000000
s hg38.chr6_GL000254v2_alt  1124671 165 +   4827813 gacctaatcagcaattgctggaaacCAAAGTAACAGTATACAATTCTATGTGTTAATATCATATACCAAGAGAGAAAATGTATAGATATCAGTAGTAGCCATTTAAGCACTGTAATAATATCTATCTATATCCCATGAGTATA--ATATATATAAATAAATGA--TA----AC
s panTro5.chr6             30077542 165 + 175400573 gacctaatcagcaattgctggaaacCAAAGTAACAGTATACAATTCTATGTGTTAATATCATATACCAAGAGAGAAAATGTATAGATATCAGTAGTAGCCATTTAAGCACTGTAATAATATCTATCTGTATCCCATGAGTATA--ATATATATAAATAAATGA--TA----AC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30308179 165 + 173848474 gacctaatcagcaattgctggaaacCAAAGTAACAGTATACAATTCTATGTGTTAATATCATATACCAAGAGAGAAAATGTATAGATATCAGTAGTAGCCATTTAAGCACTGTAATAATATCTATCTGTATCCCATGAGTATA--ATATATATAAATAAATGA--TA----AC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6128855 163 +   6154872 gacctaatcagcaattgctggaaacCAAAGT-ACAGTATACAATTCTATGTGTTAATATCATATACCAAGAGAG-AAATGTATAGATATCAGTAGTAGCCATTTAAGCACTGTAATAATATCTATCTATATCCCATGAGTATA--ATATATATAAACAAACGA--TA----AC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29879079 172 - 170955103 GACCTAATCAGCTATTGCTGAAAGCCAAAGT-TCACTGTACAATTCTATATGTTAATGTCATATGCCAAGAGAGAAAATGCATAGATACCAGTAGTAGCCATTTAAGCACTGTAataatatctatctttattccatgagtattatatatatatatatatataaatcataacat
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1      66857 167 -    863181 GACCTAATCAGCAATTGCTGGAAACCAAAGT-ACAGTGTACAATTCTATATGTTAATGTCATGTACCAAGAGAGAAAATGCGTAGATACA---AGTAGCCACTTAAGCACTGTAATAATATCTCTCTATATACCCTTAGTATAATATATATATAAATAAATTA--CATATTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29253050 162 -  71996105 GACCTAATCAGCAATTGCTGGAAACCAAAGT-ACAGTGTACAATTCTATATGTTAATGTCATGTACCAAGAGAGAAAATGCATAGATCCA---AGTAGCCACTTAAGCACTG---TAATATCTCTCTATAGACCCTGAGtata--atatatataaataaatta--tatatTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      63279 167 +    273075 GACCTAATCAGCAATTGCTGGAAACCAAAGT-ACAGTGTACAATTCTATATGTTAATGTCATGTACCAAGAGAGAAAATGCGTAGATACA---AGTAGCCACTTAAGCACTGTAataatatctctatatatacccttagtataatatatatataaataaatta--tatattct
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     564878 163 -   1771730 GACCTAATCAGCAATTGCTGGAAACTAAAGA-ACAGTGTACAATTCTATATGTTAATGTCATATGCCAAGAGAGAAAATGCATAGACACCAGCAGTGGCCACTTA---CCAGTAataatatctatctatattctataattataatgcgtataacaataaATGG--TA----AC
i cebCap1.NW_016107755v1   N 0 N 0
s aotNan1.NW_018496904v1      55474 163 -    383796 GACCTAATCAGCAATTGCTGGAAACTAAAGA-ACAGCGTACAATTCTATATGTTAATGTCATATGCCAAGAGAGAAAACGCATAGACACCAGTAGTGGCCACTTA---CCAGTAATAATATCTCTATATATTCTATAATTATAATGCATATATCAATAAATGG--TA----AC
i aotNan1.NW_018496904v1   C 0 I 4
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=177740.000000
s hg38.chr6_GL000254v2_alt  1124836 50 +   4827813 AAGAAAATAATCTTTATGTGTAATACATGACTATGACTCTGACAGACAAA
s panTro5.chr6             30077707 50 + 175400573 AAGAAAATAATCTTTATGTGTAATACATGACTATGACTCTGACAAACAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30308344 50 + 173848474 AAGAAAATAATCTTTATGTGTAATACATGACTATGACTCTGACAAACAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6129018 50 +   6154872 AAGAAAATAATCTTTATGTGTAATACATGACTATGACTCTGATAGACAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29879251 50 - 170955103 aagaaaataatctctatgtgtaatatgtaACTATGGCTCTGATAGACAAA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1      67024 50 -    863181 AAGAAAATAATCTCTATGTGTAATATATGACTATGATTCTGATAGTCAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29253212 50 -  71996105 AAGAAAATAATCTCTATGTGTAATATACGACTATGATTCTGATAGACAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      63446 50 +    273075 aagaaaataatctctatgtgtaatatatGACTATGATTCTGATAGTCAAA
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     419694 50 -   1771730 AAGAAAATAAACTCTATGTGTAATACACTACTGTGACTCTAATAGACAAA
i cebCap1.NW_016107755v1   N 0 N 0
s aotNan1.NW_018496904v1      55641 50 -    383796 AAGAAAATAATCTCTATGTGTAATATATGACTATGGCTTTGATAGAAAAA
i aotNan1.NW_018496904v1   I 4 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=316325.000000
s hg38.chr6_GL000254v2_alt  1124886  88 +   4827813 CCTGAGAGCATAGTACGA---CACTT---ATCACCTTCACTCATG-----AGC--CAGATAGTGTGAAATGAGAAGCAGAGATTTGAAATGTGTTGCAAAA
s panTro5.chr6             30077757  91 + 175400573 CCTGAGAGCATAGTACGATGACACTT---ATCACCTTCACTCATG-----AGC--CAGATAGTGTAAAATGAGAAGCAGAGATTTGAAATGTGTTGCAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30308394  91 + 173848474 CCTGAGAGCATAGTACGATGACACTT---ATCACCTTCACTCATG-----AGC--CAGATAGTGTAAAATGAGAAGCAGAGATTTGAAATGTGTTGCAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6129068  91 +   6154872 CCTGAGAGCATAGTACGACGACACTT---ATCACCTTCACTCATG-----AGC--CAGATAGTGTGAAATGAGAAGCAGAGATTTGAAATGTGTTGCAAAA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29879301  94 - 170955103 CCTGGGTGCACAGTATGAAGACACTTCTCATCACCTTCATTTGTG-----AGC--CAGATAGTGTGAAATGAGAAGCAGAGATTTGAAATGTGTTGCAAAA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1      67074  94 -    863181 CTGGGGATCATAGTACGAGGACGCTTCTCATCACCTTCACTCGTG-----AGC--CAGATAGTGTGAAATGAGAAGCAAAGATTTGAAATGTGTTGCAAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29253262  94 -  71996105 CCGGGGATCATAGTACGAGGACACTTCTCATCACCTTCTCTCGTG-----AGC--CAGATAGTGTGAAATGAGAAGCAGAGATTTGAAATGTGTTGCAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      63496  94 +    273075 CCGGGGATCATAGTACGAGGACACTTCTCATCACCTTCACTCGTG-----AGC--CAGATAGTGTGAAATGAGAAGCAAAGATTTGAAATGTGTTGCAAAA
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     565089  99 -   1771730 CCTGGGAGCATAGTACTAAGACACCTCTCATCACCTTCACTCATGACATCAGC--CAGATAGTGTGAGATGCGAAGCAGAGATTTCAAATGTGTTGCAAAA
i cebCap1.NW_016107755v1   N 0 N 0
s aotNan1.NW_018496904v1      55691 101 -    383796 CCTGGGAGCATAGTACAAGGACACTTCTCATCACCTTCACTCATGACATGAGCCACAGATAGTGTGAGATGAGAAGCAGAGATTTGAAATGTGTTGCAAAA
i aotNan1.NW_018496904v1   C 0 I 59775
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=329301.000000
s hg38.chr6_GL000254v2_alt  1124974 121 +   4827813 CTCTCTCAAAGAAAGTAGAGTAATATTTTTCGTGAGCAAATCAAAGCAATCTCCTCACAAATCACATTGGACTTATAATGTGTGGGATGTGTCT--TTATTAAAATGGAGGTAATCCTAGGTA
s panTro5.chr6             30077848 121 + 175400573 CTCTCTCAAAGAAAGTAGAGTAATATTTTTCATGAGCAAATCAAAGCAATCTCCTCACAAATCACATTGGACTTATAATGTGTGGGATGTGTCT--TTATTAAAATGGAGGTAATCCTAGGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30308485 121 + 173848474 CTCTCTCAAAGAAAGTAGAGTAATATTTTTCATGAGCAAATCAAAGCAATCTCCTCACAAATCACATTGGACTTATAATGTGTGGGATGTGTCT--TTATTAAAATGGAGGTAATCCTAGGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6129159 121 +   6154872 CTCTCTCAAAGAAAGTAGAGTAATATTTTCCGTGAGCAAATCAAAGCACTCTCCTCACAAATCACATTGGACTTATAATGTGTGGGATGTGTCT--TTATTAAAATGGAGGTAATCCTAGGTA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29879395 121 - 170955103 CTCTCTCAAAGAAAGTAGAGTAATACTCCCCAGGACCCAATCAAAGCAATCTCCTCACAAATGACATTGGACTTACAATGTGTGGGATGTGCCT--TTATTAAAATGGAGTTAATCCTAAGTA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1      67168 120 -    863181 CTCTCTCAAAGAAAGTAGAGTGGTA-TTCCCATGACCCAATCAAACCAATCTCCTCACAAATCACATTGGACTTACAATGTGTGAGATGTGTCT--TTATGAAAATGGAGTTAATCCTAGGTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29253356 120 -  71996105 CTCTCTCAAAGAAAGTAGAGTGATA-TTCCCATGACCCAATCAAACCAATCTCCTCACAAATCACATTGGACTTATAATGTGTGGGATGTGTCT--TTATTAAAATGGATTTAATCCTAGGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      63590 120 +    273075 CTCTCTCAAAGAAAGTAGAGTGGTA-TTCCCATGACCCAATCAAACCAATCTCCTCACAAATCACATTGGACTTACAATGTGTGAGATGTGTCT--TTATGAAAATGGAGTTAATCCTAGGTA
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     326728 122 -   1771730 CTCTCTGAAAGACAGTAGAGTAACATTCTACATGAGCAAATCAAAGCAATCTCCTC-CAAATGATTTTGGACTTATGAAGCGTGAAATGTGTGTTCTTACTAAAATGGAGTTAATCCTAGGTA
i cebCap1.NW_016107755v1   N 0 I 691
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      55792 59775 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=473104.000000
s hg38.chr6_GL000254v2_alt  1125095 208 +   4827813 TGTGGTCTTTTTTACATGAACCGTACTGTCACTGGCTCACTAGCTGTCACTTCACCAACAATCATTCCATTTAATAAAAGGGAGAT-CCCCCCATGGGCCAGCATTTCCCAGGTGGAGGCCTCTTGCAGGCATAATCTTCCAACAGAGAATTTCCCTGGGAACCTAGAAAGAAGAGAAGAGGCTCAAGCAAAAAGGATGAAAGAAATAG
s panTro5.chr6             30077969 209 + 175400573 TGTGGTCTTTTTTACATGAACCGTACTGTCACTGGCTCACTAGCTTTCACTTCACCAACAATCGTTCCATTTAATAAAAGGGAGATTCCCCCCATGGGCCAGCATTTCCCAGGTGGAGGCCTCTTGCAGACATAATCTTCCAACAGAGAATTTCCCTGGGAACCTAGAAAGAAGAGAAGAGGCTCAAGCAAAAAGGATGAAAGAAATAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30308606 209 + 173848474 TGTGGTCTTTTTTACATGAACCGTACTGTCACTGGCTTACTAGCTGTCACTTCACCAACAATCGTTCCATTTAATAAAAGGGAGATTCCCCCCATGGGCCAGCATTTCCCAGGTGGAGGCCTCTTGCAGACATAATCTTCCAACAGAGAATTTCCCTGGGAACCTAGAAAGAAGAGAAGAGGCTCAAGCAAAAAGGATGAAAGAAATAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6129280 207 +   6154872 TGTGGTCCTTTTTACATGAACCGTACTGTCACTGGCTCACTGGCTGTCACTTCACCAACAATCGTTCCATTTAATAAAAGGGAGAT--CCCCCATGGGCCAGCATTTCCCAGGTGGAGGCCTCTTGCAGACATAATCTTCCAACAGAGAATTTCCCTGGGAACCTAGAAAGAATAGAAGAGGTTCAAGCAAAAAGGATGAAAGAAATAG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29879516 207 - 170955103 TGTGGTCTTTCAAACATGAACTGTACTGTCACTGGCTCACTAGCTGTCGATCCACCAACAATTGTTCCATTTAATAAAAGGAAGAT-CCCACCACAGGCTAGCATTCTCCCAGTGGAGGTCTCTTGCAGACATAATCTTCCAACAGAGAA-TTCTCTGGGAACCCAGAGGGAAGAGAAGAGGCTTGGGCAAAAAGGACTAAATACATAG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1      67288 207 -    863181 TGTGGTCTTTTTTACATGAACTGTACTGT-AGTGGCTCACTAGCTGTCAATTCACCAACAATCATTCCATTTAATAAAAGGGAGAT-CCCACCACAGGCCAGCATTTCCCAGGTGGAGACCTCTTGCCGACATAATCTTCCAACAGAGAATTTCCCTGGGAACCCAGAGGGAAGAGAAGAGGCTCAGGCAAAGAGGATGAAAGAAATAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29253476 208 -  71996105 TGTGGTCTTTTTTACATGAACTGTACTGTAAGTGGCTCACTAGCTGTCAATTCACCAACAATCATTCCATTTAATAAAAGGGAGAT-CCCACTACAGGCCAGCATTTCCCAGGTGGAGGCCTCTTGCTGACATAATCTTCCAACAGAGAATTTCCCTGGGAACCCAGAAAGAAGAGAAGAGGCTCAGGCAAAAAGGATGAAAGAAATAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      63710 208 +    273075 TGTGGTCTTTTTTACATGAATTGTACTGTAAGTGGCTCACTAGCTGTCAATTCACCAACAATCATTCCATTTAATAAAAGGAAGAT-CCCACCACAGGCCAGCATTTCCCAGGTGGAGACCTCTTGCCGACATAATCTTCCAACAGAGAATTTCCCTGGGAACCCAGAGGGAAGAGAAGAGGCTCAGGCAAAAAGGATGAAAGAAATAG
i manLeu1.NW_012101121v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      55792 59775 -    383796 I
e cebCap1.NW_016107755v1     326850 691 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=494596.000000
s hg38.chr6_GL000254v2_alt  1125303 316 +   4827813 CAACAACggcggggcatggtggctcacacctgtaatcccagcactttgggaggccggagagggtggatcacctgaggtcaggtgttcaagaccagactgcccaacatggggaaactccgtttctact-------------aaaaatacaaaaaattagctgggtgtagtagcgggcgcctgtaatcccagctactctggaggctgaggcaggagaatcgcttgaactcaggaggtggaggttgcagtgagccgagatggtgccactgcactccagcatgggcaacgagagcaaaactccatctaaaaaaaaaaaaaaaaaaaaaaaaa-C
s panTro5.chr6             30078178 308 + 175400573 CAACAACggccgggcatggtggctcacacctgtaatcccagcactttgggaggccgaagagggtggatcacctgaggtcaggagttcaagaccagactgcctaacatggggaaactccgtttctact-------------aaaaatacaaaaacttagctgggcgtagcagcgggcgcctgtaatcccagctactctggaggctgaggcaggagaatcgcttgtactcaggaggtggaggttgcagtgagccgagatggtgccactgcactccagcatgggcaacgagagcaaaactccatctaaaaaaaaaaaaaaaaa---------C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30308815 313 + 173848474 CAACAACggccgggcatggtggctcacacctgtaatcccagcactttgggaggccgaagagggtggatcacctgaggtcaggagttcaagaccagactgcctaacatggggaaactccgtttctact-------------aaaaatacaaaaaattagctgggcgtagtagcaggcgcctgtaatcccagctactatggaggctgaggcaggagaatcgcttgtactcaggaggtggaggttgcagtgagccgagatggtgccactgcactccagcatgggcaacgagagcaaaactccatctaaaaaaataaaataaaa---taaaa-C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6129487 316 +   6154872 CAACAACggccgggcatggtggctcat-cctgtaatcccagcactttgggaggccgaagagggtggatcacctgaggtcaggagttcaagaccagactgcccaacatggggaaactccgtttctact-------------aaaaatacaaaaaattagctgggcgtagtagcgggcgcctgtaatcccagctactctggaggctgaggcaggagaatcgcttgaactcaggaggtggaggttgcagtgagccgagatggcgccactgcactccagcctgggcaacgagagcaaaactccgtctaaaaaaaaaaaaaaaaaaaaaaaaaCC
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002535v1      67495 328 -    863181 CAATCACAgctgggcacggtggctcacacctgtaatcccagcgtttgggaagaccgaggagggtggatcacctgaggtcaggagtttaagatgagcctgcccaacatggcgaatc-ctgtttctacttaaaaaaaaaaaaaaaaatccaaaaaatgagccaggtgtggtagcaggctcctgtaatcccagctactccggatgctgaggcagaagaatcgcttgaacccgggaggtggaggttgcattgagccaagatggtgccactgcactccagtctgggcgacaagggcaaaagtccatatcaaaattaaaacaaaaggaaagaaa-T
i cerAty1.NW_012002535v1   C 0 I 2
s chlSab2.chr17            29253684 323 -  71996105 CAACCACggctgggcacggtggcttagacctgtaatcccagcgctttgggaggccgaggagggtggatcacctgaggtcaggagttcaagacgagcctgcccaacatggcgaatc-ctgtttctact-----aaaaaaataaaaataaaaaaaatgagccaggtgtggtagcaggcgcctgtaatcccagctactctggaggctgaggcagaagaatcgcttgaactcgggaggcggaggttgcattgagccaagatggcgccactgcactccagtctgggcgacaagggcaaaagtccatatcaaaattaaaacaaaaggaaagaaa-T
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012101121v1      63918 327 +    273075 CAATCACAgctgggcacggtggctcacacctgtaatcccagcatttgggaagaccgaggagggtggatcacctgaggtcaggagttcaagatgagcctgcccaacatggcgaatc-ctgtttctactt-aaaaaaaaaaaaaaaatccaaaaaatgagccaggtgtggtagcaggctcctgtaatcccagctactccggatgctgaggcagaagaatcgcttgaacccgggaggtggaggttgcattgagccaagatggtgccactgcactccagtctgggcgacaagggcaaaagtccatatcaaaattaaaacaaaaggaaagaaa-T
i manLeu1.NW_012101121v1   C 0 I 2
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      55792 59775 -    383796 I
e cebCap1.NW_016107755v1     326850 691 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e macFas5.chr4             29879723   0 - 170955103 C
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=335432.000000
s hg38.chr6_GL000254v2_alt  1125619 157 +   4827813 CAACAGCGATAATATCATACACTGTCATGGtgctatgtgttaatccgtgtccttagcactttcaaaatatgaattcatttaattgtcacgatacatctatggggtgtgcctgctaa-ttttccgttttcaggtgatacaataggaaagaaggtcgcct
s panTro5.chr6             30078486 157 + 175400573 CAACAGCGATAATATCATACACTGTCATGGtgctatgtgttaatctgtgtccttagcactttcaaaatatgaattcatttaattgtcacgatacatctatggggtgtgcctgctaa-ttttccgttttcaggtgatacaataggaaagaagctcgcct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30309128 157 + 173848474 CAACAGCGATAATATCATACACTGTCATGGtgctatgtgttaatctgtgtccttagcactttcaaaatatgaattcatttaattgtcacgatacatctatggggtgtgcctgctaa-ttttccgttttcaggtgaTACAATAGGAAAGAAGCTCGCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6129803 157 +   6154872 CAACAGCGATAATATCATACACTGTCGTGGtgctatgtgttaatctgtgtccttagcactttaaaaatatgaattcatttaattgtcacgatacatctatggggtgtgcctgctaa-ttttccgttttcaggtgaTACAATAGGAAAGAAGGTCGCCT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29879723 142 - 170955103 CAACAGTGATAATATCATACACTGTCATGGtgctatgtgttagtctgtgtcctcagcactttaaaaatacgaattcatgtaattctc---acaTCTGTATGGGGTG-----------CTTTCCGTTTTCAGGTAATACAATAGGAATGAAGGTCGC--
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1      67825 158 -    863181 CAACAGTGATAATATCATACAGTGTCATGGtgctatgtgttaatttgtgtccttagcactttaaaaatatgaattcatttaattctcacaacacctttatggggtgtacCTGCAAAATTGTCCGTTTTCAGGTGATACAATAGTAATGAAGGTTGCAC
i cerAty1.NW_012002535v1   I 2 C 0
s chlSab2.chr17            29254009 158 -  71996105 CAACAGTGATAATATCATACACTGTCATGGtgctatgtgttaatctgtgtccttagcactttcaaaatatgaattcatttaattctcacaacacctctatggggtgtgcctacaaaattttccattttcaggtgaTACAATAGGAATGAAGGTTGCAC
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012101121v1      64247 158 +    273075 CAACAGTGATAATATCATACACTGTCATGGtgctatgtgttaatttgtgtccttagcactttaaaaatatgaattcatttaattctcacaacacctttatggggtgtacctgcaaaattgtccgttttcaggtgatacaatagtaatgaaggttgcac
i manLeu1.NW_012101121v1   I 2 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      55792 59775 -    383796 I
e cebCap1.NW_016107755v1     326850 691 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=7896.000000
s hg38.chr6_GL000254v2_alt  1125776 3 +   4827813 aca
s panTro5.chr6             30078643 3 + 175400573 aca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30309285 3 + 173848474 ACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6129960 3 +   6154872 ACA
i gorGor5.CYUI01015250v1   C 0 C 0
s cerAty1.NW_012002535v1      67983 3 -    863181 ACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29254167 3 -  71996105 ACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      64405 3 +    273075 aca
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     327541 3 -   1771730 aca
i cebCap1.NW_016107755v1   I 691 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1      55792 59775 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e macFas5.chr4             29879865 0 - 170955103 C
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=9531.000000
s hg38.chr6_GL000254v2_alt  1125779 4 +   4827813 agtc
s panTro5.chr6             30078646 4 + 175400573 agtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30309288 4 + 173848474 AGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6129963 4 +   6154872 AGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29879865 1 - 170955103 ---C
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1      67986 4 -    863181 AATC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29254170 4 -  71996105 AATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      64408 4 +    273075 aatc
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     327544 4 -   1771730 agta
i cebCap1.NW_016107755v1   C 0 N 0
s aotNan1.NW_018496904v1     115567 4 -    383796 AGTC
i aotNan1.NW_018496904v1   I 59775 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=2932268.000000
s hg38.chr6_GL000254v2_alt  1125783 879 +   4827813 gtggtggagctgggcttgcacgcagacaatcctgccccagggccatgct-cA--CATCTCTGCACTATCCAGAATGTGAGGGTGGGTGGAGAGTCCAGCTCAGGGAGAGTGATTGGAGAGACAGAATAATAAGAAGAGTGGGCAGACTGGATCACTCTGATGGTTCTGGGGCTTCTCTTCCAGGAGAGAAGA---CAAAAATTATGTCACCATCAAGGAAAGTATCCAAAATCTCTGGCTTAAACCTGGGCGTCTCCAGCTCTGGGACAGGTGGCTGGGCAGGGAAGACAAACTAAGCCAAGGGCCCAGCTCGGAAGAGTTTCCTTTCCTGAGAATTCTGCAGGAGTTTCCCTGACCTCATGGCCACCTCTCATACTTTGCTCTTG-TTTTTTCCCCAGGGCCGATGAGGGCGTCGTATCTGGTTTCCAGTGGGGTCTAAAGACGCCATCACAGTGAGTGGAGATTGGGCTTCATAAAGTGGGAGATCTCCAGGATCCTTCCTGGAATCCAAGATTCCCAGAGAAGCCGGATCCCGCGTCCCGGAACCCAA--CTCCTGCTGCTCTATGAGCCCTGACCTTGGGG-AGACCTGGGCTAGTGAGGAGAGGATCAAGATGAACT-GGGCTGGGGAGGCAGGAGGTAAAGGGCGGCCTGGAGAGCTCAGCAGCTCCTCCCACGGCTCTTCTGCCCCGGTCTGGGGTCTGCAGACTCCTCAGGTCATATCTCCAAGTA-CGCCGCCCCACGCCACCCTCCCGTGGTCCCTGTCCCTCTGTCCCCTCCCCAGCTCCCCCTACACCGTAAGAAGCTCCC----AGGTAAGCGGCTCCAGGGC------CGGGC-GGTAGGCAGGAGGGAGCCCGGGAGGCTGGGTACCCG----------------------CGGGGAGGCGGAGAGAGC
s panTro5.chr6             30078650 882 + 175400573 gtggtggagctgggcttgcacgcagacaatcctgccccagggccatgct-ca--catcgctgcactaTCCAGAATGTGAGGGTGGGTGGAGAGTCCAGCTCAGGGAGAGTGATTGCAGAGACAGAATAATAAGAAGAGTGGGCAGACTGGATCACTCTGATGGTTCTGGGGCTTCTCTTCCAGGAGAGAAGAAGACAAAAATTACGTCACCATCAAGGAAAGTATCCAAAGTCTCTGGCTTAAACCTGGGCGTCTCCAGCTCTGGGACAGGTGGCTGGGCAGGGAAGACAAACTAAGCCAAGGGCCCAGCTCGGAAGAGTTTCCTTTCCCGAGAATTCTGCAGGAGTTTCCCTGACCTCATGGCCACCTCTCATACTTTGCTCTTG-TTTTTTCCCCAGGGCCGATGAGGGCGTCGTATCTGGTTTCCAGTGGGGTCTAAAGACGCCATCACAGTGAGTGGAGATTGGGCTTCATAAAGTGGGAGATCTCCAGGATCCTTCCTGGAATCCAAGATTCCCAGAGAAGCCGGATCCCGCGTCCCGGAACCCAA--CTCCTGCTGCTCTATGAGCCCTGACCTTGGGG-AGACCTGGGCTAGTGAGGAGAGGATCAAGATGAACT-GGGCTGGGGAGGCAGGAGGTAAAGGGCGGCCTGGAGAGCTCAGCAGCTCCTCCCACGGAGCTTCTGCCCCGGTCTGGGGTCTGCAGACTCCTCAGGTCATATCTCCAAGTA-CGCCGCCCCACGCCACCTTCCCGTGGTCCCTGTCCCTCTGTCCCCTCCCCAGCTCCCCCTACACCGTAAGAAGCTCCC----AGGTAAGCGGCTCCAGGGC------CGGGC-GGTAGGCAGGAGGGAGCCCGAGAGGCTGGGTCCCCG----------------------CGGGGAGGCGGAGAGAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30309292 904 + 173848474 GTGGTGGAGCTGGGCTTGCACGCAGACAATCCTGCCCCAGGGCCATGCT-CA--CATCGCTGCACTATCCAGAATGTGAGGGTGGGTGGAGAGTCCAGCTCAGGGAGAGTGATTGGAGAGACAGAATAATAAGAAGAGTGGGCAGACTGGATCACTCTGATGGTTCTGGGGCTTCTCTTCCAGGAGAGAAGAAGACAAAAATTACGTCACCATCAAGGAAAGTATCCAAAGTCTCTGGCTTAAACCTGGGCGTCTCCAGCTCTGGGACTGGTGGCTGGGCAGGGAAGACAAACTAAGCCAAGGGCCCAGCTCGGAAGAGTTTCCTTTCCCGAGAATTCTGCAGGAGTTTCCCTGACCTCATGGCCACCTCTCATACTTTGCTCTTG-TTTTTTCCCCAGGGCCGATGAGGGCGTCGTATCTGGTTTCCAGTGGGGTCTAAAGACGCCATCACAGTGAGTGGAGATTGGGCTTCATAAAGTGGGAGATCTCCAGGATCCTTCCTGGAATCCAAGATTCCCAGAGAAGCCGGATCCCGCGTCCCGGAACCCAA--CTCCTGCTGCTCTATGAGCCCTGACCTTGGGG-AGACCTGGGCTAGTGAGGAGAGGATCAAGATGAACT-GGGCTGGGGAGGCAGGAGGTAAAGGGCGGCCTGGAGAGCTCAGCAGCTCCTCCCACGGAGCTTCTGCCCCGGTCTGGGGTCTGCAGACTCCTCAGGTCATATCTCCAAGTA-CGCCGCCCCACGCCACCTTCCCGTGGTCCCTGTCCCTCTGTCCCCTCCCCAGCTCCCCCTACACCGTAAGAAGCTCCC----AGGTAAGCGGCTCCAGGGC------CGGGC-GGTAGGCAGGAGGGAGCCCGGGAGGCTGGGTCCCCGCGGGGAGGCGGAGAGAGCGCGTCGGGGAGGCGGAGAGAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6129967 881 +   6154872 GTGGTGGGGCTGGGTTTGCACGCAGACAATCCTGCCCCAGGGCCATGCTGCA--CATCTCTGCACTATCCAGAATGTGAGGGTGGGTGGAGAGTCCAGCTCAGGGAGAGTGATTGGAGAGACAGAATAATAAGAAGAGTGGGCAGACTGGATCACTCTTATGGTTCT-GGGCTCCTCTTCCAGGAGAGAAGAAGACAAAAATTATGTCACCATCAAGGAAAGTATCCAAAGTCTCTGGCTTAAACCTGGGCGTCTCCAG-TCTGGGACAGGTGGCTGGGCAGGGAAGACAAACTAAGCCAAGGGCCCAGATCGGAAGAGTTTCCTTTCCTGAGAATTCTGCAGGAGTTTCCCTGACCTCATGGCCGCCTCTCATACTTCGCTCTTG-TTTTTTCCCCAGGGCCGATGAGGGCGTCGTATCTGGTTTCCAGTGGGGTCTAAAGACGCCATCAGAGTGAGTGGAGATTGGGCTTCATAAAGTGGGAGATCTCCAGGATCCTTCCTGGAATCCAAGATTCCCAGAGAAGCCGGATCCCGCGTCCCGGAACCCAA--CTCCTGCTCCTCTATGAGCCCTGACCTTGGGG-AGACCTGGGCTAGTGAGGAGAGGATCAAGATGAACT-GGGCTGGGGAGGCAGGAGGTAAAGGGCGGCCTAGAGAGCTCAGCAGCTCCTCCCACGGCGCTTCTGCCCCGGTCTGGGGTCTGCAGACTCCTCAGGTCATATCTCCAAGTA-CGCCGCCCCACGCCACCCTCCCGTGGTCCCTGTCCCTCTGTCCCCTCCCCAGCTCCCCCCACACCGTAAGAAGCTCCC----AGGTAAGTGGCTCCAGGGC------CGGGC-GGTAGGCAGGAGGGAGCCCGGGAGGCTGGGTCCCCG----------------------CGGGGAGGCGGAGAGAGC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29879866 883 - 170955103 ATGGTGGAGCTGGGTTTGCATGCAGACAATCCTGACCCGGGGTCATGCT-CA--CGTCTCTGCATTATCCAGAATGTGCGGGTGGGTGGAGAGTCCAGCTCAGGGAGAGAGATTGGAGAGACAGAAGAATAAGAAGAGAGGGCAGAGTGGATCACTCTGGTGGTTCTGGGGTTCCCCTTCCAGGAGAGAAGAAGACAAAAATTATGTCACCATCAAGGAAGATATCCAAAGTCTCTGGCTTAAACCTGAGTATCTCCAGCTCTGGGACAGGTGGCTGGGCAGGGAAGACAAACTAAGCCAAGGACCCAGCTCTGAAGAGTTTCCTCGCCTGAGAATTCTGCAGGAGTTTCCCGGACCTCATGGCCACCTCTCATACTTTGCTCTTG-TTTTTCCCCCAGGACTGATGAGGGCGTTGTATCTGGTTTCCACTGGGGTCTAGAGAAGTCATCAGAGTGAGTGGAGAAAGGGCTTCATAAAGTGGGAGATCTCCATGATTCTCCCTGAACTCCAAGATAACCAGAGAAGCCGGATGCCGCGTCCCGGAACCCCCCACCCCTGCTCCTCTGTGGGCCCTGACCTTGGGG-AGACCTGAGCTGGTGAGGAGAGGATCAGGATGAACTGGGGCTGAGGAGGCAGGAGGGAAAGGGCAACCTTCAGGGCTCAGCAGCTTCCCCCGTGGCGCCTTCGCCCAGAGCTGGCGTCTGCAGACTCCTCAGGTCATTTCTCCAGGCGCCGATGCCCCACGCCACCCTCCCCTGGTCCCCGTTCCTTTGTCCCCTCCCCAGCTCCTCCCACACAGTAAGAAGCTCCT----AGGTGAGCAGCTCCAGGGCC---------T-GGGACGTGGGAGGGAGCCCAGGAGGCTGGGTCCTGG----------------------CAGGGAGGCGGAGCGAGC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1      67990 887 -    863181 GTGGTGGAGCTGGGTTTGCATGCAGCCAATCCTGACCCAGGGTCATGCT-CGCTCATCTCTTCACTGTCCAGGATGTGAGGGTGGGTGGAGATTCCAGCTCAGGGAGAGAGATTGGAGAGACAGAAGAATAAAAAGAGTGGGCAGACAGGATCACTCTGATGGTTCTGGGGCTCCCCTTCCAGGAG---AGAAGACAAAAATTATGTCACCATCAAGGACAGTATCCAAAGTCTCTGGCTTAAACCTGGGCGTTTCCGGCTCTGGGACAGGTGGCTGGGCAGGGAAGACAAACTAAGCCAAGGACCCAGCTCTGAAGAGTTTCCTCGCCTGAGAATTCTGTAGGAGTTTTTCTGACCTCATGGCCACCTCTCATACTTTACTCTTG-TTTTTCCCCCAGGACTGATGAGGGTGTCGTATCTGGTTTCCACTGGGGTCTAGAGAAGCCATCAGAGTGAGTGGAGAATGGGATTCGTAAAGTGGGAGATCTTCGGGATTCtccctgga-tccaagatacccagagaagccggatcccgcatcctggaAGCCCC--ACTCTGCTACTCTGTGGGCCCTGACCTTGGGG-AGACCTGGGCTGTTGAGGAGAGAATGAGGATGAACT-GGGCCGGGGAGGAAGGAGGTAAAGGGCGGCCTGCAGGACTCAGCAGCTCTTGCCGGGGCGCCTCCGCCCCTGGCTGGGGTCTGCAGACTTCTGAGGTCTTATTTCCAAATGCCGCCGTCCCAGGCCACCCTTCCTTGGTCCCTGCCCCTCTGTCCTCTCCCCAGGTCCCCACACACAGTAAGAAACTCCC----AGACGAGCGGCTCCGGgggacgggacgggc-gggacgtgggagggaGCCCGGGAGGCTGGGTCCCGG----------------------CGGGGAGGCAGAGGGAGC
i cerAty1.NW_012002535v1   C 0 N 0
s chlSab2.chr17            29254174 888 -  71996105 GTGGTGGAGCTGGGTTTGCATGCAGCCAATCCTGACCCAGGGTCATGCT-CTCTCATCTCTGCACTGTCCAGAATGTGAGGGTGGGTGGAGAGTCCAGCTCCGGGAGAGAGATTGGAGAGACAGAAGAATAAGAAGAGTGGGCAGATGGGATCACTCTGATGGTTCTGGGGCTTCCCTTCCAGGAG---AGAAGACAAAAATTATGTCACCATCAAGGAAAGTATCCAAAGTCTCTGGCTTAAACCTGGGCGTTTCCGGCTCTGGGACAGGTGGCTGGGCAGGGAAGACAAACTAAGCCAAGGGTCCAGCTCTGAAGAGTTTCCTCTCCTGAGAATTCTGTAGGAGTTTTCCTGACCTCATGGCCACCTCTCATGCTTTACTCTTG-TTTTTCCCCCAGGACTGATGAGGGCGTCGTATCCGGTTTCCACTGGAATCTAGAGAAGCCATCAGAGTGAGTGGAGAACGGGATTCATAAAGTGGGATATCTCCAGGATTCTCCCTGGA-TCCAAGATACCCAGAGAAGTCGGATCCCGCGTCCTGGAACCCCC--ACCCTGCTACTCTGTGGGCCCTGACCTTGGGGAAGACCTGGGCTGTTGAGGAAAGAATCAGGATGAACT-GGGCCGGGGAGGCAGGAGGTAAAGGGCGGCCTGCAGGACTCAGCAGCTCCTGCCGGGGCGCCTCCGCCCCGGGCTGGGGTCTGCAGACTCCTGAGGTCCTATCTCCAAATGCCGCGGTCCCAGGCCACCCTTCCTTGGTACCCGCCCCTCTGTCCTCTCCCCAGGTCCCCACACACAGTAGGAAACTCCC----AGATGAGCGGCTCCGGgggacgggacgggc-gggacgtgggagggaGCCCGGGAGGCTGGGTCCTGG----------------------CGGGGAGGCAGAGGGAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      64412 887 +    273075 gtggtggagctgggtttgcatgcagccaatcctgacccagggtcatgct-cGCTCATCTCTTCACTGTCCAGGATGTGAGGGTGGGTGGAGATTCCAGCTCAGGGAGAGAGATTGGAGAGACAGAAGAATAAAAAGAGTGGGCAGACAGGATCACTCTGATGGTTCTGGGGCTCCCCTTCCAGGAG---AGAAGACAAAAATGATGTCACCATCAAGGACAGTATCCAAAGTCTCTGGCTTAAACCTGGGCGTTTCCGGCTCTGGTACAGGTGGCTGGGCAGGGAAGACAAACTAAGCCAAGGACCCAGCTCTGAAGAGTTTCCTCGCCTGAGAATTCTGTAGGAGTTTTTCTGACCTCATGGCCACCTCTCATACTTTACTCTTG-TTTTTCCCCCAGGACTGATGAGGGTGTCGTATCTGGTTTCCACTGGGGTCTAGAGAAGCCATCAGAGTGAGTGGAGAATGGGATTCGTAAAGTGGGAGATCTTCGGGATTCTCCCTGGA-TCCAAGATACCCAGAGAAGCCGGATCCCGCATCCTGGAAGCCCC--ACTCTGCTACTCTGTGGGCCCTGACCTTGGGG-AGACCTGGGCTGTTGAGGAGAGAATGAGGATGAACT-GGGCCGGGGAGGAAGGAGGTAAAGGGCGGCCTGCAGGACTCAGCAGCTCTTGCCGGGGCGCCTCCGCCCCTGGCTGGGGTCTGCAGACTTCTGAGGTCTTATTTCCAAATGCCGCCGTCCCAGGCCACCCTTCCTTGGTCCCTGCCCCTCTGTCCTCTCCCCAGGTCCCCACACACAGTAAGAAACTCCC----AGACGAGCGGCTCCGGgggacgggacgggc-gggacgtgggagggaGCCCGGGAGGCTGGGTCCCGG----------------------CGGGGAGGCAGAGGGAGC
i manLeu1.NW_012101121v1   C 0 I 65848
s cebCap1.NW_016107755v1     441019 847 -   1771730 GTGGTGGAGCTGGGTTTGCATGCAGACAATCCTGCCCCAGGACCATGCT-CA--GGGCTCTGCACTCTCCAGAATGTGAGGGTGGTTGGAGAGTCCAGCTCAGGGAGGGTGATTGGAGAGACAGAAGAATAAGAAGAGAGGGCAAAGTGGGTCACTCTGACGGTTCTGGGACTCCCCTTCCAGGAGATAAGAAGACAAAAATGATGTCACCATCAAGAAAAACATTCAAAGTCTCTGGCTTAATCCTGGGCATATCCAGTTCTGGGACAGGTGGCTGGGAAGGGAAGAAAAACTAAGACAAGGGCCCAGTTCTGAAGGTTTTCCTCTTCTGAGAATTCTGCCGGAGTTTCCCTGACCTCATGACCACATCTCATCCTTTGCTCTTG-TTTTCCTCCCAGCACTGATGAGGGCGTCCTAT----------CGGGAGTCTAGAGAAGCTGTCAGAGTGAATGGAGAATGGGCTTCATAAAGTGGGAGACCTCCGGGATCCTCCCTGGACCCCGAGATACACGGAGAAGccggatcccggctcccggaacccc---ttcctgctccTCTGTAGGCCCTGAGCTTGGGG-AGACCT-------------------------------GGGCTGTGGAGTCAGGAGGGAAAGGGCGGCCTGCAGGGCTCAGCAGTGCCTCCCCAGGCGCCTTGGCCCCGGGCTGGGGTCTGCAGACTCCTCAGGTCATTTCTTCAGGCGCCGCCGCCCCACGGCACCCTCCCCTGGTCCCTGTCCCTCTGTCCTCTTCCCAGCTCTCCACACAAGGTAAGGAGCTCCCGGCTGGCTGAGCGGCTACAGGGC------CAGGCGGGGATGTGGGAGGGAGCCCGGGAATCTGAGTCCCCG----------------------CGGGGAGACGGAGCGAGC
i cebCap1.NW_016107755v1   N 0 C 0
s aotNan1.NW_018496904v1     115571 854 -    383796 ATGGTGGAGCTGGGTTTGCACGCAGAGAGTCCTGCCCCAGGGCCATGCT-CA--GGGCTCTGCACTCTCCAGAATGTGAGGGTGGGTGGAGAGTCCAGCTCAGGGAGGTTGAATGGAGAGACAGAAGAATAAGAAGAGGAGGCAGAGTGGGTCACTCTGATGTTTCTGGGACTCCCCTTCCAGGAGAGAAGAAGACAAAAATGATGTCACCATCAAGGAAAATATCCAAAGCCTCTGTCTTAATCCTGGGGTTATCCAGCTCTGGGACAGGTGGCTGGGCAGGGAGGACAAACTAAGCCAAGGGCCCAGCTCTGAAGGTTTTCCTCTTCTGAGAATTCTGGCAGAGTTTTCCTGACCTCATGGCCACCTCTCATCCTTTGCTCTTGTTTTTCCCCCCAGGACTAATGAGGGCGTCCTGTCTGGTTTCCACTGGGGTCTAGAGAAACCGTCAGAGTGAGTGGAGAATGGGCTTCATAAAGTGGGAGACCTCCAGGATCCTCCCTGGACTCCAAGATACCCAGAGAAGCCGGATTCCGGTTCCCGGAACCCC---CTACTGCTCCTCTGTGGGCCCTGAGCTTGGGG-AGACCT-------------------------------GGGCTGTGGGGGCAGGAGAGAAAGGGCGGCCTGCAGGGCTCAGCAGCTCCTCCCGCGGCGCCTCGGCCCCGGGCTGGGGTCTGCAGACTCCTCAGGTCATTTCTCCAGGCGCTCCAGCCCCACGGCACCCTCCTCTGGTCCCTGTCCCTCTGTCCTCTCCCCAGCTCTCCACACAAGGTAAGAAACTCCC----GGCTGAGCGACTCCGGGGC------CGGGCGGGGATGTGGGAAGGAGCCCGGGAATCTGAGTCCACG----------------------CGGGGAGGCAGAGCGAGC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=4019.000000
s hg38.chr6_GL000254v2_alt  1126662 2 +   4827813 GC
s panTro5.chr6             30079532 2 + 175400573 GC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30310196 2 + 173848474 GC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6130848 2 +   6154872 GC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29880749 2 - 170955103 AC
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29255062 2 -  71996105 AC
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1     441866 2 -   1771730 GC
i cebCap1.NW_016107755v1   C 0 I 36
s aotNan1.NW_018496904v1     116425 2 -    383796 GC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e manLeu1.NW_012101121v1      65299 65848 +    273075 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=21104.000000
s hg38.chr6_GL000254v2_alt  1126664 13 +   4827813 GTCAGGGAGACAG
s panTro5.chr6             30079534 13 + 175400573 GTCAGGGAGACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30310198 13 + 173848474 GTCAGGGAGACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6130850 13 +   6154872 GTCAGGGAGACAG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29880751 13 - 170955103 GTCGCGGAGACAG
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29255064 13 -  71996105 GTCCCGGAGACAG
i chlSab2.chr17            C 0 N 0
s aotNan1.NW_018496904v1     116427 13 -    383796 GTCCCGGAGACAG
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e cebCap1.NW_016107755v1     441868 36 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e manLeu1.NW_012101121v1      65299 65848 +    273075 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=2916.000000
s hg38.chr6_GL000254v2_alt  1126677 2 +   4827813 GG
s panTro5.chr6             30079547 2 + 175400573 GG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30310211 2 + 173848474 GG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6130863 2 +   6154872 GG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29880764 2 - 170955103 GT
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29133830 2 -  71996105 GG
i chlSab2.chr17            N 0 C 0
s aotNan1.NW_018496904v1     116440 2 -    383796 GG
i aotNan1.NW_018496904v1   C 0 I 68
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e cebCap1.NW_016107755v1     441868 36 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e manLeu1.NW_012101121v1      65299 65848 +    273075 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=5445.000000
s hg38.chr6_GL000254v2_alt  1126679 5 +   4827813 AGCGG
s panTro5.chr6             30079549 5 + 175400573 AGCGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30310213 5 + 173848474 AGCGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6130865 5 +   6154872 AGCGA
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29880766 5 - 170955103 GGTGG
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29133832 5 -  71996105 AGCGG
i chlSab2.chr17            C 0 I 44
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     116442 68 -    383796 I
e cebCap1.NW_016107755v1     441868 36 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e manLeu1.NW_012101121v1      65299 65848 +    273075 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=6006.000000
s hg38.chr6_GL000254v2_alt  1126684 8 +   4827813 GCGGGGTC
s panTro5.chr6             30079554 8 + 175400573 GCGGGGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30310218 8 + 173848474 GCGGGGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6130870 8 +   6154872 GCGGGGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29880771 8 - 170955103 ATGGGGAC
i macFas5.chr4             C 0 I 36
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     116442 68 -    383796 I
e cebCap1.NW_016107755v1     441868 36 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e manLeu1.NW_012101121v1      65299 65848 +    273075 I
e chlSab2.chr17            29133837 44 -  71996105 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=30730.000000
s hg38.chr6_GL000254v2_alt  1126692 19 +   4827813 CCTCTCCAGCCCTCAAGGT
s panTro5.chr6             30079562 19 + 175400573 CCTCTCCCGCCCTCAAGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30310226 19 + 173848474 CCTCTCCCGCCCTCAAGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6130878 19 +   6154872 CCTCTCCCGCCCTCAAGGT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29880815 19 - 170955103 CCTCTCCCGCCCACAATGT
i macFas5.chr4             I 36 C 0
s chlSab2.chr17            29133881 19 -  71996105 CCTCTCCCGCCCCCAATGT
i chlSab2.chr17            I 44 C 0
s cebCap1.NW_016107755v1     441904 19 -   1771730 CCTCTCCTGCTCGCAATGT
i cebCap1.NW_016107755v1   I 36 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e aotNan1.NW_018496904v1     116442 68 -    383796 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e manLeu1.NW_012101121v1      65299 65848 +    273075 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=81768.000000
s hg38.chr6_GL000254v2_alt  1126711 38 +   4827813 GCCGGTTCCCGGGGCCCAGGCTCGCACTCCCGGGTACT
s panTro5.chr6             30079581 38 + 175400573 GCCGGTTCCCGGGGCCCAGGCTCGCACTCCCGGGTACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30310245 38 + 173848474 GCCGGTTCCCGGGGCCCAGGCTCGCACTCCCGGGTACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6130897 38 +   6154872 GCCGGTTCCCGGGGCCCAGGCTCTCACTCCCGGGTACT
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29880834 38 - 170955103 GCCCGTTCCCAGGGTCCAGGCCCGCATTCCTGGGTACT
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29133900 38 -  71996105 GCCCGTTCCCAGGGTCCAGGCCCGGATTCCTGGGTACT
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1     441923 38 -   1771730 GCCCGTTCCCGTCGCCCAGGCCCGCACTCCCGGGCACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     116510 38 -    383796 GCCGGTTCCCGTTTCCCAGGCCCGCACTCCCGGGTACT
i aotNan1.NW_018496904v1   I 68 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e otoGar3.GL873550         17106705 8542 -  18854210 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e manLeu1.NW_012101121v1      65299 65848 +    273075 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=10476.000000
s hg38.chr6_GL000254v2_alt  1126749 3 +   4827813 TGG
s panTro5.chr6             30079619 3 + 175400573 TGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30310283 3 + 173848474 TGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6130935 3 +   6154872 TGG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29880872 3 - 170955103 TGG
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29133938 3 -  71996105 TGG
i chlSab2.chr17            C 0 I 9678
s cebCap1.NW_016107755v1     441961 3 -   1771730 TGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     116548 3 -    383796 TGG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17115247 3 -  18854210 TGG
i otoGar3.GL873550         I 8542 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e manLeu1.NW_012101121v1      65299 65848 +    273075 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=4431.000000
s hg38.chr6_GL000254v2_alt  1126752 2 +   4827813 AG
s panTro5.chr6             30079622 2 + 175400573 AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30310286 2 + 173848474 AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6130938 2 +   6154872 AG
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29880875 2 - 170955103 AG
i macFas5.chr4             C 0 C 0
s cebCap1.NW_016107755v1     441964 2 -   1771730 AG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     116551 2 -    383796 AG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17115250 2 -  18854210 AA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e manLeu1.NW_012101121v1      65299 65848 +    273075 I
e chlSab2.chr17            29133941 9678 -  71996105 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=9752.000000
s hg38.chr6_GL000254v2_alt  1126754 3 +   4827813 GCC
s panTro5.chr6             30079624 3 + 175400573 GCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30310288 3 + 173848474 GCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6130940 3 +   6154872 GCC
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29880877 3 - 170955103 GCC
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29143619 3 -  71996105 GCC
i chlSab2.chr17            I 9678 C 0
s cebCap1.NW_016107755v1     441966 3 -   1771730 GCC
i cebCap1.NW_016107755v1   C 0 I 9513
s aotNan1.NW_018496904v1     116553 3 -    383796 GCC
i aotNan1.NW_018496904v1   C 0 T 50215
s otoGar3.GL873550         17115252 3 -  18854210 GCT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e manLeu1.NW_012101121v1      65299 65848 +    273075 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=1911.000000
s hg38.chr6_GL000254v2_alt  1126757 1 +   4827813 A
s panTro5.chr6             30079627 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30310291 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6130943 1 +   6154872 A
i gorGor5.CYUI01015250v1   C 0 C 0
s macFas5.chr4             29880880 1 - 170955103 A
i macFas5.chr4             C 0 I 1408
s chlSab2.chr17            29143622 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550         17115255 1 -  18854210 A
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e aotNan1.NW_018496904v1     116556 50215 -    383796 T
e cebCap1.NW_016107755v1     441969 9513 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e manLeu1.NW_012101121v1      65299 65848 +    273075 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=443.000000
s hg38.chr6_GL000254v2_alt  1126758 1 +   4827813 G
s panTro5.chr6             30079628 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30310292 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6130944 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17            29143623 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550         17115256 1 -  18854210 A
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e aotNan1.NW_018496904v1     116556 50215 -    383796 T
e cebCap1.NW_016107755v1     441969 9513 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e manLeu1.NW_012101121v1      65299 65848 +    273075 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e macFas5.chr4             29880881 1408 - 170955103 I
e nomLeu3.chr1a            74801735 21965 + 122973662 I

a score=2100.000000
s hg38.chr6_GL000254v2_alt  1126759 1 +   4827813 G
s panTro5.chr6             30079629 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30310293 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1    6130945 1 +   6154872 G
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a            74823700 1 + 122973662 G
i nomLeu3.chr1a            I 21965 C 0
s chlSab2.chr17            29143624 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550         17115257 1 -  18854210 G
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e saiBol1.JH378341            42948 20172 +    515838 I
e aotNan1.NW_018496904v1     116556 50215 -    383796 T
e cebCap1.NW_016107755v1     441969 9513 -   1771730 I
e calJac3.chr4             30281384 10711 + 171630274 I
e colAng1.NW_012115577v1      16294 8101 -   1829203 I
e manLeu1.NW_012101121v1      65299 65848 +    273075 I
e macNem1.NW_012012100v1      69593 2333 +   1495729 I
e macFas5.chr4             29880881 1408 - 170955103 I

a score=9126.000000
s hg38.chr6_GL000254v2_alt   1126760 5 +   4827813 GGAGA
s panTro5.chr6              30079630 5 + 175400573 GGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30310294 5 + 173848474 GGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6130946 5 +   6154872 GGAGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74823701 5 + 122973662 GAAGA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             141027074 5 + 170955103 GAAGA
i macFas5.chr4             n 1408 C 0
s chlSab2.chr17             29143625 5 -  71996105 GGAGA
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550          17115258 5 -  18854210 GCAGT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e aotNan1.NW_018496904v1      116556 50215 -    383796 T
e cebCap1.NW_016107755v1      441969 9513 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e colAng1.NW_012115577v1       16294 8101 -   1829203 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macNem1.NW_012012100v1       69593 2333 +   1495729 I

a score=25300.000000
s hg38.chr6_GL000254v2_alt   1126765 15 +   4827813 GGGAGGACTGTGGCA
s panTro5.chr6              30079635 15 + 175400573 GGGAGGACTGTGGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30310299 15 + 173848474 GGGAGGACTGTGGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6130951 15 +   6154872 GGGAGGACTGTGGCA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74823706 15 + 122973662 GAAAGGACCATGGTG
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             141027079 15 + 170955103 GGGAAAACCATGGTG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1      170826 15 -    863181 GGGAGGACTGTGGCA
i cerAty1.NW_012002535v1   N 0 C 0
s chlSab2.chr17             29143630 15 -  71996105 AGGAGGACAGTGGCA
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550          17115263 11 -  18854210 ---GGGGTCCTGCC-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e aotNan1.NW_018496904v1      116556 50215 -    383796 T
e cebCap1.NW_016107755v1      441969 9513 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e colAng1.NW_012115577v1       16294 8101 -   1829203 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macNem1.NW_012012100v1       69593 2333 +   1495729 I

a score=110905.000000
s hg38.chr6_GL000254v2_alt   1126780 44 +   4827813 GGTGAGGCAAGGAGCTGTCTG---AGCCGCTCAGCAGCCTCCAGGAG
s panTro5.chr6              30079650 44 + 175400573 GGTGAGGCAAGGAGCTGTCTG---AGCCGCTCAGCAGCCTCCAGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30310314 44 + 173848474 GGTGAGGCAAGGAGCTGTCTG---AGCCGCTCAGCAGCCTCCAGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6130966 44 +   6154872 GGTGAGGCAAGGAGCTGTCTG---AGCCGCTCAGCAGCCTCCAGGAG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74823721 44 + 122973662 GGTGAGGCAGGGAGCAGTCTG---AGTTGCCCAGAAGACACCAGGAG
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             141027094 44 + 170955103 TGTGAGGCAGGGAGCAGTCTG---AGTTGCCCAGAAGACAGTCCGAG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1      170841 44 -    863181 GGTGAGGCAAGGAGCTGTCTG---AGCCGCTCAGCAACCTCTAGGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29143645 44 -  71996105 GGTGAGGCAAGGAGCTGTTTG---AGCCACTGAGCAGCCGCCAGGAG
i chlSab2.chr17            C 0 C 0
s aotNan1.NW_018496904v1       66341 44 -    383796 GGTGAGGCAGGGGGCTGTCTG---AGCTGCCCAGCAGCCACCAGGAG
i aotNan1.NW_018496904v1   T 50215 I 78
s otoGar3.GL873550          17115274 45 -  18854210 TGTCAGATGAGGGGATTCCTGTTCAGGGAGTCTGTAGACTGTGAA--
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e cebCap1.NW_016107755v1      441969 9513 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e colAng1.NW_012115577v1       16294 8101 -   1829203 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macNem1.NW_012012100v1       69593 2333 +   1495729 I

a score=135337.000000
s hg38.chr6_GL000254v2_alt   1126824 66 +   4827813 TCAGCTCTCTCCAGGCC-TGTCTTCACTCCAGTGCCTGGTCCTGCCCAGGCCCCCAC-----TCCCACTCTG
s panTro5.chr6              30079694 66 + 175400573 TCAGCTATCTCCAGGCC-TGTCTTCACTCCAGTGCCTGGCCCTACACAGGCCCCCAC-----TCCTACTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30310358 66 + 173848474 TCAGCTATCTCCAGGCC-TGTCTTCACTCCAGTGCCTGGCCCTACACAGGCCCCCAC-----TCCTACTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6131010 66 +   6154872 TCAGCTCTCTCCAGGCC-TGTCTTCACTCCAGTGCCTGGTCCTGCCTAGGCCCCCAC-----TCCCGCTCTG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74823765 72 + 122973662 CCAGCTCTCTGCAGGCCTTGGCTTTGCTTCAGTGCCTGGCCCTGCATAGGCCCCCGCCCCTGTCCCGCTCTG
i nomLeu3.chr1a            C 0 I 14
s macFas5.chr4             141027138 66 + 170955103 ACCGCTCTCTCCAGGCCTTGGCTTTACTTCAGTGCCTGGCCCTGCATAGG-CCCCAC-----GCCTGCCCTG
i macFas5.chr4             C 0 I 19
s cerAty1.NW_012002535v1      170885 66 -    863181 CTAGCTCTCTCCAGGCC-TGTCTTCACTCCAGTGCCTGGCCCGACCTAGGCCCCCAC-----TCCCACTCTA
i cerAty1.NW_012002535v1   C 0 I 84446
s chlSab2.chr17             29143689 66 -  71996105 CCGGCTCTCTCCAGGCC-TGTCTTCACTTCAGTGCCTGGCCCTGCCCAGGCCCCCAC-----TCCTGCTCTG
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550          17115319 60 -  18854210 TTGGCTCCCTCCTGGCG-TGGC------CCAGGCCTCTTCTCTGCCCGCTCTGCTGC-----CCCCACTTTC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e aotNan1.NW_018496904v1       66385 78 -    383796 I
e cebCap1.NW_016107755v1      441969 9513 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e colAng1.NW_012115577v1       16294 8101 -   1829203 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macNem1.NW_012012100v1       69593 2333 +   1495729 I

a score=38401.000000
s hg38.chr6_GL000254v2_alt   1126890 7 +   4827813 CTCTCAA
s panTro5.chr6              30079760 7 + 175400573 CTCTCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30310424 7 + 173848474 CTCTCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6131076 7 +   6154872 CTCTCAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74823851 7 + 122973662 CTCTCAG
i nomLeu3.chr1a            I 14 C 0
s rheMac8.chr4              30598975 7 + 172585720 CTCTCAG
i rheMac8.chr4             N 0 C 0
s macFas5.chr4             141027223 7 + 170955103 CTCTCAG
i macFas5.chr4             I 19 C 0
s macNem1.NW_012012100v1       71926 7 +   1495729 CTCTCAG
i macNem1.NW_012012100v1   I 2333 C 0
s cerAty1.NW_012002535v1      255397 7 -    863181 CTCTCAG
i cerAty1.NW_012002535v1   I 84446 C 0
s chlSab2.chr17             29143755 7 -  71996105 CTCTCAA
i chlSab2.chr17            C 0 C 0
s aotNan1.NW_018496904v1       66463 7 -    383796 CTCTCAG
i aotNan1.NW_018496904v1   I 78 C 0
s otoGar3.GL873550          17115379 7 -  18854210 CTCCCAG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e cebCap1.NW_016107755v1      441969 9513 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e colAng1.NW_012115577v1       16294 8101 -   1829203 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I

a score=947585.000000
s hg38.chr6_GL000254v2_alt   1126897 179 +   4827813 CCTGGCCCCAGACAGGATCCCAAACAACTCCTGTTCCTAATGTGAAAAATGTTTCTGCCGCTTTAGGCAGAACT--TGCTTTAGAGCACTGGCG--CAGACTTCCGCAGGTCTTGTGTCTGAATTTCTTGGCACTGtgtcttttctcacttattcttct-------gcaaggaaggaattatatcactgg
s panTro5.chr6              30079767 179 + 175400573 CCTGGCCCCAGACAGGATCCCAAACAACTCCTGTTCCTAATGTGAAAAATGTTTCTGCCGCTTTAGGCAGAACT--TGCTTTAGAGCACTGGCG--CAGCCTTCCGCGGGTCTTGTGTCTGAATTTCTTGGCACTGTGTCTTTTCTCACTTATTCTTCT-------GCAAGGAAGGAATTATATCACTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30310431 179 + 173848474 CCTGGCCCCAGACAGGATCCCAAACAACTCCTGTTCCTAATGTGAAAAATGTTTCTGCCGCTTTAGGCAGAACT--TGCTTTAGAGCACTGGCG--CAGCCTTCCGCAGGTCTTGTGTCTGAATTTCTTGGCACTGTGTCTTTTCTCACTTATTCTTCT-------GCAAGGAAGGAATTATATCACTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6131083 180 +   6154872 GCTGGCCCCAGACAGGATCCCAAACAACTCCTGTTCCTAATGTGAAAAATGTTTCTGCCGCTTTAGGCGGCACCAGTGCTTTAGAGCACTGGTG--CAGCCTTCCACAGGTCTTGTGTCTGATTCTCTTGGCACTGTGCCTTTT-TCACTTATTCTTCT-------GCAAGGAAGGAATTATATCACTGG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74823858 187 + 122973662 ACTGGCCTCAGACAGAATCCAAACCAACTCCTGTTTCTGATGTGAAAAATGTTCCTGCCAGTTTAGGCAGAGCT--TGCTTTAGAGCACTGGTGCCCAGCCTTCCACAGGTCTTGTGTCTGTTTTTCTTGGCACTGTGTTTCTtctcacttatttttctgaatt-ggcaaggcaggaattacatcactgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30598982 187 + 172585720 CCTGGTCTCAGACACAATCCAGACCAACTCCTGTTTCTGATGTGAAAAATGTTCCTGTCAGTTTAGGCAGAACT--TGCTTCAGAGCACTGGTGCCCAGCCTTCCACAGGTCTTGTGTCTGTTCTTCTCGGCACTGTGTTTCTtctcatgtattcttctgaatt-ggcaaggcaggaattacatcactgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             141027230 187 + 170955103 CCTGGTCTCAGACACAATCCAGACCAACTCCTGTTTCTGATGTGAAAAATGTTCCTGTCAGTTTAGGCAGAACT--TGCTTCAGAGCACTGGTGCCCAGCCTTCCACAGGTCTTGTGTCTGTTTTTCTCGGCACTGTGTTTCTtctcatgtattcttctgaatt-ggcaaggcaggaattacatcactgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1       71933 187 +   1495729 CCTGGTCTCAGACACAATCCAGACCAACTCCTGTTTCTGATGTGAAAAATGTTCCTGTCAGTTTAGGCAGAACT--TGCTTCAGAGCACTGGTGCCCAGCCTTCCACAGGTCTTGTGTCTGTTCTTCTCGGCACTGTGTTTCTtctcatgtattcttctgaatt-ggcaaggcaggaattacatcactgg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      255404 183 -    863181 CCTGGTCTCAGACACAATCCAGACCAACTCCTGTTTCTGGTGTGAAAAATGTTCCTGTCCGTTTAGGCAGAACT--TGCTTCAGAGCACTGGTACCCAGCCTTCCACAGGTCTTGTGTCT----TTCTCGGCACTGTGTTTCTtctcatgtattcttctgaatt-ggcaaggcaggaattacatcactgg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29143762 179 -  71996105 CCTGGCCTCAGACAGGATCTTGAAAAACTCCTATTCCTAATGTGAAAAATGTTTCTACCAGTTTAGGCAGAACT--TGCTTTAGAGCACTGGTGCCCAGCCTTCCACAGGTC--GTGTCTGTTTTTCTTGACACTGTGTCTTTTTTCATTTATTCTTct-------gcgaggaaggaattatatcactgg
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1      451482 187 -   1771730 CCTGGACCCAGACAGAATCCAGAACAACTCCTGTTCCTTATCTGAAAAACGTTCCTGCCAGTTTAGGTACAGCT--TGCTTTGGAGCACTGG-GCCTGGCCTTCCGCAGGTCTTCTGTCTGCTTCTCTTGGCATTGTGTCTCTtctcacttattctcctgaatgctgcaaggaaggaattacatcactgg
i cebCap1.NW_016107755v1   I 9513 I 986
s aotNan1.NW_018496904v1       66470 187 -    383796 CCTGGCCCCAGACAGAATCCAGAACAACTCCTGTTCCTGATCTGAAAAACGTTTCCGCCAGTTTAGGTACAGCT--TGCTTTAGAGCACTGG-GCCCGGCCTTCCGCAGGTCTTCTGTCTGTTTCTCTTGGCATTGTGTCTCTTCTCACTTATTCTCCTGAATTCTGCAAGGAAGGAATTACATCACTGG
i aotNan1.NW_018496904v1   C 0 I 68204
s otoGar3.GL873550          17115386 182 -  18854210 CCTGGCCCCAGACAGAGTCCAG---AGCTCCTGCTCCTGATCTGGAAAATGTTCCTGCCAGTTCAGGCAGAACT--TGCTGGAGAACAC-GGTG-CCAGCCGGCTGTAGGTG-TATGTTTGGTTCTCTCTGCACCGCGTCTTTTCTCACTTACTCCTGTCCTCTCTGCAAGGCAGGAATTACACCACTGA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e calJac3.chr4              30281384 10711 + 171630274 I
e colAng1.NW_012115577v1       16294 8101 -   1829203 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I

a score=758502.000000
s hg38.chr6_GL000254v2_alt   1127076 194 +   4827813 ----tt---ggatgagacaattggctcagatgggttcattgagcactcacccaCTGGGCAAGTGTCTGTCGGGGCCAGCTCTGGGCCAgatgtgcccaaggctctatagctagttggtggaaaggcctggagggttcatattcaagtccacctgacttgaaaactcatattGA---CCTTACTTAAGTACTGATTCCCCCTTTA
s panTro5.chr6              30079946 194 + 175400573 ----TT---GGATGAGACAATTGGCTCAGATGGGTTCATTCAGCACTCACCCACTGGGCAAGTGTCTGTTGGGGCCAGCTCTGGGCCAgatgtgcccaaggctctatagctagctggtggaaaggcctggagggttcatattcaagtccacctgacttgaaaactcatattGA---TCTTACTTAAGTACTGATTCCCCCTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30310610 194 + 173848474 ----TT---GGATGAGACAATTGGCTCAGATGGGTTCATTCAGCACTCACCCACTGGGCAAGTGTCTGTTGGGGCCAGCTCTGGGCCAgatgtgcccaaggctctatagctagctggtggaaaggcctggagggttcatattcaagtccacctgacttgaaaactcatattGA---TCTTACTTAAGTACTGATTCCCCCTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6131263 194 +   6154872 ----TT---GGGTGAGGCAACTGGCTCAGAGGGGTTCATTCAGCACTCACCCACTGGGCAAGTGTCTGTTGGGGCCAGCTCTGGGCCAgatgtgcccaaggctctatagctagttggtggaaaggcctggagggttcatattcaggtccacctgacttgaaaactcatattGA---CCTTACTTAAGTACTGATTCCCCCTTTA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74824045 197 + 122973662 ----tttgcagaggaggaaactgactcatatgggttCATTCAGCACTCACTCACTGTAAAAGTGTCTGTCAGGGACAACTGTGGGCCAgatgtgcccagggctctacagctagctggtagaagggcctggagggttcatattcaggtccatctgacttgaaaacTGATATTGA---CCTTACTTAAGTACTGATTCCCGCTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30599169 195 + 172585720 ----tttgcagatgaggaaacggactcatataggttCATTCAGCACTCACTTACTGGGCAAGTGTCTGTCAGGGCCAACTGTGGGCCAGATGTGCCCAGGGCTCTATAGCTAGCTGGTGGAAGGGCCTGGAGGGTTCATATTCAGGTTCAC--AGATTGAAAACTCATATTGA---CCTTACTTAAGCACTGATTCCCGCTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             141027417 195 + 170955103 ----tttgcagatgaggaaacggactcagatgggttCATTCAGCACTCACTCACTGGGCAAGTGTCTGTCAAGGCCAACTGTGGGCCAGATGTGCCCAGGGCTCTATAGCTAGCTGGTGGAAGGGCCTGGAGGGTTCATATTCAGGTTCAC--AGATTGAAAACTCATATTGA---CCTTACTTAAGCACTGATTCCTGCTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1       72120 195 +   1495729 ----tttgcagatgaggaaacggactcagatgggttcattcagcactcactcactgggcaagtgtctgtcagggccaattgtgggccagatgtgcccagggctctatagcTAGCTGGTGGAAGGGCCTGGAGGGTTCATATTCAGGTTCAC--AGATTGAAAACTCATATTGA---CCTTACTTAAGCACTGGTTCCCGCTTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      255587 195 -    863181 ----tttgcagatgaggaaactgactcatacgggttCATTCAGCACTCACTCACTGGGCAAGTGTCTGTCAGGGCCAACTGTGGGCCAgatgtgcccagggctctatagctagctggtggaagggcctggagggttcatattcaggttcac--agattgaaaactcatattgg---ccttactgaagcacTGGTTCCTGCTTTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29143941 197 -  71996105 ----tttgcggatgaggaaattggctcaATTGGGTTCATTCAGCACTCACCCACTGGCCAAGTGTCTGCTTGCGCCAGCTGTGGGTCAGATGTACTCAAGGCTCTATAGCTAACTGGTGGAAAGGCCTGGAGGGCTCATATTCAGGTTCACTTAACTCGAAAACTCATATTGA---CCTTACTTAAGTACTGATTCCTGCTTTG
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550          17115568 203 -  18854210 CTGGTTAGCAGTTGAGAAACCTGCCTCAGATAGTTGCATTCAGGGCTCACTCATGGGGCAGGTGTCTGTC-GGGCCAGATCTGGGCCCGATGTGCTGAAAGTTCCTCAGCTGGTTGATAGAAGAGGTTGGAAGGATCATGCCCAGGTGCACCTGACTTAAAACCTCGTACTCACCGCCCTGGTCAGGTACTGATTTCCTCTCTG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e cebCap1.NW_016107755v1      451669 986 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e colAng1.NW_012115577v1       16294 8101 -   1829203 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I

a score=5040.000000
s hg38.chr6_GL000254v2_alt   1127270 2 +   4827813 Ta
s panTro5.chr6              30080140 2 + 175400573 Ta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30310804 2 + 173848474 Ta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6131457 1 +   6154872 -a
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74824242 2 + 122973662 ca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30599364 2 + 172585720 ca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             141027612 2 + 170955103 ca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1       72315 2 +   1495729 CA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      255782 2 -    863181 ca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29144138 2 -  71996105 ca
i chlSab2.chr17            C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17115771 0 -  18854210 C
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e cebCap1.NW_016107755v1      451669 986 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e colAng1.NW_012115577v1       16294 8101 -   1829203 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I

a score=400894.000000
s hg38.chr6_GL000254v2_alt   1127272 120 +   4827813 atccatgccataaacttcattgtcttattttaagaaattgccacagcagcctttagcaaccaccctcttgaa----cagccggtagtcatcaacattgaggcaagaccctcctccagcaaaaag
s panTro5.chr6              30080142 120 + 175400573 atccatgccataaacttcattgtcttattttaagaaattgccacagcagcctttagcaaccaccctcttgaa----cagccggcagtcatcaacattgaggcaagaccctcccccagcaaaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30310806 120 + 173848474 atccatgccataaacttcattgtcttattttaagaaattgccacagcagcctttagcaaccaccctcttgaa----cagccggcagtcatcaacattgaggcaagaccctcccccagcaaaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6131458 123 +   6154872 atccatgcca-aaacttcactgttttattttaagaaattgccacagcagcctttagcaaccaccctcttgaacagccagccggcagtcatcaacattgaggcaagaccctgccccagcaaaaag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74824244 117 + 122973662 atccatgccacgaactttattgtcatatctaaagaagttaccacagcagcctttagcaaccaccctcctgat----cagccaatag---tcaacactgaggcaagaccctcccccagcaaaaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30599366 105 + 172585720 atccatgccacaaactttattgtc-----ttaagaagttgccacagcagcccccg----------ttgtggt----cagtcagcagtcatcaacattgaggcaagaccctcctccagcaaaaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             141027614 105 + 170955103 atccatgccacaaactttattgtc-----ttaagaagttgccacagcagcccccg----------ttgtggt----cagtcagcagtcatcaacattgaggcaagaccctcctccagcaaaaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1       72317 105 +   1495729 ATCCATGCCACAAACTTTATTGTC-----TTAAGAAGTTGTCGcagcagcccccg----------ttgtggt----cagtcagcagtcatcaacattgaggcaagaccctcctccagcaaaaat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      255784 104 -    863181 atccatgccacaaactttattgtc-----ttaagaagttgccacagc-gcccccg----------ttgtggt----cagtcagcagtcatcaacattgaggcaagaccctcgtccagcaaaaat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29144140 120 -  71996105 atccacgccacaaactttattgtcttattttaagaaattgtcacagaagcctctaggaaccacgctcctgat----cagccagcagtcatcaacactgaggcaagaccctcccccagcaaaaag
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1      452655 118 -   1771730 atccgtgccacagacttcattgtcccattttgagaaattgccg--gcagttttcagcaaccaccctcttgac----cagtcagcagtcatcagcactgaggcaagagcctgtacctacaaaaac
i cebCap1.NW_016107755v1   I 986 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17115771   0 -  18854210 C
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e colAng1.NW_012115577v1       16294 8101 -   1829203 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I

a score=749626.000000
s hg38.chr6_GL000254v2_alt   1127392 232 +   4827813 attaaaattagctgaagcctcagacgaccgttagcattttttagcaatagagtaattttaaattaaggtatgtacatagttc-tttcatacataatgctattgtacacttactaggctacagtagagtgtgaatataacttttatatgtactggaaaaacaaaaattt-gtgtgacttg-tttgttgcc-------atggcctgaaaccaaatctgcagtatctctgaggtatgtctATAAT
s panTro5.chr6              30080262 232 + 175400573 attaaaattagctgaagcctcagatgactgttagcattttttagcaatagaataattttaaattaaggtatgtacatagttc-tttcatacataatgctattgtacacttaataggctacagtagagtgtgaatataacttttatatgtactggaaaaacaaaaattt-gtgtgacttg-tttgttgcc-------atggtctgaaaccaaatctgcagtatctctgaggtatgtctATAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30310926 232 + 173848474 attaaaattagctgaagcctcagatgactgttagcattttttagcaatagaataattttaaattaaggtatgtacatagttc-tttcatacataatgctattgtacacttaataggctacagtagagtgtgaatataacttttatatgtactggaaaaacaaaaattt-gtgtgacttg-tttgttgcc-------atGGTCTGAAACCAAATCTGCAGTATCTCTGAGGTATGTCTACAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6131581 232 +   6154872 attaaaattagctgaagcctcagacgaccattagcattttttagcaatagagtaattttaaattaaggtatgtacatagttt-tttcatacataatgctattgtacacttaataggctacagtagagtgtgaatataacttttatatgtactggaaaaacaaaaattt-gtgtgacttg-tttgttgcc-------atggtctgaaaccaaatctgcagtatctctgaggtatgtctATAAT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30599471 232 + 172585720 attagtattagctgaaggctctgatgactgtttgcattttttagcagtagtataattataaattaaggtatgtacatatcta-ttttatacataatgttattgtacacttaatagtctataatagagtataaatataatttttatatgcactgcaaaaccaaaacaat--tgtgacttgttttgttggc-------atggtctgaaaccaaatctgcaataactctgaggtgtgtctgTAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             141027719 232 + 170955103 attagtattagctgaaggctctgatgactgtttgcattttttagcagtagtataattataaattaaggtatgtacatatcta-ttttatacataatgttattgtacacttaatagtctacaatagaatataaatataatttttatatgcactgcaaaaccaaaacaat--tgtgacttgttttgttggc-------atggtctgaaaccaaatctgcaataactctgaggtatgtctgTAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1       72422 232 +   1495729 attagtattagctgaagcctctgatgactgtttgcattttttagcagtagtataattataaattaaggtatgtacatatcta-ttttatacataatgttattgtacacttaatagtctataatagagtataaatataatttttatatgcactgcaaaaccaaaacaat--tgtgacttcttttgttgGC-------ATGGTCTGAAACCAAATCTGCAATAACTCTGAGGTATGTCTGTAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      255888 232 -    863181 attagtattagctgaagcctctgatgactgtttgcattttttagcagtagtataattataaattaaggtatgtacatatcta-ttttatacataatgttattgtacacttaatagtctacaatagaatataaatataatttttatatgtactgcaaaaccaaaacaat--tgtgacttgttttgttggc-------atggtctgaaaccaaatctgcaataactctgaggtgtgtctgTAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29144260 240 -  71996105 attaagatgagccgaagcctcagacgatcgttagcatttttcagcaatagagtaattttaaattaatgtatctgcatagttc-ttttacacataatgttattatacatttagtaggctacagtagagtataaatataatttttatattcactggaaaaacaaaaattt-gtgtgacttgctttgttgccatggtctatggtctgcaaccaaatctgcagtgtctcagatgtatgtctACAAT
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1      452773 235 -   1771730 attaggattagctgaagcctcagatgattgttagcattttttagaaataaagtgattttacattaaggtatatacatagctcatttaatacataatggtattgtacacttaatagactacagtagagtgtaaatatgacttttgtacgcactagataaacaaaaaacttgtgtgacttgctttgttgtc-------ctggtctggaaccaaatctgcaaaatctccaaggtatgtctgTCAT
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17115771   0 -  18854210 C
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e colAng1.NW_012115577v1       16294 8101 -   1829203 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e nomLeu3.chr1a             74824361   0 + 122973662 C

a score=248780.000000
s hg38.chr6_GL000254v2_alt   1127624 68 +   4827813 TTCCCTTT--CCCTCTTT--------------TGAACTTG-TTCTTGTCCTTGTCTGGTCCTGCAAGCTGTATGAGTTTGCCTTC
s panTro5.chr6              30080494 69 + 175400573 TTCCCTTT--CCCTCTTT--------------TGAACTTGTTTCTTGTCCTTGTCTAGTCCTGCAAGCTGTATGAGTTTGCCTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30311158 69 + 173848474 TTCCCCTT--CCCTCTTT--------------TGAACTTGTTTCTTGTCCTTGTCTAGTCCTGCAAGCTGTATGAGTTTGCCTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6131813 69 +   6154872 TTCCCTTT--CCCTCTTC--------------TGAACTTGTTTTTTGTCCTTGTCTAGTCCTGCAAGCTGTATGAGTTTGCCTTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30599703 83 + 172585720 TTCCCTTT--CCCTCTTCTTGCTGGCCCAGAATGACCTTGTTTCTTGTCCCTGTCTAGCCCTGCATGCTGTAGGGGTTTGCTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             141027951 83 + 170955103 TTCCCTTT--CCCTCTTCTTGCTGGCCCAGAATGACCTTGTTTCTTGTCCCTGTCTAGCCCTGCATGCTGTAGGGGTTTGCTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1       72654 83 +   1495729 TTCCCTTT--CCCTCTTCTTGCTGGCCCAGAATGACCTTGTTTCTTGTCCCTGTCTAGCCCTGCATGCTATAAGGGTTTGCTTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      256120 83 -    863181 TTCCCTTT--CCCTTTTCTTGCTGGCCCAGAATGACCTTGTTTCCTGTCCCTGTCTAGCCCTGCATGCTATAAGGGTTTGCTTTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29144500 82 -  71996105 TTCCCTTT--CCCTCCTCTTGC-GGCCTAGAATGAACTTGTTTCTGGTCTGTGTCTAGCTCTGCATGCTGTAGGGGTTTGCCTTC
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1      453008 82 -   1771730 TTCCCTTT--CCCTCTTCTTGTTGGCTAAGAATGACCTTGTTTCTTG-CCCTGTCTAGCCCTTCGTGCTGTAGGAGTTTGTCTTC
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550          17115771 84 -  18854210 TTCCCTTTTCCTCTCTTCTTTCTTAGATAGGATGACCTTATTTCTTGTCCCTGATTTGCACAGAATGTTG-GCAGGTTTTCCTTC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e colAng1.NW_012115577v1       16294 8101 -   1829203 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e nomLeu3.chr1a             74824361  0 + 122973662 C

a score=1994542.000000
s hg38.chr6_GL000254v2_alt   1127692 458 +   4827813 TCTGGTAGGTCTGGGGACATTGTATCCCTTATAACCTTGGTTCCTGGCATATGACACTGGTAC------CAAGCTCTGTTGGACTAGTGAGGCTCCCCACACACCTCCTGAACTAGAGCAAAAGCTCTGTGCACACACCGTGCATGTGTGAG----CCTGTGAGGAGACGGGGCCTTCCTGCAGGCTGTTCTGAAGGGGTGTTCTGTTGTGACTGGAGGAAATAGCAATGGGCCCCTGGGCAGAAGTGGCTCAGAATGGAATGGATGGCCCCAGTTTTGATCATCTGGGAACAGGAAGATTCTCAGATAAAAACCCATGTTTTAGAAGACAAAACTGCCCAAGAGTGGACAGCAGCTAACCAGTAAGCTATCTGGGATATCACTGTACACTGGGAGGGAAGATGGCCTCTGCCATGGTGTAGGGTGCCT-GACCCAGACAAGGAGGCCTTCCTAGGGGTCAGTGCTTCT
s panTro5.chr6              30080563 458 + 175400573 TCTGGTAGGTCTGGGGACATTGTATCCCTTATAACCTTGGTTCCTGGCATATGACACTGGTAC------CAAGCTCTGTTGGACTAGTGAGGCTCCCCACACACCTCCTGAACTAGAGCAAAAGCTCTGTGCACACACCATGCATGTGTGAG----CCTGTGAGGAGACGGTGCCTTCCTGCAGGCTGTTCTGAAGGGGTGTTCTGTTGTGACTGGAGGAAATAGCCATGGGCCCCTGGGCAGAAGTGGCTCAGAATGGAATGGATGGCCCCAGTTTTGATCATCTGGGAACAGGAAGATTCTCAGATAAAAACCCATGTTTTAGAAGACAAAACTGCCCAAGAGTGGACAGCAGCTAATCAGTAAGCTATCTGGGATATCACTGTACACTGGGAGGGAAGATGGCCTCTGCCATGGTGTAGGGTGCCT-GACCCAGACAAGGAGGCCTTCCTAGGGGTCAGTGCTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30311227 458 + 173848474 TCTGGTAGGTCTGGGGACATTGTATCCCTTATAACCTTGGTTCCTGGCATATGACACTGGTAC------CAAGCTCTGTTGGACTAGTGAGGCTCCCCACACACCTCCTGAACTAGAGCAAAAGCTCTGTGCACACACCGTGCATGTGTGAG----CCTGTGAGGAGACGGTGCCTTCCTGCAGGCTGTTCTGAAGGGGTGTTCTGTTGTGACTGGAGGAAATAGCCATGGGCCCCTGGGCAGAAGTGGCTCAGAATGGAATGGATGGCCCCAGTTTTGATCATCTGGGAACAGGAAGATTCTCAGATAAAAACCCATGTTTTAGAAGACAAAACTGCCCAAGAGTGGACAGCAGCTAATCAGTAAGCTATCTGGGATATCACTGTACACTGGGAGGGAAGATGGCCTCTGCCATGGTGTAGGGTGCCT-GACCCAGACAAGGAGGCCTTCCTAGGGGTCAGTGCTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6131882 457 +   6154872 TCTGGTAGGTCTGGGGACATTGTATCCCTTATAACCTTGGTTCCTGGCATATGACACTGGTAC------CAAGCTCTGTTGGACTAGTGA-GCTCCCCACACACCTCCTGAACTAGAGCAAAAGCTCTGTGCACACACCGTGCATGTGTGAG----CCTGTGAGGAGACGGTGCCTTCCTGCAGGCTGTTCTGAAGGGGTGTTCTGTTGTGACTGGAGGAAATAGCCATGGGCCCCTGGGCAGAGGTGGCTCAGAATGGAATGGATGGCCCCAGTTTTGATCATCTGGGAACAGGAAGATTCTCAGATAAAAACCCATGTTTTAGAAGACAAAACTGCCCAAGAGTGGACAGCAGCTAACCAGTAAGCTATCTGGGATATCACTGTACACTGGGAGGGAAGATGGCCTCTGCCATGGTGTAGGGTGCCT-GACCCAGACAAGGAGGCCTTCCTAGGGGTCAGTGCTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30599786 462 + 172585720 TCTGGTAGGTCTGGACACTTTTTATCCCTTGCAATCTAGGCTCTTGGCTTATGACACTGGAGCTAGCCTCAACCTCTGTTGGACTAGTGAGCCTCCCTCCACACCTCCTGAACTAGAACCGAAGCTCTGTGCACACACCATTCA--CGTGGG----TCTGTATAGAGATGTCGGCTTCCTGCAGGGTGTTCTGAAAGGGTGTTCTGTTGTGACTGGAGGGCATAGCCACAGGTCTCTGGGCAGAGGTGGCTCAGAAAAGAGTAGATGACCACAGTTTTGGTCGTCTGAGAACAGGAAGATCCTGAGAC-AAAACGCATGCCTTAGAAAACAACACTGCTCCAAAGCTGACAGCGGCTAGCCAGCTTGCTATCTGGGACATCACTCTGCACTGGGGGGCAAGATGGCCGCTGCCATGGTGTAGGGGTCCAGGAACCAGGCGGGGAGGTCTTCCTGTGGGTCAGCGCTTCT
i rheMac8.chr4             C 0 I 14
s macFas5.chr4             141028034 463 + 170955103 TCTGGTAGGTCTGGACACTTTGTATCCCTTGCAATCTAGGCTCTTGGCTTATGACACTGGTACTAGCCTCAACCTCTGTTGGAGTAGTGAGCCTCCCTCCACACCTCCTGAACTAGAACCGAAGCTCTGTGCACACACCATTCA--CGTGGG----TCTGTATAGAGATGTCGGCTTCCTGCAGGGTGTTCTGAAAGGGTGTCCTGTTGTGACTGGAGGCCATAGCCACAGGTCTCCGGGCAGAGGTGGTTCAGAAAAGAGTAGATGACCCCAGTTTTGGTCATCTGGGAACAGGAAGATCCTGAGACAAAAACCCATGCCTTAAAAGACAACACTGCCCCAAAGCTGGCAGCAGCTAAACAGCTTGCTATCTGGGACATCACTCTGCACTGGGGGGGAAGATGGCCGCTGCCATGGTGTAGGGGTCCAGGAACCAGGCGAGGAGGCCTTTCTGTGGGTCAGTGCTTCT
i macFas5.chr4             C 0 I 14
s macNem1.NW_012012100v1       72737 463 +   1495729 TCTGGTAGGTCTGGACACTTTGTATCCCTTGCAATCTAGGCTCTTGGCTTATGACACTGGTACTAGCCTCAACCTCTGTTGGAGTAGTGAGCCTCCCTCCACACCTCCTGAACTAGAACCGAAGCTCTGTGCACACACCATTCA--CGTGGG----TCTGTATAGAGATGTCGGCTTCCTGCAGGGTGTTCTGAAAGGGTGTCCTGTTGTGACTGGAGGCCATAGCCACAGGTCTCCGGGCAGAGGTGGTTCAGAAAAGAGTAGATGACCCCAGTTTTGGTCATCTGGGAACAGGAAGATCCTGAGACAAAAACCCATGCCTTAAAAGACAACACTGCCCCAAAGCTGGCAGCAGCTAAACAGCTTGCTATCTGGGACATCACTCTGCACTGGGGGGGAAGATGGCCTCTGCCATGGTGTAGGGGTCCAGGAACCAGGCGAGGAGGGCTTCCTGTGGGTCAGTGCTTCT
i macNem1.NW_012012100v1   C 0 I 14
s cerAty1.NW_012002535v1      256203 463 -    863181 TCTGGTAGGTCTGGACACTTTGTATCCCTTGCAATCTAGGCTCTTGGCTTATGACACTGGTACTAGCCTCAAGCTCTGTTGGACTAGTGAGCCTCCCTCCACACCTCCTGAACTAGAACCAAAGTTCTGTGCACACACCATTCA--CGTGGG----TCTGTATAGAGATGTTGGCTTCCTGCAGGGTGTTCTGAAAGGGTGTTCTGTTGTGACTGGAGGGCATAGCCACAGGTCTCTGGGCAGAGGTGGCTCAGAAAAGAGTGGATGACCCCAGTTTTGGTCATCTGGGAACAGGAAGATCCTGAGACAAAAACCCATGCCTTAGAAGACAACACTGCCCCAAAGCTGGCAGTGGCTAGCCAGCTTGCTATCTGGGACATCACTCTGCAGTGGGGGGGAAGATGGCCGCTGCCATGGTGTAGGGGTCCAGGAACCAGGCAGGGAGGCCTTCCTATGGGTCAGCACTTCT
i cerAty1.NW_012002535v1   C 0 I 14
s chlSab2.chr17             29144582 448 -  71996105 TCTGGTAGGTCTGGGAACATTGTATCCCTTGTAACCCTGGCTCCTGGCATATGACACTGGTAC------CAAGCTCTGTCGGACTAGTGAGCCTCCCCACACATCTC-----------CAAAAGCTCTGTGCACACACCAAGCATGTGTGAG----CCTGTGAGGAGATGCCGCCTTCCTGAAGGGTGTTCGGAAGGGGTTTTCTGTTGTGACTGGAGGACACAGCCATGAGCCCCTGGGCAGAGGTGGCTCAGAAGGAAGTGGATGGCTCCAGTTTTGATCATCTGGGAACAGGAAGATTCTCAGATAAAAACCCATGTTTTAGAAGACAAAACTGCCCAAGAGAGGACAGCAGCTAACCAGTTTGTTATCTGGGACATCGCTGTGCACTGGGAGGGAAGATGGCCTCTGCCATGGGGTAGGGGTCCTGGACCAAGACAAGGAGGCCTTCCTAGGGGGCAGTGCTTCT
i chlSab2.chr17            C 0 I 349
s colAng1.NW_012115577v1       24395 458 -   1829203 TCTGGTAGGTCTGGACACTTTGTGTCCCTTGTAACCTAGGCTCTTGGCATATGACACTGGTACTAGCCTCAAGCTCTGTTGGACTAGTGAGCCTCCCTCCATACCTCCTGAACTAGAACTGAAGCTCTGTGCACACAGCATTCA--TGTGGG----TCTGTATAGAGAGGTCGGCTTCCTGCAGGGTGTTCTGAAAGGGTGTTCTGTTGTGACTGGAGGGCATAGCCACAGGTCTCTGGGCAGAGGTGGCTCAGAAAAGAGTGGATGACCCCAGTTTTGGTCATCTGGGAACAGGAAGATCCTGAGAC-----CCCATGCCTTAGAAGACAACACTGCCCCAAAGCTGGCAGCAGCTAAACAGCTTGCTATCTGGGACATCACTCTGCACTAGGCGGGAAGATGGCCTCTGCCATGGTGTAGGGGTCCAGGAACCAGGTGGGGAGCCCTTCTTATTGGTCAGTGCTTCT
i colAng1.NW_012115577v1   I 8101 I 14
s cebCap1.NW_016107755v1      453090 447 -   1771730 TCTGGTAGGTTTGGGCACTTTGTATCCCTTGTGACCTTGGCTCCTGGCATATGATACTGGTAC------CAAGCTCTATTGGACTACTGAACCTCCCCGCACACCTCCTGAACTAGAACTGACGCTC-ATGCACACATGGAGCATGTGTGAG----CCTGTGTGGAAATATTGGCTTCCTGCAGCATATTCTGAAGGGATGTCCTGTTGTGAGTGGAGGGCACAGCCACAGGCCCCTGGGCAG---------AGAAGGGAGTAGATGACATCAG--TTGATCATCAGGACACAGGAAGGTCCTCAAACAAAAATCCATGCCTTAGAAGGCAAAACTGCCTGAGAGTGGACAGCTGCTAGCCAGCTTGCTATCTGGGACGTCACTGTGCACTGGGAGGGAAGATGGCCTCTGCCATCGTGTAGGGGGCCAGGGCCCAGGCAGGGAAGCCTTCCTAGTGGTCAGCACTCTT
i cebCap1.NW_016107755v1   C 0 I 14
s otoGar3.GL873550          17115855 462 -  18854210 TCTGCTAGGTCTGGCACCTTTGTGTCAC-TGTAACCTGGGTTCCTGACACATAACACTGGTATAGGCGTCAA-CTTTGCTGTACTGCTGAGCCTCCCCCCCCTCCTCCTGTA-GAGAAGCAAAGCCCCATGTGTGTACCTGGCGTGTGTGAGTGAACCTGTGTACAGATTTCAGCTTCCTGCAGGGTGCTTT-ACAGGGTGTCCTATTGTGAGTAGAGGGCACAGCTACGGGCCCATGGGCAGAGGGACTTGAGAAAACAGTGGATGGTCCCAGTTTAGATGATCTAGGAGAAAGGATGTGCTCAGACAGGAGCACATGCCTGAGAAGGCAGGATTGCTAGAGAGCGGACAGCTGCTCACCAGATTGCCATC-GGGATGTCACTCGAGAGTGGGAGAGAATGTGGCCTCTGTCATGGAAGAGGG-TCCA-GGAAAAGGCAGAGAGAACTTCCTAGTGGTCAGTGGTTCT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e nomLeu3.chr1a             74824361   0 + 122973662 C

a score=1017881.000000
s hg38.chr6_GL000254v2_alt   1128150 225 +   4827813 -------------GAAGCACCTTTAAATGaggacaaatacctcatgttcatgattagccgacttgtgcccactcagtggaaaaagaacccagaat-tttgcaaaat-tttcagagagaggga-ttcccctc----ttgtctcttagtgctagggttatgcatgactcgtgcttgaattacagtgtgtactcagctgaaagtcttaattattagaatataagaggcccaaactactgctgttacag
s panTro5.chr6              30081021 225 + 175400573 -------------GAAGCACCTTTAAATGaggacaaatacctcatgttcatgattagccgacttgtgcccactcagtggaaaaagaacccagaac-tttgcaaaat-tttcagagagaggga-ttcccctc----ttgtctcttagtgctagggttatgcatgactcgtgcttgaattacagtgtgtacacagctgaaagtcttaattattagaatataagaggcccaaactactgctgttacag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30311685 225 + 173848474 -------------GAAGCACCTTTAAATGaggacaaatacctcatgttcatgattagccgacttgtgcccactcagtggaaaaagaacccagaac-tttgcaaaat-tttcagagagaggga-ttcccctc----ttgtctcttagtgctagggttatgcatgactcatgcttgaagtacagtgtgtacacagctgaaagtcttaattattagaatataagaggcccaaactactgctgttacag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6132339 224 +   6154872 -------------GAAGCACCTTTAAATGAGGACAAATACCTCATGTTCATGATTAGCCGACTTGTGCCCACTCAGTGG-AAAAGAACCCAGAAT-TTTGCAAAAT-TTTCAGAGAGAGGGA-TTCCCCTC----TTATCTCttagtgctagggttatgcatgactcatacttgaattacagggtgtacacagctgaaagtcttaattattagaatataagaggcccaaactactgctgttacag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30600262 231 + 172585720 -------------GAATCACCTttagatgaggccaaagacctcacgttcctcactagctgacttattcccactcagtggaaaaagaactcagaaccttcgcaaaat-tttaggagagagaaactttccctctagtttgtctcatagtgctagggttatgcatgactcatgcttgaattgcaatgtggacacagcttccagtcttaattattagaatataagaggcccaaactactgttgttatag
i rheMac8.chr4             I 14 C 0
s macFas5.chr4             141028511 227 + 170955103 -------------GAATCACCTttagatgaggcctaagacctcatgttcctcactagctgacttattcccactcagtggaaaaagaactcagaaccttcgcaaaat-tttaggagagagaaattttcccac----ttgtctcatagtgctagggttatgcatgacgcatgcgtgaactgcaatgtgtacacagcttcacgtcttaattattagaatataagaggcccaaactactgttgttatag
i macFas5.chr4             I 14 C 0
s macNem1.NW_012012100v1       73214 227 +   1495729 -------------GAATCACCTttagatgaggcctaagacctcatgttcctcactagctgacttattcccactcagtggaaaaagaactcagaaccttcgcaaaat-tttaggagagagaaattttcccac----ttgtctcatagtgctagggttatgcatgacgcatgcgtgaactgcaatgtgtacacagcttacagtcttaattattagaatataagaggcccaaactactgttgttatag
i macNem1.NW_012012100v1   I 14 C 0
s cerAty1.NW_012002535v1      256680 227 -    863181 -------------GAATCACCTttagatgaggcctaagacctcacgttcgtcactagctgacttattcccactcagtggaaaaagaactcagaaccttcgcaaaat-tttaggagagagaaactttcccac----ttgtctcatagtgctagggttatgcatgactcatgcgtgaactgcaatgtgtacacagcttccagtcttaattattagaatataagaggcccaaactactgttgttatag
i cerAty1.NW_012002535v1   I 14 C 0
s chlSab2.chr17             29145379 227 -  71996105 -------------GAAGCACCTTTAAATGAGGACAAAGACTTCATGTTCATCATTAGCTGACTTGAACCCACTCAGTGGAAAAAGAAACCAGAACTTTTGCAAAAT-TTTAGGAGAGGGGGACTGTCCGCC----CTGTCTCttagtcctagggttgtgcatgactcatgcttgaattgcaatgtgtacacagcttaaagtcttaattattagaatataagaggcccaaactactgttgttatag
i chlSab2.chr17            I 349 C 0
s colAng1.NW_012115577v1       24867 227 -   1829203 -------------GAATCACCTttagatgaggcctaagacctcacgttcctcaccagctgacttattcccactcagtggaaaaagaacccagaaccttcgcaaaat-tttaggagagagaaactttccctc----ttgtctcatagtgctagggttatgcatgactcatgcttgaattgcaacgtgtacacagcttacagtcttaattattagaatataagaggccaaaactactgttgttatag
i colAng1.NW_012115577v1   I 14 I 473
s cebCap1.NW_016107755v1      453551 227 -   1771730 -------------GAAGCACCTCtagatgaggccagagacctcatattcctcattagctgacttgttcccactcagcagaaaaagaacccagaaactttgtaaaat-tttgcaggagagggactttccctt----ttgactcttagtaccagggttatgcatgacttatacttgcattgtgatgtgtacacagcttgaagtcttaattagtagaatatgagaggcccaaatgactgttgttatag
i cebCap1.NW_016107755v1   I 14 C 0
s otoGar3.GL873550          17116317 215 -  18854210 CACAGTTAGGGGCTGAAAAAATTCAGATGATGACAGAGACCTCACATTCCCCATCAGCTGACTTGTTCCCACTCAGTGGAAAAAGGACCAAGAACGTTTGTAAAATGTTTAGGGGAGAAGAGCTTTCCCTC----TTGTCTTTTGGTGACAGGGTTATGCATGCCTCATGCTTGAAATGCAGTGTGT--------------------------TACAAAAGACATCCAAACTACCACAGTTACAG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e nomLeu3.chr1a             74824361   0 + 122973662 C

a score=1181242.000000
s hg38.chr6_GL000254v2_alt   1128375 276 +   4827813 atatgtaaaactacacagtataagtttaaacaacccacaaccaattaacagtgaagataaattaacaacctttgtaaatttaaaacaagattggcaaccctttaga-----aaaa-------aaatgagactgttgcaaaacaatctaaatgatacactaataacaa--accttcatgaaaat-gacatttcaaccatctgaatTTCTGCTT------------------------------TAAG-------TTATAAACTCCAAAATGAACTAACTCCCAATAATTTACAGTAGGGAGCTCTAAGCCACAAATAAAGGT-GTCAGGA
s panTro5.chr6              30081246 276 + 175400573 atatgtaaaactacacagtataagtttaaacaacccacaaccaattaacagtgaagataaattaacaacctttgtaaatttaaaacaagattggcagccctttaga-----aaaa-------aaatgagacttttgcaagacaacctaaatgatacactaataacaa--accttcatgaaaat-gacatttcaaccatctgaatTTCTGCTT------------------------------TAAG-------TTATAAACGCCAAAATGAACTAACTCCCAATAATTTACAGTAGGGAGCTCTAAGCCACAAATAAAGGT-GTCAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30311910 276 + 173848474 atatgtaaaactacacagtataagtttaaacaacccacaaccaattaacagtgaagataaattaacaacctttgtaaatttaaaacaagattggcagccctttaga-----aaaa-------aaatgagacttttgcaagacaacctaaatgatacactaataacaa--accttcatgaaaat-gacatttcaaccatctgaatTTCTGCTT------------------------------TAAG-------TTATAAACGCCAAAATGAACTAACTCCCAATAATTTACAGTAGGGAGCTCTAAGCCACAAATAAAGGT-GTCAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6132563 276 +   6154872 atatgtaaaactacacagtataagtttaaacaacccacaaccaattaacagtgaagataaattaacaacctttgtaaatttaaaacaagattggcagccctttaga-----aaaa-------aaatgagacttttgcaagacaatctaaatgatacactaataacaa--accttcgtgaaaat-gacatttcaaccatctgaatTTCTGCTT------------------------------TAAG-------TTATAAACGCCAAAATGAACTAACTCCCAATAATTTACAGTAGGGAGCTCTAAGCCACAAATAAAGGT-GTCAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30600493 283 + 172585720 atatgtaaaactacacagtacaaaattaaacaacccacaaccaattaacagtggagataaattaactccatttgtaaatttagaacaagatcgacagtcatttaga-----aaaaaagatacaaataagacttttgcaagacagtctacatgatatgctaataacaa--agcttcatgaaaat-gacatttcaaccatctTAGTTTTGGCTT------------------------------TAGG-------TTATAGACTCCAAAATGGACTAACCCCAAATAATTTACAGTAGGGAGCCCTAAGCCAGAAAGAAAGGT-GTCAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             141028738 287 + 170955103 atatgtaaaactacacagtacaaaattaaacaacccacaatcaattaacagtggagataaattaaccccatttgtaaatttaaaacaggatcgacagtcatttagg-aaaaaaaaaaaatacaaatgagacttttgcaagacagtctatatgatatgctaataacaa--agcttcatgaaaat-gacatttcaaccatctTAGTTTTGGCTT------------------------------TAGG-------TTATAGACTCCAAAATGGACTAACCCCAAATAATTTACAGTAGGGAGCCCTAAGCCAGAAAGAAAGGT-GTCAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1       73441 288 +   1495729 atatgtaaaactacacagtacaaaattaaacaacccacaatcaattaacagtggagataaattaactccatttgtaaatttaaaacaggatcgacagtcatttaggaaaaaaaaaaaaatacaaatgagacttttgcaagacagtctatatgatatgctaataacaa--agcttcatgaaaat-gacatttcaaccatctTAGTTTTGGCTT------------------------------TAGG-------TTATAGACTCCAAAATGGACTAACCCCAAATAATTTACAGTAGGGAGCCCTAAGCCAGAAAGAAAGGT-GTCAGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      256907 287 -    863181 atatgtaaaactacacagtacaaaattaaacaatccacaaccaattaacagtggagataaattaaccccatttgtaaatttaaaacaagatcgacagtcatttaga-aaaaaaaaaaaatacaaatgagacttttgcaagacagtctatatgatatgctaataacaa--agcttcatgaaaat-gacatttcaaccatctTAGTTTTGGCTT------------------------------TAGG-------TTATAGACTCCAAAATGGACTAACCCCAAATAATTTACAGTAGGGAGCCCTAAGCCAGAAAGAAAGGT-GTCAGGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29145606 270 -  71996105 atatgtaaaactacacagtataaggttaaccaacccacaacc-----------------aactaactacatttgtaaatttaaaacaagattggcagtcatttaga-aaaaaaaaacaaaacaaatgagacttttgcaagacaatctaaatggtacactactaacaa--cccttcatgaaaat-gacgtttcaaccatctgAGTTTCTGCTT------------------------------TAAG-------TTATAGACTCCAAAATGGACTAACCGCCAATAATTTACAGTAGGGAGCCCTAAGCCACAAAGAGAGGT-GTCAGGG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1       25567 284 -   1829203 ATATGTAAAACTACACAGTACAAAATTAAACAATCCACAGCCAATTAACAGTGGAGATAAATTAACTCCATTTGTAAATTTAAAACAAGATCGACAGCCATTTAGA----AAAAAAAAATACAAATGAGACTTTTGCAAGACAGCCTATATGATAGGCTAATAACAA--AGCTTCATGAAAAT-GACATTTCAGCCATCTTAGTTTTGGCTT------------------------------TAGG-------TTATAAACTCCAAAATGGACAAACCCCCAATAATTCACAGTAGGGGGCCCTAAGCCAGAAAGAAAGGT-GTCAGGG
i colAng1.NW_012115577v1   I 473 C 0
s cebCap1.NW_016107755v1      453778 278 -   1771730 atatgtgaaactatata-cataaggttaaacaactggcaaccaattaacattgaagataaaatatc-acatttgtaaatttaaaagaatattggcagccactagga-----aaaa--aacacaagtgagacttttacaagacaatataaataatactttgataacaa--tcctttgtgaaaat-gacatttcaaccatcAATGTTTCTGCTT------------------------------TAGG-------TTATAAG-TCCAAAATGGGGTAAACCCCAGTAATTTACATTAGGGAGCTCTAAGCCATAAAGAAAGGC-ATCAGAG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550          17116532 313 -  18854210 ATGTGTGAAACTATCCAGTGTGAAGTAAAGGAACACACCACCGACTAACACCGAAGCTAAACTAACCGCATTTGTAAATT------------AGCACCTACTGAGA----CAAAAGGCCAGCAAATGAGGCTCCTGCAAGAAAATGTAAATCATGTAGTGACCAGAGGTGTCCTTCTGATGCTGGACTTTCCAACCATCTAAGTTTCTTCTTAGATGAACTCTGTTTCTTCCTCCAACCATCTAAACTTCTTCTTATGAACTCTGTAATGGACTGACCCCCAATAATTTATGGTAAGTCATCTTAAACCATAACTTAAAATAGTCTGGA
i otoGar3.GL873550         C 0 I 22835
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e nomLeu3.chr1a             74824361   0 + 122973662 C

a score=200673.000000
s hg38.chr6_GL000254v2_alt   1128651 45 +   4827813 CAGACCTGAGACCTGGAGTGAGCACA-----TCCCTCAGGGTCATGAGTC
s panTro5.chr6              30081522 50 + 175400573 CAGACCTGAGACCTGGAGTGAGCCCATCCCCTCCCTCAGGGTCACGAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30312186 50 + 173848474 CAGACCTGAGACCTGGAGTGAGCACATCCCCTCCCTCAGGGTCACGAGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6132839 50 +   6154872 CAGACCTGAGACCTGGAGTGAGCACATCCCCTCCCTCAGGGTCACGAGTC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30600776 48 + 172585720 CAGACCTGGGACCTGGAGTGAGCACA--CCCTCCCTCAGGGATACAAGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             141029025 48 + 170955103 CAGACCTGGGACCTGGAGTGAGCACA--CCCTCCCTCAGGGTCACGAATG
i macFas5.chr4             C 0 n 0
s macNem1.NW_012012100v1       73729 48 +   1495729 CAGACCTGGGACCTGGAGTGAGCACA--CCCTCCCTCAGGGTCACGAATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      257194 48 -    863181 CAGACCTGGGACCTGGAGCGAGCACA--CCCTCCCTGAGGGTCACGAATG
i cerAty1.NW_012002535v1   C 0 N 0
s chlSab2.chr17             29145876 50 -  71996105 CAGACCTGAGACCTGGAGGGAGCACATCCCCTCCCTCAGGGTCATGAGTG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1       25851 50 -   1829203 CAGACCTGGGACCTGGAATGAACACACACCCTCCCTCAGGGTCACAAATG
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1      454056 49 -   1771730 CAGACCTGAGATCTGGAGTGAGCACA-CCcctccctcagggtcatgagtg
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e nomLeu3.chr1a             74824361  0 + 122973662 C

a score=808071.000000
s hg38.chr6_GL000254v2_alt   1128696 297 +   4827813 AATCCTGTAAGACCCTTCCTCCCTCAGACACTCCATCCAGTCATCAGGAGGTCAAGAAAAGTTCCCCACAGCACTAAGACCCAACCACCTCACTGTCCTCACCTCCATGGACAGAGCCCAGGTGAAAGCCAcccctgctcctcctcccgcatcccccacaggctcagcaccatcgtcggcctggagtgcacctggactgagctcatcatgctctgtccctgtttgtgtcagtcacactgggtcccccacatactctgcacttgcatccccacaaggctctgcacacctctattctgt
s panTro5.chr6              30081572 297 + 175400573 AATCCTGTAAGACCCCTCCTCCCTCAGACACTCCATCCAGTTATCAGGAGGTCAAGAAAAGTTCCCCACAGCACTAAGACCCAACCACCTCACTGTCCTCACCTCCATGGACAGAGCCCAGGTGAAAGCCACCCCTGctactcctcccgcatctctcacaggctcagcaccatcgtcggcctggagtccacctggactgagctcatcatgctctgtccctgtttgtgtcagtcacactgggtcccccacatactctgcacttgcatccccacaaggctctgcacacctctattctgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30312236 297 + 173848474 AATCCTGTAAGACCCCTCCTCCCTCAGACACTCCATCCAGTCATCAGGAGGTCAAGAAAAGTTCCCCACAGCACTAAGACCCAACCACCTCACTGTCCTCACCTCCATGGACAGAGCCCAGGTGAAAGCCAcccctgctcctcctcccgcatctctcacaggctcagcaccatcatcggcctggagtccacctggactgagctcatcatgctctgtccctgtttgtgtcagtcacactgggtcccccacatactctgcacttgcatccccacaaggctctgcacacctctattctgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6132889 297 +   6154872 AATCCTgtaagacccctcctccctcagacactccatccagtcatcaggaggtcaagaaaagttccccacagcactaagacccaaccacctcactgtcctcacctccatggacagagcccagctgaaagccacccctgctcctcctcccgcatctctcacaggctcagcaccatcatcggcctggagtccacctggactgagctcatcatgctctgtccctgtttgtgtcagtcacactgggtcctccacatactctgcacttgcatccccacaaggctctgcacacctctattctgt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30600824 285 + 172585720 AATTCTCTAAGACCCCTCCTGCCTCAGACACTCCATCCA-TCATCAGAAGATC-----------CACACAGCACTAAGACCCAACCACTCCACCGTCCTCACCTCAATGGATAGACCCCAGGTGAGAGCCacccctgctcctcctcccgcttcaaccacagcctcagcaccatcgtcagccttgagtccaccaggactgagctccttatgccctttccctgtttgtgtcagtcacactgggtcccccacattccctgcactcacatccccacaaggctctgcacactcctattctgt
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       73777 285 +   1495729 AATCCTCTAAGACCCCTCCTCCCTCAGACACTCCATCCA-TCACCAGAAGGTC-----------CACACAGCACTAAGACCCAACCACCTCACCATCCTCACCTCCATGGACAGAGCCCAGGTGAGAGCCacccctgctcctcctccctcttcaaccacagcctcagcaccatcgtctgcctcgagtccaccaggactgagctcctcacgccctttccctgtttgtgtcagtcacagtgggtcccccacattccctacacttgcatccccacaaggctccgcacactcctattctgt
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29145926 296 -  71996105 AATCTTCTAAGCCTGCTCCTCCATCAGATACTCCATCCAGTCATCAGGAGGTCAAGAAAAGTT-CCCACAGCACTAAGACCCAACCACCTCACTGTCCTCATCTCCATGGACAGAGCCCAGGTGAGAGCCacccctgctcctcctccctcgtctcccacagcctcagcaccaccgtctgcctcgagtccaccaggactgagctcctcatgtcatttccctgtctgtgtcagtcacactgggtcccccacataccctgtactcacatccccacaaggctctgcacacccctattctgt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1       25901 286 -   1829203 AATCCTCTAAGACCCCTCCTCCCTCAGACACTCCATCCAGTCATCAGAAGGTC-----------CACACAGCACTAAGACCCAACTACCTCACTGTCCTCACCTCCATGGACAGAGCCCAGGTGACAGCCACCCCTGcccgtcctccctcatctcccatagcctcagcaccatcgtctgcctcgagtccaccaggactgagctcctcatgccctttccctgtttgtgtcagtcacactgggtctcccacattccctgcacttgcatccccacaaggctccacacactcctattctgt
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1      454105 284 -   1771730 aatcctctaagacc-ctcctccctcagacactccatccagtcatcaggaggcc-----------cacacagaactgagacccaaccacccctccatcctcacctccatggacagagcccaggtgaaagtca-ccctgctcctcctccctcatctcccacagcctcagcaccattgtcagcctcaagtccactagaaattcgctcattatggcctttccctgtttgtgtcactcatgctgggtccctccaataccctgcattcgcatccacacaaggctctgcacacccctattctgt
i cebCap1.NW_016107755v1   C 0 I 104
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macFas5.chr4             141029073   0 + 170955103 I
e nomLeu3.chr1a             74824361   0 + 122973662 C

a score=20331.000000
s hg38.chr6_GL000254v2_alt   1128993 20 +   4827813 ctccccgacctccccagcca
s panTro5.chr6              30081869 20 + 175400573 ctccccgacctccccagcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30312533 20 + 173848474 ctccccgacctccccagcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6133186 20 +   6154872 ctccccgacctccccagcca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30601109 19 + 172585720 c-cccacaccatgcccccta
i rheMac8.chr4             C 0 N 0
s macNem1.NW_012012100v1       74062 19 +   1495729 c-cccacaccatgcccccta
i macNem1.NW_012012100v1   C 0 I 8
s chlSab2.chr17             29146222 20 -  71996105 ctcccccacctccccagcca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1       26187 19 -   1829203 c-cccacagcatgtccccta
i colAng1.NW_012115577v1   C 0 I 8
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e cebCap1.NW_016107755v1      454389 104 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macFas5.chr4             141029073  0 + 170955103 I
e nomLeu3.chr1a             74824361  0 + 122973662 C

a score=78021.000000
s hg38.chr6_GL000254v2_alt   1129013 41 +   4827813 cagaaatcttcccagtgcaccccctggatttctcagtccac
s panTro5.chr6              30081889 41 + 175400573 cagaaatcctcccagtgcaccccctggatttctcagtccac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30312553 41 + 173848474 cagaaatcctcccagtgcaccccctggatttctcagtccac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6133206 40 +   6154872 cagaaatctt-ccagtgcaccccctggatttctcagtccac
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30470844 40 + 172585720 cagaaatcttcccactgcaccccgtggaatccaca-tccac
i rheMac8.chr4             N 0 I 1
s macNem1.NW_012012100v1       74089 41 +   1495729 cagaaatcttcccactgcaccacttggaatccacagtccat
i macNem1.NW_012012100v1   I 8 I 1
s chlSab2.chr17             29146242 41 -  71996105 cagaaatctttccagtgtaccccatggcactctcagtccac
i chlSab2.chr17            C 0 I 1
s colAng1.NW_012115577v1       26214 41 -   1829203 cagaaatcttcccactgcaccacttggaatccacagtccac
i colAng1.NW_012115577v1   I 8 I 1
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e cebCap1.NW_016107755v1      454389 104 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macFas5.chr4             141029073  0 + 170955103 I
e nomLeu3.chr1a             74824361  0 + 122973662 C

a score=92629.000000
s hg38.chr6_GL000254v2_alt   1129054 55 +   4827813 atca---gcaaaacctcctcagcctctctcaggatgttcctgcatctcacagctccag
s panTro5.chr6              30081930 41 + 175400573 a-----------------tcagcctctctcaggatgttcctgcatctcgcagctccag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30312594 41 + 173848474 a-----------------tcagcctctctcaggatgttcctgcatctcgcagctccag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6133246 41 +   6154872 a-----------------tcagcctctctcaggatgttcctgcatctcgcagctccag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74824361 55 + 122973662 ---atGagcaaaacctccccaccctctctcaggatgctcctgcatctcacagctgcag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30470885 55 + 172585720 ---atcagcaaaacctccttattctttctcaggatgttccatcaccttgaagctctag
i rheMac8.chr4             I 1 C 0
s macNem1.NW_012012100v1       74131 54 +   1495729 ---atcagcaaaacctcctcattc-ttctcaggatgttccctcacctcaaagctctag
i macNem1.NW_012012100v1   I 1 C 0
s chlSab2.chr17             29146284 55 -  71996105 ---atcagcaaaacctccacaccttctctcaggatattcctgcacctcgcagctccag
i chlSab2.chr17            I 1 C 0
s colAng1.NW_012115577v1       26256 55 -   1829203 ---atcagcaaaaccttctcatcttctctcaggatatttcctcaccttgaagctctaa
i colAng1.NW_012115577v1   I 1 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e cebCap1.NW_016107755v1      454389 104 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macFas5.chr4             141029073  0 + 170955103 I

a score=1141132.000000
s hg38.chr6_GL000254v2_alt   1129109 348 +   4827813 cagcaacctgggtctccctgaggacatgaccccctccgaagtcctcccacatgggggagtttccccaggga-cttgtacccctgggttcagaggtgaggtggg------gtccttgctcctcattgtggttctcagaactttctgcctccctcctccctaaaacccctaggctgtcatcagattagagccccatttgcctcactgtaaccattccctgt---gggccccaggctgttcttctcaatcctgagtcttgtagctcctggttcactgtcaccctctccagcattgctgtctccttgactcttggtgacttcaacatacgcaGAtgtggtgggctgagtaatggtccccaaa
s panTro5.chr6              30081971 348 + 175400573 cagcaacctgggtctccctgaggacatgaccccctctgaagtcctcccacatgggggagtttccccaggga-cttctacccctgggttcagaggtgaggtggg------gtccttgctcctcattgtggttctcagaactttctgcctccctcctccctaaaacccctaggctgtcatcagattagggccccatttgcctcactgtaaccattccctgt---gggccccagggtgttcttctcaatcctgagtcttgtagctcctggttcactgtcaccctctccagcagtgctgtctccttgactctcggtgacttcaacatacgcaGAtgtggtgggctgagtaatggtccccaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30312635 348 + 173848474 cagcaacctgggtctccctgaggacatgaccccctctgaagtcctcccacatgggggagtttccccaggga-cttgtaaccctgggttcagaggtgaggtggg------gtccttgctcctcattgtggttctcagaactttctgcctccctcctccctaaaacccctaggctgtcatcagattagggccccatttgcctcactgtaaccattccctgt---gggccccagggtgttcttctcaatcctgagtcttgtagctcctggttcactgtcaccctctccagcagtgctgtctccttgactcttggtgacttcaacatacgcaGAtgtggtgggctgagtaatggtccccaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6133287 347 +   6154872 cagcaacctgggtctccctgaggacatga-cccctccgaagtcctcccacatgggggagtttccccaggga-cttgtacccctgggttcagaggtgaggtggg------gtccttgctcctcattgtggttctcagaactttctgcctccctcctccctaaaatccctaggctgtcatcagattagagccccatttgcctcactgtaaccattccctgt---gggccccaggctgttcttctcaatcctgagtcttgtagctcctggttcactgtcaccctctccagcagtgctgtctccttgactcttggtgacttcaacatacgcaGAtgtggtgggctgagtaatggtccccaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74824416 344 + 122973662 caacaacct-ggtctccctgaggacatgaccccctccgaagtcatcccacatggaggagtttccccaggaa-cttgtacccctgggttcagaggtgaggtggg------gtccttgctcctcactgtggttctcacacctttctccctccctcctccct-aaacccctaagctgtcagcagattggggacccattccccatattgtagccattccctgt---gggccccaagccattcctcttgatcctgacccttgtagctcctggttcactgtcaccctctccagcagtgctgtctcctcgactc--ggtgacttcaacatacacaGAtgtggtgggctgagtaacagtccccaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30470940 346 + 172585720 caggaacc-aggtcttcctgaggatgtggccccctctgaagttcatccgtatggggaagttt-cccaggaa-cttgtacccctgggttcagagctgaggtggg------gtccttgctcctcactgtggttctgagacctttctgcctccttcctccctaaaacccctaagctgtcatcagactagggccccattcccctcattgtggtcattccctgt---gggccccaggccgttcctgtcaatcctgactcttgtagctcctggatcaccatcaccctcttcagcagggctgtctccttaattctttgtgacttcgacatatgcagatatggtgggctgagtactggtccccaaa
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       74185 341 +   1495729 caggaacctgggccttcctgagga-----ccccctctgaagttcctccatatgggggagttt-cccaggaa-cttgtacccctggcttcagagatgaggtggg------gtccttgctcctcactgtggttctcagacctttctgcctccctcctccctaaaacccctaagctgtcatcagacta-ggccccacttccctcactgtagccattctctgt---gggcctcaggccgttcctttcaatcctgactcttgtagctcctggatcaccatcaccgtcttcagcagggctgtctccttgattctttgtgactttgacatatgcagatgtggtgggctgagtaatagtccccaaa
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29146339 351 -  71996105 cagcaacctgagtctccctgaggacgtgaccccctccgaagtcctcccacatcggggcgtttccccaggga-cttgtacccctgggttcagaggtgaggtggggttcttgttcttgctcctcactgtgggtctcagacctttctgccttccgcctccccaaaacccctaagctgtcatcagatta-ggcccccatttcctcattgtaaccattccctgt---aggccccagaccattcctctcaatcctgatgattgtagctgctgcttcactgtcaccctctccagcagggctgtctccttga--cttggtgacttcaacatacgcaGAtgtgctgggctgagtaatggtccccaaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1       26311 344 -   1829203 caggaagc-gagtcttcctga-gatgtgaccccttctgaagttccctcacatgggggagttt-cccaggaa-cttgtactcccgggttcagaggtgaggtggg------atccttgctcctcactgtggttctcagacctttctgcctccctcctccctaaaccccctaagctgtcatcagactagggccccattccgctc-ttgtagccattctctgt---gggacccagaccgttcctgtcaatcctgaatcttgtagctcctggatcaccatcatcctctccagcagtgctgtctccttgattctttgtgactttgacatatgcagaggtCGTGGGCTGAGTACCAGTccccaaa
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1      454493 349 -   1771730 caggaacctgggtcttcctgaagacatgg-cttctcctaagtcttcccacatgggggactttccccaggaatcttgta-ccctgggcccagaggtagggtggg------gtccttgctcttcactgtgattctcagacctttctgcttccctgctccctaaaacccctaagctgttatcag-ttatggtcccactcccctcactgcagccattccctgtgacgggtcccaggccgttactctcaatcctgactcttgtagctcctggttcactgtcaccccctccagcagggctctctccttgatccttggtgagttcaacatatgcagatgtgatgggctgagtgatggtccccaaa
i cebCap1.NW_016107755v1   I 104 I 46
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macFas5.chr4             141029073   0 + 170955103 I

a score=135574.000000
s hg38.chr6_GL000254v2_alt   1129457 50 +   4827813 gatgtccagtcttaatcgttggaacctgtgaacaggttgcattgcgtggc
s panTro5.chr6              30082319 50 + 175400573 gatgtccagtcttaatcgttggaacctgcgaacaggttgcattgcgtggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30312983 50 + 173848474 gatgtccagtcttaatcgttggaacctgcgaacaggttgcattgcgtggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6133634 50 +   6154872 gatgtccagtcttaatcgttggaacctgcgaacaggttgcattgcgtggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74824760 50 + 122973662 gatgtccagtcttaatccttggaaagtgtgaataggttgcattgcatggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30471286 49 + 172585720 gaggtccagtctaagtccttggaa-ctgtgaacaggttgcattacatggc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       74526 50 +   1495729 gaggttcagtcttagcccttggaacctgtgaacagcttgcattacatggc
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29146690 50 -  71996105 ggtgtccagtcttaatccttggaagctgtgatcaggttgcattgcatggc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1       26655 50 -   1829203 gaggtccagtcttagtccttggaatctgtgaacaggttgcattacatggc
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e cebCap1.NW_016107755v1      454842 46 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macFas5.chr4             141029073  0 + 170955103 I

a score=539711.000000
s hg38.chr6_GL000254v2_alt   1129507 158 +   4827813 aaaagggatattactcatgtaatgaagattaaggaccttaaaatagggagattctgctggactctctgtgtgggcccaatcaaatcacaagagccattaaaagcagagagcctgccctggttggagtcagattctgcagaggaggaaggcagaggaga
s panTro5.chr6              30082369 158 + 175400573 aaaagggacattactcatgtaatgaagattaaggaccttaaaatagggagattctgctggactctctgtgtggccccaatcaaatcacaagagccattaaaagcagagagcctgccctggttggagtcagattctgcagaggaggaaggcagaggaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30313033 158 + 173848474 aaaagggacattactcatgtaatgaagattaaggaccttaaaatagggagattctgctggactctctgtgtgggcccaatcaaatcacaagagccattaaaagcagagagcctgccctggttggagtcagattctgcagaggaggaaggcagaggaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6133684 158 +   6154872 aaaagggacattactcatgtaatgaagattaaggaccttaaaatagggagattctgctggactctctgtgtgggcccaataaaatcacaagagccattaaaagcagagagcctgccctggttggagtcagattctgcagaggaggaaggcagaggaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74824810 157 + 122973662 aaaagggatattactcatgtaatgaagattaaggaccttaaaatagggagagtatcctggactctctgtgtgggcccagtcaaaacacatgggccattaaaagcagagaaacagccc-ggctggagtcagattctgcagaggaggaaggcagaggaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30471335 158 + 172585720 aaaagtgtcattactcatgtaatgaagataaaggactttaaaatagggagattatcctagactttctgtgtgggctcaatcaaatcacatgagccattaaaagtagagaatctgctctggatggagtcagatgctgcagaggaggaaggcagaggagg
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       74576 157 +   1495729 aaaagggacattactcatgtaatgaaggtaaaggactttaaaatagggagattatcctggactctctgtgt-ggcccaatcaaatcacatgagccattaaaagtagagaatctgctctggatggagtcagatgctgcagaggaggaaggcaggggaga
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29146740 157 -  71996105 aaaaagtacattactcatgtaatgaagattaaggaccttaaaatagggagactatcctggactatctatgtgggcccaatcaaatcacatgagccattaaaagcagagaaactgccctgactgcagtcagattctgcagaggagtaa-gcagaggaga
i chlSab2.chr17            C 0 I 35909
s colAng1.NW_012115577v1       26705 158 -   1829203 aaaagggatagtattcatgtaatgaagataaaggaccttgaagtagggagattatcctggactctctgtgttggcccaatcaaatcacatgagccattaaaagtagagaatctgctctggatggagtcagatgctgcagagaaggaaggcagaggaga
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1      454888 149 -   1771730 aaaataaacattattcatgtaatgaagattaaggaccttaaaatagggagattatcc-agactatctgtgtgggcccagtcaaatcacatgagccattacacg--------ctgctctggctggagtcagctgctgcagaggaggaaggcagaggaga
i cebCap1.NW_016107755v1   I 46 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macFas5.chr4             141029073   0 + 170955103 I

a score=102417.000000
s hg38.chr6_GL000254v2_alt   1129665 40 +   4827813 agctggagaggagaggtcagaagttccaagcaggagga-tt
s panTro5.chr6              30082527 40 + 175400573 agctggagaggggaggtcagaagttccaagcaggagga-tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30313191 40 + 173848474 agctggagaggggaggtcagaagttccaagcaggagga-tt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6133842 40 +   6154872 agctggagaggggaggtcagaagttccaagcaggagga-tt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74824967 40 + 122973662 cacaaaagaggggaggtcagaagttccaagcaggagga-tt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30471493 41 + 172585720 cacagcaaaggggagatcagaggttccaagcaggaggattt
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       74733 40 +   1495729 cacagcaaaggggagatcagaggttccaaggaggagga-tt
i macNem1.NW_012012100v1   C 0 C 0
s colAng1.NW_012115577v1       26863 40 -   1829203 tatcgcaaaggggagatcagaggttccaagcaggagga-tt
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1      455037 40 -   1771730 cacagcagaggggagatcaaaggttccaagtgggagga-tt
i cebCap1.NW_016107755v1   C 0 I 95
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e chlSab2.chr17             29146897 35909 -  71996105 I
e macFas5.chr4             141029073  0 + 170955103 I

a score=194474.000000
s hg38.chr6_GL000254v2_alt   1129705 98 +   4827813 gaatgtgccttaggcaccgtgtgtgagtatctgagagaaggctctaggagctaagggtggctcttaacaaggaagtggaaacctcttttctatctgca
s panTro5.chr6              30082567 98 + 175400573 gaatgtgccttaggcaccatgtgtgagtatctgagagaaggctctaggagctaagggtggctcttaacaaggaagtggaaacctcttttctatctgca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30313231 98 + 173848474 gaatgtgccttaggcaccatgtgtgagtatctgagagaaggctctaggagctaagggtggctcttaacaaggaagtggaaacctcttttctatctgca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6133882 97 +   6154872 gaatgtgccttaggcaccatgtgtgagtatctgagagaaggctctaggagctaagggtggctcttaacaa-gaagtggaaaccttttttctatctgca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74825007 98 + 122973662 ggatgtgccttaggcgctatgtgtgagtgcctgagagaagtctctgggagctaagggtggctcttaacaagcaagtggaaacttctattctatcggca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30471534 98 + 172585720 ggatgtgctttaggcaccatatgtgagtagcagagagaagtctctaggagctaagggtggctcccaacaagaaagtgggaagctctgttctatatgca
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       74773 98 +   1495729 ggatgtgctttaggcaccatacgtgagtggcagagagaagtctctaggagctaagggtggctcccaacaagaaagtgggaagctctgttctctctgca
i macNem1.NW_012012100v1   C 0 C 0
s colAng1.NW_012115577v1       26903 84 -   1829203 ggatgtgctttaggcac-------------cagagagaagtctctaggatctaagggt-gctctcaaaaaggaagtgggaagctcagttctatctgca
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e cebCap1.NW_016107755v1      455077 95 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e chlSab2.chr17             29146897 35909 -  71996105 I
e macFas5.chr4             141029073  0 + 170955103 I

a score=290528.000000
s hg38.chr6_GL000254v2_alt   1129803 113 +   4827813 aggaagtgaattcaggcaagaacctgaatgagcttggaagtggattcttccccagagtctatggaaaggaatgcagaccttcccgtatgttgatcttagccccatgagactgg-
s panTro5.chr6              30082665 113 + 175400573 aggaagtgaattcaggcaagaacctgaatgagcttggaagtggattcttccccagaatctatggaaaggaatgcagaccttcccgtatgttgatcttagccccatgagactgg-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30313329 113 + 173848474 aggaagtgaattcaggcaagaacctgaatgagcttggaagtggattcttccccagagtctatggaaaggaatgcagaccttcccgtatgttgatcttagccccatgagactgg-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6133979 113 +   6154872 aggaagtgaattcaggcaagaacctgaatgagcttggaagtggattgttccccagagtctatggaaaggaatgcagaccttcccgtatgttgatcttagccccatgagactgg-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74825105 113 + 122973662 aggaagtgaattcagacaagaatctgaatgagcttggaagtggattcttccccagagtctccaggaaggaatgcaggctttcccgtacgttgatcttagccccatgagactgg-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30471632 113 + 172585720 aggaggtgaatgcagacaagaacctgaatgagcttggatgtggattcttccccagaatctccaggaaggaacacagacctgcccataacacgatcttagccccatgagactat-
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       74871 112 +   1495729 aggaggtgaattcagacaagaa-ctgaatgaggctggatgtggattcttccccagaatctccaggaaggaacacagacctgcccataccatgatcttagccccatgacactgt-
i macNem1.NW_012012100v1   C 0 C 0
s colAng1.NW_012115577v1       26987 113 -   1829203 aggaaatgagttcagacaagaacctgaatgagcttggatgtggattcttccccagaatctccaggaaggaacacagacctgcccataccttgatcttacccccatgagactgt-
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1      455172 112 -   1771730 acaaagtgaattccgataagaacctgaataagcttggaagtgcagtcttccccag--tctccatgaaggaacacagacctgcccagatcttgattttactcccttgagactgtg
i cebCap1.NW_016107755v1   I 95 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e chlSab2.chr17             29146897 35909 -  71996105 I
e macFas5.chr4             141029073   0 + 170955103 I

a score=1604907.000000
s hg38.chr6_GL000254v2_alt   1129916 487 +   4827813 gtggacttgcaatccacacgactgtgccatgatacataggtgctgtttaaagccatttggtttgtggtaatttttatg------gcagcaatagaCACCCACACAGCAGAGAAGATGCCCTCGCTTcctggcctctcagatcctggaactcctctcctccatgatcttctcctgtct--gcctgaatctcatgcccttgttatcccctaggcctcatcatggctaagaaccccagcccttccatactctctatctcacactacccactctctgaccatctttccactcatccccttgcaaggtggccacaggctctgaggacacagatactatca-ttttatcatatgctgtgatgtaatatcagtggaccactcattgcatatgtgcttgctttccacgcttggagtctaccctgtagtacatcaattccaacaatcgttccaccctcctgggattcccaatccagtgatcctgccatctactcactgtccctca
s panTro5.chr6              30082778 487 + 175400573 gtggacttgcaatacacacgactgtgccatgatacataggtgctgtttaaagccatttggtttgtggtaatttttatg------gcagcaataCACACCCACACAGCAGAGAAGATGCCCTCGCTTcctggcctctcagatcctggaactcctctcctccatgatcttctcctgtct--gcctgaatctcatgcccttgttatcccctaggcctcatcatggctaagaaccccagcccttccatactctcaatctcacacttcccactctctgaccatctttccactcatccccttgcaaggtggccacaggctctgaggacacagatactatca-ttttatcatatgctgtgatgtaatatcagtggaccactcattgcatatgtgcttgctttccacgcttggagtctaccctgtagtacatcaattccaacaatcattccaccctcctgggattcccaatccagtgatcctgccatctactcactgtccctca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30313442 487 + 173848474 gtggacttgcaatccacacgactgtgccatgatacataggtgctgtttaaagccatttggtttgtggtaatttttatg------gcagcagtaCACACCCACACAGCAGAGAAGATGCCCTCGCTTcctggcctctcagatcctggaactcctctcctccatgatcttctcctgtct--gcctgaatctcatgcccttgttatcccctaggcctcatcatggctaagaaccccagcccttccatactctcaatctcacacttcccactctctgaccatctttccactcatccccttgcaaggtggccacaggctctgaggacacagatactatca-ttttatcatatgctgtgatgtaatatcagtggaccactcattgcatatgtgcttgctttccacgcttggagtctaccctgtagtacatcaattccaacaatcgttccaccctcctgggattcccaatccagtgatcctgccatctactcactgtccctca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6134092 487 +   6154872 gtggacttgcaatccacacaactgtgccatgatacataggtgctgtttaaagccatttggtttgtggtaatttttatg------gcagcaatagaCACCCACACAGCAGAGAAGATGCCCTCGCTTcctgacctctcagatcctggaactcctctcctccatgatcttctcctgtct--gcctgaatctcatgcccttgttaccccctaggcctcatcatggctaagaaccccagcccttccatactctcaatctcacacttcccactctctgaccatctttccactcatcccctTGCAAGGTGGCCACAGGCTCTGAGGACACAGATACTATCA-TTTTATCATATGCTGTGATGTAATATCAGTGGACCACTCATTGCATATGTGCTTGCTTTCCACGCTTGGAGTCTAccctgtagtacatcaattccaacaatcgttccaccctcctgggattcccaatccagtgatcctgccatctactcactgtccctca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74825218 485 + 122973662 ctggacttgcaacccacatgactgtgacatgataattaggtgctgtttaaagccatttggattgtggtaa-ttttatg------gcagcaatagatacccatacaGcagagaagatgccctcactccttggcctctcagatcctggaactcctctcctccatgatcttct-ctctct--gcctgaatctcatgcccttgttatcctctaggcctcatcatggctaagaaccccagtccttccatactgtcaatctcacacttcccactctctgaccgtctttccactgatccccttgcacggaggccacaggctctgaggacactgatactatca-ttttatcatatgttgtgacataatatcagtgaaccactcgtcgcctatgtacctgctttccaggcttggagtccaccctgtagtacatcaattccaacaatccttccaccccactgggattcccagtcaagtgatcctgccatctactccctgtccctca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30471745 487 + 172585720 gtagacttgcagcccacaggactgtggcatgataattaggtgctgtttaaagctgcttggtttgtggtaatttttatg------gcaacaatagacacctatacagcagagaagatgtccatgccccatggcctctcc-atcctggaactcctttccttcataaccatgtcctctctctgcctgaatctcatgcccttcttatccactaggtctcctcatggcaaagaaccccagcccttccatactctcaatttcacacttcccactctctgaccatctttcctctcat-cccttgcagggtagtcacagactctgaggacactgacactatta-ttttatcatatactgtgatgtaatatcagtgaaacactcattgcttatgtgcctgctttccaggcgtggagtcccttgtgtagtatgttgattctaacaatctattcacccccttgagattcctagtcaagtgaccctgccatatactctctctccctca
i rheMac8.chr4             C 0 I 13
s macNem1.NW_012012100v1       74983 488 +   1495729 gtggacttgcagcccacaggactgtgacatgataattaggtgctgtttaaagccgcttggtttgtggtaatttttatg------gcagcaatagacacctatacagcacagaagatgtccatgctccatggcttctcaggtcctggaactcctttccttcataaccgtgtcctctttctgcctgaatctcatgcccttcttatcccctaggcttcttcatggcgaagaagcccagcccttccacactctcaatttcacacttcccactctcccaccatctttccactcat-cccttgcagggtagccacaggctctgaggacactgatactatta-ttttattatatgctgtgatgtaatatcagtgaaacactcattgcttatgtgcctgctttccaggcgtggagtccattctgtagtacatcaattccaacaatccttccacccccttgggattcctagtccagtgatcctgccatatcctccctctccctca
i macNem1.NW_012012100v1   C 0 I 13
s chlSab2.chr17             29182806 494 -  71996105 gtggtcttgcaaccgacacgactgtaacatgataattaggtgctgtttaaagccacttggtttgtggtaatttttatggctatagcagcaatagacacccatacaGCAGAGAAGATGCCCTCTCTccctggcctctcagatcctggaactcctctcttccctgacgttctcctctctctgcctgaatctcgtgcccttgtcatcccctaggcctcatcatgcccaagaaccccaacccttccatgctctcaatctcgcacttccccccgtctggccatcTTTCCATTCAT-CCCATGCAAGGTGGCCACAGGCTCTGAGGACACAGATACTATCATTTTTTTCATATGCTGTGATGTAATATCAGtg-actactcattgcctatgtgcctgcattccaggcttgaagtccgttctgcagtacatcaattcgaacaatccttccaccccactgagattcccaatctagtgatcctgccatctactccctgttactca
i chlSab2.chr17            I 35909 C 0
s colAng1.NW_012115577v1       27100 480 -   1829203 gtggacttgcagcccacaagactatggcatgataattaggtgctgtttaaagctgctaggtttgtggtaatttttatg------gcagcaatagtcacctatacaGCAGAGAAGACGTCCATGCTccctggcctctcagatcctggaactcctttccttcataatcatgtcctctct----ctgaatctcatgcccttcttatcccctaggtttcctcatggcaaagaagcccagcccttccacactctcaatttcacactttccactctct----atctttccactcat-ccttTGCAGGGTAGCCACAGGCTCTGAGGACACTGATACTATTA-TTTTATTATATGCTGTGATGTAATATCGGTGAAACACTCATTGCTTATGTGCCTGCTTTCCAGGTGTGGagtccattctgtagcacatcaattccagcaattcttccacccccttgggattcctaatccagtgatcctgccatatactctctctccctca
i colAng1.NW_012115577v1   C 0 I 13
s cebCap1.NW_016107755v1      455284 483 -   1771730 ttggacttgcatcccacatggttgtgacatgataaacaggtg-tgtttaaagccactgggcttgtattaatttttacg------gcaaaaattgacactcatacagcagagcggatggcctcattccctggcctctcagaacctggaactcctctcttccatgaccttctcctctctctacctgggccccacacccttgtcacctcctcagtcttgtcatagccaatgaccccagcccttccatactctccatctcacacctcccactctctgaccatctttccactcatccccttgcagggcgggcacaggctctgaggacacag-----atca-ttttatcgtatgctgtgatgtaatatcactgaaccacacattgcatatgtgcctgctttcccggcttggtgtccaccctgtagtatatcagctccaacaatccttccaaccccccgggattcccaatctagtgatcctgccatctactcactgtccctca
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macFas5.chr4             141029073   0 + 170955103 I

a score=31899.000000
s hg38.chr6_GL000254v2_alt   1130403 19 +   4827813 ccctgggtgtcctgtcctc
s panTro5.chr6              30083265 19 + 175400573 ccctgggtgtcctgtcctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30313929 19 + 173848474 ccctgggtgtcctgtcctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6134579 19 +   6154872 ccctgggtgtcctgtcctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74825703 19 + 122973662 ctcttggtgtcttctcctc
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             29183300 19 -  71996105 cccttggtgtcctctcctc
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1      455767 19 -   1771730 cccttggtgtcctctcctc
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e colAng1.NW_012115577v1       27580 13 -   1829203 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macNem1.NW_012012100v1       75471 13 +   1495729 I
e macFas5.chr4             141029073  0 + 170955103 I
e rheMac8.chr4              30472232 13 + 172585720 I

a score=451937.000000
s hg38.chr6_GL000254v2_alt   1130422 147 +   4827813 cctcctcacccattttgaattctatggtaaataatttccatccctcccttccctctcccttgaattgtcacactcacctggcaaaactacacagctggtgggttccacctctgcctatgctgagcctgcccccatgagctgca----ggag
s panTro5.chr6              30083284 147 + 175400573 cttcctcacccattttgaattctatggtaaataatttccatccctcccttccctctcccttgagttgtcacactcacctggcaaaactacgcagctggtgggttccacctctgcctatgctgagcctgcccccatgagctgca----ggag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30313948 147 + 173848474 cctcctcacccattttgaattctatggtaaacaatttccatccctcccttccctctcccttgagttgtcacactcacctggcaaaactacacagctggtgggttccacctctgcctatgctgagcctgcccccatgagctgca----ggag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6134598 146 +   6154872 cctcctcacccattttgaattctatggtaaataatttccatccctcccttccctctcccttgagttgtcacactcacctggcaaaattacacacctggtgggttccatctctgcctatgctgagcctg-ccccatgagctgca----ggag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74825722 146 + 122973662 cctcctctctcatttttaactctacagtaaaaaatttcaagccctcccttgcctctcccttgcattgtcatactcacctggcaaaactacacaactggtggattccacctctgcctacactacacctg-ctccatgagcggca----ggag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30472245 141 + 172585720 cctccccactcattttgaagtctgtagtaaataatttccatccctcctttggctctcccttgcat--tcacacttgtttggcaaaactacgcagctggtggattccacctctgcctacactgcacctgcccccatgagctgca--------
i rheMac8.chr4             I 13 C 0
s macNem1.NW_012012100v1       75484 142 +   1495729 cctcctcacccattttggattctgtagtaaataatttccatacttcccttgcctctcccttgcattgtcacacttgcttggcaaaactacatagctggtggattccatcactgcctacactgcacctgccccc-tgagctgca--------
i macNem1.NW_012012100v1   I 13 C 0
s chlSab2.chr17             29183319 146 -  71996105 cctccttacctgttttgaattctatggtaaataatttctatccctcccttgcctctcccttgagttgtcacactcacctggcaaaactacacagttggtggattctacctctgcctacactgcacctgctccc-tgagctgcaggag----
i chlSab2.chr17            C 0 I 42
s colAng1.NW_012115577v1       27593 142 -   1829203 actcctcacccattttggattctgtagtaaataatttccacccttcccttgcttctcccttgcgttgtcacacttgcttggcaaaactacatagctggtggattccacctctgtctacactgcacgtgccccc-tgagctgca--------
i colAng1.NW_012115577v1   I 13 C 0
s cebCap1.NW_016107755v1      455786 146 -   1771730 cctactgacccattttgaattctatggtaaataatttcca-ccctcccttgcctctcccttgcgttgtcacattcacatggtaaaactacacacctggagagttacacctctgtctacactgcacctgcccccatgagctgca----ggag
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macFas5.chr4             141029073   0 + 170955103 I

a score=104471.000000
s hg38.chr6_GL000254v2_alt   1130569 50 +   4827813 gctggagagcagcacacagtacgctgactggtctcttaaaatttaggatt
s panTro5.chr6              30083431 50 + 175400573 gctggagaacagcacacagtacgccgactggtctcttaaaatttaggatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30314095 50 + 173848474 gctggagaacagcacacagtacgccaactggtctcttaaaatttaggatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6134744 50 +   6154872 gctggagagcagcacacagtacaccgaatgatctcttaaaatttaggatt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74825868 50 + 122973662 gctggagagcagcacacagcacactgactggtctctttaaatttaagatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30472386 46 + 172585720 ---ggagagcagcacacagcacaccgactgctctctgtaccttcacgac-
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       75626 46 +   1495729 ---ggagagcagcacacagcacactgactgttctctgtaccttcacgac-
i macNem1.NW_012012100v1   C 0 C 0
s colAng1.NW_012115577v1       27735 46 -   1829203 ---ggagagcagcacacagcaatctgactgctctctgtaccttcatgac-
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1      455932 50 -   1771730 gctggagagcaccacacggcatgctgactgacctctttaaatttaggatt
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e chlSab2.chr17             29183465 42 -  71996105 I
e macFas5.chr4             141029073  0 + 170955103 I

a score=907050.000000
s hg38.chr6_GL000254v2_alt   1130619 262 +   4827813 ccaaaccacataggaagtccctacca------tggccagcaa--------------------tcaccctctccctgcatggctcaccctcagcctcctcctggcctgggtgactcttacacaccttttctttgtgctcacacatccaacctgccttccccattcttacttcagctgatgaccttgcttcccacttcactgagaaaactgaacacattagaagacaacttcacagattccaccactgtctgctcatgcatttgcagctgcaccacatgtcaggcgtttt
s panTro5.chr6              30083481 262 + 175400573 ccaaaccacatgggaagtccctacca------tggccagcaa--------------------tcaccctctccctgcatgactcaccctcagcctcctcctggcccgggtgactcttacacaccttttctttgtgctcacacatccaacctgccttccccattcttacttcagctgatgaccttgcttcccacttcactgagaaaactgaacacattagaagagaacttcacagattccaccactgtctgctcatgcatttgcagctgcaccatatgtcaggcgtttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30314145 262 + 173848474 ccaaaccacatgggaagtccctacca------tggccagcaa--------------------tcaccctctccctgcatggctcgccctcagcctcctcctggcccgggtgactcttacacaccttttctttgtgctcacacatccaacctgccttccccattcttacttcagctgatgaccttgcttcccacttcactgagaaaactgaacacattagaagagaacttcacagattccaccactgtctgctcatgcatttgcagctgcaccacatgtcaggcgtttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6134794 262 +   6154872 ccaaaccacatgggaagtccctacca------tggccagcaa--------------------tcaccctctccctgcatggctcaccctcagcctcctcctggtccgggtgactcttacacaccttttctttgtgctcacacatccaacctgccttccccattcttacttcagctgatgaccttgcttcccacttcactgagaaaactgaacacattagaagacaacttcacagattccaccactgtctgctcatgcatttgcagctgcaccacatatcaggcatttt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74825918 264 + 122973662 ccaaacctcatggggagcccctagcattgatgtgggcagcaa--------------------tcaccctctccaggcatggttcagcctcagcctcctctt----caggagactcttacacagcttctctttgtgatcacacatccaaaccttattcctcattcttacttcagccgatgaccttgcttcctacttcactgagaaaactgaacacattagaagacaacttcacagattccaccaccatctgctcatgcatttgcaactgcactgcatgtcagacgtttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30472432 282 + 172585720 ccaaacctcatggggagcccccacca------cggccagcaatcaccctctccctgcatggctcaccctctccctgcatggctcaccctcagccccctctgggtctgggtgactcttacacaccttctctctgtgctcacacatccaaccctccttccccattcttacttcagctgatgaccttgcttcctacttcactgacaaaactgaacatattagaagacagcttcacagattccaccactgtctgttcatgcatttgcagctgcatcgcatgtcaggaatttt
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       75672 262 +   1495729 ccaaacctcatggggaacccccacca------tggccagcaa--------------------tcaccctctccctccatgactcaccctcagccagctccgggcctgggtgactcttacacaccttctctctgtgctcacatatccaaccctccttctccattcttactttagctgatgaccttgcttcctacttcactgacaaaactgaatacattagaagacaacttcccagattccaccactgtttactcatgcatttgcagctgcaccacatGGCAGGCATTTT
i macNem1.NW_012012100v1   C 0 M 6710
s chlSab2.chr17             29183507 262 -  71996105 ccagacctcatggggagcccccacca------cggccagcaa--------------------tcaccctctccctgcatggcttaccctcagcctcctccgggcctgggtgacttgtacacaccttctctgtgtgctcacatatccaattctccttccccattcttacatcggctgatgaccttggttcctacctcactgagaaaactgaacacattagaagacagcttcccagattccaccactgtctgctcatgcatttgcggctgcatcacatgccaggcatttt
i chlSab2.chr17            I 42 C 0
s colAng1.NW_012115577v1       27781 262 -   1829203 ccaaatctcatgggaagcccccacca------tggccagcaa--------------------tcaccctctccctgcatggctcaccctcagccacctccgggcctgggtgactcttacacaccttctccctgtgctcacatatccaaccctccttttccattctttcttcagctgatgaccttgcttcctacttcactgagaaaactgaacacattagaagacaatttcacagattccaccaccgtctgctcatgcatttgcagctccaccgcatggcaggcatttt
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1      455982 262 -   1771730 caaaacctcatggagaaatcccacca------tggccagcag--------------------tcaccctgtcccttcatggctcaccctcagccccctcctgtcctgggtgactcttacacaccttctctttgtgctcacacatccaacctttcctctccgttcttaactcagatgaggacattgcttcctacttcactaacataactgaacccaggagaaaacagcttcacagattccaccactgtctgatcatgcatttgcagctgcactgcatgtcaggcacttt
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macFas5.chr4             141029073   0 + 170955103 I

a score=1707126.000000
s hg38.chr6_GL000254v2_alt   1130881 670 +   4827813 accatgtgagggactgttgtgggttaacccttctgctcccagccagagccagaccctcttctggtgccccaattgccatcccttatcatctacttaaaggtgtcagttcatcaattaata--cc----atttttatctttatcgtcaacctttttcctctctccccactggatcattgtggcagtcatgagaatgcacatcccagcccctcatctagaagaagcagaattgatgatggccccagctcttgaagtctgaaatctattgccacatttgctctgagactatgcccacccctggctttttccagccaatgattgaggaaagtagggcagaaactaaggcagg-acattcctcttctgaaggctgactgaagctccagggctccctgccacccttactgaacttcccttagcctgcacagggtctaggatgcttccagctgaccttcctgcactctctacatcactgaggctcagagttgctttgtggtccagtggctttcccagcattt----tctg----tctcatgaatttctctcacaagta-tttcccctaataaatccttacatgtttactactgtattggggtccgcttctcaggggaccctaactaacacaAGtggcatgaagggtgatcc------------------atgaaaacaggcaaaaatgggaatttgaaataagctt-cccac
s panTro5.chr6              30083743 671 + 175400573 accatgtgagggactgttgtgggttaaccattctgctcccagccagagccagaccctcttctggtgccccaattgccatcccttatcatctacttaaaggtgtcagttcatcaattaatat-ct----ttttttatctttatcatcaaactttttcctctctccccactggatcattgtggcagtcatgagaatgcacattccagcccctcatctagaggaagcagaattgatgatggccccagctcttgaagtctgaaatctattgccacatttgctctgagactatgcccacccctggctttttccagccaatgattgaggaaagtagggcagaaactaaggcagg-acatttctcttctgaaggctgactgaagctccagggctccctgccacccttactgaacttcccttagcctgcacagggtctaggatgcttccagctgaccttcctgcactctgtacatcactgaggctcagagttgctttgtggtccagtggctttcccagcattt----tcta----tctcatgaatttctctcacaagta-tttcccctaataaatccttacatgtttactactgtattggggtctgcttctcaggggaccctaactaacacaAGTGACATGaagggtgaccc------------------aagaaaacagtcaaaaatgggaatttgaaataagctt-cccac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30314407 671 + 173848474 accatgtgagggactgttgtgggttaaccattctgctcccagccagagccagaccctcttctggtgccccaattgccatcccttatcatctacttaaaggtgtcagttcatcaattaatat-ct----ttttttatctttatcatcaaactttttcctctctccccactggatcattgtggcagtcatgagaatgcacattccagcccctcatctagaggaagcagaattgatgatggccccagctcttgaagtctgaaatctattgccacatttgctctaagactatgcccacccctggctttttccagccaatgattgaggaaagtagggcagaaactaaggcagg-acatttctcttctgaaggctgactgaagctccagggctccctgccacccttactgaacttcccttagcctgcacagggtctaggatgcttccagctgaccttcctgcactctgtacatcactgaggctcagagttgctttgtggtccagtggctttcccagcattt----tcta----tctcatgaatttctctcacaagta-tttcccctaataaatccttacatgtttactactgtattggggtctgcttctcaggggaccctaactaacacaAGTGACATGaagggtgaccc------------------atgaaaacagtcaaaaatgggaatttgaaataagctt-cccac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6135056 669 +   6154872 gccatgtgagggactgttgagggttaaccattctgctcccagccagagccagaccctcttctggtgccccaattgccatcccttatcatctacttaaaggtgtcagttcatcaattaata---c----ctttttatctttatcatcaacctttttcctctctccccactggatcattgtggcagtcatgagaatgcacatcccagcccctcatctagaggaagcagaattgatgatggccccagctcttgaagtctgaaatctattgccacatttgctctgggactatgcccacccctggctttttccagccaatgattgaggaaagtagggcagaaactaaggcagg-acatttctcttctgaaggctgactgaagctccagggctccctgccactcttactgaacttcccttagcctgcacagggtctaggatgcttccagctaaccttcctgcactctgtacatcactgaggctcagagttgctttgtggtccagtggctttcccagcattt----tcta----tctcatgaatttctctcacaagta-tttcccctaataaatccttacatgtttactactgtattggggtctgcttctcaggggaccctaactaacacaAGTGACATGAAgggtgatcc------------------atgaaaacaggcaaaaatgggaatttgaaataagctt-cccac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74826182 677 + 122973662 accacatgagggactgttgtgggttaatcattctgctcccagccagagccagtccttcttctggtgccccaaatgtcaacccttatcatctagttaaaggtgtcagttcatcaattagtgtacc----ttttttctttttatcatcaacctttttcctctctccccactggatcattgtggcagtcatgagaatgcacatcccagcccctcagctagaggaagcagaactgatgatggccccagctcttgaagcctgaaatctattgccacatttgctctgagaccatacctgcccctgatcttttccagccaatg-ttgaggaaagcagggcagaaactaaggcaggaacatttcttctctgaaggctgactgaagtgccaggactccctgtctcccttactgaacttcccttagcctgcacagggtctaagatgcttccagctgaccttcctgcactctctccttcactagggctcagagttgcagtgtggtctgatggctttcccagtgttt----tctgtctctctcctgaatttctctcacaagta-tttcccctaataaatccttgcacgcttaatactgtattggggtctgctcctcaggggaccataactaacacaAGTGGTATGAAGGGTGACCC------------------ATGAAAACAGGCAAAAATGGGAATTTGAAATAATCTTGCCCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30472714 657 + 172585720 tccacatgggagattgctgggtattaaccatcctgctcccagacagagccagttcctctgctggcgccctgaacatcatcccttctcatctacttaaaggtgttagttcatcaattaata--cc----ttttttccctctatcctcatcccttttcctcttactccagtgcatcattgtggcagtcatgaggatgcacatcccaggccctcaggtagacgaagaataattgatgat-gcctctgctgtcacagcctgaaatctattgtcacttttgctccgagaccacacctgactca-gctttttcc------tggttgaggaaagcagg---gaaactgaggcaggaatatttctattctgaaggctgactgaggctccagggctccctgctacttttaccgaacttaccttagcccgcacagggtctagaaggcttccagctgaccttcctgccctctctccttcactggggctcagagttgcagtgtggtctgatggctttcccagtgttttcggtctc----tctcctgaatttctctcacaagta-tttcctttaataagtccttgcacgtttaatactgtattggagtctgctcctcaggagaccataactaacac-aGTGGTATCAAGGGTGAT-------------------------AATGGgcaaaaataggaaattgaaataagctttcccac
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29183769 675 -  71996105 accacgtgggggactgttgtgggttaaccatcctgctcccagaaagagccagtccctcttctggtgccccaaaagtcatcccttctcatccacttaaaggtgtcagttcatccattaata--cc-tttttttttctctttatcatcaacctttttcctctctccccactggatcaCtgtggcagtcatgagaatgcacatcccagcccctcagctagaggaagcagaattggcgatggccccaacttttgaatcctgaaacctattgccacatttgctctgagaccacacctgccccctgtcttttccagtcaatgattgaggaaagcaggccagaaactaaggcagaaacatttcttctctgaaggctgcccgaagctccagagctccctgccaccctcactgaacttcccttagcctgcacggggtctaggatgcttccaactgatcttcctgaactctctacgtcactggggctcagagttgctttgtggtctgatggctttcccaacattt----tctc----tctcatgaatttctctcacaagta-tttgccctaataaaaccttacacgtttaccactgtattggggtctgctcctcaggggaccctaactaacacaAGTGGCATGAAGGGTGATCC------------------ATGAAAACAGGCAAAAATGAAAATCTGAAATAAGCTTTCCCAC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1       28043 673 -   1829203 tccacatggcagactgttgggtgttaaccatcctgctcccaaccagagtcagttcatctgtgggtgtgctgaacatcatctcttctcatctacttaaaggtgttagttcatcaagtaata--cc---ttttattccgtctatcatcatccctttttctctTATTCCAGTGTTTCATtgtggcagtcatgaggatgcacatcccaggccctcaggtagaggaagaataattgatgat-gttctagctgtcgcagtctgaaatctattgtcacgttt-----------acacctgccttg-gctttttcc------tgactgaggaaagcagg---gaaactaaggcaggaatatttctactctgaaggctgactgaggctccagggctccctgccacacttaccgaattttccttaggcagcacagggtctagggtgcttccagccaaccttcctgcgctctctccttcactggggcccagaattacattgtggtctgatggctttcccagtgttttctgtctc----tatcctgaatttctctcacaagca-tttcccttaataagtccttgcacgtttaacactgtattggggtctgctcctcaggagaccatagctaacacaAGTGGTATCAAGGGTGATACCACAAAGAGGTATCAAGGGTGAAAATGGgcaaaaatgggaatttgaaataagctttccaac
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1      456244 669 -   1771730 attatgtgggagactgttgtgggtgaaccattctgtcctcagcctgagccagtccctcttctggtgccccaaatgtcatctcttctcatctacttaaaggtatcagttcaacaattaata--ccattttttcctctctttctcatcaccctttttcctctctccccactggatcatCgtggcagtcatgagaatgcacatcccagcccctcagctagaggaagcataactggtgacggccccagctcttgaagcctgaaatctattgccacatttgctctgagaccgcacctgcccctggtcttttccagccaatgattgaggaaagcagggcagaaactaaggcaggaacacttctcctctcagggctgactgaagctccagggctccct-ccacccttactgaacttcccgtagccagcacagggtctagggtgcttccagctgaccttcctgccctctctccttcactggggctcagagtggcgttgtgg-----------tccctgcattttctgtctc----tttcctgaatttctcttacatgtattttcccctagtaaatccttgcaagtttaatactgtattggggtctattcctcaggggaccccaactaacacaAGtggtatgaagggtgatcc------------------atgaaaacagacaaaaatgggaattagaaataagctcgcccac
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             42948 20172 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macNem1.NW_012012100v1       75934 6710 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=2373312.000000
s hg38.chr6_GL000254v2_alt   1131551 746 +   4827813 tgcctggcaggccaagaggatgccacccgggttggt-ggcagacacagaaagtccatggcacaaggtgcagctgagcagctgggggtctcaccagtgctgagctgagaagttgccttggttagggagtgctatggcacatgcagtgatagaatgccctgcataataaggacagggttgg-a-aga-aacctacaaagacagtggctttggctagttacttctcagctgcatcgatgctgtgtaaaaagataatgagaatctgcggattgttgacagctatgactggctacatttgacaccctcggcagtgtctcatggacaggtctttatctcctgtagcaaaagggcagatagcaaggaatgttagctct--acatcactatgagggccacagtgctccagagatgtttgacactcagccaaggcaggcctgttacaggaaagtcagggctttggtggggaaacctgagattctgcaaactggaacaggATTATGCGATGCGTGCCCTCCAGGATCTTCTGGGCATGCAGAGGAGGCTCACCCTTCTCTAGTAATGGTTCCCACTTTCACTGCTGGAAGATGCTACACAATCCTCACCCCTATGATGCCGCGGGAATCCCACTCaggaggtttgcaggaactagccagcacgtccccataggagcccagggactacttctgggattggaatttgagggtgtttgatcaaggaaccagaatttcaggctggatgaat-ataatcctttggctt
s panTro5.chr6              30084414 746 + 175400573 tgcctggcaggccaagaggatgcaacccgggttggt-ggcagacacagaaagtccatggcacaaggtgcagctgagcagctgggggtctcaccagtgctgagctgagaagttgccttggttagggagtgctatggcagatgcagtgatagaatgccctgcataataaggacagggttgg-a-aga-aacctacaaagacagtggctttggctggttactgctcggctgcatcgatgctgtgtaaaaggataatgagaatctgcggattgttgacagctatgactggctacatttgacaccctcggcagtgtctcatggacaggtctttatctcctgtagcaaaagggcagatagcaaggaatggtagctca--acatcattatgagggccacagtgctccagagatgtttgacactcagccaaggcaggcctgttacaggaaagtcagggctttggtggggaaacctgagattctgcagactggaacaggattatgcgatgggtgccctccaggatcttCTGGGCATGCAGAGGAGGCTCACCTTTCTCTAGTAATGGTTCCCACTTTCAATGCTGGAAGATGCTACACAATCCTCACCCCTATGATGCCGCGGGAATCCCACTCaggaggtttgcaggaactagccagcacgtccccataggagcccagggaccacttctgggattggaatttgagggtgtttgatcaaggaaccagaatttcaggctggatgaat-ataatcctttggctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30315078 746 + 173848474 tgcctggcaggccaagaggatgcaacccgggttggt-ggcagacacagaaagtccatggcacaaggtgcagctgagcagctgggggtctcaccagtgctgagctgagaagttgccttggttagggagtgctatggcagatgcagtgatagaatgccctgcataataaggacagggttgg-a-aga-aacctacaaagacagtggctttggctggttactgctcggctgcatcgatgctgtgtaaaaggataatgagaatctgcggattgttgacagctatgactggctacatttgacaccctcggcagtgtctcatggacaggtctttatctcctgtagcaaaagggcagatagcaaggaatggtagctca--acatcattatgagggccacagtgctccagagatgtttgacactcagccaaggcaggcctgttacaggaaagtcagggctttggtggggaaacctgagattctgcagactggaacaggattatgcgatgggtgccctccaggatcttCTGGGCATGCAGAGGAGGCTCACCTTTCTCTAGTAATGGTTCCCACTTTCAATGCTGGAAGATGCTACACAATCCTCACCCCTATGATGCCGCGGGAATCCCACTCaggaggtttgcaggaactagccagcacgtccccataggagcccagggaccacttctgggattggaatttgagggtgtttgatcaaggaaccagaatttcaggctggatgaat-ataatcctttggctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6135725 743 +   6154872 tgcctggaaggccaa-aggatgccacccgggttggt-ggcagacacagaaagtccatggcacaaggtgcagctgagcagctggggatctcaccagtgctgagctgagaagttgccttggttagggagtgctatggcagatgcagtgatagaatgccctgcataataaggacagggttgg-a-aga-aacctacaaagacagtggctttggctggttactgctcggctgcatcgatgctgtgtaaaaggataatgagaatctgcggattgttgacagctatgactggctacatttgataccctcggcagtgtctcatggacaggtctttatctcctgtagcaaaagggcagataccaaggaatggtagctca--acatcattatgagggccacagtgctccagagatgtttgacactcagccaaggca-gcctgttacaggaaagtcagggctttggtggggaaacctgagaTTCTGCAGACTGGAACAGGATTATGCGATGGGTGCCCTCCAGGATCTTCTGGGCATGCAGAGGAGGCTCACCTTTCTCTAGTAATGGTTCCCACTTTCAATGCTGGAAGATGCTACACAATCCTCACCCCTATGATGCCGCGGGAATCCCACTCaggaggtttgcaggaactagccagca-gtccccataggagcccagggaccacttctgggattggaatttgagggtgtttgatcaaggaaccagaatttcaggctggatgaat-ataatcctttggctt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74826859 750 + 122973662 TGCCTGGCAGGCCAAGCGGATGCCACCCGGGTTGGT-GGGGGACACAGAAAGTCCATGGAacaaggtgcagctgagctgctgtgggtctcaccagtgctgagatgagaagatgccctgcttaggggatgctatggcaggtgcagtgatagaatgccctccacaataatgacgggattgg-aggga-aacttacaaagacagtggagttggctggttactgctcggctgtgttgatgccctataaaacgatcatgagaatctgcggattgttaacagttgtcactggctatatgtgacagcctctgcattgtctcatggagaggactttatctccagcagcgaaagggcagatagcatggaatggtagctgaagacatcactacgagggccacagtgctccagagatgtctgacactcagccaaagcaggcctgttacgggaacgtcagggtcctggtggggaaacctgagattctggaaactggaacagggttatccgatgggtgcccTCCAGGACCCTCTGGGAATGCAGAGGAGGCTCGCCATTTCCTAGTAATGGTTCCTACTTCCTATGCTGGAATATGCTGCAAAAGCCTCACCCCTATGATTCTGCGGGAATCCCACTCaggaggttagcaggaattagctgccatttccccataggagcccgaggagcacttctgggattgcaatttgagggtgtttgatcaagaaaccagtattttaggctggatgaataaaaaccctttggctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30473371 744 + 172585720 tgcctggtagaccaagaggatgccatctgggttagtcgggggacacag----tctgtagcacaaggtgcagctgaggtgctgtgggtctcaccagtgctaacctgagaagacgtcctgattaaaagcagctatggcaggtgggatgatacaataccctgcacaataatgatggaattgg-g-ggg-aacccacaaagacagtgga-ttggctggttacttcccagctgtgttcatgctctataaaatgataatgagaatctgtagattgttcacagatgtcactggctacgtgtcagagcctctgcagtgtctcatggagaagcctttatctcctgtagcaaaaggatagataccacggaatagtagctgaagacatcattatgagggccacagtgctccagagatgtttgacacccagccaatgcaggcccgttataagaaagtcagggccatggtggggaaacctgagattctgcaaactggaacaagatcatccgatgggtgccGCCC-GGATCCTCTGGGCATGCAGAGGAGGCTCACCCGTCTCTAGCAATGGTTCCCACTTCCTATGCTGGAAGATGCTGCAGAAGCCTCATCCCTATGACACATTGGGAATCCCACTCaggagctttgcaggaaccagctggcgggtcccaataggagcacggggagcacttctgggactgaaatttgagggtgtgtgatgaaggggtcagaatgtcaggctggattaatgtaaatccattggctt
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29184444 748 -  71996105 TGCCTGGCAAGCCAAGAGGATGCCACCCGGGTTGGT-GGGggacacagaaactccatggcacaaggtgcagctgagctgctgtgggtctcaccagtgctgagctgagaagatgccttcgttacagggtgctatggcaggtgtggtgatagaatgccctgtacaataaggatggggttgg-g-gga-aacctacaaagacaggggagttggctggttactgctcggctgcattgttgccctatgaaaggatcatgagaatctgtggaatgttaacagctgtcactggctacatgtgacagcctctgcagtatctcatggagaggtctttatctcctgtaacaaaagggcagatagcatggaatggtagctgaagacatcattatgagggctacagtgctccagagatgtttgacactcagccaaggcaggcctgttacaggaaagtcagggcc-cggtggggaaacctgagattctgcaaactggaataggattatgcgatgggtgctgtctaggatctttggggcatgcagaggaagctcacccttttctagtaatggttcccacttcttatgctggaagatgctacagaagcctcatccctatgatgccatgggaatcccACTTaggagctttgcaggaactagctagctcgtccccatagggggctggggaccacttctgggattggaatttgagggcctttgattaaggaaccagaatttcagtctggatgaataaaaatcatttggctt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1       28716 737 -   1829203 tgtcttgcaggccaagaggatgccatctgggttagt-gggggacacagacagtc-gtggcacaaggtgcagctgagctgctgtgagtgtcaccagtgctaacctgagacaatgtcctggttaaaagaagctatggcaggtgtggtgattgaatgccctgaacaatagtgatggaactgg-g-gggaaacctacaaagacagtggagatgactggttacttcccagctgtgttgatgccctataaaaggataatgagaatctgcagat----------tgtcactggctacgtgtgagagcctctgcagtgtctcacggagaagcctttatctcctgcagtgaaaggatagataccatggaatggtagctgaagacatcattatgagggccacagtgctccagagatctttgacactcagccagcgcaggcctgttataagaaagtcagggccacggt-gggaaacctgagattctgcaaactggaacaagatcatctgatgggtgctgccc-GGATCCTCTGGCCATAGAGAGGAGGCTCACCCTTCTCTGGTAATGGTTCCCACTTCCTATGCTGGAAGATGCTGCAGAAGCCTCATCCCTATGATGCATTGGGAATCCCACTCAGGTGCTTtgcgggaaccagccggcatgttccagtaagagcagggggagcacttctgggattgaaatttgagggtgtgtgatcaaggggtcagaatatcagtctggatgaatgaaaatcctttggctt
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             63120 745 +    515838 TGTCTGCCAGGCCAACAGGATGCCACATGGGTTGGT-GGGGGACACAGAAAGTCCACAGCacagggtgcagctgagctgttgtgggtctccccagtgctgagctgagaagatgccctggttaggggaatccatggcaggtgcggtgatagaatgccctgcacagtaatgatggggtaggaa-gga-aacctacaaagacagtggagttggctggttactgctcggctgtgctgatgccctataaaaggatcatgaaaaccccaggattgttaagaaccatcactggctacatgtgacaacctttgcagtgtctcatggagaggcttttatctcctgtagagaa-----agatagtgtgacattgtagttgaaaacatcattacgagggccacagtgctccagagatgtttgacactcagccaaggcaggcctgttacaggaaagtcagggccctggtggggaaacctgagaTTCTGCAAACTGGAACAGGGTTATCCAATGGGTGTCCTCCAGGACCCTCTGGGCATGCAGAGGAAGCCCACCCTTCTCTAGTAATGGTTCCCACTTCCTATGCTGGAAGATGCTGCAGAAGCCTCACTCCTAGGATGCAGCGGGAATCCCACTCaggagttttgcaggaagtagccggcacgaccccataggagccagaggagcacttcagggattggaatttgaggtcacttgatcaaggaaccagaatTTCTGCCTGGATGAATAAAAATCCTTTGGCTT
i saiBol1.JH378341         I 20172 I 1337
s cebCap1.NW_016107755v1      456913 746 -   1771730 tgccaggcaggccaagaggatgccacccaggttggt-gggggacatagaaagttcatggcacaaggtGCGGCTGAGCTGCAGTGGGCCTCCCCAATACTGAGCTGAGAAGATGCCCTGGTTAGGGGAAGCTACGGCAGGTGCAGTGATAGAAT-TCCTGCACAATAAtgaaggggttgg-g-gaa-aacctacaaaaacagtagagatggctggttactgctcggctgtgctgatgtcctataaaaggatcatgagaacccacggattcttaacagccatcatgggttacatgtgacagcctctgcagtgtctcatggagaggcctttttctcctgcactgaaagggcagatagcatggaattatagttgaagacatcattttgaggaccacagtgctccagagatgtttgacactcagccaagtcaggcctgttacaggaaagtcaggaccctggtagggaaacctgagaTTCCACAAACTGGAACAGGGTTTTCCGATAGGTGCCCTCCAGGATGCTCTGGGCATGCAGAGGAGGCTAGCGCTTCTCTAGTCATGGTTCCCAC-TCCTGTGCTGGAAGACGCTGCAGAAGCCTCACCCCTAGGATGCAGCGGGAATCCCACTCaggagctttgtaggaactc-ccggcacttccctgtaggagcccgaggagcatttctgggattgaaatttgagcatatttgtttaaggaaccataatttcaggctggatgaacaagaatcctttggatt
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macNem1.NW_012012100v1       75934 6710 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=732817.000000
s hg38.chr6_GL000254v2_alt   1132297 285 +   4827813 gaagacactttctcagggcatggatttatcaaacactccaggactttgataagt-ggagtaaacccactgctggggtgtatccacatagtctagaaaaaaacatgcccaactctcaacaaggtagacatgtcttagttgccctggaacatgtagaggatggaataa-caagctgaggggagtgggcttggtgaaggcctaccaaaaccatgctctacaagagggcccagaggacacaccttccaccagagcctcaggaacttgatggtgagagggacctgcatcact
s panTro5.chr6              30085160 285 + 175400573 gaagacactttctcagggcatgggtttatcaaacactccaggactttgataaat-ggagtaaacccactgctggggggtattcacatagtctagaaaaaaacatgcccaactctcaacaaggtagacatgtcttagttgccctggaacatgtagaggatggaataa-caagctgaggggagtgtgcttggtgaaggcctaccaaaaccatgctccacaagagggcccagaggacacgccttccaccagagcctcaggaacttgatggtgagagggacctgcatcact
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30315824 285 + 173848474 gaagacactttctcagggcatgagtttatcaaacactccaggactttgataagt-ggagtaaacccactgctggggtgtatccacatagtctagaaaaaaacatgcccaactctcaacaaggtagacatgtcttagttgccctggaacatgtagaggatggaataa-caagctgaggggagtgtgcttggtgaaggcctaccaaaaccatgctccacaagagggcccagaggacacgccttccaccagagcctcaggaacttgatggtgagagggacctgcatcact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6136468 282 +   6154872 gaagacactttctcagggcatgggtttatcaaacactccaggactttgataagt-ggagtaaacccactgctggggtgtatccacatagtctag-aaaaaacatgcccaactctcaacaaggtagacatgtcttagttgccctggaacatgtagaggatgg-ataa-caagctgaggggagtgtgcttggtgaa-gcctaccaaaaccatgctccacaagagggcccagaggacacgccttccaccagagcctcaggaacttgatggtgagagggacctgcatcact
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74827609 287 + 122973662 ggaggcactttctcaaggcatgggtttatcaaatatcccaggactttgataagtgggggtaaacccactgctggggtgaatccatatagactagaaaaaatgatgcccaactctcaacaaggtagacatgtcttagtttccctggaacatgtagaggatggaataaggaggctgagggaagtgggcgtgGTGAAGGCCCACCAGGACCATGCTCCACAAGAGGGCCCAGAAGGCACACCTTCCACCAGAGCCTCAGGAACTTGATGGTGAGAGGGACCTGCATCACT
i nomLeu3.chr1a            C 0 T 51683
s rheMac8.chr4              30474115 278 + 172585720 ggaggcactatctcagggcatgggtttatcagacaccccagaactttgataagtgggggtaaacccactgctggggtgaatctagataaact---------gattcccagatctcaacaaggtagacatgtcttagttgccctagaacatgcagaggatggaataacgaggctgagtgaattgggcatggtgaaggcccactaagaccatgctccacaagaggatccagacgccacaccttccaccagagcctcaggaacgtgatggcgagagggagctgcatcact
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29185192 287 -  71996105 ggaggcactttctcagggcacgggtttatcaaacaccccaggactttgacaaatggaggttattccactgctggggtgaatccatataaactggaaaaaaagatgcccaactctcaacaaggtagacatgtcttagttgctctggaacatgtagatgatggaataacgaggctgaggaaagtgggcatggggaaggcccaccaggactatgctctacaagagggcccagaggacacactttccaccagagcctcaggaacatgatggtgagagggacctgcatcatt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1       29453 278 -   1829203 ggaggcactttctcagggcatgggtttatcaaacaccccagaactttgataagtggggttaaacccactgctggggtgaatctagataaaat---------gattcctaaatctcaacaaggtagacatgtctttgttgccctagaacatgtagaggatggaataacgaggctgagtgaattgggcatggtgaatgccccccaagatcatgctccacaagaggatgcagatggcacaccttccaccagagtctcaggaacgagatggtgagagggacctgcatcact
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1      457659 286 -   1771730 agaggtgctttcacagagtgtgggtttatccagcaccccaggactttgataaatgggggtaaatctactgtccaggtgaatccatacagactaa-aaaaataatgctcaactctcaagaaggtagacaaatcttagttgccctttaccatatagaagatggaataaagaggctgagggaactgggtgtggtgaaagtgcaccaggaccatactctacaggagggcacagagggcacaccttttgccagagcctcaggaacatgctggtgagagggacctgcatcact
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             63865 1337 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macNem1.NW_012012100v1       75934 6710 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=2330986.000000
s hg38.chr6_GL000254v2_alt   1132582 1087 +   4827813 aagaagtgtcagggtattgtcctttgtaggctgggggtgatggtagtaaagatagtcccagagtttcattt-ctaatatcactggggagagtgtggccctgaagagacaaagaccaagtggtggcagtgacttgcaaaagccagagggcacggttactatggcaacctcggaggagaagccaagaggactcaagctgcagggaatgtggggaagtataatagagggtggtgtcccagggttaggacaggcag------------ctggttgatatctatgataagaaagcaagaattgagaagcaggagggtgaaggtgtttgactcaatacaaaatcatgatcccatcctcaatgcctagacctcagccaagatgcagattcagatctcagtgaca---gaggaagagtccatatctctaggcggaatactctgcaaccccgtggaagtatatgct---------------------------------------gggacaattccctcagt-ccttcggcaaaggaccatatagccatttactcaggagattgtacactgggg-aaaggaaacaggcagaactggggggattattgacactgggtgtgaactgacattgatgctcagatgcccacagcactatc-atgtctctcatcacagtggggcttatggagctcagggagtaaacctggacacattatggcccacaatggaactactggatccatagacccagccctggttatcttcctataccctgagtgcacaattgacactgatgcactgctaagtggagttacccccaccctgggtccctagtctgtggagtaaggactttcattgtgctgaaagccaaagggaaacctctgacactgcccccatcctggccaaatcaaaaatcatagtgtgtcccagggtggg---tcttgtgtaagatacttcaagtattg--tggggatcacatcaccattacagagctgaaggatgtgggatggtgttggggctgtctattgtctctacgtaatccagcaacctgtccctgaagaagcctgatgaagcctaaagaatgaactagattactccaggtctggccaagtaggagttataattgcagcttttgtgctgtctggatatcactggtagagca
s panTro5.chr6              30085445 1087 + 175400573 aagaagtgtcggggtattgtcctttgtaggctgggggtgatggtagtaaagatagtcccagagtttcattt-ctaatatcattggggagagtgtggccctgaagagacaaagaccaaggggtggcagtgacttgcaaaagccagagggcacggttactatggcaacctcagaggagaagccaagaggactcaagctgcagggaatgtggggaaggataatagagggtggtgtcccagggttaggacaggcag------------ctggttgatatctatgataagaaagcaagaattgagaagcagaagggtgaaggtgtttgacccaatacaaaatcatgatcccatcctcaatgcctagacctcagccaagatgcagattcagatctcagtgaca---gaggaggagtccatatctctaggcgaaataccctgcaaccccgtggaagtatatgct---------------------------------------gggacaattccctcagt-ccttcggcaaaggaacatatagccatttacgcaggagattgtacactgggg-aaaggaaacaggcagaactggggggattattgacactgggtgtgaactgacattgatgctcagatgcccacagcactatc-atgtctcccatcacagtggggcttacggaggtcagggagtaaacctggacacattatgacccacaatggaactactggatccatagacccagccctggttatcttcctataccctgagtgcataattgacactgatgcactgctaagtggagtcactcccacactgggtccctagtctgtggagtaaggactttcattgtgctgaaagccaaagggaaacctctgacactgcccccatcctggccaaatcaaaaatcatagtgggtcccagggtggg---tcttgtggaagacacttcaagtattg--tgggggtcacatcaccattacagagctgaaggatgtgggatggtgttggggctgtctattgtctctacgtaatccaccagcctgtccctgaagaagcctgatgaagcctaaagaatgaactagattactccaggtctggccaagtaggagttataattgcagcttttgtgctgtctggatatcactggtagagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30316109 1087 + 173848474 aagaagtgtcggggtattgtcctttgtaggctgggggtgatggtagtaaagatagtcccagagtttcattt-ctaatatcactggggagagtgtggccctgaagagacaaagaccaagtggtggcagtgacttgcaaaagccaaagggcacggttactatggcaacctcagaggagaagccaagaggactcaagctgcagggaatgtggggaaggataatagagggtggtgtcccagggttaggacaggcag------------ctggttgatatctatgataagaaagcaggaattgagaagcagaagggtgaaggtgtttgacccaatacaaaatcatgatcccatcctcaatgcctagacctcagccaagatacagattcagatctcagtgaca---gaggaggagtccatatctctaggcggaataccctgcaaccccgtggaagtatatgct---------------------------------------gggacaattccctcagt-ccttcggcaaaggaacatatagccatttacgcaggagattgtacactgggg-aaaggaaacaggcagaactggggggattattgacactgggtgtgaactgacattgatgctcagatgcccacagcactatc-atgtctcccatcacagtggggcttacggaggtcagggagtaaacctggacacattatgacccacaatgggactactggatccatagacccagccctggttatcttcctataccctgagtgcataattgacactgatgcactgctaagtggagtcactcccacactgggtccctagtctgtggagtaaggactttcattgtgctgaaagccaaagggaaacctctgacactgcccccatcctggccaaatcaaaaatcatagtgggtcccagggtggg---tcttgtggaagacacttcaagtattg--tgggggtcacatcaccattacagagctgaaggatgtgggatggtgttggggctgtctattgtctctacgtaatccaccagcctgtccctgaagaagcctgatgaagcctaaagaatgaactagattactccaggtctggccaagtaggagttataattgcagcttttgtgctgtctggatatcactggtagagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6136750 1124 +   6154872 aagaagtgtcggggtattgtcctttgtaggctgggggtgatggtagtaaagatagtcccagagtttcattt-ctaatatcactggggagagtgtggccctgaagagacaaagaccaagtggtggcagtgacttgcaaaagccagagggcacggttactatggcaacctcagaggagaagccaagaggactcaagctccagggaatgtggggaaggataatagagggtggtgtcccagggttaggacaggcag------------ctggttgatatctatgataagaaagcaagaattgagaagcagaagggtgaaggtgtttgacccaatacaaaatcatgatcccatcctcaatgcctagacctcagccaagatgcagattcagatctcagtgaca---gaggaggagtccatatctctaggcggaataccctgcaaccccgtggaagtatatgctggacaattcctcagtctcggcaagaaatataattactcagggacaattccctcagt-ccttcggcaaaggaacatatagccatttactcaggagattgtacactgggg--aaggaaacaggcagaactggggggattattgacactgggtgtgaactgacattgatgctcagatgcccacagcactatcaatgtctcccatcacagtggggcttacggaggtcagggagtaaa-ctggacacattatggcccacaatagaactactggatccatagacccagccctggttatcttcctataccctgagtgcataattgacactgatgcactgctaagtggagtcacccccacactgggtccctagtctgtggagtaaggactttcattgtgctgaaagccaaagggaaacctctgacactgcccccatcctggccaaatcaaaaatcatagtgtgtcccagggtggg---tcttgtggaagacacttcaagtattg--tgggggtcacatcaccattacagagctgaaggatgtgggatggtgttggggctgtctattgtctctacgtaatccagcaacctgtccctgaagaagcctgatgaagcct-aagaatgaactagattactccaggtctggccaagtaggagttataattgcagcttttgtgctgtctggatatcactggtagagca
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30474393 1097 + 172585720 aagaagtgttggggtgttgtcctctgcagactgggggtgatggtagtaaagacagtcccagagttgcatttattaatatccctggggagggtgtggccctgaagagacaaagaccaagtggtggcagtgatctgcaaaagccagacagcaccattactatgtcagcctcagaggggcagccaagaggactcaagctgcagggaatgtggggaaggttaatagagtttggtgtcccagggttaggacaggcaactaacaagggcactggttgatatttatgataataaagcaagaattgagaagcaggagggtaaaggtttttgaaccaatac--agtcatgatcccatcctcaatgcctagacctcagccaagattcagattcagatcccggtgaca---gacgtggagtccatatccctaagaggaataccctgtaacctcgtgaaagtatatgcc---------------------------------------gggacaatcccctcagtcccttcggcaaaggaacctatagtcatttactcaggagactgtaccctggggaaaaggaaacaggcagaactggggggattactgacactggctgtga-gggacactgatgcccagatgcccacagcaccatc-atgtctcctatcacagtggggcttacggaggtcaaggagtaaacctggacacattatggcccacaatgggaccactggattcacagacccagccctggttatcttccaattccctgagtgcataattgacactgatgcacttctaagtggagtcacccccacactgggtccctagtctgtggagtgacggctctcattgtgctgaaagacaaagggaaacctctgacactgcccccatcctggccaaatcagaaatcatagtgtgtcccaggttggg---tcttgtgaaagacgctgaaagaactggaggggggttgcaccaacgttagagagctgaaggatgcagggtggtgttgggg----ctattgtctctacgtaatccagtaacctgtacctgaggaagcctgacgaggcctaaagaatgaactagattactccaggtatgaccaagtaggagttatcattgcagcttttatgttgtctggatatcactggtagagca
i rheMac8.chr4             C 0 I 160
s chlSab2.chr17             29185479 1091 -  71996105 aagaagtgtcggggtgttgtcctctgcaggctggggat-atggtaataaagatggtctcagagttgcatttattaatatccttgggaggagtgtgaccctgaagagacagagaccaagtggtgacagtgacctgcagaagccagagggcatggttactatggcaacttcagaggagcagccaagaggactcgagctgcaggtagtggggggaaggttaatagagggtgatgccccaaggttaggacaggcagccaacaagggcgctgcttgatgtttatgataagaaagaaagaactgaggagcaggagggtgaaggtgtttgacccaatacaaagtcacgatcccatcctcaatgcctagacctcaaccaagattcagattcagatctcagtgaca---gaggaggagtccatatccctaggagaaagaccctgcaaccccacggaagtatatgct---------------------------------------gggacaattccctcagt-cattcggcagaggaacctatagtaatttacacaggagactgtacactgggg-aaaggaaacaggcagacctggggggattattagcactaggtgtga-gctacatggatgcccagatgcccacagcaccatc-atgtctctcatcaca-----gcttacggaggccagggagtaaacctggacacattatggcctacaatgggaccactggatccatagactcagccctcgttatcttccaattccctgagtgcataattgacactgatgcactgttaggtggagtcacccccacactgggtccctagtctatagagtaagggctgtcattgtgctgaaagcccaagggaaacctctgacactgcccccat-ctggccaaatcaaaaatcatagcgtgacccagg-tgcg---tcttgtggaagacattgcaagtattt--tggggtttgcaccaccaatagagagctgaaggatgaggggtggtgttgaggctgtctattgtgtctatgtaattcagcaacctgtccccgaggaagcctgaggaggtctaaagaatgaatgaaattactccaggtatggccaagtaggagttataattgcaacttttatgttgtctgaatatcaatgatagagca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1       29731 1090 -   1829203 aagaagtgtcggggtgttgtcctgtgcaggctgggggtgatggtagtaaacatggtcccagagttgcatttattaatatccctggggagggtgtggccctgaagagacaaagactaagtggtgacagtgacctgaaaaagccatagagcactgttactatggcagcctcagagtagcagccaagagcattcaagctgcagggaatgtggggaagcttaatagggggtggtgtcacagggttaggacaggcagtcaacaagggcacttgttgatatttatgataacaaagcaagaattgaggaacaggagggtaaaggtttttgacccaatacaaagtcatgatcccatcttcaatgcctagacctcagccaagattcagattcagatctcagtgaca---gaggaagtgac----------agaggaagaccctgcaatcctgtggaagtatatgcc---------------------------------------gggacaattccctcagt-ccttcagcaaaggaacctatagccatttactcgggagactatacactgggg-aaaggaaacaggcagaactgaggggattattgacactgagtgtgaggggacactgatgcccagatgcccacagcactatc-atgtctcccatcatagtggggcttacagaggtcagggagtaaacctggacacattatggcccacaatgggaccattggatccatagaccaagtcctggttatcttccaattccctgagtgcataattgacactgatgcactgctaagtggagccacccccacaatgggtccctagtctgtggtgtaagggctgtcattgtgctgtaagacaaaggaaaacctctgacactgactccatcctggccaaattagaaatcatagtgtgtcttggggtggg---tcttgaggaagacactgaaagtactgt-agggggtcgcaccaacattacagggctgaaggaggt-ggatgatgttcgagctatctattgtctctacgtagtccagcaacctgtcccttaggaagcctgatgaggcctaaagaatgaatgagattactccaggtacggccaagtaggagttataattgcagcttttatgttgtctggatatcactggtagagca
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1      457945 1099 -   1771730 aacaagtgtcagggtgttgtcctctgcaggttgggggtgacggtagtaaagatggtcccagggttgcatttatttatatccctggg-agagtgtggccctgaagagacaaagaccaagtagtgtcagtgacctgcaaaagccagagggcaccgttactatggcaacctcagaggagcaatgaagaggactcaagttgtagggaatgtgtggaaggttaatagagggtggcgtcccagggttaggacaggcagccagcaagggcactgcttgatatctatgataggaaagcaagaattgagggtcaggagggtgaaggtgtttgatgcaatacaaatttctgatcccatcatcagtgtctagacctcagccacgattcagattcagatctcagtgacagaggaggaggagtccatatccc-aggaggaacaccctgcaaccctgtggaggtgtatgct---------------------------------------gggacaattccctcagg-ccttcagcaaaaaaacctatagccctttactcaggagactgtacacttggg-aaaggaaacacgcagaactagggggattactgacactgggtgtgagctgacactgatgccctgatgcccacagcactacc-atg-cccccatcacagtggggcttatgaaggtcagggagtaaacctggacatgttatggctcacagtgcgaccactggatccgtatactaagccctggttatctcccaattccctgagtgcacaattgacatggataccctgctaagtggagtcactcccgcactgagtccctagtctgtggcataagggctctcattgtgctgaaagccaaagggaaacctctgactctgcccccatgctgggcagatcaaaaatcatagtgtgttccagtgtgggtcttcttgcagaagacagtgaaagtattg--tgggggtcacaccaccattagggacctaaaggatgcagggtggtgctgaggccgtctgttg---ctatgtaatccacccacctgtccctgaggaagcctgacgagtcctaaagaatgaatgagattactccaggtatgaccaagtaggagttataattgcagtttttatgttgtctg-atatcactggtagagcg
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             63865 1337 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macNem1.NW_012012100v1       75934 6710 +   1495729 M
e macFas5.chr4             141029073    0 + 170955103 I
e nomLeu3.chr1a             74827896 51683 + 122973662 T

a score=562575.000000
s hg38.chr6_GL000254v2_alt   1133669 355 +   4827813 gattaataaacccttggacacagagcatgcagctgtggatttggtgactgcatttctttccactccaattagaaagtggatatggagtgattcacattcatgtgggatcctcaaaacattgatttatcatttgtctcagggcta-ttgtaactcccctgacctctatagtatagtcttaagactatactaaacatactggatatccaataggatattaaatcagctcatatcattgacaacttcctgttgacctggctggatgagcagcaggtagaaagtgcactgtagtgcttggcaaaacacgggcactccagaaggtgaagataaaccttacaaagcttccagagtggccact
s panTro5.chr6              30086532 355 + 175400573 gattaataaacccttggacacagagcatgcagctgtggatttggtgactgcatttctttccactccaattagaaagtggatatggagtgattcacattgatttgggatcctcaaaacattgatttatcatttgtctcagggcta-ttgtaactcccctgacctctatagtgtagtcttaagactatactagacatactggatatccaataggatattaaatcagctcatatcattgacaacttcctattgacctgggtggatgagcagcaggtagaaagtgcactgtagtccttggcaaaacacgggcactccagaaggtgaagataaaccttacaaagcttcaagagtggccact
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30317196 355 + 173848474 gattaataaacccttggacacagagcatgcagctgtggatttggtgactgcatttctttccactccaattagaaagtggatatggagtgattcacattcatttgggatcctcaaaacattgatttatcatttgtctcagggcta-ttgtaactcccctgacctctatagtgtagtcttaagactatactagacatactggatatccaataggatattaaatcagcttatatcattgacaacttcttattgacctgggtggatgagcagcaggtagaaagtgcactgtagtccttggcaaaacacgggcactccagaaggtgaagataaaccttacaaagcttcaagagtggccact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6137874 354 +   6154872 gattaataaacccttggacacagagcacgcagctgtggatttggtgactgcatttctttccactccaattagaaagtggatatggagtgattcacattcgtgtgggatcctcagaacattgatttatcatttgtctcagggcta-ttgtaactcccctgacctctatagtgtagt-ttaagactatactagacatactggatatccaataggatattaaatcagctcatatcattgacaacttcctgttgacctgggtggatgagcagcaggtagaaagtgcactgtagtccttggcaaaacacgggcactccagaaggtgaagataaaccttacaaagcttcaagagtggccact
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17             29186570 349 -  71996105 gatta-taaagcctcgggcacacagcatgtagctgtggatctggtgagtgcgttcctttccacttcaattagaaagtggatatggagtgattcacattcatgtgggatccacaaaacatctatttatagtttgtctcagggctatttgtaactcccctgccctctatagcatagtcttaagactgtactagccacactgga-----tataggatattaaatcagctcgttttattgacaacttcctgttgactggggtggatgagcagcaggtaagaggtgcactgcagtccttgg-aaaacacatgcaatccagaatgtgaagacaaactttacagagcttcaagagtggccact
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1       30821 350 -   1829203 gattagtaaaacctagggcacacagcgtgcagctgtggatttggtgagtgcattcctttcctctccaattagaaagaggatatggagtgattcacattcatgtaggatccaccacacatttatttatagtttgcctcacagcta-ttgtaactcccctacccactatagtaca-----aagactacactaaacatactggatatcctataggatattaaatcagctcatttcattgacaatttcatgttgactagggtggatgagcagcaggtagaaagtgcactggagtccctggcaaaacaagcgcaccccagaaggtgaaggtaaaccttacagagcttcaagagtggccact
i colAng1.NW_012115577v1   C 0 I 1248
s cebCap1.NW_016107755v1      459044 352 -   1771730 gactaataaagccttgggcacacagcgtgcagctgtggatttggtgagtgcgtt-ctttcctctccaattagaaagtggatatggagtgattcacattcatgtgggatccac-acacatgtatttatagtctgcctcacggcta-tggtaactcccctcccctctatagtgtagtcttcagactgtgctagacatactggatgtcctgtgggatattgaatcagctcatttcattgacaacttcatgttgactggggtggatgagcagcagtcagaaagtgcaccggagtccttggcaaaacacatgc-ctccagaaggtgaagataaaccttacacagcttcaggagtggccact
i cebCap1.NW_016107755v1   C 0 I 3268
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             63865 1337 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e calJac3.chr4              30281384 10711 + 171630274 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macNem1.NW_012012100v1       75934 6710 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I
e rheMac8.chr4              30475490 160 + 172585720 I
e nomLeu3.chr1a             74827896 51683 + 122973662 T

a score=248361.000000
s hg38.chr6_GL000254v2_alt   1134024 297 +   4827813 cggccaggtgcagtggctcacgcctgtaatcccagcactttggaaggctgaggtggatggatcacctgaggttgggagttggagactagcctgaccaacacggagaaaccccatctctactaaaaatacaaaattatccaggcatggtggcccatgctggtaatcccagctacttgggaggctgaggcaggagaatcacttgaacccaggaggcagagattgcagtgagccaagatcgtgccattgcactccagagtgggcaacaagagcaaaattccatctcaaaaagaaaaagat
s panTro5.chr6              30086887 297 + 175400573 cggccaggcgcagtggctcacgcctgtaatcccagcactttggaaggccgaggtgggtggatcacctgaggttgagagttggagactagcctgaccaacacagagagaccccgtctctactaaaaatacaaaattatccaggcatggtggcgcatgccggtaatcccagctactcgggaggctgaagcaggagaatcacttgaacccaggaggcagagattgcagtgagccaagatcgtgccattgcactccagagtgggcaacaagagcaaaattccatctcaaaaagaaaaaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30317551 297 + 173848474 cggccaggcgcagtggctcacgcctgtaatcccagcactttggaaggccgaggtgggtggatcacctgaggttgggagttggagactagcctgaccaacacagagagaccccgtctctactaaaaatacaaaattatccaggcatggtggcacatgccggtaatcccagctactcgggaggctgaagcaggagaatcacttgaacccaggaggcagagattgcagtgagccaagatcgtgccattgcactccagaatgggcaacaagagcaaaattccatctcaaaaagaaaaaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6138228 296 +   6154872 cggccaggcgcagtggctcacgcctgtaatcccagcactttggaaggccgaggtgggtggatcacctgaggttgggagttggagactagcctgaccaacacagagagaccccgtctctactaaaaatacaaaattatccaggcatggtggcgcatgccggtaat-ccagctactcgggaggctgaagcaggagaatcacttgaacccaggaggcagagattgcagtgagccaagatcgtgccattgcactccagagtgggcaacaagagcaaaattccatctcaaaaagaaaaaaat
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17             29186919 296 -  71996105 cagccgagagcagtggctcatgcctgtaatcccagcactttgggtggccaaggtgggtggatcacctgaagtcgggagttggagacctgcctgaccaacatggagaaaccctgtttctgctaaaaatacaaaattatccgggtatggtggcacatgcctataatcccagctacttgggaggctgaggcaggagaaccacttgaatccgagaggcagaggttgcagtgagccaaggtggtggtaatgcagtccagagtgtgcaacaagagtgaaattacatct-acaaaaaaaaaagt
i chlSab2.chr17            C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             63865 1337 +    515838 I
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e cebCap1.NW_016107755v1      459396 3268 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e colAng1.NW_012115577v1       31171 1248 -   1829203 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macNem1.NW_012012100v1       75934 6710 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I
e rheMac8.chr4              30475490 160 + 172585720 I
e nomLeu3.chr1a             74827896 51683 + 122973662 T

a score=600795.000000
s hg38.chr6_GL000254v2_alt   1134321 517 +   4827813 agtgggcattgaagtaaagttttatgggtgaacaatggccaagtgtttaggggaatgcaggtgtgtcccctccaaggtaacagacaaactgtttcatcttgcatcctcaccagaaagaaggaagcacactgcctgatgagcctcttccagttctgacaacaccactttccacatctaggtatgttgctttggcccacactctaggtgacataggaggaggccagcttcaagtagggcccacacagaaaaggaccctgcagcagatccaggccatggtgcgagcagccaccatctctcagaccccctggtgctggtgatgccattggtagggaaagatgcaggatggagctgaaccaagcaccagtgggaaagtcacagtgaaaggcctgggattctggagtaaggtcatgtcattcacagcagagacatatgccacctattagaagcaacttttagtgtcccttgtcctgattagatagaatgcttgaccacgggacaccaagcaactatgtggtt-c
s panTro5.chr6              30087184 518 + 175400573 agtgggcattgaagtaaagttttatgggtgaacaatggccaagtgtttaggggaatgcagctgtgtcccctccaaggtaacagacaaactgtttcatcttgcatcctcaccagaaagaaggaagcacactgcctgatgagcctctttctgttctgacaacaccactttccacatctaggtgtgttgctttggcccacactctaggtgacataggaggaggccagcttcaagtggggcccacacagaaaaggaccctgcagcagatccaggccatggtgcaagcagccaccatctctcagaccccctggtgctggtgatgccattggtggggaaagatgcaggatggagctgaaccaagcaccagtgggaaagtcacagtgaaagccctgggattctggagtaaggtcatgtcattcacagcagagacatatgccacctattagaagcaacttttagtgccccttgtcctgattagatagaatgcttgaccacgggacaccaagcaactatgtggttcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30317848 518 + 173848474 agtgggcattgaagtaaagttttatgggtgaacaatggccaagtgtttaggggaatgcaggtgtgtcccctccaaggtaacagacaaactgtttcatcttgcatcctcaccagaaagaaggaagcacactgcctgatgagcctctttcagttctgacaacaccactttccacatctaggtgtgttgctttggcccacactctaggtgacataggaggaggccagcttcaagtggggcccacacagaaaaggaccctgcagcagatccaggccatggtgcaagcagccaccatctctcagaccccctggtgctggtgatgccattggtggggaaagatgcaggatggagctgaaccaagcaccagtgggaaagtcacagtgaaagccctgggattctggagtaaggtcatgtcattcacagcagagacatatgccacctattagaagcaacttttagtgccccttgtcctgattagatagaatgcttgaccacgggacaccaagcaactatgtggttcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6138524 515 +   6154872 agt-ggcattgaagtaaagttttatgggtgaacaatggccaagtgtttaggggaatgcaggtgtgt-ccctccaaggtaacagacaaactgtttcatcttgcatcctcaccagaaagaaggaagcacactgcctgatgagcctctttcagttctgacaacaccactttccacatctaggtgtgttgc-ttggcccacactctaggtgacataggaggaggccagcttcaagtggggctcacacagaaaaggaccctgcagcagatccaggccatggtgcaagcagccaccatctctcagaccccctggtgctggtgatgccattggtggggaaagatgcaggatggagctgaaccaagcaccagtaggaaagtcacagtgaaaggcctgggattctggagtaaggtcatgtcattcacaacagaggcatatgccacctattagaagcaacttttagtgtcccttgtcctgatttgatagaatgcttgaccacgggacaccaagcaactatgtggttcc
i gorGor5.CYUI01015250v1   C 0 C 0
s chlSab2.chr17             29187215 514 -  71996105 ag--gccactgaagtgatgttttatgggtgaacaagtgccaagtgtttaccagcttacagatgtgtcccctccaaggtaaaagacaaactgtttcgtcttgcatcctcaccagaaggcagaaagcacactgcctgatgaggttctttgagttctgacgacaccacattccacatctaggtaagctgctttggcccacactctaggtgacatagaaggaggccagcttcaagtgtggcctacacagggagggaccctacagcagatccaggccacagtgcaagcagccagcatcccttagatcccatggtgctggtggtgccagtggtagggaaagatgcaggatggagctgaaccaagcaccagtgggagagtcacagtggagggtct-caattctggagtaagatcaagtcATCCACAGCAGAGACATATGGCCCCTGTCAGAAGCAACTTTTAGTGTTTCTTGTCCTGATTAGATAGAATGCTTGACCACAGGACATCAAGCAATGATGTGATTC-
i chlSab2.chr17            C 0 I 1
s saiBol1.JH378341             65202 511 +    515838 agtggccactgaagtgaca-tttatgggtgaacaagtgccgagtgtttaggggaaagctgatgtgttccctccaagggaaaatacaaactgtcttagcttgcatcctcaccagaaggaaggaagcacaccccctgaagaggatctttgagttctg---acaccacattccacatctaggtatgttgccttggcccacactctaagtgacataggaggaggccaccttcaagtggggcctacacaggaaaggaccctgcagcagatccaggccatggtgcaagcagccaccttccctcagacccgctggtgctggtggtgccagtggtggggaaaaacggagaatggagctgagccaggcaccagtgggagagtcacagtggaggtcct-gaattctagagtaagATCATAATATCCGCAGCAGAGACACA-GCACCCTGTTACAAGCAACTTTTAACAATACTGGTCCTGATTTCATAGACTACTTGACCACAGGACACCAGGCAACTATGTGGTTC-
i saiBol1.JH378341         I 1337 I 1
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e cebCap1.NW_016107755v1      459396 3268 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e colAng1.NW_012115577v1       31171 1248 -   1829203 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macNem1.NW_012012100v1       75934 6710 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I
e rheMac8.chr4              30475490 160 + 172585720 I
e nomLeu3.chr1a             74827896 51683 + 122973662 T

a score=595753.000000
s hg38.chr6_GL000254v2_alt   1134838 350 +   4827813 gagtgcctgtgtgacccacagagtcatagattagacaggcccaacagcatccatcgtgaggtgaaaatggtccacctgggttgag------------------cttgaatcccatgtttacacccagagaaaatacccaagtctgaagtggcactgaacaaccaaacagacaaatggaagttagccagccttcaccatgggtcagccctggtttggtaggatgagttcatgaatggagcaaccacagtggcaggcatgaggctacgtatggggccaacagcactgactcccccctaccaaggcagatccagctgccgacacctctgaatgtccaactcattagcaattgaggcccatgatgtgcccca
s panTro5.chr6              30087702 350 + 175400573 aagtgcctgtgtgacccacagagtcatagattggacaggcccaacagcatccatcatgaggtgaaaatggtccacctgggttgag------------------cttgaatcccatgttgacacccacagaaaatacccaagtctgaagtgacactgaacaaccaaacagacaaatggaagttagccagccttcaccatgggtcagccctggtctggtaggatgagttcatgaatggagcaaccacagtggcaagcatgaggctatgtatggggccaacagcactgactcccccctaccaaggcagatccagctgccgacacctctgaatgtccaactcatcagcaattgaggtccatgatgtgcccca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30318366 350 + 173848474 aagtgcctgtgtgaccctcagagtcatagattggacaggcccaacagcatccatcatgaggtgaaaatggtccacctgggttgag------------------cttgaatcccatgttgacacccacagaaaatacccaagtctgaagtgacactgaacaaccaaacagacaaatggaagttagccagccttcaccatgggtcagccctggtctggtaggatgagttcatgaatggagcaaccacagtggcaagcatgaggctatgtatggggccaacagcactgactcccccctaccaaggcagatccagctgccgacacctctgaatgtccaactcatcagcaattgaggtccatgatgtgcccca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6139039 349 +   6154872 aagtgcctgtgtgacccacagagtcatagattggacaggcccaacagcatccatcatgaggtgaaaatggtccacctgggttgag------------------cttgaatcccatgttgacacccacagaaaatacccaagtctgaagtggcactgaacaaccaaacagacaaatggaagttagccagccttcaccatgggtcagccctggtctggtaggatgagttcatgaatggagcaaccacagtggca-gcatgaggctatgcatggggccaacagcactgactcccccctaccaaggcagatccagctgctgacacctctgaatgtccaactcatcagcaattgaggtccatgatgtgcccca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74776213 350 + 122973662 aagtgcctgtgtgacccacgaagtcatagatggtacaaacccaacagcatccatcatgaggtgaaaatggtccacctgggttgag------------------cttgaatcccaagttgacacccacagaaaacacccaagtctgaagtgacagtgaacaaccaaacagacaaatggaagttagccagccttcaccatgggtcagcccaggcctggtaggaagggtgcatgaatggagcaaccacagaggcaggcatgaggctatgtatggggccaacagcactgactcccccctaccaaggcagatccacctgctgccacctctgaatgtccaactcattagcatttgaggcccatgatgtgcccta
i nomLeu3.chr1a            T 51683 C 0
s chlSab2.chr17             29187730 367 -  71996105 AAGTGTCTTTCTgacccacaaagtcataaattgcgcaggcccaacagcattcatcaggaaatgaaaatggtccactcgggTTGAGTTTGAATCCCATGTTGACCCtgaatcccatgttgacccccacagaaaacacccaagtctgaagtggcactgaacaagcaaacagacaaatggaagttagct-gccttcaccatgggtgagcccaggcctggtaggatgggtgcatgaatggagcaaccacagtggcagacgtgaggccatgtatggggacagcagcactgactcccccctaccaaggcagatccagctgctgccacctctgaatgtccaactcatcggcatttgaggcccatgatacgcccta
i chlSab2.chr17            I 1 C 0
s saiBol1.JH378341             65714 348 +    515838 AAGTGCCTTTGTGAACCACAAAATCACAGATTGCACAGGCCCAACAGCATCCATCATGAGGTGAAAATGGCCCACCTGGGTTGAA-------------------ttgaatcccatgttgacaccttcagaaaacatccaagtctgaagcggcactgaacaaccaaacagac-aatggaagttagccggccctcaccgtgggtcagcccaggcctggtaggatggactcatgaatggagcaagcacagtggcaggcatggggctacatatgggaccagaagcactgacttccccctgccaaggcagacccagctgctgccacctctgaatgtccaattcatcagcatttgaggcccatgatgtgctcta
i saiBol1.JH378341         I 1 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e cebCap1.NW_016107755v1      459396 3268 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e colAng1.NW_012115577v1       31171 1248 -   1829203 I
e manLeu1.NW_012101121v1       65299 65848 +    273075 I
e macNem1.NW_012012100v1       75934 6710 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I
e rheMac8.chr4              30475490 160 + 172585720 I

a score=4500.000000
s hg38.chr6_GL000254v2_alt   1135188 1 +   4827813 g
s panTro5.chr6              30088052 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30318716 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6139388 1 +   6154872 g
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74776563 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30475650 1 + 172585720 G
i rheMac8.chr4             I 160 C 0
s chlSab2.chr17             29188097 1 -  71996105 g
i chlSab2.chr17            C 0 N 0
s manLeu1.NW_012101121v1      131147 1 +    273075 G
i manLeu1.NW_012101121v1   I 65848 C 0
s colAng1.NW_012115577v1       32419 1 -   1829203 G
i colAng1.NW_012115577v1   I 1248 C 0
s saiBol1.JH378341             66062 1 +    515838 g
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e cebCap1.NW_016107755v1      459396 3268 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e macNem1.NW_012012100v1       75934 6710 +   1495729 M
e macFas5.chr4             141029073 0 + 170955103 I

a score=1610609.000000
s hg38.chr6_GL000254v2_alt   1135189 442 +   4827813 tggggcactatttctttaggtgactaactagccactaagtaacaagttgactacatttagctacttccatcctggaagggccagaggttcatcttcacagggataggctcctattccatgggt--gttttcatgtcctgctctcagaaactcagccagcac--ctctccgggtgctgttgacattcctgatctgcaggctaggcggtgctc-ctagcccattatctgcctgaaggacccacttggctgggaaagtttcagtgtttccatggctgtgggttccactaatcctatcaccatctgcaccatccagaggctgccagccacaaggaatgctggacaggtcttctacaggcaaaactcagtgccagcctggaggaagcactctgagaggtgggtgccatcttttaggacacggtgcattgtttgaatcagagatgtctctaga
s panTro5.chr6              30088053 444 + 175400573 tggggcactatttctttaggtgactaactagccactaagtaacaagttgactacatttagctacttccatcctggaagggccagaggttcatcttcacagggataggctcctattccatgggt--gttttcatgtcctgctctcagaaactcagccagcaccactctccgggtgctgttgacattcctgatctgcaggctaggcggtgctc-ctagcccattatctacctgaaagacccacttggctgggaaagtttcagtgtttctatggctgtgggttccactaatcctatcaccatctgcaccatccagaggctgccagccacaaggaatgctggacaggtcttctataggcaaaactcagtgccagcctggaggaagcactctgagaggtgggtgccatctttcaggacacggtgcattgtttgaatcagagatgtctctaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30318717 444 + 173848474 tggggcactatttctttaggtgactaactagccactaagtaacaagttgactacatttagctacttccatcctggaagggccagaggttcatcttcacagggataggctcctattccatgggt--gttttcatgtcctgctctcagaaactcagccagcaccactctccgggtgctgttgacattcctgatctgcaggctaggcggtgctc-ctagcccattatctgcctgaaagacccacttggctgggaaagtttcagtgtttctatggctgtgggttccactaatcctatcaccatctgcaccatccagaggctgccagccacaaggaatgctggacaggtcttctacaggcaaaactcagtgccagcctggaggaagcactctgagaggtgggtgccatctttcaggacacggtgcattgtttgaatcagagatgtctctaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6139389 445 +   6154872 tggggcactatttctttaggtgactatctagccactaaataacaagttgactacatttagctacttccatcctggaagggccagaggttcatcttcacagggataggctcctattccatgggt--gttttcatgtcctgctctcagaaactcagccagcaccactctccgggtgctgttgacattcctgatctgcaggctaggcagtgctcgctagcccattatctgcctgaaagacccacttggctgggaaagtttcagtgtttctatggctgtgggttccactaatcctatcaccatctgcaccatccagaggctgccagccacaaggaatgctggacaggtcttctacaggcaaaactcagtgccagcctggaggaagcactctgagaggtgggcgccatctttcaggacacggtgcattgtttgaatcagagatgtctctaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74776564 434 + 122973662 tggggcactgtttctttaggtaactacctagctactaagtgacaagttgactacatttagctacctccatcctggaagggccacaggttcatcttcacaggattaggcacctattctgtgggtgggtttttctgtcctgctctcagacactcagccagcaccactctctgggggctgttcacattcctgatccgcaggctaggcggtgctc-ctagcccattatctgcctgaaggacccacttggcagggaaagtttcagtgtttccatggctgt------------tcctatcaccatctgcaccacccaggggctgccagccacaagtaatgctggacaggtcttctacaggcacagctcagtgccagcatggaggaagcactctgaggggtgggtgccatccttcaggacatgatgcattgcttgaatcagagacatctctaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30475651 436 + 172585720 TGGggcactattt-tttaggtgactaactagccactaagtaacaaggtgacaacatttagctactttcatcctgaaagggccagaggttcatcttca------taggctcctattccatgggt--gttttcctgtcctgctctcagacactcagccagcaccactctctgggtgctgttgacattcttggtctgcaggccaggcagtgctc-ctagcccatta-ctgcctgaaagactcacttggcagggaaagttttagtgtttccatggctgtggcttccactaatcctatcaccatctgcaccacccagaggctgccagccacaaggaatgctgcacaggtcttctacaggcacagctcagtgccagcctggaggaagcactccgaggggtggctgccatctttcaagacatggtgcattgtttgaatcagagacgtctctatg
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29295443 443 -  71996105 TGGggcactattt-tttaagtgactagctagccactaagtaacaaggtaacaacatttagctactttcatcctggaagggccagaggttcatcttcacaggggtaggctcctattccaagggt--gttttcatgtcctgctctcagacactcagccagcaccactctctgggtgctgttgacattcttggtctgcaggccaggcggtgctc-ctagcccattatctgcctgaaagacccacttggcagggaaagttttacggtttccatggctgtgggttccactaatcctatcaccatctgcaccacccagaagctgccagccacaaggaatgctgcacaggtcttctacaggcacagctcagtgccagcctggaggaagcactctgaggggtgggtgccatctttcaagacaaggtgcattgtttgaatcagagacgtctccatg
i chlSab2.chr17            N 0 C 0
s manLeu1.NW_012101121v1      131148 442 +    273075 TGGggcaccattt-tttaggtgactaactagccactaagtaacaaggtgactacatttagctacttccctcctggaagggccagaggttcatcttcacagggataggctcctagtccacgggt--gttttcctgtcctgctctcagacactcaaccagcaccactctctgggtgatgttgacattcttggtctgcaggccaggcggtgctc-ctagcccataatctgcctgaaagacccacttggcagggaaagttttagtgtttccatggctgtgggttccactaatcctatcaccatctgcaccacccagaggctgccagccacaaggaattctggacaggtcttctacaggcacagctcagtgccagcctgga-gaagcactctgaggggtgggtgccatctttcaagacatggtgcattgtttgaatcagagacgtctccatg
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       32420 443 -   1829203 TGGggcactatttctttaggtgactacctagccactaagtaacaggttgactacatttagctacttccatcctggaagggccagaggttcatcttcacaggtataggctcctattccatgggt--gttttcacgtcctgctgtcagacactcagccagcaccactccctgggtgctgttgacattcctgatccacatgctaggcggtgctc-ctagcccattacctgcctgaaagacccacttggcagggaaagttttagtgtttccatggctatgggttctactaatcctatcaccatctgcaccacccagaggctgccagccacaaggaaggctggacaggtcttctataggcacagctcagtgccagcctgga-gaagcactctgaggggtgggggccatctttcaagacacggtgcattatttgaatcagagacgactctaca
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             66063 442 +    515838 tggggcactatttctttaggtgactaactagccactgagtaacaaggtgactacatttagacacttccattctggaagggccacaggttcatcttcacagggttaggcacctattccatgggt-gggtttcctgtcctgctgtcagacactcagccagcaccactctccaggtgctgtt-acattcctgatctgcaggctaagcattgctc-ctagcccattatctgcctgaacgacccacttggcagggaaagtttcagcgtttccgtggctgtgggttccactaatcctactaccatctgcaccacccaggggctgctagccacaaggaatgctggacaggtcttctacaggcaaaactcagcaccagcctggaggaagcaatc--aggtgtgggtgcagtctttcaggacatggtgcattgtttgaaacagagatatctgtacg
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e cebCap1.NW_016107755v1      459396 3268 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e macNem1.NW_012012100v1       75934 6710 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=1309941.000000
s hg38.chr6_GL000254v2_alt   1135631 313 +   4827813 gtgctgtgttctcaataggaagaacatgtgtgtccagggatcaaaagatggaagcaggtttggctccacgtccaatcccttagattcacccaatggggtattttgcacgttttatcttccaacactgggctgtgcagggtacgaggtcctggtttccaaggagggtacccttaaaaggagacaaaagacagcccactgaactacacattatggttgtcacgagagaagttttgatagtttgtgcccagagaccacctggtgaaaagaggattctcctcctctccaggcccaggtaacagatcctcatcttcag------------------
s panTro5.chr6              30088497 313 + 175400573 gtgctgtgttctcaataggaagaacatgtgtgtccaggaatcaaaagatggaagcaggtttggctccacgtccaatcccttagattcacccaatggggtattttgcatgttttatcttccaacactgggctgtgcagggtacgaggtcctggtttccaaggagagtacccttaaaaggagacaaaagacagcccactgaactacacattacggttgtcacgagagaagttttgatagtatgtgcccagaggccacctggtgaaaagaggattctcctcctctccaggcccaggtaatagatcctcatcttcag------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30319161 313 + 173848474 gtgctgtgttctcaataggaagaacatgtgtgtccaggaatcaaaagatggaagcaggtttggctccacgtccaatcccttagattcacccaatggggtattttacatgttttatcttccaacactgggctgtgcagggtacgaggtcctggtttccaaggagagtacccttaaaaggagacaaaagacagcccactgaactacacattacggttgtcacgagagaagttttgatagtatgtgcccagaggccacctggtgaaaagaggattctcctcccctccaggcccaggtaatagatcctcatcttcag------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6139834 313 +   6154872 gtgctgtgttctcaataggaagaacatgtatgtccaggaatcaaaagatggaagcaggtttggctccacgtccaatcccttagattcacccaatggggtattttgcacgttttatcttccaacactgggctgtgcagggtacgaggtcctggtttccaaggagggtacccttaaaaggagacaaaagacagcccactgaactacacattacggttgtcacgagagaagttttgatagtatgtgcccagagaccacctggtgaaaagaggattctcctcctctccaggcccaggtaatagatcctcatcttcag------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74776998 311 + 122973662 gtgctgtgttctcaataggaagaacatgtgtgtccagaaatcaaaaggtggaagcaggtttggctccatgtccaatgtcttagattcactcaatggggtattttgcatattttatctcccaacactgggctgtgcaggatacgaggttctggtttcca--gagggtacccttaaaaggagacaaaagacagcccactgaactacacattacggttgtcaccagagaagtttggacagtatgtgcccagaaaccacttggtgagaagaagggtctcctcctctccaggcccaggtaatagatcctcatccccag------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30476087 301 + 172585720 gtgctgtgttctcaattggaagaacatgtgtgtccacaaatcgaaaggcagaagcaggtttggcttcatgtccaatcccttagattcacctaatggggtattttgcatgttttatctttgaa------------cagggtatgaggtcctgctttccaaggagggtacccttaaaaggagacaaaagacagcccactgaactacagatgacggttgtcaccagagaagtttggacagtatgtgcccagagaccacctggtgaaaagaggattctcctcctctccaggcccaggtaatagaccctcatccccag------------------
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       82654 301 +   1495729 GTGCTGTGTTCTCAATTGGAAGAACATGTGGGTCCAGAAATAAAAAGGCGGAAGCAGGTTtggctccatgtccaatcccttagattcacccaatggggtattttgcatgttttatctttgaa------------cagggtacgaggtcctgctttccaaggagggtatccttaaaaggagacaaaagacagcccactgaactacacatgatggttgtcaccagagaagtttggacagtgtgtgcccagagaccacctggtgaatagaggattctcctcctctccaggcccaggtaatagatcctcatccccaa------------------
i macNem1.NW_012012100v1   M 6710 C 0
s chlSab2.chr17             29295886 301 -  71996105 gtgccgtgttctcaattggaagaacatgtgtgtccacaaatcaaaaggcggaagcaggtttggctccatgtccaatcccttagattcacctaatggggtattttgcatgttttatctttgaa------------cagggtacgaagtcctgctttccaaggagggtacccttaaaaggatacaaaagacaacccactgaactacacatgatggttgtcaccagagaagtttggatagtgtgtgcccagagaccacctggtgaaaagaggattctcctcctctccaggcccagataatagatcctcatccccaa------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      131590 301 +    273075 gtgctgtgttctcaattggaagaacatgtgggtccagaaatcaaaagtcagaagcaggtttggctccatgtccaatcccttagattcacccaatggggtattttgcatgttttatctttgaa------------cagggtatgaggtcctgctttccaaggagggtacccttaaaaggagacaaaagacagcccactgaactacacatgatggttgtcaccagagaagtttggacactgtgtgcccagagaccacctggtgaaaagaggattctcctcctctctagacccgggtaatagaccctcattcccag------------------
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       32863 313 -   1829203 gtgctgtgttctcaacaggaagaacatgagggtccagaaatcaaaaggcagaagcaggttttgttccacgtccaatcccttaaattcacccactggggtattttgcatgttttatcttcgaacactgggttgtgcagggtacgaggtcctggtttccaaggagaatacccttaaaaggagacaaaagtcagtccactgaactacacattatggttgtcaccagagaagtgtggacagtatgtgcctggagaccacctggtgaaaacaggattctcctcctctccaggcccaggtaacagatccttatccccag------------------
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             66505 326 +    515838 gtgctgtgttctcaataggaagaacgtgtgggttcagaaaccaaaaggtggaagcaggcatggatccctgtccaatctcttggattcccccagtgaggtattttgcatgttttatctcccaacactgggctgtgcatggtaggaggtcctggtttccaa----agtacccttaaaaggaga-aagagacagcccattgaactacacattacaactgtcaccagagaagtttaaactgtatgtaaccagagaccagcacgtgagaagatgagtctcttcgtctccgggaccagataatagatcctcatccttggctgaatacatccagccaa
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17116845 22835 -  18854210 I
e aotNan1.NW_018496904v1       66657 68204 -    383796 I
e cebCap1.NW_016107755v1      459396 3268 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e macFas5.chr4             141029073   0 + 170955103 I

a score=355860.000000
s hg38.chr6_GL000254v2_alt   1135944 64 +   4827813 gagaaggcatggctactttcacacaatgagggcggaagtgtgtgtggaaaccagagatccacct
s panTro5.chr6              30088810 64 + 175400573 gagaaggcatggctactctcacacaatgagggcagaagtgtgtgtggaaaccagagatccacct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30319474 64 + 173848474 gagaaggcatggctactctcacacaatgagggcagaagtgtgtgtggaaaccagagatccacct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6140147 64 +   6154872 gagaaggcatggctactttcacacaatgagggcagaagtgtgtgtggaaaccagagatccacct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74777309 64 + 122973662 gagaaggcatggctactttcacacaatgagggtagaagtgtgtgtggaaaccagacatccacct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30476388 64 + 172585720 gaggaggcatggctactttcacacaatgagggcagaagtgtgtgtggaaaccagacatccacct
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       82955 64 +   1495729 gagaaggcacagctactttcacacaatgagggcagaagtgtgtgtggaaaccagagatccgcct
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29296187 64 -  71996105 gagaaggcacagctactttcacacaatgagggcagaagggtgtgtggacaccagagatccgcct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      131891 64 +    273075 gaggaggcatggctactttcacacaatgagggcagaagtgtgtgtggaaaccagacatccagct
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       33176 64 -   1829203 gaggaggcatggctactttcacacaatgagggtagaattgtatgtggaaaccagagatccacct
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             66831 64 +    515838 taggaggcatggctactttcacacaatgagagaagaagtatgtgtggaaaccagagatctacct
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1      134861 64 -    383796 gaggaggcatggctactttcacacaatgagagcagaagtatgtgtagaaaccagagatccacct
i aotNan1.NW_018496904v1   I 68204 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17116845 22835 -  18854210 I
e cebCap1.NW_016107755v1      459396 3268 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e macFas5.chr4             141029073  0 + 170955103 I

a score=831472.000000
s hg38.chr6_GL000254v2_alt   1136008 139 +   4827813 gggggccttctggtttcccttacctcattgtaagtgtgagcagaatcatccagcaattcagcctgagacagcttgatttccaaggacccagacccgtcagggcagaaggtttgagt---aatgcTGGGTAATCTcccaaggc
s panTro5.chr6              30088874 139 + 175400573 gggggccttctggtttcccttacctcattgtaagtgtgagcagaatcatccagcaattcagcctgagacagcttgatttccaaggacccagatccatcagggcagaaggtttgagt---aatgcTGGGTAATCTcccaaggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30319538 139 + 173848474 gggggccttctggtttcccttacctcattgtaagtgtgagcagaatcatccagcaattcagcctgagacagcttgatttccaaggacccagatccatcagggcagaaggtttgagt---aatgcTGGGTAATCTcccaaggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6140211 138 +   6154872 gggggccttctgatttcccttacctcattgtaaatgtgagcagaatcatccagcaattcagcctgagacagcttgatttccaaggacccagacccatcagggcagaagg-ttGAGT---AATGCTGGATAATCTcccaaggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74777373 142 + 122973662 gagagccttctggtttcccttgccccattgtaagtgtgagcagaatcatctagcaattcagcctaagaggatttgatttccaagggccaagacccggcagggcagcaggtttgagtcacactcctgggtaaTCTcccaaggc
i nomLeu3.chr1a            C 0 T 62486
s rheMac8.chr4              30476452 141 + 172585720 gggggccttctggttccccttgcctcatttcaagtgtgagcagaatcatccagcaattcaacctgagacaacttgatttcaaagggcgcagaccggtcagggcagaaggtttgagtcacactcccgggtaaTCTCCC-gggc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       83019 142 +   1495729 gggggccttctttttccccttgcctcattttaagtgtgagcagaatcatccagcaattcagccagagacgacttgatttcaaagggcgcagacccatctgggcagaaggtttgagtcacactcctgggtaaTCTcccaaggc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      136130 142 -    863181 GGGGGCCTTCTGGTTCCCCTTGCCTCATTTCAAGTGTGAGCAGAATCATCCAGCAATTCAGCCAGAGATGACTTGATTTCAAAGGGTGCAGACCCATCAGGGCAGAAGGTTTAAGTCACACTTCCGGATAATCTcccaaggc
i cerAty1.NW_012002535v1   N 0 C 0
s chlSab2.chr17             29296251 142 -  71996105 gggggccttctttttccccttgcctcattttaagagtgagcagaatcatccagcaattcaccctgagacgacttgatttcaaagggcgcagacccatctgggcagaaagtttgagtcacactcctgggtaaTCTcccaaggc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      131955 142 +    273075 gggggccttctggttccccttgcctcatttcaagtgtgagcagaatcatccagcaattcagccagagatgacttgatttcaaagggtgcagacccgtcagggcagaaggtttaagtcacacttccgggtaaTCTcccaaggc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       33240 142 -   1829203 gggggccttctggtttcccttacctcaatgtaagtgtgagcagaatcattcagcaattcagcctgagacgacttgatttccaaaggcccagacccatcagggcagaaggtttgagtcacactcatggataatctcccaaggc
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             66895 142 +    515838 gggagtcttctggtttcccttcccccattgtaagtgtgagcagaatcatccagcaattcagcctaagatcatttgatttccaagggcccagatccatcagggcagaaggtttgagtcacactcctgggtGGTCTcccaaggc
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1      134925 142 -    383796 gggagccttctgatttcccttaccccattgtaagtgtgagcagaatcatccagcaattcagcctgagattatttgatttccaaaggcccagatccatcagggcagaaggtttgagtcacacTCCTGAGTTATCTcccaaggc
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17116845 22835 -  18854210 I
e cebCap1.NW_016107755v1      459396 3268 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e macFas5.chr4             141029073   0 + 170955103 I

a score=573234.000000
s hg38.chr6_GL000254v2_alt   1136147 110 +   4827813 cctgctcctgtgctctgacatcctcagtagcattggtgctgaggtcctgcttccaatgggctgttcccaaccagtgacagatcacaccagtgacacgaaagcaggacatt
s panTro5.chr6              30089013 110 + 175400573 cctgctcctgtgctctgacatcctcagaagcattggtgctgaggccctgcttccaatgggctgttcccaaccagtgacagatcacaccagtgacacgaaaacaggacatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30319677 110 + 173848474 cctgctcctgtgctctgacatcctcagaagcattggtgctgaggccctgcttccaatgggctgttcccaaccagtgacagatcacaccagtgacacgaaaacaggacatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6140349 110 +   6154872 cctgctcctgtgctctgacatcctcagaagcattggtgctgaggccctgcttccaatgggctgttcccaaccagcgacagatcacaccagtgacacgaaagcaggacatt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30476593 110 + 172585720 cctgctcctgtgctctgacaccctcagtagcattggtgctgaggctctgcttcccatgggttgtacccaaccagtgacgggtcataccagtgacgctaagggaggacatt
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       83161 110 +   1495729 cctgctcctgtgctctgacaccctcagtagcattggtgctaaggccctgcttcccatgggctgttcccaaccagtgacgggttataccagtgacactaaggcaggacatt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      136272 110 -    863181 cctgctcctgtgctctgacaccctcagtagcattggtgctgaggctctgcttcccatgggctgttcccaaccagtaatgggtcataccagtgacgctaagggaggacatt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29296393 110 -  71996105 cccgctcctgtgctctgacaccctcagtagcattggtgctgaggccctgcttcccatgggctgtacccaaccggtgacgggtcataccagtgacactaaggcaggacatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      132097 110 +    273075 cctgctcctgtgctctgacaccctcagtagcattggtgctgaggctctgcttcccatgggctgttcccaaccagtgacgggtcataccagtgacgctaagggaggacatt
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       33382 110 -   1829203 TGTgctcctgtgctctgacatcctcagtagcactggtgctgaggctctgcttcccatgggctgttcctaaccagtgactggtcacaccagtggcactgaggcaggacatt
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             67037 110 +    515838 cctgctcctgtgctctgacatcttcagtagcattggtggtgaggggcttcttcctatgggctgctcccaaccagtgatgcgtcacaccagtgacactaaggcaggacatt
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1      135067 110 -    383796 cctgcacctgtgccctgacatccgcagcagcattggtggtgaggggctccttcctatgggctgctctctaccagttatgggtcacaccagtgacactaaggcaggacatt
i aotNan1.NW_018496904v1   C 0 I 44283
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17116845 22835 -  18854210 I
e cebCap1.NW_016107755v1      459396 3268 -   1771730 I
e calJac3.chr4              30281384 10711 + 171630274 I
e macFas5.chr4             141029073   0 + 170955103 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=798386.000000
s hg38.chr6_GL000254v2_alt   1136257 131 +   4827813 cctgggagaccagggactcctctgatggccaactgtagctcaaggactcctccatggccttgcttaactctccttagattgcctgtggtctacggcacatccagtaaaccttgtctccttctgtccatcac
s panTro5.chr6              30089123 131 + 175400573 cctgggagaccagggactcctctgatagccaactgtagctcaaggactcctccatggccttgcttaactctccttagattgcctgtggtctagggcgcatccagtaaactttctctccttctgcccatcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30319787 131 + 173848474 cctgggagaccagggactcctctgatagccaactgtagctcaaggactcctccatggccttgcttaactctccttagattgcctgtggtctagggcgcatccagtaaactttctctccttctgcccatcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6140459 131 +   6154872 cctgggagaccagggactcctctgatagtcaactgtagctcaaggactcctccatggccttgcttaactctccttagatttcctgtggtctagggcgcatccagtaaactttctctccttctttccatcac
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30476703 129 + 172585720 tctgggagac-ggggactcctctgatgaccaactgtacctcaaggactcctctatggccttgcttaactctccttagattgcctgtggtctaggacatgtccagtaaaccttctctcc-tctgtccatcac
i rheMac8.chr4             C 0 I 28
s macNem1.NW_012012100v1       83271 131 +   1495729 cctgggagacaggggagtcctctgatgaccaactgtacctcgaggactcctctatggccttgcttaactctccttagattgcctgtggtctaggacatgtccagtaaaccttctctccttctgtccatcac
i macNem1.NW_012012100v1   C 0 I 3
s cerAty1.NW_012002535v1      136382 130 -    863181 tctgggagacaggggactcctctgatgaccaactgtacctcgaggactcctctatggccttgcttaactctcattagattgtatgtggtctaggacatgtccagtaaaccttctctcc-tctgtccatcac
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17             29296503 131 -  71996105 cctgggagacaggggactcctctgatgaccaactgtaccttgaggactcctctacggccttgcttaactctccttagattgcctgtggtctaggacatgtccagtaaaccttctctccttctgtccatcac
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012101121v1      132207 130 +    273075 tctgggagacaggggactcctctgatgaccaactgtacctcgaggactcctctatggccttgcttaactctcattagattgtatgtggtctaggacatgtccagtaaaccttctctcc-tctgtccatcac
i manLeu1.NW_012101121v1   C 0 I 1
s colAng1.NW_012115577v1       33492 131 -   1829203 cctgggagacaggggactcatatgatgaccagctgtagcttgaggactcctccttggccttgcttaactctccgtagactgcctgtggtctaggacccatctagtaaaccttctctccttctgtccatcac
i colAng1.NW_012115577v1   C 0 I 10
s calJac3.chr4              30292095 120 + 171630274 cctgggagacaggtgactcctctgatggccaattctgcctccaggactcctccatggccttgctcaactcttttta----ggttggggtctaggac-cctccAGTAAACCT------CTCCTGTCCATCAC
i calJac3.chr4             I 10711 C 0
s saiBol1.JH378341             67147 127 +    515838 ccagggagacaggggacacctctgatgacaaactatggctccagaa---ctttatggccttgctcaactttccttacattgtttgtggtctcggacacatacagtaaaacttctc-ccctctgtccatcac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      462664 128 -   1771730 cctgggagacagggaactcctctgaaggccagctgtggctccaggactcctccgtggccttcctcaactctccttagattgtctgtggtctaggacaagtccagtgaaccttcactccttctgtccat---
i cebCap1.NW_016107755v1   I 3268 C 0
s aotNan1.NW_018496904v1      179460 122 -    383796 cctgggagacagg-gtctcctctgatggccaattttgcctccaggactcctccatggtcttgctcaactctcctta----gattgtggtctaggac-cctccagtaaaccttct---ctcctgtccatcac
i aotNan1.NW_018496904v1   I 44283 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17116845 22835 -  18854210 I
e macFas5.chr4             141029073   0 + 170955103 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=67316.000000
s hg38.chr6_GL000254v2_alt   1136388 22 +   4827813 tgggg--atcacctttgcatcttg-----
s panTro5.chr6              30089254 22 + 175400573 tgggg--atcacctttgcatcttg-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30319918 22 + 173848474 tgggg--atcacctttgcatcttg-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6140590 22 +   6154872 tgggg--atcacctttgcatcttg-----
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012012100v1       83405 22 +   1495729 ggggt--gttacactcgcatcttg-----
i macNem1.NW_012012100v1   I 3 I 5
s cerAty1.NW_012002535v1      136513 22 -    863181 ggagg--gtcacactcgcatcttg-----
i cerAty1.NW_012002535v1   I 1 I 5
s chlSab2.chr17             29296635 24 -  71996105 ggggggcgtcacactcgcatcttg-----
i chlSab2.chr17            I 1 I 5
s manLeu1.NW_012101121v1      132338 22 +    273075 ggagg--gtcacactcacatcttg-----
i manLeu1.NW_012101121v1   I 1 I 5
s colAng1.NW_012115577v1       33633 22 -   1829203 ggggg--gtcacacttgcatcttg-----
i colAng1.NW_012115577v1   I 10 I 5
s calJac3.chr4              30292215 27 + 171630274 TGATG--ATGACACTTGTGTCTTCATCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341             67274 27 +    515838 tgggg--gtcacacttgcatcttggtctg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      462792 18 -   1771730 -----------cacttacaTCTTTATCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      179582 27 -    383796 tgagg--gtgacacttacatcttcatctg
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17116845 22835 -  18854210 I
e macFas5.chr4             141029073  0 + 170955103 I
e rheMac8.chr4              30476832 28 + 172585720 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=1677009.000000
s hg38.chr6_GL000254v2_alt   1136410 260 +   4827813 ttgcctttcccagggtaacctacctcccttgccatatcacctgacaggtgtgtcccctaataaaatg-ctataactttaatcccatgatggaacttgctttttggagcatttggactaTAAAATCATTTTCATCTGCCCACTAGTGATCTCTTACTTATTCCAATGTGTAAA--ATCTTTTTGTTTATTCAAC---TTCTACCTGCATTGGCTCCATTTTGCTGGTATTTGTAGTATGCTTTtgagttcctcaatgtttattgttt
s panTro5.chr6              30089276 260 + 175400573 ttgcctttcccacggtaacctacctcccttgccatatcgcctgacaggtgtgtcccctaataaaatg-ctataactttaatcccatgatggaacttgctttttggagcatttggactaTAAAATCATTTTCATCTGCTCACTAGTGATCTCTTACTTATTCCAATGTGTAAA--ATCTTTTTGTTTATTCAAC---TTCTACCTGCACTGGCTCCATTTTGCTGGTATTTGTATTATGCTTTTCAGTTCCTCaatgtttgttgttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30319940 260 + 173848474 ttgcctttcccacggtaacctacctcccttgccatatcgcctgacaggtgtgtcccctaataaaatg-ctataactttaatcccatgatggaacttgctttttggagcatttggactaTAAAATCATTTTCATCTGCTCACTAGTGATCTCTAACTTATTCCAATGTGTAAA--ATCTTTTTGTTTATTCAAC---TTCTACCTGCACTGGCTCCATTTTGCTGGTATTTGTATTATGCTTTtgagttcctcaatgtttgttgttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6140612 261 +   6154872 ttgcctttcccagggtaacctacctcccttgccatatcgcctgacaggtgtgtcccctaataaaatgcctataactttaatcccatgatggaatttgctttttggagcatttggactaTAAAATCATTTTCATCTGCCCACTAGTGATCTCTTACTTATTCCAATGTGTAAA--ATCTTTTTGTTTATTCAAC---TTCTACCTGCACTGGCTCCATTTTGCTGGTATTTGTATTATGCTTTtgagttcctcaatgtttgttgttt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30476860 261 + 172585720 ttgcctttctcagggtaacctgtttccctctctatgtcttctgacaggtgtgccccat-ataaaatg-ttgtaactttaatcccatgatggaacttgctttttggagtatctggacaacaAAATCATTTTCATCTGCAAACCAGTGTACTCTTACTTATTACAATTTGTAAA--ATCCTTTTGTTTATTCCACTTCTTCTATCTGCATTGGCACCA-TTTGCTAGTATTTGTATTATGCTTTTGAGTTTGTCagtgttcgtggctt
i rheMac8.chr4             I 28 I 2
s macNem1.NW_012012100v1       83432 262 +   1495729 ttgcctttctcagggtaacctgtctccctcgctataccttctgacaggtgtgtcccct-ataaaatg-ctgtaactttaatctcatgatggaacttgctttttggagtatctggactaCAAAATCATTTTCAACTGCACACCAGTGTCCTCTTACTTATTCTAATTTGTAAA--ATCCTTTTGTTTATTCAAATTATTCTACCTGCATTGGCTCCATTTTGCTGGTATTTGTATTATGCTTTtgagtttgtcaatgttcgtggctt
i macNem1.NW_012012100v1   I 5 I 2
s cerAty1.NW_012002535v1      136540 261 -    863181 ttgcctttctcagggtaacctgtctcccttgctatatcttctgacaggtgtgtcccct-ataaaatg-ttgtaactttaatcccatgatggaacttgctttttggagtatctggactaCAAAATCATTTTCAGCTGCACACCAGTGTTCTCTTACTTATTACAATTTGTAAA--ATCCTTTTGTTTGTTCAACTTCTTCTATCTGCACTGGCACCA-TTTGCTGGTATTTGTATTATGCTTTTGAGTTTGTCagtgttcgtggctt
i cerAty1.NW_012002535v1   I 5 I 2
s chlSab2.chr17             29296664 262 -  71996105 ttgcctttctcagggtaacctgtctccctcgctataccttctgacaggtgtgtcccct-ataaaatg-ctgtaactttaatctcatgatagaacttgctttttggagtatctggactaCAAAATCATTTTCATCTGCACACCAGTGTCCTCTTACTTATTCTAATTTGTAAA--ATCTTTTTGTTTATTCAATTTATTCCATCTGCATTGGCTCCATTTTGCTGGTATTTGTATTATGCTTTtgagtttgtcaatgttcatggctt
i chlSab2.chr17            I 5 I 2
s manLeu1.NW_012101121v1      132365 261 +    273075 ttgcctttctcagggtaacctgtctcccttgctatatcttctgacaggtgtgtcccct-ataaaatg-ttgtaactttaatcccatgatggaacttgctttttggagtatctggactaCAAAATCATTTTCAGCTGCACACCAGTGTTCTCTTACTTATTACAATTTGTAAA--ATCCTTTTGTTTGTTCAACTTCTTCTATCTGCACTGGCACCA-TTTGCTGGTATTTGTATTATGCTTTTGAGTTTGTCagtgttcgtggctt
i manLeu1.NW_012101121v1   I 5 I 2
s colAng1.NW_012115577v1       33660 262 -   1829203 ttgtctttcccagggtaacctgcctccctcgcaatatcttctaacaggtgtgtcccct-aaaaaatg-ctgtaactttcatcccatgttggaacttggtttttggactatttgaactaCAAAATCATTTTCATCTGCACACCAGTGTCCTCTTACTTATTCCAATTTGTAAA--ATCCTTTTGTTTATTCAGCTTCTTCTATCTGCATTGGCACCATTTTGCTGGTATTTGTAATATGTTTTTGAGTTTGTCGatgtttgtgactt
i colAng1.NW_012115577v1   I 5 I 2
s calJac3.chr4              30292242 261 + 171630274 TTGCCTTTCCCAGGGTAACCGACCTTTCTCACCATATTGTCTGACAGGTGTGTCCCCTAATAAAATC-CTGTAACTTTAATCCAATGATGGCACTTGCTTTTTGGGGCATTTGGACTACAAAATTATTTTCATCTGTGCACCAGTGACCTC----TTATTCCAATTTGTAAAATATCCTCTTGTATATTCAACTTCTTCTACCTGCAGTGGCTCCATTTTGCTGGTATTTGTATTATGCTTTTGAGTTAGTTGATGtttgtttttt
i calJac3.chr4             C 0 I 366
s saiBol1.JH378341             67301 261 +    515838 ttgcctttcccagggtcacctacctccctcaccatgtcttctgacatgtgtgtcccctaataaaatg-ctgtaacttgaatctcattttggcatttgctttttcgagcatttggactaCAAAATCATTTTCATGTGCACACCAATGACCTCTTAGTTATTCCAATTTGTA----ATCCTTTTGTTTATTTAAATTTTTCTCCCTGCGGTGGCTCCATTCTGCTGGTATTTGTATTATGCTTTTGAGTTTGTCGatgttcgttgctt
i saiBol1.JH378341         C 0 I 2
s cebCap1.NW_016107755v1      462810 262 -   1771730 TTGCCTTTGCCAGAGTAACCTACCTTTCT-GCTGTATCATCTGACAGGTGTGTCCCCTAATAAAATG-CTATAACTATAATCCAATGGCAGCACTTGCTTTTTGGAGCATTTGGAGTACAAAATCATTTTCATCTGTGCACCAGTGACCTCTTACTAATTCCAATTCCTAAA--ATCCTCTTATTTATTCAACTTCTTCTACCTGCAGTGGCTGCATTTTGCTGGTATTTGTATTATCCTTTtgagttagttgatgtttgttgatt
i cebCap1.NW_016107755v1   C 0 I 2
s aotNan1.NW_018496904v1      179609 264 -    383796 ttgcctttcccaaggtaactgacctttctcactgtattgtctgacagatgtgtcccctaataaaATG-CTGTAACTTTAATCCAATGATGGCACTTGCTTTTTGGGGCATTTGGACTACAAAATCATTTTCATCTGTGGACCAGTGACCTCTTACTTGTTCC-ATTTGTAAAATATCCTCTTGTTTATTCAACTTCTTCTACCTGCAGTGGCTCCATTTTGCAGGTATTTGTATAATGCTTTTAAGTTAGTTCatgtttgttgatt
i aotNan1.NW_018496904v1   C 0 I 2
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17116845 22835 -  18854210 I
e macFas5.chr4             141029073   0 + 170955103 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=102338.000000
s hg38.chr6_GL000254v2_alt   1136670 14 +   4827813 aatcactaaatttg
s panTro5.chr6              30089536 14 + 175400573 aatcactaaatttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30320200 14 + 173848474 aatcactaaatttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6140873 14 +   6154872 aatcactaaatttg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30477123 14 + 172585720 agtcactaaatttg
i rheMac8.chr4             I 2 C 0
s macNem1.NW_012012100v1       83696 14 +   1495729 agtcactaaatttg
i macNem1.NW_012012100v1   I 2 C 0
s cerAty1.NW_012002535v1      136803 14 -    863181 agtcactaaattta
i cerAty1.NW_012002535v1   I 2 C 0
s chlSab2.chr17             29296928 14 -  71996105 agtcactaaatttg
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012101121v1      132628 14 +    273075 agtcactaaattta
i manLeu1.NW_012101121v1   I 2 C 0
s colAng1.NW_012115577v1       33924 14 -   1829203 agtcactaaatttg
i colAng1.NW_012115577v1   I 2 C 0
s calJac3.chr4              30292869 14 + 171630274 agtcacaaaatttg
i calJac3.chr4             I 366 C 0
s saiBol1.JH378341             67564 14 +    515838 agtcactaaatttg
i saiBol1.JH378341         I 2 C 0
s cebCap1.NW_016107755v1      463074 14 -   1771730 agtcacaaaacttg
i cebCap1.NW_016107755v1   I 2 C 0
s aotNan1.NW_018496904v1      179875 14 -    383796 agtcattaaatttg
i aotNan1.NW_018496904v1   I 2 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17116845 22835 -  18854210 I
e macFas5.chr4             141029073  0 + 170955103 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=782090.000000
s hg38.chr6_GL000254v2_alt   1136684 114 +   4827813 ggggtagtttgttacacagcaatggataactaatGAAGC-CCTCTTACATTTCCATTATTCTATAGAAGTTAACTACATCTC-TTTTATTTTCTCCT-----ATTTTGATAATATTAGCCA
s panTro5.chr6              30089550 114 + 175400573 ggggtagtttgttacacagcaatggataactaatGAAGC-CCTCTTACATTTGCATTATTCTATAGAAGTTAACTACATCTG-TTTTATTTTCTCCT-----ATTTTGATAATATTAGCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30320214 114 + 173848474 ggggtagtttgttacacagcaatggataactaatGAAGC-CCTCTTACATTTGCATTATTCTATAGAAGTTAACTACATCTG-TTTTATTTTCTCCT-----ATTTTGATAATATTAGCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6140887 114 +   6154872 ggggtagtttgttacacagcaatggataactaatGAAGC-CCTCTTACATTTGCATTATTCTATAGAAGTTAACTACATCTG-TTTTATTTTCTCCT-----ATTTTGATAATATTAGCCA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30477137 114 + 172585720 ggggtagtttgttacacagcaacagataactcatGAAGT-CCTCTTATTTGTCCATTATTCTATAGAGGTTAACTACACTTG-TTTTATTTCCTCCC-----ATTTTGATAATATTAGCCA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       83710 114 +   1495729 ggagtagtttgttacacagcaatggataactcatGAAGC-CCTCTTATATGTCCATTATTCTATAGAGGTTAACTACACCTG-TTTTATTTCCTCCC-----TTTTCGATAATATTAGCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      136817 113 -    863181 ggggtagtttgttacacagcaacagacaactcatGAAGC-CCTC-TATATGTCCATTATGCTATAGAGGTTAACTACACCTG-TTTTATTTCCTCCC-----ATTTTGATAATATTAGCCA
i cerAty1.NW_012002535v1   C 0 I 4368
s chlSab2.chr17             29296942 114 -  71996105 ggagtagtttgttacacagcaatggataactcatGAAGCACCCT-TATATGTCCATTATTCTATAGAGGTTAGCTACACCTG-TTTTATTTCCTCCC-----TTTTCGATAATATTAGCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      132642 113 +    273075 ggggtagtttgttacacagcaacagacaactcatGAAGC-CCTC-TATATGTCCATTATGCTATAGAGGTTAACTACACCTG-TTTTATTTCCTCCC-----ATTTTGATAATATTAGCCA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       33938 114 -   1829203 ggggtagtttgttacacagcaacgaataacTAATGGAGC-CCTCTTACATTTCCATTATTCTATAGAGGTTAATTACACCTG-TTTTATTTCCTCCC-----ATTTTGATAATATTAGCCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30292883 119 + 171630274 gggatagtttgttacacagcaaaggataactaatGAAGT-CCTCTTACATTTTCATCATTCTCTAGAGGTTATCCACACCTG-TTTTATTCCCCCCCCCCCAATTTGGATAATATTAGCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341             67578 111 +    515838 ggggtagtttgttacacagcaatggataactaatGAAGC-CCTCTCATATTTCCATGATTCTACAGAGGTTTACTACATCTG-TTTTATTTCTTCCT-----ATTT---TGATATTAGCTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      463088 118 -   1771730 gggatagtttgttacacagcaaaggataactaatTAAGA-CCTCTTACATTTCCATTATTCTGTACAGGTTATCCACATCTGTTTTTATTTCACCCCCTC--ATTTGAATAATATTAGCAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      179889 114 -    383796 gggatagtttgttacatggcaaaggataactaataAAGC-CCTCTTACATTTTCATTATTCTCTAGAGGTTAACCACATCTG-TTTTATTTCCCCCC-----ATTTGGATAATATTAGCAA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17139680  91 -  18854210 gaggtAGTTTGTTACACAAGTATAGA--------------C-------ATTTCTACTATTCCATAGGTATTATCTATATCTC----TATTTCCTTGC-----CTTTTGATAATGTTAGCTA
i otoGar3.GL873550         I 22835 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e macFas5.chr4             141029073   0 + 170955103 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=198681.000000
s hg38.chr6_GL000254v2_alt   1136798 32 +   4827813 CACATAGGGTTTCTAGTTTCTCAACACCTAtt
s panTro5.chr6              30089664 32 + 175400573 CACATAGGGTTTCTAGTTTCTCAACACctatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30320328 32 + 173848474 CACATAGGGTTTCTAGTTTCTCAACActtatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6141001 32 +   6154872 CACATAGGGTTTCTAGCTTCTCAACACTTATT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30477251 32 + 172585720 TATATAGGATTTCTAGTTTCTCAACAACTATT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       83824 32 +   1495729 TACATAGGATTTCTAGTTTCTCAACACCTAtt
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29297056 32 -  71996105 TACATAGGATTTCTGGTTTCTCAACACctatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      132755 32 +    273075 TACATAGGATTTCTAGTTTCTCAACACctatt
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       34052 32 -   1829203 TACATGGGATTTCTAGTTTCTCAACACCTATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30293002 32 + 171630274 TGCATGGGGTTTCTAGTTCCTCAAAGCCTATT
i calJac3.chr4             C 0 I 566
s saiBol1.JH378341             67689 32 +    515838 TACATAGAGTTTCTAGTTTCTCAATCCCTAGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      463206 32 -   1771730 TGCATGGGGTTTCTAGTTTCTCAAAGCctatt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      180003 32 -    383796 TGCATGGGGTTTCTAGTTCCTCAAAGCCTAtt
i aotNan1.NW_018496904v1   C 0 I 11
s otoGar3.GL873550          17139771 32 -  18854210 CACATGCTGTCTCCAAttcctctccccctttt
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macFas5.chr4             141029073  0 + 170955103 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=173208.000000
s hg38.chr6_GL000254v2_alt   1136830 31 +   4827813 cttttctttattttagtttct-tttctccttt-------
s panTro5.chr6              30089696 31 + 175400573 cttttctttattttagtttct-tttctccttt-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30320360 31 + 173848474 cttttctttattttagtttct-tttctccttt-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6141033 30 +   6154872 C-TTTCTTTATTTTAGTttct-tttctccttt-------
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30477283 31 + 172585720 CTTTTCTTTATTTTAGTTTCT-TCTCTCCTTT-------
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       83856 27 +   1495729 cttttc----ttttagtttct-tttctccttt-------
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29297088 27 -  71996105 cttttc----ttttagtttct-tttctccttt-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      132787 31 +    273075 cttttctttattttagtttct-tttctccttt-------
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       34084 31 -   1829203 CGTTTGTTTATTTTAGTTTCT-TTTCTCCTTT-------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30293600 31 + 171630274 tttttctttattttagtttct-tctctccttt-------
i calJac3.chr4             I 566 C 0
s saiBol1.JH378341             67721 30 +    515838 CTTGTCTATATTTTAGCGTGT-T-Tctccttt-------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      463238 31 -   1771730 cttttctttattttagtttct-tctcttcttt-------
i cebCap1.NW_016107755v1   C 0 N 0
s aotNan1.NW_018496904v1      180046 31 -    383796 tttttctttattttagtatct-tctctccttt-------
i aotNan1.NW_018496904v1   I 11 C 0
s otoGar3.GL873550          17139803 38 -  18854210 -cttcttttgttttagtttgtctttctccttccttcttt
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macFas5.chr4             141029073  0 + 170955103 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=-2694.000000
s hg38.chr6_GL000254v2_alt   1136861 1 +   4827813 -a
s panTro5.chr6              30089727 1 + 175400573 -g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30320391 1 + 173848474 -g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6141063 1 +   6154872 -g
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30477314 1 + 172585720 -G
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       83883 1 +   1495729 -g
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29297115 1 -  71996105 -g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      132818 1 +    273075 -c
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       34115 1 -   1829203 -G
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30293631 1 + 171630274 -g
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341             67751 1 +    515838 -g
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1      180077 1 -    383796 -g
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17139841 1 -  18854210 c-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macFas5.chr4             141029073 0 + 170955103 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=20603.000000
s hg38.chr6_GL000254v2_alt   1136862 8 +   4827813 ttccttcc
s panTro5.chr6              30089728 8 + 175400573 ttccttcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30320392 8 + 173848474 ttcctttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6141064 8 +   6154872 ttccttcc
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012012100v1       83884 8 +   1495729 ttccttcc
i macNem1.NW_012012100v1   C 0 C 0
s manLeu1.NW_012101121v1      132819 8 +    273075 ttctttcc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       34116 8 -   1829203 CTCCTTCC
i colAng1.NW_012115577v1   C 0 I 6
s calJac3.chr4              30293632 8 + 171630274 tttctttt
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1      180078 8 -    383796 tttgtttt
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17139842 8 -  18854210 ttctgtcc
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             67752 0 +    515838 C
e chlSab2.chr17             29297116 0 -  71996105 C
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macFas5.chr4             141029073 0 + 170955103 I
e rheMac8.chr4              30477315 0 + 172585720 C
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=-5838.000000
s hg38.chr6_GL000254v2_alt   1136870 3 +   4827813 ctt-
s panTro5.chr6              30089736 1 + 175400573 c---
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30320400 3 + 173848474 cct-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6141072 2 +   6154872 c-t-
i gorGor5.CYUI01015250v1   C 0 C 0
s macNem1.NW_012012100v1       83892 2 +   1495729 -ct-
i macNem1.NW_012012100v1   C 0 I 1
s manLeu1.NW_012101121v1      132827 2 +    273075 -ct-
i manLeu1.NW_012101121v1   C 0 I 1
s calJac3.chr4              30293640 2 + 171630274 -ct-
i calJac3.chr4             C 0 I 1
s aotNan1.NW_018496904v1      180086 2 -    383796 -ct-
i aotNan1.NW_018496904v1   C 0 I 1
s otoGar3.GL873550          17139850 3 -  18854210 -ctc
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             67752 0 +    515838 C
e colAng1.NW_012115577v1       34124 6 -   1829203 I
e chlSab2.chr17             29297116 0 -  71996105 C
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macFas5.chr4             141029073 0 + 170955103 I
e rheMac8.chr4              30477315 0 + 172585720 C
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=18341.000000
s hg38.chr6_GL000254v2_alt   1136873 16 +   4827813 tttttttttttttttt
s panTro5.chr6              30089737 12 + 175400573 ----tttttttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30320403 16 + 173848474 tttttttttttttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6141074 16 +   6154872 tttttttttttttttt
i gorGor5.CYUI01015250v1   C 0 C 0
s calJac3.chr4              30293643 16 + 171630274 tttctttcCTGTCTCT
i calJac3.chr4             I 1 I 483
s aotNan1.NW_018496904v1      180089 16 -    383796 tttctttttttttttt
i aotNan1.NW_018496904v1   I 1 I 5
s otoGar3.GL873550          17139853 16 -  18854210 catccctccttttttt
i otoGar3.GL873550         C 0 I 307
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             67752  0 +    515838 C
e colAng1.NW_012115577v1       34124  6 -   1829203 I
e manLeu1.NW_012101121v1      132829  1 +    273075 I
e chlSab2.chr17             29297116  0 -  71996105 C
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       83894  1 +   1495729 I
e macFas5.chr4             141029073  0 + 170955103 I
e rheMac8.chr4              30477315  0 + 172585720 C
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=210023.000000
s hg38.chr6_GL000254v2_alt   1136889 261 +   4827813 tgagatggagtctcactctc-ttgcccaggctaaagtgcagtggctcaatctcagctcactgcaagctctgcctcctgggttcatgccattctcctgattcagcttcccaagtagctgggactacaggcacctgccaccacgcccagctaatttttttgtattttcagtagagacggggtttcaccatgttagccaggaaagtctctatctcctgacctcatgatctgcctgcctcagcctcccaaagtgctgggattgcag
s panTro5.chr6              30089749 261 + 175400573 tgagacggagtctcactctc-tcgcttaggctaaagtgcagtggctcaatctcagctgactgaaagctctgcctcctgggttcatgccattctcctacctcagcttcccaagtagctgggactacaggcacctgccaccacgcccagctaatttttctgtatttttagtagagacggggtttcaccatgttagccaggaaggtctctatctcctgacctcatgatctgcctgcctcagcctcccaaagtgctgggattacag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30320419 261 + 173848474 gtagacggagtctcactctc-tcgcttaggctaaagtgcagtggctcaatctcagctgactgaaagctctgcctcctgggttcatgccattctcctacctcagcttcccaagtagctgggactacaggcacctgccaccacgcctagctaatttttctgtatttttagtagagacggggtttcaccatgttagccaggaaggtctctatctcctgacctcatgatctgcctgcctcagcctcccaaagtgctgggattacag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6141090 259 +   6154872 tgagacagagtctcactctc-tcgcttaggctaaagtgcagtggctcaatctcagctgactgcaagctctgcctcctgggttcatgccattctcctgcctcagcttcccaagtagctgggactacaggcacctgccaccacgcccagctaa--tttctgtatttttagtagagacggggtttcaccatgttagccaggaaggtctctatctcctgacctcatgatctgcctgcctcagcctcccaaagtgctgggattacag
i gorGor5.CYUI01015250v1   C 0 C 0
s aotNan1.NW_018496904v1      180110 261 -    383796 tgagacggagtttcgctcttgttacccaggctggagtgcaatggcgtgatctccgctcactgcaacctccgcctcctgggttcaggcaattctcctgcctcagcctcctgagtagctgggattacaggcacgcaccaccgtgcccagctaa-ttttttgtatttttagtagagacggggtttcaccatgttgaccaggatggtctcgatctcttaacctcgtgatccacccaccttggcctcccaaagtgctgggattacag
i aotNan1.NW_018496904v1   I 5 T 44574
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             67752   0 +    515838 C
e otoGar3.GL873550          17139869 307 -  18854210 I
e calJac3.chr4              30293659 483 + 171630274 I
e colAng1.NW_012115577v1       34124   6 -   1829203 I
e manLeu1.NW_012101121v1      132829   1 +    273075 I
e chlSab2.chr17             29297116   0 -  71996105 C
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       83894   1 +   1495729 I
e macFas5.chr4             141029073   0 + 170955103 I
e rheMac8.chr4              30477315   0 + 172585720 C
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=13548.000000
s hg38.chr6_GL000254v2_alt   1137150 24 +   4827813 gcatgagccaccacacctggcctc
s panTro5.chr6              30090010 24 + 175400573 acatgagccaccacacctggcctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30320680 24 + 173848474 acatgagccaccacacctggcctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6141349 24 +   6154872 acatgagccaccacacctggcctc
i gorGor5.CYUI01015250v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             67752  0 +    515838 C
e otoGar3.GL873550          17139869 307 -  18854210 I
e aotNan1.NW_018496904v1      180371 44574 -    383796 T
e calJac3.chr4              30293659 483 + 171630274 I
e colAng1.NW_012115577v1       34124  6 -   1829203 I
e manLeu1.NW_012101121v1      132829  1 +    273075 I
e chlSab2.chr17             29297116  0 -  71996105 C
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       83894  1 +   1495729 I
e macFas5.chr4             141029073  0 + 170955103 I
e rheMac8.chr4              30477315  0 + 172585720 C
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=11874.000000
s hg38.chr6_GL000254v2_alt   1137174 7 +   4827813 ttccttc
s panTro5.chr6              30090034 7 + 175400573 ttccttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30320704 7 + 173848474 ttccttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6141373 7 +   6154872 ttccttc
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30477315 7 + 172585720 TTCCTTC
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29297116 7 -  71996105 ttccttc
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341             67752 7 +    515838 ttccatt
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17139869 307 -  18854210 I
e aotNan1.NW_018496904v1      180371 44574 -    383796 T
e calJac3.chr4              30293659 483 + 171630274 I
e colAng1.NW_012115577v1       34124 6 -   1829203 I
e manLeu1.NW_012101121v1      132829 1 +    273075 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       83894 1 +   1495729 I
e macFas5.chr4             141029073 0 + 170955103 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=13752.000000
s hg38.chr6_GL000254v2_alt   1137181 4 +   4827813 cctt
s panTro5.chr6              30090041 4 + 175400573 cctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30320711 4 + 173848474 cctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6141380 4 +   6154872 cctt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30477322 4 + 172585720 CCTT
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29297123 4 -  71996105 cctt
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341             67759 4 +    515838 cctt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      617717 4 -   1771730 cctt
i cebCap1.NW_016107755v1   N 0 C 0
s aotNan1.NW_018496904v1      135797 4 -    383796 cctt
i aotNan1.NW_018496904v1   T 44574 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17139869 307 -  18854210 I
e calJac3.chr4              30293659 483 + 171630274 I
e colAng1.NW_012115577v1       34124 6 -   1829203 I
e manLeu1.NW_012101121v1      132829 1 +    273075 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       83894 1 +   1495729 I
e macFas5.chr4             141029073 0 + 170955103 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=59480.000000
s hg38.chr6_GL000254v2_alt   1137185 15 +   4827813 tctccttccttctaa
s panTro5.chr6              30090045 15 + 175400573 tctccttccttctag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30320715 15 + 173848474 tctccttccttctag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6141384 15 +   6154872 tctccttccttctag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30477326 15 + 172585720 TCTCCTTCCTTCTGT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       83895 15 +   1495729 tctccttccttctgt
i macNem1.NW_012012100v1   I 1 C 0
s chlSab2.chr17             29297127 15 -  71996105 tctCCCTCCTTCTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      132830 15 +    273075 tctccttccttctgt
i manLeu1.NW_012101121v1   I 1 C 0
s saiBol1.JH378341             67763 15 +    515838 tctcataccttctct
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      617721 15 -   1771730 tctccttccttctct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      135801 15 -    383796 tctccttccttctct
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17139869 307 -  18854210 I
e calJac3.chr4              30293659 483 + 171630274 I
e colAng1.NW_012115577v1       34124  6 -   1829203 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macFas5.chr4             141029073  0 + 170955103 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=759313.000000
s hg38.chr6_GL000254v2_alt   1137200 161 +   4827813 ccctccctccctctctttcttctctatttccattcaacctatcaccttccctccttcttgct-cccttt------cctt-------ccccttccccttccttcttttcttctttcactttttcctccattcctccttctttccctcccttcctcca---ttttttcctttttattATA
s panTro5.chr6              30090060 161 + 175400573 ccctccctccctctctttcttctctatttccattcaacctatcaccttccctccttcttgct-cccttt------cctt-------ccccttccccttccttcttttcttctttcactttttcctccattcctccttctttccctcccttcctcca---ttttttcctttttattATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30320730 161 + 173848474 ccctccctccctctctttcttctctatttccattcaacctatcaccttccctccttcttgct-cccttt------cctt-------ccccttccccttccttcttttcttctttcactttttcctccattcctccttctttccctcccttcctcca---ttttttcctttttattATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6141399 159 +   6154872 ccctccctccctctctttcttctctatttccattcaatctatcacctt-cctccttcttgct-cccttt------cctt-------ccccttccccttccttcttttcttctttcactttttcctccattcctccttctttccctcccttcctcca---ttttttcc-ttTTATTATA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30477341 162 + 172585720 CCCTCCCTCCCTCTTTTTCTTCTCTATTTCCACTCAACCTCTCACCCTCCCTCCTTCTCATTCCCCTTT------CCTT-------CCCTTTCCCCTTCCTTCTTTTCTTCTTTCACTTTTCCTTCCATTCCTCCTTCTTTCCCTCTGTTCCTCCA---TTTTTTCCTTTTTCTTATG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       83910 162 +   1495729 ccctccctccctctttttcttctctatttccattcaacctctcaccctccctccttcttattccccttt------cctt-------ccttttccccttccttcttttcttctttcacttttccttccattcctccttctttccctcccttcctcca---ttttttcctttttcttATG
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29297142 162 -  71996105 CCCTCCCTTCCTCTTTTTCTTCTGTATTTCCATTCAACCTCTCACCTTCCCTCCTTCTCACTCCCCTTT------CCTT-------CCCTTTCCCCTTCCTTCTTTTCTTCTTTCACGTTTCTTTCCATTCCTCCATCTTTCCCTCCCTTCTTCCA---TTTTTTCCTTTTTCTTATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      132845 163 +    273075 ccctccctccctctttttcttctctacttccattcaacctctcaccctccctccttctcactccccttt------cctt-------ccccttccccttccttctcttcttctttcacttttccttccattcctccttctttctctcccttcctcca--tttttttcctttttcttATG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       34130 168 -   1829203 CCCTCCATTCCTCTCTTTCTTCTCTATTTCAATTAAACCTCTCATcctccctccttccaactcccctttccttcccctt-------ccccttccccttccTTCTTTTCTTCTTTCACTTTTTCCTCCATTCCTCCTTCTTTCCCTCCCTTCCTCTG---TTTTTTCCTTTTTATTATG
i colAng1.NW_012115577v1   I 6 C 0
s saiBol1.JH378341             67778 167 +    515838 tcctccctcc--ctctttcttctctatttccattcaaactctcaccctccctccttcttgccccccTtt------tctttcctttttcccttcttcttcctttttttctt---tcagtctttcctctattcctctttctttACCTTTGTTTCCCCATTTTTTTTTGCCTTTTATTATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      617736 169 -   1771730 ttctccctccctctctttcttctctatctccattcaaactcgcaccctcccgccttctcgccccccttt------tctt--ccttttctcttcttttttctttttttcttccctccttctttcttctattcctccttctttccctccCTTTCCCCA-TTTCTTTTGCTTTTTGTTATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      135816 170 -    383796 tcctccctccctctctttcttctctatttccattcaaactcttaccctccctccttctcaccccctttt------ccttcccattttcccatcttcttcctttttttcttctttcactttttcctctattcctccttctttccctccCTTTCCCCA--TTTTTTTGCTTTTTATTATA
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17139869 307 -  18854210 I
e calJac3.chr4              30293659 483 + 171630274 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macFas5.chr4             141029073   0 + 170955103 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=1238139.000000
s hg38.chr6_GL000254v2_alt   1137361 237 +   4827813 AAATTTTCCTAAAATATAAAATAACCCTATGTGATTGGGCTGTAAGTAAGCATTTTCTGAATCTATATGTCAAAAGCATAATGTC-TTTTATATGAGAAACAAGTAAACAACAGGAAGTTATTAACA------GAAT-AAAAATGCTTGCTATAATTCTACCACCAAGACGGTGACTTTTAACACAATTC------CTTCAACTCAGTGTTTTCAGAACACATCATcaacatcaagtattacacatttatt
s panTro5.chr6              30090221 237 + 175400573 AAATTTTCCTAATATATAAAATAACCCTATGTGATTGGGCTGTAAGTAAGCATTTTCTGAATCTATATGTCAAAAGCATAATGTC-TTTTATATGAGAAACAAGTAAACAACAGGAAGTTATTAACA------GAAT-AAAAATGCTTGCTATAATTCTACCACCAAGACAGTGACTTTTAACACAATTC------CTTCAACTCAGTGTTTTCAGAACACATCATcaacatcaagtattacacatttatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30320891 237 + 173848474 AAATTTTCCTAATATATAAAATAACCCTATGTGATTGGGCTGTAAGTAAGCATTTTCTGAATCTATATGTCAAAAGCATAATGTC-TTTTATATGAGAAACAAGTAAACAACAGGAAGTTATTAACA------GAAT-AAAAATGCTTGCTATAATTCTACCACCAAGACAGTGACTTTTAACACAATTC------CTTCAACTCAGTGTTTTCAGAACACATCATcaacatcaagtattacacatttatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6141558 236 +   6154872 AAATTTTCCTAATATATAAAATAACCCTATGTGATTGGGCTGTAAGTAAGCATTTTCTGAATCTATATGTCAAAAGCATAAT-TC-TTTTATATGAGAAACAAGTAAACAACAGGAAGTTATTAACA------GAAT-AAAAATGCTTGCTATAATTCTACCACCAAGACAGTGACTTTTAACACAATTC------CTTCAACTCAGTGTTTTCAGAACACATCATcaacatcaagtattacacatttatt
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30477503 237 + 172585720 AAATTTTCCTAA-ATATAAAATAACCCTATGTGATTGTGCTATAAGTAAGCATTTTCTGAATCTATATGCCAAAAGTATAATGCCACGGTATATAAGAAACAAGTAAACAATAGGAAGTTATTAACAGAGTCTGAAT-GAAAATGCCTGCTGTAATTCTACTGCTAAGACAGTGGCTTTTAACTCAATTC------CTTCGACGCAGTATTTTGAGAACACCT------CATCAAGTAttacacatttatt
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       84072 237 +   1495729 AAATTTTCCTAA-ATATAAAATAACCCGGTGTGATTGTGCTATAAGTAAGCATTTTCTGAATCTATATGCCAAAAGTATAATGCCACAGTATATAAGAAACAAGTAAACAACAGGAAGTTATTAACAGAGTCTGAAT-GAAAATGTCTGCTGTAATTCTACTGCCAAGACAGTGACTTTTAACTCAATTC------CTTCGACGCGGTGTTTTCAGAACACAT------CATCAAGTATTACACATTTATT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29297304 236 -  71996105 AAATTTTCCTAA-ATATAACATAACCTTATGTGATTGTGCTATAAGTAAGCATTTTCTGAATCTATATGCCAAAAGCATAATGCCACGGTGTATAAGAAACAAGTAAACAACAGGAAGTTATTAACAGAGTCTGAAT-GAAAATGCCTGCTGTAATTCTACTGCCAAGACAGTGACGTTTAACTCACTTC------TTTCATTGCAGTGTTTTCGGAACACAT------CATCaattattacaca-ttatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      133008 237 +    273075 AAATTTTCCTAA-ATATAAAATAACCCTGTGTGATTGTGCTATAAGTAAGCATTTTCTGAATCTATATGCTAAAAGTATAATGCCACGGTATATAAGAAACAAGTAAACAACAGGAAGTTATTAACAGAGTCTGAAT-GAAAATGCCTGCTGTAATTCTACTGCCAAGACAGTGACTTTTAACTCAATTC------CTTCGACGCAGTATTTTCAGAACACAT------CATCAAGTAttacacatttatt
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       34298 244 -   1829203 AATTTTTTCTAACATATCAAATAACCCTATGTGATTGTGCTATAAGTAAGCATGTTCTGAATCTATATGTCAAAAGTATAATGCCACAGTATATAAGAAACAAGTAAACAACAGGAAGTTATTAACAGAATCTGAAT-AAAAATACCTGCTATAATTCTACCACCAACACAGTGGCTTTTAACTCAATTC------ATTCAATGCAGTGTTTTCAGAACACATCATTAACATCAAATATTGCACATTTATT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             67945 244 +    515838 AAATTTTCCTAACATATAAAACAAGCCTATTTGATTGTGCCATAAGTAAGCATTTTCTGAATCTATATTTCAAAACTACAATGCCATGGTATATGAGAAACAAGTAAACAACAGGAAGTTATTAACAGAGTCTGAAT-AAAAATGCCTGCTATAAACCTTCAGCCAATACACTGGCTTTTAACTCAATTC------CTTCAACTCAGTGTTTTCAGAACACATCATCAACATCAAGTATTACACATTTATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      617905 244 -   1771730 AAATTTTCCTAACATATAAAACAACCTTATTTGATTGTGCCATAAGTAAGGATTTTCTGAATCTATATTTCAAAACTGTAATGCCACAGTATATGAGAAACAAATAAACAACAGGAAGTTATTAACAGAGTCTGAAT-AAAAATGCATGCTATAAATCTGCAGCCAAGACACTGGCTTTTAACTCAATTC------CTTCAACTCAGTGTTTTCAGAACACACCATCAACATCAAGTATTACACATTTATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      135986 244 -    383796 AAATTTTTCTAACATATAAAACAACCCTATTTGATTGTGCCATAAATAAGCATTTTCTGAATCTATATTTCAAAACCGTAATGCCATGGTATATGAGAAACAAGTAAACAACAGGAAGTTAATAACAGAGTCTGAAT-AAAAATTCCTGCTATAAACCTGCAGCCAAGACACTGGCTTTTAACTCAATTC------CTTCAACTCAGTGTTTTCAGAACACATCATCAACATCAAGTATTGCTCATTTATT
i aotNan1.NW_018496904v1   C 0 I 813
s otoGar3.GL873550          17140176 244 -  18854210 AAAGATTCCTAATATATAAAATTACTCTATGTATTTATGCTGAAAGGAAGCATTATCTGGATGTATATAATAAAAGCATAATGC--TAGAATATGCAGAATA---AAATTTTTAAAAGTTTTTAATAGAGTCTGAGGAAAAAATCCCTG--ATCATTCTATAGCCAAAACATTGCCTTTTAACTCTTTACTCCTCATTTTCCCTGagtgttgtgagaacacatgagtaacctaaactcttacacattcctg
i otoGar3.GL873550         I 307 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e calJac3.chr4              30293659 483 + 171630274 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macFas5.chr4             141029073   0 + 170955103 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=58546.000000
s hg38.chr6_GL000254v2_alt   1137598 11 +   4827813 gtaaaagttta
s panTro5.chr6              30090458 11 + 175400573 gtaaaagttta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30321128 11 + 173848474 gtaaaagttta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6141794 11 +   6154872 gtaaaagttta
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30477740 11 + 172585720 gtaaaagttta
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       84309 11 +   1495729 GTAAAAGTTTA
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29297540 11 -  71996105 gtaaaagttta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      133245 11 +    273075 gtaaaagttta
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       34542 11 -   1829203 gtaaaagttta
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             68189 10 +    515838 -TAAAAGTTTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      618149 10 -   1771730 -TAAAAGTTTA
i cebCap1.NW_016107755v1   C 0 N 0
s otoGar3.GL873550          17140420 11 -  18854210 ataaaacttaa
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e aotNan1.NW_018496904v1      136230 813 -    383796 I
e calJac3.chr4              30293659 483 + 171630274 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macFas5.chr4             141029073  0 + 170955103 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=4952.000000
s hg38.chr6_GL000254v2_alt   1137609 2 +   4827813 ag
s panTro5.chr6              30090469 2 + 175400573 ag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30321139 2 + 173848474 ag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6141805 2 +   6154872 ag
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30477751 2 + 172585720 aa
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       84320 2 +   1495729 AG
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29297551 2 -  71996105 ag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      133256 2 +    273075 aa
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       34553 2 -   1829203 ag
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             68199 2 +    515838 gg
i saiBol1.JH378341         C 0 I 784
s otoGar3.GL873550          17140431 2 -  18854210 ac
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e aotNan1.NW_018496904v1      136230 813 -    383796 I
e calJac3.chr4              30293659 483 + 171630274 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macFas5.chr4             141029073 0 + 170955103 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=269172.000000
s hg38.chr6_GL000254v2_alt   1137611 81 +   4827813 tagccacaattactttggaaatcatattatcattatctagtatggttaaagtccatacaatgtatcatgcaaccaacccat
s panTro5.chr6              30090471 81 + 175400573 tagccaaaatcactttggaaatcatattatcattatctagtatggttaaagtccatacaatgtatcatgcaaccaacccat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30321141 81 + 173848474 tagccaaaatcactttggaaatcatattatcattatctagtatggttaaagtccatacaatgtatcatgcaaccaacccat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6141807 81 +   6154872 tagccacaatcactttggaaatcatattatcattatctagtatggttaaagtccatacaatgtatcatgcaaccaacccat
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30477753 81 + 172585720 tagccacaatcactttggaaatcatattatcattatctagtatgattaaagtccgtacaacgtatcatccaaccaacccat
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       84322 81 +   1495729 TAGCCACAGTCACTTTGGAAATCATATTATCATTATCTAGTATGATTAAAGTCCATACAACGTATCATCCAACCAACCCAT
i macNem1.NW_012012100v1   C 0 M 2380
s chlSab2.chr17             29297553 81 -  71996105 tagccacaatcactttggaaatcatattatcattatctagtatgattaaagtccatacaacatatcatccaaccaacccat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      133258 81 +    273075 tagccacaatcactttggaaatcatattatcattatctagtatgattaaagtccatacaacgtatcatttaaccaacccat
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       34555 79 -   1829203 tagccacaatcac-ttggaaatcatattatcattatctagtatggttaaa-tccatacaacctatgatccaaccaacccat
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550          17140433 80 -  18854210 -tggtacaagcatcttggaaataaaattagccttaactagtacagttcaagtactcacaccatataatcccaccatcctac
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             68201 784 +    515838 I
e aotNan1.NW_018496904v1      136230 813 -    383796 I
e calJac3.chr4              30293659 483 + 171630274 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macFas5.chr4             141029073  0 + 170955103 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=691111.000000
s hg38.chr6_GL000254v2_alt   1137692 279 +   4827813 tcctaatcatccactctgggggctttggggctttcttgcctatgtgc----------acaggagacatgcacactaatatttatggcaaaaactggaatcggccacatgtacatcaataggaaaccggtgaaattgtggtaaaacgat---atgtaagccttcagc-gtaaaaatgaatgaatgacagcctcccacaccacagataa--ctcctacacataatgtgtatcatgggaaaatacatgcagtaggaatttgctgtacaggaagcttaaaaaccagcaaaactaactga
s panTro5.chr6              30090552 278 + 175400573 tcctaatcatccactctgggggttttggggctttcttgcctatgtgc----------acaggagacatgcacactaatatttatggcaaaaactgggatcagccacatgtacatcaataggaaactggtgaaattgtggtaaaacgat---atgtaagccttcagcagtaaaaatgaatgaatgacagcctcccacaccacagataa--ctcctacacataatgtacatcatgggaaaatacatgcagtaggaatttgctgtacaggaagcttaaaaaccagcaaaactaac--a
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30321222 278 + 173848474 tcctaatcatccactctgggggttttggggctttcttgcctatgtgc----------acaggagacatgcacactaatatttatggcaaaaactgggatcagccacatgtacatcaataggaaactggtgaaattgtggtaaaacgat---atgtaagccttcagcagtaaaaatgaatgaatgacagcctcccacaccacagataa--ctcctacacataatgtacatcatgggaaaatacatgcagtaggaatttgctgtacaggaagcttaaaaaccagcaaaactaac--a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6141888 277 +   6154872 tcctaatcatccactct-ggggctttggggctttcttgcctatgtgc----------acaggagacatgcacactaatatttatggcaaaaaactggatcagccacatgtacatcaataggaaactggtgaaattgtggtaaaatgat---atgtaagccttcagcagtaaaaatgaatgaatgacagcctcccacaccacagataa--ctcctacacataatgcgcatcatgggaaaatacatgcagtaggaatttgctgtacaggaagcttaaaaaccagcaaaactaac--a
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30477834 274 + 172585720 ccctaatcatccactctggggg--------ctttcttacctatgtgc----------acaggagacaggcacattaacgtatatggcaaatagtggaatcagccacatatacatcaataggaaagtagtgaaattgtggtataaccataaaatgtaaaccttcagcagtaaaaatgaatgaa-gacagtctcccacaccacagataa--ctcctatatgtaatgtgcatcatgggaaaataaatgcagtaggaatttgctgtgcaggaagcttaaaaaccagcaaaactaactga
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29297634 276 -  71996105 tccgaaccatccactctggggg-------actttcttacctatgtgc----------acaggagacatgcacactaaggtgtatggcaaaaagtggaatcagccacatatacatcaataggaaagtagtgaaattgtggtataaccataaaatgtaaaccttcagcagtaaaaatgagtgaatgacagtctcccgcaccacaaataa--ctcctatatgtaatgtgcatcatggaagaataaatgcagtaggaatttgctgtataggaggcttaaaaaccagcaaaactaactga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      133339 275 +    273075 tcctaatcatccactctggggg-------gctttcttacctatgtgc----------acaggagacaggcacactaatgtatatggcaaaaagtggaatcagccacatatacatcaataggaaagtagtgaaattgtggtataaccataaaatgtaaaccttcagcagtaaaaatgaatgaatgacagtctcccgcaccacaaataa--ctcctatatgtaacgtgcatcatgggaaaataaatgcagt-ggaatttgctttacaagaagcttaaaaaccagcaaaactaactga
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       34634 276 -   1829203 tcctaatcatccactctcgggg-------gctttcttacctatgtgc----------acaggagacatgcacactaatgtttatggcaaaaaccagaatcagccacatatacatcaataggaaagtagtgaaattgtggtataaccataaaatgtaaaccttcagcagtaaaaatgaatgaatgacagtctcccgcaccacaggtaa--ctcttatacgtaatgtgcatcataggaaaataaatgcagtaggaatttgctgtacaggaaacttaaaaaccagcaaaactaactga
i colAng1.NW_012115577v1   C 0 I 84
s otoGar3.GL873550          17140513 278 -  18854210 tcctgac---acattcttgggg-------acctccttacctatgtgccctgacatgtacaggagacatgtatactaatgttcatggaaaaaactggaatcaaccatatatacaataacagaaaggtagcaaaattgtcatggaattatagaatgtaaaacttcagtagtaaaaatgaat----aacagcctcgcacatcagagataactctcctacacataGGGTATGCCACAAAACAAAACATGGAGGATGAGTGCAGTGTATAGGAAATTTACAAACAAGAAAAACTAAT---
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             68201 784 +    515838 I
e aotNan1.NW_018496904v1      136230 813 -    383796 I
e calJac3.chr4              30293659 483 + 171630274 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=24257.000000
s hg38.chr6_GL000254v2_alt   1137971 13 +   4827813 ggtttgttttggg
s panTro5.chr6              30090830 13 + 175400573 ggtttgttttggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30321500 13 + 173848474 ggtttgttttggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6142165 13 +   6154872 ggttttttttggg
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30478108 13 + 172585720 tatttggtttggg
i rheMac8.chr4             C 0 I 71
s chlSab2.chr17             29297910 13 -  71996105 tatttggtttggg
i chlSab2.chr17            C 0 I 109
s manLeu1.NW_012101121v1      133614 13 +    273075 tatttggtttggg
i manLeu1.NW_012101121v1   C 0 I 71
s otoGar3.GL873550          17140791 12 -  18854210 -ATTTGGTTTGGG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             68201 784 +    515838 I
e aotNan1.NW_018496904v1      136230 813 -    383796 I
e calJac3.chr4              30293659 483 + 171630274 I
e colAng1.NW_012115577v1       34910 84 -   1829203 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=-782.000000
s hg38.chr6_GL000254v2_alt   1137984 42 +   4827813 ----gagata-----tatatatatatatatatatatatatatagatataga
s panTro5.chr6              30090843 33 + 175400573 ----gagata-----tatatatgtgTAtgtgtgtgtgtgtgt---------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30321513 33 + 173848474 ----gagata-----tatatatgtgtAtgtgtgtgtgtgtgt---------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6142178  6 +   6154872 ----gagata-----------------------------------------
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873550          17140803 41 -  18854210 GATAAAGACACTTACTATAAAAATCTTTAGAGAAATGAAGA----------
i otoGar3.GL873550         C 0 I 12
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             68201 784 +    515838 I
e aotNan1.NW_018496904v1      136230 813 -    383796 I
e calJac3.chr4              30293659 483 + 171630274 I
e colAng1.NW_012115577v1       34910 84 -   1829203 I
e manLeu1.NW_012101121v1      133627 71 +    273075 I
e chlSab2.chr17             29297923 109 -  71996105 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I
e rheMac8.chr4              30478121 71 + 172585720 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T

a score=968.000000
s hg38.chr6_GL000254v2_alt   1138026 35 +   4827813 tatagatatagatatagatatagatatagatatag
s panTro5.chr6              30090876 24 + 175400573 -----------gtgtgtgtatatatatatatatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30321546 16 + 173848474 -----------gtgt--------ACatatatatat
i panPan2.chr6             C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             68201 784 +    515838 I
e otoGar3.GL873550          17140844 12 -  18854210 I
e aotNan1.NW_018496904v1      136230 813 -    383796 I
e calJac3.chr4              30293659 483 + 171630274 I
e colAng1.NW_012115577v1       34910 84 -   1829203 I
e manLeu1.NW_012101121v1      133627 71 +    273075 I
e chlSab2.chr17             29297923 109 -  71996105 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I
e rheMac8.chr4              30478121 71 + 172585720 I
e nomLeu3.chr1a             74777515 62486 + 122973662 T
e gorGor5.CYUI01015250v1     6142184  0 +   6154872 C

a score=52849.000000
s hg38.chr6_GL000254v2_alt   1138061 80 +   4827813 atatatatatataatatacacttattgcacaaatctttgaaggaatacaaaggaatacgtatcagaagactcaggatgga
s panTro5.chr6              30090900 77 + 175400573 atatatatat---atatataCTTATTGCACAAATCTTTGAAGGAATACAAAGGAATATGTATCAGAAGACTCAGGATGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30321562 77 + 173848474 atatatatat---atatataCTTATTGCACAAATCTTCAAAGGAATACAAAGGAATACGTATCAGAAGACTCAGGATGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6142184 71 +   6154872 ------atat---atatatacttattgcacaaatctttgaaggaatacaaaggaatacgtatcagaagactcaggatggA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74715029 72 + 122973662 ----atatat---atatatacttattgcaacaatcattaaagaaatacaaaggaataataatca-caggttcaggttgga
i nomLeu3.chr1a            T 62486 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             68201 784 +    515838 I
e otoGar3.GL873550          17140844 12 -  18854210 I
e aotNan1.NW_018496904v1      136230 813 -    383796 I
e calJac3.chr4              30293659 483 + 171630274 I
e colAng1.NW_012115577v1       34910 84 -   1829203 I
e manLeu1.NW_012101121v1      133627 71 +    273075 I
e chlSab2.chr17             29297923 109 -  71996105 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I
e rheMac8.chr4              30478121 71 + 172585720 I

a score=6438.000000
s hg38.chr6_GL000254v2_alt   1138141 11 +   4827813 gtctcctgccg
s panTro5.chr6              30090977 11 + 175400573 GTCTCCtgccg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30321639 11 + 173848474 GTCTCCtgccg
i panPan2.chr6             C 0 I 5660
s gorGor5.CYUI01015250v1     6142255 11 +   6154872 GTCTCCtgccg
i gorGor5.CYUI01015250v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             68201 784 +    515838 I
e otoGar3.GL873550          17140844 12 -  18854210 I
e aotNan1.NW_018496904v1      136230 813 -    383796 I
e calJac3.chr4              30293659 483 + 171630274 I
e colAng1.NW_012115577v1       34910 84 -   1829203 I
e manLeu1.NW_012101121v1      133627 71 +    273075 I
e chlSab2.chr17             29297923 109 -  71996105 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I
e rheMac8.chr4              30478121 71 + 172585720 I
e nomLeu3.chr1a             74715101  0 + 122973662 C

a score=31069.000000
s hg38.chr6_GL000254v2_alt   1138152 63 +   4827813 agaccagctcggtcaggaagaccctaacccagtggtgctagaggacttaaagacacacacaca
s panTro5.chr6              30090988 62 + 175400573 agaccagct-ggtcagggagaccctaacccagtggtgctagaggaattaaagacacacacaca
i panTro5.chr6             C 0 I 5648
s panPan2.chr6              30327310 63 + 173848474 agaccagctcagtcagcaagaccctaacccagtggtgctagaggaattaaagacacacacaca
i panPan2.chr6             I 5660 C 0
s gorGor5.CYUI01015250v1     6142266 62 +   6154872 agaccagct-ggtcagggagaccctaacccagtggtgctacaggaattaaagacacacacaca
i gorGor5.CYUI01015250v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             68201 784 +    515838 I
e otoGar3.GL873550          17140844 12 -  18854210 I
e aotNan1.NW_018496904v1      136230 813 -    383796 I
e calJac3.chr4              30293659 483 + 171630274 I
e colAng1.NW_012115577v1       34910 84 -   1829203 I
e manLeu1.NW_012101121v1      133627 71 +    273075 I
e chlSab2.chr17             29297923 109 -  71996105 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I
e rheMac8.chr4              30478121 71 + 172585720 I
e nomLeu3.chr1a             74715101  0 + 122973662 C

a score=21927.000000
s hg38.chr6_GL000254v2_alt   1138215 39 +   4827813 gaaatatagaggtgtgaagtgggaaatcgggggtctcac
s panTro5.chr6              30096698 39 + 175400573 gaaatatagaggtgtgaagtgggaaatcgggggtctcac
i panTro5.chr6             I 5648 C 0
s panPan2.chr6              30327373 39 + 173848474 gaaatatagaggtgtgaagtgggaaatcgggggtctcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6142328 39 +   6154872 gaaatatagaggtgtgaagtgggaaatcaggggtctcac
i gorGor5.CYUI01015250v1   C 0 I 5657
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             68201 784 +    515838 I
e otoGar3.GL873550          17140844 12 -  18854210 I
e aotNan1.NW_018496904v1      136230 813 -    383796 I
e calJac3.chr4              30293659 483 + 171630274 I
e colAng1.NW_012115577v1       34910 84 -   1829203 I
e manLeu1.NW_012101121v1      133627 71 +    273075 I
e chlSab2.chr17             29297923 109 -  71996105 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I
e rheMac8.chr4              30478121 71 + 172585720 I
e nomLeu3.chr1a             74715101  0 + 122973662 C

a score=207927.000000
s hg38.chr6_GL000254v2_alt   1138254 406 +   4827813 agtcttcagagctgagagccccaaacagatatttacccacatatttattaacagcaaaccggtcattagtgttgtttctataggtattaaattaactaaaagtatcccttataggaagcaaagggatgggctgaattaaaggaataggttgggctagttaactgcagcaggaacacacccttaagacacagatcgctcatgctattgtttgtggcttaagaatgcctttaagcgg-ttttccgccctgggcaggccaggtgttcctttccctcattcttgtaaacctgcaaccttccagcttggacattagggcca-ttatgaacatgttacggtgctgcagagattttgtttatggccagtcttggggccagtttatggccagatttt-gggggacttgctcccaacg
s panTro5.chr6              30096737 406 + 175400573 agtcttcagagctgagagccccaaacagatatttacccacatatttattaacagcaaaccagtcattagcattgtttctatagatattaaattaactaaaagtatcccttatgcgaaacaaagggatgggccgaattaaaggaataggttgggctggttaactgcagctggaacacacccttaagacacagatcgctcatgctattgtttgtggcttaagaatgcctttaagtgg-ttttctgccctgggcaggccaggtgttccttcccctcattctcgtaaacccgcaaccttccagcttggacgttagggcca-ttatgaacatgttacagtgctggagagattttgtttatggccagtcttggggccagtttatggccagatttt-gggggacttgctcccaaTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30327412 406 + 173848474 agccttcagacctgagagccccgaacagatatttacccacatatttattaacagtaaaccggtcattagcattgtttctatagatattaaattaactaaaagtatcccttatgggaaacaaagggatgggccgaattaaaggaataggttgggctagttaactgcagcaggaacacacccttaagatacagatcgctcatgctattgtttgtggcttaagaatgtctttaagtgg-ttttccgccctgggcaggccaggtgttccttgccctcattctcgtaaacccacaaccttccagcttggacgttagggcca-ttatgtacgtgttacggtgcagcagagactttgtttatggccagtcttggggccagtttatggccagatttt-gggggacttgctcccaaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6148024 407 +   6154872 agtcttcagagctgagagccccaaacagatatttacccacatatttattaacagcaaaccagtcattagcattgtttctatagatattaaattaactaaaagtatcccttatgcaaaacaaagggatgggccaaattaaaggaataggttgggctagttaacggcagctggaacacacccttaagacacagattgctcatgctattgtttgtggcttaagaatgcctttaagtggtttttccgccctgggcaggccaggtgttccttgccctcattctcgtaaacccgcaaccttccagc-tggacgttagggccatttatgaacatgttacagtgctgcagagattttgtttatggccagtcttgggg-cagtttatggccagattttggggggacttgctcccaacG
i gorGor5.CYUI01015250v1   I 5657 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             68201 784 +    515838 I
e otoGar3.GL873550          17140844  12 -  18854210 I
e aotNan1.NW_018496904v1      136230 813 -    383796 I
e calJac3.chr4              30293659 483 + 171630274 I
e colAng1.NW_012115577v1       34910  84 -   1829203 I
e manLeu1.NW_012101121v1      133627  71 +    273075 I
e chlSab2.chr17             29297923 109 -  71996105 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I
e rheMac8.chr4              30478121  71 + 172585720 I
e nomLeu3.chr1a             74715101   0 + 122973662 C

a score=9285.000000
s hg38.chr6_GL000254v2_alt   1138660 2 +   4827813 gt
s panTro5.chr6              30097143 2 + 175400573 GT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30327818 2 + 173848474 GT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6148431 2 +   6154872 GT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74715101 2 + 122973662 gc
i nomLeu3.chr1a            C 0 I 99
s rheMac8.chr4              30478192 2 + 172585720 gt
i rheMac8.chr4             I 71 C 0
s chlSab2.chr17             29298032 2 -  71996105 gt
i chlSab2.chr17            I 109 C 0
s manLeu1.NW_012101121v1      133698 2 +    273075 gt
i manLeu1.NW_012101121v1   I 71 C 0
s colAng1.NW_012115577v1       34994 2 -   1829203 gt
i colAng1.NW_012115577v1   I 84 C 0
s calJac3.chr4              30294142 2 + 171630274 gt
i calJac3.chr4             I 483 C 0
s saiBol1.JH378341             68985 2 +    515838 gt
i saiBol1.JH378341         I 784 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17140844 12 -  18854210 I
e aotNan1.NW_018496904v1      136230 813 -    383796 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073 0 + 170955103 I

a score=38129.000000
s hg38.chr6_GL000254v2_alt   1138662 15 +   4827813 ctccttctagggg--gT
s panTro5.chr6              30097145 15 + 175400573 CTCCTTCTAGGGG--GT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30327820 15 + 173848474 CTCCTTCTAGGGG--GT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6148433 15 +   6154872 CTCCTTCTAGGGG--GT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30478194 16 + 172585720 ctccttct-ggggaagt
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29298034 17 -  71996105 ctccttgtaggggaagT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      133700 16 +    273075 ctccttct-ggggaagt
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       34996 17 -   1829203 ctccttctgggggATGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30294144 17 + 171630274 ctccttctgggggatgg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341             68987 17 +    515838 ctccttctgagggatgg
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17140844 12 -  18854210 I
e aotNan1.NW_018496904v1      136230 813 -    383796 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I
e nomLeu3.chr1a             74715103 99 + 122973662 I

a score=7310.000000
s hg38.chr6_GL000254v2_alt   1138677 3 +   4827813 GAC
s panTro5.chr6              30097160 3 + 175400573 GAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30327835 3 + 173848474 GAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6148448 3 +   6154872 GAC
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30478210 3 + 172585720 gaA
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29298051 3 -  71996105 GAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      133716 3 +    273075 gaA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       35013 3 -   1829203 GAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30294161 3 + 171630274 TAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341             69004 3 +    515838 gaA
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550          17140856 3 -  18854210 GAC
i otoGar3.GL873550         I 12 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e aotNan1.NW_018496904v1      136230 813 -    383796 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073 0 + 170955103 I
e nomLeu3.chr1a             74715103 99 + 122973662 I

a score=25596.000000
s hg38.chr6_GL000254v2_alt   1138680 5 +   4827813 TGGGT
s panTro5.chr6              30097163 5 + 175400573 TGGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30327838 5 + 173848474 TGGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6148451 4 +   6154872 T-GGT
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30478213 5 + 172585720 TGGGC
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29298054 5 -  71996105 TGGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      133719 5 +    273075 TGGGC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       35016 5 -   1829203 TGGAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30294164 5 + 171630274 TGGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341             69007 5 +    515838 TGGGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      463686 5 -   1771730 TGGGC
i cebCap1.NW_016107755v1   N 0 C 0
s aotNan1.NW_018496904v1      137043 5 -    383796 TGGGC
i aotNan1.NW_018496904v1   I 813 I 43931
s otoGar3.GL873550          17140859 5 -  18854210 TGGGC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073 0 + 170955103 I
e nomLeu3.chr1a             74715103 99 + 122973662 I

a score=388859.000000
s hg38.chr6_GL000254v2_alt   1138685 73 +   4827813 AGCAGCCCAGGGTAGCTTTACAGGTT-TGTGTTTTACACCAGCGCTGGGCACCCTCGTAGATACTTGATTATAA
s panTro5.chr6              30097168 73 + 175400573 AGCAGCCCAGGGTAGCTTTACAGATT-TGTGTTTTACACCAGTGCTGGGCACCCTGGTAGATACTTGATTATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30327843 73 + 173848474 AGCAGCCCAGGGTAGCTTTACAGGTT-TGTGTTTTACACCAGTGCTGGGCACCCTGGTAGATACTTGATTATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6148455 73 +   6154872 AGCAGCCCAGGGTAGCTTTACAGGTT-TGTGTTTTACACCAGTGCTGGACACCCTGGTAGATACTTGATTATAA
i gorGor5.CYUI01015250v1   C 0 C 0
s rheMac8.chr4              30478218 74 + 172585720 AGCAGCCCGGGGGAGCTTTACAGGTTTGGTGTTTTACACCAGTGCTGGGCACCCTGCTAGTTACTTGATTGTAG
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29298059 74 -  71996105 AGCAGCCCAGGAGAGCTTTACAGGTTCTGTGTTTTACACCAGTGCTGGGCACCCTGGTAGTTACTTGATTGTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      133724 74 +    273075 AGCAGCCCAGGGGAGCTTTACAGGTTCTGTGTTTTACACCAGTACTGGGCACCCTGCTAGTTACTTGATTGTAA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       35021 74 -   1829203 AGCGGCCCAGGATAGATTTACAGGTTCTGTGTTTTACACCACTGCTGGGCACCCTGGTAGTTACTTGATCATAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30294169 73 + 171630274 AGCAG-CCAGGGTAGCTTTACAGATTCTGTGTTTTACCCCAGTTCTGGGCACCCTGATAGTTAATTGATTATAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341             69012 74 +    515838 AGCAGCCCGGGGTAGCTTTACAGATTCTGTGTTTTACAACAGTGCTGGGCACCCTGGTAGTTACTTGGTTATAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      463691 67 -   1771730 AGCAGCCCAGGGTAGTTTTACAGGTTCTGTGTTTTACTCCAGTTCTGGGCACCTTGATAGT-------TTATAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      180979 74 -    383796 AGCAGCCCAGGGTAGCTTTAGAGGTTCTGTGTTTTACCCCAGTTCTGGGCACCCTGATAGTTAGTTGATTATAA
i aotNan1.NW_018496904v1   I 43931 C 0
s otoGar3.GL873550          17140864 74 -  18854210 AGCAGCCCATGGTGGCTTCATAGGTTCTTCTCCTTATGCCAGTGGCAGGTGCCCCAGTGCTCACTTGATCATAA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I
e nomLeu3.chr1a             74715103 99 + 122973662 I

a score=2557576.000000
s hg38.chr6_GL000254v2_alt   1138758 408 +   4827813 TTCCTTAAACAGAGTTTTCCAAATTAAAATATACCTGtt--ttttatagaaatgaaaaagaaaagaatttcaaagttcattgcaaagattcttaacaagaactacttacattggaagaaaaccacagagaattgtaaggagccatgtgacagagaggaccaggatgccatgaaaatggcattggctacaaataggtcatttgatccttggctccctggcatctctctagATTTTCAATGATACAatgttcaatc-tgctgtgcaagataatttcatcttccaaa-gatttgatgt-----tacattttaccacacattaaactgaaataaacttttacag-attggaaatgcacatcattgatcaaaataaatgaaacatgaaaagagta---gggaggaatacccagtgatggaatagca
s panTro5.chr6              30097241 408 + 175400573 TTCCCTAAACAGAGTTTTCCAAATTAAAATATACCTGtt--tttaatagaaatgaaaaagaaaaaaatttcaaagttcattgcaaagattcttaacaagaactacttacattggaagaaaaccacagagaattgtaaggagccatgtgacagagaggaccaggatgccatgaaaatggccttggctacaaataggtcatttgatccttgtctccctggcatctctctagattttcaatgatacaatgttcaatc-tgctgtgcaagataatttcatgttgcaaa-gatttgatgt-----tacattttaccacacattaaactgaaataaacttttacag-attggaaatgcacatcattgatcaaaataaatgaaacatgaaaagagta---ggaaggaatacccactgatggaatagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30327916 407 + 173848474 TTCCTTAAACAGAGTTTTCCAAATTAAAATATACCTGTT--TTT-ATAgaaatgaaaaagaaaagaatttcaaagttcattgcaaagattcttaacaagaactacttacactggaagaaaaccacagagaattgtaaggagccatgtgacagagaggaccaggatgccatgaaaacggccttggctacaaataggtcatttgatccttggctccctggcatctctctagattttcaatgatacaatgttcaatc-tgctgtgcaagataatttcatcttgcaaa-gatttgatgt-----tacattttaccacacattaaactgaaataaacttttacag-attggaaatgcacatcattgatcaaaataaatgaaacatgaaaagagta---ggaaggaatacccagtgatggaatagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6148528 408 +   6154872 TTCCTTAAACAGAGTTTTCCAAATTAAAATATACCTGtt--tttcatagaaatgaaaaagaaaaaaatttcaaagttcattgcaaagattcttaacaagaactacttacattggaagaaaaccacagagaattgtaaggagccatgtgacagagaggaccaggatgccatgaaaatggccttggctacaaataggtcatttgatccttggctccctggcatctctctagattttcaatgatacaatgttcaatc-tgctgtgcaagataatttcatcttgcaaa-gatttgatgt-----tacattttaccacacattaaactgaaataaacttttacag-attggaaatgcacatcattgatcaaaataaatgaaacatgaaaagagta---ggaaggaatacccactgatggaatagca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74715202 384 + 122973662 TTCCTC--ACAGAGTTTTCCAAATGAAACTATACCTGTT-------------------------GaattccaaggttcatttcaaggatccttaacaagaactacttacattggaagaaaaccacagagaattgtaaggacccatgtgacagagaggaccagggtgccatgaaaatggccttggctaaaaataggtcatttgatccttggctcactggcatctctctagATTTTCAATGATACAatgttcaatc-tgctgtgtaaggtaattccatcttgcaaaggatttgatgt-----tacattttaccacccatacaactgaattaaacttttacag-attggaaatgcacatcattgatcaaaacaaatgaaacaagaaaagagta---ggaaggaatacccagtgatggaatagca
i nomLeu3.chr1a            I 99 C 0
s rheMac8.chr4              30478292 401 + 172585720 TTCC-TAAATAGAGTTTTCCAAATTAAAGTATACCTGGT--TTTTATAgaaatgaaagagaaaagaatttcaaaattcactacaagaatccttaacaagaactacttacatttgaagaaaaccacacagaatcat--------acgtgacagagaggaccaggatgccatgaaaatggccttggctacaaataggtcatttaacccttggctcactggcatctctctaggttttcaattatacaatgttcaatc-tgCTGTACAAGGTAATTCCatcttgcaaaggatctgatgt-----tacattttaccacacatgaaactgaattaaacttttacagaattgaaaatgcacatcattgatcaaaacaaatgaaacaagaaaagagta---ggaaggaatatccagtgatggaatagca
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29298133 409 -  71996105 TTCC-TAAACAGAGTTTTCCAAATTAAAATATACCTGTT--TTTTATAGAAATGAAAGAGAAAAGAATTTCAAAGTTCACTACAAGGATCCTTAACCAGAACTACTTACATTTGAAGAAAACCACAGAGAACTGTAAGGAGCCATGTGACCGAGAGGACCAGGATGCCATGAAAATGGCCTTGGCTACAAATAGGCCATTTGATCCTTGGCTCACTGGCATCTCTCTAGATTTTCAATTATACAatgttcaatt-tgctgtgcaaggtaattcagtcttgcaaaggatttgatgt-----tacaatttaccacatataaaactgaattaaacttttacagaattggaaatgcacatcattgatcaaaacaaatgaaacaagcaaagagta---ggaaggaatatccagtgatggaatagca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      133798 409 +    273075 TTCC-TAAACAGAGTTTTCCAAATTAAAATAGACCTGtt--ttttatagaaatgaaagagaaaagaatttcaaagttcactacaagaatccttaacaagaactacttacattcgaagaaaaccacagataatcgtaagaagccatgtgacagagaggaccaggatgccacgaaaatggcctcggctacaaataggccatttgatccttggctcactggcatctctctagattttcaagtatacaatgttcaatt-tgctgtgcaaggtaattccaccttgcaaaggatttgatgt-----tacattttaccacacatgaaactgaattaaacttttacagaattggaaatgcacatcattgatctaaacaaatgaaacaagaaaagagta---ggaaggaatacccagtgatggaatagca
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       35095 411 -   1829203 TTCCTTAAACAGAGTTTTCCAAATTAAAATATACCTGtt--ttttatagaaatgaaagagaaaagaatttcaaagttcattacaaggatccttaacaagaactacttacattggaagaaaaccacagagaattgtaaggagccatgtgacagagaggaccaggatgccatgaaaatggccttggctacaaataggccatctgatccttggctcactggcatctctccagattttcagttatacaatgttcaatCATGCTGTGCAAGGTAGTTCCGTCTTGCAAaggatttgatgt-----tacattttaccacacatgaaactgaattaaacttttacagaattggaaatgcacatcattgaccaaaacaaatgaagcaagaaaagagta---ggaaggaatacccagtgacagaatagca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30294242 409 + 171630274 TTCCTTAAACAGAATTTT-AAAAATAACATATATCTGGT--TTTTGTAGAAAGGAAAGAGAAAAGAATACCAAAGTTCACTGCAAGCATTCTTAACAAGAACAACTTACATTGGAAGAAAACCACAGAGAATTGTAAGGAGCCATGTGACAGAGAGAACATGGATGCCATGAAAATGGCCTTGGCTAGGAATAGGTTATTTGATCCTTGGCTCAATGGCATCTCTCTAGATTTTCAAGTGTACAATGTTCAATC-TGATGTGCAAGGTAATTCCATCTTGCAAAGGATATAATGt-----tacattttaccacacatataactgaattaaacttttacagaattggaaatacacatcattgatcaacataaatgaaaccacaaaatagta---gaaaggaataaccagtgatggaagagca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341             69086 404 +    515838 CTTATTAAACAGAGTTTTCCAAAATAAAACATATCTGGC--TTTTATtaaaatggaagagaaaagaatactaaagttcattgcaagaatcctcaacgagaactacttacattggaagaaaaccatagagaattgtaaggagccatacgacagagaggatgaggatgccatgaaaatggctttggctaaaaataggtcatttgatccttagctccatggcatctctctagatttttaagtatacagtgttcaatc-tgatGTGCAAGGTAATTCCTTCCTGCAAAGGATGCCATGT-----TACATTTTACTacat------ctgaattaaacttttaccaaattggaaatgcacatcattgatcaaaataaatgaaacaagaaaagagta---gaaaggaataaccattgatagaatagca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      463758 409 -   1771730 TTCTTTAAACAGAGTTTTTCAAATTAACATATACCTGGT--TTTTGTAgaaaggaaaaagaaaagaataccaaagttcactgcaagaatccttaagaagaattacttacattgggagaaaaccacagagaattggaaggagccatgtcacagaaaggaccaggacaccatgaaaatgaccttggttagaaataggtcatttgat-cgtggctcactggcatctctctagattttcaagtatacagtattcaata-tgatgagcaaggtaattcaaccttgcaaaggatttgatgt-----tatattttatcatacatacaactgaattaaacttttacacaattggaaatgcacatcattgatcaaactaaataaaaccacaaaatagta---gaaatgaataatcagtgatggaacagca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      181053 410 -    383796 TTCCTTAAACAGAGTTTTTCAAATTAAAATATACCTGGT--TTTTGTAgaaaggaaagagaaaagaatatcaaagttcactgcaagaatccttaacaagaactacttacattggaagaaaaccacagagaattgtaaggagccatgtgacagagggaacatggattccatgaaaatggccttggctagaaatagatcatttgatccttggctcactggcatctctctagattttcaactatacaatgtccaatc-tgatgtgcatggtaaatccatcttgcaaaggatatgatgt-----tacattttaccacacatacaactgaattaaacttttacagaattggaaatgcacaacatagatcaaaataaatgaaaccacaaaatagaa---gaaaggaataaccagtgatggaatagga
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17140938 410 -  18854210 CTCCTTAGACTATGCCT-----AGGGATGCATTTTTGATAATTTTTTCTAAATgaaag----gaaaataccaaagttcattgccaagatccctaataagaactatttacattggaacaaagccacagctaatagtaatacaccatgtgacagaaaagagcaggatgccatgaaagtcaccttggctagaacatggtcatttgaccctcagctcactggcaacttTGTGGATTCTCTGGGATAGAAAGTTGAACC-TGATTAGCAAGGAAACTCTatcttgcaaaggagttagtgtgttacttctatttaccacacatacatctgaatt-aacttttatagaattggaaaaacagagtgttgattaaaataaattaaacaggaaaacattattttaaaaaaacaaccagtattgaggcaaca
i otoGar3.GL873550         C 0 N 0
e micMur3.chr6                240797 2210 + 123392446 T
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=998658.000000
s hg38.chr6_GL000254v2_alt   1139166 198 +   4827813 aatatgaatggaaaacagaataggactgctaa-------aaag----aaaaaaaa-att-cagaagcatgtaatagcagcgctatttagaatcatagtggtgtccaaatcacttctatcacatctcattcaataccacaacaaaagatgttaagtttattatagaatgcccatcaaatagccagtttttg----------aaaa--------aaacttgtttctcaatt
s panTro5.chr6              30097649 198 + 175400573 aatatgaatggaaaacagaataggactgctaa-------aaag----aaaaaaaa-att-cagaagcatgtaatagcagtgctatttagaatcgtagttgtgtccaaatcacttctatcacatctcattcaataccacaacaaaagatgttaagtttattatagaatgcccatcaaatagccagtttttg----------aaaa--------aaacttgtttctcaatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30328323 199 + 173848474 aatatgaatggaaaacagaataggactgctaa-------aaag----aaaaaaaa-attacagaagcatgtaatagcagtgctatttagaatcatagtggtgtccaaatcacttctatcacatgtcattcaataccacaacaaaagatgttaagtttattatagaatgcccatcaaatagccagtttttg----------aaaa--------acacttgtttctcaatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6148936 197 +   6154872 aataagaatggaaacagaaataggactgctaa-------aaag----aaaaaaaa-att-cagaagcatgtaatagcagtgctatttagaatcgtagtggtgtccaaatcacttctatcacatctcattcaataccacaac-aaagatgttaagtttattatagaatgcccatcaaatagccagtttttt----------gaaa--------aaacttgtttctcaatt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74715586 209 + 122973662 aatatgaatggaaaacagaataggactgctaa-------aaag---aaaaaaaaa-att-cagaagcacataataacagtgctatatagaatcatagttgtgtccaaatcacttctatcacaactcatttaataccacaacaaaagatgttaagtttattatagaatgcccactcaatagccagtttttgaaaaaaaaataaaa--------aaactattttctcaatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30478693 201 + 172585720 aatatgaatggaaaacagaataggactgctaa-------aatgaaaaaaaaaaaa-aat-tggaagcacataatag-agtgctatatggaatcacagtggtgtccaaatcagttctatcacatcacattgattaccacaacaaaagatgct-agtttattatagaatgtccaccgaatagccagtttttg----------aaaaa-------caacttgtttctcaatt
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29298542 205 -  71996105 aatatgaatggaaaacagaataggactgctaa-------aaag----aaaaaaaa-att-cggaagcgcataatag-agtgctatatagaatcatagtggtgttcaaatcacttctatcacatctcattgactaaaacaacaaaagatgttaagtttattatagaatgtccaccgaatagtcagtttttg----------gaaaaaaaaaaccaacttgtttctcaatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      134207 205 +    273075 aatataaatggaaaacagaataggactgctaa-------aaag---aaaaaaaaa-att-tggaagcatataatag-agagctatatggaatcatagtggtgtccaaatcacttctatcacatctcattgaataccacaacgaaagacgtaaagtttattatagaatgtccactgaatagccagtttttg----------aaaaaaaaaaa-aaacttgtttctcaatt
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       35506 204 -   1829203 aatatgaatggaaaacagaataggactgctag-------aaag--aaaagaaaaa-ttt-cagaagcacataatag-agtgctatatagaatcatagtggtgttctaatcacttctatcacacctcattgaataccacaacgaaagatgttaagtttattatagaacgcccactgaatagccagtttttg----------aaaaaaaaa---aaacttgtttctcaatt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30294651 204 + 171630274 aatatgaatggaaaacaag--aggactgcaacaaattttaaaa----aaaacaacactt-cagatgcacataatagcagtgctatttagaatcatagtggtgtccgaatcacttctatcacatctcactcaatgccataacaaaagatgttaagtttattatagaatgtccactgaaaagccagtttttg----------ggaa--------aaaaatttttctcaatt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341             69490 192 +    515838 aatacgaaaggacaacaaaataggactg-----------aaaa----aaaaaaac-ctt-cagaagcacataataccattgctatttagaatcatagtggtgtctaaattacttctatcacatc-cattcaataccagaacaaacaatgttaagtttattatagaatgcccactaaacagctagttttt-----------gaaa--------aaacttgtttctcaatt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      464167 202 -   1771730 aatatgaatgcaaaacaaaagggcaccgcaaaaaattaaaaaa--ataaaaaaat-ctt-cagatgcacataatagcagtgctatgtagaatcacagtggtgtccagatcacttctaccacatctcattcaatagcaaaacaaaagat-----gtttattatagaatgcccattgaagagccagtttttc----------aaaa--------aaacttgtttctcaatt
i cebCap1.NW_016107755v1   C 0 N 0
s aotNan1.NW_018496904v1      181463 203 -    383796 aatatgaatagaaaacaaaagaggactgcaaaaaatt--aaaa----aaaaaaacactt-cagatgcacgtaatagcagtactatttagaatcatagtgctgtcttaattacttctatcacatctcattcaatagcacaacaaaagatgttaagtttattatagactgcccactgagaagccagtattt-----------gaaa--------aaatttctttctcaatt
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=17152.000000
s hg38.chr6_GL000254v2_alt   1139364 7 +   4827813 agaacta
s panTro5.chr6              30097847 7 + 175400573 agaacta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30328522 7 + 173848474 agaacta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6149133 7 +   6154872 agaacta
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74715795 7 + 122973662 cgagcta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30478894 7 + 172585720 cgagcta
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29298747 7 -  71996105 cgagcta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      134412 7 +    273075 caagcta
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       35710 7 -   1829203 cgagcta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30294855 3 + 171630274 tg----a
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341             69682 7 +    515838 catgcta
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1      181666 7 -    383796 tgaacta
i aotNan1.NW_018496904v1   C 0 I 1124
e micMur3.chr6                240797 2210 + 123392446 T
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073 0 + 170955103 I

a score=198322.000000
s hg38.chr6_GL000254v2_alt   1139371 41 +   4827813 accatttcgggctatagcatcaagccaaaattattggcatc
s panTro5.chr6              30097854 41 + 175400573 actatttcgggctacagcatcaagccaaaattattggcatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30328529 41 + 173848474 accatttcgggctacagcatcaagccaaaattattggcatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6149140 40 +   6154872 actatttcgggctacagcatcaagcc-aaattattggcatc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74715802 41 + 122973662 accatttcgggctatggcatcaaaccaaagtcattggcatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30478901 41 + 172585720 accatttggggctacggcatcaaatcgaagttattggcatc
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29298754 41 -  71996105 accgtttcgggctatggcatcaaaccaaagttattggcatc
i chlSab2.chr17            C 0 I 1021
s manLeu1.NW_012101121v1      134419 41 +    273075 accatttcgggctacggcatcaaaccaaagttattggcatc
i manLeu1.NW_012101121v1   C 0 I 1026
s colAng1.NW_012115577v1       35717 41 -   1829203 accatttcaggctatggcgtgaaaccaaagatattagcatc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30294858 41 + 171630274 actatttctgactactgcatcaaaccaaagttattggcatc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341             69689 41 +    515838 accattttgggctactacatcaaaccaaagctattggcctc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      619665 41 -   1771730 accattttgggctactacatcaaaccaaagttattggcatc
i cebCap1.NW_016107755v1   N 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e aotNan1.NW_018496904v1      181673 1124 -    383796 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=8190.000000
s hg38.chr6_GL000254v2_alt   1139412 2 +   4827813 at
s panTro5.chr6              30097895 2 + 175400573 at
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30328570 2 + 173848474 at
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6149180 2 +   6154872 at
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74715843 2 + 122973662 at
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30478942 2 + 172585720 at
i rheMac8.chr4             C 0 I 1010
s colAng1.NW_012115577v1       35758 2 -   1829203 at
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30294899 2 + 171630274 at
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341             69730 2 +    515838 at
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      619706 2 -   1771730 at
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e aotNan1.NW_018496904v1      181673 1124 -    383796 I
e manLeu1.NW_012101121v1      134460 1026 +    273075 I
e chlSab2.chr17             29298795 1021 -  71996105 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073 0 + 170955103 I

a score=-2309.000000
s hg38.chr6_GL000254v2_alt   1139414 5 +   4827813 gct--aa
s panTro5.chr6              30097897 5 + 175400573 gct--aa
i panTro5.chr6             C 0 I 9
s panPan2.chr6              30328572 5 + 173848474 gct--aa
i panPan2.chr6             C 0 I 9
s gorGor5.CYUI01015250v1     6149182 5 +   6154872 gct--aa
i gorGor5.CYUI01015250v1   C 0 I 9
s nomLeu3.chr1a             74715845 5 + 122973662 gtt--aa
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115577v1       35760 5 -   1829203 gtt--aa
i colAng1.NW_012115577v1   C 0 I 1030
s calJac3.chr4              30294901 3 + 171630274 gct----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341             69732 3 +    515838 tct----
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      619708 5 -   1771730 gctaa--
i cebCap1.NW_016107755v1   C 0 N 0
e micMur3.chr6                240797 2210 + 123392446 T
e aotNan1.NW_018496904v1      181673 1124 -    383796 I
e manLeu1.NW_012101121v1      134460 1026 +    273075 I
e chlSab2.chr17             29298795 1021 -  71996105 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073 0 + 170955103 I
e rheMac8.chr4              30478944 1010 + 172585720 I

a score=-1306.000000
s hg38.chr6_GL000254v2_alt   1139419 24 +   4827813 taatttttactaaa-gtaaaataaa
s nomLeu3.chr1a             74715850  9 + 122973662 --------gctagatgt--------
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4              30294904 11 + 171630274 -aa-----gctagatgt--------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341             69735 11 +    515838 -aa-----gttagatgt--------
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e aotNan1.NW_018496904v1      181673 1124 -    383796 I
e colAng1.NW_012115577v1       35765 1030 -   1829203 I
e manLeu1.NW_012101121v1      134460 1026 +    273075 I
e chlSab2.chr17             29298795 1021 -  71996105 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I
e rheMac8.chr4              30478944 1010 + 172585720 I
e gorGor5.CYUI01015250v1     6149187  9 +   6154872 I
e panPan2.chr6              30328577  9 + 173848474 I
e panTro5.chr6              30097902  9 + 175400573 I

a score=128399.000000
s hg38.chr6_GL000254v2_alt   1139443 59 +   4827813 gtttactgaagtatgagattcacatttttgtaaatgaaaagcaatttgattaggcaTTT
s panTro5.chr6              30097911 58 + 175400573 gtttattgaagtatgagattcacatttttgtaaatgaaaag-aatttgattaggcaTTT
i panTro5.chr6             I 9 C 0
s panPan2.chr6              30328586 59 + 173848474 gtttactgaagtatgagattcacatttttgtaaatgaaaagcaatttgattaggcaTTT
i panPan2.chr6             I 9 C 0
s gorGor5.CYUI01015250v1     6149196 59 +   6154872 gtttactgaagtatgagattctcatttttgtgaatgaaaagcaatttgattaggcaTTT
i gorGor5.CYUI01015250v1   I 9 C 0
s nomLeu3.chr1a             74715859 59 + 122973662 gttgaccaaagtatgaggttcacatttttgtaaatgaaaagcaatttggttaggcaatt
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4              30294915 59 + 171630274 gctgactgaagtatgagattcacatttttgtaaatgaaaagcaatctgattaggcaTTT
i calJac3.chr4             C 0 I 1618
s saiBol1.JH378341             69746 59 +    515838 gttgactggcgtatgagatttacatttttgtaaatgaaaaaccatctgattaggcaatt
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1      351117 59 -   1771730 gttgactgaagtatgagattcacatttttgtaaaagaaaagcaatctgattaggcaTTT
i cebCap1.NW_016107755v1   N 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e aotNan1.NW_018496904v1      181673 1124 -    383796 I
e colAng1.NW_012115577v1       35765 1030 -   1829203 I
e manLeu1.NW_012101121v1      134460 1026 +    273075 I
e chlSab2.chr17             29298795 1021 -  71996105 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I
e rheMac8.chr4              30478944 1010 + 172585720 I

a score=1179.000000
s hg38.chr6_GL000254v2_alt   1139502 1 +   4827813 T
s panTro5.chr6              30097969 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30328645 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6149255 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74715918 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378341             69806 1 +    515838 c
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1      351176 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 N 0
e micMur3.chr6                240797 2210 + 123392446 T
e aotNan1.NW_018496904v1      181673 1124 -    383796 I
e calJac3.chr4              30294974 1618 + 171630274 I
e colAng1.NW_012115577v1       35765 1030 -   1829203 I
e manLeu1.NW_012101121v1      134460 1026 +    273075 I
e chlSab2.chr17             29298795 1021 -  71996105 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073 0 + 170955103 I
e rheMac8.chr4              30478944 1010 + 172585720 I

a score=1365.000000
s hg38.chr6_GL000254v2_alt   1139503 1 +   4827813 T
s panTro5.chr6              30097970 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30328646 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6149256 1 +   6154872 T
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74715919 1 + 122973662 t
i nomLeu3.chr1a            C 0 I 967
s saiBol1.JH378341             69807 1 +    515838 t
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e aotNan1.NW_018496904v1      181673 1124 -    383796 I
e calJac3.chr4              30294974 1618 + 171630274 I
e colAng1.NW_012115577v1       35765 1030 -   1829203 I
e manLeu1.NW_012101121v1      134460 1026 +    273075 I
e chlSab2.chr17             29298795 1021 -  71996105 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073 0 + 170955103 I
e rheMac8.chr4              30478944 1010 + 172585720 I

a score=29094.000000
s hg38.chr6_GL000254v2_alt   1139504 4 +   4827813 ttct
s panTro5.chr6              30097971 4 + 175400573 ttct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30328647 4 + 173848474 ttct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6149257 4 +   6154872 ttct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74716887 4 + 122973662 ttct
i nomLeu3.chr1a            I 967 C 0
s rheMac8.chr4              30479954 4 + 172585720 ttct
i rheMac8.chr4             I 1010 C 0
s chlSab2.chr17             29299816 4 -  71996105 ttct
i chlSab2.chr17            I 1021 C 0
s manLeu1.NW_012101121v1      135486 4 +    273075 ttct
i manLeu1.NW_012101121v1   I 1026 C 0
s colAng1.NW_012115577v1       36795 4 -   1829203 ttct
i colAng1.NW_012115577v1   I 1030 C 0
s calJac3.chr4              30296592 4 + 171630274 ttct
i calJac3.chr4             I 1618 C 0
s saiBol1.JH378341             69808 4 +    515838 ttct
i saiBol1.JH378341         C 0 I 7623
s cebCap1.NW_016107755v1      473408 4 -   1771730 ttct
i cebCap1.NW_016107755v1   N 0 C 0
s aotNan1.NW_018496904v1      182797 4 -    383796 ttct
i aotNan1.NW_018496904v1   I 1124 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073 0 + 170955103 I

a score=510321.000000
s hg38.chr6_GL000254v2_alt   1139508 113 +   4827813 gcacagcaaaagaaactatcatcaatcacagtgaacagacatcctacagaatgggagaaaaattttgcagt------------ctatccatctgacaaaagtctagtattcagaatccacaaaga
s panTro5.chr6              30097975 113 + 175400573 gcacagcaaaagaaactatcatcaatcacagtgaacagacatcctacagaatgggagaaaaattttgcagt------------ctatccatctgacaaaagtctagtaatcagaatccacaaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30328651 113 + 173848474 gcacagcgaaagaaactatcatcaatcacagtgaacagacatcctacagaacgggagaaaaattttgcagt------------ctatccgtctgacaaaagtctagtaatcagaatccacaaaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6149261 113 +   6154872 gcacagcaaaagaaactatcatcaatcacagtgaacagacatcctacagaatgggagaaaaattttgcagt------------ctatccatctgacaaaagtctagtaatcagaatccacaaaga
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74716891 109 + 122973662 gcacagcaaaagaaactatcatcag----agcaaacagacatcctacagagtgggagaaagtttgtgcaat------------ctatccatctgacaaaggtctaatattcagaatctacaaaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30479958 109 + 172585720 gcacagcaaaagaaattatcatcag----agcaaacagacatcctaccgaacgggagaaaatttgtgcaat------------ctactcatctgacaaaggtctaatattcagaatctacaaaga
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29299820 108 -  71996105 gcacagcaaaagaaactatcatcag----agcaaacagacatcctat-ggatgggagaaaatttgtgcaat------------ctactcatctgacaaagttctaatattcagaatctacaaaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      135490 109 +    273075 tcacagcaaaagaaactaccatcag----agcaaacagacatcctacagaatgggagaaaatgtgtgcaat------------ctattcatctgacaaaggtgtaatattcagaatctacaaaga
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       36799 109 -   1829203 gcacagcaaaacaaactatcatcag----agcaaacagacatcctacggaatgggagaaaatttgtgcaat------------ctatccatctgatcaaagtctaatatttagaatctacaaaga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30296596 121 + 171630274 gcacagcaagagaaactatcatcag----agtgaacagacatcctacaaaatgagagaaaaaaatttcaatatatcttccaaaatatccatctgacaaagatctaatattcagaatctacaaata
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1      473412 121 -   1771730 gcacagcaagagaaactatcatcag----agtgaacagacatcttacagaatgggagaaaaaattttcaatatatctttcaacatatccctctgacaaaggtctattattcagaatttacaaata
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      182801 121 -    383796 gcacagcaagagaaactatcatcag----agtgaacagacatcctacaaaatgggagaaaaaatgttcaatatatctttcaaaatatccatctgacaaaggtctaatattcagaatctacaaata
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             69812 7623 +    515838 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macNem1.NW_012012100v1       84403 2380 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=424206.000000
s hg38.chr6_GL000254v2_alt   1139621 82 +   4827813 acttaagcaaatttacatga----aaaaaa---aacttcattaaaaagtagacaaagaacttgaacagacacttct--aaagaagacatac
s panTro5.chr6              30098088 78 + 175400573 acttaagcaaatttacatga----aaaaa-------ttcattaaaaagtagacaaagaacttgaacagacacttct--aaagaagacatac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30328764 79 + 173848474 acttaagcaaatttagatga----aaaaa----aacttcattaaaaagtagacaaagaacttgaacagaca--tcc--aaagaagacatac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6149374 80 +   6154872 acttaagcaaatttacatga----aaaaa-----acttcattaaaaagtagacaaagaacttgaacagacacttct--aaagaagacatac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74717000 87 + 122973662 acttaagcaaatttacatga----aaataaaacaacttcattaaaaagtgggcaaaggacatgaacagaaacttctaaaaagaagacgtgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30480067 80 + 172585720 acttaagcaaatttacatga----aaaaa--acaacttcattaaaaagtggacaaaggatttgaacagacacttctc-----aagatgtac
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       86783 85 +   1495729 acttaagcaaatttacatga----aaaaa--acaacttcattaaaaagtggacaaaggacctgaacagacacttctcaaaagaaggcatac
i macNem1.NW_012012100v1   M 2380 C 0
s chlSab2.chr17             29299928 85 -  71996105 acttaagcaaatttacatga----aaaaa--acaacttcattaaaaagcggacaaaggacctgaacagacacttctcaaaagaaggtgtac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      135599 85 +    273075 acttaagcaaatttacatga----aaaaa--acaacttcattaaaaagtggacaaaggatgtgaacagacacttctcaaaagaagatgtac
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       36908 84 -   1829203 acttaagcaaatttgcatg-----aaaaa--acaacttcattaaaaagtggacaaagggcatgaacagacacttctcaaaggaagacatac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30296717 85 + 171630274 aattaggcaaatttacatga----aaaaa--accactttcttaaaacatggacaaaggacatgaacagacatttctcaaaagaacaaatac
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1      473533 89 -   1771730 acttaggcaaagttacatgaaaagaaaaa--aaaactttatcaaaaagtggacaaaggacatgaacagacacttctcaaaagaacatgtac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      182922 85 -    383796 aattaggcaaatttacatga----aaaaa--accactttcttaaaaaatggacaaagaacatgaacagacacttctcaaaagagcaaatac
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             69812 7623 +    515838 I
e cerAty1.NW_012002535v1      136930 4368 -    863181 I
e macFas5.chr4             141029073  0 + 170955103 I

a score=5510716.000000
s hg38.chr6_GL000254v2_alt   1139703 812 +   4827813 atgtggccaacaaaaatatgaaaaaaagctcaacatcgctgatcattggagaaatgc-aaatcaaaaccacaaatgagataccatctcatgtcagtcagaatggcaattattaaaaagtcaagaaacaacagatgctggcgaggttgcagagaaataggaatgcttttacactgttggtggaaaagtcaatcggttaatccattgtggaagacagtgacagtgtggtgattcctcagagatttagaatcagaaataccatttgatccagcaatcgcattacagggtatatacccaaaggaatacaaatcattctattataaagatacatgcatgtttaca-ttcatggcagcactattcacaatagcaaacacatggaatcaacccaaatgcccatcaatgatgaactggataaagaaaatgtggtacatatacaccatggaatattatgcagccataaaaaggaatgagatcaagtcctttgcaggg-atatggatgaagctggaagccattatcctcagcaaactcacacaggaacggaaaaccaaacaccacatgttctcatttataattgggaactgagtaatgag-aacacatggacacagggagaggaacaacacacactggggcctattggggcaggg--tggtgg-tgggaggatcattag-caaaaatagctaatgcatgccagggttaatacctaggtgatgagttgacaggtgcagcaaaccaacatggcacatgtttacctatgtaacaaacctgcacatcctgcacgtgtaccctggaacttaaaaaaaa-ttaaaTTAAAAGACAAG
s panTro5.chr6              30098166 813 + 175400573 atgtggccaacaaaaatatgaaaaaaagctcaacatcgctgatcattagagaaatgc-aaatcaaaaccacaaatgagataccatctcatgccagtcagaatggcaattattaaaaagtcaagaaacaacagatgctggcgaggttgcagagaaataggaatgcttttacactgttggtggaaaagtaaatcggttaatccattgtggaagacagtgacagtgtggtgattcctcagagatttagaatcagaaataccatttgatccagcaatcgtattacagggtatatacccaaaggaatataaatcattctattataaagatatatgcatgtttaca-ttcatggcagcactattcacaatagcaaagacatggaatcaatccaaatgcccatcaatgatggactggataaagaaaatgtggtacatatacaccatggaatattatgcagccataaaaaggaatgagatcaagtcctttgcaggg-atatggatgaagctggaagccattatcctcagcaaactcacacaggaacggaaaaccaaacaccacatgttctcatttataattgggaactgagtaatgag-aacacatggacacagggagaggaacaacacacactggggcctattggggcaggg--tggtgg-tgggaggaacattag-caaaaatagctaatgcatgccagggttaatacctaggtgatgagttgacaggtgcagcaaaccaacatggcacatgtttacctatgtaacaaacctgcacatcctgcacgtgtaccctggaacttaaaaaaaaattaaaTTAAAAGACAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30328843 812 + 173848474 atgtggccaacaaaaatatgaaaaaaagctcaacatcgctgatcattagagaaatgc-aaatcaaaaccacaaatgagataccatctcatgccagtcagaatggcaattattaaaaagtcaagaaacaacagatgctggcgaggttgcggagaaataggaatgcttttacactgttggtggaaaagtaaattggttaatccattgtggaagacagtgacagtgtggtgattcctcagagatttagaatcagaaataccatttgatccagcaatagcattatagggtatatacccaaaggaatataaatcattctattataaagatatatgcatgtttaca-ttcatggcagcactattcacaatagcaaagacatggaatcaacccaaatgcccaccaatgatggactggataaagaaaatgtggtacatatacaccatggaatattatgcagccataaaaaggaatgagatcaagtcctttgcaggg-atatggatgaagctggaaggcattatcctcagcaaactcacacaggaacggaaaaccaaacaccacatgttctcatttataattgggaactgagtaatgag-aacacatggacacagggagaggaacaacacacactggggcctattggggcaggg--tggtgg-tgggaggatcattag-caaaaatagctaatgcatgccaggattaatacctaggtgatgagttgacaggtgcagcaaaccaacatggcacatgtttacctatgtaacaaacctgcacatcctgcacgtgtaccctggaacttaaaaaaaa-ttaaaTTAAAAGACAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6149454 807 +   6154872 atgtggccaacaaaaatatgaaaaaaagctcaacatcgctgatcattagagaaatgcaaaatcaaaacgacaaatgagataccatctcatgccagtcagaatggcaattattaaaaagtcaagaaacaacagatgctggcaaggttgcagagaaataggaatgcttttacactgttggtggaaaagtaaatcagttaatccattgtggaagacagtgacagtgtggtgattcctcagagatttagaatcagaaataccatttgatccagcaatcgcattacagggtat-tacccaaaggaatataaatcattctattataaagatatatgcatttttaca-ttcatggcagcactattcacaatagcaaagacatggaatcaacccaaatgcccatcaatgatggactggataaagaaaatgtggtacatatacaccatggaatattacgcagccataaaaaggaatgagatcaagtcctttgcagggaatatggatgaagctggaagccattatcctcagcaaactcacacaggaacagaaaaccaaacaccacatgttctcatttataattgggaactgagtaatgagaaacacatggacacagggagaggaacaacacacactggggcctattggggcaagggtgggtgg-tgggaggatcattag-caaaaatagctaatgcatgccagggttaatacctaggtgatgagttgacaggtgcagcaaaccaacatggcacatgtttacctatgtaacaaacctgcacatcctacacatgtaccctggaacttaaaaaaaaattaaatt----------
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74717087 796 + 122973662 atgtggccaacaaaaatatgaaaaaaagctcaacatcactgatcattacagaaatgc-aaatcaaaaccacaaatgagataccatctcatgccagtcagaatggcaattattaaaaagccaagaaacaacagatgctggcgaggttgcagagaaataagaaggcttttacatggtt-gtggaaaagtaaatcagttaatccattgtggaa------gacagtgtggtgattcctcaaagatttagaaccagaaataccattcgacccagcagtcccattacagggcttatacccagaggaatataaatcattctattataaaggtatatgcatgtttaca-ttcattgcagcactattcacaatagcaaagacatggaatcaacccaaatgcccatcaatgatggactggataaagaaaatatggtatatatacaccacagaatattatgcagccataaaaaggaatgagatcaagtcctttgcagag-atatggattaagctggaagccattatcctcagaaaactaacacaggaacagaaaaccaaacaccacatgtcctcatttataattgggaactgagcaatgag-aacacatggacctaggaagaggaacaacatacactggggcctgttgggggaggg--tggtgg-tggggggatcattag-caaaaatagctaatgcatgccagggttaatacctaggtgatgggttgataggtgcggcaaaccaccacggcacacgtttacctatgtaacaaacctgcacatcctgcacatgtaccctgaaacttaaaattaaattaaatt----------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30480147 792 + 172585720 atgcgtccaacaaaaatatgaaaaaaaggtcaacatcacagatcattacagaattgc-aaatcaaaaccacaaatgagataccatctcatgccagtcagaatggcaattattaaaaagtcaagaaacaacagatgctggcaaggttgcagagaaatagaaatgcttttacactgttggaggaaaagtaactcagttaatccattgtggaa------gacagtgtggcaattcctcaaagatttagaaccggaaataccatttgacccagcaatcccaatacaagatatatacccaaaggaatataaatcattctattacaaagttatatgcatgtttaca-ttcattgcagcactattcacaatagcaaaaacatggaacctacccaaatgcccatcaatgatgaacttgataaagaaaatatggtacatatacaccatagaatatcatgcagccacaaaaaggaatgagatcaagtccttttcagtg-atatggatgaagctggaagccattatcctcagcatactaacacaggaacagaaaaccaaacaccacatgttctcatttataattgggaactgagcaatgag-aacacatggacacagggagatgaacaatacacactggggcctcttgggagaggg--cagtggttggg-ggatcattag-caaaaatagctaatgcatgccagggttaatacctaggtgatgagttgatacgtgcagcaaaccaccatggtacatatttacctatgtaacaaacctgcacatcctgcacacgtatcctggaact-----taaaattaaatt----------
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       86868 798 +   1495729 atgtggccaagaaaaatacgaaaaaaaggtcaacatcactgatgattacagaaatgt-aaatcaaaaccacaaatgagataccatctcatgccagtcagaatggcaattattaaaaagtcaagaaacaacagatgctggtgaggttgtggagaaacaggaatgcttttacactgttggaggaaaagtaaagcggttaatccattgtggaa------gacagtgtggcaattcctcaaagatatagaaccagacatactatttgacccagcaatcccaatacagggtatataactaaaggaatataaatcattctattataaagatatatgcatatttaca-ttcattgcagcactattcacaatggcaaagacatggaatcaacccaaatgcccatcaatgatggactggataaagaaaatatggtacatatacaccatggaatattatgcagccataaaaaggaatgagatcaagtccttttcaggg-atatggatgaagctggaagccattatcctcagcaaactcacacaggaacagaaaaccaaacaccacatgttctcatttataattgggaactgagcaatgag-aacacatggacacagtgagaggaacaacacacactggggccttttgggagaggg--cagtggttgggaagatcattag-caaaaatagctaatgcatgccagggttaatacctaggtgatgagttgataggtgcagcaaaccaccatggcacacgttgacctatgaaacaaacctgcacatcctgcacatgtaccctggaacttaaaataaaataaaatt----------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      141298 791 -    863181 atgtggcctacaaaaatatgaaaaaaaggtc-acatcactgatcattacagaattgc-aaatcaaaaccacaaatgagacaccatctcatgccagtcagaatgacaattattaaaaagccaagaaacaacagatgctggcgaggttgtggagaaataggaatgcttttacactgttggatgaaaagtaactaggttaatccattgtggaa------gacagtgtggcaattcctcaaagatttagaagcagaaatatcatttgacccagcaatcccaatacagggtatatacccaaaggaatagaaatcattctattataaagttatatgcatgtttaca-ttcattgcagcactattcacaatagcaaaaacatgcaatcaacccaaatgcacatcaatgattgacttgataaagaaaatatggtacatatacaccatagaatatcatgtggctataaaaaggaatgagatcaagtccttttcaggg-atatggatg-agctggaagccattatcctcagcaaactaacacaggaacagaaaaccaaacaccacatgttctcatttatgattgggaactgagcaatgag-aacacatggacacagtgagaggaacaacacacactggggcctgttgggagaggg--caatggttgggaggatcattag-caaaaacagctaatgcatgccagggttaatgcctaggtaatgggttgataggtgcagcaaaccaccatggcacatgtttacctatgtaacaaacctgcacattctgcacgtgtatcctggaact-----taaaattaaatt----------
i cerAty1.NW_012002535v1   I 4368 C 0
s chlSab2.chr17             29300013 797 -  71996105 atgtggccaacaaaaatatgaaaaaaaggtcaacatcactgatcattatagaaatgt-aaatcaaaaccacaaatgagataccatctcaagctagtcagaatggcaattattaaaaagtcaagaaacaacagatgctggcaaggttgcggagaaataggaatccttttacactgttggaggaaaagtaaagtggttaatccattgtggaa------gacagtgtggcaatttctcaaagatacagaaccagacataccatttgacccagcaatcccaatacagggtatatacccaaaggaatataaatcattctattataaagatatatgcatatttaca-ttcattgcagcactattcacaatagcaaagacatggaatcaacccaaatgcccatcaatgatggactggataaagaaaatatggtacatatacaccatggaatattatgcagccat-aaaaggaatgagatcaagtccttttcaggg-atatggatgaagctggaagccactatcctcagcaaactaacacaggaacagaaaaccaaacaccacatactctcatttataattgggaactgagcaatgag-aacacatggacacagggagaggaacaacacacactggggcctcttgggagaggg--cagtggttgggaggatcattag-caagaatagctaatgcatgccagggttaatacctaggtgatgagttgataggtgcagcaaaccaccatggcacacgttgacctatgaaacaaacctgcacatcctgcacaggtactctggaacttaaaataaaataaaatt----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      135684 791 +    273075 atgtggcctacaaaaatatgaaaaaaaggtc-acatcactgatcattacagaattgc-aaatcaaaaccacaaatgagacaccatctcatgccagtcagaatggcaattattaaaaagccaagaaacaacagatgctggcgaggttgtggagaaataggaatgcttttacactgttggatgaaaagtaactaggttaatccattgtggaa------gacagtgtggcaattcctcaaagatttagaagcagaaatatcatttgacccagcaatcccaatacagggtatatacccaaaggaatagaaatcattctattataaagttatatgcatgtttaca-ttcattgcagcactattcacaatagcaaaaacatgcaatcaacccaaatgcacatcaatgattgacttgataaagaaaatatggtacatatacaccatagaatatcatgtggctataaaaaggaatgagatcaagtccttttcaggg-atatggatg-agctggaagccattatcctcagcaaactaacacaggaacagaaaaccaaacaccacatgttctcatttatgattgggaactgagcaatgag-aacacatggacacagtgagaggaacaacacacactggggcctgttgggagaggg--cagtggttgggaggatcattag-caaaaacagctaatgcatgccagggttaatgcctaggtgatgggtcgataggtgcagcaaaccaccatggcacacgtttacctatgtaacaaacctgcacattctgcacgtgtatcctggaact-----taaaattaaaTT----------
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       36992 793 -   1829203 acatggccaacaaaaatatgaaaaaaaggtcaacatcaccaataattacagaaatgc-aaataaaaaccacaaatgagataccatctcatgccactcagatta--aattattaaaaagtcgagaaagaatagatgctggcgaggttgcggagaaataggaatgcttttgcactgttggtggaaaagtaaatcaattaatccattgtggaa------gacagtgtggcgattcctcaaagatgtagaaccagaaataccatttgacccagcaatcccattacagggtatatacccaaaggaatataaatcattctgttataaagatatatgcatgtttaca-ttcattgcagcactattcacaatagcaaagacatggaatcaacccaaatgtccatcagtgatggatgggatgaagaaaatatggtacatatacaccat-gaatattattcagccataaaaatgaattcgatcaagtcctttgcagga-ataaggatgaagctagaagccgttatcctcagcaaacta--acaggaacagaaaaccaaacactgtatgttctcatttataattgggaactgagcaatgag-aacacatggacacagggagaggaacaacacacactggggcaggttgggagaggg--cagtggttgggaggatcattag-caaaagtagctaatgcatgccagggttaatacctaggtgatgagttgataggtgcagcaaaccaccatggcacatgtttacctatgtaacaaacttgcacatcctgcacgggtaccctggaacttaaaataaaattaaatt----------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30296802 805 + 171630274 attcagccaacaaacatattttaaaaaactaaacatcactgatcattagaaaaatgc-aaatcaaaaccac-aatgagataccatctcgtgccagtcagagtggcaattattaaaaagtcaagaaaccacagatgatggggaggttgaggagaaataaaaatgcttttacactgttggt-ggaatgtaaattggttcaaccattgtggaa------gacactgtggcaattccccaaaaatttagaactagaaataccatttcacccagcaatcccattacagggtatatacccaaaggaatagaaatcattttattataaagatacctgcatgtgtattcttcattgcagcactatttacaatagcaaagacacaaaatcaacttaaatgcccaccaatgatggactggataagtaaaatatgatactcctacaccaaggaatattatgtagccctgaaaaggaatgagatcaactcctttgcaggg-atataggtgaagctggaggccactatcctcagcaaactaacacagaaacagaaaaccatacactgcatgttctcacatataattgagagccgagcaatgag-aacacatggacacagggagaggaacaacacacactggggcctgttgtgggaggt--tagtgg--tgaggaagcattag-gaaaaatacctaacgcatgccaggcttcatacctaggtgatgggttgataggtgcagcaaaccaccatggcacatgtttacctgtgtaacaaacctgcacatcctgcacatgtaccctagaacttaaaatgaaataaaaTTACAAGGCAAG
i calJac3.chr4             C 0 I 18
s cebCap1.NW_016107755v1      473622 800 -   1771730 atgcagccaacaaacatatttttaaaagctgaacatcactgatctttagagaaatgc-aaatcaaaaccac-aatgagataccatctcatgccagtcagcatggcaattattaaaaagtcaagaaacaacacatactggagaagtttcagagaaatggaaatgcttttacactgttggtagaaatgtaaattggttcaaccattgtggaa------gagagtgtggcaattcctcaaagattaagaactagaaataccatgtgacccaacaatcccagtaaagggtatatacctaaaggaatagaaatcattctattgtaaggacagatgcatgtgtgtg-ttcattgccacactattcacaatagcaaagacatggaatcaacccaaatgcccatcaatgatggactggatgaataaaatgtggtacatctacaccatgcaatattatgcaaccacaaaaaggaatgagatcaagtcctttgcaagg-atatggatgaagctggaagccattaacctcagcaaactaacacaggaacagaaaaccatacactgcatgttctcatgaataattgagagctgagcaatgag-aacacatggacacagggagaggaacagcacacactggggcctgttgtgggaggg--tggtgg--ggggggagcattag-gaaaaatacctaatgcatgccaggcttcatacctaggtgatgggttgataggtgcagcagaccaccatggcgcacgtttacctatgtaacaaacctgcacatcctgcacgtgtaccctagaact-----tgaaataaaattacaagaTAAG
i cebCap1.NW_016107755v1   C 0 I 39
s aotNan1.NW_018496904v1      183007 805 -    383796 acacagccaacaaacatatttgaaaaaactgaacatcactgatcattagagaaatgc-aaatcaaaaccac-aatgagataccatctcatgccagtcagaatgacaattattaaaaagtcaagaaacaacagatgctggggaagttgaggagaaataggggtgcttttacactgttgatggaaatgtaaattggttcaaccattgtggaa------gacactgtggcaattcctcaaagatttagaactagaaataccatttcacccagcaat-ccattatggggtatatacccaaaggaatataaatcattttattataaagatacctgcatgtgtgtg-ttcattgcagcactattcacaatagcagaaacataaaatcaatccaaatgcccatcaatgatggactggatccataaaatatggtacacctacaccaaggaatattatgcagccctgaaaaggaatgagatcaagttatttgcaggg-atatagatgaagctggaggccattatcctcagcaaactaacacaggaacagaaaaccatatactgcatgttctcacatgtaattgaaagctgagcaatgag-aacacatggagacagagagcggaacaacacacactggggcctgttgtgggaggg--tggtgg-tggggggagcattagaaaaaaatacctaatgaatgccaggcttcatacctaggtgatgggttgataggtgcagcaaaccaccatggcacacgtttacctatgcaacaaacctgtacattctgcacatgtgcccta-aacttaaaatgaaataaaattaaaaGTCAAG
i aotNan1.NW_018496904v1   C 0 I 18
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             69812 7623 +    515838 I
e macFas5.chr4             141029073   0 + 170955103 I

a score=114061.000000
s hg38.chr6_GL000254v2_alt   1140515 31 +   4827813 CTTAAAGAAAAAGACAAGCTGAAA--GAGTTAA
s panTro5.chr6              30098979 31 + 175400573 CTTAAAGAaaaagacaagcttaaa--gagttaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30329655 31 + 173848474 CTTAAAGAAAAAGACAAGCTGAAA--GAGTTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6150261 24 +   6154872 -------aaaaaGATAAGCTTAAA--GAGTTAA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74717883 23 + 122973662 --------aaaagaCAAGCTTAAA--GAGTTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30480939 23 + 172585720 --------aaaagaCAAGCTTAAA--GAGTTAA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       87666 23 +   1495729 --------aaaagaCAAGTTTAAA--GAGTTGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      142089 23 -    863181 --------aaaagaCAAGCTTAAA--GAGTTAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29300810 23 -  71996105 --------aaaagaCAAGTTTAAA--GAGTCGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      136475 23 +    273075 --------aaaagacaagcttaaa--gagttaa
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       37785 23 -   1829203 --------aaaagaCAACCTTAAA--GAGTTAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30297625 33 + 171630274 attaaattaaaaGACAAGGTTAAACCATATTAA
i calJac3.chr4             I 18 C 0
s aotNan1.NW_018496904v1      183830 33 -    383796 ATTAAATTAAGAGACAAGGTTAAACTACATGAA
i aotNan1.NW_018496904v1   I 18 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             69812 7623 +    515838 I
e cebCap1.NW_016107755v1      474422 39 -   1771730 I
e macFas5.chr4             141029073  0 + 170955103 I

a score=1757524.000000
s hg38.chr6_GL000254v2_alt   1140546 264 +   4827813 TGAAAAATAATTAGATAAAAGAAGTCTTTGATTTTCAAAAACCTGAAACAATAGTTATAATTTtgcttttaacatatattcaaaacatttgatactgttcccttccagaggtgcatcttaattccctctcctgagtgtggcttggacttaatgaggcacttctgatatggcctggttctgtgttcccacccaaatctcatcttgaattgttatgcgaattgtaatcgctacctattgggggagggaccacatgggag------gtgattg
s panTro5.chr6              30099010 263 + 175400573 tgaaaaataatt-gataaaagaagcctttgattttcaaaaacctgaaacaatagttATAATTTtgcttttaacatatattcaaaatatttgatactgttcccttccagaggtgcatcttaattccctctcttgagtgtggcttggacttaatgagacacttctgatatggcctggttctgtgttcccatccaaatctcatcttgaattgttatgcgaattgtaatccctacctattgggggagggaccacatgggag------gtgattg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30329686 264 + 173848474 TGAAAAATAATTAGATAAAAGAAGTCCTTGATTTTCAAAAACCTGAAACAATAGTTATAATTTtgcttttaacatatattcaaaacatttgatactgttcccttccagaggtacatcttaattccctctcctgagtgtggcttggacttaatgaggcacttctgatatggcctggttctgtgttcccacccaaatctcatcttgaattgttatgcgaattgtaatccctacctattaggggagggaccacatgggag------gtgattg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6150285 259 +   6154872 TGAAAAATAATTAGATAAAAGAAGACTTTGATTTTCAAAAACCTGAAACAATAGTTATAA-TTtgcttttaacatatattcaaaatatttgatactgttcccttccagagg--catcttaatt-cctctcttgagtgtggcttggacttaatgagacacttctgatatggcctggttctgtgttcccacccaaatctcatcttgaattgttatgcgaattgtaacccctacctatt-ggggagggaccacatgggag------gtgattg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74717906 264 + 122973662 TGAAAAATAATTAGATAAAAGAAGACTTTGATTTTCAAAAACCTGAAACAATAGTTATAATTTTGCAtttaacatatattcaaatcctttaatactgttcccttccagaggtgcagcttaattccctctcttgagtgtggcttggacttaatgaggcacttctgatatggcctggttctgtgttcccacccaaatctcatcttgaattgtcatgtgaattgtaatccctacctattgggggagggacctcatgggag------gtgattg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30480962 264 + 172585720 TGAAAAATAATTAAATAAAAGAAGCCTTTGATTTTGAAAAACCAGAAACAATAGTTTTAATTTtgcttttaacatatattcaaatcctttgatactgttcccttccagagatgcagcttaattccctcgcttgagtgtggcttggacttaatgaggcacttctgatgtgtactggctctgtgttcccacccaaatctcatcctgaattgtcattcaaattgtactccctacctgttgggggagggaccacacgggag------gtgactg
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       87689 264 +   1495729 TGAAAAATAATTAGATAAAAGAAGCCTTTGATTTTGAAAAACCAGAAACAATAGTTTTAATTTtgcttttaacatatattcaaatcctttgacactgttcccctccagaggtgcagcttaattccctctcttgagtgtggcttggacttaatgaggcacttctgatacggcccagttctctgttcccacccaaatctcatcttgaattgtcattcgaattgtactccctacctactgggggagggacctcatgggag------atgattg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      142112 264 -    863181 TGAAAAATAATTAGATAAAACAAGCCTTTGATTTTCAAAAACCAGAAACAATAGTTTTAATTTtgcttttagtatatattcaaatcctttgatactgctcccttccagagatgcagcttaattccctcgcttgagtgtggcttggacttaatgaggcacttctgatatggcccagttctctgttcccacccaaatctcatctcgaattgtcattcgaattgtaatccctacctgttgggggagggaccacatgggag------gtgattg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29300833 264 -  71996105 TGAAAAATAATTAGATAAAAGAAGCCTTTGATTTTCAAAAACCAGAAACAATAGTTTTAATTTtgcttttaacatatattaaaatcctttgatactgttcccttccagaggtgcagcttaattccctctcttgcgtgtggcttggacttaatgaggcacttctgatatggcccagttctctgctcccacccaaatctcatcttgaattgtcattcgaattgtactccgtacctactgggggagggacctcatgggag------gtgattg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      136498 264 +    273075 tgaaaaataattagataaaagaagcctttgattttcaaaaaccagaaacaatagttttaattttgcttttagtatatattcaaatcctttgatactgctcccttccagagatgcagcttaattccctcgcttgagtgtggcttggacttaatgaggcacttctgatatggcccagttctctgttcccacccaaatctcatctcgaattgtcattcgaattgtaatccctacctgttgggggagggaccacatgggag------gtgattg
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       37808 264 -   1829203 TTAAAAATAATTAGATAAAAGAAGGCTTTGATTTTCAAAACCCTGAAACAATCATTATAATTTtgcttttaacatatattcaaatcctttgatactgttcccttccagagatgcagcttaattccctctcttgagtgtggcttggacttaatgatgcacttctgaTCCAGCCTGGCTctgtgttcgcacccaaatctcatcttgaattgtcattcaaattgtaatccctgtgtattgggggagggtcctcatgggag------gtcactg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30297658 253 + 171630274 AGAACAATAATTAGATAAAAGAAGGCTTTGATTTACAAAATCCTGAAATAATACTTTTAATTTT-----------------aaatcctttaatactgctcccttccaaaggtgcagcttacctccctctcttgagcgtggcttggacttaatgatgcacttctgatatggcctggctctgtgttcccacctgaatctcatcttgaattttcatgtgaattgtaatctcccaatattgagggaaaaaccacatgggagatgaatgtgattg
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1      474461 264 -   1771730 TAAAGAAAAATTAAATAAAAGAAGCTTTTGATTTACAAAATCCTGAAACAATACTTTTAATTTtgctttcaacatatatgcaaatcctttaatactgtttccttccagaggtgcagcttacttccctctcttgagtgtggcttggacttaacaacgtacttgtgatatggcctggctctgtgttcccacttaaatctcatcttgaattttcatgtgaattgtaatccccccatattcagggagggaccacacgggag------gtgattt
i cebCap1.NW_016107755v1   I 39 C 0
s aotNan1.NW_018496904v1      183863 245 -    383796 AGAACAATAATTAGATAAAAGAAGGCTTTGATTTACAAAATCCTGAAATAATACTTTTAATTTT-----------------aaatcctttaatactgctaccttccagaagtgcagcttacttccctctcttaaacatggcttggactt-atgatacacttctgatatggcctggctctgtgttcccacctgaatctcatcttgaattttcatgtgaattgtaatc-cccgatattgagggagggaccacatgggag------gtgattg
i aotNan1.NW_018496904v1   C 0 I 362
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             69812 7623 +    515838 I
e macFas5.chr4             141029073   0 + 170955103 I

a score=60201.000000
s hg38.chr6_GL000254v2_alt   1140810 12 +   4827813 gataatgggggc
s panTro5.chr6              30099273 12 + 175400573 gataatggtggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30329950 12 + 173848474 gataatgggggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6150544 11 +   6154872 ggtaatgg-ggc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74718170 12 + 122973662 gatcatggggac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30481226 12 + 172585720 gatcatggggac
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       87953 12 +   1495729 gatcatggggac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      142376 12 -    863181 gatcatagggac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29301097 12 -  71996105 gatcatggggac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      136762 12 +    273075 gatcatagggac
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       38072 12 -   1829203 gatcatggggac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30297911 12 + 171630274 catcatgaggac
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1      474725 12 -   1771730 gatcatgggggc
i cebCap1.NW_016107755v1   C 0 I 2481
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             69812 7623 +    515838 I
e aotNan1.NW_018496904v1      184108 362 -    383796 I
e macFas5.chr4             141029073  0 + 170955103 I

a score=24425.000000
s hg38.chr6_GL000254v2_alt   1140822 7 +   4827813 ggtgccc
s panTro5.chr6              30099285 7 + 175400573 ggtgccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30329962 7 + 173848474 ggggccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6150555 7 +   6154872 ggtgccc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74718182 7 + 122973662 agcaccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30481238 7 + 172585720 agttccc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       87965 7 +   1495729 agttccc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      142388 7 -    863181 gggtccc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29301109 7 -  71996105 agttccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      136774 7 +    273075 gggtccc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       38084 7 -   1829203 ggtgccc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30297923 7 + 171630274 agtttcc
i calJac3.chr4             C 0 I 7215
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             69812 7623 +    515838 I
e aotNan1.NW_018496904v1      184108 362 -    383796 I
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e macFas5.chr4             141029073 0 + 170955103 I

a score=101362.000000
s hg38.chr6_GL000254v2_alt   1140829 20 +   4827813 ccatgctgttctcgtgatac
s panTro5.chr6              30099292 20 + 175400573 gcatgctgttctcgtgatac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30329969 20 + 173848474 gcatgctgttctcgtgatac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6150562 19 +   6154872 -catgctgttctcatgatac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74718189 20 + 122973662 ccatgctgttctggtgatac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30481245 20 + 172585720 ccatgctgttctcatgatac
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       87972 20 +   1495729 ccatgctgttctcatgatac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      142395 20 -    863181 ccatgctgttctcatgatac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29301116 20 -  71996105 ccatgctattctcatgatac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      136781 20 +    273075 ccatgctgttctcatgatac
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       38091 20 -   1829203 ccatgctgctctcatgatat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30305145 20 + 171630274 ccatgctgttctaatgactg
i calJac3.chr4             I 7215 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             69812 7623 +    515838 I
e aotNan1.NW_018496904v1      184108 362 -    383796 I
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e macFas5.chr4             141029073  0 + 170955103 I

a score=85941.000000
s hg38.chr6_GL000254v2_alt   1140849 13 +   4827813 tgagggaattctc
s panTro5.chr6              30099312 13 + 175400573 tgagggaattctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30329989 13 + 173848474 tgagggaattctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6150581 13 +   6154872 tgagggaattctc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74718209 13 + 122973662 tgagggaattctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30481265 13 + 172585720 tgagggaattctc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       87992 13 +   1495729 tgagggaattctc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      142415 13 -    863181 tgagggaattctc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29301136 13 -  71996105 tgagggaattctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      136801 13 +    273075 tgagagaattctc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       38111 13 -   1829203 tgagggaatcctc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30305165 13 + 171630274 caagtgaattctc
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1      184470 13 -    383796 tgagtgaattctc
i aotNan1.NW_018496904v1   I 362 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             69812 7623 +    515838 I
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e macFas5.chr4             141029073  0 + 170955103 I

a score=208017.000000
s hg38.chr6_GL000254v2_alt   1140862 35 +   4827813 atgagatctgatggttttataaggggcttttccct-
s panTro5.chr6              30099325 35 + 175400573 atgagatctgatggttttataaggggcttttccct-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30330002 35 + 173848474 atgagatctgatggttttataaggggcttttccct-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6150594 35 +   6154872 atgagatctgatggttttataaggggcttttccct-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74718222 35 + 122973662 atgagatctgatggttttataaggggcttttccct-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30481278 35 + 172585720 atgagatgtgatggttctataagtggcatttccct-
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       88005 35 +   1495729 atgagatgtgatggttctataaggggcatttcccT-
i macNem1.NW_012012100v1   C 0 M 1353
s cerAty1.NW_012002535v1      142428 35 -    863181 atgagatgtgctggttctataaggggcatttccct-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29301149 35 -  71996105 atgagatgtgatggttctataaggggcatttccct-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      136814 35 +    273075 atgagatgtgctggttctataaggggcatttccct-
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       38124 35 -   1829203 ctgagatctgatggttttataaggggtgttttcct-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30305178 35 + 171630274 atgagatctgatagttttataaggggcttttcctc-
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1      184483 35 -    383796 acgagatccgatgattttataaggggcttttcccc-
i aotNan1.NW_018496904v1   C 0 I 42
s otoGar3.GL873550          17262688 30 -  18854210 gtaggatcaaatgg------aaggtatgttttcagt
i otoGar3.GL873550         N 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             69812 7623 +    515838 I
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e macFas5.chr4             141029073  0 + 170955103 I

a score=121463.000000
s hg38.chr6_GL000254v2_alt   1140897 31 +   4827813 gcttc---attctgcacttctctctcctg----tcatc
s panTro5.chr6              30099360 31 + 175400573 gcttc---attctgcatttctctctcctg----tcatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30330037 31 + 173848474 gcttc---attctgcatttctgtctcctg----tcatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6150629 31 +   6154872 gcttc---attgtgcatttctctctcctg----tcatc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74718257 31 + 122973662 gcttc---attctgcatttctctctcctg----ccacc
i nomLeu3.chr1a            C 0 I 871
s rheMac8.chr4              30481313 31 + 172585720 gcttc---attctgcatttctctctcctg----ccacc
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1      142463 31 -    863181 gcttc---gttctgcattcctctctcctg----ccacc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29301184 35 -  71996105 gcttc---attctgcatttctctctcctaccacccacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      136849 31 +    273075 gcttc---gttctgcattcctctctcctg----ccacc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       38159 31 -   1829203 gcttc---attctgcatttctgtctcctg----ccacc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30305213 30 + 171630274 -cttt---gctctgcatttctatctccta----ccacc
i calJac3.chr4             C 0 C 0
s otoGar3.GL873550          17262718 27 -  18854210 tctttaagattttccatacttctttac-----------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             69812 7623 +    515838 I
e aotNan1.NW_018496904v1      184518 42 -    383796 I
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=61036.000000
s hg38.chr6_GL000254v2_alt   1140928 15 +   4827813 atgtgaagaaggatg
s panTro5.chr6              30099391 15 + 175400573 atgtgaagaaggatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30330068 15 + 173848474 atgtgaagaaggatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6150660 15 +   6154872 atgtgaagaaggatg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74719159 15 + 122973662 atgtgaagaaggatg
i nomLeu3.chr1a            I 871 C 0
s rheMac8.chr4              30481344 15 + 172585720 atgtgaagaaggaca
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1      142494 15 -    863181 atgtgaagaaggacg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29301219 15 -  71996105 atgtgaagaaggagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      136880 15 +    273075 atgtgaagaaggacg
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       38190 15 -   1829203 atatgaagaaggacg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30305243 10 + 171630274 acatgaagaa-----
i calJac3.chr4             C 0 C 0
s otoGar3.GL873550          17262745 10 -  18854210 -----aaaaaggcta
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             69812 7623 +    515838 I
e aotNan1.NW_018496904v1      184518 42 -    383796 I
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=324543.000000
s hg38.chr6_GL000254v2_alt   1140943 61 +   4827813 tgtttgcttccacttctgccatgactgtaa----gtttcctggggcaggctcctcagccatgcag
s panTro5.chr6              30099406 61 + 175400573 tgtttgcttccacttctgccatgactgtaa----gtttcctggggcaggctcctcagccatgcag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30330083 61 + 173848474 tgtttgcttccacttctgccatgactgtaa----gtttcctggggcaggctcctcagtcatgcag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6150675 60 +   6154872 tgtttgcttccacttcggccatgactgtaa----gtttcct-gggcaggctcctcagccatgcag
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74719174 61 + 122973662 tgtttgcttccacttctgccgtgactgtaa----gtttcttggggcagcctcctcagccacacag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30481359 61 + 172585720 tgtttgcttccaattctgccatgactctaa----gtttcctggggcaggctcctcagcaatgcag
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1      142509 61 -    863181 tgcttgcttccacttctgccatgactctaa----gtttcctggggaaggctcctcagcaatgcag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29301234 61 -  71996105 tgtttgcttccgcttctgccatgactctaa----gtttcctggggcaggctcctcagcaatgcag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      136895 61 +    273075 tgcttgcttccacttctgccatgactctaa----gtttcctggggaaggctcctcagcaatgcag
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       38205 61 -   1829203 tgttcgcttccacttctgccacgactgtaa----ctttcctggggcaggctcctcagacatacag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30305253 61 + 171630274 tgtctgcttccacttctgccatgattgtaa----gtttcctggagcagccttttcagccatgcag
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1      184560 61 -    383796 tgtttgcttccacttgtgccatgattgtaa----gtttcctggagcaggcttctcagccatgcac
i aotNan1.NW_018496904v1   I 42 C 0
s otoGar3.GL873550          17262755 60 -  18854210 tattagtttgaagtcctaccaaaagtgtaagagtgtttcct-----tttctctacatccatgctg
i otoGar3.GL873550         C 0 I 159
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             69812 7623 +    515838 I
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=114542.000000
s hg38.chr6_GL000254v2_alt   1141004 28 +   4827813 aa-ctgtgagtcaattaaacctctttcct
s panTro5.chr6              30099467 28 + 175400573 ag-ctgtgagtcaattaaacctttttcct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30330144 28 + 173848474 aa-ctgtgagtcaattaaacttctttcct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6150735 29 +   6154872 gacctgtgagtcaattaaacctctttcct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74719235 28 + 122973662 aa-ctgtgagtcaattaaacctctttcct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30481420 28 + 172585720 aa-ctgtgagtcagttaaatctctttcct
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1      142570 28 -    863181 aa-ctgtgagtcagttaaacctctttcct
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29301295 24 -  71996105 aa-ctgtgagtcagttaaaac----tcct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      136956 28 +    273075 aa-ctgtgagtcagttaaacctctttcct
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       38266  8 -   1829203 aa-ctgtga--------------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30305314 28 + 171630274 aa-ctgtgagtcaagtaaacctctttcct
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1      184621 28 -    383796 aa-ctgtgagtcaattaaacctctttcct
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             69812 7623 +    515838 I
e otoGar3.GL873550          17262815 159 -  18854210 I
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=286141.000000
s hg38.chr6_GL000254v2_alt   1141032 46 +   4827813 ttataaattacccagtctcaggtatttcttcatagcagtgtgagaa
s panTro5.chr6              30099495 46 + 175400573 ttataaattactcagtctcagttatttctttatagcagtgtgagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30330172 46 + 173848474 ttataaattacccagtctcaggtatttctttatagcagtgtgagaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6150764 46 +   6154872 ttataaattactcagtctcaggtatttctttatagcagtgtgagaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74719263 46 + 122973662 ttataaattacccagtctcaggtatttctttatagcagtgtgagaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30481448 46 + 172585720 ttataaatcacccaatctcaggtatttctttatagcagtgtgagaa
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1      142598 46 -    863181 ttataaattacccagtctcaagtatttctttatagcagtgtgagaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29301319 46 -  71996105 ttataaatcacccaatctcaggtatttctttatagcaatgtgagaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      136984 46 +    273075 ttataaattacccagtctcaagtatttctttatagcagtgtgagaa
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       38274 31 -   1829203 ---------------tctcaggtatttctttatagcagtgtgagaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30305342 46 + 171630274 tgataaagaacccagtctcaggtatttctttatagcagtgtgagaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341             77435 46 +    515838 ttataaattactcagtctcaggtatttctttatagcagtgtgagaa
i saiBol1.JH378341         I 7623 C 0
s aotNan1.NW_018496904v1      184649 46 -    383796 tgataaataacccagtctcaggtatttctttacagcagtgtgagaa
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e otoGar3.GL873550          17262815 159 -  18854210 I
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=546617.000000
s hg38.chr6_GL000254v2_alt   1141078  92 +   4827813 tggactaat---ataacttctaactt--------atagaataatgctgacataatggtttgtaactctgggtgtagaacctaaaactca-ctgcggcttccacc
s panTro5.chr6              30099541  92 + 175400573 tggactaat---ataacttctaactt--------atagaataatgctgacataatggtttgtgactctgggtgtagaacctaaaactca-ctgcggcttccacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30330218  92 + 173848474 tggactaat---ataacttctaactt--------atagaataatgctgacataatggtttgtgactctgggtgtagaacctaaaactca-ctgtggcttccacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6150810  90 +   6154872 tggactaat---ataacttctaactt--------atag-atagtgccaacataacagtttgtgact-tgggtgtagaacctaaaactca-ctgcggttcccacc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74719309 100 + 122973662 tggactaaa---acaACTTCTAActtctaacaacatagaataatgctgacataacagtttgtgactctgggtgtagaacataaaactca-ctgcggcttccacc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30481494  92 + 172585720 tggactaat---acaActtctaactt--------atagaataatgctgacataacagtttgtgactttgtgtgtaaaacataaaactca-ctgcagcttccacc
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1      142644  92 -    863181 tggactaat---acaacttctaactt--------aaagaataatgctgacataacagtttgtaactttggctgtagaacataaaactca-ctgcagcttccacc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29301365  92 -  71996105 tggactaaa---gtaacttctaacgt--------acagaataatgctgacataacagtttgtgactttgggtatagaacacaaaactca-ctgcagcttccacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      137030  92 +    273075 tggactaat---acaacttctaactt--------aaagaataatgctgacataacagtttgtaactttggctgtagaacataaaactca-ctgcagcttccacc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       38305  92 -   1829203 tggactaac---acaacttctaactt--------acagaataatgctgacataacagtttgtgactctgggtgtagaacataaaactta-ctgtggcttccacc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30305388  88 + 171630274 ccagctaat---acaACTTCTAAC------------AGAGTAATCCTGACAGAACAGTTTGTGACTCTGGGTGTAGAACATAAAACTCA-CTGGGGCTTCCACC
i calJac3.chr4             C 0 I 26
s saiBol1.JH378341             77481  88 +    515838 tgagctaaG---GCAACTTCTAACTG--------ATAGAGTAATGATAACATAACAGTC----ACTCTGGGTGTAAAAGataaaagtca-ctgcggcttctact
i saiBol1.JH378341         C 0 I 2
s aotNan1.NW_018496904v1      184695  93 -    383796 ccagctaat---acaacttctaacag--------atagagtaatcctggcatagtcgtttgtgactctgggtgtagaacataaaactcacctggggcttctacc
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17262974  95 -  18854210 tggacttattggttcacttccaactg--------atagagcaatgagggtggaatattttgtgattctgggtgtaggacataaaattca-ctgtggcttccacc
i otoGar3.GL873550         I 159 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=46237.000000
s hg38.chr6_GL000254v2_alt   1141170 12 +   4827813 ----t--tctctctctct
s panTro5.chr6              30099633 12 + 175400573 ----t--tctctctctct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30330310 12 + 173848474 ----t--tctctctctct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6150900 12 +   6154872 ----t--tctctctctct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74719409 12 + 122973662 ----t--tctctctctct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30481586 12 + 172585720 ----t--tctctctctct
i rheMac8.chr4             C 0 I 2
s cerAty1.NW_012002535v1      142736 12 -    863181 ----t--tctctctctct
i cerAty1.NW_012002535v1   C 0 T 67171
s chlSab2.chr17             29301457 12 -  71996105 ----t--tctctctctct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      137122 14 +    273075 ----ttctctctctctct
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       38397 11 -   1829203 ----t--tctctctgtc-
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             77571 10 +    515838 ----c--tctctctct--
i saiBol1.JH378341         I 2 C 0
s aotNan1.NW_018496904v1      184788 10 -    383796 ----t--tctctctct--
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17263069 12 -  18854210 ttggt--tctcctt----
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e calJac3.chr4              30305476 26 + 171630274 I
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=381365.000000
s hg38.chr6_GL000254v2_alt   1141182 80 +   4827813 gtctctgggatcatgagctctgggggaagccagctgctgtgccacaagca-gccctgcaggaaggtccatgtggctgag-aa
s panTro5.chr6              30099645 80 + 175400573 gtctctgggatcatgagctctgggggaagccagctgctgtgccacaagca-gccctgcaggaaggtccatgtggctgag-aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30330322 80 + 173848474 gtctctgggatcgtgagctctgggggaagccagctgctgtgccacaagca-gccctgcaggaaggtccatgtggctgag-aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6150912 79 +   6154872 gtctct-ggatc-tgagctctgggggaaagccagtgctgtgccacaagcaggccctgcaggaa-gtccaagtggctgagaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74719421 80 + 122973662 gtctctgggatcatgagctctggggaaagccagctgctgtgccacaagca-gccctgcaggaaggtccatgtggctaag-aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30481600 80 + 172585720 atccgcgggaacatgagctctgggggaagccagctgctgtgccaaaagca-gccctgcaggaaagtccacgtgactgag-aa
i rheMac8.chr4             I 2 C 0
s chlSab2.chr17             29301469 80 -  71996105 gtctctgggatcatgagctctgggggaatccagctgctgtgccataagca-gccctgcaggaaggtccatgtgactgag-aa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      137136 80 +    273075 gtctctgggatcatgagctctgggggaatccagctgctgtgccataagca-gccctgcaggaaggtccatgtgactgag-aa
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       38408 79 -   1829203 -tctctgggatcatgagctctgggggaagccagctgctgtgccataagca-gccccgcaggaaggtgcatgtgactgag-aa
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             77581 80 +    515838 gtctctgggatcatgagctctggggaaagccagctgctgtcccataagct-accctgcaggaaggcccatgtggctaag-aa
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1      184798 80 -    383796 gtctctgggatcatgagctctggggaaagccagctgctgtcccataagca-gccctgcaggaaggtccatgtggctaag-aa
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17263081 78 -  18854210 ctctcttgcatcacatgctctgggg-aagccagctgctgtgtcacaagca-gccctgtggaaaagtccctgtgccagga-a-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e calJac3.chr4              30305476 26 + 171630274 I
e cerAty1.NW_012002535v1      142748 67171 -    863181 T
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=488565.000000
s hg38.chr6_GL000254v2_alt   1141262 87 +   4827813 ctgaggccttccgggaccagacaacaaagaactaggccttttccaacagccatgtgactgatccatgtttcatgtgaatcctcagcc
s panTro5.chr6              30099725 87 + 175400573 ctgaggccttctgggaccagacaacaaagaactaggccttttccaacagccatgtgactgatccatgtttcatgtgaatcctcagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30330402 87 + 173848474 ctgaggccttctgggaccagacaacaaagaactaggccttttccaacagccatgtgactgatccatgtttcatgtgaatcctcagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6150991 86 +   6154872 ctgaggccttctgggaccagacaacaaagaactaggcc-tttccaacagccatgtgactgatccatgtttcatgtgaatcctcagcc
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74719501 87 + 122973662 ctgaagccttctgggaacagacaacaaggaactaggccttttccaacagccatgtgactgatccatgtttcttgtgaatcctcagcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30481680 87 + 172585720 ctgaggccttctgggactagataacaaggaactaggccttttccaacagccatgtgactgatctgtctttcttgtgaatcctcaacc
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29301549 86 -  71996105 c-ggggccttctgggactagataacaagaaactaggccttttccaacagccatgtgactgatccatctttcttgtgaatcctgagcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      137216 87 +    273075 ctgaggccttctgggactagataacaaggaactaggccttttccaacagccatgtgactgatccatctttcttgtgaatcctcagcc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       38487 87 -   1829203 ctgaggccttctgggaacagacaacaaggaactaggcctttttcaacagccatgtgattgatccatgtttcttgtgaatcctcagcc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30305502 87 + 171630274 TTCaagccttgtgggaccagacaccaagaaactaggccttttccaacagccatgtgactgaaccatgtttcatgtaaatccccagtc
i calJac3.chr4             I 26 N 0
s saiBol1.JH378341             77661 87 +    515838 gtgaggacttctaaaaccagacaacaaggaactaggccttttccaacagccatgtgactgagccatgtttcgtgtgaattctcagcc
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1      184878 87 -    383796 ctcaagccttctgggaccagacaacaaggaactaggcctttttcaacagccatgtgactgagccatgtttcatgtgaatccccagcc
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17263159 76 -  18854210 ---------cttgtgaccagccaacaaggag-tgagatttcttcaacagccatatgagtgaaccacatttcatg-gactctccagcc
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e cerAty1.NW_012002535v1      142748 67171 -    863181 T
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=436529.000000
s hg38.chr6_GL000254v2_alt   1141349 91 +   4827813 ccagtgaagccctcagatgatgcagcccttggctgacaattggact-gcaaccttgtgagaggccccgagcaagaagcactcagggaaacct
s panTro5.chr6              30099812 91 + 175400573 ccagtgaagctctcagatgatgcagcccttggctgacaactggact-gcaaccttgtgagaggccccgagcaagaagcactcagggaaacct
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30330489 91 + 173848474 ccagtgaagccctcagatgatgcagcccttggctgacaactggact-gcaaccttgtgagaggccccgagcaagaagcactcagggaaacct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6151077 90 +   6154872 ccagtgaagccctcagatgatggagcccttggctgacaactggact-gcaaccttgtgagaggccccgagc-agaagcactcagggaaacct
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74719588 91 + 122973662 ccagtgtagccctcagatgatgcagcccttggctgacaactggact-gcaacctcgtgagaggccctgaggaggaagtattcagggaaacct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30481767 87 + 172585720 ccagtgaagccctcagatgatgcagccct----tgacaactggact-gcaatcttgtgagaggtcctgagccataagcactctgggaaactt
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29301635 91 -  71996105 ccagtgaagccctcagatgatgcagcccttgactgacaactggact-gcaaccttgtgagaggtcctgagccagaagcactcagggaaactt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      137303 91 +    273075 ccagtgaagccctcagatgaagcagcccttgactgacaactggact-gcaaccttgtgagaggtcctgagcgagaagcactcagggaaacct
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       38574 91 -   1829203 ccagtgaagccctcaaatggcgcagcccttggctgacaactggact-gcaaccttgtgagaggccctgagccagaagcactcaggaaaacct
i colAng1.NW_012115577v1   C 0 I 318
s saiBol1.JH378341             77748 91 +    515838 ccagagagacactcagatgatgcagccctcggctgacaactggact-acagccttgtgagaggaactgagccagaagcactcagggaaagat
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1      184965 91 -    383796 ccagtgaagccctcagatgatgcagcccttggctgacaactggact-gcagccttgtgagaggaactgagccagaagcactcagggaaacct
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17263235 83 -  18854210 --------acagtaagatgacacagccct-ggctgacaactggactcttaactttgggagaggctctgagctagaatatctcagggaaaacg
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e cerAty1.NW_012002535v1      142748 67171 -    863181 T
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=3133.000000
s hg38.chr6_GL000254v2_alt   1141440 1 +   4827813 c
s panTro5.chr6              30099903 1 + 175400573 c
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30330580 1 + 173848474 c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6151167 1 +   6154872 c
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74719679 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30481854 1 + 172585720 c
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29301726 1 -  71996105 c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      137394 1 +    273075 c
i manLeu1.NW_012101121v1   C 0 C 0
s saiBol1.JH378341             77839 1 +    515838 c
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1      185056 1 -    383796 c
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17263318 1 -  18854210 t
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e colAng1.NW_012115577v1       38665 318 -   1829203 I
e cerAty1.NW_012002535v1      142748 67171 -    863181 T
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073 0 + 170955103 I

a score=525779.000000
s hg38.chr6_GL000254v2_alt   1141441 127 +   4827813 tcctggactcctgaccattggaaactgtggcagatgaggaatatttgttgttttaa---gctaagttttacataatttgttatgcaatagtaaataaataacacaTTTTCACAAGAGAGGATGTATTATT
s panTro5.chr6              30099904 127 + 175400573 tcctggactcctgaccattggaaactgcggcagatgaggaatatttgttgttttga---gctaagttttacataatttgttatgcaatagtaaataaataatacaTTTTCACAAGAGAGGATGTATTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30330581 127 + 173848474 tcctggactcctgaccattggaaactgcggcagatgaggaatatttgttgttttga---gctaagttttacataatttgttatgcaatagtaaataaataatacaTTTTCACAAGAGAGGATGTATTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6151168 120 +   6154872 tcctggactcctga-cattggaaactgcggcagatga-gaatatttgtt-ttttga---gctaagttttacataa-ttgttatgcaatagtaaa-aaataataca-TTTCACAAGA-AGGATGTATTATT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74719680 127 + 122973662 tcctgggttcctaaccattggaaactgtgggagatgatgaatatttgttgttttga---gcaaagttttacataatttgttatgcaatagtaaataactaatacaTTTTCACAAGAGAGGATGTATTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30481855 127 + 172585720 tcctggattcctaagcattggaaactgtgggagatgatgaatatttattgttttga---gcttggtgttatataatttgttatgcaaccgtaaatacacaatacaTTTTCACAAGACAGGATGTATTATT
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29301727 123 -  71996105 tcctggattcttaaccattggaaaccgtgggagatgatgaatatttgtgtttttga---gctaagtgttacataattcattatgcaatc----ataaataaTACATTTTCACAACAGAGGATGTTTTATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      137395 127 +    273075 tcctggattcctaaccattggaaactgtgggagatgatgaatatttgttgttttga---gctaaattttatacaatttgttacacaatcgtaaataaacaatacaTTTTCACAAGACAGGATGTATTATT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       38983 127 -   1829203 tcctggatttctaaccatcggaaactgtgggacatgaggaatatctgctgttttga---gctaagttttacataatgtgttatgcaattgtaaataactaatacaTTTTCACAAAAGAGGATGTATTATT
i colAng1.NW_012115577v1   I 318 C 0
s saiBol1.JH378341             77840 130 +    515838 tcctgtgttcctgaccattggaaactgtgggggatgatgaatatctgttgtttcgagttgctatgtttcacataatttgttatgcaatagtaaataactagtaGATTTTCGCAAGAGAAGATGGATTATT
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1      185057 126 -    383796 tcctggattcctgaccattggaaacagtgggagatgatgaatatttgttgttttgggctgctacattttacataatttgttatgcaatagtaaataacta----atTTTCACAAGAGAGGATGTATTATT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17263319 129 -  18854210 tcctaggttcctgagtatcggtaagcatgggaaataataaatatttgtt-tttagaggtgctatgttttgggaaatctgttacacagcagcagataactaCAACAACTTCCACAGAGAGAATGAATTATT
i otoGar3.GL873550         C 0 N 0
e micMur3.chr6                240797 2210 + 123392446 T
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e cerAty1.NW_012002535v1      142748 67171 -    863181 T
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=1369576.000000
s hg38.chr6_GL000254v2_alt   1141568 346 +   4827813 ACACATTAAATTGCATTTGCTTTAAATGTATCATCGTCATCATTATTA-----------------------------tttttgagacatggtctcgctctgtcacccaggctggagtgcagtggcatgatcaccatgcactgcagtgtcgacctcctgggttcaagggacccactgatctcagcctcctgagtagctgggact--accatca-tgaactact-atgcctggctaattttctaa--ttttttgtatagatgggggtt--------ttgcccaggctgatcttgaacttctggagtcaacaaatctgccttcctctg--ccttccacagtgctagg-atggcaggcgtgagccaccatacctggcGTAAATtaattataagata
s panTro5.chr6              30100031 346 + 175400573 ACACATTAAATTGCATTTGCTTTAAATGGATCATCATCATCATTATTA-----------------------------tttttgagacacggtctcgctctgtcacccaggctggagtgcagtggcatgatcaccatgcactgaagtgtcgacctcctggggtcaagggacccactgatctcagcctcctgagtagctgggact--accgtca-tgaactact-atgcctggctaattttctaa--ttttttgtatagatgggggtt--------ttgcccaggctgatcttgaacttctggagtcaacaaatctgccttcctctg--ccttccacagtgctagg-atggcaggcgtgagccaccatacctggcGTAAATtaattataagata
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30330708 346 + 173848474 ACACATTAAATTGCATTTGCTTTAAATGTATCATCGTCATCATTATTA-----------------------------tttttgagacacggtctcgctctgtcacccaggctggagtgcagtggcatgatcaccatgcactgaagtgtcgacctcctggggtcaagggacccactgatctcagcctcctgagtagctgggact--accgtca-tgaactact-atgcctggctaattttctaa--ttttttgtatagatgggggtt--------ttgcccaggctgatcttgaacttctggagtcaacaaatctgccttcctctg--ccttccacagtgctagg-atggcaggcgtgagccaccatacctggcGTAAATtaattataagata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6151288 342 +   6154872 A-ACGTTAAA-TGCATTTGCTTTAAATGTATCATCGTCATCATTATTA-----------------------------tttttgagacacggtctcgctctgtcacccaggctggagtgcagtggcatgat---catgcactgcagtgtcgacctcctggggtcaagggacccactgatctcagcctcctgagta-ctgggactacaccgtca-t-aactactaatgcctggctaatttcc--a--atttttgtatagatgggggtt--------ttgcccaggctgatcttgaacttctggagtcaacaaatctgccttcctctgccccttccacagtgctaggaatggcaggcgt-agccaccatacctggcGTAAATtaattataagata
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74719807 354 + 122973662 ACACGTTAAATTGCATTTGCTCTAAATGTATCATCATCATTATTATTA-----------------------------tttttgagacagggtctcactctatcacccaggctggagtgcagtagcatgatcaccatgcactgcagtgtcaacctgctgggctcaagggaccctctgatctcagcatcctgagtagctgggact--acaggca-tgaaccacc-atgcctggctaattttctaa--ttttttgtagagatgggggttttgccatgttgcccaggctgatcttgaacttctggagtcaacaaatctgccttcctctt--ccttccacagtgctagg-atggcaggtgtgagccaccacacctggccTAAATtaattataagata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30481982 341 + 172585720 ACACGTTAAATTGCATTTGCTCCAAATGT---ATCATCATCATCATTA--------------------------------ttgagacaaggtcacactccgtaacccagtctggaatgtggtggcatgatcaccatgcactgcagtgtcaacctcctggggtcaagggaccctctgatctcagcctcctgagtagctgggact--acaggca-tgaaccacc-atgcctcactaattttctaa-tttctttgtagagatgggggtt--------ttgcccaggctgatcttgaacttctggagtcaacaaatctgccttcccctg--ccttccacagtgctagg-atagcaggcacgagccaccacatctggccTaaagtaattataagaca
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29301850 348 -  71996105 ACATGTTAAATTGCATTTGCTCTAAGTGTATCATCATCATCATTATTA-----------------------------tttttgagacaaggtctcactctgtcagccaggctggagtgcggtggcatgatcaccatgcactgtagtgtcgacctcctgggctcaagggaccctctgatctcagcctcctgagtagctgggact--acaggca-tgaaccgcc-aagcctgactaattttctaattttttttgtagagatgggggtt--------ttgcccaggctgatcttgaacttctggagtcaacaaatctgccttcctctg--ccttccacagtgctagg-atagcaggcgtcagccaccacatatggccTaaagtaattataagaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      137522 344 +    273075 ACACGTTAAATTGCATTTGCTCCAAATGT---ATCATCATCATTATTA-----------------------------tttttgagacaaggtcacactctgtaacccaggctggagtgcagtggcatgatcaccatgcactgcagtgtcgacttcctggcatcaagggaccctccgatcgcagtctcctgagtagctgggact--acaggca-tgaaccacc-atgcctgactaattttctaa-tatttttgtagagatgggggtt--------ttgcccaggctgatcttgaacttctggagtcaacaaatctgccttcccctg--ccttccacagtgctagg-atagcagtcatgagccaccacatctggccTaaagtaattataagaca
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       39110 379 -   1829203 ACATGTTAAATTGCATTTGCTCTAAATTT---ATCATCATCATTATTAtttttttttttttttcttcatcattattatttttgagacagggtctcactctgtcacccaggctggagtgcagtggcatgatcaccatgcactgcagtgtcgacctcctggggtcaagggaccctgtgatctcagcctcctaagtagctgggact--acaggca-tgaaccacc-atgcctggctaattttctaa--ttttttgtagagatggggttt-caccatgttgcccaggcttctcttgaacttctagaatcaagaaatctgccttcctctg--ccttccacagtcgtagg-attgcaggcgtgagccactacacctggcTTAAATtaattctaagata
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             77970 353 +    515838 ACACATTAATTTGTATGTGCTCCAAATTTGTCCTCATCAATCTTATTA-----------------------------tttttgagacagtgt--ctctctgtcacccatgatggaatgtagtagcatgatcaccatgaactccagtgccgacctcctgggctcaaggggtcctctgacctcagcctcctgagtcgctgggatg--acagtca-tgaaccacc-atgcctggctaattttctaa-ttttttggcagagatgggggtttgaccatgtttcccaggcggatcttgaacttctggagtcaatggatccaccttcctctg--ccttccacagtggtaaa-attgcaggcatgagccaccacacctgtccTAAATTAATTGTAAGGTA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1      185183 356 -    383796 ACACATTAATTTGCGTTTGCTCTAAATTTACCAACATCGTTATTATTA-----------------------------tttttgagacaaggtcacactctgtcacccaggctggagtgcagtagcatgatcaccaggcacggcattgtcgacctcctgggctcaaggaatcctgtgacctcagcctcctgagtatcttggact--acaagcagtgaaccacc-atgtctggctaattttctaa-tttttttgtagagatgggggtttaaccatgtttcccaggctgatcttgaacttctggagccaacaaatctgccttcctctg--ctttccaccatgctagg-attgcaggcgtgagccaacacaccaggccTAAATtaactataagata
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e cerAty1.NW_012002535v1      142748 67171 -    863181 T
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=1142018.000000
s hg38.chr6_GL000254v2_alt   1141914 224 +   4827813 ttaaacatgtaacttagtttt-aaaaggtaaggagaattt-ccatggctgaagaggatgtattttatgaccattcacaatgatcactttacttgaacttcaatttccaactgtgtccgaagt-aaacacaaaaggaagaTCCAACCCTtgctaggctgattctattat-gccctcaacaaccagctcctggtcattcaccatcctccagttattcaatcaactctaat
s panTro5.chr6              30100377 224 + 175400573 ttaaacatgtaacttagtttt-aaaaggtaaggagaattt-ccatggctgaagaggatgtattttatgaccattcacaatgatcactttacttgaacttcaatttccaactgtgtccgaagt-aaacacaaaaggaagaTCCAACCCTtgctaggctgattctattat-gccctcaacaaccagctcctggtcattcaccatcctccagttattcaatcaactctaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30331054 224 + 173848474 ttaaacatgtaacttagtttt-aaaaggtaaggagaattt-ccatggctgaagaggatgtattttatgaccattcacaatgatcactttacttgaacttcaatttccaactgtgtccgaagt-aaacacaaaaggaagaTCCAACCCTtgctaggctgattctattat-gccctcaacaaccagctcctggtcattcaccatcctccagttattcaatcaactctaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6151630 224 +   6154872 ttaaacatgtaacttagttttaaaaaggtaaggagaatttcccatggctgaa-aggttgtattttatgacc-ttcacaatgatcactttacttgaacttcaatttccaactgtgtccgaagtaaaacacaaaagaaagaTCCAACCCTtgctaggctgattctattat-gccctcaacaaccagct-ctggtcattcaccttcctccagttattcaatcaactctaat
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74720161 224 + 122973662 ttaaacttgtaacttagtttt-aaaaggtaaggagaattt-ccatggctgaaaaggatgtatttgatgaccattcacaatgatcactttacttgaacttcaatttccaactgtgtcctaatt-aaacacaaaTTGAAGATTCTACCCTtgctaggctgattctatgat-ggcctcaacaaccagctcctggtcattcaccttcctccagttactcaatcaactctaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30482323 224 + 172585720 ttaaacatgtaacttagtttt-aaaaggtaaggagaattt-ccatggccgaagaggatgtagtttaatatcgtttacaatgatcactttacttgaacttcaatttccaactgtgtcgcaatt-aaacacaaaaggaagaTCCAACCCTtgctaggctgattctatgat-ggccccaacagccagctcgtggtcattcaccttctcccagtgattcaaccaactctaat
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1       75577 224 -    863181 ttaaacatgtaacttagtttt-aaaaggtaaggagaatgt-ccatggctgaagaggatgtattttgttactgttcacaatgatcactttactacaacttcaatttccaactgtgttccaata-aaacacaaaaggaagaCCCAACCCTtgctaggctgactctacgat-ggcctcaacaaccaactcctggtcattcaccttcctccagttattcagccaactctaat
i cerAty1.NW_012002535v1   T 67171 C 0
s chlSab2.chr17             29302198 224 -  71996105 ttaaacacgtgacttagtttt-aaaaggtaaggagaattt-ccatggccgaagaggatgtagtttaatatcgttcgcaatgatcactttacctgaacttcaatttccaactgtgtcccaatt-aaacacaaaaggaagaTCCAAACCTtgctaggctgattctatgat-ggccccaacagccagctcctggtcattcaccttcccccagtgattcaaccaactctaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      137866 224 +    273075 ttaaacatgtaacttagtttt-aaaaggtaaggagaattt-ccatggccgaagaagatatagtttaataccgttcacaatgatcactttacttgaacttcaatttcctactgtgtcgcaatt-aaacacaaaaggaagaTCCAACGCTtgctaggctgattctatgat-ggccccaacagccagctcctggccattcaccttctcccagtgattcaaccaactctaat
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       39489 224 -   1829203 ttaaacatgtaacttagtttt-aaaaggtaaggagaattt-ccatggctgaaaaggatgtattttatgaccattcacaatgatcactttacttgaacttcaatttccaagtatgtcccaatt-aaacacaaaacgaagaTTCAACCCTtgctagacagattctatcat-ggcctcaacaacaagctcctggtcattcaccttcccctagttattcaaccaactctaat
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             78323 224 +    515838 CTAAATATATAACTTAGTTGT-AAAAGTTAAGGAGATTTC-CCATGGCTGAAGAGGATATATTTTGTTACTGTTCACAATGATCAGTTTACTTGAACTTCAATTTCCAAGTGTGTCTCAATT-AAACACAAAAGGAAGATCCAATCCTtgctaggctgattctatgat-acccccaacaaccacctcctggtcattcacctcaccccagttattcagccaactctaat
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1      185539 224 -    383796 ttaaacatgtaacttaattgt-aaaaggtaaggagaattt-ccatggctgaagaggatgtattttattaccgttcacaatgatcgctttacttgaacttcaatttccaactgtgtc-caatt-aaacacaaaaggaagaTCCAACCCTtgctaggctgattctatcatggcccccaacaaccacctcctggtcattcactttcccctagttattcaaccaactctaat
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=1067417.000000
s hg38.chr6_GL000254v2_alt   1142138 207 +   4827813 gtaggtgctgctgtgaagggagttagtggatataattaagggtctcaattagttgactttaggctgggtttatcctgcttggactgtcctaatcaggtgagaccttgaaaggactgggttcttc-ctgagc-atagagactcacagtgtgagagggactcagcatgaggggtttcctccagcatgggc-tttgaaaatgaaagggctgtg
s panTro5.chr6              30100601 207 + 175400573 gtaggtgctgctgtgaagggagttagtggatataattaagggtctcaattagttgactttaggctgggtttatcctgcttggactgtcctaatcaggtgagaccttgaaaggactgggttcttc-ctgagc-atagagactcacagtgtgagagggactcagcatgaggggtttcctccagcatgggc-tttgaaaatgaaagggctgtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30331278 207 + 173848474 gtaggtgctgctgtgaagggagttagtggatataattaagggtctcaattagttgactttaggctgggtttatcctgcttggactgtcctaatcaggtgagaccttgaaaggactgggttcttc-ctgagc-atagagactcacagtgtgagagggactcagcatgaggggtttcctccagcatgggc-tttgaaaatgaaagggctgtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6151854 209 +   6154872 gta-gtgctgctgtgaagggagttagtggatataattaagggtctcaattagttgactttaggctgggtttatcctgcttggactgtcctaatcaggtgagaccttgaaagactggggttcttcactgagcaatagagactcacagtgtgagagggactcagcatgaggggtttcctccagcatgggcttttgaaaatgaaagggctgtg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74720385 207 + 122973662 ataggtgctgttgtgaaaggatttagcagatataattaagggcctcaattagttgactttaggctaggtttatcctgcttggactgtcctaatcaggtgagcccttgaaaggacagggttcttc-ctgaac-atagagattcacagtgtgagagggactcagtatgaggggtttcctccaccatgggg-tttgaaaatgaaggggctgtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30482547 207 + 172585720 gtaggtgccgctgtgaagggatttagcagatacaattaaggggctcaattagttgactttaggctgggtttctcctgcttggactgttctaatcaggtgagcccttgaaaggactgggttcttc-ctgagc-atagagaaatgcagtgtgagaggcattcagcatgaggggtttcctccaccgtgggc-tttgaaaatgaaggggctatg
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1       75801 206 -    863181 gtaggtgctgctgtgaagagatttagcagatataattaagggcctcaattagttgactttaggc-gggtttatcctgcttggactgtcctaatcaggtgagcccttgaaacgaccggcttcttc-ctgagc-atagagattcacaatgtgagagggattcagcatgaggggttttctccactgtgggc-tttgaaaatgaagaggctgtg
i cerAty1.NW_012002535v1   C 0 I 68303
s chlSab2.chr17             42819286 207 +  71996105 gtaggtgctgctgtgaagggatttagcagatataattaagcgcctcaattagttgactttaggctggatttctcctgcttggactgtcctaatcaggtgagcccttgaaaggaccaggttcttc-ctgagc-atagagattcacagtgtgaaaaggattcagcatgaggggtttcctccaccgtgggc-tttgaaaatgaagaggctatg
i chlSab2.chr17            n 0 C 0
s manLeu1.NW_012101121v1      138090 207 +    273075 gtaggtgctgctgtgaagagatttagcagatataattaaggggctcaattagttgactttaggcttagtttctcctgcttggactgtcctaatcaggtgagcccttgaaaggactgggttcttc-ttgagc-acagagaaatgcagtgtgagagggattcagcatgaggggttttctccaccatgggc-tttgaaaatgaagaggctacg
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       39713 207 -   1829203 gtaggtgctgctatgaagaggtttagcagacataattaagggcctcaattagttgactttaagctgggtttatcctgtttgcactgtcctaatcaggtgagcccttgaaaggactggattattc-ctgagc-atagagttccacagtgtgagaggcactcagcatgaggggtttcctccaacatgggg-tttgaaaatgaaaggTCTGTG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             78547 205 +    515838 gtaggtgctgttgtgaagggattcagcagacataattaagggcctcaattagttgactttaggctgggtttatcctgctgggactgtcctaattaggtgagcccttaaaaggactgggttctcc-ctgagc-atagagattcaca--gtgagagggattcagcgtgaggggtttccttcactgtgggc-tttgaaaatgaaggggctgtg
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1      185763 203 -    383796 gtaggtgctgctgtgaaggg----aacagacataattaagggcatcaattagttgactttagtctgggtttatcctgcttgcactgttctaatcagctgagcccttgaaaagacagggttctcc-ctgagc-atagagattcacagtgtgagagggattcagcatgaggggtttcctccactgtgggc-tttgaaaatgaaggggctgtg
i aotNan1.NW_018496904v1   C 0 I 627
e micMur3.chr6                240797 2210 + 123392446 T
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=7821.000000
s hg38.chr6_GL000254v2_alt   1142345 2 +   4827813 gg
s panTro5.chr6              30100808 2 + 175400573 gg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30331485 2 + 173848474 gg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6152063 2 +   6154872 gg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74720592 2 + 122973662 gg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30482754 2 + 172585720 gg
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             42819493 2 +  71996105 gg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      138297 2 +    273075 gg
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       39920 2 -   1829203 GG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             78752 2 +    515838 ag
i saiBol1.JH378341         C 0 I 2902
e micMur3.chr6                240797 2210 + 123392446 T
e aotNan1.NW_018496904v1      185966 627 -    383796 I
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e cerAty1.NW_012002535v1       76007 68303 -    863181 I
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073 0 + 170955103 I

a score=250849.000000
s hg38.chr6_GL000254v2_alt   1142347 99 +   4827813 ccgggtgcggtgcctcacgcctgtaatcccagcactttgggaggctgaggcgggcggatcatgaggtcaggagatcgagaccatcctggctaacatggt
s panTro5.chr6              30100810 99 + 175400573 ccgggtgtggtggctcacgcctgtaatcccagcactttgggagggtgaggcgggaggatcacgaggtcaggagatcgagaccatcctggctaacacggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30331487 99 + 173848474 ccgggtgtggtggctcacgcctgtaatcccagcactttgggagggtgaggcgggaggatcatgaggtcaggagatcgagaccatcctggctaacacggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6152065 95 +   6154872 ccaggtgcggtggctcacgcctgtaatcccagcactttggaaagccgaggcagcggaatcacga-gtcagaa---tcagaccagtctggctaacacggt
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74720594 99 + 122973662 ccaggcatggtggctcatgcctgtaatcacagcactttgggaggccgaggtgggtggatcacgaggtcaggagatccagaccatcctgtctaacatggt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30482756 99 + 172585720 ccaggtgtggtggttcacgcctgtaatcccagcactttgggaggccgaggtaggcggaacaagaggtcaggagatcaaggccatcctggctatcacggt
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             42819495 99 +  71996105 ccgggtgcggtggttcacgcctgtaatcccagtactttgggaggctgaggcaggcagatcaagaggtcaggagatcaaggccctcctgaataacacggt
i chlSab2.chr17            C 0 I 27479
s manLeu1.NW_012101121v1      138299 99 +    273075 ccaggtgaggtagttcacgcttgtaatcccagcactttgggaggccgaggcaggaggatcaagaggtcaggagatcaaggccatcctggctaacacggt
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       39922 95 -   1829203 ACAAgtgtggtggctgacacctgtaatcacagcactttgggaggccaaggtgggtg----acgaggtcaggagatcgagaccatcctggctaacacggt
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e aotNan1.NW_018496904v1      185966 627 -    383796 I
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e cerAty1.NW_012002535v1       76007 68303 -    863181 I
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=332206.000000
s hg38.chr6_GL000254v2_alt   1142446 214 +   4827813 gaaaccctgtctctactaagaatacaaaaa-------------------aaaaaaaaaaa-----------------------------attagccaagcgtagtggtgggtgcctgtagt-cccagctgc-ttgggaggctgagacaggagaatggcgtgaacctgggagccatagctggcagt-gagccgagatccggccactgcacccaag-cctgggctacagagcaagactccatctcc-aaaaaataaataaataaa------------------------------------------------------ataa----
s panTro5.chr6              30100909 211 + 175400573 gaaaccctgtctctactaagaatacaaaaa-------------------aaaaaaaaa--------------------------------ttagccaagcgtagtagcaggtgcctgtagt-cccagctgc-ttgggaggctgagacaggagaatggcgtgaacccgggagccatagctggcagt-gagccgagatccggccactgcacccaag-cctgggctacagagcgagactccatctcc-aaaaaataaataaataaa------------------------------------------------------ataa----
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30331586 209 + 173848474 gaaaccctgtctctactaagaatacaaaaa-------------------aaaaaa-----------------------------------ttagccaagcatagtagcaggtgcctgtagt-cccagctgc-ttgggaggctgagacaggagaatggcgtgaacccgggagccatagctggcagt-gagccgagatccggccactgcacccaag-cctgggctacagagcgagactccatctccaaaaaaataaataaataaa------------------------------------------------------ataa----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6152160 212 +   6154872 gaaaccatgtct-tactaagaatacaaaaa-------------------aaagaaaaaa-------------------------------ttagccaagcatagttgtgggtgcctgtagtccccagctgctttgggaggctgagacaggagaaatgcgtgaaccc--gagccatagctggcagtggagccgagatccggccactgcacccaagccctgggctaca-agcgagactccgtctca-aaaaaaataataaataaa------------------------------------------------------ataa----
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74720693 248 + 122973662 gaaaccttgtttctactaaaaatactatat-------------------atatatatatatatatatatatatatatatatatatatatattagccaaacgtagtggcaggcacctgtagt-cccagctac-ctgggaggctgcgacagaagaatggcatgaaactgggaggcggagcttgcagt-gagctgagatcgcgccactgcactctag-cctgggtgacagaggaagactccgtttcaaaaaaaaaaaagagagaaa------------------------------------------------------agaaaatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30482855 208 + 172585720 gaaaccctgtctctactaaaaatacaaaaa-------------------aagaaaaaaaaaa----------------------------ttagccaagcatagtggtgggcaccagtagt-cccagctac-ttgggaggctgagacaggagaatggcatgaaccagagaggtggagcttgcagt-gagctgagaacacaccactgcactccag-cctgggctacagagtgagactctgcc----aaaaaaaaaaaaaaaaaa--------------------------------------------------------------
i rheMac8.chr4             C 0 C 0
s manLeu1.NW_012101121v1      138398 210 +    273075 gaaaccctgtctctactaaaaatacaaaaa-----------------atatgtgtatatata----------------------------ttagccaagcatagtggtgggcacctgtagt-cccagctac-ttgggaggctgagacaggagaatggcatgaaccagggaggtggagcttgcagt-gagccgagattgcaccactgcactccag-cctgggctacagagcgagactctgcc----aaaaaaaaaaaaaaaaaa--------------------------------------------------------------
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       40017 288 -   1829203 gaaaccctgcctcttctaaaaatacaaaaaaaaaaaaagaaagaaagaaaagaaaaaacaaa----------------------------ttagccaagcatagtggtaggtgcccatagt-cccagccac-ctgggaggctgagacaggagaatggcgacaacctgggagacggagcttgtggt-gagcttagataacactactgcactctag-cctgggtgacagagcgagactctgtctca-aaaaagaaaagaaagaaaGAGAGAgagggagggagggagggagggagggaggAGAAAAGAAAAGAAGGAAGGAAAg----
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e aotNan1.NW_018496904v1      185966 627 -    383796 I
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e chlSab2.chr17             42819594 27479 +  71996105 I
e cerAty1.NW_012002535v1       76007 68303 -    863181 I
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=81804.000000
s hg38.chr6_GL000254v2_alt   1142660 38 +   4827813 aaaatgaaggggctgtgtaggaaag---aatgctggtgagg
s panTro5.chr6              30101120 38 + 175400573 aaaatgaaggggctgtgtaggaaag---aatgctggtgagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30331795 38 + 173848474 aaaatgaaggggctgtgtaggaaag---aatgctggtgagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6152372 37 +   6154872 aaaatgaa-gggctgtgtaggaaag---aatgctggtgagg
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74720941 38 + 122973662 aaaatgaagggattgtgtaggaaag---aatgctggtgagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30483063 38 + 172585720 aaaagaaggggcctgtgtaggaaag---aatgctggtgaac
i rheMac8.chr4             C 0 C 0
s manLeu1.NW_012101121v1      138608 33 +    273075 -----gagggggctgtgtaggaaag---aacgctggtgaat
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       40305 41 -   1829203 aaaatgaaagggctgtgtaggaaagaacaacactgatgagc
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550          17149116 38 -  18854210 aaagtggagagttcctgtggcaaag---aatgttgggggca
i otoGar3.GL873550         N 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e aotNan1.NW_018496904v1      185966 627 -    383796 I
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e chlSab2.chr17             42819594 27479 +  71996105 I
e cerAty1.NW_012002535v1       76007 68303 -    863181 I
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=612230.000000
s hg38.chr6_GL000254v2_alt   1142698 209 +   4827813 accaggaatcgagcacagccctccctgttctctacattgacagccagcaaggaacag----ggacctcagtcttacaactgcc----agaaactgcattctgcc----acctctgtataagcctgaaggagga-------ttcaaaatgaaaacacagctttt-ggaagcccagaagagagattccatccacaattttgcccagatttctgatcaaggaactataagca
s panTro5.chr6              30101158 208 + 175400573 accaggaatcgagcacagccctccctgttctctacattgacagccagcaaggaacag----ggacctcagtcttacaactgcc----agaaactgcattctgcc----acctctgtataagtctgaaggagga-------ttcaaaatgaaaacacagctttt-ggaagcccagaagagagattccatccaca-ttttgcccagatttctgatcaaggaactataagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30331833 207 + 173848474 accaggaatcgagcacagccctccctgttctctacattgacagccagcaaggaacag----ggacctcagtc-tacaactgcc----agaaactgcattctgcc----acctctgtataagcctgaaggagga-------ttcaaaatgaaaacacagctttt-ggaagcccagaagagagattccatccaca-ttttgcccagatttctgatcaaggaactataagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6152409 201 +   6154872 ac--aggatcgagca-agccc-ccctgttctctacattgacagccagcaa-gaacag----ggacctcagtcttacaactgcc----agaaactgcattctgcc----acctctgtataagcct-aagtagga-------ttcaaaatgaaaacacagcttttgggaagcccaga--agaaattctatccaca-ttttgcccagatttctgatcaaggaactataagca
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74720979 208 + 122973662 accaggaagtgagcacagccttccctgttctctacattgacagccagcaaggaacag----ggacctcagtcttacaactgcc----agaaactgcattctgcc----acctctgtgtaagcctgaaggagga-------ttcaaaatgataacacagctttt-ggaagcccagaacagagattctatccaca-tcttgcccagatttctgaccaaggaactataaaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30483101 207 + 172585720 accaggaattcagcgcag-cctccttgttctctacattgacaaccagcaaggaacag----ggaattcggtcttacaactgta----agaaactgcattctgcc----acctctgtataaacctgaaggagga-------ttccaaatgaaaacacagctttt-ggaagcccaggacagagattctatccaca-tcttgcccagatttctgactaaggaacaagaaaca
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1      144310 208 -    863181 Accaggaattgagcgcagccctccccattctctatattgacagccagcaaggaacag----ggacttcggtcttacaactgta----agaaactgcattctgcc----acctctgtataaacctgaaggagga-------ttccaaatgcaaacacagctttt-ggaagcccagaacagagattctctccaca-tcttgtccaaatttctgaccaaggaactagaagca
i cerAty1.NW_012002535v1   I 68303 C 0
s manLeu1.NW_012101121v1      138641 208 +    273075 accaggaattgagcgcagccctccccattctctatattgacagccagcaaggaacag----ggacttcggtcttacaactgta----agaaactgcattctgcc----acctctgtataaacctgaaggagga-------ttccaaatgcaaacacagctttt-ggaagcccagaacagagattctatccaca-tcttgtccaaatttctgaccaaggaactagaagca
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       40346 206 -   1829203 accaggaattgagcacagccctccctgttctctacattgacagccagcaaggaacag----ggacctcagtcttaaaactgcc----agaaactggattctgcc----acctctgtataagactgaacgagga-------ttcaaaatgaaa--acagctttt-ggaagcccagaacagacattctatccaca-tcttgcccagatttctgaccaaggaactagaagcg
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550          17149154 198 -  18854210 -----------------gccataacccctgtcagttctgacaggtaatca--aacagggatggaccacagtcctgcaacttccagaaagaaaccaaattctgcccatagtctccatgtaagcatagggaaggaccccaacctcaagatgagggcatggctttg-tgaaaccctgaactgaga----------a-ccatgcctggatttctgactaaggagcactaaaca
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e aotNan1.NW_018496904v1      185966 627 -    383796 I
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e chlSab2.chr17             42819594 27479 +  71996105 I
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=75576.000000
s hg38.chr6_GL000254v2_alt   1142907 18 +   4827813 gataaatgggtgttgttt
s panTro5.chr6              30101366 18 + 175400573 gataaatgggtgttgttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30332040 18 + 173848474 gataaatgggtgttgttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6152610 18 +   6154872 gataaatgtgtgttgttC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74721187 18 + 122973662 gataaatgggtgttgttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30483308 18 + 172585720 gataaatgggtgttgttt
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1      144518 18 -    863181 cataaatgggtgttgttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29302422 18 -  71996105 GATAAATGGGTGTTGTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      138849 18 +    273075 cataaatgggtgttgttt
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       40552 18 -   1829203 gatatatgggtgttgttt
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550          17149352 18 -  18854210 aataaatgacccttgttt
i otoGar3.GL873550         C 0 I 91
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e aotNan1.NW_018496904v1      185966 627 -    383796 I
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=22576.000000
s hg38.chr6_GL000254v2_alt   1142925 9 +   4827813 CGCCAGGCA
s panTro5.chr6              30101384 9 + 175400573 caCCAGGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30332058 9 + 173848474 caCCAGGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6152628 9 +   6154872 GCCCAGGCG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74721205 9 + 122973662 tGCCAGGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30483326 9 + 172585720 CGCCAGGGG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1      144536 9 -    863181 caCCAGGGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29302440 9 -  71996105 CGCTAGGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      138867 9 +    273075 caCCAGGGG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       40570 9 -   1829203 caCCAGGCG
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e otoGar3.GL873550          17149370 91 -  18854210 I
e aotNan1.NW_018496904v1      185966 627 -    383796 I
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e macNem1.NW_012012100v1       88040 1353 +   1495729 M
e macFas5.chr4             141029073 0 + 170955103 I

a score=42826.000000
s hg38.chr6_GL000254v2_alt   1142934 11 +   4827813 TGGTAGTG-CAC
s panTro5.chr6              30101393 11 + 175400573 TGGTAGTG-CAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30332067 11 + 173848474 TGGTAGTG-CAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6152637 12 +   6154872 TGGTAGTGCCAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74721214 11 + 122973662 TGGTAGTG-CAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30483335 11 + 172585720 TGGTAGTG-CAC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       89398 11 +   1495729 TGGTAGTA-CAT
i macNem1.NW_012012100v1   M 1353 C 0
s cerAty1.NW_012002535v1      144545 11 -    863181 TGGTAGAG-CAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29302449 11 -  71996105 TGGTAGCA-CAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      138876 11 +    273075 TGGTAGAG-CAC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       40579 11 -   1829203 TGGTAGTG-CAT
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e otoGar3.GL873550          17149370 91 -  18854210 I
e aotNan1.NW_018496904v1      185966 627 -    383796 I
e cebCap1.NW_016107755v1      474737 2481 -   1771730 I
e macFas5.chr4             141029073  0 + 170955103 I

a score=2816725.000000
s hg38.chr6_GL000254v2_alt   1142945 448 +   4827813 GAATGAATTGATGAATTGATATGCACACTAGTTACA-TAAAATAAAAATTTTCTGAACTTTTTCCGTGTTTTGCACTTTA-TAATTATCTG-TAATGCAA-TTTAATACACTCATATTTCattcattcagtcgac-aaaaattaatttagtccctacgataaaccagatAT-CCCCT------------------------------------------CATATGCTCACGTGCCTGACACTCCAGAAGTTTCTCAAGACCgaggtggagacactggagtgttttaagtggagagatgacacactccgactCCCAGGAGCAG------GACCACTGT-GAAAAGAACAGTCAC--GTAACAGGTCATGGGACAGTGCTAGTGTCACAACTCACAAGTGACAGTGTGGTGGGGACTAA--GGGGACAGGAGGGCCTGAAGGATGAAAAGGACGGAGAGAAGGGCTGGAGAAGCAGGAGGTGAAGAAAAGGAGCAGA-GGA---------------------------------------------------------------------------AAGAATTCG
s panTro5.chr6              30101404 448 + 175400573 GAATGAATTGATGAATTGATATGCACACTAGTTACA-TAAAATAAAATTTTTCTGAACTTTTTCTGTGTTTTGCACTTTA-TAATTATCTG-TAATGCAA-TCTAATACACTCATATTTCATTCATTCAGTCGAC-AAAAATTAATTTAGTCCCTATGATAAACCAGATAT-CCCCT------------------------------------------CATATGCTCACGTGCCTGACACTCCAGAAGTTTCTCAAGACCAaggtggagacactggagtgttttaagtggagagatgacacactctgactCCCAGGAGCAG------GACCACTGT-GAAAAGAACAGTCGC--GTAACAGGTCATGGGACAGTGCTAGTGTCACAATTCACAAGTGACAGTGTGGTGGGGACTAA--GGGGACAGGAGGGCCTGAAGGATGAGAAGGATGGAGGGAAGGGCTGGAGAAGCAGGAGGTGAAGAAAAGGAGCAGA-GGA---------------------------------------------------------------------------AAGAATTCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30332078 448 + 173848474 GAATGAATTGATGAATTGATATGCACACTAGTTACA-TAAAATAAAATTTTTCTGAACTTTTTCTGTGTTTTGCACTTTA-TAATTATCTG-TAATGCAA-TTTAATACACTCATATTTCATTCATTCAGTTGAC-AAAAATTAATTTAGTCCCTATGATAAACCAGATAT-CCCCT------------------------------------------CATATGCTCACGTGCCTGACACTCCAGAAGTTTCTCAAGACCAaggtggagacactggagtgttttaagtggagagatgacacactctgactCCCAGGAGCAG------GACCACTGT-GAAAAGAACAGTCAC--GTAACAGGTCATGGGACAGTGCTAGTGTCACAATTCACAAGTGACAGTGTGGTGGGGACTAA--GGGGACAGGAGGGCCTGAAGGATGAGAAGGACGGAGGGAAGGGCTGGAGAAGCAGGAGGTGAAGAAAAGGAGCAGA-GGA---------------------------------------------------------------------------AAGAATTCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6152649 450 +   6154872 gaatgaattaatgaattgatatgcacactagttacattaaaataaaatctttctgaactttttcagtgttttacagtttattAATTACCTG-TGATGCAA-TTTAATACACTCATA-TTCATTCATTCAGTCAACAAAAAATTAACTTAGTCCCTACAATGAACCAGGTATCCCCCT------------------------------------------CATATGCTCACGTGCCTGACACTCCAGAAGCTTCTCGAGACCCGAGGTGagccacgggagtgttttaagtggagagatgacacactccgactcaCAGGAGCAG------GACCACTGT-GAAAAAAACAGTCAC--GTAACAGGTCATGGGACAGTGCTAGTGTCACAATTCACAAGTGACAGTGTG--GGGGACTAAAGGGGGACAGGAGGGCCTGAAGGATGAGAAGGATGGAG-GAAGGGTTGGAGAAGCAGGAGGTGAAGAAAAGGAGCAGA-GGA---------------------------------------------------------------------------AAGAATTCG
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74721225 445 + 122973662 AAATGAATTGATGAATTGATATATACACTAGTTGCA-CAAAATAAAATCTTTCTGAACTTGTTCAGTGTTTTACATTTTA-TAATTATCTG-TGATGCAA-TTTAATACACTCGCATTTCattcattcagtcaac-aaaaattaatttagtccctacaatgaaccaggtAT-CCCCT------------------------------------------CATATGCTCACGTGCCTGACACT---GAAGCTTCACAAGACCgaggtggagacactggagtgttttaagtggagaaatgatacactctaactcaCAGGAGCAG------GAACACTGT-GGAGAGAACAGTCAC--GTAGCAGATCATGGGACGGTGCTAGTGTCACAATTCACGAGTGATAGTGTGGTGGGGACTAC--GGGGAGAGGAGGGCCTCAAGGATGAGAGGGACGGAGGGAAGGCCTAGAGAAGCAGGGGGTGAGGAAAAGGAGCAGA-GGA---------------------------------------------------------------------------AAGAATTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30483346 448 + 172585720 gaatgaattgatgaattgatatgcacactagttaca-taaaataaaatctttctgaactttttcagtgttttacacttta-taattatctg-tgatgtaa-tttaatacactcatatttcattcattaaGTCAAC-AAAAATTAATTTAGTTCCTATGATGAACCAGGTAT-CCCTT------------------------------------------CATATGCTCACGTGCCTGACACTCCAGAAGCTTCACAAGACCgaggtggagccactggagtgttttaagtggagaaatgacacactctgactgacaggagcag------gaccactgt-gaagagaacagtcac--gtagcaggtcatgggacagtgctagtgtcacaattcacgagtgacagtgtggtggggactaa--ggggacaggagggtctgaaggatgagaggGACTGAGGGAAGGGCTGGAGAAGGGGGCGCTGAGGAAAAGGACCAGA-GGA---------------------------------------------------------------------------AAGAATTCG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       89409 448 +   1495729 gaatgaattgatgaattgatatgcacactagttaca-taaaataaaatctttctgaacttttTCAGTGTTTTACACTTTA-TAATTATCTG-AGATGCAA-TTTAATACACTTATATTTCattcactaagtcaac-aaaaattaatttagtgcccatgatgaaccaggtAT-GCCTT------------------------------------------CATATTCTCACGTGCCTGACACTCCAGAAGTTTCACAAGACCgaggtggagacaccagagtgttttaggtggagaaatgacacactctgactGACAGGAGCAG------GACCACTGT-GAAGACAATACTCAC--GTAGCAGGTCATGGGACAGTGCTAGTGTCACAATTCATGAGTGATAGTGTGGTGGGGACTAA--GGGGAGAGGAGGGTCTGAAGGATGAGAGGGACTGAGGGAAGGGCTGGAGAAGCAGGCGGTGAGGAAAAGGAGCAGA-GGA---------------------------------------------------------------------------AAGAATTCG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      144556 449 -    863181 GAATGAATTGATGAATTGATATGCACACTAGTTACA-TAAAATAAAATCTTTCTGAACTTTTTCAGTGTTTTACACTTTA-TAATTATCTG-TGATGCAA-TTTAATACACTCATATTTCattcattcagtcaac-aaaaatgaatttagtgcctatgatgaaccaggtAT-CCCTT------------------------------------------CATATACTCACGTGCCTGACACTCCAGAAGTTTCCCAAGACCgaggtggagacactggagtgttttaggtggagaaatgacacactctgactGACAGGAGCGG------GACCACTGT-GAAGAGGACAGTCAC--ATAGCAGGTCATGGGACAGTGCTACTGTCACAATTCACGAATGACAGTGCGGTGGGGACTAA-GGGGGAGAGGAGGGTCTGAAGAATGAGAGGGACTGAGGGAAGGGCTGGAGAAGCAGACGGTGAGGAAAAGGAGCAGA-GGA---------------------------------------------------------------------------AAGAATTCG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29302460 443 -  71996105 GAATGAATTGATGAATTGATATGCACACTAGTTACA-TAAAATAAAATCTTTCTGAACTTTTTCAGTGTTTTACAC-TTA-TAATTATCTG-AGATGCAA-TTTAATACACTCATATTTCattcattaagtcaac-aaaaattaatttagcgcccatgatgaaccaggtAT-CCCTT------------------------------------------CATATGCTCACCCACCTGACACTCCAGAAGTTTCACAAGACCGAAGTGGAGACACCAGAGTGTTTCAAGGGGAGAAATGACACACT----CTGACAGGAGCAG------GACCACTGT-GAAGAGAACAGTCAC--GTAGCAGGTCATGGGACAGTGCTAGTGTCACAATTCACGGGTGACAGTGTGGTGGGGACTAA--GGGAAGAGGAGGGTCTGAAGGATGAGAGGGACTGAGGGAAGGGCTGGAGAAGCAGGCGGTGAGGCAAAGGAGCAGA-GGA---------------------------------------------------------------------------AAGAATTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      138887 449 +    273075 gaatgaattgatgaattgatatgcacactagttaca-taaaataaaatctttctgaactttttcagtgttttacacttta-taattatctg-tgatgcaa-tttaatacactcatatttcattcattcagtcaac-aaaaatgaatttagtgcctatgatgaaccaggtAT-CCCTT------------------------------------------CATATACTCACGTGCCTGACACTCCAGAAGTTTCCCAAGACCgaggtggagacactggagtgttttaagtggagaaatgacacactctgactGACAGGAGCGG------GACCACTGT-GAAGAGGACAGTCAC--ATAGCAGGTCATGGGACAGTGCTACTGTCACAATTCACGAATGACAGTGCGGTGGGGACTAA-GGGGGAGAGGAGGGTCTGAAGAATGAGAGGGACTGAGGGAAGGGCTGGAGAAGCAGACGGTGAGGAAAAGGAGCAGA-GGA---------------------------------------------------------------------------AAGAATTCG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       40590 443 -   1829203 GAATGAACTGATGAATTGATATGCACACTAGTTACA-TAAAATA-----TTTCTGAACTTTTTCAGTGTTTTACAATTTA-TAATTATCTG-TGATGCAA-TTTAATACACTCATATTTCATTCATTAAGTCAAC-AAAAATGAATTTAGTCCCTACGAAGAACCAGGTAT-CCCTT------------------------------------------CATATGTTCATGTGCCTGACATTCTAGAAGCTTCACAAGACTGAGATGGAGCCACTGGAATGTTTTAGGTGGAGAAATGACACACTGTGACTCACAGGAGCAG------GACCACTGT-GGAGAGAACAGTCAC--GTAGCAGGTCATGGGACAGTGCTAGTGTCACAATTCAGGAGTGACAGTGTGATGGGGACTAA--GGAGAGAGGAGGGTCTGAAGGATGAGAGGGACTGAGGGAAGGACTGGAGAAGCAGGAGGTGAGGAAAAAGAGCAGA-GGA---------------------------------------------------------------------------AATAATTCA
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1      477218 444 -   1771730 gaatgaattcatgaattgatatgcacaccagttac------ataaaatctgtcttaactttctcagtgttttacattttg-taattttctg-tggtccat-ttTAGCCCACTCATGTTTCAAtcactcagtcaac-aaaaattaatttagtgcctacactgaaccaggtAT-GCCCT------------------------------------------CATATATTCATGTACCTGACATTCTAGAAGCTTCGCAAGACGgaggtggagccactggagtgttttatgtggagaaatgacacattctgacggacagtagcag------gaccactgt-ggAGAGAACAGTCAT--GTAGCAGGTAATGGGACAGTGCTAGAGCCACTATTCAGGAGTGACAGAGTGGTGGGGAATAA--AGggagaggaagggcttagggatgagagggatggagggaagggctggagaagcaggaggtgaggagaaggagcagaggGA---------------------------------------------------------------------------AAGAATTCG
i cebCap1.NW_016107755v1   I 2481 C 0
s aotNan1.NW_018496904v1      186593 449 -    383796 gaatgaattgatgaattgatatacacactaaataca-taaaataaaatcttgcttaacgttttcagtgttttatattttg-taattttctg-tggtgcat-tttaatacactcatatttTAATCATTCAGTAAAC-AAAAATTAATTTAGTGCCTACACTAAACCAGGTAT-GCCGT------------------------------------------CACTTGCACACTTGCCTGACATTCTAGAAGCTTCACAAGACCGAAGTGGAGACACTGGAGTTTTTTACAGGGAGAAATGAGACACTCTGACTCACAGTAGCAG------GACCACTGT-GGAGAGAACAGTCAC--ATAGCAGGAAATGGGACAGTGCTAGAGTCACTATTCAGGAGTGACAGGTTGATGGGGTCTAA--GGGGAGAGAAGGGCCTGAGGGATGAGAGAGATGGAGGGAAGGGCTGGAGAAGCAAGAGGTGAGGAAAAGGAGCAGAGGGA---------------------------------------------------------------------------AGGAATTCA
i aotNan1.NW_018496904v1   I 627 C 0
s otoGar3.GL873550          17149461 566 -  18854210 gaatgaatttataaactgatatgca-ATTGCTTGCA-AGAAAGAAAGTATCTTCTAACTCTTTTAGTATGTTTAAGTCTA-TGATTTACAGTTGATTCAATTTTACTGTAACCATattcc-----ttcatccaac-aataattaatttagt-cctattatgtaccaggtat-gcctttccatgctggggatacaattttgacccaaccagcccaaagcccctgtgctcatgtgctttattttccagaggCTTTACAAGAATGAGATGAACCTATTGGAGCATTTTAACTGAAAAAATGACAGAATCTAACTCTCAGCACCAGTCTGTTGACCACTGTGGGGGAGAACAGTTCTGGGCAGTAGGTGAGGGGACAAGGCTAGCACCACATTGCAGGAGTGAGAG-GTGAT-GAGACTAA--GGGGAGA-AAGGGTCTGAGGGGTGAGAGGGACAGAGGGAAGGGCTGGAGAAGCAGGAGGTGAGGAACAGGAGCAGA-GGGAAAGAGTTGTTAAGGGTctcacactgagtccctttcttcctgtcaatctggtgctcaggaagaacccagtcttttaagaattca
i otoGar3.GL873550         I 91 I 163
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e macFas5.chr4             141029073   0 + 170955103 I

a score=2882665.000000
s hg38.chr6_GL000254v2_alt   1143393 470 +   4827813 AAAGCAGCAGAATTCTTAGGTTTAAATACATTGTTTTATGGA--TTTTAATACATCCATCTACAGAGCCTAGCAGGGTGTCCTT-GGCAGTTGGCCTTTAATACCTCATGTGGGTCTGCCT-AAAAACTAAT--T---TTTTAATGTTAATCAGGTTTAAAAATTACTAAGTGTTCCTATAAAATATACACAACACTTAGCAGTGGAT-ACTTC-CTAAAAACAGGCAGTGCATGAGCACTAGTGAGGGGCATTGCGACTACATTGAACAGTTGCAACTTTGAGGTGAATAAAGCCTGTACTGACTCCTGGTTGCAACGTACCTGGTTGCAAAGTACACAGTGTGCTACTTTGTATTGAGGAGATATCCTGGACTCACA--CAGAAACTCAGAGCTATGGAATGATGGCAAATTTAAAATATGACAAGCGGGAGTCACAGGTACA-----CT----GCAAAAGTGAAACTTAGAAGCTTTGTGAGTCCTGTT
s panTro5.chr6              30101852 470 + 175400573 AAAGCAGCAGAATTCTTAGGTTTAAATACATTGTTTTATGGA--TTTTAATACATCCATCTACAGAGCCTAGCAGGATGTCCTT-GGCAGTTGGCCTTTAATACTTTATGTGAGTCTGCCT-AAAAACTAAC--T---TTTTAATGTTAATCAGGTTTAAAAATTACTAAGTGTTCCTATAAAATATACACAACACTTAGCAGTGGAT-ACTTC-CTAAAAACATGCAGTGCATGAGCACTAGTGAGGGGCATTGTGACTACATTGAACAGTTGCAACTTTGAGGTGAATAAAGCCTGTACTGACTCCTGGTTGCAACGTACCTGGTTGCAAAGTACACGGTGTGCTACTTTGTATTGAGGAAATATCCTGGACTCACA--CAGAAACTCAGAGCTATGGAATGATGGCAAATTTAAAATATGACAAGCGGGAGTCACAGGTACA-----CC----GCAAAAGTGAAACTTACAAGCTTTGTGAGTCCTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30332526 470 + 173848474 AAAGCAGCAGAATTCTTAGGTTTAAATACATTGTTTTATGGA--TTTTAATACATCCATCTACAGAGCCTAGCAGGATGTCCTT-GGCAGTTGGCCTTTAATACTTTATGTGAGTCTGCCT-AAAAACTAAC--T---TTTTAATGTTAATCAGGTTTAAAAATTACTAAGTGTTCCTATAAAATATACACAACACTTAGCAGTGGAT-ACTTC-CTAAAAACATGCAGTGCATGAGCACTAGTGAGGGGCATTGTGACTACATTGAACAGTTGCAACTTTGAGGTGAATAAAGCCTGTACTGACTCCTGGTTGCAACGTACCTGGTTGCAAAGTACACGGTGTGCTACTTTGTATTGAGGAAATATCCTGGACTCACA--CAGAAACTCAGAGCTATGGAATGATGGCAAATTTAAAATATGACAAGCGGGAGTCACAGGTACA-----CC----GCAAAAGTGAAACTTAGAAGCTTTGTGAGTCCTGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6153099 463 +   6154872 AAAGCAGCAGAATTCTTAGGTTTAAATACATTG-TTTATGGA--TTTTAATA-ATCCATCTACAGAGCCTAGCAGGGTGTCCTTGGGCAGTTGGCCTTTAATACTTTATGTGGGTCTGCCTAAAAAACCAAC--T---TTTTAATGTTAATCAGGTTTAAAAATTACTAAGTGTTCCTATAAAATATACACAACACTTAGAAGTGGATAACTTCACTAAAAACAGGCAGTGCATGAGCACTAGTGAGGGGCATTGTGACTGCATTGAACAGTTGCAACTTTGAGGTGGATAAAG-CTGTACTGACTCCTGGTTGCAACGTAC---------AGTAACACAGTGTGCTACTTTGTATTGAGGAGATATCCTGGACTCACA--CAGAAACTCAGAGCTATGGAATGATGGCAAATTTAAAATATGACAAGCGGGAGTCACAGGTACA-----CTG---GCAAAAGTGAAACTTAGAAGTTTTGTGAGTCCTGTT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74721670 466 + 122973662 AAAGCAGCAGAATTCTTAGGTTTAAATACGTTGTTTTATGGA--TTTTAATACATCCATCTACAGAGTTTCGCAGGGTGTCCTT-GACAGTTGGTCTTTAATACCTTATGTGGGTCTGCCT-AAAATTTAATCGT---TTTTTATGTTAATCAGGTTTAAAAAATACTAAGTGTTCCTATAAAATATACACAACACTTAGAAGTGGAT-ACTTC-CTAAAAACAGGCAGTGCATGAGCACTAGTGACGGGCATTGTGACTGCATTGAACAGTTGCAACTTTGAGGTGAATAAAGTCTGTAATGGCTCCTGGTTGCAACATAT---------AGTAACACAGTG-GCTACTTTGTATTGAGGAGATGTCCTGGACTCACA--CAGAATCTCAGGGCTGTGGAATGATGGTAAATTTAAAATACGACAAGCAGGAGTCACAGATACA-----TTGTCTGGGAAAGTGAAACTTAGTAGCTTTGTGAGTCCTGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30483794 463 + 172585720 AAAGCAGCAGAATTCTTAGGTTTCAATACATTGTTTTATGGA--TTTTAATACATCCATCTACAGAGCCTAGCAGGGTGTCCTT-GGCAGTTGGCCTTTAATACCTTATGTGGGTC-GCCT-AAAAACTAAT--TG--TTTTTATGTTAATCGAGTTTTAAAAATACTAAGTGTTCCTATAAAATATACACAACACGTAGAAGTGCAT-ACTTC-CTGAAAACAGGCAGTGCATGAGCACTGGTGTGGGGCATTGTGACTGCACTGAACAGTTGCAACTGTGAGGTGAAT--AGTCTGTACTGGCTCCTGGTTGCAACATAC---------AGTAACACAGTGTGCTACTTTGTATTGAGGAAATATCCTGGACTCACA--CAGAAACTCAGAGCTATGGAGTGATAGTAAATTTAAAATACGACAAGTGGGAGTCACAGACACA-----TTGTTTGCGAAAGTGAAATTTAGGAGCTTTGTGAGTCCTGTT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       89857 463 +   1495729 AAAGTAGCAGAATTCTTAGGTTTCAATACATTGTTTTATGGA--TTTTAATATATCCATCTACAGAACCTAGCAAGGTGTCCTT-GGCAGTTGGCCTTTACTACCTTATGTGGGTCGGCCT-AAAAACTAAT--TG--TTTTTATGTTAATCGGGTTTTAAAAATATTAAGTGTTCCTATAAAAT-TATAGAACACGTACAAGTGGAT-ACTTC-CCGAAAACAGGCAGTGCATGAGCACTGGTGAGGGGCATTGTGACTGCATTGAACAGTTACAACTGTGAGGTGAAT--AGTCTGTACTGGCTCCTGGTTGCAACATAT---------AATAACACAGTGTGCTACTTTGTATTGAGGAAATATCCTGGACTCACA--CAGAAACTCAGAGCCATGGAATGATGGTACATTTAAAATACGACAAGTGGGAGTCACAGATACA-----TTATTTGCAAAAGTGAAATTTAGGAGCTTTGTGAGTCCTGTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      145005 463 -    863181 AAAGCAGCAGAATTCTTAGATTTCAATACATtgttttatgga--tttcaatatatccatctacagagcctagcagggtgtcctt-ggcagttggcctttaataCCTCATGTGGGTCTGCCT-AAAAACTAAT--GG--TTTTTATGTTAATCAGGTTTTAAAAATACTAAGCGTTCCTATAAAATATACAGAACACGTAGAAGTGGAT-ACTTC-CTGAAAACAGGCAGTGC-TGAGCACTGGTGAGGGGCACTGTGACTGCATTGAACAGTTGCAACTGTGAGGTGAAT--AGTCTGTACTGGCTCCTGGTTGCAACATAT---------AGTAACACAGTGTGCTACTTTGTATTGAGGAAATATCCTGGACTCACA--TAGAAACTCAGTGCTATGGAATGATGGTAAATTTAAAATACGACCAGCGGGAGTCACAGATACA-----TTGTTTGTGAAAGTGAAATTTAGGAGTTTTGTGAGTCCTGTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29302903 464 -  71996105 AAAGCAGCAGAATTCTTAGGTTTCAATACATTGTTTTATGGA--TTTTAATATATCCATCTACAGAGCCTAGCAGAGTGTCCTT-GGCAGTTGGTCTTTACTACCTTATGTGGGTCTGCCT-AAAAACTAAT--TG--TTTTTATGTTAATCGGGTTTTAAAAATACTAAGTGTTCCTGTAAAATATACACAACACGTAGAAATGGAT-ACTTC-CTGAAAACAGGCAGCGCATGAGCACTGGTGAGGGGCATTGTGACTGCATTGAACAGATGCAACTGTGAGGTAAAT--AGTCTGTACTGGCTCATGGTTGCAACATAT---------AGTAACACAGTGTGCTACTTTGTATTGAGGAAATATCCTGGACTCACA--CAGAAACTCAGAGCTATGGAATGATGGTACATTTAAAATACGAGAAGCGGGAGTCACAGATACA-----TTGTTTGCGAAAGTGAAATTTAGGAGCTTTGTGAGTCCTGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      139336 463 +    273075 AAAGCAGCAGAATTCTTAGATTTCAATACATtgttttatgga--tttcaatatatccatctacagagcctagcagggtgtcctt-ggcagttggcctttaataCCTCATGTGGGTCTGCCT-AAAAACTAAT--GG--TTTTTATGTTAATCAGGTTTTAAAAATACTAAGCGTTCCTATAAAATATACAGAACACGTAGAAGTGGAT-ACTTC-CTGAAAACAGGCAGTGC-TGAGCACTGGTGAGGGGCACTGTGACTGCATTGAACAGTTGCAACTGTGAGGTGAAT--AGTCTGTACTGGCTCCTGGTTGCAACATAT---------AGTAACACAGTGTGCTACTTTGTATTGAGGAAATATCCTGGACTCACA--TAGAAACTCAGTGCTATGGAATGATGGTAAATTTAAAATACGACCAGCGGGAGTCACAGATACA-----TTGTTTGTGAAAGTGAAATTTAGGAGTTTTGTGAGTCCTGTT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       41033 464 -   1829203 AAAACAGCAGAATTCTTAGGTTTAAACACATTGTTTGATGGA--TTTTAAtatatccatctacagagcctagcagggtgtcctt-ggcagttggcctttaataTCTTACCTGGGTCTGCCT-AAAAACTAAT--TG--TTTCTATGTTAATCGGGTTTTAAAAATACTAAGTGTTCCTATAAAATATACACAACACGTAGAAGTGGAT-ACTTC-CTAAAAACAGGCAGTGCCTGAGCACTGGTGAGGGGCATTGTGACTGCATTGAACAGTTGCAACTGTGAGGTGAAT--AGTCTGTACTGGCTCCTGGTTGCAACATAT---------AGTAACATAGTGTGCTACTTTGTATTGAGGAGATATCCTGGACTCACA--CAGAAATTCAGAGCTATGGAGTGATGGTAAATTTAAAATACAACAAGCGGGAGTCACAGATACA-----TTGTTTGCGAAAGTGAAATTTAGGAGCTTTGTGAGTCCTGTT
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1      477662 466 -   1771730 AAGGCAGCAGAATTCTCAGGTTTAAACACATTGTTTTATAGA-TTTTTAATACACCCAACTACAGAGCTTCTCAGGGTGTTCTT-TGCAGTTGGCCTTTAATATCTTATGTAGGTCTGCCT-AAAAACTAAT--TG-TTGCTTATGTTAATCAGCTTTAGAAAATGCTAAGTGTTCCTGTAAAATAAACACCCCACTTAGATGTGGAC-ACTTT-CTAAAAACAGGCAGTGCATGAGCACTGGTGAGGGGCATTGTGGCTGCACTGAACACTTGCGGCTGTGAGGTGAATGAAGTCTGTACTGGTTCCTGTTTGCAACATAC---------AGTAACACAGTGTG-TACTTTGTACT---GAGATGTCCTGGATTCACA--GGGAAACTCAGGTCTACGGAGTG-AGGTAAATTTAAAATACAACAAGCGGGGGTCACAGATACATTACGTTGTCTGGGAAAGTGAAAC--AGGAGCTTTGTGAGTCCTGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      187042 460 -    383796 AAAGCAACAGAATTCTTAGGTTTAAGCACATTGTTTTATAGA-TTTTTAATACATCCATCTACAGAGCCTAGCAGGGTGTTCTT-TGCAGTTGGGCTTTAATACCTTATGTAGGTCTGCCT-AAAAACTGAT--TG-TTTCTTATGTTTATCAGGTTTAAAAAATACTAACTGTTCCTATAAAATAAACACACCACTTAGATGTGGCT-ACTTC-CTAAAAACAGGCAGTGCATGAGCACTGGTGAGGGGCATTGTGACTGCATTGAACACTTGCGACTGTGAAGTGAATGAAGTCTGTACTGGCTCCTGGTTGCAACATAT----------GTAACACAGTGTGCTACTTTGAG-----GAGACGTCCTGGACTCACA--CAGAAACTCAGGACTTTGGCATGAAGGTAAATTTAAAATACAACAAGTGGGAGTCACAGATACA-----TTTTCTGGGAAAGGGAAAC--AGGAGCTTTATGAGTCCTGTT
i aotNan1.NW_018496904v1   C 0 I 52
s otoGar3.GL873550          17150190 437 -  18854210 gaatCAGCTGAATTCTCAGATTTACATACAGTGTTTTATAGATTTTTTAATA----------CAGAGCCCAGCAGGGTGCTCTT-TGCATTTGGTAATTAACATATT-TGTGGGGATGCCT-AAGAGCTGAT--TGCCTCCTAATG-TGATCAGGACATCAAAAT-------GTCCCTCCAAAATATGCACACGGCTCAGATGTGAAT-AATTC-ATAAAAACAGGCAGTGCCTGAGCACTAGAGAAGGGGATTTTGAC-----TGAGCACGTGCAGCTTTGAAATGATTAAAGTCC-TAC-AACTCCTGGCTGAAAAGCAC---------AGTAACAAGTTGTGTTTCTTTGTATGAATGAGATGTCTTGAACTCACAAGTACAGACTAAG-GCTATGGAATGAAGATAATTTTAAAATACAACAACGCAGAGTCCAAGATACA-----TAGTCCAGAAAAGTAAAAC--------TTGGTGAGTCTAACT
i otoGar3.GL873550         I 163 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e macFas5.chr4             141029073   0 + 170955103 I

a score=26334.000000
s hg38.chr6_GL000254v2_alt   1143863 5 +   4827813 CTAAC
s panTro5.chr6              30102322 5 + 175400573 GTAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30332996 5 + 173848474 GTAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6153562 4 +   6154872 -TAAC
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74722136 5 + 122973662 GTAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30484257 5 + 172585720 GTAAC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       90320 5 +   1495729 GTAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      145468 5 -    863181 GTAAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29303367 5 -  71996105 GTAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      139799 5 +    273075 GTAAC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       41497 5 -   1829203 GTAAC
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1      478128 5 -   1771730 GTTAT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550          17150627 5 -  18854210 GTAAT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e aotNan1.NW_018496904v1      187502 52 -    383796 I
e macFas5.chr4             141029073 0 + 170955103 I

a score=718169.000000
s hg38.chr6_GL000254v2_alt   1143868 113 +   4827813 GCTTTTGGGCACATTTATACATCATGGGGCCAAAGTCACATTTTTTACCGATTAGATTC-CTGATCATTCAGGGGTTACCAAGGTTCTGCTATCCAATGTATTTaat-aaacaaa
s panTro5.chr6              30102327 113 + 175400573 GCTTTTGGGCACATTTATACATCATGGGGCCAAAGTCACATTTTTTACCGATTAGATTC-CTGATCATTCAGGGGTTACCAAGGTTCTGCTATCCAATGTATTTaat-aaacaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30333001 113 + 173848474 GCTTTTGGGCACATTTATACATCATGGGGCCAAAGTCACATTTTTTACCGATTAGATTC-CTGATCATTCAGGGGTTACCAAGGTTCTGCTATCCAATGTATTTaat-aaacaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6153566 112 +   6154872 GC-TTTGGGCACATTTATACATCATGGGGCCAAAGTCACA-TTTTTACCTATTAGATTCACTGATCATTCAGGGGTTACCAA-GTTCTGCTATCCAATGTATTTaataaaacaaa
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74722141 113 + 122973662 GCTTTTGGACACATTTATACATCAAGGGGCCAAAGTCACATTTTTTACCTATTAGAGTC-CTGATCATTCAGGGATTACCAAGATTCTGCTACCCAATGTATTTAAT-AAACAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30484262 112 + 172585720 GCTTTTGGACACATTTATAAATCAAGGGACC-AAGTCATATTTTTTACCGATTAGATTC-CTGATCATTCGGGGGTTACCAAGATTCTATTACCCAATATATTTAAT-AAACAAA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       90325 113 +   1495729 GCTTTTGGACACATTTATAAATCAAGGGACCAAAGTCACATTTTTTACCGATTAGATTC-CTGATCATTCGAGGGTTACCAAGATTCTACTACCCAATATATTTAAT-AAACAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      145473 113 -    863181 ACTTTTGCACACATTTATAAATCAAGGGACCAAAGTCACATTTTTTACCGACTAGATTC-CCGATGATTCGGGGGTTACCAAGATTCTACAACCCAATGTATTTAAT-AAACAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29303372 113 -  71996105 GCTTTTGGACACATTTATAAATCAAGGGACCAAAGTCACATTTTTTACCGATTAGATTC-CTGATCATTCGGGCGTTGCCAAGATTTTACTACCCAATATATTTAAC-AAACAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      139804 113 +    273075 ACTTTTGCACACATTTATAAATCAAGGGACCAAAGTCACATTTTTTACCGACTAGATTC-CCGATCATTCGGGGGTTACCAAGATTCTACAACCCAATGTATTTAAT-AAACAAA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       41502 113 -   1829203 CCTTTTGGACACATTTATAAATCAAGGGGTCAAAGTCACATTTTTTACCGATTAGATTC-CTGATCATTCGGGGATTACCAAGATTCCACTACTCAATGTATTTAAT-AAACAAA
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1      478133 111 -   1771730 GCTTTTAGACACATTTATATATGAA-GGGCCAAA-TCACAGTTTTTGCCAATTAGGTTC-CCGATTATTCAGGAGTTGTCAAGATTCTGCTACCCACTGTAGTTAAT-AAACAGA
i cebCap1.NW_016107755v1   C 0 I 70
s aotNan1.NW_018496904v1      187554 113 -    383796 GCTTTTAGACACATTTATATATCAACGGGCCAAAGTCACATTTTTTATCGATTAAATTC-CTGATCATTCAGGGGTTACCAAGATTCTGCTACCCACTGTAGTTAAT-AAACAAA
i aotNan1.NW_018496904v1   I 52 C 0
s otoGar3.GL873550          17150632 113 -  18854210 GAGTTCAGACACATTAATCTATCAAGAGGCCAACATCACTTCTGTTACAGATTAGATTC-CTGACCATTCCGGGGTTACCAAGATTGTGCTACCTATTCTAGCTAAT-AAGCAAG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e macFas5.chr4             141029073   0 + 170955103 I

a score=276865.000000
s hg38.chr6_GL000254v2_alt   1143981 82 +   4827813 taaataaataaaCTGGTCTCTAT-------TCTGTCTCATGCACTCAGGCACAACTTTTCCCaat---aaaaaaaaaaaaaaaa----aggaaaac
s panTro5.chr6              30102440 81 + 175400573 taaataaataaaCTGGTCTCTAT-------TCTGTCTCATGCACTCAGGCACAACTTTTCCCaat---aaaaaaaaaacaaaaa-----ggaaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30333114 80 + 173848474 taaataaataaaCTGGTCTCTAT-------TCTGTCTCATGCACTCAGGCACAACTTTTCCCaat----aaaaaaaaacaaaaa-----ggaaaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6153678 84 +   6154872 taaataaataaaCTTGTCTCAAT-------TCTGTTTCATGCACTCAGGCACAACTTTTCCCAATTaaaaaaaaaaaaaaaaaa-----ggaaaac
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74722254 75 + 122973662 -----GAGCAAACTGGTCTCTAT-------TCTGTCTCATGCACTCAGGCGCAACTTTTCCCGAT----Taaaaacaaaaacaa-----caacaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30484374 79 + 172585720 -----GAACAAACTGGTCTCTAT-------TCTCTCTTATGCACTCAGGCGCAACTTTTCCAGAT---TTaaaaaaaaaaaaaaag--aaagaaag
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       90438 65 +   1495729 -----CAGCAAACTGGTCTCTAT-------TCTGTCTCATGCACTCAGGCGCAACTTTTCCAGAT---Taaaaaaaaaaa----------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      145586 63 -    863181 -----CAGCAAACTGGTCTCTAT-------TCTGTCTCATGCACTCAGGCGCAACTTTTCCAGAT---TAAAAAAAAA------------------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29303485 66 -  71996105 -----CAGCAAACTGGTCTCTAT-------TCTGTCTCATGCACTCAGGCACAAATTTTCCAGAT---TTaaaaaaaaaaa---------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      139917 62 +    273075 -----CAGCAAACTGGTCTCTAT-------TCTGTCTCATGCACTCAGGCGCAACTTTTCCAGAT---T----AAAAAAAA---------------
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       41615 81 -   1829203 -----GAACAAACTGATCTCTAT-------TCTGTCTCATGCATTCAGGCACAACTTTTCCAGAT---TTaaaaaaaaaacaaaaaacaaacaaac
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1      187667 70 -    383796 -----AAGCAAAGTGGTCTCCAT-------GCTATCTCATGCACTCAGGCAAAATTTTTCCAGAT---TTGAAGAAAAAAAAAAA-----------
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17150745 75 -  18854210 -----AAGGAAATTGATCTCTATGAGAGTCTCTATCAGGTGTATTCAGACACAACTTCTCCAGGT---TTATAGAGAAAATCA-------------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e cebCap1.NW_016107755v1      478244 70 -   1771730 I
e macFas5.chr4             141029073  0 + 170955103 I

a score=1034193.000000
s hg38.chr6_GL000254v2_alt   1144063 172 +   4827813 aaaaaaCA-----------GTTTCTAC-ACCTCCATTCCCAGAGCAAGCTCACTC------TCTGTCACCAAACTCCGT--GGGTGACTTTTCTTCTAGAAGAGTCCAGGTGGACAG------------------GGAGTCCAGTTCAGGGACGGAGATTCCTGGATGAAAAGTGAAGGGAGAGGGACAGGGCCCATGCCGAGGGTTTCT
s panTro5.chr6              30102521 171 + 175400573 aaaaa-ca-----------GTTTCTAC-ACCTCCATTCCCAGAGCAAGCTCACTC------TCTGTCACCAAACTCCGT--GGGTGAGTTTTCTTCTAGAAGAGTCCAGGTGGACAG------------------GGAGTCCAGTTCAGGGACGGAGATTCCGGGATGAAAAGTGAAGGGAAAGGGACAGGGCCCATGCCGAGGGTTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30333194 171 + 173848474 aaaaa-CA-----------GTTTCTAC-ACCTCCATTCCCAGAGCAAGCTCACTC------TCTGTCACCAAACTCCGT--GGGTGAGTTTTCTTCTAGAAGAGTCCAGGTGGACAG------------------GGAGTCCAGTTCAGGGACGGAGATTCCGGGATGAAAAGTGAAGGGAAAGGGACAGGGCCCATGCCGAGGGTTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6153762 165 +   6154872 aaaaaaCA-----------GTTTCTACAACCTCCATTCCCAGAGCAAGCTCAC---------CTGTCACCAAACTCCGT--GGGTGAGTTTTCTTCTAGAAGAGTCCA-GTGGACA-------------------GGAGTCCAGTTCAGGGACGGAGATTCCGGGATGAAAAGTGAA-GGAGAGGGACA-GGCCCATGTC-AGGGTTTCT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74722329 190 + 122973662 aaaaa-----------------TCTAT-ACCTCCATTCCCAGA-CAAGCTCACTCTCACTGTCTGTCACCAAGCTCCGT-GGGGTGAGTTTTCTTCTAGAAGAGTCCAGGTGGACAGGTAAGGAGTGGGAGGCAAGGAGTCCAGTTCAGGGAGGGAGATTCCGGGATGAAAAGTGAAGGGAGAGGGACGGGGCTAATGCCGAGGGTTTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30484453 189 + 172585720 aaaaa--a-----------GTCTCTAT-ACCTTCTTTCCCAGAGCAAGCTCACTC------TCTGGCACCAAGCTCCGT-GGGGTGAGTTTTCTTCTAGAAGAGTCCAGGCGGACAGGTAAGGAGTGGGAGGCAGGGAGTCCAGTTCAGGGATGGAGATTCCAGGATGAAAAGTGAAGGGAGAGTGACGGGGCCCATGCCCAGGGGTTCT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       90503 189 +   1495729 aaaaa--a-----------GTCTCTAT-ACCTTCATTCCCAGAGCAAGCTCACTC------TCTGGCACCAAGCTCCGT-GGGGTGAGTTTTCTTCTAGAAGAGTCCAGGGGGACAGGTAAGGAGTGGGAGGCAGGGAGTCCAGTTCAGGGATGGAGATTCCGGGATGAAAAGTGAAGGGAGAGTGACGGGGCCCATGCCCAGGGGTTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      145649 189 -    863181 AAAAA--A-----------GTCTCTAT-ACCTTCATTCCCAGAGTAAGCTCAGTC------TCTGGCACCAAGCTCCGT-GGGGTGAGTTTTCTTCTAGAAGAGTCCAGGGGGACAGGTAACGAGTGGGAGGCACGGAGTCCAGTTCAGGGATGGAGATTCCGGGATGAAAAGTGAAGGGAGAGGGACCGGGCCCATGCCCAGGGGTTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29303551 189 -  71996105 aaaaa--a-----------GTCTCTAT-ACCTTCATTCCCAGAGCAAGTTCACTC------TCTGGCACCAAGCTTTGT-GGGGTGAGTTTTCTTCCAGAAGAGTCCAGGGGAACAGGTAAGGAGTGGGAGGCAGGGAGTCCAGTTCAGGGACGGAGGTTCCCGGATGAAAAGTGAAGGGAGAGGAACGCGGCCCATGCCCAGGGGTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      139979 189 +    273075 AAAAA--A-----------GTCTCTAT-ACCTTCATTCCCAGAGTAAGCTCAGTC------TCTGGCACCAAGCTCCGT-GGGGTGAGTTTTCTTCTAGAAGAGTCCAGGGGGACAGGTAACGAGTGGGAGGCACGGAGTCCAGTTCAGGGATGGAGATTCCGCGATGAAAAGTGAAGGGAGAGGGACCGGGCCCATGCCCAGGGGTTCT
i manLeu1.NW_012101121v1   C 0 T 65500
s colAng1.NW_012115577v1       41696 200 -   1829203 aaaaa--aacacaaaCACGGTCTCTAT-ACCTTTATTCCCAGAGCAAGCTCACTC------TCTGGCACCAAGCTCCGT-GGGGTGAGTTTTCTCCTAGAAGAGTCCAGGGGGACAGGTAAGGAGTGGGAGGCAGGGAGTCCAGTTCAGGGAGGGAGATTCCGGGATGAAAAGTGAAGGGAGAGTGACGGGGCCCATGCCCAGGGGTTCT
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1      478314 191 -   1771730 AAAGCCCT-----------GTCTCTAC-ACCTCCATTCCCAGAGCGAGCTCACTC------TCTGGTAACAAGCTTCCC-GGGGTGAGTTTTCTTCTAGAAGAGTCCAGGGGGACAGGTAAGGAGTGGGAGGCGGGGAGTCCAGTTCAGGTACCGGGATGCAGGGATGACAAGTGAAGGGAGAGGGACGGGGCCCATGCTGAGGGTTTCT
i cebCap1.NW_016107755v1   I 70 C 0
s aotNan1.NW_018496904v1      187737 189 -    383796 --AACCCT-----------GTCTCTAC-ACCTCCATTCCCAGGGCGAGCTCACTC------TCTGGCACTAAGCTTCCT-GGGGTGAGTTTTCTTCTAGAAGAGTCCAGGGGGACAGGTAAGGAGTgggaggcagggagttcagttcagggaccaggatgcagggatgaaaagtgaagggaAAGGGACGGGGCCCAGTCTGAGGCTTTCT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17150820 175 -  18854210 -----------------CCATCTGTAC-ACCTCCAGTCGCAGGGCGAATTCAC--------TCTGGCGTCAGGTACCCTAGGGGTGAGCTTTCTTCTAAAAGAGTCCAAGTCGG-AGGAAAGGAGCAGGAAGCT-GGCGTCTAGTTCAATGACAG-GATTCAGGGTGGAAAA--GAAAGGGTAGGGGCTGGACCCA-GCCTGGGGAT---
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e macFas5.chr4             141029073   0 + 170955103 I

a score=2066159.000000
s hg38.chr6_GL000254v2_alt   1144235 343 +   4827813 TCCTGGTTTCTCAGACAGCTCCTGGGCCAAGACTCAGGGAAACAC--TGAGACA-GAGCGCTTGGCACAG-GAGGAGCGGGGTCAGGGCGAAGTCCCAGGGCCCCAGGCGTGG-CTCT-CAGGG-TCTCAGGCCCCGAAGGCGGTGTATGGATTGGGGAGGCCCC-GCCTTGGGGATTCGCCACCTCCG-----CA--GTTTCT--CTTCTTCTCAC-AACCTGCGACGGGTCCTTTTTCCTGG---ATACTCAGG-AAGCGGGCACAGTTCTCATTCCCACTAGG-TGTCGGGTTTCTAGAGAAGCCAATCGGTGCCGCCGCGG-TCCCGGTTCTAAAGTCCCCACGCACCCACCGGGACTCAGAT
s panTro5.chr6              30102692 343 + 175400573 CCCTGGTTTCTCAGACAGCTCCTGGGCCAAGACTCAGGGAAACAC--TGAGACA-GAGCGCTTGGCACAG-GAGGAGCGGGGTCAGGGCGAAGTCCCAGGGCCCCAGGCGTGG-CTCT-CAGGG-TCTCAGGCCCCGAAGGCGGTGTATGGATTGGGGATGCCCC-GCCTTGGGGATTCGCCACCTCCG-----CA--GTTTCT--CTTATTCTCAC-CACCTGAGACGGGTCCTTCTTCCTCC---ATACTCACG-AAGCGGACACAGTTCTCATTCCCACTAGG-TGTCGGGTTTCTAGAGAAGCCAATCGGTGCCGCCGCGG-TCCCGGTTCTAAAGTCCCCACGCACCCACCGGGACTCAGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30333365 343 + 173848474 TCCTGGTTTCTCAGACAGCTCCTGGGCCAAGACTCAGGGAAACAC--TGAGACA-GAGCGCTTGGCACAG-GAGGAGCGGGGTCAGGGCGAAGTCCCAGGGCCCCAGGCGTGG-CTCT-CAGGG-TCTCAGGCCCCGAAGGCGGTGTATGGATTGGGGATGCCCC-GCCTTGGGGATTCGCCACCTCCG-----CA--GTTTCT--CTTATTCTCAC-CACCTGAGACGGGTCCTTCTTCCTCC---ATACTCACG-AAGCGGACACAGTTCTCATTCCCACTAGG-TGTCGGGTTTCTAGAGAAGCCAATCGGTGCCGCCGCGG-TCCCGGTTCTAAAGTCCCCACGCACCCACCGGGACTCAGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6153927 353 +   6154872 TCCTGG-TTCTCAGACAGC-CCTGGGCCAAGACTCAGGGAAACAC--TGAGACAGGAGCGCTTGGCACAGAGAGGAGCGGGGTCAGGGCGAAGTCCCAGGGCCCCA-GCGTGG-CTCTCCCAGG-TCTCAGGCCCCGAAGGC-GTGTATGGATTGGGGAGGCCCTGGCCTTGGGGATTCGCCACCGCCACTGTCCA--GTTTCT--CTTCTTCTCACACACCTGCGACAGGTCCTTCTTCCTACAGGATACTCACGAAAGCGGACACA-TTCTCATTCCTACTAGGTTGTCGGGTTTCTAGAGAAGCCAATCGGGTGCCCCGCGG-TCCCGGTTCTAAAGTCCCCACGCACCCACCGGGACTCAGAT
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74722519 342 + 122973662 TCCTGGTTTCTCAGACAGCTCCTGGGCCAAGACTCAGGGAAACAT--TGAGACA-GAGCGCTTGGCACAG-GAGGAGCGGGGTCAGGGCGAAGTCCCAGGGCCCCAGGCGTGG--TCT-CAGGG-TCTCAGGCCCCGAAGGCGGTGTATGGATTGGGGAGGCCCA-GCGTTGGGGATTCCCCATCTCCG-----CA--GTTTCT--CTTCTTTTCAC-AACCTGCACCTGGTCCATCTTCCTGG---ATACTCACG-ACGCGGACCCAGTTCTCACTCCCATTGGG-TGTCAGGTTTCTAGAGAACCCAATCACTGTCGTCACGG-TCCTGGTTCTAAAGTCCCCACGCACCCACCGGTACTCAGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30484642 342 + 172585720 CCCTGGTTTCTCAGACAGCTCGTGGGCCAAGACTCAGGGAGACAT--TGAGACA-GAGCGCTTGGCACAG-GAGGAGCGGGGTCAGGGCGAAGTCCCAGGGCCCCAGGTGTGG-CTTT-CAGGG-TCTCAGGCCCCAAAGGCGGTGTATGGATTGGGGAGGCCCA-GCGTTGGGGATTCCCCATCTCCG-----CA--GTTTCT--CTTCTTCTCAC-AACCTGCGTCGAGTCCTTCTTCCTGG---ATACTCACG-ACGCGACCCTCGTTCTCACTCCCATTGGG-TGTC-GGTTTCTAGAGACGCCAATCAGCGTCGCCGCAG-TCCCGGTTCTAAAGTCCCCACTCACCCACGAGGACTCAGAT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       90692 343 +   1495729 CCCTGGTTTCTCAGACAGCTCCTGGGCCAAGACTCAGAGAGACAT--TGAGACA-GAGCGCTTGGCACAG-GAGGAGCGGGGTCAGGGCGAAGTCCCAGGGCCCCAGGTGTGG-TTTT-CAGGG-TCTCAGGCCCCGAAGGCGGTGTATGGATTGGGGAGTCCCA-GCGTTGGGGATTCCCCATCTCCG-----CA--GTTTCT--CTTCTTCTGAC-AACCTGCGTCGTGTCCTTCTTCCGGA---ATACTCAGG-ACGCGGACCCCGTTCTCACTCCCATTGGG-TGTCGGGTTTCTAGAGACGCCAATCAGCGTCGCCGCAG-TCCCGGTTCTAAAGTCCCCACTCTCCCACCAGGACTCAGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      145838 340 -    863181 CCCTGGTTTCTCAGACAGCTCCTGGGCCAAGACTCAGGGAGACAT--TGAGACA-GAGCGCTTGGCACAG-GAGGAGCGGGGTCAGGGCGAAGTCCCAGGGCCCCAGGTGTGG-CTCT-CAGGG-TCTCAGGCACCGAAGGCGGTGTATGGATTGGGGAGTCCCA-GCGTTGGGGATTCCCCATCCCCG-----CA--TTTTC-----TCTTCTCAC-AACCTGCGTTGTGTCCTTCTTCCGGA---ATACTCACG-ACGCGAACCCCGTTCTCACTCCCATTGGG-TGTCGGGTTTCTAGAGACGCCAATCAGCGTCGCCGCGG-TCCCGGTTCTAAAGTCCCCACTCACCCACCAGGACTCAGAT
i cerAty1.NW_012002535v1   C 0 M 3630
s chlSab2.chr17             29303740 343 -  71996105 CCCTGGTTTCTCAGACAGCTCCTGGGCCAAGACTCAGGGAGACAT--TGAGACA-GAGCGCTTGGCACAG-GAGGAGTGGGGTCAGGGCGAAGTCCCAGGGCCCCAGGTGTGG-CTCT-CAGGG-TCTCAGGCCCCGAAGGCGGTGTATGGATTGGCGAGTCCCA-GCATTGGGGATTCCCCATCTCCG-----CA--GTTTCT--CTTCTTCTCAC-AACCTGCGTCGTGTCCTTCTTCCTGG---ATACTCACG-ACGCGGACCCCGTTCTCACTCCCATTGGG-TGTCGGGTTTCTGGAGCCGCCAATCAGCGTCGCCGCAG-TCCAGGTTCTAAAGTCCCCACTCACCCACCAGGACTCAGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1       74668 342 +    273075 CCCTGGTTTCTCAGA---CTCCTGGGCCAAGACTCAGGGAGACAT--TGGGACA-GAACGCTTGGCACAG-GAGGATCGAGGTCAGGGTGAAGTCCCAGGGCCCCAGGCGTGG-CTCT-CAGGA-TCTCAGGCCCCACAAGCGGTGTATGGACTGGGGAGGTACA-GGGTTAGGGATTCTCCAGCTCCA-----CAGCGTTTCT--CTTCCTCTCCC-AACCTGCGTCAGATCCTTCTTCCTGG---ATACTCATG-AGGCAGACTCAGTTCTCACTCCCATTGGG-TGTCGAGTTTCTAGAGAAGCCAATCATTGTCGATGCGG-CCCCTTTTCTAAAGTCCCCAGTCACCTCCCTGGACTCAGAT
i manLeu1.NW_012101121v1   T 65500 C 0
s colAng1.NW_012115577v1       41896 341 -   1829203 ACCTGGTTTCTTAGACAGCTCCTGGGCCAAGACTCAGGGAGACAT--TGAGACA-G--CGGTTGGCACAG-GAGGAGCGGGGTCAGGGCGAAGTCTCAGGGCCCCAGGTGTGG-CTCT-CAGGG-CCTCAGGTCCCGAAGGCGGTGTATGGATTGGGGAGTCCCA-GCGCTGGGGATTCCCCATCTCCG-----CA--GTTTCT--CTTCTTCTCAC-AACCTGCGTCGTGTCCTTCTTCCTGG---ATACTCAGG-ACGCGAACCCCGTTCTCACTCCCATTGGG-TGTCGGGTTTCTAGAGACGCCAATCAGTGTCGCCGCAG-TCCCTGTTCTAAAGTCTCCACTCACCCACCAGGACTCAGAT
i colAng1.NW_012115577v1   C 0 I 1
s cebCap1.NW_016107755v1      478505 334 -   1771730 CTCTGGTTTCTCAG-CAGCTCCTGGGCCAAGACTCAGGGAGACAT--TGAGACA-GAGCGCTTGGCACAG-GTGGAGCAGGGTCAGGGCGAAGTCCCAGGGCCCCAGGGGTGG-CTCT-CAGGG-TCTCAGTCCCCGAAGGC--------GATTGGCGAGGCGCA-GCGATGGGGATTCCCCATCTCCG-----CA--GCTTCT--CTTCCTCTCCC-AACCTGTGTCGGGTCCTTCTTCCTGG---ATACTCATG-ACGCATCCCCAGTTCCCACTCTCATTGGG-TGCCGGGTTTCTAGAGAAGCCAATCAGCGTCGCCGCGG-TCCCGGTTCTAAAGTCCCCAGTCACCCACCCGGACTCAGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      187926 341 -    383796 CTCTGGTTTCTCAG-CAGCTCCTGGGCCAAGACTCAGGGAGACAT--TGAGACA-GAGAGATTGGCACAG-GAGGAGCGGGGTCAGGGCGAAGTCCCAGGTCCCCAGGCGTGG-CTTG-CAGGA-TCTCAGACGCGGAAGGCTCTATATGGAATGGGGAGGCGCA-GCGTTGAGGA-TCCCCATCTCCG-----CA--GTTTCT--CTTCCTCTCTT-CACCTGTGTCGGGTCCTTCTTCCTGG---ATACTCACG-ACGCGAACCCAGTTCTCACTCCCATTGGG-TGTCGGGTTTCTAGAGAATCCAATCAGCGTCGCTAAGG-TCCTGGTTCTAAAGTCCCCAGTCACCCACCCGTACTCAGAT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17150995 329 -  18854210 -----------CAGACAGCTCCTGGGTCAGGACTGAG-GAGACAGTATGAGGAA-CAGAGCTTGGTGCAG-GAGAA---GGGTTAGGGGAAAGTTCCA-GCTTCTGGGCGTGGAATCT-CAGGGATCTCAGTCCCC-CGGGCGGTGTCGAGGGTACGGAG-CTCA-GCGCTAGGGATTCGCGGTCTCGC-----TA--ACTATTAGCTTTTCCTCCC-AATCGCTGTCAGGTCTTTCTTCCTGG---ATACT-GTG-ACGTACCAACAGTTCTCATTTCCATTGGG-TCT-GGGTTTCTGGAAAA-CCAATCAGCGTCGCCACAGTTCCCGATTATTAAATCTCTGCAGAGCTATCCTGACTCAACG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e macFas5.chr4             141029073   0 + 170955103 I

a score=110272.000000
s hg38.chr6_GL000254v2_alt   1144578 19 +   4827813 TCTCCCCAGACGCCGAGGA
s panTro5.chr6              30103035 19 + 175400573 TCTCCCCAGACGCCGAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30333708 19 + 173848474 TCTCCCCAGACGCCGAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6154280 19 +   6154872 TCTCCCCAGACGCCGAGGA
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74722861 19 + 122973662 TCTCCCCAGACGCCGAGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30484984 19 + 172585720 TCTCCGCAGACGCCAAGGA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       91035 19 +   1495729 TCTCCGCAGACGCCGAGGA
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29304083 19 -  71996105 TCTCCGCAGACGCCGAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1       75010 19 +    273075 TCTCCCCAGATGCCAAGGA
i manLeu1.NW_012101121v1   C 0 I 6
s colAng1.NW_012115577v1       42238 19 -   1829203 CTCCCCCAGACGCCGAGGA
i colAng1.NW_012115577v1   I 1 C 0
s cebCap1.NW_016107755v1      478839 19 -   1771730 TCTCCCCAGACTCTGCGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      188267 19 -    383796 TCTACACAGACGCCGAGGA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17151324 19 -  18854210 TCTCCTCAGACTCAGAGGA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=14503.000000
s hg38.chr6_GL000254v2_alt   1144597 5 +   4827813 TGGTG-
s panTro5.chr6              30103054 5 + 175400573 TGGTG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30333727 5 + 173848474 TGGTG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6154299 5 +   6154872 TGGTG-
i gorGor5.CYUI01015250v1   C 0 C 0
s nomLeu3.chr1a             74722880 5 + 122973662 TTGCG-
i nomLeu3.chr1a            C 0 N 0
s rheMac8.chr4              30485003 5 + 172585720 TGGCG-
i rheMac8.chr4             C 0 I 1
s macNem1.NW_012012100v1       91054 5 +   1495729 TGGCG-
i macNem1.NW_012012100v1   C 0 I 1
s chlSab2.chr17             29304102 5 -  71996105 TGGCG-
i chlSab2.chr17            C 0 I 1
s colAng1.NW_012115577v1       42257 5 -   1829203 TGGCG-
i colAng1.NW_012115577v1   C 0 I 1
s cebCap1.NW_016107755v1      478858 5 -   1771730 TGAAG-
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496904v1      188286 5 -    383796 TGGCG-
i aotNan1.NW_018496904v1   C 0 I 1
s otoGar3.GL873550          17151343 5 -  18854210 -TGCGG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e manLeu1.NW_012101121v1       75029 6 +    273075 I
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073 0 + 170955103 I

a score=-1240.000000
s hg38.chr6_GL000254v2_alt   1144602 1 +   4827813 -C
s panTro5.chr6              30103059 1 + 175400573 -C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30333732 1 + 173848474 -C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6154304 1 +   6154872 -C
i gorGor5.CYUI01015250v1   C 0 C 0
s otoGar3.GL873550          17151348 1 -  18854210 G-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e aotNan1.NW_018496904v1      188291 1 -    383796 I
e cebCap1.NW_016107755v1      478863 1 -   1771730 I
e colAng1.NW_012115577v1       42262 1 -   1829203 I
e manLeu1.NW_012101121v1       75029 6 +    273075 I
e chlSab2.chr17             29304107 1 -  71996105 I
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macNem1.NW_012012100v1       91059 1 +   1495729 I
e macFas5.chr4             141029073 0 + 170955103 I
e rheMac8.chr4              30485008 1 + 172585720 I

a score=1468744.000000
s hg38.chr6_GL000254v2_alt   1144603 292 +   4827813 TCATGGCG-CCCCGAACCCTCCTCCTGCTGCTCTCAGGGGCCCTGGCCCTGACCCAGACCTGGGCGCGTGAGTGCAGGGTCTGCAGGGAAATGGTC------GGGAGGA-----GCGAGGGGCCCGCCCGGCGGGGGCGCAGGA-CCCAGGGAGCCGCGCAGGGAGGAGGGTCG-GGCGGGTCTCAGCTCCTCCTCGCTCCCAGGCTCCCACTCCATGAGGTATTTCTACACCACCATGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCTCCGTCGGCTACGTGGACGATACGCAGTTCGTGC
s panTro5.chr6              30103060 292 + 175400573 TCATGGCG-CCCCGAACCCTCCTCCTGCTGCTCTCAGGGACCCTGGCCCTGACCCAGACTTGGGCGCGTGAGTGCAGGGTCTGCAGGGAAATGGTC------GGGAGGA-----GCGAGGGGCCCGCCCAGCGGGGGCGCAGGA-CCCGGGGAGCCGCGCAGGGAGGAGGGTCG-GGCGGGTCTCAGCTCCTCCTCGCTCCCAGGCTCCCACTCCATGAGGTATTTCTACACCACCATGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCTCCGTCGGCTACGTGGACGATACGCAGTTCGTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30333733 292 + 173848474 TCATGGCG-CCCCGAACCCTCCTCCTGCTGCTCTCAGGGACCCTGGCCCTGACCCAGACTTGGGCGCGTGAGTGCAGGGTCTGCAGGGAAATGGTC------GGGAGGA-----GCGAGGGGCCCGCCCAGCGGGGGCGCAGGA-CCCGGGGAGCCGCGCAGGGAGGAGGGTCG-GGCGGGTCTCAGCTCCTCCTCGCTCCCAGGCTCCCACTCCATGAGGTATTTCTACACCACCATGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCTCCGTCGGCTACGTGGACGATACGCAGTTCGTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6154305 291 +   6154872 TCATGGAGCCCCCGAACCCTCCTCCTGCTGCTCTCAGGGGCCCTGGCCCTGACCCAGACTTGGGCGCGTGAGTGCAGGGTCTGCA-GGAAAGGGTC------GGGAGGA-----GCGAGGGGCCCGCCCGGCCGGGGGGCAGGACCCCGGGGAGCCGCGCAGGGAGGAGGGTCG-GGCGGTCTTCAGCTCCTCCTCGCTCCCAATCTCCCACTCCATGAGGTATTTC-ACACCACCATGTCCCGGCCCGGCCGCCGGGAG-CCCGCTTCATCTCCGTCGGCTACGTGGACGATACGCAGTTCGTGC
i gorGor5.CYUI01015250v1   C 0 I 28
s nomLeu3.chr1a             74830734 298 + 122973662 TCATGTCG-CCCCGAACCCTCCTCCTGCTGCTCTCGGGGACCCTGGCCCTGGCCGAGACCTGGGCAGGTGAGTGCGGGGTCAAGAGGGAAACGGCCTCTGCTGGGAGGA-----GCGAAAGGCCCGCCCGGCCAGGGCGCAGGA-CCCGCGGAGCCGCGCGGGGAGGAGGGTCG-GGCGGGTCTCAGCCTCTCCTCGCCCCCAGGCTCCCACTCCTTGAGGTATTTCAGCACCGCCGTTTCCCGGCCGGGCCGCGGGGAGCCCCGCTTCATCGCCGTGGGCTACCTGGAGGACACGCAGTTCGTGC
i nomLeu3.chr1a            N 0 C 0
s rheMac8.chr4              30485009 298 + 172585720 TCATGGCG-CCCCGAACCCTCCTCCTGGTGCTCTCAGGGGCCCTGGCTCTGACCCAGACCCGGGCGGGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCTGCGGGGGGGA-----GCGAGGAGCCCGCCCGGCGGCGGCGCAGGA-CCCGGGGAACCGCGCGGGGAGGAGGGTCG-GGCGGGTCTCAGCCTCTCCTCGCCCCCAGGCTCGCACTCCATGAGGTATTTCTACACCTCCATGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGC
i rheMac8.chr4             I 1 C 0
s macNem1.NW_012012100v1       91060 297 +   1495729 TCATGGCG-CCCCGAACCCTCCTCCTGGTGCTCTCCGGGGCCCTGGCCCTGACCCAGACCTGGGCGGGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCTGCGGGGAGCA-----GCGACGGGACCG-CAGGCGGGGGCGCAGGA-CCCGGGGAGCCGCGCGGGGAGGAGGGTCG-GGCGGGTCTCAGCCTCTCCTCGCCCCCAGGCTCGCACTCCTTGAGATATTTCTACACCTCCATGTCCCGGCCCGGCCGCGGGCAGCCCCGCTTCATCTCCGTGGGCTACGTGGACGACACGCAGTTCGTGC
i macNem1.NW_012012100v1   I 1 C 0
s chlSab2.chr17             29304108 298 -  71996105 TCATGGCG-CCCCGAACCCTCCTCCTGGTGCTCTCAGGGGTCCTGGCCCTGACCCAGACCCGGGCGGGTGAGTGCGGGGTCGCGAGGGAAACGGCCTCCGCGGGGAGGA-----GCGAGGAGCCCGCCCGGCGGGGGCGCAGGA-CCCGGGGAGCCGCGCGGGGAGGAGGGTCG-GGCGGGTCTCAGCCTCTCCTCGCCCCCAGGCTCTCACTCCATGAGGTATTTCTACACCTACATGTCCCGGCCCGGCCGCGGAGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGC
i chlSab2.chr17            I 1 C 0
s colAng1.NW_012115577v1       42263 298 -   1829203 TCATGGCG-CCCCGAACCGTCCTCCTGGTGCTCTCAGGGGCCCTGGCCCTGACCCAGACCTGGGCAGGTGAGTGTGGGGTCGGGAGGGAAACGGCCTCTGCGGGGAGCA-----GCGAGGGGCCCGCCTGGCTGGGGCGCAGGA-CGCGCGGAGCCGCGCGGGGAGGAGGGTCG-GGCGGGTCTCAGCCTCTCCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCTACACCTCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCTTCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGC
i colAng1.NW_012115577v1   I 1 C 0
s cebCap1.NW_016107755v1      478864 297 -   1771730 TCGTGGCG-CCCCAAACCCTCCTCCTGCTGCTCTCGGGGTCCCTATTCCTGACAGAGACCTGGGCGGGTGAGTGCGGGGTCGGGAGGGAAACCGCCTGTGCGGGGAGGA-----GCGAGGGGCCCGCCAGGCGGGGAGGCAGGA-CCCGGGGAGCCGCGCCAGGAGGAGGGTCC-GGCTGGTCTCA-CCCCTCCTCACCCCCAGGCTCCCACTCCATGAGGTATTTCTACACCTCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGGTACATCTCTGTGGGCTACGTGGACGACACGCAGTTCGTGC
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496904v1      188292 298 -    383796 TCATGGCT-CCGCGAACCCTCCTCCTGCTGCTCTCGGGGGCCCTGGCCCTGACCGAGACCTGGGCGGGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCTGAGGGGAGGA-----GAGAGGGCCCCGCCGTGCGGGGGCGCAGGA-CCCGGGGAGCCGCGCCGGGAGGAGGGTCG-GGCGGGTCTCAGCCCCTCCTCGCCCCTAGGCTCCCACTCCATGAGGTATTTGAGCACCGCTGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCACCGTGGGCTACGTGGACGACACGCAGTTCGTGC
i aotNan1.NW_018496904v1   I 1 C 0
s otoGar3.GL873550          17151349 303 -  18854210 TCACGGCG-TCCGGACCCCTCCTCCTGCTGCTGTCGGTGGCCCTAGTCTTGACCCAGACCTGGGCAGGTGTGTGCGGGGTCGGGAGGGAAACGGCCTCAGCCGGGAGGGGGTGTGTGAGATGATCCTCCGGCGGGAACGCAGGA--CCGGGGAGCCACACCAGGAGGAGGGGCGCGCCGAGTCTCAGCCTCTACCCGCCCCCAGGCTCCCACTCCCTGCGGTATTTCTCCACCGCCGTGTCCCGAcccggccgcggggcgccccggTACATCGCTGTCGGCTACGTGGACGACACGCAGTTCGTGC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e manLeu1.NW_012101121v1       75029   6 +    273075 I
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=117233.000000
s hg38.chr6_GL000254v2_alt   1144895 28 +   4827813 GGTTCGACAGCGACGCCGCGAGCCAGAG
s panTro5.chr6              30103352 28 + 175400573 GGTTTGACAGCGACGACGCGAGTCCGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30334025 28 + 173848474 GGTTTGACAGCGACGACGCGAGTCCGAG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74831032 28 + 122973662 GGTTCGACAGTGACGCCGCGAGTCCGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30485307 28 + 172585720 GGTTCGACAGCGACGCCGCGAGCCAGAG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       91357 28 +   1495729 GGTTCGACAGCGACGCCGAGAGTCCGAG
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29304406 28 -  71996105 GGTTCGACAGCGACGCCGCGAGCCAGAG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1       42561 28 -   1829203 GGTTCGACAGCGACGCCGCGAGCCAGAG
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1      479161 28 -   1771730 GGTTCGACAGTGACGGCGCGATTCCGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      188590 28 -    383796 GGTTCGACAGCGACGCCGCGATTCCGAG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17151652 28 -  18854210 GGTTCGACAGCGACACGGAGAATCTGAG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e manLeu1.NW_012101121v1       75029  6 +    273075 I
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073  0 + 170955103 I
e gorGor5.CYUI01015250v1     6154596 28 +   6154872 I

a score=77426.000000
s hg38.chr6_GL000254v2_alt   1144923 15 +   4827813 GATGGAGCCGCGGGC
s panTro5.chr6              30103380 15 + 175400573 AGAGGAGCCGCGGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30334053 15 + 173848474 AGAGGAGCCGCGGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6154624 15 +   6154872 GAGGGAGCCGCGAGC
i gorGor5.CYUI01015250v1   I 28 C 0
s nomLeu3.chr1a             74831060 15 + 122973662 GATGAAGACGCGGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30485335 15 + 172585720 GATGGAGCCGCGGGC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       91385 15 +   1495729 GGTGGAGCCGCGGGC
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29304434 15 -  71996105 GATGGAGCCGCGGGC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1       42589 15 -   1829203 GATGGAGCCGCGGGC
i colAng1.NW_012115577v1   C 0 M 438
s cebCap1.NW_016107755v1      479189 15 -   1771730 AGAGGAGCCGCGGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      188618 15 -    383796 GATGGAGCCGCGGGC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17151680 15 -  18854210 GATGGAGCCGCGGGC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e manLeu1.NW_012101121v1       75029  6 +    273075 I
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=690036.000000
s hg38.chr6_GL000254v2_alt   1144938 208 +   4827813 G-CCGTGGATGGAGCGGGAGGGGCCGGAGTATTGGGACCGGAACACACAGATCTGC-AAGGCCCAGGCACAG---ACTGAACGAGAGAACCTGCGGATCGCGCTCCGCTACTACAACC-AGAGCGAGGGCGGTGAGTGACCCCG-GCCCGGGACGCAGGTCACGACC---CCTCCCCATCCCCCACGGAGGGCC----GGGTCGCCTCGAGTCTCTGGGTCC
s panTro5.chr6              30103395 208 + 175400573 G-CCGTGGATGGAGCGGGAGGGGCCGGAGTATTGGGACCGGAACACACAGATCTGC-AAGGCCCAGGCACAG---ACTGAACGAGAGAACCTGCGGATGGCGCTCCGCTACTACAACC-AGAGCGAGGGCTGTGAGTGACCCCG-GCCCGGGGCGCAGGTCACGACC---CCTCCCCATCCCCCACGGAGGGCC----GGGTCGCCTCGAGTCTCTGGGTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30334068 208 + 173848474 G-CCGTGGATGGAGCGGGAGGGGCCGGAGTATTGGGACCGGAACACACAGATCTGC-AAGGCCCAGGCACAG---ACTGAACGAGAGAACCTGCGGATGGCGCTCCGCTACTACAACC-AGAGCGAGGGCTGTGAGTGACCCCG-GCCCGGGGCGCAGGTCACGACC---CCTCCCCATCCCCCACGGAGGGCC----GGGTCGCCTCGAGTCTCTGGGTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015250v1     6154639 219 +   6154872 GCCCGTGGATGGGAGCGGGAGGGCCGGA-TATTGGACCGGGAACACACAGATCTGCAAAAGCCCAAGCACAGGAAACTGAACGAGAGAACCTGCGGATCGCGCTCCGATACTACAACCGAGAGCAGGAGCGGTGAGTGACCCGG-GCCCGGG-CGCAGTTCACGACCCCACCTCCACATCCCCCTCGGAGGGCCCCGGGGGTCGCCTCGAGTCTCTGGGTCC
i gorGor5.CYUI01015250v1   C 0 N 0
s nomLeu3.chr1a             74831075 211 + 122973662 G-CGGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCTACAGACACTGGGCGCC-AAGGCCCAGGCACAG---ACTGACCGAGTGAACCTGCGGACCCTGCTCCGCTACTACAACC-AGAGCGAGGCCGGTGAGTGACCCCT-GCCCGGGGTGCAGATCATTTACTCCCCGCTCCATGCCTCACGGACGGCC----CTGGTCCCCTGAGTCTTCGGGTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30485350 209 + 172585720 G-CCGTGGGTGGAGCAGGAGGGTCCAGAGTATTGGGACCGGGAGACACAGAACATG-AAGACCGCGACACAG---AATGCCCCAGTGGCCCTGCGGAACCTGCGCGGCTACTACAACC-AGAGCGAGGTCGGTGAGTGACCGCG-GCCCGGGGCGCAGGTCACGACC---CCTCCGCATCCCCCACGGACGGCCC---GCGTCGCCCCGAGTCTCCGGGTCC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       91400 209 +   1495729 G-CCGTGGATGGAGCAGGAGGGGCCGGAGTATTGGGACCAGAACACACGGATCTGC-AAGGCCGACACACAG---ACTCTCCGAGAGAACCTGCGGACCCTGCTCCGCTACTACAACC-AGAGCGAGGCCGGTGAGTGACCCCG-GCCCGGGGCGCAGGTCACGACC---CCTCCACATTCCCCACGGACGGCCC---GCGTCGCCCCGAGTCTCCGGGTCC
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29304449 209 -  71996105 G-CCGTGGGTGGAGCAGGAGGGTCCAGAGTATTGGGACCGGAGCACACGGATCATG-AAGACCGAGACACAG---ATGGCCCCAGTGGGCCTGCGGAACCTGCGCGGCTACTACAACC-AGAGCGAGGCGGGTGAGTGACCCCG-GCCCGGGGCGCAGGTCACGACC---CCTTCCCGTCCCCCACGGACGGTCC---GCGTCGCCCCCAGTCTCCGGGTCC
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1      479204 209 -   1771730 G-CCGTGGATGGAGAAGGTGGGGCCGGAGTATTGGGACCACAACACACGGCTCTCC-AAGGCCCAGGCACAG---GCTGACCGAGTGAGACTGCGGACCCTGCTCGGCTACTACAACC-AGAGCGAGGCCGGTGAGTAGCCCCT-GCCCGGGGCGCAGGTCACGGCC---CCTCCCTGTTCCCCACGCACGGCCC---GGGTCACCCTGAGTCTCCGGGTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      188633 209 -    383796 G-CCGTGGGCAGAGCAGGAGGGGCCGGAGTATTGGGACCGGGACACACGGATCTGC-AAGGCCAACGCACAG---ACTTACCGAGTGAACCTGCGGAACCTGCGCGGCTACTACAACC-AGAGCGAGGCCGGTGCGTGACCCTG-GCCCGGGGCGCAGGTCACGACC---CCTCCCCATTCCCCACGGATGGCCA---AGGTCGCCTCGAGTCTCCAGGTTC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17151695 200 -  18854210 G-CCGTGGGCGGAGCGGGAGGGGCCGGTGTATTGGGAGGAGGAGACGCAGCGCATC-AAGGACCTTGCACAG---ATTGAGCGAGTGTGCCCGGACATCCTGCGCGGCTACTACAACC-AGAGCGAGGGCGGTGAGAGACCCCGAGGCCGGGTCACAGGTCACGACC---CCCACATA-CACCCACATACCAGCC---GCGTCG---------TCTGGGTCC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e colAng1.NW_012115577v1       42604 438 -   1829203 M
e manLeu1.NW_012101121v1       75029   6 +    273075 I
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=78624.000000
s hg38.chr6_GL000254v2_alt   1145146 27 +   4827813 GAGATCCTCCCCGAAACCGCGGGACC--C
s panTro5.chr6              30103603 27 + 175400573 GAGATCCACCCCGAAACCGCGGGACC--C
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30334276 27 + 173848474 GAGATCCACCCCGAAACCGCGGGACC--C
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74831286 29 + 122973662 AAGATCGACCCCGAGGCTGCGGGACCTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30485559 27 + 172585720 CAGATCCAACCCGAAGCCGCGGGACC--C
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       91609 27 +   1495729 CAGATACACCCCGAAGCCGCGGGACC--C
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29304658 27 -  71996105 CAGATCCGCCCCGAGGCCGCGGGACC--C
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1      479413 27 -   1771730 AAGATTCACGCCGAAGTTGCGGGACC--C
i cebCap1.NW_016107755v1   C 0 I 43
s aotNan1.NW_018496904v1      188842 27 -    383796 GAAATCCACCCCGAGGCTGCAGGACC--C
i aotNan1.NW_018496904v1   C 0 I 2
s otoGar3.GL873550          17151895 27 -  18854210 TGGAGTCACCCCAAGGCTGCGGGACC--C
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e colAng1.NW_012115577v1       42604 438 -   1829203 M
e manLeu1.NW_012101121v1       75029  6 +    273075 I
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=85275.000000
s hg38.chr6_GL000254v2_alt   1145173 37 +   4827813 --CGAGACCCTTGACCTGGGAGAGGCC--CAGGCGCCTTTA
s panTro5.chr6              30103630 37 + 175400573 --CGAGACCCTTGACCTGGGAGAGGCC--CAGGCGCCTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30334303 37 + 173848474 --CGAGACCCTTGACCTGGGAGAGGCC--CAGGCGCCTTTA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74831315 37 + 122973662 --AGAGATCCTCGACCCGGGAGAGCCC--CAGGCGTCTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30485586 37 + 172585720 --GGGGACCCTTGACCCGGGAGAGCCC--CAGGCGCCTTTA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       91636 37 +   1495729 --CGAGACCCTTGACCCGGGAGAGCCC--CAGGCCTCTTTG
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29304685 36 -  71996105 --CGAGACCCTTGACCC-GGAGAGCCC--CAGGCGCCTTTA
i chlSab2.chr17            C 0 C 0
s aotNan1.NW_018496904v1      188871 37 -    383796 --CCAGACCCTCGATCCGGGAGAAACT--CGGGCACCTTTA
i aotNan1.NW_018496904v1   I 2 C 0
s otoGar3.GL873550          17151922 41 -  18854210 CCTGAGACCTTCGAGCTGGGAAGGACCCGCGGGCACTTTCA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e cebCap1.NW_016107755v1      479440 43 -   1771730 I
e colAng1.NW_012115577v1       42604 438 -   1829203 M
e manLeu1.NW_012101121v1       75029  6 +    273075 I
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=142443.000000
s hg38.chr6_GL000254v2_alt   1145210 44 +   4827813 CCCGGTTTCATTTTCAGTTTAGGCCAAAATCCCCGCGGGTTGGT
s panTro5.chr6              30103667 44 + 175400573 CCCGGTTTCATTTTCAGTTTAGGCCAAAATCCCCGCGGGTTGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30334340 44 + 173848474 CCCGGTTTCATTTTCAGTTTAGGCCAAAATCCCCGCGGGTTGGT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74831352 44 + 122973662 CCCGGTTTCATCTTCAGTTGAGGCCAAAATCTCCGCAGGTTGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30485623 44 + 172585720 CCCGGTTTCATTTTCAGTTGAGGCCAAAATGCCCGCGGGTTggt
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       91673 44 +   1495729 CCCGGTTTCATTTTCAGTTGAGGCCAAAATCCCCGCCGGTTGGT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29304721 44 -  71996105 CCCGGTTTCGTTTTCAGTTGAGGCCAAAATCCCCGGAGGTTGGT
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1      479483 43 -   1771730 -CCCGGTTCATTTTCAGTTTAAACCAAAATCCCCgcgggttggg
i cebCap1.NW_016107755v1   I 43 C 0
s aotNan1.NW_018496904v1      188908 44 -    383796 CCCGGGTTCATATTCAGTTTAGGCAAAAATCCCCGCGGGTTGGT
i aotNan1.NW_018496904v1   C 0 I 37
s otoGar3.GL873550          17151963 39 -  18854210 CCCAG-----TTTTCAGTTTGGGACAAAATCCCCGCGGGGTGGT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e colAng1.NW_012115577v1       42604 438 -   1829203 M
e manLeu1.NW_012101121v1       75029  6 +    273075 I
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=44172.000000
s hg38.chr6_GL000254v2_alt   1145254 22 +   4827813 Cggggcaggg-cggggctcgggg
s panTro5.chr6              30103711 22 + 175400573 Aggggcaggg-cggggctcgggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30334384 22 + 173848474 AGGGGCAGGG-CGGGGCTCGGGG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74831396 23 + 122973662 AAGGGCCGGGCCGGGGCTCGGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30485667 22 + 172585720 cggggcgggg-cggggctcggtg
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       91717 22 +   1495729 CGGGGCGGGG-CGGGGCTCCGGG
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29304765 22 -  71996105 CGGGGCGGGG-CGGGGCTCGGGG
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1      479526 18 -   1771730 cgg----ggg-cggggctcggtg
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550          17152002 17 -  18854210 CGGGGCTGGG-CGCGGCT-----
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e aotNan1.NW_018496904v1      188952 37 -    383796 I
e colAng1.NW_012115577v1       42604 438 -   1829203 M
e manLeu1.NW_012101121v1       75029  6 +    273075 I
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=8090.000000
s hg38.chr6_GL000254v2_alt   1145276 3 +   4827813 gac
s panTro5.chr6              30103733 3 + 175400573 gac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30334406 3 + 173848474 GAC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74831419 3 + 122973662 GGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30485689 3 + 172585720 ggc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       91739 3 +   1495729 GAC
i macNem1.NW_012012100v1   C 0 I 190
s chlSab2.chr17             29304787 3 -  71996105 GAC
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1      479544 3 -   1771730 ggc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      188989 3 -    383796 GGC
i aotNan1.NW_018496904v1   I 37 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e otoGar3.GL873550          17152019 0 -  18854210 C
e colAng1.NW_012115577v1       42604 438 -   1829203 M
e manLeu1.NW_012101121v1       75029 6 +    273075 I
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073 0 + 170955103 I

a score=68707.000000
s hg38.chr6_GL000254v2_alt   1145279 28 +   4827813 cgggctgaccgcgggggcggggCCAGGT
s panTro5.chr6              30103736 28 + 175400573 cgggctgaccgcgggggcggggCCAGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30334409 28 + 173848474 CCGGCTGACCGCGGGGGCGGGGCCAGGT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74831422 28 + 122973662 GGGGCTGACCGCGGGAACTGGGCCAGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30485692 28 + 172585720 ggggctgaccgcgggggcggggcCAGGG
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29304790 28 -  71996105 TGCACTGACCGCGGGGGCGGGGCCAGGA
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1      479547 27 -   1771730 ggggctga-cgcgggggcggggccaggg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      188992 27 -    383796 GGGGCTGA-CGCGGGGGCGGGGCCAGGG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17152019 22 -  18854210 ------GACTGCGGGGGCGGGGCCAGGG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e colAng1.NW_012115577v1       42604 438 -   1829203 M
e manLeu1.NW_012101121v1       75029  6 +    273075 I
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macNem1.NW_012012100v1       91742 190 +   1495729 I
e macFas5.chr4             141029073  0 + 170955103 I

a score=142372.000000
s hg38.chr6_GL000254v2_alt   1145307 46 +   4827813 TCTCACACCATGCAGGTGATGTATGGCTGCGACGTGGGGCCCGACG
s panTro5.chr6              30103764 46 + 175400573 TCTCACACCATGCAGGTGATGTATGGCTGCGACGTGGGGCCCGACG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30334437 46 + 173848474 TCTCACACCATGCAGGTGATGTATGGCTGCGACGTGGGGCCCGACG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74831450 46 + 122973662 TCTCACATCCTCCAGGGAATGTTTGGCTGCGACGTGGGGCCCGACG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30485720 46 + 172585720 TCTCACACCTTCCAGAGGATGGTTGGCTGCGACCTGGGACCCGACG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       91932 46 +   1495729 TCTCACACCATCCAGACGATGTACGGCTGCGACCTGGGGCCGGACG
i macNem1.NW_012012100v1   I 190 C 0
s chlSab2.chr17             29304818 46 -  71996105 TCTCACACCTACCAGAGGATGTATGGCTGCGACCTGGGGCCCGACG
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1      479574 46 -   1771730 TCTCACGCGCTCCAGACGATGTACTGCTGCGACCTGGGGCCGGACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      189019 46 -    383796 TCTCACACGCTCCAGAGGATGTCTGGCTGCGACATGGGGCCTGACG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17152041 46 -  18854210 TCTCACACCTACCAGAGGATGTACGGCTGCGACGTGGGGCCGGACC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e saiBol1.JH378341             78754 2902 +    515838 I
e colAng1.NW_012115577v1       42604 438 -   1829203 M
e manLeu1.NW_012101121v1       75029  6 +    273075 I
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=177667.000000
s hg38.chr6_GL000254v2_alt   1145353 43 +   4827813 GGCGCTTCCTCCGCGGGTATGAACAGCACGCCTACGACAGCAA
s panTro5.chr6              30103810 43 + 175400573 GGCGCTTCCTCCGCGGGTATGAACAGCACGCCTACGACGGCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30334483 43 + 173848474 GGCGCTTCCTCCGCGGGTATGAACAGCACGCCTACGACGGCAA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74831496 43 + 122973662 GGCGTCTCCTCCGCGGGTATGAGCAGTATGCCTACGACGGCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30485766 43 + 172585720 GGCGCCTCCTCCGCGGGTATGAACAGTACGCCTACGACGGCAG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       91978 43 +   1495729 GGCGCCTCCTCCGCGGGTATGACCAGTCCGCCTACGACGGCAG
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29304864 43 -  71996105 GGCGCCTCCTCCGCGGGTATCACCAGTTAGCCTACGACGGCAA
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341             81656 43 +    515838 GGCGCCTTCTCCACGGGTAACACCAGTTCGCCTACGACGGCAA
i saiBol1.JH378341         I 2902 C 0
s cebCap1.NW_016107755v1      479620 43 -   1771730 GGCGCCTCCTCTTCGGGTATCACCAGATCGCCTACGACGGCAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      189065 43 -    383796 GGCGCCTTCTCCGCGGGTATCACCAGTACGCCTACGACGGCAA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17152087 43 -  18854210 GGCGCCTCCTCCGCGGGTACTATCAGGACGCCTACGACGGCGC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e colAng1.NW_012115577v1       42604 438 -   1829203 M
e manLeu1.NW_012101121v1       75029  6 +    273075 I
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=447156.000000
s hg38.chr6_GL000254v2_alt   1145396  96 +   4827813 GGATTACATCGCTCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACATGGCAGCTCAGATCACCAAGCGCAAGTGGGAGGCGGCCCGTCAGGC------------
s panTro5.chr6              30103853  96 + 175400573 GGATTACATCGCTCTGAACGAGGACCTGAGCTCCTGGACCGCGGCGGACATGGCAGCTCAGATCACCAAGCGCAAGTGGGAGGCGGCCCGTCGGCC------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30334526  96 + 173848474 GGATTACATCGCTCTGAACGAGGACCTGAGCTCCTGGACCGCGGCGGACATGGCAGCTCAGATCACCAAGCGCAAGTGGGAGGCGGCCCGTCGGCC------------
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74831539  96 + 122973662 CGATTACATCGCCCTGAACGAGGACATGCGCTCCTGGACCGCCGCGGACACCGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCTAATGTGGC------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30485809  96 + 172585720 GGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACATGGCGGCTCAGAACACCCAGCGGAAGTGGGAGGCGGCGGATGTGGC------------
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       92021  96 +   1495729 GGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACGGCGGCGGACATGGCGGCTCAGAACACCCAGCGGAAGTGGGAGGCGGCGGGTGTGGC------------
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29304907  96 -  71996105 GGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGATCTGGCGGCTCAGAACACCCAGCGGAAGTGGGAGGCGTCCGGTTGGGT------------
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1       43042  96 -   1829203 GGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGACATGGCGGCTCAGAACACCCAGCGGAAGTGGGAGGCGGCCGGTGCGGC------------
i colAng1.NW_012115577v1   M 438 C 0
s saiBol1.JH378341             81699  96 +    515838 GGATTACCTCGCCATGAACAAGGACCTGCGCTCCTGGACCCCCGCGGACCTGGCGGCTCAGATCTCCCAGCGCAAGTGGGAGGCGGAGAATGTGGC------------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      479663  96 -   1771730 GGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCTGCGGACACTGCGGCTCAGATCACCCAGCGCAAGTTCGAGGCGGCCAATGTGGC------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      189108  96 -    383796 GGACTACCTCGCCCTGAACGAGGACCTGCGCTCTTGGACGGCCGCGGACATGGCGGCTCAGCTCTCTCAGCGCAAGTTCGAGGAGGCCAATGTGGC------------
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17152130 108 -  18854210 GGACTACAGGGCCCTGAACCAGGACCTGCGCTCCTGGACCGCGGCGGACAAGACGGCTCAGATCACTCAGCTCAAGTGGGAGGCAGAGGGTGCGGCGGAGCGTTATGC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e manLeu1.NW_012101121v1       75029   6 +    273075 I
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=50396.000000
s hg38.chr6_GL000254v2_alt   1145492 14 +   4827813 GGAGCAGCTGAGAG
s panTro5.chr6              30103949 14 + 175400573 GGAGCAGTTGAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30334622 14 + 173848474 GGAGCAGTTGAGAG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74831635 14 + 122973662 TGAGCAAAGGAGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30485905 14 + 172585720 GGAGAGGATGAGAG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       92117 14 +   1495729 GGAGCAGTGGAGAG
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29305003 14 -  71996105 GGAGCAGTTCAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1       75035 14 +    273075 GGAGCAGTGGAGAG
i manLeu1.NW_012101121v1   I 6 I 71740
s colAng1.NW_012115577v1       43138 14 -   1829203 GGAACAGATGAGAG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             81795 14 +    515838 GGCGAAGATGAGCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      479759 14 -   1771730 TGAGAGGACAAGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      189204 14 -    383796 GGAGCAAAAGAGAG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17152238 14 -  18854210 GGAACACTGGAGGG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=1518941.000000
s hg38.chr6_GL000254v2_alt   1145506 263 +   4827813 CCTACCTGGAGGGCGAGTTCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCACAGGGCGCCTCCCGGATGGCCTGTAGATCTCCGGGGCTGGCCTCCCACAAGAAAGGGAGACAAATGGGACCAACACTAT-AATATCGCCC---TCCCTCTGGTCCTGAGGGAGAAGAATCCTCCTGGGTTT------------CCAGAGAGTGACTCTGAGGGTCCGCCGTGCTCT--TTGA-CACAATTAAGG
s panTro5.chr6              30103963 263 + 175400573 CCTACCTGGAGGGCGAGTTCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCACAGGGCGCCTCCCGGATCGCCTGTAGATCTCCGGGGCTGGCCTCCCACAAGAAAGGGAGACAAATGGGACCAACACTAT-AATATCGCCC---TCCCTCTGGTCCTGAGGGAGAAGAATCCTCCTGGGTTT------------CCAGAGAGTGACTCTGAGGGTCCGCCCTGCTCT--CTGA-CACAATTAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30334636 263 + 173848474 CCTACCTGGAGGGCGAGTTCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCACAGGGCGCCTCCCGGATCGCCTGTAGATCTCCGGGGCTGGCCTCCCACAAGAAAGGGAGACAAATGGGACCAACACTAT-AATATCGCCC---TCCCTCTGGTCCTGAGGGAGAAGAATCCTCCTGGGTTT------------CCAGAGAGTGACTCTGAGGGTCCGCCCTGCTCT--CTGA-CACAATTAAGG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74831649 266 + 122973662 CCTACCTGGAGGGCACCTGCGTGGAGTGGCTCCGCAGACACCTGGAGAATGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCATGGGGAGCCTCC-----------TCGATCTCCCGGGCTGGCCTCACACAAGGAGGGGAAGAAAATGGGACTACCACCAG-AATATCGCCC---TCCCTCCTGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTACCAGAGATTGACTCTGAGGGCCCACCCTGCTCTTCCTGG-GACAATTAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30485919 275 + 172585720 CCTACCTGGAGGGCGAGTGCGTGGAGTGGCTCCCTAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGACACGGGGCGCCTCCCTGATCGCCTGTAGATCTCCCGGGCTGGCCTCCCACAAGGAGGGGAGACAAATGGGATCAACACTAG-AATATCGCCC---TCCCTCTGGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTACCAGAGAGTGACTCTGAGGGTCCGCCCTGCTAT--CTGA-CACAATTAAGG
i rheMac8.chr4             C 0 N 0
s macNem1.NW_012012100v1       92131 278 +   1495729 CCTACCTGGAGGGCGAGTGCCTGGAGTCGCTCCGCAGACACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCACGGGGCGCCTCCCTGATCTCCTGTGGATCTCCCGGGCTGGCCTCCCACAAGGAGGGGAGACAAATGGGATCAACACTAGCAATAGCGCCCCCATCCCTCTGGTCCTGAGGGAGAGGAATCCTCCTGG--TTTCAGATCCTGTACAAGAGAGTGACTCTGAGGGCCCACCCTGCTCT--CTGACCACAATTAACG
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29305017 274 -  71996105 CCTACCTGGAGGGCGAGTGCCTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCACGGGGCGCCTCCCTGATCGCCTGTAGATCTCCCGGGCTGGCCTCCCACAAGGAGGGGAGACAAATGGGACCAACACTAG-AATATCGCCC---TCCCTCTGGTCCTGAGGGAGAGGAATCCTCCTGGGTTTTCAGATCCTGTACCAGAGAGTGACTCTGAGGGTCCGCCCTGCTCT--CTGA-CACAATTAAG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      146789 273 +    273075 CCTACCTGGAGGGCGAGTGCCTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCACGGGGCGCCTCCCTGATCGCCTGTAGATCTCCTGGGCTGGCCTCCCACAAGGAGGGGAGACAAATGGGACCAACACTAG-AATATCGTCC---TCCCTCTGGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGAT-CTGTACCAGAGAGTGACTCTGAGGTTCCGCCCTGCTCT--CTGA-CACAATTAAG-
i manLeu1.NW_012101121v1   I 71740 C 0
s colAng1.NW_012115577v1       43152 270 -   1829203 CCTACCTGGAGGGCCGGTGCGTGGAGTCGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCAGGTACCAGGGGCCACGGGGCGCCTCCCTGATCGCCTGTAGATCTCCGGGGCTGGCCTCCCACAAGGAGGGGAGACAAATTGGATCAACACTGT-AATATCGCCC---TCCCTCTGGTACTGAG-----GGAATCCTCCTGGGTTTCCAGATCCTGTACCAGAGAGTGGTTCTGTGGTTCCGCCCTGCTCT--CTGA-CACAGTTAAGG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             81809 269 +    515838 CCTACCTGGAGGGCAGGTGCCTGGAGTGGATCCGCAGACACCAGGAGAACGGGAAGGAGACACTGGAGCGCGCGGGTACCAGGGGCAACGGGGCGCCTCCCTGATCTCCTGTAGACCTCCCAGGCTGACCTCGCACAAGTAGCGGAGGGAAATGGTACCAACACTAG-AATATCGCCC---TCCCTCTGGTCCT------CAAGAATCCTCCTGGGTTTCCAGATCCTGTGCCAGAGAATGACTCTGAGGGTCCGCCCTGCTCT--CTGA-TACAATTAAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      479773 274 -   1771730 CCTATCTGGAGGGCGAGTGCCTGGAGTGGCTCCGCAGACACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACGAGGGTCCA-GGGGCACCTCCCTGATCGCCTGTACACCTCCCAGGCTGGCCTTGTAGAAGGAGGGGAGGAAAATGGGACCAACACTAG-AATATCTCCC---TCCCTCCGGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTACCAGAGAGTGACTCTGAGGGCCTTCCCTGTTCT--CTGA-TACAATTAAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      189218 275 -    383796 CCTACCTGGAGGGCAGGTGCCTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACACTGCAGCGCGCGGGTATCAGGGGCCAGCGGGAACCTCCCTGATCACCTGTAGACCTCCCAGGCTGGCCTTGCAGAAGGAGGGGAGGAAAATGGGACCAATATTAG-AGTATCACCC---GCCCTCCGGTCCTGAGGGAGAAGAATCCTCCTGGGTTTCCAGATCCTATACCAGAGAGTGACTTTGAGGGCCTGTCCTGTTCT--CTGA-TACAATTAAGG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17152252 272 -  18854210 TCTACCTGGAGGGCAGGTGCGTGGAGTCGCTCCGCAGACACCTGGAATACGGGAAGGACACGCTGCAGCGCGCGGGTACGAGTGG-CGCGGGGCGCGTCCCTCATCTCCTGTAGGTCTCCC-TGCTCCCAGTCCACAAGAAGGGGAGGAAAATGGGCCCGACCCTAG-AATATCGCCC---TCCCTCTGGTCCAGAGCAGGAAGACGCCCCCTGAGTGTCCAAATCCTGTACTAGACAGTGACTCTGAGCCCCTGTCCT-CCCT--CCGG-GACAGTTAAGG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=2395.000000
s hg38.chr6_GL000254v2_alt   1145769 1 +   4827813 G
s panTro5.chr6              30104226 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30334899 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74831915 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             29305291 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      147062 1 +    273075 G
i manLeu1.NW_012101121v1   C 0 C 0
s saiBol1.JH378341             82078 1 +    515838 G
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      480047 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      189493 1 -    383796 G
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17152524 1 -  18854210 A
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e colAng1.NW_012115577v1       43422 0 -   1829203 C
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macNem1.NW_012012100v1       92409 0 +   1495729 C
e macFas5.chr4             141029073 0 + 170955103 I

a score=254711.000000
s hg38.chr6_GL000254v2_alt   1145770  65 +   4827813 ATGAAATCT-CTGA-GGAA--ATGAAGG-GA-AGACAATCCC---TGGAATACTGATGAGTGG----------------------------------TTCCCTTTGAC
s panTro5.chr6              30104227  65 + 175400573 ATGAAATCT-GTGA-GGAA--ATGAAGG-GA-AGACAATCCC---TGGAATACTGATGAGTGG----------------------------------TTCCCTTTGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30334900  65 + 173848474 ATGAAATCT-GTGA-GGAA--ATGAAGG-GA-AGACAATCCC---TGGAATACTGATGAGTGG----------------------------------TTCCCTTTGAC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74831916  66 + 122973662 ATGAAGTCT-CTGAGGGAA--GGGAGGG-GA-AGACAATCCC---TGGAATACTGATCCGCGG----------------------------------TCCCCTTTGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30617235  65 + 172585720 ATAAAATCT-CTGA-GGGA--ATGAAGG-GA-AGACGATCCC---TCGAATACTGATCAGGGG----------------------------------TTCCCTTTGAC
i rheMac8.chr4             N 0 C 0
s macNem1.NW_012012100v1       92409  62 +   1495729 ATAAAATCT-CTGA-GGGA--ATGAAGG-GA-AGACGATCCC---T-GAATACTGATCACGGG----------------------------------TCCCTTT--GC
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29305292  65 -  71996105 ATAAAATCT-CTGA-GGGA--ATGAAGG-GA-AGACGATCCC---TCGAATACTGATCAGGGG----------------------------------TTCCGTTTGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      147063  65 +    273075 ATAAAATCT-CTAA-GGGA--ATGAAGG-AA-AGACGATCCC---TTGAATACTGATCAGGGG----------------------------------TTCCCTTTGCC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       43422  65 -   1829203 ATAAAATCT-CTGA-GGGA--ATGACTG-GA-AGACAATCCC---TCGAATACTGATCAGAGG----------------------------------TTCCCTCTGAC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             82079 105 +    515838 ATGAAGTCT-CTGA-GGGAGTGTGGAGGTGA-AGACAATCCCTCAGGGATTACTGATCAGGGAATTACTGACAATCCCTCAGAGAATACTGATCAGTTTCCCTTTGAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      480048  66 -   1771730 TTGCAGTCT-CTGA-GAGA--AAGGAGGGGA-AGTCAATCAC---AGGAATACTGATCAGGGG----------------------------------TTCCCTGTGAC
i cebCap1.NW_016107755v1   C 0 I 25
s aotNan1.NW_018496904v1      189494  65 -    383796 TTGCAGTCT-CTGA-GGGA--AAGGAGGCGA-AGTCAATCCC---TGGAATACTGATCAGGG-----------------------------------TTCCCTGGGAC
i aotNan1.NW_018496904v1   C 0 I 25
s otoGar3.GL873550          17152525  67 -  18854210 AAGAAGTCTCCCGG-GGAA--ACAGAGG-GACAGATAGTCCT---TGAAATACCGATCATTGA----------------------------------TTTTCCCCGAT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=80170.000000
s hg38.chr6_GL000254v2_alt   1145835 27 +   4827813 ACTGGCAGCAGCCTTGGGCCCCGTGAC
s panTro5.chr6              30104292 27 + 175400573 ACTGGCAGCAGCCTTGGGCCCCGTGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30334965 27 + 173848474 ACTGGCAGCAGCCTTGGGCCCCGTGAC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74831982 26 + 122973662 CCC-ACAGCAGCCTTGGGCACCGAGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30617300 27 + 172585720 ACCGGCAGCAGCCTTGGGCCCCGTGAC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       92471 26 +   1495729 ACCGGCAGCAGCCTTGGG-CCCGTGAC
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29305357 27 -  71996105 ACCGGCAGCAGCCTTGGGCCCCGTGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      147128 27 +    273075 ACCAGCAGCAGCCTTGGGCCCCGTGAC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       43487 27 -   1829203 ACCGGCAGCAGCCTTGGGCCCCGTGAC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             82184 26 +    515838 -CCCACAGCAGCTTTGGGCAACAAGCC
i saiBol1.JH378341         C 0 I 3
s otoGar3.GL873550          17152592 10 -  18854210 -CATGCGGCAG----------------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e aotNan1.NW_018496904v1      189559 25 -    383796 I
e cebCap1.NW_016107755v1      480114 25 -   1771730 I
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=685048.000000
s hg38.chr6_GL000254v2_alt   1145862 133 +   4827813 TTTTC----CTCTCAGG-CCTTGTTCTC-TGCTTCACACTCAATGTGCCTGGGGGTC-TGAGTCCAGCTCTTCTGAGTCCCTCAGCCTCCACT-CAGGTCAGGACCAGAAGT------CGCTGTTCCCTC-CTC----AGGGACTAGAATTT
s panTro5.chr6              30104319 133 + 175400573 TTTTC----CTCTCAGG-CCTTGTTCTC-TGCTTCACACTCAATGTGTGTGGGAGTC-TGAGTCCAGCTCTTCTGAGTCCCTCAGCTTCCACT-CAGGTCAGGACCAGAAGT------CGCTGTTCCCTC-TTC----AGGGACTAGAATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30334992 133 + 173848474 TTTTC----CTCTCAGG-CCTTGTTCTC-TGCTTCACACTCAATGTGCGTGGGGGTC-TGAGTCCAGCTCTTCTGAGTCCCTCAGCCTCCACT-CAGGTCAGGACCAGAAGT------CGCTGTTCCCTC-TTC----AGGGACTAGAATTT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74832008 134 + 122973662 TTTTC----CTCTCGGG-CCTTGTTGTC-TGCCTCACACTCAATGTTTGTCGGAGTC-TGACTCCAGCTCCTCTGAGTCCCTTGGCCTCCACT-CAGATCAGGACCAGAAGT------CCCTGCTACCCCGCTC----AGAGACTAGAACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30617327 133 + 172585720 TTTTC----CTCTCAGG-CCCTGTTCTC-TGCTTCACACTCAATGTGTGTGAGGGTC-TGAGTCCAGCTCCGCTGAGTCCCTCAGCCTCCACT-CAGGTCAGGACCAGAAGT------CACTGTTCCCTC-CTC----AGGGAACAGAATTT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1       92497 144 +   1495729 TTTTC----CTCTCAGGCCCCTGTTCTC-TGCTTCACACTCAATGTGTGTG-GGGTC-TGAGTCCAGCTCCGCTGAGTCCCTCAGCCTCCACTCCAGGTCAGGACTAGAAGTCCAGGCCCCTGTTCCCTC-CCCTCCAAGGGAACAGAATTT
i macNem1.NW_012012100v1   C 0 I 52
s chlSab2.chr17             29305384 134 -  71996105 GTTTC----CTCTCAGG-CCCTGTTCTCTTGCTTCACACTCAATGTGTGTGGGGGTC-TGAGTCCAGCTCCGCTGAGTCTCTCAGCCTCCACT-CAGGTCAGGACCAGAAGT------CACTGTTCCCTC-CTC----AGGGAATAGAATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      147155 134 +    273075 TTTTC----CTCTCAGG-CCCTGTTCTC-TGCTTCACACTCAATGTGTGTGGGAGTCTTGAGTCCAGCTCCTCTGAGTCCCTCAGCCTTCACT-CAGGTCAGGAGCAGAAGT------CACTGTTCCCTC-CTC----AGGGAATACAATTT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       43514 133 -   1829203 TTTTC----CTCTCAGG-CCCTGTTCTC-TGCTTCACACTCAATGTATGTAGGGGTC-TGAGTCCAGCTCCGCTGAGTCCCTCAGCCTCCACT-CAGGTCAGGACCAGAAGT------CACTGTTCCCTC-CTT----AGGGAATAGAATTT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             82213 138 +    515838 TTCCCGGTTCTCTCGGG-CCTGGTTCTC-TGCTTCACACTCAGTGTGTGTGGGGATC-TGACTCCAACTCCTGTGAGTCCCCTGGCCTCTACT-CAGGACAGGACCAGCAGT------CCCTCCTCCTCTGCTC----AGAGACTAGAACTT
i saiBol1.JH378341         I 3 C 0
s cebCap1.NW_016107755v1      480139 131 -   1771730 TTTTC----CCCTCCTG-CCTTGTCCTC-TGCTTCACACTCAATGTGTGCGGGGGTC-TGACTCCAGTTCCTCTGAGTCCCTTGGCCTCCACT-CAGATCAGGACCAGAAGT------CCCGGATCCC---CCC----TGAGACTAGAACTT
i cebCap1.NW_016107755v1   I 25 C 0
s aotNan1.NW_018496904v1      189584 133 -    383796 TTTTC----CTCTCCTG-CCTTGTCCTC-TGTCACACACTCAGTGTGTGCGGGAGTC-TGACTCCAGCTCCTCTGAGTCCCTCAGCCTCCACT-CAGATCAGGACCAGAAGT------CCCTGTTCCCCA-ATC----AGAGACTAGAACTT
i aotNan1.NW_018496904v1   I 25 C 0
s otoGar3.GL873550          17152602 123 -  18854210 TTTTT----CTCTCAGG-TCTTGTCCTC-TGC--CCCACTCAGTGTGTTTGGAGGTC-TGATTCCAGCCCTTCC-AGTCACTCAGACTCCACT-CAGGTCAGGA--------------CCCTGTTCTCCTACTC----AGAGACTGGAAGTT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073   0 + 170955103 I

a score=204948.000000
s hg38.chr6_GL000254v2_alt   1145995 45 +   4827813 TCCACGGAATAGGAGATTATCCCAGGTGCCTGTGTCCAGGCTGTT
s panTro5.chr6              30104452 45 + 175400573 TCCACGGAATAGGAGATTATCCCAGGTGCCTGTGTCCAGGCTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30335125 45 + 173848474 TCCACGGAATAGGAGATTATCCCAGGTGCCTGTGTCCAGGCTGTT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74832142 45 + 122973662 TCCAAGGAATAGGAGATTATCCCAGGTGCCTGTGTCCAGGCTGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30617460 45 + 172585720 TCCACGGAATAGGAGATTATCCCAGGTACCTCTGTCCAGGATGGT
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17             29305518 45 -  71996105 TCCACGGAATAGGAGATTCTCCCAGGTGCCTGTGTCCAGGATAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      147289 45 +    273075 TCCACGGAACAGGAGATTCTCCCAGGTGCCTGTGTCCAGGATAGT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       43647 45 -   1829203 TCCATGGAATAGGAGATTATCCCAGGTGCCTGTGTCCAGGATGGT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             82351 42 +    515838 TCCAAGGAAT---ACATTAACCCAGGTGCCTGTGCCCAGGCTGGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      480270 45 -   1771730 TCCCAGGAACAGGACATTATCCCAGGTGCCTGTATCCAGGCTGGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      189717 45 -    383796 TCCAAGGAAAAGGACATTATCCCAGGTGCCTGTGTCCAGGCTGGG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17152725 44 -  18854210 -TCAAGGAAGAGGACATCATACTAGACCCCTGGGTCTAGGCTGGT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macNem1.NW_012012100v1       92641 52 +   1495729 I
e macFas5.chr4             141029073  0 + 170955103 I

a score=344337.000000
s hg38.chr6_GL000254v2_alt   1146040 57 +   4827813 GTCTGGGTTCTGTGCTCCCTTCCCCACCCCAGGCGTCCTGTCCATTCTCAAGATGGC
s panTro5.chr6              30104497 57 + 175400573 GTCTGGGTTCTGTGCTCCCTTCCCCACCCCAGGCGTCCTGTCCATTCTCAAGATGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30335170 57 + 173848474 GTCTGGGTTCTGTGCTCCCTTCCCCACCCCAGGCGTCCTGTCCATTCTCAAGATGGC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74832187 57 + 122973662 GTCTGGGTTCTGTGCTCCCTTCCCCACCCCAGGTGTCCTGTTCATTCTCAGGATGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30617505 57 + 172585720 GTCTGGGTTCTGGGCTCCCTTCCCCACCCCAGGTGTCCTGTCCATTCTCAAGATGGT
i rheMac8.chr4             C 0 N 0
s macNem1.NW_012012100v1       92693 57 +   1495729 GTCTGGGTTCTGGGCTCCCTTCCCCACCCCAGGTGTCCTGTTCATTCTCAAGATGGC
i macNem1.NW_012012100v1   I 52 C 0
s chlSab2.chr17             29305563 57 -  71996105 GTCTGGGTTCTGGGTTCCCTTCCCCACCCCAGGTGCCCTGTTCATTCTCAAGATGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      147334 57 +    273075 GTCTGGGTTCTGTGCTCCCTTCCCCACCCCAGGTGTCCTGTCCATTCTCAAGATGGC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       43692 57 -   1829203 GTCTGGGTTCTGTGCTCCCTTCCCCACCCCAGGTGTCTTGTCCATTCTCAAGATGGC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             82393 57 +    515838 GTCTGGATTCTGTGCTCCCTTCCCCACCCCAGCTGTCCTGTCCATTCTCAGAATGGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      480315 57 -   1771730 GTCTGGGTTCTGTGCTCCCTTCCCTACCCCAGGTGCCCTGTCCTTTCTCAGGATGGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      189762 57 -    383796 GTCTGGGTTCTGTGCTCCCTTCTGCACCCCAGGTGTCCTGTCCATTCTCAGGATGGT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17152769 56 -  18854210 GTCTCGGTTTCTCATTCTCTTTCACGTCCCTGTTGTCCTGAATATTCTCAGGATGT-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=247225.000000
s hg38.chr6_GL000254v2_alt   1146097 44 +   4827813 CACATGCGTGCTGGTGGAGTGTCCCATGACAGATGC-AAAATGCC
s panTro5.chr6              30104554 44 + 175400573 CACATGCGTGCTGGTGGAGTGTCCCATGACAGATGC-AAAATGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30335227 44 + 173848474 CACATGCGTGCTGGTGGAGTGTCCCATGACAGATGC-AAAATGCC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a             74832244 44 + 122973662 CACATGCGCGCTACTGGGGTGTCCCATGAGAGATGC-AAAGTGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30486553 44 + 172585720 CACATGCGTGCTGGTGGAGCGTCCCATGACAGATAC-AAAATGCC
i rheMac8.chr4             N 0 C 0
s macNem1.NW_012012100v1       92750 44 +   1495729 CACATGTGTGCTGGTGGAGTGTCCCATGACAGATGC-AAAATGCC
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29305620 44 -  71996105 CACATGTGTGCTGGTGGACTGTCCCATGACAGATGC-AAAATGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1      147391 44 +    273075 CACATGCGTGCTAGTGGAGTATCCCATGACAGATGC-AAAATGCC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1       43749 44 -   1829203 CACATGCGTGCTGGTGGAGTGTCCCATGACAGATGC-AAAATGCC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341             82450 44 +    515838 CACATGGGAGCTGCTGGGGTGTCCCATGAGAGATGC-AAAGTGCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1      480372 44 -   1771730 CACATTGGAGCTGCTAGGGTGTCCCATGAGAGATGC-AAAATGTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      189819 43 -    383796 CACAT--GTGCTGCTGGGGTGTCCCATGAGAGATGCAAAAGTGCC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550          17152825 44 -  18854210 CACATGAGCGCTGGTGGAGTGCTGCTTCAGGGATGC-AAAGTGCC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                240797 2210 + 123392446 T
e cerAty1.NW_012002535v1      146178 3630 -    863181 M
e macFas5.chr4             141029073  0 + 170955103 I

a score=3455381.000000
s hg38.chr6_GL000254v2_alt  1146141 529 +   4827813 TGAATTTTCTGACTCTTCCTGTCAGACCCCCCCAAGA-----------CACATATGACCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAC-ACACGGAGCTCATGGAGACCAGGCCTGCAGGGG---ATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACCTGCCATGTGCAGCATGAGGGTCTGCCAGAGCCCCTCACCCTGAGATGGGGTAAGGAG---------------GG----AGATGGGGGTG---------------TCATGTCCCTT---AG----GGAAAGCCGGAGCCTCTCTGGAGAGCTTTAGCAGGG-TC--------------------AGGG-T--------------------CCCTCACCTTCCCCCCTTTTCCCAGAGCCATCTTCCCAGCCCACCATCCCCATCGTGGGCATCGTTGCTGGCCTGGTTCTACTTGTAGCTGTGGTCACTGGAGCTGTGGTCGCTGCTGTAATGTGGAGGAAGAAGAGCTCAGGTAAGGAAGG
s panTro5.chr6             30104598 530 + 175400573 TGAATTTTCTGACTCTTCCCGTCAGACCCCCCCAAGA-----------CACATATGACCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACGGAGCTCGTGGAGACCAGGCCTGCAGGGG---ATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACCTGCCATGTGCAGCATGAGGGTCTGCCCGAGCCCCTCACTCTGAGATGGGGTAAGGAG---------------GG----AGATGGGGGTG---------------TCATGTCTCTT---AG----GGAAAGCCGGAGCCTCTCTGGAGACCTTTAGCAGGG-TC--------------------AGGG-T--------------------CCCTCACCTTCCCCCCTTTTCCCAGAGCCATCTTCCCAGCCCACCGTCCCCATCGTGGGCATCGTTGCTGGCCTGGTTCTACTTGTAGCTGTGGTCACTGGAGCTGTGGTCGCTGCTGTAATGTGGAGGAAGAAGAGCTCAGGTAAGGAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30335271 528 + 173848474 TGAA-TTTCTGACTCTTCCCGTCAGA-CCCCCCAAGA-----------CACATATGACCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCAGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACGGAGCTCGTGGAGACCAGGCCTGCAGGGG---ATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACCTGCCATGTGCAGCATGAGGGTCTGCCCGAGCCCCTCACTCTGAGATGGGGTAAGGAG---------------GG----AGATGGGGGTG---------------TCATGTCTCTT---AG----GGAAAGCCGGAGCCTCTCTGGAGAGCTTTAGCAGGG-TC--------------------AGGG-T--------------------CCCTCACCTTCCCCCCTTTTCCCAGAGCCATCTTCCCAGCCCACCGTCCCCATCGTGGGCATCGTTGCTGGCCTGGTTCTACTTGTAGCTGTGGTCACTGGAGCTGTGGTCGCTGCTGTAATGTGGAGGAAGAAGAGCTCAGGTAAGGAAGG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74832288 548 + 122973662 TGAGTTTTCTGACTCTTCCTTTCAGACCCCCCCAAGA-----------CACACGTGACCCACCACTCTGTCTCTGAACATGAGGCCACCCTGAGGTGCTGGGCTCTGGGCTTCCACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAAACCCAGGACACGGAGCTGGTGGAGACCAGGCCTGCAGGAG---ATGGAAACTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAACAGAGATACATGTGCCATGTGCAGCACGAGGGGCTGCCTGAGCCCCTCACCCTGAGATGGGATAAGGAG---------------AG----AGATGGGGG-G---------------TCATGTCTCTT---AG----GGAAAGCAGGAACCCCTCTGGAGACCTTTAGCAGGG-TC--------------------AGGG-CTGGGTCCTGGAGGTCAGAA-CCCTCACATTCCCCTCCTTTCCCAGAGCTGTCTCCCCAGCCCACCATCCCCATTGTGGGTATCATTGCTGGCCTGGTTCTCCTTGGAGCTGTGGTCACTGGTGCTGTGGTCACTGCTGTGATGTGGAGGAAGAAGAGCTCAGGTGGGGAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30486597 530 + 172585720 TGAATTTTCTGACTCTTCCCATCAGACCCCCCCAAGA-----------CACATGTGACCCACCACCCCGTCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAAACTCAGGACACGGAGCTCGTGGAGACCAGGCCTGCAGGAG---ATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAAAGGAGCAGAGATACACCTGTCATGTGCAGCATGAGGGTCTGCCCAAGCCCCTCACCCTGAAATGGGGTAAAGAG---------------GG----AGATGGGAGTG---------------TCATGTCTCTT---AG----GGAAAGCCGGAGCCTTTCTAGAGACCTTTAGCAGGG-TC--------------------AGGA-C--------------------CCCTCACTTTCCCCTCTTTTCCCAGAGCCGTCTTCCCAGTCCACCATCCCCATCGTGGGCATCATTGCTGGCCTGGTTCTCCTTGGAGCTGTGGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAGGAAGAGCTCAGGTAAAGAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29882289 531 - 170955103 TAAATTTT----TTCCACCTCTGAGACTCTCCTCAGAGCAGCCATCAGCACTTGTGACCCATCAC-------CTAATGGGAAGGTCACCTTGAGGTGCCGGGCCCAGGGATTCTACCCAGCAGAGATCACGCTGATTTGACTGTGGGA--GGGCAGACCACACTCAGGACGTATAGCATGGGGACCCCGGGCCTCAGGGGA---ATGGGACCTTCTAGAAGTGGGTGGCTGTGCTGGTGGCTTCTGGGGAGGAGCAGGAATCGCTGTGCTGTGTGCTGCATAAGGGGCTGTTCAGGCCTCTTATACTGAGATGAGTACAAATG---------------GGTATAAGATGGAA--A---------------CCCCTTCAC-----AGAACTGGCAAGCAGGAGCTGTTCTGGA-CCCTGTGACAGGG-TCAGAGTTTTGACCTGCAGGTGGAGA-C--------------------CCCTCTCATTCCC-----TTCTCAGAACCCCCTTCCCAGCTCATCCTAATCATCATGGAAACCATTTCTGACTTAGAGCTACTTCCTGTTCTAGTTCTTGGA------------ACTGTGATGTGCAAGAAGTTG---TCAGGTATGGGAGG
i macFas5.chr4             I 1408 I 982
s macNem1.NW_012012100v1      92794 528 +   1495729 TGAATATTCTGACTCTTCCTATCAGACTCCCCGAAGA-----------CACATGTAACCCACCACCCCGTCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCGGCGGGATGGGGAGGACCAAACTCAGGACACGGAGCTCGTGGAGACCAGGCCTGCAGGAG---ATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAAAGGAGCAGAGATACACCTGTCATGTGCAGCATGAGGGTCTGCCCGAGCCCCTCACCCTGAGATGGGGTAAAGAG---------------GG----AGATGGGGGTG---------------TCATGTCTC-----AG----GGAAAGCCGGAGCCTCTCTGGAGACCTTTCGCAGGG-TT--------------------GGGA-C--------------------CCCTCACTTTCCCCTCTTTTCCCAGAGCTGTCTTCCCAGTCAACCATCCCCATCGTGGGCATCATTGCTGGCCTGGTTCTCCTTGGAACTGTGGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAGGAAGAGCTCAGGTAAAGAAGG
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29305664 530 -  71996105 TGAATTTTCTGACTCTGCCCATCAGAGCCCCCCAAGA-----------CACATGTGACCCACCACCCCGTCTCTGACCATGAGACCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGTGAGGAGCAAACTCAGGACACGGAGCTCGTGGAGACCAGGCCTTCAGGAA---ATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAAAGGAGCAGAGATACACCTGTCATGTGCAGCATGAGGGTCTGCGTGAGCCCCTCACCCTGAGATGGGGTAAAGAG---------------GG----AGATGGGGGTG---------------TCATGTCTCTT---AG----GGAAAGCCAGAGCCTCTCTGGAGACCTTTTGCAGGG-TC--------------------AGGA-C--------------------CCCTCACCTTCCCCTCTTTTCCCAGAGCCGTCTTCCCAATCCACCATCCCCATCGTGGGCATCATTGCTGGCCTGGTTCTGCTTGGAGCTGTGGTCACTGGAGCTGTGGTTGCTGCTGTGATGTGGAGGAGGAAGAGCTCAGGTGAGGAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     147435 530 +    273075 TGAATTTTCTGACTCTTCCCATCAGACCCCCCCAAGA-----------CACATGTGACCCACCACCCCGTCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAAACTCAGGACACGGAGCTCGTGGAGACCAGGCCTGCAGGAG---ATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAAAGGAGCAGAGATACACCTGTCATGTGCAGCATGAGGGTCTGCCCGAGCCCCTCACCCTGAGATGGGGTAAAGAG---------------GG----AGATGGGGGTG---------------TCATGTCTCTT---AG----GGAAAGCCGGAGCCTTTCTGGAGACCTTTCGCAGGG-TC--------------------AGGA-C--------------------CCCTCACCTTCCCCTCTTTTCCCAGAGCCGTCTTCCCAGTCCACCATCCCCATCGTGGGCATCATTGCTGGCCTGGTTCTCCTTGGAGCTGTGGTCACTGGAGCTGTGGTCACTGCTGTGATGTGGAGGAGGAAGAGCTCAGGTGAGGAAGG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      43793 531 -   1829203 TGAATTTTCTGACTCTTCCCATCAGACCCCCCCAAGA-----------CACATGTGACCCACCACCCCGTCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTATCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGAGAGGACCAAACTCAGGACACGGAGCTCGTGGAGACCAGGCCTACAGGGG---ATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAAAGGAGCAGAGATACACCTGTCATGTGCAGCATGAGGGTCTGCGTGAGCCCCTCACCCTGAGATGGGGTAAAGAG---------------GG----AGATAGGGGTG---------------TTATGTCTCTT---AG----GGAAAGCCAGAGCCTCTCTAGAGACCTTTAGCAGGG-TC--------------------AGGACC--------------------CCCTCACCTTCCCCTCTTTTCCCAGAGCCGTCTTCCCAGTCCACCATCCCCATCGTGGGCATCATTGCTGGTGTGGTTCTCCTTGGAATTGTGGTCACTGGAGCTGTGATTGCTGCTGTGATATGGAGGAGGAAGAGCTCAGGTGAGGAAGG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341            82494 550 +    515838 TGAATTTTCTGACTCTTCCCTTCAGATGCCCACAAGA-----------CACACATGACCCACCACCCCATTTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGAACACACTGACTTGGCAGTGACATGGAGAAGACCAGACCCAAGACATGGAGCTTGTGGAGACCAGGACCACAAGAG---ATGGAACTTTCCAAAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAAGAGCAGAGATACACCTGCCATCTGCAGACCGAGAGTCTACCCAAGCCCCTCACCCTGAGATAGGGTAAGAAG---------------GA----AGATGGGGGAA---------------TCATGTCTCTT---AG----GGAAAGCAGGAGCCCCTCTGGAGCCTTTCAGCAGGG-TC--------------------AGGG-CTGGAGCCTGGGGATCAGGGCCCCTCACCTTCCCCTCTTTTCCCAGAGCCATCTTCCCAGCCCACCATCCCAATCTTGGGCATTTTTTCTGGCCTGGTTGTCCTTGGAGCTGTCGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGGGGAAGAAGAGCTCAGGTGAGGACGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     480416 581 -   1771730 TCAATTTTCTGACTCTTCCCTACAGAGCCCCCCAAGA-----------CACACATGACCTACCACACCGTCTCTGACCATGAGGCCACCCTGAGATGCTGGGCCCTGGGGTTCTACCCTGCAGAGATCACACTGACCTTGCAGCGGGATGGGGAGGACCAGACCCAGGACATGGAGATGGTAGAGACCAGGCCTACAGGGG---ATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAGGAGAGATACACATGCCATGTGCACCATGAGGGGCTACCCAAGCCCCTCACCCTGAGATGGGGTAAGGAGGGGGTGGAGAAAGGAGA----GGATGGGGTAAGGAGGGGATGGGGTGTCATGTCTCTT---AG----GGAAAGCAGGATCCCCTCTATAGCCATTCAGcagggccc--------------------aggg-ctggggcctgggggtcagggcccCTCACCTTCCCCTCCTTTCCCAGAGCCGCCTTCCCAGCCCACCATCCCCATCGGGGGCATCGTTGCTGTTCTGGCTGTACTTGGAGCTGTAGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAGAGCTCAGGTGAGGAAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     189862 547 -    383796 TAAATTTTCTGACTCTTCCCTTCAGAACCCCCCAAAA-----------CACACGTGACCCACCACACCATCTCTGACTATGAGGCCACCCTGAGATGCTGGGCCCTTGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGAAATGGAGCTTGTGGAGACCAGGCCCACAGGGG---ATGGAAACTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACATGCCATGTGCAGCATGAGGGGCTGCCCGAGGCCCTCACCCTGAGATGGGGTAAGGA----------------GG----GGATGGGGTG----------------TCATGTCTCTT---AG----GGAAAGCAGGAGCCCCTCTGCATCCCTTCAGCAGGG-TC--------------------AGGG-CTGAGGCCTGGGG-TCTGGGCCCCTCACCTTCTCTTCCTTTCCCAGAGCCGTCTTCTCAGCCCACCATCCCCATCGTGGGCATCGTTGCTGGCCTGACTGTCCTTGGAGCTGTAGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAGAGCTCAGGTGAGGAAGG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17152869 551 -  18854210 TGAATTTTATGACTCTTCCCCTCAGATCCCCCAAAGA-----------CTCGTGTGACCCACCACCCCACCTCTGACAGTGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGATCAGACTCAGGACACGGAGCTTATAGAGACCAGGCCTTCCGGGGACAACAGAACCTTCCAGAAGTGGGCTGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCCATGTGCAGCATGAGGGGCTGCTGGAGCCCCTCACCCTGAGATGGGGTAAGAAA---------------GG----GAGTGGGAATG---------------TCATGTCTCTTCTCAA----GAAAAGCAGGGGCCCTTCTAGAGCCTTTCAGCAAGT-TC--------------------AGGG-CTGAGGTCTGGGGTCAGGC--CCTTCACCTTCCTGTCCTTTCCCAGAG---TCTTCCCAGCCCAGCATCTCCATGGTGGGCATCATTGCTGGCCTGGTTCTCCTTGGAACTGTGCTCACCGGAGCTGTGGTTGCTGCTGTGATGTGGAGGAGGAAGAGCTCAGGTAGGGAAAG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e cerAty1.NW_012002535v1     146178 3630 -    863181 M

a score=3101956.000000
s hg38.chr6_GL000254v2_alt  1146670 528 +   4827813 GGTGAGGAGTGTGGTCTGAGATTTCTTGTCTCACTGAGAGTTCCAAGCCCCAGGTAGAA--GTGCCCTGCCTGGTTACTGGGAAGCACCATCCACACTCATGGGCCTACCCAGC-CTGGGCCCTGTGTGCCAGCACTTACTCTTTTGTAAAGCACCTGTTACAATGAGGGACAGATTTATCACCTTGATGACTGTGGTGAT-GGGACCTGATCCCAGCAGTCACAAGTCACAGGGGAAGGTCC---CCGAGGACAGACCT-CAGAAGGGCGGTTGGTCCAGGACCCACATCTGCTTTCCTCATGTTTCCTGATCCCGCCCTGGGTCTGCAGTTGCACATTTCTGGAAACTTCTCTGGGGTCCAAGACTTGGAGGTTCCTCTAGGACCTTATGGCCCTGGCTTCTTTCTGGCATCTCACAGGACATTTTCTTCCCACAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATCCCTGAAATCCTTTGGATATTGTGTTTGGGAGCCCATGGGGGAG
s panTro5.chr6             30105128 528 + 175400573 GGTGAGGAGTGTGGTCTGAGATTTCTTGTCTCACTGAGAGTTCCAAGCCCCAGGTAGAA--GTGCCCTGCCTGGTTACTGGGAAGCACCATCCACACTCATGGGCCTACCCAGC-CTGGGCCCTGTGTGCCAGCACTTACTCTTTTGTAAAGCACCTGTTACAATGAGGGACAGATTTATCACCTTGATGACTGTGGTGAT-GGGACCTGATCCCAGCAGTCACAAGTCACAGGGGAAGGTCC---CCGAGGACAGACCT-CAGAAGGGCGGTTGGTCCAGGACCCACATCTGCTTTCCTCATGTTTCCTGATCCCGCCCTGGGTCTGCAGTTGCACATTTCTGGAAACTTCTCTGGGGTCCAAGACTTGGAGGTTCCTCTAGGACCTTAAGGCCCTGGCTTCTTTCTGGCATCTCACAGGACATTTTCTTCCCACAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATCCCTGAAATCCTTTGGATATTGTGTTTGGGAGCCCATGGGGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30335799 528 + 173848474 GGTGAGGAGTGTGGTCTGAGATTTCTTGTCTCACTGAGAGTTCCAAGCCCCAGGTAGAA--GTGCCCTGCCTGGTTACTGGGAAGCACCATCCACACTCATGGGCCTACCCAGC-CTGGGCCCTGTGTGCCAGCACTTACTCTTTTGTAAAGCACCTGTTACAATGAGGGACAGATTTATCACCTTGATGACTGTGGTGAT-GGGACCTGATCCCAGCAGTCACAAGTCACAGGGGAAGGTCC---CCGAGGACAGACCT-CAGAAGGGCGGTTGGTCCAGGACCCACATCTGCTTTCCTCATGTTTCCTGATCCCGCCCTGGGTCTGCAGTTGCACATTTCTGGAAACTTCTCTGGGGTCCAAGACTTGGAGGTTCCTCTAGGACCTTAAGGCCCTGGCTTCTTTCTGGCATCTCACAGGACATTTTCTTCCCACAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATCCCTGAAATCCTTTGGATATTGTGTTTGGGAGCCCATGGGGGAG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74832836 531 + 122973662 GGGGAGGAGTGGGGTCTGAGTTTTCTTGTCCCACTGGGGGTTTCAAGCCCCAGGTAGTAGTGTGTCCTGCCTGGTTACTGGGAAGCACCATCCACACTCATGGGCCTACCCAGC-CTGGGCCCTGTGTGCCAGCACTTACTCTTTTGT-AAGCACCTGTGACAATGAAGGACAGATTTATCACCTTGATGATTGTAGTGATGGGGACCTGACCCCAGCAGTCACAGGT--CAGGGGAAGGTCCCTGCTGAGGACAGACCT-TAGGAGGGCAGTTGGTCCAGGACCCACATCTGCTTTCCTTGTTTTTCCTGATCCTGCCCTTGGTTTGCAGTCACACATTTCTGGAAACTTCTCGAGGGTCCAAGACTAGGAAGTTCTTCTAGGACCTCATGGCCCTGCAACCTTTCTGGCCTCTCACAGGACGTTTTCTTCCCATAGATAGAGAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATCCCTGAGATCCTTGGGAAACTGTGTTTGGGAGCCCATAGGGGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30487127 533 + 172585720 GGTGAGGAGTGGAGTCTGAGATTTCTTGTCTCACTGAGGGTTTCAAGCCCCATGTAGAAGTGTGCCCTGCCTGGTTACTGGGAAGCACCATCCACACTCATGGGCCAACCCAGC-CTGGGCCCTGTGTGCCAGCACCTACTTTTTTGTAAAGCACCTGTTAAAATGAAGGACAGATAGATCACCTCGATTACGGTGGTGAT-GGGACCTGATCCCAGCAGTCACAAGTCACAAGGGAAGGTCCCTGGTGAGGACAGACCT-CAGGAGGGCAGTTGGTCCAGGATCCACACCTGCTTTCTTCATGTTTCCTGATCCCACCCTGGGTCTGCAGTCACACATTTCTGGAAACTTCTCTGGGATCCAAGACTAGGAGATTCCTCTAGGACCTTATGGCCCTGACTCCTTTCTGATATCTCACAGGACATTTTCTTCCCACAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATCCCTGAGATCCTTGGGATGTTGTGGTTGGGAGCCCATGGGGGAG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1      93322 532 +   1495729 AGTGAGGAGTGGAGTCTGAGATTTCTTGTCTCACTGAGGGTTTCAAGCCCCAGGCAGAAGTGTGCCCTGCCTGGTTACTGGGACGCACCATCCACACTCATGGGCCGACCCAGC-CTGGGCCCTGTGTGCCAGCACCTACTCTTTTGTAAAGCACCTGTTACAATGAA-GACAGATAGATCACCTCGATTACGGTGGTGAT-GGGACCTGATCCCAGCAGTCACAAGTCACAAGGGAAGGTCCCTGCTGAGGACAGACCT-CAGGAGGGCAGTTGGTCCAGGATCCACACCTGCTTTCTTCATGTTCCCTGATCCCGCCCTGGGGCTGCAGTCACACATTTCTGGAAACTTCTCTGGGGTCCAAGACTAGGAGATTCCTCTAGGACCTTATGGCCCTGGTCCCTTTCTGATATCTAACAGGACATTTTCTTCCCACAGATAGAAAAGGAGGAAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATCCCTGAGATCCTTGGGATATTGTGGTTGGGAGCCCATGGGGGAG
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29306194 533 -  71996105 GGTAAAGAGTGGGGTCTGGGATTTCTTGTCTCACTGAGGGTTTCAAGCCCCAGGTAGAAGTGTGCCCTGCCTGGTTACTGGGAAGCACCATCCACACTCATGGGCCGACCCAGC-CTGGGCCCTGTGTGGCAGCACCTACTCTTTTGTAAAGCACCTGTTAAAATGAAGGACAGATAGATCACCTCGATTACAGTGGTGAT-GGGACCTGATCCCAGCAGTCACTAGTCACAAGGGAAGGTCCCTGCTGAGGACAGACCT-CAGGAGGGCAGTTGGTCCAGGATCCACACCTGCTTTCTTCATGTTTCCTGATCCCGCCCTGGGTCTGCAGTCACACATTTCTGGAAACTTCTCTGGGGTCCAAGACTAGGAGATTCCTCTAGGACCTTATGGCCCTGGTTCCTTTCTGATATCTCACAGGACATTTTCTTCCCACAGATAGAAAAGGAGGGAGCTACGCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATCCCCGAGATCCTTGGGATGTTGTGGTTGGGGGCCCATGGGGGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     147965 526 +    273075 TGTGAGGAGTGGGGTCTGAGATTTCTTGTCTCACTGAGGGGTTCAAGCACCAGGTAGAAGTGTACCCTGTCTGGTTACTGGGAAGCACCATCCACACTCATGGGCCAACCCAGC-CTGGGCCCTGTGTGCCAGCACCTACTCTTTTGTAAAGCACCTGTTACAATGAAGGACAGATAGATCACCTCGATTACGGTGGTGAT-GGGACCTGATCCCAGC-------AGTCACAAGGGAAGATCCCTGCTGAGGACAGACCT-CAGGAGGGCAGTTGGTCCAGGACCCACACCTGCTTTCTTCATGTTTCCTGATCCCGCCCTGGGTCTGCAATCACACATTTCTGGAAACTTCTCTGGGGTCCAAGACTAGGAGATTCCTCTAGGACCTTATCGCCCTGACTCCTTTCTGATATCTAACAGAACATTTTCTTCCCATAGGTAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATCACTGAGATCCTTGGGATGTTGTGGTTGGGAGCCCATGGGGGAG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      44324 533 -   1829203 GGTGAGGAGTGGGGTCTGAGATTTCTTGTCTTACTGAGAGTTTCAAGCCCTAGGTAGAAGTGTACCCTGCCCGGTTCCTGGGAAGCGCCATCCACACTCATGGGCCGACCCAGC-CTGGGCCCTGTGTGTCAGCACTTACTCTTTTGTAAAGCACCTGTTAAAATGAAGGACAGATATATCACCTGGATTACGGTGGTGAT-GGGACCTGATCCCAGCAGTCACAAGTCACAAGGGAAGGTCCCTGCTGAGGACAGACCT-CAGGAGGGCAGTTGGTCCAGGACCCACACCTGCTTTCTTCATGTTTCCTGATCCCACCCTGGGTCTGCAATCACACATTTCTGGAAACTTCTCTGGGGTCCAAGACTAGGAGATTCCTCCAGGACCTTATGACCCTGGCTCCTTTCTGATATCTCACAGAACATTTTCTTCCCGCAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGAGGCTGATCCCTGAGATCCTTGGGATATTGTGGTTGGGAGCCCATGGTGGAG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341            83044 533 +    515838 GGTGAGGAGTGGGGTCTGAGATTTCTTGTCCCACTGAGGGTTCCAAGCCCCAGGTAGAAGTGTGTCCTGCCTGGTTACTGGGAAGCATCATCCACACTCATGAGCCGACCCAGC-CTGGGCCCTGTGTGCCAGCACTTACTCTTGTGTAAAGCACCTGTGACAATGAAGGACAGATGTGTCACCTTGATGATTGTGGTGATGGGTACCTGATCCCAGCAGTCACAGGTCACAGGGGAACCTCCCTGCTGAGGACAGTCCT-TAGGAGGGCAGTTGGTCCAGGACCCACACCTGCTTTCCTTGTTTTTCCTGATCCTGCCCTGAGTCTGCAGTCACACATTTCTGGAAACTTCTCTGGGGTCCAAGACTAGGAGGTTCCTCTAGGACCTCATGGCCCTGCCACCATTCTGGCCTCTCACTGAATATTTTATTCCCACAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGGATGAGGGAGGCTGATCCCTGAGATCACTGGGATATTGTGGTCAGGAGCCCGTGG-GGGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     480997 529 -   1771730 GGTGAGGAGTGGGGTCTGAGATTTCTTGTCCCACTGAGGGTTCCAAG-CCCAGGTAGAAGTGTGTCCTGCCTGGTTACTGGGAGGCATCATCCACACTCATGAGCCGACCCAGC-CTGGGCCCTGTGTGCCAGCACTTACTCTTGTGTAAAGCACCTGTGGCAGTGAAGGACAGATGTATCACCTTGATGACTGTGGTGATGGGGACCTGATCCCAGCAGTCACAGGTCACAAGGGAACGTCC---TTAGGGACAGTCCT-TAGGAGGGCAGTTGGTCCAGGACCCACAGCTGCTTTCCTTGTGTTTCCTGATCCTTCCCTGAGTCTTTAGTCACACATTTCCGGAAACTTCTCTGGGTTCCAAGACTAGGAGA-TCCTCTAGGACCTCATGGCCCTGCCATCTTTCTGACTTCTCACAGGACATTTTCTTCCCACAGATAAAAAACGAGGAAGCTACTCTCAGGCTGCAAGTAAGTATGAAGGCGGCTGATTCCTGAGCTCATTCGGATATTGTGGTTGGGAGCCCATGGCGGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     190409 533 -    383796 GGTGAGGAGTGGGGTCTGAGATTTCTTGTCCCACTGAGGGTTCCAAGCCCCAGGTAGAAGTGTGCCCTGCCTGGTTACTGGGAAGCACCATCCACACTCATGAGCTTACCCAGC-CTGGGCCCTGTGTGCCAGCACTTACTCTTGTGTAAAGCACCTGTGACAATGAAGGACAGATGTATCACCCTGATGATTGTGGTGATGGGGACCTGATCCCAGCAGTCACAGGTCACAAGGGAAGGTCCCTGCTGAGGACAGTCCT-TAGGGGGGCAGTTGGTCCAGGACCCACACCTGCTTTCCTTGTTTTTCCTGATGCTTCCTTGAGTCTGCAGTCACACATTTCTGGAACCTTCTCTGGGGTCCAAGATTAGGAGA-TCCTCTAGGACCTCATGGCCCTGCCACCTTTCTGACCCCTCACAGGGCATTTTCTTCCCACAGATAAAAAAGGAGGAAGCTACTCTGAGGCTGCAAGTAAGTATGAAGGAGGCTGATCCCAGAGATCGTTGGGATATTGTGGTCGGGAGCCCATGGGGGAG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17153420 525 -  18854210 GGGGAGTGGCAGGGTCTACATTTTCTTGTCCCACTGAGGTTTC--AACCCCAGGTAGCAGGGTGCCTCCTCCCATTACTGGGAAGTTTCATCCACACACACCTGCTTAGCCAGCTCAAGATCCTGGGTGCCAACACTTACTCTTTTGTATAACACATGTGAAAATGAAGGACAGA-GTTTTAATGTGATGATTGTGGCGATGGAGACCTGATCCCCACAGTCACTGGTCAGAGAGAAAGGACCTGGCTCAGGACAGACCTCCAGGAGGGCAGTTGATCCA------CTCTTTCCTTCCCCTGTGATTCCTGAACCTGCCCTGGCTCTTCAGT--CACAGTTCTAGAAACTTCTCTGGGATCCAAGACTAGGGGGTTCTGCTAGGACCTCATGGCCCTGCCTGCTCCCAGACCTCTCACAGGGCATTTTCTTCTCATAGGTGGAAAAGGAGGGAGCTACACTCAGGCTGAAAGTAAGTATGGAGGGTGGTGCTCTGTGAGGCCTTTGGGATAGTGTAGGCAGAAGTCCATGGTGGAG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e cerAty1.NW_012002535v1     146178 3630 -    863181 M
e macFas5.chr4             29882820 982 - 170955103 I

a score=1113395.000000
s hg38.chr6_GL000254v2_alt  1147198 194 +   4827813 CTCACCCACCC-CACAATTCTTCCTCTAGCCACATCTA---CTGTGGGATCTGACCAGGTCCTGTTTTTATTCTACTCCAGGCGGCAACAGTGCCCAGGGCTCTGATGTGTCTCTCACGG---CGTG-AAAGGTGAGACCTTGGGGGG---------------CCTGATGTGTGGGGGGTGTTGGGGGGGAACAGTGGACACAGCTGTGCTATGGGG
s panTro5.chr6             30105656 194 + 175400573 CTCACCCACCC-CACAATTCTTCCTCTAGCCACATCTA---CTGTGGGATCTGACCAGGTCCTGTTTTTATTCTACTCCAGGCAGCAACAGTGCCCAGGGCTCTGATGTGTCTCTCATGG---CTTG-AAAGGTGAGACCTTGGGGGG---------------CCTGATGTGTGGGGGGTGTTGGGGGGGAACAGTGGACACAGCTGTGCTATGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30336327 194 + 173848474 CTCACCCACCC-CACAATTCTTCCTCTAGCCACATCTA---CTGTGGGATCTGACCAGGTCCTGTTTTTATTCTACTCCAGGCAGCAACAGTGCCCAGGGCTCTGATGTGTCTCTCACGG---CTTG-AAAGGTGAGACCTTGGGGGG---------------CCTGATGTGTGGGGGGTGTTGGGGGGGAACAGTGGACACAGCTGTGCTATGGGG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74833367 194 + 122973662 CTCACCCAGCC-CACAATTCCTCCTCTAGCCACATCTC---CTGTGGGATCTGACCAGGTTCTGTTTTTGTTCTACCTCAGGTAGCCAAAGTGCCCAGGGCTCTGATGTGTCTCTCACAG---CTTGTAAAGGTGAGACCCTGGGGAG---------------GCTGATGTGTGTGGGTTGTT-GGGGGTAACAGTGGATATAGCTGTGCTATGGGG
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             30487660 194 + 172585720 CTCACCCAGCC-CACAGTTCCTCCTCTAGCCACATCTC---CAGCGGGATCTGACCAGGTCCTGTTTTTGTTCTACTCCAGGCAGTGACAGTGCCCAGGGCTCTGATGTGTCTCTCACGG---CTTGTAAAGGTGAGACCCTGGGGGG---------------CCTGATGTGTGTGGGGTGTT-GGGGGGAACAGTGGACGCAGCTGTGCTGTGGGG
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29883802 191 - 170955103 CTCGCCTATCC-CATGGTCCTACCTCAAATACAGTCTCCTTCTGCAGGCTCTG-CTGGGTCTTTTTATTGTCATTCTCCAGGTGGTGACAGGATCCTGGACACTGATGTGGTGCTCACAT---CTTGCTGAAATATGATCCC-TCGGA---------------CCTGATGCCAACAGGA-GTT-GAGG---ACGAGGAGCAGCTTTGGGCTATAGGG
i macFas5.chr4             I 982 I 1
s macNem1.NW_012012100v1      93854 194 +   1495729 CTCACCCAGCC-CACAGTTCCTCCTCTAGTCACATCTC---CAGAGGGATCTGACCAGGTCCTGTTTTTGTTCTACTGCAGGCAGTGACAGTGCCCAGGGATCTGATGTGTCTCTTACGG---CTTGTAAAGGTGAGATCCTGGGGGG---------------CCTGATGTGTGTGGGGTGTT-GGGGGGAACAGTGGACACAGCTGTGCTGTGGGG
i macNem1.NW_012012100v1   C 0 I 1
s chlSab2.chr17            29306727 194 -  71996105 CTCACCCAGCC-CACGGTTCCTCCTCTAGTCACATCTC---CAGAGGGATCTGACCAGGTCCTGTTTTTGTTCTACTCCAGGCAGTGACAGTGCCCAAGGTTCTGATGTGTCTCTTACGG---CTTGTAAAGGTGAGATCCCGGGGGG---------------CCTGATGTGTGTGGGGTGTT-GGGGGGAACAGTGGACGCAGCTGTGCTGTGGGG
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012101121v1     148491 194 +    273075 CTCACCCAGCC-CACAGTTCCTCCTCTAGTCACATCTC---CAGAGGGATCTGACCAGGTCCTGTTTTTGTTCTACTCTAGGCAGTGACAGTGCCCAGGGCTCTGATGTGTCTCTCACGG---CTTGTAAAGGTGAGATCCTGGGGGG---------------CCTGATATCTGTGGGGTGTT-GGGGGGAACAGTGGACTCAGCTGTGCTATGGGA
i manLeu1.NW_012101121v1   C 0 I 1
s colAng1.NW_012115577v1      44857 194 -   1829203 CTCACCCAGCC-CACAGTTCCTCCTCTAGCCACATCTC---CAGAGGGATCTGACCAGGTCCTGTTTTTGTTCTACTCCAGGCAGTGACAGTGCCCAAGGTTCTGATGTGTCTCTCACGG---CTTGTAAAGGTGAGACCCTGGGGGG---------------CCTGATGTGCGTGGAGTGTT-GGGGGGAACAGTGGACGCAGCTGTGCTGTGGGG
i colAng1.NW_012115577v1   C 0 I 1
s saiBol1.JH378341            83577 196 +    515838 CTCACCCAGCC-CACAGTTCCTCCTATAGCTACATCTC---CTGTAAGTTCTGACCAGGTCCTGTTTTCGTTCTATCCCTGGCAATGTCAGTGCCCAGGGCTCTGATGTGTCTCTCACATCACCTTGTAAAAGTGAGACCCTGAGGAC---------------CCTGATGTGTGTGGG-TGTT-GGGGAGAACAGTGTACACAGCTGTGCTCTGGGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     481526 197 -   1771730 CTCACCCAGCC-CACAATTCCTCCTCTAGCGGCGTTTC---CTGTGGGCTCTGACCAGGTTCTGTTTTTGTTCTACCCCAGGCAGCGACAGTGCCCAGGGCTCTGATGCGTCTCTCATGG---CTTGTAAAGGTGAGATCCTGGGGGA------------GGGGCTGATGTGTGTGGGTTGTT-GGGGGGAACATTGAGAACAGCTGTGTTATGGGG
i cebCap1.NW_016107755v1   C 0 I 31
s aotNan1.NW_018496904v1     190942 209 -    383796 CTCACCCAGCC-CACAATTCCTCCTCTAGCGGCATTTC---CTGTAGACTCTGACCAGGTTCTGTTTTTGTTCTACCCCAGGCAGCGACAGTTCCCAGGGCTCTGATGAGTCCCTCACGG---CTTGTAAAGGTGAGATCCTGGGGGGTGGGGGCAGGGCGGGGCTGATGTGTGTGGATTGTT-GTGGGGAACAGTGGGCACAGCTGTGTTATGCGG
i aotNan1.NW_018496904v1   C 0 I 1
s otoGar3.GL873550         17153945 187 -  18854210 --CTCCCAGCCACATAATTCCTCCTTTAGCCACATCTT---CTGTGGGCTCTGACCAGGATCTGTT-TTGTTCAACTCCAGGCAGTGACAGTGCCCAGGGATCCAACGTGTCTCTCACAA---CTTATAAAGGTGAGACCCT-GGGAG---------------TGTAATATAAGGGTGG-ATT----GGGACAGGGGGACACAGGTGGGCTATGGGG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e cerAty1.NW_012002535v1     146178 3630 -    863181 M

a score=120542.000000
s hg38.chr6_GL000254v2_alt  1147392 39 +   4827813 TTCTTT-GAATTTGATGTTTTGAGCATGCGATGGGCTG-CC
s panTro5.chr6             30105850 39 + 175400573 TTCTTT-GAATTTGATGTTTTGAGCATGCGATGGGCTG-CC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30336521 39 + 173848474 TTCTTT-GAATTTGATGTTTTGAGCATGCGATGGGCTG-CC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74833562 40 + 122973662 TTCTTT-GACTTGGATGTATTGAGCACATGATGGGCTGTTT
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30487855 40 + 172585720 TTCTTT-GACTTGGATGTATTGAGCATGTGATGGGCTGTTT
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29883994 40 - 170955103 ATCTTTGGATTTGAAGGTAGGGAATG-GTGATGGGCTGCCC
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1      94049 40 +   1495729 TTCTTT-GACTTGGATGTATTGAGCATGTGCTGGGCTGTTT
i macNem1.NW_012012100v1   I 1 C 0
s chlSab2.chr17            29306922 40 -  71996105 TTCTTT-GACTTGGATGTATTGAGCATGTGATGGGCTGTTT
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012101121v1     148686 26 +    273075 TTCT---------------TTGAGCATGTGATGGGCGGTTT
i manLeu1.NW_012101121v1   I 1 C 0
s colAng1.NW_012115577v1      45052 41 -   1829203 TTCCTTTGACTTGGATGCATTGAGCATGTGATGGGCTGTTT
i colAng1.NW_012115577v1   I 1 C 0
s saiBol1.JH378341            83773 36 +    515838 ---TTT-GAATCGAATGTATTGAGCATGTGATGGGCTCTT-
i saiBol1.JH378341         C 0 I 1
s aotNan1.NW_018496904v1     191152 39 -    383796 TTCTTT-GACTTGGATGTATTGAGCTGGTGATGAGTTGTT-
i aotNan1.NW_018496904v1   I 1 I 1
s otoGar3.GL873550         17154132 39 -  18854210 ATTCAT-AGGTGGGACATTTTGAATGTGTGGTGGGTTGTT-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e cebCap1.NW_016107755v1     481723 31 -   1771730 I
e cerAty1.NW_012002535v1     146178 3630 -    863181 M

a score=382375.000000
s hg38.chr6_GL000254v2_alt  1147431 77 +   4827813 AA--------AGTGTCATCCATTACTGGGACAGATATG----AATTTGTTCATGAATATTTTTTCTATAGTGTGAGACAGCTGCCTTGT
s panTro5.chr6             30105889 77 + 175400573 AA--------AGTGTCATCCATTACTGTGACAGATATG----AATTTGTTCATGAATATTTTTTCTATAGTGTGAGACAGCTGCCTTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30336560 77 + 173848474 AA--------AGTGTCATCCATTACTGTGACAGATATG----AATTTGTTCATGAATATTTTTTCTATAGTGTGAGACAGCTGCCTTGT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74833602 81 + 122973662 AA--------GGTGTGACCCCTCACTGTGAGTGATATGAATCAATTTGTTCATGAATATTTTTTCTACAGTGTGAGACAGCTGCCTTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30487895 77 + 172585720 AA--------AGTGTCACTCCTCACTGTGACGGATGTG----AATTTGTTCATGAATATTTTTTCTATAGTGTGAGACAGCTAACTTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29884034 82 - 170955103 TAGTGCTCAGGGTGTCAAGGCTGAGAGTGGCTGAGCTG----AATCTGGTCATTAACATGTTCTCCACAGTT---GAAAGCCGCCTTGT
i macFas5.chr4             C 0 I 3584
s macNem1.NW_012012100v1      94089 77 +   1495729 CA--------AGTGTCACCCCTCACTGTGACAGATATG----AATTTTTTCATGAATATTTTTTCTGTAGTGTGAGATAGCTGCCTTGT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29306962 77 -  71996105 AA--------AGTGTCACTCCTCACTGTGACGGATATG----AATTTGTTCATGAATATTTTTCCTATAGTGTGAGACAGCTAACTTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     148712 77 +    273075 AA--------AGTGTCACTCCTCACTGTGACGGATGTG----AATTTGTTCATGAATATTTTTTCTATAGTGTGAGGCAGCTGCCTTGT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      45093 77 -   1829203 AA--------AGTGTCACTCCTCACTGTGACGGATATG----AATTTGTTCATGAATATTTTTTCTGTAGTGTGAGACAGCTGCCTTGT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341            83810 76 +    515838 AG--------AGTGTCACCCCTCACTGCGACTGATATG----AATTTGTTCATGAA-TATTTTTCTATAGTGTGAGACAGCTGCCTTGT
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     481754 62 -   1771730 AA--------AGTGT-------------GACTGATATA----AATTTGTTCATG-A-TTTTTTTTTATAGTGTGAGACAGCTGCCTTGT
i cebCap1.NW_016107755v1   I 31 C 0
s aotNan1.NW_018496904v1     191192 64 -    383796 AA--------AGTGT-------------GACTGATAAA----AATTTGTTAATGAATTTTTTTTTTATAGTGTGAGGCAGCTGCCTTAT
i aotNan1.NW_018496904v1   I 1 C 0
s otoGar3.GL873550         17154171 71 -  18854210 ---------CAGTGTC-CCAATTGCTGTGACAAACCTG----AATTTGTTCCTTA----TTTTTTTATAGACTGAGACAGCTGCCTTGT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e cerAty1.NW_012002535v1     146178 3630 -    863181 M

a score=3313346.000000
s hg38.chr6_GL000254v2_alt  1147508 621 +   4827813 GTGGGACTGAGAGGCAAGATTTGTTCACACCTTCCCTTTGTGACTTGAAGAACCCTG------------------------------------------------------A-----CTTTCTGCAAAGGCACCTGAATGTGTCTGTGTTCCTGTAGGCATAATGTGTGGAGGAGGGGAGACCAACCCACCCTCATGTCCACCATGACCCTC-TTCCCCACGCTGATCTGTGTTCCCTCCCCAATCATCTTTCCTGTTCCAGAGAGGCGGGGCTGAGATGTCTCCATCTTTT--TCTCAACTTTAT-GTGCACTGAGCTGTAACTTCTTACTTCCCTCTTA-AAATTAGAATCTGAGTAAACATTTAC-TTTTTCAAATTCTTGCCATGAGAGGTTGATGACTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAACACATGAGAACCTTCCAGAGTCCA-TGTGTTTCTTGTGCTGA-TTTGTTGCAGGGGAGG-----------------------AGAATAGATGGGG-CTGTGCCTAGTGGGTGCTCAGGCCAGTATGGACTTTATGTGGTCACTGCTCAGCTGGGTCATCTTTGCTCCTTCATTCTCCTTGGCCCTTCAGTAGAAC----CTTGTCCCACCACCACCTGTGATCACAGGGAGTTGGATGTCACCTAGGGTGGTCCCTGCATACAAA
s panTro5.chr6             30105966 625 + 175400573 GTGGGACTGAGAGGCAAGAGTTGTTCACACCTTCCCTTTGTGACTTGAAGAACCCTG------------------------------------------------------ACTT-TCTTTCTGCAAAGGCACCTGAATGTGTCTGTGTTCCTGTAGGCATAATGTGTGGAGGAGGGGAGACCAACCCACCCTCATGTCCACCATGACCCTC-TTCCCCACGCTGATCTGTGTTCCCTCCCCAATCATCTTTCCTGTTCCAGAGAGGCGGGGCTGAGATGTCTCCATCTTTT--TCTCAACTTTAT-GTGCACTGAGCTGTAACTTCTTACTTCCCTCTTA-AAATTAGAATCTGAGTAAACATTTAC-TTTTTCAAATTCTTGCCATGAGAGGTTGATGACTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAGTAAATGGAACACATGAGAACCTTCCAGAGTCCA-TGTGTTTCTTGTGCTGA-TTTGTTGCAGGGGAGG-----------------------AGAATAGATGGGG-CTGTGCCTAGTGGGTGCTCAGGCCAGTATGGACTTTATGTGGTCACTGCTCAGCTGGGTCATCTTTGCTCCTTCATTCTCCTTGGTCCTTCAGTAGAAC----CTTGTCCCCCCACCACCTGTGATCACAGGGACTTGGATGTCACCTACGGTGGTCCCTGCATACAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30336637 625 + 173848474 GTGGGACTGAGAGGCAAGAGTTGTTCACACCTTCCCTTTGTGACTTGAAGAACCCTG------------------------------------------------------ACTT-TCTTTCTGCAAAGGCACCTGAATGTGTCTGTGTTCCTGTAGGCATAATGTGTGAAGGAGGGGAGACCAACCCACCCTCATGTCCACCATGACCCTC-TTCCCCACGCTGATCTGTGTTCCCTCCCCAATCATCTTTCCTGTTCCAGAGAGGCGGGGCTGAGATGTCTCCATCTTTT--TCTCAACTTTAT-GTGCACTGAGCTGTAACTTCTTACTTCCCTCTTA-AAATTAGAATCTGAGTAAACATTTAC-TTTTTCAAATTCTTGCCATGAGAGGTTGATGACTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAGCAAATGGAACACATGAGAACCTTCCAGAGTCCA-TGTGTTTCTTGTGCTGA-TTTGTTGCAGGGGAGG-----------------------AGAATAGATGGGG-CTGTGCCTAGTGGGTGCTCAGGCCAGTATGGACTTTATGTGGTCACTGCTCAGCTGGGTCATCTTTGCTCCTTCATTCTCCTTGGTCCTTCAGTAGAAC----CTTGTCCCCCCACCACCTGTGATCACAGGGACTTGGATGTCACCTACGGTGGTCCCTGCATACAAA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74833683 629 + 122973662 GTGGGACTGACAGGCAAGATTTGTTCATGCCTTCCCTTTGTGACTTCAAGAACCCTG------------------------------------------------------ACTTCTCTTTCTGCAAAGGCATCTGAATGTGTCTGTGTCCCTATAGGCATAATGTGAGGAGGTGGGGAGACCAGCCCACACCCGTGTCCACCATGACCCCCATTCCCCACACTGACCTACATTCCTTCCCCGATCACCTTTCCTGTTCCAGAGAAGTGGTGCTGGGATGTCTCCATCTCTG--TCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTACTTCCCTATTA-AAATTAGAATCTGAGTATAAATTTACTTTTTTCAAATTATTGCCATGACAGGTTGATGGGTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAAGACATAAGAACCTTCCAGAGTCCA-CGTGTTTCTTGTGCTGA-TTTGTTGCAGGGGAGG-----------------------AGAGTAGATGGGG-CTGTGCCCAGTGGGTGCTCAGGCCACCATGGGCTTTATGTGGTCACAGCTCAGCTGGGTCATCTTTGCTGCTCCATTGTCCTTGGCCCTTCAGTAGAAC----CTTGTCCCACCAGGACCTGTGATCACAGGGACTTGGATGTCACCTAGGGTGTTCCCTACACATAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30487972 626 + 172585720 GTGGGACTGCGAGGCAAGATTTGTTCACGCCTTCTCTTTGTGACTTGAAGAACCCTG------------------------------------------------------ACGT-TCTTTCTGCAAAGGCACCTGAATGTGTCTGTGTTCCTGTAGGCATAATGTGAGGAGGTGGGGAGAACACCCCATCCCCGTGTCCACCATGACCCTC-TTCTCCACACTGACCTGTGTTCCCTCCCCATTTATCTTTCCTGTTCCAGGGAGGTGGGGCTGGGATGTCTCTATCTCTG--TCTCAACTTCATTTTGCACTGAGCTGTATCTTCTTCCTTCCCTATTA-AAATTAGAACCTGAGTATAAATTTAC-TTTTTCAAATTATTATCATGAGAGGTTCATGAGTTAATTAAAGGAGAATATTCCTAAAATTTGAGAGACGAAATAAATAGAAGACATGAGAACCTTCCAGAGTCCA-CGTGTTTCTTATGCTGA-TTTGCTGCAGGGGAGG-----------------------ATAGTAGATGGGG-CTGTGCCTAGTTTGTGTTCCAGCCACCATGGGCTTTATGTGGTCACTGCTTGGCTGAATCATCTTTGCTTCTTCTTTGTCCTTGGCCCTTCAGTAGAAC----CTTGTCCCACCAAGACCTGTGATCACAGGGAGTTGGATGTCACCTAGGGCGGTCCCTGCATACAAA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1      94166 626 +   1495729 GTGGGACTGCGAGGCAAGATTTGTTCATGCCTTCTCTTTGTGACTTGAAGAACCCTG------------------------------------------------------ACTT-TCTTTCTGCAGAGGCACCTGAATGTGTCTGTGTTCCTGTAGGCATAATGTGAGGAGGTGGGGAGAACACCCCATCCCCATGTCCACCATGACCCTC-TTGCCCACGCTGACCTGTGTTCCCTCCTCATTTATCTTTCCTGTTCCGGGGAGGTGGGGCTGGGGTGTCTCTATCACTG--TCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTCCTTCCCTATTA-CAATTAGAACCTGAGTATAAATTTAC-TTTTTCAAATTCTTGCCATGAGAGGTTGATGAGTTAATTAAAGGAGAATATTCCTAAAATTTGAGAAAGAAAATAAATGGAAGACCTGAGAACCTTCCAGAGTCCA-CGTGTTTCTTATGCTGA-TTTGTTGCAGGAGAGG-----------------------AGAGTAGATGGGG-CTGTGCCCAGTTTGTGTTCCGGCCACCATGGGCTTTATGTGGTCACTGCTTGGCTGAATCATCTTTGCTCCTTCATTGTCCTTGGCCCTTCAGTAGAAC----CTTGTCCCACCAAAATCTGTGATCACAGGGAGTTGGATGTCACCTAGGGCGGTCCCTGCATACAAA
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29307039 625 -  71996105 GTGGGACTGCGAGGCAAGATTTG-TCATGCCTTCTCTTTGTGACTTGAAGAACCCTG------------------------------------------------------ACGT-TCTTTCTGCAAAGGCACCTGAATATGTCTGTGTTCCTGCAGGCATAATGTGAGGAGTTGGGGAGAACACCCCACCCCCGTGTCTACCATGAACCTC-TTCCCCACACTGACCTGTGTTCCCTCCCCATTTATCTTTCCTGTTCCAGAGAGGTGGGGCTGGGAAGTCTCTATCTCTA--TCTCAACTTCATTTTGCACTGAGCTGTAACTTCTTCCTTCCCTATTA-AAATTAGAACCTGAGTATAAATTTAC-TTTTTCAAATTCTTGCCATGAGAGGTTGATGAGTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAAGACCTGAGAACCTTCCAGAGTCCA-CGTGTTTCTTGTGCTGA-TTTGTTGCAGGGGAGG-----------------------AGAGTAGATGGGG-CTGTGCCCAGTTTGTGTTCCGGCCACCACGGGCTTTATGTGGTCACTGCTTGGCTGAATCATCTTTGCTCCTTCATTGTCCTTGGCCCTTCAGTAGAAC----CTTGTCCCACCAAGACCTGTGATCACAGGGAGTTGGATGTCACCTAGGGCGGTCCCTGCATACAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     148789 626 +    273075 GTGGGACTGCGAGGCAAGGTTTGTTCCCGCCTTCTCTTTGTGACTTGAAGAACCCTG------------------------------------------------------ACTT-TCTCTCTGCAAAGGCACCTGAATGTGTCTGTGTTCCTGTAGGCATAATGTGAGGAGGTGGGGAGAACACCCCATCCCCGTGTCCACCATGACCCTC-TTCCCCACGCTGACCTGTGTTCCCTCCCCATTTATCTTTCCTGTTCCAGGGAGGTGGGGCTGGGATATCTCTATCTCTA--TCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTCCTTCCCTATTA-CAATTAGAACCTGAGTATAAATTTAC-TTTTTCAAATTCTTGCCATGAGAGGTTGATGAGTTAATTAAAGGAGAAGATTCCTGAAATTTGAGAGACAAAATAAATGGAAGACCTGAGAACCTTCCAGAGTTGA-CGTGTTTCTTGTGCTGA-TTTGTTGCAGGGGAGG-----------------------AGAGTAGATGGGA-CTGTGCCCAGTTTGTGTTCCGGCCACCACAGGCTTTATGTGGTCACTGCTTGGCTGCGTCATCTTTGCTCCTTCATTGTCCTTGGCCCTTCAGTAGAAC----CTTGTCCCACCAAGACCTGTGATCACAGGGAGTTGGATGTCACCTAGGGCGGTCCCTGCATACAAA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      45170 680 -   1829203 GTGCGACTGAGAAGCAAGATTTATTCACGCCTTCTCTTTGTGATTTGAAGAACCCTGACTTTCTTTCTGCAAAGGCACCTGAATGTGTCTGTGTTCCTGTAGGGAACCCCAACTT-TCTTTCTGCAAAGGCACCTGAATGTGTCTGTGTTCCTGCAGGCATAATGTGAGGAGGTGGGGAGAACACCCCACCCCAGGGTCCACTATGACCCTC-TTCCCCACGCTGACCTGTGTTCCCTCCCCATTTATCTTTCCTGTTCCAGGGAGGTGGGGCTGGGATGTCTCTATCTCTG--TCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTCCTTCCCTATTA-AAATTAGAACCTGAGCATAAATTTAC-TTTTTCAAATTATTGCCATGAGAGGTTGATGAGTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAAGACCTGAGAACCTTCCAGAGTCCA-TGTGTTTCTTATGCGGA-TTTGTTGCGGGGGAGG-----------------------AGAGTAGATGGGG-CTGTGCCCAGTTTGTGTTCCGGCCACAATGGACTTTATATAGTCACTGCTTGGCTGAGTCATCTTTGCTCCTTTGTTGTTCTTGGCCCTTCAGTAGAAC----CTTGTCCCCCCAAGACCTGTGATCCCAGGGAGTTGGATGTCACCTAGGGTGATCCCTGCATAAAAA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341            83886 624 +    515838 GTGGGACTGAGAGGCAAGTTATGTTCACACCTTCCCTTTGTGACTTCAAGAGCCCTG------------------------------------------------------ACTTCTCTTTCTGAAAAGGCATCTGAATGTGTCTGTGTCCCTATAGACATAATGTGAGGAGGTGGGGAGACCAGCCCAGCCCCGTGTCCACCATGACCC-C-TTCCCCACACTGACCTGCATTCCTTTCCTGATCACCATTCCTGTTCCAGAGACCTGGGGCTGGGATGTCTCCATCTCTG--TCTCAATTTTATGGTACAATGAGTTCTAACTTCTTACTTTCCTATTA-ACATTAGAATCTGAATATA-GTTTAC-TTTTTCAGGTTATTTCCATGAGAGATTGATGGGTTAATTAAAGGAGAAGATTCCTGAAATTTGAGACACAAAATAAATGGAAGACCCAAGAACCTTCCACAGTCCA-CGTGTTTCTTGTGCTGA-TTTGTTGCAGGGGATG------------------------AAGTAGATGGGG-CTGTGCCCAGTGGGTGCGCAGGTCACCATGGGCTTTATGTGGTCACTGCTTGGCTGGGTCATCTTTACTGCTCCATTGTCCTTGATCCTTCAGTAGAAC----TTTGTCTTACCACGACCTGTGATCACAGGGACTCGGATGTCACCTAGTGTGGTTCCTACGCATAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     481816 627 -   1771730 GTGGGACTGAGAGGTAAGATTTATACACACTATCCTTTTGTGACTTCAAGAACCCTG------------------------------------------------------ACTTCTCTTTCTGCAAAGGCATCTGAATGTGTCTGTGTCCCTATAGGCATAATGTGAGGAGGTGGGGAGACGAGCCCAGCCCCGTGTCCACCATGACCC-C-TTCCCCACGCTAACCTGCATTCCTTCCCTGGTCACCTTTCCTGTTCCAGAGGCCTGGGGCTGGGATGTCTCCATCTCTATCTCTCAACTTCATGGTGCACTGAGCTGTAACTTTGTACTTTCCTGTTA-AAATTAGAATCTTAATATA-ATTTAC-TTTGTCAAATTATTTCTATGAGAGG-CGATGGGTTAATTAAAAGAAAATATTACTGAAATTTCAGAGACAAAATAAATGCAAGACCTGAGAACCTTCCACAGTCCA-CGTGTTTCTCGTGTCTA-TTTGTTGCAGGGGAGG------------------------GAGTAGATGGAG-CTGTGTCCAGTGGGTGCTCAGGCCACGGTTAGCTTTATGTGGCCACTGCTCAGCTGGGTCATCTTTGCAGCT--GTTGACCTTAGCCCTTCAGTAGACCCTTGCTTGTCACACCACAACCTATGATCACAGGGACATGGATGTCATCTATGGTGGTCTGCACAGATAAA
i cebCap1.NW_016107755v1   C 0 I 39
s aotNan1.NW_018496904v1     191256 620 -    383796 GTGGGACTGA---GCTAGATTTATTCACACCTTCGATTTGGGACTTCAAGAACCCTG------------------------------------------------------ACTTCTCTTACTGCAAAGGCATCTGAATGTGTCTGTGTCCCTATAGGCATAATGTGAGGAGGTGGGGAGACCAGCCCAGCCCCGTGTCCACCATGACCC-C-TTCCCCACGCTGACCTGCATTCCTTCCCCG-TCACCTTTCCTGTTCCAGAGACCTGGGGCTGGGATGTCTCCATCTCTG--TCTCAACTTTATGATGCACTGAGCTGTAACTTCTTACTTTCCTATTA-AAATTAGAATCTGAATGTT-ATTTAC-TTCTTTAAATTATTTCCATGAAACATTGATGGGTTAATTTAAGGAGAAGATTCCTGAAATTTGAGAGACAAAATAAATGGAAGACCTGAGAACCTACCACAGTCCA-CATGTTTCTTGTGCTGA-TTTGTTGCAGGGGAGG------------------------GAGTAGATGGGG-CTGTGCCCAGTGGGCGCTGAGGCCACCGTGGGCTTCATGTGGTCACTGCTTGACTGGGTCATCTTTTCTGCTCCATTCTCCTGGGACCTTCAGTAGAAC----TTTGTCCCACCACGGCCTGTGATCACAGGGACTTGAGTGTCACCTATGGTGGTCTCTACACATAGA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17154242 574 -  18854210 GTGGGACTAAG----------TGTTCATACCTCCCCTTTGTGACTTCAAGC-CTCTG------------------------------------------------------ACTTCTCTTTCTGCAAATGCTTCTGAATGACTCTGCATCCCTCTTTGCCTAATGTGAGAAGGCGGGGAGGCCAACATACTGCCATGTCTACTGTGACGCCT-TCTCCCACACTGACCTGTG-TCCCTTCCCAATTAGCTTTCTTGTTACAGAGTGGTAGGGCTGGGAGGTCTCTATCCCTG--TCTCAACTTTGTAGTGCACTGAGATG----------CTTCCCTAATGCAAATAAGAATTTGAATATAAATTTTT-TTCCTCAAATTCTTCCCATG----------------------------------------------------------GGAAGACCTGAGAACCTTCCAGAATCTGTTGTGTTTGCTGTGCTGAGTCTTTTGCAGGTGGGGGCAGGAGAAAGCTGGAGGAGCCAAGTGTGGACAGGGCCTGTGCCCAGTTGGTGCTCAGTCTATCATGGGCTTTATGTGGTCACTCCTTGGCAGGGTCATCCTCACTGTTCCACTGTCCATGCCCCTTCAGTAGAAC----CCTGTCCCAGCAGGACCTGCAATCACAGGAGCTGACACATGGCCCCGGATGGACCCTGAACATGGG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e cerAty1.NW_012002535v1     146178 3630 -    863181 M
e macFas5.chr4             29884116 3584 - 170955103 I

a score=132530.000000
s hg38.chr6_GL000254v2_alt  1148129 42 +   4827813 TCTCATTGTGGTATCAAGAGACT-AATTTTCAGACCT--GTCCAG
s panTro5.chr6             30106591 40 + 175400573 TCTCATTGTGGTATC--GAGACT-AATTTTCAGACCT--GTCCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30337262 40 + 173848474 TCTCATTGTGGTATC--GAGACT-AATTTTCAGACCT--GTCCAG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74834312 42 + 122973662 AGTCCTTCCAGTATCAAGAGACA-AATTTTCAGACCC--CTGTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30488598 42 + 172585720 TCTCCTTGTGGTATCAAGAGATA-AATGTTCAGACCT--GTCCAG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1      94792 42 +   1495729 TCTCCTTGTGTTATCAAGAGATA-AATTTTCAGACCT--GTCCAG
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29307664 39 -  71996105 T---CTTGTGGTATCAAGAGATA-AGTTTTCAGACCT--GTCCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     149415 42 +    273075 TCTCCTTGTGGTATCAAGAGACA-AGTTTTCAGACCT--GTCTAG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      45850 42 -   1829203 TCTCCTTGTGGTATCAACAGACA-AATTTTCAGACCT--GTCCAG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341            84510 42 +    515838 AGCCCTTGTGGTATCAAGAGACA-AATTTTCAGACCCCTGTGC--
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     191876 41 -    383796 AGTCCTTGTGGTATCTGGAGACA-AATTTTCAGACCCC-GTCT--
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17154816 42 -  18854210 AGTCTCTTTGATACCAAGACATAGAATTTTCACA-CT--GTCCAG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e cebCap1.NW_016107755v1     482443 39 -   1771730 I
e cerAty1.NW_012002535v1     146178 3630 -    863181 M
e macFas5.chr4             29884116 3584 - 170955103 I

a score=273944.000000
s hg38.chr6_GL000254v2_alt  1148171 53 +   4827813 CTCTTGCCCTCCTCCCAGGGCTCTTTCCTGGATTGTAGTTTTCATC-TTGTCTC
s panTro5.chr6             30106631 53 + 175400573 TTTTTGCCCTCCTCCCAGGGCTCTTTCCTGGGCTGTATTTTTCATC-TTGCCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30337302 53 + 173848474 TTTTTGCCCTCCTCCCAGGGCTCTTTCCTGGGCTGTATTTTTCATC-TTGCCTC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74834354 54 + 122973662 CTCTTGCCCTCCTTCCAGGTCTCTTTCCTGAATTGTATTTTCCATCTTTTTCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30488640 53 + 172585720 ATCTTGCCCTCCTCCCAGGGCTCTTTCCTGGATTGTATTTTCCACC-TTGTCTC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1      94834 53 +   1495729 ATCTTGCCCTCCTCCCAGGGCTCTTTCCTGGATTGTATTTTCCATC-TTGTCTC
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29307703 53 -  71996105 ATCTTGCCCTCCTCCCAGGGCTCTTTCCTGGATTGTATTTTCCATC-TTGTCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     149457 53 +    273075 ATCTTGCCCTCCTCCCAGCGCTCTTTCCTGGATTGTATTTTCCATC-TTGTCTC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      45892 53 -   1829203 ATCTTGCCCTCCTCCTAGGGCTCTTTCCTGGATTGTATTTTCCATC-TTGTCTT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341            84552 52 +    515838 CTCTTACCCTCCTTCCATGTCTCTGTTCCGGATTTTATTTTCCA-A-ATATCTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     482482 52 -   1771730 CTCTCACCCTCCTTCCAGGTCTCT-TCCTGGACTGTATTTTCTATC-TTTTCCC
i cebCap1.NW_016107755v1   I 39 C 0
s aotNan1.NW_018496904v1     191917 53 -    383796 CTCTCGCCCTCCTTCCAGGTCTCTTTCCTGGATTATATTTTCCATA-TTTTCCC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17154858 53 -  18854210 CTCTTTTCCTCCTTCTAGGGTTCTTTCCTAGATGGCATTTTCTATC-TTTTCCC
i otoGar3.GL873550         C 0 I 792
e micMur3.chr6               240797 2210 + 123392446 T
e cerAty1.NW_012002535v1     146178 3630 -    863181 M
e macFas5.chr4             29884116 3584 - 170955103 I

a score=1015226.000000
s hg38.chr6_GL000254v2_alt  1148224 196 +   4827813 CAATCTTTTTAAAGGAAGCAGATTCTGAAATTTGCAGAGAGGAGGGGTCCCATAGTTTCTCATCATAGTGAACTTTCTGTTGGAGCTCCTCTTCTGCTC----TCCTACTCTTCTTCCTGCCCTGAGTTG---TAGTAATCCTAGTGCTGGCTCCAATCCAAACTCATGGATTTACAAAGCAGAGTCTAATTTAGATTCATAC
s panTro5.chr6             30106684 196 + 175400573 CAATCTTTTTAAAGGAAGCAGATTCTGAAATTTGCAGAGAGGAGGGGTCCCATAGTTTCTCATCATAGGGAACTTTCTGTTGGAGCTCCTCTTCGGCTC----TCCTACTCTTCTTCCTGCCCTGAGTTG---TAGTAATCCTAGTGCTGGCTCCAATCCGAACTCATGGATTTACAAAGCAGAGTCTAATTTAGATTCATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30337355 196 + 173848474 CAATCTTTTTAAAGGAAGCAGATTCTGAAATTTGCAGAGAGGAGGGGTCCCATAGTTTCTCATCATAGGGAACTTTCTGTTGGAGCTCCTCTTCGGCTC----TCCTACTCTTCTTCCTGCCCTGAGTTG---TAGTAATCCTAGTGCTGGCTCCAATCCGAACTCATGGATTTACAAAGCAGAGTCTAATTTAGATTCATAC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74834408 195 + 122973662 CAACCTTCTTAAAGGAAGCAGATTCTGAAATTTGCAGAGAGGAGGGGTCCTGTAGTTTCTCATCATAGGTAACTTTCTGTTGGAACTCCTCTTCTGCTC----TCCTACTCTTCTTCCTG-CCTGAGTTG---TAGTAATCCCAGTGCTGGGTCCAATCCAAACTCATGCATTTATAAAGCAGAGTCTAATTTAGATTTATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30488693 195 + 172585720 CAATCGTTTTAACGGAACCGGATTCTGAAATTTGCAGAGAGGATGGGTTCCCTAGTTTCTCATCATAGGTAACTTTCTGTTGGAACTCCTCTTCTGCTG----TCCTACTCATCTCCCTG-CCTGAGTTG---TAGTAATCCTAGTGCTGGCTCCAATCCAAACTCAGGGATGTATAAAGCAGAGTCTAATTTAGATTCATAT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1      94887 196 +   1495729 CAATCGTTTTAAAGGAACCAGATTCTGAAATTTGCAGAGAGGATGGGTCCCCTAGTTTCTCATCACAGGTAACCTTCTGTTGGAGCTCCTCTTCTGCTG----TCCTACTCTTCTTCCTGCCCTGAGTTG---TAGTAATCCTAGCGCTGGCTCCAATCCAAACTCATGGATGTATAAAGCAGagtctaatttagattcgtat
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29307756 196 -  71996105 CAATCTTTTTAAAGGAAGCAGATTCTGAAATTTGCAGAGAGGATGGGTCCCCTAGTTTCTCATCACAGGTAACCTTCTGTTGGAGCTCCTCTTCTGCTC----TCCTACTCATCTTCCTGTCCTGAGTTG---TAGTAATCCTAGTGCTGGCTCCAATCCAAACTCATGGATGTATAAAGCAGAGTCTAATTTAGATTCGTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     149510 196 +    273075 CAGTCATTTTAAAGGAACCGGATTCTGAAATTTGCAGAGAGGATGGGTCCCCTAGTTTCTCATCACAGGTAACCTTCTGTTGGAGCTCCTCTTCTGCTG----TCCTACTCATCTTCCTGCCCTGAGTTG---TAGTAATCCTAGCGCTGGCTCCAATCCAAACTCATGAATGTATAAAGCAGAGTCTAATTTAGATTCATGT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      45945 196 -   1829203 CAATCTTTTTAAAGGAACCTGATTCTGAGATTTGCAGAGAGGATGGGTCCCCTAGCTTCTCGTCCTAGGTAACTTTCTGTTGGAGCTCCTCTTCTGCTG----TCCTACTCATCTTCCTGCCCTGAGTTG---TAGTAATCCTAGCGCTGGCTCCAATCCAAACTCATGGATGTATAAAGCAGAATCTAATTTAGATTCATAT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341            84604 197 +    515838 CAGTCTTCTTCACGAAAGCAGATTTGGAAACATACAGTGAAGAGGGGTCCATTTGCTTTTCATCGTAGGTAACTTTCTGTTAGAACTC--CTTCTCCTCTCTCTCCTACTCTTCTTCCTG-CCTGAATTG---TAGTAATCCCAGTGCTGCCTCCCATCCAAACCCATGGTTTTATAAAGCAGAGTCTAATTTAAATTCATAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     482534 192 -   1771730 CAACCTTCTT----AAAGCAGATTCTGATACTTGCAGAGAGGCGGGCTCCTGCAGTTTCTCATCGTAGGTAACTTTCTGTTGGAACT---CTTCTGCTCTCTTTCCTACTCTTCTTCCCG-CCTGAGTCG---TAGTAATCCTGGTGCTGTCTCCAGTCCAAACTCATGGATTTATAAAACAGAGTCTAACTTATATTCATAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     191970 181 -    383796 C---CTTATTAAATGAAGCAGATTCTGATACTTGCAGAGAGGAGGGCTCCCATAGTTTCTCATCATAGGTAACTTTCTGTTGGAACTC--CTTCTGCTC-------------TCTTCCTG-CCTGAGTTG---TAGTAATCCTAGTGCTGCCTCCAATCCATAATCATGGATTTATAAAGCAGAGTCTGACTTAGATTCATGT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17155703 191 -  18854210 CAATGTTTTTAAAGGAACCCGATTCTGGAATTAACAGAGAGAATGGATCCCATCACTTCCCATCTCATGTAAATTTCCT------CTTCTGCTCTGCTC----CCCTGCCC-CCTACCTGTCCTTAGTTGTTCTAGTAATCTTAGTGCCAACTCCATTCCAAACTCATAGATTTCTAAATCAGGCTCTAAGTTAG-TTTATAC
i otoGar3.GL873550         I 792 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e cerAty1.NW_012002535v1     146178 3630 -    863181 M
e macFas5.chr4             29884116 3584 - 170955103 I

a score=1102923.000000
s hg38.chr6_GL000254v2_alt  1148420 171 +   4827813 GTGGTTGGAAAATTGTACCCATAAGCCTAGGGTTATCTTTCCTGAAGAGAAAAATATGGTTGTGTGCTGCAGTGTGCAggagggttggtgtgggaggaggtagg-------gagggagggaggACACACAAGCAGTCCTGGTGAGAAAAGCACTGGCGGCATCGATGTCCACATGAGA
s panTro5.chr6             30106880 167 + 175400573 GTGGTTGGAAAATTGTACCCATAAGCCTAGGGTTATCTTTCCTGAAGAGAAAAATATGGTTGTGTGCTGCAGTGTGCAggagggttggtgtgggaggaggt-----------agggagggaggACACACAagcagtcctagtgagaaaagcactggcggcatcaatgtccacatgaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30337551 167 + 173848474 GTGGTTGGAAAATTGTACCCATAAGCCTAGGGTTATCTTTCCTGAAGAGAAAAATATGGTTGTGTGCTGCAGTGTGCAggagggttggtgtgggaggaggt-----------agggagggaggACACACAagcagtcctagtgagaaaagcactggcggcatcaatgtccacatgaga
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74834603 163 + 122973662 GGGGTTGGAAAATTGGACCCACAAGCCTAGGATGATCTCTCCTGAACAGAAAAATATGGCTGTGTGCTGCAGTGTGCAGGAGGGTTGGTGTGGGAGGAGGT---------------GGGGAGGACACACAAGCAGCCCTGGTGAGAAAAGCACTGGCAGCACTGATGTTGGTGTGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30488888 170 + 172585720 GTGGTTGGAAAATTGTACCCATCAGGCTAGGGTTATTGTTCCTGAAGAGAAAAATATGGTTGTGTGCTGCAGTGTGCAGGAGGGTTGGTGTGGGAGGAGGG-GG-------AAGGAAGGGAGGACGCACAAGCAGCCCTGGGAAGAAAAGCACTGGCGGCATCGATGTTCacatgaaa
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1      95083 169 +   1495729 gtggttggaaaattgtacccataaggctagggttattgttcctgaagagaaaaatatggttgcgtgctgcagTGTGCAGGAGGGTTGGTGTGGGAGGAGGG-GG-------AA-GAAGGGAGGATGCACAAGCAGCCCTGGTGAGAAAAGCACTGGCGGCATCGATGTCCACGTGAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     149809 170 -    863181 GTGGTTGGAAAATTGTACCCATAAAGCTAGGGTTATTGTTCCTGAAGAGAAAAATATGGTTGTGTGCTGCAGTGTGCAGGAGGATTGGTGTGGGAAGAGGG-GA-------AAGGAAGGGAGGACGCACAAGCAGCCCTGGTGAGAAAAGCACTGGCGTCATCGATGTCCACGTGAAA
i cerAty1.NW_012002535v1   M 3630 C 0
s chlSab2.chr17            29307952 170 -  71996105 GTGGATGGAAAATTGTACCCATAAGGCTAGGGTTATTGTTCCTGAAGAGAAAAATATGGTTGTGTGCTGCAGTGTGCAGGAGGGTTGGTGTGGGAGGAAGG-GG-------AAGGAAGGGAGGACGCACAAGCAGCCCTGGTGAGAAAAGCACTGGCGGCATCGATGtccacatgaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     149706 170 +    273075 GTGGTTGGAAAATTGTACCCATAAAGCTAGGGTTATTGTTCCTGAAGAGAAAAATATGGTTGTGTGCTGCAGTGTGCAGGAGGATTGGTGTGGGAAGAGGG-GA-------AAGGAAGGGAGGACGCACAAGCAGCCCTGGTGAGAAAAGCACTGGCGTCATCGATGTCCACGTGAAA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      46141 171 -   1829203 GTGATTGAAAAATTGTACCCATAAGGCTAGGGTTATTTTTCCTGAAGAGAAAAATATGGCTGCGTGCTGCAGTGTGCAggagggttggtgtgggaggagggagg-------gaggaagggaggATGCACAAGCAGCCCTGGTGAGAAAAGCACTGGTGGCATCGATGTCCACGTGAAA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341            84801 175 +    515838 GTGGCTGGAAAATTGGACCCATAAGCCTAGGGTTATCTTTCCTGAAGAGTAAAATACGGTTGTGTGCTGCAGCGTGCAGGAGGGTTGGTGTGGGAggaaggagggagg---gagggagggagggCACACACGCAGCCCTGGTGAGAAAAGCTCTGGCAGCACTGATGtcagtgtgaga
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     482726 178 -   1771730 ATGGTTGGAAAATTGGACCCGTAAGCCTAGCATTATCTTTCCTGAAGAGAAAAATATGGTTGTGCGCTGCAGCGTGCAGGAGGGTTGGTGTGGGAGGAGGGAGGGAGGAGAgagggagggagggcacacaagcagcccgggtgagaaaagctctggcagcactgatgtcagtgtgaga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     192151 171 -    383796 GTGGTTGGAAAATTGGAGCCATAAACCTAGGGTTATCTTGCCTGAAGAGAAAAATATGGTTGTGTGCTGCAGCGTGCAggagggttggtgtgggaggagggagg-------gagggagggaggACACACACGCAGCCCTGGTGAGAAAAGCTCTGGCAGCACTGATGtcagtgtgaga
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17155894 163 -  18854210 TTGTTTGCAAAATTGGACCCAT-AGGCAAGGATTGTTCTTCATGAGGAGAGAAATAGCACTGTGTGCTGCAGAGTGCAGGAGGGTCAGCGTGGAAGGGAGG-GT-------AAGGGAGGG------CACACACAGCACTGGGGAGAAAAGCTCAGGCAGCATTGATGTCAGTGTGAGA
i otoGar3.GL873550         C 0 I 41840
e micMur3.chr6               240797 2210 + 123392446 T
e macFas5.chr4             29884116 3584 - 170955103 I

a score=911643.000000
s hg38.chr6_GL000254v2_alt  1148591 158 +   4827813 TGATGTTGTTCTTTAGCTGCCACAAAACAGCATTTGCCCTGAGGCTACCTTAACAAAGATATTGGCTTTAGAATAGAGAAGTGCTCTACAGTGAtcattcattcaactgacatttgttgtctgctagggatatgactgcttttgcgtttagaaagcat
s panTro5.chr6             30107047 158 + 175400573 tgatgttgttctttagctgccataaagcagcatttgccctgaggctaccttaacaaagatattggcttcagaatagagaagTGCTTTACAGTGAtcattcattcaactgacatttgttgtctgctagggatatgactgcttttgcatttagaaagcat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30337718 158 + 173848474 tgatgttgttctttagctgccataaagcagcatttgccctgaggctaccttaacaaagatattggcttcagaatagagaagTGCTTTACAGTGAtcattcattcaactgacatttgttgtctgctagggatatgactgcttttgcatttagaaagcat
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74834766 130 + 122973662 CGATGTTGTTCTTTA----------------------------GCTACGTTAATAAAGATATTGCCTTTCGGATAGGGAGGTGCTCTACAGTGAtcattcattcaactgacatttgttgtctgctaggtatatgactgtttttgcacttagaaaacat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30489058 154 + 172585720 tga---tgttctttagctgccacgaaacagcatttttcctgaggctacattgataaaaatattggctttagaatagggaggtGCTCTACAGTGAtcatt-attccactgacatttgttgtctgctagggatatgactgcatttgcatttagaaagcag
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1      95252 158 +   1495729 TGATGTTGTTCTTtagctgccatgaaacagcatttgccctgaggctacattaataaaaatattggctttagaatagggaggtGCTCTACAGTGAtcattcattccactgacatttgttgtctgctagggatttgactgcttttgcatttagaaagcag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     149979 158 -    863181 TGATGTTGTTCTTtagctgccacaaaacagcatttaccccgacgctacattaataaaaatattggctttagaatagggaggtGCTCTACAGTGATCATTCATTCCAATGACATTTGTTGTCTGCTAGGGATATGACTGCTTTTGCATTTAGAAAGCAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29308122 158 -  71996105 tgatgttgttctttagctgccatgaaacagcatttgccctgaggctacattaataaaaatattggctttagaatagggaggtGCTCTGCAGTGAtcattcattccactgacatttgttgtctgctagggatatgactgcttttgcatttagaaagcag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     149876 158 +    273075 TGATGTTGTTCTTTAGCTGCCACAAAACAGCATTTACCCCGACGCTACATTAATAAAAATATTGGCTTTAGAATAGGGAGGTGCTCTACAGTGATCATTCATTCCAATGACATTTGTTGTCTGCTAGGGATATGACTGCTTTTGCATTTAGAAAGCAT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      46312 158 -   1829203 TGATGTTGTTCTTtagctgccagaaaacagcatttactctgaggcaacattaataaaaatattggctttagaatagggaggtGCTCTACAGTGAtccttcattccactgacatttgttgtctgctagggatatgactgcttttgcatttagaaagcat
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341            84976 158 +    515838 tgatgttgttctgtagctgccacaaaacagcatttggcctgaggctacattaataaagacactgcctttagaatagggaggtGCCCTACAGTGATCATTCATTCAACTGACATTTGTTGTCTGATAGTTATAAGACTATTTTCTCCTTGAGAAAACAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     482904 154 -   1771730 tgaggttgctctgtaactaccaaaaaacagcatttggccagaggctacattaacaaagatattgcttttagaatagggaggtTCCCTACAGTGA----tcattcaactgacatttgttgtctgctaggtatatgactggttttgcattcagaaaacat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     192322 158 -    383796 tgatgttgttctgtagctgccacaaaacagcatttggcctgaggctacattaataaagatattgcctttagaatagggaggtGCCCTGCAGTGATCATTCGTTCAACTGACATTTGTTGTCTGCTAGGTATATGACTGCTTTTGCATTTAGAAAACAT
i aotNan1.NW_018496904v1   C 0 I 37029
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17156057 41840 -  18854210 I
e macFas5.chr4             29884116 3584 - 170955103 I

a score=624273.000000
s hg38.chr6_GL000254v2_alt  1148749 126 +   4827813 cattaaggtgaaaacagaaaaatttctggtgttgtggtacatatgttctagATGCTagcttgtctaacccgtagctcgcaggctgaatgtggcccaggacagttttgaatgtgAGGA-G-TTTTTGCT
s panTro5.chr6             30107205 126 + 175400573 cattaaggtgaaaacagaaaaatttctggcgttgtggtacatatgttctagATGCTagcttgtccaacccatagctcgcaggctgaatgtggcccaggacagttttgaatgtgAGGA-G-TTTTTGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30337876 126 + 173848474 cattaaggtgaaaacagaaaaatttctggcgttgtggtacatatgttctagATGCTagcttgtccaacccatagctcgcaggctgaatgtggcccaggacagttttgaatgtgAGGA-G-TTTTTGCT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74834896 127 + 122973662 cattaaagtaaaaacagaaaaatttctggcctcgtggtgtatacgttctagatgcaagcttgtccaacccacagctctcgggctgcatgtggcccaggacagctttgaaggtgagaa-gatttttgct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30489212 126 + 172585720 cattaaagtcaaaacagaaaaatttctggcattgtggtgcatacattctagATGGaagcttgtccaacccaaggcttgtgggctgaatgtggcccaggacagttttgaacgtgAGGA-G-TTTTTGCT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1      95410 126 +   1495729 cattaaagtgaaaacaaaaaaatttctggcattgtggtacatacattctagATGGaagcttgtccaacccgcagctcgtgggctgaatgtggcccaggacagttttgagtgtgAGGA-G-TTTTTGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     150137 126 -    863181 CATTAAAGTAAAAACAGAAAAATTTCTGGGGTTGTGGTGCATACGTTCTAGATGcaagcttgtccaacctgcagctcgtgggctgcatgtggcccaggacagttttgaatgtgAGGA-G-TTTTTGAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29308280 126 -  71996105 cattaaagtcaaaacagaaaaatttctggcattgtggtgcatacattctagATGcaagcttgtccaacctgcggctggtgggctgaatgtggcccaggacagttttgaacgTCAGGA-G-TTTTTGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     150034 126 +    273075 CATTAAAGTAAAAACAGAAAAATTTCTGGGGTTGTGGTGCATACGTTCTAGATGcaagcttgtccaacctgcagctcgtgggctgcatgtggcccaggacagttttgaatgtgAGGA-G-TTTTTGAT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      46470 126 -   1829203 cattaaagtaaaaacagaaaaatttctggcgttgtggtgtatacgttctagATGcaagcttgtccaacccgcggctcgtgggctgaatgtggcccaggacagttttgaatgtgAGAA-A-TTTTTGCT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341            85134 127 +    515838 CATTAAAGTTAAAACAGAAAAAATATCAGACTTCCAGTTTATATGTTCTAGATGcaagcttgtccaacttgcagctcacaggctgcatgtggcccaggacagctttgaatgtgaagacg-tttttgct
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     483058 127 -   1771730 cattaaagtaaaaatagaaaactttccagccttccggtgtatatgttctagatgcaagcttgtccaacctatggctcacaggctgcatgtggcccaggacagcttcaaatgtgaggatg-tttttgct
i cebCap1.NW_016107755v1   C 0 N 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17156057 41840 -  18854210 I
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e macFas5.chr4             29884116 3584 - 170955103 I

a score=50084.000000
s hg38.chr6_GL000254v2_alt  1148875 12 +   4827813 TTTCTGTGGCGG
s panTro5.chr6             30107331 12 + 175400573 TTTCTGTGGCGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30338002 12 + 173848474 TTTCTGTGGCGG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74835023 12 + 122973662 tatctgtggtgg
i nomLeu3.chr1a            C 0 N 0
s rheMac8.chr4             30489338 12 + 172585720 TCTCTGTGGCAG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1      95536 12 +   1495729 TCTCTGTGGCGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     150263 12 -    863181 TCTCTGTGGCGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29308406 12 -  71996105 TATCTGTGGCCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     150160 12 +    273075 TCTCTGTGGCGG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      46596 12 -   1829203 TCTCTGTGGCAG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341            85261 12 +    515838 tatctgtggtgg
i saiBol1.JH378341         C 0 N 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17156057 41840 -  18854210 I
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e macFas5.chr4             29884116 3584 - 170955103 I

a score=974873.000000
s hg38.chr6_GL000254v2_alt  1148887 258 +   4827813 ACCTGAGACCTGGAGTGAGTGCACCCACCTCCCTCAGGATCAGGAGTGAATGCTTTAGGAACCCTCCTTTGCAGCGACctgcaaaagatagagggcacggttactgtgagaacccagagtagcagccaaaggggctcaaccttcatggagttttgggaaaggttagtaaaaggtggtgtcccagcgtcagaacagatgggcagccagcgagggcactgcttcatatctatgatgggaatgcaagaattgaggagcagg
s panTro5.chr6             30107343 258 + 175400573 ACCTGAGACCTGGAGTGAGTGCACCCACCTCCCTCAGGATCAGGAGTGAATGCTTTAGGAACCCTCCTTTgcagtgacctgcaaaagatagagggcacggttactgtgagaacccagagtagcagccaaaggggctcaaccttcatggagttttgggaaaggttagtaaaaggtggtgtcccagcatcagaacagatgggcagccagcgagggcactgcttcatatctatgatgggaatgcaagaattgaggagcagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30338014 258 + 173848474 ACCTGAGACCTGGAGTGAGTGCACCCACCTCCCTCAGGATCAGGAGTGAATGCTTTAGGAACCCTCCTTTGCAGTGACCTGCAAAAGATAGAGGGCACGGTTACTGTGAGAACCCAGAGTAGCAGCCAAAGGGGCTCAACCTTCATGGAGTTTTGGGAAAGGTTAGTAAAAGGTGGTGTCCCAGCATCAGAACAGATGGGCAGCCAGCGAGGGCACTGCTTCATATCTATGATGGGAATGCAAGAATTGAGGAGCAgg
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74727197 258 + 122973662 ACCTGAGTCCTGGAGTGAGTGCACCCACCTCCTTCAGGGTCAGGAGTGAATGCTTTAGGAACCCTCCTTTTCAGTGACCTGCAAAAGATAGAGGGCACATTTACTGTGATAACCCAGAGTATCAGCCAAGGGAGCTTGACCTTCAAGGAGTTGTGGGGAAGTTTATTAAAGGGTCGTGTCCCAGGGTCAGAAAAGATGGGCAGACAGCAAGGGCACTGCTTGATATCTGTGATAAGCATGTAAGAATTGAGGAGcaag
i nomLeu3.chr1a            N 0 I 4137
s rheMac8.chr4             30489350 258 + 172585720 ACCTGAGTCCTGGAATGAGTGCACCCACCTCCCTCAGGATCAGGAGTGAATGCTTTAGGAACACTCCTTTgcagtgacctgcaaaagatagagggcacagttactgtgagaacccagagtagcagccaagggggctctgccctcaaggagttgtggggaaggttaataaaaggtggtgtcccagggtcagaccagatgggcagccagcgagggcactgcttcatatctatgatgagagtgcaagaattgaggagcagg
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1      95548 258 +   1495729 ACCTGAGACCTGGAGTGGGTGCACCCGCCTCCCTCAGGATCAGGAGTGAATGCTTTAGGAACCCTCCTTTGCAGTGACCTGCAAAAGATAGAGGTCACGGTTACTGTGAGAACCCAGAGTAGCAGCCAAGAGGGATCGGCCCTCAAGGAGTTGTGGGGAAGGTTAATAAAAGGTGGTGTCCCAGGGTCAGAACAGATGGGCAGCCAGCGAGGGCACTGCTTCATATCTATGATGAGAATGCAAGAATAGAGGAGCAgg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     150275 257 -    863181 ACCTGAGACCTGGAGTGGGTGCACCCGCCTCCCTCAGGATCAGGAGTGAATGCTTTAGGAACACTCCTTTGCAGTGACCTGCAAAAGATAGAGGGCACGGTGACTGTGAGAACCCAGAGTAGCAGCC-AGGGGGCTCGGCCCTCAAGGAGTTGTGGGGAAGGTTAATAAAAGGTGGTGTCCCAGGGTCAGAACAAATGGGCGGCCAGCGAGGGCACTGCTTCATATCTATGATGAGAATGAAAGAATTGAGGAGCAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29308418 257 -  71996105 ACCTGAGACCTGGAGTAGGTGCACCCACCTCCCTCAGGGTCAGGAGTGAATGCTTTAGGAACCCTCCTTTGCAGTGACCTGCAAAATATAGAGGGCACAGTTACTGTGAGAACCcagagtagcagccaagggggctcggccctcaaggagttgtggggaagg-taataaaaggtggtgtcccagggtcagaacagatgggcagccagcgagggcactgcttcatatctatgatgagaatgcaagaattgaggagcagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     150172 257 +    273075 ACCTGAGACCTGGAGTGGGTGCACCCGCCTCCCTCAGGATCAGGAGTGAATGCTTTAGGAACACTCCTTTGCAGTGACCTGCAAAACATAGAGGGCACGGTGACTGTGAGAACCCAGAGTAGCAGCC-AGGGGGCTCGGCCCTCAAGGAGTTGTGGGGAAGGTTAATAAAAGGTGGTGTCCCAGGGTCAGAACAAATGGGCGGCCAGCGAGGGCACTGCTTCATATCTATGATGAGAATGCAAGAATTGAGGAGCAGG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      46608 258 -   1829203 ACCTGAATCCTGGAATGAGTGCACCCACCTCCCTCAGGATCAGGAGTGAATGCTTTAGGAACACTCCTTTGCAGTGACCTGCAAAAGATAGAGGGCACAGTTACTGTGAGAACCCAGAGTAGCAGCCGAGGGGGCTCGGCCctcaaggagttgtgggtaaggttaataaaaggtggtgtcccagggtcagaccagatgggcagccagggagggcactgcttcatatctatgatgagaattcaagaattgaggagcagg
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17156057 41840 -  18854210 I
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e macFas5.chr4             29884116 3584 - 170955103 I

a score=3482038.000000
s hg38.chr6_GL000254v2_alt  1149145 1231 +   4827813 agactgagggtgtttgatcaaatacaaagtcatgatcccagtctcaattcctagacttcagccaagcttcagattcagaatctacagtggggcttaaggaggccaggaaataaacctggacacattatggcccactgtgggaccactgggttcataaacccagtcctggttatctccccatt--ctccacatgcataattggccttgatgcactggcaaagggagtcacccccacactacatccctagtctgaagagtaagggctatcattgtgctgaagcccaaagggaatcatctaaaacttccctcatcccagccaagccagaagcaatattgcgcccca-ggtgggacttcaggagggtactgcaggtattgtaggggtggcactgccattagagagctgaaggat-gg-----gg--gg----tggtgttgggattgcctattatctccatataattcagcagtctgtccctgaagaagcctgata------aagaatgaatggaattactccagacttgaccaagtaggagtcctgattgcagctgccatgctggctggatatcactgcttggggagattaataaggcctcaggcacatggcaaacagccatgcatttggtgagtgcattctttcccattccatttagaaaatggatatggaatgattcacattcacatgggatttataatacatttattgatagcttgcctcagggctactttaactcctcaac---cttctataaatatcaccttaagagatctggacaaatcagacatctcacagaatactaaatctcttcatttcattggcaatatcacatagattgggatggatgagtaa---gaggaggaaagtacgctgaattctttggcaaaacgtgtgcactacagaaggtgaagattaaccttacagagcttcaagagtggccactgcagtgaagtgttatgggtccagtggttaggggcatgcagggctgtcccctccaaagtaaaagacaaacttgcatcttgcatcctcaacagaaggaaggaagcacactatttggtgagcttctctgggtcctggcaacaccacattccacatctaagtatattg-tttggcccactgtctgggtataatataggaagaggtcagctttgagtgcggactagacaggaaaggacactgcagcagatccaggcggtggtgtaccaggtcatcaactctcagtcccctggtgctgggggtgacagcgtggggaaagatgc
s panTro5.chr6             30107601 1233 + 175400573 agactgagggtgtttgactaaatacgaagtcatgatcccagtctcaattcctagacttcagccaagcttcagattcagaatccaCagtggggcttaaggaggccaggaaataaacctggacacattatggcccactgtgggaccactgggttcataaaccgagtcctggttatctccccatt--ctccacatgcataattggccttgatgcactggcaaagagggtcacccccacactacatccctagtctggagagtaagggctatcattgtgctgaagctcaaagggaatcatctaaaacttccctcatcccagccaagccagaagcaatattgtgcccca-ggtgggacttcaggagggtactgcaggtattgtaggggtggcactgccattagagagctgaaggat-gg-----gg--gg----tgatgttgggattgcctattatctccatataattcagcagtctgtccctgaagaagcctgata------aagaatgaatggaattactccagacttgaccaagtaggagtcctgattgcagctgccatgctggctggatatcactgcttggggagatgaataaggcctcaggcacatggcaaacagccatgcatttggtgagtgcattctttcccattccatttagaaaatggatatggaatga-tcacattcatatgggatttataatacatttattgatagcttgcctcagggctactttaactcctcaac---cttctataaatatcaccttaagagatctggacaaatcagacatctcacagaatactaaatctcttcatttcattggcaatatcacatagattgggatggatgagcaagaggaggaggaaagtatgctgaattctttggcaaaacgtgtgcactacagaaggtgaagattaaccttacagagcttcaagagtggccactgcagtgaagtgttatgggtccagtggttaggggcatgcagggctgtcccctccaaagtaaaagacaaacttgcatcttgcatcctcaacagaaggaaggaagcacactacctggtgagcttctctgggtcctggcaacaccacattccacatctaagtatattg-tttggcccactgtctgggtataatataggaagaggtcagctttgagtgcagactagacaggaaaggacactgcagcagacccaggcggtggtgtaccaggtcatcaaccctcagtcccctggtgctgggggtgacagtgtggggaaagatgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30338272 1233 + 173848474 agactgagggtgtttgactaaatacgaagtcatgatcccagtctcaattcctagacttcagccaagcttcagattcagaatccaCAGTGGGGCTTAAGGAGGCCAGGAAATAAACCTGGACACATTATGGCCCACTGTGGGACCACTGGGTTCATAAACCGAGTCCtggttatctccccatt--ctccacatgcataattggccttgatgcactggcaaagagggtcacccccacactacatccctagtctggagagtaagggctatcattgtgctgaagctcaaagggaatcatctaaaacttccctcatcccagccaagccagaagcaatattgtgcccca-ggtgggacttcaggagggtgctgcaggtattgtaggggtggcactgccattagagagctgaaggat-gg-----gg--gg----tggtgttgggattgcctattatctccatataattcagcagtctgtccctgaagaagcctgata------aagaatgaatggaattactccagacttgaccaagtaggagtcctgattgcagctgccatgctggctggatatcactgcttggggagatgaataaggcctcaggcacatggcaaacagccatgcatttggtgagtgcattctttcccattccatttagaaaatggatatggaatga-tcacattcacatgggatttataatacatttattgatagcttgcctcagggctactttaactcctcaac---cttctataaatatcaccttaagagatctggacaaatcagacatctcacagaatactaaatctcttcatttcattggcaatatcacatagattgggatggatgagcaagaggaggaggaaagcatgctgaattctttggcaaaacgtgtgcactacagaaggtgaagattaaccttacagagcttcaagagtggccactgcagtgaagtgttatgggtccagtggttaggggcatgcagggctgtcccctccaaagtaaaagacaaacttgcatcttgcatcctcaacagaaggaaggaagcacactacctggtgagcttctctgggtcctggcaacaccacattccacatctaagtatattg-tttggcccactctctgggtataatataggaagaggtcagctttgagtgcggactagacaggaaaggacactgcagcagacccaggcggtggtgtaccaggtcatcaaccctcagtcccctggtgctgggggtgacagtgtggggaaagatgc
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30489608 1234 + 172585720 aggccgagggtgtttgaccaaatacaaagtcatgatcccagtctcaattcctagacttcagccaagcttcagattcagaatccaCagtggggcttaaggaggccaggaaataaacctggacacactatggcccacagtgggaccactgggtccataaacccagtcctggttttctccccattccccccacatgcataattggccttcatgcactggcaacttgagtcacccccacactgcgtacctagtctggagagtaagggctctcattgtgcgaaagcccaaagggaatcctctaaaacttccctcatcccagccaagccagaagcaatattgtacccca-ggtggaacttgtggagggtactgcaggtagtgtaggggtagcactgccattagagagctgaaggatgggggggcgg--gg----gggcgttgggattgcctattatctccatataattcagcaatctgtccctgaagaagcctgata------aagcatgaatggaatttctccagatttgaccaagtaggagtcctgattgcagctgccatgctggctggatatcactgcttggggagattaataaggcctcaggtacatggcaagcagctgtggatttggtgagtgtattccttcccattccatttagaaaatggatatggaatgattcacattcacatgggatttttaatacatgtattgatagcttgcctcagggctaccttaactcctcaac---cttctataaatatcaccttaagagtcctggacaaatcagacatatcacagaatactaaatctgctcatttcattggcaatatcacatagatcaggatggaagcgaaa---gcggaggaaagtacgctgaattccttggcaaaacatgtgccctatggaaagtgaagattaaccttacagagcttcaagagtggacactgcagtgaagttttatgagtccagtggttaggggcatgcagggctctcccctccaaagtaaaagtcaaacttgcatcttgtatcctcaccagaaggaaggacgcacactaccc----agcttctctgggttctgttaacaccacattccacatctaagtatattgctttggcccacactctggg--tgatacaggaggcggccagctatgagtggggcctggacaggaaaggacactgccgcagacccaggctgtggtgcagtcagtcaccatccctcagacccctggccctggaagtggcggtgtggggaaagatgc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1      95806 1232 +   1495729 aggccgagggtgtttgaccaaatacaaagtcatgatcccagtctcaattcctagacttcagccaagcttcagattcagaatccacagtggggcttaaggaggccaggaaataaacctggacacactatggcccacagtgggaccactgggtccataaacccagtcctggttatctccccatt--ccccatatgcataattggctttcatacactggcaactttggtcaccctcacactgtgtccctagtctggagagtaagggttctcattgtgctgaagcccaaagagaatcctctaaaacttccctcatcccagcctagccagaagcaatattgtgcaccagggtgggacttgtggtgggtactgcaggtattgtaggggtagcactgccattagagagctgaaggat-ggtgtgcgg--gg----gggggttgggattgcctattatctccatataattcagcaatctgtccctgaagaaacctgata------aagcatgaatggaatttctccagacttgaccaagtaggagtcctgattgcagctgccatgctggctggatatcactgcttggggagattaataaggcctcaggcacatggcaagcagctgtggatttggtgagtacattccttcccattccatgtagaaaattgatatggaatgattcacattcacatgggatttataatacattgattgatagcttgcctcagggttacctcaactcctcaac---cttctgtaaatatcaccttaagagacctggacaaatcagacatatcacagaatactaaatctgctcatttcattggcaatatcacatagatcaggatggaagagcaa---gaggaggaaagtacgctgaattccttggcaaaacatgtgcactatggaaggtgaagattaaccttacagagcttcaagagtggacactgcagtgaagtttcataagtccagtggttaggggcatgcaaggttctcccctccaaagtaaaagtcaaacttgcatcttgtatcctcaccagaaggaaggacgcacactaccc----agcttctctgggttctgtcaacaccacattccacatctaagtatatttctttggcccacactctggg--tgatataggaggaggccagctttgagtagggcctggacaggaaagaacactgcagcagacccaggctgtggtacagtcagtcaccatccctcagactcctggtgctggaggtggcggtgtggggaaagatgc
i macNem1.NW_012012100v1   C 0 N 0
s cerAty1.NW_012002535v1     150532 1213 -    863181 AGGCCGAGGGTGTTTGACCaaatacaaagtcgtgatcccagtctcaattcccagacttcagccaagcttcagattcagaatccacagcggggcttaaggaggccaggaaataaacctggacacactatggcccacagtgggacccctgggtccataaacccagtcctggttatctccccatt--ccccacatgcataattggccttcatgcactggcaactttggtcacccccacactgtgtccctagtctggagagtaagggctcttattgtgctgaagcccaaagggaatcctctaaaacttccctcatcccagcctagccagaagcaatattgtgcccca-ggtgggacttctggagagtac---------agtaggggtagcactgccattagagatctgaaggat--------gg--gg----tgatgttggggttgcctgttatctccgtataagtcagccatctgtccctgaagaagcctgatatggatcaagaatgaatggaattactccagacttgaccaagt---agtcctgattgcagctgtcatggtggctggatatcagtacttggggagattggtaatctctcaggcacatggcaggcagccatgcatttggtgagtgcattcctt-ccattccatttagaaaatgaacatggaatgattcacattcacatgggatttttaatacatttattgatagcttccctcagggcttccttaactcctcaac---cttctgtaaatatcgccttcagagatctggacaaatcagatatctcacagaatactaaatctgttcatttcattggcaatatcacataaatcaagatggatgagcaa---gaagaggaaagtatgctgaattccttggcaaaacatgtgcactacagaaggtgaagataaaccttagagagcttcaagagtggccactacagtgaagatttatgggtccagtggttacaggcatgcagggctctctcctccaaagtaaaagacacacttgcatcttgcatcctcaccacaaggaaggatgcacaacacctggtgggcctctctgggtcctggcaacaccgcattccacatctgagtatattgctttggcccactctccggg--taatatagga---gaccagctttgagtggggcctggacaagaaaggatactgcagcagacccaggctgtggtgctgtcagtcaccatccctcagatccttggtgctgggggtgac-----agGGAAAgatgc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29308675 1205 -  71996105 aggctgagggtgtttgaccaaatacaaagtcatgatcccagtctcaattcctagacttcagccaagcttcagattcagaatccacagtggggcttaaggaggccaggaaataaacctggacacactatggcccacagtgggaccactgggtccataaacccagtcctggttatctccccatt--ccccatatgcataattggccttgatgcactggcaacttgagtcactcccacactgcgtccctagtctggagagtaaggggtctcattgtgctgaagcccaaagggaatcctctaaaacttccctcatcccagccaagccagaagcaatattgtgcccca-ggtgggacttgtggtgggtactgcaggtattgtaggggtagcactgctgttagagagctgaaggat--------gg--gggtgagggtgttgggattgcctattatctccatataattcagcaatctgtccctgaagaagcctgata------aagcatgaatggaatttctccagacttgaccaagtaggagtcctaattgcagctgccatgctggctggatatcactgcttggggagattcataaggcctcaggcacatggcaagcagctgtggatttggtgagtacattccttcccattccatgtagaaaatgggtatggaatgattcacattcaaatgggatttataatacatttattgatagcttgcctcagggctaccgtaactcctcaaccttcttctgtaagtatcaccttaagagacctggacaaatcagacatatcacagaatactaaatatgctcatttcattggcaatatcacatagatcaggatggaagagcaa---gaggaggaaagtacgctgaattccttggcaaaacatgtgccctatggaaggtgaagattaaccttacagagcttcaagagtggacactgcagtgaagttttatgagtccagtggttaggggcatacagggctctccc--------------------------cttgtatcctcaccagaaggaaggacgcacactaccc----agcttctctgggttctgtcaacaccacattccacatctaagtatatttctttggcccacactctggg--tgatataggaggaagccagctttgagtggggcctggacaggaaaggacactgctgcagacccaggctgtggtgcagccagtcaccatccctcagacccctggtgctggaggtggcggtgtggggaaagatgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     150429 1213 +    273075 AGGCCGAGGGTGTTTGACCaaatacaaagtcgtgatcccagtctcaattcccagacttcagccaagcttcagattcagaatccacagcggggcttaaggaggccaggaaataaacctggacacactatggcccacagtgggacccctgggtccataaacccagtcctggttatctccccatt--ccccacatgcataattggccttcatgcactggcaactttggtcacccccacactgtctccctagtctggagagtaagggctcttattgtgctgaagcccaaagggaatcctctaaaacttccctcatcccagcctagccagaagcaatattgtgcccca-ggtgggacttctggagagtac---------agtaggggtagcactgccattagagatctgaaggat--------gg--gg----tgatgttggggttgcctattatctccatataagtcagccatctgtccctgaagaagcctgatatggatcaagaatgaatggaattactccagacttgaccaagt---agtcctgattgcagctgtcatggtggctggatatcagtacttggggagattggtaatctctcaggcacatggcaggcagccatgcatttggtgagtgcattcctt-ccattccatttagaaaatgaacatggaatgattcacattcacatgggatttttaatacatttattgatagcttccctcagggcttccttaactcctcaac---cttctgtaaatatcgccttcagagatctggacaaatcagatatctcacagaatactaaatctgttcatttcattggcaatatcacataaatcaagatggatgagcaa---gaagaggaaagtacgctgaattccttggcaaaacatgtgcactacagaaggtgaagataaaccttagagagcttcaagagtggccactacagtgaagatttatgggtccagtggttacaggcatgcagggctctctcctccaaagtaaaagacacacttgcatcttgcatcctcaccacaaggaaggatgcacaacacctggtgggcctctctgggtcctggcaacaccgcattccacatctgagtatattgctttggcccactctccggg--taatataggag---accagctttgagtggggcctggacaagaaaggatactgcagcagacccaggctgtggtgctgtcagtcaccatccctcagatccttggtgctgggggtg-----agagggaaagatgc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      46866 1228 -   1829203 aggccgagggtgtttgaccaaatacaaa-tcatgatcccagtctcaattcctagacttcagccaagcttcagattcagaatccaCagtggggcttaaggaggccaggaaataaacctggacacactatggcccacagtgggaccactgggtccataaacccagtcctggttatctccccatt--ctccacatgcataattggctttcatgcactggcaactttggtcacccctacactgcatccctagtctggaaagcaaggactgtcattgtactgaagcccaaagggaatcctctaaaacttccctcatcccagctaagccagaagcaatattgtgccccagggtgggacttgtggagggtactgcaggtattgtaggggtagcactgccattagagagctcaaggat--------gggcgg----tggtgttggggttgcctgttatctccatataattcagcaatctgtccctgaagaagcctcata------gagagtgaatggaatttctccagacttgaccaagtaggagtcctgattgcagctgccatgctggctggatatcactgcttagggagattaataatgcctcagtcacatggcaagcagctgtggatttggtgagtgcattccctcccattttatttagaaaatctatatggaatgattcacattcacatgggatttataatgcatttattgataccttgcttcagggctaccttaactattcaac---cttctataaatatcaccttaagagacctggacaaatcaaatatctcacagaacactaaatctgctcatttcattggcaatattacataaatagggatggatgagcaa---gaggaggaaagcacactgaattccttggcaaagca--tgcactacagaaggtgaagataaaccttacagaacttcaagagtggccactgctgtgaaggtttatgggtccagtggttaggggcatgcagggctctcccctccaaagtaaaagacacacttgcatattacatcctcaccagaaggaaggacgaacactgcctggtgagcctcgctgggttctggcaatgccacattccacatctaagtacattgctttggcccacactctggg--tgatataggaggaggccagttttgagtggggcctggacaggaaaggacactgcagccgacccaggctgtggtgcagtcggtcaccatccctcagacccctggtgctggaggtggcggtgtggggaaagatgc
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17156057 41840 -  18854210 I
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74727455 4137 + 122973662 I

a score=45810.000000
s hg38.chr6_GL000254v2_alt  1150376 21 +   4827813 tagatggagctGAACCAAGCA
s panTro5.chr6             30108834 21 + 175400573 tagatggagctGAACCAAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30339505 21 + 173848474 tagatggagctGAACCAAGCA
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30490842 21 + 172585720 aggatggagctgaaccaagca
i rheMac8.chr4             C 0 I 3325
s cerAty1.NW_012002535v1     151745 21 -    863181 aggatggagctcatccaagca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29309880 21 -  71996105 aggatggagctgaaccaagca
i chlSab2.chr17            C 0 I 3377
s manLeu1.NW_012101121v1     151642 21 +    273075 aggatggagctcatccaagcA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      48094 21 -   1829203 aggatggagctgaaccaagca
i colAng1.NW_012115577v1   C 0 I 2257
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17156057 41840 -  18854210 I
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74727455 4137 + 122973662 I

a score=42129.000000
s hg38.chr6_GL000254v2_alt  1150397 48 +   4827813 GCTGAGATCAagtgagctgagatcccgcccctacactccagcctgagc
s panTro5.chr6             30108855 48 + 175400573 GCTGAGATCAagtgagctgagatcccgcccctacactccagcctgagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30339526 48 + 173848474 GCTGAGATCAagtgagctgagatcccgcccctacactccagcctgagc
i panPan2.chr6             C 0 C 0
s cerAty1.NW_012002535v1     151766 48 -    863181 gctgagatcaagtgagctgagatcatgcccctacactcgagcctgggc
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     151663 48 +    273075 GCTGAGATCAagtgagctgagatcatgcccctacactcgagcctgggc
i manLeu1.NW_012101121v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17156057 41840 -  18854210 I
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e colAng1.NW_012115577v1      48115 2257 -   1829203 I
e chlSab2.chr17            29309901 3377 -  71996105 I
e macFas5.chr4             29884116 3584 - 170955103 I
e rheMac8.chr4             30490863 3325 + 172585720 I
e nomLeu3.chr1a            74727455 4137 + 122973662 I

a score=22311.000000
s hg38.chr6_GL000254v2_alt  1150445 35 +   4827813 aacaagagtgaaactccatctc-----aaaaag---aa-------aaaaa
s panTro5.chr6             30108903 38 + 175400573 aacaagagtgaaactccatctc-----aaaaagaaaaa-------aaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30339574 38 + 173848474 aacaagagtgaaactccatctc-----aaaaagaaaaa-------aaaaa
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74731592 45 + 122973662 aacaaaattgtgatataatcac-----gaaaagtaaaatttcagcagtaa
i nomLeu3.chr1a            I 4137 C 0
s cerAty1.NW_012002535v1     151814 34 -    863181 aacaagagcaaaacttcatctc---------aagaaaa-------aagac
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     151711 43 +    273075 aacaagagcaaaacttcatctcaaaaaaaaaaaaaaaa-------aagac
i manLeu1.NW_012101121v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17156057 41840 -  18854210 I
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e colAng1.NW_012115577v1      48115 2257 -   1829203 I
e chlSab2.chr17            29309901 3377 -  71996105 I
e macFas5.chr4             29884116 3584 - 170955103 I
e rheMac8.chr4             30490863 3325 + 172585720 I

a score=63769.000000
s hg38.chr6_GL000254v2_alt  1150480 62 +   4827813 aaTTAAAAGGATAAGCACCCTCCCACATCAGAGA----TAACTCCCCAACACATAATA---------------TACATGCG
s panTro5.chr6             30108941 62 + 175400573 aaTTAAAAGGATAAGCACCCTCCCACATCAGAGA----TAACCCTCCAACACATAATG---------------TACATGCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30339612 61 + 173848474 aaTT-AAAGGATAAGCACCCTCCCACATCAGAGA----TAACTCTCCAACACATAATG---------------TACATGCG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74731637 76 + 122973662 aaat-gaatgaacagcaccctcccacatcagaga----taactctcctacacgtaacgcgcatcccaggagaatacatata
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     151848 77 -    863181 aaCTAAATGGAAAAGCCGCCTGCTGCATCAGAGA----TAACACTCCTACACATAATGTGCAtcacaaaagaatacataga
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     151754 77 +    273075 aaCTAAATGGAAAAGCCGCCTGCTGCATCAGAGA----TAACACTCCTACACATAATGTGCAtcacaaaagaatacataga
i manLeu1.NW_012101121v1   C 0 C 0
s otoGar3.GL873550         17197897 81 -  18854210 agtaaaaatgaatggtaggctcccacatcaggaataactaactttcctacccatagtgtgtgccacaaaagaaaacatgga
i otoGar3.GL873550         I 41840 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e colAng1.NW_012115577v1      48115 2257 -   1829203 I
e chlSab2.chr17            29309901 3377 -  71996105 I
e macFas5.chr4             29884116 3584 - 170955103 I
e rheMac8.chr4             30490863 3325 + 172585720 I

a score=554548.000000
s hg38.chr6_GL000254v2_alt  1150542 223 +   4827813 GTGTGAGTTCTCTGTATGGGGAAGTT----AAAAAAATACAGGTCAAACTGTGATTTG------GGTA-----------TTATTGTAAAAATCTTCAGTGACAATGCCAAGGAATAGCAAATACAAGACTCAAGACATAGGTTCCTTTTAGGGGATAGGATTGGACAACAGCCTAGGGTGGCTTCATAGGTTCTGTTTCTTATGCCAGGAGGGGATATCCAGGTAGTTAGTTACTTGATCATAA
s panTro5.chr6             30109003 234 + 175400573 GTGTGAGTTCTCTGTATGGGGAAGTT--AAAAAAAAAAACAGGTCAAACTGTGATTTG------GGTA--TATATATACTTATTGTAAAAATCTTCAGTGACAATGCCAAGGAATCGCAAATACAAGACTCAAGACATAGGTTCCTTTTAGGGGATAGGATTGGACAACAGCCTAGGGTGGCTTCATAGGTTCTGTTTCTTATGCCAGGAGGGGATATCCAGGTAGTTAGTTACTTGATCATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30339673 236 + 173848474 GTGTGAGTTCTCTGTATGGGGAAGTT--AAAAAAAAACACAGGTCAAACTGTGATTTG------GGTATATATATATACTTATTGTAAAAATCTTCAGTGACAATGCCAAGGAATCGCAAATACAAGACTCAAGACATAGGTTCCTTTTAGGGGATAGGATTGGACAACAGCCTAGGGTGGCTTCATAGGTTCTGTTTCTTATGCCAGGAGGGGATATCCAGGTAGTTAGTTACTTGATCATAA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74731713 229 + 122973662 gtgtgagttctctgcacagggaagtt-----aaaaaaaacaggtcagactgtgattta------ggta----tatatatttattgtaaaaatctttagagacattgcaaaggaatagtaaatacaagactcaagatagaggttccttttggaggATAGGATTGGGCAACAGTCTAGGGTGGCTTCATAGCTTCTGATTTTTATGCCAGGAGAGGATGTCCAGGTAGTTAGTTACTTGATCATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30494188 234 + 172585720 gtgtgagttctctgtatggggaagtt--aaaaaaaaaaacagatcaaactgtgatttg------ggta--tatatatacttattgtaaaaatctttagtgacagtgcaaaggaatagtaaatacaagactcaagacagaggttccttttgggggATAGGATTGGACAACAATCTAGGGAGGCTTCATTGGTTCTATCTCTTATGCCAGGAGGGGATGCCCAGGTGGTTAGTTACTTGATCGTAA
i rheMac8.chr4             I 3325 C 0
s cerAty1.NW_012002535v1     151925 230 -    863181 gtgtgagttctctgtaggtagaagtt------aaaaaaacgggccaaactgtgatttg------ggta--tatatatgcttattgtaaaaatctttagtgacaatgcaaaggaatagtaaatgcaagactcaagatataggttcctttttggggATAGGATTGGACAACCATCTAGGATGGCTTCATAGGTTCTGTTTCTTATGCCAGGAGGGGGTGCCCAGGTACTTAGTTACTTGATCATAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29313278 236 -  71996105 gtgtgagttctctgtatggggaagttaaaaaaaaaaaaacaggtcaaactgtgatttg------ggta--tatatatacttattgtaaaaatctttagtgacagtgcaaaggaatagtaaatacaagactaaagacagaggttccttttgggggatgggaTTGGACAACAGTCTAGGGTGGCTTCATTGGTTCTGTCTCTTATGCCAGGAGGGGATGCCCAGGTGGTTAGTTACTTGATCGTAA
i chlSab2.chr17            I 3377 C 0
s manLeu1.NW_012101121v1     151831 230 +    273075 gtgtgagttctctgtaggtagaagtt------aaaaaaacgggccaaactgtgatttg------ggta--tatatatgcttattgtaaaaatctttagtgacaatgcaaaggaatagtaaatgcaagactcaagatataggttcctttttggggATAGGATTGGACAACCATCTAGGATGGCTTCATAGGTTCTGTTTCTTATGCCAGGAGGGGGTGCCCAGGTACTTAGTTACTTGATCATAA
i manLeu1.NW_012101121v1   C 0 C 0
s otoGar3.GL873550         17197978 193 -  18854210 gggtgatttcagtgtacaggaaattt--------aaaaacaggagaaactaatatttggtctgaggga--tatagatatttactataaaaatctttagaga-aatg------------------aAGACTC------------------TGCAGTTGGGACTGGGCAGCAGCCCATGGTGGCTTCCTAGGTTCTGCTTCTTATGCCAGTAGCAGGTGCCCAAGTGC----TCACTTGATCATAA
i otoGar3.GL873550         C 0 I 367
e micMur3.chr6               240797 2210 + 123392446 T
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e colAng1.NW_012115577v1      48115 2257 -   1829203 I
e macFas5.chr4             29884116 3584 - 170955103 I

a score=730130.000000
s hg38.chr6_GL000254v2_alt  1150765 379 +   4827813 AAC----tttatttatttatttatttatttatttatatatttT-------gagtctcgctcttgttgcccaggctggagtacagtggcatgatctcagttcactgcaacctccgcctcccaggttcaagggattctcctgcctcagcctcctgagca----gctgggattgcaggcaaatgccaccactcccagctaatttttgtatttttagtagagac-gggcttcaccatgttgaccaggttggtctggaactcctgacctcaggtgatccacccacttcagcctaccaaattgctgagattacaggcatgagccaccactcctggccCAC--------AAATCTTTAAAGTGGTATTTTTCAAAATGCACCTTGTGTGCCATTCCTGATTGATTATTTG
s panTro5.chr6             30109237 366 + 175400573 AAC----------------tttatttatttatttatatatttT-------gagtctcgctcttgttgcccaggctggagtacagtggcgtgatctcagttcactgcaacctccgcctcccaggttcaagggattctcctgcctcagcctcctgagca----gctgggattgcaggcaaatgccaccactcccagctaatttttgtatttttagtagagac-gggcttcaccatgttgaccaggttggtctggaactcctgacctcaggtgatccacccacttcagcctaccaaattgctgagattacaggcatgagccaccactcctggccCAC--------AAATCTTT-AAGTGGTATTTTTCAAAATGCACCTTGTGTGCCATTCCTGATTGATTATTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30339909 366 + 173848474 AAC----------------tttatttatttatttatatatttt-------gagtctcgctcttgttgcccaggctggagtacagtggcgtgatctcagttcactgcaacctccgcctcccaggttcaagggattttcctgcctcagcctcctgagca----gctgggattgcaggcaaatgccaccactcccagctaatttttgtatttttagtagagac-gggcttcaccatgttgaccaggttggtctggaactcctgacctcaggtgatccacccacttcagcctaccaaattgctgagattacaggcatgagccaccactcctggccCAC--------AAATCTTT-AAGTGGTATTTTTCAAAATGCACCTTGTGTGCCATTCCTGATTGATTATTTG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74731942 386 + 122973662 ATCtttatttatttatttatttatttattcattcatttatttttgagatggagtctcactcttgtcacccaggcaggagtgcagtggtgtgatctcggctcactgcaacctccacctcccatgttcaagagattctcctacctcagcct-ctgagca----gctaggattacaggcacctgccatgatgccaggctaatttttgtatttttcgtacagactgtgcttcaccatgttggccaggctggtctccaactcctgatctcaggtgatccacccacttcggcctcccaaagtgctgggattagagacatgagccaccgctcccggcTCAC--------AAATATTTATAGTGGCAATTTTCAAAACGCACCTTGTGTGCCATTCC----TGATTATTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30494422 356 + 172585720 AAC------------------------TTTATTTATTTGTTT---------agtgttgctcttgtcgcctaggctggagtgcagtggtgtgatttcggctcactgcaacctccgcctcctgggttcaaaggattctcctgccccagcctcctgagta----gccaggattacaggcacgcaccacaactcctggctaatttttgtatttttagtagagac-gggtttcaccatgttgaccaggctggtctcagactcctgagttcaggtgatcta-ccacttcggcctaccaaattgctggaattacaggcatgagccaccgctcctggccCAC--------AAATCTTTAAAGTGGCATTTTTCAAAATGCACCTTGTGTGCCTTTCCTGATTGATTATTTG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     152155 376 -    863181 AAC------------------tacttatttatttatttatttT-------gaatctcgctcttgttgcctaggctggagtgcagtggtgcaatctcagctcactgcaacctctgcctcccgggttaaagggattttcctgcctcagcatcccgagtagctggctgggattacaggcacgcgccaccactcctggctaatttttgcattttcagtagagac-gggtttcaccatgttgaccaggctgctctcaaactcctgacctcagatgatccacccacttcagcctatgaaattgctgagattacaggcatgagccactgctcctggccCACCaaaaaaaaaaaaaaaaaaGTGACATTTTTCAAAATGCACC-TGTGTGCCTTTCCTGATTGATTATGTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29313514 357 -  71996105 AAC------------------------TTTATTTATTTGTTT---------agtcttgctcttgttgcctaggctggagtgccgtggtgtgatctcggctcactgcaacctccgcctcctgggttcaaaggattctcctgccccagcctcctgagta----gccgggattacaggcacgcaccacaactcctggctaatttttatatttttagtagagac-gggtttcaccatgctgaccaggctggtctcgaactcctgagctcaggtgatccacccacttcggcctaccaaattgctggaattacaggcatgagccaccgctcctggccCAC--------AAATCTTTAAAGTGGCATTTTTCAAAATGCACCTTGTGTGCCTTTCCTGATTGTTTATTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     152061 374 +    273075 AAC------------------tacttatttatttatttatttT-------gaatctcgctcttgttgcctaggctggagtgcagtggtgcaatctcagctcactgcaacctctgcctcccgggttaaagggattttcctgcctcagcatcccgagtagctggctgggattacaggcacgcgccaccactcctggctaatttttgcattttcagtagagac-gggtttcaccatgttgaccaggctgctctcaaactcctgacctcagatgatccacccacttcagcctatgaaattgctgagattacaggcatgagccactgctcctggccCACCAAAAA--AAAAAAAAAAAGTGACATTTTTCAAAATGCACC-TGTGTGCCTTTCCTGATTGATTATGTG
i manLeu1.NW_012101121v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17198171 367 -  18854210 I
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e colAng1.NW_012115577v1      48115 2257 -   1829203 I
e macFas5.chr4             29884116 3584 - 170955103 I

a score=143048.000000
s hg38.chr6_GL000254v2_alt  1151144 72 +   4827813 gaaa------tgaaagagaaaagaaaatgcca-aagttcatcacaagcatcct-----ttgcgat-----aactactcgtagtaaaaca
s panTro5.chr6             30109603 72 + 175400573 gaaa------tgaaagagaaaagaaaatgcca-aagttcatcacaagcatcct-----ttgcgat-----aactactcatagtaaaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30340275 72 + 173848474 gaaa------tgaaagagaaaagaaaatgcca-aagttcatcacaagcatcct-----ttgcgat-----aactactcatagtaaaaca
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74732328 72 + 122973662 gaaa------tgaaagagaaaagaaaacacaa-aagttcattgcaaggatccc-----tagtgat-----aactacatgcgttaaaaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30494778 78 + 172585720 GAAATTCCTTTATATTATAAAGgaatatacca-aagttcaccacaaggatcct-----cagcgat-----aactactcatggtaaaaca
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     152531 72 -    863181 gaaa------tgaaagagaaatgaaaatacca-aagttcatcacaaggatcct-----tagcgat-----aactgCTCTTAGTAAAACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29313871 72 -  71996105 GAAA------TGAAAGATAAAGGAATATACCA-AAGTTCACCACAAGGATCCT-----CAGTGAT-----AACTACTCATGGTAAAACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     152435 72 +    273075 gaaa------tgaaagagaaatgaaaatacca-aagttcatcacaaggatcct-----tagcgat-----aactgCTCTTAGTAAAACA
i manLeu1.NW_012101121v1   C 0 C 0
s otoGar3.GL873550         17198538 83 -  18854210 aaaa------taaatgaaacaggaaaacattataaaagaataactagtatcttaccaggagtgattaaaaaataaccaaggatggaata
i otoGar3.GL873550         I 367 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e colAng1.NW_012115577v1      48115 2257 -   1829203 I
e macFas5.chr4             29884116 3584 - 170955103 I

a score=78238.000000
s hg38.chr6_GL000254v2_alt  1151216 58 +   4827813 aagccgcagctggccgggcacggtggctca--cttctgtgatcctagcac-tttgggaagt
s panTro5.chr6             30109675 45 + 175400573 aagccgcagc-------------tggctca--cttctgtgatcctagcac-tttgggaagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30340347 58 + 173848474 aagccgcagctggccgggcacggtggctca--cttctgtgatcctagcac-tttgggaagt
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30494856 59 + 172585720 aagccgcagctggctgggcacggtggctaa--agtctgtgatcccagcacttttgagaagt
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     152603 60 -    863181 AAGCCGCAGTTggctgggcatggtggctaacccatctgtgatcccagcac-tttgggaagt
i cerAty1.NW_012002535v1   C 0 I 59058
s chlSab2.chr17            29313943 58 -  71996105 AAGCCGCAGCTggctgggcacggtggctaa--agtctgtgatcccggcac-tttgagaagc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     152507 60 +    273075 AAGCCGCAGTTggctgggcatggtggctaacccatctgtgatcccagcac-tttgggaagt
i manLeu1.NW_012101121v1   C 0 I 4890
s otoGar3.GL873550         17198621 47 -  18854210 aaacaata--taaatgggctcgg---------cgtctgtggctcaagtgg-ctaaggca--
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e colAng1.NW_012115577v1      48115 2257 -   1829203 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74732400  0 + 122973662 C

a score=212433.000000
s hg38.chr6_GL000254v2_alt  1151274 237 +   4827813 cgagacctgtggatcacgagatcag-gagttcgagaccagcct-gaccaacatggtgaaacctcgtctttactaaaaatacaaaaattagctgggcgtgttggtgcgtgtctgtaatccaagctactcagaaggctgatgcaggagaatcgcttgaacctggaaggcagaagttgcagtgagctgagatcctgccatcgcactccagcctgggtgacagagccatactccatctcaaaa
s panTro5.chr6             30109720 237 + 175400573 cgaggcctgtggatcacgagatcag-gagttcaagaccagcct-gaccaacatggtgaaacctcgtctttactaaaaacacaaaaattagctgggcgtgttggtgtgtgtctgtaatccaagctactcagaaggctgatgcaggagaatcgcttgaacctggaaggcagaagttgcagtgagctgagatcctgccatcgcactccagcctgggtgacagagccatactccatctcaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30340405 237 + 173848474 caaggcctgtggatcacgagatcag-gagttcaagaccagcct-gaccaacatggtgaaacctcgtctttactaaaaacacaaaaattagctgggcgtgttggtgtgtgtctgtaatccaagctactcagaaggctgatgcaggagaatcgcttgaacctggaaggcagaagttgcagtgagctgagatcctgccatcgcactccagcctgggtgacagagccatactccatctcaaaa
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30494915 232 + 172585720 tgaagccgat--ct--cgagatcag-gagttcgagaccagcct-gaccaacatggtgaaaccccgtctctactaaaaatacaaaaattaactgggtgtgttggtgcacacctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgtaaggcggaggttgcagtgagctgacattgtgccactgcactccagcctgggcaacagagggagactccatc-aaaaa
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29314001 234 -  71996105 tgaggccgatggat--cacgaccag-gagtttgagaccagcct-gaccaacatggtgaaaccccgtctctactaaaaatacaaagattagctgggcgtgttggtgcgcgcctgtaatcccagctactcaagaggctgaggcaggagaatcgcttgaacctggaaggtggaggttgcagtgagctgagattgtgccactgcactccagcctgggcgacagagggagactccatc-aaaaa
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550         17198668 223 -  18854210 ccagccacatacac--ctaaggcagcgagttcgaatccagcccaggcctgccaaataaca----------atgacggctgcaacaaatagccgggcgttgtggcaggcacctgtggtcccagctatgtgggaggctgaggcaggagactcgcttgagcccaggagttggaggttgctgtgagctgtga---tgccacagcactctacccagggggacagc-tgaggctctgcctcaaaa
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e colAng1.NW_012115577v1      48115 2257 -   1829203 I
e manLeu1.NW_012101121v1     152567 4890 +    273075 I
e cerAty1.NW_012002535v1     152663 59058 -    863181 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74732400   0 + 122973662 C

a score=9006.000000
s hg38.chr6_GL000254v2_alt  1151511 26 +   4827813 caaacaaacaaacaaccacaaaaaac
s panTro5.chr6             30109957 26 + 175400573 cgaacaaacaaacaaccacaaaaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30340642 25 + 173848474 cgaacaaacaaacaaccac-aaaaac
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30495147 24 + 172585720 aaaaaacaaaaacaaaaacaaaac--
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29314235 24 -  71996105 caaaaacaaaaacaaaaacaaaaC--
i chlSab2.chr17            C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17198891  0 -  18854210 C
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e colAng1.NW_012115577v1      48115 2257 -   1829203 I
e manLeu1.NW_012101121v1     152567 4890 +    273075 I
e cerAty1.NW_012002535v1     152663 59058 -    863181 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74732400  0 + 122973662 C

a score=358112.000000
s hg38.chr6_GL000254v2_alt  1151537 232 +   4827813 aagccacagccaattttaaggagccatgtgagagg----accaggatgccatg-aaaaacagccttggctacaaataggtcatttgatccttggctagttggcaactctctacattttctgatacacagtgttcaatctgatAGGTAAGGCAATAGTATCTTGCAAAGAATTTgagaatttgatatgttgctcacattttaccacacatacaagtgaattaaacttttacagaatag--
s panTro5.chr6             30109983 232 + 175400573 aagccacagccaattttaaggagccatgtgagagg----accaggatgccatg-aaaaacagccttggctacaaataggtcatttgatccttggctagttggcgactctctacattttctgatacacagtgttcaatctgatAGGCAAGGCAATAGTATCTTGCAAAGAATTTgagaatttgatatgttgctcacattttaccacacatacaagtgaattaaacttttacagaatag--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30340667 232 + 173848474 aagccacagccaattttaaggagccatgtgagagg----accaggatgccatg-aaaaacagccttggctacaaataggtcatttgatccttggctagttggcgactctctacattttctgatacacagtgttcaatctgatAGGCAAGGCAATAGTATCTTGCAAAGAATTTgagaatttgatatgttgctcacattttaccacacatacaagtgaattaaacttttacagaatag--
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74732400 237 + 122973662 aagccacagcaaattgtaaagagccatgtgacagatagtaacaggatgccatgaaaaaatagccttggctagaaataggtcatttgattcttggctaattggcaactctctacattctctggtatacaatgtccaatctgatGTGCAAGGCAATTTTATCTCGCAAAGAATTTgagaatttgatatgttgctcg-attttaccacacatacaagtgaattaaacttttacagaatag-a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30495171 219 + 172585720 aagccacagccaattgtaaggaaccatgtgacagagaggaccaggatgctatg-aaaaatagccttggctagaaataggtcatttgatccttggctaattgacagctctgtacattttctgatatacaatattcaatctgatGTGCAAGGCAATTGTATCTTGCAAAGAATTTGAGAATTTGAAATGTTGCTCACAT-------------------AATTAAACTtttacagaatcgca
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     211721 236 -    863181 aagccacagccaattgtaaggagccttgtgacagagaggaccaggatgccatg-aaaaataggcttggctagaaataggtcatttgattcttggctaattggcaactctctatactctctggtatacaatgttcaatctgatGTGCAAGGCAATTGTATCTTGCAAAGAATTTgagaatttgatatgttgctcacattttaccacacacacaagtaaattaatctttcacagaatag--
i cerAty1.NW_012002535v1   I 59058 C 0
s chlSab2.chr17            29314259 219 -  71996105 AAGCCACAGCCAATTGTAAGCAGCCATGTGACAGAGAGGACCAGGATGCCATG-AAAAATAGCCTTGGCTAGAAATAGGTCATTTGATCCTTGGCTAATTGACAGCTCTCTACATTTTCTGATATACAATCTTCAATCTGATGTGCAAGGCAATTGTATCTTGCAAAGAATTTGAGAATTTGAAATGTTGCTCACAT-------------------AATTAAACTtttacagaatcgtt
i chlSab2.chr17            C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17198891   0 -  18854210 C
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e colAng1.NW_012115577v1      48115 2257 -   1829203 I
e manLeu1.NW_012101121v1     152567 4890 +    273075 I
e macFas5.chr4             29884116 3584 - 170955103 I

a score=755090.000000
s hg38.chr6_GL000254v2_alt  1151769 414 +   4827813 aaaaaaagcattgttgagcaaaataaattaaatgaaaagacataaatgaataactagtgatgaaatagcaataagaatggaaaacacgaaagagctgcttttaaagcaacattagaagcacaaaataacagtgtttttcagaatcatactggagtccaaatcacttctaccacatctaattaaaaaccacagtgaaagatgttaaactgat--cacaggatgcccactgaatagccagttactg-aaaaatcttgttcctagattgaatttaacca-tttccacctaccacatcaaacc-aaatcattgtcatgatgctaagccagttgtacagacaaagatgtgagactcacatttttctaattgcaaagcaccctgattaggcaaatatttttgtagat---gcttgagtcagaaaattg
s panTro5.chr6             30110215 414 + 175400573 aaaaaaagcattgttgagcaaaataaattaaatgaaaagacataaatgaataactagtgacgaaatagcaataagaatggaaaacacgaaagagctgcttttaaagcaacattagaagcacaaaataacagtgtttttcagaatcatactggagtccaaatcacttctaccacatctaattaaaaaccacagtgaaagatgttaaactgat--cacaggatgcccactgaatagccagttactg-aaaaatcttgttcctagattgaagttaacca-tttccacctatcacatcaaacc-aaatcattgtcatgacgctaagctagttgtacagacaaagatgtgagactcacatttttctaattccaaagcaccctgattaggcaaatatttttgtagat---gcttgagtcagaaaattg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30340899 414 + 173848474 aaaaaaagcattgttgagcaaaataaattaaatgaaaagacataaatgaataactagtgatgaaatagcaataagaatggaaaacacgaaagagctgcttttaaagcaacattagaagcacaaaataacagtgtttttcagaatcatactggagtccaaatcacttctaccacatctaattaaaaaccacagtgaaagatgttaaactgat--cacaggatgcccactgaatagccagttactg-aaaaatcttgttcctagattgaagttaacca-tttccacctatcacatcaaacc-aaatcattgtcatgacgctaagctagttgtacagacaaagatgtgagactcacatttttctaattccaaagcaccctgattaggcaaatatttttgtagat---gcttgagtcagaaaattg
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74732637 412 + 122973662 aaaaaaagcactgtcaagcaaaataaattaaataaaaagacataaaggaataactagtgatgaaatagcaataagaatgtaaaatacgaaagagctgcttttactgcaacattagaagaacaaaataactgtatttttcagaatcatactggagtccaaatcacttctacca-atctaattaaaaaacacagcaaaagatgttaaactgat--caatggatgcccactgaatacccagttattg-aaaaatcttgttcctagattggagttaacca-tttccgcctaccacatcaaacc-aactcgttgtcgtgatgctaagctagctgtacagacaaagatgtgagacacat-tttttctaactgcaaagcgccctgattaggcaaatacttttgtagaa---gcttgagtaagaaaattg
i nomLeu3.chr1a            C 0 I 5383
s rheMac8.chr4             30495390 410 + 172585720 aaaaaaagcattgttgaacaaaataaattaaatgaaaagac--aagggaataactggtaaggaaatggcaataagaa-aaaaaacacaaaagagctgcttctaaagcaccgttagaagcacaaaataactgcatttttcagaatcatactgcagtccaaatcacttctaccacatctaatttaaaaacatagtgaaagatgttaaactaat--tataggatgtccactgaatagccagttactg-gaaaatattgttcctagactggagttaacca-tttctgcctaccacatcagacc-aaatcattgtcatgatgctaagctag-tgtatagacagagatgtgagactcacatttttctaactgcaaagcaccctgattaagcaaatatttttgtagac---gcttgagtcagaaaattt
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     211957 413 -    863181 aaaaaaagcattgttgagcaaaataaattaaatgaaaagacataaagaaataactagtgatgaaatagcaataagaatggaaaacatgaaagagctgcttttaaagcaacattagaagcacaaaataactgtacttttcagaatcatactggagtccaaatcacttctaccacatctaattaaaaaacacagcgaaagatgttaaagtgat--caatggatgcccactgaatacctagttattgaaaaaatcttgtttctagattggagttagcca-tttctgcctaccacatcaaacc-gaatcgttgtcgtggtgctaagctagttgcacagagagagatgtgaga--cacattttcctaactgcaaaggaccgtgattgggcacatatttttgtagaa---gcttgagtaagacaattg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29314478 406 -  71996105 aaaaaaagcattgttgaacaaaa-----taaatgaaaagac--aaaggaataactggtaaggaaatagcaataagaatagaaaacacaaaagagctgcttctaaagcattgttagaagtacaaaataactgcatttttcagaatcatactggagtccaaatcacttctaccacatctaattaaaaaacatagtgaaagatgttaaactaat--tataggatgcccactgaataaccagttactg-aaaaatcttgttcctagactggagttaacca-tttctgcctcccacatcaaacc-aaatcattgtcatggtgctaagctag-tgtatagacagagatgtgagactcacatttttctaactgcaaagcaccctgattaagcaaatatttttgtagac---acttgagtcagaaaattt
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550         17198891 355 -  18854210 aaaaaaa---------------------------aaaagatat-------------------------------gaatggaaaacacaacaaagctgctttagaa--aaatttagaaacacatagtctgggtacttttgagagttgtg-tagtatctgaatcattctgaccacatctcacctgaaaacactgggaaagatactaaatttattatataggatgcccagtaagtagctagttttgg-aaaaaccttattcctagattgaagttaaccattttttgactactgtatcaaaccaaaattgttgtcacagtgctaaggtaggtgtgcagaatgaggtttgagactcacatttttctgac----aagcaatttaattaggtaaatatttttgaagatgaggtttgagt-aaaaagtca
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e colAng1.NW_012115577v1      48115 2257 -   1829203 I
e manLeu1.NW_012101121v1     152567 4890 +    273075 I
e macFas5.chr4             29884116 3584 - 170955103 I

a score=13846.000000
s hg38.chr6_GL000254v2_alt  1152183 17 +   4827813 tcattttgggca------------------ttctt--
s panTro5.chr6             30110629 15 + 175400573 tcattttgggca------------------ttc----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30341313 17 + 173848474 tcattttGGGCA------------------tttct--
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30495800 17 + 172585720 gcattttgggca------------------ttctt--
i rheMac8.chr4             C 0 I 3694
s cerAty1.NW_012002535v1     212370 17 -    863181 gcattttgggca------------------ttctt--
i cerAty1.NW_012002535v1   C 0 T 54825
s chlSab2.chr17            29314884 17 -  71996105 gcattttgggca------------------ttctt--
i chlSab2.chr17            C 0 I 3865
s otoGar3.GL873550         17199246 37 -  18854210 gcattcttaacAAACTAAGTTTGCAAAAATTTTTTCC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e colAng1.NW_012115577v1      48115 2257 -   1829203 I
e manLeu1.NW_012101121v1     152567 4890 +    273075 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74733049 5383 + 122973662 I

a score=11006.000000
s hg38.chr6_GL000254v2_alt  1152200 29 +   4827813 tttttttttttttttttttttttgccttc
s panTro5.chr6             30110644 29 + 175400573 tttttttttttttttttttttttgccttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30341330 29 + 173848474 ttttttttttttttttttttttGTccttc
i panPan2.chr6             C 0 C 0
s otoGar3.GL873550         17199283 29 -  18854210 TGTCCTTTTGTTCTTGTttcttctccttc
i otoGar3.GL873550         C 0 I 6902
e micMur3.chr6               240797 2210 + 123392446 T
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e colAng1.NW_012115577v1      48115 2257 -   1829203 I
e manLeu1.NW_012101121v1     152567 4890 +    273075 I
e chlSab2.chr17            29314901 3865 -  71996105 I
e cerAty1.NW_012002535v1     212387 54825 -    863181 T
e macFas5.chr4             29884116 3584 - 170955103 I
e rheMac8.chr4             30495817 3694 + 172585720 I
e nomLeu3.chr1a            74733049 5383 + 122973662 I

a score=239884.000000
s hg38.chr6_GL000254v2_alt  1152229 982 +   4827813 aagcatctgtttaacaaagcacatcttgcaccgcccttaatccatttaaccctgagtggacacagcacatgtttcagagagcagggggttgcgggtaaggttatagattaacagcatcccaaggcagaagaatttttcttagtacagaacaaaatggagtctcctatgtctgcttctttctacacagacacagcaacaatctgatttctctgtcttttccccacatttcccccctttctattcgacaaaaccgccatcgtcatcatggccccttctcaatgagctgttgggtacacctcccagacggggtggcggccgggcagaggggctcctcacttcccagacggggtggccgggcagaggcgccccccacctcctggacgaggtggctggccgggcgggggctgccccccacctccctcctggacggggcggctgccgggcagagacgctcctcacttcccagacggggtggctgctgggcggaggggctcctcacctctcagacagggcggccggggagagacgctccttacctcccagacggggtggctgctgggcggaggggctcctcacatcccagacagggc-ggcggggcagaggcgctccccacatctcagatgatgggcggccgggcagagacgctcctcacttcctagaccggatggcggccgggcagaggctgcgatcttggcactttgggaggccaaggcaggcagctgggaggcagaggttgtagcgagccgagatcacgccactgcactccagcctgggcaacattgagcactgagtgagagagactccgtctgcaatcccggcacctcaggaggccaaggctggcagatcactcccagttaggagctggagaccagcctggccaacacagtgaaaccccgtctccaccaaaaaaatacgaaaaccagtcaggcatggtggtgcgcgcctgcaatcccaggcactctgcagactCTAAATTATTCAA
s panTro5.chr6             30110673 908 + 175400573 aagcatctgtttaacaaagcacatcttgcaccacccttaatccatttaaccctgagtggacacagcacatgtctcagagagcacggggttaggggtaaggttatagatcaacagcatcccaaggcagaagaatttttcttagtacagaacaaaatggagtctcccatgtctgcttctttctacacagacacagcaacaatctgatttctctgtcttttccccacatttcccccctttctattcgacaaaaccgccatcgtcatcatggcccgttctcaatgagctgttgggtacacctcccagacggggtggcggccgggcagaggggctcctcacttcccagacggggtggccgggcagaggcgccccccacttcctggatggggcagctggccgggcggaggctgccccccacctacctcccggacaggacggctg---------------------------------------gccgggcg--ggggct----------------------------------gccccccacctcccggacggggtggctgccgggcggagacgctcctcacttcccagactgggcgggcggggcagaggcgctccccccatctcagatgatgggcggccgggcagagatgctcctcacttcctagatgggatggcggccaggcagaggctgcaatcttggcactttgggaggccaaggcaggcggctgggaggcagaggttgtagtgagccgagatcacgccactgcactccagcctgggcaacattgagcactgagtgagcgagactccatctgcaatcccagcacctcaggaggccgaggctggcagatcactcgcagttaggagctggagaccagcctggccaacacagcgaaaccccgtctccaccaaaaaaatatgaaaaccagtcaggcgtggtggcgcgtgcctgcaatcccaggcactcggcagactCTAAATTATTCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30341359 908 + 173848474 aagcatctgtttaacaaagcacatcttgcaccacccttaatccatttaaccctgagtggacacagcacatgtctcagagagcacggggttaggggtaaggttatagatcaacagcatcccaaggcagaagaatttttcttagtacagaacaaaatggagtctcccatgtctgcttctttctacacagacacagcaacaatctgatttctctgtcttttccccacatttcccccctttctattcgacaaaaccaccatcgtcatcatggcccgttctcaatgagctgttgggtacacctcccagacggggtggcggccgggcagaggggctcctcacttcccagacggggtggccgggcagaggcgccccccacttcctggatggggcagctggccgggcggaggctgccccccacctacctcccggacaggacggctg---------------------------------------gccgggcg--ggggct----------------------------------gccccccacctcccggacggggtggctgccgggcggagacgctcctcacttcccagactgggcgggcggggcagaggcgctccccccatctcagatgatgggcggccgggcagagatgctcctcacttcctagatgggatggcggccaggcagaggctgcaatcttggcactttgggaggccaaggcaggcggctgggaggcagaggttgtagtgagccgagatcacgccactgcactccagcctgggcaacattgagcactgagtgagcgagactccatctgcaatcccagcacctcaggaggccgaggctggcagatcactcgcagttaggagctggagaccagcctggccaacacaacgaaaccccgtctccaccaaaaaaatatgaaaaccagtcaggcgtggtggcgcgtgcctgcaatcccaggcactcggcagactCTAAATTATTCAA
i panPan2.chr6             C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17199312 6902 -  18854210 I
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e colAng1.NW_012115577v1      48115 2257 -   1829203 I
e manLeu1.NW_012101121v1     152567 4890 +    273075 I
e chlSab2.chr17            29314901 3865 -  71996105 I
e cerAty1.NW_012002535v1     212387 54825 -    863181 T
e macFas5.chr4             29884116 3584 - 170955103 I
e rheMac8.chr4             30495817 3694 + 172585720 I
e nomLeu3.chr1a            74733049 5383 + 122973662 I

a score=600.000000
s hg38.chr6_GL000254v2_alt  1153211 1 +   4827813 C
s panTro5.chr6             30111581 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30342267 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s colAng1.NW_012115577v1      50372 1 -   1829203 C
i colAng1.NW_012115577v1   I 2257 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17199312 6902 -  18854210 I
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e manLeu1.NW_012101121v1     152567 4890 +    273075 I
e chlSab2.chr17            29314901 3865 -  71996105 I
e cerAty1.NW_012002535v1     212387 54825 -    863181 T
e macFas5.chr4             29884116 3584 - 170955103 I
e rheMac8.chr4             30495817 3694 + 172585720 I
e nomLeu3.chr1a            74733049 5383 + 122973662 I

a score=1500.000000
s hg38.chr6_GL000254v2_alt  1153212 1 +   4827813 G
s panTro5.chr6             30111582 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30342268 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30499511 1 + 172585720 G
i rheMac8.chr4             I 3694 C 0
s chlSab2.chr17            29318766 1 -  71996105 G
i chlSab2.chr17            I 3865 C 0
s colAng1.NW_012115577v1      50373 1 -   1829203 G
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e otoGar3.GL873550         17199312 6902 -  18854210 I
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e manLeu1.NW_012101121v1     152567 4890 +    273075 I
e cerAty1.NW_012002535v1     212387 54825 -    863181 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74733049 5383 + 122973662 I

a score=18501.000000
s hg38.chr6_GL000254v2_alt  1153213 11 +   4827813 CCTCAGACACT
s panTro5.chr6             30111583 11 + 175400573 CCTCAGACGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30342269 11 + 173848474 CCTCAGACACT
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30499512 11 + 172585720 CCTCAGACACT
i rheMac8.chr4             C 0 I 2
s chlSab2.chr17            29318767 11 -  71996105 CCTCAGACACT
i chlSab2.chr17            C 0 I 2
s colAng1.NW_012115577v1      50374 11 -   1829203 CCTTAGACACT
i colAng1.NW_012115577v1   C 0 I 2
s otoGar3.GL873550         17206214 11 -  18854210 CTTCAGAGACT
i otoGar3.GL873550         I 6902 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e aotNan1.NW_018496904v1     192480 37029 -    383796 I
e manLeu1.NW_012101121v1     152567 4890 +    273075 I
e cerAty1.NW_012002535v1     212387 54825 -    863181 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74733049 5383 + 122973662 I

a score=278151.000000
s hg38.chr6_GL000254v2_alt  1153224 76 +   4827813 -AACTTTCCAAGGAATAGGAGATTATCCCAGG---TGCCTGTGGCCAGGA-GGTGTCTGGGTTCTGTGCTCCCTTCCCCAC
s panTro5.chr6             30111594 76 + 175400573 -AACTTTCCAAGGAATAGGAGATTATCCCAGG---TGCCTGTGGCCAGGA-GGTGTCTGGGTTCTGTGCTCCCTTCCCCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30342280 76 + 173848474 -AACTTTCCAAGGAATAGGAGATTATCCCAGG---TGCCTGTGGCCAGGA-GGTGTCTGGGTTCTGTGCTCCCTTCCCCAT
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30499525 73 + 172585720 -AACTTTCTAAGGAATAGGAGATTATCCCAGA---TGCCTGTGTCCAGGATGGTGTCTGGGTTCTGTGCTCCCTTC----C
i rheMac8.chr4             I 2 C 0
s cerAty1.NW_012002535v1     157562 80 -    863181 -AACTTTCCAAGGAATAGGAGATTATCCTGGACACTGCCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCCCCAC
i cerAty1.NW_012002535v1   T 54825 C 0
s chlSab2.chr17            29318780 73 -  71996105 -AACTTTCTAAGGAATAGGAGATTATCCTAGG---TTCCTGTGTCCAGGCTGGTGTCTGGGTTCTATGCTGCCTTC----C
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012101121v1     157457 80 +    273075 -AACTTTCCAAGGAATAGGAGATTATCCTGGACACTGCCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCCCCAC
i manLeu1.NW_012101121v1   I 4890 C 0
s colAng1.NW_012115577v1      50387 77 -   1829203 -AACTTTCCAAGGAATAGGAGACTATCCCAGG---TGCCTCTGTCCAGGTTGGTGTCTGGGTTCTGTGCTCCCTTCCCCAC
i colAng1.NW_012115577v1   I 2 C 0
s cebCap1.NW_016107755v1     593362 77 -   1771730 -AACTTTCCAAGGAATAGGAGATTATTCCAAG---TGCCTGTGTCCAGGCTGCTGTCTGGGTTCCGTGCTCCCTTCCCCAC
i cebCap1.NW_016107755v1   N 0 T 69678
s aotNan1.NW_018496904v1     229509 70 -    383796 -AACTTTCCAAGGAATAAGAGATTATCCCAGG---TGTCTGTGTCCAGGCTGGTGTCTGGGTTCTG-------TTCTCCAC
i aotNan1.NW_018496904v1   I 37029 C 0
s otoGar3.GL873550         17206225 66 -  18854210 GGACCTTTCAAGGAATAGGA---------------CCTCTGGGTCCAGGCTGGCATCTGGGTTTTGCACTCCCTTCCCCAC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               240797 2210 + 123392446 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74733049 5383 + 122973662 I

a score=1515630.000000
s hg38.chr6_GL000254v2_alt  1153300 391 +   4827813 CCCAGATGTCCTATCCATTCTCAGGATGGTCACATGGGTGCTGCTGGAGTGTCCCATGAGGAATGCAAAGTGCCTCA-ATTTTCTTACTCTTCCCTTCAGAATCCCAGAATACATGTGTGATCCACTACCCCATCTCGGACCATGAGGCCGCCCTGAGGTGCTGGGTCCTGGGCTTCTACCATGTGGAAATCACAGTGACCCAACTGTGGGATGGGGAGGACCAAATTTAGGACGCAGAGCTTGTGGGGACCAGACCTGCAGGGT---ATAGAACCTTCCAGAAGTGGGCAGCTGTGATGCTGTCTTCTAGAGACAAGTAGAGATACACATGCCATGTGCAGCAGGAGGC-----ACTGCCAGAGCCCCTCACACTGAGATGGGCTAAGGAGATGAATGA
s panTro5.chr6             30111670 391 + 175400573 CCCAGATGTCCTATCCATTCTCAGGATGGTCACATGGGTGCTGCTGGAGTGTCCCATGAGGAATGCAAAGTGCCTGA-ATTTTCTTACTCTTCCCCTCAGAATCCCAGAATACATGTGTGATCCACTACCCCATCTCAGACCCTGAGGCCACCCTGAGGTGCTGGGTCCCGGGCTTCTACCATGTGGAAATCACAGTGACCCAACTGTGGGATGGGGAGGACCAAATTTAGGACGCAGAGCTTGTGGGGACCAGACCTGCAGGGT---ATAGAACCTTCCAGAAGTGGGCAGCTGTGGTGCTGTCTTCTAGAGACAAGTAGAGATACACATGCCATGTGCAGCAGGAGGC-----ACTGCCAGAGCCCCTCACACTGAGATGGGCTAAGGAGATGAATGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30342356 391 + 173848474 CCCAGATGTCCTATCCATTCTCAGGATGGTCACATGGGTGCTGCTGGAGTGTCCCATGAGGAATGCAAAGTGCCTGA-ATTTTCTTACTCTTCCCCTCAGAATCCCAGAATACATGTGTGATCCACTACCCCATCTCAGACCCTGAGGCCACCCTGAGGTGCTGGGTCCCGGGATTCTACCATGTGGAAATCACAGTGACCCAACTGTGGGATGGGGAGGACCAAATTTAGGACGCAGAGCTTGTGGGGACCAGACCTGCAGGGT---ATAGAACCTTCCAGAAGTGGGCAGCTGTGGTGCTGTCTTCTAGAGACAAGTAGAGATACACATGCCATGTGCAGCAGGAGGC-----ACTGCCAGAGCCCCTCACACTGAGATGGGCTAAGGAGATGAATGA
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30499598 394 + 172585720 CCTTGGTGTCCTGTCCATTCTCAGGATGGTCACATGTATGCTGCTGGAGTGTCCCATGAGGAATGC--AGTGCCCGA-ATTTTCTGACTCTTTCCCTCAGATCCCCCAAAGACACACGTGACCCACCAGTCCATCTCAGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTACTACCCTGTGGAGATCACACTGACCCAGCAGCAGGATCGGAAGAACCAAATTCAAGATGCAGAGCTTATGGGAACCAGATCTACAGGGT---ACAGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGTCTTCTGGAGAGCAGCAGAGATACGCATGCCATGTGCAGCACGAGCACTCACCCTGCCAGAGCCCCTCACCCTGAGATTGGCTAAGGAGACGAATGA
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     157642 391 -    863181 CCCGGGTGTCCCGTCCATTCTCAGGATGGTCATACGGGTGCTGCTGGCATGTCCCATGGGGAATGCAAAGTGACTGATTTTTTTTGACTCTTCCCCTCAAATCCCCCAAAGACACGTGTGACCCACCACCCCATCTCAGACCATGAGGCCACCCTGAGGTGCTGGGCTCTGGGCTTCTACCCTGTGGAGATCACAATGACCCAACAGAGGAATGGAGAGGACCAAATTTAGGATGCACA-CTTCTGGGGACCAGACCTGCAGGGT---ACAGAACCTTCCAGAATTAGGCAACTGTGGTGGTGTTTTCTAGGGGGAAGTAGAGATACACATGCCATGTGCAGCCTGAGGA-----GCCGCCAGAGCCCCTCACCCTGAGATGGGGTAAGGAGACGAATGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29318853 391 -  71996105 CCCTGGTGTCCTGTCCATTCACAGGATGGTCACATGTATGCTGCTGGAATGTCCCATGAGGAATGCAAAGTGCCTGA-ATTTTCTGACTCTTCCCCTCAGATCCCCTAAAGACACACGTGACCCACCACCCCATGTCAGACCATAAGGCCAACCTGAGGTGCTGGGCCCTGGGCTACTACCCTGTGGAGATCACACTGACCCAGCAGCAGGATCAGAATAACCAAATTCAGGATGCAGAGCTTGTGGGGACCAGACCTACAGGGT---ATAGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGTCTTCTGGAGAGGAGCAGAGATACGCATGCCATGTGCAGCACGAGGG-----GCTGCCAGAGCCACTCACCCTGAGATGGGCTAAGGAGAAGAATGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     157537 391 +    273075 CCCGGGTGTCCCGTCCATTCTCAGGATGGTCATACGGGTGCTGCTGGCATGTCCCATGGGGAATGCAAAGTGACTGATTTTTTTTGACTCTTCCCCTCAAATCCCCCAAAGACACGTGTGACCCACCACCCCATCTCAGACCATGAGGCCACCCTGAGGTGCTGGGCTCTGGGCTTCTACCCTGTGGAGATCACAATGACCCAACAGAGGAATGGAGAGGACCAAATTTAGGATGCACA-CTTCTGGGGACCAGACCTGCAGGGT---ACAGAACCTTCCAGAATTAGGCAACTGTGGTGGTGTTTTCTAGGGGGAAGTAGAGATACACATGCCATGTGCAGCCTGAGGA-----GCCGCCAGAGCCCCTCACCCTGAGATGGGGTAAGGAGACGAATGA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      50464 391 -   1829203 CCCAGGTGTCCCAGCTATTCTCAGGATGGTCACATGGGCACTCCTGGAGTATCCCATGAGGAATACAAAGTGCCTGA-ATTTTCTGACTCTTCCCCTCAGATACCCTAAAGACACACGTGACCCACGACCCCATCTCTGATCATGAGGCCACCCTGAGGTGCTAAGTCCTGGGTTTCTACCCTGTGGAGATCATACTGACCTGGCAGTGGGATGGGGAGGACCAAATCCAGGACACAGAGGTTGTAGGGACCAGATCTGCAGAGT---ACAGAACCTTCTAGAAGTGGGTAGCTGTGGTGGTGTCTTCTGGAGAGAAGTAGAGATACACATGCCATGTGCAGCACGAGGT-----GCTTCCAGAGCCCCTCACCCTGAGATGAGCTAAGGAGATGAATGA
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     523761 387 -   1771730 CCCAGGTGTCCTGTCCATTCTCAGGATGGTCACATGAGCACTGCT-GGGTGTCCCATGAGGAGTGCAAAGTGTCTGA-ATTTTCTGCCTCTT---TTCAGATCCTCCAAAGGCACACGTTGCCCACCACCCTATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACGCTGACCTGGCAGAGGGATGGGGAGGAGCAGACCCAGGACACGGAGCTTGTGGAGACCAGGCCCGCAGGGG---ATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCTTTCTGGGGAGGAGCAGCGATACACGTGCCATGTGCAGCACGAGGG-----GCTGCCGGAGCCCTTCACCCTGAGATGGGGTAAGGAGTGAGATGG
i cebCap1.NW_016107755v1   T 69678 C 0
s aotNan1.NW_018496904v1     229579 390 -    383796 ACCAGGTGTCCTGTCCATTCTCAGGATGATCACGTGGGTGCTCCTGGGGTGTCCCATGAGAGATGCAAAGTGCCTGA-ATTTTCTGACTCTTCCCTTCAGTGCCCCCCAAGACACATATGACCCACCATCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACATGGAGCTTGTGGAGACCAGGCCCGCAGGGG---ATGGAAACTTCCAGAAGTGGGCGGCTGTGATGGTGCCTTCTGGAGAGGAGCAGAGATACACATGCCATGTGCAGCACGAGGG-----GCTGCCCGAGCCCCTCACCCTGAGATGGGGTAAGGAG-GGGATGG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17206291 392 -  18854210 CCCAGTTGTCCTGTCCTTTCTTAGGATG-TCACATGAGTGCTGCTGGAGCAT-CTATGAGGGATACAAAATGCCTGA-ATTTTCTTAATCTTCCCCTCAGATCCCCCAAAGACTCGTGTGACCCACCACCCCACCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGAGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGATCCAGGACATAGAGTTTATAGAAACCAGGCCTTCAGGGGACAACAGAACTTTCCAGAAGTGGGTGGCTGTGGTGGTGCTTCCTGGAGAGGAGCAGAGATATACGTGCCATGTGCAGCATGAGGG-----GCTGCAGGAGCCCCTCACCCTGAGATGGGGTAAGAAGGGGAGCGA
i otoGar3.GL873550         C 0 I 1
e micMur3.chr6               240797 2210 + 123392446 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74733049 5383 + 122973662 I

a score=298701.000000
s hg38.chr6_GL000254v2_alt  1153691 67 +   4827813 GGG-----------------GCCATGTCTCTTCTCAGGGAAAGCAGGAGCCCTTCTGGAGGCCTTCAGCAGGGTCAGGGCTGAG
s panTro5.chr6             30112061 67 + 175400573 GGG-----------------GCCATGTCTCTTCTCAGGGAAAGCAGGAGCCCTTCTGGAGGCCTTCAGCAGGGTCAGGGCTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30342747 67 + 173848474 GGG-----------------GCCATGTCTCTTCTCAGGGAAAGCAGGAGCCCTTCTGGAGGCCTTCAGCAGGGTCAGGGCTGAG
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30499992 67 + 172585720 GGG-----------------GTCATGTCTCTTCTCAGGGAAAGCAGGAGCCCTTCTGGAGCCCTTCAGCCAGGTCAGGGCTGAG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     158033 67 -    863181 GGC-----------------GTCATGTCTCTTCCCAGGGTAAGCAGAAGCCCTTCTGGAGCCCTTCACCAGGCTCAGGGCTGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29319244 67 -  71996105 GGG-----------------GTCATGTCTCTTCTCAGGGGAAGCAGGAACCCTTCTGGAACCCTTCAGTCAGGTCAGGGCTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     157928 67 +    273075 GGC-----------------GTCATGTCTCTTCCCAGGGTAAGCAGAAGCCCTTCTGGAGCCCTTCACCAGGCTCAGGGCTGAG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      50855 67 -   1829203 GGG-----------------GTCATGTCTCTTCTCAGGGAAAGCAGGAGTCCTTCTGGAGTCCTTCACCAGGGTCAGGGCTGAG
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     524148 84 -   1771730 GGTAAAGGGGAGGATGAGAGGTCATGTCTTTTCTCAGGAGAAGTAGGAGCCCTTCTGAAGCCATTCAGCAGGGTCAGGGCTAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     229969 64 -    383796 GGT-----------------GTCATGTC---TCTTAGGGAAAGCAGGAGCCCCTCTGCAGCCCTTCAGCAGGGTCAGGGCTGGA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               238587 66 + 123392446 GGG-----------------GTCAGGTCTCTTCTCAGGGAAATCAGGGGCC-CTCTGGAGCCCTTCAGCAGGGTCAGGGCTGAG
i micMur3.chr6             T 2210 I 343
s otoGar3.GL873550         17206684 61 -  18854210 GGC-----------------ATCACATTTCTTCTCAAG------AGGGGCCTTTCTGGAGCCCTTTAGAAGGCTCAGGGCTGAG
i otoGar3.GL873550         I 1 C 0
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74733049 5383 + 122973662 I

a score=320993.000000
s hg38.chr6_GL000254v2_alt  1153758 79 +   4827813 GCCTGGGGGTCAGGACCCCTCACGTTCCCCTCCTTTCTTAGGGCCATCTTCCCAGCCCACATTCCTCATCATGGGCATC
s panTro5.chr6             30112128 79 + 175400573 GCCTGGGGGTCAGGACCCCTCATGTTCCCCTCCTTTCTTAGGGCCATCTTCCCAGCCCACATTCCCCATCGTGGGCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30342814 79 + 173848474 GCCTGGGGGTCAGGACCCCTCATGTTCCCCTCCTTTCTTAGGGCCATCTTCCCAGCCCACATTCCCCATCGTGGGCATC
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30500059 79 + 172585720 GCCTGGGGGTCAGGGTCCCCCACAGTCCCCTCCTTTCTTAGGGCCATCTTCCCAGCCCACATTCCCCATTGTGGGCATC
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     158100 79 -    863181 GCATGAGGGTCAGGGCCCCTCACATTCGCCTTCTTTCTCAGGGCCATCCTCCCAGCCCACAGTCCCCATTGTGGGCATC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29319311 79 -  71996105 GCCTGGGGGTCAGGGCCCCTCACAGTCCCCTCCTTTCTCAGGGCCATCTTCCCAGCCCACATTCCCCATTGTGGGCATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     157995 79 +    273075 GCATGAGGGTCAGGGCCCCTCACATTCGCCTTCTTTCTCAGGGCCATCCTCCCAGCCCACAGTCCCCATTGTGGGCATC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      50922 79 -   1829203 GCATGAGGGTCAGGGCCCCTCACATTCGCCTCCTTTTTCAGGGCCATCCTCCCAGCCCACATTCCCCATCGTGGGCATC
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     524232 79 -   1771730 ATCTGGGGATCAGGGCCCCTCACCTTCCCCTCCTTTCCCAGAGCCATCTTCCCAGCCCACCGTCCCCATCGTGGGCATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     230033 79 -    383796 GCCTGGGGATCAGGGCTCCTCACCCTCCCCTCCTTTCCCAGAGCCGTCTTCCCAGCCCACCATCCCCATCGTGGGCATC
i aotNan1.NW_018496904v1   C 0 I 58387
s otoGar3.GL873550         17206745 77 -  18854210 GCCTG-GGGTCAGG-CCCCTCACCTTCCTGTCCTTTCCCAGAGCCATCTTCCCAGCCCAGCATGCCCATGGTGAGCATT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               238653 343 + 123392446 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74733049 5383 + 122973662 I

a score=250171.000000
s hg38.chr6_GL000254v2_alt  1153837  80 +   4827813 GTTACCGTCCTGGTTGTTCTAGGT---------------GCTGTGGTCACT---GCTGTGATGTGGAAGAATAAGACCCCAGGTAGGAAAGGGGTGAG-------
s panTro5.chr6             30112207  80 + 175400573 GTTACTGTCCTGGTTGTTCTAGGT---------------GCTGTGGTCACT---GCTGTGATGTGGAAGAATAAGACCACAGGTAGGAAAGGGGTGAG-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30342893  80 + 173848474 GTTACTGTCCTGGTTGTTCTAGGT---------------GCTGTGGTCACT---GCTGTGATGTGGAAGAATAAGACCACAGGTAGGAAAGGGGTGAG-------
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30500138  95 + 172585720 GTTACTGTCCTGGTTGTTCTTGGTGCTGTGGTCCCGGGTGCTGTGGTCGCT---GCTGTGATGTGGAAGAATAAGAGCCCAGGTAGGAAAGAGTTGAA-------
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     158179  95 -    863181 ATTACTGTCCTGGCTGTTCTTGGTGCTGTTGTCCCCGGAGCTGTGGTCGCT---GCTGTGATGTGGAAGAACTAGAGCCCAGGTAGGAAAGAGTTGAG-------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29319390  94 -  71996105 ATTACTGTCCTGGTTGTTCTTGGTGCTGTGGT-CCCGGAGCTGTGGTCACT---GCTGTGATGTGGAAGAATAAGAGCCCAGGTAGGAAAGAGGTGAG-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     158074  95 +    273075 ATTACTGTCCTGGCTGTTCTTGGTGCTGTTGTCCCCGGAGCTGTGGTCACT---GCTGTGATGTGGAAGAAAAAGAGCCCAGGTAGGAAAGAGGTGAG-------
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      51001  95 -   1829203 GTTACTGTCCTGGTTGTTCTTGGTGCTGTGGTTCCCACAGCTGTGGTCGTT---GCTGTGATATTGAAGAATAAGAGACCAGGTAGGAAAGAGGTGAG-------
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     524311  83 -   1771730 GTTGCTGGCCTGGTTGTCCTTGGA---------------GCTGTGGTCACTGGAGCTGTGATGTGGAGGAAGAAGATCTCAGGTTGGGAAGGGGTGAG-------
i cebCap1.NW_016107755v1   C 0 T 96042
s otoGar3.GL873550         17206822 102 -  18854210 GTTGCTGGCCTGCTTCTCCTTGGAGCTTTGCTCACTGGAGCTGTGGTCGCT---GCTGTGATGTGGAGGAAGAAGAGCTCAGGTACAGAAGCAGTGAGAGGTGAG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               238653 343 + 123392446 I
e aotNan1.NW_018496904v1     230112 58387 -    383796 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74733049 5383 + 122973662 I

a score=264877.000000
s hg38.chr6_GL000254v2_alt  1153917 112 +   4827813 TTCCAAGATTTCTTCTTCCATTCGTGGATTTCAAGCTCCAGATGGAAGTTGGCTCATTTCCTGCCTAGTTGTGAGACACCATCTCCACACACAT--TTACCCTGTTCAGATGCC
s panTro5.chr6             30112287 112 + 175400573 TTCCAAGATTTCTTCTTCCATTCGTGGATTTCAAGCTCCAGATGGAAGTTGGCTCATTTCCTGCCTAGTTGTGAGACACCATCTCCACACACAT--TTACCCTGTTCAGATGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30342973 112 + 173848474 TTCCAAGATTTCTTCTTCCATTCGTGGATTTCAAGCTCCAGATGGAAGTTGGCTCATTTCCTGCCTAGTTGTGAGACACCATCTCCACACACAT--TTACCCTGTTCAGATGCC
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30500233 112 + 172585720 CTCCTAGTTTTCTTCTTCCATTGGTGGATTTCAAGCCCCAGATGGAAGTTGGCTCCTTTCCTGCCTAGTTGTGAGGCACCATCTCCATGCACAT--TTACCCTGTTCAGATGCT
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     158274 110 -    863181 CTCCAAGTTTTCTTCTTCCATTGGTGGATTTCAAG-CCCAGATGGAAGCTGGCTCATTTCCTGCC-AGTTGTGAGGCACCATCTCCATGCACAT--TTACCCTGTTCAGATGCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29319484 112 -  71996105 CTCCTAGTTTTCTTCTTTCATTGGTGGATTTCAAGCCCCAGACGGAAGTTGGCTCCTTTCCTGCCTAGTTGTGAGGCACCATCTCCACGCACAT--TTACCCTGTTCAGATGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     158169 111 +    273075 CTCCTAGTTTTCTTCTTTCATTGGTGGATTTCAAGCCCCAGATGGAAGCTGGCTCCTTTCCTGCC-AGTTGTGAGGCACCATCTCCATGCACAT--TTACCCTGTTCAGATGCC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      51096 112 -   1829203 CTCCGAGTTTTCTTCTTCCATTGGTGGATTTCAAGCCCCAGATGGAAGTTGGCTCATTTCCTGCCTAGTTGTGAGGCACCATCTCCTGAACCAT--TTACCCTGTTCAGATGCC
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550         17206924 108 -  18854210 GTCTGCATTTTCTTGTTTCAC---TGGAGTTTCAACTCCAAGTAGCAGAGTGCCCCCACCCCACT--GCTGGGAAGTGCCATCCACATATACCTGCTTACCCAG-CCTGGCACC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               238653 343 + 123392446 I
e aotNan1.NW_018496904v1     230112 58387 -    383796 I
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74733049 5383 + 122973662 I

a score=214243.000000
s hg38.chr6_GL000254v2_alt  1154029 70 +   4827813 ----CTGTCAACTCTCACTCTTTTGTAAAGCACCTGTGAAATTGAAGGACAAA--TTTATCACCTTGATTGTGATC--
s panTro5.chr6             30112399 70 + 175400573 ----CTGTCAACTCTCACTCTTTTGTAAAGCACCTGTGAAATTGAAGGACAAA--TTTATCACCTTGATTGTGATC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30343085 70 + 173848474 ----CTGTCAACTCTCACTCTTTTGTAAAGCACCTGTGGAATTGAAGGACAAA--TTTATCACCTTGATTGTGATC--
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74738432 70 + 122973662 ----CTATCAACACTTACTCTTTTGTAAAGAACTTGTGAAAATGAAGGACAAA--TTTATCACCTTCATTGGAGTC--
i nomLeu3.chr1a            I 5383 C 0
s rheMac8.chr4             30500345 70 + 172585720 ----CTGTCAACTCTTACTCTTTTGTAAAGCACCTGTGAAATTGAAGGACAAA--TGTATCACCATGATTGTGGAC--
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     158384 70 -    863181 ----CTGTCAACTCTTACTCTTTTGTAAAGCACCTGTGATATTGAAGGACAAA--TGTATCATCTTGATTGTGGTC--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29319596 70 -  71996105 ----CTGTCAACTCTTACTGTTTTGTAAAGCACCTGTGAAATTGAAGGACAAA--TGTATCACCATGATTGTGGAC--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     158280 70 +    273075 ----CTGTCAACTCTTACTCTTTTGTAAAGCACCTGTGATATTGAAGGACAAA--TGTATCATCTTGATTGTGGTC--
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      51208 70 -   1829203 ----CTGTCAACTCTTGCTCTTTTGTAAAGCACCTGTGATATGGAAGCACAAA--TTTATCACCTTGATTGTGGTC--
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550         17207032 78 -  18854210 CTGTGTGCCAACACTTACTCTTTTATATAGCACATCTGACAGTGAAGAACAGAGTTTTAATGTAATGATTGCGCTGTA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               238653 343 + 123392446 I
e aotNan1.NW_018496904v1     230112 58387 -    383796 I
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e macFas5.chr4             29884116 3584 - 170955103 I

a score=125255.000000
s hg38.chr6_GL000254v2_alt  1154099 33 +   4827813 ATGGGAACCTGA-CTCCCAGCAGTCACAAGTCAG
s panTro5.chr6             30112469 33 + 175400573 ATGGGAACCTGA-CTCCCAGCAGTCACAAATCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30343155 33 + 173848474 ATGGGAACCTGA-CTCCCAGCAGTCACAAATCAG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74738502 33 + 122973662 ATGGGAACTTGA-CTCCCAGCAGACACAGGTCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30500415 33 + 172585720 ATGGGAACCTGA-CTCCCAGCAGTCACAGGTCAG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     158454 33 -    863181 ATGGGAACCTGA-CTCTCTGCAGTCACAGGTCAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29319666 33 -  71996105 ATGGGAACCTGA-CTCCCAGCAGTCACAGATCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     158350 33 +    273075 ATGGGAACCTGA-CTCTCTGCAGTCACAGGTCAG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      51278 33 -   1829203 ATGGAAACCTGA-CTCCCAGCAGTCACAGGTCAG
i colAng1.NW_012115577v1   C 0 C 0
s micMur3.chr6               238996 33 + 123392446 ATGGGGACCTGA-CCCCCAGCAGTCACAGGTCAG
i micMur3.chr6             I 343 I 143
s otoGar3.GL873550         17207110 30 -  18854210 ATGATTGCTTGATCCCCCAGAAG----GGGTAAA
i otoGar3.GL873550         C 0 I 2
e aotNan1.NW_018496904v1     230112 58387 -    383796 I
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e macFas5.chr4             29884116 3584 - 170955103 I

a score=95521.000000
s hg38.chr6_GL000254v2_alt  1154132 35 +   4827813 GAGAATGTTCCTGCTGAGGACAGATGT---------------------------CAAAAGGA
s panTro5.chr6             30112502 35 + 175400573 GAGAATGTTCCTGCTGAGGACAGATGT---------------------------CAAAAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30343188 35 + 173848474 GAGAATGTTCCTGCTGAGGACAGATGT---------------------------CAAAAGGA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74738535 35 + 122973662 GGGAAGGTACCCGCAGAGGACAGATCT---------------------------CACTAGGA
i nomLeu3.chr1a            C 0 I 731
s rheMac8.chr4             30500448 35 + 172585720 GGGAAGGTCCCTGCTGAGGACAGACCT---------------------------CAGGAGGA
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     158487 35 -    863181 GGGAAGGTGCCTGCTGAGGACAGACCT---------------------------CAGGAGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29319699 35 -  71996105 GGGAAGGTCCCTGCTGAGGACAGATGT---------------------------CAGTAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     158383 35 +    273075 GGGAAGGTGCCTGCTGAGGACAGACCT---------------------------CAGGAGGA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      51311 35 -   1829203 GAGAAGGTCCCTGCTGAGGACAGACGT---------------------------CAGGAGGA
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550         17207142 62 -  18854210 AGGAAGGACCTTACTCAGGATAGACCTCCATGTTGTCCTGTCCATTCTGCCCTCCAGGAGGG
i otoGar3.GL873550         I 2 C 0
e micMur3.chr6               239029 143 + 123392446 I
e aotNan1.NW_018496904v1     230112 58387 -    383796 I
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e macFas5.chr4             29884116 3584 - 170955103 I

a score=207364.000000
s hg38.chr6_GL000254v2_alt  1154167 80 +   4827813 CATTTGGTTCAGCTTCAACACATCCTCTTCCCTCGGGTTTTCTGATCCTGACCTGGGTCTGCAGTCACAGTTCTGGAAAC
s panTro5.chr6             30112537 80 + 175400573 CATTTGGTTCAGCTTCAACACATCCTCTTCCCTCGGGTTTCCTGATCCTGACCTGGGTCTGCATTCACAGTTCTGGAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30343223 80 + 173848474 CATTTGGTTCAGCTTCAACACATCCTCTTCCCTCGGGTTTCCTGATCCTGACCTGGGTCTGCATTCACAGTTCTGGAAAC
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30500483 80 + 172585720 CAATTGGTCCAGCTTCAACACACCCTCTTCCCTCAGTTTTCCTGATCCTGACCTGGGTCTGCAGTCACAGTTCTGGAAAC
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     158522 80 -    863181 CAATTGGTCTAATTTCTATACATCCTCTTCCCTCAGGTTTCCTGATCCTGACCTGGGTCTGCAGTCACAGTTCTGGAAAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29319734 80 -  71996105 CAATTGGTCCAGCTTCAACACATCCTTTTCCCTCAGTTTTCCTGATCCTGACCTGGGTCTGCAGTCACAGTTCTGGAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     158418 80 +    273075 CAATTGGTCTAATTTCTATACATCCTCTTCCCTCAGGTTTCCTGATCCTGACCTGGGTCTGCAGTCACAGTTCTGGAAAC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      51346 80 -   1829203 CAATTGGTCCAGCTTCAACACTTCCTCTTTCCTTGGGTTTCCTGATCCTGACCTGGGTCTGCAGTCACAGTTCTGGAAAC
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550         17207204 72 -  18854210 CAGTTGA-------TCAACTCTTTC-CTTCTCCTGTGATTCTTGATTCTGCCCTGGCTCTTTAGGCATAGTTCTGGAAAC
i otoGar3.GL873550         C 0 I 26
e micMur3.chr6               239029 143 + 123392446 I
e aotNan1.NW_018496904v1     230112 58387 -    383796 I
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74738570 731 + 122973662 I

a score=155854.000000
s hg38.chr6_GL000254v2_alt  1154247 43 +   4827813 TCCTC-TAGGATCTCATGGCCCTGCCTCTTCCCTGGCCTCTCAC
s panTro5.chr6             30112617 43 + 175400573 TCCTC-TAGGATCTCATGGCCCTGCCTCTTCCCTGGCTTCTCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30343303 43 + 173848474 TCCTC-TAGGATCTCATGGCCCTGCCTCTTCCCTGGCTTCTCAC
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30500563 43 + 172585720 TTCTC-TGGGATCTCACAGCCCTGCCTCCTCCCTGGCCTCTCAC
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     158602 43 -    863181 CCCTC-TGGGATCTCATGGCCCTGCCTCCTCCCTGGCCTCTCAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29319814 43 -  71996105 TCCTC-TGGGATCTCACGGCCCTGCCTCCTCCCTGGCCTCTCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     158498 43 +    273075 CCCTC-TGGGATCTCATGGCCCTGCCTCCTCCCTGGCCTCTCAC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      51426 44 -   1829203 TCCTCTTGGGATCTCATGGCCCTGCCTCCTCCCTGGCCTCTCAC
i colAng1.NW_012115577v1   C 0 C 0
s micMur3.chr6               239172 43 + 123392446 TCCTC-TAGGACCTCATGGCCTTGTCTCCTCCCTGGCTTCTCAC
i micMur3.chr6             I 143 I 80
s otoGar3.GL873550         17207302 43 -  18854210 TCCTC-TAGGACCACATGGTCCTGCCTGCTTCCTGGCCTCTCAA
i otoGar3.GL873550         I 26 C 0
e aotNan1.NW_018496904v1     230112 58387 -    383796 I
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74738570 731 + 122973662 I

a score=196518.000000
s hg38.chr6_GL000254v2_alt  1154290 80 +   4827813 AGTTTGTTTTCTTTCCTCATATGGAAAAGGAGTCAGCTATGCTCAGGCTTCAAGTAAGTGTGGTAGGGGTGGGAGAGTGA
s panTro5.chr6             30112660 80 + 175400573 AGTTTGTTTTCTTTCCTCATATGGAAAAGGAGTCAGCTATGCTCAGGCTTCAAGTAAGTGTGGTAGGGGTGGGAGAGTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30343346 80 + 173848474 AGTTTGTTTTCTTTCCTCATATGGAAAAGGAGTCAGCTATGCTCAGGCTTCAAGTAAGTGTGGTAGGGGTGGGAGAGTGA
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30500606 79 + 172585720 AGTTTGTTTTCTTTCCACAGATGGAAAAGGAG-CAGCCGTGCTCAGGCTTCATGTAAGTGTGGTAGGGGTGGGAGAGTGA
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     158645 77 -    863181 AGTATGTTTTCTTTCCACAGATGGAAAAGGAT---GCCATGCTCAGGCTTCATGTAAGTGTGGTAGGGGTGGGAGAGTGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29319857 80 -  71996105 AGTTTGTTTTCTTTCCACAGATGGAAAAGGAGGCAGCTATGCTGAGGCTTCATGTAAGTGTGGTAGGGGTGGGATAGTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     158541 77 +    273075 AGTATGTTTTCTTTCCACAGATGGAAAAGGAT---GCCATGCTCAGGCTTCATGTAAGTGTGGTAGGGGTGGGAGAGTGA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      51470 80 -   1829203 AGTTTGTTTTCTTTCCACAGATGGAAAAGGAGGCAGCTATTCTCAGGCTACATGTAAGTGTGGTAGGGGTGGGAGAGTGA
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550         17207345 72 -  18854210 AGGACATTTTCTTCCCACAGGTGGAAATGGAGGGAGGTACACTCAGGCTGCAAGTAAGTAT----GGGGTTGGTGA----
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               239215 80 + 123392446 I
e aotNan1.NW_018496904v1     230112 58387 -    383796 I
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74738570 731 + 122973662 I

a score=15288.000000
s hg38.chr6_GL000254v2_alt  1154370 5 +   4827813 TTCCT
s panTro5.chr6             30112740 5 + 175400573 TTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30343426 5 + 173848474 TTCCT
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30500685 5 + 172585720 TCCCT
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     158722 5 -    863181 TCCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29319937 5 -  71996105 TCCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     158618 5 +    273075 TCCCT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      51550 5 -   1829203 TCCCT
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     288499 5 -    383796 TTCCT
i aotNan1.NW_018496904v1   I 58387 C 0
s otoGar3.GL873550         17207417 5 -  18854210 TCTGT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               239215 80 + 123392446 I
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74738570 731 + 122973662 I

a score=316631.000000
s hg38.chr6_GL000254v2_alt  1154375  88 +   4827813 GAGATCCTTGGAATAGTGTAGACAGGAGCCC--------------------ATGGG-GGAGGT-CA-CCACCCCACAATTCCTCCTTTAGTCACATCACCTGTGGGCTCTG
s panTro5.chr6             30112745  88 + 175400573 GAGATCCTTGGAATAGTGTAGACAGGAGCCC--------------------AT-GG-GGAGCA-CAGCCACCCCAAAATTCCTCCTTTAGTCACATCATCTGTGGGCTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30343431  89 + 173848474 GAGATCCTTGGAATAGTGTAGACAGGAGCCC--------------------ATGGG-GGAGCA-CAGCCACCCCAAAATTCCTCCTTTAGTCACATCACCTGTGGGCTCTG
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30500690  87 + 172585720 GAGATCCTTGGGATAGTGTACACAGAAGCCC--------------------ATGG--GGACCT-CA-CCACCCCACAATTCCTCCTTTAGTCACATCACCTGTGAGCTCTG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     158727 110 -    863181 GAGATCCTTGGGATAGTGTAGACAGGAGCCCTGTCTACAGGGTGTAGACAGGTGGGTGGAGCT-CACCCACCTCACAATTCCTCCTTTAGTCACATTATCTGTGGGCTCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29319942  89 -  71996105 GAGATACTTGGGATAGTGTACACAGGAGCCC--------------------ATGGG-GGAGCT-CACCCACCCCACAATTCCTCCTTTAGTCACATCACCTGTGAGCTCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     158623 110 +    273075 GAGATCCTTGGGATAGTGTAGACAGGAGCCCTGTCTACAGGGTGTAGACAGGTGGGTGGAGCT-CACCCACCTCACAATTCCTCCTTTAGTCACATTATCTGTGGGCTCTG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      51555  88 -   1829203 GAGATCCTTGGGATAGTGTAGACAGGAGCCC--------------------ATGGG-GGAGCT-CA-CCACCCCACAATTCCTCCTTTAGTCACATCACCTGTGAGCTCTG
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     288504  89 -    383796 GAGACCCTTGGAACAGTGTAGACAGGAGCAC--------------------ATGGG-GGAGCT-CACCCACTCTACAGTTCTTCCTTTGGTCACATCACCTGTGGACTCTG
i aotNan1.NW_018496904v1   C 0 N 0
s micMur3.chr6               239295  88 + 123392446 GAGACCTTTGGGATAGTGTAGACATGAGCCC--------------------ATGGG-GGAGCTCCA-CCACCCCA-TAATCCTCCTGTTGCCACATGTCCCGTGGGCTCTG
i micMur3.chr6             I 80 C 0
s otoGar3.GL873550         17207422  87 -  18854210 GAGGCCTTTGGGATAGTGTAGACAGGAGCCC--------------------ATGGC-GGAGCT-CA-TAGCCACT-AATTCCTTCTTTAGCCACATTTTCTGTGGACTCTG
i otoGar3.GL873550         C 0 C 0
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74738570 731 + 122973662 I

a score=15707.000000
s hg38.chr6_GL000254v2_alt  1154463 5 +   4827813 ACCAG
s panTro5.chr6             30112833 5 + 175400573 ACCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30343520 5 + 173848474 ACCAG
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30500777 5 + 172585720 AACAG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     158837 5 -    863181 AACAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29320031 5 -  71996105 AACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     158733 5 +    273075 AACAG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      51643 5 -   1829203 AGCAG
i colAng1.NW_012115577v1   C 0 C 0
s micMur3.chr6               239383 5 + 123392446 ACCAG
i micMur3.chr6             C 0 N 0
s otoGar3.GL873550         17207509 5 -  18854210 ACCAG
i otoGar3.GL873550         C 0 C 0
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74738570 731 + 122973662 I

a score=1043480.000000
s hg38.chr6_GL000254v2_alt  1154468 434 +   4827813 ACTTTGTTTTTGTTCCACCCCAAACAGGAACAGTACCCAGGGCTCTGATGTGT-CTCTCAAGTCT-----------------------TGTAAAAGTGACACCTTAGAGGGCCTGAAGTGAAGGAGGAGTTGGGGCAGATGGGACACAACTAGGCTCTAGAGAGTCTTTGATTTGGAATTTTTCA--ATGTGTGGTGGGCTGTTC--AGTGTCACCACTTACCATGACTGACTTGAATTTGTTCACGA------ATA---TTTTCTTT---CCAAGA---CTGCCTTGTGAGGGACTGAGATGCAAGATTTGTTCATGGCTCCACTTTGAGACTTCAAGGGCCTCTGTTTTCTCTTTCTGCCAAGGCATCTGAATGTGTCTATGTCCCTGGTAACATGT----GAGAAGTGGAG---AGACCAGCCCACCCTCATGTCCACCATGACCCCtgatattgtttggatctgtgtccccacccaaatc
s panTro5.chr6             30112838 432 + 175400573 ACTTTGTTTTTGTTTCACCCCAAACAGGAACAGTACCCAGGGCTCTGATGTGT-CTCTCAAGTCT-----------------------TGTAAAAGTGACACCTTAGAGGGCCTGAAGTGAAGGAGGAGTTGGGGCAGATGGGACACAACTAGGCTCT--AGAGTCTTTGATTTGGAATTTTTCA--ATGTGTGGTGGGCTGTTC--AGTGTCACCACTTACCATGACTGACTTGAATTTGTTCATGA------CTA---TTTTTTTT---CTAAGA---CTGCCTTGTGAGGGACTGAGATGCAAGATTTGTTCATGGCTCCACTTTGAGACTTCAAGGGCCTCTGTCTTCTCTTTCTGCCAAGGCATCTGAATGTGTCTATGTCCCTGGTAACATGT----GAGAAGTGGAG---AGACCAGCCCACCCTCATGTCCACCATGACCCCtgatattgtttggatatgtgtccccacccaaatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30343525 431 + 173848474 ACTTTGTTTTTGTTCCACCCCAAACAGGAACAGTACCCAGGGCTCTGATGTGT-CTCTCAAGTCT-----------------------TGTAAAAGTGACACCTTAGAGGGCCTGAAGTGAAGGAGGAGTTGGGGCAGATGGGACACAACTAGGCTCT--AGAGTCTTTGATTTGGAATTTTTCA--ATGTGTGGTGGGCTGTTC--AGTGTCACCACTTACCATGACTGACTTGAATTTGTTCATGA------CTA---TTTT-TTT---CTAAGA---CTGCCTTGTGAGGGACTGAGATGCAAGATTTGTTCATGGCTCCACTTTGAGACTTCAAGGGCCTCTGTCTTCTCTTTCTGCCAAGGCATCTGAATGTGTCTATGTCCCTGGTAACATGT----GAGAAGTGGAG---AGACCAGCCCACCCTCATGTCCACCATGACCCCtgatattgtttggatatgtgtccccacccaaatc
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30500782 440 + 172585720 ATTTTGGTTTTGTTCCACCCCGAACAGGAACTGTGCCCAGGGCTCTGATGTGT-GTCTCAAGGCT-----------------------TATAAAAGTGATACCTTAGAGGGCCTGAAGTGAAGGAGGAGTTGGGGCAGATGGGACACAACTAGGCTCTGGAGATTCTTTGATTTGGAATATTTCAGTGTGTGT--TGGGCTGTTC--AGTGTCACCACTTACCATGACTGACTTGAATTTGTTTATGATACTACTTT---TTTCTTTT---CTAAGA---CTTCCTTGTGAGGGACTGAGATGCAAGATTTCTTCATAGCTCCTCTTTGAGACTTCAAGGGCCTCTGGCTTCTTTTTCTGCCAAGCAGTCTGAATGTGACTATGTCCCTGGTAACAGGT----GAGAAGTGGGG---ATACCAGCCAACCCTCATATCCACCATGACCCCtgatatcgtttgaatctatgtccccacccaaatc
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     158842 429 -    863181 ATTTTGTTTTTCTTGCACCCCGAACAGGAACAGTACCCAGGGCTCTGATGTGT-CT-TCAAGGCT-----------------------TGTAAAA-TGACACCTTAGAGGGCCTGAAGTGAAGGAGGAGTTGGGGAAGATGGGACACAACTAGGTTCTGGAGATTCTTTGATTTGGAATTTTTCA--ATGTGT--TGGGCTGTTC--AGTGTCACCACTTACCATGACTGACTTGAATTTGTTCACAA------CTA---TTTTTTTT---CTAAGA---CTGCCTTGCGAGGGACTGAGATGCAAGATTTGTTCATGGCTCCTCTTT-AGACTTCAAGAGCCTCTGGCTTCTCTTTCTGCCAAGGCGTCTGAATGTGTCTGTGTCCCTGGTAACAGGT----GAGAAACAGGG---AGACCAGCCTACCCTCATGTCCACCATGACCCCtgatatggtttggatctgtgtccccacccaaatc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29320036 436 -  71996105 ATTTAGTTTTTGTTCCACCCCGAACGGGAAGAGTACCCAGGGCTCTGATGTGTCCC-TCAAGGCT-----------------------TATAAAA-TGACATCTTAGAGGGCTTGAAGTGAAGGAGGAGTTGGGGCAGATGGGACACAACTAGGCTCTGGAGATTCTTTGATTTGGAATTTTTCA--ATGTGTGGTGGGCTGTTC--AGTGTCACCACTTACCATGACTGACTTGAATTTGTTCATGA------CTAATTTTTCTTTT---CTAAGA---CTTCCTTGTGAGGGACTGAGATGCAAGATTTGTTCATGGCTCCTCTTTGAGACTTCAGGGGCCTCTGGCTTCTTTTTCTGCCAAGCAGTCTGAATGTGTCTATGTCCCTGGTAACAGGT----GAGAAGTGGGG---ATACCAGCCAACCCTCATGTCCACCATGGCACCtgatagcatttgaatctatgtccccacccaaatc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     158738 429 +    273075 ATTTTGTTTTTCTTGCACCCCGAACAGGAACAGTACCCAGGGCTCTGATGTGT-CT-TCAAGGCT-----------------------TGTAAAA-TGACACCTTAGAGGGCCTGAAGTGAAGGAGGAGTTGGGGAAGATGGGACACAACTAGGTTCTGGAGATTCTTTGATTTGGAATTTTTCA--ATGTGT--TGGGCTGTTC--AGTGTCACCACTTACCATGACTGACTTGAATTTGTTCACAA------CTA---TTTTTTTT---CTAAGA---CTGCCTTGCGAGGGACTGAGATGCAAGATTTGTTCATGGCTCCTCTTT-AGACTTCAAGAGCCTCTGGCTTCTCTTTCTGCCAAGGCGTCTGAATGTGTCTGTGTCCCTGGTAACAGGT----GAGAAACAGGG---AGACCAGCCTACCCTCATGTCCACCATGACCCCtgatatggtttggatctgtgtccccacccaaatc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      51648 433 -   1829203 ATTTTGTTTTTATTCCAGCCCGAACAGAAACAGTACCCAGGACTCTGATGTGT-CTCTCAAGGCT-----------------------TGTAAAAGTGACACCTTAGAGGGCCTGAAGTGAAGGAGGAGTTGGGGCAGATGGGACACAACTAGGCTCTGGAGATTCTTTGATTT-GAATTTTTCA--GTGTGGGGTGTGATGTTC--AGTGTCACCACTTACCATGACTGACTTGAATTTGTTCATGA------CTA---TTTTTTTT---CTAAGA---CTGCCTTGTAAGTGACTGAGATGCAAGATTTGTTCATGGCTCCTCTTTGAGACTTCAAGGGCCTCAGGCTTCTCTTTCTGCCAAGGCGTCTGAATGAGTCTATGTTCCTGGTAAAAGGT----GAGAAGTGGGG---AGACCAGCCCACCCTCATGTCCACCATGAGCCCtgatatcatttggatctgtttccccacccaaatc
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550         17207514 449 -  18854210 GTCCGGTTTTGGT---AAACCAGGCAGTGACACCAGTCTGGGATCCAATGGGT-CTCTTACAGCTAGCTTGAGACCCAGAGGATGTGATGTAAGGGTGAGACC-CAGAGGGTGTGATGT-AAGGGTGAGGTGAGGCAAAGGGGACACAGCTGGGCTGT-GAGGTTTTTTGATGAGACATTCTGCA---TATGTGGTGGGCTATTCAGAGTGTCACCACTTACCAGAACTGACCTCAATTTTTTTCTTA------TTT---TTTTCTATAGCCTGAGAAAGCTGCCT-----GTGGCTACG----------TGTTCATGTTTCCCCTTA-TGACTTTAAGAGGCTCTGACTTCTCTTTCTGTAAATGCTTCTGGATGACTCTACATCCCTGCTTGCCTATTGTGAAGAGGTGGAGCGTCGTCCACCCTACCCCCATGTCCACAGTGACCCCTTCTCTCACACTGACCTGTGTGCTTTCCTGATTA
i otoGar3.GL873550         C 0 C 0
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74738570 731 + 122973662 I

a score=5721.000000
s hg38.chr6_GL000254v2_alt  1154902 2 +   4827813 tc
s panTro5.chr6             30113270 2 + 175400573 tc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30343956 2 + 173848474 tc
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74739301 2 + 122973662 tc
i nomLeu3.chr1a            I 731 C 0
s rheMac8.chr4             30501222 2 + 172585720 cc
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     159271 2 -    863181 cc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29320472 2 -  71996105 cc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     159167 2 +    273075 cc
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      52081 2 -   1829203 tc
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550         17207963 2 -  18854210 TC
i otoGar3.GL873550         C 0 N 0
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e macFas5.chr4             29884116 3584 - 170955103 I

a score=324839.000000
s hg38.chr6_GL000254v2_alt  1154904 120 +   4827813 atgctcacttgtaatccctaatgttggaggtggtgcttggtgggacgtgattggctcatgaggatggatgattcatgaatggtttagaatcatctctttcatgctgttcttgtgatagtT
s panTro5.chr6             30113272 120 + 175400573 atgctcacttgtaatccctaatgttggaggtggtgcttggtgggacatgattggctcatgaggatggatcattcatgaatggtttagaatcatctctttcatgctgttcttgtgatagtT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30343958 120 + 173848474 atgctcacttgtaatccctaatgttggaggtggtgcttggtgggacatgattggctcatgaggatggatcattcatgaatggtttagaatcatctctttcatgctgttcttgtgatagtT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74739303 119 + 122973662 atattcacttgtaatccctaaggttggaggtggcacctcac-ggaggtggttggcccatgaggatggatctttcatgaatggcttagaaccatctctttggtgctgttcttgtgatagtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30501224 117 + 172585720 atgtccacttgtaatccctaa---tggaggtggcacccggtgggaggtgattggctcatggggatggatcctccatgaatggcttagaaccatctctttggtgctgttcttgtgatagtt
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     159273 120 -    863181 atgtccacttgtaatacctaatgttggaggtggcgcctgatgggatgtgactggcttatgggggtggattctccatgaatggtttagagtcatctctttgatgctgttcttgtgatagtt
i cerAty1.NW_012002535v1   C 0 I 844
s chlSab2.chr17            29320474 120 -  71996105 atgtccacttgtaatccctaatgttggaggtggcacctagtgggaggtgattggcttatggggatggatcccccatgaatggtttagagtcatctctttgatgctgttcttgtgatagtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     159169 120 +    273075 atgtccacttgtaatacctaatgttggaggtggcgcctgatgggatgtgactggcttatgggggtggattctccatgaatggtttagagtcatctctttgatgctgttcttgtgatagtt
i manLeu1.NW_012101121v1   C 0 I 817
s colAng1.NW_012115577v1      52083 120 -   1829203 atgtccacttgtaatccctaatgttagaggttgtgcctgatgggagatgattggcttgtggggatagatcctctatgaatggttaagaaccatatctttgatgctgttcttgtgatagtt
i colAng1.NW_012115577v1   C 0 C 0
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e macFas5.chr4             29884116 3584 - 170955103 I

a score=3600.000000
s hg38.chr6_GL000254v2_alt  1155024 1 +   4827813 c
s panTro5.chr6             30113392 1 + 175400573 c
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30344078 1 + 173848474 c
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74739422 1 + 122973662 c
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30501341 1 + 172585720 c
i rheMac8.chr4             C 0 I 5360
s cerAty1.NW_012002535v1     160237 1 -    863181 c
i cerAty1.NW_012002535v1   I 844 C 0
s chlSab2.chr17            29320594 1 -  71996105 c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     160106 1 +    273075 c
i manLeu1.NW_012101121v1   I 817 C 0
s colAng1.NW_012115577v1      52203 1 -   1829203 c
i colAng1.NW_012115577v1   C 0 I 541
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e macFas5.chr4             29884116 3584 - 170955103 I

a score=3276.000000
s hg38.chr6_GL000254v2_alt  1155025 1 +   4827813 t
s panTro5.chr6             30113393 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30344079 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74739423 1 + 122973662 t
i nomLeu3.chr1a            C 0 I 1810
s rheMac8.chr4             30506702 1 + 172585720 t
i rheMac8.chr4             I 5360 C 0
s cerAty1.NW_012002535v1     160238 1 -    863181 t
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29320595 1 -  71996105 t
i chlSab2.chr17            C 0 I 5077
s manLeu1.NW_012101121v1     160107 1 +    273075 t
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      52745 1 -   1829203 t
i colAng1.NW_012115577v1   I 541 C 0
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e macFas5.chr4             29884116 3584 - 170955103 I

a score=57671.000000
s hg38.chr6_GL000254v2_alt  1155026 33 +   4827813 tggaggcattgtgccacctccctagggatctgt
s panTro5.chr6             30113394 33 + 175400573 tggaggcattgtgccacctccctagggatctgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30344080 33 + 173848474 tggaggcattgtgccacctccctagggatctgt
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30506703 33 + 172585720 tggaagcattgtgccccctccctagggatctgt
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     160239 33 -    863181 tggatgcattctgccccctccctggggatctgt
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     160108 33 +    273075 tggaagcattctgccccctccctagggatctgt
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      52746 33 -   1829203 tggaggcattctgctccctccctagggatctgt
i colAng1.NW_012115577v1   C 0 C 0
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e chlSab2.chr17            29320596 5077 -  71996105 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74739424 1810 + 122973662 I

a score=852006.000000
s hg38.chr6_GL000254v2_alt  1155059 398 +   4827813 ggaactttaaacttgagagtga--tgattaagggtatctgatggaagaaatttctcagtagcatag-aattca-ggatttggtctggctgcctgtaatagcctatgtgcatatgtgtgagcaaagaaatgacccaaaactggaactgatatttaaatggggaaatttaatacc-caggaaaattcttagcgga-gctgcagcaacaggacccctgccaggactactaaatggtagagccactggcta-tgtgcaacctcagcctggaaaagccataggcatt-caattttctcccatgacagcagctatatgggttatgttcagcaaagccataaatgtgg-agctgcaaatggcattaggag-cccagcagttgcaccagccactgtgctctggattcaaaatatag
s panTro5.chr6             30113427 398 + 175400573 ggaactttaaacttgagagtga--tgattaagggtatctgatggaagaaatttctcagtagcatag-aattca-ggatttggtctggctgcctgtaatagcctatgtgcatatgtgtgagcaaagaaacgacccaaaactggaactgatatttaaatggggaaatttaatacc-caggacaattcttagcaga-gctgcagcagcaggacccctgccaggactactaaatggtagagccactggcta-tgtgcaacctcagcctggaaaagccataggcatt-caattttctcccatgacagcagctatatgggttatgttcagcaaagccataaatgtgg-agctgcaaatgacattaggag-cccagcagttgcaccagccactgtgctctggattcaaaatatag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30344113 398 + 173848474 ggaactttaaacttgagagtga--tgattaagggtatctgatggaagaaatttctcagtagcatag-aattca-ggatttggtctggctgcctgtaatagcctatgtgcatatgtgtgagcaaagaaacgacccaaaactggaactgatatttaaatggggaaatttaatacc-caggacaattcttagcaga-gctgcagcagcaggacccctgccaggactactaaatggtagagccactggcta-tgtgcaacctcagcctggaaaagccataggcatt-caattttctcccatgacagcagctatatgggttatgttcagcaaagccataaatgtgg-agctgcaaatgacattaggag-cccagcagttgcaccagccactgtgctctggattcaaaatatag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1          0 404 +   2037526 ggaactttaaacttgagagtgaattgattaagggtatctgatggaag-aatttctcagt-gcatagaaattcagggatttggtctggctgcctgtaatagcctatgtgcatatgtgtgagcaaagaaatgaccc-aaactggacctgatatttaaatggggaAATTTTATACCGcaggacaattcttagcggaggctgcagcaacaggacccctgccaggactactaaatggtagagccactggctattatgcaacctcag-ctgtaaaagccataggcattccaattttctcccatgacagcatctatatgggttatgttcagcaaagccataaatgtggaagctgcaaatggcattaggagccccagcagttgcaccagccactgtgctctggattcaaaatatag
i gorGor5.CYUI01015528v1   N 0 C 0
s rheMac8.chr4             30506736 396 + 172585720 ggaacgttgaacctgagagtga--tgattaagggtatctgatggaagaaatttctaagtagcataa-cattca-agatttggcctggctgcttgtaatagcctttgcacatacgtgggagcaaagaaatgaaccaaaactggaactgatatttaaa-ggggaaATTTAATACc-caggacaattcctagtgca-gctgcaggagcaggacccctgccaggactactaaattgtagagccactggcaa-tgtgcaacctcagcctggaaaa-ccataggcatt-caattttcacccatgagagcagctatatgggttatgttcagcaaaaccataaatgtgg-ggctacaaaaggcgttatgag-cccagaacttgaaccagtcaatgtgctcaggattcaaaatatag
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     160272 387 -    863181 ggaactttaaacttgagagtaa--tgattaaggatatctaatgaaagaaatttctaagcagcatag-cattca-agatttggcctggctgcttgtaatagcctatgcacatatgtgtgagcaaag----------aaactagaactgatatttaaa-ggagaaATTTAATACc-caggacaattcctagtgga-gctgcagcagcaggatccctgccaggactactaaatggtagagccactggcaa-tgtgcaacctcagcctggaaaagccataggcatt-caatttttacgcctgagagcagctatatgggttatgttcagcaaaaccataaacgtgg-gcctgcaaatggcattatgag-cccagcacatgcaccagtcagtgtgctcaggattcaaaatatag
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     160141 387 +    273075 ggaactttaaacttgagagtaa--tgattaaggatatctaatgaaagaaatttctaagcagcatag-cattca-agatttggcctggctgcttgtaatagcctatgcacatatgtgtgagcaaag----------aaactggaactgatatttaaa-ggggaaATTTAATACc-cgggacaattcctagtgga-gctgcagcagcaggatccctgccaggactactaaatggtagagccactggcaa-tgtgcaacctcagcctggaaaagccataggcatt-caatttttacgcctgagagcagctatatgggttatgttcagcaaaaccataaacgtgg-gcctgcaaatggcattatgag-cccagcacatgcaccagtcagtgtgctcaggattcaaaatatag
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      52779 396 -   1829203 ggaacttggaacctgcgagtga--tgattaagggtatctgatggaagaaatttctaaatagcataa-cattca-agatatggcctggctgcttgtaatagcctatgcacatatgtgtgagtaaagaaatgacccaaaactggaactgatatttaat-ggggaaATTTAATACc-caggacaattcctagtgga-gttgcaggagcaggacccctgccaggactactaaatggtacagccactggcaa-tgtgcaacctcagcctggaaaagccataggcatt-cagttttcacccatgagagcagctatatgggttatgttcagcaaagccataaatgtgg-gcctacaaatggcgttatgag-cccaggacttgcaccagtcaatgtgctcaggattc-aaatatag
i colAng1.NW_012115577v1   C 0 T 22804
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e chlSab2.chr17            29320596 5077 -  71996105 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74739424 1810 + 122973662 I

a score=321294.000000
s hg38.chr6_GL000254v2_alt  1155457 206 +   4827813 agtcaaaggagattcttttagacctttaag-ttttaatgtctgccatgatgagtttcaatcttatgaggaaactgcattcatttcttttggcccatttatataccttttggaatggaaatgtacaagaaatgtctcttccactgttttattaatattttagatgcaaataacattttttaaaaaaattttacaggctcaa-------agctata
s panTro5.chr6             30113825 206 + 175400573 agtcaaaggagattcttttagacctttaag-ttttaatgtcttccatgatgagtttcaatcttgtgaggaaactgcattcatttcttttggcccatttatataccttttggaatggaaatgtacaagaaatgtctcttccactgttgtattaatattttagatgtaaataacatttttaaaaaaaattttacaggctcaa-------agctata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30344511 206 + 173848474 agtcaaaggagattcttttagacctttaag-ttttaatgtctgccatgatgagtttcaatcttgtgaggaaactgcattcatttcttttggcccatttatataccttttggaatggaaatgtacaagaaatgtctcttccactgttgtattaatattttagatgtaaataacatttttaaaaaaaattttacaggctcaa-------agctata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1        404 205 +   2037526 agtcaaaggagattcttttagacctttaag-ttttaatgtctgccatgatgagtttcaatcttgtgaggaaactgcattcatttcttttggcccatttatataccttttggaatggaaatgtacaagaaatgtctcttccactgttgtattaatattttagatgcaaataaca-ttaaaaaaaaaatttaccaggctcaa-------agctata
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30507132 207 + 172585720 agttaaaggagattattttagagttttaag-ttttaatctctgctatgaggagtttc-agcctgtgagaagactgcattcatttattttggcccatt--tatttcttttggaatggaaatgtataagaaatgtcttttccactgttgtattaatattttagaggtaaataacattttt---taaaattttactggctcaaagcttatagctttg
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     160659 203 -    863181 agtcaaaggagattattttagagctttaagtttttaatgtctgccatgatgagtttcaaacttgtgaggaaactgcattcatttcttttggcccatg--tataccttttggaatggaaatgtgtaagaaatgtctcttccactcttgtattaatattttagaagtaaatactattttt--aaaaaattttataggctcaa-------agcttta
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     160528 203 +    273075 agtcaaaggagattattttagagctttaagtttttaatgtctgccatgatgagtttcaaacttgtgaggaaactgcattcatttcttttggcccatg--tataccttttggaatggaaatatgtaagaaatgtctcttccactcttgtattaatattttagaagtaaatactatttta--aaaaaattttataggctcaa-------agcttta
i manLeu1.NW_012101121v1   C 0 C 0
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e chlSab2.chr17            29320596 5077 -  71996105 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74739424 1810 + 122973662 I

a score=1434771.000000
s hg38.chr6_GL000254v2_alt  1155663 652 +   4827813 agaatttaccttgcgtctcagatgagactctagaattttgagttgatgct-ggaacaacctaacac-atttgggacaattgggagtagattattatattttgcaatgtgagaagaacatgacctttggCTGGCTAGGGAGGGGAtgcaatgatataaacatttatcccctgatacctcatgttaaaatctaacgcccactgt-gggacttggggcctaatggccaccatttgggtcatggtgaccaatcttttatgaatcgagagat-actg--ccctctctcaggaatgaatgaattgttgctctattatttt--ccaagagagctagttgttaaaaagaccctggcaacttcctactctctgtgttcctctgttaccatgtgatctctgcatataccagctcccctttgtcttctgccatgagtggaagcagcctgaggccctcactaaatgcgcaaacatttccagacatcagaatcttgagccacatgaacctcgtttatataaattagtcagtctcagacatttctttatagc-aacacaaaatgg-aaaaagataaccctcgcatcacaggtatgtgtctctggcagctagccaccgttcttaagatatccaggatccactcagccaagagtcttctcatcagtactctaaagaca
s panTro5.chr6             30114031 653 + 175400573 agaatttaccttgagtctcagatgagactctggaattttgagttgatgct-ggaacaacctaatac-atttgggacaattgggagaagattattatattttgcaatgtgagaagaacatgacctttggCTGGCTAGGGAGGGGAtgcaatgatataaacatttatcccctgatacctcatgttaaaatctgacacccactgt-gggacgtggggcctaatggccaccatttgagtcatggtgaccaatcttttatgaatagagagataactg--ccctctctcgggaatgaatgaattgttgctctattatttt--ccaagacagctagttgttaaaaacaccctggcaacttcctactctctctgttcctctgttaccatgtgatctctgcatataccagctcccctttgtcttctgccatgagtggaagcagcctgaggccctcactaaatgcgcaaacatttccagacatcagaatcttgagccacgtgaaccttgtttatataaattagtcagtctcagacatttctttatagc-aacacaaaatgg-aaaaagataaccctcgcatcacaggtatgtgtctctggcagctagccaccgttcttaagatatccaggatccactcagccaagaatcttctcatcagtactctaaagaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30344717 653 + 173848474 agaatttaccttgagtctcagatgagactctggaattttgagttgatgct-ggaacaacctaatac-atttgggacaattgggagaagattattatattttgcaatgtgagaagaacatgacctttggCTGGCTAGGGAGGGGAtgcaatgatataaacatttatcccctgatacctcatgttaaaatctgacacccactgt-gggacgtggggcctaatggccaccatttgagtcatggtgaccaatcttttatgaatagagagataactg--ccctctctcgggaatgaatgaattgttgctctattatttt--ccaagacagctagttgttaaaaagaccctggcaacttcctactctctctgttcctctgttaccatgtgatctctgcatataccagctcccctttgtcttctgccatgagtggaagcagcctgaggccctcactaaatgtgcaaacatttccagacatcagaatcttgagccacgtgaaccttgtttatataaattagtcagtctcagacatttctttatagc-aacacaaaatgg-aaaaagataaccctcgcatcacaggtatgtgtctctggcagctagccaccgttcttaagatatccaggatccactcagccaagaatcttctcatcagtactctaaagaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1        609 647 +   2037526 agaatttaccttgagtctcagatgagactct-gaattttgagttgatgctcggaacaacataacac-atttgggacaatt-ggagaagattattatattttgcaatgtgagaagaacatgacctttggCTGGCT-GGGAGGGGATGCAATGATATAAAC-tttatcccctgatacctcatgttaaaatctgacgcccactgtggggacgtggggcctaatggccaccatttgggtcatggtgaccaatcttttatgaatcgagagat-actg--ccctctctcgggaatgaatgaattgttgctctattattttccccaagagagctagttgttaaaaaga-cctggcaacttcctactctctgtgttcctctgttaccatgtgatctgtg---attaccgctcccctttgtcttctg-catgagtggaagcagcctgaggccctcactaaatgcgcaaacattt-cagacatcagaatcttgagccacatgaaccttgtttatataaattagtcagtctcagacatttctttatagcaaacacaaaatggaAAAAAGATaaccctcgcatcacaggtatgtgtctctggcagctagccaccgttcttaagatatccaggat-cactcagccaagagtcttctcatcagtactctaaagacg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30507339 652 + 172585720 agaacgcaccttgagtctcagatgagactctggaattttgagttgatgct-ggaacaacctaaaataatttgggacaattgggag---attattgtgttttgcaatgtgagaagaacatgagctttggCTGGCTAGTGACAGGAtgcaatgatataagtatttatcccttgatacctcatgttaaaatctgatgcccactgt-gggatgtggggcctaatgggtgtcgttcgggtcatggggacaaattttttatgaacagagagat-actgctctctctctctggagtgaatgaattgttgctctattatttt--ccaagagagctagttgttaaaaagagcctggcaacttcctactctctctgttcctctgttaccatgtgatctctgcacataccagctcccctttgccttctgccgtgagtggaagcagcctgaggccctcactaaatgctcaaacatttccagacatcagaatcctgagacacatgaaccttgtttatgtaaattagtcagtctctgacatttatttatagc-aacacaaaatgg-aataagacaacgttctcatcacaggtatgtgtctctggcagccagcccccattctcaagataactaggatctgctcagccaagaatcttgtcatcagtattctaaagaca
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     160862 647 -    863181 agaacttaccttgaatctcagacgagactctggaattttgagttgatgct-gg-acaacctaacac-atttgggacaattgggagaaaattattgtattttgcaatgtgagaagaacacgagctttggctggctagtgacaggaTGCAGTGATAtaaatatttatcccctgatacctcatgttaaaatctgatgcccattgt-gggatgtggggccttatgggtgtcgtttgggtcatggggaccaattttttatgaatagagagat-actg--ccctctctatggagtgaatgaattgctgctctattatttt--ccatgagaactagttgttaaaaagagcctggcaacttcctactctctctgttcctctgttaccgtgtgatctctgcacataccagctcccctttgccttctgccatgagtggaagcagcctgaggccctcactagatgctcaaacatttccagacatcagaatcctgagccacatgaaccttgtttatataaatt----agtctcagacatttctttacagc-aacacaatatgg-aataagacagcactgtcatcacaggtatgtgtctctggcagccagccccaattctcaagatatccaggatctgctcagccaagagttttctcatcagtactctaaagaca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29325673 646 -  71996105 Agaacttaccttgagtctcagatgagactctggaattttgagttgatgct-ggaacaacctaaaataatttgggacaattgggag---actattgcgttttgcaatatgagaagaatatgagctttggctggctagcgacaggatgcaatgatataagtatttatcccttgatacctcatgttaaaatctgacgcccactgt-gggatgtggggcctaatgggtgccgtttgggtcatggggaccaatcttttatgaacagagagat-actg--ccctctctctggagtgaatgaattttttctctattgtttt--ccaagagaactagttgttaaaaagagcctggcaaattcctactctctctgttcctctgttaccatgtgatctctgcacataccagctcccctttgccttctgccatgagtggaagcagcctgaggccctcactaaatgctcaaacatttccagacatcagaatcctgagccacatgaatcttgtttatataaatt----agtctcagacatttctttatagc-aatacaatatga-aataagacaacgttctcaccacaggtatgtgtctctggcaggcagcccccattctcaaggtaactaggatctgctcagccaagagccctctcatcagtattctaaagaca
i chlSab2.chr17            I 5077 C 0
s manLeu1.NW_012101121v1     160731 647 +    273075 agaacttaccttgaatctcagacgagactctggaattttgagttgatgct-gg-acaacctaacac-atttgggacaattgggagaaaattattgtattttgcaatgtgagaagaacacgagctttggCTGGCTAGTGACAGGATGCAGTGATAtaaatatttatcccctgatacctcatgttaaaatctgatgcccattgt-gggacgtggggccttatgggtggcgtttgggtcatgggaaccaatattttatgaatagagagat-actg--ccctctctatggagtgaatgaattgctgctctattatttt--ccatgagaactagttgttaaaaagagcctggcaacttcctactctctctgttcctctgttaccatgtgatctctgcacataccagctcccctttgccttctgccatgagtggaagcagcctgaggccctcactagatgctcaaacatttccagacatcagaatcctgagccacatgaaccttgtttatataaatt----agtctcagacatttctttacagc-aacacaatatgg-aataagacaGAACTGTCatcacaggtatgtgtctctggcagccagccccaattctcaagatatccaggatctgctcagccaagagttttctcatcagtactctaaagaca
i manLeu1.NW_012101121v1   C 0 C 0
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74739424 1810 + 122973662 I

a score=229631.000000
s hg38.chr6_GL000254v2_alt  1156315 94 +   4827813 ctcttatcactcaagagagtctaaggtttttaggagaaaccagggacaaagactaaatgttTTTGTGATAACTCAGATTGCCCACTTTTCTTTG
s panTro5.chr6             30114684 94 + 175400573 ctcttatcactcaagagagtctaaggtttttaggagaaaccagggacaaagactaaatgttTTTGTGATAACTCAGATTGCCCACTTTTCTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30345370 94 + 173848474 ctcttatcactcaagagagtctaaggtttttaggagaaaccagggacaaagactaaatgttTTTGTGATAACTCAGATTGCCCACTTTTCTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       1256 93 +   2037526 ctcttatcactcaagagagtctaaggtttttaggag-aaccagggacaaagactaaatgttTTTGTGATAACTCAGATTGCCCACTTTTCTTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74741234 94 + 122973662 ctcttatcactcaagagattctaaggtttttaggagaaaccagggacaaagactaaatgttTTTGTTATACCTCAGATTACCCACTTTTCTTTT
i nomLeu3.chr1a            I 1810 I 60401
s rheMac8.chr4             30507991 67 + 172585720 ctcttatcactcaagag--tctaaggtttttaggagaaaccagggacaaagactacatgt-------------------------tTTTCTTTG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     161509 92 -    863181 ctcttgtcactcaagag--tctaaggtttttaggagaaaccagggacaaagactaaatgttTTTGTTATACTTCTGATTACCTGCTTTTCTTTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29326319 67 -  71996105 ctcttatcactcaagag--tctaaggtttttaggagaaaccagggacaaagactacatgt-------------------------tTTTCTTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     161378 92 +    273075 ctcttgtcactcaagag--tctaaggtttttaggagaaaccagggacaaagactaaatgttTTTGTTATACTTCTGATTACCTGCTTTTCTTTG
i manLeu1.NW_012101121v1   C 0 C 0
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e macFas5.chr4             29884116 3584 - 170955103 I

a score=2628956.000000
s hg38.chr6_GL000254v2_alt  1156409 1174 +   4827813 ACCACATATCTTTTACAGGAAAAAGGATTGTAACAGTAAAGAGGTATTGGCATATTATCAGAGTCtcatccattcattcaaaattaggccagtttatcatcctcttgtatgaatatgtctcccagaatgaaatcactcagctttgctgacaacactcaatcttaccaggttccaaaaacaaggatggtctcagggacatacagcttcactcttttaggcatcccgtataattgacctaagtgacaatatcttctcttgctcacaccacctttgaggagttaagctaatattgaatttttctcattatataaccctttgatttattcacttaccctcagccactattcctccctctgtccttttatatcagttgtttccaggtttggg--agtgacattaggtttgtctgctgggctggcctagactgcaggcagcaatagtattctagcatgtcttccctcagtctagtcttgatca-tagagggtaggttatataggtaaggaactagtgggggctatcagaccaccaggctatataactctacttactgttaatcctaactttt-cagatgaaatgaa---------------------TACTTGAGAATTCTTACATAAAGGTGTAAAAATATAGTTATGGTTTTTCGCTTAGGGATAATTCCTGTTTCTGGCACTTTTATTTACATCCCTATTCCTGGTACTATGGCATAACATATGAAAAAATAAATTTGAGGTGaagtgtagtctttattccagcatcctctccccttcagaagaattgtatgtatcgtcgtaacagcatcgtcctgatccatcaggtaaaagagaggatgctacctagtggagttattcttgcagccccactcatgttgacagcgagcacattcatgaagatataaaagccagtccttcatgtttatattgcccaacaattagattggcagtttttagacaaacaatgtttcaattgaccatttcaattttctatcaaa-ttttcccctgaggaggacatgtccctctgcattgttggccgtttgaggctgtaaagtgtgttttcttgtgtaaagaagtgtgactcggcagtccaaattggtgcaacctcttcttttctggtccttgtatagcccttgaagcattgacatctacccctggttgagcatagcccaatccagagtcagtgattttcctgtcaaga
s panTro5.chr6             30114778 1175 + 175400573 ACCACATATCTTTTACAGGAAAAAGGATTGTAACAGTAAAGAGGTATTGGCATATTATCagaatctcatccattcattcaaaattaggccagtttatcatcctcttgtatgaatatgtctcccagaatgaaatcactcagctttgctgacaacactcaatcttaccaggttccaaaaacaagaatggtctcagggacatacggctttactcttttaggcatccagtataattgacctaagtgacaatatcttctcttgctcacaccacctttgaggagttaagctaatattgaatttttctcattatataaccctttgatttattcacttaccctcagccactattcctccctctgtccctttatatcagttgtttccaggtttggg--agtgacattaggtttgtctgctgggctggcctagactgcaggcagcaatagtattctagcatgtcttccctcagtctagtcttgatca-tagagggtaggttatataggtaaggaactagtgggggctatcagaccaccaggctatataactctacttactgttaatcctaacttttccagatgaaatgaa---------------------TACTTGAGAATTCTTACATAAAGGTGTAAAAATACAGTTATGGTTTTTCGCTTAGGGATAATTCCTGTTTCTGGCACTTTTATTTACATCCCTATTCCTGGTACTATGGCATAACATATGAAAAAATAAATTTGAGGTGaagtgtagtctttattccagcatcctctccccttcagaagaattgtatgtatcgtcgtaacagcatcgtcctgatccatcaggtaaaagagaggatgctacctagtggagttattcttgcagccccactcatgttgacagcgagcacattcatgaagatataaaagccagtccttcatgtttatattgcccaacaattagattggcagtttttagacaaacaatgtttcaattgaccatttcaattttctatcaaa-ttttcccctgaggaggacatgtccctctgcattgttggccgtttgaggctgtaaagtgtgttttcttgtgtaaaaaagtgtgactcggcagtccaaattggtgcaacctcttcttttctggttcttgtatagcccttgaagcattgacatctacccctggttgagcatagcccaatccagagtcagtgattttcctgtcaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30345464 1175 + 173848474 ACCACATATCTTTTACAGGAAAAAGGATTGTAACAGTAAAGAGGTATTGGCATATTATCAGAGTCtcatccattcattcaaaattaggccagtttatcatcctcttgtatgaatatgtctcccagaatgaaatcactcagctttgctgacaacactcaatcttaccaggttccaaaaacaagaatggtctcagggacatacggctttactcttttaggcatccagtataattgacctaagtgacaatatcttctcttgctcacaccacctttgaggagttaagctaatattgaatttttctcattatataaccctttgatttattcacttaccctcagccactattcctccctctgtccctttatatcagttgtttccaggtttggg--agtgacattaggtttgtctgctgggctggcctagactgcaggcagcaatagtattctagcatgtcttccctcagtctagtcttgatca-tagagggtaggttatataggtaaggaactagtgggggctatcagaccaccaggctatataactctacttactgttaatcctaacttttccagatgaaatgaa---------------------TACTTGAGAATTCTTACATAAAGGTGTAAAAATACAGTTATGGTTTTTCGCTTAGGGATAATTCCTGTTTCTGGCACTTTTATTTACATCCCTATTCCTGGTACTATGGCATAACATATGAAAAAATAAATTTGAGGTGaagtgtagtctttattccagcatcctctccccttcagaagaattgtatgtatcgttgtaacagcatcgtcctgatccatcaggtaaaagagaggatgctacctagtggagttattcttgcagccccactcatgttgacagcgagcacattcatgaagatataaaagccagtccttcatgtttatattgcccaacaattagattggcagtttttagacaaacaatgtttcaattgaccatttcaattttctatcaaa-ttttcccctgaggaggacatgtccctctgcattgttggccgtttgaggctgtaaagtgtgttttcttgtgtaaaaaagtgtgactctgcagtccaaattggtgcaacctcttcttttctggttcttgtatagcccttgaagcattgacatctacccctggttgagcatagcccaatccagagtcagtgattttcctgtcaaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       1349 1168 +   2037526 ACCACATATCTTTTACAGGAAAAAGGATTGTAACAGTAAAGAGGTACT-GCATATTATCAGAGTCtcatccattcattcaaaattaggccagtttatcatcctcttgtat-aatatgtctcccagaatgaaatcactcagctttgctgacaacactcaatcttaccaggttccaaaaacaagaatggtctcagggacatacagcttcactcttttaggcatccagtataattgatctaagtgacaatatcttctcttgctcacaccacctttgaggagttaagctaatattgaatttttctcattatataaccctttgatttattcacttaccctcagccactattcctccctctgtccctttatatcagttgtttccaggtttggggaagtgacattaggtttgtctgctgggctggcctagactgcaggcagcaatagtattctagcatgtcttccctcagtct-gtcttgatcattagagggtaggttatataggtaaggaactagtgggggctatcagaccaccaggctatataactctacttactgttaatcctaacttttccagatgaaatgaa---------------------TACTTGAGAATTCTTACATAAAGGTGTAAAAATATAGTTACGGTTTTTCGCTTAGGGATAATTCCTGTTTCTGGCAC-TTTATTTACATCCCTATT-CTGGTACTATGGCATAA-ATATGGAAAAAATAATTTGAGGTGaagtgtagtctttattccagcatcctctcctcttcagaagaattgtatgtatcgtcgtaacagcatcgtcctgatccatcaggtaaaagagaggatgctacctagtggagttattcttgcagccccactcatgttgacagcgagcacattcatgaagatataaaagccagtccttcatgtttatattgcccaac-attagattggcagtttttagacaaacaatgtttcaattgaccatttcag-tttctatcaaa-ttttcccctgaggaggacatgtccctctgcattgttggccgtttgaggctgtaaagtgtgttttcttgtgtaaagaagtgtgactcggcagtcc-aattggtgcagcctcttcttttctggttcttgtatag-ccttgaagcattgacatctacccctggttgagcatagcccaatccagagtcagtgattttcctgtcaaga
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30508058 1195 + 172585720 ACCACATATCTTTTATAG-GAAAAGGATTATAACAGTAAAGACATATTGGCATATTATCAGAGTCtcattcagtcattcaaaattagaccagtttatcatcctcttgtatgaatatgtctcccagaatgaagtcattcagctttgcagacaccactcagtcttaccgggttccaaaaacatgaatggtctcagggacatatggcttctcccttttaggcatccagtataattgaactaagagacagtatcttctcttgctcacactacttttgaggagataagctaatattgaattttcctcactacataaccctttgatttattcacttaccctcagccactattcctctttctgtccgtttatatcagtctttttaggttttgga--agtgacatttggtttggctgctgtgctggtctagacttcaggcagcaatagtattctagcatatcttccctcagtctactcttgatca-tagagggtaggttacatagggaaggaactagttgggactattggaccaccaggctacatagctctacttacagttaaacctgactttgccagatgaaatgaaggcatagcacaatccttgagttgcttggggattcttacatacaggtgtaaaaatacagttatggtttttggcctagggataattcctgtttctggcacttttatttacatccctattcctagtaccacggcatcacatatgaaaaaagaaattttaggtgaagtgtagtcattactccagcatcttctcccattaggaagaa-tgtatgtatagtcataatagcatcatcctgatccatcaggacaaagagaggaagctgcctagtggagtcactcttgcagccccacccatgttgacagtgagcacatttatggagatataaaagccagtccttcgtgtttatattgctcaacaattatattggcagtttttagacaatcagtgtttcaattgaccatttcaattttctatcaaagttttctcctgaggagggcatctccctgtgcattgttggctgtttgaggctataaagtgtgttttcctgtgtaaagaaatgtgacacagcagtccaaattggtgcaatttcttcttttcttgtttttctagggcccttgaagcattgacatctacctctgattgagcatagcccaatccaggatcagtgactttcctgtcaaga
i rheMac8.chr4             C 0 N 0
s cerAty1.NW_012002535v1     161601 1174 -    863181 ACTACATATCTTTTATAGAAAAAAGGATTATAACAGTAAAGAGGTATTGGCATATTATCAGAGTCtcattcagtcattcaaaattagaacagttcaccatcctcttgtgtgaatatgtctcccagaatgacatcactc-gtcacgcagacaccactcaatcttaccaggttccaaaaacaagaatggtctcagggacatatggcttcacacttttaggcatgcagtataattgacctaagagaaaatatcttgtcttgctcacaccacctttgaggagttaagctaatattgaattttcctcattacataaccctttgacttattcacttacccctagccactattcctccctttatccctttttattagtcttttccaggtttgaa--agtgacatttggtttgtctgctgtgctggtctagactgcaggcagcagtagtattctagaatgtcttccctaagtctactcttgatca-tagagggtaggttacataggtaaggaactagtgggggctatctgaccaccaggctatgtagctctacttactgttaatactaactttgccagatgaaatgaa---------------------tgcTTGAGAACTCTTACATAAAGGTGTAAAAATATAGTTATGGTTTTTTGCTTAGGGATAATTCCTATTTCTGGCACTTTTATTTACATCCCTATTCCTGATACCACGGCATCACATATgaaaaaagaaatttgaggtgaagtgtagtctttattccagcatcctctccccttaggaagaattgtatgtatagtcataacagcatcatcctgatccatcaggacaaagagaggaagctacctagtggagtcactcttgcagccctacccatgttgacagtgagcacattcatggagatataaaagccagtccttcatgtttatatt-cccaacaattattttggtaatttttagacaaccaatgttttaattgactatttcaattttctatcaaagttttcttctgaggtggacatctctcagtgcattgttggcagtttgagactgtaaagtatgttttcttgtgtaaagaaatggaactcagctgtccagatttgtccaatctctccttttctggttctttcatagcccttgaagtactgacatctttccctggttgagcatagcacaatccagagtcagtgactttcctgtcaaga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29326386 1192 -  71996105 ACCACATATCTTTTATAG-GAAAAGGATTATAACAGTAATGATGTATTGACATATTATCAGAGTttcattcagtcatttataactaggtcagtttatcatcctcttgtatgaatatgtctcccagaatgaagtcattcagctttgcagacaccactcaatcttaccgggttccaaaaacaggaatggtctcagggacatacggcttcacccttttaggcatccagtataattgaacgaagagataatatcttctcttgctcacactacttttgaggagttaagctaatattgaatttttctcattacataaccctttgatttattcacttaccctcagccactattcctctttctgtccctttatgtcagtcttttccagttttgga--agtgacattaggtttggctgctgtgctggtctagactgcaggcagcaatagtattctagtatgtcttccctcagtctactcttgatca-tagagggtaggttacatagggaaggaactagttgggactattggaccaccaggctacatagctctacttactgttaatcctgactttgccagatgaaatgaaggcatagcataatccttgagttgcttggggattcttatatacaggtgtaaaaatatagttatggtttttggcttagggataattcctgtttctggcacttttatttacatccctattcctagtaccatggcatcacatatgaaaaaagaaatttgaggtgaagtgtagtcattactgcagcatcctctccacttaggaagaattgtatgtatagtcataacagcatcgtcctgatccatcaggacaaagagaggaagctacctactggagtcacacttgcagctccacccatgttgacagtgagcgcattcatggagatataaaagccagtccttcgtgtttatattgcccaacaattatattggcagtttttagataatcaatgtttcaattgaccatttcaattttctatcaaagttttctcctgaggaggacatctccctgtgcattgttggctgtttgaggctgt-aagtgtgttttcttgtgtaaagaaatgcgatatggcagtccaaattggtgtaatct---cttttcttgttcttttacagcccttgaagaattgacatcttcccctgattgagcatagcccaatccagagtcagtgactttcctgtcaaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     161470 1174 +    273075 ACTACATATCTTTTATAGAAAAAAGGATTATAACAGTAAAGAGGTATTGGCATATTATCAGAGTCtcattcagtcattcaaaattagaacagttcaccatcctcttgtgtgaatatgtctcccagaatgacatcactcatc-acgcagacaccactcaatcttaccaggttccaaaaacaagaatggtctcagggacatatggcttcacacttttaggcatgcagtataattgacctaagagaaaatatcttgtcttgctcacaccacctttgaggagttaagctaatattgaattttcctcattacataaccctttgacttattcacttacccctagccactattcctccctttatccctttttattagtcttttccaggtttgga--agtgacatttggtttgtctgctgtgctggtctagactgcaggcagcagtagtattctagaatgtcttccctaagtctactcttgatca-tagagggtaggttacataggtaaggaactagtgggggctgtctgaccaccaggccatgtagctctacttactgttaatactaactttgccagatgaaatgaa---------------------tgcTTGAGAACTCTTACATAAAGGTGTAAAAATATAGTTATGGTTTTTTGCTTAGGGATAATTCCTATTTCTGGCACTTCTATTTACATCCCTATTCCTGATACCACGGCATCACATATgaaaaaagaaatttgaggtgaagtgtagtctttattccagcatcctctccccttaggaagaattgtatgtatagtcataacagcatcatcctgatccatcaggacaaagagaggaagctacctagtggagtcactcttgcagccctacccatgttgacagtgagcacattcatggagatataaaagccagtccttcatgtttatatt-cccaacaattattttggtaatttttagacaaccaatgttttaattgactatttcaattttctatcaaagttttcttctgaggtggacatctctcagtgcattgttggcagtttgagactgtaaagtatgttttcttgtgtaaagaaatggaactcagctgtccagatttgtccaatctctccttttctggttctttcatagcccttgaagtactgacatctttccctggttgagcatagcacaatccagagtcagtgactttcctgtcaaga
i manLeu1.NW_012101121v1   C 0 C 0
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=689780.000000
s hg38.chr6_GL000254v2_alt  1157583 312 +   4827813 tccattggcagctcctttggggttgctggcatcattctggcttgccaggtat-ta-tgatcaaagccttcccact-agagaatctgtcacatctccatctgctgcctctgtctgttttCTtgaccaacagtgaaaaaagagattatgag-aaataagataaattaccaaaattgtgaacaaa--agagattatcactaatgacccttaggaagttaaaaaacattataagtgaatactctgaaaaacctgaagccaataagttagaccacttagataaaaaggaccaattcgtgcagagatagaaattgccaaaactg
s panTro5.chr6             30115953 314 + 175400573 tccattggcagctcctttggggttgctggcatcattctggcttgccaggtat-ta-tgatcaaagccttcccact-agagaatctgtcacatctccatctgctgcctctgtctgttttCTtgaccaacagtgaaaaaagagattatgag-aaataagataaattaccaaaattgtgaacaaaagagagattatcactaatgacccttaggaagttaaaaaacattataagtgaatactctgaaaaacctgaagccaataagttagaccacttagataaaaaggaccaattcgtgcagagatagaaattgccaaaactg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30346639 314 + 173848474 tccattggcagctcctttggggttgctggcatcattctggcttgccaggtat-ta-tgatcaaagccttcccact-agagaatctgtcacatctccatctgctgcctctgtctgttttCTtgaccaacagtgaaaaaagagattatgag-aaataagataaattaccaaaattgtgaacaaaagagagattatcactaatgacccttaggaagttaaaaaacattataagtgaatactctgaaaaacctgaagccaataagttagaccacttagataaaaaggaccaattcgtgcagagatagaaattgccaaaactg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       2517 311 +   2037526 tccattggcagctcctttggggttgctggcatcattctggcttgccaggtat-tattgatcaaagccttcccactgagagaatctgtcacatctccatctgctgcctctgtctgttttCTtgaccaacagtggaaaaagagattatgagaaaataagataaattaccaaaattgtgaa-aaaagagagattatcactaatgaaccttaggaagttaaaaaacattataagtg-atactctgaaaaacc-gaagccaataagttagaccacttagat-aaaaggaccaattcgtgca-agatag-aattgccaaaactg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30642070 315 + 172585720 tccattggcagttcctttggggttgctggcaccagtctggcttgccagctgtaca-agatcaaagccttcccact-agagaatctgtcacagagccatctgctgcctctgtctgttttcttgaccaacagTCAAAATAGAGATTATgag-aaatgagataaattaccaaaattgtgaacaaaagagagattatcactaatgacccttaggaagttaaaaagcattataagtgaatagtctgaaaaatctggagccaacgagttagaccatttagatagaatggacagattcatacaaagatagaaattgccaaaactg
i rheMac8.chr4             N 0 N 0
s cerAty1.NW_012002535v1     162775 315 -    863181 tccattggcagttcctttgggattgctggcatcggtctggcttgccagctatgta-tgatcaaagccttcccact-agggactctgtcacagagccatctgctgcctctgcctgttttcttgaccaaccgtcaaaacagAGATTATgag-aaatgagataaattagcaaaattgtgaacaaaagagagattattactaatgatccttaggaagttaaaaagcattgtaagtgaacactctgaaaaacctgaagccaataagttagatcacttagataaaaaggacggattattagaaagatagaaactgccaaaactg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29327578 314 -  71996105 tccactggcagttcctttggggttgctggcaccagtctggcttgccagctatgta-tgatcaaagccttcccact-agagaatctgtcacagagtcatctgctgcctctgtctgttttcttgaccaacagTCAAAACAGAGATTATgag-aaatgagataaattaccaaaattgtgaacaaaagagagattatcactaatgacccttaggaagttaaaaagcattataagtgaatagtctgaaaaatctggaggcaacaagttagaccatttagatagaatggacagattcatc-aaagatagaaattgccaaaactg
i chlSab2.chr17            C 0 I 1449
s manLeu1.NW_012101121v1     162644 315 +    273075 tccattggcagttcctttgggattgctggcatcggtctggcttgccagctatgta-tgatcaaagccttcccact-agggactctgtcacagagccatctgctgcctctgcctgttttcttgaccaaccgtcaaaacagAGATTATgag-aaatgagataaattaccaaaattgtgaacaaaagagagattattactaatgatccttaggaagttaaaaagcattgtaagtgaacactctgaaaaacctgaagccaataagttagatcacttagataaaaaggacagattattagaaagatagaaactgccaaaactg
i manLeu1.NW_012101121v1   C 0 C 0
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=1368282.000000
s hg38.chr6_GL000254v2_alt  1157895 1092 +   4827813 acc-caaattaactggaaaacctgaagagaactgtgaactaagtcagaaattgaaaaaccttctcaaaaagaaatgccaaagcccagatatcttcactggtgaattctatcaaatattttgaaagctctttcagacaagaagagaggagggaagactttccagcccatttacagaactggca-ttaccctcatatcaaagtcacagcaagactcacaggaaaagagtgccatacaccagtgtcaccaataaacataaatgaaaacatccttaacaaacattggcagataatacaaagccacataaaaaaggattacactccatgaccaatgggattcatcccaggaacatatggttggattaacatttgaaaatcaattcatggaatgcactgtattaatggaaaaaaagacataattatctcaaaagatgcagaagaaacagttgacaaaaatgttaacatcactcatgttcataagtttcaacaaaataggaatggaggagaccttcttcactctgataaagcgcatctataaaaaacccacagctaaaatcaaacttaatgaagaaagactgaagactgaatgcttttctcctaagatggggatcaatgcaaggatgtccaatcccaccacttttatttaatattatactggagattgtagccagtgcaataaggcagaaaattaaaaattaaaggcatccagataaaaaggaaaacatacaattctattcacagataacatgaccctgtctgtagaattcacaagcagataaaaactggct-------agcactaataaatgaatccagaagggcccataggatatcaaatcaatataaaaattaattattaacatatttctctatagaagcaatgaaaatctcaactttcctatcacagtagttaccagaagagcgaaataggaataaatttaggaagacagcagtgtttgttcactgaaaat-aaaaaaacattcctcagagaaattaaaggtctaaataaatggagagatgcgagttggaaagctcgataatactgttaagatggcaattctcccccagtagatctataggttcaacacaatccctatcaaaatc
s panTro5.chr6             30116267 1092 + 175400573 acc-caaattaactggaaaacctgaagagaactgtgaactaagtcagaaattgaaaaaccttctcacaaagaaatgccaaagcccagatatcttcactggtgaattctatcaaatattttgaaagctatttcagacaagaagagaggagggaagactttccagcccatttacagaactggca-ttaccctcatatcaaagtcacagcaagactcacaggaaaagagtgccatacaccagtgtcaccaataaacataaatgaaaacatccttaacaaacattggcagataatacaaagccacataaaaaaggattacactccatgaccaatgggattcatcccaggaacatatggttggattaacatttgaaaatcaattcatggaatgcactgtattaatggaaaaaaagacataattatctcaaaagatgcagaagaaacagttgacaaaaatgttaacatcacttatgttcataagtttcaacaaaataggaatggaggagaccttcttcactctgataaagggcatctataaaaaacccacagctaaaatcaaacttaatgaagaaagactgaagactgaatgcttttctcctaagatggggatcaatgcaaggatgtccaatcccaccacttttatttaatattatactggagattgtagccagtgcaataaggcagaaaattaaaaattaaaggcatccagataaaaaggaaaacatacaattctattcacagataacatgaccctgtctgtagaattcacaagcagataaaaactggct-------agcactaataaatgaatccagaagggcccataggatatcaaatcaatataaaaattaattattaacatatttctctatagaagcaatgaaaatctcaactttcctatcacagtagttaccagaagagcgaaataggaataaatttaggaagacagcagtgtttgttcactgaaaat-aaaaaaacattcctcagagaaattaaaggtctaaataaatggagagatgcgagttggaaagctcgataatactgttaagatggcaattctcccccagtagatctataggttcaacacaatccctatcaaaatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30346953 1092 + 173848474 acc-caaattaactggaaaacctgaagagaactgtgaactaagtcagaaattgaaaaaccttctcacaaagaaatgccaaagcccagatatcttcactggtgaattctatcaaatattttgaaagctctttcagaaaagaagagaggagggaagactttccagcccatttacagaactggca-ttaccctcatatcaaagtcacagcaagactcacaggaaaagagtgccatacaccagtgtcaccaataaacataaatgaaaacatccttaacaaacattggcagataatacaaagccacataaaaaaggattacactccatgaccaatgggattcatcccaggaacatatggttggattaacatttgaaaatcaattcatggaatgcactgtagtaatggaaaaaaagacataattatctcaaaagatgcagaagaaacagttgacaaaaatgttaacatcacttatgttcataagtttcaacaaaataggaatggaggagaccttcttcactctgataaagggcatctataaaaaacccacagctaaaatcaaacttaatgaagaaagactgaagactgaatgcttttctcctaagatggggatcaatgcaaggatgtccaatcccaccacttttatttaatattatactggagattgtagccagtgcaataaggcagaaaattaaaaattaaaggcatccagataaaaaggaaaacatacaattctattcacagataacatgaccctgtctgtagaattcacaagcagataaaaactggct-------agcactaataaatgaatccagaagggcccataggatatcaaatcaatataaaaattaattattaacatatttctctatagaagcaatgaaaatctcaactttcctatcacagtagttaccagaagagcgaaataggaataaatttaggaagacagcagtgtttgttcactgaaaat-aaaaaaacattcctcagagaaattaaaggtctaaataaatggagagatgcgagttggaaagctcgataatactgttaagatggcaattctcccccagtagatctataggttcaacacaatccctatcaaaatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       2828 1077 +   2037526 acc-caatttaactggaaaacctgaagagaactgtgaactaagtcagaaattgaaaacccatctcaaaaag-aatgcc-aagcccagatatcttcactggtgaattctatcaaatattttgaaagctctttcagacaagaagagaggagggaagactttccagcccatttacagaactggcatttaccctcatat-aaagtcacagcaagactcacagg-aaagagtgccata-accagtgtcaccaat-aacataaatgaaaacatccttaacaaacattggcagataatacaaagccacat-aaaaaggattacactccatgaccaatgggattcatcccaagaacatatggttggattaacatttgaaaatcaattcatggaatgcactgtatt-atggaaaaaaagacataattatttcaaaagatgcagaagaaacagttgacgcaaatgttaacatcactcatgttcat-agtttcaacaaaataggaatggaggaga-cttcttcactctgataaagggcgtctataaaaaacccacagctaaaatcaaacttaatgaagaaagactgaagactgaatgcttttctcctaagatggggatc-atgcaaggatgtccaat-ccaccacttttatttaatattatactggagattgtagccagtgcaataaggcagaaaattaaaaattaaaggcatccagat-aaaaggaaaacatacaattctattcacagataacatgaccctgtctgtagaattcacaagcagataaaaactggct-------agcactaataaatgaatccagaagggcccataggatatcaaatcaatat-aaaattaattattaacata-ttccctatagaagcaatgaaaatctcaactttcctatcacagtagttatcagaagagtgaaataggaataaatttaggaagacagcagtgtttgttcactgaaaat--aaaaaacattcctcagagaaattaaaggtctaaataaatggagagatgcgagttggaaagctcgataatactgttaagatggcaattctccccaagtagatctataggttcaacacaatccctatcaaaatc
i gorGor5.CYUI01015528v1   C 0 C 0
s cerAty1.NW_012002535v1     163090 1098 -    863181 actaaaaaataaccagaaaacctgaagagaactgtacactaagttagtaatttaaaaaccttctcaaaaagaaatgccaaagcccggatatctgcgctggtgaattctatcaactattttgaaagctctttcagacaagaagagtggagggaagactttccagcgcatttacagaactggca-ttaccctcatatcaaagtcacagcaagactcacaggaaaagaataccacagaccagtatcaccaataaacataagtgaaaacatccttagcaaacattggcagatgatacaacaccacataaaaaggaattacagtccatgaccaatgggattcatcccaggaatataaggttggattaacatttgaaaatcaactcatggaatgcactgtattaatgaaataaaagacaaaattatctcaaatgatgcagaagaaacagttgacaaaaatgttaacaccacttatgttcataagtttcaacaaaacaggaatggaggggaccttcctcactctgataaagggcatctgtaaaaaacccacagctaaaatcaagtttaatgaagaaagattgaagactgaacgc-cttctcctaagatggggatcaatgcaaggatgtccaatcccatcacttctatttaacattgtactggagattgtagccagtgcaataaggcagaaaattaaaaattaaaggcatccagataaaaaggaaaacataaaactctattcacagataacatgaccttgtctgtagaattcacaagcagataaaagcctgctagcactaagcactaagaaataaatccagaaggccccataaggtatcaaatcaatat-aaaattaattattaacatatttatctatacgagcaatgaaaatctcaactttcctatcacactagttacaaaaagagcaaaataggaataaatttaggaagagagcagtgtttgttcactgaaaat-aaaaaaagattcctgagagaaattaaaggtctaaataaatggagagatgcgagttggaaagctcaataatgctgttaagatggcagttctcccgcagtagatctataggttgaacacaatccctatcaaaatc
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     162959 1099 +    273075 actaaaaaataaccagaaaacctgaagagaactgtacactaagttagtaatttaaaaaccttctcaaaaagaaatgccaaagcccggatatcttcactggtgaattctatcaactattttgaaagctctttcagacaagaagagtggagggaagactttccagctcatttacagaactggca-ttaccctcatatcaaagtcacagcaagactcacaggaaaagaataccacagaccagtatcaccaataaacataagtgaaaacatccttagcaaacattggcagatgatacaacaccacataaaaaggaattacactccatgaccaatgggattcatcccaggaatataaggttggattaacatttgaaaatcaactcatggaatgcactgtattaatgaaataaaagacaaaattatctcaaatgatgcagaagaaacagttgacaaaaatgttaacaccacttatgttcataagtttcaacaaaacaggaatggaggggaccttcctcactctgataaagggcatctgtaaaaaacccacagctaaaatcaagtttaatgaagaaagattgaagactgaacgc-cttctcctaagatggggatcaatgcaaggatgtccaatcccatcacttctatttaacattgtactggagattgtagccagtgcaataaggcagaaaattaaaaattaaaggcatccagataaaaaggaaaacataaaactctattcacagataacatgacctcgtctgtagaattcacaagcagataaaagcctgctagcactaagcactaagaaataaatccagaaggccccataaggtatcaaatcaatat-aaaattaattattaacatatttatctatacgagcaatgaaaatctcaactttcctatcacactagttacaaaaagagcaaaataggaataaatttaggaagagagcagtgtttgttcactgaaaataaaaaaaagattactgagagaaattaaaagtctaaataaatggagagatgcgagttggaaagctcaataatgctgttaagatggcagttctcccgcagtagatctataggttcaacacaatccctatcaaaatc
i manLeu1.NW_012101121v1   C 0 M 505
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e chlSab2.chr17            29327892 1449 -  71996105 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=29747.000000
s hg38.chr6_GL000254v2_alt  1158987 34 +   4827813 ccagcagggattttatagaaaattgacaaaataa
s panTro5.chr6             30117359 34 + 175400573 ccagcagggattttatagaaaattgacaaaatag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30348045 34 + 173848474 ccagcagggattttatagaaaattgacaaaatag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       3905 34 +   2037526 ccagcagggattttatagaaaattgacaaaatag
i gorGor5.CYUI01015528v1   C 0 C 0
s cerAty1.NW_012002535v1     164188 34 -    863181 gcagcagggattttatagaaaattgacaagataa
i cerAty1.NW_012002535v1   C 0 I 585
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     164058 505 +    273075 M
e chlSab2.chr17            29327892 1449 -  71996105 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=155630.000000
s hg38.chr6_GL000254v2_alt  1159021 293 +   4827813 gccgggcgcggtggctcatgccggtaatcccagcactttgggaggctgaggcaggcggatcatgaggtcaggagatccagaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaaactagccgggcgtggtggcgggctcctcgggaggctgaggcagaaaaatggcatgaacccggtaggcggaggttgcagtgagcggagatcatgccactgcactccagcctgggtgacagagcgagactccgtctcaaaaaaaaaaaaaaaagaaaaaaagaaa
s panTro5.chr6             30117393 291 + 175400573 gccgggcgcggtggctcatgccggtaatcccagcactttgggaggctgaggcgggcggatcatgaggtcaggagatccagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcaggctcctcgggaggctgaggcagaaaaatggcatgaacccggtaggcggaggttgcagtgagcggagatcatgccactgcactccagcctgggtgacagagcgagactccgtctc--aaaaaaaaaaaaaagaaaaaaaggaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30348079 289 + 173848474 gccgggcgcggtggctcatgccggtaatcccagcactttgggaggctgaggcgggcggatcatgaggtcaggagatccagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcaggctcctcgggaggctgaggcagaaaaatggcatgaacccggtaggcggaggttgcagtgagcggagatcatgccactgcactccagcctgggtgacagagcgagactccgtctc----aaaaaaaaaaaagaaaaaaaggaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       3939 288 +   2037526 gccgggcgcggtggctcatgccggtaatcccagcactttgggaggctgaggcgggcggatcatgaggtcaggagatccagaccatcctggctaacacggtgaaa-cccgtctctactaaaaatac-aaaaattagccgggcgtggtggcgggct-ctcgggaggctgaggcagaaaaatggcatgaacccggtaggcggaggttgcagtgagcgaagatcgtgccactgcactccagcctgggtgacagagcgagactccgtctc--aaaaaaaaaaaaagaagaaaaaagaa
i gorGor5.CYUI01015528v1   C 0 C 0
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     164058 505 +    273075 M
e chlSab2.chr17            29327892 1449 -  71996105 I
e cerAty1.NW_012002535v1     164222 585 -    863181 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=343535.000000
s hg38.chr6_GL000254v2_alt  1159314 296 +   4827813 agaaaattgacaaaataatcctaaaaatgtatattaaaatgcagaggatgcagaa-gggccaacacaaatttgaaaa--------aaaaaatggaatgtcatatgaaactacaataatccagacagtgtgaaactgagagacatagagatcaat----------gaacagaagtgagaatctagaaagatattcttac---------tttctttgtcaattgattttcaatgaagttgcataggtaacacaatgttacatttaacaccatataaaatatcagctcagacaaattagagacctaaacagctaaaatttatgagtt
s panTro5.chr6             30117684 295 + 175400573 agaaaattgacaaaataatcctaaaaatgtatattaaaatgcagaggatgcagaa-gggccaacacaaatttg-aaa--------aaaaaatggaatgtcatatgaaactacaataatccagacagtgtgaaactgagagacatagagatcaat----------gaacagaagtgagaatctagaaagacattcttac---------tttttttgtcaattgattttcaacgaagttgcataggtaacacaatgttacatttaacactatataaaatatcagctcaaacaaattagagacctaaacagctaaaatttatgagtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30348368 296 + 173848474 agaaaattgacaaaataatcctaaaaatgtatattaaaatgcagaggatgcagaa-gggccaacacaaatttagaaa--------aaaaaatggaatgtcatatgaaactacaataatccagacagtgtgaaactgagagacatagagatcaat----------gaacagaagtgagaatctagaaagacattcttac---------tttttttgtcaattgattttcaacgaagttgcataggtaacacaatgttacatttaacactatataaaatatcagctcaaacaaattagagacctaaacagctaaaatttatgagtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       4227 292 +   2037526 aagaaattgac-aaataatcct-aaaatgtatattaaaatgcagaggatgcagaaggggccaacac-aatttgaaaa--------aaaaaatggaatgtcatatgaaactacaataatccagacagtgtg-aactgagagacatagagatcaat----------gaacagaagtgagaatctagaaagatattcttac---------tttttttgtcaattgattttcaatgaagttgcataggtaacacaatgttacatttaacaccatataaaatatcagctcaaac-aattagagacctaaacagctaaaatttatgagtt
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30510548 316 + 172585720 agaaaactgacaaaataagcctaaaaatgtatatgaaaatgcaagggacacagaa-gtgccaacacaaatttgaacaa-------aaaaaacggaatgtcatataaaactataaaaatctggacagtatggaactgagagacatagagatcaatgaacagaaaggaacagaagtgaaaatctagaaagaccttcttacaaatttttttttttttgtcaattgattttcaatgaagttgcataggtaattcaatgtgacacttaacaccatataaaatatcagctccaacaaattagagacctatagagctaaaatttatgagtt
i rheMac8.chr4             N 0 C 0
s chlSab2.chr17            29329341 317 -  71996105 agaaaattgacaaaataagcctaaaaacgtatatgaaaatgcagaggatgcagaa-gagccaacacaaatttgaaaaaaaaacccaaaaaacggaatgtcatgtaaaactataaaaatccaaacagtatgaaactgagagacatagagatcaatgaacagaaatgaacagaagtgaaaatctagaaagacattcttaca------tttttttttgtcaatcgattttcaatgaagttgcataggtaatgcaatgtgacacttaacaccatataaaatatcagctccaacaaattagagacctatagagctaaaatttatgagtt
i chlSab2.chr17            I 1449 C 0
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     164058 505 +    273075 M
e cerAty1.NW_012002535v1     164222 585 -    863181 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=48991.000000
s hg38.chr6_GL000254v2_alt  1159610 27 +   4827813 aaaactataaaatttctaaaagaaaac
s panTro5.chr6             30117979 27 + 175400573 aaaactatgaaatttctaaaagaaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30348664 27 + 173848474 aaaactatgaaatttctaaaagaaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       4519 27 +   2037526 aaaactataaaatttctaaaagaaaat
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30510864 27 + 172585720 aaaactataaaatttctaaaagaaaat
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     164807 27 -    863181 aaaactataaaatttctaaaagaaaat
i cerAty1.NW_012002535v1   I 585 C 0
s chlSab2.chr17            29329658 27 -  71996105 aaaactataaaatttctaaacgaaaat
i chlSab2.chr17            C 0 C 0
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     164058 505 +    273075 M
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=2721770.000000
s hg38.chr6_GL000254v2_alt  1159637 1323 +   4827813 acaggagaaaatttttattactttgggtagttaggcaaaagattcttagat-aaaataccaaaa-gcatgatctacaaat----------------aaaaaaaaaagagagagaga-aattgggcttagttaaaatttaaaacttgagtgctccaaaaga----c---attgagagaatgagaagacaagccatagacagggagaaaatatttcacaatttatcacaaattacatttgtgttgaagaacatgtttccagaataatgtggcaagttcttaaactcaatgtgtaagaagatgagcaactcaactgaaaatgagcaaaAcacacaaatatgctcaactgacatttacaaaagcacaaacacaattcaatgaaggaaggagagctttcccaacaaatggtgctggagcaactggacaaccacagtggaaaaaaaataggctgagcccaaacctcacgctttatac-----------aaaaaaaaaaaaactcaaaatgaatcacaggctttaatgtaaaacacaacacACAGTTaaaattacaaacattgagccaggtgtggtgtcacaggcctgtactctcacctactcaggagactgaggtgggaggatcccttgagcccaggagttcaaggcCAGCCTAGGCAAGA-----TTTTTTTTTaaataaataacaaatacattaaaaaa-ttaaaattacaaatcttttaacaaaaagccatcagaactaagactagacaaagagttcttacacataacaccaaaagtatgatctgtaaaagaaaaagttactaaactggatcttatcaaaatt-aaaactgttgctctgtgagagacctatgaagagcataaaaagacaagctacagaatgagagaagatatttgcaaaccacatattcaataaagacttgcattcacaatatatgaagaaatgtaaaaactcaacagt-aaaaatgaaatccaaataaacaataggcaatgagcaagacatgaacagacgtttcactgaagaggataaacaccaggctaacaaacagatgaaaagacactcaacatcactatccagtagg-aaaatacaaatcaaaactgcagtgatgagaatggctgaaatacaaaataaaggtagcaacagatgctggcaaggttacagagaaactggatcattc--atattgctggtaggaatggattttaaaatggtacagccactctggaaatggatattgcagttttcttcaaactgaacatgcaatttaccatatgactagaaattgccctcctaggcacttatttcaaacaagggaaaactttatgttcatgaaaaacctgtatacaaatactcttgcagctttattcataatac
s panTro5.chr6             30118006 1309 + 175400573 acaggagaaaatttttgttactttgggtagttaggcaaaagattcttagat-aaaataccaaaa-gcatgatc--caaat------------------aaaaaaaagagagagaga-aattgggcttagttaaaatttaaaacttgagtgctccaaaaga----c---attgagagaatgagaagacaagccatagacagggagaaaatatttcacaatttatcacaaattacatttgtgttgaagaacatgtttccagaataatgtggcaagttcttaaactcaatatgtaagaagatgagcaattcaactgaaaatgagcaaaacacactaatatgctcaactgacatttacaaaagcacaaaaacaattcaatgaaggaaggagagctttcccaacaaacggtgctggagcaactggacaaccacagtggaaaaaaaataagctgagcccaaacctcacgctttatacaaaaaaaaaaaaaaaaaaaaaaaactcaaaatgaatcacaggctttaatgtaa-----aacACACAGTTaaaattacaaacattgagccaggtgtggtgtcacaggcctgtactctcacctactcaggagactgaggtgggaggatcccttgagcccaggagttcaaggcCAGCCTAGGCAAGA------TTTTTTTTaaataaataacaaatacattaaaaaa-ttaaaattacaaatcttttaacaaaaagccatcagaactaagactagacaaagagttcttacacataacacc---------------aaaagaaaaagttactaaactggatcttatcaaaatt-aaaactgttgctctgtgagagacctatgaagagcataaaaagacaagctacagaatgagagaagatatttgcaaaccacattttcaataaagacttgcattcacaatatatgaagaaatgtaaaaactcaacagt-aaaaatgaaatccaaataaacaataggcaatgagcaagacataaacagacgtttcactgaagaggataaacaccaggctaacaagcagatgaaaagacactcaacatcactatccagtagg-aaaatacaaattaaaactgcagtgatgagaatggctgaaatacaaaataaatgtagcaacagatgctggccagtttgcagagaaactggatcattc--atattgctagtaggaatggattttaaaatggtacagccactctggaagtggatattgcagttttcttcaaactgaacatgcaatttaccatatgactagcaattgccctcctaggcacttatttcaaacaaggtaaaactttatgttcatgaaaaacctgtatacaaatactcttgcagctttattcataatac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30348691 1300 + 173848474 acaggagaaaatttttgttactttgggtagttaggcaaaagattcttagat-aaaataccaaaa-gcatgatc--caaat------------------aaaaaaaagagagagaga-aattgggcttagttaaaatttaaaacttgagtgctccaaaaga----c---attgagagaatgagaagacaagccatagacagggagaaaatatttcacaatttatcacaaattacatttgtgttgaagaacatgtttccagaataatgtggcaagttcttaaactcaatatgtaagaagatgagcaattcaactgaaaatgagcaaaacacactaatatgctcaactgacatttacaaaagcacaaaaacaattcaatgaaggaaggagagctttcccaacaaacggtgctggagcaactggacaaccacagtggaaacaaaataagctgagcccaaacctcacgctttatac----------aaaaaaaaaaaaaactcaaaatgaatcacaggctttaatgtaa-----aacACACAGTTaaaattacaaacattgagccaggtgtggtgtcacaggcctgtactctcacctactcaggagactgaggtgggaggatcccttgagcccaggagttcaaggcCAGCCTAGGCAAGA------TTTTTTTTaaataaataacagatacattaaaaaatttaaaattacaaatcttttaacaaaaagccatcagaactaagactagacaaagagttcttacacataacacc---------------aaaagaaaaagttactaaactggatcttatcaaaatt-aaaactgttgctctgtgagagacctatgaagagcataaaaagacaagctacagaatgagagaagatatttgcaaaccacattttcaataaagacttgcattcacaatatatgaagaaatgtaaaaactcaacagt-aaaaatgaaatccaaataaacaataggcaatgagcaagacatgaacagacgtttcactgaagaggataaacaccaggctaacaagcagatgaaaagacactcaacatcactatccagtagg-aaaatacaaattaaaactgcagtgatgagaatggctgaaatacaaaataaatgtagcaacagatgctggccagtttgcagaggaactggatcattc--atattgctagtaggaatggattttaaaatggtacagccactctggaagtggatattgcagttttcttcaaactgaacatgcaatttaccatatgactagcaattgccctcctaggcacttatttcaaacaaggtaaaactttatgttcatgaaaaacctgtatacaaatactcttgcagctttattcataatac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       4546 1303 +   2037526 acaggagaaaatttttgttactttgggtagttaggcaaaacattcttagat-aaaataccaaaaggcatgaatctacaat------------------aaaaaaaaaagagagagagaattgggcttagttaaaatttaaaacttgagtgctccaaaaga----c---attgagagaatgagaagacaagccatagacagggagaaaatatttcacaatttatcacaaattacatttgtgttgaagaacatgtttccagaataatgtggcaagttcttaaactcagtatgtaagaagatgagcaactcaactgaaaatgagcaaaAcacacaaatatgctcaactgacatttac-aaagcacaaa-acaattcaatgaaggaaggagagctttcccaac-aacggtgctggagcaactggacaaccacagtggaaaaaaaataagctgagcccaaacctcacgctttatac----------aaaaaaaaaaaaaactcaaaatgaatcacaggctttaatgtaa-----aacacacagtt-aaattacaaacattgagccaggtgtggtgtcacaggcctgtactctcacctactcaggagattgaggtgggaggatcccttgagcccaggagttcaagaccagcctaggcaaga-------ttttttaaaataaataaca-atacattaaaaaa-ttaaaattacaaatcttttaacaaaaagccatcagaactaagactagacaaagagttcttacacataacaccaaaagtatgatcc--gtaaagaaaagttactaaactggatcttatcaaaatt-aaaactgttgctctgtgagagacctatgaagagcat-aaaagacaagctacagaatgagagaagatatttgcaaaccacatattc-ataaagacttgcattcacaatatatgaagaaatgt-aaaactcaacagt-aaaaatg-aatccaaataaacaata-gcaatgagcaagacatgaacagacgtttcactgaagaggataaacaccaggctaacaagcagatgaaaagacactcaacatcgctatccagtagg-aaaatac-aattaaaactgcagtgatgagaatggctgaaatacaaaataaaggtagcaacagatgctggcaaggttacagagaaactggatcattc--atattgctggtaggaatggattttaaaatggtacagccactctggaaatggatattgcagttttcttcaaactgaccatgcaattta-catatgactagcaattgccctcctaggcacttatttcaaacaagggaaaactttatgttcatgaaaaacctgtatacaaatactcttgcagctttattcataatac
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30510891 1319 + 172585720 gtaagagaaaatttttttgactttgggtagttaggcaaaagattcttagataaaaataccaaaa-gcatgatctacaagt----------gaaaaaaaaaaaaaaagagatagaga-aattgggcttagttaaaatttaaaacttgagtgctccaaaaga----cgtaattgagaaaatgagaagacaagccatagactgggagtaaatatttcacaatttattacaaatcacatttgcgatgaagaacatgtatccagaac-atgtgacaagttcttaaactca--atgtaagaagacaagcaactcaactgaaagtgagcaaaacatacaaatatgctcaactgacttttacaaaagcacaaaagcaattcaatgaaggaaggagagcttgcccaacaaacggtgctggagcaactggacaaccgcagtggaaaa-----accctgagcccaaatctcacactttatac---------------aaaaaataactcaaaatgaatcacaagctttaatgcaa-----gacACAGAGTTaaaatggcaaacactgagctgggcctggtgtcacagacctgtactctcagctactcgggaggctgaggtgggaggatccctggagcccaggagttcaaggACAGCCTAGGCCAAAATTTTTTTTTTCTAAAATAAATAATaaa----ttaaaaa--ctttaaattacaacctttgaagaaaaagtcatcagaaataagactggacaaagagttcttagacataacaccaaaagtatgatccataaaagaaaaagttaataaattagatcttatcaacattaaaaactgttgctctgtgagagacctgtgaagagcataaaaaagcaagctagagcatgagagaagatatttacagacaacatattctgtaaagacttgcactcagaatgtatgaagaaatgtaaaaacccaacagt-aaaaatgaaattcaaatacaaaacaggcaatgagcaagacaggaacagacatttctctgaagaggataaacaccggactaaccagcaaatgaaaagacactcaacatgattatccagtaggaaaaatacaaattaaaaccacaatcatgagaatggctgaaatacaaaataaaggtaacaacaggtgctggcaaggatgcagagaaactgggttactcttatgttgctggtaggaa-ggactttaaaatgggacagccactctggaaatgggtattgcagttttcttcaaacttaacatgcaatttaccttatgactagcaactgacctcctaggcacttatttcaaacaagggaaaatgttatgttcacaaaacacctgtacacaaatactcttgcagctttatccataacac
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     164834 1321 -    863181 acaggagaaaatttttgtgacgttgggtagttagacaaaagattcttagat-aaaataccaaaa-acatgttctacaaat--aaaagagagaaagagagagagagagagagagaga-aattggacttagttaaaatttaaaacttcagcgctcc-aaaga----c---atcgagaaaatgagaagacaagtcatagactgggagaaaatatttcacaatttatcacaaattacatttgtgatgaagaacctgcatccaga---atgtgacaagttcttaaactca--atgtaagaagatgagcaactcaactaaaaatgagcaaaacacacaaatatgttcaactgacttttac-aaagcacaatagcaattcaatgaaggaaggagcactttcccaacaaacggtgctggagcaactggacaaccacagtggaaaa-aaataacctgagcccaaacctcatgccttgtac---------------aaaaaataactcaaaatgaatcaaaagctttaatgtaa-----aacacaCAGTTaaaattacaaacgttgagtcaggcgttgtgtcacaggcctgtactctcagctactcgggaggctgaggtgggaggatcccttgagcccaggagttcaaggACAGCCTAGGCAAGA---TTTTTTTTCTaaaataaataataaataagttaaaaa--ttttaattacaaatcttctaagaaaaagtcatcagaactaagactggataagtagttcttagacataacaccaaaagtatgatccataaaagaaaaggttaataaattggatcttatcaaaactaaaaactgttgctctgtgagagacctgtgaagagc-taaaaagacaagctacagaacgagagaagatatttacagacaacatattctgtaaagac-tgtattcagaatatatgaagaaatttaaaaa--caacagtaaaaaatgaaatccaattacaaaataggcaataagcaagacatgaacagacgtttcactgaagaggataaacactggactaataagcagatgaaaaggtgctcaacatcattattcagtagg-aaaatacaaattaaaactgcaatgatgagaatggctgatatacaaaataaaggtaacaacaggtgctggcaaggatgcagagaaactgggtcactcttatattgctggtagggatgtatttgaaaatggtacagccactctggcaatggatattgcagttttcttcaaactgaacttgtaatttaccatatgaccagcaagtgccctcctgagcacttatttcaaacaagggaaaacttaatgctcatgaaaaacctgtacacaaatattcttgcagctttattcataatac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29329685 1295 -  71996105 atagaaggaaatttttgtgactttgggtagttaggcaaaagattcttagataaaaataccaaaa-gcatgatctacaagt------------gaaaaaaaaagagagagatagaga-aattgggcttagttaaaatttaaaacttgggtgctcc-aaaagacatc---attgagaaaatgagaagacaagccatagactgggagtaaatatttcacaatttatcacaaattacatttgtgatgaagaacatgtatccagaat-atgtgacaagtttttaaactta--atgtaagaagagaagcaactcaactgaaagtgagcaaa--acataaatatgctcaactgacttaca--aaagaacaaaagcaattcaatgagggaaggagagcttgcccaacaaacggtgct-gagcaactggacag---------------------ctgagcccaaatctcacactttatac---------------aaaaaataactcaaaatgaatcacaagctttaatgtaa-----gacACAGAGTTAAAATGGCaaacattgagccaggcatggtgtcacagacctgtactctcagctactcaggaggctgaggtgggaggatcccttgagcccaggagttcaaggACAGCCTAGGCCAAA-TTTTTTTTTTCTAAAATAAATAATAAATaaactaaaaa--tttcaaattacaacctttgaagaaaaagtcatcagaactaagactggacaaagggttcttagacataacagcaaaagtatgatccataaaagaaaaagttaacaagttcgatcttatcaaaactaaaaactgttgctctgtgagggacctgtgaagagc-taaaaagataagctacagaacgagagaagatatttacagacaacatattctgtaaagac-tgtattcagaatatatgaagaaatgtaaaaa--caacagtaaaaaatgaagtccaattacaaaataggcaatgagcaagacaagaacagacatttctctgaagaggataaacaccgggctaacaagcaaatgaaaagacactcaacatgattatccagtaggaaaaatacaaattaaaaccacaatcatgagaatggctgaaatacaaaataaaagtaacaacagatgctggcaaggatgcagagaaactgggtcactcttatattgctggtaggaa-ggattttaaaatggtacagtcactctggaaatgggtattgcagttttcttcaaacttaacatgcaatttaccatatgactagcaatcgacctcctaggcacttatttcaaacaagggaaaactttacgttcac-aaaaccctgtacacaaatactcttgtaactttatccataacac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     164564 1323 +    273075 acaggagaaaatttttgtgacgttgggtagttagacaaaagattcttagat-aaaataccaaaa-acatgttctacaaataaaagagagaaagagagagagagagagagagagaga-aattggacttagttaaaatttaaaacttcagcgctcc-aaaga----c---atcgagaaaatgagaagacaagtcatagactgggagaaaatatttcacaatttatcacaaattacatttgtgatgaagaacctgcatccaga---atgtgacaagttcttaaactca--atgtaagaagatgagcaactcaactaaaaatgagcaaaacacacaaatatgttcaactgacttttac-aaagcacaatagcaattcaatgaaggaaggagaactttcccaacaaacggtgctggagcaactggacaaccacagtggaaaa-aaataacctgagcccaaacctcatgccttgtac---------------aaaaaataactcaaaatgaatcaaaagctttaatgtaa-----aacacaCAGTTaaaattacaaacgttgagtcaggcgttgtgtcacaggcctgtactctcagctacccgggaggctgaggtgggaggatcccttgagcccaggagttcaaggACAGCCTAGGCAAGA---TTTTTTTTCTaaaataaataataaataagttaaaaa--ttttaattacaaatcttctaagaaaaagtcatcagaactaagactggataagtagttcttagacataacaccaaaagtatgatccataaaagaaaaggttaataaattggatcttatcaaaactaaaaactgttgctcggtgagagacctgtgaagagc-taaaaagacaagctacagaacaagagaagatatttacagacaacatattctgtaaagac-tgtattcagaatatatgaagaaatttaaaaa--caacagtaaaaaatgaaatccaattacaaaataggcaataagcaagacatgaacagacgtttcactgaagaggataaacactggactaataagcagatgaaaaggtgctcaacatcattattcagtagg-aaaatacaaattaaaactgcaatgatgagaatggctgatatacaaaataaaggtaacaacaggtgctggcaaggatgcagagaaactgggtcactcttatattgctggtagggatgtatttgaaaatggtacagccactctggcaatggatattgccgttttcttcaaactgaacttgtaatttaccatatgaccagcaagtgccctcctgagcacttatttcaaacaagggaaaacttaatgctcatgaaaaacctgtacacaaatattcttgcagctttattcataatac
i manLeu1.NW_012101121v1   M 505 I 1204
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=877856.000000
s hg38.chr6_GL000254v2_alt  1160960 560 +   4827813 tcctggaagtaattattcataattacttccataaactggaaataatgcaattgtctttcagtgggtgaaGGAGATCTgctggttgaactcataactgagtctacacaagtgccctttctcaagactactatcctgcttctcttt----------------gcatatctcccattttctcacaaagaatattaaagacatgtactcaaggatcaaaatttaatgaacataaatattttactgctccatcaaaggcattcttaaatgggactgcagtttggagccactgccttggttctgctaaggtgctgggtgtgctaccgaccttggcatttgcagcattaatggaaaagtcaacataatgaaacaggcaaatggcatcttggtattactgtgaaaacaggtttccctccaggactctctgaaggcagctcagggggccacaCTTTCAAAATGGCAGAGATCAATTATAGTTCCTAGTGAGACCCAACCCCTAGCCTATTCAGATTCAG--------CACTCTCTCTCGCTCTTTTTGTTCCCTCATTCTTCCAACTTATAATTGTATATATTTTCAAATGTG
s panTro5.chr6             30119315 576 + 175400573 tcctggaagtaaTTATTCATAATTACTTCCATAAACTGGAAGTAATGCAATTGTCTTTCAGTGGGTGAGGGGGATCTgctggttgaactcataactgagtctacacaagtgccctttctcaagactactatcctgcttctctgtgcagtaagtgttttaggcatatctcccattttctcacaaagaatattaaagacatgtactcaaggatcaaaatttaatgaacataaatattttactgctccatcaaaggcattcttaaatgggactgcagtttggagccactgccttgattctgctaaggtgctgggtgtgttaccgaccttggcatttgcagcattaatggaaaagtcaacataatgaaacaggcaaatggcatcttggtattactgtgaaaacaggtttccctccaggactctctgaaggcagctcagggGGCCATACTTTCAAAATGGCAGAGATCAATTATGGTTCCTAGTGATACCCAACCCCTAGCCTATTCAGATTCAG--------CACTCTCTCTCGCTCTTTTTTTTCCCTCATTCTTCCAACTTATAATTGTATATATTTTCAAATGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30349991 575 + 173848474 tcctggaagtaaTTATTCATAATTACTTCCATAAACTGGAAATAATGCAATTGTCTTTCAGTGGGTGAGGGGGATCTgctggttgaactcataactgagtctacacaagtgccctttctcaagactactatcctgcttctctgtgcagtaagtgttttaggcatatctcccattttctcacaaagaatattaaagacatgtactcaaggatcaaaatttaatgaacataaatattttactgctccatcaaaggcattcttaaatgggactgcagtttggagccactgccttgattctgctaaggtgctgggtgtgttaccgaccttggcatttgcagcattaatggaaaagtcaacataatgaaacaggcaaatggcatcttggtattactgtgaaaacaggtttccctccaggactctctgaaggcagctcagggGGCCATACTTTCAAAATGGCAGAGATCAATTATGGTTCCTAGTGATACCCAACCCCTAGCCTATTCAGATTCAG--------CACTCTCTCTCGCTCTTTTT-TTCCCTCATTCTTCCAACTTATAATTGTATATATTTTCAAATGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       5849 569 +   2037526 tcctggaagtaattattcataattacttccataaactggaaataatgcaattgtctttcagtgggtgaaGGAGATCTgctggttgaactcataactgagtctacacaagtgccctttctcaagactactat-ctgcttctctgtgcagtaagtgttttaggcgtatctcccattttctcac-aagaatattaaagacatgtactcaaggatcaaaatttaatgaacataaatattttactgctccatcaaaggcattcttaaatgggactgcagtttggagccactgccttgattctgctaaggtgctgggtgtgttaccgaccttggcatttgcagcattaatggaaaagtcaacataatgaaacaggcaaatggcatcttggtattactgtg-aaacaggtttccctccaggactctctgaaggcagctcagggGGCCATACTTTCAAAATGG-AGAGATCAATTATGGTTCCTAGTGAGACCCAA-CCCTAGCCTATTCAGATTCAT--------CACTCT-TCTCGCTCTTTTT-TTCCCTCATTCTTCCAACTTATAATTGTATATATTTTCAAATGTG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30512210 538 + 172585720 ----------------------------tttcaaactgaaaataatgaaattgtctttcagtgggtgaaGGAGACCTgctggttgaactcataactgagtcaacacaagtgcccttcctcaaggctaccatcctgcttctctgtgtagtaagggt-ttatgcgtatttcccactttctctcaaataatattaaagacatgtactgagggatcaaaatctaataaacataaa-tttttactgctccatcaaagataatctgaagtgggactgtggtttggagccactgcc-tggttctgctgaggtgctgggtgtgttacttaccgtggcatttgcaacattaatggaaaagtcaacgtaatgaaacaggcagatggcaacttggtatttctgtgaaaacaggtttccctccagga--ctctgaaggcagctcagggga-cACACTTTCAAAATGGCAAAGATCAATTATGGTTCCTAGTGGGACA------CTAGCCTATTCCAGTTCAG------ctctctgtctctctctctctGTTTTCCCtcattcttccaacttataattgtgtaaattttcaaatgtg
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     166155 553 -    863181 ----------------------------ccccaaactcaaaataatgcaattgtctttctgtgggtgagtgAGATCTgctgtttgagttcataactgagtc-acacaagtaccctttctcaaggctaccatcctgcttatctgtgcaataagcgtgttatgcatatttcccattttcaaacaaagaatattaaagacatgtactcaaggatcaaaatttaatgaacgtaaattttttactgctccatcaaagacattcttaagtgGGaatgcaatttgatgatactgcc-tgtttctgctcaggtgctgggtgtgttacctaccatggcatttgcagcattaatggaaaagtcaacataatgaaacaggcagatggcatcttggtatttctgtgaaaacaggtttccctcctggactctctgaaggcagctcagggga-cACACCTTCAAAATGGCAAAGATCAATTATGGTTCCTAGTGGGACACAACCCCTAACCTATTCCAACTCAGCGCActctctctctctctctctctctTTTTTCCCTCATTCTTCCAACTTGTAATTGTATAAATTTTCAAATGTG
i cerAty1.NW_012002535v1   C 0 I 314
s chlSab2.chr17            29330980 545 -  71996105 ----------------------------cttcaaactggaaataatgaaattgtctttcagtgggtgaaGGAGATCTgctggttgaactcataactaagtctacgcaagtgcccttcctcaaggctaccatcctgcttctctctacgataagtgttttatgcatatttcccactttctcacaaataatattaaagacatgtactgagggatcaaaatctaataaacataaa-tttttactgctccatcaaagagaatctgaagtgggactgtgctttggtgatactgcc-tggttctgctaaggtgctgggtgtgttacccaccgtggcatttgcagcattaatggaaaagtcgacataatgaaacaggcagatggcatcttggtatttctatgaaagcaggtttccctccaggactctctgaaggcagctcggggGG-CACACTTTCAAAATGGCAAAGATCAATTATGGTTCCTAGTGGGACACAACCCCTAACCTATTCTGACTCAG--------CACTCTCTCTCTCTCTCTGTTTTCCCTCATTCTTCCAACTTATAATTGTATAAATTTTCAAATGTG
i chlSab2.chr17            C 0 C 0
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     165887 1204 +    273075 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=2865.000000
s hg38.chr6_GL000254v2_alt  1161520 2 +   4827813 CA
s panTro5.chr6             30119891 2 + 175400573 CA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30350566 2 + 173848474 CA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       6418 2 +   2037526 CA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30512748 2 + 172585720 ca
i rheMac8.chr4             C 0 C 0
s chlSab2.chr17            29331525 2 -  71996105 CA
i chlSab2.chr17            C 0 C 0
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     165887 1204 +    273075 I
e cerAty1.NW_012002535v1     166708 314 -    863181 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=670394.000000
s hg38.chr6_GL000254v2_alt  1161522 426 +   4827813 AAGAAGCTGAAAGAATAGTGCAGTAAAATTCAAGTTATCACTCTGATATATCTGATTAATATCTCTTTATATGCATGAAAGCAGCGTgtggaatgatagacaatagagacccagaagggtaagagtggttggcagtgggtgtatcgt-agaggagtttcttgttggggtcaatgtatctgtctccagtggtggatgcactgaaggccctgactttgccacaactcaatatagcaatgtagcaaaactgcacctgtgccccatgaatatatacgaatttaaaaatttaaaaataaaaTAACATCTCTCTTTGTAGATACAGGTAGACATGTTTGCATA----------------------------------------------------------------GCatgtgtgtgaatg--------tgtgtgtatgtgtgtgtaGAGAGGCAGCAGGAATGAAGAGATTAAGATTTTGTGACTGAGCCATTCTAAAGTAAC--
s panTro5.chr6             30119893 434 + 175400573 AAGAAGCTGAAAGAATAGTGCAGTAAAATTCAAGTTATCACTCTGATATATCTGATTAATATCTCTTTTTATGCATGAAAGCAGCATgtggaatgatagacaatagagacccagaagggtaagagtggttggcagtgggtgtatcat-agaggagtttcttgttggggtcaatgtatctgtctccagtgctggatgcactgaaggccctgactttaccacaactcaatatagcaatgtagcaaaactgcacctgtgccccatgaatatatacgaatttaaaaatttaaaaataaaaTAACATCTCTCTTTGTAGATACAGGTAGACATGTTTGCATA----------------------------------------------------------------GCatgtgtgtgaatgtgtgtgtatgtgtgtatgtgtgtgtaGAGAGGCAGCAGGAATGAAGACATTAAGATTTTGTGACTGAGCCATTCTAAAGTAAC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30350568 434 + 173848474 AAGAAGCTGAAAGAATAGTGCAGTAAAATTCAAGTTATCACTCTGATATATCTGATTAATATCTCTTTTTATGCATGAAAGCAGCATgtggaatgatagacaatagagacccagaagggtaagagtggttggcagtgggtgtatcat-agaggagtttcttgttggggtcaatgtatctgtctccagtgctggatgcactgaaggccctgactttaccacaactcaatatagcaatgtagcaaaactgcacctgtgccccatgaatatatacgaatttaaaaatttaaaaataaaaTAACATCTCTCTTTGTAGATACAGGTAGACATGTTTGCATA----------------------------------------------------------------GCatgtgtgtgaatgtgtgtgtatgtgtgtatgtgtgtgtaGAGAGGCAGCAGGAATGAAGACATTAAGATTTTGTAACTGAGCCATTCTAAAGTAAC--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       6420 424 +   2037526 AAGAAGCTGAAAGAATAGTGTAGTAAAATTCAAGTTATCACTCTGATATATCTGATTAATATCTCTTTATATGCATGAAAGCAGCGTgtggaatgatagacaatagagacccagaagggtaagagtggttggcagtgggtgtattgt-agaggagtttcttgttggggtcaatgtatctgtctccagtgctggatgcactgaaggccctgactttaccacaactcaatatagcaatgtagcaaaactgcacctgtgccccatgaatatatacgaatttaaaaatttaaaa--taaataaCATCTCTCTTTGTAGATACAGGTAGACATGTTTGCATA----------------------------------------------------------------GCatgtgtgtgaatg--------tgtgtgtatgtgtgtgtaGACAGGCAGCAGGAATGAAGAGATTAAGATTTTGTGACTGAGCCATTCTAAAGTAAC--
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30512750 489 + 172585720 aagaatctgaaagaatagtgcagtaaaATTCAAGTTACCACTCTGCCATATTTGCTTAATATCTCTTTATATACATGAAAGCAGCATgtggaatgatggccaatagtgacccagaagggtaagggtggttggcagtgggtgtattatgagaagggtttcttggtgggtacaatgtgcccggctccagtgacggatgcactgaaggccctgactttaccacaactcaatatagcaatgtagcaaaattgcactggtgcctcatgaatgtatacaaatttacaaaataaaaaATAAAATAACATATC--TGTATAGATACAGGTAGGTATGTTTGTATAGCAtgtgtgtgaatatgtgtgtgtgtgaatatgtgtgtgtgtgaatatgtgtgtgtgtgaatatgtgtgtgtgtgtatgagtgtc--tgtgtgtgtgtgtAGAGAGAGAGGCAGCGCCAATG--------AAGATTGTGTGACTGAGACATTCTAAAGTAACTT
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     167022 433 -    863181 aagaaGCTGAAAGAATAGTGCAGTAAAATTCAAGTTATCACTCTGATATATTTGATTAATATCTCTTTACATACATGAGAGCAGCATgtggaatgatagacaatagagactcagaagggtaagggtggctggcggtgggtgtataac-agaggggtttcttgtcgggtacaatgtatctgtctgcagtgacggatgcactgaaggccccgactttaccgcaactcaatatagcagtgtagcaaaactgcacctgtgccccatgaatatgtacgaatttaaaaagttaaaaataaaaTAACATCTCTTTTTGTAGATACAGGTAGATATG-TTGTATA----------------------------------------------------------------gtgtgtgtgtgtgtgtctgtg--tgtgtgtgtgtgtAGAGAGAGAGGCAGCAGGAATGAAGAGATTAAGATTTTGTGACTGAGCCATTCtaaagtaactt
i cerAty1.NW_012002535v1   I 314 C 0
s chlSab2.chr17            29331527 427 -  71996105 AAGAATCTGAAAGAATAGTGCTGTAAAATTCAAGTTACCACTCTTCCATATTTGCTTAATATCTCTTTATATACATGAAAGCAGCATgtggaatgatggacaacggagacccagaagggtaagggtggttggcagtgggtgtatgatgagaagggtttcttggtgggtacaatgtgcccgactccagtgacggatgcattgaaggccctgactttaccacaactcaatatagcaatgtagcgaaattgcactggtgccccctgaatgtatatgaatTTACAAAATAAACAACAAAATAACATATCTCTTTGCAGATATAGGTAGATAGGTTTGTATA----------------------------------------------------------------GCAtgtgtgtgaa----------tgtgtgtgtgcgtgGAGAGAGAGGTATTACAAATGAAGAGATTAAGATTTTGTGACTGAGCCATTCTAAAGTAACTT
i chlSab2.chr17            C 0 C 0
e cebCap1.NW_016107755v1     524394 96042 -   1771730 T
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     165887 1204 +    273075 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=17234.000000
s hg38.chr6_GL000254v2_alt  1161948 7 +   4827813 AAACATA
s panTro5.chr6             30120327 7 + 175400573 AAACATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30351002 7 + 173848474 AAACATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       6844 7 +   2037526 AAACATA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30513239 7 + 172585720 AAACACA
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     167455 7 -    863181 aaacata
i cerAty1.NW_012002535v1   C 0 I 15
s chlSab2.chr17            29331954 7 -  71996105 AAACATA
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1     428352 7 -   1771730 AAACATA
i cebCap1.NW_016107755v1   T 96042 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     165887 1204 +    273075 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=235973.000000
s hg38.chr6_GL000254v2_alt  1161955 87 +   4827813 AAACACGCATGGATAAATGTCTATGTGACAACAAACCTGAATATAAACATGAAAGAACATGTCTATAAACATATCTCTGGCTAGATA
s panTro5.chr6             30120334 87 + 175400573 AAACACGCATGGATAAATGTCTATGTGACAACAAACCTGAATATAAACATGAAAGAATATGTCTATAAACATATCTCTGGCTAGATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30351009 87 + 173848474 AAACACGCATGGATAAATGTCTATGTGACAACAAACCTGAATATAAACATGAAAGAATATGTCTATAAACATATCTCTGGCTAGATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       6851 87 +   2037526 AAACACGCATGGATAAATGTCTATGTGACAACAAACCTGAATATAAACATGAAAGAATATGTCTGTAAACATATCTCTGGCTAGATA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30513246 87 + 172585720 AAACACGCATGGATAAATGTGTCTGTGAAAACAAACCTGAATACAAACATGAAACCATATATCTATAAACACATCTCTGGATAGATA
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     167477 87 -    863181 aaacATGCATGGACAAATGTCTGTGTGACAACAAATCTGAATATAAACATGAACAAATATGCCTATAAACACATCTCTGAATAGATA
i cerAty1.NW_012002535v1   I 15 C 0
s chlSab2.chr17            29331961 87 -  71996105 AAACACGCATGGATAAATGTGTCTGTGACAACAAACTTGAATACAAACATGAAACAATATATCTATAAACACATCTCTGGATAGATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     167091 87 +    273075 AAACATGCATGGACAAATGTCTGTGTGACAACAAATCTGAATATAAACATGAACAAATATGCCTATAAACACATCTCTGGATAGATA
i manLeu1.NW_012101121v1   I 1204 C 0
s cebCap1.NW_016107755v1     428359 86 -   1771730 AAACA-GCACGTACAAATGTGTATGTGACATCAACCCTGAATACAAACGTGAAAGAACAAGTCTATAAACACAACTCTGGGTAGGTA
i cebCap1.NW_016107755v1   C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=867968.000000
s hg38.chr6_GL000254v2_alt  1162042 271 +   4827813 ACCTATGAAAGAATTCCCTACCCCAGCTCCCTTACTGGTTACCCTGCGAACACAGGCAGGCAGGGAACAGGACCCAACTAGGTTCCCTCATCC---TCTTGCTTCCAGGCAGGTCCTGCATCCACTCCTGCTGCACAGAGGGCTCCCATCTCTGCCTTGGTCGGTTTCACAGGTGCTCCCCTAACTCTCTCTGCCACCACTGCCTTACCTGGGTGGAGCTGAGGCTGCCTTGACCAAGAACAGCACCACCCATCTGTGTGC-CCCAAGACCAGGA
s panTro5.chr6             30120421 265 + 175400573 ACCTATGAAAGAATTCCGTACCCCAGCTCCCTTACTGGTTACCCTGTGAACA----CAGGCAGGGAACAGGACCCAACTAGGTTCCCTCATCC---TCTTGCTTCCAGGCAGGTCCTGCATCCACTCCTGCTGCACAGAGGGCTCCCATCCCTGCCTTGGTCGGTTTCACAGGTGCTCCCCTAACTCTCTCTGCCACCACTGCCTTACCTGGGTGGAGCTGAGGCTGCCCTGACCAAGAACAGCACCACCCATC--TGTGC-CCCAAGACCAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30351096 265 + 173848474 ACCTATGAAAGAATTCCGTACCCCAGCTCCCTTACTGGTTACCCTGTGAACA----CAGGCAGGGAACAGGACCCAACTAGGTTCCCTCATCC---TCTTGCTTCCAGGCAGGTCCTGCATCCACTCCTGCTGCACAGAGGGCTCCCATCCCTGCCTTGGTCGGTTTCACAGGTGCTCCCCTAACTCTCTCTGCCACCACTGCCTTACCTGGGTGGAGCTGAGGCTGCCCTGACCAAGAACAGCACCACCCATC--TGTGC-CCCAAGACCAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       6938 268 +   2037526 ACCTATGAAAGAATTCCCTACCCCAGCTCCCTTACTGGTTACCCTGTGAACACAGGCAGGCAGGGAACAGGACCCAACTAGGTTCCCTCATCC---TCTTGCTTCCAGGCAGGTCCTGCATCCACTCCTGCTGCACAGAGGGCTCCCATCCCTGCCTTGGTCGGTTTCACAGGTGCTCCCCTAACTCTCTCTGCCACCACTGCCTTACCTGGGTGGAGCTGAGGCTGCCCTGA-CAAGAACAGCACCACCCATC--TGTGC-CCCAAGACCAGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30513333 273 + 172585720 GCTTATGAACGAATTCCCTACCCCAGCTCCCTTACTGGTTACCCTGTGAACACAGGCAGGCAGGAAACAGGACCCAGCTAGGGTTCCTCATCCTTCTCTTGCATCCAGGCAGGTTCTGCATCTGCTACTGCTGCACAGAGGGCTCCCATCCCTGTCTTGGTCAGTTTCACAGGTGCTCCCCTAACTCTCTCTGCCTCCACTGCTTTACCTGGGTAGAGCTGAGGCTGCCCTGACCAAGAACAGCACCACCCACC--TGTGCCCCCAAGACCAGGA
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     167564 273 -    863181 GCTTATGAACAAATTCCCTACCCCAGCTCCCTTACTGGTTACCCTGTGAACACAGGCAGGCAGGGAACAGGACCCAGCTAGGTTCCCTCATCCTTCTCTTGCATCCAGGCAGGTCCTGCATCTGCTCCTGCTGCACAGAGGGCTCCCATCCCTGCCTTGGTCTGTTTCAGAGGTACTCCCCTAACTCTCTCTGCCTCCACTGCCTTACCTGGGTGGAGCTGAGGCTGCCCTGACCAAGAACAGCACCACCCACC--TGTGCCCCCAAGACCAGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29332048 258 -  71996105 GCTTATGAACGAATTCCCTACCCCAGCTCCCTTACTGGTTACCCTGTGAACACAGGCAGGCAGGAAACAGGACCCTGCTAGGGTTCCTCATCCTTTTATTGCATCCAGGTAGGTCCTGCATCCACTCCTGCTGCACAGGGGGCTCCCATCCTTGCCTTGGTCACTTTCACAGGTGCTCCCATAACTCTCTCTGCCTCCACTGCTTTACCTTGGTGGAGCTGAGGCTGCCCTGACCAAGAACAGCA-----------------CCCAAGACCAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     167178 273 +    273075 GCTTATGAACAAATTCCCTACCCCAGCTCCCTTACTGGTTACCCTGTGAACACAGGCAGGCAGGGAACAGGACCCAGCTAGGTTCCCTCATCCTTCTCTTGCATCCAGGCAGGTCCTGCATCCACTCCTGCTGCACAGAGGGCTCCCATCCCTGCCTTGGTCTGTTTCACAGGTACTCCCCTAACTCTCTCTGCCTCCACTGCCTTACCTGGGTGGAGCTGAGGCTGCCCTGACCAAGAACAGCACCACCCACC--TGTGCCCCCAAGACCAGGA
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     428445 270 -   1771730 GCCTATGAATGAATTCCCTACTCCAGA-ACTTTCCTGGTTGTCCTGTGAACATAGGCGGGCAGGGACCAGGACCCGACTAGGGTCCCTCATCC---TCTTACGCCCAAGCAGGTCCTGCACCTGCTCCTGCTGCACAAAGGACTCCCATCCCTTCCTTGGTCTCTTTCACAGGCGCTCCTCTAACTCTCTCTGCCACCACTGCCTTACCTGGGTGGAGCTGAGGCTGCCCTGACCAAGAAGGGCACTACCCATCTGTGTGC-CCCAAGACTAGGA
i cebCap1.NW_016107755v1   C 0 I 70
s otoGar3.GL873550         17456266 260 -  18854210 ACGTATGAATGAGTTCCCTGCTCCAGCTCCC-TATTGGTTACTCTGTGAAGCCAGGCTGG--GGAAACAGGACCTAA-TGGGGTCCCTCATCCTTCTCCTGTTCCCAGGCAGGTCCTG------ATCCTGCTACTCAAAGGGATCCCACCACTGCTCTGGTCTCTAGGTCAGGGA---CCCTACCGCACTCGGGCACCACTGCCTGGCATGGGTGAGGCTGAGGCTACCCTGACCAAGAAAAGCACTGACCACCTGTGTGC-CCCACAACAAGT-
i otoGar3.GL873550         N 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=65797.000000
s hg38.chr6_GL000254v2_alt  1162313 25 +   4827813 AGTTAGGAGGAACCACGTAACAGAG
s panTro5.chr6             30120686 25 + 175400573 AGTTAGGGGGAACCACACAACAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30351361 25 + 173848474 AGTTAGGGGGAACCACACAACAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       7206 25 +   2037526 AGTTAGGGGGAACCACGCAACAGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30513606 25 + 172585720 AGTTAGGAAGAACCACGCAACAGGG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     167837 25 -    863181 AGTTAGGAGGAACCACGCAACAGGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29332306 25 -  71996105 AGTTAGGAGGAACCACGCAACAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     167451 25 +    273075 AGTTAGGAGGAACCACGCAACAGGA
i manLeu1.NW_012101121v1   C 0 C 0
s otoGar3.GL873550         17456526 24 -  18854210 AGTT-GGGGGAACCGAGCATTGGGG
i otoGar3.GL873550         C 0 I 34
e cebCap1.NW_016107755v1     428715 70 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=39995.000000
s hg38.chr6_GL000254v2_alt  1162338 19 +   4827813 TCAATAACTATCCCACCTC
s panTro5.chr6             30120711 19 + 175400573 TCAATAACTATCCCACCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30351386 19 + 173848474 TCAATAACTATCCCACCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       7231 19 +   2037526 TCAATAACTATCCCACCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30513631 19 + 172585720 TCAGGAACTCTCCCACCTC
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     167862 19 -    863181 CCAGTAACTATCCCACTTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29332331 19 -  71996105 TCAGGAACTCTCCCACTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     167476 19 +    273075 CCAGGAACTATCCCACCTC
i manLeu1.NW_012101121v1   C 0 C 0
e otoGar3.GL873550         17456550 34 -  18854210 I
e cebCap1.NW_016107755v1     428715 70 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=75621.000000
s hg38.chr6_GL000254v2_alt  1162357 23 +   4827813 CCCAGTCAGTCTGAACTGATGGC
s panTro5.chr6             30120730 23 + 175400573 CCCAGTCAGTCTGAACTGATGGC
i panTro5.chr6             C 0 T 18
s panPan2.chr6             30351405 23 + 173848474 CCCAGTCAGTCTGAACTGATGGC
i panPan2.chr6             C 0 N 0
s gorGor5.CYUI01015528v1       7250 23 +   2037526 CCCAGTCAGTCTGAACTGATGGT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30513650 23 + 172585720 CCCAGTCAGTCTGAACTGATGGC
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     167881 23 -    863181 CCCAATCAGTCTGAACTGATGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29332350 23 -  71996105 CCCAGTCAGTCTGAACTGATGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     167495 23 +    273075 CCCAATCAGTCTGAACTGATGGC
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     428785 23 -   1771730 CCCAGTCAGTTTGAACTGATGGC
i cebCap1.NW_016107755v1   I 70 C 0
e otoGar3.GL873550         17456550 34 -  18854210 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=35743.000000
s hg38.chr6_GL000254v2_alt  1162380 21 +   4827813 GGGAGATGCTGATGCTTGCTT
s gorGor5.CYUI01015528v1       7273 20 +   2037526 -GGAGATGCTGATGCTTGCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30513673 21 + 172585720 AGGAGATACTGATGCTTGCTT
i rheMac8.chr4             C 0 I 5
s cerAty1.NW_012002535v1     167904 21 -    863181 AGGAGATACCAATGTTTGCTT
i cerAty1.NW_012002535v1   C 0 I 5
s chlSab2.chr17            29332373 21 -  71996105 AGGAGATACTGATGCTTGCTT
i chlSab2.chr17            C 0 n 0
s manLeu1.NW_012101121v1     167518 21 +    273075 AGGAGATACCAATGCTTGCTT
i manLeu1.NW_012101121v1   C 0 I 5
s cebCap1.NW_016107755v1     428808 21 -   1771730 AGGAGATGCTGATGCTTGCTT
i cebCap1.NW_016107755v1   C 0 I 57
e otoGar3.GL873550         17456550 34 -  18854210 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I
e panTro5.chr6             30120753 18 + 175400573 T

a score=16944.000000
s hg38.chr6_GL000254v2_alt  1162401 36 +   4827813 ATCCTCATTCCCCGTTTATTTATTCTTCGTTAATTC
s panPan2.chr6             30199858 36 + 173848474 ATCCTCATTCCCAGTTCATTTATTCTTCATTAATTC
i panPan2.chr6             N 0 C 0
s gorGor5.CYUI01015528v1       7293 36 +   2037526 ATCCTCATTCCCCGTTTATGTATTCTTCATTAATTC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30513699 36 + 172585720 ATCCTCATTCCCAGCTCATTTATTCTGCATTAATTC
i rheMac8.chr4             I 5 I 7
e otoGar3.GL873550         17456550 34 -  18854210 I
e cebCap1.NW_016107755v1     428829 57 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     167539  5 +    273075 I
e chlSab2.chr17            29332394  0 -  71996105 I
e cerAty1.NW_012002535v1     167925  5 -    863181 I
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I
e panTro5.chr6             30120753 18 + 175400573 T

a score=3348.000000
s hg38.chr6_GL000254v2_alt  1162437 14 +   4827813 AGTCCAAACTCCCC
s panPan2.chr6             30199894 14 + 173848474 AGTCCAATCTCCCC
i panPan2.chr6             C 0 N 0
s gorGor5.CYUI01015528v1       7329 14 +   2037526 AATCCAAACTCCCC
i gorGor5.CYUI01015528v1   C 0 C 0
e otoGar3.GL873550         17456550 34 -  18854210 I
e cebCap1.NW_016107755v1     428829 57 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     167539  5 +    273075 I
e chlSab2.chr17            29332394  0 -  71996105 I
e cerAty1.NW_012002535v1     167925  5 -    863181 I
e macFas5.chr4             29884116 3584 - 170955103 I
e rheMac8.chr4             30513735  7 + 172585720 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I
e panTro5.chr6             30120753 18 + 175400573 T

a score=43356.000000
s hg38.chr6_GL000254v2_alt  1162451 83 +   4827813 TCAGTCTGAACTGATGGCGGGAGATGCTGATGCTTGCTTATACTCATTCCCTGTTTATTTATTCTTCATTAATTCAATCCAAA
s panTro5.chr6             30120735 83 + 175400573 TCAGTCTGAACTGATGGCGGGAGATGCTGATGCTTGCTTATCCTCATTCCCCGTTTATTTATTCTTCATTAATCCGATCCAAT
i panTro5.chr6             T 18 C 0
s panPan2.chr6             30351410 83 + 173848474 TCAGTCTGAACTGATGGCAGGAGATGCTGATGCTTGCTTATCCTCATTCCCCGTTTATTTATTCTTCATTAATCCAATCCAAT
i panPan2.chr6             N 0 C 0
s gorGor5.CYUI01015528v1       7343 83 +   2037526 TCAGTCTGAACTGATGGCGGGAGATGCTGATGCTTGCTTATCCTCATTCCCCGTTTATGTATTCTTCATTAATTCAATCCAAA
i gorGor5.CYUI01015528v1   C 0 C 0
e otoGar3.GL873550         17456550 34 -  18854210 I
e cebCap1.NW_016107755v1     428829 57 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     167539  5 +    273075 I
e chlSab2.chr17            29332394  0 -  71996105 I
e cerAty1.NW_012002535v1     167925  5 -    863181 I
e macFas5.chr4             29884116 3584 - 170955103 I
e rheMac8.chr4             30513735  7 + 172585720 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=2259.000000
s hg38.chr6_GL000254v2_alt  1162534 6 +   4827813 CTCCCC
s panTro5.chr6             30120818 6 + 175400573 CTCCCC
i panTro5.chr6             C 0 T 71
s panPan2.chr6             30351493 6 + 173848474 CTCCCC
i panPan2.chr6             C 0 T 71
s gorGor5.CYUI01015528v1       7426 5 +   2037526 CTCCC-
i gorGor5.CYUI01015528v1   C 0 C 0
s otoGar3.GL873550         17456584 6 -  18854210 CTCCAG
i otoGar3.GL873550         I 34 C 0
e cebCap1.NW_016107755v1     428829 57 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     167539 5 +    273075 I
e chlSab2.chr17            29332394 0 -  71996105 I
e cerAty1.NW_012002535v1     167925 5 -    863181 I
e macFas5.chr4             29884116 3584 - 170955103 I
e rheMac8.chr4             30513735 7 + 172585720 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=6806.000000
s hg38.chr6_GL000254v2_alt  1162540 18 +   4827813 TCAGTCTGAACTGATGGT
s gorGor5.CYUI01015528v1       7431 18 +   2037526 TCAGTCTGAACTGATGGT
i gorGor5.CYUI01015528v1   C 0 C 0
s chlSab2.chr17            29467708 18 -  71996105 TCAGTCTGAACTGATGGC
i chlSab2.chr17            n 0 C 0
s otoGar3.GL873550         17456590 16 -  18854210 TCAGTCTGAACTGAGT--
i otoGar3.GL873550         C 0 C 0
e cebCap1.NW_016107755v1     428829 57 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     167539  5 +    273075 I
e cerAty1.NW_012002535v1     167925  5 -    863181 I
e macFas5.chr4             29884116 3584 - 170955103 I
e rheMac8.chr4             30513735  7 + 172585720 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I
e panPan2.chr6             30351499 71 + 173848474 T
e panTro5.chr6             30120824 71 + 175400573 T

a score=20886.000000
s hg38.chr6_GL000254v2_alt  1162558 21 +   4827813 GGGAGATGCTGATGCT---TGCTT
s panTro5.chr6             30120753 21 + 175400573 GGGAGATGCTGATGCT---TGCTT
i panTro5.chr6             T 71 C 0
s panPan2.chr6             30351428 21 + 173848474 AGGAGATGCTGATGCT---TGCTT
i panPan2.chr6             T 71 C 0
s gorGor5.CYUI01015528v1       7449 21 +   2037526 GGGAGATGCTGATGCT---TGCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s chlSab2.chr17            29467726 21 -  71996105 AGGAGATACTGATGCT---TGCTT
i chlSab2.chr17            C 0 n 0
s otoGar3.GL873550         17456606 24 -  18854210 AGGAGACCCTGAGTCTCTGTACTC
i otoGar3.GL873550         C 0 C 0
e cebCap1.NW_016107755v1     428829 57 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     167539  5 +    273075 I
e cerAty1.NW_012002535v1     167925  5 -    863181 I
e macFas5.chr4             29884116 3584 - 170955103 I
e rheMac8.chr4             30513735  7 + 172585720 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=81561.000000
s hg38.chr6_GL000254v2_alt  1162579 42 +   4827813 ATCCTCATTCCCCGTTTATTTATTCTTCATTAATTCAATCCA
s panTro5.chr6             30120774 42 + 175400573 ATCCTCATTCCCCGTTTATTTATTCTTCATTAATCCGATCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30351449 42 + 173848474 ATCCTCATTCCCCGTTTATTTATTCTTCATTAATCCAATCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       7470 42 +   2037526 ATCCTCATTCCCGGTGTATTTATTCTTCATTAATTCAATCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s cerAty1.NW_012002535v1     167930 42 -    863181 atcatcattccctgttcatttattcttcattaattcaatcCA
i cerAty1.NW_012002535v1   I 5 C 0
s chlSab2.chr17            29332399 42 -  71996105 ATCCtcattccttgttcatttattcttcattaattcaatcCA
i chlSab2.chr17            n 0 C 0
s manLeu1.NW_012101121v1     167544 42 +    273075 ATCATCATTCCCTGTTCATTTATTCTTCATTAATTCAATCCA
i manLeu1.NW_012101121v1   I 5 C 0
s otoGar3.GL873550         17456630 42 -  18854210 ATTCATGTTCTGGGCTCATTTATCCTTCATTCCCTCAGTCAC
i otoGar3.GL873550         C 0 C 0
e cebCap1.NW_016107755v1     428829 57 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e macFas5.chr4             29884116 3584 - 170955103 I
e rheMac8.chr4             30513735  7 + 172585720 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=59857.000000
s hg38.chr6_GL000254v2_alt  1162621 26 +   4827813 ATCTCCCCAGCAGTCACTTCACCCAG
s panTro5.chr6             30120816 26 + 175400573 ATCTCCCCAGCAGTCACTTTACCCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30351491 26 + 173848474 ATCTCCCCAGCAGTCACTTTACCCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       7512 25 +   2037526 ATCT-CCCAGCAGTCACTTCACCCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30513742 26 + 172585720 ATGTCCCTAGCAGTCACTTCACCCCA
i rheMac8.chr4             I 7 C 0
s cerAty1.NW_012002535v1     167972 26 -    863181 ATCTCCTCAGCAGTCACTTCACCCAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29332441 26 -  71996105 ATCTCCCCAGCAGTCACTTCACCCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     167586 26 +    273075 ATCTCCTCAGCAGTCACTTCACCCAA
i manLeu1.NW_012101121v1   C 0 C 0
s otoGar3.GL873550         17456672 25 -  18854210 TTCTCTCTGGCAGACACTCAGCACA-
i otoGar3.GL873550         C 0 C 0
e cebCap1.NW_016107755v1     428829 57 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=339809.000000
s hg38.chr6_GL000254v2_alt  1162647 113 +   4827813 GAAGCAGACTGACCTCTGCTCTTCATAATCAGGAAACCCCAAAGCACTCTCCATCACCTCCCTGATATCACCCTTCAGCTCTACATCATCACATGTGGGCTCTAACTCTGAA-G-
s panTro5.chr6             30120842 113 + 175400573 GAAGCAGACTGACCTCTGCTCTTCATAATCAGGAAACCCCAAAGCACTCTCCATCACCTCCCTGATATCACCCTTCAGCTCTACATCATCACATGTGGGCTCTAACTCTGAA-G-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30351517 113 + 173848474 GAAGCAGACTGACCTCTGCTCTTCATAATCAGGAAACCCCAAAGCACTCTCCATCACCTCCCTGATATCACCCTTCAGCTCTACATCATCACATGTGGGCTCTAACTCTGAA-G-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       7537 113 +   2037526 GAAGCAGACTGACCTCTGCTCTTCATAATCAGAAAACCCCAAAGCACTCTCCATCACCTCCCTGATATCACCCTTCAGCTCTACATCATCACATGTGGGCTCTAACTCTGAA-G-
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30513768 111 + 172585720 GAAGC--ACTGACCTCTACTCTTCATAATCAGGAAACCCCAAAGCACTCTCTGTCACCTCCCGGATATCA-TCTTCAGCTCTACATCATCACATGTGGGCTCCAACTCTGCAGG-
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     167998 111 -    863181 GAAGC--ACTGACCTCTACTCTTCATAATCAGGAAAGACCAAAGCACTCTCCATCCGCTCCCTGATATCACCCTTCAGCTCTACATCATCACATGTGGGCCCTAACTCTGCA-G-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29332467 111 -  71996105 GAAGC--ACTGACCTCTACTCTTCATAATCAGGAAACCGCAAAGCACTCTCCGTCACCTCCCTGATACCA-TCTTCAGCTCTACATCATCACATGTGGGCTCTAACTCTGCAGG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     167612 111 +    273075 GAAGC--ACTGACCTCTACTCTTCATAATCAGGAAAGACCAAAGCACTCTCCATCCGCTCCCTGATATCACCCTTCAGCTCTACATCATCACATGTGGGCCCTAACTCTGCA-G-
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     428886 113 -   1771730 GAAGCAGACCGATCTCTACTCTTCATAATCAGAAAACCCCAGAGCACTTTTTGTCCCCTCTGGAATATCACACTTCAGCTCTGCATTGTCACATGAGGGCTCCATCTCTGCA-G-
i cebCap1.NW_016107755v1   I 57 I 1
s otoGar3.GL873550         17456697 112 -  18854210 GCAGCAGACTGACC-CTGTTCTATAACATCAGGACAT-TCAAAGCACCTTCTGTCCCTTCCCCGACATCACAGTTGGGCTCTACATCATGACAGGAAGGCTCCAATGCTTCA-GG
i otoGar3.GL873550         C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=927885.000000
s hg38.chr6_GL000254v2_alt  1162760 250 +   4827813 GCAGGTGTCCTCCCACAGGGTCAACCCCTGAACATTGGCCCCAGATGTC--TCCCC-ATCTCTTCCCAGCCCTTTCAGTACTGCTGTGAATCTGTCCCTCACTGAGAACTGGCGGGGCGATGTGGGGGAGGAGGGGAAATTTCTTGGTGCTGTGTCAAAGCATCAAGACAGACCTCTCCTTCTCTCCTGAACCTCACACTCTATCTCTTCCCAGACACTTGAAATAAAACGCAGACCAGAAATGTCTATTTAA
s panTro5.chr6             30120955 250 + 175400573 GCAGGTGTCCTCCCACAGGGTCAACCCCTGAACATTGGCCCCAGATGTC--TCCCC-ATCTCTTCCCAGCCCTTTCAGTACTGCTGTGAATCTGTCCCTCACTGAGAACTGGCGGGGCGATGTGGGGGAGGAGGGGAAATTTCTTTGTGCTGTGTCAATGCATCGAGACAGACCTCTCCTTCTCTCCTGAATCTCACGCTCTATCTCTTCCCAGACACTTGAAATAAAACGCAGACCAGAAATGTTTATTTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30351630 250 + 173848474 GCAGGTGTCCTCCCACAGGGTCAACCCCTGAACATTGGCCCCAGATGTC--TCCCC-ATCTCTTCCCAGCCCTTTCAGTACTGCTGTGAATCTGTCCCTCACTGAGAACTGGCGGGGCGATGTGGGGGAGGAGGGGAAATTTCTTTGTGCTGTGTCAATGCATCGAGACAGACCTCTCCTTCTCTCCTGAATCTCACGCTCTATCTCTTCCCAGACACTTGAAATAAAACGCAGACCAGAAATGTCTATTTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       7650 249 +   2037526 GCAGGTGTCCTCCCACAGGGTCAACCCCTGAACATTGGCCCCAGATGTC--TCCCC-ATCTCTTCCCAGCCCTTTCAGTACTGCTGTGAATCTGTCCGTCACTGAGAACTGGCGGGGCGATGTGGGGGAGGTGGGGAGATTTCCT-GTGCTGTGTCAAAGCATCAAGACAGACCTCTCCTTCTCTCCTGAACCTCACACTCTATCTCTTCCCAGACACTTGAAATAAAACGCAGACCAGAAATGTCTATTTAA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30513879 249 + 172585720 GCAGATGTTCCCCGACATGGTCAACCCCTGAACATTGGCCCCAGATGTC---CCCC-ATCCCTTCTCAGCCCTTTCGGTGCTGCTGTGAATCTGTCCCTCACTGAGAACTGGTGGGGAGATGTGGGGGAGGAGGGGAGATTTCTCTGTGCTGCGTACAGGCATGAAGACAGACCTCTCCTTCTCTCCTGAACCTCACACTCTCTCCCTTCCCAGACTCGTAAAATAAAACACAGACCAGAAATGTATATTTAA
i rheMac8.chr4             C 0 I 84371
s cerAty1.NW_012002535v1     168109 248 -    863181 GCCGGTGTTCCCC-ACAGGGTCAACCCCTGAACATTGGCCCCAGATGTC---CCCC-ATCTCTTCCCAGCCCTTTCTGTATTGCTGTGAATCTGTCCCTCACTGAGAACTGACAGGGAGATGTGGGGGAGGAGGGGAGATTTCTTTGTGCTGTCTCAAGGCATCAAGACAGACCTCTCCTTCTCTCCTGAACCTCACACTCTCTCCCTTCCCAGACACTTGAAATAAAACGCAGACCAGAAATGTCTACTTGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29332578 248 -  71996105 GCAGATGTTCCCC-ATAGGTTCAGCCCCTGAACACTGGCCCCAGATGTC---CCCC-ATCTCTTCCCAGCCCTTTCAGTGTTGCTGTGAATCTGTCCCTCACTGAGAACTGGTGGGGAGATGTTGGGGAGGAGGGGAGATTTCTCTGTGCTGTGTCAAGGCATCAAGACAGACCTCTCCTTCTCTCCTGAACCTCACACTCTATCCCTTCCCAGACACTTGAAATAAAACGCAGACCAGAAATGTCTATTTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     167723 248 +    273075 GCCGGTGTTCCCC-ACAGGGTCAACCCCTGAACATTGGCCCCAGATGTC---CCCC-ATCTCTTCCCAGCCCTTTCTGTATTGCTGTGAATCTGTCCCTCACTGAGAACTGACAGAGCGATGTGGGGGAGGAGGAGAGATTTCTTTGTACTGTGTCAAGGCATCAAGACAGACCTCTCCTTCTCTCCTGAACCTCACACTCTATCCCTTCTCAGACACTTGAAATAAAACGCAGACCAGAAATGTCTACTTGT
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     429000 248 -   1771730 GCAGGTGTCGCCC-ACAGGGTCAGCCCATGAACATTTGCCGCAGATGTC--CCCCC-ATCCCTTCCCAGGCTTCTGGGTATTACTGTGAAGCTCTCCCTCACTGACAACTGGCGGGGAGATGTCAGGGAGGAGAGCAGATTTCTTTGTGCTGTGTCAAGGCATCAAGACAGACCTCTCCTTCATCCCTGAACCTCA-ACTCTGTTCCTTCCCAGACACTTGAAATAAAACTCAGACCAGAAATGTCTATTTAA
i cebCap1.NW_016107755v1   I 1 I 19771
s aotNan1.NW_018496904v1     111491 248 -    383796 GCAGGTGTCCCCC-ACAGGGTCAGCCC-TGAACATTTGCTGCAGATGTC--CCCCCAATCCCTTCCCAGGCCTGTCAGTGTTATTGTGAATCTGTCCCTCACTGAGAACTGGTGGGGAAATGTCAGAGGGGAGGGGAGATTTCTTTGTGCTGTGTCAAGGCATCAAGACAGACCTCTCCTTCTCCCCTGAACCTCA-ACTCTCTTTCTTCTGAGACGCTTGAAATGAAACACAGACCAGAAATGTCTATTTAA
i aotNan1.NW_018496904v1   N 0 N 0
s otoGar3.GL873550         17456809 200 -  18854210 GCAGATGCTCCCC-ACAGGGTGAGGACCCAA--CTTGGCCCCAGGGATCACCCACC-CTCCTGTCCCAGCCCTCTCTGTTTTGCTGAGAATCTGTCAGTCACCAAG--CTGGTGGGGAGATGATGGGGGAGA-----------------------------------------------TTTTTTCCTGAACCTCACACACAGTCCCTTCCCAGACACAGTAAGTGAAACACACACCAGAAATGTATATTTAA
i otoGar3.GL873550         C 0 N 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e macFas5.chr4             29884116 3584 - 170955103 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=6111.000000
s hg38.chr6_GL000254v2_alt  1163010 3 +   4827813 GAG
s panTro5.chr6             30121205 3 + 175400573 GAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30351880 3 + 173848474 GAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       7899 3 +   2037526 GAG
i gorGor5.CYUI01015528v1   C 0 C 0
s cerAty1.NW_012002535v1     168357 3 -    863181 GAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29332826 3 -  71996105 GAG
i chlSab2.chr17            C 0 I 20773
s manLeu1.NW_012101121v1     167971 3 +    273075 GAG
i manLeu1.NW_012101121v1   C 0 C 0
e cebCap1.NW_016107755v1     429248 19771 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e macFas5.chr4             29884116 3584 - 170955103 I
e rheMac8.chr4             30514128 84371 + 172585720 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=197477.000000
s hg38.chr6_GL000254v2_alt  1163013 97 +   4827813 TCAACACAATTTCTTTTTCTAGACAAGTTTCTCTT-ATTCTCAGGGCTCAGCTATGACTGTGGGTGACCAAACAACTATTCACAAAGGACAGAACTCG
s panTro5.chr6             30121208 97 + 175400573 TCAGCACAATTTCTTTTTCTAGACAAGTTTCTCTT-ATTCTCAGGGCTCAGCCATGACTGTGGGTGACCAAACAACTATTCACAAAGGACAGAGCTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30351883 97 + 173848474 TCAGCACAATTTCTTTTTCTAGACAAGTTTCTCTT-ATTCTCAGGGCTCAGCCATGACTGTGGGTGACCAAACAACTATTCACAAAGGACAGAGCTCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       7902 95 +   2037526 TCAGCACAATTTCTTTTTCTAGACAAGTTTCACTT-ATTCTCA-GGCTCAGCCATGACTGTGGGTGACCAAACAACTATTCACAAAGGACAGAGCT-G
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             29887700 98 - 170955103 TCAGGACAATTACTTTTTTTAGACAAGTTTCTCTTCCTTCTCAGGGTTCAGCCATGACTGTTGGTGACCAAACAAACGTTCACAAATGGCAGTGATCT
i macFas5.chr4             I 3584 C 0
s cerAty1.NW_012002535v1     168360 98 -    863181 TCAGGACAATTACCTTTTCTAGACAAGTTTATCTTCCTTCTCAGGGCTCAGCCATGACTGTGGGTGACCAAACAACtgtttacaaagggcagtgatct
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            42847073 97 +  71996105 TCAGGACAATTACTTTTTCTAGACAAGTTTATCTTCCTTCTCAGGGCTCAGCCATGACTGTGGGTGACCAAACAACTGTTCAC-AAGGGCAGTGATCT
i chlSab2.chr17            I 27479 C 0
s manLeu1.NW_012101121v1     167974 98 +    273075 TCAGGACAATTACCTTTTCTAGACAAGTTTATCTTCCTTCTCAGGGCTCAGCCATGACTGTGGGTGACCAAACAACtgtttacaaagggcagtgatct
i manLeu1.NW_012101121v1   C 0 C 0
e cebCap1.NW_016107755v1     429248 19771 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e rheMac8.chr4             30514128 84371 + 172585720 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=541371.000000
s hg38.chr6_GL000254v2_alt  1163110 190 +   4827813 CTTCAATGCCAGCTTATGAATCCACACCTTGCCACCTGCAGAGGTGGAAAAAGGCACCTAAATCCACGATCCAATAGTTCTTCCTGCCCTTAA-CTCCTCACACACATCTGGACACTTGGAGAGTGTGGAGGGCACCCAGGGTGCAG-GGTGGCAGTGGAGGCCTTGGGAAAACTGGCCAGGAAGCCAAGat
s panTro5.chr6             30121305 190 + 175400573 CTTCAATGCCAGCTTATGAATCCACACCTTGCCACCTGCAGAGGTGGAAAAAGGCACCTAAATCCACGATCCAATAGTTCTTCCTGCCCTTAA-CTCCTCATACACATCTGGACACTTGGAGAGTGTGGAGGGCACCCAGGGTGCAT-GGTGGCAGTGGAGGCCTTGGGAAAACTGGCCAGGAAGCCAAGat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30351980 190 + 173848474 CTTCAATGCCAGCTTATGAATCCACACCTTGCCACCTGCAGAGGTGGAAAAAGGCACCTAAATCCACGATCCAATAGTTCTTCCTGCCCTTAA-CTCCTCATACACATCTGGACACTTGGAGAGTGTGGAGGGCACCCAGGGTGCAT-GGTGGCAGTGGAGGCCTTGGGAAAACTGGCCAGGAAGCCAAGat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       7997 189 +   2037526 CTTCAATGCCAGCTTATGAATCCACACCTTGCCACCTGCAGAGGTGGAAAAAGGCACCTAAATCCACGATCCAATAGTTCTTCCTGCCCTTAA-CTCCTCACACACATCTGGACACTTGGAGAGTGTGGAGGGCACCCAGGGTGCAT-AGTGGCAGTGGAGGCCTTGGG-AAACTGGCCAGGAAGCCAAGat
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             29887798 191 - 170955103 TTTCAATGCCAGCTTATGAATCCACACCTCACCACCTCCAGAGGTGGGAAAAGGCACCTCAATCCATGATCCAATAGTTCTTCCTGCCCTTAACCTCCTCACACACATTTGGACACTCGGAGAGTGTGGAGGGCACCCAGGGTGCAT-GGTGGCAGTGGAGGCCTTGGGAAAACTGGCCAGGAAGCCAAGGA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     168458 190 -    863181 cttcaatgccagcttatgaatccacacttTGCCACCTGCAGAGGTGGAAAAAGGCACCTCAAACCACGATCCAATAGTTATTCCTGGCCTTTA-CTCCTCATGCCCATCTGGACACTCAGAGAGTGTAGAGGGCACCCAGGGTGCAT-GGTGGCAGTGGAGGCCTTGGGAAAACTGGCCAGGAAGTCAAgga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            42847170 190 +  71996105 CTTCAATGCCAGTTTATGAATTCACACATTGCCACCTGCAGAGGTGGAAAAAGGCACCTCAAACCACCATCCAATAGTTATTCCTGGCCTTTA-TTCCTCACACCCATCTGGACACTTGGAGAGTGTGGAGGGCACCCAGGGTGCAT-GGTGGTAATGGAGGCTTTGGGAAAACTGGCCAGGAAGCCAAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     168072 190 +    273075 cttcaatgccagcttatgaatccacacttTGCCACCTGCAGAGGTGGAAAAAGGCACCTCAAACCACGATCCAATAGTTATTCCTGGCCTTTA-CTCCTCATGCCCATCTGGACACTCAGAGAGTGTAGAGGGCACCCAGGGTGCAT-GTTGGCAGTGGAGGCCTTGGGAAAACTGGCCAGGAAGTCAAgga
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     449019 191 -   1771730 CTTCAATGCCAGCTTATGACTCCACTCCTTGACACCTTTGGAGATGGGAAATGGCACCTCGATCCATGATCCACTAATTCCTCCTCCCCTTAC-CTTGTCATGTGCATCAGGAACCTCGGGGAGTGTGGAGGGCACCCAGGGTGCATGGGCGGCAGTGGAGGCTTTAGGAAAACTGACCAGGAAGCCAGGGA
i cebCap1.NW_016107755v1   I 19771 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e rheMac8.chr4             30514128 84371 + 172585720 I
e nomLeu3.chr1a            74741328 60401 + 122973662 I

a score=340279.000000
s hg38.chr6_GL000254v2_alt  1163300 106 +   4827813 atgcacctcaggtgactaaa-tttttttactgttctgcacttgctggagaatgaccccaaaagAT-----AAGATCAATTTGTTGACTACCAA-CTTATTTGGCTGAGCCATG
s panTro5.chr6             30121495 106 + 175400573 atgcacctcaggtgactaaa-tttttttactgttctgcacttgctggagaatgaccccaaaagAT-----AAGATCAATTTATTGACTACCAA-CTTATTTGGCTGAGCCATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30352170 106 + 173848474 atgcacctcaggtgactaaa-tttttttactgttctgcacttgctggagaatgaccccaaaagAT-----AAGATCAATTTGTTGACTACCAA-CTTATTTGGCTGAGCCATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       8186 105 +   2037526 atgcacctcaggtgactaaa-tttttttactgttctgcacttgctggagaatga-cccaaaagAT-----AAGATCAATTTGTTGACTACCAA-CTTATTTGGCTGAGCCATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74801729 108 + 122973662 atgcacctcaggtgac-----attttttgttgttctgcacttgtctgagaatgaccccaaaagATTTTTAAAGACCAATTCTTTGGCTACCAACCCTATTTGGCCAAGTCATG
i nomLeu3.chr1a            I 60401 C 0
s macFas5.chr4             29887989 111 - 170955103 ATGCACCTCAGGTGACTAAA-TTTTTTTATACTTCTGCACTTGCTGGAGAATGACCCCAAAATATTTTTAAAGACAAATTCTTTGACTACCAA-CCTATTCAGCTGAGCCATG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     168648 106 -    863181 atgcacctcaggtgactaaa-tctttttacagttctgcacttgctggagaatgaccccaaaagAT-----AAGACCAATTTGTTGACTATCAA-CTGATTTGGCTGAGCCATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            42847360 107 +  71996105 ATGCACCTCAGGTGACTAAATTTTTTTTACAGTTCTGCACTTGCTGGAGAATGACCCCAAAAGAT-----AAGACCAATTTGTTGACTACCAA-CTGATTTGGCTGAGTCATG
i chlSab2.chr17            C 0 n 0
s manLeu1.NW_012101121v1     168262 106 +    273075 atgcacctcaggtgactaaa-tctttttacagttctgcacttgctggagaatgaccccaaaagAT-----GAGACCAATTTGTTGACTACCAA-CTGATTTGGCTGAGCCATG
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     449210 111 -   1771730 ATGAATCTTGGATGACCAAA-ATATTTTGCTATTCGGCACTGGTCATAGAAAGACCCCAAAAGATTTTTAAAGACCAATTATTTAGCAACCCA-CCTATTTGGCTGAGTCATG
i cebCap1.NW_016107755v1   C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e rheMac8.chr4             30514128 84371 + 172585720 I

a score=462296.000000
s hg38.chr6_GL000254v2_alt  1163406 135 +   4827813 GACATGGAGCAG----ATGAGCATTGCCTTTACCTATGACATGCATGAGGATTCTGAGACCTACCTGCAGCAGTTAAGCCCCACACCCAGAGGGACACCCACTCTCCCACCTCCTTACTTTCTGTATCTTTTCACACTT
s panTro5.chr6             30121601 135 + 175400573 GACATGGAGCAG----ATGAGCATTGCCTTTACCTACGACATGCATGAGGATTCTGAGACCTACCTGCAGCAGTTAAGCCCCACACCCAGAGGGACACCCACTCTCCCACCTCCTTACTTTCTGTATCTTTTCACACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30352276 135 + 173848474 GACATGGAGCAG----ATGAGCATTGCCTTTACCTACGACATGCATGAGGATTCTGAGACCTACCTGCAGCAGTTAAGCCCCACACCCAGAGGGACACCCACTCTCCCACCTCCTTACTTTCTGTATCTTTTCACACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       8291 135 +   2037526 GACATGGAGCAG----ATGAGCATTGCCTTTACCTACGACATGCATGAGGATTCTGAGACCTACCTGCAGCAGTTAAGCCCCACACCCAGAGGGACACCCACTCTCCCACCTCCTTACTTTCTGTATCTTTTCACACTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74801837 135 + 122973662 GACATGGAGCAG----GTGAAAACTGCCTTTATCTATTACATGCCTGAAGATTCTGAGACCTATGTGTATCAGGTAAGCTCCACATGCAGAGGGACACCCACTCTCCCACCCGCTTATTTTCTGTATCTTTTCACACTT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29888100 135 - 170955103 GACACGGAGCAG----GTGAACACTGCCTTTACCTATGACATGCCTGAAGATTCTGAGACCTACCTGCATCAGGTGAGCTCCACATGCAGAGGGACCCCCACTCTCCCACCTCCGTACTTTCTGTATCTTTTCACACTT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     168754 135 -    863181 GACATGGAGCAG----ATGAGCATTGCCTTTACCTATGACATGCATGAGGATTCTGAGACCTACCTGCATCAGGTGAGCTCCACACCCAGAGGGACCCCCACTCTCCCACCTCCTTACTCTCTGTATCTTTTCACACTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29353602 133 -  71996105 GACATGGAGCAG----GTGAACACTGCCTTTACCTATGACATGCCTGAGGATTCTGAGACCTGTGTAAATCAGGTAAGCTCCACAC--ACAGGGACATTCACTCTCCTACCTGCTTATTTTCTGTGTCTTTTCACACTT
i chlSab2.chr17            I 20773 I 97
s manLeu1.NW_012101121v1     168368 135 +    273075 GACATGGAGCAG----ATGAGCATTGCCTTTACCTATGACATGGAAGAGGATTCTGAGACCTACCTGCATCAGGTGAGCTCCACACCGAGAGGGACACCCACTCTCCCACCTCCTTACTTTCTGTATCTTTTCACACTT
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     449321 137 -   1771730 GACATGGAGAGGATGAATGAACACTGTCTTTACCTATGACATACCTGAGGACTC--AAGACTACATCCATCAGGTAAGCCCCACACCCAGAAAGACACCCACTCTCCCACCTCCTTACATTTTGTATCTTTTCACACTT
i cebCap1.NW_016107755v1   C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e rheMac8.chr4             30514128 84371 + 172585720 I

a score=210270.000000
s hg38.chr6_GL000254v2_alt  1163541 82 +   4827813 TATATCCTCATCCTTCCCTCTGAGAGTCTTCCCTCTTT-GGGTCTTCTAGTCCTATCCTACCCTCTATCCCCTTCCAGGTGGC
s panTro5.chr6             30121736 82 + 175400573 TACATCCTCATCCTTCCCTCTGAGAGTCTTCCCTCTTT-GGGTCTTCTAGTCCTATCCTACCCTCTATCCCCTTCCAGGTGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30352411 82 + 173848474 TACATCCTCATCCTTCCCTCTGAGAGTCTTCCCTCTTT-GGGTCTTCTAGTCCTATCCTACCCTCTATCCCCTTCCAGGTGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       8426 82 +   2037526 TACATCCTCATCCTTCCCTCTGAGAGTCTTCCCTCTTT-GGGTCTTCTAGTCCTATCCTACCCTCTATCCCCTTCCAGGTGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74801972 78 + 122973662 CACATCCTCATCCCTCCCTCTGGCTGTCTTCCCTCTTTGGGGTCTTCTAG-----TCCTACCCTCTGTCTCCTTCCAGGTGAC
i nomLeu3.chr1a            C 0 I 19
s macFas5.chr4             29888235 78 - 170955103 TACATCCTCATCCCTGTCTCTGAGAGTCTTCCCTCTTTGGAGTCTTCTAG-----TCCTATCCTCTGCCTCCTTCCAGATGGC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     168889 78 -    863181 TACACCCTCATCCCTCCCTCTGGGAGTCTTCCCTCTTTGGGGTCTTCTAG-----TCCTGCCCTCTGTCTCCTTCCAGGTGGC
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     168503 78 +    273075 TACACCCTCATCACTCCCTCTGAGAGTCTTCCCTCTTTGGGGTCTTCTAG-----TCCTAACCTCTGTCTCCTTCCAGGTGGC
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     449458 78 -   1771730 TACATCCTCATCCCGCCCTCTGGGTGTCTTCTCGTTTTGGGATCTACTAG-----TCCCACCCTCTGTCTCCTTCCAGGTGGC
i cebCap1.NW_016107755v1   C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e chlSab2.chr17            29353735 97 -  71996105 I
e rheMac8.chr4             30514128 84371 + 172585720 I

a score=1082597.000000
s hg38.chr6_GL000254v2_alt  1163623 342 +   4827813 ACAGGGCTTGACCATCACATTTGTGTCAGGTGACAATAATGCCAGGATCCTCAG-T-ATGGGCAGCATCGCTTTGAGGTCAGTGATAGTGAGCTGCCTGATGAGACAGACATCTCCTCCACAGTGAGTGCTGATGTCATGAAGCCCTTTAGTTCTTCCTAGTTCCTTAATA----TGTTTGTCTTCAATCCT---------GTCATGGGCACCTGATGCATAATGGACACTTGGCTGCTTCATGCACCCTGGTCTTTGATGCCGTGTTGGGATGTTTTTCTGACCGTTATGTGGGGTATCTGTTTTCTTTCATCATATTACATCTCTTCCCCCACTCCCAAGTCTGTCCTCTGAACC
s panTro5.chr6             30121818 342 + 175400573 ACAGGGCTTGACCATCACATTTGTGTCAGGTGACAATAATGCCAGGATCCTCAG-T-ATGGGCAGCATCGCTTTGAGGTCAGTGATAGTGAGCTGCCTGATGAGACAGACATCTCCTCCACAGTGAGTGCTGATGTCATGAAGCCCTTTAGGTCTTCCTAGTTCCTTAATA----TGTTTGTCTTCTATCCT---------GTCATGGGCACCTGATGCATAATGGACACTTGGCTGCTTCATGCACCCTGGTCTTTGATGCCGTGTTGGGATGTTTTTCTGACCGTTATGTGGGGTATCTGTTTTCTTTCATCATATTACATCTCTTCCCCCACTCCCAAGTCTGTCCTCTGAACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30352493 342 + 173848474 ACAGGGCTTGACCATCACATTTGTGTCAGGTGACAATAATGCCAGGATCCTCAG-T-ATGGGCAGCATCGCTTTGAGGTCAGTGATAGTGAGCTGCCTGATGAGACAGACATCTCCTCCACAGTGAGTGCTGATGTCATGAAGCCCTTTAGGTCTTCCTAGTTCCTTAATA----TGTTTGTCTCCTATCCT---------GTCATGGGCACCTGATGCATAATGGACACTTGGCTGCTTCATGCACCCTGGTCTTTGATGCCGTGTTGGGATGTTTTTCTGACCGTTATGTGGGGTATCTGTTTTCTTTCATCATATTACATCTCTTCCCCCACTCCCAAGTCTGTCCTCTGAACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       8508 339 +   2037526 ACAGGGCTTGACCATCACATTTGTGTCAGGTGACAATAATGCCAGGATCC-CAG-T-ATGGGCAGCAT-GCTTTGAGGTCAGTGATAGTGAGCTGCCTGATGAGACAGACATCTCCTCCACAGTGAGTGCTGATGTCATGAAGCCCTTTAGGTCTTCCTAGTTCCTTAATA----TGTTTGTCTTCAATCCT---------GTCATGGGCACCTGATGCATAATGGACACTTGGCTGCTTCATGCACCCTGGTCTTTGATGCCGTGTTGGGATGTTTTTCTGACCTTTACGTGGGGTATCTGTTTTCTTTCATCATATTACATCTCTTCCCCCACT-CCAAGCCTGTCCTCTGAACC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74802069 347 + 122973662 ACAGGGCTTGGTCATCACGCTTGTGTTGGATGTGAATGATGCCAGGATCCTCAGAG-ATGGGCAGCATCGCTTTAAGTTCAGTGTTAGTGAGCTGACTGATGAGACAGATGTCTCCTCCACAGTGAGTGCTGATTTCATGAAACCC-TTAGTTCCTCCCTATTCCTTACTG--------TGTCTTCAGTCCCATCATGTAGGTCATGGGCACTTAACACATAATGAACAATTGAATGGTTCATGCCCCCTGGCCTTTGATGCTGTGTTGGGATGTTTTGCTGGCCTCTGTGTGGCATCTCTATCTTCTCTCATCATATTACATCTCTTCCCCCACCCCCAAGTCCATCCTCTGAACC
i nomLeu3.chr1a            I 19 C 0
s macFas5.chr4             29888313 348 - 170955103 ACATGGCTTGGCCATCACGTTTTTATCAGATGAGAATGATACCAGCATCCTCAG-T-ATGGGCAG-ATCCCCTTGAGGTCAGTGTTA-GGAGCTGTCTGATGAGACAGGCATCTCCTCCACAGTGAGTGCTGATCTCAGGAAGCCCTTTAGGTCCTCCTAGTTCCTTAGTA----TGTTTGTCTTCAATCCTGTCATGTAGGTCATGGGCACCTCATGCATAATGGACACTTGACTGGTTCATGC-CTGTGGTCTTTCATGCTGTGTTGGGATTTTTTTCTGACCCTGATGTGGGGTATCTGTCTTCTCTCATCATACAACATCTCTTTCCCCACTCTCAAGTCTGTCCTCTGAACC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     168967 354 -    863181 ACATGGCTTGGCCATCATGTTTGTGTCAGGTGACAATGATGCCAGGATCTTCAG-T-ATGGGCAGCATTGCTTTGAGGTCAGTGATACTGAGTTGCCTGATGAGACAGACGTCTCCCCCATAGTGAGCTTTGATCTCATGAAATCCTTTAGGTCCTCCTAGTTCCTTAATATGTTTGTTTGTCTTCAATCCTGTCATGTAGGTCATGGGCACCTGATGCATAATGGACACTTGGCTGGTTCATGCACCCTGGTCTTTGAT-CTGTGTTGGGATGTTTTTCTGACCTTTATGTGGGGTCTCTGTTTTCTTTCATCATATTACATCTCTTCCCCCACTCCCAACTCCGTCCTCTGAACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29353832 346 -  71996105 ACAGGGCTTGGCCATCACGTTTGCATCAGATGAGAATGATGCCAGGATCCTCAG-TGATGGGCAGCATTGCTTTGAGGTCAGTGTTA-GGAGCTGCCTGATGAGACAGACGTCTCCTCCACAGTGAGTGCTGATCTCATGAAA-CCCTTAGGTCCTCCCTGTTCCTTACTG--------TGTCTTCAATCCCATCACGTAGGGCATGAGCACCTAATGCATAATGGACACTTGACTGGTTCATGCCCCCTGGCCTTTGATGCTGTGTTGGGATGTTTTCCTGGCCTCCATGTGGGGTATCTGTTTTCTCTCATCATATTACATCTCTCCCCCAACCTGCAAGTCCATCTTCTGAACC
i chlSab2.chr17            I 97 C 0
s manLeu1.NW_012101121v1     168581 354 +    273075 ACATGGCTTGGCCATCATGTTTGTGTCAGGTGACAATGATGCCAGGATCTTCAG-T-ATGGGCAGCATTGCTTTGAGGTCAGTGATACTGAGTTGCCTGATGAGACAGACATCTCCCCCATAGTGAGCTTTGATCTCATGAAATCCTTTAGGTCCTCCTAGTTCCTTAATATGTTTGTTTGTCTTCAATCCTGTCATGTAGGTCATGGGCACCTGATGCATAATGGACACTTGGCTGGTTCATGCACCCTGGTCTTTGAT-CTGTGTTGGGATGTTTTTCTGACCTTTATGTGGGGTCTCTGTTTACTTTCATCATATTACATCTCTTCCCCCACTCCCAACTCCGTCCTCTGAACC
i manLeu1.NW_012101121v1   C 0 M 1515
s cebCap1.NW_016107755v1     449536 343 -   1771730 -CAGAGCTGG-----CA-GTGTGTGTCTGATGAGAATAAAGCCAGGATCCTCAG-TGATGAGCAGCATCATGTTGAGATCAGTGTTA-GGAGCTGCCTGATGAGACAGACGTCTCCTCCACTGTGAGTGCTGAGCTCATGGAACCC-TGAGGTCCTCCCTGTTTCTTAGTG----TGTTTGTCTTCAATCCCATCACCTAGGTCATGGGCACCTGATGCATAATGGACACGTGACTGGTTCATGCCCCCTGGACTTCGATGCTCTGTTGGGATGTTTTCCTGGCCTCTATGTGGAGACTCTTTCTTCTCTCATCATATTATGTCTCTCTCCCCACCACCAAGAACGTCCTCTGACCC
i cebCap1.NW_016107755v1   C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e rheMac8.chr4             30514128 84371 + 172585720 I

a score=371862.000000
s hg38.chr6_GL000254v2_alt  1163965 141 +   4827813 CACACAGTACACCAGCATCTGCATGTGTGCCGTGTGCTCCTGCCTCACTTTTTCCTTTTCATTCCTTATTCTCACCATGCCACATTTTCCCCTTAGTTGAACAGACACAGTAGGGGACTAGCCCATTCTGGCATGTGACCA
s panTro5.chr6             30122160 141 + 175400573 CACACAGTACACCAGCATCTGCATGTGTGCCGTGTGTTCCTGCCTCACTTTTTCCTTTTCATGCCTTATTCTCACCATGCCACATTTTCCCCTCAGTTGAACAGACACAGTAGGGGACTAGCCCATTCTGGCATGTGACCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30352835 141 + 173848474 CACACAGTACACCAGCATCTGCATGTGTGCCGTGTGTTCCTGCCTCACTTTTTCCTTTTCATGCCTTATTCTCACCATGCCACATTTTCCCCTCAGTTGAACAGACACAGTAGGGGACTAGCCCATTCTGGCATGTGACCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       8847 140 +   2037526 CACACAGTACACCAGCATCTGCATGTGTGCTGTGTGTTCCTGCCTCACTTTTTCCTTTTCATGCCTTATTCTCA-CATGCCACATTTTCCCCTCAGTTGAACAGACACAGTAGGGGACTAGCCCATTCTGGCATGTGACCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74802416 141 + 122973662 CAGGCAGTACACCAGCATCCACATGTGTGCTGTGTGCTCCTGCCTCGCTTTGTCCTTTTCATGCCTTATTCTCACTGTGCCATGTTTCCTCCTCAGTTGAACAGACGCAGTAGGAGACTTGCTCATTCTGGAATGTGACCA
i nomLeu3.chr1a            C 0 I 4
s macFas5.chr4             29888661 140 - 170955103 CGCACAGTACACCAGCATCTGCATGTGTGCCATGTGTTCATGTCTCATTTTCAGCTTTTCATGCCTTATTCTGACCATGCCACA-TTTCCCCTCAGTTGAACAGACACGATAGGGGACTCACCCATTCTGAAATGTGACCA
i macFas5.chr4             C 0 I 4
s cerAty1.NW_012002535v1     169321 138 -    863181 CACACAGTACACCAGCCTCTGCAGGTGTGCCATGTGTTCCTGCCTCACTTCTTCCTTTTCATGCCTTATTCTCACCATACCACATTTTCCCCTCAGTTGAACAGACATAGTAGGGGACTCACCCATTCTGGAATGTGA---
i cerAty1.NW_012002535v1   C 0 I 3
s chlSab2.chr17            29354178 141 -  71996105 CAGGCAGTACACCAGCGTCTGCATGTGTGCCATGTGTTCCTGCCTTGCTTTGTCCTTTTCATGCCTTATTCTGACTGTGCCATGTTTCCTCCTCAGTTGAACAGAAGTGGTAGGAGACTCGCTCATTCTGGAATGTGACCA
i chlSab2.chr17            C 0 N 0
s cebCap1.NW_016107755v1     449879 140 -   1771730 CACACAGTACACCAGCACCTGCGTGTGTGCCGTATGTTTCTGCCTCA-TTTCCCCTTTTCATTCCTTACTCTGACTGTGTCACATCTTCCTCTCAGTTGAACAGACATGATACAAGACCCTCCCATTCTGGAATGTGACCA
i cebCap1.NW_016107755v1   C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     168935 1515 +    273075 M
e rheMac8.chr4             30514128 84371 + 172585720 I

a score=31824.000000
s hg38.chr6_GL000254v2_alt  1164106 17 +   4827813 ----CGCTTCAGGAGGAGACT
s panTro5.chr6             30122301 17 + 175400573 ----TGCTTCAGGAGGAGACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30352976 17 + 173848474 ----TGCTTCAGGAGGAGACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       8987 17 +   2037526 ----CTCTTCAGGAGGAGACT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74802561 17 + 122973662 ----CCCTTCAGGAGAGGACA
i nomLeu3.chr1a            I 4 C 0
s macFas5.chr4             29888805 17 - 170955103 ----CCCTTCAGGAGAGGACA
i macFas5.chr4             I 4 I 399
s cerAty1.NW_012002535v1     169462 17 -    863181 ----CCCTTCAGGAGGGGACA
i cerAty1.NW_012002535v1   I 3 C 0
s cebCap1.NW_016107755v1     450019 21 -   1771730 TCTGTCCTTCAGGAGAGGACA
i cebCap1.NW_016107755v1   C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     168935 1515 +    273075 M
e rheMac8.chr4             30514128 84371 + 172585720 I

a score=847020.000000
s hg38.chr6_GL000254v2_alt  1164123 397 +   4827813 GCAGGTTGGGGGTGAAGGAGACTCTACTGACCCCACCCCTGACATCCTCTTCCCCCACCCCCTGGCTTCTGTCCTCTGCCTCAGCACCACTCCTGAACCCCCATTCCTGATTGTCAGAATTTTTAACATAACTAAAAATGAAACACAAGTGCATCTGCATTATGTGTGGGTGCTCTCTCCCTTTATTTTATTTGGGGTGAGGTTATTTTAGGGCATGGCCCAGGGTAAATTCCTGTAAGGCCTTGGTGCCCTGCTGTGAGGTCAAAGAGGGATGGGACTAAGACTGCAGAGCCCTGGCTCCCCCACTACCTGCCAATTGCCAG-CCCTTTG-TGG-GGTCTCTTCTGCTTTCTCTGGCCTGGGAGATGCTGGGGTGTTTCTGATCCTGGGGCTCC--T-GGGG
s panTro5.chr6             30122318 399 + 175400573 GCAGGTTGGGGGTGAAGGAGACTCTACTGACCCCACCCCTGACATCCTCTTCCCCCACCCCCTGGCTTCCGTCTTCTGCCTCAGCACCACTCCTGAACCCCCATTCCTGATTGTCAGAATTTTTAACACAACTAAAAATGAAACACAAGTGCATCTGCATTATGTGTGGGTGCTCTCTCCTTTTATTTTATTTGGGGTGAGGTTATTTTAGGGCATGGCCCAGGGTAAATTCCTGCAAGGCCTTGGTGCCCTGCTGTGAGGTCAAAGAGGGATGGGACTAAGACTGCAAAGCCCTGGCTCCCCCACTACCTGCCAATTGCCAGCCCCTTTG-TGG-AGTCTCTTCTGCTTTCTCTGGCCTGGGAGATGCTGGGGTGTTTCTGATCCTGGGGTTCC--TGGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30352993 399 + 173848474 GCAGGTTGGGGGTGAAGGAGACTCTACTGACCCCACCCCTGACATCCTCTTCCCCCACCCCCTGGCTTCCGTCTTCTGCCTCAGCACCACTCCTGAACCCCCATTCCTGATTGTCAGAATTTTTAACACAACTAAAAATGAAACACAAGTGCATCTGCATTATGTGTGGGTGCTCTCTCCTTTTATTTTATTTGGGGTGAGGTTATTTTAGGGCATGGCCCAGGGTAAATTCCTGCAAGGCCTTGGTGCCCTGCTGTGAGGTCAAAAAGGGATGGGACTAAGACTGCAGAGCCCTGGCTCCCCCACTACCTGCCAATTGCCAGCCCCTTTG-TGG-AGTCTCTTCTGCTTTCTCTGGCCTGGGAGATGCTGGGGTGTTTCTGATCCTGGGGTTCC--TGGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       9004 394 +   2037526 GCAGGTTGGGGGTGAAGGAGACTCTACTGACCCCACCCCTGACATCCTCTTCCCCCA-CCCCTGGCTTCCGTCCTCTGCCTCAGCACCACTCCTGAACCCCCATTCCTGATTGTCAGAATTTTCAACATAACTAAAAATGAAACACAAGCGCATCTGCATTATGTGTGGGTGCTTTCTCCCTTTA-TTTATTT-GGGTGAGGTTATTTTAGGGCATGGCCCAGGGTAAATTCCTGCAAGGCCTTGGTGCCCTGCTGTGAGGTCAAAGAGGGATGGGACTAAGACTGCAGAGCCCTGGCTCCCCCACTACCTGCCAATTGACAG-CCCTTTG-TGG-GGTCTCTTCTGCTTTCTCTGGCCTAGGAGATGCTGGGGTGTTTCTGATCCTGGGGCTCC--T-GGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74802578 397 + 122973662 GCAGGGTGGGGGTGAAGGAGACCCTGCTGCCCCCACCCCTGACAGCCACCACCACCACCCCCTGGCTTTCCTCTTCTGCATCAGCACCACTCCTGAA-CCCCATTCCTGATTGTCAGAATTTTTAATGTAACTAAAAATGAAACACAAATGCATCTGCATTATGTGTGGGTGCTCTCTCGTTTTATTGTATTTGGGGTGAGGTTATTTTAGGGCATGGTCCAGGATAAATTCCTGTAAGGCCTGAGTGTCCTGCTGCGAGGTCAAAGGGGGATGGGACTAAGACTGCAGAGCCCTGGCTCCCCCACTACCTGCCAATTGCCAG-TCCTTTGTTGG-GGTCTCTTCTGCTTTATATGGCCCGAAAGAGACTGGGATGTTTCTGATCCCGGGGTTTC--T-GGGG
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29889221 387 - 170955103 GCAGAGTAGCGGTGAAGGAGACCGTGCTACCCCCACCCCTGACGTCGTCTTCCCCCACCCCCTGGTTTCCCTCTTCTGCATCAGCACCAC--------------TCCTGATTGTCAGAATGTTTAACATAGCTAAACATGAAACACAAGTGCATCTGCATTATGTGTGGGTGCTCTCTCATTTTATTGTATTTGGGGTGAGGTTATTTTAGGGCATGGTCCAGGGTAAATTCCTGTAAGGCCTGGGTGCCCTGCTGTGAGGTCAAAGGGGGATGGGACTAAGACTGCAGAGCCCTGACTCCCCAACTACCTGCCAATTGCCTG-CCCTTTG-TGGAGGTCTCTTCTGCTTTCCCTGGCCTGGGAGAGGCTGGGGTGTTTCTGATCCTGGGGTTCCTGTGGGGG
i macFas5.chr4             I 399 C 0
s cerAty1.NW_012002535v1     169479 399 -    863181 GCAGGTTGGGGATGAAGGAGACCCTACTGACCCCACCCCTGACATCCTCTTCCCCGACCCCCTGGCTTCCGTCTTCTGCATCAGCACCACTCCTGAACCCCCATTCCTGATTGTCAGAATTTTCAACATCACTAAAAATGAAACATAAATGCATCTGCAGTATGTGTGGGTGTTCTCTCCCTTTATTGCATTTGGAGTGAGTTTATTTTACGGCACGGTCCAGGGTAAATTCCTGTAAGGCCTGGGTGCCCTGCTGTGAGGTCAAAGGGGGATGGGACTAAGACTGCAGAGCCCTGGCTCCCCCGCTACTTGCCAATTGCCGG-CCCTTTG-TGGGGGTCTCTTCTGCTTTCTCTGGCCTGGGAGACGCTGGGGTGTTTCTGATCCTGGGGCTCC--TGGGGG
i cerAty1.NW_012002535v1   C 0 C 0
s cebCap1.NW_016107755v1     450040 384 -   1771730 -CCAGGGGGGTGTGATGGAAAATCTACT--CCCCTCCTCTGACA-------CCCCCACCCTCTGGCTTC---CTTCTGTATCAGCACCACTCCTGAACCCCCATTCCTGATTGTCAGAATTTTCATCGTACCTAAAAATGAAACACAAGTGCCTCTGTATTATGTGTGGGTGCTGTCTTGTTTTACTGTATTTGGGGTGAGGTTATTTTAGGATATGGTCCAGGGTAAATTCCTGTGAGGCCTGGGTGCCCTGTTGTGAGGTCAGAGGGGGATGGGACTAAGACTGCAGAGCCCTGACTCCCC-ACTACCTGCCAATTGCTGG-CCCTTTG-TGGGGGTCTCTTCAGCTTTCTCTGACCTGAGAGAGGCTGGGGTGTTTCTGATCCTGGGGCACC--T-GGGG
i cebCap1.NW_016107755v1   C 0 I 32
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     168935 1515 +    273075 M
e rheMac8.chr4             30514128 84371 + 172585720 I

a score=54225.000000
s hg38.chr6_GL000254v2_alt  1164520 35 +   4827813 GTGGTGCACATTAGTTCCAGGCATGGAGGGTGCTG
s panTro5.chr6             30122717 35 + 175400573 GTGGTGCACAATAGTTCCAGGCATGGAGGGTGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30353392 35 + 173848474 GTGGTGCACAATAGTTCCAGGCATGGAGGGTGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       9398 35 +   2037526 GTGGTGCACATTAGTTCCAGGCATGGAGGGTGCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74802975 35 + 122973662 GTGGCACACAGTATTTCCAGGGATAGAGGGTGCTG
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29889608 35 - 170955103 GCGGTGGGCAGTATTTCCAGGGATGGAGGGTGCCG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     169878 35 -    863181 GTGGTGCACATTAGCTCCAGGGATGGGGGTTGCTG
i cerAty1.NW_012002535v1   C 0 C 0
e cebCap1.NW_016107755v1     450424 32 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     168935 1515 +    273075 M
e rheMac8.chr4             30514128 84371 + 172585720 I

a score=614795.000000
s hg38.chr6_GL000254v2_alt  1164555 328 +   4827813 TGGGCACTGCTGGGAAGCTTGGGTGTCCCCTCCCAGGCTCTCTCCTCCCAGGCTCTCTCAGTGCCTCCTCATCTGTTTCTTTAGCTTTTGGATCTTGAGCACCAGGGCCTGG-GCCC-CCACCGACTCCTTCCCTTCCAGGAGGGCCTGGTCCAGCTCCAGCTGCTGTGCAAGCAACTCCTCAGCTTGGGCCAGCTCAGCTGTGTGGGGGGCTCAGGGCCCTGGTCAGAGGGAGTGGAGGAGGGAGCATCAGCCAGGGTAGAGGGGTTGAGGCCCTTGGAACCTGTGTTGCAAGATCTCATGGTAAGTGAGGAATTCGACCTCGTTTTCT
s panTro5.chr6             30122752 313 + 175400573 TGGGCACTGCTGGGAAGCTTGGGTGTCC---------------CCTCCCAGGCTTTCTCAGTGCCTCCTCATCTGTTTCTTTAGCTTTTGGATCTTGAGCACCAGGGCCCGG-GCCC-CCACCCACTCCTTCCCTTCCAGGAGGGCCTGGTCCAGCTCCAGCTGCTGTGCAAGCAACTCCTCAGCTTGGGCCAGCTCAGCTGTGTGGGGGGCTCAGGGCCCTGGTCAGAGGGAGTGGAGGAGGGAGCATCAGCCAGGGTAGAGGGGTTGAGGCCCTTAGAACCTGTGTTGCAAGATCTCATGGTAAGTGAGGAATTCGACGTCGTTTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30353427 313 + 173848474 TGGGCACTGCTGGGAAGCTTGGGTGTCC---------------CCTCCCAGGCTCTCTCAGTGCCTCCTCATCTGTTTCTTTAGCTTTTGGATCTTGAGCACCAGGGCCCGG-GCCC-CCACCCACTCCTTCCCTTCCAGGAGGGCCTGGTCCAGCTCCAGCTGCTGTGCAAGCAACTCCTCAGCTTGGGCCAGCTCAGCTGTGTGGGGGGCTCAGGGCCCTGGTCAGAGGGAGTGGAGGAGGGAGCATCAGCCAGGGTAGAGGGGTTGAGGCCCTTAGAACCTGTGTTGCAAGATCTCATGGTAAGTGAGGAATTCGACGTCGTTTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       9433 324 +   2037526 TGGGCACTGCT-GGAAGCTTGGGTGTCCCCTCCCAGGCTCTCTCCTCCCAGGCTCTCTCAGTGCCTCCTCATCTGTTTCTTTAGCTTTTGGATCTTGAGCACCAGGGCCCGG-GCCC-CCACCCACTCCTT-CCTTCCAGGAGGGCCTGGTCCAACTCCAGCTGCTGTGCAAGCAACTCCTCAGCTTGGGCCAGCTCAGCTGTGT-GGGGGCTCAGGGCCCTGGTCAGAGGGAGTGGAGGAGGGAGCATCAGCCAGGGTAGAGGGGTTGAGGCCCTTGGAA-CTGTGTTGCAAGATCTCATGGTAAGTGAGGAATTCGACCTTGTTTTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74803010 311 + 122973662 TGGGCACTGGTGGGAAGCTTGGGTGTCT---------------CCACCCAGGCTCTCTTGGTGCCTCCTCATCTGTTCCTTCAGCTTCTGGATCTTGAGCCCCAGGGCTTCA-GCCC-TAACCCCCTCCTGCCCTCCCAGCAGGGCCTCATCCAGCTCCACCTGCTGCTCCAGCAACTCCTCAGCTTGGGCCAGCTCAGCTGTGTGGGGGGCTCACGGCCCTGTTGAGGGGCAGTGGTGGAGGGAGCATCAGCCAGGGTAG-GGGGCTGAGGCCCTTGGAACCTGTGTTGCAGGGTCTGGCTATAAATGAGGAATTCGACCTC-TTTTCT
i nomLeu3.chr1a            C 0 M 19917
s macFas5.chr4             29889643 306 - 170955103 GGGGCATCGGTGGGAAGCTTGGGTG---------------TCTGCTCCCAGGTTCTCTCAGTGCCTCTTCATCTGTTTTTTCAGCTTTTGGATCTTGAGCACCAGAGCCTGG-GCCCACCACCCCCTCCTGCCCTTCCAGCAGGGCCTGGTCCAGCTCCAGCTGCTGCTCTAGCAGCTCCTCAGCTTTGGCCAGCTCAGCTGTGTTGGGGGCTCAGGATCCTGGTGAGAGGGAGTGGGGGAGGGAGCATGAGCCAGGGAAG-GGGGCTGAGGCCTTAGGAAGCTGTG-------GTCTGGCTGCAAGTGAGGAATTCAGCCTCCCTTTCT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     169913 326 -    863181 TGGATACTGGTGGGAAGCTTGGATGTCTCCTCCCAGGCTCTCTCCTCCCAGGCTCTCTCAGTGCCTCCTCATCTGTTTCTTTAGCTTTTGGATGTTGAGCACCAGGGCCTCG-GCCC-CCACCCACACCTTCCCTTCCAGGAGGACCTGGTCCAGCTCCAGCTGCTGCTCAAGCAACTCCTCAGCTTGGGCCAGCTCAGCTGTGTCTGGGGCTCAGGGCCCTGGTGAGAGGGAGTGGGGGA-GGAGCATCAGCCAAGGCAG-GAGGCTGAAGCCCTTGGAACCTGTGTTGCAAAGTCTCATGGTAAGTGAGGAATCTGATCTCCCTTTCT
i cerAty1.NW_012002535v1   C 0 C 0
s cebCap1.NW_016107755v1     450456 310 -   1771730 TGGGCACTGGTGGGAAGCTTGGCTGTCT---------------CCTCCCAGGCTCTCTCAGTGCCTCCTCATCTGTTCCTTCAGCTTCTGGATGTTGAGCACACGGGCCTGGTGCCC-CCACTCCCTCCTGCCCTTCCAGCAGGGCCTGGCCCAGCTCCAGCAGCCGCACCAGCAACTCCTCA-CTTGGGCCAGCTCAGCTGTATGGCGGGTCCTGGGCCCTGGTGAG-GAAAGTTAGGGAGGGAGCATCAGCCGGGGCA--GGTGTTGAGCCCCTGGGAACCTGTGCTGCAGGGTCTGGGTGTAAGGAAGGAATTGGACCCCCCTGTCT
i cebCap1.NW_016107755v1   I 32 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     168935 1515 +    273075 M
e rheMac8.chr4             30514128 84371 + 172585720 I

a score=188941.000000
s hg38.chr6_GL000254v2_alt  1164883 125 +   4827813 CTTTTTCCAGCCCATTAGCTTAAGTCCACCTGTAGTGAGAATCCCAGGGAGCAACCTGTCTTGGGCATAGGCCTC--TGGAG-GGCAGATACAGATCCCTGGCTCAGGGGCTATATCTGGATGCCTTG
s panTro5.chr6             30123065 125 + 175400573 CTTTTTCCAGCCCATTAGCTTAAGTCCACCTGTACTGAGAATCCCAGGGAGCAACCTGTCTTGGGCATAGGCCTC--TGGAG-GGCAGATACAGATCCCTGGCTCAGGGGCTATATCTGGATGCCTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30353740 125 + 173848474 CTTTTTCCAGCCCATTAGCTTAAGTCCACCTGTACTGAGAATCCCAGGGAGCAACCTGTCTTGGGCATAGGCCTC--TGGAG-GGCAGATACAGATCCCTGGCTCAGGGGCTATATCTGGATGCCTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       9757 124 +   2037526 -TTTTTCCAGCCCATTAGCTTAAGTCCACCTGTACTGAGAATCCCAGGGAGCAACCTGTCTTGGGCATAGGCCTC--TGGAG-GGCAGATACAGATCCCTGGCTCAGGGGCTATATCTGGATGCCTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             29889949 125 - 170955103 CTTTTTCCAGCCCATTAGCTTAAGTCCACCTGTACCGAGAAGTCCAGGGAACTCCCTGTCTCGGGCATAGGCTTC--TGCAG-GGCAGGTAGAGATCGCTGGATCAGGGATTGTAACTGGACGCCTTC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     170239 127 -    863181 CTTTTTCCAGCCCATTAACTTACGTCCACCTGTACTGAGAATCCCAGGGAGCAACCTGTCTTGGGCATAGGCCTCTATGGGG-GGCAGATACAGATCCCTGGCTCAGGGGCTATATCTGGATGCTTTG
i cerAty1.NW_012002535v1   C 0 C 0
s cebCap1.NW_016107755v1     450766 108 -   1771730 CCTTTTCTAGCCCGTTAGCTTAAG------------------CCCAAGGAGCTCCCTGTCTTTAGTATAGGCCTT--TGGAGAGACTGATAGAGATCTCTGGCTGAGGGTCTTTATTTGGATGCTTTG
i cebCap1.NW_016107755v1   C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     168935 1515 +    273075 M
e rheMac8.chr4             30514128 84371 + 172585720 I
e nomLeu3.chr1a            74803321 19917 + 122973662 M

a score=231807.000000
s hg38.chr6_GL000254v2_alt  1165008 113 +   4827813 AATGAGGATATGGGGTCACCGGAAAGAGACAACCAGGTGTCTGTCCCCACTAATAAATGATTAACTGTTAGATGAGGGGGAATTCCTGTTCAAGGA---CTc--tggactgtgctgct
s panTro5.chr6             30123190 113 + 175400573 AATGAGGATATGGGGTCACTGGAAAGAGACGACCAGGTGTCTGTCCCCACTAATAAATGATTAACTGTTAGATGAGGGGGAATTCCTGTTCAAGGA---CTC--TGGACTGTGCTGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30353865 113 + 173848474 AATGAGGATATGGGGTCACTGGAAAGAGACGACCAGGTGTCTGTCCCCACTAATAAATGATTAACTGTTAGATGAGGGGGAATTCCTGTTCAAGGA---CTC--TGGACTGTGCTGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       9881 113 +   2037526 AATGAGGATATGGGGTCACTGGAAAGAGACGACCAGGTGTCTGTCCCCACTAATAAATGATTAACTGTTAGATGAGGGGGAATTCCTGTTCAAGGA---CTC--TGGACTGTGCTGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74823238 114 + 122973662 AACAAAGATATGGGGTCAATGGAAAGA-AGGACCGGCTGTCCCTCCCCACTAAGAAATGATTAACTTTTAGATGAGGGGGAATTCCTGTTCAAGGA---CTCTGTGGACTGTGCTGCT
i nomLeu3.chr1a            M 19917 C 0
s macFas5.chr4             29890074 116 - 170955103 GACAAGGATATGGGGTCACTGGAAAAAGATGACTGACTGTCCCTCCCCACTAAGAAATAATTAACTGTTCGATGAGGGGTTATTCCTGTTCAAGAAAATCTC--TGGACTGTGCTGCT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     170366 113 -    863181 AACCAAGACATGAGGTCACTGGAAAGAGAGGACCAGCTGTCTCTCCCCACTGAGAAATAATTAACTGTTAGATGAGGGGGATTTCCTGTTCAAGGA---CTc--tggactgtgctgct
i cerAty1.NW_012002535v1   C 0 C 0
s cebCap1.NW_016107755v1     450874 114 -   1771730 AACAAGGATAGGGGGTCCCTGGAAAGAGAGGACCAGCTGTCCCTCACCAGTAAGAAATAATTAAGTGTTAGATG-GGGAGAATTCCTGTTCAAGGA---CTTTGTGGACTGTGCTGCT
i cebCap1.NW_016107755v1   C 0 I 197
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     168935 1515 +    273075 M
e rheMac8.chr4             30514128 84371 + 172585720 I

a score=14326.000000
s hg38.chr6_GL000254v2_alt  1165121 20 +   4827813 ctgggcagagggagggctgg
s panTro5.chr6             30123303 20 + 175400573 CTGGGCAGAGGGAGGGCTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30353978 20 + 173848474 CTGGGCAGAGGGAGGGCTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1       9994 20 +   2037526 CTGGGCAGAGGGAGGGCTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74823352 13 + 122973662 CT-------GGAGGGGGTGG
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29890190 10 - 170955103 CT------GAAGGGGA----
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     170479 20 -    863181 ctgggctgggagagggctgg
i cerAty1.NW_012002535v1   C 0 C 0
e cebCap1.NW_016107755v1     450988 197 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     168935 1515 +    273075 M
e rheMac8.chr4             30514128 84371 + 172585720 I

a score=189400.000000
s hg38.chr6_GL000254v2_alt  1165141 104 +   4827813 agagagggagccctgagggctgggct-ggggtgggGGTGGAA--------GGAGCTGAGAGTTGGAAATAGGC-AAAAAGCTGCAGAGGTGAGGGTAATGCAGGGTGGGATTGA
s panTro5.chr6             30123323 104 + 175400573 AGAGAGGGAGCCCTGAGGGCTGGGCT-GGGGTGGGGATGGAA--------GGAGCTGAGAGTTGGAAATAGGC-AAAAAGCTGCAGAGGTGAGGGTAGTGCAGGGTGGGATTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30353998 104 + 173848474 AGAGAGGGAGCCCTGAGGGCTGGGCT-GGGGTGGGGATGGAA--------GGAGCTGAGAGTTGGAAATAGGC-AAAAAGCTGCAGACGTGAGGGTAGTGCAGGGTGGGATTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      10014 105 +   2037526 AGAGAGGGAGCCCTGAGGGCTGGGCT-GGGGTGGGGGTGGAA--------GGAGCTGAGAGTTGGAAATAGGCAAAAAAGCTGCAGAGGTGAGGGTAGTGCAGGGTGGGATTGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74823365 112 + 122973662 GAAGAGGGAGCCATGAGGTCTGGGCT-GGGATGTGCTTGGGAAGGAGCTGAGAGCTGAGAGCTGTAACTACGC-AAGGAGCTGCAGGGGTGAGGTTGGTGCAGCGCGGGATTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30598499 107 + 172585720 GGAGAGGGAGCCGTGAGGTCTGGGCT-GAGTGGGGGTGGGAG---AGCT-AGAGCTGAGAGCTGTAACTAGGC-AAGGAGCTGCAGGGGTGAGGTTGGTGCA-GGTGGGATTTA
i rheMac8.chr4             I 84371 I 71
s macFas5.chr4             29890200  91 - 170955103 -------------CGAggtctgggct-gggctagggtgggaa--------ggagctgagagctggAAATAGGC-AAAACGCTGCAGGGGTGAGGGTGGTGAAGGGTGGGATTGA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     170499 105 -    863181 ggagacggggccctgagggctgggctggggtcggggtgggaa--------ggagctgAGAATTGGAAATAGGC-AAAAAGCTGCAGGGGTGAGGGTGGTGAAGGGTGGGATTGA
i cerAty1.NW_012002535v1   C 0 C 0
e cebCap1.NW_016107755v1     450988 197 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     168935 1515 +    273075 M

a score=76215.000000
s hg38.chr6_GL000254v2_alt  1165245 66 +   4827813 GAGAATTTCCCCCG-ACTACTGTACTGAT-CCCTTCATCTCCTCCACCCGAGCACTTGGAGCC-----ACATA
s panTro5.chr6             30123427 65 + 175400573 GAGAATTTCCCCCG-ACTACTGTACTGAT-CCCTTCATCTCCTCCA-CCGAGCACTTGGAGCC-----ACATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30354102 65 + 173848474 GAGAATTTCCCCCG-ACTACTGTACTGAT-CCCTTCATCTCCTCCA-CCGAGCACTTGGAGCC-----ACATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      10119 64 +   2037526 GAGAATCTCCCCCG-ACTACTGTACTGAT--CCTTCATCTCCTCCA-CCCAGCACTTGGAGCC-----ACATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74823477 73 + 122973662 GAGGCTTTCCCCCACACTCCTGTGCTGATCCCCTTCATCTCCTCCACCCCCACCCTTGGTGTCCGTCAACATA
i nomLeu3.chr1a            C 0 I 1
s macFas5.chr4             29890291 65 - 170955103 -GAGGCTTCCCCC--ACTCCTGTGCTGACCCCCTTCACCTCCTCCACTCGCGCCCTTGCAGTG-----ACATG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     170604 66 -    863181 GAGGATTTGCCCC--ACTCCTGTACTGATCCCCTTTGTCTCCTGCACCCACACACTTGGAGTC-----ACATA
i cerAty1.NW_012002535v1   C 0 C 0
e cebCap1.NW_016107755v1     450988 197 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     168935 1515 +    273075 M
e rheMac8.chr4             30598606 71 + 172585720 I

a score=4025.000000
s hg38.chr6_GL000254v2_alt  1165311 2 +   4827813 GC
s panTro5.chr6             30123492 2 + 175400573 GG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30354167 2 + 173848474 GG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      10183 2 +   2037526 GG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74823551 2 + 122973662 GG
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30598677 2 + 172585720 GG
i rheMac8.chr4             I 71 C 0
s macFas5.chr4             29890356 2 - 170955103 GG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     170670 2 -    863181 GG
i cerAty1.NW_012002535v1   C 0 C 0
e cebCap1.NW_016107755v1     450988 197 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     168935 1515 +    273075 M

a score=321500.000000
s hg38.chr6_GL000254v2_alt  1165313 126 +   4827813 GGGTGGCCTCATCTTCCCACTGTCCCAGAAGCTGTTCTGC-CCTTCCATACTTGCCTTGGAGTTTTGGGAGCAGCATGTTTATGAGCCCTGGGGTGCCAGGGACCAGGAGGGCAGGAGGAGGTGAAG
s panTro5.chr6             30123494 126 + 175400573 GGGTGGCCTCATCTTCCCACTGTCCCAGAAGCTGTTCTGC-CCTTCCATACTTGCCTTGGAGTTTTGGGAGCAGCATGTTTATGAGCCCTGGGGTGCCAGGGACCAGGAGGGCAGGAGGAGGTGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30354169 126 + 173848474 GGGTGGCCTCATCTTCCCACTGTCCCAGAAGCTGTTCTGC-CCTTCCATACTCGCCTTGGAGTTTTGGGAGCAGCATGTTTATGAGCCCTGGGGTGCCAGGGACCAGGAGGGCAGGAGGAGGTGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      10185 126 +   2037526 GGGTGGCCTCATCTTCCCACTGTCCCAGAAGCTGTTCTGC-CCTTCCATACTTGCCTTGGAGTTTTGGGAGCAGCATGTTTATGAGCCCTGGGGTGCCAGGGACCAGGAGGGCAGGAGGAGGTGAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74823553 126 + 122973662 GGGTGCCCTCATCTTCCCACTGCCCCTGGAGCTGTTCTGC-TCTTCCATGCTTGCCTTGGGGTTTTCAGAGCAGCATCTTTGTGAGTCCTGGAGTGCTAGGGACCAGGAGGGCAGGAGGAGGTGAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30598679 125 + 172585720 GGGTGACCTCATCTTCCCACTGCCCTCGGAGC-GTTCTGCTTCTTCCATGCTTGCCTTGGGGTTTCCAGAGCAGCAACTTTGTGAGTCCTGGAGTGCTAGGGACCAGGAGG-CAGGTGGAGGTGAAG
i rheMac8.chr4             C 0 I 89
s macFas5.chr4             29890358 122 - 170955103 AGCTGGCCTTATCTTCCCACTGCCCCTGAAAC-TGTTTGC-TCTTCCATGCTTGCCTTTGGGCTCTGGGAGTAGCATGTTTAGGAGCCGTGGGGTCCCAGGGACCAGGAGG---GCAGGAGGGGAAA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     170672 126 -    863181 GGGTGGCATCATCTTCCCACTGCCCCAGAGGCTGGTCTGC-CCTTCCATGCTTGCCTTGGAGTTTTGGGAGCAGCATGTTTATAAGCCCTGGGGTGCTAGGGACCAGGAAGGCAGGAAGAGACGAAG
i cerAty1.NW_012002535v1   C 0 C 0
s cebCap1.NW_016107755v1     451185 126 -   1771730 GGGTGACCTCAGCTTCTCACTGTTCCTGGAGCTATTCTGC-TCTTCTATGCTTGCCTTGAGGTTTTTGGAGTAACATCATCAAGAGCCCTGGGGTGCCAGGGACCAGAAAGTCAGGAGGAGGCAAAG
i cebCap1.NW_016107755v1   I 197 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     168935 1515 +    273075 M

a score=27016.000000
s hg38.chr6_GL000254v2_alt  1165439 12 +   4827813 AAAACAGCACCG
s panTro5.chr6             30123620 12 + 175400573 AAAACAGCACCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30354295 12 + 173848474 AAAACAGCACCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      10311 12 +   2037526 AAAACAGCACCG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74823679 12 + 122973662 ACAACAGCACCG
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29890480 12 - 170955103 GAAACAGCACCG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     170798 12 -    863181 GAAATAGCACCG
i cerAty1.NW_012002535v1   C 0 C 0
s cebCap1.NW_016107755v1     451311 12 -   1771730 GAAACAGCACCA
i cebCap1.NW_016107755v1   C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     168935 1515 +    273075 M
e rheMac8.chr4             30598804 89 + 172585720 I

a score=163681.000000
s hg38.chr6_GL000254v2_alt  1165451 67 +   4827813 AGAGAGCCAGGGGAGTGGGAGGACTGTGGCAGGTGAGGCAAGGAGCTGTCTGAGCCGCTCAGCAGCC
s panTro5.chr6             30123632 67 + 175400573 AGAGAGCCAGGGGAGTGGGAGGACTGTGGCAGGTGAGGCAAGGAGCTGTCTGAGCCACTCAGCAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30354307 67 + 173848474 AGAGAGCCAGGGGAGTGGGAGGACTGTGGCAGGTGAGGCAAGGAGCTGTCTGAGCCACTCAGCAGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      10323 67 +   2037526 AGAGAGCCAGGGGAGTGGGAGGACTGTGGCAGGTGAGGCAAGCAGCTGTCTGAGCTGCTCAGCAGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74823691 66 + 122973662 AGAGATCC-TGGAAGAGAAAGGACCATGGTGGGTGAGGCAGGGAGCAGTCTGAGTTGCCCAGAAGAC
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29890492 66 - 170955103 CCAGAGCCAAGGGAGAAGGAGG-CAGTGGCAGGTGAGGCAAGGAGCTGTTTGAGCCACTGAGCAGCC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     170810 67 -    863181 AGAGAGACAGGTGAGTGGGAGGACTGTGGCAGGTGAGGCAAGGAGCTGTCTGAGCCGCTCAGCAACC
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     170450 67 +    273075 AGAGAGACAGGTGAGTGGGAGGACTGTGGCAGGTGAGGCAAGGAGCTGTCTGAGCCGCTCAGCAACC
i manLeu1.NW_012101121v1   M 1515 C 0
s cebCap1.NW_016107755v1     451323 67 -   1771730 AGAGAGCCAAGGCAGGGGCAGGACCATGGTGGGTGAGGCAGGGGGCTGTCTCAGCTGCCCATCAGCC
i cebCap1.NW_016107755v1   C 0 I 93
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e rheMac8.chr4             30598804 89 + 172585720 I

a score=12703.000000
s hg38.chr6_GL000254v2_alt  1165518 7 +   4827813 TTCAGGA
s panTro5.chr6             30123699 7 + 175400573 TTCAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30354374 7 + 173848474 TTCAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      10390 7 +   2037526 TCCAGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74823757 7 + 122973662 ACCAGGA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             29890558 7 - 170955103 ACCAGGA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     170877 7 -    863181 TCTAGGA
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     170517 7 +    273075 TCTAGGA
i manLeu1.NW_012101121v1   C 0 C 0
e cebCap1.NW_016107755v1     451390 93 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e rheMac8.chr4             30598804 89 + 172585720 I

a score=3600.000000
s hg38.chr6_GL000254v2_alt  1165525 1 +   4827813 G
s panTro5.chr6             30123706 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30354381 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      10397 1 +   2037526 G
i gorGor5.CYUI01015528v1   C 0 I 3
s nomLeu3.chr1a            74823764 1 + 122973662 G
i nomLeu3.chr1a            C 0 I 3
s macFas5.chr4             29890565 1 - 170955103 G
i macFas5.chr4             C 0 I 3
s cerAty1.NW_012002535v1     170884 1 -    863181 G
i cerAty1.NW_012002535v1   C 0 I 3
s manLeu1.NW_012101121v1     170524 1 +    273075 G
i manLeu1.NW_012101121v1   C 0 I 3
s otoGar3.GL873550         17115321 1 -  18854210 G
i otoGar3.GL873550         N 0 C 0
e cebCap1.NW_016107755v1     451390 93 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e rheMac8.chr4             30598804 89 + 172585720 I

a score=186341.000000
s hg38.chr6_GL000254v2_alt  1165526 71 +   4827813 GCTCTCTCCAGGCC-TGTCTTCACTCCAGTGCCTGGCCCTACCCAGGCCCCCAC-----TCCCGCTCTG-------------------CTCTCAAG
s panTro5.chr6             30123707 71 + 175400573 GCTCTCTCCAGGCC-TGTCTTCACTCCAGTGCCTGGCCCTACACAGGCCCCCAC-----TCCCACTCTG-------------------CTCTCAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30354382 71 + 173848474 GCTCTCTCCAGGCC-TGTCTTCACTCCAGTGCCTGGCCCTACACAGGCCCCCAC-----TCCCACTCTG-------------------CTCTCAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      10401 71 +   2037526 GCTCTCTCCAGGCC-TGTCTTCACTCCAGTGCCTGGTCCTGCCTAGGCCCCCAC-----TCCCGCTCTG-------------------CTCTCAAG
i gorGor5.CYUI01015528v1   I 3 C 0
s nomLeu3.chr1a            74823768 91 + 122973662 GCTCTCTGCAGGCCTTGGCTTTGCTTCAGTGCCTGGCCCTGCATAGGCCCCCGCCCCTGTCCCGCTCTG-----CTGCCCCCATCTCCCTCTCAGA
i nomLeu3.chr1a            I 3 C 0
s rheMac8.chr4             30598893 90 + 172585720 GCTCTCTCCAGGCCTTGGCTTTACTTCAGTGCCTGGCCCTGCATCGGTCCC-AC-----GCCTGCCCTGCTCTGCTGCCTCCACCTCCCTCTCAGC
i rheMac8.chr4             I 89 C 0
s macFas5.chr4             29890569 71 - 170955103 GCTCTCTCCAGGCC-TGTCTTCACTTCAGTGCCTGGCCCTGCCCAGGCCCCGAC-----TCCTGCTCTG-------------------CTCTCAAC
i macFas5.chr4             I 3 C 0
s cerAty1.NW_012002535v1     170888 71 -    863181 GCTCTCTCCAGGCC-TGTCTTCACTCCAGTGCCTGGCCCGACCTAGGCCCCCAC-----TCCCACTCTA-------------------CTCTCAAC
i cerAty1.NW_012002535v1   I 3 C 0
s manLeu1.NW_012101121v1     170528 71 +    273075 GCTCTCTCCAGGCC-TGTCTTCACTCCAGTGCCTGGCCCGACCTAGGCCCCCAC-----TCCCACTCTA-------------------CTCTCAAC
i manLeu1.NW_012101121v1   I 3 C 0
s otoGar3.GL873550         17115322 65 -  18854210 GCTCCCTCCTGGCG-TGGC------CCAGGCCTCTTCTCTGCCCGCTCTGCTGC-----CCCCACTTTC-------------------CTCCCAGC
i otoGar3.GL873550         C 0 C 0
e cebCap1.NW_016107755v1     451390 93 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T

a score=677267.000000
s hg38.chr6_GL000254v2_alt  1165597 178 +   4827813 CTGGCCCCAGACAGGATCCCAAACAACTCCTGTTCCTAATGTGAAAAATGTTTCTGCCGCTTTAGGCAGAACTTGCTTTAGAGCACTGGCA--CAGCCTTCCGCAGGTCTTGTGTCTGATTCTCTTGGCACTGtgccttttttcacttattc-------ttct-------gcaaggaaggaattatatcactgg
s panTro5.chr6             30123778 178 + 175400573 CTGGCCCCAGACAGGATCCCAAACAACTCCTGTTCCTAATGTGAAAAATGTTTCTGCCGCTTTAGGCAGAACTTGCTTTAGAGCACTGGCG--CAGCCTTCCGCAGGTCTTGTGTCTGATTCTCTTGGCACTGTGCCTTTTTTCGCTTATTC-------TTct-------gcaaggaaggaattatatcactgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30354453 178 + 173848474 CTGGCCCCAGACAGGATCCCAAACAACTCCTGTTCCTAATGTGAAAAATGTTTCTGCCGCTTTAGGCAGAACTTGCTTTAGAGCACTGGTG--CAGCCTTCCGCAGGTCTTGTGTCTGATTCTCTTGGCACTGTGCCTTTTTTCGCTTATTC-------TTct-------gcaaggaaggaattatatcactgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      10472 177 +   2037526 CTGG-CCCAGACAGGATCCCAAACAACTCCTGTTCCTAATGTGAAAAATGTTTCTGCCGCTTTAGGCGGACAGTGCTTTAGAGCACTGGTG--CAGCCTTCCACAGGTCTTGTGTCTGATTCTCTTGGCACTGtgccttttttcacttattc-------ttct-------gcaaggaaggaattatatcactgg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74823859 186 + 122973662 CTGGCCTCAGACAGAATCCAAACCAACTCCTGTTTCTGATGTGAAAAATGTTCCTGCCAGTTTAGGCAGAGCTTGCTTTAGAGCACTGGTGCCCAGCCTTCCACAGGTCTTGTGTCTGTTTTTCTTGGCACTGTGTTTCTtctcacttattt-------ttctgaat-tggcaaggcaggaattacatcactgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30598983 186 + 172585720 CTGGTCTCAGACACAATCCAGACCAACTCCTGTTTCTGATGTGAAAAATGTTCCTGTCAGTTTAGGCAGAACTTGCTTCAGAGCACTGGTGCCCAGCCTTCCACAGGTCTTGTGTCTGTTCTTCTCGGCACTGTGTTTCTtctcatgtattc-------ttctgaat-tggcaaggcaggaattacatcactgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29890640 178 - 170955103 CTGGCCTCAGACAGGATCTTGAAAAACTCCTATTCCTAATGTGAAAAATGTTTCTGCCAGTTTAGGCAGAACTTGCTTTAGAGCACTGGTGCCCAGCCTTCCACAGGTC--GTGTCTGCTTTTCTTGACACTGTGTCTTTTTTCATTTATTC-------TTCT-------GCGAGGAAGGAATTATATCACTGG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     170959 178 -    863181 CTGGCCCCAGACAGGATCCCAAACAACTCCTGTTCCTAATGTGAAAAATGTTCCTGCCAGTTGAGGCAGAACTTGCTTTAGAGCACTGGTA--CAGCCTTCCACAGGTCGTGTGTCTGATTTTCTTGGCACTGTGTCTTTTTTTACTTGTTC-------TTct-------gcaaggaaggaattatatcactgg
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     170599 178 +    273075 CTGGCCCCAGACAGGATCCCAAACAACTCCTGTTCCTAATGTGAAAAATGTTCCTGCCAGTTGAGGCAGAACTTGCTTTAGAGCACTGGCA--CAGCCTTCCACAGGTCGTGTGTCTGATTTTCTTGGCACTGTGTCTTTTTTTACTTGTCC-------TTct-------gcaaggaaggaattatatcactgg
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     451483 186 -   1771730 CTGGACCCAGACAGAATCCAGAACAACTCCTGTTCCTTATCTGAAAAACGTTCCTGCCAGTTTAGGTACAGCTTGCTTTGGAGCACTGG-GCCTGGCCTTCCGCAGGTCTTCTGTCTGCTTCTCTTGGCATTGTGTCTCTtctcacttattc-------tcctgaatgctgcaaggaaggaattacatcactgg
i cebCap1.NW_016107755v1   I 93 I 1038
s otoGar3.GL873550         17115387 181 -  18854210 CTGGCCCCAGACAGAGTCCAG---AGCTCCTGCTCCTGATCTGGAAAATGTTCCTGCCAGTTCAGGCAGAACTTGCTGGAGAACAC-GGTG-CCAGCCGGCTGTAGGT-GTATGTTTGGTTCTCTCTGCACCGCGTCTTTTCTCACTTACTCCTGTCCTCTCT-------GCAAGGCAGGAATTACACCACTGA
i otoGar3.GL873550         C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T

a score=554488.000000
s hg38.chr6_GL000254v2_alt  1165775 193 +   4827813 ----tt---gggtgaggcaactggctcagaggggttcactgagcactcacccaCTGGGCAAGTGTCTGTCAGGGCCAGCTATGGCCAAgatgtgtccaaggctctatagctagctggtggaaaggcctggagggttcatattcaggtccacctaacttgaaaacttatattGA---CCTTACTTAAGTACTGATTCCCCCTTT
s panTro5.chr6             30123956 193 + 175400573 ----tt---gggtgaggcaactggctcagaggggttcattgagcactcacccaCTGGGCAAGTGTCTGTTGGGGCCAGCTATGGCCCAGAAGtgcccaaggctctatagctagctggtggaaaggcctggagggttcatattcaagtccacctgacttgaaaactcatattga---ctttACTTAAGTACTGATTCCACCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30354631 193 + 173848474 ----tt---gggtgaggcaactagctcagaggggttcattgagcactcacccaCTGGGCAAGTGTCTGTTGGGGCCAGCTATGGCCCAGAAGtgcccaaggctctatagctagctggtggaaaggcctggagggttcatattcaagtccacctgacttgaaaactcatattga---ctttACTTAAGTACTGATTCCACCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      10649 186 +   2037526 ----tt---gggtgaggcaactga-tcagagggg-tcaTTGAGCA-TCA-CCACTGGGCAAGTGTCTGTTGGGGCCAACTTGGGCCAAgatgtgccc-aggctctatagctagctggtggaaaggcctggagggttcatattcaggtccacct-acttgaaaactcatattGA---CCTTACTTAAGTACTGATTCC-CCTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74824045 196 + 122973662 ----tttgcagaggaggaaactgactcatatgggttCATTCAGCACTCACTCACTGTAAAAGTGTCTGTCAGGGACAACTGTGGGCCAgatgtgcccagggctctacagctagctggtagaagggcctggagggttcatattcaggtccatctgacttgaaaacTGATATTGA---CCTTACTTAAGTACTGATTCCCGCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30599169 194 + 172585720 ----tttgcagatgaggaaacggactcatataggttCATTCAGCACTCACTTACTGGGCAAGTGTCTGTCAGGGCCAACTGTGGGCCAGATGTGCCCAGGGCTCTATAGCTAGCTGGTGGAAGGGCCTGGAGGGTTCATATTCAGGTTCAC--AGATTGAAAACTCATATTGA---CCTTACTTAAGCACTGATTCCCGCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29890818 182 - 170955103 ----TTTGCGGATGAGGAAA--------------TTCATTCAGCACTCACCCACTGGCCAAGTGTCTGCTTGCGCCAGCTGTGGCTCAGATGTACTCAAGGCTCTATAGCTAACTGGTGGAAAGGCCTGGAGGGCTCATATTCAGGTTCACTTAACTCGAAAACTCATATTGA---CCTTACTTAAGTACTGATTCCCGCTTT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     171137 193 -    863181 ----tt---ggatgaggcaactggctcagatgggttCATTCAGCACTCACCCACTGGGCAAGCGTCTGTTTGGGCCAGCTTTGGCCCAgatgtgcccaaggctgtacagctagctggtggaaagacctggagggttcatattcagatccgcctgacttgaaaactcatattGA---CCTTACTTAAGTACTGATTCCCCCTTT
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     170777 193 +    273075 ----tt---ggatgaggcaactggctcagatgggttCATTCAGCACTCACCCACTGGGCAAGCGTCTGTTTGGGCCAGCTTTGGCCCAgatgtgcccaaggctgtacagctagctggtggaaagacctggagggttcatattcagatccgcctgacttgaaaactcatattGA---CCTTACTTAAGTACTGATTCCCCCTTT
i manLeu1.NW_012101121v1   C 0 C 0
s otoGar3.GL873550         17115568 202 -  18854210 CTGGTTAGCAGTTGAGAAACCTGCCTCAGATAGTTGCATTCAGGGCTCACTCATGGGGCAGGTGTCTGTC-GGGCCAGATCTGGGCCCGATGTGCTGAAAGTTCCTCAGCTGGTTGATAGAAGAGGTTGGAAGGATCATGCCCAGGTGCACCTGACTTAAAACCTCGTACTCACCGCCCTGGTCAGGTACTGATTTCCTCTCT
i otoGar3.GL873550         C 0 C 0
e cebCap1.NW_016107755v1     451669 1038 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T

a score=146753.000000
s hg38.chr6_GL000254v2_alt  1165968 57 +   4827813 ATaatccatgccgcaaacttcattgtcttattttaagaagttgccataagagccttt
s panTro5.chr6             30124149 57 + 175400573 ATaatccatgccttaaacttcattgtcttattttaagaagttgccataagagccttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30354824 57 + 173848474 ATaatccatgccttaaacttcattgtcttattttaagaagttgccataagagccttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      10835 57 +   2037526 ATaatccatgccgcaaacttcattgtcgtatgttaagaagttgccataagagccttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74824241 57 + 122973662 Acaatccatgccacgaactttattgtcatatctaaagaagttaccacagcagccttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30599363 50 + 172585720 Acaatccatgccacaaactttattgtc-----ttaagaagttgccacagcagccc--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29891000 57 - 170955103 GTaatccatgccacaaacttcattgtcttattttaagaaattgtcacagaagcctct
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     171330 57 -    863181 ATaatccatgccacaaacttcattgtcttattttaagaaattgccacaggagccttt
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     170970 57 +    273075 ATaatccatgccacaaacttcattgtcttattttaagaaattgccacaggagccttt
i manLeu1.NW_012101121v1   C 0 C 0
e otoGar3.GL873550         17115770  0 -  18854210 C
e cebCap1.NW_016107755v1     451669 1038 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T

a score=229846.000000
s hg38.chr6_GL000254v2_alt  1166025 68 +   4827813 agcaaccaccctcctgatcagccagcagtcatcaacattgaggcaagaccctgccccagcaaaaagat
s panTro5.chr6             30124206 68 + 175400573 agcaaccatcctcctgatcagccagcagtcatcaacattgaggcaagaccctgccccagcaaaaagat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30354881 68 + 173848474 agcaaccaccctcctgatcagccagcagtcatcaacattgaggcaagaccctgccccagcaaaaagat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      10892 67 +   2037526 agcaaccaccctcctgatcagccagcagtcatcaacattgaggcaagaccctg-cccagcaaaaagat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74824298 65 + 122973662 agcaaccaccctcctgatcagccaatag---tcaacactgaggcaagaccctcccccagcaaaaagat
i nomLeu3.chr1a            C 0 N 0
s rheMac8.chr4             30599413 60 + 172585720 --------ccgttgtggtcagtcagcagtcatcaacattgaggcaagaccctcctccagcaaaaatat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29891057 68 - 170955103 aggaaccaccctcctgatcagccagcggtcatcaacaatgaggcaagaccctcccccagcaaaaagat
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     171387 68 -    863181 agcaaccaccctcctgatcagccagcagtcatcaacattgaggcaagaccttgccccaggaaaaagat
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     171027 68 +    273075 agcaaccaccctcctgatcagccagcagtcatcaacattgaggcaagaccctgccccagcaaaaagat
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     452707 68 -   1771730 agcaaccaccctcttgaccagtcagcagtcatcagcactgaggcaagagcctgtacctacaaaaacat
i cebCap1.NW_016107755v1   I 1038 C 0
e otoGar3.GL873550         17115770  0 -  18854210 C
e colAng1.NW_012115577v1      53175 22804 -   1829203 T

a score=199291.000000
s hg38.chr6_GL000254v2_alt  1166093 63 +   4827813 taagattagctgaagcctcagatgatccttagcatttttgagcaatagagtaattttaaatta
s panTro5.chr6             30124274 63 + 175400573 taagattagctgaagcctcagatgatccttagcagttttgagcaatagagtaattttaaatta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30354949 63 + 173848474 taagattagctgaagcctcagatgatccttagcagttttgagcaatagagtaattttaaatta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      10959 62 +   2037526 taagattagctgaagcctcagatgatccttagcattttt-agcaatagagtaattttaaatta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74706975 62 + 122973662 tagtattagctgaagcctcagatgactgttagcattttt-agcagtagcataattataaatta
i nomLeu3.chr1a            N 0 I 1027
s rheMac8.chr4             30599473 63 + 172585720 tagtattagctgaaggctctgatgactgtttgcattttttagcagtagtataattataaatta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29891125 63 - 170955103 taagatgagctgaagcctcagacgatcgttagcatttttcagcaatagagtaattttaaatta
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     171455 63 -    863181 tgagattacctgaagcctcagatgatccttagcattttttagcaatagagtaattttaactta
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     171095 63 +    273075 tgagattacctgaagcctcagatgatccttagcattttttagcaatagagtaattttaactta
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     452775 63 -   1771730 taggattagctgaagcctcagatgattgttagcattttttagaaataaagtgattttacatta
i cebCap1.NW_016107755v1   C 0 C 0
e otoGar3.GL873550         17115770  0 -  18854210 C
e colAng1.NW_012115577v1      53175 22804 -   1829203 T

a score=420954.000000
s hg38.chr6_GL000254v2_alt  1166156 165 +   4827813 aggtatatacata-gttc-ttttatacataatgctatcatacacttaataggctacagtagagtgtgaatataacttttctatgcactggaaaaac-aaaaatttgtgtgacttgttt-gttgcc-------atGGTCTGAAACCAAATCTGCAGTGTCTCTGAGGTACGTCTGTA
s panTro5.chr6             30124337 165 + 175400573 aggtatgtacata-gttc-ttttatacataatgctatcatacacttaataggctacagtagagtgtgaatataacttttctatgcactggaaaaac-aaaaatttgtgtgacttgttt-gttgcc-------atggtctgaaaccaaatctgcagtgtctctgaggtatgtctgTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30355012 165 + 173848474 aggtatgtacata-gttc-ttttatacataatgctatcatacacttaataggctacagtagagtgtgaatataacttttctatgcactggaaaaac-aaaaatttgtgtgacttgttt-gttgcc-------atGGTCTGAAACCAAATCTGCAGTGTCTCTGAGGTATGTCTGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      11021 165 +   2037526 aggtatatacata-gttc-tttcatacataatgctatcatacacttaataggctacagtatagtgtgaatataacttttctatgcactggaaaaac-aaaaatttgtgtgacttgttt-gttgcc-------atggtctgaaaccaaatctgcagtgtctctgaggtatgtctgTA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30599536 165 + 172585720 aggtatgtacata-tcta-ttttatacataatgttattgtacacttaatagtctataatagagtataaatataatttttatatgcactgcaaaacc-aaaacaat-tgtgacttgttttgttggc-------atggtctgaaaccaaatctgcaataactctgaggtgtgtctgTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29891188 174 - 170955103 atgtatctgcatagtttt-ttttacacataatgttattatacatttagtaggctacagtagagtataaatataatttttatattcactggaaaaac-aaaagtttgtgtggcttgctttgttgccatagtctatggtctgaaaccaaatctgcagtgtctcagatgtatgtcCATA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     171518 166 -    863181 aggtatatacata-gttc-ttttatacttaatgctatggtacacttaataggctacagtagagtgtaactataacttttataggcactggaaaaac-aaaaatttgtgtgacttgtttgttctcc-------atggtctgaaaacaaatctgcagtgtctctgaggtacgtctgTA
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     171158 166 +    273075 aggtatatacata-gttc-tgttatacataatgctatggtacacttaataggctacagtagagtgtaactataacttttataggcactggaaaaac-aaaaatttgtgtgacttgtttgttctcc-------atggtctgaaaccaaatctgcagtgtctctgaggtacgtctgTA
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     452838 168 -   1771730 aggtatatacata-gctcatttaatacataatggtattgtacacttaatagactacagtagagtgtaaatatgacttttgtacgcactagataaacaaaaaacttgtgtgacttgctttgttgtc-------ctggtctggaaccaaatctgcaaaatctccaaggtatgtctgTC
i cebCap1.NW_016107755v1   C 0 C 0
e otoGar3.GL873550         17115770   0 -  18854210 C
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e nomLeu3.chr1a            74707037 1027 + 122973662 I

a score=710076.000000
s hg38.chr6_GL000254v2_alt  1166321 220 +   4827813 GTTTCCCTTTCC-CTCTTCCTGCTGGCCCGGAATGACCTTGTTTCTTGCCCCTGTCTAGCCCTGCATGCTGCAGGGGTTTGCCTTCTCTGGTAGGTCTGGGAACTTTGCAT-CCTTGTAACCTTGGCTCCTGGCATATGACACTGGTAC------CAAGCTCTGTTGGACTAGTGAGCCTCCTCCCCACACACCTCCTGAACTAGAACCAAAGCTCTGTGCATGCACC
s panTro5.chr6             30124502 220 + 175400573 GTTTCCCTTTCC-CTCTTCCTGCTGGCCCAGAATGACCTTGTTTCTTGCCCCTGTCTAGCCCTGCATGCTGCAGGGGTTTGCCTTCTCTGGTAGGTCTGGGAACTTTGCAT-CCTTGTAACCTTGGCTCCTGGCATATGACACTGGTAC------CAAGCTCTGTTGGACTAGTGAGCCTCCTCCCCACACACCTCCTGAACTAGAACCAAAGCTCTGTGCACGCACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30355177 220 + 173848474 GTTTCCCTTTCC-CTCTTCCTGCTGGCCCAGAATGACCTTGTTTCTTGCCCCTGTCTAGCCCTGCATGCTGCAGGGGTTTGCCTTCTCTGGTAGGTCTGGGAACTTTGCAT-CCTTGTAACCTTGGCTCCTGGCATATGACACTGGTAC------CAAGCTCTGTTGGACTAGTGAGCCTCCTCCCCACACACCTCCTGAACTAGAACCAAAGCTCTGTGCACGCACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      11186 220 +   2037526 GTTTCCCTTTCC-CTCTTCCTGCTGGCCCAGAATGACCTTGTTTCTTGCCCCTGTCTAGCCCTGCATGCTGCAGGGGTTTGCCTTCTCTGGTAGGTCTGGGAACTTTGCAT-CCTTGTAACCTTGGCTCCTGGCATATGACACTGGTAC------CAAGCTCTGTTGGACTAGTGAGACTCCTCCCCACACACCTCCTGAACTAGAACCAAAGCTCTGTGCACGCACC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30599701 224 + 172585720 ATTTCCCTTTCC-CTCTTCTTGCTGGCCCAGAATGACCTTGTTTCTTGTCCCTGTCTAGCCCTGCATGCTGTAGGGGTTTGCTTTCTCTGGTAGGTCTGGACACTTTTTATCCCTTGCAATCTAGGCTCTTGGCTTATGACACTGGAGCTAGCCTCAACCTCTGTTGGACTAGTGAG---CCTCCCTCCACACCTCCTGAACTAGAACCGAAGCTCTGTGCACACACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29891362 217 - 170955103 ATTTCCCTTTCC-CTCTTCTTGC-GGCCTAGAATGAACTTGTTTCTGGTCCCTGTCTAGCCCTGCATGCTGTAGGGGTTTGCCTTCTCTGGTAGGTCTGGGAACATTGTATCCCTTGTAACCCTGGCTCCTGGCATATGACACTGGTAC------CAAGCTCTGTTGGACTAGTGAG---CCTCCCCACACACCTCCTGAACGAGAGCAAAAGCTCTGTGCACACACC
i macFas5.chr4             C 0 N 0
s cerAty1.NW_012002535v1     171684 217 -    863181 ATTTCCCTTTCC-CTCTTCCTGCTGGCCCAGAATGACCTTGTTTCTTGTCCCTGTTTAGCCCTGCATGCTGCAGGGGTTTGCCTTCTCTGGTAGGTCTGGGAACTTTGCAT-TCTTGTAACCTTGGCTCCTGGCATATGACACTGGTAC------CAAGCTCTGTTGGACTAGTGAG---CCTCCCCACACACCTCCTGAACTAGAACCAAAGCTCTGAGCACGCACC
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     171324 217 +    273075 ATTTCCCTTTCC-CTCTTCCTGCTGGCCCAGAATGACCTTGTTTCTTGTCCCTGTTTAGCCCTGCATGCTGCAGGGGTTTGCCTTCTCTGGTAGGTCTGGGAACTTTGCAT-TCTTGTAACCTTGGCTCCTGGCATATGACACTGGTAC------CAAGCTCTGTTGGACCAGTGAG---CCTCCCCACACACCTCCTGAACTAGAACCAAAGCTCTGAGCACGCACC
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     453006 216 -   1771730 ATTTCCCTTTCC-CTCTTCTTGTTGGCTAAGAATGACCTTGTTTCTTG-CCCTGTCTAGCCCTTCGTGCTGTAGGAGTTTGTCTTCTCTGGTAGGTTTGGGCACTTTGTATCCCTTGTGACCTTGGCTCCTGGCATATGATACTGGTAC------CAAGCTCTATTGGACTACTGAA---CCTCCCCGCACACCTCCTGAACTAGAACTGACGCTC-ATGCACACATG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         17115770 221 -  18854210 GTTCCCTTTTCCTCTCTTCTTTCTTAGATAGGATGACCTTATTTCTTGTCCCTGATTTGCACAGAATGTTG-GCAGGTTTTCCTTCTCTGCTAGGTCTGGCACCTTTGTGT-CACTGTAACCTGGGTTCCTGACACATAACACTGGTAT-AGGCGTCAACTTTGCTGTACTGCTGAG---CCTCCCCCCCCTCCTCCTGTA-GAGAAGCAAAGCCCCATGTGTGTACC
i otoGar3.GL873550         C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e nomLeu3.chr1a            74707037 1027 + 122973662 I

a score=6590.000000
s hg38.chr6_GL000254v2_alt  1166541 5 +   4827813 GTGCA
s panTro5.chr6             30124722 5 + 175400573 ATGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30355397 5 + 173848474 ATGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      11406 5 +   2037526 ATGCA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30599925 5 + 172585720 ATTCA
i rheMac8.chr4             C 0 I 33
s cerAty1.NW_012002535v1     171901 5 -    863181 AAGCA
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     171541 5 +    273075 AAGCA
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     453222 5 -   1771730 GAGCA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         17115991 5 -  18854210 TGGCG
i otoGar3.GL873550         C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e nomLeu3.chr1a            74707037 1027 + 122973662 I

a score=66262.000000
s hg38.chr6_GL000254v2_alt  1166546 34 +   4827813 ----TGTGTGAGCCAATGACAAGATGTTGTCTTCCTGC
s panTro5.chr6             30124727 34 + 175400573 ----TGTGTGAGCCAATGACAAGATGTTGTCTTCCTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30355402 34 + 173848474 ----TGTGTGAGCCAATGACAAGATGTTGTCTTCCTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      11411 34 +   2037526 ----TGTGTGAGCCAATGACAAGATGTTGTCTTCCTGC
i gorGor5.CYUI01015528v1   C 0 C 0
s cerAty1.NW_012002535v1     171906 34 -    863181 ----TGTGTGAGCCAGTGACGAGATGTTGCCTTCCTGC
i cerAty1.NW_012002535v1   C 0 I 1
s manLeu1.NW_012101121v1     171546 34 +    273075 ----TGTGTGAGCCAGTGACGAGATGTTGCCTTCCTGC
i manLeu1.NW_012101121v1   C 0 I 1
s cebCap1.NW_016107755v1     453227 34 -   1771730 ----TGTGTGAGCCTGTGTGGAAATATTGGCTTCCTGC
i cebCap1.NW_016107755v1   C 0 I 1
s otoGar3.GL873550         17115996 38 -  18854210 TGTGTGAGTGAACCTGTGTACAGATTTCAGCTTCCTGC
i otoGar3.GL873550         C 0 I 1
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e rheMac8.chr4             30599930 33 + 172585720 I
e nomLeu3.chr1a            74707037 1027 + 122973662 I

a score=564336.000000
s hg38.chr6_GL000254v2_alt  1166580 246 +   4827813 GAGTGTTCTGAAGGAGTGTTCTGTTGTGACTGGAGGACACAGCCACAGGCCCCCCAGGCAGAGGTGGCTCAGAAGGGAGTGGATGGCCCCGGTTTTGATCATCTGGGGACAAGAAGGTCCTGAGAT-AAAAACCCATGTTTTGGAAAACAAAACTGCCCGAGACTGAAAAGTGGCTAACCAATTCGCTATCTGGGACATCACT-GCACACTGGGAGGGAAGATGGCTTCTGCCATGGTGTA-GGGTCCC
s panTro5.chr6             30124761 246 + 175400573 GGGTGTTCTGAAGGAGTGTTCTGTTGTGACTGGAGGACACAGCCACGGGCCCCCCAGGCAGAGGTGGCTCAGAAGGGAGTGGATGGCCCTGGTTTTGATCATCTGGGGACAAGAAGGTCCTGAGAT-AAAAACCCATGTTTTGGAAAACAAAACTGCCCAAGACTGAAAAGTGGCTAACCAATTCGCTATCTGGGACATCACT-GCACACTGGGAGGGAAGATGGCTTCTGCCATGGTGTA-CGGTCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30355436 246 + 173848474 GGGTGTTCTGAAGGAGTGTTCTGTTGTGACTGGAGGACACAGCCACGGGCCCCCCAGGCAGAGGTGGCTCAGAAGGGAGTGGATGGCCCTGGTTTTGATCATCTGGGGACAAGAAGGTCCTGAGAT-AAAAACCCATGTTTTGGAAAACAAAACTGCCCGAGACTGAAAAGTGGCTAACCAATTCGCTATCTGGGACATCACT-GCACACTGGGAGGGAAGATGGCTTCTGCCATGGTGTA-GGGTCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      11445 245 +   2037526 GGGTGTTCTGAAGGAGTGTTCTGTTGTGACTGGAGGACACAGCCACGGGCCCCCCAGGCAGAGGTGGCTCAGAAGGGAGTGGATGGCCCTGGTTTTGATCATCTGGGGACAAG-AGGTCCTGAGAT-AAAAACCCATGTTTTGGAAAACAAAACTGCCCGAGACTGAAAAGTGGctaaccaattcgctctctgggacatcact-gcacactgggagggaagatggcttctgccatggtgta-gggtccc
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30599963 245 + 172585720 GGGTGTTCTGAAAGGGTGTTCTGTTGTGACTGGAGGGCATAGCCACAGG-TCTCTGGGCAGAGGTGGCTCAGAAAAGAGTAGATGACCACAGTTTTGGTCGTCTGAGAACAGGAAGATCCTGAGAC--AAAACGCATGCCTTAGAAAACAACACTGCTCCAAAGCTGACAGCGGCTAGCCAGCTTGCTATCTGGGACATCACT-CTGCACTGGGGGGCAAGATGGCCGCTGCCATGGTGTAGGGGTCCA
i rheMac8.chr4             I 33 C 0
s cerAty1.NW_012002535v1     171941 248 -    863181 GGGTGTCCTGAAGGAGTGTTCTGTTGTGACTGGAGGACACAGCCATGGGCCCCCCGGGCAGAGGTGGCTCAGAAGGGAGTAGATGGCCCCAGTTTTTATCATCTGGGGACAAGAAGGTCCTGAGATAAAAAACCCATGTTTTAGAAGACAA-ACTGCCCAAGACTGAAAAGTGGCTAACCAGTTCACTATCTGGGACATCACTGGTGCACTGGGAGGGAAGACGGCCTCTGCCATGGGGTAGGGGTCCC
i cerAty1.NW_012002535v1   I 1 C 0
s manLeu1.NW_012101121v1     171581 248 +    273075 GGGTGTCCTGAAGGAGTGTTCTGTTGTGACTGGAGGACACAGCCATGGGCCCCCCGGGCAGAGGTGGCTCAGAAGGGAGTGGATGGCCCCAGTTTTTATCATCTGGGGACAAGAAGGTCCTGAGATAAAAAACCCATGTTTTAGAAGACAA-ACTGCCCAAGACTGAAAAGTGGCTAACCAGTTCACTATCTGGGACATCACTGGTGCACCGGGAGGGAAGACGGCCTCTGCCATGGGGTAGGGGTCCC
i manLeu1.NW_012101121v1   I 1 C 0
s cebCap1.NW_016107755v1     453262 234 -   1771730 GCATATTCTGAAGGGATGTCCTGTTGTGAGTGGAGGGCACAGCCACAGG-CCCCTGGGCAG---------AGAAGGGAGTAGATGACATCAG--TTGATCATCAGGACACAGGAAGGTCCTCAAAC-AAAAATCCATGCCTTAGAAGGCAAAACTGCCTGAGAGTGGACAGCTGCTAGCCAGCTTGCTATCTGGGACGTCACT-GTGCACTGGGAGGGAAGATGGCCTCTGCCATCGTGTAGGGGGCC-
i cebCap1.NW_016107755v1   I 1 I 53
s otoGar3.GL873550         17116035 243 -  18854210 GGGTGCTTTACAGG-GTGTCCTATTGTGAGTAGAGGGCACAGCTACGGG-CCCATGGGCAGAGGGACTTGAGAAAACAGTGGATGGTCCCAGTTTAGATGATCTAGGAGAAAGGATGTGCTCAGAC-AGGAGCACATGCCTGAGAAGGCAGGATTGCTAGAGAGCGGACAGCTGCTCACCAGATTGCCATC-GGGATGTCACT-CGAGAGTGGGAGAGAATGTGGCCTCTGTCATGGAAGA-GGGTCCA
i otoGar3.GL873550         I 1 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e nomLeu3.chr1a            74707037 1027 + 122973662 I

a score=66736.000000
s hg38.chr6_GL000254v2_alt  1166826 38 +   4827813 GGACCTAGACAAAGAGGCCTTCCTATGGCTCAGTGCTT
s panTro5.chr6             30125007 38 + 175400573 GGACCTAGACAAAGAGGCCTTCCTATGGCTCAGTGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30355682 38 + 173848474 GGACCTAGACAAAGAGGCCTTCCTATGGCTCAGTGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      11690 38 +   2037526 ggacctagacaaagaggccttcctatggctcaatgctt
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30600208 38 + 172585720 GGAACCAGGCGGGGAGGTCTTCCTGTGGGTCAGCGCTT
i rheMac8.chr4             C 0 I 14
s cerAty1.NW_012002535v1     172189 38 -    863181 AGACCCAGACAAGTGGACCTTCCTATGGATCAGTGCTT
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     171829 38 +    273075 AGACCCAGACAAGTGGACCTTCCTATGGATCAGTGCTT
i manLeu1.NW_012101121v1   C 0 C 0
s otoGar3.GL873550         17116278 37 -  18854210 -GGAAAAGGCAGAGAGAACTTCCTAGTGGTCAGTGGTT
i otoGar3.GL873550         C 0 C 0
e cebCap1.NW_016107755v1     453496 53 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e nomLeu3.chr1a            74707037 1027 + 122973662 I

a score=717301.000000
s hg38.chr6_GL000254v2_alt  1166864 299 +   4827813 --------------CTGAAGCACCTttaaatgaggccaaagacctcatgttcatgattagctgactagttcccactcagtggaaaaaaaaacc-cagaacttttgcaaaat-tttaggagagagggattt-ccctc------ttgtctcttagtgctacggttatgcatgactcatacttgaattgcagtgtgtacacagcttaaggacttaactattagaatacaagaggc--ccaaactactgttgttatagatatgtaaaactatatggtataaggttaaacaacccacaactaattaacagtgaagataaattaactaca
s panTro5.chr6             30125045 299 + 175400573 --------------CTGAAGCACCTTTAAATGAGGCCAAAGACCTCATGTTCATGATTAGCTGACTTGTTCCCACTCAGTGGGAAAAAAAACC-CAGAACTTTTGCAAAAT-TTTAGGAGAGAGGGATTT-CCCTC------TTGTCTCttagtgctacggttatgcacgactcatacttgaattgcaatgtggacacagcttaaggacttatctattagaatacaagaggc--ccaaactactgttgttatagatatgtaaaactatatggtataaggttaaacaacgcacaactaattaacagtgaagataaattaactaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30355720 299 + 173848474 --------------CTGAAGCACCTTTAAATGAGGCCAAAGACCTCATGTTCATGATTAGCTGACTTGTTCCCACTCAGTGGGAAAAAAAACC-CAGAACTTTTGCAAAAT-TTTAGGAGAGAGGGATTT-CCCTC------TTGTCTCttagtgctacggttatgcacgactcatacttgaattgcaatgtggacacagcttaaggacttaactattagaatacaagaggc--ccaaactactgttgttatagatatgtaaaactatatggtataaggttaaacaacgcacaactaattaacagtgaagataaattaactaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      11728 299 +   2037526 --------------ctgaagcaCCTttaaatgaggccaaagacctcatgttcatgattagctgatttgttcccactcagtggaaaaaaaaacc-cagaacttttgcaaaat-tttaggagagagggattt-ccctc------ttgtctcttagtgctacggttatgcatgactcatacttgaattgcaatgtgtacacaacttaaggacttaactattagaatacaagaggc--ccaaactactgttgttatagatatgtaaaactatacggtatgaggttaaacgacccacaacgaattaacagtgaagataaattaactaca
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30600260 303 + 172585720 --------------CTGAATCACCTttagatgaggccaaagacctcacgttcctcactagctgacttattcccactcagtggaaaaagaa--ctcagaaccttcgcaaaat-tttaggagagagaaactt--tccctctagtttgtctcatagtgctagggttatgcatgactcatgcttgaattgcaatgtggacacagcttccagtcttaattattagaatataagaggc--ccaaactactgttgttatagatatgtaaaactacacagtacaaaattaaacaacccacaaccaattaacagtggagataaattaactcca
i rheMac8.chr4             I 14 I 1
s cerAty1.NW_012002535v1     172227 296 -    863181 --------------CTGAAGCACCTTTACATGgggccaaagacctcatgttcatgattagctgacttgttcccactcagtggaaaaaaaa--c-caaaacttttgcaatat-tttaggagagagggattt--cgtc------ttgtctcttagtgctagcattatgcatgactcattcttgaattgcaatgtgtacacagcttaaagtcttaattattagaatatgagaggc--ccaaactactgttgttatagttatgtaaaactatacagtataaggttaaacaacccgcaaccaattaacagtgaagataaattaactaca
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     171867 296 +    273075 --------------CTGAAGCACCTTTACATGgggccaaagacctcatgttcatgattagctgacttgttcccactcagtggaaaaaaaa--c-caaaactcttgcaatat-tttaggcgagagggattt--cgtc------ttgtctcttagtgctagcattatgcatgactcattcttgaattgcaatgtgtacacagcttaaagtcttaattattagaatatgagaggc--ccaaactactgttgttatagttatgtaaaactatacagtataaggttaaacaacccgcaaccaattaacagtgaagataaattaactaca
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     453549 297 -   1771730 --------------CTGAAGCACCTCtagatgaggccagagacctcatattcctcattagctgacttgttcccactcagcagaaaaagaa-cc-cagaaactttgtaaaat-tttgcaggagagggactttccctt------ttgactcttagtaccagggttatgcatgacttatacttgcattgtgatgtgtacacagcttgaagtcttaattagtagaatatgagaggc--ccaaatgactgttgttatagatatgtgaaactatata-cataaggttaaacaactggcaaccaattaacattgaagataaaatatc-aca
i cebCap1.NW_016107755v1   I 53 I 1
s otoGar3.GL873550         17116315 287 -  18854210 CTCACAGTTAGGGGCTGAAA-AAATTCAGATGATGACAGAGACCTCACATTCCCCATCAGCTGACTTGTTCCCACTCAGTGGAAAAAGGA-CC-AAGAACGTTTGTAAAATGTTTAGGGGAGAAGAGCTTTCCCTC------TTGTCTTTTGGTGACAGGGTTATGCATGCCTCATGCTTGAAATGCAGTGTGT----------------------------TACAAAAGACATCCAAACTACCACAGTTACAGATGTGTGAAACTATCCAGTGTGAAGTAAAGGAACACACCACCGACTAACACCGAAGCTAAACTAACCGCA
i otoGar3.GL873550         C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e nomLeu3.chr1a            74707037 1027 + 122973662 I

a score=515955.000000
s hg38.chr6_GL000254v2_alt  1167163 196 +   4827813 -ttgcaaatttaaaacaagattagcagccctttagaaaaaa-aacaaaacacatgggaggttgcaaaggcaatctaaatgatactctaataaaa---atccttcatgaaaat-gacatttcaaccctctgAGTTTCTGCTT------------------------------TAAG-------TTATGAACTCCAAAATGGACTAACACCCAATAATTTACAGTAGGGAGGTCTAAGCCA
s panTro5.chr6             30125344 196 + 175400573 -ttgcaaatttaaaacaagattagcagccctttagaaaata-aacaaaacacatgggaggttgcaaaggcaatctaaatgatactctaataaaa---atccttcatgaaaat-gacatttcaaccatctgAGTTTCTGCTT------------------------------TAAG-------TTATGAACTCCAAAATGGACTAACACCCAGTAATTTACAGTAGGGAGGTCTAAGCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30356019 196 + 173848474 -ttgcaaatttaaaacaagattagcagccctttagaaaata-aacaaaacacatgggaggttgcaaaggcaatctaaatgatactctaataaaa---atccttcatgaaaat-gacatttcaaccatctgAGTTTCTGCTT------------------------------TAAG-------TTATGAACTCCAAAATGGACTAACACCCAGTAATTTACAGTAGGGAGGTCTAAGCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      12027 196 +   2037526 -ttgcaaatttaaaacaagattagcagccctttagaaaaaa-aacaaaacacatgggaggttgcaaaggcaatctaaatgatactctaataaaa---atccttcatgaaaat-gacatttcaaccatctgAGTTTCTGCTT------------------------------TAAG-------TTATGAACTCCAAAATGGACTAACACCCAATAATTTACAGTAGGGAGGTCTAAGCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74708064 197 + 122973662 -ttgtaaatttaaaacaagatcgacagccatttagaaaaaacaaaacgacaaatgagacttttgcaagacagtctatatgatatgctaataaca---aagcttcatgaaaat-GACATTTTGACCGTCTTAGTTTTGGCTT------------------------------TAGG-------TTATAAACTCCAAAATGGACTAACCCTAAATAATTCACAGTAGGGAGCCCTAAGCCA
i nomLeu3.chr1a            I 1027 C 0
s rheMac8.chr4             30600564 194 + 172585720 -ttgtaaatttagaacaagatcgacagtcatttagaaaaaa-a--gatacaaataagacttttgcaagacagtctacatgatatgctaataaca---aagcttcatgaaaat-gacatttcaaccatctTAGTTTTGGCTT------------------------------TAGG-------TTATAGACTCCAAAATGGACTAACCCCAAATAATTTACAGTAGGGAGCCCTAAGCCA
i rheMac8.chr4             I 1 C 0
s cerAty1.NW_012002535v1     172523 196 -    863181 -ttgcaaatgtaaaacaagattggcagccctttaggaaaaa-aacaaaacacatgagacgttgcaaaggcaatctaaatgatacactaataaaa---atccttcatgaaaat-cacatttcaaccatctgAGTTTCTGCTT------------------------------TAAG-------TTACAAACTGCAAAATGGACTAACCCCCAATAATTGACAGTAGGGAGCCCTAAGCCA
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     172163 196 +    273075 -ttgcaaatgtaaaacaagattggcagccctttaggaaaaa-aacaaaacacatgagacgttgcaaaggcaatctaaatgatacactaataaaa---atccttcatgaaaat-cacatttcaaccatctgAGTTTCTGCTT------------------------------TAAG-------TTACAAACTGCAAAATGGACTAACCCCCAATAATTGACAGTAGGGAGCCCTAAGCCA
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     453847 191 -   1771730 -ttgtaaatttaaaagaatattggcagccactaggaaaaaa-a----cacaagtgagacttttacaagacaatataaataatactttgataaca---atcctttgtgaaaat-gacatttcaaccatcAATGTTTCTGCTT------------------------------TAGG-------TTATAAG-TCCAAAATGGGGTAAACCCCAGTAATTTACATTAGGGAGCTCTAAGCCA
i cebCap1.NW_016107755v1   I 1 C 0
s otoGar3.GL873550         17116602 224 -  18854210 TTTGTAA------------ATTAGCACCTACTGAGACAAAA-GGCC-AGCAAATGAGGCTCCTGCAAGAAAATGTAAATCATGTAGTGACCAGAGGTGTCCTTC-TGATGCTGGACTTTCCAACCATCTAAGTTTCTTCTTAGATGAACTCTGTTTCTTCCTCCAACCATCTAAACTTCTTCTTATGAACTCTGTAATGGACTGACCCCCAATAATTTATGGTAAGTCATCTTAAACCA
i otoGar3.GL873550         C 0 N 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T

a score=250009.000000
s hg38.chr6_GL000254v2_alt  1167359 104 +   4827813 CCAAGAAAGGTGTCAGGGCAGACCTGAAACCTGGAATGAACACGCCCCCTCTCTCAGGGTAATGAGTAAATCCTCTAAGACCCGTTCTATCTCAGACAGACCAT
s panTro5.chr6             30125540 104 + 175400573 CAAAGAAAGGTGTCAGGGCAGACCTGAAACCTGGAATGAACACGCCCCCTCTCTCAGGGTAATGAGTAAATCCTCTAAGACCCGTTCTATCTCAGACAGATCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30356215 104 + 173848474 CCAAGAAAGGTGTCAGGGCAGACCTGAAACCTGGAATGAACATGCCCCCTCTCTCAGGGTAATGAGTAAATCCTCTAAGACCCGTTCTATCTCAGACAGACCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      12223 104 +   2037526 CCAAGAAAGGTGTCAGGGCAGACCTGAAATGTGGAATGAACACGCCCCCTCTCTCAGGGTAATGAGTAAATCCTCTAAGACCCGTTCTATCTCAGACAGACCAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74708261 104 + 122973662 CAAAGAAAGGTGTCAGGGAAGACCTGAGACCTGGAGTAAACTCACACCCTCCCTCAGGGTCCCGAGTGAATCCTCTCAGACCCCTCCTCCCTCAGACACTCCAC
i nomLeu3.chr1a            C 0 N 0
s rheMac8.chr4             30600758 102 + 172585720 GAAAGAAAGGTGTCAGGGCAGACCTGGGACCTGGAGTGAGCACA--CCCTCCCTCAGGGATACAAGTGAATTCTCTAAGACCCCTCCTGCCTCAGACACTCCAT
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     172719  98 -    863181 CAA------GTGTCAGGGCAGACCTGAAACCTGGAGTGAACACATGCCCTCCCTCAGGGTCACGAGTCAATCCTCTAAGACCCCTGCTATCTCAGACAGACCAT
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     172359  98 +    273075 CAA------GTGTCAGGGCAGACCTGAAACCTGGAGTGAACACATGCCCTCCCTCAGGGTCACGAGTCAATCCTCTAAGACCCCTGCTATCTCAGACAGACCAT
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     454038 102 -   1771730 TAAAGAAAGGCATCAGAGCAGACCTGAGATCTGGAGTGAGCACAC-Ccctccctcagggtcatgagtgaatcctctaagaccc-tcctccctcagacactccat
i cebCap1.NW_016107755v1   C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T

a score=550573.000000
s hg38.chr6_GL000254v2_alt  1167463 268 +   4827813 CCACTCATAAGGAGGTCAAAAGAAAGTTCCACACAGCACTGAGACCCAACCACCTCATTGTCCTCACCTCCACGGACAGAGCCCAGGTGA-AGCCacccctgctcctcctccctcatctcccacagcctcagcaccattgtctgcgctaagtccaccaggactcagctcatcatatcctttccctgtttgtgtcagtgacactgggtcccccacatactctgcactcacatccccacaaggctctgcacaccactattctgtctcccca
s panTro5.chr6             30125644 269 + 175400573 CCACTCATAAGGAGGTCAAAAAAAAGTTCCACACAGCACTGAGACCCAACCACCTCATTGTCCTCACCTCCATGGACAGAGCCCAGGTGAGAGCCacccctgctcctcctccctcatctcccacagcctcagcaccattgtctgcaccaagtccaccaggactcagctcatcatgtcctttccctgtttgtggcagtgacactgggtcccccacataatctgcactcacatccccacaaggctctgcacaccactattctgtctcccca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30356319 269 + 173848474 CCACTCATAAGGAGGTCAAAAAAAAGTTCCACACAGCACTGAGACCCAACCACCTCATTGTCCTCACTTCCACGGACAGAGCCCAGGTGAGAGCCacccctgctcctcctcccttgtctcccacagcctcagcaccattgtctgtgccgagtccaccaggactcagctcatcatgtcctttccctgtttgtgtcagtgacactgggtcccccacatactctgcactcacatccccacaaggctctgcacaccactattctgtctcccca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      12327 268 +   2037526 CCACTCATAAGGAGGTCAAAAAAAAGTTCCACACAGCACTGAGA-CCAACTACCTCATTGTCCTCACCTCCATGGACAGAGCCCAGGTGAGAGCCacccctgctcctcctccctcatctcccacagcctcagcaccagtgtctgcgccgagtccaccaggactcagctcatcatgtcctttccctgtttgtgtcagtgacactgggtcccccacatactctgcactcacatccccacaaggctctacacaccactattctgtctcccca
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30600860 256 + 172585720 CCATC---------ATCAGAAGA----TCCACACAGCACTAAGACCCAACCACTCCACCGTCCTCACCTCAATGGATAGACCCCAGGTGAGAGCCacccctgctcctcctcccgcttcaaccacagcctcagcaccatcgtcagccttgagtccaccaggactgagctccttatgccctttccctgtttgtgtcagtcacactgggtcccccacattccctgcactcacatccccacaaggctctgcacactcctattctgtccccaca
i rheMac8.chr4             C 0 I 15
s cerAty1.NW_012002535v1     172817 267 -    863181 CCACTCATA--GAGGTCAAAAAAATGTTCCACACAGCCCTGAGACCCAATCACCTCACTGTCCTCACTTCCATGGACAGAGCCCAGGTGAGAGCCacccctgctcctcctccctcgtctcccacagcctcagcaccatcatttgcttcgagtccaccaggactgagctcctcacaccctttccctgttggtgtcagtcacactgggtctcccacatactctgcacttgcatcctcacaaggctctacacacctctattctgtctcctcg
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     172457 267 +    273075 CCACTCATA--GAGGTCAAAAAAAAGTTCCACACAGCCCTGAGACCCAATCACCTCACTGTCCTCACTTCCATGGACAGAGCCCAGGTGAGAGCCacccctgctcctcctccctcgtctcccacagcctcagcaccatcgtttgcttcgagttcaccaggactgagctcctcacaccctttccctgttggtgtcagtcacactgggtctcccacataccctgcacttgcatcctcacaaggctctacacacctctattctgtctcctcg
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     454140 256 -   1771730 ccagtcatcaggagg------------cccacacagaactgagacccaaccacccctccatcctcacctccatggacagagcccaggtgaaagtca-ccctgctcctcctccctcatctcccacagcctcagcaccattgtcagcctcaagtccactagaaattcgctcattatggcctttccctgtttgtgtcactcatgctgggtccctccaataccctgcattcgcatccacacaaggctctgcacacccctattctgtacctcca
i cebCap1.NW_016107755v1   C 0 I 97
e colAng1.NW_012115577v1      53175 22804 -   1829203 T

a score=9559.000000
s hg38.chr6_GL000254v2_alt  1167731 8 +   4827813 acctccca
s panTro5.chr6             30125913 8 + 175400573 acctcccg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30356588 8 + 173848474 acctcccg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      12595 8 +   2037526 acctcccg
i gorGor5.CYUI01015528v1   C 0 C 0
s cerAty1.NW_012002535v1     173084 8 -    863181 acctcccc
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     172724 8 +    273075 acctcccc
i manLeu1.NW_012101121v1   C 0 C 0
e cebCap1.NW_016107755v1     454396 97 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e rheMac8.chr4             30601116 15 + 172585720 I

a score=157787.000000
s hg38.chr6_GL000254v2_alt  1167739 101 +   4827813 aaccacagaaatcttcccagtgcaccccctggaat-ctcagtcaatgatcaacaaaacctccacaccctctctcaggatgttcctgcacctcccagctccag
s panTro5.chr6             30125921 101 + 175400573 aaccacagaaatcttcccagtgcaccccctggaat-ctcagtccttgatcagcaaaacctccacaccctctctcaggatgttcctgcacctcacagctccag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30356596 101 + 173848474 aaccacagaaatcttcccagtgcaccccctggaat-ctcagtcaatgatcagcaaaacctccacaccctctctcaggatgttcctgcacctcacagctccag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      12603 100 +   2037526 aaccacagaaatcttcccagtgca-cccctggaat-ctcagtcaatgatcagcaaaacctccacaccctctctcaggatgttcctgcacctcacagctccag
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30601131 101 + 172585720 aactccagaaatcttcccactgcaccccttggaatccagagtccacgatcagcaaaatctcctcattct-tctcaggatgttccctcacctcgaagctctag
i rheMac8.chr4             I 15 C 0
s cerAty1.NW_012002535v1     173092 102 -    863181 aaccacataaatcttcccagtgcaccccctggatttcttggtccatgatcagcaaaacctcctcatcctgtctcaggatgttcctgcacctcacagctccag
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     172732 102 +    273075 aaccacataaatcttcccagtgcaccccctggatttctcggtccatgatcagcaaaacctcctcatcctgtctgaggatgttcctgcacctcacagctccaa
i manLeu1.NW_012101121v1   C 0 C 0
e cebCap1.NW_016107755v1     454396  97 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T

a score=1185407.000000
s hg38.chr6_GL000254v2_alt  1167840 583 +   4827813 cagcaacct-ggtctccctgaggacatgaccccctctgaagtcctcccacataggggagtttcccccatggacttgtacccctgggttcagaggtgaggtggggaccttgctcctcactgtggttctcagaactttctgcctccctcctccctaaaacccctaggctgtcatcagattagacccccattcccctcattgtagccattccctgt---gggcccctggcctttcctctcaatcctgactcttgtagctcttggttcactgtcaccctctccagca-----gtctccttgactgttggtgacttcaac--------atgtggtgggctgagtaatggtcccgaaagaggtccagtcttagtccttggaacctgtgaacaggttgcattacatggcaaaagggactttactcatgtaatgacgattaaggaccttaaaatagggagattctcctggacaatctgtgtggccccattcaaatcaaatgagccactaaaagcagagaacctgccctggctggagtcagattctgcagaggaggaaggcagaggagacatagaagaggggaggtcagacgttccaagcaggaggatt
s panTro5.chr6             30126022 583 + 175400573 cagcaacct-ggtctccctgaggacatgaccccctccgaagtcctcccacataggggagtttcccccatggacttgtacccctgggttcagaggtgaggtggggtccttgctcctcactgtggttctcagaactttctgcctccctcctcccaaaaacccctaagctgtcatcagattagacccccattcccctcattgtagccattccctgt---gggcccctggcctttcctctcaatcctgactcttgtagctcttggttcactgtcaccctctccagca-----gtctccttgactgttggtgacttcaac--------atgtggtgggctgagtaatggtcccgaaagaggtccagtcttagtccttggaacctgtgaacaggtcgcattacatggcaaaagggactttactcatgtaatgatgattaaggaccttaaaatagggagattctcctggacaatctgtgtggccccagtcaaatcaaatgagccactaaaagcagagaacctgccctggctggagtcagattctgcagaggaggaaggcagaggagacatagaagaggggaggtcagacgttccaagcaggaggatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30356697 578 + 173848474 cagcaacct-ggtctccctgaggacatgaccccctccgaagtcctcccacataggggagtttcccccatggacttgtacccctgggttcagaggtgaggtggggtccttgctcctcactgtggttctcagaactttctgcctcccttctccctaaaacccctaagctgtcatcagattagacccccattcccctcattgtagccattccctgt---gggcccctggcctt-----tcaatcctgactcttgtagctcttggttcactgtcaccctctccagca-----gtctccttgactattggtgacttcaac--------atgtggtgggctgagtaatggtcccgaaagaggtccagtcttagtccttggaatctgtgaacaggtcgcattacatggtaaaagggactttactcatgtaatgatgattaaggaccttaaaatagggagattctcctggacaatctgtgtggccccaatcaaatcaaatgagccactaaaagcagagaacctgccctggctggagtcagattctgcagaggaggaaggcagaggagacatagaagaggggaggtcagacgttccaagcaggaggatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      12703 583 +   2037526 cagcaacct-ggtctccctgaggacatgaccccctccgaagtcctcccacataggggagtttcccccatggacttgtacccctgggttcagaggtgaggtggggaccttgctcctcgctgtggttctcagaactttctgcctccctcctccctaaaacccctaagctgtcatcagattagacccccattccgctcattgtagccattccctgt---gggcccctggcctttcctctcaatcctgactcttgtagctcttggttcactgtcaccctctccagca-----gtctccttgactgttggtgacttcaac--------atgtggtgggctgagtaatggtcccgaaagaggtccagtcttagtccttggaacctgtgaacaggttgcattacatggcaaaagggactttactcatgtaatgacgattaaggaccttaaaatagggagattctcacggacaatctgtgtggccccattcaaatcaaatgagccactaaaagcagagaacctgccctggctggagtcagattctgcagaggaggaaggcagaggagacatagaagaggggaggtcagacgttccaagcaggaggatt
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30601232 589 + 172585720 caggaacctgggccttcctgag-----gaccccctctgaagttcctccatatgggggagttt--cccaggaacttgtacccctggcttcagagatgaggtggggtccttgctcctcactgtggttctcagacctttctgcctccctcctccctaaaacccctaagctgtcatcagacta-ggccccacttccctcactgtagccattctctgt---gggccccaggccgttcctttcaatcctgactcttgtagctcctggatcaccatcaccatcttcagcagggctgtctccttgattctttgtgactttgacatatgcagatgtggcaggctgagtaatagtccccaaagaggtccagtcttagcccttggaacctgtgaacagcttgcattacatggcaaaagggacattactcatgtaatgaagataaaggactttaaaatagggagattatcctggactctctgtgtgggcccaatcaaatcacatgagccattaaaagtagagaatctgctctggatggagtcagatgctgcagaggaggaaggcagaggagacacagcaaagggaagatcagaggttccaaggaggaggact
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     173194 579 -    863181 cagcaacctgggtctccctgaggacatgaccccctccgaagtcctctcacatggaggagttt----------------ccccagggttcagaggtgaggtggggtccttgctcctcactgtggttctcagaactttctgcctccctcctccctaaaacccctaagctgtcatcagattagggccccattcccctcgttgtaaccattccctgt---gggccacaggccgttcttctcaatcctcagtctc-tagctcagagttcactgtcaccctctccaggagtgctgtctccttgactcttggtgacttcaacatGTGCAGAtgtgctgggctgagtaacggtccccaaagatgtccagtcttaatcgttggaacatctgaacagcttacattgcatgacaaaagggacattactcatgtaatgaagattaaggaccttaaaagagggagagtatcctggactctctgtgtgggcccaatcaaatcacaagagccattaaaagcagagagcctgccctggttggagtcagattctgcagaggaggaa-gcagaggagactcAGGAGAGGAGCGGTCAGAAGTGCCAAGCAGGAGGATT
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     172834 579 +    273075 cagcaacctgggtctccctgaggacatgaccccctccgaagtcctcccacatggaggagttt----------------ccctagggttcagaggtgaggtggggtccttgctcttcactgtggttctcagaactttctgcctccctcctccctaaaacccctaagctgtcatcagattagggccccattcccctcgttgtaaccattccttgt---gggccgcaggccattcttctcaatcctcagtctc-tagctcagagttcactgtcaccctctccaggagtgctgtctccttgactcttggtgacttcaacatGTGCAGAtgtgctgggctgagtaacggtccccaaagatgtccagtcttaatcgttggaacatctgaacagcttacattgcatgacaaaagggacattactcatgtaatgaagattaaggaccttaaaagagggagagtatcctggactctctgtgtgggcccaatcaaatcacaagagccattaaaagcagagagcctgccctggttggagtcagattctgcagaggaggaa-gcagaggagactcAGGAGAGGAGCGGTCAGAAGTGCCAAGCAGGAGGATT
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     454493 584 -   1771730 caggaacctgggtcttcctgaagacatgg-cttctcctaagtcttcccacatgggggactttccccaggaatcttgtaccc-tgggcccagaggtagggtggggtccttgctcttcactgtgattctcagacctttctgcttccctgctccctaaaacccctaagctgttatcag-ttatggtcccactcccctcactgcagccattccctgtgacgggtcccaggccgttactctcaatcctgactcttgtagctcctggttcactgtcaccccctccagcagggctctctccttgatccttggtgagttcaacatatgcagatgtgatgggctgagtgatggtccccaaa---gtccaatctcagttcctgggaattatgaagaggttgcattacatga-aaaataaacattattcatgtaatgaagattaaggaccttaaaatagggagattatcc-agactatctgtgtgggcccagtcaaatcacatgagccattacacg--------ctgctctggctggagtcagctgctgcagaggaggaaggcagaggagacacagcagaggggagatcaaaggttccaagtgggaggatt
i cebCap1.NW_016107755v1   I 97 I 95
e colAng1.NW_012115577v1      53175 22804 -   1829203 T

a score=92890.000000
s hg38.chr6_GL000254v2_alt  1168423 52 +   4827813 ggatgtgccttaggcaccatgtgtgagtagctgaaagaagattctaggagct
s panTro5.chr6             30126605 52 + 175400573 ggatgtgccttaggcaccatgtgtgagtagctgaaagaagattctaggagct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30357275 52 + 173848474 ggatgtgccttaggcaccatgtgtgagtagctgaaagaagattctaggagct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      13286 52 +   2037526 ggatgtgccttaggcaccatgtgtgagtagctgaaagaagattctaggagct
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30601821 52 + 172585720 ggatgtgctttaggcaccatacgtgagtagcagagagaagtctctaggagct
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     173773 52 -    863181 GGATGCGCCTTAGGCACCATGtgtgagtacctgagagaagactctaggagct
i cerAty1.NW_012002535v1   C 0 I 338
s manLeu1.NW_012101121v1     173413 52 +    273075 GGATGCGCCTTAGGCACCATGtgtgagtacctgagagaagactctaggagct
i manLeu1.NW_012101121v1   C 0 I 4
e cebCap1.NW_016107755v1     455077 95 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T

a score=35327.000000
s hg38.chr6_GL000254v2_alt  1168475 46 +   4827813 aagcatggctcttaacaaggaagtggaaacctctgttctatgtgca
s panTro5.chr6             30126657 46 + 175400573 aagggtggctcttaacaaggaagtggaaacctctgttctatgtgca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30357327 46 + 173848474 aagggtggctcttaacaaggaagtggaaacctctgttctatgtgca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      13338 45 +   2037526 aaggatggctcttaacaaggaa-tggaaacctctgttctatgtgca
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30601873 46 + 172585720 aagggtggctcccaacaagaaagtgggaagctctgttctctctgca
i rheMac8.chr4             C 0 C 0
e cebCap1.NW_016107755v1     455077 95 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     173465  4 +    273075 I
e cerAty1.NW_012002535v1     173825 338 -    863181 I

a score=144290.000000
s hg38.chr6_GL000254v2_alt  1168521 124 +   4827813 aggaagtgaattcagacaagaacctgaatgagcttggaaatggattcttccccagagtctccaggagggaacacagacctgcccataccttgatcttagccccataagactgtg-tggacttgca
s panTro5.chr6             30126703 124 + 175400573 agaaagtgaattcagacaagaacctgaatgagcttggaagtggattcttccccagagtctccaggaaggaacacagacctgcccataccttgaccttagccccataagactgtg-cagacttgca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30357373 124 + 173848474 agaaagtgaattcagacaagaacctgaatgagcttggaagtggattcttccccagagtctccaggaaggaacacagacctgcccataccttgaccttagccccataagactgtg-cagacttgca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      13383 124 +   2037526 aggaagtgaattcagacaagaacctgaatgagcttggaaatggattcttccccagagtctccaggagggaacacagacctgcccataccttgatcttagccccataagactgtg-cagacttgca
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30601919 123 + 172585720 aggaggtgaattcagacaagaa-ctgaatgagcttggatgtggattcttccccagaatctccaggaaggaacacagacttgtccataccatgatcttagccgcatgagactgtg-tggacttgca
i rheMac8.chr4             C 0 C 0
s cebCap1.NW_016107755v1     455172 123 -   1771730 acaaagtgaattccgataagaacctgaataagcttggaagtgcagtcttccccag--tctccatgaaggaacacagacctgcccagatcttgattttactcccttgagactgtgttggacttgca
i cebCap1.NW_016107755v1   I 95 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e manLeu1.NW_012101121v1     173465   4 +    273075 I
e cerAty1.NW_012002535v1     173825 338 -    863181 I

a score=306292.000000
s hg38.chr6_GL000254v2_alt  1168645 187 +   4827813 acctacaggactgtaacatgataattaggtgctgtttaaagccacttggtttgtggtaattcttatggcagcaatagacacctatacagcagagaagatgcccttgctccctggactctcagatcctggaactcctctcctccatgaccttctcctctctctgcctgaatctcatgcccctgtcatc
s panTro5.chr6             30126827 187 + 175400573 acctacaggactgtaacatgataattaggtgctgtttaaagccagttggtttgtggtaatttttatggcagcaatagacacctatacagcagagaagatgcccttgctccctggactctcagatcctggaactcctctcctccatgaccttctcctctctctgcctgaatctcgtgcccctgtcatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30357497 187 + 173848474 acctacaggactgtaacatgataactaggtgctgtttaaagccagttggtttgtggtaatttttatggcagcaatagacacctatacagcagagaagatgcccttgctccctggactctcagatcctggaactcctctcctccatgaccttctcctctctctgcctgaatctcgtgcccctgtcatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      13507 187 +   2037526 acctacaggactgtgacatgataattaggtgctgtttaaagccacttggtttgtggtaatttttatggcagcaatagacacctatacagcagagaagatgcccttgctccctggactctcagatcctggaactcctgtcctccatgaccttctcctctctctgcctgaatctcgtgcccctgtcatc
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30602042 187 + 172585720 gcccacaggactgtggcatgataattaggtgctgtttaaagctgcttggtttgtggtaatttttatggcagcaatagacacctatacagcagagaagatgtccatgctccatggcctctcaggtcctggaactcctttccttcataaccatgtcctctctctgcctgaatctcatgcccttcttatc
i rheMac8.chr4             C 0 C 0
s manLeu1.NW_012101121v1     173469 186 +    273075 acccacaggactgtgacatgataatta-gtgctgtttaaagtcacttggtttgtggtaatttttatggcagcaatagacacccatacaGcagagaagatgccctcactccctggcctctcagatcctggaactcctctcttccatgacgttctcctctctctgtctgaatctcgtgcccttgtcatc
i manLeu1.NW_012101121v1   I 4 C 0
s cebCap1.NW_016107755v1     455295 186 -   1771730 tcccacatggttgtgacatgataaacaggtg-tgtttaaagccactgggcttgtattaatttttacggcaaaaattgacactcatacagcagagcggatggcctcattccctggcctctcagaacctggaactcctctcttccatgaccttctcctctctctacctgggccccacacccttgtcacc
i cebCap1.NW_016107755v1   C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T
e cerAty1.NW_012002535v1     173825 338 -    863181 I

a score=495602.000000
s hg38.chr6_GL000254v2_alt  1168832 242 +   4827813 ccctaggcctcatcatgcccaagaacc--------------------------------------------------------------------------ccagcccttccatactctcaatttcacacttcccactctctggccatctttccactcat-cccatgcaaggtggccacaggctctgaggacacagactctatcattttatcatatgctgtgaggtaatatcagtg-actactcattgcatatgtgcctgcattccaggcttgaagtccaccctttagcacatcaattccaacaatccttcgaccc--cc
s panTro5.chr6             30127014 242 + 175400573 ccctaggcctcatcatgcccaagaacc--------------------------------------------------------------------------ccagcccttccatactctcaatttcacacttcccactctctggctatctttccactcat-ctcatgcaaggtggccacaggctctgaggacacagactctatcattttatcatatgctgtgaggtaatatcagtg-actactcattgcatatgtgcctgcattccaggcttgaagtccaccctttagcacatcaattccaacaatccttcgaccc--cc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30357684 242 + 173848474 ccctaggcctcatcatgcccaagaacc--------------------------------------------------------------------------ccagcccttccatactctcaatttcacacttcccactctctggctatctttccactcat-cccatgcaaggtggccacaggctctgaggacacagactctatcattttatcatatgctgtgaggtaatatcagtg-actactcattgcatatgtgcctgcattccaggcttgaagtccaccctttagcacatcaattccaacaatccttcgaccc--cc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      13694 240 +   2037526 ccctaggcctcatcatgcccaagaacc--------------------------------------------------------------------------ccagcccttccatactctcaatttcacacttcccactctctggccatctttccactcat-cccatgcaaggtggccacaggctctgaggacacagactctatcattttatcatatgctg-gtggtaatatcagtg-actactcattgcatatttgcctgcattccaggcttgaagtccaccctttagcacatcaa-tccaacaatccttcgaccc--cc
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30602229 243 + 172585720 ccctaggcttcctcatggcaaagaacc--------------------------------------------------------------------------ccagcccttccacactctcaatttcacacttcccactctcccaccatcttttcactcat-cccttgtagggtagacacaggctctgaggacactgatactattattttatcatatgctgtgatgtaatatcagtgaaacactcattgcttatgtgactgctttccaggcgtggagtccattctgtagtacatcaattccaacaatccttccaccccc--
i rheMac8.chr4             C 0 N 0
s cerAty1.NW_012002535v1     174163 240 -    863181 ccctaggcctcatcatggccaagaact--------------------------------------------------------------------------ccagcccttccatactctcaatttcacacttctcactctctgaccatctttccactcat-cccatacaaggtggccacaggctctgaggacatagatactatcattttatcatatgctgtgatgtaatatcagtg-actactcattgcctatgtgcctgcattccaggcttgaagtctacccttcagcacatcaattccaacaatccttccaccc----
i cerAty1.NW_012002535v1   I 338 C 0
s manLeu1.NW_012101121v1     173655 314 +    273075 ccctaggcctcatcatggccaagaaccccaacccttccatgctctcaatctcacactttccactttctgatgagccctaggcctcatcatggccaagaactccagcccttccatactctcaatttcacacttctcactctctgaccatctttccactgat-cccatacaaggtggccacaggctctgaggacatagatactatcattttatcatatgctgtgatgtaatatcagtg-actactcattgtatatgtgcctgcattccaggcttgaagtctacccttcagcacatcaattccaacaatccttccaccc----
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     455481 237 -   1771730 tcctcagtcttgtcatagccaatgacc--------------------------------------------------------------------------ccagcccttccatactctccatctcacacctcccactctctgaccatctttccactcatccccttgcagggcgggcacaggctctgaggacacag-----atcattttatcgtatgctgtgatgtaatatcactgaaccacacattgcatatgtgcctgctttcccggcttggtgtccaccctgtagtatatcagctccaacaatccttccaacc----
i cebCap1.NW_016107755v1   C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T

a score=104450.000000
s hg38.chr6_GL000254v2_alt  1169074 62 +   4827813 accctgggaataccaatccagtgattccaccatctactcactgtccctcatcgttggtgtct
s panTro5.chr6             30127256 62 + 175400573 accctgggaataccaatccagtgattctgccatctactcactgtccctcatcgttggtgtct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30357926 62 + 173848474 accctgggaataccaatccagtgattctgccatctactcactgtccctcatcgttggtgtct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      13934 61 +   2037526 accctgggaataccaatccagtgattctgccatctactcactgt-cctcatcgttggtgtct
i gorGor5.CYUI01015528v1   C 0 C 0
s cerAty1.NW_012002535v1     174403 62 -    863181 accctgggattaccaatcctgtgatcctgccatctactcactgtccctcacccttggtgtcc
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     173969 62 +    273075 accctgggattaccaatcctgtgatcctgccatctactcactgtccctcacccttggtgtcc
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     455718 61 -   1771730 -ccccgggattcccaatctagtgatcctgccatctactcactgtccctcacccttggtgtcc
i cebCap1.NW_016107755v1   C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T

a score=9779.000000
s hg38.chr6_GL000254v2_alt  1169136 4 +   4827813 tctc
s panTro5.chr6             30127318 4 + 175400573 tctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30357988 4 + 173848474 tctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      13995 4 +   2037526 tctc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74825901 4 + 122973662 tctt
i nomLeu3.chr1a            N 0 C 0
s cerAty1.NW_012002535v1     174465 4 -    863181 tctc
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     174031 4 +    273075 tctc
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     455779 4 -   1771730 tctc
i cebCap1.NW_016107755v1   C 0 I 218
e colAng1.NW_012115577v1      53175 22804 -   1829203 T

a score=48478.000000
s hg38.chr6_GL000254v2_alt  1169140 31 +   4827813 taacttcatga-cccaaaccacatggggagcc
s panTro5.chr6             30127322 31 + 175400573 taacttcatga-cccaaaccacatggggagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30357992 31 + 173848474 taacttcatga-cccaaaccacatggggagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      13999 30 +   2037526 taacttcatga-cccaaaccacatgtggag-c
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74825905 32 + 122973662 taaatttaagattccaaacctcatggggagcc
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     174469 31 -    863181 taacttcatga-cccaaaccacatggggaacc
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     174035 31 +    273075 taacttcatga-cccaaaccacatggggaacc
i manLeu1.NW_012101121v1   C 0 C 0
e cebCap1.NW_016107755v1     455783 218 -   1771730 I
e colAng1.NW_012115577v1      53175 22804 -   1829203 T

a score=33881.000000
s hg38.chr6_GL000254v2_alt  1169171 17 +   4827813 cccacca------gggccagcaa
s panTro5.chr6             30127353 17 + 175400573 cccacca------gggccagcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30358023 17 + 173848474 cccacca------gggccagcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      14029 17 +   2037526 cccacca------gggccagcaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74825937 23 + 122973662 cctagcattgatgtgggcagcaa
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     174500 17 -    863181 cccacca------tggccagcaa
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     174066 17 +    273075 cccacca------tggccagcaa
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     456001 17 -   1771730 cccacca------tggccagcag
i cebCap1.NW_016107755v1   I 218 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T

a score=5318134.000000
s hg38.chr6_GL000254v2_alt  1169188 1932 +   4827813 tcaccctctccctgcatggctcaccctcagcctcctcctggcctgggtgacccttacacaccttctctctgtgctcacacatccaaccctccttccccattcttatctcagctgacaaccttggttcctacctcactgagaaaactgaacacattagaag--------acagattccatcaccatctgctcatgcatttgcagctgcaacacatgtcaggtgttttaccatgttggggactgttgtgggtaaaccattctgctccca-tcagagccagtccctcttctggtgcccaaaatgtcatcccttatcatctacttaaaggtgtcagttcatcaattaatac-c---tttttttctctttatcatcaacctttttcctctctccccactggatcattgtggcagtcatgagaatgcacatcccagcccctcagctagagtaagcagaattgatagtggcctcaacttttgaatcctgaaacctattgccacatttgctctgagaccacacctgccccctgtcttttcctgccaatgactgaggaaagcagggcagaaactaaggcaggaacatttcttctctgaaggctgactgaagctctagggcttcctgccacgcttactgaacttctgttagcctgcacagggtctaggatgcttccagctgaccttcctgcactgtttacctcactggggctc-agagttgctttgtggtctgatgacattcccagcattttccgtctgtgtcctgaatttctctcataacta-tttcctctaataaatccttgcacattgaatactgtattggggtccgctcctcaggggaccctaactaacacaAGTAGTATGAAGGGTGATCCATGAAAACAGGCAAAAATGAGAATTTGAAAAAAGCTTGCCCACTGCCTGGCAGGCCAAGAGGATGCCACCAGGGTT-GT-GGGAGACACAGAAATTCCATAGCACAAGATGCAGCCGAGCTGCTATGGGTCTCACCAGTGCTGAGCTGAGAGGATGCCCTGGTTAGGGGAAGCTATGGCAGGTGGGGTGATAGAATGCCCTGCACAATAATGACGGGGTtagggggaaacctacaaagacagtggagttggctggttactgctcagctgcaatgatgccctgtgaaagtatcatgagaatctgcagattgttaacagctgtcactggctacatgtgacagcctctgcagtgtctcatgcacaggtctttatctcttgtagcgaaagggcagataccgtggaatggtagctgaagacatcactatgagggccacagtgctccagagaggtttgccactcagccaaggcaggcctgttacaggaaagtcaggaccctggtggggaaacctgagattctgcaaacaggaacagggttatccgatgggtgccctccaggatCCTCTGGGCATGCATAGGAGGCTCACCCTTCTCTAGTAATGGTTCCCACTTCCTATGCTGGAAGATGCTACAGAAGTCTCACCCCCATGATACAGCAGGAATCCCACTGaagagctttgcaggaactagctggcacgtccccataggaggccgaggagcacttctgggattggaatttgagggtgtttgatcaaggaaccagaatttcaagctggaagaataaaaatcctttggcttggaggcactttctcaaggcatgggtttatcaaacaccccaggactttgataaggggggggccaaacccaccgctggggtgaatccatatagactagaaaaaatgatgcctaactctcaacaaggtagacgtgacttagttgccctggaacttgcacaggatggaataacaaggctgagggaagtgggcatggtgaaggcccaccagtaccatgctccacaagacggtccaaaggaaacaccttccaccagagcctcagaaacgtgatggtgagagggacctgcatcatt
s panTro5.chr6             30127370 1932 + 175400573 tcaccctctccctgcatggctcaccctcaggctcctcctggcctaggtgacccttacacaccttctctctgtgctcacacgtccaaccctccttccccattcttatctcagctgacaaccttggttcctacctcactgagaaaactgaacacattagaag--------acagattccatcaccatctgctcatgcatttgcagctgcaacacatgtcaggtgttttaccatgtcggggactgttgtgggtaaaccattctgctcccagccagagccaatccctcttctggtgccccaaacgtcatcccttatcatctacttaaaggtgtcagctcatcaattaatac-c---attttttctctttatcatcaatctttttcctctctccccactggatcattgtggcagtcatgagaatgcacatcccagcccctcagctagagtaagcagaattgatagtggcctcaacttttgaatcctgaaacctattgccacgtttgctctgagaccacacctgccccctgtcttttcctgccaatgactgaggaaagcagggcagaaactaaggcaggaacatttcttctctgaaggctgactgaagctctagggcttcctgccacccttactgaacttctgttagcctgcacagggtctaggatgcttccagctgaccttcctgcactgtttacctcactggggctc-agagttgctttgtggtctgatgacattcccagcattttccgtctgtgtcctgaatttctctcataacta-tttcctctaataaatccttgcacattgaatactgtattggggtctgctcctcagaggaccctaactaacacaAGTAGTATGAAgggtgatccatgaaaacaggcaaaaatgagaatttgaaaaaagcttgcccactgcctggcaggccaagaggatgccaccagggtt-gt-gggagacacagaaattccatagcacaagatgcagctgagctgctatgggtctcaccagtgctgagctgagaggatgccctggttaggggaagctatggcaggtggggtgatagaatgccctgcacaataatgacggggttagggggaaacctacaaagacagtggagttggctggttactgctcagctgcaatgatgccctatgaaagtatcatgagaatctgcagattgttaacagctgtcactggctatatgtgacagcctctgcagtgtctcatgcagaggtctttatctcttgtagcgaaagggcagataccgtggaatggtagctgaagacatcattatgagggccacagtgctccagagaggtttgacactcagccaaggcaggcctgttagaggaaagtcaggaccctggtgggtgaacctgagattctgcaaacaggaacagggttatccgatgggtgccctccaggatCCTCTGGGCATGCATAGGAGGCTCACCCTTCTCTAGTAATGGTTCCCACTTCCTATGCTGGAAGATGCTACAGAAGTCTCACCCCCATGATACAGCAGGAATCCCACTGaagagctttgcaggaactagctggcacgtccccataggaggccgaggagcacttctgggattggaatttgagggtgtttgatcaaggaaccagaatttcaagctggaagaataaaaatcctttggcttggaggcactttctcaaggcatgggtttatcaaacaccccaggactttgataa-gggggggccaaacccactgctggggtgaatccatatagactagaaaaaatgatgcccaactctcaacaaggtagacatgacttagttgccctggaacttgcacaggatggaataacaaggctgagggaagtgggcatggtgaaggcccaccagtaccatgctccacaagagggtccaaaggaaacaccttccaccagagcctcagaaacgtgatggtgagagggacctgcatcact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30358040 1931 + 173848474 tcaccctctccctgcatggctcaccctcaggctcctcctggcctaggtgacccttacacaccttctctctgtgctcacacgtccaaccctccttccccattcttatctcagctgacaaccttggttcctacctcactgagaaaactgaacacattagaag--------acagattccatcaccatctgctcatgcatttgcagctgcaacacatgtcaggtgttttaccatgtcggggactgttgtgggtaaaccattctgctcccagccagagccaatccctcttctggtgccccaaacgtcatcccttatcatctacttaaaggtgtcagttcatcaattaatac-c---tttttttctctttatcatcaacctttttcctctctccccactggatcattgtggcagtcatgagaatgcacatcccagcccctcagctagagtaagcagaattgatagtggcctcaacttttgaatcctgaaacctattgccacgtttgctctgagaccacacctgccccctgtcttttcctgccaatgactgaggaaagcagggcagaaactaaggcaggaacatttcttctctgaaggctgactgaagctctagggcttcctgccacccttactgaacttctgttagcctgcacagggtctaggatgcttccagctgaccttcctgcactgtttacctcactggggctc-agagttgctttgtggtctgatgacattcccagcattttccgtctgtgtcctgaatttctctcataacta-tttcctctaataaatccttgcacattgaatactgtattggggtctgctcctcagaggaccctaactaacacaAGTAGTATGAAGGGTGATCCATGAAAACAGGCAAAAATGAGAATTTGAAAAAAGCTTGCCCACTGCCTGGCAGGCCAAGAGGATGTCACCAGGGTT-GT-GGGAGACACAGAAATTCCATAGCACAAGATGCAGCTGAGCTGCTATGGGTCTCACCAGTGCTGAGCTGAGAGGATGCCCTGGTTAGGGGAAGCTATGGCAGGTGGGGTGATAGAATGCCCTGCACAATAATGATGGGGTtagggggaaacctacaaagacagtggagttggctggttactgctcagctgcaatgatgccctatgaaagtatcatgagaatctgcagattgttaacagctgtcactggctatatgtgacagcctctgcagtgtctcatgcagaggtctttatctcttgtagcgaaagggcagataccgtggaatggtagctgaagacatcattatgagggccacagtgctccagagaggtttgacactcagccaaggcaggcctgttagaggaaagtcaggaccctggtgggtgaacctgagattctgcaaacaggaacagggttatccgatgggtgccctccaggatCCTCTGGGCATGCATAGGAGGCTCACCCTTCTCTAGTAATGGTTCCCACTTCCTATGCTGGAAGATGCTACAGAAGTCTCACCCCCATGATACAGCAGGAATCCCACTGaagagctttgcaggaactagctggcacgtccccataggaggccgaggagcacttctgggattggaatttgagggtgtttgatcaaggaaccagaatttcaagctggaagaataaaaatcctttggcttggaggcactttctcaaggcatgggtttatcaaacaccccaggactttgataa--ggggggccaaacccactgctggggtgaatccatatagactagaaaaaatgatgcccaactctcaacaaggtagacatgacttagttgccctggaacttgcacaggatggaataacaaggctgagggaagtgggcatggtgaaggcccaccagtaccatgctccacaagagggtccaaaggaaacaccttccaccagagcctcagaaacatgatggtgagagggacctgcatcact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      14046 1931 +   2037526 tcaccctctccctgcatggctcaccctcagcctcctcctggcctaggtgacctttacacaccttctctctgtgctcacacatccaaccctccttccccattcttatctcagctgacaaccttggttcctacctcactgagaaaactgaacacattagaag--------acagattccatcaccatctgctcatgcatttgcagctgcaacacatgtcaggtgttttaccatgtcggggactgttgtgggtaaaccattctgctcccagccagagccagtccctcttctggtgcccaaaacgtcat-ccttatcatctacttaaaggtgtcagttcatcaattaatac-c---tttttttctctttatcatcaacctttttcctctctccccactggatcattgtggcagtcatgagaatgcacatcccagcccctcagctagagtaagcagaattgatagtggcctcaacttttgaatcctgaaacctattgccacatttgctctgagaccacacctgccccctgtcttttcctgccgatgactaaggaaagcagggcagaaactaaggcaggaacatttcttctctgaaggctgactaaagctctagggcttcctgccacccttactgaacttctgttagcctgcacagggtctaggatgcttccagctgaccttcctgcactgtttacctcactggggttc-agagttgctttgtggtctgatgacattcccagcattttccgtctgtgtcctgaatttctctcataacta-tttcctctaataaatccttgcacattgaatactgtattggggtctgctcctcagaggaccctaactaacacaAGTAGTATGAAGCgtgatccatgaaaacaggcaaaaatgagaatttgaaaaaagcttgcccactgcctggcaggccaagaggatgccaccagggtt-gt-gggagacacagaaattccatagcacaagatgcagctgagctgctatgggtctcaccagtgctgagctgagaggatgccctggttaggggaagctatggcaggtggggtgatagaatgccctgcacaataatgacggggttagggggaaacctacaaagacagtggagttggctggttactgctcagctgcaatgatgccctatgaaagtatcatgagaatctgcagattgttaacagctgtcactggctacaggtgacagcctctgcagtgtctcatgcagaggtctttatctcttgtagcgaaagggcagataccgtggaatggtagctgaagacatcattatgagggccacagtgctccagagatgtttgacactcagccaaggcaggcctgttagaggaaagtcaggaccctggtgggtaaacctgaaattctgcaaacaggaacagggttatccgatgggtgccctccaggatCCTCTGGGCATGCATAGGAGGCTCACCCTTCTCTAGTAATGGTTCCCACTTCCTATGCTGGAAGATGCTACAGAAGTCTCACCCCCATGATACAGCAGGAATCCCACTGaagagctttgcaggaactagctggcacgtccccataggaggccgaggagcacttctgggattggaatttgagggtgtttgatcaaggaaccagaatttcaagctggaagaataaaaatcctttggcttggaggcactttctcaaggcatgggtttatcaaacaccccaggactttgataa-gggggggccaaacccactgctggggtgaatccatatagactagaaaaaatgatgcccaactctcaacaaggtagacatgatttagttgccctggaacttgcacaggatggaataacaaggctgagggaagtgggcatggtgaaggtccaccagtaccatgctccacaagagggtccaaaggaaacaccttccaccagagcctcagaaacgtgatggtgagagggacctgcatcact
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74825960 1936 + 122973662 tcaccctctccaggcatggttcagcctcagcctcctctt----caggagactcttacacagcttctctttgtgatcacacatccaaaccttattcctcattcttacttcagccgatgaccttgcttcctacttcactgagaaaactgaacacattagaagacaacttcacagattccaccaccatctgctcatgcatttgcaactgcactgcatgtcagacgttttaccacatgagggactgttgtgggttaatcattctgctcccagccagagccagtccttcttctggtgccccaaatgtcaacccttatcatctagttaaaggtgtcagttcatcaattagtgtac---cttttttctttttatcatcaacctttttcctctctccccactggatcattgtggcagtcatgagaatgcacatcccagcccctcagctagaggaagcagaactgatgatggccccagctcttgaagcctgaaatctattgccacatttgctctgagaccatacctgcccctgatcttttccagccaatg-ttgaggaaagcagggcagaaactaaggcaggaacatttcttctctgaaggctgactgaagtgccaggactccctgtctcccttactgaacttcccttagcctgcacagggtctaagatgcttccagctgaccttcctgcactctctccttcactagggctc-agagttgcagtgtggtctgatggctttcccagtgttttctgtctctctcctgaatttctctcacaagta-tttcccctaataaatccttgcacgcttaatactgtattggggtctgctcctcaggggaccataactaacacaAGTGGTATGAAGGGTGACCCATGAAAACAGGCAAAAATGGGAATTTGAAATAATCTTGCCCACTGCCTGGCAGGCCAAGCGGATGCCACCCGGGTTGGT-GGGGGACACAGAAAGTCCATGGAacaaggtgcagctgagctgctgtgggtctcaccagtgctgagatgagaagatgccctgcttaggggatgctatggcaggtgcagtgatagaatgccctccacaataatgacgggattggagggaaacttacaaagacagtggagttggctggttactgctcggctgtgttgatgccctataaaacgatcatgagaatctgcggattgttaacagttgtcactggctatatgtgacagcctctgcattgtctcatggagaggactttatctccagcagcgaaagggcagatagcatggaatggtagctgaagacatcactacgagggccacagtgctccagagatgtctgacactcagccaaagcaggcctgttacgggaacgtcagggtcctggtggggaaacctgagattctggaaactggaacagggttatccgatgggtgcccTCCAGGACCCTCTGGGAATGCAGAGGAGGCTCGCCATTTCCTAGTAATGGTTCCTACTTCCTATGCTGGAATATGCTGCAAAAGCCTCACCCCTATGATTCTGCGGGAATCCCACTCaggaggttagcaggaattagctgccatttccccataggagcccgaggagcacttctgggattgcaatttgagggtgtttgatcaagaaaccagtattttaggctggatgaataaaaaccctttggcttggaggcactttctcaaggcatgggtttatcaaatatcccaggactttgataa--gtgggggtaaacccactgctggggtgaatccatatagactagaaaaaatgatgcccaactctcaacaaggtagacatgtcttagtttccctggaacatgtagaggatggaataaggaggctgagggaagtgggcgtgGTGAAGGCCCACCAGGACCATGCTCCACAAGAGGGCCCAGAAGGCACACCTTCCACCAGAGCCTCAGGAACTTGATGGTGAGAGGGACCTGCATCACT
i nomLeu3.chr1a            C 0 N 0
s rheMac8.chr4             30472488 1905 + 172585720 tcaccctctccctgcatggctcaccctcagccccctctgggtctgggtgactcttacacaccttctctctgtgctcacacatccaaccctccttccccattcttacttcagctgatgaccttgcttcctacttcactgacaaaactgaacatattagaagacagcttcacagattccaccactgtctgttcatgcatttgcagctgcatcgcatgtcaggaatttttccacatgggagattgctgggtattaaccatcctgctcccagacagagccagttcctctgctggcgccctgaacatcatcccttctcatctacttaaaggtgttagttcatcaattaatac-c----ttttttccctctatcctcatcccttttcctcttactccagtgcatcattgtggcagtcatgaggatgcacatcccaggccctcaggtagacgaagaataattgatgat-gcctctgctgtcacagcctgaaatctattgtcacttttgctccgagaccacacctgactca-gctttttcc------tggttgaggaaagcagg---gaaactgaggcaggaatatttctattctgaaggctgactgaggctccagggctccctgctacttttaccgaacttaccttagcccgcacagggtctagaaggcttccagctgaccttcctgccctctctccttcactggggctc-agagttgcagtgtggtctgatggctttcccagtgttttcggtctctctcctgaatttctctcacaagta-tttcctttaataagtccttgcacgtttaatactgtattggagtctgctcctcaggagaccataactaacac-aGTGGTATCAAGGGTGAT-------AATGGgcaaaaataggaaattgaaataagctttcccactgcctggtagaccaagaggatgccatctgggttagtcgggggacacag----tctgtagcacaaggtgcagctgaggtgctgtgggtctcaccagtgctaacctgagaagacgtcctgattaaaagcagctatggcaggtgggatgatacaataccctgcacaataatgatggaattggggg-gaacccacaaagacagtgga-ttggctggttacttcccagctgtgttcatgctctataaaatgataatgagaatctgtagattgttcacagatgtcactggctacgtgtcagagcctctgcagtgtctcatggagaagcctttatctcctgtagcaaaaggatagataccacggaatagtagctgaagacatcattatgagggccacagtgctccagagatgtttgacacccagccaatgcaggcccgttataagaaagtcagggccatggtggggaaacctgagattctgcaaactggaacaagatcatccgatgggtgccGCCC-GGATCCTCTGGGCATGCAGAGGAGGCTCACCCGTCTCTAGCAATGGTTCCCACTTCCTATGCTGGAAGATGCTGCAGAAGCCTCATCCCTATGACACATTGGGAATCCCACTCaggagctttgcaggaaccagctggcgggtcccaataggagcacggggagcacttctgggactgaaatttgagggtgtgtgatgaaggggtcagaatgtcaggctggattaatgtaaatccattggcttggaggcactatctcagggcatgggtttatcagacaccccagaactttgataa--gtgggggtaaacccactgctggggtgaat---------ctagataaactgattcccagatctcaacaaggtagacatgtcttagttgccctagaacatgcagaggatggaataacgaggctgagtgaattgggcatggtgaaggcccactaagaccatgctccacaagaggatccagacgccacaccttccaccagagcctcaggaacgtgatggcgagagggagctgcatcact
i rheMac8.chr4             N 0 C 0
s cerAty1.NW_012002535v1     174517 1938 -    863181 tcagcctctcccttcatgactcaccctcagccccctccgggcctgggtgactcttacacaccttctctctgtgctcacacctccaaccctccttccctattcttacctcaactgattaccttggttcctacctcactgagaaaactgaacacattagaagacaacttcccagatcccaccactgtctgctcatgcatttgccgctgcatcacatgtcaggcgttttaccacgtgcgggactcttatgggttaaccattctgctcccagccagagccagtgcctcttctggtgccccaaaagtcatcccttatcatctacttaaaggtgtcagttcatcaactaatac-c-tttttttttctctttatcatcacccttttccctctctccccactggatcattgtggcagtcatgagaatgcacatcccagcccctcagctagagaaagcagaattgatgatggccccaacttttgaatcctgaaacctattgccacatttgctctgagaccacacctgccccctgtcttttccagccaatgactgaggaaggcagggtagaaactaaagcagg-acatttctcttctgaaagctgactgaggctccagggctccctgccacccttacagaacttcccttagcctgcacagggtctagggtgcttccagctgaccttcctgaactctctacatcactggggctcaagagttgctttgtggtctgatggctttcccagcattttctgtttgtgtcctgaatttctctcacaagta-tttcctctaataaatccttgcacgtttaatactgtattggggtctgctcctcagaggaccctaactaatacaAGTAGTATGAAGGGTGATCCATGGAAACAGGCAAAAATGAGAATTTGAAGTAAGCTTGCTCACTGCCTGGCAGGCCAAGTGGATGCCACCTGGGTTGGT-GGGGGACACAGAAATTCCATAGCACAAGATACAGCTGAGCTGTCTTGGGtctcaccagtgctgagctgagaagatgccctggttaggggatggtatggcaggtgcagtgata----gccctacacaataatgatggagttgggggaaaacctacacagacagtggagttgactggttactgctcggctgcgttgatgccctataaaaggatcatgagaatctgcggattattaatagcggtcactggctacaggtgacagcctctgcagtgtctcatggagaggtctttatctcctgtagtgaaagggcacatactgtggaatggcaactgaagacatcattatgagggccacagtgctccagagatgtttgacactcagcaaaggcaggcctgttacatgaaaatcagggctctggtgggtaaacctgagaTTCTGCAAACTGGAACAGGGTTATCCAATGAGTGCCCTCCAGGATCCTCTGAGCATGCAGAGGAGGTTCGTCCTTCTCTAGTAATGGTTCCCAGTTCCTATGCTGGAAGATGCTACAGAAGCCTCACCCCTATGATGCAGCAGGAATCCCATTCaggagctttgcaggaaccagccagcatgtccccataggagcccaaggagcatttctgggattggaatttgagggcatttgttcaaggaaccagaatttcaggctggaagaacaaaaatcctttggcttggaggcactttctcaaggcatgggtttatcaaacacctcaggactttgataa--gtgggggtaaacccactgatggggtgaatccctatagactagaaaaaatgatgcccaactctcaacaaggtagacgtgtcttagttgccctggaacttgcacaggatggaataacaaggctaagggaaatggacgtggtgaaggcccaccagtaccatgctccacaagagggcccaaaggaaataccttcccccacagcctcaggaaggtgatggtgagagggacctgcatcact
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     174083 1937 +    273075 tcagcctctcccttcatgactcaccctcagccccctccgggcctgggtgactcttacacaccttctctctgtgctcacacctccaaccctccttccctattcttacctcaactgattaccttggttcctacctcactgagaaaactgaacacattagaagacaacttcccagatcccaccactgtctgctcatgcatttgccgctgcatcacatgtcaggcgttttaccacgtgcgggactcttatgggttaaccattctgctcccagccagagccagtgcctcttctggtgccccaaaagtcatcccttatcatctacttaaaggtgtcagttcatcaactaatac-c--ttttttttctctttatcatcacccttttccctctctccccactggatcattgtggcagtcatgagaatgcacatcccagcccctcagctagagaaagcagaattgatgatggccccaacttttgaatcctgtaacctatcatcacatttgctctgagaccacacctgccccctgtcttttccagccaatgactgaggaaggcagggtagaaactaaagcagg-acatttctcttctgaaagctgactgaggctccagggctccctgccacccttacagaacttcccttagcctgcacagggtctagggtgcttccagctgaccttcctgaactctctacatcactggggctcaagagttgctttgtggtctgatggctttcccagcattttctgtttgtgtcctgaatttctctcacaagta-tttcctctaataaatccttgcacgtttaatactgtattggggtctgctcctcagaggaccctaactaatacaAGTAGTATGAAGGGTGATCCATGAAAACAGGCAAAAATGAGAATTTGAAGTAAGCTTGCTCACTGCCTGGCAGGCCAAGTGGATGCCACCCGGGTTGGT-GGGGGACACAGAAATTCCATAGCACAAGATACAGCTGAGCTGTCTTGGGtctcaccagtgctgagctgagaagatgccctggttaagggatggtatggcaggtgcagtgata----gccctacacaataatgatggagttgggggaaaacctacacagacagtggagttgactggttactgctcagctgcgttgatgccctataaaaggatcatgagaatctgcggattattaatagcggtcactggctacaggtgacagcctctgcagtgtctcatggagaggtctttatctcctgtagtgaaagggcacatactgtggaatggcaactgaagacatcattatgagggccacagtgctccagagatgtttgacactcagcaaaggcaggcctgttacatgaaaatcagggctctggtgggtaaacctgagaTTCTGCAAACTGGAACAGGGTTATCCAATGAGTGCCCTCCAGGATCCTCTGAGCATGCAGAGGAGGTTCGTCCTTCTCTAGTAATGGTTCCCAGTTCCTATGCTGGAAGATGCTACAGAAGCCTCACCCCTATGATGCAGCAGGAATCCCATTCaggagctttgcaggaaccagccagcatgtccccataggagcccaaggagcatttctgggattggaatttgagggcatttgttcaaggaaccagaatttcaggctggaagaacaaaaatcctttggcttggaggcactttctcaaggcatgggtttatcaaacacctcaggactttgataa--gtgggggtaaacccactgatggggtgaatccctatagactagaaaaaatgatgcccaactctcaacaaggtagacgtgtcttagttgccctggaacttgcacaggatggaataacaaggctaagggaaatggacgtggtgaaggcccaccagtaccatgctccacaagagggcccaaaggaaataccttcccccacagcctcaggaaggtgatggtgagagggacctgcatcact
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     456018 1927 -   1771730 tcaccctgtcccttcatggctcaccctcagccccctcctgtcctgggtgactcttacacaccttctctttgtgctcacacatccaacctttcctctccgttcttaactcagatgaggacattgcttcctacttcactaacataactgaacccaggagaaaacagcttcacagattccaccactgtctgatcatgcatttgcagctgcactgcatgtcaggcactttattatgtgggagactgttgtgggtgaaccattctgtcctcagcctgagccagtccctcttctggtgccccaaatgtcatctcttctcatctacttaaaggtatcagttcaacaattaatac-cattttttcctctctttctcatcaccctttttcctctctccccactggatcatCgtggcagtcatgagaatgcacatcccagcccctcagctagaggaagcataactggtgacggccccagctcttgaagcctgaaatctattgccacatttgctctgagaccgcacctgcccctggtcttttccagccaatgattgaggaaagcagggcagaaactaaggcaggaacacttctcctctcagggctgactgaagctccagggctccct-ccacccttactgaacttcccgtagccagcacagggtctagggtgcttccagctgaccttcctgccctctctccttcactggggctc-agagtggcgttgtgg-----------tccctgcattttctgtctctttcctgaatttctcttacatgtattttcccctagtaaatccttgcaagtttaatactgtattggggtctattcctcaggggaccccaactaacacaAGtggtatgaagggtgatccatgaaaacagacaaaaatgggaattagaaataagctcgcccactgccaggcaggccaagaggatgccacccaggttggt-gggggacatagaaagttcatggcacaaggtGCGGCTGAGCTGCAGTGGGCCTCCCCAATACTGAGCTGAGAAGATGCCCTGGTTAGGGGAAGCTACGGCAGGTGCAGTGATAGAAT-TCCTGCACAATAAtgaaggggttgggga-aaacctacaaaaacagtagagatggctggttactgctcggctgtgctgatgtcctataaaaggatcatgagaacccacggattcttaacagccatcatgggttacatgtgacagcctctgcagtgtctcatggagaggcctttttctcctgcactgaaagggcagatagcatggaattatagttgaagacatcattttgaggaccacagtgctccagagatgtttgacactcagccaagtcaggcctgttacaggaaagtcaggaccctggtagggaaacctgagaTTCCACAAACTGGAACAGGGTTTTCCGATAGGTGCCCTCCAGGATGCTCTGGGCATGCAGAGGAGGCTAGCGCTTCTCTAGTCATGGTTCCCAC-TCCTGTGCTGGAAGACGCTGCAGAAGCCTCACCCCTAGGATGCAGCGGGAATCCCACTCaggagctttgtaggaactc-ccggcacttccctgtaggagcccgaggagcatttctgggattgaaatttgagcatatttgtttaaggaaccataatttcaggctggatgaacaagaatcctttggattagaggtgctttcacagagtgtgggtttatccagcaccccaggactttgataa--atgggggtaaatctactgtccaggtgaatccatacagacta-aaaaaataatgctcaactctcaagaaggtagacaaatcttagttgccctttaccatatagaagatggaataaagaggctgagggaactgggtgtggtgaaagtgcaccaggaccatactctacaggagggcacagagggcacaccttttgccagagcctcaggaacatgctggtgagagggacctgcatcact
i cebCap1.NW_016107755v1   C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T

a score=1424500.000000
s hg38.chr6_GL000254v2_alt  1171120 649 +   4827813 aagaaatgtcggggtgttgtcctctgcaggctggatgtgatggtagtaaagatga-cccagagttgcatttattaatatccctggggagagtgtggccctgaagagacaaagaccaaatggtggcagtgacctgaaaaagccagagggcagagttactatggcaaactaaaaggagtagccaataggactcaagctgcagggaatgtggggaaggatagtagagggtggtgtcccaggattaggacaggaagccaacaagggcgctgcttgatatctatgataagaaagcaagaattgagaagcaggagggtgaaggtgtttgacccaatacaaagtcatgatcccatcctcaatgcctagacctcagccaaagttcagattcagatctcagtgacaga---ggaggagtccatatccctaggaggaataccctgcaactccgtggaagtaaatgctggcacaattccctcagt-ccttcagcaaaggaacctatagccatttactcaggagattgtacactggcg-aaaggaaagatgcagaactggtcag-attattgacactgagtgagagctgacattgatgcccagatgcccacagcactatcatgtctcccatcacagtggggcttacggaggtcagggagtaaacctgg
s panTro5.chr6             30129302 648 + 175400573 aagaagtgtcggggtgttgtcctctgcaggctggatgtgatggtagtaaagatga-cccagagttgcatttattaatatccctggggagagtgtggccctgaagagacaaagaccaaatggtggcagtgacctgaaaaagccagagggcacagttactatggcaaactaaaaggagtagccaataggactcaagctgcagggaatgtggggaaggatagtagagggtggtgtcccaggattaggacaggcagccaacaagggcgctgcttgatatc-atgataagaaagcaagaattgagaagcaggagagtgaaggtgtttgacccaatacaaagtcatgatcccatcctcaatgcctagacctcagccaaagttcagattcagatcccagtgacaga---ggaggagtccatatccctaggaggaataccctgcaaccccgtggaagtaaatgctggcacaattccctcagt-ccttcagcaaaggaacctatagccatttgctcaggagattgtacactgggg-aaaggaaagatgcagaactggtcag-attattgacactgagtgagagctgacattgatgcccagatgcccacagcactatcatgtctcccatcacagtggggcttacggaggtcagggagtaaacctgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30359971 648 + 173848474 aagaagtgtcggggtgttgtcctctgcaggctggatgtgatggtagtaaagatga-cccagagttgcatttattaatatccctggggagagtgtggccctgaagagacaaagaccaaatggtggcagtgacctgaaaaagccagagggcacagttactgtggcaaactaaaaggagtagccaataggactcaagctgcagggaatgtggggaaggatagtagagggtggtgtcccaggattaggacaggcagccaacaagggcgctgcttgatatc-atgataagaaagcaagaattgagaagcaggagagtgaaggtgtttgacccaatacaaagtcatgatcccatcctcaatgcctagacctcagccaaagttcagattcagatcccagtgacaga---ggaggagtccatatccctaggaggaataccctgcaaccccgtggaagtaaatgctggcacaattccctcagt-ccttcagcaaaggaacctatagccatttgctcaggagattgtacactgggg-aaaggaaagatgcagaactggtcag-attattgacactgagtgagagctgacattgatgcccagatgcccacagcactatcatgtctcccatcacagtggggcttacggaggtcagggagtaaacctgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      15977 649 +   2037526 aagaagtgtcggggtgttgtcctctgcaggctggatgtgatggtagtaaagatga-cccagagttgcatttattaatatccctggggagagtgtggccctgaagagacaaagaccaaatggtggcagtgacctgaaaaagccagagggcacagttactatggcaaactaaaaggagtagccaataggactcgagctgcagggaatgtggggaaggatagtagagggtggtgtcccaggattaggacaggcagccaacaagggcgctgcttggtatctatgataagaaagcaagaaatgagaagcaggagggtgaaggtgtttgacccaatacaaagtcatgatcccatcctcaatgcctagacctcagccaaagttcagattcagatcccagtgacaga---ggaggagtccatatccctaggaggaataccctgcaaccccgtggaagtaaatgctggcacaattccctcagt-ccttcagcaaaggaacctatagccatttactcaggagattgtacactgggg-aaaggaaagatgcagaactggtcag-attattgacactgagtgagagctgacattgatgcccagatgcccacagcactatcatgtctcccatcacagtggggcttatggaggtcagggagtaaacctgg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30474393 649 + 172585720 aagaagtgttggggtgttgtcctctgcagactgggggtgatggtagtaaagacagtcccagagttgcatttattaatatccctggggagggtgtggccctgaagagacaaagaccaagtggtggcagtgatctgcaaaagccagacagcaccattactatgtcagcctcagaggggcagccaagaggactcaagctgcagggaatgtggggaaggttaatagagtttggtgtcccagggttaggacaggcaactaacaagggcactggttgatatttatgataataaagcaagaattgagaagcaggagggtaaaggtttttgaaccaatac--agtcatgatcccatcctcaatgcctagacctcagccaagattcagattcagatcccggtgacaga---cgtggagtccatatccctaagaggaataccctgtaacctcgtgaaagtatatgccgggacaatcccctcagtcccttcggcaaaggaacctatagtcatttactcaggagactgtaccctggggaaaaggaaacaggcagaactgggggg-attactgacactggctgtgag-ggacactgatgcccagatgcccacagcaccatcatgtctcctatcacagtggggcttacggaggtcaaggagtaaacctgg
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     176455 648 -    863181 gagacgtgttagggtgttgtcctctgcaggctgggggtgatgatactaaagaaggtcccagagctgcatttattcatatccctggggaaagtgtggccctgaagagacaaagaccaagtggtggcagtgacctgacaaagccagagggcacggttactatggcaacgtcaaaagagcagccaagatgcctcaagctgcagggaatgtggggaaggttaatagagggtggtgtcctagggttaggacaggcagccagcagggttgctacttgatgtctatgataagaaagcaagaattgagaagcaggagagcaaaggtgtttgacccaatacaaagtcatgatctcatcctcaatgcctacacctcaaccaaggttcagattcagatctcagtgacaga------ggagtccatatccctaagaggaagacactgcaaccccgtggaagtatatgctggcataattccctcagt-ccttcggcaaaggaacctatagacatttacccaggaaactgtacattgggg-aaaggaaacaggcagaactggggggaattattgacactgggtgtgagctgacattgctgaccagatgcccacagcaccatcatgtctcccatcacagtggtgcttacggaagtcagggagtaaacctgg
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012101121v1     176020 648 +    273075 gagacgtgttagggtgttgtcctctgcaggctgggggtgatgatactaaagaaggtcccagagctgcatttattcatatccctggggaaagtgtggccctgaagagacaaagaccaagtggtggcagtgacctgacaaagccagagggcacggttactatggcaacgtcaaaagagcagccaagatgcctcaagctgcagggaatgtggggaaggttaatagagggtggtgtcctagggttaggacaggcagccagcagggttgctacttgatgtctatgataagaaagcaagaattgagaagcaggagagcaaaggtgtttgacccaatacaaagtcatgatctcatcctcaatgcctacacctcaaccaaggttcagattcagatctcagtgacaga------ggagtccatatccctaagaggaagacactgcaaccccgtggaagtatatgctggcataattccctcagt-ccttcggcaaaggaacctatagacatttacccaggaaactgtacattgggg-aaaggaaacaggcagaactggggggaattattgacactgggtgtgagctgacattgctgaccagatgcccacagcaccatcatgtctcccatcacagtggtgcttacggaagtcagggagtaaacctgg
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     457945 650 -   1771730 aacaagtgtcagggtgttgtcctctgcaggttgggggtgacggtagtaaagatggtcccagggttgcatttatttatatccct-gggagagtgtggccctgaagagacaaagaccaagtagtgtcagtgacctgcaaaagccagagggcaccgttactatggcaacctcagaggagcaatgaagaggactcaagttgtagggaatgtgtggaaggttaatagagggtggcgtcccagggttaggacaggcagccagcaagggcactgcttgatatctatgataggaaagcaagaattgagggtcaggagggtgaaggtgtttgatgcaatacaaatttctgatcccatcatcagtgtctagacctcagccacgattcagattcagatctcagtgacagaggaggaggagtccatatccc-aggaggaacaccctgcaaccctgtggaggtgtatgctgggacaattccctcagg-ccttcagcaaaaaaacctatagccctttactcaggagactgtacacttggg-aaaggaaacacgcagaactaggggg-attactgacactgggtgtgagctgacactgatgccctgatgcccacagcactaccatg-cccccatcacagtggggcttatgaaggtcagggagtaaacctgg
i cebCap1.NW_016107755v1   C 0 C 0
e colAng1.NW_012115577v1      53175 22804 -   1829203 T

a score=1039125.000000
s hg38.chr6_GL000254v2_alt  1171769 398 +   4827813 acacattacggcccacaatggaactactggatccatagacccagccctggttatcttccaattccctgagtgcataattaacactgatgcactgttaagtggagtcacccccacactgggtccctagtctgtggagtcaggactctcattgtgctgaaagccaaagggaaacctctgacgctgcccacatcctggc---------aaaaaaaaaaaaaaaaaaaatcatagtgtgtcccagggtgtg---tcttgaggaagacactgaaagtaatg--tgggggtcacaccaccattagagagctgaaggatgtgggatggtgtT-GGGGTTGTCTATTGTCTCTACATAATCCAGCAACCTGTCCCTGAGGAAGCCTGATGAGGACTAAAGAATGAATGAGATTACTCCAGG
s panTro5.chr6             30129950 398 + 175400573 acacattacggcccacagtggaactactggattcatagacccagccctggttatcttccaattccctgagtgcataattgacactgatgcactgttaagtggagtcacccccacactgggtccctagtctgtggagtcaggactctcattgtgctgaaagccaaagggaaacctctgacgctgcccacatcctggc---------aaaaaaaaaaaaaaaaaaaatcatagtgtgtcccagggtgca---tcttgaggaagaaactgaaagtatcg--tgggggtcacaccaccattagagagctgaaggatgtgggatggtgtt-ggggttgtctattgtctctacgtaatccagcaacctgtccctgaggaagcctgatgaggactaaagaatgaatgagattactccagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30360619 393 + 173848474 acacattacggcccacagtggaactactggatccatagacccagccctggttatcttccaattccctgagtgcataattgacactgatgcactgttaagtggagtcacccccacactgggtccctagtctgtggagtcaggactctcattgtgctgaaagccaaagggaaacctctgacgctgcccacatcctggc--------------aaaaaaaaaaaaaaatcatagtgtgtcccagggtgcg---tcttgaggaagaaactgaaagtatcg--tgggggtcacaccaccattagagagctgaaggatgtgggatggtgtt-ggggttgtctattgtctctacgtaatccagcaacctgtccctgaggaagcctgatgaggactaaagaatgaatgagattactccagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      16626 407 +   2037526 acacattaaggcccacagtggaactactggatccatagacccagccctggttatcttccaattcccagagtgcataattgacactgatgcactgttaagtggagtcacccccacactgggtctctagtctgtggagtcaggactctcattgtgctgaaagccaaagggaaacctctgacgctgcccacatcctggcaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcatagtgtgtcccagggtgtg---tcttgaggaagacactgaaattattg--tggaggtcacaccaccattagagagctgaaggatgtgggatggtgtt-ggggttgtctattgtctctacgtaatccagcaacctgtccctgaggaagcctgatgaggactaaagaatgaattagattactccagg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30475042 387 + 172585720 acacattatggcccacaatgggaccactggattcacagacccagccctggttatcttccaattccctgagtgcataattgacactgatgcacttctaagtggagtcacccccacactgggtccctagtctgtggagtgacggctctcattgtgctgaaagacaaagggaaacctctgacactgcccccatcctggc------------------caaatcagaaatcatagtgtgtcccaggttggg---tcttgtgaaagacgctgaaagaactggaggggggttgcaccaacgttagagagctgaaggatgcagggtggtgtt-ggg----gctattgtctctacgtaatccagtaacctgtacctgaggaagcctgacgaggcctaaagaatgaactagattactccagg
i rheMac8.chr4             C 0 N 0
s cerAty1.NW_012002535v1     177103 385 -    863181 acacattatgggccacaatgggaatgctggattcatagacccagccctggttatcttccaattccctgagtgcataattgacactgatgcactgctaagtggagccacccccacactgggtcgctagtctgtggtgtaaggactctcattgtgctgaaagccaaagggaaacttctgacattg-ccccatcctggc------------------caaatcagaaatcatagtgtgtaccagagtggg---ttgtgaggaagacactgaaagtatt---tgggggttgcaccaccattagagagctgaagcatgtggggtggtgtt-gggct--tctattgtctctacgtaatccagcaacctgtccctgaggaagcctgataaggtctaaagaatgaatgagattactctagg
i cerAty1.NW_012002535v1   C 0 N 0
s manLeu1.NW_012101121v1     176668 385 +    273075 acacattatgggccacaatgggaatgctggattcatagacccagccctggttatcttccaattccctgagtgcataattgacactgatgcactgctaagtggagccacccccacactgggtcgctagtctgtggtgtaaggactctcattgtgctgaaagccaaagggaaacctctgacattg-cctcatcctggc------------------caaatcagaaatcatagtgtgtaccagggtggg---ttgtgaggaagacactgaaagtatt---tgggggttgcaccaccattagagagctgaagcatatggggtggtgtt-gggct--tctattgtctctacgtaatccagcaacctgtccctgaggaagcctgataaggtctaaagaatgaatgagattactctagg
i manLeu1.NW_012101121v1   C 0 N 0
s colAng1.NW_012115577v1      30371 389 -   1829203 acacattatggcccacaatgggaccattggatccatagaccaagtcctggttatcttccaattccctgagtgcataattgacactgatgcactgctaagtggagccacccccacaatgggtccctagtctgtggtgtaagggctgtcattgtgctgtaagacaaaggaaaacctctgacactgactccatcctggc------------------caaattagaaatcatagtgtgtcttggggtggg---tcttgaggaagacactgaaagtactgt-agggggtcgcaccaacattacagggctgaaggaggt-ggatgatgttcgagct-atctattgtctctacgtagtccagcaacctgtcccttaggaagcctgatgaggcctaaagaatgaatgagattactccagg
i colAng1.NW_012115577v1   T 22804 N 0
s cebCap1.NW_016107755v1     458595 389 -   1771730 acatgttatggctcacagtgcgaccactggatccgtatactaagccctggttatctcccaattccctgagtgcacaattgacatggataccctgctaagtggagtcactcccgcactgagtccctagtctgtggcataagggctctcattgtgctgaaagccaaagggaaacctctgactctgcccccatgctggg------------------cagatcaaaaatcatagtgtgttccagtgtgggtcttcttgcagaagacagtgaaagtattg--tgggggtcacaccaccattagggacctaaaggatgcagggtggtgct-gaggccgtctgttg---ctatgtaatccacccacctgtccctgaggaagcctgacgagtcctaaagaatgaatgagattactccagg
i cebCap1.NW_016107755v1   C 0 N 0

a score=3726.000000
s hg38.chr6_GL000254v2_alt  1172167 7 +   4827813 CCTGGCC
s panTro5.chr6             30130348 7 + 175400573 tctggcc
i panTro5.chr6             C 0 N 0
s panPan2.chr6             30361012 7 + 173848474 tctggcc
i panPan2.chr6             C 0 N 0
s gorGor5.CYUI01015528v1      17033 7 +   2037526 tctggcc
i gorGor5.CYUI01015528v1   C 0 N 0

a score=2400.000000
s hg38.chr6_GL000254v2_alt  1286635 4 +   4827813 GGCC
s panTro5.chr6             30157516 4 + 175400573 GGCC
i panTro5.chr6             N 0 C 0
s panPan2.chr6             30388143 4 + 173848474 GGCC
i panPan2.chr6             N 0 C 0
s gorGor5.CYUI01015528v1      42250 4 +   2037526 GGCC
i gorGor5.CYUI01015528v1   N 0 C 0

a score=12606.000000
s hg38.chr6_GL000254v2_alt  1286639 2 +   4827813 GT
s panTro5.chr6             30157520 2 + 175400573 GT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30388147 2 + 173848474 GT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      42254 2 +   2037526 GT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74722885 2 + 122973662 GT
i nomLeu3.chr1a            N 0 C 0
s rheMac8.chr4             30545036 2 + 172585720 GT
i rheMac8.chr4             N 0 C 0
s cerAty1.NW_012002535v1     190572 2 -    863181 GT
i cerAty1.NW_012002535v1   N 0 C 0
s chlSab2.chr17            29363121 2 -  71996105 GT
i chlSab2.chr17            N 0 C 0
s manLeu1.NW_012101121v1     190100 2 +    273075 GT
i manLeu1.NW_012101121v1   N 0 C 0
s colAng1.NW_012115577v1      42262 2 -   1829203 GT
i colAng1.NW_012115577v1   N 0 C 0
s cebCap1.NW_016107755v1     522188 2 -   1771730 GT
i cebCap1.NW_016107755v1   N 0 C 0
s aotNan1.NW_018496904v1      12785 2 -    383796 GT
i aotNan1.NW_018496904v1   N 0 C 0

a score=24168.000000
s hg38.chr6_GL000254v2_alt  1286641 4 +   4827813 CATG
s panTro5.chr6             30157522 4 + 175400573 CATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30388149 4 + 173848474 CATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      42256 4 +   2037526 CATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74722887 4 + 122973662 CATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30545038 4 + 172585720 CATG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     190574 4 -    863181 CATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29363123 4 -  71996105 CGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     190102 4 +    273075 CATG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      42264 4 -   1829203 CATG
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     522190 4 -   1771730 CATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      12787 4 -    383796 CATG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17266483 4 -  18854210 CACC
i otoGar3.GL873550         N 0 C 0

a score=869303.000000
s hg38.chr6_GL000254v2_alt  1286645 148 +   4827813 GCGCCCCGAACCCTCGT---CCTGCTACTCTCGGGGGCTCTGGCCCTGACCCAGACCTGGGCGGGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCTGTGGGGAGAAGCAACGGGCCCGCCTGGCGGGGGCGCAGGACCCGGGAAGCCGCGC
s panTro5.chr6             30157526 148 + 175400573 CCGCCCCGAACTCTCCT---CCTGCTACTCTCGGGGGCCCTGGCCCTGACCCAGACCTGGGCGGGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCTGCGGGGAGAAGCAAGGGGCCCGCCTGGCGGGGGCGCAGGACCCGGGAAGCCGCGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30388153 148 + 173848474 CCGCCCCGAACTCTCCT---CCTGCTACTCTCGGGGGCCCTGGCCCTGACCCAGACCTGGGCGGGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCTGCGGGGAGAAGCAAGGGGCCCGCCTGGCGGGGGCGCAGGACCCGGGAAGCCGCGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      42260 148 +   2037526 GCGCCCCGAACCCTCGT---CCTGCTACTCTCGGGGGCCCTGGCCCTGACCCAGACCTGGGCGGGTGAGTGCGGGGTCGGGAGGGAAACCGCCTCTGCTGGGAGAAGCAAGGGGCCCGCCAGGCGGGGGCGCAGGACCGGGGAAGCCGCGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74722891 148 + 122973662 GCGCCCCGAACCCTCCT---CCTGCTACTCTCGGGGACCCTGGCCCTGACCCAGACCTGGGCGGGTGAGTGCGGGGCCGGGAGGGAAACGGTCTCTGCGGGGAGGAGGGAGGGGTCCGCCTGGGGTGGGCACAGGACTGGTAGAGCCGAGC
i nomLeu3.chr1a            C 0 I 390
s rheMac8.chr4             30545042 148 + 172585720 GCGTCCCGAACCCTCCT---CCTACTGGTCTCGGGTACCCTGGCCCTGACCGAGACCTGGGAGGGTGAGTGCGGGATCCAGAGGGAAATGGCCTCTGCCAAGAGGAGCGAGGGGCCCGCGCAGCTGGGGCGCAGGACCCGGGGAGCCGCGC
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     190578 147 -    863181 GCGCCCCGAACCCTCCT---CCTGTTGCTCTCTGGGGCCCTGGTCCTAACAGAGACCTGGGTGGGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCTGCGGGAAGGAGCTAGGGGCCCG-GCCGCAGGGGCGCAGGACCCCGGGAGCCGCGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29363127 147 -  71996105 GCGCCCCGAACCCTCCT---CCTGCTGCTCTCGGGGACCCTGGCCCTGACCAAGACCTGGGCCGGTGAGTGCCAGGTCAGGAGGGAAACGGCCTCTGCGGGGAGGAGGGAGGGACCGC-CCGGCGAGGGCGCGGGACCCGGGGAGCCGCGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     190106 147 +    273075 GCGCCCCGAACCCTCCT---CCTGTTCCTCTCTGGGGCCCTGGTCCTAACAGAGACCTGGGTGGGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCTGCGGGAAGGAGCTAGGGGCCCG-GCCGCAGGGGCGCAGGACCCCGGGAGCCGCGC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      42268 148 -   1829203 GCGCCCCGAACCGTCCT---CCTGGTGCTCTCAGGGGCCCTGGCCCTGACCCAGACCTGGGCAGGTGAGTGTGGGGTCGGGAGGGAAACGGCCTCTGCGGGGAGCAGCGAGGGGCCCGCCTGGCTGGGGCGCAGGACGCGCGGAGCCGCGC
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     522194 148 -   1771730 GCGCCCCGAACCCTCCT---CCTGCTGCTCTTGGGGGCCCTGATCGTGACCGAGACCTGGGCGGGTGAGTGCAGGGTGGGGAGGGAAACCGCCTCTCCGGGGAGGAGTAAGGGGCCTGCCCAGCGGGGGCGCAGGACCGAGAGAGCCAGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      12791 148 -    383796 GCGCCCCGAACCCTCCT---CCTGCTGCTCTCGGGGGCCCTGGCCCTGACCGAGACCTGGGCGGGTGAGTGCGGGGTCGGGAGGGAAACGGGCTCTGTGGGGAGGAGCGAGGGGCCCGCCTGACGGGGGCGCAGGATCCAGGGATCCAGGC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17266487 147 -  18854210 GCTCCCAGAATCCTCCT---CCTGCTGCTCTTGGCGGCCCTGGTCCTAACCGAGATCTCTGCAGGTGTGTGCGGGGTCGGGAAGGAAACAGCCTTTGCCGGGAGG-GCGAGGGGACCGCCCGAAGGGGATGCAGGACAAGGGAAGCTGCTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57997779 140 -  94987271 GCGCTCTCTACCCTCCTATCCTTGCTGCTCACCGGAGCTTTGGCCTTGACCCTGGTTCGCGCAGGTGAGTGC-GGGTCAGGAGGGAAACTGCCTCGGCCAAGGAGAGTGAGGG----------CAGCACTGGAGAAGCCAAGAAGCCGCAC
i mm10.chr17               N 0 C 0

a score=949424.000000
s hg38.chr6_GL000254v2_alt  1286793 188 +   4827813 CGGGAGGAGGGTCGGGCGGGTCTCA--------GCCACTCCT----------------------------------------------------------------------------------------------------------CGTCCCCAGGCTCTCACTCCATGAGGTATTTCTTCACAT-CCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGC------TTCATCGCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAGGATGGAGCCGCGGGC
s panTro5.chr6             30157674 188 + 175400573 CGGGAGGAGGGTCGGGCGGGTCTCA--------GTCACTCCT----------------------------------------------------------------------------------------------------------CGCCCCCAGGCTCCCACTCCATGAGGTATTTCTACACCT-CCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGC------TTCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAGGATGGAGCCGCGGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30388301 188 + 173848474 CGGGAGGAGGGTCGGGCGGGTCTCA--------GTCACTCCT----------------------------------------------------------------------------------------------------------CGCCCCCAGGCTCCCACTCCATGAGGTATTTCTCCACAT-CGGTGTCCCGGCCCGGCCGCGGGGAGCCCCGC------TTCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAGGATGGAGCCGCGGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      42408 188 +   2037526 CGGGAGGAGGGTCGGGCGGGTCTCA--------GCCACTCCT----------------------------------------------------------------------------------------------------------CGCCGCCAGGCTCCCACTCCATGAGGTATTTCTCCACAT-CCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGC------TTCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAGGATGGAGCCGCGGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30545190 187 + 172585720 CAGGAGGAGGATCGAGAGGGTCTCA--------GCCCCTCCG----------------------------------------------------------------------------------------------------------CGCCCCCAGGTTCCCACTCCATGAGGTATTTCAGCACCG-CCTTGTCCCGGCCCGGCCGCGGGG-GCCCCGC------TTCATTGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCGGCGAGTCCGAGGATGGAGCCGCCGGC
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     190725 188 -    863181 CGGGAGGAGGGTCGGGCGGGTCTCA--------GCCCCTCCT----------------------------------------------------------------------------------------------------------CGCCCCCAAGCTCCTACTCCTTGAGGTATTTCTACACCT-CCGTGTCCCGGCCGGGCTGCGGGGAGCTCCGC------TACATCTCCGTGGGCTACGTGGACGACACGCAGTTCATGCGGTTCGACAGCGACTCCGCGAGTCCGAGAATGGAGCCGCGGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29363274 173 -  71996105 GGGGAGGAGGGTCGGGCGGGTCTCA--------GCCTCACCG----------------------------------------------------------------------------------------------------------CGCTCCCAGGCTCCCTCTCCTTGACATATTTCAGCACCTCCCGTGTCCCGCCCCGGCCGCGGGGAGCCCCGC------TTCATCGCAGTGGGCTACGTGGACGACACGCAGTTCCTGCGGTTCGACAGTGACGCCGCGAGTCCGA----------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     190253 188 +    273075 CGGGAGGAGGGTCGGGCGGGTCTCA--------GCCCCTCCT----------------------------------------------------------------------------------------------------------CGCCCCCAAGCTCCTACTCCTCGAGGTATTTCTACACCT-CCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGC------TACATCTCCGTGGGCTACGTGGACGACACGCAGTTCATGCGGTTCCACAGCGACTCCGCGAGTCCGAGAATGGAGCCGCGGGC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      42416 188 -   1829203 GGGGAGGAGGGTCGGGCGGGTCTCA--------GCCTCTCCT----------------------------------------------------------------------------------------------------------CGCCCCCAGGCTCCCACTCCATGAGGTATTTCTACACCT-CCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGC------TTCTTCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAGGATGGAGCCGCGGGC
i colAng1.NW_012115577v1   C 0 M 438
s cebCap1.NW_016107755v1     522342 194 -   1771730 TGGGAGGAGGGTTGGGAGGGTCTCA--------GCCCCTTCT----------------------------------------------------------------------------------------------------------CGCCCCCAGGGTCACACTCCTTGAGGTATTTCAGCACCG-CCACGTCCCGGCCCGGCCGCGGGGAGCCCCGTTACAGGTACATCGGAGTGGGCTACGTGGACGACACGCTGTTCGTGCGGTTTGACAGCGACGACCCGAGTCCGAGGATGGAGCCGCGGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      12939 194 -    383796 TGGGAGGAGGGTCGGGCGGGTCTCA--------GCCCCTCCT----------------------------------------------------------------------------------------------------------CGCCCCCAGGCTCCCACTCTTTGAGGTATTTCAGCACCG-CCGTGTCCTGGCCTGGCCGTGGGGAGCCCCGATACAGGTACATCGCTGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCGAGTCCGAGGATGGAGCCGCGGGC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17266634 187 -  18854210 CAGGAGTGTGTCCCGCCGGGTCTCA--------GTCCCTCC-----------------------------------------------------------------------------------------------------------CGCCCCCAGGCTCCCATTCCCTGCGGTATTTCTTCACCT-CCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGA------TACATCGCTGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTAGACAGCGACACAGAGAATCTGAGGATGGAGCCGTGGGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57997919 293 -  94987271 ---------AACCGAAATAGCCTCACCACTCTTCCCTCTCCTTTCTCCAATCTTCATCCTGAACCCCACGCCCTGCTCCCCTTCTGTCACCTACACCTCTACAAGTCCCGGaaaaaaaaaaaaaaaaaaaaaaaGGATTTGTGTCTTCCGTCGCCAGGCATCCATTCCTTGCAGTTTTTTGCCACCA-CCATGACCCAGCCTGGTTTGAGGGAGCATTCC------TTCATCTTTGTCGTCTTCGTGGACGACACACAGTTCCTGTGCTACAACAATAAGGGGAAAAATCAGAGAATGGAGCCACGCGC
i mm10.chr17               C 0 C 0
e nomLeu3.chr1a            74723039 390 + 122973662 I

a score=429264.000000
s hg38.chr6_GL000254v2_alt  1286981 126 +   4827813 GCCGTGGATAGAGCAGGAGGGTCCGGAGTATTGGGACGGGGAGACACGGAAAGTGAAGGCCCACTCACAGACTCACCGAGTGGACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGG
s panTro5.chr6             30157862 126 + 175400573 GCCGTGGATAGAGCAGGAGGGTCCGGAGTATTGGGACCAGGAGACACGGAATATGAAGGCCTCCGCACAGACTGACCGAGTGGACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGACGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30388489 126 + 173848474 GCCGTGGATAGAGCAGGAGGGTCCGGAGTATTGGGACGAGGAGACACGGAGTGTGAAGGCCCACTCACAGACTGACCGAGTGGACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGACGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      42596 126 +   2037526 GCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCGGAACACACGGAACGTGAAGGCCCACTCACAGACTGACCGAGTGGACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGACGG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30545377 126 + 172585720 GCCGTGGGTGGAGCAGGAGCGGCCGGAGTATTGGGACCGGAGCACACGGAACGCCAAGGTCCACGCACAGACTGACAGAGTGAACCTGCAGACCCTGCTCCGCTACTACAACCAGAGCGAGGCCCA
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     190913 123 -    863181 GCAGCGGGTGGAGCAGTAGGGGCCCGAGTATTGGGACCTGAACCCACAGCTCGCCAAGGCCAACGCAGAGACTTTCCGAGAGAACCTGCGTACCGCGCTCAG---CTATAACCAGAGCAAGACTGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29363447 121 -  71996105 -----GGATGGAGCAGGAGGGGCCGGAGTATTGGGAGTTGCAGACACTGGGCGCTAAGGCCCAGGCACAGACTGGCTGAGTGAACCTGAGGACCCTGCTCCGATACTACAACCAGAGCGAGGCCGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     190441 123 +    273075 GCAGCGGGTGGAGCAGGAGGGGCCCGAGTATTGGGACCTGAACCCACAGCTCGCCAAGGCCAACGCAGAGACTTTCCGAGAGAACCTGCGTACCGCGCTCAG---CTATAACCAGAGCAAGACTGG
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     522536 126 -   1771730 GCAGTGGGTGGAGCAGGAGGGGCCGGAATATTGGGAGCACCAGACACGGGTCGTCAAGGCCAACGCCCAGACTGACCGAGTGAAACTGCGGAAACTGCTTGGCTACTACAACCAGAGCGAGGGCGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      13133 126 -    383796 GCCCTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGAGGATCAAACACGGGTCGCCAAGGCCAACGCACAGACTGACCGCGTGGCCCTGCGGAAACTGCTCCGCTACTACAACCAGAGCGAGGCCGG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17266821 117 -  18854210 ---------GGAGCGGGAGGGGCCGGAGTATTGGGAGGAGGAGACACGGCGCGTCAAGGGCTATGCACTGAGTGACGCAGTGTGCGTGGACATCCTGCGCGGCCTCTACAACCAGAGCGAGGGAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57998212 126 -  94987271 TCTGTGGGTGAAGCAGATGGGGCCAGAGTATTGGGAACAGCAGACCAGGACTGTCAAGGTCATTGAGAAGATTGCCCTAGTGAATTTGCAGGAGGCCATGGACATCTACAACCACAGCAAGGATGG
i mm10.chr17               C 0 C 0
e colAng1.NW_012115577v1      42604 438 -   1829203 M
e nomLeu3.chr1a            74723039 390 + 122973662 I

a score=139555.000000
s hg38.chr6_GL000254v2_alt  1287107 41 +   4827813 TGAGTGACCCC-------GGCCCG-----------------GGGCGCAGGTCACG---ACCTCTCATC
s panTro5.chr6             30157988 41 + 175400573 TGAGTGACCCC-------GGCCCG-----------------GGGCGCAGGTCACG---ACCCCTCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30388615 41 + 173848474 TGAGTGACCCC-------GGCCCG-----------------GGGCGCAGGTCACG---ACCCCTCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      42722 41 +   2037526 TGAGTGACCCC-------GGCCCG-----------------GGGCGCAGGTCACG---ACCCCTCATC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30545503 41 + 172585720 TGAGTGACCCC-------GGCCCG-----------------AAGCACAGGTCACG---ACCCTTCCCC
i rheMac8.chr4             C 0 I 3
s macNem1.NW_012012100v1       4803 41 +   1495729 TGAGTGACCCC-------GGCCCG-----------------GAGCACAGGTCACG---ACCCTTCCCC
i macNem1.NW_012012100v1   N 0 I 3
s cerAty1.NW_012002535v1     191036 41 -    863181 TGAGTGACGCG-------GCCCCA-----------------GGGCACAGGTCGCG---ACCCCTCCCC
i cerAty1.NW_012002535v1   C 0 I 3
s chlSab2.chr17            29363568 44 -  71996105 TGAGTGACCCT-------GGCCCA-----------------GGGCGCATATCACTTACTCCCGGCTTC
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012101121v1     190564 41 +    273075 TGAGTGACGCG-------GCCCCA-----------------GGGCACAGGTCGCG---ACCCCTCCCC
i manLeu1.NW_012101121v1   C 0 I 3
s cebCap1.NW_016107755v1     522662 65 -   1771730 TGAGCGACTCTggggcggggccgggcgggggggcgggAGGAGGGAGCAGGTCAGG---ACCCCTCCCC
i cebCap1.NW_016107755v1   C 0 I 3
s aotNan1.NW_018496904v1      13259 41 -    383796 TGAGCGACTCC-------GGCTGG-----------------GGGAACAGGTCACG---ACCCCTCCCC
i aotNan1.NW_018496904v1   C 0 I 3
s otoGar3.GL873550         17266938 41 -  18854210 TGAGAGATCCG-------GGGCCG-----------------GGTCGCAGGTCACG---ACTCCTCTCC
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               57998338 19 -  94987271 TGAGTAACCCT-------TTCACA--------------------------TC----------------
i mm10.chr17               C 0 C 0
e colAng1.NW_012115577v1      42604 438 -   1829203 M
e nomLeu3.chr1a            74723039 390 + 122973662 I

a score=182074.000000
s hg38.chr6_GL000254v2_alt  1287148 76 +   4827813 CCCCACGGACGGGCCAGGTCG-CCCACAGTCTCCGGGTCCGAGATCCGC-CCCGAAGCCGCGGGACC--CCGAGACCCTT
s panTro5.chr6             30158029 76 + 175400573 CCCCACGGACGGGCCAGGTCG-CCCACAGTCTCCGGGTCCGAGATCCAC-CCCGAAGCCGCGGGACC--CCGAGACCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30388656 76 + 173848474 CCCCACGGACGGGCCAGGTCG-CCCACAGTCTCCGGGTCCGAGATCCAC-CCCGAAGCCGCGGGACC--CCGAGACCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      42763 76 +   2037526 CCCCACGGACGGGCCAGGTCG-CCCACAGTCTCCGGGTCCGAGATCCAC-CCCGAAGCCGCGGGACC--CCGAGACCCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74723429 77 + 122973662 CCCCACTGACGGGCCGGGTCGCCCCACAGTCTCCGGGTCCGAGATCCAC-CCCGAAGCCGCGGGACC--CCGAGACCCTT
i nomLeu3.chr1a            I 390 C 0
s rheMac8.chr4             30545547 77 + 172585720 C-GCACGGACCGCCCGGATCC-CCCCGAGTCTCCGGCCCCGAGATCCAC-CCCGAGGCTGTGGGACCAGCCCAGATCCTC
i rheMac8.chr4             I 3 C 0
s macNem1.NW_012012100v1       4847 77 +   1495729 C-GCACGGACCGCCCGGATCC-CCCTGAGTCTCCGGCTCCGAGATCCAC-CCTGAGGCTGTGGGACCAGCCCAGATCCTC
i macNem1.NW_012012100v1   I 3 I 93222
s cerAty1.NW_012002535v1     191080 24 -    863181 C-------------------------------------------CCCAC-------------GGACCCGCCCAGACCCTC
i cerAty1.NW_012002535v1   I 3 C 0
s chlSab2.chr17            29363615 78 -  71996105 CCTCGCTGACGGCCCTGGTCC-CACTGAGTCTCCGGGTCCAAGATCGAC-CCCGAGGCTGCGGGACCTGCAGAGATCCCA
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012101121v1     190608 24 +    273075 CCCCAC--------------------------------------------------------GGACCCGCCCAGACCCTC
i manLeu1.NW_012101121v1   I 3 C 0
s cebCap1.NW_016107755v1     522730 77 -   1771730 CCCCACGGAGGGCCTGGGTCT-CCCCGAGCCTCCCG-TGCGAGATCCAC-CCTGAGACTACCGGACCTGCCCAGATTCTC
i cebCap1.NW_016107755v1   I 3 C 0
s aotNan1.NW_018496904v1      13303 77 -    383796 CCCTACTGAGGGCCTGGGTCT-CCCCGAGTCTCCCG-TCCGAGATCCAC-CCTGAGACTAGGGGACCTGCCCAGATTCTC
i aotNan1.NW_018496904v1   I 3 C 0
s otoGar3.GL873550         17266980 78 -  18854210 CCGCACAGACAAGCCCGCGTC-GCCTCTGTCTCCGGGTCCGCGACTTTC-CCCGAGGCTGCGGGACCCGGTGAAACCTTA
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               57998357 63 -  94987271 CCTTACGGACGGACGA------CCCTGAGTTCCCGGGTCC----TCAGCTCCCGAGGTTT--GGCCC--CCAAGGTT---
i mm10.chr17               C 0 C 0
e colAng1.NW_012115577v1      42604 438 -   1829203 M

a score=911339.000000
s hg38.chr6_GL000254v2_alt  1287224 214 +   4827813 ----GCCCCG-GGAGAGGCCCAGGCG--CCTTTACCCGGTTTCATTTTCAGTTTAGGCCAAAAATCCCCCCAGGTTggtcggggc--ggggcggggctcgggggaccgggcTGACCGCGGGGTCCGGGCCAGGTTCTCACACCGTCCAGAGGATGTATGGCTGCGACGTGGGGTCGGACTGGCGCTTCCTCCGCGGGTACCACCAGTACGCCTACGACGGCAA
s panTro5.chr6             30158105 214 + 175400573 ----GCCCCG-GGAGAGGCCCAGGCG--CCTTTACCGGGTTTCATTTTCAGTTTAGGCCAAAAATCCCCCCgggttggtcggggc--cgggcggggcttgggggactgggctgaccgcggggtcggggcCAGGTTCTCACACCATCCAGATAATGTATGGCTGCGACGTGGGGTCGGACGGGCGCTTCCTCCGCGGGTACCGGCAGGACGCCTACGACGGCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30388732 209 + 173848474 ----GCCCCG-GGAGAGGCCCAGGCG--CCTTTACCCGGTTTCATTTTCAGTTTAGGCCAAAAATTCCCCCGGGTTGGTCG-------GGGCGGGGCTCGGGGGACCGGGCTGACCGCGGGGTCGGGGCCAGGTTCTCACACCATCCAGTTAATGTATGGCTGCGACGTGGGGTCGGACGGGCGCTTCCTCCGCGGGTACCGGCAGGACGCCTACGACGGCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      42839 214 +   2037526 ----GACCCG-GGAGAGGCCCAGGCG--CCTTTACCCGGTTTCATTTTCAGTTTAGGCCAAAAATCCCCCCGGGTTGGTCGGGGC--CGGGCGGGGCTCGGGGGACCGGGCTGACCGCGGGGTCGGGGCCAGGTTCTCACACCATCCAGAGGATGTATGGCTGCGACGTGGGGTCGGACGGGCGCTTCCTCCGCGGGTACCAGCAGGACGCCTACGACGGCAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74723506 214 + 122973662 ----GACCCG-GGAGAGGCCCAGGCG--CCTTTACCCGGTTGCATTTTCAGTTTAGGCCAGAAATCCCCGCGGGTTGGTCGGGGC--GGGGCGGGACTCGGGGGACGGGGCTGACCGCGGGCGCGGGGCCAGGTTCTCACACCATCCAGATAATGTATGGCTGCGACATGGGGTCCGACGGGCGCTTCCTCCGCGGGTACCGGCAGGACGCCTACGACGGCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30545624 214 + 172585720 ----GACCGG-GTAGAGCCCCAGGCG--CCTTTACCGGGTTTCATTTTCAGTTTAGGCCA-AAATCCCCgcgggtcggtcggggc-gggggcggggcttggtgggcggggctgaccgtggaggcggggccagggTCTAACACCCTCCAGATAAAGTATGGGTGAGACTTGGGGCTGGAAGGGCGCTTCCTCCGCGGTTATGAACAGCACGCCAAAGATGGCAA
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     191104 205 -    863181 ----GACCTG-GGAGAGTCCCAGGCG--CCTTTACCTGGTTTCGTTTTCAGTTTAAGCCA-AAATCCTCGCGGGTTGGTCTGAGCGGGGGGCAGGGCTCGGTGGGCGGGGCTGACCGCGGGGGCGGGGCCACGGTCTCACACCTCTCAGTGGATGCATGGCTGCGAGGGGGAGCACTATGGGCGCCTCCTCCGCGGGTATGACCAGT----------TTGCAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29363693 214 -  71996105 ----GACCCT-GGAGAGCCCCAGGAG--CCTTTACCAGGTTTCATCTTCAGTTGAGGCCA-AAATCTCTGCAGGTTGCTAGGGGCC-GGGCCGGGGTTGGGTGGGCGGGGCTGACCGCGGGAACTGGGCCAGGGTCTCACACCCTCTAGGTAATGTTTGGCTGCAACCTGGGGCCCGACGGATGCCTCCTCCGCTGGTATGAACAGTATGCCTACGACGGCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     190632 205 +    273075 ----GACCTG-GGAGAGTCCCAGGCG--CCTTTACCTGGTTTCGTTTTCAGTTTAGGCCA-AAATCCTCGCgggttggtctgagctgggggcagggctcggtgggcggggctgACCGCGGGGGCGGGACCACGGTCTCACACCTCTCAGTGGATGCATGGCTGCGAGCGGGGGCACTATGGGCGCCTCCTCCGCGGGTATGACCAGTTT----------GCAA
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     522807 213 -   1771730 ----CACCCG-GGAGAGCCCCAGGCG--TCTTTACCCAGTTTCAT-TTCAGTTTAGGCCA-AAATCCCCGCAGGTTGGTCGGGGC-GTGGGCGGGACTCGGTGGGCGGGGCTGACCGCGGGGGCTGGGCCAGGGTCTCACACCCTCCAGGGCACTAATGGCTGCGATGTGGGACCCGATGGACGCTTCCTCCGCGGGTATCACCAGCACGCCTACGACGGCAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      13380 213 -    383796 ----CACCCC-GGAGAGCCCCAGGCG--CCTTTACCTGGTTTCAT-TTCAGTTTAGGCCA-AAATCCCCGCGGGTTGGTCGGGGC-GTGGGCAGGACTTGGTGGGCGGAACTGACCGCGGGGGCGGGGCCAGGGTCTCACACGCTCCAGGGAACGAATGGCTGCGATGTGGGACCGGATGGACGCTTCCTCCGCGGATATCACCAGCACGCCTACGACGGCAA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17267058 213 -  18854210 ----GACGCG-GGAAGGGCGCGCGAGGACTTTGACCCGCTTTCGTTTTCAGTTTAGAGCA-AAATCCCGGCTGGGTGGTTGGGGC--GGGGCGGGGC--GGTGGGCGCGGCTGACCGCGGGAGCCGGGCCAGGGTCTCACACCATCCAGAGTATGTACGGCTGCGATCTGAGGCCGGACGGGCGCTTCCTCCGCGGGTACTGGCAGTACGCCTACGACGGCGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57998420 162 -  94987271 GCCAGACTTGAGGAGA------------CCCTGAACCGGTTTCGTGCAAGGTTGTGGTCC-AAAT------------------------------------------------ACGACCGGGGCGGGGCCAGGCTCTCACGTCTTTCAGTGTGTGTATGGCTGCGAAGTGGGGCCAGATGGACTCTTCCTCCGTGGGCATGAGAAGCACGCATACGACGGCCG
i mm10.chr17               C 0 C 0
e colAng1.NW_012115577v1      42604 438 -   1829203 M
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=1367992.000000
s hg38.chr6_GL000254v2_alt  1287438 247 +   4827813 GGATTACATCGCCCTGAAAGAGGACCTGCGCTCTTGGACC-GCGGCGGACATGGCAGCTCAGACCACCAAGCACAAGTGGGAGGCGGCCCATGTGGCGGAGCAGTTGAGAGCCTACCTGGAGGGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCACGGGTACCAGGGGCCACGGGGCGCCTCCCTGATCGCCTGTAGATCTCCCGGGCT---GGCCTCCCACA
s panTro5.chr6             30158319 247 + 175400573 GGATTACATCGCCCTGAACGAGGACCTGCGCTCTTGGACC-GCGGCGGCCATGGCAGCTCAGATCACCAAGCGCAAGTGGGAGGCGGCCCATGCGGCGGAGCAGCTGAGAGCCTACCTGGAGGGCCGGTGCGTGGACGGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCACGGGTACCAGGGGCCACGGGGCGCCTCCCTGATCGCCTGTAGATCTCCCGGGCT---GGCCTCCCACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30388941 247 + 173848474 GGATTACATCGCCCTGAACGAGGACCTGCGCTCTTGGACC-GCGGCGGACATGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCATGAGGCGGAGCAGCTGAGAGCCTACCTGGAGGGCCGGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAACGCACGGGTACCAGGGGCCACGGGGCGCCTCCCTGATCGCCTGTAGATCTCCCGGGCT---GGCCTCCCACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      43053 245 +   2037526 GGATTACATCGCCTTGAACGAGGACCTGCGCTCCTGGACC-GCGGCGGACATGGCAGCTGAGATTACCAAGCGCAAGTGGGAGGCGGCCCATTTTGCGGAGCAGTTGAGAGCCTACCTGGA-GGCACGTGCGTGGAGTGGCTCCGCAGACACCTGGAGAACGGGAAGGAGACGCTGCAGCGCACGGGTACCAGGGGCCACGGGGCGCCTCCCTGATCGCCTGTAGATCTCCCGGGCT---GGCCT-CCACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74723720 247 + 122973662 GGATTACATCTCCCTGAACGAGGACCTGCGCTCTTGGACC-GCGGCGGACACGGCGGCTCAGATCACCAAGCACAAGTGGGAGGCGGCCGGTGAGGCGGAGCAGCGGAGAGCCTACTTGGAGGGGACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGATGCTGCAGCGCGCGGGTACCAGGGGCCACGGGGAGCCTCCCTGATCGCCTGTAGATCTCCCGGGCT---GGCCTCCCACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30545838 229 + 172585720 GGATTACATCGCACTTAACCGGGGCTTGTGCTCCTGGACC-GCAGCTGACAC------------------GCGCAAGTGGGAGGCAGAGGAATTTGCAAAGCAGGTCAGGGCCTACCTGGAGGGCATGTGCGTGGGGTGGCTCCGCAGACACCAGGAGAACGGGAAGGAGACGCTGCAGCGCGTGGGTATCACGGGGCACGGGACGCCTCCCTGATCGCCTGTAGATCTCCCGGGCT---GGGCTCCCACA
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     191309 245 -    863181 GGATTACATAGCCCTGAACGAGGACCTGCGCTCCTGGACA-GCCGCGGACATGGTGGCTCAGGTCACCCAGCAAAAGTGGGAGGCGGCCGGTGAGGCAGAG--GCTGAGAGTTTACATGGAGGGCACGTGCGTGGAGTAGCTCCGCGGATACCTGGAGAACCGGAAGGAGACGCTGCAGCACGCGCGTACCAGGGGCCACGGGGTGCCTCCCTCATCTCCTGTAGACCCCCCAGGCT---GGCCTCGCACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29363907 239 -  71996105 GGATTACATCGCCCTGAACGAGGACCTGAGCTCCTGGACACGCCGCGGG---------TCAGACTACCCTGCGCAAGTGGGAGGCGGCCAATGTGGCTGAGCGAAGGAGAGCCTATCTGGAGGGCACCTGCGTGGAGTGGCTCCGCAGGCACCTGTAGAACTGGAAGGAGACACTGCAGCGCGCGGGTACCAGGGGCCATGGGGTGCCTCCTAGATCTCCTGTAGATCTCCTGGGCT---GGCCTCGCACG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     190837 247 +    273075 GAATTACATAGCCCTGAACGAGGACCTGCGCTCCTGGACA-GCCGCGGACATGGTGGCTCAGGTCACCCAGCACAAGTGGGAGGCGGCCGGTGAGGCAGAGAGGCTGAGAGTTTACATGGAGGGCACGTGCGTGGAGTAGCTCCGCGGATACCTGGAGAACCGGAAGGAGACGCTGCAGCACGCGCGTACCAGGGGCCACGGGGTGCCTCCCTCATCTCCTGTAGACCCCCCAGGCT---GGCCTCGCACA
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      43042 247 -   1829203 GGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACC-GCCGCGGACATGGCGGCTCAGAACACCCAGCGGAAGTGGGAGGCGGCCGGTGCGGCGGAACAGATGAGAGCCTACCTGGAGGGCCGGTGCGTGGAGTCGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCAGGTACCAGGGGCCACGGGGCGCCTCCCTGATCGCCTGTAGATCTCCGGGGCT---GGCCTCCCACA
i colAng1.NW_012115577v1   M 438 C 0
s cebCap1.NW_016107755v1     523020 247 -   1771730 GGACTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACC-GCGGCGGACACAGCGGCTCAGATCACCCAGCGCATGTATGAGGCAGAAAAATATGCAGAGGAGTTCAGCACCTACCTGAAGGGCGGGTGCGTGGAGTGGCTCCACAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGACCACAGGGCGCCTTCACCATCTCCTGTAGATCTCCCGGGCT---GGCCTCGCACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      13593 246 -    383796 GGATTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACA-GCGGCGGACGTGGCGGCTCAGATCACCCAGCGCATGTATGAGGCAGAGAACTATGCAGAGGAGTTCAGCACCTACCTGAAGGGCGGGTGCGTGGAGTGGCTCCACAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCCCGGGTACC-GAGGCCACGGGGCGCCTTCACTGTCTCCTGTAGATCTCCCCGGCT---GGCTTCGCACA
i aotNan1.NW_018496904v1   C 0 I 114
s otoGar3.GL873550         17267271 242 -  18854210 CGACCATATCACCCTGAACCAGGACCTGCGCTCCTGGACC-GCGACGGACTCTGTGGCTCAGATTTCCGTGCCCTATTTGGAGGCGAGCGGTCGTGCGGAGTACTGGAGGGTCTACCTGGAGGGCAGGTGTGTGGAGTCTCTCCGCAGACACCTGGAGTACGGGAAGGACACGCTGCAGCGCGCAGGTACGAGGGG-CGTGGAGCACCTCCCACAT---CTGTAGGTCTCCCAGCTT---GGCGTC-CACA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57998582 245 -  94987271 CGATTACCTCACCCTAAGCCCGGACCTGCACTCCTGGGTC-GCAGGCGACACAGCTGCGCAGATCACGCTGCGCAGGTGGGAGAAGTCTGGTGTCTCTGAGCAAAGGCAATCCTTCTTGAAGGGCGAGTGTGTGGAGTCGCTCCGCACATACCTGGAGATAGGGAAGGAGACTCTGCTAAGAACAGGTATATGAGGCTGCCGGGAATCTCCTCCATCTGTTCTGGGGCT--GGGGCTCACAGTCTCTC---
i mm10.chr17               C 0 C 0
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=281870.000000
s hg38.chr6_GL000254v2_alt  1287685 54 +   4827813 AGGAGGGGAGACAATTGGGACCAACACTAGAATATCGC--CCTCCCTCTGGTCCTG
s panTro5.chr6             30158566 54 + 175400573 AGGAGGGGAGACAATTGTGACCAACACTAGAATATCAC--CCTCCCTCTGCTCCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30389188 54 + 173848474 AGGAGGGGAGACAATTGGGACCAACACTAGAATATCGC--CCTCCCTCTGGTCCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      43298 54 +   2037526 AGGAGGGGAGACAGATGGGACCAACACTAGAATATCAC--CCTCCCTCTGGTCCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74723967 54 + 122973662 AGGAGGGGAGGAAAATGGAACCAACACTAGAATATCGC--CCTCACTCTGGTTCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30546067 54 + 172585720 AGAAGAGAAGGAAAATGAGACCAACACTAGAATGTCTA--ACTCCCTCTGGTCCTG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     191554 54 -    863181 AGGAGGGGAGGAAAATGGGACATACACTAGAATATTTC--CCTCCCTCCAGTCCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29364146 54 -  71996105 AGGAAGGGAAGAAAATGGCAACACCACCAGATTATCGC--CCTCCCTCCGGTCCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     191084 54 +    273075 AGGAGGGGAGGAAAATGGGACATACACTAGAATATTTC--CCTCCCTCCAGTCCTG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      43289 54 -   1829203 AGGAGGGGAGACAAATTGGATCAACACTGTAATATCGC--CCTCCCTCTGGTACTG
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     523267 54 -   1771730 AGTAGGGGAGGAAAAAGAGACCAACGCTATAATATTGC--CCTCCCGCTGGTCCTG
i cebCap1.NW_016107755v1   C 0 I 122
s aotNan1.NW_018496904v1      13953 54 -    383796 AGGAGGGGAGAAAAATGGGACCAATGCTATAATATCGC--CCTCCCTCTGGTCCTG
i aotNan1.NW_018496904v1   I 114 C 0
s otoGar3.GL873550         17267513 51 -  18854210 -GGAGGGAAGAAAAT--GGGCCAACACTAGAATATCGC--CCTCCTTCTGGTCCAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57998827 54 -  94987271 TGGAAGGGAGCAAAATGAG--CTGGGCTAGAATACTGCTTCTTTTCTTTGCATCTG
i mm10.chr17               C 0 C 0
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=26244.000000
s hg38.chr6_GL000254v2_alt  1287739 8 +   4827813 -AGGGAGAG
s panTro5.chr6             30158620 8 + 175400573 -AGGGAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30389242 8 + 173848474 -AGGGAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      43352 8 +   2037526 -AGGGAGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74724021 8 + 122973662 -AGGGAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30546121 8 + 172585720 -AGGGAGAG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     191608 8 -    863181 -AGGGAGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29364200 8 -  71996105 -AGGGAGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     191138 8 +    273075 -AGGGAGAG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      43343 3 -   1829203 -AG-----G
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1      14007 8 -    383796 -AGTGGGAA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17267564 8 -  18854210 -AGTAGGAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57998881 8 -  94987271 AAGAAGGA-
i mm10.chr17               C 0 C 0
e cebCap1.NW_016107755v1     523321 122 -   1771730 I
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=678981.000000
s hg38.chr6_GL000254v2_alt  1287747 144 +   4827813 ---GAATCCTCCTGGG----TTTCCAGATCCTGTACCAGAGAG--TGACTCTGAGGTTCCGCCCTGCTCTCTGACACAATTAAGGGATAAAATCTCTGAAGGAAT-GACGGGAAGACGATCCCTCGAATACTGATGAGTGGTTCCCTTTGACAC
s panTro5.chr6             30158628 144 + 175400573 ---GAATCCTCCTGGG----TTTCCAGATCCTGTACCAGAGAG--TGACTCTGAGGTTCCGCCCTGCTCTCTGACACAATTAAGGGATAAAATCTCTGAAGGAGT-GACGGGAAGACGATCCCTCGAATACCGATGAGTGGTTCCCTTTGACAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30389250 144 + 173848474 ---GAATCCTCCTGGG----TTTCCAGATCCTGTACCAGAGAG--TGACTCTGAGGTTCCGCCCTGCTCTCTGACACAATTAAGGGATAAAATCTCTGAAGGAGT-GACGGGAAGACGATCCCTCGAATACTGATGAGTGGTTCCCTTTGACAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      43360 144 +   2037526 ---GAATCCTCCTGGG----TTTCCAGATCCTGTACCAGAGAG--TGACTCTGAGGTTCCGCCCTGCTCTCTGACACAATTAAGGGATAAAATCTCTGAAGGAAT-GACGGGAAGACGATCCCTCGAATACTGATGAGTGGTTCCCTTTGACAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74724029 143 + 122973662 ---GAATCCTCCTGGG----TTTCCAGATCCTGTACCAGAGAG--TGACTCTGAGGTTCCGCCCTGCTCTCTGACACAATTAAGGGATAAAATCTCTGAAGGAAT-GACGGGAAGACGATGTCTCGAATACTGATCGG-GGTTCCCTTTGACAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30546129 148 + 172585720 ---GAATCCTCCTGGGTTTCTTTCCAGATCCTGTACC--AGAGAATGACTTTGAGGGTCTACTCTGCTCTCTGATACAATTAAGGGATGACATCTCTGAGGGAAT-GAAGGGAAGACAATCCCTGGAATACTGATGAGTGGTTCCCTTTGACAC
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     191616 142 -    863181 ---GAATCCTGATGAG----TTTCCAGATCCTATACC--AGAG--TGATTCTGAGCGCCCGCCCTGCTCTCTGAAACAATTAAGGGATGAAGTCTCTGAGGGAGTAGAGGGGAAGACAATCCCTGAAATACTGATCAGGGGTT-CGTTTGACCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29364208 145 -  71996105 ---GAATCCTCCTGGG----TTTCCAGATCCTGTACCAGAGAG--TGACTCTGAGGGCCTGCCCTACTCTCTGGGACAGTCAAGGTATGAAGTCTCTGAGGGAGTGGAGGGGAAGACAATCCCTGGAATACTGATCAGGAGTTCCCTTTGACCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     191146 142 +    273075 ---GAATCCTGATGAG----TTTCCAGATCCTATACC--AGAG--TGATTCTGAGCGCCCGCCCTGCTCTCTGAAACAATTAAGGGATGAAGTCTCTGAGGGAGTGGAGGGGAAGACAATCCCTGAAATACTGATCAGGGGTT-CGTTTGACCC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      43346 143 -   1829203 ---GAATCCTCCTGGG----TTTCCAGATCCTGTACCAGAGAG--TGGTTCTGTGGTTCCGCCCTGCTCTCTGACACAGTTAAGG-ATAAAATCTCTGAGGGAAT-GACTGGAAGACAATCCCTCGAATACTGATCAGAGGTTCCCTCTGACAC
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     523443 144 -   1771730 ---GAATCCTCC-GGG----TTTCCGGATCCTGGACCAGAGAG--TGTCTCTGAGTATCCGACCTGCTCGCTGCGGCAGTTAAAGGATGAAGTCTTTGAGGGAATGGAAGGGAAGACAGTCCCTGAAGTACTGATCATTGGTCCCCTTTGACCC
i cebCap1.NW_016107755v1   I 122 C 0
s aotNan1.NW_018496904v1      14015 144 -    383796 ---GAATCCTCC-GGG----TTCCCGAATTCTGTATCAGAGAG--TGACTCTGAGTATCCGCTCTGCTCGCTGGGACAGTTAAGGGATGAAGTATTTGAGGGAATGGAAGGGAAGACAGTCCCTGGAATACTGATCAGCGGTCCCCTTTGACCC
i aotNan1.NW_018496904v1   C 0 I 6
s otoGar3.GL873550         17267572 123 -  18854210 ---------------G----ACTC----TCCCATACC--AGAG--TGACTCTGAGGGCCCACCTCTCCCTCTGGGACAGTTAAGGAACAAAGT---TAAGGGAAA-CAGAGGGACAGAGTTCCTGAGATACTGATCATTGATTTTCTCTAACCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57998889 117 -  94987271 AGAGAGTTCT---GGT----TTTCCCGATCAAACACTAGACAG--AGACTCT-----TGCGACTTTTTCTCGGG--------AGAGTTGAGATTGTCTCAGGAAG-GAAAGAGAGAAGATCCCTAAACAGCTG---------CCCCTTT-----
i mm10.chr17               C 0 C 0
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=-9231.000000
s hg38.chr6_GL000254v2_alt  1287891 10 +   4827813 ACACAGGCAG----
s panTro5.chr6             30158772  6 + 175400573 C----GGCAG----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30389394  6 + 173848474 C----GGCAG----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      43504 10 +   2037526 ACACCGGCAG----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74724172  6 + 122973662 C----GGCAG----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30546277  6 + 172585720 C----GGCAG----
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     191758  5 -    863181 C-----ACAG----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29364353  5 -  71996105 C-----ACAG----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     191288  5 +    273075 C-----ACAG----
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      43489  6 -   1829203 C----GGCAG----
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     523587  6 -   1771730 ----CTGCAA----
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         17267695  5 -  18854210 -----TGCAC----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57999006  7 -  94987271 -------CAGTCTG
i mm10.chr17               C 0 C 0
e aotNan1.NW_018496904v1      14159  6 -    383796 I
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=860594.000000
s hg38.chr6_GL000254v2_alt  1287901 178 +   4827813 CAGCCTTGGG---CCCGTGACTTTTCCTCTCAGGCCTTGTTCTCTGCTTCACACTCAATGTGTGTGGGGGTCTGAGTCCAGCACTTCTGAGTCCTTCAGCCTCCACTCAGGTCAGGACCAGAAGTCGCTGTT-CCCTC-TTCAGGGA-----------------------------CTAGAATTTTCCACGGAATAGGAGATTATCCCAGGT
s panTro5.chr6             30158778 161 + 175400573 CAGCCTTGGG---CCCGTGACTTTTCCTCTCAGGCCTTGTTCTCTGCTTCACACTCAATGTGTGTGGGGGTCTGAGTCCAGCACTTCTGAGTCTCTCAGCCTCCACTCAGGTCAGGACCAGAAGTCGCTGTT-CCCTC-CTCAGGGA----------------------------------------------ATAGAAGATTATCCCAGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30389400 161 + 173848474 CAGCCTTGGG---CCCGTGACTTTTCCTCTCAGGCCTTGTTCTCTGCTTCACACTCAATGTGTGTGGGGGTCTGAGTCCAGCACTTCTGAGTCTCTCAGCCTCCACTCAGGTCAGGACCAGAAGTCGCTGTT-CCCTC-CTCAGGGA----------------------------------------------ATAGAAGATTATCCCAGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      43514 178 +   2037526 CAGCCTTGGG---CCCGTGACTTTTCCTCTCAGGCCTTGTTCTCTGCTTCACACTCAATGTGTGGGGGGGTCTGAGTCCAGCACTTCTGAGTCCCTCAGCCTCCACTCAGGTCAGGACCAGAAGTCGCTGTT-CCCTC-TTCAGGGA-----------------------------CTAGAATTTTCCACGGAATAGGAGATTATCCCAGGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74724178 162 + 122973662 CAGCCTTGGGC--CCCGTGACTTTTCTTCTCAGGCCTTGTTCTCTGCTTCACACTCAATGTGTGTGGGGGTCTGAGTCCAGCTCTTCTGAGGCCCTCAGCCTCCACTCAGGTCAGGACCAGAAGTCGCTGTT-CCCTC-CTCAGGGA----------------------------------------------ATAGAAGATTATCCCAGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30546283 179 + 172585720 CAGCCTTGGGC--CCCGTAACTTTTCCTCTCAGGCCTTGTTCTCTGCTTCACATTCAATATGTGTAGGGGGCTGAGTCCAGCTCCTCTGAGTCCCTCAGCCTCCCCTCAGGTCAGGACCAGAAGTCACTGTT-CCCTC-TTCAGGGA-----------------------------CTAGAATTTTCCACGGAATAGGAGATTCTCCCAGGT
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     191763 180 -    863181 CAGCCATGGGC--ACCGGGACTTTTCCTCTCGGGGCTTGTTCTCTGCCTCACATTCAATGTGTGTGGGACTCTGACTTCAGCTCCTCAGAGTCCCTTGGCCTCCATTCAGGTCAGGGCCAGAAGTCCCTGCT-CCCCCGCTCAGAGA-----------------------------CTAGAACTTTCCAAGGAATAGCAGATTATCCCAGAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29364358 173 -  71996105 CAGCCTTGGGC--ACCAGGACCTTTCCCCTCAGGCCTTGTTCTCTGCCTCACACTCAATGTGTGTGGGGGTCTAACTCCAGCTCCTCTGAATCCCTTGGCCTCCAC-----TCAGGACCAGAAGTCCCTGCTCCCCCCGTTCAGAGA-----------------------------CTAGAACTTTCCAAGGAAT---AGATCATCCCAGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     191293 180 +    273075 CAGCCATGGGC--ACCGGGACTTTTCCTCTCGGGGCTTGTTCTCTGCCTCACACTCAATGTGTGTGGGAATCTGACTTCAGCTCCTCAGAGTCCCTTGGCCTCCATTCAGGTCAGGGCCAGAAGTCCCTGCT-CCCCCGCTCAGAGA-----------------------------CTAGAACTTTCCAAGGAATAGCAGATTATCCCAGAT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      43495 179 -   1829203 CAGCCTTGGGC--CCCGTGACTTTTCCTCTCAGGCCCTGTTCTCTGCTTCACACTCAATGTATGTAGGGGTCTGAGTCCAGCTCCGCTGAGTCCCTCAGCCTCCACTCAGGTCAGGACCAGAAGTCACTGTT-CCCTC-CTTAGGGA-----------------------------ATAGAATTTTCCATGGAATAGGAGATTATCCCAGGT
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     523593 166 -   1771730 CGGCCTCGGGC--CCCGTGACTTTTGCTCTCAGGC---CTTCTCTGCCTCACACAAAATGTGTGTGGTGCTCTGATTCCAGCTCTTCTAAGTCCTTCGGGCTCCACTTAGGTCAGGGCCAGAAGTCCCTATT-CCCCC--TCAGAGA-----------------------------CTCGAACTCTGCAAGGAATAAGAGATT---------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      14165 178 -    383796 CATCCTTGGGC--CCCGTGACTTTTGCTCTCAGGCCTTCTTCTCTGCCTCACACACAATGTGTGTGGTGCTCTGATTCCAGCTCTTCTAAGTCCCTCAGCCTCTACTTAGGTCAGGGCCAGAAGTCCCTATT-CCCCC--TCAGGGA-----------------------------CTCGAACTTTGCAAGGAATAAGAGATTATCCCAGGT
i aotNan1.NW_018496904v1   I 6 I 124
s otoGar3.GL873550         17267700 151 -  18854210 ------------------TAGTTTTTCTCTCAGGCCTTGTTCTCTGCCCCACTC---ATTTGTTTGGAAGTCTGATTCAAGTCCTTCTG-GTCACTCAGCCTCCACTCAGGTCAGGACC--------CTGTT-CTCCT-CTTTGGAG-----------------------------ACAGGAAATTTCAAGGAACAGGAGATCATCCCAGAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57999013 197 -  94987271 CAGCCCTTTGTAAGCCATGCCCTTT---CTCAGGCCATGTTCTCAGCC-CACACCCAACCTCTTTGGAGTCTTGACTCCAATGATGCTAAGTCTCTCAGCCTTCACCCAG-TCAAGACC-----TTTCTCCT-TTCTT-CCTTGGGAGTCCCGAAGTCCATCTTGTCATCCTATGTCTAGGGTTTCCCAAGGGGT---CGATTATTCCAGAT
i mm10.chr17               C 0 C 0
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=379264.000000
s hg38.chr6_GL000254v2_alt  1288079 81 +   4827813 GCCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCCCCATCCCAGGTGTCCTGTCCATTCTCAAGATAGCC-----ACATG
s panTro5.chr6             30158939 81 + 175400573 GCCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCTCTTCCCCATCCCGGGTGTCCTGTCAATTCTCAAGATGGCC-----ACATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30389561 81 + 173848474 GCCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCTCTTCCCCATCCCGGGTGTCCTGTCAATTCTCAAGATGGCC-----ACATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      43692 81 +   2037526 GCCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCCCTTCCCCATCCCAGGTGTCCTGTCCATTCTCAAGATAGCC-----ACATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74724340 81 + 122973662 GCCTGTGTCCAGGCTGCTGTCTGGGTTCTGTGCTCTCTTCCCCATCCCGGGTGTCCTGTCCATTCTCAAGATGGCC-----ACATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30546462 81 + 172585720 GCCTGTGTCCAAGCTGGTATCTGGGTCGTGTGCTCCCTTCCCCACCCCAGGTGTCCTGTCCATTCTCAGGAGGGCC-----ACATG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     191943 81 -    863181 GCCTGTGTCCAGGCTGGTGTCTTGGTTCTGTGCTCCCTTCCCCACCCCAGGTGTCCTGTTCATTCTCAGGATGGTC-----GCACG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29364531 81 -  71996105 GCCTGTGTCCAGGATGGTGTCTGGGTTCTGTGCTCCCTTCCCCACCCCAGGTGTCCTGCACATTCTCAAGATGGCC-----ACATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     191473 81 +    273075 GCCTGTGTCCAGGCTGGTGTCTTGGTTCTGTGCTCCCTTCCCCACCCCAGGTGTCCTGTTCATTCTCAGGATGGTC-----GCACG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      43674 81 -   1829203 GCCTGTGTCCAGGATGGTGTCTGGGTTCTGTGCTCCCTTCCCCACCCCAGGTGTCTTGTCCATTCTCAAGATGGCC-----ACATG
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     523759 38 -   1771730 -------------------------------------------ATCCCAGGTGTCCTGTCCATTCTCAGGATGGTC-----ACATG
i cebCap1.NW_016107755v1   C 0 I 82
s otoGar3.GL873550         17267851 79 -  18854210 -CCTCAGTCCAGGCTGGTGTCTGGGTTTTGCACTCGCTTCCACACCCCAGTTGTCCTGTCCATTCTTAGGAT-GTC-----ACATG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57999210 75 -  94987271 GCCTGAATCTAGAATACTGTATG------GTGCTTAAATCC----CTCAACTACCCATTCAATTTCCAAGATGGTCCATAAACAT-
i mm10.chr17               C 0 C 0
e aotNan1.NW_018496904v1      14343 124 -    383796 I
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=366310.000000
s hg38.chr6_GL000254v2_alt  1288160 86 +   4827813 TGTGCTGGAGGAGTGTCCCATGACAGATGCAAAATGCCTGAATGATCTGACTCTTCCTGACAGACG--CCCCCAAAACGCATATGACT
s panTro5.chr6             30159020 86 + 175400573 CGTGCTGGTGGAGTGTCCCATGACAGATGCAAAATGCCTGAATTTTCTGACTCTTCTCGTCAGACC--CCCCCAAGACACATATGACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30389642 86 + 173848474 CGTGCTGGTGGAGTGTCCCATGACAGATGCAAAATGCCTGAATTTTCTGACTCTTCTCGTCAGACC--CCCCCAAGACACATATGACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      43773 86 +   2037526 TGTGCTGGAGGAGTGTCCCATGACAGATGCAAAATGCCTGAATGTTCTGACTCTTCCCGACAGACG--CCCCCAAGACGCATATGACT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74724421 86 + 122973662 CGTGCTGGTGGAGTGTCCCATGACAGATGCAAAATGCCTGAATTTTCTGACTCTTCCCGTCAGACC--CCCCCAAGACACATATGACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30546543 88 + 172585720 CGTGCTGCTGGAGTGTCCCATAAGAGATGCAAAGTGCCTGAATTTTCTGACTCTTCACGTCAGACTCACCCCCAAGACACATGTGACC
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     192024 86 -    863181 GGTGCTGCTGGCGTGTCCCATGAGCGGTCCAAAGTGTCCGAATTTTCTGACACTTCCCTTCAGACT--CCCCCAAGACACACGTGACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29364612 86 -  71996105 GGTGCTGCTGGGGTGTCCCATGAGAGATGCAAAGTGCCTGAGTTTTCTGACTCTTCCTTTCAGATC--CCCCCAAGACACACGTGACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     191554 86 +    273075 GGTGCTGCTGGCGTGTCCCATGAGCGGTCCAAAGTGTCCGAATTTTCTGACACTTCCCTTCAGAAT--CCCCCAAGACACACGTGACC
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      43755 86 -   1829203 CGTGCTGGTGGAGTGTCCCATGACAGATGCAAAATGCCTGAATTTTCTGACTCTTCCCATCAGACC--CCCCCAAGACACATGTGACC
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550         17267930 86 -  18854210 AGCGCTGCTGGAGGGTCCCATGAGGGATGCAAAGTGTCTAAGTTTTCTGACTCTTCCCCTCAGATC--CCCCAAAGACTCATGTGACC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57999285 79 -  94987271 --TGCTTCA-----GTTCAGGGAAGAATTCAAGATTCCTGAATTGTTCAACTCTTTCCCTCAGATC--CTCCCAAGGCACATGTGACC
i mm10.chr17               C 0 C 0
e aotNan1.NW_018496904v1      14343 124 -    383796 I
e cebCap1.NW_016107755v1     523797 82 -   1771730 I
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=69668.000000
s hg38.chr6_GL000254v2_alt  1288246 13 +   4827813 CACCACGCTGTCT
s panTro5.chr6             30159106 13 + 175400573 CACCACCCCATCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30389728 13 + 173848474 CACCACCCCATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      43859 13 +   2037526 CACCACGCTGTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74724507 13 + 122973662 CACCACCCCATCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30546631 13 + 172585720 CACGATTCCATCT
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     192110 13 -    863181 CACCACCCCATCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29364698 13 -  71996105 CACCACCCCGTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     191640 13 +    273075 CACCACCCCATCT
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      43841 13 -   1829203 CACCACCCCGTCT
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     523879 13 -   1771730 CACCACCCTATCT
i cebCap1.NW_016107755v1   I 82 C 0
s otoGar3.GL873550         17268016 13 -  18854210 CACCACCCCACCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57999364 13 -  94987271 CATCACCCCAGAC
i mm10.chr17               C 0 C 0
e aotNan1.NW_018496904v1      14343 124 -    383796 I
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=385643.000000
s hg38.chr6_GL000254v2_alt  1288259 51 +   4827813 CTGACCATGAAGCCACCCTGAGGTGCTGGGCCCTGAGCTTCTACCCTGCGG
s panTro5.chr6             30159119 51 + 175400573 CTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30389741 51 + 173848474 CTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      43872 51 +   2037526 CTGACCATGAGGCCATCCTGAGGTGCTGGGCCCTGAGCTTCTACCCTGCGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74724520 51 + 122973662 CTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTAGGCTTCTACCCTGCGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30546644 51 + 172585720 CTGACTATAAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGTGG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     192123 51 -    863181 CTGACAGTGAGGCCACCTTGAGGTGCTGGACCTTGGGCATCTACCCTGCAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29364711 51 -  71996105 CTGAACACGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTGTACCCTGCGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     191653 51 +    273075 CTGACAGTGAGGCCACCTTGAGGTGCTGGACCTTGGGCATCTACCCTGCAG
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      43854 51 -   1829203 CTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTATCCTGCGG
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     523892 51 -   1771730 CTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      14467 51 -    383796 CTGACAATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGG
i aotNan1.NW_018496904v1   I 124 M 155
s otoGar3.GL873550         17268029 51 -  18854210 CTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGAGTTTCTACCCTGCGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57999377 51 -  94987271 CTGAAGGTGAAGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCTA
i mm10.chr17               C 0 C 0
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=457977.000000
s hg38.chr6_GL000254v2_alt  1288310 72 +   4827813 AGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACGGAGCTCGTGGAGACCAGGCCTG
s panTro5.chr6             30159170 72 + 175400573 TGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACGGAGCTCGTGGAGACCAGGCCCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30389792 72 + 173848474 AGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACGGAGCTCGTGGAGACCAGGCCCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      43923 72 +   2037526 AGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACGGAGCTCGTGGAGACCAGGCCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74724571 72 + 122973662 AGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACGGAGCTTGTGGAGACCAGGCCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30546695 72 + 172585720 AGATCACACTGACCTGGCAGTGGGATGGGGAGGGCCAGACTCAGGACATGGAGCTTGTAGAGACCAGGCCCG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     192174 72 -    863181 AGATCACACGGACTTGGCAGCGGGATGGGGAGGACGAGACCCAGGACACGGAACTTGTGGAGACTAGGCCTG
i cerAty1.NW_012002535v1   C 0 I 492
s chlSab2.chr17            29364762 72 -  71996105 AGATCACACTGACCTGGCAGTGGGACGGGGAGGACCAGACCCAGGACATGGAGCTTGGGGAGACCAGGCCCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     191704 72 +    273075 AGATCACACGGACTTGGCAGCGGGATGGGGAGGACGAGACCCAGGACACGGAACTTGTGGAGACTAGGCCTG
i manLeu1.NW_012101121v1   C 0 I 493
s colAng1.NW_012115577v1      43905 72 -   1829203 AGATCACACTGACCTGGCAGCGGGATGGAGAGGACCAAACTCAGGACACGGAGCTCGTGGAGACCAGGCCTA
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     523943 72 -   1771730 AGATCACGCTGACCTGGCAGAGGGATGGGGAGGAGCAGACCCAGGACACGGAGCTTGTGGAGACCAGGCCCG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         17268080 72 -  18854210 AGATCACACTGACCTGGCAGCGGGATGGGGAAGACCAGACCCAGGACATGGAGCTTATAGAGACCAGGCCTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57999428 72 -  94987271 ACATCATCCTGACCTGGCAGTGGGATGAGGAAGACCTGACTCAGGACATGGACCTCATTGAGACCAGACCTG
i mm10.chr17               C 0 C 0
e aotNan1.NW_018496904v1      14518 155 -    383796 M
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=483099.000000
s hg38.chr6_GL000254v2_alt  1288382 74 +   4827813 CAGGGGATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGACAGGAGCAGAGATACACCTGCCAT
s panTro5.chr6             30159242 74 + 175400573 CAGGGGATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTACCTTCTGGAGAGGAGCAGAGATACACCTGCCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30389864 74 + 173848474 CAGGGGATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTACCTTCTGGAGAGGAGCAGAGATACACCTGCCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      43995 74 +   2037526 CAGGGGATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGACAGGAGCAGAGATACACCTGCCAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74724643 74 + 122973662 CAGGGGATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAAAGGAGCAGAGATACACATGCCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30546767 73 + 172585720 CAGGGAATGGAACCTTCCAGAAGTGGGCAGCTGTGGT-GTGCCTTCTGGAGAGGAACAGAGATATACGTGCCAT
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     192738 74 -    863181 CAGGGGATGGAACTTTCCAGAAGTGGGCAGCTGTGGTGGTGCGTTCTGGAGAGGAGCAGAGATACACATGCTAT
i cerAty1.NW_012002535v1   I 492 C 0
s chlSab2.chr17            29364834 74 -  71996105 CAGGGGATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATTCACATGCCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     192269 74 +    273075 CAGGGGATGGAAGTTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACATGCTAT
i manLeu1.NW_012101121v1   I 493 C 0
s colAng1.NW_012115577v1      43977 74 -   1829203 CAGGGGATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAAAGGAGCAGAGATACACCTGTCAT
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     524015 74 -   1771730 CAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCTTTCTGGGGAGGAGCAGCGATACACGTGCCAT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         17268152 74 -  18854210 CAGGGGATCGAACCTTCCAAAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCACAGATACACGTGCCAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57999500 74 -  94987271 CAGGGGATGGGACCTTCCAGAAGTGGGCATCTGTGGTGGTACCTTCTGGAGAGGAACAGAGATACACATGTCAT
i mm10.chr17               C 0 C 0
e aotNan1.NW_018496904v1      14518 155 -    383796 M
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=375080.000000
s hg38.chr6_GL000254v2_alt  1288456 61 +   4827813 GTGCAGCATGAGGGTTTGCCCAAGCCCCTCACCCTGAGATGGGGTAAGGAG------GGAGAC-------------------GGG-G
s panTro5.chr6             30159316 61 + 175400573 GTGCAGCATGAGGGTCTGCCCAAGCCCCTCACCCTGAGATGGGGTAAGGAG------GGAGAT-------------------GGG-G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30389938 61 + 173848474 GTGCAGCATGAGGGTCTTCCCAAGCCCCTCACCCTGAGATGGGGTAAGGAG------GGAGAT-------------------GGG-G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      44069 61 +   2037526 GTGCAGCATGAGGGTCTGCCCGAGCCCCTCACCCTGAGATGGGGTAAGGAG------GGAGAC-------------------AGG-G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74724717 61 + 122973662 GTGCAGCATGAGGGTCTGCCCGAGCCCCTCACCCTGAGATGGGGTAAGGAG------GGAGAT-------------------GGG-G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30546840 80 + 172585720 GTACAGCATGAAGCATTGCCCAAGCCCCTCACCCTGAGATGTAGTAAGGCA------GGAGATGAGCCTGGAAGGGGAGAGGGGG-G
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     192812 60 -    863181 GTGCAGCACCAGGGGCTTCCCGAGCCCCTCACCCTGAGATGGGGTAAGGAG------GCAGAC--------------------GG-G
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29364908 61 -  71996105 GTGCAGCATGAGGGTCTGCCCAAGCCCCTCACCCTGAGATGGGGTAAGGAG------GGAGAT--------------------GGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     192343 60 +    273075 GTGCAGCACCAGGGGCTTCCCGAGCCCCTCACCCTGAGATGGGGTAAGGAG------GCAGAC--------------------GG-G
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      44051 61 -   1829203 GTGCAGCATGAGGGTCTGCGTGAGCCCCTCACCCTGAGATGGGGTAAAGAG------GGAGAT-------------------AGG-G
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     524089 61 -   1771730 GTGCAGCACGAGGGGCTGCCGGAGCCCTTCACCCTGAGATGGGGTAAGGAG------TGAGAT-------------------GGG-G
i cebCap1.NW_016107755v1   C 0 I 16
s aotNan1.NW_018496904v1      14673 61 -    383796 GTGCAGCACGAGGGGCTGCCAGAGCCTCTCACCCTGAGATGGGGTAAGGAG------TGAGAT-------------------GGG-G
i aotNan1.NW_018496904v1   M 155 I 86
s otoGar3.GL873550         17268226 61 -  18854210 GTGCAGCATGAAGGACTGCTGGAGCCCCTCACCCTGAGATGGGGTAAGAAG------GGATGT-------------------GGG-G
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57999574 67 -  94987271 GTGCAACATGAGGGGCTAACCCAGCCCCTTGTTCTAAAATGGGGTAAGGAGTGGTGTGGACAC-------------------AGA-G
i mm10.chr17               C 0 C 0
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=173230.000000
s hg38.chr6_GL000254v2_alt  1288517 38 +   4827813 GTGTCATGTCTTTT---AGGGAAAGCAGGAGCCTCTCTG---AC
s panTro5.chr6             30159377 41 + 175400573 GTGTCATGTCTCTT---AGGGAAAGCAGGAACCTCTCTGGAGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30389999 41 + 173848474 GTGTCATGTCTCTT---AGGGAAAGCAGGAGCCTCTCTGGAGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      44130 38 +   2037526 GTGTCATGTCTTTT---AGGGAAAGCAGGAGCCTCTCTG---AC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74724778 41 + 122973662 GTGTCATGTCTCTT---AGGGAAAGCAGGAGCCTCTCTGGAGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30546920 38 + 172585720 CGGTCATGTCTCTT---AGGGAAAGCAGGAGCCTCTCTGGA---
i rheMac8.chr4             C 0 I 3
s cerAty1.NW_012002535v1     192872 38 -    863181 GTGTCATGTCTCTT---AGGGAAAGCAGGAGCCCCTTTAGC---
i cerAty1.NW_012002535v1   C 0 I 23
s chlSab2.chr17            29364969 38 -  71996105 GTATCATGTCTCTT---AGGGAAAGCAGGAGCCCCTCTGGA---
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012101121v1     192403 38 +    273075 GTGTCATGTCTCTT---AGGGAAAGCAGGAGCCCCTTTAGC---
i manLeu1.NW_012101121v1   C 0 I 23
s colAng1.NW_012115577v1      44112 38 -   1829203 GTGTTATGTCTCTT---AGGGAAAGCCAGAGCCTCTCTAGA---
i colAng1.NW_012115577v1   C 0 I 3
s cebCap1.NW_016107755v1     524166 44 -   1771730 AGGTCATGTCTTTTCTCAGGAGAAGTAGGAGCCCTTCTGAAGCC
i cebCap1.NW_016107755v1   I 16 C 0
s otoGar3.GL873550         17268287 44 -  18854210 GTGTCATGTCTTTTGTCAGGGAAAGCAGGGGCCTTTCTGGAGTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               57999641 36 -  94987271 -----ATGATCATT---TGGGAAAGTGGAAGCCCTTCTGGAGAC
i mm10.chr17               C 0 C 0
e aotNan1.NW_018496904v1      14734 86 -    383796 I
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=27005.000000
s hg38.chr6_GL000254v2_alt  1288555 7 +   4827813 CTTTAGC
s panTro5.chr6             30159418 7 + 175400573 CTTTAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30390040 7 + 173848474 CTTTAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      44168 7 +   2037526 CTTTAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74724819 7 + 122973662 CTTTAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30546961 7 + 172585720 CTTCAGC
i rheMac8.chr4             I 3 C 0
s chlSab2.chr17            29365010 7 -  71996105 CTTTAGC
i chlSab2.chr17            I 3 C 0
s colAng1.NW_012115577v1      44153 7 -   1829203 CTTTAGC
i colAng1.NW_012115577v1   I 3 C 0
s cebCap1.NW_016107755v1     524210 7 -   1771730 ATTCAGC
i cebCap1.NW_016107755v1   C 0 I 20
s otoGar3.GL873550         17268331 7 -  18854210 CTTTAGC
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               57999677 7 -  94987271 CCTGAGA
i mm10.chr17               C 0 I 19
e aotNan1.NW_018496904v1      14734 86 -    383796 I
e manLeu1.NW_012101121v1     192441 23 +    273075 I
e cerAty1.NW_012002535v1     192910 23 -    863181 I
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=8177.000000
s hg38.chr6_GL000254v2_alt  1288562 4 +   4827813 AGGG
s panTro5.chr6             30159425 4 + 175400573 AGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30390047 4 + 173848474 AGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      44175 4 +   2037526 AGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74724826 4 + 122973662 AGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30546968 4 + 172585720 AGCA
i rheMac8.chr4             C 0 I 26
s chlSab2.chr17            29365017 4 -  71996105 AGGG
i chlSab2.chr17            C 0 I 19
s colAng1.NW_012115577v1      44160 4 -   1829203 AGGG
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     524237 4 -   1771730 GGGA
i cebCap1.NW_016107755v1   I 20 C 0
s aotNan1.NW_018496904v1      14820 4 -    383796 AGGA
i aotNan1.NW_018496904v1   I 86 C 0
s otoGar3.GL873550         17268340 2 -  18854210 AG--
i otoGar3.GL873550         I 2 I 18
s mm10.chr17               57999703 4 -  94987271 AGGG
i mm10.chr17               I 19 C 0
e manLeu1.NW_012101121v1     192441 23 +    273075 I
e cerAty1.NW_012002535v1     192910 23 -    863181 I
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=1275419.000000
s hg38.chr6_GL000254v2_alt  1288566 220 +   4827813 TCAGGGC---------CCCTCACCTTCCCCTCTTTTCCCAGAGCCGTCTTCCCAGCCCACCATCCCCATCGTGGGCATCATTGCTGGCCTGGTTCTCTTTGGAGCTGTGATCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAGGAAGAG-CTCAGGTGGG--GAAGGGG-TGAAGGGTG-GG-TCT-------------------------------------GAGATTTCTTGTCTCACTGAGGGTTCCAAGACCCAGGT--------------------------AGAAGTG
s panTro5.chr6             30159429 221 + 175400573 TCAGGGC---------CCCTCACCTTCCCCTCTTTTCCCAGAGCCGTCTTCCCAGCCCACCATCCCCATTGTGGGCATCATTGCTGGCCTGGTTCTCCTTGGAGCTGTGATCACTGGAGCTGTGGTCGCTGCCGTGATGTGGAGGAGGAAGAG-CTCAGGTGGA--GAAGGGG-TGAAGGGTG-GGGTCC-------------------------------------GAGATTTCTTGTCTCACTGAGGGTTCCAAGCCCCAGCT--------------------------AGAAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30390051 221 + 173848474 TCAGGGC---------CCCTCACCTTCCCCTCTTTTCCCAGAGCCGTCTTCCCAGCCCACCATCCCCATTGTGGGCATCATTGCTGGCCTGGTTCTCCTTGGAGCTGTGATCACTGGAGCTGTGGTCGCTGCCGTGATGTGGAGGAGGAAGAG-CTCAGGTGGA--GAAGGGG-TGAAGGGTG-GGGTCT-------------------------------------GAGATTTCTTGTCTCACTGAGGGTTCCAAGCCCCAGCT--------------------------AGAAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      44179 221 +   2037526 TCAGGGC---------CCCTCACCTT-CCCTCTTTTCCCAGAGCCATCTTCCCAGCCCACCATCCCCATCGTGGGCATCATTGCTGGCCTGGTTCTCTTTGGAGCTGTGATCGCTGGAGCTGTGGTCGCTGCTGTGAGGTGGAGGAGGAAGAG-CTCAGGTGGGGTGAAGGGG-TGAAGGGTG-GG-TCT-------------------------------------GAGATTTCTTGTCTCACTGAGGGTTCCAAGACCCAGGT--------------------------AGAAGTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74724830 221 + 122973662 TCAGGGC---------CCCTCACCTTCCCCTCTTTTCCCAGAGCCGTCTTCCCAGCCCACCATCCCCATCGTGGGCATCATTGCTGGCCTGGTTCTCCTTGGAGCTGTGATCACAGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAGGAAGAG-CTCAGGTAGG--GAAGGGG-TGAAGGGTG-GGGTCT-------------------------------------GAGATTTCTTGTCCCACTGGGGGTTCTAAGCCCCAGGT--------------------------AGAAGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30546998 221 + 172585720 TCAGGGA---------TCCTCACCTTCCCCTTTTTTCCCAAAGCCGTCTTCCCAGTCCACCATCCCCATCGTGGGCATCGTTGCTGGCCTGGTTCTCCTTGGAGCTGTAGTCACTGGAGCTGGGGTCGCTGCTGTGATGTGGAGGAAGAAGAG-CTCAAGTGGG--GAAGGGG-TGAGGAGTG-GGGTCT-------------------------------------GAGTTTTCTTGTCTCACTGGGGGTTCCTAGCCCCAGGT--------------------------AGAAGTG
i rheMac8.chr4             I 26 C 0
s cerAty1.NW_012002535v1     192933 222 -    863181 TCCAGGA---------CTCTTACCTTCACTTCCTTTCCCAGAGCGGTCTCCCCAACCGACCATCCCCATCATGGGCATCGTTGCTGGCCTGGTTGTCGGTGGAGCTGTGGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAGAG-CTCAGGTAAG--GAAAGGGTTTAGGAGTGCGGGTCT-------------------------------------GAGTTTTC-TGTCTCACTGGTGGTTTCAAGCCCCAAGT--------------------------AGAAGTG
i cerAty1.NW_012002535v1   I 23 C 0
s chlSab2.chr17            29365040 221 -  71996105 TTCAGAA---------CCCTCACATTCCCCTCCTTTCCCAGAGCTGTCTCTCCAGCCCACCATCCCCATCATGGGTATCATTGCTGGCCTGGTTATCCTTGCAGCTGTCATCACTGGAGCTGTGGTCGCTGCTGTGCTATGGAGGATGAAGAG-CTCAGGTGAG--GAAGGGG-TGACAGGTG-GGGTCT-------------------------------------GAGATTTCTTGTCTCACTGAGGGTTCCAAGCCCCAGGT--------------------------AGAAGTG
i chlSab2.chr17            I 19 C 0
s manLeu1.NW_012101121v1     192464 222 +    273075 TCCAGGA---------CTCTTACCTTCACTTCCTTTCCCAGAGCAGTCTCCCCAACCGACCATCCCCATCATGGGCATCGTTGCTGGCCTGGTTGTCCATGGAGCTGTGGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAGAG-CTCAGGTAAG--GAAAGGGTTTAGGAGTGCGGGTCT-------------------------------------GAGTTTTC-TGTCTCACTGGTGGTTTCAAGCCCCAAGT--------------------------AGAAGTG
i manLeu1.NW_012101121v1   I 23 C 0
s colAng1.NW_012115577v1      44164 222 -   1829203 -TCAGGACC-------CCCTCACCTTCCCCTCTTTTCCCAGAGCCGTCTTCCCAGTCCACCATCCCCATCGTGGGCATCATTGCTGGTGTGGTTCTCCTTGGAATTGTGGTCACTGGAGCTGTGATTGCTGCTGTGATATGGAGGAGGAAGAG-CTCAGGTGAG--GAAGGGG-TGAGGAGTG-GGGTCT-------------------------------------GAGATTTCTTGTCTTACTGAGAGTTTCAAGCCCTAGGT--------------------------AGAAGTG
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     524241 209 -   1771730 TCAGGGC---------CCCTCACCTTCCCCTCCTTTCCCAGAGCCATCTTCCCAGCCCACCGTCCCCATCGTGGGCATGGTTGCTGGCCTGGTTGTCCTTGGAGCTGTGGTCACTGGA------------GCTGTGATGTGGAGGAAGAAGAT-CTCAGGTTGG--GAAGGGG-TGAGGAGTG-GGGTCT-------------------------------------GAGTTTTCTTGTCCTAGGGGGGGTTTTGAGCCCCAGGT--------------------------AGAAGTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      14824 222 -    383796 TCAGGGC---------CCCTCACTTTCCCCTCCTTTCTCAGAGTCGTCTTCCCAGCCCACCGTCCCTCTTGTGGGCATTGTTGCTGGCCTGGTTGTCCTTGGAGCTGTGGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAGATCCTCAGGTAGG--GAAGGAG-TGAGGAGTG-GGCTCT-------------------------------------GAGTTTTCTTGTCCTAGTGGGGGGTTTGAGCCCCAGGT--------------------------AGAAGTG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17268360 219 -  18854210 ATAAGGC---------CTCTCACCTTCATGTCCTTTTCCAGAGCCATCTTCCCTACCCAGCACCCCCATGGTGGGCATCATTGCTGGCCTGGTTCTCCTTGGAACTGTGCTCACCGGAGCTGTGGTTGCTGCTGTGATGTGGAGGAGGAAGAG-CTCAGGTAGG--GAAAGGG-GGAGTGGCA-GGGTCT-------------------------------------ACATTTTCTTGTCCCACTGGAGTTTC--AATTTCAGGT--------------------------AGCAGGG
i otoGar3.GL873550         I 18 C 0
s mm10.chr17               57999707 284 -  94987271 CCAGGGCTCACACCTTCTCTCTCTTTCCCTTCCCTTCCCAGACC---CTTCTAAGCACACCATTCCCATCATGGGAATCACTGTTGGCCTGCTTCTCTTTGGAGTTGTGTTTACTGGAGCTGTGGTTGCCATAGTGATGAGGAAGAGGAAAGG-------TAGG--AAATGGG-TTATATCTG-AGGTCTTTTTTGTTTGGTTTTGGttttggtttttttagagacagggtttctctatagccctggctgtcctggaactcacttttgtagaccaggctggcctcgaactcagaaatc
i mm10.chr17               C 0 C 0
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=139216.000000
s hg38.chr6_GL000254v2_alt  1288786 37 +   4827813 ----TGCC-CTGCCTCGTTACTGG---GAAG--------CACCACCCACAATT--------------------------
s panTro5.chr6             30159650 37 + 175400573 ----TGCC-CTGTCTCATTACTGG---GAAG--------CACCATCCACAATC--------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30390272 37 + 173848474 ----TGCC-CTGTCTCATTACTGG---GAAG--------CACCATCCACAATC--------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      44400 36 +   2037526 ----TGCC-CTGCCTCGTTACTGG---GAAG--------CA-CATCCACAATT--------------------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74725051 37 + 122973662 ----TGCC-CTGCCTCGTTACTGG---GAAG--------CACCATCCACACTC--------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30547219 30 + 172585720 ----TGCC-CTGCCTGGTTACTGG---GAAG---------------CACACTC--------------------------
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     193155 37 -    863181 ----TGCC-CTGCCTGGTTACTAG---AAAG--------CACTATCCACACTC--------------------------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29365261 36 -  71996105 ----TGCC-CT-CCCAGTTACTGG---GAAG--------CACCATCCACACTC--------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     192686 37 +    273075 ----TGCC-CTGCCTGGTTACTAG---AAAG--------CACTATCCACACTC--------------------------
i manLeu1.NW_012101121v1   C 0 C 0
s colAng1.NW_012115577v1      44386 37 -   1829203 ----TACC-CTGCCCGGTTCCTGG---GAAG--------CGCCATCCACACTC--------------------------
i colAng1.NW_012115577v1   C 0 I 4356
s cebCap1.NW_016107755v1     524450 37 -   1771730 ----TGCC-CTGTCTTCTTACTGG---GAAG--------CACCACCCACACAC--------------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      15046 37 -    383796 ----TGCC-TTGTCTCCTTACTGG---GAAG--------CACCATCCACACAC--------------------------
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               57999991 79 -  94987271 cgcctgcctctgcctctatgatggatcaaaggtgtgtgccaccacacccagTGAGTTGGTATAAGATATATACATATAT
i mm10.chr17               C 0 C 0
e otoGar3.GL873550         17268579  0 -  18854210 C
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=1454676.000000
s hg38.chr6_GL000254v2_alt  1288823 352 +   4827813 ATGGGCCTACCCAGCCTGGGC-C-CTGTGTGCCAGCACTTACTCTTTTGTAAAGCACCTGTTAAAATGAAGGACAGATTTATCACCTTGATTACAGCGGTGAT-GGGACCTGATC-CCAGCAGTCACAAGTCA-CAGGGGAAGGTCC---CTGAGGAC---CTTCAGGAGGGCGGTTGGTCCAGGACCCACACCTGCTTTCTTCATGTTTCCTGATCCCGCCCTGGGTCTGCAGTCACACATTTCTGGAAACTTCTCTGAGGTCCAAGACTTGGAGGT-TCCTCTAGGACCTTAAGGCCCTGACTCCTTTCTGGTATCTCACAGGACATTTTCTTCCCACAGATAGAAAAGGAGGGAGCTACTC
s panTro5.chr6             30159687 355 + 175400573 ATGGGCCGACCCAGCCTGGGC-C-CTGTGTGCCAGCACTTACTCTTTTGTAAAGCACCTGTTAAAATGAAGGACAGATTTATCACCTTGATTACGGCGGTGAT-GGGACCTGATC-CCAGCAGTCACAAGTCA-CAGGGGAAGGTCC---CTGAGGACAGACCTCAGGAGGGCTATTGGTCCAGGACCCACACCTGCTTTCTTCATGTTTCCTGATCCCGCCCTGGGTCTGCAGTCACACATTTCTGGAAACTTCTCTGAGATCCAAGACTAGGAGGT-TCCTCTAGGACCTTAAGGCCCTGGCTCCTTTCTGGTATCTCACAGGACATTTTCTTCCCACAGATAGAAAAGGAGGGAGCTACAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30390309 355 + 173848474 ATGGGCCGACCCAGCCTGGGC-C-CTGTGTGCCAGCACTTACTCTTTTGTAAAGCACCTGTTAAAATGAAGGACAGATTTATCACCTTGATTACGGCGGTGAT-GGGACCTGATC-CCAGCAGTCACAAGTCA-CAGGGGAAGGTCC---CTGAGGACAGACCTCAGGAGGGCTATTGGTCCAGGACCCACACCTGCTTTCTTCATGTTTCCTGATCCCGCCCTGGGTCTGCAGTCACACATTTCTGGAAACTTCTCTGAGATCCAAGACTAGGAGGT-TCCTCTAGGACCTTAAGGCCCTGGCTCCTTTCTGGTATCTCACAGGACATTTTCTTCCCACAGATAGAAAAGGAGGGAGCTACAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      44436 351 +   2037526 ATGGGCCTACCCAGCCTGGGC-C-CTGTGTGCCAGCACTTACTCTTTTGTAAAGCACCTGTTAAAATGAAGAACAGATTTATCACCTTGATTACGGCGGTGAT-GGGACCTGATC-CCAGCAGTCACAAGTCA-CAGGGGAAGGTCC---CTGAGGAC---CTTCAGGAGGGCGGTTGGTCCAGGAGCCACACCTGCTTTCTTCATGTTTCCTGATCCTGCCCTGGGTCTGCAGTCACACATTTCTGGAAACTTCTCTGGGGTCTAAGACTAGGAGGT-TCCTCTAGGACCTTAAGGCCCTGGCTCCTTTCTGGTATCTCACAGGATATTTTCTT-CCACAGATAGAAAAGGAGGGAGCTACTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74725088 354 + 122973662 ATGGGCCTACCCAGCCTGGGC-C-CTGTGTGCCAGCACCTACTCTTTTGTAAAGCACCTGTTAAAATGAAGGACAGATTTATCACCTTGATGACTGTGGCGAT-GAGACCTGAT--CCAGCAGTCACAAGTCA-CAGGGGAAGGTCC---CTGAGGACAGACCTCAGGAGGGCAGTTGGTCCAGGACCCACACCAGCTTTCTTCGTGTTTCCTGATCCCGCCCTGGGTCTGCAGTCACACATTTCTGGAAACTTCTCTGGGGTCCAAGACTAGGAGGT-TCCTCTAGGACCTTAAGGCCCTGGCTCCTTTCTGGTATCTCACAGGACATTTTCTTCCCATAGATAGAAAAGGAGGGAGCTACTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30547249 359 + 172585720 ATGGGCCAACCCAGCCTGGGC-C-TT-TGTGCCAGCACTTACTGTTTTGTAAAGCACCTGTGACAAGGAAGGACAGATTTATCACCTCGATGATTGTGATGATGGGGACCTGATC-CCAGCAGTCACAAGTCG-CAGGGGAAGGTCCCTGCTGAGGACAGACCTCAGGAGGGCAGTTGGTCCAGGACCCACACCTGCTTTCCTCATGTTTCCTGATCCTGTCCTGGATCTGCAGTTACACTTTTCTGGAAAATTCTCTGGGATCAAAGACTAGGGGGTATGCTATAGGGCCTTATGGCCCTGACTCCCTTTTGGCCTCTCACAGGACATTTTCTTCCCACAGATAGAAACAGAGTGATCTACTC
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     193192 356 -    863181 ATGGGCCGACCCAGCCTGGGC-C-TTGTGTGCCAGCACTTACTCCTTTGTAAAGCACCTGTGACAATGAAGGACAGATTTATCACGTTGATGATTGTGGTGAT-GGGACCTGATC-CCAGCAGTCACAGGT---CAGGGGAAGGTCCCTGCTGAGGACAGACCTTAGGAGGGCAGTTGTTCTAGGACGCACATCTGCTTTCCTTCTTTTTCCTGATCCTGCCCTGGGTCTGCAGTCACACATTTCTGGAGACTTCTCTGGGGTCCAAGACTAGGAGGT-TCCTCTAGGATCTCATGGCCCTCCCACCGTTCTGGTCTCTCACAGGTCGCTTTCTTCCCACAGATAGAAAATGAGGGAGCTACTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29365297 357 -  71996105 ATGGGCCAACCCAGCCTGGGC-C-CTGTGTGCCAGCACCTACTCTTTTGTAAAGCACCTGTGACAGTGAAGGACAGATTTATCACCTTGATGATTGTAGTGATGGGGACCTGATC-CCAGCAGTCACAGGT---CAGGGGAAGGTCGCTGCTGAGGACAGACCTTAGGAGGGCAGTTGGTCCCAGACCTACATCTGCTTTCCTTGTTTTTCCTGATCCTGCCCGTGGTCTGCAGTCACACGTTTCTGGAAACTTCTCGAGGGTCCTAGACTAGGGGAT-TCCTCTAGGACCTCATGGCCCTGCCACCTTTCTGGCCTCTCACAGGACATTTTCTTCCCAAAGACAGAAAAGGAGGGAGCTACTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     192723 357 +    273075 ATGGGCCGACCCAGCCTGGGC-C-TTGTGTGCCAGCACCTACTCCTTTGTAAAGCACCTGTGACAATGAAGGACAGATTTATCACATTGATGATTGTGGTGATGGGGACCTGATC-CCAGCAGTCACAGGT---CAGGGAAAGGTCCCTGCTGAGGACAGACCTTAGGAGGGCAGTTGGTCTAGGATGCACATCTGCTTTCCTTCTTTTTCCTGATCCTGCCCTGGGTCTGCAGTCACACATTTCTGGAGACTTCTCTGGGGTCCAAGACTAGGAGGT-TCCTCTAGGATCTCATGGCCCTCCCACCGTTCTGGTCTCTCACAGGTCGTTTTCTTCCCACAGATAGAAAATGAGGGAGCTACTC
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     524487 354 -   1771730 ATGGGCCTACCCAGCCGGGTA-C-CTGTGTGACAACACTTACTCATTTGTAAAGCA------AAAATGAATAACAGATTCTTCACTTCGAAGACTGTGGTGGTGGGGATCTGATTGCCAACAGTCACAAATCA-CAGGGGAAGGTCCCTGCTGAGGACAGACCTTAGGAGAACAATTGGTCCAGGACCCACACGTGCTTTCTTCTTATTTTCTGATCCTGCCCTGGATCTGCGGTTATATATTTCTGAGAACTTCTCTGGGATCAAAGACTAGAGGGT-TGCTCTAGGGCCTTATAGCCCTGCCTCCTTTTCGGCCTCTCACAGGACATTTTCTTCCCACAGATAGAAACAGAGAGAGCTACTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      15083 355 -    383796 ATGGGCCTACCCAGCCTGCTACC-CTGTGTGACAACACTTACTCATTTGTAAAATG------AAAATGAATGACAGATTCTTCACTTTGAAGACTGTGGTGGTGGGGACCTGATTGCCAACAGTCACAAATCA-CAGAGGAAGGTCCTTCCTGAGGACAGACCTTAAGAGGACAGTTGGTCCAGGACCCACACCTGCTTTCTTCTTATTTTCTGATCCTGCCCTGGATCTGCAGTTATACATTTCTGGAAACTTCCCTGGGATCTAAGACTAGGGGGT-TGCTCTAGGGCCTTATGGCCCTGCCTCCTTTCTGGCCTCTCACAGGACATTTTCTTCCCACAGATAGAAACAGAGAGAGCTGCTC
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58000070 305 -  94987271 GTGTGCTTATCCAATCTAGGA-TATTGTGTTCTAACTC-------TTTCTAAAGCACATTTGGAAACAAGTGACAAATATCTCACATT------------------GACATGA---CAAACCATGACATGCCAGTTGGGACAGGTC----TCCAGGCTGGAACTTGGGAGCTTTTCTG---------TAATACTTCCCTTC-TCTTATTTTCTGATTCTGCTCTAGGTTTTCAGATA-ATAATTCTAAAAACATTCCTGAAGGGCTGAACCCAGGAAT-TCTGCTAGGATTTC---------CCATCCTGCCGCTCTCCCAT----CTTTTTATTCCCACAGATGGAAAAGGA-TGAGTTACTC
i mm10.chr17               C 0 I 5960
e otoGar3.GL873550         17268579   0 -  18854210 C
e colAng1.NW_012115577v1      44423 4356 -   1829203 I
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=146661.000000
s hg38.chr6_GL000254v2_alt  1289175 32 +   4827813 TCAGGCTGCAAGTAAGT-ATGAAGGAGGCTGAT
s panTro5.chr6             30160042 32 + 175400573 TCAGGCTGCAAGTAAGT-ATGAAGGAGGCTGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30390664 32 + 173848474 TCAGGCTGCAAGTAAGT-ATGAAGGAGGCTGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      44787 32 +   2037526 TCAGGCTGCAAGTAAGT-ATGAAGGAGGCTGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74725442 32 + 122973662 TCAGGCTGTAAGTAAGT-ATGAAGGAGGCTGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30547608 32 + 172585720 TCAAGCTGCAAGTAAGT-ATGAAGTGGGCTGAT
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     193548 33 -    863181 TCAGGCTGCAAGTAAGTGATGAAGGAGGCTGAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29365654 32 -  71996105 TCAGGCTGCAAGTAAGT-ATGAAGGGGGCTGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     193080 33 +    273075 TCAGGCTGCAAGTAAGTGATGAAGGAGGCTGAT
i manLeu1.NW_012101121v1   C 0 T 44666
s cebCap1.NW_016107755v1     524841 32 -   1771730 TCAGGCTGCAAGTAAGT-ATGAAGGGGGCTGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      15438 32 -    383796 TCAGACTGCAAGTAAGT-ATGAAGGGGGCTGAA
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58000375 5960 -  94987271 I
e otoGar3.GL873550         17268579  0 -  18854210 C
e colAng1.NW_012115577v1      44423 4356 -   1829203 I
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=184083.000000
s hg38.chr6_GL000254v2_alt  1289207 62 +   4827813 GCCTGAGGTCCTTGGGATATTGTGTTTGGGAGCCCATGGGGGAGCTCACCCACCCCACAATT
s panTro5.chr6             30160074 62 + 175400573 GCCTGAGGTCCTTGGGATATTGTGTTTGGGAGCCCATGGGGGAGCTCACCCACCCCACAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30390696 62 + 173848474 GCCTGAGGTCCTTGGGATATTGTGTTTGGGAGCCCATGGGGGAGCTCACCCACCCCACAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      44819 62 +   2037526 GCCTGAGGTCCTTGGGATATTGTGTTTGGGAGCCCGTGGGGGAGCTCACCCACCCCACAATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74725474 62 + 122973662 CCCTGAGATCCTTGGGAAATTGTGTTTGGGAGCCCATGGGGGAGCTCACCCAGCCCACAGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30547640 62 + 172585720 CCCTGAGATCCTTGGGATATTGTGGTCGGGATCCAGTGGGAGAGCTTACCCAACCCCAAACT
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     193581  1 -    863181 C-------------------------------------------------------------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29365686 62 -  71996105 TCCTGAAATCCTTGGGATATTGTGGTCGGGAGACCATGGGGGAGCTCACCCAGCCCACAGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     148447 62 +    273075 CACTGAGATCCTTGGGATGTTGTGGTTGGGAGCCCATGGGGGAGCTCACCCAGCCCACAGTT
i manLeu1.NW_012101121v1   T 44666 I 44604
s cebCap1.NW_016107755v1     524873 62 -   1771730 CCCTGAGATCATTGGGATATTGTGGTTGGGAGCCCAAGGGGAAGCTGGCCCAGCCCACAGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      15470 62 -    383796 CCCTGAGATCATTGGGATATTGTGATTGGGAGCCCAAGGGGAAGCTGTCCCAGCCCACAGTT
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58000375 5960 -  94987271 I
e otoGar3.GL873550         17268579  0 -  18854210 C
e colAng1.NW_012115577v1      44423 4356 -   1829203 I
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=783966.000000
s hg38.chr6_GL000254v2_alt  1289269 202 +   4827813 CCTCCTCTAGCCACATCTTCTGTGGGATCTGACCAGGTTCTGTTTTTGTTCTACCCCAGGCAGTGACAGTGCCCAGGGCTCTGATGTGTCTCTCACAGCTTGTAAAGGTGAGAGCCTGGAG-----GGCCTGATGTGTGTTGGGTGTTGGGCGGAACAGTGG--ACACAGCTGTGCTATGGGGTTTCTTTCCATTGGATGTATTGAGCA
s panTro5.chr6             30160136 202 + 175400573 CCTCCTCTAGCCATATCTTCTGTGGGATCTGACCAGGTTCTGTTTTTGTTCTACCCCAGGCAGTGACAGTGCCCAGGGCTCTGATGTGTCTCTCACAGCTTGTAAAGGTGAGAGCTTGGAG-----GGCCTGATGTGTGTTGGGTGTTGGGCAGAACAGTGG--ACACAGCTGTGCTATGGGGTTTCTTTGCATTGGATGTATTGAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30390758 202 + 173848474 CCTCCTCTAGCCACATCTTCTGTGGGATCTGACCAGGTTCTGTTTTTGTTCTACCCCAGGCAGTGACAGTGCCCAGGGCTCTGATGTGTCTCTCACAGCTTGTAAAGGTGAGAGCTTGGAG-----GGCCTGATGTGTGTTGGGTGTTGGGTGGAACAGTGG--ACACAGCTGTGCTATGGGGTTTCTTTGCATTGGATGTATTGAGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      44881 202 +   2037526 CCTCCTCTAGCCACATCTTCTGTGGGATCTGACCAGGTTCTGTTTTTGTCCTACCCCAGGCAGTGACAGTGCCCAGGGCTCTGATGTGTCTCTCACAGCTTGTAAAGGTGAGAGCCTGGAG-----GGCCTGATGTGTGTTGGGTGTTGGGCGGAACAGTGG--ACCCAGCTGTGCTACGGGGTTTCTTTGCATTGGATGTATTGAGCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74725536 202 + 122973662 CCTCCTCTAGCCACATCTCCTGTGGGATCTGACCAGGTCCTGTTTTTGTTCTACTCCAGGCAGTGACAGTGCCCAGGGCTCTGATGTGTCTCTCACGGCTTGTAAAGGTGAGACCCTGGAG-----GGCTTGATGTGTGTTGGGTTTTGGAGGGAACAGTGG--ACACAGCTGTGCTATGGGGTTTCTTTGCACTGGATGTATTGAGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30547702 202 + 172585720 TCTCCTCTAGCCAAATCTCCTCTGGGCTCTGACCAGGTCCTGTTTTTGTTCTACCACAGGCAGCAACTGTGCCCAGCATTCTGATGTGTCTCTCACGGCTTGTAAAAATGAGACCCTGGGG-----GGCCTGATGTATGTGGGGTGTTCAGGGGAACAGTGG--ATGCAGCTGTGCTATGGGGTTTCTTCGAGTTGGATGTATTGAGCA
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     193582 201 -    863181 -CTCCTCTAGCCACATCTCCTGTGGGCTCTGACCAGGTTCTATTTTTGTTCTACCCCAGGCGGTGACAGTCCCCAGAGCTCTAATGTGTCTCTCATGGCTTATAAAGGTGAGACCCTGGGG-----AGGCTGGTGTGTGGGAGGTGTTGGGAGGAACAGTGG--GCACAGCTGTTCTATGGGTTTTCTTTGACTTGGATGTATTGAGCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29365748 202 -  71996105 CCAACTATAGCCACATCTCCTGTGGGATCTGACCAGTTTCTGTTTCTGTTCTACCCCAGGTAGCCAAAGTGCCCAGGGCTCTCATATGTCTCTCAAGGCTTATAAAGGTGAGACCTTGGGG-----GGCCTGATGTGTGTGGGGTGTTGGGTGTAACAGTGG--ACATAGCTGTGCTGTGGGGTTTCTTTGACTTGGATGTATTGAGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     193113 202 +    273075 CCTCCTCTAGCCACATCTCCTGTGGGCTCTGACCAGGTTCTATTTTTGTTCTACCCCAGGCGGTAACAGTGCCCAGAGCTCTAATGTGTCTCTCATGGCTTATAAAGGTAAGACCCTGGGG-----AGGCTGGTGTGTGGGAGGTGTTGGGAGGAACAGTGG--GCACAGCTGTTCTATGGGTTTTCTTTGACTTGGATGTATTGAGCA
i manLeu1.NW_012101121v1   I 44604 C 0
s cebCap1.NW_016107755v1     524935 209 -   1771730 CCTCCTCTATCTGCATCTCCTGTGGGCTCTGACCAGGTCCTGTTTGTGTTCTACCCCAGTCATTGACACTGCCCAGGGCTTTGGTGTGTCTCTCATTACTTATAAAGGTGACACTTGGGGGCAGGGGCCCTGATGTAAGTGGGGTATTGTGGGGAACAGAGGGAATGTGAGTGTGCTATGGGGTTTCTTTGACTTGGATGTCCTGAGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      15532 209 -    383796 CCTCCTCTAGCCGCGTCTCCTGTGGGCTCTGACCAGGTCCTGTTTGTATTCTACCCCAGTCATTGACACTGCCCAGAGCTTTGGTGTGTCTCTCATAACTTATAAAGGTGACACTTGAGGGCAGAAGCCCTGATGTAAGTGGAGTATTGTGGGGAACAGAGGGAATGCGAGTGTGCTATGGGGTTTCTTTGACTTGGATGTCCTGAGTA
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58000375 5960 -  94987271 I
e otoGar3.GL873550         17268579   0 -  18854210 C
e colAng1.NW_012115577v1      44423 4356 -   1829203 I
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=3581699.000000
s hg38.chr6_GL000254v2_alt  1289471 813 +   4827813 TGCGATGGGCTGTTTAAAGTGTGACCCCTCACTGTGACAGATACGAATTTGTTCATGAATA-TTTTTTTCTATAGTGTGAGACAGCTGCCTTGTGTGGGACTGAGAGGCAAGAGTTGTTCCTGCCCTTCCC-TTTGTGACTTGAAGAACC-CTGACTT-TGTTTCTGCAAAGGCACCTGCATGTGTCTGTGTTCGTGTAGGCATAATGTGAGGAGGTGGGGAGACCACCCCACCCCCATGTCCACCATGACCCTCTT-CCCACGCTGACCTGTGCTCCCTC--CCCAATCATCTTTCCTGTTCCAGAGAGGTGGGGCTGAGGTGTCTCCATCTCTGTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTCCTTCCCTAT-TAAAATTAGAACCTGAGTATAAATTTAC-TTTCTCAAATTCTTGCCATGAGAGGTTGATGAGTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAACACATGAGAACCTTCCAGAGTCCACGTGTTGCTTATGCTGA-TTTGTTGCAGGGGAGGAGAGTAGA-------------------------TGGGGCTGTGCCCAGTTTCTGTTCCGGCCACTATGGGCTTTATGTGGTCACTGCTTGGCTGGGTCATC-TTTGCTGCTCCATTGTCCTTGGCCCTTCAGTAGAACCTTGTCCCACTAAGACCTGTGATCACAGGGAGTTGGATGTCACCTAGGGTGGTCCCTGCATACAAATCTCCTTGCGGTATCAAGAGAC-AAATTTTCAGACCTGTCTAGGTCTTGCCTTCCTCCCAGGGCTTTTTCCTCAATTGTATTTTCAATTTTTCT-C-
s panTro5.chr6             30160338 813 + 175400573 TGCGATGGGCTGTTTAAAGTGTGACCCCTCACTGTGACGGATATGAATTTGTTCATGAATA-TTTTTTTCTATAGTGTGAGACAGCTGCCTTGTGTGGGACTGAGAGGCAAGAGTTGTTCCTGCCCTTCCC-TTTGTGACTTGAAGAACC-CTGACTT-TGTTTCTGCAAAGGCACCTGCATGTGTCTGTGTTCATGTAGGCATAATGTGTGGAGGTGGGGAGACCACCCCACCCCCATGTCCACCATGACCCTCTT-CCCACGCTGACCTGTGCTCCCTC--CCCAATCATCTTTCCTGTTCCAGAGAGGTGGGGCTGAGGTGTCTCCATCTCTGTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTCCTTCCCTAT-TAAAATTAGAACCTGAGTATAAATTTAC-TTTCTCAAATTCTTGCCATGAGAGGTTGATGAGTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATCAATGGAACGCATGAGAACCTTCCAGAGTCCACGTGTTGCTTATGCTGA-TTTGTTGCAGGGGAGGAGAGTAGA-------------------------TGGGGCTGTGCCCAGTTTCTGTTCCGGCCACCATGGGCTTTATGTGGTCACAGCTCACCTGGGTCATC-TTTGCTGCTCCATTGTCCTTGGCCCTTCAGTAGAACCTTGTCCCACCAAGACCTGTGATCACAGGGAGTTGGATGTCACCTAGGGTGGTCCCTGCATACAAATCTCCTTGTGGTATCAAGAGAC-AAATTTTCAGACCTGTCCAGGTCTTGCCTTCCTCCCAGGGCTTTTTCCTCAATGGCATTTTCGATTTTTCT-C-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30390960 814 + 173848474 TGCGATGGGCTGTTTAAAGTGTGACCCCTCACTGTGACAGATATGAATTTGTTCATGAATA-TTTTTTTCTATAGTGTGAGACAGCTGCCTTGTGTGGGACTGAGAGGCAAGAGTTGTTCCTGCCCTTCCCTTTTGTGACTTGAAGAACC-CTGACTT-TGTTTCTGCAAAGGCACCTGCATGTGTCTGTGTTCTTGTAGGCATAATGTGAGGAGGTGGGGAGACCACCCCACCCCCATGTCCACCATGACCCTCTT-CCCACGCTGACCTGTGCTCCCTC--CCCAATCATCTTTCCTGTTCCAGAGAGGTGGGGCTGAGGTGTCTCCATCTCTGTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTCCTTCCCTAT-TAAAATTAGAACCTGAGTATAAATTTAC-TTTCTCAAATTCTTGCCATGAGAGGTTGATGAGTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAACACATGAGAACCTTCCAGAGTCCACGTGTTGCTTATGCTGA-TTTGTTGCAGGGGAGGAGACTAGA-------------------------TGGGGCTGTGCCCAGTTTTTGTTCCGGCCACCATGGGCTTTATGTGGTCACTGCTTGGCTGGGTCATC-TTTGCTGCTCCATTGTCCTTGGCCCTTCAGTAGAACCTTGTCCCACCAAGACCTGTGATCACAGGGAGTTGGATGTCACCTAGGGTGGTCCCTGCATACAAATCTCCTTGTGGTATCAAGAGAC-AAATGTTCAGACCTGTCCAGGTCTTGCCTTCCTCCTAGGGCTTTTTCCTCAATGGTATTTTCGATTTTCCT-C-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      45083 812 +   2037526 TGCGATGGGCTGTTTAAAGTGTGACCCCTCACTGTGACAGATATGAATTTGTTCATGAATA-TTTTTTTCTATAGTGTGAGACAGCTGCCTTGTGTGGGACTGAGAGGCAAGAGTTGTTCCTGCCCTTCCC-TTTGTGACTTGAAGAACC-CTGACTT-TGTTTCTGCAAAGGCACCTGCATGTGTCTGTGTTCTTGTAGGCATAATGTGAGGAGGTGGGGAGACCA-CCCACCCCCATGTCCACCATGACCCTCTT-CCCACACTGACCTGTGCTCCCTC--CCCAATCATCTTTCCTGTTCCAGAGAGGTGGGGCTGAGGTGTCTCCATCTCTGTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTCCTTCCCTAT-TAAAATTAGAACCTGAGTATAAATTTAC-TTTCTCAAATTCTTGCCATGAGAGGTTGATGAGTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAACACATGAGAACCTTCCAGAGTCCACGTGTTGCTTATGCTGA-TTTGTTGCAGGGGAAGGGAGTAGA-------------------------TGGGGCTGTGCCCAGTTTCTGTTCTGGCCACCATGGGCTTTATGTGGTCACTGCTTGGCTGGGTCATC-TTTGCTGCTCCATTGTCCTTGGCCCTTCAGTAGAAACTTGTCCCACCAAGACCTGTGATCACAGGGAGGTGGATGTCACCTAGGGTGGTCCCTGCATACAAATCTCCTTGTGGTATCAAGAGAC-AAATTTTCAGACCTGTCCAGGTCTTGCCTTCCTCCCAGGGCTTTTTCCTCAATTGTGTTTTCGATTTTTCT-C-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74725738 806 + 122973662 TGCGATGGGCTGTTTAAAGTGTGACCCCTCACTGTGACGGATATGAATTTGTTCATGAATATTTTTTTTCTGTAGTGTGAGACAGCTTCCTTGTGTGGGACTGAGAG---------GTTCCTGCCCTTCCC-TTTGTGACTTGAAGAACC-CTGACTT-TCTTTCTGCAAAGGCACCTGCATGTGTCTGTGTTCCTGTAGGCATAGTGTGAGGAGATGGGGAGACCACCCCACCCCCGTGTCCACCATGACCCTCTTCCCCATGCTGATCTATGCTCCCTC--CCCAATCATCTTTCCTGTTGCAGAGAGGTGGGGCTGAGGTGTCTCCATCTTTGTCTCAACTTCATGGTGCGCTGAGCTGTAACTTCTTCCTTCCCTCT-TAAAATTAGAACCTGAGTATAAATTTAC-TTTCTCAAATTCTTGCCATGAGAGGTTGATGAGTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAACACATGAGAACCTTCCAGAGTCCACGTGTTTCTTATGCTGA-TTTGTCGCAGGGGAGGAGAGTAGA-------------------------TGGGGCTGTGCCCAGTTTCTGTTCCAGCCACCATGGGCTTTATGTGGTCACTGCTTGGCTGGGTCATC-TTTGCTGCTCCATTGTCTTTGGCCCTTCAGTAGAACCTTGTCTCACCAAGACCCGTGATCACAGGGAGCTGAATGTTACCTAGGGTGGTCCCTGCATACAAATCTCCTTGTGGTATCAAAAGAC-AAATTTTCAGACCTGTCCAGGTCTTGCCTTCCTCCCAGGGCTTTTTCCTCAATTGTATTTTCCATTTTTCT-C-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30547904 809 + 172585720 TGCGATGGGCTGTTTAAAGTGCTACCCCTCACTATGACAGATAGGAATTTCTCCATTAATA-TTTTTTTCTATAGTGTGAGACAACTGCCTTGTGTGGGACTGAGAGGCAAGATTTGTTCACACCT-TCCC-TTTGTGACTTCAAGAATC-CTGACTT-TCTTTCTGCAAATGCACCTGAATGTGTCTGTATTCCTGTAGGCATAATGTGAGGAGGTGGGGAGCCCAACCCACCCCCGTGTCCACTATGACCCTCTT-CCCACGCTGACCTGTGCTCCCTT--CCCAATCATCTTTCCTCCTCCAGAGAGGTGGGGCTGAGATGTCTCCAT--CTGTCTCAACTTTAT-ATGCACTGAGCTGTAACTTCTTACTTCCCTAt-taaaattagaatctgaatataaatttat-atttTCAAATTCTTGCCGTGAGAGGTTGATGAGTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGATAAAATTAATGGGAGACATGAGAACCTTCCAGAGTCCATGTGTTTCCTGTGCTGA-TTTGTTGCAGGGGAGGAGAGTAGA-------------------------CGGGGCTGTACCCAGTGGGTGCTCAGGCCACCGTGCGCTTTATGTGGTCACTGCTCAGCTGAGTCATC-TTTGCTGCTCCATTGTCCTTGGCCCTTCAGTAGAACCTTGTCCCACCATGACCTGTGATCACAGGGACTTGGATGTCACCTAGGGTGGTCCCCGCATACAAGGGTCCTTGTGGTATCAAAAGAC-AAATTTTCAGAACTTTCAAGCTCTTGCCCTCCTCCCAGGGCTCCTTCCTGGATTGTATTTTCCGTCTTTTC-T-
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     193783 807 -    863181 CATGACGGGTTGTTTAAAATGTCACCCTGCACTGTGACTGATATGAATTTGTTCATGAATA---TTTTTCTATAGTGTGAGACAGCTGCCTTGTGTGGAACTGAGAGGCAAGATCTGTTCACGCCC-TCCC-TTTATGACTTCAAGAACT-CTGACTT-TCTTTCTGCAAAGGCACCTGAATGTGTCTGTGTTCCTGTAGGCATAATGTGAGGAAGTGGGGAGACCACCTCACCCCTGTGTTCACCATGACCCTCTTCCCCACGCCGACCTGTGCTCCCTC--CCCAATCATCTTTCCTGCTCCAGAGAGGTGGGGCTGAGAGGTCTCCATCCCTGTCTCAACTTTAT-ATGCACTGAGCTGTAACTTCTTACTTCCCTGT-TAAACTTAGAATCTGAGTATAAATTTAC-TTTTTCAAATTCTTGCCATGAGAGGTTGATGGG----TTAAAGGAGAAGATTCCTGAAATTTGAGAGACAAAATAAATGGAAGACATGAGAACCTTCCAGAGTTCATGTGTTCCTTATGCTGA-TTTGTTGCAGGGGAGGAGAGTAGA-------------------------TGAGGCTGTGCCCAGTTTGTGTTCCGGCCACCACGGGCTTTATGTGGTCACTGCTTGGCTGGGTCATCTTTTGCTTCTTCATTGTCCTTAGCCCTTCAGTAGAACCTTGTCCCACCAAGACCTGTGATCACAGGGAATTGGATGTCACCTAGGGTGGTCCCTACATACGAGGGTCCTTGTGGTATCAAGAAAC-AAATTTTCACACCTGTTCAGCTCTTGCCCTCCTTTCAGGTCTCTTTTCTGGATTGTATTTTCCATATTTTC-C-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29365950 814 -  71996105 CATGATGGGCTGTTTAAAGTGTGACCCCTCGCTGTGACTGATACGAATTTGTTCATGAATA--TTTTTTCTATAGTGTGAGACAGCTGCCTTGTGTGGGACTGAGAGGCAAGATTTGTTCATGCCT-TCCC-TTTGTGACTTCAAGAACC-CTGACTTCTGTTTCTACAAAGGCATCTGAATGTGTCTGTGTCCCTGTAGGCATAATGTGAGGAGGTGGGGAGACCACCCCAGCCCCGTGTCCACCATGACCCTCTTCCCCACGCTGACCTGCATTCCTTC--CCCCATCACCTTTCCTGTTCCAGAGAGGTAGGGCTGGGATGTCTCCATCTCTTTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTGCTTCCCTAT-TAAAATTAGAATCTGAGTACAAATTTACTTTTTTCAAATTCTTGCCATGAGAGGTTGATGAGTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAAGACCTGAGAATGTTCCAGAGTCCACGTGTTTCTTGTGCTGA-TTTGTTGCAAGGGAGGAGAGTAGA-------------------------TGGGGCTGTGCCCAGTGGGTACTTGGGCCACTGTGGGCTTTATGTGGTCACAGCTCGGCTGGGTCATC-TTTGCTGCTCCATTGTCCTTGGCCCTTCAGTAGAACCTTGTCCCATCAGGACCTGTGATCACAGGGACTTGGATGTCACGTAGGGTGGTCCTTACACATAGAAGTCCTTCCGGTATCAAGAGAC-AAATTTTCAGACCCCTGTATCTCTCGCCCTCCTTCCAGGTCTCTTTCCTGGATTGTATTTTCCATCTTTTT-C-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     193315 807 +    273075 CATGACAGGTTGTTTAAAATGTCACCCTCCACTGTGACTGATATGAATTTGTTCATGAATA---TTTTTCTATAGTGTGAGACAGCTGCCTTGTGTGGAACTGAGAGGCAAGATCTGTTCACGCCC-TCCC-TTTATGACTTCAAGAACT-CTGACTT-TCTTTCTGCAAAGGCACCTGAATGTGTCTGTGTTACTGTAGGCATAATGTGAGGAAGTGGGGAGACCACCTCACCCCTGTGTTCACCATGACCCTCTTCCCCACGCCGACCTGTGCTCCCTC--CCCAATCATCATTCCTGCTCCAGAGAGGAGGGGCTGAGAGGTCTCCATCCCTGTCTCAACTTTAT-ATGCACTGAGCTGTAACTTCTTACTTCCCTGT-TAAACTTAGAATCTGAGTATAAATTTAC-TTTTTCAAATTCTTGCCATGAGAGGTTGATGGG----TTAAAGGAGAAGATTCCTGAAATTTGAGAGACAAAATAAATGGAAGACATGAGAACCTTCCAGAGTTCATGTGTTTCTTATGCTGA-TTTGTTGCAGGGGAGGAGAGTAGA-------------------------TGGGGCTGTGCCCAGTTTGTGTTCCGGCCACCACGGGCTTTATGTGGTCACTGCTTGGCTGGGTCATCTTTTGCTCCTTCATTGTCCTTAGCCCTTCAGTAGAACCTTGTCCCACCAAGACCTGTGATCACAGGGAATTGGATGTCACCTAGGGTGGTCCCTACATACGAGGGTCCTTGTGGTATCAAGAAAC-AAATTTTCACACCTGTTCAGCTCTTGCCCTCCTTCCAGGTCTCTTTTCTGGATTGTATTTTCCATATTTTC-C-
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     525144 811 -   1771730 TGTGAAGGGCGGTTCAGAGTGTCACCTCTCACTGTGACTAATACGAATTTGTTCATGAATA--TTTTCTCTATAGCGTGAGATAGCCGCCTTGTGTGGGACTGAGAAGCAAGATTTGTTCACGCCT-CCCT-TTTGTGACTTTGAGTACC-CTGAATTCTGTTTCTGTAAAGGTGTCCAAATGTGTCTTCGTCCCTGTTAGTATAATGTGAGAAGGT-GGGGGACCAGTCCACCCTCATGTCCTCCATGACCCCCTTCCCTGCACGGCCCCATGTTGTTTCTGCCCAGTTATGTTTCCTTTTCCAGAGACATGGGGCTTGGATGTCTTTATGTCTGTCTGAACTTCATGGTGTACTGAGCTGCAATTTCCTGCTTCCCTAT-TAAAATTAGAATCTGAGTATAAATTTAC-TTCTTCAAATTCTTGCCATGAGAGGTTGATGAGTTAATTAAAGGAGGAGATTACTAAAACTTATGAGACAAAATAAATGGAAGACCTGAGAACCTTCCGGAGTCTATGTGTTTCTTCTACTGA-TCTCTTGCATAG---GAGAGTAGA-------------------------TG-GGCTGTGGCTGGTGGGAGCTCAGGCCGCTGTGGGCTTTATGTGGTCACTGCTTGGCTGGGTCATC-TTTGCTGCTCCAATGGCCTTGGTCCTTCAGTAGAACCTTGTCCCACCAGGACCTGTGATCACAGGGACTGAGATGTCATTTAGAGCAGTCCCTGCACACAGAAGTCCTTGTGCTATCAAGAGACTGAGCTTTCAGTCCCGTCCAGTCCTTGCCCTCCGTCCAGGGCTC-TTCCTGGATTGTATTTTCCATCTTTTCAC-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1      15741 813 -    383796 TGCGATGGGCAGTTCAGAGTGTTACCTCTCACAGTGACTAATATGAATTTGTTCATGAATA--TTTTCTCTATAGTGTGAGGTAGCCGCCTTGTGTGGTACTGAGAAGCAAGATTTGTTCACGCCT-CCCT-TTTGTGATTTCAAGTACC-CTGAATTCTCTTTCTGCAAACGTGTCAAAATGTGTCTTCATCCCTGTTAGTATAATGTGAGAAGGT--GGGCACCAGTCCACCCCCGTGTCCTCCATGACCCCCTTCCCCGCACGGCCCCATGTTGTTTCTACCCAATGATCTTTCCTGTTCCAGAGACATGGGGCTTGGATGTCTTTATCTCTGTCTGAACTTCATGCTGCACTGAGCTGCAATTTCCTACTTCCCTAT-TAAAATTAGAATCTGAGTATAAATTTAC-TTCTTCAAATTCTTGCCATGGGAGGTTGATGAGTTAATTAAAGGAGGAGATCACTAAAGTTTAACAGACAAAATAAATGGAAGACTTGAGAACCTTCCAGAGTCTATGTGTTTCTTCTACTGA-TCTGTTGCAGAGGATGAGAATAGA-------------------------TG-GGCTGTGGCTGGTGGGAGCTCAGGCCACTGTGGGCTTTATGTGGTCACTGCTCGCCTGTGTCATC-TTTGCTGCTCCAATGGCCTTGGTCCTTCAGTAGAACCTTGTCCCACCAGGGCCTGTGATCACAGGGACTCAGATGTCATTTAGGGCAGTCCCTGCACACAGAAGTCCTTGTGGTATCAAGAGACTAAGTTTTCAGACCTGTCCAGTGCTTGCCCTCCTTCTAGGGCTC-TTCCTGGATTGTATTTTCCATCTTTTCAC-
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17268579 750 -  18854210 TGTGGTGGGTTGTTC--AGTGTCACAATTTGCTGTGACTAACCTGAATTTGTTCCTT--TT-TTTTTTTCTATAGCCTAAGACAGTTGCCTTGTGTGGGACTAAG----------TGTTCACAACT-CCCT-TTTGTGATTTCAAGAGCCTCTGAGTT---TTTCTGCAAATGCTTCTGAATGACTCTGCATCCTTGTTTGCTTGATGTGAGGA-GTGGGATGGCCACCATACTGCCATGCCCACTGTGACGCCTTCTCCCACACTGACCTGTG-TCCCTT--CTTGATTATCTTTCCTGTTACAGAGAGGTAGGGCTGGGAGGTCTCCATCCCTGTCTCAACTTTGTGGTGTACTGAGCTG----------CTTCCCTGTCTAAAATAAGAATTTGAAGGTAAATTTGT-TTTCTCAAATTCTTTGCATGAGAGG------------------------------------CAAGAGGGGAAATAAAAGGGAGACCTAAGAACCTTCCAGAATC----TGTTTGCTGTGCTAAGTCTTTTGCAGATGGGGACAGGAGAAAGCTGTGAGGAGCCGAGTGTGGATCGGGCCTGTGCCCAGTTGGT----------------GCTTTATGTGATCACTATTTGGCAGAGTCATC-CTCACTGTACCAC---CTGTGATCC-----CAGGGGTTTGTCCCAGCAGGACCTGTGACCACAGGGGCTGACACATGGCCCAGGGTGGTTCCTGCACACAGGAGTGTCTGTGATATCAAGAGATAGAATTTTCACA-CTGTTCAGCTCTTGCCCTCCTCCTAGGGCTCTTTCCTAAATGGCATTTTCGATCTTTTC-CC
i otoGar3.GL873550         C 0 I 1153
e mm10.chr17               58000375 5960 -  94987271 I
e colAng1.NW_012115577v1      44423 4356 -   1829203 I
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=1327596.000000
s hg38.chr6_GL000254v2_alt  1290284 298 +   4827813 CAAT-CT--TTTTAAAGGAACCAGATTGTGACATTTGCAGAGAGGAGTGGTCCCATAGTTTCTCATCATGATTAACTTTCTGTTGGAACTCCTGTT--CTGCCCTCCTACTCTTCTTCCTGCTCTGAATTGTAGTAATCCTAGTGCTGGCTCCAATCCAAACTCATAGATTTATAAAGCAGAGTCTAATTTAGATTCATATGTGGTTGG-AAAATTGTACCCATAAGGCTAGGGTTATTGTTCCTGAAGAGAAATATATGGTTTTGTGCTGAAGTGTGCAGGAGGGTTGGTGT------GGG---------------AGG----AGGGA-------
s panTro5.chr6             30161151 298 + 175400573 CAAT-CT--TTTTAAAGGAACCAGATTGTGACATTTGCAGAGAGGAGGGGTCCCATAGTTTCTCATCATGGTTAACTTTCTGTTGGAACTCCTCTT--CTGCTCTCCTACTCTTCTTCCTGCTCTGAGTTGTAGTAATCCTAGTGCTGGCTCCAATCCAAACTCATAGATTTATAAAGCAGAGTCTAATTTAGATTCATATGTGGTTGG-AAAATTGTACCCATAAGGCTAGGGTTATTGTTCCTGAAGAGAAATATATGGTTTTGTGCTGAAGTGTGCAGGAGGGTTGGTGT------GGG---------------AGG----AGGGA-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30391774 298 + 173848474 CAAT-CT--TTTTAAAGGAACCAGATTGTGACATTTGCAGAGAGGAGGGGTCCCATAGTTTCTCATCATGGTTAACTTTCTGTTGGAACTCCTCTT--CTGCTCTCCTACTCTTCTTCCTGCTCTGAGTTGTAGTAATCCTAGTGCTGGCTCCAATCCAAACTCATAGATTTATAAAGCAGAGTCTAATTTAGATTCATATGTGGTTGG-AAAATTGTACCCATAAGGCTAGGGTTATTGTTCCTGAAGAGAAATATATGGTTTTGTGCTGAAGTGTGCAGGAGGGTTGGTGT------GGG---------------AGG----AGGGA-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      45895 298 +   2037526 CAGT-CT--TTTTAAAGGAACCAGATTGTGACATTTGCAGAGAGGAGGGGTCCCATAGTTTCTCATCATGATTAACTTTCTGTTGGAACTCCTCTT--CTGCCCTCCTACTCTTCTTCCTGCTCTGAGTTGTAGTAATCCTAATGCTGGCTCCAATCCAAACTCATAGATTTATAAAGCAGAGTCTAATTTAGATTCATATGTGGTTGG-AAAATTGTACCCATAAGGCTAGGGTTATTGTTCCTGAAGAGAAATATATGGTTTTGTGCTGAAGTGTGCAGGAGGGTTGGTGT------GGG---------------AGG----AGGGA-------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74726544 302 + 122973662 CAAT-CT--TTTTAAAGGAACCAGATTGTGACATTTGCAGAGAGGAGGGGACCCATAGTTTCTCATCATAGTTAACTTTCTGTTGGAACTCCTCCT--CTGCCCTCCTACTCTTCTTCCTGCCCTGAGTTGTAGTAATCCTAGTGCTGGCTCCAACCCAAACTCACAGATTTATAAAGCAGAGTCTAATTTAGATTCATATGTGGTTGG-AAAATTGTACCCATAAGGCTAGGGTTATTGTTCCTGAAGGGAAAAATATGGTTTTGTGCCGAAGTGTGCAGGAGGGTTGGTGT------GGG---------------AGGAGGAAGGGA-------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30548713 307 + 172585720 CCAATCT--TTTTAAAGGAACCAGATTCTGAAATTTACAGAGAGGAGGGGTCTCATAGTTTCTCATCATAGGTAACTTTCTGTTGGAACTCCTCTT--CTGCACTTCCACTCTTCTTCCTGCCCTGAGTTGTAGTAATCCTAGTGCTGGCTCCAATAGAAATCCATAGATTTATAAAGCAGAGTCTAATTTAGATTCACATGTGGTTGG-ACAATTGGATCCCTAAGTCTAGGGTTATCTTTCCTAAAGAGAAAAATATGTTTGTGTGCTACAGTCTGCAggagggttggtgt------gggaagag-------ggaggg----aggga-------
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     194590 312 -    863181 CCAA-CC--TCTTAAAGGAAGCCGATTCTGAAATTTACAGAGAGAAAGTGTCCCATAGTTTCTCATCATAGGTAACTTTCTGTTGGAACTCCTCTT--CTGCTCTCCTACTCTTCTTCCTGCCCTGAGTTGTAGTAATCCTAGTGCTGGCTCCAATCCAAACTCATGCATTTATAAGGCAGAGTCTAATTTAGATTCATATGTGGTTGG-AC-ACTGGACCCATAAGCCTAGGATTATCTTTCCTAAAGAGAGAAATATGGTTGTGTGCTGAAGTGTGCAGGAGGCTTGGTGT------gggaggagggagagaggaggg----aggga-------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29366764 300 -  71996105 CCCA-GCTTTCTTAAAGGAAGCAGATTCTGAAATTTACAGAGAGGAGGAGTCCCATAGCTTCTCATCATAGGTAACTTTCTGTTGGAGCTCCTCTT--CTGCTGTCCTGCTTATCTTCCTGCCCTGAGTTGTAGTAATCTTAATGCTGGCTCCAATCCAAACTCATGGATTTATAAAGCAGAGTCTAATTTAGATTCATATGTGGTAGGAAA-ATTGGACCCAGAAGCCTAGGATTATCTTTCCTGAACAGAAAAACATGGTTGTGTGCTGCAGTGTGCAGGAGGATTGGTGT------GGG---------------GGG----AGGGA-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101121v1     194122 312 +    273075 CCAA-CC--TCTTAAAGGAAGCCGATTCTGAAATTTACAGAGAGGAAGTGTCCCATAGTTTCTCATCATAGGTAACTTTCTGTTGGAGCTCCTATT--CTGCTCTCCTACTCTTCTTCCTGCCCTGAGTTGTAGTAATCCTAGTGCTGGCGCCAATCCAAACTCATGCATTTATAAAGCAGAGTCTAATTTAGATTCATATGTGGTTGG-AC-ACTGGACCCATAAGCCTAGGATTATCTTTCCTGAAGAGAGAAATATGGTTGTGTGCTGAAGTGTGCAGGAGGCTTGGTGT------gggaggagggagagaggaggg----aggga-------
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     525955 306 -   1771730 CAGC-CT--TCTTACAGGAACCAGATTCTGACATTTGCAGAGAGAAGGAGTCCCATAGTTTCTCATCATAGGTAACTTTCTGTTGGAACTCCTTCTACTTTCTCTCCTACTCCTCCTCCTGCCCCGAGTTGTAGTGATCCTAGTGCCAACTCCAATACAAACCCATGGATTTGTAAAACAGAGTCTGATTTAGATTTATACGCAGTTAG-AAAATTGCACTTATAATCCTAGGATTATCTTTCCTGAAGAGAGACATATGATTGTATGCTGCCATGTGCAGGAGGGTTGGTGTGCAGGAGGG---------------AGG----AGggg-------
i cebCap1.NW_016107755v1   C 0 I 12
s aotNan1.NW_018496904v1      16554 300 -    383796 CAGC-CT--TCTTACAGGAACCAGATTCTGATATTTGCAGAGAGGAGGGGGCCCATAGTTTCTCATCATAGGTAACTTTCTGTTGGAACTCCTTCTGCTCTCTCTCCTACTCTTCTTCCTGCCCTGAGTTGTAGTAATCCTAGTGTGGGCTCCAATACAAACCCATGGATTTGTAAAACAGTGTCCAAATTAGATTTATATGCAGTTGA-AAAATTAGACTTATAATCCTAGGATTATCTTTCTTGAAGAGAGACATATGATTGTGTGCTGCCGTGTGCAGGAGGGTTGGTGT------GGG---------------AGG----AGGGA-------
i aotNan1.NW_018496904v1   C 0 I 24969
s otoGar3.GL873550         17270482 297 -  18854210 caac-ct--ttttaaaggaaccatattcTGGAATTAGCAGAGAGGAGGGAGCCCATCACTTCTCATCTTAGGTAAATTTCCT------CTTCTGCT--CTGCTCCACTGC-CCCCTCCCTGCCCTTAGTTCTAGTAACCTTAGTACTGGCTCCATCCCTAGCTCGTGGATTGTTAAAGCAGGCTCTAAGTTAGATTTATATATGTTTGC-AAAAATGGGCCTA-GAGGCAAGGATTGTTTTTTCTAAGGAGAGAAATATCGCTGTGTGCTGCCGCGTGCAGGAGGGTCAGTGT------GGA---------------AGG----GGGAGTGAGAGA
i otoGar3.GL873550         I 1153 C 0
e mm10.chr17               58000375 5960 -  94987271 I
e colAng1.NW_012115577v1      44423 4356 -   1829203 I
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=289291.000000
s hg38.chr6_GL000254v2_alt  1290582 91 +   4827813 GGACACACAAGCAGCCCTGGTGAGAAAAGCACTGGCGGCGTGGATGtccatgtgaactta---tgttctttagctgccac----aaaacagcatttgc
s panTro5.chr6             30161449 91 + 175400573 GGACACACAAGCAGCCCTGGTGAGAAAAGCACTGGCGGCATGGATGTCCGTGTGAACTTA---TGTTCTTtagctgccac----aaaacagcatttgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30392072 91 + 173848474 GGACACACAAGCAGCCCTGGTGAGAAAAGCACTGGCGGCATGGATGtccatgtgaactta---tgttctttagctgccac----aaaacagcatttgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      46193 91 +   2037526 GGACCCACAAGCAGCCCTGGTGAGAAAAGCACTGGCGGCATGGATGtccatgtgaactta---tgttctttagctgccac----aaaacagcatttgc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74726846 91 + 122973662 GGACACACAAGCAGCCCTGGTGAGAAAAGCACTGGCGGCATGGACGTCCGCGTGAACTGA---TGTTCTTtagctgccac----aaaacaacatttgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30549020 97 + 172585720 ggACACACCAGCAGCCCTGGTGAGAAAAGCTCTGCTGGCACTGATGTCAGTGTGAGATGATGTTGTTCTGTAGTTGCCATGAAAAAAAAAGTATTTG-
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     194902 94 -    863181 ggCCACACAAGCAGCCCTGGTGAGAAAAGCACTGGCAGCACTGACAtcagtatgagataatgttgttctgtagctgccac----aaaacagcatttgc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29367064 94 -  71996105 GGACACACAAGCAGCCCTGGTGAGAAAAGCACTGGTGGCACTGATGGTGGtgtgagatgatgttgttctttagctgccat----gaaacagcatttga
i chlSab2.chr17            C 0 T 28304
s manLeu1.NW_012101121v1     194434 94 +    273075 ggCCACACAAGCAGCCCTGGTGAGAAAAGCACTGGCAGCACTGATGtcagtatgagatgatgttgttctgtagctgccac----aaaacagcatttgc
i manLeu1.NW_012101121v1   C 0 C 0
s cebCap1.NW_016107755v1     526273 94 -   1771730 gggcacacaagcagcactggtgacaaaagcgctggtggcactgatgtcagtgtgagaggatgttgtgctgtagctgccac----aaaacagcatttgg
i cebCap1.NW_016107755v1   I 12 C 0
s otoGar3.GL873550         17270779 50 -  18854210 GGGCACACA--CAGCACTGGGGAGAAAAGCAAAGGTAGCA-AGATGTCAGTGT---------------------------------------------
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1      16854 24969 -    383796 I
e colAng1.NW_012115577v1      44423 4356 -   1829203 I
e macNem1.NW_012012100v1       4924 93222 +   1495729 I

a score=206808.000000
s hg38.chr6_GL000254v2_alt         1290673 64 +   4827813 cctgtggctacattaataaaggtatgggctttagaatagggagatGCTCTACAGTGGtcattca
s panTro5.chr6                    30161540 64 + 175400573 cctgtggctacattaataaagatatgggctttagaatagggaggtGCTCTACAGTGAtcattca
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30392163 64 + 173848474 cctgtggctacattaataaagatatgggctttagaatagggaggtGCTCTACAGTGAtcattca
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             46284 64 +   2037526 ccagtggctacattaataaaggtatgggctttagaatagggaggtGCTCTACAGTGAtcattca
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74726937 64 + 122973662 cctgtggctacattaataaagatatgggctttagaatagggaggtGCTCTACAGTGAtcattca
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30549117 64 + 172585720 TCTGAGGCTACATTAACAAAGATATTGCCTCTAGAATAGAGGGGTTCTCTACAATGATCATTCC
i rheMac8.chr4                    C 0 C 0
s cerAty1.NW_012002535v1            194996 64 -    863181 cctgaggttacattaataaaggtattggctttagaatagggaggtGCTCTACAGTGAtcattca
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    58602 64 -    117593 tctgaggctacattaacaaagatattgcttctagaatagaggggTTCTCTACAGTGAtcattcc
i chlSab2.chr17_KE148042v1_random n 28304 C 0
s manLeu1.NW_012101121v1            194528 64 +    273075 cctgaggttacattaataaaggtattggctttaggatagggaggtGCTCTACAGTGAtcattca
i manLeu1.NW_012101121v1          C 0 C 0
s cebCap1.NW_016107755v1            526367 64 -   1771730 cctgaggctacattaataaagatattgcctttagaataaggaggtgCTCTATGGTGAtcattca
i cebCap1.NW_016107755v1          C 0 C 0
s otoGar3.GL873550                17270829  7 -  18854210 ----------------------------------------GAGATGT-----------------
i otoGar3.GL873550                C 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e macNem1.NW_012012100v1              4924 93222 +   1495729 I

a score=328342.000000
s hg38.chr6_GL000254v2_alt         1290737 71 +   4827813 ttcaactgacatttgttgtctgctagggatatgactgcttttgcatttagaaagcatccttaaagtaaaaa-
s panTro5.chr6                    30161604 71 + 175400573 ttcaactgacatttgttgtctgctagggatatgactgcttttgcatttagaaagcatccttaaagtaaaaa-
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30392227 71 + 173848474 ttcaactgacatttgttgtctgctagggatatgactgcttttgcatttagaaagcatccttaaagtaaaaa-
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             46348 71 +   2037526 ttcaactgacgtttgttgtctgctagggatatgactgcttttgcatttagaaagcatccttaaagtaaaaa-
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74727001 71 + 122973662 ttcaactgacatttgttgtctgctagggatatgactgcttttgcatttagaaagcatcattaaagtaaaaa-
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30549181 71 + 172585720 TTCAGCTGACGTTTGTTGTCTCCTAGGGATATGACTGTTTTTGCGTTTAGAAAGCATTATTAAAGTAAAAA-
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      172993 71 +    231697 CTCAGCTGACATTTGTTGTCTCCTAGGGATATGACTGTTTTTGCATTTAGAAGGCATTATTAAAGTTAAAA-
i macFas5.chr4_KE145577_random    N 0 C 0
s cerAty1.NW_012002535v1            195060 71 -    863181 cttaactgacatttgttgtctactaggtatatgactctttttgcatttagaaaacatcattaaagtcaaaa-
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    58666 71 -    117593 ttcagctgacatttgttgtctcctagggatatgactgtttttgcatttagaaggcattattaaagtaaaaa-
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012101121v1            194592 71 +    273075 cttaactgacatttgttgtctactaggtatatgactctttttgcatttagaaaacatcattaaagtcaaaa-
i manLeu1.NW_012101121v1          C 0 C 0
s cebCap1.NW_016107755v1            526431 71 -   1771730 ttgaactgacatttgttgtctgctaggtaaatggctgtttttgcatttggaaaacatctttaaagtaaaaa-
i cebCap1.NW_016107755v1          C 0 I 23853
s otoGar3.GL873550                17270836 55 -  18854210 ---------------TTGTCTGCCAGATACAGGACT--TTTTACATCTAGGAAACATCATTCAAGTTAAAAC
i otoGar3.GL873550                C 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e macNem1.NW_012012100v1              4924 93222 +   1495729 I

a score=136732.000000
s hg38.chr6_GL000254v2_alt         1290808 37 +   4827813 cagaaaaatttctggggttatggtgcatacgttctag
s panTro5.chr6                    30161675 37 + 175400573 cagaaaaatttctggggttatggtgcatacgttctag
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30392298 37 + 173848474 cagaaaaatttctggggttatggtgcatacgttctag
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             46419 37 +   2037526 cagaaaaatttctggggttatggtgcatacgttctag
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74727072 37 + 122973662 cagaaaaatttctggcgttgtggtgcatacgttctag
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30549252 37 + 172585720 TAGAAAAATTTCTAGCCTTGTGGTGCACACGTTCTAG
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      173064 37 +    231697 CAGAAAAATTTCTGGTCTTGTGGTGCATATGTTCTAG
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            195131 36 -    863181 cagaaaaatttccagccttttggtgtatac-ttctag
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    58737 37 -    117593 cagaaaaatttctggtcttgtggtgcatacattctag
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012101121v1            194663 36 +    273075 cagaaaaatttccagccttttggtgtgtac-ttctag
i manLeu1.NW_012101121v1          C 0 C 0
s otoGar3.GL873550                17270891 37 -  18854210 CAGAAAACTTGCAAgccttctggagcatgtgttctag
i otoGar3.GL873550                C 0 N 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e macNem1.NW_012012100v1              4924 93222 +   1495729 I

a score=319629.000000
s hg38.chr6_GL000254v2_alt         1290845 87 +   4827813 ATGcaggcttgtccaacccgcggctcgtgggctgcatgtggcccaggacaattttgaatgtgaggac-ttttttgcttatctgtggtg
s panTro5.chr6                    30161712 87 + 175400573 ATGcaggcttgtccaacccgcggcttgtgggctgcatgtggcccaggacaattttgaatgtgaggac-ttttttgcttatctgtggtg
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30392335 87 + 173848474 ATGcaggcttgtccaacccgcggcttgtgggctgcatgtggcccaggacaattttgaatgtgaggac-ttttttgcttatctgtggtg
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             46456 87 +   2037526 ATGcaggcttgtccaacccgcggctcgtgggctgcatgtggcccaggacaattttgaatgtgaggac-ttttttgcttatctgtggtg
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74727109 87 + 122973662 ATGcaagcttgtccagcccgcggcttgtgggctgcatgtggcccaggacaattttgaatgtgaggac-ttttttgcttatctgtggtg
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30549289 87 + 172585720 ATAcaagcttgtccaacctgcggctcgcgggctgcatgtggcccaggacagttttgaatgtgagggc-ttttttgcttatctgtggtg
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      173101 87 +    231697 ATAcaagcttgtccaacctgcggctcgcgggctgcatgtggcccaggacagttttgaatgtgaggac-ttttttgcttatctgtggtg
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            195167 87 -    863181 ATGcaagtttatctaacccatggctctcgggctgcatgtggtctaggacagctgtgaatgtgaggac-gtttttgcctatctgtggtg
i cerAty1.NW_012002535v1          C 0 I 11873
s chlSab2.chr17_KE148042v1_random    58774 88 -    117593 ATAcaagcttgtccaacctgcggctcacgggctgcatgtggcccaggacagttttgaatgTCAGGACTTTTTTTGCTTATCTGTGGTG
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012101121v1            194699 87 +    273075 ATGcaagcttatctaacccatggctctcgggctgcatgtggtctaggacagctgtgaatgtaaggac-gtttttgcctatctgtggtg
i manLeu1.NW_012101121v1          C 0 N 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e macNem1.NW_012012100v1              4924 93222 +   1495729 I

a score=1294415.000000
s hg38.chr6_GL000254v2_alt         1290932 547 +   4827813 AACCTGAGTCCTGGAGTGAGTGCACCCACCTCCCTCAGGGTCAGGAGTGAATGCTTTAGGAACCCTCCTTTTCAGTGACCTGcaaaagataaagggcacatttactgtgataacccagagtatcagccaagggggcttgaccttcaaggagttgtggggaaggttaataaagggtggtgtcccagggtcagaaaagatgggcagacagcaaggtcactgctt--gatatctatgataagcatgt-ggaattgaggagcaagcttcagattcagaatccagtgactaaggacatatctatatccctaagagaaagaaccttgggacacgatgatggttacatgctgggacaattccatcagcccttctgcaaaggagcctatagccatttaatcaggagatgggataagtattaacattgggtgtgagctgacattgctgcccagattcccacagcaccattatgtcccccatcacactggggcttacagaggccagggaataaacctagacaaattatgccccatggtggaatcaccagttccataaatc
s panTro5.chr6                    30161799 547 + 175400573 CACCTGAGTCCTGGAGTGAGTGCACCCACCTCCCTCAGGGTCAGGAGTGAATGCTTTAGGAACCCTCCTTTTCAGTGACCTGcaaaagataaagggcacatttactgtgataacccagagtatcagccaagggggcttgaccttcaaggagttgtggggaaggttaataaagggtggtgtcccagggtcagaaaagatgggcagacagcaagggcactgctt--gatatctatgataagcatgt-ggaattgaggagcaagcttcagattcagaatccagtgactaaggacatatctatatccctaagagaaagaaccttgggacacgatgatggttacatgctgggacaattccatcagcccttctgcaaaggagcctatagccatttaatcaggagatgggataagtattaacattgggtgtgagctgacattgctgcccagattcccacagcaccattatgtcccccatcacactggggcttacagaggccagggaataaacctagacacattatgccccatggtggaatcaccggttccataaatc
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30392422 547 + 173848474 CACCTGAGTCCTGGAGTGAGTGCACCCACCTCCCTCAGGGTCAGGAGTGAATGCTTTAGGAACCCTCCTTTTCAGTGACCTGcaaaagataaagggcacatttactgtgataacccagagtatcagccaagggggcttgaccttcaaggagttgtggggaaggttaataaagggtggtgtcccagggtcagaaaagatgggcagacagcaagggcactgctt--gatatctatgataagcatgt-gcaattgaggagcaagcttcagattcagaatccagtgactaaggacatatctatatccctaagagaaagaaccttgggacacgatgatggttacatgctgggacaattccatcagcccttctgcaaaggagcctatagccatttaatcaggagatgggataagtattaacattgggtgtgagctgacattgctgcccagattcccacagcaccattatgtcccccatcacactggggcttacagaggccagggaataaacctagacacattatgccccatggtggaatcaccggttccataaatc
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             46543 546 +   2037526 CACCTGAGTCCTGGAGTGAGTGCACCCACCTCCCTCAGGGTCAGGAGTGAATGCTTTAGGAACCCTCCTTTTCAGTGACCTGcaaaagataaagggcacatttactgtgataacccagagtatcagccaagggggcttgaccttcaaggagtcgtggggaaggttaataaagggtggtgtcccagggtcagaaaagatgggcaGACAGCAAGGGCACTTCTT--GATATCTATGATAAGCATGT-GGAATTGAGGAGcaagcttcagattcagaatccagtgactaaggacatatctatatccctaagagaaagaaccttgggacacgatgatggttacatgct-ggacaattccatcagcccttctgcaaaggagcctacagccatttaatcaggagatgggataagtattaacattgggtgtgagctgacattgctgcccagattcccacagcaccattatgtcccccatcacactggggcttacagaggccagggaataaacctagacacattatgccccatggtggaatcaccggttccataaatc
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74727196 548 + 122973662 AACCTGAGTCCTGGAGTGAGTGCACCCACCTCCTTCAGGGTCAGGAGTGAATGCTTTAGGAACCCTCCTTTTCAGTGACCTGCAAAAGATAGAGGGCACATTTACTGTGATAACCCAGAGTATCAGCCAAGGGAGCTTGACCTTCAAGGAGTTGTGGGGAAGTTTATTAAAGGGTCGTGTCCCAGGGTCAGAAAAGATGGGCAGACAGCAAGGGCACTGCTT--GATATCTGTGATAAGCATGTAAGAATTGAGGAGcaagcttcagattcagaatccagtgactgaggaggtatccatatccctaagagaaagaaccttgggacacgatgatggttacatgctgggacaattccatcaccccttctgcaaaggagcctatagccatttactcaggagatggtataagtattaacattgggtgtgagctgacattgctgcccagattcccacagcaccgttatgcctcccatcacagtggggcttacagaggccagggaataaacctagacacgttatgccccatggtggaatcactggttccataaacc
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30549376 549 + 172585720 AACGTGAGACCTGAAGTGAGTGCACCCACCTCCCTCAGGGTCAGGAGTGAATGCTTTGGGAACCCTCCTTTgcagtgacctgcaaaagatagagagcacatttactgtgataacccagagtatcagccaaaggggcttgaccttcaaggagttgtggggaagattaataaaggatggtgtcccagggtcagaatagatgggcagccagcaagggcgctgcttcatatatctatgataagcatgcaagaattgaggagcaagtttcagattcagaatccagtgactgaggaggtatccatatccctaaaagaaagaaccttgcgacaccatgacagttacatgctgggacaattccatcagcccttctgcaaaggagcctatagccatttaatcaggagatggtataagtattaacactgggtgtgagctgacattgctgcccagattcccacagcaacattatgtcg-ccatcacagtggggcttacagaggccgaggaataaacctggacacattatgacccacagtggaatcactgggtccataaacc
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      173188 542 +    231697 AACGTGAGACCTGGAGTGAGTGCACCCACCTCCCTCAGGGTCAGGAGTGAATGCTTTAGGAACCCTCCTTTGCAGTGACCTGCAAAAGATAGAGAGCACATTTACTGTGAGAACCcagagtatcagccaaaggggcttgaccttcaaggagttgtggggaagattaataaaggatggtgtcccagggtcagaacagatgggcagccagcaagggcgctgcttCATATATCTATGATAAGCATGCAAGAATTGAGAagcaagtttcagattcagaatccagtgactgaggaggtatccatatccctaaaagaaagaaccttgtgacaccatgacagttacatgctgggacaattccatcagcccttctgcaaagg-------agccatttaatcaggagatgatataagtattaacactgggtgtgagctgacattgctgcccagattcccacagcaccattatgtcg-ccatcacagtggggcatacagaggctgaagaataaacctggacacattatgacccacagtggaatcactgggtccataaacc
i macFas5.chr4_KE145577_random    C 0 C 0
s chlSab2.chr17_KE148042v1_random    58862 548 -    117593 AACGTGAGACCTGGAGTGAGTGCACCCACCTCCCTCAGGGTCAGGAGTGAATGCTTTAGGAACCCTCCTTTgcagtgacctgcaaaagatagagagcacatttactgtgataacccagagtatcagccaaaggggcttgaccttcaaggagttgtggggaagatgaataaaggatggtgtcccagggtcagaacagat-ggcagccagcaagggcgctgcttCATATATCTATGATAAGCATGCAAGAATTGAAGAGcaagcttcagattcagaatccagtgactaaggaggtatccatatccctaaaagaaagaaccttgcgacaccatgacagttacatgctgggacaattccatcagcccttctgcaaaggagcctatagccatttaatcaggaaatggtataagtattaacactgggtgtgagctgacattgctgcccagattcccacagcaccattatgtcg-ccatcacagtggggcttacagaggccgaggaataaacctggacacattatgacccacagtggaatcactgggtccataaacc
i chlSab2.chr17_KE148042v1_random C 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e cerAty1.NW_012002535v1            195254 11873 -    863181 I
e macNem1.NW_012012100v1              4924 93222 +   1495729 I

a score=5574561.000000
s hg38.chr6_GL000254v2_alt         1291479 1853 +   4827813 ctgtcctggttatctccccattctctgagtgcataattggccttgatgcactggcaactggagtcaccccacactgtgtccctagtctggagagtaagggatctcattgtgctgaagcccaaagggaaacatccctcatacaagccaaaccagaagcaatattgtgccccagggtgggtcttgtggagggtactgcaggtattataggggtggcactgccattacagacctgaacgatgcggggtgttgttgggattgcctgttatctccatataactcagcaatctgtacctgcagaagcctgatatggctaaagaatgaatggaattactccagacttgaccaagtaggagtcctgattgcagctgccatgctggctggatatcactgcctggggagattaataaggcctcaggcacatggcaagcagctgtggatttggtgagtgcattccctcccatttcatttagaagatggatatggaatgattcacattcacatgggatttataatacatttattgatagcttgcatcagggctaccttaactcctcaaccttctataaatatcaccttaagagacctggacaaatcagacatcccaatgaatactaaatctcttcatttcattggcaatatcacataaattgggaaggatgaacaacagcaggaaagtacgctgaattccctggcaaaacatgtgcactacagaaggtgaagataaaccttacagagcttcaagagtggccactgcagtgaagtgttatgggtccagtggttaggggcatgcagagctccccgcccccc-ccccaccacaaagtaaaagacaaacttgcatcttgcatcctcaccagaaggaaggaa---gcacactacttgatgagcctctctgggttctggcaacaccacattccacatctaagtttattgctttggctgacactctgggtgatataggaggaggccagctttgagtggggcctggactggaaaggacactgcagcagacccaggctgtggtgcagtcagtcaccatccctcagacccctggtgctggaggtggcggtctggggaaagaagcaggatggagctcaaccaagcatcagtgggaaagtcagaatgcagggcctgggatcaggagtaaggccatggagtccacagcagagaaacatgctccatgttagaagcaacttttagcatgttactggccctgataagatagaatgcttgcgcataggacaccaagcaaccatgtgattccaagtgcccgtgtgtattggcttctatgtgacccatagagtcattcattggacaggcccagcggcatctatcatgagacgaaaatggtccatgtcggttgagcCTCAATTCcatgttaacacccacagaaaacacccagt-cctgatgtggccctgaataatcaaacaaattgaagacaaattgaagttagccagtctgcatcatggatcagcccaggcctgataggaagaacccatgagtggagcaaccacagtggcaagaatgaggctacaaatgagtccagcagcactgtctctccactaccaaggcccacccagctactgcttcctctgaatactctgctcatgagcattgcagaccaatgataggcactgatagggcaccatttcttaaagtaactgactagcccctaagtgacaagttgaatagcttgaacaccatccatcctggaaggggcagaagtttatcctcacagggataggctcacagggattcgatgtggtgtggttttcctctctgctctcagaccctcagtcaacactactattggcattcctgatccactggctcagaatttcagtacattatctgcctgg
s panTro5.chr6                    30162346 1842 + 175400573 ctgtcctggttatctccccattctctgagtgcataattggccttgatgcactggcaactggagtcaccccacactgtgtccctagtctggagagtaagggatctcattgtgctgaagcccaaagggaaacatccctcatccaagccaaaccagaagcaatattgtgccccagggtgggtcttgtggagggtactgcaggtattataggggtggcactgccattacagacctgaacgatgcagagtggtgttgggattgcctgttatctccatataactcagcaatctgtacctgcagaagcctgatatggctaaagaatgaatggaattactccagacttgaccaagtaggagtcctgattgcagctgccatgctggctggatatcactgcctggggagattaatacagcctcaggcacatggcaagcagctgtggatttggtgagtgcattccctcccatttcatttagaagatggatatggaatgattcacattcacatgggatttataatacatttattggtagcttgcatcagggctaccttaactcctcaaccttctataaatatcatcttaagagacctggacgaatcagacatcccacagaatactaaatctcttcatttcattggcaatatcacataaattgggaaggatgaacaacagcaggaaagtatgctgaattccctggcaaaacatgtgcactacagaaggtgaagataaaccttacagagcttcaagagtggccactgcagtgaagtgttatgggtccagtggttaggggcatgcagagctcccccctcc------------aaagtaaaagacaaacttgcatcttgcatcctcaccagaaggaaggaa---gcacactacttggtgagcctctctgggttctggcaacaccacattccacatctaagtttattgctttggctgacactctgggtgatataggaggaggccagctttgagtggggcctggactggaaaggacactgcagcagacccaggctgtggtgcagtcagtcaccatccctcagacccctggtgctggaggtgacggtctgcggaaagaagcaggatgaagctgaaccaagcatcagtgggaaagtcagaatgcagggcctgggatcaggagtaaggccatggagtccacagcagagaaacatgctccatgttagaagcaacttttagcatgttactggccctgataagatagaatgcttgagcataggacaccaagcaaccatgtgattccaagtgcccgtgtgtattggcttctatgtgacccatagagtcattcactggacaggccccttggcatctatcatgagacaaaaatggtccatgtcggttgagcCTCAATTCcatgttaacacccacagaaaacacccagt-cctgatgtggccctgaataaccaaacaaattgaagacaaattgaagttagccagtctgcatcatggatcagcccaggcctgataggaaggacccgtgagtggagcaaccacagtggcagggatgaagctacaaatgagtccagcagcactgtctctccactaccaaggcccacccagctactgcttcctctgaatactctgctcgtgagcattgcagaccaatgataggcaccgatagggcactatttcttaaagtaactgactagcccctaagtgacaagttgaatagcttgaacaccatccatcctggaaggggcagaagttcatcctcacagggataggctcacagggattcaatgtggtgtggttttcctctctgctctcagaccctcagtcaacaacactgttggcattcctgatccactggctcagaatttcagtagattatctgcctgg
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30392969 1852 + 173848474 ctgtcctggttatctccccattctctgagtgcataattggccttgatgcactggcaactggagtcaccccacactgtgtccctagtctggagagtaagggatctcattgtgctgaagcccaaagggaaacatccctcatccaagccaaaccagaagcaatattgtgccccagggtgggtcttgtggagggtactgcaggtattataggggtggcactgccattacagacctgaacgatgcagagtggtgttgggattgcctgttatctccatataactcagcaatctgtacctgcagaagcctgatatggctaaagaatgaatggaattactccagacttgaccaagtaggagtcctgattgcagccgccatgctggctggatatcactgcctgcggagattaataaggcctcaggcacatggcatgcagctgtggatttggtgagtgcattccctcccatttcatttagaagatggatatggaatgattcacattcacatgggatttataatacatttattgatagcttgcatcagggctaccttaactcctcaaccttctataaatatcaccttaagagacctggacgaatcagacatctcacagaatactaaatctcttcatttcattggcaatatcacataaattgggaaggatgaacaagagcaggaaagtacgctgaattccctggcaaaacatgtgcactacagaaggtgaagataaaccttacagagcttcaagagtggccactgcagtgaagtgttatgggtccagtggttaggggcatgcagagctcccccctccccaccccacc--aaagtaaaagacaaacttgcatcttgcatcctcaccagaaggaaggaa---gcacactacttggtgagcctctctgggttctggcaacaccacattccacatctaagtttattgctttggctgacactctgggtgatataggaggaggccagctttgagtggggcctggactggaaaggacactgcagcagacccaggctgtggtgcagtcagtcaccatccctcagacccctggtgctggaggtgacggtctgcggaaagaagcaggatggagctgaaccaagcatcagtgggaaagtcagaatgcagggcctgggatcaggagtaaggccatggagtccacagcagagaaacatgctccatgttagaagcaacttttagcatgttactggccctgataagatagaatgcttgagcataggacaccaagcaaccatgtgattccaagtgcccgtgtgtattgacttctatgtgacccatagagtcattcactggacaggcccagcagcatctatcatgagacgaaaatggtccatgtcggttgagcCTCAATTCcatgttaacacccacagaaaacacccagt-cctgatgtggccctgaataaccaaacaaattgaagacaaattgaagttagccagtctgcatcatggatcagcccaggcctgataggaaggacccgtgagtggagcaaccacagtggcagggatgaagctacaaatgagtccagcagcactgtctctccactaccaaggcccacccagctactgcttcctctgaatactctgctcgtgagcattgcaggccaatgataggcaccgatagggcactatttcttaaagtaactgactagcccctaagtgacaagttgaatagcttgaacaccatccatcctggaaggggcagaagttcatcctcacagggataggctcacagggattcgatgtggtgtggttttcctctctgctctcagaccctcagtcaacaacactattggcattcctgatccactggctcagaatttcagtagattatctgcctgg
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             47089 1851 +   2037526 ctgtcctggttatctccccattctctgagtgcataattggccttgatgcactagcaactggagtcaccccacactgtgtccctagtctggagagtaagggatctcattgtgctgaagcccaaagggaaacatccctcatccaagccgaaccagaagcaatattgtgccccagggtgggtcttgtggagggtactgcaggtattataggggtagcactgccattacagacctgaacgatgcagggtggtgttgggattgcctgttatctccatataactcagcaatctgtacctgcagaagcctgatatggctaaagaatgaatggaattactccagacttgaccaagtaggagtcctgattgcagctgccatgctggctggatatcactgcttggggagattaataaggcctcaggcacatggcaagcagctgtggatttggtgagtgcattccctcccatttcatttagaagatggatatggaatgattcacattcacatgggatttataatacatttattgatagcttgcatcagggctaccttaactcctcaaccttctataaatatcaccttaagagacctggacgaatcagacatctcacagaatactaaatctgttcatttcattggcaatatcacataaattgggaaggatgaacaacagcaggaaagtatgctgaattccctggcaaaacatgtgcactacagaaggtgaagataaaccttacagagcttcaagagtggccactgcagtgaagtgttatgggtccagtggttaggggcatgcagagctccccccac----gcccaccacaaagtaaaagacaaacttgcatcttgcatcctcaccagaaggaaggaa---gcacactacctgatgagcctctctgggttctggcaacaccacattccacatctaagtttattgctttggctgacactctgggtgatataggaggaggccagctttgagtggggcctggactggaaaggacactgtagcagacccaggctgtggtgcaatcagccaccatccctcagacccctggtgctggaggtggcggtctggggaaagaagcaggatggagctgaaccaagcatcagtgggaaagtcagaatgcagggcctgggatcaggagtaaggccatggagtccacagcagagaaacatgctccatgttagaagcaacttttagcatgttactggccctgataagatagaatgcttgcgcataggacaccaagcaaccatgtgattccaaatgcccgtgtgtattggcttctatgtgacccatagagtcattcattggacaggcccagcggcatctatcatgagacgaaaatggtccatgtcggttgagcCTCAATTCcatgttaacacccacagaaaacaccctgtgggtgatgtggccctgaataatcaaacaaattgaagacaaattgaagttagccagtctgcatcatggatcagcccaggcctgataggaaggacccatgagtggagcaaccacagtggcaagaatgaggctacaaatgagtccagcagcactgtctctccactaccaaggcccacccagctactgcttcctctgaatactctgctcatgagcattgcagaccaatgataggcaccgatagggcactatttcttaaagtaactgactagcccctaagtgacaagttgaatagcttgaacaccatccatcctggaaggggcagaagttcatcctcacagggataggctcacagggattcgatgcggtgtggttttcctctctgctctcagaccctcagtcaacactactattggcattcctgatccactggctcagaatttcagtatattatctgcctgg
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74727744 1834 + 122973662 ctgtcctggttatctccccattctctgagtgcataattggccttcatgcactggcaactggagtcaccccacactgtgtccctagtctggagaataagggatctcatggtgctgaagcccaaagggaaacatccctcatccaagccaaaccagaagcaatattgtgccccagggtgggtcttgtggagggtactgcaggtattataggggtggcactgccattacagacctgaacgatgtggggtggtgttgggattgcctgttatctccatataactcagcaatctgtacctgcagaagcctgatatggctaaagaatgaatggaattactccagacttgaccaagta-gagtcctgactgcagctgccatgctggctggatatcactgcctggggagattaataaggccccaggcacatggcaagcagctgtggatctggtgagtgcattccttcccactccatttagaagatggatatggaatgattcacattcacaagggatttataatacatttatcaatagcttgcatcagggctaccttaactcctcaaccttctataaatatcaccttaagagacctggacgaatcagacatctcacagaatactaaatctcttcatttcattggcaatatcacatacattgggaaggatgaacaagagcaggaaagtacgctgaattccttggcaaaacatgtgcactacagaaggtgaagataaaccttacagagcttcaagagtggccactgcagtgaactgttacgggtccagtggttaggggcatgcagagttctcccttcc------------aaagtaaaagacacacttgcatcttgcatcctcaccagaaggaaggaa---gcacactacttggtgagcctctctgggttctggcaacgccacattccacatctaagtatattgctttggctgacactctgggtgatat---aggaggccagctttgagtggggcctggactggaaaggacactacagcagacccaggctgtggtacagtcaatcaccatccctcagacccctggtgctggaggtggctgtgtggggaaagaagtaggatggagctgaaccaagcatcagtgggagagtcagaatgcagggcctgggatctggagtaaggccatggagtccacagcagagaaacatgctgcctgttagaagcaacttttagcatgttactggccctgataagacagaatccttgatcatgggacaccaagcaatcatgtgattccaagtgctcgtgtgtattggctccaatgtgacccatagcgtcatagattggacaggcccaacggcatctatcatgagatgaaaatagtccatgtcggttgagcCTCAATTCcacgttaacacccacagaaaacacccagt-cctgatgtggccctgaataaccaaacaaattgaagacaaattgaagttagccagcccgcatcatggatcagcccaggcctgataggaaggacccgtgagtggagcaaccacagtggcagggatgaagctacaaatgagtccagcagcactgtgtctccgctaccaaggcccacccggctactgcttcctctgaatactctgctcgtgagcatttcagaccaatgataggcaccgatagggcactatttcttaaagtaactgactagaccctaagtgacaagttgaatagcttgaacaccatccatcctggaaggggcagaagttcatcctcacagggataggcactt----attcgatgtggtgtggttttcctctctgctctcagaccctcagtcaacaacactactggcattcctgatccactggctcagaatttcagtacattatctgcctgg
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30549925 1830 + 172585720 ctgtcctggttatctccccattctccaagtgcataattggccttgatgcact--caacaggagtcaccccacactgtgtccctagtctggagagtaagcgctctcattgtgctaaagcccaaagggaaacatccctcatccaagccaaaccagaagcaataatttgccccagggtgggtcttgtggagggtactgcaggtatcgtaggggtagcaccgccattagagagctgaaggatgcggggtggtgttgggattgcctgtaatctccatataactcagcaatctatccctgaagaagcctgatacggctaaagaatgaatggaattactccagactcgaccaagtaggagtcctgattgcagctgctatactggctggatatcactgcttggggagattaataatgcctcagtcacatggcaagcagctgtggatttggtgagtgcattccctcccatttcatttagaagatggaaatggaatgattcacacttacatgggatttataatacatttattgatagcttgcctcagggctaccttaactcctcaaccttctataaatatcgccttgagagacctggacaaatcaaatatctcacagaatactacatctgctcatttcattggcaatatcacataaattgggatggatgagcaagaggaggaaagtacgctgaattccttggcaaaacacgtgcactatggaagatgaagataaacctcacagagcttcaagagtggccactgcagtgaagtgttatgggtccagtggttacaggcatgcagggctctcccctcc------------aaagtaaaagacacacttgcatcttgcatcctcaccagaagaaaggat---gcacactgcctggagagcctcgctgggttctgggaacaccacattccacatctaagtatatttctttggcccacactctgggtgatataggaggaggccagctttgagtggggcctggacaggaaaggacactgctgcagacccaggctgtggtgcagccagtcaccatccctcagacccctggtgctggaggtggcagtttggtgaaagatgcaggatggagctgaaccaagcattagcggg--agtcagaatggagggcctgggatctggagtaaagccatggaatccacagcagagaaacatgctccctgttagaagcaacttttagcatgttcctggccctgataagatagaatgcttgatcatgggacaccaagcaacc-tgtgattccaagtgcccttgtgtattggcttctatgtgacccacagagtcatagattggacagacccagcggcatctatcatgagatgaaaatggtccatgtgggttgagcCTCAATTCcatgttaacacccacagaaaacacccagc-cctgacgtggccctgaatcaccaaacaaattgaagataaattgaagttagccagtccacatcatggatcagcccaggcctgataggaaggacccatgagtggagcagccacagtggtagggatgaagctacaaatgagtccagcagcactgactgctccctactaataccaatccagctattgcttccactgaatactctgcttgtgagcattacagacca---atgggcaccgatagggcactatttcttcaggtaactgactagcccctaagtgacaagttgaatagcttgaaccccatccatcctggaaggggcagaagttcatcctcacagggacaggcacct----attcgatgtggtatggttttcctttctgctctcagaccctcagccagcgtccctattggaattcctgatccactggctcagaatttcagtacattatctgcctgg
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      173730 1830 +    231697 ctgtcctggttatctccccattctccaagtgcatgattggccttgatgcact--caacaggagtcaccccacactgtgtccctagtctggagagtaagggctctcattgtgctaaagcccaaagggaaacatccctcatccaagccaaaccagaagcaatattgtgccccagggtgggtcttgtggagggtactgcaggtattgtaggggtagcactgccattagagagctgaaggatgcggggtggtgttggggttgcctgtaatctccatataactcagcaatctgtccctgaagaagcctgatatggctaaagaatgaatggaattactccagactcaaccaagtaggagtcctgattgcagctgccatactggctggatatcactgcttggggagattaataatgcctcaggcacatagcaagcaactgtggatttggtgagtgcattccctctcatttcatttagaagatggaaatggaatgattcacactcacgtgggatttataatacatttattgaaagcttgcctgagggctaccttaactcctcaaccttctataaatgtcgccttgagagacctggacaaatcaaatatctcacagaatactacatctgctcatttcattgacagtatcacataaattgggatggatgagcaagaggaggaaagtatgctgaattccttggcaaaacacatgcactatggaaggtgaagataaacctcacagagcttcaagagtggccactgcagtgaagtattatgtgtccagtagttacaggcatgcagggctctcccctcc------------aaggtaaaagacacacttgcatcttgcatcctcaccagaaggaaggat---gcacactgcctggtcagcctctctgggttctgttaacaccacattccacatctaagtatatttctttggcccacactctgggtaatataggaggaggccagctttgagtggggcctggacaggaaaggacactgccgcagacccaggctgtggtgcagccagtcaccatccctcagacccctggtgctggaggtggcagtttggggaaagatgcaggatggagctgaaccaagcattagtggg--agtcagaatggagggcctgggatctggagtaaagccatggaatccacagcagagaaacatgctccctgttagaagcaacttttagcatgttcctggccctgataagatagaatgcttgatcatgggacaccaagcaacc-tgtgattccaagtgcctgtgtgtactggcttctatgtgacccatagagtcatagattggacagacccagcgggatctatcatgagatgaaaatggtccatgtgggttgagcCTCAATTCcatgttaacacccacagaaaacacccagt-cctgacgtggccctgaataaccaaacaaattgaagataaattgaagttagccagtccacatcatggatcagcccaggcctgataggaaggacccatgagtggagcaaccacagtggtagggatgaagctacaaatgagtccagcagcactgactgccccctactaataccaatccagctactgcttccactgaatactctgcttgtgagcattacagacca---atgggcaccgatagggcactatttcttcaggtaactgactagcccctaagtgacaagttgaatagcttgacccccatccatcctggaaggggcagaagttcatcctcacagggataggcacct----attcgatgtggtgtggttttcctctctgctctcagaccctcagccagcgtccctattagaattcctgatcccctggctcagaatttcagtacattatctgcctga
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            207127 1832 -    863181 CTGTCCtggttatctccccattctccaagtgcataattggccttgatgcact--caacaggagtcaccccacactgtgtccctagtctggagagtaagggctctcattgtgctaaagcccaaagggaaacatccctcatccaagccaaaccagaagcaatactgtgccccagggtgggtctggtggagggtactgcagctattgtaggggtagcaccaccattagagagctgaaggatgcggggtggtgttgggattgcctgtaatctccatataactcagcaatctgtccctgaagaagcctgatatggctaaagaatgaatggaattcctccagacgtgaccaactaggagtcctgattgcagctgccatactggctggatatcactgcttggggagattaataatgcctcagtcacatggcaagcagctgtggatatggtgagtgcattctctcccatttcatttagaagatggaaatggaatgattcacacttacatgggatttataatacgtttattgatagcttgcctcagggctaccttaactcctcaaccttctataaatatcgccttgagagacctggacaaatcaaatatctcacggaatactatatctgctcatttcattggcaatatcacataaattgggaaggatgagcaagaggaggaaagtacaccaaattccttggcaaaacacgtgcactgtggaaggtgaagataaacctcacagagcttcaagagtggccactgcagtgaagtgttatgggtccagtggttacaggcatgcagggctctcccctcc------------aaagtaaaagacacacttgcatcttgcatcctcaccagaaggaaggat---gcacactgcctggtaagcctctctggattctggcaacaccacattccacatctaagtatattgctttggcccacactctgggtgatataggaggaggccagttttgagtggggcctggtcaggaaaagacactgccgcagacccaggctgtggtgcagccagtcaccatccctcag-cacctggtgctggaggtggcagtttggggaaagatgcaggatggagctgaaccaagcatcagtggg--agtcagaatggagggcctgggatcagaagtaaggtcatggaatccacagcagagaaacatgctccttgttagaagcaacttttagcatgttcctggccctgataagatagaatgcttgatcatgagacaccaagcaacc-tgtgattccaagtgcccttgtgcattggcttctatgtgacccatagagtcatagattggacagacccagcggcatctatcatgagatgcaaatggtccatgtaggttgagcCTCAATTCcatgttaacacccacagaaaacacccagc-cctgacgtggccctgaatcaccaaacaaattgaagataaattgaagttagccagtccgcatcatggatcagcccaggcctgataggaaggacccatgagtggagcaaccacagtggtagggatgaaaatacaaatgagtccagcagcactgactgccccctactaataccaatccagctactgcttccactgaatactctgcttgtgagcattacagaccaatgatgggcaccgatagggcactatttcttcaggtaactgactagccactaagtgacaagttgaatagcttgaaccccatccatcctggaaggggcagaagttcatccacacagggataggcacct----attcgatgtggtgtggttttcctctctgctctcagaacctcagccagcgtccctattggaattcctgatccactggctcagaatttcagtaccttatctgcctgg
i cerAty1.NW_012002535v1          I 11873 C 0
s chlSab2.chr17_KE148042v1_random    59410 1833 -    117593 ttgtcctggttatttccccattctccaagtgcataattggccttgatgcact--caacaggagtcaccccacactgtgtccctagtctggagagtaagagctctcattatgctaaagcccaaagggaaacatccctcatccaagccaaaccagaagcaatattgtgccccagggtgggtcttgtggagggtactgcaggtatcgtaggggtagcaccgccattagagagctgaaggatgcggggtggtgttgggattgcctgtaatctccgtataactcagcaatctgtccctgaagaagcctgatatggctaaagattgaatggaattactccagactcgaccaagtaggagtcctgattgcagctgccatactggctggatgtcactgcttggggagattaataatgcctcagtcatatggcaagcagctgtggatttggtgagtgcattccctcccatttcatttagtagatggaaatggaatgattcacacttacatgggatttataatacatttattgatagcttgcctcaggactaccttaactcctcaaccttctataaatgtcgccttgagagacctggacaaatcaaatatctcacagaatactacatctgctcatttcattgtcaatatcacataaattg----ggatgagcaagaagaggaaagtacgctgaattccttggcaaaacacgtgcactatggaaggtgaagataaacctcacagagcttcaagagtggccactgcagtgaggtgttatgggtccagtggttacaggcatgcagagctctcccctcc------------aaagtaaaagacacacttgcatcttgcatcctcaccacaaggaaggacgcagcacactgcctggtaagcctctctgggttctgtcaacaccacattccacacctaagtacattgctttggcccacactctgggtgaaataggaggaggccagttttgagtggggcctggacaggaaaggacactgcagcagacccagactgtggtgcagtcagtcaccatccctcagacccctggtgctggaggtggtgatgtggggaaagatgcaggatggagctgaaccaagcatcagtggg--agtcagaatggagggcctgggatctggagtaaggccatggaatccacagcagagaaacatgctccctgttagaagcaacttttagcatgttcctggccctgataagataaaacgcttgatcatgggacaccaagcaaccttgtgattctaagtgcccaaatgtattggcttctatgtgtcccatagagtcatagatgggacaggcccagcggcatctatcatgagatgaaaatggtccatgtggattgagcCTCAATTCcatgttaacacccacagaaaacacccagc-cctgacgtggccctgaatcaccaaacaaattgaagataaattgaagttagccagtccacatcatggatcaacccaggcctgataggaaagatccatgagtggagcaaccacagtggtagggatgaagctacaaatgagtccagcagcactgactgccccctactaataccaatccagctgctgcttccactgaatactctgcttgtgagcattacagaccaatgataggcaccgatagggcactatttcttcaggtaactgactagcccctaagtgacaagttgaacagcttgaaccccatccatcctggaaggggcagaagttcatcctcacagggataggcacct----attcgatgtggtgtggttttcctctctgctctcagaccctcagccagcgtccctattggaattcctgatccactggctcagaatttcagtacattatctgcctgg
i chlSab2.chr17_KE148042v1_random C 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e macNem1.NW_012012100v1              4924 93222 +   1495729 I

a score=1030969.000000
s hg38.chr6_GL000254v2_alt         1293332 342 +   4827813 gggacacacctcttggagaagaggatgaagtgtgggtcctgaccatgggatcccctggtcgtatcaccacctgcgcctctcaagtgctgccaggcacaca-gagtcatggacaggactctacaggcacaactcagtaccagcttggatgaaatcctctgaggaatg-ggtgccatctttcaggatgtgatgcatgtattgaatcaaagacgtctctaaggcac--tgttttcagaaggaagaatacgtgggtccaaaaaccaagaagtcaaagcaggtgtgtctcattccttatattcacccccagggtgatttacttataagtaaataaataaatacataaataa
s panTro5.chr6                    30164188 340 + 175400573 gggacacacctcttggggaaggggatgaagtgtgggcccttaccatgggatcccctggtcatatcaccacctgcgcctctcaagtgctgccaggcacaca-gagtcatggacaggactctacaggcacaactcagtaccagcttggatgaaaccctctgaggaatg-ggtgccatctttcaggatgtgatgcatgtattgaatcaaagacgtctcttaggca----gttttcagaaggaagaatacgtgggtccaaaaaccaagaagtcaaagcaggtgtgtctcattccttatattcacccccagggtgatttacttataagtaaataaataaatacataaataa
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30394821 342 + 173848474 gggacacacctcttggggaaggggatgaagtgtgggccctgaccatgggatcccctggttgtatcaccacctgcgcctctcaagtgctgccaggcacaca-gagtcatggacaggactctacaggcacaactcagtaccagcttggatgaaaccctctgaggaatg-ggtgccatctttcaggatgtgatgcatgtattgaatcaaagacgtctcttaggcac--tgttttcagaaggaagaatacgtgggtccaaaaaccaagaagtcaaagcaggtgtgtctcattccttatattcacccccagggtgatttacttataagtaaataaataaatacataaataa
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             48940 338 +   2037526 gggacacacctcttggggaaggggatgaagtgtgggccctgaccatgggatcccctggtcgtatcaccacctgcacctctcaagtgctgccaggcacaca-gagtcatggacaggactctacaggcacaactcagtaccagcttggatgaaaccctctgaggaatg-ggtgccatctttcaggatgtgatgcatgtattgaatcaaagacgtctctaaggcac--tgttttcagaaggaagaatatgtgggtccaaaaaccaagaagtcaaagcaggtgtgtctcattccttatattcacccccagggtgatttactTataag----taaataaatacataaataa
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74729578 340 + 122973662 gggacacacctcttggggaaggggatgaagtgtgggccatgaccatgggatcccctggtcatatcaccacctgcgcctctcaggtgctgccagg--caca-gagtcatggacaggactctacaggcacaactcagtaccagcttggatgaaaccctctgaggaatg-ggtgccatctttcaggatgtgatgcatgtattgaatcaaagacgtctccatggtgc--tgttttcagaaggaagaatacgtgggtccaaaaaccgagaagtcaaagcaggtgtgtctcattccttatgttcacccccagggtgatttatttataagtaaataaataaatacataaataa
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30551755 340 + 172585720 gggacatacctcatggggaaggggatgaagcatgggccatgaccataggatcccctggtcatatcaccacctgtgcctctcagatcctgccaggcacacaggagtcatggacaggaccctgcaggcacaactcactaccagcttggatgaagccctctgaggaatg-ggtgtcatttttcaggatgtgatacatgcgttgaatcaaagacatctctgtggtgc--tgttttcaa--ggcagaacacgtgggtcc-aaaaccgagaagtcgaagcaagtgtgtctcattccttatATTCACCCCCAGGGTGATTGATTTATTTataagtaaataaatacataaataa
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      175560 342 +    231697 gggacacacctcatggggaaggggatgaagcatgggccatgaccatgggattccctggtcatatcaccacctgtgcctctcagatcctaccaggcacacaagagtcatggacaggaccctacaggcacaactcactaccagcttggatgaagccctctgaggaatg-ggtgtcatttctcaggatgtgatacatgcattcaatcaaagacatctctatggtgc--tgttttcagacggcggaacacgtgggtcc-aaaaccgagaagtcgaagcaagtgtgtctcattccttatattcacccccaGAGTGATTGATTTAGTTataagtaaataaatacataaataa
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            208959 342 -    863181 gggacacacctcatggggaaggggatgaagcatgggccatgaccatgggatcccctggtcatatcaccacctgtgcctctcagatcctgccaggcacacaagagtcatggacaggaccctgcaggcacaactcactaccagcttggatgaaaccctctgaggaatg-ggtgtcatttttcaggatgTGATACATGTATTGAATCAAAGACATCTCTGTGGTGC--TGTTTTCAGAAGGCAGAACACGTGGGTCC-AAAACCAAGAAGTCGGAGCAAGTGTGTCTCATTCCTTATATTCACCCCCAGGGTGATTGGTTTAGTTataagtaaataaatacataaataa
i cerAty1.NW_012002535v1          C 0 I 15
s chlSab2.chr17_KE148042v1_random    61243 342 -    117593 gggacacacctcatggggaaggggatgaagcgtgggccatgaccatgggatcccctggtcatatcaccacctgtgcctctcagatcctgccaggcacacaagagtcatggacaggaccctacaggcacaactcactagcagcttggatgaaaccctctgaggaatg-ggtgtcatttttcaggatgtgatacatgcattgaatcaaagacatctctgtggtgc--tatcttcagaaggcagaatacgtgggtcc-aaaaccaagaagtcgaagcaagtgtctctcattccttatattcacccctaGGGTGATTGATTTATTTataagtaaataaatacataaataa
i chlSab2.chr17_KE148042v1_random C 0 C 0
s otoGar3.GL873550                17397014 234 -  18854210 gggacccacttcacagggaaggaggtacagccttgtccatggccat--gacccaccggtcataccacagtctgcaccacccagg-------------------------------------------------------aAATTAGAGGAAATTCTCTGAGGGGGGAGGCGTCCTCTTTCAGGACAC-AGAGACTTGTTGAACCagagacctccctacagtgctgtgttctcagtaggaggagcatgtgggtccagaaaccaagggatggaagcgggtgtggct-----------------ccatgggc-------------------------------------
i otoGar3.GL873550                N 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e macNem1.NW_012012100v1              4924 93222 +   1495729 I

a score=3600.000000
s hg38.chr6_GL000254v2_alt         1293674 1 +   4827813 c
s panTro5.chr6                    30164528 1 + 175400573 c
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30395163 1 + 173848474 c
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             49278 1 +   2037526 c
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74729918 1 + 122973662 c
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30552095 1 + 172585720 c
i rheMac8.chr4                    C 0 I 15
s macFas5.chr4_KE145577_random      175902 1 +    231697 c
i macFas5.chr4_KE145577_random    C 0 C 0
s chlSab2.chr17_KE148042v1_random    61585 1 -    117593 c
i chlSab2.chr17_KE148042v1_random C 0 C 0
s otoGar3.GL873550                17397248 1 -  18854210 c
i otoGar3.GL873550                C 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e cerAty1.NW_012002535v1            209301 15 -    863181 I
e macNem1.NW_012012100v1              4924 93222 +   1495729 I

a score=9916.000000
s hg38.chr6_GL000254v2_alt         1293675 43 +   4827813 atcaatacataaataaatttat----------------gcatgtatgtatgtacgtatg
s panTro5.chr6                    30164529 59 + 175400573 atgagtacataaataaatttatttatgcatgtatgtatgtatgtatgtatgtatgtatg
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30395164 59 + 173848474 atgagtacataaataaatttatttatgcatgtatgtatgtatgtatgtatgtatgtatg
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             49279 43 +   2037526 atcaacacataaataaatTtat----------------gcatgtatgtatgtacgtatg
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74729919 59 + 122973662 atgaatacataaataaatttgtttacacatgtatttatttatttatttatttatttatt
i nomLeu3.chr1a                   C 0 C 0
s macFas5.chr4_KE145577_random      175903 15 +    231697 ----ataaatgaaagaatt----------------------------------------
i macFas5.chr4_KE145577_random    C 0 C 0
s chlSab2.chr17_KE148042v1_random    61586 23 -    117593 ----ataaataaaAGAatttatttatt--------------------------------
i chlSab2.chr17_KE148042v1_random C 0 C 0
s otoGar3.GL873550                17397249  6 -  18854210 --------atcact---------------------------------------------
i otoGar3.GL873550                C 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e cerAty1.NW_012002535v1            209301 15 -    863181 I
e macNem1.NW_012012100v1              4924 93222 +   1495729 I
e rheMac8.chr4                    30552096 15 + 172585720 I

a score=51052.000000
s hg38.chr6_GL000254v2_alt         1293718 19 +   4827813 tatgtatgtattttattca
s panTro5.chr6                    30164588 19 + 175400573 tatgtatgtattttattca
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30395223 19 + 173848474 tatgtatgtattttattca
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             49322 19 +   2037526 tatgtatgtatTTTATTCA
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74729978 19 + 122973662 tatttatttattttattca
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30552111 19 + 172585720 tatttatttattttattca
i rheMac8.chr4                    I 15 C 0
s macFas5.chr4_KE145577_random      175918 19 +    231697 tatttatttattttattca
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            209316 19 -    863181 tatttatttattttattca
i cerAty1.NW_012002535v1          I 15 C 0
s chlSab2.chr17_KE148042v1_random    61609 19 -    117593 tatttattttatttattca
i chlSab2.chr17_KE148042v1_random C 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e otoGar3.GL873550                17397255  0 -  18854210 C
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e macNem1.NW_012012100v1              4924 93222 +   1495729 I

a score=296542.000000
s hg38.chr6_GL000254v2_alt         1293737 73 +   4827813 ttatattcacccccagggtgattttgctcctcttacttcca-aaatctggactctgcagggtaggaggtcctgg
s panTro5.chr6                    30164607 73 + 175400573 ttatattcaccctcagggtgattttgctcttcttacttcca-aaatctggactctgcagggtaggaggtcctgg
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30395242 73 + 173848474 ttatattcaccctcagggtgattttgctcttcttacttcca-aaatctggactctgcagggtaggaggtcctgg
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             49341 73 +   2037526 TTATATTCacccccagggtgattttgctcttcttacttcca-aaatctggactctgcagggtaggaggtcctgg
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74729997 73 + 122973662 ttatattcacccgcagggtgattttgctcttcttacttcca-aaatctggactctgcagggtaggaggtcctgg
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30552130 73 + 172585720 ttatattCACCTCCAAAGTGATTTTGCTCTTCTTACCTCCA-AAATCTGGACTCCACAGGGCAGGAGGTCCTGA
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      175937 73 +    231697 ttatattCACCTCCAAggtgattttgctcttcttacctcca-aaatctggactccacagggcaggaggtcctga
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1             98146 73 +   1495729 ttatattcccccccagggtgattttgcacttctcatctcca-aaatctggactctgcagggtaggaggtcctga
i macNem1.NW_012012100v1          I 93222 C 0
s cerAty1.NW_012002535v1            209335 73 -    863181 ttatattCACCTCCAAGGTGATTTTGCTCTTCTTACCTCCA-AAATCTGGACTCCACAGGGCAGGAGGTTCTGA
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    61628 73 -    117593 ttatattCACCTCCAAggtgattttgctcttcttacctcca-aaatctggactccacagggcaagaggttctga
i chlSab2.chr17_KE148042v1_random C 0 C 0
s otoGar3.GL873550                17397255 64 -  18854210 -tagattcaccctctgggaa---------ctctcatctctgcaactctgggctctgcagagtagcaggttctgc
i otoGar3.GL873550                C 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I

a score=1385525.000000
s hg38.chr6_GL000254v2_alt         1293810 277 +   4827813 tttcccaaagaggacaccctcgcaaggagacaaatgagagtccatggaactacacattgtggttgcacccagggatatttgaatagtatgtgcccagagacaagcaggtgagaag------------------------------------------aggaggaggcagggctgctatcacacaatgagggcaggagaagtgtgtgtggaaaccaggaatccacttggggacatcctggtttcccttg-tccgtt-----gtgtgagcagaatcatccagcaacccagcctgagagggtttgatattcaagagcccaga--accctc
s panTro5.chr6                    30164680 277 + 175400573 tttcccaaagagggcaccctggcaaggagacaaatgagagtccatggaactacacattgtggttgcacccagggatatttgaatagtatgtgcccagagacaagcaggtgagaag------------------------------------------aggaggaggcagggctgctatcacacaatgagggcaggagaagtgtgtgtggaaacgaggaatccacttggggacgtcctggtttcccttg-tccgtt-----gtgtgagcagaatcatccagcaacccagcctgagagggtttgatattcaagagcccaga--accctc
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30395315 277 + 173848474 tttcccaaagagggcaccctggcaaggagacaaatgagagtccatggaactacacattgtggttgcacccagggatatttgaatagtatgtgcccagagacaagcaggtgagaag------------------------------------------aggaggaggcagggctgctatcacacaatgagggcaggagaagtgtgtgtggaaaccaggaatccacttggggacgtcctggtttcccttg-tccgtt-----gtgtgagcagaatcatccagcaacccagcctgagagggtttgatattcaagagcccaga--accctc
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             49414 277 +   2037526 tttcccaaagagggcaccctggcaaggagacaagtgagagtccatggaactacacattgtggttgcacccagggatatttgaacagtatgtgcccagagacaagcaggtgagaag------------------------------------------aggaggaggcagggctgctatcacacaatgagggcaggagaagtgtgtgtggaaaccaggaatccacttggggacgtcctggtttcccttg-tccgtt-----gtgtgagcagaatcatccagcaacccagcctgagagggtttgatattcaagagcccaga--accctc
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74730070 281 + 122973662 tttcccaaagaaggcaccctggcaaggtgacaaatgagagtccatggaactacacattgtggttgcacccagggatatttgaatagtatgtgcccagagacaagcaggtgagaag------------------------------------------aggaggaggcagggctgctatcacacaatgagagcaggacaagtgtgtgtggaaaccaggaatccacttggggacgtcctggtttcccttg-tccattg-taagtgtgagcagaatcatccagcaacccagcctgagagggtttgatattcaagagcccaga--accctc
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30552203 281 + 172585720 TTTCTCAAAGGGGGCACCCTGGCAAGGAGACAAATGAGAGTCCATGGAACTACACATTGTGGTTGCACCCAGGGATATTTGAATAGTATGTGCCCAGAGACAAGCAGCTGAGAAG------------------------------------------aggaggaggcagggctgctatcacacaatgagggcaggagaagtatgcatagaaaccaggaatccacttggggatctcctggtttcccttg-cctgttg-taagtgtgagcagaatcatccagcaacccagcctgagagggtttgatattcaagagcccaga--accctc
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      176010 281 +    231697 tttctcaaagggggcaccctggcaaggagacaaatgagagtccatggaactacacattatgggtgcccccagggatatttgaatagtatgtgcccagagacaagcaggtgagaag------------------------------------------aggaggaggcagggctgctatcacacaatgagagcaggagaagtatgcatagaaaccaggaatccacttggggatctcctggtttcccttg-cctgttg-taagtgtgagcagaatcatccagcaacccagcctgagagggtttgatattcaagagcccaga--accctc
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1             98219 280 +   1495729 tttcccaaagggggcaccctggtaaggagacaaatgggagtccatggaactacacactatgggtgcccccagggaagtttgaatagaatgttcccagaaacaggcaggtaagaag------------------------------------------aggaggaggcagggctgctatcacacaatgagggcagcagaagtgtg--tggaaaccagaggtccacatggggacctcctggttccccttgtcccattgttaagtgtgagcagaaacatccagcaacccagcctgagagggtttcctattcaagagcccag---accctc
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            209408 281 -    863181 TTTCTCAAACGGGGCACCCTGGCAAGGAGACAAATGAGAGTCCATGGAACTACACATTGTGGTTGCCCCCAGGGATGTTTGAATAATATGTGCCCAGAGACAAGCAGGTGAGAAG------------------------------------------aggaggaggcagggctgctatcacacaatgagggcaggagacgtgtgcatagaaaccaggaatccacttggggatctcctggtttcccttg-cctgttg-taagtgtgagcagaaccatccagtaacccagcctgagagggtttgatattcaacagcccaga--accctc
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    61701 281 -    117593 tttctcaaagggggcaccctggcaaggagacaaatgggaatccatggaactacacattttggttgcccccagggaagtttgaatagaatgttcccagaaacaagcaggtaagaag------------------------------------------aggaggaggcagggctgctatcacacaatgagggtaggagaagtgtgggtagaaaccaggaatccacttggggatctcctggtttcccttg-cctgttg-taagtgtgagcagaaacatccagcaacccagcctgagagggtttgatattcaagagcccaga--accctc
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             10370 281 -    735854 TTTCTCAAAGGGGGCACCCTGGCAAGGAGACAAATGAGAGTCCATGGAACTACACATTGTGGTTGCACCCAGGGATATTTGAATAGTATGTGCCCAGAGACAAGCAGGTGAGAAG------------------------------------------aggaggaggcagggctgctatcacacaacgagggcaggagacgtgtgcatagaaaccaggaatccacttggggacctcctggtttcccttg-cccattg-taagtgtgagcagaatcatccagcaacccagcctgagagggtttgatattcaagagcccaga--accctc
i manLeu1.NW_012107142v1          N 0 C 0
s otoGar3.GL873550                17397319 305 -  18854210 -tt----------gccctctaagcaggggacaaaaaagag-ccactaaattgcccat------tgccaccagggaagtgtgaacagcacctgcccagagaccagcaggagaagaggagtcccctcctctccagcagaggtgatggaccctgacccccaggaggaggcagggctgct-tcacacagacag-gtgggagcagcgtgtgtggaacccagagatccacttaggagctctgggcttctcctgg-ctcagtg-tcattgtgaacagaaccatccaggaacccagtctgagaggatttgattttcaagagcccagaGGAGGCTC
i otoGar3.GL873550                C 0 N 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I

a score=756080.000000
s hg38.chr6_GL000254v2_alt         1294087 158 +   4827813 ag-----g-----aaggaaggattgagtgatactcctaggtaaTGTCCCAAgtctctgcttctgtgctctgacatcctcagcaggattagtgcagaagccctgctt---ccatgagttgttcccagccagtgactg----gtcacagcaagcacactaa--ggcaggccat-tactgg
s panTro5.chr6                    30164957 158 + 175400573 ag-----g-----aaggaaggattgagtgatactcctaggtaaTGTCCCACgtctctgcttctgtgctctgacatcctcagcaggattagtgcagaagccctgctt---ccatgagttgttcccagccagtgaccg----gtcacagcaagcacactaa--ggcaggccat-tactgg
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30395592 158 + 173848474 ag-----g-----aaggaaggattgagtgatactcctaggtaaTGTCCCACgtctctgcttctgtgctctgacatcctcagcaggattagtgcagaagccctgctt---ccatgagttgttcccagccagtgaccg----gtcacagcaagcacactaa--ggcaggccat-tactgg
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             49691 158 +   2037526 ag-----g-----aaggaaggattgagtgatactcctaggtaaTGTCCCACgtctctgcttctgtgctctgacatcctcagcaggattagtgcagaagccctgctt---ccatgagttgttcccagccagtgaccg----gtcacagcaagcacactaa--ggcaggccat-tactgg
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74730351 159 + 122973662 ag-----g-----aaggaaggattgagtgatactcctaggtaaTGTCCCACgtctctgctcctgtgctctgacatcctcagcaggattagtgcagaagccctgctt--cccatgagttgttctcagccagtgaccg----gtcacagcaagcacactaa--ggcaggccat-tactgg
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30552484 164 + 172585720 tg-----ggttctaaggaaggattgagtcatactcctaggtaatgtaccaaggctctgctcctgtgctctgacatcctcagcaggattagtgcagaagccctgctt--cccatgagtggttcccagccagtgaccg----gtcacagcaggcacactaa--ggcaggccat-taccgg
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      176291 159 +    231697 tg-----t-----aaggaaggattgagtcatactcctaggtaatgtcccaaggctctgctcctgtgctctgacatcctcagcaggattagtgccgaagccctgctt--cccatgagtggttcccagccagtgaccg----gtcacagcaggcacactaa--ggcaggccAT-TACCGG
i macFas5.chr4_KE145577_random    C 0 N 0
s macNem1.NW_012012100v1             98499 164 +   1495729 ag-----g-----aaggaagg-ttgagtcacactcctgggtaatctcctaaggcTGTgctcctgtgctctgacaccctcagtagcattggtgcagaagccctgcttcccccataggctgttcccagccagtgaccgctaaggcgcagcaggcgcactaa--ggcaggccat-ttctgg
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            209689 161 -    863181 tg-----t-----aaggaaggattgagtgatactcctaggtaatgtaccacggctctgctcctgtgctctgacatcctcagcaggattagtgcagaagccctgctt--cccatgagtggttcccagccagtgaccg----gtcacagcaggcacactaaggggtaggccat-taccgg
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    61982 159 -    117593 tg-----t-----aaggaaggattgagccatactcctaggtaatgtcccaaggttctgctcctgtgctctgacattctcagcaggattagtgcagaaaccctgctt--cccatgagtggttcccagccagtgaccg----gtcacagcaggcacactaa--ggcaggccat-taccgg
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             10651 164 -    735854 tgggttct-----aaggaaggattgagtcatactcctaggtaatgtaccaaggctctgctcctgtgctctgacatcctcagcaggatcagtgcagaagccctgctt--cccatgagtggttcccagccagtgaccg----gtcacagcaggcgcaataa--ggcaggccat-taccgg
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17285500 159 -  18854210 AA-----A-----AAGGAAGGTTTCACTCACAC-CCCAGGGATTCAactaagggtcccctcttgtgctctgatacccccagcagaattggtgctgaggactgaatt--cccacagtgtgttcatagactgtcacag----gtcacagcaggaacaatga--ggtaggccctatcccgg
i otoGar3.GL873550                N 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I

a score=986631.000000
s hg38.chr6_GL000254v2_alt         1294245 204 +   4827813 gagacatgggactcctctgatggccaaatgtggctccaggactcctccatgcccttcctcaactctccttagactgcctctgctctaggatgcgtcgaacagaccttgtctccttctgtccagcacttggggtcacacttgcatcattgtctgccgccttttccagggatttctggctcgcttctcata-ttcccttacaggtgt
s panTro5.chr6                    30165115 204 + 175400573 gagacatgggactcctctgatggccaaatgtggctccaggactcctccatgcccttcctcaactctccttagactgcctctgctctaggatgagtcgaacagaccttgtctccttctttccagcacttggggtcacacctgcatcattgtctgccgccttttccagggatttctggctcgattctcatg-ttcccttacaggtgt
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30395750 204 + 173848474 gagacatgggactcctctgatggccaaatgtggctccaggactcctccatgcccttcctcaactctccttagactgcctctgctctaggatgagtcgaacagaccttgtctccttctttccagcacttggggtcacacctgcatcattgtctgccgccttttccagggatttctggctcgattctcatg-ttcgcttacaggtgt
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             49849 204 +   2037526 gagatatgggactcctctgatggccaaatgtggctccaggactcctccatgcccttcctcaactctccttagactgcctctgctctaggatgcgtcgaacagaccttgtctccttctgtccagcacttggggtcacacttgcatcattgtctgccgccttttccaggggtttctggctcgcttcccata-ttcccttacaggtgt
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74730510 204 + 122973662 gaaacatgggactcctctgatggccaaatgtggctccaggactcctccatgcccttcttcaactctccttagattgcctctgctctaggatgcatcgaacaaaccttgtctccttctgtccagcacttggggtcacacttgcatcattgtctgctgccttttctagggatttctggctcgcttctcata-ttcccttacagatgt
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30552648 204 + 172585720 gagacacgggactcctctgatggccaaatgtggctccaggactcctccatgcccttgctcaaccctccttagattgcctgtgctcttgggcgcgtcgaataaactttctctccttctgtccagcacttggggtcacacttgcatcattgtctgccgccttttccagggatttctggctcgcttcccata-ttcccttacaggtgt
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random       33004 201 +    231697 gagacaggggacaactctggtggtgaactatgactccaggactcctccatggccttgctcacctctccttagactgcctgtgctctaggatgcatcgaacaaactttctctc---ctgtccagcacttggggtcacacttgcatcttggtctgccgctttttccagggatttctggctcacttcccata-ttcccttacaggtgt
i macFas5.chr4_KE145577_random    N 0 N 0
s macNem1.NW_012012100v1             98663 204 +   1495729 gagacacgggactcctctgatggccaactgtggctggaggactcctccatggccttgttcaaccctccttagattgtctgtgctctaggatgcattgaacagacctcctctccttctgtcctgcacttggggtcacacttgcatcttggtctgccgctttttccagggatttctggctcatttcccata-tacccttacaggtgt
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            209850 205 -    863181 gagacaggggactcctctgatggccaaatgtggctccaggactcccccatgcccttgctgaaccctccttagattgcctgtgctcttgggcgtgtcgcataaactttctctccttctgtccagcacttggggtcacacttgcatcattgtctgccgccttttccagggatttctggttcactttccatatttctcttacaggtgt
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    62141 204 -    117593 aagacaggggactcctctgatggccaaatgtggctccaggactcctccatgcccttgctcaaccctccttagattgcctgtgctcttgggcgcgtcgaataaactttctctccttctgtccagcacttggggtcacacttgcatcattgtctgctgccttttccagggatttctggcttgcttcccata-tttccttacaggtgt
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             10815 204 -    735854 aagacaggggactcctctgatggccaaatgtggctccaggactcctccatgcccttgctgaaccctccttagattgcctgtggtcttgggcacgtcgaataaactttctctctttctctccagcacttggggtcacacttgcatcattgtctgccgccttttccagggatttctggttcgcttcccgta-tttccttacaggtgt
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17285659 186 -  18854210 gagacagggggctcctctggtgaccaactgtgg--------ctcctccagggccttgctcagctctccttaggctgcctgtgctctgggctgcctgtctcagaccttctctcctt--------tacaggggctcagacttgcatc-ttggctgcagc-tttcccagagttttctggctccctccccata-ctgtctgacgggtgt
i otoGar3.GL873550                C 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I

a score=2863882.000000
s hg38.chr6_GL000254v2_alt         1294449 625 +   4827813 gtcccctcataagatgccgtagactttaagct-catcttggcatctgctcctcggaggacttggacta--aAAAGCATTGCCATGTGCACACCAATAAC-TCT-TACTTATTCCAACCTGTAAAATCCATCTCTTTATCCAACTTCTGCCACCCCCATAAAATCTATTTTGTGCGC-GTTTGTAGTATCTctttgaaattaacagatatttgttgtattaagccactaaattttgaggtagtttgt-gac-acagcagttaataactattaAGGCTTTCTTAAGTTTCTG-TTATTCCATGGA-TGTTATCTA-CATCT-T--TTAATTCCCTGCATTTTAATAATAtt-agccacacttgctgtttctaa-tc--ctttcctcctattc-ttttttgaaAATGTTCATTTTGtctttctctgtccttccatctttctttcctcctttcctccctCAGAGCTTTCTCCCTCCCTCCA-CTTTTTC---------------------------ACAA----ACTCTATGTGGTTAGGCTAAAAAGAAGCATTATTTGAATCT-TATGCTTAAAGTATAATGCCATAATTTACAGGATAAAAGTAAAGAAAAGGAAGTTATTAATGGAATAT-----GAAAAA-ATGCCTAGGGTGATTCTGTAGCCAAGACAGTGGTTTTTTAA-
s panTro5.chr6                    30165319 624 + 175400573 gtcccctcataagatgccgtagactttaagct-catcttggcatctgctccttggaggacttggacta--aAAAGCATTGCCATGTGCACACCAATAAC-TCT-TACTTATTCCAACCTGTAAAATCCATCTCTTTATCTAACTTCTGCCACCCCCATAAAATCTATTTTGCGCGC-GTTTGTAGTATCTctttgaa-ttaacagatatttgttgtgttaagccactaaattttgaggtagtttgt-gac-acagcagttaataactattaAGGCTTTCTTAAGTTTCTG-TTATTCCATGGA-TGTTATCTA-CATGT-T--TTAATTCCCTGCATTTTAATAATAtt-agccacacttgctgtttccaa-tc--ctttcctcctattc-ttttttgaaAATGTTCATTTTGtctttctctgtccttccatctttctttcctcctttcctccctCAGAGCTTTCTCCCTCCCTCCA-CTTTTTC---------------------------ACAA----ACTCTATGTGGTTAGGCTAAAAAGAAGCATTATTTGAATCT-TATGCTTAAAGTATAATGCCATAATTTACAGGATAAAAGTAAAGAAAAGGAAGTTATTAATGGAATAT-----GAAAAA-ATGCCTGGGGTGATTCTGTAGCCAAGACAGTGGTTTTTTAA-
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30395954 624 + 173848474 gtcccctcataagatgccgtagactttaagct-catcttggcatctgctccttggaggacttggacta--aAAAGCATTGCCATGTGCACACCAATAAC-TCT-TACTTATTCCAACCTGTAAAATCCATCTCTTTATCTAACTTCTGCCACCCCCATAAAATCTATTTTGCGCGC-GTTTGTAGTATCTctttgaa-ttaacagatatttgttgtattaagccactaaattttgaggtagtttgt-gac-acagcagttaataactattaAGGCTTTCTTAAGTTTCTG-TTATTCCATGGA-TGTTATCTA-CATGT-T--TTAATTCCCTGCATTTTAATAATAtt-agccacacttgctgtttccaa-tc--ctttcctcctattc-ttttttgaaAATGTTCATTTTGtctttctctgtccttccatctttctttcctcctttcctccctCAGAGCTTTCTCCCTCCCTCCA-CTTTTTC---------------------------ACAA----ACTCTATGTGGTTAGGCTAAAAAGAAGCATTATTTGAATCT-TATGCTTAAAGTATAATGCCATAATTTACAGGATAAAAGTAAAGAAAAGGAAGTTATTAATGGAATAT-----GAAAAA-ATGCCTGGGGTGATTCTGTAGCCAAGACAGTGATTTTTTAA-
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             50053 622 +   2037526 gt-tcctcataagatgccgtagactttaagct-catcttggcatctgctcctcggaggacttggacta--aAAAGCATTGCCATGTGCACACCAATAAC-TCT-TTCTTATTCCAACCTGTAAAATCCATCTCTTTATCCAACTTCTGCCA-CCCCATAAAATCTATTTTGCGCGC-GTTcatagtatctctttgaa-ttaacagatatttgttgtattaagccactaaattttgaggtagtttgt-gac-acagcagttaataactattaAGGCTTTCTTAAGTTTCTG-TTATTCCATGGA-TGTTATCTA-CATCT-T--TTAATTCCCTGCATTTTAATAATAtt-agccacacttgctgtttctaa-tc--ctttcctcctattc-ttttttgaaAATGTTCATTTTGtctttctctgtccttccatctttctttcttcctttcctccctCAGAGCTTTCTCCCTCCCTCCA-CTTTTTC---------------------------ACAA----ACTCTATGTGGTTAGGCTAAAAAGAAGCATTGTTTGAATCT-TATGCTTAAAGTATAATGCCATAATTTACAGGATAAAAGTAAAGAAAAGGAAGTTATTAATGGAATAT-----GAAAAA-ATGCCTAGGGTGATTCTGTAGCCAAGACAATGGGTTTTTAA-
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74730714 624 + 122973662 gtccccccataagatgccgtagactttaagct-catcttggcatctgctccttggagaacttggacta--aAAAGTATTAACACGTGCACACCAATAAC-TTT-TACTTATTCCAACCTGTAAAATCCATCTCTTTATCCAACTTCTGCCACCCCCCTAAAATCTATTTTGCTTGT-GTTTGTAGTATCTctttgaa-ttaacagatatttgttgtattaagccactaaattttgaggtagtttgt-gac-acagcagttaataactattaAGGCTTTCTTAAGTTTCTA-TTATTCCATGGA-TGTTATCTA-CATCT-T--TTAATTCCCTGCATTTTAATAATGTT-AGCCACACTTGCTGTTTCTAA-TC--CTTTCCTCCTATTCTTTTTTTGAAAATGTTCATTTTGtctttctctgtccttccatctttctttcctcctttcctccctCAGAGATTTCTCCCTCCCTCCA-TTTTTTC---------------------------ACAA----ACTCTATGTGGTTAGGCTAAAAAGAAGCATTATTTGAATCT-TATGCTTAAAGTATAATGCCATAATTTACAGGATAAAAGTAAAGAAAAGGAAGTTATTAATGGAATAT-----GAAAAA-ATGCCTAGGGGGATTCTGTAGCCGAGACAGTGG-TTTTTAA-
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30552852 615 + 172585720 gtcccctcataaaacgctgcagactttaagct-cctcttggcatctgctccttggagaacttggatca--aAAAGCATTTCCATCTGCACACCAATAAC-TCT-TATTTATTACAACCTGTAAAATCTGTCTCTTTATCCAACTTCTGCCACCCCCATAAAATCTAGTTTGCTTGT-GTTTGTAGTGTCTctttgaa-ttaacaggtatttgttgtattaagacactaaattttgaggtagtttgt-gac-acagcagttaataactattaAGGCTTTCTTACGTTTCTA-TTATTCCATGGA-TGTTATCTA-CATCT-T--TTAATTCCCTGCATTTTAATAATGTT-AAACatacttgctgtttccaa-tc--ctttcctcctattc-ctttttgaaAATTTTCATTTTGTCTTTCTCTG--------TCCTTCTTTCCTCCTTTCCTCCCTCAGAGCTTTCTCTCTCCTTCCA--TTTTTC---------------------------AGAA----ACTCTATGTGGTTAGGCTAAAAGGAAGCATTATTTGAATCT-TATGCTTAAAGTATAAAACCATAATTTACAGGGTAAAAGTAAAGAAAAGGAAGTTATTAATGGAATAT-----AAAAAATATGCCTAGGGTGATTCTGCAGCCAAGACAGTGG-TTTTTAA-
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      176667 614 +    231697 GTTCCCTCATAAAACGCTGCAGACTTTAAGCT-CCTCTTGGCATCTGCTCCTTGGAGAACTTGGATCA--AAAAGCATTTCCATCTGCACACCAATAAC-TCT-TATTTATTACAACCTGTAAAATCTGTCTCTTTATCCAACTTCTGCCACCCCCATAAAATCTAGTTTGCTTGT-GTTTGTAGTGTCTctttgaa-ttaacagatatttgttgtattaagacacgaaattttgaggtagtttgt-gac-acagcagttaataactattaAGGCTTTCTTACGTTTCTA-TTATCCCATGGA-TGTTATCTA-CATCT-T--TTAATTCCCTGCATTTTAATAATgtt-aaccatacttgctgtttccaa-tc--ctttcctcctattc-ttttttgaaAATTTTCATTTTGTCTTTCTCTG--------TCCTTCTTTCCTCCTTTCCTCCCTCGGAGCTTTCTCTCTCCTTCCA--TTTTTC---------------------------AGAA----ACTCTATGTGGTTAGGCTAAAAGGAAGCATTATTTGAATCT-TATGCTTAAAGTATAAAACCATAATTTACAGGATAAAAGTAAAGAAAAGGAAGTTATTAATGGAATAT-----GAAAAA-ATGCCTAAGGTGATTCTGTAGCCAAGACAGTGG-TTTTTAA-
i macFas5.chr4_KE145577_random    N 0 C 0
s macNem1.NW_012012100v1             98867 616 +   1495729 gttccctcataaaatgccacagacttgaagct-catcttggcatctgctccttggaggacttggacta--aAAATCATTTCCATCTGCACGTCAATAAC-TCT-TACTTATTCCAACTGGTAAAATCCTTCTCTTTATCCAACTTCTGCCACCCTCATAGAACTGATTTTGCTTGT-GTTTGTAGTATctgtttgag-ttaacaggtattttttgtattaagccactaaatttttaggtagtttgt-----------GTTAATAACTATTAAGGCTTTCTGAAGTTTCTA-TTATTCTATGAA-TATTATCCG-CATCTCT--TTAATTTGTTGCATTTTAATAATGTT-AGCCATACTTGCCGTTTCCAG-TC--CTTTCCTGCTATTC-CTTATTGAAACTTTTTATTTTGCCTTTCTCTGTTcttccttccttctttcctccttttctccctCACAGCTTTCTCCCTCCCTCCATTTTTTTC---------------------------ACAA----ATGCTATGTGGTTAGGCTAAAAGGAAGCATTAGTTTAATCT-TAGGCTAAAAGTATAATGCCATAAATTATAGAATAAAAATAAAGAAACAGAAGCTATTAATGGAATAT-----GAAAAA-ATGCCTAAGGTGATTCTGTAGCCAAGACAGTGG-TTTTTAA-
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            210055 619 -    863181 gttgcctcataaaatgctgcagactttaagctccctcttggcatctgctcc-tggagaacttggatca--aAAAGCATTTCCATTCTCACACCAATAAC-TCTATATTTATTACAACCTGTGAGAATCGTCTA-TTATCAACTTCTTGCCACTCCCAAAAATT---ATTTGCTTGTGGTTTATAGTGTCTCTTTGA--TTAACAGGGTAATGTTGTATTAAGACATAAATTTTTGAGGTAGTTTGCTGACAACAGCAGTTAATAACTATTAAGGCTTTCTTACGTTTCTATTTATCCCATGGAGTGTTATCTATCATCT-T--TTAATTCCCTGCATTTTAATAATGTTAAAAtatacttgccgtttccaa-tccgctttcctcctattc-tgttttgaaAATTTTCATTTTGTCTTTCTCTG--------TACTTCTTTCCTCCTTTCCTCCCTCAGAGCTTTCTCTCTCCTTTCA--TTTTTC---------------------------AGAA----ATTTTATGTGGTTAGGCTAAAAGGAAGCATTATTTGAATCT-TATGCTTAAAGTATAAAACCATAAATTACAGGATAAAAGTAAGGAAAAGGAAGTTATTAATGGAAAAT-----GAAAAA-ATGCCTAGGGTGATTCTGTAGCCAAGACAGTAG-TTTTTAA-
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    62345 614 -    117593 gttccctcataaaatgttgcagactttaagct-cctcttggtatctgctccttggagaacttggatca--aAAAGCATTTCCATCTGCACACCAGTAAC-TCT-TATTTATTACAACCTGTAAAATCTGTCTCTTTATCCAACTTCTGCCACCCCCATAAAATCTATTTTGCTTGT-GTTTGTAGTACCTCTTtgag-ctaacagatattttttgtattaagccactaaatttttaggtagtttgt-gac-acagcagttaataactGTTAAGGCTTTCTTACGTTTCTG-TTATCCCATGGA-TGTTATCTA-CATCT-T--TTAATTCCCTGCATTtcaataatgtt-aaacatacttgctgtttccaa-tc--ctttcctcctattc-ttttttaaaAATTTTCATTTTGTCTTTCTCTA--------TCCTTCTTTCCTCCTTTCCTCCCTCAGAGCTTTCTCTCTCCTTCCA--TTTTTC---------------------------AGAA----ACTCTATGTGGTTAGGCTAAAAGGAAGCATTATTTGAATTT-TATGCTTAAAGTATAAAACCATAATTTACAGGATAAAAGTAAAGAAAAGGAAGCTATTAATGGAATAT-----GAAAAA-ATGCCTAGGGTGATTCTGTAGCCAAGACAGTGG-TTTTTAA-
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             11019 612 -    735854 gttccctcataaaacgctgcagacttgaagct-cctcttggcatctgctccttggagaacttggatca--aAAAGCATTTCCATCTGCACACCAATAAC-TCT-TATTTATTACAACCTGTAAAATCTGTCTCTTTATCCAACTTCTGCCACCTCCATAAAATCTAGTTTGCTTGT-GTTTGTAGTGTCTC--TGAA-TTAACAGGTATttgttgtattaagacactaaattttgaggtagtttgt-gac-acagcagttaataacTATTAAGGCTTTCTTACGTTTCTA-TTATCCCATGGA-TGTTATCTA-CATCT-T--TTAATTCCCTGCATTTTAATAATGTT-AAACatacttgctgtttccaa-tc--ctttcctcctattc-ctttttgaaAATTTTCATTTTGTCTTTCTCTG--------TCCTTCTTTCCTCCTTTCCTCCCTCAGAACTTTCTCTCTCTTTCCA--TTTTTC---------------------------AGAA----ACTCTATGTGGTTAGGCTAAAAGGAAGCATTATTTGAATCT-TATGCTTAAAGTATAAAACCATAATTTACAGGATAAAAGTAAAGAAAAGGAAGTTATTAATGGAATAT-----TAAAAA-ATGCCTAGGGTGATTCTGTAGCCAAGACAGTGG-TTTTTAA-
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17285845 631 -  18854210 -gtccctcattccatgctggtgactttaatat-catcttgtcatt--cttcttggatgattcagactaacaAAATAATTTCCATCTGCACACCGATGATGTCT-TATTTGTTGAAACTTATAAAATCCTTCCCTTCATCCAACTCCTCCCACCCACATTGGACCCATTTTACTGGA-GGT-GGATTATTTctttgag-ttaaca----tttattgtattaagaccctaaatttgggggtagtttgt-tac-acaggcataaatacataataAAGCTCTCTTACATTTCTA-CTATTCCATATG-TATTATCTA-CATCT-CTGTTATTTCTTTGCCTTT---TGATGTT-AGCTACACATGCTATCTGTAAttc--ctctcctccttttc-ttcttt----tcttttagtttatctttctcct--------tccttctctcccctccttcttcct------tctgtacctccctcca-ctttttcctttttattttGGAAAATTCCTAACATACAAAATTACTTTATGTGTTTATGCTAAATGGAAGCATTATCTAGATCTATATGATAAAAGTATAATGCTAGGATATGTGGGATAAAATTAAGAA-----CAGCTATTAATAGAGTCTGAGGGGAAAAA-TTGCCT--GATAATTCTGTAGACAAGACAGTGC-CTTTTAAA
i otoGar3.GL873550                C 0 I 297
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I

a score=96285.000000
s hg38.chr6_GL000254v2_alt         1295074 20 +   4827813 CATGTAATCTCCACCTTCAA
s panTro5.chr6                    30165943 20 + 175400573 CATGTAATCTCCACCTTCAA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30396578 20 + 173848474 CATGTAATCTCCACCTTCAG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             50675 20 +   2037526 CATGTAATCTCCACCTTCAA
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74731338 20 + 122973662 CATGTAATCTCCACCTTCAA
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30553467 20 + 172585720 CATTTAATCTCCACCTTCAA
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      177281 20 +    231697 CATTTAATCTCCACCTTCAA
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1             99483 20 +   1495729 CATTTAATCTCCACCTTCAA
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            210674 20 -    863181 CATTTAATCTCCACCTTCAA
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    62959 20 -    117593 CATTTAATCTCCACCTTCAA
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             11631 20 -    735854 CATTTAATCTCCACCTTCAA
i manLeu1.NW_012107142v1          C 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e otoGar3.GL873550                17286476 297 -  18854210 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I

a score=1456573.000000
s hg38.chr6_GL000254v2_alt         1295094 291 +   4827813 CTGAGTGTTTTCAGAACACATGAGCAACATAAGTTCTTTCCCATTCttgg---------------tacaagcacttgggaaatcaaattagccttatcttgtatgattaaggtccatacactgtataatcccaccacctg-ctcctgatcatacactctggggatatttttggctatgtgtc----------ccagagacgtgtacaccaatgtttatggc-aaaaaaactggaaacaatcacatatgcatcaatgg-gaattaacaaaattgtgatataatccctaaaagtaaaattttagcagtaaaaatgattgaa
s panTro5.chr6                    30165963 291 + 175400573 CTGAGTGTTTTCAGAACACATGAGCAACATAAGTTCTTTCCCATTCttgg---------------tacaagcacttgggaaatcaaattagccttatcttgtatgattaatgtccatacactgtataatcccaccacctg-ctcctgatcatacactctggggatatttttggctatgtgtc----------ccagagacgtgtacaccaatgtttatggc-aaaaaaactggaaacaatcacatatgcatcaatgg-gaattaacaaaattgtgatataatcatgaaaagtaaaacgtcagcagtaaaaatgaatgaa
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30396598 291 + 173848474 CTGAGTGTTTTCAGAACACATGAGCAACATAAGTTCTTTCCCATTCttgg---------------tacaagcacttgggaaatcaaattagccttatcttgtatgattaatgtccatacactgtataatcccaccacctg-ctcctgatcatacactctggggatatttttggctatgtgtc----------ccagagacgtgtacaccaatgtttatggc-aaaaaaactggaaacaatcacatatgcatcaatgg-gaattaacaaaattgtgatataatcatgaaaagtaaaacttcagcagtaaaaatgaatgaa
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             50695 291 +   2037526 CTGAATGTTTTCAGAACACATGAGCAACATAAGTTCTTTCCCATTCttgg---------------tacaagcacttgggaaatcaaattagccttatcttgtatgattaatgtccatacactgtataatcccactatctg-ctcctgatcatacactctggggatatctttggctatgtgtc----------ccagagacgtgtacaccaatgtttatggc-aaaaaaactgaaaacaatcacatatgcatcaatgg-gaattaacaaaattgtgatataatcacgaaaagtaaaattttagcagtaaaaatgattgaa
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74731358 290 + 122973662 CCGAATGTTTTCAGAACACATGAGCAAAATAAGTTCTTTCCCATTCttgg---------------tacaagcacttgggaaatcaaattagccttatcttgtatgattaatgtccatacactgtataatcccaccatctg-ctcctgatcatacactctggggatatttttggctatgtgtc----------ccagagacgtgtacaccaatgtttatggc--aaaaaactggaaacaatcacatacgcatcaatgg-gaattaacaaaattgtgatataatcacgaaaagtaaaatttcagcagtaaaaatgaatgaa
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30553487 291 + 172585720 CTGAATGTTTTCAGAACACATGAGCAACATGAACTCTTTCCCATTCttgg---------------tacaagcacttgggaaatcaaattagccttacctagtatgattaacgtccatacaccgtataatcccaccgtctgcctcctgattatacactctggggacattcttagctatgtgtc----------caggagacgtgtacaccaatgtttatggc--aaaaaactggaaataatcacatatacatcaatgg-gaattaacaaaattgtggtatattcataaaaagtaaaattttagcagtaaaaatgaatgag
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      177301 291 +    231697 CTGAATGTTTTCAGAACACCTGAGCAACATGAGCTCTTTCCCATTCttgg---------------tacaagcacttgggaaatcaaattagccttatctagtatgattaacgtccatacaccgtataatcccaccgtctgcctcctgatcatacactctggggacattcttggctatgtgtc----------caggagacgtgtacaccaatgtttatggc--aaaaaactggaaataatcacatatacatcaatgg-gaattaacaaaattgtggtatattcataaaaagtaaaactttagcagtaaaaatgaatgag
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1             99503 288 +   1495729 CTGAATGTTTTCAGAACACCTGAGCAACATGAGCTCTTTCCCATTCttgg---------------tacaagcacttgggaaatc-aattagccttatctagtatgattaacatccatgcaccaaataatcccaccatctg-ctcctgagcatatactctggggatattcttggctatgtgtc----------caggagacatgtacaccaatgtttatgac---aaaaactggaaacaatcacatatacatcaatgg-gaattaacaaaattgtgatataatcgcaaaaagtaaaactttagcagtgaaaatgaatgaa
i macNem1.NW_012012100v1          C 0 I 2251
s cerAty1.NW_012002535v1            210694 291 -    863181 CTGAATGTTTTCAGAACACATGAGCAACATGAACTCTTTCCCATTCttgg---------------tacaagcacttgggaaatcaaactagccttatctagtatgattaatgtccatacactgtataatcccaccgtctgtctcctgatcatacactctggggacattcttggctatgtgtc----------caggagacgtgtacaccaatgtttatggc--aaaaaactggaaataatcacatatacatcaatgg-gaattaacaaaattgtggtatattcataaaaagtaaaactttagcagtaaaaatgaatgag
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    62979 292 -    117593 CTGAATGTTTTCAGAACACCTGAGCAACATGAGCTCTTTCCCATTCttgg---------------tacaagcacttgggaaatc-aattagccttatctagtatgattaacgtccatacaccgtataatcccaccgtctgcctcctgatcatacactctggggacattcttggctatgtgtc----------caggagacgtgtacaccaatgtttatggcaaaaaaaactggaaacaatcacatatacatcaatag-gaattaacaaaattgtggtataatcgcaaaaagtaaaactttagcagtaaaaatgaatgag
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             11651 291 -    735854 CTGAATGTTTTCAGAACACATGAGCAACATGAACTCTTTCCCATTCttgg---------------tacaagcacttgggaaatcaaattagccttacctagtatgattaacgtccatacaccgtataatcccaccgtctgcctcctgattatacactctggggacattcttggctatgtgtc----------caggagacgtgtacaccaatgtttatggc--aaaaaactggaaataatcacatatacatcaatgg-gaattaacaaaattgtggtatattcataaaaagtaaaactttagcagtaaaaatgaatgag
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17286773 313 -  18854210 CTGAGTGTTTTGAGAACACATgaacaatctaaactcttacacattcttgatgaaagttaatttgctacaaacaccttggaaataaaataagctttaactagtacagttaaagtattcacaccatgtaaacccaccatcctacccctgat-acaaact-tgggaacctccttgcctatgtgccctgatgtgtactggagacatatatatttatgtttatgaa---aaaaacttgaatcaactatatatacaacaacagaaaagtagcaaaattgtgatataattatagaatgtaaaacttcagtagtgaaaatgaatCA-
i otoGar3.GL873550                I 297 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I

a score=221101.000000
s hg38.chr6_GL000254v2_alt         1295385 51 +   4827813 cagcaccttcccacatcag----agataactctcctacacataacgtgcatcaca
s panTro5.chr6                    30166254 51 + 175400573 cagcaccctcccacatcag----agataactctcctacacataacgcgcatcaca
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30396889 51 + 173848474 cagcaccctcccacatcag----agataactctcctacacataacgtgcatcaca
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             50986 51 +   2037526 cagcaccctcccacaccag----agataactctcctacacctaacatgcatcaca
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74731648 51 + 122973662 cagcaccctcccacatcag----agataactctcctacacgtaacgcgcatccca
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30553778 51 + 172585720 cagcaccctcccacatcag----agataactctcctacacataacgcgcatcgca
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      177592 51 +    231697 cagcaccctcccacatcag----agataactctcctacacataaagcgcatcgca
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            210985 51 -    863181 cagaaccctcccacatcag----agataactctcctacacataacgcgcatcgca
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    63271 51 -    117593 cagcaccctcccacatcag----agataactctcctacacataacgcacatcgca
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             11942 51 -    735854 cagcaccctcccacatcag----agataactctcctacacataacgCGCATCGCA
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17287086 52 -  18854210 ---CAGCCTCCCACATGAGGACTAACTAACTCTCTTATACATAGTGTGTGCCACA
i otoGar3.GL873550                C 0 I 109
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e macNem1.NW_012012100v1             99791 2251 +   1495729 I

a score=5500.000000
s hg38.chr6_GL000254v2_alt         1295436 1 +   4827813 g
s panTro5.chr6                    30166305 1 + 175400573 g
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30396940 1 + 173848474 g
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             51037 1 +   2037526 g
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74731699 1 + 122973662 g
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30553829 1 + 172585720 g
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      177643 1 +    231697 g
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            211036 1 -    863181 g
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    63322 1 -    117593 g
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             11993 1 -    735854 G
i manLeu1.NW_012107142v1          C 0 M 1500
s otoGar3.GL873550                17287247 1 -  18854210 g
i otoGar3.GL873550                I 109 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e macNem1.NW_012012100v1             99791 2251 +   1495729 I

a score=753972.000000
s hg38.chr6_GL000254v2_alt         1295437 248 +   4827813 gagaatacatatagtgtgagttcgctgtacagggaagtt-aaaaaaacaggtcagactg-----tgatttgggtatata--tatttattgtaaaaatctttagagacagtgcaaaggactagtaaatacaagactcaagatagaggttccttttggtggATAGGATTGGGCAACAGTCTAGGGTGGCTTCATAGGTTCTGTTTCTTATGCCAGGAGAGGATGTCCAGGTAATTAGTTACTTGATCATAAATC------------------------ttta
s panTro5.chr6                    30166306 248 + 175400573 aagaatacatatagtgtgagttctctgaacagggaagtt-aaaaaaacaggtcagactg-----tgatttgggtatata--tatttattgtaaaaatctttagagacagtgcaaaggactagtaaatacaagactcaagatagaggttccttttggtggATAGGATTGGGCAACAGTCTAGGGTGGCTTCATAGGTTCTGTTTCTTATGCCAGGAGAGGATGTCCAGGTAATTAGTTACTTGATCATAAATC------------------------ttta
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30396941 248 + 173848474 aagaatacatatagtgtgagttctctgaacagggaagtt-aaaaaaacaggtcagactg-----tgatttgggtatata--catttattgtaaaaatctttagagacagtgcaaaggactagtaaatacaagactcaagatagaggttccttttggtggATAGGATTGGGCAACAGTCTAGGGTGGCTTCATAGGTTCTGTTTCTTATGCCAGGAGAGGATGTCCAGGTAATTAGTTACTTGATCATAAATC------------------------ttta
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             51038 264 +   2037526 aagaatacatatagtgtgagttctctgtacagcgaagtt-aaaaaaacaggtcagactg-----tgatttgggtatata--tatttattgtaaaaatctttagagacagtgcaaaggactagtaaatacaagactcaagatagaggttccttttggtggATAGGATTGGGCAACAGTCCAGGGTGGCTTCATAGGTTCTGTTTCTTATGCCAGGAGAGGATGTCCAGGTAATTAGTTACTTGATCATAAGTCtttatttatttattta--------ttta
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74731700 261 + 122973662 gagaatacatatagtgtgagttctctgcacagggaagttaaaaaaaacaggtcagactg-----tgatttaggtatata--tatttattgtaaaaatctttagagacattgcaaaggaatagtaaatacaagactcaagatagaggttccttttggaggATAGGATTGGGCAACAGTCTAGGGTGGCTTCATAGCTTCTGATTTTTATGCCAGGAGAGGATGTCCAGGTAGTTAGTTACTTGATCATAAATC----tttatttattta--------ttta
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30553830 251 + 172585720 aagaatacacatagtgtgagttccctgtaccgggaagtt-caaaaaaca---caaactg-----tgatttgggtatatatgtacttattgcaaaaatctttagagacagtgaaaaggaatagtaaatacaagactcaagatagaagttgcttttgggggATATGATTGGGCAACAGTCTAGGGTGGCTTCATAGGTTCTGATTTTTATGCCAGGAGAGGATGTCCAGG----TAGTTACTTGATCATAAATC----tttattta------------ttta
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      177644 263 +    231697 aagaatacacatagtgtgagttctctgtaccgggaagtt-caaaaaaca---caaactg-----tgatttgggtatatatgtacttattgcaaaaatctttagagacagtgaaaaggaatagtaaatacaagactcaagatagaggttgcttttgggggATATGATTGGGCAACAGTCTAGGGTGGCTTCATAGGTTCTGATTTTTATGCCAGGAGAGGATGTCCAGG----TAGTTACTTGATCACAAATC----tttatttatttatttatttgttta
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            211037 251 -    863181 aagaatacacatagtgtgagttctctgtaccaggaagtt-caaaaaaca---caaactg-----tgatttgggtatatatgtacttattataaaaatctttagagacagtgaaaaggaatagtaaatacaagactcaagatagaggttgcttttgggggATATGATTGGGCAACAGTCTAGGGTGGCTTCATAGGTTCTGATTTTTATGCCAGGACAGGATGTCCAGG----TAGTTACTTGATCATAAATC----TTTAttta------------ttta
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    63323 251 -    117593 aagaatacacatagtatgagttctctgtaccgggaagtt-caaaaaaca---caaactg-----tgatatgggtatatatgtacttattgtaaaaatctttagagacagtgaaaaggaatagtaaatacaagactcaagacagaggttgcttttgggggATACGATTGGGCAACAGTCTAGGGTGGCTTCATAGGTTCTGATTTTTATGCCAGGAGAGGATGTCCAGG----TAGTTACTTGATCATAAATC----TTCACTTA------------tttg
i chlSab2.chr17_KE148042v1_random C 0 C 0
s otoGar3.GL873550                17287248 213 -  18854210 aaAAAAACATGGAGGATGAGTTCAGTGCACAGGACCTTT-AAAACAAGA---AAAACTAACATTTGGTTTGGGGATATACATGTTTATTATAAAAATC-----------TGTAAAGAAATGAT-----------------------TTTTTCTCTGGCATTGGGACTGGGCAGCAGCCCATGATGGCTTCAAAGTTTCTGCTTCTTATATCAGTGGAAGGTGCCCAAG----TA-TCACTTGTTCATAACTC------------------------CTTG
i otoGar3.GL873550                C 0 N 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e manLeu1.NW_012107142v1             11994 1500 -    735854 M
e macNem1.NW_012012100v1             99791 2251 +   1495729 I

a score=826941.000000
s hg38.chr6_GL000254v2_alt         1295685 264 +   4827813 ttt------------------atttatttattcatttatttttgagatggagtctcactcttgttgcccaagcgggagtgcagtggtgtgatcttgtctcactgcaacctccgcctcccatgttcaagcgattctcctacctcagcctctg-agtagctaggattacaggcacctgccctgatgcccggctaatttttgtatttttcgtacagactgtgcttcaccatgttggccaggctggtctccaactcctgatctcaggtgatccacccacttcggcct
s panTro5.chr6                    30166554 264 + 175400573 ttt------------------atttatttattcatttatttttgagatggagtctcactcttgttgcccaagcgggagtgcagtggtgtgatctcgtctcactgcaacctccacctcccatgttcaagcgattctcctacctcagcctctg-agtagctaggattacaggcacctgccttgatgcctggctaatttttgtatttttcatacagactgtgcttcaccatgttagccaggctggtctctaactcctgatctcaggtgatccacccacttcggcct
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30397189 264 + 173848474 ttt------------------atttatttattcatttatttttgagatggagtctcactcttgttgcccaagcaggagtgcagtggtgtgatctcgtctcactgcaacctccacctcccatgttcaagcgattctcctacctcagcctctg-agtagctaggattacaggcacctgccttgatgcctggctaatttttgtatttttcatacagactgtgcttcaccatgttagccaggctggtctctaactcctgatctcaggtgatccacccacttcggcct
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             51302 264 +   2037526 ttt------------------atttatttattcatttatttttgagatggagtctcactcttgttgcccaagcgggagtgcaatggcgtgatctcatctcactgcaacctccgcctcccatgttcaagcgattctcctacctcagcctctg-agtagctaggattacaggcacctgccatgatgcccggctaatttttgtattttttatacagactgtgcttcaccatgttggccaggctggtctccaactcctgatctcaggtgatccgcccacttcggcct
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74731961 264 + 122973662 ttt------------------atttattcattcatttatttttgagatggagtctcactcttgtcacccaggcaggagtgcagtggtgtgatctcggctcactgcaacctccacctcccatgttcaagagattctcctacctcagcctctg-agcagctaggattacaggcacctgccatgatgccaggctaatttttgtatttttcgtacagactgtgcttcaccatgttggccaggctggtctccaactcctgatctcaggtgatccacccacttcggcct
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30554081 265 + 172585720 ttt------------------atttatttattcatttatttttgagatggagtctcacttctgttgcccaggctggagtgcagtggtgtgatctcagctcactgcaacctctgcctcccgtgctcaagtgattctcctacctcagcctttggagtagctaggattacaggcacctgccatggcacctggctaatttttgtatttttagtagagactgtgcttcaccatgttggccaagcttgtctccaactcctgatctctggggatcaacccacttcggcct
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      177907 265 +    231697 ttt------------------atttattcattcatttatttttgagatggagtctcactcctgtcgcccaggctggagtgcagtggtgtgatctcagctcactgcaacctctgcctcccgtgctcaagtgattctcctacctcagcctttgcagtagctaggattacaggcacctgccatggcacctggctaatttttatatttttagtagagactgtgcttcaccatgttggccaagcttgtctccaactcctgatctcttggggtctacccacttcggcct
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            211288 258 -    863181 -----------------------ttatttattcatttatttttgagatggagtctcactcctgtcgcccaggctggagtgcagtggtgtgatctcagctcactgcaacctctgcctcccgtgctcaagcaattctcctacctcagcctttggagtagctaggattacaggcacctgccatggcacctggctaatttttgtatttttagtagagactgtgcttcaccatgttggccaggcttgtctccaactcctga--tctggggattcacccacttcggctg
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    63574 261 -    117593 ----------------------tttatttgttcatttatttttgagatggagtctcactcctgtcacccaggctggagtgcagtggtgtgatgttagctcactgcaacctctgcctcccgtgctcaagcgattctcctacctcagcctttggagtagctaggattacaggcacctgccatggcccctggctaatttttgtatttttagtagagactgtgcttcaccatgttggccaggcttgtctccaactcctgatctctggggattcacccacttcggcct
i chlSab2.chr17_KE148042v1_random C 0 C 0
s otoGar3.GL873550                17399237 263 -  18854210 TTTCTCACACTGTGCCTTGGGATGCACtttttt-ttttcttctaagacagagtctcacta-tgtcacccttggtagagtgccatggc---atcacagctcacagcaacctctaactcttggacttaagcaattctctcacttcagcctcccaagtagctgggactacaggcatccgccacaatgcctggctatttgtgttgttgctgttgcagttttcgttgt----tgtttagcaggccggggtcgagttc-----------gaatccgcctgcctcagtgt
i otoGar3.GL873550                N 0 I 73
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e manLeu1.NW_012107142v1             11994 1500 -    735854 M
e macNem1.NW_012012100v1             99791 2251 +   1495729 I

a score=345606.000000
s hg38.chr6_GL000254v2_alt         1295949 114 +   4827813 cccaaaatgctgggattagaagcatgagccaccactcccggccCACAAATATTTATAGTGGCAATTTTCAAAATGCACCTTGTGTGCCATTCCTGATTATTTGgaaatgaaaga
s panTro5.chr6                    30166818 114 + 175400573 cccaaaatgctgggattagaagcatgagccaccactcccggccCACAAATATTTATAGTGGCAATTTTCAAAATGCACCTTGTGTGCCATTCCTGATTATTTGgaaatgaaaga
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30397453 114 + 173848474 cccaaaatgctgggattagaagcatgagccaccactcccggccCACAAATATTTATAGTGGCAATTTTCAAAATGCACCTTGTGTGCCATTCCTGATTATTTGgaaatgaaaga
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             51566 114 +   2037526 cccaaaatgctgggattagaagcatgagccaccactcctggccCACAAATATTTATAGTGGCAATTTTCAAAATGCACCTTGTGTGCCATTCCTGATTATTTGgaaatgaaaga
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74732225 114 + 122973662 cccaaagtgctgggattagagacatgagccaccgctcccggcTCACAAATATTTATAGTGGCAATTTTCAAAACGCACCTTGTGTGCCATTCCTGATTATTTGgaaatgaaaga
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30554346 114 + 172585720 cccaaagtgctggcattagaggcatgagccactgcccctggccCACAAATCTTTAAAGTGGCATTTTTCAAAATGCACTTTGTGTGCCATTCCTGATTATTTGgaaatgaaaga
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      178172 114 +    231697 cccaaagtgctggcattagaggcatgagccactgtccctggccCACAAATCTTTAAAGTGGCGTTTTTCAAAATGCACCTTGTGTGCCATTCCCGATTATTTGgaaatgaaaga
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            211546 114 -    863181 cccaaagtgctggcattagaggcatgagccactgcccccggccCACAAATCTTTAAAGTGGCATTTTTCAAAATGCACCTTGTGTGCCATTCCTGATTATTTGgaaatgaaaga
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    63835 114 -    117593 cccaaagtgctggcattagaggcatgagtcactgcccctggccCACAAATCTTTAAAGTGGAATTTTTCAAAATGCACCTTGTGTGCCATTCCTGATTAGTTGgaaatgaaaga
i chlSab2.chr17_KE148042v1_random C 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e otoGar3.GL873550                17399500  73 -  18854210 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e manLeu1.NW_012107142v1             11994 1500 -    735854 M
e macNem1.NW_012012100v1             99791 2251 +   1495729 I

a score=113451.000000
s hg38.chr6_GL000254v2_alt         1296063 30 +   4827813 gaaaagaaaacacaaaagttcattgcaagg
s panTro5.chr6                    30166932 30 + 175400573 gaaaagaaaacacaaaagttcattgcaagg
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30397567 30 + 173848474 gaaaagaaaacacaaaagttcattgcaagg
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             51680 30 +   2037526 gaaaagaaaacacaaaagttcattgcaagg
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74732339 30 + 122973662 gaaaagaaaacacaaaagttcattgcaagg
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30554460 30 + 172585720 gaaaagaaaacacaaaagttcattgcaagg
i rheMac8.chr4                    C 0 I 558
s macFas5.chr4_KE145577_random      178286 30 +    231697 gaaaagaaaatacaaaagttcattgcaagg
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            211660 30 -    863181 gaaaagaaaatacaaaagttcattgcaagg
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    63949 30 -    117593 gaaaagaaaatacaaaagttcattgcaagg
i chlSab2.chr17_KE148042v1_random C 0 C 0
s otoGar3.GL873550                17399573 30 -  18854210 gaaaaaaatatatcaaagttcatcgccaag
i otoGar3.GL873550                I 73 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e manLeu1.NW_012107142v1             11994 1500 -    735854 M
e macNem1.NW_012012100v1             99791 2251 +   1495729 I

a score=59306.000000
s hg38.chr6_GL000254v2_alt         1296093 20 +   4827813 atccttagcgataaatacat
s panTro5.chr6                    30166962 20 + 175400573 aaacttagcgataactacat
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30397597 20 + 173848474 aaacttagcgataactacat
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             51710 20 +   2037526 atccttagcaataactacat
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74732369 20 + 122973662 atccctagtgataactacat
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30555048 20 + 172585720 atccttagcgataactacac
i rheMac8.chr4                    I 558 C 0
s macFas5.chr4_KE145577_random      178316 20 +    231697 atccttagcgataactacac
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            211690 20 -    863181 ttccttagtgataactacat
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    63979 20 -    117593 atccttagcgattactacat
i chlSab2.chr17_KE148042v1_random C 0 C 0
s otoGar3.GL873550                17399603 20 -  18854210 atccttactgagaactactt
i otoGar3.GL873550                C 0 N 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e manLeu1.NW_012107142v1             11994 1500 -    735854 M
e macNem1.NW_012012100v1             99791 2251 +   1495729 I

a score=746199.000000
s hg38.chr6_GL000254v2_alt         1296113 219 +   4827813 gagttaaaacaaagccacagccaattgtaaggagccatgtgacagagagtaccaggatgccatgaaaaaatagccttggctagaaataggtcatttgattcttggctaattggcaactctctacattctctggtgtacaatgttcaatctgatGTGCAAGGCAATTGTATCTCgcaaataatttgagaatttgatatgttgctca-attttaccacagat
s panTro5.chr6                    30166982 219 + 175400573 gagttaaaacaaagccacagccaattgtaaggagccatgtgacagagagtaccaggatgccatgaaaaaatagccttggctagaaataggtcatttgattcttggctaattggcaactctctacattctctggtgtacaatgttcaatctgatGTGCAAGGCAATTGTATCTCGCAAAGAATTTgagaatttgatatgttgctca-attttaccacagac
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30397617 219 + 173848474 gagttaaaacaaagccacagccaattgtaaggagccatgtgacagagagtaccaggatgccatgaaaaaatagccttggctagaaataggtcatttgattcttggctaattggcaactctctacattctctggtgtacaatgttcaatctgatGTGCAAGGCAATTGTATCTCGCAAAGAATTTgagaatttgatatgttgctca-attttaccacagac
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             51730 219 +   2037526 gagttaaaacaaagccacagccaattgtaaggagccatgtgacagagaggaccaggatgccatgaaaaaatagccttggctagaaataggtcatttgattcttggctaattggcaactctctacattctctggtgtacaatgttcaatctgatGTGCAAGGCAATTGTATCTCACAAAGAATTTgagaatttgatatgttgctca-attttaccacagat
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74732389 219 + 122973662 gcgttaaaacaaagccacagcaaattgtaaagagccatgtgacagatagtaacaggatgccatgaaaaaatagccttggctagaaataggtcatttgattcttggctaattggcaactctctacattctctggtatacaatgtccaatctgatGTGCAAGGCAATTTTATCTCGCAAAGAATTTgagaatttgatatgttgctcg-attttaccacacat
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30555068 219 + 172585720 gcgttaaaacaaagccacagccaattgtaaggagccatgtgacagagaggaccaggatgccatg-aaaaatagccttggctagaaataggtcatttgattcttggctaattggcaactctctacactttctggtatacgatgttcaatctgatGTGCAAGGCAGTTGTATCTTGCAAAGAATTTgggaatttgatatgttgctcacattttaccacacac
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      178336 219 +    231697 gtgttaaaatgaagccacagccaattgtaaggagccatgtgacagagaggaccaagatgccatg-aaaaatagccttggctagaaataggtcatttgattcttggctaattggcaactctctacactttctggtatacgatgttcaatctgatGTGCAAGGCAGTTGTATCTTGCAAAGAATTTgggaatttgatatgttgctcacattttaccacacac
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            211710 219 -    863181 gcgttaaaacaaagccacagccaattgtaaggagccttgtgacagagaggaccaggatgccatg-aaaaataggcttggctagaaataggtcatttgattcttggctaattggcaactctctatactctctggtatacaatgttcaatctgatGTGCAAGGCAATTGTATCTTGCAAAGAATTTgagaatttgatatgttgctcacattttaccacacac
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    63999 219 -    117593 gcgttaaaacaaagccacagccaattgtaaggagccatgtgacagaaaggaccaggatgccatg-aaaaatagccttggctagaaataggtcatttgcttcttggctaattggcaactctctacactctctggtatacaatgttcaatctgatATGCAAGGCAATTGTATCTTGAAAAGAATTTgagaatttgatatgttgctcacattttaccacacac
i chlSab2.chr17_KE148042v1_random C 0 C 0
s otoGar3.GL873550                17287577 200 -  18854210 ------GAGCAAAGCTATAGCCAATAGTAATGCACCATGTGACAGAAAAGAGCAGGATGCCATG--AAAGTAGCCCTGGCTAGAACTCGATCATTTGACCCTCGGCTCACTGGTAA--CTCTGGATTCTCTGCTACAGAAAGTTGAACCTGATGAGC-AGGCAATTCCattttgcaaaggagttag--------tgtgttacttc-tacttaccacataa
i otoGar3.GL873550                N 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e manLeu1.NW_012107142v1             11994 1500 -    735854 M
e macNem1.NW_012012100v1             99791 2251 +   1495729 I

a score=1884340.000000
s hg38.chr6_GL000254v2_alt         1296332 458 +   4827813 acaagtgaattaaacttttacagaatag-aaaaaaagcactgtcgagcaaaataaattaaatgaaaacacat-----------------------------------aaaggaataactagtgatgaaat-agcaataagaatggaaaacacgaaagagtttcttttacagcaacattagaagcacaaaataactgtatttttcagaatcatactggagtccaactcacttctactacatctaattaaaaaacacagcgaaagatgttaaactgatcaatggatgcccactgaatacccagttattg--aaaaatcttgttcctagattggagttaaccatttccgcctactacatcaaaccaaatcgttgttcgtgatgctaagctagctgtacagacaaagatgtgagacacattttctctaactg-caaagcacc--gattaggcaaatatttttgca---gaagcttgag-taagaaaattgacattttgggcattctta
s panTro5.chr6                    30167201 459 + 175400573 acaagtgaattaaacttttacagaatag-aaaaaaagcactgtcgagcaaaataaattaaatgaaaacacat-----------------------------------aaaggaataactagtgatgaaat-agcaataagaatggaaaacatgaaagagcttcttttacagcaacattagaagcacaaaataactgtatttttcagaatcatactggagtccaaatcacttctaccacatctaattaaaaaacacagcgaaagatgttaaactgatcaatggatgcccactgaatacccagttattg--aaaaatcttgttcctagattggagttaaccatttccgcctaccacatcaaaccaaatcgttgt-cgtgatgctaagctagctgtacagacaaagacgtgagacacattttctctaactg-caaagcaccctgattaggcaaatatttttgta---gaagcttgag-taagaaaattgacattttcgtcattctta
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30397836 459 + 173848474 acaagtgaattaaacttttacagaatag-aaaaaaagcactgtcgagcaaaataaattaaatgaaaacacat-----------------------------------aaaggaataactagtgatgaaat-agcaataagaatggaaaacatgaaagagcttcttttacagcaacattagaagcacaaaataactgtatttttcagaatcatactggagtccaaatcacttctaccacatctaattaaaaaacacagcgaaagatgttaaactgatcaatggatgcccactgaatacccagttattg--aaaaatcttgttcctagattggagttaaccatttccgcctaccacatcaaaccaaatcgttgt-cgtgatgctaagctagctgtacagacaaagacgtgagacacattttctctaactg-caaagcaccctgattaggcaaatatttttgta---gaagcttgag-taagaaaattgacattttcgtcattctta
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             51949 459 +   2037526 acaagtgaattaaacttttacagaatag-aaaaaaagcactgtcgagcaaaataaattaaatgaaaacacat-----------------------------------aaaggaataactagtgatgaaat-agcaataagaatggaaaacaaggaagagcttcttttacagcaacattagaagcacaaaataactgtatttttcagaatcatactggagtccaaatcacttctaccacatctaattaaaaaacacagcgaaagatgttaaacggatcataagatgcacactgaatacccagttattg--aaaaatcttgttcctagattggagttaaccatttccgcctaccacatcaaaccaaattgttgt-cgtgatgctaagctagctgtacagacaaagatgtgagacacattttctctaactg-caaagcaccctgattaggcaaatatttttgta---gaagcttgag-taagaaaattggcattttgggcattctta
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74732608 459 + 122973662 acaagtgaattaaacttttacagaatagaaaaaaaagcactgtcaagcaaaataaattaaataaaaagacat-----------------------------------aaaggaataactagtgatgaaat-agcaataagaatgtaaaatacgaaagagctgcttttactgcaacattagaagaacaaaataactgtatttttcagaatcatactggagtccaaatcacttctacca-atctaattaaaaaacacagcaaaagatgttaaactgatcaatggatgcccactgaatacccagttattg--aaaaatcttgttcctagattggagttaaccatttccgcctaccacatcaaaccaactcgttgt-cgtgatgctaagctagctgtacagacaaagatgtgagacacattttttctaactg-caaagcgccctgattaggcaaatacttttgta---gaagcttgag-taagaaaattggcattttgggcattctta
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30555287 458 + 172585720 acaagtaaattaatctttcacagaatag-agaaaaggcattgttgagcaaaataaattaaatgaaaagacat-----------------------------------aaagaaataactagtgatgaaat-agcaataagaatggaaaacatgaaagagctgcttttaaagcaacattagaagcacaaaataactgtatttttcagaatcatactggagtccaaatcacttctaccacatctaattaaaaaacacagtgaaagatgttaaagtgatcaatggatgcccactgaatacctagttactg--aaaaatcttgtttctaaattggagttaaccatttccgcctaccacatcaaaccgaatcatggt-tgtgatgctaagctagctgcacagagagagatgtgagacacattttc-ctaactg-caaagcaccctgattaggcacatatttttgta---gaagcttgag-taagacaattggcattttgggcattctta
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      178555 457 +    231697 acaagtaaattaatctttcacagaatag-agaaaaggcattgttgagcaaaataaattaaatgaaaagacat-----------------------------------aaagaaataactagtgatgaaat-agcaataagaatggaaaacatgaaagagctgcttttaaagcaacattagaagcacaaaataactgtatttttcagaatcatactggagtccaaatcacttctaccacatctaattaaaaaacacagtgaaa-atgtaaaagtgatcaatggatgcccactgaatacctagttattg--aaaaatcttgtttctaaattggagttaaccatctccgcctaccacatcaaaccgaatcgttgt-cgtgatgctaagctagctgcacagagagagatgtgagacacattttc-ctaactg-caaagcaccctgattaggcacatatttttgta---gaagcttgag-taagacaattggcattttgggcattctta
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            211929 459 -    863181 acaagtaaattaatctttcacagaatag-aaaaaaagcattgttgagcaaaataaattaaatgaaaagacat-----------------------------------aaagaaataactagtgatgaaat-agcaataagaatggaaaacatgaaagagctgcttttaaagcaacattagaagcacaaaataactgtacttttcagaatcatactggagtccaaatcacttctaccacatctaattaaaaaacacagcgaaagatgttaaagtgatcaatggatgcccactgaatacctagttattg-aaaaaatcttgtttctagattggagttagccatttctgcctaccacatcaaaccgaatcgttgt-cgtggtgctaagctagttgcacagagagagatgtgagacacattttc-ctaactg-caaaggaccgtgattgggcacatatttttgta---gaagcttgag-taagacaattggcattttgggcattctta
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    64218 461 -    117593 acaagtaaattaatctttcacagaatag-gaaaaaagcattgttgagcaaaataaattaaatgaaaagacat----------------------------------aaaaaaaataactagtgatgaaat-agcaataagaatggaaaacatgaaagagctgcttttaaagcaacattagaagcacaaaataactgtacttttcagaatcatactggagtccaaatcacttctaccacatctaattaaaaaacacagcgaaagatgttaaagtgaccaatggatgcccactgaatacctagttattgaaaaaaatcttgtttctagattggagttaaccatttccgcctaccacatcaaaccgaatcattgt-cgtgatgctaagctagttgcacagagagagatgtgagacacgttttc-ctaactg-caaagcaccctgattaggcacatatttttgta---gaagcttgag-taagacaattggcattttgggcattctta
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             13502 458 -    735854 acaagtaaattaatctttcacagaatag-aaaaaaagcattgttgagcaaaataaattaaatgaaaagacat-----------------------------------aaagaaataactagtgatgaaat-agcaataagaatggaaaacatgaaagagctgcttttaaagcaacattagaagcacaaaataactgtatttttcagaatcatactggagtccaaatcacttctaccacatctaattaaaaaacacagtgaaagatgttaaagtgatcaatagatgcccactgaatatctagttattg--aaaaatcttgtttctaaattggagttaaccatttccgcctaccacatcaaaccgaatcattgt-tgtgatgctaagctagctgcacagagagagatgtgagacacattttc-ctaactg-caaagcaccctgattaggcacatatttttgca---gaagcttgag-taagacaattggcattttgggcattctta
i manLeu1.NW_012107142v1          M 1500 C 0
s otoGar3.GL873550                17287777 468 -  18854210 gcaactgaattaaacttttacagaattg-gaaaaacaaagtgttaatcaaaataaattaaacagaaaaacattatttaaaaagtgtctcaataagagtgattaaaaaaatagaataaccaaggatggaataaaaaatatgaatggaaaatacaacagagctgct------------ttagaaaagc-------------ttttgagaatcatg-tagtatctgaatcactctgaccacatctcattagaaaacac--tgaaagatactaaatttattataggatgcccagtgagtaaccgtttttag--aaaaacctagttcctagattagagttaaccatttttgcctactgatcaaagcaaaattgttgt-cacaacgctaagctcagtgtgcagactcaggtttgagaca---tttatctaggtgacaaaggattc-gattaggtaaatatttttgaagatgaggttcaagagaaaaaaatcaacattttgggtgttctta
i otoGar3.GL873550                C 0 I 211
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e macNem1.NW_012012100v1             99791 2251 +   1495729 I

a score=40989.000000
s hg38.chr6_GL000254v2_alt         1296790 13 +   4827813 aacggaattagta
s panTro5.chr6                    30167660 13 + 175400573 aacggaattagta
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30398295 13 + 173848474 aacggaattagta
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             52408 13 +   2037526 aacggaattagta
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74733067 13 + 122973662 aaaggaattagaa
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30555745 13 + 172585720 aacggaattacaa
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      179012 13 +    231697 aacggaattacaa
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            212388 13 -    863181 aacggaattacaa
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    64679 13 -    117593 aacagaattacaa
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             13960 13 -    735854 aacggaattacaa
i manLeu1.NW_012107142v1          C 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e otoGar3.GL873550                17288245 211 -  18854210 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e macNem1.NW_012012100v1             99791 2251 +   1495729 I

a score=920785.000000
s hg38.chr6_GL000254v2_alt         1296803 222 +   4827813 gcttctgaggaaaaaGA----TAGTTATGATTGTaaaggcattattatacggcacc--agtcttgggactctttgatctagctactgtattttctcaactttcttgcaactcatcaaagagaacattaatattaaaggcatttgc-a-aaaaaa-tct-gagatattgttgtatctccattctc-----------------------------------tgtctcaaagttttattcatcactttacaaaagataattttaaagta-t
s panTro5.chr6                    30167673 227 + 175400573 gcttctgaggaaaaagaaagatagttatgattgtaaaggcattattatacggcacc--agtcttgggactctttgatctagctactgtattttctcaactttcttgcaactcatcaaagagaacattaatattaaaggcatttgc-a-aaaaaaatct-gagatattgttatatctccattctc-----------------------------------tgtctcaaagttttattcattactttacaaaagataattttaaagta-t
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30398308 226 + 173848474 gcttctgaggaaaaagaaagatagttatgattgtaaaggcattattatacggcacc--agtcttgggactctttgatctagctactgtattttctcaactttcttgcaactcatcaaagagaacattaatattaaaggcatttgc-a-aaaaaa-tct-gagatattgttatatctccattctc-----------------------------------tgtctcaaagttttattcattactttacaaaagataattttaaagta-t
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             52421 226 +   2037526 gcttctgaggaaaaagaaagatagttatgattgtaaaggcattattatacggcacc--agtcttgggactctttgatctagctactgtattttctcaactttcttgcaactcatcaaagagaacattaatattaaaggcatttgc-a-aaaaaa-tct-gagatattgttgtatctccattctc-----------------------------------tgtctcaaagttttattcattattttacaaaagataattttaaagta-t
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74733080 229 + 122973662 acttctgaggaaaaacaaagatagttatgactgtaaagccattattgtatggcaccaaagtcttgggactctttgatctagttactgtattttctcaactttcttgcagctcatcaaagagaatattaatattaaaggcatttgc-a-aaaaaagtct-gagatattgttgtatctcctttctc-----------------------------------tgtctcaaatttttattcattactttacaaaagataattttaaagta-t
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30555758 226 + 172585720 acttctgaggaaaaacaaagatagttatgattgtaaaggcattattgcatggcacc--agtcttgggactctttgatctagctgctgtattttctcaactttcttgcaactcgtcaaagagaacattaatattaaaggaatttgcaa-aaaaaa-tct-gagatattgttgtatctcctttctc-----------------------------------tgtctcaaatttttattcattactttacaaaagataattttaaagta--
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      179025 226 +    231697 acttctgaggaaaaacaaagatagttatgattgtaaaggcattattgcatggcacc--agtcttgggactctttgatctagctgctgtattttctcaactttcttgcaactcgtcaaagagaacattaatattaaaggaatttgcaa-aaaaaa-tct-gagatattgttgtatctcctttctc-----------------------------------tgtctcaaatttttattcattactttacaaaagataattttaaagta--
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            212401 226 -    863181 acttctgaggaaaaacgaagatagttatgattgtaaaggtattattgtatggcacc--agtcttgggactctttgatttagctgctgtattttctcaactttctttcaactcatcaaagagaacattaatattaaaggaatttgc-a-aaaaaa-tct-gagatattgttgtatctcctttctc-----------------------------------tgtctcaaatttttattcattactttacaaaagataattttaaagtat-
i cerAty1.NW_012002535v1          C 0 M 3250
s chlSab2.chr17_KE148042v1_random    64692 225 -    117593 acttctgaggaaaaacgaagatagttatgattgtaaaggcattattgtatggcacc--agtcttgggactctttgatctagctgctgtattttctcaacttccttgcaactcatcgaagagaacattaatattaaaggaatttgc-a-aaaaaa-tct-gagatattgttgtatctcctttctc-----------------------------------tgtctcaaatttttattcattactttacaaaagataattttgaagta--
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             13973 225 -    735854 acttctgaggaaaaacaaagatagttatgattgtaaaggcattattgtatggcacc--agtcttgggactctttgatctagctgctgtattttctcaactttcttgcaactcgtcaaagagaacattaatattaaaggaatttgc-a-aaaaaa-tct-gagatattgttgtatctcctttctc-----------------------------------tgtctcaaatttttattcattactttacaaaagatcattttaaagta--
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17288456 256 -  18854210 TCTTTT----AAAAACAAAGATAGTTATTATTTTACAGGTATAA----AAAGCACTGAAGCCTTGGAAAGATTTCATctggctactacatgttctcaatattgtagcaacttattgaagaaaacgttcttattaaagacatgtgc-atggaaaa-tgtagagatattactgtctctcctttctcagtctcagacttATGTAGCTCCTAATGCTCTGTGAtgtctcaaacttttaatcattactttg-aaaagagaagttaaaagca-t
i otoGar3.GL873550                I 211 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e macNem1.NW_012012100v1             99791 2251 +   1495729 I

a score=220243.000000
s hg38.chr6_GL000254v2_alt         1297025 58 +   4827813 taaagaaaatcagtcagatacaagaagtatttgatttacaaaatcctgaaacaataat
s panTro5.chr6                    30167900 58 + 175400573 taaagaaaattagtcagatacaagaagtatttgatttacaaaatcctgaaacaataat
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30398534 58 + 173848474 taaagaaaattagtcagatacaagaagtatttgatttacaaaatcctgaaacaataat
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             52647 58 +   2037526 taaagaaaattagtcagatacaagaagtatttgatttacaaaatcctgaaacaataat
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74733309 58 + 122973662 taaagaaaattagtcagatataagaagtatttgatttacaaaatcctgaaacaataat
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30555984 58 + 172585720 taaagaaaattagtcagatacaagaagcatttgatttacaaaatcctgaaacaataat
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      179251 58 +    231697 taaagaaaattagtcagatacaagaagcatttgatttacaaaatcctgaaacaataat
i macFas5.chr4_KE145577_random    C 0 C 0
s chlSab2.chr17_KE148042v1_random    64917 58 -    117593 taaagaaaattagtcagatacaagaagcatctgatttacaaaatcctgaaacaataat
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             14198 58 -    735854 taaagaaaattagtcagatacaagaagtatttgatttacaaaatcctgaaacaataat
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17288712 57 -  18854210 tacagaaaat-aatcagatgaaagaagtgtttgatttttaaaatccagaaacaataat
i otoGar3.GL873550                C 0 N 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e cerAty1.NW_012002535v1            212627 3250 -    863181 M
e macNem1.NW_012012100v1             99791 2251 +   1495729 I

a score=2250346.000000
s hg38.chr6_GL000254v2_alt         1297083 761 +   4827813 gttaaTtgtggtgccagctacttgggaggctgaaggaggagcattgatggcatgagcccaggaggttgaggcttcagtaagtcatgagcatgccactgcattccagccagggcaacagagtgatactttgtct-aaaaataactaactaactaactaac--------taactaaataaataaataaataaaTAATGGAGGCAGTGCATGAGCCCTGGTGAAGGGCACTTTGGCTGCATTGAGCACTTGCAGATTTGAGGTGATTAC--ATTCTGTACGTTACTTAACATGCACACTGTACATACTTaacatgcatataaattatttgatactcctccttgcagaggtgcagcttcattcccttcctgtgagtgtggcctgaacttaatgattcgcttacagactgatagagtaatgctgagataatagtttgtgactctgggtgtagatcataagactcactaagtctgggagcggtcgctcacggctgtaatc--------ccaacagtttgggaggtcaagagggtggatcatgaagtcagaagttcgagaccagcctggccaagacggtgaaaccccgtctctactaaaaatacaaaaattagccaggtgtggtggtgcatgcctgtaatcccagttgctcaggaggctgaggcaggagaatcacttgaacctggaagtcggaggttgcagtgagccaagatccagccactgcattccagcctgggtgacagggtgagactctgtctg-------a-----aaaaacaaacaaacaaa-------------caaacaaaaac
s panTro5.chr6                    30167958 759 + 175400573 gttaaTtgtggtgccagctacttgggaggctgaaggaggagcatggatggcatgagcccaggaggttgaggcttcagtgagtcatgagcatgccactgcattccagccagggcaacacagtgatacgttgtct-AAaaataactaactaactaaataaa----caaataaataaataaataaataaataaataaTGGAGGCAGTGCACGAGCCCTGGTGAAGGGCACTTTGGCTGCATTGAGCACTTGCAGATTTGAGGTAATTAC--ATTCTGTACATTACTTAACATGCATACCGTACATACTTaacatgcatataaattatctgatactcctccttgcagaggtgcagcttcattcccttcctgtgagtgtggcctgaacttaatgactcgcttacagactgatagagtaatgctgagttaatagtttgtgactctgggtgtagatcataagactcagtaagtctaggagcagtcgctcgtgcctgtaatc--------ccaacactttgggaggtcaagagggcggatcatgaagtcagaagttcgagaccagcctggccaagatggtgaaaccccgtctctactaaaaatacaaaaattagccaggtgtggtggtgcatgcctgtaatcccagttgctcaggaggctgaggcaggagaatcacttgaacctggaagtcggaggttgcagtgagccaagatccagccactgcattccagcctgggtgacagggtgagactctgtctc-------a-----aaaaacaaacaaacaaa-------------------aaaac
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30398592 756 + 173848474 gttaaTtgtggtgccagctacttgggaggctgaaggaggagcatggatggcatgagcccaggaggttgaggcttcagtgagtcatgagcatgccactgcattccagccagggcaacacagtgatacgttgtctaaaaaataactaactaactaactaac--------taactaaataaataaataaataaaTAATGGAGGCAGTGCACGAGCCCTGGTGAAGGGCACTTTGGCTGCATTGAGCACTTGCAGATTTGAGGTGATTAC--ATTCTGTACGTTACTTAACATGCATACCATACATACTTaacatgcatataaattatctgatactcctccttgcagaggtgcagcttcattcccttcctgtgagtgtggcctgaacttaatgactcgcttacagactgatagagtaatgctgagttaatagtttgtgactctgggtgtagatcataagactcagtaagtctaggagcagtcgctcgcgcctgtaatc--------ccaacactttgggaggtcaagagggcggatcatgaagtcagaagttcgagaccagcctggccaagatggtgaaaccccgtctctactaaaaatacaaaaattagccaggtgtggtggtgcatgcctgtaatcccagttgctcaggaggctgaggcaggagaatcacttgaacctggaagtcggaggttgcagtgagccaagatccagccactgcattccagcctgggtgacagggtgagactctgtctc-------a-----aaaaacaaacaaacaaa-------------------aaaac
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             52705 782 +   2037526 gttaaTtgtggtgccagctacttgggaggctgaaggaggagcattgatggcatgagcccaggaggttgaggcttcagtgagtcatgagcatgccactgcattccagccagggcaacagagtgttactttgtct-aaaaataactaactaactaactaactaactaactaactaactaaataaataaataaaTAATGGAGGCAGTGCACGAGCCCTGGTGAAGGGCACTTTGGCTGCATTGAGCACTTGCAGATTTGAGGTGATTAC--ATTCTGTACGTTACTTAACATGCATACTGTACATACTTaacatgcatataaattctctgatactcctccttgcagaggtgcagcttcattcccttcctgtgagtgtggcctgaacttaatgactcatttacagactgatagagtaatgttgagataatagtttgtgactctgggtgtagatcataagactcactaagtctgggagcggtcactcacacctgtaatc--------ccaacactttgggaggtcaagagggcagatcatgaagtcagaagttcgagaccagcctggccaagatggtgaaaccccgtctctactaaaaatacaaaaattagccaggtgtggtggtgcatgcctgtaatcccagttgctcaggaggctgaggcaggagaatcacttgaacctggaagtcggaggttgcagtgagccaagatccagccactgcattccagcctgggtgacagagtgagactctgtctc-------a-----aaaaacaaacaaacaaacaagaaaaaaaaacaaaaataaac
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74733367 759 + 122973662 gttaaTtgtggtgccagctacttgggaggctgaaggaggagcattgatcgcatgagtccaggaggtcgaggcttcagtgagtcatgagcgtgccactgcactccagccagggcagcagagtgatactttgtct-aaaaataactaactaac------------------------taaataaataaataaataaTAGAGGCAGTGCACGAGCCCTGGTGAAGGGCACTTTGGCTGCATTGAGCACTTGCAAATTTGAGGTGATTAC--ATTCTGTACGTTACTTAACATGCATACTGTGCATACTTaacatgcatataaattctttgatactcctccttgcagaggtgcagcttcattcccttcctgtgagtgtggcctgaacttaatgactcgcttacagactgatagagtaatgctgacataatagtttgtgactctgggtgtagatcataagactcactaagtctgggagtggtcgctcatgcctgtaatc--------ccaacactttgggaggtcaagagggtggatcatgaggtcagaagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaagatacaaaaattagccaggtgtggtggtgcatgcctgtaatcccagttgctcaggaggctgaggtaggagaatcacttgaacctggaagtcagatgttgcagtgagccaagatccagccactgcattccagcctgggtgacagtgtgagactccatctcaaaaaaaa-----aaaaacaaaaaaacaaa------acaaaacaaaacaaaaaa
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30556042 754 + 172585720 gttaaTtgtggtgccagctacttgggaggctgaaggaggagcattgttcgcatgagcccaggaagttgaggcttcagtgagtcatgagcgtgccactgcattgcagccagggcagcagagtgatactttgtcc-aaaaataactaactaactaac----------------taactaaataaataaataaataataaAGGCAGTGCATGAGCACTGGTGAAGGGCACTTTGGCTGCATTGAGTGCTTGCAAATTTGAGGTGATTAC--ATTCTGTACATTACTTAACATGCATACTGTACATACTTaacatgcacataaattctttgatactcctccttgcagaggtgcagcttcattcccttcctatgagtgtggcctgaacttaatgactcacttacagactgatagagtaatgctgacataatagtttgtgactctgggtatagatcataagactcactaagtctgggaatggtcgctcacgcctgtaatc--------tcaacactttgggaggtcaagagggcagatcatgaggtcagaagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggtgtgttggtgcatgcctgtaatcccagttgctcaggacactgagggaggagaattgcttgaacctggaagtcagaggttgcagtgaaccaagatccaaccactgcgtaccagcctgggtgacagggtgagactctgtctc-------a-----aaaacgaaacaaaacaa------------acaaacaaaaaa
i rheMac8.chr4                    C 0 I 5
s macFas5.chr4_KE145577_random      179309 774 +    231697 gttaaTtgtggtgccagctacttgggaggctgaaggaggagcattgatcgcatgagcccaggaggttgaggcttcagtgagtcatgagcatgccactgcattgcagccagggcagcagagtgatactttgtcc-aaaaataactaactaactaactaac----taactaaataactaaataaataaataaataataaaGGCAGTGCATGAGCACTGGTGAAGGGCACTTTGGCTGCATTGAGTGCTTGCAAATTTGAGGTGATTAC--ATTCTGTACATTACTTAACATGCATACTGTACATACTTaacatgcacataaattctttgatactcctccttgcagaggtgcagcttcattcccttcctatgagtgtggcctgagcttaatgactcacttacaaactgatagagtaatgctgacataatagtttgtgactctgggtatagatcataagactcactaagtctgggagtggtcgctcacacctgtaatctcaacacttcaacactttgggaggtcaagagggcagatcatgaggtcagaagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggtgtgttggtgcatgcctgtaatcccagttgctcaggacgctgagggaggagaattgcttgaacctggaagtcggaggttgcagtgaaccaagatccaaccactgcataccagcctgggcgacagggtgagactctgtctc-------a-----aaaacaaaacaaaacaa------------acaaacaaaaaa
i macFas5.chr4_KE145577_random    C 0 I 4
s chlSab2.chr17_KE148042v1_random    64975 765 -    117593 gttaaTtgtggtgccagctacttgggaggctgaaggaggtgcattgatcgcatgagcccaggaggttgaggcttcagtgagtcatgagcgtgccactgcatggcagccagggcagcagagtgatactttgtct-aaaaataaatcactaactaactaac----taaataaataaataaataaataaataaataataaaGGCAGTGCATGAGCACTGGTGAAGGGCACTTTGGCTGCATTGAGTGCTCGCAAATTTGAGGTGATTACATATTCTGTACATTACTTAACATGCATACTGTACATACTTaacatgcacataaattctttgatactgctccttgcagaggtgcagcttcattcccttcctatgagtgtggcctgaacttaatgactcacttacaaactgatagagtaatgctgacataatagtttgtgactctgggtatagatcataagactcactaagtctgggagtggtcactcatgcccgtaatt--------ccaatactttgggaggtcaagagggcagatcatgaggtcagaagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagtcaggtgtgttggtgcatgcctgtaatcccagttgctcaggacactgagggaggagaattgcttgaacctggaagtcggaggttgcagtcaaccaagatccagtcactgcataccagcctgggcgacagggcttgagactgtctc-------a-----aaaacaaaacaaaaca---------------aaacaaaaac
i chlSab2.chr17_KE148042v1_random C 0 I 1
s manLeu1.NW_012107142v1             14256 757 -    735854 gttaaTtgtggtgccagctacttgggaggctgaaggaggagcattgatcgcgtgagcccaggaggttgaggcttcagtgagtcatgagcatgccactgcattgcagccagggcagcagagtgatactttgtcc-aaaaataactaactaactaactaac------------taactaaataaataaataaataataaaGGCAATGCATGAGCACTGGTGAAGGGCACTTTGGCTGCATTGAGTGCTTGCAAATTTGAGGTGATTAC--ATTCTGTACATTACTTAACATGCATACTGTGCATACTTaacatgcacataaattctttgata---ctccttgcagaggtgcagcttcatacccttcctatgagtgtggcctgaacttaatgactcacttacaaactgatagagtaatgctgacataatagtttgtgactctgggtatagatcataagactcactaagtctgggagtggtcactcacgcctgtaatt--------ccaacactttgggagatcaagagggcagatcatgaggtcagaagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccgagtgtgttggtgcatgcctgtaatcccagttgctcaggatgctgagggaggagaattgcttgaacctggaagtcggaagttgcagtgaaccaagatccagccactgcataccagcctgggcgacagggtgagactctgtctc-------aaaaacaaaacaaaacaaaaca---------------aaacaaaaac
i manLeu1.NW_012107142v1          C 0 I 1
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e cerAty1.NW_012002535v1            212627 3250 -    863181 M
e macNem1.NW_012012100v1             99791 2251 +   1495729 I

a score=2817820.000000
s hg38.chr6_GL000254v2_alt         1297844 787 +   4827813 tcactgcagcttctactttggttctggttttctctttctctgggatcatgagccttgggggaagccagc---tgctgtgtcataagcaggcctgtggaaagctccaagtgactaggaagtgaggcctcctggggccagacaataagaagatgaagcctcttccaacagccatgtgggatattcttgtgacttgtgaatccccagccccatttgagccctcagatgataaagccctggatgacaactagaccgcaattttgtgagtggccctgagccagaagaactttgagaaacctttcctggattcctgacaactagaaactgtggaacatgacaaatatttgttgatttgagttgctaagttttaagtgacttgttatgcatcagtagataactaatacaCCTTCACAAGAAAGGATGAATCATTGAA-TTTTTCATTTGCTCTAAATTGATTATAAGATATTAAACATGTCATTTGCTTTTAATATTTAACAAGAATTTTCATGGTTATATAAGATATATTTTATTATCACTAACAATGA-------TCTATTATTTTT----ACCTTCAATTTGTATGTTCTATTCAAACACAAAAGGAAGATCCAGGCTATGCTAGGGTGattctatgatgacaccccaataaccacccttggttactcacattaccccagttactctgttgacactaatgtaagtgctgctgtgaagggattttgcagatgtattccaggtcccctgtcagttggctttaagatggggattatcctgcttggacggtcctaatcaggtaagctctg
s panTro5.chr6                    30168717 788 + 175400573 tcactgcagcttctactttggttctggttttctctttctctgggatcatgagccttgggggaagccagc---tgctgtgtcataagcaggcctgtggaaagctccaagtgactaggaagtgaggcctcctggggccagacaataagaagatgaagcctcttccaacagccacgtgggatattcttgtgacttgtgaatccccagccccatttgagccctcagatgttaaagccctggatgacaactagaccacaattttgtgagtggccctgagccagaagaactttgagaaacctttcctggattcctgaccactagaaactgtgagacatgataaatatttgttgatttgagttgctaagttttaagtgacttgttatgcatcagtagataactaatacaCCTTCACAAGagaggatgaatcactgaa-tttttcatttgctctaaattgattataagatattaaacatgtcatttgcttttaatatttaacaagaattttcatggttatataagatatattttattatcactaacaatga-------tctatttttttt---taccttcaatttgtatgttctattcaaacacaaaaggaagatccaggctATGCTAGGGTGattctatgatgacaccccaataaccacccttggttactcacattaccccagttactctgttgacactaatgtaggtgctgctgtgaagggattttgcagatgtattccaggtctcctgtcagttggctttaagatgaggattattctgcttagacggtcctaatcaggtaagctctg
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30399348 787 + 173848474 tcactgcagcttctactttggttctggttttctctttctctgggatcatgagccttgggggaagccagc---tgctgtgtcataagcaggcctgtggaaagctccaagtgactaggaagtgaggcctcctggggccagacaataagaagatgaagcctcttccaacagccacgtgggatattcttgtgacttgtgaatccccagccccatttgagccctcagatgttaaagccctggatgacaactagaccacaattttgtgagtggccctgagccagaagaactttgagaaacctttcctggattcctgaccactagaaactgtgagacatgataaatatttgttgatttgagttgctaagttttaagtgacttgttatgcatcagtagataactaatacaCCTTCACAAGagaggatgaatcactgaa-tttttcatttgctctaaattgattataagatattaaacatgtcatttgcttttaatatttaacaagaattttcatggttatataagatatattttattatcactaacaatga-------tctatttttttt----accttcaatttgtatgttctattcaaacacaaaaggaagatccaggctATGCTAGGGTGattctatgatgacaccccaataaccacccttggttactcacattaccccagttactctgttgacactaatgtaggtgctgctgtgaagggattttgcagatgtattccaggtctcctgtcagttggctttaagatgaggattattctgcttagacggtcctaatcaggtaagctctg
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             53487 785 +   2037526 tcactgcagcttctactttggttctggttttctctttctctgggatcatgagccttgggggaagccagc---tgctgtgtcataagcaggcctgtggaaagctccaagtgactaggaagtgaggcctcctggggccagacaataagaagatgaagcctcttccaacagccacgtgggatattcttgtgacttgtgaatccccagccccatttgagccctcagatgataaagccctggatgacaactagaccgcaattttgtgagtggccctgagcc---agaactttgagaaaactttcctggattcctgaccactagaaactgtgggacatgataaatatttgttgatttgagttgctaagttttaagtgacttgttatgcatcagtagataactaatacaCCTTCACAAGagaggatgaatcattgaa-tttttcatttgctctaaattgattataagatattaaacatgtcatttgcttttaatatttaacaagaattttcatggttgtataagatatattttattatcactaacaatga-------tcaatttttttt---taccttcaatttttatgttctattcaaacacaaaaggaagatccaggctATGCTAGGGTGattctatgatgacaccccaataaccacccttggttactcacattaccccagttactcggttgacactaatgtaggtgctgctgtgaagggattttgcagatgtattccaggtcccctgtcagttggctttaagatggggatcatcctgcttggactgtcctaatcaggtaagctctg
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74734126 789 + 122973662 aaccggcagcttctactttggttctggttctctctttctctgggatcatgagccttggggcaagccagc---tgctgtgtcataagcaggcctgtggaaagctccaagtgactaggaagtgaggcctcctgcggccagacaat---aagatgaagcctcttccaacagtcacgtgggatattcttgtgtcttgtgaatccccagccctatttgagccctcagatgataaagccctggatgacaactagactgcaacgttgtgagaggccctgagtcagaagaactttgacaaacctctcctggattcctgaccactagaaactgtgggacatgaaaaatatttgttgatttgagttgctaagttttaagtgacttgtcatgcatcagtagataactaatacaCCTTCACAAGAGAGGATGAATCATTGAACTTTTTCATTTGCTCTAAATTGATTATAAGATACTAAATATGTCATTTGCTTTTAATATTTAAGAAGAATTTTCATGGCTATATAAGATCTATTTTATTATCATTAACAACGA-------TCTATTTTTTTTTTTTACCTTCAATTTGTATGTTCTATTCAAACACAAAAGGAAGATCCAGGCtatgctgggctgattctatgatgacaccccaataaccacccttggttactcacgttaccccagttactcaggtgacactaatataggtgcttctgtgaagggattttgcagttatatttcaggtgccccatcagttgactttaagatggggattatcctactgggactgtcctaatcaggtaagctctg
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30556801 783 + 172585720 tcactgcagcttctacttcggttctggttctttctttctctgggatcataagccttgggggaaaccagc---tgctgtgtcacaagcaggcctgtggaaaggtccaggtgacaaggaagtgaag----ctggggccagacaataagaagatgaagcctcttccaacagccacgtgggggattcttgtgtcttgtgaatccccagccccatttgagtcctcagaagataaagccc-ggatgacaactagactgcaacgttgtgagaggccctgaaccagaagcactcagagaaaccgctcctggattcctgaccactagaaactgtgggacatgataaatatttgttgatttgagttgctaagttttaagtgatttgttatgcagcagtagataactaatataCCTTcccaagagaggatgaatcattgaactttttcatttgctctaaattgattataagatattaaacatgtcatttgcttttaatatttaaaaagaattttcatgactatataagatctattttattatcattaacaatga-------tttttttTTTTT----ACCTTCAATTTGTATGTTCTATTCAAACACAAAAGGAAGATCCAGGCTATACtaggctgattctatgatgacacctcagtaactacccttggttactcacgttaccccagttactcagttgacactaatgcaggtgctgctgtgaaggagttttgcagatagatttcaggtccccagtcagttgacttgaagatggggattatcctgcttggactgtcctaatcaggtaagctctg
i rheMac8.chr4                    I 5 C 0
s macFas5.chr4_KE145577_random      180087 787 +    231697 tcactgcagcttctacttcggttctggttctttctttctctgagatcatgagccttgggggaaaccagctgttgctgtgtcataagcaggcctgtggaaaggtccaggtgacaaggaagtgaag----ctggggccagacaataagaagatgaagcctcttccaacagccacgtgggggattcttgtgtcttgtgaatccccagccccatttgagtcctcagatgataaagccctggatgacaactagactgcaacgttgtgagaggccctgagccagaagcactcagagaaacagctcctggattcctgaccactagaaactatgggacatgataaatatttgttgatttgagttgctaagttttaagtgatttgttatgcagcagtagataactaatataCCTTCCCAAGAGAGGATGAATCATTGAACTTTTTCATTTGCTCTAAATTGATTATAAGATATTAAACATGTCATTTGCTTTTAATATTTAAAAAGAATTTTCATGACTATATAAGATCTATTTTATTATCATTAACAATGA-------TTTTTTTTTTTT----ACCTTCAATTTGTATGTTCTATTCAAACACAAAAGGAAGATCCAGGCTATACtaggctgattctatgatgacacctcagtaactacccttggttactcacgttaccccagttactcagttgacactaatgcaggtgctgctgtgaaggagttttgcagatagatttcaggtccccagtcagttgacttgaagatggggattatcctgcttggactgtcctaatcaggtaagctctg
i macFas5.chr4_KE145577_random    I 4 C 0
s macNem1.NW_012012100v1            102042 734 +   1495729 tcactgcagcttctactt------tggttctctctttctctgggatcatgagccgtgggggaagctggc---tgctgtgtcataagcaggcctgtggaaaggtccatgtgactagg-agtgaggcctcctgggaccagacaagaagaacctgaagcctcttccaacagccatgtgagagattcttgtgtcttgtgaatccccaggcccatctgagccctcagatgattcagccctggatgacaactggactgcaactttgtgagaggccctgagtcagaagcatccagagaaacctctcctgcattcctgaccattggaagatgtgccagatggcaaatatttgttgatttgagctactaagtttgaggtgacttg----------------------------------------------tCGTTGAACtttttcatttgctctaaattcattataagatactaaacatgtcatttgcttttaatatttaataaaaatttacatggctatataagatatattttattatcattaaccatga--------tctattttttt----atcttcaatttgtatgttctatttaaacacaaaaggaagatccaggctatggtaggctgattttatgatgacacctcaataaccacccttggttactcacgttaccccagttactcagttgacactaatgcaggtgctgctgtgaaggggttttgcagatagatttcaggtccccggtcagttgacttgaagatggggattatcttgcttggactgtcctaatcaggtaagctctg
i macNem1.NW_012012100v1          I 2251 C 0
s chlSab2.chr17_KE148042v1_random    65741 790 -    117593 tcactgcagcttctatttcggttctgtttctttctttcactgggatcatgagccttgggggaaaccagc---tgctgtgtcataagcaggcctgtggaaaggtccaggtgacaagaaagtgagg----ctggggccagacaataagaagatgaagcttcttccaacagccacgtgggggattcttgtgtcttgtgaatccccagccccatttgagccctcagatgataaagccctggatgacaactagactgcaacgttgtgagaggccctgagtcagaagcactcagagaaacggctcctggattcctgaccactagaaactgtgggacatgataaatatttgttgatttgagttgctaagttttaagtgacttgttatgcagcagtacataactaatacaCCTTCCCAAGAGAGGATGAATCATTGAACTTTTTCATTTGCTCTAAATTGATTATAAGATATTGAATATGTCATTTGCTTTTAATATTTAAGAAGAATTTTCATGACTATATAAGATCTATTTTATTATCATTAACAATGATCTA-TTTTTTTTTTTTTT----ACCTTCAATTTGTATGTTCTATTCAAACACAAAAGGAAGATCCAGGCtatgctaggctgattctatgatgacacctcaataactacccttggttactcacgttaccccagttactcagctgacactaatgcaggtgctgttgtgaaggagatttgcagatagatttcaggtccccagtcagttgacttgaagatggggattatcctgcatggactgtcctaatcaggtaagctctg
i chlSab2.chr17_KE148042v1_random I 1 C 0
s manLeu1.NW_012107142v1             15014 789 -    735854 tcactgcagcttctactccggttctggttctttctttctctgggatcatgagccttgggggaaaccggc---tgctgtgtcataagcaggcctgtggaaaggt-caggtgacaaggaagtgaag----ctggggccagacaataagaagatgaagcttcttccaacagccacgttggggattcttgtgtcttgtgaatccccagccccatttgagtcctcagaagataaagccc-agatgacaactagactgcaacgttgtgagaggccctgagccagaagcactcagagaaacggctcctggattcctgaccactagaaactgtgggacatgataaatatttgttgatttgagttgctaagttttaagtgactttttatgcagcagtacataactaatacaCCTTCACAAGagaggatgaatcattgaactttttcatttgctctaaattgattataagatattaaacatgtcatttgcttttaatatataagaagaattttcatgactatataagatctattttattgtcattaacaatgatctattttttttttttttt----accttcaatttgtatgttctagtcaaacacaaaaggaagatccaggctatgctaggctgatattatgatgacacctcaataaccacccttggttactcacgttaccccagttactcagttgacactaatgcaggtgctgctgtgaaggggttttgcagatagatttcaggtccccagtcagatgacttgaagatggggattatcctgcttggactgtcctaatcaggtaagctctg
i manLeu1.NW_012107142v1          I 1 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e cerAty1.NW_012002535v1            212627 3250 -    863181 M

a score=3816412.000000
s hg38.chr6_GL000254v2_alt         1298631 901 +   4827813 aaaaggactgggttcttcctgacaatagagactcacagtgtgagagggattcagcgtgaggggcttcctccactgtgggctttgaaaatggtgggatcatg-gggaaagaacactggtggccaataggaattagaaaccctccccactgtctactctgatagcccg-aaggaaacagggaccttaatcctacaattgccagaaaccgaattctgccaacaaactctacataagcttgggggagaaccccaatcttaagatgaggatacagctttgcgaaactctgaacaaagagtctat-cacattaggcctggatttctgatgaaggaaatgcagacaaataaatgagtgttcttttaagccactaagtttgtggtaattggttatgtact-------------aatagaaaattcataAACAGATTCAACAGCTAGGCATATGACATTTTCTCCAAtggaatgaatttatgaactgatatgcatagtagttgcataaaaccaaatgtttcctaacttgctttgcatttttcattttgtgatttttgtgcgatacaatttttaaCACAATCATAT----ttcattcattcaagaa-aattaacttagt--------tgtgccagatatgcttttatatgctgcagacacaactttgatcaaaacaacccaaagcccctgtgctcatgtgccttccattctagACGCTTCTTGAgagtgagatggagtcattggagtgttttaagtgaagaaatgacacaatctgactcacattagcaggatttctgaccattgtt-gggagaacagtcatgggcagcaggtgaggggacagagCTAGGGCCACAATTCAGTAGTGACAGAGTAGTAGAGACTAAGGGGAGAGGAGGGCCTGATGGGTG---------------------------------------------------ACAGGGACAGAGAGAAGGGCTGGAGAAGCAGG
s panTro5.chr6                    30169505 909 + 175400573 aaaaggactgggtacttcctgagaatagagactcacagtgtgagagggattcagtgtgaggggcttcctccactgtgggctttgaaaatggtgggatcatg-gggaaagaacactggtggccaataggaattagaagccctccccactgtctactctgatagcctg-aaggaaacagggaccttagtcctacaattaccagaaaccgaattctgccaacgagctctatataagcttgggggagaatcccaatcttaagatgaggatacagctttgcgaaaccctgaacaaagaatctct-gacactaggcctggatttctgatgaaggaaatgcagaaaaataaatgagtgctcttttaagccactaagtttgtggtaattggttatgtact-------------aatagaaaattcataaacagattcaacagctaagcatatgacattttctccaatggaatgaatttatgaactgatatgcatagtagttgcataaaaccaaatgtttcctaacttgctttgcatttttcattttgtgatttttgtgtgatacaatttttaacacaatcatat----ttcattcattcaagaa-aattaacttagtgcctactatgtgccagatatgcttttatatgctgcagacacaactttgatcaaaacaacccaaagtccctgtgctcatgtgccttccattctagaggcttcttgagagtgagatggagtcattggagtgttttaagtgaagaaatgacacaatctgactcacattagcaggatttctgaccattgtg-gggagaacagtcatgggcagcaggcgaggggacagagCTAGGGCCACAATTCAGTAGTGACAGAGTAGTAGAGACTAAGGGGAAAGGAGGGCCTGATGGGTG---------------------------------------------------ACAGGGACAGAGAGAAGGGCTGGAGAAGCAGG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30400135 909 + 173848474 aaaaggactgggtacttcctgagaatagagactcacagtgtgagagggattcagtgtgaggggcttcctccactgtgggctttgaaaatggtgggatcatg-gggaaagaacactggtggccaataggaattagaagccctccccactgtctactctgatagcctg-aaggaaacagggaccttagtcctacaattaccagaaaccgaattctgccaacgagctctatataagcttgggggagaatcccaatcttaagatgaggatacagctttgcgaaaccctgaacaaagaatctct-gacactaggcctggatttctgatgaaggaaatgcagaaaaataaatgagtgctcttttaagccactaagtttgtggtaattggttatgtact-------------aatagaaaattcataaacagattcaacagctaagcatatgacattttctccaatggaatgaatttatgaactgatatgcatagtagttgcataaaaccaaatgtttcctaacttgctttgcatttttcattttgtgatttttgtgtgatacaatttttaacacaatcatat----ttcattcattcaagaa-aattaacttagtgcctactatgtgccagatatgcttttatatgctgcagacacaactttgatcaaaacaacccaaagtccctgtgctcatgtgccttccattctagaggcttcttgagagtgagatggagtcattggagtgttttaagtgaagaaatgacacaatctgactcacattagcaggatttctgaccattgtg-gggagaacagtcatgggcagcaggcgaggggacagagCTAGGGCCACAATTCAGTAGTGACAGAGTAGTAGAGACTAAGGGGAAAGGAGGGCCTGATGGGTG---------------------------------------------------ACAGAGACAGAGAGAAGGGCTGGAGAAGCAGG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             54272 907 +   2037526 aaaaggactgggttcttcctgagaatagagactcacagtgtgagagggattcagtgtgaggggcttcctccattgtgggctttgaaaatggtgggatcatg-gggaaagaacactggtggccaataggaagtagaagccctccccactgtctactctgattgcctg-aaggaaacagggaccttagtcctacaattaccagaaaccgaattctgccaacgagctctatataagcttgggggagaatcccaatcttaagatgaggatacagctttgcgaaaccctgaacaaagaatctct-gacactaggcctggatttctgatgaaggaaatgcagacaaataaatgagtgctcttttaagccactaagtttgtggtaattggttaagtact-------------aatagaaaattcataaacagattcaacagctaagcatatgacattttctccaatggaatgaatttatgaactgatatgcatagtagctgcataaaaccaaatgtttcctaacttgctttgcatttttcattttgtgatttttgtgtgatacaatttttaacacaatcatat----ttcattcattcaagaa-aattaacttagtgcctactatgtgccagatatgcttttatatgctgcagacacaactttgatcaaaacaacccaaagcccctgtgct--tgtgacttccattctagaggCTTCTTGAgagtgagatggagccattggagtgttttaagtgaagaaatgacacaatctgactcacattagcaggattgctgaccattgtt-gggagaacagtcatgggcagcaggcgaggggacagagCTAGGGCCACAATTCAGTAGTGACAGAGTAGTAGAGACTAAGGGGAGAGGAGGGCCTGATGGGTG---------------------------------------------------ACAGGGACAGAGAGAAGAGCTGGAGAAGCAGG
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74734915 921 + 122973662 aaaaggactgggttcctcctgagaatagagactcacagtgtgagagggattcagtgtgaggggcttcctccactgtgggctttgaaaatggagggatcatg-gggaaagaacaccggtggccaataggaattagaagcccttcccactgtctactctgatagcctg-aaggaaacagggaccttagtcctacaattaccagaaaccgaattctgccaacgagctctatataagcttgggggagaa-cgcaatcttaagatgagcatacagctttgcgaaaccctgaacaaagaatctct-cacactaggcctgcagttctgatgaaggaaatgcagacaaataaatgtgtgctctttaaagccactaagtttgtggtaagtggttatgtaCTACCAATTTTTATGAATAGAAAATTCATAAACAGATTCAACAGCTAAGCATATGACATTTTCTCCactggaatgaatttatgaacagatatgcatagtagttgcataaaaccaaatgtttcctaacttgctttgcatttttcattttgtgatttttgtgtgatacaatttttaacacaataatat----ttcattcattcaagaa-aattaacttagtgcctactatgtgccagatatgcttttatatgctgcagacacaactttgatcaaaacaacccaaagcccctgtgctcatgtgccttccattctagaggCTTCTCGAgagtaagatggagccattggggtgttttaagtgaagaactgacacaatctgactcacattagcaggatttctgaccattgtg-gggagaacagtcacgggcagcaggcgagggGACAGAGCTAGGGCCACAATTCAGTAGTGACAGAGTAGTAGAGACTAAGGGGAGAGGAGGGCCTGATGGGTG---------------------------------------------------ACAGGGACAGACAGAAGGGCTGGAGAAGCAGG
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30557584 905 + 172585720 aaaaggactgggttcttcctgagaacagagactcacagtgt-agaggggttcagtgtgaggggtttccttcactgtgggctttgaaaatggagggattatg-gggaaagaacactggtggccaataggaattagaggcccttcccactgtctactctgatagcgtg-aaggaaacagggaccttagtcctacaattaccagaaaccgaattctgccaacaagctctatataagattgggagagaatcacaatcttaag-tgagcatacagctttacaaaaccctaaacaaagaatctgt-cacactaggcctggatttctgatgaaggaaatgtagacaaataaatgggtgctgttttaagccactaaatttgtggtaattggttatgtact-------------aatagaaaattaataAACAGATTCAATAGCTAAACATATGACAtgttctccactggaaagaatttatgaactgatatgcacagtagttgcataaaaccaaacgtttcctaacttgctttgcatttttcattttgtgatttttgtgtgatgcaatttttaacacaatcatat----ttcattcattcaagaa-aattaacttagtgcctactatgggccagatatgcttttatattctgcagacacaactttgatcaaaacaacccaaagcccctgtgct--tgtgccttccattctagaggCTTCTTGAgagtgagatggagccattggagggttttaaatgaagaaatgacacaatctgactcacattagcagaattgctgaccactgtg-ggggaaacagtcatgagcagcaagcgagggggcagagCTAGGGCTACAATTCAGTAGTGACAGGGTAATAAAGACTAAGGGGAGAGGAGGGCCTGAGGGATG---------------------------------------------------ACAGGGACAGAGAGAAGGGCTGGAGAAGCAGG
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      180874 905 +    231697 aaaaggactgggttcttcctgagaacagagactcacagtgt-agaggggttcagtgtgaggggtttccttcactgtgggctttgaaaatggagggattatg-gggaaagaacactgatggccaataggaattagaggcccttcccactgtctactctgatagcgtg-aaggaaacagggaccttagtcctacaattaccagaaaccgaattctgccaacaagctctatataagattgggagagaatcacaatcttaag-tgagcatacagctttacaaaaccctaaacaaagaatctgt-cacactaggcctggatttctgatgaaggaaatgtagacaaataaatgggtgctgttttaagccactaaatttgtggtaattggttatgtact-------------aacagaaaattaataAACAGATTCAATAGCTAAACATATGACAtgttctccactggaaagaatttatgaactgatatgcacagtagttgcataaaaccaaacgtttcctaacttgctttgcatttttcattttgtgatttttgtgtgatgcaatttttaaCACAATCATAT----ttcattcattcaagaa-aattaacttagtgcctactatgtgccagatatgcttttatattctgcagacacaactttgatcaaaacaacccaaagcccctgtgct--tgtgccttccattctagaggCTTCTTGAgagtgagatggagccattggagggttttaagtgaagaaatgacacaatctgactcacattagcagaattgctgaccactgtg-ggggaaacagtcatgagcagcaagcgagggggcagagCTAGGGCTACAATTCAGTAGTGACAGGGTAATAGAGACTAAGGGGAGAGGAGGGCCTGATAGGTG---------------------------------------------------ACAGGGACAGAGAGAAGGGCTGGAGAAGCAGG
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1            102776 909 +   1495729 aaaaggactgggttcttcctgagaacagagactcacagtgt-agaggggttcagtgtgaggggtttcccccactgtgggctttgaaaatggagggatcatg-gggaaagaacactggtggccaataggaattagaaactctccccactgtctactctgatagcccg-aaggaaacagggaccttagtcctacaattgccagaaaccgaattctgccaacaagctttacataagcttgggggagaatcacaatcttaag-tgagcatacagctttacaaaaccctaaacaaagaatctgt-cacactaggcctggatttctgattaaggaaatgtagacaaataagtgggtgctgttttaagccactaagtttgtggtaattggttatgtact-------------aatagaaaattaataaacagattcaatagctaaacatatgacatgttctccactggaatgagtttatgaactgatatgcacagtagttgcataaaaccaaacgtttcctaacttgctttgcatttttcattttgtgatttttgtgtgatgcaattttcaacacaattgtatttcattcattcattcaagac-aattcacttagtgcctactatgtgccagatatgcttttatatgctgcagacacaactttgatcaaaacaacccaaagtccctgtgct--tgtgccttccattctagaggCTTCTTGAgagtgagatggagccattggagggttttaagtgaagaaatgacacaatctgactcacattagcaggattgctgactattgtg-ggggaaacagccatgggcagcaggagaggggacagagctagggccacaattcagtagtgacagggtagtagagactaaggggagaggaggacctgagtgatg---------------------------------------------------acagggacagagagaagggctggaGAAGCAGG
i macNem1.NW_012012100v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    66531 906 -    117593 aaaaggaccgggttcttcccgagaacagagactcacagtgt-agaggggttcagtgtgaggggtttcctccactgtgggctttgaaaatggagggatcatg-ggaaaagaacaccggtggccaataggaattagaaactctccccactgtctactctgatagcccg-aaggaaacagggaccttagtcctacaattaccagaaaccaaattctgccaacgagctctatataagattgggggagaaccccaatcttaagatgagggtacagctttgcaaaaccctgaacaaagaatctct-cacactaggcctggatttctgatgaaggaaatgtagacaaataaatgagtgctcttttaagccactaagtttgtggtaattggttatgtact-------------aatagaaaattaataAACAGATTCAACAGCTAAACATATGACATTTTCTCCATTGAAATGAATTTATGAACTGATATTCATAGTAGTTGCATAAAAACATATGTTTCCTAACTTACTTTGCATTTTTCATTTTGTGATTTTTGTGTGACGCAATTTTTAACACAATCATAT----ttcattcattcaagaa-aattaacttagtgcctactatatggcagatatgcttttatattctgtagacacaactttgatcaaaacaacccaaagcccctgtgct--tgtgccttccattctagaggCTTCTTGAgagtgagatggagccattggagggttttaagtgaagaaatgacacaatctgactcacattagcagaattgctgaccactgtg-ggggaaatagtcatgggcagcaggagaggggacagagCTAGGGCCACAATTCAGTAGTGACATGGTAGTAGAGACTAAGGGGAGAGGAGGGCCTGATGGGTG---------------------------------------------------ACAGGGACAGAGAGAAGGGCTGGAGAAGCAGG
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             15803 907 -    735854 aaaaggactgagttcttcctgagaacagagactcacagtgt-aggggcattcagtgtgaggggtttcctccactgtgggctttgaaaatggagggatcatg-gggaaagaacactggtggccaataggaattagaggcccttcctgctgtctaccctgatagcccg-aaggaaacagggaccttagtcctacaatggccagaaaccgaattctgccaacgagctctatataaacttgggggagaatcccaatcttaagatgagcatacacctttgcgaaactctgaacaaagaatctgt-cacactaggcctgtatttctgatgaaggaaatgtagacaaataaatgagtgctcttttaagccactaagtttgtggtaattga-tatgtact-------------aatagaaaattagt-aACAGATTCAATAGCTAAACATATGACAtgttctccactggaatgagtttatgaactgatatgcacaatagttgcataaagccaaacgtttcctaacttgctttgcatttttcattttgtgatttttgtgtgatgcaatttttaacacaatcatatttcattcattcattcaacaa-aattaacttagtgcctactatgtggcagatatgcttttatattctgtagacacaactttgatcaaaacaacccaaagcccctgtgct--tgtgccttccattctagaggCTTCTTGAgagtgagatggagccattggagggttttaagtgaagaaatgacacaatctgactcacattagcaggattgctgaccattgtg-gggggaacagctatgggtagcaggagaggagacagagctagggccacaattc-gtagttacagggtagtagagactaaggggagaggaggacctgagtgatg---------------------------------------------------acagggacagagagaagggctggaGAAGCAGG
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17400667 926 -  18854210 aaaaagactaggtcaactctgagcaccca-attcacagagagagagggactcaatgtgagt-----------ctttggactttgaaagtgaagaattcctgtggcaaagagtgttggtggc--------------agccctccc--ccacctaccctgacagatggtaatcaaacagggacctcattcctacaactgccagaaactgaattctgcccatgggctccatgtaagcttaggggaggaccccaatctcaagatgacggcacagctttgtgaaaccctgaacagagaacccatccacaccatgcctggatttctgactaaggagcactaaacaaataaatggcccttgtttagagacaatacatttgtggtaatttagtatataga-------------aatagaaaattaatacaCAAGCTCAATAGATAGGCACGTAAC--TTTTTTAATTTGAATGAATTTATGAACTTGTATTCA-ATTATTTGCATGAAATAAAATATTTCCTAACTATTTCAGTATGTTTAAGTTTATGATTTTTAGGTGATTCAATTTT-ACTGAAAACATa-----ttaattcattcaacaataattaacttact-cctattatgtaccatgtatgtctttccactctggggatataattttcaccaaaatagcccaaagcctctgtgttcatgtgccttaccttccagaggCTTTACAAGAGTGAGGTCAACCCATTGGAGCGCTGTAAGTGAA-AAATAACAGAATCTGACTCTCAGCAACAG-ACCGGTGACCACTGTGAGGGAGAACAGTCATGAGCACCAGGTGAGGGGACAAAGCTAGTGCCATAGTTCAGGAGT--CAGAGATGGTGGGACTAAGGGAAGAAG-GGGCCTGAGGGATGAGAGGGAGCAGAGATACATGTGCCATATGCAGCAGGAGGGGCAGAGGCATAAGAGGGACAGAGGGAAGGGCTAGAGAAGCAGG
i otoGar3.GL873550                N 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I
e cerAty1.NW_012002535v1            212627 3250 -    863181 M

a score=768277.000000
s hg38.chr6_GL000254v2_alt         1299532 155 +   4827813 AGGTGAGGTAAAGGAACAGAGACAAAGAATTCTAAAGCAATGGAATTCTCAGACTTAAACACAGGG---------TTTTATAGATTTTTAATCCATTTATCCTCAGAGCCTGGCACAGTGTTACTTGCACCTTGATCTTTAATACATTCTGTGGGGCTGTCTAA
s panTro5.chr6                    30170414 155 + 175400573 AGGTGAGGTAAAGGAACAGAGACAAAGAATTCTAAAGCAATAGAATTCTCGGACTTAAACACATGG---------TTTTATAGATTTTTAATCCATTTATCCTCAGAGCCTGGCACAGTGTTATTTGCACCTTGGTCTTTAATACATTCTGTGGGGCTGTCTAA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30401044 155 + 173848474 AGGTGAGGTAAAGGAACAGAGACAAAGAATTCTAAAGCAATAGAATTCTCGGACTTAAACACATGG---------TTTTATAGATTTTTAATCCATTTATCCTCAGAGCCTGGCACAGTGTTATTTGCACCTTGGTCTTTAATACATTCTGTGGGGCTGTCTAA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             55179 155 +   2037526 AGGTGAGATAAAGAAACAGAGACAAAGAATTCTAAAGCAATGGAATTCTCAGACTTAAACACAGGG---------CTTTATAGATTTTTAATCCATTTATCCTCAGAGCCTGGCACAGTGTTACTTGCACCTTGGTCTTTAATACATTCTGTGGGGCTGTCTAA
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74735836 155 + 122973662 AGGTAAGGTAAAGGAACAGAGAGAAAGAATTCTAAAGCAATAGAATTCTCAGACTTAAACACAGTG---------TTTTATAGATTTGTAATCCATTTATCCTCAGAGCTTGGCACAGTGTTACTTGCACCTTGGTCTTTAATACATTCTGTGGGGCAGTCTAA
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30558489 155 + 172585720 AGGTGAAGTAAAGGAACAGAGTGAAAGAATTCTAAAGCAATAGAATTCTCAGACTTAAACATAGTG---------TTTTATGGGTTTTTAATCCATTTATCTGCAGAGCCTGGCACAGTGTTACTTGCACCTTGGTCTTTAATACATTCTGTGGGACTGTCTAA
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      181779 155 +    231697 AGGTGAAGTAAAGGAACAGAGTGAAAGAATTCTAAAGCAATAGAATTCTCAGACTTAAACATAGTG---------TTTTATGGGTTTTTAATCCATTTATCTGCAGAGCCTGGCACAGTGTTACTTGCACCTTGGTCTTTAATACATTCTGTGGGACTGTCTAA
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1            103685 155 +   1495729 AGGTGAGGTAAAGGAACAGAGAGAAAGAATTCGAAAGCGATGGAATTCTCAGACTTAAACACAGTG---------TTTTATAGATTTTTAACGTATTTACCCAGAGAGCCTGGCACAGTGTTACTTACAGCTTGGTCTTTAATACATTCTATGCAGCTGTCTAA
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            215880 155 -    863181 AGGTGAAGTAAAGGAACAGAGAGAAAGAATTCTAAAGCAATAGAATTCTCAGACTTAAACATAGTG---------TTTTATGGGTTTTTAATCCATTTATCTGCAGAGCCTGGCACAGTGTTACTTGCACCTTGGTCTTTAATACATTCTGTGGGACTGTCTAA
i cerAty1.NW_012002535v1          M 3250 C 0
s chlSab2.chr17_KE148042v1_random    67437 155 -    117593 AGGTGAAGTAAAGGAACAGAGAGAAAGAATTCTAACGCAATAGAATTCTCAGACTTAAACATAGTG---------TTTTATGGGTTTTTAATCCATTTATCTGCAGAACCTGGCACAGTGTTACTTGCACCTTGGTCTTTAACACATTCTGTGGGGCTGTCTAA
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             16710 164 -    735854 AGGTGAGGTAAAGGAACAGAGAGAAAGAATTCTAAAGCAATAGAATTCTCAGACTTAAACACAGTGTTTTATAGATTTTATAGATTTTTAATCCATTTATCTGCAGAGCCTGGTACAGTGTTACTTGCACCTTGGTCTTTAATACATTCTGTGGGGCTGTCTAA
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17401593 143 -  18854210 AGGTGAGGAACCAGAGCAGAGGGAAAGAGTCGTAAAGCAACTGAATGCCCACATTTAAATACAGTG---------TTTTATAGATATTTAAT----------ACAGAGTTTAGAAGGGTGCTCTTTGC-TTTGGGTAATTAATACATT-TGTGGGGCTGCCTAA
i otoGar3.GL873550                C 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             44423 4356 -   1829203 I

a score=641339.000000
s hg38.chr6_GL000254v2_alt         1299687 102 +   4827813 TAACTAATTGCCTCCTTATGATAAACAGGTTAGAAAAGAAGACCAAGTGTCCCA-ATAAAATATGCACATAGCTTAGATGTGAATAATTCCTAAATATAGGCA
s panTro5.chr6                    30170569 102 + 175400573 TAACTAATTGCCTCCTTATGATAAACAGGTTAGAAAAGAATACCAAGTGTCCCA-ATAAAATATGCACATAGCTTAGATGTGAATAATTCCTAAATATAGGCA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30401199 102 + 173848474 TAACTAATTGCCTCCTTATGATAAACAGGTTAGAAAAGAATACCAAGTGTCCCA-ATAAAATATGCACATAGCTTAGATGTGAATAATTCCTAAATATAGGCA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             55334 102 +   2037526 TAACTAATTGCCTCCTTATGATGAACAGGTTAGAAAAGAATACCAAGTGTCCCA-ATAAAATATGCACATAGCTTAGATGTGAATAATTCCTAAATATAGGCA
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74735991 102 + 122973662 TAACTAATTGCCTCCTTACGATAAACAGGTTAGAAAAGAATACCAAGTGTCCCA-ATAAAATATGCACATAGCTTAGATGTGAATAATTCATAAATATAGGCA
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30558644 102 + 172585720 AAACTAATTGCCTCCTTATGATAAACAGGTTAGAAAAGAATACCAAATGTCCCA-ATAAAATATGCACATAGCTTAGATGTGAATAATTCATAAATATAGGCA
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      181934 102 +    231697 AAACTAATTGCCTCCTTATGATAAACAGGTTAGAAAAGAATACCAAATGTCCCA-ATAAAATATGCACATAGCTTAGATGTGAATAATTCATAAATATAGGCA
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1            103840 102 +   1495729 AAACTAATTGCCTCCCTAAGTTAAATAGGTTAAAAAAGAATACTAAGTGTCCCA-ATAAAATATGCACATAGCTTAGATGTGAATAATTCATAAAAATAGGCA
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            216035 102 -    863181 AAACTAATTGCCTCCTTATGATAAACAGGTTAGAAAAGAATACCAAGTGTCCCA-ATAAAATATGCATATAACTTAGATGTGAATAATTCATAAATATAGGCA
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    67592 102 -    117593 AAACTAATTGCCTCCTTATGATAAACAGGTTAGAAAAGAATACCAAGTGTCCCA-ATAAAATATGCACATAGCTTAGATGTGAATAATTCATAAATATAGGCA
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             16874 102 -    735854 AAACTAATTGCCTCCTTATGATAAGCAGGTTAGAAAAGAATACCAAGTGTCCCA-ATAAAATATGCACATAGCTTAGATGTGAATAATTCATAAACATAGGCC
i manLeu1.NW_012107142v1          C 0 C 0
s colAng1.NW_012115577v1             48779 102 -   1829203 TAACTAATTGCCTCCCTAAGTTAAACAGGTTAAAAAAGAATACCAAGTGTCCCA-ATAAAATATGCACATAGCTTAGATGTGAATAATTCATACAAATAGGCA
i colAng1.NW_012115577v1          I 4356 C 0
s otoGar3.GL873550                17401736 101 -  18854210 GAGCTAATTGCCTCCTAGGGTGAATTACATTAAAAA--AATACCAAGTGTCCCCTCCAAAATATGCACACAGCTCAGATGTGAATAATTCATAAAAGTAGGCA
i otoGar3.GL873550                C 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I

a score=1647030.000000
s hg38.chr6_GL000254v2_alt         1299789 341 +   4827813 GGTGCATGAGATGGCCATTGCggctcatgcctgtaataccagcattttgggaggctgaggcaggaggatcacttgagctcaggagttcaagactagccagagcaacatagggagacctcatttctacaaattttt-tttt-agaaaaattagccaggagtggtggtacaagcctgtggtgccagatac-ttgg-aggctgaaggaggagcattgatcgcatgagcccaggaggtcgaggcttcagtgagtcatgaacgtgccacagcactccagctagggcaacagagtgatactcggtctaaaaa------------taactaactaactaa--------a----taaataaataataaataaaGGCG
s panTro5.chr6                    30170671 350 + 175400573 GGTGCATGAGATGGCCATTgtggctcatgcctgtaataccagcattttgggaggctgaggcaggaggatcacttgagctcaggagttcaagactagccagagcaacatagggagacctcatttctacaaattttt-tttttagaaaaattagccaggagtggtggtacaagcctgtggtgccagatac-ttgg-aggctgaaggaggagcattgatcgcatgagcccaggagttcgaggcttcagtgagtcatgagcgtgccacagcactccagctagggcaacagagtgatactcgctttaaaaa------------taactaactaactaactaaataaa----taaataaataataaataaaGACG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30401301 350 + 173848474 GGTGCATGAGATGGCCATTgtggctcatgcctgtaataccagcattttgggaggctgaggcaggaggatcacttgagctcaggagttcaagactagccagagcaacatagggagacctcatttctacaaattttt-tttttagaaaaattagccaggagtggtggtacaagcctgtggtgccagatac-ttgg-aggctgaaggaggagcattgatcgcatgagcccaggagttcgaggcttcagtgagtcatgagcgtgccacagcactccagctagggcaacagagtgatactcgctttaaaaa------------taactaactaactaactaaataaa----taaataaataataaataaaGACG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             55436 345 +   2037526 GGTGCATGAGATGGCCATTgtggctcatgcctgtaataccagcattttgggaggctgaggcaggaggatcacttgagctcaggagttcaagactagccagagcaacatagggagccctcatttccacaatttttt-tttt-agaaaaattagccaggagtggtggtacaagcctgtggtgccagatac-ttgg-aggctgaaggaggagcattgatcgcatgagcccaggaggtcgaagcttcagtgagtcatgaatgtgccacagcactccagctagggcaacagagtgatactcggtctaaaaa------------taattaactaactaactaa----a----taaataaataataaataaaGGCG
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74736093 341 + 122973662 GGTGCATGAGATGGCCATTgtggctcatgcctgtaataccagcattttgggaggctgaggcaggaggatcacttgagctcaggagttcaagactagccagagcaacatggggagacctcatttctacaaatattt-tttt-agaaaaattagccaggagtggtggtacaagcctgtggtgccagttac-ttgg-aggctgaaggaggagcattgatctcatgagcccaggaggtcgaggcttcggtgagtcatgagcgtgccactgcactccagccagggcagcagagtgatactctgtctaaaaa------------taactaactaactaa--------a----taaataaataaaaaataaaGGCG
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30558746 342 + 172585720 GGTGCATGGGATGGCCACTgtggctcatgcctgtaataccagcattttgggaggctgaggtgggaggatcacttgagctcaggacttcaagactagccagagcaacatagagagacctgatttccacaaatattt-tttt-agaaatattagccagggttggtggcacaagcctgtggtggcagctac-ttggtaggctgaaataggagcattgattgtgtgagcccaggaggttgaggcttcagtgagtcatgagcgtggcactgcacttcagccagggcaacagagtgatactcagtctAAaaa------------taactaactaaataa--------a----taataaataaataaataaaGGCG
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      182036 341 +    231697 GGTGCATGGGATggccactgtggctcatgcctgtaataccagcattttgggaggctgaggtgggaggatcacttgagctcaggacttcaagactagccagagcaacatagagagacctgatttccacaa--atttttttt-agaaatattagccagggttggtggcacaagcctgtggtggcagctac-ttggtaggctgaaataggagcattgattgtgtgagcccaggaggttgaggcttcagtgagtcatgagcgtggcactgcacttcagccagggcaacagagtgatactcggtctAAaaa------------taactaaataaataa--------a----taaataataaataaataaaGGCG
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1            103942 329 +   1495729 GGTGCATGggtcggccacggtggctcatgcctgtaattccagcattgtggcaggct-------gaggattgcttgagcccaggagttcaagaccagccatagcaacatagggagacctcatccctacaaatatttctctt-agaaaaattagccaggagtggtggcacaagcctgtggtgccagctac-ttgggaggctgagggaggagcattggtagcatgatcccagggggtcaagtcttcagtgagtcatgagtgtgccactgtactccagccagggtgacagagtgacaccctgcctagaaa------------taaataaataaaca-------------------aacaaacaaaCAAAGGCA
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            216137 354 -    863181 GGTGCATGGGATGGCCATTGTCActcatgcctgtaataccaacattttgggaggctgaggcgggaggatcacttgagctcaagacttcaagactagccagagcaacatatggagacctcatttccacaaatattt-tttt-agaaatattagccagggttggtggcacaagcctgtggtggcagctac-ttggtaggctgaaacaggagcattgatcatgtgagcccaggaggtcgaggcttcagtgagtcatgagcatggcactgcactcccgccagggcaacagagtgatacttggtctaaaaataactaactaactaactaactaaataa--------a----taattaattaataaataaAGGCG
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    67694 347 -    117593 GGTGCATGGGATGGCCATTgtggctcatgcctgcaataccagcattttgggaggctgaggcgggaggatcacttgagctcaggacttcaagactagccagagcaacatagggaggcctgatttctacaaatattt-tttt-agaaatattagccagggttggtggcacaagcctgtggtggcagctacattggtaggctgaaataggagcattgatggtgtgagcccaggaggtcgaggcttcagtgagtcataagcgtggcactgcactccagccagggcaacacagtgatactcggtctaaaaa------------taactaactaactaa--------ataaataaataataaataaataaaGGTG
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             16976 338 -    735854 GGTGCATGGGTCAGCCATTgtggctcatgcctgtaataccagcattttggaaggctgaggcgggaggatcacttgagctcaggacttcaagactagccagagcaacatagggagacctcatttctacacatattt-ttta-agaaatattagccagggttggtggcacaagcctgtggtggcagctac-ttggtaggctgaaggaggagcattgatcgtgtgagcccaggaggtcgaggcttcagtgagtcatgagcatggcactgcactccagccagggcaacagagtgatactcggtctaaaaC------------TAACTAACTAAC----------------TAACTAGTAAATACATAAAGGCG
i manLeu1.NW_012107142v1          C 0 C 0
s colAng1.NW_012115577v1             48881 323 -   1829203 GGTGCATGGATcggccactgtggctcatgcctgtaataacagcattgtgggaggct-------gaggatagcttgagcccagaagtttaagaccaatcatagcaacatagggagacctcatccccgcaaatattt-tttt-agaaaaattagccaggagtggtggcacaagcctgtggtgccagttac-ttgggaggctgagcgaggagcattggtcgcatgatcccagggggtcgaggcttcagtgagacatgagtgcaccactgcactccagccagggtaacagagtgacaccctgcctaaaaa------------taactaaataaaTA------------------------ATAAATAAAGGCG
i colAng1.NW_012115577v1          C 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e otoGar3.GL873550                17401837   0 -  18854210 C
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I

a score=673359.000000
s hg38.chr6_GL000254v2_alt         1300130 117 +   4827813 GTGCATGAGCACTGGTGACGGGCACTTTGGCTGCATTGAGCAC-TTGCAAATTTGAGGTGATT---AAATTCTGTACAGGCTCCTGGTTGCAATATACGGTAACACATTGTG---CTTTGTATT
s panTro5.chr6                    30171021 117 + 175400573 GTGCATGAGCACTGGTGAAGGGCACTTTGGCTGCATTGAGCAC-TTGCAAATTTGAGGTGATT---AAATTCTGTACAGGCTCCTGGTTGCAATACACGGTAACACATTGTG---CTTTGTATT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30401651 117 + 173848474 GTGCATGAGCACTGGTGAAGGGCACTTTGGCTGCATTGAGCAC-TTGCAAATTTGAGGTGATT---AAATTCTGTACAGGCTCCTGGTTGCAATACACGGTAACACATTGTG---CTTTGTATT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             55781 117 +   2037526 GTGCACGAGCACTGGTGAAGGGCACTTTGGCTGCATTGAGCAC-TTGCAAATTTGAGGTGATT---AAATTCTGTACAGGCTCCTGGTTGCAATATACGGTAACACACTGTG---CTTTGTATT
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74736434 117 + 122973662 GTGCGTGAGCACTGGTGAGGGGCACTTTGGCTGCATGGAGCAC-TTGCAGATTTGAGGTGATT---AAATTCTGTCCAGGCTCCTGGCTGCAATATACAGTAACACATTGTG---CTTTGTCTT
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30559088 117 + 172585720 TTGCATGAGCACTGGTGAAGGGCACTTTGGCTGCATTGAGCAC-TTGCAATTTTGAGGTGATC---AAATTCTGTCCAGGCTCCTGGTTGCAACATACGGTAACATATCGTG---CTTTGTGTT
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      182377 117 +    231697 TTGCATGAGCACTGGTGAAGGGCGCTTTGGCTGCATTGAGCAC-TTGCAATTTTGAGGTGATC---AAATTCTGTCCAGGCTCCTGGTTGCAACATACGGTAACATATCGTG---CTTTGTGTT
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1            104271 114 +   1495729 GTTCATGAGCACTGGTGAAGGGCACTTTGGCTGCATTGGGCAC-TTGCAATTCTGAGGTGATT---AAATTCTGTCCAGGCTCCTGATTGCAATATACGGTAACA---CGTC---CTTTGTATT
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            216491 117 -    863181 TTGCATGAGCACTGGTGAAGGGCACTTTGGCTGCACTGAGCAC-TTGCAATTTTGAGGCGATG---ACATTCTGTCCAGGCTCCTGGTTGCAACACACGGTAACACATCGTG---CTTTGTGTT
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    68041 117 -    117593 TCGCATGAGCACCAGTGAAGGGCACTTTGGCTGCATTGAGCAC-TTGCAATTTTGAGATGATG---ACATTCTGTCCAGGCTCCTGGTTGCAACACACGGTAACACATCGTG---CTTTGTGTT
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             17314 117 -    735854 GTGTATGAGCACTGGTGAAGGGCACTTTGGCTGCATTGAGCAC-TTGGAATTTTGAGGTGATT---AAATTCTGTCCAGGCTCCTGGTTGCAATACACGGTAACACATCGTG---CTTTGTGTT
i manLeu1.NW_012107142v1          C 0 C 0
s colAng1.NW_012115577v1             49204 117 -   1829203 ATGCATGAGCACTGGTGAAGGGCACTTTGGGTGCACTGAGCAC-TTGCAATTTTGAGGTGATT---AAATTCTGTCCAGGCTCCTGGTTGCAACATACGGTAACACATTGTG---CTTTGTGTT
i colAng1.NW_012115577v1          C 0 C 0
s otoGar3.GL873550                17401837 116 -  18854210 TTGCATGAACACTGCAGAAGAAAATTTTG-----ACTAAGCACAGTGCAGCTTTGAAGTGATTGTAAAGTCCTAC---AACTCCTGGTTGAAATACACAGTAACAAATTATGCTTCTTTGTATG
i otoGar3.GL873550                C 0 N 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I

a score=1352939.000000
s hg38.chr6_GL000254v2_alt         1300247 230 +   4827813 GAGATGTCCTGGACTCGCGCACACAAACTCAGGGCTATAAGATAAAGATAATT-TAAAAATACAACAGACCAGAGTCACAGATACACAGTCTGGGAAAGTAAAACTT---AACTTTGTGAGTCTAACTGCAATGCGTTTAGACACATTT----ATATATAATGGGGCCAAAAATCACCTCTTTTACAAATTAGATTCGTGACCATTCAGGGGCTACCAAGATTGTGCTAGGCACTGTA
s panTro5.chr6                    30171138 230 + 175400573 GAGATGTCCTGGACTCGCGCACACAAACTCAGGGCTATAAGATACAGATAATT-TAAAAATACAACAGACCAGAGTCACAGATATACAGTCTGGGAAAGTAAAACTT---AACTTTGTGAGTCTAACTGCAATGCGTTTAGACACATTT----ATATATAATGGGGCCAAAAATCACCTCTTTTACAAATTAGATTGGTGATCATTCAGGGGTTACCAAGATTGTGCTACCCACTGTA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30401768 230 + 173848474 GAGATGTCCTGGACTCGCGCACACAAACTCAGGGCTATAAGATACAGATAATT-TAAAAATACAACAGACCAGAGTCACAGATATACAGTCTGGGAAAGTAAAACTT---AACTTTGTGAGTCTAACTGCAATGCGTTTAGACACATTT----ATATATAATGGGGCCAAAAATCACCTCTTTTACAAATTAGATTGGTGATCATTCAGGGGTTACCAAGATTGTGCTACCCACTGTA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             55898 230 +   2037526 GAGATGTCCTGGACTCGCGCACACAAACTCAGGGCTATAAGATAAAGATAATT-TAAAAATACAACAGACCAGAGTCACAGATACACAGTCTGGGAAAGTAAAACTT---AACTTTGTGAGTCTAACTGCAATGCGTTTAGACACATTT----ATATATAATGGGGCCAAAAATCACCTCTTTTACAAATTAGATTCGTGATCATTCAGGGGTTACCAAGATTGTGCTACCCACTGTA
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74736551 230 + 122973662 GAGATGTCCTGGACTCACGCACACAAACTCAGGGCTATAAGATAAAGATAATT-TTAAAATACAACAGACCAGAGTCACAGATACACAGTCTGGGAAAGTAAAACTT---AACTTTGTGAGTCTAACTGCAATGCGTTTAGAAACATTT----ATATATAATGGGACCAAAAATCACCTCTTTTACAAATTAGATTCGTGATCATTCAGGGGTTACCAAGATTGCGCTACCCACTGTA
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30559205 230 + 172585720 GACATGTCCTGGACTCGCACACACAAACTCAGGGCTATGAAATAAAGATAATA-TAAAAATACAACAGACCAGAGTCACAGATACACAATCTGGGAAAGTAAAACTT---AACTTTGTGAGTCTAATTGCAATGTGTTTAGACACATTT----ATATATGATGGGGCCAAAGATCACCTCTTTTACAAATTAGATTCATGATCATTCAGTAGTTATCAAGATTGTACTACCCGCTGTA
i rheMac8.chr4                    C 0 I 19
s macFas5.chr4_KE145577_random      182494 230 +    231697 GACATGTCCTGGACTCGCACACACAAACTCAGGGCTATGAAATAAAGATAATA-TAAAAATACAACAGACCAGAGTCACAGATATACAATCTGGGAAAGTAAAACTT---AACTTTGTGAGTCTAATTGCAATGTGTTTAGACACATTT----ATATATGATGGGGCCAAAGATCACCTCTTTTACAAATTAGATTCATGATCATTCAGTAGTTATCAAGATTGTACTACCCGCTGTA
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1            104385 230 +   1495729 GAGATGTCCTGGACTCACACACACAAACTCAAGACTATGAAATAAAGATAATT-TAAAAATACAGCACACCAGAGTCACAGATACATAGTCTGGGAGAGTAAAACTT---AGCTTTGTGAGTCTAATTGCAATGCATATAGACACATTT----ATATGTAAAGGGCCCCCAAATCACCTCTTTTACAAATTAGATTCGTGATCATTCAGGGGTTACCAAGATTGTGCTACCCACAGTA
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            216608 230 -    863181 GAGATGTCCTGGACTCACACACACAAACTCAAGGCTATGAAATAAAGATAATT-TAAAAATACAACAAACCAGAGTCACAGATACACAATCTGGGAAAATAAAACTT---AACTTTGTGAGTCTAATTGCAATGCGTTTAGACACATTT----ATATATGATGGGGCCAAAGATCACCTCTTTTACAAATTAGATTCGTGATCATTCAGTAGTTACCAAGATTGTGCTACCCGCTGTA
i cerAty1.NW_012002535v1          C 0 I 30
s chlSab2.chr17_KE148042v1_random    68158 231 -    117593 GAGATGTCCTGGACTTGCACACACAAACTCAGGGCTATGAAATAAAGATAATTAAAAAAATACAACAGACCAGAGTCACAGATACACAATCTGGGAAAGTAAAACTT---AACTTTGTGAGTCTAACTGCAATGCGTTTAGACACATTT----ACATATGATGGGGCCAAAGATCATCTCTTTTACAAATTAGATTCATGATCATTCAGTAGTTACCAAGATTGTGCTACCCGCTGTA
i chlSab2.chr17_KE148042v1_random C 0 I 23
s manLeu1.NW_012107142v1             17431 230 -    735854 GAGATGTCCTGGACTTGCACACACAAACTCAGGGTTATGAAATAAAGATAATT-TAAAAATACAACAGACCAGAGTCACAGATAGACAATCTGGGAAAGTAAAACTT---AACTTTGTGAGTCTAATTGCAATGCATTTAGATACATTT----ATATATAATGGGGCCAAAAATCACCTCTTTTACAAATTAGATTCGTGATCATTCAGTAGTTACCAAGATTGTGCGCTCCGCTGTA
i manLeu1.NW_012107142v1          C 0 I 19
s colAng1.NW_012115577v1             49321 225 -   1829203 GCAATGTCCTGGACTTGCACACACAAACTCAGGGCTATGAAATAAAGATAATG-TAATAATACAAGAGACCAGAGTCACAGATTCATAGTCTGGAGAAGTAAAA--------CTTTGTGAGTCTAATTGCAATGCGTTTAGACACATTT----TTATGTAAAGGGCTCAAAAATCACCTCTTTTACAAATTAGATTCGTGATCACTCAGGGTTTACCAATATTGGGCTACACACTGTA
i colAng1.NW_012115577v1          C 0 I 25
s otoGar3.GL873550                17300896 232 -  18854210 GAGATGTCCCACACTCACGAGTACAGACTAAGGGATATGGAATAAAGATCATT-TTAAACTACAAC---TCAGAGTCCAAGATACATAGTGAGGGAAAGTAAAACTCGGGAGCTTCA-GAGGCTAACTGCAATGCATTCAGACACATTCCTTGCTCTGTCAAGGGGCC-AACATCACTTCTGTTACAGATTAGATTCCTGATCATTCGGGGGTTACTTAGATTGTGCTACCTACTCTA
i otoGar3.GL873550                N 0 I 2717
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I

a score=2425.000000
s hg38.chr6_GL000254v2_alt         1300477 7 +   4827813 CTGCGCT--
s panTro5.chr6                    30171368 7 + 175400573 CTGCGCT--
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30401998 7 + 173848474 CTGCGCT--
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             56128 7 +   2037526 CTGTGCT--
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74736781 7 + 122973662 CTGTGCT--
i nomLeu3.chr1a                   C 0 C 0
s macFas5.chr4_KE145577_random      182724 7 +    231697 --GCACAAT
i macFas5.chr4_KE145577_random    C 0 I 5
s macNem1.NW_012012100v1            104615 7 +   1495729 --GCACAAT
i macNem1.NW_012012100v1          C 0 I 17
e mm10.chr17                      58000375 5960 -  94987271 I
e otoGar3.GL873550                17301128 2717 -  18854210 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             49546 25 -   1829203 I
e manLeu1.NW_012107142v1             17661 19 -    735854 I
e chlSab2.chr17_KE148042v1_random    68389 23 -    117593 I
e cerAty1.NW_012002535v1            216838 30 -    863181 I
e rheMac8.chr4                    30559435 19 + 172585720 I

a score=18593.000000
s hg38.chr6_GL000254v2_alt         1300484 22 +   4827813 ACCCACTGTTACTAAGATTGTG
s panTro5.chr6                    30171375 22 + 175400573 ACCCACTGTTACTAAGATTGTG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30402005 22 + 173848474 ACCCACTGTTACTAAGATTGTG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             56135 22 +   2037526 ACCCACTGTTACTAAGATTGTG
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74736788 22 + 122973662 ACACACTGTTACTAAGATTGTG
i nomLeu3.chr1a                   C 0 C 0
s macFas5.chr4_KE145577_random      182736 15 +    231697 ACGCAC-----CCGAGGCTG--
i macFas5.chr4_KE145577_random    I 5 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e otoGar3.GL873550                17301128 2717 -  18854210 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             49546 25 -   1829203 I
e manLeu1.NW_012107142v1             17661 19 -    735854 I
e chlSab2.chr17_KE148042v1_random    68389 23 -    117593 I
e cerAty1.NW_012002535v1            216838 30 -    863181 I
e macNem1.NW_012012100v1            104622 17 +   1495729 I
e rheMac8.chr4                    30559435 19 + 172585720 I

a score=5701.000000
s hg38.chr6_GL000254v2_alt         1300506 6 +   4827813 CTACTC
s panTro5.chr6                    30171397 6 + 175400573 CTACTC
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30402027 6 + 173848474 CTACTC
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             56157 6 +   2037526 CTACTC
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74736810 6 + 122973662 CTACTC
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30559454 6 + 172585720 CGAGGC
i rheMac8.chr4                    I 19 I 1
s manLeu1.NW_012107142v1             17680 6 -    735854 CGAGGC
i manLeu1.NW_012107142v1          I 19 I 1
e mm10.chr17                      58000375 5960 -  94987271 I
e otoGar3.GL873550                17301128 2717 -  18854210 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             49546 25 -   1829203 I
e chlSab2.chr17_KE148042v1_random    68389 23 -    117593 I
e cerAty1.NW_012002535v1            216838 30 -    863181 I
e macNem1.NW_012012100v1            104622 17 +   1495729 I
e macFas5.chr4_KE145577_random      182751 0 +    231697 C

a score=1000.000000
s hg38.chr6_GL000254v2_alt         1300512 1 +   4827813 C
s panTro5.chr6                    30171403 1 + 175400573 C
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30402033 1 + 173848474 C
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             56163 1 +   2037526 C
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74736816 1 + 122973662 C
i nomLeu3.chr1a                   C 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e otoGar3.GL873550                17301128 2717 -  18854210 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             49546 25 -   1829203 I
e manLeu1.NW_012107142v1             17686 1 -    735854 I
e chlSab2.chr17_KE148042v1_random    68389 23 -    117593 I
e cerAty1.NW_012002535v1            216838 30 -    863181 I
e macNem1.NW_012012100v1            104622 17 +   1495729 I
e macFas5.chr4_KE145577_random      182751 0 +    231697 C
e rheMac8.chr4                    30559460 1 + 172585720 I

a score=4500.000000
s hg38.chr6_GL000254v2_alt         1300513 1 +   4827813 G
s panTro5.chr6                    30171404 1 + 175400573 G
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30402034 1 + 173848474 G
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             56164 1 +   2037526 G
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74736817 1 + 122973662 G
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30559461 1 + 172585720 G
i rheMac8.chr4                    I 1 C 0
s macNem1.NW_012012100v1            104639 1 +   1495729 G
i macNem1.NW_012012100v1          I 17 C 0
s chlSab2.chr17_KE148042v1_random    68412 1 -    117593 G
i chlSab2.chr17_KE148042v1_random I 23 C 0
s manLeu1.NW_012107142v1             17687 1 -    735854 G
i manLeu1.NW_012107142v1          I 1 C 0
s otoGar3.GL873550                17303845 1 -  18854210 G
i otoGar3.GL873550                I 2717 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             49546 25 -   1829203 I
e cerAty1.NW_012002535v1            216838 30 -    863181 I
e macFas5.chr4_KE145577_random      182751 0 +    231697 C

a score=12606.000000
s hg38.chr6_GL000254v2_alt         1300514 2 +   4827813 CT
s panTro5.chr6                    30171405 2 + 175400573 CT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30402035 2 + 173848474 CT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             56165 2 +   2037526 CT
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74736818 2 + 122973662 CT
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30559462 2 + 172585720 CT
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      182751 2 +    231697 CT
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1            104640 2 +   1495729 CT
i macNem1.NW_012012100v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    68413 2 -    117593 CT
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             17688 2 -    735854 CT
i manLeu1.NW_012107142v1          C 0 C 0
s colAng1.NW_012115577v1             49571 2 -   1829203 CT
i colAng1.NW_012115577v1          I 25 C 0
s otoGar3.GL873550                17303846 2 -  18854210 CT
i otoGar3.GL873550                C 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e cerAty1.NW_012002535v1            216838 30 -    863181 I

a score=634941.000000
s hg38.chr6_GL000254v2_alt         1300516 123 +   4827813 GCGGGACCAGCGGAAATCCTCCACCCAATAAAAGCCC-CAGGCGCCTAT-ACCGGATTCCATTTTCAGTTCAGGCCCAAATCCCTGGGGGGTTG----------------------GTGGAGGCTGAGGCGGGGCTCAGCGGCCTGG
s panTro5.chr6                    30171407 122 + 175400573 GCGGGACCAGCGGAGATCCTCCACCCAATAAAAGCCC-CAGGCGCCTAT-ACCGGATTCCATTTTCAGGTCAGGCCCAAATTCCCGGGGA-TTG----------------------GTCGAGGCTGAGGCGGGGCTCAGCGGCCTGG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30402037 122 + 173848474 GCGGGACCAGCGGAGATCCTCCACCCAATAAAAGCCC-CAGGCGCCTAT-ACCGGATTCCATTTTCAGGTCAGGCCCAAATTCCCGGGGA-TTG----------------------GTCGAGGCTGAGGCGGGGCTCAGCGGCCTGG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             56167 144 +   2037526 GCGGGACCAGCGGAGATCCTCCACCCAATAAAAGCCC-CAGGTGCCTAT-ACCGGATTCCATTTTCAGTTCAGGCCCAAATCCCCGGGGG-TTGGTCGAGGCTGAGGCGGGGCTCCGTCGAGGCTGAGGCGGGGCTCAGCGGCCTGG
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74736820 120 + 122973662 GTGGGACCAGCGGAGATCCTCCACCCGATAAAAGCCC-CAGGTGCCTAT-ACC--ATTCCATTTTCTGTTCAGGCCCAAATCCCAGGGGG-TTG----------------------GTCGAGGCTGAGGCGGGGCTCAGCGGCCTGG
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30559464 122 + 172585720 GCGAGACCAGCGGAGGTCCTCGACCCCACAAGAGCCC-CAGGCGCCTAT-ACCGGATTCCATTTTCAGTTCAGGCCCAAATCCCCGGAGG-TTG----------------------GTCTAGGCGGAGGCGGGGCTCAGTGGCCTGG
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      182753 122 +    231697 GCGAGACCAGTGGAGATCCTCGACCCCACAAGAGCCC-CAGGCGCCTAT-ACCGGATTCCATTTTCAGTTCAGGCCCAAATCCCCGGGGA-TTG----------------------GTGGAGGCGGAGGCGGGGCTCAGTGGCCTGG
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1            104642 121 +   1495729 GCG-GACCCGAGGAGACCCTTGACCGGACAAGAGCCC-CAGGCGCCTAC-ACCAGATTCCATTTTCAGTTCAGGCCCAAATCCCCAGGGA-TTA----------------------GTTGGCTTAGAGGAGGGGCTCAGCGGCCTGG
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            216868 122 -    863181 GCGAGACCAGCAGAGGTCCTCGACCCCACAAGAGCCC-CAGGCGCCTAT-ACCAGATTCCATTTTCAGTTCAGGCCCAAATCCCCAGGGG-TTG----------------------GTCGAGGCGGAGGCGGGGCTCAGTGGCCTGG
i cerAty1.NW_012002535v1          I 30 C 0
s chlSab2.chr17_KE148042v1_random    68415 121 -    117593 GCGAGACCAG-GGAGGTCCTCGACCCCACAAGAGCCC-CAGGCGCCTAT-ACCAGATTCCATTTTCAGTTCAGGCCCAAATCCCCGGGGG-TTG----------------------GTCGAGGCGGAGGCGGGGCTCAGTGGCCTGG
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             17690 122 -    735854 GCGAGACCAGCGGAGGTCCTCGACCCCACAAGAGCCC-CAGGCGCCTAT-ACCGGATTCCATTTTCAGTTCAGGCCCAAATCTCCGGGGG-TTG----------------------GTCGAGGCGGAGGCGGGGCTCAGTGGCCTGG
i manLeu1.NW_012107142v1          C 0 C 0
s colAng1.NW_012115577v1             49573 118 -   1829203 GCGGGACCCGCGGAGACCCTCAACCTGATAAGAACCC-CAGGCGTCTATCACCCGATTCTATTTTCACTTAAGGTCCAAATCCCCGGGGG-TTG----------------------GTTGGGGTAGAGGCGGGGCTCAGTGG-----
i colAng1.NW_012115577v1          C 0 C 0
s otoGar3.GL873550                17303848 107 -  18854210 GCGGGACCC-CTGAGACCTTCAATCC---AAGGGCCCGCGGGGACTTTC-ACCTGGTTTCGTTTTCAGTTTAGGACAAAGTCCCCGCGGG-TTG----------------------GTCGGGGCGG-GGCGGGGCT-----------
i otoGar3.GL873550                C 0 C 0
e mm10.chr17                      58000375 5960 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I

a score=1713098.000000
s hg38.chr6_GL000254v2_alt         1300639 294 +   4827813 GCTGACCGCGGTCGCTGGGAATGGGTCTCACACCCTCCAGTGGGTACACAGCTGCGACGTGGACTCGGACTGCAGTCTCCTCAGTGGGTA--TGAACATAC--CCTATCACGGCGCCAGTTACCTCGTCCGAAAC--CAGGAACTGCGCTCTTGGACTGCAGCGGA---CAAGGCGGCTCAGATGCCCT-------------GGCG-----GAGGAA-------------------CAGGCAGAGCTGCT--------CAAAACCTACCTGCAGGGAAGGTG-GGCGGAGTGGCTCAGCAAAGTCCTTAAGAATGGGAAGGAGAGGCTGCAGTGCCCAGGTACCAGTGG
s panTro5.chr6                    30171529 294 + 175400573 GCTGACCGCGGTCGCTGGGAATGGGTCTCACACCCTCCAATGGGTACACAGCTGCGACGTGGACTCGGACTGCAGCCTCCTCAGTGGGTA--TGAACATAC--CCTTTGACGGCGCCAGTTACCTCGTCCTAAAC--CAGGAACTGCGCTCTCTGACTGCAGCGGA---CAAGGCGGCTCAGATGCCCT-------------GGCG-----GAGGAA-------------------CAGGCAGAGCTGCT--------CAAAACCTACCTGCAGGGAAGGTG-GGCGGAGTGGCTCAGCAAAGTCCTTAAGAATGGGAAGGAGAGGCTGCAGTGCCCAGGTACCAGTGG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30402159 294 + 173848474 GCTGACCGCGGTCGCTGGGAATGGGTCTCACACCCTCCAATGGGTACACAGCTGCGACGTGGACTCGGACTGCAGCCTCCTCAGTGGGTA--TGAACATAC--CCTTTGACGGCGCCAGTTACCTCGTCCTAAAC--CAGGAACTGCGCTCTCTGACTGCAGCGGA---CAAGGCAGCTCAGATGCCCT-------------GGCG-----GAGGAA-------------------CAGGCAGAGCTGCT--------CAAAACCTACCTGCAGGGAAGGTG-GGCGGAGTGGCTCAGCAAAGTCCTTAAGAATGGGAAGGAGAGGCTGCAGTGCCCAGGTACCAGTGG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             56311 294 +   2037526 GCTGACCGCGGTCGTTGGGAATTGGTCTCACACCCTCCAATGGGTACACAGCTGCGACGTGGACTCGTACTGCAGCCTCCTCAGTGGGTA--TGAACATAC--CCTATGACGGCGCCAGTTACCTCGTCCGAAAC--CAGGAACTGCGCTCTTGGACTGCAGCGGA---CAAGGCGACTCAGATGCCCT-------------GGCG-----GAGGAA-------------------CAGGCAGAGCTGCT--------CAAAACCTACATGCAGGGAAGGTG-GGCGGAGTGGCTCAGCAAAGTCCTTAAGAATGGGAAGGAGAGGCTGCAGTGCCCAGGTACTAGTGG
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74736940 293 + 122973662 GCTGACCACGGTCGCTGGGAATGGGTCTCACACCCTCCAATGGGTACACAGCTGCGACCTGGACTCGGACTGCAGCCTCCTCAGTGGGTA--TGAACATAC--CCTATGACGGCGCCAGTTACCTCGTCCTAAAC--CAGGAACTGCGCTCTTGGACTGCAGCGGA---CAAGGAGGCTCAGATG-CCT-------------GGCG-----GAGGAA-------------------CATGCAGAGCTGCT--------CAAAACCTACCTGCAGGGAAGGTG-GGCGGAGTGGCTCTGCAAAGTCCTTAAGAATGGGAAGGAGACGCTGCAGTGCCCAGGTACCAGCGC
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30559586 294 + 172585720 GCTGACCGCGGTCACTGGGAATGGGTCTCACACCCTCCATTGTATACACAGCTGCGACCTGGACCCGGACTGGAGCCTCCTCCGCGGGGA--TGAACACAC--CCTACGACTACGCCAGTTACCTCCTCATAAAC--CAGCAACTGCGCTCTTGGACAGCACCGGA---CAAGGCGGCTCAGATGCTCT-------------GGCG-----GAGAAA-------------------CACGCAGAGCTGCT--------CAAAACCTACCTGCAGGGAAGGTG-GGCGGAGCGGCTCAGCAAAGTCCTTAAGAATGGGAAGGAGACGCTGCAGTGCGCGGGCACCAGCGG
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      182875 294 +    231697 GCTGACCGCGGTCACTGGGAATGGGTCTCACACCCTCCATTGTATACACAGCTGCGACCTGGACCCGGACTGGAGCCTCCTCCGCGGGGA--TGAACACAC--CCTACGACTACGCCAGTTACCTCCTCATAAAC--CAGCAACTGCGCTCTTGGACAGCACCGGA---CAAGGCGGCTCAGATGCTCT-------------GGCG-----GAGAAA-------------------CACGCAGAGCTGCT--------CAAAACCTACCTGCAGGGAAGGTG-GGCGGAGCGGCTCAGCAAAGGCCTTAAGAATAGGAAGGAGACGCTGCAGTGCGCGGGTACCAGCGG
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1            104763 312 +   1495729 ACTGTCAGCGACCACGGGAAAAGGGTTTCACACCCTCCATTGTATACACAACTGCGACCTGGACCCGGACTGGAGCCTCTTGTGCGGGTA--TGAACATAA--CCTATGACGGCGCCAGTTACCTCGTCCTAAAC--CAGGAGATGCGCTCTTGGACCGCAGCGGA---CAAGGCGGCTCAGATATCCT-------------GGTG-----TATGAAATGACCATGCTCATTTGACCATGCAGAGCTGGT--------CAAAACCCACCTGCAGGGAAGGTG-GCCGGAGCGGCTCAGC-AAGGCCTTAAGAATGGGAAGGAGACACTGCAGTGCGCCGGTACCAGGGG
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            216990 293 -    863181 GCTGACCGCGGTCACTGGGAATGGGTCTCATACCCTCCATTGTATACACAGCTGCGACCTGGACCCGGACTGGAGCCTCCTCCGCGGGGG--TGAACACAC--CCTACGACTGCGCCAGTTACCTCCTCATAAAC--CAGCAACTGCGCTCTTGGACCGCAGCGGA----AAAGCGGCTCAGATGCCCT-------------GGCG-----GAGAAA-------------------CATGCAGAGCTGCT--------CAAAACCTACCCGCAGGGAAGGTG-GCCGGAGCGGCTCAGCAAAGGCCTTAAGAATGGGAAGGAGACGCTGCAGTGCGCGGGTACCAGCGG
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    68536 294 -    117593 GCTGACCGCGGTCACTGGGAATGGGTCTCACACCCTCCACTGTATACACAGTTGCGACCTGGACCCGGACTGGAGCCTCCTCCGCGGGGA--TGAAATTAA--CCTACGACTGCTCCAGTTACTTCCTCATAAAC--CAGGAACTGCGCTCTTGGACAGCACGGGA---CAAGGCGGCTCAGATGCTCT-------------GGCG-----GAGAAA-------------------CATGCAGAGCTGCT--------CAAAACCTACCTGCAGGGAAGGTG-GGCGGAATGACTCAGCAAAGGCCTTAAGAATGGGAAGGAGACACTGCAGTGCGCAAGTACCAGCGG
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             17812 294 -    735854 GCTGACCGCGGTCACTGGGAATGGGTCTCACACCCTCCATTGTATACACAGCTGCGACCTGGACCAGGACTGGAGCCTCCTCCGCGGGGA--TGAACACAC--CCTACGAAGGCGCCAGTTACCTCGTCATAAAC--CAGGAACTGTGCTCTTGGACAGCACGGGA---CAAGGCGGCTCAGATGCTCT-------------GGCG-----GAGAAA-------------------CACGCAGAGCTGCT--------CAAAACCTACCTGCAGGGAAGGTG-GGCAGAACGGCTCAGCAAAGGCCTTAAGAATGGGAAGGAGACGCTGCAGTGCGCGGGTACCAGCGG
i manLeu1.NW_012107142v1          C 0 C 0
s colAng1.NW_012115577v1             49691 288 -   1829203 -----CAGCAATCGCGGGGACAGGGTCTCACACCCTCCAATGGATACACAGCTGCGACCTGGACCCAGACTGGAGCCTCCCCCGCGGGGA--TGAACATAC--CCTAC-ATGGCGCCAGTTACCTCGTCCTAAAC--CAGGAACTGCGCTCTAGGAACGCAGCGGA---CAAGGCGGCTCAGATGCTCT-------------GGCG-----GAGGAA-------------------CACGCAGAGTCCCT--------CAAAACCTACCCGCAGGGAAGGTG-AGCGGAGTGACTCAGCAAAGGCCTTAAGAATGGGAAGGAGATGCTGCAGTGCGCAGGTACCAGCGG
i colAng1.NW_012115577v1          C 0 C 0
s otoGar3.GL873550                17303955 305 -  18854210 ---GACAGCGGGGGTGGGGCCAGGGTCTCACACCCTCCAGGGGATGTTTGGCTGCGACGTGGGGCCGGACCGGAGCCTCCTCCACGGGTACTTGCAGTCGG--CCTATGACGGCGCCGACTACCTGGTCCTGAAT--GAGGACCTGCGCTCCTGGACCGCGGCGGA---CATGGCGGCTCAGATCTCCCAGCGCAAGTGGGAGGCG-----GAGGGT-------------------GCGGCGGGGCGCTG--------GAGGGCCTACGTGCAAGCGGAGTG-CGTGGAGTCGCTCCTCAGATACCTGGAGAAGGGAAAGGACACGCTGCAGCGCGCGGGTACGTG-GG
i otoGar3.GL873550                C 0 C 0
s mm10.chr17                      58006335 315 -  94987271 GCTGACCACTTTGGCCTCAACAGAGTCTCACACTGTCCAGTGACTAATCGGCTGTGACATAGGGCCAGACCATCACCTCCTCCGTGGGTA--TAAGCACATCACTTATGAAGGCCAGGATTACATCTCTCTGACCGAGAGGACCTGCGCTCCTGGGTTGCAGTGGATACCGAGGAGTCTCAGATCACTA-------------GGTGCAAGCAAGAGG-------------------CATCTGGTTTTGTTATATCATGCACATCTTTCTTGGAGGGAAGGTGCGTTGAAGTGGCTTCTCAAATACCTGGATAAAGGGGAGGAGATGCTGCAGCATGCAGGTTTCAGGGG
i mm10.chr17                      I 5960 I 1482
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I

a score=1937668.000000
s hg38.chr6_GL000254v2_alt         1300933 340 +   4827813 CCACGGGGTGCCTCCCTGATCTCCTGCAGATCTCCTTGAGTCACATTCCAAAAGAAGGGAAGGAAAATGGGACCAACGCTAAAACATCCCTCTCCCTCTTG---TGAGGAGGAAGAGTCCTCCCGGGTTTTCAGATCCTATACTAGAGAGTGA--CTGAGGGCCTGCCCTGCACTCTGGGACAGTTAAAGGATGAAGTCTCTGAGGGAAAGGAGGGGAAGACAATCCCTGAAATACTGATCCGCGGTCCCATTTGTCCCCACAGCAGCCTTGGGCACCAGGAATTTTCCTCTCAGGCCTTGTTCTCTGCC----TCACACTCAATGTGTATTTGTGGGTCTGATTCCAG
s panTro5.chr6                    30171823 340 + 175400573 CCACGGGGCGTCTCCCTGATCTCCTGCAGATCTCCTTGAGTCACATTCCAAAAGAAGGGAAGGAAAATGGGACCAACGCTAAAACATCCCTCTCCCTCTTG---TGAGGAGGAAGAGTCCTCCCGGGTTTTCAGATCCTATACTGGAGAGTGA--CTGAGGGCCTGCCCTGCACTCTGGGACAATTAAAGGATGAAGTCTCTGAGGGAAAGGAGGGGAAGACAATCCCTGGAATACTGATCCGCCGTCCCCTTTGTCCCCACAGCAGCCTTGGGCACCAGGAATTTTCCTCTCAGGCCTTGTTCTCTGCC----TCACACTCAATGTGTATTTGTGGGTCTGATTCCAG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30402453 340 + 173848474 CCACGGGGCGTCTCCCTGATCTCCTGCAGATCTCCTTGAGTCACATTCCAAAAGAAGGGAAGGAAAATGGGACCAACGCTAAAACATCCCTCTCCCTCTTG---TGAGGAGGAAGAGTCCTCCCGGGTTTTCAGATCCTATACTGGAGAGTGA--CTGAGGGCCTGCCCTGCACTCTGGGACAATTAAAGGATGAAGTCTCTGAGGGAAAGGAGGGGAAGACAATCCCTGGAATACTGATCCGCGGTCCCCTTTGTCCCCACAGCAGCCTTGGGCACCAGGAATTTTCCTCTCAGGCCTTGTTCTCTGCC----TCACACTCAATGTGTATTTGTGGGTCTGATTCCAG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             56605 340 +   2037526 CCACGGGGTACCTCCCTGATCTCCTGCAGATCTCCTTGAGTCACATTCCAAAAGAAGGGAAGGAAAATGGGACCAACGCTAAAACATCCCTCTCCCTCTTA---TGAGGAGGAAGAGTCCTCCCGGGTTTTCAGATCCTATGCTAGAGAGTGA--CTGAGGGCCTGCCCTGCACTCTGGGACAATTAAAGGATGAAGTCTCTGAGGGAAGGGAGGGGAAGACAATCCCTGAAATACTGATCCGCGATCCCCTTTGTCCCCACAGCAGCCTTGGGCACCAGGAATTTTCCTCTCAGGCCTTGTTCTCTGCC----TCACACTCAATGTGTATTTGTGGGTCTGATTCCAG
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74737233 343 + 122973662 CCACGGGGTGCCTCCCTGATCTCCTGCAGATCTCCTCGAGTCACATTCCAAAAGAAGAGAAGGAAAATGGGACCAACGCTAAAACATCCCTCTCCCTCTTGTCCTGAGGAGGAAGAGTGCTCCTGGGTATTCAGATCCTATACCAGAGAGTGA--CTGAGGGCCCGCCCTGCACTCTGGGACAATTAAAGCATGAAGTCTCTGAGGGAAGGGAGGGGAAGACAATCCCTGGAATACTGATCAGCGGTCCCCTTTGTCCCCACAGCAGCCTTGGGCACCAGGAATTTTCCTCTCAGGCCTTGTTCTTTGCC----TCACACTCCATGTGTATTCGTGGGTCTGATTCCAG
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30559880 342 + 172585720 CCAAGGGGCACCTCCCTGATCTCCTGCAGATCTGCCCGAACCACCTTCTAAAAGAAGGGGAGGAAAATGGGACCAACGCTAAAACATCCCCCTCTCTCTTGTCCTGAGGAGGAAGAGTCCTCCTGGGTTTCCAGATCCTACACCAGAGAGTGA--CTGAGGGCCTGCCCTGCACTCTGGGACAA-TAAAGGATGAAGTTTCTGAGGGAAAGGAGGGGAAGACAATACCTGGAATACTGATCAGCTGTCCCCTTTGTCCCCGCAGCAGCCTTGGGCACCAGGAATTTTTCTCTCAGGCCTTGTTCTCTGCC----TCACACTCAATCTGTATTTGTGGGTCTGACTCCAG
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      183169 342 +    231697 CCAAGGGGCGCCTCCCTGATCTCCTGCAGATCTGCCCGAACCACCTTCTAAAAGAAGGGGAGGAAAATGGGACCAACGCTAAAACATCCCCCTCTCTCTTGTCCTGAGGAGGAAGAGTCCTCCTGGGTTTCCAGATCCTACACCAGAGAGTGA--CTGAGGGCCTGCCCTGCACTCTGGGACAA-TAAAGGATGAAGTTTCTGAGGGAAAGGAGGGGAAGACAATACCTGGAATACTGATCAGCTGTCCCCTTTGTCCCCGCAGCAGCCTTGGGCACCAGGAATTTTTCTCTCAGGCCTTGTTCTCTGCC----TCACACTCAATCTGTATTTGTGGGTCTGACTCCAG
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1            105075 338 +   1495729 CCAAGGGGCGCCTCCCAGATCTCCTGCAGATCCCCCCGACCCATCTTCCAA---AAGGAGAGGAAAATGGGACCAACGCTAAAACATCCCTCTCCCTCTTGTCCTGAGGAAGAAGAGTCCTTCTGGGTTT-CATATCCTACACCAGAGAGTGA--CTGCGGACTCGCCCTGTGCTCTGGGACAATTAAAGGATGAAGTCTCTGAGGGAAAGGA-GGGAAGACAATCCCTGGAATACTGATCAGCTGTCCCCTTTGACTCCGCAGCAGCCTTGAGCACCAGGCATTTTCCTCTCAGCCTTTGTTATCTGCC----TCACAGTCAATGTGTATCTGTTGGTCTGATTCCAG
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            217283 341 -    863181 CCGCGGGGCGCCTCCCTGATCTCCTGCAGATCTGCCCGAGTCACCTTCCAAAAGAAGGGGAGGAAAATGGGACCAACGCTAAAACATCCCTGTCCCTCTTGTCCTGAGGAGGAAGAGT-TTCCTGGGTTT-CAGATCCTATACGAGAGAATGA--CTAAGGGCCCGCCCTGCACTCTGGGACAATTAAGGAATGAAGTCTCTGAGGGAAAGGAGGGGAAGCCAATCCCTGGAATACTGAACAGCTGTCCCCTTTGACCCCTCAGCAGCCTGGGGCACGAGGAATTTTCCTCTCAGCCTTTGTTACCTGCC----TCACACTCAATGTGTATCTGTTGGTCTGATTCCAG
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    68830 341 -    117593 CCGCGGGGCGCCTCCCTGATCTCCTGCAGATCTGCCCAAGTCACCTTCCAAAAGAAGGGGAGGAAAATGGGACCAACGCTAAAACATCCCTCTCCCTCTTGTCCTGAGGAGGAAGAGTCCTCCTGGGTTTCCAGATCCTATACCAGAGAGTGA--CTGAGGGCCCGCCCTGCACTCTGGGACAA-TAAAGGATGAAGTTTCTGAGGGAGAGGA-GGGAAGACAATCCCTGGAATACTGATCAGGTGTCCCCTTTGTCCCCACAGCAGCCTTGTGCACCAGGAATTTTCCTCTCAGGCCTTGTTCTCTGCC----TCACACTCAGTCTGAATTTGTGGGTCTGATTCCAG
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             18106 336 -    735854 CCGCGGGGCGCCTCCCTGATCTCCTGCAGATCTGCCCGACCCACCTTCCAAAAGAAGGGAAGGAAAATGGGACCAACGTTAAAACATTCCTCTTCCTCTTGTCCTGAGGAGGAAGAGTCCTCGTGGGTTTCCATATCCCATACC----AGTGA--CTGCGGGCCCGCCCTGCACTCTGGGACAA-TAAAGGATGAAGTTTCTGAGGGAGAGGA-GGGAAGACAAT-TCTGGAATACTGATCAGCTATCCCCTTTGTCCCAGCAGCAGCCTTGGGCACCAGGAATTTTCCTCTCAGGACTTGTTCTCTGCC----TCACACTCAATCTGTATTTGTGGGTCTGATTCCAG
i manLeu1.NW_012107142v1          C 0 C 0
s colAng1.NW_012115577v1             49979 340 -   1829203 CCATGGGGCGCCTCCCTGATCTCCTGCAGATTTCCCCGAGCCACCTTCCAAAAGAAGGGAAGGAAAATCGCACCAACATTAAAATATTCCTCTTCCACTTGTCCTGAGGAAGAAGAGTCCTCCTGAGTTT-CATATCTTATACCAGAGAGTGA--CTGAGGGCCTGCACTGCACTCTGGGACAATTGAAAGATT--GTCTCCCAGGGAAAGGAGGGGAAGACAATCCCTGGAATACTGATCAGCTGTCCCCTTTGACCCCCCAGCAGGCTTGGGCACCAGGAAGTTTCTTTTCAGCCTTTGTTATCTGCC----TCACACACAATGTGTATCTGTTGGTCTGATTCCAG
i colAng1.NW_012115577v1          C 0 C 0
s otoGar3.GL873550                17304260 338 -  18854210 ACGCGGGGCACCTCCCACATCTCTTGTAGA-CTTCCCGGCTCCGGGTCCACAAGTAGGGGAGGAAAATGGGCCCAACGC-AGAATATCACTCTCATTCTGGTCCAGAGCAGGAAGACGCCCCCTGAGTGTCCAGGTCCTGTACCTGAGAGTGACTCTGAGAGCCCGCCCTTCCCTCTGGGACAGTTAAGAGATGAAGTCTCCCAGGGA-AGGAGGGACACACAGTCCCTGAAATCCTGGTCAGCGGTTCCCAGTGACCCTGCAGCAACCTTGGGCACCATGACGTTTTCTCTCAGGCCTTGTTCTCTGCCCAGGTCA--------GTGTGTTTGGAGGTCTGATTCCAG
i otoGar3.GL873550                C 0 C 0
e mm10.chr17                      58006650 1482 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I

a score=4855555.000000
s hg38.chr6_GL000254v2_alt         1301273 782 +   4827813 CTTTTTTGA---CCTCGGCCTCCGCTCAGGTCAGGACCAGAAATCTCTGTTC-CGGCCTCAGACACTAAAACTTTCTAAGGAATAGAAGATTGCCCCAGGTGCCTGTGTCTAGACTGGTGTCTGAGT----TGCTCCCTTCCCCACTTCAGATGTCCCGTCAATTTTCAGGATGGTCCCATGAGG----------------------------------TGGAATGTCCCATGAG-GAATGCAAAGTGCCTG----AATTTTCTGACTCTTCCCCTCAGA-ACCCCAAAAGACTCACATGACCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCTCTGGGCTTCTACCCTGTGGAGATCACACTGACCCAGTAGTGGGATGGACAGGACCAAATGTAGGATGCAGAGGTTGTGGAGACCACACCTGCAGGGT---ACAGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGTCTTCTGGAGAGGAGCAGAGATACACATGCCATGTGCAGCACGATGGGCTGCCAGAGCCCCTCACCCTGAGATGGG--TAAGGAAGGGGATGA-GGGG--TCATGTCTCTTCTCACGGGAACTAGGAGCCCTTCTGGAGCCCTTCAGCAAG--GTCAGGGTTTGAGGCCTGATGGTCAGGGCCCCTCACGTTCCCCTCCTTTCTTACAGCTGTCTTCCCAGCCCACCATCCCCAT-CATGGGCATCGTTACTGTCCTGGTTGTTCTTGGTGCTGTTTTCACCAGAGCTGTGGTCACTGCTGTGATGTGGAAGAATAAG-----AGCCCAGGTAGGAAAGGGG--TGAGC-------TCCGAGTTTTCTTCTT
s panTro5.chr6                    30172163 782 + 175400573 CTTTTTTGA---CCTCGGCCTCCGCTCAGGTCAGGACCAGAAATCTCTGTTC-CGGCCTCAGACACTAAAACTTTCTAAGGAATAGAAGATTGCCCCAGGTGCCTGTGTCTAGACTGGTGTCTGAGT----TGCTCCCTTCCCCACTTCAGGTGTCCCGTCAATTTTCAGGATGGTCCCATGAGG----------------------------------TGGAATGTCCCATGAG-GAATGCAAAGTGCCTG----AATTTTCTGACTCTTCCCCTCAGA-ACCCCAAAAGACTCACATGACCCACTACCCCATCTCCGACCATGAGGCCACCCTGAGGTGCTGGGCTCTGGGCTTCTACCCTGTGGAGATCACACTGACCCAGTAGTGGGATGGACAGGACCAAATGTAGGATGCAGAGGTTGTGGAGACCACACTTGCAGGGT---ACAGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGTCTTCTGGAGAGGAGCAGAGATACACATGCCATGTGCAGCACGATGGGCTGCCAGAGCCCCTCACCCTGAGATGGG--TAAGGAAGGGGATGA-GGGG--TCATGTCTCTTCTCACGGGAACTAGGAGCCCTTCTGGAGCCCTTCAGCAAG--GTCAGGGTTTGAGGCCTGATGGTCAGGGCCCCTCACGTTCCCCTCCTTTCTTACAGCTGTCTTCCCAGCCCACCATCCCCAT-CATGGGCATCGTTACTGTCCTGGTTGTTCTTGGTGCTGTTTTCACCAGAGCTGTGGTCACTGCTGTGATGTGAAAGAATAAG-----AGCCCAGGTAGGAAAGGGG--TGAGC-------TCCGAGTTTTCTTCTT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30402793 783 + 173848474 CTTTTTTGA---CCTCGGCCTCCGCTCAGGTCAGGACCAGAAATCTCTGTTC-CGGCCTCAGACACTAAAACTTTCTAAGGAATAGAAGATTGCCCCAGGTGCCTGTGTCTACACTGGTGTCTGAGT----TGCTCCCTTCCCCACTTCAGGTGTCCCGTCAATTTTCAGGATGGTCCCATGAGG----------------------------------TGGAATGTCCCATGAG-GAATGCAAAGTGCCTG----AATTTTCTGACTCTTCCCCTCAGA-ACCTCAAAAGACTCCCATGACCCACCACCCCATCTCTGACCATGAGACCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGTGGAGATCACACTGACCCAGTAGTGGGATGGGGAGGACCAAATGTAGGATGCAGAGCTTGTGGAGACCACACCTGCAGGGT---ACAGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTTTCTTCTGGAGAGGAGCAGAGATACACATGCCATGTGCAGCACGAGGGGCTACCAGAGCCCCTCACCCTGAGATGGG--TAAGGAAGGGGATGA-GGGG--TCATGTCTCTTCTCACGAGAACTAGGAGCCCTTCTGGAGCCCTTCAGCAAG--TTCAGGGTTTGAGGCCTGATGGTCAGGGCCCCTCACGTTCCCCTCCTTTCTTACAGCTGTCTTCCCAGCCCACCATCCCCATCCATGGGCATCGTTACTGTCCTGGTTGTTCTTGGTGCTGTTTTCACCAGAGCTGTGGTCACTGCTGTGATGTGAAAGAATAAG-----AGCCCAGGTAGGAAAGGGG--TGAGC-------TCCGAGTTTTCTTCTT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             56945 781 +   2037526 CTTTTTTGA---CCTCGGCCTCCGCTCAGGTCAGGACCAGAAATCTCTGTTC-CGGCCTCAGACACTAAAACTTTCTAAGGAATAGAAGATTGCCCCAGGTGCCTGTGTCTAGACTGGTGTCTGAGT----TGCTCCCTTCCCCACTTCAGGTGTCCCGTCAATTTTCAGGATGGTCCCATGAGG----------------------------------TGGAATGTCCCATGAG-GAATGCAAAGGGCCTG----AATTTTCTGACTCTTCCCCTCAGA-ACCCCAAAAGACTCACATGACCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCTCTGGGCTTCTACCCTGTGGAGATCACACTGACCCAGTAGTGGGATGGATAGGACCAAATGTAGGATGCAGAGGTTGTGGAGACCACACCTGCAGGGT---ACAGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGTCTTCTGGAGAGGAGCAGAGATACACATGCCATGTGCAGCACGATGGGCTGCCAGAGCCCCTCACCCTGAGATGGG--TAAGGAAGGAGATGA-GGGG--TTATGTCTCTTCTCACGGGAACTAGGAGCCCTTCTGGAGCCCTTCAGCAAG--GTCAGGGTTTGAGGCTTGATGGTCAGGGCCCCTCATGTTCCCCTCCTTTCTTACGGCTGTCTTCCCAGCCCACCAT-CCCAT-CATGGGCATCGTTACTGTCCTGGTTGTTCTTGGTGCTGTTTTCACCAGAGCTGTGGTCACTGCTGTGATGTGGAAGAATAAG-----AGCCCAGGTAGGAAAGGGG--TGAAC-------TCCGAGTTTTCTTCTT
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74737576 785 + 122973662 CTCTTTTGAGTCCCTCGGCCTCCGCTCAGGTCAGGACCAGAAATCTCTGTTC-CGGCTTCACACACTAGAACTTTATAAGGAATAGAAGATTGCCCCAGGTGCCTGTGTCTAGACTGGTGTCTGAGT----TGCTCCCTTCCCCACTTCAGGTGTCCCGTCAATTTTCAGGATGGTCCCATGAGG----------------------------------TGGAATGTCCCATGAG-GAATGCAAAGTGCCTG----AATTTTCTGACTCTTCCCCTCAGA-ACCCCAAAAGACTCACATGACCCACCACCCCATCTCCGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGTGGAGATCACATTGACCCAGTAGTGGGATGGGGAGGACCAAATGTAGGATGCAGAGCTTGTGGAGACCAGACCTGCAGGGT---ACAGAACCTTCCAGAAGTGGGCAGCTGTGGTGATGTCTTCTGGAGAGGAGTAGAGATACACATGCCATGTGCAGCACTAGGGGCTGCCAGAGCCCCTCACCCTGAGATGGG--TAAGGAGGGGGATGA-GGGG--TCATATCTCCTCTCACGGGAACTAGGAGCCTTTCTGCAGCCCTTCAGCAAG--GTCAGGGTTTGAGGCCTGATGGTCAGGGCCCCTCACGTTCCCCTCCTTTCTTACAGCTGTCTTCCCAGCCCACCATCCCCAT-CGTGGGCATCGTTACTGTCCTGGTTGTTCTTGGTGCTGTTTTCACCAGAGCTGTGGTCACTGCTGTGATGTGGAAGAATAAG-----AGACCAGGTAGGAAAGAGG--TGAGC-------TCCGAGTTTTCTTCTT
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30560222 771 + 172585720 CTCTTTTAAGTCCCTCAGCCTCCGCTCAGGTCAGCACCAGAAATCTCTGTTC-CGGCCTCAGACACTAGAACTTTCCAAGGAATAGGAGATTTCCCCAGGTGCC--TGTCCAGACTGGTGTCTGAGT----TGCTCCCTTCCCCACTTCAGGTGTCCTATCAATTCTCAGGATGGTCCCATGAAG----------------------------------TGGAATGTCCCATAAG-GAATGCAAAGTGCCTG----AATGTTCTGACTCTTCCCCTCAGA-ACCCCAAAAGACACACATGACCCACCACCCCATCTCCAACCATGAGGCCACCCTGAGGTGCTGGGTCCTGGGCTTCTGCCCTGTGGAGATCACACTGACCCAGTAGCGGGATGGGGAGGACCAAATGTAGGATGC--AGTTTATGGAGACCAAACCTGCAGGGT---ACAGAACCTTCCAGAATTGGGCCGCTGTGGTGGTGTCTTCTGGAGAGGAGCAGAGATACACATGCCATGTGCAGCACAAGGGGCTGCCAGAGCCCCTCACCCTGAGGTGGG--TAAGGAGGGGGATGC-GGGG--TCACGTCTCTTCTCACGGGAAGCAGGAGTCCTTCTGGAGCCCTTCAGCAAG--GTCAGGGTTGGAGGCCTGATGGTCAGAGCCCCTCATGTTCCCCTCCTTTCTTAGAGCTGTCTTCCCAGCCCACCATCCCCAT-CTTGGGCATTGTTACTGTCCTGGTTGTTCTTGGT---------------GCTGTGGTCACTGCTGTGATGTGGAGGAATAAGAGCCCAGCCCGGGTAGGAAAGGGG--TGAGC-------TCTGAGTTTTCTTCTT
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      183511 786 +    231697 CTCTTTTAAGTCCCTCAGCCTCCGCTCAGGTCAGCACCAGAAATCTTTGTTC-CGGCCTCAGACACTAGAACTTTCCAAGGAATAGGAGATTTCCCCAGGTGCC--TGTCCAGACTGGTGTCTGAGT----TGCTCCCTTCCCCACTTCAGGTGTCCCATCAATTCTCAGGATGGTCCCATGAAG----------------------------------TGGAATGTCCCATAAG-GAATGCAAAGTGCCTG----AATGTTCTGACTCTTCCCCTCAGA-ACCCCAAAAGACACACATGACCCACCACCCCATCTCCAACCATGAGGCCACCCTGAGGTGCTGGGTCCTGGGCTTCTGCCCTGTGGAGATCACACTGACCCAGTAGCGGGATGGGGAGGACCAAATGTAGGATGC--AGTTTATGGAGACCAAACCTGCAGGGT---ACAGAACCTTCCAGAATTGGGCCGCTGTGGTGGTGTCTTCTGGAGAGGAGCAGAGATACACATGCCATGTGCAGCACAAGGGGCTGCCAGAGCCCCTCACCCTGAGGTGGG--TAAGGAGGGGGATGC-GGGG--TCACGTCTCTTCTCACGGGAAGCAGGAGTCCTTCTGGAGCCCTTCAGCAAG--GTCAGGGTTGGAGGCCTGATGGTCAGAGCCCCTCATGTTCCCCTCCTTTCTTAGAGCTGTCTTCCCAGCCCACCATCCCCAT-CTTGGGCATTGTTACTGTCCTGGTTGTTCTTGGTGCTGTGGTCACTGGAGCTGTGGTCACTGCTGTGATGTGGAGGAATAAGAGCCCAGCCCAGGTAGGAAAGGGG--TGAGC-------TCCGAGTTTTCTTCTT
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1            105413 781 +   1495729 CTCTTCTGAGTCCCTCAGCTTCCACTCAAgtaaagaccagaaatctctgttc-ctgcctcagacactagaactttctaaggaataggagattg-------------tgtccaggatggtgTCTGGGTTCTGTGCTCCCTTCCCCACCCCTGGTGTCCTGTCCATTCTCAGGATGGGCACATGTAT-----------------------------GCTGCTGGAGTGTCCCATTAG-GAATGCAAAGTGCCTG----AATTTTCTGACTCTT-GACTAGGA-TCCCCCAGAGACACATGTGACCCACCACCCCGTCTCAGACCATGAGGCCACCTTGAGGTGCTGGGCCCTGGGCTTCTACCCTGTGGAGATCACACTGACCCAGCAGCAGGATCGGAAGGACCAAATTCAGGATGCAGAGCTTGTGGGGACCAGATCTACAGGGT---ATAGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGTCTTCTGGAGAGGAGCAGAGATACACATGCCATGTGCAGCACGAGGAGCTGCCAGAGCCCCTCACACTGAGATGGG-CTAAGGAGATGAATGAGGGGG--TCATGTCCCTTCTCAGGGAAAGCAGGAGCCCTTCTGGAGCCCTTCAGCTGG--GTCAGGGCT-GAGGCCTGGGGGTCAGGGCCCCTCACGGTCCCCTCCTTTCTTAGGGCCATCTTCCCAGCCCACATTCCCCAT-TGTGGGCATTGTTACTGTCCTGGATGTTCTTGGTGCTGTGGTCCCGGGAGCTGTGGTCGCTGCTGTGATGTGGAAGAATAAG-----AGCCCAGGTAGGAAATAGG--TGAAC-------TCTGAGTTTTCTTCTT
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            217624 771 -    863181 CTCTTTTAAGTCCCTCTGCCTCTGCTCAGGTCAGGACCAGAAATCTCTGTTC-CGGCCTCAGACACTAGAACTTTCCAAGGAATAGGAGATTACCCCAGGTGCC--TGTCCAGACTGGTGTCTGAGT----TGCTCCCTTCCCCACTTCAGGTGTCCCATCAATTCTCAGGATGGTCCCATGAGG----------------------------------TGGAATGTCCCATGAG-GAATGCAAAGTGCCTG----AATGTTCTGACTGTTCCCCTCAGA-ACCTCAAAAGACACACATGACCCAACACCCCATCTCCAACCATGAGGTCACCCTGAGGTGCTGGGTCCTGGGCTTCTGCCCTGTGGAGATCACACTGACCCAGTAGCAGGATGGGGAGGACCAAATGTAGGATGC--AGTATGTGGAGACCAGACCTGCAGGGT---ACAGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGTCTTCTGGAGAGGAACAGAGATACACATGCCATGTGCAGCACGAGGCGCTGCCAGAGCCCCTCACCCTGAGGTGGG--TAAGGAAGGGGATGA-GGGG--TCACGTCTCTTCTCACAGGAAGCAGGAGTCCTTCTGGAGCCCTTCAGCAAG--GTCAGGGTTGGAGGCCTGATGGTCAGGGCCCCTCACGTTCCCCTCCTTTCTTAGAGCTGTCTTCCCAGCCCACCAACCCCAT-CTTGGGCATTGTTACTGTCCGGGTTGTTCTTGGT---------------GCTGTGGTCACTGCTGTGATGTGGAGGAATAAGAGCCCAGCCCGGGTAGGAAAGGGG--TGAGC-------TCCGAGTTTTCTTCTT
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    69171 786 -    117593 CTCTTTTAAGTCCCTCTGCCTCGGCTCAGGTCAAGACCAGAAATCTCTGTTC-CGGCCTCAGACACTAGAACTTTCCAAGGAATAGGAGATTTCCCCAGGTGCC--TGTCCAGACTGGTGTCTGAGT----TGCTCCCTTCCCCACTTCAAGTGTCCCATCAATTCTCAGGATGGTCCCATGAGG----------------------------------TGGAATGTCCCATGAG-GAATGCAAAGTGCCTG----AATGTTCTGACTCTTCCCCTCAGA-ACCCCAAAAGACACACATGACCCAACACCCCATCTCCAACCATGAGGCCACCCTGAGGTGCTGGGTCCTGGGCTTCTGCCCTGTGGAGATCACACTGACCCAGTAGCGGGATGGGGAGGACCAAATGTAGGATGC--AGTTTATGGAGACCAGAGCTGCAGGGT---ACAGAACCTTCCAGAAGTGGGCAGCCGTGGTGGTGTCTTCTGGAGAGGAGCAGAGATACACATGCCATGTGCAGCATGAGGCGCTGCCAGAGCCCCTCACCCTGAGGTGGG--TAAGGAGGGGGATGA-GGGG--TCACGTCTCTTCTCACGGGAAGCAGGAGTCCTTTTGGAGTCCTTCAGCAAC--ATCAGGGTTGGAGGCCTGATGGTCAGGGCCCCTCACGTTCCCCTCCTTTCTTAGAGCTGTCTTCCCAGCCCACCATCCCCAT-CTTGGGCATTGTTACTGTCTTGGTTGTTCTTGGTGCTGTGGTCACTGGAGCTGTGGTCACTGCTGTGATGTGGAGGAATAAGAGCCCAGCCCGGGTAGGAAAGGGG--TGAGC-------TCCGAGTTTTCTTCTT
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             18442 789 -    735854 CTCTTTTAAGTCCCTCAGCCTCCACTCAGGCCAGGACCAGAAGTCTCTGTTC-CGGCCTTAGACACTAGAACTTTCCAAGGAATAGGAGATTTCCCCAGGTGCCTGTGTCCAGACTGGTGTCTGAGT----TGCTCCCTTCCCCACTTCAGGTGTCCCATCAATTCTCAGGATGGTCCCATGAGG----------------------------------TAGAATGTCCCATGAG-GAATGCCAAGTGCCTG----AATGTTCTGACTCTTCCCCTCAGATCCCCCAAAAGACACACATGACCCACCACCCCATCTCCAACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGTGGAGATCACACTGACCCAGTAGCGGGATGGGAAGGACCAAATGCAGGATGC--AGTTTATGGAGACCAGACCTGCAGGGT---ACAGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGTCTTCTGGAGAGGAGTAGAGATACACATGCCATGTGCAGCACGAGGGGCTGCCGGAGCCCCTCACCCTGAGGTGGG--TAAGGAGGGGGATGA-GGGG--TCACGTCTCTTCTCACGGGAAGCAGGAGTCCTTCTGGAGCCCTTCAGCAAC--GTCAGGGTTGGAGGCCTGATGGTCATGGCCCCTCACGTTCCCCTCCTTTCTTAGAGCTGTCTTCCCAGCCCACCAACCCCAT-CTTGGGCATCGTTACTGTCCTGGTTGTTCTTGGTGCTGTGGTCACTGGAGCTGTGGTCACTGCTGTGATGTGGAGGAACAAGAGCCCAGCCCGGGTAGGAAAGGGG--TGAAC-------TCCAAGTTTTCTTCTT
i manLeu1.NW_012107142v1          C 0 C 0
s colAng1.NW_012115577v1             50319 794 -   1829203 CTCTTCTGAGTCCCACAGCCTCCACTCGGGTCAAGACGAGAAATCTCTGTTC-CCGCCTTAGACACTAGAACTTTCCAAGGAATAGGAGACTATCCCAGGTGCCTCTGTCCAGGTTGGTGTCTGGGTTCTGTGCTCCCTTCCCCACCCCAGGTGTCCCAGCTATTCTCAGGATGGTCACATGGGC-----------------------------ACTCCTGGAGTATCCCATGAG-GAATACAAAGTGCCTG----AATTTTCTGACTCTTCCCCTCAGA-TACCCTAAAGACACACGTGACCCACGACCCCATCTCTGATCATGAGGCCACCCTGAGGTGCTAAGTCCTGGGTTTCTACCCTGTGGAGATCATACTGACCTGGCAGTGGGATGGGGAGGACCAAATCCAGGACACAGAGGTTGTAGGGACCAGATCTGCAGAGT---ACAGAACCTTCTAGAAGTGGGTAGCTGTGGTGGTGTCTTCTGGAGAGAAGTAGAGATACACATGCCATGTGCAGCACGAGGTGCTTCCAGAGCCCCTCACCCTGAGATGAG-CTAAGGAGATGAATGA-GGGG--TCATGTCTCTTCTCAGGGAAAGCAGGAGTCCTTCTGGAGTCCTTCACCAGG--GTCAGGGCT-GAGGCATGAGGGTCAGGGCCCCTCACATTCGCCTCCTTTTTCAGGGCCATCCTCCCAGCCCACATTCCCCAT-CGTGGGCATCGTTACTGTCCTGGTTGTTCTTGGTGCTGTGGTTCCCACAGCTGTGGTCGTTGCTGTGATATTGAAGAATAAG-----AGACCAGGTAGGAAAGAGG--TGAGC-------TCCGAGTTTTCTTCTT
i colAng1.NW_012115577v1          C 0 C 0
s otoGar3.GL873550                17304598 836 -  18854210 TCCTTCCGGGTCACTCAATCTCTACTCAGATCAGGTCTAGAAGTCCCTCTTCTCCTCTTTAGAGACTGGAACTTTC-AAGGAACAGGACATCATCCAAGATCCCTGGGTCAAGGCTGGTGTCTGGATTTTACATTCCTTTCCCCACCCCAGTTGTCCTGTCAATTCTCAGGATGTCACTCTGAGGTCACTCCAGAGTATGTCACTTCAGGGTGCTCTGCTGGATTGTCCC-TAAG-GGAAGCAAAGTGCCTGAATTAATTTTCTGACTCCTCCCTTCAGA-TCCCCCTGAGACACGTGTGATGCGCCACCCCATTTCTGACCATGACGCCATCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACATGGAGCTTATAGAGACCAGGCCTTCAGGGGACAACAGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTACCTTCTGGAGAGGAGCAGAGATACACGTGCCATGTGCAGCACAAGGGGCTGCGGGAGCCCCTCACCCTGAGATGGG--GTAAGAAGGGGAGGA-GGGGCATCACA-CTCTTCTCAGGGAAAGCAGGGGCCCTTCTGGAGCCCTTCAGCAGGGAGTCAGGGCT-GAGGCCTGG-GGTCAG-GCCCCTCACCTTCCTGTCCTTTCCCAGAGTCATCTTCTCAGCCCAGCATCCCCAT-GGTGGACATCGTTGCTGGCCTAGTTCTCCTTGGAACTATGCTCACTGGAGCTGTGGTTGCTGCTGTGATTTGGATTAAGAAA-----TGCTTAGGTAAGGTAGGGG--TGAGTAGCAGGATCTACATTTTCTTTTT
i otoGar3.GL873550                C 0 I 184
s mm10.chr17                      58008132 736 -  94987271 CTGTTTTGA---TCTCAGTCCCCGTTTCTGCCAA-------------TGTTC-ACAGATCGGGAACAGA-----TCCAAGGAATAG-ATATTTCTTCA---TCCTAAGTCCATGCT-GTGTAAGAGC----TGCT---------GTTTCAATTTTCAACCCAACTATGGGGATGATCACATGACT-----------------------------AATGCTCATATAGTCCACAGGAGAGAACAGAAGGTTGT----TACCCTCTGACTCTTCTCCTCAGACTCCCCCCAAAACAAATGTGGCCCATCATTCAACGCTTGAAGGTGATGTCACCCTGAGATGCTGGGCCCTGGATTTCCACCCTGCTGTCATCATCCTGACCTGGCAGAGGGATGAGAAGGACCTGACTCAGGACATGGACCTTGTGGAGACCAGGCCTGCAGAGG---ACGAAGCCTTCCAGAAGTGGGCAGCTGTGGTGCTGCCTTCAGGAGAAGAGCATAAATACACATGCCATGTGCAACCTGAGGGGCTGTCTGAACCTCTCATCCTGAAATGGAGTAAAGGTAGTGTGTGT-AGGT--ACAGAGTCTGTCCTTGGGAAAGCAGGAACCCTTCTGCAGACCTTGAGCATA--TCC-----CTTAGTTCTA-----------TCCTCCTCTCCCTTCTCTCTTCCAGAGCCATCTTTTTCTCCCACCACACCCAT-CACGGGGATCACTGCTGGTCTGGTTCTCCTTCCAGTTTTGGTCACTGGAGGTG----CGCTGCCATAGTGGTGAGGAGGGAA-----AGTGCAGATAAGGATGGTGTTTGAGA-------TTTGGGTTTTC-----
i mm10.chr17                      I 1482 C 0
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I

a score=1682970.000000
s hg38.chr6_GL000254v2_alt         1302055 300 +   4827813 CCATTGGTGGATTCCCA------------------------------------------------------GCCCCAGAT---------------------GGGAGTTGGCT-----------TGTATCCTGCCTAGT---CATGAGGCA---CCATCTCT-----------------------------GTCTATCAACACTTACTCTTT---------------------TGTAAAGAACTTGTGAAAATGAAGGACAAATTTATCACCT--TCATTGGAGTCATGGGAACCTGACTCCCA--GCAGTCACAGGTC--AGGGGAAGGTACCC-----GCAGAGGACAGACCT-C-ACTAGGTCAATTAGTCCAGTTTCAACACATCCTCTTACCTAGGGTTTCCTGATTCTGACCTGG----GTCTGCAGTCACAGTTCTGGACACTCCTC-TGGGAT
s panTro5.chr6                    30172945 300 + 175400573 CCATTGGTGGATTCCCA------------------------------------------------------GCCCCAGAT---------------------GGGAGTTGGCT-----------TGTATCCTGCCTAGT---CGTGAGGCA---CCATCTCT-----------------------------GTCTATCAACACTTACTCTTT---------------------TGTAAAGAACTTGTGAAAATGAAGGACAAATTTATCACCT--TCATTGGAGTCATGGGAACCTGGCTCCCA--GCAGTCACAGGTC--AGGGGAAGGTACCC-----GCAGAGGACAGACCT-C-ACTAGGACGATTAGTCCAGTTTCAACACATCCTCTTACCTAGGGTTTCCTGATTCTGACCTGG----GTCTGCAGTCACAGTTCTGGAAACTCCTC-TGGGAT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30403576 300 + 173848474 CCATTGGTGGATTCCCA------------------------------------------------------GCCCCAGAT---------------------GGGAGTTGGCT-----------TGTATCCTGCCTAGT---CGTGAGGCA---CCATCTCT-----------------------------GTCTATCAACACTTACTCTTT---------------------TGTAAAGAACTTGTGAAAATGAAGGACAAATTTATCACCT--TCATTGGAGTCATGGGAACCTGGCTCCCA--GCAGTCACAGGTC--AGGGGAAGGTACCC-----GCAGAGGACAGACCT-C-ACTAGGACGATTAGTCCAGTTTCAACACATCCTCTTACCTAGGGTTTCCTGATTCTGACCTGG----GTCTGCAGTCACAGTTCTGGAAACTCCTC-TGGGAT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             57726 300 +   2037526 CCATTGGTGGATTCCCA------------------------------------------------------GCCCCAGAT---------------------GGGAGTTGGCT-----------TGTATCCTGCCTAGT---CGTGAGGCA---CCATCTCT-----------------------------GTCTATCAACACTTACTCTTT---------------------TGTAAAGAACTTGTGAAAATGAAGGACAAATTTATCACCT--TCATTGGAGTCATGGGAACCTGACTCCCA--GCAGTCACAGGTC--AGGGGAAGGTACCC-----GCAGAGGACAGACCT-C-ACTAGGACAATTAGTCCAGTTTCAACACATCCTCTTCCCTCAGGTTTCCTAATCCTGACCTGG----GTCTGCAGTCACAGTTCTGGACACTCCTC-TGGGAT
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74738361 300 + 122973662 CCATTGGTGGATTCCCA------------------------------------------------------GCCCCAGAT---------------------AGGAGTTGGCT-----------TGTATCCTGCCTAGT---CGTGAGGCA---CCATCTCT-----------------------------GTCTATCAACACTTACTCTTT---------------------TGTAAAGAACTTGTGAAAATGAAGGACAAATTTATCACCT--TCATTGGAGTCATGGGAACTTGACTCCCA--GCAGACACAGGTC--AGGGGAAGGTACCC-----GCAGAGGACAGATCT-C-ACTAGGACAATTAGTCCAGTTTCAACACATCCTCTTACCTAGGGTATCCTGATCCTGACCTGG----GTCTGCAGTCACAGTTCTGGAAACTCCTC-TGGGAT
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30560993 304 + 172585720 CCATTGGTGGATTCCCA------------------------------------------------------GCCCCAGAA---------------------AGGAGTTGGCT-----------TGTATTCTGCCTAGT---TGTGAGGCA---CCATCTCTGTGC-------------------------CTCTATCAACACTTCCTCTTT---------------------TGCAAAGAACTTGTGAAAATGAAGGACACATTTATCACCT--TCATTGGAGTCATGGGAACCTGACTCCCA--GCAGTCACAGGTC--CGGGGAAGGTACCC-----TCATGGGACAGACCT-C-ACTAGGACAATTAGTCCAGTTTCAACACATCGTCTTACCTAGGGTTTCCTAATCCTGACCTGG----GTCTACAGTCACAGTTCTGGAAACTCCTC-TGGGAT
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      184297 304 +    231697 CCATTGGTGGATTCCCA------------------------------------------------------GCCCCAGAT---------------------AGGAGTTGGCT-----------TGTATTCTGCCTAGT---CATGAGGCA---TCATCTCTGTGC-------------------------CTCTATCAACACTTACTCTTT---------------------TGTAAAGAACTTGTGAAAATGAAGGACACATTTATCACCT--TCCTTGGAGTCATGGGAACCTGACTCCCA--GCAGTCACAGGTC--AGGGGAAGGTACCC-----GCATAGGACAGACCT-C-ACTAGGACAATTAGTCCAGTTTCAACACATCCTCTTCCCTCGGGTTTCCTGATCCTGACCTGG----GTCTACAGTCACAGTTCTGGAAACTCCTC-TAGGAT
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1            106194 320 +   1495729 CCATTGGTGGATTTCAA------------------------------------------------------GCCCCAGAT---------------------GGACGTTGGTT-----------CATTTCCTGCCTAGT---TGTAAGGCA---CCATCTCCATGAACATTTA--CCCTGTTCAGA---CGCCCTGTCAACTCTTACTCTTT---------------------TGTAAAGCACCTGTGAAATT---GGACAACTGTATCACCT--TGATTGTGGACATGGGAACCTGACTCCCA--GCAGTCACAGGTC--AGGGGAAGGTCCCT-----GCTGAGGACAGACCT---AGTAGGACAATTGGTCCAGCTTCAACATATCCTCTTCCCTCAGGTTTCCTGATCCTGACCTGG----GTCTGCAGTCACAGTTCTGGAAACTCCTC-TGGGAT
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            218395 304 -    863181 CCATTGGTGGATTCCCA------------------------------------------------------GCCCCAGAA---------------------AGGAGTTGGCT-----------TGTATTCTGCCTAGT---CGTGAGGCA---CCATCTCTGTGC-------------------------CTCTATCAACACTTACTCTTT---------------------TGTAAAGAACTTGTGAAAATGAAGGACACATTTATCACCT--TCATTGGAGTCATGGGAACCTGACTTCCA--GCAGTCACAGGTC--AGGGGAAGGTACCC-----GCATAGGACAGACCT-C-ACTAGGACAATTAGTCCAGTTTCAACACATCCTCTTCCCTCGGGTTTCCTAATCCTGACCTGG----GTCTGCAGTCACAGTTCTGGAAACTCCTC-TGGGAT
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    69957 304 -    117593 CCATTGGTGGATTCCCA------------------------------------------------------GCCCCAGAT---------------------AGGAGTTGGCT-----------TGTATTCTGCCTAGT---CGTGAGGCA---CCATCTCTGTGC-------------------------CTCTATCAACACTTACACTTT---------------------TGTAAAGAACTTGTGAAAATGAAGGACACATTTATCACCT--TCATTGGAGTCATGGGAACCTGACTCCCA--GCAGTCACAGGTC--AGGGGAAGGTACCC-----GCATAGGACAGACCT-C-ACTAGGACAATTAGTCCAGTTTCAACACATCCTCTTCCCTCGGGTTTCCTAATCCTGACCTGG----GTCTACAGTCACAGTTCTGGAAACTCCTG-TAGGAT
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             19231 304 -    735854 CCATTGGTGGATTCCCA------------------------------------------------------GCCCCAGAT---------------------AGGAGTTGGCT-----------TGTATTCTGCCTAGT---TGTGAGGCA---CCATCTCTGTGC-------------------------CTCTATCAACACTTACTCTTT---------------------TGTAAAGAACTTGTGAAAATGAAGGACACATTTATCACCT--TCATTGGAGTCATGGGAACCTGACTCCCA--GCAGTCACAGGTC--AGGGGAAGGTACCC-----GCATAGGACAGACCT-C-ACTAGGACAATTAGTCCAGTTTCAACACATCCTCTTACCTAGGGTTTCCTAATCCTGACCTGG----GTCTACAGTCACAGTTCTGGAAACTCCTC-TAGGAT
i manLeu1.NW_012107142v1          C 0 C 0
s colAng1.NW_012115577v1             51113 325 -   1829203 CCATTGGTGGATTTCAA------------------------------------------------------GCCCCAGAT---------------------GGAAGTTGGCT-----------CATTTCCTGCCTAGT---TGTGAGGCA---CCATCTCCTGAACCATTTA--CCCTGTTCAGA---TGCCCTGTCAACTCTTGCTCTTT---------------------TGTAAAGCACCTGTGATATGGAAGCACAAATTTATCACCT--TGATTGTGGTCATGGAAACCTGACTCCCA--GCAGTCACAGGTC--AGGAGAAGGTCCCT-----GCTGAGGACAGACGT-C-AGGAGGACAATTGGTCCAGCTTCAACACTTCCTCTTTCCTTGGGTTTCCTGATCCTGACCTGG----GTCTGCAGTCACAGTTCTGGAAACTCCTCTTGGGAT
i colAng1.NW_012115577v1          C 0 C 0
s otoGar3.GL873550                17305618 415 -  18854210 ccacggctgggttcaaacccgccaccatgggtatatggggcaggcgctctattcactgagccacaggtgccgcccCAGGTCTGCATTTTCTTGTCCCATGGGGGTGTCAACCCCAAGTAACAGTGTATCCCGCCCCATTACTGGGAAGTG---CCATCCACACACACCTGCATCCCCAGCCTGGGGCCCTTTGTGCCAACACTTACTCTTT---------------------TGTGTAGCACACATGACAATGAAGGACAGACTTTTGATGTGGTGATTGTAGTGATGGGGACCTGATCCCCA--GCAGTCACAGGTCAGAGAGGAAGGACTTT-----GCTCAGGACAGACCTCC-AGGAGGGCAGTTGATTCACTT--------TTTCCTTCCCCTGTGATTCCTAATCCTGCCCTTG----GCCTTCAATCACAATTATGGAAACTTCTC-TGGGAT
i otoGar3.GL873550                I 184 I 113
s mm10.chr17                      58008868 336 -  94987271 ---CTGAGATATTTCAA------------------------------------------------------GCCCTGGAT---------------------ACAAATGTGCC-----------AATTTTCTGTTTTGTTACTATAAAGTGTATCCATTAGTGTGTCTTAGCC------------------ACTTAGCGGCCtttttttttttttttttttttAAACCAACTGTGTAAGGAACACCTGGAAATAGAGGAGGGGGTGGTG--CT--TCA-------CACAGAGGACT--CTACTAATGTGGACACAAATC--TGAGGCAGGGTCTCCAGGAAGAGGGAACGGGCCT-CTGGGAGGGCACTCCATCTTTTTCCTATACAAATCCTTTCTTCATGTTTTTTGACCCTGTTCCAGGTCTGTCTGCAACCATACCCCTGGAATATTGCC-TGAGGT
i mm10.chr17                      C 0 C 0
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I

a score=396822.000000
s hg38.chr6_GL000254v2_alt         1302355 63 +   4827813 CTCATGA-CCCTGCTTCCTCCCTGG--------CCTTTCACAGTTTATTTTC-T----------TTCCACAGATGGAAAAGGA
s panTro5.chr6                    30173245 63 + 175400573 CTCATGA-CCCTGCTTCCTCCCTGG--------CCTTTCACAGTTTGTTTTC-T----------TTCCACAGATGGAAAAGGA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30403876 63 + 173848474 CTCATGACCCCTGCTTCCTCCCTGG--------CCTTTCACAGTTTG-TTTC-T----------TTCCACAGATGGAAAAGGA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             58026 62 +   2037526 CTCATGA-CCCTGCCTCCTCCCTGG--------CCTTTCACAGTTTA-TTTC-T----------TTCCACAGATGGAAAAGGA
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74738661 63 + 122973662 CTCAGGA-CCCTGCTTCCTCCCTGA--------CCTCTCACAGTTTATTTTC-T----------TTCCACGGATGGAAAAGGA
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30561297 64 + 172585720 CTCATGG-CCCTGCCTCCTCCCTGG--------CCTCTCACAGTTTGTTTTCTT----------TTCCACAGATGGAAAAGGA
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      184601 62 +    231697 CTCATGG-CCCTGCCTCTTCCCTGG--------CCTCTCACAGTTTG-TTTC-T----------TTCCACAGATGGAAAAGGA
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1            106514 63 +   1495729 CTCATGG-CCCTGCCTCCTCCCTGG--------CCTCTCACAGTTTGTTTTC-T----------TTCCACAGATGGAAAAGGA
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            218699 63 -    863181 TTCATGG-CCCTGCCTCCTCCCTGG--------CCTCTCACAGTTTGTTTTC-T----------TTCCACAGATGGAAAAGGA
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    70261 63 -    117593 CTCATGG-CCCTGCCTCTTCCCTGG--------CCTCTCACAGTGTGTTTTC-T----------TTCCACAGATGGAAAAGGA
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             19535 63 -    735854 CTCATGG-CCCTGCCTCCTCCCTGG--------CCTCTCACAGTTTGTTTTC-T----------TTCCACAGATGGAAAAGGA
i manLeu1.NW_012107142v1          C 0 C 0
s colAng1.NW_012115577v1             51438 63 -   1829203 CTCATGG-CCCTGCCTCCTCCCTGG--------CCTCTCACAGTTTGTTTTC-T----------TTCCACAGATGGAAAAGGA
i colAng1.NW_012115577v1          C 0 C 0
s otoGar3.GL873550                17306146 63 -  18854210 CTCATGG-CCCTACCTAGTGCCTGG--------CTTCTCACAGGGCATTTTC-T----------TCCCACAGGTAGAAGAGGA
i otoGar3.GL873550                I 113 C 0
s mm10.chr17                      58009204 80 -  94987271 -CTAGGA-CTAAGAGTTTCCTCTGGAACCAAATCGTTCTGCATTCTGTTCTC-TGCCTTTATCCTCCCAGAGATGGAGAAGGA
i mm10.chr17                      C 0 I 6253
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I

a score=3258919.000000
s hg38.chr6_GL000254v2_alt         1302418 568 +   4827813 GGCAGCTATGCTCAGGCTTCATGCAAGTGTGGTAGGGGT-GGGAAGAGTGAT-CCCTGAGATCCTTGGGATAGTGTAGACAGGAGCCCATGGGGGAGCTCA-CCACCCCAAAATTCCTCCTTTAGTCACATCATCTGTGGGCTCTGACCAGATTTTGTTTTTGTTCCACCCGAAACAG---------------CTCTGATGTGTCTCTCAAGGCTTGTAAAA-TGACAACTTAGGGGGCCTGAAGGGAAGGAGGAGTTGGGGCATAGGGGACACAACTAGGCTCTGGAGATTCTTTGATTTGGAATTTTTCAGGGTGTGGTGGGCTGTT--CAGTGTCACAACTTACTATGACTGATCTGAATTTGTTCATGACTA--TTTTTTTTCTAAG-------------------ACTGCCTTGTGAGGGACTGAGATGCAAGATTTGTTCATGCCTCCCCTTTGTGACTTCAAGGGCCTCTGTCTTCTCTTTCTGCCAAGGCGTCTGAATGTGTCTACATCCCTG-----GTATCATGTGAG-AAGTGGGGAGACCAGCCCACCCTCATGTCCACCATGACCCCtgatattgtttggatctgtgtctccacccaaatctc
s panTro5.chr6                    30173308 583 + 175400573 GGCAGCTATGCTCAGGCTTCATGCAAGTGTGGTAGGGGT-GGGAAGAGTGAT-CCCTGAGATCCTTGGGATAGTGTAGACAGGAGCCCATGGGGGAGCTCA-CCACCCCACAATTCCTCCTTTAGTCACATCATCTGTGGGCTCTGACCAGATTTTGTTTTTGTTCCACCCGAAACAGGGACAGTACCCAGGGCTCTGATGTGTCTCTCAAGGCTTGTAAAA-TGACAACTTAGGGGGCCTGAAGGGAAGGAGGAGTTGGGGCATAGGGGACACAACTAGGCTCTGGAGATTCTTTGATTTGGAATTTTTCAGGGTGTGGTGGGCTGTT--CAGTGTCACCACTTACTATGACTGATCTGAATTCGTTCATGACTA--TTTTTTTTCTAAG-------------------ACTGCCTTGTGAGGGACTGAGATGCAAGATTTATTCATGCCTCCCCTTTGTGACTTCAAGGGCCTCTGTCTTCTCTTTCTGCCAAGGTGTCTGAATGTGTCTACATCCCTG-----GTATCATGTGAG-AAGTGGGGAGACCAGCCCACCCTCATGTCCACCATGACCCCtgatattgtttggatctgtgtctccacccaaatctc
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30403939 583 + 173848474 GGCAGCTATGCTCAGGCTTCATGCAAGTGTGGTAGGGGT-GGGAAGAGTGAT-CCCTGAGATCCTTGGGATAGTGTAGACAGGAGCCCATGGGGGAGCTCA-CCACCCCACAATTCCTCCTTTAGTCACATCATCTGTGGGCTCTGACCAGATTTTGTTTTTGTTCCACCCGAAACAGGGACAGTACCCAGGGCTCTGATGTGTCTCTCAAGGCTTGTAAAA-TGACAACTTAGGGGGCCTGAAGGGAAGGAGGAGTTGGGGCATAGGGGACACAACTAGGCTCTGGAGATTCTTTGATTTGGAATTTTTCAGGGTGTGGTGGGCTGTT--CAGTGTCACCACTTACTATGACTGATCTGAACTCGTTCATGACTA--TTTTTTTTCTAAG-------------------ACTGCCTTGTGAGGGACTGAGATGCAAGATTTGTTCACACCTCCCCTTTGTGACTTCAAGGGCCTCTGGCTTCTCTTTCTGCCAAGGAGTCTGAATATGTCTACATCCCTG-----GTATCATGTGAG-AAGTGGGGAGACCAGCCCACCCTCATGTCCACCATGACCCCtgatattgtttggatctgtgtctccacccaaatctc
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             58088 582 +   2037526 GGCAGCTATGCTCAGGCTTCATGCAAGTGTGGTAGGGGT-GGGAAGAGTGAT-CCCTGAGATCCTTGGAATAGTGTAGACAGGAGCCCATGGGGGAGCTCA-CCA-CCCACAATTCCTCCTTTAGTCACATCATCTGTGGGCTCTGACCAGATTTTGTTTTTGTTCAACCCCAAACAGGGACAGTACCCAGGTCTCTGATGTGTCTCTCAAGGCTTGTAAAA-TGACAACTTAGGGGGCCTGAAGGGAAGGAGGAGTTGGGGCATAGGGGACACAAATAGGCTCTGGAGATTCTTTGATTTGGAATTTTTCAGGGTGTGGTGGGCTGTT--CAGTGTCACCACTTACTATGACTGATCTGAATTTGTTCATGACTA--TTTTTTTTCTAAG-------------------ACTGCCTTGTGAGGGACTGAGATGCAAGATTTGTTCATGCCTCCCCTTTGTGACTTCAAGGGCCTCTGTCTTCTCTTTCTGCCAAGGCGTCTGAATGTGTCTGCATCCCTG-----GTATCATGTGAG-AAGTGGGGAGACCAGCCCACCCTCATGTCCACCATGACCCCtgatattgtttggatctgtgtctccacccaaatctc
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74738724 579 + 122973662 GGCAGCTATGCTCAGGCTACATGTAAGTGTGGCAGGGGT-GGG-AGAGTGAA-TCCTGAGATCCTTGGGATAGCATAGACAGGAGCCCATGGGGGAGCTCACCCACCCCACAATTCCTCCTTTAGTCACATCACCTGTGGGCTCTGACCAGATTTTGTTTTT-TTCCACCCCAAACAGGGAAAGTA-CCAGGGCTCTGATGTGTCTCCCAAGGCTTGTAAAAGTGACACCTTAGAGGGCCTGAAGTGAATGAGGAGTTGGGGCAGAGGGGATACAACTAGAATTTGGAG--TCTTAGATTTGCTATTCTTGAGGGTGTGGTGGGCTGTT--CAGTGTCACCACTTACTATGACTGACCTGAATTTGTTCATGACTA--TTTTTTTTCTAAG-------------------ACTGCCTTGTGAGGGACTGAAATGCAAGATTTGTTCATGCCT-CCCTTTGTGACTTCAAGGGCCTCTGGCTTCTCTTTCTGCCAAGGCATCTGAATGTGTCTATATCCCTG-----GTATCATGTGAG-AAGTGGGGAGACCAGCCCACCCTCATGTCCACCATGACCCCtgatatcatttgggtctgtgtccccacccaaatctc
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30561361 567 + 172585720 GGCAACCATGCTCAGGCTTCATGTAAGTGTGGTAGGGGT-GGG-AGAGTGATGGGATGAGATCCTTGGGATAGTGTAGACAAGAGCCCATGGGGGAGCTCACCCACCCTACAATTCCTCCTTTAGTCACATCACTTGTGCGCTCTGAATAGATTTTGTTTTTGTTGCACCCCAAACAGGGACAGTACCCAGGGCTCTGATGTGTCTCTCAAGGCTTGTAAAAGTGACATATTAGAGGACCTGAAGTGAAAGAGGAGTTGGGGCAGAGGGGATACAGTTAGAATTTGGAG--TCTTTGATTTGCTATTCTTGAGGGTGTGGTGGGCTGTT--CAGTGTCAC------------------TAAATTTGTTCATGACTATTTTTTTTTTCTAAG-------------------ACTGCCTTGTGAGGGACTGAGATGCAAGATTTGTTCATGCCTCCCCTTTGTGACTTCAAGAGCCTCTGGCTTCTCTTTCTGCCAAGGCATCTGAATGTGTCTACATCCCTG-----GTATCATGTGAG-AAGAGGGGAGACCAGCCTATCCTCATGTCCACCATGACCCCtgatattgtttggatctgtgtccccacccatgtctc
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      184663 564 +    231697 GGCAGCCATGCTCAGGCTTCATGTAAGTGTGGTAGGGGT-GGG-AGAGTGAT-CCCCGAGATCCTTGGGATAGTGTGGACAGGAGCCCATGGGGGAGTTCACCCACCCCACAATTCCTCCTTTAGTCACATCACCTGTGCGCTCTGAATAGATTTTGTTTTCGTTCCACCCCAAACAGGGACAGTACCCAGGGCTCTGATGTGTCTCTCAAGGCTTGTAAAAGTGACATATTAGAGGACCTGAAGTGAAAGAGGATTTGGGGCAGAGGAGATACAGTTAGAATTTGGAG--TCTTTGATTTGCTATTCTTGAGGGTGTGGTGGGCTGTT--CAGTGTCAC------------------TAAATTTGTTCATGACTA--TTTTTTTTCTAAG-------------------ACTGCCTTGTGAGGGACTGAGATGCAAGATTTGTTCATGCCTCCCCTTTGTGACTTCAAGAGCCTCTGGCTTCTCTTTCTGCCAAGGCATCTGAATGTGTCTACATCCCTG-----GTATCATGTGAG-AAGAGGGGAGACCAGCCTACCCTCATGTCCACCATGACCCCtgatattgtttggatctgtgtccccacccagatctc
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1            106577 580 +   1495729 GGCAGCCATGGTCAGGCTTCATGTAAGTGTGGTAGGGGT-GGG-AGAGTGAT-CCCTGAGATCCTTGGGATAGTGTAGACAGGAGCCCATGGGGGAGCTCACCCACCCCACAATTCCTCCTTTAATCACATCACCTGTGAGCTCTGAACAGAT----TTTTTGTTCCACCCTGAACAGGAACAGTACCCAGGGCTCTGATGTGTCCCTCAAGGCTTGTAAAAGTGACACATTAGAGGACCTGAAGTGAAGGAGGAGTTGGGGCAGATGGGACACAACTAGGCTCTGGAGATTCTTTGATTTGGGATTTGTCAATGTGTGGTGGGCTGTT--CAGTGTCACCACCTACCATGGCTGACTTGAATTTGTTCACGATTA--TTTTTTTTCTAAG-------------------ACTGCCTTGTGAGCGACTAAGATGCAAGATTTGTTCATGGCTCCTCTTTGAGACTTCAAGGGCCTCTGACTTCTTTTTCTGCCAAGCAGTCTGAATGTGACTATGTCCCTG-----GTAACAGATGAG-AAGTGGGGATACCAGCCAACCCTCATGTCCACCATGACCCCtgatatcatttggatctatgtccctacccagatccc
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            218762 565 -    863181 GGTAGCCGTGCTCAGGCTTCATGTAAGTGTGGTAGGGGCAGGA-AGGGTAAT-ACCTGAGATCCTTGGGATAGTGTGGACAAGAGCCCATGGGGGAGCTCACCCACCCCACAATTCCTTCTTTAGTCACATCACCTGTGCGCTCTGAATAGATTTTGTTTTTGTTCCACCCCAAACAGGGACAGTACCCAGGGCTCTGATGTGTCTCTCAAGGCTTGTAAAAGTCACATATTAGAGGACCTGAAGTGAAAGAGGAGTTGGGGCAGAGGGGATACAGTTAGAATTTGGAG--TCTTTGATTTGCTATTCTTGAGGGTGTGGTGGGCTGTT--CAGTGTCAC------------------TAAATTTGTTCATGACTA--TTTTTTTTCTAAG-------------------ACTGCCTTGTGAGGGACTGAAATGCAAGATTTGTTCATGCCTCCCCTTTGTGACTTCAAGAGCCTCTGGCTTCTCTTTCTGCCAAGGCATCTGAATGTGTCTACATCCCTG-----GTATCATGTGAG-AAGAGGGGAGACCAGCCTATCCTCATGTCCACCATGACCCCtgatattgtttggatctgtgtccccacccatgtctc
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    70324 582 -    117593 GGCAGCCGTGCTCAGGCTTCATGTAAGTGTGGTAGGGGT-GGGAAGAGTGAT-ACCTGAGATCCTTGGGATAGTGTGGACAGGAGCCCATGGGGGAGCTCACCCACCCCATAATTCCTTCTTTAGTCACATCACCTGTGCGCTCTGAATAGATTTTGTTTTTGTTCCACCCCAAAGAGGGACAGTACCCAGGGCTCTGATACGTCTCTCAAGGCTTGTAAAAATGACATATTAGAGGACCTGAAGTGAAAGAGGATTTGGGGCAGAGGGGATACAGTTAGAATTTGGAG--TCTTTGATTTGCTATTCTTGAGGGTGTGGTGGGCTGTT--CAGTGTCACCATTTACTATGACTGACCTAAATTTGTTCATGACTA--TTCTTTTTCTAAG-------------------ACTGCCTTGTGAGGGACTGAGATGCAAGATTTGTTCATGCCTCCCCTTTGTGACTTCAAGAGCCTCTGGCTTCTCTTTCTGCC-AGGCATCTGAATGTGTCTACATCCCTG-----GTATCATGTGAG-AAGAGGGGAGACCAGCCCACCCTCATGTCCACCATGACCCCtgatattgtttggatctgtgtccccacccatgtctc
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             19598 582 -    735854 GGCAGCCGTGCTCAGGCTTCATGTAAGTGTGGTAGGGGT-GGG-AGAGTGAT-GCCTGAGATCCTTGGGATAGTGTAGACAGGAGCCAATGGGGGAGCTCACCCACCCCACAATTCCTCCTTTAGTCACATCACCTGTGCGCTCTGAACAGATTTTGTTTTTGTTGCACCCCAAACAGGGACAGTACCCAGGGCTCTGATGTGTCTCTCAAGGCTTGTAAAAGTGACATATTAGAGGACCTGAAGTGAAAGAGGAGTTGGGGCAGAGGGGATACAGTTAGAATTTGGAG--TCTTTGATTTGCTATTCTTGAGGGTGTGGTGGGCTGTT--CAGTGTCACCATTTACTATGACTGACCTAAATTTGTTCATGACTT--TTTTTTTTCTAAG-------------------GCTGCCTTGTGAGGGACTGAGATGCAAGATTTGTTCATGCCTCCCCTTTGTGACTTCAAGAGTCTCTGGCTTCTCTTTCTGCCAAGGCATCTGAATGTGTCTACATCCCTG-----GTATCATGTGAG-AAGAGGGGAGACCAGCCTACCCTCATGTCCACCATGACCCCtgatattgtttggatctgtgtccccacccagatctc
i manLeu1.NW_012107142v1          C 0 C 0
s colAng1.NW_012115577v1             51501 582 -   1829203 GGCAGCTATTCTCAGGCTACATGTAAGTGTGGTAGGGGT-GGG-AGAGTGAT-CCCTGAGATCCTTGGGATAGTGTAGACAGGAGCCCATGGGGGAGCTCA-CCACCCCACAATTCCTCCTTTAGTCACATCACCTGTGAGCTCTGAGCAGATTTTGTTTTTATTCCAGCCCGAACAGAAACAGTACCCAGGACTCTGATGTGTCTCTCAAGGCTTGTAAAAGTGACACCTTAGAGGGCCTGAAGTGAAGGAGGAGTTGGGGCAGATGGGACACAACTAGGCTCTGGAGATTCTTTGATTTGA-ATTTTTCAGTGTGGGGTGTGATGTT--CAGTGTCACCACTTACCATGACTGACTTGAATTTGTTCATGACTA--TTTTTTTTCTAAG-------------------ACTGCCTTGTAAGTGACTGAGATGCAAGATTTGTTCATGGCTCCTCTTTGAGACTTCAAGGGCCTCAGGCTTCTCTTTCTGCCAAGGCGTCTGAATGAGTCTATGTTCCTG-----GTAAAAGGTGAG-AAGTGGGGAGACCAGCCCACCCTCATGTCCACCATGAGCCCtgatatcatttggatctgtttccccacccaaatctc
i colAng1.NW_012115577v1          C 0 C 0
s otoGar3.GL873550                17306209 585 -  18854210 GGGGGCTACATTCAGGCTGTAGGTAAGTGTGG--------AGT-ATGGTGAT-CTGTGAGGTCTCTGGGATAGTATAGACAGGAGCCCATGGTAGAGCTTC-CAGCCACATAATTCTTCCTTTAGCCATATCTTTTGTGGGCTCTGAACAAGTCCTGTTTTC-TCCTACCCCGGGCAGTGACAGTACCTAGGATCCTG---TGTCCCTCATAGCTTATAAAGTTGAGACCCTAGGTGGCCTGATATGA--GGATAAGTGAGGCAGAGGGGACACAGCTGGGCTGTAGGGATTCTTTGATGGGACATT-TTGAGTGTGCCGTGGGCTGCTGAGAGTGTCACCACTTACCGTGACTGATCTGAATTTGTTCCTTACTT--TTTTCTGAGTAAGGAAAAGGTAGCCTGAAGCAGCTACCTTGTGTGGGATTAAG----------TGTTCACACCTCCCTTTTGAGACTTTAAGAGTTTCTAACTTCTTTTTCTGCAAATGCTTCTGAATGACTCTGCATCCCTATTTTTGCATAATTTGAGTAGGCAGGGAGGCCAGCCCACCCCCACATGCACAGTGACCCTT-CTCCTACACTGACCTGTGTTCCTTCCTGATTATC
i otoGar3.GL873550                C 0 N 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I

a score=1718290.000000
s hg38.chr6_GL000254v2_alt         1302986 315 +   4827813 atgttcacttgtaatcactaaggttggaggtggcacctca-gggaggtgattggctcatgaggatggatccttcatgaatagtttaggaccatctctttggtgctgttcttgtgatagttctcacaacgtctggtgtttaaaagtgtgtggtacctccctgctctctctccctcctactccaggcttgtaagtcatgcctacttccccttaaccttccagcatgattgaaaatttcctgaggtcctctcataagttgagcagatgccaga---atcatactttc-atatagcctgcagaaccatgagccaatttaaacct
s panTro5.chr6                    30173891 315 + 175400573 atgttcacttgtaatcactaaggttggaggtggcacctca-gggaggtgattggctcatgaggatggatccttcatgaatagtttaggaccatctctttggtgctgttcttgtgatagttctcacaacgtctggtgtttaaaagtgtgtggtacctccctgctctctctccctcctactccaggcttgtaagtcatgcctacttccccttaaccttccagcatgattgaaaatttcctgaggccctctcataagttgagcagatgccgga---atcatactttc-atatagcctgcagaaccatgagccaatttaaacct
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30404522 315 + 173848474 atgttcagttgtaatccctaaggttggaggtggtacctca-gggaggtgattggctcatgaggatggatccttcatgaatagtttaggaccatctctttggtgctgttcttgtgatagttctcacaacgtctggtgtttaaaagtgtgtggtacctccctgctctctctccctcctactccaggcttgtaagtcatgcctgcttccccttaaccttccagcatgattgaaagtttcctgaggccctctcataagttgagcagatgctgga---atcatactttc-atatagcctgcagaaccatgagccaatttaaacct
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             58670 315 +   2037526 atgttcacttgtaatcactaaggttggaggtggcacctca-ggaaggtgattggctcatgaggatggatccttcatgaatagtttaggaccatctctttggtgctgttcttgtgatagttctcacaacgtctggtgtttaaaagtgtgtggtacctccctgctctctctccctcctattccaggcttgtaagtcatgcctacttccccttaaccttccagcatgattgaaagtttcctgaggccctctcataagttgagcagatgccgga---atcatactttc-atatagcctgcagaaccatgagccaatttaaacct
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74739303 315 + 122973662 atattcacttgtaatccctaaggttggaggtggcacctca-cggaggtggttggcccatgaggatggatctttcatgaatggcttagaaccatctctttggtgctgttcttgtgatagttctcacaacatctggtgtttaaaagtgtgtggtacctccctgctctctctccctcctactccaggcttgtaagtcatgcctgcttccccttaaccttccagcatgatcgaaagtttcctggggccctctcataagttgagcaaatgccaga---atcatattttc-atacagcctgcagaaccatgagccaatttaaacct
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30561928 315 + 172585720 atgttcacttgtaatctctaaggttggaggtggcacctta-gggaggtgattggctcatgaggatggatccttcatgaatggtttagaaccatctctttggtgctgttcttgtgctagttctcacaagatctggtgtttaaaagtgtgtgccacctccctgctttctttccctcctactccaggcttgtaagtcatgcctgcttccccttaaccttccagcatgattgaaagtttcctgaggccctctcataagttgagcagatgccaga---atcgtactttc-atacagcctgcagaatcgtgagccaatttaaacct
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      185227 315 +    231697 atgttcacttgtaatctctaaggttggaggtggcacctta-gggaggtgattggctcatgaggatggatccttcatgaatggtttagaaccatctctttggtgctgttcttgtgctagttctcacaacatctggtgtttaaaagtgtgtggtacctccctgctctctctccctcctactccaggcttgcaagtcatgcctgcttccccttaaccttccagcatgattgaaagtttcctgaggccctctcataagttgagcagatgccaga---atcgtactttc-atacagcctgcagaaccgtgagccaatttaaacct
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1            107157 316 +   1495729 atgtccacttgtaatgcctaatgttggaggtggtgcctgatgggatgtgattgactcagggggatggatcctccatgaatgctttagagccatctctttgatgctgttcttgtgatagttctcacacgatctggtgtttgaaagtgtgtggcacctccctgctctctctccctcctgctccaggcatatcagtcatgcctgcttccccttaagctttcagcatgattaaaagttttctgaggccctctcgaaagtcgaacacatgccaga---atcatactcct-gtatagcctgcagaaccatgagccaatttaaacct
i macNem1.NW_012012100v1          C 0 I 10042
s cerAty1.NW_012002535v1            219327 315 -    863181 atgttcacttgtaatctctaaggttggaggtggcacctta-gggaggtaattggctcatgaggatggatccttcatgaatggtttagaaccatctctttggtgctgttcttgtgatagttctcacaagatctggtgtttaaaagtgtgtgccacctccctgctttctttccctcctactccaggcttgtaagtcatgcctgcttccccttaaccttccagcatgattgaaagtttcctaaggccgtctcataagtagagcagatgccaga---atcatactttc-atatagcctgcagaactgtgagccaatttaaacct
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    70906 315 -    117593 atgttcacttataatctctgaggttggaggtggcacctca-gggaggtgattggctcatgaggatggatccttcatgaatggtttagaaccttctctttggtgctgttcttgtgatagttctcacaacatctggtgtttaaaagtgtgtgccacctccctgctttctttccctcctactctaggcttgtaagtcatgcctgcttccccttaaccttccagcatgattgaaagtttcctgaggccctctcataagttgaacagatgccaga---atcatactttc-atacagcctgcagaaccgtgagccaatttaaacct
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             20180 318 -    735854 atgttcacttataatctctaaggttggaggtggcatctca-gggaggtgattggctcatgacgatggatccttcatgaatggtttagaaccttctctttggtgctgttcttgtgatagttctcacaacatctggtgtttaaaagtgtgtgccacctccctgctttctttccctcctactccaggcttgtaagtcatacctgcttccccttaaccttccagcatgattgaaagtttcctgaggccctctcataagttgagcagatgccagaatcatcatactttc-atacagcctgcagaaccatgagccaatttaaacct
i manLeu1.NW_012107142v1          C 0 C 0
s colAng1.NW_012115577v1             52083 315 -   1829203 atgtccacttgtaatccctaatgttagaggttgtgcctgatgggagatgattggcttgtggggatagatcctctatgaatggttaagaaccatatctttgatgctgttcttgtgatagttctcacaagatctggtgtttgaaagtgtgtggcacctccctgctctctctccctcctgctccagacatgtcagttatgcctgcttcaccttaaactttcagcatgattgaaagttttctgaggccctctcaaaagttaaatagatgccaga---atcatacttcctgtatagcctgcagaaccatgagccaatttaaac--
i colAng1.NW_012115577v1          C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I

a score=100635.000000
s hg38.chr6_GL000254v2_alt         1303301 23 +   4827813 tctgtctttataaattacccagt
s panTro5.chr6                    30174206 23 + 175400573 tctgtctttataaattacccagt
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30404837 23 + 173848474 tctgtctttataaattatccagt
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             58985 23 +   2037526 tctgtctttataaattatccagt
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74739618 23 + 122973662 tctgtctttataaattacccagt
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30562243 23 + 172585720 tctgtctttataaattatccagt
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      185542 23 +    231697 tctgtctttataaattgtccagt
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            219642 23 -    863181 tctgtctttataaattatccagt
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    71221 23 -    117593 tctgtctttataaattacccagt
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             20498 23 -    735854 tctgtctttataaattatccagt
i manLeu1.NW_012107142v1          C 0 C 0
s colAng1.NW_012115577v1             52398 19 -   1829203 ----tctttataagttacaaatt
i colAng1.NW_012115577v1          C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e macNem1.NW_012012100v1            107473 10042 +   1495729 I

a score=1469763.000000
s hg38.chr6_GL000254v2_alt         1303324 274 +   4827813 ctcaggtatttctttataacagt-tgagaatgaa-taattcagaaaatcggtaccagaagttgggtactgcaataaacgtagctgaaaatgtgaaaatgtctttggaactgggtaacaggtagaggttggaagagtttggagagtttagaagacaagaaaatgggggaaaacttgcaacttcctagaggtttgttaaattgttgtgaccaaaatgctgatagtgatatagacaatagagcccaggctgatgaggtctcagatggagatgaggaact
s panTro5.chr6                    30174229 274 + 175400573 ctcaggtatttctttataacagt-tgagaatgaa-taattcagaaaattggtaccagaagttgggtactgcaataaacgtggctgaaaatgtgaaaatgtctttggaactgggtaacaggtagaggttggaagagtttggagagtttagaagacaagaaaatgggggaaaacttggaacttcctagaggtttgttaaattgttgtgaccaaaatgctgatagtgatatagacaatagagcccaggctgatgaggtctcagatggagatgaggaact
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30404860 274 + 173848474 ctcaggtatttctgtgtaacagt-tgagaatgaa-taattcagagaatcggtaccagaagttgggtactgcaataaacgtagctgaaaatgtgaaaatgtctttggaactgggtaacaggtagaggttggaagagtttggagagtttagaagacaagaaaatgggggaaaacttggaacttcctagaggtttgttaaattgttgtgaccaaaatgctgatagtgatatagacaatagagcccaggctgatgaggtctcagatggagatgaggaact
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             59008 274 +   2037526 ctcaggtatttctgtataacagt-tgagaatgaa-taattcagaaaatcggtaccagaagttgggtactgcaataaacgtagctgaaaatgtgaaaatgtctttggaactgggtaacaggtaaaggttggaagagtttggagagtttagaagacaagaaaatgggggaaaacttggaacttcctagaggtttgttaaattgttgtgaccaaaatgctgatagtgatatagacaatggagtccaggctgatgaggtctcagatggagatgaggaact
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74739641 274 + 122973662 ctcaggtatttctttataacagt-tgagaatgaa-taattcagaaaatcggtatcagaagttgggtagtgcaataaaggtagctgaaaatgtgaaaatgtctttggaactgggtaacaggtagaggttggaagagtttggagagtttagaagacaagaaaatgggggaaaacttggaacttcctagaggtttgttaaattgttgtgaccaaaatgctgacagtgatatggacaatagagtccaggctgatgaggtctcagatggagatgaggaact
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30562266 274 + 172585720 cttaggtatttcttcataacagc-tgagaatgaa-taattcagaaaattggtaataggagttgggtactgcaataaagggagctaaaaatgtgaacatgtctttgaaactgggtaacaggtagaggttggaatagtttggagagtttagaagacaagaaaatgggggaaaacttggaacttcctagaagtttgttaaattgttgggaccaaaatgctgacagtgatatggacaatagagtccaggctgatgaggtctcagatggagatgaggaact
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      185565 274 +    231697 cttaggtatttcttcataacagt-cgagaatgaa-taattcagaaaattggtactaggagttgggtactgcaataaaggtagctaaaaatgtgaaaatgtctttggaactgggtaacaggtagaggttggaatagtttggagagtttagaagacaagaaaatgggggaatacttggaacttcctagaggtttgttaaattgttgggaccaaaatgctgacagtgatatggacagtagagtccaggctgatgaggtctcagatggagatgaggaact
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1            117515 273 +   1495729 ctcaggtatttctttataacagtgtgagaagcaactaattcagaaaattggcaccaggagttggatattgctataaaggtagctgaaaatgtggaaatggctttcaaactgggtaacagacagaggtgggaagactttgaagagttcagaagacaagaaaatgagggaaaatttggaactccctagagatttgttaagttgt---gaccaaaatgctgacagtgatatggacaatagaggccaggctgatgaggtctcagatggagatgaggaact
i macNem1.NW_012012100v1          I 10042 C 0
s cerAty1.NW_012002535v1            219665 274 -    863181 cttaggtatttcttcgtaacagc-tgagaatgaa-taattcagaaaattggtactaggagttgggtattgcaataaaggtagctaaaaatgtgaacatgtctttggaactgggtaacaggtagaggttggaatagtttggagagtttagaagacaagaaaatgggggaaaacttggaacttcctagaagtttgttaaattgttgggaccaaaatgctgacagtgatatggacaatagagtccaggctgatgaggtctcagatggagatgaggaact
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    71244 274 -    117593 cttaggtatttcttcataacagt-tgagaatgaa-taattcagaaaattggtactaggagttgggtactgcaataaagggagctaaaaatgtgaaaatgtctttggaactgggtaacaggtagaggttggaatagtttggagagtttagaagacaagaaaatgagggaaaacttggaacttcctagaggtttgttaaattgttgtgaccaaaatgctgacagtgatatggacaatagagtccaggctgatgaggtctcagatggagataaggaact
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             20521 274 -    735854 cttaggtatttcttcataacagt-tgagaatgaa-taattcagaaaattggtactaggagttgggtactgcaaaaaagggagctaaaaatgtgaaaatgtctttggaactgggtaacaggtagaggttggaatagtttggagagtttagaagacaagaaaatgggggaaaacttggaacttcctagaggtttgttaaattgttgtgaccaagatgctgacagtgatatggacaatagagtccaggctgatgaggtctcagatggagatgaggaact
i manLeu1.NW_012107142v1          C 0 C 0
s colAng1.NW_012115577v1             52417 261 -   1829203 ctcaggtatttctctataacagtgtgagaatcaactaattcagaaaattggcaccacgatttgggtattgcagtaaaggtagctgaaaatgtggaaatggctttggaactgggtaacaagcagaggttggaagagtttggagagttcagaacacaggaaaattaggcaa---------------agagacatgaccccatgttgtgaccaaaatgctgatagtgatatggacaatagagtccaggctgatgaggtctcagatggagatgaggaact
i colAng1.NW_012115577v1          C 0 I 25
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I

a score=35705.000000
s hg38.chr6_GL000254v2_alt         1303598 7 +   4827813 tactggg
s panTro5.chr6                    30174503 7 + 175400573 tactggg
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30405134 7 + 173848474 tactggg
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             59282 7 +   2037526 tactggg
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74739915 7 + 122973662 tactggg
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30562540 7 + 172585720 tactggg
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      185839 7 +    231697 tactggg
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1            117788 7 +   1495729 tattggg
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            219939 7 -    863181 tactggg
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    71518 7 -    117593 tactggg
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             20795 7 -    735854 tactggg
i manLeu1.NW_012107142v1          C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             52678 25 -   1829203 I

a score=19206.000000
s hg38.chr6_GL000254v2_alt         1303605 3 +   4827813 acc
s panTro5.chr6                    30174510 3 + 175400573 acc
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30405141 3 + 173848474 acc
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             59289 3 +   2037526 acc
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74739922 3 + 122973662 acc
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30562547 3 + 172585720 acc
i rheMac8.chr4                    C 0 I 11
s macFas5.chr4_KE145577_random      185846 3 +    231697 acc
i macFas5.chr4_KE145577_random    C 0 I 11
s macNem1.NW_012012100v1            117795 3 +   1495729 acc
i macNem1.NW_012012100v1          C 0 I 3
s cerAty1.NW_012002535v1            219946 3 -    863181 acc
i cerAty1.NW_012002535v1          C 0 I 2517
s chlSab2.chr17_KE148042v1_random    71525 3 -    117593 acc
i chlSab2.chr17_KE148042v1_random C 0 I 11
s manLeu1.NW_012107142v1             20802 3 -    735854 acc
i manLeu1.NW_012107142v1          C 0 I 11
s colAng1.NW_012115577v1             52703 3 -   1829203 acc
i colAng1.NW_012115577v1          I 25 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I

a score=5590927.000000
s hg38.chr6_GL000254v2_alt         1303608 1070 +   4827813 tagagaaaaggtcacttttgttatgcattggcaaagaacttggaggcattctgccccctccttagggatctgtggaactttgaacatgagggtgatgattaagggtatctgatagaagaaatttctaagcagcatagcattcaagatttggctt-cctg-ttgtaatagtctatgcacatatgtgtgagcaaaaaaatgatctgaaactggaactgatatttaaaggggaaATTTAATATccaggacaattcccagtggagctgcaggagcaggacccctaccaggactactaaatggtggagccactggcaatgtgcaagctcagcttggaaaatccataggtattcaattttcacccatgagagcagctatatgggttatgttcagcaaacccaaggatgtggggctgcaaatggcattgtgagcccaccacttgaaccag----tgtgctcaggattcaagatatagggtcaaaggagattattttagagctttaaattttaacatcttccatgatgagtttcagctttgtgaggacactgcattcatttcttttggcccatttattccttttagaatggaaatgtataagaaatgtctcttccactgttgtattaatattttagaagtaaataacc---tttttaaaactttac-------aggctcacagctatagggacttaccttgagtctcagatgagactttggaattttgagttgatgctggaacaacctagcac-atttgggacaatt---gggaaattatcatattttgcaatgggagaaaaa-catgagctctggctggctagggacagaatgcaatgatataaatatttaccccctgatacctcatgttaaaatctgacccccagtgttggatgtggggcctaatgggtgctgtttgggtcatgggggccaatcttttatgaataaagag-atcctgtcctctctcggaagtgaatgaattgttactcttttagtttccaagagagccagttgttaaaaagagcctggcaacttcctaagctctctgttcctctcttaccgtgtgatctctgcacataccagctcccctttgccttct
s panTro5.chr6                    30174513 1070 + 175400573 tagagaaaaggtcacttttgttatgcattggcaaagaacttggaggcattctgccccctccttagggatctgtggaactttgaacatgagggtgatgattaagggtatctgatagaagaaatttctaagcagcatagcattcaagatttggctt-cctg-ttgtaatagtctatgcacatatgtgtgagcaaaaaaatgatctgaaactggaactgatatttaaaggggaaATTTAATATccaggacaattcccagtggagctgcaggagcaggacccctgccaggactactaaatggtagagccactggcaatgtgcaagctcagcttggaaaatccataggtattcaattttcacccatgagagcagctatatgggttatgttcagcaaagccaaggatgtggggctgcaaatggcattgtgagcccaccacttgcaccag----tgtgctcaggattcaagatatagagtcataggagattatttcagagctttaagttttaacatcttccatgatgagtttcagctttgtgaggacactgcattcatttcttttggcccatttattccttttagaatggaaatgtataagaaatgtctcttccactcttgtcttaatattttagaagtaaataacc---tttttaaaactttac-------aggctcacagctatagggacttaccttgagtctcagatgagactttggaattttgagttgatgctggaacaacctagcac-atttgggacaatt---gggaaattatcatattttgcaatgggagaaaaaacatgagctctggctggctggggacagaatgcaatgatataaatatttaccccc-gatacctcatgttaaaatctgacccccattgttggacgtggggcctaatgggtgctgtttgggtcatgggggccaatcttttatgaataaagag-atcctgtcctctctcggaagtgaatgaattgttactcttttagtttccaagagagccagttgttaaaaagagcctggcaacttcctaagctctctgttcctctcttaccgtgtgatctctgcacataccagctcccctttgccttct
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30405144 1070 + 173848474 tagagaaaaggtcacttttgttatgcattggcaaagaacttggaggcattctgccccctcctaagggatctgtggaactttgaacatgagggtgatgattaagggtatctgatagaagaaatttctaagcagcatagcattcaagatttggctt-cctg-ttgtaatagtctatgcacatatgtgtgagcaaaaaaatgatctgaaactggaactgatatttaaaggggaaATTTAATATccaggacaattcccagtggagctgcaggagcaggacccctgccaggactactaaatggtagagccactggcaatgtgcaagctcagcttggaaaatccataggtattcaattttcacccatgagagcagctatatgggttatgttcagcaaagccaaggatgtggggctgcaaatggcattgtgagcccaccacttgcaccag----tgtgctcaggattcaagatatagagtcataggagattatttcagagctttaagttttaacatcttccatgatgagtttcagctttgtgaggacactgcattcatttcttttggcccatttattccttttagaatggaaatgtataagaaatgtctcttccactcttgtcttaatattttagaagtaaataacc---tttttaaaactttac-------aggctcacagctatagggacttaccttgagtctcagatgagactttggaattttgagttgatgctggaacaacctagcac-atttgggacaatt---gggaaattatcatattttgcaatgggagaaaaaacatgagctctggctggctggggacagaatgcaatgatataaatatttaccccc-gatacctcatgttaaaatctgacccccattgttggacgtggggcctaatgggtgctgtttgggtcatgggggccaatcttttatgaataaagag-atcctgtcctctctcggaagtgaatgaattgttactcttttagtttccaagagagccagttgttaaaaagagcctggcaacttcctaagctctctgttcctctcttaccgtgtgatctctgcacataccagctcccctttgccttct
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             59292 1069 +   2037526 tagagaaaaggtcacttttgttatgcattggcaaagaacttggaggcattctgccccctccttagggatctgtggaactttgaacatgagggtgatgattaagggtatctcatagaagaaatttctaagcagcatagcattcaagatttggctt-cctg-ttgtaatagtctatgcacatatgtgtgagcaaaaaaatgatctgaaactggaactgatatttaaaggggaaATTTAATATccaggacaattcctagtggagctgcaggagcaggacccctgccaggactactaaatggtagagccactggcaatgtgcaagctcagcttggaaaatccataggtattcaattttcacccatgagagcagctatatgcgttatgttcagcaaag-caaggatgtggggctgcaaatggcattgtgagcccaccacttgcaccag----tgtgctcaggattcaagatatagggtcaaaggagattatttttgagctttaaattttaacatcttccatgatgaatttcagctttgtgaggacactgcattcatttcttttggcccatttattccttttagaatggaaatgtataagaaatgtctcttccactcttgtattaatatttcagaagtacataacc---tttttaaaactttac-------aggctcacagctatagagacttaccttgagtctcagatgagactttggaattttgagttgatgctggaacaacctagcac-atttgggacaatt---gggaaatcatcatattttgcaatgggagaaaaa-catgagctctggctggctagggacagaaTGCAATGACAtaaatatttaccccctgatacctcatgttaaaatctgacccccagtgttggacgtggggcctaatgggtgctgtttgggtcatgggggccaatcttttatgaataaagag-atcctgtcctctctcggaagtgaatgaattgttactcttttagtttccaagagagccagttgttaaaaagagcctggcaacttcctaagctctctgttcctctcttaccgtgtgatctctgcacataccagctcccctttgccttct
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74739925 1071 + 122973662 tagaggaaaggtcacttttgttatgcattggcaaagaacttggaggcattctgccccctccttagggatctgtggaactttgaacatgagggtgatgattaagggcttctgatagaagaaatttctaagcagcatagcattcaagatttggcct-cctgtttgtaatagtctatgcacatatgtgtgagcaaaaaaatgatctgaaactggaactgatatttaaaggggaaATTTAATATccaggacaattcctagtggagttgcaggagcaggacccatgccaggactactaaatggtagagccactggcaatgtgcaagctcagcctggaaaatccataggtattcaattttcacccatgagagcagctatatgggttatgttcagcaaagccaaggatgtggggctgcaaatggcattgtgagcccaccacttgaaccag----tgtgctcaggattcaagatatagggtcaaaggagattattttagagctttaagttttaacgtcttccatgatgagtttcagccttgtgaggacactgcattcatttcttttggccaatttattccttttagaatagaaatgtataagaaatgtctcttccactcttgtattaatattttagaagtaaataacc---tttttaaaactttac-------aggctcacagctatagagacttaccttgagtctcagatgagactttggaattttgagttgatgctggaacaacctagcac-atttgggacaatt---gggaaattatcatattttgcaatgggagaaaaa-catgagctctggctggctagggacagaatgcaatgatataaatatttactccctgatacctcatgttaaaatctgacccccaatgttggacgtggggcctaatgggtgctgtttgggtcatgggggccaatcttttatgaataaagag-atcctgtcctctctcggaagtgaatgaattgttactctttcagtttccaagagagccagttgttaaaaagagcctggcaacttcctaagctctctgttcctctcttaccatgtgatctctgcacataccagctcccctttgccttct
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30562561 1029 + 172585720 tagaggaaaggtcacttttattatccattggcaaataactttgaggcattatgccccctccctagggatctgtggaactttgaacatgagagtgatgattaagggtatctgatagaagaagtttccaagcagcatagccttcaatatttggcctggctgtttgtcatagcctacgcacatatctgtgagcaaagaaattatctgaaactggaactgatgtttaaaggggaaATTTAATATccaggacaattcctaatggagttgcaggagcaggacctccaccaggactactaaatggtagagtcactggtaatgtgcaagctgagtttggaaaagccataggcattcaattttcacccatgagagcagctatatgggttaggttcagcacagccaaggatgtggggctgcaaatggcattgtgagcccaccacttgcaccag----tgtgctcaggagtcaagatatagagtcaaaggagaatattttagagttttaagttttaacattttccattatgagtttcagccttgtgaggacactgcattcatttcttttggcccatttattc-----------------------------tccttccactcttgtattaatattttagaagtaaataaca---tttttaaaactgtac-------aggctcacagctatagagatttaccttgagtctcagatgagacttcggaattttgagttgatgctggaacaaccaagcac-atttgggacaact---ggaaaattattgtattttgcaatgggagaaaaa-catgagctctgactggctagggacaggaTGTAATGATAtaaatatttaccccctgatacctcatgttaaaatctgacccccaatgttggacat-----------ggtgctgtttgggtcatgggggccaatcttttttgaataaagag-ctactgtcctctcttgtgagtgaataaattgttactt--ttagtttccaagagagctagttgttaaaaagagcctggcaacttctcacactctctgttcctctctta-catgtgatctctgcacataccagctcccccttgccttct
i rheMac8.chr4                    I 11 I 211
s macFas5.chr4_KE145577_random      185860 1037 +    231697 tagaggaaaggtcatttttgttatgcattggaaaataacttggaggcattgtgccccctccctagggatttgtggaactttgaacatgagagtgatgattaagggtatctgatagaagaagtttctaagcagcatagccttcaatatttggcctggctgtttgtcatagcctacgcacatatctgtgagcaaagaaatgatctgaaactggaactgatgtttaaaggggaaATTTAATATccaggacaattcctaatggagttgcaggagcaggacccccaccaggactactaaatggtagagtcactggtaatgtgcaagttgagcttggaaaagccataggcattcaattttcacccatgagagcagctatatgggtcaggttcaggaaagccaaggatgtggggctgcaaatggcattgtgagcccaccacttgcaccag----tgtgctcaggagtcaagatatagagtcaaaggagactattttagagctttaagttttaacatcttccatgatgagtttcagccttgtgaggacactgcattcatttcttttggcccatttattc-------------------------------cttccactcttgtattaatattttagaagtaaataaca---tttttaaaactgtac-------aggctcatagctatagagatttaccttgagtctcagatgagacttcggaattttgagttaatgctggaacaacctagcac-attcgggacaact---ggaaaattattgtattttgcaatgggagaaaaa-catcagctctgactggctagggacaggaTGTAATGATAtaaatattta-cccccgatacctcatgttaaaatctgaccccccattttggacgtggggcctaatgggtgctgtttgggtcatgggggccaatcttttttgaataaagag-ctactgtcctctcttgtgagtgaataaattgttactt--ttagtttccaagagagctagttgttaaaaagagactggcaacttctcacactctctgttcctctctta-catgtgatctctgcacataccagctcccccttgccttct
i macFas5.chr4_KE145577_random    I 11 C 0
s macNem1.NW_012012100v1            117801 1083 +   1495729 ---aggaaaggtcacttttgttatgcattggcaaaggacttggaggtattgtgccccctccctagggatctgtggaacattgaacctgagaatgatgattaagggtatctgatggaagaaatttctaagtagcataacattcaagatttggcctggctgcttgtaatagcctatgcacatatgtgtgagcaaagaaatgacccgaaactggaactgatatttaaagggaaaATTTAATACccaggacaattcctagtgcagctgcaggagcaggacccctgccaggactactacattgcagagccactggcaatgtgcaacctcagcctggaaaagccataggcattcaattttcacccatgagagcagcgatatgggttatgttcagcaaagccataaatgtggggctacaaatggcattatgagcccagaacttgcaccagccaatgtgctcaggattcaaaatatagagttaaaggagattattttagagctttaagttttaatctctgctataatgagattcagcc-tgtgaggacactgcattcatttcttttgacccatttattccttttggaatggaaatgtataagaaatgtctcttccactgttgcattaatactttagaggtaaataacatattttttaaaatgttactggttcaaagcttatagctgtgagaacttaccttgagtctcagatgagactctggaattttgagttgatgctggaacaacctaaaataatttgggacaatt---gggagattattgtgttttgcaatgtgagaagaa-catgagctttggCTGGCTAGCGACAGGGtgcaatgatataagtatttatcccttgatacctcatgttaaaatctgatgcccactgtgggatgtggggcccaatgggtgctgtttggattatggggaccaatcttttatgaatagagagaatactgccctctcttg-gagtgaatgaattgttgctctattattttccaagagagctagttgttaaaaagagcctggcaaattgctactctctctgttcctctgttaccatgtgatctctgcacatactagctcccctttgcattct
i macNem1.NW_012012100v1          I 3 C 0
s cerAty1.NW_012002535v1            222466 1058 -    863181 tagaggaaaggtcacttttattttgcattggcaaataacttggaggcattatgccccctccctagggatctgtggaactttgaacatgagagtgatgattaagggtatctgatagaagaagtttctaagcagcatagccttcaatatttggcctggctgtttgtcatagcctacgcacatatctgtgagcaaagaaatgatctgaaactggaactgatgtttaaaggggaaATTTAATATccaggacaattcctaatggagttgcaggagcaggacctccaccaggactactaaatggtagagtcactggtaatgtgcaagctgagtttggaaaagccataggcattcaattttcacccatgagagcaactatatgggttaggttcagcacagccaaggatgtggggctgcaaatggcattgtgagcccaccacttgcaccag----tgtgctcaggagtcaagatatagagtcaaaggagaatattttagagttttaagttttaacatcttccattatgagtttcagccttgtgaggacactgcattcatttcttttggcccatttattccttttggaatggaaatgtgtaagaaatgtcccttccactcttgtattaatattttagaagtaaataaca---tttttaaaactgtac-------aggctcacagctatagagatttaccttaagtctcagatgagacttcggaattttgagttgatgctggaacaaccaagcac-atttgggacaact---ggaaaattatcgtattttgcaacaggagaaaaa-catgagctctgACTGGCTAGGGATAGGATGTAATGATAtaaatatttaccccctgatacctcatgttaaaatctgacccccaatgttggacat-----------ggtgctgtttgggtcatgggggccaatcttttttgaataaagag-ctacggccctctcttatgagtgaataaattgttactt--ttagtttccaagagagctagttgttaaaaagagcctggcaacttctcacactctctgttcctctctta-catgtgatctctgcacataccagctcccccttgccttct
i cerAty1.NW_012002535v1          I 2517 I 211
s chlSab2.chr17_KE148042v1_random    71539 1072 -    117593 tagaggaaaggtcacctttgttatgcattggcaaataacttggaggcattgtgccccctccctagggatctgtggaactttgaacatgagagtgatgattaagggtatctgatagaagaagtttctaagcagcatagccttcaatatttggcctggctgtttgtcatagcctacgcacatatctgtgagcaaagaaatgatctgaaactggaactgatgtttaaaggggaaATTTAATATccaggacaattcctaatggagttgcaggagcaggacccccaccaggactactaaatggtaaagtcactggtaatgtgcaagctgagcttggaaaagccataggcattcaattttcacccatgagagcagctatatgggttatattcagcaaagccaaggatgtggggctgcaaatggcattgtgagcccaccacttgcaccag----tgtgctcaggattcaagatatagagtcaaaggagaatattttagagctttaagttttaacatcttccgtgataagtttcagccttgtgaggacactgcattcatttcttttggcccatttattccttttggaatggaaatgtataggaaatgtcccttccactcttgtattaatattttagaagtaaataaca---tttttaaaactttat-------aggctcacagctatagagatttaccttgagtctcagatgagacttcggaattttgagttgatgctggaataacctagcac-attcgagacaact---ggaaaattattgtattttgcaatgggagaaaaa-catgagctctgactggctagggacaggaTGTAATGATAtaaatatttaccccctgatacctcatattaaaatctgacccccaatgttggacgtggagcctaatgggtgctgtttgggtcatgggggccaatcttttatgaataaagag-ctactgtcctctctcgtgagtgaataaattgttactcttttagtttccaagagagctagttgttaaaaagagcctggcaacttcttacactctctgttcctctcttaccatgtggtctctgcacataccagctcctctttgccttct
i chlSab2.chr17_KE148042v1_random I 11 I 211
s manLeu1.NW_012107142v1             20816 1071 -    735854 tagaggaaaggtcacttttgttatgcattggtaaataacttggaggcattgtgccccctccctagggatctgtggaactttgaacatgagagtgatgattaagggtatctgatagaagaagtttctaagcagcatagccttcaatatttggcctggctgtttgtcatagcctacgcacatatctgtgagcaaagaaatgatctgaaactggaactgatatttaaaggggaaATTTAATATccaggacaattcctaatggagttgcaggagcaggacccccgccaggactactaaatggtagagtcactggtaatgtgcaagctgagcttggaaaagccataggcattcaattttcacccatgagagcggctatatgggttaggttcagcaaagccaaggatgtggggctgcaaatggcattgtgagcccaccacttgcaccag----tgtgctcaggtgtcaagatatagagtcaaaggagaatattttagagctttaagttttaccatcttccattatgagtttcagccttgtgaggacactgcattcatttcttttggcccatttattccttttggaatggaaatgtataagaaatgtcccttccactcttgtattaatattttagaagtaaataaca---tttttaaaactttac-------aggctcacagctatagagacttaccttgagtctcagatgagactttggaattttgagttgatgctggaacaacctagcac-atttgag-caact---ggaaaattatcgtattttgcagtgggagaaaaa-catgagctctgactggccaggggcaggaTATAATGATAtaaatatctaccccctgatacctcatgttaaaatctgacccccaatgttggacgtggggcctaatgggtgttgtttgcgtcatgggggccaatcttttatgaatagagag-atactgtcctctctcatgagtgaataaattgttactcttttagtttccaagagagctagttgttaaaaagagcctggcaacttcttacactctctgttcctctgttaccatgtgatctctgcacataccagctcccctttgccttct
i manLeu1.NW_012107142v1          I 11 I 211
s colAng1.NW_012115577v1             52706 1063 -   1829203 tagaggaaagatcatgtttattatgcactggccaaaaatttggaggcattctgctccctccctagggatctgtggaacttggaacctgcgagtgatgattaagggtatctgatggaagaaatttctaaatagcataacattcaagatatggcctggctgcttgtaatagcctatgcacatatgtgtgagtaaagaaatgacccaaaactggaactgatatttaatggggaaATTTAATACccaggacaattcctagtggagttgcaggagcaggacccctgccaggactactaaatggtacagccactggcaatgtgcaacctcagcctggaaaagccataggcattcagttttcacccatgagagcagctatatgggttatgttcagcaaagccataaatgtgggcctacaaatggcgttatgagcccaggacttgcaccagtcaatgtgctcaggattcaa-atatagagtcaaaggagattattttagagctttaagttttaatgtctgctatgatgagtttcagcc-tgtgaggacactgcattcatttcttttgacccatttattccttttggaatggaaatgtataaaaaatgtctcttccactgttgtattagtattttataattaaataac----tttttttaatttcat-------aggctcaaagttataagaacctaccttgagtctcagatgagactctggaattttgagttgatgctggaacaacctaacac-atttaggacaatttggagaagattattgtgttttgcaatgtgacaagaa-tgtgaactttggctgcctaggggcaggaTTCAATGATAtaaatatttatccccggatacctcatgttaaaatctgatgcccactgtggaatgtggggcctaattggtgccatttgggtcatggggaccaatcttttgtgaatagagag-atactgccctctctgtagactgaatgaattgttgctctcttattttccaagacagccagttgttaaaaagcacctgacaacttcctactctctctgttcctctgttaccatatgatctctgcacatagcagatc-------------
i colAng1.NW_012115577v1          C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I

a score=4950.000000
s hg38.chr6_GL000254v2_alt         1304678 3 +   4827813 gcc
s panTro5.chr6                    30175583 3 + 175400573 gcc
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30406214 3 + 173848474 gcc
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             60361 3 +   2037526 gcc
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74740996 3 + 122973662 gcc
i nomLeu3.chr1a                   C 0 C 0
s macFas5.chr4_KE145577_random      186897 3 +    231697 ccc
i macFas5.chr4_KE145577_random    C 0 I 208
s macNem1.NW_012012100v1            118884 3 +   1495729 gcc
i macNem1.NW_012012100v1          C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             53769 0 -   1829203 C
e manLeu1.NW_012107142v1             21887 211 -    735854 I
e chlSab2.chr17_KE148042v1_random    72611 211 -    117593 I
e cerAty1.NW_012002535v1            223524 211 -    863181 I
e rheMac8.chr4                    30563590 211 + 172585720 I

a score=4628.000000
s hg38.chr6_GL000254v2_alt         1304681 4 +   4827813 atgg
s panTro5.chr6                    30175586 4 + 175400573 atga
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30406217 4 + 173848474 atgg
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             60364 4 +   2037526 atga
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74740999 4 + 122973662 atga
i nomLeu3.chr1a                   C 0 C 0
s macNem1.NW_012012100v1            118887 4 +   1495729 atga
i macNem1.NW_012012100v1          C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             53769 0 -   1829203 C
e manLeu1.NW_012107142v1             21887 211 -    735854 I
e chlSab2.chr17_KE148042v1_random    72611 211 -    117593 I
e cerAty1.NW_012002535v1            223524 211 -    863181 I
e macFas5.chr4_KE145577_random      186900 208 +    231697 I
e rheMac8.chr4                    30563590 211 + 172585720 I

a score=6458332.000000
s hg38.chr6_GL000254v2_alt         1304685 1194 +   4827813 gtgggagcagcctgaggccctcaccaaatgctcaaacatttccagacatcagaatcccaagccacatgaaccttgtttacataaattagtcagtctctgacatttctttatagcaacacaaaatggaataagacaGCGctctcatcacaggtatgtgtctctggcagccagcccccattctcaagatatccagggtccgctcagccatgagtcctctcattaatattcta-----actcttatcacgcaagagattctaaggtttttaggagaaaccagggacaaagactaaatgttTTTGTTATACCTCAGATTACCCGCTTTTCTTTGACCACATATCTTTTATAGGAAAAGGATTATAAAAGTAAAGAGGTATTGGCGTATTATCAGAGTCtcattcagtcattcaaaattagaacagtttaccatcctctcatatgaatatgtctcccagaatgaagtcactcaggtttgcagacaccactcaaccttaccaggctccaaaaacaagaatggtctcaaggacatatggcttcactcttttaggcacccagtataattgacctaagagacaatatcttctcttgctcacagcacttttgaggagttaagctaatattgaattttcctcattatataaccctttgatttattcactt-accctcagccactattcctccttctgtccctttatatcagtcttttccagttttagaggtgacatcaggtttgtctgctgtgctgacctagactgcaggcagcaatagtattctagcatgccttccctcggtctactcttggtcatagagggtaggttatgtaggtaaggaactagtgggggccatctgactaccaggctatatagctctatttactgttaatcctgactttgccagatgaaatgaaggcatagcaccatctttgagttgcttgggaattcttatataaagatgtaaatatatagttatggtttttggcttaaagataattcctgtttctggcactttgattttcatccctattcctggtaccactgcatcacatatgaaaaaagaaatttgaggtgaagcgtagtcattattccagcatcctctccccttcagaagaattgtatgtatagtcataacagcatcgtcctgatccatcaggtaaaagagaggaagctatctagaggagtcactcttgc-gcccc------------acccatgt
s panTro5.chr6                    30175590 1195 + 175400573 gtgggagcagcctgaggccctcaccaaatgctcaaacatttccagacatcagaatcccaagccacatgaaccttgtttatataaattagtcagtctctgacatttctttatagcaacacaaaatggtataagacaGCGctctcatcacaggtatgtgtctctggcagccagcccccattctcaagatatccagggtctgctcagccatgagtcctctcattaatattcta-----actcttatcactcaagagattctaaggtttttaggagaaaccagggacaaagactaaatgttTTTGTTATACCTCAGATTACCAGCTTTTCTTTGACCACATATCTTTTATAGGAAAAGGATTATAAAAGTAAAGAGGTATTGGCGTATTATCAGAGTCtcattcagtcattcaaaattagaacagtttaccatcctcttgtatgaatatgtctccaagaatgaagtcactcaggtttgcagacaccactcaaccttaccaggctccaaaaacaagaatggtctcaaggacatatggcttcactcttttaggcgcccagtataattgacctaagagacaatatcttctcttgctcacagcacttttgaggagttaagctaatattgaattttcctcattatataaccctttgatttattcactt-accctcagccactattcctccttctgtccctttatatcagtcttttccagttttagaggtgacatcaggtttgtctgctgtgctgacctagactgcaggcagcaatagtattctagcatgccttccctcggtctactcttggtcatagagggtaggttatgtaggtaaggaactagtgggggccatctgaccaccaggctatatagctctatttactgttaatcctgactttgccagatgaaatgaaggcatagcaccatctttgagttgcttgggaattcttatataaagatgtaaatatatagttatggtttttggcttaaagataattcctgtttctggcactttgattttcatccctattcctggtaccactgcatcacatatgaaaaaagaaatttgaggtgaagcgtagtcattattccagcatcctctccccttcagaagaattgtatgtatagtcataacagcatcgtcctgatccatcaggtaaaagagaggaagctatctagaggagtcactcttgcagcccc------------acccatgt
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30406221 1207 + 173848474 gtgggagcagcctgaggccctcaccaaatgctcaaacatttccagacatcagaatcccaagccacatgaaccttgtttatataaattagtcagtctctgacatttctttatagcaacacaaaatggtataagacaGCGctctcatcacaggtatgtgtctctggcagccagcccccattctcaagatatccagggtctgctcagccatgagtcctctcattaatattcta-----actcttatcactcaagagattctaaggtttttaggagaaaccagggacaaagactaaatgttTTTGTTATACCTCAGATTACCAGCTTTTCTTTGACCACATATCTTTTATAGGAAAAGGATTATAAAAGTAAAGAGGTATTGGCGTATTATCAGAGTCtcattcagtcattcaaaattagaacagtttaccatcctctcgtatgaatatgtctccaagaatgaagtcactcaggtttgcagacaccactcaaccttaccaggctccaaaaacaagaatggtctcaaggacatatggcttcactcttttaggcacccagtataattgacctaagagacaatatcttctcttgctcacagcacttttgaggagttaagctaatattcaattttcctcattatataaccctttgatttagtcactt-accctcagccactattcctccttctgtccctttatatcagtcttttccagttttagaggtgacatcaggtttgtctgctgtgttggcctagactgcaggcagcaataatattgtagcatgccttccctcggtctactcttggtcatagagggtaggttatgtaggtaaggaactagtgggggccatctgaccaccaggctatatagctctatttactgttaatcctgactttgccagatgaaatgaaggcatagcaccatctttgacttgcttgggaattcttatataaagatgtaaatatatagttatggtttttggcttaaagataattcctgtttctggcactttgattttcatccctattcctggtaccactgcatcacatatgaaaaaagaaatttgaggtgaagcatagtcattattccagcatcctctccccttcagaagaattgtatgtatagtcataacagcatcgtcctgatccatcaggtaaaagagaggaagctatctagaggagtcactcttgcagccccttgtccacatgggtgcatgt
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             60368 1191 +   2037526 gtgggagcagcctgaggccctcaccaaatgctcaaacatttccggacatcagaatcccaagccacatgaaccttgtttatataaattagtcagtctctgacatttctttatagcaacacaaaatggtataagacagcgctctcatcacaggta--tgtctctggcagccagcccccattctcaagatatccagggtccgctcagccatgagtcctctcattaatattcta-----actcttatcactcaagagattctaaggtttttaggagaaaccagggacaaagactaaat-tttTTTTTATACCTCAGATTACCCGCTTTTCTTTGACCACATATCTTTTATAGGAAAAGGATTATAAAAGTAAAGAGGTATTGGCGTATTATCAGAGTCtcattcagtcattcaaaattagaaccgtttaccatcctctcgtatgaataagtctcccagaatgaagtcactcaggtttgcagacaccactcaaccttaccaggctccaaaaacaagaatggtctcaaggacatatggcttcactcttttaggcacccagtataattgacctaagagacaatatcttctcttgctcacagcacttttgaggagttaagctaatattgaattttcctcattatataaccctttgatttattcactt-accctcagccactattcctccttctgtccctttatatcagtcttttccagttttagaggtgacatcaggtttgtctgctgtgctgacctagactgcaggcagcaatagtattctagcatgccttccctcggtctactcttggtcatagagggtaggttatgtaggtaaggaactagtgggggccatctgtccaccaggctatatagctctatttactgttaatcctgactttgccagatgaaatgaaggcatagcaccatctttgagttgcttgggaattcttatataaagatgtaaatatatagttatggtttttggcttaaagataattcctgtttctggcactttgattttcatccctattcctggtaccactgcatcacatatgaaaaaagaaatttgaggtgaagcgtagtcattattccagcatcctctccccttcagaagaattgtatgtatagt-ataacagcatcgtcctgatccatcaggtaaaagagaggaagctatctagaggagtcactcttgcagcccc------------acccatgt
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74741003 1177 + 122973662 gtgggagcagcctgaggccctcaccaaatgctcaaacatttccagacatcagaatcccaagccacatgaaccttgtttatataaattagtcagtctctgacatttctttatagcaacacaaaatggtataagacaGCActctcatcacaggtgtgtgtctctggcagccagcccccattctcaagatatccagggtccgctcagccatgagtcctctcatcaatattcta-----actcttatcactcaagagattctaaggtttttaggagaaaccagggacaaagactaaatgttTTTGTTATACCTCAGATTACCCACTTTTCTTTTACCACATATCTTTTCTAGGAAAAGGATTACAAAAGTAAAGAGGTATTGGCTTATTATCAGAGTCtcattcagtcattcaaaattagaacagtttaccatcctctcgtatgaatatgtctcccagaatgaagtcactcaggtttgcagacaccattcaaccttaccaggctccaaaaacaagaacggtctcagggacatatggcttcactcttttaggcacccagtataattgacctaagagacaatatcttctcttgctcacagcacttttgaggaattaagctaatattgaattttcctcattacataaccctttgatttattcactt-accctcagccactattcctccttctgtccctttatatcagtcttttccagttttagaggtgacatcaggtttggctgctgtgctggcctagactgcaggcagcaatagtattctagcatgccttccctcggtctactcttggtcatagagggtaggttatgtaggtaaggagctagtgggggccatctgaccaccaggctatatagctctatttactgttaatcctgactttgccagatgaaatgtaggcgtagcaccatctttgagttgcttgggaattct------------------tatagttatggtttttggcttaaagataattcctgtttctggcactttgattttcatccctattcctggtacCACTGCATCACATATgaaaaaagaaattcgaggtgaagtgtagtcattattccagcatcttttccccttcagaagaattgtatgtatcgtcataacagcatcatcctgatccatcaggtaaaagagaggaagctatctagaggagtcactcttgcagcccc------------atccatgt
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30563801 1196 + 172585720 gtgggagcagtctgaggccctcgccaaatgctcaaacatttccagaagtcaaaattccaagccacatgaaacttgtttatataaattagtcagtgtcagacatttctttatagcaatacaaaatggaataagataGCActctcatcacaggtatgtgtctctggcagccagcccccattctcaagatatccagggtccactcagccatgagtcctctcatcaatattcta-----attcttatcactcaagagattctaaggtttttaggagaaaccacggacaaagactaaatgttTTTCTTATAACTCAGATTACCCACTTTTCTTTGACCACATATCTTTTATAGGAAAAGGATTACAAAAGTAAAGAGGTATTGGCATATTaacagagcatcattcagtcattcaaaattagaacagtctatcatcctcttgtatgaatatgtctcccagaatgaactcactcatgtttgcagacaccactcaacattacggggttccaaaaacaagagtggtctcagggacatatgacttcactcttttaggcgtccagtattattgacctaagagacaatatcttctcttcctcacagcacgttcgaggagttaagctaatattgaattttactcatttcataaccctttaatttattcacttaaccctcagccactattcctccttctgtccctttatatcaatcttttccagttttagaggtgacatcaggtttggctgctgtgctggcctagactgcaggcagcaatagtatcctagtatgtcttccctcagtctactcttggtcatagagggtaggttatgtaggtagggaactagtgggggccatctgaccaccaggctatatagctctatttagtgttaatcctgactttgccaaatgaagagaaggcatagcacaatctttgagttgcttggaaattcttacataaaggtgtaaaattatagttatggtttttggcttaaagataattcctgtttctggtacttttatttgcatccctattcctggtaccactgcatcacatatgaaaaaagaaatctgaggtgaagtgtagtcaatattccagcatcctctccccttcagaagatttgtatgtatagtcataacaccatcatcttgattcttcaggtaaaagagagggagttacctagtggagtcacacttgcagcccc------------acccatgt
i rheMac8.chr4                    I 211 C 0
s macFas5.chr4_KE145577_random      187108 1196 +    231697 gtgggagcagtctgaggccctcaccaaatgcttaaacatttccagacttcaaaatcccaagccacatgaaacttgtttatagaaattagtcagtgtcagacatttctttatagcaatacaaaatggaataagacagcactctcatcacaggtatgtgtctctggcagccagcccccattctcaaggtatccagggtccactcagccatgagtcctctcatcaatattcta-----attcttatcactcaagagattctaaggtttttaggagaaaccagggacaaagactaaatgtttttcttatAACTCAGATTACCCACTTTTCTTTGACCACATATCTTTTATAGGAAAAGGATTACAAAAGTAAAGAGGTATTGGCATATTaacagagcatcattcagtcattcaaaattagaacagtctatcatcctcttgtatgaatatgtctcccagaatgaactcactcatgtttgcagacaccactcaacattacggggttccaaaaacaagagtggtctcagggacatatgacttcactcttttaggcgtccagtattattgacctaagagacaatatcttctcttgcttacagcacgttcaaggagttaagctaatattgaattttactcatttcataaccctttaatttattcacttaaccctcagccactattcctccttctgtccctttatatcaatcttttccagttttagaggtgacatcaggtttggctgctgtgctggcctagactgcaggcagcaatagtatcctagtatgtcttccctcagtctactcttggtcatagagggtaggttatgtaggtagggaactagtgggggccatctgaccaccaggctctatagctctatttagtgttaatcctgactttgccaaatgaagagaaggcatagcacaatctttgagttgcttgggaattcttacataaaggtgtaaaattatagttatggtttttggcttaaagataattcctgtttctggtacttttatttgcatccctattcctggtaccactgcatcacatatgaaaaaagaaatctgaggtgaagtgtagtcaatattccagcatcctctccccttcagaagatttgtatgtatagtcataacaccatcatcttgattcttcaggtaaaagagagggagttacctagtggagtcactcttgcagcccc------------acccatgt
i macFas5.chr4_KE145577_random    I 208 C 0
s macNem1.NW_012012100v1            118891 1173 +   1495729 gtggaagcagcctgaggccctcactaaatgctcaaacatttccagccatcagaatcctgagccacatgaatcttgtttatataaattagtcagtctcagacatttctttacagcaacacaatatggaataagacaacgttctcaccacaggtatgtgtctctggcagccagcccccattctcaagataactaggatctgctcagccaagagtcctgtcatcagtattctaaagacactcttatcactcaagag--tctaagggttttaggagaaaccagggactaagactacatgt-------------------------tTTTCTTTGACCACATATCTTTTATAGGAAAAGGATTATAACAGTAAAGAGGTATTGCCATATTATCAGAGTCtcattcagtcatttaaaattaggccagtttatcatcctcttggatgaatatgtctcccagaatgaagtcattcagctttgcagacaccactcaatcttaccgggttccaaaaacaagaatggtctcagggacatatggcttcacccttttaggcatccagtataattgacctaagagacaatatcttctcttgcttacactacttttgaggagttaagctaatattgaatttttctcattacataaccctttgatttattcactt-accctcagccactattcctctttctgtccctttatatcagtcttttccagttttggaagtgacattaggtttgtctgctgtgctggtctagatcgcaggcagcagtagtattctagaatgtcttccctaagtctactcttgatcatagagggtaggttacatagcgaaggaactagttggtgctattgtaccaccaggctacatagctctacttactgttaatcctgactttgccagatgaaatgaaggcatagcacaatccttgagttgcttggggattcttacatacaggtgtaaaaatatagttatggtttttggcttagggataattcctgtttctggcacttttatttacatccctattcctagtaccacggcagcacatatgaaaaaagaaatttgaggtgaagtgtagtcattactccagcatcctctccccttaggaagaattgcatgtatagtcataacagcattgtcctgatccatcaggaaaaagagaggaagctacctagtggaatcacacttgcagcgcc------------acccatgt
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            223735 1196 -    863181 gtgggagcagtctgaggccctcgccaaatactcaaacatttccagaagtcaaaattccaagccacatgaaacttgtttatataagttagtcactgtcagacatttctttacagcaatacaaaatggaataagacagcactctcatcacaggtatgtgtctctggcagccagcccccattctcaagatatccagggtccactcagccatgagtcctctcatcaatattcta-----attcttatcactcaagagattctaaggtttttaggagaaaccacggacaaagactaaatgtttttcttatAACTCAGATTACCCACTTTTCTTTGACCACATATCTTTTATAGGAAAAGGATTACAAAAGTAAAGAGGTGTTGGCATATTaacagagcatcattcagtcattcaaaattaaaacagtctatcatcctcttgtatgaatatgtctcccagaatgaactcactcatgtttgcagacaccactcaacattacggtattccaaaaacaagagtggtctcagggacatatgacttcactcttttaggcattcagtattattgacctaagagacaatatcttctcttgctcacagcacgttcgaggagttaagctaatattgaattttactcatttcataaccctttaatttattcacttaaccctcagccactattcctccttctgtccctttatatcaatcttttccagttttagaggtgacatcaggtttggctgctgtgctggcctagactgcaggcagcaatagtatcctagtatgtcttccctcagtctactcttggtcatagagggtaggttatgtaggtagggaactagtgggggccatctgaccaccaggctatatagctctatttagtgttaatcctgactttgccaaatgaagagaaggcatagcacaatctttgagttgcttgggaattcttacataaaggtgtaaaattatagttacggtttttggcttaaagataattcctgtttctggtacttttatttgcatccctattcctgctaccactgcatcacatatgaaaaaagaaatctgaggtgaagtgtagtcaatattccagcatcctctccccttcagaagatttgtatgtatagtcataacaccatcatcttgatttttcaggtaaaagagagggagttacctagtggagtcactcttgcagcccc------------acccatgt
i cerAty1.NW_012002535v1          I 211 C 0
s chlSab2.chr17_KE148042v1_random    72822 1195 -    117593 gtgggagcagcctgaggccctcaacaaatgctcaaacatttccagacatcaaaatgccaacacacatgaaacttgtttatataaattagtcagtgtcagacatttctttatagcaatacaaaatggaataagacagcactctcatcacaggtatgtgtc-ctggcagccagcccccattctcaagatatccagggtccactcagtcaggagtcctctcatcaatattcta-----attcttatcactcaagagattctaaggtttttaggagaaaccatgaacaaagactaaatgttTTTCTTATAACTCAGATTACCCACTTTTCTTTGACCACATATCTTTTATAGGAAAAGGATTACAAAAGTAAAGAGGTATTGGCATATTaacagagcatcattcagtcattcaaaattagaacagtctatcatcctcttgtatgaatatgtctcccagaatgaagtcactcatgtttgcagacaccactcaactttaccgggttccaaaaacaagagtggtctcggggacatatggcttcactcttttaggcatccagtattattgacctaagagacaatatcttctcttcctcacagcacgttcgaggagttaagctaatattgaattttactcatttcataaccctttaatttattcacttaaccctcagtcactattcctccttctgtccctttatatcaatcttttccagttttagaggtgacatcaggtttggctgctgtgctggcctagactgcaggcagcaatagtatcctagcatgtcttccctcagtctactcttggtcatagagggtaggttatgtaggtagggaactagtgggggccatctgaccaccaggctatatagctctatttagtgttaatcctgactttgccaaatgaagcgaaggcatagcacaatctttgagttgcttgggaattcttacataaaggtgtaaaattatagttatggtttttggcttaaagataattcctgtttctggtacttttatttgcatccctattcctggtaccactgcatcacatatgaaaaaagaaatttgaggtgaagtgtagtcattattccagcatcctctccccttcagaagatttgtgtgtatagtcataacagcatcatcttgattcttcaggtaaaagagaaggagttacctagtggggtcacttttgcagcccc------------acccatgt
i chlSab2.chr17_KE148042v1_random I 211 C 0
s manLeu1.NW_012107142v1             22098 1196 -    735854 gtgggagcagtctaaggccctcaccaaatgctcaaacatttccagacatcaaaatcccaagccacatgaaacttgtttatagaaattagtcagtgtcagacatttctttatagcaacacaaaatggaataagacagcactctcatcacaggtatgtgtctctggcagccagcccccattctcaagatatccagggtccactcagccatgagtcctctcatcaatattcta-----attcttatcactgaagagattctaaggtttttaggagaaaccagggacaaagactaaatgttTTTCTTATAACTCAGATTACTCACTTTTCTTTGACCACATATCTTTTATAGGAAAAGGATTACAAAAGTAAAGAGGTGTTGGCATATTaacagagtatcattcagtcattcagaattagaacagtctatcatcctcttgtatgaatatgtctcccagaatgaagtcactcatgtttgcagacaccactcaaccttacggtgttctaaaaacaagagtggtctcagggacatgtggcttcactcttttaggcattcagtattatttacctaagagacaatatcttctcttcctcacagcacgttcgaggagttaagctaatattgaattttactcatttcataaccctttaatttattctcttaaccctcagccactattcctccttctgtccctttatatcaatcttttccagttttagaggtgacatcaggtttggctgctgtgctggcctagactgcaggcagcaatagtatcctagcatgtcttccctcagtctactcttggtcatagagggtaggtgatgtaggtagggaactagtgggggccatctgaccaccaggctagatagctctatttagtgttaatcctgactttgccaaatgaagcaaaggcatagcacaatctttgagttacttgggaattcttacataaaggtgtaaaattatacttatggtttttggcttaaagataattcctgtttctggtacttttatttgcatccctattcctggtaccactgcatcacatatgaaaaaagaaatttgaggtgaAGTGTAGTCATTATTCCAGCATCCTCTCCCCTTCAGAAGAGTTGTATGTATAGTCGTAACAGCATCATCTTGATTCTTCAGGTAAAAGAGAGGGAGTTACCTAGTGGAATCACTCTTGCAGCCCC------------ACCCATGT
i manLeu1.NW_012107142v1          I 211 I 3331
s colAng1.NW_012115577v1             53769 1190 -   1829203 ---ggagcagcctgaggccctcactaaatgctcaaacatttccagacatcagaatcctgagccacatgaaccttgtttacataaattagtcagtctcagatatttatttacagcaacacaaaatggaataagacaaccttctcatcacaggtatgtgtctctggcagccagtccccattctcaagatatccaggatccactcagtcaagagtcttctcatcagtactctaaagacactcttatcactcaagag--tctaaggtttttaggagaaaccagggacaaagattacatgttTTTGTTATACCT-AGAATATGTGCTTTTCTTTGACCACATATCTTTGATAGGAGAGGGATTATAACAGTAAAGAGGTATTGGCATATTATCAGAGTCTCACTcagtcattcagaattaggccagtttatcatccttttgtatgaatatgtctcccagaatgaagtcactcagttttgcagacaacaatc----ttaccaggttccaaaaacaagaacggtttcagggacatatggcttcacctttttaggcatccagtataattgacctaagagacaatgtcttctcttgctcacaccacttttgaggagttaagctaatattgaattttcctcactatataaccctttgatttattcactt-acccccagccactatccctccttctgtccctttatatcagtctcttccagttttggaagtgacattaggtttggctgctgtgctggcctagactgcaggcagcaatagtattctagcatgtcttccctcagtctactcttgatcatagagagtaggttacataggttaggaaccagtgcaggccatctgaccactgggctgcatagctctacttacagttaatcctgactttgtcagatgaaatgaaggcacagcacaatccttgagttgcttgggaattcttatatacaggtataaaaatatagttatggttttttgcttagggatagttcctgtttctgacacttttatttccatccctattcctggtgccactgcatcacctatgaaaaaagaaatctgaagtgaatggtagtcattattccagcatcctctctccttaggaagaattgtgtgtatagtaataacagcatcgtcctGATTCTTGAGGACAAAGAGTGGAAGCTACCTAGAGGAGTCAGTCTTGCAGCCCC------------ACCCATGT
i colAng1.NW_012115577v1          C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I

a score=374721.000000
s hg38.chr6_GL000254v2_alt         1305879 85 +   4827813 ggacagtgagcacattcatgaagatgtaaa----agccagtccttcatgtttatattgcccaacaactatattgccagtttttagacaa
s panTro5.chr6                    30176785 85 + 175400573 ggacagtgagcacattcatgaagatgtaaa----agccagtccttcatgtttatattgcccaacaactatattgccagtttttagacaa
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30407428 85 + 173848474 ggacagtgagcacattcatgaagatgtaaa----agccagtccttcatgtttatattgcccaacaactatattgccagtttttagacaa
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             61559 85 +   2037526 ggacagtgagcacattcatgaagatgtaaa----agccagtccttcatgtttatattgcccaacaactatattgccagtttttagacaa
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74742180 85 + 122973662 ggacagtgagcacattcatgaagatgtaaa----agccagtccttcatgtttatattgcccaacaactatattgccagtttttagacaa
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30564997 85 + 172585720 tgacagtgagcacattcatggaaatataaa----agctagtccttcatgtttatattgctcaacaattagattcacagtttttagacaa
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      188304 85 +    231697 tgacagtgagcacattcatggaaatataaa----agccagtccttcatgtttatattgctcaacaattagattcacagtttttagacaa
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1            120064 85 +   1495729 tgacagtgagcgcattcatggagatataaa----agccagtccttcatgtttatattgctcaaaaattatattggcagtttttagacaa
i macNem1.NW_012012100v1          C 0 C 0
s cerAty1.NW_012002535v1            224931 85 -    863181 tgacagtgagcacattcatggaaatataaa----agccagtccttcatgtttatattgctcaacaattagattcacagtttttagacaa
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    74017 85 -    117593 tgacagtgagcatgttcatggagatacaaa----agccagtccttcatgtttatattgcccaacaattagattcacagtttttagacaa
i chlSab2.chr17_KE148042v1_random C 0 C 0
s colAng1.NW_012115577v1             54959 88 -   1829203 TGACAGTGAGCACATTCA-AAAGATATAAAAGCCAGCCAGTCCTTCATGTTTATATTGCCCAACAATTATATTGACAGGTTTTAGACAA
i colAng1.NW_012115577v1          C 0 I 21782
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e manLeu1.NW_012107142v1             23294 3331 -    735854 I

a score=2080376.000000
s hg38.chr6_GL000254v2_alt         1305964 552 +   4827813 acaatgcttcaactgaccatttcaattttctatcaaagttttcttctgaggaggacatctccctgtgcattgttagccatttgaggctgtaaagtgtgttttcttgcgtaaagaaatgggactcagcagtccacattggtgcaatctctttttttctggtgatttcatagcccttgaagcattgacctcttcccctggttgagcatagcccaatccagagtcagtgactttcctgtcaagatcccttggcagctcctttggggttgctgccatcagtctggcttgccagccatgtatgatcaaagccttcccactagagaa----tcacatagccatctgctgcctctgtctgttttcttgaccaacagTCAAAACAGAGATGATaagaaatgagataaattaccaaaattgtgaacaaaagagagattatcactagtgaccctttagaaattcaaaagcattataagtgaagactctgaaaaacctgaagtcaataagttagaccacttagataaaatggacagattcatacaaagatagaaattgccaaaactg
s panTro5.chr6                    30176870 552 + 175400573 acaatgcttcaactgaccatttcaattttctatcaaagttttcttctgaggaggacatctccctgtgcattgttagccatttgaggctgtaaagtgtgttttcttgcataaagaaatgggactcagcagtccacattggtgcaatctctttttttctggtgatttcatagcccttgaagcattgacctcttcccctggttgagcatagcccaatccagagtcagtgactttcctgtcaagatcccttggcagctcctttggggttgctggcatcactctggcttgccagccatgtatgatcaaagccttcccactagagaa----tcacatagccatctgctgcctctgtctgttttcttgaccaacagTCAAAACAGAGATGATaagaaatgagataaattaccaaaattgtgaacaaaagagagattatcactagtgaccctttagaaattcaaaagcattataagtgaagactctgaaaaacctgaagtcaataagttagaccacttagataaaatggacagattcatacaaagatagaaattgccaaaactg
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30407513 551 + 173848474 acaatgcttcaactgaccatttcaattttctatcaaagttttcttctgaggaggacatctccctgtgcattgttagccatttgaggctgtaaagtgtgttttcttgcgtaaagaaatgggactcagcagtccacattggtgcaatctctttttttctggtgatttcatagcccttgaagcattgacctcttcccctggttgagcatag-ccaatccagagtcagtgactttcctgtcaagatccgttggcagctcctttggggttgctggcatcactctggcttgccagccatgtatgatcaaagccttcccactagagaa----tcacatagccatctgctgcctctgtctgttttcttgaccaacagTCAAAACAGAGATGATaagaaatgagataaattaccaaaattgtgaacaaaagagagattatcactagtgaccctttagaaattcaaaagcattataagtgaagactctgaaaaacctgaagtcaataagttagactacttagataaaatggacagattcatacaaagatagaaattgccaaaagtg
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             61644 552 +   2037526 acaatgcttcaactgaccatttcaattttctatcaaagttttcttctgaggaggacatctccctgtgcattgttggccatttgaggctgtaaagtgtgttttcttgcgtaaagaaatgggactcagcagtccacattggtgcaatctctttttttctggtgatttcatagcccttgaagcattgacctcttcccctggttgagcatagaccaatccagagtcagtgactttcctgtcaagatcccttggcagctcctttggggttgctggcatcagtctggcttgcaagccatgtatgatcaaagccttcccactagagaa----tcacatagccatctgctgcctctgtctgttttcttgaccaacagTCAAAACAGAGATGATaagaaatgagataaattaccaaaattgtgaacaaaagagagattatcactggtgaccctttagaaattcaaaagcattataagtgaagactctgaaaaacctgaagtcaataagttagaccacttagataaaatggacagattcatacaaagatagaaattgccaaaactg
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74742265 552 + 122973662 acaatgcttcaactgaccatttcaattttctatcaaagttttcttctgaggagatcatctccctgtgcattgttggcaatttaaggctgtaaagtgtgttttcttgagtaaggaaatgggactcagcagtccacattggtgcaatctctttttttctggttatttcatagcccgtgaagcattgacctcttcccctggttgagcatagcccaatccagagtcagtgactttcctgtcaagatccattggcagctcctttggggttgctggcatcagtctggcttgccagctatgtatgatcgaagccttcccactagagaa----tcacatagccatctgctgcctctgtctgttttCTtgaccaacagtcaaaacagagatgatatgaaatgagataaattaccaaaattgtgaacaaaagagagattatcactggtgaccctttagaaattaaaaagcattataagtgaatactctgaaaaacctgaagtcaataagttagaccacttagataaaacggacagattcatacaaagatagaaattgccaaaactg
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30565082 554 + 172585720 acaatgcttcaattgactgtttcaattttctatcacagttttcttctgaggaggacatgtccctgtgcattgttggttgtttgaggctgtaaagtgtgttttcttgcgtaaagaaatgggactcagcagtccaaattcgtgcaatctctttttttctggttcttttatagcccttgaagcactgacatctacccctgattgagcatagcccagtccagagtcagtgactttcctgtcaagatccactggcagttcctctggggttgctggcaccagtctggcttgccagctatgtatgatcaaagccttcccactagagaatctgtcacagagccatctgctgcctctgtctgttttcttgaccaacagTCAAAACACAGATTATgagaaatgagataaattagcaaaattgtgaacaaaagagagattatcactagtgaccctttagaaattaaaaagcatg--aagtcaatactctgaaaaacctgaagtcaataaattagaccacttagataaaatggacagattcatacaaagatagaaattgccaaaactg
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      188389 555 +    231697 acaatgcttcaattgactgtttcaattttctatcacagttttcttctgaggaggacatgtccctgtgcattgttggttgtttgaggctgtaaagtgtgttttcttgcataaagaaatgggactcagcagtccaaattggtgcaatctctttttttctggttcttttatagcccttgaagcactgacatctacccctgattgagcattgtccaatccagagtcagtgactttcctgtcaagatccactggcagttcctttggggttgctggcaccagtctggcttgccagctatgtatgatcaaagccttcccactagagaatctgtcacagagccatctgctgcctctgtctgttttcttgaccaacagTCAAAACAGAGATTATgagaaatgagataaattagcaaaattgtgaacaaaagagagattatcactagtgaccctttagaaattaaaaagcattg-aagtcaatactctgaaaaacctgaagtcaataaattagaccacttagataaaatggacagattcatacaaagatagaaattgcgaaaactg
i macFas5.chr4_KE145577_random    C 0 C 0
s macNem1.NW_012012100v1            120149 555 +   1495729 tcaatgtttcaattgaccatttcaattttctatcaaagttttctccttaggaggatatctccctgtgcattgttgtctgtttgaggctgt-aagtgtgtttttttgtgtaaagaaatgtaacatggcagtccaaattggtgcaatctcttcttttctttttcttttatagcccttgaagcattgacatctaccccagattgagcattgcccaatccagagtcagtgactttcctgtcaagatccattggcagttcctttggggttgctggcaccagtctggcttgccagctgtacaagatcaaagccttcccactagagaatctgtcacagagccatctgctgcctctgtctgttttcttgaccaacagTCAAAATAGAGATTATgagaaatgagataaattaccaaaattgtgaacaaaagagagattatcactaatgacccttaggaagttaaaaagcattataagtgaatagtctgaaaaatctggagccaacgagttagaccatttagatagaatggacagattcatacaaagatagaaattgccaaaactg
i macNem1.NW_012012100v1          C 0 I 7855
s cerAty1.NW_012002535v1            225016 555 -    863181 acaatgcttcaattgactgtttcaattttctatcacagttttcttctgaggaggacatgtccctgtgcattgttggttgtttgaggctgtaaagtgtgttttcttgcataaagaaatgggactcagcagtccaaattggtgcaatctctttttttctggttcttttatagcccctgaagcactgacatctacccctgattgagcatagtccaatccagagtcagtgactttcctgtcaagatccattggcagttcctttggggttgctggcaccagtctggcttgccagctacgtatgatcaaagccttccaactagagaatctgtcacagagccatctgctgcctctgtctgttttCTtgaccaacagtcaaaacagagattatgagaagtgagataaattaccaaaattgtgaacaaaagagagattatcactagtgaccctttagaaattaaaaagcattg-aagtcaatactctgaaaaacctgaagtcaataaattagaccacttagataaaatggacagattcatacaaagatagaaattgccaaaactg
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    74102 550 -    117593 ataatgcttcaattaactgtttcaattttctatcgaagttttcttctgaggaggacatgtccctgtacattgttggttgtttgaggctgtaaagtgtgttttcttgcctaaagaaatgggactcagcagtccaaattggtgcaatctctttttttctggttcttttatagcccttgaagcactgacatctacccc-gattgagcattgtccaatccagagtcagtgactttcctgtcaagatccactggcagttcctttggggttgctggcatcagtctggcttgccagctatgtatgatcaaagccttcccactagagaa----tcacagagccgtctgctgcctctgtctgttttcttgaccaacagTCAAAACAGAGATTATgagaaatgagataaattaccaaaattgtgaacaaaagagagattatcactagtgaccctttagaagttaaaaagcattg-aagtgaatactctgaaaaacctgaagtcaataaattagaccacttagataaaatggacagattcatacaaagatagaaattgccaaaactg
i chlSab2.chr17_KE148042v1_random C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             55047 21782 -   1829203 I
e manLeu1.NW_012107142v1             23294 3331 -    735854 I

a score=2621214.000000
s hg38.chr6_GL000254v2_alt         1306516 858 +   4827813 actcaaaaataactagaaaacctgaaataaggaaaaacaaaaaataataatgtattgctgttttatctggcctaaaaagcccatttgtcagccttcagtcctttggcctaagtttagctcaaataaggactgtatatgccaagctttaattctctatgtgaatgataaaaccccatcttcacaagaggagatgggttatgctgtttgctggattagtgaattgagccccgtgttcccccttaaagagaaatataaagagcatagtaaagagccctcacccagtgaaaagccctgggatcccctaacacgcttgccctacaccctatacatctcacaaagtagaggacagggaga-tcagggggcaaaaggaaggtcagaggaaaaggatttgggaggtcatgaaggagctaaacccaatgctcccttaaatccttatccaaacttgaggaaagaattagaacactgtaagGAAGgacaaacctgataaaaacaagcaatggggaaaggattcccgatttaataaatggtgttgggaaaactggctagccatatgcagaaaactgaaactgga-ccccctccttacaccttatacaaaaatcaactcaagatggattaaagacttaaacataagacctaaaactgtaaaaaccctagaagaaaacctaggcaataccattcaggacctaggcatgggcgaagacttcatgactaaaacacaaaaagcaatggcaacgaaagccagaattgactaatgggatctaattaaactcaagagcttctgcacagcaaaataaactatcatcagagtgaacaggccacctacggaatgggagaaaatttttgcaatctgtccatctg
s panTro5.chr6                    30177422 858 + 175400573 actcaaaaataactagaaaacctgaaataaggaaaaacaaaaattaataatgtattgctgttttatctggcctaaaaagcccatttgtcagccttcagtcctttggcctaagtttagctcaaataaggactgtatatgccaagctttaattctctatgtgaatgataaaaccccatcttcacaagaggagatgggttatgctgtttgttggattagtgaagtgagccccgtgttccccattaaagagaaataaaaagagcatagtaaagagccctcacccagtgaaaagctctgggatcccctaacacgcttgccctataccctatacatctcacaaagtagaggacagggaga-tcagggggcaaaaggaaggtcggaggaaaaggatttgggaggtcatgaaggagctaaacccaatgctcccttaaatccttatccaaacttgaggaaagaattagaacaatgtaagGAAGgacaaacctgataaaaacaagcaatggggaaaggattccctatttaataaatggtgttgggaaaactggctagccatatgcagaaaactgaaactgga-ccccctccttacaccttatacaaaaatcaactcaagatggattaaagacttaaacataagacccaaaactgtaaaaaccctagaagaaaacctaggcaataccattcaggacctaggcatgggcaaagacttcatgactaaaacacaaaaagcaagggcaacgaaagccagaattgactaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactatcatcagagtgaacaggccacctacggaatgggagaaaatttttgcaatctgtccatctg
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30408064 858 + 173848474 actcaaaaataactagaaaacctgaaataaggaaaaacaaaaattaataatgtattgctgttttatctggcctaaaaagcccatttgtcagccttcagtcctttggcctaagtttagctcaaataaggactgtatatgccaagctttaattctgtatgtgaatgataaaaccccatcttcacaagaggagatgggttatgctgtttgttggattagtgaattgagccccgtgttccccattaaagagaaataaaaagagcatagtaaagagccctcacccagtgaaaagccctgggatcccctaacacgcttgccctacaccctatacatctcacaaagtagaggacagggaga-tcagggggcaaaaggaaggtcggaggaaaaggatttgggaggtcatgaaggagctaaacccaatgctcccttaaatccttatccaaacttgaggaaagaattagaacaatgtaagGAAGgacaaacctgataaaaacaagcaatggggaaaggattccctatttaataaatggtgttgggaaaactggctagccatatgccgaaaactgaaactgga-ccccctccttacaccttatacaaaaatcaactcaagatggattaaagacttaaacataagacctaaaactgtaaaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaaatacttcatgactaaaacacaaaaagcaatggcaacgaaagccagaattgactaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactatcatcagagtgaacaggccacctacggaatgggagaaaatttttgcaatctgtccatctg
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             62196 856 +   2037526 actcaaaaataactagaaaacctgaaataaggaaaaacaaaaaataataatgtattgctgttttatctggcctaaaaagcccatttgtcagctttcagtcctttggcctaagtttagctcaaataaggactgtatatgccaagctttaattctctatgtgaatgataaaaccccatcttcacaagaggatatgggttatgctgtttgttggattagtgaattgagccccgtgttcccc-ttaaggagaaata-aaagagcatagtaaagagccctcacccagtgaaaagccctgggatcccctaacacccttgccctacaccctatacatctcacaaagtagaggacagggaga-tcagggggcaaaaggaaggtcggaggaaaaggatttgggaggtcatgaaggagctaaacccaatgctcccttaaatccttatccaaacttgaggaaagaattagaacaatgtaagGAAGgacaaacctgataaaaacaagcaatggggaaaggattccctatttaataaatggtgttgggaaaactggctagccatatgcagaaaactgaaactgga-ccccctccttataccttatacaaaaatcaactcaagatggattaaagacttaaacataagacctaaaactgtaaaaaccctagaagaaaacctaggcaataccattcaggacctaggcatgggcaaagacttcatgactaaaacacaaaaagcaatggcaacgaaagccagaattgactaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactatcatcagagtgaacaggccacctacggaatgggagaaaatttttgcaatctgtccatctg
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74742817 850 + 122973662 actcaaaaataactagaaaacctgaaataaggaaaaacaaaaaataataatgtattgctgttttatctggcctaaaaagcccattcgtcagccttcagtcctttggcctaagtttagctcaaataaggactgtatatgccaag-tttaattctctatgtgaatgataaaaccccatcttcacaagaggcgatgggttatgctgtttgttggattagtgaattgacccccatgttcccccttgaagagaaataaaaagagcaaagtaaagagccctcacccagtgaaaagccctgggattccctaacacgcttgccctacaccctatacatctcacaaagtagaggacagggaga-tc-gggggcaaaaggaaggtcggaggaaaaggatttgggagatcatgaaggagctaaacccaat-ctcccttaaatccttatgcaaa-ttgaggaaagaattagaacaatgt----aaggacaaacctgataaaaacaagcaatggggaaaggattccctatttaatcaatggtgttgggaaaactggctagccatatgcagaaaactgaaactgga-ccccctccctacaccttatacaaaaatcaactcaagatggattaaagacttaaacataagacctaaaactgtaaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaagacttcatgactaaaacacaaaaagcaatggcaacaaaaaccagaattgactaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactatcatcagagtgaacaggccacctacagaatgggagaaaatttttgcaatctgtccatctg
i nomLeu3.chr1a                   C 0 M 1091
s rheMac8.chr4                    30565636 856 + 172585720 actcaaaaataactagaaagcctgaaataaggaaaaacaaaaaataataaagtattgctgttttacctggcctaaaaagcccattcgtcaaccttcagtcctttggcctaagtttagcttaaataaggactgtgtatgctaagctttaattctctatgtgaatgataaa-acccatcttctcaagaggagatgggttatgctgtttgttggaagagtgaattgattcccgttttcccccttgaagagaaataaaaagagcatagtaaagagctctcacccagtgaaaagccctgggatcccctaatacatttgccctccaccctatacatctcacaaagtagaggacagggaga-tc-gggggcaaaaagaagagtggaggaaaaggatttcggagataatgaaggagctaaacccaatgctcccttaaatccttatccaaacttgaggaaagaattagaacaatgtaag-aaggacaaacctgacaaaagcaagcaatggggaaaggattccctatttaataaatggtattgggaaaactggctagccaaatgcagaaaactgaaactggagccccctccatacatcttatacaaaaatcaactcaagatggattaaagacttaaacataagacctaaaagcattaaaaccctagaagaaaacctaggcaataccattcaggacataggcacgggcaaagacttcatgactaaaacacaaaaagcaatggtaacaaaagccaaaattgacaaatggaatctaattaaactaaagagcttctgcacagcaaaagaaactatcataagagtgaacaagccacctatagaatgggagaaaatttttgcaatctgtccatctg
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      188944 857 +    231697 actcaaaaataactagaaagcctgaaataaggaaaaacaaaaaataataaagtattgctgttttacctggcctaaaaagcccatccgtcaaccttcagtcctttggcctaagtttagctcaaataaggactgcgtatgccaagctttaattctctatgtgaatgataaatccccatcttctcaagaggagatgggttatgctgtttgttggaagagtgaattgattcccgttttcccccttgaagagaaataaaaagagcatagtaaagagctctcacccagtgaaaagccctgggatcccctaatacatttgccctccaccctatacatctcacaaagtagaggacagggaga-tc-aggggcaaaaggaagagtggaggaaaaggatttcggagataatgaaggagctaaacccaatgctcccttaaatccttatccaaacttgaggaaagaattagaacaatgtaag-aaggacaaacctgacaaaagcaagcaatggggaaaggattccctatttaataaatggtattgggaaaattggctagccaaatgcagaaaactgaaactagagccccctccgtacaccttatacaaaaatcaactcaagatggattaaagacttaaacataagacctaaaagcataaaaaccctagaagaaaacctaggcaataccattcaggacataagcataggaaaagacttcatgactaaaacacaaaaagcaatggtaacaaaagccaaaattgacaaatggaatctaattaaactaaagagcttctgcacagcaaaagaaactatcatcagagtgaacaggcaacctacagaatgggagaaaatttttgcgatctgtccatctg
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            225571 857 -    863181 actcaaaaataactagaaagcctgaaataaggaaaaacaaaaaataataaagtattgctgttttacctggcctaaaaagcccatttgtcaaccttcagtcctttggcctaagtttagctcaaataaggactgtgtatgctaagctttaattctctatgtaaatgataaaaccccatcttctcaagaggagatgggttatgctgtttgttgaaatagtgaattgatccccgttttcccccttgaagagaaataaaaagagcatagtaaagagctctcacccagtgaaaagccctgggatcccctaatacatttgccctccaccctatacatctcacaaagtagaggacagggaga-tc-gggggcaaaaggaagagtggaggaaaaggatttcggagataatgaagcagctaaacccaaggctcccttaaatccttatccaaacttgaggaaagaattagaacaatataag-aaggacaaacctgacaaaagcaagcaatggggaaaggattccctatttaataaatggtgttggggaaattggctagccaaatgcagaaaactgaaactggaaccccctccatacaccttatacaaaaatcaactcaagatggattaaagacttaaacataagacctaaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggcacaggaaaagacttcatgactaaaacacaaaaagcaatggtaacaaaagccaaaattgacaaatggaatctaattaaactaaagagcttctgcatagcaaaagaaactatcatcagagtgaacaagtcacctacagaatgggagaaaatttttgcaatctgtccatgtg
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    74652 858 -    117593 actcaaaaataactagaaagcctgaaataaggaaaaacaaaaaataataaagtattgctgttttacctggccaaaaaagcccattcgtcaaccttcagtcctttggcctaagtttagctcaaataaggactgtgtatgccaagctttcattctctatgtcaatgataaaaccccatcttctcaagaggagatgggttatgctgtttgttggaagagtgaattgacccccattttcccccttgaagagaaataaaaagagcatagtaaaaagctctcacccagtgaaaagccctgggatcccctaatacgtttgccctccaccctatacatctcacgaagtagaggacagggagactg-gggggcaaaaggaagagtagaggaaaaggatttcggagataatgaaggagttaaacccaatgctgccttaaatccttatccaaacttgaggaaagaattagaacaatgtaag-aaggacaaacctgacaaaaacaagcaatgggaaaaggattccctatttaataaatggtgttgggaaaattggctagccaaatgcagaaaactgaaactggagccccctctgtacaccttatacaaaaatcaactcaagatggattaaagacttaagcataagacctaaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaaaacttcatgactaaaacacaaaaagcaacggtaacaaaagccaaaattggcaaatagaatctaatcaaactaaagagcttctgcacagcaaaagaaactatcatcagagtgaacaggcaacctacagaatgtgagaaaatttttgcaatctgtccatctg
i chlSab2.chr17_KE148042v1_random C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             55047 21782 -   1829203 I
e manLeu1.NW_012107142v1             23294 3331 -    735854 I
e macNem1.NW_012012100v1            120704 7855 +   1495729 I

a score=564316.000000
s hg38.chr6_GL000254v2_alt         1307374 239 +   4827813 acaaagggctaatatccagaatctacaaagaacttaatttacatgaaaaaaa--caaacaactccatc-aaaaagtgggcgacggatatgaaaagacacttctcaaaagaagacatttatgtagtcaacaaacatatgaaaaaaggcccatagtcacttatcattagagaaatgcaaatcaaaaccacaatgagataccatctcacaccaattagaatggcgatcattaaaaagtcaggaaa
s panTro5.chr6                    30178280 239 + 175400573 acaaagggctaatatccagaatctacaaagaacttaatttacatgaaaaaaa--caaacaactccatc-aaaaagtgggcaacggatatgaaaagacacttctcaaaagaagacatttatgtagtcaacaaacatatgaaaaaaggcccatagtcacttatcattagagaaatgcaaatcaaaaccacaatgagatactatctcacaccaattagaatggcgatcattaaaaagtcaggaaa
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30408922 238 + 173848474 acaaagggctaatatccagaatctacaaagaacttaatttacatg-aaaaaa--caaacaactccatc-aaaaagtgggcaacagatatgaaaagacacttctcaaaagaagacatttatgtagtcaacaaacatatgaaaaaaggcccatagtcacttatcattagagaaatgcaaatcaaaaccacaatgagataccatctcacaccaattagaatggcaatcattaaaaagtcaggaaa
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             63052 240 +   2037526 acaaagggctaatatccagaatctacaaagaacttaatttacatgaaaaaaa--caaacaactccatcaaaaaagtgggcgacagatatgaaaagacacttctcaaaagaagacatttatgtagtcaacaaacatatgaaaaaaggcccatagtcacttatcattagagaaatgcaaatcaaaaccacaatgagataccatctcacaccaattagaatggcgatcattaaaaagtcaggaaa
i gorGor5.CYUI01015528v1          C 0 C 0
s rheMac8.chr4                    30566492 238 + 172585720 acaaagggctaatatccagaatctacaacaaacttaatttacttgaaaaaaaa-caaacaactccatc-aaaaagtggacgaaggatatgaaaagacacttctcaaaagaagacatttatgtagtcaacaaacttatgaaaaaaagctcatagtcatttatcattagagaaatgcaaatcaaagc--caatgagataccatctcactccagttagaatggcaatcattaaaaaagcaggaaa
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      189801 241 +    231697 acaaagggctaatatccagaatctacaacaaacttaatttacatgaaaaaaaaccaaacaactccatc-aaaaagtggacgaaggatatgaaaagacacttctcaaaagaagacatttatgcagtcaacaaacatatgaaaaaaagctcatagtcatttatcattagagaaatgcaaatcaaaaccacaatgagataccatctcactccagttagaatggcaatcattaaaaaagcaggaaa
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            226428 241 -    863181 acaaagggctaatatccagaatctacaacaaacttaatttacatgaaaaaaaaacaaacaactccatc-aaaaagaggacgaaggatatgaaaagatacttctcaaaagaagacatttatgcagtgaacaaacatatgaaaaaaagctcatagtcatttatcattagagaaatgcaaatcaaaaccacaatgagataccatctcactccagttagaatggcaatcattaaaaaagcaggaaa
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    75510 241 -    117593 acaaagggctaatatccagaatctacaacaaacttaatttacatgaaaaaaaaccaaacaactccatc-aaaaagtggacgaaagatatgaaaagacacttctcaaaagaagacatttatgtagtcaacaaacatatgaaaaaaagctcatagtaatttatcattagagaaatgcaaatcaaaaccacaatgagataccatctcactccagttagaatggcaatcattaaaaaagcaggaaa
i chlSab2.chr17_KE148042v1_random C 0 I 379
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             55047 21782 -   1829203 I
e manLeu1.NW_012107142v1             23294 3331 -    735854 I
e macNem1.NW_012012100v1            120704 7855 +   1495729 I
e nomLeu3.chr1a                   74743667 1091 + 122973662 M

a score=1144564.000000
s hg38.chr6_GL000254v2_alt         1307613 468 +   4827813 caacagatgctggagaggatgtggagaaataggaacgcttttacactgttggtgggagtgtaaattagttcaaccatcgtggaagataatgtggcaattcctcaaggatctagaaccagaaataccatttgacccagcaatcccactactggatatatacccaaaggattataaacattttactataaagatacatacacacatatgtttattgcggcactgttcacaatagcaaagacttggaaccaatccaaatgctcatcaatgatagactgaataaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcaggaaaccatcagctacg-------------tgttctctgggtctctcagagaaagacccacaagaacagaaaaccaaacgctgcatgttctcactca--
s panTro5.chr6                    30178519 467 + 175400573 caacagatgctggagaggatgtggagaaataggaacgcttttacactgttggtgggagtgtaaattagttcaaccatcgtggaagataatgtggcaattcctcaaggatctagaaccagaaataccatttgacccagcaatcccactactgga-atatacccaaaggattataaacattttactataaagatacatacacacatatgtttattgcggcactgttcacaatagcaaagacttggaaccaatccaaatgcccatcaatgatagactgaataaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcaggaaaccatcagctacg-------------tgttctctgggtctctcagagaaagacccacaagaacagaaaaccaaacgctgcatgttctcactca--
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30409160 468 + 173848474 caacagatgctggagaggatgtggagaaataggaacgcttttacactgttggtgggagtgtaaattagttcaaccatcgtggaagataatgtggcaattcctcaaggatctagaaccagaaataccatttgacccagcaatcccactactggatatgtacccaaaggattataaacattttactataaagatacatacacacatatgtttattgcggcactgttcacaatagcaaagacttggaaccaatccaaatgcccatcaatgatagactgaataaagaaaatgtggcacatatacaccacggaatactatgcaaccataaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcaggaaaccatcagctacg-------------tgttctctgggtctctcagaaaaagacccacaagaacagaaaaccaaacgctgcatgttctcactca--
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             63292 468 +   2037526 caacagatgctggagaggatgtggagaaataggaaggcttttacactgttggtgggagtgtaaattagttcaaccatcgtggaagataatgtggcaattcctcaaggatctagaaccagaaataccatttgacccagcaatcccactactggatatatacccaaaggattataaacattttactatacagatacatacacacatatgtttattgcggcactgttcacaatagcaaagacttggaaccaatccaaatgcccatcaatgatagactgaataaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaatgatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcaggaaaccatcagctacg-------------tgttctctgggtctctcagacaaagacccacaagaacagaaaaccaaacgctgcatgttctcactca--
i gorGor5.CYUI01015528v1          C 0 C 0
s rheMac8.chr4                    30566730 470 + 172585720 caacagatgctggagagggtgtggagaaataggaacgcttttacactgttggtgggagtgtaaattagttcaaccattgtggaagataatgtggcaattcctcaaggatctagaaccagaaataccatttgacccagcaatcccactactgagtatatacccaaaggattataaacattttactataaagatacatgcacacgtatgtttattgcaacactgttcacaatagcaaagacttggaaccaatctaaatgcccgtcaatgatagattagataaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaggaagagttcatgtccattgcagggacatggatgaagctggaaactatcattctcaggaaaccctcagctatg-------------tgttctcagggtctctcagagagagacccacaagaacagaaaaccaaatgctgcacgttctcattcata
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      190042 483 +    231697 caacagatgctggagagggtgtggagaaataggaacgcttttacactgttggtgggagtgtaaattagttcaaccattgtggaagataatgtggcaattcctcaaggatctagaaccagaaataccatttgacccagcaatcccactactgagtatatacccaaaggattataaacattttactataaagatacacgtacatgtatgtttattgcaacactgttcacaatagcaaagacttggaaccaatccaaatgcccatcaatgatagactggataaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaggaagagttcatgtccattgcagggacatggatgaagctggaaactatcattctcaggaaacCCTCAGCTATGTGTTCTCAGGGTCTGTTCTCAGGGTCTCTCAGAGAGAGACCcacaagaacagaaaaccaaatgctgcacgttctcattcata
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            226669 470 -    863181 caacagatgctggagagggtgtggagaaataggaacgcttttacactgttggtgggagtgtaaattagttcaaccattgtggaagataatgtggcaattcctcaaggatctagaactagaaataccatttgacccagcaatcccactactgagtgtatacccaaaggattataaacattttactataaagatacatgcacacgtgtgtttattgcaacactgttcacaatagtaaagacttggaaccaatctaaatgcccatcaatgatagattagataaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaggaagagttcatgtccattgcagggacatggatgaagctggaaaccatcactctcaggaaaccctcagctatg-------------tgttctcagggtctctcagagagagacccacaaaaacagaaaaccaaacgccgcacgttctcactcata
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    76130 468 -    117593 caacagatgctggagagggtgtggagaaataggaacgcttttacactgttggtgggagtgtaaattagttcaaccattgtagaagataatgtggcaattcctcaaggatctagaaccagaaataccatttgacccagcaatcctactactgagtagatacacaaaggattataaacattttactataaagatacatgcacacgtatgtttattgcaacactgttcacaatagcaaagacttggaaccaatccaaatgcccatcaatgatagactggataaagaaaatgtggcacatatacaccatggaatactatgcaaccataaaaaggaagagttcatgtcctttgcagggacgtggatgaagctggaaaccatcattctcaggaaaccttcagctg---------------tgttctcagggtctctcagagagagacccacaagaacagaaaaccaaacgccgcacattcttactcata
i chlSab2.chr17_KE148042v1_random I 379 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             55047 21782 -   1829203 I
e manLeu1.NW_012107142v1             23294 3331 -    735854 I
e macNem1.NW_012012100v1            120704 7855 +   1495729 I
e nomLeu3.chr1a                   74743667 1091 + 122973662 M

a score=3383791.000000
s hg38.chr6_GL000254v2_alt         1308081 1105 +   4827813 aatgggagttgaacaatgagaacacatggacacagggaggggaacatcacacactggggcctgtctgagggtagggggc-taggggaggcatagcat-----------------------------taggag-aaatacctaatgtagatgatgggttgatgggtgcagcaaaccaccatggcacatgtatacctatgtaacaaacctgcatgttctgcacatgtatcccagagtttaaagtataataatgataataaTAATaaattggatttgtaagtgtgcctttaacaagtactgaggttaggaattttaaaaaggaaatgaggccactctcggaagatcccctcagtttagcagaacagctagatcaatttttagaacctaatttttatacttgggctgagataattcaatcatgaatattctgtttactgggaaaaagacgggaataattagaagggcagccataatcatttgggagagacagcagcatcctcctgggtaaggagtcctgccagctaagcagaaattcccaaatgcagaccctggatgggataataatgaccccagggatcgggtccaaatgcaagaccttagggagctaataattagagggattatgcagtccactcataggacacaaaacgtccccaaagcattcaagatccaacaacaagaagaggagactccctctgcatttctgcagaggctcagggatcaagtgaaaaaatattcaggattaaatccagaggacccagtagggcaaggccttttaaaggttaattttgtaactaaaagctgatgtaatattactaagaaactgcaaaagattaacggatggaataaaaaaccaattaaggaaatactgagggaagctcagaaagtttgtgtgtgtgtgtgagag----------------aaagagagagagagagagttaagctgctatacctgaaggaagagagacccagcggcacagctgtgtgtggcagcTGGCTTCTAAAAGCTGTTGATAAAGGTTACTGCTGAGTCATTTCCGcagagctgcctgtttttgcaga-----------------------------------------------cagacaaggggagccagggcacagcacggctctgctcatgcccagaga----aagaggaagaagctgAATGTGAGACAGAAAGGAAACAGGGG
s panTro5.chr6                    30178986 1101 + 175400573 aacgggagttgaacaatgagaacacatggacacagggaggggaacatcacacactggggcctgtctgagggtagggggc-taggggaggcatagcat-----------------------------taggag-aaatacctaatgtagacgatgggttgatgggtgcagcaaaccaccatggcacatgtatacctatgtaacaaacctgcatgttctgcacgtgtatcccagagtttaaagtataataatgataataaTAATaaattggatttgtaagtgtgcctttaacaagtactgaggttaggaattttaaaaaggaaatgaggccactctcggaagatcccctcagtttagcagaacagctagatcaatttttagaacctaatttttatacttgggctgagataattcaatcatgaatattctgtttactgggaaaaagacgggaataattagaagggcagccataatcatttgggagagacagcagcatcctcctgggtaaggagtcctgtcagctaagcagaaattcccaaatgcagatcctggatgggataataatgaccccagggatcgggtccaaatgcaagaccttagggagctaataattagggggattatgcagtccactcataggacacaaaatgtccccaaagcattcaagatacaacaacaagaagaggagactccctctgcatttctgcagaggctcagggatcaagtgaaaaaatattcaggattaaatccagaggacccagtagggcaaggccttttaaaggttaattttgtaactaaaagctgatgtaatattactaagaaactgcaaaagattaacggatggaataaaaaaccaattaaggaaatactgagggaagctcagaaagtttgtgtGTGTGTG------------------------AGagagaaagagagagttaagctgctatacctgaaggaagagagagccagcggcacagctgtgtgtggcagcTGGCTTCTAAAAGCTGTTGATAAAGGTTACTGCTGAGTCATTTCCGcagagctgcctgtttttgcaga-----------------------------------------------cagacaaggggagccagggcacagcacggctcggctcatgcccagagagagaaagagGAAGAAGCTGAGTGTGAGACAGAAAGGAAACAGGGG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30409628 1103 + 173848474 aatgggagttgaacaatgagaacacatggacacagggaggggaacatcacacactggggcctgtctgagggtagggggc-taggggaggcatagcat-----------------------------taggag-aaatacctaatgtagacgatgggttgatgggtgcagcaaaccaccatggcacatgtatacctatgtaacaaacctgcatgttctgcacgtgtatcccagagtttaaagtataataatgataataaTAATaaattggatttgtaagtgtgcctttaacaagtactgaggttaggaattttaaaaaggaaatgaggccactctcggaagatcccctcagtttagcagaacagctagatcaatttttagaacctaatttttatacttgggctgagataattcaatcatgaatattctgtttactgggaaaaagacgggaataattagaagggcagccataatcatttgggagagacagcagcatcctcctgggtaaggagtcctgtcagctaagcagaaattcccaaatgcagatcctggatgggataataatgaccccagggatcgggtccaaatgcaagaccttagggagctaataattagagggattatgcagtccactcataggacacaaaatgtccccaaagcattcaagatccaacaacaagaagaggagactccctctgcatttctgcagaggctcagggatcaagtgaaaaaatattcaggattaaatccagaggacccagtagggcaaggccttttaaaggttaattttgtaactaaaagctgatgtaatattactaagaaactgcaaaagattaacggatggaataaaaaaccaattaaggaaatactgagggaagctcagaaagtttgtgtGTGTGTG----------------------AGAGagaaagagagagagttaagcagctatacctgaaggaagagagagccagcggcacagctgtgtgtggcagcTGGCTTCTAAAAGCTGTTGATAAAGGTTACTGCTGAGTCATTTCCGcagagctgcctgtttttgcaga-----------------------------------------------cagacaaggggagccagggcacagcacggctcggctcatgcccagagagagaaagaggaagaagctgagtgtgaggcagaaaggaaaCAGGGG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             63760 1106 +   2037526 aatgggagttgaacagtgagaacacatggacacagggaggggaacatcacacactggggcctgtctgagggtagggggc-taggggaggcatagcat-----------------------------taggagaaaatacctaatgtagatgatgggttgatgggtgcagcaaaccaccatggcacatgtatacctatgtaacaaacctgcatgttctgcacatgtatcccagagtttaaagtataataatgataataaTAATaaattggatttgtaagtgcgcctttaacaagtactgaggttaggaattttaaaaaggaaatgaggccactctcggaagatcccctcagtttagcggaacagctagatcaatttttagaacctaatttttatacttgggctgagataattcaatcatgaatattctgtttactgggaaaaagacgggaataattagaagggcagccataatcatttgggagagacagcagcatcctcctgggtaaggagtcctgccagctaagcagaaattcccaaatgcagatcctggat-ggataataatgaccccagggatcgggtccaaatgcaagacctcagggagctaataattagagagattatgcagtccactcataggacacaaaacgtccccaaagcattcaagatccaacaacaagaagaggagactccctctgcatttctgcagaggctcagggatcaagtgaaaaaatatgcaggattaaatccagaggacccagtagggcaaggccttttaaaggttaattttgtaactaaaagctgatgtaatattactaagaaactgcaaaagattaacggatggaataaaaaaccaattaaggaaatactgagggaagctcagaaagtttgtgtgtgtgtgagagag--------------aaagagagagagagagagagttaagctgctatacctgaaggaagagagagccagcggcacagctgtgtgtggcagcTGGCTTCTAAAAGCTGTTGATAAAGGTTACTGCTGAGTCATTTCCGcagagctgcctgtttttgcaga-----------------------------------------------cagacaaggggagccagggcacagcacggctcggctcatgcccagaga----aagaggaagaagctgAGTGTGAGACAGAAAGGAAACA-GGG
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74744766 1125 + 122973662 aatgggagttgaacaatcagaacacatggacacagggaggggaacatcacacactggggcctgtctgagggtagggggc-taggggagggatagcat-----------------------------taggag-aaatacctaatgtagatgatgggttgatgggtgcagcaaaccaccacggcacatgtatacctatgtaacaaacctgcaggttctgcatatgtatcccagagcttaaagtataataatgaTAATAATAATaaattggatatgtaagtgtgcctttaacaagtactgaggttaggaattttaaaaaggaaatgaggccactctcggaagatcccctcagtttagcagaacacctggatcaatttttagaacccaatttttatacttggactgagataattcaatcatgaatattctatttactgggaaagagagggaaataattagaagggcagccataatcatttgggagggacagcagcatcctcctgggtaaggagtcctgccagctaagcagaaattcccaaatgcagatcctggatgggataataatggccccagggatcaggtccaaatgcaagaccttagggagctaataattagagggattatgcagtccacccctaggacacaaaatgtcccaaaagcattcgagatccaacaacaagaagaggagactccctctgcatttctgcagaggctcaaggatcaagtgaaaaaacattcaggattaaatccagaggacccagtagggcaaggccttttaaagattaattttgtaactaaaagctgatgtaatattactaagaaactgcagaagattaacggatggaataaaaaaccgattaaagaaatactgagggaaactcagaaagtttgtgtgtgtgtgtgtgtatgtgtgtacatgtgtgACAGaaagagagaaagagttaagctgctatacctgaaggaagagagagccagtggcacagctgtgtgtggcagcTGGCTTCTAAAAGCTGTTGATAAAGGTTACTGCTGAGTCATTTCCGcagagctgcctgtttttgcaga-----------------------------------------------cagaccaggggtgccagggcacagcacagctcggctcatgcccagagagagaaagagGAAGAAGCTAAGTGTGAGACAGAAAGGAAACATGGG
i nomLeu3.chr1a                   M 1091 C 0
s rheMac8.chr4                    30567200 1162 + 172585720 aatgggagctgaacaatgagaacatgtggacacgggaaggggaacatcacacaccagggcctgtctgggggtggggggcttaggggaggaatagcat-----------------------------taggag-aaatacctaatgtagatgatgagttgatgggtgcagcaaaccatcctggcatatgtatacctatgtaacaaacctacatgttctgcacatgtatcccagagcttaaagtataaaaataataataaTAA-----tgggtttataaatgtgcctttaacaagtactgaggttaggaattttaaaaaggaaataaagccactcttggaagatcccctcagtttagcagagcagctagatcagattttagaacccaatttttatacttgggctgat-taattcaatcatgaatattctgtttaccaggaaagacaggggaacaattagaagggcagccagaatcatttgggagagacagcagcatcctcctgggtaaggagtcctgccagctaagcagaaattcccaaatgcagatcctggatgggataataatgaccccagggatccggtctaaatacaagaccttagggagctaataattagagggattacacagtccactcctaggacacaaaatgtcccaaaagcattcgagatccaacaacaagaagaggagactccctctgcatttctgcagaggctcagggatcaagtggaaaaatattcaggattaaatccagaagacccagtagggcaaggccttttaaaggttaattttgtaactaaaagctgacctaatattactaagaaactgcaaaagattaatggatggaat-aaaaaacaattaaggaaatactgagggaaggtcataaagtgtgtgtgtgtatgtgta----tgtgtgtgtgtgtgAGAGagagagagagagagttaagctgctatatctgaaggaagagagagccagtggcacagctgtgtgtggCAACTGGCTTCTAAAAGCCATTGATAAAGGTTACTGCTGAGTCATTTCCGCAGAGCTGCCTGTTTTTGCAgacagcacaggagaaatacataatgtagatgatgagttgatgggtgcaTcagacgaggggagccagggcacagcatggctcggctcatgcccagagagagaaagagGAAGAAACTgagtgtgagagagaaaggaaacagggg
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      190525 1192 +    231697 aatgggagctgaacaatgagaacatgtggacacgggaaggggaacatcacacaccaggccctgtctgggggtggggggcttaggggaggaatagcattaggagaaatacctaatgtagatgatgagtaggag-aaatacctaatgtagatgatgagttgatgggtgcagcaaaccatcctggcatatgtatacctatgtaacaaacctacatgttctgcacatgtatcccagagcttaaagtataaaaataataataaTAA-----tgggtttgtaaatgtgcctttaacaagtactgaggttaggaattttaaaaaggaaatgaggccactcttggaagatcccctcagtttagcagagcagctagatcagattttagaacccaatttttatacttgggctgagataattcaatcatgaatattctgtttaccaggaaagacaggggaacaattagaagggcagccataatcatttgggagagacagcagcatcctcctgggtaaggagtcctgtcagctaagcagaaattcccaaatgcagatcctggatgggataataatgaccccagggatccggtctaaatacaagaccttagggagctaataattagagggattacacagtccactcctaggacacaaaatgtcccaaaagcattcgagatccaacaacaagaaaaggagactccctctgcatttctgcagaggctcagggatcaagtggaaaaatattcaggattaaatccagaagacccagtagggcaaggccttttaaaggttaattttgtaactaaaagctgacctaatattactaagaaactgcaaaagattaacggatggaat-aaaaaacaattaaggaaatactgagggaaggtcataaagtgtgtgtgtgtatgtgta----tgtgtgtgtgtgtgAGAGagagagagagagagttaagctgctatatctgaaggaagagagagccagtggcacagctgtgtgtggCAACTGGCTTCTAAAAGCCATTGATAAAGGTTACTGCTGAGTCATTTCCGCAGAGCTGCCTGTTTTTGCAgacagcacaggagaaatacctaatgtagatgatgagttgatgggtgcaTcagacgaggggagccagggcacagcatggctcggctcatgcccagagagagaaagagGAAGAAACTgagtgtgagagagaaaggaaacagggg
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            227139 1165 -    863181 aatgggagctgaacagtgagaacatgtggacacaggaaggggaacatcacacaccagggcctgtctgggggtggggggcttaggggaggaatagcat-----------------------------taggag-aaatacctaatgtagatgatgagttgatgggtgcagcaaaccaccctggcatgtgtatacctatgtaacaaacctacatgttctgcacatgtatcccagagcttaaagtataaaaataataaTAATAA-----tgggtttgtaaatgtgcctttaacaagtactgaggttaggaattttaaaaaggaaatgaggccactcttggaagatcccctcagtttagcagagcagctagatcagattttagaacccaatttttatacttgggctgagataattcaatcatgaatattctgtttaccgggaaagacaggggaacaattagaagggcagccagaatcatttgggagagacagcagcatcctcctgggtaaggagtcctgtcagctaagcagaaattcccaaatgcagatcctggatgggataatagtgaccccagggatccggtctaaatacaagaccttagggagctaataattagagggattacacagtccactcctaggacacaaaatgtcccaaaagcattcgagatccaacaacaagaagaggagactccctctgcatttctgcagaggctcagggatcaagtggaaaaatattcaggattaaatccagaagacccagtagggcaaggccttttaaaggttaattttgtaactaaaagctgacctaatattactaagaaactgcaaaagattaatggatggaat-aaaaaacaattaaggaaatactgagggaaggtcataaAgtgtgtgtgtgtatgtgtatg--tgtgtgtgtgtgtgAGAGagagagagagagagttaagctgctatatctgaaggaagagagagccagtggcacagctgtgtgtggCAACTGGCTTCTAAAAGCTATTGATAAAGGGTACTGCTGAGTCATTTCCGCAGAGCTGCCTGTTTTTGCAgacagcacaggagaaatacctaatgtagatgatgagttgatgagtgcaTcagacgaggggagccagggcacagcatggctcggctcatgcccagagagagaaagagGAAGAAACTgagtgtgagagagaaaggaaacagggg
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    76598 1111 -    117593 aatgggagctgaacaataagaacacgtggacacggggagaggaacatcacacaccagggcctgtctgggggtggggggcttaggggagggatagcat-----------------------------taggag-aaatacctaatgtagatgatgagttgatgggtgcagcaaaccaccctggcatgtgtatacctatgtaacaaacctacatgttctgcacatgtatcccagagcttaaagtataaaaataaTAATAATAA-----tgggtttgtaaatgtgcctttaacaagtactgaggttaggaattttaaaaaggaaacaaggccactcttggaagatcccctcagtttagcagagcagctagatcaaattttagaacccgatttttatacttgggctgagataattcaatcatgaatcttctgtttactgggaaagacaggggaataattagaagggcagccataatcatttgggagagacagcagcatcctcctgggtaaggagtcctgccagctaagcagaaattcccaaatgcagatcctggatgggataataatgaccccagggatctggtctaaatacaagaccttagggaactaataagtagagggattacacaatccactcctaggacacaaaatgtcccaaaagcattcgagatccaacaacaagaagaggacactccctctgcatttctgcagaggctcagggatcaagtggaaaaatactcaggattaaatccagaagacccagtagggcaaggccttttaaaggttaattttgtaactaaaagctgacctaatattactaagaaactgcaaaagattaatggatggaataaaaaaacaattaaggaaatactgagggaggctcagaaagtttgtgtGTGTGTGTGTA----------TGCGTGTGAGAGaaagagagagagagttaagctgctatatctgaaggaagagagagccagtggcacagctgtgtgtggCAACTGGCTTCTAAAAGCTGTTGATAAAGGTTACTGCTGAGTCATTTCCGcagagctgcctgtttttgcaga-----------------------------------------------cagacgaggggagccagggcacagcatggctcggctcatgcccagagagagaaagagGAAGAAACTGAGTGTGAGAGAGAAAGGAAACAGGGG
i chlSab2.chr17_KE148042v1_random C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             55047 21782 -   1829203 I
e manLeu1.NW_012107142v1             23294 3331 -    735854 I
e macNem1.NW_012012100v1            120704 7855 +   1495729 I

a score=966233.000000
s hg38.chr6_GL000254v2_alt         1309186 258 +   4827813 ATGACAGAGAGAGAATAGAAGAGGAAAATTAGCAAGAGAGACTAAAAGAGACAGAGATCAAAGAGAAACACAGAAGGTAAAACTGGGGAGACAAATAATGTAAAAGGAAAAAAGAGTACAAGACAAAGTGAGAGAATGCTGAGAGGTTGGCAGGGCTGGGGGAAGTTTCTGGGGACTTAAGCAACAAGGAGGTGCAGGGGAAGGGTGCATGCAGTGCGTGGCCACTGAGGAACGACAAAACCCGGGAACTGGGGGATG
s panTro5.chr6                    30180087 258 + 175400573 ATGACAGAGAGAGAATAGAAGAGGAAAATTAGCGAGAGAGACTAAAAGAGACAGAGATCAAAGAGAAACACAGAAGGTAAAACTGGGGAGACAAATAATGTAAAAGGAAAAAAGAGTACAAGACGAAGTGAGAGAATGCTGAGAGGTTGGCAGGGCTGGGGGAAGTTTCTGGGGACTTAAGCAACAAGGAGGTGCAGGGGAAGTGTGCATGCAGTGCGTGGCCACTGAGGAACGACAAAGCCCGGGAACTGGGGGATG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30410731 258 + 173848474 ATgacagagagagaatagaagaggaaaattagcgagagagactaaaagagacagagatcaaagagaaacacagaAGGTAAAACTGGGGAGACAAATAATGTAAAAGGAAAAAAGAGTACAAGACGAAGTGAGAGAATGCTGAGAGGTTGGCAGGGCTGGGGGAAGTTTCTGGGGACTTAAGCAACAAGGAGGTGCAGGGGAAGGGTGCATGCAGTGCATGGCCACTGAGGAACGACAAAGCCCGGGAACTGGGGAATG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             64866 258 +   2037526 ATGACAGAGAGAGAATAGAAGAGGAAAATTAGCAAGAGAGACTAAAAGAGACAGAGATCAAAGAGAAACACAGAAGGTAAAACTGGGGAGACAAATAATGTAAAAGGAAAAAAGAGTACAAGACAAAGTGAGAGAATGCTGAGAGGTTGGCAGGGCTGGGGGAAGTTTCTGGGGACTTAAGCAACAAGGAGGTGCAGGGGAAGGGTGCATGCAGTGCGTGGCCACTGAGGAACGACAAAACCCGGGAACTGGGGGATG
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74745891 251 + 122973662 ATGACAGAGAGAGAATAGAAGAGGCAAATTAGCGAGAGAGATTGAAAGAGACAGAGATCAAAGAGAAACACAGAAGGTAAAACT-GGGAGACAAATAATGTAAA--GGAAAAAGAGTAC-AGACGAAGTGAGAGAATG-TGAGA-GCTGGCAGGGCTGGGGGAAGTTTCTGGGGACTTAAGCAACAAGGAGGTGCAGGGAAAGGGTGCATGCAGTG-GTGGCCACTGAGGAACGACAGAGCCCGGGAACTGGGGGATG
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30568362 256 + 172585720 atgacagagagagaatagaagaggaaaattagcgagagagactaaaagagacagagatcaaagagaaatacagaAGGTAAAACTGGGGAGACAAATAATGTAAAAGGAAAAAAGAGTACACGACGAAGTGAGAGAATGCGGAGAGGTTGGCAGGGCTGGGAGAAGTTTCTGGGGGGTTAAGCAACAAGGAGTTGCAAGGAAAGGGTGCATGCAGTGCA--ACCACTGAGGAAGGACAGAGCCTGGGAACTGGGGGATG
i rheMac8.chr4                    C 0 I 1542
s macFas5.chr4_KE145577_random      191717 256 +    231697 atgacagagagagaatagaagaggaaaattagcgagagagactaaaagagacagagatcaaagagaaatacagaAGGTAAAACTGGGGAGACAAATAATGTAAAAGGAAAAAAGAGTACACGACGAAGTGAGAGAATGCGGAGAGGTTGGCAGGGCTGGGAGAAGTTTCTGGGGGGTTAAGCAACAAGGAGTTGCAAGGAAAGGGTGCATGCAGTGCA--ACCACTGAGGAAGGACAGAGCCTGGGAACTGGGGGATG
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            228304 256 -    863181 atgacagagagagaatagaagaggaaaattagtgagagagactaaaagagacagagatcaaagagaaacacagaAGGTAAAACTGGGGAGACAAATAATGTAAAAGGAAAAAAGAGTACACGACGAAGTGAGAGAATGTGGAGAGGTTGGCAGGGCTGGGGGAAGTTTCTGGAGGGTTAAGCAACAAGGAGTTGCAAGGAAAGGGTGCATGCAGTGCA--ACCACTGAGGAAGGACAGAGCCTGGGAACTGGGGGATG
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    77709 252 -    117593 CTGACAGAGAGAGAATAGAAGAGGAAAATTAGCGAGAGAGACTAAAAGAGACAGAGATCAAAGAGAAACACAGAAGGTAAAACTGGGGAGACAAATAATGTAAAAGGAAAAAAGAGTACACGATGAAGTGAGAGAATGCAGAGAGGTTGGCAGGGCTGGGGGAAGTTTCTGGGGGGTTAAGCAACAAGGAGTTGCAAGGAAAGGGTGCATGCAGTGCA--ACCACTGAGGAAGGACAGAGCCTGGGAACTGGGG----
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             26625 252 -    735854 ATgacagagagagaatagaagaggaaaattagcgagagagactaaaagagacagagatcaaagagaaatacagaAGGTAAAACTGGGGAGACAAATAATGTAAAAGGAAAAAAGAGTACACGACAAAGTGAGAGAATGCGGAGAGGTTGGCAGGGCTGGGAGAAGTTTCTGGGGGGTTAAGCAACAAGGAGTTGCAAGGAAAGGGTGCATGCAGTGCA--ACCACTGAGGAAGGACAGAGCCTGGGAACTGGGG----
i manLeu1.NW_012107142v1          I 3331 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             55047 21782 -   1829203 I
e macNem1.NW_012012100v1            120704 7855 +   1495729 I

a score=8022.000000
s hg38.chr6_GL000254v2_alt         1309444 4 +   4827813 GATG
s panTro5.chr6                    30180345 4 + 175400573 GATG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30410989 4 + 173848474 GATG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             65124 4 +   2037526 GATG
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74746142 4 + 122973662 GATG
i nomLeu3.chr1a                   C 0 C 0
s chlSab2.chr17_KE148042v1_random    77961 4 -    117593 GATG
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             26877 4 -    735854 GATG
i manLeu1.NW_012107142v1          C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             55047 21782 -   1829203 I
e cerAty1.NW_012002535v1            228560 0 -    863181 C
e macNem1.NW_012012100v1            120704 7855 +   1495729 I
e macFas5.chr4_KE145577_random      191973 0 +    231697 C
e rheMac8.chr4                    30568618 1542 + 172585720 I

a score=852761.000000
s hg38.chr6_GL000254v2_alt         1309448 231 +   4827813 CAAGTGAGAAAGGGATGTGGAGGAGAGTTTAGGATCAGGCTGCCTGAGGTGTAACGGGTTGCCTACAGCAAAAACTAGATGGCTGTTTATCAGGAGGTGGTCAAAAGGATTCAAGTTATGGAAGAGTAAATGAATAAGATAACATTAAGGTTTTGTTGTTGTTTTAGTGAGAGGCTGGAAGGCCACCAG-GGGCAGTTAGCTGTCAGTAAGGCAGCAGAAGGGCTGGGGTCG
s panTro5.chr6                    30180349 231 + 175400573 CAAGTGAGAAAGGGATGTGGAGGAGAGTTTAGGATCAGGCTGCTTGAGGTGTAACGGGTTGCCTACAGCAAAAACTAGATGGCTGTTTATCGGGAGGTGGTCAAAAGGATTCAAGTTACGGAAGAGTAAATGAATAAGATAACATTAAGGTTTTGTTGTTGTTTTAGTGAGAGGCTGGAAGGCCACCAG-GGGCAGTTAGCTGTCAGTAAGGCAGCAGAAGGGCTGGGGGCG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30410993 231 + 173848474 CAAGTGAGAAAGGGATGTGGAGGAGAGTTTAGGATCAGGCTGCTTGAGGTGTAACGGGTTGCCTACAGCAAAAACTAGATGGCTGTTTATCAGGAGGTGGTCAAAAGGATTCAAGTTACGGAAGAGTAAATGAATAAGATAACATTAAGGTTTTGTTGTTGTTTTAGTGAGAGGCTGGAAGGCCACCAG-GGGCAGTTAGCTGTCAGTAAGGCAGCAGAAGGGCTGGGGGCG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             65128 231 +   2037526 CAAGTGAGAATGGGATGTGGAGGAGAGTTTAGGATCAGGCTGCTTGAGGTGTAACGGGTTGCCTACAGCAAAAACTAGATGGCTGTTTATCAGGAGGTGGTCAAAAGGATTCAAGTTATGGAAGAGTAAATGAATAAGATAACATTAAGGTTTTGCTGTTGTTTTAGTGAGAGGCTGGAAGCCCACCAG-GGGCAGTTAGCTGTCAGTAAGGCAGCAGAAGGGCTGGGGTCG
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74746146 231 + 122973662 CAAGTGAGAAAGGGATGTGGAGGAGAGTTTAGGATCAGGCTGCTTGAGGTGTAACGGGTTGCCTACAGCAAAAACTAGATGGCTGTTTATCAGGAGGTGGTCAAAAGGATTCAAGTTATGGAAGAGTAAATGAATAAGACGACATTAAGGTTTTGTTGTTGTTTTACTGAGAGGCTATAAGGCCAGCAG-GGGCAGTTAGCTGTCAGTAAGGCTGCAGAAGGGCTGGGGGCG
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30570160 229 + 172585720 TAAGGGAGAAAGGGATGTGGA--AGAGTTTAggatcaggctgcttgaggcgtagtgggttgcctacagcaaaaactagatggctatttgtcaggaggtggtcaaaaggattcaagttatggaagagtaaatgaataagatgacattaaggtTTTGTTGTTGTTTTACTGAGAGGCTGTAAGGGCACCAG-GGGCAGTTAGCTGTCAGTAAGGCTGCAGAAGAGCTGGGGATG
i rheMac8.chr4                    I 1542 C 0
s macFas5.chr4_KE145577_random      191973 222 +    231697 TAAGGGAGAAAGGGATGTGGA--AGGGTTTAGGATCAGGCTGCTTGAGGTGTAATGGGTTGCCTACAGCAAAAACTAGATAGCTGTTTGTCAGGAGGTGGCCAAAAGGATTCAAGTTATGGAAGAGTAAATGAATAAGATGACATTAAGGTTTTGTTGTTGTTTTACTGAGAGGCTGTAAGGCCACC-G-GGGCAGTTAGCTGTCAGTAAGGCTGCAGAAGAGATG------
i macFas5.chr4_KE145577_random    C 0 I 11619
s cerAty1.NW_012002535v1            228560 222 -    863181 TAAGGGAGAAAGGGATGTGGA--AGGGTTTAGGATCAGGCTGCTTGAGGTGTAATGGGTTGCCTACagcaaaaactagatggctgtttgtcaggaggtggccaaaaggattcaagttatggaagagtaaatgaataagatgacattaaggtTTTGTTGTTGTTTTACTGAAAGGCTGTAAGGCCACC-G-GGGCAGTTAGCTGTCAGTAAGGCTGCAGAAGAGACG------
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    77965 229 -    117593 TAAGGGAGAAAGGGATGTGGA--AGGGTTTAGGATCAGGCTGCTTGAGGTGTAATGGGTTGCCTACAGCAAAAACTAGATGGCTGTTTGTCAGGAGGTGGTCAAAAGGATTCAAGTTATGGAAGAGTAAATGAGTAAGATGACATTAAGGTTTTGTTGTTGTTTTACTGAGAGGCTGTAAGGGCACC-AGGGGCAGTTAGCTGTCAGGAAGGCTGCAGAAGAGCTGGGGATG
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             26881 228 -    735854 TAAGGGAGAAAGGGATGTGGA--AGGGTTTAGGATCAGGCTGCTTGAGGTGTAATGGGTTGCCTATAGCAAAAACTAGATAGCTGTTTGTCAGGAGGTGGCCAAAAGGATTCAAGTTATGGAAGAGTAAATGAATAAGATGACATTAAGGTTTTGTTGTTGTTTTACTGAGAGGCTGTAAGGCCACC-A-GGGCAGTTAGCTGTCAGTAAGGCTGCAGAAGAGCTGGGGACG
i manLeu1.NW_012107142v1          C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             55047 21782 -   1829203 I
e macNem1.NW_012012100v1            120704 7855 +   1495729 I

a score=1112538.000000
s hg38.chr6_GL000254v2_alt         1309679 319 +   4827813 CTACATAAGGAAAATCAGTACTAgggctgtaaactcaaatgactacagggccagcaaataataaaaaggagggctgcagg-------------------gctgggtgggaactgtggcggctgctcagctcttcttacagtgctggcactgtgttgccagattgtctgctttgtcagaggacaaaattctgactttttatgtaaaatataattttaaaatgctgatattctgttcaaataacttaaaaacccaaaacaggcaaaaGAGGATGCCAGTTTGCAATCCCTGAAGTAGAGAGAGCTCGTGCTGGGGAAAAGTCTGCCAAAATGCTTTAAGG
s panTro5.chr6                    30180580 319 + 175400573 CTACATAAGGAAAATCAGAACTAgggttgtaaactcaaatgactacagggccagcaaataataaaaaggagggctgcagg-------------------gctgggtgggaaccgtggcggctgctcagctgttcttacagagctggcactgtgttgccagattgtctgctttgtcagaggacaaaattctgactttttatgtaaaatataattttaaaatgctgataatcagttcaaataacttaaaaacccaatacaggcaaaaGAGGATGCCAGTTTGCAATCCCTGAAGTAGAGAATGCTCGTGCTGGGGAAAAGTCTGCCAAAATGCTTTAAGG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30411224 319 + 173848474 CTACATAAGGAAAATCAGAACTAgggttgtaaactcaaatgactacagggccagcaaataataaaaaggagggctgcagg-------------------gctgggtgggaaccgtggcgGCTGCTCAGCTGTTCTTACAGAgctggcactgtgttgccagattgtctgctttgtcagaggacaaaattctgactttttatgtaaaatataattttaaaatgctgataatcagttcaaataacttaaaaacccaatacaggcaaaagaggatgccagtttgcaatccctgAAGTAGAGAGAGCTCGTGCTGGGGAAAAGTCTGCCAAAATGCTTTAAGG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             65359 318 +   2037526 CTACATAAGG-AAATCAGTACTAgggttgtaaactcaaatgactacagggccagcaaataataaaaaggagggctgcagg-------------------gctgggtgggaactgtggcggctgctcagctcttcttacagtgctggcactgtgttgccagattgtctgctttgtcagaggacaaaattctgactttttatgtaaaatataattttaaaatgctgataatctgttcaaataacttaaaaacccaatacaggcaaaaGAGGATGCCAGTTTGCAATCCCTGAAGTAGAGAGAGCTCGTGCTGGGGAAAAGTCTGCCAAAATGCTTTAAGG
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74746377 319 + 122973662 CTACATAAGGAAAATCAGAACTAgggttgtaaactcacatgactacagggccagcaaataataaacaggagggctgctgg-------------------agtgggagggaactgtggcagctgctcagctgcacttacagtgccagccctgtgttgccagattgtctgctttgtcagaagacaaaattctgactttttatgtaaaatataatttttaaatgctgataatcagttcaagtaacttaaaaacccaatacaggcaaaagaggatgccagtttgcaatccctgAAGTAGAGAGAGCTCGTGCTGGGGAAAAGTCTGCCAAAATGCTTTAAGG
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30570389 263 + 172585720 CTACATAAGGAGAATCAGCACTAGGGTTGTAAACTCAAATGACTACAGGGTCAGCAAACAATAAAAAGGAGGGCTGCAGGNNNNNNNNNNNNNNNNNNNNC--------------------------------------------------------------------------AGAGGACAAAATTCTGACTTTTTATGTAAAAGATAACTTCTAAATACTGATAATCAGTTCAAATAACTCAAAAACCCAACATAGGCAAAAGAGGATGTCAGTTTGCAAT-CCTGAATTAGAGAGAGTTCGTGCTGGGGAAAAGTCTGCCAAAACGCTTCAAGG
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      203814 319 +    231697 CTACATAAGGAGAATCAGCACTAgggttgtaaactcaaatgactacacggtcagcaaacaataaaaaggagggcttcagg-------------------gctgggtgggaactgtggcAGCTGCTCAGCTGTTCTCACagtgtcggcactgcgttggcagattgtctgctttgttagaggacaaaattctgacattttatgtaaaatataacttttaaatactgataatcagttcaaataactcaaaaactcaacacaggcaaaaGAGGATGTCAGTTTGCAATCCCTGAAGTAGAGAGAGTTCATACTGGGAAAAAGTCTGCCAAAACGCTTCAAGG
i macFas5.chr4_KE145577_random    I 11619 C 0
s cerAty1.NW_012002535v1            228782 319 -    863181 CTACATAAGGAGACTCAGCACTAgggttgtaaactcaaatgactacagggtcggcaaacaataaaaaggagggctgcagg-------------------gctgggtgggaactgtggcAGCTGCTCAGCTGTTCTCACAGTGTCGGCACTGCGTTGGCAGATTGTCTGCTTTGTCAGAGGACAAAATTCTGACATTTTATGTAAAATATAACTTTTAAATACTGATAATCAGTTCAAATAACTCAAAAACTCACCACAGGCAAAAGAGGATGTCAGTTTGCAATCCCTGAAGTAGAGAGAGTTCATACTGGGGAAAAGTCTGCCAAAATGCTTCAAGG
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    78194 319 -    117593 CTACATAAGGAGAATCCGCACTAgggttgtaaactcaaatgactacagggtcagcaaacaataaaaaggagggctgcagg-------------------gctgggtgggaactgtggcagctgctcagctgttctcacagcgccagtcctgtgttgccagattgtctgctttgtcagaggacaaaattctgactttttatgtaaaatataacttttaaatactgataatcagttcaaaTAAGTCACAAACCCAACACAGGCAAAAGAGGATGTCAGTTTGCAATCCCTGAAGTAGAGAGAGTTCATGCTGGGGAAAAGTCTGCCAAAACGCTTCAAGG
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             27109 319 -    735854 CTACATAAGGAGAATCAGCACTAgggttgtaaactcaaatgactacacggtcagcaaacaataaaaaggagggctgcagg-------------------gctgggtgggaactgtggcagctgctcagctgttctcacagtgtcggcactgcgttgacagattgtctgctttgtcagaggacaaaattctgacattttatgcaaaatataacttttaaacactgataatcagttcaaataactcaaaaactcaacacaggcaaaagaggatgtcagtttgcaatccctgAAGTAGAGAGAGTTCATGCTGGGGAAAAGTCTGCCAAAACGCTTCAAGG
i manLeu1.NW_012107142v1          C 0 I 1227
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             55047 21782 -   1829203 I
e macNem1.NW_012012100v1            120704 7855 +   1495729 I

a score=3437385.000000
s hg38.chr6_GL000254v2_alt         1309998 1167 +   4827813 TGGAATGTGTAAAAGTTCTGTTTCCCAGAGTCGGGCTGGGCCAGGGGAGGATCCTTGCAGCCCAGGAGGAGGAAAAGCCACTAAGTCCCCTCCCAGGGCTGGACAAACTGGAGACCCTTTACAGTTGCTGGGTCACCAGTGGGGGTTGCATGAAACACAAACAGTGCACCTCTAGGCCTGCCACGGAGAGGAACGGTGCCTTTGAAGc------acacacacacacacacacacaAAAAAAAAACAGGAAGGGAGGGCGGAGCCAGAAATGCCTTTTCTAATGAGAGTACCCATCAGGGAAGGCTCCACAGGCTGGCAGATCTTCAAACCAGCAGCTCTTGGCCCAAAGCCAAA-CCCAGCAGGGCCTGGCCAAGGGCACTCTGGGATGCCAGCTGGTCAGTCCCTTG-CCTCCCCAAGTTCCTCCTGGGGTCAATGGGCGCTGGGGAGGTGCCTAAACGAACAccagccagtttcttatgaaaaggagaggagaataagaaggcgtcagagtat-aactgtttagatatcacagagtatcaaactaaagttagtaccaaaccttaaaggaactctactacataatgggatgaggttgtttatgaatgggtcatcctgagtaataaatggtaaaagacacaatggctgtgctgtcatgaacaaaaacaaacaatccttatgtgaaaaagttaaattactcaataactggtcagcccaaacctgtaaattttatgcttttaaccagaccctaaagctcctagaagatcaagaagacactatatatactaattccaaatatgcctataaagtagtacacacctttgaaaaaatctggacagagcagggcctagaaaatagcagggcaaaataattggtacatggggaacaagttttagaaagcctcctgtttccagcagagacagccatagttcatgtaaatggccatcagaaaagaaacactatagaagctgtagggaacaggcttgtagataaggctgctaagcaagtctccctggaggaaaaa-tttaaactgtttagcccagatatccctaaggtgatattaaaaccccaattttcaaaagaggaggaaaagctaggcaagataggagccacttaaactaagaatggaaggtgagtgctccctgatgggagagaaataataaacaaacccataat
s panTro5.chr6                    30180899 1164 + 175400573 TGGAATGTGTAAAAGTTCTGTTTCCCAGAGTCGGGCTGGGCCAGGGGAGGATCCTTGCAGCCCAGGAGGAGGAAAAGCCACTAAGTCCCCTCCCAGGGCTGGACAAACTGGAGACCCTTTACAGTTGCTGGGTCACCAGTGGGGGTTGCATGAAACACAAACAGTGCACCTCTAGGCCTGCCAGGGAGAGGAACGGTGCCTTTGAAGC------ACaaaaaaaaaaaaaaa---aaaaaaaaaaCAGGAAGGGAGGGCGGAGCCAGAAATGCCTTTGCTAATGAGAGTACCCATCAGGGAAGGCTCCACAGGCTGGCAGATCTTCAAACCAGCAGTTCTTGGCCCAAAGCCAAA-CCCAGCAGGGCCCGGCCAAGGGCACTCTGGGATGCCAGCTGGTCAGTCCCTTG-CCTCCCCAAGTTCCTCCTGGGCTCAATGGGCCCTGGGGAGGTGCCTAAACTAACAccagccagtttcttatgaaaaggagaggagaataagaaggcgtcagagtat-aactgtttagatatcacagagtatcaaactaaagttagtaccaaaccttaaaggaactctactacataatgggatgaggttgtttatgaatgagtcatcctgagtaataaatggtaaaagacatgatggctgtgctgtcatgaacaaaaacaaacaatccttatgtgaaaaagttaaattactcaataactggtcagcccaaatctgtaaattatatgcttttaaccagaccctaaagctcctagaagatcaagaagacactatatatactaattccaaatatgcctataaagtagtacacaccttcgaaaaaatctggacagagcagggcctagaaaatagcagggaaaaataattggtacatggggaacaagttttagaaagcctcctgtttccagcagagacagccatagttcatgtaaatggccatcagaaaagaaacactatagaagctgtagggaacaggcttgtggctaagtctgctaagcaagtctccctggaggaaaaa-tttaaactgtttagcccagatatctctaaggtgatattaaaaccccaattttcaaaagaggaggaaaagctaggcaagataggagccacttaaactaagaatggaaggtgagtgctccctgatgggagagaaataataaacaaacccataat
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30411543 1162 + 173848474 TGGAATGTGTAAAAGTTCTGTTTCCCAGAGTCGGGCTGGGCCAGGGGAGGATCCTTGCAGCCCAGGAGGAGGAAAAGCCACTAAGTCCCCTCCCAGGGCTGGACAAACTGGAGACCCTTTACAGTTGCTGGGTCACCAGTGGGGGTTGCATGAAACACAAACAGTGCACCTCTAGGCCTGCCAGGGAGAGGAACGGTGCCTTTGAAGC------ACaaaaaaaaaaaaa-----aaaaaacaaaCAGGAAGGGAGGGCGGAGCCAGAAATGCCTTTGCTAATGAGAGTACCCATCAGGGAAGGCTCCACAGGCTGGCAGATCTTCAAACCAGCAGTTCTTGGCCCAAAGCCAAA-CCCAGCAGGGCCCGGCCAAGGGCACTCTGGGATGCCAGCTGGTCAGTCCCTTG-CCTCCCCAAGTTCCTCCTGGGCTCAATGGGCCCTGGGGAGGTGCCTAAACTAACAccagccagtttcttatgaaaaggagaggagaaaaagaaggcgtcagagtat-aactgtttagatatcacagagtatcaaactaaagttagtaccaaaccttaaaggaactctactacataatgggatgaggttgtttatgaatgagtcatcctgagtaataaatggtaaaagacatgatggctgtgctgtcatgaacaaaaacaaacaatccttatgtgaaaaagttaaattactcaataactggtcagcccaaatctgtaaattatatgcttttaaccagaccctaaagctcctagaagatcaagaagacactatatatactaattccaaatatgcctataaagtagtacacaccttcgaaaaaatctggacagagcagggcctagaaaatagcagggcaaaataattggtacatggggaacaagttttagaaagcctcctgtttccagcagagacagccatagttcatgtaaatggccgtgagaaaagaaacactatagaagctgtagggaacaggcttgtggataaggctgctaagcaagtctccctggaggaaaaa-tttaaactgtttagcccagatatctctaaggtgatattaaaaccccaattttcaaaagaggaggaaaagctaggcaagataggagccacttaaactaagaatggaaggtgagtgctccctgatgggagagaaataataaacaaacccataat
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             65677 1153 +   2037526 TGGAATGTGTAAAAGTTCTGTTTCTCAGAGTCGGGCTGGGCCA-GGGAGGATCCTTGCAGCCCAGGAGGAGGAAAAGCCACTAAGTCCCCTCCCAGGGCTGGACAAACTGGAGACCCTTTACAGTTGCTGGGTCACCAGTGGGGGTTGCATGAAACACAAACAGTGCACCTCTAGGCCTGCCACGGAGAGGAACGGTGCCTTTGAAGC------ACAAAAAA------------AAAAAAAAAACAGGAAGGGAGGGTGGAGCCAGAAATGCCTTTTCTAATGAGAGTACCCATCAGGGAAGGCTCCACAGGCTGGCAGATCTTCAAACCAGCAGCTCTTGGCCCAAAGCCAAACCCCAGCAGGGCCCGGCCAAGGGCACTCTGGGATGCCAGCTGGTCAGTCCCTTG-CCTCCCCAAGTTCCTCCTGGGGTCAATGGGCCCTCGGGAGGTGACTAAACTAACAccagccagtttcttatgaaaaggagaggagaataagaaagcgtcagagtataaactgtttagatatcacagagtatcaaactaaagttagtaccaaaccttaaaggaactctactacataatggaatgaggttgtttatgaatgggtcatcctgagcaataaatggtaaaagacacaatggctgtgctgtcatgaacaaaaacaaacaatccttatgtgaaaaagttaaattactcaataactggtcag-ccaaacctgtaaattttatgcttttaaccagaccctaaagctcctagaagatcaagaagacactatatatactaattccaaatatgcctataaagtagtacacacctttgaaaaaatctggacagagcagggcctagaaaatagcagggc-aaataattggtacatggggaacaag-tttagaaagcctcctgtttccagcagagacagccatagttcatgtaaatggccatcagaaaagaaacactatagaagctgtagggaacaggcttgtggataaggctgctaagcaagtctccctggaggaaaaa-tttaaactgtttagcccagatatccctaaggtgatattaaaaccccaattttcaaaagaggaggaaaagctaggcaagataggagccacttaaactaagaatggaaggtgagtgctccctgatgggagagaaataataaacaaacccataat
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74746696 1169 + 122973662 TGGAATGTATAAAAGTTCTGTTTCCCAGAGTCTGGCTGGGCCAGGGGAGGATTCTTGCAGCCAAGGAGGAGGAAAAGCCACTAAGTCCCCTCCCAGGGCAGGACAAACTGGAGACGCTTTGCAGTTGCTGGGTCACCAGTGGAGGTTGCATGAAACACAAACAGTGCAGCTCTAGGCCTGCCAGGGGGAGGAATGGTACCTTTGAAGCaaaataaccaaaaaacaaaaaaacaaaacaaaaaaaaaCGAAGGGAGGGCGGAGCCAGAAATGCCTTTGCTAATGAGAGTGCCCATCAGGGAAGGCTCCACAGGCTGGCAGCTCTTCAAACCAGCAGCTCTTGGCCCAAAGCCAAA-CCCAGCAGGGCCCCGCCAACGGCACTCTGGGATGCCAGCTGGTCAGTCCCTTG-CCTCCCCAAGTTCCTCTTGGGGTCAATGGACCCTGGGGAGGTGCCTAAACTAACGccagccagtttcttatgaaaaggagaggagaataagaaggcctcagaccat-acctgtttagatatcatagagtatcaaactaaagttagtaccaaaccttaaagaaactctactacataatgggatgaggttgtctgtgaatgggtcatcccgagtaataaatggtaaaagacacaatggctgtgctgtcattaataagaagaaacaatccttatgtgaaaaagttaaattattcaataactggtcagcccaatcctgtaaattatatgctctcaaccagaccctaaagctcctagaagaccaagaagacactatatatagtaattccaaatatgcctataaagtagtacacacctttgaaaaaatctggacagagcagggcctagaaaacagcagggcagaagaattggtacatggggaacaagttttagaaagcctcctgcttccagcagagatagccatagttcatgtaaatggccatccgaaaggaaacgctatagaagctgtagggaacaggcttgcagataaggctgctaagcaaatctccctggaggaaaag-tctaaactgttcagccaagatatccctaaggtaatattaaaaccccaattttcaaaagaggaggaaaagctaggcaagataggagccactcaaactaagaatggaaagtgagtgctccctgatggaagagaaataat----aaacccataat
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30570652 1148 + 172585720 AGTCATGTATAAAAGTTCTGTTTCCCAGAGCCGGGCTGGGCCAGGGAAGGATCCTTGCAGCCCAGGAGGAGGAAAAG-CAGTAAGTCCCCTCCCAGGGCGGGACAAACTGGAGACATTTTGCAGTTGCTGGGTCACCAGTGGGGGTTGCATGAAACACAAACAGGGCGGCTCTAGGCCTGCCAGGGAGAGGAATGGTACCTTTGAAGC------aaaaaaaa------------aaaaaaaaaaaaGGAAGGGAGGGCGGAGCGAGAAATGCCTTTGCTAATGAGAGTGCCCATCAGGGAAGGCGCCACAGGCTGGCAGCTCTTCAAACCAGCAGCTGTTGGCCCAAAGCCAAA-CCCAGCAGGGCCGGGCCAAGGGCACTCTGGGATGCCAGCTGGTCAGTCTCTTGCCCTCCCCAAGTTCCTCCTGGGGTCCATGGACCCTGGGGAGGTTCCTAAACTAACGctaaccggtttcttatgaaaaggagaggagaataagaagg--------cat-aactgtttagagatcagagagtatcaaactcaagttagtaacaaaccttaacgaaactctgctacataatgggatgaggttgtttgtgaatgggacatcctgagaaataaatggtaaaggacacaatggttgtgctgtcattaataaaaacaaacaatccttacgtgaaaaaggtaaattgctcaataactggtcagcccaaacctgtaaattatatgctcttaacccgaccctgaagctcctagaagaccaaggaaacactatatatactaattcacaatatgcctataaagtagtacacacctttgaaaaaatctggacagagcagggactagtcaatagcagggcaaaagaattggtacgtagggaacaagttttagaaagcctcctgcttccagcagagacagccatagttcatgcaaatggccatcagaaaggaaacactatggaagctgtagggaacagacttgtagataaggctgctaagtaagtctccctggaggaaaaattttaaactgttcagctcagatatccctaaggtgatatcaaaaccccaattttcaaaagaggaggaaaagttaggcaagataggagccactcatactaagaatggaagatgagtgctccctcatgggagagaaataataaacaaacccataat
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      204133 1148 +    231697 AGTCATGTATAAAAGTTCTGTTTCCCAGAGCTGGGCTGGGCCAGGGAAGGGTCCTTGCAGCCCAGGAGGAGGAAAAG-CAGTAAGTCCCCTCCCAGGGCGGGACAAACTGGAGACATTTTGCAGTTGCTGGGTCACCAGTGGGGGTTGCATGAAATA-AAACAGGGCAGCTCTAGGCCTGCCAGGGAGAGGAATGGTGCCTTTGAAGC-------------A------------AAAAAAAAAAAAGGAAGGGAGGGCGGAGCCAGAAATGCCTTTGCTAATGAGAGTGCCCATCAGGGAAGGCACCACAGGCTGGCAGCTCTTCAAACCAGCAGCTGTTGGCCCAAAGCCAAA-CCCAGCAGGGCTGGGCCAAGGGCACTCTGGGATGCCAGCTGGTCAGTCTCTTGCCCTCCACAGGTTCCTCCTGGGGTCCATGGACCCTGGGGAGGTTCCTAAACTAACGccaaccagtttcttatgaaaaggagaggagaataagaaggcgtcagaccat-aactgtttagagatcatagcgtatcaaactcaagttagtagcaaaccttaaagaaactctgctacataatgggatgaggttgtttgtgaatgggacatcctgagaaataaatggtaaaggacacaatggttgtgctgtcattaataaaaacaaacaatccttatgtgaaaaaggtaaattactcaataactggtcagcccaaacctgtaaattatatgctcttaaccagaccctaaagctcctagaagaccaaggaaacactatatatactaattcacaatatgcctataaagtagtacacacctttgaaaaaatctggacagagcagggactagtcaatagcagggcaaaagaattggtaggtggggaacaagttttagaaagcctcctgcttccagcagagacagccatagttcatgcaaatggccatcagaaaggaaacactatggaagctgtagggaacagacttgtagataaggctgctaggtaagtctccctggaggaaaaattttaaactgttcagctcagatatccctaaggtgatatcaaaaccccaattttcaaaagaggaggaaaagttaggcaagataggagccactcacactaagaatggaaggtgagtgctccctcatgggagagaaataataaacaaacccataat
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            229101 1151 -    863181 AGTCATGTATAAAAGTTCTGTTTCCCAGAGCCGGGCTGGGCCAGGGAAGGGTCCTTGCAGCCCAGGAGGAGGAAAAG-CAGTAAGTCCCCTCCCAGGGCGGGACAAACTGCAGACATTTTGCAGTTGCTGGGTCACCAGTGGGGGTTGCATGAAATA-AAACAGGGCAGCTCTAGGCCTGCCAGGGAGAGGAATGGTGCCTTTGAAGC---------AAAAA------------ATAAAAAAAAAAGGAAGGGAGGGCGGAGCCAGAAATGCCTTTGCTAATAAGAGTGCCCATCAGGGAAGGCACCACAGGCTGGCAGCTCTTCAAACCAGCAGCTGTTGGCCCAAAGCCAAA-CCCAGCAGGGCTGGGCCAAGGGCACTCTGAGATGCCAGCTGGTCAGTCTCTTGCCCTCCACAGGTTCCTCCTGGGGTCCATGGACCCTGGGGAGGTTCCTAAACTAACGccaaccagtttcttatgaaaaggagaggagaataagtaggcgtcagaccat-aactgtttagagatcatagcgtatcaaactcaagttagtagcaaaccttaaagaaactctgctacataatgggatgaggttgtttgtgaatgggacatcctgagaaacaaatggtaaaggacacaatggttgcgctgtcattaataaaaacaaacaatccttatgtgaaaaaggtaaattactcaataactggtcagcccaaacctgtaaattatatgcttttaaccagaccctaaagctcctagaagaccaaggaaacactatatatactaattcacaatatgcctataaagtagtacacacctttgaaaacatctggacagagcagggactagtcaatagcagggcaaaagaattggtaggtggggaacaagttttagaaagcctcctgcttccagtagggatagccatagttcatgcacatggccatcagaaaggaaacactatggaagctgtagggaacagacttgtagatacggctgctaagtaagtctccctggaggagaaa-tttaaactgttcagctcagatatccctaaggtgatatcaaaaccccaattttcaaaagaggaggaaaagctaggcaagataggagccactcacactaagaatggaaggtgagtgcttgctcatgggagagaaataataaataaacccataat
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    78513 1157 -    117593 AGTCATGTATAAAAGTTCTATTTCCCAGAGCCCGGCTGGGCCAGGGAAGGGTCCTTGCAGCCCAGGAGGAGGAAAAG-CAGTAAGTCCCCTCCCAGGGCGGGACAAACTGGAGACACTTTGCAGTTGCTGGGTCACCAGTGGGAGTTGCATGAAACACAAACAGAACAGCTCTAGGCCTGCCAGGGAGAGGAATGGTGCCTTTGAAGCaa----aaaaaaaa------------aaaaaaaaaaaaaaaaGGGAGGGCGGAGCCAGAAATGCCTTTGCTAATGAGAGTGCCCATCAGGGAAGGCGCCACAGGCTGGCAGCTCTTCAAACCAGCAGCTGTTGACCCAAAGCCAAA-CTCAGCAGGGCCGGGCCAAGGGCACTCTGGGATGCCAGCTGGTCCGTCTCTTGCCCTCCCCAGGTTCCTCCTGGGGTCCATGGACCCTGGGGAGGTTCCTAAACTAACGccaaccagtttcttatgaaaaggagaggagaataagaagacgtcagaccat-aactgtttagagatcatagagtatcaaactcaagttagtagcaaaccttaaagaaactctgctacataacgggatgaggttgtttgtgaatgggacatcctgagaaaccaacggtaaaggacacaatggttgtgctgtcattaataaaaacaaacaatccttatgtgaaaaaggtaaattactcaataactggtcagcccaaacctgtaaattatctgctcttaacccgaccctaaagctcctagaagaccaaggaaacactatatatactaattcacaatatgcctataaagtagtacacacctttgaaaaaatctggacagagcagggactagtcaatagcagggcaaaagaattggtacgcggggaacaagttttagaaagcctcctgcttccagcagagatagccatagttcatgcaaatagccatcagaaaggaaacactatggaagctgtagggaacagacttgtagataagtctgctaagtaagtctccctggaggaaaaa-tttaaactgttcagctcagatatccctaaggtgatattaaaaccccaattttcaaaagaggaggaaaagctaggcaagataggagcccctcatactaagaatggaaggtgagtgctccctgatgggagggaaataataaataaacccataat
i chlSab2.chr17_KE148042v1_random C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             55047 21782 -   1829203 I
e manLeu1.NW_012107142v1             27428 1227 -    735854 I
e macNem1.NW_012012100v1            120704 7855 +   1495729 I

a score=168254.000000
s hg38.chr6_GL000254v2_alt         1311165 306 +   4827813 aaaaaatctaatgttggccgg-tgcggtggctcatgcctgtaatcccagcactttgggaggcagaggcgggtggatcacaaggtcaggagatcaaaaccatcctggctaacacagtgaaaccccgtctctattaaaaatacaaaaaaactagccggggcgtggtggtgggtgcctgtagttccagctactcgggaggctgaggcaggataatggcatgaacccgagaggtggagcttgcagtgagccgagatcgtgccactgcactccagcctgggtgacaaagcgagattctgtctaaaaaaagaa
s panTro5.chr6                    30182063 306 + 175400573 aaaaaatctaatgttggccgggtgcggtggctcatgcctgtaatcccagcactttgggaggcggaggcgggtggatcacaaggtcaggagatcaaaaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaag-tagccggggcgtggtggtgggtgcctgtagttccagctactcgggaggctgaggcaggagaatggcatgaacccaagaggtggagcttgcagtgagccgagatcgtgccactgcactccagcctgggtaacagagcgagattctgtctaaaaaaagaa
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30412705 306 + 173848474 aaaaaatctaatgttggccgggtgcggtggctcatgcctgtaatcccagcactttgggaggcggaggcgggtggatcacaaggtcaggagatcaaaaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaag-tagccggggcgtggtggtgggtgcctgtagttccagctactcgggaggctgaggcaggagaatggcatgaacccaagaggtggagcttgcagtgagccgagatcgtgccactgcactccagcctgggtaacagagcgagattctgtctaaaaaaagaa
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             66830 306 +   2037526 aaaaaatctaatgttggccgggtgcggtggctcatgcctgtaatcccagcactttgggaggcagaggcgggtggatcacaaggtcaggagatcaaaaccatcctggctaacacagtgaaaccccgtctctattaaaaatacaaaaaac-tagccggggcgtggtggcgggtgcctgtagttccagctactcgggaggctgaggcaggagaatggcatgaacccgagaggtggagcttgcagtgagccgagatcgtgccactgcactccagcctgggtgacagagcaagattctgtctaaaaaaagaa
i gorGor5.CYUI01015528v1          C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             55047 21782 -   1829203 I
e manLeu1.NW_012107142v1             27428 1227 -    735854 I
e chlSab2.chr17_KE148042v1_random    79670   0 -    117593 C
e cerAty1.NW_012002535v1            230252   0 -    863181 C
e macNem1.NW_012012100v1            120704 7855 +   1495729 I
e macFas5.chr4_KE145577_random      205281   0 +    231697 C
e rheMac8.chr4                    30571800   0 + 172585720 C
e nomLeu3.chr1a                   74747865   0 + 122973662 C

a score=910.000000
s hg38.chr6_GL000254v2_alt         1311471 1 +   4827813 a
s panTro5.chr6                    30182369 1 + 175400573 a
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30413011 1 + 173848474 a
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             67136 1 +   2037526 a
i gorGor5.CYUI01015528v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    79670 1 -    117593 a
i chlSab2.chr17_KE148042v1_random C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             55047 21782 -   1829203 I
e manLeu1.NW_012107142v1             27428 1227 -    735854 I
e cerAty1.NW_012002535v1            230252 0 -    863181 C
e macNem1.NW_012012100v1            120704 7855 +   1495729 I
e macFas5.chr4_KE145577_random      205281 0 +    231697 C
e rheMac8.chr4                    30571800 0 + 172585720 C
e nomLeu3.chr1a                   74747865 0 + 122973662 C

a score=4353267.000000
s hg38.chr6_GL000254v2_alt         1311472 1143 +   4827813 aaaaaa-tctaatgtctatattgcataagggaagtcattggggtccccaggacatgtgtgatgaaatactaaagaattatgggtgtatagaaatgtatgccctggctaaacaagtgtgtgggaattgtgtgaactCC-----CAGGAAACAACTTAaggttaaaagaacttgtaacacaaaccccaccccttgagttcacagttcaccacttccagcctggcaactcagtgctaattaagacttggaaagaagacaagctccacccaagctgggaaggtccctatcaagtgaggcagctgtacaaacagctgatcaggggtggacacattacactcgggtcaagaaactggttaaaa------------aaaaaaa---------cGGAAGGTAAATTGGAAGTGTATAAATCACCTAAG--------------------------------------------------AAATCCTTTAAGCTAATTCTAAGGAAAACCTAAAAGTAAGCCATAAGCAGGCTCCATCACTGGGGGCTGATATGGTTAGAATTAATCCTAACACAAGGGGTGAAAGGAAACCTAAGTATtgtataagaaccacacgccacctaactgtaaaaatttaaagtgcaatcctatattaattactataaacaacccagctactctaaaccagaaaccttgaaggtataaattaaaaataaatatctcagaaaggaatcccatgggatggttagcttttaggttagtcaccaactctaccccaagcccatccagaattactagaactcctggtcccattaacttcctttaacccaccaaacaataaacctaagagagtaaaaataattaaagtaactgacttaaggcagactttaaaaattaaaacaggatatagagacataaatgcctgtgttaaatgggtgaaattttcagcacaagccctcgataaaagtaactgttatgcatgtgctgctggtcaacctcaggcacaggtggttccatttccccttggatgggatactaatcccaaaggaatgtgttgcgtgttggctgtataccaagacaaggttgcatggggaaataagacttgtaaaagtctgtcattgctctttcccactttgcagagatcagatcctaaagcaatcccctcattctctatagggaatataaatcactcctgttgtctctctagacagaaggtgaggttcgataaac
s panTro5.chr6                    30182370 1147 + 175400573 aaaaaaatctaatgtctatattgcataagggaagtcattggggtccccaggacatgtgtgatgaaatactaaagaattatgggtgtatagaaatgtatgccctggctaaacaagtgtgtgggaattgtgtgaactCC-----CAGGAAACAACTTAaggttaaaagaacttgtaacacaaaccccaccccttgagttcacagttcaccacttccagcctggcaactcagtgctaattaagacttggaaagaagacaagctccacccaagctgggaaggtccctatcaagtgaggcagctgtacaaacagctgatcaggggtggacacattacactcgggtcaagaaactggttaaaa------------aaaaaaaaa------acggaaggtaaaTTGGAAGTGTATAGATCACCTAAG--------------------------------------------------AAACCCTTTAAGCTAATTCTAAGGAAAACCTAAAAGTAAGCCATAAACAGGCTCCATCACTGGGGGCTGATATGGTTAGAATTAATCCTAACACAAGGGGTGAAAGGAAACCTAAGTATtgtataagaaccacacgccacctaactgtaaaaatttaaagtgcaatcctatattaattcctataaacaacccagctactctaaaccagaaaccttgaaggtataaattaaaaataaatatctcagaaaggaatcccgtgggacagttagcttttaggttagtcaccaactctaccccaagcccacccagaattactagaactcctggtcccattaacttcctttaacccaccaaacaataaacctaagagagtaaaaataattaaagtaactgacttaaggcagactttaaaaattaaaacaggatatagagacataaatgcctgtgttaaatgggtgaaattttcagcacaagccctcgataaaagtaactgttatgcatgtgctgctggtcaacctcaggcacaggtggctccatttccccttggatgggatactaatcccaaaggaatgtgttgcgtgttggctctataccaagacaaggttgcatggggaaataagacttgtaaaagtctgtcattgctctttcccactttgcagagatcagatcctaaagcaatcccctcattctctatagggaatataaatcactcctgttgtctctctagacagaaggtgaggttcgataaac
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30413012 1145 + 173848474 aaaaaa-tctaatgtctatattgcataagggaagtcattggggtccccaggacatgtgtgatgaaatactaaagaattatgggtgtatagaaatgtatgccctggctaaacaagtgtgtgggaattgtgtgaactCC-----CAGGAAACAACTTAaggttaaaagaacttgtaacacaaaccccaccccttgagttcacagttcaccacttccagcctggcaactcagtgctaattaagacttggaaagatgacaagctccacccaagctgggaaggtccctatcaagtgaggcagctgtacaaacagctgatcaggggtggacacattacactcgggtcaagaaactggttaaaa------------aaaaaaa-a------acagaaggTAAATTGGAAGTGTATAGATCACCTAAG--------------------------------------------------AAACCCTTTAAGCTAATTCTAAGGAAAACCTAAAAGTAAGCCATAAGCAGGCTCCATCACTGGGGGCTGATATGGTTAGAATTAATCCTAACACAAGGGGTGAAAGGAAACCTAAGTATtgtataagaaccacacgccacctaactgtaaaaatttaaagtgcaatcctatattaattactataaacaacccagctactctaaaccagaaaccttgaaggtataaattaaaaataaatatctcagaaaggaatcccgtgggacagttagcttttaggttagtcaccaactctaccccaagcccacccagaattactagaactcctggtcccattaacttcctttaacccaccaaacaataaacctaagagagtaaaaataattaaagtaactgacttaaggcagactttaaaaattaaaacaggatatagagacataaatgcctgtgttaaatgggtgaaattttcagcacaagcccttgataaaagtaactgttatgcatgtgctgctggtcaacctcaggcacaggtggctccatttccccttggatgggatactaatcccaaaggaatgtgttgcgtgttggctgtataccaagacaaggttgcatggggaaataagacttgtaaaagtctctcattgctctttcccactttgcagagatcagatcctaaagcaatcccctcattctctatagggaatataaatcactcctgttgtctctctagacagaaggtgaggttcgataaac
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             67137 1139 +   2037526 aaaaaaatctaatgtctatattgcataa-ggaagtcattggggtccccaggacatgtgtgatgaaatactaaagaattatgggtgtatagaaatgtatgccctggctaaacaagtgtgtgggaattgtgtgaactCC-----CA-GAAACAACTTAaggttaaaagaacttgtaacacaaaccccaccccttgagttcacagttcaccacttccagcctggcaactcagtgctaattaagacttggaaagaagacaagctccacccaagctgggaaggtccctatcaagtgaggcagctgtacaaacagctgatcaggggtggacacattacactcgggtcaagaaactggttaaaa------------aaaaaaa--------ccagaaggTAAATTGGAAGTGTATAGATCACCTAAG--------------------------------------------------AAACCCTTTAAGCTAATTCTAAGGAAAACCTAA----AAGCCATAAGCAGGCTCCATCACTGGGGGCTGATATGGTTAGAATTAATCCTAACACAAGGGGTGAAAGGAAACCTAAGTATtgtataagaaccacacgccacctaactgtaaaaatttaaagtgcaatcctatattaattactataaacaacccagctactctaaaccagaaatcttgaaggtataaattaaaaataaatatctcagaaaggaatcccgtgggacggttagcttttaggttagtcaccaactctaccccaagcccacccagaattactagaactcctggtcccattaacttcctttaacccaccaaacaataaacctaagagagtaaaaataattaaagtaactgacttaaggcagactttaaaaattaaaacaggatatagatacataaatgcctgtgttaaatgggtgaaattttcagcacaagccctcgataaaagtaactgttatgcatgtgctgatggtcaacctcaggcacgggtggttccatttcccctcggatgggatactaatcccaaaggaatgcgttgcatgttggctgtataccaagacaaggttgcatggggaaataagacttgtaaaagtctgtcattgctctttcccactttgcagagatcagatcctaaagcaatcccctcattctctatagggaatataaatcactcctgttgtctctctagacagaaggtgaggttcgataaac
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74747865 1144 + 122973662 aaaaaa-tctaatatctatattgcataagggaagtcattggggtccccaggccatgtgtgatgaaatactaaagaattatgggtgtatagaaatgtataccctggctaaacaagtgtgtgggaattgtgtgaactCC-----CAGGAAACAActt-aggttaaaagaacttgtaacacaaaccccacctcttgagttcacagttcaccacttccagcctggcaactcagtgctaattaagacttggaaagaagacaagctccacctaagctgggaaggtccctatcaagtgaggcagctgtacaaacagctgatcaggggtggacacattacactcgggtcaagaaactggttaaaa------------aaaaacaaa------acggaaggtaaattggaagtgtatagatcacctaag--------------------------------------------------aaacccttaaagctaattctaaggaaaacctaaaaggaagctatatgcaggctccatcactgggggctgatatggttagaatTAATCCTAACACAAGGGGTGAAAGGAAACCTAAGTATtgtataagaaccacacgccacctaactgtaaaaatttaaagtgcaatcctatattaattactataaacaacccagctacactaaactagaaactttgacggtataaattaaaaataaatatctcaaaaaggaatcttgcagaacggttagcttttaggttagtcaccaactctaccccaagtccacccagaattactataactcctggtcccattaacttcctttaacccaccaaataataaccctaagagagtaaaaataattaaagtaactgacttaaggcagactttaaaaattaaaacaggatatagagacataaatgcctgggttaaatgggtgaaattttcagcacaagcccttgataaaagtaactattatgtatgtgctgctggtcaacctcaggcacaggtggttccatttccccttggatggaatactaatcccaaaggaatgcgttgcatgttggctctataccaagacaaggatgcatggggaaataaggcttgtaaatatttgtcattgctctttcccactttgcagagatcagatcctaaagcaatcccctcgttctctatagggaatataaatcactcctgttgtctctctagacagaa-gtgaggttcgataaac
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30571800 1179 + 172585720 aaaaaa-tcgaatgtctacattgcataagggaagtcattggggtccccaggccatgtgtgatgaaatgctaaagaattatgggtgtatagaaatgtatacccttgctaaacaagtgtgtgggaattgtgCGAACTCCCAGGACAGGAAACCActt-cggttaaaagaaattgtaactcaaaccccacctcttgagttcacagttcaccattttcagccaggcaactcagtgctaattaaggcttggaaagaagacaagctccacccaagccgggaaggtccctgtcaagtgagacagctgtagaaacagctgatcgggggtggacacgttacactcgggtcaagaaactggttaaaa------------aaaaaaaaaaaacagaaggaaggtaaattggaagtgtatagatcacctaag-------------------------aaaccctttaagctaattctaaggaaaaccctttaagctaattctaaggaaaacctaaaaggaagctatacgcaggctccaacactgggggctgatatggttagaaCTAATCCTAACACAAGGGATGAAAGGAAACCTAAGTATTGTATAGGAACCACAcgccacctaactgtaaaaatttaaaatgcaatcctatattaattgccataaagaacccagctactctaaaccagaaaacttgaaggtataaattaaaaataaatatctcaaaaagcaactccatggaacagttagattttaggttagtcaccaactctaccccaagcccacccagaattactgtaactcccggtcccattaacttcctttaacccaccaaacaataaccctaagagagtaaaaacaattaaaataactgacttaaggcagactttaaaaattaaaacaggatatagagacataaatgcctgggttaaatgggtgaaattttcagcacaagccctcaataaaagtaactgttatgcgtgcgccgcc-gtcaacctcaggcacaggtggtcccgtttccccttggatgggatactaatcccaaaggaatgcattgcatgttggctgtataccaagacgaggatgcatggggaaataagacttgtaaaa-tctgtcattgctctttcccactttgcagagatcagatcctaaagcaatcccctcgttctctatagggagtataaatcactcctgttgcccctctagacagaagatgaagctcgataaac
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      205281 1180 +    231697 aaaaaa-tcgaatgtctatattgcataagggaagtcattggggtccccaggccatgtgtgatgaaatgctaaagaattatgggtgtatagaaatgtatacccttgctaaacaagtgtgtgggaattgtgtgaactCCCAGGACAGGAAACCActt-cggttaaaagaaattgtaactcaaaccccacctcttgagttcacagttcaccattttcagccaggcaactcagtgctaattaaggcttggaaagaagacaagctccacccaagccgggaaggtccctgtcaagtgagacagctgtagaaacagctgatcgggggtggacacgttacacttgggtcaagaaactggttaaaa------------aaaaaaaaaaaacagaaggaaggtaaattggaagtgtatagatcacctaag-------------------------aaaccctttaagctaattctaaggaaaaccCTTTAAGCTAATTCTAAGGAAAACCTAAAAGGAAGCTATACGCAGGCTCCAACACTGGGGGCTGATATGGTTAGAACTAATCCTAACACAAGGGATGAAAGGAAACCTAAGTATTGTATAGGAACCACAcgccacctaactgtaaaaatttaaaatgcaatcctatattaattaccataaagaacccagctactctaaaccagaaaacttgaaggtataaattaaaaataaatatctcaaaaagcaactccatggaacagttagattttagggtagtcaccaactctaccccaagcccacccagaattactgtaattcccggtcccattaacttcctttaacccaccaaacaataaccctaagagagtaaaaataattaaaataactgacttaaggcagactttaaaaattaaaacaggatatagagacataaatgcctgggttaaatgggtgaaattttcagcacaagccctcaataaaagtaactgttatgcgtgcgacgttggtcaacctcaggcacaggtggtcccatttccccttggatgggatactaatcccaaaagagtgcattgcatgttggctgtataccaagacgaggatgcatggggaaataagacttgtaaaa-tctgtcattgctcttttccactttgcagagatcagatcctaaagcaatcccctcgttctctatagggagtatcaatcactcctgttgcctctctagacagaaggtgaagctcgataaac
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            230252 1155 -    863181 aaaaaa-tcgaatgtctatattgcataagggaagtcattggggtccccaggccatgtgtgatgaaatactaaagaattatgggtgtatagaaacgtatacccttgctaaacaagtgtgtgggaattgtgtgaactCC-----CAGGAAACAActt-cggttaaaagaaattgtaactcaaaccccacctcttgagttcacagttcaccatttccagccaggcaactcagtgctaattaagacttggaaagaagacaagctccacccaagctgggaaggtccctaacaagtgagacagctgtacaaacagctgatt-ggggcggacacgttacactcgggtcaagaaactggttaaaa------aaaaACAAAAAACAAAAACAGAAGGAAGGTAAATTGGAAGTGTATAGATCACCTAAG--------------------------------------------------AAACCTTTTAAGCTAATTCTAAGGAAAACCTAAAAGGAAGCTATATGCAGGCTCCAACATTGGGGGCTGATATGGTTAGAATTAATCCTAACACGAGGGGTGAAAGGAAACCTAAGTATTGTATAGGAACCACAcaccacctaactgtaaaaatttaaaatacaatcctatattaattaccataaagaacccagctactctaaagcagaaaacttgaaggtataaattaaaaataaatatctcaaaaagcaactccttggaacagttagattttaggttagtcaccaactctaccccaagcccacccagaattactataactcttggtcccattaacttcctttaacccaccaaataataaccctaagagagtaaaaataattaaaatacctgacttaaggcagactttaaaaattaaaacaggatatagagacataaatgcctgggttaaatgggtgaaattttcagcacaagccctcaataaaagtaactgttacgcgtgcgccactggtcaacctcagtcacaggtggtcccatttccccttggatgggatactaatcccaaaggaatgcattgcatgttggctgtataccaagacgaggatgcatggggaaataagacttgtaaaa-tctgtcattgctcttttccactttgcagagatcagatactaaagcaatcccctcgttctctatagggagtataaatcactcctgttgtctctctagacagaaggtgaagtttgataaat
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    79671 1210 -    117593 aaaaaa-tcgaatgtctatattgtgtaagggaagtcattggggtccccaggccatgtgtgatgaaatactaaagaattatgggtgtatagaaatgtataacctcactaaacaagtgtgtgggaattgtgtgaactCC-----CAGGAAACAActt-cggttaaaagaaattgtaactcaaaccccaccccttgagttcacagttcaccatttccagccaggcaactcagtgctaattaagacttggaaagaagacaagctccacccaagctgggaaggtccctatcaagtgagacagctgtacaaacagctgagcgggggcggacatgttacagtcgggtcaagaaactggtTaaaaaaaaaaaaaaaaaaaaaaaaaaaaTTT--GGATGGTAAATTGGAAGTGTATAGATCACCTAAGAAACCCTTTAAGCTAATTCTAAGGAAAACCCTTTAAGCTAATTCTAAGGAAAACCCTTTAAGCTAATTCTAAGGAAAACCTAAAAGGAAGCTATACGCAGGCTCCAACACTGGGGGCTGATATGGTTAGAATTAATCCTAACACAAGGGGTGAAAGGAAACCTAAGTATTGTATAGGAACCACAcgccacctaactgtaaaaatttaaaatgcaatcctatattaattaccataaagaacccagctactctaaaccagaaaacttgaaggtataaattaaaaataaatatctcaaaaaggaactccatggaacagttagattttaggttagtcaccaactctaccccaagcctacccagaattactgtaactcccggtcccattaacttcctttaacccaccaaacaataaccctaagagagtaaaaataattaaaataactgacttaaggcagactttaaaaattaaaacaggatatagagacataaatgcctgggttaaatgggtgaaattttcagcacaagccctcaatagaagtaactgttatgcgtgcgccgctggtcaacctcaggcacaggtggtcccatttccccttggatgggatactaatcccaaaggaatgcattgcatgttggctgtataccaagacgaggatgcatagggaaataagacttgtaaaa-tctatcattgctcttttccactttgcagagatcagatcctaaagcaatcccctcgttctctatagggagtataaatcactcctgttgcctctctagacagaaggtgaagttcaataaac
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             28655 1161 -    735854 aaaaaa-ttgaatgtctgtattgcataagggaagtcattgcggtccccaggccatgtatgatgaaatactaaagaattatgggtgtatagaaatgtatacccttgctaaacaagtgtgtgggaattgtgtgaactCC-----CAGGAAACAActt-cggttaaaagaaattgtaactcaaatcccaccccttgagttcacagttcaccatttccagccaggcaactcagtgctaattaagacttggaaagaagacaagctccacccaagctgggaaggtccctaacaagtgagacagctgtacaaacagctgatc-agggcggacacgttacactcgggtcaagaaactggttaaaaaaCAAAAACAAAAACAAAAAAAAACAGAAGGAAGGTAAATTGGAAGTGTATAGATCACCTAAG--------------------------------------------------AAACCTTTTAAGCTAATTCTAAGGAAAACCTAAAAGGAAGCTATATGCAGGTTCCAACATTGGGGGCTGATATGGTTAGAATTAATCCTAACACGAGGGGTGAAAGGAAACCTAAGTATTGTATAGGAACCACAcaccacctaactgtaaaaatttaaaatgcaatcctatattaattaccataaagaacccagctactctaaaccagaaaacttgaaggcataaattaaaaataaatatctcaaaaagcaactccttggaacagttagattttaggttagtcaccaactctaccccaagcccacccagaattactataactcccagtcccattaacttcctttaacccaccaaataataaccctaagagagtaaaaataattaaaatacctgacttaaggcagactttaaaaattaaaacaggatatagagacataaatgcctgggttaaatgggtgaaatttccagcacaagccctcaataaaagtaactgttacgcgtgcgccactggtcaacctcaggcacaggtggtcccctttccccttggatgggatactaatccccaaggaatgcattgcatgttggctgtataccaagacgaggatgcatggggaaataagacttgtaaaa-tctgtcattgctcttttccactttgcagagatcagatactaaagcaatcccctcgttctctatagggagtataaatcactcctgttgtctctgtagacagaaggtgaagtttgataaac
i manLeu1.NW_012107142v1          I 1227 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             55047 21782 -   1829203 I
e macNem1.NW_012012100v1            120704 7855 +   1495729 I

a score=2135982.000000
s hg38.chr6_GL000254v2_alt         1312615 835 +   4827813 ctgtgggaaaactcacaacctgcacccacatcctaaatgtcactggtaacccagactgtggcaaccactcagctctccatataccccaggcaaatgtctggtggtatttcgggaaagggaacctccgtaacttgttaccgtccaattggaccgggacttgtgctttagtacaattggccattccgttcaccctgtcattccatgaaacagctaaaaatacacatggtcatagagatcagagtaatttagcaatttattttaacccatatataATGTGTGTGTGtatatatatat----------atacacacacacacacacaaacatatgcatatacatata--------tatatatacacacacacacatatatatat--------a--cacacacacatacacacaAGGCTTCTGGAACAGTGGATGAAAGCTTTGTAtatctatctatccatct------------------------------------------------atctatctatcta--------tctatctatctatctatctaAactccataggagtacctagaggagtgcctaataaatttaaagcacgaaaccaaatacctgctagatttgagtcagcacttttctggtggtcaactattaacaagaatataaattagattaattacatgtcttataatcagcaaagattcatcaattacacgcaaaatgcccttaagggagtagccagacaactaaatgccactagctaaatggcttgggaaaacagaattacactggacataatattagcagagaaaggtgatatatgtgatatgctgggtggaaaatgtgacactttcattcacaacaatgctgccccagatggaaccatcataaagggactgcagggactaacaactctagtcaacgag
s panTro5.chr6                    30183517 825 + 175400573 ctgtgggaaaactcgcaacctgcacccacatcctaaatgtcactggtaacccagactgtggcaaccactcagctctccatataccccaggcaaatgtctggtggtatttcgggaaagggaacctccgtaacttgttaccgtccaattggaccgggacttgtgctttagtacaattggccattccgttcaccctgtcattccatgaaacagctaaaaatacacatggtcatagagatcagagtaatttagcaatttattttaacccatatataATGTGTGTGtatatatatatat----------acacacacacacaaacatatacatatacatatatatatacacacacatatatatacacacacacacatatatatat--------atacacacacacatacacacaAGGCTTCTGGAACAGTGGATGAAAGCTTTGTAtatctatctatccatct------------------------------------------------atctatctatcta----------------------------Aactccataggagtacctagaggagtgcctaataaatttaaagcacgaaactaaatacctgctagatttgagtcagcacttttctggtggtcaactattaacaagaatgtaaattagattaattacatgtcttataatcagcaaagattcatcaattacacgcaaaatgcccttaagggagtagccagacaactaaatgccactagctaaatggcttgggaaaacagaattacactggacataatattagcagagaaaggtgatatatgtgatatgctgggtggaaaatgtgacagtttcaatcacaacaatgctgccccagatggaaccatcataaagggactgcagggactaacaactctagtcaacgag
i panTro5.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             68276 851 +   2037526 ctgtgggaaaactcgcaacctgcacccacatcctaaatgtcactggtaacccagactgtggcaaccactcaactctccatataccccaggcaaatgtctggtggtatttcgggaaagggaacctccgtaacttgttaccgtccaattggaccgggacttgtgctttagtacaattggccattccgttcaccctgtcattccatgaaacagctaaaaatacacatggtcatagagatcagagtaatttagcaatttattttaacccatatataATGTGTGTGtatatatatatatatatatacacacacacacgcacaaacatatacatatacatatatatacacacacatatatatacacacacacacacatatatatat--------acacacacacacatactcacaAGGCTTCTGGAACAGTGGATGAAAGCTTTGTAtatctatctatccatct------------------------------------------------atctatctatcta------------tctatttatctatcCAAactccatgggagtacctagaggagtgcctaataaatttaaagcacgaaaccaaatacctgctagatttgagtcagcacttttctggtggtcaactattaacaagaatgtaaattagattaattacatgtcttataatcagcaaagattcatcaattacatgcaaaatgcccttaagggagtagccagacaactaaatgccactagctaaatggcttgggaaaacagaattgcactggacataatattagcagagaaaggtggtatatgtgatatgctgggtggaaaatgtgacactttcattcacaacaatgctgccccaaatggaaccatcataaagggactgcagggactaacaactctagtcaacgag
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74749009 795 + 122973662 ccgtgggaaaactctcaacctgcacccacatcctaaatgtcactggtaaccttgactgtggcaaccactcagctctccgtatacccca-gcaaatgtctggtggtatttcgagaaaaggaacctccgtaacttgttaccatccaattggaccaggacttgtgctttagtacaattggccatcccgttcaccctggcattccatgaaatagctaaaaatacacatgctcattgagatcagagtaatttagcaatttattttaacccatatata---------tatatatatatat----------------acacacaaacatatacatatacatatatatata--------------------------------------------------cacacacatacacacaAGGCTTCTGGAACAGTGGATGAAAGCTTTGCAtatctatctatccatct------------------------------------------------atctatctatctatctatctatctatctatctatctatctaAactccataagagtacctagaggagtgcttaataaatttaaagcatgaaaccaaatacctgctagatttgagtcagcacttttctggtggtcagctattaacgagaatgtaaattggattaattacatgtcttacagtcagcaaagattcatcaattacactcaaaatgcccttaagggagtagccagacaactaaatgccactagctaaatggcttgggaaaacagaattgcactggacataatattagcagagaaaggtggtacatgtgatatgctgggtggaaaatgtgacactttcattcacaacaatgctgccccaaatggaaccatcataaagggactgcagggactaacaactctagtcaatgag
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30572979 834 + 172585720 ccatgggaaaactctcaacctgtacccacatcctaaatatcactgggaacccagaatgaggcaaccactcg-------------------------------------tcaggaaagggaccctctgtaacttgttactgtccaattggaccgggacttgtgctttagtacaattggccattccgttcaccctggcattccataaaatagctaaaaatacacatggtcattgagatcagagaaatttagcaattcattctaacccatatata-------------tACACatat----------atatatacacacacacacgtgcacatacatatatatata--------tatgtat--------atatatatacacacacacacatacacacacacacatacacacaAGGCTTCTGGATC-GGGGATGAAAACTTTGTAtatctatctatctattcatctatctatccatctatctatctatctattaatctatctatctatctatctatctatcta--------tctatctatctatctatctaAactccataggagtacctagaggacagcctaatacattcaaagcatgaaatcaaatacctgctggatttgagtgagcacttttctggtggtcaactattaacaagaatgtaaattggattaattacatgtcttataatcagcaaagattcatcaattacactccaaatgcccttaagggagaaaccagataactaaaggccactagctaaatggcttgggaaaacagaattgcactggagataatattagcagagaaacgtggtacatgcgatacgctgggcagaaaatgtgacactttaattcacaacaatgctgcctcaaatggaaccatcataaagggactgcagggactaacaactctagtcaatgag
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      206461 763 +    231697 ccgtgggaaaactctcaacctgcacccacatcctaaatgtcactgggaacccagaatgaggcaaccgctca-------------------------------------tcaggaaagggaccctctgtaacttgttaccgtccaattggaccgggacttgtgctttagtacaattgtccattccgttcaccctggcattccataaaatagctaaaaatacacatggtcattgagatcagagaaatttagcaatttattttaacccatatata-------------tatacacat----------acacacacacacacacac--------------------------------------------atatatatacacac--------acacacacacacatacacacaaggcttctggatcaggggatgaaaactttgtatatctatctatctattc------------------------------------atgtatccatctatctatctatcta--------tttatctatctatctatctaaactctataggagtacctagaggacagcctaataaatttaaagcatgaaaccaaatacctgctgaatttgagtcagcacttttctggtggtcaactattaacaagaatgtaaattggattaattacatgtcttataatcagcaaagattcatcaattacactccaaatgcccttaagggagaagccagacaactaaaggccagtagctaaatggcttgggaaaacagaattgcactggacataatattagcagagaaacgtggtacatgcgatatgctcggcagaaaatgtgacactttcattcacaacaatgctgcctcaaatggaaccatcataaagggactgcagggactaacaactctagtcaatgag
i macFas5.chr4_KE145577_random    C 0 C 0
s cerAty1.NW_012002535v1            231407 763 -    863181 ccgtgggaaaactctcaacctgcacccacatcctaaatgtcactgggaacccagaatgaggcaaccactca-------------------------------------tcaggaaagggaccctccgtaacttgttaccatccaattggaccaggacttgtgctttagtacaattgtccattccgttcaccctggcattcattaaaatagctaaaaatacacatggtcatcaaaatcagagaaatttagcaatttattttaacccatatata-------------tacacatac----------acacacacacacacacac--------------------------------------------acatatatatatat--------acacacacacacatacacacaATGCTTCTGGATCAGGGGATGAAAACTTTGTAtatctatctatctattc------------------------------------atctatctatctatctatctatcta--------tctatctatctatctatctaAactccataggagtacctagaggacagcctaataaatttaaagcatgaaaccaaatacctgctggatttgagtcagcacttttctggtggtcaactattaacaagaatgtaaattggattaattatatgtcttataatcagcaaagattcatcaattacactccaaatgcccttaagggagaagccagacaactaaaggccactagctaaatggcttgggaaaacagaattgcactggacataatatgagcagagaaacgtggtacatgcaatatgctgggcagaaaatgtgacactttcattcacaacaatgctgcctcaaatggaaccatcataaagggactgcagggactaacaactctagtcaatgag
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    80881 757 -    117593 ccatgggaaaactctcaacctgcacccacatcctaaatgtcactgggaacccagaaggaggcaaccactca-------------------------------------tcaggaaagggaccctctgtaacttgttactgtccaattggaccgggacttgtgctttagtataattggccattccgttcaccctggcattccataaaatagctaaaaatacacatggtcatcgagatcagagaaatgtagcaatttattttaacccatatata-------------tacacatat----atatatatacacacgcacacacac--------------------------------------------acacatatatacac--------acacacacacacaaacacacaagacttctggatcaggggatgaaaactttgtatatctatccatctatct------------------------------------------------atctatctatcta--------tctatctatctatctatctaaactccataggagtacctagaggacagcctaatacattcaaagcatgaaatcaaatacctgctggatttgagtgagcacttttctggtggtcaactattaacaagaatgtaaattagattaattacatgtcttataatcagcaaagattcatcaattacactccaaatgcccttcagggaaaagccagacaactaaagaccactagctaaatgacttgggaaaacagaattgcactggacataatattagcagagaaacgtggtacatgcgatatgctgggcagaaaatgtgacactttcattcacaacaatgctgcctcaaatggaaccatcataatgggactgcaggtactaacaactctagtcaatgag
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             29816 745 -    735854 ccatgggaaaactctcaacctgcacccacatcctaaatgtcactgggaacccagaatgaggcaaccattca-------------------------------------tcaggaaaggaaccctccgtaacttgttaccatccaattggaccaggacttgtgctttagtacaattgtccattccgttcaccctggcattcattaaaatagctaaaaatacacatggtcatcgaaatcagagaaatttagcaatttattttaacccatatata-------------tacacatat----------------acacacacacac--------------------------------------------acacatatatatat--------acacacacacacatacacacaAAGCTTCTGGATCAGGGGATGAAAACTTTGTAtatctatctatctattc------------------------------------------------atctatctatcct--------tctatctatctatctatctaAactccataggagtacctagaggacagcctaataaatttaaagcatgaaaccaaatacctgctgaatttgagtcagcacttctctggcggtcaactattaacaagaatgtaaattggattaattataagtcttataatcagcaaagattcatcaattacactccaaatgcccttaagggagaagccagacaactaaaggccactagctaaatggcttgggaaaacagaattgcactggacataatatgagcagagaaacgtggtacatgcaatatgctgggcagaaaatgtgacactttcattcacaacaatgctgcctcaaatggaaccatcgtaaagggactgcagggactaacaactctagtcaatgag
i manLeu1.NW_012107142v1          C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             55047 21782 -   1829203 I
e macNem1.NW_012012100v1            120704 7855 +   1495729 I
e panPan2.chr6                    30414157   0 + 173848474 C

a score=1260011.000000
s hg38.chr6_GL000254v2_alt         1313450 360 +   4827813 ctggcagaaaacacaggagtaaatgacctttttactaactggttagaaggttggt-ttgaaaaatggaaaggaatggtaccttcaattcttacatctctcgtga-----ttatggctggggtcttaacagccataggatgttgtatcataccttgtgtgaagggtttaacacaaaggttaattaaagcagctattagtaaacaaatgcccctaatgtcccaacagaatgacttactattattaaaagccaaactaaacttctcctcctataatgaagaaagtaaaaaacttccagaacagttaataaacaaagatatctaagtgaaaataagaccaaaaagggt-------aaaaagaaaaagaggaggtaaA
s panTro5.chr6                    30184342 360 + 175400573 ctggcagaaaacacaggagtaaatgacctttttactaactggttagaaggttggc-ttgaaaaacggaaaggaatggtaccttcaattcttacatctcttgtga-----ttatggctggggtcttaacagccataggatgttgtatcataccttgtgtgaagggtttaacacaaaggttaattaaagcagctattagtaaacaaatgcccctaatgtcctaacagaatgacttactattattaaaagccaaactaaacttctcctcctatgatgaagaaagtaaaaaacttccagaacagttaataaacaaagatatctaagtgaaaataagaccaaaaagggt-------aaaaagaaaaagaggaggtaaG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30414157 360 + 173848474 ctggcagaaaacacaggagtaaatgacctttttactaactggttagaaggttggc-ttgaaaaacggaaaggaatggtaccttcaattcttacatctctcgtga-----ttatggctggggtcttaacagccataggatgttgtatcatctcttgtgtgaagggtttaacacaaaggttaattaaagcagctattagtaaacaaatgtccctaatgtcccaacagaatgacttactattattaaaagccaaactaaacttctcctcctatgatgaagaaagtaaaaaacttccagaacagttaataaacaaagatatctaagtgaaaataagaccaaaaagggt-------aaaaagaaaaagaggaggtaaG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             69127 360 +   2037526 ctggcagaaaacacaggagtaagtgacccttttactaactggttagaaggttggt-ttgaaaaatggaaaggaatggtaccttcaattcttacatctctcgtga-----ttatggctggggtcttaacagccataggatgttgtatcatcccttgtgtgaagggtttaacacaaaggttaattaaagcagctattagtaaacaaatgcccctaatgtcccaacagaatgacttactattattaaaagccaaactaaacttctcctcctataatgaagaaagtaaaaaacttccagaacagttaataaacaaagatatctaagtgaaaataagaccaaaaagggt-------aaaaagaaaaagaggaggtaaG
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74749804 359 + 122973662 ctgacagaaaacacaggagtaaatgactcttttactaactggttagaaggtttccattgaaaaatagaaaggagtggtagcttcaattcttacatctcccgtaa-----ttatggctggggtcttaacagccataggatgttgtatcatcccttgtgtgaagggtttaacacaaaggataattaaagcagctattagtaaacaaatgcccctaatgtcccaacagaatgatttactattattaaaagccaaactaaacttctcctcctataatgaagaaagtaaaaaac--ccagaacagttaataaacaaagatatctaagtgaaaataagaccaaaagaggc-------aaaaagaaaaagaggaggtaaG
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30573813 346 + 172585720 ctggcagaaaacacaggagtaaacgactctttcactaactggttaggaggttggt-tggaaaaatggaaaggaatggtagcttcagttcttacatctctcataagacccctaaggctggggtcttagcagccacaggatgttgtgtcatcccttgtgtgaagggcttaacacaaaggttaatgaaagtagctattaataaacaaatgccgctaatgtcccaacagaatgacttactattattaaaagtcaaactaaactcctcctcctataatgaagaaagt-aaaaacttcc------------------agatatctaagtgaaaataagaccaaaaagggt-------aaaaagaaaaagaggagggaac
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4_KE145577_random      207224 353 +    231697 ctggcagaaaacacaggagtaaacgactctttcactaactggttaggaggttggt-tggaaaaatggaaaggaatggtagcttcagttcttacatctctcataagacccctaaggctggggtcttagcagccacaggatgttgtgtcatcccttgtgtgaagggcttaacacaaaggttaatgaaagtagctattaataaacaaatgccgctaatgtcccaacagaatgacttactattattaaaagtcaaactaaactcctcctcctataatgaagaaagt-aaaaacttcc------------------agatatctaagtgaaaataagaccaaaaagagtaaaaaaaaaaaaaaaaaagaggagggaac
i macFas5.chr4_KE145577_random    C 0 N 0
s cerAty1.NW_012002535v1            232170 348 -    863181 ctggcagaaaacacaggagtaaacgacccttttactaactggttagaaagttggt-ttgaaaaatggaaaggaatggtagcttcagttcttacatctctcataa-----tcatggctggggtcttaacaaccataggatgttgtgtcatcccttgtgtgaagggcttaacacaaaggttaatgaaagtagctattaataaacaaatgccactaatgtcccaacagaatgacttactattattaaaagtcaaactaaactcctactcctataatgaagaaagt-aagaacttcc------------------agatatctaagtgaaaataagaccaaaaagggttaaaaaaaaaaaaaaaaggaGGAGAGAAC
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    81638 346 -    117593 ctggcagaaaacacaggagtaaatgacccttttactaactggttagaaggttggt-ttgaaaaatggaaaggaatggtagcttcagttcttacatcgctcataagacccctaaggctggggtcataacagccataggacgttgtgtcatcccttgtgtgaagggcttaacacaaaggttaatgaaagtagctattaataaacaaatgccactaatgtcccaacagaatgacttactattattaaaagtcaaactaaactcctcctcctataatgaagaaagt-aaaaacttcc------------------agatatctaagtgaaaataagaccaaaaagggt-------aaaaagaaaaagaggagggaac
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             30561 346 -    735854 ctggcagaaaacacaggagtaaacgacccttttactaactggttagaaagttggt-ttgaaaaatggaaaggaatggtagcttcagttcttacatctctcataa-----tcatggttggggtcttaacaaccataggatgttgtgtcatcccttgtgtgaagggcttaacacaaaggttaatgaaagtagctattaataaacaaatgccgctaatgtcccaacagaatgacttactattattaaaagtcaaactaaactcctcctcctataatgaagaaagt-aagaacttcc------------------agatatctaagtgaaaataagaccaaaaagggttaaaa--aaaaaAAAAAGGAGGAGAGAAC
i manLeu1.NW_012107142v1          C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             55047 21782 -   1829203 I
e macNem1.NW_012012100v1            120704 7855 +   1495729 I

a score=229236.000000
s hg38.chr6_GL000254v2_alt         1313810 65 +   4827813 TGTAAAAAATAACCTACATGTGAAGGTTCATTTTCC----TAAGTGCCTTAGAATATGTTTAAGCAGGC
s panTro5.chr6                    30184702 65 + 175400573 TGTAAAAAATAACCTACATGTGAAGGTTCATTTTCA----TAAGTGCCTTACAATATGTTTAAGCAGGC
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30414517 65 + 173848474 TGTAAAAAATAACCTACATGTGAAGGTTCATTTTCA----TAAGTGCCTTAGAATATGTTTAAGCAGGC
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             69487 64 +   2037526 TGTAAAAAATAA-CTACATGTGAAGGTTCATTTTCA----TAAGTGCCTTAGAATATGTTTAAGCAGGC
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74750163 65 + 122973662 CGTAAAAAATAACCTACATGTGATAGTTCATTTTCA----TAAGTGCCTTAGAATATGTTTAAGCAGGC
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30574159 65 + 172585720 tgtaaaAAATAACCTACATGTGATGGCTCATTTTCA----TAAGTGCCTTAGAATATGTTTAAGCAGGC
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                    29945560 69 - 170955103 TGTCAAAAATAAGCCACATATGATGGTTCATTTTCAATTTTAAGTGCCTTAGTATAGGTTTAATATGGA
i macFas5.chr4                    N 0 I 10
s cerAty1.NW_012002535v1            232518 65 -    863181 TGTAAAAAATAACCTACACGTGATGGTTCATTTTCA----TAAGTGCCTTAGAACATGTTTAAGCAGGC
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    81984 65 -    117593 tGTAAAAAATAAACTACACATGATGGTTCATTTTCA----TAAGTGCCTTAGAATATGTTTAAGCAGGC
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             30907 65 -    735854 TGTAAAAAATAACCTACATGTGATGGTTCATTTTCA----TAAGTGCCTTAGAACATGTTTAAGCAGGC
i manLeu1.NW_012107142v1          C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             55047 21782 -   1829203 I
e macNem1.NW_012012100v1            120704 7855 +   1495729 I

a score=2585583.000000
s hg38.chr6_GL000254v2_alt         1313875 529 +   4827813 CACATGGAAACAAAGAGATAAAGAAGCAAAATATACTAAGCCACAATCCC----CTCCTTCCTGCTTTCCCTTTGACCCAGTGTCCAGGAGCCTA-CTGGTCAGGGCCCCCTCAATGACCCCCCTCCCCACCTCATCAAAGAATTTAGTTTGGGCTAGCTTGC------------------------CATCACCTAAGTGcagccactagggcggtaagtcaaatgctc--agagtcttgagacagtcgccatgcatt-atgggtggctgcaacaaaatgcagcaaaaaatgcagcaaaaagaccctaaagaacatacttgaagtcttaatacaactaccaataggcgatgcccaggaagactataaccccgtagtactcagctaatgaggaattggggaagggacttgcacactagggaagaaatagtttgttgaaactgtcccaggtgtacctgcactccagacacctgatcttgcaagactgtcattaaaagtctctctttcgctgttctctgggtctct----gagtctattttt--tgggtttgaatgggtgagtttctttc
s panTro5.chr6                    30184767 529 + 175400573 CACATGGAAACAAAGAGATAAAGAAGCAAAATATACTAAGCCACAATCCC----CTCCTTCCTGCTTTCCCTTTGACCCAGTGTCCAGGAGCCTA-TTGGTCGGGGGCCCCTCAATGACCCCCCTCCCCACCTCACCAAAGAATTTAGTTTGGGCTAGCTTGC------------------------CATCACCTAAGTAcagccactagggccataagtcaaatgctc--agagtcttgagacagtcgccatgcatt-atgggtggctgcaacaaaatgcagcaaaaaatgcagcaaaaagaccctaaagaacatacttgaagtcttaatacaactaccaataggcgatgcccaggaagactataaccccgtagtactcagctaatgaggaattgggggagggacttgcacactagggaagaaatagtttgttgaaactgtcccagatgtacctgcactccagacacctgatcttgcaagactgtcattaaaagtctctctttcgctgttctctgggtctct----gagtctattctt--tgggtttgaatgggtgagtttctttc
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30414582 529 + 173848474 CACATGGAAACAAAGAGATAAAGAAGCAAAATATACTAAGCCACAATCCC----CTCCTTCCTGCTTTCCCTTTGACCCAGTGTCCAGGAGCCTA-CTGGTCAGGGCCCCCTCAATGACCCCCCTCCCCACCTCACCAAAGAATTTAGTTTGGGCTAGCTTGC------------------------CATCACCTAAGTAcagccactagggccataagtcaaatgctc--agagtcttgagacagtcgccatgcatt-atgggtggctgcaacaaaatgcagcaaaaaatgcagcaaaaagaccctaaagaacatacttgaagtcttaatacaactaccaataggcgatgcccaggaagactataaccccgtagtactcagctaatgaggaattgggggagggacttgcacactagggaagaaatagtttgttgaaactgtcccagatgtacctgcactccagacacctgatcttgcaagactgtcattaaaagtctctctttcgctgttctctgggtctct----gagtctattctt--tgggtttgaatgggtgagtttctttc
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             69551 526 +   2037526 CACATGGAAACAAAGAGACAAAGAAGCAAAATATACTAAGCCACAATCCC----CTCCTTCCTGCTTTCCCTTTGACCCAGTGTCCAGGAGCCTA-CTGGTCAGGGCCCCCTCAATGACGCCCCTCCCCACCTCACCAAAGAATTTAGTTT-GGCTAGCTTGC------------------------CATCACCTAAGTGcagccactagggccataagtcaaatgctc--agagtcttgagacagtcgccatgcatt-atgggtagctgcaacaaaatgcagcaaaaaatgcagc-aaaagaccctaaagaacatacttgaagtcttaatacaactaccagtaggcgatgcccaggaagactataa-cccgtagtactcagctaatgaggaattgggggagggacttgcacactagggaagaaattgtttgttgaaactgtcccaggtgtccctgcactccagacacctggtcttgcaagactgtcattaaaagtctctctttcgctgttctctgggtctct----gagtctattctt--tgggtttgaatgggtgagtttctttc
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74750228 529 + 122973662 CACATGGAAACAAAGAGATAAAGAAGCAAAATATACTAAGACACAATCCC----CTACTTCCTGCTTTCCCTTTGACCCAGTGTCCAGGAGCCTATTTGGTCGGGGGCCCCTCAGTGATCCCCCTCCCCACCTCACCAAAGAATTTAGTTTGGGCTAGCTTGC------------------------CATCACCTAAGTGcagccaatagggccataagtcaaatgtttaaagagtcctgagacagtcgccatgcatt-atgg---gctgcaacaaaatgcagcaaaaaatgcagcaaacagaccctaaagaacacacttgaagtcttagtccaactaccaataggtgatgcccaggaagactataaccccatagtcctcagctaatgaggaattgggggagggacttgcacactagggaagaaattgtttgttgagactgtcccaggtgtgcctgtgctccagacacctgattttgcaagactgtcattaaaagtctgtcttttgctgttctctgggtctct----aagtctattctt--tgggtttgaatgggtgagtttctttc
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30574224 515 + 172585720 CCCATGGAAATAAAGAGATAAAGAAGCAAAATGTACTAAGCCACAATCCC----CTCCTTCCTGCTTTCCCTTTGACCCAGTGTCCAGGAGCTTA-TTGGTCGGGGCCCCTTCAATGACCCCCCTCCCCACCTCACCAAAGAATTTAGTTTGGGCTAGCTTGC------------------------CGTCACCCAAGTAcagccactacagccataagtcaaatgccaaaagagtcctgagacagtcaccaggcatt-atgg---gctgcaac------------aaaatgcagcaaaaagaccctgaagaacatacttgaaatcttaatccaactaccaataggcgatgcccaggaagactgtaaccccatagtattcagctaatgaggaattgggggagggacttgcacactagggaataaattgttttttgaaactctcccaggtgtgcctgcactccagacacctgatcttgcaagactgtcatt-aaagtctctctttcgctgttctctgggtctct----gagtctattctt--tgggtttgaatgggtgaatttctttc
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                    29945639 543 - 170955103 CACATGGACACAAAGAGATAAAAAAGCAAAATGTACTAAGCC---ATCCCCCAGCTCCTTCCTGCTTTCCTTTTCATGCACCAGCCAGGTGCCGA-TCAGTTGGGGCCCCCTCGACGA-TCCCCTCCCCACCTCACCAAATGATTTagtttaggctagcttgcaatgtagataattgtgccctttcttatcacctaaatgcagccattagggccataaattaaatgtttgaggagtcctgagacaatcgcaatgcatt-atgg---gctgcaac------------aaaatgcagcaaaaagactctaaagaacatacttgaagctttaatcaaacta-caataggcaacatccagaaagactgtaaccccacagtactcagctaatgaggaactgggggagggacatgggcactagggaataaattgtttgttgaaaccgtccctggtgtgtctgcattccagacacccgatactgcaaaattgttgctaaaagtctcactttcactgttctctgggtctctgagagagacagttctt--tgggtttggatgggtgagtttgtttc
i macFas5.chr4                    I 10 C 0
s macNem1.NW_012012100v1            128559 539 +   1495729 CACATGGACACAAAGAGATAAAAAAGCAAAATGTACTAAGCC---ATCCCCCAGCTCCTTCCTGCTTTCCTTTTCATGCACCAGCCAGGTGCCGA-TCAGTTGGGGCCCCCTCGACGA-TCCCCTCCCCACCTCACCAAATGATTTagtttaggctagcttgcaatgtagataattgtgccctttcttatcacctaaatgcagccattagggccataaattaaatgtttgaggagtcctgagacaatcgcaatgcatt-atgg---gctgcaac------------aaaatgcagcaaaaagactctaaagaacatacttgaagctttaatcaaacta-caataggcaacatccagaaagactgtaaccccacagtactcagctaatgaggaactgggggagggatgtgggcactagggaataaattgtttgttgaaaccgtccctggtgtgtctgcattccagacacccgatattgcaaaaccatcactcacagtctcacttttgctcttctccgggtctct----gagtccattctt--tgggtttggatgggtgagtttgtttc
i macNem1.NW_012012100v1          I 7855 I 2260
s cerAty1.NW_012002535v1            232583 528 -    863181 CACATGGAAATAAAGAGATAAAGAAGCAAAATGTACTAAGCCACAATCCC----CTCCTTCCCGCTTTCCCTTTGACCCAGTGTCCAGGAGCTTA-TTGGTCCGGGCCCCTTCAGTGACCCCCCTCCCCACCTCACCAAAGAATTTAGTTTGGGCTAGCTTGC------------------------CGTCACCTAAGTGcagccactacggccataagtcaaatgccaaaagagtcctgagacagtcaccaggcatc-atgg---gctgcaacaaaatgcagtaaaaaatgcagcaaaaagaccctgaagaacatacttgaaatcttaatccaactaccaataggcgatgcccaggaagactgtaaccccatagtattcagctaatgaggaattgggggagggacttgcacactagggaataaattgttttttgaaactgtcccaggtatgcctgcactccagacacctgatcttgcaagactgtcattaaaagtctctctttcgctgttctctgggtctct----gagtctattctt--tgggtttgaatgggtgaatttctttc
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    82049 528 -    117593 CACATGGAAATAAAGAGATAAAGAAGCAAAATGTACTAAGCCACAACCCC----CTCCTTCCTGCTTTCCCTTTGACCCAGTGTCCAGGAGCTTA-TTGGTCGGGGCCCCTTCAGTGACCCCCCTCCCCACCTCACCAAAGAATTTAGTTTGGGCTAGCTTGC------------------------CATCACATAAGTGcagccactacggccataagtcaaatgccaaaagagtcctgagacagtcaccaggcatt-atgg---gctgcaacaaaatgcagcaaaaaatgcagcaaaaagaccctgaagaacatacttgaaatcttaatccaactaccaataggcgatgcccaggaagactgtaaccccatagtattcagctaatgaggaattgggggagggacttgcacactagggaataaattgttttttgaaactgtcccaggtgtacctgcactccagacacctgatcttgcaaaactgtcattaaaagtctctctttcgctgttctctgggtctcc----gagtctattctt--tgggttttaatgggtgaatttctttc
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             30972 526 -    735854 CACATGGAAATAAAGAGATAAAGAAGCAAAATGTACTAAGCCACAACCCC----CTCCTTCCCGCTTTCCCTTTGACCCAGTGTCCAGGAGCTTA-TTGGTCGGGGCCCCTTCAGTGACCCCCCTCCCCACCTCACCAAAGAATTTAGTTTGGGCTAGCTTGC------------------------CATCACCTAAGTGcagccactacagccataagtcaaatgcc--aagagtcctgagacagtcaccaggcatc-atgg---gctgcaacaaaatgcagcaaaaaatgcagcaaaaagaccctgaagaacatacttgaaatcttaatccaactaccaataggcaatgcccaggaagactgtaaccccatggtattcagctaatgaggaattgggggagggacttgcacactagggaataaattgttttttgaaactgtcccaggtgtgcctgcactccagacacctgatcttgcaagactgtcattaaaagtctctctttcgctgttctctgggtctct----gagtctattctt--tgggtttgaatgggtgaatttctttc
i manLeu1.NW_012107142v1          C 0 C 0
s colAng1.NW_012115577v1             76829 541 -   1829203 CACATGGACATAAAGAGATAAAAAAGCAAAATGTACTAAGCC---ATCCCCCAGCTCCTTCCTGTTTTCCTTTTCATGCACCAGCCAGGTGCCGA-TCGGTTGGGGCCCCCTCGATGA-CTCCCTCCCCGCCTCACC-AAGAATTTagtttaggctagcttgcaacgtagataattgtaccctttcttatcatctaagtgcaaccattagggccataagtcacatgtttcaggagtcctgagacaatcccaatgcattaatgg---gctgcaac------------aaaatgcagcaaaaagactctaaagtacataatggaagccttaatcaaacta-taataggcaacatccagaaagactgtaaccccatagtactcagctaatgaggaactgggggagggacgtgggcactggggaataaattgtttgttgagaccgtccctggtgtgcctgcattccagacacccgatatcgcaaaactgtcgctaaaagtctcacttccactgttctttgtgtctct----gagtccatttttggggggtttggatgggtgagtttgtttc
i colAng1.NW_012115577v1          I 21782 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I

a score=17423.000000
s hg38.chr6_GL000254v2_alt         1314404 4 +   4827813 tcac
s panTro5.chr6                    30185296 4 + 175400573 tcac
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30415111 4 + 173848474 tcac
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             70077 4 +   2037526 tcac
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74750757 4 + 122973662 tcac
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30574739 4 + 172585720 tcac
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                    29946182 4 - 170955103 ctac
i macFas5.chr4                    C 0 C 0
s cerAty1.NW_012002535v1            233111 4 -    863181 tcac
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    82577 4 -    117593 tcac
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             31498 4 -    735854 tcac
i manLeu1.NW_012107142v1          C 0 C 0
s colAng1.NW_012115577v1             77370 4 -   1829203 ttac
i colAng1.NW_012115577v1          C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e macNem1.NW_012012100v1            129098 2260 +   1495729 I

a score=6006.000000
s hg38.chr6_GL000254v2_alt         1314408 1 +   4827813 a
s panTro5.chr6                    30185300 1 + 175400573 a
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30415115 1 + 173848474 a
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             70081 1 +   2037526 a
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74750761 1 + 122973662 a
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30574743 1 + 172585720 a
i rheMac8.chr4                    C 0 C 0
s macFas5.chr4                    29946186 1 - 170955103 a
i macFas5.chr4                    C 0 I 2280
s cerAty1.NW_012002535v1            233115 1 -    863181 a
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    82581 1 -    117593 a
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             31502 1 -    735854 a
i manLeu1.NW_012107142v1          C 0 C 0
s colAng1.NW_012115577v1             77374 1 -   1829203 a
i colAng1.NW_012115577v1          C 0 I 1239
s otoGar3.GL873550                17459830 1 -  18854210 A
i otoGar3.GL873550                N 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e macNem1.NW_012012100v1            129098 2260 +   1495729 I

a score=1638828.000000
s hg38.chr6_GL000254v2_alt         1314409 481 +   4827813 GGGATGTAGATGGCAACGTGGCTCTCATTCTCCTCCCAAATACCCCAACTTTCATCGCCTGTTCCAGAAGCCTTGTCACCTACAAGCCTATCTGCACAGAAG---GTATGAGGGGACCCTACAGCCCAGACAGGGACCCTCCCATCTCTAGCAACTGTCCCCTTTTCTCACCTGGACCCTCTGCACCTGATGTTGTCTtcttcttgcatcaaaggacacagagaatactactactaataataatactaatgatgatgaaagcagcaacagcagcaaCATATGGAATGGCTGGTCATCAACTCTGAAGCACCAGGACCATCCCTGAAAAAAAGGGCCTGTTACACACGGGGCACCCACAGCCACAGCTGTTCCTGCTGCCCCCACCCTGGCCTGATCCTCCTTATGTTGGAACCCTCAAGGGTGGTCCCAGGTTCACTAGAGGACACAGGGTGAGTGCTGTGATTCCTGCTGTATCCCATGGAGC
s panTro5.chr6                    30185301 481 + 175400573 GGGATCTAGATGGCAACGTGGCTCTCATTCCCCTCCCAAATACCCCAACTTTCATCGCCTGTTCCAGAAGCCTTGTCACCTACAAACCTATCTGCACAGAAG---GTATGAGGGGACCCTACAGCCCAGACAGGGACCCTCCCATCTCTAGCAACTGTCCCCTTTTCTCACCTGGACCCTCTGCACCTGATGTTGTCTTCTTCTTGCATCAAAGGACACAGAGaataataatactactaataatactgatgatgatGAAAACAGCAACAGCAGCAACATATGGAATGGCTGGTCATCAACTCTGAAGCACCAGGGCCATCCCTGAAAAAAAGGGCCTGTTACACACTGGGCACCCACAGCCACAGCCGTTCCTGCTGCCCCCACCCTGGCCTGATCCTCCTTATGTTGGAACCCTCAAGGGTGGTCCCAGGTTCACTAGAGGACACAGGGTGAGTGCTGTGATTCCTGCTGTATCCCATGGAGC
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30415116 481 + 173848474 GGGATCTAGATGGCAACGTGGCTCTCATTCCCCTCCCAAATACCCCAACTTTCATCGCCTGTTCCAGAAGCCTTGTCACCTACAAGCCTATCTGCACAGAAG---GTATGAGGGGACCCTACAGCCCAGACAGGGACCCTCCCATCTCTAGCAACTGTCCCCTTTTCTCACCTGGACCCTCTGCACCTGATGTTGTCTTCTTCTTGCATCAAAGGACACAGAGaataataatactactaataatactgatgatgatGAAAACAGCAACAGCGGCAACATATGGAATGGCTGGTCATCAACTCTGAAGCACCAGGGCCATCCCTGAAAAAAAGGGCCTGTTACACACTGGGCACCCACAGCCACAGCCGTTCCTGCTGCCCCCACCCTGGCCTGATCCTCCTTATGTTGGAACCCTCAAGGGTGGTCCCAGGTTCACTAGAGGACACAGGGTGAGTGCTGTGATTCCTGCTGTATCCCATGGAGC
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             70082 479 +   2037526 GGGATGTAGATGGCAACGTGGCTCTCATTCCCCTCCCAAATACCCCAACTTTCATCGCCTGTTCCAAAAGCCTTGTCACCTACAAGCCTATCTGCACAGAAG---GTATGA-GGGACCCTACAGCCCAGACAGGGACCCT-CCATCTCTAGCAACTGTCCCCTTTTCTCACCTGGACCCTCTGCACCTGACGTTGTCTTCTTCTTGCATCAAAGGACACAGAGaataataatactactaataatactaatgatgatGAAAGCAGCAACAGCAGCAACATATGGAATGGCAGGTCATCAACTCTGAAGCACCAGGGCCATCCCTGAAAAAAAGGGCCTGTTACACACTGGGCACCCACAGTCACAGCCGTTCCTGCCGCCCCCACCCTGGCCTGATCCTCTTTATGTTGGAACCCTCAAGGGTGGTCCCAGGTTCACTAGAGGACACAGGGTGAGTGCTGGGATTCCTGCTGTATCCCATGGAGC
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74750762 469 + 122973662 GGAGTGTAGATAGCAACGGGGCTCTCGTTCCTCTCCCAAATACCCCAACTTTCATCGCCTGTTCTAGAAGCCTTGTCACCTGCAAGCCTATCTGTACAAAAG---GTATGAGGGGACCCTACTGCCTAGACAGGGACCCTCCCATCTCTAGCAACTGTCCCCTTTTCTCACCTGCACCCTCTGCACCTGATGTTGTCTTCTTCTTGCATCAAAGGACACAGAGAA------------TAATAATACTAATGATGATGAAAGCAGCAACAGCAGCAACATATGGAATGGCTGGTCATCAACTCAGAAGCACCAGGGCCATTCCTGAAAAAAAGGGCCTGTTACACACTGGGCACCCATAGCCACAGCTGTTCCTGCTGCCCCCACCTTGGCCTGATCCTCCTTATGTTGGAACCCTCAAGGGTGGTCCCAGGTTCACTAGAGGACACGGAGTGAGTGCTGTGATTCCTGCTGTATCCCATGGAGC
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30574744 481 + 172585720 GGGGTGTAGATGGCAACGTGGCTCTCATTCCCCTCCCAAATACCCCAACTTTCATCGCCTGTTCCAGAAGCCTTGTCACCTACATGCCTATCTGTACAGAAG---GTATGAGGGGACCCTACTGCCCAGCCAGGGACCTTCCCATCTCTAGCAGCTGTCCCCTTTTCTGACCTGGACCCGCTGCACCTGATATTGTCTTCTTCTTGTATCAAAGGACACAGAGaataataatactaataataatactaatgatgatGAAAGCAGCAACAGCAGCAACATATGGAATGGCTTGTCATCAACTCTGAAGCACCAGGGCCATCCCTGGAAAAAAGGGCCTGTTACATACCAGGTACCCAAAGCCACAGTCGTTCCTGCTTCCCCCACCCCGGCCTGATCCTCCTTATGTTGGAACCCTCAAGGGTGGTCCCAGATTCACTAGAGGACACAAGGTGAGTGCTGTGATTCCTACTGTATCCGATGGAGC
i rheMac8.chr4                    C 0 C 0
s cerAty1.NW_012002535v1            233116 478 -    863181 GGGGTGTAGATGGCAACGTGGCTCTCATTCCCCTCCCAAATACCCCAACTTTCATCGCCTGTTCCAGAAGCCTTGTCACCTACATGCCTATCTGTACAGAAG---GTATGAGGGGACCCTACTGCCCAGCCAGGGACCTTCCCATCTCTAGCAGCTGTCCCCTTTTCTGACCTGGACCCGCTGCACCTGATATTg---tcttcttgtatcaaaggatgcggagaataataatactactaataatactaatgatgatgaaagcagcaacagcagcaaCATATGGAATGGCTTGTCATCAACTCTGAAGCACCAGGGCCATCCCTGGAAAAAAGGGCCTGTTACATACCAGGTACCCAAAGCCACAGTCATTCCTGCTTCCCCCACCCTGGCCTGATCCTCCTTATGTTGGAACCCTCAAGGGTGGTCCCAGGTTCACGAGAGGACACAAGGTGAGTGCTGTGATTCCTATTGCATCCGATGGAGC
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    82582 481 -    117593 GGGGTGTAGATGGCAACGTGGCTCTCATTCCCCTCCCAAATACCCCAACTTTCATCACCTGTTCCAGAAGCCTTGTCACCTACATGCCTATCTGTACAGAAG---GTATGAGGGGTCCCTACTGCCCAGCCAGGGACCTTCCCATCTCTAGCAGCTGTCCCCTTTTCTGACCTGGACCCGCTGCACCTGATATTGTCTTCTTCTTGTATCAAACGACACAGAGaataataatactactaataacactaatgatgatGAAAACAGCAACAGCAGCAACATATGGAATGGCTTGTCATCAACTCTGAAGCACCAGGGCCATCCCTGGAAAAAACGGCCTGTTACATACTGGGTACCCAAAGCCACAGTTGTTCCTGCTTCCCCCACCCTGGCCTGATCCTCCTTATGTTGGAACCCTCACGGGTGGTCCCAGGTTCACTAGAGGACACATGGTGAGTGCTGTGATTCCTACTGTATCCGATGGAGC
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             31503 481 -    735854 GGGGTGTAGATGGCAACGTGGCTCTCATTCCCCTCCCAAATACCCCAACTTTCATCACCTGTTCCAGAAGCCTTGTCACCTACATGCCTATCTGTACAGAAG---GTATGAGGGGACCCTACTGCCCAGCCAGGGACCTTCCCATCTCTAGCAGCTGTCCCCTTTTCTGACCTGGACCCGCTGCACCTGATATTGTCTTCTTCTTGTATCAAAGGATGCGGAGaataataatactactaataatactaatgatgatGAAAGCAGCAACAGCAGCAACATATGGAATGGCTTGTCATCAACTCTGAAGCATCAGGGCCATCCCTGGAAAAAACAGCCTGTTACATACCAGGTACCCAAAGCCACAGTCGTTCCTGCTTCCCCCACCCTGGCCTGATCCTCCTTATGTTGGAACCCTCAAGGGTGGTCCCAGGTTCACGAGAGGACACAAGGTGAGTGCTGTGATTCCTACTGTATCCGATGGAGC
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17459831 451 -  18854210 GGGATAGAGATGGAGATGTGGCTCCTGCTA-CCTCCCAAATTCCCTGACTTCCACCCTCTGCTCCAGAAGGCCCATCACCTACACTCCTGTCTACGCAGTAGAACACAGGAGGAGACCCGCTTCCCCAGACAGGGGCACTTCCATCTCTAGCCCCTG--CCTCTTTCTTACCTGGACCTCTGGCAGCTGA---TGTCCTCTTCTTGTATCAAAAGACACACACCACAGCC---------------------------AAGGCAATAACAAGGGCAGTACACAGAATGGCTAGCCGGTGACTCCGAGGCCTCGGGGCATTCCCTGAGAAAAGGGCCTCATCAGACCCAGGACACCCACAGCCACAGACTTCTTTGCTCTCCCAGCCCCAGCCCAGCCCTCCCTGGGACAGAAGCCTCCAGGGTCACCCAAGGCTCACCAGAGAGCACAGTATGAGTGCTCTGATTCCTGCTGTGTCCCATGTAGC
i otoGar3.GL873550                C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             77375 1239 -   1829203 I
e macNem1.NW_012012100v1            129098 2260 +   1495729 I
e macFas5.chr4                    29946187 2280 - 170955103 I

a score=590190.000000
s hg38.chr6_GL000254v2_alt         1314890 187 +   4827813 AGATGACCCTCTGCTCCTCTCCTTGGGGAATCCTGCAGGCCACCTCTGTCTGGTAGGTCCCATCCCATTGGACAGAACACCCCAA-GACTGCTGGGCATCCTGGCTCAAAGACGCCCCATCCTGTCACCAGGTCAGAGAGATATTCTGGAGATACAAGCCAGAGCCCAGCATATCAGGGTGATGTTGC
s panTro5.chr6                    30185782 187 + 175400573 AGATGACCCTCTGCTCCTCTCCTTGGGGAATCCTGCAGGCCACCTCTGTCTGGTAGGTCCCATCCCATTGGACAGAACACCCCAA-GACTGCCGGGCATCCTGGCTCAAAGACGCCCCATCCTGTCACCAGGTCAGAGAGATATTCTGGAGATACAAGCCAGAGCCCAGCATATCAGGGTGATGTTGC
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30415597 187 + 173848474 AGATGACCCTCTGCTCCTCTCCTTGGGGAATCCTGCAGGCCACCTCTGTCTGGTAGGTCCCATCCCATTGGACAGAACACCCCAA-GACTGCCGGGCATCCTGGCTCAAAGACGCCCCATCCTGTCACCAGGTCAGAGAGATATTCTGGAGATACAAGCCAGAGCCCAGCATATCAGGGTGATGTTGC
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             70561 188 +   2037526 AGATGACCCTCTGCTCCTCTCCTTGGGGAATCCTGCAGGCCACCTCTGTCTGGTAGGTCCCATCCCATTGGACAGAACACCCCAAGGACTGCTGGGCATCCTGGCTCAAAGACGCCCCATCCTGTCACCAGGTCAGAGAGATATTCTGGAGATACAAGCCAGAGCCCAGCATATCAGGGTGATGTTGC
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74751231 186 + 122973662 AGATGACCCTCTGCTCCTCTCCTTGGGGAATCCTGCAGGCCACC-CCGTCTGGTAGGTCCCATCCCATTGGACAGAACACCCCCA-GACTGCTGGGCATCCTGGCTCAAATATGTCCCATCCTGACACCAGGTCAGAGAGATATTCTGGAGATAGAAGCCAGAGCCCAGCATATCAGGGTGATATTGC
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30575225 186 + 172585720 AGATGACCCTCTGCTCCTCTCCTTGGGGAATCCTGCAGGCCACCTCTGTCTGGTAGGTCCCATCCCA-TGGACAGAATACCCCCA-GACTGCTGGGCATCCTGGCTCAAAGACGCCCCATCCTGACACCAGGTCAGAGAGATATTCTGGAGATAGAAGCCAGAGCCCAGCATATCAGGGTCATGTTGC
i rheMac8.chr4                    C 0 C 0
s cerAty1.NW_012002535v1            233594 186 -    863181 AGATGACCCTCTGCTCCTCTCCTTGGGGAATCCTGCAGGCCACCTCTGTCTGGTAGGTCCCACCCCA-TGGACAGAATACCCCCA-GACTGCTGGGCATCCTGGCTCAAAGATGCCCCATCCTGACACCAGATCAGAGAGATATTCTGGAGATAGAAGCCAGAGCCCAGCATATCAGGGTCATGTTGC
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    83063 186 -    117593 AGATGACCCTCTGCTCCTCTCCTTGGGGAATCCTGCAGGCCACCTCTGTCTGGTAGGTCCCACTCCA-TGGACAGAATACCCCCA-GACTGCTGGGCATCCTGGCTCAAAGACGCCCCATCCTGACACCAGACCAGAGAGATATTCTGGAGATAGAAGCCAGAGCCCAGCATATCAGGGTCATGTTGC
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             31984 186 -    735854 AGGTGACCTTCTGCTCCTCTCCTTGGGGAATCCTGCAGGCCACCTCTGTCTGGTAGGTCCCACCCCA-TGGACAGAATACCCCCA-GACTGCTGGGCATCCTGGCTCAAAGACGCCCCATCCTGACACCAGATCAGAGAGATATTCTGGAGACAGAAGCCAGAGCCCAGCATATCAGGGTCATGTTGC
i manLeu1.NW_012107142v1          C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e otoGar3.GL873550                17460282   0 -  18854210 C
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             77375 1239 -   1829203 I
e macNem1.NW_012012100v1            129098 2260 +   1495729 I
e macFas5.chr4                    29946187 2280 - 170955103 I

a score=2918000.000000
s hg38.chr6_GL000254v2_alt         1315077 844 +   4827813 CCTCCAGGGCCTCACTGCAGGCCACACTCATGGTGGAGGAGGGGGGGACTGGAGAAGAAAGGGCAGAGACAATGAGGCACATGGCCAAACCCTGCTCCCCTCTAATGGAGATGCAGGGAACAGGGCTGGTCCGCTCCACTGCTCCGACTCTGGCAGAAGTCCTCACGGACCCCAGACCTTCTGCAAGTCTGTCCTCACCCTGGGGACCAATTCCTCAAGGCTGGC----AGAAGGATGGGCCTCGAGACTGTGTCTTTATGCTCTGGGATCCCTGCATTGATGCTGAGGAGGGGAATGTCAGGGGTGGGCTCCTGGTACATGGGGCCAGAGGGAACTCTTTGGGATGGGCAGGCTGGGAAGCAGATGGGGCAG-CCTTGGCCCTGGGGGCTTCCTCTCCTGCCTGACACCCACC---CAGGTTCAGGCTTCTGTCAAAGGGCCCACTGCTTCCCCAGATTGTGACACTGGACCCTTCAATCCCTGACCCACTGTCTTTTTCCAGTGGCTCTAACAGGAGAGAAAAATCAGGATATAACACACCAACAGAAAACACATGCATCCATAGCACAAGGAGGGTTTCCCT-GGACAGAGTTGGGGGTCGGGGTGACTCTAGTGGAATAGGGGAGAGGAAAGCCCCTACCCAGGCCCAGTACCTGCTCTCCTGACACCCACACAGGATTCCAGATACTGCTGTAGTTTCTGCCTGCAGTCTACCCATATAGGGTGAGAGTGTGTCTCGGCCGGCATAGCATCTTCCTTCTAGAAATTTGTGATGTTCATAGCAAAGGTCTGAGTTCTGGAGGACTGGGATACTGTCCATTCCTGAGTCTCCAGGTTGAGAGAGAGGAAG
s panTro5.chr6                    30185969 844 + 175400573 CCTCCAGGGCCTCACTGCAGGCCACACTCATGGTAGAGGAGTGGGGGACTGGAGAAGAAAGGGCAGAGACAATGAGGCACATGGCCAAACCCTGCTCCCCTCTAATGGAGATGCAGGGAACAGGGCTGGTCCGCTCCACTGCTCCGACTCTGGCAGAAGTCCTCACGGACCCCAGACCTTCTGCAAGTCTGTCCTCACCCTGGGGACCAATTCCTCAAGGCTGGC----AGAAGGATGGGCCTCGAGACTGTGTCTTTATGCTCTGGGATCCCTGCATTGATGCTGAGGAGGGGAATGTCAGGGGTGGGCTCCTGGTACATGGGGCCAGAGGGAACTCTTTGGGATGGGCAGGCTGGGAAGCAGATGGGGCAG-CCTTGGCCCTGGGGGCTTCCTCTCCTGCCTGACACCCACC---CAGGTTCAGGCTTCTGTCAGAGGGCCCACTGCTTCCCCAGATTGTGACACTGGACCCTTCAATCCCTGACCCACTGTCTTTTTCCAGTGGCTCTAACAGGAGAGAAAAATCAGGATATAACACACCAACAGAAAACACATGCATCCATAGCACAAGGAGGGTTTCCCT-GGACAGAGTTGGGGGTAGGGGTGACTCTAGTGGAATAGGGGAGAGGAAAGCCCCTACCCAGGCCCAGTACCTGCTCTCCTGACACCCACACAGGATTCCAGATACTGCTGTAGTTTCTGCCTGCAATCTACCCATATAGGGTGAGAGTGTGTCTCGGCCGGCATAGCATCTTCCTTCTAGAAATTTGTGATGTTCATAGCAAAGGTCTGAGTTCTGGAGGACAGGGATACTGTCCATTCCTGAGTCTCCAGGTTGAGAGAGAGGAAG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30415784 844 + 173848474 CCTCCAGGGCCTCACTGCAGGCCACACTCATGGTAGAGGAGCGGGGGACTGGAGAAGAAAGGCCAGAGACAATGAGGCACATGGCCAAACCCTGCTCCCCTCTAATGGAGATGCAGGGAACAGGGCTGGTCCGCTCCACTGCTCCGACTCTGGCAGAAGTCCTCACGGACCCCAGACCTTCTGCAAATCTGTCCTCACCCTGGGGACCAATTCCTCAAGGCTGGC----AGAAGGATGGGCCTCGAGACTGTGTCTTTATGCTCTGGGATCCCTGCATTGATGCTGAGGAGGGGTATGTCAGGGGTGGGCTCCTGGTACATGGGGCCAGAGGGAACTCTTTGGGATGGGCAGGCTGGGAAGCAGATGGGGCAG-CCTTGGCCCTGGGGGCTTCCTCTCCTGCCTGACACCCACC---CAGATTCAGGCTTCTGTCAGAGGGCCCACTGCTTCCCCAGATTGTGACACTGGACCCTTCAATCCCTGACCCACTGTCTTTTTCCAGTGGCTCTAACAGGAGAGAAAAATCAGGATATAACACACCAACAGAAAACACATGCATCCATAGCACAAGGAGGGTTTCCCT-GGACAGAGTTGGGGGTCGGGGTGACTCTAGTGGAATAGGGGAGAGGAAAGCCCCTACCCAGGCCCAGTACCTGCTCTCCTGACACCCACACAGGATTCCAGATACTGCTGTAGTTTCTGCCTGCAGTCTACCCATATAGGGTGAGAGTGTGTCTCGGCCGGCATAGCATCTTCCTTCTAGAAATTTGTGATGTTCATAGCAAAGGTCTGAGTTCTGGAGGACTGGGATACTGTCCATTCCTGAGTCTCCAGGTTGAGAGAGAGGAAG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             70749 842 +   2037526 CCTCCAGGGCCTCACTGCAGGCCACACTCATGGTGGAGTAGGGGGGGACTGGAGAAGAAAGGGCAGAGACAATGAGGCACATGGTCAAACCCTGCTCCCCTCTAATGGAGATGCAGGGAACAGGGCTGGTCCGCTCCACTGCTCCGACTCTGGCAGAAGTCCTCACGGACCCCAGACCTTCTGCAAGTCTGTCCTCACCCTGGGGACCAATTCCTCAAGGCTGGC----AGAAGGATGGGCCTCGAGACTGTGTC-TTATGCTCTGGGATCCCTGCATTGATGCTGAGGAGGGGAATGTCAGGGGT-GGCTCCTGGTACATGGGGCCAGAGGGAACTCTTTGGGATGGGCAGGCTGGGAAGCAGATGGGGCAG-CCTTGGCCCTGGGGGCTTCCTCTCCTGCCTGACACCCACC---CAGGTTCAGGCTTCTGTCAGAGGGCCCACTGCTTTCCCAGATTGTGACACTGGACCCTTCAATCCCTGACCCACTGTCTTTTTCCAGTGGCTCTAACAGGAGAGAAAAATCAGGATATAACACACCAACAGAAAACACATGCATCCATAGCACAAGGAGGGTTTCCCT-GGACAGAGTTGGGGGTCGGGGTGACTCTAGAGGAATAGGGGAGAGGAAAGCCCCTACCCAGGCCCAGTACCTGCTCTCGTGACACCCACACAGGATTCCAGATACTGCTGTAGTTTCTGCCTGCAGTCTACCCATATAGGGTGAGAGTGTGTCTCGGCTGGCATAGCATCTTCCTTCTAGAAATTTGTGATGTTCATAGCAAAGGTCTGAGTTCTGGAGGACTGGGATACTCTCCATTCCTGAGTCTCCAGGTTGAGAGAGAGGAAG
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74751417 836 + 122973662 CCTCCAGGGCCTCACCGCGGGTCACATTCATGGTGGAGGAGGGGGGTACTGGAGAAGAAAGGGCAGAGACAATGAAGC-------CAAACCCTGCTCCCCTCTAATGGAGATACAGGGAACAGGGCTGGTCCACTCCACTGCTCTGACTCTGGCAGAAGTCCTCATGGACCCCAGACCTtctgcaagtctgtcatcaccctgggaaccaattcctctaggctggc----agaAGAATGGGCCTCGAGACTGTGTCTTTATGCTCTGAGATCCCTGCATTGATGCTGTGGAGGGGAATGTC-GGGGTGGGCTCCTGGTACGTGGGGCCAGAGGGAACTCTTTGGGATGGGCAGGCTGGGAGGCAGATGGGGCAG-CCTTGGCCCTGGGGGCTTCCTCTCCTGCCTGACACCCACC---CAGGTTCAGGCTTCTGTCAGAAGGCCCACTGCTTCCCCAGATTATGACACTGGACTCTTCAATCCCTGACCCACTGTCTTTTTCCAGTGACTCTAACAGGAGAGAAAAATCAGGATATAACACACCAACAGAAAACACATGCATCCATAGCACAAGGAGGGTTTCCCT-GGACAGAGCTGGGGGTCGGGGTGACTCTAGTGGAATAGGGGAGAGGAAAGCCCCTACCCAGGCCCAGTACCTGTTCTCCTGACACCCACACAGGATTCCAGATACTGCTGTAGTTTCTGCACGCAGTCTACCCATATAGGGAGAGAGTGTGTCTTGGTCTGCATAGCATCTTCCTTCTAGAAATTTTTGATGTTCATAGCAAAGGTCTGAGCTCTGGAGGACTGAGATACTGTCCATTCCTGAGTCTCCAGGTTGAAAGAGAGGAAG
i nomLeu3.chr1a                   C 0 I 10224
s rheMac8.chr4                    30575411 838 + 172585720 CCTCCAGGGCCTTGCTGCGGGTCACATTCATGGTGGGGGAG-GGGAGGCTGGAGAAGAAAGGGCAGAGACAATGAGGCACGTGGCCAAACCCTGCTCCCCTCTAATGGAGATGCAGGGAACAGGGCTGGTCCACTCCACTGTTCCAACTCTGGCAGAAGTCCTCACAGACCCCAGACCCTCTGCAAGTCTGTCCTCACCCTGGGGCCCAATTCCTCTAGGCTGGC----AGGAGGATGGGCCTCGAGAC--TGTCTTTACGCTCTGTGATCCCTGCACTGATGCTGAGGAGGGGAAGGTCAGGCGTGGGCTCCTGGTATGTGGGGTCAGA-GGAAATCTTTGGGATGGGCAGGCTGGGAGGCAGATGGGGCAG-CCTTGGCCCT-GGGGCTTCCTCTCCTGCCTGACACCTACC---CAGGTTCAGGTTTCTGTCAGAGGGCCCACTCCTTCCCCAGATTATGACACTGGACTCTTCAATCCTTGACCTGCTGTCTTTTTCCAGTGGCTCTAACAGGAGAGAAAAATCAGGATATAACACACCAACAGAAAACACATGCATCCATAGCACAAGGAGAGTTTCCCT-GGATGAAGCTGGAGGTAGGGGTGACTCTAGTGGAATAGTGGAGAGGAAAGCCCCTACCCAGGCCAAGTACCTGTTCTCCTGACACCCACACAGGATTCCAGATGC-ACTGTAGTTTCTGCCTGAAGTCTGCCCATACAGGGCGGGAGTGTATCTTGGCCTGCATAGCATCTTCCTTCTAGATATTTGTGATGTTCGTAgcaaaggtctgagctctggaggactgggaaactgtccattcctGAGTCTCCAGGTTGAGAGAGAGGAAG
i rheMac8.chr4                    C 0 C 0
s cerAty1.NW_012002535v1            233780 839 -    863181 CCTTCAGGGCCTCGCTGCAGGTCACATTCATAGTGGGGGAG-GGGAGGTTGGAGAAGAAAGAGCAGAGACGATGAGGCACGTGGCCATACCCTGCTCCCCTCTATTGGAGATGCAGGGAACAGGGCTGGTCCACTCCACTGTTCCAACTCTGGCAGAAGTCCTCACGGACCCCAGACCTTCTGCAAGCCTGTCCTCACCCTGGGGCCCAGTTCCTCTAGGCTGGC----AGGAGGATGGGCCTCCAGACTGTGTCTTTATGCTCTGGGATCCCTGCACTGATGCTGAGGAGGGGAAGGTCAGACGTGGGCTCCTGGTACGTGGGGCCAGA-GGAACTCTTTGGGATGGGCAGGCTGGGAGGCAGATGGGGCAG-CCTTGGCCCT-GGGGCTTCCTCTCCTGCCTGACACCCACC---CAGGTTCAGGCTTCTGTGAGAGGGCCCACTGCTTCCCCAGATTATGACACTGGACTCTTCCATCCTTGAACCCCTGTCTTTTTCCAGTGGCTCTAACAGGAGAGAAAAATCAGGATATAACACACCAACAGAAAACACATGCATCCATAGCACAAGGAGAGCTTCCCT--GACGGAGCTGGAGGTAGGGGTGACTCTAGTGGAATAGCGGAGAGGAAAGCCCCTACCCAGGCCCAGTACCTGTTCTCCTGACACCCACACGGGATTCCAGATGC-ACTGTAGTTTCTGCCCGAAGTCTGCCCATACAGGGCGGGAGTGTGTCTCGGCCTGCAGAGCATCTTCCTTCTAGATATTTGTGATGTTCATAGCAGAGGTCTGAGCTCTGGAGGACTGGGATACTGTCCATTCCTGAGTCTCCAGGTTGAGAGAGAGGAAG
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    83249 839 -    117593 CCTCCAGGGCCTCGCTGCGGGTCACATTCATGGTGGGGGAG-GGGAGACTGGAGAAGAAAGGGCAGAGACAATGAGGCACGTGGCCAAACCCTGCTCCCCTCTAATGGAGATGCAGGGAACAGGGCTGGTCCACTCCACTGTTCCAACTCTGGCAGAAGTCCTCATGGACCCCAGACCTTCTGCAAGTCTGTCCTCACCCTGGGGCCCAGTTCCTCTAGGCTGGC----AGAAGGATGAGCCTCGAGACTGTGTCTTTATGCTCTGGGACCCCTGCATTGATGATGAGGAGGGGAAGGTCAGGGTTGGGCTCCTGGTACATGGGGCCAGA-GGAACTCTTTGGGATGGGCAGGCTGGGAGGCAGATGGGGCAG-CCTTGGCCCT-GGGGCTTCCTCTCCTGCCTGACACCCACC---CAGGTTCAGGCTTCTGTCAGAGGGCCCACTGCTTCCCCAGATTATGACACTGGACTCTTCAGTCCTTGAGCCCCTGTCTTTTTCCAGTGGCTCTAACAGGAGAGAAAAATCAGGATATAACACACCAACAGAAAATACTTGCATCCATAGTACAAGGAGAGTTTCCCT--GACAGAGCTGGAGGTAGGGGTGACTCTAGTGGAACAGCGGAGAGGAAAGCCCCTACCCAGGCCCAGTGCCTGTTCTCCGGACACCCACACAGGATTCCAGATGC-ACTGTAGTTTCTGCCCGAAGTCTGCCCATACAGGGCGGGAGTGTGTCTCAGCCTGCATAGCATCTTCCTTCTAGATATTTGTGATGTTCATAGCAGAGGTCTGAGCTCTGGAGGACTGGGATACTGTCCATTCCTGAGTCTCCAGGTTGAGAGAGAGGAAG
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             32170 839 -    735854 CCTCCAGGGCCTCACTGCAGGTCACATTCATGGTGGGGGAG-GGGAGGTTGGAGAAGAAAGAGCAGAGACAATGAGGCACGTGGCCAAACCCTGCTCCCCTCTATTGGAGATGCAGGGAACAGGGCTGGTCCACTCCACTGTTCCAACTCTGGCAGAAGCCCTCACGGACCCCAGACCTTCTGCAAGCCTGTCCTTACCCTGGGGCCCAGTTCCTCTAGGCTGGC----AGAAGGATGGGCCTTGAGACTGTGTCTTTATGCTCTGGGATCCCTGCATTGATGCTGAGGAGGGGAAGGTCAGGCGTGGGCTCCTGGTACGTGGGGCCAGA-GGAACTCTTTGGGATGGGCAGGCTGGGAGGCAGATGGGGCAG-CCTTGGCCCT-GGGGCTTCCTCTCCTGCCTGATACCCACC---CAGGTTCAGGCTTCTGTGAGAGGGCCCACTGTTTCCCCAGATTATGACACTGGACTCTTCAGTCCTTGAACCCCTGTCTTTTTCCAGTGGCTCTAACAGGAGAGAAAAATCAGGATATAACACACCAACAGAAAACACTTGCATCCGTAGCACAAGGAGAGTTTCCCT--GACGGAGCTGGAGGTAGGGGTGACTCTAGTGGAATAGCGGAGAGGAAAGCCCCTACCCAGGCCCAGTCCCTGTTCTCCTGACACCCACACGGGATTCCAGATGC-ACTGTAGTTTCTGCCCGAAGTCTGCCCATACAGGGCGGGAGTGTGTCTTGGCCTGCATAGCATCTTCCTTCTAGATATTTGTGATGTTCAGAGCAGAGGTCTGAGCTCTGGAGGACTGGGATACTGTCCATTCCTGAGTCTCCAGGTTGAGAGAGAGGAAG
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17460282 798 -  18854210 CATCCAAGACCTGACTGTGGGTCACATTTACTGTCG------GGGCTACTGAAGAAGGAAGAGGAGAGGCAGTGAGACCCAGGGCCAAGCCCTGCTCCCCTCCACAGGAGACACAGGGAGCAGGCTGGGTCCTC-CCACTGTTCCCACCCGGCCTAAAGCCCTCACTGATCCCAGGCCTTCTGTAAGCCC-------TCCTAGGTCCCAATTCCTCAAGACTGGCAAGAAAGAGGAAGGGCCTTGGGAAGGTCGTCTAATGCCCTCAGGTCCCTGTGCTGATGCTGAGGAGGAGGATGTCAGGGGTGGGCTCCTGGGCCATGGGCCAGGA-GGGACTCTCCATGACAGGCAGGCTGGGATGCAGAGAGGACGGCCCCCGGCTCT-GAGGGCTGCTCTCCTGTCTGACACCCACCTCTCAGGTGCAGGCTTCTGTCAGAGGGCCCACTGCCTTCTCAGATTATGACACTAAATACTTCAGTCTCTGACCCATTGTCTTGAGCCAGTGGCTTTAACAGGAGAAGCTAATCAGAACACAATACACCAACAGA----ATGTGCAGCCACAGTACAGGAAGGG--TCCTTGGGACAGAGCTGGGGGT-GGGGTGACTCCTGCAGAA----------------------CTAGGTC-AGCACCTGCTCTCCTGAAGCCCATCCTGGAGTCCAGATATCGCTGTAGCTTCTGCACACAGTCTGCCAGCACAGCGTCGGGGCGTGT---------CATGGCATCTTCATCCCAGACCTTCCGGATGTTCATTGCCAAGGTGTGAGCTCCTGAGGACGGGGGCACTATCTGCTTCTGAGTCTTCAGGTTCTGGGATAAGAAG
i otoGar3.GL873550                C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             77375 1239 -   1829203 I
e macNem1.NW_012012100v1            129098 2260 +   1495729 I
e macFas5.chr4                    29946187 2280 - 170955103 I

a score=3805003.000000
s hg38.chr6_GL000254v2_alt         1315921 1080 +   4827813 AGCTACCCATAAGAGTAGGAATGCCTAGAGCCCCTGGTGCTGCTGGCTTCCT-GATCTCACAACCCCTAATCTCCTGGAGGGAATGCAAGGCTACCCCCACCC--------AGCAGT-------------------------------TCCAAGTGAGGAACTCAGACCAGAGGAGACCCCTCCCTGGCCCTCCTCCATGCCTTTCTGTGTGGGCTGAGTGCCAGGTTACCTCCCCGCCGAGCTCTGCTGACCCCTATTCCTCACCCCTACCC---CCAGCCAGATCCAGTGGGGACAGACAGGTCCCTGCTCTCTGCCCCCAGCTCTCCTGGAAAAGGT--CTCCCATCACTCTTGCCTGCTGCCACCTCTCACCTCCCTTCTGTCCCTTGATATATGCCAGGGCCCTTCTGAGGTCCTGCCCATTCTCTGTcaagtcctcagtctctgtgtcccaggtctcagctcccagAACTGCTTCTGCCCACTGTCCCCGGGACCCAGCCCTGCCTTTCTGCCTGTTGAAGAGCAGGAA----------GGGCTGACCATCCAGATGTCCCTCAGCAAGAAACCCTGACTGCACAGATCCATCCCGGGACAGCACCGTGAGGTTGTAATGAAGACTGTGGGGCCCTGGGGAACAAGAAACCACAGATGAAACTTCTTCCTGGAAGTAACTTCACATTGATGTTTAACACACAGGTCTGCTGTCTCAACCTTTCTGAGGAGGCAGGAAATGTACATATGCAAAGGGACAAGAATGAGGATTTCAGATACAAGGAAAACTGggagggcaggaggatggaggagcagactgaggaacagaagaagggggaATGGAGATGGCAAACATGTAGGCCAGCTGCCAAGGCAGGGTGGCCACAGGCCACCTAAGGGTATAGGG--AGGAGGCCAAGGAGAGAGGCTGCCCTGCAGTGGTGAGGGAGGAGCACGAAGG-CAGTGGTGGAAGGAAGGTCTTGCCAGAGGGGAGGGTGGAAATGGGAAGGGACCCAGGCTCAGAGGGACCCATGACCAGCATGGCTGTGCTACACAGGTG----AGGGTGAGATGGAG-TCGCGGGCCGCTGCCTTTGAGGAAGGCTCATCATGTACAAGATGGGAGTAAGGGAGGAT
s panTro5.chr6                    30186813 1080 + 175400573 AGCTACCCATAAGAGTAGGAATGCCTAGAGCCCCTGGTGCTGCTGGCTTCCT-GATCTCACAACCCCTAATCTCCTGGAGGGAATGCAAGGCTACCCCCACCC--------AGCAGT-------------------------------TCCAAGTGAGGAACTCAGACCAGAGGGGACCCCTCCCTGGCCCTCCTCCATGCCTTTCTGTGTGGGCTGAGTGCCAGGTTACCTCCCCGCCGAGCTCTGCTGACCCCCATTCCTCACCCCTACCC---CCAGCCAGATCCAGTGGGGACAGACAGGTCCCTGCTCTCTGCCCCCAGCTCTCCTGGAAAAGGC--CTCCCATCACTCTTGCCTGCTGCCAACTCTCACCTCCCTTCTGTCCCTTGATATATGCCAGGGCCCTTCTGAGGTCCTGCCCATTCTCTGTcaagtcctcagtctctgtgtcccaggtctcagctcccagAACTGCTTCTGCCCATTGTCCCCGGGACCCAGCCCTGCCTTTCTGCCTGTTGAAGAGCAGGAA----------GGGCTGACCATCCAGATGTCCCTCAGCAAGAAACCCTGACTGCACAGATCCATCCCGGGACAGCACCGTGAGGTTGTAATGAAGACTGTGGGGCCCTGGGGAACAAGAAACCACAGATGAAACTTCTTCCTGGGAGTAACTTCACATTGATGTTTAACACACAGGTCTGCTGTCTCAACCTTTCTGAGGAGGCAGGAAATGTACATATGCAAAGGGACAAGAATGAGGATTTCAGATACAAGGAAAACTGggagggcaggaggatggaggagcagactgaggaacagaagaagggggaATGGAGATGGCAAACATGTAGGCCAGGTGCCAAGGCAGGGTGGCCACAGGCCACCTAAGGGTATAGGG--AGGAGGCCAAGGAGAGAGGCTGCCCTGCAGTGGTGAGGGAGGAGCACGAAGG-CAGTGGTGGAAGGAAGGTCTTGCCAGAGGGGAGGGTGGAAATGGGAAGGGACCCAGGCTCAGAGGGACCCATGACCAGCATGGCTGTGCTACACAGGTG----AGGGTGAGATGGAG-TCGCGGGCCGCTGCTTTTGAGGAAGGCTCATCATGCACAAGATGGGAGTAAGGGAGGAT
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30416628 1080 + 173848474 AGCTACCCATAAGAGTAGGAATGCCTAGAGCCCCTGGTGCTGCTGGCTTCCT-GATCTCAAAACCCCTAATCTCCTGGAGGGAATGCAAGGCTACCCTCACCC--------AGCAGT-------------------------------TCCAAGTGAGGAACTCAGACCAGAGGGGACCCCTCCCTGGCCCTCCTCCATGCCTTTCTGTGTGGGCTGAGTGCCAGGTTACCTCCCCGCCGAGCTCTGCTGACCCCCGTTCCTCACCCCTACCC---CCAGCCAGATCCAGTGGGGACAGACAGGTCCCTGCTCTCTGACCCCAGCTCTCCTGGAAAAGGC--CTCCCATCACTCTTGCCTGCTGCCAACTCTCACCTCCCTTCTGTCCCTTGATATAAGCCAGGGCCCTTCTGAGGTCCTGCCCATTCTCTGTcaagtcctcagtctctgtgtcccaggtctcagctcccagAACTGCTTCTGCCCATTGTCCCCGGGACCCAGCCCTGCCTTTCTGCCTGTTGAAGAGCAGGAA----------GGGCTGACCATCCAGATGTCCCTCAGCAAGAAACCCTGACTGCACAGATCCATCCCGGGACAGCACCGTGAGGTTGTAATGAAGACTGTGGGGCCCTGGGGAACAAGAAACCACAGATGAAACTTCTTCCTGGGAGTAACTTCACATTGATGTTTAACACACAGGTCTGCTGTCTCAACCTTTCTGAGGAGGCAGGAAATGTACATATGCAAAGGGACAAGAATGAGGATTTCAGATACAAGGAAAACTGggagggcaggaggatggaggagcagactgaggaacagaagaagggggaATGGAGATGGCAAACATGTAGGCCAGGTGCCAAGGCAGGGTGGCCACAGGCCACCTAAGGGTATAGGG--AGGAGGCCAAGGAGAGAGGCTGCCCTGCAGTGGTGAGGGAGGAGCACGAAGG-CAGTGGTGGAAGGAAGGTCTTGCCAGAGGGGAGGGTGGAAATGGGAAGGGACCCAGGCTCAGAGGGACCCATGACCAGCATGGCTGTGCTACACAGGTG----AGGGTGAGATGGAG-TCGCGGGCCGCTGCCTTTGAGGAAGGCTCATCATGTACAAGATGGGAGTAAGGGAGGAT
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             71591 1075 +   2037526 AGCTACCCATAAGAGTAGGAATGCCTAGAGCCCCTGGTGCTGCTGGCTTCCT-GATCTCAAAACCCCTAATCTCCTGGAGGGAATGCAAGGCTACCC-CACCC--------AGCAGT-------------------------------TCCAAGTGAGGAACTCAGACCAGAGGGGACCCCTCCCTGGCCCTCCTCCATGCCTTTCTGTGT-GGCTGAGTGCCAGGTTACCTCCCCGCCGAGCTCTGCTGACCCC-ATTCCTCACCCCTACCC---CCAGCCAGATCCAGTGGGGACAGACAGGT-CCTGCTCTCTGCCCCCAGCTCTCCTGGAAAAGGC--CTCCCATCACTCTTGCCTGCTGCCAACTCTCACCTCCCTTCTGTCCCTTGATATATGCCAGGGCCCTTCTGAGGTCCTGCCCATTCTCTGTcaagtcctcagtctctgtgtcccaggtctcagctcccagAACTGCTTCTGCCCACTGTCCCTGGGACCCAGCCCTGCATTTCTGCCTGTTGAAGAGCAGGAA----------GGGCTGACCATCCAGATGTCCCTCAGCAAGAAACCCTGACTGCACAGATCCATCCCGGGACAGCACCGTGAGGTTGTAATGAAGACTGTGGGGCCCTGGGGAAGAAGAAACCACAGATGAAACTTCTTCCTGGAAGTAACTTCACATTGATGTTTAACACACAGGTCTGCTGTCTCAACCTTTCTGAGGAGGCAGGAAATGCACATATGCAAAGGGACAAGAATGAGGATTTCAGATACAAGGAAAACTGggagggcaggaggatggaggagcagactgaggaacagaagaagggggaATGGAGATGGCAAACATGTAGGCCAGGTGCCAAGGCAGGGTGGCCACAGGCCACCTAAGGGTATAGGG--AGGAGGCCAAGGAGAGAGGCTGCCCTGCAGTGGTGAGGGAGGAGCACGAAGG-CTGTGGTGGAAGGAAGGTCTTGCCAGAGGGGAGGGTGGAAATAGGAA-GGACCCAGGCTCAGAGGGACCCATGACCAGCATGGCTGTGCTGCACAGGTG----AGGGTGAGATGGAG-TCGCGGGCCGCTGCCTTTGAGGAAGGCTCATCATGTACAAGATGGGAGTAAGGGAGGAT
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74762477 1093 + 122973662 AGCTACCCCTAGGAGTAGGAATGCCTAAAGCCCCTGGTGCTGCTGGCTTCCT-GATCTCACAAACCCTAATCTCCTGGAGGGAATGCAAGGTTACTCCCACCC--------AGCAGTGACT---------------TCTCCATTCCAGTCCAAGTGAGGAACTCAGACCCGAGGGGAACCCTCCCTGGCCCTCCTCCATGCCTTTCTGTGTGGGCTGAGTGCCAGCTTACCTCCCCGCTGAGCTCTGCTGACCCCCATTCCTCACCGCTACCC---CCAGCCAGATCCAGTGGGAATAGACAGGTCCCTGCTCTCTGCCCCCAGCTCTCCTGGAAAAGGC--TTCCCAGCACTCTTGCCCGCTGCCAACTCTCACCTCCATTCTGGCCTTTGATACATGCCAGGGCCCTTC-GAGGTCCTGCCCGTTCTCTGTCAAGTCCTCAG--TCTGTGTCCCAGGTCTCAGCTCCCAGAACTTCTTCTGCCCACTGTCCCCAGGACCCAGCCCTGCCTTTCTGCCTGTTGAAGAGCAGGAA----------GCGCTGACCATCATGATGTCCCTCAGTGAGAAACCCTGACTGCACAGATCCATCCCAGGACAGCAACGTGAGGTTGTAATGAAGGCTGTGGGGCCCTGGGGAAGAAGAAACCACAGATGAAGCTTCTTCCTGGAAGTAACTTCACATTGATCTTTAACACACAGGTCTGCTGTCCCAACCTTCCTGAGGAGGCAGGAAATGCACAGAGGTAAAGGGACAAGAATGAGGATTTCAGATACAAGGAAAACTGGGAGGGCAGGAGGATGGAGGAGTGGACTGAGGAACGGAAGAAGGGGCAATCGAGATGGCAAACATGCAGGCCAGGTGCCAAGGCAGGGTGGCCACAGGCCACCTAAGGGTATAGGG--AGGAGGCCAAGGAGAGAGGCTGCCCTGCAGTGGTGAGGGAGGAGCACGAAGG-CAGTGGTGGAAGGAAGGTCTTGCCTGAGGGGAGGGTGGAAATGGGAAGGGACCCAGGCTCAGGGTGACCCATGACCAGCATGGCTATGCTGCACAGGTG----AGGGTGAGATGGAA-TTGAGGGCTGCTGCCTTTGAGGAAGGCTCATCGTGGACAAGATGGGAGTAAGGGAGCGT
i nomLeu3.chr1a                   I 10224 C 0
s rheMac8.chr4                    30576249 1107 + 172585720 AGCTACCCATAAGAGTAGGAATGCCTAAAGCCCCTGGTGCTGCTGGCTTCCT-GATCTCACAAACCCTAATCTCCTGGAGGGAATGCAAGTCTACCCCCACCC--------AGCAGTGACT---------------TCTCCATTCCAGTCCAAGTGAGGAACTCAGACCAGAGGGGACCCCTTGCTGGCCCTCCTCCATGCCTTTCTGTGTGGGCTGAGTGCCGGCTCACCTCCCCGCTGAGCTCCGCTGACCCCCATTCCTCACCCCTACCC---CCAGCCAGATCCAGTGGGAACAGACAGGTCCCTGCTCTCTGCCCCCAGCTCTCCTGGAAAAGGCCTCTCCCATCACTCTTGCCCGCTGCCTACTCTCACCTCCTTTCTGGCCCTTGATATATGCCAGGGCCCTTCTGAGGTCCTGCCCGTTCTCTGTcaagtcctcagtctctgtgtcccaggtctcagctcccagAACTGCTTCCACCCACTGTCCCCGGGACCCAGCCCTGCCTTTCTGCCTGTTGAAGAGCAGGAAGATGTCCCTGGATCTGACCATCCAGATGTCCCTCAGCGAGAAACCCTGACTGCACAGATCCATCCCGGGACAGCACTGTGAGGTTGTAATGAAGACTGTGGGGCTCTGGGGAAGAGGAAACCACAGATGAAACTTCTTCCTGGAAGCAACTTTACATTGAAG-TTAACACACAGGTCTGCGGTCCTGACCTTCCTGAGGAGGCAGGAAATGCACACAGGCAAAGGGACAAGAATGAGGATTTTAGATACAAGGAAAACTGGGAGGGCAGGAGGATGGAGGAGTGGACTGAGGAACGGAAGATGGGGGAATGGAGATGGCAAACATGTAGGCCAGGTGCCAAGGCGGGGCAGCCACAGGCCACCTAAGGGTATAGGG--AGGAGGCCAAGGAGAGAGGCTGCCCTGCAGTGGTGAGGGAGGAGCATGAGGA-CAGTGGTGGAAGGAAGGTTTTGCCAGAGAAGAGGGTGGAAACAGGAAGGGACCCAGGCTCAGGGTGACCCATGACCAGCATGGCTGTGCTGCACAGGTG----AGGGTGAGATGGAG-TCGAGGGCCGCTGCCTTTGAGGAAGGCTCATCGTGGACAAGGTGGGAGTAAGGGAGGGT
i rheMac8.chr4                    C 0 C 0
s cerAty1.NW_012002535v1            234619 1097 -    863181 AGCTACCCATAAGAGTAGGAATGCCTAAAGCCCCTGGTGCTGCAGGCTTCCT-GATCTCACAAACCCTAATCTCCTGGAGGGAATGTAAGTCTACCCCCACCC--------AGCAGTGACT---------------TCTCCATTCCAGTCCAACTGAGGAACTCAGACCACAGGGGACCCCTTGCTGGCCCTCCTCCATGCCTTTCTGTGTGGGCTGAGTGCCGGCTCACCTCCCCACTGAGCTCCGCTGACCCCCATTCCTCACCCCTACCC---CCAGCCAGATCCAGTGGGAACAGACAGGTCCCTGCTCTCTGCCCCCAGCTCTCCTGGAAAAGGCCTCTCCCATCACTCTTGCCCGCTGCCTACTCTCACCTCCTTTCTGGCCCTTGATATATGTCAGGGCCCTTCTGAGGTCCTGTCCGTTCTCTGtcaggtcctcagtctctgtgtcccaggtctcagctcccagAACCGCTTCCGCCCACTGTCCCTGGGACCCAGCCCTGCCTTTCTGCCTGTTGAAGAGCAGGAA----------GGGCTGACCATCCAGATGTCCCTCAGCGAGAAACCCTGACTGCACAGATCCATCCCGGGACAGCACTGTGAGGTTGTAATGAAGACTGTGGGGCCCTGGGGAAGAGGAAACCACAGATGAAACTTCTTCCTGGAAGCAACTTTACTTAGAAG-TTAACACACAGGTCTGCGGTCCCGACCTTCCTGAGGAGGCAGGAAATGCACATGGGCAAAGGGACAAGAATGAGGATTTTAGATACAAGGAAAACTGGGAGGGCAGGAGGATGGAGGAGCGGACTGAGGAACAGAAGATGGGGGAATGGAGATGGCAAACATGCAGGCCAGGTGCCAAGGCAGAGCAGCCACAGGCCACCTAAGGGTATAGGG--AGGAGGCCAAGGAGAGAGGCTGCCCTGCAGTGGTGAGGGAGGAGTATGAAGG-CAGTGGTGGAAGGAAGGTCTTGCCAGAGAAGAGGGTGGAAACAGGAAGGGACCCAGGCTCAGGGTGACTCATGACCAGCATGGCTGTGCTGCACAGGTG----AGGGTGAGATGGAG-TCGAGGGCCGCTGCCTTTGAGGAAGGCTCATCATGGACAAGGTGGGAGTAAGGGAGGGT
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    84088 1097 -    117593 AGCTACCCATAAGAGTAGGAATGCCTAAAGCCCCTGGCGCTGCTGGCTTCCT-GAACTCACAAACCCTCATCTCCTGGAGGGAATGCAAGTCTACCCCCACCC--------AGCAGTGACT---------------TCTCCATTCCAGTCCAAGTGAGGAACTCAGACCAGAGGGGACCCCTTGCTGGCCCTCCTCCATGCCTTTCTGTGTGGACTGAGTGCCGGCTCACCTCCCCGCTGAGCTCCGCTGACCCCCATTCCTCACCCCTACCC---CCAGCCAGATCCAGTGGGAACAGACAGGTCCCTGCTCTCTGCCCCCAGTTCTCCTGGAAAAGGCCTCTCCCATCATTCTTGCCCGCTGCCTACTCTCCCCTCCTTTCTGGCCCTTGATATATGCCAGGGCCCTTCTGAGGTCCTGCCCGTTCTCTGTCAAGTCCTCAGTCTCTTTGTCCCAGATCTCAGCTCCCAGAACCGCTTCTGCCCACTGTCCCCAGGACCCAGCCCTGCCTTTCTGCCTGTTGAAGAGCAGGAA----------GAACTGACCATCCAGATGTCCCTCAGCAAGAAACCCTGACTGCACAGATCCATCCCAGGACAGCCCTGTGAGGTTGTAATGAAGACTGTGGGGCCCTGGGGAAGCAGAAACCACAGATGAAACTTCTTCCTGGAAGCAACCTTACTTAGAAG-TTAACACACAGGTCTGCTGTCCCGACCTTCCTGAGGAGGCAGGAAATGCACACAGGCAAAGGGACAAGAATGAGGATTTTAGACACAAGGAAAACTGGGAGGGCAggaggatggaggagcggactgaggaatggaagttgggggaatggagatggCAAACATGTAGGCCAGGTGCCAAGGCGGGGAAGCCACAGGCCACCTAAGGGTATAGGG--AAGAGGCCAAGGAAAAAGGCTGCCCTGCAGTGGTGAGGGAGGAGCATGAAGG-CAGTGGTGGAAGGAAGGTCTTGCCAGAGAAGAGGGTGGAAATGGGAAGGGACCCAGGCTCAGGGGGACCCATGACCAGCATGGTTGTGCTGCACAGGTG----AGGGTGAGATGGAG-TCGAGGGCCGCTGCCTTTGAGGAAGGCTCATCATAGACAAGGTGGGAGTAAGGGAGGGT
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             33009 1097 -    735854 AGCTACCCATAAGAGTAGGAATGCCTAAAGCCCCTGGTGCTGCTGGCTTCCT-GATCTCACAAACCCTAATCTCCTGGAGGGAATGTAAGTCTACACCCACCC--------AGCAGTGACT---------------TCTCCATTCCAGTCCAAGTGAGGAACTCAGACCACAGGGGACCCCTTGCTGGCCCTCCTCCATGCCTTTCTGTGTGGGCTGAGTGCCGGCTCACCTCCCTGCTGAGCTCCGCTGACCCCCATTCCTCACCCCTACCA---CCAGCCAGATCCAGAGGGAACAGACAGGTCCCTGCTCTCTGCTCCCAGCTCTTCTGGAAAAGGCCTCTCCCATCACTTTTGCCCGCTGCCTACTCTCACCTCCTTTCTGGCCCTTGATATATGCCAGGGCCCTTCTGAGGTCCTGCCCGTTCTCTGTCAAGTCCTCAGTCTCTGTGTCCCAGATCTCAGCTCCCAGAACCACTTCTGCCCACTGTCCCCGGGACCCAGCCCTGCCTGTCTGCCTGTTGAAGAGCAGGAA----------GGTCTGACCATCCAGATGTCCCTCAGCGAGAAACCCTGACTGCACAGATCCATCCCGGGACAGCACTGTGAGGTTGTAATGAAGACTGTGGGGCCCTGGGGAAGAGGAAACCACAGATGAAACTTCTTCCTGGAAGCAACTTTACATCAAAG-TTAACACACGGGTCTGCGGTCCCGACCTTCCTGAGGAGGCACGAAATGCACACAGGCAAAGGGACAAGAATGAGGATTTTAGATACAAGGAAAACTGGGAGGGCAggaggatggaggagtggactgaggaacggaagatgggggaatggggatggCAAACATGGAGGCCAGGTGCCAAGGCGGGGCAGCCACAGGCCACCTAAGGGTATAGGG--AGGAGGCCAAGGAGAGAGGCTGCCCTGCAGTGGTGAGGGAGGAGCATGAAGG-CAGTGGTGGAAGGAAGGTCTTGCCAGAGAAGAGGGTGGAAATGGGAAGGGACCCAGGCTCAGGGTGACCCATGACCAGCATGGCTGTGCTGCACAGGTG----AGGGTGAGATGGAG-TTGAGGGCCGCTGCCTTTGAGGAAGGCTCATTGTGGACAAGGTGGGAGTAAGGGAGGGT
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17461080 1092 -  18854210 AGCTCCCCATCATAGTAGAAATGCCTGAAGCCACTGGTGCTGTTGTCTTCATGGATCTCACATTCCGTTATCTCCTGCAGCGAATGCCGGGCTGCCCCCAACCCTGCCAGAAGCAATGTCTCAGTTCCCTGAACCCCTTGCCTTCTCATCCCAGGGAGAAATGCAGCCCAGAGGGGACCCATCCCTAACTCTCCTTC-TGTCCTCCTGTGCTGGCTGAGGACT------CTCTCACACTAAACTCCACTGACCCT--GTCCTCACCCTTTCCCCTTCCATCCAGATCCAGCAGGAAGAGACAG------TCTCTCTGCCCTCAAAT---CTAGAAAAGGC--CC-----CACCCTTGCCCCCTGCCCACTCTTACCT---TTCTGGCCTATGATTTGTGCCAGGGTCATCCTGAGGTCCTTCCCGTTCTCTCTCATGTCCTTGGTCTCTGTGTCCCAGACCTCAATTCCCAGGGATGCTTTTGCCCAGGGCCCCTGGGGCTCTGCCCTGCCTTTCTTCCCAT---AGAGCAGGAA----------GCGCTCACCATCCAGATGCCCCTCAGCGAAAAACTTTGATGACACAGATCCATGCTGGGACACTACTGTGAGGTTATAACGAAGACTGTGGGACCCTGGGGAAGAGCAAACCACAGATGAAACCTCTTCCTGGAAATAACTTCATGTCAGTGTCTAACAGAT---TCTGCCTCCCTGACCTTCGTGGGGATGCAGAAAACACGCATGGGCAAACAGGTAAGAATGAGGATTTCAAATGCAAGGAAAATGGGGAAAGTGGAAAGATGGAGAAGAGGACTAAGGAATGGGAGA--GGGGGATGGAGATGGCAAGGACATCAACCAGCTGTCATGGCAGGGTGGCCACATTTTCCCTGAAGGTGTATGGGCAGGAGGTC-AGGAGAGAGGCCGCCCTGCAGGGGGCACAGGGGAGCATAGAGGCCAGCAGTGGGAGGAAGGTCTGGCCAGAGGGGAGGA-GGGAATGTGCAGGGACTCAGGCTTAGAGGGACCCCTGACCTGAGCAGCTGTGGTGCACAGGCGGGCTAGGGTGCAATTGAGAGTGATGGGGGCAGCCTCTGGGGAAGGGTCAGCACTGATCAAGGGGG---AAGGGAGGAT
i otoGar3.GL873550                C 0 I 44108
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             77375 1239 -   1829203 I
e macNem1.NW_012012100v1            129098 2260 +   1495729 I
e macFas5.chr4                    29946187 2280 - 170955103 I

a score=801398.000000
s hg38.chr6_GL000254v2_alt         1317001 256 +   4827813 CAGTGCAtcttttcaagaaacagtgccaggaaaac--gacattcacatgcaaaaagaaatgaagttggactcctgacttacaccacatatacaagttaactctaaataaatcaaagacctacactcaggaactaaaactgaaaaattcttagaatgaaacattgggaataatcttcatgacataggttttgacaacacttttatggatacaacaccaaagcacagacaacaaagaaaaaattgataagttggacccat
s panTro5.chr6                    30187893 256 + 175400573 CAGTGCAtcttttcaagaaacagtgccaggaaaac--gacattcacatgcaaaaagaaatgaagttggactcctgacttacaccacatatacaagttaactctaaataaatcaaagacctacactcaggaactaaaactgaaaaattcttagaatgaaacattgggaataatcttcatgacataggttttgacaacacttttatggatataacaccaaagcacagacaacaaagaaaaaattgataacttggactcat
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30417708 256 + 173848474 CAGTGCAtcttttcgagaaacagtgccaggaaaac--gacattcacatgcaaaaagaaatgaagttggactcctaacttacaccacatatacaagttaactctaaataaatcaaagacctacactcaggaactaaaactgaaaaattcttagaatgaaacattgggaataatcttcatgacataggttttgacaacacttttatggatataacaccaaagcacagacaacaaagaaaaaattgataagttggactcat
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             72666 256 +   2037526 CAGTGCAtcttttcaagaaacagtgccaggaaaac--gacattcacatgcaaaaagaaatgaagttggactcctgacttacaccacatatacaagttaactctaaataaatcaaagacctacactcaggaactaaaactgaaaaattcttagaatgaaacattgggaataatcttcatgacataggttttgacaacacttttatggatataacaccaaagcacagacaacaaagaaaaaattgataagttggactcat
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74763570 258 + 122973662 CAGTGCAtcttttcaagaaacagtgccaggaaaaccagacattcacatgcaaaaagaaatgaagttgggctcctgtcttacaccacatatacaagttaactctaaataaatcaaagacctacactcaggaactaaaactgaaaaattcttagaatgaaacattgggaataatcttcatgacataggttttgacaatacttttatggatataacaccaaagcacagacaacaaagaaaaaattgataagttggactcat
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30577356 258 + 172585720 CAGTGCAtcttttcaagaaacagtgctaggaacactggacgttcacatacaaaaagaaatgaagttggactcctaacttacaccacatatacaagttaactccaaataaatcaaagacctatactcaggaactaaaactgaaaagttattagaatgaaacattgggaataatcttcatgacataggttttgacaacacatttatggatataacaccaaagcacagataacaaagaaaaaattggtaggttggactcat
i rheMac8.chr4                    C 0 C 0
s cerAty1.NW_012002535v1            235716 258 -    863181 CAGTGCAtcttttcaagaaacagtgctaggaacactggacgttcacatacaaaaagaaatgaagttggactcctaacttacaccacatatacaagttaactccaaataaatcaaagacctatactcaggaactaaaactgaaaagttattagaatgaaacattgggaataatcttcatgacataggttttgacaacacatttatggatataataccaaagcacagacaacaaagaaaaaattggtaggttggactcat
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    85185 258 -    117593 CAGTGCAtcttttcaagaaacagcgctaggaacactggacgatgacatacaaaaagaaatgaagttggactcctaacttacaccacatatacaagttaactccaaataaatcaaagacctatactcaggaactaaaactgaaaaattcttagaatgaaacactgggaataatcttcatgacataggttttgacaacacatttatggatataacaccaaagcacagacaacaaagaaaaaattggtaggttggactcat
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             34106 258 -    735854 CAGTGCAtcttttcaagaaatagtgctaggaacactagacgttcacatacaaaaagaaatgaagttggactcctaacttacaccacatatacaagttaactccaaataaatcaaagacctatactcaggaactaaaacagaaaaattcttagaatgaaacactgggaataatcttcatgacataggttttgacgacacatttatggatataacaccaaagtacagacaacaaagaaaaaaatggtaggttggactcat
i manLeu1.NW_012107142v1          C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e otoGar3.GL873550                17462172 44108 -  18854210 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             77375 1239 -   1829203 I
e macNem1.NW_012012100v1            129098 2260 +   1495729 I
e macFas5.chr4                    29946187 2280 - 170955103 I

a score=518279.000000
s hg38.chr6_GL000254v2_alt         1317257 177 +   4827813 caaaat---aaaaaaaattgagcattaaaaaacacaatctgcagagtgaaaaagcaa-ccattagaatggaagaaaatatttgcaaatcatttatctaataaaagatta--atatccagaatacat----aaagaattcctgtaacacaaacataa--------------gact--caaaaaaactatgtaggcaaagaattt
s panTro5.chr6                    30188149 177 + 175400573 caaaat---aaaaaaaattgagcattaaaaaacacaatctgcagagtgaaaaagcaa-ccattagaatggaagaaaatatttgcaaatcatttatctaataaaagatta--atatccagaatacat----aaagaattcctgtaacacaaacataa--------------gact--caaaaaaactatgtaggcaaagaattt
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30417964 177 + 173848474 caaaat---aaaaaaaactgagtattaaaaaacacaatctgcagagtgaaaaagcaa-ccattagaatggaagaaaatatttgcaaatcatttatctaataaaagatta--atatccagaatacat----aaagaattcctgtaacacaaacataa--------------gact--caaaaaaactatgtaggcaaagaattt
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             72922 177 +   2037526 caaaat--aaaaaaaaattgagcattaaaaaacacaatctgc-gagtgaaaaagcaa-ccattagaatggaagaaaatatttgcaaatcatttatctaataaaagatta--atatccagaatacat----aaagaattcctgtaacacaaacataa--------------gact--caaaaaaactatgtaggcaaagaattt
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74763828 179 + 122973662 caaaat---aaaaaaaactgagcattaaaaaacacaatctgcagagtaaaaaggcaa-ccatcagaatggaagaaaatatttacaaatcatatatctaataaaagatta--atatccagaatacat----aaagaactcctgtaacacaaacataa--------------gactaaaaaaaaaactatgtaggcaaagaattt
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30577614 178 + 172585720 caaaat--aaaaaaaaattgagcattaaaaaacacaatctgcagagtgaaaaagcag-ccaccagaatggaagaaaatatttgcaaatcatatatctaataaaagatta--atatccagaatacat----aaagaactcctataacacaaacacaa--------------gact--caaaaaaactgtgtaggcaaagaattt
i rheMac8.chr4                    C 0 C 0
s cerAty1.NW_012002535v1            235974 175 -    863181 caaaat--aaaaaaaaattgagcattaaaaaacacaatctgcagagtgaaaaagcag-ccaccagaatgtaaggaaatatttgcaaatcatatatctaataaaagattaatatatctaaa----aa----aaagaactcctataacacaagcacaa--------------gact--c-aaaaaactgtgtaggcaaagaattt
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    85443 155 -    117593 caaaataaaaaaaaaaattgagcatttaaaaacacaatctgcagagtgaaaaagcag-ccaccagaatggaagaaaatatttgcaaataa---------------------------agaatacat----aaagaactcctataacacaagcacaa--------------gact--caaaaaaactgtgtaggcaaagaattt
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             34364 173 -    735854 caaaattaaaaaaaaaattgagcattaaaaaacacaaactgcagagtgaaaatgcag-ccaccggaatggaagaaaatatttgcaaatcatatatctaataaaagatta--atacccagaatacat----aaaggactcctataactcaagca-----------------------caaaaaaactgtgtaggcaaagaattt
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17506280 187 -  18854210 Caaagt-----aaaaacgtgtgcctcaaaggacacaatcaagggaatgaaaaagcaattccccctaacagaagaaaatatttgcaagtcacctatctgataaataatta--atacccagaatatatgtacaaagaactcttacaattcaaaaatgacaaaacattctacccatt--caaaaa-------tgggcaaaggaggt
i otoGar3.GL873550                I 44108 I 281
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             77375 1239 -   1829203 I
e macNem1.NW_012012100v1            129098 2260 +   1495729 I
e macFas5.chr4                    29946187 2280 - 170955103 I

a score=653020.000000
s hg38.chr6_GL000254v2_alt         1317434 258 +   4827813 gaatagccaattctccgaagaagacatacaaatggccaatagacacatgaaaagatgctcaacatctgtagttattagggaaatgcaaatcaaaactgcaatgggctactacttcacaccaattaggatggctataatcaa------------------acacacacacacacacacacgcacac----acagagagagagagagagagagagagagagagaaagcaagtttggcaaagaggtaga-gaaactggaacatttgtgtagtacattgggaaag
s panTro5.chr6                    30188326 236 + 175400573 gaatagccaattctctgaagaagacatacaaatggccaatagacacatgaaaagatgctcaacatcagtagttattagggaaatgcaaatcaaaactgcaatgggctactacttcacaccaataaggatggctataatcaa------------------acacacacacacacacac--gcaca------------------------gagagagagagagaaagcaagtttggcaaagaggtaga-aaaactggaatgtttgtgtagtacattgggaaag
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30418141 246 + 173848474 gaatagccaattctccgaagaagacatacaaatggccaatagacacatggaaagatgctcaacatctgtagttattagggaaatgcaaatcaaaaccgcagtgggctactacttcacaccaattaggatggctataatcaa------------------acacacacacacacacacacacacac----acacaga------------gagagagagagagaaagcaagtttggcaaagaggtaga-aaaactggaacgtttgtgtagtacattgggaaag
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             73099 241 +   2037526 gaatagccaattctccgaagaagacatacaaatggccaatagacacgtgaaaagatgctcaacatcagtagttattagggaaatgcaaatcaaaaccgcaatgggctactacttcacaccaattaggatggctataatcaa------------------acacacacacacacacacacgcacac----a------------------gagagagagagagaaagcaagtttggcaaagaggtagagaaaactggaacgtttgtgtagtacattgggaaag
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74764007 245 + 122973662 gaatagccaattctccaaagaagatatacaaatggccaatagacacatgaaaagatgctcaacatcagtagttattagggaaatgcaaatcaaaaccacaatgggctactacttcacaccaattaggatggctataaacaa------------------acacacagacacacacacacacacac----acacacacaca--------cacagagagagagagagaaagtttggcaaacaggtgtagtacattgggaaa--tatgtagtacattggg----
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30577792 248 + 172585720 gaatagccagctctccaaagaagatatacaaatggccaatagacacatgaaaatatgctcaacatcagtagttattagggaaatgcaaatcaaaaccacaatgggctactatttcacaccaactaggatggctataatcaa------------------acacacacacacgtacacacacacac----acacacaca----------cacacagagagaaacagcaagtctgggaaagaggtaga-gaaactagaatgtctgtgtactacattgggaaag
i rheMac8.chr4                    C 0 C 0
s cerAty1.NW_012002535v1            236149 248 -    863181 gaatagccagttctctaaagaagatatacaaatggccaatagacacatgaaaatatgctcaacatcagtagttattagggaaatgcaaatcaaaaccacaatgggctactacttcacaccaactaggatggctataatcaa------------------acacacacacacgtacacacacacac----agagagaga----------gagagagagagaaacagcaagtctggcaaagaggtaga-gaaactagaatgtctgtgtactacattgggaaag
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    85598 250 -    117593 gaatagccagttctccaaagaagatatacaaatggccaatagacacatgaaaatatgctcaacatcagtagttattagggaaatgcaaatcaaaactacaatgggctactacttcacaccaactaggatggctataatcaa--------------------acacacacatgtacacacacagagagaaagacagaga----------gagagagagagaaacagcaagtttggcaaagaggtaga-gaaactagaatgtctgtgtactacattgggaaag
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             34537 270 -    735854 gaatagccaattctccaaagaagatatacaaatggccaatagacacatgaaaatattctcaacatcagtagttatgaggaaaatggaaatcaaaaccacaatgggctactacttcacaccaactaggatggctataatgaaacacacacacacacgtatacacacacacatacacatacacacacagagagagagaga----------gagagagagagaaacagcaagtttagcaaagaggtaga-gaaactagaatgtctgtgtgctacattgggaaag
i manLeu1.NW_012107142v1          C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e otoGar3.GL873550                17506467 281 -  18854210 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             77375 1239 -   1829203 I
e macNem1.NW_012012100v1            129098 2260 +   1495729 I
e macFas5.chr4                    29946187 2280 - 170955103 I

a score=340802.000000
s hg38.chr6_GL000254v2_alt         1317692 113 +   4827813 acaaagtgaggcacctgctatggaaatcagtgtgttgcttcctcc-----aaaaactaaaaaattaattact---atgtaatcca--------gaaattctacatctgggtatttacccaaaagaaatg
s panTro5.chr6                    30188562 113 + 175400573 acaaagtggggcacctgctatggaaatcagtgtgttgcttcctcc-----aaaaactaaaaaattaattact---atgtaatcca--------gaaattctacatctgggtatttacccaaaagaaatg
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30418387 113 + 173848474 acaaagtggggcacctgctatggaaatcagtgtgttgcttcctcc-----aaaaactaaaaaattaattact---atgtaatcca--------gaaattctacatctgggtatttacccaaaagaaatg
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             73340 113 +   2037526 acaaagtggggcacctgctatggaaatcagtgtgttgcttcctcc-----aaaaactaaaaaattaattact---aagtaatcca--------gaaattctacatctgagtatttacccaaaagaaatg
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74764252 111 + 122973662 --aaagtggggcacctgctatggaaatcagtaggttgtttcctcc-----aaaaactaaaaaattaattact---atgtgatcca--------gaaattctacatctgggtatttacccaaaagaaatg
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30578040 113 + 172585720 acaaaatggggcacctgctatggaaatcagtgtgttgattcctcc-----aaaaactaaacaatgaattacc---atatgatcca--------gaaattctacaacagggtatttacccaaaagaaatg
i rheMac8.chr4                    C 0 C 0
s cerAty1.NW_012002535v1            236397 113 -    863181 acaaaatggggcacctgctatggaaatcagtgtgttggttcctcc-----aaaaactaaacaatgaattacc---atacgatcca--------gaaattctacatctgggtatttacccaaaagaaatg
i cerAty1.NW_012002535v1          C 0 C 0
s chlSab2.chr17_KE148042v1_random    85848 113 -    117593 acaaaatggggcacctgctatggaaatcagcgtgttggttcctcc-----aaaaactaaacaatgaattacc---atatgatcca--------gaaattctacaactgggtatttacccaaaagaaatg
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             34807 113 -    735854 acaaaatggggcacctgctatggaaatcagtgtgttggttcctcc-----aaaaactaaacaatgaattacc---atacgatcca--------gaaattctacatctgggtatttacccaaaagaaatg
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17506748 129 -  18854210 acggagagagacactatctttaaaaaaaaaaaaaaaaaTCCTTCCCTTGGAAAAaaaaaaaaattaagttctgacacgtgctacaacatggatgaaccttgaaaacattatggtaagtcaaataaacca
i otoGar3.GL873550                I 281 T 41625
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             77375 1239 -   1829203 I
e macNem1.NW_012012100v1            129098 2260 +   1495729 I
e macFas5.chr4                    29946187 2280 - 170955103 I

a score=440549.000000
s hg38.chr6_GL000254v2_alt         1317805 138 +   4827813 aaagcaggaacattaaaa-agatatttgaacactcatgttcatagcagcataattcccaatagccaaattcata-gagacagaaagtagaaccagtggttccagcggccagggggaaggaggaatggggagctactgttt
s panTro5.chr6                    30188675 138 + 175400573 aaagcaggaacattaaaa-atatatttgaacactcatgttcatagcagcataattcccaatagccaaattcata-gagacagaaagtagaaccagtggttccaggggccagggggaaggaggaatggggagctactgttt
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30418500 138 + 173848474 aaagcaggaacattaaaa-atatatttgaacactcatgttcatagcagcataattcccaatagccaaattcata-gagacagaaagtagaaccagtggttccaggggccagggggaaggaggaatggggagctactgttt
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             73453 138 +   2037526 aaagcaggaacattaaaa-agatatttgaacactcatgttcatagcagcataattcccaatagccaaattcataggggacagaaagtagaaccagtggttccaggggccagggggaa-gaggaatggggagctactgttt
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74764363 136 + 122973662 aaagcaggaacattaaga-agatatttgaaaactcatgttcatagcagcataattcccaatcaccaaattcata-gagacagaaagtagaa-cagtggttccaggggtt-gggggaaggaggaatggggagctactgttt
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30578153 136 + 172585720 aaagca-gaacattaaaa-agatatttgaacactcatgttcatagcagcataattcccaatagccgaattcata-gagacagaaagtagaa-cagtggtttcaggggccagggggaaggaggaatggggagttactgttt
i rheMac8.chr4                    C 0 C 0
s cerAty1.NW_012002535v1            236510 136 -    863181 aaagca-gaacattaaaa-agatatttgaacactcatgttcacagcagcacaattcccaatagccaaattcata-gagacagaaagtagaa-cagtggtttcaggggccagggggaaggaggaatggggagttactgttt
i cerAty1.NW_012002535v1          C 0 M 2300
s chlSab2.chr17_KE148042v1_random    85961 134 -    117593 aaagca-gaacattaaaa-acatatttgaacactcatgttcatagcagcataattcccaatagccaaattcata-gagacagaaagtagaa-c--tggtttcaggggccagggggaaggaggaatggggagttactgttt
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             34920 136 -    735854 aaagca-gaacattaaaa-agatatttgaacactcatgtttatagcagcataattcccgatagccatattcata-gagacagaaagtagaa-cagtggtttcaggggccagggggaaggaggaatggggagttactgttt
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17465252 130 -  18854210 aaaccagaaacaaaaagataaatatatgattccacttatatgaggcaccaaga------atggtcaagttcata-gagacagaaagtagaa-cggagtcaccagggaccagggagc--taggaatggggaggtgctgttt
i otoGar3.GL873550                T 41625 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             77375 1239 -   1829203 I
e macNem1.NW_012012100v1            129098 2260 +   1495729 I
e macFas5.chr4                    29946187 2280 - 170955103 I

a score=1895713.000000
s hg38.chr6_GL000254v2_alt         1317943 754 +   4827813 agtaggcacagagtttcaggatgcacaaaaatgtgaatgtacttaatgccactgaactgtacacttttaaatggtgaaaatagtgaacttta---tatatatattttacgacaattaaacaaCAAAAAAGAAATTGTCACAGTGTACCAAACAATAATTTAGAATTAGAAAGAGGCTGGGGTCCTGTTCAGAGAGAAAAAAACCAAGGC--------------------CTGAGGAAGGGCCTTCAGAGAGGAGTGGTGCTGAAGGCGGAGCAGTCACACTCCAAAAGAGGGTTCAGGTTAGAAAACCCTCACAGGAGGAAGGTGGTGCTGGGAGAAGGCCCAGAGGAGGGGATGACCACAGCCCACTATGTGGT-AAGTGAACATTTTGGATATTAAGTCAAGGAACTGACAGCCCACCGGGGTCAAGGAACTGAAAGAG---GATGAGGGTCAAGGAGCCGTTGGACT-AGAGCCTGTGTTGGGTCTGGGTGGGGGTGAGGAGATGGGCAGGGCAAGGACTAAAGGGTGGCATGAGAAGGAAGGGGGG-TGACCCTGAGAGAACTTGGGGTAAAGTGAGAACAG--GAAGGGAGGGGTTGTCTGGGGGAG----GGTGGGGTTTGGGGAAGGTGAGAACTTGCTGAGGG-CCCAAGGCAGCTGGTCAAGAGGTGGGAACAGCACAAGGTCCCA-----AGGCAGAGAGGGGCAGAGGGACCAGGGAGGGATGGTCCAGCACCTGAGGGCT----------------------------GCAGGGTGGGGTCCTCAA-GAGGGTGAGGCTGAGGATGAAGGAG
s panTro5.chr6                    30188813 772 + 175400573 agtaggcacagagtttcaggatgcacaaaaatgtgaatgtacttaatgccactgaactgtacacttttaaatggtgaaaatagtgaacttta---tatgtatattttatgacaattaaacaaCAAAAAAGAAATTGTCACAGTGTACCAAACAATAATACAGAATTAGAAAGAGGCTGGGGTCCTGATCAGAGAGAAAAAAACCAAAGCAG--AGGTGAGATTCAC-GCCTGAGGAAGGGCCTTCAGAGAGGAGTGGTGCTGGAGGCGGAGCAGTCACACTCCAAAAGAGGGTTCAGGTTAGAAAACCCTCACAGGAGGAAGGTGGTGCTGAGAGAAGGCCCAGAGGAGGGGATGACCACAGCCCACTATGTGGT-AAGTGAAGATTTTGGATATGAAGTCTAGGAACTGACAGCCCACCAGGGTCAAGGAACCAAAAGAG---GATGAGGGTCAAGGAGCCATTGGACT-AGAGCCTGTGTTGGGTCTGGGTGGGAGTGAGGAGATGGGCAGGGCAAGGACTAAAGGGTGGCATGAGAAGGAAGGGGGGGTGACCCTGGGAGAACTTGGGGTAAAGTGAGAACAG--GAAGGGAGGGGTTGTCTGGGGGAG----GGTGGGGTTTGGGGAAGGTGAGAACTTGGTGAGGG-CCCAAGGCAGCTGGTCAAGAGGTGGGAACAGCACAAAGTCCCA-----AGGCAGAGAGGGGCAGAGGGACCAGGGAGGGATGGTCCAGCACCTGAGGGTT----------------------------TCAGGGTGGGGTCCTCAA-GAGGGTGAGGCTGAGGATGAAGGAG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30418638 762 + 173848474 agtaggcacagagtttcaggatgcacaaaaatgtgaatgtacttaatgccactgaactgtacacttttaaatggtgaaaatagtgaacttta---tatgtatatttcatgacaattaaacaaCAAAAAAGAAATTGTCACAGTGTACCAAACAATAATATAGAATTAGAAAGAGGCTGGGGTCCTGTTCAGAGAGAAAAAAACCAAGAG----AGGTGAGC--------CTGAGGAAGGGCCTTCAGAGAGGAGTGGTGCTGAAGGCGGAGCAGTCACACTCCAAAAGAGGGTTCAGGTTAGAAAACCCTCACAGGAGGAAGGTGGTGCTGGGAGGAGGCCCAGAGGAGGGGATGACCACAGCCCACTATGTGGT-AAGTGAAGATTTTGGATATGAAGTCTAGGAACTGACAGCCCACCGGGGTCAAGGAACCGAAAGAG---GATGAGGGTCAAGGAGCCATTGGACT-AGAGCCTGTGTTGGGTCTGGGTGGGGGTGAGGAGATGGGCAGGGCAAGGACTAAAGGGTGGCATGAGAAGGAAGGGGG--TGACCCTGGGAGAACTTGGGGTAAAGTGAGAACAG--GAAGGGAGGGGTTGTCTGGGGGAG----GGTGGGGTTTGGGGAAGGTGAGAACTTGGTGAGGG-CCCAAGGCAGCTGGTCAAGAGGTGGGAACAGCACAAGGTCCCA-----AGGCAGAGAGGGGCAGAGGGACCAGGGAGGGATGGTCCAGCACCTGAGGGCT----------------------------GCAGGGTAGGGTCCTCAAGGAGGGTGAGGCTGAGGATGAAGGAG
i panPan2.chr6                    C 0 M 441
s gorGor5.CYUI01015528v1             73591 753 +   2037526 agtaggcacagagtttcaggatgcacaaaaatgtgaatgtacttaatgccactgaactgtacacttttaaatggtgaaaatagtgaacttta---tatatatattttacgacaattaaacaaCAAAAAAGAAATTGTCACAGCGTACCAAACAATAATATAGAATTAGAAAGAGGCTGGGGTCCTGGTCAGAGAGAAAAAAACCAAGGC--------------------CTGAGGAAGGGCCTTCAGTGAGGAGTGGTGCTGAAGGCGGAGCAGTCACACTCCAAAAGAGGGTTCAGGTTAGAAAACCCTCACAGGAGGAAGGTGGTGCTGGGAGAAGG-CCAGAGGAGGGGATGACCACAGCCCACTATGTGGT-AAGTGAAGATTTTGGATATGAAGTCTAGGAACTGACAGCCCACCGGGGTCAAGGAACCGAAAGAG---GATGAGGGTCAAGGAGCCGTTGGACT-AGAGCCTGTGTTGGGTCTGGGTGGGGGTGAGGAGATGGGCAGGGCAAGGACTAAAGGGTGGCATGAGAAGGAAGGGGGGGTGACCCTGGGAGAACTTGGGGTAGAGTGAGAACAG--GAAGGGAGGGGTTGTCT-GGGGAG----GGTGGGGTTTGGGGAAGGTGAGAACTTGCTGAGGG-CCCAAGGCAGCTGGTCAAGAGGTGGGAACAGCACAAGGTCCCA-----AGGCAGAGAGGGGCAGAGGGACCAGGGAGGGATGGTCCAGCACCTGAGGGTT----------------------------TCAGGGTGGGGTCCTCAA-GAGGGTGAGGCTGAGGATGAAGGAG
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74764499 800 + 122973662 aatgggcacagagtttcaggacacaaaaatatgagaaggtacttaatgccactgaactgtacacttttaaatggtgaaaatagtgaacttta---tatgtacattttaccacaattaaacaaCAAAAAAGAAATTGTCACAGTGTACCAAACAATAAGATAGAATTAGAAAGAGGCTGGGGTCCTGGTCAGAGAAAAAAAAACCAAAGCAG--AGGCGAGATTCAC-GCCTGAGGAAGGGCCTTCAGAGAGGAGTGGTGCTGGAGGGGGAGCAGTCACACTCCAAAAGAGGGTTCAGGTTAGAAAACCCTCACAGGAGGAAGGTAGTGCTGGGAGAAGTCCTAGCGGAGGGGACGACCACAGCCCACTATGTGGT-AAGTGAAGATTTTGGATATGAAGTCTAGGAACTGACAGCCCACTGGGGTCAAGGAACCAAAAGAG---GATGAGGGTCAAGGAGCCGTTGGACT-ACAGCCTGTGTTGGGTCTGGGTGGGGGTGAGGAGATGGGCAGGGCAAGGACTAAAGGGTGCCATGAGCATGGAGTGGGGGTGACCCTGGGAGAACTTGGGGTAAAGTGAGAACAG--GAAGGGAGGGGTTCTTTGGGGGAG----GCTGGGGCTTGGGGAGGGTGAAAATTTGCTGAGGG-CCCCAGGTAGCTGGGCAAGAGGTGGAAACAGCACAAGGTCCCA-----AGGCGGAGAGGGGCAGAGGGACAAGGGAGGGATGGTCCAGCACCTGAGGGCTCTCCTTGGCCTCCTCCCTATACCCCATACCAGGGTGGGGTCCTCAA-GAGGGTGAGGCTGAGGATAAAGGAG
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30578289 762 + 172585720 aatgggcgcagagtttcaggatgcacaaaaatgagaatgtacttaatgccactgaactgtccacttttaaatggtgaaaatagtgaagttta---tatgtatattttgccacaattaaacaaCAAAATA-AAATTGTCACAGTGTACCAAACAATAATATAGAATTAGAAAGTGGTTGGGGTCCTGGTCAGAGAGAAAAAAACTAAGGCAG--AGGTGAGATTCAC-GCCTGAGGAAGGGCCTTCAGAGGGGAGTGGTGCTGGAAGGGGAGCAGTCACACTCCAAAAGAGGGTTCAGGTTACAAAACCCTCACTGGAGGAAGGTGGTGCTGGGAGAAGGCCCAGAGGAGGA---GACCACAGCCCACTATGTGGT-AAGTGAAGATTTTGGAT---AAGTCTAGGAACTGAGAGCCCACTGGGGTCAAGGAACCAAAAGAG---GATGAAGGTCAAGGAGCCCTTGGACC-AGAGCCTGTGTTGGGTCTGGGTGGGGGTGAGGAGATGGGCAGGGCAAAGACTAAAGGATGGCATGAGCATGGAGTGGGGGTGACCCTGGGAGAACTTGGAGTAAAGTGAGAACAG--GAAGGGAGGAGGTCTGTGGGGGAG----GGTGGGGTTTGGGGAAGGTGAGAACTTGCTGAGGG-CCCAAGGCAGCTGGGCAAGAGGTGGGAGCAACACAAGGTCCCA-----AGGCGGAGAGGGGCAGAGGGACCAGGGAGCGATGGTCCGGCACCTGTGTGCT----------------------------GCAGGGTGGGGTCCTCAA-GAGGGTGAGGCTGAGGATGGAG---
i rheMac8.chr4                    C 0 C 0
s chlSab2.chr17_KE148042v1_random    86095 748 -    117593 aatgggcacagaatttcacgatgcacaaaaatgagaatgtacttaatgccactgaactgtccacttttaaatggtgaaaatagtgaagttta---tatgtatattttaccacaattGGACAACAAAATA-AAATTGTCACAGTGTACCAAACAATAATATAGAATTAGAAAGTGGTTGGGGTCCTGGTCAGAGAGAAAAAAACCAAGGCAG--AGGTGAGATTGAT-GCCTGAGGAAGGGCCCTCAGAGGGGAGTGGTGCTGGAAGGGGAGCAGTCACACTCCAAAAGAGGGTTCAGGTTACAAAACCCTCACTGGAGGAAGGTGGTGCTGGGAGAAGGCCCAGAGGAGGAGATGACCACAGCCCACGGTGTGGT-AAGTGAAAATTTTGGAT---AAGTCTAGGAACTGAGAGCCCACTGGGGTCAAGGAA--------------------TCAAGGAGCCCTTGGACC-AGAGCCTGTGTTGGGTCTGGATGGGGGTGAGGAGATGGGCAGGGCAAAGACTAAAGGATGGCATGAGCACGGAGTGGGGGTGACCCTGGAAGAACTTGGGGTAAAGTGAGAACAG--GAAGGGAGGGGTTTTGTGGGGGAG----GGTGGGGTTTGGGGAAGGTGAGAACTTGCTGAGGG-CCCAAGGCAGCTGGGCAAGAGGTGGGAGCAGCACAAGGTCCCA-----AGGTGGAAAGGGGCAGAGGGACCAGGGAGGGATGGTCCAGCACCTGTGTGCT----------------------------GCAGGGTGGGGTCCTCAA-GAGGGTGAGGCTGAGGATGGAG---
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             35056 728 -    735854 aatgggcacagagtttcaggatgcacaaaaataacagtgtacttaatgccactgaacagtccacttttaaatggtgaaaatagtgaagttta---tatgtatattttaccacaattaaacaaCAAAATG-AAATTGTCACAGTGTACCAAACAATAATATAGAATTAGAAAGAGGTTGGGGTACTGGTCGAAGAGAAAAAAACCAAGGCAG--AGGTGAGATTCAC-GCCTGAGGAAGGGCCTTCAGAGGGGAGTGGTGCTGGAAGGGGAGCAGTCACACTCCAAAAGAAGGTTCAGGTTACGAAACCCTCACTGGAGGAAGGTGGTGCTGGTG------------------------------------GTGGT-AAGTGAAGATTTTGGAT---AAGTCTAGGAACTGAGAGCCCACTGGGGTCAAGGAACCAAAAGAG---GATGAAGGTCAAGGAGCCCTTGGACC-AGAGCCTGTGTTGGGTCTGGGTGGGGGTGAGGAGATGGGCAGGGCAAAGACTAAAGGATGGCATGAGCATGGAGTGGGGGTGACCCTGGGAGAACTTGGGGTAAAGTAAGAACAG--GAAGGGAGGGGTTCTGT-GGGGAG----GGTGGGGTTTGGGGAAGGTGAGAACTTGCTGAGGG-CCCAAGGCAGCTCGGCAAGAGGTGGGAGCAGCACAATGTCCCA-----AGACGGAGAGGGGCAGAGGGACCAGGGAGCGATGGTCCAGCACCTGTATGCT----------------------------GAGGGGTGGGGTCCTCAA-GAGGGTGAGGCTGAGGATGGAG---
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17465382 760 -  18854210 -aagggtacagaggttcagattgtacaaaaacatgaatgcaattagtgccacagaactgtacatggaaaaat-attaaaacagtaaaatgtatgttatgtgtattttaccacaattaaacaaCAAACAAGGAACCATCATGGTGTACCCCAGAATAATACAGAATTAGAAGGG----AGGGTGCTTGTGAAAGGAGGGAAAACCAAAGCAGCCAGGCCAGAGCCACAGCCTGAGGAAGGGTCTGCAGAGAGGAGCAGAGCTGGA-GAGGAACAGTCTCTCCCCAAAAGAGGGTCAGGGTTAGGAAACCACC-CAGGAGAAAGGCAGTGCTGGGACAAGGTCCACAGGACAGGGATACCACAGCCGACAACAAGGCAAAACTAAGATTTTGGAGACATGCTATAGG----------------GAGTCAAAGAACCAAAAGGGAATGATGAGGGTCAAGGAGCAGGTGGACCAAGAGCCCATTTGGAGTCTGG-TGGGGAAGTGGAGATGGTCAGGGCAAGGATT--GGGGTGGGGTAAGCATGGGGCAAGGGCAA-CTTAGGAGAACTT-AAGTCAGGAGAGGACAGGAGAAAAGAGGGGGTCTCTGGGTGAGAGAAGGCAGAGGCTGTGAATGGTGAGAAATTGGTGAGGGCCCCCAGCCAGCTGGGCAAGGGGTGGGAGCAGGATGAGGTCCCCCCTCTGGGTGGAAAGGCCCAGAGGAACCAGAGAGAGC--GCGCAGCTGCTATGGGCT----------------------------GGAGAGCAGG--CCCGGG-AAGGGTAAAGCTCAGAATGAAGA--
i otoGar3.GL873550                C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             77375 1239 -   1829203 I
e cerAty1.NW_012002535v1            236646 2300 -    863181 M
e macNem1.NW_012012100v1            129098 2260 +   1495729 I
e macFas5.chr4                    29946187 2280 - 170955103 I

a score=700300.000000
s hg38.chr6_GL000254v2_alt         1318697 349 +   4827813 TGGGGAACGGGTCACC-TGACTCAGGGCCCAGAGCAGGCATCTGCACTGGAGGGGAGGGGGCATCTGCGTTGCCCTGCGCCCTGCCTAAGGCCCAACTTTCATTAGCACCATG---CCCCTTAAGTGGCCTGGAGGGGAGTGGGATGGAGGGAAGACTCCCCCGACAAAAGGCAGCACCAGAAAGTTAGGGTCAGGGACAGCTGGGAATGGGGAGGCATAGGGGCAGCACTGGGTGAAGGCTGCTGGTAGGAAAGGCCCATAAGGGAGGCA-GGAGGGACCTGCGGTGGTGGGAGCAGGGGATGAGGGCAGAGGACACCCTACAAATGGATCAGAGAACTGCAGATAGAAAGGG
s panTro5.chr6                    30189585 352 + 175400573 TGAGGAACGGGTCACC-TGAGGCAGGGCCCAGAGCAGGCATCTGCACTGGAGGGGAGGGAGCATCTGCGTTGCCCTGCACCCTGCCTAAGGCCCAACTTTCATTAGCACCAGGGCTCCCTTTAAGTGGCCTGGAGGGGAGTGGGATGGAGGGAAGACTCCCCCAACAAAAGGCAGCACCAGAAAGTTAGGGTCAGGGACAGCTGGGAATGGAGAGGCATAGGGGCAGCACTGGGTGAAGGCTGCTTGTAGGAAAGGCCCATAAGGGAGGCA-GGAGGGACCTGCGGTGGTGGGAGCAGGGGATGAGGGCAGAGGACACCCTACAAATGGATCAGAGAACTGCAGATAGAAAGGG
i panTro5.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             74344 353 +   2037526 TGGGGAACGGGTCACC-TGAGGCAGGGCCCAGAGCAGGCATCTGCACTGGAGGGGAGGGAGCATCTGCGTTGCCCTGCGCCCTGCCTAAGGCCCAACTTTCATTAGCACCAGGGCTCCCCTTAAGTGGCCTGGAGGGGAGTGGGATGGAGGGAAGACTCCCCCGACAAAAGGCAGCACCAGAAAGTTAGGGTCAGGGACAGCTGGGAATGGAGAGGCATAGGGGCAGCACTGGGTGAAGGCTGCTTGTAGGAAAGGCCCATAAGGGAGGCAGGGAGGGACCTGCGGTGGTGGGAGCAGGGGATGAGGGCAGAGGACACCCTACAAATGGATCAGAGAACTGCAGATAGAAAGGG
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74765299 353 + 122973662 TGGGGAAGGGGCTGCCATGAGGCAGGGCCCAGAGCAGGCACTTGCACTGGAGGGGAGGGTGCATCTGTGCTGCTCTGCGCCCTGCCTAAGGCCCAACTTTCATTAGCACCAGGGCGCCCCTTAAGTGGCCTGGAGGGGAGTGGGATGGAGGGAAGACTCCCCGGACAAAAGGCAGCACCAGAGAGTTAGGGTCAGGGACAGTTGGGAATGGGGAGGCATAGGGGCAGCACTGGGTGAAGGCTGCTTGTAGGAAAGGCCCATAAGGGAGGCA-GGAGGGACCTGCGGTGGTGGGAGCAGGGGATGAGGGCAGAGGACACCCTACAAATGGATCAGAGAACTGCAGACAAAAAGGG
i nomLeu3.chr1a                   C 0 C 0
s rheMac8.chr4                    30579051 351 + 172585720 TGGGGAAGGGGCCACCGTGAGGCAGGGCCCAGAGCAGGCACTTGCACTGGAGGGGAGGAAGCATCTGTGCTGCCCTGTGCCCTGCCTAAGGCCCAACTTTCATTAGCACCAGGGCTCCCCTCAAGTGGCCTGGAGGGAAGTCGGATGGAGGGAAGAC-CACGGGGCAAAAGGCAGCACCAGAAAGTTAGGGTCAGGGACAGTTGGGAAGGGGGAGGCATAGGGGCAGCACTGGGTGAAGGCTGCTTGTAGGAATGGCCCATAAGGAAGGCA-AGAGGGACCTGCGGTGGCAGG-GCAGGGAATGAGGGCAGAGGATATCCTACAAATAGATCAGAGAACTGCAGACAGAAAGGG
i rheMac8.chr4                    C 0 C 0
s chlSab2.chr17_KE148042v1_random    86843 351 -    117593 TGGGGAAGGGGCCACCGTGAGGCAGGGCCCAGAGCAGGCACCTGCACTGGAGGGGAGGAAGGATCTGTGCTGCCCTGTGCCCTGCCTAAGGCCCAACTTTCATTAGCACCAGGGCTCCCCTCAAGTGGCCTGGAGGGAAGTGGGATGGAGAGAAGAC-CATGGGACAAAAGGCAGCACCAGAAAGTTAGGGTCAGGGACAGTTGGGAAGGAGGAGGCATAGGGGCAGTACTGGGTGAAGGCTGCTTGTAGGAATGGCCCATAAGGGAGGCA-AGAGGGGCTGTCGGTGGCAGG-GCAGGGAATGAGGGCAGAGGATATCCTACAAATAAATCAGAGAACTGCAGACAGACAGGG
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             35784 350 -    735854 TGGGGAAGGGGCCACCCTGAGGCAGGGCCCAGAGCAGGCACCTGCACTGGAGGGGAGGAAGCATCTGTGCTGCCCTGTGCCCTGCCTAAGGCCCAACTTTCATTAGCACCAGGGCTCCCCTCAAGTGGCCTGGAGGGAAGTGGGATGGAGGGAAGAC-CACGGGACAAAAGGCAGCACCAGAAAGTTAGGGTCAGGGACAGTTGGGAAGGGGGAGGCATA-GGGCAGCACTGGGTGAAGGCTGCTTGTAGGAATGGCCCATAAGCGAGGCA-AGAGGGACCTGCCGTGGCAGG-GCAGGGAATGAAAGCAAAGGATATCCTACAAATAGATCAGAGAACTGCAGACAGAAAGGG
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17466142 339 -  18854210 --TGACAGGGGCCACAGCAAGGCAGGGCACA-AGCAAGCAGCTGTACTG--GGGAAAGGGGGAT-TACACTGTCTTGATCCCC-TTTAAGGCCTAAGTGTCATTCTCATCAGAGATTCCCTTGGGACAGCTGGAGGGGAGTAGAATGGAGGGAAGAC-CCCTGAACTAAAGGCACCACCAGAAAGTCAGGGTCAAGG--CATTGGAA--GGGGTGGCATACCAGCAGCACTGGGTGAAGGCTCCTTGCAGGAAGGGCTCATAGGGAAGG-A-GAAAGGCCTTGCAATAGTGCA-GGAGGGGGCGACCTCAGAGGGCTCCCTAGAAATGGATTGGAGAACTGTGGCCAGGAAGGG
i otoGar3.GL873550                C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             77375 1239 -   1829203 I
e cerAty1.NW_012002535v1            236646 2300 -    863181 M
e macNem1.NW_012012100v1            129098 2260 +   1495729 I
e macFas5.chr4                    29946187 2280 - 170955103 I
e panPan2.chr6                    30419400 441 + 173848474 M

a score=231663.000000
s hg38.chr6_GL000254v2_alt         1319046 100 +   4827813 GTAGCAGGGA-GCAGGGAGGGCAACAGGACCCAGGGGGCCATGAGAAAGGAAGCTGAGGAAGTAGGAGGGAAACTGG-TGTCCTTAGATCATTGGAGTCCAC
s panTro5.chr6                    30189937 100 + 175400573 GTAGCAGGGA-GCAGGGAGGGCAACAGGACCCAGGGGGCCATGAGAAAGGAAGCTGAGGAAGTAGGAGGGAACTTGG-TGTCCTTAGATCATTGGAGTCCAC
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30419844 100 + 173848474 GTagcaggga-gcagggagggcaacaggacccagggggccgtgagaaaggaAGCTGAGGAAGTAGGAGGGAAACTGG-TGTCCTTAGATCATTGGAGTCCAC
i panPan2.chr6                    M 441 C 0
s gorGor5.CYUI01015528v1             74697 101 +   2037526 GTACCAGGGA-GTAGGGAGGGCAACAGGACCCAGGGGGCCATGAGAAAGGAAGCTGAGGAAGTAGGAGGGAACTTGGTTGTCCTTAGATCATTGGAGTCCAC
i gorGor5.CYUI01015528v1          C 0 C 0
s nomLeu3.chr1a                   74765652  99 + 122973662 GTAGCAAGGA-GAAGGGAGGGCAACAGGACCCAGGGGCCCCTGAGATGGGCAG-GGAGGAGGTGAGAGGGAACCTGG-TGTCCTTAGATCATTGGAGTCCAC
i nomLeu3.chr1a                   C 0 M 548
s rheMac8.chr4                    30579402 100 + 172585720 GTAGCAGGAA-GCAGGGAGGACAACAGGACCCAGGGGGCCCTGAGATGGGACAGGGAGGAGGTTGGAGAGAACCTGG-TGTCCTTAGATCATTGGAGTCCAC
i rheMac8.chr4                    C 0 C 0
s chlSab2.chr17_KE148042v1_random    87194 100 -    117593 GTAGCAGGAA-GCAGGGAGGACAACAGGACCCAGGGGGCCCTGAGATGGGACGGGGAGGAGGTTGGAGGGAACCTGG-TGTCCTTAGATCATTGGAGTCCAC
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             36134 100 -    735854 GCAGCAGGAA-GCAGGGAGGACAACAGGACCCAGGGGGCCCTGAGATGGGACAGGGAGGAGGTTGGAGGGAACCTGG-TGTCCTTAGATCATTGGAGTCCAC
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17466481  95 -  18854210 AGAGCAGGGAGGCAGGGAACTGTATGAGAGAAAGGAAAGGGTGAGGCAGACAGGGGAGGAGGTGGGAGA------TG-TGTGTTTAGATCAGTAGGGTTAAT
i otoGar3.GL873550                C 0 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             77375 1239 -   1829203 I
e cerAty1.NW_012002535v1            236646 2300 -    863181 M
e macNem1.NW_012012100v1            129098 2260 +   1495729 I
e macFas5.chr4                    29946187 2280 - 170955103 I

a score=1037624.000000
s hg38.chr6_GL000254v2_alt         1319146 528 +   4827813 ---AGTAGCTGGGAGGGTTGACAGAGAGGAAAG-AACCCTGGGAACGGGAGGCGAAGGGATAAT-GAGCTGGGGATGGGAGCAGTCGCAGGAAGAATCCTCTGCCTGGAGCCGGCAGACTCCAACCCCTCAGCTTGAGAGTCAGGAGCC-CCATAGTCCCCACAGCAATAG---GAAGCACCAGCTCCTGGTCCCGAAAAAAGGAAGGCCCCAACTCCAGGGACTGCGGCCCGCCCTGGAGCTGAGAACACGCGGACTCCAGGGAGAGGACAGGGCTTCAG-GGACCCG-----AGAGCCGCTCTGAGCACCGGGGGATGTGGCTGCCTCAGCGGCAGAGCTGGAAGGGCCCTCGAATGCCATTCACAGGAACAG------------CCCAGGAACCCAGGGACTTCAGAAGGGCTGGTTTGTCCgaaaagtgagaga-aggcggaggag--aggtg-----aggagagcaagtgcaagaagagaccagaaAG-----TGCAGGGGGCG-----GGTG------------------------------------------ATGCGCGATCCCGAGGAGGACTGAAAAGA-GACTGAAAAGCA--GGGCTGAGGAGTGG
s panTro5.chr6                    30190037 531 + 175400573 ---AGTAGCTGGGAGGGTTGACAGAGAGGAAAG-AACCCTGGGAACGGGAGGCGAAGGGAGAAT-GAGCTGGGGATGGGAGCAGTCGCAGGAAGAATCCTCTGCCTGGAGCCGGCAGACTCCAACCCCCCAGCTTGAGAGTCAGGAGCC-CCATAGTCCCCACAGCAATAA---GAAGCACCAGCTCCTGGTCCCGAAAAAAGGAGGACCCCAACTCCAGGGACTGCGGCCCGCCCTGGAGCTGAGAACACGCGGACTCCAGGGAGAGGACAGGGCTTCAG-GGACCCG-----AGAGCCGCTCTGAGCATCGGGGGATGTGGCTGCCTCAGCGGCAGAGCTGGAAGGGCCCTCGAATGCCATTCACAGGAACAG------------CCCAGGAACCCAGGGACTTCAGAAGGGCTGGTTTGTCCGAAAAGTgagagg-aggcggaggag--aggtg-----aggagagCAAGTGCAAGAAGAGACCAGAAAG-----TGCAGTGGGGG--TGCGGTG------------------------------------------ATGCGCGATCCCGAGGAGGACTGAAAAGA-GACTGAAAAGCA--GGGCTGAGGAGTGG
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30419944 527 + 173848474 ---AGTAGCTGGGAGGATTGACAGAGAGGAAAG-AACCCTGGGAACGGGAGGCGAAGGGAGAAT-GAGCTGGGGATGGGAGCAGTCGCAGGAAGAATCCTCTGCCTGGAGCCGGCAGACTCCAACCCCTCAGCTTGAGAGTCAGGAGCC-CCATAGTCCCCACAGCAATAG---GAAGCACCAGCTCCTGGTCCCGAAAAAAGGAGGGCCCCAACTCCAGGGACTGCGGCCCGCCCTGGAGCTGAGAACACGCGGACTCCAGGGAGAGGACAGGGCTTCAG-GGACCCG-----AGAGCCGCTCTGAGCACCGGGGGATGTGACTGCCTCAGCGGCAGAGCTGGAAGGGCCCTCGAATGCCATTCACAGGAACAG------------CCCAGGAACCCAGGGACTTCAGAAGGGCTGGTTTGTCCGAAAAGTgagggg-aggcggaggag--aggtg-----aggagagCAAGTGCAAGAAGAGACCAGAAAG-----TGCAG-GGGCG-----GGTG------------------------------------------ATGCGCGATCCCGAGGAGGACTGAAAAGA-GACTGAAAAGCA--GGGCTGAGGAGTGG
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             74798 530 +   2037526 ---AGTAGCTGGGAGGGTTGACAGAGAGGAAAG-AACCCTGGGAACGGGAGGCGAAGGGAGAAT-GAGCTGGGGATGGGAGCAGTCGCAGGAAGAATCCTCTGCCTGGAGCCGGCAGACTCCAACCCCTCAGCTTGAGAGTCAGGAGCC-CCATAGTCCCCACAGCAATAA---GAAGCACCAGCTCCTGGTCCCGAAAAAAGGAGGGCCCCAACTCCAGGGACTGCGGCCCGCCCTGGAGCTGAGAACACGCGGACTCCAGGGAGAGGACAGGGCTTCAG-GGACCCG-----AGAGCCGCTCTGAGCACC-GGGGATGTGGCTGCCTCAGCGGCAGAGCTGGAAGGGCCCTCGAATGCCATTCACAGGAACAG-------------CCAGGAACCCAGGGACTTCAGAAGGGCTTGTTTGTCCGAAAAGTgagagg-aggcggaggag--aggtg-----aggagagCAAGTGCAAGAAGAGACTAGAAAG-----TGCGGGGGGGGGGGGGGGTG------------------------------------------ATGC-CGATCCCGAGGAGGACTGAAAAGA-GACTGAAAATCA--GGGCTGAGGAGTGG
i gorGor5.CYUI01015528v1          C 0 C 0
s rheMac8.chr4                    30579502 532 + 172585720 ---AGCAGCCGGGAGGGTTGCCAGAGAGGAAAG-AACCCTGGGAAGGGCCGGCCAGGGGAGAAT-GAGCTGGGGATGGGAGAAGTCGCATGAAGAATCCTCTGCCCGGAGCCTGCAGACTCCAACCCCTCAGCTGGAGAGTCAGGAGCC-CCACAGTCCCCACAGCAATAG---GAAGCACCAGCTCCTGGTCCCG-AAAAAGGAGGGCCCCAGCTCCAGGAACTGCGGCCTGCCAGGGAGCTGAGAACACGCGCACTCTAGGGAAAGGACAGGGCTCCAG-GGACCCTGAAGCGAAGTCGCTCCGAGCACCGGGAAATGTGGCTGCCTCAGCGGCAGAGCTGGAAGGGCCCTCGAATGCCATTCACAGGAACAG------------CCCGGGGACCCAGGGACGTCAGAAGGGCTGGTTTGTCCGAAAAGTGAGAGG-AGGAGGAAGAG--AGGTG-----AGGAGACCAAATGCAAGAAGAGACCAGAAAG-----TGCAGAGGGCG-----GGTG------------------------------------------ATGCGCGACCCCGAGGAGGACCGAAAAGA-GAGGAGAAAGCA--GGGCTGAGGAGTGG
i rheMac8.chr4                    C 0 C 0
s chlSab2.chr17_KE148042v1_random    87294 528 -    117593 ---AGCAGCGGAGAGGGTTGCCAGAGAGGAAAG-AACCCTGGGAAGGGCCGGCCAGGGGAGAAT-GAGCTGGGGATGGGAGAAGTCGCATGAAGAATCCTCTGCCCGGAGCCTGCAGACTCCAACCCCTCAGCTTGAGAGTCAGGAGCC-CCACAGTCCCCACAGCAACAG---GAAGCACCAGCTCCTGGTCCCGAAAAAAGGAGGGCCCCAACTCCGGGGACTGCGTCCCGCCTGGGAGCTGAGAACACGCGGATTCTAGGGAAAGGACAGGGCTTCAG-GGACCCG-----AAAGTCGCTCCGAGCACCGGGAAATGTGGCTGCCTCTGCGGCAGAGGTGCAAGGGCCCTCGAATGCCATTCACAGGAACAG------------CCCGGGGACCCAGGGACATCAGAAGGGCCGGTTTGTCCGAAAAGTGAGAGG-AGGCAGAAGAG--AGGTG-----AGAAGACCAAACGCAAGAAGAGACCAGAAAG-----TGCAGGGGGCG-----GGTG------------------------------------------ATGCGCGATCCCGAGGAGGACTGAAAAGA-GACGAGAAAGCA--GGGCTGAGGAGTGG
i chlSab2.chr17_KE148042v1_random C 0 C 0
s manLeu1.NW_012107142v1             36234 527 -    735854 ---AGCAGCGGGGAGGGCTGCCAGAGAGGAAAG-AACCCTGGGAAGGGCCGGCCAGGGGAGAAT-GAGCTGGGGATGGGAGAAGTCGCATGAAGAATCCTCTGCCCGGAGCCTGCAGACTCCAACCCCTCAGCTTGAGAGTCAGGAGCC-CCACAGTCCCCACAGCAACAG---GAAGCACCAGCTCCTGGTCCCGAAAAAAGGAGGGCTCCAACTCCAGGGACTTCGGCCCGCCTGGGAGCTGAGAACACGCGGACTCTAGGGAAAGGACAGGGCTTCAG-GGACCCG-----AAAGTCGCTCCGAGCACCGGGAAATGTGGCTGCCTCAGCGGCAGAGCTGGAAGGGCCCTCGAATGCCATTCACAGGAACAG------------CCCGGGGACCCAGGGACGTCAGAAGGGCT-GTTTGTCCGAAAAGTGAGAGG-AGGCGGAAGAG--AGGTG-----AGGAGACCAAATGCAAGAAGAGACCATTAAG-----TGCAGGGGGCG-----GGTG------------------------------------------ATGCGCGACCCCGAGGAGGACCGAAAAGA-GATGAGAAAGCA--GGGCTGAGGAGTGG
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17466576 580 -  18854210 AGTGGGGGGTGGGGAGGGTACAAGGGAGGAGAGAAACCCAAGGAGTGGGCAGT--AGGGAGAGTGGGGGTGGGACTGAGAGGAGTCACAGGAATAATCCCTGACCT-----CAGAAG-------------AACCTGAAGGTCAGGAGCAGCCACAGTCCCCACAGCAGCAGTACAAAGTGCCAGCTCGTGGTCCTAAGAAAGAAAGGCTCCTAACTCCAGGTACTGGGGCCC----CAGAGCTGAGAATATGCTGACTCCGCGGAAAAGACAGGGCTTTGGAGGACCTG-----AGAGCTGTCCCCCTACCTGAGGAAAGCGGTTACCAGAGCAGCAGAAATGGAAGGGCCCCCGAAGGCCATTCAAAGGAGCAATCCCAGAGGCAATCCGGGAACCCAGGAGCA--AGAAAGACCGGGATGTCTGAAAAGGAAGAGGAAGGCACCAGAGCCAGGTGCAACCAGAAGA--AAATGCAGCGGGGGGTGAGGGGGTTGGATGCAGGGGGTT-----GGTGAGGGGGATGAAAAGGAATGAAAGGGGGTTTGAGGGATTGGGAATGAACGATCCCGaagaggactgaaaagaggactgaaaaACAGGGGGTTGAGGTGGGG
i otoGar3.GL873550                C 0 I 41572
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             77375 1239 -   1829203 I
e cerAty1.NW_012002535v1            236646 2300 -    863181 M
e macNem1.NW_012012100v1            129098 2260 +   1495729 I
e macFas5.chr4                    29946187 2280 - 170955103 I
e nomLeu3.chr1a                   74765751 548 + 122973662 M

a score=194393.000000
s hg38.chr6_GL000254v2_alt         1319674 129 +   4827813 CGGCAACCGGCAGCGTCCAGCTCCCGCACCTCGCTGCACATCGCACCTGAGCCCCGCCGCGACCGCATCGCG-----CTCGCTGCGACCCATTCGGACCCCCCAGAAACGCCAAGCCGCTCCCGCTCTAGCCGA
s panTro5.chr6                    30190568 129 + 175400573 CGGCAACCGGCAGCGTCCAGCTCCCGCACCTCGCTGCACATCGCACCTGAGCCCCGCCGCGACCACATCGCG-----CTCGCTGCGACCCATTCGGACCCCCCAGAAACGCCAAGCCGCTCCCGCTCTAGCCGA
i panTro5.chr6                    C 0 C 0
s panPan2.chr6                    30420471 128 + 173848474 CGGCAACCGGCAGCGTCCAGCTCccgcacctcgctgcacatcgcacctga-ccccgccgcgaccgcatcgcG-----CTCCCTGCGACCCATTCGGACCCCCCAGAAACGCCAAGCCGCTCCCGCTCTAGCCGA
i panPan2.chr6                    C 0 C 0
s gorGor5.CYUI01015528v1             75328 127 +   2037526 CGGCAA-CGGCAGCGTCCAGCTCCCGCACCTCGCTGCACATCGCACCTGAGCCCCGCCGCGACCGCATCGCG-----CTCGCTGCGACCCATTCGGACCCCCCAGAAACG-CAAGCCGCTCCCGCTCTAGCCGA
i gorGor5.CYUI01015528v1          C 0 C 0
s rheMac8.chr4                    30580034 125 + 172585720 CCGCAACCAGTCGCGTTCAGTTCCGCCACC---CCCGACATCGCACCTGAGCCCCGACGCGACCACAGAGCG-----CTCGCAGCGACACATTCGGACACCCCAGAAACGCCACGTAGCTCCCGCTCC-GCCGA
i rheMac8.chr4                    C 0 C 0
s chlSab2.chr17_KE148042v1_random    87822 125 -    117593 CGGCAACCAGTCGGGTTCAGTTCTGCCACC---CCCGACATCGCACCTGAGTCCCGACGCGACCCCACAGCG-----CTCGCAGCGACACATTCGGACACCCCAGAAACGCCACGCCGCTCCCGCTCC-GCCGA
i chlSab2.chr17_KE148042v1_random C 0 n 0
s manLeu1.NW_012107142v1             36761 125 -    735854 CGGCAACCAGTCGCGTTCAGTTCCGCCACT---CCCGACATCGCACCTGAGCCCCGACGCGACCACAGAGCG-----CTCGCAGCGACACATTCGGACACCCCAGAAACGCCACGCCGCTCCCGCTCC-GCCGA
i manLeu1.NW_012107142v1          C 0 C 0
s otoGar3.GL873550                17508728 130 -  18854210 CGGAGCCGCGCCAACTCCAGCTCCTTCCCCT--ACCCGCTCCGCCACTTCGCTACACCCCTCCTGTGTAGCGCGATACTCGCCGCCACTCATCCAGAC-CCCTGGAAACACTCTCGGGCTCTGGCTCC-GCTGA
i otoGar3.GL873550                I 41572 C 0
e mm10.chr17                      58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1             16854 24969 -    383796 I
e cebCap1.NW_016107755v1            526502 23853 -   1771730 I
e colAng1.NW_012115577v1             77375 1239 -   1829203 I
e cerAty1.NW_012002535v1            236646 2300 -    863181 M
e macNem1.NW_012012100v1            129098 2260 +   1495729 I
e macFas5.chr4                    29946187 2280 - 170955103 I
e nomLeu3.chr1a                   74765751 548 + 122973662 M

a score=16821.000000
s hg38.chr6_GL000254v2_alt  1319803 4 +   4827813 gggc
s panTro5.chr6             30190697 4 + 175400573 gggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30420599 4 + 173848474 gggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      75455 4 +   2037526 gggc
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30580159 4 + 172585720 gggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29948467 4 - 170955103 gggc
i macFas5.chr4             I 2280 C 0
s macNem1.NW_012012100v1     131358 4 +   1495729 gggc
i macNem1.NW_012012100v1   I 2260 C 0
s chlSab2.chr17            29338854 4 -  71996105 gggc
i chlSab2.chr17            T 28304 C 0
s manLeu1.NW_012107142v1      36886 4 -    735854 gggc
i manLeu1.NW_012107142v1   C 0 C 0
s otoGar3.GL873550         17508858 4 -  18854210 GGAC
i otoGar3.GL873550         C 0 T 39188
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      16854 24969 -    383796 I
e cebCap1.NW_016107755v1     526502 23853 -   1771730 I
e colAng1.NW_012115577v1      77375 1239 -   1829203 I
e cerAty1.NW_012002535v1     236646 2300 -    863181 M
e nomLeu3.chr1a            74765751 548 + 122973662 M

a score=7802.000000
s hg38.chr6_GL000254v2_alt  1319807 3 +   4827813 tag
s panTro5.chr6             30190701 3 + 175400573 tag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30420603 3 + 173848474 tag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      75459 3 +   2037526 tag
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30580163 3 + 172585720 tgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29948471 3 - 170955103 tgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     131362 3 +   1495729 tgg
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29338858 3 -  71996105 tgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      36890 3 -    735854 tgg
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17508862 39188 -  18854210 T
e aotNan1.NW_018496904v1      16854 24969 -    383796 I
e cebCap1.NW_016107755v1     526502 23853 -   1771730 I
e colAng1.NW_012115577v1      77375 1239 -   1829203 I
e cerAty1.NW_012002535v1     236646 2300 -    863181 M
e nomLeu3.chr1a            74765751 548 + 122973662 M

a score=932945.000000
s hg38.chr6_GL000254v2_alt  1319810 260 +   4827813 aacaatcctgccacctcagcctcctgagtagttgggactacaagcgagtgccaccacgtccagctGTCATTTACCATCTGGTACCAACCCCCATTAGACAATGAACCATCCATGATCACTAACTGTGTCCCTTCCATCTTCGTCAGCTTTACGAGCATTTTTTTTC--CCAATGGAACTCCACCTATGATTACTAACCATTCCCCAGGACCCCTAGCCTACACTTTTCTGTAGATGAAAATGTCATACACCACAGAGTTTTA
s panTro5.chr6             30190704 262 + 175400573 aacaatcctgccacctcagcctcctgagtagttgggactacaagcgagtgccaccacgtccagctGTCATTTACCATCTGGTACCAACCCCCATTAGACAATGAACCATCCATGATCACGAACTGTGTCCCTTCCATCTTCGTCAGCTTTACGAGCATTTTTTTTTTTCCAATGGAACTCTACCTGTGATTACTAACCATTCCCCAGGACCACTAGCCTACACTTTTCTGTAGATGAAAATGTCATACACCACAGAGTTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30420606 261 + 173848474 aacaatcctgccacctcagcctcctgagtagttgggactacaagcgagtgccaccacgtccagctGTCATTTACCATCTGGTACCAACCCCCATTAGACAATGAACCATCCATGATCACGAACTGTGTCCCTTCCATCTTCGTCAGCTTTACGAGCATTTTTTTTT-CCCAATGGAACTCTACCTGTGATTACTAACCATTCCCCAGGACCACTAGCCTACACTTTTCTGTAGATGAAAATGTCATACACCACAGAGTTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      75462 256 +   2037526 agcaatcctgccacctcag-ctcctgagtagttgggactacaagcgagtgccaccacgtccagctGTCATTTACCATCTGGTACCAACCCCCATTAGACAATGAACCATCCATGATCACGAACTGTGTCCCTCCCATCTTCGTCAGCTTTACGAGCATTTTTTTTC----CATGGAACTCTACCTATGATTACTAACCATTCCCCAGGACC-CTAGCCTACACTTTTCTGTAGATGAAAATGTCATACACCACAGAGTTTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74766299 257 + 122973662 agcaatcctgccacctcagcctcctgagtagttgggactacacgtgagtgccaccacgcccagctGTCGTTTACCATCTGGTACCAAcccccattagacaatgaaccatccatgatcaggaactgtgtcgcttccatcttcgtCAGCTTTACGAACATTTTTTTTA-----AGGGAATCCTAACTATGATTACTAACCATTCCCCGAGACCCCTAGCCTACACTTTTCTGTAGGTGAAAATGTCATACATCACAGAGTTTTA
i nomLeu3.chr1a            M 548 C 0
s rheMac8.chr4             30580166 259 + 172585720 agcaatcctgccacatcagcctcctgagtagttgggactacaggcgagtgccaccacgcccaactGTCATTTACCATCTGGTACCAACCCCCATTAGACACTGAACCATCCATGATCAGGAGCTGTGTCCATTCCATCTTCGTCAGCCTTACGAACATTATTTTTT---AAGCGGAACTCTACCTATGATTACTAATCATTCCCCAAGACCTCTAGCCTGCACTTTTCTGTAGATGAAAATGTCATACATCACAGAGTTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29948474 258 - 170955103 agcaatcctgccacctcagccacctgagtagttgggactacaggcgagtgccaccatgcccagctatcatttaccatctggtgtcatcctccaatagacagtgaaccatctgtgatcaggaactgtgtccattccatcttcgtGAACCTTACAAACA-TATTTTTA---AAATGGAACTCTACCTATGATTACTAACCATTCTCCAAGACCCCTAGCCTACACTTTTCTGTAGATGAAAATGTCATACATCACAGAGTTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     131365 258 +   1495729 agcaatcctgccacctcagccacctgagtagttgggactacaggcgagtgccaccacgcccagcTATCATTTACCATCTGGTGCCATCCTCCAATAGACAGTGAACCATCTGTGATCAGGAACTGTGTCCATTCCATCTTCGTCAACCTTACAAACA-TATTTTTA---AAATGGAACTCTACCTATGATTACTAACCATTCTCCAAGACCCCTAGCCTACACTTTTCTGTAGATGAAAATGTCATACATCACAGAGTTTTA
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29338861 258 -  71996105 agcaatcctgccacctcagcctcctgagtagttgggactacaggccagtgccaccacgcccaactgtcatttaccatctggtgccatcctccattagacaatgaaccatctgtgatcaggaactgtgtccattccatcttcgtCAGGCTTACAAAC-TTATTTTTT---AAGTGGAACTCTACCTATGATTACTAACCATTCTCCAAGACCCCTAGCCTACACTTTTCTGTAGATGAAGATGTCATACATCACAGAGTTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      36893 259 -    735854 agcaatcctgccacctcagcctcctgagtagttgggactataggcgagtgccaccacgcccaactGTCATTTACCATCTGGTACCAGCCCCCATTAGACAATGAACAATCCATGATCAGGAACTATGTCCATTCCATCTTCGTCAGCCTTACGAACATTATTTTTT---AAGCGGAACTCTACCTATGATTACTAACCATTCCCCAAGACCCCTAGCCTGCACTTTTCTGTAGATGAAAATGTCATACATCACAGAGTTTTA
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17508862 39188 -  18854210 T
e aotNan1.NW_018496904v1      16854 24969 -    383796 I
e cebCap1.NW_016107755v1     526502 23853 -   1771730 I
e colAng1.NW_012115577v1      77375 1239 -   1829203 I
e cerAty1.NW_012002535v1     236646 2300 -    863181 M

a score=1067359.000000
s hg38.chr6_GL000254v2_alt  1320070 266 +   4827813 ACAATTAC-----TTAGTTTTCCCATCCACATTCACTGATTATTTATTTCGAGCATTATCATTTATTGAGCACAGCAGGGACTGGGGTCTTGTCCCCACcttagagggattatttacactgctataggtcacaagggtagtgaggggcagagagggagatggacccagctctcctgacgctggtcccaagctcttccctccacagtgtctacactctctcgAGGACTTTTTCTCCCTGTGCCAGTTC-----------CAGCAAAGGATCTCA-----------------------------------TTCAGCTCA
s panTro5.chr6             30190966 266 + 175400573 ACAATTAC-----TTAGTTTTCCCATCCACATTCACTGATTATTTATTTCGAGCATTATCATTTATTGAGCACAACAGGGACTGGGGTCTTGTCCCCACcttagagggattatttacactgctaaaggtcacaagggtagtgaggggcagagaggaagatggacccagctctcctgacactggtcccaagctcttccctccacagtgtctacactctctcgAGGACTTTTTCTCCCTGTGCCAGTTC-----------CAGCAAAGGATCTCA-----------------------------------TTCAGCTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30420867 266 + 173848474 ACAATTAC-----TTAGTTTTCCCATCCACATTCACTGATTATTTATTTCGAGCATTATCATTTATTGAGCACAACAGGGACTGGGGTCTTGTCCCCACcttagagggattatttacactgctaaaggtcacaagggtagtgaggggcagagaggaagatggacccagctctcctgacactggtcccaagctcttccctccacagtgtctacactctctcgAGGACTTTTTCTCCCTGTGCCAGTTC-----------CAGCAAAGGATCTCA-----------------------------------TTCAGCTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      75718 262 +   2037526 ACAATTAC-----TTAGTTTTCCCATCCACATTCACTGATTATTTATTTCGAGCATTATCATTTATTGAGCACAACAGGGACT-GGGTCTTGTCCCCACcttagagggatta-ttac-ctgctaaaggtcacaagggtagtgaggggcagagaggaagatggacccagctctcctgacactggtcccaagctcttccct-cacagtgtctacactctctcgAGGACTTTTTCTCCCTGTACCAGTTC-----------CAGCAAAGGATCTCA-----------------------------------TTCAGCTCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74766556 266 + 122973662 ACAATTAC-----TTAGTTTTTCCATCCACATTCACTGATTATTTATTTCGAGCATCATAATTTATTGAGCACAACCGGGACTGGGGTCTTGTCCCCACcttagagagattatttacactgctaaaggtctcaagagcagtgaggggcagagagggagatggacccagctcttctgacactggtcccaagcccttccttccacagtgtctaccctctctcgAGGACCTTTTCTCCCTGTGCCAGTTC-----------CAGCAAAGGGTCTCA-----------------------------------TTCAGCTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30580425 265 + 172585720 ACCATTAC-----TCAGTTTTCCCATCCACAGTCACTGATTATTTATTTTGATCATCATAATTTATTGAGCACAGCAGGGACTGGGGTCCTGTCCCCACcttagagggattatttacactgctaaaggtcacaagggtagtgaggg-tagagaggcagacagacccagctctcctgacactggtcccaagctcttccctccacagtgtctACCCTCTCTCAAGGACTTTTTCTCCCTGTTCCAGTTC-----------CAGCAAAGGGTCTTA-----------------------------------TTCAGCTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29948732 266 - 170955103 ACAATTTC-----TCAGTTTTCCCATCCATATTCACTGATTATTTATTTCGGTCATCATAATTTATTGAGCACAGCAGCGATTGGGGTCCTGTCCCCACcttagagggattatttacactgctaaaggtcacaagggtagggagggaaagagagggagatggacccagctctcctgacactggtcccaagcccttccctccacAGTGTCTACCCTCTCTCAAGGACTTTTTCTCCCTGCGCCAGTTC-----------CAGCAAAGGGTCTCA-----------------------------------TTTAGCTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     131623 266 +   1495729 ACAATTTC-----TCAGTTTTCCCATCCATATTCACTGATTATTTATTTCGGTCATCATAATTTATTGAGCACAGCAGCGATTGGGGTCCTGTCCCCACCTTAGAGGGATTATTTACACTGCTAAAGGTCACAAGGGTAGGGAGGGAAAGAGAGGGAGATGGACCCAGCTCTCCTGACACTGGTCCCAAGCCCTTCCCTCCACAGTGTCTACCCTCTCTCAAGGACTTTTTCTCCCTGCGCCAGGTC-----------CAGCAAAGGGTCTCA-----------------------------------TTTAGCTCA
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29339119 266 -  71996105 ACAATTTC-----TCAGTTTTCCCATCCATATTCACTGATTATTTATTTTGATCATCATAATTTATTGAGCACAGCAGGGACTGGGGTCCTGTCACCACcttagagggattatttacactgctaaaggtcacaagggtagtgagggaaagagagggagatggacccagctctcctgacactggtcccaagtccttccctccacAGTGTCTATCCTCTCTCAAGGACTTTTTCTCCCTGCGCCAGGTC-----------CAGCAAAGGGTCTCA-----------------------------------TTTAGCTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      37152 265 -    735854 ACAATTAC-----TCAGTTTTCCCATCCACATTCACTGATTATTTATTTTGATCATCATAATTTATTGAGCACAGACGGGACTGGGGTCCTGTCCCCACcttagagggattatttacactgctaaaggtcacaagggtagtgaggg-tagagaggcagacagacccagctctcctgacactggtcccaagcccttccctccacagtgtctaccctctctcgAGGACTTTTTCTCCCTGTTCCAGTTC-----------CAGCAAAGGGTCTTA-----------------------------------TTCAGCTCA
i manLeu1.NW_012107142v1   C 0 C 0
s otoGar3.GL873550         17469674 289 -  18854210 acaattacagccataagccaccatacccagccTCATTAATTATTTATGTTGACCATCATACTTTATTGAGCTCAGCAGGGACTGGGGTCC-----------------------TTTCAttgccaaaggtcacaag-gtaatgaggggcagagagggaga-ggactcagcacccctgaggtgctccccaa---cctccctccacaaagtctacactctttgcaGGATGTCTTCAGTATGTCTCAGTTCAGCTCACTGGGTAAAGAAGAATTTTAATATTTCAATCTAAATGATATCAATAGGTGGCACCCTtagctca
i otoGar3.GL873550         T 39188 I 110
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      16854 24969 -    383796 I
e cebCap1.NW_016107755v1     526502 23853 -   1771730 I
e colAng1.NW_012115577v1      77375 1239 -   1829203 I
e cerAty1.NW_012002535v1     236646 2300 -    863181 M

a score=518356.000000
s hg38.chr6_GL000254v2_alt  1320336 152 +   4827813 CCCCCA-------------------AGAAGACT----------------TTTAATACTTCAATGA-CG---A-TGATACT--------------------------------------------------------------------------------------AATAATAATAATA-------TG--------CAAAGTTTGTTCCA---------ACGCATTTAGAGGTGATCGAGACAAGACACGAAGCCAATCCCTCCCTTTCT-GGGGCAGGGGAGGCAGTGATGATCTTGGACTT
s panTro5.chr6             30191232 152 + 175400573 CCCCCA-------------------AGAAGACT----------------TTTAATACTTCAATGA-CG---A-TGATACT--------------------------------------------------------------------------------------AATAATAATAATA-------TG--------CAAAGTTTGTTCCA---------ACGCATTTAGAGGTGATCGCGACAAGACATGAAGCCAATCCCTCCCTTTCT-GGGGTAGGGGAGGCAGTGATGATCTTGGACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30421133 152 + 173848474 CCCCCA-------------------AGAAGACT----------------TTTAATACTTCAATGA-CG---A-TGATACT--------------------------------------------------------------------------------------AATAATAATAATA-------TG--------CAAAGTTTGTTCCA---------ACGCATTTAGAGGTGATCGCGACAAGACATGAAGCCAATCCCTCCCTTTCT-GGGGTAGGGGAGGCAGTGATGATCTTGGACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      75980 152 +   2037526 CCCCCA-------------------AGAAGACT----------------TTTAATACTTCAATGA-CG---A-TGATACT--------------------------------------------------------------------------------------AATACTAATAATA-------TG--------CAAAGTTTGTTCCA---------ACGCATTTAGAGGTGATCACGACCAGACATGAAGCCAATCCCTCCCTTTCT-GGGGTAGGGGAGGCAGTGATGATCTTGGACTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74766822 152 + 122973662 CCCCCA-------------------AGAAGACT----------------TTTAATACTTCAATGA-CG---ACTAATAAT--------------------------------------------------------------------------------------ATAAATAATAATA-------TG--------CAAAGTTTGTTCCA---------ACGCATTTAGAGGTGATCGCGACCAGACATGAGGCCAATCCCTCCTTTTCT-GGGATAGGGGA-GCTGTGATGATCTTGGACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30580690 153 + 172585720 CCCCCA-------------------AAAAGACT----------------TTTAATACTTCAATGG-CG---a-taataat--------------------------------------------------------------------------------------aataataataataata--------------TGCAGTTTGTTCCT---------ACGCATTTAGAGGTGATCACGACAAGACGGGAAGCCAATCCCTCCCTTTTT-GGGGTAGGGGAGGCCCTGATGATCTTGGACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29948998 170 - 170955103 CCCCCA-------------------AAAAGACT----------------TCTAATACTTCAATGA-CGataa-taataat--------------------------------------------------------------------------------------aataataataataataataataataataCGTAAAGCTTGTTCCA---------ACGCATTTAGATGTGATCGCGACAAGACAAGAAGCCAATCCCTCCCTTTCT-GGGGTAGGGGAGGCCGTGATGATCTTGGACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     131889 167 +   1495729 CCCCCA-------------------AAAAGACT----------------TCTAATACTTCAATGA-CG---a-taataat--------------------------------------------------------------------------------------aataataataataataataataataataCGTAAAGCTTGTTCCA---------ACGCATTTAGATGTGATCGCGACAAGACAAGAAGCCAATCCCTCCCTTTCT-GGGGTAGGGGAGGCCGTGATGATCTTGGACTT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29339385 149 -  71996105 CCCCCA-------------------AAAAGACT----------------TTTAATACTTCAATGA-CG---A-TGATGGT--------------------------------------------------------------------------------------AATAATAATA----------TG--------TAAAGCTTGTTCCA---------ACGCATTTAGATGTGATTGCGACAAGACAAGAAGCCAATCCCTCCCTTTAT-GGGATAGGAGAGGCTGTGATGATCTTGGACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      37417 159 -    735854 CCCCCC-------------------AAAAGACT----------------TTTAATACTTCAATGA-CG---a-taataat--------------------------------------------------------------------------------------aataataataataataataTTA--------TGCAGTTTGTTCCT---------ACGCATTTAGAGGTGATCATGACAAGACGGGAAGCCAATCCCTCCCTTTTT-GGGGTAGGGGAGGCCCTGACGATCTTGGACTT
i manLeu1.NW_012107142v1   C 0 C 0
s otoGar3.GL873550         17470073 289 -  18854210 tccccactgcttgggaggctgtggcaagagaatcacttgagcccaagagtttgagattgctgtgagct---a-tgacaccaccacagcactctaccaagggtgacaaagtgagactctgtctcaaaaaaaagaaagaaagaaaAAGAAAAAAAGAAAAGAAAAGAAAATGATAACAATACTAAATATG--------AAAGATTTGTTCTAAGGCATTTGAGGCATTTGGAGGAGATGGCCAGGAGACATGAAGCTGATCTCCCACTTTCTAGGGGAAGGGGAGGCCCTAATGATCTTGGAT--
i otoGar3.GL873550         I 110 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      16854 24969 -    383796 I
e cebCap1.NW_016107755v1     526502 23853 -   1771730 I
e colAng1.NW_012115577v1      77375 1239 -   1829203 I
e cerAty1.NW_012002535v1     236646 2300 -    863181 M

a score=1711368.000000
s hg38.chr6_GL000254v2_alt  1320488 383 +   4827813 TGGATGAG---TCGCTCCCC-AGGGTCTAGGCCTGGCTGCCCCTCACCAACCAAATCTCCCAGGTC-TTTTCTGTCCAAAGCCCTCCCCCTCTACCCTA---CCTCCAGCC-CCTTCTGCTCTGAGCCATCAACTACGTTTTCTCCCTC--AGCACTCGCCTTAGATTCCTGGACTTACCAGCACAAAGGTGATTTTCTCCTCGCAGACTGTAGGCGCCACTGCTGGGTCCGGAAAAGAAAGAGAAAAGGCCCAGCGTGGTCGCG-------TGTGTAACTCAGGACGC-GGCTGCGCTGGGCGCCCGAGCGCGT-----TCTCAGGACTGCG--------------GCCCGGAGTTCACTGCGAGGACTGGGATCACCCATCACCCCGCCCTGGTCTACGGAAAAT-GACAAGTGTTTACT
s panTro5.chr6             30191384 383 + 175400573 TGGATGAG---TCGCTCCCT-AGGGTCTAGGCCTGGCTGCCCCTCCCCAACCAAATCTCCCAGGTC-TTTTCTGTCCAAAGCCCTCCCCCTCTACCCTA---CCTCCAGCC-CCTTCTGCTCTGAGCCATCAACTACGTTTTCTCCCTC--AGCACTCGCCTTAGATTCCTGGACTTACCAGCACAAAGGTGATTTTCTCCTCGCAGACTGCAGGCGCCACTGCTGGGTCCGGAAAAGAAAGAGAAAAGGCCCAGCGCGGTCGCG-------TGTGTAACTCAGGACGC-GGCTGCGCTGGGCGCCCGAGCGCGT-----TCTCAGGACTGCG--------------GCCCGGAATTCACTGCGAGGACTGGGATCACCCATCATCCCGCCCTGGTCTACGGAAAAT-GACAAGTGTTTACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30421285 382 + 173848474 TGGATGAG---TCGCTCCCT-AGGGTCTAGGCCTGGCTGCCCCTCCCCAACCAAATCTCCCAGGTC--TTTCTGTCCAAAGCCCTCCCCCTCTACCCTA---CCTCCAGCC-CCTTCTGCTCTGAGCCATCAACTACGTTTTCTCCCTC--AGCACTCGCCTTAGATTCCTGGACTTACCAGCACAAAGGTGATTTTCTCCTCGCAGACTGCAGGCGCCACTGCTGGGTCCGGAAAAGAAAGAGAAAAGGCCCAGCGCGGTCGCG-------TGTGTAACTCAGGACGC-GGCTGCACTGGGCGCCCGAGCGCGT-----TCTCAGGACTGCG--------------GCCCGGAGTTCACTGCGAGGACTGGGATCACCCATCATCCCGCCCTGGTCTACGGAAAAT-GACAAGTGTTTACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      76132 384 +   2037526 TGGAGGAG---TCGCTCCCC-AGGGTCTAGGCCTGGCTGCCCCTCCCCAACCAAATCTCCCAGGTC-TTTTCTGTCCAAAGCCCTCCCCCTCTACCCTA---CCTCCAGCC-CCTTCTGCTCTGAGCCATCAACTACGTTTTCTCCCTC--AGCACTCGCCTTAGATTCCTGGACTTACCAGCACAAAGGTGATTTTCTCCTCGCAGACTGTAGGCGCCACTGCTGGGTCCGGAAAAGAAAGAGAAAAGGCCCAGCGCGGTCGCG-------TGTGTAACTCAGGACGCGGGCTGCGCTGGGCGCCCGAGCGCTT-----TCTCAGGACTGCG--------------GCCCGGAGTTCACTGCGAGGACTGGGATCACCCATCATCCCGCCCTGGTCTACGGAAAAT-GACAAGTGTTTACT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74766974 387 + 122973662 TAGGGTGGAGTTCTCTCCCCAAGGGTCTTAGCCTGGCTGCTCCTCCCCAACCAAATCTCCCAGGTC-TTTTCTGTCCAAAGCCCTCCCCCTCTACCCCA---CCTCTAGCC-CCTTCTGTTCTGACCCATCAACTACGTTTTCTCCCTC--AGCACTCGCCTTAGATTCCTGGACTTATCAGCACACAGGCGATTTTCTTCTCGCAGACTTTAGGCGCCGCTGCTGGGTCCGGAAAAGAAAGAGAAACGGGCCAGCGCGGTCGCC-------CGTGTAACTCAGGACGC-GGCTGCGCTGGGCGCCCGCGTGCGT-----TTTCAAGTCTGCG--------------GCCCGGAGTTCACTGCGAGGACTGGGATCACCCATCACCCCGCCCTGGTCTACGGAAAAT-GACAAGTGTTTACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30580843 381 + 172585720 TGGGCGAG---TGGCTCCCC-A-GGTCTAGGCCTGGCTG-CCCTCCCTAAACAAATCCCCCAGGTC-TTTTCTGTCCAAAGCCCTCCCCCTCTATCCCA---TCTCCAGCC-TCTTCTCTTCAGGCCCATCAACGACGCTTTCACCCTC--AGCACTTGCCTTAGATTCCTGGACTTACCAGCACACAGGAAATTTTCTCCTCGCAGACATTAGGCGCCACTGCTGGGTCCGGAAAAGAAAGAGAAACGTCCCAGCACGGTCGCT-------TGTGTAACTCAGGACGA-GGCTGCGCTATGCGCCCGCGCGCTT-----TTTCAAGTCTGTG--------------GCCCGGAGTTCACTTTGAGGACTGGGATCACCCGTCACCCCGCCCTGGTCTACGGAAAAT-GAAATGTGTTTACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29949168 389 - 170955103 CCGGTGAG---TCGCTCCCC-AGGGTCTAGGCCTGGCTGCCCCTCCCCAACCAAACCTCCCAGGTC-TTTTCTGTCCAAAGCCCTCCCCCTCTACCCAA---CCTCCAGCC-GCTTCTTCCCAGGTCCATCAACTACGTTTTCTCTCTC--AGCACTCGCCTTAGATCCCTGGACTTACCAGCACACAGGCGATTTTCTCCTTGCAGAT-TTAGGCGCCACTGCTGGGTCCGGAAAAGAAAGAGAAACGGCCCAGTGCGGTCGCCTGCCGCATGTGTAACTCAGGACGG-GGCTGCGCTGGGAGCCCACGCGCGT-----TTTCAAGTCTGCG--------------GCCTGGAGTTCACTGCAAGGACTGGGATCACCCGTCACCCCGCCCTGGTCTACGGAAAAC-GAAACGTGTTCACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     132056 389 +   1495729 CCGGTGAG---TCGCTCCCC-AGGGTCTAGGCCTGGCTGCCCCTCCCCAACCAAACCTCCCAGGTC-TTTTCTGTCCAAAGCCTTCCCCCTCTACCCAA---CCTCCAGCC-GCTTCTTCCCAGGTCCATCAACTACGTTTTCTCTCTC--AGCACTCGCCTTAGATCCCTGGACTTACCAGCACACAGGCGATTTTCTCCTTGCAGAT-TTAGGCGCCACTGCTGGGTCCGGAAAAGAAAGAGAAACGGCCCAGTGCGGTCGCCTGCCGCATGTGTAACTCAGGACGG-GGCTGCGCTGGGAGCCCACGCGCGT-----TTTCAAGTCTGCG--------------GCCTGGAGTTCACTGCAAGGACTGGGATCACCCGTCACCCCGCCCTGGTCTACGGAAAAC-GAAACGTGTTCACT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29339534 390 -  71996105 CGGGTGAG---TCGCTCCCC-AGGGTCTAGGCCTGGCTG-CCCTCCCCAACCAAACCTCCCAGCTC-TTTTCTGCCCAAAGCCCTCCCCCTCTACCCAA---CCTCCAGCC-GCTTCTTCCCAGGCCCATCAACTACGTTTTCTCCCTC--AGCTCTCGCCTTAGATCCCTGGACTTACCAGCACACAGGCGATTTTCTCCTCGTAGACTTCAGGCGCCACTGCTGGGTCCGGAAAAGAAAGAGAAACGGCCCAGCACGGTCGCGGGTCGCGTGTGTAACTCAGGACAG-GGCTGCGGTGGGAGCCCGCGCGCGT-----TTTCAAGTCTGCG--------------GCCCGGAGTTCACTGCGAGGACTGGGATCACCCGTCACCCCGCCCCGGGCTACGGAAAAATGACAAGAGTTTACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      37576 381 -    735854 CGGGCGAG---TGGTTCCCC-A-GGTCTAGGCCTGGCTG-CCCTCCCTAAACAAATCCCCCAGGTC-TTTTCTGTCCAAAGCCCTCCCCCTCTATCCCA---TCTCCAGCC-TCTTCTCTTCAGGCCCATCAACGACGCTTTCACTCTC--AGCACTTGCGTTAGATTCCTGGACTTACCAGCACACAGGAAATTTTCTCCTCGCAGACTTTAGGCGCCACTGCTGAGTCCGGAAAAGAAAGAGAAACGTCCCAGCAC-------GGTCGCTTGTGTAACTCAGGACGA-GGCTGCGCTATGTGCCCGCGCGCTT-----TTTCAAGTCTGTG--------------GCCCGGAGTTCACTGCGAGGACTGGGATCACCCGTCACCCCGCCCTGGTCTACGGAAAAA-GAAATGTGTTTACT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      78614 376 -   1829203 TGGGTGAG---TCGCTCCCC-AGGGTCTAGGCCTGGCTGCCCCTCCCCAACCAAACCTCCCAGGTC-GTTTCTGCCCAAAGCCTTGTCCCTCTACCCAA---CC-CCAGCC-CCTTCTTCTCAGACCCATCAACTACGTTTTCTCCCTC--AGCACTCGCCTTAGATCCCTGG----------ACACAAGCGATTTTCCCCTCGCAGACTTTAGGCGCCACTGCTGGGTCCGGAAGAGAAAGAGAAACTGCCCAGCGCGGTCGCGGGTCGTTTGTGTGACTCACGACGG-GGCTGCTCTGGGCGCCCGCGCGCGT-----TTTCAAGTC---G--------------GCCCGGAGTTCATCGCGAGGACTGGGTTCACCCGTCACCCCGCACTGGTCTATGGAAAAC-GAGACGTGTTTACT
i colAng1.NW_012115577v1   I 1239 C 0
s otoGar3.GL873550         17470362 397 -  18854210 ---GTGAG---TCACTCCCT-AAGACCCAGGCCTGGCCACCCCTCTCCCACCAACCCTTCTAGGTCAACTTCTGTACAAAATCCTTTCACTTCACCCCAACCTCTCCAGCCTCCTCCTTCTCTGATTCAGAAACTACTTTTTCTCCCCTCAATCACCCCCTCTGGACCCCTGGACTCACGAGAATAAAGACGACTTTCTCTCCTCAGACCTTGTGTGTCACTGCTGCCTCCAAAAGTGAAAGAGAAACTTCCCAGTGCTGTCTGT-------TACACACCCCAGGGTAG-GGTGAGGCT--GTGCTCAACTGCTTGGAAATTTCCAGTCAGCACCGCCCTTCCACCCACCCCAAGTTTACTGGGAGGACTGAAA------ATTAAGATAATCTGGCCTAAGGAAAAT--AAAAATACTTAtt
i otoGar3.GL873550         C 0 N 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      16854 24969 -    383796 I
e cebCap1.NW_016107755v1     526502 23853 -   1771730 I
e cerAty1.NW_012002535v1     236646 2300 -    863181 M

a score=1151825.000000
s hg38.chr6_GL000254v2_alt  1320871 249 +   4827813 GATATAGAAACGGAATAACGGCG-CTGTGGGCTGGGGAGG----GCCGAGCTGCCTTCAGGGTTCTGGTCTCCAGCTGCGGGGCACTCACACCTGCCGCTGTGAAAATGCAGACCCGCGGGGCAGGAATTCCGAGTCCGGGCTGGAGCGCGATCTGGAATCTGACTCGCTTGAAACAGCACCGCGGTGGATTCGGAGCCGGGTGAGCAGGGAACTGCGCCTCAGCCCCTCCCACGGGCCGCCCACTGATTCCAG
s panTro5.chr6             30191767 249 + 175400573 GATATAGAAACAGAATAACGGCG-CTGTGGGCTGGGGAGG----GCTGAGCTGCCTTCAGGCTTCTGGTCTCCAGCTGCGGGGCACTCACACCTGCCGCTGTGAAAATGCAGACCCGCGGGGCAGGAATTCCGAGTCCGGGCTGGAGCGCGATCTGGAATCTGACTCGCTTGAAACAGCACCGCGGTGGATTCGGAGCCGGGTGAGTAGGGAAAGGCGCCTCAGCCCCTCCCACCGGCCGCCCACTGATTCCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30421667 249 + 173848474 GATATAGAAACAGAATAACGGCG-CTGTGGGCTGGGGAGG----GCTGAGCTGCCTTCAGGCTTCTGGTCTCCAGCTGCGGGGCACTCACACCTGCCGCTGTGAAAATGCAGACCCGCGGGGCAGGAATTCCGAGTCCGGGCTGGAGCGCGATCTGGAATCTGACTCGCTTGAAACAGCACCGCGGTGGATTCGGAGCCGGGTGAGTAGGGAAAGGCGCCTCAGCCCCTCCCACCGGCCGCCCACTGATTCCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      76516 249 +   2037526 GATATAGAAACTAAATAACGGTG-CTGTGGGCTGGGGAGG----GCCGAGCTGCCTTCAGGCTTCTGGTCTCCAGCTGCGGGGCACTCACACCTGCCGCTGTGAAAATGCAGACCCGCGGGGCAGGAATTCCGAGTCCGGGCTGGAGCGCGATCTGGAATCTGACTCGCTTGAAACAGCACCGCGGTGGATTCGGAGCCGGGTGAGTAGGGAACTGCGCCTCAGCCCCTCCCACGGGCCGCCCACGGATTCCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74767361 248 + 122973662 GATATAGAAACGGAATAACGGCG-CTGTGGGCTGTGGATG----GCGGAGCTGCCTTCAGGCTTCTGGTCTCCAGC-GCGGGGCACTCACACCTGCCGCTGTGAAAATGCAGACCCGCGGGGCAGGAATTCCGAGTCCAGGCTGGAGCGCGATCTGGAATCTGTCTCGCTTGAAACAGCACCGCGGTGGATTCGGAGCCGGGTGAGCAGGGAAATGCGCCTCAGCCTCTCCCACGGGCCGCCCACGGATTCCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30581224 248 + 172585720 GATGTAGAAACTGAAAAACGGCG-CTGCGGGCTGGGGAAG----GCCGAGCTGCCTTCAGGCTTCTGGCCTCCAACTGCGGGTCACTCACACCTGCCGCTGTG-AAATGCAGACCCGCGGGGCAGGAATTCCGAGTCCGGGCTGGAGCGCGATCTGGATTGTGACTCGCTTGAAACAGCACCGCGGTGGATTCGGAGCCGGGTGAGTAGGGAAATGCGCCTCAGTCCCTCCCACGGGCCGCCCACGGATTCCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29949557 241 - 170955103 GATATAGAAACGGAATAACGGC--------GCTGGGGAGG----GCGGAGCTGCCTTCAGGCTTCTGGTCTCCAGCTGCGGGTCACTCACACCTGCCGCTGTG-AAATGCAGACCCGCGGGGCAGGAATTCCGAGTCCGGGCTGGAGCGCGATCTGGAATCTGACTCGCTTGAAACAGCACCGCGGTGGATTCGGATCCGGGTGAGTAGGGAAATGCGCCTCAGCCCCTCCCACGGGCCGCCCACGGATTCCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     132445 241 +   1495729 GATATAGAAACGGAATAACGGC--------GCTGGGGAGG----GCGGAGCTGCCTTCAGGCTTCTGGTCTCCAGCTGCGGGTCACTCACACCTGCCGCTGTG-AAATGCAGACCCGCGGGGCAGGAATTCCGAGTCCGGGCTGGAGCGCGATCTGGATTGTGACTCGCTTGAAACAGCACCGCGGTGGATTCGGATCCGGGTGAGTAGGGAAATGCGCCTCAGCCCCTCCCACGGGCCGCCCACGGATTCCAG
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29339924 248 -  71996105 GATATAGAAACGGAATAACGGCG-CTGTGGGCTGGGGAGG----GCGGAGCTGCCTTCAGGCTTCTGGTCTCCAGCTGCGGGTCACTCACACCTGCCGCTGTG-AAATGCAGACCCGCGGGGCAGGAATTCCGAGTCCGGGCTGGAGCGCGATCTGGAATCTGACTCGCTTGAAACAGCAGCGCGGTGGATTCGGAGCCGGGTGAGTAGGGAAATGCGCCTCAGTCCCTCCCTCGGGCCGCCCACGGATTCCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      37957 248 -    735854 GATGTAGAAACTGAATAACGGCG-CTGCGGGCTGGGGAGG----GCGGAGCTGCCTTCAGGCTTCTGGTCTCCAGCTGCGGGTCACTCACACCTGCCGCTGTG-AAATGCAGCCCCGCGGGGCAGGAATTCCGAGTCCGGGCTGGACCGCGATCTGGAATCTGACTCGCTTGAAACAGCACCGCGGCGGATTCGGAGCCGGGTGAGTAGGGAAATGCGCCTCAGTCCCTCCCACGGGCTGCCCACGGATTCCAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      78990 253 -   1829203 GATACAGAAACGGAACGACGGCGCCTGCCTGCTGGGGGAGGGGCGCGGAGCTGCCTTCAGGCTTCTGGTTTCCAGCTGCGGGTCACTCACACCTGCCGCTGTG-AAATGCAGACCCGCGGGGCAGGAATTCCGAGTCCAGGCTGCAGAGCGATCTGGAATCTGACTCACTTGAAACAGCACCGCGGTGGATTCGGAGCCAGGTGAGTAGGAAAATGCGCCTCAGCCCCTCCCACGGGTCGCCCACTGATTCCAG
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      16854 24969 -    383796 I
e cebCap1.NW_016107755v1     526502 23853 -   1771730 I
e cerAty1.NW_012002535v1     236646 2300 -    863181 M

a score=5383249.000000
s hg38.chr6_GL000254v2_alt  1321120 1053 +   4827813 GATCCGAAAACGCTTCCAGCTGCTCCGTCACCCCAGGAAGGCAGCGCCGGCCACTGGGCGGTTCTGGTGGAAACGGGCTCCGCCGCCCGCAGGAAAACTCACAACTAAGGGACCAGGAAAAAGCCTCTCAGGGTCGCGCGCCTTCAGTGAGGATCCTAATTTACACCCCGAGTGTGGCCCCGTCAAAGACTAGAGCGAAGGTCACTGAAATGACACAAGATCAGCGAGGCCCAGGGCGCTGCCGCTCACAGAATGCGGAGACACGGCTGCCTCGCGTCCCTTCCCTGACCTG-CCCCAGGCGGACGCGGTGACGTGTGTTTGCCTCGAGGCTGGAATACA-TGGGGATCAAATGCAGAGAATGGAGAAAGGAGGGAAGGAT-----GGGGGGACATTTCGAGGAAAGGAAGGGAGAGGGAGAAAAGGGGAGAGAAAAGGTGAAGGTGAGAATAATATCTGAAAGA-TGTAGTTTTATTATTTCTAA-TTTTATTTTTGCCCTTTATCTAGTTTTGTTATTTATGAACATTTTTACCAAAG-CTTTTTTTTCTCTGTGTGTGAATCTGTAAATATACGGCTTATTATTCTTATTTCAGAGCCTGCGA---GGTCAAGCTGCAGAGAACATGAGCTTCTACCTCCAGATGTGCCAGGGTGCATCTCGTGGGTGCAAGAACAA------GGGTTTTGTTTTG-TTTTACAAAATCAAAGTACAAATCTCAAATAGAATAATAtttttaaaccattattgggacatactttgcacacaatcagtgtatctatttgaaatgcacagctcattgagttgtactgcttggctgttttacacacccacatatccactaccacaatgaagataaagaaataacatttccatagtcccctaaagAATAGCCACGCGATAAAATTCCACGCAGTCCTTAAAAAGAGGAGGATAAATTTGTAAGTATTGTTATGAGAAGATCTGTGCCCAGCCTACTTTTATCCATTTTTAAAAGGACGA-GGATATATGGAATTATAA-----TACCAGTAATACCACTTACATAATATATATTTTAAGTAGGGGAAAAC
s panTro5.chr6             30192016 1052 + 175400573 GATCCGAAAACGCTTCCAGCTGCTCCGTCACCCCTGGAAGGCAGCGCCGGCCTCTGGGCGGTTCTGGTGGAAACGAGCTCCGCCGCCCGCAGGAAAACTCACAACTAAGGGACCAGGAAAAAGCCTCTCAGGGTCCCGCGCCTTCAGTGAGGATCCTAATTTACACCCCGAGTGTGGCCCCGTCAAAGACTAGAGCGAAGGTCACTGAAATGACACAAGATCAGCGAGTCCCAGGGCGCTGCCGCTCACAGAATGCGGAGACCAGGCTGCCTCGCGTCCCTTCCCTGACCTG-CCCCAGGCGGACGCGGTGACGTGTGTTTGCCTCGAGGCTGGAATACA-TGGGGATCAAATGCAGAGAATGGAGAAAGGAGGGAAGGAT-----GGGGGGACATTTCGAGGAAAGGAAGGGAGAGGGAGAAAAGGGGAGAGAAAAGGTGAAGGTGAGAATAATATCTGAAAGA-TGTAGTTTTATTATTTCTAA-TTTTATTTTTGCCCTTTATCTAGTTTTGTTATTTATGAACATTTTTACCAAAG-CTTTTTTTTCTCTGTGTATGAATCTGTAAATATACGGCTTATTATTCTTATTTCAGAGCCTGCGA---GGTCAAGCTGCAGAGAACATGAGCTTCTACCTCCAGATGTGCCAGGGTGCATCTCGTGGGTGCAAGAACAA------GGGTTTTGTTTTG-TTTTACAAAATCAAAGTACAAATCTCAAATAGAATAATATTTCTAAACCATTATTGGGACATACTTTGCATA-AATCAGTGTATCTATTTGAAATGTACAGCTCATTGAGTTGTACTGCTTGGCTGTTTTACACACCCACATATCCACTACCACAATGAAGATAAAGAAATAACATTACCATAGTCCCCTAAAGAATAGCCACGCGATAAAATTCCATGCAGTCCTTAAAAAGAGGAGGATAAATTTTTAAGTATTGTTATGAGAAGATCTGTGCCCAGCCTACTTTTATCCATTTTTAAAAGGACGA-GGATATATGGAATTATAA-----TACCAGTAATACCACTTACATAATATATATTTTAAGTAGGGGAAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30421916 1052 + 173848474 GATCCGAAAACGCTTCCAGCTGCTCCGTCACCCCTGGAAGGCAGCGCCGGCCTCTGGGCGGTTCTGGTGGAAACGGGCTCCGCCGCCCGCAGGAAAACTCACAACTAAGGGACCAGGAAAAAGCCTCTCAGGGTCCCGCGCCTTCAGTGAGGATCCTAATTTACACCCCGAGTGTGGCCCCGTCAAAGACTAGAGCGAAGGTCACTGAAATGACACAAGATCAGCGAGTCCCAGGGCGCTGCCCCTCACAGAATGCGGAGACCAGGCTGCCTCGCGTCCCTTCCCTGACCTG-CCCCAGGCGGACGCGGTGACGTGTGTTTGCCTCGAGGCTGGAATACA-TGGGGATCAAATGCAGAGAATGGAGAAAGGAGGGAAGGAT-----GGGGGGACATTTCGAGGAAAGGAAGGGAGAGGGAGAAAAGGGGAGAGAAAAGGTGAAGGTGAGAATAATATCTGAAAGA-TGTAGTTTTATTATTTCTAA-TTTTATTTTTGCCCTTTATCTAGTTTTGTTATTTATGAACATTTTTACCAAAG-CTTTTTTTTCTCTGTGTATGAATCTGTAAATATACGGCTTATTATTCTTATTTCAGAGCCTGCGA---GGTCAAGCTGCAGAGAACATGAGCTTCTACCTCCAGATGTGCCAGGGTGCATCTCGTGGGTGCAAGAACAA------GGGTTTTGTTTTG-TTTTACAAAATCAAAGTACAAATCTCAAATAGAATAATAtttttaaaccattattgggacatactttgcata-aatcagtgtatctatttgaaatgtacagctcattgagttgtactgcttggctgttttacacacccacatatccgctaccacaatgaagataaagaaataacatttccatagtcccctaaagAATAGCCACGCGATAAAATTCCATGCAGTCCTTAAAAAGAGGAGGATAAATTTTTAAGTATTGTTATGAGAAGATCTGTGCCCAGCCTACTTTTATCCATTTTTAAAAGGACGA-GGATATATGGAATTATAA-----TACCAGTAATACCACTTACATAATATATATTTTAAGTAGGGGAAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      76765 1053 +   2037526 GATCCGAAAACGCTTCCAGCTGCTCCGTCACCCCTGGAAGGCAGCGCCGGCCTCTGGGCGGTTCTGGTGGAAACGGGCTCCGCTGCCCGCAGGAAAACTCACAACTAAGGGACCAGGAAAAAGCCTCTCAGGGTCCCGCGCCTTCAGTGAGGATCCTAATTTACACCCCGAGTGTGGCCCCGTCAAAGACTAGAGCGAAGGTCACTGAAATGACACAAGATCAGCGAGGCCCAGGGCGCTGCCGCTCACAGAATGCGGAGACACGGCTGCCTCGCGTCCCTTCCCTGACCTG-CCCCAGGCGGACGCGGTGACGTGTGTTTGCCTCGAGGCTGGAATACA-TGGGGATCAAATGCAGAGAATGGAGAAAGGAGGGAAGGAT----GGGGGGGACATTTCGAGGAAAGGAAGGGAGAGGGAGAAAAGGGGAGAGAAAAGGTGAAGGTGAGAATAATATCTGAAAGATTGTAGTTTTATTATTTCTAA-TTTTATTTTTGCCCTTTATCTAGTTTTGTTATTTATGAACATTTTTACCAATA-C--TTTTTTCTCTGTGTGTGAATCTGTAAATATACGGCTTATTATTCTTATTTCAGAGCCTGCGA---GGTCAAGCTGCAGAGAACATGAGCTTCTACCTCCAGATGTGCCAGGGTGCATCTCGTGGGTGCAAGAACAA------GGGTTTTGTTTTGTTTTTACAAAATCAAAGTACAAATCTC-AATAGAATAATAtttttaaaccattattgggacatactttgcacacaatcaatgtatctatttgaaacgcacagctcattgagttgtactgcttggctgttttacacacccacatatccactaccacaatgaagataaagaaataacatttccatagtcccctaaagAATAGCCACGCGATAAAATTCCATGCAGTCCTTAAAAAGAGGAGGATAAAGTTTTAAGTATTGTTATGAGAAGATCTGTGCCCAGCCTACTTTTATCCA-TTTTAAAAGGACGAGGGATATATGGAATTATAA-----TACCAGTAATACCACTTACATAATATATATTTTAAGTAGGGGAAAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74767609 1046 + 122973662 GATCCGAAAACGCTTCCAGATGCTGCGTCACCCCAGGACGACTGCGACCGCTTCTGGGCAGTTCTGATGGAAACGGGCTCCGCCGCCCGAAGGAAAACCCACAACTAAGGGGCCAGGAAAAAGCCTCTCAGGGTCCCGCCCCTTCAGTGAGGATCCTAATTTACACCCCGA-TGTGGCCCCGTCAAAGACTGGAGCTAAGGTTCCTGAAATGATACAAGACCAGCGGGGCACAGGGCGCTGCCGCTCACAGAATCCAGTGACAGCTCCGCCTCGCGTCCCTTCCCTGACCTG-CCCCAGGCAGACGCGGTGACGTGTGTTGGCCTCGAGGCTGGAATACA-TGGGGATCAAAAGCAAAGAGTGGAGAAAGGAGAGAAGGAT-----GCTGGGACGTTTGGAAGAAAGGAAGGGAGAGGGAGAAAAGGGGAGAGAAAAGGTGAAGGTGAGCACAATATTTGAAAGA-TGTGGTTTTATTATTTCTAACTTTTATTTTTGCCCTTTATCTAGTTTTGTTATTTATGAACATTTTTACCGTAG-A-TTTTTTTCTCTGTGTATGAATCTGTAAATATACGGCTTATTATTCTTATTTCAGAGCTTGCGA---GGTCAAGCTGCAGAGAGCATGAGCTTCTACCTCCAGATGTGCCAGGTTGCATCTCATGGGTACAAGAACAA------GGGTTTTG------TTTTACAAAATCAAAGTACCAACCTCAAATAGAATAATAttttaaaattattattgggacatactttgcatacaataaatgtgtctatttgaaatgtacagctcattgagttgtactgtttggctgttttagacacccacatatccgctaccacaatgaagataaagaaatagcctttccatagtcccctaaagAACAGCCATGCGATAAAATTGCATGCAGTCGTTAAAAAGGGGAGGATGAATTTTTAAGCATTGTTATGAGAAGATCTGTGCCCAGCCTACTTTTACCCATTTTTAAAAGGACGA-GGATATACGGAATTATAA-----TACCAGTAATACCACTTACATAATATATA-TTTAAGTAGGGGAAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30581472 1060 + 172585720 GATCCGAAAACGCTTCCTGCTGCTCCGTCTCCCCGGGAAGGCAGAGACCGCCTCTGGGCCGTTCTGATGGAAAGGGGCTCAGTCGTCCGAAGGAAAACCCACAACTAACAGGCCAGGAAAAAGCCTCCCAGGGTCCCGCCCCTTCAGTGAGGATCCTAATTTACTCCCCGAGTGTGGCCCCATCAAAGACTGGAGCGAAGGTCACCGAAATGATACAAGATCAGCGGGGCCCAGGGCGCTGCGGCTCACGGAATCCGGTGATAGCGCTGCCTCGCGTCCCTTCCCTGACCTG-CCCCAGGCCGACGCGGTGACGTGTGTTGGCCTCCAGGCTGGAATACA-TGGGGATCGAAAGCAGAGAACGGAGAAAGGAGGGAAGAAT----GGGGGGGACGCTTCGAAGAAAGGAAGGGAGGGGGAGAAAAGGGGAGAGAAAAGGTGAAGGTGAGAATAATATTTGAAAGA-TGTAGTTTTATTATTTCTAACTTTTAATTTTGCCCTTTATCTGGTTTTGTTATTTATGAACATTTTTACCATAG-CTTTTTTCTCTCTGTGTGTCAATCTGTAAATATACGGCTTATTATTCTTATTTCAGAGCCTGCGAGGTGGTCAAGCTGCAGAGAACACGAGCTTCTACCTCCAGATGTGCCAGGGTGTATCTCTCGGGTACAAAAACAA------GGGTTTTGTTTTG-TTTTACAAAGTCAGAGTACAAACCTCAAATAGGGTAATAtttttaaaccattattgggacatactttgcatacaataaatgtatgtatttgaaatgtacagctcatggagttgtactgcttcgctgttttacacaaccacatatctgctaccacaatggagataaagaaataacatttccatagtcctctaaagaacagtcatgcGTTAAAATTCCATGCAGTCCTTAAAAAGAGGATGATGAATTTTTAAGTATTGTTATGAGAAGATCTGTGCCCAGCCTACTTTTACTCATTTTTAAAAGGATAA-GGATGTATGGA--TGTAAGGATGTACCACTAATGCCATTTACATAATATATATTTTAAGTAG-GGAAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29949798 1049 - 170955103 GATCCGAAAATGCTTCCTGCTGCTCCGCCACCCCTGGAAGGCAGCGCCCGCCTCTGGGCGGTTCTGATGGAAACGGGCTCCACCGCCCGCAGGAAAACCCACAACTAAGGGGCCAGGAAAAAGCCTCTCAGGGTCCCGCCACTTCAGTGAGGATCCTAATTTACACCCCGAGTGTGGCCCAATCACAGACTGGAGCGAAGGTCACTGAAACGATACTAGACCAGCGGGGCCCAGAGCGCTGCCGCTCACAGAATGCGGTGACGGCGCCACCTCGCGTCCCTTCCCTGACCTG-CCTCAGGCGGACGCAGTGACGCGTGTT-GCCTGGAGGCTGGAATACACCGGGGATCAAATGCAGAgaatggagaaaggagggaaggat-----ggggggacgtgttgaagaaaggaaggaagAGGGAGAAAAGGGGAGAGAAAAGGTGACGGCGAGAATAATATTTAAAATA-TGTGGTTTTATTATTTCTAACTTTTATTTTTGTCCTTTATCTAGTTCTGTTATTTATGAGCATTTTTACCATAG-CTATTTTTTCTCTGTGTGTGAATCTGTAAATATACAGCTCCTCATGCTTATTTCCGAGCCTGCGA---GATCAAGTTACAGACAACATGAGCTTCTACCTCCAGATGTGTCAGGGTGCATCTCTTGGGTACAAGAACAA------GGATTTTGTTTTG-TTTTACAAAATCAAAATACAAATCTCAAATAGGATAATAtttttaaaccgtcattggggcatactttgcatg-aataaatgtatctatttgaaatgtacagctcactgagttgtactctttgactgttttacacaacaacgtatctgctaccacaatgaagat----aaataacatttccatagtgccctaaagAACAGCCGTGTAGTAAAATTCCATGCAGTTGTTAAAAAGAGGAGGATGAATTTTTAAGTATTGTTATGAGAAGATCTGTGCCCAGCCTACTTTTACCCATTTTTAAAAGGACAA-GGATATATGGAATTATAA-----TGCCAGTAATACCACTTAGATAATGTATATTTTAAGTAGAAGAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     132686 1049 +   1495729 GATCCGAAAATGCTTCCTGCTGCTCCGCCACCCCTGGAAGGCAGCGCCCGCCTCTGGGCGGTTCTGATGGAAACGGGCTCCACCGCCCGCAGGAAAACCCACAACTAAGGGGCCAGGAAAAAGCCTCTCAGGGTCCCGCCACTTCAGTGAGGATCCTAATTTACACCCCGAGTGTGGCCCAATCACAGACTGGAGCGAAGGTCACTGAAACGATACTAGACCAGCGGGGCCCAGAGCGCTGCCGCTCACAGAATGCGGTGACAGCGCCACCTCGCGTCCCTTCCCTGACCTG-CCTCAGGCGGACGCAGTGACGCGTGTT-GCCTGGAGGCTGGAATACACCGGGGATCAAATGCAGAgaatggagaaaggagggaaggat-----ggggggacgtgttgaagaaaggaaggaagAGGGAGAAAAGGGGAGAGAAAAGGTGACGGCGAGAATAATATTTAAAATA-TGTGGTTTTATTATTTCTAACTTTTATTTTTGTCCTTTATCTAGTTCTGTTATTTATGAGCATttttaccatag-ctattttttctctgtgtgtgaatctgtaaatatacagctcctcatgcttatttccgagcctgcga---gatcaagttacagacaacatgagcttctacctccagatgtgtcagggtgcatctcttgggtacaagaacaA------GGATTTTGTTTTT-TTTTACAAAATCAAAATACAAATCTCAAATAGGATAATAtttttaaaccgtcattggggcatactttgcatg-aataaatgtatctatttgaaatgtacagctcactgagttgtactctttgactgttttacacaacaacgtatctgttaccacaatgaagat----aaataacatttccatagtgccctaaagAACAGCCGTGTAGTAAAATTCCATGCAGTTGTTAAAAAGAGGAGGATGAATTTTTAAGTATTGTTATGAGAAGATCTGTGCCCAGCCTACTTTTACCCATTTTTAAAAGGACAA-GGATATATGGAATTATAA-----TGCCAGTAATACCACTTAGATAATGTATATTTTAAGTAGAAGAAAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     238946 1064 -    863181 GATCCGAAAACGCTTCCTGCTGCTCCGTCTCCCCGGGAAGGCAGAGGCCGCCTCTGGGCCGTTCTGATGGAAAGGGGCTCAGCCGTCCGAAGGAAAACCCACAACTAACAGGCCAGGAAAAAGCCTCCCAGGGTCCCGCCCCTTCAGTGAGGATCCTAATTTACTTCCCGAGTGTGGCCCCATCAAAGACTGGAGCGAAGGACACTGAAATGATACAAGATCAGCGGGGCCCAGGGCGCTGCGGCTCACGGAATCCGGTGATAGAGCTGCCTCGTGTCCCTTCCCTGACCTG-CCCCAGGCGGACGCGGTGACGTGTGTTGGCCTCCAGGCTGGAATACA-TGGGGATCGAAAGCAGAGAACGGAGAAAGGAGGGAAGAATGCGGGGGGGGGACGCTTCGAAGAAAGGAAGGGAGGGGGAGAAAAGGGGAGAGAAAAGGTGAGGGTGAGAATAATATTTGAAAGA-TGTAGTTTTATTATTTCTAACTTTTAATTTTGCCCTTTATCTAGTTTTGTTATTTATGAACATTTTTACCATAG-CTTTTTTCTCTCTGTGTGTGAATCTGTAAATATATGGCTTATTATTCTTATTTCAGAGCCTTCGAGGTGGTCAAGCTGCAGAGAACATGAGCTTCTACCTCCAGATGTGCCAGGGTGTATCTCTTGGGTACAAAAACAA------GGGTTTTGTTTTG-TTTTACAAAGTCAGAGTACAAACCTCAAATAGGGTAATAtttttaaaccattattgggacatactttgcatacaataaatgtatgtatttgaaatgtgcagctcatggagttgtactgcttcgctgttttacacaaccacatatctgctaccacaatggagataaagaaataacatttccatagtcctctaaagaacagtcatgcGTTAACATTCCATGCAGTCCTTAAAAAGAGGAGGATGAATTTTTAAGTATTGTTATGAGAAGATCTATGCCCAGCCTACTTTTACCCATTTTTAAAAGGATAA-GGATGTATGGA--TGTAAGGATGTACCACTAATGCCACTTACATAATATATATTTTAAGTAG-GGAAAAC
i cerAty1.NW_012002535v1   M 2300 C 0
s chlSab2.chr17            29340172 1043 -  71996105 GATCCGAAAACGCTTCCTGCTGCTGCGTCACCCCTGGAAGGCAGCGTCCGCCTCTGGGCGGTTCTGATGGAAACGGGCTCCACCGCCCGCAGGAAAACCCACAACTAAGGGGCCAGGAAAAAGCCTCTCAGGGTCCCGCCCCTTCAGTGAGGATCGTAATTTACGCCCCGAGTGTGGCC----CAAAGACTGGAAAGAAGGTCACTGAAACGATACAAGATCAGCGGAGCCCAGAGCGTTGCCGCTCACAGAATCCGGAGACAGCGCCACCTCGCGTCCCTTCCCTGACCTG-CCCCAGGCGGACGCAGTGAGGCGTGTT-GCCTGGAGGCTGGAATACACCGGGGATCAAACGCAGAGAATGGAGAAAGGAGGGAAGGAT-----GGGGGAACGTGTTGAAGAAAGGAGGGGAGAGGGAGAAAAGGGGAGAGAAAAGGTGACAGCGAGGATAATATTTAAAATA-TGTGGTTTTATTATTT----CTTTTATTTTTGCCCTTTATCTAGTTTTGTTATTTATGAGCGTTTTTGCCATAG-CTATTTTTTCTCTGTGTGGGAATCTGTAAATATACAGCTCATTATGCTTATTTCAGAGCCTGCGA---GATCAAGTTACACACAACATGAGCTTCTACCTCCAGATGTGCCAGGGTGCATCTCTTAGGTACAAGAACAAGGGTTTGGGTTTGGTTTTG-TTTTACAAAATCAAAGTACAAATCTCAAATAGGATAATAtttttaaaccgtcattggggcatactttgcatgcaataaatgtatctatttgaaatgtacagctcattgagttttactctttggctgttttacacacccacgtatctgctactacaatgaagat----aaacaacatttccatagtgccctaaagAACAGCCATGTAATAAAATTCCATGCAGTTGTTAAAAAGAGGAGGATGAATTTTTAAGTATTGCTATGAGAAGATCTGTGCCCAGCCTACTTTTACCCATTTTTAAAAGGACAA-GGATATATGGAATTATAA-----TGCCAGTAATACCACTTAGATA----ATATTTTAAGTAG-GAAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      38205 1059 -    735854 GATCTGAAAACGCTTCCTGCTGCTCCGTCTCCCCGGGAAGGCAGAGACCGCCTCTGGGTCGTTCTGATGGAAAGGGGCTCAGCCGTCCGAAGGAAAACCCACAACTAACAGGCCAGGAAAAAGCCTCCCAGGGTCCCGCCCCTTCAGTGAGGATCCTAATTTACTCCCCGAGTGTGGCCCCATCAAAGACTGGAGCGAAGGTCACTGAAATGATACAAGATCGGCGGGGCCCAGAGCGCTGCGGCTCACGGAATCCGGTGATAGCGCTGCCTCGCGTCCCTTCCCTGACCTG-CCCCAGGCGGACGCGGTGACGTGTGTTGGCCTCCAGGCTGGAATACA-TGGGGATCGAAAGCAGAGAACGGAGAAAGGAGGGAAGAAT----GGGGGGGACGCTTCGAAGAAAGGAAGGGAGGGGGAGAAAAGGGGAGAGAAAAGGTGAAGCTGAGAATAATATTTGAAAGA-TGTAGTTTTATTATTTCTAACTTTTAATTTTGCCCTTTATCTAGTTTTGTTATTTATGAACATTTTTACCATAG-CTTTTTTCTCTCTGTGTGTGAATCTGTAAATATACGGCTTATTATTCTTATTTCAGAGCCTGCGAGGTGGTCAAGCTGCAGAGAACATGAGCTTCTACCTCCAGATGTGCCAGGGTGTATCTCTTGGGTACAAAAACAA------GGGTTTTGTTTTG-TTTTACAAAGTCAGAGTACAAACCTCAAATAGGGTAATATTCTTAAACCAttattgggacatactttgcatacaataaatgtatgtatttgaaatgtgcagctcatggagttgtactgcttcgctgttttacacaaccacatatctgctaccacaatgaagataaagaaataacatttccatagtcctctaaagGACAGCCATGCGTTAAAATTCCATGCAGTCCTTAAAAAGAGGATGATGAA-ATTTAAGTATTGTTATGAGAAGATCTGTGCCCAGCCTACTTTTACCCATTTTTAAAAGGATAA-GGATGTATGGA--TGTAAGGATGTACCACTAATGCCACTTACATAATATATATTTTAAGTAG-GGAAAAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      79243 1038 -   1829203 GATCCGAAAACGCTTCCTGCTGCTCCGCCACTCCTGGAAGGCAGCGTCCGCCTCTGGGCGGTTCTGATGGAAACGGGCTCTACCGCCCACAGGAAAACCCACAACTAAGGGGCCAGGAAAAAGCCTCTCAGGGTCCCGCCCCTTCAGTGAGGATCCAAATTTACACCCGGAGTGTGGCGCCGTCAAAGACTGGAGTGACCTTCACTG-AATGATACAAGACCAGCGAGGCCCAGAGCGCTGCCGCTCACAGAATGCGGTGACGGCGCCACCTCGTGTCCCTTCCCTGACCTGCCCCCAGGTGGTCGCAGTGACGCGTGTTGGCCTGGAGGCTGGAATACACAGGGGATCAAATGCAGAgaatggagaaaggagggaaggat-----ggggggacgtgttgaagaaaggaa------gggaaaaaaggGGAGAGAAAAGGTGCCGGCGAGAATAATATTCAAAATA-TATGATTTTATTATTTCTAACTTTAAATTTTGCCCTGTAACTAGTTTTGTTATTTTTGAGTATTTTTACCATAGTTTTTTTTTTCTCTGTGTGTGAATCTGTAAGTATACAGCTTATTATGCTAATTTCAGAGCCTGTGA---GATCAAGTTACACACAACATGAGCTTCTACCTCCAGATGTGCCAGGGTGTATCTCTTGGGTACAAGAACAA------GGGTTTGGTTTTG-TTTCACAAAATCAAAGTACAAATCTCAAACAGGATAATAtttttaaaccgtcattggggtatactttgcatgcaataaatgtatctatttgaaatgtacagctcattgagttgtactcttaggctgttttacacacccacatatctgctactacaatgaagat----aaataacatttccatAGTGTCCTAAAGAacagccatgtaataaaattccatgcagttgttaaaaagaggaggatgaatttttaagtattgctatgagaagatctGTGCCCAGCCTACTTTTACCCATTTTTAAAAGGACAA-GGATATATA----TATAA-----TGCCAGTAATACCACTTAGATA----ATATTTTAAGTAGGAGAAAAC
i colAng1.NW_012115577v1   C 0 M 4785
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      16854 24969 -    383796 I
e cebCap1.NW_016107755v1     526502 23853 -   1771730 I

a score=54929.000000
s hg38.chr6_GL000254v2_alt  1322173 17 +   4827813 ATGGAGGATTATTCCCC
s panTro5.chr6             30193068 17 + 175400573 ATGGAGGATTATTCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30422968 17 + 173848474 ACGGAGGATTATTCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      77818 17 +   2037526 ATGGAGGATTATTCCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74768655 17 + 122973662 CCGGAGGATTACTCGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30582532 17 + 172585720 CCGGAGGATTACTCACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29950847 17 - 170955103 CTTGAAGATTACTGACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     133735 17 +   1495729 CTTGAAGATTACTCACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     240010 17 -    863181 CCGGAGGATTACTCACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29341215 17 -  71996105 CCTTAAAATTACTCACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      39264 17 -    735854 TCGGAGGATTACTCACC
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      16854 24969 -    383796 I
e cebCap1.NW_016107755v1     526502 23853 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M

a score=459895.000000
s hg38.chr6_GL000254v2_alt  1322190 81 +   4827813 AAAATTTTGACAGGGACCCCAGGGACTGGGATAACGTTGTGACTTTCACCTTCTCTGAAATGTTGGAATTTTATATTACAG
s panTro5.chr6             30193085 81 + 175400573 AAAATTTTGACAGGGACCCCAGGGACTGGGATAACGTTGTGACTTTCACCTTCTCTGAAATGTTGGAATTTTATATTACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30422985 81 + 173848474 AAAATTTTGACAGGGACCCCAGGGACTGGGATAACATTGTGACTTTCACCTTCTCTGAAATGTTGGAATTTTATATTACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      77835 81 +   2037526 AAAATTTTGACAGGGACCCCAGGGACTGGGATAACGTTGTGACTTTCACCTTCTCTGAAATGTTGGAATTTTATATTACAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74768672 81 + 122973662 AAAATTTTGACAGGGACCCCAGGGACTGGGATAACGTTGTGACTTTCACTTTCGTTAAAATGTTGGAATTTTACATTACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30582549 81 + 172585720 AAAATTTTGGCAGGGACCCTAGGGACTGTGGTAACGTTGTGACTTTTGCTTTCTCTGAAATGTTGGAATTTTATATTACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29950864 72 - 170955103 AAAATTTTGAC---------AGGGACTGGGATAACTTTGTGACTTTCAGTTTCTCTGAAACGTTGGAATTTTTTATTATAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     133752 72 +   1495729 AAAATTTTGAC---------AGGGACTGGAATAACTTTGTGACTTTCAGTTTCTCTGAAACGTTGGAATTTTTTATTATAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     240027 81 -    863181 AAAATTTTGGCAGGGACCCCAGGGACTGTGGTAACGTTGTGACTTTCGCTTTCTCTGAAATGTTGGAATTTTATATTACAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29341232 72 -  71996105 AAAATTTTGAC---------AGGGACTGGGATAACTTTGTGACTTTCAGTTTCTCTGAAAGGTTGGAATTTTTTATTACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      39281 81 -    735854 AAAATTTTGGCAGGGACCCTAGGGACTGTGGTAACGTTGTGACTTTCGCTTTCTCTGAAATGTTGGAATTTTATATTACAG
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     550355 81 -   1771730 AAAGTTTTGACAGTGACTCCAGGGACTGAAATAACTTTGTAACTTTCACTTTCTCTGAAATGTTGGAATTCTATATTAcag
i cebCap1.NW_016107755v1   I 23853 I 22
s aotNan1.NW_018496904v1      41823 81 -    383796 AAAGTTTTGACAGTGGCTCCAGGGACTGAAATAACTTTGTAACTTTCCCTTTCTCTGAAATGTTGGAATTCTATGTTACAG
i aotNan1.NW_018496904v1   I 24969 I 19
e mm10.chr17               58009284 6253 -  94987271 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M

a score=133483.000000
s hg38.chr6_GL000254v2_alt  1322271 34 +   4827813 AATAAACTTGGATTTTGgccaggcgcggtggctc
s panTro5.chr6             30193166 34 + 175400573 AATAAACTTGGATTTTGgccaggcgcggcggctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30423066 34 + 173848474 AATAAACTTGGATTTTGgccaggcgcggtggctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      77916 34 +   2037526 AATAAACTTGGATTTTGgccaggcgcggtggctc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74768753 34 + 122973662 TATAAACTTGGATTTTGGCCAGGGACGGTGGCTC
i nomLeu3.chr1a            C 0 I 19768
s rheMac8.chr4             30582630 34 + 172585720 TATAAACTCGGATTTTGgtcaggcacgatggctc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29950936 34 - 170955103 TTTAAAATTTTATTTTAgccaggcacgatggctc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     133824 34 +   1495729 TTTAAAATTTTATTTTAgccaggcacgatggctc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     240108 34 -    863181 TATAAACTCGGATTTTGgtcaggtacaatggctc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29341304 34 -  71996105 TATAAACTTGGATTTTAgccaggcacaatggctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      39362 34 -    735854 TATAAACTCGGATTTTGgtcaggcacgatggctc
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      41904 19 -    383796 I
e cebCap1.NW_016107755v1     550436 22 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M

a score=135207.000000
s hg38.chr6_GL000254v2_alt  1322305 32 +   4827813 aggcctgtaatcccagctctggaagctgaagg
s panTro5.chr6             30193200 32 + 175400573 aggcctgtaatcccagctctggaagctgaagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30423100 32 + 173848474 aggcctgtaatcccagctctggaagctgaagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      77950 32 +   2037526 aggcctctaatcccagctctggaagctgaagg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30582664 32 + 172585720 aggcctgtaatcccagctctggaagctgaagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29950970 32 - 170955103 aggcctgtaatcccagctctggaagctgaagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     133858 32 +   1495729 aggcctgtaatcccagctctggaagctgaagg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     240142 32 -    863181 aggcctgtaatcccagctctggaagctgaagg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29341338 32 -  71996105 aggcctgtaatcccagctctggaagctgaagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      39396 32 -    735854 aggcctgtaatcccagccctggaagctgaagg
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      41904 19 -    383796 I
e cebCap1.NW_016107755v1     550436 22 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e nomLeu3.chr1a            74768787 19768 + 122973662 I

a score=15015.000000
s hg38.chr6_GL000254v2_alt  1322337 3 +   4827813 ata
s panTro5.chr6             30193232 3 + 175400573 ata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30423132 3 + 173848474 ata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      77982 3 +   2037526 ata
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30582696 3 + 172585720 ata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29951002 3 - 170955103 ata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     133890 3 +   1495729 ata
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     240174 3 -    863181 ata
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29341370 3 -  71996105 ata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      39428 3 -    735854 ata
i manLeu1.NW_012107142v1   C 0 C 0
s aotNan1.NW_018496904v1      41923 3 -    383796 ata
i aotNan1.NW_018496904v1   I 19 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     550436 22 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e nomLeu3.chr1a            74768787 19768 + 122973662 I

a score=1623220.000000
s hg38.chr6_GL000254v2_alt  1322340 338 +   4827813 gcttgagcccaggagttcgaggctgcagtgagctatgatctcaccactacactccagcctgggtgacagcaagagatcttgtctca------gaaataaat--------------aaataaaaTT------TAAAAATAAAAATAATAAACTTGGATTTGTGTGGTGGTTAAGAAAAAATATTTGTTTG-AAAATATTATAAAGATAAGCCA-CACACCCAAATAGTTACAGGATTTTAAAAACCAAAGTGTTAATTAAAACCCAACTCCAGAAACTCTCTTTTAAGGGGG--CTTCATATTTTCATGTCATTAAATCTTTCTCAAAGTATCTTTGATAGAGCCG-TTTTTAGTGCAGTAGAGAGATGT
s panTro5.chr6             30193235 338 + 175400573 gcttgagcccaggagttcgaggctgcagtgagctatgatctcaccactacactccagcctgggtgacagcaagagatcttgtctca------gaaataaat--------------aaataaaaTT------TAAAAATAAAAATAATAAACTTGGATTTGTGTGGTGGTTAAGAAAAAATATTTGTTTG-AAAATATTATAAAGATAAGCCA-CACACCCAAATAGTTACAGGATTTTAAAAACCAAAGTGTTAATTAAAACCCAACTCCAGAAACTCTCTTTTAAGGGGA--CTTCATATTTTCATGTCATTAAATCTTTCTCAAAGTATCTTTGATAGAGCCG-TTTTTAGTGCAGTAGAGAGATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30423135 338 + 173848474 gcttgagcccaggagttcgaggctgcagtgagctatgatctcaccactacactccagcctgggtgacagcaagagatcttgtctca------gaaataaat--------------aaataaaaTT------TAAAAATAAAAATAATAAACTTGGATTTGTGTGGTGGTTAAGAAAAAATATTTGTTTG-AAAATATTATAAAGATAAGCCA-CACACCCAAATAGTTACAGGATTTTAAAAACCAAAGTGTTAATTAAAACCCAACTCCAGAAACTCTCTTTTAAGGGGA--CTTCATATTTTCATGTCATTAAATCTTTCTCAAAGTATCTTTGATAGAGCCG-TTTTTAGTGCAGTAGAGAGATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      77985 339 +   2037526 gcttgagcccaggagttcgaggctgcagtgagctatgatctcaccactacactccagcctgggtgacagcaagagatcttgtctca------gaaataaat--------------aaataaaaTT------TAAAAATAAAAATAATAAACTTGGATTTGTGTGGTGGTTAAGAAAAAATATTTGTTTG-AAAATATTATAAAGATAAGCCA-CACACCCAAATAGTTACAGGATTTTAAAAACCAAAGTGTTAATTAAAACCCAACTCCAGAAACTCTCTTTTAAGGGGG--CTTCATATTTTCATGTCATTAAATCTTTCTCAAAGTATCTTTGATAGAGCCGTTTTTTAGTGCAGTAGAGAGATGT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30582699 336 + 172585720 gcttgagcccaggagttcgagactgcagtgagctaggatctgaccactacactccagcctgggtgacagaaagag-acttgtctca------aaaataaat--------------aaagaaaaTT------TAAAAATAAAAATAATAAACTTGGCTTTGTATGGTGGTTAAGAAA-AATATTTGTTTG-AAAATATTATGAATGTAAGCTG-CACACCCAAATAGTTACAGGATTTTAAAAACCGAAGTGTTAATTAAAACCCAACTCCAGAAACTCACTTTTAAGGGGA--CTTCATATTTTCAGGTCATTAAATCTTTCTCAAAGTGTCTTTGATAGAGCTG-TTTTTAGTGCAGTAGGGAGATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29951005 329 - 170955103 gcttgagcccaggagttcgaggctgcagtgagctatgatctcaccactacactccagcctgggtgacagaaagagaacttgtctca------aaaataaat--------------aaataaaaTT------AAAAAATAAAAATAACAAACTTGGATTTGTTTGGTGGTTAAGAAAGAATATTTGTTTG-AAAATGTTAGGAAGGTAA----------CCAAATACTTACAGGATTTTAAAAACCAAAGTGTTAATTAAAACCCAAATCCAGAAACTCTCTTTTAAGAGGA--CTTCATATTTTCATGGCATTGATTCCTTCTCAAAGTGCCTTTGATAGAGCTG-TTCTTAGTGCAGTAGGGAGATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     133893 329 +   1495729 gcttgagcccaggagttcgaggctgcagtgagctatgatctcaccactacactccagcctgggtgacagaaagagaacttgtctca------aaaataaat--------------aaataaaaTT------TAAAAATAAAAATAACAAACTTGGATTTGTTTGGTGGTTAAGAAAGAATATTTGTTTG-AAAATGTTAGGAAGGTAA----------CCAAATACTTACAGGATTTTAAAAACCAAAGTGTTAATTAAAACCCAAATCCAGAAACTCTCTTTTAAGAGGA--CTTCATATTTTCATGGCATTGATTCCTTCTCAAAGTGCCTTTGATAGAGCTG-TTCTTAGTGCAGTAGGGAGATGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     240177 336 -    863181 gcttgagcccaggagttcgaaactgcggtgagctaggatctgaccactacactccagcctgggtgacagaaagag-acttgtctca------aaaataaat--------------aaagaaaaTT------TAAAAATAAAAATAATAAACTTGGATTTGTATGATAGTTAAGAAA-AATATTTGTTTG-AAAATATTATGAATGTAAGCTG-CACACCCAAACAGTTACAGAATTTTAAAAACCGAAGTGTTAATTAAAACCCAACTCCAGAAACTCACTTTTAAGGGGA--CTTCGTATTTTCATGTCATTAACTCTTTCTCAAAGTGTCTTTGATAGAGCTG-TTTTTAGTGCAGTAGGGAGATAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29341373 330 -  71996105 gcctgagcccaggagttcgaggctgcagtgagctatgatctcaccactacactccagcctggatgacagaaagagaacttgtctca------aaaataaat--------------aaaTAACATT------TAAAAATAAAAATAACAAACTTGGATTTGTATGGTGGTTAAGAAAGAATATTTGTTTGAAAAATGTTATGAAGGTAA----------CCAAATATTTACAGGATTTTAAAAATCTAAGTGTTAATTAAAACTCAACTCCAGAAACTCTCTTTTAAGAGGA--CTTCGTATTTTCATGGCATTGATTCCTTCTCAAAGTGCCTTTGATAGAGCTG-TTCTTAGTGCAGTAGGGAGATGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      39431 332 -    735854 gcttgagcccaggagttcaagactgcagtgagctaggatctcaccactacactccagcctgggtgacagaaagag-acttgtctca------aaaataaag--------------aaa----att------taaaaaTAAAAATAATAAACTTGGCTTTGTATGGTGGTTAAGAAA-AATATTTGTTTG-AAAATATTATGAATGTAAGCTG-CACACCCAAATAGTTACAGGATTTTAAAAACCGAAGTGTTAATTAAAACCCAACTCCACAAACTCACTTTTAAGGGGA--CTTCATATTTTCAGGTCATTAAATCTTTCTCAAAGTGTCTTTGATAGAGTTG-TTTTTAGTGCAGTAGGGAGATGT
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     550458 358 -   1771730 gcttgagcccaggagtttgaggctgcagtgagctaagatggtgctactgcactccagcctgggtgacagaaagagaccttgtctcaaaaagtaaaataaataatcataaaaaat-aaaTTAAATT------TAAAAATAAAAATAAATAACATGGATTTGTATGGAGGTTAAAACAGGACATTTGTTTG--AAACATTATGAAGCTAAGCCT-CAAACCCAACTAGTTACAGATATTTAAAAACCAAAGTGTTAATTAAAACCCAACACCAGGAACACACTTTTAAGAGGATCCTTCATATTTTCATGGCATTAATCCTTTCTTAAAGTGCCCTTGATAGAAATG-CTTTTAGTGTAGTAGAGAGATGC
i cebCap1.NW_016107755v1   I 22 C 0
s aotNan1.NW_018496904v1      41926 365 -    383796 gcttgagcccaggagttcgaggctgcagtgagctaagatggtgctactgcactccagcctgggtgacagaaagagaccttgtctcaaaaaagaaaataaatattcataaaaaataaaaTTAAATTAAAAAATAAAAATAAAAATAATAAACATGGATTTGTATGGAGGTTAAAA-AGGATATTTATTTG--AAATATTATGAAGCTAAGCCTACAAACCGAACTAGTTACAGATATTTAAAATCCAAAGTGTTAATTAAAGCTCAACACCGGAAACACACTTTTAAGAGGATCCTTCATATTTTCCTGGCCTGGACACTTTCATAAAGTGCCCTTGATAGAAATG-TTTTTAGTGGAGTGGAGAGATGC
i aotNan1.NW_018496904v1   C 0 I 8
e mm10.chr17               58009284 6253 -  94987271 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e nomLeu3.chr1a            74768787 19768 + 122973662 I

a score=31464.000000
s hg38.chr6_GL000254v2_alt  1322678 8 +   4827813 GTAACAAT
s panTro5.chr6             30193573 8 + 175400573 GTAACAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30423473 8 + 173848474 GTAACAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      78324 8 +   2037526 GTAACAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30583035 8 + 172585720 GTAACCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29951334 8 - 170955103 GTAACAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     134222 8 +   1495729 GTAACAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     240513 8 -    863181 GTAATGAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29341703 8 -  71996105 GTAACAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      39763 8 -    735854 GTAACCAT
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     550816 7 -   1771730 -TAATAAC
i cebCap1.NW_016107755v1   C 0 I 1
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      42291 8 -    383796 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e nomLeu3.chr1a            74768787 19768 + 122973662 I

a score=78540.000000
s hg38.chr6_GL000254v2_alt  1322686 14 +   4827813 TTTACAAAAGGGGC
s panTro5.chr6             30193581 14 + 175400573 TTTACAAAAGGGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30423481 14 + 173848474 TTTACAAAAGGGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      78332 14 +   2037526 TTTACAAAAGGGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30583043 14 + 172585720 TTTACAAAAGGGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29951342 14 - 170955103 TTCACAAAAGGGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     134230 14 +   1495729 TTCACAAAAGGGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     240521 14 -    863181 TTTACAAAAGGGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29341711 14 -  71996105 TTTACAAAAGGGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      39771 14 -    735854 TTTACAAAAGGGGC
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     550824 14 -   1771730 TTTACAAAAGAGGC
i cebCap1.NW_016107755v1   I 1 I 28
s aotNan1.NW_018496904v1      42299 14 -    383796 TTTACAAAAAGTGC
i aotNan1.NW_018496904v1   I 8 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e nomLeu3.chr1a            74768787 19768 + 122973662 I

a score=143775.000000
s hg38.chr6_GL000254v2_alt  1322700 34 +   4827813 GGGCTGTAATAAAAAGGGAAAGGCAAAATCCAGT
s panTro5.chr6             30193595 34 + 175400573 GGGCTGTAATAAAAAGGGAAAGGCAAAATCCAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30423495 34 + 173848474 GGGCTGTAATAAAAAGGGAAAGGCAAAATCCAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      78346 34 +   2037526 GGGCTGTAATAAAAAGGGAAAGGCAAAATCCATT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30583057 34 + 172585720 AGGCTGTAATAAAAAGGGAAACGCAAAATCCAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29951356 34 - 170955103 GGGCTGTAATAAAAAGGAAAACGCAAAATCCAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     134244 34 +   1495729 GGGCTGTAATAAAAAGGAAAACGCAAAATCCAGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     240535 34 -    863181 GGGCTGTAATAAAAAAGGAAACGCAAAATCCAGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29341725 34 -  71996105 GGGCTATAATAAAAAGGGAAACGCAAAATCCAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      39785 34 -    735854 AGGCTGTAATAAAAAGGGAAACGCAAAATCCAGT
i manLeu1.NW_012107142v1   C 0 C 0
s aotNan1.NW_018496904v1      42313 29 -    383796 ----TACAATAAAAAGAAAAATGCAAAATCGAG-
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     550838 28 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e nomLeu3.chr1a            74768787 19768 + 122973662 I

a score=36346.000000
s hg38.chr6_GL000254v2_alt  1322734 11 +   4827813 GT-GGACAC----ACT
s panTro5.chr6             30193629 11 + 175400573 GT-GGACAC----ACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30423529 11 + 173848474 GT-GGACAC----ACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      78380 12 +   2037526 GTGGGACAC----ACT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30583091 15 + 172585720 GG-GGACACGCTGACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29951390 11 - 170955103 GG-GGACAC----ATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     134278 11 +   1495729 GG-GGACAC----ATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     240569 15 -    863181 GG-GGACACGCTGACT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29341759 11 -  71996105 GG-GGACAC----ACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      39819 15 -    735854 GG-GGACACGCTGACT
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     550866 11 -   1771730 GT-GGACAC----ACT
i cebCap1.NW_016107755v1   I 28 C 0
s aotNan1.NW_018496904v1      42342 11 -    383796 GC-AGACAC----TCT
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e nomLeu3.chr1a            74768787 19768 + 122973662 I

a score=758423.000000
s hg38.chr6_GL000254v2_alt  1322745 119 +   4827813 GTCCCATTTATTTTCAAAGCACGTTTGAAAACTGCGCTGCTATAGCGTCTTTGGGTTGAGACAAAGTCGAGGAAAATCTTGTTCCTGGAGTACTGATTTCCTTTTTCCCAGGGCCAAAG
s panTro5.chr6             30193640 119 + 175400573 GTCCCATTTATTTTCAAAGCACGTTTGAAAACTGCGCTGCTATAGCGTCTTTGGGTTGAGACAAAGTCGAGGAAAATCTTGTTCCTGGAGTACTGATTTCCTTTTTCCAAGGGCCAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30423540 119 + 173848474 GTCCCATTTATTTTCAAAGCACGTTTGAAAACTGCGCTGCTATAGCGTCTTTGGGTTGAGACAAAGTCGAGGAAAATCTTGTTCCTGGAGTACTGATTTCCTTTTTCCAAGGGCCAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      78392 119 +   2037526 GTCCCATTTATTTTCAAAGCACGTTTGAAAACTGCGCTGCTATAGCGTCTTTGGGTTGAGACAAAGTCGAGGAAAATCTTGTTCCTGGAGTACTGATTTCCTTTTTCCAAGGGCCAAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74788555 119 + 122973662 GTCCCATTTATTTTCAAAGCGCGTTTGAAAACTGCCGTGCTATAGTGTCTTTGGGTTGAGACAAAGTCGAGGAAAATCTTGTTCCTGGAGTATCGATTTCCTTATTCCAAGGGCCAAAG
i nomLeu3.chr1a            I 19768 C 0
s rheMac8.chr4             30583106 119 + 172585720 GTCCCATTTATTTTCAAAGCACGTTTGAAAACTGCACTGCTATAGTGTCTTTGAGTTGAGACAAAGTCGAGGAAAATCTTGTTCCTGGAGTGTTGATTTCCTTTTTCCAAGGGCCAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29951401 118 - 170955103 GTCCCATTTATTTTCAAAGCACGTTTGAAAACTGCGCTGCTATAGTGTCTTTGACTTAAGACAAAGTCGAGGAAAATCTTG-TCCTGGAGTATTGATTTCCGTTTTCCAAGGGCCAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     134289 118 +   1495729 GTCCCATTTATTTTCAAAGCACGTTTGAAAACTGCGCTGCTATAGTGTCTTTGAGTTAAGACAAAGTCGAGGAAAATCTTG-TCCTGGAGTATTGATTTCCGTTTTCCAAGGGCCAAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     240584 119 -    863181 GTCCCATTTATTTTCAAAGCACATTTGAAAACTGCACTGCTATAGTGTCTTTGGGTTGAGACAAAGTCGAGGAAAATCTTGTTCCTGGAGTGTTGATTTCCTTTTTCCAAGGGCCAAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29341770 119 -  71996105 GTCCCATTTATTTTCAAAGCACGTTTGAAAACATCACTGCTATAGTGTCTTTGGGTTGAGACAAAGTCGAGGAAAATCTTGTTCCTGGAGTGCTGATTTCCTTTTTCCAAGGGCCAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      39834 119 -    735854 GTCCCATTTATTTTCAAAGCACGTTTGAAAACTGCACTGCTATAGTGTCTTTGGGTTGAGACAAAGTCGAGGAAAATCTTGTTCCTGGAGTGTTGATTTCCTTTTTCCAAGGGCCAAAG
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     550877 119 -   1771730 GTCCCATTTACACTCAAAGCACCTTTGAAAACTGCACTGCCATGGTATCTTTGAGTTGAGATGACGTCGAGGCAAATATTCTTCCTGGAGTATTGGTTTCCCCTTTCCAATGGCCAAAG
i cebCap1.NW_016107755v1   C 0 I 114
s aotNan1.NW_018496904v1      42353 119 -    383796 GTCCCATTTACACTCCAGGCAGCTTTGAAAACTGCGCTGCCATAGTGTCTTTGGGTTGAGACAAAGTCGAGGCAAATTTTGTTCCTGGAGTATTGGTTTCCCCTTTCCAATGGCCAAAG
i aotNan1.NW_018496904v1   C 0 I 105
e mm10.chr17               58009284 6253 -  94987271 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M

a score=239067.000000
s hg38.chr6_GL000254v2_alt  1322864 59 +   4827813 TCTAAAACTCAGAAGCAAGTCTAAAAACTCAGGCTGACTTTCAGATCTGAAGAAATCTC
s panTro5.chr6             30193759 54 + 175400573 TCT-----TTCGAAGCAAGTCTAAAAACTCAGGCTGACTTTCGGATCTGAAGAAATCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30423659 54 + 173848474 TCT-----TTCGAAGCAAGTCTAAAAACTCAGGCTGACTTTCGGATCTGAAGAAATCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      78511 54 +   2037526 TCT-----TTCGAAGCAAGTCTAAAAACTCAGGCTGACTTTCGGATCTGAAGAAATCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74788674 54 + 122973662 TCT-----TTCGAAGCAAGTCTAAAAACTCAGGCTGACTTAACGATCTGAAGAAATATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30583225 54 + 172585720 CCT-----TTCGAAGCAAGTCTAAAACCTCAGGCTGACTTTCAGATCTGAAGAAATCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29951519 54 - 170955103 TCT-----TTCAAAGCAAGTCTAAAAACTCAGGCTGACTTCCGGATCTAAAGAAGTCTC
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     134407 54 +   1495729 TCT-----TTCGAAGCAAGTCTAAAAACTCAGGCTGACTTCCGGATCTAGAGAAGTCTC
i macNem1.NW_012012100v1   C 0 I 2
s cerAty1.NW_012002535v1     240703 54 -    863181 CCT-----TTCGAAGAAAGTCTAAAAACTCAGGCTGGCTTTCGGATCTGAAGAAATCTC
i cerAty1.NW_012002535v1   C 0 I 2
s chlSab2.chr17            29341889 54 -  71996105 CCT-----TTCGAAGCAAGTCTAAAACCTCAGGCTGACTTCCGGATCTAGAGAAGTCTC
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1      39953 54 -    735854 CCT-----TTCGAAGCAAGTCTAAAAACTCAGGCTGACTTTCGGATCTGAAGAAATCTC
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      42472 105 -    383796 I
e cebCap1.NW_016107755v1     550996 114 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M

a score=910.000000
s hg38.chr6_GL000254v2_alt  1322923 1 +   4827813 A
s panTro5.chr6             30193813 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30423713 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      78565 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74788728 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      42472 105 -    383796 I
e cebCap1.NW_016107755v1     550996 114 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e manLeu1.NW_012107142v1      40007 0 -    735854 C
e chlSab2.chr17            29341943 1 -  71996105 I
e cerAty1.NW_012002535v1     240757 2 -    863181 I
e macNem1.NW_012012100v1     134461 2 +   1495729 I
e macFas5.chr4             29951573 1 - 170955103 I
e rheMac8.chr4             30583279 0 + 172585720 C

a score=1365.000000
s hg38.chr6_GL000254v2_alt  1322924 1 +   4827813 A
s panTro5.chr6             30193814 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30423714 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      78566 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74788729 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            29341944 1 -  71996105 A
i chlSab2.chr17            I 1 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      42472 105 -    383796 I
e cebCap1.NW_016107755v1     550996 114 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e manLeu1.NW_012107142v1      40007 0 -    735854 C
e cerAty1.NW_012002535v1     240757 2 -    863181 I
e macNem1.NW_012012100v1     134461 2 +   1495729 I
e macFas5.chr4             29951573 1 - 170955103 I
e rheMac8.chr4             30583279 0 + 172585720 C

a score=5922.000000
s hg38.chr6_GL000254v2_alt  1322925 3 +   4827813 GAA
s panTro5.chr6             30193815 3 + 175400573 GAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30423715 3 + 173848474 GAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      78567 3 +   2037526 GAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74788730 3 + 122973662 GAA
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1     134463 3 +   1495729 GAA
i macNem1.NW_012012100v1   I 2 C 0
s chlSab2.chr17            29341945 3 -  71996105 GAA
i chlSab2.chr17            C 0 I 49
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      42472 105 -    383796 I
e cebCap1.NW_016107755v1     550996 114 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e manLeu1.NW_012107142v1      40007 0 -    735854 C
e cerAty1.NW_012002535v1     240757 2 -    863181 I
e macFas5.chr4             29951573 1 - 170955103 I
e rheMac8.chr4             30583279 0 + 172585720 C

a score=6972.000000
s hg38.chr6_GL000254v2_alt  1322928 8 +   4827813 TATTTGTG
s panTro5.chr6             30193818 8 + 175400573 TATTTGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30423718 8 + 173848474 TATTTGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      78570 8 +   2037526 TATTTGTG
i gorGor5.CYUI01015528v1   C 0 C 0
s macNem1.NW_012012100v1     134466 8 +   1495729 TGTTTGTG
i macNem1.NW_012012100v1   C 0 I 40
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      42472 105 -    383796 I
e cebCap1.NW_016107755v1     550996 114 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e manLeu1.NW_012107142v1      40007 0 -    735854 C
e chlSab2.chr17            29341948 49 -  71996105 I
e cerAty1.NW_012002535v1     240757 2 -    863181 I
e macFas5.chr4             29951573 1 - 170955103 I
e rheMac8.chr4             30583279 0 + 172585720 C
e nomLeu3.chr1a            74788733 0 + 122973662 C

a score=380456.000000
s hg38.chr6_GL000254v2_alt  1322936 709 +   4827813 tggaagaacattccatgctaatgggtaggaagaatcaatatcgtgaaaatggccatactgcccaagctaatttatagattcaatgccatccccatcaagctaccaatgactttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcctgcatcaccaagtcaatcctaagccaaaagaacaaagctggaggcatcacattacctgacttcaaactatactacaaggctacaataaccaaaagagcatggtactggtaccaaaacagagatatagatcagtggaacagaacagagccctcagaaataacaccacatatctacaactatctgatctttgacaaacctgagaaaaacaagcaatggggaaaggattccctatttaataaatggtgctgggaaaactggctatccctatgtagaaagctgaaactggatcccttccttacatgttatacaaaaattaattcaagatggattaaagacttaaacgtcagacctaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagggtgaacaggcaacctacaa
s panTro5.chr6             30193826 708 + 175400573 tggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaaatggccatactgcccaagctaatttatagattcaatgccatccccatcaagctaccaatgactttcttcacagaaatggaaaaaaatactttaaagttcatatggaaccaaaacagagcctgcatcaccaagtcaatcctaagccaaaagaacaaagctggaggcatcacgttacctgacttcaaactatactacaaggccacaataaccaaaacaacatggtactggtaccaaaacagagatatagatcaatggaacagaacagagccctcagaaataacaccacatatctacaactatctgatctttgacaaacctgagaaaaacaagcaatggggaaaggatttcctatttaataaatggtgctgggaaaactggctagccatgtgtagaaagctgaaactggatctcttccttacaccttatacaaaaattaattcaagatggattaaagacttaaacgtcagacctaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaatttgacaaatgg-atctaattaaactcaagcgcttctgcacagcaaaagaaaataccatcagagtgaacaggcaacctacaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30423726 709 + 173848474 tggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaaatggccatactgcccaagctaatttatagattcaatgccatccccatcaagctaccaatgactttcttcacagaaatggaaaaaaatactttaaagttcatatggaaccaaaacagagcctgcatcaccaagtcaatcctaagccaaaagaacaaagctggaggcatcacgttacctgacttcaaactatactacaaggccacaataaccaaaacaacatggtactggtaccaaaacagagatatagatcaatggaacagaacagagccctcagaaataacaccgcatatctacaactatctgatctttgacaaacctgagaaaaacaagcaatggggaaaggatttcctatttaataaatggtgctgggaaaactggctaaccatatgtagaaagctgaaactggatcccttccttacaccttatacaaaaattaattcaagatggattaaagacttaaacgtcagacctaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaaagcaaaattgacaaatgggatctaattaaactatggagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacaa
i panPan2.chr6             C 0 I 3
s gorGor5.CYUI01015528v1      78578 709 +   2037526 tggaagaacattccatgctcatgggtaggaagaatcaatatcatgaaaatggccatactgcccaagctaatttatagattcaatgccatctccatcaagctaccaatgactttcttcacagaattggaaaaaactactttaaagttcatgtggaaccaaaaaagagcaggcatcgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacgttacctgacttcaaactatactacaaggctacaataaccaaaacagcatggtactggtaccaaaacagagatatagatcagtggaacagaacagagccctcagaaataacaccgcatatctacaactatctgatctttgacaaacctgagaaaaacaagcaatggggaaaggattccctatttaataaatggtgctgggaaaactggctatccctatgtagaaagctgaaactggatcccttccttacatgttatacaaaaattaattcaagatggattaaagacttaaacgtcagacctaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaagtacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaaataccatcagggtgaacaggcaacttacaa
i gorGor5.CYUI01015528v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      42472 105 -    383796 I
e cebCap1.NW_016107755v1     550996 114 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e manLeu1.NW_012107142v1      40007   0 -    735854 C
e chlSab2.chr17            29341948  49 -  71996105 I
e cerAty1.NW_012002535v1     240757   2 -    863181 I
e macNem1.NW_012012100v1     134474  40 +   1495729 I
e macFas5.chr4             29951573   1 - 170955103 I
e rheMac8.chr4             30583279   0 + 172585720 C
e nomLeu3.chr1a            74788733   0 + 122973662 C

a score=3119.000000
s hg38.chr6_GL000254v2_alt  1323645 14 +   4827813 catgggagaaaatt
s panTro5.chr6             30194534 14 + 175400573 aatgggagacaatt
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      79287 14 +   2037526 catgggagaaaatt
i gorGor5.CYUI01015528v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      42472 105 -    383796 I
e cebCap1.NW_016107755v1     550996 114 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e manLeu1.NW_012107142v1      40007  0 -    735854 C
e chlSab2.chr17            29341948 49 -  71996105 I
e cerAty1.NW_012002535v1     240757  2 -    863181 I
e macNem1.NW_012012100v1     134474 40 +   1495729 I
e macFas5.chr4             29951573  1 - 170955103 I
e rheMac8.chr4             30583279  0 + 172585720 C
e nomLeu3.chr1a            74788733  0 + 122973662 C
e panPan2.chr6             30424435  3 + 173848474 I

a score=508724.000000
s hg38.chr6_GL000254v2_alt  1323659 959 +   4827813 tttgcaatctactcatctgacaaagggctaatatccagaatctacaatgaactccaacaaatgtacaagaaaaaaacaaacaaccccatcaaaaagtgggcaaaggatatgaacagacgcttctcaaaagaagacatttatgcagccaaaagacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagctcaacccttgtggaagtcaatgtggcgattcctcagggatctaggactagaaataccatttgacccagccatcccattactgggtatatacccaaaggactataaatcatgctgctataaagacacatgcacacgtatgtttattgcggcactattcacaatagcaaagacttgaaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcacgtcctttgtaggaacatggatgaaattggaaatcatcattctcagtaaactatcgcaaggacaaaaaaccaaacaccacatgttctcactcatagatgggaactgaacaatgagaacacatggacacaggaaggggaacatcacactctggggcctgttgtggggtggggggagaggggagggata-gcattaggagatatacctaatgctagatgacgagttaatggatgcagcacaccatcatggcacctgtatacatatgtaactaacctgcacattgtgcacatgtaccctaaaacttaaagtataataataataataataataataataataataaAGACC---AAAAAAAAA
s panTro5.chr6             30194548 959 + 175400573 ttcacaacctactcatctgacaaagggctaatatccagaatctacaatgaactccagcaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcaaaggacatgaacagacgcttctcaaaagaagacatttatgcagccaaaaaacacatgaaaaaatgctcatgatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggccatcattaaaaagtcgggaaacaaccagtgctggaaaggatgtggagaaataggaacacttttacactgttgattggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccacttgacccagccatcccattactgggtatatacccaaaggactataaatcatgctgctataaagacacatgcacacgtatgtttattgcggcactattcacaatagcaaagacttgaaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaattggaaatcatcattctcagtaaactatcgcaagagcaaaaaaccaaacaccacatgttctcactcatagatgggaactgaacaatgagaacacatggacacaggaaggggaacatcacactctggggcctgttgtggggtggggggaggggggagggata-gcattaggagatatacctaatgctaaatgaccagttaatgggtgcagcacaccatcatggcacatgtatacatatgtaactaacctgcacattgtgcacatgtaccctaaaacttaaagtataataataataataataataataataataa---AGACCGAAAAAAAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30424438 950 + 173848474 ttctcaacctactcatctgacaaagggctaatatccagaatctacaatgaactccagcaaatttacaag-aaaaaacaaacaaccccatcaaaaagtgggcaaaggacatgaacagatgcttctcaaaagaagacatttatgcagccaaaaaacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggccatcattaaaaagtcgggaaacaaccggtgctggaaaggatgtggagaaataggaacacttttacactgttgattggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccacttgacccagccatcccattactgggtatatacccaaaggactataaatcatgctgctataaagacacatgcacacgtatgtttattgcggcactattcacaatagcaaagacttgaaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcacgtcctttgtagggacatggatgaaattggaaatcatcattctcagtaaactatcgcaagggcaaaaaaccaaacaccacatgttctccctcatagatgggaactgaacaatgagaacacatggacacaggaaggggaacatcacactctggggcctgttgtggggtggggggaggggggagggataggcattaggagatatacctaatgctaaatgaccagttaataggtgcagcacaccatcatggcacatgtatacatatgtaactaacctgcacattgtgcacatgtaccctaaaacttaaagtataataataataataaTAATAAAAA---------AGACC---GAAAAAAAA
i panPan2.chr6             I 3 C 0
s gorGor5.CYUI01015528v1      79301 945 +   2037526 tttgcaacctactcatctgacaaagggctaatatccagaatctacaatgaactccaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcaaaggatatgaacagacgcttctcaaaagaagacatttatgcagccaaaagacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaacccttgtggaagtcagtgtggcgattcctcagggatctaggactagaaataccatttgacccagccatcccattactgggtatatacccaaaggactataaatcatgctgctataaagacacatgcacatgtatgtttattgcggcactattcacaatagcaaagacttgaaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcacgtcctttgtaggaacatggatgaaattggaaatcatcattctcagtaaacaatcgcaaggacaaaaaaccaaacaccacatgttctcactcatagatgggaactgaacaatgagaacacatggacacaggaaggggaacatcacactctggggcctgttgtggggtggggggagcggggagggata-gcattaggagatatacctaatgctagatgacgagttaatggatgcagcacaccatcatggcacctgtatacatatgtaactaacctgcacattgtgcacatgtaccctaaaacttaaagtataataataataataaTAA---------------AGACC--AAAAAAAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      42472 105 -    383796 I
e cebCap1.NW_016107755v1     550996 114 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e manLeu1.NW_012107142v1      40007   0 -    735854 C
e chlSab2.chr17            29341948  49 -  71996105 I
e cerAty1.NW_012002535v1     240757   2 -    863181 I
e macNem1.NW_012012100v1     134474  40 +   1495729 I
e macFas5.chr4             29951573   1 - 170955103 I
e rheMac8.chr4             30583279   0 + 172585720 C
e nomLeu3.chr1a            74788733   0 + 122973662 C

a score=1365.000000
s hg38.chr6_GL000254v2_alt  1324618 1 +   4827813 A
s panTro5.chr6             30195507 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30425388 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      80246 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30583279 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s manLeu1.NW_012107142v1      40007 1 -    735854 A
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      42472 105 -    383796 I
e cebCap1.NW_016107755v1     550996 114 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e chlSab2.chr17            29341948 49 -  71996105 I
e cerAty1.NW_012002535v1     240757 2 -    863181 I
e macNem1.NW_012012100v1     134474 40 +   1495729 I
e macFas5.chr4             29951573 1 - 170955103 I
e nomLeu3.chr1a            74788733 0 + 122973662 C

a score=1911.000000
s hg38.chr6_GL000254v2_alt  1324619 1 +   4827813 A
s panTro5.chr6             30195508 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30425389 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      80247 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30583280 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29951574 1 - 170955103 A
i macFas5.chr4             I 1 C 0
s manLeu1.NW_012107142v1      40008 1 -    735854 A
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      42472 105 -    383796 I
e cebCap1.NW_016107755v1     550996 114 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e chlSab2.chr17            29341948 49 -  71996105 I
e cerAty1.NW_012002535v1     240757 2 -    863181 I
e macNem1.NW_012012100v1     134474 40 +   1495729 I
e nomLeu3.chr1a            74788733 0 + 122973662 C

a score=18340.000000
s hg38.chr6_GL000254v2_alt  1324620 7 +   4827813 GAATGTT
s panTro5.chr6             30195509 7 + 175400573 GAATGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30425390 7 + 173848474 GAATGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      80248 7 +   2037526 GAATGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30583281 7 + 172585720 GAATGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29951575 7 - 170955103 GAATGTT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     240759 7 -    863181 GAATGTT
i cerAty1.NW_012002535v1   I 2 C 0
s manLeu1.NW_012107142v1      40009 7 -    735854 GAATGTT
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      42472 105 -    383796 I
e cebCap1.NW_016107755v1     550996 114 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e chlSab2.chr17            29341948 49 -  71996105 I
e macNem1.NW_012012100v1     134474 40 +   1495729 I
e nomLeu3.chr1a            74788733 0 + 122973662 C

a score=117504.000000
s hg38.chr6_GL000254v2_alt  1324627 52 +   4827813 TGTGCGGACAGCTACGCTCTAAGAATCCAGCTCTCTTGGGCTCCAAGCTCAA
s panTro5.chr6             30195516 52 + 175400573 TGTGCGGACAGCTACGCTCTAAGAATCCAGCTCTCTTGGGCTCCAAGCTCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30425397 52 + 173848474 TGTGCGGACAGCTACGCTCTAAGAATCCAGCTCTCTTGGGCTCCAAGCTCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      80255 52 +   2037526 TGTGTGGACAGCTACGCTCTAAGAATCCAGCTCTCTTGGGCTCCAAGCTCAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74788733 48 + 122973662 TGTGGGGACAGCGACGCTCTAAGAATCCAGCTCTCTCGGTCTCCAAGC----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30583288 50 + 172585720 TGTGCGGATAGCGACGCTCTAAGAATCCAGCTCACTTGGGCTCCAAGCTC--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29951582 44 - 170955103 TGTGCAGGCCTCCAAGCTGTAAGAATCCAGCCCATCTTGGTGAT--------
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     240766 50 -    863181 TGTACGGACAGCGACGCTCTAAGAATCCAGCTCTCTTGGGCTCCAAGCTC--
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1      40016 50 -    735854 TGTGCGGATAGCGACGCCCTAAGAATCCAGCTCACTTGGGCTCCAAGCTC--
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      42472 105 -    383796 I
e cebCap1.NW_016107755v1     550996 114 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e chlSab2.chr17            29341948 49 -  71996105 I
e macNem1.NW_012012100v1     134474 40 +   1495729 I

a score=1500.000000
s hg38.chr6_GL000254v2_alt  1324679 1 +   4827813 G
s panTro5.chr6             30195568 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30425449 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      80307 1 +   2037526 G
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             29951626 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     134514 1 +   1495729 G
i macNem1.NW_012012100v1   I 40 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      42472 105 -    383796 I
e cebCap1.NW_016107755v1     550996 114 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e manLeu1.NW_012107142v1      40066 0 -    735854 C
e chlSab2.chr17            29341948 49 -  71996105 I
e cerAty1.NW_012002535v1     240816 0 -    863181 C
e rheMac8.chr4             30583338 0 + 172585720 C
e nomLeu3.chr1a            74788781 0 + 122973662 C

a score=-49.000000
s hg38.chr6_GL000254v2_alt  1324680 1 +   4827813 C
s panTro5.chr6             30195569 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30425450 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      80308 1 +   2037526 C
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             29951627 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     134515 1 +   1495729 C
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29341997 1 -  71996105 C
i chlSab2.chr17            I 49 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      42472 105 -    383796 I
e cebCap1.NW_016107755v1     550996 114 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e manLeu1.NW_012107142v1      40066 0 -    735854 C
e cerAty1.NW_012002535v1     240816 0 -    863181 C
e rheMac8.chr4             30583338 0 + 172585720 C
e nomLeu3.chr1a            74788781 0 + 122973662 C

a score=37907.000000
s hg38.chr6_GL000254v2_alt  1324681 9 +   4827813 TCTCTGGGG
s panTro5.chr6             30195570 9 + 175400573 TCTCTGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30425451 9 + 173848474 TCTCTGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      80309 9 +   2037526 TCTCTGGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74788781 9 + 122973662 TCTCTGGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30583338 7 + 172585720 --TCTGGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29951628 9 - 170955103 TCTCTTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     134516 9 +   1495729 TCTCTCGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     240816 7 -    863181 --TCTGGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29341998 9 -  71996105 TCTCTTGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      40066 7 -    735854 --TCTGGAG
i manLeu1.NW_012107142v1   C 0 C 0
s aotNan1.NW_018496904v1      42577 9 -    383796 TCTCTTGGA
i aotNan1.NW_018496904v1   I 105 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     550996 114 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M

a score=652250.000000
s hg38.chr6_GL000254v2_alt  1324690 103 +   4827813 CTTCACCCAGTGACAATGGCCGGAAGGACAGGACACAGTGAAATGGCACCAGTGAGTCAGAGGCCAAAGGAGGATTTCTGGCCCCAGCGCGCAGGATGTGCTT
s panTro5.chr6             30195579 103 + 175400573 CTTCACCCAGTGACAATGGCCGGAAGGACAGGACACAGTGAAATGGCACCAGTGAGTCAGAGGCCAAAGGAGGATTTCTGGCCCCAGCGCGCAGGATGTGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30425460 103 + 173848474 CTTCACCCAGTGACAATGGCCGGAAGGACAGGACACAGTGAAATGGCACCAGTGAGTCAGAGGCCAAAGGAGGATTTCTGGCCCCAGCGCGCAGGATGTGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      80318 103 +   2037526 CTTCACCCAGTGACAATGGCCGGAAGGACAGGACACAGTGAAATGGCACCAGTGAGTCAGAGGCCAAAGGAGGATTTCTGGCCCCAGCGCGCAGGATGTGCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74788790 103 + 122973662 CTTCACCCAGTGACAATGGCCAGAAGGACAGGACACAGTGAAATGGCATCAGTGAGTCAGAGGCCAAAGGAGGATTTCTGGCCGGAGCACGCAGGATGTGCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30583345 103 + 172585720 CTTCACCCAGTGACAATGGGCGAAAGGACAGGACACAGTGAAATGGCACCAGTGAGTCAGAGGCCAAAGGAGGATTTCTGGCCAGAGGGCGCAGGATGTGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29951637 103 - 170955103 CTCCACCCACTGGCAGTAGCCGGAAGGACAGGACGCGGTGAAATGGCATCAGTGAGTCAGAGGCCAAAGGAGGATTCCCGGCCCCAGCGCGCAGGATGTGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     134525 103 +   1495729 CTCCACCCACTGGCAGTAGCCGGAAGGACAGGACGCGGTGAAATGGCATCAGTGAGTCAGAGGCCAAAGGAGGATTCCCGGCCCCAGCGCGCAGGATGTGCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     240823 103 -    863181 CTTCACCCAGTGACAATGGCCGGAAGGACAGGACACAGTGAAATGGCACCAGTGAGTCAGAGGCCAAAGGAGGATTTCTGGCCAGAGGGCGCAGGATGTGCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29342007 103 -  71996105 CTCCACCCAGTGGCAATAACGGGAAGGACAGGACGCGGTAAAATGGCATCAGTGAGTCAGAGGCCAAAGGAGGATTCCAGGCCCCAGCGCGCAGGATGTGCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      40073 103 -    735854 CTTCACCCAGTGACAATGGCCAGAAGGACAGTACACAGTGAAATGGCACCAGTGAGTCAGAGGCCAAAGGAAGATTTCTGGCCAGAGGGCGCAGGATGTGCTT
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     551110 103 -   1771730 CTTCACCCAGTGACAATGACCAGAAGGACAGGACGCAGTGAAATGGCACCAGTGAATCAGAGGCCAAAGGAGGATTCCCAGTCCCAGCACATAGGATGTGCTT
i cebCap1.NW_016107755v1   I 114 I 232
s aotNan1.NW_018496904v1      42586 103 -    383796 CTTCACCCAGTGATGATGACAAGAAGGACAGGACGCAGAGAAATTGTACCAGTGAATCAGAGGCCAAAGGGGGATTCCAGGTCCCAGAGTGTAGGATGTGCTT
i aotNan1.NW_018496904v1   C 0 I 186
e mm10.chr17               58009284 6253 -  94987271 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M

a score=722964.000000
s hg38.chr6_GL000254v2_alt  1324793 176 +   4827813 TGTTATAGTGGGGTTGGGATAGCGGAGCGGAGGCAAGGACACTCTGGGAATAAATGGC-GAGAAAA-A-GTGCGCTAGGGAGGATCCAAAGCCTTCAGACTT---CTTCCTTTCCTTCCTGTTGGGTGGGAGGGGACCAACATGGTCCCTGGTGGGGAGGTCCGTGGGATGCAGAGAATGGG
s panTro5.chr6             30195682 176 + 175400573 TGTCATAGTGGGGTTGGGATAGCGGAGCGGAGGCAAGGACACTCTGGGAATAAATGGC-GAGAAAA-A-GCGCACTAGGGAGGATCCAAAGCCTTCAGACTT---CTTCCTTTCCTTTCTGTTGGGTGGGAGGGGACCAACATGGTCCCTGGTGGGGAGGTCCGTGGAATGCAGAGAATGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30425563 176 + 173848474 TGTCATAGTGGGGTTGGGATAGCGGAGCGGAGGCAAGGACACTCTGGGAATAAATGGC-GAGAAAA-A-GCGCACTAGGGAGGATCCAAAGCCTTCAGACTT---CTTCCTTTCCTTCCTGTTGGGTGGGAGGGGACCAACATGGTCCCTGGTGGGGAGGTCCGTGGAATGCAGAGAATGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      80421 176 +   2037526 TGTTATAGTGGGGTTGGGATAGCGGAGCGGAGGCAAGGACACTCTGGGAATAAATGGC-GAGAAAA-A-GTGCGCTAGGGAGGATCCAAAGCCTTCAGACTT---CTTCCTTTCCTTCCTGTTGGGTGGGAGGGGACCAACACGGTCCCTGGTGGGGAGGTCCGTGGGATGCAGAGAATGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74788893 177 + 122973662 TGTCATAGTGGGGTTGGGGTAGCGGAGCGGAGGCAAGGACACTCCGGGAATAAATGGCAGAGAAAA-AGGTGCGCTAGGGAGGATCCAAAGCCTTCAGACTT---CTTCCTTTCCTTCCAGTTGGGTTGGAGGGGACCAACATGGTCCCTGGAGGGGAGGTCCGTGGGGTGCAGAGAATAG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30583448 180 + 172585720 TGTCATAGTGAGGTTGGGGTAGCGGAGCAGAGGCAAGGACACTCTGGGAATAAGTGGCAGAGAAAA-AGGCGCGCTAGGAAGGATCCAAAGCCTTTA-ACTTCTCCTTCCTTTCCTTCCAGTTGGATTGGAGGGGACCAGCATGGTCCCTGAATGGGAGGTCCGTGGGGTGCAGAGAATGCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29951740 182 - 170955103 TGTCATAGTGGGGTTGGGTTAGCGAAGCGGAGGCAAGGACACTCAGGGAATAAATGGCAGAGGAAGCAGTCGCGCTAGGGAGGATCCAAAGCCTTCAGACTTCTCCTTTCTTTTCTTCCTGTTGAGTTGGAGGGGACCAACGTGGTCCTGGGAGTGGAGGTCCGTGGGATGTAGAGAATGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     134628 182 +   1495729 TGTCATAGTGGGGTTGGGGTAGCGAAGCGGAGGCAAGGACACTCAGGGAATAAATGGCAGAGGAAGCAGTCGCGCTAGGGAGGATCCAAAGCCTTCAGACTTCTCCTTTCTTTTCTTCCTGTTGAGTTGGAGGGGACCAACGTGGTCCTGGGAGTGGAGGTCCGTGGGATGTAGAGAATGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     240926 165 -    863181 TGTCATAGTGAGGTTGGGGTAGTGGAGCGGAGGCAAGGACACTCTGGGAATAAGTGGCAGAGAAAA-AGGAGCGCTAGGAAGGATCCAAAGCCTTTA-ACTTCTCCTTCCTTTCCTTCCAGTTGGATTGGAGGGGACCAGCAT---------------GGTCCGTGGGGTGCAGAGAATGGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29342110 182 -  71996105 TGTCATAGTGGGGTTGGGGTAGCGAAGCGAAGGTAAGGACACTCAGGGAATAAATGGCAGAGGAAGCAGTCGCGCTAGGGAGGATCCAAAGCCTTCAGACTTCTCCTTTCTTTTCTTCCTGTTGGGTTGGAGGGGACCAACGTGGTACCGGGAGGGAAGGTCCGTGGGATGTAGAGAATGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      40176 180 -    735854 TGTCATAGTGAGGTTGGGTTAGCGGAGCAGAGGCAAGGACACTCTGGGAGTAAGTGGCAGAGAAAA-AGGCGCGCTAGGAAGGATCCAAAGCCTTTA-ACTTCTCCTTCCTTTCCTTCCAGTTGGATTGGAGGGGACCAGCATGGTCCCTGAAGGGGAGGTCCGTGGGGTGCAGAGAATGGG
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      42689 186 -    383796 I
e cebCap1.NW_016107755v1     551213 232 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M

a score=245662.000000
s hg38.chr6_GL000254v2_alt  1324969 47 +   4827813 GTCGCTGCAAAGGGGCGTTGCGCGCCCCACGCAAGGCTTCTGGCACT
s panTro5.chr6             30195858 47 + 175400573 GTCGCTGCAAAGGGGCGTTGCGCGCCCCACGCAAGGCTTCTGGCACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30425739 47 + 173848474 GTCGCTGCAAAGGGGCGTTGCGCGCCCCACGCAAGGCTTCTGGCACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      80597 47 +   2037526 GTCGCTGCAAAGGGGCGTTGCGCACCCCACGCAAGGCTTCTGGCACT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74789070 44 + 122973662 ---GCTGCAAAGGGGCGTTGCGCGCCTCACACAAGGCTTCTGGCACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30583628 47 + 172585720 GTCGCTGCAAAGGGGCGTTGCGCGCCCCACACAAGGCTTCTGGCACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29951922 47 - 170955103 GTCGCTGCAAAGGGGCGTTGCACGCCCCACACAAGGGTCCTGGTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     134810 47 +   1495729 GTCGCTGCAAAGGGGCGTTGCACGCCCCACACAAGGGTCCTGGTTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     241091 47 -    863181 GTCGCTGCAAAGGGGCGTTGCGCGCCCCACACAAGGCTTCTGGCACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29342292 47 -  71996105 GTGGCTGCAAAGGGGCGTTGCATGCCCCACCCAAGGGTCCTGGCTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      40356 47 -    735854 GTCACTGCAAAGGGGCGTTGCGCGCCCCACACAAGGCTTCTGGCACC
i manLeu1.NW_012107142v1   C 0 C 0
s aotNan1.NW_018496904v1      42875 47 -    383796 GTCGCTGCAAAGGGACATCACACCCCCTACACAAGGCTCCTGGCTCC
i aotNan1.NW_018496904v1   I 186 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     551213 232 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M

a score=2196313.000000
s hg38.chr6_GL000254v2_alt  1325016 384 +   4827813 CTTCTCCTAGCTACTACTGATGAGTTCAAACT-AGCAGGAGACTAAGACGTGTCCTTTGCAATGTAGACTCCATATCTTGCACTTCGGCTGGTTTACTAAATCCATCTTAATAAAACAC-AAAAACAAAGAACCAAATTCTGCGTGTGATATTTCTGACCTCTAGAAGGTCCT-CCCTCTCCCCATTCCTCGTGGGCTCCCTTCTTGCCCCGCCCCCTCCGCTTTGTCTCCACTTCTCCATCCCTGTCCATCTCTGGACCCCGCTCCTGAGTATCTCCCCCCTTCTTCAGAGGACTTCCCCTCATGGAGTACAGACTCCTCCACCTCCAGGAAAAAGAGACAAAGTCCACTGAGAAGGAACTGAGAGACTCCTGTTACTCCACCCCT
s panTro5.chr6             30195905 384 + 175400573 CTTCTCCTAGCTACTACTGATGAGTTCAAACT-AGCAGGAGACTAAGACGTGTCCTTTGCAATGTAGACTCCATATCTTGCACTTCGGCTGGTTTACTAAATCCATCTTAATAAAACAC-AAAAACAAAGAACCAAATTCTGTGTGTGATATTTCTGACCTCTAGAAGGTCCT-CCCTCTCCCCATTCCTCGTGGGCTCCCTTCTTGCCCCGCCCCCTCCGCTTTGTCTCCACTTCTCCATCCCTGTCCATCTCTGGACCCCGCTCCTGAGTATCTCCCCCCTTCTTCAGAGGACTTCCCCTCATGGAGTACAGACTCCTCAACCTCCAGGAAAAAGAGACAAAGTCCACTGAGAAGGAACTGAGAGACTCCTTTTACTCCACCCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30425786 384 + 173848474 CTTCTCCTAGCTACTACTGATGAGTTCAAACT-AGCAGGAGACTAAGACGTGTCCTTTGCAATGTAGACTCCATATCTTGCACTTCGGCTGGTTTACTAAATCCATCTTAATAAAACAC-AAAAACAAAGAACCAAATTCTGTGTGTGATATTTCTGACCTCTAGAAGGTCCT-CCCTCTCCCCATTCCTCGTGGGCTCCCTTCTTGCCCCGCCCCCTCCGCTTTGTCTCCACTTCTCCATCCCTGTCCATCTCTGGACCCCGATCCTGAGTATCTCCCCCCTTCTTCAGAGGACTTCCCCTCATGGAGTACAGACTCCTCAACCTCCAGGAAAAAGAGACAAAGTCCACTGAGAAGGAACTGAGAGACTCCTTTTACTCCACCCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      80644 385 +   2037526 CTTCTCCTAGCTACTACTGATGAGTTCAAACT-AGCAGGAGACTAAGACGTGTCCTTTGCAATGTAGACTCCATATCTTGCACTTCGGCTGGTTTACTAAATCCATCTTAATAAAACACAAAAAACAAAGAACCAAATTCTGCGTGTGATATTTCTGACCTCTAGAAGGTCCT-CCCTCTCCCCATTCCTCGTGGGCTCCCTTCTTGCCCCGCCCCCTCCGCTTTGTCTCCACTTCTCCATCCCTGTCCATCTCTGGACCCCGCTCCTGAGTATCTCCCCCCTTCTTCAGAGGACTTACCCTCATGGAGTGCAGACTCCTCCACCTCCGGGAAAAAGAGACAAAGTCCACTGAGAAGGAACTGAGAGACTCCTTTTACTCCCCCCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74789114 329 + 122973662 CTTCTCCCAGCTACTAGTGATGAGTTCAAACT-AGGAGGAGACTAAGACGCGTCCTTTGCAATGTACACTCCGTATCTTGCACTCCGGCTGGTT----------------------CAC----------------------------------TCTGACCGCTAGAAGGTTCT-CCCCCTCCCTGTTGCTCGCGTGCTCCCTTCTTACCCTGCCCCCTCTGCTTTGTCTCCACTTGCCTATCCCTGTCCATCTCTGGACCCCGCTCCTGAGTATCTCCCGCCTTCTTCAGAGGACTTCCCCTCATGGAGTACAGACTCCTCCACCTCCAGGAAAAAGAGACAAAGGCCACTGAGAGGGACCTGAGAGACTCCTGTTACTCGGCCCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30583675 384 + 172585720 CTTCTCCCAGCTACTCCTGATGAGTTCAAACT-AGGAGGAGACTAAGACTCGTCCTTTGCAATGTAGACTCCGTATCTCGCGCTTCGGCTGGTTTACTAAATCCATCTTAATAAAACAC-AAAAACCAAGAACCAAATTCTGCCTGTGATATTTCTGACCGCTAGAAGGTCCT-CCCCCTCCCCATTCCTCGCGTGCTCTCTTCTTGCCCCGCCCCCTCCACTTTGTCTCCACTTTCCCATCCTTGTCCATCTCTGGACCCCACTCCTGAGTATCTCCCCCCTTCTTCAGAGGACTTCGCCTCATGGACTACAGACTCCTCCACCTCCAGGAAAAAGAGACAAAGGCCACTGAGAGGGACCTGAGACACTCCTGTTACTCCGCCCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29951969 380 - 170955103 CTTCTCCCAGCTACTACTGATGAGTTCAAACT----AGGAGAGCAAGATTTGTCCTTCGCAAAGTAGACTCCTTATCTCACACTCCGGCTGGTTTACTAAATCCATTCTAGTAAAACAC-AAAAACCAACAACCGAATTCTGCTTGTGACATTTCTGACCGCTAGAAGGTCCT-CCCCCTCCCCATTCCTCGAGTGCTCTCTTCTTGCCTCGCCCCCTCCGCTTTGTCTCCACTTTCCCATCCTTGTCCATCTCTGGACCCAGCTCCTGAGTATC-TCCCCCTTCTTCAGAGGACGTCCCCTCATGGAGTACAGACTCCTCCACCTCCATGAAAAAGAGACAAAGGCCGCTGAGAGGGACCTGAAAGACTCCCGTTTCTCCGCCCCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     134857 380 +   1495729 CTTCTCCCAGCTACTACTGATGAGTTCAAACT----AGGAGAGCAAGATTTGTCCTTCGCAAAGTAGACTCCTTATCTCACACTCCGGCTGGTTTACTAAATCCATTCTAGTAAAACAC-AAAAACCAACAACCGAATTCTGCTTGTGACATTTCTGACCGCTAGAAGGTCCT-CCCCCTCCCCATTCCTCGAGTGCTCTCTTCTTGCCTCGCCCCCTCCGCTTTGTCTCCACTTTCCCATCCTTGTCCATCTCTGGACCCAGCTCCTGAGTATC-CCCTCCTTCTTCAGAGGACGTCCCCTCATGGAGTACAGACTCCTCCACCTCCATGAAAAAGAGACAAAGGCCGCTGAGAGGGACCTGAAAGACTCCCGTTTCTCTGCCCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     241138 384 -    863181 CTTCTCCCAGCTACTCCCGATGAGTTCAAACT-AGGAGGAGACTAAGACTCGTCCTTTGCAGTGTAGACTCCGTATCTTGCGCTTCGGCTGGTTTACTAAAACCATCTTAATAAAACAC-AAAAACCAAGAACCAAATTCTGCGTGTGATATTTCTGACCGCTAGGAGGTCCT-CCCCCTCCCCATTCCTTGCGTGCTCTCTTCTTGCCCCGCCCCCTCCACTTTGTCTCCACTTTCCCATCCCTGTCCATCTCTGGACCCCACTCCTAAGTATCTCCCCCTTTCTTCAGAGGACTTCGCCTCATGGAGTACAGACTCCTCCACCTCCAGGAAAAAGAGACAAAGGCCACTGAGAGGGACCTGAGACATTCCTGTTACTCTGCCCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29342339 384 -  71996105 CTTCTCCCAGCTACTACTGATGAGTTCAAACTAAGGAGGAGACCAAGATTTGTCCTTTGCAAAGTAGACTCCTTATCTCACACTCCGGCTGGTTTACTAAATCCATCCTAGTAAAACAG-AAAAACCAAGAACCGAATTCTGCGTGTGACATTTCTGACCGCTAGAAGGTCCT-CCCCATCCCCATTCCTCGCGTGCTCCCTCCATGCCTTGACCCCTCCGCTTTGTCTCCACTTTCCCATCCTTGTCCGTCTCTGGACCCCGCTCTTGAGTATCTCCCAC-TTCCTCAGAGGACGTCCCGTCATGGAGTAAAGACTCCTCCACCTCCAGGAAAAAGAGACAAAGTCCACTGAGAGGGACCTGAGAGACTCCTGTTACTCCGCCCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      40403 380 -    735854 CTTCTCCCAGCTACTCCTGATGAGTTCAAACT-AGGAGGAGACTAAGACTCGTCCTTTGCAATGTAGACTCCGTATCTCTCGCTTCGGCTGGTTTACTAAATCCATCT---TAAAACAC-AAAAACCAAGAACCAAATTCTGCGTGTGATATTTCTGACCGCTAGAAGGTCCT-CCCCCTCCCCATTCCTCGCGTGCTCGCTTCTTGCCCCGCCCCCTCCACTTTGTCTCCACTTCCCCATCCCTGTCCATCTCTGGACCCCGCTCCTGAGTATCTCCCCCTTTCTTCAGAGGACTTCCCCTCATGTAGTACAGACTCCTCCACCTCCAGGAAAAAGAGACAAAGGCCTCTGAGAGGGACCTGAGACACTCCTGTTACT-CGCCCCT
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     551445 383 -   1771730 CTTCTCCCAGCTACCACTGATGAGTTCAAACT-TGGAGGAGACTAAGACATGTCCTCTGCAATGTAGACTCTTTATCTCCCACCTCAGCTGGTTTACTAAATCCATCA-GATAAGACAC-AAAAACAAACAACCAAA-TCTGCCTGTGACTTCTCTGACTGCTAGAAGGTCCTGCCCCCTCCCAGTTTCTCACCTGCTTCCCTCTTGCCCCGCCACCTACGCTTTGTCACCACCTCCTCATCCTTGTCCCTCTCTGGACCCCACTCCTGAGTATCTCCCACATTCTTCAGAAAACTTCCCCTCATGGAGTACAGACTCCTCCACCTCCAGGAAAAAGAAACAAAGGCCACTGAGAGGGACCTGAGAGACTCCTCTAACCCCACCCCT
i cebCap1.NW_016107755v1   I 232 I 2173
s aotNan1.NW_018496904v1      42922 383 -    383796 CTTCTCCCAGCTACCACAGATGAGTTCAAACT-AGGAGGAGACTAAGACACGTCCTCTGCAATGTAAACTCCTTAACTCCCACCCTAGCTAGTTTACTAAATCCATCCTGATAAGACAC-CAAAACCAACAACCAAA-TCTGCCTGTG-CTTCTCTGACCGCTAGAAGGTCCTGCCCCCTCCCAGTTTCTCACCTGCTTCCTTCTTGCCCCGCCCCCTATGCTTTGTCTCCACCTCCTCATCCTTGTCCCTCTCTGGACCCCATTCCTGAGTATGTCCCACATTCTTCAGAGAACGACCTCTCATGGAGTACAGACTCTTCCACCTCCAGGAAAAAGAGACAAAGACCACTGAGAGGGACCTGAGAGACTCCTGTGACCCCACCCAT
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M

a score=32629.000000
s hg38.chr6_GL000254v2_alt  1325400 6 +   4827813 GAAGTC
s panTro5.chr6             30196289 6 + 175400573 GAAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30426170 6 + 173848474 GAAGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      81029 6 +   2037526 GAAGTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74789443 6 + 122973662 GAAGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30584059 6 + 172585720 GAAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29952349 6 - 170955103 GAGGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     135237 6 +   1495729 GAGGTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     241522 6 -    863181 GAAGTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29342723 6 -  71996105 GACGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      40783 6 -    735854 GAAGTC
i manLeu1.NW_012107142v1   C 0 C 0
s aotNan1.NW_018496904v1      43305 6 -    383796 GAGGTC
i aotNan1.NW_018496904v1   C 0 I 325
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M

a score=496947.000000
s hg38.chr6_GL000254v2_alt  1325406 158 +   4827813 AGCCTGTCCCACAACGCTCACTCAGGC----TGCA--tgtgtg----tgtgtgtgtgcctgtgtgtgtgtgcccgtgtgtgtgaatctgtgtgtgag--------agtgtgtctaaatatgtgtgtgaatgtgtgtgcgactgtgtgtgcctgtgtgtatcagttagcgtgtgtat
s panTro5.chr6             30196295 156 + 175400573 AGCCTATCCCACAATGCTCACTCAGGC----TGCA--tgtgtg----tgtgtgtgtgcctgtgtgtgtgtgcctgtgtgtgtgaatctgtgtgtgag----------tgtgtctaaatatgtgtgtgaaggtgtgtgcgactgtgtgtgcctgtgtgtatcagttagcgtgtgtat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30426176 158 + 173848474 AGCCTGTCCCACAATGCTCACTCAGGC----TGCAtgtgtgtg----tgtgtgtgtgcctgtgtgtgtgtgcctgtgtgtgtgaatctgtgtgtgag----------tgtgtctaaatatgtgtgtgaaggtgtgtgcgactgtgtgtgcctgtgtgtatcagttagcgtgtgtat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      81035 158 +   2037526 AGCCTGTCCCACAACGCTCACTCAGGC----TGCA--tgtgtg----tgtgtgtgtgcctgtgtgtgtgtgcccgtgtgtgtgaatctgtgtgtgag--------agtgtgtctaaatatgtgtgtgaatgtgtgtgcgactgtgtgtgcctgtgtgtatcagttagcgtgtgcat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74789449 170 + 122973662 AGCCTGTCTGCCAACGCTCGCTCAGGCTCtgtgtg--tgtgtg----tgtgtgtgtgtgtgtgtgtgtgtgcctgtgtgtgtgtatctttgtgtgaatctgtgtgcgtgtgtctaaatatgtgtgtgaatgtgtgtgcgactgtgtgtgcctgtgtgtatgagttagtgtgtgtgt
i nomLeu3.chr1a            C 0 I 122
s rheMac8.chr4             30584065 142 + 172585720 AGCCTGTCCCACAACGCTCCTTCAGGC----tgtg--tgtgtgtgtgtgtgtgtgtgcgtgtg------CGCCCgtgtgtgtgaat----------------------gtgtctaaatatgtgtgtgaatgtgtgtgcgactgtgtgtgcctgtgtgtatgagttagcgtgtgtgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29952355 152 - 170955103 AGCCTGTCC--CAGGGTTTGCTCAGGC----tgtg--tgtgtgtgaatgagtgtgtgcctgtg--------tgtgtgtgtgtgaatctgtgtgtgag--------agtgtgtctaaatatgtgtgtgagtgtgtgtgcaagtgtgtgttcctgtgtgtatgcgttagtgtgtgtgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     135243 150 +   1495729 AGCCTGTCC--CAGGGTTTGCTCAGGC----tgtg--tgtgtgtgaatgagtgtgtgcctgtgtgtgtgcatgtgtgtgtgtgaatctgtgt--------------gggtgtctaaatatgtgt----gtgtgtgtgcaagtgtgtgttcctgtgtgtatgcgttagtgtgtgtgt
i macNem1.NW_012012100v1   C 0 I 22
s cerAty1.NW_012002535v1     241528 140 -    863181 AGCCCATCCCACAATGCTCCTTCAGGC----tgtg--tgagtgtg--tgcctgtgtgtgtgtg--------cccgtgtgtgtgaatct--------------------gtgtctaaatatgtgtgtgaatgtgtgtgcgactgtgtgtgcctgtgtgtatgagttagcgtttgtgt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29342729 140 -  71996105 AGCCTGTCC--CAGGGTTCGCTCAGGC----tgtg--tgtgtgtgaatgagtgtgtgcctgtgtgtgt------gtgtatgtgaat----------------------ctgtgtgtgagagtgtgtgtgtgtgtgtgcaagggtatgttcctgtgtgtatgagttagtgtgtgtgt
i chlSab2.chr17            C 0 I 30
s manLeu1.NW_012107142v1      40789 148 -    735854 AGCCCATCTCACAACGCTCCTTCAGGC----tgtg--tgtgtgtgtgtgagtgtgtgcctgtgtgtgtgtgcccgtgtgtgtgaat----------------------ctgtctaaatatgtgtgtgaatgtgtgtgcgactgtgtgtgcctgtgtgtatgagttagcgtgtgtgt
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M

a score=-2961.000000
s hg38.chr6_GL000254v2_alt  1325564  8 +   4827813 ctgt--------------------atat
s panTro5.chr6             30196451  8 + 175400573 ctgt--------------------atgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30426334  8 + 173848474 ctgt--------------------atgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      81193  8 +   2037526 ctgt--------------------atgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74789741  8 + 122973662 ctgt--------------------gtgt
i nomLeu3.chr1a            I 122 C 0
s rheMac8.chr4             30584207  4 + 172585720 ctct------------------------
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     241668 24 -    863181 ctgtgagagagtgtgtacgtatgt----
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1      40937  4 -    735854 ctgt------------------------
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e chlSab2.chr17            29342869 30 -  71996105 I
e macNem1.NW_012012100v1     135393 22 +   1495729 I
e macFas5.chr4             29952507  0 - 170955103 C

a score=2800.000000
s hg38.chr6_GL000254v2_alt  1325572 1 +   4827813 g
s panTro5.chr6             30196459 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30426342 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      81201 1 +   2037526 g
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74789749 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1     135415 1 +   1495729 g
i macNem1.NW_012012100v1   I 22 C 0
s cerAty1.NW_012002535v1     241692 1 -    863181 g
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29342899 1 -  71996105 g
i chlSab2.chr17            I 30 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      80281 4785 -   1829203 M
e manLeu1.NW_012107142v1      40941 0 -    735854 C
e macFas5.chr4             29952507 0 - 170955103 C
e rheMac8.chr4             30584211 0 + 172585720 C

a score=-3306.000000
s hg38.chr6_GL000254v2_alt  1325573 11 +   4827813 agagagagtg--t
s panTro5.chr6             30196460 13 + 175400573 agagagagagagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30426343 13 + 173848474 agagagagagagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      81202  7 +   2037526 agagag------t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74789750 13 + 122973662 agtatgtgtgtgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30584211  8 + 172585720 ---gagacagt--
i rheMac8.chr4             C 0 I 150
s macFas5.chr4             29952507  8 - 170955103 ---gagtctgt--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     135416 11 +   1495729 agagagagtgt--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     241693 11 -    863181 tatgtgtgtgt--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29342900 11 -  71996105 agagagagtgt--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      40941 10 -    735854 -gagagagtgt--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      85196 11 -   1829203 AGAGAGAGAGA--
i colAng1.NW_012115577v1   M 4785 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I

a score=4758972.000000
s hg38.chr6_GL000254v2_alt  1325584 922 +   4827813 gtgtgtat--------gtgtgtgtgtgtgtgcgtgAATGAGAGTCAAAGTGCT-AAACCTGGCATCCAGGAAACCTCCCCACCTTGGCACTGCACGCAGGAGTCAGTGTTATGTGCACCTGTGCTTTTATTTCAGGAGCTGAGACAATTGTATTAATCAGATGTGCAGAGAGCCAAGGGCCCCACGCTGGAAAGCATCAGAGAGGAGGGTGAGATTGGAGGAGCCCCTGACTCCAAGTCTCTTGATCACTCTTACACA--GGGATCTTG---AAAAAAAAGTGCAGGACACTCCGTTCTCTCCTGGGAGTGACAGGGAAGCCAGAGCCACTGTGCGTGTCAAATTCCATCAAAGAAAAACCATTATAGCAAAACTTCCATGTCACAGTTTTAAGCCTGCACAATGACTCAAATAGAACCAATACC------------AAAAAAA-CAAA------------TTCCTAGCTCAGGTGAGGTCAGTGAAGTTGGCTGTCAGGTGTAAAGGAAACTGCAGGTATAAAGAAGGACACCTGTAGATAGGGCTGCAGCCCAGTCGCCCCTGCATCTTAGGGCGCCTGGAAAGGACTGTCTCCATTCAATAGTGCAGGGTGAGGACATTTTGGGGGAGAAATATAGACTGTCCTTAGACCCCTGGGGTTTGTACATTTACTTTCTGACTTTTTAGCTGTTGACTTCATTTTTGAAC--------------------AAATTACAGTTACATAAATTTGCTTTGACTTTAAGTGTAAAAC-AGGAAAATATTCCTGAAACAGGAAACAAGGGCCAAGTGACCTGCACTGTCACCCCCCTCTGTGG------------------------------CTCCCTGATGCAACACAATTGTGAGCCAACAAATCTATGGCTAGGGAAACAGTCAACTCCATTTCTGCAAATGTTTCAGATGTTCCTTCTTGCTGAGTAATGTT-----CTAGTTTTACCCCAGCCTTAATATTTTAAGTCTATATTTTC
s panTro5.chr6             30196473 925 + 175400573 gtgtgtat--------gcgtgtgtgtgtgtgtgtgAATGAGAGTCAAAGTGCT-AAACCTGGCATCCAGGAAACCTCCCCACCTTGGCACTGCATGCAGGAGTCAGTGTTATGTGCACCTGTGCTTTTATTTCAGGAGCTGGGACAATTGTATTAATCAGATGTGCAGAGAGCCAAGGGCCCCACACTGGAAAGCATCAGAGAGGAGGGTGAGATTGGAGGAGCCCCTGACTCCAAGTCTCTTGATCACTCTTACACACAGGGATCTTG---AAAAAAAAGTGCAGGACACTCCGTTCTCTCCTGGGAGCAACAGGGAAGCCAGAGCCACCATGCGTGTCAAATTCCATCAAAGAAAAACCATTATAGCAAAACTTCCATGTCACAGTTTTAAGCCTGCACAATGACTCAAATAGAACCAATATC------------AAAAAAAACAAA------------TTCCTAGCTCAGGTGAGGTCAGTGAAGTTGGCTGTCAGGTGTAAAGGAAACTGCAGGTATAAAGAAGGACACCTGTAGGTAGGGCTGCAGCCCAGTCGCCCCTGCATCTTAGGGCGCCTGGAAAGGACCGTCTCCATTCAATAGTGCAGGGTGAGGACATTTTGGGGGAGAAATATAGACTGTCCTTAGACCCCTGGGGTTTGTACATTTACTTTCTGACTTTTTAGCTGTTGACTTCATTTTTGAAC--------------------AAATTACAGTTACATAAACTTGCTTTGACTTTAAGTGTAAAAT-AGGAAAATATTCCTGAAACAGGAAACAAGGGCCAAGTGACCTGCACTGTCACCCCCCTCTGTGG------------------------------CTCCCTGATGCAACACATTTGTGAGCCAACAAATCCATGGCTAGGGAAACAGTCAACTCAATTTCTGCAAATGTTTCAGATGTTCCTTCTTGCTGAGTAATGTT-----CTAGCTTTACCCCAGCCTTAATATTTTAAGTCTATATTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30426356 925 + 173848474 gtgtgtat--------gcgtgtgtgtgtgtgtgtgAATGAGAGTCAAAGTGCT-AAACCTGGCATCCAGGAAACCTCCCCACCTTGGCACTGCATGCAGGAGTCAGTGTTATGTGCACCTGTGCTTTTATTTCAGGAGCTGGGACAATTGTATTAATCAGATGTGCAGAGAGCCAAGGGCCCCACACTGGAAAGCATCAGAAAGGAGGGTGAGATTGGAGGAGCCCCTGACTCCAAGTCTCTTGATCACTCTTACACACAGGGATCTTG---AAAAAAAAGTGCAGGACACTCCGTTCTCTCCTGGGAGCGACAGGGAAGCCAGAGCCACCATGCGTGTCAAATTCCATCAAAGAAAAACCATTATAGCAAAACTTCCATGTCACAGTTTTAAGCCTGCACAATGACTCAAATAGAACCAATATC------------AAAAAAAACAAA------------TTCCTAGCTCAGGTGAGGTCAGTGAAGTTGGCTGTCAGGTGTAAAGGAAACTGCAGGTATAAAGAAGGACACCTGTAGGTAGGGCTGCAGCCCAGTCGCCCCTGCATCTTAGGGCGCCTGGAAAGGACCGTCTCCATTCAATAGTGCAGGGTGAGGACATTTTGGGGGAGAAATATAGACTGTCCTTAGACCCCTGGGGTTTGTACATTTACTTTCTGACTTTTTAGCTGTTGACTTCATTTTTGAAC--------------------AAATTACAGTTACATAAACTTGCTTTGACTTTAAGTGTAAAAT-AGGAAAATATTCCTGAAACAGGAAACAAGGGCCAAGTGACCTGCACTGTCACCCCCCTCTGTGG------------------------------CTCCCTGATGCAACACATTTGTGAGCCAACAAATCCATGGCTAGGGAAACAGTCAACTCCATTTCTGCAAATGTTTCAGATGTTCCTTCTTGCTGAGTAATGTT-----CTAGCTTTACCCCAGCCTTAATATTTTAAGTCTATATTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      81209 923 +   2037526 atgtgtat--------gcgtgtgtgtgtgtgcgtgAATGAGAGTCAAAGTGCTAAAACCTGGCATCCAGGAAACCTCCCCACCTTGGCACTGCACGCAGGAGTCAGTGTTATGTGCACCT-TGCTTTTATTTCAGGAGCTGAGACAATTGTATTAATCAGATGTGCAGAGAGCCAAGGGCCCCACACTGGAAAGCATCAGAGAGGAGGGTGAGATTGGAGGAGCCCCTGACTCCAAGTCTCTTGATCACTCTTACACACAGGGATCTTG---AAAAAAAAGTGCAGGACACTCCATTCTCTCCTGGGAGCGACAGGGAAGCCAGAGCCACTGTGCGTGTCAAATTCCATCAAAGAAAAACCATTATAGCAAAACTTCCATGTCACAGTTTTAAGCCTGCACAATGACTCAAATAGAACCAATACC------------AAAAAAA-CAAA------------TTCCTAGCTCAGGTGAGGTCAGTGAAGTTGGCTGTCAGGTGTAAAGGAAACTGCAGGTATAAAGAAGGATACCTGTAGGTAGGGCTGCAGCCCAGTCGCGCCTGCATCTTAGGATGCCTGGAAAGGACAGTCTCCATTCAATAGTGCAGGGTGAGGACATTTT-GGGGAGAAATATAGACTGTCCTTAGACCCCTGGGGTTTGTACATTTACTTTCTGACTTTTTAGCTGTTGACTTCATTTTTGAAC--------------------AAATTACAGTTACATAAATTTGCTTTGACTTTAAGTGTAAAAC-AGGAAAATATTCCTGAAACAGGAAACAAGGGCCAAGTGACCTGCACTGTCACCCCCCTCTGTGG------------------------------CTCCCTGATGCAACACAATTGTGAGCCAACAAATCTATGGCTAGGGAAACAGTCAATTCCATTTCTGCAAATGTTTCAGATGTTCCTTCTTGCTGAGTAATGTT-----CTAGTTTTACCCCAGCCTTAATATTTTAAGTCTATATTTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74789763 926 + 122973662 gtctgtgt--------gtgtgtgtgtgtgtgtgtgAACGAGAGTCAAAGTGCT-AAACCTGGCATCCAGGAAACCTCCCCACCTTGGCACTGCATGCAGGAGTCAGTGTTATGTGCACCTGTGCTTTTATTTCAGGAGCTGGGACAATTATATTAATCAGATGTGCAGAGAGCCAAGGCCCCCACACTGGAAAGTATTAGAGAGGAGGGTGAGATTGGAGTGGCCCCTGACTCCAAGTCTCCTGATCACTCTTACACACAGGGATCTTGAAAAAAAAAAAGTGCAAGACACTCCATTCCCTCCTGGGACTGACAGGTAGGCCAGAGCCACCATGCGTGTCAAATGCCATCAAAGAAAAACCATTATAGCAAAATTTCCATGTCACAGTTTTAAGCCTGCACCATGGCTCAAATAGAACCAATATC------------AAAAAAA-CAAA------------TTCCTAGGTCAGGTGAGGTTAGTGAAGTTGGCTGTCAGGTATAAAGGAAACTGCCGGTATGAAGAAGGACACCTCTAGCTAGGGCTGCAGCCCAATCGCCCCTGCATCTTAGGGCCCCTGGAAAGGACCGTCTCCATTCAATAGTGCAGGGTGAGGACATTTTGGGGGAGAAATGTAGACTGTCCTTAGACCCCTGGGGTTTGTACATTTACTTTCTGACTTTTTAGGTGTTGACTTCATTTTTGAAC--------------------AAATTACAGCTACAT-AATTTGCTTTGACTTTAAGTGTAAAAC-AGGAAAATGTTTCTGAAACAGGAAACAAGGGAAAAGTGACCTCCACTGTCACCGCCCTCTGTGG------------------------------CTCCCTGAGGCAATAAAATTGTGAGCCAACAAATCCATGGCTAGGTAGACAGTAAACTCCATTTCAGCAAATGTTTCAGATGTTCCTTCTTGCCTAGTAATGTT-----CTAGCTTTACCCTAGCCTTAATATTTTAAGTCTATATTTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30584369 935 + 172585720 gtgtgtgt--------gtgtgtgtgtgtgtgtgtgAATGGGAGTCAAAGTGCT-AAACTTGGCATCCAGGAAACCTCCCCACCTTGGCACTGCACGCAGGAGTCAGTGTTATGTGCACCTGTGCTTTTATTTCAGGAGCTGAGACAATTATATTAATCAGATGTGCAGAGAGCCAAGGCCCCCACAGTGGAAAGCATTAGAGAGCAGGGTGAGATTGGAGGGGCCCCTGACTCCAAGTCTCCTGATCCCTCTTACACACAAGGATCTTG---AAAAAAAAGTGCAGGACACTCCATTCTCTCCTGGGACCGACAGGGAAGCCAGAGCCACCATGTATGTCAAATTTCATCAAAGAAAAAAAATTATAGCAAAATTTCCATGTCACAGTTTTAAGCCTGCACAATGGCTCAAATAGAACCAATATCaaataaataaataaataaa-taaa------------tTCCTAGCTCAGGTGAGATCACTGAAGTTGGCTGTCAGGTGCTAAGGAAACTGCAGGCATAAAGAAGGTCACCTCTAGCTAGGGCTGCAGCCCAATTGCCCCTGCATCTTAGGGCCCCTGGAAAGGACCCTCTCCATTCAATAGCGCAGGGTGTGGATATTTTGGGGGAGAAATGTAGACTGTCCTTAGACCCCTGGGGTTTGTACATTCACTGTCTGACTTTTTAGGTGTTGATTTCATTTTTGAAC--------------------AAATTACAGTTACAT-AATTTGCTTTAACTTTAAGTGTAAAAT-AGGAAAATGTTCCTGAAACAGGAAACAAGGGCCAGGTGACCTGCACTGTCACCCCTCTCTGTGG------------------------------CTCCCTGATGCAATAAAACTGTGAGCCAACAAATCCATGGCTAGGTAAACAGTCAACTCCATTTCAGCAAATGTTTCAGAGGTTCCTTCTCGCCTAGCAATGTT-----CTATCTTTACCACCGCTTTAATATTTTAAGTCTATCTTTTC
i rheMac8.chr4             I 150 C 0
s macFas5.chr4             29952515 986 - 170955103 gtttatgtgagatacagagagagagagagtgtgtgaatgagagTCAAAGTGCT-AAACCTGGCATCCAGGAAACCTCCCCACCTTGGCACTGCATTCAGGAGTCAGTGTTATGTGCACCTGTGCTTTTATTTCAGGAGCTGGGACAATTATATTAACCAAATATGCAGAGTGCCAAGGTCCCCACCCCAAAAAGCGTTAAAGAGGAGGGTGAGATTGGAGGGGCCCCTGACTCCAAGTCTCCTGATTCCTTCTACACATGGGGATCTTGAAAAAAAAAAAGTGCAGGACATTCCATTCCCTCCTGGGACCGACAGGGAAGCCAGAGCCACCGTGCATATCAAATTCCATCAAAGAAAAACTATTATAGCAAAATTTCCATGCCACATTTTTAAATCTACACAATGGCTCAAATAGAACCACCACC------------AAAAAAA-TGAA------------TTCCTAGCTCAGGTGAGATCACTGAAGTTGGCTGCCAGGCG-TAAGGAAACTGCAGGTATAAA-AAGGACATCTCTAGTTAGGGCTGCAGCCCAGTTGCCCCTGCATCTTAGGGCCCTTTGAGAGGACCCAATCCATTCAATAGTGCAGGATGAGGCAATTTTTGGTGAGAAAGGTAGACTCTCCTTAGACCTCTGGGGTTTGTACATTTACTTTCTGACTTTTTAGATGTTGACTTTATTTTTGAACAAATTACAGTTATGCAATTTAAATTACAGTTATGC-AATTTGCTTTGACTTTAAGTGTAAAAC-AGG-AAATATTCCTGAAACAGAAAACAAGGGCCAGGTGACCTGCACTGTCACCCCCCTCTGTGGCTCCCTGATGCAATAAAATTGTGAGCCAACCTTCCTGATGCAATAAAATTGTGAACCAACAAATCCATGGCTAGGCAAACAGTAAACTCCATTTCAGCAAATGTTTCAGAGGTTCCTTCTTGCCTAGTAATGTTCTAGACTAGATTTACCCTAGCCTTAATATTTTACGTCTATATTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     135427 931 +   1495729 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagaatgagagTCAAAGTGCT-AAACCTGGCATCCAGGAAACCTCCCCACCTTGGCACTGCATTCAGGAGTCAGTGTTATGTGCACCTGTGCTTTTATTTCAGGAGCTGGGACAATTATATTTACCAAATATGCAGAGTGCCAAGGTCCCCACCCCAAAAAGCGTTAAAGAGGAGGGTGAGATTGGAGGGGCCCCTGACTCCAAGTCTCCTGATTCCTTCTACACATGGGGATCTTGAAAAAAAAAAAGTGCAGGACATTCCATTCCCTCCTGGGACCGACAGGGAAGCCAGAGCCACCGTGCATATCAAATTCCATCAAAGAAAAACTATTATAGCAAAATTTCCATGCCACATTTTTAAATCTACACAATGGCTCAAATAGAACCACCACC------------AAAAAAA-TGAA------------TTCCTAGCTCTGGTGAGATCACTGAAGTTGGCTGCCAGGCG-TAAGGAAACTGCAGGTATAAA-AAGGACATCTCTAGTTAGGGCTGCAGCCCAGTTGCCCCTGCATCTTAGGGCCCTTTGAGAGGACCCAATCCATTCAATAGTGCAGGGTGAGGCAATTTTTGGTAAGAAAGGTAGACTCTCCTTAGACCTCTGGGGTTTGTACATTTACTTTCTGACTTTTTAGATGTTGACTTCATTTTTGAAC--------------------AAATTACAGTTATGT-AATTTGCTTTGACTTTAAGTGTAAAAC-AGG-AAATATTCCTGAAACAGAAAACAAGGGCCAGGTGACCTGCACTGTCACCCCCCTCTGTGG------------------------------CTTCCTGATGCAATAAAATTGTGAACCAACAAATCCATGGCTAGGCAAACAGTAAACTCCATTTCAGCAAATGTTTCAGAGGTTCCTTCTTGCCTAGTAATGTT-----CTAGATTTACCCTAGCCTTAATATTTTACGTCTATATTTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     241704 911 -    863181 atgtgtgt--------gtgtgtgtgtgtgtgtgtgAATGGGAGTCAAAGTGCT-AAACCTGGCATCCAGGAAACCTCCCCACCTTGGCACTGCACGCAGGAGTCAGTGTTATGTGCACCTGTGCCTTTATTTCAGGAGCTGGGACAATTATATTAATCAGATGTACAGAGAGCCAAGGCCCCCACACTGGAAAGCATTAGAGAGGAGGGTGAGATTGGAGGGGCCCCTGACTCCAAGTCTCCTGATCCCTCTTACACACAAGGATCTTG---AAAAAAAACTGCAGGACACTCCATTCTCTCCTGGGACCGATAGGGAAGCCAGAGCCACCATGTATCTCAAATTTCATCAAAGAAAAAAAATTAGAGCAAAATTTCCATGTCACAGTTTTAAGCCTGCACAATGGCTCAAATAGAACCA--ATTAAA---------AAAAAAA-AAAT------------TTCCTAGCTCAGGTGAGATCACTGAAGTTGGCTGTCAGGTGTTAAGGAAACTGCAGGCATAAAGAAGGTCACCTCT------------AGCCCAATCGCCCCTGCATTTTAGGGCCCCTGGAAAGGACCCTCTCCATTCAATAGCGCAGGGTGTGGATATTTTGGGGGAGAAATGTAGACTGTCCTTAGACCCTTGGGGTTTCTACATTCACTTTCTGACTTTTTAGGTGTTTACTTCATTTTTGAAC--------------------AAATTACAGTTACAC-AATTTGCTTTAACTTTAAGTGTAAAAC-AGGAAAATATTCCTGAAACAGGAAACAAGGGCCAGGTGACCTGCACTGTCACCCCTCTCTGTGG------------------------------CTCCCTGATGCAATAAAATTGTGAGCCAACAAATCCATAGCGAGGTAAACAGTCAA-TCCATTTCAGCAAATGTTTCAGCGGTTCCTTCTTGCCTAGCAATGTT-----CTATCTTTACCACCGCTTTAATATTTTAAGTCTATCTTTTC
i cerAty1.NW_012002535v1   C 0 I 5
s chlSab2.chr17            29342911 921 -  71996105 gtgtgtgt--------gtgtgtgtgtgagagagagaatgagagTCAAAGTGCT-AAACCTGGCATCCAGGAAACCTTCCCACCTTGGCACTGCATGCAGGAGTCAGTGTTATGTGCACCTGTGCTTTTATTTCAGGAGCTGGGACAATTATATTAACTAGATGTGCAGAGTGCCAAGGTCCCCACCCCAAAAAGCATTAGAGAGGAGGGTGACATTGGAGGGGCCCCTGACTCCAACTCTCCTGATTCCTTCTACACATGGGGATCTTG---AAGAAAAAGTGCAGGACACTCCATTCCCTCCTGGGACCGACAGGGAAGCCACAGCCACCGTGCATGTCAAATTCCATCAAAGAAAAACTATTATAGCAAAATTTCCATGTCACATTTTAAAATCTACACAATGGCTCAAATAGAACCACCATC------------AAAAAAA-CGAA------------TTCCTAGCTCAGGTGAGATCACTGAAGTTGGCTGCCAGGCG-TAAGGAAACTGCAGGTATAAAGAAGGACACCTCTAGTTAGGGCTGCAGCCCAGTCGCCCCTGCATCTTAGGGCCCCTGAAAAGGACCCTCTCCATTCGATAGTGCAGGGTGAGGCAATTTTTGTTGAGAAATGTAGACTCTCCTTAGACCCCTGGGGTTTGTACATTCACTTTCTGACTTTTTAGATGTTGACTTCATTTTTGAAC--------------------AAATTACAGTTACGT-GATTTGCTTTGACTTTAAGTGTAAAAC-AGG-AAATGTTCCTGAAACAGGAAACAAGGGACAGGTGACCTGCACTGTCACCTCCCTCTGTGG------------------------------CTCCCTGTTGCAATAAAATTGTGAGCCAACAAATCCATGGCTAGGTAAACAGTAAAGTCAATTTCGGCAAATGTTTCAGAGGTTCCTTCTTGCCTAGTAACGTT-----CTAGCTTTACCCCAGTCTTAATATTTTAAGTCTACATTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      40951 923 -    735854 gtacgcgt--------gtgtttgtgtgtgtgtgAGAATGGGAGTCAAAGTGCT-AAACTTGGCATCCAGGAAACCTCCCCACCTTGGCACTGCACGCAGGAGTCAGTGTTATGTGCACCTGTGCTTTTATTTCAGGAGCTGGGACAATTATATTAATCAGATGTGCAGAGAGCCAAGGCCCCCACACTGGAAAGCGTTAGAGAGGAGGGTGAGATTGGAGGGTTCCCTGACTCCAAGTCTCCTGATCCCTCTTACACACAGGGATCTTG---ACAAAAAAGTGCAGGACACTCCATTCTCTCCTGGGACCGACAGGGAAGCCAGAGCCACCGTGCATGTCAAATTCCATCAAAGAAAAAAAATTATAGCAAAATTTCCATGTCACACTTTTAAGCCTGCACAATGGCTCAAATAGAACCAATACC------------aaataaa-gaaataaataaataaCTTCCTAGCTCAGGTGAGATCACTGAAGTTGGCTGTCAGGTGTTAAGGAAACTGCAGGCATAAAGAAGGTCACCTCT------------AGCCCAATCGCCCCTGCATCTTAGGGCCCCTGGAAAGGACCCTCTCCATTCAATAGTGCAGGGTGTGGATATTTTGGGGGAGAAATGTAGACTGTCCTTAGACCCCTAGGGTTTGTACATCCACTGTCTGACTTTTTAGGTGTTGACTTCATTTTTGAAC--------------------AAATTACAGTTACAT-AATTTGCTTTAACTTTAAGTGTAAAACAAGA-AAATATTCCTGAAACAGGAAGCAAGGGCCAGGTGACCTGCACTGTCACCCCTCTCTGTGG------------------------------CTCCCTGATGCAATAAAATTGTGAGCCAACAAATCCATGGCTAGGTAAACAGTCAACTCCATTTCAGCAAATGTTTCAGCGGTTCCTTCTTGCCTAGCAATGTT-----CTATCTTTACCACCGCTTTAATATTTTAAGTCTATCTTTTC
i manLeu1.NW_012107142v1   C 0 I 5
s colAng1.NW_012115577v1      85207 904 -   1829203 gtgtgtgt--------gtgtgtgtgtgtgtgtgtgAATGAGAGTCAAAGTGCT-AAACCTGGCATCCAGGAAAC--GCTCACCTTGGCATTGCATGCAGGAATCAGCGTTATGTGCACCTGTGCTTTTATTTCAGGAGCTGGGACAATTGTATTAACCAGATGTGCAGAGAGCCAAGGTCCCCACCCCAAAAAGCATTAGAGAGGAGGGTGAGATTGGAGGGGCCCCTGACTCCAAGTCTCCTGATTCCTTCTACACATG------------------AAGTGCAGGACACTCCATTCCCTCCTAGGACCAACAGGGAAGCCAGAGCCACCGTGCATGTCAAATTCCATCACAGAAAAACTATTGTAGCAAAATTTCCATGTCACATTTTTAAATCTACACAATGGCTCAAATAGAACCACCATC------------AAAAAAA-GGAA------------TTTCTAGCTCAGGTGAGATCACTGAAGTTGGCTGCCAGGTG-TAAGGAAACTGCAGATATAAAGAAGGACACCTCTAGTTAGGGCTGCAGCCCAATCGCCCCTGCATCTTAGGGCCCCTGGAAAGGACCCTCTCCATTCGCTAGTGCAGGGTGAGGCAATTTTCGGTGAAAAATGTAGACTCTCCTTAGACCCCTGGGGTTTGTACATTTACTTTCTGACTTTTTAGATGTTGACTTCATTTTTGAAC--------------------AAATTACAGTTACGT-AATTTGCTTTGACTTTAAGTGTAAAAC-AGG-AAATATTCCTGAAACAGGAAACAAGGGCCAGGTGACCTGCACTGTCACCTCCCTCTGTGG------------------------------CTCCCTGATGCAATAAAATTGTGAGCCAACAAATCCATGGCTAGGTAAACAGTCAACTCCATTTCAGCAAATGTTTCAGGTGTTCCTTcttgcctagtaacgtt-----ctagctttaccccagtcttaatattttaagtctatattttc
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I

a score=16458.000000
s hg38.chr6_GL000254v2_alt  1326506 5 +   4827813 CCAGC
s panTro5.chr6             30197398 5 + 175400573 CCAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30427281 5 + 173848474 CCAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      82132 5 +   2037526 CCAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74790689 5 + 122973662 TTAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30585304 5 + 172585720 CTAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29953501 5 - 170955103 CTAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     136358 5 +   1495729 CTAGC
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29343832 5 -  71996105 CTAGC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1      86111 5 -   1829203 ctagc
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e manLeu1.NW_012107142v1      41874 5 -    735854 I
e cerAty1.NW_012002535v1     242615 5 -    863181 I

a score=6461.000000
s hg38.chr6_GL000254v2_alt  1326511 3 +   4827813 TGt
s panTro5.chr6             30197403 3 + 175400573 GGt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30427286 3 + 173848474 TGt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      82137 3 +   2037526 TGT
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             29953506 3 - 170955103 TGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     136363 3 +   1495729 TGT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29343837 3 -  71996105 TGT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1      86116 3 -   1829203 tgt
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e manLeu1.NW_012107142v1      41874 5 -    735854 I
e cerAty1.NW_012002535v1     242615 5 -    863181 I
e rheMac8.chr4             30585309 0 + 172585720 C
e nomLeu3.chr1a            74790694 0 + 122973662 C

a score=1365.000000
s hg38.chr6_GL000254v2_alt  1326514 1 +   4827813 t
s panTro5.chr6             30197406 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30427289 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      82140 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             29953509 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s colAng1.NW_012115577v1      86119 1 -   1829203 t
i colAng1.NW_012115577v1   C 0 I 1223
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e manLeu1.NW_012107142v1      41874 5 -    735854 I
e chlSab2.chr17            29343840 0 -  71996105 C
e cerAty1.NW_012002535v1     242615 5 -    863181 I
e macNem1.NW_012012100v1     136366 0 +   1495729 C
e rheMac8.chr4             30585309 0 + 172585720 C
e nomLeu3.chr1a            74790694 0 + 122973662 C

a score=709.000000
s hg38.chr6_GL000254v2_alt  1326515 6 +   4827813 --tttttt
s panTro5.chr6             30197407 6 + 175400573 --ttttgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30427290 5 + 173848474 --tttt-t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      82141 6 +   2037526 --tttttt
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             29953510 6 - 170955103 GGTTTT--
i macFas5.chr4             C 0 I 19
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      86120 1223 -   1829203 I
e manLeu1.NW_012107142v1      41874 5 -    735854 I
e chlSab2.chr17            29343840 0 -  71996105 C
e cerAty1.NW_012002535v1     242615 5 -    863181 I
e macNem1.NW_012012100v1     136366 0 +   1495729 C
e rheMac8.chr4             30585309 0 + 172585720 C
e nomLeu3.chr1a            74790694 0 + 122973662 C

a score=158009.000000
s hg38.chr6_GL000254v2_alt  1326521 299 +   4827813 gtt------gttgttgttgtttttgagaaggagtctcattctgtcacccaggctggagtgcagtggcacgatctcggctcactgcaacctccgcctctcaggttcaagcgattctcctgcctcagcctccccagtagctgggattacaggggcccgccaccacgcttggctaatttctgtatttttagtagagatggggtttcactgtgttggccaggatggtctcaatctcctgacctcgtgatctgcccgcctcggcctcccaaagtgctgggattacaggcatgagccactgcgccaggccT
s panTro5.chr6             30197413 299 + 175400573 ttg------tttgtttgtttttttgagaaggagtctcgttctgtcacccaggctggagtgcactggcacaatctcggctcactgcaacctccgcctctcgggttcaagcgattctcctgcctcagcctccccagtagctgggattacaggggcccgccaccacacctggctaatttctgtatttttagtagagatggggtttcaccgtgttggccaggatggtctcaatctcctgacctcgtgatctgcccgcctcggcctcccaaagtgctgggattacaagcatgagccactgcgccgggccT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30427295 299 + 173848474 ttg------tttgtttgtttttttgagaaggagtctcgttctgtcacccaggctggagtgcagtggcacaatctcagctcactgcaacctccgcctctcgggttcaagcgattctcctgcctcagcctccccagtagctgggattacaggggcccgccaccacacctggctaatttctgtatttttagtagagatggggtttcaccgtgttggccaggatggtctcaatctcctgacctcgtgatctgcccgcctcggcctcccaaagtgctgggattacaagcatgagccactgcgccgggccT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      82147 304 +   2037526 ttgttgttttttttttttttttttgagaaggagtctcgttctgtcacccaggctggagtgcagtggcacgatctcggctcactgcaacctccgcctctcaggttcaagcgattctcctgcctcagcct-cccagtagctgcgattacaggggcccgccaccacgcctggctaatttctgtatttttagtagagatggggtttcactgtgttggccaggatggtctcagtctcctgaccttgtgatctgcccgcctcggcctcccaaagtgctgggattacaggcatgagccactgcgccaggccT
i gorGor5.CYUI01015528v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      86120 1223 -   1829203 I
e manLeu1.NW_012107142v1      41874   5 -    735854 I
e chlSab2.chr17            29343840   0 -  71996105 C
e cerAty1.NW_012002535v1     242615   5 -    863181 I
e macNem1.NW_012012100v1     136366   0 +   1495729 C
e macFas5.chr4             29953516  19 - 170955103 I
e rheMac8.chr4             30585309   0 + 172585720 C
e nomLeu3.chr1a            74790694   0 + 122973662 C

a score=7896.000000
s hg38.chr6_GL000254v2_alt  1326820 3 +   4827813 TGT
s panTro5.chr6             30197712 3 + 175400573 TGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30427594 3 + 173848474 TGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      82451 3 +   2037526 TGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74790694 3 + 122973662 TGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30585309 3 + 172585720 TGT
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     242620 3 -    863181 TGT
i cerAty1.NW_012002535v1   I 5 C 0
s manLeu1.NW_012107142v1      41879 3 -    735854 TGT
i manLeu1.NW_012107142v1   I 5 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      86120 1223 -   1829203 I
e chlSab2.chr17            29343840 0 -  71996105 C
e macNem1.NW_012012100v1     136366 0 +   1495729 C
e macFas5.chr4             29953516 19 - 170955103 I

a score=4095.000000
s hg38.chr6_GL000254v2_alt  1326823 1 +   4827813 T
s panTro5.chr6             30197715 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30427597 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      82454 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74790697 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30585312 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     136366 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     242623 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29343840 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      41882 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      86120 1223 -   1829203 I
e macFas5.chr4             29953516 19 - 170955103 I

a score=475267.000000
s hg38.chr6_GL000254v2_alt  1326824 110 +   4827813 GGTTTTTAAATAATGCATGTAT---ATTTATTATTT-GGTTTGTTGTAGTAAGCCATCTGGAATCAACTGTGG-------------AAATAAATGAATGGTTCTCTATTAAATAActgctgagacca
s panTro5.chr6             30197716 110 + 175400573 GGTTTTTAAATAATGCATGTAT---ATTTATTATTT-GGTTTGTTGTAGTAAGCCATCTGGAATCAACTGTGG-------------AAATAAATGAATGGTTCTCTATTAAATAActgctgagacca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30427598 110 + 173848474 GGTTTTTAAATAATGCATGTAT---ATTTATTATTT-GGTTTGTTGTAGTAAGCCATCTGGAATCAACTGTGG-------------AAATAAATGAATGGTTCTCTATTAAATAActgctgagacca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      82455 110 +   2037526 GGTTTTTAAATAATGCAGGTAT---ATTTATTATTT-GGTTTGTTGTAGTAAGCCATCTGGAATCAACTGTGG-------------AAATAAATGAATGGTTCTCTATTAAATAActgctgagacca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74790698 123 + 122973662 GGTTTATAAATAATTCATGTAT---ATTTATTATTT-GGTTTGTTGCAGTAAGCCATCTGGAATCAATTGTGGAATGAAGTTCAGTAAATAAATGTGTGGTTCTCTATTAAATAACTGCTAAGAcca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30585313 124 + 172585720 GGTTTTTAAATAATTCATGTAT---ATTTATTAATTAGGTTTATTGCAGTAAGCTACCTGGAATCAATTGTGGAATGAAGATCGGTAAATAAATGTGTGGTTCTCTATTAAATAACTGCTAAGACCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29953535 127 - 170955103 GGTTTTTAAATAATTCATGTATTTGGTTTATTATTTAGAGTTGTTGCAGTAAGCCATCTGGAATCAACTGTGGAAGGAAGTTCAGTAAGTAAATGTGTAGTTCTCTATTAAACAActgctaaggcca
i macFas5.chr4             I 19 C 0
s macNem1.NW_012012100v1     136367 127 +   1495729 GGTTTTTAAATAATTCATGTATTTGGTTTATTATTTAGAGTTGTTGCAGTAAGCCATCTGGAATCAACTGTGGAAGGAAGTTCAGTAAGTAAATGTGTAGTTCTCTATTAAACAACTGCTAAGGCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     242624 124 -    863181 GGTTTTTAAATAATTCATGTAT---ATTTATTAATTAGGTTTATTGCAGTAAGCTACCTGGAATCAATTGTGGAATGAAGATCGGTAAATAAATGTGTGGTTCTCTATTAAATAACTGCTAAGAcca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29343841 127 -  71996105 GGTTTTTAAATAATTCATGTATTTGGTTTATTATTTAGAGTTGTTGCAGTAAGCCATCTGGAATCAACTGTGGAATGAAGTTCAGTAAATAAATGTGTGGTTCTCTATTAAACAACTGCTAAGAcca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      41883 124 -    735854 GGTTTTTAAATGATTCATGTAT---ATTTATTAATTAGGTTTATTGCAGTAAGCTACCTGGAATCAATTGTGGAATGAAGATCGGTAAATAAATGTGTGGTTCTCTATTAAATAACTGCTAAGAcca
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      86120 1223 -   1829203 I

a score=3630965.000000
s hg38.chr6_GL000254v2_alt  1326934 759 +   4827813 tctgaaaaatgtat--taacccc-aaaaccaatcacttcacactcgtctactgcctcctccccagagccattctctctaggatagtaaatccgacgggccttccagctgggctgcctgctgcatctcatgca--gctgtccatcacccacacaacagg-cagagtgaagctttcgaatgggaattagagcccatcctcaccaccacatcccagagacactccagcctcttccctt----------------------cctctctccatttcctattagcccctcaacacgggg-cccctctggccattctggcctcatctcaccactctcagcccagatcactcatctgcactcgcaccagtctcttgtcactgctcaatcctgtctctgccaccggcccctgctggtact--cccacatgcacttgctccctagggatccacatggctcactcctcatgccattcagt---------tctctgctcaaatgtcccttagtcaagttctcaggaacctc-ttatccaacaaaatatatctcctgccatcctcaccacca--ccaatcttct-aacccgagtatattttctccataacaattatcactgatattagaataa----atttgaaagttgtt-gtctgtaccactaaaacatattatttgaggccaggaccttgtccagccaccacttgtatccctagcatctagaac-ataccagtacagaggaggggcttaacaaat--------aagaggtgaatg-aTGGGTgaatataa-ttggtatgctgcttttgataagcaattttataacatgt
s panTro5.chr6             30197826 759 + 175400573 tctgaaaaatgtat--taacccc-aaaaccaatcacttcacactcgtctactgcctcctccccagagccattctctctaggatagtaaatccgacgggccttccagctgggctgcctgctgcatctcatgca--gctgtccatcacccacacaacagg-cagagtgaacctttcgaatgggaattagagcccatcctcaccaccacatcccagagacactccagcctcttccctt----------------------cctctctccatttcctatcagcccctcaacacgggg-cccctctggccattctggcctcatctcaccactctcagcccagctcactcatctgcactcgcaccagtctcttgtcactgctcaatcctgtctctgccaccggcccctgctggtact--cccacatgcacttgctccccagggatccacatggctcactcctcatgccattcagt---------tctctgctcaaatgtcccttagtcaagttctcaggaacctc-ttatccaacaaaatatatctcctgccatcctcaccacca--ccaatcttct-aacccaagtatattttctccataacaattatcactgatattagaataa----atttgaaagttgtc-gtctgtaccactaaaacatattctttgaggccaggaccttgtccagccaccacttgtatccctagcatctagaac-ataccagtacagaggaggggcttaacaaat--------aagaggtgaatg-aTGGGTGAATATAA-TTGGTATGCTGCTTTTGATAAGCAATTTTATAACATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30427708 759 + 173848474 tctgaaaaatgtat--taacccc-aaaaccaatcacttcacactcgtctactgcctcctccccagagccattctctctaggatagtaaatccgacgggccttccagctgggctgcctgctgcatctcatgca--gctgtccatcacccacacaacagg-cagagtgaacctttcgaatgggaattagagcccatcctcaccaccacatcccagagacactccagcctcttccctt----------------------cctctctccatttcctatcagcccctcaacacgggg-cccctctggccattctggcctcatctcaccactctcagcccagctcactcatctgtactcgcaccagtctcttgtcactgctcaatcctgtctctgccaccggcccctgctggtact--cccacatgcacttgctccccagggatccacatggctcactcctcatgccattcagt---------tctctgctcaaatgtcccttagtcaagttctcagaaacctc-ttatccagcaaaatatatctcctgccatcctcaccacca--ccaatcttct-aacccaagtatattttctccataacaattatcactgatattagaataa----atttgaaagttgtc-gtctgtaccactaaaacatattctttgtggccaggaccttgtccagccaccacttgtatccctagcatctagaac-ataccagtacagaggaggggcttaacaaat--------aagaggtgaatg-aTGGGTGAATATAA-TTGGTATGCTGCTTTTGATAAGCAATTTTATAACATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      82565 757 +   2037526 tctgaaaaatgtat--taaccccaaaaaccaatcacttcacac-------ctgcctcctccccagagccattctctctaggatagtaaatccgacgggccttccagctgggctgcctgctgcatctcatgca--gctgtccatcacccacacaacaggccagagtgaacctttcgaatgggaattagagcccatcctcaccaccacatcccagagacactccagcctcttccctt----------------------cctctctccatttcctattagcccctcaacacggggccccctctggccattctggcctcatctcaccactctcagcccagctcactcatctgcactcgcaccagtctcttgtcactgctcaatcctgtctctgccaccggcccctgctggtact--cccacatgcacttgctccccagggatccacatggctcactcctcatgccattcagt---------tctctgctcaaaagtcccttagtcaagttctcaggaacctctttatccaacaaaatatatctcctgccatcctcaccacca--ccaatcttctaaacccaagtatattttctccataacaattatcactgatattagaataa----atttgaaagttgtt-gtctgtaccactaaaacatattctttgaggccaggaccttgtccagccaccacttgtatccctagcatctagaac-ataccagtacagaggaggggcttaacaaat--------aagaggtgaatg-aTGGGTGAATATAA-TTGGTATGCTGCTTTTGATAAGCAATTTTATAACATGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74790821 768 + 122973662 tctgaaaaatgtat--taacccc-aaatccaatcacttctcactcctctactgcctcctccccagaaccatcctctgtaggataataaaccagaagggccttccagctgggctgcctgctgcctctcatgca--gctgtccatcacccacacaacagg-cagagtcaatctttcaaatgggaattagagcacatcctcaacaccacatcccagagacactccagcctcttccctt----------------------cctctcactctttcctatcagcccctcatcacaggg-cccctctggccattctggtctcatcccaccactctcaacccagctcactcatctccactcacaccagtctcttgtcactgctccatcctgtctctgccactggaccctgctgggact--cccacatgcacctgctccccagggatccacatggctcactcctcatgccattcagctctctgctgtctctgctcaaatgtcccttagtcaagttctcaggaacctc-ttacccaacaaaatatatctcctgccatcctcaccacca--ccaatcttct-aacccaggtatattttctccataacaattatcactggtattagaataa----atttgaaagttgtc-gtctgtgccactgaaacatattctttgaggccaggaccttgtccagtcaccacttgtatccccagcatctagaac-atcccagtacagaggaggggcttgacaaat--------aAGGGGTTAAtg-atgggtgaatataa-ttggtatgctggttttgagaagcaattttataacatgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30585437 749 + 172585720 TCTGAAAACTGTAT--TAACCcc-aaaaccaatcacttcacgctcctctactgcctcctccccagagccatcctctgtaggatagtaaaccagaagggccttccagctgggctgcctgtggcctctcacgca--gctgtccatcacccacacaacagg-c--agtgaacctttcaaatgggaattagagcacatcctcaacaccgcttcccagagatactccagcctcttccctt----------------------cctctcaccatttcctatcagcccctcatcagaggg-tccttctggccattctggcctcatcccaccagcctcagcccagctcactcatctccactcgcaccagtctcttgtcactgcttcatcctgcctctgccactggcccctgctgggact--cccacaggcacctgctccccacggatccacatggctcactcctcatgccatt-agt---------tctctgctcaaatgtcccttggtcaagttttcaggaacctc-ttacccaacaaaatacatctcctgccatcctcaccacca--ccaatcttct-aacccaggtatattttctccataaca----tcactgatattagaataa----atttgaaagttgtc-gtctgtaccactgaaaca---tctttgaggccaggacctcgtccagtctccacttgtatccccagcatctaggac-atcccagtacagaggagggatttgacaaat--------aaggggtgaatg-aTGGGTGAATATAA-TTGGTATGCTGCTTTTGAGAAGCAATTTTATAACATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29953662 759 - 170955103 tctgaaaaatgtat--taacccc-aaatccaatcacttctcactcctctactgcctcccctccagagtcaccctctctaggatagtaaatcagaagggccttccagctgggctgcctgctgcctctcatgca--gctgtccatcacccacacaacagg-cagagtgaacgtttcaaatgggaattagggcacatcctcactaccacgtcccacagacactccagcctcttcccgt----------------------cctctcaccatttcctaacagcccctcatcacaggg-accctctggccattctggcctcagctcacaactgtcagtccagctcacttgtctccactcacacaaacctcttgtcactgctccaacctgtctctgccacgggcccctgctgtgact--cccacatgcacctgctccccggtgatgtacataggtcactcctcacaccattcggg---------tctctgttcaaatgtcccctggccaagttctcaggaacctc-ttacccaataaaatatatctcctgccgtcctcaccaatg--ccagtcttct-aatccagctatattttctccataacaattgccactgatattagcatat----tttttaaagttgtt-gtctgtatcactgagacatgttctttgaggccaggatttcgtgcagtcaccacttgcatccccagcatctagaac-atcccagtacagaggaggggcttgacaaat--------aaggggtgaatg-aTGGGTGAATTCaa-ttgggatgctgtttttgagaagcaatttcataacatgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     136494 759 +   1495729 TCTGAaaaatgtat--taacccc-aaatccaatcacttctcactcctctactgcctcccctccagagtcaccctctctaggatagtaaatcagaagggccttccagctgggctgcctgctgcctctcatgca--gctgtccatcacccacacaacagg-cagagtgaacgtttcaaatgggaattagggcacatcctcactaccacgtcccacagacactccagcctcttccctt----------------------cctctcaccatttcctaacagcccctcatcacaggg-accctctggccattctggcctcagctcacaactgtcagtccagctcacttgtctccactcacacaaacctcttgtcactgctccaacctgtctctgccacgggcccctgctgtgact--cccacatgcacctgctccccggtgatgtacatagctcactcctcacaccattcggg---------tctctgttcaaatgtcccctggccaagttctcaggaacctc-ttacccaataaaatatatctcctgccgtcctcaccaatg--ccagtcttct-aatccagctatattttctccataacaattgccactgatattagcatat----tttttacagttgtt-gtctgtatcactgagacatgttctttgaggccaggatttcgtgcagtcaccacttgcatccccagcatctagaac-atcccagtacagaggaggggcttgacaaat--------aaggggtgaatg-aTGGGTGAATTCaa-ttgggatgctgtttttgagaagcaatttcataacatgt
i macNem1.NW_012012100v1   C 0 I 27
s cerAty1.NW_012002535v1     242748 758 -    863181 tctgaaaaatgtat--taacccc-aaatccaatcacttcacgctcctatactgcctgctccccagagccatcctctgtaggatagtaaaccagaagggcattccagctgggctgcctgtggcctctcacaca--gctgtccattacccacacaacagg-cagagtgaacctttcaaatgggaattagagcacatcctcaacaccacgtcccagagacactccagcctcttccctt----------------------cctctcaccatttcctatcagcccctcatcaccggg-cctctctggccattgtggcctcatcccaccagcctcagcccagctcactcatctccactcgcaccagtctcttgtcactgctccatcctgtctctgccaccagctcctgctgggact--cccacaggcacctgctccccagggatccacctggctcactcctcatgccattcagt---------tctctgctcaaatgtcccttagtcaagttctcaggaacctc-ttatccaacaaaatatatctcctgccatcctcttcacca--ccaatcttct-aatccaggtatattttctccataacaattatcactgacattagaataa----atttggaagttgtc-gtctgtaccactgaaacatattctttgaggccaggacctcgtccagtcaccacttgcatccccagcatctaaaac-atctcagtacagaggagggacttgacaaat--------aaggggtg-atg-atgggtgaatATAA-TTGGTATGCTGCTTTTGAGAAGCAATTTTATAACATGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29343968 761 -  71996105 tctgaaaaatgtat--taacccc-aaatccagtcacttctcactcctctactgcctcctccccagagccaccctgtctaggatagtaaaccagaagggccttccagctgggctgcctgctgcctctcacgcc--actgtccatcacccacacaacagg-cagagtgaacctttcaaatgggaattacagcacatcctcactaccatgtcccagagacactccagcctcttccctt----------------------cctctcatcatttcctaacagcccctcatcacaggg-cccctctggccattctggcctcatctcacaactgtcagcccagctcacttgtctccactcacacaaacctcttgtcactgctccatcctgtctctgccacgggcccttgctgtgact--cccacatacacctgctccccggagacgtacatagctaactcctcacaccattcagg---------tctctgctcaaatgtcccctggccaagttctcaggaaactc-ttacccaacaaaatgtatctcctgccatcctcacctcaatgccagtcttct-aacccaggtatattttctccataacaattgtcactgatattagaataa----tttttaaagttgtt-gtctgtatcactgagacatattctttgaggccaggattttgtgtagtcaccacttgcatccccagcatctagaac-atctcagtacagaggaggggcttgacagat--------aaggggtgaatg-aTGGGTGAATTCaa-ttgggatgcttcttttgagaagcaatttcataacatgt
i chlSab2.chr17            C 0 I 18
s manLeu1.NW_012107142v1      42007 744 -    735854 tctgaaaaatgtat--taacccc-aaatctaatcacttcacagtcctctactgcttcctccccagagccatcctctgtaggatagtaaaccagaagggcattccagctgggctgcctgtggcctctcacaca--gctgtccatcacccacacaacagg-cagagtgaacctttcaaatgggaattagagcacatcctcaacaccacgtctcagagatactccagcctcttccctt----------------------cctctcaccatttcccatcagcccctcatcacaggg-cccttctggccattctggcctcatcccaccagcctcagcccagctcactcatctccactcgcaccagtctcttgtcactgcttcatcctgcctctgccaccagcttctgctgggact--cccacaggcacctgctccccagagatccacatggctcactcctcatgccatt-agt---------tctctgctcaaatgtcccttggtcaagttttcaggaacctc-ttacacaacaaaatacat---ctgccatcctcaccacca--ccgatcttct-aacccaggtacattttctccataaca----tcactgatattagaataa----atttgaaagttgtc-gtctgtaccactgaaaca---tctttgaggccaggaccttgtccagtcaccacttgcatccccagcatctagaac-atcccagtacagaggagggacttgac------------aaGGGGTGAATG-ATGGGTGAATATAA-TTGGTATGCTGCTTTTGAGAAGCAATTTTACAACATGT
i manLeu1.NW_012107142v1   C 0 C 0
s otoGar3.GL873550         17324547 735 -  18854210 TTTAAAAAATGTATACCAACACT-AAATTCAATCTCGTGTCAC---------------------------ACCTCCCTGGGGTAGCAAACAGGAAGGgcctcccagctgggcc-cctgttgactttcataccctgctgtccatcacccatgca--agg-t---gtgatcctttcaaatgcgaatcagaacacatcctccccaccatgtcccaggaacactccagcatcttcccttctcaggcacaaggaaatcccagcccctcacattttcctacaagcccctcatcatgggc-cc----------ttctggcctcatccccccactgtcagcccagctcactcctctccactaac-ccagcctctcatcactgccccatcccatctcag-catctgcccctgctgtgactcccccacatgcagctcctccccagg--tccacatgggtcactcctctcaccatgcagg---------gctctgct-----gtcc------caagtcctctgaaacatc-ttgcccag---------tctcctgccatcctcagaacca--ccgatctcct-agcccaggcatattttctctgtgacaattaccactgatatcagaataattgtttttatttgttgtctgtctgtctcactgaaacacattcttggaggcagggacctactctcatcaccactt-tatctccagcatctagaacgatcacagcacagagtagggcctcagtgaatatgtactgaataagtgaatGAATAAGTCaatataagttggtgctatgctttagaaaagcaatttgacaacatgt
i otoGar3.GL873550         N 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      86120 1223 -   1829203 I

a score=6490.000000
s hg38.chr6_GL000254v2_alt  1327693 2 +   4827813 gt
s panTro5.chr6             30198585 2 + 175400573 GT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30428467 2 + 173848474 GT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      83322 2 +   2037526 GT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74791589 2 + 122973662 gt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30586186 2 + 172585720 GT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29954421 2 - 170955103 at
i macFas5.chr4             C 0 I 10
s cerAty1.NW_012002535v1     243506 2 -    863181 GT
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1      42751 2 -    735854 GT
i manLeu1.NW_012107142v1   C 0 C 0
s otoGar3.GL873550         17325282 2 -  18854210 at
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      86120 1223 -   1829203 I
e chlSab2.chr17            29344729 18 -  71996105 I
e macNem1.NW_012012100v1     137253 27 +   1495729 I

a score=42731.000000
s hg38.chr6_GL000254v2_alt  1327695 18 +   4827813 gtccgaggcgggtggatc
s panTro5.chr6             30198587 18 + 175400573 GTccgaggcgggtggatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30428469 18 + 173848474 GTccgaggcgggtggatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      83324 18 +   2037526 GTccgaggcgggtggatc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74791591 18 + 122973662 gtctgaggcaggtggatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30586188 18 + 172585720 GTccgaggtgggtgcatc
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     243508 18 -    863181 GTCAgaggcgggtgcatc
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1      42753 18 -    735854 GTccgaggcgggtgcatc
i manLeu1.NW_012107142v1   C 0 C 0
s otoGar3.GL873550         17325284  7 -  18854210 -----------gcggatc
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      86120 1223 -   1829203 I
e chlSab2.chr17            29344729 18 -  71996105 I
e macNem1.NW_012012100v1     137253 27 +   1495729 I
e macFas5.chr4             29954423 10 - 170955103 I

a score=128503.000000
s hg38.chr6_GL000254v2_alt  1327713 52 +   4827813 acctgaggtcaggagttcgagaccagcctgaccaacatggtaaaaccccgtc
s panTro5.chr6             30198605 52 + 175400573 acctgaggtcaggagttcgagaccagcctgaccaacatggtaaaaccccgtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30428487 52 + 173848474 acctgaggtcaggagttcgagaccagcctgaccaacatggtaaaaccccgtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      83342 52 +   2037526 acctgaggtcaggagttcgaaaccagcctgaccaacatggtaaaaccccgtc
i gorGor5.CYUI01015528v1   C 0 I 131
s nomLeu3.chr1a            74791609 52 + 122973662 acctgagttcaggagttcgagaccagcctgaccaacatggcgaaaccctgtc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30586206 52 + 172585720 acctgaggtcaggagttcgagaccagcctgatcaacatggtgaaactctgtc
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     243526 52 -    863181 acctgaggtcaggagttcgagaccagcctgatcaacatggtgaaactctgtc
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1      42771 52 -    735854 acctgaggtcaggagttcgagaccagcctgatcaacatggtgaaactctgtc
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17325291  0 -  18854210 C
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      86120 1223 -   1829203 I
e chlSab2.chr17            29344729 18 -  71996105 I
e macNem1.NW_012012100v1     137253 27 +   1495729 I
e macFas5.chr4             29954423 10 - 170955103 I

a score=392446.000000
s hg38.chr6_GL000254v2_alt  1327765 165 +   4827813 ttttctaaaaataaaaaaattagccaggtgtggtggtgcacgccagtaatcctagctactcgggaggctg-agacacaagaatgacttgaccctgggaggtggaggttgcagtgaaccgagattgtgccactgcactccagcctcagtgacagagtgagactccat
s panTro5.chr6             30198657 165 + 175400573 ttttctaaaaataaaaaaattagccaggtgtggtggtgcacgccagtaatcctagctactcgggaggctg-agacacaagaatgacttgaccctgggaggtggaggttgcagtgaaccgagattgtgccactgcactccagcctcagtgacagagtgagactccat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30428539 164 + 173848474 ttttctaaaaat-aaaaaattagccaggtgtggtggtgcacgccagtaatcctagctactcgggaggctg-agacacaagaatgacttgaccctgggaggtggaggttgcagtgaaccgagattgtgccactgcactccagcctcagtgacagagtgagactccat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      83525 166 +   2037526 ttttctaaaaataaaaaaattagccaggtgtggtggtgcacgccagtaatcctagctactcgggaggctgaagccacaagaatgacttgaccctgggaggtggaggttgcagtgaaccgagattgtgccactgcactccagcctcagtgacagagtgagactccat
i gorGor5.CYUI01015528v1   I 131 C 0
s nomLeu3.chr1a            74791661 165 + 122973662 tttcctaaaaataaaaaagtttgccaggtgtggttgtgcacacctgtaatcctagctactccggaggctg-agacacaagaatgacttgaccctgggacgtggaggttgcagtgagccgaggctgtgccactgcactccagcctcagtgaccgagtgagactccat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30586258 165 + 172585720 ttttctaaaaataaaaaaattcaccaggtgtggttgtgcacgcctgtaatcctagctactccggaggctg-agacacaagaatgacttgaccctgggaggtcgaggttgcactgagctgagattttgccactgcactccagcctcagtgacagagtgagactccgt
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     243578 165 -    863181 ttttctaaaaataaaaaaattcgccaggtgtggtggtgcacacctgtaatcccagctattcgggaggctg-agacacaagaatgacttgaccctgggaggtggaggttgtactgagctgagattttgccactgcactccagcctcagtgacagagtgagagtccat
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1      42823 165 -    735854 ttttctaaaaataaaaaaattagccaggtgtggtggtgcacgcctgtaatcccagctacttgggaggctg-agacacaagaatggcttgaccctgggaggtggaggttgcactgagctgagattttgccactgcactccagcctcagtgacagagtgagactccat
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17325291   0 -  18854210 C
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      86120 1223 -   1829203 I
e chlSab2.chr17            29344729  18 -  71996105 I
e macNem1.NW_012012100v1     137253  27 +   1495729 I
e macFas5.chr4             29954423  10 - 170955103 I

a score=37258.000000
s hg38.chr6_GL000254v2_alt  1327930 16 +   4827813 ctcaaaaac-aaagcaa
s panTro5.chr6             30198822 16 + 175400573 ctcaaaaac-aaaacaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30428703 16 + 173848474 ctcaaaaac-aaaacaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      83691 17 +   2037526 ctcaaaaacaaaaacaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74791826 16 + 122973662 ctcaaaaac-aaaacaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30586423 16 + 172585720 ctcaaaaac-aaaacaa
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     243743 16 -    863181 ctcaaaaac-aaaacaa
i cerAty1.NW_012002535v1   C 0 I 1
s manLeu1.NW_012107142v1      42988 16 -    735854 ctcagaaac-aaaacaa
i manLeu1.NW_012107142v1   C 0 C 0
s otoGar3.GL873550         17325291 11 -  18854210 cttaaaaat-ga-----
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      86120 1223 -   1829203 I
e chlSab2.chr17            29344729 18 -  71996105 I
e macNem1.NW_012012100v1     137253 27 +   1495729 I
e macFas5.chr4             29954423 10 - 170955103 I

a score=12135.000000
s hg38.chr6_GL000254v2_alt  1327946 6 +   4827813 aaaaag
s panTro5.chr6             30198838 6 + 175400573 aaaaaG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30428719 6 + 173848474 aaaaaG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      83708 6 +   2037526 aaaaaG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74791842 6 + 122973662 aaaaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30586439 6 + 172585720 aaaaaG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29954433 6 - 170955103 aaaata
i macFas5.chr4             I 10 C 0
s cerAty1.NW_012002535v1     243760 6 -    863181 aaaaaG
i cerAty1.NW_012002535v1   I 1 C 0
s manLeu1.NW_012107142v1      43004 5 -    735854 aaaGA-
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17325302 0 -  18854210 C
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      86120 1223 -   1829203 I
e chlSab2.chr17            29344729 18 -  71996105 I
e macNem1.NW_012012100v1     137253 27 +   1495729 I

a score=26295.000000
s hg38.chr6_GL000254v2_alt  1327952 9 +   4827813 ttcatgcag
s panTro5.chr6             30198844 9 + 175400573 TTCATGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30428725 9 + 173848474 TTCATGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      83714 9 +   2037526 TTCATGCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74791848 9 + 122973662 ttcatgcac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30586445 9 + 172585720 TTTGTGCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29954439 9 - 170955103 ttcataccc
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     243766 9 -    863181 TTCGTGCAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29344747 9 -  71996105 ttcatgccc
i chlSab2.chr17            I 18 C 0
s manLeu1.NW_012107142v1      43009 8 -    735854 -TCGTGCAC
i manLeu1.NW_012107142v1   C 0 C 0
s otoGar3.GL873550         17325302 8 -  18854210 -tcttgccc
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      86120 1223 -   1829203 I
e macNem1.NW_012012100v1     137253 27 +   1495729 I

a score=2758556.000000
s hg38.chr6_GL000254v2_alt  1327961 479 +   4827813 tttgaccaaataatttatatttgagaaatctataattctacaatgaaatgc-aaaatatagaagaatctttaggtataaggatattaatcagatattatttacaataaggaagaagaacttgtaaaagaagagtagctgggtcattttttggaaatagtatacagccaggaaaagtactgtttaagaagagtttatgataacatataaagttgcttattgataataataaaatttg-aaaagcaagattcaaaataactcatacagtgtgaCTGCACT-AAGTCATCCTGCACAGACACCACATGCACAGAAACCAGGGGTGGAAACTCAGGGGGCAGCT-----GCAAAGCACAGCTCCAGGGCCCCTTTTCACT----GACGTCTCTGAGGCTCTGCCAGGCAGAGGTTCAT-CCGGATCCTCCCAGTGGGGACACAGG--TGTTTTCCATCTTTCTGCTTCACTACATTTTTTATATTT-TCTGTAATTGAG
s panTro5.chr6             30198853 479 + 175400573 TTTGACCAAATAATTTATATTTGAGAAATCTATAATTCTACAATGAAATGC-AAAATATAGAAGAATCTTTAGGTATAAGGATATTAATCAGATATTATTTACAATAAGGAAGAAGAACTTGTAAAAGAAGAGTAGCTGGGTCATTTTTTGGAAATAGTATACAGCCAGGAAAAGTACTGTTTAAGAAGAGTTTATGATAACATATAAAGTTGCTTATTGATAATAATAAAGTTTG-AAAAGCAAGATTCAAAATAACTCATACAGTGTGACTGCACT-AAGTCATCCTGCACAGACACCACATGAACAGAAACCAGGGGTGGAAACTCAGGGGGCAGCT-----GCAAAGCACAGCTCCAGGGCCCCTTTTCACT----GACGTCTCTGAGGCTCTGCCAGGCAGAGGTTCAT-CCAGATCCTCCCAGTGGGGACACAGG--TGTTTTCCATCTTTCTGCTTCACTACATTTTTTATATTT-TCTGTAATTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30428734 479 + 173848474 TTTGACCAAATAATTTATATTTGAGAAATCTATAATTCTACAATGAAATGC-AAAATATAGAAGAATCTTTAGGTATAAGGATATTAATCAGATATTATTTACAATAAGGAAGAAGAACTTGTAAAAGAAGAGTAGCTGGGTCATTTTTTGGAAATAGTATACAGCCAGGAAAAGTACTGTTTAAGAAGAGTTTATGATAACATATAAAGTTGCTTATTGATAATAATAAAGTTTG-AAAAGCAAGATTCAAAATAACTCATACAGTGTGACTGCACT-AAGTCATCCTGCACAGACACCACATGAACAGAAACCAGGGGTGGAAACTCAGGGGGCAGCT-----GCAAAGCACAGCTCCAGGGCCCCTTTTCACT----GACGTCTCTGAGGCTCTGCCAGGCAGAGGTTCAT-CCAGATCCTCCCAGTGGGGACACAGG--TGTTTTCCATCTTTCTGCTTCACTACATTTTTTATATTT-TCTGTAATTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      83723 479 +   2037526 TTTGACCAAATAATTTATATTTGAGAAATCTATAATTCTACAATGAAATGCAAAAATATAGAAGAATCTTTAGGTATAAGGATATTAATCAGATATTATTTACAATAAGGAAGAAGAACTTGTAAAAGAAGAGTAGCTGGGTCA-TTTTTGGAAATAGTATACAGCCAGGAAAAGTACTGTTTAAGAAGAGTTTATGATAACATATAAAGTTGCTTATTGATAATAATAAAGTTTG-AAAAGCAAGATTCAAAATAACTCATACAGTGTGACTGCACTAAAGTCATCCTGCACAGACACCACATGAACAGAAACCAGGGGTGGAAACTCA-GGGGCAGCT-----GCAAAGCACAGCTCCAGGGCCCCTTTTCACT----GACGTCTCTGAGGCTCTGCCAGGCAGAGGTTCATACCGGATCCTCCCAGTAGGGACACAGG--TGTTTTCCATCTTTCTGCTTCACTACA-TTTTTATATTT-TCTGTAATTGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74791857 475 + 122973662 tttgaccaagtaattcatatttgagaaatctataattctacaatgaaatcc-aaaatacagaagaatctttgggtataaggatattaataagatattatttacaataag---gaagaacttgcaaaAGAAGAGCAGCTGGGTCATTGTTTGGAAATAGTATACAGCCAGGAAAAGTACTGTTTAAGAAGAGTTTGTGATAACATATAAAGTTGCTTATTGATAATAATAAAGTTTG-AGAAGCAAGATTCAAAATAACTCACAGAGTGTGACTACACT-AAGCAGTCCTGCACAGACACCTCGTGCACAGAAACCAGGGGTGAAAACTCA-GGGGCAGCT-----GCAAAGCACAGCTCCAGGGCCCCTTTTCACT----GATGTCTTTGAGGCTCTGCCAGGCAGTGGTTCAT-CCTAATCCTTCCAGTGGGGACGCAGG--TGTTTTCCATCTTTCTGCTTCTCTTCATTTTTTATGTTT-TCTGTAATTGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30586454 480 + 172585720 TTTGACCAAATAACTTATATTTGAAAAATCTATAATTCTACAATGAAATCC-AAAATATAGAAGAATCTTTAGGTATAAGGATATTAATCAGATGTTATTTACAATAAGGAAGAAGAACTTGCAAAAGAAAAGTAGCTAGGTCATTTTTTGGAAATAGTATACACCCAGGAAAAGTACTGTTTAAGAAGAGTTTGTGATAACATATAAAGTTGCTTATTGATAATAATGAAGTTTGAAAAAGCAAGATTCTGAATAACTCATACAGTGTGACTACACT-AAGTCGTCCTGCACAGACACCACATGCACAGAAACCAGGGATGGAAACTCGGGGGGCAGCT-----GCAAAGCACAGCTCCAGGGCCCCTCTTCACT----GAAGTCTCTGAGGCTCTGCCAGGCAGAGGTTCAT-CCTGATCCTCCCAGTGGGGACACAGG--TGTTTTCCACATTTCTGCTTCTCTACATTTTTTATATTT-TCTGTAATTGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29954448 479 - 170955103 tttgaccagataatttatatttgagaaatctatgattctaaaacaaaatcc-aaaatatagaagaatctttaggtataaggatattaatcagacactatttacaataaggaagaaaaacatgcaaaagaagagtagctaggttgttttttgtaaatagtatacagcaggctaaagtagtatttaagaagagtttgtgataacatataaagttgctcattgataataataatgtttg-aaaagcaagattcaaaataactcacacagtgtgaCTACACT-AAGTCATCCTGCACAGACACCACATGCACAGAAACCAGGGGTGGAAACTCAGGGGGCAGCT-----GCAAAGCACAGCTCCAGGGCACCTGACCACT----GATGTGTCTGAGGCTCTGCCAGGCAAAGATTCAT-CCTGATCCTCCCAGTGGGGACACAGG--TAGTTTCCATCTTTCCACTTCTCTACATTTTTTACATTT-TCTGTAACTGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     137280 479 +   1495729 tttgaccagataatttatatttgagaaatctatgattctaaaacaaaatcc-aaaatatagaagaatctttaggtataaggatattaatcagacactatttacaataaggaagaaaaacatgcaaaagaagagtagctaggttgttttttgtaaatagtatacagcaggctaaagtagtatttaagaagagtttgtgataacatataaagttgctcattgataataataatgtttg-aaaagcaagattcaaaataactcacacagtgtgaCTACACT-AAGTCGTCCTGCACAGACACCACATGCACAGAAACCAGGGGTGGAAACTCAGGGGGCAGCT-----GCAAAGCACAGCTCCAGGGCACCTGACCACT----GATGTGTCTGAGGCTCTGCCAGGCAAAGATTCAT-CCTGATCCTCCCAGTGGGGACACAGG--TAGTTTCCATCTTTCCACTTCTCTACATTTTTTACATTT-TCTGTAACTGAG
i macNem1.NW_012012100v1   I 27 C 0
s cerAty1.NW_012002535v1     243775 485 -    863181 TTTGACCAAATAACTTATATTTGAGAAATCTATAATTCTACAATGAAATCC-AAAATATAGAAGAATCTTTAGGTATAAGGATATTAATCAGATATTATTTACAATAAGGAAGAAGAACTTGCAAAAGAAAAGTAGCTAGGTCATTTTTTGGAAATAGTTCACAGCCAGGAAAAGTACTGTTTAAGAAGAGTTTGTGATAACATATAAAGTTGCTTATTGATAATAATGAAGTTTGAAAAAGCAAGATTCAAAATAACTCATACAGTGTGACTACACT-AAGTCGTCCTGCACAGACACCACATGCACAGAAACCAGGGATGGAAACTCAGGGGGTAGCTGCAAAGCAAAGCACAGCTCCAGGGCCCCTTTTCACC----GAAGTCTTTGAGGCTCTGCCAGGCAGAGGTTCAT-CCTGATCCTCCCAGTGGGGACACAGG--TGTTTTCCACATTTCTGCTTCTCTACATTTTTTACATTT-TCTGTAATTGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29344756 479 -  71996105 tttgaccatataatttatatttgagaaatctatgattccaaaacaaaatcc-aaaatatagaagaatctttaggtataaggatattaatcagatattatttacaataaggaagaaaaacatgcaaaagaagagtagctaggtttttttttgtaaatactatacagctggccaaagtagtgtttaagaagagtttgtgataacatataaacttgctcattgataataataaagtttg-aaaatctagattcaaaataactcatacagtgtgaCTACACT-AAGTCGTCCTGCACAGACACCACATGCACAGAAACCAGGGGTGGAAACTCTGGGGGCGGCT-----GCAAAGCACAGCTCCAGGGCCTCTGATCACT----GATGTTTCTGAGGCTCTGCCAGGCAAAGATTCAT-CCTGGTCCTCCCAGTGGGGACGTAAG--TAGTTTCCATCTTTCTGCTTCTCTACATTTTTTACATTT-TCTGTAATTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      43017 476 -    735854 TTTGACCAAATAACTTATATTTGAGAAATCTATAATTCTACAATGAAATCC-AAAATATAGAAGAATCTTTAGGTATAAGGATATTAATCAGATATTATTTACAAT----AAGAAGAACTTGCAAAAGAAAAGTAGCTAGGTCATTTTTTGGAAATAGTATACAACCAGGAAAAGTACTGTTTAAGAAGAGTTTGTGATAACATATAAAGTTGCTTATTGATAATAATGAAGTTTGAAAAAGCGAGATTCAGAATAACTCATACAGTGTGACTACACT-AAGTCGTCCTGCACAGACACCACAAGCACAGAAACCAGGGATGGAAACTCAGGGGGCGACT-----GCAAAGCACAGCTCCAGGGCCCCTCTTCACT----GAAGTCTTTGAGGCTGTGCCAGGCAGAGGTTCAT-CCTGATTCCCCCAGTGGGGACACAGG--TGTTTTCCACATTTCTGCTTCTCTACATTTTTTATATTT-TCTGTAATTGAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      87343 478 -   1829203 tttgaccatataatttatatttgagaaatctatgattccaaaacaaaatcc-aaaatatagaagaatctttaggtataaggatattaatcagatattatttacaataaggaagaaaaacaTGCAAAAGAAGAGTAGCTAGGT-ATTTTTTGTAAATAGTATACAGCTGGCCAAAGCAGTGTTTAAGAAGAGTTTGTGATAACATATAAAGTTGCTTATTGATAATAATAAAGTTTG-AAAATCTAGATTCAAAATAACTCATACAGTGTGACTACACT-AAGTCATCCTGCACAGACACCACATGCACAGAAACCAGGGGTGGAAACTCTGGGGGAGGCT-----GCAAAGCACAGCTCCAGGGCCCCTGACCACT----GATGTCTCTGAGGCTCTGCCAGGCAAAGATTCGT-CCTGGTCCTCCCAGTGGGGACACAGG--TAGTTTCCATCTTTCTGCTTCTCTATATTTTTTACATTT-TCTGTAAATGAG
i colAng1.NW_012115577v1   I 1223 C 0
s otoGar3.GL873550         17325310 448 -  18854210 tttgacatagtaatttctacttgagaaatctatgatttgacaagaaaatct-aaaattcagaaagatctttaggtat-aggatattacccagtcattatttacaacaataaaaaaGGTC-CACAAAAGAAAAGTGGC----CCTCAGTTTGGAAATAGCACACAGCGGGGACAAGCAGTGATTCAGAAGAGTCTGGAATGTCATATGCAGTTGTTTATTGATGATAACGC--TTTT-GAGAACAAGATTCCAAACACACCATACAGCCCAACTGCACT-GAGCAGCCCTGCGCAGAC---------ACAGAAACC----------------GGGGCGGCT-----GT-AAGCGCAGCTCCAGGGCCCCTTCCCACTGGGGGGGGTCTATGGGGAGCTGCAGGGCGGGG---TAA-CCATGTCCTCCCAGCGGAGACAGTGGATGGTTTTCCCTCTTTCTGCTTCTCTGCA-TTTTTATACTTATTTATAATTGAA
i otoGar3.GL873550         C 0 I 4191
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I

a score=619849.000000
s hg38.chr6_GL000254v2_alt  1328440  99 +   4827813 CAGATTCTACTTTCTAAAAGGGTAAAATGCTGAT-TATG---AAGTTTTACAACATTTGAAATACAATTTTAATGAAAAAGTCCAAATGTCCTGTCCCAACTC
s panTro5.chr6             30199332  99 + 175400573 CAGATTCTACTTTCTAAAAGGGTAAAATGCTGAT-TATG---AAGTTTTACAACATTTGAAATACAATTTTAATGAAAAAGTCCAAATGTCCTATCCCAACTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30429213  99 + 173848474 CAGATTCTACTTTCTAAAAGGGTAAAATGCTGAT-TATG---AAGTTTCACAACATTTGAAATACAATTTTAATGAAAAAGTCCAAATGTCCTATCCCAACTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      84202 100 +   2037526 CAGATTCTACTTTCTAAAAGGGTAAAATGCTGAT-TATG--AAAGTTTTACAACATTTGAAATACAATTTTAATGAAAAAGTCCAAATGTCCTATCCCAACTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74792332  99 + 122973662 CAGATTCTACTTTCTAAAAGGATAAAATACTGAT-TATG---AAGTTTTACAACATATGAAATACAATTTTAATGAAAAAGTCCAAATGTCCTGTCCCAACAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30586934  99 + 172585720 CAGATTCTGCTTTCTAAAAGGATAAAATGCTGAT-TATG---AAGTTTTACAACATTTGAAATACAATTTTAATAAAAAATTCCAAATGTCCTGTCCCAATTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29954927  99 - 170955103 CAGATTCTACTTTCTAAAAGGATAAAATACTGAT-TATG---AAGTTTGACAACATTTGAAATACAATTTTAATGAAAAAGTCCAAATGTCCTGTCCCAACTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     137759  99 +   1495729 CAGATTCTACTTTCTAAAAGGATAAAATACTGAT-TATG---AAGTTTGACAACATTTGAAATACAATTTTAATGAAAAAGTCCAAATGTCCTCTCCCAACTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     244260  99 -    863181 CAGATTCCACTTCCTAAAAGGATAAAATGCTGAT-TATG---AAGTTTTACAACATTTGAAATACAATTTTAATGAAAAAGTCCAAATGTCCTGTCCCAAGTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29345235  99 -  71996105 TAGATTCTACTTTCTAAAAGGATAAAATACTGAT-TATG---AAGTTTGACAACATTTGAAATACAATTTTAATGAAGAAGTCCAAATGTCCTGTCCCAACTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      43493  99 -    735854 CAGATTCCACTTCCTAAAAGGATAAAATGCTGAT-TATG---AAGTTTTACAACATTTGAAATACAATTTTAATGAAAAAGTCCAAATGTCCTGTCCCAAGTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      87821  99 -   1829203 TAGATTCTACTTTCTAAAAGGATAAAATACTGAC-TATG---AAGTTTTACAACATTTGAAATACAATTTTAATGAAAAAGTCCAAATGTCCTCTCCCAACTC
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550         17329949 103 -  18854210 CAGCTTTTTCTTTTTAATAGGATAGAATCCATACATACGTCAAAGTTTTAAAACATTTGAAGTGAAATTTTGATGAAAAAGTCCAAATATCCTGTCCCAGCTC
i otoGar3.GL873550         I 4191 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I

a score=630822.000000
s hg38.chr6_GL000254v2_alt  1328539 133 +   4827813 AGGTCACtttct-ctt-tttttagagatagggacttgctctctcacccaggttgtagtgcagtgagttgatcatagttcactgccgccttgagctcctgggttcaagtgatcctgctgcctcagtctccagagta
s panTro5.chr6             30199431 133 + 175400573 AGGTCACtttct-ctt-tttttagagatagggacttgctctctcacccaggttgtagtacagtgagttgatcatagttcactgccgccttgagctcctgggttcaagtgatcctgctgcctcagtctccagagta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30429312 133 + 173848474 AGGTCACtttct-ctt-tttttagagatagggacttgctctctcacccaggttgtagtacagtgagttgatcatagttcactgccgccttgagctcctgggttcaagtgatcctgctgcctcagtctccagagta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      84302 132 +   2037526 AGGTCACtttct-ctt-tttttagagatagggacttgctctctcacccaggttgtagtgcagtgagttgatcatagttcactgccgccttgagctcct-ggttcaagtgatcctgctgcctcagtctccagagta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74792431 133 + 122973662 AGGTCACtttct-ctt-tttctagagatagagacttgctctatcacccaggctgaagtgcagtgagttgatcatagttcactgccgccttgagctcctgggctcacgtgattctactgcctcagtctccagagta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30587033 127 + 172585720 AGGTCACtttct-ttt-tttttagagataaggacttgctctgccacccaggctggagtgcagtgagttgatcatagttcactgctgtcttgagctcccaggctcaagtga------agaatcagtctccagagta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29955026 133 - 170955103 AGGTCACtttctcttc-tttttaaagatagggacttgctctgtcacccagtttggagtgcagtga-tcgatcatagttcactgccacctcaaactcctgggctcaagtggttctgctgcctcagcctcttgagta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     137858 133 +   1495729 TGGTCACtttctcttc-tttttaaagatagggacttgctctgtcacccagtttggagtacagtga-tcgatcatagttcactgccacctcaaactcctgggctcaagtggttctgctgcctcagcctcttgagta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     244359 127 -    863181 AGGTCACtttct-ttt-ttgttagagatagggacttgctctgccacccaggctagagtgcagtgagttgatcatagttcactgctgtcttgagctcctgggctcaagtga------agaatcagtctccagagta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29345334 133 -  71996105 AGGTCACtttct-tttctttttaaagatagggacttgctctgtcacccaggttggagtgcagtgagtcgatcatagttcactgc-acctcaatctcctgggctcaagtggttctgctgcctcagcctcctgagta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      43592 127 -    735854 AGGTCACtttct-ttt-tttttagagatagggacttgctctgccacccaggctggagcgcagtgagttgatcatagttcattgctgttttgagctcctgggctcaagtga------agaatcagtctccagagta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      87920 134 -   1829203 AGGTCACtttcttttc-tttttaaagatagggacttgctctgtcacccaggttggagtgcagtgagtcgatcatagttcactgccacctcaaactcctgggctcaagtggttctgctgcctcagcctccttagta
i colAng1.NW_012115577v1   C 0 I 70
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17330052   0 -  18854210 C
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I

a score=207610.000000
s hg38.chr6_GL000254v2_alt  1328672 71 +   4827813 gccaagactacaggaaagccccaaaatgaccatctaatttaaaaaaaaaaa-ttgaacagaatacatctcac
s panTro5.chr6             30199564 72 + 175400573 gccaagactacaggaaagccccaaaatgaccatctaatttaaaaaaaaaaaattgaacagaatacatctcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30429445 70 + 173848474 gccaagactacaggaaagccccaaaatgaccatctaatttaaaaaaaaaa--ttgaacagaatacatcttac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      84434 70 +   2037526 gccaagactacaggaaagccccaaaatgaccatctaatttaaaaaaaaaa--ttgaacagaatacatctcac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74792564 70 + 122973662 gacaagactacaggaaaacaccaaaatgaccatctaattaaaaaaaaaat--ttgaacagaatacatctcac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30587160 69 + 172585720 gccaagactacaagaaagaaccaaaattaccatcta--attaaaaaaaaaa-ttgaacagaatatatctcac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29955159 71 - 170955103 gtaaggactactggaaagcaccactatgcccgtatatttttaaaatttatt-ttgtatagaagacatctcac
i macFas5.chr4             C 0 I 2
s macNem1.NW_012012100v1     137991 71 +   1495729 gtaaggactactggaaagcaccactatgcccgtatatttttaaaatttatt-ttgtatagaagacatctcac
i macNem1.NW_012012100v1   C 0 I 2
s cerAty1.NW_012002535v1     244486 67 -    863181 gccaagactacaggaaagcaccaaaattatcaccta--attaaaa--aaaa-ttgaacagaatacatcttac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29345467 71 -  71996105 gtaaggactactgaaaagcaccactatgctcatctatttttaaaacttatt-ttgtatagaagacgtctcac
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012107142v1      43719 67 -    735854 gccaagactacaagaaagcaccaaaattaccatctaatttaaaaaa----a-ttgaacagaatacatctcac
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17330052  0 -  18854210 C
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      88054 70 -   1829203 I

a score=258875.000000
s hg38.chr6_GL000254v2_alt  1328743 47 +   4827813 tgcttccca-ggctggtcttgaactcctgggctcaagtgatcctcctg
s panTro5.chr6             30199636 47 + 175400573 tgcttccca-ggctggtcttgaactcctgggctcaagtgatcctcctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30429515 47 + 173848474 tgcttccca-ggctggtcttgaactcctgggctcaagtgatcctcctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      84504 48 +   2037526 tgcttcccagggctggtcttgaactcctgggctcaagtgatcctcctg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74792634 47 + 122973662 tgtttccca-ggctgttcttgaactcctgggatcaagtgatcctcctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30587229 47 + 172585720 tgtttccta-ggctggccttgaactcctgggctcaagtgatcttcctc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29955232 47 - 170955103 tgtttccca-ggctgatcttgaactcccgggctcaagtgatcctcctg
i macFas5.chr4             I 2 C 0
s macNem1.NW_012012100v1     138064 47 +   1495729 tgtttccca-ggctgatcttgaactcctgggctcaagtgatcctcctg
i macNem1.NW_012012100v1   I 2 C 0
s cerAty1.NW_012002535v1     244553 47 -    863181 tgtttccta-gcctggtcttgaactcctgggctcaaatgatcctcctc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29345540 47 -  71996105 tgtttccca-ggctgatcttgaactcctgggctcaagtgatcctcctg
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012107142v1      43786 47 -    735854 tgtctccta-ggctggtcttgaactcctgagctcaagcgatcctcctc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      88124 47 -   1829203 tgtttccca-ggctgatcttgaactcctgggctcaagtgatcctcctg
i colAng1.NW_012115577v1   I 70 I 1164
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17330052  0 -  18854210 C
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I

a score=268056.000000
s hg38.chr6_GL000254v2_alt  1328790 60 +   4827813 ccttagcctccccagtgttctaggataacatgggtgagccactgtgctcagtcCTAACTT
s panTro5.chr6             30199683 60 + 175400573 ccttagcctccccagtgttctaggatgacatgggtgagccactgtgctcagtcCTAACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30429562 60 + 173848474 ccttagcctccccagtgttctaggatgacatgggtgagccactgtgctcagtcCTAACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      84552 60 +   2037526 ccttagcctccccagtgttctaggatgacatgggtgagccactgtgctcagtcCTAACTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74792681 60 + 122973662 tcttagcctccccagtgttctaggatgacatgggtgagccattatgctcagtcCTAACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30587276 60 + 172585720 ctttaggctccccaatgttctaggatgacctgggtgagccactgtgctcagtcCTAACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29955279 60 - 170955103 ccttgacctctccagtgttctaggatgacacgcatgagccactgtgcccagtcCTAACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     138111 60 +   1495729 ccttgacctctccagtgttctaggatgacacgcatgagccactgtgcccagtcCTAACTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     244600 60 -    863181 ctttaggctccccaatgttctaggatgacatgggtgagccactgtgctcagtcCTAACTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29345587 60 -  71996105 ccttggcctctccagtgttctaggatgacacgcatgcgccactgggcccagtcCTAACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      43833 60 -    735854 ctttaggctccccaatgttctaggatgacatgggttagccactgtgctcagtcCTAACTT
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17330052  0 -  18854210 C
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      88171 1164 -   1829203 I

a score=353748.000000
s hg38.chr6_GL000254v2_alt  1328850 82 +   4827813 AGCTTGAAGCAAAGTCTCCTCTCCA------TGTCATAGGGC-AAAAACTCCAGCTGATGGAGCCTTCAGAAAGAAGAAATAAACTCTT
s panTro5.chr6             30199743 82 + 175400573 AGCTTGAAGCAAAGTCTCCTCTCCA------TGTCATAGGGC-AAAAACTCCAGCTGATGGAGCCTTCAGAAAGAAGAAATAAACTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30429622 82 + 173848474 AGCTTGAAGCAAAGTCTCCTCTCCA------TGTCATAGGGC-AAAAACTCCAGCTGATGGAGCCTTCAGAAAGAAGAAATAAACTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      84612 83 +   2037526 AGCTTGAAGCAAAGTCTCCTCTCCA------TGTCATAGGGCAAAAAACTCCAGCTGATGGAGCCTTCAGAAAGAAGAAATAAACTCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74792741 82 + 122973662 AGCTTGAAGCAAAGTCTCCTCTCAA------CATCACAGGAC-AAAATCTCCAGCTGATGGAGACTTCGGAAAGAAGAAATAAACTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30587336 82 + 172585720 ACCTTGAAGCAAAGTCTCCTCGAAA------CATCACAGCAC-AAAAACTCCAGCTGATGGAGCCTTCAGAAAGAAGAAATAAACTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29955339 82 - 170955103 AGCTTCAAGCAACTTCTCCTGTCAA------CTTCACAGGGC-ACAATCTCCAGCTGATGGAGACTTCAGAAAGAAGAAATAAACTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     138171 82 +   1495729 AGCTTCAAGCAACTTCTCCTGTCAA------CTTCACAGGGC-ACAATCTCCAGCTGATGGAGACTTCAGAAAGAAGAAATAAACTCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     244660 82 -    863181 ACCTTGAAGCAAAGTCTCCTCGCAA------CATCACAGCAC-AAAAACTCCAGCTGACGGAGCCTTCAGAAAGAAGAAATAAACTCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29345647 82 -  71996105 AACTTCAAGCAGCTTCTCCTGTCAA------CTTCACAGGGC-ACAATCTCCAGTTGATGGAGACTTCAGAAAGAAGAAATAAACTCTT
i chlSab2.chr17            C 0 I 35
s manLeu1.NW_012107142v1      43893 82 -    735854 ACCTTGAAGCAAAGTCTCCTCACAA------CATCACAGCAC-AAAAACTCCAGCTGACAGAGCCTTCAGAAAGAAGAAATAAACCCTT
i manLeu1.NW_012107142v1   C 0 C 0
s otoGar3.GL873550         17330052 88 -  18854210 AACTTGAAGCGAACTGTCTTCTCTAGATGGGGGTTGGGGGGC-AGAAATTCCTCTCGTGGGCTCCTTGGGGAGGAGGAAATGACCCCTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      88171 1164 -   1829203 I

a score=9185.000000
s hg38.chr6_GL000254v2_alt  1328932 3 +   4827813 -CCT
s panTro5.chr6             30199825 3 + 175400573 -CCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30429704 3 + 173848474 -TCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      84695 3 +   2037526 -CCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74792823 3 + 122973662 -CCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30587418 3 + 172585720 -CCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29955421 3 - 170955103 -CCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     138253 3 +   1495729 -CCT
i macNem1.NW_012012100v1   C 0 I 33
s cerAty1.NW_012002535v1     244742 3 -    863181 -CCT
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1      43975 3 -    735854 -CCT
i manLeu1.NW_012107142v1   C 0 C 0
s otoGar3.GL873550         17330140 3 -  18854210 TCC-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      88171 1164 -   1829203 I
e chlSab2.chr17            29345729 35 -  71996105 I

a score=7821.000000
s hg38.chr6_GL000254v2_alt  1328935 2 +   4827813 CC
s panTro5.chr6             30199828 2 + 175400573 CC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30429707 2 + 173848474 CC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      84698 2 +   2037526 CC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74792826 2 + 122973662 CC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30587421 2 + 172585720 CC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29955424 2 - 170955103 TC
i macFas5.chr4             C 0 I 701
s cerAty1.NW_012002535v1     244745 2 -    863181 CC
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1      43978 2 -    735854 CC
i manLeu1.NW_012107142v1   C 0 C 0
s otoGar3.GL873550         17330143 2 -  18854210 CC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      88171 1164 -   1829203 I
e chlSab2.chr17            29345729 35 -  71996105 I
e macNem1.NW_012012100v1     138256 33 +   1495729 I

a score=213499.000000
s hg38.chr6_GL000254v2_alt  1328937 100 +   4827813 ACAATGCCTCATCCATCCCTGGGTTATAGGCGTCGGCTGAATGATAAAGTCAACACTGAGAATATGATCATTTTAGATTACTGATTGTCATTTAATTTTA
s panTro5.chr6             30199830 100 + 175400573 ACAATGCCTCATCCATCCCTGGGTTATAGGCGTCGGCTGAATGATAAAGTCAACATTGAGAATATGATCATTTTAGATTACTGATTATCATTTAATTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30429709 100 + 173848474 ACAATGCCTCATCCATCCCTGGGTTATAGGCGTCGGCTGAATGATAAAGTCAACACTGAGAATATGATCATTTTAGATTACTGATTGTCATTTAATTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      84700 100 +   2037526 ACAATGCCTCATCCATCCCTGGGTTATAGGCGTCGGCTGAATGATAAAGTCAACACTGAGAATATGATCATTTTAGATTACTGATTGTCATTTAATTTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74792828  99 + 122973662 ACAATGCCTGATCCATCCCTGGGTTATAGGCATCGGCTGAATGATAAAGTCAACACTGAGAACATGATCATTTT-GATTACTGATTGTCATTTAATTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30587423 100 + 172585720 ACAATGCCTGATCCATCCCTGGGTTATAGGCATCGGCTGAATAATAAAGTCAACACTGAGAATATGACCATTTTAGATTATCGATTGTCATTTAATTTTA
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     244747  74 -    863181 ACAATGCCTGATCCATCCCT-GGTTAT----ATTGGCTGAATGATAAAGTCAACACTGAGAATATGATCATTTTCGATT---------------------
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1      43980 100 -    735854 ACAACGCCTGATCCATCCCTGGGTTATAGGCATCGGCTCAATGATAAAGTCAACACTGAGAATATGACCATTTTAGATTACCGATTGTCATTTAATTTTA
i manLeu1.NW_012107142v1   C 0 C 0
s otoGar3.GL873550         17330145  65 -  18854210 -CAGTGGCTGATCTGACCCT-GGATACAGACCCCAGCTGAGCAGTAA---------------------------------CCTGCTCTCATATCATCCTA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1      43311 325 -    383796 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      88171 1164 -   1829203 I
e chlSab2.chr17            29345729  35 -  71996105 I
e macNem1.NW_012012100v1     138256  33 +   1495729 I
e macFas5.chr4             29955426 701 - 170955103 I

a score=393522.000000
s hg38.chr6_GL000254v2_alt  1329037 131 +   4827813 ATTCCACCACACCTGAGAGAGTGGGATGGATTCTTTCTTTTATTATGATTTGAGCATCTGAGTCCCTTCCATCCTGAACATCTGACATGGGTGCTTC-AAAAATGTAGGTCTTGAGACTTAAAGGGCACTTG----
s panTro5.chr6             30199930 131 + 175400573 ATTCCACCACACCTGAGAGAGTGGGATGGATTCTTTCTTTTATTATGATTTGAGCATCTGAGTCCCTTCCATCCTGAACATCTGACATGGGTGCTTC-AAAAATGTAGGTCTTGAGACTTAAAGGGCACTTG----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30429809 131 + 173848474 ATTCCACCACACCTGAGAGAGTGGGATGGATTCTTTCTTTTATTATGATTTGAGCATCTGAGTCCCTTCCATCCTGAACATCTGACATGGGTGCTTC-AAAAATGTAGGTCTTGAGACTTAAAGGGCACTTG----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      84800 132 +   2037526 ATTCCACCACACCTGAGAGAGTGGGATGGATTCTTTCTTTTATTATGATTTGAGCATCTGAGTCCCTTCCATCCTGAACATCTGACATGGGTGCTTCAAAAAATGTAGGTCTTGAGACTTAAAGGGCACTTG----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74792927 131 + 122973662 ATTCCACCACACCTGAGAGAGTGGGATGGATTCTTTCTTTTATTGTGATTTGAGCATCTGAGTCCCTTCCATCCTGAACATCTGACATGGGTGCTTC-AAAAATGTAGGCCTTGAGACTTAAAGGGCACTTG----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30587523 131 + 172585720 ATTCCACCACACCTGACAGAGTGGGATGGATTCTTTCTTTTATTATGTTTTGAGCATCTGAGTCCCTTCCATCCTGAACATCTGACATGGGTGCTTC-AAAAATGTAGACCTTGAGACTTAAAGGGCACTCG----
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     244821 106 -    863181 -------------------------ACGGATTCTATCTTTTATTATGATTTGAGCATCCGAGTCCCTTCCATCCTGAACATCTGACATGGGTGCTTC-AAAAATGTAGGACTTGAGACTTAAAGGGCACTCG----
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1      44080 131 -    735854 ATTCCACCACACCTGACAGAGTGGGATGGATTCTTTCTTTTATTATGTTTTGAGCATCTGCGTCCCTTCCATCCTGAACATCTGACATGGGTGCTTC-AAAAATGTAGACCTTGAGACTTAAAGGGCACTCG----
i manLeu1.NW_012107142v1   C 0 C 0
s aotNan1.NW_018496904v1      43636 126 -    383796 ATTCCACCACATCAGAGAGAGTGGGATGGATTCTTTCATTTTTTATGATTGTAGCATCAGAGATTCTGCAATCCTGAATACTTGACATGGATTCTCC-A-----GTAGGTCTTGAGACATAAAGGTCACTCG----
i aotNan1.NW_018496904v1   I 325 I 76886
s otoGar3.GL873550         17330210 125 -  18854210 ATGTCACCTCACCTGAGAGAGTGGGATGGATTGTCTCATTT-TCATGGT----GTATCTCAGTCTCTGAGATTCTGAATCCCTAACATGGCTTTTCC-AGACATCTTGGC-----AACTTAGAGGGCATCTACTGG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      88171 1164 -   1829203 I
e chlSab2.chr17            29345729  35 -  71996105 I
e macNem1.NW_012012100v1     138256  33 +   1495729 I
e macFas5.chr4             29955426 701 - 170955103 I

a score=69976.000000
s hg38.chr6_GL000254v2_alt  1329168 23 +   4827813 GTCTCCTGAGCAGGCCCC-CTGCA--
s panTro5.chr6             30200061 23 + 175400573 GTCTCCTGAGCAGGCCCC-CTGCA--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30429940 23 + 173848474 GTCTCCTGAGCAGGCTCC-CTGCA--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      84932 23 +   2037526 GTCTCCTGAGCAGGCCCC-CTGCA--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74793058 23 + 122973662 GTCTCCTGAGCAGGCCCC-CTGCA--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30587654 23 + 172585720 GTTTCCTGAGCAGGCCCC-CTGCA--
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     244927 23 -    863181 GTCTCCTGAGCAGGCCCC-CTGCA--
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1      44211 23 -    735854 GTCTCCTGAGCAGGTCCC-CTGCA--
i manLeu1.NW_012107142v1   C 0 C 0
s aotNan1.NW_018496904v1     120648 24 -    383796 GTCTCCTAAGCAGGCCCCGCTGCA--
i aotNan1.NW_018496904v1   I 76886 C 0
s otoGar3.GL873550         17330335 23 -  18854210 GTCTC--AGTGAAGCCCA-CTGAGCA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     551828 2173 -   1771730 I
e colAng1.NW_012115577v1      88171 1164 -   1829203 I
e chlSab2.chr17            29345729 35 -  71996105 I
e macNem1.NW_012012100v1     138256 33 +   1495729 I
e macFas5.chr4             29955426 701 - 170955103 I

a score=786570.000000
s hg38.chr6_GL000254v2_alt  1329191 210 +   4827813 TGCGCCACACCCACTAAGGCTCCATAACAGTGGGAAGAGCAGCCACAGTCAGAGCCCAGGTGGGTTCACACTGAGGGACCATCCACATCCAGGGT--ACGCTGAGGAGGGGCTGAGGTGAGAATCCAGCCCCTG-CC-TAGGCTCTGGGTGAGAGGTGGGCAGGACAGTCAGCTACTGAGTAT-----------TACTGGAGCTATTGCCTTTTTTCTCCTGAAG
s panTro5.chr6             30200084 210 + 175400573 TGCGCCATACCCACTAAGGCTCCATAACAGTGGGAAGAGCAGCCACAGTCAGAGCCCAGGTGGGTTCACACTGAGGGACCATCCACATCCAGGGT--ACGCTGAGGAGGGGCTGAGGTGAGAATCCAGCCCCTG-CC-TAGGCTCTGGGTGAGAGGTGGGCAGGACAGTCAGCTACTGAGTAT-----------TACTGGAGCTATTGCCTTTTTTCTCCTGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30429963 210 + 173848474 TGCACCACACCCACTAAGGCTCCATAACAGTGGGAAGAGCAGCCACAGTCAGAGCCCAGGTGGGTTCACACTGAGGGACCATCCACATCCAGGGT--ACGCTGAGGAGGGGCTGAGGTGAGAATCCAGCCCCTG-CC-TAGGCTCTGGGTGAGAGGTGGGCAGGACAGTCAGCTACTGAGTAT-----------TACTGGAGCTATTGCCTTTTTTCTCCTGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      84955 210 +   2037526 TGTGCCACACCCACTAAGGCTCCATAACAGTGGGAAGAGCAGCCACAGTCAGAGCCCAGGTGGGTTCACACTGAGGGACCATCCACATCCAGGGT--ACGCTGAGGAGGGGCTGAGGTGAGAATCCAGCCCCTG-CC-TAGGCTCTGGGTGAGAGGTGGGCAGGACAGTCAGCTACTGAGTAT-----------TACTGGAGCTATTGCCTTTTTTCTCCTGAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74793081 210 + 122973662 TGTGCCACACCCACTAAGGCTCCATAACAGTGGGAAGAGCAGCCAGGGTCAGAGCCCAGGTGGGTTCACACTGAGGGACCATCCACATCCAGGAT--ACGCTGAGGAGGGGCTGAGGTGAGAGTCCAGCCCTTG-CC-TAGGCTGTGGGTGGCAGGTGGGCGGGAGAGTCAGCTACTGAGTAT-----------TACTGGAACAATTGCCTTTTTTCTCCTGAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30587677 210 + 172585720 TGCGCCACACCCACAGAGGCTCCATAACAGTGGGAAGAGCAGCCAGGGTCAGAGCCCAGGTGGGTTCACACTGAGGGACCATCCACATCCAGGAC--ACACAGAGGAGGGGCTGGGGTAAGAGTCCAGCCTCTG-CC-TAGGCTGTGGGTGACAGGTGGGTGGGACAGTCAGCTACTGAATAT-----------TACTAGAGTTATTGCCTTTTTTCTCCTGAAG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     244950 208 -    863181 TGCACCACACCCACAGAGGCTCCATAACAGTGGGAAGAGCAGCCAGGGTCAGAGCCCAGGTGGGTTCACACTGAGGGACCATCCACATCCAGGGC--ACACAGAGGAGGGGCTGAAGTAAGAGTCCAGCCCCTG-CC-TAGGCTGTGGGTGGCAGGTGGGCGGGACAGTCAGCTACTGA--AT-----------TACTGGAGTTATTGCCTTTTTTCTCCTGAAG
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1      44234 210 -    735854 TGCGCCACACCCACACAGGCTCCATAACAGTGGCAAGAGCAGCCAGGGTCAGAGCCCAGGTGGGTTCACACTGAGGGACCATCCACATCCAGGAC--ACACAGAGGAGGGGCTGAGGTAAGAGTCCAGCTCCTG-CC-CAGGCTGTGGGTGACAGGTGGGTGGGACAGTCAGCTACTGAGTAT-----------TACTGGAGTTATTGCCTTTTTTCTCCTGAAG
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     554001 210 -   1771730 TGCGCCTCACCCACAGAGGGCCCACAACAGGGGGAAGAGGAGTCAGGGGCAGAGCCCAGGTGGGGTCACACTGA-GGACAACCCACAGCCAGGGC--ACACAGAGGAGGGCCTAAGGTGAGAGACCAGCCCCTGCCC-TGGGCTGTGGGTGACAGGTGGGTGGGACAGTCACCTACTGAGTAT-----------TCCTGGAGCTATTGCCATTTTCCTCCTGAAG
i cebCap1.NW_016107755v1   I 2173 C 0
s aotNan1.NW_018496904v1     120672 210 -    383796 TGCACCACACCCACTGAGGCTCCACAACAGTGGGAAGAGCCGCCATGTTCAGAGCCCAGGTGGGTTCACATTGAGGGACCATCCACATCCAGGGC--ACGCAGAGGAGGGGCTGAGGTGAGTGTCCTGCCCCTG-CC-TAGGCTGTAGGTGACAGGAGGGCGGGACAGTCAGCTACTGAGTAT-----------GACTGGAGCTATTGCCTTTTTTGTCCTGAAG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17330358 180 -  18854210 CGCACCACACT-----------------------------------GGTCACAACCGGGGAACATTCCCACCTGCAGACCACCCACA---AGGGTGGGTGCAGAAAGGGGTCCCAGG-GAGAGCCCAGCGCCTC-CCTTCAGCTGTGAGTGA----TGGACGGGTCAGTCAGCCAC-AAGCATGGGAGCTGGGACGCTGGAGCTCTCTGCAGTTTCCTCCCGAAG
i otoGar3.GL873550         C 0 N 0
e mm10.chr17               58009284 6253 -  94987271 I
e colAng1.NW_012115577v1      88171 1164 -   1829203 I
e chlSab2.chr17            29345729  35 -  71996105 I
e macNem1.NW_012012100v1     138256  33 +   1495729 I
e macFas5.chr4             29955426 701 - 170955103 I

a score=522273.000000
s hg38.chr6_GL000254v2_alt  1329401 161 +   4827813 ACCCCACCCCTGCACACACCAAAACTTTACATTCTTTG--TGGAGCAATTTTCTTTTTAGAAATGTAAACACCCCCTAATCTTAAAGCCACCCAATATCACTCATAGTGACACCGCAGTAGGATAAGCTCTTAACTCCCACC-AAATTAGCCTCAGAGTTGTAG
s panTro5.chr6             30200294 161 + 175400573 ACCCCACCCCTGCACACACCAAAACTTTACATTCTTTG--TGGAGCAATTTTCTTTTTAGAAATGTAAACACCCCCTAATCTTAAAGCCACCCAGTATCACTCATAGTGACACCGCAGTAGGATAAGCTCTTAACTCCCACC-AAATTAGCCTCAGAGTTGTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30430173 161 + 173848474 ACCCCACCCCTGCACACACCAAAACTTTACATTCTTTG--TGGAGCAATTTTCTTTTTAGAAATGTAAACACCCCCTAATCTTAAAGCCACCCAGTATCACTCATAGTGACACCGCAGTAGGATAAGCTCTTAACTTCCACC-AAATTAGCCTCAGAGTTGTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      85165 163 +   2037526 ACCCCACCCCTGCACACACCAAAACTTTACATTCTTTGGTGGGAGCAATTTTCTTTTTAGAAATGTAAACACCCTCTAATCTTAAAGCCACCCAATATCACTCATAGTGACACCGCAGTAGGATAAGCTCTTAACTCCCACC-AAATTAGCCTCAGAGTTGTAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74793291 161 + 122973662 ACCCCACCCCTGCACACACCAAAACTTTACATTCTTTG--CGGAGCAATGTTCTTTTTAGAAATGTAAACACCCCGTAATCTTAAAGCCACCCAATATCACTCATAGTGACACTGCAGTAGGATAAGCTCTTAACTCCCACC-ACATTAGACTCAGAGTTGTAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30587887 155 + 172585720 -----ACCCCTGCACACACCAAAACTCTACATTCTTTG--TGGAGCAGTTTTCTTTTTAGAAATGTAAACA-CCCCCAATGTTAAAGCCACCCAATATCACTCATAGTGACACTGCAGTAGGATAAGCTCTTAACTCCCACC-AAATCAGCCTCAGAGGTGTAG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     245158 156 -    863181 -----ACCCCTGCACACACCAAAACTCTACATTCTTTG--TGGAGCAGTTTTCTTTTTAGAAATGTAAACACCCCCCAATCTTAAAGCCACCCAATATCACTCATAGTGACACCGCAGTAGGATAAGCTCTTAACTCCCACC-AAATTAGCCTCAGAGGTGTAG
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1      44444 154 -    735854 -----ACCCCTGCACACACCAAAACTCTACATTCTTTG--TGGGGCACTTTTCTTTTTAGAAATGTAAATA-CCCCCAATCTTAAAGCCACCCAATATCACTCATAGTGACACTGCAGTAGGATAAGCTCTTAACTCCCACC-AAAT-AGCCTCAGAGGTGTAG
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     554211 161 -   1771730 ATCCCACCCCTGCACACACCAAATCACTGCATTCCTCA--TGGAACAGGCTTCTCTTTTTAAATGTAAACACCCACTAATAATAAAGCCAGCCATTGCCACTCCCAGTGACACCCCAATAGAATACGCTC-TAACTCCCACTGAAATTGCCTTCAGAGTTGCAG
i cebCap1.NW_016107755v1   C 0 I 19
s aotNan1.NW_018496904v1     120882 158 -    383796 ACCCCAACCCTGCACACACCAACACTTCACGTTCTTTG--TAAAGCAGTTGTATTTTTAGAAATGTAA--ACCCCCTAATCTTAAAGCCAACCTTTATCACTCCTAGTGACGCCTCAGTAGGTTAAGCTCTTAACTCCCATCAAAATTAGCCT--GAGTTGTAA
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e colAng1.NW_012115577v1      88171 1164 -   1829203 I
e chlSab2.chr17            29345729  35 -  71996105 I
e macNem1.NW_012012100v1     138256  33 +   1495729 I
e macFas5.chr4             29955426 701 - 170955103 I

a score=48750.000000
s hg38.chr6_GL000254v2_alt  1329562 17 +   4827813 tttttgtttgttagaca
s panTro5.chr6             30200455 17 + 175400573 tttttgtttgttagaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30430334 17 + 173848474 tttttgtttgttagaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      85328 17 +   2037526 tttttgtttgtttgaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74793452 17 + 122973662 tttttgtttgtttgaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30588042 17 + 172585720 tttttgtttgtttgaga
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     245314 17 -    863181 tttttgtttgtttgaga
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1      44598 17 -    735854 tttttgtttgtttgaga
i manLeu1.NW_012107142v1   C 0 C 0
s aotNan1.NW_018496904v1     121040 17 -    383796 tttctgtttgtttgaaa
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17470761  9 -  18854210 tttttgttt--------
i otoGar3.GL873550         N 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     554372 19 -   1771730 I
e colAng1.NW_012115577v1      88171 1164 -   1829203 I
e chlSab2.chr17            29345729 35 -  71996105 I
e macNem1.NW_012012100v1     138256 33 +   1495729 I
e macFas5.chr4             29955426 701 - 170955103 I

a score=286253.000000
s hg38.chr6_GL000254v2_alt  1329579 81 +   4827813 tggggtcttactctgtcatccaggctagaatgcagtggcatg--atcacggcttactgcagcctcga---------actcctcggccccaga
s panTro5.chr6             30200472 81 + 175400573 tgggatcttactctgtcatccaggctagaatgcagtggcatg--atcacggcttactgcagccttga---------actcctcggccccaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30430351 81 + 173848474 tgggatcttactctgtcatccaggctagaatgcagtggcatg--atcacggcttactgcagccttga---------actcctcggccccaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      85345 81 +   2037526 tggggtcttactgtgtcatccaggctagaatgcagtggcatg--atcacggcttactgcagcctcga---------actcctaggccccaga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74793469 80 + 122973662 tggggtctc-ctctgtcatccaggctggaatgcagtggcatg--atcacggcttactgcagcctcga---------acttcctggctccagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30588059 81 + 172585720 tggggtctcactctgtcatccaggctggaatgcagtggcatg--atcacggcttactgcagccttga---------acaccccggctccagc
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     245331 81 -    863181 tggggtctcactctgtcatccaggctggaatgcagtggcatg--atcacagcttactgcagcctgga---------acaccccggctccagc
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1      44615 81 -    735854 tggggtctcactctgtcatccaggctggaatgcagtggcatg--atcacggcttactgcagcctcga---------acaccccggctccagc
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     554391 81 -   1771730 TTTGTttttgttctgttgtccagattggagtacagcggcacg--atcatggcttactgcagccttga---------actccccaactcaagg
i cebCap1.NW_016107755v1   I 19 C 0
s aotNan1.NW_018496904v1     121057 90 -    383796 tgggatcttactccgtcatccaggctggaatgtggtagcatg--attgcagcttatggcagcctgaaactgctcagactgcccagctccagt
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17470770 78 -  18854210 -----tttttctctgttgccctgggtagagtgctatgtcatgtcatcttagctctctgcaacctcaa---------actcttgggttcaagg
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e colAng1.NW_012115577v1      88171 1164 -   1829203 I
e chlSab2.chr17            29345729 35 -  71996105 I
e macNem1.NW_012012100v1     138256 33 +   1495729 I
e macFas5.chr4             29955426 701 - 170955103 I

a score=5159.000000
s hg38.chr6_GL000254v2_alt  1329660 1 +   4827813 g
s panTro5.chr6             30200553 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30430432 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      85426 1 +   2037526 g
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74793549 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30588140 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     245412 1 -    863181 g
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29345764 1 -  71996105 g
i chlSab2.chr17            I 35 C 0
s manLeu1.NW_012107142v1      44696 1 -    735854 g
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     554472 1 -   1771730 g
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     121147 1 -    383796 g
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17470848 1 -  18854210 g
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e colAng1.NW_012115577v1      88171 1164 -   1829203 I
e macNem1.NW_012012100v1     138256 33 +   1495729 I
e macFas5.chr4             29955426 701 - 170955103 I

a score=718577.000000
s hg38.chr6_GL000254v2_alt  1329661 147 +   4827813 atcctcccacctcagactcctgaatagctgtcactagaggtgaacgccacaagccccagctaatgttttgtgttttttgtagagatggggttgtgccatgttgcccaggctggtctctaaggcctgggctcaagtgatctg-ctgccc-
s panTro5.chr6             30200554 147 + 175400573 atcctcccaccacagactcctgaatagctggcactagaggtgaacgccacaagccccagctaatgttttgtgttttttgtagagatggggttgtgccatgttgcccaggctggtctctaaggcctgggctcaagtgatctg-ctgccc-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30430433 147 + 173848474 atcctcccacctcatactcctgaatagctggcactagaggtgaacgccacaagccccagctaatgttttgtgttttttgtagagatggggttatgccatgttgcccaggctggtctctaaggcctgggctcaagtgatcta-ctgccc-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      85427 147 +   2037526 atcctcccacctcagactcctgaatagctggcactagaggtgaacgccacaagccccagctaatgttttgtgttttttgtagagatggggttgtgccatgttacccaggctggtctctaaggcctgggctcaagtgatttg-ccgccc-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74793550 130 + 122973662 atcctcccacctcagactcttgaatagctggcactacaggtgcgcaccaca---------------tctgt-ttttttgtagaga-gaggttgtgccatgttgtccaggctggtctctaaggcctgggctcaagtgatctg-ctgccc-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30588141 147 + 172585720 atccgcccacctcagactcctgaatagctggcactacaggtgtgtgccacaagttccagctaatgttttgtgttttttgtagagatgaggttgtactatgttgcccagactggtctctaaggcccgggctcaagtgatcTG-CTGCCC-
i rheMac8.chr4             C 0 N 0
s macNem1.NW_012012100v1     138289 147 +   1495729 atcctcccacctcggacccctgaatagctggcactacaggcacacaccacaagatccagctaatgttttgtgttttttgtagagatggggttgtgccatgttgcccacactggtctctaatgtatggcctcaagtgatctg-ataccc-
i macNem1.NW_012012100v1   I 33 C 0
s cerAty1.NW_012002535v1     245413 147 -    863181 atccgcccacctcagactcctgaatagctggcactacaggtgcgcgccacaagccccacataatgttttgtgttttttgtagagatgaggttgtgccatgttgcccagactggtctctaaggcctgggctcaagtgatctg-ctgccc-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29345765 146 -  71996105 atcctcccacctcagacccctgaatagctgacactacaggcatgcgccacaagatccagctaatgttttgtg-attttggagagatggggttgtgccatgttgcccacacttgtctctaacgcatggcctcaagcgatctg-ataccc-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      44697 147 -    735854 atccgcccacctcagactcctgaatagctggcactacaggtgtgcgccacaagttccagctaatgttttgtgttttttgtagagatgaggttgtgctatgttgcccagactggtctctaaggcctgggctcaagtgatctg-ctgccc-
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     554473 147 -   1771730 gtcctccctcctcagcctcctgaatagctgagactacaggcatgtgccaccaccttcagttaatg-tttgtgttttttgtagagatggggtttcaccatgttgcctaggccggcttctaattgctgggctcaagggatcttcctgccc-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     121148 147 -    383796 atcctcccacttcagacacccgaatagctggcactaccggtgctcaccccaaaccccaggtaatgttttgtgttttttgtagagatgggtttgtgccatgttccctgggctgatctccaactcgcgggctcaagcaatctg-ctgcta-
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17470849 136 -  18854210 atcctcttgcctcagcctcccaagtagtgggaattacagttacccaccacaactcctggttg------------ttttttagagacaggggtttccactctgactcaggctgttctcgaactcctgagctcaagtaatcag-cccgcct
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e colAng1.NW_012115577v1      88171 1164 -   1829203 I
e macFas5.chr4             29955426 701 - 170955103 I

a score=216325.000000
s hg38.chr6_GL000254v2_alt  1329808 37 +   4827813 cggcctcccaaagtgctaggatta---gcatgaagcccca
s panTro5.chr6             30200701 37 + 175400573 cggcctcccaaagtgctaggatta---gcatgaagcccca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30430580 37 + 173848474 cggcctcccaaagtgctaggatta---gcatgaagcccca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      85574 37 +   2037526 cggcctcccaaagtgctaggatta---gcatgaagcccca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74793680 37 + 122973662 cagcctcccaaagtgctaggatta---gcatgaaccacca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30461314 37 + 172585720 cggcctcccaaagtgctaggatta---gcgtgaaccacca
i rheMac8.chr4             N 0 C 0
s macNem1.NW_012012100v1     138436 37 +   1495729 cagtctcccaaagtgttaggatta---gcatgaagcccca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     245560 37 -    863181 cggcctcccaaagtgttaggatta---gcatgaagcccca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29345911 37 -  71996105 cagcctcccaaattgttaggatta---gcatgaagcccca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      44844 37 -    735854 cagcctcccaaagtgttaggatta---gcatgaagcccca
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     554620 37 -   1771730 cggcctcccaaggttctaggattg---gcatgagccacca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     121295 37 -    383796 cggcctcccaaagtgctagaatta---gcgtgaaccacca
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17470985 38 -  18854210 tggcctcctagagtgctaggattacaggcatg--tcacca
i otoGar3.GL873550         C 0 N 0
e mm10.chr17               58009284 6253 -  94987271 I
e colAng1.NW_012115577v1      88171 1164 -   1829203 I
e macFas5.chr4             29955426 701 - 170955103 I

a score=1272399.000000
s hg38.chr6_GL000254v2_alt  1329845 241 +   4827813 caccaggccTGCAGCTGAGTATTTGGAGCTAAGGCAGGAAGTT--------------------------------GCTGTGGAGTTTGTACCCAGCTAATTTGAAAGGTGGTCCTGAAAGGTAAAGTGCGATTAGGTGGA-CCTTGGTGGG-GAAGCATAG--ATGTTTCTGGTGAGAAGAGAACAAGATAGATGGGAAGCT-TCTAAAAGTGAACATCAGTGGGCCCTGTGCTCACACAGCACTGGGATTTGGAAGACCTTTTCCCACCCACTTTTG
s panTro5.chr6             30200738 241 + 175400573 caccaggccTGCAGCTGAGTATTTGGAGCTAAGGCAGGAAGTT--------------------------------GCTGTGGAGTTTGTACCCAGCTAATTTGAAAGGTGGTCCTGAAAGGTAAAGTGCGATTAGGTGGA-CCTTGGTGGG-GAAGCATAG--ATGTTTCTGATGAGAAGAGCACAAGATAGATGGGAAGCT-TCTAAAAGTGAACATCAGTGGGCCTTGTGCTCACACAGCACTGGGATTTGGAAGAACTTTTCCCACCCACTTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30430617 241 + 173848474 caccaggccTGCAGCTGAGTATTTGGAGCTAAGGCAGGAAGTT--------------------------------GCTGTGGAGTTTGTACCCAGCTAATTTGAAAGGTGGTCCTGAAAGGTAAAGTGCGATTAGGTGGA-CCTTGGTGGG-GAAGCATAG--ATGTTTCTGGTGAGAAGAGAACAAGATAGATGGGAAGCT-TCTAAAAGTGAACATCAGTGGGCCTTGTGCTCACACAGCACTGGGATTTGGAAGAACTTTTCCCACCCACTTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      85611 240 +   2037526 caccaggccTGCAGCTGAGTATTTGGAGCTAAGGCAGGAAGTT--------------------------------GTTGTGGATTTTGTACCCAGCTAATTTGAAAGGTGGTCCTGAAAGGTAAAGTGCGATTAGGTGGA-CCTTGGT-GG-GAAGCATAG--ATGTTTCTGATGAGAAGAGAACAAGATAGATGGGAAGCT-TCTAAAAGTGAACATCAATGGGCCCTGTGCTCACACAGCACTGGGATTTGGAAGACCTTTTCCCACCCACTTTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74793717 273 + 122973662 caccaggccTGCAGCTGAGTATTTGGAGCTAAGGCAGGAAGTTGTTGTGGAGTTTGTACCCGGCTAATCTGAAAGGTTGTGGAGTTTGTACCCGGCTAATCTGAAAGGTGGTCCTGAAAGGTAATGTGTGATTAGGTGGA-CCTTGGCGGG-GAAGCATAG--ATGTCTCTGATGAGAAGAGAACAAGACAGACGGGGACCT-TCTAAAAGTGAACGTCAGCGGGCCCTGTGCTCACACAGCACTGGGATTTGAAAAGCCTTCTCCCAGCCACTTTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30461351 239 + 172585720 cactaggccTGCAGCTCAG-ATTTGGAGCTAAGGCAGGAAGTT--------------------------------GTTGTGGAGTTTGGACCCGGCTACTCTGAAAG--GGTCCTGAAAGGTAATGTGTAATTAGGTGGA-CCTTGGCAGC-GAAGCATAGCTATGCCTCTGAAGAGAACAAGGCAGATCAGATGGGAAGCT-TCTAAAAGTGAACATCAGCGGGCCCTAT-CTCACACAGCACTGGGATTTGGAAAACCTTCTCCCAGACACTTTTG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     138473 241 +   1495729 cactaggccTGCCGCTGAGTATTTGGAGCCTAGGCAGGAAGTT--------------------------------GGTGTGGGTTTTGCACCTGGCTAATCTGAAAGGTGGTCCTGAAAGGTAATGTGTGATTAGGTGGG-CCTTGGTTGG-GGAGCATAG--ATGTCTCTGATGAGAAGAAAACAAGACAGCTGGGAAGCT-TCTAAAAGCGAACGTCAGTGGGCCCTGCGCTCACACAGCACTGGGACTTGGAAAATCTTCTCCCAGCCACTTTTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     245597 241 -    863181 caccaggccTGACGCTGAGTATTTGGAGCTAAGGCAGGAAGGT--------------------------------GATGTGGGGTTTGCACCTGGTTAATCTGAAAGGTGGTTCTGAAAGGTAATGTGTGATTAGGTTGG-CCTTGGCGGG-GAAGCATAG--ATGTCTCTGATGAGAAGAGAACAAGGCAGATGGGAAGTT-TCTAAAAGTGAACGTCAGCGGGCCATGTGCTCACACAGCACGGGGATTTGGAAAACGTTCTCCCATCCACTTTTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29345948 241 -  71996105 cactaggccTGCTGCTGAGTATCTGGAACCTAGGCAGGAAGTT--------------------------------GGTGTGGGGTTTGCACCTGGCTAATCTGAAAGGTGGTCCTGAAAGGTAATGTGTGATTAGGTAGG-CCTTGGTCGG-GTAGCATAG--ATGTTTCTGATGAGAAGAGAACAAGACAGCTGGGAAGCT-TCTAAAAGTGGATTTCAGTGGGCCCTGTGCTCACACAGCACTGGGATTTGGAAAATCTTCTCCCAGTCACTTTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      44881 241 -    735854 caccaggccTGACGCTGAGTATTTGGAGCTAAGGCAGGAAGTT--------------------------------GATGTGGGGTTTGCACCTGGCTAATCTGAAAGGTGGTCCTGAAAGGTAATGTGTGATTAGGTAGA-CCTTGGCGGG-GAAGCATAG--ATGTCTCTGATGAGAAGAGAACAAGGCAGATGGGAAGTT-TCTAAAAGTGAACGTCAGCGGGCCCTGTGCTCACACAGCACTGGGATTTGGAAAACCTTCTCCCAGCCACTTTTG
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     554657 242 -   1771730 caccaggccTGCAGCTGAGTTTTTGGAGCCAAGGCAGGAAGTC--------------------------------ATTGTGGGGTTTGCTTCTGGCTGATCTGAAAGGTGG-CCTGAAAGGTAATGTGTGACTAGGTGGGCCCTTGGCAGGAGGGACATAG--ATGTCTCTGATAAGAGGAAAACAAGACAGATGGGAAAGGATCCACAAGTGAACTTCAGTGGATCCTGTGCTCACACAGCACTGGGA-TTGGAAAATCTTCTTCCAGCCACTTTTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     121332 240 -    383796 caccaggGCTGCGGCTGAGTATTTGGAACCTAATCAGAATGTT--------------------------------GTTGTGGGGTTTGTACCTGGCTAATCTGAAAGGTGGTCCTCAAAGGTAACGTGTGACTAGGCAGG-CCTTGGCAG--GGGGCATAG--GTGTCTCTGATGAGAAGAGAACAAGATGGGTGGGAAACT-TCTAAAAGTGAACTTCCATGGGCCCTGTGCTCACACAGCACTGGGATTTGGAAAATCTTCTCCCCACCACTTTTG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17331250 230 -  18854210 CCTCAGAGTTGCAGCTGAGCTCCTGGAGCC-AGGCAGGAAGTT--------------------------------GTTTCAGGGTTTGCACCTGGCTGATCCAGAGGATGGTCCTGAAAGGTAGTGTCTGAGCAGGTGGG-CTCTGG-----GGGACATGC--AAGTACCTGATGAGGGGAG-ACTAGACAGGTGGGAGGGC-TCCA-AAGTGAGTCTCAGTGGGTCCTGTG---GCCCAGCACAGGGATTTGGAAAATCTTCTGCCAGCCACTTTG-
i otoGar3.GL873550         N 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e colAng1.NW_012115577v1      88171 1164 -   1829203 I
e macFas5.chr4             29955426 701 - 170955103 I

a score=49946.000000
s hg38.chr6_GL000254v2_alt  1330086 7 +   4827813 GCTTGT-G
s panTro5.chr6             30200979 7 + 175400573 GCTTGT-G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30430858 7 + 173848474 GCTTGT-G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      85851 7 +   2037526 GCTTGT-G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74793990 7 + 122973662 GCTTGT-G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30461590 7 + 172585720 GCTTGT-G
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     138714 7 +   1495729 GCTTGT-G
i macNem1.NW_012012100v1   C 0 I 482
s cerAty1.NW_012002535v1     245838 7 -    863181 GCTTGT-G
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29346189 7 -  71996105 GCTTGT-G
i chlSab2.chr17            C 0 T 64665
s manLeu1.NW_012107142v1      45122 7 -    735854 GCTTTT-G
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      89335 7 -   1829203 gcTTGT-G
i colAng1.NW_012115577v1   I 1164 C 0
s cebCap1.NW_016107755v1     554899 7 -   1771730 GCTTGT-G
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     121572 8 -    383796 GCTTGTGG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17331480 7 -  18854210 CCTTGT-G
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e macFas5.chr4             29955426 701 - 170955103 I

a score=530449.000000
s hg38.chr6_GL000254v2_alt  1330093 113 +   4827813 AGCTTTTATTCCACCTTCTTGTCTCCTAGGTCATTGCAGGAAatcccttcatttggtaaacatttatcaaacacctaccatgtgctaggcattgtg-ttaaaggagctggggct
s panTro5.chr6             30200986 113 + 175400573 AGCTTTTATTCCACCTTCTTGTCTCCTAGGTCATTGCAGGAAatcccttcatttggtaaacatttatcaaacacctaccatgtgctaggcattgtg-ttaaaggagctggggct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30430865 113 + 173848474 AGCTTTTATTCCACCTTCTTGTCTCCTAGGTCATTGCAGGAAatcccttcatttggtaaacatttatcaaacacctaccatgtgctaggcattgtg-ttaaaggagctggggct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      85858 113 +   2037526 AGCTTTTATTCCACCTTCTTGTCTCCTAGGTCATTGCAGGAAatcccttcatttggtaaacatttatcaaacacctaccatgtgccaggcattgtg-ttaaaggagctggggct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74793997 113 + 122973662 AGTTTTTATTCCACCTTCTTGACTCCCAGGTCATTGCAGGGAatcccttcagtggataaacatttatcaaacacctaccatgtgccaggcattgtg-ttaaaggagctggggct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30461597 113 + 172585720 AGTTTTTATTCCACCTTCTTGTCTTCCAGGTCATTGCAGGGAatcccttcatttggtaaatatttatcaaacacctaccgtgtgccaggcattgtg-ttaaagaagctgaggct
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     245845 113 -    863181 AGTTTTTATTCCACCTTCTTGTCTCCTAGGTCATTGCAGAGAatcccttcatttggtaaacatttatcaaacacctactatgtgtcaggcattgtg-ttaaaggagctggggct
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1      45129 107 -    735854 AGTTTTTATTCCACCTGCTTGTCTCCTAGGTCATTGCAGGGAatcccttcatttggtaaacatttatcaaacacctactatgtgtcaggcatt-------aaggagctggggct
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      89342 113 -   1829203 GGTTTTTATTCCTCCTTCTTGTCTGCCAGGTCATTGCAGGCAatcccttcatttagtaaacatttatcagacacctaccatgtgctaggcattttg-ttaaaggagctggggct
i colAng1.NW_012115577v1   C 0 I 56
s cebCap1.NW_016107755v1     554906 111 -   1771730 GTTTTTCATTCCACCTTC---TCTGCCAGGCCATTGCAGACAatcccttcatttggtgaacatttatcaaatatctactgtgtgctgggcattgtgtttagaagagctggagct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     121580 113 -    383796 GTTTTTCATTCCACTTTCTTGTCTGCCAGGTCATTGCAGGTGGTCCCttcacttggtaaacagttatcacacacctactgtgtgccaggcattgtg-ttaaaggagctggggct
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17331487 103 -  18854210 GTTTCCCATTCTACGTCC-TGTCTGCTAGGCCATTCCAGGCAACCCTT----TTGGTaaccatttctcaaacacctactgtgtgctcggca------ttagaggagttggggct
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e chlSab2.chr17            29346196 64665 -  71996105 T
e macNem1.NW_012012100v1     138721 482 +   1495729 I
e macFas5.chr4             29955426 701 - 170955103 I

a score=228546.000000
s hg38.chr6_GL000254v2_alt  1330206 62 +   4827813 gaggtaagaggaacc-aaaccccccttgccttcaaggttaagcc-gtcttgctcaggcagagat
s panTro5.chr6             30201099 62 + 175400573 gaggtaagaggaacc-aaaccccccttgccttcaaggttaagcc-gtcttgctcaggcagagat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30430978 62 + 173848474 gaggtaagaggaacc-aaaccccccttgccttcaaggttaagcc-gtcttgctcaggcagaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      85971 63 +   2037526 gaggcaagaggaaccaaaaccccccttgccttcaaggttaagccagtcttgctca-gcagagat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74794110 63 + 122973662 gaggtaagaggaacc-aaaccccccttgccttcaaggttgagctggtcttgctcaggcagagat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30461710 63 + 172585720 gaggtaagaggaaca-aaaccctccttgccttcaaggttgagccaggcttgctcaggcagagat
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     245958 62 -    863181 gagttaagaggaacc-aaacac-ccttgtcttcaaggttgagccagtcttgctcaggcagagat
i cerAty1.NW_012002535v1   C 0 N 0
s manLeu1.NW_012107142v1      45236 62 -    735854 gaggtaagaggaacc-aaacac-ccttgtcttcaaggttgagccagtcttgctcaggcagagat
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     555017 63 -   1771730 gaggtaaaaggaact-aaaccctccttgactttgagagtgacccagtcttgctcaggcagaaat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     121693 63 -    383796 gaggtaagaagaacc-aaaccttccttgtgtttgacattgaggcaatcttgctcaggcagagat
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17331590 59 -  18854210 gagtgaagagtaacc-aaaccctctttgccctcaaggttggcccagtcttgctca----gagat
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e colAng1.NW_012115577v1      89455 56 -   1829203 I
e chlSab2.chr17            29346196 64665 -  71996105 T
e macNem1.NW_012012100v1     138721 482 +   1495729 I
e macFas5.chr4             29955426 701 - 170955103 I

a score=42951.000000
s hg38.chr6_GL000254v2_alt  1330268 11 +   4827813 cagtaaggaaa
s panTro5.chr6             30201161 11 + 175400573 cagtaaggaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30431040 11 + 173848474 cagtaaggaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      86034 11 +   2037526 cagtaaggaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74794173 11 + 122973662 CAGTAAGGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30461773 11 + 172585720 cggtaaggaaa
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     121578 11 -    863181 cggtaaagaaa
i cerAty1.NW_012002535v1   N 0 C 0
s chlSab2.chr17            29281531 11 -  71996105 cggtaaggaaa
i chlSab2.chr17            T 64665 C 0
s cebCap1.NW_016107755v1     555080 11 -   1771730 cagtaaggaaa
i cebCap1.NW_016107755v1   C 0 I 32
s otoGar3.GL873550         17331649 11 -  18854210 cagtaaggaaa
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     121756  0 -    383796 C
e colAng1.NW_012115577v1      89455 56 -   1829203 I
e manLeu1.NW_012107142v1      45298  0 -    735854 C
e macNem1.NW_012012100v1     138721 482 +   1495729 I
e macFas5.chr4             29955426 701 - 170955103 I

a score=53187.000000
s hg38.chr6_GL000254v2_alt  1330279 76 +   4827813 ctctttatttatttatttatttatt------------tatttatttatttattcatttatttttttagac-agagtctcactctgttgc
s panTro5.chr6             30201172 60 + 175400573 ctctttatttatttatttatttatt----------------------------catttatttttttagac-agagtctcactctgttgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30431051 60 + 173848474 ctctttatttatttatttatttatt----------------------------catttatttttttagac-agagtctcactctgttgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      86045 88 +   2037526 ctctttatttatttatttatttatttatttatttatttatttatttatttattcatttatttttttagac-agagtctcactctgttgc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74794184 51 + 122973662 TTCTTTTTttttctttttttttttt-------------------------------------tttgagac-agagtctcactctgccac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30461784 53 + 172585720 ttctttttttttttttttttttttt------------------------------------ttttgagacaagagtcttactctgtcac
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     121589 43 -    863181 ttc---------ttttttttttttt------------------------------------ttttgagac-cgagtctcactctgtcac
i cerAty1.NW_012002535v1   C 0 N 0
s chlSab2.chr17            29281542 47 -  71996105 TTT-----Ttttttttttttttttt------------------------------------ttttgagac-cgagtctcactctgtcac
i chlSab2.chr17            C 0 I 65086
s otoGar3.GL873550         17331660  9 -  18854210 -------------------------------------------------------------------ggc-agagat------------
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     121756  0 -    383796 C
e cebCap1.NW_016107755v1     555091 32 -   1771730 I
e colAng1.NW_012115577v1      89455 56 -   1829203 I
e manLeu1.NW_012107142v1      45298  0 -    735854 C
e macNem1.NW_012012100v1     138721 482 +   1495729 I
e macFas5.chr4             29955426 701 - 170955103 I

a score=119574.000000
s hg38.chr6_GL000254v2_alt  1330355 15 +   4827813 cagtaaggaaattct
s panTro5.chr6             30201232 15 + 175400573 cagtaaggaaattct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30431111 15 + 173848474 cagtaaggaaattct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      86133 15 +   2037526 cagtaaggaaattct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74794235 15 + 122973662 cAGTAAGGAAATTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30461837 15 + 172585720 cagtagggaaattct
i rheMac8.chr4             C 0 N 0
s macFas5.chr4             29956127 15 - 170955103 CAGTAAGGAAATTCT
i macFas5.chr4             I 701 C 0
s macNem1.NW_012012100v1     139203 15 +   1495729 cagtaaggaaattct
i macNem1.NW_012012100v1   I 482 C 0
s cerAty1.NW_012002535v1     246020 15 -    863181 cagtaaggaaattct
i cerAty1.NW_012002535v1   N 0 C 0
s chlSab2.chr17            29346675 15 -  71996105 cagtaaggaaattct
i chlSab2.chr17            I 65086 C 0
s manLeu1.NW_012107142v1      45298 15 -    735854 cagtaaggaaattcg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      89511 15 -   1829203 cagtaaggaaattct
i colAng1.NW_012115577v1   I 56 C 0
s aotNan1.NW_018496904v1     121756 15 -    383796 cagtaagaaaattct
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17331669 15 -  18854210 cagtaaggaaatact
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     555091 32 -   1771730 I

a score=185438.000000
s hg38.chr6_GL000254v2_alt  1330370 27 +   4827813 tacacaaatggttggcagaatatgcaa--
s panTro5.chr6             30201247 27 + 175400573 tacacaaatggttggcagaatatgcaa--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30431126 27 + 173848474 tacacaaatggttggcagaatatgcaa--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      86148 27 +   2037526 tacacaaatggttggcagaacatgcaa--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74794250 27 + 122973662 TACACAAATAGTTGGCAGAGCATACAA--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30589570 27 + 172585720 TACACAAATGGTTGACAGAACATGCAA--
i rheMac8.chr4             N 0 C 0
s macFas5.chr4             29956142 27 - 170955103 TACACAAATGGTTGGCAGAACATGCAA--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     139218 27 +   1495729 tacacaaatggttggcagaacatgcaa--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     246035 27 -    863181 tacacgaatggttggcagaccacgcaa--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29346690 27 -  71996105 tacacaaatggttggcaaaacatgcaa--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      45313 27 -    735854 tacacaaatggttgacagaacatgcaa--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      89526 27 -   1829203 tacacaaatggttggcagaacatgcaa--
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     121771 27 -    383796 tacacaaatggttggcggaacatgcaa--
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17331684 28 -  18854210 aacaCAAGTAGTTAGTGGA-CATGCACAT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     555091 32 -   1771730 I

a score=862161.000000
s hg38.chr6_GL000254v2_alt  1330397 108 +   4827813 cttgctttgcggatgcacatgtagaccatctgctctgaccaaggagtcacagaagcttcat--aag--acacaacatttgagctgcgttttgaggtataaataggagtctga
s panTro5.chr6             30201274 108 + 175400573 cttgctttgcggatgcacatgtagaccatctgctctgaccaaggagtcacagaagcttcat--aag--acacaacatttgagctgcgttttgaggtataaataggagtctga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30431153 108 + 173848474 cttgctttgcggatgcacatgtagaccatctgctctgaccaaggagtcacagaagcttcat--aag--acacaacatttgagctgcgttttgaggtataaataggagtctga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      86175 108 +   2037526 cttgctttgcggatgcacatgtagaccatctgctctgaccaaggagtcacagaagcttcat--aag--acacaacatttgagctgtgttttgaggtataaataggagtctga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74794277 108 + 122973662 CTTGCTTTGCAGATGCACATGTagaccatttgctctgaccaagaagtcacagaagtttcat--aag--agacaacatttgagctgtgttttgaggtataaataggagcccga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30589597 108 + 172585720 CTTGCTTTGCAGATGCACAAGTAGACTAActgctctgaccaaggagtcacagaagtttcct--aag--agacaatatttgagctgtgttttgaagtataagtaggagcccga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29956169 108 - 170955103 CTtgctttgtggatacacatgtagaccatctgctctgaccaaggcgtcacagaagtttcat--aag--aggcaacatttgagctgtgttttgaagtataagtaggagcctga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     139245 108 +   1495729 cttgctttgtggatacacatgtagaccatctgctctgaccaaggcgtcacagaagtttcat--aag--agacaacatttgagctgtgttttgaagtataagtaggagcctga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     246062 108 -    863181 cttgctttgcagatgcacaagtagaccaactgctctgaccaaggagtcacagaagcttcat--aag--agacaacatttgagctgtgttttgaagtataagtaggagcctga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29346717 108 -  71996105 cttgctttgtggatgcacatgtagaccatctgctctgaccaaggcgtcacagaagtttcat--aag--agacaacatttgagctgtattttgaggtataaataggagtctga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      45340 108 -    735854 cttgctttgcagatgcacaagtagactaactgctctgaccaaggagtcacagaagtttcat--aag--agacaacatttgagctgtgttttgaagtataagtaggagcccga
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      89553 108 -   1829203 cttgctttgtggatgcacatgtagaccatctgctctgaccaaggcatcacagaagcttcat--aag--agacaacatttgagctgtattttgaggtataaataggagtctga
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     555123 110 -   1771730 cttgctttgcaggcccacatgtagaccatctgctctgacctaggagtcacagaagcttcataaaaa--agataacatttgagctatgttttgaggtataagtaggacctcaa
i cebCap1.NW_016107755v1   I 32 C 0
s aotNan1.NW_018496904v1     121798 108 -    383796 cttgctttgtggatgcacatgtagaccatctgctctgacaaaggagtcacagaggtttcat--aag--agacaatgtttgagctgggttttgaggtacacataggagCCCAA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17331712 108 -  18854210 TTTGTTTTG-GCATGTACATGCAAAGCA-CCACTCTGACCAAGGAGTCACAGAAACCCAAT--AAAATAAATAGTATTTCAGCTGTGTTTTGAGGTGTAAGTTGGAGCCTGA
i otoGar3.GL873550         C 0 I 210
e mm10.chr17               58009284 6253 -  94987271 I

a score=334704.000000
s hg38.chr6_GL000254v2_alt  1330505 46 +   4827813 caggcATCCAGGACAGGAGAGCATTGCTCAGAACCCAG-G-ACATGAA
s panTro5.chr6             30201382 46 + 175400573 caggcatccaggacaggagagcattGCTCAGAACCCAG-G-ACATGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30431261 46 + 173848474 caggcatccaggacaggagagcattGCTCAGAACCCAG-G-ACATGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      86283 46 +   2037526 caggcatccaggacaggagagcattGCTCAGAACCCAG-G-ACATGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74794385 46 + 122973662 caggcatccaggacaggagagcattGCTCAGAACCCAG-G-ACATGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30589705 47 + 172585720 caggcatccaggataggagagcattGCTCAGAATCCAGAA-ACATGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29956277 46 - 170955103 caggcatccaggataggagagcattGCTCGGAACCCAG-G-ACATGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     139353 46 +   1495729 caggcatccaggataggagagcattGCTCGGAACCCAG-G-ACATGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     246170 47 -    863181 caggcatccaggataggagagcattGCTCAGAACCCAGGA-ACATGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29346825 46 -  71996105 caggcATCCAGGACAGGAGAGCATTGCTCAGAACCCAG-G-ACATGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      45448 47 -    735854 caggcatccaggataggagagtattGCTCAGAACCCAG-GAACATGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      89661 46 -   1829203 caggcatccaggacaggagagcattGCTCAGAGCCTGG-G-ACATGAA
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     555233 46 -   1771730 caggagtccaggacagcagagcattGCTCAGAATCTAG-G-ATGTGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     121906 45 -    383796 CAGGTATCCA-GACAGGAGAGCATTGCTCAAAACCTAG-A-ACATAAC
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17331820 210 -  18854210 I

a score=2833050.000000
s hg38.chr6_GL000254v2_alt  1330551 399 +   4827813 TTTTTCTCTCCTAGGCCAGGCCAGGA--------------CTCAGA----------------CTAAGCTGACTGAG------------------------------------------------------------------------------GAGCCAGGTGCTTCCTGGCAAGGAAGTGTGTCCCATATATGACTATGCAGAAGTCACAGCTGCTCAATATTGAGTCTTGAG-----AC----------------------------------------AGAGAGAGAGAGG------------CCTGATTTG-AA--ATGCAGAATTCT-----Gctgggggcc-cg-ttaaa--atgcagtttctgattcagtaggtctgaggcagggcctgaaaattgcatttctaacaagtcctcaggtgatgccaatgctacttgtccca-------ggaa-----cacactttgagaatcacCACCCTAAGGCAATCCATATTGATTTCTAATATC----------AGAAGAGGGCTGACAGGCAAAGGTATAGGATAAACTAGACCATGCATGGGCCATCTTGGAGAGCACCCCACCC
s panTro5.chr6             30201428 399 + 175400573 TTTTTCTCCCCTAGGCCAGGCCAGGA--------------CTCAGA----------------CTAAGCTGACTGAG------------------------------------------------------------------------------GAGCCAGGTGCTTCCTGGCAAGGAAGTGTGTCCCATATATGACTATCCAGAAGTCACAGCTGCTCAATATTGAGTCTTGAG-----AC----------------------------------------AGAGAGAGAGAGG------------CCTGATTTG-AA--ATGCAGAATTCT-----Gctgggggcc-tg-ttaaa--atgcagtttctgattcagtaggtctgaggcagggcctgaaaattgcatttctaacaagtcctcaggtgatgccaatgctacttgtccca-------ggaa-----cacactttgagAATCACCACCCTAAGGCAATCCATATTGATTTCTAATATC----------AGAAGAGGGCTGACAGGCAGAGGTATAGGATAAACTAGACCATGCATGGGCCATCTTGGAGAGCACCCCACCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30431307 399 + 173848474 TTTTTCTCCCCTAGGCCAGGCCAGGA--------------CTCAGA----------------CTAAGCTGACTGAG------------------------------------------------------------------------------GAGCCAGGTGCTTCCTGGCAAGGAAGTGTGTCCCATATATGACTATCCAGAAGTCACAGCTGCTCAATATTGAGTCTTGAG-----AC----------------------------------------AGAGAGAGAGAGG------------CCTGATTTG-AA--ATGCAGAATTCT-----Gctgggggcc-tg-ttaaa--atgcagtttctgattcagtaggtctgaggcagggcctgaaaattgcatttctaacaagtcctcaggtgatgccaatgctacttgtccca-------ggaa-----cacactttgagAATCACCACCCTAAGGCAATCCATATTGATTTCTAATATC----------AGAAGAGGGCTGACAGGCAGAGGTATAGGATAAACTAGACCATGCATGGGCCATCTTGGAGAGCACCCCACCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      86329 398 +   2037526 TTTTTCTCCCCTAGGCCAGGCCAGGA--------------CTCAGA----------------CTAAGCTGACTGAG------------------------------------------------------------------------------GAGCCAGGTGCTTCCTGGCAACGAAGTGTGTCCCATATATGACTATCCAGAAGTCACAGCTGCTCAATATTGAGTCTTGAG-----AC----------------------------------------AGAGAGAgaga-g------------cctgatttg-aa--atgcagaattct-----gctggggcct-gt-taaaa--atgcagtttctgattcagtaggtctgaggcagggcctgaaaattgcatttctaacaagtcctcaggtgatgccaatgctacttgtccca-------ggaa-----cacactttgagaatcacCACCCTAAGGCAATCCATATTGATTTCTAATATC----------AGAAGAGGGCTGACAGGCAGAGGTATTGGATAAACTAGACCATGTATGGGCCATCTTGGAAAGCACCCCACCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74794431 383 + 122973662 TTTTTCTCCCCTAAGCCAGGCCAGGA--------------CTC-------------------------------AG------------------------------------------------------------------------------GAGCCAGTTGCTTCCTGGCAAGGAAGTGTGTCCCATATACGACTACCCAGAAGTCACAGCTGCTCAATATTGATTCTTGAG-----AC----------------------------------------AGAGAGAGAGACG------------CCTGATTTG-AA--ATGCAGAATTCT-----Gctgggggc--tg-ttaaa--atgcagtttctgattcagtaggtccaaggcagggcctgaaaattgcatttctaacaagttctcaggtaatgccaatgctgcttgtccca-------ggac-----cacactttgagAATCACCACCCTAAGGCAATCCATATTGATTTCTAATATC----------AGAAGAGAGCTGAGAGGCAGAGGCATCGGATAAACTAGACCATGCCTGGCCCATCCTGGAGAGCACCCCACCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30589752 399 + 172585720 TTTTTCTCCCCTAGGCCAGGCCAGGA--------------CTCAGA----------------CTAAGCTGCCTGAG------------------------------------------------------------------------------GAGCCAGAAGCTTCCTGGCAAAGAAGTGTGTCCCACATCTGACCATCCAGAAGTCACAGGTGCTCAATATTGAGTCTTGAG-----AC----------------------------------------AGAGAGAGAGAGG------------CCTGATTTG-AA--ATGCAGAGTTCT-----GTtgggggcc-tg-ttaaa--atgcagtttctgattcagtaggtctgagtcagggcctgaaaattgcatttctaacaagttctcaggtgatgtcaatgctacttgtccca-------gcac-----cacactttgagAATCAGCACCCTATGGCAATCCATATTGATTTCTAATATC----------AGAAGAGGGCTGAAAGGTAGAGGTATAGGATACACTAGACCATGCCTGGCCCATCCTGGACAGCACCCCACCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29956323 414 - 170955103 TTTTTCTCCCCTAGGCCAGGCCAGGA--------------CTCAGA----------------TTAAGCTGACTGAG------------------------------------------------------------------------------GAGCCAGAAGCTTCCTGGAGAGGACGTGTGTCCCACATCTGACCATCCAGAAGTCACAGCTGCTCAATATTGAGTCTTGAG-----AC----------------------------------------AGAGAGAGAGAGG------------CCTGATTTG-AAATATACAGAATTCT-----Gcttggggccttg-ttaaa--atgcagtttctgattcagtagatccaaggcagggactgaaaattgcatttctaacaagttctcaggtgatgccaatgctacttgtcccactttgagACACTTTGTTACACTTTGAAAATCACCACCCTAAGGCCATCCATACTGATTTCTAACATC----------AGAAGAGGGCTGAGAGGCAGAGGTATAGGAGACACTAGACCATGCCTGGCCCATCCTGGAGCGCACCCCACCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     139399 416 +   1495729 TTTTTCTCCCCTAGGCCAGGCCAGGA--------------CTCAGA----------------TTAAGCTGACTGAG------------------------------------------------------------------------------GAGCCAGAAGCTTCCTGGAGAGGAAGTGTGTCCCACATCTGACCATCCAGAAGTCACAACTGCTCAATATTGAGTCTTgag-----ac--------------------------------------agagagagagagagG------------CCTGATTTG-AAATATACAGAATTCT-----Gcttggggccttg-ttaaa--atgcagtttctgattcagtagattcaaggcagggactgaaaattgcatttctaacaagttctcaggtgatgccaatgctacttgtcccactttgagACACTTTGTTACACTTTGAAAATCACCACCCTAAGGCCATCCATACTGATTTCTAACATC----------AGAAGAGGGCTGAGAGGCAGAGGTATAGGAGACACTAGACCATGCCTGGCCCATCCTGGAGCGCACCCCACCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     246217 399 -    863181 TTTTTCTTCCCTAGGCCAGGCCAgca--------------ctcaga----------------ctaagctgactgag------------------------------------------------------------------------------gagccagaagcttcctggaaaggaagtgtgtcccacatctgaCCATCCAGAAGTCACAGCTGCTCAATATTGAGTCTTGAG-----AC----------------------------------------AGAGAGAGAGAGG------------CCTGATTTG-AA--ATGCAGAATTCT-----GTtgggggcc-tg-ttaaa--atgcagtttctgattcagtaggtccgaggcagggcctgaaaactgtatttctaacaagttctcaggtgatgtcaatgctacttgtccca-------ggac-----cacactttgagAATCAGTACCCTACGGCAATCCATATTGGTTTCTAATTAC----------AGAAGAGGGCTGAGAGGCAGAGGTATAGGATACACTAGACCATGCCTGGCCCATCCTGGACAGCACCCCACCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29346871 396 -  71996105 TTTTTCTCCCTTAGGCCAGGCCAGGA--------------CTCAGA----------------CTAAGCTGACTGAG------------------------------------------------------------------------------GAGCCAGAAGCTTCCTGGAGCGGAAGTGTGTCCCACATCTGACCATCCAGAAGTCACAGCTGCTCAATATTGAGTCTTGAG-----AC----------------------------------------AAAGAGAGAGAGG------------CCTGATTTGAAA--AAGCAAAATTCT-----Gctgggggcc-ttcttaaa--atgcagtttctgatgcagtagatccaaggcagagactgaaaattgcatttctgacaagttcttaagtgatgccaatgctacctg------------ggac-----cacactttgagAATCACCGCCCTAAGGCCATCCATACTGATTTCTAACATC----------AGAAGTGGGCTGACAGGCAGAGGTATAGGATATACTAGATCATGCCTGGCCCATCCTGGAGGGTACCCCAGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      45495 399 -    735854 TTTTTCTCCCCTAGGCCAGGCCAGGA--------------CTCAGA----------------CTAAGCTGCCTGAG------------------------------------------------------------------------------GAGCCAGAAGCTTCCTGGCAAAGAAATGTGTCCCACCTCTGACCATCCAGAAGTCACAGCTGCTCAATATTGAGTCTTGAG-----AC----------------------------------------AGAGAGAGAGAGG------------CCTGATTTG-AA--ATGCAGAATTCT-----GTtgggggcc-tg-ttaaa--atgcagtttctgattcagtaggtctgagtcagggcccgacaattgcatttctaacaagttctcaggtgatgtcaatgctacttgtccca-------gcac-----cacactttgcgaatcaGCACCCTATGGCAATCCATATTGATTTCTAATATC----------AGAAGAGGGCTGAAAGGCAGAGGTATAGGATACACTAGACCATGCCTGGCCCATCCTGGACAGCACCCCACCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      89707 396 -   1829203 TTTTTGTCTCTTAGGCCAGGCCAGGA--------------CTCAGA----------------TTAAGATGACTGAG------------------------------------------------------------------------------GAGCCAGGTGCTTCCTGGAAAGGAAGTGTATCCCATATATGACTCTCCAGAAGTCACAGCTGCTCAATATTGAGTCTTGAG-----AC----------------------------------------AGACAGAGAGAGG------------CCTGATTTG-AAA-AAGCAAAATTCT-----Gctgggggccttc-ttaaa--atgcagtttctgattcagtagatccaaggcagggactgaaaattgcatttctgacaagttctcaggtgatgccaatgctacccg------------ggac-----cacactttgagaatcaaCACCCTAAGGCCATCCATACTGATTTCTAACATC----------AGAAGTGGGCTGAGAGGCAGAGGTATAGAATATACTAGACCATGCCTGGCCCATCCTGGAGAGCACCCCAGCC
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     555279 402 -   1771730 TTTTT-TATCCTGGGCCAGGGCAGGA--------------CTCAGA----------------TAAAGTTGACTGGG------------------------------------------------------------------------------AAACCAAGTCCTTCCTGGCAAGGAAGTGTGTCCCACATCTGACTACCCAGAAGTCAG-GATACTCAGTATTGATTCTTCAG-----AT----------------------------------------GGAGAAAGAGAGAG-----------CCTGATTTG-AA--AAGCACAATTCTTTGGAGTAAGGGGA--GA-TTAAA--ATGCagtttctgattcagtaggtccagggtaggacccaaaaattggattgctaacaagtttccaggcgatgtcaatgctgctggtttta-------ggac-----tatgctttgagaaccaACACCCGAAGGCAATGTGGTTTGATTTCTAATATC----------AGAAGAAAGCTAGGAGGCAGAGGTATAGGATAAATGAGAGCACAGCTGGCCAATCCTAGAGAGCTTTCCACCC
i cebCap1.NW_016107755v1   C 0 I 29
s aotNan1.NW_018496904v1     121951 452 -    383796 TTTTTCTCCCCTAGGCCAGGCCAAGA--------------CTCAGA----------------CTAAGCTGGCTGAG------------------------------------------------------------------------------GAGGCAGGTGCTCCCTGGCAAGGAAGTATGTCCCACATCTGACTATCCAGAAGTCAGAGCTACTCAATATTGAGTCTTGAG-----ACAGACGGGGGGGGGGGGGAagagagagagagagagagagagagagaaagagagagagagagagagaCCTGATTTG-AA--AAGTAGAATTCT-----Gctgggggacttg-ttaaa--atgcagtttctgattcagtaggtctgaggcagggcctgaaaactgcatttctaacaagttctcaggtgataccaatgctacttgtccca-------ggac-----catactttgagAATCACCACCCTAAGGTGATCCATGTTGATTCCTAATATC----------AGAAGAGGGCTGAGAGGCACAGGTATAGGACAAACTAGACCATGCCTGGCCCATCCTGGAAAGCAACCCACCC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17332030 523 -  18854210 ttgttctttggcaggccggggctggattataaccggccaccttaggtgtatgtggctggcaccttagccgcttgagccacaggtgctgagccAAGAGTGCACTTCTTGAAAACAGGATGGTAATTTCTTTATCTGGATCAGGACCCATCTGATTGAGGCAGGAACTTTCTAGCAAAAATGTGTGTCCCACATCTGACTACTCAGAAATCCCAGCTACTCAATACTGAGAGTTGAGTGAGCAT----------------------------------------GTGCATGGAGGGG-------------CAAAATTG-AA--AACCATAACTCT-----Tctggagggcttg-ttcaagtatagagcttcttattcagcaggtctggggtagggcctgactgtcacatttctaacaagttcccagttgatgccaatgctgcttgttcta-------gagc-----cccactttgagaaccacCA-CATAAGCCAGTCTGGTTTGGTTTCTATTATCGGAAGATTCTAGAAGAGAGCTGTGAGGCAGAGGAACAGGATTGGATGGACCACACCTGGCCCCTCCTAGGGAGCTGCTGACCC
i otoGar3.GL873550         I 210 C 0
e mm10.chr17               58009284 6253 -  94987271 I

a score=254401.000000
s hg38.chr6_GL000254v2_alt  1330950 36 +   4827813 AAGTCTGCAGCATTTGATTTCCTTGGGATCCCGGGA
s panTro5.chr6             30201827 36 + 175400573 AAGTCTGCAGCATTTGATTTCCTTGGGATCCCAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30431706 36 + 173848474 AAGTCTGCAGCATTTGATTTCCTTGGGATCCCAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      86727 36 +   2037526 AAGTCTGCAGCATTTGATTTCCTTGGGATCCCGGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74794814 36 + 122973662 AAGGCTGCAGCGTTTGATTTCCTTGGGATCCCGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30590151 36 + 172585720 AAGGCTACAGCGTTTGATTTCCTTGGGATCCCGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29956737 36 - 170955103 AAGGCTGCAGCATTTGATTTCCTTGGGATCCCGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     139815 36 +   1495729 AAGGCTGCAGCATTTGATTTCCTTGGGATCCCGGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     246616 36 -    863181 AAGGCTGCAGCATTTGATTTCCTTGGGATCCCGGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29347267 36 -  71996105 AAGGCTGCAGCATTTGATTTCCTTGGGATCCCAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      45894 36 -    735854 AAGGCTACAGCGTTTGATTTCCTTGGGATCCCGGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      90103 36 -   1829203 AAGGCTGCAGTGTTTGATTTCCTTGGGATCCCAGGA
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     122403 36 -    383796 CAGACAGCAAGGTTTGATTTCCTCAGGATCTCAGGA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17332553 35 -  18854210 CAAGCTCCAGTGTTTG-TTTCTTTGGGGTCCCGGGA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     555681 29 -   1771730 I

a score=605500.000000
s hg38.chr6_GL000254v2_alt  1330986 81 +   4827813 ATGGCAGACACCCAGGAAGGAATCAAATGTGGGGTTACAGGGCAATCCAGAGGCTGAGCTT--CACACAGCATCTGGGGTTCC
s panTro5.chr6             30201863 81 + 175400573 ATGGCAGACACCCAGGAAGGAATCAAATGTGGGGTTACAGGGAAATCCAGAGGCTGAGCTT--CACACAGCATCTGGGGTTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30431742 81 + 173848474 ATGGCAGACACCCAGGAAGGAATCAAATGTGGGGTTACAGGGAAATCCAGAGGCTGAGCTT--CACACAGCATCTGGGGTTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      86763 81 +   2037526 ATGGCAGACACCTAGGAAGGAATCAAATGTGGGGTTACAGGGCAATCCAGAGGCTGAGCTT--CACACAGCATCTAGGGTTCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74794850 81 + 122973662 ATGGCAGACACCCAGGAAGGAATCAAATGTGGGGTTACAGGGCAATCCAGAGGCTCAGCTT--TACACAGTATCTGGGGTTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30590187 81 + 172585720 ATGGCAGACACCCAGGAATGAACCAAATGTGGGATTACAGAGCAATCCAGAGGCTCAGTTT--CACACAGCATCTGGGGCTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29956773 81 - 170955103 ATGGCAGACACCCAGGAAGGAATCAAATGTCGGGTTACAGGGCAATTCAGAGGCTCAGCTT--CACACAGCATCTGGGGCTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     139851 81 +   1495729 ATGGCAGACACCCAGGAAGGAATCAAATGTCGGGTTACAGGGCAATTCAGAGGCTCAGCTT--CACACAGCATCTGGGGCTCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     246652 81 -    863181 ATGGCAGACACCCAGGAAGGAACCAAATGTGGGATTACAGAGCAATCCAGAGGCTCAGTTT--CACACAGCATCTGGGGCTCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29347303 66 -  71996105 ATGGC---------------GATCAAATGTCGAGTTACAGAGCAATCCAGAGACTCAGCTT--CACACAGCTTCTGGGGATCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      45930 81 -    735854 ATGGCAGACACCCAGGAATGAACCAAATGTGGGATTACAGAGCAATCCAGAAGCTCAGTTT--CACACAGCATCTGGGGCTCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      90139 81 -   1829203 ATGGCAGACACCCAGGAAGGAATCAAATGTTGAGTTACAGAGCAATCCAGAGGCTCAGCTT--CATACAGCATCTGGGGCTCC
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     555710 81 -   1771730 ATGGCAGACACCCAGGAAGGAACCAAAAGTGGGGTTGCAGGATGATCCAGAGGCTCAGCTT--CATACAGCACCTGAGGCTCC
i cebCap1.NW_016107755v1   I 29 I 461
s aotNan1.NW_018496904v1     122439 81 -    383796 ATGGCAGACGCCCAGGAAGGAACCAAATGTGGAGTCACAGGGCAATCCAGAAGCTCAGCTT--TACACAGCATCTGGGGCTCC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17332588 80 -  18854210 ATGGCAGACACC-AGGAAGAGGGTGAGCAT-GGGTCAGAG-GCGAGTCAGAGACAGGGCTTTACACACAGCTCCAGGGATTCC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I

a score=2651254.000000
s hg38.chr6_GL000254v2_alt  1331067 395 +   4827813 CACTACTTCACAAGTGGCCCC--CACACCCCCA-ATCCTTCCCACCCCTTATGAAACTGACCTACGAGTCTTGCTCTGCTGTCCTGGGCTGTTTGGGCCTGGGATGT--------GAGCTCTGACTATACCTTCTGATCCAAATACAGGGTGACCTCATATGACACATACT---------------TAGAATGGGCTCATAATGAGAACCTTCCAAATTCAGCAAATG-GATTCAATCGTGTGTTTTCCAGGAGAATTACC-AAGTGTTCTCTTTTCTAAATATCACATACTTGAGCTCACATGGACAGTAGAGGAAGTTCTGAGCCTGCTGAAGCCACAATTGGTACATTGGACCCCGTAGAATTCCTTGTAGATTGGGCTTCACCATTTACATCAGGATTTGGTCAAAATTTCCTTCACCA
s panTro5.chr6             30201944 395 + 175400573 CACTACTTCACAAGTGGCCCC--CACACTCCCA-ATCCTTCCCACCCCTTATGAAACTGACCTACGGGTCTTGCTCTGCTGTCCTGGGCTCTTTGGGCCTGGGATGT--------GAGCTCTGACTATACCTTCTGATCCAAATACAGGGTGACCTCATATGACACATACT---------------TAGAATGGGCTCATAATGAGAACCTTCCAAATTCAGCAAATG-GATTCAATCGTGTGTTTTCCAAGAGAATTACC-AAGTGTTCTCTTTTCTAAATATCACATACTTGAGCTCACATGGACAGTAGAGGAAGTTCTGAGCCCGCTGAAGCCACAATTGGTACATTGGACCCCGTAGAATTCCTTGTAGATTGGGCTTCACCATTTACATCAGGATTTGGTCAAAATTTCCTTCACCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30431823 395 + 173848474 CACTACTTCACAAGTGGCCCC--CACACTCCCA-ATCCTTCCCACCCCTTATGAAACTGACCTACGGGTCTTGCTCTGCTGTCCTGGGCTCTTTGGGCCTGGGATGT--------GAGCTCTGACTATACCTTCTGATCCAAATACAGGGTGACCTCATATGACACATACT---------------TAGAATGGGCTCATAATGAGAACCTTCCAAATTCAGCAAATG-GATTCAATCGTGTGTTTTCCAAGAGAATTACC-AAGTGTTCTCTTTTCTAAATATCACATACTTGAGCTCACATGGACAGTAGAGGAAGTTCTGAGCCCGCTGAAGCCACAATTGGTACATTGGACCCCGTAGAATTCCTTGTAGATTGGGCTTCACCATTTACATCAGGATTTGGTCAAAATTTCCTTCACCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      86844 394 +   2037526 CACTACTTCACAAGTGG-CCC--CACACCCCCA-GTCCTTCCCACCCCTTATGAAACTGACCTACGGGTCTTGCTCTGCTGTCCTGGGCTGTTTGGGCCTGGGATGT--------GAGCTCTGACTATACCTTCTGATCCAAATACAGGGTGACCTCATATGACACATACT---------------TAGAATGGGCTCATAATGAGAACCTTCCAAATTCAGCAAATG-GATTCAATCGTGTGTTTTCCAGGAGAATTACC-AAGTGTTCTCTTTTCTAAATATCACATACTTGAGCCCACATGGACACTAGAGGAAGTTCTGAGCCCTCTGAAGCCACAATTGGTACATTGGACCCCGTAGAATTCCTTGTAGATTGGGCTTCACCATTTACATCAGGATTTGGTCAAAATTTCCTTCACCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74794931 394 + 122973662 CACTACTTCACAAGTGGCCCC--CACACCCTCA-ATCCTTCCCACCTCTTATGAAACTGATGTACAGGCCTTTGTCTGCTGTGCTGGGCTGTTTGGGCCTGGGATGT--------GAG--CTGACTGTACCTTCTGATCCAAATACAGGGTGACCTCATATGACACATACT---------------TAGAATGGGCTCATAATGAGGACCTTCCAAATTCGGCAAATG-GATGCAATCATGAGTTTCCTAGGAGAATTACCGAAGTGTTCTCTCTTCTAAATATCACATACTTGAACCCACATGGACAGTAGAGGGAGTTCTGAGCCCGCTGAAGCCACAGTTGGCGCACTGGACCCCGTAGAATTCCTTGTAGATAGAGCTTCACCATTTACATCAGGATTTGGTCAAAATTTCCTTCACCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30590268 403 + 172585720 CACTACTTCACAACTGGCCCC--CACACCCTCA-ATCCTTCCCACCCCTTATGAAACTGACCTATGGGCCTTGCTCTGCTGTCCTGGGATGTTTGGGCCTGAGATGTGACCCTGGGAGCTCTGACTGTACCTTCTGATCCAAATACAGGGTGACTTCATATGACACATACT---------------TAGAATGGGCTCAGAATGAGGACCTTCCAAATTCAGCAAA-G-GGTTCAATCACGTGTTTTCCAGGAGAATTACCCAAGTGTTCTCTTTTTTAAATATCACATCCTTGAGCCCACATGGACAGTAGAGAGAGTTCTGAGCACGCTGAAGCCACAATTGGCACACTGGACCCCATAGAATTCCTTGTAGATTGGGCTTCACCATTTACATCAGGATTTGGTCTAAATTTCCTTCATCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29956854 404 - 170955103 TACTACTTCACAACTGGCCCC--CACACCCTCA-ATCCTTCCCACCCCTTACGAAACTGACCTACAGGCCTTTGTCTGCTGTTCTGGGCTGTTTGGGCCTGGGATGTGACCCTAGGAGCTCTGAGTGTACCTTCTGATCCAAATACAAGGTGACTTCATATGACAAATACT---------------TAGATTGGGCCCATAACGAGGACCTTCCAAATTCAGCAAATG-GATTCAATCTTGGGTTTTCCAGGAGAATTACCCAAGTGTTCTCTCTTCTAAATATCACATACTTGAACCCACATGGACAGCAGAGGGAGTTCTGAGCCTGCTGAAGCCACAATTGGCAGATTGGACCCCGCAGAATTCCTTATAGATTGAGCTTCACCATTTACATCAGGATTTGGTCAAAATTTCCTTCACCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     139932 404 +   1495729 TACTACTTCACAACTGGCCCC--CACACCCTCA-ATCCTTCCCACCCCTTACGAAACTGACCTACAGGCCTTTGTCTGCTGTTCTGGGCTGTTTGGGCCTGGGATGTGACCCTAGGAGCTCTGAGTGTACCTTCTGATCCAAATACAGGGTGACTTCATATGACAAATACT---------------TAGATTGGGCCCATAACGAGGACCTTCCAAATTCAGCAAATG-GATTCAATCTTGGGTTTTCCAGGAGAATTACCCAAGTGTTCTCTCTTCTAAATATCACATACTTGAACCCACATGGACAGCAGAGGGAGTTCTGAGCCTGCTGAAGCCACAATTGGCAGATTGGACCCTGCAGAATTCCTTATAGATTGAGCTTCACCATTTACATCAGGATTTGGTCAAAATTTCCTTCACCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     246733 403 -    863181 CACTACTTCACAACTGGCCCC--CACACCCTCA-ATCCTTCCCACCCTTTATGAAACTGACCTATGGGCCTTGCTCTGCTGTCCTGGGATGTTTGGGCCTGGAGTGTGACCCTAGGAGCTCTGACTGTACCTTCTGATCTAAATACAGGGTGACTTCATATGACACATACT---------------TAGAATGGGCTCATAATGAGGACCTTCCAAATTCAGCAAA-G-GGTTCAATCACGTGTTTTCCAGGAGAATTACCCAAGTGTTCTCTTTTTAAAATATCACATCCTTGAGCCCACATGGACAGTGGAGGGAGTTCTGAGCATGCTTTAGCCACAATTGCCACACTGGACCCCATAGAATTCCTTGTAGATTGGGCTTCACCATTTACATCAGGATTTTGTCTAAATTTCCTTCATCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29347369 406 -  71996105 CACTACTTCACAACTGGCCCCCACACACCCTCA-ATCCTTCCCACCCCTTATGAAACTGACCTACAGGCCTTTGACTGCTGTCCTGGGCTGTTTGGGCCTGGGATGTGACCCTAGGAGCTCTGAGTGTACCTTCTGATCCAAATACAGGGTGACTTCATATGACAAATACT---------------TAGAATGGGCTCATAATGAGGACCTTCCAAATTTGGCAAA-TCGATTCAATCATGAGTTTTCCAGGAGAATTACCCAAGTGTTCTCTCTTCTAAATATCACATACTTGAACCCACATGGACAGCAGAGGGAGTTCTGAGCCTGCTGAAGCCACAATTGGTGCACTGGACCCCAAAGAATTCCTTGTAGATTGAACTTCACCATTTACATCAGGATTTGGTCAAAATTTCCTTCACCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      46011 403 -    735854 CACTACTTCACAACTGGCCCC--TACACCCTCA-ATCCTTCCCACCCCTTATGAAACTGACCTATGGGCCTTGCTCTGCTGTCCTGGTATGTTTGGGCCTGGGATGTGACCCTAGGAGCTCTGACTGTACCTTCTGATCCAAATACAGGGTGACTTCATATGACACATACT---------------TAGAATGGGCTCAGAACGAGGACCTTCCAAATTCAGCAAA-G-GGTTCAATCACGTGTTTTCCAGGAGAATTACCCAAGTGTTCTCTTTTTTAAATATCACATCCTTGAGCCCACATGGACAGTAGAGGGAGTTCTGAGCACGCTGAAGCCACGATTGGCACACTGGACCCCATAGAATTCCTTGTAGATTGGGCTTCACCATTTACATCAGGATTTGGTCAAAATTTCCTTCATCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      90220 406 -   1829203 CACTACTTCACAACTAGTCCCCACACACCCTCA-ATCCTTCCCACCCCTTATGAAACTGACCTACAGGCCTTTGACTACTGTCCTGGGCTGTTTGGGCCCGGGATGTGACCCTACGAGCTCTGACTGTACCTTCTGATCCAAATACAGGGTAACTTCATATGACAAATACT---------------TAGAATGGGCTCATAATGAGGACCTTCCAAATTTGGCAAATC-GATTCATTCATGGGTTTTCCAGGAGAATTACCCAAGTGTTCTCTCTTCTAAATATCACATACTTGAACCCACATGGACAGCAGAGGGAGTTCTGAGCCCGCTGAAGCCACAGTTGGCGCACTGGACCCCAAAGAATTCCTTGTAGATTGAGCTTCACCATTTACATCAGGATTTGGTCAAAATTTCCTTCACCA
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     122520 402 -    383796 CGCTACTTCACAACTGGCTCC--TACACACTCA-ATCCTTCCCATCCCTTATGAAACTGACCTATGGGCCTTGCTTTACTGTCCTGGGCTGTTTGGGCCTGGGATGTGACCCTAGGTGCTCTGAGTGTACCTTCTGATCCAAATACAGGGTGACCTCATATGATACATACT---------------TAGAATGGGCTCATAATGAGGACCTTCAGAATTTGGCAAATG-GATTCAACCATGTGTTTTCCAGAACAATTACCAAGGTGTTCTCTGTTCTAAACATCACATACTGGAGCCCACAGGAACAATTGAAAAAGTTCTGAGCTTGTTG-AGCCACAATTGGCACATTGGACCCCATAGAATTCCCTGTA-ACTGGGCTTCACCAGTTACATCAAGATTTGGTCAAAATTTTCTTCACCA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17332668 389 -  18854210 -----------------------TGTACCCTCAGGTCATTCCCACTCCTCAC---ACTGACCTCCAGGCCTTGCTCTGCTACCCTTGGCTGTTTGGGCCTGTGATGTAACCAGAGGAGGTCCGAGCATAGTTTGTGGCCCAAAGATATGGGGACCTAGTGTGACAAGTATTCACAAACAGGGATAACAGAATGAACTAATAACAAGG--CCTTGAAAATTGGCAGATG-GTTTCAATCTTGTGTTCTGC---AGAATGACCAAAGTGTTTGCT-TCATAAATATCACAGCCTTGATCCCACATGGACACTAGAGGGCG-CCTGAGTGCACTGAAGCCACAATTGTGGCATTGGCCCACCTAGAATCCCTCACAGATTGAATTTTCTGGCTTACACAAAAATTTGGGCAATATTTCCTTCACCA
i otoGar3.GL873550         C 0 I 373
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     555791 461 -   1771730 I

a score=29116.000000
s hg38.chr6_GL000254v2_alt  1331462 6 +   4827813 AACCGG
s panTro5.chr6             30202339 6 + 175400573 AACCGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30432218 6 + 173848474 AACCGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      87238 6 +   2037526 AACCGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74795325 6 + 122973662 AGCCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30590671 6 + 172585720 AGCCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29957258 6 - 170955103 AGCCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     140336 6 +   1495729 AGCCAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     247136 6 -    863181 AGCCAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29347775 6 -  71996105 AGCCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      46414 6 -    735854 AGCCAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      90626 6 -   1829203 AGCTAA
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     122922 6 -    383796 AACCAA
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17333057 373 -  18854210 I
e cebCap1.NW_016107755v1     555791 461 -   1771730 I

a score=389932.000000
s hg38.chr6_GL000254v2_alt  1331468 63 +   4827813 TTGCATTTGTTAAGTAACCATGCTCTCATTTTGACTTTTAATGAATGAAAGACAGACACACAC
s panTro5.chr6             30202345 63 + 175400573 TTGCATTTGTTAAGTAACCATGCTCTCATTTTGACTTTTAATGAATGAAAGACAGACACACAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30432224 63 + 173848474 TTGCATTTGTTAAGTAACCATGCTCTCATTTTGACTTTTAATGAATGAAAGACAGACACACAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      87244 63 +   2037526 TTGCATTTGTTAAGTAACCATGCTCTCATTTTGCCTTTTAATGAATGAAAGACAGACACACAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74795331 59 + 122973662 TTGCATTTGTTAATTAACCATGCCCTCATTTTGCCTTTTAATGAATGAAAGAGAG----ACAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30590677 59 + 172585720 TTGTATTTGTTAATTAACCATGCCCTCATTTTCCCTTTTAATGAATGAAAGACAC----ACAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29957264 59 - 170955103 TTGCATTTGTTAATGAAGCATGCCTTCATTCTGCCTTTTAATGAATGAAAGACAG----ACAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     140342 59 +   1495729 TTGCATTTGTTAATGAAGCATGCCTTCATTCTGCCTTTTAATGAATGAAAGACAG----ACAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     247142 59 -    863181 TTGTATTTGTTAATTAACCATGCCCTCATTTTGCCTTTTAATGAATGAAAGACAG----ACAC
i cerAty1.NW_012002535v1   C 0 I 4
s chlSab2.chr17            29347781 59 -  71996105 TTGCATTTGTTAATTAACCATGCCCTCATTTTGCCTTTTAATGAATGAAAGACCC----ACAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      46420 59 -    735854 TTGTATTTGTTAATTAACCATGCCCTCATTTTCCCTTTTAATGAATGAAAGACAC----ACAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      90632 59 -   1829203 TTGCATTTGTTAATTAACCATGCCCTCATTTTGCCTTTTAATGAATGAAAGACAC----ACAC
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     122928 59 -    383796 TTGCAATTGCTAATTAACCATTCCTTCATTTTTCCATTTAATGAATGAAAGACAG----ACAC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17333430 59 -  18854210 TTGCATTTGTTTATTAATCATGCCCTCATCTTACATTTCAATGAAAGAAAGACAT----ATTT
i otoGar3.GL873550         I 373 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     555791 461 -   1771730 I

a score=440217.000000
s hg38.chr6_GL000254v2_alt  1331531 60 +   4827813 ATAAAGAAAGATAGTGCAATGAAAAAGAAAACAACATACTGAATTAAAGTGACAGGAAAC
s panTro5.chr6             30202408 60 + 175400573 ATAAAGAAAGATAGTGCAATGAAAAAGAAAACAACATACTGAATTAAAGTGACAGGAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30432287 60 + 173848474 ATAAAGAAAGATAGTGCAATGAAAAAGAAAACAACATACTGAATTAAAGTGACAGGAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      87307 60 +   2037526 ATAAAGAAAGATAGTGCAATGAAAAAGAAAACAACATACTGAATTAAAGTGACAGGAAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74795390 60 + 122973662 ATAAAGAAAGATAGTGCAATGAAAAAGAAAACAATATACTGAATTATACTGGTAATAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30590736 58 + 172585720 --ACATAAAGAGAGTGCAATGAAAAAGAAAACAACATACTGAATTAAAGTGGCAGGAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29957323 60 - 170955103 GTAAAGAAAGATAGTGCAATGAAAAAGAAAACAACATACTGAATTATACTGGTAATAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     140401 60 +   1495729 GTAAAGAAAGATAGTGCAATGAAAAAGAAAACAACATACTGAATTATACTGGTAATAAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     247205 60 -    863181 ATAAAGAGAGATAGTGCAATGAAAAAGAAAACAACATACTGAATTAAAGTGGCAGGAAAC
i cerAty1.NW_012002535v1   I 4 N 0
s chlSab2.chr17            29347840 60 -  71996105 ATAAAGAAAGATAGTGCAATTAAAAAGAAAACAACATACTGAATTATACTGGTAATAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      46479 56 -    735854 ATAAAGAG----AGTACAATGAAAAAGAAAACAACATACTGAATTAAAGTGGCAGGAAAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      90691 60 -   1829203 ATAAAGAAAGATAGTGCAATAAAAAAGAAAACAACATACTGAATTATACTGGTAATAAAC
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     556252 60 -   1771730 ATAAAGAAAGATAATGCAATTAAAAAGAAAGCAACATGCTGAATTAAAATGGTAGCAAAC
i cebCap1.NW_016107755v1   I 461 C 0
s aotNan1.NW_018496904v1     122987 60 -    383796 ATAAAGTTAGATAGTGCaatgaaaatgaaaacaacatactgaatgaaaatggtaatgaaT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17333489 56 -  18854210 GTACAGAAAAATAATGCAATTAAAAAG-AAGCAACAGACTGAATTAAAAT---AGTAAAC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I

a score=8281.000000
s hg38.chr6_GL000254v2_alt  1331591 1 +   4827813 A
s panTro5.chr6             30202468 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30432347 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      87367 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74795450 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30590794 1 + 172585720 A
i rheMac8.chr4             C 0 N 0
s macFas5.chr4             29957383 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     140461 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     122847 1 -    863181 A
i cerAty1.NW_012002535v1   N 0 C 0
s chlSab2.chr17            29347900 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      46535 1 -    735854 A
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      90751 1 -   1829203 A
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     556312 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         17333545 1 -  18854210 A
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     123047 0 -    383796 C

a score=70703.000000
s hg38.chr6_GL000254v2_alt  1331592 10 +   4827813 TCCTTGTTTG
s panTro5.chr6             30202469 10 + 175400573 TCCTTGTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30432348 10 + 173848474 TCCTTGTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      87368 10 +   2037526 TCCTTGTTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74795451 10 + 122973662 TCCTTGTTTA
i nomLeu3.chr1a            C 0 I 323
s rheMac8.chr4             30463060 10 + 172585720 TCCTTGTTTA
i rheMac8.chr4             N 0 C 0
s macFas5.chr4             29957384 10 - 170955103 TCCTTGTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     140462 10 +   1495729 TCCTTGTTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     122848 10 -    863181 TCCTTGTTTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29347901 10 -  71996105 TCATTGTTTA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1      90752 10 -   1829203 TCCTTGTTTA
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     556313  9 -   1771730 -TCTTGTTTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     123047  9 -    383796 -CCTTGTTTT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17333546 10 -  18854210 TCCTTGTTTA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e manLeu1.NW_012107142v1      46536  0 -    735854 C

a score=113250.000000
s hg38.chr6_GL000254v2_alt  1331602 28 +   4827813 AGAAGTGATAT-------AATTTTTAGACAGTTTT-
s panTro5.chr6             30202479 28 + 175400573 AGAAGTGATAT-------AATTTTTAGACAGTTTT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30432358 28 + 173848474 AGAAGTGATAT-------AATTTTTAGACAGTTTT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      87378 27 +   2037526 AGAAGTGATAT-------AATTTTTAGACAG-TTT-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74795784 27 + 122973662 aGGAGTGATAT-------AACTTTGAAACAG-TAT-
i nomLeu3.chr1a            I 323 C 0
s rheMac8.chr4             30463070 27 + 172585720 AGGAGTGATAT-------AATTTTTAGACAA-TTT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29957394 27 - 170955103 AGGAGTCATAT-------AACTTTCAAACAG-TAT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     140472 27 +   1495729 AGGAGTCATAT-------AACTTTCAAACAG-TAT-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     122858 27 -    863181 AGGAGTGATAT-------AATTTTTAGACAG-TTT-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29347911 27 -  71996105 AGGAGTGATAT-------AACTTTGAAACAG-TGT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      46536 12 -    735854 ---GGTAAGAT-------AATT--------------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      90762 27 -   1829203 AGGAGTGATAT-------AACTTTGAAACAG-TGT-
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     556322 24 -   1771730 AGGAGTGATGC-------TGTTTTTATACA----T-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     123056 27 -    383796 GGGAGTGATAT-------TATTTTTAGACAG-TTT-
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17333556 35 -  18854210 AGAAATGATGTTTTaaagaattttttcacag-cctt
i otoGar3.GL873550         C 0 I 5337
e mm10.chr17               58009284 6253 -  94987271 I

a score=10183.000000
s hg38.chr6_GL000254v2_alt  1331630  8 +   4827813 TTTTTTA--A
s panTro5.chr6             30202507  8 + 175400573 TTTTTTA--A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30432386  8 + 173848474 TTTTTTA--A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      87405  8 +   2037526 TTTTTTA--A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74795811  8 + 122973662 TTTTTAT--A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30463097  9 + 172585720 TTTTTTT-AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29957421  8 - 170955103 TTTTTAT--A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     140499  8 +   1495729 TTTTTAT--A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     122885 10 -    863181 TTTTTTTTAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29347938  8 -  71996105 TTTTTAT--A
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1      90789  8 -   1829203 TTTTTAT--A
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     556346  6 -   1771730 TTTTAA----
i cebCap1.NW_016107755v1   C 0 I 47
s aotNan1.NW_018496904v1     123083  6 -    383796 TTTTAA----
i aotNan1.NW_018496904v1   C 0 I 3
s otoGar3.GL873550         17338928  8 -  18854210 TTTTTAT--A
i otoGar3.GL873550         I 5337 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e manLeu1.NW_012107142v1      46548  0 -    735854 C

a score=46843.000000
s hg38.chr6_GL000254v2_alt  1331638 7 +   4827813 TTAAGGA
s panTro5.chr6             30202515 7 + 175400573 TTAAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30432394 7 + 173848474 TTAAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      87413 7 +   2037526 TTAAGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74795819 7 + 122973662 TTAAGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30463106 7 + 172585720 TTAAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29957429 7 - 170955103 TTAAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     140507 7 +   1495729 TTAAGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     122895 7 -    863181 TTAAGGG
i cerAty1.NW_012002535v1   C 0 N 0
s chlSab2.chr17            29347946 7 -  71996105 TTAAGGA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1      90797 7 -   1829203 TTAAGGA
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     123092 7 -    383796 TTAAGGA
i aotNan1.NW_018496904v1   I 3 C 0
s otoGar3.GL873550         17338936 7 -  18854210 TTAAAGA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     556352 47 -   1771730 I
e manLeu1.NW_012107142v1      46548 0 -    735854 C

a score=7098.000000
s hg38.chr6_GL000254v2_alt  1331645 1 +   4827813 A
s panTro5.chr6             30202522 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30432401 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      87420 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74795826 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30463113 1 + 172585720 A
i rheMac8.chr4             C 0 N 0
s macFas5.chr4             29957436 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     140514 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     247265 1 -    863181 A
i cerAty1.NW_012002535v1   N 0 C 0
s chlSab2.chr17            29347953 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1      90804 1 -   1829203 A
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     123099 1 -    383796 A
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17338943 1 -  18854210 A
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     556352 47 -   1771730 I
e manLeu1.NW_012107142v1      46548 0 -    735854 C

a score=140081.000000
s hg38.chr6_GL000254v2_alt  1331646 24 +   4827813 GGTAAGAGAATTAATTCTGTTAGG
s panTro5.chr6             30202523 24 + 175400573 GGTAAGAGAATTAATTCTGTTAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30432402 24 + 173848474 GGTAAGAGAATTAATTCTGTTAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      87421 24 +   2037526 GGTAAGAGAATTAATTCTGTCAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74795827 24 + 122973662 GGTAAAAGAATTAATTCTGTCAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30590795 24 + 172585720 GGTAAGAGAATTAATTCTGTCAGA
i rheMac8.chr4             N 0 C 0
s macFas5.chr4             29957437 24 - 170955103 GGTAAAAGAGTTAATTCTGTCAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     140515 24 +   1495729 GGTAAAAGAGTTAATTCTGTCAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     247266 24 -    863181 GGTAAGAGAATTAATTCTGTCAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29347954 20 -  71996105 GGTAAAAG----AATTCTGTCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      46548 12 -    735854 ------------AATTCTGTCAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      90805 24 -   1829203 GGTAAAAGAATTAATTCTGTCAGC
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     123100 24 -    383796 GGTATGATAATTAATTCTGTCAGC
i aotNan1.NW_018496904v1   C 0 I 3
s otoGar3.GL873550         17338944 23 -  18854210 GGTAAAAGAATTATTTCTATCAG-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     556352 47 -   1771730 I

a score=1953177.000000
s hg38.chr6_GL000254v2_alt  1331670 281 +   4827813 CTC---TTTTTT---TAAG---TTTTTTATTTTGA---------------------------------AGGATTTGATTTTGTTTGTTTTGTCTGCCTTGGAATTATCTTTTATTTTATGTTTTGACTTGGCTCAAA--ACTCAAAAagttaaaagtctctctcttatgctaccccatct-tga-caggcagctatttatatcagtttcttgcttattctttcaaaggcattttatgcatatgcaagtcaatctaaatgtatatgtatataatctttctcccatttcacacaaattttagcaaactacatatgctttcctgcacctt
s panTro5.chr6             30202547 281 + 175400573 CTC---TTTTTT---TAAG---TTTTTTATTTTGA---------------------------------AGGATTTGATTTTGTTTGTTTTGTCTGCCTTGGAATCATCTTTTATTTTATGTTTTGACTTGGCTCAAA--ACTCAAAAagttaaaagtctctctcttatgctaccccatct-tga-caggcagctatttatatcagtttcttgcttattctttcaaaggcattttatgcatatgcaagtcaatctaaatgtatatgtatataatctttctcccatttcacacaaattttagcaaactacatatgctttcctgcacctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30432426 281 + 173848474 CTC---TTTTTT---TAAG---TTTTTTATTTTGA---------------------------------AGGATTTGATTTTGTTTGTTTTGTCTGCCTTGGAATTATCTTTTATTTTATGTTTTGACTTGGCTCAAA--ACTCAAAAagttaaaagtctctctcttatgctaccccatct-tga-caggcagctatttatatcagtttcttgcttattctttcaaaggcattttatgcatatgcaagtcaatctaaatgtatatgtatataatctttctcccatttcacacaaattttagcaaactacatatgctttcctgcacctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      87445 280 +   2037526 CTC---TTTTTT---TAAG----TTTTTATTTTGA---------------------------------AGGATTTGATTTTATTTGTTTTGTCTGCCTTGGAATTATCTTTTATTTTATGTTTTGACTTGGCTCAAA--ACTCAAAAAGTTAAAActctgtctcttatgctaccccatct-tga-caggcagccatttatatcagtttcttgcttattctttcaaaggcattttatgcatatgcaagtcaatctaaatgtatatatatataatctttctcccatttcacacaaattttagcaaactacatatgctttcctgcacctt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74795851 286 + 122973662 CTTTGGtttttt---taagtttttttttattttga---------------------------------agtatttggttttgtttgttttctctcctttggaattatattttattttatgttttgacttggctcaaa--attcaaaaagttaaaagactctctcttattctaccccatct-tga-caggtagccatttatatcagtttcttgtctattctttc-aagacattttgtacatatgcaagcaaatataaatgtatatgtatataatctttctcccatttcactcaaattttagcaaactacatctgctttcctgcacttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30590819 286 + 172585720 CTTT--TTTTTTAAAAAAA--GTTTTTTATGTTGA---------------------------------AGGAtttgattttgtttgttttgtctgccttggagttatcttctattttatgttttgatttgGCTCAAA--ATTCAAGAAGTTAAAAGTCTCTCTCTTATGCTAGCCTATCT-TGA-Caggcagccatttctatcagtttcctgcttattctttcaaagacattttgtgcatatgcaagtcaatccaaatgtataggtatataatctttctcccacttgacacaaattttagcaaactacatctgctttcctgcacctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29957461 284 - 170955103 CTTTGGTTTTTT---GAAG--ttgttttattttga---------------------------------agtatttgcttttgtttgttttctctcctttggaattatattttattttatgttTTGACTTGGCTCAAA--ATTCAA-AATTTAAAAGATTCTCTCTTATTCTACCCAATCT-TGA-Caggtagccattcatatcagtttattgcttattctttcaaagacattttgtgcatatacaagcaaatataaatgtatatgtatataatctttctcccatttcactcaaattttagcaaactacatctgctttcctgcaactt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     140539 284 +   1495729 CTTTGGTTTTTT---GAAG--ttgttttattttga---------------------------------agtatttgcttttgtttgttttctctcctttggaattatattttattttatgttTTGACTTGGCTCAAA--ATTCAA-AATTTAAAAGATTCTCTCTTATTCTACCCAATCT-TGA-Caggtagccattcatatcagtttattgcttattctttcaaagacattttgtgcatatacaagcaaatataaatgtatatgtatataatctttctcccatttcactcaaattttagcaaactacatctgctttcctgcaactt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     247290 310 -    863181 Cttt--tttttt----------ttttttttcttgagatggagtctcgctctgtctcccgggctggagtgGGATTTGATTTTGTTTGTTTTGTCTGCCTTGGAATTATCTTCTATTTTATGTTttgacttggctcaaa--attcaagaagttaaaagtctctctcttatgctaccctatct-tga-caggcagccatttatatcagtttcttgcttattc-ttcaaagacattttatgcatatgcgagtcaatctaaatgtataggtatataatctttctcccacttgacacaaattttagcaaactacatctgctttcctgcacctt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29347974 284 -  71996105 atttggtttttt---taag--tttttttattttga---------------------------------agtatttggttttgtttgttttctctcctttggaattatattttattttatgttTTGACTTGGCTCAAA--ATTCAA-AATTTAAAAGACTCTCTCTTATTCTACCCCATCT-TGA-Caggtagccatttatatcagttttttgcttattctttcaaagacattttgtgcatatgcaagcaaatgtaaatgtatatgtatataatctttctcccatttcactgaaattttagcaaactacatctgctttcctgcaactt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      46560 276 -    735854 CTTTTTTTTTTT-AAAAAA--GTTTTTTATGTTGA---------------------------------AGGATTTGATTTTGTTTCTTTTGTCTGCCTTGGAGTTATCTTCTA-TTTATGTTTTGATTTGGCTCAAA--ATTC----------AAGTCTCTCTCTTATGCTAGCCTATCT-TGA-Cagacagccatttctatcagtttcttgcttattctttcaaagacattttgtgcatatgcaagtcaatccaaatgtataggtatataatctttctcccacttgacacaaattttagcaaactacatctgctttcctgcacctt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      90829 284 -   1829203 Tttttgtttttt---taag--tttttttattttga---------------------------------agtatttggttttgtttgttttctctcctttggaactatattttattttatgttTTGACTTGGCTCAAA--ATTCAA-AATTTAAAAGACTCTCTCTTATTCTACGCCATCT-TGA-Caggtagccatttttatcagtttcttgcttattctttcaaagacattttgtgcatatgcaagcatacataaatgtatatgtatataatctttctcccatttcactgaaattttagcaaagtacatctgctttcctgcaactt
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     556399 266 -   1771730 ---ttttttttt----------ttttttattttga---------------------------------ggtatttgattttgtttgttttgtcctttttgGAATTATC------------TTCTGACTTGTCTCAAA--ATTTAAAAGTTTaaaagtctctcttttatcccgtcccatcc-ttatcagggagccactgatgtcagtctcttgcttattctttcaaagacattttatgcatatacaagcaaatataaacatatatgtatatattctatctcccttttcacacaaattttagtaaactacatatgcttttctgcacctt
i cebCap1.NW_016107755v1   I 47 T 57610
s aotNan1.NW_018496904v1     123127 270 -    383796 ---TGGTTTTTT---AAAG---TATTTTATTTTGA---------------------------------AGTAGTTGGT----TTTGCTTTGTCTCCTTTGGAATTATCT--TATTTTGTGTTTTGAGTTGGCTCAAA--ATTCAAAAACTTGAAAGTCTCTC--TTATCCTACCCCATCT-TGA-Caggcagccatttatattggtttcttgcttattcttccaaagacattttgtgcatatgcaagaaaatataaatgtatgtgtatatatt---tctcccatttcacacaaattttagcaaactacatttgctttcctgcacctt
i aotNan1.NW_018496904v1   I 3 C 0
s otoGar3.GL873550         17338967 277 -  18854210 ------TTTTCT---TAAG---GTTTTCACTTTGA---------------------------------AGATTTTGGCTTTATTTGCTTTGTCTCCattaaaattattatttattttatGTTTTGACTTGGttcaaaagattcgaaaggtaaaaagtctctctcttaccttgtcccatctctgt-caggcagccactgatatacatttcttgcttattgctccagagacattttgtgcttctgcaa-ccaaaatagatgaatgtgtctatagtcttccccc---ttcacacagattttagcgaactacatatgctttcctgcacctt
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I

a score=780039.000000
s hg38.chr6_GL000254v2_alt  1331951 116 +   4827813 -gccttttcccttcacattgtatcacaaagaccatcacatgaagaaataccaagag--------------cttagctaca--------tctttgtttgaaattttcatgatacaccattgtatatatatgcaata---tttt
s panTro5.chr6             30202828 116 + 175400573 -gccttttcccttcacattgtatcacaaagaccatcacatgaagaaataccaagag--------------cttagctaca--------tctttgtttgaaattttcatgatacaccattgtatacatatacaata---tttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30432707 115 + 173848474 -gccttttcccttcacattgtatcacaaagaccatcacatgaagaaataccaagag--------------cttagctaca--------tctttgtttgaaattttcatgatacaccattgtatacatatacaata----ttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      87725 116 +   2037526 -gccttttcccttcacattgtatcataaagaccatcacatgaagaaataccaagag--------------cttagctaca--------tctttgtttgaaattttcatgatacaccattgtatacatacgcaata---tttt
i gorGor5.CYUI01015528v1   C 0 I 2
s nomLeu3.chr1a            74796137 123 + 122973662 -gccttttccctttacattgtgtcacaaacaccatcccatgaagaaataccaaaag--------------ctttcctacatctttgtgtctttgtgtgaaattttcatgatactccattgtatacatatgcaata----ttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30591105 116 + 172585720 -ccctttgcccttcacattgtatcacaaagacgatcacatgaagaaataccaagag--------------cttcgctac--------atcttcgtttgaaattttcatgatcctccattgtatacatatgtaata---tttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29957745 124 - 170955103 -gccttttcccttcacaatgtttcacaaagaccatcccatgaagaaataccaaaag--------------ctttcttacctctttgtgtctttgtttgaaattttcatgatactccattgtatagatatgcaata---tttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     140823 124 +   1495729 -gccttttcccttcacaatgtttcacaaagaccatcccatgaagaaataccaaaag--------------ctttcttacctctttgtgtctttgtttgaaattttcatgatactccattgtatagatatgcaata---tttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     247600 116 -    863181 -cccttttcccttcacattgtatcacaaagaccatcacatgaagaaataccaagag--------------ctttgctac--------atcttcgttttaaattttcatgatcctccattgtaaacatatgtaata---tttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29348258 124 -  71996105 -gccttttccctttacattgtgtcacaaagaccatcccatgaagaaataccaaaag--------------ctttcctacatctttgtgtctttgtttgaaattttcatgatactccattgtatacatatgcaata---ttta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      46836 119 -    735854 -ccctttgcccttcacattgtatcacaaagacgatcacatgaagaaataccaagag--------------cttcgcta--------tatctttgtttgaaattttcatgatcctccattgtatacatatgtaatattttttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      91113 124 -   1829203 -gccttttccctttacattgtgtcacaaagaccatcccatgaagaaataccaaaag--------------ctttcctacatctttgtgtctttgtttgaaattttcatgatactccattgtatagatatgcaata---ttta
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     499055 124 -   1771730 -acttctatccttcacattgtatcatggaaactatccgacgaagcaatatcaagag--------------cttcactacatctttctttatttgttttaaatttttgtggtactccactgtatagatatgcaaaa---attt
i cebCap1.NW_016107755v1   T 57610 I 58424
s aotNan1.NW_018496904v1     123397 124 -    383796 -gccttttcccttcacactgtatcattgagaccgtcccatgaagaaataccaagag--------------cttcactaaatctttgtttctctgtttgaaattttcatgatactccattgtatagatgtgaaata---tttt
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17339244 138 -  18854210 gtttttttcctataacaacgtatggtggagaccagcccacagaagaatatcaagagctcgctgtgtcttccttttCTCCTTTATTGTCTTATTTATTAAAATTTCCGTGGAACTTCATTATATAGA-ATGCAATG---CTTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I

a score=507570.000000
s hg38.chr6_GL000254v2_alt  1332067 79 +   4827813 aA--AAAAAAATAGAGATTGCTTCTTTTGAGTGCGGTGCTTtttaatcagccccctcttgataggcatttggattatttcT
s panTro5.chr6             30202944 79 + 175400573 TA--AAAAAAATAGAGATTGCTTCTTTTGAGTGCAGTGCTTtttaatcagccccctcttgataggcatttggattatttcT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30432822 79 + 173848474 aA--AAAAAAATAGAGATTGCTTCTTTTGAGTGCAGTGCTTtttaatcagccccctcttgataggcatttggattatttcT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      87843 79 +   2037526 AA--AAAAAAATAGAGATTGCTTCTTTCGAGTGCGGTGCTTtttaatcagccccctcttgataggcatttggattatttcT
i gorGor5.CYUI01015528v1   I 2 C 0
s nomLeu3.chr1a            74796260 76 + 122973662 aA--AAAAA---ATAGATTGCTCCTTTTGAGTGCAGTGCTTtttaaccagccccctcctaataggcatttgggttatttcT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30591221 81 + 172585720 ttaaAAAAAAATAGAGATTGCTTCTTTTGAGTGTGGTGCTTtttaaccagccccctcttgatgggcattcagattacttcT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29957869 77 - 170955103 ----aACAAAATAGAGATTGCTCATTTTGAGTGCAGTGCTTTTTAACCAGCCCCCTCCTGATAGGCATTTGGATTATTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     140947 77 +   1495729 ----aACAAAATAGAGATTGCTCATTTTGAGTGCAGTGCTTtttaaccagccccctcctgataggcatttggattatttcT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     247716 79 -    863181 tt--taaaaagtagagattgcttcttttgagtgtggtgctttttaaccagtcccctcttgatgggcatttggattatttcT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29348382 79 -  71996105 AA--AAAAAAATAGAGATTGCTCCTTCTGAGTGCAGTGCTTTTTAACCAGCCCCCTCCTGATAGGCATTTGGATTATTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      46955 79 -    735854 ta--aAAAAAATAGAGATTGCTTCTTTTGAGTGTGGTGCTTTTTAACCAGCCCCCTCTTGATGGGCATTCGGATTACTTCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      91237 77 -   1829203 ----AAAAAAGTAGAGATTGCTCCTTTTGAGTGCAGTGCTTTTTAACCAACCCCCTCCTGATAAGCATTTGGATTATTTCT
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     123521 76 -    383796 ----ttaaAAATAGAGATTGCTCCTTTTGAGTGTGGTGCTTTTTAACCAA-CCCCTTTTGGTAGGCATTTGGATTATTTCT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17339382 78 -  18854210 ---TGTTTTAAGTGAGATTATTCCTTTTCAATGTAATGCTTTGtaaccagtctgctccagatagatatttggattctttct
i otoGar3.GL873550         C 0 I 1434
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     499179 58424 -   1771730 I

a score=2321466.000000
s hg38.chr6_GL000254v2_alt  1332146 340 +   4827813 ttcagagaacaattttgcatcatgtaacatcatatggaaaagctgtagtgaccccactcctatatgcatattctagggaaactcacatatctctgagagcaggaggcaatgtcccaggatgttcattgcagtgaggtctacaatagagaaaatctaaaggtcaatgaagagggaaagagaagaattgtagtatattcctcccatggaatactatccaccaatgaaagcaaatgaactatttgtatgaacatagattcatgtcatagaacatgttaactgaaaaagcaagcaaatgaatgataaaattagccagaaacaatttataagaagtctaaaagca
s panTro5.chr6             30203023 340 + 175400573 ttcagagaacaattttgcatcatgtaacatcatatggaaaagctgtagtgaccccactcctatatgcatattctagggaaactcacacatctctgagagcaggaggcaatgtcccaggatgttcattgcagtgaggtctacaatagagaaaacctaaaggtcaatgaagagggaaagagaaaaattgtagtatattcctcccatggaatactatccaccaatgaaagcaaatgaactatttgtatgaacatagattcatgtcatagaacatgttaactgaaaaagcaagcaaatgaatgataaaattagcaagaaacaatttataagaagtctaaaagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30432901 340 + 173848474 ttcagagaacaattttgcatcatgtaacatcatatggaaaagctgtagtgaccccactcctatatgcatattctagggaaactcacatatctctgagagcaggaggcaatgtcccaggatgttcattgcagtgaggtctacaatagagaaaacctaaaggtcaatgaagagggaaagagaaaaattgtagtatattcctcccatggaatactatccaccaatgaaagcaaatgaactatttgtatgaacatggattcatgtcatagaacatgttaactgaaaaagcaagcaaatgaatgataaaattagcaagaaacaatttataagaagtctaaaagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      87922 340 +   2037526 ttcagagaacaattttgcatcatgtaacatcatatggaaaagctgtagtgaccccactcctatatgcatattctagggaaactcacatatctctgagagcaggaggcaatgtcccaggatgttcattgcagtgaggtctacaatagagaaaacctaaaggtcaatgaagagggaaagagaaaaattgtagtatattcctcccatggaatactatccaccaatgaaagcaaatgaattatttgtatgaacatagattcatgtcatagaacatgttaactgaaaaagcaagcaaatgaatgataaaattagcaagaaacaatttataagaagtctaaaagca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74796336 339 + 122973662 TTCACAGAACAATTTTGCATCATGTAGCATCATAT-GAAAAGCTGTAGTGACCccactcctagatgcatatcctaggggaactcacatatctctgagagcaggaggtaatgtcccagaatgttcattgcagtgaggtctacaatagagaaaacctaaagatcaatgaagagggaaagagataaactgcagcatattcctcccatgaaatactatccatcagtgaaaacaaattaactattcgtatgaacatggattcatttcatagaccacattaactgaaaaaggaagcaaatgaatgataaaatcagaaagaaactagttaaaataagtctaaaagca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30591302 338 + 172585720 ttcagagaacaattttgcatcatgtagcatcatgtggaaaaagtgcagtgaccccactcccacatgcatatcctaggggagctcacatatccctgagagcaggaggcaatgtcccaggatgttcattgcagtgaagtctacaatagagacaacctaaaggtcaatgaagagggaaagagataaattat--tatattcctcccatggaatactatccagcaatgaaagcaaattaactatttgtatgaacatggattcatgtcatagaacatgttaactgaagaaacaagcaaatgaatgataaaattagcaagaaacaatttctaagaagtctaaaagca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29957946 339 - 170955103 TCCACAGAACAATTCTGCATCATGTAGCATCATGT-GAAAAACTGTAGTGAGCccactcctagatgcatatcctaggggaactcacatatccctgagagcaggaggcaatgtgtcagaatgttcattgcagtgtggtctacaatagagacaacctaaaggtcaatgaagagggaaagagataaattgtagcatattccttgcctggaacactatccagcaatgaaaacaaattaactatttgtatgaacacagattcatctcatagaccacgttaactgaaaaagcaagcaaatgaatgataaaatcagaaagaaactatttaaaagaagtctaaaagca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     141024 339 +   1495729 TCCACAGAACAATTCTGCATCATGTAGCATCATGT-GAAAAACTGTAGTGAGCccactcctagatgcatatcctaggggaactcacatatccctgagagcaggaggcaatgtgtcagaatgttcattgcagtgtggtctacaatagagacaacctaaaggtcaatgaagagggaaagagataaattgtagcatattccttgcctggaacactatccagcaatgaaaacaaattaactatttgtatgaacacagattcatctcatagaccacgttaactgaaaaagcaagcaaatgaatgatagaatcagaaggaaactatttaaaagaagtctaaaagca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     247795 340 -    863181 ttcagagaacaattttgcatcatgcagcatcgtgtggaaaaagtgcagtgaacccactcccacatgcatatcctaggggagctcacatatccctgagagcaggaggcaatgtcccaggatgttcattgcagtgaggtctacaatagagacaacctaaaggtcaatgaagagggaaagagataaattgtactatattcctcccatgaaatactatccagtaatgaaagcaaatgaactatttgtataaacatagattcatgtcatagaacatgttaactgaaaaagcaagcaaatgaatgataaaattagcaagaaacaatttctaagaagtctaacagca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29348461 339 -  71996105 TTCACAGAACAATTCTGCATCATGTAGCATCATGT-GAAAAACTGTAGTGAGCccactcctagatgcatatcctaggggagctcacatatccctgagagcaagaggcaatgtcccaggatgttcattgcagtgaggtctacaatagagacaacctaaaggtcaatgaagagcgaaagagataaattgtagcatattccttgcctggaataccatccagcaatgaaaacaaattaactgtttgtatgaacacagattcatctcatagaccatgttaactgaaaaagcaagcaaattaatgataaaatcagaaagaaactttttaaaagaagtctaaaagca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      47034 338 -    735854 ttcagagaacaattttgcatcatgtagcatcatgtggaaaaagtgcagtgaccccactcccacatgcatatcctaggggagctcacacatccctgagagcaggaggcaatgtcccaggatgttcattgcagtgaagtctacaatagagacaacctaaaggtcaatgaagagggaaagagataaattgt--tatattcctcccatggaatactatccagcaatgaaagcaaattaactatttgtatgaacatggattcatgtcatagaacatgttaactgaagaaacaagcaaatgaatgataaaattagcaagaaacaatttctaagaagtctaaaagca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      91314 339 -   1829203 TTCACAGAACAATTCTACATCATGTAGCATCATGT-GAAAAACTGTAGTGAGCccactcctagatgcataccctaggggagctcacatatccctgagaacaggaggcaatgtcccaggatgttcattgcagtaaggtctacaatagagacaacctaaaggtcaatgaagagggaaagagatacattgtagcatattcctcccatggaatactatccagcaatgaaaacaaattaactgtttgtatgaacatggattcatctcatagaccatgttaactgaaaaagcaagcaaatgaatgataaaatcagaaagaaactatttaaaagaagtctaaaagca
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     123597 340 -    383796 ttcagagaacagtttcacatcatgtagcatcatatgaaaaagctgcagtgacctcactcctatgagcatgtcctaggaaaactcacatatctctgagaccaggaggtaatgtcccaggatgttcattgcagtgatatttacaatagagacaacctaaatatcaatgaagagggaaagagagaaattgtagcatattcctcccatggaatactatccagcaatgaaaacaaatgaactatttgtatgaacatggattcctgccataggccatgttaactgaaaaaacaagcaaatgaatgataaaatcagcaagaaacaatttataagaagtctaaaaGGA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17340894 334 -  18854210 ttcagagaataatctggcatctcgtggcctcatgtggtcaaggtgcagtgattccccttccacatccacatcccaggggaactcacaca-----gggaccagggagggaatcccaagggtagtcattgcagcaatgtctggagcagaaatagcctaaaggtcactgaggaggggaagagagaaactgtaacatattactc-cacaggatactatccagcagagaaaacaaatggagtatttgcatgaatgtggattcatcccacagaccatattaactgaaaaagcaaatcacagaatgatgtattcaccaagaaacaatttatacagagtctaagaaca
i otoGar3.GL873550         I 1434 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     499179 58424 -   1771730 I

a score=1628031.000000
s hg38.chr6_GL000254v2_alt  1332486 268 +   4827813 AAgccaggcaaggtggtgtacacttgtaatcctagcactttgggaggtcatggtgggtggatcgcttgagttcaggagttcaagaccagcctgggaaacatggcaaaaa-ccctctctccaagaaatac-aaaaattagcccggcatggtggagcatagctatacccccagctacttgggtggctgaggtaggtgtatcgcttgagcctgggaggttgaggtacagtgagctgtgtttgtgccactgcactcaagcctgggtgacagagt
s panTro5.chr6             30203363 268 + 175400573 AAgccaggcaaggtggtgtacacttgtaatcctagcactttgggaggtcatggtgggtggatcgcttgagttcaggagttcaagaccagcctgggaaacatggcaaaaa-ccctctctccaagaaatac-aaaaattagcccagcatggtggagcatagctatacccccagctacttgggtggctgaggtaggtgtatcgcttgagcctgggaggttgaggtacagtgagctgtgtttgtgccgctgcactcaagcctgggtgacggagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30433241 268 + 173848474 AAgccaggcaaggtggtgtacacttgtaatcctagcactttgggaggtcatggtgggtggatcgcttgagttcaggagttcaagaccagcctgggaaacatggcaaaaa-ctctctctccaagaaatac-aaaaattagcccagcatggtggagcatagctatacccccagctacttgggtggctgaggtaggtgtatcgcttgagcctgggaggttgaggtacagtgagctgtgtttgtgccactgcactgaagcctgggtgatggagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      88262 268 +   2037526 AAgccaggcaaggtggtgtacacttgtaatcctagcactttgggaggtcacggtgggtggatcgcttgagttcaggagttcaagaccagcctgggaaacatggcaaaaa-ccctctctccaaaaaatac-aaaaattagcccggcatggtggagcatagctataccccctgctacttgggtggctgaggtgggtgtatcgcttgagcctgggaggttgaggtactgtgagctgtgtttgtgccactgcactcaagcctgggtgacggagt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74796675 268 + 122973662 AAgccaggcaagatggcctttacttgtaatcctagcactttgggaggccatggcgggtggatcacttgagttcaggagtttgagaccagcctgggaaacatggcaaaac-ccctctctacaaaaaatac-aaaaattagtccggcatgatggagcacacctatactcccagctacttgggaggctgaggtgggtggatcgcttgatcctgggaggttgaggtacagtgagctgtgtttgtgccactgcactcaagcctgagtgacagagt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30591640 268 + 172585720 AAgccaggcaaagtggtgtacacttgtaatcctagcactttgggaggccatggtgggtggattgcttgagttcaggagttccagaccagcctgggaaacatggcaaaaa-ccctctctccaaaaaatac-aaaaattagccctgcatggttgagcacagctatactcccaggtacttgggtggctgaggtgggtggatcgcttgagcctgggaggttgaggtacagtgagctgtgtttgtgccaccgcactcaagcctgggtgacagagt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29958285 255 - 170955103 aagccaggcaagatggccttcacttgtaatcctagcactttggaaggccacagtgagtggatcacttgagttcaggagtttgagacaagcctgggaaacatggaaaaaacccccctctccaaaaaatac-aaaaattggcccagcatggtggagcatagctatactcccagctacttgggtggctgaggtgggtggatcgcttgagcctgggaggttgaggtacagtgagctgtgtttgt--------------acgtgggtgacagagt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     141363 255 +   1495729 AAgccaggcaagatggccttcacttgtaatcctagcactttggaaggccacagtgagtggatcacttgagttcaggagtttgagacaagcctgggaaacatggaaaaaacccccctctccaaaaaatac-aaaaattggcccagcatggtggagcatagctatactcccagatacttgggtggctgaggtgggtggatcgcttgagcctgggaggttgaggtacagtgagctgtgtttgt--------------acgtgggtgacagagt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     248135 269 -    863181 AAgccaggcaaagtggtgtacacttgtaatcctagcactttggggggccatggtgggtggattgcttgagttcaggagttccagacctgcctggtaaacatggcaaaaacccctctctccaaaaaatac-aaaaattagccctgcatggttgagcacagctatactcccaggtacttgggtggctgaggtgggtggatcgcttgagcctgggaggttgaggtacagtgagctgtttttgtgccactgcactcaagcgtgggtgacagagt
i cerAty1.NW_012002535v1   C 0 I 12
s chlSab2.chr17            29348800 269 -  71996105 aagccaggcaagatggccttcacttgtaatcctagcactttgggaggccatggtgggtggatcacttgagttcaggagtttgagaccagcctgggaaacatggcaaaatcccctgtctccaaaaaacac-aaaaattggcctggcatggtggagcacagctatactcccagctacttgggtggctgaggtgggcggatcacttgaacctgggatgttgaggtacagtgagctgtgtttgtgccactgcagtcaagcctgggtgacagagt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      47372 268 -    735854 AAgccaggcaaagtggtgtacacttgtaatcctagcactttgggaggccatggtgggtggattgcttgagttcaggagttccagaccagcctggtaaacatggcaaaa-accctctctccaaaaaatac-aaaaattagccctgcatggttgagcacagctatactcccaggtacttgggtggttgaggtgggtggatcgcttgagcctgggaggttgaggtacggtgagctgtgtttgtgccaccgcactcaagcctgggtgacagagt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      91653 269 -   1829203 aagccaggcaagatggtcttgacttgtaatcctagcactttgggaggccatggtgggtggatcacttgagttcaggagtttgagaccagcctgggaaacatggcaaaaacccctgtctccaaaaaacat-aaaaattggcccggtgtagtggagtacagctatagtcccagctacttgggtggctgaggtgggtggatcacttgaacctgggaggttgaggtacagtgagctgtgtttgtgccactgcagtcaagcatgggtgacagagt
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     123937 268 -    383796 AAgccaggcaaggtggtgtacacttgtaatcctagtacattgggaagacacggtgggtggatcacttgagttcaggggtttgagaccagcctgataaacatggcaaaac-ccctctctacaaaaaatacaaaaaattagcccagcatggtagggcatgtctatagtcccagctacttgggaggctgaggtgggaggatta-ttgagcctgggagattgaggcacagcaagctgttattgtgctactgcactcaagtctgtgtgacagagt
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17341228   0 -  18854210 C
e cebCap1.NW_016107755v1     499179 58424 -   1771730 I

a score=11165.000000
s hg38.chr6_GL000254v2_alt  1332754 2 +   4827813 ga
s panTro5.chr6             30203631 2 + 175400573 ga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30433509 2 + 173848474 ga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      88530 2 +   2037526 ga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74796943 2 + 122973662 aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30591908 2 + 172585720 ga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29958540 2 - 170955103 ga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     141618 2 +   1495729 ga
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29349069 2 -  71996105 ga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      47640 2 -    735854 ga
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      91922 2 -   1829203 ga
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     124205 2 -    383796 ga
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17341228 0 -  18854210 C
e cebCap1.NW_016107755v1     499179 58424 -   1771730 I
e cerAty1.NW_012002535v1     248404 12 -    863181 I

a score=38127.000000
s hg38.chr6_GL000254v2_alt  1332756 14 +   4827813 --ggagacctgttcta
s panTro5.chr6             30203633 11 + 175400573 --g---acctgttcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30433511 11 + 173848474 --g---acctgttcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      88532 11 +   2037526 --g---acctgttcta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74796945 11 + 122973662 --g---acccggtcta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30591910 11 + 172585720 --g---acccagtcta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29958542 11 - 170955103 --g---acccggtcta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     141620 11 +   1495729 --g---acccggtcta
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29349071 11 -  71996105 --g---acccggtcta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      47642 11 -    735854 --g---acccagtcta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      91924 11 -   1829203 --g---acccggtcta
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     124207 10 -    383796 --g---accctgtct-
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17341228 10 -  18854210 GGG---AACCTAT---
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     499179 58424 -   1771730 I
e cerAty1.NW_012002535v1     248404 12 -    863181 I

a score=186973.000000
s hg38.chr6_GL000254v2_alt  1332770 39 +   4827813 aaaaaacaaGTCTAAA--AGACTTCAAACAAAGAGATTTCC
s panTro5.chr6             30203644 35 + 175400573 aaaaaacaaGTCTAAA--AGACTTCAAA----GAGATTTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30433522 35 + 173848474 aaaaaacaaGTCTAAA--AGACTTCAAA----GAGATTTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      88543 41 +   2037526 aaaaaacaaGTCTAAAATAGACTTCAAACAAAGAGATTTCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74796956 39 + 122973662 aaaTAACAAGTCTAAA--AGACTTCAAACAAAGAGACTTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30591921 38 + 172585720 aaa-aacaaCTCTAAA--AGACTTCAAACAAAGAGATTTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29958553 39 - 170955103 aaaTAACAAGTCTAAA--AGACTTCAAGCAAGCAGACTTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     141631 39 +   1495729 aaaTAACAAGTCTAAA--AGACTTCAAGCAAGCAGACTTCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     248416 35 -    863181 aaaaaacaaCTCTAAA--AGACTT----CAAAGAGATTTCC
i cerAty1.NW_012002535v1   I 12 C 0
s chlSab2.chr17            29349082 39 -  71996105 aaataacaattctaaa--agacttcaaacaaggagacttcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      47653 38 -    735854 aaa-aTGAACTCTAAA--AGACTTCAAACAAAGAGATTTCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      91935 39 -   1829203 aaataacaagtctaaa--agacttcaaacaaggagacttcc
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     124217 37 -    383796 --aaaaTAAGTCTAAA--AGGCTTCAAACACAGAGATTTCC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17341238 17 -  18854210 ------------------------CAAACAAAGGCATTTTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e cebCap1.NW_016107755v1     499179 58424 -   1771730 I

a score=1409977.000000
s hg38.chr6_GL000254v2_alt  1332809 189 +   4827813 TAAAACTTAGTAAAAATATAAAGGCATACACTAAATTCAAGTCACACATCCTCTT----GCAATTCTTGA-TTTGCTCAGTACAGTACTGACTGAAACATGTGCATATCAGAGCTGTGAAAAATCAAGGCTATCTACATATATTTCTATTATTTTTCTATGTATACTACATATAGCCAATAATATTAAAATGTC
s panTro5.chr6             30203679 187 + 175400573 TAAAACTTAGTAAAAATATAAAGGCACACACTAAATTCAAGTCACACATCCTCTT----GGAATTCTTGA-TTTGCTCAGTACAGTACTGACTGAAAC--GCGCATATCAGAGCTGTGAAAAATCAAGGCTATCTACATATATTTCTATTATTTTTCTATGTATACTACATATAGCCAATAATATTAAAATGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30433557 187 + 173848474 TAAAACTTAGTAAAAATATAAAGGCACACACTAAATTCAAGTCACACACCCTTTT----GGAATTCTTGA-TTTGCTCATTACAGTACTGACTGAAAC--GTGCATATCAGAGCTGTGAAAAATCAAGGCTATCTACATATATTTCTATTATTTTTCTATGTCTACTACATATAGCCAATAATATTAAAATGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      88584 190 +   2037526 TAAAACTTAGTAAAAATATAAAGGCATACACTAAATTCAAGTCACACATCCTCTT----GCAATTCTTGATTTTGCTCAGTACAGTACTGACTGAAACATGTGCATATCAGAGCTGTGAAAAATCAAGTCTATCTACATATATTTCTATTATTTTTCTATGTATACTACATATAGCCAATAATATTAAAATGTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74796995 187 + 122973662 TAAAACTTAGTAAAAATGTAACAGCATACACCAAATTCAAGACACACATCCACCT----GCAATTCTTGA-TTTGCTCAGTACAGTATTGACTGAAACACATGCATATCAGAACTGTGAAAAATC-AGGCTATCTACATATATTTCTATT-TTTTTCTGTGTATTCTACATATAGCCAATAATATTAAAATGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30591959 189 + 172585720 TAAAACTTAGTAAAAATATAAAGGCATGCACCACATTCAAGACACACATCCTCCT----GCAGTTCTCGC-TTTGCTCAGTACAGTATTGACTGAAGCACATGCATATCAGAACTGTGAAAAATCAAGGCTATCTTCATATATTTCTATTATTCTTCTGTGTATACTACATACAGCCAATAATATTAAAATGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29958592 189 - 170955103 TAAAACTTAGTAAAAATATAACAGAATACACCAAATTCAAGACCCACATCCACCT----GCAATTCTTGA-TTTGCTCAGTACAGTATTGACTGAAATATATGCATATCAGAACTGTGGAAAATCAAGGCTATCTACATATATTTCTATTATTTTTCTGTGTATACTACATATAGCCAATAATATTAAAATGTC
i macFas5.chr4             C 0 M 1729
s macNem1.NW_012012100v1     141670 189 +   1495729 TAAAACTTAGTAAAAATATAACAGAATACACCAAATTCAAGACTCACATCCACCT----GCAATTCTTGA-TTTGCTCAGTacagtattgactgaaatatatgcatatcagaactgtggaaaatcaaggctatctACATATATTTCTATTATTTTTCTGTGTATACTACATATAGCCAATAATATTAAAATGTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     248451 189 -    863181 TAACACTTAGTACAAATATAAAGGCATGCACCACATTCAAGGCACACATCCTCCT----GCAATTCTTGC-TTTGCTCAGTACAGTATTGACTCAAGCACACGCATATCAGAACTGTGAAAAATCAAGGCTATCGACATACATTTCTATCATTCTTCTGTGTATACTACATACAGCCAATAATATTAAAATGTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29349121 189 -  71996105 taaaacttagtaaaaatataacagaatacaccaaattcaagacaCACATCCACCT----GCAATTCTTGA-TTTGCTCAGTACAGTATTGACTGAAACACATGCATATCAGAACTGTGAAAAATCAAGGCTATCTATATATATTTCTATTATTCTTCTGTGTATACTACATACAGCCAATAATATTAAAATGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      47691 189 -    735854 TAAAACTTAGTAAAAATATAAAGGCATGCACCACATTCAAGACACACATCCTCCT----GCAGTTCTCGC-TTTGCTCAGTACAGTATTGACTGAAGCACATGCATATCAGAACTGTGAAAAATCAAGGCTATCTTCATATATTTCTATTATTCTTCTGTGTATACTACATACAGCCAATAATATTAAAATGTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      91974 189 -   1829203 taaaacttagtaaaaatataacagaatacaccaaattcaagaCCCACATCCACCT----GCAATTCTTGA-TTTGCTCAGTACAGTATTAACTGAAACACATGCATATCAGAACTGTGAAAAATCAAGGCTATCTACATACATTTCTATTATTCTTCTGTGTATACTACATATAGCCAATAATATTAAAATGTA
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     557603 188 -   1771730 TAAACCTTAGTGAAAATATAAAGTCATACACCAAATTGAAAACACACATCCACCA----GCTGTTCTTGC-TTTGCTCAGTACAGTATTGGCTGAAACAAATGCTTCCCAGAACTGTGGAAAATTTGGGCTATCTACAAGTATTTCTACTA-TTTTCTGTGTATGTGACATGTAGCCAATAATATTAAAATGTC
i cebCap1.NW_016107755v1   I 58424 C 0
s aotNan1.NW_018496904v1     124254 188 -    383796 TAAAACTTAGTAAAAATATGAAGGCATATACCAAATTTGAGACACACATCCACCA----AAAGTCCTTGA-TTTTCTCAGTACAGTATTGACGAAATCATATACACATCAGAAATGTGAAAAATCAATGCTATCTACATATATTTATATTATTTTTCTGTGTATACTACATATAGCCAATATTATT-AAATGTC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17341255 190 -  18854210 TAAAACTTACTAGAAATATAAAAGCAAACACCAAATGCAAGACATTCCCCCTACCCTTGGCAGTCCTTGC-TTTGCTCAATACAGTGTTGACAGATACACATGTGCATCAGAACTGTGAGAACTGAGGAC--TCTGCATGTATTTCCATTA-TTTTCTCCATGTACTACATATAGTGAATAATGTTAAAATGAT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I

a score=321442.000000
s hg38.chr6_GL000254v2_alt  1332998 49 +   4827813 GCCAATTGACAGACCTGGGTGGTGCCTTCACAAAG-ATTTTTTATAATTT
s panTro5.chr6             30203866 49 + 175400573 GCCAATTGACAAACCTGGGTGGTGCCTTCACAAAG-ATTTTTTATAATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30433744 49 + 173848474 GCCAATTGACAAACCTGGGTGGTGCCTTCACAAAG-ATTTTTTATAATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      88774 49 +   2037526 GCCAATTGACAAACCTGGGTGGTGCCTTCACAAAG-ATTTTTTATAATTT
i gorGor5.CYUI01015528v1   C 0 I 60800
s nomLeu3.chr1a            74797182 49 + 122973662 ACCAATTGACAAACCTGGGTGGTGCCTTCACAAAG-ATTTTTTATAATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30592148 49 + 172585720 ACCAATTGACAAACCTGGGTGGTGCCTTCACAAAG-TTTTTTTATAACTC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     141859 49 +   1495729 ACCAATTGACAAACCTGGGTGGTGCCTTCACGAAG-ATTTTTTATAATTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     248640 50 -    863181 ACCAATTGACAAACCTGGGTGGTGCCTTCACAAAGATTTTTTTATAACTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29349310 49 -  71996105 ACCAATTGACAAACCTGGGTGGTGCCTTCACAAAG-ATTTTTTATAATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      47880 49 -    735854 ACCAATTGACAAACCTGGGTGGTGCCTTCACAAAG-TTTTTTTATAACTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      92163 49 -   1829203 ACCAATTGACAAACCTGGGTGCTGCCTTCACAAAG-ATTTTTTATAATTT
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     557791 49 -   1771730 AGAAACTGTCAAACCTGGGTGGTGGCTTTACAAAG-ATTTCTTGTAATTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     124442 49 -    383796 ACCAGTTGACCAACCTAGCTAGTACCTTCACAAAG-ATTTTTAAAAATTG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17341445 47 -  18854210 ACGAATAGACAACCCTGAGTGGTAGTTTCACAAAG-A--TCTTAGAATTC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e macFas5.chr4             29958781 1729 - 170955103 M

a score=591072.000000
s hg38.chr6_GL000254v2_alt  1333047 86 +   4827813 TCTATTCTTTCTTCCAGCTGGAACTACTTTGAATTAATGTTTGTGAAGTGAATCCACAGGAACTGAGCAAAAT------AAGAAAAGAGTTA
s panTro5.chr6             30203915 86 + 175400573 TCTATTCTTTCTTCCAGCTGGAACTACTTTGAATTAATGTTTGTGAAGTGAATCCACAGGAACTGAGCAAAAT------AAGAAAAGAGTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30433793 86 + 173848474 TCTATTCTTTCTTCCAGCTGGAACTACTTTGAATTAATGTTTGTGAAGTGAATCCACAGGAACTGAGCAAAAT------AAGAAAAGAGTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     149623 86 +   2037526 TCTATTCTTTCTTCCAGCTGGAACTACTTTGAATTAATGTTTGTGAAGTGAATCCACAGGAACTGAGCAAAAT------AAGAAAAGAGTTA
i gorGor5.CYUI01015528v1   I 60800 C 0
s nomLeu3.chr1a            74797231 86 + 122973662 TCTATTCTTTCTTCCAGCTGGAACTACTTCGAATTAATGTTTGTGAAGTGAATCCACAGGAACTGAGCAAAAT------AAGAAAAGAGTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30592197 86 + 172585720 TCTATTCTTTCTTCCAGCTACAACTACTTTGAATTAATATTTGTGAAGTGAATCCACAGGAACTGAGCAAAAT------AAGAAAAGAGTTA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     141908 86 +   1495729 TCTATTCTTTCTTCCAGTTAGGACTACTTCAAATTAATATTTGTGAAGTGAATCCACAGGAACTGAGCAAAAT------AAGAAAAGAGTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     248690 86 -    863181 TCTATTCTTTCTTCCAGCTACAACTACTTTGAATTAATATTTGTGAAGTGAATCCACAGGAACAGAGCAAAAT------AAGAAAAGAGTTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29349359 86 -  71996105 TCTATTCCTTCTTCCAGCTAGGACTACTTCGAATTAATACTTGTGAAGTGAATCCATAGGAACTGAGCAAAAT------AAGAAAAGAGTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      47929 86 -    735854 TCTATTCTTTCTTCCAGCTACAACTACTTTGAATTAATATTTGTGAAGTGAATCCACAGGAACCAAGCAAAAT------AAGAAAAGAGTTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      92212 86 -   1829203 TCTATTCCTTCTTCCAGCTAGGACTACTTCAAATTAATATTTGTGAAGTGAATCCACAGGAACTGAGCAAAAT------AAGAAAAGAGTTA
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     557840 86 -   1771730 TCTAGTCTTTCTTCCAGCTAGACCTACTTCATTATAAAATTTGTGAAGCAAATCCACAGGAGTTGAGCAAAAT------AAAAAAGGAGGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     124491 84 -    383796 TCTATTCTTTCTTCCAGCTAGAGTTACATTGAATTAATATTTATAAAGTGAATCCACAGGAAATGAGCAAAAT------GAAAAA--AGTTA
i aotNan1.NW_018496904v1   C 0 I 16
s otoGar3.GL873550         17341492 91 -  18854210 TCTGCTCTTTCTTCCAGCTAGAACAACTTTCTAATAA-ATTCATGAAGTAAATCCATAGGAATTAAGAGAAATGAATAAAAGGAGAGAGTTG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e macFas5.chr4             29958781 1729 - 170955103 M

a score=122238.000000
s hg38.chr6_GL000254v2_alt  1333133 22 +   4827813 TTGAGTGTGAGGAAAGCTGCAC
s panTro5.chr6             30204001 22 + 175400573 TTGAGTGTGAGGAAAGCTGCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30433879 22 + 173848474 TTGAGTGTGAGGAAAGCTGCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     149709 22 +   2037526 TTGAGTGTGAGGAAAGCTGCAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74797317 22 + 122973662 TAGAGTGTGAGGAAAGCCATGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30592283 22 + 172585720 TTGAGTGTGAGGAAAGCTATGG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     141994 22 +   1495729 TTGAGTGTGAGGAAAGCTGTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     248776 22 -    863181 CTGAGTGTGAGGAAAGCTGTGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29349445 22 -  71996105 TTGAGTGTGAGGAAAGCTGTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      48015 22 -    735854 TTGAGTGTGAGGAAAGCTATGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      92298 22 -   1829203 TTGAGTGTGAGGAAAGCTGTGG
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     557926 22 -   1771730 TTGAGTGTGAGGAAAGCTGTGG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         17341583 21 -  18854210 TGGAGAGCGAGG-AAGCTGCTG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     124575 16 -    383796 I
e macFas5.chr4             29958781 1729 - 170955103 M

a score=1682535.000000
s hg38.chr6_GL000254v2_alt  1333155 254 +   4827813 AGAGGTACAGACAGATGGAGAGATGACAATACTGAGCATGTCAGTGACCTTCACAGTAACAGACTTCCTGGAGGAGTGTGAGCTTGAGCCAGAATGAAGAGGATAAAATATAAAA-GAGGGATGAAGGAGTGGGGACTTTAGGGGGCAAATA------------------TGGGATTGAGTAGGCCAGACTGGGAAGCGTGGATGGATTCTGAACA-TTCCACTTTAGGTCTAGCACTTAGAGAAAGAGAAATCATGTTTATTT-AGCTCCTTCC
s panTro5.chr6             30204023 253 + 175400573 AGAGGTACAGACAGATGGAGAGATGACAATACTGAGCATGTCAGTGACCTTCACAGTAACAGACTTCCTGGAGGAGTGTGAGCTTGAGCCAGAATGAAGAGAATAAAATATAAAA-GAGGGATGAAGGAGCGGGGACTTCAGGGGGCAAATA------------------TGGGATTGA-TAGGCCAGACTGGGAAGTGTGGATGGATTCTAAACA-TTCCGCTTTAGGTCTAGCACTTAGAGAAAGAGAAATCATGTTTATTT-AGCTCCTTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30433901 254 + 173848474 AGAGGTACAGACAGATGGAGAGATGACAATACTGAGCATGTCAGTGACCTTCACAGTAACAGACTTCCTGGAGGAGTGTGAGCGTGAGCCAGAATGAAGAGGATAAAATATAAAA-GAGGGATGAAGGAGTGGGGACTTCAGGGGGCAAATA------------------TGGGATTGAGTAGGCCAGAATGGGAAGTGTGGATGGATTCTAAACA-TTCCGCTTTAGGTCTAGCACTTAGAGAAAGAGAAATCATGTTTGTTT-AGCTCCTTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     149731 253 +   2037526 AGAGGTACAGACAGATGGAGAGATGACAATACTGAGCATGTCAGTGACCTTCACAGTAACAGACTTCCTGGAGGAGTGTGAGCTTGAGCCAGAATGAAGAGGATAAAATATAAAA-GAGGGATGAAGGAGTGGGGACTTTAGGGGGCAAATA------------------TGGGATTGAGTAGGCCAGACTGGGAAGTGTGGATGGA-TCTAAACA-TTCCGCTTTAGGTCTAGCACTTAGAGAAAGAGAAATCATGTTTATTT-AGCTCCTTCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74797339 255 + 122973662 AGAGGTACAGACAGATGGAGAGATGACAATACTGAGCATGTCAGTGACCTTCACAGTAACAGACTTCCTGGAGGAGTGTGAGCTGGAGCCAGAATGAAGAGGATAAAATATAAAA-GAGGGATGAAGGAGTGGGGACTTTGGGGGGCAAATA------------------TGGGATTGAGTGGGCCAGACTGGGAAGTGTGGATGGATTCTAAACATTTCCACTTTAGGTCTAGCACTTAGGGAAGGAGAAATCACGTTTATTT-AGCTCCTTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30592305 253 + 172585720 AGAGGTACAGACCAATGGAGTGATGACAATACTGAGTATGTCAGTGACCTTCACAGTAACAGATCTTTTGGAGGAGAGTGAGCTGCAGCCAGAATGAAGTAAATAGAATAT-AAA-GAGGGATGAAGGAGTGGGGACTTCAGGGAGCAAATA------------------TGGGGTTGGGTGGGTTAGACTGGGAAGTGTGGATGGATTCTGGACA-TTCCACTTTAGGTCTAGCACTTACAGAAAGAGAAATCACGTTTATTT-AGCTCCTTCC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     142016 254 +   1495729 AGAGGTACAGACAGATGGAGAGATGACAATACTGAGCATGTTAGTGACCTTCACAGTAACAGACTTCCTGGAGGAGTGTGAGCTGGAGCCAGAATGAAGAGGATAGAATAT-AAACGAGGGATGAAGGAGTGGGGACTTTAGGGGGCAAATA------------------TGGGATTGAGTGGGCCAGACTGGGAAGTGTGGATGGATTCTAAACA-TTCCGCTTTAGGTCTAGCACTTAGGGAAAGAGAAATAATGTTTATTT-AGCTCCTTCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     248798 253 -    863181 AGAGGTACAGACTGATGGAGAGATGACAATACCGAGTATGTCAATGACCTTCACAGTAACAGACCTTTTGGAGGAGAGTGAGCTGGAGCCAGAATGAAGTGGATAGAATAT-AAA-GAGGGATGAAGGAGTTGGGACTTCAGGGAGCAAATA------------------TGGGGTTGGGCAGGTCAGACTGGGAAGTGTGGATGGATTCTGGACA-TTCCGTTTTTGGTCTAGCACTTACAGAAAGAGAAATCACGTTTATTT-AGCTCCTTCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29349467 254 -  71996105 AGAGGTACAGACAGATGGAGAAATGACAATACTGAGCATGTTAGTGACCTTCACAGTAACAGATTTCCTAGAGGTGTGTGAGCTGGAGCCAGAATGAAGAGGATAGAATATAAAA-GAGGGATGAAGGAGTGGGGACTTTAGGGGGCAAATA------------------TAGGATTGAGTGGGCCAGACTGGGAAGTGTGGATGGATTCTAAACA-TTCCGCTTTAGGTCTAGCACTTAGGGAAAGACAAATAATGTTTATCT-AGCTCCTTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      48037 253 -    735854 AGAGGTACTGACCAATGGAGTGATGACAATACTGAGTATGTCAGTGACTTTCACAGTAACAGATCTTTTGGAGGAGAGTGAGCTGCAGCCAGAATGAAGTAAATAGAATAT-AAA-GAGGGATGAAGGAGTGGGGACTTCAGGGAGCAAATA------------------TGGGGTTGGGTGGGTTAGACTGGGAAGTGTGGATGGATTCTGGACA-TTCCACTTTAGGTCTAGCACTTATAGAAAGAGAAATCACGTTTATTT-AGCTCCTTCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      92320 252 -   1829203 AGAGGTACAGACAGATGGAGAGATGACAATACTGAGCATGTTAGTGACCTTCACAGTAACAGACTTCCTGGAGGAGTGTGAACTGGAGCCAGAATGAAGAGGATAGAATA--AAA-GAGGGATGAAGGAGTGGGGACTTTAGGGGGCAAATA------------------TAGGATTGAGTGGGCCAGACTGGGAAGTGTGGATGGATTCTAAACA-TTCTGCTTTAGGTCTAGCACTTAGGGAAAGAGAAATAATGTTTATCT-AGCTCCTTCC
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     557948 252 -   1771730 AGAGGTATAGA-AGACAGAGAGATGACAATACTGAG-ATGTCAGTGACCTTCACAGTAACAGACTTCCTGGAGGAGTGTGAGCTGCAGCCAGAAGGAAGTGGATGGAATATAAAA-AAGGGATGAAGGAGTGAGGATGTCAGGGGGCAAATA------------------TGGGGTTGGGTGGGCCAGACTAAGAAGTGTTGATGGATTCTCAACA-TTCTGCTTTAGGCCTAGCACTTAGAGAAAGAGAACTGACCTTTACTT-AGCTCCTTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     124591 254 -    383796 AGAGGTACAGACAGATGGAGAGATGATAATACCGAG-ATGTCAGTGACCTTCACAGTAACAGACTTCCTGGAGGAGTGTAAGCTGGAGCCAGAGTGACGTGGATAGAATATAAAA-GAGGGATGAAGGAGTGGGAACTTCAGGGGGCAAATA------------------TGGGGTTGAGTGGGCCAGACTGCAAGGTGTGGATGGATTCTGAATA-TTCCACTTTAGGTCTAGCACTTAGAGAAAAAGAAATCACATTTATTTAAGCTCCTTCT
i aotNan1.NW_018496904v1   I 16 C 0
s otoGar3.GL873550         17341604 259 -  18854210 AGAAGTAAAGAAAGGTGAAGAATTGGCAACACTTAGTGCATTAGTGATGGTAACC-TCACAGATTTCCTGGGGGAGTGTGAGCTGAAGGCAAAAGGAAGTGGACAGAAGGTCATA-GAGAGATGAAGGGCTGTGGGCTTCAGGG-GCAGATAGGCCTCAGGTGATGACTCTGGG---GGGCTGGCTGGGCTGGGAGGTGTGGATGGGATCTGAACA--TCTGCTTTAGGTCCAGCCTT-------AGAGAATTCATGTTCATTT-AATGCTTTCC
i otoGar3.GL873550         C 0 I 7917
e mm10.chr17               58009284 6253 -  94987271 I
e macFas5.chr4             29958781 1729 - 170955103 M

a score=1105365.000000
s hg38.chr6_GL000254v2_alt  1333409 180 +   4827813 ACAATCTTTAGAGAAATCTTCTGAAACATTACAAaa-aagacacatgaatggccaatagtcatcagggaaaaatgcaaagtaaaaccacagcgagaaaccactaagcacttattagaatggctgaaatttaagtgattaataaatataaatgttgtcaaggatgtgaaacag-------tctcatcca
s panTro5.chr6             30204276 180 + 175400573 ACAATCTTTAGAGAAATCTTCTGAAACATTACAAaa-aagacacatgaatggccaatagtcatcagggaaaaatgcaaagtaaaaccacagcaagaaaccactaagcacttattagaatggctgaaatttaagtgattaataaatataaatgttgtcaaggatgtgaaacag-------tctcatcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30434155 180 + 173848474 ACAATCTTTAGAGAAATCTTCTGAAACATTACAAaa-aagacacatgaatggccaatagtcatcagggaaaaatgcaaagtaaaaccacagcgagaaaccactaagcactgattagaatggctgaaatttaagtgattaataaatataaatgttgtcaaggatgtgaaacag-------tctcatcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     149984 178 +   2037526 ACAATCTTTAGAG-AATCTTCTGAAACATTACAaaa-aagacacatgaatggccaatagtcatcagggaaaaatgcaaagtaaaaccacagcgagaaaccactaagcacttattagaatggctgaaatttaagtgattaataaatataaatgttgtcaaggatgtgaaacag-------tctcat-ca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74797594 180 + 122973662 ACAATCTTTAGAGAAATCTTCTGaaacattacaaaa-aagacacatgaatggccaatagtcatcagggaaaaatgcaaagtaaaaccacagtgagaaaccactaagcacttattagaatggctgaaatttaagtgattaataaatataaatgttgtcaaggatgtgaaacag-------tctcatcca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30592558 180 + 172585720 ACAATCTTTACAGAAATCTTCTgaaacattacaaaa-aagatatacaaacggccaacagtcatcagggaaaaatgcaaagtaaaaccacggggagaaacccctaagtgcttattagaatggctgaaatttcaatgattaataaatataaatgttggcaaggatgtgaaacag-------tctcatctg
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     142270 180 +   1495729 ACAATCTTTAGAGAAATCTTCTGAAACATTACAAaa-aagacacacgaatagccaatagtcatcaggggaaaatgccaagtaaaaccacagtgagaaaccactaagtgcctattagaatggctgaaatttaaatgattaataaatataaatgttggcaaggatgtgaaacag-------tctcatccg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     249051 180 -    863181 ACAATCTTTATAGAAATCTTCTgacacattacaaaa-aagatacacaaacggccaacagtcatcagggaaaaatgcaaagtaaaaccacggtgagaaacccctaagtgcttattagaatggctgaaatttcaacgattaataaatataaatgttggcaaggatgtgaagcag-------tctcatcca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29349721 177 -  71996105 ACAA---TTAGAGAAATTTTCTGAAACATTACAAAA-AAGACACACAAATAGCcaatagtcatcaggggaaaatgccaagtaaaaccacagtgagaaaccactaagcacttattagaatggctgaaatttaaatgattaataaatataaatgttggcaaggatgtgaaacag-------tctcatccg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      48290 180 -    735854 ACAATCTTTACAGAAATCTTCTgaaacattacaaaa-aagatatacaaacggccaacagtcctcagggaaaaatgcaaagtaaaaccgcggtgagaaaccactaagtgcttattagaatggctgaaatttcaatgattaataaatataaatgttggcaaggatgtgaaacag-------tctcatctg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      92572 180 -   1829203 ACAATCTTTAGAGAAATCTTCTGAAACATTACAAAA-AAGACACACGAATAGCcaatagtcatcaggggaaaatgccaagtaaaaccacagtgagaaaccactaagcacttattagaaaggctgaaatttaaatgattaataaatataaatgttggcaaggatgtgaaacag-------tctcatccg
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     558200 188 -   1771730 ACAATCTTTAGAGAAATCTTCTGAAACATTACAAAAgaaaaggtacgaatggccagtagtcttcagggaaaaatgcaaagtaaaaccacaaggagaaaccactcagtgcccattagaatggctaaagctaaaatgagtaacaactgtaaatgttgtcaaggaggtggaacaatctgtactcttatcca
i cebCap1.NW_016107755v1   C 0 I 16
s aotNan1.NW_018496904v1     124845 180 -    383796 ACCATCTTTAGAGaaatcttctgaaacattacaaaa-aagatatacaaatggccaacagtcatcagggaaaaatgcaaagtaaaaccacagggagaaaccactaagcacttatcagaatgactgaaattcaaataattaataaatacaaatgttgggaaggatgttaaacaa-------tctcaacca
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17341863 7917 -  18854210 I
e macFas5.chr4             29958781 1729 - 170955103 M

a score=107118.000000
s hg38.chr6_GL000254v2_alt  1333589 19 +   4827813 ctgcctataagaatataaa
s panTro5.chr6             30204456 19 + 175400573 ctgcctataagaatataaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30434335 19 + 173848474 ctgcctataagaatataaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     150162 19 +   2037526 ctgcctataagaatataaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74797774 19 + 122973662 ctgcctataagaatataaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30592738 19 + 172585720 ttgcctataagaatatgaa
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     142450 19 +   1495729 ttgcctataagaatatgaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     249231 19 -    863181 ttgcctataagaatatgaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29349898 19 -  71996105 ttgcctataagaatataaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      48470 19 -    735854 ttgcctataagaatatgaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      92752 19 -   1829203 ttgcctataagaatataaa
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     125025 19 -    383796 ttgcctataagaatacaaa
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17341863 7917 -  18854210 I
e cebCap1.NW_016107755v1     558388 16 -   1771730 I
e macFas5.chr4             29958781 1729 - 170955103 M

a score=13326.000000
s hg38.chr6_GL000254v2_alt  1333608 2 +   4827813 ac
s panTro5.chr6             30204475 2 + 175400573 ac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30434354 2 + 173848474 ac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     150181 2 +   2037526 ac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74797793 2 + 122973662 ac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30592757 2 + 172585720 ac
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     142469 2 +   1495729 at
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     249250 2 -    863181 ac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29349917 2 -  71996105 ac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      48489 2 -    735854 ac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      92771 2 -   1829203 ac
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     558404 2 -   1771730 ac
i cebCap1.NW_016107755v1   I 16 C 0
s aotNan1.NW_018496904v1     125044 2 -    383796 aC
i aotNan1.NW_018496904v1   C 0 I 89783
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17341863 7917 -  18854210 I
e macFas5.chr4             29958781 1729 - 170955103 M

a score=1855225.000000
s hg38.chr6_GL000254v2_alt  1333610 367 +   4827813 agccactctgaaaatcacttttatatcatctaataaagttaaacaagctagtactctatggctagcatttccactcctaggtatttactcaagtgaaataaagattatgtccaagaatccctgtacaataatgtccatagttc----atttgtaacaataaaaaaccgtgaatacccccaaaatgtac-aaaaaaattgtgactcagtgatacaatgcaata-ctaccagcattaaaaatgaatgaattactgatacatgcaacaagctgggcagaccacatagatattacaccaagtgcaaaaagctaggcacaagggaggccatatgggatgaatggatacgtatgaagttttgaaacaggaagagctact
s panTro5.chr6             30204477 371 + 175400573 agacactctgaaaatcacttttatatcatctaataaagttaaacaagctagtactctatggctagcatttccactcctaggtatttactcaagtgaaataaagattatgtccaagaatccctgtacaataatatccatagttcttttatttgtaacaataaaaaaccgtgaatacccccacaatgtac-aaaaaaattgtgactcagtgatacaatgcaata-ctaccagcattaaaaatgaatgaattactgatacatgcaacaagctgggcagaccacatagatattacaccaagtgcaaaaagctaggcacaagggaggccatatgggatgaatggatacgtatgaagttttgaaacaggaagagctact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30434356 371 + 173848474 agacactctgaaaatcacttttatatcatctaataaagttaaacaagctagtactctatggctagcatttccactcctaggtatttactcaagtgaaataaagattatgtccaagaatccctgtacaataatatccatagttcctttatttgtaacaataaaaaaccgtgaatacccccacaatgtac-aaaaaaattgtgactcagtgatacaatgcaata-ctaccagcattaaaaatgaatgaattactgatacatgcaacaagctgggcagaccacatagatattacaccaagtgcaaaaagctaggcacaagggaggccatatgggatgaatggatacgtatgaagttttgaaacaggaagagctact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     150183 368 +   2037526 agccactctg-aaatcacttttatatcatctaataaagtt-aacaagctagtattctttggctagcatttccactcctaggtatttactcaagtgaaataaagattatgtccaagaatccctgtacaataatgtccatagttcctttatttgtaacaat-aaaaaccatgaatacccccacaatgaac-aaaaaaattgtgactcagtgatacaatgcaata-ctaccagcattaaaaatgaatgaattactgatacatgcaacaagctgggcagaccacatagatattacaccaagtgcaaaaagctaggcacaagggaggccatatgggatgaatggatacgtatgaagttttgaaacaggaagagctact
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74797795 365 + 122973662 agccactctgaaaatcagttttatatcatctaataaagttaaacaagctagtactctatggctagcatttccactcctaggtatttactcaagtgaaataaagattatgtccaagaatccctgtacaataatgtccatagttcctttatttgta------aaaaaccaataatacccccacaatgtac-aaaaaaattgtgactcaatgatacaacgcaata-ctaccagcattaaaaatgaacgaattactgatacatgcaacaaactgggtagaccatatagatattacaccaagtgcaaaaagccaggcacaagggaggccatatgggatgaatggatatgtatgaagttttgaaacaggaagagctatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30592759 371 + 172585720 agccactgtgaaagtcagttttgcatcatctgataaagttaaacaagttagtactctatggttagcatttccattcctaagtatttactccagagaaataaag-ttatgtccgagaattgctgtacaagtatttccatagttcctttatttgtaacaataaaaaaacaagaatagccccacaatgtacaaaaaaaaatgtgattcaatcatacaatggaata-ctaccagcaataaaaatgaatgaactactgatacatgcaacaacctgggtggaccacatagatattacaccaagtgccaaaagccagacacaagggaggccacatgggataagtggatacgtatgaagttttaaaacaggaagaactact
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     142471 369 +   1495729 agccactctgaaaatcagttttatatcatctaataaagctaaacaagctagtactctatggctagcatttccactcctaggtatttactcaagagacataaagattatgtccaagaatccctgtacaataatgtccatagttcctttatttgtaacaat--aaaaatcgggataccctcacaatgtac-aaaaaaattgtgactcaatgatacaatggaata-ctaccagtattgaaaatggatgaactactgatacatgcaacaacctgggtagaccacatagatattacaccaagtgcaaaaagccagacatgagggaggccatatggaatgagtgcatatgtataaagttttgaaacaggaagagctact
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     249252 367 -    863181 agccactctgaaaatcagttttgtatcatctgataaagttaaacaagctagtactctatggctagcatttccactcctaagtatttactccagagaaataaag-ttatgtccaagaattcctgtacaagtatttccatagttcctttatttgtaacaataaaataaaaagaatagccccacaatgtacaaaaaaaattgtgattcaatcatacaatggaata-ctaccagcaataaaaatgaatgaactactgata----caacaacctgggtggaccacatagatattacaccaagtgcaaaaagccagacacaagggaggccacatggcatgagtggatacgtatgaagttttaaaacaggaagaactact
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29349919 370 -  71996105 agccactctgaaaatcagttttatatcatctaataaagctaaacaagctagtactctatggctagcatttccactcctaggtatttacttaagagacataaagattatgttcaagaatccctgtacaataatgtccatagttcctttatttgtaacaat-aaaaaccgggaatacccccacaatgtac-aaaaaaattgtgactcaatgatacaatggaata-ctaccagtattaaaaatgaatgaactactgatatatgcaacaacctggatagaccacatagatattacaccaactgcaaaaagccagacacgagggaggccatatggaatgagtggatatgtataaagttttgaaacaggaagagctact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      48491 370 -    735854 agccactgtgaaagtcagttttgcatcatctgataaagttaaacaagttagtactctatggttagcatttccattcctaagtatttactccagagaaataaag-ttatgtccaagaattgctgcacaagtatttccatagttcctttatttgtaacaataaaaaaacaagaatagccccacaatgtac-aaaaaaaatgtgattcaatcatacaatggaata-ctaccagcaataaaaatgaatgaactactgatacatgcaacaacctgggtggaccacatagatattacaccaagtgccaaaagccagacacaagggaggccacatgggataagtggatacgtatgaagttttaaaacaggaagaactact
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      92773 370 -   1829203 agccactctgaaaatcagttttatatcacctaataaagctaaatgagctagtactctatggctagcatttccactcctaagtatttactcaagagacataaagattatgttcaagaatccctgtacaataatgtccatagttcctttatttgtaacaat-aaaaatcgggaatacccccacaatgtac-aaaaaaattgtgactctatgatacaatggaata-ctaccagtattaaaaatgaatgaactactgatacatgcaacaatctgggtagaccacatagatattacaccaactgcaaaaagccagacacgagggaggccatctgggatgagtggatatgtataaagttttgaaacaggaagagctaCT
i colAng1.NW_012115577v1   C 0 M 1360
s cebCap1.NW_016107755v1     558406 370 -   1771730 agccacttttaaaatcagttttgcatcatctaataaagttaaacaaactagtactctatggctagcatttccactcctaggtatttactcaaaagaaatgaaaattatatccaaaaattcctatataagaatgttcataattcctttatttgtaatagtaaaaaatcaggaatactccc--aatatgc-aaaaaaattgtgaatcagtcatacagtggaatatttatcagcaataaaaataaatgaactactgatatgtacaacaacatggatatatcacatagttactattccaagtgcaaaaagcgagatgcaatggaaaccatactggatgagagaatttgtatgacgttttaaaacaggaagaactact
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17341863 7917 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e macFas5.chr4             29958781 1729 - 170955103 M

a score=1624227.000000
s hg38.chr6_GL000254v2_alt  1333977 386 +   4827813 ctatcatgatagtcatcagatcaatggctgctggg-gaaagggggctaatttgaaggcagaaaaatagagaacttcgtgtatcttcatagtggcatgggtgctatggctgtatttgtcaaaattcattgatgaatttgatacagatctgatcatttcag--tatatgtaaattttacAAGTTTAAAATGCTTACAATAAAAATTTAAACGTTAGTAATAAAAAATAGTAATTGaaaatattagcaacaaaatccaacaacagatcaaaacaatacaccataatcacgtgagttttatacccaggatgcaaggattgtttgacatatgtgaatcaaaatatgtcatataccgcatcaacagaatgaaggacataaaccatattatcatct
s panTro5.chr6             30204848 386 + 175400573 ctatcatgatagtcatcagatcaatggctgctggg-gaaagggggctaatttgaaggcagaaaaatagagaactttgtgtatcttcatagtggcatgggtgctacgactgtatttgtcaaacttcattgatgaatttgatacagatctgatcatttcag--tatatgaaaattttacAAGTTTAAAATGCTTACAATAAAAATTTAAATGTTAGTAATAAAAAATAGTAATTGaaaatattagcaacaaaatccaacaacagatcaaaacaatacaccataatcacgtgagttttatacccaggatgcaaggattgtttgacatatgtgaatcaaaatatgtcatatactgcatcaacagaatgaaggacataaaccatattatcatct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30434727 386 + 173848474 ctatcatgatagtcatcagatcaatggctgctggg-gaaagggggctaatttgaaggcagaaaaatagagaactttgtgtatcttcatagtggcatgggtgctacgactgtatttgtcaaacttcattgatgaatttgatacagatctgatcatttcag--tatatgaaaattttacAAGTTTAAAATGCTTACAATAAAAATTTAAATGTTAGTAATAAAAAATAGTAATTGaaaatattagcaacaaaatccaacaacagatcaaaacaatacaccataatcacgtgagttttatacccaggatgcaaggattgtttgacatatgtgaatcaaaatatgtcatataccgcatcaacagaatgaaggacataaaccatattatcatct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     150551 385 +   2037526 ctatcatgatagtcatcagatcaatgactgctggg-gaaagggggctaatttgaaggcagaaaaatagagaactttgtgtat-ttcatagtggcatcggtgctacggctgtatttgtcaaaattcattgatgaatttgatacagatctgatcatttcag--tatatgtaaattttacAAGTTTAAAATGCTTACAATAAAAATTTAAACGTTAGTAATAAAAAATAGTAATTGaaaatattagcaacaaaatccaacaacagatcaaaacaatacaccataatcacgtgagttttatacccaggatgcaaggattgtttgacatatgtgaatcaaaatatgtcatataccgcatcaacagaatgaaggacataaaccatattatcatct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74798160 386 + 122973662 ctatcatgatagtcatcagatcaatggctgctggg-gaaagggggctaatttgaacgcagaaaaatagagaactttgtgtatcttcatagtggcatgggtgctatggctgtatttgtcaaaattcattgatgaatttgatacagatctgatcatttcag--tatacgtaaattttacAAGTTTAAAATGCTTACAATAAAAATTTAAATGTTAGTAATAAAAAATAGTAATTGaaaatattagcaacaaaatccaacaacagatcaaaacaatacaccataattatgtgagttttatacccgggatgcaaggattgtttgacatatgtgaatcaaaatatgtcatataccacatcaacagaatgaaggacataaaccatattatcatct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30593130 387 + 172585720 ccgtcatgatagtcatcaaatcaatggctgctgggccaacggggtctaggttgaatgcagaataa-agagaactctgtgtatctggatagtggcat-ggtgatatggctgtatttgtcaaaattcattgatgaatttgatatagatctgatcatttcagtatatatgtaaattttacAAGTTTAAAATGCTTACAATAAAAATTTAAATGTTAGTAATAAAAAAGAGTAATTGaaaatattagcaaacaaatccaataacagatccaagcaatacaccatgatgaagtgagttttatatcagggatgcaaggattgtttgacatatgtgaataaaaaaatgtgatataccacatcaacagaatgaaggacataaaccgtattatcatct
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     142840 385 +   1495729 ctatcatgatagtcatcagatcaatggctgctggg-gaaagggggctaagttgaaggcagaaaaa-agagaattttgtgtatcttgatagtggcatgggtgatatgactgtatttgtcaaaattcattgatgaatttgatacagatctgatcatttcag--tatatgtaaattttacAAATTTAAAATGCTTAGAATAAAAATGTAAATGTGAGTAATAAAAAATGGCAATTGaaaattttagcaacaaaatccaacagcacatcaaaacaacacatcataatcatgtgagtttcataccagggatgcaaggattgtttgacgtatgtgaatcaaaatatgtgatatatcacatcaatgaaatgaaggacataagccatagtataatct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     249619 386 -    863181 ctgtcatgatagtcatcaaatcaatggctgctgggcaaagaggggctaggttgaatgcagaataa-agagaactctgtgtatctggatagtggcatgggtgatatggctgtatttgtcaaaattcattgatgaatttgatacagatctgatcatttcag--tatatgtaaattttacAAGTTTAAAATGCTTACAATAAAAATGTAAATGTTAGTAATAAAAAAGAGTAATTGaaaatattagcaaacaaatccaataacagatccaaacaatacaccatgatcaagtgagttttatatcagggatgcaaggattgtttgacatatgtgaataaaaaaatgtgatataccacatcaacagaatgaaggacataaaccgtattatcatct
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29350289 385 -  71996105 ctatcatgatagtcatcagatcaatggctgctggg-gaaagggggctaagctgaacgcagaaaaa-agagaattttgtgtatcttgatagtggcatgggtgatatgagtgtatttgtcaaaattcactgatgaatttgatacagatctgatcatttcag--tatatgtaaattttacAAGTTTAAAACGCTTACAATAAAAATTTAAATGTTAGTAATAAAAAATGGCAATTGaaaattttagcaacaaaatccaacaacatatcaaaacaacacatcacaatcatgtgagtttcataccagggatgcaaggattgtttgacatatgtgaatcaaaatatgtgatataccacatcaacagaatgaaggacataaaccatattatcatct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      48861 387 -    735854 ccgtcatgatagtcatcaaatcaatggctgctgggccaacgggggctaggttgaatgcagaataa-agagaactctgtgtatctggatagtggcat-ggtgatatggctgtatttgtcaaaattcattgatgaatttgatatagatctgatcatttcagtatatatgtaaattttacAAGTTTAAAATGCTTACAATAAAAATTTAAATGTTAGTAATAAAAAAGAGTAATTGaaaatattagcaaacaaatccaataacagatccaagcaatacaccatgatgaagtgagttttatatcagggatgcaaggattgtttgacatatgtgaataaaaaaatgtgatataccacatcaacagaatgaaggacataaaccgtattatcatct
i manLeu1.NW_012107142v1   C 0 I 3993
s cebCap1.NW_016107755v1     558776 383 -   1771730 ctatcatgatagtcatcagatcaatggctgctggaggaagggggactgaggtgaagggagaaga--agggaattttctgtatcttgacagtgccatgggtgatatagctgtatttgtcaaaattcattgaTGAATTTGATAAAAGCTGATTTTTTTCTG--TTTATGTAAATTTAACAAATTTAAAATGCTAATAATAACAATTTTAATGCTAGTGATAAAAAG-AGTAATTAaaaatcttagcaaccaaatccaataacacaccaaaa-aatacactgtgattaaatgagttttataccatggatgcaaggatgatttcacatatgtaaatcaataaatgtgatataccacatcaacagaataaaggacaaaaaccatataatcaact
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17341863 7917 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      93143 1360 -   1829203 M
e macFas5.chr4             29958781 1729 - 170955103 M

a score=116902.000000
s hg38.chr6_GL000254v2_alt  1334363 33 +   4827813 caatagatgcagaaaaagcatttggtgaaacta
s panTro5.chr6             30205234 33 + 175400573 caatagatgcagaaaaagcatttggtgaaacta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30435113 33 + 173848474 caatagatgcagaaaaagcatttggtgaaacta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     150936 33 +   2037526 caatagatgcagaaaaagcatttggtgaaacta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74798546 33 + 122973662 caatagatgcagagaaagcatttggtgaaacta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30593517 33 + 172585720 aaatagatgcaggaaaagcatttggtgaaacta
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     143225 33 +   1495729 caagagatgcagaaaaagtatttggtgaaacta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     250005 33 -    863181 caatagatgcagaaaaagcatttggtgaaacta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29350674 33 -  71996105 caatagatgcagaaaaagtatttggtgaaatta
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1     559159 31 -   1771730 caataagtgctgaaaaagcatttgataagac--
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17341863 7917 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      93143 1360 -   1829203 M
e manLeu1.NW_012107142v1      49248 3993 -    735854 I
e macFas5.chr4             29958781 1729 - 170955103 M

a score=33975.000000
s hg38.chr6_GL000254v2_alt  1334396 7 +   4827813 aacattg
s panTro5.chr6             30205267 7 + 175400573 aacattg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30435146 7 + 173848474 aacattg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     150969 7 +   2037526 aacattg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74798579 7 + 122973662 aacatgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30593550 7 + 172585720 aacattg
i rheMac8.chr4             C 0 N 0
s macNem1.NW_012012100v1     143258 7 +   1495729 aacattg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     250038 7 -    863181 aacattg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29350707 7 -  71996105 aacattg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      53241 7 -    735854 AACATTG
i manLeu1.NW_012107142v1   I 3993 C 0
s cebCap1.NW_016107755v1     559190 7 -   1771730 aacattg
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17341863 7917 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      93143 1360 -   1829203 M
e macFas5.chr4             29958781 1729 - 170955103 M

a score=44725.000000
s hg38.chr6_GL000254v2_alt  1334403 9 +   4827813 cttcttaat
s panTro5.chr6             30205274 9 + 175400573 cttcttaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30435153 9 + 173848474 cttcttaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     150976 9 +   2037526 cttcttaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74798586 9 + 122973662 cttcttaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30465865 9 + 172585720 cttcttaat
i rheMac8.chr4             N 0 C 0
s macNem1.NW_012012100v1     143265 9 +   1495729 cttcttaat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     250045 9 -    863181 cttcttaat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29350714 9 -  71996105 cttcttaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      53248 9 -    735854 TTTCTTAAT
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     559197 9 -   1771730 cttcttaat
i cebCap1.NW_016107755v1   C 0 N 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17341863 7917 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      93143 1360 -   1829203 M
e macFas5.chr4             29958781 1729 - 170955103 M

a score=107496.000000
s hg38.chr6_GL000254v2_alt  1334412 27 +   4827813 gagaactctcaaAGGAGTTCCTCTgac
s panTro5.chr6             30205283 27 + 175400573 gagaactctcaaAGGAGTTCCTCTgac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30435162 27 + 173848474 gagaactctcaaAGGAGTTCCTCTgac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     150985 27 +   2037526 gagaactctcaaAGGAGTTCCTCTgac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74798595 27 + 122973662 aagaactctcaaAGGAGTTCCtttgac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30465874 27 + 172585720 gagaactctcaaAGGAGTCCCtttgac
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     143274 27 +   1495729 gagaactctcaaAGGAGTTCCtttgac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     250054 27 -    863181 aagaactctcaaAGGAATTCCtttgac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29350723 27 -  71996105 gagaactctcaaAGGAGTTCCtttgac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      53257 27 -    735854 AAGAACTCTCAAAGGAGTTCCtttgac
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17341863 7917 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      93143 1360 -   1829203 M
e macFas5.chr4             29958781 1729 - 170955103 M

a score=453867.000000
s hg38.chr6_GL000254v2_alt  1334439 100 +   4827813 aaaggaaccaagaatatacactggggaaagaac-agtctcttaaataaatggtgctgggaaaatgctaccagatgcagaagaatgtaactagacccctgtc
s panTro5.chr6             30205310 100 + 175400573 aaaggagccaagaatatacactggggaaagaac-agtctcttaaataaatggtgctgggaaaatgctaccagatgcagaagaatgtaaccagacccctgtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30435189 100 + 173848474 aaaggagccaagaatatacactggggaaagaac-agtctcttaaataaatggtgctgggaaaatgctactagatgcagaagaatgtaaccagacccctgtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     151012 100 +   2037526 aaaggaaccaagaatatacactggggaaagaac-agtctcttaaataaatggtgctgggaaaatgctaccagatgcagaagaatgtaactagacccctgtc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74798622 100 + 122973662 aaaggaaccaagaatatacactggggaaagaac-agtctcttaaataaatggtgctgagaaaatgctaccagatgcagaagaatgtaactagacccctgtc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30465901  99 + 172585720 aaaggaaccaagaatatacactgggg-aagaac-tgtctcttaaataaatgatgctgggaaaatgctacgagatgcagaagaatgtcactagacccctgtc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     143301 100 +   1495729 aaaggaaccgagaatatacactggggaaagaac-agtatcttaaataaacggtgttgggaaaatgctaccaaatggagaagaatgtcaccagacccctgtc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     250081 100 -    863181 aaaggaaccaagaatatacactggggaaagaac-tgtctcttaaataaatgatgctgggaaaatgctgccagatgcagaagaatgtcaccagacccctgtc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29350750 100 -  71996105 aaaggaaccgagaatacacactggggaaagaac-agtatcttaaataaacggtgctgggaaaatgctaccagatgcagaagaatgtcaccagacccctgtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      53284 100 -    735854 aaaggaaccaagaatatacactggggaaagaac-tgtctcttaaataaatgatgctgggaaaatgctaccagatgcagaagaatgtcactagacccctgtc
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     415375 101 -   1771730 aaaggaaccaagaatttacactgggaaaagaacaagtgccttaaataaacggtgcagggaaaatgctaccatatgccaaagaatgccactagacccttgtc
i cebCap1.NW_016107755v1   N 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17341863 7917 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      93143 1360 -   1829203 M
e macFas5.chr4             29958781 1729 - 170955103 M

a score=396999.000000
s hg38.chr6_GL000254v2_alt  1334539 82 +   4827813 tctcaccatatacaaaaaatcaactcaaaagggattgtagacttaaacgtaagacccaatactgtaaaactactagaagaaa
s panTro5.chr6             30205410 82 + 175400573 tctcaccatatacaaaaaatcaactcaaaagggattgtagacttaaacgtaagacccaatactgtaaaactactagaagaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30435289 82 + 173848474 tctcaccatatacaaaaaatcaactcaaaagggattgtagacttaaacgtaagacccaatactgtaaaactactagaagaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     151112 82 +   2037526 tctcaccatatacaaaaaatcaactcaaaagggattgtagacttcaacgtaagacccaatactgtaaaactactagaagaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74798722 82 + 122973662 tctcaccatatataaaaaatcaactcaaaagggattgtagacttaaatgtaagacccaatactataaaactactagaagaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30466000 81 + 172585720 cctcaccatatac-aaaaatcaactcaaaagggattatagacttaaacgtaagacccaatgctataaaactactagaagaaa
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     143401 81 +   1495729 tctcaccacatac-aaaaatcaactcaaaaaggattgtagacttaaacgtaagatccagaactataaaactactagaagaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     250181 81 -    863181 cctcaccatatac-aaaaatcaacccaaaagggattatagacttaaacgtaagacccaatactataaaactactagaagaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29350850 81 -  71996105 tctcaccatatac-aaaaatcaactcaaaagggattgtagacttaaacgtaagacccagaattataaaactactagaagaaa
i chlSab2.chr17            C 0 I 31
s manLeu1.NW_012107142v1      53384 81 -    735854 cctcaccatatac-aaaaatcaacccaaaagggattatagacttaaacgtaagacccaatactataaaactactagaagaaa
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     415476 80 -   1771730 tctcaccatatac-aaaaatcaa-taaaaataaattaaagacttaaatataagacccaaaactataaaactactagaggagt
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         17349780 79 -  18854210 tctctccaaat---aaaaatcaactcaagatggattaaagacttaaacagaagacctaaacctaaaaaacaactggaagcag
i otoGar3.GL873550         I 7917 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      93143 1360 -   1829203 M
e macFas5.chr4             29958781 1729 - 170955103 M

a score=32386.000000
s hg38.chr6_GL000254v2_alt  1334621 11 +   4827813 acttatggg-aa
s panTro5.chr6             30205492 11 + 175400573 acttatggg-aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30435371 11 + 173848474 acttatggg-aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     151194 12 +   2037526 acttatgggaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74798804 11 + 122973662 acttatggg-aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30466081 11 + 172585720 acatatgga-aa
i rheMac8.chr4             C 0 I 10
s macNem1.NW_012012100v1     143482 11 +   1495729 acatactgg-aa
i macNem1.NW_012012100v1   C 0 I 10
s cerAty1.NW_012002535v1     250262 11 -    863181 acatatggg-ca
i cerAty1.NW_012002535v1   C 0 I 10
s manLeu1.NW_012107142v1      53465 11 -    735854 acatatggg-aa
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     415556 11 -   1771730 gcatggggg-aa
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         17349859 11 -  18854210 acataggag-aa
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      93143 1360 -   1829203 M
e chlSab2.chr17            29350931 31 -  71996105 I
e macFas5.chr4             29958781 1729 - 170955103 M

a score=14867.000000
s hg38.chr6_GL000254v2_alt  1334632  5 +   4827813 -----------acatt
s panTro5.chr6             30205503  5 + 175400573 -----------acatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30435382  5 + 173848474 -----------acatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     151206  5 +   2037526 -----------acact
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74798815  5 + 122973662 -----------acatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30466102  5 + 172585720 -----------acatg
i rheMac8.chr4             I 10 C 0
s macFas5.chr4             29960523  5 - 170955103 -----------acatg
i macFas5.chr4             M 1729 C 0
s macNem1.NW_012012100v1     143503  5 +   1495729 -----------acatg
i macNem1.NW_012012100v1   I 10 C 0
s cerAty1.NW_012002535v1     250283  5 -    863181 -----------acatg
i cerAty1.NW_012002535v1   I 10 C 0
s manLeu1.NW_012107142v1      53476  5 -    735854 -----------acact
i manLeu1.NW_012107142v1   C 0 I 10
s cebCap1.NW_016107755v1     415567  5 -   1771730 -----------acact
i cebCap1.NW_016107755v1   C 0 I 9
s otoGar3.GL873550         17349870 16 -  18854210 aaactcttaagacttt
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      93143 1360 -   1829203 M
e chlSab2.chr17            29350931 31 -  71996105 I

a score=3589783.000000
s hg38.chr6_GL000254v2_alt  1334637 669 +   4827813 a----------gtctaggcaaagattttatggctaagacctctaaagcacaggcaaaaaaagtaaaaatagacaaatgagactatattaagctaaaaagcttctgcacagcaaaggaaacatccaacagaatg-aagcaataacctgttgaat-cgtgaaaatatttac--taagtattcaaccaaccagtatattcatccaattagtatat-tctagactaatatctagaatatacaaggaactcaaaaacttggcagtaaaa----aatacaaataatccaattaaaaagtggacaaaggatctgaatagacattccccaagaggaggcatacaagtggccagcaggtgtgtgaaaaacacccaacatcactaaataccaggaaaatgaaaat-caaact-acaatgagat-at-atcttaccctaaccctagttaagatggctattattaaa------aaataaaaaataatagatgttggtgagcatgtggagaaaggggaa-tgttatacactgttggtggt-catgtaaattagtgcagccattatgggaaacagtagagtgatctctcaaaaaaactgaaactattaatagaactactatctgatgcaacaattctacttctgagtatttatccaaaggaaatgaagtcaatatatcaaaagagtacctgcacacccatgtttattgaagcac
s panTro5.chr6             30205508 679 + 175400573 acaggacatgagtctaggcaaagattttatggctaagacctcaaaagcacaggcaaaaaaagtaaaaatagacaaatgagactatattaagctaaaaa-cttctgcacagcaaaggaaacatccagcagaatg-aagcaataacctgttgaat-cgtgaaaatatttac--taagtattcatccaaccagtatattcatccaattagtatat-tctagactaatatctagaatatacaaggaacttaaaaacttggcagtaaaa----aatacaaataacccaattaaaaagtggacaaaggatctgaatagacattccccaagaggaggcatataagtggccagcaggtgtgtgaaaaacacccaacatcactaaataccaggaaaatgaaaat-caaact-acaatgagat-at-atcttaccctaaccctagttaagatggctattattaaa------aaataaaaaataatagatgttggtgagcacgtggagaaaggggaactgttatacactgttggtggt-catgtaaataagtgcagccattatgggaaacagtagagtgatttctcaaaaaaactgaaactattaatagaactactatctgatgcaacaattctacttctgagtatttatccaaaggaaatgaagtcaatatatcaaaagagtacctgcacacccatgtttattgaagcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30435387 679 + 173848474 acaggacatgagtctaggcaaagattttatggctaagacctcaaaagcacaggcaaaaaaagtaaaaatagacaaatgagactatattaagctaaaaa-cttctgcacagcaaaggaaacatccagcagaatg-aagcaataacctgttgaat-cgtgaaaatatttac--taagtattcatccaaccagtatattcatccaattagtatat-tctagactaatatctagaatatacaaggaacttaaaaacttggcagtaaaa----aatacaaataacccaattaaaaagtggacaaaggatctgaatagacattccccaggaggaggcatataagtggccagcagatgtgtgaaaaacacccaacatcactaaataccaggaaaatgaaaat-caaact-acaatgagat-at-atcttaccctaaccctagttaagatggctattattaaa------aaataaaaaataatagatgttggtgagcacgtggagaaaggggaactgttatacactgttggtatt-catgtaaataagtgcagccattatgggaaacagtagagtgatttctcaaaaaaactgaaactattaatagaactactatctgatgcaacaattctacttctgagtatttatccaaaggaaatgaagtcaatatatcaaaagagtacctgcacacccatgtttattgaagcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     151211 677 +   2037526 acaggacatgagtctaggcaaagattttatggctaagacctctaaagcacaggcaaaaaaagt-aaaatagacaaatgagactatattaagctaaaaagcttctgcacagcaaaggaaacatccaacagaatg-aagcaataacctgttgaat-cgtgaaaatatttac--taagtattcatccaaccagtatattcatccaattagtatat-tctagactaatatctagaatatacaaggaactcaaaaacttggcagtaaaa----aatacaaataatccaattaaaaagtggacaaaggatctgaatagacattccccaagaggaggcatataagtggccagcaggtgtgtg-aaaacacccaacatcactaaataccaggaaaatgaaaat-caaact-acaatgagat-at-atcttaccctaaccctagttaagatggctattattaaa------aaataaaaaataatagatgctggtgagcacgtggagaaaggggaactgttatacactgttggtggt-catgtaaattagtgcagccattatgggaaacagtagagtgatttctc-aaaaaactgaaactattaatagaactactatctgatgcaacaattctacttctgagtatttatccaaaggaaatgaagtcaatatatcaaaagagtacctgcacacccatgtttattgaagcac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74798820 680 + 122973662 acaggacatgagtctgggcaaagattttatggctaagacctcaaaagcacaggcaaaaaaagtaaaaatagacaaatgagactatattaagctaaaaagcttctgcacagcaaaggaaacatccaacagaatg-aagtgataacctgttgaac-agtgaaaatatttac--taagtattcatccaactagtatattcgtccaattagtatat-tctagactaatatctagaatatacaaggaactcaaaaacttagcagtaaaa----aatacaaatgatccaattaaaaagtggacaaaggatctgaatagacattccccaagaggaggcatacaagtggccagcaggtatgtgaaaaacacccaacatcactaaatgccaggaaaatgaaaat-caaact-acaaggagat-at-atcttaccctaaccctagttaggatggctattattaaa------aaataaaaaataatagatgttggtgaacatgtggagaaaggggaactgttatacactgttggtggt-catgtaaattagtgcagccattatgggaaacagtagagtgatttctcaaaaaaactgaaactattaatagaactactatccgatgcaacaattctacttctgggtatttatccaaaggaaatgaagtcagtatatcaaaagagtacctgcacgcccatgtttattgaagcac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30466107 652 + 172585720 ----------ggtctaggtaaagattttatggctaagacctcaaaagcacaggcaaaaaaagttaaaatagacaaattggactatattaaac-aaaaaacttct-----gcaaagcaaacatccaacagaatg-aagagataacctgttgaat-agagaaaatacttgc--taagtattcatccaactagtatattcatccact-agtatat-tctagactaatatctagaatatacaaggaactc-aaaacttagcagtaaaa----aatacaaataatccaattaaaaagtggacaaagggtctgaatagacatttcccaagaggaggcatacaagtggccaacaggtgagtgaaaagtacccaacatcactaaataccaggaaaatgcaaat-caaact-acaatgagat-at-atcttaccct------agttagaattgctattgttaaa------aaaaaaa---taatagatgctggtgagcatgtggagaaagggaaactgttatacactgttggtggt-aatgtaaattagtgcagccattatgggaaacagtagagtgatttctt-aaaagactgcaactattaatggaactactatctgatgcaacaattctacttctgggtatttatccaaaggaaatgaaatcaatatatcaaaagagtacctgtacgcccatgtttattgaagcac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29960528 657 - 170955103 ----------agtctcagcaaagattttatggctaagacctcaaaagcacagaccaaaaaagtaaaaatagacaaatgagactatattaagcttaaaagcttctgcacggcaaaggaaacatccaacagaatg-aagcaataacctgttgaat-agtgaaaatattcag--taagtattcatccaactagtatatccatccaatcagtatat-tatagactaatatctagaatataaaaggaactc-gaaacttagcagtaaaa----aatacaaatactccaattaaaaagtggacaaaggatctgaatagacatatctcaagaggaggcatacaagtggccaacaggtgtgtgaaaaacacccaacctcactaaataccaggaaaatgcaaat-caaact-acaatgagat-at-atcttaccct-------gttagaatggctattgttaaa------aaataaa----aatagatgctggtgagcatgtggagaaaggggaactgttatacactgctggtggt-aatgtaaattagtgcagccattatgggaaacagtagagtgatttctc-aaaaaactgaaactattaatagaactactatctgatgcaacaattctacttctgggtatttatccaaaggaaatgaaatcaacatatcaaaagagtacctgcatgcccatgtttgttgaagcac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     143508 657 +   1495729 ----------agtctcagcaaagattttatggctaagacctcaaaagcacagaccaaaaaagtaaaaatagacaaatgagactatgttaagcttaaaagcttctgcacagcaaaggaaacatccaacagaatg-aagcaataacctgttgaat-agtgaaaatattcag--taagtattcatccaactagtatatccatccaatcagtatat-tatagactaatatctagaatataaaaggaactc-gaaacttagcagtaaaa----aatacaaatactccaattaaaaagtggacaaaggatctgaatagacatatcccaagaggaggcatacaagtggccaacaggtgtgtgaaaaacacccaacctcactaaataccaggaaaatgcaaat-caaact-acaatgagat-at-atcttaccct-------gttagaatggctattgttaaa------aaataaa----aatagatgctggtgagcatgtggagaaaggggaactgttatacactgctggtggt-aatgtaaattagtgcagccattatgggaaacagtagagtgatttctc-aaaaaactgaaactattaatagaactactatctgatgcaacaattctacttctgggtatttatccaaaggaaatgaaatcaacatatcaaaagagtacctgcacgcccatgttttttgaagtac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     250288 664 -    863181 ----------agactaggcaaagattttatggctaagacctcaaaagcacaggcacaaaaagtaaaaatagacaaatgggactatactaagctaaaaagcttctacacagcaaaggaaacacccaacagaatg-aagagataagctgtagaat-agtgaaaatatttgctataagtattcacccaactagtatattcatccaattagtatat-tctagactaatatctagaatatacaaggaactc-aaaacttagcagtaaaa----aatacaaataatccaattaaaaagtggacaaaggatctgaatagatatttcctaagaggaggtatacaagtggccaacaggtgtatgaaaaacacccaacatcactaaataccaggaaaatgtaaat-caaact-acaatgagat-at-atctcaccct------agttagaatggctattattaaa------aaataaaaaataatacatgctggtgagcacgtggagaaaggggaactgttattcactgttggtggt-aatgtaaattagtgcaggcattatgggaaacagtagagttatttctc-aaaaacctgaaactattaatggaactactatcccatgcaacaattctacttctgggtatttatccaagggaaatgaaatcaatatatgaaaagagtacctgcacgcccgtgtttattgaagcac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29350962 657 -  71996105 ----------agtctcagcaaagattgtatggctaagacctcacaagcacagacaaaaaaagtaaaaatagacaaatgagactatattaagctaaaaagcttctgcacagcaaaggaaacatccaaaagaatg-aagcaataacctgttgaat-agcgaaaatattcag--caagtattcatccaactagtatatccatccaattagtatat-tctagactaatatctagaatatacaaggaactc-aaaacttagcagtaaaa----aatacaaatactccgattaaaaagtggacaaaggatctgaatagacatatcccaagaggaggcatacaagtggtcaacaggtatgtgaaaaacacccaacatcactaaataccaggaaaatgtaact-tgaact-acaatgagat-at-atcttaccct-------gttagaatggctattgttaaa------aaataaa----aatagatgctggagagcatgtggagaaaggagaactgttatacactgttggtggt-aatgtaaattagtgcagccattatgggaaacagtagagtgattcctc-aaaaaactgaaactattaatagaactactatctgatgcaacaattctacttctgggtatttatccaaaggaaatgaaatcaacatatcaaaagagtacctgcatgcctatgtttgttgaagtac
i chlSab2.chr17            I 31 C 0
s manLeu1.NW_012107142v1      53491 656 -    735854 ----------agactaggcgaagattttatggctatgacctcaaaaacacaggcagaaaaagtaaaaatagacaaatgggactatattaagctaaaaagcttctacacagcaaaggaaacatccaacagaatg-aagaggtaacctgtagaat-agtgaaaatatttgc--taagtattcacccaactagtatattcatccaattagtatatctctagactaatatctagaatatacaaggaactc-aaaacttagcagtaaaa----aacacaaataatccaattaaaaagt-------ggatcggaatagacatttcccaagaggaggcttacaagtggccaacaggtgtgtgaaaaacacccaacatcactaaataccaggaaaatgtaaat-caaact-acaatgacat-at-atcttaccct-------gttagaatggctattgctaaa------aaataaaaaataatacatgctggtgagcatgtggagaaaggggaactgttacacactgttggtggt-aatgtaaattactgcagccattatgggaaacagtagagtgatttctcaaaaaaactgaaactattaatggaactactatcccatgcaacaattctaattctgggtatttatccaagggaaacgaaatcaatatatgaaaagagtacgtgcacacccatgtttattgaagcac
i manLeu1.NW_012107142v1   I 10 C 0
s cebCap1.NW_016107755v1     415581 613 -   1771730 ----------agtttaggcaaagaccttatgtctaagacttcagaaacacagacaacaaaaataaaaattgacaactgggactatattaagcaaaatagcttcagcacagcaaatgaaactatcaacagaatgaaagaagcagcctgctgaat-agagaaaatatttgc--tatgcattcatccagcaagga--------------------------accaatatctagaatatacaaggaattaaaaaactcagcagt-aaa----aatacaaataatccaattaaaaagtggacaaagggcctgaatagatatttctcaaaaggagacatacaaatgg---------------------ctcaacattattaaatatcaggaaaatgaaattaaaaact-acaataagat-atcattttaccct------ggttagaatgactataattaaa------aaataaaaaataatagatgctgatgagcatgtagagaatggggaactgttacacactgttggtgggaaaagtaagtaagtacagcaattatgaaaaacagtagagagatttttc--aaaaactgaa------aatgggactactatctgatccaacaattccaatactgggtatttatacaaaggaaaagaaatgaatacatcgaaagagtacctgcatcccagagtttattgaagaat
i cebCap1.NW_016107755v1   I 9 C 0
s otoGar3.GL873550         17349886 632 -  18854210 ----------ggtctgggcaagggttttttgtataagtctccaaaagcacaggcaacaaaaatgaaagtagaaaaacg-gagtatattaaacaaaaaagcatctgcacagcaaaagataaaattaactcactg-aaaagggcacctgttgagtgcgggagcatatttgg--aagccatttctctgacaag--------------------------ggacaaatatccagaatacgcaaagtactcaaaagcaaaataataaaatgatgataatgataatccatt----aagtgagcaaagaatttgcatagatatttcttaaaagaatgtgcacaaatggtcaataagtatatgaaaaatgctgaatatctctaaatatcagggaaatgcaagt-caaaatcacaatgagatggc-atcttacccc------agttagaatgggtataaccaaaaacattaaaaaaacaatgactaatgatggcaaggatgtggagaaaagggaactcttatccactgctggtggg-aacatatattagtgcagccattatggaaaac---acagagattcctc-caaaaactaaaacca------gaactactacacaacccaacaatcccactactg----tttatccaaaggaaagaaagtcagtacatcaaggga-cctctgcactgctgtgtttgctgcagcac
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      93143 1360 -   1829203 M

a score=2974810.000000
s hg38.chr6_GL000254v2_alt  1335306 492 +   4827813 tattcacaatagcaaagatgtgaaatcaatgg-tgaatttatcaatgggtgaatgaataaagtaactgtag--ta--ta--tacacaatggaatgcaattcagccat----------aaaaaaagagtgaaatcctgtcagttgcagcaacatggatggaaccagaggtc---atgttaggtgaaatgagccaggcaaggaaacacaaatatcacatgttgtcactcacatgtgtgagctaaagacgttaatctcatggaggttgagagtagaatgaaaattaccagaggttgggaa-----------gaatgtaggggtgggaagatgtagagaggtagattaatgggtacaaatgtac-----------------agttatataa-aaaaaaaagttctaatgttctatagcacagcaggccaactaaagct---aacaattatgtatattta-aaacagctagaag----agtggattttaaatgttcccaacacaaggaaatgatacatgcttgaggtgatggattccctaa---acaccctgacttg
s panTro5.chr6             30206187 492 + 175400573 tattcacaatagcaaagatgtgaaatcaatgggtgaatttatcaatgggtgaatgaataaagtaactgtag--ta--ta--tacacaatggaatgcaattcagccat----------aaaaaaagaatgaaatcctgtcagttgcagcaacatggatggaaccagaggtc---atgttaggtgaaatgagccaggcaaggaaacacaaatatcacatgttgtcactcatatgtgtgagctaaagacattaatctcatggaggtagagagtagaatgaaaattaccagaggttgggaa-----------gaatgtaggggtgggaagatgtagagaggtagattaatgggtacaaatgtac-----------------agttatataa-aaaaaaa-gttttaatgttctatagcacagcaggccaactaaagct---aacaattatgtatattta-aaacagctagaag----agtggattttaaatgttcccaacacaaggaaatgatacatgcttgaggtgatggattccctaa---acaccctgacttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30436066 409 + 173848474 tattcacaatagcaaagatgtgaaatcaatgggtgaatttatcaatgggtgaatgaataaagtaactgtag--ta--ta--tacacaatggaatgcaattcagccat-----------aaaaaagaatgaaatcctgtcagttgcagcaacatggatggaaccagaggtc---atgttaggtgaaatgagccaggcaaggaaacacaaatatcacatgttgtcactcatatgtgtgagctaaagacattaatctcatggaggtagagagtagaatgaaaattaccagtggttgggaa-----------gaatgtaggggtgggaagatgtagagaggtagattaatggg--------------------------------------------------------------------------------------------------------ta-aaacagctagaag----agtggattttaaatgttcccaacacaaggaaatgatacatgcttgaggtgatggattccctaa---acaccctgacttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     151888 491 +   2037526 tattcacagtagcaaagatgtgaaatcaatgggtgaatttatcaatgggtgaatgaataaagtaactgtag--ta--ta--tacacaatggaatgcaattcagccat----------aaaaaaagaatgaaatcctgtcagttgcagcaacatggatggaaccagaggtc---atgttaggtgaaatgagccaggcaaggaaacacaaatatcacatgttgtcactcatatgtgtgagctaaagacgttaatctcatggaggtagagagtagaatgaaaattaccagaggttgggaa-----------gaatgtaggggtgggaagatgtagagaggtagattaatgggtacaaatgtac-----------------agttatatta-aaaaaaa-gttctaatgttctatagcacagcaggccaactaaagct---aacaattatgtatattta-aaacagctagaag----agtggattttaaatattcccaacacaaggaaatgatacatgcttgaggtgatggatt-cctaa---acaccctgacttg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74799500 493 + 122973662 tattcacaatagcaaagatgtgaaatcaatgggtgaatttatcaatgggtgaatgaataaagtaactgtag--ta--ta--tatacagtggaatgcaattcagccat----------agaaaaagaaggaaatcctgtcagttgcagcaacatggatggaaccagaggtc---atgttaggtgaaatgagccaggcaaggaaacacaaatatcacatgttgtcactcatatgtgtgagctaaagaggttaatctcatggaggtagagagtagaatgaaaattaccagaggttgagaa-----------gaatgtaggggtgggaagatgtagagaggtagattaatgggtacaaatgtac-----------------tgttatataa-aaacaaaagttctaatgttctatagcacagcaggccaactaaagct---aacaattatgtatattta-aaacagctagaag----aatggattttaaatgttcccaacacaaggaaatgatacatgcttgaggtgatggattccctaa---acaccctgacttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30466759 479 + 172585720 tattcacaaaagcaaagatgtgaaatcaatgggtgaa----------------tgaataaagtaactgtag--tatgta--tatacaatggaatgcaatttagtcatt---------taaaaaagaatgaaatcctgtcagttgcagcaacatgaatagaaccagaggtc---atgttaggtgaaataagccaggcaaggaaagacaaatatcacacattgtcactc--atgcgtgagctaaaaacattaatctcgtggaagtagagagtagaatgacagttaccagaggttgggaa-----------gaacgtaagggtaggaagatgtagagaggtagattaataggtacaaacattc-----------------agttatatacaaaaaataagttctaatattctaaagcacagcaggccaactaaagct---aacaaaaatgtatatttc-aaatagctagaag----agtggattttaaatgttcccaacacaaagaaaagataaatgcttgaggtgatggattccccaa---acaccctgacttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29961185 496 - 170955103 tattcacaatagcaaagatgtgaaatcaatgggtgaatttatcaatggatgactgagtaaagtaactgcag--ta--ta--tacacaatggaatgcaattcagccatt-------aaaaacagagaatgaaatcctgtcagttgcagcaacatgcatggaaccagaggtc---atgttaggtgaaataagccaggcaagaaaagacaaatatcacatgttgtcactcatatgtgtgagctaaaaaagttaatctcatggaggtagagagtagaatgacagttaccagaggttgagaa-----------gaatgtaggggtgggaatatgtagaaaggtagattaatgggtacaaatgtac-----------------agttaaatac-aaaaataagttctaatgttctaaagcacagcaggccaactaaagct---aaaaactatgtgtatttc-aaatagctagaag----agtggattttaaatgttcccgacacaaagaaaagataaatgcttgaggcgatggattccctaa---acaccctgacttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     144165 503 +   1495729 tattcacaatagcaaagatgtgaaatcaatgggtgaatttatcaatggatgactgagtaaagtaactgcag--ta--ta--tacacaatggaatgcaattcagccattaaaaaaaaaaaaaaaagaatgaaatcctgtcagttgcagcaacatgcatggaaccagaggtc---atgttaggtgaaataagccaggcaagaaaagacaaatatcacatgttgtcactcatatgtgtgagctaaaaaagttaatctcacggaggtagagagtagaatgacagttaccagaggttgagaa-----------gaatgtaggggtgggaatatgtagaaaggtagattaatgggaacaaatgtac-----------------agttaaatac-aaaaataagttctaatgttctaaagcacagcaggccaactaaagct---aaaaactatgtgtatttc-aaatagctagaag----agtggattttaaatgttcccgacacaaagaaaagataaatgcttgaggcgatggattccctaa---acaccctgacttg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     250952 476 -    863181 tattcacaaaagcaaagatgtgaaatcaatgggtgaa----------------tgaataaagtaactgtag--ta--ta--tacacaatagaatgcaattcagccatt---------taaaaaagaataatatcctgtcagttgctcca----ggatggaaccagaggtc---atattaggtgaaataagccaggcaaggaaagacaaatatcacacattgtcactcatatatgtgagctaaaaatgttaatatcgtggaggtagagtgtagaatgacagttaccagaggttgggaa-----------gaacgtaggggtgggaagatgtagagaggtagattaatgggtacaaacattc-----------------agttatacagaaaaaataagttctagtgttctagagcacagcaggccaactaaagct---aacaaaaatgtatatttcaaaatagctagaag----cgtggattttaaatgttcccaatacaaagaaaagataaatgtttgaggcgatgggttccccaa---acaccctgagttg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29351619 500 -  71996105 tattcacaatagcaaagatgtgaaattaatgggtgaatttatcaatggatgaatgagtaaagtaactgcag--ta--ta--tacacaatggaatgcaattcagccatt----aaaaaaaaaaaagaatgaaatcctgtcagttgcagcaacatggatggaaccagaggtc---atgttaggtgaaataagccaggcaagaaaagacaaatatcacatgttgtcactcatatgtgcgagctaaaaaagttaatctcacagaggtagagagtagaatgacagttaccagaggttgggaa-----------gaacgtaggggtgggaatatgtagaaaggtagattaatgggtacaaatgtac-----------------agttatatataaaaaataagttctaatgttccaaagcacaacaggccaactaaagtt---aaaaattatgtgtatttc-aaatagctagaag----agtagattttaaatgttcccaacgcaaagaaaagataaatgcttgaggcaatggattccccaa---acaccctgacttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      54147 491 -    735854 tattcacaaaagcaaagatgtgaaatcaatgggtgaatttatcactgggcgaatgaataaagtaactgtag--ta--ta--aacacaatggaatgcaattcagccatt---------taaaaaagaatgaaatcctatcagttgctcca----ggatggaaccagaggtc---atgttaggtgaaataagccaggcaaggaaagacaaatatcacacattgtcactcatatatgtgagctaaacatgttaatctcgtggatggagagagtagaatgacagttaccagaggttgggaa-----------gaacgtaggggtgggaagatgtagaaaggtagattaatgggtacaaatattc-----------------agttatatagaaaaaataagttctaatgttctgaagcacagcaggccaactaaagct---aaccaaaatgtatatttcaaaatagctagaag----agtggattttaaatgttccc-acacaaagaaaagataaatgtttaaggcgatggattccccaa---acaccctgagttg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      94503 503 -   1829203 tattcacaatagcaaagatgtgaaattaatgggtgaatttatcaatggatgaatgagtaaagtaactgcag--ta--ta--tacacaatggaatgcaattcagccattaaaaaaaaaagaagaagaatgaaatcctgtcagttgcagcaacatggatggaaccagaggtc---atgttaggtgaaataagccaggcaagaaaagacaaatatcacatgttgtcacttatatgtgtgagctaaaaaagttaatctcatggaggtagagagtagaatgacagttaccagaggttgggaa-----------gaatgta-gggtgggaatatgtagaaaggtagattaatgggtacaaatgtac-----------------agttatatacaaaaaataagttttaatgttctaaagcacagcaggccaactaaagct---aaaaattatgtgtatttc-aagtagctagaag----agtgggttttaaatgttcccgacacaaagagaagataaatgcttgaggtgatggattccctaa---acaccctgacttg
i colAng1.NW_012115577v1   M 1360 C 0
s cebCap1.NW_016107755v1     416194 516 -   1771730 tattcacagtagtaaaaatacgaaatcagtgggtgaatttgtcagtgggtgaatggataaagaaactgtgg--ta--tatttacacagcggaatgcaattcagccat-----------aagaaataatgaaatcctgccagttgcagcaacatggatggaactggaggtcattatgttaggtgacataacccaaacaaggaaatacaagtattaaatgttatccctcatacgtgcaagctaagaaggttaatctcatggagatagagagtagaatgacagttacccaaggctggcaa-----------gggtgtaggggtgggaagatatagagaggaagcttaatgagtgcaaatgctcccattatatagaaaaaatgtcacatagaaaagataagctctaatgtttaatagcacggtaggccgactacagtt---aacaaaaatgtacatttcaaaatagctaggag----attagatttcaaatgttcccaacacaaagaaatgataagtgcttgaggtgatggatatcctaa---atatcctgacttg
i cebCap1.NW_016107755v1   C 0 I 69
s otoGar3.GL873550         17350518 464 -  18854210 tgctcacaacaacaaagatatggaatcaacctaagtgtctatcagtggataagtgggtaaagaaaacattgtcta--ta--cacacaggagaatactatttgaccat-----------aagaagaaataaaaccctttt----------------atagaataggaagtcatcatgttaagtgaaataatccaggcacggagagacagatgtcacaggtt----ctcatacatg-gggctgaaaaagttgatctcctggaggtagagagtagaatgagagttactagagactgggaaggggggtggagggatgaagagggaattagatgaagagagggaggttaatggacacaa-----------------------------------------------aatgtttaataacaaagt-----gattagagttatcaacagtgttgtatgtttcaaaatggctagaagagtaagtaaatgtgaaatgttcccaacacaaagcaatgataaacgcttaaggggatggattttctaaatcatacgctgactca
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I

a score=387991.000000
s hg38.chr6_GL000254v2_alt  1335798 77 +   4827813 attattccacattctgtgtatgtatcaaatgatcacatgtgccccataaacatata-aaatgttatgtattaccttta
s panTro5.chr6             30206679 77 + 175400573 attattccacattctgtgcatgtatcaaatgatcacatgtgccccataaacatata-aaatgttatgtattaccttta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30436475 77 + 173848474 attattccacattctgtgcatgtatcaaatgatcacatgtgccccataaacatata-aaatgttaggtattaccttta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     152379 76 +   2037526 attattccacattctgtgtatgtatcaaatgatcacatgtg-cccataaacatata-aaatgttatgtattaccttta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74799993 77 + 122973662 attattccacactctgtgcatgtatcaaatgatcacatgtgccccataaacatatacaaatgttatgtattaCCTTT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30467238 77 + 172585720 attattccacattctgtgcatgtgtcaaatgatcacatgtgccccataaacatgtgcaaatgttatgtattacttta-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29961681 77 - 170955103 actactccacattccgtgcatgtgtcaaatgatcacgtgtgccccataaatatgtgcaaatattatgtattacttta-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     144668 77 +   1495729 actactccacattccgtgcatgtgtcaaatgatcacgtgtgccccataaacatgtacaaatattatgtattacttta-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     251428 75 -    863181 attattccatattctgagcatgcatcaaa-gatcacatgtgccccataaacatgtgtaaatgttatgtattacttt--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29352119 76 -  71996105 attactctacattccgtgcatgtgtcaaatgatcacatgtgccccataaacatgtacaaatgctatgtattaCTTT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      54638 75 -    735854 attattccactttctgagcatgtatcaaa-gatcacatgtgccccataaacatgtgcaaatgttatgtattaccta--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      95006 76 -   1829203 attactccacattccgtgcatgtgtcaaatgatcacatgtgccccataaacatgtacaaatgttatgtattaCTTT--
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550         17350982 74 -  18854210 atcattatacattctgtgcatgtatcaaaatatcatatgtatcccgt--ataggtagaaataatacgtgtcaatga--
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e cebCap1.NW_016107755v1     416710 69 -   1771730 I

a score=300253.000000
s hg38.chr6_GL000254v2_alt  1335875 64 +   4827813 aaaaaTATTTTTAA----AATAAACTCAACACAATATGGGACATTTTAAAAAGTACAAAAA-T-ATGACC
s panTro5.chr6             30206756 64 + 175400573 aaaaaTATTTTTAA----AATAAACTCAACACAATATGGGACATTTTAAAAAGTACAAAAA-T-ATGACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30436552 64 + 173848474 aaaaaTATTTTTAA----AATAAACTCAACACAATATGGGACATTTTAAAAAGTACAAAAA-T-ATGACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     152455 63 +   2037526 aaaaaTATTTTTAA----AATAAACTCAACACAATATGGGACATTTT-AAAAGTACAAAAA-C-ATGACC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74800070 64 + 122973662 AAAAATATTTTTAA----AATAAACTCAACACAATATGGGACATTTTAAAAAGTACAAAAA-T-ATGACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30467315 48 + 172585720 ------------aa----aata-----aaaaCAATATGGGATATTTTAAATGGTACAAAAATT-ATGAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29961758 52 - 170955103 ------------aa----aataaaCTCAACACAATATGGGACATTTTAAACAGTACAATAA-T-ATGACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     144745 52 +   1495729 ------------aa----aataaaCTCAACACAATATGGGACATTTTAAACAGTACAATAA-T-ATGACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     251503 53 -    863181 ------------aa----aacaaaCTCAACACAATATGGGACATTTTAAACGGTACAAAAATA-ATGAGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29352195 52 -  71996105 ------------AC----AACAAACTCAACACAATATGGGACATTTTAAACAGTACAAAAA-T-ATGACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      54713 53 -    735854 ------------aa----aacaaaCTCAACACAATATGGGACATTTTAAACAGTACAAAAA-TAATGAGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      95082 52 -   1829203 ------------AC----AACAAACTCAACACAATATGGGACATTTTAAACAGTACAAAAA-T-ATGACC
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     416779 64 -   1771730 aaaaaTATTTTAAA----TATAAACTGAACACAATATGGGTTATTAAAAAGGGTACTAAAT-T-ATTAAC
i cebCap1.NW_016107755v1   I 69 N 0
s otoGar3.GL873550         17351056 67 -  18854210 --aaaaaTTAAAAAACCCAACAAACTAAGCACAATGTGGGCTATTTAAAAAGGTACAAAAATT-ATTGAC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I

a score=225358.000000
s hg38.chr6_GL000254v2_alt  1335939 38 +   4827813 ATGATAAAAATTG-GCAAATATTTCCTTTTTATTAAGAT
s panTro5.chr6             30206820 38 + 175400573 ATGATAAAAATTG-GCAAATATTTCCTTTTTATTAAGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30436616 38 + 173848474 ATGATAAAAATTG-GCAAATATTTCCTTTTTATTAAGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     152518 37 +   2037526 ATGATAAAAATTG-GCAAATATTTCC-TTTTATTAAGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74800134 38 + 122973662 ATGATAAAAATTG-GCAAATATTTCCTTTTTATCAAGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30467363 39 + 172585720 ATGGTAAAAATTTGGCAAATATTTTCTTTTTATTAAGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29961810 38 - 170955103 ATGATAAAAAATT-GCAAATATTTCCTTTTTATTAAGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     144797 38 +   1495729 ATGATAAAAAATT-GCAAATATTTCCTTTTTATTAAGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     251556 39 -    863181 ATATTAAAAATTTGGCAAATATTTTCTTTTTATTAATAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29352247 38 -  71996105 ATGATAAAAAATT-GCGAATATTTCCTTTTTATTAAGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      54766 39 -    735854 ATATTAAAAATTTGGCAAATATTTTCTTTTTATTAATAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      95134 38 -   1829203 ATGATAAAAAATT-GCAAATATTTCCTTTTTATTAAGAT
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     562370 39 -   1771730 ATGATAAAAATTTGGCAAATATTCCCTTTTTATTAAGAT
i cebCap1.NW_016107755v1   N 0 I 27
s otoGar3.GL873550         17351123 37 -  18854210 ATGATAAAA--TGGACACATAAATTCCCTTTAATTAGAT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I

a score=76189.000000
s hg38.chr6_GL000254v2_alt  1335977 19 +   4827813 CCACTT--------TGTAAGTTCAAGC
s panTro5.chr6             30206858 19 + 175400573 CCACTT--------TGTAAGTTCAAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30436654 19 + 173848474 CCACTT--------TGTAAGTTCAAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     152555 19 +   2037526 CCACTT--------TGTAAGTTCAAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74800172 19 + 122973662 CCACTT--------AGTAATTTCAAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30467402 27 + 172585720 CAACTTTTATATTCTGTAAGTCCCAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29961848 19 - 170955103 CAACTT--------TGTAAGTTCAAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     144835 19 +   1495729 CAACTT--------TGTAAGTTCAAGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     251595 27 -    863181 CAACTTTTATCTTTTGTAAGTCCCAGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29352285 19 -  71996105 CAAC--------TGTGTAAGTTCAAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      54805 27 -    735854 CAACTTTTATCTTTTGTAAGTCCCAGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      95172 19 -   1829203 CAACTT--------TGTAAGTTCAAGC
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550         17351160 27 -  18854210 CAACTTTCTTTTCCTATAAATGTAAGG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e cebCap1.NW_016107755v1     562409 27 -   1771730 I

a score=237079.000000
s hg38.chr6_GL000254v2_alt  1335996 34 +   4827813 AGAATGAAGCCCATACAGCATCAGAAGAAGTGGC
s panTro5.chr6             30206877 34 + 175400573 AGAATGAAGCCCATACAGCATCAGAAGAGGTGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30436673 34 + 173848474 AGAATGAAGCCCATACAGCATCAGAAGAGGTGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     152574 34 +   2037526 AGAATGAAGCCCATACAGCATCAGAAGAGGTGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74800191 34 + 122973662 AGAATGAAGCCCATACAGCATCAGAAGAGGTGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30467429 34 + 172585720 AGAATGAAGCCCATACAGCATCAGAGGAGGTGGC
i rheMac8.chr4             C 0 N 0
s macFas5.chr4             29961867 34 - 170955103 AGAATGAAGCCCATTCAGCATCAGAAGAGGTGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     144854 34 +   1495729 AGAATGAAGCCCATTCAGCATCAGAAGAGGTGGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     251622 34 -    863181 AGAATGAAGCCCATACAGCATCAGAGGAGGTGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29352304 34 -  71996105 AGAATGAAGCCCATACAGCATCAGAGGAGGTGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      54832 31 -    735854 AGAACGAAGCCCATACAGCAT---AAGAGGTGGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      95191 34 -   1829203 AGAATGAAGCCCATACAGCATCAGAAGACGTGGT
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     562436 34 -   1771730 AGAATGAAGCCCATGGAGCATCAGAAGGAGTTGC
i cebCap1.NW_016107755v1   I 27 C 0
s otoGar3.GL873550         17351187 34 -  18854210 AAAATAAAGGCTACACAGCAGCGGAAGTGGTTGC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I

a score=2913883.000000
s hg38.chr6_GL000254v2_alt  1336030 468 +   4827813 TCTCCT--GAG--AGAATCTTCTCCCCAGT-TAGAAAGGCAGAAACAGAATTCCTGGAGAAAGTAAGACTCTGGAGAACTGCATAGCACCTCTtcttggggtctggggttacccagatgtagggagggttcaccttctgggaaaaactaaacgttggttcttgttcttttttgttcttattgcaagaccaaaaattgagaaaaccaagagaaagcaccaagccaaagggatatactc--------------------------------tcttttattttttagaatatccactaccaaggatgatccaCGCtgttatgagacgaattgtgtccctccccaaccgaaattcatatgttggagtcctatgttgagaagacaga--------agtggccatctacaagccaaggagagaggcctcaggaaaaagcaaccctgcagcaccttgacc-tgcacctgtagcctccagaactgtgagacaatacatatttattattttactcacccagca
s panTro5.chr6             30206911 467 + 175400573 TCTCCT--GAG--AGAATCTTCTCCCCAGT-TAGAAAGGCAGAAACAGAATTCCTGGAGAAAGTAAGACTCTGGAGAACTGCACAGCCCCTCTtcttggggtctggggttacccagatgtagggagggttcaccttctgggaaaaactaaacgttggttcttgttctttttt-ttcttattgcaagaccaaaaattgagaaaaccaagagaaagcaccaagccaaaggggtatactc--------------------------------tcttttattttttagaatatccactaccaaggatgatccaCACtgttatgagatgaattgtgtccctccccaaccgaaattcatatgttgaagtcctatgttgagaagacaga--------agtggccatctacaagccaaggggagaggcctcaggaaaaagcaaccctgcagcaccttgacc-tgcacctgtagcctccagaactgtgagacaatacatatttattattttactcacccagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30436707 466 + 173848474 TCTCCT--GAG--AGAATCTTCTCCCCAGT-TAGAAAGGCAGAAACAGAATTCCTGGAGAAAGTAAGACTCTGGAGAACTGCACAGCACCTCTtcttggggtctggggttacccagatgtagggagggttcaccttctgggaaaaactaaacgttggttcttgttcttttt--ttcttattccaagaccaaaaattgagaaaaccaagagaaagcaccaagccaaaggggtatactc--------------------------------tcttttattttttagaatatccactaccaaggatgatccaCACtgttatgagatgaattgtgtccctccccaaccgaaattcatatgttgaagtcctatgttgagaagacaga--------agtggccatctacaagccaaggagagaggcctcaggaaaaagcaaccctgcagcaccttgacc-tgcacctgtagcctccagaactgtgagacaatacatatttattattttactcacccagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     152608 465 +   2037526 TCTCCT--GAG--AGAATCTTCT-CCCAGT-TAGAAAGGCAGAAACAGAATTCCTGGAGAAAGTAAGACTCTGGAGAACTGCACAGCACCTATtcttggggtctggggttacccagatgtagggagggttcaccttctgggaaaaactaaacgttggttcttgttcttttttgttcttattgcaaga-caaaaattgag-aaaccaagagaaagcaccaagccaaagggatatactc--------------------------------tcttttattttttagaatatccactaccaaggatgatccaCGCtgttatgagatgaattgtgtccctccccaaccgaaattcatatgttgaagtcctatgttgagaagacaga--------agtggccatctacaagccaaggagagaggtctcaggaaaaagcaaccctgcagcaccttgacc-tgcacctgtagcctccagaactgtgagacaatacatatttattattttactcacccagca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74800225 467 + 122973662 TCTCTT--GAG--AGAATCTTCTCCCCAGT-TAGAAAGGGAGAAGCAGAATTCCTGGAGAAAGTAAGACTTTGGAGAACTGCACAGCACCTCTTCTTGGtgtcttgggttacccagacttagggagggttcaccttctgggaaaaactaaacgttgattcttgttctttttttttcttattgcaagaccaaaaattcagaaaaccaagagaaagcatcaagccaaagggatatactc--------------------------------tcttttattttttagaatatccactaccaaggatgatccaCGCtgttatgagatgaattgtgtccctccctaaccgaaattcatatgttgaagccctatgtggagaagacaga--------agtgaccatctacaagccaaggagag-ggcctcagaacaaagcaaccctgcagcaccttgacc-tgcacctgtagcctccagaactgtgagacaatacatatttattattttactcacccagcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30595487 453 + 172585720 TCTCCT--GAG--AGAATCTTCTTCCCAGT-TAAAAAGGTGGAAACAGAATTCCTGGAGAAAGTAAGGCTTTGGAGAACTG--TA-CACCTCTTCTTGGTGTCTGGGATTACCCAGACTTAG-----------------------ACAAAACTTTGCTTCTTGTCCTTTTTTGTTCTTATGGCAAGACCAAAATTTCAAAAAACCAAGATGAAGCACCAAGCTAAAGGGATATTCTCTCTCTCTCTC----------------------TTTTTTTTTTTTTAGAATATCCACTACCAAGGATGATCCACGCtgttatgagatgaattgtgtccctccccaaccaaaattcatatgttgaagtcctGTGTtgagaagacaga--------agtgactatctacaagccaaggagagaggcctcagaaaaaagcaactctgcagcagcttgaccttgcacctgtagcctccagaactgtgagacaatacatatttattatttcactcacccagct
i rheMac8.chr4             N 0 C 0
s macFas5.chr4             29961901 459 - 170955103 TCTCCT--GAG--AGAATCTTCTTCTCAGT-TAAAAAGGCAGAAACAGAATTCCTGGAGAAAGTAAGACTTTGGAGAACTGCACA-CACCACTTCTCGGTGTCTGGGATTACccagacttagggagggttcaccttctgggaaaaactaaacattggttcctgttcttttttgt---------aagaccacaatttcagaaaactaagagaaagcaccaggccaaagggatatactctc--------------------------------ttttatattttagaatatccaccaccaagtatgatccaTGCtgttatgagatgaattgtgtccctccccagccaaaattcatatgttgaagtcctatgttgagaagagaga--------agtggctgtctacaagccaaggagagaggcctcagaagaaaacaaccctgcagcacgttgaccttgcacctgcaggctccagaactgtgggaaaatatatatttattatttcactcacccagct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     144888 459 +   1495729 TCTCCT--GAG--AGAATCTTCTTCTCAGT-TAAAAAGGCAGAAACAGAATTCCTGGAGAAAGTAAGACTTTGGAGAACTGCACA-CACCACTTCTCGGTGTCTGGGATTACccagacttagggagggttcaccttctgggaaaaactaaacattggttcctgttcttttttgt---------aagaccacaatttcagaaaactaagagaaagcaccaggccaaagggatatactctc--------------------------------ttttatattttagaatatccaccaccaagtatgatccaTGCtgttatgagatgaattgtgtccctccccagccaaaattcatatgttgaagtcctatgttgagaagagaga--------agtgactgtctacaagccaaggagagaggcctcagaagaaaacaaccctgcagcacgttgaccttgcacctgcaggctccagaactgtgggaaaatatatatttattatttcactcacccagct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     251656 500 -    863181 TCTCCT--GAG--AGAATCTTCTTCCCAGT-TAAAAAGGCAGAAACAGAATTCCTGGAGAAAGTAAGACTTTGGAGAACTGCATA-CACCTCTTCTTGGTGTCTGGGATTACCCAGACTTAGGGAGGGTTCATCTTCTGGGAAAAACAAAACTTTGCTTCTTGTCCTTTTTTGTTCTTATGGCAAGACCAAAATTTCAGAAAACCAAGATGAAGCACCAAGCTAAAGGGATGTActctctctctctctctctctctcttttttttttttttttttttttttAAGAATATCCACTACCAAGGATGATCCACGCtgttatgagacgaattgtgtccctccccaaccaaaattcatatgttgaagtcctGTGTtgagaagacaga--------agtggctgtctacaagccaaggagagaggcctcagaaaaaagcaactctgcagcaccatgaccttgtacctgtagcctccagaactgtgagacaatacatatttattattttactcacccagcc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29352338 460 -  71996105 TCTCCT--GAG--AGAATCTTCTTCCCAGT-TAAAAAGGCAGAAACAGAATTCCTGGAGAAAGTAAGACTTTGGAGAACTGCACAGCACCACTTCTCGGTGTCTGGGATTACCCAGACGTAGGGAGAGTTCACCTTCTGGGAAAAACTAAACGTTGGTTCCTGTTCTTTTTTGT---------AAGACCACAATTTCAGAAAACTAAGAGAAAGCATCAGGCCAAAGGGATATACTC--------------------------------TTTTTTATATTTTAGAATATCCACCACCAAGTATGATCCACGCtgttatgagatgaattgtgtccctccccagccaaaattcatatgttgaagtcctatgttgagaagagaga--------agtggctgtctacaagccaaggagagaggcctcagaagaaatcaaccctgtagcaccttgaccttgcacctgcaggctccggaactgtgggaaaatatatatttatcatttcactcacccggcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      54863 461 -    735854 TCTCCT--GAG--AGAATCTTCTTCCCAGT-TAAAAAGGCGGAAACAGAATTCCTGGAGAAAGTAAGGCTTTGGAGAACTGCA---CACCTCTTCTTGGTGTCTGGGATTACCCAGACTTAG-----------------------ACAAAACTTTGCTTCTTGTCCTTTTTTGTTCTTATGGCAAGACCAAAATTTCAAAAAACCAAGATGAAGCACCAAGCTAAAGGGATATtctctctctctctctctctctT--------------TTTTTTTTTTTTTAGAATATCCACTACCAAGGATGATCCACGCtgttatgagatgaattgtgtccctccccaaccaaaattcgtatgttgaagtcctGTGTTGAGAagagaga--------agtggctgtctacaagccaaggagagaggcctcagaaaaaagcaactctgcagcagcttgaccttgcacctgtagcctccagaactgtgagacaatacatatttattatttcactcacccagct
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      95225 459 -   1829203 TCTCCT--GAG--AGAATCTTCTTCCCAGT-TGAAAAGGCAGAAACAG-ATTCCTGGAGAAAGTAAGACACAGGAGAACTGCACAGCACCACTTCTCGGTGTCTAGGATTACCCAGACGTAGGGAGAGTTCACCTTCTAGGAAAAACTAAACGTTGGTTCCTGTTCTTTTTTGT---------AAGACCACAATTTCAGAAAACTAAGAGAAAGCATCAGGCCAAAGGGATATACTC--------------------------------TTTTTTATATTTTAGAATATCCACCACCAAGTATGATCCACGCtattatgagatgaattgtgtccctccccagccaaaattcatatgttgaagtcctatgttgagaagagaga--------agtggccatctacaagccaaggagagaggcctcagaagaaagcaaccctgcagcacattgaccttgcacctgcaggctccagaactgtgggaaaatacatatttattatttcactcacccggcc
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     562470 475 -   1771730 TCTCCT--GAGACAGAATGTTCTTCCCTTTAAAAAAAGGCAGAAACAGTGTCACTGGAGGAAGCAGGAGTTTGGAGAACTACACAGC-CCACgtcttagtgtctgggattacccagacttagggatagttcactttctgggaagaactaaactttggttccctttcttttttgttcttattgcaaaa-caaaatttcagaaaactaagagaaagtgtttagccaaagggatatggtc--------------------------------tcttttattttttagaatatttactgccaaggataatccagaGTGTTAGGAGATGAACTGTGCTCCTCCATCACCAAAATCCACAGGCTGAAGTCCTGTGTtgagaagacaga---agaatagtggccatctacaagccaaggagtgagacctcagaagaaatcaacactgcagcaccttgatcttgcacctgtagcctccagaattgtaagaaaataaacatgtattattgaaatcacccagcc
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         17351221 465 -  18854210 TCTACTGGGAG--AGAATCCTCTTCCCAGT-TAAAAAGACAGAATCAGAGTCACTGGAGAAAGCAGGGCTTGGGAGCAGTGCACAGCACTGGGTCTTGGTGTCCTggggcagtcaggcttagggagggttcacctcacaggtagaactaaactatggctc---taccttcttgttcttattgtaagacaaaaatttcagaatac-aagagatggagtcaggttaaagggaggtgcta--------------------------------tctcttattttttagaatatgctctgccaaggatgatccagactattatgggctcaactgtgtccccccaccaccaaaattcctatgttgaagtcgtaTGTTGAGCagatagagagagaa-gatcattctctagaactcaagaagagaggccaga-aagaaatcaaccctgccacatcttaatc--------gtggactccagcactgtgcgaccataaatttctcttatttaaatcacctaTGA
i otoGar3.GL873550         C 0 I 917
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I

a score=414188.000000
s hg38.chr6_GL000254v2_alt  1336498 54 +   4827813 tgtggtac-tttgttatggtagccctagcaaattaaaacaGAAATATTACCTTTT
s panTro5.chr6             30207378 54 + 175400573 tgtggtac-tttgttatggtagccctagcaaattaaaacaGAAATATTACCTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30437173 54 + 173848474 tgtggtac-tttgttatggtagccctagcaaattaaaacaGAAATATTACCTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     153073 54 +   2037526 tgtggtac-tttgttatggtagccctagcaaattaaaacaGAAATATTACCTTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74800692 54 + 122973662 tgtggtac-ttagttatggcagccctagcaaattaaaacaGAAATATTACCTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30595940 54 + 172585720 tgtggtac-tttgttatggcagccctagcaaattaaaacaGAAGTATTACCTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29962360 54 - 170955103 tgtggtac-tttgttatggcagccctagtaaattaaaacaGAAATATTACCTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     145347 54 +   1495729 tgtggtac-tttgttatggcagccctagtaaattaaaacaGAAATATTACCTTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     252156 54 -    863181 tgtggtac-tttgttatggcagccctagcaaattaaaacaGGAGTATTACCTTTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29352798 54 -  71996105 tgtggtac-tttgttatggcagccctagcaaattaaaacaGAAATATTACCTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      55324 54 -    735854 tgtggtac-tttgttatggcagccctagcaaattaaaacaGAAGTATTACCTTTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      95684 54 -   1829203 tgtggtac-tttgttatggcagccctaacaaattaaaacaGAAATATTACCTTTT
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     562945 54 -   1771730 tgtggtac-tttgttattgcagccctagaaaattaaaacaGAAATATTACATTTT
i cebCap1.NW_016107755v1   C 0 N 0
s otoGar3.GL873550         17352603 55 -  18854210 TGTGGTACTTTTGTTAGAATAGCCCTAGCATATTAAAAGAGAGATATTACCTCTT
i otoGar3.GL873550         I 917 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I

a score=206779.000000
s hg38.chr6_GL000254v2_alt  1336552 34 +   4827813 CTACTCTGTCCTATGTATGAACATGAGAC-TTTTT
s panTro5.chr6             30207432 34 + 175400573 CTACTCTGTCCTATGTATGAACATGAGAC-TTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30437227 34 + 173848474 CTACTCTGTCCTATGTATGAACATGAGAC-TTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     153127 34 +   2037526 CTACTCTGTCCTATGTATGAACATAAGAC-TTTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74800746 34 + 122973662 CTACCCTGTCCTATGTATCAACATGTGAT-TTTTT
i nomLeu3.chr1a            C 0 I 327
s rheMac8.chr4             30595994 34 + 172585720 CTACCCTGTCCTATGTATCAACATGTGAT-TTTTT
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             29962414 35 - 170955103 CTACCCTGTCCTATGTATGAACATGTGATATTTTT
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     145401 35 +   1495729 CTACCCTGTCCTATGTATGAACATGTGATATTTTT
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     252210 34 -    863181 CTACCCTGTCCTATGTATCAACATGTGAT-TTTTT
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29352852 34 -  71996105 CTACTCTGTCCTATGTATGAACATATGAT-TTTTT
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1      55378 34 -    735854 CTACCCTGTCTTATGTATCAACATGTGAT-TTTTT
i manLeu1.NW_012107142v1   C 0 I 1
s colAng1.NW_012115577v1      95738 35 -   1829203 CTACCCTATTCTATGTATGAGAATGTGATTTTTTT
i colAng1.NW_012115577v1   C 0 I 1
s cebCap1.NW_016107755v1     417455 34 -   1771730 CTACCAAAGACTGTGTATAAACATGAGAT-TTCTT
i cebCap1.NW_016107755v1   N 0 C 0
s otoGar3.GL873550         17352658 34 -  18854210 CTATCCTGCTGTGTATATGAACATGAGAC-TTTTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I

a score=331314.000000
s hg38.chr6_GL000254v2_alt  1336586 49 +   4827813 AAGAATATGAATTACCTGGGATTCCAAAACATAGAGTGAGTCAATGGAA
s panTro5.chr6             30207466 49 + 175400573 AAGAATATGAATTACCTGGGATTCCAAAACACAGAGTGAGTCAATGGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30437261 49 + 173848474 AAGAATATGAATTACCTGGGATTCCAAAACACAGAGTGAGTCAATGGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     153161 49 +   2037526 AAGAATATGAATTACCTGGGATTCCAAAACATAGAGTGAGTCCATGGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74801107 49 + 122973662 AAGAATATGAATTGCCTGGGATTCCAAAACATAGAGTGAGTCAATGGAA
i nomLeu3.chr1a            I 327 C 0
s rheMac8.chr4             30596029 49 + 172585720 AAGAGTATGAATTGCCTGGGATTCCAAAACATAGAGTGAGTCAATGGAA
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             29962450 49 - 170955103 AAGAGTATGAATTACCTGGGACTCCAAAGCATAGAGTGAGACAATGAAA
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     145437 49 +   1495729 AAGAGTATGAATTACCTGGGACTCCAAAGCATAGAGTGAGACAATGAAA
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     252245 49 -    863181 AAGAGTATGAATTGCCTGTGATTCCAAAACATAGAGTGAGTCAATGGAA
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29352887 49 -  71996105 AAGAGTATGAATTACCTGGGACTCCAAAGCATAGAGTGAGACAATGAAA
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1      55413 49 -    735854 AAGAGTATGAATTGCCTGGGATTCCAAAACATAGAGTGAGTCAATTGGA
i manLeu1.NW_012107142v1   I 1 C 0
s colAng1.NW_012115577v1      95774 49 -   1829203 AAGAGTATGAATTACCTGGGACTCCAAAGCATAGAGTGAGACAATGAAA
i colAng1.NW_012115577v1   I 1 C 0
s cebCap1.NW_016107755v1     417489 49 -   1771730 AAAAGTATAAATTACCTGGAATTCCAAAGCATAGAGTGAATAAAGTAAA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         17352692 49 -  18854210 AAGAGTATAAATTCAATGGGATTCTGAAGTATATAGCAAATCCATTGAA
i otoGar3.GL873550         C 0 M 143
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I

a score=624479.000000
s hg38.chr6_GL000254v2_alt  1336635 116 +   4827813 AAT-AGATGATACAGGGTCATTTCCAAGCCTTTGTGGGTC---TCCTGGCCACCACACAAACATGGATGtgttcccatttcttttcagtttcacacagtgcaaaagttgtg----------gacatagaa
s panTro5.chr6             30207515 116 + 175400573 AAT-AGATGATACAGGGTCATTTCCAAGCCTTTGTGGGTC---TCCTGGCCACCACACAAACATGTATGtgttcccatttcttttcagtttcacacagtgcaaaagttgtg----------gacatagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30437310 116 + 173848474 AAT-AGATGATACAGGGTCATTTCCAAGCCTTTGTGGGTC---TCCTGGCCACCACACAAACATGTATGtgttcccatttcttttcagtttcacacagtgcaaaagttgtg----------gacatagaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     153210 114 +   2037526 AATAAGATGATACAGGGTCATTTCC-AGCCTTTGTGGGTC---TCCTGGCCACCACACAAACATggatgtgttcca--tttttttcagtttcacacagtgcaaaagttgtg----------gacatagaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74801156 116 + 122973662 AAT-GGATGATATAGGGTCATTTCCAAGCCTTGGTGGGTT---TCTTGGCCACCACACAAACATggatgtgtccccatttcttttcagtttcacacacagcaaaagttgtg----------gacacagaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30596078 126 + 172585720 AAT-GGATGATATAGGGTCATTTCCAAGCCTTTGTGGGTT---TCCTGGCCACCACACAAACATggatgtgtccccaattcttttcagtttcacacagaggaaaagttgtggacataagctgacatagaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29962499 107 - 170955103 AAT-GGATGATACAGGGTCATTTCCAAGCCTTTG------------TGGCCACCACACAAACGTggatgtgtccccatttcttttcagtttcacacagagcaaaagttgtg----------gacatagaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     145486 107 +   1495729 AAT-GGATGATACAGGGTCATTTCCAAGCCTTTG------------TGGCCACCACACAAACGTggatgtgtccccatttcttttcagtttcacacagagcaaaagttgtg----------gacatagaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     252294 126 -    863181 AGT-GGATGATATAGGGTCATTTCCAAGCCTTTGTGGGTT---TCCTAACCACCACACAAACATGCATGTGTCCCCAATTCTTTTCAGTTTCACAcagagcaaaagttgtggacataagctgacacagaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29352936 107 -  71996105 AAT-GGATGATACAGGGTCATTTCCAAGACTTTGTG------------GCCACCACACAAACATggatgtgtccccatttcttttcagtttcacacagagcaaaagttgtg----------gacatagaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      55462 126 -    735854 AAT-AGATGATATAGGGTCATTTCCAAGCCTTTGTGGGTT---TCCTAGCCACCACACAAACATggatgtgtccccagttcttttcagtttcacacagagcaaaagttgtggacataagctgacatagaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      95823 107 -   1829203 AAT-GGATGATACAGGGTCATTTCCAAGCCTTTG------------TGGCCACCACACAAACATGAATGTGTCCCCATTTCTCTTCAGTTTCACAcagagcaaaagttgtg----------gacatagaa
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     417538 128 -   1771730 AAT-GGAAAATATTGGGTCATGTCTAAGCATCTGAGGATCCCATCATGGTCACCACATGAAAATGGAGATGT-CCCATTACTTTTCAGTTTTACACAGAGCAAACCTTGTGGATCTAAACAGACATAGAA
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17352741 143 -  18854210 M
e aotNan1.NW_018496904v1     125046 89783 -    383796 I

a score=971372.000000
s hg38.chr6_GL000254v2_alt  1336751 148 +   4827813 tcacaaactgtgtttaatttatttgagacattgagtgagctagttttgccctaattttatagaaagatgatgaacaatcataattactaaaccaaagaggctttttggcaggggatggcagg--tactatgttttc--tcctccttTTAAAG
s panTro5.chr6             30207631 148 + 175400573 tcacaaactgtgtttgatttatttgagacattgagtgagctagttttgccctaattttatagaaagatgaggaacaatcataattactaaaccaaagaggctttttggcaggggatggcagg--tactatgttttc--tcctccttTTAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30437426 148 + 173848474 tcacaaactgtgtttaatttatttgagacattgagtgagctagttttgccctaattttatagaaagatgaggaacaatcataattactaaaccaaagaggctttttggcaggggatggcagg--tactatgttttc--tcctccttTTAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     153324 148 +   2037526 tcacaaactgtgtttaatttatttgagacattgagtgagctagttttgccctaattttatagaaagatgatgaacaatcataattactaaaccaaagaggctttttggcaggggatggcagg--tactatgttttc--tcctccttTTAAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74801272 150 + 122973662 tcacaaactgtgtttaatttatttgagatactgagtgagctagttttgccctaattttatagaaagatgatgaacaatcataattgctagaccaaagaggctttttggtaggggattgcaggtatactatgttttc--tcctACTTTTAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30596204 150 + 172585720 tcacaaactgtatttactttatttgagatactgagtgaaatagttttgcctttattttatagaaagatgatgaacaatcataattattaaactaaagaggctttctggcaggggattgcaagtatactacgttttc--tcctGCTTTTAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29962606 148 - 170955103 tcataaactgtgtttaatttatttgagatattgagtgagctagttttgccctaattttatagaaagatgatgaacaatcataattgctaaaccaaagaggctttttggcaggggatggcagg--tactatgttttc--tcttACTTTTAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     145593 148 +   1495729 tcataaactgtgtttaatttatttgagatattgagtgagctagttttgccctaattttatagaaagatgatgaacaatcataattgctaaaccaaagaggctttttggcaggggatgggagg--tactatgttttc--tcctACTTTTAAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     252420 145 -    863181 tcacaaactgt-----atttatttgagatactgagtgaaatagctttgcccttattttatagaaagatggtgaacaatcataattactaaactaaagaggctttctggcaggggattgcaagtatactatgttttc--tcctACTTTTAAGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29353043 148 -  71996105 tcacaaactgtgtttaatttattgtagatattgagtgagccagttttgccctaattttatagaaagatgatgaacaatcataattgctaaaccaaagaggctttttggcagggg-ttgagagg-tactatgttttc--tcctACTTTTAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      55588 150 -    735854 tcacaaactgtatttactttatttgagatactgagtgaaatagttttgcctttatttcatagaaagatgatgaacaatcataattattaaactaaagaggctttctggcaggggattgcaaggatactacgttttc--tcctGCTTTTAAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      95930 148 -   1829203 tcacaaactgtgtttaatttatttgagatattgagtgagctagttttgctctaattttatagaaagatgatgaacaatcataattgctaaaccaaagaggttttttggcaggggacggcagg--tactatgttttc--tcctGCTTTTAAAG
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     417666 150 -   1771730 TCACAAACTATATTTAACTGCATTGAAATATTGAGGGAGCTATCTTTGCTCTAATTGTATGGAAAGATGATGAACAGTCATAATTAGTAAACTAAAGAGGCTTTTTAGCTGGGGATTGCAGGTATAGGATTTTTCC--TCCTACTTTTAAGG
i cebCap1.NW_016107755v1   C 0 N 0
s otoGar3.GL873550         17352887 148 -  18854210 TCACAAACAATACttactatatttgagatactgagggagcaagttttgccctaaatttatagaaagat---gaaaaattataattactaaactaaagaga-tttttagccagggcttgcaagtattttgggttttccatcttcTTATTAAAG
i otoGar3.GL873550         M 143 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I

a score=1731066.000000
s hg38.chr6_GL000254v2_alt  1336899 265 +   4827813 TGCATTTTCCTAAAGAGTCTTGTCTAGGAGTAAATGTCATCACTTTGC-TTTTTTCCTCCGCATTGAtcacttggtcctccctgcatttcagtaaggttgctagaatggag-----gcatttgtccatgattcacagatgaatc--agaggccctatgagtagagagcttctcctgaagtcacacagctcgtgagtggtggagcaatgacaggcacatgactctccaggtccctagtccagttttctGGGTGCCATGAGAATTACAGCCTTTG
s panTro5.chr6             30207779 265 + 175400573 TGCATTTTCCTAAAGAGTCTTGTCTAGGAGTAAATGTCATCACTTTGC-TTTtttcctccacattgatcacttggtcctccctgcatttcagtaaggttgctagaatggag-----gcatttgtccatgattcacagatgaatc--agaggccctatgagtagagagcttctcctgaagtcacacagctcgtgagtggtggagcaatgacaggcacatgactctccaggtccctagtccagttttctGGGTGCCATGAGAATTACAGCCTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30437574 265 + 173848474 TGCATTTTCCTAAAGAGTCTTGTCTAGGAGTAAATGTCATTACTTTGC-TTTtttcctccacattgatcacttggtcctccctgcatttcagtaaggttgctagaatggag-----gcatttgtccatgattcacagatgaatc--agaggccctatgagtagagagcttctcctgaagtcacacagctcgtgagtggaggagcaatgacaggcatatgactctccaggtccctagtccagttttctGGGTGCCATGAGAATTACAGCCTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     153472 263 +   2037526 TGCATTTTCCTAAAGAGTCTTGTCTAGGAGTAAATGTCATCACTTTGC-TTTTTTCCTCCG-ATTGAtcacttggtcctccctgcatttcagtaaggttgctagaatggag-----gca-ttgtccatgattcacagatgaatc--agaggccctatgagtagagagcttctcctgaagtcacacagctcgtgagtggtggagcaatgacaggcacatgactgtccaggtccctagtccagttttctGGGTGCCATGACAATTACAGCCTTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74801422 264 + 122973662 TAC-TTTTCCTAAAGAGTCTTGTCTAGGAGTAAATGTCATCACTTTGC-TTTtttcctctgcattgatcacttggtcctccctgcatttcagtaaggttgctagaatggag-----gcatttgtccatgattcacagatgaatc--agaggccctatgagtagagagtttctcctgaagtcacacagcacatgagtggtggagcaatgacaggcaaatgactctccaggtccctagtccagttttctGGGTGCCATGAAAATTACAGCCTTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30596354 265 + 172585720 TACATTTTCCTAAAGAGTCTTGTCTAGGAGTAAATGTCATCAC--TGA-TTTtttcctccacattgatcacttgttcctccctgcatttcagtaaggttgctagaacggag-----gtgtttgtccatgattcccagaagaatcaaagaggccctaggagtagagagcttctcctgcggtcacacagcacgtgactggtggaggaatgacaggcacatgactctccaggtccctagtccagttttctGGGTGCCATGAGAATTACAGCCTTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29962754 262 - 170955103 TACATTTTCCTAAAGAGTCTTGTCTAGGAGTAAATGTCATCAC------TTTTTTCCTCTGCATTGAtcacttggttctccctgcatttcagtgaggttgctagaatagaa-----gtgttcgtccatgattcacagatgaatcaaagaggccctaggagtagagagcttctcctgaggtcacacagcacgtgagtcatggagcaatgacaagcacatggctctccaggtccctagtccagttttctGGGTGCCATGAGAATTCCAGCCTTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     145741 257 +   1495729 TACATTTTCCTAAAGAGTCTTGTCTAGGAGTAAATGTCATCAC------TTTTTTCCTCTGCATTGAtcacttggttctccctgcatttcagtaaggttgc-----tagaa-----gtgtttgtccatgattcacagatgaatcaaagaggccctatgagtagagagcttctcctgaggtcacacagcacgtgagtcatggagcaatgacaggcacatgtctctctaggtccctagtccagtTTTTTGGGTGCCATGAGAATTCCAGCCTTTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     252565 261 -    863181 TACATTTTCCTAA-----TTTGCCTAGGGGTAAATGTCATCAC--TGATTTTTTTCCTCCGCATTGAtcacttgttcttccctgcatttcagtaaggttgctagaatggag-----gtgtttgtccatgattcacagaagaatcgaagaggccctaggagtagagagcttctcctgcggtcacacagcacctgagcggtggagcaatgacaggcacatggctctccacgtccctagtccagttttctGGGTGCCATGAGAATTCCAGCCTTTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29353191 257 -  71996105 TACATTTTCCTAAAGAGTCTTGTCTAGGAGTAAATGTCATCAC------TTTTTTCCTCCGCATTGAtcacttggttctccctgcatttcagtaaggttgctagaa----------gtgtttgtccatgattcacagatgaatcaaagaggccctaggagtagagagcttctcctgaggtcacacagcacgtgagtcatggagcaatgacaggcacatggctctccaggtccctagtccagttttctGGGTGCCATGAGAATTCCAGCCTTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      55738 265 -    735854 TACATTTTCCTAAAGAGTCTTGTCTAGGAGTAAATGTCATCAC--TGA-TTTTTTCCTCCACATTGATCACTTGTTCCTCCCTGCATTTCAGTAAGGTTGCTAGAACGGAG-----GTGTTTGTCCATGATTCCCAGAAGAATCAAAGAGGCCCTAGGAGTAGAGAGCTTCTCCTGCGGTCACACAGCACGTGACTGGTGGAGGAATGACAGGCACATGACTCTCCAGGTCCCTAGTCCAGTTTTCTGGGTGCCATGAGAATTACAGCCTTTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      96078 254 -   1829203 TACATTTTCCTACAGAGTCTTGTCTAGGAGTAAATGTCATCAC------TTTTTTCCTCTGCATTGAtcacttggccctccctgcatttcagtaaggttgctaga-tggag-----gtgtttgtccatgattcacagatgaatcaaagaggccctaggagtagagagcttgtcctgaggtcacacagcatgtgagtcgtggagcaatgacaagcagatggctctccag-------gtccagttttctGGGTGCCATGAGAATTACAGCCTTTG
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     563260 272 -   1771730 TGCATTTTCCTAAAAAGCCTTGTCTAGGAATAAACGTCACAACTTTGC-TTTTTTCCTTCCCATTGAtcacttgctcctccctgtatttcagtaaggttggtagaatggaatggatgtgttaatccacaattcacagatgaatcagagaggcactaggagtagagagtttctcctgaggtcacacagcacctgagtggtggagcaatggcaggcacatgactcttcaggtctctagtccagctttttGGGTGTCATGAGAATTATAGCCTTTG
i cebCap1.NW_016107755v1   N 0 I 10024
s otoGar3.GL873550         17353035 263 -  18854210 GGCATGTTCCTAAAAATCCCTGTCTAGAAGGAATCATCATCATTTTGA-TTTTTCTCTCTCCATTGACTCCTTGGTTCCCATTGCATTTCAGTAATGTTGTCAGAATGGCT-----GTGTTTATCCGTGATTCACAGATAAATAAAAATGGCCC-AGGAGGAGAGAGATTCTCCGGAGGT--CACAGCAATTGAGGGGCAGAGCAGCAACAAGCATATAGTGCCCTTGGTTGCTACAACAGTGTTTTGGGAGCTACAAAAATTACAACCACG-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I

a score=257073.000000
s hg38.chr6_GL000254v2_alt  1337164 46 +   4827813 GTTCCTTTTAC-ATGTAGTTCATTTCTGAACCTGAGAAggagaatgc
s panTro5.chr6             30208044 43 + 175400573 GTTCCTTTTAC-ATGTAGTTCATTTCTGAACCTGAg---gagaatgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30437839 43 + 173848474 GTTCCTTTTAC-ACGTAGTTCATTTCTGAACCTGAG---GAGAATGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     153735 46 +   2037526 GTTCCTTTTAC-ATGTAGTTCATTTCTGAACCTGAGAAggagaatgc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74801686 47 + 122973662 GTTTCTCTTACAATGTGGTTCATTTCTGAACCTGAGAAggagaatgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30596619 46 + 172585720 GTTTCTCTTAC-ATGTGGTTCATTTTTAAACCTGAGAAggagaatgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29963016 46 - 170955103 GTTTTTCTTAC-ATGTGGTTCATTTCTGAACCTGAGAAGGAGAATGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     145998 46 +   1495729 GTTTTTCTTAC-ACGTGGTTCATTTCTGAACCTGAGAAGGAGAATGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     252826 46 -    863181 GTTTCTCTTAC-ATGTGGTTCATTTCTAAACCTGAGAAggagaatgc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29353448 46 -  71996105 GTTTCTCTTAC-ATGTGGTTCATTTCTGAACCTGAGAAGGAGAATGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      56003 46 -    735854 GTTTCTCTTAC-ATGTGGTTCATTTTTAAACCTGAGAAggagaatgc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      96332 46 -   1829203 GTTTCTCTTAC-AGGTGGTTCATATCTGAACCTGAGAAGGAGAATGA
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550         17353298 46 -  18854210 GTTCCTCATTT-TTGTGGTTCTTTTCTTAACCAGAGAAGGACAACAC
i otoGar3.GL873550         C 0 I 7328
e mm10.chr17               58009284 6253 -  94987271 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e cebCap1.NW_016107755v1     563532 10024 -   1771730 I

a score=213206.000000
s hg38.chr6_GL000254v2_alt  1337210 42 +   4827813 acctcaggtgacta-----------------------acagtttttgctcttctgtacttgtctg
s panTro5.chr6             30208087 42 + 175400573 acctcaggtgacta-----------------------acagtttttgctgttctgtacttgtctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30437882 42 + 173848474 ACCTCAGGTGACTA-----------------------ACAGTTTTTGCTGTTCTGTACTTGTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     153781 42 +   2037526 acctcaggtgacta-----------------------acagtttttgctgttctgtacttgtctg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74801733 38 + 122973662 acctcaggtg---------------------------acattttttgttgttctgcacttgtctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30596665 42 + 172585720 acctcaggtgacta-----------------------acattttctgttgttctgcacttgtctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29963062 65 - 170955103 ACCTCAGGTGAATAACAGTTTTTGCTGTTCTGCACGTACAGTTTTTGCTGTTCTGCACGTGTCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     146044 42 +   1495729 ACCtcaggtgacta-----------------------acagtttttgctgttctgcacttgtctg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     252872 42 -    863181 acctcaggtgacta-----------------------acattttctgtttttctgcacttgtctg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29353494 42 -  71996105 ACCTCAGGTGACTA-----------------------ACAGTTTTTGCTGTTCTGCACTCGTCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      56049 42 -    735854 acctcaggtgacta-----------------------acattttctgttgttctgcacttgtctg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      96378 42 -   1829203 ACCtcaggtgacta-----------------------acagtttttgctgttctgcacttgtctg
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e cebCap1.NW_016107755v1     563532 10024 -   1771730 I

a score=1676156.000000
s hg38.chr6_GL000254v2_alt  1337252 285 +   4827813 agaatgaccccaaaagATTTTTAAAGGCCAATTCTTTGGCTACCAACCCTATTTTGCCCAGGCATGGACATGGAGCAG----GTGAACACTGCCTTTACCTGTGACATGCCTGAAGATTCTGAGACCTACGTGAATCAGGTAAGCTCCATACACAGAGGGACACCCACTCTCCCACCCACTTATTTTCTGTATCTTTTCACACTTCACTTCTTCAT-----------TCCTCCCTCTGGCTGTCTTCCCTCTTTGGGGTCTTCTAGTCCTAACCTCTGTCTCCTTCCAGGTGACTAGAGC
s panTro5.chr6             30208129 285 + 175400573 agaatggccccaaaagATTTTTAAAGGCCAATTCTTTGGCTACCAACCCTATTTTGCCCAGGCATGGACATGGAGCAG----GTGAACACTGCCTTTACCTATGACATGCCTGAAGATTCTGAGACCTACGTGAATCAGGTAAGCTCCACACGCAGAGGGACACCCACTCTCCCACCCACTTATTTTCCGTATCTTTTCACACTTCACTTCTTCAT-----------TCCTCCCTCTGGCTGTCTTCCCTCTTTGGGGTCTTCTAGTCCTAACCTCTGTCTCCTTCCAGGTGACTAGAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30437924 285 + 173848474 AGAATGGCCCCAAAAGATTTTTAAAGGCCAATTCTTTGGCTACCAACCCTATTTTGCCCAGGCATGGACATGGAGCAG----GTGAACACTGCCTTTACCTATGACATGCCTGAAGATTCTGAGACCTACGTGAATCAGGTAAGCTCCACACGCAGAGGGACACCCACTCTCCCACCCACTTATTTTCCGTATCTTTTCACACTTCACTTCTTCAT-----------TCCTCCCTCTGGCTGTCTTCCCTCTTTGGGGTCTTCTAGTCCTAACCTCTGTCTCCTTCCAGGTGACTAGAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     153823 284 +   2037526 agaatgaccccaaaagATTTTTAAACGCCAATTATTTGGCTACCAACCCTATTTTGCCCAGGCATGGACATGGAGCAG----GTGAACACTGCCTTTACCTATGACATGCCTGAAGATTCTGAGACCTACGTGAATCAGGTAAGCTCCACACACAGAGGGACACCCACTCTCCCACCCACTTATTTTCTGTATCTTTTCACACTTCACTTCTTCAT-----------TCCTCCCTCTGGCTGTCTT-CCTCTTTGGGGTCTTCTAGTCCTAACCTCTGTCTCCTTCCAGGTGACTAGAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74801771 285 + 122973662 agaatgaccccaaaagATTTTTAAAGACCAATTCTTTGGCTACCAACCCTATTTGGCCAAGTCATGGACATGGAGCAG----GTGAAAACTGCCTTTATCTATTACATGCCTGAAGATTCTGAGACCTATGTGTATCAGGTAAGCTCCACATGCAGAGGGACACCCACTCTCCCACCCGCTTATTTTCTGTATCTTTTCACACTTCACATCCTCAT-----------CCCTCCCTCTGGCTGTCTTCCCTCTTTGGGGTCTTCTAGTCCTACCCTCTGTCTCCTTCCAGGTGACTAGAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30596707 284 + 172585720 agaatgaccccaaaagATGTTTGAAGATTAATTCTTTGGCTACCAA-CCTATTTGGCCAAGTCATGGACATGGAGCAG----GTGAAAACTGCCTTTACCTATGACTTGCCTAAAGATTCTGAGACCCACGTGAATCAGGTAAGCTCCACACACAGAGGGACACTTACTCTCTTACCTGCTTATTTTCTGTACCTTTTCACATTTCACATCCTCAT-----------CCCTCCCTCTGGGTGTCTTCCTACTTTGGGGTCTTCTGTTTCTACCCTCTGTCTCCTTCCAGGTGACTAGAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29963127 294 - 170955103 AGAATGACACCAAAAGATTTTTAAAGACTAATTCTTTGGCTACCAACCCCATTTTGCCCAGGCATCGACATGGAGCAG----GTGAACACTGCGTTTACCTATGACATGCCTGAGGATTCTGAGACCTGTGTGAATCAGGTGAGCTCCACACAC--AGGGACATCCACTCTCCTACCTGCTTATTTTCTCTGTCTTTTCACACTTCTCATCGTCATCCCTCCCTCTGCCCTCCCTCTGGCTGTCTTCCTACTTTGGGGTCTTCTAGTTCTACCACCTGTCTCCTTCCAGGTGACTAGAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     146086 283 +   1495729 agaatgaccccaaaagATTTTTGAAGACTAGTTCTTTGGCTACCAACCCCATTTTGCCCAGGCATCGACATGGAGCAG----GTGAACACTGCGTTTACCTATGACATGCCTGAGGATTCTGAGACCTGTGTGAATCAGGTGAGCTCCACACAC--AGGGACATCCACTCTCCTATCTGCTTATTTTCTGTGTCTTTTCACACTTCTCATCGTCAT-----------CCCTCCCTCTGGCTGTCTTCCTACTTTGGGGTCTTCTAGTTCTACCATCTGTCTCCTTCCAGGTGACTAGAGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     252914 284 -    863181 agaatgaccccaaaagATGTTTGAAGATTAATTCTTTGGCTACCAA-CCTATTTGGCCAAGTCATGGACATGGAGCAG----GTGAAAACTGCCTTTACCTATGACTTGCCTGAAGATTCTGAGACCCACGTGAATCAGGTAAGCTCCACACACAGAGGGACACTCACTCTCTTACCTGCTTATTTTCTGTACCTTTTCACATTTCACATCCTCAT-----------CCCTCCCTCTGGGTGTCTTCCTACTTTGGGGTCTTCTGTTTCTACCCTCTGTCTCCTTCCAGGTGACCAGCGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29353536 283 -  71996105 AGAATGACACCAAAAGATTTTTAAAGACTAATTATTTGGCTACCAATCCCATTTTGCCCAGGCATCGACATGGAGCAG----GTGAACACTGCCTTTACCTATGACATGCCTGAGGATTCTGAGACCTGTGTAAATCAGGTAAGCTCCACACAC--AGGGACATTCACTCTCCTACCTGCTTATTTTCTGTGTCTTTTCACACTTCTCATTGTCAT-----------CCCTCCCTCTGGCTGTCTTCCTACTTTGGGGTCTTCTAGTTCTACCACCTGTTTCCTTCCAGGTGACTAGAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      56091 284 -    735854 agaatgaccccaaaagATGTTTGAAGATTAATTCTTTGGCTACCAA-CCTATTTGGCCAAGTCATGGACATGAAGCAG----GTGAAAACTGCCTTTACCTATGACTTGCCTAAAGATTCTGAGACCCACGTGAATCAGGTAAGCTCCACACACAGAGGGACACTCACTCTCTTACCTGCTTATTTTCTGTACCTTTTCACATTTCACATCCTCAT-----------CCCTACCTCTGGGTGTTTCCCTACTTTGGGGTCTTCTGTTTCTACCCTCTGTCTCCTTCCAGGTGACTAGAGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      96420 283 -   1829203 agaatgaccccaaaagATTTTTAAAGACTAATTCTTTGGCTACCAACCCCATTTTGCCCAGGCATGGACATGGAGCAG----GTGAACACTGCCTTTACCTATGACATGCCTGAGGATTCTGAGGCCTGTGTGAATGAGGTAAGCTCCACACAC--AGGGACATCCACTCTCCTACCTGCTTATTTTCTGTGTCTTTTCACACTTCACATGGTCAT-----------CCCTCCCTCTGGCTGTCTTCCTACTTTGGGGTCTTCTAGTTCTACCACCTGTCTCCTTCCAGGTGACTAGAGT
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     573556 286 -   1771730 agaaagaccccaaaagATTTTTAAAGACCAATTATTTAGCAACCCA-CCTATTTGGCTGAGTCATGGACATGGAGAGGATGAATGAACACTGTCTTTACCTACGACACGCCTGAGGACTC--AAGACTACATCCATCAGGTAAGCCCCACACCCAGAAAGACACCCACTCCTCCACCTCCTTACATTTTGTATCTTTTCACACTTTACATCCTCAT-----------CCCGCCCTCTGGGTGTCTTCTCGTTTTGGGATCTACTAGTCCCACCCTCTGTCTCCTTCCAGGTGGCCAGAGC
i cebCap1.NW_016107755v1   I 10024 I 8
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I

a score=110563.000000
s hg38.chr6_GL000254v2_alt  1337537 21 +   4827813 AGGCTGGTTTGGAACAGG-------------GCT
s panTro5.chr6             30208414 21 + 175400573 AGGCTGGTTTGGAACAGG-------------GCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30438209 21 + 173848474 AGGCTGGTTTGGAACAGG-------------GCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     154107 21 +   2037526 AGGCTGGTTTGGAACAGG-------------GTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74802056 34 + 122973662 AGGCTGGTTTGGAACAGGGCTTGGTCATCACGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30596991 34 + 172585720 AGACTCATTTGGAATAGGGCTTGGCCATCACACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29963421 34 - 170955103 AGGCTGGTTTGGAACAGGGCTTGGCCATCACCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     146369 34 +   1495729 AGGCTGGTTTGGAACTGGGCTTGGCCATCACGTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     253198 34 -    863181 AGACTCATTTGGAATAGGGCTTGGCCATCATGCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29353819 34 -  71996105 AGGCTGGTTTGGAACAGGGCTTGGCCATCACGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      56375 34 -    735854 AGACTCATTTGGAATAGGGCTTGGCCATCACACT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      96703 34 -   1829203 AGGCTGGTTTGGAACAGGGCTTGGCCATCATGTT
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e cebCap1.NW_016107755v1     573842  8 -   1771730 I

a score=1581935.000000
s hg38.chr6_GL000254v2_alt  1337558 267 +   4827813 TGTGTCGGATGAGAATTGTGCCAGGATCCTCAGTGATGGGCAGCATCACTTTAAGTTCAGTGTTAG-GAGCTACCTGCTGAGACAGACGTCTCCTCCACAGTGAGTGCTGATTTCATGAAACCCTTAGTTCCTCCCTATTCCTTACTG----TGTCTTCAATCCCATCATGTAGGTCATGGGCACTTAACGCATAATGAACAATTGACTGCTTCATGCCCCCTGGCCGTTGATGCTGTGTTGGGACGTTTTGCTGCCCTCTATGTGGGGTCT
s panTro5.chr6             30208435 267 + 175400573 TGTGTCGGATGAGAATTGTGCCAGGATCCTCAGTGATGGGCAGCATCACTTTAAGTTCAGTGTTAG-GAGCTACCTGCTGAGACAGACATCTCCTCCACAGTGAGTGCTGATTTCATGAAACCCTTAGTTCCTCCCTATTCCTTACTG----TGTCTTCAATCCCATCATGTAGGTCATGGGCACTTAACGCATAATGAACAATTGACTGGTTCATGCCCCCTGGCCTTTGATGCTGTTTTGGGACATTTTGCTGCTGTCTATGTGGGGTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30438230 267 + 173848474 TGTGTCGGATGAGAATTGTGCCAGGATCCTCAGTGATGGGCAGCATCACTTTAAGTTCAGTGTTAG-GAGCTACCTGCTGAGACAGACATCTCCTCCACAGTGAGTGCTGATTTCATGAAACCCTTAGTTCCTCCCTATTCCTTACTG----TGTCTTCAATCCCATCATGTAGGTCATGGGCACTTAACGCATAATGAACAATTGACTGGTTCATGCCCCCTGGCCTTTGATGCTGTTTTGGGACATTTTGCTGCCGTCTATGTGGGGTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     154128 267 +   2037526 TGTGTCGGATGAGAACTGTGCCAGGATCCTCAGTGATGGGCAGCATCACTTTAAGTTCAGTGTTAG-GAGCTACCTGCTGAGACAGACATCTCCTCCACAGTGAGTGCTGATTTCATGAAACCCTTAGTTTCTCCCTATTCCTTACTG----TGTCTTCAATCCCATCATGTAGGTCATGGGCACTTAACGCATAATGAACAATTGACTGGTTCATGCCCCCTGGCCTTTGATGCTGTGTTGGGACGTTTTGCTGCCCTCTATGTGGGGTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74802090 268 + 122973662 TGTGTTGGATGTGAATGATGCCAGGATCCTCAGAGATGGGCAGCATCGCTTTAAGTTCAGTGTTAGTGAGCTGACTGATGAGACAGATGTCTCCTCCACAGTGAGTGCTGATTTCATGAAACCCTTAGTTCCTCCCTATTCCTTACTG----TGTCTTCAGTCCCATCATGTAGGTCATGGGCACTTAACACATAATGAACAATTGAATGGTTCATGCCCCCTGGCCTTTGATGCTGTGTTGGGATGTTTTGCTGGCCTCTGTGTGGCATCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30597025 272 + 172585720 TGTGTCAAATGAGAATGATGCCTGGATCCTCAGTGATGGGCAGCATTGCTTTGAGGTCAGTGATAGTGAGATGACTGATGAGACAGACGTCTCCTCCACAGCGAGTGTTGATCTCATGAAACCCTTAGGTCCTCCCTGTTCCTTAGCGTGTTTGTCTTCAATCTCATCATGTGGGTCATGGGCATCTGCTGCTTAATGGACACTTGACTGGTTCATGCCCCCTGGCCTTTGATGCTGTGTTGGGATGTTTTCCTGGCCTCTGCATGGGGTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29963455 267 - 170955103 TGTGTTATATGAGAATGATGCCAGGATCCTCAGTGATGGGCCACTTCGCTTTAAGGTCAGTGTTAG-GAGCTGCCTGATGAGACAGACATCTCCTCCACAGTGAGTGCTGATCTCATGAAACCCTTAGGTCCTCCCTATTCCTTACTG----TGTCTTCAATCCCATCATGTAGGGCATGAGCACCTAATGCATAATGGACGCTTGACTGGTTCATGCCCCCTGGCCTTTCATGCTGTGTTGGGATGTTTTCCTGGCCTCCATGTGGGGTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     146403 267 +   1495729 TGTGTCAGATGAGGATGATGCCAGGATGCTCAGTGATGGGCGGTATCGTTTTGAGGTCAGTGTTAG-GAGCTGCCTGATGAGACGGACGTCTCCTCCACAGTGAGTGTTGATTTCATGAAACCCTTAGGTCCTGCCTGTTCCTTACTG----TGTCTTCAATCCCATCATGTAGGGCATGAGCACCTAATGCATAATGGACGCTTGACTGGTTCATGCCCCCTGGCCTTTCATGCTGTGTTGGGATGTTTTCCTGGCCTCCATGTGGGGTAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     253232 272 -    863181 TGTGTCAAATGAGAATGATGCCTGGATCCTCAGTGATGGGCAGCATTGCTTTGAGGTCAGTTATAGTGAGATGACTGATGAGACAGACGTCTTCTCCACAGTAAGTGCGGATCTCATGAAACCCTTAGGTCCTCCCTGTTCCTTAGTGTGTTTGTCTTCAATCCCATCATGTTGGTCATGGGCATCTGTTGCATAATAGACACTTGACTGGTTCACGCCCCCTGGCCTTTGATGCTGTGTTGGGATGTTTTCCTGGCCTCTGTGTGGGGTCT
i cerAty1.NW_012002535v1   C 0 I 994
s chlSab2.chr17            29353853 267 -  71996105 TGCATCAGATGAGAATGATGCCAGGATCCTCAGTGATGGGCAGCATTGCTTTGAGGTCAGTGTTAG-GAGCTGCCTGATGAGACAGACGTCTCCTCCACAGTGAGTGCTGATCTCATGAAACCCTTAGGTCCTCCCTGTTCCTTACTG----TGTCTTCAATCCCATCACGTAGGGCATGAGCACCTAATGCATAATGGACACTTGACTGGTTCATGCCCCCTGGCCTTTGATGCTGTGTTGGGATGTTTTCCTGGCCTCCATGTGGGGTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      56409 272 -    735854 TGTGTCAAATGAGAATGATGCCTGGATCCTCAGTGATGGGCAGCATTGCTTTGAGGTCAGTGATAGTGAGATGACTGATGAGACAGACGTCTCCTCCACAGCGAGTGCTGATCTCACAAAACCCTTAGGTCCTCCCTGTTCCTTAGCGTGTTTGTCTTCAATCTCATCATGTGGATCATGGGCATCTGCTGCATAATGGACACTTGACTGGTTCATGCCCCCTGGCCTTTGATGCTGTGTTGGGATGTTTTCCTGGCCTCTGCATGGGGTAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      96737 267 -   1829203 TGTGTCAGATGAGAATGATGCCAGGATTCTCAGTGATGGGCCGCATCGCTTTGAGGTCAGTGTTAG-GAGCTGCCTGATGAGACAGACATCTCCTCCACAGTGAGTGCTGGTTTCATGAAACCCTTAGGTCCTCCCTATTCCTTACTG----TGTCTTCAATCCCATCATGTAGGGCATGAGCGCCTAATGCATAATGGATACTTGACTGGTTCATGTCTCCTGGCCTTTGATGCTGTGTTGGGATGTTTTCCTGGCCTCCATGTGGGGTAT
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     573850 271 -   1771730 TGTGTCCGATGAGAATAATGCCAGGATCCTCAGTGATGAGCAGTATCACATTGAGATCAGTGTTAA-GAGCTGCCTGATGAGACAGACGTCTCCTCCACTGTGAGTGCTGAGCTCATGGAACTCTTAAGTCCTCCCTGTTCCTTAGTGTGTTTGTCTTCAATCCCACCACATAGGTCATGGGCACCTGATGCGTAATGGACATGTGACTGGTTCATGCCCCCTGGACTTTGATGCTTTGTTGGGATGTTTTCCTGGTCTCTATGTGGACACT
i cebCap1.NW_016107755v1   I 8 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I

a score=1146162.000000
s hg38.chr6_GL000254v2_alt  1337825 223 +   4827813 GTGCCTTTTC---TCATATTACATCTCTTCCACCACGCCCAAGTCCATCCTCTGAACCCAGGCAGTACACCAGCATCTGCATGTGTGCTGTGTGTTCCTGCCTTGCTTTGTCC-TTTCATGCCTTATTCTCACTGTGCCATGTCTCCTTCTCAGTTGAACAGATGCAGTAGGAGACTCGCTCATTCTGGAATGTGACCATCTGCCCTTCAGGAG-AGGACAGCAGGGT
s panTro5.chr6             30208702 223 + 175400573 CTGCCTTTTC---TCATATTACATCTCTTCCACCACGCCCAAGTCCATCCTCTGAACCCAGGCAGTACACCAGCATCTGCATGTGTGCTGTGTGTTCCTGCCTTGCTTTGTCC-TTTCATGCCTTATTCTCACTGTGCCATGTCTCCTTCTCAGTTGAACAGATGCAGTAGGAGACTCGCTCATTCTGGAATGTGACCATCTGCCCTTCAGGAG-AGGACAGCAGGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30438497 223 + 173848474 CTGCCTTTTC---TCATATTACATCTCTTCCACCACGCCCAAGTCCATCCTCTGAACCCAGGCAGTACACCAGCGTCTGCATGTGTGCTGTGTGTTCCTGCCTTGCTTTGTCC-CTTCATGCCTTATTCTCACTGTGCCATGTCTCCTTCTCAGTTGAACAGATGCAGTAGGAGACTCGCTCATTCTGGAATGTGACCATCTGCCCTTCAGGAG-AGGACAGCAGGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     154395 223 +   2037526 CTGCCTTTTC---TCATATTACATCTCTTCCACCATGCCCAAGTCCATCCTCTGAACCCAGGCAGTACACCAGTGTCTGCATGTGTGCTGTGTGTTCCTG-CTTGCTTTGTCC-TTTCATGCCTTATTCTCACTGTGCCATGTCTCCTTCTCAGTTGAACAGATGCAGTAGGAGACTCGTTCATTCTGGAATGTGACCATCTGCCCTTCAGGAGAAGGACAGCAGGGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74802358 227 + 122973662 CTATCTTCTCTCATCATATTACATCTCTTCCCCCACCCCCAAGTCCATCCTCTGAACCCAGGCAGTACACCAGCATCCACATGTGTGCTGTGTGCTCCTGCCTCGCTTTGTCCTTTTCATGCCTTATTCTCACTGTGCCATGTTTCCTCCTCAGTTGAACAGACGCAGTAGGAGACTTGCTCATTCTGGAATGTGACCATCTGCCCTTCAGGAG-AGGACAGCAGGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30597297 227 + 172585720 CTGTCTTCTCTCATCATATTACATCTCATGCCCCATCCCTAAGTCCATCCTCTGAACCCACGCAGTACACCAGCATCCGCATGTGAGCTGTGTGTTCCTGCCCGGCTTTGCCCTTTTCATGCCTTATTCTCACTGTGCCATGTTTCCTTCTCAGTTGAACAGACGCGGTAGGATACTCGCTTATTCTGGAATGTGACCATCTGCCCTTCAGGAG-AGGACAGCAGGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29963722 227 - 170955103 CTGTTTTCTCTCATCATATTACATCTCTCTCCCAACCTGCAAGTCCGTCCTCTGAACCCAGGCAGTACACCAGCGTCTGCATGTGTGCTGTGTGTTCCTGCCTTGCTTTGTCCTTTTCATGCCTTATTCTGACTGTGCCATGTTTCCTCCTCAGTTGAACAGAAGTGGTAGGAGACTCGCTCATTCTGGAATGTGACCATCTGCCCTTCAGGAG-AGGATAGCAGGGT
i macFas5.chr4             C 0 I 33443
s macNem1.NW_012012100v1     146670 227 +   1495729 CTGTTTTCTCTCATCATATTACATCTCTCTCCCCACCTGCAAGTCCGTCCTCTGAACCCAGGCAGTACACCAGCGTCTGCATGTGTGCTGTGTGTTCCTGCCTTGCTTTGTCCTTTTCATGTCTTATTCTGACTGTGCCATGTTTCCTCCTCAGTTGAACAGAAGTGGTAGGAGACTCGCTCATTCTGGAATGTGACCATCTGCCCTTCAGGAG-AGGATAGCAGGGT
i macNem1.NW_012012100v1   C 0 I 5498
s chlSab2.chr17            29354120 227 -  71996105 CTGTTTTCTCTCATCATATTACATCTCTCCCCCAACCTGCAAGTCCATCTTCTGAACCCAGGCAGTACACCAGCGTCTGCATGTGTGCCATGTGTTCCTGCCTTGCTTTGTCCTTTTCATGCCTTATTCTGACTGTGCCATGTTTCCTCCTCAGTTGAACAGAAGTGGTAGGAGACTCGCTCATTCTGGAATGTGACCATCTGCCCTTCACGAG-AGGACAGCAGGGT
i chlSab2.chr17            C 0 N 0
s manLeu1.NW_012107142v1      56681 227 -    735854 CTGTCTTCCCTCATCATATTACATCTCATGCCCCATCCCTAAGTCCATCCTCTGAACCCACGCAGTACACCAGCATCTGCATGTGAGCTGTGTGTTCCTGCCCGGCTTTGCCCTTTTCATGCCTTATTCTCACTGTGCCATGTTTCCTACTCAGTTGAACAGACGCGGTAGGATACTTGCTTATTCTGGAATGTGACCATCTGCCCTTCAGGAG-AGGACAGCAGGGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      97004 227 -   1829203 CTGTTTTCTCTCATCATATTACATCTCTCCCTCCACCTGCAAGTCCATCCTCTGAACCCAGGCAGTACACCAGTGTCTGCATGTGTGCTGTGTGTTCCTGCCTTGCTTTGTCCTTTTCATGCCTTATTCTGACTGTGCCATGTTTCCTCCTCAGTTGAACAGAAGTGGTAGGAGACTCGCTCATTCTGGAATGTGACCATCTGCCCTTCAGGAG-AGGACAGCAGGGT
i colAng1.NW_012115577v1   C 0 T 58248
s cebCap1.NW_016107755v1     574121 226 -   1771730 CTTTCTTCTCTCATTATATTACGTCTCTCTCACCATCCCCAAGAATGTCCTCTGAACCTGCACAGTACACCAGCACCTGCGTGTGTGCCGTATGTTTCTTCATCA-TTTCCCCTTTTCATTCCTTACTCTGACTGTGTCACATTTTCCCCTCAGTTAAACAGACATGGTAAAAGACTCTCCCATTCTGGAATGTGACCATCTGCCCTGCAGGAG-AGGACACCAGGGA
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e cerAty1.NW_012002535v1     253504 994 -    863181 I

a score=719.000000
s hg38.chr6_GL000254v2_alt  1338048 2 +   4827813 GT
s panTro5.chr6             30208925 2 + 175400573 GT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30438720 2 + 173848474 GT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     154618 2 +   2037526 GT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74802585 2 + 122973662 GG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30597524 2 + 172585720 AG
i rheMac8.chr4             C 0 C 0
s manLeu1.NW_012107142v1      56908 2 -    735854 AG
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     574347 2 -   1771730 GT
i cebCap1.NW_016107755v1   C 0 I 48
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e cerAty1.NW_012002535v1     253504 994 -    863181 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=95259.000000
s hg38.chr6_GL000254v2_alt  1338050 59 +   4827813 GGGTGAAGGAGACCCTGCTGCCCCCACACCTGACAG---CCTCCA---CCACCCCCTGGCTTTCC
s panTro5.chr6             30208927 59 + 175400573 GGGTGAAGGAGACCCTGCTGCCCCCACACCTGACAG---CCTCCA---CCACCCCCTGGCTTTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30438722 59 + 173848474 GGGTGAAGGAGACCCTGCTGCCCCCACACCTGACAG---CCTCCA---CCACCCCCTGGCTTTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     154620 59 +   2037526 GGGTGAAGGAGACCCTGCTGCCCCCACACCTGACAG---CCTCCA---CCACCCCCTGGCTTTCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74802587 62 + 122973662 GGGTGAAGGAGACCCTGCTGCCCCCACCCCTGACAGCCACCACCA---CCACCCCCTGGCTTTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30597526 62 + 172585720 GGGAGAAGGAGACCCTGTTGCCCCCACCCTTGGCAG---CCTCCATCCCCACCCCAGAGCTTCAC
i rheMac8.chr4             C 0 C 0
s manLeu1.NW_012107142v1      56910 62 -    735854 GGATGAAGGAGACCCTGCTGCCCCCACCCCTGAAAG---CCTCCACCCCCACCCCAGAGCTTCCC
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e cebCap1.NW_016107755v1     574349 48 -   1771730 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e cerAty1.NW_012002535v1     253504 994 -    863181 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=621515.000000
s hg38.chr6_GL000254v2_alt  1338109 278 +   4827813 TCTTCTGCATCAGCACCACTCCCGAACCATCATTCCTGATCGTCAGAATTTTTAATGTAACTAAACATGAAACACAAGTGCATCTGCATTATGTGTGGGTGCTCTCTCCCTTTATTGTATTTGGGGTAAGATTATTTTAGGGCATGGTCCAGGGTAAATTCCTGTAAGGCCTGGATGCCCTGCTGTGAGGTCAAAGGGGGACG-------GACTGCAGAGCCCTGGCTCCCCAACTACCTGCCTATTTCCGGCCCTTTGTTGGGGTCTCTTCTGCTTTATCTGGC
s panTro5.chr6             30208986 278 + 175400573 TCTTCTGCATCAGCACCACTCCTGAACCATCATTCCTGATCGTCAGAATTTTTAATGTAACTAAACATGAAACACAAGTGCATCTGCATTATGTGTGGGTGCTCTCTCCCTTTATTGTATTTGGGGTAAGATTATTTTAGGGCATGGTCCAGGGTAAATTCCTGTAAGGCTTGGGTGCCCTGCTGTGAGGTCAAAGGGGGACG-------GACTGCAGAGCCCTGGCTCCCCAACTACCTGCCAATTTCCTGCCCTTTGTTGGGGTCTCTTCTGCTTTATCTGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30438781 278 + 173848474 TCTTCTGCATCAGCACCACTCCTGAACCATCATTCCTGATCGTCAGAATTTTTAATGTAACTAAACATGAAACACAAGTGCATCTGCATTATGTGTGGGTGCTCTCTCCCTTTATTGTATTTGGGGTAACATTATTTTAGGGCATGGTCCAGGGTGAATTCCTGTAAGGCCTGGGTGCCCTGCTGTGAGGTCAAAGGGGGACG-------GACTGCAGAGCCCTGGCTCCCCAACTACCTGCCAATTTCCTGCCCTTTGTTGGGGTCTCTTCTGCTTTATCTGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     154679 278 +   2037526 TCTTCTGCATCAGCACCACTCCTGAACCATCATTCCTGATTGTCAGAATTTTTAATGTAACTAAACATGAAACACAAGTGCATCTGCATTATGTGTGGGTGCTGTCTCCCTTTATTGTATTTGGGGTAAGATTATTTTAGGGCATGGTCCAGGGTAAATTCCTGTAAGGCCTGGGTGCCCCGCTGTGAGGTCAAAGGGGGACG-------GACTGCAGAGCCCTGGCTCCCCAACTACCTGCCAATTTCCGGCCCTTTGTTGGGGTCTCTTCTGCTTTATCTGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74802649 284 + 122973662 TCTTCTGCATCAGCACCACTCCTGAACC-CCATTCCTGATTGTCAGAATTTTTAATGTAACTAAAAATGAAACACAAATGCATCTGCATTATGTGTGGGTGCTCTCTCGTTTTATTGTATTTGGGGTGAGGTTATTTTAGGGCATGGTCCAGGATAAATTCCTGTAAGGCCTGAGTGTCCTGCTGCGAGGTCAAAGGGGGATGGGACTAAGACTGCAGAGCCCTGGCTCCCCCACTACCTGCCAATTGCCAGTCCTTTGTTGGGGTCTCTTCTGCTTTATATGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30597588 284 + 172585720 TCTTCTACATCAGCACCACTTCTGAACCCCCATTACTGATTGTCAGAATTTTTAACACAACTAAACATGAAACACAAGTGCATCTGCATAATGTGTGGGTGCTCTTTCATTTTATTGTATTTGGGGTGAGGTTATTTTAGGGCATGGT-CAGGGTAAATTCTTTTAAGGCCTGGGTGCCCTGCTGTGAGGTCAAAGGAGGATGGGATTAAGACTGCAGAGCCCTGGCTCCCCCATTACCTGCCAATTGCCAGCCCTTTGTTGGGGTCTCTTCTGCTTTATCTGAC
i rheMac8.chr4             C 0 C 0
s manLeu1.NW_012107142v1      56972 285 -    735854 TCCTCTGCATCAGCACCACTTCTGAACCCCCAATACTGATTGTCAGAATTTTTAACACAACTAAACATAAAACACAAGTGCATCTGCATTATGTGTGGGTGCTCTTTCGTTTTATTGTGTTTGGGGTGAGGTTATTTTAGGGCATGGTCCAGGGTAAATTCTTTTAAGGCCTGGGTGCCCTGCTGTGAGGTCAAAGGAGGATGGGACTAAGACTGCAGAGCCCTGACTCCCCCATTACCTGCCAATTGTCGGCCCTTTGTTGGGGTCTCTTCTGCTTTATCTGGC
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     574397 278 -   1771730 CCTTCTGCATCAGCACCACTCCTGGACCCCCATTCCTGTTTGTCAGAATTTTTAACATAACTAAAAATGAAAGACAAGTGCCTCTGCATTATGTGTGGGTGCTGTCTTGTTTTA-----TTTGGGGTGAGATTATTTTAGCACATGGTCCAGCGTAAATTCCTGTGAGGCCTGGGTGCCCTGCTGTGAGGTCAGAGGGCAATGGGAGTAAGACTGCAGAGCCCTGGCTCCCC-ACTACCTGCCAATTTCTGGCCCTTTG-TGGGGTCTCTTCTGCTTTCTCTGGc
i cebCap1.NW_016107755v1   I 48 I 335
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e cerAty1.NW_012002535v1     253504 994 -    863181 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=363048.000000
s hg38.chr6_GL000254v2_alt  1338387 216 +   4827813 CTGAGAGAGGCTGGGATGTTTCTGATCCTGGGGCTCCTGGTGGATGGTGCGCAGTATTTCCAGGGATGGAGGGTGCTGTGGGCACTGGTGGGAAGCTTGAGTGTCTCCACCCAGGCTTTCTTGGTGCCTCCTCATCTATTCCTTCAAATTCTAGACCTTGAGCACCAGGGCCTGGGCCCCTGACCCCCTCCTGCCCTTCCAGCAGGGCCTGGTCCA
s panTro5.chr6             30209264 216 + 175400573 CTGACAGAGGCTGGGATGTTTCTGATCCTGGGGCTCCTGGTGGATGGTGCGCAGTATTTCCAGGGATGGAGCGTGCTGTGGGCACTGGTGGGAAGCTTGAGTGTCTCCACCCAGGCTTTCTTGGTGCCTCCTCATTTATCCCTTCAAATTCTAGACCTTGAGCACCAGGGCCTGGGCCCCTGACCCCCTCCTGCCCTTCCAGCAGGGCCTGGTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30439059 216 + 173848474 CTGACAGAGGCTGGGATGTTTCTGATCCTGGGGCTCCTGGTGGATGGTGCGCAGTATTTCCAGGGATGGAGCGTGCTGTGGGCACTGGTGGGAAGCTTGAGTGTCTCCACCCAGGCTTTCTTGGTGCCTCCTCATTTATTCCTTCAAATTCTAGACCTTGAGCACCAGGGCCTGGGCCCCTGACCCCCTCCTGCCCTTCCAGCAGGGCCTGGTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     154957 216 +   2037526 CTGAGAGAGGCTGGGATGTTTCTGATCCTGGGGCTCCTGGTGGATAGTGCGCAGTATTTCCAGGGATGGAGGGTACTGTGGGCACTGGTGGGAAGCTTGAGTGTCTCCACCCAGGCTTTCTTGGTGCCTCCTCATCTATTCCTTCAAATTCTAGACCTTGAGCACCAGGGCCTGGGCCCCTGACCCCCTCCTGCCCTTCCAGCAGGGCCTGGTCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74802933 214 + 122973662 CCGAAAGAGACTGGGATGTTTCTGATCCCGGGGTTTCTGG-GGGTGGCACACAGTATTTCCAGGGATAGAGGGTGCTGTGGGCACTGGTGGGAAGCTTGGGTGTCTCCACCCAGGCTCTCTTGGTGCCTCCTCATCTGTTCCTTCAGCTTCTGGATCTTGAGCCCCAGGGCTTCAG-CCCTAACCCCCTCCTGCCCTCCCAGCAGGGCCTCATCCA
i nomLeu3.chr1a            C 0 I 12
s rheMac8.chr4             30597872 214 + 172585720 CTGAAAGAGACTGGGATGTTTCTGATCCCAGGGTT-CCGGGGGGTGGTGCACAGTATTTCCAGGGATGGAGGGTGCCATGGGCACTGGTGGGAAGCTTGAGTGTCTCCTTCCAGACTCCATCGGTACCTCCTCATCTGTTCC-TCAGCTTCTGGACCTTGAGCACCAGAGTCTGGGCCCCTGACCCCCTTCTGCCCTTCCAGCAAGGCCTAGTCAG
i rheMac8.chr4             C 0 I 12
s manLeu1.NW_012107142v1      57257 216 -    735854 CTGAAAGAGACTGAGATGTTTCTGATCCCAGGGTTCCCAGGGGGTGGTGCGCAGTATTTCCAGGGATGGAGGGTGCTGTGGGCACTGGTGGGAAGCTTGGGTGTCTTCTCCCAGGCTCTCTTGGTGCCTCCTCATCTGTTCCTTCAGCTTCTAGACCTTGAGCACCAGGGCCTGGGCCCCTGACCCCCTCCTCCCCTTCCACCAGGGCCTGGTCCA
i manLeu1.NW_012107142v1   C 0 I 12
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e cebCap1.NW_016107755v1     574675 335 -   1771730 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e cerAty1.NW_012002535v1     253504 994 -    863181 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=338052.000000
s hg38.chr6_GL000254v2_alt  1338603 160 +   4827813 GCTCCAGCAACTCCTCAGCTTGGGCCAGCTCAGCTGTGTTGGGGGCTCATGGCCCTGGTGAGGGGGAGTGGTGGAGGGAGCATCAGCCAGGGCAGGGGGCTGAGGCCCT-TGGAACCTGTATTGCAGGGTCTGGCTGTAAATGAGGAATTCTACCTCCCTT
s panTro5.chr6             30209480 160 + 175400573 GCTCCAGCAACTCCTCAGCTTGCGCCAGCTCAGCTGTGTTGGGGGCTCATTGCCCTGGGGAGGGGGAGTGGTGGAGGGAGCATCAGCCAGGGCAGGGGGCTGAGGCCCT-TGGAACCTGTATTGCAGGGTCTGGCTGTAAATGAGGAATTCTACCTCCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30439275 160 + 173848474 GCTCCAGCAACTCCTCAGCTTGCGCCAGCTCAGCTGTGTTGGGGGCTCATTGCCCTGGGGAGGGGGAGTGGTGGAGGGAGCATCAGCCAGGGCAGGGGGCTGAGGCCCT-TGGAACCTGTATTGCAGGGTCTGGCTGTAAATGAGGAATTCTACCTCCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     155173 160 +   2037526 GCTCCAGCAACTCCTCAGCTTGGGCCAGCTCAGCTGTGTGGGGGGCTCATGGCCCTGGTGAGGGGGAGTGGTGGAGGGAGCATCAGCCAGGGCAGGGGGCTGAGGCCCT-TGGAACCTGTATTGCAGGGTCTGGCTGTAAATGAGGAATTTTACCTCCCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74803159 160 + 122973662 GCTCCAGCAACTCCTCAGCTTGGGCCAGCTCAGCTGTGTGGGGGGCTCACGGCCCTGTTGAGGGGCAGTGGTGGAGGGAGCATCAGCCAGGGTAGGGGGCTGAGGCCCT-TGGAACCTGTGTTGCAGGGTCTGGCTATAAATGAGGAATTCGACCTCTTTT
i nomLeu3.chr1a            I 12 T 97587
s rheMac8.chr4             30598098 154 + 172585720 GCTCCAGCAACTCCA---CCTTGTCTAGATCAGCTGTGT-GGGGGTTCAAGG-CCTGGTGAGAGGGAGTGGTGAAAGGAGCATCAGCCA-GGCAGGGGGCTGAGGCCCTCCAAAACCTGTGTTGCAGGGTC-AGCTCTAAGGGAGGAATTCTACCCCCCTT
i rheMac8.chr4             I 12 C 0
s cerAty1.NW_012002535v1     254498 159 -    863181 GCTCCAGCAACTCCACAGCTTGGTCTAGATCAGCTGTGTGGGGGGTTCAAGGCCCTGGTGAGAGGGAGTGGTGAAAGAAGCATCAGCCAGGGCAGGGGGCTGAGGCGGT-CAAAACCTGTGTTGCAGGGTC-GGCTCTAAGGGAGGAATTCTACCTCCCTT
i cerAty1.NW_012002535v1   I 994 C 0
s manLeu1.NW_012107142v1      57485 160 -    735854 GCTCCAGCAACTCCTCAGCCTGGTCTAGCTCAGCTGTGTGTGGGGCCCATGGCCCTGGTGTGGGGAAGTGGTGAAGGGAGCATCAGCCAGGACAGGGGGCTGAGGCCCT-TGGGACCTGTGTTGCAGGGTCTGGCTGTAAATAAGGAATTCTACCTCCCTT
i manLeu1.NW_012107142v1   I 12 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e cebCap1.NW_016107755v1     574675 335 -   1771730 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=6892.000000
s hg38.chr6_GL000254v2_alt  1338763 4 +   4827813 TCCC
s panTro5.chr6             30209640 4 + 175400573 TCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30439435 4 + 173848474 TCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     155333 4 +   2037526 TCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30598252 4 + 172585720 TTCC
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     254657 4 -    863181 TTCC
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1      57645 4 -    735854 TCCC
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e cebCap1.NW_016107755v1     574675 335 -   1771730 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I
e nomLeu3.chr1a            74803319 97587 + 122973662 T

a score=268591.000000
s hg38.chr6_GL000254v2_alt  1338767 124 +   4827813 TTTTTCTAGCCCATTAGCTTAAGGCCTCCTGTACTGAGAAGCCCAGGGAGCCCCTTGTCTTGGGCATAGGCCTCTGGGGGGCAAATAGAGATCCCTGGCTCAGGGAGTATAACTGGATACCTTG
s panTro5.chr6             30209644 124 + 175400573 TTTTTCTAGCCCATTAGCTTAAGGCCCCCTGTAATGAGAAGCCCAGGGAGCCCCTTGTCTTGGGCATAGGCCTCTGGGGGGCAAATAGAGATCCCCGGCTCAGGGAGTATAACTGGATACCTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30439439 124 + 173848474 TTTTTCTAGCCCATTAGCTTAAGGCCCCCTGTACTGAGAAGCCCAGGGAGCCCCTTGTCTTGGGCATAGGCCTCTGGGGGGCAAATAGAGATCCCCGGCTCAGGGAGTATAACTGGATACCTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     155337 123 +   2037526 TTTTTCTAGCCCATTAGCTTAAGGCCCCCTGTACTGAG-AGCCCAGGGAGCCCCTTGTCTTGGGCATAGGCCTCTGGGGAGCAAATAGAGATCCCCGGCTCACGGAGTATAACTGGATACTTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74705732 123 + 122973662 TTTTTCTAGTCCATTAGCTTAAGGCCCCCTGTACTGCGAAGCCCA-GGAGCTCCTTGTCTTGGGCATAGGTGTCTGGGGGGCAGATAGAGATCCCTGGCTCAGGGAGTATAACTGGATGCCTTG
i nomLeu3.chr1a            T 97587 N 0
s rheMac8.chr4             30598256 120 + 172585720 TTTTTCTAGCCCATTAGCTTAAGG--CCCTGTATTGAGAAG-CCAGCGAGCTCCTTGCCTTGGTCATAGGCCTCT-GGGGGCAAATAGAGTTTCCTGGCTCAGGGAGTGTACCTGGATTCCTTG
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     254661 123 -    863181 TTTTTCTAGCCCATTAGCTTAAGG-CCCCTGTACTGAGAAGCCCAGCGAGCTCCTTGCCTTGGGCATAGGCCTCTGGGGGGCAAATAGAGTTTCCTGGCTCAGGGAGTGTAACTGAATTCCTTG
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1      57649 123 -    735854 TTTTGCTAGCCCATTAGCTTAAGG-CCCCTGTACGGAGAAGCCCAGCGAGCTCCTTGCCTTGGGCATAGGCCTCTGGGGGGCAAATAGAGTTTCCTGGCTCAGGGAGTGTAACTGAATTCCTTG
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e cebCap1.NW_016107755v1     574675 335 -   1771730 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=2286693.000000
s hg38.chr6_GL000254v2_alt  1338891 1029 +   4827813 AACAAGGATATGGGGTCACTGGAAAG-AGAGGACCGGCTGTCCCTCTCCGCTAAGAAATAATTAACTGTTAGATGAGGGGGAATTTCTGTTCAAGGGCTCTGTGGACTGTGCTGCTCTGGAGGGGGTGGGGAGAGAGAGCCCTGAGGTCTGAGCTGGGGTGTGGTTGGGAAGgagctgagagctcagagctg-------gaactaggcaaggagctgcaggggtgagGGTGGTGCAGGGTGGGATTTA-GAGGATTTCC-CCT-GACTCCTGTGCTGATCCCCTTCAAGTCCTCCACCCCCACCCTTGGTGT-CCGTCAACATGC-TGGGGTGACCTCATCTTCCCACTGTCCCTGGAGCTGTTCTAC-TCTTCCACGCTTGCCTTGGGGTTTTCAGAGCAGCATCTTTGTGAGTCCTGGAGAGCTAGGGACCAGGAGGGCAGGAGGAGGTGAAGACAACAGCACCAAGAGATCCTGGAAGAGAA-AGGACCATGGTAGCTGAGGCAGGGAGCAGTCTGAGTTGCCTAGAAGACACCAAGAGTTCGCTCCCTCCAGGCCTTGGCTTTGCTTCAGCACCTGGTGCTGCATAGG-CCCCACCCCTGCCCTGCTCTGCTGCCTCCACCTCCCTCTCAGCCTGGTCCCAGACAGAATCCAGACCAATTCCTGTTTCTGATGTGAAAAATGATCCTGACAGTTTAGGCAGAGCTTGCTTTAGAGCACTGGTGCCCAGCCTTCCACAGGTCTTGTGTCTGTTTTTCTTGGCACTGGGTTTCTtctcacttattcttctgaattggcaaggcaggaattacatcactagtttgcagatgaggaaactgaCTCGTATGGGCTCATTCAGCACTCACTCACTGGGCAAGTGTCTGTCAGGGCCAACTGTGGGCCAgatgtgcccagggctctatagctagctggtggaagggcctggagggttcatattcaggtccacctgacttgaaaactcatattGACCTTACTTAAGTACTGATTCCCGATTTAcaatccatgccacaaactttattg--tc
s panTro5.chr6             30209768 1035 + 175400573 AACAAGGATATGGGGTCACTGGAAAG-AGAGGACTGGCTGTCCCTCTCCGCTAAGAAATAATTAACTGTTAGATGAGGGGGAATTTCTGTTCAAGGGCTCTGTGGACTGTGCTGCTCTGGAGGGGGTGGGGAGAGAGAGCCCTGAGGTCTGAGCTGGGGTGTGGTTGGGAAGgagctgagagctgagagctgagagctgGAACTACGCAAGGAGCTGCAGGGGTGAGGGTGGTGCAGGGTGGGATTTA-GAGGATTTCC-CCT-GACTCCTGTGCTGATCCCCTTCACATCCTCCACCCCCACCCTTGGTGT-CCGTCAACATGC-GGGGGTGCCCTCATCTTCCCACTGCCCCTGGAGCTGTTCTGC-TCTTCCACGCTTGCCTTGAGGTTTTCAGAGCAGCATCTTTGTGAGTCCTGGAGAGCTAGGGACCAGGAGGGCCGGAGGAGGTGAAGACAACAGCACCGAGAGATCCTGGA-GAGAA-AGGACCATGGTAGCTGAGGCAGGGAGCAGTCTGAGTTGCTTAGAAGACACCAAGAGTTCGCTCCCTCCAGGCCTTGGCTTTGCTTCAGCACCTGGCTCTGCATAGG-CCCCACCCCTGCCCTGCTCTGCTGCCTCCACCTCCCTCTCAGCCTGGTCCCAGACAGAATCCAGACCAATTCCTGTTTCTGATGTGAAAAATGATCCTGCCAGTTTAGGCAGAGCTTGCTTTAGAGCACTGGTGCCCAGCCTTCCACAGGTCTTGTGTCTGTTTTTCTTGGCACTGGGTTTCTtctcacttattcttctgaattggcaaggcaggaattacatcaccagtttgcagatgaggaaactgactcatatgggttCATTCAGCACTCACTCACTGGGCAAGTGTCTGTCAGGGCCAACTGTGGGCCAgatgtgcccagggctctacagctagctggtggaaaggcctggagggttcatattcaggtccacctgacttgaaaactcatattGACCTTACTTAAGTACTGATTTCCGATTTAcaatccatgccacaaactttactg--tc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30439563 1022 + 173848474 AACAAGGATATGGGGTCACTGGAAAG-AGAGGACCGGCTGTCCCTCTCCGCTAAGAAATAATTAACTGTTAGATGAGGGGGAATTTCTGTTCAAGGGCT-------CTGTGCCGCTCTGGAGGGGGTGGGGAGAGAGAGCCCTGAGGTCTGAGCTGGGGTGTGGTTGGGAAGgagctgagagctgagagctg-------gaactaggcaaggagctgcaggggtgagGGTGGTGCAGGGTGGGATTTA-GAGGATTTCC-CCT-GACTCCTGTGCTGATCCCCTTCATCTCCTCCACCCCCACCCTTGGTGT-CCGTCAACATGC-GGGGGTGCCCTCATCTTCCCACTGCCCCTGGAGCTGTTCTGC-TCTTCCATGCTTGCCTTGGGGTTTTCAGAGCAGCATCTTTGTGAGTCCTGGAGAGCTAGGGACCAGGAGGGCAGGAGGAGGTGAAGACAACAGCACCGAGAGATCCTGGAAGAGAA-AGGACCATGGTAGCTGAGGCAGGGAGCAGTCTGAGTTGCCTAGAAGACACCAAGAGTTTGCTCCCTCCAGGCCTTGGCTTTGCTTCAGCACCTGGCTCTGCATAGG-CCCCACCCCTGCCCTGCTCTGCTGCCTCCACCTCCCTCTCAGCCTGGTCCCAGACAGAATCCAGACCAATTCCTGTTTCTGATGTGAAAAATGATCCTGCCAGTTTAGGCAGAGCTTGCTTTAGAGCACTGGTGCCCAGCCTTCCACAGGTCTTGTGTCTGTTTTTCTTGGCACTGGGTTTCTtctcacttattcttctgaattggcaaggcaggaattacatcaccagtttgcagatgaggaaactgactcatatgggttCATTCAGCACTCACTCACTGGGCAAGTGTCTGTCAGGGCCAACTGTGGGCCAgatgtgcccagggctctacagctagctggtggaaaggcctggagggttcatattcaggtccacctgacttgaaaactcatattGACCTTACTTAAGTACTGATTTCCGATTTAcaatccatgccacaaactttactg--tc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     155460 1027 +   2037526 AACAAGGATATGGGGTCATTGGAAAG-AGAGGACCGGCTGTCCCTCTCCGCTAAGAAATAATTAACTGTTAGATGAGGGGGAATTTCTGTTCAAGGGCTCTGTGGACTGTGCTGCTCTGGAGGGGGTGGGGAGACAGAGCCCTGAGGTCTGGGCTGGGGTGTGGTTGGGAAGgagctgagagctgagagctg-------gaactaggcaaggagctgcaggggtgagGGTGGTGCAGGGTGGGATTTA-GAGGATTTCC-CCCAGACTCCTGTGCTGATCCCCTTCATCTCCTCCACCCCCACCCTTGGTGT-CCGTCGACATGCGGGGGGTGACCTCATCTTCCCACTGCCCCTGGAGCTGTTCTGC-TCTTCCATGCTTGCCTTGCGGTTTTCAGAGCAGCATCTTTGTGAGTCCTGGAG-GCTAGGGA-CAGGAGGGCCGGAGGAGGTGAAGACAACAGCACCGAGAGATCCTGGAAGAGAA-GGGACCATGGTAGCTGAGGCAGGGAGCAGTCTGAGTTGCCTAGAAGACACCAAGAGTTCGCTCCCTCCAGGCCTTGGCTTTGCTTCAGCACCTGGCTCTGCATAGG-CCCCACCCCTGCCCTGCTCTGCTGCCTCCACCTCCCTCTCAGCCTGGTCCCAGACAGAATCCAGACCAATTCCTGCTTCTGATGTGAAAAATGATCCTGCCAGTTTAGGCAGAGCTTGCTTTAGAGCACTGGTGCCCAG-CTTCCACAGGTCTTGTGTCTGTTTTTCTTGGCACTGGGTTTCTtctcacttattcttctgaattggcaaggcaggaattacatcactagtttgcagatgaggaaactgactcaTATGGGCTCATTCAGCACTCACTCACTGGGCAAGTGTCTGTCAGGGCCAACTGTGGGCCAgatgtgcccagggctctatagctagctggtggaaaggcctggagggttcatattcaggtccacctgacttg-aaactcatattGACCTTACTTAAGTACTGATTCCCGATTTAcaatccatgccacaaactttactg--tc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74823238 1030 + 122973662 AACAAAGATATGGGGTCAATGGAAAG-A-AGGACCGGCTGTCCCTCCCCACTAAGAAATGATTAACTTTTAGATGAGGGGGAATTCCTGTTCAAGGACTCTGTGGACTGTGCTGCTCTGGAGGGGGTGGGAAGAGGGAGCCATGAGGTCTGGGCTGGGATGTGCTTGGGAAGGAGCTGAGAGCTGAGAGCTG-------TAACTACGCAAGGAGCTGCAGGGGTGAGGTTGGTGCAGCGCGGGATTTA-GAGGCTTTCC-CCCACACTCCTGTGCTGATCCCCTTCATCTCCTCCACCCCCACCCTTGGTGT-CCGTCAACATAC-GGGGGTGCCCTCATCTTCCCACTGCCCCTGGAGCTGTTCTGC-TCTTCCATGCTTGCCTTGGGGTTTTCAGAGCAGCATCTTTGTGAGTCCTGGAGTGCTAGGGACCAGGAGGGCAGGAGGAGGTGAAGACAACAGCACCGAGAGATCCTGGAAGAGAA-AGGACCATGGTGGGTGAGGCAGGGAGCAGTCTGAGTTGCCCAGAAGACACCAGGAGCCAGCTCTCTGCAGGCCTTGGCTTTGCTTCAGTGCCTGGCCCTGCATAGGCCCCCGCCCCTGTCCCGCTCTGCTGCCCCCATCTCCCTCTCAGACTGGCCTCAGACAGAATCCAAACCAACTCCTGTTTCTGATGTGAAAAATGTTCCTGCCAGTTTAGGCAGAGCTTGCTTTAGAGCACTGGTGCCCAGCCTTCCACAGGTCTTGTGTCTGTTTTTCTTGGCACTGTGTTTCTtctcacttatttttctgaattggcaaggcaggaattacatcactggtttgcagaggaggaaactgactcatatgggttCATTCAGCACTCACTCACTGTAAAAGTGTCTGTCAGGGACAACTGTGGGCCAgatgtgcccagggctctacagctagctggtagaagggcctggagggttcatattcaggtccatctgacttgaaaacTGATATTGACCTTACTTAAGTACTGATTCCCGCTTTAcaatccatgccacgaactttattg--tc
i nomLeu3.chr1a            N 0 C 0
s rheMac8.chr4             30598376 1012 + 172585720 AACAAGGATAT-GGGTCACTGGGAAGTAGAGGAT---CTGTACCTCCCCACTAGAGAATAATTAACTGTTAGATGA-GGGGAATTCCTGTTCAGTGACTCTGT-GTCTGTGCTGCTCTGGAGGGGGGCGGGAGAGGGAGCCGTGAGGTCTGGGCTGA-GTGGGGGTGGGAGAGCT---AGAGCTGAGAGCTG-------TAACTAGGCAAGGAGCTGCAGGGGTGAGGTTGGTGCA-GGTGGGATTTACGAGGATAATC-CCC-GA-TCCTGTGCTGAT-CCCTCCAAATTC-CCACCCTC-CCCTTGCTGTCCCGTCAACATGT-GGGGGTGACCTCATCTTCCCACTGCCCTCGGAGC-GTTCTGCTTCTTCCATGCTTGCCTTGGGGTTTCCAGAGCAGCAACTTTGTGAGTCCTGGAGTGCTAGGGACCAGGA-GGCAGGTGGAGGTGAAGA-AGTAGCACTAAGAAAGCCTTGAAGAGGGAAAAACCATGGTGTGTGAGGCAGGGAGCAGTCTGAGTTGCCCAGAAGACAGTCGGAGACCGCTCTCTCCAGGCCTTGGCTTTACTTCAGTGCCTGGCCCTGCATCGG-TCCCACGCCTGCCCTGCTCTGCTGCCTCCACCTCCCTCTCAGCCTGGTCTCAGACACAATCCAGACCAACTCCTGTTTCTGATGTGAAAAATGTTCCTGTCAGTTTAGGCAGAACTTGCTTCAGAGCACTGGTGCCCAGCCTTCCACAGGTCTTGTGTCTGTTCTTCTCGGCACTGTGTTTCTtctcatgtattcttctgaattggcaaggcaggaattacatcactggtttgcagatgaggaaacggactcatataggttCATTCAGCACTCACTTACTGGGCAAGTGTCTGTCAGGGCCAACTGTGGGCCAGATGTGCCCAGGGCTCTATAGCTAGCTGGTGGAAGGGCCTGGAGGGTTCATATTCAGGTTCAC--AGATTGAAAACTCATATTGACCTTACTTAAGCACTGATTCCCGCTTTAcaatccatgccacaaactttattg----
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     254784 1024 -    863181 AACGAGGATATGGGGTCACTGGGAAG-AGAGGACCGGCTGTACCTCCCCACTAAGAAATAATTAACTGTTAGATGAGGGGGAATTCCTGTTCAGTGACTCTGTGGTCTGCGCTGCTCTGCAGGGGGTGAGGAGAGGGAGCCctgaggtctaggctgaggtgtggttgggaaggatctgagagctgagAGCTG-------TAACTAGGCAAGGAGCTGCAGGGGTGAGGTTGGTGCAGGGTGGGATTTA-GAGGATACTCTCCC-GACTCCTGTACTGATCCCCTTCACATCCTCCACCCCCACCCTTGGTAT-CCATCACCATGT-GAGGGTGACCTCATCTTCCCACTGCCCTTGGAGCTGTTCTGC-TCTTCCATGCTTGCCTTGGGGTTTTCAGAGCAGCAACTTTGTGAGTCCTGGAGTGCTAGGGACCAGGAGGGCAGGAGGAGGTGAAGACAACAGCACTAAGAGAGCCTTGAAGAGGG-AAAACCATGGCGTGTGAGGCAGGGAGCAGTCTGAGTTGCCCAGAAGACAGTCGGAGACCGCTCTCTCCAGGCCTTGGCTTTACTTCAGtgcctggccctgcacagg-ccccgcgcctgccctgctctgcTGCCTCCACCTCCCTCTCAGCCTGGTCTCAGACACAATCCAGACCAACTCCTGTTTCTGGTGTGAAAAATGTTCCTGTCCGTTTAGGCAGAACTTGCTTCAGAGCACTGGTACCCAGCCTTCCACAGGTCTTGTGTCT----TTCTCGGCACTGTGTTTCTtctcatgtattcttctgaattggcaaggcaggaattacatcactggtttgcagatgaggaaactgactcatacgggttCATTCAGCACTCACTCACTGGGCAAGTGTCTGTCAGGGCCAACTGTGGGCCAgatgtgcccagggctctatagctagctggtggaagggcctggagggttcatattcaggttcac--agattgaaaactcatattggccttactgaagcacTGGTTCCTGCTTTAcaatccatgccacaaactttattgtc--
i cerAty1.NW_012002535v1   C 0 N 0
s manLeu1.NW_012107142v1      57772 1025 -    735854 AACAAGGATATGGGGTCACTGGGAAG-AGAGGACCGGCTGTACCTCCCTGCTAAGAAATAAATAACTGTTAGGTGAGGGGGAATTCCTGTTCAGTGACTCTGTGGTCTGTGCTGCTCTGGAGGGGGCAGGGAGAGGGAGCCGTGAGGTCTGGGCTGAGGTGGGGGTGGGAAGgagctgagagctgagagcta-------taactaggcaaggagctgcaggggtgagGTTGGTGCAGGGTGGGATTTA-GAGGATACTCCCCT-GACTCCTGTGCTGATCCCCTTCACATCCTCCACCCCCACCTTTGGTGT-CCATCAACATGT-AGGGGTGACCTCATCTTCCCCCTGCCCTCGGAGCTGTTCTGC-TCTTCCATGCTTGCCTTGGGGTTTTCAGAGCAGCAACTTTGTGAGTCCTGGAGCGCTAGGGACCAGGAGGGCAGGAGGAGGTGAAGACAATAGCAGTAACAGAGCCTTGAAGAGGG-AAAACCATGGTGTGTGAGGCAGGGAGCAGTCTGAGTTGCCCAGAAGACAGTCGGAGACCGCTCTCTCCAGGCCTTGGCTTTACTTCAGTGCCTGGCCCTGCACAGG-CCCCACGCCTGCCCTGCTCTGCTGCCTCCTCCTCCCTCTCAGCCTGGTCTCAGACACAATCCAGACCAACTCCTGTTTCTGATGTGAAAAATGTTCCTGTCCGTTTAGGCAGAACTTGCTTCAGAGCACTGGTGCCCAGCCTTCCACAGGTCTTGTGTCTGTTTTTCTTGGCACTGTGTTTCTTCTCATGTATTCTTCTGAATTggcaaggcaggaattacatcactggtttgcagatgaggaaacagactcatacgggttCATTTAGCACTCACTCACTGGGCAAGTGCCTGTCAGGGCCAACTGTGGGCCAGATGTG-CCAGGGCTCTATAGCTAGCTGGTGGAAGGGCCTGGAGGGTTCATATTCAGGTTCAC--AGATTGAAAACTCATATTGACCTTACTGAAGCACTGGTTCCTGCTTTAcaatccatgccacaaactttattg----
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e cebCap1.NW_016107755v1     574675  335 -   1771730 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=45717.000000
s hg38.chr6_GL000254v2_alt  1339920 27 +   4827813 atatctaaagaagttgccacagcagcc
s panTro5.chr6             30210803 27 + 175400573 atatctaaagaagttgccacagcagtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30440585 27 + 173848474 atatctaaagaagttgccacagcagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     156487 27 +   2037526 atatctaaagaagttgccacagcagtc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74824268 27 + 122973662 atatctaaagaagttaccacagcagcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30599388 24 + 172585720 ---tcttaagaagttgccacagcagcc
i rheMac8.chr4             C 0 N 0
s manLeu1.NW_012107142v1      58797 24 -    735854 ---tcttaagaagttgccacagcagcc
i manLeu1.NW_012107142v1   C 0 I 78493
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e cebCap1.NW_016107755v1     574675 335 -   1771730 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=59548.000000
s hg38.chr6_GL000254v2_alt  1339947 65 +   4827813 tttagcaaccaccctcctgatcagccaatagtcaacactgaggcaagaccctcccccagcaaaaa
s panTro5.chr6             30210830 65 + 175400573 tttagcaaccaccctcctgatcagccaatagtcaacactgaggcaagaccctcccccagcaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30440612 65 + 173848474 tttagcaaccaccctcctgatcagccaatagtcaacactgaggcaagaccctcccccagcaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     156514 64 +   2037526 tttagcaaccaccctcctgatcagccgatagtcaacactgaggcaagaccctcccccagc-aaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74824295 65 + 122973662 tttagcaaccaccctcctgatcagccaatagtcaacactgaggcaagaccctcccccagcaaaaa
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e cebCap1.NW_016107755v1     574675 335 -   1771730 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=27313.000000
s hg38.chr6_GL000254v2_alt  1340012 24 +   4827813 gattagcaaaacctccacaccctc
s panTro5.chr6             30210895 24 + 175400573 gattagcaaaacctccacaccctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30440677 24 + 173848474 gattagcaaaacctccacaccctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     156578 24 +   2037526 gattagcaaaacctgcacaccctc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74824360 24 + 122973662 gatGagcaaaacctccccaccctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30470884 24 + 172585720 gatcagcaaaacctccttattctt
i rheMac8.chr4             N 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e cebCap1.NW_016107755v1     574675 335 -   1771730 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=200698.000000
s hg38.chr6_GL000254v2_alt  1340036 127 +   4827813 tctcaggatgttcctgcacctcacagctacagcagcaacctggtctccctgaggacacgaccccctccaaagtcctcccacatgggggagttttcccagggacttgtacccctgggttcagaggtga
s panTro5.chr6             30210919 127 + 175400573 tctcaggatgttcctgcacctcacagctccagcagcaacctggtctccctgaggacatgaccccctccaaagtcctcccacatgggggagttttcccagggacttgtacccctgggttcagaggtga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30440701 127 + 173848474 tctcaggatgttcctgcacctcacagctacagcagcaacctggtctccctgaggacatgaccccctccaaagtcctcccacatgggggagttttcccagggacttgtacccctgggttcagaggtga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     156602 125 +   2037526 tctcaggatgttcctgcacctcacagctacagcagcaacctggtctccctgaggacagga-cccctccaaagtcctcccacatgggggagttttcccagggacttgta-ccctgggttcagaggtga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74824384 127 + 122973662 tctcaggatgctcctgcatctcacagctgcagcaacaacctggtctccctgaggacatgaccccctccgaagtcatcccacatggaggagtttccccaggaacttgtacccctgggttcagaggtga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30470908 126 + 172585720 tctcaggatgttccatcaccttgaagctctagcaggaaccaggtcttcctgaggatgtggccccctctgaagttcatccgtatggggaagttt-cccaggaacttgtacccctgggttcagagctga
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     130693 126 -    863181 tctcaggatgttccgtcaccttgaagctctagcaggaaccgggtcttcctgaggatgtggccccctctgaagttcatccgtatgggggagttt-cccaggaacttgtacccctgggttcagagctga
i cerAty1.NW_012002535v1   N 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e cebCap1.NW_016107755v1     574675 335 -   1771730 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=547462.000000
s hg38.chr6_GL000254v2_alt  1340163 251 +   4827813 ggtggggtccttgctcctcact-gtggttctcacacctttctccctccctcctccct-aaacccctaagctgtcagcagattagggccccattccccatgttgtagccattccctt---tgtgccccaagccattcctcttaatcctgacccttgtagctcctggttcactgtcaccctctccagcagtgc-gtctccttgactcttggtgacttcaacatacgcagatgtggtgggctgagtaatggtccccaaag
s panTro5.chr6             30211046 252 + 175400573 ggtggggtccttgctcctcgct-gtggttctcacacctttctccctccctcctccct-aaacccctaagctgtcagcagattagggccccattccccatattgtagccattccctt---tgtgccccaagccattcctcttaatcctgacccttgtagctcctggttcactgtcaccctctccagcagtgctgtctccttgactcttggtgacttcaacatacgcagatgtggtgggctgagtaatggtccccaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30440828 252 + 173848474 ggtggggtccttgctcctcact-gtggttctcacacctttctccctccctcctccct-aaacccctaagctgtcagcagattagggccccattccccatgttgtagccattccctt---tgtgccccaagccattcctcttaatcctgacccttgtagctcctggttcactgtcaccctctccagcagtgctgtctccttgactcttggtgacttcaacatacgcagatgtggtgggctgagtaatggtccccaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     156727 252 +   2037526 ggtggggtccttgctcctcactggtggttctcacacctttctccct-cctcctccct-aaacccctaagctgtcagcagattagggccccattccccatattgtagccattccctt---tgtgccccaagccattcctcctaatccggacccttgtagctcctggttcactgtcaccctctccagcagtgctgtctccttgactcttggtgacttcaacatacacagatgtggtgggctgagtaatggtccccaaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74824511 250 + 122973662 ggtggggtccttgctcctcact-gtggttctcacacctttctccctccctcctccct-aaacccctaagctgtcagcagattggggacccattccccatattgtagccattccctg---tgggccccaagccattcctcttgatcctgacccttgtagctcctggttcactgtcaccctctccagcagtgctgtctcctcgactc--ggtgacttcaacatacacaGAtgtggtgggctgagtaacagtccccaaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30471034 253 + 172585720 ggtggggtccttgctcctcact-gtggttctgagacctttctgcctccttcctccctaaaacccctaagctgtcatcagactagggccccattcccctcattgtggtcattccctg---tgggccccaggccgttcctgtcaatcctgactcttgtagctcctggatcaccatcaccctcttcagcagggctgtctccttaattctttgtgacttcgacatatgcagatatggtgggctgagtactggtccccaaag
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     130819 253 -    863181 ggtggggtccttgctcctcact-gtggttctgagacctttctgcctccctcctccctaaaacccctaagctgtcatcatactagggccccattcccctcattgtggtcattccctt---tgggccccaggccgttcctgtcaatcctgactcttgtagctcctggatcaccatcaccctcttcagcagggctctctccttaattctttgtgacttcgacatATGCAGAtgtggtgggctgagtactagtccccaaag
i cerAty1.NW_012002535v1   C 0 C 0
s cebCap1.NW_016107755v1     575010 256 -   1771730 ggtggggtccttgctctccact-gtggttctcagacctttctgcctcccctctccctaaaacccctaagctgtcatcagtttatggtcccactcccctcactgcagccattccccgtgatgggtcccaggccgttactctcaatcctgactcttgtagctcctggttcacagtcactcactccagcagggctctctcctcgatccttggtgtgttcaatatATGCAGAtgtgatgggctgagcgatggtccccaaag
i cebCap1.NW_016107755v1   I 335 I 45
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=71173.000000
s hg38.chr6_GL000254v2_alt  1340414 49 +   4827813 atgtccaggcttaatcgttgg-aacatgtgaataggttgcattgcatggc
s panTro5.chr6             30211298 49 + 175400573 atgtccaggcttaagccttgg-aacatgtgaataggttgcattgcatggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30441080 49 + 173848474 atgtccagtcttaatcgttgg-aacatgtgaataggttgcattgcatggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     156979 50 +   2037526 atgtccaggcttaagccttggaaacatgtgaataggttgcattgcatggc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74824761 49 + 122973662 atgtccagtcttaatccttgg-aaagtgtgaataggttgcattgcatggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30471287 48 + 172585720 aggtccagtctaagtccttgg-aac-tgtgaacaggttgcattacatggc
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     131072 48 -    863181 aggttcagtctaagtccttgg-aac-tgtgaacagcttgcattacatggc
i cerAty1.NW_012002535v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e cebCap1.NW_016107755v1     575266 45 -   1771730 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=829296.000000
s hg38.chr6_GL000254v2_alt  1340463 404 +   4827813 aaaagggacattaatcatgtaatgaagattaaggaccttaaaatagggagagtatcctggactatctgcgtgggcccaatcaaatcacatgagccatt-aaaagcagagaaactgccctggctggagtcagattctgcagaagaggaa-acagaggagaagctggagagaggaggtcagatgttccaagcaggagga-ctggatgtgccttaggcgccatgtgtgagtacctgagagaaaactctaggagctaagggtggctcttaacaaggaagtggaaatctctgttctatctgcaaggaagtgaattcagacaagaacttgaatgagcttggaagtggattcttccccag--tctccaggaaggaatgcaggccttcccgtacattgatcttagccccatgagact
s panTro5.chr6             30211347 406 + 175400573 aaaagggacattaatcatgtaatgaagattaaggaccttaaaatagggagagtatcctggactatctgtgtgggcccaatcaaatcacatgagccatt-aaaagcagagaaactgccctggctggagtcagattctgcagaagaggaa-acagaggagaagctggagagaggaggtcagacgttccaagcaggagga-ctggatgtgccttaggcaccatgtgtgagtacctgagagaaaactctaggagctaagggtggctcttaacaaggaagtggaaatctctgttctatctgcaaggaagtgaattcagacaagaacttgaatgagcttggaagtggattcttccccagagtctccaggaaggaatgcaggccttcccatacattgatcttagccttatgagact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30441129 404 + 173848474 aaaagggacattaatcatgtaatgaagattaaggaccttaaaatagggagagtatcctggactatctgtgtgggcccaatcaaatcacatgagccatt-aaaagcagagaaactgccctggctggagtcagattctgcagaagaggaa-acagaggagaagctggagagaggaggtcagacgttccaagcaggagga-ctggatgtgccttaggcgccatgtgtgagtacctgagagaaaactctaggagctaagggtggctcttaacaaggaagtggaaatctctgttctatctgcaaggaagtgaattcagacaagaacttgaatgagcttggaagtggattcttccccag--tctccaggaaggaatgcaggccttcccgtacattgatcttagccttatgagact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     157029 404 +   2037526 aaaagggacattaatcatgtaatgaagattaaggaccttaaaatagggagagtatcctggactatctgtgtgggcccaatcaaatcacatgagccattaaaaagcagagaaactgccctggctggagtcagattctgcagaagagg-a-acagaggagaagctggagagaggaggtcaggagttccaagcaggagga-ctggatgtgccttaggcgccatgtgtgagtacctgagagaaggctctaggagctaagggtggctcttaacaaggaagtggaaatctctgttctatctgcaaggaagtgaattcagacaagaacttgaatgagcttggaagtggattcttccccag--tctccaggaaggaatgcaggccctcccgtacattgatcttagccctatgagact
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74824810 406 + 122973662 aaaagggatattactcatgtaatgaagattaaggaccttaaaatagggagagtatcctggactctctgtgtgggcccagtcaaaacacatgggccatt-aaaagcagagaaacagccc-ggctggagtcagattctgcagaggaggaaggcagaggagacacaaaagaggggaggtcagaagttccaagcaggagga-ttggatgtgccttaggcgctatgtgtgagtgcctgagagaagtctctgggagctaagggtggctcttaacaagcaagtggaaacttctattctatcggcaaggaagtgaattcagacaagaatctgaatgagcttggaagtggattcttccccagagtctccaggaaggaatgcaggctttcccgtacgttgatcttagccccatgagact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30471335 408 + 172585720 aaaagtgtcattactcatgtaatgaagataaaggactttaaaatagggagattatcctagactttctgtgtgggctcaatcaaatcacatgagccatt-aaaagtagagaatctgctctggatggagtcagatgctgcagaggaggaaggcagaggaggcacagcaaaggggagatcagaggttccaagcaggaggatttggatgtgctttaggcaccatatgtgagtagcagagagaagtctctaggagctaagggtggctcccaacaagaaagtgggaagctctgttctatatgcaaggaggtgaatgcagacaagaacctgaatgagcttggatgtggattcttccccagaatctccaggaaggaacacagacctgcccataacacgatcttagccccatgagact
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     131120 406 -    863181 aaaagtgtcattactcatgtaacgaagataaaggactttaaaatagggagattatcctggactctctgtgt-ggcccaatcaaatcacatgagccact-aaaagtagagaatctgctctggatggagtcagatgctgcagaggaggaaggcagaggagacacagcaaaggggagatcagaggttccaagcaggagga-ttggatgtgctttaggcaccatacgtgagtagcagagagaagtctctaggagctaagggtggctcccaacaagaaagtgggaagctctgttctctctgcaaggaggtgaatgcagacaagaacctgaatgagcttggatgtggattcttccccagaatctccaggaaggaacacagacctgcccataccatgatcttagccccatgagacc
i cerAty1.NW_012002535v1   C 0 C 0
s cebCap1.NW_016107755v1     575311 395 -   1771730 aaaataaacattattcatgtaacaaagattaaggaccttaaaatagggagattatcc-agactatctgtgcgggcccaatcaaatcacatgaggcatt-aaaag--------ctgctctggctggagtcagctgctgcagaagaagaaggcagaggagacacagcagaggggaagtcagaggttccaagtgggagga-ttggatgtgtcttaggggccaattgtgaggacccgagagagggctcgaggagtccgagatgtcagccagcaaggaagtggggacctcagtcctctctgcacaga-gtgaattccaataagaacctgaataagcttggaagtgcagtcctccccag--tctccatgaaggagcacagacctgcccagatcttgattttactcctgtgagact
i cebCap1.NW_016107755v1   I 45 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=1316982.000000
s hg38.chr6_GL000254v2_alt  1340867 493 +   4827813 gtg-tggacttgcaacccacatgactgtgacatgataattaggtgctgtttaaagccacttggtttgtggtaatttttatg------gcagcaacagacacctatacagcagagaagatgcccttgctccctggactctcagatcctgtaactcctctcctccatgaccttctcctctctctgcctgaatctcatgcccttgtcatcccctaggcctcatcacggccaagaaccccagcccttccatactctcaatctcacacttcccactctctggccatctttccactcatccccttgcaaggtggccacaggctctgatgacacagacactatca-ttttatcatatgctgtgatgtaatatcaatgaaccactcatttcctatgtgcctgcattccaggcttggagtccaccctgtggtacatcaattccaacaatccttccagcccactgggattcccaattgagtgatcctgccatctactccctgtcactcacc
s panTro5.chr6             30211753 493 + 175400573 gtg-tggacttgcaacccacatgactgtgacatgataattaggtgctgtttaaagccacttggtttgtattaatttttatg------gcagcaatagacacctatacagcagagaagatgctcttgctccctggactctcagatcctggaactcctctcctccatgaccttctcctgtctctgcctgaatctcatgcccttgtcatcccctaggcctcatcacggccaagaaccccagcccttccatactctcaatctcacacttccccctctctggccatctttccactcatccccttgcaaggtggccacaggctctgaggacacagacactatca-ttttatcatatgctgtgatgtaatatcagtgaaccactcatttcctatgtgcctgcattccaggcttggagtccaccctgtggtacatcaattccaacaatccttccagcccactgggattcccaattgagtgatcctgccatctactccctgtcactcacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30441533 492 + 173848474 gtg-tggacttgcaacccacatgactgtgacatgataattacgtgctgtttaaagccacttggtttgtg-taatttttatg------gcagcaatagacacctatacagcagagaagatgctcttgctccctggactctcagatcctggaactcctctcctccatgaccttctcctgtctctgcctgaatctcatgcccttgtcatcccctaggcctcatcacggccaagaaccccagcccttccatactctcaatctcacacttcccactctctggccatctttccactcatccccttgcaaggtggccacaggctctgaggacacagacactatca-ttttatcatatgctgtgatgtaatatcagtgaaccactcatttcctatgtgcctgcattccaggcttggagtccaccctgtggtacatcaattccaacaatccttccagcccactgggattcccaattgagtgatcctgccatctactccctgtcactcacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     157433 492 +   2037526 gtg-tggacttgcaacccacatgactgtgacatgataattaggtgctgtttaaagccacttggtttgtgttaatttttatg------gcagcaatagacacctatacagcagagaagatgcccttgctccctggactctcagatcctggaactcctct-ctccatgaccttttcctctctctgcctgaatctcatgcccttgtcatcccctaggcctcatcacggccaagaaccccagcccttccatactctcaatctcacacttcccactctctggccatctttccactcatccccttgcaaggtggccacaggctctgaggacacagacactatca-ttttatcatatgctgtgatgtaatatcagtgaaccactcatttcctatgtgcctgcattccaggcttggagtccaccctgtagtacatcaattccaacaatccttccagcccactgggattcccaattgagtgatcctgccatctactccctgtcactctcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74825216 489 + 122973662 ggc-tggacttgcaacccacatgactgtgacatgataattaggtgctgtttaaagccatttggattgtggtaa-ttttatg------gcagcaatagatacccatacaGcagagaagatgccctcactccttggcctctcagatcctggaactcctctcctccatgatcttctc---tctctgcctgaatctcatgcccttgttatcctctaggcctcatcatggctaagaaccccagtccttccatactgtcaatctcacacttcccactctctgaccgtctttccactgatccccttgcacggaggccacaggctctgaggacactgatactatca-ttttatcatatgttgtgacataatatcagtgaaccactcgtcgcctatgtacctgctttccaggcttggagtccaccctgtagtacatcaattccaacaatccttccaccccactgggattcccagtcaagtgatcctgccatctactccctgtccctcact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30471743 491 + 172585720 atg-tagacttgcagcccacaggactgtggcatgataattaggtgctgtttaaagctgcttggtttgtggtaatttttatg------gcaacaatagacacctatacagcagagaagatgtccatgccccatggcctctcc-atcctggaactcctttccttcataaccatgtcctctctctgcctgaatctcatgcccttcttatccactaggtctcctcatggcaaagaaccccagcccttccatactctcaatttcacacttcccactctctgaccatctttcctctcat-cccttgcagggtagtcacagactctgaggacactgacactatta-ttttatcatatactgtgatgtaatatcagtgaaacactcattgcttatgtgcctgctttccaggcgtggagtcccttgtgtagtatgttgattctaacaatctattcacccccttgagattcctagtcaagtgaccctgccatatactctctctccctcagt
i rheMac8.chr4             C 0 I 22
s cerAty1.NW_012002535v1     131526 491 -    863181 gtg-tggacttgcagcccacaggattgcggcatgataattaggtgctgtttaaagctgcttggtttgtggtaatttttatg------gcagcaatagacacctaTGCAGcagagaagatgtccatgccccatggcctctcc-atcctggaactcctttccttcataaccatgtcctctctctgcctgaatctcatgcccttcttatccactaggtctcctcatggcaaagaaccccagcccttccatactctcaatttcacacttcccactctctgaccatctttccactcat-ccctTGCAGGGTAGTCACAGGCTCTGAGGACACTGACACTATTA-TTTTATCATATACTGTGATGTAATATCAGTGAAACACTCATTGCTTATGTGCCTGctttccaggcgtggagtcccttgtgtagtatgttgattctaacaatctattcacccccttgagattcctagtcaagtgaccccgccatatactctctctccctcagt
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29182804 498 -  71996105 gtg-tggtcttgcaaccgacacgactgtaacatgataattaggtgctgtttaaagccacttggtttgtggtaatttttatggctatagcagcaatagacacccatacaGCAGAGAAGATGCCCTCTCTccctggcctctcagatcctggaactcctctcttccctgacgttctcctctctctgcctgaatctcgtgcccttgtcatcccctaggcctcatcatgcccaagaaccccaacccttccatgctctcaatctcgcacttccccccgtctggccatcTTTCCATTCAT-CCCATGCAAGGTGGCCACAGGCTCTGAGGACACAGATACTATCATTTTTTTCATATGCTGTGATGTAATATCAGtg-actactcattgcctatgtgcctgcattccaggcttgaagtccgttctgcagtacatcaattcgaacaatccttccaccccactgagattcccaatctagtgatcctgccatctactccctgttactcacc
i chlSab2.chr17            N 0 C 0
s cebCap1.NW_016107755v1     575706 487 -   1771730 gtgttggacttgcatcccacatggtcgtgacatgataaacaggtgctgtttaaagccactgggcttgtgttaatttttatg------gcagaaattgaCACCCATAGAGcagagaggatgccctctttccctggcctctcagaatctgggactcctctcttccatgaccttctcc--tctctgcctgggccccacacccttgtcacctcctcagtcttgtcatagccaaggaccctagcccttccatactctccatctcacacctcccactctctgaccatctttccactcaaccccttgcagggcgggcacaggctctgaggacacag-----atca-ttttatcgtatgctatgatgtaatatcactgaaccacacattacatatgtgcctgctttccaggcttggagtccaccctgcagtatatcagttccaacaatccttccaccccgctgggattcccaatctagtgatcctgccatctactcactgtccctcacc
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=13496.000000
s hg38.chr6_GL000254v2_alt  1341360 5 +   4827813 cttgg
s panTro5.chr6             30212246 5 + 175400573 cttgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30442025 5 + 173848474 cttgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     157925 5 +   2037526 cttgg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74825705 5 + 122973662 cttgg
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     132018 5 -    863181 cttgg
i cerAty1.NW_012002535v1   I 1 I 11
s chlSab2.chr17            29183302 5 -  71996105 cttgg
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1     576193 5 -   1771730 cttgg
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I
e rheMac8.chr4             30472234 22 + 172585720 I

a score=34065.000000
s hg38.chr6_GL000254v2_alt  1341365 18 +   4827813 tgtcctctcctccctctt
s panTro5.chr6             30212251 18 + 175400573 tgtcctctcctccctctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30442030 18 + 173848474 tgtcctctcctccctctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     157930 18 +   2037526 tgtcctctcctccctctt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74825710 18 + 122973662 tgtcttctcctccctcct
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            29183307 18 -  71996105 tgtcctctcctccctcct
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1     576198 18 -   1771730 tgtcctctcctccctcct
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e cerAty1.NW_012002535v1     132023 11 -    863181 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I
e rheMac8.chr4             30472234 22 + 172585720 I

a score=5684.000000
s hg38.chr6_GL000254v2_alt  1341383 5 +   4827813 ctccc
s panTro5.chr6             30212269 5 + 175400573 ctccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30442048 5 + 173848474 ctccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     157948 5 +   2037526 ctccc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74825728 5 + 122973662 ctctc
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     132034 5 -    863181 cacac
i cerAty1.NW_012002535v1   I 11 C 0
s chlSab2.chr17            29183325 3 -  71996105 --tac
i chlSab2.chr17            C 0 I 2
s cebCap1.NW_016107755v1     576216 5 -   1771730 caccc
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I
e rheMac8.chr4             30472234 22 + 172585720 I

a score=534079.000000
s hg38.chr6_GL000254v2_alt  1341388 206 +   4827813 attttgaattctacagtaaataatttcaatccctcccttgcctctcccttgcattgtcatactcacctggcaaaactacacagctggtgggttccacctctgtctatgctgcacctgcccca-tgagctgcaggaggctggacagcagcacacaacatgctgactggtctc------tttaagattccaaacctcatggggagcccctaccat
s panTro5.chr6             30212274 206 + 175400573 attttgaattctacagtaaataatttcaatccctcccttgcctctcccttgcactgtcatactcacctggcaaaactacacagctggtgggttccacctctgtctatgctgcacctgcccca-tgagctgcaggaggctggacagcagcacacaacatgctgactggtctc------tttaagattccaaacctcatggggagcccctaccat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30442053 206 + 173848474 attttgaattctacagtaaataatttcaatccctcccttgcctctcccttgcattgtcatactcacctggcaaaactacacagctggtgggttccacctctgtctatgctgcacctgcccca-tgagctgcaggaggctgaagagcagcacacaacatgctgactggtctc------tttaagattccaaacctcatggggagcccctaccat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     157953 204 +   2037526 attttgaattctacagtaaataatttcaatccctcccttgcctctcccttgcattgtcatactcacctggcaaaactacacagctggtgggttccacctctgtctatgctgcacctg-ccca-tgagctgcaggagactggagagcagcacacaacatgctgactggtctc------tttaagattccaaacctcatggggagccccta-cat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74825733 212 + 122973662 atttttaactctacagtaaaaaatttcaagccctcccttgcctctcccttgcattgtcatactcacctggcaaaactacacaactggtggattccacctctgcctacactacacctgctcca-tgagcggcaggaggctggagagcagcacacagcacactgactggtctctttaaatttaagattccaaacctcatggggagcccctagcat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30472256 203 + 172585720 attttgaagtctgtagtaaataatttccatccctcctttggctctcccttgcat--tcacacttgtttggcaaaactacgcagctggtggattccacctctgcctacactgcacctgcccccatgagctgcaggag-------agcagcacacagcacaccgactgctctctgtaccttcacga-cccaaacctcatggggagcccccaccac
i rheMac8.chr4             I 22 C 0
s cerAty1.NW_012002535v1     132039 203 -    863181 attttgaagtctgtagtaaataatttccatccctcccttggctctcccttgcat--tcacacttgtttggcaaaactacgcagctggtggattccacctctgcctacactgcacctgcccccatgagctgcaggag-------agcagcacacagcacactgactgctctctgtaccttcacga-cccagacctcatggggagcccccaccac
i cerAty1.NW_012002535v1   C 0 I 42265
s chlSab2.chr17            29183330 204 -  71996105 gttttgaattctatggtaaataatttctatccctcccttgcctctcccttgagttgtcacactcacctggcaaaactacacagttggtggattctacctctgcctacactgcacctgctccc-tgagctgcaggag-------agcaacacacagcatactgactgctctctgtaccttcacga-cccagacctcatggggagcccccaccac
i chlSab2.chr17            I 2 C 0
s cebCap1.NW_016107755v1     576221 212 -   1771730 attgtgaattctatggtaaataatttcca-ccctcccttgcctctcccttgcattgtcacactcacctggcaaaactacacagctggtgagttccacctctgcctacgctgcacctgcccccatgagctgcaggaggctggagagcagcacacagcacgctgactggtctctttaaatttaagtttccaaacctcttggggagcccccaccac
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=3230.000000
s hg38.chr6_GL000254v2_alt  1341594 5 +   4827813 tgacg
s panTro5.chr6             30212480 5 + 175400573 tgaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30442259 5 + 173848474 tgaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     158157 5 +   2037526 tgatg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74825945 5 + 122973662 tgatg
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e cebCap1.NW_016107755v1     576433 0 -   1771730 C
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e chlSab2.chr17            29183534 0 -  71996105 C
e cerAty1.NW_012002535v1     132242 42265 -    863181 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I
e rheMac8.chr4             30472459 0 + 172585720 C

a score=1386960.000000
s hg38.chr6_GL000254v2_alt  1341599 528 +   4827813 tggccagcaa--------------------tcaccctctccctacgtggttcaccctcagcctcctcttggcctgggtgactcctagacaccttctctctgtgctcacacatccaacccttcttccccattcttacctcagctgacaaccttgcctcctacctcactgagaaaactgaacacattagaagacaacttccccgattccaccactgtctgctcatgcatttgcagctgcaccacatgtcaggcattttaccacggga-gggattgctgggggttaacaattctgctcccagtcagagccagtccctcttctggtgccccaaacatcatcccttctcatctacttaaagtt--gtcagt-----tcatcaactagtat-c--tttttttatctttatcatcaacttttt---ccctctctccccactggatcattgtggcagtcatgagaatgcacatcccagcccctcagctacaggaagcagaatcgatgatgaccccagctcttgaagcttg-aaatctattgccacatttgctctgatcccacacctgcccc
s panTro5.chr6             30212485 528 + 175400573 tggccggcaa--------------------tcaccctctccctacgtggttcaccctcagcctcctcttggcctgggtgactcctagacaccttctctctgtgctcacacatccaacccttcttccccattcttacctcagctgacaaccttgcctcctacctcactgagaaaactgaacacattagaagacaacttcccagagtccaccactgtctgctcatgcatttgcagctgcaccatatgtcaggcattttaccacgtga-gggattgctgggggttaacaattctgctcccagtcagagccagtccctcttctggtgccccaaacatcatcccttctcatctacttaaagtt--gtcagt-----tcatcaactagtat-c--tttttttatctttatcatcaacttttt---ccctctctccccactggatcattgtggcagtcatgagaatgcacatcccagcccctcagctacaggaagcagaatcgatgatgaccccagctcttgaagcttg-aaatctattgccacatttgctctgatcccacacctgcccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30442264 528 + 173848474 tggccagcaa--------------------tcaccctctccctacgtggttcaccctcagcctcctcttggcctgggtgactcctagacaccttctctctgtgctcacacatccaacccttcttccccattcttacctcagctgacaaccttgcctcctacctcactgagaaaactgaacacattagaagacaacttcccagagtccaccactgtctgctcatgcatttgcagctgcaccacatgtcaggcattttaccacgtga-gggactgctgggggttaacaattctgctcccagtcagagccagtccctcttctggtgccccaaacatcatcccttctcatctacttaaagtt--gtcagt-----tcctcaactagtat-c--tttttttatctttatcatcaacttttt---ccctctctccccactggatcattgtggcagtcatgagaatgcacatcccagcccctcagctacaggaagcagaatcgatgatgaccccagctcttgaagcttg-aaatctattgccacatttgctctgatcccacacctgcccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     158162 527 +   2037526 tgggcagcaa--------------------tcaccctct-cctgcgtggttcaccctcagcctcctcttggcctgggtgactcctagacaccttctctctgtgctcacacatccaacccttcttccccatttttacctcagctgacaacctttgcctcta-ctcactgagaaaactgaacacattagaagacaacttcccagattccaccactgtctgctgatgcatttgcagctgcaccacatgtcaggcattttaccacatgaggggattgctgggggttaacaattctgctcccagtcagagccagtccctcttctggtgccccaaacatcatcccttctcatctacttaaagtt--gtcagt-----tcatcaattagtat-c--tttttttatctttatcatcaacttttt---ccctctctccccactggatcattGT-gcagtcatgagaatgcacatcccagcccctcagctacagaaagcagaattgatgatgaccccagctcttgaagcttgaaaatctattgccacatttgctctgatcccacacctgcccc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74825950 524 + 122973662 tgggcagcaa--------------------tcaccctctccaggcatggttcagcctcagcctcctctt----caggagactcttacacagcttctctttgtgatcacacatccaaaccttattcctcattcttacttcagccgatgaccttgcttcctacttcactgagaaaactgaacacattagaagacaacttcacagattccaccaccatctgctcatgcatttgcaactgcactgcatgtcagacgttttaccacatga-gggactgttgtgggttaatcattctgctcccagccagagccagtccttcttctggtgccccaaatgtcaacccttatcatctagttaaaggt--gtcagt-----tcatcaattagtgtac--cttttttctttttatcatcaacctttt---tcctctctccccactggatcattgtggcagtcatgagaatgcacatcccagcccctcagctagaggaagcagaactgatgatggccccagctcttgaagcctg-aaatctattgccacatttgctctgagaccatacctg-ccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30472459 545 + 172585720 -ggccagcaatcaccctctccctgcatggctcaccctctccctgcatggctcaccctcagccccctctgggtctgggtgactcttacacaccttctctctgtgctcacacatccaaccctccttccccattcttacttcagctgatgaccttgcttcctacttcactgacaaaactgaacatattagaagacagcttcacagattccaccactgtctgttcatgcatttgcagctgcatcgcatgtcaggaatttttccacatgg-gagattgctgggtattaaccatcctgctcccagacagagccagttcctctgctggcgccctgaacatcatcccttctcatctacttaaaggt--gttagt-----tcatcaattaatac-c---ttttttccctctatcctcatcccttt---tcctcttactccagtgcatcattgtggcagtcatgaggatgcacatcccaggccctcaggtagacgaagaataattgatgat-gcctctgctgtcacagcctg-aaatctattgtcacttttgctccgagaccacacctgactc
i rheMac8.chr4             C 0 I 10
s cerAty1.NW_012002535v1     174507 530 -    863181 tggccagcaa--------------------tcagcctctcccttcatgactcaccctcagccccctccgggcctgggtgactcttacacaccttctctctgtgctcacacctccaaccctccttccctattcttacctcaactgattaccttggttcctacctcactgagaaaactgaacacattagaagacaacttcccagatcccaccactgtctgctcatgcatttgccgctgcatcacatgtcaggcgttttaccacgtgc-gggactcttatgggttaaccattctgctcccagccagagccagtgcctcttctggtgccccaaaagtcatcccttatcatctacttaaaggt--gtcagt-----tcatcaactaatac-ctttttttttctctttatcatcaccctttt---ccctctctccccactggatcattgtggcagtcatgagaatgcacatcccagcccctcagctagagaaagcagaattgatgatggccccaacttttgaatcctg-aaacctattgccacatttgctctgagaccacacctgcccc
i cerAty1.NW_012002535v1   I 42265 C 0
s chlSab2.chr17            29183534 529 -  71996105 -ggccagcaa--------------------tcaccctctccctgcatggcttaccctcagcctcctccgggcctgggtgacttgtacacaccttctctgtgtgctcacatatccaattctccttccccattcttacatcggctgatgaccttggttcctacctcactgagaaaactgaacacattagaagacagcttcccagattccaccactgtctgctcatgcatttgcggctgcatcacatgccaggcattttaccacgtgg-gggactgttgtgggttaaccatcctgctcccagaaagagccagtccctcttctggtgccccaaaagtcatcccttctcatccacttaaaggt--gtcagt-----tcatccattaatac-ctttttttttctctttatcatcaacctttt---tcctctctccccactggatcaCtgtggcagtcatgagaatgcacatcccagcccctcagctagaggaagcagaattggcgatggccccaacttttgaatcctg-aaacctattgccacatttgctctgagaccacacctgcccc
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1     576433 534 -   1771730 -ggccaacaa--------------------tcaccctctccctgcatgtctcaccctcagcctcct---gtcctgggtgactcttacacaccttctctttgtgctcactcatccaacctttcctctccgttcttaactcagctgatgacattgcttcttactacactaagaaaactgaacccaggagaaaacaatttcacagattccaccactgcctgctcatgcatttgcagctgtactgcatgtcaggcattttattatgtgg-gggactgttgtgggtgagccattctgtcctcagccagagccagtccctcttctggtgacccaaatgtcatcccttctcatctacttttaagtagatgagtattaatcatcaattaatac-c-atttttttctctttctcatcacccttccgcacccccccgccccactgaatcatCgtggcagtcatgagaatgcacttcccagcccctcagctagaggaagcataactggtgatggcc-cagctcttgaagcctg-aaatctattgccacatttgctctgagaccacacctgcccc
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=38183.000000
s hg38.chr6_GL000254v2_alt  1342127 18 +   4827813 ctgatcttttccagccaa
s panTro5.chr6             30213013 18 + 175400573 ctgatcttttccagccaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30442792 18 + 173848474 ctgatcttttccagccaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     158689 18 +   2037526 ctgatcttttccagccaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74826474 18 + 122973662 ctgatcttttccagccaa
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     175037 17 -    863181 ctg-tcttttccagccaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29184063 17 -  71996105 ctg-tcttttccagtcaa
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1     576967 17 -   1771730 -tggtcttttccaaccaa
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I
e rheMac8.chr4             30473004 10 + 172585720 I

a score=1005082.000000
s hg38.chr6_GL000254v2_alt  1342145 368 +   4827813 tgattgaggaaagcagggcagaaactaaggcaggaatatttctcctctgaaggctgactgcagccccagggctccctgcctcctttactaaatttcccttagcctgcacagggtctaggatgcttccagctgaacttcctgccctctctccttcactggggctc-agagttgcagtgtggtctgatggctctcccagtgttttctgtctctctcctgaatttctctcacaagta-tttccctgaataaatccttgcacatttactaccgtattgggctctgctcctcaggggaccctaactaacccaAGCGGTATGAAGGGTGACCCATG-AAAACAGGCAAAAATGGGAATTTGAAATAATCTTGCCCAC
s panTro5.chr6             30213031 368 + 175400573 tgattgaggaaagcagggcagaaactaaggcaggaatatttctcctctgaaggctgactgcagccccagggctccctgcctcctttactaaatttcccttagcctgcacagggtctaggatgcttccagctgaacttcctgccctctctccttcactggggctc-agagttgcagtgtggtctgatggctctcccagtgttttctgtctctctcctgaatttctctcacaagta-tttccctgaataaatccttgcacatttactactgtattggggtctgctcctcaggggaccctaactaacccaAGCGGTATGAAGGGTGACCCATG-AAAACAGGCAAAAATGGGAATTTGAAATAATCTTGCCCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30442810 368 + 173848474 tgattgaggaaagcagggcagaaactaaggcaggaatatttctcctctgaaggctgactgcagccccagggctccctgcctcctttactaaatttcccttagcctgcacagggtctaggatgcttccagctgaacttcctgccctctctccttcactggggctc-agagttgcagtgtggtctgatggctctcccagtgttttctgtctctctcctgaatttctctcacaagta-tttccctgaataaatccttgcacatttactactgtattggggtctgctcctcaggggaccctaactaacccaAGCGGTATGAAGGGTGACCCATG-AAAACAGGCAAAAATGGTAATTTGAAATAATCTTGCCCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     158707 368 +   2037526 tgattgaggaaagcagggcagaaactaaggcaggaatatttctgctctgaaggctgactgcagccccagggct-cctgcctcctttactaaatttcccttagcctgcacagggtctaggatgcttccagctgaccttcctgccctctctccttcactggggctc-agagttgcagtgtggtctgatggctctcccagtgttttctgtctctcttctgaatttctctcacaagta-tttccctgaataaatccttgcacatttactactgtattggggtctgctcctcaggggaccctaactaacccaAGCGGTATGAAGGGTGACCCATGAAAAACAGGCAAAAATGGGAATTTGAAATAATCTTGCCCAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74826492 367 + 122973662 tg-ttgaggaaagcagggcagaaactaaggcaggaacatttcttctctgaaggctgactgaagtgccaggactccctgtctcccttactgaacttcccttagcctgcacagggtctaagatgcttccagctgaccttcctgcactctctccttcactagggctc-agagttgcagtgtggtctgatggctttcccagtgttttctgtctctctcctgaatttctctcacaagta-tttcccctaataaatccttgcacgcttaatactgtattggggtctgctcctcaggggaccataactaacacaAGTGGTATGAAGGGTGACCCATG-AAAACAGGCAAAAATGGGAATTTGAAATAATCTTGCCCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30473014 357 + 172585720 tggttgaggaaagcagg---gaaactgaggcaggaatatttctattctgaaggctgactgaggctccagggctccctgctacttttaccgaacttaccttagcccgcacagggtctagaaggcttccagctgaccttcctgccctctctccttcactggggctc-agagttgcagtgtggtctgatggctttcccagtgttttcggtctctctcctgaatttctctcacaagta-tttcctttaataagtccttgcacgtttaatactgtattggagtctgctcctcaggagaccataactaacac-aGTGGTATCAAGGGTGAT--------AATGGgcaaaaataggaaattgaaataagctttcccac
i rheMac8.chr4             I 10 C 0
s cerAty1.NW_012002535v1     175054 368 -    863181 tgactgaggaaggcagggtagaaactaaagcagg-acatttctcttctgaaagctgactgaggctccagggctccctgccacccttacagaacttcccttagcctgcacagggtctagggtgcttccagctgaccttcctgaactctctacatcactggggctcaagagttgctttgtggtctgatggctttcccagcattttctgtttgtgtcctgaatttctctcacaagta-tttcctctaataaatccttgcacgtttaatactgtattggggtctgctcctcagaggaccctaactaatacaAGTAGTATGAAGGGTGATCCATG-GAAACAGGCAAAAATGAGAATTTGAAGTAAGCTTGCTCAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29184080 364 -  71996105 tgattgaggaaagcaggccagaaactaaggcagaaacatttcttctctgaaggctgcccgaagctccagagctccctgccaccctcactgaacttcccttagcctgcacggggtctaggatgcttccaactgatcttcctgaactctctacgtcactggggctc-agagttgctttgtggtctgatggctttcccaacattttc----tctctcatgaatttctctcacaagta-tttgccctaataaaaccttacacgtttaccactgtattggggtctgctcctcaggggaccctaactaacacaAGTGGCATGAAGGGTGATCCATG-AAAACAGGCAAAAATGAAAATCTGAAATAAGCTTTCCCAC
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1     576984 358 -   1771730 tgattgaggaaagcagggcagaaactaaggcaggaacatttttcctctgaaggctgactgaagctccagggctccctgccacccttactgaacttcccttagccagcacagggtctagggtgcttccagctgaccttcctgccctctctctttcactggggctc-agagtggtattgtgg-----------tccctgcattttctgtctctttcctgaatttctctcacatgtattttcccctagtaaatccttgggcgtttaatactatattggggtctgcttctcaggggaccccaactaacacaAGtggtatgaagggtgatccatg-aaaacaggcagaaatgggaattaaaaataagcttgcccac
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     125046 89783 -    383796 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=533917.000000
s hg38.chr6_GL000254v2_alt  1342513 169 +   4827813 TGCCTGGCAGGCCAAGAGGATGCCACCCGGGTTGGT-GGGGGACACAGAAAGTCCATGGCATAAGGTGCAGCTGAGGTGCTGT-GGTCTCCTCAGTGCTGAGCTGAGAAGATGCCCTGGTTAGGGGAAGCTATGGCAGGTGAGGTGATAGAATGCCCTACACAATAATGAT
s panTro5.chr6             30213399 169 + 175400573 TGCCTGGCAGGCCAAGAGGATGCCACCCGGGTTGGT-GGGGGACACAGAAAGTCCATGGCATAAGGTGCAGCTGAGGTGCTGT-GGTCTCCTCAGTGCTGAGCTGAGAAGATGCCCTGGTTAGGGGAAGCTATGGCAGGTGAGGTGATAGAATGCCCTACACAATAATGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30443178 147 + 173848474 TGCCTGGCAGGCCAAGAGGATGCCACCCGGGTTGGT-GGGGGACACAGAAAGTCCATGGCATAAGGTGCAGCTGAGGTGCTGT-GGTCTCCTCAGTGCTGAGCTGAGAAGATGCCCTGGTTA--------------AGGTGAGGTGATG--------TGTACACTAATGAT
i panPan2.chr6             C 0 I 428
s gorGor5.CYUI01015528v1     159075 169 +   2037526 TGCCTGGCAGGCCAAGAGGATGCCACCCGGGTTGGT-GGGGGACACAGAAAGTCCATGGCATAAGTTGCAGCTGAGGTGCTGT-GGTCTCCTCAGTGCTGAGCTGAGAAGATGCCCTGGTTAGGGGAAGCTATGGCAGGTGAGGTGATAGAATGCCCTACAGAATAATGGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74826859 170 + 122973662 TGCCTGGCAGGCCAAGCGGATGCCACCCGGGTTGGT-GGGGGACACAGAAAGTCCATGGAacaaggtgcagctgagctgctgtgggtctcaccagtgctgagatgagaagatgccctgcttaggggatgctatggcaggtgcagtgatagaatgccctccacaataatgac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30473371 167 + 172585720 tgcctggtagaccaagaggatgccatctgggttagtcgggggacacag----tctgtagcacaaggtgcagctgaggtgctgtgggtctcaccagtgctaacctgagaagacgtcctgattaaaagcagctatggcaggtgggatgatacaataccctgcacaataatgat
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     175422 166 -    863181 TGCCTGGCAGGCCAAGTGGATGCCACCTGGGTTGGT-GGGGGACACAGAAATTCCATAGCACAAGATACAGCTGAGCTGTCTTGGGtctcaccagtgctgagctgagaagatgccctggttaggggatggtatggcaggtgcagtgata----gccctacacaataatgat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29184444 170 -  71996105 TGCCTGGCAAGCCAAGAGGATGCCACCCGGGTTGGT-GGGggacacagaaactccatggcacaaggtgcagctgagctgctgtgggtctcaccagtgctgagctgagaagatgccttcgttacagggtgctatggcaggtgtggtgatagaatgccctgtacaataaggat
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1     577342 170 -   1771730 tgcctggtaggccaagagggtgcctcccaggttggt-gggggacacggaacatccacggcacaaggtgcagctgagctgcagtgggtctccccagtgctgagctgagaagatgccctggttaggggaagctacggcaggtgcagtgatagatttcccttcacaataatgaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     214829 170 -    383796 TGCCTGCCAGGCCAAGAGGATGCCACCTGGGTTGGT-TAGGGACACAGAAAGTCCACAGCACAAGGTGCAGCTGAGCTGCTGTGGGTCTCCCCAGTGCTGAGCTGAGAAGATGCACTGGTTAGGGGCATCCATGGCAAGTGCGGTGATAGAATTCCCTGCACAGTAATGAT
i aotNan1.NW_018496904v1   I 89783 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=1940442.000000
s hg38.chr6_GL000254v2_alt  1342682 579 +   4827813 GAGGTTgg-g-gg-aaacctacaaagacagaggagttgggtggttactgcttggctgcgttgataccctataaaaggatcatgagaatctgcgggttgttaacagctgtcactggctacaggtgacagccTCTGCAGTGTCTCATGGagaggcctttatctcctgtagcgaaagggcagatagcgtggaatggcagctgaagacatcattacgagggccacagtgctccagacatgtctgacactcagccaaagcaggcctgttacaggaaagtcagggtcctggtggggaaacctgagattctggaaactggaaccaggatatccgatgggtgccctccaggaccctctgggaatgcagaggaggctcaccattatctaataatggttcccacttcCTACGCTGGAAGATGCTGCAAAAGCCTCACCCCCGTGATTCTGCGGGAATCCTACTCAGCAGCTTtgcaggaattagccgccatttccccacaggagcccaaggagcacttctgggattggaatttgagggcgtttgatcaagaaaccagaatttcaggctggatgaataaaaatcctttggctt
s panTro5.chr6             30213568 579 + 175400573 GAGGTTgg-g-gg-aaacctacaaagacagaggagttgggtggttactgcttggctgcgttgatgccctataaaaggatcatgagaatctgcgggttgttaacagctgtcactggctacaggtgacagcctctgcagtgtctcatggagaggtctttatctcttgtagcgaaagggcagatagcgtggaatggcagctgaagacatcattatgagggccacagtgctccagacatgtctgacactcagtcaaagcaggcctgttacaggaaagtcagggtcctggtggggaaacctgagattctggaaactggaaccgggttatccgatgggtgccctccaggaccctctgggaatgcagaggaggctcaccattatctaataatggttcccacttcCTACGCTGGAAGATGCTGCAAAAGCCTCACCCTCGTGATTCTGCGGGAATCCCACTCAGCAGCTTtgcaggaattagccgccatttccccacaggagcccaaggagcactcctgggattggaatttgagggcgtttgatcaagaaaccagaatttcaggctggatgaatacaaatcctttggctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30443753 579 + 173848474 GAGGTTgg-g-gg-aaacctacaaagacagaggagttgggtggttactgcttggctgcgttgatgccctataaaaggatcatgagaatctgcgggttgttaacagctgtcactggctacaggtgacagcctctgcagtgtctcatggagaggtctttatctcttgtagcgaaagggcagatagcgtggaatggcagctgaagacatcattatgagggccacagtgctccagacatgtctgacactcagtcaaagcaggcctgttacaggaaagtcagggtcctggtggggaaacctgagattctggaaactggaaccgggttatccgatgggtgccctccaggaccctctgggaatgcagaggaggctcaccattatctaataatggttcccacttcCTACGCTGGAAGATGCTGCAAAAGCCTCACCCTCGTGATTCTGCGGGAATCCCACTCAGCAGCTTtgcaggaattagccgccatttccccacaggagcccaaggagcactcctgggattggaatttgagggcgtttgatcaagaaaccagaatttcaggctggatgaatacaaatcctttggctt
i panPan2.chr6             I 428 C 0
s gorGor5.CYUI01015528v1     159244 579 +   2037526 GAGGTTgg-g-gg-aaacctacaaagacagaggagttgggtggttactgcttggctgcgttgatgccctataaaaggatcatgagaatctgtgggttgttaacagctgtcactggctacaggtgacagcctctgcagtgtctcatggagaggcctttatctcctgtagtgaaagggcagatagcgtggaatggcagctgaagacatcattacgagggccgcagtgctccagacatgtctgacactcagccaaagcaggcctgttacaggaaagtcagggtcctggtggggaaacctgagattctggaaactggaaccaggttatccgatgggtgccctccaggaccctctgggaatgcagaggaggctcaccattatctaataatggttcccacttcctgcgcTAGAAGATGCTGCAAAAGCCTCACCCCCGTGATTCTGCGGGAATCCCACTCAGCAGCTTtgcaagaattagccgccatttccccacaggagcccaaggagcacttctgggattggaatttgagggcgtttgatcaagaaaccagaatttcaggctggatgaataaaaatcctttggctt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74827029 580 + 122973662 gggattggag-gg-aaacttacaaagacagtggagttggctggttactgctcggctgtgttgatgccctataaaacgatcatgagaatctgcggattgttaacagttgtcactggctatatgtgacagcctctgcattgtctcatggagaggactttatctccagcagcgaaagggcagatagcatggaatggtagctgaagacatcactacgagggccacagtgctccagagatgtctgacactcagccaaagcaggcctgttacgggaacgtcagggtcctggtggggaaacctgagattctggaaactggaacagggttatccgatgggtgcccTCCAGGACCCTCTGGGAATGCAGAGGAGGCTCGCCATTTCCTAGTAATGGTTCCTACTTCCTATGCTGGAATATGCTGCAAAAGCCTCACCCCTATGATTCTGCGGGAATCCCACTCaggaggttagcaggaattagctgccatttccccataggagcccgaggagcacttctgggattgcaatttgagggtgtttgatcaagaaaccagtattttaggctggatgaataaaaaccctttggctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30473538 577 + 172585720 ggaattgg-g-gg-gaacccacaaagacagtgga-ttggctggttacttcccagctgtgttcatgctctataaaatgataatgagaatctgtagattgttcacagatgtcactggctacgtgtcagagcctctgcagtgtctcatggagaagcctttatctcctgtagcaaaaggatagataccacggaatagtagctgaagacatcattatgagggccacagtgctccagagatgtttgacacccagccaatgcaggcccgttataagaaagtcagggccatggtggggaaacctgagattctgcaaactggaacaagatcatccgatgggtgccGCCC-GGATCCTCTGGGCATGCAGAGGAGGCTCACCCGTCTCTAGCAATGGTTCCCACTTCCTATGCTGGAAGATGCTGCAGAAGCCTCATCCCTATGACACATTGGGAATCCCACTCaggagctttgcaggaaccagctggcgggtcccaataggagcacggggagcacttctgggactgaaatttgagggtgtgtgatgaaggggtcagaatgtcaggctggattaatgtaaatccattggctt
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     175588 580 -    863181 ggagttgg-g-ggaaaacctacacagacagtggagttgactggttactgctcggctgcgttgatgccctataaaaggatcatgagaatctgcggattattaatagcggtcactggctacaggtgacagcctctgcagtgtctcatggagaggtctttatctcctgtagtgaaagggcacatactgtggaatggcaactgaagacatcattatgagggccacagtgctccagagatgtttgacactcagcaaaggcaggcctgttacatgaaaatcagggctctggtgggtaaacctgagaTTCTGCAAACTGGAACAGGGTTATCCAATGAGTGCCCTCCAGGATCCTCTGAGCATGCAGAGGAGGTTCGTCCTTCTCTAGTAATGGTTCCCAGTTCCTATGCTGGAAGATGCTACAGAAGCCTCACCCCTATGATGCAGCAGGAATCCCATTCaggagctttgcaggaaccagccagcatgtccccataggagcccaaggagcatttctgggattggaatttgagggcatttgttcaaggaaccagaatttcaggctggaagaacaaaaatcctttggctt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29184614 578 -  71996105 ggggttgg-g-gg-aaacctacaaagacaggggagttggctggttactgctcggctgcattgttgccctatgaaaggatcatgagaatctgtggaatgttaacagctgtcactggctacatgtgacagcctctgcagtatctcatggagaggtctttatctcctgtaacaaaagggcagatagcatggaatggtagctgaagacatcattatgagggctacagtgctccagagatgtttgacactcagccaaggcaggcctgttacaggaaagtcagggccc-ggtggggaaacctgagattctgcaaactggaataggattatgcgatgggtgctgtctaggatctttggggcatgcagaggaagctcacccttttctagtaatggttcccacttcttatgctggaagatgctacagaagcctcatccctatgatgccatgggaatcccACTTaggagctttgcaggaactagctagctcgtccccatagggggctggggaccacttctgggattggaatttgagggcctttgattaaggaaccagaatttcagtctggatgaataaaaatcatttggctt
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1     577512 575 -   1771730 ggggttgg-g-ga-aaaccttcaaagacagtggagatggctggttat-gctcggctgtgctgatgccctataaaaggatcatgagaacctgtggattcttaacagccatcatgggctacatgtgacagcctctgcagcatctcatggagaggcctttatctcctgtagtgaaagggcagacagcatggaattatagttgaagacatc-ttttgagggtcccaatgctccagagatgtttgacactcagccaagtcaggcctgttacaggaaagtcaggaccctggtggggaaacctgagattccacaaactggaacagggttatccgatgggtgccctccaggatCCTCTGGGCATGCAGAGGAGGCCAGCGCTTCTCTAGTAATGGTTCCCAC-TCCTGTGCTGGAAGATGCTTCAGAAGCCTCACCCCTAGGATGCAGCGGGAATCCCACTCaggagctttgcaggaactc-ccagcacttccctgtaggagcccgaggagcacttctgggattggaatttgagggtatttgattaaggaaccataatttcaggctagatgaacaagaatcctttggatt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     214999 573 -    383796 GGGGTTgg-gagg-aaacctacaaagtcagtggagttggctggttatggctcggctgccctgatgccctatgaaaggattgtgagaatc--tggattgttaacagccatcactggctacatgtgacaatctctgcactgtctcatggagaggtctttatcttctgtagagaa-----agatagtgtgaaattatagttgaaaacatcattacaagggccacagtgcttcagagatgtttgacactcagccaaggcaggcctgttacaggaaagtcagggccctggtggggaaacctgagaTTCTGCAAACTGGAACAGGGTTATCCAATGGGTGTCCTCCAGGACCCTCTGGGCATGCAGAGGAAGCCCACCCTTCTCTAATAATGGTTCCCACTTCCTATGTTGGAAGATGCTGCAGAAGCCTCACACCTATGATGCAGCGGGAATCCTACTCaggagctttgcaggaacgagccggcatgaccccataggagcccaaggaacacttcagagattggagtttgaggacacttgatcaaggaaccagaatTTCTGCCTGGATGAATAAAAATCCTCTGGCTT
i aotNan1.NW_018496904v1   C 0 I 9134
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=802496.000000
s hg38.chr6_GL000254v2_alt  1343261 288 +   4827813 ggaggcactttctcaaggcatgggtttgtcaaacaccccaggactttgataagtggagctaaacccaccgctggggtgaatccatatagattggaaaaaaagatgcccaactctcaacaaggtagacatgtcttagttgccctggaacatgtaaaggaaggaataacgaggctgagggaagtgggcatggtgaaggcccaccagggccatgctccacaagagggcccagaggacacaaccttccaccagagcctcaggaacatgatggtgaaagggacctgcatcact
s panTro5.chr6             30214147 288 + 175400573 ggaggcactttctcaaggcatgggtttgtcaaacaccccaggactttgataagtggagctaaacccaccgctggggtgaatccatatagattggaaaagaagatgcccaactctcaacaaggtagacatgtcttagttgccctggaacatgtaaaggaaggaataacgaggctgagggaagtgggcatggtgaaggcccaccagggccatgctccacaagagggcccagaggacacaaccttccaccagagcctcaggaacatgatggtgaaagggacctgcatcact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30444332 288 + 173848474 ggaggcactttctcaaggcatggttttgtcaaacaccccaggactttgataagtggagctaaacccactgctggggtgaatccatatagattggaaaagaagatgcccaactctcaacaaggtagacatgtcttagttgccctggaacatgtaaaggaaggaataacgaggctgagggaagtgggcatggtgaaggcccaccagggccatgctccacaagagggcccagaggacacaaccttccaccagagcctcaggaacatgatggtgaaagggacctgcatcact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     159823 287 +   2037526 ggaggcactttctcaaggcatgggtttgtcaaacaccccaggactttgataagtggagctaaacccaccgctggggtgaatccatatagattggaagaaaagatgcccaactctcaacaaggtagacatctcttagttgccctggaacatgtaaaggaaggaataacgaggctgagggaagtgggcatggtgaagg-ccaccagggccatgctccacaagagggcccagaggaaacaaccttccaccagagcctcagggacatgatggtgaaagggacctgcatcact
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74827609 287 + 122973662 ggaggcactttctcaaggcatgggtttatcaaatatcccaggactttgataagtgggggtaaacccactgctggggtgaatccatatagactagaaaaaatgatgcccaactctcaacaaggtagacatgtcttagtttccctggaacatgtagaggatggaataaggaggctgagggaagtgggcgtgGTGAAGGCCCACCAGGACCATGCTCCACAAGAGGGCCCAGAAGGCAC-ACCTTCCACCAGAGCCTCAGGAACTTGATGGTGAGAGGGACCTGCATCACT
i nomLeu3.chr1a            C 0 N 0
s rheMac8.chr4             30474115 278 + 172585720 ggaggcactatctcagggcatgggtttatcagacaccccagaactttgataagtgggggtaaacccactgctggggtgaat---------ctagataaactgattcccagatctcaacaaggtagacatgtcttagttgccctagaacatgcagaggatggaataacgaggctgagtgaattgggcatggtgaaggcccactaagaccatgctccacaagaggatccagacgccac-accttccaccagagcctcaggaacgtgatggcgagagggagctgcatcact
i rheMac8.chr4             C 0 I 3
s cerAty1.NW_012002535v1     176168 287 -    863181 ggaggcactttctcaaggcatgggtttatcaaacacctcaggactttgataagtgggggtaaacccactgatggggtgaatccctatagactagaaaaaatgatgcccaactctcaacaaggtagacgtgtcttagttgccctggaacttgcacaggatggaataacaaggctaagggaaatggacgtggtgaaggcccaccagtaccatgctccacaagagggcccaaaggaaat-accttcccccacagcctcaggaaggtgatggtgagagggacctgcatcact
i cerAty1.NW_012002535v1   C 0 I 3
s chlSab2.chr17            29185192 287 -  71996105 ggaggcactttctcagggcacgggtttatcaaacaccccaggactttgacaaatggaggttattccactgctggggtgaatccatataaactggaaaaaaagatgcccaactctcaacaaggtagacatgtcttagttgctctggaacatgtagatgatggaataacgaggctgaggaaagtgggcatggggaaggcccaccaggactatgctctacaagagggcccagaggacac-actttccaccagagcctcaggaacatgatggtgagagggacctgcatcatt
i chlSab2.chr17            C 0 I 3
s cebCap1.NW_016107755v1     578087 286 -   1771730 ggaggtgctttcacagggtgtgggtttattcagcaccccaggactttgataagtgggggtaaatccaatgtcgaggtgaatccatacagactagaaaaaatgatgcccagctctcaacaaggtagacctgccttagttgccctggaacatgtagaggatggaataacgaggctg-gggaagtgggcgtggtgtagatgccccaggaccatgctccacaagagggcccagagggcac-accttttgccagagcctcaggaacgtgctggtgagagggacctgcatcact
i cebCap1.NW_016107755v1   C 0 I 3
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     215572 9134 -    383796 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=2335204.000000
s hg38.chr6_GL000254v2_alt  1343549 1093 +   4827813 aagtataggggtgttgtcctctgcaggctgcaggtgatggtaataaagatggtcccagagttgcatttatccatatccctggggagagtgtggccctgaagagacagagaagaagtggtggcagtgacctgaaaaag-cagagggcatggttactatggcaacttcagagtagcagccaggaggactcaagttgcagggaatgtggggaaggttaatagagggtggtgtcccagggttaggacaggcagcc-aacaagggcgctgcttgatatctatgataggaatgaaagaattgaggagcaggagggtgaaggtgtttgacccaatacaaagtcatgatcccatcctcaatgcctagacctcagccaagattcagattcagatctcagtgacaga---ggaggagtccatatccctaggaggaagaccctgcaaccctgtggaagtatatgctggcacaattccctcaat-catttggcaaaggaacctatagacatttacttgggtggttgtacactgggg-aaaggaaacacgcagaactggaggg-attattgacactgggtgtgagctgacattgatgcccagatgcccacagcac--tcatgtctcccatcacagtggggcttatggaggccagggagtaaacctggacaaattatggcccacaatgggaccactgggccaacagacccaacgctggatatctttcaattccctgagtgcatgatt-gacactgctgcactgctaagtggagtcacccccacactgggtccctagtctgtggagtaaggactctcattgtgctgaaagccaaacggaaacctctgacactgcccacatcctggccaaatcaaaaaccatagtgtgtcccagggtggg---tcttgtggaagacactgaaagtatt---atggggtcgcaccaacattagagagctgaaggatgtggggtggtgttggggctgtctattgtctctatgtaatccagcaacctgtccctgagggaaactggtaaggcctaaagaatgaatgagattactccaggtctggccaagtaggagttataattgcagcttttatgttgtctggttatcactggtagagca
s panTro5.chr6             30214435 1093 + 175400573 aagtataggggtgttgtcctctgcaggctgcgggtgatggtaataaagatggtcccagagttgcatttatccatatccctggggagagtgtggccctgaagagacagagaagaagtggtggcagtgacctgaaaaag-cagagggcatggttactatggcaacttcagagtagcagccaggagaactcaagttgcagggaatgtggggaaggttaatagagggtggtgtcccagggttaggacaggcagcc-aacaagggcgctgcttgatatctatgataggaatgaaagaattgaggagcaggagggtgaaggtgtttgacccaatacaaagtcatgatcccatcctcaatgcctagacctcagccaagattcagattcagatctcagtgacaga---gaaggagtccatatccctaggaggaagaccctgcaaccctgtggaagtatatgctggcacaattccctcaat-catttggcaaaggaacctatagacatttacttgggtggttgtacactgggg-aaaggaaacacgcagaactggaggg-attattgacactgggtgtgagctgacattgatgcccagatgcccacagcac--tcatgtctcccatcacagtggggcttatggaggccagggagtaaacctggacaaattatggcccacaatgggaccactgggccaacagacccaacgctggatatctttcaattccctgagtgcataatt-gacactgctgcactgctaagtggagtcacccccacactgggtccctagtctgtggagtaaggactctcattgtgctgaaagccaaagggaaacctctgacactgcccacatcctggccaaatcaaaaatcatagtgtgtcccagggtggg---tcttgtggaagacactgaaagtatt---atggggtcgcaccaacattagagagctgaaggatgtggggtggtgttggggctgtctattgtctctatgtaatccagcaacctgtccctgagggaaagtggtaaggcctaaagaatgaatgagattactccaggtctggccaagtaggagttataattgcagcttttatgttgtctggttatcactggtagagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30444620 1093 + 173848474 aagtataggggtgttgtcctctgcaggctgcgggtgatggtaataaagatggtcccagagttgcatttatccatatccctggggagagtgtggccctgaagagacagagaagaagtggtggcagtgacctgaaaaag-cagagggcatggttactatggcaacttcagagtagcagccaggagaactcaagttgcagggaatgtggggaaggttaatagagggtggtgtcccagggttaggacaggcagcc-aacaagggcgctgcttgatatctatgataggaatgaaagaattgaggagcaggagggtgaaggtgtttgacccaatacaaagtcatgatcccatcctcaatgcctagacctcagccaagattcagattcagatctcagtgacaga---gaaggagtccatatccctaggaggaagaccctgcaaccctgtggaagtatatgctggcacaattccctcaat-catttggcaaaggaacctatagacatttacttgggtggttgtacactgggg-aaaggaaacacgcagaactggaggg-attattgacactgggtgtgagctgacattgatgcccagatgcccacagcac--tcatgtctcccatcacagtggggcttatggaggccagggagtaaacctggacaaattatggcccacaatgggaccactgggccaacagacccaacgctggatatctttcaattccctgagtgcataatt-gacactgctgcactgctaagtggagtcacccccacactgggtccctagtctgtggagtaaggactctcattgtgctgaaagccaaagggaaacctctgacactgcccacatcctggccaaatcaaaaatcatagtgtgtcccagggtggg---tcttgtggaagacactgaaagtatt---atggggtcgcaccaacattagagagctgaaggatgtggggtggtgttggggctgtctattgtctctatgtaatccagcaacctgtccctgagggaaactggtaaggcctaaagaatgaatgagattactccaggtctggccaagtaggagttataattgcagcttttatgttgtctggttatcactggtagagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     160110 1091 +   2037526 aagtataggggtgttgtcctctgcaggctgggggtgatggtaataaagatggtcccagagttgcatttatccatattcctggggagagtgtggccctgaagagacag---agaagtggtggcagtgacctgaaaaag-cagagggcatggttactatggcaacttcagagtagcagccaggagaactcaagttgcagggaatgtggggaaggttaatagagggtggtatccca-ggttaggacaggcagccaaacaagggcgctgcttgatatctatgataggaatgaaagaattgaggagcaggagggtgaaggtgtttgacccaatgcaaagtcatgatcccatccttaatgcctagacctcagccaagattcagattcagatctcagtgacaga---ggaggagtccatatccctaggaggaagaccctgcaaccccgtggaagtatatgctggcacaattccctcagt-cattcggcaaaggaacctatagacatttacttgggtggttgtacactgggg-aaaggaaacacgcagaactggaggg-attattgacactgggtgtgagctgacattgatgcccagatgcccacagcac--tcatgtctcccatcacagtggggcttatggaggccagggagtaaacctggacaaattatggcccacaatgggaccactcggccaacagacccaacgctggatatctttcaattccctgagtgcataattggacactgctgcactgctaagtggagtcacccccacactgggtccctagtctgtggagtaaggactctcattgtgctgaaagccaaagggaaaactctgacactgcccacatcctggccaaatcaaaaatcatagtgtgtcccagggtggg---tcttgtggaagacactgaaagtatt---atggggtcacaccaacattagagagctgaaggatgtggggtggtgttggggctgtctattgtctctatgtaatccagcaacctgtccctgagggaaactggtaaggcctaaaaaatgaatgagattactccaggtctggccaagtaggagttataattgcagcttttatgttgtctggttatcactggtagagca
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30474396 1094 + 172585720 aagtgttggggtgttgtcctctgcagactgggggtgatggtagtaaagacagtcccagagttgcatttattaatatccctggggagggtgtggccctgaagagacaaagaccaagtggtggcagtgatctgcaaaagccagacagcaccattactatgtcagcctcagaggggcagccaagaggactcaagctgcagggaatgtggggaaggttaatagagtttggtgtcccagggttaggacaggcaact-aacaagggcactggttgatatttatgataataaagcaagaattgagaagcaggagggtaaaggtttttgaaccaatac--agtcatgatcccatcctcaatgcctagacctcagccaagattcagattcagatcccggtgacaga---cgtggagtccatatccctaagaggaataccctgtaacctcgtgaaagtatatgccgggacaatcccctcagtcccttcggcaaaggaacctatagtcatttactcaggagactgtaccctggggaaaaggaaacaggcagaactgggggg-attactgacactggctgtgag-ggacactgatgcccagatgcccacagcaccatcatgtctcctatcacagtggggcttacggaggtcaaggagtaaacctggacacattatggcccacaatgggaccactggattcacagacccagccctggttatcttccaattccctgagtgcataatt-gacactgatgcacttctaagtggagtcacccccacactgggtccctagtctgtggagtgacggctctcattgtgctgaaagacaaagggaaacctctgacactgcccccatcctggccaaatcagaaatcatagtgtgtcccaggttggg---tcttgtgaaagacgctgaaagaactggaggggggttgcaccaacgttagagagctgaaggatgcagggtggtgttggg----gctattgtctctacgtaatccagtaacctgtacctgaggaagcctgacgaggcctaaagaatgaactagattactccaggtatgaccaagtaggagttatcattgcagcttttatgttgtctggatatcactggtagagca
i rheMac8.chr4             I 3 N 0
s cerAty1.NW_012002535v1     176458 1091 -    863181 acgtgttagggtgttgtcctctgcaggctgggggtgatgatactaaagaaggtcccagagctgcatttattcatatccctggggaaagtgtggccctgaagagacaaagaccaagtggtggcagtgacctgacaaagccagagggcacggttactatggcaacgtcaaaagagcagccaagatgcctcaagctgcagggaatgtggggaaggttaatagagggtggtgtcctagggttaggacaggcagcc-agcagggttgctacttgatgtctatgataagaaagcaagaattgagaagcaggagagcaaaggtgtttgacccaatacaaagtcatgatctcatcctcaatgcctacacctcaaccaaggttcagattcagatctcagtgacaga------ggagtccatatccctaagaggaagacactgcaaccccgtggaagtatatgctggcataattccctcagt-ccttcggcaaaggaacctatagacatttacccaggaaactgtacattgggg-aaaggaaacaggcagaactggggggaattattgacactgggtgtgagctgacattgctgaccagatgcccacagcaccatcatgtctcccatcacagtggtgcttacggaagtcagggagtaaacctggacacattatgggccacaatgggaatgctggattcatagacccagccctggttatcttccaattccctgagtgcataatt-gacactgatgcactgctaagtggagccacccccacactgggtcgctagtctgtggtgtaaggactctcattgtgctgaaagccaaagggaaacttctgacattg-ccccatcctggccaaatcagaaatcatagtgtgtaccagagtggg---ttgtgaggaagacactgaaagtatt---tgggggttgcaccaccattagagagctgaagcatgtggggtggtgttggg--cttctattgtctctacgtaatccagcaacctgtccctgaggaagcctgataaggtctaaagaatgaatgagattactctaggtatggccaagtaggagttataattgcagcttttatgttgtctggctatcactggtagagca
i cerAty1.NW_012002535v1   I 3 C 0
s chlSab2.chr17            29185482 1088 -  71996105 aagtgtcggggtgttgtcctctgcaggctggggat-atggtaataaagatggtctcagagttgcatttattaatatccttgggaggagtgtgaccctgaagagacagagaccaagtggtgacagtgacctgcagaagccagagggcatggttactatggcaacttcagaggagcagccaagaggactcgagctgcaggtagtggggggaaggttaatagagggtgatgccccaaggttaggacaggcagcc-aacaagggcgctgcttgatgtttatgataagaaagaaagaactgaggagcaggagggtgaaggtgtttgacccaatacaaagtcacgatcccatcctcaatgcctagacctcaaccaagattcagattcagatctcagtgacaga---ggaggagtccatatccctaggagaaagaccctgcaaccccacggaagtatatgctgggacaattccctcagt-cattcggcagaggaacctatagtaatttacacaggagactgtacactgggg-aaaggaaacaggcagacctgggggg-attattagcactaggtgtgag-ctacatggatgcccagatgcccacagcaccatcatgtctctcatcaca-----gcttacggaggccagggagtaaacctggacacattatggcctacaatgggaccactggatccatagactcagccctcgttatcttccaattccctgagtgcataatt-gacactgatgcactgttaggtggagtcacccccacactgggtccctagtctatagagtaagggctgtcattgtgctgaaagcccaagggaaacctctgacactgcccccat-ctggccaaatcaaaaatcatagcgtgacccagg-tgcg---tcttgtggaagacattgcaagtattt--tggggtttgcaccaccaatagagagctgaaggatgaggggtggtgttgaggctgtctattgtgtctatgtaattcagcaacctgtccccgaggaagcctgaggaggtctaaagaatgaatgaaattactccaggtatggccaagtaggagttataattgcaacttttatgttgtctgaatatcaatgatagagca
i chlSab2.chr17            I 3 C 0
s cebCap1.NW_016107755v1     578376 1097 -   1771730 aagtgtcagggtgttgtcctctgcaggctgggggtgatggtagtaaaggtggtcccagggttgcatttatttgtatccctggggagagcgtggccctgaagagacaaagaccaagtagtggcagtgacctgcaaaagccagggggcaccattactatggcaacctcagaggagcaatgaagaggactcaagctgcagggaacgtgtggaa-gttaatagagggtggcgtcccagggttaggacagacagcc-aacaagggcactgcttgatatctatgacaggaaagcaagaattggggatcaggaggttgaaggtgtttgatgcgatacgaatttctgatcccatcctcaatctctagacctcatccaagattcagattcagatctcagtgacggaggaggaggagtccatatccc-aggaggaacaccctgcaaccctgtggaggtgtatgctgggacaattccctcaga-ccttcagcaaagaaacctatagccctttactcaggagactgtacactgggg-aaaggaaacaggcagaactaggggg-attactgacactgggtgtgagctgacactgatgccctgatgcccacagcactatcatg-cccccatcacagtggggcttacggaggtcagggagtaaacctggacatatttcggcccac-atgggaccactggatccatagactgagtccgggttatatcccattttgctgagtgcataatt-gacactgatgccctgctaagtgaaatcaccctcacactgagcccctagtctgtggcataagggctctcattgtgctgaaagtcagagggaaacttctgtcactgccctcatcctgggcaaatcaaaaatcatagtgtgttccagtgtgggtcttcttgtagaagacagtgaaagtattg--tgggggtcacaccaccattagagacctaaaggatgcagtgtggtg-cggggttctctgttgtgtctacgtgatccacccaactgtccctgagaaagcctgatgagtcctaaagaatgaatgggattactccaggtatgaccaaataggagttataattgcagcttttgtgttgtctga-tatcactggtagagcg
i cebCap1.NW_016107755v1   I 3 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     215572 9134 -    383796 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=109118.000000
s hg38.chr6_GL000254v2_alt  1344642 67 +   4827813 ggttaataaagccccgggcacacagtgtgccgctgtggatttggtgagtgcattcctttccactcca
s panTro5.chr6             30215528 67 + 175400573 ggttaataaagcccagggcacacagtgtgctgctgtggatttggtgagtgcattcctttccactcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30445713 67 + 173848474 ggttaataaagcccagggcacacagtgtgctgctgtggatttggtgagtgcattcctttccactcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     161201 67 +   2037526 ggttaataaagccccgggcacacagtgtgccgctgtggatttggtgagtgcattcctttccactcca
i gorGor5.CYUI01015528v1   C 0 C 0
s cerAty1.NW_012002535v1     177549 67 -    863181 gattaataaaacctcaggcacacagcgtgcagctgtggatttggtgagtgcatttctttccactcca
i cerAty1.NW_012002535v1   C 0 N 0
s chlSab2.chr17            29186570 66 -  71996105 gatt-ataaagcctcgggcacacagcatgtagctgtggatctggtgagtgcgttcctttccacttca
i chlSab2.chr17            C 0 C 0
s cebCap1.NW_016107755v1     579473 66 -   1771730 gactaataaagccttgggcacacagcgtgcagctgtggatttggtgagtgcgttcttttct-ctcca
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     215572 9134 -    383796 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=25380.000000
s hg38.chr6_GL000254v2_alt  1344709 18 +   4827813 attagaaagtggatatgg
s panTro5.chr6             30215595 18 + 175400573 attagaaagtggatatgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30445780 18 + 173848474 attagaaagtggatatgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     161268 18 +   2037526 attagaaagtggatatgg
i gorGor5.CYUI01015528v1   C 0 C 0
s chlSab2.chr17            29186636 18 -  71996105 attagaaagtggatatgg
i chlSab2.chr17            C 0 N 0
s cebCap1.NW_016107755v1     579539 18 -   1771730 attagaaagtggatatgg
i cebCap1.NW_016107755v1   C 0 I 9085
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     215572 9134 -    383796 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=1205167.000000
s hg38.chr6_GL000254v2_alt  1344727 2157 +   4827813 gctgggcgcagtagctcatgcctgtaatcccagctttgggaggccgaggccggtggattacctgaggtcaggagttctagaccatcctggccaacatggcaaaaccccgtctctattaaaaatacaaaaattagccaggcatcatgtcaggtgcctgtaatcccagctactcggggggccaaggcaggagaatcacttgaacacagaaggcagaggttgcagtgagccgagatcacgccattgcactccagcctaggggacaagagcaagactttgtcaaaaaaGAaaggaaggaag-------gaaggaaggaaggaagaggatatggagtgattcacattcatgtggaatcaacgacacatttatttattgtttgcctcagggctattgtaacacctgtgccctctatagtataggcttaagactgtactggacatactgcatatcctttaggatattaaatcagcacatttcattgacaacttcatgttgactggagtagatgagcagcaggaagaaagtgcactgtagtcctttgcaaaacacacgcaccccacaaggtgaagataaaccttatacagcttcaaaggtgggcactgaagtgaagttttatgggtgaacaagtgccaagtgtttaggggaatgcaggtgtgtcccctccaaggtaaaagaaaaactgttgcatcttgcatcctcaccagaagcaaggaagcacactgcttggtgagcctctttgaattataacaacaccacattccacatctagacattttgctttggcccacagtctaggtgacataggaggatgccagcttcaagtggggcctacacaggaaaggaccctgcagcagatccaggccatggtacaagcagccaccatccctcagacccc-tggggctggtggtgccagtggtggggaaagacacaggatggagctgaaccaagcaccagtgggagagtcacagtggagggcctgggattctggagtaagatcatgtcatccacagcagagacacatgccccctgttagaagcaacttttagtgttccttgtcctgattcaatagaatgtttgaccacgggataccaagcaactacggggttccaagtgcctgtgtgacccacaaagtcatagatggtacaggcccaacagcattcatcatcaggtgaaaacagtccacctgggttgagcttgaatcccttgctgacacccacagaaaacacccaagtctgaagtggcactgaactaccaaacagacaaatggcagttagccagctttcaccatgggtcagcccaggcctggtaggatgagtgcatgaatggagcaaccacagtggcaggcatgaggctccgtaaggggccagcagcactgacttccccacaccaaggcagatccagctgctgccacctctgaatgtccaactcatcagcaattgaggcccatgatgtgccctagtggggcactatttctttacatgactacccactaagtaacaagttgactacatttagctacttccaacctggaagggccagagtttcatcttcacagggttaggtaccgattctatgggtgggttttcctgtcctgctctcagacacagccagcaccactctctgggtgctgttgacattcctggtctgcaggctaggcagtgctcctagcccattatctgcctgaaggacccactttgcagggaaagtttcagtgtttccacggctgtgggttccactaatcctatcaccatctgcactacccaggagctgccagccacaaggaaggctggacaggtcttctacaggcacaactcagtgccagcctggaggaagcactctgaggggtgggtgccatctttcaggacacagtgcattgtttgaatcagagacgtctctagagttctgtgttctcaataggaagaacatgtgtgtccagaaatcaaaaggcggaagcaggtttggctccatgtccaatctcttagattcactcaatggggtatttcgcatattttatctcccaacactgggctgtgcaggatacgaggttctggtttccaaaggagtgtacccctaaaaggagacaaaagacagcccactgaactacacattactttagtcaccagagaagtttggacagtgtgtgcccagataccacttggtgagaag
s panTro5.chr6             30215613 2157 + 175400573 gctgggcgcggtagctcatgcctgtaatcccacctttgggaggccgaggccggtggatcacctgaggtcaggagttctagaccatcctggccaacatggcaaaaccccatctctattaaaaatacaaaaattagccaggcgtcatgtcaggtgcctgtaatcccagctactcggggggccaaggcaggagaatcacttgaacacagaaggcagaggttgcagtgagccgagatcacgccattgcactccagcctaggggacaagagcaagactttgtcaaaaaaGAaaggaaggaag-------gaaggaaggaaggaagaggatatggagtgattcacattcatgtggaatcaacgacacatttatttattgtttgcctcagggctattgtaacacctgtgccctctatagtataggcttaagactgtactggacatactgcatatcctttaggatattaaatcagcacatttcattgacaacttcatgttgactggagtagatgagcagcaggaagaaagtgcactgtagccctttgcaaaacacacgcaccccacaaggtgaagataaaccttatacagtttcaaaggtgggcactgaagtgaagttttatgggtgaacaagtgccaagtgtttagggaaatgcaggtgtgtcccctccaaggtaaaagaaaaactgttgcatcttgcaccctcaccagaagcaaggaagcacactgcttggtgagcctctttgaattataacaacaccacattccacatctagacattttgctttggcccacagtctaggtgacataggaggatgccagcttcaagtggggcctacacaggaaaggaccctgcagcagatccaggccatggtacaagcagccaccatccctcagaccccctggggctggtggtgccagtggtggggaaagacacaggatggagctgaaccaagcaccagtgggagagtcacagtggagggcctgggattctggagtaagatcatgtcatccacagtagagacacatgccccctgttagaagcaacttttagtgttccttgtcctgattcaatagaatgcttgaccacgggataccaagcaactacggggttccaagtgcctgtgtgacccacaaagtcatagatggtacaggcccaacagcattcatcatcaggtgaaaacagtccacctgggttgagcttgaatcccttgctgacacccacagaaaacacc-aagtctgaagtggcactgaactaccaaacagacaaatggcagttagccagccttcaccatgggtcagcccaggcctggtaggatgagtgcatgaatggagcaaccacagtggcaggcatgaggctccgtaaggggccagcagcactgacttccccacaccaaggcagatccagctgctgccacctctgaatgtccaactcatcagcaattgaggcccatgatgtgccctagtggggcactatttctttacatgactacccactaagtaacaagttgactacatttagctacttccaacctggaagggccagagtttcatcttcacagggttaggtaccgattctatgggtgggttttcctgtcctgctctcagacacagccagcaccactctctgggtgctgttgacattcctggtctgcaggctaggcagtgctcctagcccattatctgcctgaaggacccactttgcagggaaagtttcagtgtttccacggctgtgggttccactaatcctatcaccatctgcactacccaggagctgccagccacaaggaaggctggacaggtcttctacaggcacaactcagtgccagcctggaggaagcactctgaggggtgggtgccgtctttcaggacacagcgcattgtttgaatcagagacgtctctagagttctgtgttatcaataggaagaacatgtgtgtccagaaatcaaaaggcggaagcaggtttggctccatgtccaatctcttagattcactcaatggggtatttcgcatattttatctcccaacactgggctgtgcaggatacgaggttctggtttccaaaggagtgtacccctaaaaggagacaaaagacagcccactgaactacacattactttagtcaccagagaagtttggacagtgtgtgcccagagaccacttggtgagaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30445798 2156 + 173848474 gctgggcgcggtagctcatgcctgtaatcccacctttgggaggccgaggccggtggatcacctgaggtcaggagttctagaccatcctggccaacatggcaaaaccccgtctctattaaaaatacaaaaattagccaggcgtcatgtcaggtgcctgtaatcccagctactcggggggccaaggcaggagaatcacttgaacacagaaggcagaggttgcagtgagccgagatcacgccattgcactccagcctaggggacaagagcaagactttgtc-aaaaaGAaaggaaggaag-------gaaggaaggaaggaagaggatatggagtgattcacattcatgtggaatcaacgacacatttatttattgtttgcctcagggctattgtaacacctgtgccctctatagtataggcttaagactgtactggacatactgcatatcctttaggatattaaatcagcacatttcattgacaacttcatgttgactggagtagatgagcagcaggaagaaagtgcactgtagccctttgcaaaacacacgcaccccacaaggtgaagataaaccttatacagtttcaaaggtgggcactgaagtgaagttttatgggtgaacaagtgccaagtgtttaggggaatgcaggtgtgtcccttccaaggtaaaagaaaaactgttgcatcttgcatcctcaccagaagcaaggaagcacactgcttggtgagcctctttgaattataacaacaccacattccacatctagacattttgctttggcccacagtctaggtgacataggaggatgccagcttcaagtggggcctacacaggaaaggaccctgcagcagatccaggccatggtacaagcagccaccatccctcagaccccctggggctggtggtgccagtggtggggaaagacacaggatggagctgaaccaagcaccagtgggagagtcacagtggagggcctgggattctggagtaagatcatgtcatccacagcagagacacatgccccctgttagaagcaacttttagtgttccttgtcctgattcaatagaatgcttgaccacgggataccaagcaactacggggttccaagtgcctgtgtgacccacaaagtcatagatggtacaggcccaacagcattcatcatcaggtgaaaacagtccacctgggttgagcttgaatcccttgctgacgcccatagaaaacacc-aagtctgaagtggcactgaactaccaaacagacaaatggcagttagccagccttcaccatgggtcagcccaggcctggtaggatgagtgcatgaatggagcaaccacagtggcaggcatgaggctccgtaaggggccagcagcactgacttccccacaccaaggcagatccagctgctgccacctctgaatgtccaactcatcagcgattgaggcccatgatgtgccctagtggggcactatttctttacatgactacccactaagtaacaagttgactacatttagctacttccaacctggaagggccagagtttcatcttcacagggttaggtactgattctatgggtgggttttcctgtcctgctctcagacacagccagcaccactctctgggtgctgttgacattcctggtctgcaggctaggcagtgctcctagcccattatctgcctgaaggacccactttgcagggaaagtttcagtgtttccacggctgtgggttccactaatcctatcaccatctgcactacccaggagctgccagccacaaggaaggctggacaggtcttctacaggcacaactcagtgccagcctggaggaagcactctgagggatgggtgccgtctttcaggacacagcgcattgtttgaatcagagacgtctctagagttctgtcttatcaataggaagaacatgtgtgtccagaaatcaaaaggcggaagcaggtttggctccatgtccaatctcttagattcactcaatggggtatttcgcatattttatctcccaacactgggctgtgcaggatacgaggttctggtttccaaaggagtgtacccctaaaaggagacaaaagacagcccactgaactacacattactttagtcaccagagaagtttggacagtgtgtgcccagagaccacttggtgagaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     161286 2158 +   2037526 gctgggcgcggtagctcatgcctgtaatcccagctttgggaggctgaggccggtggatcacctgaggtcaggagttctagaccatcctggccaacatggcaaaaccccgtctctattaaaaatacaaaaattagccaggcgtcatgtcaggtgcctgtaatcccagctactcagggggccaaggcaggagaatcacttgaacacagaaggcagaggttgcagtgagccgagatcacgccattgcactccagcctaggggacaagagcaagactttgtcaaaaaagaaaggaaggaagaaggaaagaaggaaggaaggaagaggatatggagtgattcacattcatgtggaatcaacgacacatttatttattgtttgcctcagggctattgtaacacctgtgccctctatagtataggcttaagactgtactggacatactgcatatcctttaggatattaaatcagcacatttcattgacaacttcatgttgactggagtagatgagcagcaggaagaaagtgcactgtagtcctttgcaaaacacacgcaccccacaaggtgaagataaaccttatacagcttcaaaggtgggcactgaagtgaagttttatgggtgaacaagtgccaagtgtttaggg-aatgcaggtgtgtcccctccaaggtaaaagaaaaactgttgcatcttgcatcctcaccagaagcaaggaagcacactgcttggtgagcctctttgaattat---aacaccacattccacatctagacattttgctttggcccacagtctaggtgacataggaggatgccagcttcaagtggggcctacacaggaaaggaccctgcagcagatccaggccatggtacaagcagccaccat-cctcagaccccctggggctggtggtgccagtggtgaggaaagacacaggatggagctgaaccaagcaccagtgggagagtcacagtggagggcctgggattctggagtaagatcatatcatccacagcagagacacatgccccctgttagaagcaacttttagtgttccttgtcctgattcaatagaatgcttgaccacgggataccaagcaactacagggttccaagtgcctgtgtgacccacaaagtcatagatggtacaggcccaacagcattcatcatcaggtgaaaacagtccacctgggttgagcttgaatcccttgttgactcccacagaaaacacccaagtctgaagtggcactgaactaccaaacagacaaatggcagttagccagccttcaccatgggtcagcccaggcctggtaggatgagtgcatgaatggagcaaccacagtggcaggcatgaggctccgtaaggggccagcagcactgacttccccacgccaaggcagatccagctgctgccacctctgaatgtccaactcatcagcaattgaggcccatgatgtgccctagtggggcactatttctttacatgactacccactaagtaacaagttgactacatttagctacttccaacctggaa-ggccagagtttcatcttcacagggttaggtaccgattctatgggtgggttttcctgtcctgctctcagacacagccagcaccactctctgggtgctgttgacattcctggtctgcaggct-ggcagtgctcctagcccattatctgcctgaaggacccattttgcagggaaagtttcagtgtttccacggctgtgggttccactaatcctatcaccatctgtaccacccaggagctgccagccacaaggaaggctggacaggtcttctacaggcacaactcagtgccagcctggaggaagcactctgaggggtgggtgccatctttcaggacacagtgcattgtttgaatcagagacgtctctagagttctgtgttctcaataggaagaacatgtgtgtccagaaatcaaaaggcggaagcaggtttggctccatgtccaatctcttagattcactcaatggggtatttcgcatattttatctcccaacactgggctgtgcaggatatgaggttctggtttccaaaggagtgtacccctaaaaggagacaaaagacagcccactgaactacacattactttagtcaccagagaagtttggacagtgtgtgcccagagaccacttggtgagaag
i gorGor5.CYUI01015528v1   C 0 I 35
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     215572 9134 -    383796 I
e cebCap1.NW_016107755v1     579557 9085 -   1771730 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=119074.000000
s hg38.chr6_GL000254v2_alt  1346884 423 +   4827813 aagattctcctcctctccaggcccaggtaataaatagatcctcatccccaggagaaggcatggctgtttcacacaagggtagaagtgtgtgtggaaaccagagatccacctgggagccttctggtttcccttgccccattgtaagtgtgagcagaatcatccagcaattcagcctgagaggatttgatttccaagggcccagacccgtcagggcagaaggtttgagtcacacTTGTGGGCAATCTcccaaggccctgctcttgtgttctgacatcctcagtacattggtgctgaggccct-cttcccatgggctgttcccaatgactgatgggtcataccagtgacactaaggcaggacattcctaggagacaggggactcctctgatggccaattgtagctcgaggactcctctatggccttg
s panTro5.chr6             30217770 424 + 175400573 aagattctcctcctctccaggcccaggtaataaatagatcctcatccccaggagaaggcatggctgtttcacacaagggtagaagtgtgtgtggaaaccagagatccacctgggagccttctggtttcccttgccccattgtaagtgtgagcagaatcatccagcaaatcagcctgagaggatttgatttccaagggcccagacccgccagggcagaaggtttgagtcacactcgtgggtaaTCTcccaaggccctgctcttgtgctctgacatcctcagtacattggtgctgaggccctgcttcccatgggctgttcccaacgactgatgggtcataccagtgacactaaggcaggacattcctaggagacaggggactcctctgatggccaattgtagctcgaggactcctctatggccttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30447954 424 + 173848474 aagattctcctcctctccaggcccaggtaataaatagatcctcatccccaggagaaggcatggctgtttcacacaagggtagaagtgtgtgtggaaaccagagatccacctgggagccttctggtttcccttgccccattgtaagtgtgagcagaatcatccagcaattcagcctgagaggatttgatttccaagggcccagacccgccagggcagaaggtttgagtcacactcgtgggtaaTCTcccaaggccctgctcttgtgctctgacatcctcagtacattggtgctgaggccctgcttcccatgggctgttcccaacgactgatgggtcataccagtgacactaaggcaggacattcctaggagacaggggactcctctgatggccaattgtagctcgaggactcctctatggccttg
i panPan2.chr6             C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     215572 9134 -    383796 I
e cebCap1.NW_016107755v1     579557 9085 -   1771730 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444  35 +   2037526 I

a score=780.000000
s hg38.chr6_GL000254v2_alt  1347307 2 +   4827813 ct
s panTro5.chr6             30218194 2 + 175400573 ct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30448378 2 + 173848474 ct
i panPan2.chr6             C 0 C 0
s saiBol1.JH378341           120414 2 +    515838 cc
i saiBol1.JH378341         N 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     215572 9134 -    383796 I
e cebCap1.NW_016107755v1     579557 9085 -   1771730 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e manLeu1.NW_012107142v1      58821 78493 -    735854 I
e macNem1.NW_012012100v1     146897 5498 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=13095.000000
s hg38.chr6_GL000254v2_alt  1347309 3 +   4827813 cag
s panTro5.chr6             30218196 3 + 175400573 cag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30448380 3 + 173848474 cag
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30613419 3 + 172585720 cag
i rheMac8.chr4             N 0 C 0
s macNem1.NW_012012100v1     152395 3 +   1495729 cag
i macNem1.NW_012012100v1   I 5498 C 0
s cerAty1.NW_012002535v1     325502 3 -    863181 cag
i cerAty1.NW_012002535v1   N 0 C 0
s chlSab2.chr17            29359804 3 -  71996105 cag
i chlSab2.chr17            N 0 C 0
s manLeu1.NW_012107142v1     137314 3 -    735854 cag
i manLeu1.NW_012107142v1   I 78493 C 0
s saiBol1.JH378341           120416 3 +    515838 cag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     588642 3 -   1771730 cag
i cebCap1.NW_016107755v1   I 9085 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     215572 9134 -    383796 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=24880.000000
s hg38.chr6_GL000254v2_alt  1347312 6 +   4827813 tgaagt
s panTro5.chr6             30218199 6 + 175400573 tgaagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30448383 6 + 173848474 tgaagc
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30613422 6 + 172585720 tgaagc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     152398 6 +   1495729 tgaagc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     325505 6 -    863181 cgaagc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29359807 6 -  71996105 tgaagc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     137317 6 -    735854 cgaagc
i manLeu1.NW_012107142v1   C 0 C 0
s saiBol1.JH378341           120419 6 +    515838 ggaaac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     588645 6 -   1771730 tgaagc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     224706 6 -    383796 tgaagc
i aotNan1.NW_018496904v1   I 9134 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=440861.000000
s hg38.chr6_GL000254v2_alt  1347318 82 +   4827813 cctcagatgatgcaggcctaggctg-acaactggactgcaaccttgtgagaggccc-tgagccagaagcactcagggaaacctc
s panTro5.chr6             30218205 82 + 175400573 cctcagatgatgcaggcctaggctg-acaactggactgcaaccttgtgagaggccc-tgagccagaagcactcagggaaacctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30448389 82 + 173848474 cctcagatgatgcaggcctaggctg-acaactggactgcaaccttgtgagaggccc-tgagccagaagcactcagggaaacctc
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30613428 82 + 172585720 cctcagatgatgcagcccttgactg-acaactggactgcaaccttgtgagaggccc-tgagccagaagcactcagggaaactta
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     152404 82 +   1495729 ccttagatgatgcagcccttgactg-acaactggactgcaaccttgtgagaggtcc-tgagccagaagcactcagggaaacctc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     325511 82 -    863181 cctcagatgatgcaggcctaggctg-acaactggactgcaactttgtgagaggccc-tgagcaagaagcactcagggaaacctc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29359813 82 -  71996105 cctcagatgatgcaggcctaggctg-acaactggactgcaaccttgtgagaggccc-tgagccagaagcactcagggaaacctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     137323 82 -    735854 cctcagatgatgcaggcctaggctg-acaactggactgcaaccttgtgagaggccc-tgagccagaagcactcagggaaacctc
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30305589 82 + 171630274 cctcagatgatgcagcccttggctg-acaactagactacagccttgtgagtggaac-tgagccagaagcactcagggaaacctc
i calJac3.chr4             N 0 C 0
s saiBol1.JH378341           120425 82 +    515838 gctcagatgatgcagccctcggctg-acaactggactacagccttgtgagaggaac-tgagccagaagcactcagggaaacttc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     588651 82 -   1771730 cctcagatgatgcagcccttggctg-acaactggactacagccttctgagaggaac-tgagccagaagcacttagggaagcctc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     224712 84 -    383796 cctcagatgatgcagcccttggctgaacaacttgactgcagccttgtgagaggaacttgacgcagaagcactcagggaaacctc
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e colAng1.NW_012115577v1      97231 58248 -   1829203 T
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=427681.000000
s hg38.chr6_GL000254v2_alt  1347400 74 +   4827813 tcctggatttctgatcattggaaactgtgggagatgaggaatatttgttgttctgag-ctgctaag-ttttacata
s panTro5.chr6             30218287 74 + 175400573 tcctggatttctgatcattggaaactgtgggagatgaggaatatttgttgttttgag-ctgctaag-ttttacata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30448471 74 + 173848474 tcctggatttctgatcattggaaactgtgggagatgaggaatatttgttgttttgag-ctgctaag-ttttacata
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30613510 71 + 172585720 tcctggattcttaaccattggaaactatgggagatgatgaatatttgtttttttga----gctaag-tgttacata
i rheMac8.chr4             C 0 I 14
s macNem1.NW_012012100v1     152486 74 +   1495729 tcctggattcctgatcattggaaactgtgagagatgaggaatatttgttgttttaag-ctgctaag-ttttacata
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     325593 74 -    863181 tcctggattcctgatcattggaaactgtgagagatgaggaatatttgttgttttgag-ctgctaag-ttttatata
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29359895 73 -  71996105 tcctggattcctgatcattggaaactgtgagagataaggaatatttgttgttttgag-ctgctaag-ttttac-ta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     137405 74 -    735854 tcctggattcctgatcattggaaactgtgagagatgaggaatatttgttgttttgag-ctgctaag-ttttacata
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      38983 71 -   1829203 tcctggatttctaaccatcggaaactgtgggacatgaggaatatctgctgttttga----gctaag-ttttacata
i colAng1.NW_012115577v1   T 58248 C 0
s calJac3.chr4             30305671 74 + 171630274 tcctggattcctgatcattgaaaactgtgggaaaaaatgaatatttgttgttttaag-ctgataag-ttttacata
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           120507 74 +    515838 tcctgggttcctgaacattggaaactgtgggagatgatgaatatttgttgttctgag-ctgctaag-ttttacata
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     588733 74 -   1771730 tcctggattcctgaccattggaaactgtgggagacaatgaatatttgttgttttgag-ctgctaag-ttttacata
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     224796 74 -    383796 tcctggatcactgaccattggaaac--tgggagatgatgaatatttgttgttttgagcctgctaagtttttacata
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=50344.000000
s hg38.chr6_GL000254v2_alt  1347474 12 +   4827813 atttgttatgca-
s panTro5.chr6             30218361 12 + 175400573 atttgttatgca-
i panTro5.chr6             C 0 I 1
s panPan2.chr6             30448545 12 + 173848474 atttgttatgca-
i panPan2.chr6             C 0 I 1
s macNem1.NW_012012100v1     152560 12 +   1495729 atttgttatata-
i macNem1.NW_012012100v1   C 0 I 2507
s cerAty1.NW_012002535v1     325667 12 -    863181 atttgttatgta-
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29359968 12 -  71996105 attttttatgta-
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1     137479 12 -    735854 atttgttatgta-
i manLeu1.NW_012107142v1   C 0 I 1
s colAng1.NW_012115577v1      39054 12 -   1829203 atgtgttatgca-
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30305745 13 + 171630274 atttgttatgcaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           120581 13 +    515838 atttgttatgcaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     588807 13 -   1771730 atttgttatgcaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     224870 13 -    383796 atttgttatgcaa
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e macFas5.chr4             29963949 33443 - 170955103 I
e rheMac8.chr4             30613581 14 + 172585720 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=39150.000000
s hg38.chr6_GL000254v2_alt  1347486 6 +   4827813 tagtaa
s panTro5.chr6             30218374 6 + 175400573 tagtaa
i panTro5.chr6             I 1 C 0
s panPan2.chr6             30448558 6 + 173848474 tagtaa
i panPan2.chr6             I 1 C 0
s nomLeu3.chr1a            74719764 6 + 122973662 tagtaa
i nomLeu3.chr1a            N 0 C 0
s macNem1.NW_012012100v1     155079 6 +   1495729 tagtaa
i macNem1.NW_012012100v1   I 2507 C 0
s cerAty1.NW_012002535v1     325680 6 -    863181 tagtaa
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29359981 6 -  71996105 tagtaa
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1     137492 6 -    735854 tagtaa
i manLeu1.NW_012107142v1   I 1 C 0
s colAng1.NW_012115577v1      39067 6 -   1829203 ttgtaa
i colAng1.NW_012115577v1   I 1 C 0
s calJac3.chr4             30305758 6 + 171630274 tagtaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           120594 6 +    515838 tagtaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     588820 6 -   1771730 taataa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     224883 6 -    383796 tagtaa
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e macFas5.chr4             29963949 33443 - 170955103 I
e rheMac8.chr4             30613581 14 + 172585720 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=1333949.000000
s hg38.chr6_GL000254v2_alt  1347492 196 +   4827813 ataactaatacaTTTTCACAAGACAGGATGCATTATTACATGTTAATTTGCATTTGCTCTAAATTT---ATCATCATCATT--------------------------ATTATTAtttttgagacagggtctcactctg--tcacccaggctggagtg-cagtggcatgatcaccat-gcactgc-agtgtcgacctcctgggctcaagggatcctctgaccttagcctcc
s panTro5.chr6             30218380 195 + 175400573 ataattaatacaTTTTCACAAGACAGGATGCATTATTACA-GTTAATTTGCATTTGCTCTAAATTT---ATCATCATCATC--------------------------ATTATTAtttttgagacagggtctcactctg--tcacccaggctggagtg-cagtggcatgatcaccat-gcactgc-agtgtcgacctcctgggctcaagggatcctctgacctcagcctcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30448564 195 + 173848474 ataactaatacaTTTTCACAAGACAGGATGCATTATTACA-GTTAATTTGCATTTGCTCTAAATTT---ATCATCATCATC--------------------------ATTATTAtttttgagacagggtctcactctg--tcacccaggctggagtg-cagtggcatgatcaccat-gcactgc-agtgtcgacctcctgggctcaagggatcctctgacctcagcctcc
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74719770 196 + 122973662 ataactaatacaTTTTCACAAGAGAGGATGTATTATTACACGTTAAATTGCATTTGCTCTAAATGT---ATCATCATCATT--------------------------ATTATTAtttttgagacagggtctcactcta--tcacccaggctggagtg-cagtagcatgatcaccat-gcactgc-agtgtcaacctgctgggctcaagggaccctctgatctcagcatcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30613595 196 + 172585720 ataaataaTACATTTTCACAAGAGAGGATGTATTATTACATGTTAAATTGCATTTGCTCTAAATGT---ATCATCATCATC--------------------------ATTATTAtttttgagacaaggtctcactctg--taacccaggctggagtg-cggtggcatgatcaccat-gcactgc-agtgtcgacctcctgggctcaagggaccctctgatctcagcctcc
i rheMac8.chr4             I 14 C 0
s macNem1.NW_012012100v1     155085 196 +   1495729 ataactaatacaTTTTCACAAGACAGGGTGTATTATTACATGTTAGTTTGCATTTACTCTAAATTT---ATCATCATCATT--------------------------ATTATTAtttctaagacaggatctcactctg--tcacccaggctggagtg-cggtggcatgatcaccat-gcactgc-agtgtcgacctgctgggctcaaaggaccctctgatctcagcatcc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     325686 196 -    863181 ataactaatacaTTTTCACAAGACAGGGTGtattattacatgttagttttcatttactctaaattt---atcatcatcatt--------------------------attattattTCCAagacaggatctcgctctg--tcacccaggctggagtg-tggtggcatgatcaccat-gcactgc-agtgtcgacctgctgggctcaagggaccctctgatctcagcctcc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29359987 196 -  71996105 ataactaatacaTTTTCACAAGACAGGGTGTATTATTACATGTTAGTATGCATTTACTCTAAATTT---ATCATCATCATT--------------------------ATTATTAtttctaagacaggatctcattctg--tcacccaggctggagtg-tggtggcatgatcaccat-gcactgc-agtgttgacctgctgggctcaagggaccctctgatctcagcctcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     137498 196 -    735854 ataactaatacaTTTTCACAAGACAGAGTGTATTATTACATGTTAGTATGCATTTACTCTAAATTT---ATCATCATCATT--------------------------ATTATTAtttctaagacaggatctcattctg--tcacccaggctggagcg-cagtggcatgatcaccat-gcactgc-agtgtcgacctgctgggctcaagggaccctctgatctcagcctac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      39073 222 -   1829203 ataactaatacaTTTTCACAAAAGAGGATGTATTATTACATGTTAAATTGCATTTGCTCTAAATTT---ATCATCATCATTATTAtttttttttttttttcttcatcattattatttttgagacagggtctcactctg--tcacccaggctggagtg-cagtggcatgatcaccat-gcactgc-agtgtcgacctcctggggtcaagggaccctgtgatctcagcctcc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30305764 192 + 171630274 ataacta----atTTTCACAAGAGAGGATGTATTACTACACATTAATTTGTATTTGCTCTAAATTT---ATCATCATCATA--------------------------ATTACTAtttttgagacagggtcactctctg--tcacccaggctggagtg-cagtggcatgatcaccat-gcacagc-agtgctgacctcctgggctcaaggggtcctgtgacctcagcctcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           120600 195 +    515838 ataatta----atTTTGACAAGAGGGGATGTATTATTACACATTAATTTGCATTTGCTCTAAATTTATCATCATCATCATC--------------------------ATTATTAtttttgagacagggtctcactctg--tcacccaggctggagtg-cagtggcatgatcaccat-gcactgc-agtgttgatctcctgggctcaagggatcctgtgacctcagcctcc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     588826 189 -   1771730 ataacta----atTTTCACAAGAGAGGATGTATTATTACACATTAATTTGCATTTGCTCTTAATTT------ATCAACATC--------------------------ATTATTAtttttgagacagggtcatgctctg--tcacccaggctgaagtg-cagtgtcatgatcaccat-gcactgc-agtttcgacctcctgggctcaagggatcctgtgacctcagcctcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     224889 194 -    383796 ataacta----atTGTTCACCGAGAGGATGTATTATTACACATTAATTTGCATTTGCTCTAAATTT---ATCATCAttgtt--------------------------attatta-ttttgagaca-ggtctcactctggttcacccaggtaggagtgtcagtggcatgatcaccatggcactgctagtgtcgacct-ctaggctcaagggatcctgtgacctcagcctcc
i aotNan1.NW_018496904v1   C 0 I 24
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444  35 +   2037526 I

a score=141711.000000
s hg38.chr6_GL000254v2_alt  1347688 22 +   4827813 tgagtagctgggactatagtca
s panTro5.chr6             30218575 22 + 175400573 tgagtagctgggactatagtca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30448759 22 + 173848474 tgagtagctgggactatagtca
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74719966 22 + 122973662 tgagtagctgggactacaggca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30613791 22 + 172585720 tgagtagctgggactacaggca
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     155281 22 +   1495729 tgagtagctggggctacaggca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     325882 22 -    863181 tgagtagctgggactacaggca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29360183 22 -  71996105 tgagtagctgggactacaggca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     137694 22 -    735854 tgagtacctgggactacaggca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      39295 22 -   1829203 taagtagctgggactacaggca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30305956 22 + 171630274 tgagtatctgggactacaggca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           120795 22 +    515838 tgagtatctgggactacagaca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     589015 22 -   1771730 tgagtatctgggactacaggca
i cebCap1.NW_016107755v1   C 0 I 1
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e aotNan1.NW_018496904v1     225083 24 -    383796 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=989969.000000
s hg38.chr6_GL000254v2_alt  1347710 154 +   4827813 tgaaccaccatgcc-aggctaattttctag-----------------tttttttgtagagatgaga-gtttcaccatgttgcccag-gctgatcttgaacttctggagtcaacaagtc-tgcct-tcctctgccttccatagtgctaggatggcaggcgtgagccaccacccct-gc
s panTro5.chr6             30218597 154 + 175400573 tgaaccaccatgcc-aggctaattttctag-----------------tttttttgtagagatgaga-gtttcaccatgttgcccag-gctgatcttgaacttctggagtcaacaagtc-tgcct-tcctctgccttccgcagtgctaggatggcaggcgtgagccaccacccct-gc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30448781 154 + 173848474 tgaaccaccatgcc-aggctaattttctag-----------------tttttttgtagagatgaga-gtttcaccatgttgcccag-gctgatcttgaacttctggagtcaacaagtc-tgcct-tcctctgccttccgcagtgctaggatggcaggcgtgagccaccacccct-gc
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74719988 154 + 122973662 tgaaccaccatgcc-tggctaattttctaa------------------ttttttgtagagatgggg-gttttgccatgttgcccag-gctgatcttgaacttctggagtcaacaaatc-tgcct-tcctcttccttccacagtgctaggatggcaggtgtgagccaccacacctggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30613813 147 + 172585720 tgaaccaccatgcc-tgactaattttctaa-----------------tttttttgtagagatgggg-gtt--------ttgcccag-gctgatcttgaacttctggagtcaacaaatc-tgcct-tcctctgccttccacagtgctaggatagcaggtgtgagccaccacatatggc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     155303 155 +   1495729 tgaaccaccatgcc-tgactaattttctaa-----------------cttttttgtagggatgagg-gcttcaccatgttgcccag-gctgatcttgaacttctgcagtcaacaaatt-tgcct-tcttctgccttccacagtgctagaatcacaggcgtgagccaccacacctggc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     325904 155 -    863181 tgaaccaccatgcc-tgactaattttctaa-----------------cttttttgtagagatgagg-gcttcaccatgttgcccag-gctgatcttcaacttctggagtcaacaaatt-tgccg-tcttctgccttccacgatgctaggatgacaggcgtgagccaccacacctggc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29360205 155 -  71996105 tgaaccaccatgcc-tgactaattttctaa-----------------cttttttgtagagatgagg-gcttcaccatgttgcccag-gctgatcttgaacttctggagtcaacaaatt-tgcct-tcttctgccttccacgatgctaggatgacaggcgtgagccaccacacctggc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     137716 155 -    735854 tgaaccaccacgcc-tgactaattttctaa-----------------cttttttgtagagatgagg-gcttcaccatgttgcccag-gctgatcttgaacttctggagtcaacaaatt-tgcct-tcttctgccttccacgatgctaggatgacaggcgtgagccaccacacctggc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      39317 153 -   1829203 tgaaccaccatgcc-tggctaattttctaa------------------ttttttgtagagatg-gg-gtttcaccatgttgcccag-gcttctcttgaacttctagaatcaagaaatc-tgcct-tcctctgccttccacagtcgtaggattgcaggcgtgagccactacacctggc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30305978 172 + 171630274 tgaaccgccatgcc-tggctaattttctaatttttttttgttttttttttttttgtagagatggag-gtttgaccatgtttcccag-gctgatcttgaacttctggagtcaacaaatc-tgcct-tcctctgctttccacagttctaggattgcaggcatgagacaccacaacaggc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           120817 159 +    515838 taagcaaccatgcc-tggctgattttctaa-------------aatttttttttgtagagatgggg-gtttgactgtgtgtcctag-gctgatcttgaacttctggagtcaacaaatc-tgcct-tcctctgctttccacagtgctaggattgcaggcacaagccactacaccagac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     589038 155 -   1771730 tgaac--ccatgct-tggctaattttctaa---------------tttttttttgtagagatgtgg-gtttaaccatgtttcccag-gctgatcttgaatttctgtagtcaacaaatc-tgcct-tcctctgctttccacagtactagtattgcaggtgtgagccaccacaccaggc
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496904v1     225107 158 -    383796 tgaaccaccatgccgtgcctaattttctaa----------------ttttttttgtagagatggagagtttaaccatgtttcacagaactgatattgaa-ttctggagtcaacaaatcttgcctgtcgtctgctttccacagtgctaggattgca--catgagccaccacaccaggc
i aotNan1.NW_018496904v1   I 24 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17353344 7328 -  18854210 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444  35 +   2037526 I

a score=1808980.000000
s hg38.chr6_GL000254v2_alt  1347864 244 +   4827813 cTAACTtaa-ttataagac-attaaacatgtaacttagtttt-aaaaggaaaggagaagttccatggctgaagaggatgtattttattatcgttca-caatgatcactttacttgaacttc--aatttccaactgtgtcccaattaaacacaaaaggaagaTTCA--TCCCTTGCTAGAGTGattctatgatgg-ccccaacaaccacctcctgg-tcattcaccttcccccagttattcaaccaactctaatg
s panTro5.chr6             30218751 244 + 175400573 cTAACTtaa-ttataagac-attaaacatgtaacttagtttt-aaaaggaaaggagaagttccatggctgaagacgatgtattttattatcgttca-caatgatcactttacttgcacttc--aatttccaactgtgtcccaattaaacacaaaaggaagaTTCA--TCCCTTGCTAGAGTGattctatgatgg-ccccaacaaccacctcctgg-tcattcaccttcccccagttattcgaccaactctaatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30448935 244 + 173848474 cTAACTtaa-ttataagac-attaaacatgtaacttagtttt-aaaaggaaaggagaagttccatggctgaagaggatgtattttattatcgttca-caatgatcactttacttgcacttc--aatttccaactgtgtcccaattaaacacaaaaggaagaTTCA--TCCCTTGCTAGAGTGattctatgatgg-ccccaacaaccacctcctgg-tcattcaccttcccccagttattcgaccaactctaatg
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74720142 244 + 122973662 cTAAATtaa-ttataagat-attaaacttgtaacttagtttt-aaaaggtaaggagaatttccatggctgaaaaggatgtatttgatgaccattca-caatgatcactttacttgaacttc--aatttccaactgtgtcctaattaaacacaaaTTGAAGATTCT--ACCCTtgctaggctgattctatgatgg-cctcaacaaccagctcctgg-tcattcaccttcctccagttactcaatcaactctaata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30613960 244 + 172585720 cTaaagtaa-ttataagac-attaaacacgtgacttagtttt-caaaggtaaggagaatttccatggccgaagacgatgtcgtttaatatcgttcg-caatgatcactttacctgaacttc--aatttgcaactgtgtcccaattaaacacaaaaggaagaTCCA--AACCTtgctaggctgattctatgatgg-ccccaacagccagctcctgg-tcattcaccttcccccagtgattcaaccaactctaatG
i rheMac8.chr4             C 0 N 0
s macNem1.NW_012012100v1     155458 244 +   1495729 cTAAATtaa-ttataagat-attaaacatgtaacttagtttt-aaaaggtaaggagaatttccatggctgaagaggatgcattttattaccgttca-caatgatcactttacttgaacttc--aatttccaactgtgtcccaattaaacacaaaaggaagaTCCA--ACCATtgctaggctgactctatgatgg-ccccaactaccacctcctgg-tcattcaccttcccccagttattcaaccaactctagtg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     326059 244 -    863181 cTAAATtaa-ttataagat-attaaacatgtaacttagtttt-aaaaggtaaggagaatttccacggctgaagaggatgcattttattaacattca-caatgatcactttacttgaacttc--aatttccaactgtgtcccaattaaacacgaaaggaagaTCCA--ACCCTtgctaggctgactctatgatgg-ccccaactaccacctcctag-tcattcaccttcctccagttattcaaccaactctagtg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29360360 244 -  71996105 cTAAATTAA-TTATAAGAT-ATTAAACATGTAACTTAGTTTT-AAAAGGTAAGGAGAATTTCCACGGCTGAAGAGGATGCATTTTATTACCGTTCA-CAATGATCACTTTACCTGAACTTC--AATTTCCAACTGTGTCCCAATTAAACACAAAAGGAAGATCCA--ACCGTTGCTAGGCTCactctatgatgg-ccccaactaccacctcctgg-tcattcaccttcctccagttattcaaccacctctagtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     137871 244 -    735854 cTAAATtaa-ttataagat-attaaacatgtaacttagtttt-aaaaggtaaggggaatttccacggctgaagaggatgcattttattaccgttca-caatgatcactttacttgaacttc--aatttccaactgtgtcccaattaaacacaaaaggaagaTCCA--ACCATTGCTGGGCTGattctatgatgg-ccccaactaccacctcctgg-tcattcaccttcccccagttattcaaccaactctagtg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      39470 244 -   1829203 TTAAATtaa-ttctaagat-attaaacatgtaacttagtttt-aaaaggtaaggagaatttccatggctgaaaaggatgtattttatgaccattca-caatgatcactttacttgaacttc--aatttccaagtatgtcccaattaaacacaaaacgaagaTTCA--ACCCTtgctagacagattctatcatgg-cctcaacaacaagctcctgg-tcattcaccttcccctagttattcaaccaactctaatg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30306150 243 + 171630274 cTAAATTAA-CTATAAGAT-ATTAAACATGTAACTTACTTGT-AAaaggtaaggagaatttccatggctgaagacgatgtattttattactattca-caatgatctctttactcgaacttc--agttttcaactgtgtc-caattaaacac-aaaggaaGATCCA--ACCCTtgctaggctgattctatcatggccctcaggaaccacctcctgg-tcactcaccttcccccagttattcaaccaactctaagg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           120976 230 +    515838 cTAAATTAG-Ctataagat-attaaatatgtaactcagttgt-aaaaggtaaggagaatttccatggctgaagagaacgtattttattaccgttca-cgatgatcactttacttgaacttc--aatttccaactgtatctcaattaaacataaaagaaagattcc--atttttgctaggctgattctatgatggcccccaa----------------tattcaccttcccccagttattcaaccgactctaatg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     589193 245 -   1771730 cTAAATTAG-CTATAAGAT-ATTACACATGTAACTTAGTTGT-AAAAGGTaaggagaatttccatggctgaagaggatgtattttattaccgttca-caatgatcactttacttgaacttc--agtttccaactgtgtctcaattaaacacaaaaggaagaTCCA--ACCCTtgctaggctgattctatcatgccccccaacaaccacctcctgg-tcatttaccttcccccagttattcaaccaactctaatg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     225265 247 -    383796 TTAAATTAATCTATAAGATAATTAAACATGTAACTTACTTGTAAAAAGGTAAGGAGAATTTCCAT-GCTGAAGAGGATGCATTTT-TTACCATTCACCAATGATCA-TTTACTTGAACCTTCAAATTTCCAACTGG---TCAATTAAACACAAAAGGAAGATCCAACACCTTtgctaggctgattctgtatctggccccagcaaccacctcctggctcattcaccttccctcagtta-tcaaccaactctaatg
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17360672 242 -  18854210 ctacattaa-ttgtaagat-attaaacatgtcatttagtttt-aggatgtaagaagaatttccatggctaaaaaggatgcattttattaccattca-caaccaactattcatttgaaattc--tgtttccaactgtgaccc-attaaacacaatgagaagaccca--ggccatgctaggctgattctatgatatcccccaataaccaccccctgg-ttattcaccttccctcag--gttcaattaacactaatg
i otoGar3.GL873550         I 7328 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444  35 +   2037526 I

a score=1481147.000000
s hg38.chr6_GL000254v2_alt  1348108 199 +   4827813 taggtgctgctgtgaaggaattt-agcagacataataaaggggctcaattagttgacttc-aggctg--ggtttatgctgcttggactgtcctaatcaggagagtccttgaaaggactgggttcttcctgagcatagagattcacagtgtgagagggattcagcatgaggggtttcctccactgtgggctttgaaaatgaagg
s panTro5.chr6             30218995 199 + 175400573 taggtgctgctgtgaaggaattt-agcagacataataaaggggctcaattagttgacttt-aggctg--ggtttatgctgcttggactgtcctaatcaggaaagtccttgaaaggactgggttcttcctgagcatagagattcacagtgtgagagggactcagcatgaggggtttcctccactgtgggctttgaaaatgaagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30449179 199 + 173848474 taggtgctgctgtgaaggaattt-agcagacataataaaggggctcaattagttgacttt-aggctg--ggtttatgctgcttggactgtcctaatcaggagagtccttgaaaggactgggttcttcctgagcatagagattcacagtgtgagagggactcagcatgaggggtttcctccactgtgggctttgaaaatgaagg
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74720386 199 + 122973662 taggtgctgttgtgaaaggattt-agcagatataattaagggcctcaattagttgacttt-aggcta--ggtttatcctgcttggactgtcctaatcaggtgagcccttgaaaggacagggttcttcctgaacatagagattcacagtgtgagagggactcagtatgaggggtttcctccaccatggggtttgaaaatgaagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30482548 199 + 172585720 taggtgccgctgtgaagggattt-agcagatacaattaaggggctcaattagttgacttt-aggctg--ggtttctcctgcttggactgttctaatcaggtgagcccttgaaaggactgggttcttcctgagcatagagaaatgcagtgtgagaggcattcagcatgaggggtttcctccaccgtgggctttgaaaatgaagg
i rheMac8.chr4             N 0 C 0
s macNem1.NW_012012100v1     155702 199 +   1495729 taggtgctgctgtgaagggattt-agcagatataattaagggcctcaattagttgacttt-aggctg--ggtttatcctgcttggactgtcctaatcaggtgagcccttgaaaggactgggttcttgctgagcatagagattcacagtgtgagaggtactcagcatgaggggtttcctccactgtgggctttgaaaatgaagg
i macNem1.NW_012012100v1   C 0 I 3749
s cerAty1.NW_012002535v1     326303 199 -    863181 taggtgctgctgtgaagggattt-agcagatataattaagggcctcaattagttgacttt-agactg--ggtttctcctgcttggactgtcctaatcaggtgagcccttgaaaggactgggttcttgctgagcatagagattcgcagcgtaagaggcactcagcatgaggggtttcctccactgtgggctttgaaaatgaagg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29360604 199 -  71996105 taggtgctgctgtgaagggattt-agcagatataattaagggcctcaattagttgacttt-aggctg--ggtttctcctgcttggactgtcctaatcaggtgagcccttgaaaggaccaggttcttcctgagcatagagattcacagtgtgagaggtactcagcatgaggggtttcctccactgagggctttgaaaatgaagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     138115 199 -    735854 taggtgctgctgtgaagggattt-agcagatataattaagggcctcaattagttgacttt-aggctg--ggtttatcctgcttggactgtcctaatcaggtgagcccttgaaaggactgggttcttgctgagcatagagattcacagtgtgagaggcactcagcatgaggggtttcctccactgtgggctttgaaaatgaagg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      39714 199 -   1829203 taggtgctgctatgaagaggttt-agcagacataattaagggcctcaattagttgacttt-aagctg--ggtttatcctgtttgcactgtcctaatcaggtgagcccttgaaaggactggattattcctgagcatagagttccacagtgtgagaggcactcagcatgaggggtttcctccaacatggggtttgaaaatgaaag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30306393 199 + 171630274 taggtgctgctgtgaagggattc-agcagatataattaagggcctcaattagttgacttt-aggctg--ggtttatcctgctcagactgtcctaatcagctgagcccttgaaaggactgggtccttcctgagcatagagattcacagtgtgagacggattcagcatgaggggtttcctccactgtgggctttgaaaatgaagg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           121206 198 +    515838 taggtgccgctgtgaagggattc-agcagatataattaagggcctcaattagttgac-tt-atactg--ggtttatcctgcttggactgtcctaaacaagtgagcctaggaaataactaggtccttcctgagcgtagagattcacagtgtgagagggattcagcatgaggggtttcctccacagtgggctttgaaaatgaagg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     589438 196 -   1771730 taggtgctgttgtgacgggattt-agcagatataattaagggcatcaat---ttgacttt-agtctg--gctttatcctgcttgcactgtcctaatcagctgagcccttgaaaagactgggttctccctgagcacagagattcacagtatgagagggattcagcatgagtggtttcctccactgtggactttgaaaatgaagg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     225512 195 -    383796 taggtgctg-tatgaagggattcaagcagatataattaagggccataattagttgactttaagtctg--ggtttattctctgtgcactgtcctaatcagctgagcctctgaaa-gact-ggttctccctgagcatagagattca-atcgtgagagggatttcagatgagggatttcctcca-ggtgggctttg-aaatgaagg
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17360914 187 -  18854210 tagatattgctatgaaagaattt--gcagatataattaaagtcccaaatcagttgacttt-aagatggtgattatccctgaatgaactgtcctaatcagatgagttcttaaaa-cagtgggtttgtcctgagcacc-agattcacagggagaaagggaattagtgtgaat-----------ctttgggctttgaaagaggaca
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444  35 +   2037526 I

a score=24970.000000
s hg38.chr6_GL000254v2_alt  1348307 4 +   4827813 ggct-
s panTro5.chr6             30219194 4 + 175400573 ggct-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30449378 4 + 173848474 ggct-
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74720585 4 + 122973662 ggct-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30482747 4 + 172585720 ggct-
i rheMac8.chr4             C 0 I 58770
s macNem1.NW_012012100v1     159650 4 +   1495729 ggct-
i macNem1.NW_012012100v1   I 3749 C 0
s cerAty1.NW_012002535v1     326502 4 -    863181 gact-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29360803 4 -  71996105 ggct-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     138314 4 -    735854 ggct-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      39913 4 -   1829203 gTCT-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30306592 4 + 171630274 ggct-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           121404 4 +    515838 agct-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     589634 4 -   1771730 ggct-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     225707 4 -    383796 ggct-
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17361101 4 -  18854210 -gttc
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=16691.000000
s hg38.chr6_GL000254v2_alt  1348311 3 +   4827813 gtg
s panTro5.chr6             30219198 3 + 175400573 gtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30449382 3 + 173848474 gtg
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74720589 3 + 122973662 gtg
i nomLeu3.chr1a            C 0 T 34714
s rheMac8.chr4             30541521 3 + 172585720 gca
i rheMac8.chr4             I 58770 C 0
s macNem1.NW_012012100v1     159654 3 +   1495729 gtg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     326506 3 -    863181 gtg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29360807 3 -  71996105 gtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     138318 3 -    735854 gtg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      39917 3 -   1829203 GTG
i colAng1.NW_012115577v1   C 0 I 670
s calJac3.chr4             30306596 3 + 171630274 gtg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           121408 3 +    515838 gtg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     589638 3 -   1771730 gtg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     225711 2 -    383796 g-g
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17361105 3 -  18854210 ctg
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=1776307.000000
s hg38.chr6_GL000254v2_alt  1348314 367 +   4827813 taggaaacaacactggtgggcacca-ggaattgagtacagccctccctgttctctacattgacagccagcaag-gaacaggga----cctcagtcttaa---aactg--caagaaagcacattctgcc----acctctg-tataagcctaaaggagga-------ttcaaaatgaagactcagatttgggaagcctggaacagagattccatctacatcatgcccagat-ttctgactaaggtactataaacagataaatggg-tgttttttggccaggcgtggtggtgcactcctgtaatcctaacatttga-ggagctgacacaggaggatcacttgcagccaggagtgtgagaccagcccaggtaat-acagtgagacactcgtctctaca
s panTro5.chr6             30219201 367 + 175400573 taggaaacaacactggtgggcacca-ggaattgagtacagccctccctgttctctacattgacagccagcaag-gaacaggga----cctcagtcttaa---aactg--caagaaagcgcattctgcc----acctctg-tataagcctaaaggagga-------ttcaaaatgaagactcagatttgggaagcctggaacagagattccatctacatcatgcccagat-ttctgactaaggtactataaacagataaatggg-tgttgtttggccaggcgtggtggtgcactcctgtaatcctaacatttga-ggagctgacacaggaggatcacttgcagccaggagtgtgagaccagcccaggtaat-acagtgagacactcgtctctaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30449385 367 + 173848474 taggaaacaacactggtgggcacca-ggaattgagtacagccctccctgttctctacattgacagccagcaag-gaacaggga----cctcagtcttaa---aactg--caagaaagcgcattctgcc----acctctg-tataagcctaaaggagga-------ttcaaaatgaagactcagatttgggaagcctggaacagagattccatctacatcatgcccagat-ttctgactaaggtactataaacagataaatggg-tgttgtttggccaggcgtggtggtgcactcctgtaatcctaacatttga-ggagctgacacaggaggatcacttgcagccaggagtgcgagaccagcccaggtaat-acagtgagacactcctctctaca
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30541524 363 + 172585720 taagaaaaaatgcttgtgggcacca-ggaattgagcacagccctccctgttctctacagtga----cagcgaa-gaacaggga----cctcagtcttac---aactg--ctagaaactgcgttctgcc----acctctg-taagagcctgaacgagga-------ttcaaaattaaaacacagttttgggaagcccagaacagagattttatccacatcatgcccagat-ttctgactgaggaactataaacagataaatgag-tgttgtttggccaggcgtggtagcacactcctgtaatcctaacatttga-ggagctgacacaggaggatctgttgcagccaggagtttgagactagctgagataaa-atagtgagacactcatccctaca
i rheMac8.chr4             C 0 I 1
s macNem1.NW_012012100v1     159657 367 +   1495729 taggaaagaatgctggtgggcacca-ggaattgagcgcagccctccctgttctctacattgacagccagcaag-gaataggga----cctcagtcttac---aactg--ccagaaactgcattctgcc----acctctg-tataagcctgaaggagga-------ttcaaaatgaagactcaggtttgggaagcccggaacagagattccatctacatcatgcccagat-ttctgactaaggtactataaacagataaacggg-tgttgtttggccaggcgtggtggtgcacacctgtaatcctaacatttga-ggagctgacacaggaggatcacttgcagccaggagtttgagaccagcctgggtaat-atagtaagatactcgtctctaca
i macNem1.NW_012012100v1   C 0 I 2
s cerAty1.NW_012002535v1     326509 367 -    863181 tagcaaagaacgctggtgggcacca-ggaattgagcacagccctctctgttctctacattgacagcctgcaag-gaataggga----cctcagtcttac---aactg--ctagaaactgcatcctgcc----acctctg-cataagcctaaagaagga-------ttcaaaatgaagactcaggtttgggaagcccggaacagagattccatctacatcatgctcagat-ttctgactaaggtactataaacagataaatggg-cgttgtttagccaggcgtggtggtgcacgcctgtaatcctaacatttga-ggagctgacacaggaggatcacttgcagccaggagtttgagaccagcccaggtaat-gtagtaagacactcatctctaca
i cerAty1.NW_012002535v1   C 0 I 2
s chlSab2.chr17            29360810 367 -  71996105 tagcaaagaacgctggtgggcacca-ggaattgagcgcagccctctctgttctctacattgacagcctggaag-gaacaggga----cctcagtcttac---aactg--ctagaaactgcatcctgcc----acctctg-cataagcctaaagaagga-------ttcaaaatgaagactcaggtttgggaagcccggaacagagattccatctacatcatgctcagat-ttctgactaaggaactataaacagataaacagg-tgttgtttggccaggcgtggtagcgcatgcctgtaatcccaacatttga-ggagctgacacaggaggatcacttgcagccaggagtttgagaccagcccaggtaat-atagtaagacactcgtctctaca
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012107142v1     138321 367 -    735854 tagcaaagaacgctggtgggcacca-ggaattgagcgcagccctctctgttctctacattgacagcctgcaag-gaacaggga----cctcagtcttac---aactg--ctagaaactgcatcctgcc----acctctg-cataagcctaaagaagga-------ttcaaaatgaagactcaggtttgggaagcccggaacagagattccatctacatcatgctcggat-ttctgactaaggaactataaacagataaatggg-tgttgtttagctaggcgtggtagtgcacgcctgtaatcctaacatttga-ggagctgacacaggaggatcacttgcagccaggagtttgagaccagcccgggtaat-atagtaaggcactcgtctctaca
i manLeu1.NW_012107142v1   C 0 I 2
s calJac3.chr4             30306599 367 + 171630274 tgggaaagaatgctggtgagcacca-ggaattgagcacagccctccctgttctctaccttcacggccagcaag-gaacaggaa----cctcagtcttac---aactg--ccaaaaactgcattctgcc----accgctg-tataagcctgaaggagga-------ttcaaaatgaaaacacagcttggggaagcccagagcagatatttcatccacatcttgcccagac-ttctgactaaggaactataaacagctctatggg-tgatgcttggccaggaatggtactgcatgtctgtgatcctaacatttga-ggagctgacacaggagcatcacttggagccaagagtttgagaccagtcaggataat-gtagtaagacacttgtctctaca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           121411 367 +    515838 tgggaaagaacgctggtgggcacca-ggaattgagcacagccctccctgttctctaccttgacagccagcaag-gaacagaga----cctcagtcttac---aactg--ccagaaactgcattctgcc----atctctg-tttaagcctgaaggagga-------ttcaaaatgaaaacacagatttgagaagtccagagcagagattccatccacatcttgcccagac-ttctgactaaggaactataagcagctcaatggg-tgttgttgggccaggagtggtagtgcacgcctgtaatcctaacatttga-ggagctgacataggagcatcacttgcagccaggagtttgagaccagccaggataat-gtagtgagacacttgcctctaca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     589641 366 -   1771730 tgggtaagaaccctggtgggcaaca-ggaattgaacacagccctccctgttctctaccttgacagccagcaag-gaacaagga----ccccagtcttac---aactg--ccagaaactgcattctgcc----acctctg-tataagcctgaagaagga-------ttcaaaatgaaaacacagctttgggaaatccagaacagagattccatccacaacttgcccagac-ttctgactaaggaactataaactgctcaatggg-tgttgtttggccaggggtggtattgcacgcctgtaatccttacatttga-ggagctgacacagggggatcacttgcagccaggattctgagaccagt-aggataat-gtagtgagacaattgtctctacg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     225713 365 -    383796 ttggaaagaatgctggtgggcaccagggaagtgagaacaggccctccctttctctaccttgacagccagcaag-gaataggga-----ctcagtcttacaagaactgaccagaaaactgcattctgcc----acctctgttataagcctgaaggagga-------ttcaaaa-gaaaacacagct--gggaa--tcagaacggagattcca-ccacatcttgccgagacattctgactaa--aactataaac--ttcaatgggatgtggtgtggtcaggagtggtagtgcacgccgttaatcctaacatttgagggagctgacacaggag-atcacttgcagccaggagtttgagaccagc-aggataatggtagtgagacactgtcatctaca
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17361108 222 -  18854210 tggcaaagaatgctggtgg------------------tagccctccttcctcttgaccctaacagcttgtaatcaaacagggatggaccacagtcctac---aactg--ccagaaacttaattctgcccatgggctcca-tgtaagttt-agggaggacccaaacctcaaggtgagggcacagctttgtgaaaccctgaacagaga---------------------ac------------------------------------------------------------catgcctggatttctgac---taa-ggagcagtaacaaataaa--------------------------------------------------------------
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e colAng1.NW_012115577v1      39920 670 -   1829203 I
e macFas5.chr4             29963949 33443 - 170955103 I
e nomLeu3.chr1a            74720592 34714 + 122973662 T
e gorGor5.CYUI01015528v1     163444  35 +   2037526 I

a score=1397835.000000
s hg38.chr6_GL000254v2_alt  1348681 300 +   4827813 cttt-ttttt-ttaattagctgggtgtggtggcacttgtctgcagtcctgtctactctgaagactgaggcaggaggattccttgagcccaggagtttgaggctgcagtgagccatgatcatgtgactgcacttcacgctggatgacagtttttagagactctgtctctaaaaacaaataaaTGaatacaataaataaaaacaaataaataaataCaataaatgggtgttgtttaaagccaatgtttgtgataattttttacacagtcttataaaattcatacaCAGGCTCAACAGACTAATG
s panTro5.chr6             30219568 296 + 175400573 cttt-ttttt-aaaattagctaggtgtggtggcacttgtctgcagtcctagctactctgaagactgaggcaggaggattccttgagcccaggagtttgaggctgcagtgagccatgatcatgtgactgcacttcaccctggatgacagtttttagagactctgtctctaaaaacaaat----gaatacaataaataaaaacaaataaataaatacaataaatggatgttgtttaaagccaatgtttgtgataatttgttacacagtcttataaaattcatacaCAGGCTCAACAGACTAAtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30449752 296 + 173848474 cttt-ttttt-aaaattagctgggtgtggtggcacttgtctgcagtcctagctactctgaagactgaggcaggaggattccttgagcccaggagtttgaggctgcagtgagccatgatcatgtgactgcacttcaccctggatgacagtttttagagactctgtctctaaaaacaaaT----GaatacaataaataagaacaaataaataaataCaataaatgggtgttgtttaaagccaatgtttgtgataatttgttacacagtcttataaaattcatacaCAGGCTCAACAGACTAAtg
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74685878 270 + 122973662 tttt-ttttt-aaatttacctgagcatggtggtacttgcctgtagtcctagctactccagacactgaggcagggggacctctagaggccaagagtttgaggttgcagggaaccatgatcatgcaactgcacttcaccctggataagag---agggagaccatgtctctacaaataaat---------------------------aaataaatataataaatgggtgttgtttaaagcccatgtttgtggtaatttgttatgcagtcatataaaagtcatacaCAGACTCAACAGACACATG
i nomLeu3.chr1a            T 34714 C 0
s rheMac8.chr4             30541888 263 + 172585720 tttc-ttttt---aattagttgggcgtggtgtcacttgcctgcagtcctagccattctgaagactgaggcaggaagatcccttgagcccaggagtttgaggctgcagtgagccatgatcatgtgagtctactgcaccccggatgacag---aggaagactctgtctctaaaaataaat---------------------------aaatca--acaataattggg---tgtttcaagtcaacgtttgtgataatttgttatgcaatcttataaaattcatacaCAGGCTCAACAGACTCATG
i rheMac8.chr4             I 1 I 72090
s macNem1.NW_012012100v1     160026 268 +   1495729 tttt-ttttt---aattaactgggtgtggtggcacttgtctgcagttctagctactctgaagactgaggcaggaggattctttgagcccaggagtttgaggctgccgtgagccatgatcatgtgactgcacttcaccctggatgacag---agggagactctgtctctaaaaacaaat---------------------------caatgaatacaataaatgggtgttgtttaaagccaatgtttgtgacaatttgttacacactcttataaaattcatacacaggctccacagACTCAtg
i macNem1.NW_012012100v1   I 2 C 0
s cerAty1.NW_012002535v1     326878 264 -    863181 tttt-ttttt-aaaattagctgggcgtggtggcacttgtctgtagtcctagctactctgaagactgaggcaggaggattcttcg-----aggagtttgaggctgcagtgagtcatgatcatgtgactgcacttcaccctggataacag---tgggagactctgtctctaaaaacaaat---------------------------aaatgaatacaataaatgggtg-tgtttaaagccaatgtttgtgacaatttgctacacagtcttgtaaaattcatacaGAGACTCAAAAGACTCGtg
i cerAty1.NW_012002535v1   I 2 C 0
s chlSab2.chr17            29361179 268 -  71996105 tttt-ttttt---aattagctgggcgtggtggcacttgtctgcagtcctagctactctgcagactgaggcaggaggattctttgagcccaggagtttgaggctgcagtgagccatgatcatgtgactgcacttcaccctggatgacag---tgggagactctgtctctaaaaacaaat---------------------------caatgaatacaataaatgggtgttgtttaaagctaacgtttgtgacactttgttacacactcttataaaattcatacaCAGACTCCACAGACTCAtg
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012107142v1     138690 271 -    735854 tttt-tttttttaaattagctgggcgtggtggcacttgcctgcagtcctagctactctgaagactgaggcaggaggattctttgagcccaggagtttgaggctgcagtaagtcatgatcatgtgactacacttcaccctggatgatag---tgggagactctgtctctaaaaacaaat---------------------------aaatgaatacaataaatgggtgttgtttaaagctaatgtttgtgacaatttgttacacactcttataaaattcatacaCAGGCTCCACAGACTCAtg
i manLeu1.NW_012107142v1   I 2 C 0
s calJac3.chr4             30306966 265 + 171630274 ttttattttt---aattagctggacatggtggcccttgcctgcagtcctagctgctctgaagactgaggcagtagggtcccttgagcccaggtgtttgaggctgcactgagccatgatcatgtgactgcacttcaccctggatgacag---agggagactctgtctctaaaaataaat---------------------------aaagca--atattaaa--ggtgttttttaaagctaatccttgtaataatttgttatacagtcttataaaattcatacaCAGGCTCAACAGACTCATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           121778 264 +    515838 tttt-ttttt---aattagctgggcatggtggcacttgcctgcagtcctagccgctctgaagactgaggcagtaggatcccttgagcccaggagtttgaggctgcagtgagccatgatcatgtgactgcacttcaccctggatgacag---aaggagtctctgtctctaaaaataaat---------------------------aaatca--acaataaa--gttgttttttaaagccaatgcttgtaataatttgttatacagtcttataaaattcatacacaggctcaacagactcata
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     590007 262 -   1771730 tttt-tttta---aattagctgggcgtggtggcacttgcctgcagtcctagctgctctgaagtctgaggcagtagggtctcttgagcccatgagtttgaggctgcagtgaccaatgatcatgtgactgcacttcaccctggatgacag---agggatactctgtctctaaaaataaat---------------------------aaaTCA--ACAATAAA--GGTGTTGTTTAAAGCCAATGCTTGTTATAATTTATTACACAGTCTTAT-AAATTCATACACA-GTTCAACAGACTCAtg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     226078 264 -    383796 tttgtttttt---aattagctgggcgtggtggcacttgcctgcagtcctagttactctgaaggctgagacagtagggtctcttgagcccaggagtttgaggctgcagtgagccatgatcatgtgactgcacttcaccctggatgacag---aaggagactctgtctctaaaaattaat---------------------------aaatca--acaataaa--ggtgttgtttaaagccaatgcttgtaataatttattacacagtcttataaaattcatacaCA-GTTCAACAGACTCAtg
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17361330 100 -  18854210 -----------------------------tggcccttg-----------------tttaaagac-------------------------aataatttg-----------------------------------------------------tggga-atttagtatgtaaaaatagaa---------------------------aattaa-------------------tatcaagc----------------tcaataaataggcacataacattttt--------ttaactg-------
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e colAng1.NW_012115577v1      39920 670 -   1829203 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444  35 +   2037526 I

a score=108142.000000
s hg38.chr6_GL000254v2_alt  1348981 13 +   4827813 GAATGAACTGATG
s panTro5.chr6             30219864 13 + 175400573 gaatgaactgatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30450048 13 + 173848474 gaatgaactgatg
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74686148 13 + 122973662 GAATGAATTTATA
i nomLeu3.chr1a            C 0 N 0
s rheMac8.chr4             30614241 13 + 172585720 gaatgaattgatg
i rheMac8.chr4             I 72090 C 0
s macNem1.NW_012012100v1     160294 13 +   1495729 gaatgaactgatg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     327142 13 -    863181 gaatgaattgatg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29361447 13 -  71996105 gaatgaactgatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     138961 13 -    735854 gaatgaactgatg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      40590 13 -   1829203 GAATGAACTGATG
i colAng1.NW_012115577v1   I 670 C 0
s calJac3.chr4             30307231 13 + 171630274 TAATGAATTGATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           122042 13 +    515838 gaatgaattgatg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     590269 13 -   1771730 gaatgaattgatg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     226342 13 -    383796 gactgaactgatg
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17361430 13 -  18854210 gaatgaatttatg
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=512415.000000
s hg38.chr6_GL000254v2_alt  1348994 72 +   4827813 AATTGATATATACACTAGTTACATAAAATAAAATCTTTCTGAACTTTTTCAGTGTTTTGCATTTTATAATTA
s panTro5.chr6             30219877 72 + 175400573 aattgatatatacactagttacataaaataaaatctttctgaactttttcagtgttttacattttataatta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30450061 72 + 173848474 aattgatatatacactagttacataaaataaaatctttctgaactttttcagtgttttacattttataatta
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74829072 68 + 122973662 AATTTATATACACACTAGTTACATAA---AAAAACTTTCTTAAC-TTTTCAGTGTTTTACATTTTATAATTT
i nomLeu3.chr1a            N 0 C 0
s rheMac8.chr4             30614254 72 + 172585720 aattgatatgcacactagttacataaaataaaatctttctgaacttttTCAGTGTTTTACACTTTATAATTA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     160307 67 +   1495729 aattgatatacacactagttac-----ataaaatcttccttaacttttttagtgttttacattttataattt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     327155 72 -    863181 aattgatatgcacactagttacataaaataaaatctttcttaactttttcagtgttttacattttataattt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29361460 72 -  71996105 aattgatatacacactagttacataaaataaaatctttcttaactttttcagtgttttacattttataattt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     138974 72 -    735854 aattgatatacacactagttacataaaataaaatctttcttaactttttcagtgttttacattttataattt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      40603 67 -   1829203 AATTGATATGCACACTAGTTAC-----ATAAAATATTTCTGAACTTTTTCAGTGTTTTACAATTTATAATTA
i colAng1.NW_012115577v1   C 0 I 63565
s calJac3.chr4             30307244 72 + 171630274 AACTGATATACACACTAGGTACATAAAATAAAATCTTGCTTAACGTTTTCAGTGTCTTACATTTTGTAGTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           122055 72 +    515838 aattgatatacacactagttacataaaataaaatcttgcttaacgttttcagtgtcttacattttgtaattt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     590282 72 -   1771730 aattgatacacacactagttacataaaataaaatgttgcttaacgttttcagtgtcttacattttgtaattt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     226355 71 -    383796 aattgatatacacactagttacataaaat-aaatcttgcttaacgttttcagtgttttatattttgtaattt
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17361443 71 -  18854210 aactaatatgca-attacttgcatgaaagaaaatatttcctaactcttTTAGTATGTTTAAGTGTACGATTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=401135.000000
s hg38.chr6_GL000254v2_alt  1349066 53 +   4827813 -TCTGTGATGCAATTTAATATACTCATATTTCattcattcagtcaacaaaaatt
s panTro5.chr6             30219949 53 + 175400573 -tctgtgatgcaatttaatacactcatatttcattcattcagtcaacaaaaatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30450133 53 + 173848474 -tctgtgatgcaatttaatacactcatatttcatTCATTCAGTCAACAAAAATT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74829140 53 + 122973662 -TCTGTGATACAATTTAATACACTCATATTTCattcattcagtcaacaaaaatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30614326 53 + 172585720 -TCTGAGATGCAATTTAATACACTCATATTTCattcactaagtcaacaaaaatt
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     160374 53 +   1495729 -tctgtgatgcaatttaatacactcatatttcattcattcagtcaacaaaaatt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     327227 53 -    863181 -tctgtgatgcaatttaatacactcatatttcattcattctgtcaacaaaaatt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29361532 53 -  71996105 -tctgtgatgcaatttaaTACACTCATATTTCattcattcagtcaagaaaaatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     139046 53 -    735854 -tctgtgatgcaatttaatacactcatatttcattcattcagtcaacacaaatt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     104235 53 -   1829203 -TCTGTGATGCAATTTAATACACTCATATTTCattcattcagtcaacaaaaatt
i colAng1.NW_012115577v1   I 63565 C 0
s calJac3.chr4             30307316 53 + 171630274 -TCTGTGGTCCATTTTAATATACTCATATTTTAATCATTCAGTCAACAAAAATT
i calJac3.chr4             C 0 I 35
s saiBol1.JH378341           122127 53 +    515838 -tctgtggtcctttttaatACACTCATATTTTAATCATTCCGTCAACAAAAATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     590354 53 -   1771730 -tctgtggtccattttaacacactcatatttTAAtcattcagtcaacaaaaatt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     226426 53 -    383796 -tctgtggtccattttaatacactcatatttTAATAATTCAGTCAACAAAAATT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17361514 50 -  18854210 TTAGGTGATTCAATTT----TACTTCAATCAAattccttcattcaataataatt
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=7143008.000000
s hg38.chr6_GL000254v2_alt  1349119 1156 +   4827813 aatttagtccctacaatgaaccaggtATCCCCT------------------------------------------CATATGCTCACGTGCCTGACATTCTAGAAGCTTCACAAGACCAaggtggagccactggagtgttttaggtggagaaatgacacactttgactcacattagcag------gaccactgtggAG-AGAACAGTCAC--GTAGCAGGTAACGGGAGAGTGCCAGTGTCACAATTCAGGAGTGACAGTGTGA-TGGGGACTAAGGGGAGAGGAGGGGCTGAGTGATAAGAGGGACGGAGGGAAGGGCTGGAGAAGCAGTAGGTGAGGAAAAGGAGTAGAGGGATAGAATTCAAAAGCAGCACAACTCTTAGGTTTGAACACTT------------------------------------------------------TTTTTAATGGTATTTCAATAGATCCATCTACAGAGCCTCGCAGGGTGTTACTTGCAGTTGGCCTTTAATACCTTAAGTGGGTCTGCTTAAAAACTAATTG--TTTTTATGTTAATCAGGTTTTAAAAATACTAAGTGTT-CCTAAGAAATATACACACCACTTAGATGTGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTGGTGATGGACATTGTGACTGCATCGAGCGCTTGCAACTTTGAGGTGAATGAAGTCTGTACTGACTCCTGGTTGCAACAC-------ATAGGAACACAGTG-GCTACTTTGTATTGAGGAGATGTCCTGGACT--CA--CAGAAACTCAGGGCTACGGAATAAAGGTAAATTTAAAACACCACAAGCGGGAGTCACAGATACCTTGTTTGCAAAAGTGAAACTTAGGAGCTTTGTGAGTCCTGTTGTAAT----------------------------------------------------------GCTTTTAGACAC-TTTATATATCAAGGGGCC-AAAGTCACA-----------------------------TGTTTTTACCGATTAGATTCCTGATCATTCAGGGGTTACCAAGATTCTGCTACCCACTGTAGTTAATACACAAAAAGCAAACTGGTCTCTAT-------ACTATCTCATGCACCCAGGCACAACTTTTCCAGATTTaaagaaaaagaaaaaagaaataaaagaaaaaaaCCTCTGTCTCTACACCTCCATTCCCAGGGAGAGCTCCCTCTCTGGCACCAAGCTCCCTGGGGTGAGTTTTCTTTTTGAAGAGTCCAGGGGAACAGGTAAGCAGTGGGGAAGCAGGGAGTCCATTTCAGGGACAGGAATTCCCGGATGAAAAGTGAAAGGAGAGGGACGGGGCCCA
s panTro5.chr6             30220002 1142 + 175400573 aatttagtccctacaatgaacccggtATCCCCT------------------------------------------CATATGCTCACGAGCCTGACATTCTAGAAGCTTCACAAGACCAaggtggagccactggagtgttttaggtggagaaatgacacactttgactcacattagcag------gacca---------------gtcAC--GTAGCAGGTAATGGAAGAGTGCCAGTGTCACAATTCAGGAGTGACAGTGTGA-TGGGGACTAAGGGGAGAGGAGGGGCTGAGTGATAAGAGGGATGGAGGGAAGGGCTGGAGAAGCAGTAGGTGAGGAAAAGGAGCAGAGGAATAGAATTCAAAAGCAGCACAACTCTTAGGTTTGAACACTT------------------------------------------------------TTTTTAATGGTATTTCAATAGATCCATCTACAGAGCCTCGCAGGGTGTTACTTGCAGTTGGCCTTTAATACCTTAAGTGGGTCTGCTTAAAAACTAATTG--TTTTTATGTTAATCAGGTTTTAAAAATACTAAGTGTT-CCTAAGAAATATACACACCACTTAGATGTGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTGGTGATGGGCATTGTGACTGCATCGAGCGCTTGCAACTTTGAGGTGAATAAAGTCTGTACTGACTCCTGGTTGCAACAC-------ATAGGAACACAGTG-GCTACTTTGTATTGAGGAGATGTCCTGGACT--CA--CAGAAACTCAGGGCTATGGAATAAAGATAAATTTAAAATACCACAAGCGGGAGTCACAGATACCTTGTTTGCAAAAGTGAAACTTAGGAGCTTTGTGAGTCCTGTTGTAAT----------------------------------------------------------GCTTTTAGACAC-TTTATATATCAAGGGGCC-AAAGTCACA-----------------------------TGTTTTTACCGATTAGATTCCTGATCATTCAGGGGTTACCAAGATTCTGCTACCCACTGTAGTTAATACACAAAAAGCAAACTGGTCTCTAT-------ACTATCTCATGCACCCAGGCACAACTTTTCCAGATTTaaagaaaaagaaaaaagaaataaaagaaaaaaaGCTCTGTCTCTACACCTCCATTCCCAGGGAGAGCTCCCTCTCTGGCACCAAGCTCCCTGGGGTGAGTTTTCTTCTAGAAGAGTCCAGGGGAACAGGTAAGCAGTGGGGAAGCAGGGAGTCCATTTCAGGGACAGGAATTCCCGGATGAAAAGTGAAGGGAGAGGGACGGGGCCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30450186 1142 + 173848474 AATTTAGTCCCTACAATGAACCCGGTATCCCCT------------------------------------------CATATGCTCACGAGCCTGACATTCTAGAAGCTTCACAAGACCAaggtggagccactggagtgttttaggtggagaaatgacacactttgactcacattagcag------gacca---------------gtcAC--GTAGCAGGTAATGGAAGAGTGCCAGTGTCACAATTCAGGAGTGACAGTGTGA-TGGGGACTAAGGGGAGAGGAGGGGCTGAGTGATAAGAGGGACGGAGGGAAGGGCTGGAGAAGCAGTAGGTGAGGAAAAGGAGCAGAGGAATAGAATTCAAAAGCAGCACAACTCTTAGGTTTGAACACTT------------------------------------------------------TTTTTAATGGTATTTCAATAGATCCATCTACAGAGCCTCGCAGGGTGTTACTTGCAGTTGGCCTTTAATACCTTAAGTGGGTCTGCTTAAAAACTAATTG--TTTTTATGTTAATCAGGTTTTAAAAATACTAAGTGTT-CCTAAGAAATATACACACCACTTAGATGTGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTGGTGATGGGCATTGTGACTGCATCGAGCGCTTGCAACTTTGAGGTGAATAAAGTCTGTACTGACTCCTGGTTGCAACAC-------ATAGGAACACAGTG-GCTACTTTGTATTGAGGAGATGTCCTGGACT--CA--CAGAAACTCAGGGCTATGGAATAAAGATAAATTTAAAATACCACAAGCGGGAGTCACAGATACCTTGTTTGCAAAAGTGAAACTTAGGAGCTTTGTGAGTCCTGTTGTAAT----------------------------------------------------------GCTTTTAGACAC-TTTATATATCAAGGGGCC-AAAGTCACA-----------------------------TGTTTTTACCGATTAGATTCCTGATCATTCAGGGGTTACCAAGATTCTGCTACCCACTGTAGTTAATACACAAAAAGCAAACTGGTCTCTAT-------ACTATCTCATGCACCCAGGCACAACTTTTCCAGATTTaaagaaaaagaaaaaagaaataaaagaaaaaaaGCTCTGTCTCTACACCTCCATTCCCAGGGAGAGCTCCCTCTCTGGCACCAAGCTCCCTGGGGTGAGTTTTCTTCTAGAAGAGTCCAGGGGAACAGGTAAGCAGTGGGGAAGCAGGGAGTCCATTTCAGGGACAGGAATTCCCGGATGAAAAGTGAAGGGAGAGGGACGGGGCCCA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74829193 1159 + 122973662 aatttagtccctacaatgaaccaggtATGCCCT------------------------------------------TATATGCTCACGTG-CTGACATTCTAGAAGCTTCACAAGACCGAGGTGGAGCCACTGGAGTGTTTTAGGTGGAGAAATGACACACTTTGACTCACAGGAGCAA------GACCACTGTGGAG-AGAACAGTCAC--GTAGCAGGTAATGGGAGAGTGCCAGTGTCACAATTCAGGAGTGACAGGGTGG-TGGGGACTAAAGGGAGAGGAGGGCCTGAGGGATGAGAGGGATGGTGGGAAGGGCTGGAGAAGCAGGAGGTGAGGAAAAGGAGCAGAGGGACAGAATTCAAAAGCAGCAGAATTCTTAGGTTTGAACACAT------------------------------------------------------TGTTTTATAGTATTTCAACACGTCCATCTACAGAGCCTCGCGGGGTGTTACTTGCAGTTGGCC-TTAATACCTTAAGTGGGTCTGCTTAAAAACTAATTGTTTTTTTATGTTAATCAGGTTTTAAAAATACTAAGTGTT-CCTATAAAATATACACACCACTTAGATGTGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTGGTGATGGGCATTGTGACTGCATCGAGCGCTTGCAACTTTGAGGTGAATAAAGTCTGTAATGACTCCTGGTTGCAACAT-------ATAGGAACACAGTG-GCTACTTTGTATTGAGGAGACACCCTGGACTCACA--CAGAATCTCAGGGCTATGGAATGAAGGTAAATTTAAGACACCACAAGCGGGAGTCACAGATACCTTGTTTGTGAAAGTGAAACTTAGGAGCTTTGTGAGTCCTGTTGTAAT----------------------------------------------------------GCTTTTAGACACATTTATACATCAAGGGGCC-AAAGTCACA-----------------------------TTTTTTTACCGATTAGATTCCTGACCATTCAGGGGTTACCAAGATTCTGTTACCCACTGTAGTTAATACACAAAAAGCAAACTGGTCTCTAT-------TCTATCTCATACACTCAGGCACAACTTTTCCAGATTTaaagaaaaagaaaaaagaaagaaaagaaaaaaaGCTCTGTCTCTACACCTCCATTCCCAGGGCGAGCTCCCTCTCTGGCACCAAGCTCCCTGGGGTGAGTTTTCTTCTAGTAGAGTCCAGGGGAACAGGTAAGGAGTGGGGAGGCAGGGAGTCCATTTCAGGGACAGGAATTCCGGGATGAAAAGTGAAGGCAGAGGGACCGGGCCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30614379 1128 + 172585720 aatttagtgcccatgatgaaccaggtATGCCTT------------------------------------------CATATGCTCACCTGCCTGACACTCCAGAAGTTTCACAAGACCGAGGTGGAGACACCAGAGTGTTTTAAGTGGAGAAATGACACACTCTGACTGACAGGAGCAG------GACCACTGTGAAG-ACAATAGTCAC--GTAGCAGGTCATGGGACAGTGCTAGTGTCACAATTCATGAGTGATAGTGTGG-TGGGGACTAAGGGGAGAGGAGGGTCTGAAGGATGAGAGGGACTGAGGGAAGGGCTGGAGAAGCAGGCGGTGAGGAAAAGGAGCAGAGGAA-AGAATTCCAAAGTAGCAGAATTCTTAGGTTTCAATACAT------------------------------------------------------TGTTTTATGG-ATTTTAATATATCCATCTACAGAACCTAGCAAGGTGTCCTTGGCAGTTGGCCTTTACTACCTTATGTGGGTCGGCCTAAAAACTAATTG--TTTTTATGTTAATCGGGTTTTAAAAATATTAAGTGTT-CCTATAAAATATATAGAACACGTACAAGTGGATACTTCCCGAAAACAGGCAGTGCATGAGCACTGGTGAGGGGCATTGTGACTGCATTGAACAGTTACAACTGTGAGGTGAAT--AGTCTGTACTGGCTCGTGGTTGCAACAT-------ATAATAACATAGTGTGCTACTTTGTATTGAGGAAATATCCTGGACTCACA--CAGAAACTCAGAGCCATGGAATGATGGTACATTTAAAATACGACAAGTGGGAGTCACAGATACATTATTTGCAAAAGTGAAATTTAGGAGCTTTGTGAGTCCTGTTGTAAC----------------------------------------------------------GCTTTTGGACACATTTATAAATCAAGGGGCC-AAAGTCACA------------------------------TTTTTTACCGATTAGATTCCTGATCATTCGAGGGTTACCAAGATTCTACTACCCAATATATTTAATAAACAAACAGCAAACTGGTCTCTAT-------TCTGTCTCATGCACTCAGGCGCAACTTTTCCAGATTTAA-------------------AAAAAAAAAA-------GTCTCTATACCTTCATTCCCAGAGCAAGCTCACTCTCTGGCACCAAGCTCCGTGGGGTGAGTTTTCTTCTAGAAGAGTCCAGGGGGACAGGTAAGGAGTGGGAGG-CAGGGAGTCCAGTTCAGGGATGGAGATTCCAGGATGAAAAGTGAAGGGAGAGGGACGGGGCCCA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     160427 1148 +   1495729 aatttagtccctacaatgaaccaggtgttCCCT------------------------------------------CATATGCTCACGTGCTTGGCATTCTAGAAGCTTCACAAGACCgaggtggagccactggagtgttttaggtggagaaatgacacactttgactcacattagcag------gaccactgtggAG-AGAACAGTCAC--GCAGCAGGTAATGGGAGAGTGCCAGTGTCACAATTCAGGAGTGACAGTGTGA-TGGGGACTAAGGGGAAAGGAGGGCCTGAGGGATACAAGGGATGGAGGGAAGGGCTGGGGATGCAGGAGGTGAGGAAAAGGAGCAGGGGGACAGAATTCAAAAGCAGCAGAACTCTTAGGTTTGAACACAT------------------------------------------------------TGATTTACAGTATTTCAATACATTCATCTACAGAGCCTCACAGGGTGTTACTTGCAGTTGGCCTTTAATACCTTAAGTGGATCTGCTTAGAAACTAAT----TTTTTATGTTAATCAGGTTTTAAAAATAC----TGTT-TCTATAAAATATACACACCACTTAGATGTGGATACTTCCTAAAACCTGGCAGTGCATGAGCACTGGTGATGGGCATTGTGACTGCATTTAGTGCTTGCAATTTTGAGGTGAATAAAGTCTGTACTGACTCCTGGTTGCAACAT-------ATAGGAACATAGTG-GCTACTTTGTATTGAGGAGATGTTCTGGACTCACA--CAGAAACTCAGGGCTATGGAATGAAGGTAAATTTAAAAT---ACAAGCGGGAGTCACAGATACATTGTCTGCGAAAGTGAAACTTAGGAGCTTTGTGAGTCCTGTTGTAAC----------------------------------------------------------GCTTTTAGACACATTTATATATCAAGGGGCC-AAAGTCACA------------------------------TTTTTTACCGATTAGATTTCTGATCATTCAGGGATTACCAAGATTCTGCTACTCACTGTAGTTAATAAACAAAAAGCAAACTGAACTCTAT-------TCTATCTCATGCACTCAGGCACAACCTTTCCAGATTTAAAGTAaaagataaaagaaagaaagaaaaaaTAGCCCTGTCTCTATACCTCCATTCCCAGGGCGAGCTCCCTCTCTGGCACCAAGCTCCCTGGGGTGAGTTTTCTTCTAGAAGACTCCAGGGGGACAGGTAAAGAGTGGGAGA-CAGGGAGTCCATTTCAGGGACAGGAATTCCGGGATGAAAAGTGAAGCGAGAGGGAGGGGGCCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     327280 1156 -    863181 aatttagtccctacaatgaaccaggtgTCCCCT------------------------------------------CATATGCTCACGTGCCTGGCATTCTAGAAGCTTCACAAGACCAaggtggagccactggagtgttttaggtggagaaatgacacactgtgactcacattagcag------gaccactatggAG-AGAACAGTCAC--GCAGCAGGTAATGGGAGAGTGCCAGTGTCACAATTCAGGAGTGACAGTGTGA-TGGGGACTAAGGGGAAAGGAGGGCCTGAGGGATACAAGGGATGGAGGGAAGGGCTGGGGATGCAGGAGGTGAGGAAAAGGAGCAGGGGGACAGAATTCAAAAGCAGCAGAACTCTTAGGTTTGAACACAT------------------------------------------------------TGATTTACAGTATTTCAATACATTCATCTACAGAGCCTCGTAGGGTGTTACTTGCAGTTGGCCTTTAACATCTTAAGTGGATCTGCTTAAAAACTAAT----TTTTTATGTTAATCAGGTTTTAAAAATACTAAGTGTT-CCTATAAAATATACACACCACTTAGATGTGGATACTTCCTAAAACCTGGCAGTGCATGAGCACTGGTGATGGGCATTGTGACTGCATTTAGTGCTTGCAATTTTGAGGTGAATAAAGTCTGTACTGACTCCTGGTTGCAACAT-------GTAGGAATATAGTG-GCTACTTTGTATTGAGGAGATGTTCTGGACTCACA--CAGAAACTCAGGGCTATGGAATGAAGGTAAATTTAAAATACAACAAGCGGGAGTCACAGATACATTGTCTGCGAAAGTGAAACTTAGGAGCTTTGTGAGTCCTATTGTAAT----------------------------------------------------------GCTTTTAGACACATTTATATATCAAGGGGCCAAAAGTCACA------------------------------TTTTTTATCGATTACATTCCTGATGATTCAGGGGTTACCAAGATTCTGCTACTCACTGTAGTTAATAAACAAAAAGCAAACTGATCTCTAT-------TCTATCTCATGCACTCAGGCACAACCTTTCCAGATTTaaagaaaaagataaaagaaagaaagaaaaaaTAGCCCTGTCTCTACACCTCCATTCCCAGGGCGAGCTCCCTCTCTGGCACCAAGCTCCCTGGGGTGAGTTTTCTTCTAGAAGACTCCAGGGGGACAGGTAAGGAGTGGGAGA-CAGGGAGTCCATTTCAGGGACAGGAATTCCGGGATGAAAAGTGAAGCGAGAGGGACGGGTCCCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29361585 1151 -  71996105 aatttaatccctacgatgaaccaggtATGCCCT------------------------------------------CATATGCTCAAGTGCCTGACATTCTAGAAGCTTCACAAgaacaaggtggagccactggagtgttttaggtggagaaatgacacactttgactcacattagcag------gaccactgtggAG-AGAACAGTCAC--GCAGCAGGTAATGGGAGAGTGCCAGTGTCATAATTCAGGAGTGACAGTGTGA-CGGGGACTAAGGGGAGAGGAGGGCCTGAGGGATACAAGGGATGGAGGGAAGGGCTGGGGATGCAGGAGGTGAGGAAAAGGAGCAGGGGGACAGAATTCAAAAGCAGCAGAACTCTTAGGTTTGAACACAT------------------------------------------------------TGATTTATAGTATTTCAATACATTCATCTACAGAGCCTCACAGGGTGTTACTTGCAGTTGGCCTTTAACACCTTAAGTGGATCTGCTTAAAAACTAAT----TTTTTATGTTAATCAGGTTTTAAAAATACTAAGTGTT-CCTATAAAATATACACACTACTTAGATGTGGATACTTCCTAAAACCTGCCAGTGCATGAGCACTGGTGATGGGCATTGTGACTGCATTTAGTGCTTGCAACTTTGAGGTGAATAAAGTCTGTACTGACTCCTGGTTGCAACAT-------ATAGGAACATAGTG-GCTACTTTGTATTGAGGAGATGTCCTGGACTCACA--CAGAAACTCAGGGCTATGGAATGAAGGTAAATGTAAAAT---ACAAGCAGGAGTCACAGATACATTGTTTGCGAAAGTGAAACTTAGGAGCTTTGTGAGTCCTGTTGTAAC----------------------------------------------------------ACTTTTAGACACATTTATATATCAAGGGGCC-AAAGTCACA-----------------------------TTTTTTTACCGATTAGATTCCTCATCATTCAGGGATTACCAAGATTCTGCTACCCACTGTACTTAATAAACAAAAAGCAAACTGGTCTCTAT-------TCTGTCTCATGCACTCAGGCACAACTTTTCCAGATTTaaagaaaaagaaaaaagaaaagaaaaaaaa--aGCCCTGTCTCTACACCTCCATTCCCAGGGCGAGCTCCCTCTCTGGCACCAAGCTCTCTGGGGTGAGTTTTCTTCTAGAAGACTCCAGGGGGACAGGTAAAGAGTGGGAGA-CAGGGAGTCCACTTCAGGGACAGGAATTCCGGGATGAAAAGTGAAGGGAGAGGGGCAGGGCCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     139099 1148 -    735854 aacttagtccctacaatgaaccaggtgTCCCCT------------------------------------------CATATGCTCACGTGCCTGGCATTCTAGAAGCTTCACAAGACCgaggtggagccactggagtgttttaggtggagaaatgacacactttgactcacattagcag------gaccactgtggAG-AGAACAGTCAC--GCAGCAGGTAATGGGAGAGTGCCAGTGTCATAATTCAGGAGTGACAGTGTGA-TGGGGACTAAGGGGAGAGGAGGGCCTGAGGGATACAAGGGATGGAGGGAAGGGCTGGGGATGCAGGAGGTGAGGAAAAGGAGCAGGGGGACAGAATTCAAAAGCAGCAGAACTCTTAGGTTTGAACACAT------------------------------------------------------TGATTTACAGTATTTCAATACATTCATCTACAGAGCCTCACAGGGTGTTACTTGCAGTTGGCCTTTAATACCTTAAGTGGATCTGCTTAAAAACTAAT----TTTTCATGTTAATCAGGTTTTAAAAATAC----TGTT-TCTATAAAATATACACACCACTTAGATGTGGATACTTCCTAAAACCTGGCAGTGCATGAGCACTGGTGATGGGCATTGTGACTGCATTTAGTGCTTGCAATTTTGAGGTGAATAAAGTCTGTACTGACTCCTGGTTGCAACAT-------ATAGGAACATAGTG-GCTACTTTGTATTGAGGAGATGTTCTGGACTCACA--CAGAAACTCAGAGCTATGGAATGAAGGTAAATTTAAAAT---ACAAGCGGGAGTCACAGATACATTGTCTGCGAAAGTGAAACTTAGGAGCTTTGTGAGTCCTGTTGTAAC----------------------------------------------------------GCTTTTAGACACATTTATATATCAAGGGGCC-AAAGTCACA------------------------------TTTTTTACCGATTAGATTCCTGATCATTCAGGGATTACCAAGATTCTGCTACTCACTGTAGTTAATAAACAAAAAGCAATCTGAACTCTAT-------TCTATCTCATGCACTCAGGCACAACCTTTCCAGATTTaaagaaaaagataaaagaaagaaagaaaaaaTAGCCCTGTCTCTATACCTCCATTCCCAGGGCGAGCTCCCTCTCTGGCACCAAGCTCCCTGGGGTGAGTTTTCTTCTAGAAGACTCCAGGGGGACAGGTAAAGAGTGGGAGA-CAGGGAGTCCATTTCAGGGACAGGAATTCCGGGATGAAAAGTGAAGCGAGAGGGAGGGGGCCCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     104288 1139 -   1829203 aatttagtccctacaatgaaccaggtgTCCCCT------------------------------------------CATATGCTCACGTGCCTGGCATTCTAGAAGCTTCACAAGACCgaggtggagccactggagtgttttaggtggagaaatgacacactttgactcacattagcag------gaccactgtggAG-AGAACAG------GTAGCAGGTCATGGGAGAGTGCCAGTGTCACAATTCAGGAGTGACAGTGTGATTGGGGACTAAGGGAAGAGGAGGGCCTGAGGGATACAAGGGATGGAGGGAAGGGCTGGGGATGCAGGAGGTGAGGAAAAGGAGCAGAGGGACAGAATTCAAAAGCAGCAGAACTCTTAGGTTTGAACACAT------------------------------------------------------TGATTTATAGTATTTCAATACATTCATCTACAGAGCCTCACAGGGTGTTACTTGCAGTTGGCCTTTAATACTTTAAGTGGATCTGCTTAAAAATTAATT---TTTTTATGTTAATCAGGTTTTAAAAATACTAAGTGTT-CCTATAAAATATACACACCACTTACATGTGGATACTTCCTAAAAACAGGCAGTGCATGAGCACTGGTGAGTGGCATTGTGACTACATCTAGCGCTTGCAACTTTGAGGTGAATAAAGTCTGTACTGACTCCTGGTTGCAACAT-------ATAGGAACATAGTG-GCTACTTTGTATTGAGGAGATGTCCTGGACTCACA--CAGTAACTCAGGGCTATGGAATGAAGGTAAATTTAAAATACAACAAGCAGGAGTCACAGATACATTGTTTGGGAAAGTGAAACTTAGGAGTTTTGTGAGTCCTGTTGTAAT----------------------------------------------------------GCTTTTAGACACATTTATATATCAAGGGGCC-AAAGTCACA------------------------------TTTTTTACCGATTAGATTCCTGATCATTCAGGGGTTACCAAGATTCTGCTACCCACTGTAGTTAATAAACAAAAAGCAAACTGGTCTCTAT-------TCTGTCTCATGCACTCAGGCACAACTTTTTCAGATTTAAAGGA---------------AAAGAAAAAAAAGCCCTGTCTCTACACCTCCATTCCCAGAGCGAGCTCCCTCTCTGGCACCAAGCTCCCTGAGATGAGTTGTCTTCTAGAAGACTCCAGGGGTACAGGTAAAGAGTGGGAGACCAGGGAGTCCATTTCAGGGACAGGAATTCCGGGATGAAAAGTGAAGGGAGAGGGACCGGGCCCA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           122180 1222 +    515838 AATTTAGTGCCTGAACTAAACCAAGTACGCCCT------------------------------------------CACTTGCACACATGCCTGACATTCTAGAATCTTCACAGgactgaggtgaagccactggagttttttaccaggagaaatgagacactctgactcacagtagcag------gaccactatggAG-AGAACAGTCAT--GTAGCAGGTAATGGGACAGTGCTAGAGTCACTATTCAGGATTGACAGGGTGG-TGGGGACTAA-GGGAGAGGAGGGCCTGATGGATGAGAGGGATGGAGGGAAGGGCTGGAGAAGCAGGAGGTGAGGAAAAGGAGCAGAGGGAAAGAATTCAAAAGCAGCAGAATTCTTAAGTTTAAACACAT------------------------------------------------------TGTTTTATAGATTTTTAATACATCCATCTACAGAGCCTAGCAGGGTTTTCTTTGCAGTTGGGC-TTAATACCTTATGTAGGTCTGCCTAAAAACTAATTGT-TTCTTATGTTTATAAGGTTTAGAAAATACTAAGTGTT--CTATAAAATAAACACACCACTTAGACGTGGACAATTCCTAAAAACAGGCAGTGCATGAGCACTGGTGAGGGGGCTTGTGACTGCATTGAACACTTGCGGCTGTGAGGTGAATGAAGTCTGTTCCGGTTCCTGGTTGCAACAT-------ACAGTAACACAGTGTGCTACTTGGTATTGAGGAGATGTCCTGGACTCACA--CAGAAACTCAGGGCTGTGGAATGAAGGTATATTTAAAATACAACAAGCGGGAGTCGCAGATACATTGTCTGGGAAAGTGACAC--AGGAGCTTTATGAGTCCTGTTGCAATGCTtttatttatttatttgtttgtttgtttatttTTTCTTGCCTTGTCTCAGATAAGAGCTTTTAGACACATTTATATATCAACGGGCC-AAAGTCACAttttttttttttttttttttttttttttttttttttACCGATTACGTTCCCGATCATTCAGAGTTTATCAAGATTCTGCTGCTCACTGCAGTTAATAAACAAAAAGCAAACTGGTCTCTAT-------GCTATCTCATGCTCTCAGGCAAAATTTTTCCAGATTTGAAGAAACAAA-------------------CAAATCCTGTCTCTACACCTCCATTCCCAGGGCGAGCTCACTCTCTGGCACCAAGCTCCACGGGGTGAGTTTTCTTCTAGCAGAGTCCAGGGGGACAGGTGAGGAGTGGGAGG-CAGGGAGTCCAGTTCAGGGACGGGGATAT-GGGATGAAAAGTGAAGGGAGAGGGACAGGGCCCG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     590407 1191 -   1771730 aatttagtgcctacactaagccaggtATGCCCT------------------------------------------CACTTGCACACGTGCCTGATGTTCTAGAAGCTTCACAAGACTGAGGTGGAGCCACTGGAGTTTTTTACAGGGAGAAATGAGACA--CTGACTCACAGTAGCAA------GACCACTGTGGAG-AGAACAGTCAC--ATAGCAGGTAATGGGACAGTGCTAGAGTCACTATTCAGGAGTGACAGGGTTG-TGGGGCCCAAGGGGAGAGGAGGGCCTGAGGGATGAGAGGGATTGAGGGAAGGGCTGGAGAAGCAGGAGATGAGGAGAAGGAGCAGAGGGAAGGAATTCAAAAGTAGCAGAATTCTTAGTTTTAAACACAT------------------------------------------------------TGTTTTATAGATTTTTAATACATCCATCTACAGAGCCTAGCAGGGTGTTCTTTGCAGTTGGGCTTTAATACCTTATGTAGGTCTGCCTAAAAACTAATCGT-TTCTTATGTTAATCAGGTTTAAAAAATACTAAGTGTT-CCTATAAAATAAACACCCCACTTAGATGTGGACATTTCCTAAAAACAGGCAGCGCATGAGCACTGGTGAGGGGCCTTGTGACTGCATTGAGCACTTGCGACTGTGAGGTGAATGAAGTCTGTACTGGCTCCTGGTTGCAACAT-------ACAGTAACACAGTGTG-TACTTTGTACTGAGGAGATGTCCTGGACTCACA--CAGAAACTCAGGGCTGTGGAGTGAAGGTAAATTTAAAATACAACAAGCAGGAGTCACAGATACATTGTCTGGGAAGGTGAAAC--AGGAGGCTTATGAGTCCGGTTGCAATGCTTTGATTTATTTATTTATTTTTAAAAT--TTTTTTCTTGCCTTGTCTCAGATGAGAGCTTTTAGACACATTTATATATCAACGGGCC-AAAGTCACA------------------------------TTTTTTACCGATTAGATTCCTAATGATTCAGGGGTTACCAAGATTCTGCTACCCACTGTAGTTAATAAACAAAAAGCAAACTGGTCTCTAT-------GGTATCTCATGCTCTCAGGCAAAATTCTTCCAGATTTGGAAAAAAAAA-------------------AAAGCCCTGTCTCTATACCTCCATTCCCAGGGCGAGCTCACTCTCTGGTACCAAGCTTCCTGGGGTGAGTTTTCTTCTAGAAGAGTCCAGGGGGACAGGTAAGGAGTGGGAAG-TAGGGAGTCCAGTTCAGGGACGGGGATGCAGGGATGAAAAGTGAAGGGAGAGGGACGGGGCCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     226479 1234 -    383796 AATTTAGTGCCTACACTAAACCAGGTACGCCCT------------------------------------------CGCTTGCACACATGCCTGATGTTCTAGAAGCTTCACAAgactgaggtggagccactggagttttttacagggagaaatgacacactctgactcacagtagtag------gaccactgtggAG-AGAACAGTCAC--ATAGCAGGTAATGGGACAGTGCTAGAGCCACTATTCAGGAGTGACAAGGTGG-TGGGGCCTAAGGGGAGAGGAAGGCCTTAGGGATGAGAGCAACAGAGGGAAGGGCTGGAGAAGCAGGAGGTGAGTAAAAGGAGCAGAAGGAAAGAATTCAAAAGCAGCAGAATTCTTAGGTTTAAACACATTGTTTTATAGATTTTTTTTCTttctggatattagccctttgtcagatgggtagatgttttatagattttTAATACATCCATCTAGAGAGTCTCTCAGGGTGTTCTTTGCAGTGGGTT-TTAATATCTTATGTACGTCTGCCTAA----TAACTGT-TTCTTATGTTAATCAGGTTTAAAAAAGACTAAGTGTT-CCTATAAAATAAACACCCCACTTAGATGTGGACACTTCCT-AAAACAGGCAGTGCATGAGCACTGGTGAGGGGCATTGTGACTGCATTGAACACTTGCGACTGTGAGGTGAATGAAGTCTGTACTGGCTCCCGGTTGCAACATGTTGCACACAGTGATACAGTGTGCTACTTTGTACTGAGGAGATGTCCTGGACTCACA--CAGAAACTCAGGGCTGTGGAATCAAGGTATTTTTAAAATGCAACAAGTGGGAGTCACAGATACATTTTCTGGGAAAGTGAATC--AGGAGCTTTATGAGTCCTGTTGCAATGCttttatttttttatattt-----------ttttttcttGCCTTGTCTCACATGAGAGCTTTTAGACACATTTATATATCAACGGGCC-AAAGTCACA------------------------------GTTTTTATCGATTAG--------------------TACCAAGATTCTTCTATCCACTGTAGTTAATAAACGAAAAGCAAACTGGTCTCTGT-------GCTATCTCATGCACTCAGGCAAAATTTTTCCAGATTTGAAGGaaaaaaaaaaa-----aaagaaaagaaaaCCCTGTCTCTACACCTCCATTCCCAGGGCGAGCTCACTCTCTGGCAGCAAGCTTCCTGGGGTGAATTTTCTTCTAGAAGAGTCCAGGGGAACAGGTAAGGAGTGGGAGG-CAGGCAGTTCAGTTCAGTGACCAGGATGCAGGGATGACAAGTGAAGGGAGAGGGACGGGGCCCA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17361564 1159 -  18854210 aaattagt-cctattatgtactaagtatgcttttccatgctggggatacagttttgacccaacaagcccaaagcccctgtgctcatgtgccttaccttccagaggCTTTGTAGgaatgagatcaacccattggagcattgtaactaaagaaatgacaaaaactgacttTCACTAGAAGACTGGTGACCACCGTGAAGTAGAAAAGACCTGGGCAGCAGGTGAAGGGACAAGGCTGGCACCACATAGCAGGAGTGAGAG-GTGG-T-GGGACTAAGGGGAGAAG-GGGTCTGAGGGATGAGAGGGACAGAGAGAAGGGCTGGAGAAGCAGGAGGTGAGGAACAGGAGCAGAGGGAAAGAGTTGTAAAGCAGCTGAATTCT--GATTTACATACAG------------------------------------------------------TGTTTTATAGATTTTTAA----------TACAGAGCCTAGCAGGGTGCTCTTTGCATTTGGTAATTAACACATT-TGCGGGGCTGCCTAAGAGTGAATTGCCTCCTAATGTGGCTCAGATTAAAAAAGTACTAAGCGTCCCCTCCAAAATATGCACACAGCTCAGATGCGAATAATTCATAAAAAGAGTCAATGCATGAGCACTGGAGAAGGGCATGTTGACTGT-TGGAGCACATGCAGCTTTGAAGTGATTAAAGTCC-TAC-AGCTCCTAGCTGAAATAC-------ACAGTAACA------AATTCTTTGTGT----GAGATGTACTGAATTCACAAGTACAGACTAAGGACTATGGAATGAAAATAATTTTAAACTACAAC--TCAAGAGTCCAAGACACATAGTCCAGAAAAGTAAAACTCAGGAGCTTTA--AGTCTAACTGTAAC----------------------------------------------------------GAGTTCCAACACATTGTTCTATCAAGGTGCC-AACATCACA------------------------------TGTGTTACAGATTAAATTCCTGATCATTCAGGGGTTACCTAGATTGTGCTATCCACTCAAGTTAATAAGCGAGCAGGAAACTGGTCTCTATGAGAGTGTCTGTCAGGTGTGTTCAGACAGAACTTCTCCAGGTTTATAGAGAAA-----------------------ACCACCATCTCTACACCTCCAGTCCCAGGGCAAGTTCA--CTCTGGCATCAAGTTCCCTGGAGTGAGTTTTCTTGTAGAGGAGTCTAGGCTGGGAGGAAAGGATTAGGAAG-CAAGGCGTCTAGTTCAATGAGAGGAAT-CTGTGAGGAAAAGAAAAGGAAGAAG--CTGGACCCA
i otoGar3.GL873550         C 0 I 756
e mm10.chr17               58009284 6253 -  94987271 I
e calJac3.chr4             30307369   35 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444   35 +   2037526 I

a score=138725.000000
s hg38.chr6_GL000254v2_alt  1350275 24 +   4827813 AGCTGAGGGTTTCTTCCTGGTTTC
s panTro5.chr6             30221144 24 + 175400573 TGACGAGGGTTTCTTCCTGGTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30451328 24 + 173848474 TGACGAGGGTTTCTTCCTCGTTTC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74830352 24 + 122973662 AGCCGAGGGTTTCTTCCTGGTTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30615507 24 + 172585720 TGCCCAGGGGTTCTCCCTGGTTTC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     161575 24 +   1495729 AGCCGAGGGCTTCTTCCCGGTTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     328436 24 -    863181 AGCCGAGGGTTTCTTCCCGGTTTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29362736 24 -  71996105 AGCCGAGGGTTTCTTCCCGGTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     140247 24 -    735854 AGCCGAGGGCTTCTTCCCGGTTTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     105427 24 -   1829203 AGCCGAGGGTTTCTTCCCGGTTTC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           123402 24 +    515838 TGCCGAGGGTTTCTCTCTGGTTTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     591598 24 -   1771730 TGCTGAGGGTTTCTTCCTGGTTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     227713 24 -    383796 TGCTGAGGGTTTCCCTCTGGTTTC
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e otoGar3.GL873550         17362723 756 -  18854210 I
e calJac3.chr4             30307369 35 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=118171.000000
s hg38.chr6_GL000254v2_alt  1350299 17 +   4827813 TCGGACAGCTCCTGGAC
s panTro5.chr6             30221168 17 + 175400573 TCGGACAGCTCCTGGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30451352 17 + 173848474 TCGGACAGCTCCTGGAC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74830376 17 + 122973662 TCAGACAGCTCCTGGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30615531 17 + 172585720 TCAGACAGCTCCTGGGC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     161599 17 +   1495729 TCAGACAGCTCCTGGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     328460 17 -    863181 TCAGACAGTTCCTGGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29362760 17 -  71996105 TCAGACAGCTTCTGGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     140271 17 -    735854 TCAGACAGCTCCTGGGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     105451 17 -   1829203 TCAGACAGCTTCTGGGC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           123426 16 +    515838 TCAG-CAGCTCCTGGGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     591622 16 -   1771730 TCAG-CAGCTCCTGGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     227737 16 -    383796 TCAG-CAGCTCCTGGGC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17363479 17 -  18854210 TCAGACAGCTCCTGGAC
i otoGar3.GL873550         I 756 C 0
e mm10.chr17               58009284 6253 -  94987271 I
e calJac3.chr4             30307369 35 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=2936249.000000
s hg38.chr6_GL000254v2_alt  1350316 442 +   4827813 CAAGACTCAGGG---AA-CA---TTGAGACAGAGCGTTTGTCACAGGAGGAGCGGGGTCAGGGCGAAGTCCCAGAGCCCCAGGCATGG-CTCTCAGGG-TCTCAGGCCCCGAAGGCGGTGCATGGGCTGGGGAGGTGCAGCATT---GGGGA-TTC-CCCATCTCCGCAGAGTTTCTCTTCTCCCTCTCCCAGCCTGCGACGG-------GTCCTTCTTCCTGGACACTCACGACGCGGACCCAGTTCTCACTCCCACTGAGTGTCGGGTTTCTAGGGAAGCCAATCAGCGTCG-CGCGG-CCC-------------CGGTTCT--AAAGTC----CCCACGCACCCACCGGGACTCGG-------AGTCTCCCCAGACGCCGACGATGG-GGTC-ATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCGGGGACCCTGGCCCTGGCCGAGACCTGGGCG------------------GGTGAGTGCGGGGTCAGGAGGGAAACGGCCTCTG
s panTro5.chr6             30221185 442 + 175400573 CAAGACTCAGGG---AA-CA---TTGAGACAGAGCGTTTGTCACAGGAGGAGCGGGGTCAGGGCGAAGTCCCAGAGCCCCAGGCATGG-CTCTCAGGG-TCTCAGGCCCCGAAGGCGGTGCATGGGCTGGGGAGGTGCAGCGTT---GGGGA-TTC-CCCATCTCCGCAGAGTTTCTCTTCTCCCTCTCCCAGCCTGCGACGG-------GTCCTTCTTCCTGGACACTCACGACGCGGACCCAGTTCTCTCTCCCACTGAGTGTCGGGTTTCTAGGGAAGCCAATCAGCGTCG-CGCGG-CCC-------------CGGTTCT--AAAGTC----CCCACGCACCCACCGGGACTCGG-------AGTCTCCCCAGACGCCGACGATGG-GGTC-ATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCGGGGACCCTGGCCCTGGCCGAGACCTGGGCG------------------GGTGAGTGCGGGGTCAGGAGGGAAACGGCTTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30451369 442 + 173848474 CAAGACTCAGGG---AA-CA---TTGAGACAGAGCGTTTGTCACAGGAGGAGCGGGGTCAGGGCGAAGTCCCAGAGCCCCAGGCATGG-CTCTCAGGG-TCTCAGGCCCCGAAGGCGGTGCATGGGCTGGGGAGGTGCAGCGTT---GGGGA-TTC-CCCATCTCCGCAGAGTTTCTCTTCTCCCTCTCCCAGCCTGCGACGG-------GTCCTTCTTCCTGGACACTCACGACGCGGACCCAGTTCTCACTCCCACTGAGTGTCGGGTTTCTAGGGAAGCCAATCAGCGTCG-CGCGG-CCC-------------CGGTTCT--AAAGTC----CCCACGCACCCACCGGGACTCGG-------AGTCTCCCCAGACGCCGACGATGG-GGTC-ATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCGGGGACCCTGGCCCTGGCCGAGACCTGGGCG------------------GGTGAGTGCGGGGTCAGGAGGGAAACGGCTTCTG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74830393 440 + 122973662 CAAGACTCGGGGA--AA-CA---TTGAGACAGAGCGCTTGGCACAGGAGGAGCTGGGTCAGGGCGAAGTCCCAGGGCCCCAGGCGTGG-CTCTCAGGG-TCTCAGGCCCCGAAGGCGGTGCATGGGCTGGGGAGGTGCAGCGTT---GGGGA-TTC-CTAATCTCTGC--AGTTTCTCTTCTCCCTCTCCCAACCTGCGACGG-------GTCCTTCTTCCTGGACACTCACGACGCGGATCCAGTTCTCACTCCCACTGAGAGTCGGGTTTCTAGAGAAGCCAATCAGCGTCG-CGCGG-CCC-------------C-GTTCT--AAAGTC----CCCACGCAACCACCGGGACTCGG-------AGTCTCCCCAGACGCCAAGGATGG-GGTC-ATGTCGCCCCGAACCCTCCTCCTGCTGCTCTCGGGGACCCTGGCCCTGGCCGAGACCTGGGCA------------------GGTGAGTGCGGGGTCAAGAGGGAAACGGCCTCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30615548 440 + 172585720 CAAGACTCAGAGA--GA-CA---TTGAGACAGAGCGCTTGGCACAGGAGGAGCGGGGTCAGGGCAAAGTCCCAGGGCCCCAGGTGTGG-CTCTCAGGG-TCTCAGGCCCCGAAGGCGGTGTATGGATTGGGGAGTGCCAGCGTT---GGGGA-TTC-CCCATCTCCGC--AGTTTCTCTTCT---TCTGACAACCTGCGTCGT-------GTCCTTCTTCCTGGATACTCACGACGCGGACCCCGTTCTCACTCCCATTGGGTGTCGGGTTTCTAGAGACGCCAATCAGCGTCGCCGCAG-TCC-------------CGGTTCT--AAAGTC----CCCACTCACCCACCAGGACTCAG-------ATTCTCCGCAGACGCCCAGGATGGCGGTC-ATGGCGCCCCGAACCCTCCTCCTGGTGCTCTCCGGGGCCCTGGCCCTGACCCAGACCTGGGCG------------------GGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCTG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     161616 443 +   1495729 CAAGACTCAGGGA--GA-CA---TTGAGACAGAGCGCTTGGCACAAGAGGAGTGGGGTCAGGGCGAAGTCCCAGGGCCCCAGGCGTGG-TTCTCAGAG-TCTCAGGTCCTGAAGGCGGTGTATGGGCTGGGGGGTCCCAGGGTT---GGGGA-TTC-CTAATCTCCGCAGAGCTTCTCTTCTCCCTCTCACAACCTGCGACGG-------GTCCTTCTTCCTGGACACTCATGACGAGGACCCAGTTCTCACTCCCACTGAGTGTCGGGTTGCTAGAGAAGCCAATCAGCGTCG-CGCCG-CCC-------------CGGTTCT--AAAGTC----CACACGCACCCACCGGGACTCAG-------AGTCTTCCCAGACGCCGACGATGG-GGTC-ATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCGGGGACCTTGGCCCTGACCGAGACCAAGGCG------------------GGTGAGTGCGGGGTCAGGAGGGAAACCGCCTCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     328477 441 -    863181 CAAGACTCAAGGA--GA-CA---TTGAGACAGAGCGCTTGGCACAAGAGGAGCGGGGTCAGGGCGAAGTCCCAGGGCCCCAGGCGTGG-TTCT--GAG-TCTCAGGCCCCGAAGGCGGTGTAAGGGCTGGGGAGTCCCAGGGTT---GGGGA-TTC-CTAATCTCCGCAGAGTTTCTCTTCTCCCTCTCCCAACCTGTGACGG-------GTCCTTCTTCCTGGACACTCATGACGCGGACCCAGTTCTCACTCCCGCTGAGTGTCGGGTTTCTAGAGAAGCCAATCAGCCTCG-CGCGG-CCC-------------CGGTTCT--AAAGTC----CACACGCACCCACCGGGACTTGG-------AGTCTTCCCAGACGCCGACGATAG-GGTC-ATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCGGGAACCTTGGCCCTGACCGAGACCAAGGCG------------------GGTGAGTGCGGGGTCAGGAGGGAAACGGCCTCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29362777 444 -  71996105 CAAGACTCAGGGA--AA-CA---GTGAGACAGAGCGCTTGGCACAAGAGGAGCGGGGTCAGGGCGAAGTCCCAGGACCCCAAGCGTGG-TTCTCAGAG-TCTCAGGCCCCGAAGGCGGTGTATGGGCTAGGGGGTCCCAGGGTT---GGGGA-TTC-CTAATCTCCAC--AGTTTCTCTTTTCCCTCTCACAACCTGCAACGG-------GTCCTTCTTCCTGGACACTCACCACGCGGACCCAGTTCTTACTCCCACTGGGCGTCGGGTTGCTAGAGAAGCCCATCAGCGTCG-CGCCG-ACC-------------CGGTTCT--AAAGTCCACACACACCCACCCACCTGGACTCGG-------AGTCTTCCCAGACGCCGACGAT-G-GGTC-GTGGCGCCCCGAACCCTCCTCCTGCTGCTCTCGGGGACCCTGGCCCTGACCAAGACCTGGGCC------------------GGTGAGTGCCAGGTCAGGAGGGAAACGGCCTCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     140288 445 -    735854 CAAGACTCAGGGA--GA-CA---TTGAGACAGAGCGCTTGGCACAAGAGGAGTGGGGTCAGGGCGAAGTCCCAGGGCCCCAGGCGTGG-TTCTCAGAG-TCTCAGGTCCCGAAGGCGGTGTATGGGCTGGGGGGTCCCAGGGTT---GGGGA-TTC-CTAATCTCCGCAGAGTTTCTCTTCTCCCTCTCACAACCTGCGACGG-------GTCCTTCTTCCTGGACACTCACGACGAGGACCCAGTTCTCACTCCCACTGAGTGTCAGGTTGCTAGAGAAGCCAATCAGCGTCG-CGCCG-CCC-------------CGGTTCT--AAAGTC--CACACATCCTCCCACCGGGACTCAG-------AGTCTTCCTAGACGCCGACGATGG-GGTC-ATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCGGGGACCTTGGCCCTGACCGAGACCAAGGCG------------------GGTGAGTGCGGGGTCAGGAGGGAAACCGCCTCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     105468 441 -   1829203 CAAGACTCAGGGA--GA-CA---TTGAGACAGAGCGCTTGGCACAAGAGGAGCGGGGTCAGGGCGAAGTCCCAGGGCCCTAGGCGTGG-TTCT--GAG-TCTCAGGCCCCGAAGGTGGTGGATGGGCTGGGGAGTCCCAGCGTT---GGGGA-TTC-CTAATCTCCGCAGAGTTTCTCTTCTCCCTCTCCCAACTTGCGACGG-------GTCCCTCTTCCTGGACACTCACGACGCGGACCCAGTTCTCACTCCCACTGAGTGTCGGGTTGCTAGAGAAGACAATCAGCGTCG-CGCGG-CCC-------------GGGTTCT--AAAGTC----CACACGCACCCACCTGGACTCGA-------AGTCTCCCCAAATGCCGACAATGG-GGTC-ATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCGGGGACCCTGGCCCTGACCAAGACCTGGGCC------------------GGTGAGTGCCGGGTCAGGAGGGAAACGGCCTCTG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           123442 440 +    515838 CAAGACTCAGGGA--GA-CA---TTGAGACAGAGCGCTTGGCACAGGAGGAGCGGGGTCAGGGCGAAGTCCCAGGG-CCCAGGCGTGG-CTCTCAGGG-TCTCAGGTGCGGAAGGCGGTGTGTGGATT-GGGAGGCGCAGCGTT---GCGGA-TTC-CCCGTCTCCGCTGAGTTTCTCTTC---CTCTCCCAACCTGTGTCGG-------GTCCTTCTTCCTGGATACTCATGACGCGGACCCAGTTCCCACTCCCATTGGGTGCCGGGTTTCTAGAGAAGCCAATCAGCATCGCCGCGG-TCC-------------CGGTTCT--GAAGTC----CCCAGTCACCCACCCGGACTCAG-------AGTCTCCTCAGACGCCGAGGATGGCGGTC-ATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCGGGGGCCCTGGCCCTGACCCAGACCCGGGCG------------------GGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     591638 423 -   1771730 CAAGACTCAGGGA--GA-CA---TTGAGACAGAGCGCTTGGCACAGGAGGAGCGGGGTCAGGGCGAAGTCCCAGGG-CTCAGGCGAGG-CTCTCAGGG-TCTCAGGCCCCGAAGGCGGTGTATAGATTGGGGAGACCCAGCGTT---GGGGA-TTC-CCCATCTCCAC--AGTTTCTCTTC---CTCTCCCAACCGGTGTCGG-------GTCCTTCTTCCTGGATACTCACGACGGGGACCCAGTTCCCACTCCCATTGGGTGCCGGGTTTCTAGAGAAGCCAGTCAGCGTCGCCGCGG-TCC-------------AGGTACT--AAGGTC----CCCAGTCACCCACCCGGACTCAG-------ATTATCCTCAGAGGCCGAGGATGGCGGTC-ATGGCACCCCGAACCCTCCTCCTGCTGCTCTCGGTCGCCCTGGCCCTGACCGAGACCTGGGCG------------------GGTGAGT----------------AACGGCCTCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     227753 442 -    383796 CAAGACTCAGGGA--GA-CA---TTGAGACAGAACGCTTGGCACAGGAGGAGCGGGGTCAGGGCGAAGTCCCAGGGCCCCAGACGTGG-CTCTCAGGG-TCTCAGGCGCGGAAGGCGGTGTTTGGATTGCGGAGGCGCAGGTTT---GGGGA-TTC-CCCATCTCCGCAGAGTTTCTCTTC---CTCTCGCAACCTGTGTCGG-------GTCCTTCTTCCTGGATACTCACGACGCGGACCCAGTTCTCACTCCCATTGGGTGCCGGGTTTCTAGAGACTCCAATCAGCGTCGCCGCGG-TCC-------------CGGCTAT--AAAGTC----CCCAGTCACCCACCCGGAGCCAG-------AGTCTCCCCAGACGCCGAGGATGGCTGTT-ATGGCGCCCCGAACCCTCCTCCTGCTGCTCTCGGGGGCCCTGTTCCTGACCGAGACCCGGGCG------------------GGTGAGTGCGGGGTCGGGAGGAAAACGGCCTCTG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17363496 446 -  18854210 CAGGACTCAGGAGTTGG-CG----TGAGGAACAGCGGTCAGTGCAATAGCAGAGGGGTCAGGGGAAAGTCCCAGGT-TCCGGGCATGGAATCTCAGGGATCTCAG--TCTGAAGGCGGTAGCTGGGATGGGGAAGCTCAGGTCTCCCGGCAA-TTCACTTCTCCTCCCAGCGATTCACTTC---TCCTCCCAGCTCCTGTCAG-------GTTCTTCTTCTTGGATACTGCTGACGCAGGCCCGGTTCTCATTCTCATTGCGTGT-GGGTTTCCAGAAAAGCCAATCATAGTCACCGGAGTTCC-------------CGGTCAT--TAAGTT----TCCATCAAGCTCCCCGGACTCAG-------CGTCTCTTCAGATTCCGAGGATGGGGGTC-GCGGCTCCCAGAATCCTCCTCCTGCTGCTCTTGGGGGCCCTAGTCCTGACCGAGACCTGTGCG------------------GGTGTGTGCGGAGTGGGGAATGAAACGGCCTCTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58015537 461 -  94987271 CAGGACTCAGAGA--GAGCAGATGTGTCAAAGAGCACCAAGTACAGGAGGAAGTGGGCT---------TTCCTAAGTCCCCAGTGTGA--------GG-TTTTTGTCTTCAA----GGTGTCTGTGGTGGGGAAGCCATGGGTT---GGGAAGTCC-CTTGTCCCTTCTGAATTCTCTCTGGGTAGCTTACAAACTGTGTCAGTTGCGCTGTTCTTCCATCTGGAC--------------CCATGTTCTCACTCCCAGTGCATGTAGGAATTTTAGAGAA-CTATTCACAGTCACTGTGG-TTCTTCCCACAACCCACAGTGCTAGAAACTC----CACAGAGAGGAACAAAGTCTCAGTCCCTCCAGACTTTCCACACATCAAGGATGG-GGCCTACAGCACCCTGTGCCACCCTCCTGCTGCTCTCAGCATTCCTGGCTCTGATCCAGACCAAGAACCAGAGCTTTGCTGGTTATGGTTAGTGT-GGGTCTGGAGGGAAACAGCTCCGG
i mm10.chr17               I 6253 I 97
e calJac3.chr4             30307369  35 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444  35 +   2037526 I

a score=26273.000000
s hg38.chr6_GL000254v2_alt  1350758 10 +   4827813 C-CGT------GAGGAG
s panTro5.chr6             30221627 10 + 175400573 C-CGT------GAGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30451811 10 + 173848474 C-CGT------GAGGAG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74830833 10 + 122973662 C-TGG------GAGGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30615988 10 + 172585720 C-GGG------GAGCAG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     162059 16 +   1495729 C-GGGAGGAGAGAGGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     328918 16 -    863181 C-GGGAGAAGAGAGGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29363221 17 -  71996105 CGGGGAGGAGGGAGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     140733 16 -    735854 C-AGGAGGAGAGAGGAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     105909 10 -   1829203 C-GGG------GAGGAG
i colAng1.NW_012115577v1   C 0 T 63547
s saiBol1.JH378341           123882 10 +    515838 C-GGG------GAGGAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     592061 10 -   1771730 C-GGG------GAGGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     228195 10 -    383796 A-GGG------GAGGAG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17363942  9 -  18854210 A-GGG------GAGGG-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58015998 97 -  94987271 I
e calJac3.chr4             30307369 35 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=111648.000000
s hg38.chr6_GL000254v2_alt  1350768 27 +   4827813 CGAAAGGTCCACCTGGCTGGGGCGCAG
s panTro5.chr6             30221637 27 + 175400573 CGACAGGTCCGTCTGGCTGGGGCGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30451821 27 + 173848474 CGACAGGTCCGTCTGGCTGGGGCGCAG
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74830843 27 + 122973662 CGAAAGGCCCGCCCGGCCAGGGCGCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30615998 26 + 172585720 CGACGGGACCGC-AGGCGGGGGCGCAG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     162075 27 +   1495729 CAAGGCGCCCTCTGGGCAGGGGCGCAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     328934 27 -    863181 CAAAGGGCCCTCCCGGCGGGGGCGCAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29363238 19 -  71996105 C----CGCCC----GGCGAGGGCGCGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     140749 27 -    735854 CAAGGCGCCCTCTGGGCAGGGGCGCAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      42372 27 -   1829203 CGAGGGGCCCGCCTGGCTGGGGCGCAG
i colAng1.NW_012115577v1   T 63547 C 0
s saiBol1.JH378341           123892 26 +    515838 CGAGGGG-CCGCCAGGCGGGTGCTCAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     592071 27 -   1771730 AGAGTGGCCCGCCCGGCGGGGACTCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     228205 27 -    383796 CGAGGGGCCCGCCCGGCGGGGGCGCAG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17363951 27 -  18854210 CGAGGGGACCACCTGGCTGGGAAGCAG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58015998 97 -  94987271 I
e calJac3.chr4             30307369 35 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=1452297.000000
s hg38.chr6_GL000254v2_alt  1350795 205 +   4827813 GACCCGGGGAGCCG--------CGCCGGGAGGAGGGTCGGGCGGGTCTCAGCCCCTCCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCAGCACC---GCCGTTTCCTGGCCGGGCCGCGGGGAGCCCAGCTTCATTGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGGTCGACAGTGACGCCGTGAGTCTGAGGATGAAGACGCGGGC
s panTro5.chr6             30221664 205 + 175400573 GACCCGGGGAGCCG--------CGCCGGGAGGAGGGTCGGGCGGGTCTCAGCCCCTCCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCAGCACC---GCCGTTTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATTGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGGTCGACAGTGACGCCGTGAGTCTGAAGATGAAGACGCGGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30451848 205 + 173848474 GACCCGGGGAGCCG--------CGCCGGGAGGAGGGTCGGGCGGGTCTCAGCCCCTCCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCAGCACC---GCCGTTTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATTGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGGTCGACAGTGACGCCGTGAGTCTGAAGATGAAGACGCGGGC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74830870 205 + 122973662 GACCCGCGGAGCCG--------CGCGGGGAGGAGGGTCGGGCGGGTCTCAGCCTCTCCTCGCCCCCAGGCTCCCACTCCTTGAGGTATTTCAGCACC---GCCGTTTCCCGGCCGGGCCGCGGGGAGCCCCGCTTCATCGCCGTGGGCTACCTGGAGGACACGCAGTTCGTGCGGTTCGACAGTGACGCCGCGAGTCCGAGGATGAAGACGCGGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30616024 205 + 172585720 GACCCGGGGAGCCG--------CGCGGGGAGGAGGGTCGGGCGGGTCTCAGCCTCTCCTCGCCCCCAGGCTCGCACTCCTTGAGATATTTCTACACC---TCCATGTCCCGGCCCGGCCGCGGGCAGCCCCGCTTCATCTCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGAGAGTCCGAGAGAGGAGCCGCGGGC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     162102 197 +   1495729 GACCTGGGGAGCCG--------CGCGGGGAGGAGGGTCGGGCGGGTCTCAGCCTCTCCGCGCCCCCAGGCTCCCACTCCTTGAGGTATTTCAGCACC--GCCCATGTCCCGGCCCGGCCACGGGGAGCCCCGCTTCATCGCCGTGGGCT---------ACATGCAGTTCGTGCGGTTCGACAGTGACGCCGCGAGTCCGAGGATAGAGCCGCGGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     328961 206 -    863181 GACCTGGGTAGCCG--------CGCGGGGAGGAGGGTCGGGCGGGTCTCAGCCTCTCCGCGCTCCCAGGCTCCCTCTCCTTGAGGTATTTCAGCACC--GCCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGTGATGCCGCGAGTCCGAGGATGGAGCCGCGAGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29363257 193 -  71996105 GACCCGGGGAGCCG--------CGCGGGGAGGAGGGTCGGGCGGGTCTCAGCCTCACCGCGCTCCCAGGCTCCCTCTCCTTGACATATTTCAGCACC--TCCCGTGTCCCGCCCCGGCCGCGGGGAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACGCAGTTCCTGCGGTTCGACAGTGACGCCGCGAGTCCGAGGA-------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     140776 197 -    735854 GACCTGGGGAGCCG--------CGCGGGGAGGAGGGTCGGGCGGGTCTCAGCCTCTCCGCGCTCCCAGGCTCCCACTCCTTGAGGTATTTCAGCACC--ATCCGTGTCCCGGCCCGGCCACGGGGAGCCCCGCTTCATCGCCGTGGGCT---------ACATGCGGTTCGTGCGGTTCGACAGTGACGCCGCGAGTCCGAGGATGGAGCCGCGGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      42399 205 -   1829203 GACGCGCGGAGCCG--------CGCGGGGAGGAGGGTCGGGCGGGTCTCAGCCTCTCCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCTACACC---TCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCTTCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAGGATGGAGCCGCGGGC
i colAng1.NW_012115577v1   C 0 M 438
s saiBol1.JH378341           123918 204 +    515838 GACCCGGGGAGCCG--------CGCCGGGTGGAGGGTC-GGCGGGTCTCAGCCCCTCCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCCACACC---ACCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGGTACATCACCGTGGGTTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGATTCCGAGGATCGAGCCGCGGGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     592098 205 -   1771730 GACCCGGGGAGCCG--------CTCCGGGAGGAGGGTCAGGCGGGTCTCAGCCCCTCCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCTTCACC---TCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCACCATGGGCTACGTGGACAACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGATTCCGAGGATGGAGCCGCGGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     228232 205 -    383796 GACCCGGGGAACCG--------CAGCGGGAGGAGGGTCGCGCTAGTTTCAGCACCTCCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCTACACC---TCTGTGTCCCGGCCTGGCCGCGGGGAGCCCCGCTTCATCTCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGATTCCGAGAGAGGAGCCGCGGGC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17363978 204 -  18854210 GACCCGGGAAGCCG--------CACCAGGAGTGTGTCGCGCCGGGTCTCAGCCCCTCCT-GCCCACAGGCTCCCACTCCCTGCGGTATTTCTCCACG---GCTGTGTCCCGTCCCGGCCGGGGGGCGCCCCAGTACATCGCCGTTGGCTACGTGGACGACACACAGTTCGTGCGGTTCGACAGCGACACGGAGAATCCGAGGATGGAGGCGTGGGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58016095 211 -  94987271 GACCCGAGGAACCACCAGAGATCCCCAGGATGA-GGTCG---GGGTCTCA-CCGCGCTCTGTCTGCAGGTTCACATTCCTTGCGGTATTTGGTAACCACGACCGTGTCTGGACCAGGTCTTCGAGATTCCCATGTCTTCATTGTTGGCTACATGAACTACATGCAGTTTATGCGCTTTGACAGTGATGGAACTACTCAGAGGATCCAGGCGCGAGG
i mm10.chr17               I 97 C 0
e calJac3.chr4             30307369  35 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444  35 +   2037526 I

a score=1684896.000000
s hg38.chr6_GL000254v2_alt  1351000 321 +   4827813 GCGGTGGGTGGAGCAGGAGGGGCC-GGAGTATTGGGACCTACAGACACTGGGCGCCAAGGCCCAGGCACAGACTGACCGAGTGAACCTGCGGACCCTGCTCCGCTACTACAACCAGAGCGAGGCGGGTGAGTGACCCCGGCCCGGGGCGCAGATCACTTACTCCCCGCTCCATGCCT-CACGGA-CGGCCCTG-GTCCC-CTGAGTCTCCGGGTCCAAGATCGACCCCGAGGCTGCGGGACCTGCAGAGATCCTCGACCCGGGAGAG--CCCCAGGCGCCTTTACCTGGTTTCATCTTCAGTTGAGGCCAAAATCTCCGCAGGTTGCT------------
s panTro5.chr6             30221869 319 + 175400573 GCGGTGGGTGGAGCAGGAGGGGCC-GGAGTATTGGGACCTACAGACACTGGGCGCCAAGGCCCAGGCACAGACTGACCGAGTGAACCTGCGGACCCTGCTCCGCTACTACAACCAGGGCGAGGCGGGTGAGTGACCCCGGCCCGGGGCGCAGATCACTTACTCCCCGCTCCATGCCT-CACGGA-CGGCCCTG-GTCCC---GAGTCTCCGGGTCCAAGATCGACCCCGAGGCTGCGGGACCTGCAGAGATCCTCGACCCGGGAGAG--CCCCAGGCGCCTTTACCTGGTTTCATCTTCAGTTGAGGCCAAAATCTCCGCAGGTTGCT------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30452053 319 + 173848474 GCGGTGGGTGGAGCAGGAGGGGCC-GGAGTATTGGGACCTACAGACACTGGGCGCCAAGGCCCAGGCACAGACTGACCGAGTGAACCTGCGGACCCTGCTCCGCTACTACAACCAGAGCGAGGCGGGTGAGTGACCCCGGCCCGGGGCGCAGATCACTTACTCCCCGCTCCATGCCT-CACGGA-CGGCCCTG-GTCCC---GAGTCTCCGGGTCCAAGATCGACCCCGAGGCTGCGGGACCTGCAGAGATCCTCGATCCGGGAGAG--CCCCAGGCGCCTTTACCTGGTTTCATCTTCAGTTGAGGCCAAAATCTCCGCAGGTTGCT------------
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74831075 321 + 122973662 GCGGTGGGTGGAGCAGGAGGGGCC-GGAGTATTGGGACCTACAGACACTGGGCGCCAAGGCCCAGGCACAGACTGACCGAGTGAACCTGCGGACCCTGCTCCGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCCCTGCCCGGGGTGCAGATCATTTACTCCCCGCTCCATGCCT-CACGGA-CGGCCCTG-GTCCC-CTGAGTCTTCGGGTCCAAGATCGACCCCGAGGCTGCGGGACCTTCAGAGATCCTCGACCCGGGAGAG--CCCCAGGCGTCTTTACCCGGTTTCATCTTCAGTTGAGGCCAAAATCTCCGCAGGTTGCT------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30616229 317 + 172585720 GCCGTGGATGGAGCAGGAGGGGCC-GGAGTATTGGGACCAGAACACACGGATCTGCAAGGCCGACACACAGACTCTCCGAGAGAACCTGCGGACCCTGCTCCGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCCCGGCCCGGGGCGCAGGTCAC-GACCCCT--CCACATCCCC-CACGGA-CGGCCCGC-GTCGCCCCGAGTCTCCGGGTCCCAGATACACCCCGAAGCCGCGGGACC--CCGAGACCCTTGACCCGGGAGAG--CCCCAGGCCTCTTTGCCCGGTTTCATTTTCAGTTGAGGCCAAAATCCCCGCCGGTTGGT------------
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     162299 323 +   1495729 GTGGTGGGTGGAGCAGGAGGGGCCTGGAGTATTGGGAGCTGCAGACACTGGGCGCCAAGGCCCAGGCACAGACTGGCTGAGTGAACCTGAGAACGCTGCTCCGATACTACAACCAGAGCGAGGCCGGTGAGTGACCCCCGCCCGGAGCGCATATCACTTACTCCTGGCTTCATGCCT-CACGGA-CGGCCCTG-GTCCCCTTGAGTCTCCGGGCCCAAGATCAACCCCGAGGCTGCGGGACCTGCAGAGATCCTCGACCCTGGAGAG--CCCCAGGAGCCTTTACCCGGTTTCATCTTCAGTTGAGGCCAAAATCTCTGCAGGTTGCT------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     329167 319 -    863181 GTGGTGGATGGAGCAGGAGGGGCC-GGAGTGTTGGGAGCTGCAGACCCTGGGCGCCAAGGCCCAGGCACAGACTGGCTGAGTGAACCTGAGGACCCTGCTCCGATACTACAACCAGAGCGAGGCCGGTGAGTGACCCCCGCCCGGGGCGCATATCACTTACTCCCGGCTTCATGA---CACGGA-CGGCCCTG-GTCCCCCTGAGTCTCCGGGCCCAAGATCAACCCCGAGGCTGCGGGACCTGCAGAGATCCTCGACCCTGGAGAG--CCCCAGGAGCCTTTACCCGGTTTCATCTTCAGTTGAGGCC-AAATCTCTGCAGGTTGCT------------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29363450 314 -  71996105 --------TGGAGCAGGAGGGGCC-GGAGTATTGGGAGTTGCAGACACTGGGCGCTAAGGCCCAGGCACAGACTGGCTGAGTGAACCTGAGGACCCTGCTCCGATACTACAACCAGAGCGAGGCCGCTGAGTGACCCTGGCCCAGGGCGCATATCACTTACTCCCGGCTTCATGCCT-CGCTGA-CGGCCCTG-GTCCCACTGAGTCTCCGGGTCCAAGATCGACCCCGAGGCTGCGGGACCTGCAGAGATCCCAGACCCTGGAGAG--CCCCAGGAGCCTTTACCAGGTTTCATCTTCAGTTGAGGCCAAAATCTCTGCAGGTTGCT------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     140973 323 -    735854 GTGGTGGGTGGAGCAGGAGGGGCCTGGAGTATTGGGAGCTGCAGACACTGGGCGCCAAGGCCCAGGCACAGACTGGCTGAGTGAACCTGAGGACCCTGCTCCCATACTACAACCAGAGCGAGGCCGGTGAGTGACCCCCGCCCGGGGCGCATATCACTTACTCCTGGCTTCATGCCT-CACGGA-CGGCCCTG-GTCCCCCTGAGTCTCCGGGCCCAAGATCAACCCCGAGGCTGCGGGACCTGCAGAGATCCTCGACCCTGGAGAG--CCCCAGGAGCCTTTACCCGGTTTCATCTTCAGTTGAGGCCAAAATCTCTGCAGGTTGCT------------
i manLeu1.NW_012107142v1   C 0 C 0
s saiBol1.JH378341           124122 318 +    515838 GGCGTGGATGGAGCAGGAGGGGCC-GGAGTATTGGGAGGAGCAGACACGGAGAGCCAAGGCCCACGCACAGACTTACCGAGGGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCCCGGCCCGGGGCGCAGGTCAC-GACCCCT--CCCCATCCCG-CACGGA-CGGCCCGG-GTCACCCCGAGTCCCCGGGTCCAAGATCCA-CCAGAGGCTGCGGGACCCGCCCTGACCCTCGATCGCGGAGAA--ACTCGGGCGCCTTTACCCGGTTTCATTTTCAGTTTGGGCCAAAATCTCCGCGGGTTGGT------------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     592303 316 -   1771730 GCCGTGGATGAAGCAGGA---GCC-GAAGTATTGGGACCGGGAGACACGGAACTCCAAGCAGAATGCACAGGCTTTCGGAGTGGGCCTGCAGACCCTGCTCGGCTACTACAACCAGAGCGAGGCCGGTGAGTGACCCCGGCCCGGAGTGCAGGTCAC-GACCCCT--CCTCATGCCT-CACAGA-CGGCCCGG-GTCGCCCTGAGTCTCCAGGTCCGAGATCCACCCCGAATCTGCGGGACCCGCCCAGACCCTCGACCCGGGAGAA--ACTCGAGCTTCTTTACCCGGTTTCATTTTCTGTTTAGGCCAAAATCCCCGCAGGTTGGT------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     228437 318 -    383796 GCCATGGGTGGAGCAGGAGGGGCC-GGAGTATTGGGACCAGAACACACGGATCTACAAGGCCCACGCACAGGCTGACCGAGTGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCTGGTAAGTGACCCCGGCCCGGGGCGCAGGTCAC-GACCCCT--CCCCGTTCCC-CACGGA-CGGCCCGG-GTCGCCTCGAGTCTCTGGGTCCGAGATCAACCCCGAGGCTGCGGGA-CCGCCCAGACCCTCTACCCGGGAGAA--ACTCGGGCGCCTTTACCCGGTTTCATTTTCAGTTTAGGCAAAAATCCCCGCGGGTTGGT------------
i aotNan1.NW_018496904v1   C 0 I 35
s otoGar3.GL873550         17364182 319 -  18854210 GCCGTGGGCGGAGCGGGAGGGGCC-GGAGTATTGGGACGAGGAGACACAGCGCGTCAAGGGCCACGCACAGGTTAACCGAGTGTGCGTGGACATCCTCCGCGGCCGCTACAACCAGAGCGAGGGCGGTGAGTGACCCCGGGCCGGATCGCAAGTCAC-GACCCCT--CCTCAC-CCC-CACAGA-CAACCCTGCGTCGC-CTGTGTCTCCACGTCCGCGACTTCCCCCAAGGCTGCGAGACCCGT-GAAACCTTCAACGCAGAAAGGGTGCACGGGGACCTTGACCCACTTTGGTTTTAAGTTTAGGGCGAAATCCCAGCAGGGTGGT------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58016306 297 -  94987271 GCCCTGGGTGAAGCAGATGGGGCC-TGTGTATTTGGAGATGGAAAGAAGGAAAATGGAGAGCTATTCACACAGGGCCCGAGAAAACCTGCGATTCGCAATCCAGGTCTACAACCAGAGCGACAAGGGTGAGTGACCC------------------------------CTTCACATCTCCACAGACCAATCTAA-GTCGCCCAGGGTC-CCAAACCCTAGGTTTGGCCAGAGGGTGGGGAATTTGCAGAGACCGGGAACCCAAGAGAA--TAGTGGAGGG-------AGGGCTGGTTTCCAGTGTAGGTGAAAAT-TCCATGGGTGGGCGGGGCTGACTTT
i mm10.chr17               C 0 C 0
e calJac3.chr4             30307369  35 + 171630274 I
e colAng1.NW_012115577v1      42604 438 -   1829203 M
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444  35 +   2037526 I

a score=36026.000000
s hg38.chr6_GL000254v2_alt  1351321 11 +   4827813 -AGGGGCCGGGC
s panTro5.chr6             30222188 11 + 175400573 -AGGGGCCGGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30452372 11 + 173848474 -AGGGGCCGGGC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74831396 11 + 122973662 -AAGGGCCGGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30616546 11 + 172585720 -CGGGGCGGGGC
i rheMac8.chr4             C 0 I 200
s macNem1.NW_012012100v1     162622 11 +   1495729 -AGGggcctggc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     329486 11 -    863181 -AGgggccggac
i cerAty1.NW_012002535v1   C 0 I 5
s chlSab2.chr17            29363764 11 -  71996105 -AGGGGCCGGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     141296 11 -    735854 -AGgggccgggc
i manLeu1.NW_012107142v1   C 0 C 0
s saiBol1.JH378341           124440 10 +    515838 --GGGGCGGGGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     592619 10 -   1771730 --GGGACGGGGC
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         17364501 10 -  18854210 -CGGGGCTGGG-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58016603 11 -  94987271 GAGGGACTGTC-
i mm10.chr17               C 0 C 0
e aotNan1.NW_018496904v1     228755 35 -    383796 I
e calJac3.chr4             30307369 35 + 171630274 I
e colAng1.NW_012115577v1      42604 438 -   1829203 M
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=10405.000000
s hg38.chr6_GL000254v2_alt  1351332 10 +   4827813 CAGGGCTCGG---------
s panTro5.chr6             30222199 10 + 175400573 CGGGGCTCGG---------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30452383 10 + 173848474 CGGGGCTCGG---------
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74831407 10 + 122973662 CGGGGCTCGG---------
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1     162633 10 +   1495729 cggggctggg---------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     329502 10 -    863181 cggggctggg---------
i cerAty1.NW_012002535v1   I 5 C 0
s chlSab2.chr17            29363775 10 -  71996105 CGGGGTTGGG---------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     141307 10 -    735854 cggggctggg---------
i manLeu1.NW_012107142v1   C 0 C 0
s saiBol1.JH378341           124450 10 +    515838 GGGGACTTTT---------
i saiBol1.JH378341         C 0 I 14
s cebCap1.NW_016107755v1     592629 10 -   1771730 GAGGACTTTT---------
i cebCap1.NW_016107755v1   C 0 I 14
s otoGar3.GL873550         17364511  9 -  18854210 AGAGAATGG----------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58016614 19 -  94987271 TGAGCCTCTCACCCTGAGA
i mm10.chr17               C 0 C 0
e aotNan1.NW_018496904v1     228755 35 -    383796 I
e calJac3.chr4             30307369 35 + 171630274 I
e colAng1.NW_012115577v1      42604 438 -   1829203 M
e macFas5.chr4             29963949 33443 - 170955103 I
e rheMac8.chr4             30616557 200 + 172585720 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=154314.000000
s hg38.chr6_GL000254v2_alt  1351342 29 +   4827813 --TGGGCGGGGCTGACC---GCGGGAACTGGGCC--------
s panTro5.chr6             30222209 29 + 175400573 --TGGGCGGGGCTGACC---GCGGGAACTGAGCC--------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30452393 29 + 173848474 --TGGGCGGGGCTGACC---GCGGGAACTGAGCC--------
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74831417 29 + 122973662 --TGGGCGGGGCTGACC---GCGGGAACTGGGCC--------
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1     162643 29 +   1495729 --tgggcggggctgACC---GCGGGAACTGGGCC--------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     329512 29 -    863181 --tgggcaggACTGACC---TCGGGAACTGAGCC--------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29363785 29 -  71996105 --TGGGCGGGGCTGACC---GCGGGAACTGGGCC--------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     141317 29 -    735854 --tgggcggggctgACC---GCGGGAACTGGGCC--------
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30307404 29 + 171630274 --TGGGTGGGGCTGACC---GCGGGGGCGGGGCC--------
i calJac3.chr4             I 35 C 0
s saiBol1.JH378341           124474 28 +    515838 --TGGGCGGGGCTGA-C---GCGGGGGCGGGGCC--------
i saiBol1.JH378341         I 14 C 0
s cebCap1.NW_016107755v1     592653 28 -   1771730 --TGGACGGAGCTGA-C---ACGGGGGCGGGGCC--------
i cebCap1.NW_016107755v1   I 14 C 0
s aotNan1.NW_018496904v1     228790 28 -    383796 --TGGGCGGGGCTGA-C---GCGGGGGCGGGGCC--------
i aotNan1.NW_018496904v1   I 35 C 0
s otoGar3.GL873550         17364520 32 -  18854210 --TGGACGCGGCTGACCGCGGCGGGGCCGGGGCC--------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58016633 39 -  94987271 TGGGGGTAAGGAGAAGT---TTGAGCACAGAGCCTTTGTGGC
i mm10.chr17               C 0 C 0
e colAng1.NW_012115577v1      42604 438 -   1829203 M
e macFas5.chr4             29963949 33443 - 170955103 I
e rheMac8.chr4             30616557 200 + 172585720 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=657567.000000
s hg38.chr6_GL000254v2_alt  1351371 93 +   4827813 AGGGTATCACATCCTCCAGGGAATGTTTGGCTGCGACCTGGGGCCCGACGGGCGTCTCCTCCGCGGGTATGAGCAGTATGCCTACGACGGCAA
s panTro5.chr6             30222238 93 + 175400573 AGCGTATCACATCCTCCAGGGAATGTTTGGCTGTGACCTGGGGCCCGACGGGCGTCTCCTCCGCGGGTATGAGCAGTATGCCTACGACGGCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30452422 93 + 173848474 AGCGTATCACATCCTCCAGGGAATGTTTGGCTGTGACCTGGGGCCCGACGGGCGTCTCCTCCGCGGGTATGAGCAGTATGCCTACGACGGCAA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74831446 93 + 122973662 AGGGTCTCACATCCTCCAGGGAATGTTTGGCTGCGACGTGGGGCCCGACGGGCGTCTCCTCCGCGGGTATGAGCAGTATGCCTACGACGGCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30616757 93 + 172585720 AGGGTCTCACACCCTCCAGACGATGTACGGCTGCGACCTGGGGCCGGACGGGCGCCTCCTCCGCGGGTATGACCAGTCCGCCTACGACGGCAG
i rheMac8.chr4             I 200 C 0
s macNem1.NW_012012100v1     162672 93 +   1495729 AGGGTCTCACACCCTCCAGGTAATGTTTGGCTGCGACGTGGGGCCCGACGGATGCCTCCTCTGCTGGTATGAACAGTATGCCTACGACGGCAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     329541 93 -    863181 AGGGTCTCACACCCTCCAGGTAATGTTTGGCTGCGACGTGGGGCCGGATGGATGCCTCCTCCGCTGGTGTGAACAGTATGCCTTCGACGGCAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29363814 93 -  71996105 AGGGTCTCACACCCTCTAGGTAATGTTTGGCTGCAACCTGGGGCCCGACGGATGCCTCCTCCGCTGGTATGAACAGTATGCCTACGACGGCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     141346 93 -    735854 AGGGTCTCACACCCTCCAGGTAATGTTTGGCTGCGACCTGGGGCCCGACGGATGCCTCCTCCGCTGGTATGAACAGTATGCCTACGACGGCAA
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30307433 93 + 171630274 AGGGTCTCACACCATCCAGTGGATGTCTGGCTGCGACCTGGGGCCGGATGGGCTCCTCCTTCATGGGTATGAAAGGCACGCCTACGACGGCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           124502 93 +    515838 AGGGTCTCACACCTACCAGACGATGTACGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGTATAACCAGTTCGCCTACGACGGCAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     592681 93 -   1771730 AGGGTCTCACACGCTCCAGGCGACGTACGGCTGAGACCTGGGGCCGGACTGGCACCTCCTCCGCGGGTATGACCAGCACGCCTACGACGGCAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     228818 93 -    383796 AGGGTCTCACACGCTCCAGACGATGTTTGGCTGCGACATGGGGCCGGACGGGCGCCTTCTCCGCGGGTATCGCCAGTACGCCTACGACGGCAA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17364552 93 -  18854210 AGGGTCTCACACTATACAGTGGATGTACGGCTGCGACGTGGGGCCAGACGGGCGCCTCCTCCGCGGGTACTGGCAGGAAGCCTACGACGGCGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58016672 93 -  94987271 AGCCTCTCACACCTTCCAATGTTTAATCAGTTGCAACATGGGGCCAGACCGACGCCTCCTCCGTGGGCACCATAGACATGCTTTTGATGGCAG
i mm10.chr17               C 0 C 0
e colAng1.NW_012115577v1      42604 438 -   1829203 M
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=1828289.000000
s hg38.chr6_GL000254v2_alt  1351464 235 +   4827813 GGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGATACCGCGGCTCAGATTACCCAGCGCAAGT-ATGAGGCGGCCAATGTGGCTGAGCAAAGGAGAGCCTACCTGGAGGGC-ACCTGCATGGAGTGGCTCCGCAGACACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCATGGGGAGCCTGCTCGATCTCCTGTAGATCTCCCGGGC
s panTro5.chr6             30222331 236 + 175400573 GGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGATACCGCGGCTCAGATCACCCAGCGCAAGTTATGAGGCGGCTAATGTGGCTGAGCAAAGGAGAGCCTACCTGGAGGGC-ACCTGCATGGAGTGGCTCCGCAGACACCTGGAGAACGAGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCATGGGGAGCCTGCTCGATCTCCTGTAGATCTCCCGGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30452515 236 + 173848474 GGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGATACCGCGGCTCAGATCACCCAGCGCAAGTTATGAGGCGGCTAATGTGGCTGAGCAAAGGAGAGCCTACCTGGAGGGC-ACCTGCATGGAGTGGCTCCGCAGACACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCATGGGGAGCCTGCTCGATCTCCTGTAGATCTCCCGGGC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74831539 224 + 122973662 CGATTACATCGCCCTGAACGAGGACATGCGCTCCTGGACCGCCGCGGACACCGCGGCTCAGATCACCCAGCGCAAGT-GGGAGGCGGCTAATGTGGCTGAGCAAAGGAGAGCCTACCTGGAGGGC-ACCTGCGTGGAGTGGCTCCGCAGACACCTGGAGAATGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCATGGGGAGCCTCCTC-----------GATCTCCCGGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30616850 235 + 172585720 GGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACATGGCGGCTCAGAACACCCAGCGGAAGT-GGGAGGCGGCGGGTGTGGCGGAGCAGTGGAGAGCCTACCTGGAGGGC-CAGTGCCTGGAGTCGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCACGGGGTGCCTCCCTGATCGCCTGTAGATCTCCCGGGC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     162765 227 +   1495729 GGATTATATCGCCCTGAACGAGGACCTGAGCTCCTGGAC--------ACGCAGCGGCTCAGACCATCCTGCGCAAGT-GGGAGGCGGCCAATGTGGCTGAGCAAAGGAGAGCCTATCTGGAGGGC-AACTGCGTAGAGTGGCTCCGCAGACACCTGTAAAAGGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCATGGGGTGCCTCCTAGATCTCCTGTAGATCTCCTGGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     329634 235 -    863181 GGATTACATCGCCCTGAACCAGGACCTGCGCTCCTGGACCGCCGCGGACACCGCGGCTCAGATCACCCAGCGCAAGT-GGGAGGCGGCCAATGTGGCTGAGCAAAGGAGAGCCTATCTCGAGGGC-ACCTGCGTGGAGTGGCTCCGCAGACACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCATAGGGTGCCTCCTAGATCTCCTGTAGATCTCCTGGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29363907 227 -  71996105 GGATTACATCGCCCTGAACGAGGACCTGAGCTCCTGGAC--------ACGCCGCGGGTCAGACTACCCTGCGCAAGT-GGGAGGCGGCCAATGTGGCTGAGCGAAGGAGAGCCTATCTGGAGGGC-ACCTGCGTGGAGTGGCTCCGCAGGCACCTGTAGAACTGGAAGGAGACACTGCAGCGCGCGGGTACCAGGGGCCATGGGGTGCCTCCTAGATCTCCTGTAGATCTCCTGGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     141439 227 -    735854 GGATTATATCGCCCTGAACGAGGACCTGAGCTCCTGGAC--------ACACAGCGGCTCAGACCACCCTGCGCAAGT-AGGAGGCGGCCAATGTGGCTGAGCAAAGGAGAGCCTATCTGGAGGGC-AACTGCGTAGAGTGGCTCCACAGACACCTGTAAAAGGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCATGGGGTGCCTCCTAGATCTCCTGTAGATCTCCTGGGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      43042 235 -   1829203 GGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGACATGGCGGCTCAGAACACCCAGCGGAAGT-GGGAGGCGGCCGGTGCGGCGGAACAGATGAGAGCCTACCTGGAGGGC-CGGTGCGTGGAGTCGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCAGGTACCAGGGGCCACGGGGCGCCTCCCTGATCGCCTGTAGATCTCCGGGGC
i colAng1.NW_012115577v1   M 438 I 66863
s calJac3.chr4             30307526 234 + 171630274 GGACTACATCGCCCTGAAGGAGGAACTGCGCTCCTGGACGGCTGCGGACTTCGCGGCTCAGATCACCCAGCCCAAGT-GGGAGGTGGCCAATGTGGCTGAGGGGACGAGAGCCTACCTGGAGGGC-AAGTGCCTGTAGTGGCTCCACAGATACCTGGAGAACGGGAATGAGACCCTGCAGCGTGCGGTTACCAGGGGCCA-GGGGAACCTCCCTGATGGTCTGTAGACCTCCCAGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           124595 234 +    515838 GGACTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACGGCCGCGGACACGGCGGCTCAGATCACCCAGCGCAAGT-GGGAGGCGGCCAGTGAGGCTGAGAGAATGAGAGCCTACCTGGAGGGC-ACATGCCTGGAGTCGCTCCACAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCTGGTACCAGGGGCCA-GGGGAACCTCCCTGATCGCCTGTAGACCTCCCAGGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     592774 225 -   1771730 GGACTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCTGCGGACACGGCGGCTCAGATCACCCAGCGCAAGT-TCGAGGCGGCCAATGTGGCTGAGCAAGGGAGAGCCTACCTGGAGGGT-GAGTACTTGGAGTGGCTCCGCAGACACCTGGAGAAAGGGAAGGAGACGCTGCAGCGCACCGGTACCAGGGGCCAGGGGGAACCTCCCTGAT----------CCTCCCAGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     228911 235 -    383796 GGACTACCTCGCCCTGAACGAGGACCTGCGCTCCTGGACGGCCGCGGACGTGGCGGCTCAGATCACCAAGCGCAAGT-GGGAGGCGGCCAATGCGGTGGAGCAATACAGAGCCTACCTGGAGGGC-ACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGGTACCAGGGGCCAGCGGGAACCTCCCTGATCACCTGTAGACCTCCCAGGC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17364645 233 -  18854210 CGACCATCTCACCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACCCGGTAGCTCAGATTGCCAAGCGCGATT-TGGAGGCGAGGCGTGACGCCGAGTACTGGAGGGCCTACCTGGAGGGC-AGGTGCGTGGAGTCGCTCCGCAGACACCTGGAGTACGGGAAGGACACGCTGCAGCGCGCGGGTACGAGGGG-CGCGGGGCACCTCCCACATCTCCTGTAGGTCTCCCGCC-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58016765 230 -  94987271 CTATTACATCATTCTGAACTTGGACCGGAAAACATGGACTGAGGCAGACAGTACGGCTCAGATCACCCAGCGACAGT-GGAAGGCAGAAGGTGTAGCAGAGGCCTTCAGCCACTTCTTGAAAGTCTTCTTGTGTTCAGTGGCTACTGAGGCACTTGGAGATAGGGAAGGAGACTCTACAGCGCTCAGGTATCAGGGCCTGAAAAGTAACTCCTCTATCT------GCACTCAGAGGA
i mm10.chr17               C 0 C 0
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444  35 +   2037526 I

a score=8380994.000000
s hg38.chr6_GL000254v2_alt  1351699 1056 +   4827813 --TGGCCTCGCACAAGGAGGGGAAGAAAATGGAACCACCACCAGAATATCGCC-CTCCCTCCTGTCCTGACGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTATCAGAGATTGAC--TCTGAGGGCCCACCCTGCTCTTCCTGGGACAATTAAGGGATGAAGTCTCTGAGGGAGTGGAGGGGAAGACAATCCCTGGAAGACTGATCCGCGGTCCCCTTTCACCCC-ACAGCAACCTTGGGCACCAGGACTTTTCCTCCCGGGCCTTGTTCTCTGCCTCACACTCAATG--TGTCGGAGT-----------CTGACTCCAGCTCCTCTGAGTCCCT-TGGCCTCCACTCAGA----------TCAGGACCAGAAG---------TCCCTGCT-------ACCCTGCTCAGAGACTAGAACTTTCCAAGGAATAGGAGATTATCCCAGGCGCCTGTGTCCAGGCTGG-TGTCTGGGCTCTGTGCTCCCTTCCCCACCCCAGGTGTCCTATTCA---TCAGGATGGTCACATGGGCGCTGCTGGGGTGTCCCATGAGGAATGCAAAGTGCCTGAGTTTTCCGACTCTTCCTTTCAGA-CCCCCCCCA------AGACACACGTGACCCACCCCCCT--CTCTGAACATGAGG-CATAACGAGGTCCT-GGGTTCTGGGCTTCTACCCTGCGGAGATCACATTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACATGGAGCTCGTGGAGACCAGGCCCACAGGGG---ATGGAACCTTCCAGAAGTGGGCGGTTGTGGTAGTGCCTTCTGGAGAGGAACAGAGATACACATGCCATGTGCAGCACAAGGGGCTGCCCAAGCCCCTCATCCTGAGATGGGGTAAGGAGAGAGATGGGGGC-GG-CCATGTCTCTT---AGGGAAAGCAGGAGCCCCTCTGGAGACCTTTAGCAGGGT------CGGGG--------CTGGGTCCTGGAGGTCA-GAACCCTC--ACATTCCCCTCCTTTCCCAGAGCCCTCTCCCCAG----CCCACCATC----CCCATTGTGGGTATCATTGCTGGCCTGGTTCTCCTTGGAGCTGTGGTCACTGGAGCTGTGGTCACTGCTGTGATGTGGAGGAAGAAGAGCTC
s panTro5.chr6             30222567 1047 + 175400573 --TCGCCTCGCACAAGGAGGGGAAGAAAATGGAAACACCACCAGAATATCGCC-CTCCCTCCTGTCCTGACGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTATCAGAGATTGAC--TCTGAGGGCCCACCCTGCTCTTCCTGGGACAATTAAGGGATGAAGTCTCTGAGGGAGTGGAGGGGAAGACAATCCCTGGAAGACTGATCCGCGGTCCCCTTTCACCGC-ACAGCAACCTTGGGCACCTGGACTTTTCCTCTCGGGCCTTGTTCTCTGCCTCACACTCAATG--TGTCGGAGT-----------CTGACTCCAGCTCCTCTGAGTCCCT-TGGCCTCCACTCAGA----------TCAGGACCAGAAG---------TCCCTGCT-------ACCCCGCTCAGAGACTAGAACTTTCAAAGGAATAGGAGATTATCCCAGGCGCCTGTGTCCAGGCTGG-TGTCTGGGTTCTGTGCTCCCTTCCCCACCCCAGGTGTCCTATTCA---TCAGGATGGTCACATGGGCGCTGCTGGGGTGTCCCATGAGGAATGCAAAGTGCCTGAGTTTTCTGACTCTTCCTTTCAGA-CCCCCCCCCCCCC--AGACACACGTGACCCACCACCCTGTCTCTGAACATGAGG-CATAATGAGGTGCT-GGGTTCTGGGCTTCTACCCTGCGGAGATCACATTGACCTGGCAGTGGAATGGGGAGGACCAGACCCAGGACATGGAGCTCGTGGAGACCAGGCCCGCAGGGG---ATGGAACCTTCCAGAAGTGGGCGGTTGTGGTAGTGCCTTCTGGAGAGGAACAGAGATACACATGCCATGTGCAGCACAAGGGGCTGCCCAAGCCCCTCATCCTGAGATGGGGTAAGGAGAGAGATGGGGGC-GG-TCATGTCTCTT---AGGGAAAGCAGGAGCCCCTCTGGAGACCTTTAGCAGGGT------CGGGG--------CTGGGTCCTGGAGGTCA-GAACCCTC--ACATTCCCCTCCTTTCCCAGAGCCCTCTCCCCAG----CCCACCATC----CCCATTGTGGGTATCATTGCTGGCCTGGTTCTCCTTGGAGCTGTGGTCACTG---------------CTGTGATGTGGAGGAAGAAGAGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30452751 1047 + 173848474 --TGGCCTCGCACAAGGAGGGGAAGAAAATGGAAACACCACCAGAATATCGCC-CTCCCTCCTGTCCTGACGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTATCAGAGATTGAC--TCTGAGGGCCCACCCTGCTCTTCCTGGGACAATTAAGGGATGAAGTCTCTGAGGGAGTGGAGGGGAAGACAATCCCTGGAAGACTGATCCGCGGTCCCCTTTCACCGC-ACAGCAACCTTGGGCACCTGGACTTTTCCTCTCGGGCCTTGTTCTCTGCCTCACACTCAATG--TGTCGGAGT-----------CTGACTCCAGCTCCTCTGAGTCCCT-TGGCCTCCACTCAGA----------TCAGGACCAGAAG---------TCCCTGCT-------ACCCCGCTCAGAGACTAGAACTTTCAAAGGAATAGGAGATTATCCCAGGCGCCTGTGTCCAGGCTGG-TGTCTGGGTTCTGTGCTCCCTTCCCCACCCCAGGTGTCCTATTCA---TCAGGATGGTCACATGGGCGCTGCTGGGGTGTCCCATGAGGAATGCAAAGTGCCTGAGTTTTCTGACTCTTCCTTTCAGA-CCCCCCCCTCCCC--AGACACACGTGACCCACCACCCTGTCTCTGAACATGAGG-CATAATGAGGTGCT-GGGTTCTGGGCTTCTACCCTGCGGAGATCACATTGACCTGGCAGTGGAATGGGGAGGACCAGACCCAGGACATGGAGCTCGTGGAGACCAGGCCCGCAGGGG---ATGGAACCTTCCAGAAGTGGGCGGTTGTGGTAGTGCCTTCTGGAGAGGAACAGAGATACACATGCCATGTGCAGCACAAGGGGCTGCCCAAGCCCTTCATCCTGAGATGGGGTAAGGAGAGAGATGGGGGC-GG-TCATGTCTCTT---AGGGAAAGCAGGAGCCCCTCTGGAGACCTTTAGCAGGGT------TGGGG--------CTGGGTCCTGGAGGTCA-GAACTCTC--ACATTCCCCTCCTTTCCCAGAGCCCTCTCCCCAG----CCCACCATC----CCCATTGTGGGTATCATTGCTGGCCTGGTTCTCCTTGGAGCTGTGGTCACTG---------------CTGTGATGTGGAGGAAGAAGAGCTC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74831763 1061 + 122973662 --TGGCCTCACACAAGGAGGGGAAGAAAATGGGACTACCACCAGAATATCGCC-CTCCCTCCTGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTACCAGAGATTGAC--TCTGAGGGCCCACCCTGCTCTTCCTGGGACAATTAAGGGATGAAGTCTCTGAGGGAAGGGAGGGGAAGACAATCCCTGGAATACTGATCCGCGGTCCCCTTTGACCCC-ACAGCAGCCTTGGGCACCGAGACTTTTCCTCTCGGGCCTTGTTGTCTGCCTCACACTCAATGTTTGTCGGAGT-----------CTGACTCCAGCTCCTCTGAGTCCCT-TGGCCTCCACTCAGA----------TCAGGACCAGAAG---------TCCCTGCT-------ACCCCGCTCAGAGACTAGAACTTTCCAAGGAATAGGAGATTATCCCAGGTGCCTGTGTCCAGGCTGG-TGTCTGGGTTCTGTGCTCCCTTCCCCACCCCAGGTGTCCTGTTCATTCTCAGGATGGTCACATGCGCGCTACTGGGGTGTCCCATGAGAGATGCAAAGTGCCTGAGTTTTCTGACTCTTCCTTTCAGA-CCCCCCCA-------AGACACACGTGACCCACCACTCTGTCTCTGAACATGAGGCCACCCTGAGGTGCT-GGGCTCTGGGCTTCCACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAAACCCAGGACACGGAGCTGGTGGAGACCAGGCCTGCAGGAG---ATGGAAACTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAACAGAGATACATGTGCCATGTGCAGCACGAGGGGCTGCCTGAGCCCCTCACCCTGAGATGGGATAAGGAGAGAGATGGGG---GG-TCATGTCTCTT---AGGGAAAGCAGGAACCCCTCTGGAGACCTTTAGCAGGGT------CAGGG--------CTGGGTCCTGGAGGTCA-GAACCCTC--ACATTCCCCTCCTTTCCCAGAGCTGTCTCCCCAG----CCCACCATC----CCCATTGTGGGTATCATTGCTGGCCTGGTTCTCCTTGGAGCTGTGGTCACTGGTGCTGTGGTCACTGCTGTGATGTGGAGGAAGAAGAGCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30617085 1039 + 172585720 --TGGCCTCCCACAAGGAGGGGAGACAAATGGGATCAACACTAGAATATCGCC-CTCCCTCTGGTCCTGAGGGAGAGGAATCCTCCTGGGTTTTCAGATCCTGTACCAGAGAGTGAC--TCTGAGGGTCCACCCTGCTCT--CTGACACAATTAA-CGATAAAATCTCTGAGGGAATGAA-GGGAAGACGATCCCTCGAATACTGATCAGGGGTTCCCTTTGACACCGGCAGCAGCCTTGGGCCCCGTGACTTTTCCTCTCAGGCCCTGTTCTCTGCTTCACACTCAATGTGTGTGAGGGT-----------CTGAGTCCAGCTCCGCTGAGTCCCT-CAGCCTCCACTCAGG----------TCAGGACCAGAAG---------TCACTG-T-------TCCCTCCTCAGGGAACAGAATTTTCCACGGAATAGGAGATTATCCCAGGTACCTCTGTCCAGGATGG-TGTCTGGGTTCTGGGCTCCCTTCCCCACCCCAGGTGTCCTGTCCATTCTCAAGATGGTCACATGTGTGCTGGTGGAGTGTCCCATGACAGATGCAAAATGCCTGAATTTTCTGACTCTTCCCATCAGA-CCCCCCCA-------AGACACATGTGACCCACCACCCCGTCTCTGACCATGAGGCCACCCTGAGGTGCT-GGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAAACTCAGGACACGGAGCTCGTGGAGACCAGGCCTGCAGGAG---ATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAAAGGAGCAGAGATACACCTGTCATGTGCAGCATGAGGGTCTGCCCGAGCCCCTCACCCTGAGATGGGGTAAAGAGGGAGATGGGGG--TG-TCATGTCTCTT---AGGGAAAGCCGGAGCCTCTCTGGAGACCTTTAGCAGGGT------CAG----------------------------GACCCCTC--ACCTTCCCCTCTTTTCCCAGAGCCGTCTTCCCAG----TCCACCATC----CCCATGGTGGGCATCATTGCTGGCCTGGTTCTCCTTGGAACTGTGGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAGGAAGAGCTC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     162992 1057 +   1495729 --TGGCCTCGCACAAGGAGGGGAAGAAAATGGCAACACCACCGGAATATCGCC-CTCCCTCTGGTCCCGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTACCAGAGAGTGAC--TCTGAGGGCCCGCCCTGCTCT--CTGGGACAGTCAAGGGATGAAGTCTCTGAGGGAGTGGA-GGGAAGACAATCCCTGGAATACTGATCAGGGGTTCCCTTTGACCCC-ACAGCAGCCTTGGGCACCAGGACTTTTCCCCTCAGGCCTTGTTCTCTGCCTCACACTCAATGTGTGTGGGGGT-----------CTGACTCCAGCTCCTCTGAATCCCT-TGGCCTCCACTCAGG----------TCAGGACCAGAAG---------TCCCTGCT-------CCCCTGCTCACAGACTAGAACTTTCCAAGGAAT---AGATTATCCCAGGTGCCTGTGTCCAGGCTAG-TGTCTGGCTTCTGTGCTCCCTTCCTGACCCCAGGTGTCCTGTCCATTCTCAAGATGGCCACATGAATGCTGCTGGGGTTTCCCATGAGAGATGCAAAGTGCCTGAGTTTTCTGACTCTTCCTTTCAGAGCCCCCACA-------AGACACATGTGACCCACCACCCTGTCTCTGAACACGAGGCCACCCTAAGGTGCT-GGGCCCTGGGCTTGTATCCTGCGGAGATCACACTGACCTGGCAGTGGGATGGGGAGGACCAGACCCAGGACATGGAGCTCGGGGAGACCAGGCCCGCAGGGG---ATGGAACCTTCCAGAAGTGGGTGGCTGTGGTGGTGCCTTCTGCAGAGGAGCAGAGATTCACATGCCATGTGCAGCATGAGGGTCTGCCCAAGCCCCTCACCCTGAGATGGGGTAAGTAGGGAGATGGGGG--GA-TCATGTCTCTT---AGGGAAAGCAGGAGCCCCTCTGGAGACCTTTAGCAGGGT------CGGGT--------CTGGGGCCTGGGGGTCA-GAACCCTC--ACTTTCCCCTTTTTTCCCAGAGCCGTCTCTCCAG----CCCACCATC----CCCATCATGGGCATCATTGCTGGCCTGGTTGTCCTTGCAGCTGTCGTCACTGGAGCTGTGGTCGCTGCTGTGCTACAGAGGAAGAAGAGCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     329869 1059 -    863181 --TGGCCTCGCACAAGGAGGGGAAGAAAATGGCAACACCACCAGAATATCGCC-CTCCCTCCAGTCCTGAGGGAGAGGAATCCTCCTTGGTTTCCAGATCCTGTACCAGAGAGTGAC--TCTGAGGGCCCGCCCTGCTCT--CTGGGACAATTAAGGGATGAAGTCTCTGAGGGAGTGGAGGGGAAGACAATCCCTGGAATACTGATCAGGAGTTCCCTTTGACCCC-ACAGCAGCCTTGGGCACCAGGACTTTTCCCCTCAAGCCTTGTTCTCTGCCTCACACTCAATGTGTGTGGGGGT-----------CTGACTCCAGCTCCTCTGAGTCCCT-TGGCCTCCGCTCAGG----------TAAGGACCAGAAG---------TCCCTGCT-------CCCCCGCTCAGAGACTAGAACTTTCCAAGGAATAGGAGATTATCCCAGGTGCCTGTGTCCAGGCTGC-TGTCTGGGTTCTGTGCTCCCTTCCACACCCCGGGTGTCCAGTACATTCTCAGGACGGTCACATGAGTGCTGCTGGGGTGTCCCATGAGAGATGCAAAGTGCTCGAGTTTTCTGACTCTTCCTTTCAGA--CCCCCCA-------AGACA-ACGTGACCCACCACCCTGTCTTTGACTATGAGGCCACCCTGAGGTGCT-GGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTCGCAGTGGGATGGGGAGAAGCAGACCCAGGACATGGAGCTCCTGGAGACCAGGCCCGCAGGGG---ATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATTCACATGCCATGTGCAGCATGAGGGTCTGCCCAAGCCTCTCACCCTGAGATGGGGTAAGGAGGGAGATGGGGG--GGATCATGTCTCTT---AGAGGAAGCAGGAGCCCCTCTGGAGACCTTTAGCAGGGT------CGGGT--------CTGGGGCCTGGGGGTCA-GAACCCTC--AAATTCCCCTCTTTTCCCAGAGCCGTCTCTCCAG----CCCACCATC----CCCATCTTGGGTATCATTGCTGGCCTGGTTGTCCTTGTAGCTGTCATCACTGGAGCTGTCATTGCTGCTGTGCTATGGAGGAAGAAGAGCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29364134 1053 -  71996105 --TGGCCTCGCACGAGGAAGGGAAGAAAATGGCAACACCACCAGATTATCGCC-CTCCCTCCGGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTACCAGAGAGTGAC--TCTGAGGGCCTGCCCTACTCT--CTGGGACAGTCAAGGTATGAAGTCTCTGAGGGAGTGGAGGGGAAGACAATCCCTGGAATACTGATCAGGAGTTCCCTTTGACCCC-ACAGCAGCCTTGGGCACCAGGACCTTTCCCCTCAGGCCTTGTTCTCTGCCTCACACTCAATGTGTGTGGGGGT-----------CTAACTCCAGCTCCTCTGAATCCCT-TGGCCTCCAC---------------TCAGGACCAGAAG---------TCCCTGCT------CCCCCCGTTCAGAGACTAGAACTTTCCAAGGAAT---AGATCATCCCAGGTGCCTGTGTCCAGGATGG-TGTCTGGGTTCTGTGCTCCCTTCCCCACCCCAGGTGTCCTGCACATTCTCAAGATGGCCACATGGGTGCTGCTGGGGTGTCCCATGAGAGATGCAAAGTGCCTGAGTTTTCTGACTCTTCCTTTCAGA-TCCCCCCA-------AGACACACGTGACCCACCACCCCGTCTCTGAACACGAGGCCACCCTGAGGTGCT-GGGCCCTGGGCTTGTACCCTGCGGAGATCACACTGACCTGGCAGTGGGACGGGGAGGACCAGACCCAGGACATGGAGCTTGGGGAGACCAGGCCCGCAGGGG---ATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATTCACATGCCATGTGCAGCATGAGGGTCTGCCCAAGCCCCTCACCCTGAGATGGGGTAAGGAGGGAGATGGAGG--TA-TCATGTCTCTT---AGGGAAAGCAGGAGCCCCTCTGGAGACCTTTAGCAGGGT------CGGGT--------CTGGGGCCTGGGGTTCA-GAACCCTC--ACATTCCCCTCCTTTCCCAGAGCTGTCTCTCCAG----CCCACCATC----CCCATCATGGGTATCATTGCTGGCCTGGTTATCCTTGCAGCTGTCATCACTGGAGCTGTGGTCGCTGCTGTGCTATGGAGGATGAAGAGCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     141666 1056 -    735854 --TAGCCTCGCACAAGGAGGGGAAGAAAATGGCAACACCACCAGAATATCGCC-CTCCCTCCGGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCGGTACCAGAGAGTGAC--TCTGAGGGCCCGCCCTGCTCT--CTGGGACAGTCAAGGGATGAAGTCTCTGAGGGAGTGGA-GAGAAAACAATCCCTGGAATACTGATCAGGGGTTCCCTTTGACCCC-ACAGCAGCCTTGGGCACCGGGACTTTTCCCCTCAGGCCTTGTTCTCTGCCTCACACTCAATGTGTGTGGGGGT-----------CTGACTCCAGCTCCTCTGAATCCCT-TGGCCTCCACTCAGG----------TCAGGACCAGAAG---------TCCCTGCT-------CCCCCGCTCACAGACTAGAACTTTCTAAGGAAT---AGATTATCCCAGGTGCCCGTGTCCAGGCTAG-TGTCTGGGTTCTGTGCTCCCTTCCTGACCCCAGGTGTCCTGTCCATTCTCAAGATAGCCACATGAATGCTGCTGGGGTTTCCCATGAGAGATGTAAAGTGCCTGAGTTTTCTGACTCTTCCTTTCAGA-CTCCCCCA-------AGACACACGTGACCCACCATCCTGTCTCTGAACACGAGGCCACCCTGAGGTGCT-GGGTCCTGGGCTTGTATCCTGCAGAGATCACACTGACCTGGCAGTGGGATGGGGAGGACCAGACCCAGGACATGGAGCTCGGGGAGACCAGGCCCGCAGGGG---ATGGAACCTTCCAGAAGTGGGTGGCTGTGGTGGTGCCTTCTGCAGAGGAGCAGAGATTCACATGCCATGTGCAGCATGAGGGTCTGCCCAAGCCCCTCACCCTGAGATGGGGTAAGTAGGGAGATGGGGG--GA-TCATGTCTCTT---AGGGAAAGCAGGAGCCCCTCTGGAGACCTTTAACAGGGT------CAGGT--------CCGGGTCCTGGGGGTCA-GAACCCTC--ACATTCCCCTCTTTTCCCAGAGCCGTCTCTCCAG----CCCACCATC----CCCATTGTGGGCATCATTGCTGGCCTGGTTGTCCTTGCAGCTGTTGTCACTGGAGCTGTGGTCGCTGCTGTGCTGTGGAGGAAGAAGAGCTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     110140 1050 -   1829203 --TGGCCTCGCAGAAGGAGGGGAAGAAAATGGCAACACCACCAGAATATTGCC-CTCCCTCCGGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTACCAGAGGGTGAC--TCTGAGGGCCCACCCTGCTCT--CTGGGACAGTCAAGGGATGAAGTCTCTGAGGGAGTGGAGGGGAAGACAATCCCTGGAATACTGATTAGGGGTTCCCTTTGACCCC-ACAGCAGCCTTGGGCACCAGGACTTTTCCCCTCAGGCCTTGTTCTCTGCCTCACACTCAATGTGTGTGGGGGT-----------CTGACTCCAGCTCCTCTGAATTCCT-TGGCCTCCACTCAGG----------TCAGGACCAGAAG---------TCCCTGCT-------CCCCCGCTCAGAGACTAGAACTTTCCAAGGAAT---AGATTATCCTAGGTGCCTGTGTCCAGGCTAG-TGTCTGGGTTCTGTGCTCCTTTCCCCACCCCAGGTGTCCTGTACATTCTCAAGATGGCCACATGGGTGCTGCTGGGGTGTCCCATGAGAGATGCAAAGTGCCTGAGTTTTCTGACTCTTCCTTTCAGA-CCACCCCA-------AGACACACGTGACCTACCACCCTGTCTCTGAACACGAGGCCACCCTGAGGTGCT-GGGCCCTGGTCTTCTATCCTGCGGAGATCACATTGACCTGGCAGTGGGATGGGGAAGACCAGACCCAGGACATGGAGCTCCTGGAGACCAGGCCCGCAGGGG---ATGGAACCTTCCAGAAGTGGGTGGCTGTGGTGGTGCCTTCTGCAGAGGACTAGAGATTCACATGCCATGTGCAGCATGAGGGTCTGCCCAAGCCCCTCACCCTGAGATGGGGTAAGGAGGGAGATGGGAG--GA-TCATGTCTCTT---AGGGAAAGCAGGAGCCCCTCTGGAGACCTTTAGCAG-------------T--------CTGGGGCCTGGGGGTCA-GAACCCTC--ACATTCCCCTACTTTCCCAGAGCCGTCTCTCCAG----CCCACCATC----CCCATCGTGGGCATCATTGCTGGCCTGGTTGTCCTTGCAGCTGTCGTCACTGGAGCTGTGGTCGCTGCTGTGCTATGGAGGAAGAAGAGCTC
i colAng1.NW_012115577v1   I 66863 C 0
s calJac3.chr4             30307760 1067 + 171630274 --TGGCCTTGCAGAAGGAGGGGATGAAAATGGGACCAACACTAGAGTATAACC-CTCCCTCCGGTCCTGAGGGAGAGAAATTCTCCTGGGTTTCCAGATACTGTACCAGAGAGTGAC--TGTGAGGG------CTGTTCT--CTGATACAATTAAGGGTTGCAGTCTCTGAGGGAAAGGAGGGGAAGTCAATCACTGGAATACTAATCAGGGGTCCCCTGTGACCCC-ACAGCAGCACTGGGCACCAGGA-TTTTCCTCTTCTGCCTTGTCCTCTGCCTCACACTCAATGTGTGCGGGGGT-----------CTGACTCCAGCTTCTCTGAGTCCCT-CGGCCTCCACTCAGA----------TCAGGACCAGAAG---------TCCCTGTT--------CCCCACTCAGAGACTAGAGCTTTCCAAGGAACAGGACATTATTCCAGGTGCCTGTGTGCAGGCTGG-TGTCTGGGTTCTGTGCTCCCTTCCCCACCCCAGGTGTCCTGTCCATTCTCACGATGGTCACATGGGTGCTGCAGCAGTGTCCCATGAGAGATGCAAGATGTCTGAATTTTCTGACTCTCCCCTTCAGA-GCCCCCCA-------AGACAGACGTGAGCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGGCCCTCGGCTTCTACCCTGCGGAGATCACACTGATCTGGCAGTGGGATGGGGAGGACCAGATCCAGGACATGGAGCTCATAGAAACCAGGCCGGCAGGGG---ATGTAACCTTCCAGAAGTGGGCTGCTGTGGTGGTGCTTTCTGGAGAGGAGCACAGATACACATGCCATGTGCAGCATGAGGGGCTGCCTGAGCCCCTCATCCTGAGGTGGGGTAAGGAGGGAGATGGGGG--TG-TCAAGTCTCTT---AGGAAAAGCAGGAGCCCCTCTGGAGACCTTTAGCAGGGTTgggcctggggcctggggcctggggcct-gggATCAGGGCCCCTC--ACCTTCTCCTCCTTTCCCAGAGCCGTCTTCCCAG----CCCACCATC----CCCATCATGGGCATCGTTTCTGGCCTGGTTGTCCTCGGAGCTGTAGTCACTAGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAGAGCTC
i calJac3.chr4             C 0 I 187
s saiBol1.JH378341           124829 1071 +    515838 --TGGCCTTGCAGAAGGAGGGGCGGAAAATGGGACCAACACTGGAATATTGTC-CTCCCTTCGGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTTCCAGAGAGTGAA--TATGAGGGCCTGCCCTGTTCT--CTGATACAATTAAGGGTTGCAGTCTCTGAGGGAAAGGAGGGGAA-TCAATCCCTGGAATACTGATCAGTGGTTTCCTGTGACCCC-ACAGCAGTGTTGGGCACCAGGA-TTTTTCTCTCCTGCCTTGTCCTCTGCCTCACACTCAATGTGTGCGGGGGCAGGCGGGGGCGTTGACTCCAGCTCCTTTGAGTCCCT-TGGCCTCCACTCAGA----------TCAGGATCAGAAG---------TCCCGGAT--------CCCCCCT--GAGACTAGAACTTTCCAAGGAACAGGACATTATCTCAGGTGCCTGTGTCCAGGCTGG-TGTCTCTGTTCTGTGCTCCCTTCCCTACCCCAGGTGTCCTGTCCATTCTCAGGATGGTCACATGGGAGCTGCTGGAGTGTCCCATGAGAGATGCAAGATGTATGAATTTTCTGACTCTTCCCTTCAGA-GCCCCCCA-------AGACACACGTGAGCCACCACCCCATTTCTGACCGTGAGGCCACCCTGAGGTGCT-GGGTCCTGGGCTTCTACCCTGCGGAGATCACAGTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACATGGAGCTCATAGAAACAAGGCCTGCAGGGA---ATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACATGCCATGTGCAGCACGAGGGGCTGCCCGAGCCCCTCACCCTGAGATGGGGTAAGGAGGGAA--TGGGG--TG-TCATGTCTCTT---AAGGAAACCAGGAGACCCTCTGGAGACCTTTAGCAGGGT------TGGGGCTCGGGG-CTAGGACCT-GGGATCAGGGCCCCTC--ACCTTCTCCTCCTTTCCCAGAGCCGTCTTCCCAG----CCCACCATC----CCCATCGTGGGCATCGTTGCTGGCCTGGCTGTCCTTGGAGCTGTAGTCACCGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAGAGCTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     592999 1049 -   1771730 --TGGCCTTGCAGAAGGAAGGGAGGAAAATGGGACCAACACTAGAATATCACC-CGCCCTCCGATCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATTCTGTACCAGAGAGTGAC--TCTGAGGGCCTGCACTGT---------TACAATTAAGGGTTGCAGTCTCTGAGGGAAAGGAGGGGAAGTCAATCCTTGGAATACTGATCAGGGGTTCCCTGTGAGCCC-ACAGCAGCGTTGGGCACCAGGA-TTTTCCTCTCCTGCCTTGTCCTCTGCCCCACACTCAGTGTGTGCGTGGTT-----------CTGACTCCAGCTCCTCTGAGTCCCT-TGGCCTCCACTAAGA----------TCAGGAACAGAAG---------TCCCTGTT--------CCCCACTCAGAGACTAGAACTTTCCAAGGAATAGGAGATTATTCCAAGTGCCTGTGTCCAGGCTGC-TGTCTGGGTTCCGTGCTCCCTTCCCCACCCCAGGTGTCCTGTCCATTCTCAGGATGATCACATGAGTGCTGCTGGGGTGTCCCAAGAGAGATGCAAAGTGTCTTTAGTTTCTGACTCTTCCCTTCAGA-GCCCCCCA-------AGACACACGTGACCCACCACCCCGTCTCTGACCATGAGGCCACCCTGAGGTGCT-GGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACATGGAGCTTGTGGAGACCAGGCCCGCAGGGG---ATGGAAACTTCCAGAAGTGGGCAGCTGTGGTGGTGCTTTCTGGAGAGGAGCAGAGATACACATGCCATGTGCAGCACGAGGGGTTGCCGGAGCCCCTCACCCCGAGATGGGGTAAGGAGGGGA--TGGGG--TG-TCATGTCTGTT---AGGGAAAGCAGGAGCCATTCTGCAACCTTTCAGCACGGT------TGGGG--------TTGGGTCCTGGGGGTGCGGGACCCTC--ACCTTCCCCTCCTTTCCCAGAGCCGTCTTCCCAG----CCCACCATC----CCCATCGTGGGCATCATTGCTGGCCTGGCTGTCCTTGGAGCTG-AGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAGAGCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     229146 1040 -    383796 --TGGCCGTGCAGAAGGAGGGGAGGAAAATGGGACCAATATTAGAATATCGCC-CTCCCTCCGGTCCTGAGGGAGAGGAATCCTCCTGGGTTTCCAGATCCTGTACCAGAGAGTGAC--TTTGAGGGCCTGCCCTGTTCT--CTGATACAATTAAGGGCTGCAGTCTCTGAGGGAAAGGAGGGGAAGTCAATCCCTGG-------ATCAGGGATTTCCTGTGATCCC-ACAGCAGCGTTGGACACCAGGA-TTTTCCTCTCCTGCCTTGTCCTCTGCCTCACATTCAATGTGTGCGGGAGT-----------CTGACTCCATCTCCTCTGAGTCCCT-TGGCCTCCACTCAGA----------TCAGGACCAGAAG---------CCCCTGTT--------CCCCACTCAGAGACTAGAACTTTCCAAGGAATAAGAGATTATCCCAGGTGTCTGTGTCCAGGCTGG-TGTCTGGGTTCTG-------TTCTCCACACCAGGTGTCCTGTCCATTCTCAGGATGATCACGTGGGTGCTCCTGGGGTGTCCCATGAGAGATGCAAAGTGCCTGAATTTTCTGACTCTTCCCTTCAGT-GCCCCCCA-------AGACACATATGACCCACCATCCCATCTCTGACCATGAGGCCACCCTGAGGTGCT-GGGCCCTGGGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACATGGAGCTTGTGGAGACCAGGCCCGCAGGGG---ATGGAAACTTCCAGAAGTGGGCGGCTGTGATGGTGCCTTCTGGAGAGGAGCAGAGATACACATGCCATGTGCAGCACGAGGGGCTGCCCGAGCCCCTCACCCTGAGATGGGGTAAGGAGGGGA--TGGGG--TG-TCATGTCTCTT---AGGGAAAGCAGGAGCCCCTCTGCAGCCCTTCAGCAGGGT------CAGGG--------CTGGAGCCTGGGGATCAGGGCTCCTC--ACCCTCCCCTCCTTTCCCAGAGCCGTCTTCCCAG----CCCACCATC----CCCATCGTGGGCATCATTGCTGGCCTGGCTGTCCTTGGAGCTGTATTCATT---GCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAGAGCTC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17364878  993 -  18854210 --TCACCATCCACAAGGAGGGGAGGAAAATGGGCCCAACACTAGAATATCGCC-TTACCTCTGGTC----AGAGTAGGAAGAC-------------GCTCCCATACCAG-------------------------TGTCCT--CTGGGACAGTTAAGGAATGAAATCTCCCAGGAAA-ACAGAGGGACAGAGTCCCTGAAATATTGATCATTGATTTTCTCTGACCCT-GCAGTAG----------------TTTTTCTCTCAGGCCTTGTTCTCTGCCCCACTC---ATTTGTTTGGAAGT-----------CTGATTCAAGTCCTTCCG-GTCACT-CAGCCTCCACTCAGG----------TCAGGA-----------------CCCTGTT-------CTCCTCTTTGGAGACAGGAAATTTC-AAGGAACAGGAGATCATCCCAGACCCCTGAGTCCAGGCTGG-TGTCTGAATTTCGCACTCGCTTCCACACCCCAGTTGTCCTGTCCATTCTCAGGAT-CTCACATGAGCACTGCTGGAGTGTCCCGTGAGGGATACAAAGTGCCTGAATCTTGTGACTCTTTCCTTCAGA-TCCGCCAA-------AGACTCGTGTGACCCACCACCTCACCTCTGACTATGAGGCCACCCTGAGGTGCT-GGGCCCTGGGCTTCTACCCTGCGGTGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACATGGAGCTTGTAGAGACCAGGCCTTCCGGGGACAACAGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCACAGATATACGTGCCATGTGCAGCATGAGGGACTGGGGGAGCCCCTCACCCTAAGATGGGGTAAGAAGGGATGTGGGGA--TG-TCATGTCTCTTGTCAGGGAAAGTAGGAGCCTTTCTG-AGTCCTTTAGCATGGT------CAGGG--------CTGAGGGCT-GGAATAA-GGCCTCTC--ACCTTCATGTCCTTTTCCAGAGCCATCTTCCCAG----CCCAGCACC----CCTGTGGTGGGCATCATTGCTGGCCTGGTTCTCCTTGGAACTGTGCTCACTGGAGCTGTGGTTGCCACTGTGATGTGGAGGAAGAAGAGCTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58016995 1068 -  94987271 GGGAGCATACTTCCATGGGGCAAGGAAAATGGGAACA--GCTGAAATACTACCACTCTTTTGCTTCCAGAGTTGGAAGAGAACTCCTGGTTTTCCTGACCCAGCACCAGAGAGTAGCTGTCCCAGGGCTCACCCTTCTTT---CAGGACAGTTCAG------AGTCTCTCAAGAGAATAA--GATAGAAGATTCCTGAAATAACCAATAGCCACTTCCTTCAACCTC--CAGCC-CGTTGTGAACTATGGCCT---CCCTTATGCTAGGTTCTCTGC-TCACACCCAATATTTTTGGAGGT-----------CTGACTTAAGTGGTGCTGAGTCTCTATGCCCTCCACCCAGATACCCTCTTTTCATGGTTGAAAACTTGGGAGTTTTCTACTTCGGATTGCCTTACTATAAAATTAGAATTTTCCAAGGAAT---GGAGTATACT-GATGCCTGGGTGTAGACTACTTGTTTGGGGTTTG--CATCCCTTCTCATCTTGATTCTCCTGTTCATTGCCAGGACAGGGGCACAAATACTGCTTAAA--TCCCCAAAACAATGCACAATGCTTAAATTTACCAAA-CTTTTTTTCAGA-CCCCCCCCCCCACAAAGGTACATGTGAGCCATCACCCCAGACCTGAAGGTGAAGTCACCCTGAGGTGCT-GGGCCCTGGACTGCTTCCCTGCTGACGTCATGCTGACCTGGCAGAGGGATGAGGAGGACCTGACCCAGGTCATGGACCTTGTGGAGACCAGGCCTGCTGGGG---ATGGAACCTTCCAGAAGTGGGCAGCTCTGGTGGTACCTTCTGG-GAGGAGCAGAAATATACGTGCTGTGTGGAGCATGAGGGACTGCCTGAGCATCTCACCCTGAGATGGGGTAAGGAGAAGTTTGAGCACAGA-GCCTGT-TATT---AAGGAGAG----------------ACTCCTGAGTAGAGT------CTGTG--------CTAGGAGCTGGGGATTA-GATCCCTTGAACTCTTCCCTCTCTTTCCCTTTCTCTCTTCCTAGAACCCCCACCTCCTTGGCCTGTGGTTGGAATAACTGTTGGTGTAGTTCTCCTTGGGGTTATCATCATTGGAGCACTGATTGCCATTGTGAAGACGAGGAAGAAGAGAGC
i mm10.chr17               C 0 C 0
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444   35 +   2037526 I

a score=1065948.000000
s hg38.chr6_GL000254v2_alt  1352755 155 +   4827813 AGGTGGGGAAGGG--GTGAGGAGTCGGGTTTGAGTTTTCTTGTCCCACTGGGGGTTTCAAGCTCCAGGTAGAAATGTGT------TCTGCCTGGTTACCGGGAAGCACCATCCACATTCATGGGCCTACCCAGCCTGGG-CCCTGTGTGCCAGCACTTACTCTT
s panTro5.chr6             30223614 155 + 175400573 AGGTGGGGAAGGG--GTGAGGAGTGGGGTTTGAGTTTTCTTGTCCCACTGGGGGTTTCAAGCTCCAGGCAGAAATGTGT------TCTGCCTGGTTACCGGGAAGCACCATCCACACTCATGGGCCTACCCAGCCTTGG-CCCTGTGTGCCAGCACTTACTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30453798 154 + 173848474 AGA-GGGGAAGGG--GTGAGGAGTGGGGTTCGAGTTTTCTTGTCCCACTGGGGGTTTCAAGCTCCAGGTAGAAATGTGT------TCTGCCTGGTTACCGGGAAGCACCATCCACACTCATGGGCCTACCCAGCCTTGG-CCCTGTGTGCCAGCACTTACTCTT
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74832824 155 + 122973662 AGGTGGGGAAGGG--GGGAGGAGTGGGGTCTGAGTTTTCTTGTCCCACTGGGGGTTTCAAGCCCCAGGTAGTAGTGTGT------CCTGCCTGGTTACTGGGAAGCACCATCCACACTCATGGGCCTACCCAGCCTGGG-CCCTGTGTGCCAGCACTTACTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30618124 157 + 172585720 AGGTAAAGAAGGGGAGTGAGGAGTGGAGTCTGAGATTTCTTGTCTCACTGAGGGTTTCAAGCCCCAGGCAGAAGTGTGC------CCTGCCTGGTTACTGGGACGCACCATCCACACTCATGGGCCGACCCAGCCTGGG-CCCTGTGTGCCAGCACCTACTCTT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     164049 152 +   1495729 AGGCGAGGAAGGG--GTGACAGCTGGGGTCTGAGATTTCTTGTCCCACTGAGGGTTCCAAGCCCCAGGTAGAAGTG---------CCCTCCCGGTTACTGAGAAGCACCATCCACACTTATGGGCTGACCCAGCCTGGG-CCCTGTGTGCCAGCACCTACTCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     330928 154 -    863181 AGGTGAGGAAGGG--GTGACAGGTGGGGTCTGAGATTTCTTGTCTCACTGAGGGTTCCAAGCCCCAGGTAGAAATGTG-------CCCTCCCGGTTACTGGGAAGCACCATCCACACTCATGGGCCGACCCAGCCTGGG-CCCTGTGTGCCAGCACCTACTCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29365187 154 -  71996105 AGGTGAGGAAGGG--GTGACAGGTGGGGTCTGAGATTTCTTGTCTCACTGAGGGTTCCAAGCCCCAGGTAGAAGTGTG-------CCCTCCCAGTTACTGGGAAGCACCATCCACACTCATGGGCCAACCCAGCCTGGG-CCCTGTGTGCCAGCACCTACTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     142722 152 -    735854 AGGTGAGGAAGGG--GTGACAGGTGGGGTCTGAGATTTCTTGTCTCACTGAGGGTTTCAAGCCCCAGGTAGAA--GTG-------CCCTCCCGGTTACTGGGAAGCACCATCCACACTCATGGGCTGACCCAGCCTGGG-CCCTGTGTGCCAGCACCTACTCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     111190 152 -   1829203 AGGTGAGGAAGGG--GTGACGGGTGGGGTCTGAGATTTCTTGTCTCACTGACGGTTCCAAGCCCCAGGTAGAAGTG---------CCCTCCCGGTTACTGGGAAGCACCATCCACACTCATGGGCTGACCCAGCCTGGG-CCCTGTGTGCCAGCACCTACTCTT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           125900 155 +    515838 AGGTGAGGAAGGG--GTGAGGAGTGGGGTCTGAGATTTCTTGTCCCACTGAGGATTCCAAGCCCCAGGTAGAATTGTGT------CCTGCCTGGTTACTGGGAAGCACCATCTACACTCATGAGCCGACCCAGCCTGGG-CCCTGTGTGCCAGCACTTACTCTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     594048 155 -   1771730 AGGTGAGGAAGGG--GTGAGGAGTGGGGTCTGAGATTTCTTGTCCCACTGAGGGTTCCAAGCCCCAGGTAGAAGTGTGT------CCTGCCTGGTTACTGGGAAGCATCATCCACACTCATGAGCTGACCCAGCCTGGG-CCCTGTGTGCCAGCACTTACTCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     230186 155 -    383796 AGGTGAGGAAGGG--GTGAGGAGTGGGGTCTGAGATTTCTTGTCCCACTGAGGGTTCGAAGCCCCAGGTAGAAGTGTGC------CCTGCCTGGTTACTGGGAAGCATCATCCACACTCATGAGCCTTCCCAGCCTGGG-CCCTGTGTGCCAGCACTTACTCTT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17365871 153 -  18854210 AGGTAGGGAAAGG--GTGAGTGGCAGGGTCTGCATTTTCTTGTCCCACTGGGGTTTC--AACTCCAGGTAGCAGGGTGC------CCCGCCCCATTA-TGGGAAGTTCCATCCACACACACCTGCTTAGCCAGCTGGGGATCCTGGGTGCCAACACTTACTCTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58018063 146 -  94987271 AGGTAGGGAAGGG---------ATTGTATCTGAGGGTTTACAT--------AGATTTGAAGCCCTACATGGAAATGTGTTCATTGCTCATTTTATTACATTGAGAC-TCATCTATGTATAAGTGCTTACCCAACCCAGGACTCTGTATAGCACCTTttgttgtt
i mm10.chr17               C 0 I 213
e calJac3.chr4             30308827 187 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444  35 +   2037526 I

a score=418855.000000
s hg38.chr6_GL000254v2_alt  1352910 66 +   4827813 TTGT-AAGCACCTGTGACAATGAAGGACAGATTTCTCACCTTGATGATTGTAGTGATGGGGATCTGA
s panTro5.chr6             30223769 66 + 175400573 TTGT-AAGCACCTGTGACAATGAAGGACACATTTATCACCTTGATGATTGTAGTGATGGGGATCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30453952 66 + 173848474 TTGT-AAGCACCTGTGACAATGAAGGACAGATTTCTCACCTTGATGATTGTAGTGATGGGGATCTGA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74832979 66 + 122973662 TTGT-AAGCACCTGTGACAATGAAGGACAGATTTATCACCTTGATGATTGTAGTGATGGGGACCTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30618281 66 + 172585720 TTGTAAAGCACCTGTTACAATGAAGGACAGATAGATCACCTCGATTTCGGTGGTGAT-GGGACCTGA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     164201 67 +   1495729 TTGTAAAGCACCTGTGACAATGAAGGACAGATTTATCACGTTGATGATTGTGGTGATGGGGACCTGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     331082 67 -    863181 TTGTAAAGCACCTGTTACAATGAAGGACAGATTTATCACGTTGATGACTGTGGTGATGGGGACCTGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29365341 67 -  71996105 TTGTAAAGCACCTGTGACAGTGAAGGACAGATTTATCACCTTGATGATTGTAGTGATGGGGACCTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     142874 66 -    735854 TTGTAAAGCACCTGTGACAGTGAAAGACAGATTTATCACGTTGATGACTGTGGTGAT-GGGACCTGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     111342 67 -   1829203 TTGTAAAGCACCTGTGACAGTGAAGGACAGATTTATCACCTTGATGATTATAGTGATGGGGACCTGA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           126055 67 +    515838 GTGTAAAGCACCTGTGACAATGAAGGACAGATGTATCACCTTGATGATTGTGGTGATGGGGACCTGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     594203 67 -   1771730 TTGTAAAGCACCTGTGACAATGAAGGACAGATGTATCGCCTTCATGATTGTGGTGATGTCAACCTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     230341 67 -    383796 GTGTAAAACACCTGTGACAATGAAGGACAGATGTATCACCCTGATGATTGTGGTGATGGGGACCTGA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         17366024 60 -  18854210 TTGTATAGCACATGTGACAATGAAGGACAGAGTT------TTAATG-TAATGATTATGGGAACCTAA
i otoGar3.GL873550         C 0 N 0
e mm10.chr17               58018209 213 -  94987271 I
e calJac3.chr4             30308827 187 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=1040449.000000
s hg38.chr6_GL000254v2_alt  1352976 155 +   4827813 CCCCAGTAATCACAGGT--CAGGGGAAGGTCCCTGCTGAGGACAGACC-TTAGGAGGGCAGTTGGTCCAGGACCCACA-------TCTGCTTTCCTTGTTTCTCCTGATCCTGCCCTTGGTTTGCAGTCACACATTTCTGGAAACTTCTCGAGGTTCCAAGACTA
s panTro5.chr6             30223835 155 + 175400573 CCCCAGTAATCACAGGT--GAGGGGAAGGTCCCTGCTGAGGACAGACC-TTAGGAGGGCAGTTGGTCCAGGACCCACA-------TCTGCTTTCCTTGTTTTTCCTGATCCTGCCCTTGGTTTGCAGTCACACATTTCTGGAAACTTCTCGAGGGTCCAAGACTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30454018 155 + 173848474 CCCCAGTAATCACAGGT--GAGGGGAAGGTCCCTGCTGAGGACAGACC-TTAGGAGGGCAGTTGGTCCAGGACCCACA-------TCTGCTTTCCTTGTTTTTCCTGATCCTGCCCTTGGTTTGCAGTCACACATTTCTGGAAACTTCTCGAGGGTCCAAGACTA
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74833045 155 + 122973662 CCCCAGCAGTCACAGGT--CAGGGGAAGGTCCCTGCTGAGGACAGACC-TTAGGAGGGCAGTTGGTCCAGGACCCACA-------TCTGCTTTCCTTGTTTTTCCTGATCCTGCCCTTGGTTTGCAGTCACACATTTCTGGAAACTTCTCGAGGGTCCAAGACTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30618347 157 + 172585720 TCCCAGCAGTCACAAGTCACAAGGGAAGGTCCCTGCTGAGGACAGACC-TCAGGAGGGCAGTTGGTCCAGGATCCACA-------CCTGCTTTCTTCATGTTTCCTGATCCCGCCCTGGGGCTGCAGTCACACATTTCTGGAAACTTCTCTGGGGTCCAAGACTA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     164268 155 +   1495729 TCCCAGCAGTCACAGGT--CAAGGGAAGGCTCCTGCTGAGGACAGACC-TTAGGAGAGCAGTTGGTCCCAGACCTACA-------TCTGCTTTCCTTGTTTTTCCTGATCCTGCCCTTGGTCTGCAGTCACACATTTCTGGAAACTTCTCGAGGGTCCAAGACTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     331149 155 -    863181 TCCCAGCAGTCACAGGT--CAGGGGAAGGTCCCTGCTGAGGACAGACC-TTAGGAGGGCAGTTGGTCCCAGACCTACA-------TCTGCTTTCCTTATTTTTCCTGCTCCTGCCCTTGGTCTGCAGTCACACATTTCTGGAAACTTCTCGAGGGTCCAAGACTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29365408 155 -  71996105 TCCCAGCAGTCACAGGT--CAGGGGAAGGTCGCTGCTGAGGACAGACC-TTAGGAGGGCAGTTGGTCCCAGACCTACA-------TCTGCTTTCCTTGTTTTTCCTGATCCTGCCCGTGGTCTGCAGTCACACGTTTCTGGAAACTTCTCGAGGGTCCTAGACTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     142940 155 -    735854 TCCCAGCAGTCACAGGT--CAAGGGAAGGCCCCTGCTGAGGACAGACC-TTAGGAGGGCAGTTGGTCCCAGACCTACA-------TCTGCTTTCCTTGTTTTTCCTGATCCTGCCCTTGGTCTGCAATCACACATTTCTGGAAACTTCTCGAGGGTCCAAGACTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     111409 155 -   1829203 TCCCAGCAGTCACAGGT--CAGGGGAAGGCCCCTGCTGAGGACAGACC-TTAGGAGGGCAGTTGGTCCCAGACCTACA-------TCTGCTTTCCTCGGTTTTTCTGATCCTGCCCTTGGTCTGCAGTCACACATTTCTGGAAACTTCTCGAGGGTCCAAGACTA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           126122 157 +    515838 TCCCAGCAGTCACAGGTCACAAGGGAACGTCCCTGCTGAGGACAGTCC-TTAGGAGGGCAGTTGGTCCAGGACCCACA-------CCTGCTTTCCTTGTTTTTCCTGATCCTTCTCTGAGTCTGCAGTCACACATTCCTAAAAACTTCTCTGGGTTTCAAGACTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     594270 156 -   1771730 TCCCAGCAGTCACAGGTCACAAGGGAACGTCCCTGCTGAGGACAGTCC-TCAGGAGGGCAGTTGGTCCAGCACCCACA-------CCTGCTTTCC-TGTTTTTCCTGATACTTCCCTGAGTCTGCAGTCACACATTTCTGGAAACTTCTCTGGGGTCCAAGACTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     230408 157 -    383796 TCCCAGCAGTCACAGGTCACAAGGGAAGTTCCCTGCTGAGGACAGTCC-TTAGGAGGGCAGTTGGTCCAGGACCCACA-------CCTGCTTTCCTTGTTTTTCCTGATCCTTCCCTGAGTCTGCAGTTACACATTTCTGGAAAGTTCTCTGAGGTCCAAGACTA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           211931 153 +  18854210 ccctagcagtcacA-----GAGGGGAAGGGCCCTACAGAGCACAGACCTTTAAAAGGGCATTTAGTCCAATCCCCACACATCTCCTTTCCTTTCTTTATGTGTCTGAATTCTGTCCTGAGTCTGCAGC----CTGTTTTGGAAATCCC---AGGGTCCAAAACTA
i otoGar3.GL873550         N 0 C 0
e mm10.chr17               58018209 213 -  94987271 I
e calJac3.chr4             30308827 187 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444  35 +   2037526 I

a score=196977.000000
s hg38.chr6_GL000254v2_alt  1353131 25 +   4827813 GGAGGTTCCTCTAGGACCTCATGGC
s panTro5.chr6             30223990 25 + 175400573 GGAGGTTCCTCTAGGACCTCATGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30454173 25 + 173848474 GGAGGTTCCTCTAGGACCTCATGGC
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74833200 25 + 122973662 GGAAGTTCTTCTAGGACCTCATGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30618504 25 + 172585720 GGAGATTCCTCTAGGACCTTATGGC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     164423 25 +   1495729 GGAGGTTCCTCTAGGACCTCATGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     331304 25 -    863181 GGAGGTTTCTCTAGGACCTCATGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29365563 25 -  71996105 GGGGATTCCTCTAGGACCTCATGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     143095 25 -    735854 GGAGGTTCCTCTAGGACCTCATGGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     111564 25 -   1829203 GGAGGTTCCTCTAGGACCTCATGGC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           126279 25 +    515838 GAAGGTTCCTCTAGGACCTCATGGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     594426 25 -   1771730 GGAGGTTTCTCTAGGACCTCATGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     230565 25 -    383796 GGAGATTCCTCTAGCACCTCATGGC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           212084 25 +  18854210 TCCAATTCCTCTAATACCTCTTGGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58018422 25 -  94987271 GGGTGTTCCTCTAGGACATCATCAT
i mm10.chr17               I 213 C 0
e calJac3.chr4             30308827 187 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I
e gorGor5.CYUI01015528v1     163444 35 +   2037526 I

a score=164041.000000
s hg38.chr6_GL000254v2_alt  1353156 22 +   4827813 CCTGCTACCTTCCTGGCCTCTC
s panTro5.chr6             30224015 22 + 175400573 TCTGCTACCCTCCTGGCCTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30454198 22 + 173848474 TCTGCTACCCTCCTGGCCTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     163479 22 +   2037526 CCTGCTACCTTCCTGGCCTCTC
i gorGor5.CYUI01015528v1   I 35 C 0
s nomLeu3.chr1a            74833225 22 + 122973662 CCTGCAACCTTTCTGGCCTCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30618529 22 + 172585720 CCTGGTCCCTTTCTGATATCTC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     164448 22 +   1495729 CCTGCCACCTTTCTGGCCTCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     331329 22 -    863181 CCTGCCACCTTTCTGACCTCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29365588 22 -  71996105 CCTGCCACCTTTCTGGCCTCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     143120 22 -    735854 CCTGCCACCTTTCTGACCTCTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     111589 22 -   1829203 CCTGCCACCTTTCTGGCCTCTC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           126304 22 +    515838 CTTGCCACCTTTCTGAGCCCTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     594451 22 -   1771730 CCTGCCACCTTTCTGACCCCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     230590 22 -    383796 CCTGCCACCTTTCAGACCCCTC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           212109 22 +  18854210 TCCAAATCCTCCCTGGCTTCTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58018447 22 -  94987271 CCTGCATCCTTCCCAGTCATTC
i mm10.chr17               C 0 I 2227
e calJac3.chr4             30308827 187 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=1096355.000000
s hg38.chr6_GL000254v2_alt  1353178 134 +   4827813 ACAGGACGTTTTCTTCCCGCAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGA---AGGAGGCTGATCCCTGAGATCCTTGGGATATTGTGGTTGGGAGCCCATGGGGGAGCTCACCCACCCCAC
s panTro5.chr6             30224037 134 + 175400573 ACAGGACGTTTTCTTCCCGCAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGA---AGGAGGCTGATCCCTGAGACCCTTGGGATATTGTGTTTGGGAGCCCATGGGGGAGCTCACCCACCCCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30454220 134 + 173848474 ACAGGACGTTTTCTTCCCGCAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGA---AGGAGGCTGATCCCTGAGACCCTTGGGATATTGTGTTTGGGAGCCCATGGGGGAGCTCACCCACCCCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     163501 134 +   2037526 ACAGGACGTTTTCTTCCCGCAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGA---AGGAGGCTGATCCCTGAGATTCTTGGGATATTGTGGTTGGGAGCCCATGGGGGAGCTCACCCACCCCAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74833247 134 + 122973662 ACAGGACGTTTTCTTCCCATAGATAGAGAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGA---AGGAGGCTGATCCCTGAGATCCTTGGGAAACTGTGTTTGGGAGCCCATAGGGGAACTCACCCAGCCCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30618551 134 + 172585720 AAAGGACATTTTCTTCCCACAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGA---AGGAGGCTGATCCCCGAGATCCTTGGGATATTGTGGTTGGGAGCCCATGGGGGAGCTCACCCAGCCCAC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     164470 134 +   1495729 ACAGGACATTTTCTTCCCACAGATAGAAAAGGAGGAAGCTATTCTCAGGCTGCAAGTAAGTATGA---AGGAGGCTGATCCCTGAAATCCTTGGGATATTGTGGTCGGGAGCCCATGGGGGAGCTCACCCAGCCCAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     331351 134 -    863181 ACAGGACATTTTCTTCCAACAGATAGAAAAGGAGGAAGCTACTCTCAGGCTGCAAGTAAGTATGA---AGGGGGCTGATCCCTGAAATCCTTGGGATATTGTGGTCGGGAGCCCATGGGGGAGCTCACCCAGCCCAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29365610 134 -  71996105 ACAGGACATTTTCTTCCCAAAGACAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGA---AGGGGGCTGATTCCTGAAATCCTTGGGATATTGTGGTCGGGAGACCATGGGGGAGCTCACCCAGCCCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     143142 134 -    735854 AAAGGACATTTTCTTCCCACAGATAGAAAAGGAGGGATCTACTCTCAGGCTGGAAGTAAGTATGA---AGGAGGCTGATCCCTGAAATCCTTGGGATATTGTGGTCGGGAGTCCATGGGGGAGCTCACTAACCCCAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     111611 134 -   1829203 ACAGGACATTTTCTTCCAACAGATAGAAAAGGAGGAAGCTACTCTCAGGCTGCAAGTAAGTATGA---AGGGGGCTGATCCCTGAAATCCTTGGGATGTTGTGGTCGGGAGCCCATGGGGGAGCTCACCCAGCCCAC
i colAng1.NW_012115577v1   C 0 I 868
s saiBol1.JH378341           126326 134 +    515838 ACAGAATATTTTCTTCCCACAGATAAAAAAGGAGGAAGCTACTCTCAGGCTGCAAGTAAGTATGA---AGGAGTCTGATCCCTGAGATCATTGGGATATTGTGGTCAGGAGCCCATGCGGGAGCTCACCCAGCCCGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     594473 134 -   1771730 ACAGGATATTTTCTTCCCACAGATAAAAAACGAGGAAGCTACTCTCAGGCTGCAAGTAAGTATGA---AGGAGGCTAATCCCTGAGATCGTTGGGATATTGTGGTCGGGAGCTCATGGAGGAGCTCACACAGCCAGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     230612 134 -    383796 ACAGTATATTTTCTTCCCACAGATAAAAAAGGAGGGAGCTACTCTCAGGCTGCAAGTAAGTATGA---AGGAGGCTGATCCCAGAGATCGTTGGGATATTGTGGTCGGGAGCCCATGAGGGAGCTCACTCAGCCCAC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           212131 137 +  18854210 ACTGGACTTGTTCTTCCCAGAGGTGGAAAAGGTGAGGGTCACAGTCAGGCTGCCAGTAAGTTAGGGTCAAGGGGCTGGTCCCAGAGACCTTTGGGATCATGTAGACAGGAACCCAAGGGATAGGTCACCTATCCCAT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e calJac3.chr4             30308827 187 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=12467.000000
s hg38.chr6_GL000254v2_alt  1353312 2 +   4827813 AA
s panTro5.chr6             30224171 2 + 175400573 AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30454354 2 + 173848474 AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     163635 2 +   2037526 AA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74833381 2 + 122973662 AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30618685 2 + 172585720 AG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     164604 2 +   1495729 AG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     331485 2 -    863181 AG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29365744 2 -  71996105 AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     143276 2 -    735854 AG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     112613 2 -   1829203 AG
i colAng1.NW_012115577v1   I 868 C 0
s saiBol1.JH378341           126460 2 +    515838 AG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     594607 2 -   1771730 AA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     230746 2 -    383796 AA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           212268 2 +  18854210 AA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e calJac3.chr4             30308827 187 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=2632755.000000
s hg38.chr6_GL000254v2_alt  1353314 319 +   4827813 TTCCTCCTCTAGCCACATCTCCTGTGGGATCTGACCAGGTTCTGTTTTTGTTCTACCCCAGGCAGCCAAAGTGCCCAGGGCTCTGATGTGTCTCTCACGGCTTGTAAAGGTGAGACCCTG---------GGGAGGCTGATGTGTGT-GGGTTGTT-GGGGTAACAGTGGATATAGCTGTGCTATGGGGTTTCTTTG-ACTTGG------ATGTAT-TCAGCACATGATGGGCTGTTGAAGGTGTGACCCCTCACTGTGAGTGATATG----AATTTGTTCATGAAT-ATTTTTTCTATAGTGTGAGACAGCTGCCTTGTGTGGGACTGAGAG--GCAAGATTTGT
s panTro5.chr6             30224173 319 + 175400573 TTCCTCCTCTAGCCACATCTCCTGTGGGATCTGACCAGGTTCTGTTTTTGTTCTACCCCAGGCAGCCAAAGTGCCCAGGGCTCTGATGTGTCTCTCACGGCTTGTAAAGGTGAGACCCTG---------GGGAGGCTGATGTGTGT-GGGTTGTT-GGGGTAACAGTGGATATAGCTGTGCTATGGGGTTTCTTTG-ACTTGG------ATGTAT-TCAGCACATGATGGGCTGTTTAAGGTGTGACCCCTCACTGTGAGTGATATG----AATTTGTTCATGAAT-ATTTTTTCTATAGTGTGAGACAGCTGCCTTGTGTGGGACTGAGAG--GCAAGATTTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30454356 319 + 173848474 TTCCTCCTCCAGCCACATCTCCTGTGGGATCTGACCAGGTTCTGTTTTTGTTCTACCCCAGGCAGCCAAAGTGCCCAGGGCTCTGATGTGTCTCTCATGGCTTGTAAAGGTGAGACCCTG---------GGGAGGCTGATGTGTGT-GGGTTGTT-GGGGTAACAGTGGATATAGCTGTGCTATGGGGTTTCTTTG-ACTTGG------ATGTAT-TCAGCACATGATGGGCTGTTTAAGGTGTGACCCCTCACTGTGAGTGATATG----AATTTGTTCATGAAT-ATTTTTTCTATAGTGTGAGACAGCTGCCTTGTGTGGGACTGAGAG--GCAAGAGTTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     163637 325 +   2037526 TTCCTCCTCTAGCCACATGTCCTGTGGGATCTGACCAGGTTCTGTTTTTGTTCTACCCCAGGCAGCCAAAGTGCCCAGGGCTCTGATGTGTCTCTCACGGCTTGTAAAGGTGAGACCCTG---------GGGAGGCTGATGTGTGTGGGGTTGTT-GGGGTAACAGTGGATATAGCTGTGCTAT-GGGTTTCTTTG-ACTTGGATGGTAATGTAT-TCAGCACATGATGGGCTGTTTAAGGTGTGACCCCTCACTGTGAGTGATATG----AATTTGTTCATGAAT-ATTTTTTCTATAGTGTGAGACAGCTGCCTTGTGTGGGACTGAGAG--GCAAGATTTGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74833383 324 + 122973662 TTCCTCCTCTAGCCACATCTCCTGTGGGATCTGACCAGGTTCTGTTTTTGTTCTACCTCAGGTAGCCAAAGTGCCCAGGGCTCTGATGTGTCTCTCACAGCTTGTAAAGGTGAGACCCTG---------GGGAGGCTGATGTGTGT-GGGTTGTTGGGGGTAACAGTGGATATAGCTGTGCTATGGGGTTTCTTTG-ACTTGG------ATGTAT-TGAGCACATGATGGGCTGTTTAAGGTGTGACCCCTCACTGTGAGTGATATGAATCAATTTGTTCATGAAT-ATTTTTTCTACAGTGTGAGACAGCTGCCTTGTGTGGGACTGACAG--GCAAGATTTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30618687 320 + 172585720 TTCCTCCTTTAGTCACATCTCCAGAGGGATCTGACCAGGTCCTGTTTTTGTTCTACTCCAGGCAGTGACAGTGCCCAGGGCTCTGATGTGTCTCTCACGGCTTGTAAAGGTGAGACCCTG---------GGGGGCCTGATGTGTGT-GGGGTGTTGGGGGGAACAGTGGACGCAGCTGTGCTGTGGGGTTTCTTTG-ACTTGG------ATGTAT-TGAGCATGTGATGGGCTGTTTAAAGTGTCACTCCTCACTGTGACGGATGTG----AATTTTTTCATGAAT-ATTTTTTCTATAGTGTGAGACAGCTGCCTTGTGTGGGACTGCGAG--GCAAGATTTGT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     164606 320 +   1495729 TTCCAACTCTAGCCACATCTCCTATGGGATCTGACCAGGTTCTGTTTTTGTTCTACCCCAGGTAGCCAAAGTGCCCAGGGCTCTCATATGTCTCTCAGGGCTTATAAAGGTGAGACCCTG---------GGGGGCCTGATGTGTGT-GGGTTGTTGGGGGTAACAGTGGACATAGCTGTGCTATGGAGTTTCTTTG-ACTTGG------ATGTAT-TGAGCACATGATGGGCTGTTTAAAGTGTGACCCCTCGCTGTGACTGATATG----AATTTGTTCATGAAT-ATTTTTTCTATAGTGTGAGACAGCTGCCTTGTGTGGGACTGAGAG--GCAAGATTTGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     331487 320 -    863181 TTCCTCCTCTAGCTACATCTCCTGTGGGCTCTGACCAGGTTCTGTTTTTGTTCTACCCCAGATAGCCAAAGTGCCCAGGGCTCTCGTATGTCTGTCACAGCTTATAAAGGTGAGACCCTG---------GGGGGCCTGATGTGTGC-AGGGTGTTGGGGGTAACAGTGGACATAGCTGTGCTATGGGATTTCTTTG-ACTTGG------ATGTAT-TGAGCACGTGATGGGCTGTTTAAAGTGTCACTCCTCACTGTGACGGATGTG----AATTTTTTCATGAAT-ATGTTTTCTATAGTGTGAGACAGCTGCCTTGTGTGGGACTGAGAG--GTAAGATTTGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29365746 320 -  71996105 TTCCAACTATAGCCACATCTCCTGTGGGATCTGACCAGTTTCTGTTTCTGTTCTACCCCAGGTAGCCAAAGTGCCCAGGGCTCTCATATGTCTCTCAAGGCTTATAAAGGTGAGACCTTG---------GGGGGCCTGATGTGTGT-GGGGTGTTGGGTGTAACAGTGGACATAGCTGTGCTGTGGGGTTTCTTTG-ACTTGG------ATGTAT-TGAGTACATGATGGGCTGTTTAAAGTGTGACCCCTCGCTGTGACTGATACG----AATTTGTTCATGAAT-ATTTTTTCTATAGTGTGAGACAGCTGCCTTGTGTGGGACTGAGAG--GCAAGATTTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     143278 320 -    735854 TTCCTCCTCTAGCCACATCTCCTGTGGGATCTGACCAGGTTCTGTTTTTGTTCTACCCCAGGTAGCCAAAGTGCCCAGAGCTCTCATATGTCTCTCACGGCTTATAAAGGTGAGACCCTG---------GGGGGCCTGATGTGTGT-GGGTTGTTGGGAGTAACAGTGGACATAGCTGTGCTATGGAGTTTCTTTG-ACTTGG------ATGTAT-TGAGCACATGATGGGCTGTTTAAAGTGTGACCCCTCACTGTGACTGATATG----AATTTGTTCATGAAT-ATTTTTTCTATAGTGTGAAACAGCCGCCTTGTGTGGGACTGAGAG--GCAAGATTTGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     112615 319 -   1829203 TTCCTCCTCTAGCCACATCTCCTGCGGGCTCGGACCAGGTTCTGTTTTTGTTCTACCCCAGGTAGCCAAAGTGCCCAGGGCTCTCATATGTCTGTCACAGCTTATAAAGGTGAGACCCTG---------GGGGGCCTGATGTGTGT-GGGGTGTTGGGGGGAACAGTGGACGCAGCTGTGCTATGGGATTTCTTTG-ACTTGG------ATGTAT-TGAGCACGTGATGGGCTGTTTAAAGTGTGACCCC-CTCAGTGATTGATATG----AATTTGTTCATGAAT-ATTTTTTCTATAGTGTGAGACAGCCGCCTTGTGTGGGATTGAGGG--GCAAGATTTGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30309014 307 + 171630274 TTCCATGTCTAGCAGCATTTCCTGTAGGCTCTGACCAGGTTCTGTTTTCGTTCTACCCCAGGCAGTGACAGTGCTCAGGGCTCTGATGTGTCTCCCACGGCTTGTAAAGGTGAGACCCCAAG-------GGAAGACTGATGTGTGT-GGGTTTTGGGGGGCAACAGTGGGAACAGCTGTGTTATGGGGTTTCTTTG-ACTGGG------ATGTAT-TGAGCTGGTGATGGGTTGTTTAAAGTGTGAC-------------TGATATA----AATTTGTTAATGAAT-ATTTTTT--ATAGTGTGAGACAGCTGCCTTGCATGGGCCTGAGAG--GCAAGATTTAT
i calJac3.chr4             I 187 I 5120
s saiBol1.JH378341           126462 309 +    515838 TTCCTCCTCTAGCGGCGTTTCCTATAGGCTCTGACCAGGTTCTGTTT------TACCCCAGGCAGCGACAGTGCCCAGGGCTCTGATGTGTCTCTCACGGCTTGTAAAGGTGAGATCCTGGGA-GGGGAGGGGGGCTGATGTGTGT-GGGTTTTTGGGGGGAACAGTGGGAACAGTTGTGTTATGGGGTTTCTTTG-ACTTGG------ATGTAT-TGAGCTGGTGATTAGTTGTTTAAAGTGTGAC-------------TGATAAA----AATTTGTTAATGGAT-TTTTTTTTAATAGTGTGAGACAGGTGCGTTGTGTGGGACTGAGAG--TCAAGATTTAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     594609 311 -   1771730 TTCCTCCTCTAGCGGTATTTCCTGTAGGCTCTGACCGGGTTCTGTGTTTGTTCTACCCCAGGCAGCGACAGTGCCCAGGGCTCTGATGCGTCTCTCACGGCTTGTAAAGGTGAGACCCTGGGGCGGGGTGGCGGGGGGATTGATGT-GGGTTGTTGGGGGAAACAGTGGGCACAGCTGTGTTATGGGGTTTCTTTG-ACTTGG------ATGTAT-TGAGCTGGTGATGGGTTGTTTAAAGTGTGAC-------------TGATATA----AATTTGTTAATGAAT-TTTTTT---ATAGTGTGAGACAGCTGCATTGTGTGGGACT--GAG--GCAAGATTTAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     230748 310 -    383796 TTCCTCCTCTAGAGGCATTTCCTGTAGGCTCTGACCAGGTTCTGTTTTTGTTCTACCCCAGGCAGCGACAGTGCCCAGGGCTCTGATGTGTCTCTCACAGCCTGTAAAGGTGAGATCCTGAGGAG----GGGGAGCTGATGTGTGT-GGGTTGTTGGGGGGAACAGTGGGCACAGCTGTGTTATGGGGTTTCTTTG-ACTTGA------ATGTAT-TGCGCTGGTGATGGGTTGTTTCAAGTGTGAC-------------TGATAGA----AATTTGTTAATGAAT-TTTTTTT--ATAGTGTGAGACAGCTGCCTTGCGTGGGACTGAGAG--GCAAGATTTAT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           212270 314 +  18854210 TTCCTCCTACAGCTGCATCTCCTGTGATCTCTGA-CGGGTCCTGTTT-TGTTCTACTCCAGGCAATGACAATGACCAGGGCTCAGATGTATCTGTCATAGCTTATAAAGGTGAGCGCCTG---------GGGGCCCTGAAGTGGGA----------GAGGGTAGATGGGATATAGCTGGGCTATAGGGGTTCTCTGCATTTGG------ACATTTGTGAGCATGTCGTGGGATGCTCAGAGAGTCACCATTTACAGTGACTGATATG----AATTTGTTCATGATCAACTGGTTCTATAGTGTGAAACATCTGCCTGGTATAGAAATGAGGGATGCAAGATTTGT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=319817.000000
s hg38.chr6_GL000254v2_alt  1353633  49 +   4827813 TCATGCCTTCCCTTTGTGACTTCAAGAACCCTGACTTCTCTTTCT--------------------------------------------------------------------------------------------GCAA
s panTro5.chr6             30224492  49 + 175400573 TCATGCCTTCCCTTTGTGACTTCAAGAACCCTGACTTCTCTTTCT--------------------------------------------------------------------------------------------GCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30454675  49 + 173848474 TCATGCCTTCCCTTTGTGACTTCAAGAACCCTGACTTCTCTTTCT--------------------------------------------------------------------------------------------GCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     163962  48 +   2037526 TCATG-CTTCCCTTTGTGACTTCAAGAACCCTGACTTCTCTTTCT--------------------------------------------------------------------------------------------GCAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74833707  49 + 122973662 TCATGCCTTCCCTTTGTGACTTCAAGAACCCTGACTTCTCTTTCT--------------------------------------------------------------------------------------------GCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30619007  48 + 172585720 TCACGCCTTCTCTTTGTGACTTGAAGAACCCTGACTT-TCTTTCT--------------------------------------------------------------------------------------------GCAA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     164926  49 +   1495729 TCATGCCTTCCCTTTGTGACTTCAAGAACCCTGACTTCTGTTTCT--------------------------------------------------------------------------------------------GCAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     331807  48 -    863181 TCCCGCCTTCTCTTTGTGACTTCAAGAACCCTGACTT-TCTTTCT--------------------------------------------------------------------------------------------GCAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29366066  49 -  71996105 TCATGCCTTCCCTTTGTGACTTCAAGAACCCTGACTTCTGTTTCT--------------------------------------------------------------------------------------------ACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     143598  49 -    735854 TCATGCCTTCCCTTTGTGACTTCAAGAACCCTGACTTCTGTTTCT--------------------------------------------------------------------------------------------GCAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     112934  49 -   1829203 TCATGTCTTCCCTTTGTGACTTCAAGAACCCTGACTTCTGTTTCT--------------------------------------------------------------------------------------------GCAA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           126771  49 +    515838 CCACACCTTCCATTTGTGACTTCAAGAACCCTGACTTCTCTTACT--------------------------------------------------------------------------------------------GCAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     594920  49 -   1771730 CTACAGCTTCGATTTGGGACTTCAAGAACCCTGACTTCTCTTACT--------------------------------------------------------------------------------------------GCAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     231058  49 -    383796 CCACACCTTCGATTTGTGACTTCAAGAATCCTGACTTCTCTTACT--------------------------------------------------------------------------------------------GCAA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           212584 141 +  18854210 TCTTAGCCCCAAATTTTGACTTTATAAACTGTGATTGCTCTTTCTTTCTTTTTTTTtttttttttttttttcttttgagactgagtctgtctcactttatcaccctcaattagagtgccagggcatcatagctgacagcaa
i otoGar3.GL873550         C 0 I 201
e mm10.chr17               58018469 2227 -  94987271 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=4052724.000000
s hg38.chr6_GL000254v2_alt  1353682 527 +   4827813 AGGCATCTG-AATGTGTCTGTGTCCCTATAGGCATAATGTGAGGTGGTGGGGAGACCAGCCCACACCCGTGTCC-----------------ACCATGACCCTG-TTCCCCACACTGACCTACATTC------CTTCCCC-----GATCACCTTTCCTGTTCCAG-AGAAGTGGTGCTGGGATGTCTCCATCTCTGTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTACTTCCCTATTAAAATTAGAATCTGAGTATAAATTTACTTTTTTCAAATTATTTCC---ATGACGGGTTGATGGGTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAAGACATGAGAACCTTCCAGAGTCCACGTGTT----------TCTTGTGCTGATTTGTTGCAGGGGAGG--------------AGAGTAGATGGGG-CTGTGCCCAGTGTGTGCTCAGGCCACCATGGGCTTT-ATGTGGTCACAGCTCACCTGGGTCATCTTTGCTGCTCCACTGTCCTTGGCCCTTCAGTAGAACCTTGTCCCACCAGGACCTGTGATCACAGGGACTTGGAT
s panTro5.chr6             30224541 527 + 175400573 AGGCATCGG-AATGTGTCTGTGTCCCTATAGGCATAATGTGAGGTGGTGGGGAGACCAGCCCACACCCGTGTCC-----------------ACCATGACCCTC-TTCCCCACACTGACCTACATTC------CTTCCCC-----GATCACCTTTCCTGTTCCAG-AGAAGTGGTGCTGGGATGTCTCCATCTCTGTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTACTTCCCTATTAAAATTAGAATCTGAGTATAAATTTACTTTTTTCAAATTATTTCC---ATGACAGGTTGATGGGTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATTGAAGACATGAGAACCTTCCAGAGTCCACGTGTT----------TCTTGTGCTGATTTGTTGCAGGGGAGG--------------AGAGTAGATGGGG-CTGTGCCCAGTGTGTGCTCAGGCCACCATGGGCTTT-ATGTGGTCACAGCTCACCTGGGTCATCTTTGCTGCTCCATTGTCCTTGGCCCTTCAGTAGAACCTTGTCCCACCAGCACCTGTGATCACAGGGACTTGGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30454724 527 + 173848474 AGGCATCGG-AATGTGTCTGTGTCCCTATAGGCATAATGTGAGGTGGTGGGGAGACCAGCCCACACCCGTGTCC-----------------ACCATGACCCTC-TTCCCCACACTGACCTACATTC------CTTCCCC-----GATCACCTTTCCTGTTCCAG-AGAAGTGGTGCTGGGATGTCTCCATCTCTGTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTACTTCCCTATTAAAATTAGAATCTGAGTATAAATTTACTTTTTTCAAATTATTTCC---ATGACAGGTTGATGGGTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATTGAAGACATGAGAACCTTCCAGAGTCCACGTGTT----------TCTTGTGCTGATTTGTTGCAGGGGAGG--------------AGAGTAGATGGGG-CTGTGCCCAGTGTGTGCTCAGGCCACCATGGGCTTT-ATGTGGTCACAGCTCACCTGGGTCATCTTTGCTGCTCCATTGTCCTTGGCCCTTCAGTAGAACCTTGTCCCACCAGCACCTGTGATCACAGGGACTTGGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     164010 523 +   2037526 GGGCATCTGAAATGTGTCTGTGTCCCTATAGGCATAATGTGAGGTGGTGGGGAGACCAGCCCACACCCGTGTCC-----------------ACCATGACCCTC-TTCCCCACACTGACCTACATTC------CTTCCCT-----GATCACCTTTCCTGTTCCAG-AGAAGTGGTGCTGGGATGTCTCCATCTCTGTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTACTTCCCTATTAAAATTAGAATCTGAGTATAAATTTACTTTTTTCAAATTATTTCC---ATGACAGGTTGATGGG----TTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAAGACATGAGAACCTTCCAGAGTCCACGTGTT----------TCTTGTGCTGATTTGTTGCAGGGGAGG--------------AGAGTAGATGGGG-CTGTG-CGAGTGTGTGCTCAGGCCACCATGGGCTTT-ATGTGGTCACAGCTCACCTGGGTCATCTTTGCTGCTCCATTGTCCTTGGCCCTTCAGTAGAACCTTGTCCCACCAGGACCTGTGATCACAGGGACTTGGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74833756 528 + 122973662 AGGCATCTG-AATGTGTCTGTGTCCCTATAGGCATAATGTGAGGAGGTGGGGAGACCAGCCCACACCCGTGTCC-----------------ACCATGACCCCCATTCCCCACACTGACCTACATTC------CTTCCCC-----GATCACCTTTCCTGTTCCAG-AGAAGTGGTGCTGGGATGTCTCCATCTCTGTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTACTTCCCTATTAAAATTAGAATCTGAGTATAAATTTACTTTTTTCAAATTATTGCC---ATGACAGGTTGATGGGTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAAGACATAAGAACCTTCCAGAGTCCACGTGTT----------TCTTGTGCTGATTTGTTGCAGGGGAGG--------------AGAGTAGATGGGG-CTGTGCCCAGTGGGTGCTCAGGCCACCATGGGCTTT-ATGTGGTCACAGCTCAGCTGGGTCATCTTTGCTGCTCCATTGTCCTTGGCCCTTCAGTAGAACCTTGTCCCACCAGGACCTGTGATCACAGGGACTTGGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30619055 526 + 172585720 AGGCACCTG-AATGTGTCTGTGTTCCTGTAGGCATAATGTGAGGAGGTGGGGAGAACACCCCATCCCCGTGTCC-----------------ACCATGACCCTC-TTCCCCACGCTGACCTGTGTTC------CCTCCCC-----ATTTATCTTTCCTGTTCCAG-GGAGGTGGGGCTGGGATGTCTCTATCTCTGTCTCAACTTCATGGTGCACTGAGCTGTATCTTCTTCCTTCCCTATTACAATTAGAACCTGAGTATAAATTTAC-TTTTTCAAATTCTTGCC---ATGAGAGGTTGATGAGTTAATTAAAGGAGAATATTCCTAAAATTTGAGAGAGAAAATAAATGGAAGACCTGAGAACCTTCCAGAGTCCACGTGTT----------TCTTGTGCTGATTTGTTGCAGGGGAGG--------------AGAGTAGATGGGG-CTGTGCCCAGTTTGTGTTCCGGCCACCATGGGCTTT-ATGTGGTCACTGCTTGGCTGAATCATCTTTGCTCCTTCATTGTCCTTGGCCCTTCAGTAGAACCTTGTCCCACCAAGACCTGTGATCACAGGGGGTTGGAT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     164975 524 +   1495729 AGGCATCTG-AATGTGTCTGTGTTCCTGAGGGCATAATGTGAGGAGGTGGGGAGACCACCCCAGCCCCGTGTCC-----------------ACCATGACCCTC-TTCCCCACGCTGACCTGCATTC------CTTCCCC-----CATCACCTTTCCTGTTCCA---GAAATGGGGCTGGGATGTCTCCATCTCTGTCTCAACTTTATGGTGCACTGAGCTATAGCTTCTTACTTCCCTATTAAAATTAGAATCTGAGTATAAATTTAC-TTTTTCAAATTATTTCC---ATGAGAGGTTGATGGGTTAATTAAAGGAGAAGATTCCTGAAATTTGAGAGACAAAATAAATGGAAGACATGAGAACCTTCCAGAGTCCACGTGTT----------TCTTGTGCTGATTTGTTGCAGGGGAGG--------------AGAGTAGATGGGG-CTGTGCCCAGTGGGTGCTCAGGCCACCATGAACTTT-ATGTGGTCACTGCTCAGCTGGGTCATCTTTGCTGCTCCATTGTCCTTGGCCCTTCAGTAGAACTTTGTCCCATCAGGACCTGTGATCACAGGGGCTTGGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     331855 550 -    863181 AGGCACCTG-AATGTGTCTGTGTTCCTGTAGGCATAATGTGAGGAGGTGGGGAGAACACCCCATCCTCGTGTCCACCATGACCCTCTTCCTACCATGACCCTC-TTCCCCACGCTGACCTGTGTTCCCCCCGCCCCCCC-----ATTTACCTTTCCTGTTCCAG-GGAGGTGGGGCTGGGATGTCTCCATCTCTGTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTGCTTCCCTATTACAATTAGAATCTGAGTATAAATTTACTTTTTTCAAATTATTTCC---ATGAGAGGTTGATGGGTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAAGACATGAGAACCTTCCAGAGTCCACGTGTT----------TCTTGTGCTGATTTGTTGTAGGGGAGG--------------AGAGTAGATGGGG-CTGTGCCCAGTGGGTGCTCAGGCCACTGTGGGCTTT-ATGTGGTCACAGCTCGGCTGGGTCATCTTTGCTGCTCCATTGTCCTTGGCCCTTCAGTAGAACCTTGTCCCATCAGGACCTGTGATCACAGGGACTTAGAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29366115 527 -  71996105 AGGCATCTG-AATGTGTCTGTGTCCCTGTAGGCATAATGTGAGGAGGTGGGGAGACCACCCCAGCCCCGTGTCC-----------------ACCATGACCCTC-TTCCCCACGCTGACCTGCATTC------CTTCCCC-----CATCACCTTTCCTGTTCCAG-AGAGGTAGGGCTGGGATGTCTCCATCTCTTTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTGCTTCCCTATTAAAATTAGAATCTGAGTACAAATTTACTTTTTTCAAATTCTTGCC---ATGAGAGGTTGATGAGTTAATTAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAAGACCTGAGAATGTTCCAGAGTCCACGTGTT----------TCTTGTGCTGATTTGTTGCAAGGGAGG--------------AGAGTAGATGGGG-CTGTGCCCAGTGGGTACTTGGGCCACTGTGGGCTTT-ATGTGGTCACAGCTCGGCTGGGTCATCTTTGCTGCTCCATTGTCCTTGGCCCTTCAGTAGAACCTTGTCCCATCAGGACCTGTGATCACAGGGACTTGGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     143647 525 -    735854 AGGCATCTG-AATGTGTCTGTGTTCCTGTAGGCATAATGTGAGGAGGTGGAGAGACCAGCCCAACCCCATGTCC-----------------ACCATGACCCTC-TTCCCCACGCTGACCTGCATTC------CTTCCCC-----AATCACCTTTCCTGTTCCAG-AAA--TGGGGCTGGGATGTCTCCATCTCTGTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTACTTCCCTATTAAAATTAGAATCTGAGTATAACTTTACTTTTTTCAAATTATTTCC---ATGAGAGGTTGATGGGTTAATTAAAGGAGAAGATTCCTGAAATTTGAGAGACAAAATAAATGGAAGACATGAGAACCTTCCAGAGTCCATGTGTT----------TCTTGTGCTGATTTGTTGCAGGGGAGG--------------AGAGTAGATGGGG-CTGTGCCCAGTGGGTGCTCAGGCCACTGTGGGCTTT-ATGTGGTCACTGCTCAGCTGGGTCATCTTTGCTGCTCTATTGTCCTTGTCCCTTCAGTAGAACCTTGTCCCATCAGGACCTGTGATCACAGGGACTTGGAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     112983 527 -   1829203 AGGCATCTG-AATGTGTCTGTGTTCCTGTAGGCATAATGTGAGAAGGTGGGGAGACCACCCCACCCCCATGTCC-----------------ACCATGACCCTC-TTCCCCACAGTGACCTGCATTC------CTTCCCC-----CATCACCTTTCCTGTTCCAG-AGAGGTGGGGCTGGGATGTCTCCATCTCTGTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTGTTTTCCTATTAAAATTAGAATCTGAGTATAAATTTACTTTTTTCAAATTATTTCC---ATGAGAGGTTGATGGGTTAATCAAAGGAGAAGATTCCTAAAATTTGAGAGACAAAATAAATGGAAGACATGAGAACCTTCCAGAGTCCACGTGTT----------TCTTGTGCTGATTTGTTGCAGGAGAGG--------------AGAGTAGATGGGG-CTGTGCCCAGTGGGTGCTCAGGCCACTGTGGGCTTT-ATGTGGTCACAGCTCAGCTGGGTCATCTTTGCTGCTCCATTGCCCTTGGCCCTTCAGTAGAACCCTGTCCCATCAGGACCTGTGATCACAGGGACTTGGAT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           126820 518 +    515838 GGGCATCTG-AATGTGTCTGTGTCCCTATAGGCATAATGT--GGAGGTGGGGAGACCAGCCCATTCCCGTGTTC-----------------ACCATGACCC-C-TTCCCCACACTGACCTGCATTC------CTTCCCC------ATCACCTTTCCTGTTCCAG-AGACCTGGGGCTGGGATGTCTCCATCTCTGTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTACTTTCCTATTAAAATTAGAATGTGAATGTAA-TTTAC-TTCTTGAAATTATTTCC---ATGAGACATTGATGGGTTAATTAAA-GAGAAGATTCCTGAAATTTGAGAGACAAAATAAATGGAAGACCTGAGAACCTTCCACAGTCCAAATGTT----------TCTTGTGCTGATTTGTTGCAGGGGAG---------------GGAATAGATGGGG-CTGTGCCCAGTGGGTGTGCAGGCCACTGTGGGCTTT-ATGTGGTCACTGCTAGGCTGGATCATCTTTGCTG-TCCATTGTCTTTGGCCCTGCAATAGAAGCTAATCCCACCACGGCCAGTGATCACAGACACTTGAGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     594969 519 -   1771730 AGGCATCTG-AATGTGTCTAGGTCCCTATAGGCATAGTGTGAGGAGGTGGGGAGTCCAGCCCAGCCTTGTGTCC-----------------ACCATGACCC-C-TTCCCCATGCTGACCTGCATTT------CTTCCCC------ATCACCCTTCCTGTTCCAG-AGACCTGGGGTTGTGATGTCTCCATCTCTGTCTCAACTTCATGGTGCACTGAGCTGTAACTTCTTACTTTCCTATTAAAATTAGAACCTGAATATAA-TGTAC-TTC---ATATTATTTCC---ATGAGACATTGATGGGTTAATTAAAGGAAAAGATTCCTGAAATTTGAGAGACAAAATAAATGGAAGACCTGAGAACCTTCCACAGTCCACATGTT----------TCTTGTGCTAATTTGTTGTGGGGGAG---------------GGAGTAGATGGGG-CTGTGCCCAGTGGGTTCTCAGGTCACTGTGGGCTTT-ATGTGGTCACTGCTCGGCTGGGTCGCCTTTCCTGCTACATTGTCCTTGGCCCTTCAGCAGAAACTTGTCCCAAAACGGCCTGTGATCACAGGGACTTGTGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     231107 523 -    383796 AGGCATCTG-AATGTGTCTGTGTCCCTATAGGCATAATGCGAGGAGGTGGGGAGACCAGCCCAGCCCCGTGTCC-----------------ACCATGACCC-C-TTCCCCATGCTGACCTGCATTC------CTTCCCC------GTCACCTTTCCTGTTCCAG-AGACCTGGGGATGTGATGTCTCCATCTCTGTCTCAACTTTATGATGCACTGAGCTGTAACTTCTTACTTTCCTATTAAAATTAGAATCTGAATACAA-TTTAC-TTCTTCAAATTATGTCT---GTGAGACTTTGATGGGTTAATTAAAAGAGAAGATTCCTGAAATTTGAGAGACAAAATAAATGGAAGACCTGAGAACCTTCCACAGTCCACGTGTT----------TCTTGTGCTGATTTGTTGCAGGGATGC--------------AGAGTAGATGGGG-CTGTGGCCAGTGGATGCTCAGGCCACTGTGGGCTTT-ATGTGGTCACTGCTTGACTGGGTCATCTTTGCTGCTGCATTGTCCTTAGCCTTTCAGTAGAACCTTGTCCCACCTCGGCCTGTGATCACAGGGACCTGAGT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           212926 538 +  18854210 AGACACCTG-AATGTGTGTGCATTCCTATTAGGATAGTGTGAGGATGTGGGG-GACAAGGTCACCTC---ACCC-----------------ACCAAGACCT---CTCCTCACATTAACCTTTATTC------CCTTCCTCCCATGAGTAATGTCTTTGTTCCAGCAGAGGTGGGGCTGGGACATCTCCATTCCTATCTTAACTCCATGTTGCAATTAGC---AACTTCTTACTTTCTATTGAAAATAAGAACCTGGATATCAACTTAG-TTTTTAAAATTCTTCCTAAAATGTGGGGTTAAGGGGTTAAATAAAGAAGAAGATTCTTAAAA-ATGGGAAAGGAAACAAACAGAAGACCTGAGAACCTTCCAGAATCCACTTTTGCTGTCCGGAATCTTTTGCAGA--TGGGACAGGAGAAGGCTGTGAAGAGCCCAGTGTAGACGAGGCCTGTGACCAATCAGTGTTCGATTCCTTCTGTGCTTTGATGTGGTCACTTCTTGGCTGGGTCACCTT-----------TGTCTTTGTTCCTTCAGTACAGCCTTGTGCCATAAGGAACTGTGATCATATGGACTAGAAT
i otoGar3.GL873550         I 201 I 5
e mm10.chr17               58018469 2227 -  94987271 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=1614394.000000
s hg38.chr6_GL000254v2_alt  1354209 237 +   4827813 GTCACCTAGGGTGGTCCCTACACATCGAAGTCCTTCCGGTATGAAGAGACAAATTTTCAGTCCCCTGTATCTTTTGCCCTCCTTCCAGGTCTCTTTCCTGGATTGTA-TTTTCCATCTTTTTCCCCAGCCTTC-TTAAAGGAAGCAGATTCTGAAATTTGCAGAGAGGA-GGGGTCCCATAGTTTCTCATCGTAGGTAACTTTCTGTTGGAACTCCTCTT--CTGCTTTCCTAC-TCTTCTTC
s panTro5.chr6             30225068 237 + 175400573 ATCACCTAGGGTGGTCCCTACACATCGAAGTCCTTCCGGTATCAAGAGACAAATTTTCAGACCCCTGTATCTTTTGCCCTCCTTCCAGGTCTCTTTCCTGGATTGTA-TTTTCCATCTTTTTCCCCAACCTCC-TTAAAGGAAGCAGATTCTGAAATTTGCAGAGAGGA-AGGGTCCCATAGTTTCTCATTGTAGGTAACTTTCTGTTGGAACTCCTCTT--CTGCTCCCCTAC-TCTTCTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30455251 237 + 173848474 ATCACCTAGGGTGGTCCCTACACATCGAAGTCCTTCCGGTATCAAGAGACAAATTTTCAGACCCCTGTATCTTTTGCCCTCCTTCCAGGTCTCTTTCCTGGATTGTA-TTTTCCATCTTTTTCCCCAACCTCC-TTAAAGGAAGCAGATTCTGAAATTTGCAGAGAGGA-AGGGTCCCATAGTTTCTCATTGTAGGTAACTTTCTGTTGGAACTCCTCTT--CTGCTCTCCTAC-TCTTCTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     164533 239 +   2037526 GTCACCTAGGGTGGTCCCTACACATCGAAGTCCTTCCGGTATCAAGAGACAAATTTTCAGACCCCTGTATCTTTTGCCCTCCTTCCAGGTCTCTTTCCTGGACTGTATTTTTCCATCTTTTTCCCCAACCTTCTTTAAAGGAAGCAGATTCTGAAATTTGCAGAGAGGA-GGGGTCCCATAGTTTCTCATCGTAGGTAACTTTCTGTTGGAACTCCTCTT--CTGCTCTCCTAC-TCTTCTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74834284 237 + 122973662 GTCACCTAGGGTGTTCCCTACACATAGAAGTCCTTCCAGTATCAAGAGACAAATTTTCAGACCCCTGTATCTCTTGCCCTCCTTCCAGGTCTCTTTCCTGAATTGTA-TTTTCCATCTTTTTCCCCAACCTTC-TTAAAGGAAGCAGATTCTGAAATTTGCAGAGAGGA-GGGGTCCTGTAGTTTCTCATCATAGGTAACTTTCTGTTGGAACTCCTCTT--CTGCTCTCCTAC-TCTTCTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30619581 236 + 172585720 GTCACCTAGGGCGGTCCCTGCATACAAATCTCCTTCTGTTATCAAGAGATAAATTTTCAGACCTGTCCAGATCTTGCCCTCCTCCCAGGGCTCTTTCCTGGATTGTA-TTTTCCATCTTGT-CTCCAATCGTT-TTAAAGGAACCGGATTCTGAAATTTGCAGAGAGGA-TGGGTCCCCTAGTTTCTCATCACAGGTAACCTTCTGTTGGAGCTCCTCTT--CTGCTGTCCCAC-TCATCTTC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     165499 237 +   1495729 GTCACCTAGGGTGGTCCTTACACGTAGAAGTCCTTCCAGTATCAATAGACAAATTTTCAGACCCCTGTATCTCTCGCCCTCCTTCCAGGTCTCTTTCCTGGATTGTA-TTTTCCATCTTTTCCCCCAACCTTC-TTAAAGGAAGCAGATTCTGAAATTTGCAGAGAGGA-TGGGTCTCCTAGTTTCTCATCACAGGTAACTTTCTGTTGGAGCTCCTCTT--CTGCTGTCCCAC-TCATCTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     332405 237 -    863181 GTCACCTAGGGTGGTTCTTACATGTAGAAGTCCTTCTGGTATCAAGAGACAAATTTTCAGACCCCTGTATCTCTTGCCCTCCTTCCAGGTCTCTTTCCTGGATTGTA-TTTTCCATCTTTTTCCCCAGCCTTC-TTAAAGGAAGCAGATTCTGAAATTTACAGAGAGGA-GAGGTCCCATAGTTTCTCATCACAGGTAACTTTCTGTTGGAACTCCTCTT--CTGCTCTCCTAC-TCTTCTTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29366642 237 -  71996105 GTCACGTAGGGTGGTCCTTACACATAGAAGTCCTTCCGGTATCAAGAGACAAATTTTCAGACCCCTGTATCTCTCGCCCTCCTTCCAGGTCTCTTTCCTGGATTGTA-TTTTCCATCTTTTTCCCCAGCTTTC-TTAAAGGAAGCAGATTCTGAAATTTACAGAGAGGA-GGAGTCCCATAGCTTCTCATCATAGGTAACTTTCTGTTGGAGCTCCTCTT--CTGCTGTCCTGC-TTATCTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     144172 237 -    735854 GTCACCTAGGGTGGTCCTTACACATAGAAGTCCTTCCAGTATCAATAGACAAATTTTCAGACCCCTGTATCTCTCGCCCTCCTTCCAGGTCTCTTTCCTGGATTGTA-TTTTCCATCTTTTCCCCCAACCTTC-TTAAAGGAAGCAGATTCTGAAATTTGCAGAGAGGA-TGGGTCCCCTAGTTTCTCATCATAGGTAACTTTCTGTTGGAGCTCCTCTT--CTGCTGTCCTAC-TCATCTTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     113510 237 -   1829203 GTTACCTA-GGTGGTCCTTACACATAGAAGTCCTTCCGGTATCAAGAGACAAACTTTCAGACCCCTGTATCTCTCGCCCTCCTTCCAGGTCTCTTTCCTGGATTGTA-TTTTCCATCTTTTTCCCCAGCCTTC-TTAAAGGAAGCAGATTCTGAAATTTACAGAGAGGA-TGGGTCCTGTAGTTTCTCATCATAGGTAACTTTCTGTTGGAACTCCTCTT--CTACTTTCCTGCTTCATCTTC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           127338 235 +    515838 GTCACC-AGGGTGGTCTCTACACACACAAGTCCTTGTGGTATCAGGAGAGAAATTTCCAGACCCCCGTCCCTCTCACCCTCCTTCCAGGTCTCATTCCTGGATTGTA-TTTTCCTTCTTTT-CCCTAGC---C-TTAAACGAAGCAGATTCTGAAACTTGCAGAGAGAAGGGGGTCCCATAGTTTCTCATCGTAGGTAACTTTCTGTTGGAATTCCTTCTGCTCTCTCTCCTAC-TCTTCTTC
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     595488 238 -   1771730 GTCACCTATGGTGGTCTCTACACATAGAAGTCCTTGTGGTAGCAGGAGAGAAATTTTCAGACCCCTGTCCCTCTCGCCCTCCTTCCAGGTCTCTTTCCTGGATTGTA-TTTTCCATCTTTT-CCCCAGCCTTC-TTAAGCGAAGCAGATTCTGATATTTGCAGAGAGGA-GGGCTCCCGTAGTTTCTCATCGTAGGTAACTTTCTGTTGGAACTCCTTCTGCTCTCTCTCCTAC-TCTTCTTC
i cebCap1.NW_016107755v1   C 0 I 37615
s aotNan1.NW_018496904v1     231630 235 -    383796 GTCACCTATGGTGGTCTCTACACATAGAAGTCCTTGTGGTATCTGGAGACAAATTTTCAGACCCCTGTCCTTCTCACCCTCCTTCCAGGTCTCTTTCCTGGATTATA-TTTTCCATATTTT-CCCCCTT---A-TTAAATGAAGCAGATTCTGATACTTGCAGGGAGGA-GGGCTCCCGTAGTTTCTCATTGTGGGTAACTTTCTGTTGGAACTCCTTCTGCTCTCTCTCCTAC-TCTTCTTC
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=1570966.000000
s hg38.chr6_GL000254v2_alt  1354446 224 +   4827813 CTG-CCTGAGTTGTAGTAATCCCAGTGCTGGCTCCAATCCAAACTCATGCATTTATAAAGCAGAGTCTGATTTAGATTTATATGGGGTTGGAAAATTGGACCCACAAGGCTAGGATTATCTTTCCTGAACAGAAAAATATGGCTGTGCGCTGCAGTGTGCAGGAGGGTTGGTGTGGGAGGAG------GTGAGAA-------------------GGACACACAAGCAGCCCTGGTGAGAAAAGCACTGGC
s panTro5.chr6             30225305 224 + 175400573 CTG-CCTGAGTTGTAGTAATCCCAGTGCTGGCTCCAATCCAAACTCATGCATTTATAAAGCAGAGTCTAATTTAGATTTATATGGGGTTGGAAAATTGGACCCACAAGGCTAGGATTATCTTTCCTGAACAGAAAAATATGGCTGTGTGCTGCAGTGTGCAGGAGGGTTGGTGTGGGAGGAG------GTGGGAA-------------------GGACACACAAGCAGCCCTGGTGAGAAAAGCACTGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30455488 224 + 173848474 CTG-CCTGAGTTGTAGTAATCCCAGTGCTGGCTCCAATCCAAACTCATGCATTTATAAAGCAGAGTCTAATTTAGATTTATATGGGGTTGGAAAATTGGACCCACAAGGCTAGGATTATCTTTCCTGAACAGAAAAATATGGCTGTGTGCTGCAGTGTGCAGGAGGGTTGGTGTGGGAGGAG------GTGGGAA-------------------GGACACACAAGCAGCCCTGGTGAGAAAAGCACTGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     164772 223 +   2037526 CTG-CCTGAGTTGTAGTAATCCCAGTGCTGGCTCCAATCCAAACTCATGCATTTATAAAGCAGAGTCTAATTTAGATTTATATGGGGTTGGAAAATTGGA-CCACAAGGCTAGGATTATCTTTCCTGAACAGAAAAATATGGCTGTGTGCTGCAGTGTGCAGGAGGGTTGGTGCGGGAGGAG------GTGGGAA-------------------GGACACACAAGCAGCCCTGGTGAGAAAAGCACTGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74834521 224 + 122973662 CTG-CCTGAGTTGTAGTAATCCCAGTGCTGGGTCCAATCCAAACTCATGCATTTATAAAGCAGAGTCTAATTTAGATTTATATGGGGTTGGAAAATTGGACCCACAAGCCTAGGATGATCTCTCCTGAACAGAAAAATATGGCTGTGTGCTGCAGTGTGCAGGAGGGTTGGTGTGGGAGGAG------GTGGGGA-------------------GGACACACAAGCAGCCCTGGTGAGAAAAGCACTGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30619817 231 + 172585720 CTGCCCTGAGTTGTAGTAATCCTAGCGCTGGCTCCAATCCAAACTCATGGATGTATAAAGCAGAGTCTAATTTAGATTCGTATGTGGTTGGAAAATTGCACCCATAAGGCTAGGGTTATTGTTCCTGAAGAGAAAAATATGGTTGCGTGCTGCAGTGTGCAGGAGGGTTGGTGTGGGAGGAGGGGGAAGAAGGGA-------------------GGATGCACAAGCAGCCCTGGTGAGAAAAGCACTGGC
i rheMac8.chr4             C 0 I 57635
s macNem1.NW_012012100v1     165736 220 +   1495729 CTGCCCTGAGTTGTAGTAATCCTAGTGCTGGCTCCAATCCAAACCCATGGATGTATAAAGCAGAGTCTAATTTAGATTCATATGTGGTTGGAAAATTGGACCCAGAAGCCTAGGATTATCTTTCCTGAACAGAAAAATATGGTTGTGTGCTGCAGTGTGCAGGAGGATTGGTGTGGG-----------GGAGGGA-------------------GGACACACAAGCAGCCCTGGTGAGAAAAGCACTGGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     332642 229 -    863181 CTGCCCTGAGTTGTAGTAATCCTAGCACTGGCTCCAATCCAAACTCATGCATTTATAAAGCAGAGTCTAATTTAGATTCATATGTGGTTGGAAAATTGGACCCAGAAGCCTAGGATTATCTTTCCTGAACAGACAAATATGTTTGTGTGCTGCAGTGTGCAGGAGGGTTGGTGTGGGAGGAGGAAG--GGAAGGA-------------------GGACACACAAGCAGCCCTGGTGAGAAAAGCACTGGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29366879 221 -  71996105 CTGCCCTGAGTTGTAGTAATCTTAATGCTGGCTCCAATCCAAACTCATGGATTTATAAAGCAGAGTCTAATTTAGATTCATATGTGGTAGGAAAATTGGACCCAGAAGCCTAGGATTATCTTTCCTGAACAGAAAAACATGGTTGTGTGCTGCAGTGTGCAGGAGGATTGGTGTGGGG----------GGAGGGA-------------------GGACACACAAGCAGCCCTGGTGAGAAAAGCACTGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     144409 221 -    735854 CTCTCCTGAGTTGTAGTAATCCTAGCGCTGGCTCCAATTCAAACTCATGGATTTATAAAGCAGAGTCTAATTTAGATTCATATGTGGTTGGAAAATTGGACCCAGAAGCCTAGGATTATCTTTCCTGAACATAAAAATATGGTTGTGTGCTGCAGTGTGCAGGAGGGTTGGTGTGGGG----------GGAGGGA-------------------GGACACACAAGCAGCCCTGGTGAGAAAAGCACTGGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     113747 229 -   1829203 CTGCCCTGAGTTGTAGTAATCCTAGTGCTGGCTCCAATCCAAACTCATGGATTTATAAAGCAGAGTCTAATTTAGATTCATATGTGGTTGGAAAATTGGACCCAGAAGCCTAGGATTATCTTTCCTGAACAGAAAAATATGGTTGTGTGCTGCAGTGTGCAGGAGGATTGGTGTGGGAGGAGGAAG--GGAAGGA-------------------GGACACACAAGCAGCCCTGGTGAGAAAAGCACTGGT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           127574 224 +    515838 ACC-CCTGAGTTATAGTAATCCTAGTGCTGCCTCCAATCCAAACCCACGGATTTATAAAGCAGAGTCTAACTTAGATTCATGTGTGG-----------------------TAGGATTATCTTTCCTGAAGAGAAAAATATGGTTGTGTGCTGCAGCATGCAGGAGGGTTGGTGTgggaggagggag--ggagggagggagggagggagggaggggggCACACACGCAGCCCTGGTGAGAAAAGCTCTGGC
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     633341 232 -   1771730 CTG-CCTGAGTCGTAGTAATCCTAGTGCTGCCTCCAATCCAAACTCACGGATTTATAAAGCAGAGTCTAACTTAGATTCATATGTGGTTGGGAAATTGGACCCATAAGCCTGGGGTTATCTTTCCCGAAGAGAAAAATATGGTTGTGTGCTGCAGTGTGCAggagggttggtgtgggaggaggtag--ggagggaggga---------------gggCACACACGCAGCCCTGGTGAGAAAAGCTCTGGC
i cebCap1.NW_016107755v1   I 37615 C 0
s aotNan1.NW_018496904v1     231865 228 -    383796 CTG-CCTGAGTTGTAGTAATCCTAGTGCTGCCTCCAATCCAAACTCATGGATTTATAAAGCAGAGTCTGACTTAGATTCATGTGTGGTTGGAAAATTGGAGCCATAAGCCTAGGGTTATCTTTCCTGAAGAGAAAAATATGGTTGTGTGCTGCTGCGTGCAggagggttggtgtgggaggagggag--ggaggga-------------------ggACACAGAAGCAGCCCTGGAGAGAAAAGCTCTGGC
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=3530647.000000
s hg38.chr6_GL000254v2_alt  1354670 513 +   4827813 AGCACTGATGTTGGTGTGAGATGATGTTGTTCTTTAGC----------------------------TACGTTAATAAAGATATTGCCTTTAGAATACAGAGGTGCTCTACAGTGAtcattcattcaactgacatttgttgtctgctaggtatatgactg-tttttgcatttagaaaacatcattaaagtaaaaacagaaaaatttctggccttgtggtgtatacgttctagatgcaagcttgtccaacctgcagctctcgggctgcgtgtggcccgggacagctttgaatgtaagaagtttttttgcttatctgtggtagcaaatatcatgaaaattatgcacgcacatg--tttttcttttttctattct-ttctgctcatcagctgtcattagtgtattttatgtgtggctcaagacaatgcttattcttcccaactggcccagggaagccaaaaaattggacacctctgtaggcagatgatagatatagtataagcagagtaggaacagaaaat-gcttgagttagaaggtggcaagtgctgt
s panTro5.chr6             30225529 513 + 175400573 AGCACTGATGTTGGTGTGAGATGATGTTGTTCTTTCGC----------------------------TACATTAATAAAGATATTGCCTTTAGAATACAGAGGTGCTCTACAGTGAtcattcattcaactaacatttgttgtctgctaggtatatgactg-tttttgcatttagaaaacataattaaagtaaaaacagaaaaatttctggccttgtggtgtatacgttctagatgcaagcttgtccaacccgcagctctcgggctgcatgtggcccaggacagctttgaatgtaagaagtttttttgcttatctgtggtagcaaatatcatgaaaattatgcacgcacatt--tttttcttttttctattct-ttctgctcatcagctgtcattagtgtattttatgtgtggctcaagacaatgcttattcttcccaagtggcccagggaagccaaaaaattggacacctctgtaggcagatgatagatatagtataagcagagtaggaacagaaaat-gcttgagttagaaggtggcaagtgctgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30455712 513 + 173848474 AGCACTGATGTTGGTGTGAGATGATGCTGTTCTTTCGC----------------------------TACGTTAATAAAGATATTGCCTTTAGAATACAGAGGTGCTCTACAGTGAtcattcattcaactaacatttgttgtctgctaggtatatgactg-tttttgcatttagaaaacatcattaaagtaaaaacagaaaaatttctggccttgtggtgtatacgttctagatgcaagcttgtccaacccgcagctctcgggctgcatgtggcccaggacagctttgaatgtaagaagtttttttgcttatctgtggtagcaaatatcatgaaaattatgcacgcacatt--tttttcttttttctattct-ttctgctcatcagctgtcattagtgtattttatgtgtggctcaagacaatgcttattcttcccaagtggcccagggaagccaaaaaattggacacctctgtaggcagatgatagatatagtataagcagagtaggaacagaaaat-gcttgagttagaaggtggcaagtgctgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     164995 512 +   2037526 AGCACTGATGTTGGTGTGAGATGATGTTGTTCTTTAGC----------------------------TACGTTAATAAAGATATTGCCTTTAGAATACAGAGGTGCTCTACAGTGAtcattcattcaactgacatttgttgtctgctaggtatatgactg-tttttgcatttagaaaacatcattaaagtaaaaacagaaaaatttctggccttgtggtgtatacgttctagatgcaagcttgtccaacccgcagctctcgggctgcatgtggcccaggacagctttgaatgtaagaagttgttttgcttatctgtggtagcaaatatcatgaaaattatgcacgcacatt--tttttcttttttctattct-ttctgctcatcagctgtcattagtgtattttatgtgtggttcaagacaatgcttattcttcccaactggcccagggaagccaaaaaattggacacctctgtaggcagatgatagatatagtataagcagagtaggaacag-aaat-gcttgagttagaaggtggcaagtgctgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74834745 512 + 122973662 AGCACTGATGTTGGTGTGAGACGATGTTGTTCTTTAGC----------------------------TACGTTAATAAAGATATTGCCTTTCGGATAGGGAGGTGCTCTACAGTGAtcattcattcaactgacatttgttgtctgctaggtatatgactg-tttttgcacttagaaaacatcattaaagtaaaaacagaaaaatttctggcctcgtggtgtatacgttctagatgcaagcttgtccaacccacagctctcgggctgcatgtggcccaggacagctttgaaggtgagaagat-ttttgcttatctgtggtggcaaatatcatgaaaattatgcacgcatatt--tttttcttttttctattct-ttctgctcatcagcggtcattagtgtattttatgtgtggctcaagacaatgcttattcttcccatgtggcccagggaagccaaaaaattggacacctctgtaggcagatgatagatacagtataagcagagtaggaacagaaaat-gcttgagttagaaggtggcaagtgctgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30677683 521 + 172585720 GGCACTGATGGTGGTGTGAGATGATGTTGTTCTTTAGCTGCCATGAAACAGCATTTGACCTGAGGTTACATTAATAAAGATATTGCCTTTAGAATATAGAGGTGCTCTACAGTGATCATTCATTCAACTGACATTTGTTGTCTGCTAGGGATATGACTGTTTTTTGCACTTAGAAAA-ATCCTTAAAGTAAAAACTTAAAGATTTCCAGCCTTGTGGTGCATACATTCTAGATGcaagcttgtccaaccc-----------gctgcatgtgacccaggacagctttgaatgtgagaa-tt-ttttgcttatctgtggtggcaaataccatgaaaattaagcatgaacatt--------ttttttctattct-ttctgcccatcagctgtcattagtgtattttttgtgtggctcaagacaattcttcttcttcccatgtggcccagtgaagccaaaaaattggacacctctgTAGGCAGATGATAGATATAGTATAAGCAGAGTAGGAACAGAAGAT-GC-TGAgttagaaggtggtaagtgctgt
i rheMac8.chr4             I 57635 C 0
s macNem1.NW_012012100v1     165956 522 +   1495729 GGCACTGATGGTGGTGTGAGATGATGTTGTTCTTtagctgccatgaaacagcatttgacctgaggctacattaataaagatattgcctttagaatagggaggtGCTCTACAGTGAtcattcattccactgacatttgttgtctgctagggatatgactg-tttctgcattcagaaaacatcattaaagtaaaaactgaaaaatttccagccttgtggtgcatacattctagATGcaagtttgtccaaccc-----------gctgcatgtgacccaggacagctttgaatgtgagaactt-ttttgcttatctgtggtggcaaatatcatgaaaattatgcatgaacgtt--------ttttttctattct-ttctgctcatcagctgtcattactgtattttttgtgtggctcaagacaattcttcttcttcccatgtggcccagtgaagccaaaaaattggacacctctgCAGGCAGATGATAGATATAGTATAAGCAGAGTAGGAACAGAAGAT-GC-TGAGTTAGAAGGTGGCAAGTGATGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     332871 519 -    863181 GGCACTGATGGTGGTGTGAGATGATGTTGTTCTTTAGCTGCCATGAAACAGTATTTGACCTGAGGCTACATTAATAAAGATATTGCCTTTAGAATATAGAGGTGCTCTACAGTGATCATTCATTCAACTGACATTTGTTGTCTGCTAGGGATATGACTG-TTTCTGCATTTAGAAAACATCATTAAAGTAAAAACTGAAAAATTTCTAGTCTTGTGGTACGTATATTCTAGATGcaagcttctccaaccc-----------gctgcatgtgacccaggacagctttgaatgtgagaa-ct-ttttgcttatctgtggtggcaaatatcatgaaaattatgcatgaacatt--------ttttttctattct-ttctgcccatcagctgtcattagtgtattttttgtgtggctcaagacaa---ttcttcatcccctgtggcccagtgaagccaaaaaattggacacctctgTAGGCACATGATAGATATAGTATAAGCAGAGTAGGAACAGAAAAT-GCTTGAGTGAGAAGGTGGCAAGTGCTGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29367100 521 -  71996105 GGCACTGATGGTGGtgtgagatgatgttgttctttagctgccatgaaacagcatttgacctgaggctacattaataaagatattgcctttagaatatagaggtGCTCTACAGTGAtcattcattcaactgacatttgttgtctgctagggatacgactg-tttctgcatttagaaaacatcattaaagtaaaaactgaaaaatttccagccttgtggtgcatatattctagATGcaagc-tgtccaaccc-----------gctgcatgtgacccaggacagctttgaatgcgagaactt-ttttgcctatctgtggtggcaaatatcatgaaaattatgcatgaacatt--------ttttttctattct-ttctgcccatcagctgtcattagtgtattttttgtgtggctcaagacaattcttcttcttcccatgtggcccagtgaagccaaaaaattggacacctctgCAGGCAGATGATAGATATAGTATAAGCAGAGTAGGAACAGAAGAT-GC-TGAGTTAGAAGGTGGCAAGTGCTGT
i chlSab2.chr17            C 0 I 1064
s manLeu1.NW_012107142v1     144630 519 -    735854 GGCACTGATGGTGGTGTGAGATGATGTTTTTCTTTAGCTGCCATGGAACAGCATTTGCCCTGAGGCTACATTAATAAAGATATTGCCTTTAGAATAGGGAGGTGCTCTACAGTGATCATTCATTCCACTGACATTTGTTGTCTGCTAGGGATATGACTG-TTTCTGCATTCAGAAAACATCATTAAAGTAAAAACTGAAAAATTTCCAGCCTTGTGGTGCATATATTCTAGATGcaagc-tgtccaaccc-----------gctgcatgtgacccaggacagctttgaatgtgagaactt-ttttgcttatctgtggtggcaaatatcatgaaaattatgcatgaacatt--------ttttttctattct-ttctgctcatcagctgtcattagtgtattttttgtgtggctcaagacaa---ttcttcttcccatgtggcccagtgaagccaaaaaattggacacctctgTAGGCAGATGATAGATATAGTATAAGCAGAGTAGGAACAGAAAATGGT-TGAgtgagaaggtggcaagtgctgt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     113976 520 -   1829203 GGCACTGATGGTGGTGTGAGATGATGTTGTTCTTTAGCTGCAATGAAACAGCATTTGGCCTGAGGCTACATTAATAAAGATACTGCCTTTAGAATATAGAGGTGCTCTACAGTGAtcattcattcaactgacatttgttgtctgctagggatatgactg-tttctgcatttagaaaacatcattaaagtaaaaactgaaaaatttccagccttgtggtgcatatattctagATGcaagc-tgtccaaccc-----------gctgcatgcgacccaggacagctttgaatgtgagaactt-ttttgcttatctgtggtggcaaatatcatgaaaattatacatgaac-tt--------ttttttctattct-ttctgctcatcagctgccattagtgtattttttgtgtggctcaagacaattcttcttcttcccatgtggcccagtgaagccaaaaaattggacacctctgTAGGCAGATGATAGATATAGTATAAGCAGAGTAGGAACAGAAGAT-GC-TGAGTTAGAAAGTGGCAAGTGCTGT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           127798 537 +    515838 AGCACTGATGtcagtgtgagatgatgttgttctgtagctgccacaaaacagcatttggcctaaggctacattaataaagatattgcctttagaatagggaagTGCCCTTCAGTGATCGTTCATTCAACTGACATTTGTTGTTTGCTAGGTAAATGACTG-CTTTTGCATTTAGAAAACATTTT---GGTAAAAATAGCAGGATTTCCAGCCTTGTGGTGTATGCGTTCTAGATGcaagctgatccaacctgtggctcacaggctgcatgtggcccaggacagcttccaatatgagggcgt-ttttgcttatctttggtggcagatatcatgaaaattatgcacatacttttgtttttcttgtttccattttattctgctcatcagctatcattagtgtattttatgtgtggctcaagacaa---ttcttcttcccctgtggtccagggaagccaaaagattggacacctctgTGGGCACATGATAGATACAGTATAAGCAGAGTAAGAGCAGAAAAT-GCTTGAgtgagaaggtggcaagtgctgt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     633573 533 -   1771730 AGCACTGATGtcagtgtgagatgatgttgctctgtagctgccacaaaacagcatttggcctgaggctacattaataaagatattgcctttagaatagggaggtGCCCTACAGTGATCATTCATTCAACTGACATTTGTTGTCTGCTAGGTATATGACTG-CTTTTGCATTTAGAAAGCATTTT---AGTAAAAACA--AGGATTTTCGGCCTTGTGGTGTATATGTTCTAGATGTaagcttatccaacctgtggctcacaggctgcatgtggcccaggacagctttgaatgtgaagacgt-ttttgcttatctgtggtggcagatatcataaaaattatgcacatacttt--ttttcttttttatgattattttctgctgaccagctgtcattagtgtattttatgtgtagctcaagacaa---ttattcttcccatgtggttcagggaagcgaaaagactggacacctctgTAGGCAGATGATAGATACAGTATAAGCAGAGTAAGAGCAGAAAAT-GCTTGAgttagaaggtggcaagtgctgt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     232093 530 -    383796 AGCACTGATGtcagcgtgagacgatgttgccctgtagctgccacaaaacagcatttggcctgaggctacattaataaagatattgcctttagaatagggaggtGCCCTTCAGTGATCGTTCATTCAACTGACATTTGTTGTCTGCTAGGTATATGACTG-CTTTTGCATTTAGAAAACATTTT---AGTAAAAACG--AGGATTTCCAGCATTGTGGTGTATGCGTTCTAGATGTaagcttatccaacctgtggctcacaggctgcatgtggctcaggacagcttccaatatgaggacgt-ttttgcttatctgtggtggcagat---atgaaaattatgcacatacttt--tttttcttgtttctatttttttctgctcatcagctgtcattagtgtgttttatgtgtggctcaagacaa---ttcttcttcccatgtggcccagggaagccaaaggattggacacctctgTAGGCAGACGATAGATATAGTATAAGCAGAGTAAGAGCAGAAAAT-GCTTGAgttagaaggtggcaagtgctgt
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=1013053.000000
s hg38.chr6_GL000254v2_alt  1355183 128 +   4827813 gtggcaggtgatccagagggtgggctgtggggacaggaaggtggctgttgtgctgggtggtcagcatgggccttgttgc-aaatgtgaccttggagtaaagatttgagggatgtgaggagttgtctaca
s panTro5.chr6             30226042 128 + 175400573 gtggcaggtgatccagagggtgggctgtggggacaggaaggtggctgttgtgctgggtggtcagcatgggccttgttgc-aaatgtgaccttggagtaaagatttgagggatgtgaggagttgtctaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30456225 128 + 173848474 gtggcaggtgatccagagggtgggctgtggggacaggaaggtggctgttgtgctgggtggtcagcatgggccttgttgc-aaatgtgaccttggagtaaagatttgagggatgtgaggagttgtctaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     165507 127 +   2037526 gtggcaggtgatccagagggtgggctgtggggacaggaaggtggctgttgtgctgggtggtcagcatgggccttgttgc-aaatgtgaccttggagtaaagatttga-ggatgtgaggagttgtctaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74835257 128 + 122973662 gtggcaggtgatccagagggtgggctgtggggacagggaggtggctgttgtgctgggtggtcagcatgggccttattgc-aaatgtgaccttggagtaaagatttgagggatgtgaggagttgtctgca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30678204 128 + 172585720 gtggcaggtgatccagagtgtgggctgtgaggacagggaggtggctgttgtgctgggtggtcagcatgggccttgttgc-aaatgtgaccttggagtaaagatttgagggatgtgaggagttgtccaca
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     166478 128 +   1495729 GTGGCAGGTGATCcagagtgcgggctgtgggaacagggaggtggctgttgtgctgggtggtcagcatgggccttgttgc-aaatgtgaccttggagtaaagatttgagggatgtgaggagctgtctaca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     333390 128 -    863181 GTGGCAGGTGATCcagagtgtgggctgtggggacagggaggtggctgttgtgctgggtggtcagcatgggccttgttgc-aaatgtgaccttggagtaaagatttgagggatgtgaggagttgtccaca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29368685 128 -  71996105 GTGGCAGGTGATCcagagtgtgggctgtggggacagggaggtggctgttgtgctgggtggtcagcatgggccttgttgc-aaatataaccttggagtaaagatttgagggatgtgatgagctgtctaca
i chlSab2.chr17            I 1064 C 0
s manLeu1.NW_012107142v1     145149 128 -    735854 gtggcaggtgatccagagtgtgggttgtggggacagggaggtggctgttgtgctgggtggtcagcatgggccttgttgc-aaatgtgaccttggagtaaagatttgagggatgtgaggagttgtccaca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     114496 128 -   1829203 GTGGCAGGTGATTCAGAGTGTGGGCTGTGGGGACAGGGAGGTGGCTGTTGTGCTGGGTGGTCAGCATGGGCCTTGTTGC-AAATGTGACCTTGGAGTAAAGATTTGAGGGATGTGAGGAGCTGTCTACA
i colAng1.NW_012115577v1   C 0 M 1730
s saiBol1.JH378341           128335 127 +    515838 ggggcaggtgatccagagtgtgggctgtggggaca-gggggtggctgctgtgctgggtggtcagcatgggccttgttgc-aaatgtgacctttgagtgaagatttgagggatgtgaggagctgtcccca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     634106 128 -   1771730 ggggcaggggatccagagtgtgggctgtggggacaggggggtggctgctgtgctgggtggtcagcatgggcctcattgc-aaatgtgaccttcgagtaaagatttgagggatgtgaggagctgtccaca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     232623 128 -    383796 ggggcaggtgatccagagtgtgggctgtggggacagggaggtggctgttgttccgggtggtcagcat-ggccttgttgcaaaatgtgacctttgagtaaagatttgagggatgtgaggagctgtccaca
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=9736929.000000
s hg38.chr6_GL000254v2_alt  1355311 1598 +   4827813 aggatgtctgggaaagttcttttcaggcaggggaaccttcagtgcagatgcactagggcagg-aaattgtctgtgttcctggaaggaggaagaggccagaagggctggacacagagaaactgaagtgaggtcaaaggtgtggctagagcaggtagccctgaagggtgtgggaagggtgttgacctttgctctgaatgacatggg------gaggacagttttgaaaagtgggacatggtagggctcatcctttgaaagcttctttctggctgctgtgctgagaacagaattgagaggtggggaaccagtgatgcagtggggaaaatggtgggaaaggagtacagtattctaggatggacacgttgcttaccttgactagggtgtgagcaggggaaatagtgagaagtgaagggattctggatgaatttgaagatggac-tcacagcacttgctaatgga------------tgtgag-aagaagaatcaaggacacccacagtattggactgagtgagcagaagggtggagctgctgtcagtggagatagggagactctggcaggagtaCACAGAGGAGAGGGCATCGCAGGCATTCAATGGAGGAGACATCTATGAGGAATGCAGGTGAGGGGCCCAGATGCCTCTGCAGCTACAGATTCATCATCCAATCACTCTCCTACTCCCACCACCCCTGTGTCTCAGAGCCAGAGCACTGATTCTCCCCTGGGCTGTGGGCACAGGTAGGTGAAAGTCAGGGAAGTTGTGGTCTGCTATTGGTTAtaataagtcacagatcattatgctttctcagataattaaa-gaaataataagagaatgtgtaattaggacacttag----aagactacaataatgcaaag-gtttttattcatctaaagaaggtaacataagaaaaatagttgagcaagaaagagataatattagaaggcagcaaatgacaatggacagacttaaacccaatgaggtcaataattacattaaacataatggactcagacactccaattacaagacaaatagtgca-ggggggtaaaaataaa----taactaaataaa----taatcatgggctgtttacaaaagacataat-ttcagtagaaggtaaagaaaagttgaaagtaaaaggatagag----aataccagacaaacattcatgaaaGACCACATGGAGACGCCATTTAGAAAAATTACAGGATATGAGTCTCCTGAGACATAGAGTACACGTAGACAGCTCACAAGGtctttttcccttttttc-agagacagggtctgttgcccaggttgaaatgcaatggtgatatcataccttactgtaacctcaaactcctgggctggagcaattctcctgcc-tcagccttccgagtagctaggaccacaagcctgt--gccgccaca-cctggc-TATAATGTCTCATTTTCTCATTTGCTGTGGTGTGAACAAGGAAACAATACCATGCCATGTATTTGACTTGCAGCAGGCACACAACAAATGTCA-GGTGAATTAAGAAATAAAACCACTTAGTAATCC-AAGCCATATCCACATTTACATCTTACAGATGAGGAGCAACATCCCAGACAAGTAAAGTAAAATAAATTGATTTACATCATCCAGAGCAG
s panTro5.chr6             30226170 1602 + 175400573 aggatgtctgggaaagttcttttcaggcaggggaaccttcagtgcagatgcactagggcagg-aaattgtctgtgttcctggaaggaggaagaggccagaagggctggacacagagaaactgaagtgaggtcaaaggtgtggctagagcaggtagccctgaagggtgtgggaagggtgttgacttttgctctgaatgacatggg------gaggacagttttgaaaagtgggacatggtagggctcatcctttgaaagcttctttctggctgctgtgctgagaacagaattgagaggtggggaaccagtgatgcagtggggaaaatggtgggaaaggagtacagtattctaggatggacacgttgcttaccttgactagggtgtgagcagaggaaatagtgagaagtgaagggattctggatgaatttgaagatggac-tcacagcacttgctaatgga------------tgtgag-aagaagaatcaaggacacccacagtattggactgagtgagcagaagggtggagctgctgtcagtggagatggggagactctggcaggagcaTACAGAGGAGAGGGCATCGCAGGCATTCAATGGAGGAGACATCTATGAGGAATGCAGGTGAGGGGCCCAGATGCCTCTGCAGCTACAGATTCATCATCCAATCACTCTCCTACTCCCACCACCCCTGTGTCTCAGAGCCAGAGCACTGATTCTCCCCTGGGCTGTGTGCACAGGTAGGTGAAAGTCAGGGAAGTTATGGTCTGCTATTGGTTAtaataagtcacagatcattatgctttctcagataattaaa-gaaataataagagaatgtgtaattaggacacttag----aagactacaataatgcaaag-gtttttattcatctaaagaaggtaacacaagaaaaacagttgagcaagaaagagataatattaaaaggcagcaaatgacaatggacagacttaaacccaatgaggtcaataattacattaaacataatggactcagacactccaattacaagacaaatagtgca-ggggggtaaaaataaa----taactaaataaa----taatcatgggctgtttacaaaagacataat-ttcagtagaaggtaaagaaaagttgaaagtaaaaggatagagaataaataccagacaaacattcatgaaaGACCACATGGAGATGCCATTTAGAAAAATTACAGGATATGAGTCTCCTGAGACATAGAGTACATGTAGACAGCTCACAAGGtctttttcccttttttc-agagacagggtctgttgcccaggttgaaatgcaatggtgatatcataccttactgtaacctcaaactcctgggctggagcaattctcctgcc-tcagccttccgagtagctaggacgagaagcctgt--gccaccaca-cctggc-TATAATGTCTCATTTTCTCATTTGCTGTGGTGTGAACAAGGAAACAATACCATGCCATGTATTTGACTTGCAGCAGGTACACAACAAATGTCA-GGTGAATGAAGAAATAAAACCACTTAGTAATCC-AAGCCATATCCACATTTACATCTTACAGATGAGGAGCAACATCCCAGACAAGTAAAGTAAAATAAATTGATTTACATCATCCAGAGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30456353 1602 + 173848474 aggatgtctgggaaagttcttttcaggcaggggaaccttcagtgcagatgcactagggcagg-aaattgtctgtgttcctggaaggaggaagaggccagaagggctggacacagagaaactgaagtgaggtcaaaggtgtggctagagcaggtagccctgaagggtgtgggaagggtgttgacttttgctctgaatgacatgga------gaggacagttttgaaaagtgggacatggtagggctcatcctttgaaagcttctttctggctgctgtgctgagaacagaattgagaggtggggaaccagtgatgcagtggggaaaatggtgggaaaggagtacagtattctaggatggacacgttgcttaccttgactagggtgtgagcagaggaaatagtgagaagtgaagggattctggatgaatttgaagatggac-tcacagcacttgctaatgga------------tgtgag-aagaagaatcaaggacacccacagtattggactgagtgagcagaagggtggagctgctgtcagtggagatggggagactctggcaggagcaTACAGAGGAGAGGGCATCGCAGGCATTCAATGGAGGAGACATCTATGAGGAATGCAGGTGAGGGGCCCAGATGCCTCTGCAGCTACAGATTCATCATCCAATCACTCTCCTACTCCCACCACCCCTGTGTCTCAGAGCCAGAGCACTGATTCTCCCCTGGGCTGTGTGCACAGGTAGGTGAAAGTCAGGGAAGTTATGGTCTGCTATTGGTTAtaataagtcacagatcattatgctttctcagataattaaa-gaaataataagagaatgtgtaattaggacacttag----aagactacaataatgcaaag-gtttttattcatctaaagaaggtaacagaagaaaaatagttcagcaagaaagagataatattagaaggcagcaaatgacaatggacagacttaaatccaatgaggtcaataattacattaaacataatggactcagacactccaattacaagacaaatagtgca-ggggggtaaaaataaa----taactaaataaa----taatcatgggctgtttacaaaagacataat-ttcagtagaaggtaaagaaaagttgaaagtaaaaggatagagaataaataccagacaaacattcatgaaaGACCACATGGAGATGCCATTTAGAAAAATTACAGGATATGAGTCTCCTGAGACATAGAGTACATGTAGACAGCTCACAAGGtctttttcccttttttc-agagacagggtctgttgcccaggttgaaatgcaatggtgatatcataccttactgtaacctcaaactcctgggctggagcaattctcctgcc-tcagccttccgagtagctaggacgagaagcctgt--gccgccaca-cctggc-TATAATGTCTCATTTTCTCATTTGCTGTGGTGTGAACAAGGAAACAATACCATGCCATGTATTTGACTTGCAGCAGGTACACAACAAATGTCA-GGTGAATGAAGAAATAAAACCACTTAGTAATCC-AAGCCATATCCACATTTACATCTTACAGATGAGGAGCAACATCCCAGACAAGTAAAGTAAAATAAATTGATTTACATCATCCAGAGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     165634 1610 +   2037526 aagatgtctgggaaagttcttttcaggcaggggaaccttcagtgcagatgcactagggcagg-aaattgtctgtgttcctggaatgaggaagaggacagaagggctggacacagagaaactgaagtgaggtcaaaggtgtggctagagcaggtagccctgaagggtgtgggaagggtgttgacctttgctctgaatgacatggg------gaggacagttttgaaaagtgggacatggtagggctcatcctttgaaagcttctttctggctgctgtgctaagaacagaattgagaggtggggaaccagtgatgcagtgcggaaaatggtgggaaaggagtacagtattctaggatggacacgttgcttaccttgactagggtgtgagcaggggaaatagtgagaagtgaagggattctggatgaatttgaagatggac-tcacagcacttgctaatgga------------tgtgag-aagaagaatcaaggacacccacagtactggactgagtgagcagaagggtggagctgctgtcagtggagatggggagactctggaaggagcaTACAGAGGAGAGGGCATCGCAGGCATTCAATGGAGGAGACATCTATGAGGAATGCAGGTGAGGGGCCCAGATGCCTCTGCAGCTACAGATTCATCATCCAATCACTCTCCTACTCCCACCACCGCTGTGTCTCAGAGCCAGAGCACTGATTCTCCCCTGGGCTGTGTGCACAGGTAGGTGAAAGTCAGGGAAGTTATGGTCTGCTATTggttataataagtcacagatcattatgctttctcagataattaaaggaaataataagagaatgtgtaattaggacacttag----aagactacaataatgcaaag-gtttttattcatctaaagaaggtaacataagaaaaatagttgagcaagaaagagataatattagaaggcagcaaatgacaatggacagacttaaacccaacgaggtcaataattacattaaacataatggactcagacactccaattacaagacaaatagtgca-ggggggtaaaaataac----taactaactaac----taatcatgggctgtttacaaaagacataat-ttcagtagaaggtaaagaaaagttgaaagtaaaaggatagagaataaataccagacaaacattcatgaaaGACCACATGGAGATGCCATTTAGAAAAATTACAGGATATGAGTCTCCTGAGACATAGAGTACATGTAGACAGCTCACAAGGtctttttcccttttttc-agagacagggtctgttgcccaggctgaaatgcaatggtgatatcataccttactgtaacctcaaactcctgggctggagcaattctcctgccttcagccttctgagtagctaggaccacaagcctgtgcgccgccacacccTGGCATATAATGTCTCATTTTCTCATTTGCTGTGGTGTGAACAAGGAAACAATACCATGCCATGTATTTGACTTGCAGCAGGTACACAACAAATGTCAGGGTGAATGAAGAAATAAAACCACTTAGTAATCCAAAGCCATATCCACATTTACATTTTACAGATGAGGAGCAACATCCCAGACAAGTAAAGTAAAATAAATTGATTTACATCATCCAGAGCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74835385 1610 + 122973662 aggatgtctgggaaagttcttttcaggcaggggaaccttcagtgcagatgcactagggcagg-aaattgtctgtgttcctggaaaaaggaagaggccagaagggctggacacagagaaactgaagtgaggtcaaagatgtggctagagcaggtagccctggagggtgtgggaagggtgttgacctttgctctgaatgacatggg------gaggacagttttgaaaagtgggacatagtagggctcatcctttgaaagcttctttctggctgctgtgctgagaacagaattgagaggtggggaaccagtgatgcagtggggaaaatggtgggaaaggagtacagtattctaggatggacacgttgcttaccttgactagggtgtgagcaggggaaatagtgaaaagtgaagggattctggatgaatttgaagatggac-tcacagcacttgctaatggatt-tatctgtggtgtgag-aagaagaatcaaggacacccacagtattggactgagtgagcagaagggtggagctgctgtcagtggagatggggagactctggcaggagcatagagaggagacggcatcgcaggcattcagtGGAGGAGACATCTATGAGGAATGCAGGTGAGGGGCCCAGATGCCTCTACAGCTACAGATTCATCATCCAATCACTGTCCTACTCCCACCACCCCTGTGTCTCAGAGCCAGAGCACTGATTCTCCCCTGGGCTGTCTGCACAGGTAGGTGAAAGTCAGGGaagttatggtctgctgttggttataataagtcacagattattatgctttctcagataattaaa-gaaataataagagaatgtgtaattaggacacttaa----aagactacaataatgcaaag-ttttttattcatctaaagaaggtaacataagaaaaatagttgagcaagaaagag---atattagacggcagcaaatgacaatgtacagacttaaacccagtgaggtcaataattacattaaacataatggactcagacactctaattacaagacaaatagtgca-ggggggtaaaaataaa----taagtaaataaa----taatcataggctgtttacaaaagccataat-ttcagtagaaggtacagaaaagttgaaagtaaaaggatagagaagaaataccagacaaacattcatgaaaGACCACATGGAGATGCCATTTAGAAAAATTACAGGACACGAGTCTCCTGAGACATAGAGTACATGGAGACAGCTCACAAGGTCtttttcccttttttc-agagacagggtctgttgcccaggctgaaatgcaatggtggtatcatacctcactgtaacctcaaactcctgggctgaagcaattctcctgcc-tcagccttctgagtagctaggacgacaagcctgt--gccgccaca-cctggc-TATAATGTCTCATTTTCTCATTTGCTGTGGTGTGATCAAGGAAACAATACCATGCCATGTATTTGACTTGCAGCAGGTACACAACAAATGTCA-GGTGAATGAAGAAATAAAACCACTTAGTAATCC-AAGCCACATACACATTTACATCTTACAGATGAGGAGCAACATCCCAGACAAGTAAAGCAAAATAAATTGATTTACATCATCCAGAGCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30678332 1611 + 172585720 gggatgtctgagaaagttcttttcaggca-gggaaacttcagtgcagatgcactagggcagg-aaattgtctgtgttcctggaaggacaaagaggccagaagggctggacacagagaaactgaagtgaggtccaaggtgtggctagagcaggtagccctggagggtatgggaaggatgttgacctttgcgctgaatgctatggggagttagaggacagttttgaaaagtgggatatggtaggacttatcccttgaaagcttctctctggctgctgtgctgagaacagaattgagaggt-ggggaccagtgaggcagtggggaaaatggtgggaaaggagtgcagtattccagaatggagacattgcttaccttgactggggtgtgagcaggggaaatagtaggaactgaagggattatggatgaatgtgcagatggacttcacagcacttgctaatggatt-tatctgtggtgtgag-aagaagaatcaagggcacccacagtgttggactgagtgagcagaagggtggagctgctgtcagtggagatggggagactctggcagTATCATACAGAGGAGAGGGCATCGCGGGCATTCAGTGGAGAAGACATCTATGAGGAATGCAGGTGAGGGGCCCAAATGCCTCTGCAGCTACAGATTCATCATCCAATCACTCTCCTACTTCCGCCACCCCTGTGTCTCGGAGCCAGAGCACTGATTCTCCCCTGGGCTGTCTGCACAGGCAGGTGAA----AGGGAAGTTACGGTCTGCTgttggttataataagtcacagattattgtgctttctcagataattaaa-gaaataataagaggatgtataattagaacacttagtcacaagactacaataatgcaaag-ttttttattcatctaaagaagaaaacagaagaaaaa----taagcaagaaagagataatattagaaggcagcaaatgacaacgtacagacttaaacccaatgaggtcaacaattacattaaacataatggactcaaacactctaattataagacaaatagtgca-agggggtaaaaataaa----taagtaaataaataactaaccataggctattgacaaaagccataat-ttcagtagaagatacagaaaagttgaaagtaaaaggatagaaaagaaataccagacaaacattcatgaaaaACCACATGGAGATGCCATTTAGAAGAATTACAGGACATAAGTCTCCTGAGACATGGAGTATATGCAGACAGCTCACAATGTGtttttcctttttttc-agagacaggatctattgcccaggctgcaatgcaatggtgatatcatacctcactgtaacctcaaactcctgggctgaagcaattctcctgcc-tcagccttccaagtaactaggacgacaggcatgt--gccgccaca-cct-gC-TATAATGTCTCATTTTCTCATTTGCTGAAGTGTGATCAAAGAAACAATATCATGCCATGTATTTGACTTGCAGCAGGTACACAAC-AATGTCA-GGTGAATGAAGAAATAAAACCACTTAGTAATCC-AAGCCATATCCACATTTACATTTTACAGGTGAGGAGCAACATCCCAGACAAGT-----AAAATAAACTGATTTACATCATCCAGAACAG
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     166606 1619 +   1495729 gggatgtctgggaaagttcttttcaggca-gggaaccttcagtgcagatgcacgagggcagg-aaattgtctgtgttcctggaaggacaaagaggccagaagggctggacacagtgaaactgaagtgaggtccaaggtgtggctagagcaggtagccctggagggtgtgggaaggatgttgacctttgtgctgaatgacatggggagttagaggacagttttgaaaagtgggacatggtaggacttatcccttgaaagcttctctcgggctgctgtgctgagaacagaattgagaggt-ggggactagtaaggcagtggggaaaacggtgggaaaggagtgcagtattccagaatggagacgttgcttaccttgactggggtgtgagcaggggaaatagtgggaagtgaagggattctggatgaatgtgaagatggacttcacagcacttgctaatggatt-tatctgtggtgtgag-aagaagaatcaaggacacctacagtgttggactgagtgagcagaagggtggagctgctgtcagtggagatggggagactctggcaggagcatacagaggagagggcatcgcaggcattcagtGGAGGAGACATCTACGAGGAATGCAGGTGAGGGGCCCAGATGCCTCTGCAGCTACAGATTCATCATCCAATCACTCTCCTACTTCTGCCACCCCTGTGTCTCAGAGCCAGAGCACTGATTCTCCCCTGGGCTGTCTGCACAGGCAGGTGAAAGTCAGGGAAGTTACGGTCTGCTGTTGGTTATAATAAGTCACAGATTATTGTGCTTTCTCAGATAATTAAA-GAAACAACAAGAGGATGTATAATTAGAACACTTAGTCACAAGACtacaataatgcaaag-ttttttattcatctaaagaaggaaacagaagaaaaacagttgagcaagagagagataatattagaaggcagcaaatgacaatgtacagacttaaacccaatgaggtcaacaattacattaaacataatggactcaaatactctaattacaagacaaatagtgca-agggggtaaaaataaa----taagtaaataaataactaaccgtaggctattgacaaaagccataat-ttcagtagaagatacagaaaagttgaaagtaaaaggatagaaaagaaataccagacaaacattcatgaaaaACCACATGGAGATGCCATTTAGAAGAATTACAGGCCATGAGTCTCCTGAGACATGGAGTACATGCAGGCAGCTCACACTGTGtttttcgtttttttc-agagacagggtctgttgcccaggctgcaatgcaatggtgatatcatacctcactgtaacctcaaactcctgggctgaagcaattctcctgcc-tcagccttcagagtagctaggatgacaggcatgt--gccgccacA-GCT-GC-TATAATGTCTCATTTTCTCATTTGCTGAGGTGTGATCAAGGAAACAATATCGTGCCATGTATTTGACTTGCAGCAGGTACACAAC-AATGTCA-GGTGAATGAAGAAATAAAACCACTTAGTAATCC-AAGCCATATCCACATTTACATTTTACAGGTGAGGAGCAACATCCCAGACAAGT-----AAAATAAACTGATTTACATCATCCAAAGCAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     333518 1614 -    863181 gggatgtctgggaaagttcttttcaggca-gggaaccttcagtgcagatgcacgagggcagg-aaattgtctgtgtt-ctggaaggatgaagaggccagaagggctggacacagagaaactgaagtgaggtccaaggtgtggctagagcaggtagccctggagggtgtgggaaggatgttgacctttgctctgaatgacatggggagttagaggacagtgttgaaaagtgggacatggtaggacttaccctttgaaagcttctctctggctgctgtgataagaacagaagtgagaggt-ggggaccagtgaggcagtgggtaaaacggtgggaaaggagtggaatattccagaatggagatgttgcttaccttgactcgggtgtgagcaggcaaaatagtgggaagtgaagggattatggatgaatgtgaagatggacttcacagcacttgctaatggatt-tatctgtggtgtgag-aagaagaatcaagggcacctacagtgttggactgagtgagcagaagggtggagctgctgtcagtggagatggggagactctggcaggagcatacagaggagagggcatcgcaggcattcagtGGAGGAGACATCTACGAGGAATGCATGTGAGGGGCCCAGATGCCTCTGCAGCTACAGATTCATCATCCAACCACTCTCCTACTTCCACCACCCCTGTGTCTCAGAGCCAGAGCACTGATTCTCCCCTGGGCTGTCTGCACAGGCAGGTGGAAGTCAGGGAAGTTACGGtctgctgttggttataataagtcacagattattgtgctttctcagataattaaa-gaaataataagaggatgtataattagaacacttagtcacaaaactacaataatgcaaag-ttttttattcatctaaagaaggaaacagaagaaaaatagttgagccagaaagagataatattagaaggcagcaaatgacaatgtatagacttaatcccaatgaggtcaacaattacattaaacataatggactcaaacactctaattacaagacaaatagtgcagagggggtaaaaataaa----taagtaaataaataaataaccataggctatttacaaaagccataat-ttcagtagaagatatagaaaagttgaaagtaaaaagat-----agaaataccagacaaacattcatgaaaaACCACATGGAGATGCCATTTAGAAAAATTACAGGACATGAGTCTCCTGAGACATGGAGCACATGCAGGCAGCTCACACTGTGttttccctttttttc-agagacagggtctgttgcccaggctgcaatgcaatggtgatatcatacctcactgtaacctcaaactcctgggctgaagcaattctcctgcc-tcagccttccgagtagctaggatgacaggcatgt--gccgccaca-cct-gC-TATAATGTCTCATTTTCTCATTTGCTGAGGTGTGATCAAGGAAACAATATCATGCCATGTATTTGACTTGCAGCAGGTACACAAC-AATGTCA-GGTGAATGAAGAAATAAAACCACTTAGTAATCC-AAGCCATATCCACATTTACATTTTACAGGTGAGGAGCAACATCCCAGACAAGT-----AAAATAAACTGATTTACGTCATCCAGAGCAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29368813 1617 -  71996105 gggatgtctgggaaagttcttttcaggca-gggaactttcagtgcagattcactagggcagg-aaattgtctgtgttcctggaaggacaaagaggccggaagggctggacacagagaaactgaagtgaggtcagaggtgtggacagagcaggtagccctggagggtgtgggaagggtgttgacctttgctctgaatgacatggggagttagaggacagtgttgaaaagtgggacatggtaggacttatcccttgaaagcttctctctggctgctgtgctgagaacagaattgagaggt-ggggaccagtgaggcagtggggaaaacagtgggaaaggagtggaatattccagaatggagatgttgcttaccttgactggggtgtgagcaggggaattcgtgggaactgaagggattatggatgaatgtgaagatggacttcacagcacttgctaatggatt-tatctgtggtgtgag-aagaagaatcaagggcacctacagtgttggactgagggagcagaagggtggagctgctgtcagtggagatggggagactctggcaggagcaTACAGAGGAGAGGGCATCGCAGGCATTCGGTGGAGGAGACATCTACGAGGAATGCAGGTGAGGGGCCCAGATGCCTCTGCAGCTACAGATTCATCATCCAATCACTCTCCTACTTCCGCCACCCCTGTGTCTCAGAGCCAGAGCACTGATTCTCCCCTGGGCTGTCTGCACAGGCAGGTGAAAGTCAGGGAAGTTACGGtctgctgttggttatagtaagtcacagattattgtgctttctcagataattaaa-gaaataataagaggatgtataattagaacacttagtcacaagactacaataatgcaaaa-ttttttattcatctaaagaaggaaacagaagaaaaatagttgagccagaaagagataatattagaaggcagcaaatgacaatgtacagacttaaacccaatgaggtcaacaattacattaaacataatggactcaaacactctaattacaagacaaatagtgca-agggggtaaaaataaataagtaagtaaataaataaataaccgtaggctattgacaaaagccataat-ttcagtagaagatacagaaaagttgaaagtaaaaggat-----agaaataccagacaaacattcatgaaaaACCACATGGAGAAGCCATTTAG-AAAATTACAGGACATGAGTCTCCTGAGACATGGAGTACATGCAGGCAGCTCACAATGTGtttttcctttttttc-agagacagtatctattgcccaggctgcaatgcaatggtgatatcatacctcagtgtaacctcaaactcctgggctgaagcaattctcctgcc-tcagccttccgagtagctaggacgacaggcatgt--gccgccaca-cct-gC-TATAATGTCTCATTTTCTCATTTGCTGAGGTGTGATCAAGGAAACAATATCGTGCCATGTATTTGACTTGCAGCAGGTACACAAC-AATGTCA-GGTGAATGAAGAAATAAAACCACTTAGTAATCC-AAGCCATATCCACATTTACATTTTACAGGTGAGAAGCAACATCCCAGACAAGT-----AAAATAAACTGATTTACATCATCCAGAGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     145277 1611 -    735854 gggatgtctgggaaagttcttttcaggca-gggaaccttcagtgcagatgcactagggcagg-aaattgtctgtgttcctggaaggataaagaggtcagaagggttgaacagagagaaactgaaatgaggtcagaggtgtggacagagcaggtagccctggagggtgtgggaagggtgttgacctttgctctgaatgacatggggagttagaggacagttttgaaaagtgggacatggtaggacttatcccttgaaagcttctctctggctgctgtgctgagaacagaattgagaggtgggggactagtaaggcagtgtggaaaacagtgggaaaggagtggaatattccagaatggagatgttgcttaccttgactggggtgtgagcaggggaaatagtgggaagtgaagggattctggatgaatgtgaagatggacttcacagcacttgctaatggatt-tatctgtggtgtgag-aagaagaatcaaggacacctacagtgttggactgagtgagcagaagggtggagctgctgtcagtggagatggggagactctggcaggagcatacagaggagagggcatcgcaggcattcagtGGAGGAGACATCTACGAGGAATGCAGGTGAGGGGCCCAGATGCCTCTGCAGCTACAGATTCATCATCCAATCACTCTCCTACTTCCGCCACCCTTGTGTCTCAGAGCCAGAGCACTGATTCTCCCCTGGGCTGTCTGCACAGGCAGGTGAA----AGGGAAGTTACGGtctgctgttggttataataagtcacagattattgtgctttcttagataattaaa-gaaataataagaggatgtaaaattagaacacttagtcacaagactacaataatgcaaag-ttttttattcatctaaagaaggaaacagaagaataatagttgagcaagaaagagataatactagaaggcagcaaatgacaatgtacagacttaaacccaatgaggtcaacaattacattaaacataatggactcagacactccaattacaagacaaatagtgca-agggggtaaaaataaa----taagtaaataaataactaaccgtaggctattgacaaaagccataat-ttcagtagaagatacagaaaagttgaaagtaaaaggat-----agaaataccagacaaacattcatgaaaaACCACATGGAGATGCCATTTAGAAAAATTACAGGACATGGGTCTCCTGAGACATGGAGCACACGCAGGCAGCTCACACTGTGtttttcctttttttc-agagacagggtctgttgcccaggctgcaatgcaatggtgatatcatacctcactggaacctcaaactcctgggctgaagcaattctcctgcc-tcagccttccgagtaactaggacgacaggcatgt--gccgccata-cct-gC-TATAATGTCTCATTTTCTCATTTGCTGAGGTGTGATCAAGGAAACAATATCGTGCCATGTATTTGACTTGCAGCAGGTGCACAAC-GATGTCA-GGTGAATGAAGAAATAAAACCATTTAGTAATCC-AAGCCATATCCACATTTACATTTTACAGGTGAGGAGCAACATCCCAGACAAGT-----AAAATAAACTGATTTACATCATCCAGAGCAG
i manLeu1.NW_012107142v1   C 0 C 0
s saiBol1.JH378341           128462 1580 +    515838 aggatgactgggaaagctcttttcaggca--ggaaccttcagtgccgatgcactagggcaggaaaagtgtctgttttcctggaaggaggaagaggccag-agggctggacagagagaaactgaaatgaggtcagaggtgtggccagagcagggaggcctggagggtgtaggaagggttttgacctttgctctgaatgacatggggagttaaaggacagttttgaaaagtgggacatggtgggacttatcctttgaaagcttctctctggctgctgtgctgagaacagaattgggaggttggggacaagtgaggcagtaggg-aatcggtggggaaggagtgcagtattccaggatggagacgctggttaccttgactgaggtgtgagcaggggaaatggtgggaagtgatgagattccagatcaatttgaggatggaattcaaagcacttgctaatggattgtatctgtggtgtgagaaagaagaatcaaggacacccacagtgttggactgagtgagtagaagggcggagctgctgtcagtggagatggggagactctggcaggagcatacagaggagagggcattgcaggcattcagtGGAGGAGACAACTATGAGGAGTGCAGGTGAGGGGCCCGGATGCCTCTGCAGCTACAGCTTCACCATCCAGTTACTCTCCTGCTTCCAC--CCGCTGTGTCTCAGAGCCAGAGCACTGATTCTCCCCTGGGCTGTCTGCACAGGTAGGTGGAAGTCAGGGAAATTATGATCTGCTGTTGGTTATAATAAACCATGAATTATTGTGCTTTCTCAGATAATTAAA-AAAATAAT--GAGAAGTTGTAGCTAGAACAGTTATTTAGAAGACCACAATAATGCAAAATTTTTTTATTCATCAAAGGAAGGCAACAGAAGAAAAATAGTTGAGTGAAAAAGAGATAATATTAGAAGGCagcaaata------------------------------aacaatgatattaaacataacggactcacacactccaatgacaagacaaatagtgca-gggggg-gaaaacaag----tcaatacataag----taaacataggctatttacaaaagccataaatttcagtagaaggtacagaaaagttgaaagtaaaaggatagaaaagaaataccaaacattCATGAGT----AACCACATGGAAATGCCATTTAGAGAAATTACAGGACATGAATCTCACGAAACACAGAGTACATGTAGACTGCTCACAATGtc--tttactttttctc-agagacagagtctgttgcccaggctgaaaagcaatggtgatatcatacctcattgtaacctcagactcctggtctgaagtgattctcctgcc-tcagcctcccaagtagttaggactacaggtgtgt--gccaccaca-gctggc-TATAATGTCTCATTTTCTCATCTGATGTGGTGTGATCAAGGAAGCAATGTCATGCCATGTGTTTGACTTGCAGTAAGAATACAA----TATCA-GGAGAATGAAGAAATAAAACCACTTAGTAATTC-AGGTCATGTCCACATTTACATTTTACAGATGAGAAGTAACATCTCAAACAAGTAAAGTAAAATCAATTGATTTTGATCATCCAAAGCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     634234 1596 -   1771730 aagatgactgggaaagctctttccaggca--ggaagcttcagtgcagatgcactagggcagg-aaagtgtctgcgttcctggaaggaggaagaggccagcagggctggac--agagaaaccaaaatgaggtcagaggtgtggccagagcagggaggcctggagggtgtgggaatggttttgacctttgctgtgaatgacatggggagttagaggacagttttgaaaagtgggatgtggtaggacttatcttttgaaagct----gctggctgctgtgctgagaacagaattgagaggtgggggacaagtgaggcagtaggg-aaatgctggggaaggagagcagtattccaggatggagacgctggttaccttgactggggtgtgagcgggggaaatggtgggaagtgatacgattccggatgaatttgaagatggacttcacagcacttgctaatggattgcatctgtggtgtgagaaagaagaatcaaggacacccacagtgttggactgagtgagtagaagggtggagctgctgtccgtggagacggggagactctggcaggagcaTACGGAGGAGAGGGCATGGCGGGCATTCAGTGGAGGAGACATCTACGAGGAGTGCAGGTGAGGGGCCCGGATGCCTCTGCAGCTACAGCTTCACCACCCAGGTACTCTCCTGCTTCCAC--CCCCTGTGTCTCAGAGCCAGAGTGCTGCTTCT-CCCTGGGCTGTCTGCACAGGTAGGTGGAAGTCAGGGAAGTTACGGTCTGCTGTTGGTTAtaataagccatggattattgtgctttctcagataattaaa-ttaataataaaagaatttgtaactagaacacttattcagaagactacaataatgcaaa--ttttttattcatctaaagacggcaatagaagaaaaattgttgaacaaaaaagagataatattagaaggcagcaaatgacaatgtacagacttaagcccaataaggtcaacaatgacattaaacataaagaactgacacactccaatgacgagacaaatagtgca-gagggg-aaaaataag----tcaatatataaa----taactgtaggctgtttacaaaagccataaa-ttcagtagaagatacaaaaaagttgaaaggaaaaaggtagaaaataaataccagacaaacattaatga-aaaCCACACGGAGATGCCATTTAGAAAAATTACATGATGTGAATCTCCGGAGACATAGAGTACATGTAGACAGCTTACCATGtctttttacttttttttaagaaacattgtctattgcccaggctgaa----------------atacctcaatgtaacctcaaacttctgggctgaagcaattctcctgcc-tcagccttacaaatagctaggactacagacatgt--gccagcaca-cctggc-taGAACGTCTCATTTTCTCATTTGATCTGGTGTGATCAAGGAAGTAATATCATACCATGTATTTGACTTGCAGTAGGTGCACAACAATTACCA-GGGGAATGAAGAAATAAAACCACTTAGTAATTC-AACCCATATCCACATGTACATTTTACAGATGAGGAGCAACATTTCAAACGAACAACGTATAATAAATTGATTTCCATCATCCAGAGCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     232751 1597 -    383796 aggatgactgggaaagctgttttcaggca--ggaaccttcagtgcagatgcactagggcagg-aaggtgtctgtgttcctggaaggaggaagaggccagaagggctggacagagagaaactgaaataaagtcagaggtgtggccagagcagataggtctggatggtgtgggaagggttttgacctttgttctgaatgacacggagagttagaggacagttttgaaaag-gggatatggtaggacttatcctt--------------tggttgctgtgctgagaacagaattgggaggtgagggacaagtgaggcagtaggg-aaatgctggggaaggagtgcagtattccaggatggagacgctggttaccttgactggggtgtgagcaggggaaatggtgggaagtgatgggattcttggtgaatttgaagatggacttcacagcacttgctaatggattgtatc--tggtgtgagaaagaagaatcaaggacacccacagtgtgggactgagtgagtagaagggtggagctgctgtcagtggaggcggggaga--ctggcaggagcatacggaggagagggcatcgcaggcattcagtGGAGGAGACATCTACGAGGAGTGCA-GTGAGGGGCCCGGATGCCTCTGCAGCTACAGCTTCACCATCCAGTCACTCTCCTGCTTCCAC--CCCCTGTGTCTCAGAGCCAGAGCACTGATTCTCCCCTGGGCTGTCTGCACAGGTAGGTGAAAGTCAGGGAAGTTATGGTCTGCTGTTGGTTATAATAAGTCACGGATTATTGTGCCTTCTCAGATAATTAAA-GAAATAATAAGAGAAGTTGTAACTAGAACAGTTATTTAGAAGACCACAATAATGCAAAG-TTTCTTATTCATCTGGagaaggcaacagaagaaaagtagttgagtcaaaaagagataatattagaaggcagcaaatgacaatgtacagactgaaacccaatgaggccaacgatgacattaaacataatggactcacacactccaatgacaagacacacactgca-gaggggtaaagagaag----tcagtccgtaaa----tatccataggctacttacagaagccataat-ttcagtagaaggtacagaaaagttgaaagtaaaaggatagaaaagaaatatcagacacacattCATGAGAAACCACATGAAAATGACATTTAGAAAAATCACAGGACATGACTCTCATGAGACACGGAGTCCATGTAGACAGCTCACAGTGTC--TTTACttttttc--acaaacagggtctgttgcccaggctgaaatgcaatggtgatatcatatctcactgtaacctctatctcctgggctgaagtgattctcctgcc-tcagtctcccaagtagctaggactacaggtgtga--gcccccaca-cctggc-taTAATGTCTAATTTTCTCATCTGATGTGGCATGATCAAGGAAACAATATCATGCCATGTGTTTGA-TTGCAGTAAGAATACAACAAATATCA-GGGGAATGAAGAAATAAAACCACTTAGTAATTC-AAGCCAGGTCCACATTTACATTTTACAGATGAGGAGCAACATCTCAAACAAGTAAAGTTAAATAAATTGATTTTCATCATCCAGAGCAG
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464    5 +  18854210 I
e calJac3.chr4             30309321 5120 + 171630274 I
e colAng1.NW_012115577v1     114624 1730 -   1829203 M
e macFas5.chr4             29963949 33443 - 170955103 I

a score=14976.000000
s hg38.chr6_GL000254v2_alt  1356909 2 +   4827813 AA
s panTro5.chr6             30227772 2 + 175400573 AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30457955 2 + 173848474 AA
i panPan2.chr6             C 0 N 0
s gorGor5.CYUI01015528v1     167244 2 +   2037526 AA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74836995 2 + 122973662 AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30679943 2 + 172585720 AA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     168225 2 +   1495729 AA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     335132 2 -    863181 AA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29370430 2 -  71996105 AA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     146888 2 -    735854 AA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     116354 2 -   1829203 AA
i colAng1.NW_012115577v1   M 1730 C 0
s saiBol1.JH378341           130042 2 +    515838 AA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     635830 2 -   1771730 AA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     234348 2 -    383796 AG
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464 5 +  18854210 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=1217724.000000
s hg38.chr6_GL000254v2_alt  1356911 178 +   4827813 TCGAG-AACACATTCCCTGTGCTAAAGGAATCAGAGCTCTACTAGGGGTCATAGCAGATATCAT-GCAAGTCACATATGTTAATTACTAG-AACAGGAATTGATACATTTCAAGATATACTAAACAAAGGGTTTGGAAGGATTAACTGAATGCAGAAATAGAGGAAGAAAATGGATTTGTT
s panTro5.chr6             30227774 178 + 175400573 TCGAG-AACACATTCCCTGTGCTAAAGGAATCAGAGCTCTACTAGGGGTCATAGCAGATATCAT-GCAAGTCAGACATGCTAATTACTAG-AACTGGAATTGATACATTTCAAGATATACTAAACAAAGGGTTTGGAAGGATTAACTGAATGCAGAAATAGAGGAAGAAAATGGATTTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30293120 178 + 173848474 TCGAG-AACACATTCCCTGTGCTAAAGGAATCAGAGCTCTACTAGGGGTCATAGCAGATATCAT-GCAAGTCACATATGTTAATTACTAG-AACTGGAGTTGATACATTTTGAGATATACTAAACCAAGGGTTTGGAAGGATTAACTGAATGCAGAAATAAAGGAAGAAAATAGATTTGTT
i panPan2.chr6             N 0 C 0
s gorGor5.CYUI01015528v1     167246 180 +   2037526 TTGAGAAACACATTCCCTGTGCTAAAGGAATCAGAGCTCTACTAGGGGTCATAGCAGATATCATGGCAAGTCAGACATGCT-ATTACTAGAAACTGGAAATGATACATTTCAAGATATACTAAACAAAGGGTTTGGAAGGATTAACTGAATGCAGAAATAGAGGAAGAAAATGGATTTGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74836997 178 + 122973662 TCGAG-AACACATTCCCTGTGCTAAAGGAATCAGAGCTCTACTAGGGGTCATAGCTGATATCAT-GCAAGTCAGACACGCTAATTACTAG-AACTGGAATTGATACATTTCAAGATATACTAAAGAAAGGGTTTGGAAGGATTAACTGAATGCAGAAATAGAGGAAGAAAATGGATTTGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30679945 177 + 172585720 TCGAG-AACATATTCCCTGTGCTAAAGGAATCAGAGCTCTACCAGCGGTCATAGCAGGTATCAT-GCAAGTCAGATATGCTAATTACTAG-AATTAGAATTGATAC-TTTTGAGATACACTAAACAAAGGGTTTGGAAGGATTAACTGAATGCAGACATAGAGGAAGAAAATTGATTTGTT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     168227 178 +   1495729 TCGAG-AACATATTCCCTGTGCTAAAGGAATCAGAGCTCTACCAGGGGTCATAGCAGGTATCAT-GCAAGTCAGATACGCTAATTACTAG-AATTGGAATTGATACATTTTGAGATATACTAAACAAAGGGTTTGGGAGGATTAACTGAATGCAGACATAGAGGAAGAAAATTGATTTGTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     335134 178 -    863181 TCGAG-AACACATTCCCTGTGCTAAAGTAATCAGAGCTCTACCAGGGGTCATAGCAGGTATCAT-GCAAGTCAGATACGCTAATTACTAG-AATGGGAATTGATACATTCTGAGATATACTAAACAAAGGGTTTGGGAGGATTAACTGAATGCAGACATAGAGGAAGAAAATTGATTTGTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29370432 178 -  71996105 TCGAG-AACATATTCCCTGTGCTAAAGGAATCAGAGCTCTACCAGGGGTCATAGCAGGTATCAC-GCAAGTCAGATACGCTAATTACTAG-AATTGGAATTGATACATTTTGAGATATACTAAACAAAGGGTTTGGGAGGATTAACTGAATGCAGACATAGAGGAAGAAAATTGATTTGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     146890 177 -    735854 TCGAG-AACACATTCCCTGTGCTAAAGGAATCAGAGCTCTACCAGGGGTCATAGCAGGTATCAT-GCAAGTCA-ATACGCTAATTACTAG-AATTGGAATTGATACATTTTGAGATATACTAAACAAAGGGTTTGGAAGGATTAACTGAATGCAGACATAGAGGAAGAAAATTGATTTGTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     116356 178 -   1829203 TCGAG-AACATATTCCCTGTGCTAAAGGAATCAGAGCTCTACCAGGGGTCATAGCAGGTACCAT-GCAAGTCAGATACGCTAATTACTGG-AATTGGAATTGATAAATTTCAAGATATACTAAACAAAGGGTTTGGAAGGATTAACTGAATGCAGACATAGAGAAAGAAAATGGATTTACT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           130044 164 +    515838 TCGAT-AACACTTTCCCTGTGCTAAAGGAATCAGAGCTCTAC-GGAGGTCATAGCAGGTATCAT-GAA------------CTGTTACTAG-ATTTGGAATTGATACAATTCAATATATACTAAACAAAGAGTCTGGAAGGATTAACTGAATGCAAAGATAAAATAATAAAATGAATTTG-T
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     635832 178 -   1771730 TCGAG-AACACATTCCCTGGACTAAAGGAATCAGAGCTCTACTAGGGGTCATAGCAGGCATCAT-GCAAGTCAGATATGCTAGTTACTAG-AACTGGAATTGATACATTTCAAGATATACTAAACAAAGAGTGTGGAAGGGTTAACTGAATGCAGACATAAAGGAAGAAAATGCATTTGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     234350 164 -    383796 TTGAG-AACACATTCCCTGTGCTAAAGGAATCAGAGCTCTAC-TGAGGTCACAGC-GTTATCAT-GAA------------TTGCTACTAG-AATGGGAATTGATACATTTCAAGATATACTAAACAAAGGGTGTGGAAGGATTAACTGAATGCAGAGATAAAAGAAGAAAACGGATTTGTT
i aotNan1.NW_018496904v1   C 0 T 77877
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=8281.000000
s hg38.chr6_GL000254v2_alt  1357089 1 +   4827813 T
s panTro5.chr6             30227952 1 + 175400573 T
i panTro5.chr6             C 0 I 2545
s panPan2.chr6             30293298 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     167426 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74837175 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30680122 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     168405 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     335312 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29370610 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     147067 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     116534 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           130208 1 +    515838 T
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     636010 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     156637 1 -    383796 T
i aotNan1.NW_018496904v1   T 77877 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464 5 +  18854210 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=40521.000000
s hg38.chr6_GL000254v2_alt  1357090 5 +   4827813 AAAAG
s panTro5.chr6             30230498 5 + 175400573 AAAAG
i panTro5.chr6             I 2545 C 0
s panPan2.chr6             30293299 5 + 173848474 AAAAG
i panPan2.chr6             C 0 N 0
s gorGor5.CYUI01015528v1     167427 5 +   2037526 AAAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74837176 5 + 122973662 AAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30680123 5 + 172585720 AAAAA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     168406 5 +   1495729 AAAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     335313 5 -    863181 AAAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29370611 5 -  71996105 AAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     147068 5 -    735854 AAAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     116535 5 -   1829203 AAAAG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           130209 5 +    515838 AAAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     636011 5 -   1771730 AAAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     156638 5 -    383796 AAAAG
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464 5 +  18854210 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=377527.000000
s hg38.chr6_GL000254v2_alt  1357095 61 +   4827813 ATGGTTAGAATCTTTAAAGAAACAAC-ATTTTTTTAAAGTGGCC-TTATGTGGAC-CAAAGCAG
s panTro5.chr6             30230503 61 + 175400573 ATGGTTAGAATCTTTAAAGAAACAAC-ATTTTTTTAAAGTGGCC-TTATGTTGAC-CAAAGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30461046 61 + 173848474 ATGGTTAGAATCTTTAAAGAAACAAC-ATTTTTTTAAAGTGGCC-TTATGTTGAC-CAAAGCAG
i panPan2.chr6             N 0 C 0
s gorGor5.CYUI01015528v1     167432 63 +   2037526 ATGGTTAGAATCTTTAAAGAAACAAC-ATTTTTTTAAAGTGGCCTTTATGTGGACACAAAGCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74837181 61 + 122973662 ATGGTTGGAGTCTTTAAAGAAACAAC-ATTTTCTTAAAGTGGCC-TTATGTGGAC-CAAAGCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30680128 61 + 172585720 ATGGATAGAATCTTTAAATAAACAAC-TTTTTTTTTAAGTGGCC-TTATGTGGAC-CAAAGTAA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     168411 60 +   1495729 ATGGATAGAATCTTTAAAGAAACAAC--ATTTTTTAAAGTGACC-TTATGTGGCC-CAAAGTAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     335318 61 -    863181 ATGGATAGAATCTTTAAAGAAACAAC-ATTTTTTTTAAGTGACC-TTATGTGGCC-CAAAGTAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29370616 60 -  71996105 ATGGATAGAATCTTTAAAGAAACAAC--ATTTTTTAAAGTGACC-TTATGTGGCC-CAAAGTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     147073 61 -    735854 ATGGATAGAATCTTTAAAGAAAAAAC-TTTTTTTTTAAGTGGAC-TTATGTGGAC-CAAAGTAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     116540 62 -   1829203 ATGAATAGAATCTTTAAAGAAACAACATTTTTTTTAAAGTGGCC-TTATGTGGAC-CAAAGCAG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           130214 51 +    515838 ACGGACAAAATCTTTAA-----------TTTTTTTAAAGTGGAT-TTATGTGGAC-CAAAGCAG
i saiBol1.JH378341         C 0 I 9380
s cebCap1.NW_016107755v1     636016 60 -   1771730 ATGGATAGAATCTTTAAAGAAACAGC--TTTTTTTAAAGTGGCC-TTATGTGGAC-CAAAGCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     156643 60 -    383796 ATGGACAGAATCTTTAAAGAAACAAT--CTTTTTTACAGTGGCC-TTATGTGGAC-CAAAGCAG
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464  5 +  18854210 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=1569940.000000
s hg38.chr6_GL000254v2_alt  1357156 258 +   4827813 AGATGAACTCAAGTGTCAGGTGGGAAAATGC----CTAAGTGCAGCTTCTAGAcccaagggagacctaaaaatcctgggaca-ttttcggttgtcacatggggattggtgggagggggtgagtgggg-tgttgctggc-aaacctcccacaatgcaca-ggacagaccactcc--acaagattctctgtcccaaattgttaatagtgctgctgttgagaaacccGccccagaggtaaatgctgtaatgtcctcaccatttcacagatt
s panTro5.chr6             30230564 258 + 175400573 AGATGAACTCAAGTGTCAGGTGGGAAAATGC----CTAAGTGCAGCTTCTAGAcccaagggagacctaaaaatcctgggaca-ttttcggttgtcacatggggattggtgggagggggtgaatgggg-tgctgctggc-aaacctcccacaatgcaca-ggacagaccactcc--acaagattctctgtcccaaattgttaatagtgctgctgttgagaaaccTGccccagaggtaaatgctgtaatgtcctcaccatttcacagatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30461107 258 + 173848474 AGATGAACTCAAGTGTCAGGTGGGAAAATGC----CTAAGTGCAGCTTCTAGAcccaagggagacctaaaaatcctgggaca-ttttcggttgtcacatggggattggtgggagggggtgagtgggg-tgctgctggc-aaacctcccacaatgcaca-ggacagaccactcc--acaagattctctgtcccaaattgttaatagtgctgctgttgagaaaccTGccccagaggtaaatgctgtaatgtcctcaccatttcacagatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     167495 261 +   2037526 AGATGAACTCAAGTGTCAGGTGGAAAAATGC----CTAAGTGCAGCTTCTAGAcccaaaggagacctaaaaatcctgggacatttttcggttgtcacatggggattggtgggagggggtgagtgggg-tgctgctggcaaaacctcccacaatgcacagggacagaccactcc--acaagattctctgtcccaaattgttaataatgctgctgttgagaaacccGccccagaggtaaatgctgtaatgtcctcaccatttcacagatt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74837242 258 + 122973662 AGATGAGCTCAAGTGTCAGGTGGGAAAATGC----CTAAGTGCAGCTTCCAGAcccaagggagacctaaaaatcctgggaca-ttttcggttgtcacatggggattggtggaagggggtgagtgggg-tgctgctggc-aaacctcccacaatgcaca-ggacagaacactcc--acaagattctctgtcccaaattgttaatagtgctgctgttgagaaacccGccccagaggtaaatgctgtaatgtcctcaccatttcacagatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30680189 260 + 172585720 AGATGAACTCAAGTGTCAGGTGGGAAAATGCCTGACTAAATGCAGCTTCCAGAcccaagggagacctaaaaatcccgggaca-ttttcggttgtcacgtggagattggtgggagcgggtgagtgggggtgctgctggc-aaacctcccacaatgcaca-gggcaggccac-----aagggagtctctgtcccaaactgttaatagtgctgctgttgagaaacTTGCCCCGgaggtaagtgctgtagtgtcctcaccatttcaccgatt
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     168471 260 +   1495729 AGATGAGCTCAAGTGTCAGGTGGGAAAATGCCTGACTAAGTGCAGCTTCCAGAcccaagggagacctaaaaatcccgggaca-ttttcggttgtcatatggggattggtgggagggggtgagtgggggtgctgccggc-aaacttcccacaatgcaca-ggccactccac-----aagggagtctctgtcccaaactgtttatattgctgctgttgagaaacccGccccagaggtaagtgctgtagtgtcctcaccatttcaccgatt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     335379 260 -    863181 AGATCAGCTCAAGTGTCAGGTGGGAAAATGCCTGACTAAGTGCAGCTTCCAGAcccaagggagacctaaaaatcccgggaca-ttttcggttgtcacatgggaattagtgggaggaggtgagtgggggtgctgccggc-aaacctcccacaatgcaca-gggcactccac-----aagggattctctgtaccaaactgttaatagtgctgctgttgagaaacccGccccagaggtaagtgctgtagtgtcctcaccatttcaccgatt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29370676 260 -  71996105 AGATGAGCTCAAGTGTCAGGTGGAAAAATGCCTGACTAAGTACAGCTTCCAGAcccaagggagacctaaaaatcccgggaca-ttttcggttgtcatatggggattggtgggagggcgtgagtgggggtgctgctggc-aaacctcccacaatgcaca-ggccactccac-----aagggagtctctgtcccaaactgttaatagtgctactgttgagaaacccGccccagaggtaagtgctgtagtgtcctcaccatttcaccgatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     147134 259 -    735854 AGATGAGCTCAAGTGTCAGGTGG-GAAATGCCTGACTAACTGCAGCTTCCAGACCCAAGGGAGACCTAAAAATCCCAGGACA-TTTTCGGTTGTTATATGGGGATTGGTGGGAGGGGGTGAGTGggggtgctgctgtc-aaacctcccacaatgcaca-gggcaggccac-----aagggattctctgtcccaaactgttaatagtgctactgttgagaaacccGCCCCAGAGGTAAGTGCTGTAGTGTCCTCACCATTTCACCGATT
i manLeu1.NW_012107142v1   C 0 I 147
s colAng1.NW_012115577v1     116602 265 -   1829203 AGATGAGCTCAAGTGTCAGGTGGGAAAATGCCTGACTAAGTGCAGCTTCCAGAcccaagggagacctaagaagcctgggaca-ttttcggttgtcatatggggattggtgggaggccgtgagtgaggctgctgctggc-aaacctcccagaatgcaca-ggacaggccactccataagggattctctgtcccaaactgttaatagggctgctgttgagaaaccTaccccagaggtaagtgctgtaatgtcctcaccatttcaccgatt
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     636076 264 -   1771730 AGATGAGCTCAAGTGTCAGGCGGGAAAATGCCTGAGGAACGGCAGCTGCTAGACAcaagggagacctcaaaatcctgggaca-ttttcagttgtcatatggggattggtgggagggagtgagtgggg-tgctgctggc-aaacctcccaaaatccacg-ggacagcccactccacaaatgactctctgtcccaaatggttaacagtgctgctgttgagaaacccGCGCCAgacgtaagtgctgtaatgtcctcaccatttcacagatt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     156703 264 -    383796 AGATGAGCTCAAGTGTCAGGTGGGAAAATGCCTGAGGAAGGGCAGCTCCTAGACACAAGGGAGCCCTTAAAATCctgggaca-ttttcggttgtcatattggagttggtgggagggggtgagtgggg-ttctgctggc-aaacctcccaaaatgcacg-ggacagcccactccacaaggtactctctgtaccaaatggttaacagtgctgccattgagaaaccTGAGCCAgaagtaagtgctgtaatgtcctcaccacttcacagatt
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464   5 +  18854210 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=2664726.000000
s hg38.chr6_GL000254v2_alt  1357414 462 +   4827813 aagaaactgaggcaccagggggagaagtgtcagtaagacctgagctgca-ggttgaatccaggccacttggctacagggtcttggctcCCCTGGTTAAGTCAGGGACCCAGTAGCCGACCACAAACAATCCCAGCTGCAC-GGT-------------------GCCTTCATGGTCTGTGGGCGCCTTCATGGTCTGTGGCGCCCCCTGGTGTTGACACTGGGCCTGTGGCCAAATGAGGCTTGAGGGAAAAGG-AAAAAACAGGTTTGGGT----AGGGGGATACTC--TTTCAGGCTCTCCAGATTTCCAGCCACG------ACTTACGCTCAG-AAAAAATAATGTC------------CACCTTAATTATCTCTCCAACCCTGTTTTTCCCTGTCCCGGCTAGTTCCC--TCCCTTGACT-CCATCAACATCGGCACCTGCCAGACGCCCACCACCCACCATGTAAGGAGTGAAAAGGCCCCAGGACTAAATGACAAGACGAGGTTCCA
s panTro5.chr6             30230822 462 + 175400573 aagaaactgaggcaccagggggagaagtgtcagtaagacctgagctgca-ggttgaatccaggccacttggctgcagggtcttggctcCCCTGGTTAAGTCAGGGACCCAGTAGCCGACCACAAACAATCCCAGCTGCAC-GGT-------------------GCCTTCATGGTCTGTGGGCGCCTTCATGGTCTGTGGCGCCCCCTGGTGTTGACACTGGGCCTGTGGCCAAATGAGGCTTGAGGGAAAAGG-AAAAAACAGGTTTGGGT----AGGGGGATACTC--TTTCAGGCTCTCCAGATTTCCAGCCACG------ACTCACGCTCAG-AAAAAATAATGTC------------CACCTTAATTATCTCTCCAACCCTGTTTTTCCCTGTCCCGGCTAGTTCCC--TCCCTCGACT-CCATCAACATCGGCACCTGCCAGACGCCCACCACCCACCATGTAAGGAGTGAAAAGGCCCCAGGACTAAATGACAAGACGAGGTTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30461365 464 + 173848474 aagaaactgaggcaccagggggagaagtgtcagtaagacctgagctgca-ggttgaatccaggccacttggctgcagggtcttggctcCCCTGGTTAAGTCAGGGACCCAGTAGCCGACCACAAACAATCCCAGCTGCAC-GGT-------------------GCCTTCATGGTCTGTGGGCGCCTTCATGGTCTGTGGCGCCCCCTGGTGTTGACACTGGGCCTGTGGCCAAATGAGGCTTGAGGGAAAAGG-AAAAAACAGGTTTGGGT----AGGGGGATACTCTGTTTCAGGCTCTCCAGATTTCCAGCCACG------ACTCACGCTCAG-AAAAAATAATGTC------------CACCTTAATTATCTCTCCAACCCTGTTTTTCCCTGTCCCGGCTAGTTCCC--TCCCTCGACT-CCATCAACATCGGCACCTGCCAGACGCCCACCACCCACCATGTAAGGAGTGAAAAGGCCCCAGGACTAAATGACAAGACGAGGTTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     167756 461 +   2037526 aagaaactgaggcaccagggggagaagtgtcagtaagacctgagctgcagggttgaatccagg-cacttggctgcagggtcttggctcCCCTGGTTAAGTCAGGGACCCAGTAGCCGACCACAAACAATCCCAGCTGCACAGGT-------------------GCCTTCATGGTCTGTGGGCGCC-TCATGGTCTGTGGCGCCCCCTGGTGTTGACACT-GGCCTGTGGCCAAATGAGGCTTGAGGGAAAAGGAAAAAAACAGGTTTGGGT----A-GGGGATACTC--TTTCAGGCTCTCCAGA-TTCCAGCCACG------ATTTACGCTCAG-AAAAAATAATGTC------------CACCTTAATTATCTCTCCAA-CCTGTTTTTCCCTGTCCCGGCTAGTTCCCCTCCCCTCGACTACCATCAACATCGGCACCTGCCAGACACCCACCACCCACCATGTAAGGAGTGAAAAGG-CCCAGGACTAAATGACAAGACGAGGTTCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74837500 462 + 122973662 aagaaactgaggcaccagggggagaagtgtcggtaggaccagagctgca-ggttgaatccaggccacttggctgcaaggtcttggctcccctggttaagtcaGGAACCCAGTAGCCGACCACAAACAATCCCAGCTGCAC-GGT-------------------GCCTTCATGGTCTGTGGGCGCCTTCATGGTCTGTGGCGCCCCCTGGTGTTCACACTGGGCCTGTGGCCAAATGAGGCTTGAGGGAAAAGG-AAAAAACAGGTTTGGGT----AGGGGGATACTC--TTTCAGGCTTTCCAGATTTCCAGCCACG------ACTTACGCTCAA-AAAAAATAATGTC------------CGCCTTAATTATCTCTCCAACCCTGTTTTTCCCTGTCCAGGCCAGTTCCC--TCCCTCGACT-CCATCAACATCGGCACCTGCCAGACGCCCACCACCCACCATGTGAGGAGTGAAAAGGCCCCAGGATTAAAGGACAAGACGAGGTTCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30680449 449 + 172585720 aagaaactgaggcaccaggggggaaactgtcagtaggaccagagctgca-ggttgaatccaggccacctggctgtagggtcttggctcCCCTGATTAAGTCAGGGACCCGGGAGCCGACCACAAACAATCCCAGCTGCGT-GGT-------------------GCCTTCATGGTCTGTGGGCGCC------------------CCCTGGTGTTGACACTGGGCCTATGGTCAAATGAGGCTTGAGGGAAAAGG-GAAAAACAGGTTTAGGTAGGGAGGGGGATATTC--CTTCAGGCTCTCCAGATTTTGAGCTATG------ACTTACGCTCAGAAAAAAATAATGTC------------CACCTTAATTATCTCTCCAACCCTGTTTTTCCCAGTCCCAGCCAGTTCCC--TGCCTCGACT-CCATCAACATCGGCACCTGCCAGACGTCCAGCACCCACCAAGTAAGGAGTGAAAAGGCCCCAGGACTAAAGGACAAGACAAGGTTCCA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     168731 463 +   1495729 aagaaactgaggcacc-ggggggaaactgtcagtaggaccagagctgca-ggctgaatccaggccacctggctgcagggtcttggctcCCCTGATTAAGTCAGGGACCCGGGAGCCGACCACAAACAATCCCAGCTGCGT-GGTGCCTTCATGGTCTGTGGGCGCCTTCATGGTCTGTGGGCGCC------------------CCCTGGTGTTGACACTGGGCCTGTGGCCAAATGAGACTTGAGGGAAAAGG-AAAAAACAAGTTTGGGT----AGGGGGATATTC--TTTCGGGTTCTTCAGATTTTGAGCTATG------ACTTACGCTCAGAAAAAAATAATGTC------------CACCTTAATTATCTCTCCAACCCTGTTTTTCCCAGTCCCAGCCAGTTCCC--TGCCTCGACT-CCATCAACATCGGCACCTGCCAGACGTCCAGCACCCACCAAGTAAGGAGTGAAAAGACCCCAGGACTAAAGGACAAGACAAGGTTCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     335639 451 -    863181 aagaaactgaggcaccaggggggaaactgtcagtaggaccagagctgca-ggctgaatccaggccacctggctgcagggtcttggctcCACTGATTAAGTCAGGCACCCGGGAGCCGACCACAAACAATCCCAGCCGCGT-GGT-------------------GCCTTCATGGTCTGTGGGCGCC------------------CCCTGGTGTTGACACTGGGTCTGTGGCCAAATGAGGCTTGAGGGAAAAGG-AAAAAACAGGTTTGAGT----AGGGGGATATTC--TTTCAGGCTCTTCAGATTTTGAGCCATGACTTACACTTACACTCAGAAAAAAATAATATC------------CGCCTTAATTATCTCTCCAACCCTGTTTTTCCCAGTCCCGTCCAGTTCCC--TGCCTCGACT-CCATCAACATCGGCATCTGCCAGACGCCCAGCACCCACCAAGTAAGGAGTGAAAAGATCGCAGGACTAAAGGACAAGACGAGATTCCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29370936 445 -  71996105 aagaaactgaggcaccaggggggaaactgtcagtaggaccagagctgca-ggctgaatccaggccacctggctgcagggtcttggctcCCCTGATTAAGTCAGGGACCCGGGAGCCGACCACAAACAATCCCAGCTGAGT-GGT-------------------GCCTTCATGGTCTGTGGGCTCC------------------CCCTGGTGTTGACACTGGGCCTGTGGCCAAATGAGGCTTGAGAGAAAAGG-AAAAAACAGGTTTGGGT----AGGGGGATATTC--TTTCAGGCTCTTCAGATTTTGAGCCATG------ACTTACGCTCAGAAAAAAATAATGTC------------TGCCTTAATTATCTCTCCAACCCTGTTTTTCCCAGTCCCGGCCAGTTCCC--TGCCTCGACT-CCGTCAACATCGGCACCTGCCAGACGCCCAGCACCCACCAAGTAAGGAGTGAAAAGACCGCAGGACTAAAGGACAAGACGAGATTCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     147540 445 -    735854 aAGAAACTGAGGCACCAGGGGGGAAACTGTCAGTAGGACCAGAGCTGCA-GGTTGAATCCAGGCCACCTGGCTGTAGGGTCTTGGCTCCCCTGATTAAGTCAGGGACCCGGGAGCCGACCACAAACAATCCCAGCTGCGT-GGT-------------------GCCTTCATGGTCTGTGGGCGCC------------------CCCTGGTGTTGACACTGGGCCTATGGCCAAATGAGGCTTGAGGGAAAAGG-GGAAAACAGGTTTAGGT----AGGGGGATATTC--TTTCAGGCTCTCCAGATTTTGAGCCATG------ACTTACGCTCAGAAAAAAATAATGTC------------CACCTTAATTATCTCTCCAACCCTGTTTTTCCCAGTCTCGGCCAGTTCCC--TGCCTCGACT-CCATCAACATCGGCACCTGCCAGACGCCCAGCACCCACCAAGTAAGGAGTGAAAAGACCCCAGGACTAAAGGACAAGACGAGGTTCCA
i manLeu1.NW_012107142v1   I 147 C 0
s colAng1.NW_012115577v1     116867 450 -   1829203 aagaaactgaggcaccaggggggaaagtgtcactaggaccagagctgca-ggttgaatccaggccatctagctgcaggatcttggcttccctgattaAGTCAGGGACCCGGGAGCCGACCACAAACAATCCCAGCTGCGT-GGT-------------------GCCTTCATGGTCTGTGGGCGCC------------------CCCTGGTGTTGACACTGGGCCTGTGGCCAAATGAGACTTGAGGGAAAAGG-GGAAAACAGGTTTGGGT----AGGGGGATACTC--CTTCAGGCTCTCCAGATTTTGAGCCATG------ACTTACGCTCAG-AAAAAATAATGTCTGGTTAAGCCCTTGCTTTAATTATCTCTCCAACCCTGTTTTTCCCAGTCCTGGTCAGTTCCC--TCCCTCGACT-CCATCAACATCAGCACCTGCCAGATGCCCAGCACCCACCAAGTAAGGAGTGAAAAGGCCCCAAGACTA------AAGACGAGGTTCCA
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     636340 435 -   1771730 taaaaactgaggcaccaggaggaaaagtgtcagtaggaccagagctgca-agttgaatccaggcggcctggctgcaaagtcTTGTCTTC-CTGGTCAAGTCAAGGACCCAGT-----ACCACAGACAATCCGGGCTGCGC-GGT-------------------GCCTTCATGGTCTGTGGGCGCC------------------CCCTGGTGTTGACACTAGGCCTGTGGCTAAATGAGCCTTGTGGGAAAAGG-CAAAAACAGCTTTGGGC----AGGGAGATACAC--CGTCAGGCCCTCCACATTTCAAGCCATT------ACTTACGCTCAG-AAAA---AATGTC------------TGCCCTAATTATCTCTCCAACCCCGCTTTTCCCAGTCCCGGCCAGTGTCC--TTCCTCGACT-CCATCAACATCAGCACCTGCCAGATGCCCACCACCCAGCATGTGAGGAGTGAAAATGTCCCAGGACTAAAGGACAAGACTAGGTTCCA
i cebCap1.NW_016107755v1   C 0 I 24
s aotNan1.NW_018496904v1     156967 429 -    383796 taaaaactgaagcaccaggaggaaaagtgtcagtaggaccagagctgca-agttgaatccaggcggcctggctgcaaagtcTTGCCTTC-CTGGTTAAGT--------CAGT-----ATCACAGACAATCCTGGCTGTGC-GGT-------------------GCCTTCATGGTCTTTGTTCGCC------------------CCCTGGTGTTGACACTAGGCCTGTGGCTAAATGAGCCTTGTTGGAAAAGG-CAAAAACAGCTTTGGGT----AGGGAGATACAC--CTTCAGGCCCTCCACATTTCAAGACATG------ACTTACGCTCAG-AGAAAATAATGTC------------TGCCTTAATTATCTCTCAAACCCTGC-TTTCCCAGTCCCGGCCAGTGTCC--TCCCTCGACT-CCATCAACATCAGCACCTGCCAGATGCCCACCACCCACCATGTGAAGAGTGAAAAGGCCCCAGGACTAAAGGACAAGACTAGGTTCCA
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464   5 +  18854210 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=2295195.000000
s hg38.chr6_GL000254v2_alt  1357876 426 +   4827813 CCCCAGCCAT-CCCTCCCCTCCTAGAGC-TCTAGCTCTGTGCCTTTAGTGCTTAGGCTCTTAACCTGGGGTCCAGGAACCCACTTTCCTATGACACTGCG-TGAAGAAGTGATGTTACACG-CACACATGACTTCACTACAGGACATTGGATATTAATATTCATCAGATCAGCTAGAGGCCCAAGATACCAC-TCTTCTCCCAACAGTTTGTGATCCTCTGAATTAAAGAAAGGGTAGGGATTGA-GGGAGGCCCTAACTCCAAATCTTCTACCACTTCTAGCGAAGTGCTGAGAAGAAGTGCAAGGTACTCAACCTGCTCTGGGGATACAGCAGGAAAGCAGAGTGTTTACGGATTTCACATTCCATCAAAGAAAATCCATTTTGACAAAATATCCAAGTCACTTTTCTAAGCCCCAGGCAGCAGTTCAAA
s panTro5.chr6             30231284 426 + 175400573 CCCCAGCCAT-CCCTCCCCTCCTAGAGC-TCTAGCTCTGTGCCTTTAGTGCTTAGGCTCTTAACCTGGGGTCCAGGAACCCACTTTCCTATGACACTGCA-TGAAGAAGTGATGTTACACG-CACACATGACTTCACTACAGGACATTGGATATTAATATTCATCAGATCAGCTAGAGGCCCAAGATACCAC-TCTTCTCCCAACAGTTTGTGATCCTCTGAATTAAAGAAAGGGTAGGGATTGA-GGGAGGCCCTAACTCCAAATCTTCTACCACTTCTAGCGAAGTGCTGAGAAGAAGTGCAAGGTACTCAACCTGCTCTGGGGATACAGCAGGAAAGCAGAGTGTTTGCGGATTTCACATTCCATCAAAGAAAATCCATTTTGACAAAATATCCAAGTCACTTTTCTAAGCCCCAGGCAGCAGTTCAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30461829 426 + 173848474 CCCCAGCCAT-CCCTCCCCTCCTAGAGC-TCTAGCTCTGTGCCTTTAGTGCTTAGGCTCTTAACCTGGGGTCCAGGAACCCACTTTCCTATGACACTGCA-TGAAGAAGTGATGTTACACG-CACACATGACTTCACTACAGGACATTGGATATTAATATTCATCAGATCAGCTAGAGGCCCAAGATACCAC-TCTTCTCCCAACAGTTTGTGATCCTCTGAATTAAAGAAAGGGTAGGGATTGA-GGGAGGCCCTAACTCCAAATCTTCTACCACTTCTAGCGAAGTGCTGAGAAGAAGTGCAAGGTACTCAACCTGCTCTGGGGATACAGCAGGAAAGCAGAGTGTTTGCGGATTTCACATTCCATCAAAGAAAATCCATTTTGACAAAATATCCAAGTCACTTTTCTAAGCCCCAGGCAGCAGTTCAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     168217 431 +   2037526 CCCCAGCCATCCCCTCCCCTCCTAGAGCTTCTAGCTCTGTGCCTTTAGTGCTTAGGCTCTTAACCTGGGGTCCAGGAACCCACTTTCCTATGACACTGCGTTGAAGAAGTGATGTTACACGCCACACATGACTTCACTACAGGACATTGGATATTAATATTCATCAGATCAGCTAGAGGCCCAAGATACCACTTCTTCTCCCAACAGTTTGTGATCCTCTGAATTAAAGAAAGGGTAGGGATTGAGGGGAGGCCCTAACTCCAAATCTTCTACCACTTCTAGCGAAGTGCTGAGAAGAAGTGCAAGGTACTCAACCTGCTCTTGGGATACAGCAGGAAAGCAGAGTGTTTGCGGATTTCACATTCCATCAAAGAAAATCCATTTTGACAAAATATCCAAGTCACTTTTCTAAGCCCCAGGCAGCAGTTCAA-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74837962 423 + 122973662 CCCCAGCCAC-CCCTCCCCTCCTAGAGC-TCTAGCTCTGTGCCTTTAGTGCTTAGGCTCTTAACCTGGGGTCCAGGAACCCACTTTCCTATGACACTGCA-TGCAGAAGTGATGTTACATG-CACACACGACTTCATTACAGGACATTGGATATTAATATTCATCAGATCAGCTAGAGGCCCAAGATATCAC-TCTTCCCCCAACAGCTTGTGATCCTCTGAATTAAAGAAAGGGTAGAGATTGA-GGGAGGCCCTAACTCCAAATCTTCTACCACTTCTAGTGAAGTGCTG---AGAAGTGCAAGGTACTCAACCTGCTCTGGGGATACAGCAGGAAAGCAGAGTGTTTGCGGATTTCACATTCCATCAAAGAAATACCATTTTGACAAAATATCCAAGTCACTTTTCTTAGCCCCAGGCAGCAGTTCAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30680898 425 + 172585720 CCCCAGCCAT-CCCTCCCCTCCTAGAGC-TCTAGCTCTGTGCGTTTAGTGCTTAGGCTGTTAACCTGGGGTCTGTGAACCCACTTTTCTATGACACTGCA-TGCAGAAGTGATGTTACATG-CACACATGACTTCATTACAGGACATTGGATATTAATATTCATCAGATCAGCTAGAGGCCCAAGATA-CAC-TCTTCCCCCAACAGTTTGTGATCCTCTGAATTAAAGAAAGGGTAGTGATTGA-GGGAGGCCCTAACTCCAAATCTTCTACCACTTCCAGGAAAGTGCTGAAAAGCAGTGCAAGGCACTCAACCTGCACTGGGGATACAGCAGGAAAGCAGAGCGTTCGCGGATTTCACATTCCATCAAAGAAATACCATTTTGAGAAAATATCCAAGTCACTTTTCTAAGCCCCAGGCAGCAGCTCAAA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     169194 425 +   1495729 CCCCAGCCAT-CCCTCCCCTCCTAGAGC-TCTAGCTCTGTGCGTTTAGTGCTTCGGCTGTTAACCTGGGGTCCGCGAACCCACTTTCCTGTGACACTGCA-TGCAGAAGTGATGTTACATG-CACACATGACTTCATTACAGGACATTGGATATTAATATTCATCAGATCAGCTAGAGGCCCAAGATA-CAC-TCTTCCCCCAACAGTTTGTGATCCTCTGAATTAAAGAAAGGGTAGTGATTGA-GGGAGGCCCTAACTCCAAATCTTCTACCACTTCCAGGAAAGTGCTGAAAAGCAGTGCAAGGTACTCAACCTGCGCTGGGGATACAGCAGGAAAGCAGAGCGTTCGCGGATTTCACATTCCATCAAAGAAATACCATTTTGAGAAAATATCCAAGTCACTTTTCTAAGCCCCAGGCAGCAGCTCAAA
i macNem1.NW_012012100v1   C 0 I 23357
s cerAty1.NW_012002535v1     336090 425 -    863181 CCCCAGCCAT-CCCTCCCCTCCTAGAGC-TCTAGCTCTGTGCGTTTAGTGCTTAGGGTCTTAACCTGGGGTCCGCGAACCCACTTTCCTGTGACACTGCA-TGCAGAAGTAATGTTACATG-CACACATGACTTCATTACAGGATATTGGATATTAATATTCATCAAATTAGCTAGAGGCCCAAGATA-CAC-TCTTCCCCCAACAGCTTGTGATCCTCTCAATTAAAGAAAGGGTAGAGATTGA-GGGAGGCCCTACCTCCAAATCTTCAATCACTTCCAGGGAAGTGCTGAAAAGCAGTGCAAGGTACTCAGCCTGCGCTGGGGATACAGCAGGAAAGCAGAGCGTTCGCGGATTTCACATTCCATTAAAGAAATACCATTTTGAGAAAACATCCAAGTCACTTTTCTAAGCCCCAGGCAGCAGCTCaaa
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29371381 425 -  71996105 CCCCAGCCAT-CCCTCCCCTCCTAGAGC-TCTAGCTCTGTGCGTTTAGTGCTTAGGCTGTTAACCTGGGGTCTGTGAACCCACTTTCCTGTGACACGGCA-TGCAGAAGTGATGTTACATG-CACACATGACTTCATTACAGGACATTGGATATTAATATTCATTCGATCAACGGGGGGCCCAAGATA-CAC-TCTTCCCCCAACAGCTTGTGATCCTCTGAATTAAAGAAAGGGTAGAGATTGA-GGGAGGCTCTAACTCCAAATCTTCAACCCCTTCCAGGGAAGTGCTGAAAAGCAGTGCAAGGTACTCAACCTGCGCTGGGGATAGAGCAGGAAAGCAGAGCGTTCGTGAATTTCACATTCCATCAAAGAAATACCATTTTGAGAAAATATCCAAGTCACTTTTCTAAGCCCCAGGCAGCAACTCaaa
i chlSab2.chr17            C 0 I 7
s manLeu1.NW_012107142v1     147985 425 -    735854 CCCCAGCCAT-CCCTCCCTTCCTAGAGC-TCTAGCTCTGTGCGTTTAGTGCTTAGGCTGTTAACCTGGGGTCCGTGAACCCACTTTCCTGTGACACTGCA-TGCAGAAGTGATGTTACATG-CACACATGACTTCATTACAGGACATTGGATATTAATATTCATCAGATCAGCTAGAGGCCCAAGATA-CAC-TCTTCCGCCAACAGCTTGTGATCCTCTGAATTAAAGAAAGGGTAGTGATTGA-GGGAGGCCCTAACTCCAAATCTTCTACCACTTCCAGGAAAGTGCTGAAAAGCAGTGCAAGGTACTCAACCTGCGCTGGGGATACAGCAGGAAAGCAGAGCGTTCGCGGATTTCACATTCCATCAAAGAAATACCATTTTGAGAAAATATCCAAGTCACTTTTCTAAGCCCCAGGCAGTAGCTCaaa
i manLeu1.NW_012107142v1   C 0 I 7
s colAng1.NW_012115577v1     117317 426 -   1829203 CCCCAGCCAT-CCCTCCCCTCCTAGAGC-TCTAACTCTGTGCCTTTAGTGCTTAGGCTCTTAACCTGGGGTCCGCGAACCCACTTTCCTATAACACTGTA-TGCAGAAGTGATGTTACATG-TACATGTGACTTCATTACAGGACACTGGATATTAATATTCATCAGATCAGCTAGACGCCCAAGATATCAC-TCTTCCCCCAACAGCTTGTGATTCTCTGAATTAAAGAAAGGGTAGAGATTGA-GGAAGACCCTAACTCCCAATCTTCTACCACTTCTAGGAAAGTGCTGAAAAGAAGTGCAAGGTACTCAACCTGCGCTGGGGATACAGCAGGAAAGCAGAGTGTTCACGGATTTCACATTCCTTCGAAGAAATACCATTTTGAGAAAATATCCCAGTCACTTTTCTAAGCCCCAGGCAGCAGCTCAAA
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     157396 425 -    383796 TCCCAGCCAT-CCCTCCCCTCCCAGAGC-TCTAGCTCCATGCCTCTAGTGCTTAGGCTCTTAACCTGGGGCCCAGGAACCCACTCTCCCATGACACTACA-TGCAGAAGTGATGTTATGTG-CACATGTGACTTCCTCACAGGACATTGAATATTAATATTAATCAGATCAG-GAGGGGCACAAGACACAAT-TCTTCCCCCAACAGCCTGTGATCCTCTGAATTAAAGAAAGGGTAGATATCAA-GGGAGGCCCTAGCTCCAAATCTTGTACCACTCCTAGTGATGTTCTGAAAACAAGAGCAAGGTACTCACCCTGCTCTGGGTATACAGCAGGAAAGTAGAGTGTTCATGGATTTCAAATTCCATTAAAGAAATATCATTTTGGCAAAATATCCAAGTCACTTCTCTAAGCCCCAACCAGAAGCTCTAA
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464   5 +  18854210 I
e cebCap1.NW_016107755v1     636775  24 -   1771730 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=1438.000000
s hg38.chr6_GL000254v2_alt  1358302 12 +   4827813 CAAATAACATC-A
s panTro5.chr6             30231710 12 + 175400573 CAAATAACATC-A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30462255 12 + 173848474 CAAATAACATC-A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     168648 12 +   2037526 -AAATAACATCAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74838385 13 + 122973662 CAAACAACATCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30681323  8 + 172585720 -AAAaatca----
i rheMac8.chr4             C 0 I 19
s cerAty1.NW_012002535v1     336516  9 -    863181 aaaaaaaaa----
i cerAty1.NW_012002535v1   I 1 I 4
s chlSab2.chr17            29371813  9 -  71996105 aaaaaaaaa----
i chlSab2.chr17            I 7 I 10
s manLeu1.NW_012107142v1     148417  9 -    735854 aaaaaaaca----
i manLeu1.NW_012107142v1   I 7 I 22
s colAng1.NW_012115577v1     117743  9 -   1829203 TAAACAAAA----
i colAng1.NW_012115577v1   C 0 I 5
s aotNan1.NW_018496904v1     157821 12 -    383796 CAAACAACATCA-
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464  5 +  18854210 I
e cebCap1.NW_016107755v1     636775 24 -   1771730 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macNem1.NW_012012100v1     169619 23357 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=5322.000000
s hg38.chr6_GL000254v2_alt  1358314 9 +   4827813 --AAAAAACCA
s panTro5.chr6             30231722 9 + 175400573 --AAAAACCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30462267 9 + 173848474 --AAAAACCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     168660 9 +   2037526 --AAAAAACCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74838398 9 + 122973662 --AAAAAACCA
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     336529 6 -    863181 --aaaaaa---
i cerAty1.NW_012002535v1   I 4 C 0
s chlSab2.chr17            29371832 6 -  71996105 --aaaaaa---
i chlSab2.chr17            I 10 C 0
s manLeu1.NW_012107142v1     148448 6 -    735854 --aaaaaa---
i manLeu1.NW_012107142v1   I 22 C 0
s colAng1.NW_012115577v1     117757 3 -   1829203 --AAA------
i colAng1.NW_012115577v1   I 5 C 0
s aotNan1.NW_018496904v1     157833 8 -    383796 GAAAAACA---
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464 5 +  18854210 I
e cebCap1.NW_016107755v1     636775 24 -   1771730 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macNem1.NW_012012100v1     169619 23357 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I
e rheMac8.chr4             30681331 19 + 172585720 I

a score=5005.000000
s hg38.chr6_GL000254v2_alt  1358323 1 +   4827813 A
s panTro5.chr6             30231731 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30462276 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     168669 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74838407 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1     192976 1 +   1495729 a
i macNem1.NW_012012100v1   I 23357 C 0
s cerAty1.NW_012002535v1     336535 1 -    863181 a
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29371838 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     148454 1 -    735854 a
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     117760 1 -   1829203 A
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     157841 1 -    383796 A
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464 5 +  18854210 I
e cebCap1.NW_016107755v1     636775 24 -   1771730 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I
e rheMac8.chr4             30681331 19 + 172585720 I

a score=28325.000000
s hg38.chr6_GL000254v2_alt  1358324 6 +   4827813 AATCTT
s panTro5.chr6             30231732 6 + 175400573 AATCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30462277 6 + 173848474 AATCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     168670 6 +   2037526 AATCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74838408 6 + 122973662 AATCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30681350 6 + 172585720 aatcTT
i rheMac8.chr4             I 19 C 0
s macNem1.NW_012012100v1     192977 6 +   1495729 aaTCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     336536 6 -    863181 aaTCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29371839 6 -  71996105 aaTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     148455 6 -    735854 aTTCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     117761 6 -   1829203 AATCTT
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     157842 6 -    383796 AAGTTG
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464 5 +  18854210 I
e cebCap1.NW_016107755v1     636775 24 -   1771730 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=5304458.000000
s hg38.chr6_GL000254v2_alt  1358330 899 +   4827813 GGCCCAGGTGAAATCATTGAAGCTATAAAACTTTGTGAG----------ACCTGTAGTTAGAGAGAAGGACAATTCAGTTTAGGGCTGCAGCAGAA-AATTCCTATATCATATTG----TGTTCTTCTTCATCATGAAGGTCCCCTGAAGGGACCTTCTCCCTTCAGCAGTGCATAGTGAGGCCATTTCCGTGCAAAAAGATAGAATCTCCTGGGATTCCTGATGTTTACACTTACTACTCACTCCTTCACTTTGTAGATGCCAACTTCACATTAGACATCTTTCAGTTAATTTCCTTACTCTGTCTAAGCAGAATATTTAAACTTCTTTCTGAAGCAGAAAACCAGGGACTGG-TTATGTGAGCTATCACCCCACTCTGTGGCTCTCTT-AAGCAATAAG-CATAAGAGATTGTGGGCCAACAGAATTTG-TAGCAAGGTAAACAT-AACCCTTCATTTCAGCCTATGTTTCAGCTTGTCTAGTGATGTTCCAGTCTTGCTCCAGTCTTAACATTTTAAAATTTA-TAATTTTACTTGAATATGA-TTTTATAAGAAGTCATATATATTCATTTCTGTTGAGTCTGTCAGTGAAAGCCTTCTCAAAACAACTGTGAAGTAAAGACAGG-TAAATAAATGCATG--------------------------------GTGCTCCCATGTATTAATGCTCACTGCATCTTACAAATGTGTCAGCCCCACTGCAACAGATGGTGCAtcaacaaatggtgctggaaacc--tggatatcaac-atgcaaaagaatgatgctggaa-aaaattcatgtccttccat------------taca-cccttttcaaaaatt-aagtcagaatgactcaaagaactaa-tcttaagaattgaacctg-taaaaccctc--aagaaaatactgaggaaaatctt--atggacattagaattggtagtggtttcttggctg-gtgaccaa
s panTro5.chr6             30231738 895 + 175400573 GGCCCAGGTGAAATCATTGAAGCTATAAAACTTTGTGAG----------ACCTGTAGTTAGAGAGAAGGACAATTCAGTTTAGGGCTGCAGCAGAA-AATTCCTATATCATATTG----TGTTCTTC---ATCATGAAGGTCCCCTGAAGGGACCTTCTCCCTTCAGCAGTGCATAGTGAGGCCATTTCCGTGTAAAAAGATAGAATCTCCTGGGATTCCTGATGTTTACACTTACTACTCACTCCTTCACTTTGTAGATGCCAACTTCACATTAGACATCTTTCAGTTAATTTCCTTACTCTGTCTAAGCAGAATATTTAAACTTCTTTCTGAAGCAGAAAACCAGAGACTGG-TTATGTGAGCTATCACCCCACTCTGTGGCTCTCTT-AAGCAATAAG-CATAAGAGATTGTGGGCCAACAAAATTTG-TAGCAAGGTAAACAT-AACCCTTCATTTCAGCCTATGTTTCAGCTTGTCTAGTGATGTTCCAGTCTTGCTCCAGTCTTAACATTTTAAAATTTA-TAATTTTACTTGAATATGA-TTTTATAAGAAGTCATATATATTCATTTCTGTTGAGTCTGTCAGTGAAAGCCTTCTCAAAACAACTGTGAAGTAAAGACAGG-TAAATAAATGCATG--------------------------------GTGCTCCCATGTATTAATGCTCACTGCATCTTACAAATGTGTCAGCCCCACTGCAACAGATGGTGCAtcaacaaatggtgctggaaacc--tggatatccac-atgcaaaagaatgatgctggac-aaaattcatgtccttccat------------taca-cccttttcaaaaatt-aagtcagaatgactcaaagaactaa-tcttaagaattgaacctg-taaaaccctc--aagaaaatactgaggaaaatct---atggacattagaattggtagtggtttcttggcgg-gtgaccaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30462283 895 + 173848474 GGCCCAGGTGAAATCATTGAAGCTATAAAACTTTGTGAG----------ACCTGTAGTTAGAGAGAAGGACAATTCAGTTTAGGGCTGCAGCAGAA-AATTCCTATATCATATTG----TGTTCTTC---ATCATGAAGGTCCCCTGAAGGGACCTTCTCCCTTCAGCAGTGCATAGTGAGGCCATTTCCGTGTAAAAAGATAGAATCTCCTGGGATTCCTGATGTTTACACTTACTACTCACTCCTTCACTTTGTAGATGCCAACTTCACATTAGACATCTTTCAGTTAATTTCCTTACTCTGTCTAAGCAGAATATTTAATCTTCTTTCTGAAGCAGAAAACCAGGGACTGG-TTATGTGAGCTATCACCCCACTCTGTGGCTCTCTT-AAGCAATAAG-CATAAGAGATTGTGGGCCAACAAAATTTG-TAGCAAGGTAAACAT-AACCCTTCATTTCAGCCTATGTTTCAGCTTGTCTAGTGATGTTCCAGTCTTGCTCCAGTCTTAACATTTTAAAATTTA-TAATTTTACTTGAATATGA-TTTTATAAGAAGTCATATATATTCATTTCTGTTGAGTCTGTCAGTGAAAGCCTTCTCAAAACAACTGTGAAGTAAAGACAGG-TAAATAAATGCATG--------------------------------GTGCTCCCATGTATTAATGCTCACTGCATCTTACAAATGTGTCAGCCCCACTGCAACAGATGGTGCAtcaacaaatggtgctggaaacc--tggatatccac-atgcaaaagaatgatgctggac-aaaattcatgtccttccat------------taca-cccttttcaaaaatt-aagtcagaatgactcaaagaactaa-tcttaagaattgaaactg-taaaaccctc--aagaaaatactgaggaaaatct---atggacattagaattggtagtggtttcttggcgg-gtgaccaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     168676 912 +   2037526 AGCCCAGGTGAAATCATTGAAGCTATAAAACTTTGTGAG----------ACCTGTAGTTAGAGAGAAGGACAATTCAGTTTA-GGCTGCAGCAGAA-AATTCCTATATCATATTG----TGTTCTTCTTCATCATGAAGGTCCCCTGAAGGGACCTTCTCCCTTCAGCAGTGCATAGTGAGGCCATTTCCATGTAAAAAGATAGAATCTCCTGGGATTCCTGATGTTT--AATTACTACTCACTCCTTCACTTTGTAGATGCCAACTTCACATTAGACATCTTTCAGTTAA-TTCCTTACTCTGTCT-AGCAGAATATTTAAACTTCTTTCTGAAGCAGAAAACCAGGGACTGGTTTATGTGAGCTATCACCCCACTCTGTGGCTCTATTAAAGCAATAAGCCATAAGAGATTGTGGGCCAACAGAATTTGTTAGCAAGGTAAACAT-AACCCTTCATTTCAGCCTATGTTTCAGCTTGTCTAGTGATGTTCCAGTCTTGCTCCAGTCTTAACATTTTAAAATTTATTAATTTTACTTGAATATGATTTTTATAAGAAGTCATATATATTCATTTCTGTTGAGTCTGTCAGTGAAAGCCTTCTCAAAACAACTGTGAAGTAAAGACAGGTTAAATAAATGCATG--------------------------------GTGCTCCCATGTATTAATGCTCACTGCATCTTACAGATGTGTCAGCCCCACTGCAACAGATGGTGCAtcaacaaatggtgctggaaaccatctgatatcaacaatgcaatagaat-atgctggacaaaaattcatgtccttccatg-----------tacaccccttttcaaaaattaaagtcagaatgactcaaagaactaattcttaagaattgaacctgttaaaaccctc--aagaaaatactgaggaaaatcttccatggacattagaattggtagttgtttcttggttgtgtgaccaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74838414 896 + 122973662 GGCCCAGGTGAAAGGTTTGAAGCTATAAAACTTTGTGAG----------ACCTGTAGCTAGAGAGAAGGACAATTCAGTTTAGGGCTGCAGCAGAAGAATTCC---ACCACATTGGAGCTTTCCTTCTTCTCCATGAAGGTCC-----AGGGACCTTCTCCATTCAGCAGTGCATAGTGAGGCCATTTCCATGTGAAAAGATAGAATCTCCTGGGATTCCTGATGTTTACACTTACTACTCACTCCTTCACTTTGTAGATGCCAACTTCACATTAGACATCTTTCAGTTAATTTCCTTACTCTGTCTAAGCAGAGAATTTAAACTTCTTTCTGAAGCAGAAAACCAGGGACTGA-TTATGTGAGCTATCACCCCACTCTGTGGCTCTCTT-AAGCAATAAG-CATAAGAGATTGTGGGCCAACAAAATTTG-TAGCAAAGTAAACATAAATCCTTCATTTCAGCCTATGTTTCAGCTTGTCTAGTGATGTTCCAGTCTTGCTCCAGTCTTAACATTTTAAAATTTA-TAATTTTACTTGAATATGA-TTTTATAAGAAGTCATATATATTCATTTCTGTTGAGTTTGTCAGTGAAAGCCTTCTCAAAACAACTGTGGAGGAAAGACAGG-TAAATAAATGCATG--------------------------------GTGTTCCCATGTATTAGTGCTCACTGCATCTTACAAATGTGTCAGCCCCACTGCAACA-ATGGTGCAtcaacaaatggtgctagaaacc--tggatatcaac-acgcaaaagaatcatgctggac-aaaactcatgtccttccat------------taca-cccttttcaaaaatt-aagtcagaatgactcaaagaactaa-ccttaagaattgaacctg-taaaaccctc--aagaaaatactgaggaaaatctt--atggacattagaattggtagtggtttcttggctc-gtgaccaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30681356 898 + 172585720 GGCCCAGGTAAAATCTTTGAAGACATAAAATTTTGTGAG----------ACCTGTATTTAGAGTGAAGGACAATTTAATTTAGGGCTGCAGCAGAA-AACCCCCACATCATATAG----CATTTTTCCTCATCATGAAGGTCCCCTGAAGGGACCTTCTCCCCTCAGCAGTGCATAGTGAGGCCATAGCTGTGTAAAAAGATAGAATCTCTT-TCATTCCTGATGTTTACACTTACTACTCACTCTTTGACTTTGTAGATGCCAACTTCACATTAGACATCTTTCGGTTAGTTTCCTTACTCTGTCTAAGCAGAGAATTTGAAATTGTTTCTGAAGCAGAAAACCAGGGACTTG-TTTTATGAGC-ATCACCCCACTCCGTGGCTCTCTT-ATGCAATAAG-CACAAGAGACTGTGGGCCAACAGAATTTG-TAGCAAGGTAAATATAAACCCTTCATTTCAGCCTATGTTTCAGTTTGTCTGGTGATGTTCCAGTCTTGCTCCAGTCTTAACATTTTAAAATTTA-TAATTTTACTTGCATTTGA-GTTTATAAGAAGTCATATATATTCATTTCTGTTGGGTTTGTCAGTGAAAGCCTTCTCAAAACAACTGTGGAGGAAAGACAGG-TAAATAAATGCATG--------------------------------GTGCTCCCATGTGTTAGTGCTCACTGCATCTTACAAATGTGTCACCCCCACCACGACATATGGTGCAtcaacaaatggtgctgggaacc--tggatatccac-atgcaaaagaatgatgctggag-aaaattcatgcccttccat------------taca-cccttttcaaaaata-aagtcagcatgactcaaagaactaa-ccttaagagttgaacctg-taaaaccctt--aagaaaatactgaggaaaatctt--atggacattagaattggtagtggtttcttggttg-gtgaccac
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     192983 898 +   1495729 GGCCCAGGTAAAATCTTTGAAGACATAAAACTTTGTGAG----------ACCTGTATTTAGAGCGAAGGACAATTTAATTTAGGGCTGCAGCAGAA-AACCCCCACATCATATAG----CATTTTTCCTCATCATGAAGGTCCCCTGAAGGGACCTTCTCCCCTCAGCAGTGCATAGTGAGGCCATAGCTGTGTAAAAAGATAGAATCTCTT-TCATTCCTGATGTTTACACTTACTATTCACTCTTTGACTTTGTAGATGCCAACTTCACATTAGACATCTTTCGGTTAGTTTCCTTACTCTGTCCAAGCAGAGAATTTGAAATTGTTTCTGAAGCAGAAAACCAGGGACTTG-TTATATGAGC-ATCACCCCACTCCGTGGCTCTCTT-ATGCAATAAG-CACAAGAGACTGTGGGCCAACAGAATTTG-TAGCAAGGTAAATATAAACCCTTCATTTCAGCCTATGTTTCAGTTTGTCTGGTGATGTTCCAGTCTTGCTCCAGTCTTAACATTTTAAAATTTA-TAATTTTACTTGCATTTGA-GTTTATAAGAAGTCATATATATTCATTTCTGTTGGGTTTGTCAGTGAAAGCCTTCTCAAAACAACTGTGGAGGAAAGACAGG-TAAATAAATGCATG--------------------------------GTGCTCCCATGTGTTAGTGCTCACTGCATCTTACAAATGTGTCACCCCCACTGCGCTATATGGTGCAtcaacaaatggtgctggaaacc--tggatatccac-atgcaaaagaatgatgctggag-aaaattcatgcccttccat------------taca-cccttttcaaaaata-aagtcagcatgactcaaagaactaa-ccttaagagttgaacctg-taaaaccctt--aagaaaatactgaggaaaatctt--atggacattagaattggtagtggtttcttggttg-gtgaccac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     336542 909 -    863181 GGCCCAGGTGAAATCTTTGAAGACATAAAACTTTGTAAGACCTGTATTTACCTGTATTTAGAGCGAAGGACAATTTAATTTAGGGCTGCAGCAGAA-AACCCCTACATCATATAG----CGTTTTTCCTTATCATGAAGGTCCCCTGAAGGGACCTTCTCCTCTCAGCAGTGCATAGTGAGGCCACTGCTGTGTAAAAAGGTAGAATCTCTT-TGATTCCTGATGTTTACACTTACTACTCACTCTTTGACTTTGTAGATGCCAACTTCACATTCGACATCTTTCGGTTAGTTTCCTTACTCTGTCTAAGCAGAGAATTTGAAATTGTTTCTGAAGCAGAAAACCAGGGACTGG-TTATATGAGCTAGCAAACTACTCTGTGGCTCCCTT-ATGCAAGAAG-CATAAGAGATCGTGGGCCAACAGAATTTG-TAGCAAGGTAAACATAAACCCTTCATTCCAGCCTATGTTTCAGTTTGTCTAGTGATGTTCCAGTCTTGCTCCAGTCTTAGCATTTTAAAATTTA-TAATTGTACTTGCATTTCA-GTTTATGAGAAGTCATATATATTCATTTCTGTTGGGTTTGTCAGTGAAAGCCTTCTCAAAACAACTGTGGAGGAAAGACAGG-TAAATAAATGCATG--------------------------------GTGCTCCCATGTGTTAGTGCTCACTGCATCTCACCAATGTGTCAGCCCCACTGCAACACATGGTGCAtcaacaaatggtgctggaaacc--tggatatccac-atgcaaaagaatgatgctggac-aaaattcatgcccttccat------------taca-cccttttcaaaaata-aagtcagaatgactcaaagaactaa-ccttaagagttgaacctg-taaaaccctt--aagaaaatactgaggaaaagctt--atggacattagaattggtagtggtttcttggttg-gtgaccac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29371845 929 -  71996105 GGCCCA-GTGAAATCTTTGAAGACATAAAACTTTGTGAG----------ACCCATATTCAGAGTGAAGGACAATTTAATTTAGGGCTGCAGCAGAA-AACTCCTACATCATATAG----TGTTTTTCCTCATCATGAAGGTCCCCTGAAGGGAACTTCTCCCCTCAGCAGTGCATAGTGAGGCCATTGCTGTGTAAAAAGATAGAATCTCTT-TGATTCCTGATGTTTACACTTACTACTCACTCTTTGACTTTGTAGATGCCAACTTCACATTAGACATCTTTCGGTTAGTTTCCTTACTCTGTCTAAGCAGAGAATTTGAAATTGTTTCTGAAGCAGAAAACCAGGGACTTG-TTATATGAGC-ATCACCCTACTCTGTGGCTCTCTT-ATGCAAGAAG-CACAAGAGATTGTGGGCCAACAGAATGTG-TAGCAAGGTAAACATAAACCCTCCATTTCAGCCTATGTTTCAGTTTGTCTAGTGATGTTCCAGTCTTGCTCCAGTCTTAACATTTTAAAATTCA-CAATTGTACTTGAATTTGA-TTTTATAAGAAGTCATATATATTCATTTCTGTTGGGTTTCTCAGTGAAAGCCTTCTCAAAACAACTGTGGAGGAAAGACAGG-TAAATAAATGCATGGTGCTCCCATGTGTTGGTGCTCCCATGTGTTAGTGCTCCCATGTGTTAGTGCTCGCTGCATCTTACAAATGTGTCAGCCCCACTGCAACATATGGTGCAtcaacaaatggtgctgggaacc--tggatatccac-atgcaaaagaatgatgctggag-aaaattcatgcccttccat------------taca-cccttttcaaaaata-aaatcagaatgactcaaagaattaa-gcttaagagttgaacctg-taaaaccctt--aagaaaatactgaggaaaagctt--atggacattagaattggtagtggtttcttggttg-gtgaccac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     148461 899 -    735854 GGCCCAGGTGAAATCTTTGAAGACATAAAACTTTGTGAG----------ACCTGTATTTAGAGCGAAGGACAATTTAATTTAGGGTTGCAGCAGAA-AACCCCTACATCATATAG----GGTTTTTCCTCATCATGAAGGTCCCCTGAAGGGACCCTCTCCCTTCAGCAGTGCACAGTGAGGTCATTTCTGTGTAGAAAGATAGAATCTCCT-TGGTTCCTGATGTTTACATTTACTACTCACTCTTTGACTTTGTAGATGCCAACTTCACATTAGACATCTTTCGGTTAGTTTCCTTACTCTATCTAAGCAGAGAATTTGAAATTGTTTCTGAAGCAGAAAACCAGGGACTGG-TTATATGAGCTATCACCCTACTCTATGGCTCTCTT-ATGCAAGAAG-CATAAGAGATCCTGGGCCAACAAAATTTG-TAGCAAGGTAAACATAAACCCTTCATTTCAGCCTATGTTTCAGTTTGTCTAGTGGTGTTCCAGTCTTGCTCCAGTCTTAACATTTTAAAATTTA-TAATTGTACTTGCATTTGA-GTTTATAAGAAGTCATATATATTCATTTCTGTTGGGTTTCTCAGTGAAAGCCTTCTCAAAACAACTGTGGAGGAAAGACAGG-TAAATAAATGCATG--------------------------------GTGCTCCCATGTGTTAGTGCTCACTGCATCTTACAAATGTGTCAGCCCCACTGCAACATATGGTGCAtctacaaatggtgctgggaacc--tggatatccac-atgcaaaagaatgatgctggac-aaaattcatgcccttccat------------taca-cccttttcaaaaata-aagtcagaatgactcaaagaacgaa-ccttaagagttgaacctg-taaaaccctt--aagaaaatactgaggaaaatctt--atggacattagaattggtagtggtttcttggttg-gtgaccac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     117767 888 -   1829203 GGCCCAGGTGAAATCATTGAAGATATAAAACTTTGTGAG----------ATCTGTAGTTAGAGCGAAGGACAATTTAATTTAGGGCTGCAGCAGAA-AACCCCCACATCATATAG----GGTTTTTCTTCATCATGAAGGTCCCCTGAAGGGACCTTCTCCCTTCAGCAGTGCATAGTGAGGTCATTTCTGTGTAAAAAGACAGAATCTCCT-TGGTTCCTGATGTTTA-----------CACTCTTTGACTTTGTGGATGCCAACTTCACATTAGACATCTTTTGGTTATTTTCCTTACTCTGTCTAAGCAGAGAATTTAAACTTGTTTCTGAAGCAGAAAACCACGGACTGG-TTATATGAGCTATCACCCTACTCTGTGGCTCTCTT-ATGCAATAAA-CATAAGAGATTGTGGGCCAACAGAATGTG-TAGCAAGGTAAACATAAACCCTCCATTTCAGTCTATGTTTCAGCTTGTCTAGTGATGTTCCAGTCTTGCTCCAGTCTTAACATTTTAAAATTTA-TAATTTTACTTGAATTTGA-TTTTATAAGAAGTGATATATATTCATTTCTGTTGGGTTTGTCAGTGAAAGCCTTCTCAAAACAACTGTGGAGTAAAGACAAG-TAAAAAAATGCATG--------------------------------GTGCTCCCATGTATTAGTGCTCACTGCATCTTACAAATGTGTCACCCCCACTGTGACAGATGGTGCAtcaacaaatggtgctggaaacc--tggatatccac-atgcaaaagaatgatactggac-aaaattcatgcccttccat------------taca-actttttcaaaaata-aagtcagaatgactcaaagaactaa-tcttaagagttgaacctg-taaaattctt--aagaaaatactgaggaaaagctt--atggacattagaatcggtagtggtttcttggttg-gtgaccat
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     636799 889 -   1771730 GGCCCAGGTGAAACCATTGAAGCTATACAACTTTGTGAG----------ACCTTCAGTTAGAAAGA---ACAGTGCAATTTAGAACTGCAGCAGAA-AACCTCTACGTCATATAG----GGATTTTCTTCATCATGAAGTTCCCCTGAAGGGACCTGCTCCCTTCACCAATGCAGAGCATGG-CATTTCTGTGTAAAATGATACAATCTCCTTGGATTCCTGATGTTGACACTTAGTACTCACTGTCTGACTTTGTAGATGCCAACTTCACATTCAACATTTTTCAGTTAATTTTCTTACTCTGTCTAAGCAGAGAATTTGAAATTGTCTCTGAAGCAGAAAACCTGGGACTGG-TTATGTGAGCTCTCACCCCATCCTGTGGCTCTCTT-ATGCAATAAG-CAT-AGAGATGGTGGGCCAACAGAATGTG-TAGCAAGGTAAACATAAACCCTTCATTTCAGCCTATGTGT-GGCTTTTCTAGTGATGTTCTAGTCTTGCTCCAGTCTTAGCATTTTAATATTGA-CAATTTTACTTGAACTTTA-TTTTATAGGAAGTCATATGCATTTATTTCTGCTGCGT-TGTCAGTGAAAACCTTCTCAAAACAACTCT-----AAAGACATG-TAAATAAATGCATG--------------------------------GTGCTCCCATGTATTAGTGCTCAGTGCATCTTACAAATGGATCAGCCCCACTCCAACACATGGTGttttaacaaatggtgctggaaacc--tagatagccac-atgcaaaagaatgatactagg--aaaattcttgcccttctat------------taca-ccctatacaaaaatt-acgtcagaatggcttaaagaactaa-ccttaacagttaaacctg-taaaactcttaaaagaaaatgctgaggaaaatctt--agggacattagaattggtagtggtttcttggcag-gtaacaaa
i cebCap1.NW_016107755v1   I 24 C 0
s aotNan1.NW_018496904v1     157848 910 -    383796 GGCCCAGGTGAAACCATTGAAGCTATAAAACTTGGTGAG----------ACCTTCAGTTAGAAAGAAGGACATTGCAATTTAGGGCTGCAGCAGAA-AACCTCTATATCATACAG----GGATTTTCTTCATCATGAAGGTTACCTGAAGGGACTTGCTCCCTTCAGCAATGCAGAGTGAGGCCATTTCTCTGTCAAAAGATACAATCTCCTTGGATTCCTGATGTTGACACTTACTACTCTCTGTCCGACTTTGTAGATGCCAACTTCACATTCAACATCTTTCAGTTAATTTTCTCACTCTGCCTAAGCAGAGAATTTGAAATTGTTTCTGAAGCAGAAAACCAGGGACTGG-TTATGTGAGCTCTCACCCCACCCTATGTCTATCTT-ATGCAGTAAG-CTT-AGAGATGGCAGGCCAACAGAATGTG-TAGCAAGGTAAACATAAACCCTCCAATTCAGTCTATGTTT-GGCTTTTCTAGTGATGTTCTAGTCTTGCTCCAGTCTTAGCattttaatattta-taattttacttgaatttta-ttttaTAGGAAGTCATATGCATGTATTTCTGCTGGGT-TGTCAGTGAAAACCTTCTCAAAACAACTCCAGAGAAAAGACAGG-TAAATAAATGCATG--------------------------------GTGCTCCCATGTATTACTGCTCAGTGCATCTAACAATTGGATCAGCCCCACTGCAACACATGGTGttttaacaaatggtgctggaaacc--tggacatccac-atgcaaaagaatgataataga--aaaaatcttgcccttctattacacccagtactaca-ccctgtacaaaaatt-ttgtcagaatggcttaaagaactaa-ccttaagagttaaacctg-taaaactcttaaaagaaaatgctgaggaaaatctt--acagacattagaattgctagtggtttcttagcag-gtaacaaa
i aotNan1.NW_018496904v1   C 0 I 7
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464   5 +  18854210 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=45892.000000
s hg38.chr6_GL000254v2_alt  1359229 9 +   4827813 tagtacaag
s panTro5.chr6             30232633 9 + 175400573 tagtacaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30463178 9 + 173848474 tagtacaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     169588 9 +   2037526 tagtacaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74839310 9 + 122973662 tagtacaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30682254 9 + 172585720 tagtacaag
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     193881 9 +   1495729 tagtacaag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     337451 9 -    863181 tagtacaag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29372774 9 -  71996105 tagtacaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     149360 9 -    735854 tagtacaag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     118655 9 -   1829203 tagtacaag
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     637688 7 -   1771730 -agcataa-
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464 5 +  18854210 I
e aotNan1.NW_018496904v1     158758 7 -    383796 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=1649383.000000
s hg38.chr6_GL000254v2_alt  1359238 265 +   4827813 taatataagaa-aaatgacaaattagaatgcatcaaaatttaaaaacttttttgcatcaaaggacactattaagagaatcaaaa--gaaaatgcacagaccaggaggaaatatttgccaatcacatatctgataaagaattaatatccagaatatgtaaagaactacaattcaacaa-tagcaaaacaatctcattcaaaaataagtaaaagacatgaat-agacaattctccaaagaagatatacaataa-ggacataaaaataaggaat
s panTro5.chr6             30232642 265 + 175400573 taatataagaa-aaatgacaaattagaatgcatcaaaatttaaaaacttttttgcatcaaaggacactattaagagagtcaaaa--gaaaatgcacagactaggaggaaatatttgccaatcacatatctgataaagaattaatatccagaatatgtaaagaactacaattcaacaa-tagcaaaacaatctcattcaaaaatgagtaaaagacatgaat-agacaattctccaaagaagatatacaataa-ggacataaaaataaggaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30463187 265 + 173848474 taatataagaa-aaatgacaaattagaatgcatcaaaatttaaaaacttttttgcatcaaaggacactattaagagagtcaaaa--gaaaatgcacagactaggaggaaatatttgccaatcacatatctgataaagaattaatatccagaatatgtaaagaactacaattcaacaa-tagcaaaacaatctcattcaaaaatgagtaaaagacatgaat-agacaattctccaaagaagatatacaataa-ggacataaaaataaggaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     169597 271 +   2037526 taatataagaataaatgacaaattagaatgcattcaaaattaaaaacttttttgcattcaaagacactattaagagagtcaaaaagaaaaatgcacagactaggaggaaatatttgccaatcacatatctgataaagaattaatatccagaatatgtaaagaactacaattcaaccattagcaaaacaatctcatttcaaaatgagtaaaagacatgaatcagacaattctccaaagaagatatacaataagggacataaaaataaggaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74839319 265 + 122973662 taatataagaa-aaatgacaaattagaatgcatcaaaatttaaaaacttttttgcatcaaaggacactattaagagagtcaaaa--gaaaatgcacagactaggaggaaatatttaccaatcacatatctgataaagtattaatatccagaatatgtaaagaactacagttcaacaa-tagcaaaacaatctcattcaaaaatgggtaaaaaatatgaac-agacaattctctaaagaagatatacaataa-ggacataaaaataaggaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30682263 265 + 172585720 taacataagaa-aaatgacaaatgagactgcatcaaaatttaaaaacttttttgcatcaaaggacactgttaagagagtcaaaa--gaaaatgcacagactaggaggaaatatttgccaatcacatatctgataaagaattaatatccagaacatgtaaagaactacaattcaacaa-tagcaaaacaatctcattcaaaaatgagtaaaagacatgaat-agacaattctccaaagaacatatacaataa-gaacataaaaataaggaat
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     193890 265 +   1495729 taacataagaa-aaattacaaatgagactgcatcaaaatttaaaaacttttttgcatcaaaggacactgttaagagagtcaaaa--gaaaatgcacagactaggaggaaatatttgccaatcacatatctgataaagaattaatatccagaacatgtaaagaactacaattcaacaa-tagcaaaacaatctcattcaaaaatgagtaaaagacatgaat-agacaattctccaaagaacatatacaataa-ggacataaaaataaggaat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     337460 265 -    863181 taacataagaa-aactgacaaatgagactgcatcaaaattttaaaacttttttgcatcaaaggacactgttaagagagtcaaaa--gaaaatgcacagactgggaggaaatatttgccagtcacatatctgataaagaattaatatctagaacacgtaaagaactacaattcaacaa-tagcaaaacaatcccattcaaaaatgagtaaaagacatgaat-agacaattctccaaagaacatatacaataa-ggacataaaaataatgaat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29372783 265 -  71996105 taacataagaa-aaatgacaaatgagactgcatcaaaatttaaaaacttttttgcatcaaaggacactgttaagagagtcaaaa--gaaaatgcacagactaggaggaaatatttgtcaatcacatatctgataaagaatgaatatccagaacacgtaaagaactacaattcaacaa-tagcaaaacaatctcattcaaaaatgactaaaaggcatgaat-agacaattctccaaagaacctatacaataa-ggacataaaaaTAAGGAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     149369 265 -    735854 taacataagaa-aaatgacaaatgagactgcatcaaaatttaaaaacttttttgcatcaaaggacactcttaagagagtcaaaa--gaagatgcacagactaggaggaaatatttgccaatcacataactgataaagaattaatatccagaacatgtaaagaactacaattcaacaa-tagcaaaacaatctcattcaaaaatgagtaaaagacatgaat-agacaattctccaaagaacatatacaataa-ggacataaaaataaggaat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     118664 265 -   1829203 taatataagaa-aaatgacaaattagattgcatcaaagtttaaaaacttttttgcatcaaaggacactgttaagagagtcaaaa--gaaaatgcacagactgggaggaaatatttgccaatcacatatctgataaagaattaatatccagaacatgtaaagaactacaattcaacaa-tagcaaaacaatctcattcaaaaatgagtaaaagacatgaat-agacaattctccaaagaacatatacaataa-ggacataaaaataaggaat
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     637695 258 -   1771730 tgataaaagaa-aaatggcaaattagactctatcaaaatgtaaaaacttttttacatcaaacgacactattaacagagtgaaaa--gaaaatgcacagaataggaggaaatatttgcca-------atctgataaagaattaatatccagactacataaagaactacaacttaacaa-tagcaaagcaatcacattcaaaaatgggtaaaatgcatgaat-agacaattctccggagaagatacacaataa-gaacataaaaataaggaat
i cebCap1.NW_016107755v1   C 0 N 0
s aotNan1.NW_018496904v1     158765 258 -    383796 taataaaagaa-aaatggcaagttaggctctatcataaggtaaaaacttttttacatcaaataacactattaagagagtgaaaa--gacaatgcac-----aggaggaaataattgccgatcacgtatctgatacagaattaatatccagactacatgaagaactacaacttaacag-tagcaaagcaatcacattcaaaaacgggtaaga--catggat-agacaattctccagagaagatacacaataa-ggacataaaaataaggaat
i aotNan1.NW_018496904v1   I 7 T 54563
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464   5 +  18854210 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=90175.000000
s hg38.chr6_GL000254v2_alt  1359503 22 +   4827813 gctggtc---aggcat-ggtggctca
s panTro5.chr6             30232907 22 + 175400573 gctggtc---aggcat-ggtggctca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30463452 22 + 173848474 gctggtc---aggcat-ggtggctca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     169868 26 +   2037526 gctggttcaggggcataggtggctca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74839584 22 + 122973662 gctggtc---aggcat-ggtggctca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30682528 22 + 172585720 gctggtc---aggcgt-ggcgactca
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     194155 22 +   1495729 gctggtc---aGGCGT-GGCGACTCA
i macNem1.NW_012012100v1   C 0 I 3747
s cerAty1.NW_012002535v1     337725 22 -    863181 gctgatc---aggcat-ggcgactca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29373048 22 -  71996105 GCTggtc---aggcgt-agcgactca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     149634 22 -    735854 gctggtc---aggcgt-ggcaactca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     118929 22 -   1829203 gctggtc---aggcgt-ggtgactca
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464  5 +  18854210 I
e aotNan1.NW_018496904v1     159023 54563 -    383796 T
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=131498.000000
s hg38.chr6_GL000254v2_alt  1359525 35 +   4827813 tgcctgtaatcccagtactttgggaggccgaggtg
s panTro5.chr6             30232929 35 + 175400573 tgcctgtaatcccagtactttgggaggccgaggtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30463474 35 + 173848474 tgcctgtaatcccagtactttgggaggccgaggtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     169894 35 +   2037526 tgcctgtaatcccagtactttgggaggccgaggtg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74839606 35 + 122973662 tgcctataatcccagtactttgggaggccgaggag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30682550 35 + 172585720 cgcctgtaatcccagcactttggggggccgaggca
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     337747 35 -    863181 cgcctgtaatcccagcactttggggggccgaggca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29373070 35 -  71996105 cgcctgtaatcccagcactttggggggccgaggca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     149656 35 -    735854 cgcctgtaatcccagcactttggggggccgaggca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     118951 35 -   1829203 cacctgtaatcccagcactttgggaggccaaggca
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464  5 +  18854210 I
e aotNan1.NW_018496904v1     159023 54563 -    383796 T
e calJac3.chr4             30309321 5120 + 171630274 I
e macNem1.NW_012012100v1     194177 3747 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=857686.000000
s hg38.chr6_GL000254v2_alt  1359560 202 +   4827813 ggcggatcacgaggtcaagagatc-aagaccatcccggccaacatggtgaaaccccgtctgtaccaaaaaaa---tacaaatattagttgggcatgg-tggca-ggtacctgtagtccca-gctactcaggaggctga-ggtaggagaatca-cttgaacctgggaagtggaggttacagcgagcc-gagattgtgccactgca-ctccagcc
s panTro5.chr6             30232964 202 + 175400573 ggcggatcacgaggtcaagagatc-aagaccatcctggccaacatggtgaaaccccgtctgtaccaaaaaaa---tacaaatattagttgggcatgg-tggca-ggtacctgtagtccca-gctactcaggaggctga-ggtaggagaatca-cttgaacctgggaagtggaggttacagcgagcc-gagattgtgccactgca-ctccagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30463509 202 + 173848474 ggcggatcacgaggtcaagagatc-aagaccatcctggccaacatggtgaaaccccgtctgtaccaaaaaaa---tacaaatattagttgggcatgg-tggca-ggtacctgtagtccca-gctactcaggaggctga-ggtaggagaatca-cttgaacctgggaagtggaggttacagcgagcc-gagattgtgccactgca-ctccagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     169929 208 +   2037526 ggcggatcacga-gtcaagagatcaaagaccatcctggcccaaatggtgaaaccccgtctgtaccaaaaaaa---tacaaatatta-ttgggcatggttggcacggtacctgtagtcccatgctactcaggaggctgatggtaggagaatcattttgaacccggaaagtggaggttacagcgagccggagattgtgccactgcagctccagcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74839641 202 + 122973662 ggcggatcacgaggtcaagagatc-aagaccatcctggcgaacatggtgaaaccccgtctctactaaaaaaa---tacaaatattagttgggcatgg-tggca-tgtacctgtagtctca-gctactcgggaggctga-ggtaggagaatca-cttgaacctgggaggcgggggttacagcgagcc-gagattgtgccactgca-ctccagcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30682585 204 + 172585720 ggcagatcacaaggtcaagagatc-aagaccatcctggccaacatggtgaaaccccgtctccactaaaaaaaaa-tacaaaaatcagctgggcatgg-tggca-cgcacctatagtccca-gctactcaggaggctga-ggtaggagaatca-cttgtacctgggaggcagacgttgcagcaagcc-gagattgcgccactgca-ctccagcc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     197924 202 +   1495729 ggcggaccacaagatcaagagatc-aagaccatcctggccaacatggtg-aaccgcgtctctactaaaaaaaaagtacaaaaatcagctgg--atgg-tggta-tgcacctatagtccca-gctactcaggaggctga-ggtaggagaatca-cttgtacctgggaggcggaggttgcagcaacgc-gagattgcgccactgca-ctccagtc
i macNem1.NW_012012100v1   I 3747 I 6
s cerAty1.NW_012002535v1     337782 203 -    863181 ggcggatcacaaggtcaagagatc-aagaccatcctggccaacatggtgaaaccccgtctctactaaaaaaaa--tacaaaaatcagctgggcatgg-tggta-ctcacctgtagtccca-gctactcaggaggctga-ggtaggagaatca-cttgtacctgggaggcagaagttgcagcaagcc-gagattgtgccactgca-ctccagcc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29373105 203 -  71996105 ggtggatcacaaggtcaagagatc-aagaccatcctggccaacatggtgaaaccccgtctctactaaaaaaaa--tacaaaaatcagctgggcatgg-tggca-tgcacctatagtccca-gctactcaggaggctga-ggtaggagaatca-cttgtacctgggaggtggaggttgcagcaagcc-gagattgcgccactgca-ctccagcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     149691 203 -    735854 ggtggatggcaaggtcaagagatc-aagaccatcctggccaacatggtgaaaccccgtctctatttaaaaaaa--tacaaaaatcagctgggcatgg-tggca-cgcacctatagtccca-gctactcaggaggctga-ggtaggagaatca-cttgtacctgggaggcggacgttgcagcaagcc-gagattgcgccactgca-ctccagcc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     118986 197 -   1829203 ggcagatcacaaggtcaagagatc-aagaccatcctggccaacatggtgaaatcccgtttctactaaaaaaaa--tacaaaaattagctgg-------tggca-tgcagctgtagtccca-gctactcaggaggctga-ggtaggagaatca-cttgtacctgggaggcggaggttgcagcaagcc-gagattgcgccactgca-ctccagcc
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464   5 +  18854210 I
e aotNan1.NW_018496904v1     159023 54563 -    383796 T
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=24891.000000
s hg38.chr6_GL000254v2_alt  1359762 8 +   4827813 tggcaaca
s panTro5.chr6             30233166 8 + 175400573 tggcaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30463711 8 + 173848474 tggcaaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     170137 8 +   2037526 tggcaaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74839843 8 + 122973662 tggcaaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30682789 8 + 172585720 aggcgaca
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002535v1     337985 8 -    863181 aggtgaca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29373308 8 -  71996105 aggcgaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     149894 8 -    735854 aggcgaca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     119183 8 -   1829203 aggcgaca
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464 5 +  18854210 I
e aotNan1.NW_018496904v1     159023 54563 -    383796 T
e calJac3.chr4             30309321 5120 + 171630274 I
e macNem1.NW_012012100v1     198126 6 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=77806.000000
s hg38.chr6_GL000254v2_alt  1359770 27 +   4827813 gagcaagactctgtttca----caa-------aaaaaa
s panTro5.chr6             30233174 27 + 175400573 gagcaagactctgtcaca----cac-------acaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30463719 24 + 173848474 gagcaagactctgtcaca--------------aaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     170145 31 +   2037526 gagcaagactctgtcacacacacac-------acacaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74839851 30 + 122973662 gagcaagactctgtctca-aaaaaa-------aaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30682797 23 + 172585720 ----gagactccatctca----aaa-------aaaaaa
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     198132 26 +   1495729 gagcaagact-catctca----aaa-------aaaaaa
i macNem1.NW_012012100v1   I 6 C 0
s cerAty1.NW_012002535v1     337993 27 -    863181 gagcaagactccatctca----aaa-------aaaaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29373316 34 -  71996105 gagcaagactccatctca----aaaaaaaaagaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     149902 27 -    735854 gagcaagactccatctca----aaa-------aaaaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     119191 27 -   1829203 gagcaagactccatcaca----aaa-------aaaaaa
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464  5 +  18854210 I
e aotNan1.NW_018496904v1     159023 54563 -    383796 T
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=1463706.000000
s hg38.chr6_GL000254v2_alt  1359797 299 +   4827813 aaaaaa------------------aaggaatgccaataaggacataaaa---atatggtaaacttcactagg---ccaagtgttg-gtgaagata-tggagaaa-ctggaacacttgtac-actgct-ggtgagagt---atacagtggtgcagccaccat-ggaaaacag--aatagtgattcc-tcaagaaagtaaaaatagaattactatat-gagcca---acaat-tccacttttgggcatacc--caaaagaactgaaagcaggaactca-cccagatatgtgtacactcaggcccatagcagcactatacccaatatccaaaaggtggaagcaacc
s panTro5.chr6             30233201 295 + 175400573 aaaa----------------------ggaatgccaataaggacataaaa---atatggtgaacttcactaga---ccaagtgttg-gtgaagata-tggagaaa-ctggaacacttgtac-actgct-ggtgagagt---atacagtggtgcagccaccat-ggaaaacag--aatagtgattcc-tcaagaaagtaaaaatagaattactatat-gagcca---acaat-tccacttttgggcatacc--caaaagaactgaaagcaggaactca-cccagatatgtgtgcactcaggcccatagcagcactatacccaatatccaaaaggtggaagcaacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30463743 295 + 173848474 aaaa----------------------ggaatgccaataaggacataaaa---atatggtgaacttcactagg---ccaagtgttg-gtgaagata-tggagaaa-ctggaacacttgtac-actgct-ggtgagagt---atacagtggtgcagccaccat-ggaaaacag--aatagtgattcc-tcaagaaagtaaaaatagaattactatat-gagcca---acaat-tccacttttgggcatacc--caaaagaactgaaagcaggaactca-cccagatatgtgtgcactcaggcccatagcagcactatacccaatatccaaaaggtggaagcaacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     170176 320 +   2037526 aaaagt------------------aaggaatgccaataagcacataaaaagtatatggtaaacttcactaggtaccaaagtgttgtgtgaagatattggagaaacctggaacacttgtacaattgctgggtgagagttagatacagtggtgcagccaccatgggaaaacagaaaatagtgattccttcaagaaagt-aaaatagaattactgtatggagccatacacaatatccacttttgggcatacc--caaaagaactgaaagcaggaactca-cccagtattgta-gcactcaggcccatagcagcactatacccaatatccaaaaggtggaagcaacc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74839881 299 + 122973662 aaaaaa------------------aaggaatgccaataaggacataaaa---atatggtaaacttcactagg---ccaagtgttg-gtgaagata-tggagaaa-ttggaacacttgtac-actgct-ggtgaaaat---atacagtggtgcagccaccat-ggaaaacag--tatagtgattcc-tcaagaaagtaaaaatagaattactatat-gagcca---acaat-tccacttttgggcatacc--caaaagaactgaaagcaggaactca-cccagatatgtgtacactcaggcccatagcagcactatacccaatatccaaaaggtcgaagcaact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30682820 308 + 172585720 aaaagaaaagaaa-----------aaggaatgccgataaggacataaaa---atatggtaaacttcactagg---ccaaatgttg-gtgaagata-tggagaaa-ctggaacacttgtac-actgct-ggtgagagt---gaacagtggtgcagccaccgt-ggaaaacag--tatagtggttcc-ttaagaaagtaaaaatagaattactatat-gagtca---acaat-tccacttttgggcatatcgtcaaaagaattgaaagcaggaactca-cacagatatttgcacactcaggcccatagcagcactattcccaatacccaaaaggtggaagcagcc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     198158 305 +   1495729 aaagaaaaagaaag----------aaGGAAAGCTGATAAGGACAT-AAA---ATATGGCAAACTTCACTAGG---Ccaaatgttg-gtgaagata-tggagaaa-ctggaacacttttac-actgct-ggtgagagt---gtaccg-ggtacagccaccat-ggaaaacag--tatagtggttcc-ttaagaaagtaaagacagaattactatat-gagtc----acaat-tccacttttgggcatatcgtcaaaagaactgaaagcaggacctcaccacagata--tgcacactcaggcccacagcagcactattcccaatacccaaaaggtggaagcaacc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     338020 312 -    863181 aaagaaaagaaaag-------aaaagggaatgctgataaggacataaaa---atatggtaaacttcactagg---cgaagtgttg-gtgaagata-tggagaaa-tgggaacacttgtac-actgct-ggtgagagt---gtacagtagtgcagccaccat-ggaaaacag--tatagtggttcc-ttaagaaagtgaaaatagaattactatgt-gagtca---acagt-tccacttttgggcatatcgtcaaaagaactgaaagcaggaactca-cacagatatttgcacactcaggctcatagcagcactattcccaatacccaaaaggtggaagcaact
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29373350 319 -  71996105 agaaaaaaaaaaaaagaaaagaaaaaGGAATGCTGATAAGGACATAAAA---ATATGGTAAACTTCACTAGG---Ccaaatgttg-gtgaagata-tggagaaa-cgggaacacttgcac-actgct-cgtgagagt---gaacagtggtgcagccaccat-ggaaaacag--tatagtggttcc-ttaagacagtaaagatagaattactatat-gagtca---acagt-tccacttttgggcatatcgtcaaaagaattgaaagcaggacctca-cacagatatttgcacactcaggcccatagcagcactattcccaatacccaaaaggtggaagcaacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     149929 319 -    735854 aaaaaaaaaaaaaaagaaaagaaaaaggaatgccgataaggacataaaa---atatggtaaacttcactagg---ccaaatgttg-gtgaagata-tggagaaa-ctggaacacttgcac-actgct-ggtgagagt---gtacagtggtgcagccaccat-ggaaaacag--tacagtggttcc-ttaagaaagtaaagatagaattactatat-gagtca---acagt-tccacttttgggcatatagtcaaaagaactgaaagcaggacctca-cacagatatttgtacactcaggcccatagcagcactattcccaatacccaaaaggtggaagcaacc
i manLeu1.NW_012107142v1   C 0 I 14530
s colAng1.NW_012115577v1     119218 316 -   1829203 aagaaaagaaaaga---aaagaaaaaggaatgccaataaggacataaaa---atatggtaaacttcactagg---ccaagtgttg-gtgaagata-tggagaaa-tgggaacacttgtac-actgct-ggtgagagt---gtacactggtgcagccaccat-ggaaaacag--tatactggttcc-ttaagaaagtaaaaatagaattactatat-gagcca---acaat-tccacttttgggcatatagtcaaaagaactgaaagcaggaactca-cacaggtatctgcgcactcaggaccatagcagcactattcccaatacccaaaaggtggaagcaacc
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     104460 300 -    383796 aaaaat------------------aaggaatgccaataaggacataaaa---gtatgctaagcttcactagg---ccaagtgttg-gtgaagata-tggagaca-ttggaacacttgtgc-actgct-ggtgagagt---gaacagtggtgcagccaccat-ggaaag-ag--tagagtggttcc-tcaagaaagtcaaaatagaatcactctat-gagccg---acaac-tccacttgtgggcatatacccaaaagaactgaaagcgagaactca-cacagacatttgtaccctcaggcccacagcagcactattcccaatagccaaaaggtggatgcaacc
i aotNan1.NW_018496904v1   T 54563 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464   5 +  18854210 I
e calJac3.chr4             30309321 5120 + 171630274 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=600371.000000
s hg38.chr6_GL000254v2_alt  1360096 155 +   4827813 gagtgtccatcagaggatga-ctgg-ataaacaacccacggtgcacat-aagcatggaatattattcagccttaaaagtgaatgaaattctaattggatgagccttgaaaacactataa-gtgaaataagccagaaat-aaaaac-aaatatgatatttta
s panTro5.chr6             30233496 155 + 175400573 gagtgtccatcagaggatga-ctgg-ataaacaacccacggtgcacat-aagcatggaatattattcagccttaaaagtgaatgaaattctaattggatgagccttgaaaacactataa-gtgaaataagccagaaat-aaaaac-aaatatgatatttta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30464038 155 + 173848474 gagtgtccatcagaggatga-ctgg-ataaacaacccacggtgcacat-aagcatggaatattattcagccttaaaagtgaatgaaattctaattggatgagccttgaaaacactataa-gtgaaataagccagaaat-aaaaac-aaatatgatatttta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     170496 156 +   2037526 gagtgtccatcagaggatgagctggaataaacaacccacggtgcacataaagcatggaatattattcagccttaaaagtgaatgaaattctaatt-gatgagctttg-aaacactataa-gtgaaataagcca-aaat-aagaacaaaatatgatatttta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74840180 155 + 122973662 gagtgtccaccagaggatga-ctgg-ataaacaacccacggtgcacat-aagcatggaatattattcagccttaaaagtgaatgaaattctaattggatgagccttgaaaacactataa-gtgaaataagccagaaat-aaaaac-aaatatgatatttta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30683128 154 + 172585720 gagtgtccatt-gaggatga-ctgg-ataaacagcccacggtgcacat-acacatggactattattcagccttaaaagtgaatgaaattctgattggatgagccttgaaaacactgtaa-gtgaaataagccagaaat-aaaaac-aaatatgatatttta
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     198463 147 +   1495729 gagtgtccatt-gaggatga-ctgg-ataaacagcccacattgcacat-acacatggaatatta-tcagcctt-aaagtgaatgaaattt--aatggatgagccttgaaaacactgtaaggtgaaataacgca-aaat-gaaaac-aaatatga---ttta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     338332 154 -    863181 gagtgtccatt-gaggatga-cggg-ataaacagcccacggtgcacac-acacatggaatattattcagcctcaaaagtgaatgaaattctaattggatgagccttgaaaacactgtaa-gtgaaataagccagaaat-gaaaac-aaatatgatatttta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29373669 154 -  71996105 gagtgtccatt-gaggatga-ctgg-ataagcagcccacggtgcacac-acacatggaatattattcagccttaaaagtgaacgaaattccaattggatgagccttgaaaacactgtaa-gtgaaataagccagaaat-aaaaac-aaatatgatatttta
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     119534 137 -   1829203 gagtgtccatt-gaggatga-ctgg-ataaacagcccatggtgcacac-acacatggaatattattcagccttaaaagtgaatgaaattctaattggatg-----------------aa-gtgaaataagccagaaat-aaaaac-aaatatgatattttg
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     104760 148 -    383796 gagtgtccatcagaggatga----------acaacccctggtgcacat-gcgcatgggatattattcggccttaaaagttaataaaattctgaatggatgaaccttgaatacattataa-gtgaaataagctagaaataaaaaac-aaatgtgatatttta
i aotNan1.NW_018496904v1   C 0 I 3628
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464   5 +  18854210 I
e calJac3.chr4             30309321 5120 + 171630274 I
e manLeu1.NW_012107142v1     150248 14530 -    735854 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=709588.000000
s hg38.chr6_GL000254v2_alt  1360251 207 +   4827813 c---ttatataaagtagctagaataagcaaattcata-gaaaca-gaaaatagaatagagattaccaggggctgggg---gtagggagaatgggcagttatggtttaatgggtacagtttctg-ttt-gggatgatgaaaatgttctggaaatggatattggcggtggttacacaacactgtaaatgtgcttactgccaccaaattgtacactgaaa
s panTro5.chr6             30233651 207 + 175400573 c---ttatataaagtagctagaataagcaaattcata-gaaaca-gaaaatagaatagagattaccaggggctgggg---gtagggagaatgggcagttatggtttaatgggtacagtttctg-ttt-gggatgatgaaaatgttctggaaatggatattggcggtggttacacaacactgtaaatgtgcttaatgccaccaaattgtacactgaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30464193 207 + 173848474 c---ttatataaagtagctagaataagcaaattcata-gaaaca-gaaaatagaatagagattaccaggggctgggg---gtagggagaatgggcagttatggtttaatgggtacagtttctg-ttt-gggatgatgaaaatgttctggaaatggatattggcggtggttacacaacactgtaaatgtgcttaatgccaccaaattgtacactgaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     170652 216 +   2037526 ccttttatataaagtagctagaataagcaaattcataggaaacatgaaaatagaatagagattaccaggggctggggtatggtaggagaatgggcagttatggtttaatgggtacagtttctgtttt-aggatgatgaaaatgttctggaaatggatattggcggtggttacacaacactgtaaatgtgcttaatgccaccaaattgtacactgaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74840335 207 + 122973662 c---ttatataaagtagctagaataagcaaattcata-gaaaca-gaaaatagaatagagattaccaggggctgggg---gtagggagaatgggcagttatggtttaatgggtacagtttctg-ttt-gggatgatgaaaatgttctggaaatggatattggtggtggttacacaacactgtaaatgtgcttaatgccaccaaattgtacactgaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30683282 192 + 172585720 c---ttatatgaggtagctagaataagctaattcata-gaaaca-gaaagtagaatagaggttaccagg------------------gaatgggcagttacgttttaatgggtacggtttcta-ttt-gggatgatgaaaatgttctggaaatggatattggtggtgactacacaacactgtaaatgtgcttaatgccaccaaattgtacactgaaa
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     198610 192 +   1495729 c---ttatatgaggtagctagaataagctaattcata-gaaaca-gaaagtagaatagaggttaccagg------------------gaatgggcagttatgttttaatgggtacagtttctg-tttggggatgatgaaaatgttctggaagtgga-attggtggtgactacacaacactgtaaatgtgcttaatgccaccaaattgtacactgaaa
i macNem1.NW_012012100v1   C 0 I 531
s cerAty1.NW_012002535v1     338486 192 -    863181 c---ttatatgaggtagctagaataagctaattcata-gaaaca-gaaagtagaatagcggttaccagg------------------gaatgggcagttatgttttaatgggtacggtttctg-ttt-gggaagatgaaaatgttctggaaatggatattggtggtgattacacaacactggaaatgtgctttatgccaccaaattgtacactgaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29373823 192 -  71996105 c---ttacatgaggtagctagaataagctaattcata-gaacca-gaaagtagaatagaagttaccagg------------------gaatgggcagttgtgttttaatgggtacggtttcta-ttt-gggatgatgaaaatgttctggaaatggatattggtggtgactacaccacactgtaaatgtgcttaatgccaccaaattgtacactgaaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     119671 192 -   1829203 c---ttatataaggtagctagaataagctaattcata-gaaaca-gaaaattgaatagaggttaccagg------------------gaatgggcagttgtgttttaatgggtacggtttctg-ttt-gggatgatgaaaatgttctggaaatggatattggtggtgattacacaacactgtaaatgtgcttaatgtcaccaaattgtacactgaaa
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464   5 +  18854210 I
e aotNan1.NW_018496904v1     104908 3628 -    383796 I
e calJac3.chr4             30309321 5120 + 171630274 I
e manLeu1.NW_012107142v1     150248 14530 -    735854 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=345795.000000
s hg38.chr6_GL000254v2_alt  1360458 88 +   4827813 aaatggttagaaggtaaattatatagtatgcatgttttaccacaatttacaaaaaaTATATCAACACTAAATCCAATCACAGCTCTCA
s panTro5.chr6             30233858 88 + 175400573 aaatggttagaaggtaaattatatagtatgcatgttttaccacaatttacaaaaaaTATATCAACACTAAATCCAATCACAGCTCTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30464400 88 + 173848474 aaatggttagaaggtaaattatatagtatgcatgttttaccacaatttacaaaaaaTATATCAACACTAAATCCAATCACAGCTCTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     170868 88 +   2037526 aaatggttagaaggtaaattatatagtatgcacgttttaccacaatTTACAAAAAATATATCAACACTAAATCCAATCACAGCTCTCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74840542 88 + 122973662 aagtggttagaaggtaaattatatagtatgtatgttttaccacaatttacaaaaaaTATATCAACACTAAATCCAATCACAGCTCTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30683474 88 + 172585720 acatggttagaaggtaaattatatagtacgtatgttttatcacaatttacaaaaaaTATATCAACACTAAATCCAATCACAGCTCTCA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     199333 88 +   1495729 AAATGGTTAGAAGGTAAATTATATAGTATGTATGTTTTATCACAATTTACAAAAAATATATCAACACTAAATCCAATCACAGCTGTCA
i macNem1.NW_012012100v1   I 531 C 0
s cerAty1.NW_012002535v1     338678 86 -    863181 acatggttagaaggtaaattatatagtatgtatgttttatcacaatttacaaaaaaTATATCAACAC--AATCCAATCACAGCTCTCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29374015 88 -  71996105 acatggttagaaggtaaattatatagtatgtatgttttatcacaatttacaaaaaaTATATCAACACTAAATCCAATCACAGCTCTCA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     119863 88 -   1829203 acatggttagaaggtaaattatatagtatgtatgttttaccacaaTTTACAAAAAATATATCAACACTAAATCCCATCACAGCTCTCA
i colAng1.NW_012115577v1   C 0 I 51
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464  5 +  18854210 I
e aotNan1.NW_018496904v1     104908 3628 -    383796 I
e calJac3.chr4             30309321 5120 + 171630274 I
e manLeu1.NW_012107142v1     150248 14530 -    735854 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=129433.000000
s hg38.chr6_GL000254v2_alt  1360546 51 +   4827813 TCAAG-TTTTTTTATACTGGTG-TTTCAACAAGCACATTGCCGCTGT-GGAGGG
s panTro5.chr6             30233946 51 + 175400573 TCGAG-TTTTTTTATACTGGTG-TTTCAACAAGCACATTGCCGCTGT-GGAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30464488 51 + 173848474 TCGAG-TTTTTTTATACTGGTG-TTTCAACAAGCACATTGCCGCTGT-GGAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     170956 53 +   2037526 TCGAG-TTTTTTTATACTGGTGTTTTCAACAAGCACATTGCCGCTGTGGGAGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74840630 51 + 122973662 TCGAG-TTTTTTTATACTGGTG-TTTCAACAAGCACATTGCCGCTGT-GGAGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30683562 51 + 172585720 TCCAGATTATTTTATAATGATG-TTTCAACAAGCACATTGCCACTGT--GGGGG
i rheMac8.chr4             C 0 I 6
s macNem1.NW_012012100v1     199421 52 +   1495729 CTGAGATTATTTTATAATGATG-TTTCAACAAGCATGTTGCCACTGT-GGGGGG
i macNem1.NW_012012100v1   C 0 I 6
s cerAty1.NW_012002535v1     338764 52 -    863181 TCGAGATTATTTTATAATGATG-TTTCAACAAGCACATTGTCACTGT-GGGGGG
i cerAty1.NW_012002535v1   C 0 I 6
s chlSab2.chr17            29374103 52 -  71996105 TCAAGATTATTTTATAATGATG-TTTCAACAAGCATGTTGCCACTGT-GGGGGG
i chlSab2.chr17            C 0 N 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464  5 +  18854210 I
e aotNan1.NW_018496904v1     104908 3628 -    383796 I
e calJac3.chr4             30309321 5120 + 171630274 I
e colAng1.NW_012115577v1     119951 51 -   1829203 I
e manLeu1.NW_012107142v1     150248 14530 -    735854 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=185097.000000
s hg38.chr6_GL000254v2_alt  1360597 53 +   4827813 GAGGGG-TCCTTGGAGTTCTTATGCCACCATGTTCTTTGGTGTCACTTCTCAGC
s panTro5.chr6             30233997 54 + 175400573 GAGGGGGTCCTTGGAGTTCTTATGCCACCATGTTCTTTGGTGTCACTTCTCAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30464539 54 + 173848474 GAGGGGGTCCTTGGAGTTCTTATGCCACCATGTTCTTTGGTGTCACTTCTCAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     171009 54 +   2037526 GAGGGTGTCCTTGGAGTTCTTATGCCACCATGTTCTTTGGTGTCACTTCTGAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74840681 54 + 122973662 GAGGGGGTCCTTGGAGTTCTTATGCCACCATGTTCTTTGGTGTCACTTCTCAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30683619 53 + 172585720 -GGGGGGTCCTTAGGGTTCTTATGCCACTATGTTCTTTTGTGTCACTCCTCAGC
i rheMac8.chr4             I 6 I 2824
s macNem1.NW_012012100v1     199479 53 +   1495729 -GGGGAGTCATTAGGGTTCTTATGCCACTATGTTCTTTTGTGTCACTCCTCAGC
i macNem1.NW_012012100v1   I 6 I 9808
s cerAty1.NW_012002535v1     338822 53 -    863181 -GGGGAGTCCTTAGGGTTCTTATGCCACTATGTTCTTCTGTGTCACTCCTCAGC
i cerAty1.NW_012002535v1   I 6 I 7107
s chlSab2.chr17            29236964 51 -  71996105 ---GAGGTCCTTGGAGTTCTTATGCCACCATGTTCTTTTGTGTCACTCCTCAGC
i chlSab2.chr17            N 0 I 3073
s colAng1.NW_012115577v1     120002 53 -   1829203 -GAGGGGTCCTTAGGGTTCTTACGCCATTATGTTCTTTTGCGTCACTCCTCAGC
i colAng1.NW_012115577v1   I 51 I 3141
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464  5 +  18854210 I
e aotNan1.NW_018496904v1     104908 3628 -    383796 I
e calJac3.chr4             30309321 5120 + 171630274 I
e manLeu1.NW_012107142v1     150248 14530 -    735854 I
e macFas5.chr4             29963949 33443 - 170955103 I

a score=7460.000000
s hg38.chr6_GL000254v2_alt  1360650 8 +   4827813 ACAACTTT
s panTro5.chr6             30234051 8 + 175400573 ACAACTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30464593 8 + 173848474 ACAACTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     171063 8 +   2037526 ACAACTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74840735 8 + 122973662 ACAACTTT
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           130265 9380 +    515838 I
e otoGar3.GL873550           213464 5 +  18854210 I
e aotNan1.NW_018496904v1     104908 3628 -    383796 I
e calJac3.chr4             30309321 5120 + 171630274 I
e colAng1.NW_012115577v1     120055 3141 -   1829203 I
e manLeu1.NW_012107142v1     150248 14530 -    735854 I
e chlSab2.chr17            29237015 3073 -  71996105 I
e cerAty1.NW_012002535v1     338875 7107 -    863181 I
e macNem1.NW_012012100v1     199532 9808 +   1495729 I
e macFas5.chr4             29963949 33443 - 170955103 I
e rheMac8.chr4             30683672 2824 + 172585720 I

a score=4365.000000
s hg38.chr6_GL000254v2_alt   1360658 3 +   4827813 ggt
s panTro5.chr6              30234059 3 + 175400573 ggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30464601 3 + 173848474 ggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      171071 3 +   2037526 ggt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             74840743 3 + 122973662 ggt
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             141374508 3 - 171630274 ggt
i calJac3.chr4             n 5120 C 0
e mm10.chr17                58018469 2227 -  94987271 I
e saiBol1.JH378341            130265 9380 +    515838 I
e otoGar3.GL873550            213464 5 +  18854210 I
e aotNan1.NW_018496904v1      104908 3628 -    383796 I
e colAng1.NW_012115577v1      120055 3141 -   1829203 I
e manLeu1.NW_012107142v1      150248 14530 -    735854 I
e chlSab2.chr17             29237015 3073 -  71996105 I
e cerAty1.NW_012002535v1      338875 7107 -    863181 I
e macNem1.NW_012012100v1      199532 9808 +   1495729 I
e macFas5.chr4              29963949 33443 - 170955103 I
e rheMac8.chr4              30683672 2824 + 172585720 I

a score=2100.000000
s hg38.chr6_GL000254v2_alt   1360661 1 +   4827813 g
s panTro5.chr6              30234062 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30464604 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      171074 1 +   2037526 g
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             74840746 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             29240088 1 -  71996105 g
i chlSab2.chr17            I 3073 C 0
s calJac3.chr4             141374511 1 - 171630274 g
i calJac3.chr4             C 0 C 0
e mm10.chr17                58018469 2227 -  94987271 I
e saiBol1.JH378341            130265 9380 +    515838 I
e otoGar3.GL873550            213464 5 +  18854210 I
e aotNan1.NW_018496904v1      104908 3628 -    383796 I
e colAng1.NW_012115577v1      120055 3141 -   1829203 I
e manLeu1.NW_012107142v1      150248 14530 -    735854 I
e cerAty1.NW_012002535v1      338875 7107 -    863181 I
e macNem1.NW_012012100v1      199532 9808 +   1495729 I
e macFas5.chr4              29963949 33443 - 170955103 I
e rheMac8.chr4              30683672 2824 + 172585720 I

a score=24228.000000
s hg38.chr6_GL000254v2_alt   1360662 7 +   4827813 gtcagag
s panTro5.chr6              30234063 7 + 175400573 gtcagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30464605 7 + 173848474 gtcagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      171075 7 +   2037526 gtcagag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             74840747 7 + 122973662 gtcagag
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1      209340 7 +   1495729 gtcagag
i macNem1.NW_012012100v1   I 9808 C 0
s chlSab2.chr17             29240089 7 -  71996105 gtcagag
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1      123196 7 -   1829203 gtcagag
i colAng1.NW_012115577v1   I 3141 C 0
s calJac3.chr4             141374512 7 - 171630274 gtcagag
i calJac3.chr4             C 0 C 0
e mm10.chr17                58018469 2227 -  94987271 I
e saiBol1.JH378341            130265 9380 +    515838 I
e otoGar3.GL873550            213464 5 +  18854210 I
e aotNan1.NW_018496904v1      104908 3628 -    383796 I
e manLeu1.NW_012107142v1      150248 14530 -    735854 I
e cerAty1.NW_012002535v1      338875 7107 -    863181 I
e macFas5.chr4              29963949 33443 - 170955103 I
e rheMac8.chr4              30683672 2824 + 172585720 I

a score=71586.000000
s hg38.chr6_GL000254v2_alt   1360669 18 +   4827813 cacaacttggttttatac
s panTro5.chr6              30234070 18 + 175400573 cacaacttggttttatac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30464612 18 + 173848474 cacaacttggttttatac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      171082 18 +   2037526 cacaacttggttttatac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             74840754 18 + 122973662 cacaacttggttttatac
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1      209347 18 +   1495729 cacaacttggttttatac
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17             29240096 18 -  71996105 cacaacctggttttatat
i chlSab2.chr17            C 0 N 0
s colAng1.NW_012115577v1      123203 18 -   1829203 cacaacttggttttatac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             141374519 18 - 171630274 tacagcttggttttatac
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1      108536 18 -    383796 cacaacttggttttatac
i aotNan1.NW_018496904v1   I 3628 C 0
e mm10.chr17                58018469 2227 -  94987271 I
e saiBol1.JH378341            130265 9380 +    515838 I
e otoGar3.GL873550            213464  5 +  18854210 I
e manLeu1.NW_012107142v1      150248 14530 -    735854 I
e cerAty1.NW_012002535v1      338875 7107 -    863181 I
e macFas5.chr4              29963949 33443 - 170955103 I
e rheMac8.chr4              30683672 2824 + 172585720 I

a score=1590347.000000
s hg38.chr6_GL000254v2_alt   1360687 401 +   4827813 attttaaggggacatgagacagtgatcaacatatgtaagctaaagattgattccgtctggaaaggcgggacaactcgaagcaaggagggggcttccaggtcacagatagatgagagacaaatgg-ttgcattcttttgag-tttccgattagcctttccaaatgagggaatcagacatgtgtttatctcagtgagcagaggggcgactctgaacag-atgggaggcaggtttaccctaagcag-ttcccagcttgacttttccctttagcttagtaattttggggccccaaga-ttttattttccttttacaGAACCATCAATACTTACAGaaaa-------------------------aaaaaa-accctgaatgtacacaaacctctataccaaactaccaatttacagaaaatacaggtaatagaaat
s panTro5.chr6              30234088 391 + 175400573 attttaaggggacatgagacagtgatcaacatatgtaagctaaagattgattccgtctggaaaggcgggacaactcgaagcaaggagggggcttccaggtcacagatagatgagagacaaatgg-ttgcattcttttgag-tttccaattagcctttccaaatgaggcaatcagacatgtgtttatctcagtgagcagaggggcgactttgaacag-atgggaggc---------ctacgcag-ttcccagcttgacttttccctttagcttagtaattttggggccccaaga-ttttattttccttttacaGAACCATCAATActtacagaaaa-------------------------aaaaaa--ccctgtatgtacacaaacctctataccaaactaccaatttatagaaaatacaggtaatagaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30464630 390 + 173848474 attttaaggggacatgagacagtgatcaacatatgtaagctaaagattgattccgtctggaaaggcgggacaactcgaagcaaggagggggcttccaggtcacagatagatgagagacaaatgg-ttgcattcttttgag-tttccaattagcctttccaaatgaggcaatcagacatgtgtttatctcagtgagcagaggggcgactttgaacag-atgggaggc---------ctacgcag-ttcccagcttgacttttccctttagcttagtaattttggggccccaaga-ttttattttccttttacaGAACCATCAATACTTACAGaaaa-------------------------aaaaa---ccctgtatgtacacaaacctctataccaaactaccaatttatagaaaatacaggtaatagaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      171100 402 +   2037526 attttaa-gggacatgagacagtgatcaacatatgtaagctaaagattgattccgtctggaaaggcgggacaactcgaagcaaggagggggcttccaggtcacagatagatgagagacaaatggtttgcattcttttgagttttccgattagcctttccaaatgaggcaatcagacatgtgtttatctcagtgagcagaggggcgactttgaacag-atgggaggcaggtttaccctaagcagtttcccagcttgacttttccctttagcttagtaattttggggccccaaga-ttttattttccttttacaGAACCATCAATACTTATAGAaaa-------------------------aaaaaa--ccctgaatgtacacaaacctctataccaaactaccaatttatagaaaatacaggtaatagaaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             74840772 402 + 122973662 attttaaggggacatgagacagtgatcaacatatgtaagctgaagattgattccgtctggaaaggcgggacaactcgaagcaaggagggggcttccaggtcacaggtagatgagagacaaatgg-ttgcattcttttgag-tttctgattagcctttccaaatgaggcaatcagacatgtgtttatctcagtgagcagaggggcgactttgaatag-atgggaggcaggtttgccctaagcag-tttccagcttgacttttccttttagcttagtaattttggggccccaaga-ttttattttccttttacaGAACCATCAATACTTACAGGaaa-------------------------aaaaaaaaccctgaatatacacaaacctctataccaaactaccaatttatagaaaatacaggtaatagaaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30686496 411 + 172585720 attttaaggggacatgagacagtgatcaacatatgtaaaatgaacattgattccattcagaaaggtggggcaactc-aagcaaggagggggcttccaggtcac-----------agacaaatag-ttgcattcttttgag-tttctgattagcctttccaaaggaagcaatcagacatgcatttatctcagtgagcagaggggtgactttgaatagaatgggaggcaggtttgccctaagcag-ttcccagcttgacttcttcctttagcttagtaattttggggccctaaga-ttttattttccttttacagaaccatcaatacttacaaaaaacaaaaacaaaaaacaaaaca-aaacaaaaaa--ccctgaatatacacaagcctctataccaaactaccaatttatagaaaataca--taatagaaac
i rheMac8.chr4             I 2824 C 0
s macNem1.NW_012012100v1      209365 420 +   1495729 atgttaaggggacatgagacagtgatcaacatatataaaatgaacattgattccgtccggaaaggtgggacaactc-aagcaaggagggggattccaggtcacaggtagatgagagacaaatgg-ttgcattcttttgag-tgtctgattagcctttccaaaggaggcaatcagacatgcatttatctcagtgagcagaggggtgactttgaatagaatgagagacaggtttgccctaagcag-ttcccagcttgactttttcctttagcttagtaattttggggccctaaga-ttttattttccttttacagaaccatcaacacttacagaaaaaaataacaaaaacaaaaaca-----aaaaaa--ccctgaatatacacaaacctctataccaaactaccaatttatagaaaatacaggtaatagaaat
i macNem1.NW_012012100v1   C 0 I 1500
s chlSab2.chr17             29386713 407 -  71996105 attttaaggggacatgagacagtgatcaacatatgtaaaatgaacattgattccgttcagaaaagtggggcaactc-aagcaaggagggggcttccaggtcac-----------agacaaatag-ttgcattcttttgag-tttctgattagcctttccaaaggaagcaatcagacacgcatttatctcagtgagcagaggggtgactttgaatagaatgggaggcaggtttgccctaagcag-ttcccagcttgacttcttcctttagcttagtaattttggggccctaaga-ttttattttccttttacagaaccatcaatacttacaaaaaacaaaaacaaaaaacaaaac------aaaaaa--ccctgaatatacacaaacctctataccaaactaccaatttatagaaaataca-gtaatagaaac
i chlSab2.chr17            N 0 C 0
s colAng1.NW_012115577v1      123221 426 -   1829203 attttaaggggacatgagacagtgatcaacatatataaaatgaacattgattccgtccggaaaggtgggacaactc-aagcaaggagggggattccaggtcacaggtagatgagagacaaatgg-ttgcattcttttgag-tgtctgattagcctttccaaaggaggcaatcagacacgcatttatctcagtgagcagaggggtgactttgaatagaatgagagacaggtttgccctaagcag-ttcccagcttgactttttcctttagcttagtaattttggggccctaagatttttattttccttttacagaaccatcaatacttacagaaaacaaaaacaaaaacaaaaacaaaaacaaaaaa--ccctgaatatacacaaacctctatacaaaactaccaatttatagaaaatacaggtaatagaaat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             141374537 390 - 171630274 attttagggagacaggagacattgatcaacatatgtaagatgaacattcattctttccaaaaaggctgga-aactggaagtaatga-gcggcttccaggtcacaggtagataagagacaaatgt-ttgcattcttttgag-tttctgattagcctctccaaaggaggcaatgagacatgtatttatctcagtgagcgga-----gactttgaatagaatgggaggcaggtttgccctaagcag-ttccctgcttgacttttcctcttagcttagtgattttggaacctcaaga--tttatttcccttctacagtaccatcaatgcttacagaaaa-------------------------taa-----acctgagtatacacaaacctttacaccaaactatgaatttatggaaaatacaggtactagaggt
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1      108554 379 -    383796 attttagggagacatgagacattgatcaacatatgtaagatgaacattgattcattcaggaaaggcagga-aactggaagcaacga-ggggctt-caggtcacaggtagataagagacaaatgg-ttgcattattttgag-tttctgattagcct------------caatgagacatgcatttagctcagtgagcagaggggtgactttgaatagaatgggaggcaggtttgccctaaacag-ttcccagcttgacttttccccttagcttagggatttgtgggcctcaaga--tttattctccttCTAT-GTACCATCAATATCTACagaaaa-------------------------t-------atctgaatatacacaaacctctatatcaaacaatgaatttatagaaaatacaggtaatagagat
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17                58018469 2227 -  94987271 I
e saiBol1.JH378341            130265 9380 +    515838 I
e otoGar3.GL873550            213464   5 +  18854210 I
e manLeu1.NW_012107142v1      150248 14530 -    735854 I
e cerAty1.NW_012002535v1      338875 7107 -    863181 I
e macFas5.chr4              29963949 33443 - 170955103 I

a score=453229.000000
s hg38.chr6_GL000254v2_alt   1361088 102 +   4827813 --acattaaaccacaccttggcgtgcaatccacaaaatgcaaacaataggaaaccttaccatacaaTATAAATTTCAAGGAGAAACCTATGGAACAAATGAGAA
s panTro5.chr6              30234479 102 + 175400573 --acattaaaccacaccttggcgtgcaatccacaaaatgcaaacaataggaaaccttaccatacaaTATAAATTTCAAGGAGAAACCTATGGAACAAATGAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30465020 102 + 173848474 --acattaaaccacaccttggcgtgcaatccacaaaatgcaaacaataggaaaccttaccatacaaTATAAATTTCAAGGAGAAACCTATGGAACAAATGAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      171502 102 +   2037526 --acattaaaccacaccttggcgtgcaatccacaaaatgcaaacaataggaaaccttaccatacaaTATAAATTTCAAGGAGAAACCTATGGAACAAATGAGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             74841174 102 + 122973662 --acattaaaccacaccttggcatgcaatccacaaaatgcaaacaataggaaaccttaccatacaaTATAAATTTCGAGGAGAAACCTATGGAACAAATGAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30686907 102 + 172585720 --acattaaaccacaccttggtgtgcaatccacaaaatgcaaacaaccggaaagcttaccatacaaTATAAATTTCAAGGAGAAACCTATAGAACAAATGAGAA
i rheMac8.chr4             C 0 I 94993
s macNem1.NW_012012100v1      211285 102 +   1495729 --acattaaaccacaccttggtgtgcaatccacaaaatgcaaacaaccggaaagcttaccatacaaTATAAATTTCAAGGAGAAACCTATAGAACAAATGAGAA
i macNem1.NW_012012100v1   I 1500 C 0
s chlSab2.chr17             29387120 102 -  71996105 --acattaaaccacaccttggtgtgcaatccacaaaatgcaaacaactggaaagcttaccatacaaTATAAATTTCAAGGAGAAACCTGTAGAACAAATGAGAA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1      123647 102 -   1829203 --acattaaaccacaccttggtgtgcaatccacaaaatgcaaacaacaggaaatcttaccaaacaaTATAAATTTCAAGGAGAAACCTATAGAACAAATGAGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             141374927 104 - 171630274 acatagtaaattacatcttggtgtgcaatccacaaaaggcaaacaataggaaacttcacaatacaatataaatttCAAGGAGAAACCTATAGAACAAATGAGAA
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1      108933  97 -    383796 ccatagtaaatcacatcatggcgtgcaatccacaaaaggcaaacaataagaacctt-acaatacaaTATAAATTTCAAGGAGAAACCTATAG------TGAGAA
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17                58018469 2227 -  94987271 I
e saiBol1.JH378341            130265 9380 +    515838 I
e otoGar3.GL873550            213464   5 +  18854210 I
e manLeu1.NW_012107142v1      150248 14530 -    735854 I
e cerAty1.NW_012002535v1      338875 7107 -    863181 I
e macFas5.chr4              29963949 33443 - 170955103 I

a score=210906.000000
s hg38.chr6_GL000254v2_alt   1361190 47 +   4827813 CAAAAAACATATTTTTAAAGGTAAAACTAAACTATAATTTTGGATGA
s panTro5.chr6              30234581 47 + 175400573 CAAAAAACATATTTTTAAAGGTAAAACTAAACTATAATTTTGGATGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30465122 47 + 173848474 CAAAAAACATATTTTTAAAGGTAAAACTAAACTATAATTTTGGATGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      171604 47 +   2037526 CAAAAAACATATTTTTAAAGGTAAAACTAAACTATAATTTTGGATGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             74841276 47 + 122973662 CAAAAAACATATTTTTAAAGGTAAAACTAAACTATAATTTTGGATGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30782002 47 + 172585720 CAAAAAACATATTTTTAAAGGTAAAACTAAACTATAATTTTGGGTGa
i rheMac8.chr4             I 94993 T 84240
s macNem1.NW_012012100v1      211387 47 +   1495729 CAAGAAACATATTTTTAAAGGTAAAACTAAACTATAATTTTGGATGa
i macNem1.NW_012012100v1   C 0 I 12583
s chlSab2.chr17             29387222 47 -  71996105 CAAGAAACATATTTTTAAAGGTAAAACTAAACTATAATTTTGGATGA
i chlSab2.chr17            C 0 I 9577
s colAng1.NW_012115577v1      123749 46 -   1829203 -CAAAAACATAGTTTTAAaggtaaaactaaactataattttggatga
i colAng1.NW_012115577v1   C 0 I 10748
s calJac3.chr4             141375031 46 - 171630274 C-AAAAACATATTTTAAAAAGTAAACCAAAACTATAATTTTGGATGA
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1      109030 47 -    383796 CAAAAAACATATTTTAAAAAGTAAACCAAAACTGTAATTTTGGATGA
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17                58018469 2227 -  94987271 I
e saiBol1.JH378341            130265 9380 +    515838 I
e otoGar3.GL873550            213464  5 +  18854210 I
e manLeu1.NW_012107142v1      150248 14530 -    735854 I
e cerAty1.NW_012002535v1      338875 7107 -    863181 I
e macFas5.chr4              29963949 33443 - 170955103 I

a score=15695.000000
s hg38.chr6_GL000254v2_alt   1361237 10 +   4827813 TGAAAATATA
s panTro5.chr6              30234628 10 + 175400573 TGAAAATATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30465169 10 + 173848474 TGAAAATATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      171651 10 +   2037526 TGAAAATATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             74841323 10 + 122973662 TGAAAATACA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             141375077 10 - 171630274 AGAAAATATA
i calJac3.chr4             C 0 n 0
s aotNan1.NW_018496904v1      109077 10 -    383796 AGAAAATGTA
i aotNan1.NW_018496904v1   C 0 N 0
e mm10.chr17                58018469 2227 -  94987271 I
e saiBol1.JH378341            130265 9380 +    515838 I
e otoGar3.GL873550            213464  5 +  18854210 I
e colAng1.NW_012115577v1      123795 10748 -   1829203 I
e manLeu1.NW_012107142v1      150248 14530 -    735854 I
e chlSab2.chr17             29387269 9577 -  71996105 I
e cerAty1.NW_012002535v1      338875 7107 -    863181 I
e macNem1.NW_012012100v1      211434 12583 +   1495729 I
e macFas5.chr4              29963949 33443 - 170955103 I
e rheMac8.chr4              30782049 84240 + 172585720 T

a score=9205241.000000
s hg38.chr6_GL000254v2_alt  1361247 1092 +   4827813 aagtccagcatagggaagcagttcctttagaattttagtcacaattaatggaagggtactgaaacctgctatttcccagttgaataacaggtcctggggatatagaaggtcttgccacaagttgaatccataactgctgctttcctggtaccagggag-aacaggtttcctatcaaggactgggt---aggagtgtttgccaggcctgtatcagctattgcccaagtttccactttacaaaag-tgccatgcatacatgcaacaacatagtgccttctcca-tgcatcccttaagagatgaactgcatgctatcttagggccagtacattatgagtccagtgctgcccctattgtggagccctcacaggagatgtctccaatggtacatgaaggcatggccctcattcctgataatgcttggtacttagatgcattgagccaaggtaaccctgtgtatggacagtagtagctgcacaacc----acagacagtatctggtttgagatgggaatgcaacagagcagtcaatgggcagaactccaagctacatggttggtttgtacccgtgagccaccacctatagttctctgtacagacagtct-ggcagtacttaagggtcttacaattt-ggcttgcccaaagggcctgagatgattggtatataatttaaaaatccttatggggagctggtatgtggaaagacatttggaaaagtctacaggaacccactgtggacctaattgcttcagcacactggtcagattcacctcccagaaacatggaggcagacatcctagcaaaaattagaatactg-agctagttgattaggtacatatcacagtggggatttcagtgcatgaatgggctgccaaatagcaaagggagcaggattggctctctgctatgcagatttagtgg--tggc-ggtagcaaactgcttaatttgttcc-cgtctgtacctctgccacatcccacatacacctggacatatacataagacagccacccctgtgacagactggtagatagactacatcagacccttgccagtaatcttgagacgaaagtatgcactaacatgt-gtatacactg-ccatgggattgtt
s panTro5.chr6             30234638 1092 + 175400573 aagtccagcatagggaagcagttcctttagaattttagtcacaattaatggaagggtactgaaacctgctatttcccagttgaataacaggtcctggggatatagaaggtcttgccacaagttgaatcgataactgctgctttcctggtaccagggag-aacaggtctcctatcaaggactgggt---aggagtgtttgccaggcctgtatcagctattgcccaagtttccactttacaaaag-tgccatgcatacatgcaacaacatagtgccttctcca-tgcatcccttacgagatgaactgcatgctatcttagggccagtacattatgagtccagtgctgcccctattgtggagccctcacaggagatgtctccaatggtacatgaaggcatggccctcattcctgataatgcttggtacttagatgcattgagccaaggtaaccctgtgtatggacagtagtagctgcacaacc----acagacagtatctggtttgagatgggaatgcaacagagcagtcaatgggcagaactccaagctgcatggttggtttgtacccgtgagccaccacctatagttctctgtacagacagtct-ggcagtacttaagggtcttacaattt-ggcttgcccaaagggccggagatgattggtatataatttaaaaatccttatggggagctgatatgtggaaagacatttggaaaagtctacaggaacccactgtggacctaattgcttcagcacactggtcagattcacctcccagaaacatggaggcagacatcctagcaaaaattagaatactg-agctagttgattaggtacatatcacagtggggatttcagtgcatgaatgggctgccaaatagcaaagggagcaggattggctctctgctatgcagatttagtgg--tggc-ggtagcaaactgcttaatttgttcc-cgtctgtacctctgccacatcccacatacacctggacatatacataagacagccacccctgtgacagactggtagatagactacatcagacccctgccagtaatcttgagacgaaagtatgcactaacatgt-gtatacactg-ccatgggattgtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30465179 1092 + 173848474 aagtccagcatagggaagcagttcctttagaattttagtcacaattaatggaagggtactgaaacctgctatttcccagttgaataacaggtcctggggatatagaaggtcttgccacaagttgaatcgataactgctgctttcctggtaccagggag-aacaggtctcctatcaaggactgggt---aggagtgtttgccaggcctgtatcagctattgcccaagtttccactttacaaaag-tgccatgcatacatgcaacaacatagtgccttctcca-tgcatcccttacaagatgaactgcatgctatcttagggccagtacattatgagtccagtgctgcccctattgtggagccctcacaggagatgtctccaatggtacatgaaggcatggccctcattcctgataatgcttggtacttagatgcattgagccaaggtaaccctgtgtatggacagtagtagctgcacaacc----acagacagtatctggtttgagatgggaatgcaacagagcagtcaatgggcagaactccaagctgcatggttggtttgtacccgtgagccaccacctatagttctctgtacagacagtct-ggcagtacttaagggtcttacaattt-ggctagcccaaagggctggagatgattggtatataatttaaaaatccttatggggagctgatatgtggaaagacatttggaaaagtctacaggaacccactgtggacctaattgcttcagcacactggtcagattcacctcccagaaacatggaggcagacatcctagcaaaaattagaatactg-agctagttgattaggtacatatcacagtggggatttcagtgcatgaatgggctgccaaatagcaaagggagcaggattggctctctgctatgcagatttagtgg--tggc-ggtagcaaactgcttaatttgttcc-cgtctgtacctctgccacatcccacatacacctggacatatacataagacagccacccctgtgacagactggtagatagactacatcagacccctgccagtaatcttgagacgaaagtatgcactaacatgt-gtatacactg-ccatgggattgtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     171661 1100 +   2037526 aagtccagcatagggaagcagttcctttagaattttagtcacaattaatggaagggtactgaaacctgctatttcccagttgaataacaggtcctggggatatagaaggtcttgccacaagttgaatccataactgctgctttcctggtaccagggagaaacaggtctcctatcaaggactgggt---aggagtgtttgccaggcctgtatcagctattgcccaagtttccactttacaaaagttgccatgcatacatgcaacaacatagtgccttctccattgcatcccttaagagatgaactgcatgctatgttagggccagtaaattatgagtccagtgctgcccctattgtggagccctcacaggagatgtctccaatggtacatgaaggcatggccctcattcctgataatgcttggtacttagatgcattgagccaaggtaaccctatgtatggacagtagtagctgcacaacc----acagacagtatctggtttgagatgggaatgcaacagagcagtcaatgggcagaactccaagctgcatggttggtttgtacccgtgagccaccacctatagttctctgtacagacagtctgggcagtacttaagggtcttacaatttgggcttgcccaaagggcctgagatgattggtatataattttaaaatccttat-gggagctgatatgtggaaagacatttggaaaagtctacaggaa-ccactgtggacctaattgcttcagcacactggtcagattcacct-ccagaaacatggaggcagacatcctagcaaaaattagaatactgaagctggttgattaggtacatatcacagtggggatttcagtgcacgaatgggctgccaaatagcaaagagagcaggattggctctctgctatgcagatttagtgggttggcgggtagcaaactgcttaatttgttcc-cgtctgtacctctgccacatcccacatacacctggacatatacataagacagccacccctgtgacagactggtagatagactacatcagacccctgccagtaatcttgagacgaaagtatgcactaacatgtggtatacactgcccatgggattgtt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74841333 1080 + 122973662 aagtccagcatagggaagcagttcctttagaattttagtcacaatt-atagaagggtactgaaacctgctatttcccagttgaacaacaggtcctggggatatagaaggtcttgccacaagttgaatccataactgccgctttcctggtaccagggag-aacaggtctcctatcaaggactgggt---aggagtgtttgccaggcctgtatcagctattgcccaagtctccactttacaaaag-tgccatgcatacatgcaacaacatagtgccttctcca-tgtgtcccttaagagatgaactgcatgctatcttagggccagtacattatgagtccagtgctgcccctattgtggcgccctcacaggagatgtctccaatggtacatgaaggcatggccctcattcctgataatgcttggtacttagacgcatcgagccaaggtaaccctgtgtatggacagtagtagctgcacaaccacagacagacagtatctggtttgagatgggaatgcaacagagcagtcaatgggcagaactccaagctgcatggttggtttgtacccgtgagccaccacctatagttctctgtacagacaatct-ggcagtacttaagggtcttacaattt-ggcttgcccaaagggcccaagatgattggtatataatttaaaaatccttatggggagctggtatgtggaaagacatttggaaaagtctacaggaacccattgtggaccgaattgcttcagcacactggtcagattcacctcccagaaacatggaggcag-------------aattagaatactg-agctagttgattaggtacatatcacagtggggatttcagtgcatgaatgggctgccaaatagcaaagggagcaggattggctctctgctatgcagatttagtgg--tggt-ggtagcaaactgcttaatttgttcc-cgtctgtacctctgccacatcccacatacacctggacatatacataagacagccacccctgtgacagactggtagatagactacatcagacccctgccagtaatctt--gacaaaagtatgcactaacatgt-gtatatactg-ccatgggattgtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30697809 1070 + 172585720 aagtccagcatagggaagcagttcctttaggattttagtcacaatt-atggaagggtactgaaacctgctatttcccaattgaacaacagatcctggggatatagaaggtcttgccaccagttgaatcctcaactgctgctttcctggtaccagggag-aacaggcctcctatcaaggactgggtagaaggaatgtttgccaggcctgtatcagctattgcccaagtcttcactttacaaaag-tgccatgcatacatgcaacaacatagtgtcttttcca-tgcatcccttaagagatgaactgcatgctatcttagggccagtgcattatgagtccagtgctacctctattgtggagcccccacaggaaatgtctccaatggtacatgaaggcatggccctcattcctgacaatgcttggtacttag---------------------------atggacagtagtagctgcacaaccacagatagatagtatctggtttgagatgggaatgcagcagagcagtcaatgggcagaactctgagctgcatggttggtttgta-ccgtgagccactgactatagttctctgtacagacagtct-ggcagtacttaaaggtcttacaattt-ggcttgcccaaagggcccgagataattggtatataattttaaaatccttatgggcagctggtatgtggaaagacatttggaaaagtctacaggaacccactgtggacctaattgcttcagcacactggtcagattcacctcccagaaacatgaaggcagacatcctagcaaaaattagaatactg-agctagttgattaggtacatatcacagtggggatttcagtgcatgaataggctgccaaatagcaaagggagcaggattgtctctctgctatgcagatttagtgg--tggc-ggtagcaaactgcttaatttgttccttttctgtacttctaccacatcccccatacacctggacatatacataagacagccgcccctgtgacagact-gtagatagattatatcagacccctgccagtaatcttcagacaaaagtatgcactaacatgt-gtatacactg-ccatgggactgtt
i rheMac8.chr4             T 84240 C 0
s macFas5.chr4             29997392 1071 - 170955103 aagtccagcatagggaagcagttcctttaggattttagtcacagtt-atggaagggtactgaaacctgctatatcccaactgaacaacaggtcctggggatatagaaggtcttgccaccagttgaatcctcaactgctgctttcctggtaccagggag-aacaggtctcctatcaaggactgggtagaaggaatgtttgccaggcctgtatcagctattgcccaagtcttcactttacaaaag-tgccatgcatacatgcaacaacatagtgtcttttcca-tgcatcccttaagagatgaactgcatgctatcttagggccagtgcattatgagtccagtgctgcccctatcgtggagcccccacaggagatgtctccaatggtacatgaaggcatggccctcattcctgacaatgcttggtacttag---------------------------atagacagtagtagctgcacaaccacagatagatagaatctggtttgagatgggaatgcagcagagcagtcaatgggcagaactccgagctgcatggttggtttgtacccgtgagccaccgcctatagttctctgtacagacagtct-ggcagtacttaaaggtcttacaattt-ggcttgcccaaagggcccgagataattggtatataattttaaaatccttatgggcagctggtatgtggaaagacatttggaaaagtctacaggaacccactgtggacctaattgcttcagcacactggtcagattcacctcccagaaacatgaaggcagacatcctagcaaaaattagaatactg-agctagttgattaggtacatatcacagtggggatttcagtgcatgaataggctgccaaatagcaaagggagcaggattgtctctctgctatgcagatttagtgg--tggc-ggtagcaaactgcttaatttgttccttttctgtacttctaccacatcccacatacacctggacacatacataagacagccgcccctgtgatagact-gtagatagattatatcagacccctgccagtaatcttcagacaaaagtatgcactaacatgt-gtatacactg-ccatgggactgtt
i macFas5.chr4             I 33443 C 0
s macNem1.NW_012012100v1     224017 1071 +   1495729 aagtccagcatagggaagcagttcctttaggattttagtcacaatt-atggaagggtactgaaacctgctatttcccaattgaataacaggtcctggggatatagaaggtcttgctaccagttgaatcctcaactgctgctttcctggtaccaggggg-aacaggtctcctatcaaggactgggtagaaggaatgtttgccaggcctgtatcagctattgcccaagtctccactttacaaaag-tgccatgcatacatgcaacaacatagtgtcttttcca-tgcatcccttaagagatgaactgcatgctatcttagggccagtgcattatgagtccagtgctgcccctattgtggagtccccacaggagatgtctccaatggtacatgaaggcatggccctcattcctgacaatgcttggtacttag---------------------------atggacagtagtagctgcacaaccacagatagatagtatctggtttgagatgggaatgcagcagagcagtcaatgggcagaactccgagctgcatggttggtttgtacccgtgagccactgcctatagttctctgtacagacagtct-ggcagtacttaagggtcttacagttt-ggcttgtccaaagggcccgagatgattggtgtataattttaaaatccttatgggcagctggtatgtggaaagacatttggaaaagtctacaggaacccactgtggacctaattgctttagcacactggtcaggttcacctcccagaaacatgaaggcagacatcctagcaaaaattagaatactg-agctagttgattaggtacatatcacagtggggatttcagtgcatgaacaggctgccaaatagcaaagggagccggattgtctctctgctatggagatttagtgg--tggc-ggtagcaaactgcttaatttgttccttttctgtacctctaccacatcccacatacacctggacatatacataagacagccgcctctgtgacagact-gtagatagactatatcagacccctgccagtaatcttgagacaaaagtacgcactaacatgt-gtatacactg-ccatgggactgtt
i macNem1.NW_012012100v1   I 12583 C 0
s cerAty1.NW_012002535v1     345982 1098 -    863181 aagtccagcatagggaagcagttcctttaggattttagtcacaatt-atggaagggtactgaaacctgctatttcccaattgaacaacaggtcctggggatatagaaggtcttgccaccagttgaatcctcaactgctgctttcctggtaccagggag-aacaggtctcctatcaaggaccaggtagaaggaatgtttgccaggcctgtatcagctattgcccaagtctccactttacaaaag-tgccatgcatacatgcaacaacatagtgtcttttcca-tgcatcccttaagagatgaactgcatgctatcttagggccagtgcattatgagtccagtgctgcccctattgtggagcccccacaggagatgtctccaatggtacatgaaggcatggccctcattcctgacaatgcttggtacttagatgcatcgagccaaggtaaccctgtgtatggacagtagtagctgcacaaccacagatagacagtatctggtttgagatgggaatgcagcagagcagtcaatgggcagaactccaagctgcatggttggtttgtacccgtgagccaccgcctatagttctctgtacagacagtct-ggcagtacttaagggtcttacaattt-ggcttgcccaaagggcccgagatgattggtatataattttaaaatccttatgggcagctggtatgtggaaagacattcggaaaagtctacaggaacccactgtggccctaattgcttcagcacactggtcagattcacctcccagaaacatgaaggcagacatcctagcaaaaattagaatactg-agctagttgattaggtacatatcacagtggggatttcagtgcatgaacaggctgccaaatagcaaagggagcaggattgtctctctgctatggagatttagtgg--cggc-ggtagcaaactgcttaatttgttccttttctgtatctctaccacatcccacatacacctggacatatacataagacagccacccctgtgacagact-gtagatagactatatcagacccctgccagtaatcttcagacaaaagtatgcactaacatgt-gtatacactg-ccatgggactgtt
i cerAty1.NW_012002535v1   I 7107 C 0
s chlSab2.chr17            29396846 1071 -  71996105 aagtccagcatagggaagcagttcctttaggattttagtcacaatt-atggaagggtactgaaacctgctatttcccaattgaacaacaggtcctggggatatagaaggtcttgccaccagttgaatcctcaactgctgctttcgtggtaccagagag-aacaggtctcctatcaaggaccgggtagaaggaatgtttgccaggcctgtatcagctattgcccaagtctccactttacaaaag-tgccatgcatacatgcaacaacatagtgtcttttcca-tgcatcccttaagagatgaactgtttgctaccttagggccagtgcattatgagtccagtgctgcccctattgtggagcccccacaggagatgtctccaacggtacatgaaggcatggccctcattcctgacaatgcttggtacttag---------------------------atggacagtagtagctgcacaaccacggatagatagtatctggtttgagatgggaatgcagcagagcagtcaatgggcagaactccgagctgcatggttggtttgtacccatgagccaccgcctatagttctctgtacagacagtct-ggcagtacttaagggtcttacaattt-ggcttgcccaaagggcccgagatgattgttatataattttaaaatccttatgggcagctggtatgtggaaagacgtttggaaaagtctacaggaacccactgtggacctaattgcttcagcacacgggtcagattcacctcccagaaacatgaaggcagacatcctagcaaaaattagaatactg-agctagttgattaggtacatatcacagtggggatttcagtgcatgaataggctgccaaatagcaaagggagcaggattgtctctctgctatggagatttagggg--tggt-ggtagcaaactgcttaatttgttccttttctgtatctctaccacatcccacatacacctggacatatacataagacagctgcctctgtgacagact-gtagatagactataccagacccctgccagtaatcttcagacaaaagtatgcactaacatgt-gtatacactg-ccatgggactgtt
i chlSab2.chr17            I 9577 C 0
s manLeu1.NW_012107142v1     164778 1071 -    735854 aagtccagcatagggaagcagttcctttaggattttagtcacaatt-atggaagggtactgaaacctgctatttcccaattgaataacaggtcctggggatatagaaggtcttgccaccagttgaatcctcaactgctgctttcctggtaccagggag-aacaggtctcctatcaaggactgggtagaaggaatgtttgccaggcctgtatcagctattgcccaagtctcccctttacaaaag-tgccatgcatacatgcaacaacatagtgtcttttcca-tgcatcccttaagagatgaactgcatgctatcttagggccagtgcattatgagtccagtgctgcccctattgtggagtccccacaggagatgtctccaatggtacatgaaggcatggccctcattcctgacaatgcttggtacttag---------------------------atagacagtagtagctgcacaaccacagatagatagtatctggtttgagatgggaaggcagcagagcagtcaatgggcagaactccgagctgcatggttggtttgtacccgtgagccaccgcctatagttctctgtacagacagtct-ggcagtacttaagggtcttacagttt-ggcttgtccaaagggcccgagatgattggtgtataattttaaaatccttatgggcagctggtatgtggaaagacatttggaaaagtctacaggaacccactgtggacctaattgcttcagcacactggtcagattcacctcccagaaacatgaaggcagacatcctagcaaaaattagaatactg-agctagttgattaggtacatatcacagtggggatttcagtgcatgaacaggctgccaaatagcaaagggagctggattgtctctctgctatggagatttagtgg--tggc-ggtagcaaactgcttaatttgttccttttctgtacttctaccacatcccacatacacctggacatatacataagtcagccgcctctgtgacagact-gtagatagattatatcagacccctgccagtaatcttgagacaaaagtatgcactaacatgt-gtatacactg-ccatgggactgtt
i manLeu1.NW_012107142v1   I 14530 C 0
s colAng1.NW_012115577v1     134543 1059 -   1829203 aagtccagcatagggaagcagttcctttaggattttagtcacaatt-atggaagggtactgaaatctgctatttcccacttgaacaacaggtcctggggatatagaaggtcttgccaccagttgaatcctcaactgctgctttcctggtaccagggag-aacaggcctcctatcaaggactgggtagaaggaatgtttgccaggcctatatcagctattgcccaagtctccactttacaaacg-tgccatgcatacatgcaacaacatagtgtcttttcca-tgcatcccttaagagatgaactgcatgctatcttagggccagtgcattatgagtccagcactgcccctattgtggagcccccacaggagatgtctccaatggtacatgaaggcatggccctcattcctgacaatgcttggtacttag---------------------------atggacagtagtagctgcataaccacaggtagatagtatctggtttgagatgggaatgcagcagagcagtcaatgggcagaactctgagctgcatggttggtttgtacccatgagccaccgcctatagttctctgtacagacagtct-ggcagtacttaagggtcttacaattt-ggcttg-ccaaagggcccgagatgattggtacataattttaaaatccttatgggcagctggtatgtggaaagacatttggaaaagtctacaggaacccactgtggacctaattgcttcagcacactggtcagattcacctcccagaaacaggaaggcagacatcccagcaaaaattagaacactg-agctagttgattagatacatatcacagtggggatttcagtgcatgaataggctgccaaatagcaaagggagcaggattgtctctctgctatgcagatttagtgg--tggc-ggtagcaaactgcttaatttgttccttttctgtacctctaccacatcccacatacacctggacacatacataagacagctgcccctgt------------tttagaccacattaaacacctgccagtaaacgtgggtcaaaagtatgcactaacatgt-gtatacactg-ccatgggactgtt
i colAng1.NW_012115577v1   I 10748 C 0
s calJac3.chr4             30314441 1074 + 171630274 AAGTCCAGCATTGAGAAGCAgttcctttcggattttagtcacgatt-atggaagggtactgaaacctgctatttcccaattgaacaacaggtcctaggggtatagaaggtcttgccacaagttgaatccacaccTGCTGCTTTCCTGGTACCAGGGAG-AACAGG--TTCTAACAAGGACTGGGT---AGGAGTGTTTGCCAGGCCTGCATTAACTACTGCCCAAGTCTCCACTTTACAAAAG-TGGCATGCATACACGCAACTACATAGTGCCCTCTCCA-TGCGTTCCTTAGGAGATAAACTGCCTGCTATCTTAGGGCCAATACATTATGAGTCCAGTGCTGCTCCTATTGTGGAGCCCCCACAGGAGATGTCTCCAATGGTACATTAAGGCATGGTCCCCTTTCCTGACAATGCTTGGTACTCAGATGGATTGAGCCCAGGTATCTCTGTGTATGGACAGTAGTAGCTGCACAACGACAGACCAAAAGCATCTGGTTTGAGATGGGAATGCAACAGAGCAGTCAATGGGCAGAACTCCGAGCTGCATAGCTGCTTTGTACCTATGAGCCACCACCTACAGTTCTCTATACGGACAG-------------TAAGAGTCTTACTATTT-GGCTTGCCCAAAAGGCCTGCAATAATGGGTATATAATTTAAAAATCCTTATGGGGAGCTGGTATGTGGAAAGACATTTGGAAAAGTCTACAGGAACCCGCTATGGACCTAATTGCTTCAGCGCACTGGTCAGATTCACTTCCCACCAACATGGAGGCAGATAACCTACCAAAAATTAGAATACTG-AGTTAGTTGATTAGGTACATACCATAGTGGGCATCTCTGTGCATGAGTGGGCTGGCAAATAGCAAACAGATCAAGATTAGCTCTCTGCTATGCAGATTTGGTGG--TGGG-AGCAGCAAACTGCTTCTTGTGTTTC-CACCTGTATCTCTGCCACATTCCACAAATACCTGGACATAGACATAAGACAGCCGCCCCTGTGAGAGACT----GGTAGACTACATCAGAccc-tgccagtaatctcgggacaaacgtatgcactaac--gt-gtatacactg-ccatgggatcatt
i calJac3.chr4             I 5120 C 0
s saiBol1.JH378341           139645 1090 +    515838 AAGTCCAGAACAGAGAAGCAgttcctttaggattttagtcacaatt-atagaagggtaccgaaacctgcgatttcccaattgaacaacaggtcccaggggtatagaaggtcttgccacaagttgaatccatACCTGCTGCTTTCCTGGTACCAGGGAG-AACAGG--TCCTATCAAGGACTGGGTAGAAGGAGTATTTGACAGGCCTGCATTAACTACTGCCCAAGTCTCCACTTTACAAAAG-TGGCATGCATACATGCAACTACATAGTGCCCTCTCCG-TGCATTCCTTAGGAGATGAACTGCCTGCTATCTTAGGGCCAGTACATTATGAGTCCAGTGCTGCCCCTACTGTGGAGCCCCCACAGGAGATGTCTCCAATGGTACATTAAGGAATGGTCCCCTTTCCTGACAATgcttggtactcagatggattgagcccaggtatctctgtgtatggacagtagcagctgcagaaccacagacaggtagtatctgatttgagatgggaatgcaacagagcagtcaatgggcagaactccgagctgcatggctgctttgtacctatgaaccaccacctataattctctatacagaccatct-ggcagtacttaagagtcttataattt-gacttgcccaaaaggcctgagataatgagtatataattttaaaatccttatggggagctgatatgtggaaagacatTTGGAAAAGTCTACAGGAACCCACTATGGACCTAATTGCTTCAGCACACTGGTCAGATTCACTTCCCACCAACATGGAGGCAGATATCCTAGCAAAACTTAGAATACTG-AGCTGGTTGATTAGGTACGTACCATAGTGGGCATCCCAGTGCAGGAGTGGGCTGGCAAATAGCAAAGGGATCAAGATTAGTTATCTGCTATGCTGATTTAGTGG--TGGG-AGTAGCAAACTGCTTCATGTGTTTC-CACCTGTACCTCTGCCACATCCCACATACACCTGGACATGGAAATAAGACAGCCGCCCctgtgagagact----ggtagactacatcagacccgtgccagtaatgtcaggacaaatgtatgcgctaac--gt-gtatgcactg-ccatgggatcgtt
i saiBol1.JH378341         I 9380 C 0
s aotNan1.NW_018496904v1     244371 1088 -    383796 aagtccagcatagagaagcagttcctttaggatttgagttacaatt-atggaagggtactgaaacctgctatttcccaattggacaacaggtcctatgggtatagaaggtcttgccacaagttgaatccatacctgctgctttcctgataccaaggag-aacagg--tcctatcaaggactgggtagaaggagtgtttgccaggcctgcattaactactgcccaagtctccactttacaaaag-tggcatgcatatctgcaaccacatagtgccctctcca-tgtgttccttaggagatgaactgcctgctatcttagggccaggacattatgagtccagtgctgcccctattgtggagtccccacaggagatgtctccaatggtacattaaggcatggtcccctttcctgacaatgcttggtactcagatggattgagcccaggtatctctgtgtatggatagtagtagctgcacaaccacagatggatagtatctggtttgagatgggaatgcaacagagcagtcaatgagcagaactccaagctgcatggctgctttgtacctatgagccaccacctatagttctctatgcagacaatct-ggcagtactta--agtcttacaattt-ggcttgcccaaaaggcctgagataattggtatataatttaaaaatccttatggggagctggtgtgtggaaagacatttggaaaagtctacaggaacccactatggacctaattgcttcagcacactggtcagattcacttgccaccaacatggaggcagataacctagcaaaaattagtatactg-agctagttgattaggtacataccatagagggcacctctgtgcatgagtgggctggcaaatagcaaacagatcaagactagctctctgctatgcacatttagtgg--tggg-agtaacaaactgcttcatgtgtttc-cacctgtacgtctgccacatccctcatacacctggacatagacataagatagctgcctctgtgagagact----ggtagactacatcagacccctgccagtaatctcaggacaaacgtatgcactaac--gt-gtatacactg-ccatggtattgtt
i aotNan1.NW_018496904v1   N 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464    5 +  18854210 I

a score=3124726.000000
s hg38.chr6_GL000254v2_alt  1362339 327 +   4827813 gcaagctttcccttgtaagagcaaaccaaacagccaccatcaggggcttggagcaactcagtgtcatgtaaggataccctccacatattgatagcaatcgaggcatgcatttcaccagacacggtgtccaagactggatgcatgaaagggacataga-ctgggtatttcacttactgtata--ct--cccccaagcaacagggttgattgaaagg-aaaaatggta-ttttgaaggcacagttttgagcactctcaaaatccaatatctttcatagttagacaaaga-ttttgcctcaagccattagaaaccttaatttagttgagac-aaatatg
s panTro5.chr6             30235730 323 + 175400573 gcaagctttcccttgtaagagcaaaccaaacagccaccatcaggggcttggagcaactcagtgtcatgtatggataccctccacatattgatagcaatcgaggcatgcatttcaccagacatggtgtccaagactggatgcatgaaagggacataga-ttgggtatttcacttactgtata--ct--cccccaagcaacagggttgattgaaagg-aaaaatggta-ttttgaaggcacagttttgagcactctcaaaatccaatatctttcatag----acaaaga-ttttgcctcaagccattagaaaccttaatttagttgagac-aaatatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30466271 323 + 173848474 gcaagctttcccttgtaagagcaaaccaaacagccaccatcaggggcttggagcaactcagtgtcatgtatggataccctccacatattgatagcaatcgaggcatgcatttcaccagacatggtgtccaagactggatgcatgaaagggacataga-ttgggtatttcacttactgtata--ct--cccccaagcaacagggttgattgaaagg-aaaaatggta-ttttgaaggcacagttttgagcactctcaaaatccaatatctttcacag----acaaaga-ttttgcctcaagccattagaaaccttaatttagttgagac-aaatatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     172761 329 +   2037526 gcaagctttcccttgtaagagcaaaccaaacagccaccatcaggggcttggagcaactcagtgtcatgtatggataccctccacatattgatagcaatcgaggcatgcatttcaccagacatggtgtccaagactggatgcatgaaagggacatagatttgggtatttcacttactgtata--ct--cccccaagcaacagggttgattgaaagg-aaaaatggta-ttttgaaggcacagttttgagcactctcaaaatccaatatctttcatagttagacaaaga-tttggcctcaagccattagaaaccttaacttagttgagacaaaatatg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74842413 327 + 122973662 gcaagccttcccttgtaagagcaaaccaaacagccaccatcaggggcttggagcaactcagtgtcatgtatgggtaccctccacatattgatagcaatcgagccatgcatttcaccagacatgatgtccaagactggatgcatgaaaaggacataga-ttgggtatttcacttactgtata--ct--cccctaagcaacagggttgatcgaaagg-aaaaatggta-ttttgaaggcacagttttgagcactctcaaaatccagtatctttcatagttagacaaagg-ttttgcctcaagccattagaaaccttgatttggttgagac-aaatatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30698879 329 + 172585720 gcaagccttcccttgtaagagcaaaccaagcagccaccgtcaggggcttggagcaactccgtgtcatatatggataccctccacactatgatagcaaccaaggtacgcatttcaccagacctggtgtccaagactggatgcatgaaaaggacacaga-ttggatatttcacttactgtata--ccaccccccacgcaacagggttgattgaaagg-aaaaatggta-ttttgaaggcacagttttgagcactctcaaaatccaatatcttgcatggttagacaaagg-ttttgcctcaagccattagaaaccttaatttggttgagac-aaacatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29998463 329 - 170955103 gcaagccttcccttgtaagagcaaaccaagcagccaccgtcaggggcttggagcaactccgtgtcatatatggataccctccacactttgatagcaaccaaggcatgcatttcaccagacctggtgtccaagactggatgcatgaaaaggacacaga-ttggatatttcacttactgtata--ccacccaccatgcaacagggttgattgaaagg-aaaaatggta-ttttgaaggcacagttttgagcactctcaaaatccaatatctcgcatagttagacaaagg-ttttgcctcaagccattagaaaccttaatttggttgagac-aaatatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     225088 329 +   1495729 gcaagccttcccttgtaagagcaaaccaagcagccaccatcaggggcttggagcaactccatgtcatgtatggataccctccacactttgatagcaaccaaggcatgcatttcaccagacctggtgtccaagactggatgcatgaaaaggacacaga-ttggatatttcacttactgtata--ccacccaccatgcaacgggtttgtttgaaggg-aaaattgtct-ttttgaaggtacagttttgagcactctcaaaatcccatatcttgcatagttagacaaagg-ttttgcctccagccattagaaaccttaatttggttgagac-aaatatg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     347080 328 -    863181 gcaagcctttcctt-taagagcaaaccaagcagccaccattaggggcttggagaaactccatgtcatgtatggataccctccacactttgatagcaaccaaggcatgcatttcaccagacctggtgtccaagactggatgcatgaaaaggacacaga-ttggatatttcacttactgtata--ccaccccccacacaacagggttgattgaaagg-aaaaatggta-ttttgaaggcacagttttgagcactctcaaaatccaatatcttgcatagttagacaaaga-ttttgcctcaagccattagaaaccttaatttggttgagac-aaatatg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29397917 329 -  71996105 gcaagccttcccttgtaagagcaaaccaagcagccaccgtcaggggcttggagcaactccgtgtcatgtatggataccctccacactttgatagcaaccaacgcatgcatttcaccagacctggtgtccaagactggatgcatgaaaaggacacaca-ttggatatttcacttactgtatt--ctaccccccacgcaacaggactgattgaaagg-aaaaatggta-ttttgaaggcacagttttgagcactctcaaaatccaatatcttgcatagttagacaaagg-ttttgcctcaagccattagaaaccttaatttggttgagac-aaatatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     165849 330 -    735854 gcaagccttcctttgtaagagcaaaccaagcagccaccgtcaggggcttggagcaactccgtgtcatatatggataccctccacactttgatagcaaccaaggcatgcatttcaccagacctggtgtccaagactggatgcatgaaaaggacacaga-ttggatatttcacttactgtata--ccacccaccatgcaacagggttgattgaaagg-aaaaatggtatttttgaaggcacagttttgagcactctcaaaatccaatatcttgcatagttagacaaagg-ttttgcctcaagccattagaaaccttaatttggttgagac-aaatatg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     135602 329 -   1829203 gcaagccttcccttgtaagagcaaaccaagcagccaccatcaggggcttggagcaactccatgtcatatatggatacccttcacactttgatagcaaccaaggcatgcatttcaccagacctggtgtccaagactggatgcatgaaaaggacacaga-ttggatatttcacttactgtata--ccaccccccacgcaacagggttgattgaaagg-aaaaatggta-ttttgaaggcacagttttgagcactctcaaaatccaatatcttgcatagttagacaaagg-ttttgcctcaagccattagaaaccttaatttggttgagac-agatatg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30315515 327 + 171630274 gcaagtcttctcttataagagcaaacaaaacagccgccatcagggcctcagagcagctcagtgtcatgtatggataccctcaacacattgatagcaatcgagacatgcatttcaccagacatggtgttcaagactggatacatgaaaaggacgtaga-ctggatatttcacttactgtgta--ct--ccCCCAAGCAACACAG-TGATTAAAAGGAAAAAATGGTA-TTTTGAAGGCATGGTTTTAAGCACTCTGAAAATCCAGTATCTTGCATAGTTAGACAAAGG-TTTTGCCTCAGGCCATCAGAAACCTTAATTTGGTTGAGAC-AAATATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           140735 326 +    515838 gcaagccttctcttataagagcaaacaaaacagccaccatcaggggctcagagcaactcggtgtcatgtatggataccctcaacacattgatagcaaccgaggcatgcatttcaccagacatggtgctcaagactggatgcatgaaaaggatgtaga-ttggata-ttcacttgctgtgta--ct--cccccaagcaacacag-tgactgaaatgaaaaaatggta-ttttgaaggcacagttttgagcactCTGAAAATCCAATATTTTGCATAGTTAGACAAAGG-TTTTGCCTCAGGCCATTAAAAACCTTAATTTGGTTGAGAC-AAATATG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     778413 324 -   1771730 gcaagtcttctcttataagagcaaacaaaacagccaccatcaggggctcagagcaactcagtgtcatatatggataccctcaacacattgatagcaactgaggtatgcatttcaccagacgtgg---tcaacactagatgcatgaaaaggacgcaga-ctggatatttcacttactgtaca--ca--ccccgaagaaacacag-tgattgaaaggaaaaaatggta-tttttaaggcacagttttgagcactctgaaaatccaatatcttgcatagttagacaaagg-ttttgcctcaggccatcagaaaccttaatttggttgagac-aaatatg
i cebCap1.NW_016107755v1   N 0 T 96459
s aotNan1.NW_018496904v1     245459 330 -    383796 gcaagccttctcttataagagcaaaccaaacagccaccatcaggggctcagggcaactcagtgtcatgtatggataccctcaacacattgatagtaaccgaggcatgcatttcaccagacatggtgttcaagactggatgcatgaaaaggacataga-ttggatatttcacttactgtgtactct--cccccaagcaacacag-tgactgaaaggaaaaaatggta-ttttgaaggcacagttttgagcactctgaaaatctaatatcttgcatagttagacaaaggtttttgtctcaggccattagaaaccttaatttggttgagac-aaatatg
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I

a score=25026810.000000
s hg38.chr6_GL000254v2_alt  1362666 2617 +   4827813 gtgctggcaccacaccaatgactcaggaccaccacagagatggatccattaaccataatagt-aaagaaagtccaaccagatgcatctctgacctgagcagataaaaggccaatggcaaaggttatttagaactcctcaagatcttgagcca-gggaggagacacttgaat--gggggttggactagcaacttcccctatgttggatagagcatttctttccagacagcaaggaattccctaccaactaaagtggtctccattgatcctgctgaagtctgggccaaaacactccacataccaataaactggaacacagtcccttttaagaagcaccctggctggccatttgacatggtcctttgctgcccctgtaa-ccttacacataataccagcgcctttgcccctcaggcaacatgtttggtgtgtactcccagcccacaatcctatgttcctaatcaacagagatggagctac--cagtaattctgtttaatggggaagaactgccccaccaaatacctactaaacattttt-aattccacccatagtcttctgtt-cctattgttgtt-ctgctctatacctcttggtttggttcctgaat-aaacatggtaaagggca-tttttaattctgt-gtcttacacctggca-tacatatcatcgcctgttgt---ttgtgttgttgc-tgtggcccctgcttaacaagtagaaaacaaattgataaaatgtgtcactcacaccatcaaaatgtcacccacagccctctctgaaggctcagggactatggg-ggaaatgtgagtccatgagattgtaagagctggattagaaggctggGAtgtggagagaaaagtgactccctcttggatgctaattctctatgctgacttct--gattagccccagtcccaggactgactcc-tgattcccactttatttaccatccctattgtaagaacatgtcaaccttgatgttat---acaaattctaggctatgacacattagcattcttacctgttctggacagtagtagcctttgtcttgcacagagc-atgtatactcttcccctgtgg----tata--taagccc------tgggtgtggg--ggtaataa----gtgcagaaaccta-----cctgtcttcctgcc--atccaagac--cacgcttctgtctg-taagttcccc---aataaaacactcttta-ctgacaa-ctagatttgtctgt-cttgttccttggtttattggctcctttggcattt-ggggggcactttgcat-agat-------------------ggccctttcatggaacaGAGGGTCTGTGTGGGGCTGGGAGCCCAAGTCAGCACTT-GCAGTCAGAGCCTAGAACATGTGCTGAG-GAGAC------------------AGAGC------------TAGACCTGTTAGCAGAGACAGACCTGTTAGCGGAGTGGATAGCTGGGCCAGCAGGTCTGAAGTAACGCTATGGAAGAGCAGGCCAGTAACAG--CTGAAGAGCTTCAGAAACTCCCACTTCTAACAAGGTCACTTCCTCTAAGAGGGACTACTG-TTGTATCATAGTACACAGCTGTCTCTGCCTGGCTGTC-CTAGTAAATATGCAGCA-TTTGGGGGCATCCACACTAC-TGGAACAGTAGCCATGAGAAGAGTCCATTGTGCCAGCTTAATTGCACCCAACTG-TACAAT-GAGAACATGGGGATCAG--TGTGTTCTGC-TACTTCTCTGCTTAGCATTCC-TGATATACCTGCTTTACATA----------GGCACCATGTGG-CACCGTGG-TGTG--TGCCTGTGCCACTTTGAATCACATTTGGGTATCTATTGGAAGGCTTCTTCGGGACTGTTGTGACACCAACTACACTATGGACTGATCCCTGTCAGAA-GGTAACAAAGGGGCAAGGGACAGCATTTCCAGTCT-AAGCCCTGGAATGTGCGTGGCATCA-AACTG-TTTTGCA-TTTGTGAGCAGGAA-TAC-AACTGCTGGACAACAGATATTCCATCAGCCAACAGAAACTGTGACTGGCTTTAAAGAAAATGGGCTTCCCTTGGTCTTGGGAACACAAGACTCAGCAGTATAGAAAC--AGAAATGGTTGCAGGTGGAGGAAGCACTTTCGCCGGAGTCAGGAAAGCATGAATAACACAAAATCTTCAGCTTTTCCTCCCTTCTCTCTCCTGAGCTTTCTGCACCTCTGCTGTAGCAGTGATGGCAGCAGTGTGGAGAACACAGCCTCAGGGAACAACCAAGGTCCAGGATCACTAGCAAAGGTTATGAGAAACTATGACTTCCTTTAGAAAAAAA----------AA-----------------AAA--GGGAAA-TGAGAGTGCCCAAGGTCTTAGGAGAGGGCTGGTGCAGGCCTGGGGCGTAGTAAATTCTTTAGCTTGTCTAGATTCACCATGCCAAGTGGGGAGGTTGCTTGGGTCAGACTATATT--AAAGGACAGCATCTCCACCCTCCCCTAGAGGTCTCAGAATGTCCACTGACTGTGGCTTTAGTGGTCCTTGAACAGAAATTTGGTAACATGAAGAGTAGCAGATGCTGGCATGGTAAGATTACAAAT-GTGTATCAGAAGAATTATTTTGTGGGTAacag-aaaaaacaacatataaagaaacaagttaataccat-gagaatgtcattagcc-aaactcagaatgtggatcattctacaggacaagtaacctggcttttttggggaaac-agaagcatagg
s panTro5.chr6             30236053 2619 + 175400573 gtgttggcaccacaccaatgactcaggaccaccacagagatggatccattaaccatagtagt-aaagaaagtccaaccagatgcatctctgacctgagcagataaaaggccaatggcaaaggttatttagaactcctcaagatcttgagcca-gggaggagacacttgaat--gggggttggactagcaacttcccctatgttggatagagcatttctttccagacagcaaggaataccctaccaactaaagtggtctccattgatcctgctgaagtctgggccaaaacactccacgtaccaataaactggaacacagccccttttaagaagcaccctggctggccatttgacatggtcctttgctgcccctgtaa-ccttacacaaaataccagcgcctttgcccctcaggcaacatgtttggtgtgtactcccagcccacaatcctatgttcctaatcaacagagatggagctac--cagtcattctgtttaatggggaagaactgccccaccaaatacctattaaacattttt-aattccacccatagtcttctgtt-cctattgctgtt-ctgctctatatctcttggtttggttcctgaat-aaacatggtaaagggca-tttttaattctgt-gtcttacacctggca-tacatatcatcgcctgttgt---ttgtgttgttgc-tgtggcccctgcttaacaagtagaaaacaaattgataaaatgtgtcactcacaccatcaaaatgtcacccacagccccctctgaaggctcagggactatggg-ggaaatgtgagtccatgagattgtaagagctggattagagggctggGAtgtggagagaaaagtgactccctcttggatgctaattctctttgctgacttct--gattagccccagtcccaggactgactcc-tgattcctactttatttaccatccctattgtaagaacatgtcaaccttgatgttat---acaaattctaggctatgacacattagcattcttacctgttctggaaagtagtagcctttgtcttgcacagagc-atgtatactctttccctgtgg----tata--taagccc------tgggtgtggg--ggtaataa----gtgcagaaaccta-----cctgtcttgctgcc--atccaagac--cacgcttctgtctg-taagttcccc---aataaaacactcttta-ctgacaaactagatttgtctgt-cttgttccttggtttattggctcctttggcattt-ggggggcactttgcat-agat-------------------ggccctttcatggaacaGAGGGTCTGTGTGGGGCTGGGAGCCCAAGTCAGCACTT-GCAGTCAGAGCCTAGAACATGTGCTGAG-GAGAC------------------AGAGC------------TAGACCTGTTAGCAGAGACAGACCTGTTAGTGGAGTGGATAGCTGGGCCAGCAGGTCTGAAGTAACGCTATGGAAGAGCAGGCCAGTAACAG--CTGAAGAGCTTCAGAAACTCCCACTTCTAACAAGGTCACTTCCTCTAAGAGGGACTACTG-TTGTATCATAGTACACAGCTGTCTCTGCCTGGCTGTC-CTAGTAAATATGCAGCA-TTTGGGGGCATCCACACTAC-TGGAACAGTAGCCATGAGAAGAGTCCATTGTGCCAGCTTAATTGCACCCAACTG-TACAAT-GAGAACATGGGGATCAG--TGTGTTCTGC-TACTTCTCTGCTTAGCATTCC-TGATATACCTGCTTTACATA----------GGCACCATGTGG-CACCGTGG-TGTG--TGCCTGTGCCGCTTTGAATCACATTTGGGTATCTATTGGAAGGCTTCTTTGGGACTGTTGTGACACCAACTACACTATGGACTGATCCCTGTCAGAA-GGTAACAAAGGGGCAAGGGACAGCATTTCCAGTCT-AAGCCCTGGAATGTGCGTGGCATCA-AACTG-TTTTGCA-TTTGTGAGCAGGAA-TAC-AACTGCTGGACAACAGATATTCCATCAGCCAACAGAAACTGTGACTGGCTTTAAAGAAAATGGGCTTCCCTTGGTCTTGGGAACACAAGACTCAGCAGTATAGAAAC--AGAAATGGTTGCAGGTGGAGGAAGCACTTTCACCGGAGTCAGGAAAGCATGAATAACACAAAATCTTCAGCTTTTCCTCCCTTCTCTCTCCTGAGCTTTCTGCACCTCTGCTGTAGC-GTGATGGCAGCAGTGTGGAGAACACAGCCTCAGGGAACAACCAAGGTCCAGGATCACTAGCAAAGGTTATGAGAAACTATGACTTCCTTTAGAAAAAAA----------AA-----------------AAAAAGGGAAA-TGAGAGTGCCCAAGGTCTTAGGAGAGGGCTGGTGCAGGCCTGGGGCATAGTAAATTCTTTAGCTTGTCTAGATTCACCATGCCAAGTGCGGAGGTTGCTTGGGTCAGACTATATT--AAAGGACAGCATCTCCACCCTCCCCTAGAGGTCTCAGAATGTCCACTGACTGTGGCTTTAGTGGTCCTTGAACAGAAATTTGGTAACATGAAGAGTAGCAGATGCTGGCATGGTAAGATTACAAAT-GTGTATCAGAAGAATTATTTTGTGGGTAacag-aaaaaacaacatataaagaaacaagttaataccat-gagaatgtcattagcc-aaactcagaatgtggatcattctacaggacaagtaatctggcttttttggggaaac-agaagcatagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30466594 2617 + 173848474 gtgttggcaccacaccaatgactcaggaccaccacagagatggatccattaaccatagtagt-aaagaaagtccaaccagatgcatctctgacctgagcagataaaaggccaatggcaaaggttatttagaactcctcaagatcttgagcca-gggaggagacacttgaat--gggggttggactagcaacttcccctatgttggatagagcatttctttccagacagcaaggaataccctaccaactaaagtggtctccattgatcctgctgaagtctgggccaaaacactccacgtaccaataaactggaacacagccccttttaagaagcaccctggctggccatttgacatggtcctttgctgcccctgtaa-ccttacacaaaataccagcgcctttgcccctcaggcaacatgtttggtgtgtactcccagcccacaatcctatgttcctaatcaacagagatggagctac--cagtcattctgtttaatggggaagaactgccccaccaaatacctattaaacattttt-aattccacccatagtcttctgtt-cctattgctgtt-ctgctctatatctcttggtttggttcctgaat-aaacatggtaaagggca-tttttaattctgt-gtcttacacctggca-tacatatcatcgcctgttgt---ttgtgttgttgc-tgtggcccctgcttaacaagtagaaaacaaattgataaaatgtgtcactcacaccatcaaaatgtcacccacagccccctctgaaggctcagggactatggg-ggaaatgtgagtccatgagattgtaagagctggattagagggctggGAtgtggagagaaaagtgactccctcttggatgctaattctctatgctgacttct--gattagccccagtcccaggactgactcc-tgattcctactttatttaccatccctattgtaagaacatgtcaaccttgatgttat---acaaattctaggctatgacacattagcattcttacctgttctggacagtagtagcctttgtcttgcacagagc-atgtatactctttccctgtgg----tata--taagccc------tgggtgtggg--ggtaataa----gtgcagaaaccta-----cctgtcttgctgcc--atccaagac--cacgcttctgtctg-ttagttcccc---aataaaacactcttta-ctgacaaactagatttgtctgt-cttgttccttggtttattggctcctttggcattt-ggggggcactttgcat-agat-------------------ggccctttcatggaacaGAGGGTCTGTGTGGGGCTGGGAGCCCAAGTCAGCACTT-GCAGTCAGAGCCTAGAACATGTGCTGAG-GAGAC------------------AGAGC------------TAGACCTGTTAGCAGAGACAGACCTGTTAGTGGAGTGGATAGCTGGGCCAGCAGGTCTGAAGTAACGCTATGGAAGAGCAGGCCAGTAACAG--CTGAAGAGCTTCAGAAACTCCCACTTCTAACAAGGTCACTTCCTCTAAGAGGGACTACTG-TTGTATCATAGTACACAGCTGTCTCTGCCTGGCTGTC-CTAGTAAATATGCAGCA-TTTGGGGGCATCCACACTAC-TGGAACAGTAGCCATGAGAAGAGTCCATTGTGCCAGCTTAATTGCACCCAACTG-TACAAT-GAGAACATGGGGATCAG--TGTGTTCTGC-TACTTCTCTGCTTAGCATTCC-TGATATACCTGCTTTACATA----------GGCACCATGTGG-CACCGTGG-TGTG--TGCCTGTGCCGCTTTGAATCACATTTGGGTATCTATTGGAAGGCTTCTTTGGGACTGTTGTGACACCAACTACACTATGGACTGATCCCTGTCAGAA-GGTAACAAAGGGGCAAGGGACAGCATTTCCAGTCT-AAGCCCTGGAATGTGCGTGGCATCA-AACTG-TTTTGCA-TTTGTGAGCAGGAA-TAC-AACTGCTGGACAACAGATATTCCATCAGCCAACAGAAACTGTGACTGGCTTTAAAGAAAATGGGCTTCCCTTGGTCTTGGGAACACAAGACTCAGCAGTATAGAAAC--AGAAATGGTTGCAGGTGGAGGAAGCACTTTCACCGGAGTCAGGAAAGCATGAATAACACAAAATCTTCAGCTTTTCCTCCCTTCTCTCTCCTGAGCTTTCTGCACCTCTGCTGTAGC-GTGATGGCAGCAGTGTGGAGAACACAGCCTCAGGGAACAACCAAGGTCTAGGATCACTAGCAAAGGTTATGAGAAACTATGACTTCCTTTAGAAAAAAA----------AA-----------------AAA--GGGAAA-TGAGAGTGCCCAAGGTCTTAGGAGAGGGCTGGTGCAGGCCTGGGGCATAGTAAATTCTTTAGCTTGTCTAGATTCACCATGCCAAGTGCAGAGGTTGCTTGGGTCAGACTATATT--AAAGGACAGCATCTCCACCCTCCCCTAGAGGTCTCAGAATGTCCACTGACTGTGGCTTTAGTGGTCCTTGAACAGAAATTTGGTAACATGAAGAGTAGCAGATGCTGGCATGGTAAGATTACAAAT-GTGTATCAGAAGAATTATTTTGTGGGTAacag-aaaaaacaacatataaagaaacaagttaataccat-gagaatgtcattagcc-aaactcagaatgtggatcattctacaggacaagtaatctggcttttttggggaaac-agaagcatagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     173090 2684 +   2037526 gtgctggcaccacaccaatgactcaggaccaccacagagatggatccattaaccatagtagtaaaagaaagtccaaccagatgcatctctgacctgagcagataaaaggccaatgg-aaaggttatttagaactcctcaagatcttgagcca--ggaggagacacttgaatgggggggttggactagcaacttcccctatgttggatagagcatttctttccagacagcaaggaattccctaccaactaaagtggtctccattgatcctgctgaagtctgggccaaaacactccacataccaataaactggaacacagccccttttaagaagcaccctggctggccatttgacatggtcctttgctgcccctgtaacccttacacataataccagcgtctttgcccctcaagcaacatgtttggtgtgtactcccagcccacaatcctatgttcctaatcaacagagatggagctac--cagtcattctgtttaatggggaagaactgccccaccaaatacttactaaacattttt-aattccacccatagtcttctgttccctattgttgttcctgctctatacctcttggtttggttcctgaataaaacatggtaaagggca-tttttaattctgtggtcttacacctggcattacatatcatcatctgttgtttgttgtgttgttgcttgtggcccctgcttaacaagtagaaaacaaattgataaaatgtgtcactcgcaccatcaaaatgtcacccacagccccctctgaaggctcagggactat-gg-ggaaatgtgagtccatgagattgtaagagctggattagagggctggGAtgtggagagaaaagtgactccctcttggatgctaattctctatgctgacttct--gattagccccagtcccaggactgactccttgattcctactttatttaccatccctattgtaagaacatgtcaaccttgatgttat---acaaattctaggctatgacacattagcattcttacctgttctggacagtagtagcctttgtcttgcacagagcaatgtatactctttccctgtcggtaatataattaggccctacctgtggatgtggggtggtaataataacgtgcagaaacctatacctcgtgtcttgctgcccaatccaagaccacacgcttctgtctgttaagttccccaataataaaacactctttatctgacaaactagatttgtctgtccttgttccttggtttattggctcctttggcattt-ggggggcactttgcataagat-------------------ggtcctttcatggaacaGAGGGTCTGTGTGGGGCTGGGAGCCACAGTCAGCGCTTGGCAGTCAGCGCCTAGAACATGTGCTGAGAGACAA------------------AGAGC------------TAGACCTGTTAGCAGAGACAGACCTGTTACT-GAGTGGATAGCTGGGCCAGCAGGTCTGAAGTAACGCTATGGAAGAGCAGGCCAGTAACAG--GTGAAGAGCTTCAGAAACTCCCACTTCTAACAAGGTCACTTCCTCTAAGAGGGACTACTGTTTGTATCATAGTACACAGCTGTCTCTGCCTGGCTGTTATTAGTAAATATGCAGCATTTTGGGGGCATCCACACTACTTGGAACAGTAGCCATGAGAAGAGTCCATTGTGCCAGCTTAATTGCACCCAACTGTTACAATGGAGAACATGGGGATCAGGTTGTGTTCTGCTTACTTCTCTGCTTAGCATTCCTTGATATACCTGCTTTACATA----------GGCACCATGTGGCCACCGTGGCTGTG--TGCCTGTGCCGCTTTGAATCACATTTGGGTATCTATTGGAAGGCTTCTTCGGGACTCCTGTGACACCAACTACACTATGGACTGATCCCTGTCAGAATGGTAACAAAGGGGCAAGGGA-AGCATTTCCAGTCTAAAGCCCTGGAATGTGCGTGGCATCACAACTGTTTTTGCATTTTGTGAGCAGGAATTACAAACTGCTGGACAA---AGATTCCATCAGCCAACAGAAACTGTGACTGGCTTTAAAGAAAATGGGCTTCCCTTGGTCTTGGGAACACAAGACTCAACAGTATAGAAAC--AGAAATGGTTGCAGGTGGAGGAAGCACTTTCACCGGAGTCAGGAAAGCATGAATAACACAAAATCTTCAGCTTTTCCTCCCTTCTCTCTCCTGAGCTTTCTGCACCTCTGCTGTAGCAGTGATGGCAGCAGTGTGGAGAACACAGCCTCAGGGAACAACCAAGGTCCAGGATCACTAGCAAAGGTTATGAGAAACTATGACTTCCTTTAGAAAAAAA----------AA-----------------AAA--GGGAAA-TGAGAGTGCCCAAGGTCTTAGGAGAGGGCTGGTGCAGGCCTGGGGCGTAGTAAATTCTTTAGCTTGTCTAGATTCACCATGCCAAGTGGGGAGGTTGCTTGGGTCAGACTATATT--AAAGGACAGCATCTCCACCCTCCCCTAGAGGTCTCAGAATGTCCACTGACTGTGGCTTTAGTGGTCCTTGAACAGAAATTTGGTAACATGAAGAGTAGCAGATGCTGGCATGATAAGATTACAAATGGTGTATCAGAAGAATTATTTTGTGGGTAACAGAAAAAAACAACATataaagaaacaagttaataccatggagaatgtcattagcc-aaactcagaatgtggatcattctacaggacaagtaacctggcttttttggggaaacaagaagcatagg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74842740 2616 + 122973662 gtgctggcaccacaccaatgactcaggaccaccacagagaaggatccattaaccatagtagt-aaagaaagtccaaccagattcatctctgacctgagcagataaaaggccaatggcaaaggttatttaggattcttcaagatcttaagcca-gggaggagacacttgaat--gggggttggactagcaacttcccctatgttggatagagcatttctttccagacagcaaggaattccctaccaactaaagtggtttccatcgatcctgttgaagtctgggccaaaacactccacataccaataaactggaacacagccccttttaagaagcaccctggccggccatttgacatggtcccttgctgcccctgtaa-ccttacagataataccagcgcctttgcccctcaggcaacatgtttggtatgtactcccagcccacagtcctatg-tcctaaccaacagagatggagctac--cagtcattctgtttaacgacgaagaactgccccaccaaatacctgctaaacattttt-aattccactcatagtcttctgtt-cctattgctgtt-ctgctctatacctcttggtttggttcctgaat-aaatgtggtaaagggca-tttttaattctgt-gtcttacacatggca-tacatatcattgcctgttgt---ttgt-ttg-tgc-tgtggcccctgcttaacaagtagaaaacaaactgataaaatgcgtcactcacaccatcaaaatgtcacccacagccccctctgaaggctcagggactatggg-taaaatgtgagtccatgagattgtaagagctggattagagggctggGACgtggagagaaaagtgactccctcttggatgctaattgtctatgctgacttct--gattagccccagtcccaggactgactcc-tgattcctactttatttaccatccctattgtaagaacatgtcaaccttgatgttat---acaaattctaggctatgacacattagcattcttgcctgttctggacagtagtagcctttgtcttgcacagagc-atgtatactctttccctgtgg----tata--taagccc------tgagtgtggg--ggtaataa----gtgcagaaaccta-----cctgtcttgctgcc--atccaagac--catacttctgtctg-taagttcccc---aataaaacacccttta-ccgacagactagatttgtctgt-cttgttccttggcttattggctcctttggcattt-ggggggcactttgcat-agat-------------------ggccctttcatggaacaGAGGGTCTGTGTGGGGCTGGGAGCCCAAGTCAGCACTT-GCAGTCAGAGCCTAGAACATTTGCTGAG-GAGAC------------------AGAGC------------TATACCTGTTAGCAGAGACAGACCTGTTAGCGGAGTGGATAGCTGGGCCAGCAGGTCTGAAGTGACGCTGTGGAAGAGCAGGCCAGAAACAG--CTGAAGAGCTTCAGAAACTCCCACTTCTAACAAGGTCACTTCCTCTAAGAGGGACGACTG-TTGTATCATAGTACACAGCTGTCTCTGCCTGGCTGTC-CTAGTAAATATGCAGCA-TTTGGGGGCATCCACACTAC-TGGAACAGTAGCCATGAGAAGAGTCCATTGTGCCAGCTTGATTGCACCCAACTG-TACAAT-GAGAACGTGGGGATCAG--TGTGTTCTGC-TACTTCTCTGCTTAGCATTCC-TGATATACTTGCTTTACATA----------GGCACCATGTGG-CACCGTGG-TGTG--TGCCTGTGCCGCTTTGAATCACATTTGGGTATCTATTGGAAGGCTTCTTCGGGACTGTTGTGACACCAACTACACTATGGACTGATCCCTGTCAGAA-GGTAACAAAGGAGCAAGGGACAGCATTTCCAGCCT-AAGCCCTGGAATGTGTGCAGCATCA-AACTG-TTTTGCA-TTTGTGAGCAGGAA-CAC-AACTGCTGGAAAACAGATATTCCATCAGCCAACAGAAATTGTGACTGGCTTTAAAGAAAATGGGCTTCCCTTGGTCTTGGGAACACAAGACTCAGCAGTATAGAAAC--AGAAATGGTTGCAGGTGGAGGAAGCACTTTTACCGGAGTCAGGAAAGCATGACTAACACAAAATCTTCAGCTTTTCTTCCCTTCTCTCTCCTGAGCTCTCTGCACCTCTGCTCTAGCAGTGATGGCAGCAGTGTGGAGAACACAGCCTCAGGGAACAACCAAGGTCCAGGATCACTAGCAAAGGTTATGAGAAACTATGACTTCCTTTAGAAAAAAA----------AA-----------------ACAAAGGGAAA-TGAGAGTGCCCAAGGTCTTAGGAGAGGGCTGGTGCAGGCTTGGGGTATAGTAAATTCTTTAGCTTGTCTAGATTCACCATGCCAAGTGGGGAGGTTGCTTGGGTCAGAATATATT--AAAGGACAGCATCTCCACCCTCCCCTAGAGGTCTCAGAATGTCCACTGACTGTAGCTTTAGTGGTCCTTGAACAGAAATTTGGTAACATGAAGAGTAGCAGATGCTGGCATGGTAAGATTACAAAT-GTGTATCAGAAGAATTATTTTGTTGGTAacag-aaaatacaacatataaagaaacaagttaataccat-gagaatg-cattagcc-aaactcagaatgtggatcattctacaggataagtaacctggctttttGGgggaaac-aaaagcatagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30699208 2603 + 172585720 gttctggtaccacatcaatgactcaggactagcatagaggagggtccattaaccatagtagt-aaagaaagtccaaccagatgcatctct-acctgagcagataaaaggccaatggcaaagcttatttaggactccccaagatcttgagccaggggaggagacacctgaat--gggggttggactagcaacttcccctatgttggacagagcatttctttccagacagcaaggaattccctaccaactaaagtggtctccatccatcctgttaaagtctgggccaaaacactccacatacaaataaactggaacacagc---------------ccccggctggccatttgacatggtcctttgctgcccctgtaa-ccctacagataataccagcgcttttgcccctcaggcaacatgtttggtatacactcccagcccataatcctatg-tcctaaccatcagagatggagctac--cagtcattctgtgtaatagggaaaaactgcctcaccaagtacctgctaaacattttt-aattccacccatagtcttctgtt-cctattgctgtt-ttgctctacacctcttggtttggttcctgaat-aaacatggcaaagggca-tttttaattctgt-gtcttacacttggca-tacacatcatcgcctgttgt---ttgtgttgccgc-tgtggcccctgcttaacaagtagaaaacaaattgataaaatgtgtcactcacaccataaaaatgtcacccacagcctcctccaaaggatcagggaccagggg-ggaaatgtgagtccatgaaattgtaagagctgg-ttagacgggtggGAtgtggagagaaaagtgactccctcttggatgctaattctccatgctgacttct--gattagccccagtcccaggactgactcc-tgattcctactttatttaccgtccctattgtaagaacatttcaactttgatgttatcacacaaattctaggctattacacattagcattcttgcctgttctggac---agtagcctttgtcttgcacagagc-atgtatactctttctgtgtgg----tata--taagccc------tgagtgtggg--ggtaataa----gtgcagacacctg-----cctgtcttgctgcc--atccaagat--catgcttctgtctg-taagttcccc---aataaaacacccttta-ccgacaaactagatttgtctgt-cttgttccttggtttattggctcctttggcattt-ggggggcactttgcat-agat-------------------ggccctttcatggaacaGAGGGTCTGTGTGGGGCTGGGAGCCCAAGTCAGCTCTT-GCAGTCAGAGCCTAGAACATCTGCTGAG-GAGAC------------------AGAGCTAGAGTTAGAGCTAGACCTGTTAGCAGAGACAGACCTGTTAGCGGAGTGGATAGCTGGGCCAGCAGGTCTGAAGTGACGCCATGGAAGAGCAGGCCAGTAACAG--CTGAAGAGCTTCAGAAACTCCCACTTCTAACAAGGTCACTTCCTCTAAGAGGGACTACTG-TCGTATCATAGTACACAGCTGTCTCTACCTGGCT----------AATATGCAGCA-TTTGGGGGCATCCACACTAC-TGGAACAGTAGCCACGGTAAGAGTCCACTGTGCCAGCTTAATTGCACCCAACTG-TACAAT-GAGAACATGGGGATCAG--TGTGTTCTGC-TACTTCTCTGCTTAGCATTCC-TGATACACCTGCTTTACATA----------GGCACCGTGTGG-CACCGTGG-TGTG--TGCCTATGCTGC-TTGAATCACATTTGGGTATCTATTGGAAGGCTTCTTCAGTACTGTTGTGACACCAACTACACTATGGACTGATCCCTGTCAGAA-GGTAACAAAGGGGCAAGGGACAGCATTTCCAGCCT-AAGCCCTGGAATGTGTGTGGCATCA-AACTG-TTTTGCA-TTTGTGAGCAGGAA-CAC-AAATGCTGAACAACAGATATTCCATCAGCAAACAGAAATTGTGACTGACTTTAAAGAAAATGGGCTTCCCTTGGTCTTGGGAACACAAGACTCAGCAGCATAGAAAC--AGAAATGGTTGCAGGTGGAGGAAGCACTTTTACCAGAGTCAGGAAAGCATGAATAACACAAAATCTTCAGCTTTTCCTCCCTTCTCTCTCCTGAGCTCTCTGCACCTCTGCTCTAGCAGTGATAGCAGCAGTGTGGAGAACACAGCCTCAGGGAACAACCAAAGTCCAGGATCCCTAGCAAAGGTTATGAGAAACTATGACTTCCTTTAGAAAAAGA----------AG-----------------GGG--GGGAAA-TGAGAGTGCGCAAGATCTTAGGAGAGGGCTGGTGCAGGCCTGGGGTGTAGTAAGTTCTGTAGCTTGTCTAGATTCACCATGCCAAGTGGGGAGGTTTCTTGGGTCAGAATATATT--ACAGGACAGCATCTCCACCCTCCCCTAGAGGTCTCAGAATGTCCACTGACTGTAGCTTCCGTGGTCCTTGAACAGAAATTTGGTAACATGAAGAGTAGCAGATGCTGGCATGGTAAGATTACAAAT-GTGTATCAGAAGAATTATTTCGTGGATAacag-aaaatacaacatataaaggaatgagttaataccat-gagaatgccattagcc-aaattcaggatgtggatcattctacaggacaagtaacctggcttttttggggaaac-agaagcatagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             29998792 2598 - 170955103 gttctggcaccacatcaatgactcaggactagcatagaggagggtccattaaccatagtagt-aaagaaagtccaaccagatgcatctct-acccgagcagataaaaggccaatggcaaaggttatttaggattccccaagatcttgagacaggggaggagacacctgaat--gggggttggactagcaacttcccctatgttggacagagcatttctttccagacagcaaggaattccctaccaactaaagtggtctccatcgaccctgttaaagtctgggccaaaacactccacacacaaataaactggaacacagc---------------ccccagctggccatttcacatggtcctttgctgcccctgtaa-ccctacagataataccagcgcttttgcccctcaggcaacatgtttggtatacactcccagcccataatcctgtg-tcctaaccaacagagatggagctac--cagtcattctgtttaatggggaaaaactgcctcaccaagtacctgctaaacattttt-aattccacccatagtcttctgtt-cctattgctgtt-ttgctctacacctcttggtttggttcctgaat-aaatgtggcaaagggca-tttttaattctgt-gtcttacacctggca-tacacatcatcgcctgttgt---ttgtgttgctgc-tgtggcccctgcttaacaagtagaaaacaaattgataaaatgtgtcactcacaccatcaaaatgtcacccacagcctcctccgaaggatcagggaccagggg-ggaaatgtgagtccatgaaattgttagagctagattagacgggtggGAtgtggagagaaaagtgactccctcttggatgctaattctccatgctgacttct--gattagccccagtcccaggactgactcc-tgattcctactttatttaccgtccctattgtaagaacatttcaaccttaatgttatcacacaaattctaggctattacacattagcattcttgcctgttctggac---agtagcctttgtcttgcacagagc-atgtatactctttctgtgtgg----tata--taagccc------tgagtgtggg--ggtaataa----gtgcagacacctg-----cctgtcttgctgcc--atccaagat--catgcttctgtttg-taagttcccc---aatagaacacccttta-ccgacaaactagatttgtctgt-cttgttccttggtttattggctcctttggcattt-ggggggcactttgcat-agat-------------------ggccctttcatggaacaGAGGGTCTGTGTGGGGCTGGGAGCCCAAGTCAGCTCTT-GTGGTCAGAGCCTAGAACATCTGCTGAG-GAGAC------------------AGAGC------TAGAGCTAGACCTGTTAGCAGAGACAGACCTGTTAGCGGAGTGGATAGCTGGGCCAGCAGGTCTGAAGGGACGCCATGGAAGAGCAGGCCAGTAACAG--CTGAAGAGCTTCAGAAACTCCCACTTCTAACAAGGTCACTTCCTCTAAGAGGGACTACTG-TCGTATCATAGTACACAGCTGTCTCTGCCTGGCT----------AATATGCAGCA-TTTGGGGGCATCCACACTAC-TGGAACAGTAGCCACGGTAAGAGTCCACTGTGCCAGCTTAATTGCACCCAACTG-TACAAC-GAGAACATGGGGATCAG--TGTGTTCTGC-TACTTCTCTGCTTAGCATTCC-TGATACACCTGCTTTACATA----------GGCACCGTGTGG-CACCGTGG-TGTG--TGCCTATGCTGC-TTGAATCACATTTGGGTATCTATTGGAAGGCTTCTTCAGTACTGTTGTGACACCAACTACACTATGGACTGATCCCTGTCAGAA-GGTAACAAAGGGGCAAGGGACAGCATTTCCAGCCT-AAGCCCTGGAATGTGTGTGGCATCA-AACTG-TTTTGCA-TTTGTGAGCAGGAA-CAC-AAACGCTGAACAACAGATATTCCATCAGCAAACAGAAATTGTGACTGACTTTAAAGAAAATGGGCTTCCCTTGGTCTTGGGAACACAAGACTCAGCAGTATAGAAAC--AGAAATGGTTGCAGGTGGAAGAAGCACTTTTATCAGAGTCAGGAAAGCATGAATAACACAAAATCTTCAGCTTTTCCTCCCTTCTCTCTCCTGAGCTCTCTGCACCTCTGCTCTAGCAGTGATGGCAGCAGTGTGGAGAACACAGCCTCAGGGAACAACCAAAGTCCAGGATCACTAGCAAAGGTTATGAGAAACTATGACTTCCTTTAGAAAAAGA----------AG-----------------GGG--GGGAAA-TGAGAGTGCCCAAGATCTTAGGAGAGGGCTGGTGCAGGCCTGGGGTGTAGTAAGTTCTGTAGCTTGTCTAGATTCACCATGCCAAGTGGGGAGGTTTCTTGGGTCAGAATATATT--ACAGGACAGCATCTCCACCCTCCCCTAGAGGTCTCAGAATGTCCACTGACTGTGGCTTCAGTGGTCCTTGAACATAAATTTGGTAACATGAAGAGTAGCAGATGCTGGCATGGTAAGATTACAAAT-GTGTATCAGAAGAATTATTTCATGGGTAacag-aaaatacaacatataaaggaatgagttaataccac-gagaatgccattagcc-aaattcaggatgtggatcattctacaggacaagtaacctggcttttttggggaaac-agaagcatagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     225417 2610 +   1495729 gttctggtaccacaccaatgactcaggactagcatagaggagggtccattaaccatagtagt-aaagaaagtccaaccagatgcatctct-acctgagcagataaaaggccaatggcaaaggttatttaggactccccaagatcttgagccaggggaggagacacctgaat--gggggttggactagcaacttcccctatgttggacagagcatttctttccagacagcaaggaattccctaccaactaaagtggtctccatcgaccctgttaaagtctgtgccaaaacactccacatacaaataaactggaacacagc---------------ccccagctggccatttcacatggtcctttgctgcccctgtaa-ccctacagataataccagcgcttttgcccctcaggcaacatgtttggtatacactcccagcccataatcctgtg-tcctaaccaacagagatggagctat--cagtcattctgtttaatggggaaaaactgcctcaccaagtacctgctaaacattttt-aattccacccatagtcttctgtt-cctattgctgtt-ttgctctacacctcttggtttggttcctgaat-aaacgtggcaaagggca-tttttaattctgt-gtcttacacttggca-tacatatcatcgtctgttgt---ttgtgttgctgc-tgtggcccctgcttaacaagtagaaaacaaattgataaaatgtgtcactcacaccatcaaaatgtcacccacagcctcctctgaaggatcagggaccagggg-ggaaatgtgagtccatgaaattgtaagagctggattagacgggtggGAtgtggcgagaaaagtgactccctcttggatgctacttctccatgctgacttct--gattagccccagtcccaggactgactcc-tgattcctactttatttaccgtccctattgtaagaacatttcaactttgatgttatcacacaaattctaggctattacacattagctttcttgcctgttctggac---agtagcctttgtcttgcacagagc-atgtatactctttctgtgtgg----tata--taagccc------tgagtgtggg--ggtaataa----gtgcagacacctg-----cctgtcttgctgcc--atccaagat--catgcttctgtttg-taagttcccc---aatagaacacccttta-ccgacaaactagatttgtctgt-cttgttccttggtttattggctcctttggcattt-gggggtcactttgcat-agat-------------------ggccctttcatggaacaGAGGGTCTGTGTGGGGCTGGGAGCCCAAGTCAGCTCTT-GTGGTCAGAGCCTAGAACATCTGCTGAG-GAGAC------------------AGAGC------TAGAGCTAGACCTGTTAGCAGAGACAGACCTGTTAGCGGAGTTGATAGCTGGGCCAGCAGGTCTGAAGTGACGCCATGGAAGAGCAGGCCAGTAACAG--CTGAAGAGCTTCAGAAACTCCCACTTCTAACAAGGTCACTTCCTCTAAGAGGGACTACTG-TCGTATCATAGTACACAGCTGTCTCTGCCTGGCT----------AATATGTAGCA-TTTGGGGGCATCCACACTAC-TGGAACAGTAGCCACGGTAAGAGTCCACTGTGCCAGCTTAATTGCACCCAACTG-TACAAT-GAGAACATGGGGATCAG--TGTGTTCTGC-TACTTCTCTGCTTAGCATTCC-TGATACACCTGCTTTACATAggcaccgtgtggcaccgtgtgg-caccgtgG-TGTG--TGCCTATGCTGC-TTGAATCACATTTGGGTATCTACTGGAAGGCTTCTTCAGTACTGTTGTGACACCAACTACACTATGGACTGATCCCTGTCAGAA-GGTAACAGAGGGGCAAGGGACAGCATTTCCAGCCT-AAGCCCTGGAATGTGTGCGGCATCA-AACTG-TTTTGCA-TTTGTGAGCAGGAA-CAC-AAATGCTGAACAACAGATATTTCATCAGCAAACAGAAATTGTGACTGGCTTTAAAGAAAATGGGCTTCCCTTGGTCTTGGGAACACAAGACTCAGCAGTATAGAAAC--AGAAATGGTTGCAGGTGGAGGAAGCACTTTTACCAGAGTCAGGAAAGCATGTATCACACAAAATCTTCAGCTTTTCCTCCCTTCTCTCTCCTGAGCTCTCTGCACCTCTGCTCTAGCAGTGATGGCAGCAGTGTGAAGAACACAGCCTCAGGGAACAACCAAGGTCCAGGATCCCTAGCAAAGGTTATGAGAAACTATGACTTCCTTTAGAAAAAGA----------AG-----------------CGG--GGGAAA-TGAGAGTGTCCAAGATCTTAGGAGAGGGCTGATGCAGGCCTGGGGTGTAGTAAGTTCTGTAGCTTGTCTAGATTCACCATGCCAAGTGGGGAGGTTTCTTGGGTCAGAATATATTACACAGGACAGTATCTCCACCCTCCCCTAGAGGTCTCAGAATGTCCACTGACTGTGGCTTCAGTGGTCCTTGAACAGAAATTTGGTAACATGAAGAGTAGCAGATGCTGGCATGGTAAGATTACAAAT-GTGTATCAGAAGAATTATTTCGTGGGTAAAag-aaaatacagcatataaaggaatgagttaataccac-gagaatgccattagcc-aaattcaggatgtggatcattctacaggacaagtaacctggcttttttggggaaac-agaagcatggg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     347408 2615 -    863181 gttctggcaccacatcaatgactcaggactaccatagaggagggtccattaaccatagtagt-aaagaaagtccaaccagatccatctct-acccgagcggataaaaggccaatggcaaaggttatttaggattccccaagatcttgagacaggggaggagacacctgaat--gggggttggactagcaacttgccctatgttggacagagcatttctttccagacagcaaggaattccctaccaactaaagtggtctccatcgaccctgttaaagtctgggccaaaacactccacacacaaataaactggaacacagc---------------ccccagctggccatttcacatggt-ctttgctgcccctgtaa-ccctacagataataccagcacttttgcccctcaggcaacatgtttggtatacactcccagcccataatcctgtg-tcctaaccaacagagatggagctac--cagtcattctgtttaatgggggaaaagtgcctcaccaagtacctgctaaacattttt-aattccacccatagtcttctgtt-cctattgctgtt-ttgctctacacctcttggtttggttcctgaat-aaacgtggcaaagggca-tttttaattctgt-gtcttacacctggca-tacacatcatcgcctgttgt---ttgtgttgctgc-tgtggcccctgcttaacaagtagaaaacaaattgataaaatgtgtcactcacaccatcaaaatgtcacccacagcctcctctgaa-gatcagggaccagggg-ggaaatgtgagtccatgaaattgtaagagctgg-ttagacgagtggGAtgtggagagaaaagtgacccactcttggatgctaattctccatgctgacttct--gattagccccagtcccaggactgactcc-tgattcctactttatttaccgtccctattgtaagaacatttcaaccttgatgttatcacacaaattctaggctatttcacattagcattcttgcctgttctggac---agtagcctttgtcttgcacagagc-atgtatactctttctgtgtgg----tata--taagccc------tgagtgtggg--ggtaataa----gtgcagaaacctg-----cctgtcttgctgcc--atccaagat--catgcttctgtctg-taagttcccc---tatagaacacccttta-ccgacaaaccagatttgtctgt-cttgttccttggtttattggctcctttggcattt-agggggcactttgcat-agattttcatggaaATGAACAGAGGCCCTTTCATGGAACTGAGGGTCTGTGTGGGGCTGGGAGCCCAAGTCAGCTCTT-GTGGTCAGAGCCTAGAACATCGGCTGAG-GAAAC------------------AGAGC------TAGAGCTAGACCTGTTAGCAGAGACAGACCTGTTAGCAGAGTAGATAGCTGGGCCAGCAGGTCTGAAGTGACACCATGGAAGAGCAGGCCAGTAACAG--CTGAAGAGCTTCAGAAACTCCCACTTCTAACAAGGTCACTTCCTCTAAGAGGGACTACTG-TCATATCATAGTACACAGTTTTCTCTGCCTGGCT----------AATATGCAGCA-TTTGGGGGCATCCACACTAC-TGGAACAGTAGCCATGGTAAGAGTACACTGTGCCAGCTTAATTGCACCCAACTG-TACAAT-GAGAACATGGGGATCAG--TGTGTTCTGC-TACTTCTCTGCTTAGCATTCC-TGATACACTTGCTTTACATA----------GGCACCATGTGG-CACCGTGG-TGTG--TGCCTGTGCTGCTTTGAATCACATTTGGGTATCTATTGGAAGGCTTCTTCAGTACTGTTGTGACACCAACTACACTATGGACTGATCCCTGTCAGAA-GGTAACAAAGGGGCAAGGGACAGCATTTCCAGCCT-AAGCCCTGGAATGTGTGCGGCATCA-AACTG-TTTTGCA-TTTGTGAGCAGGAA-CAC-AAATGCTGAACAACAGATATTCCATTAGCAAACAGAAATTGTGACTGGCTTTAAAGAAAATGGGCTTCCCTTGGTCTTGGGAACACAAGACTCAGCAGTATAGAAAC--AGAAATGGTTGCAGGCAGAGGAAGCACTTTTACCAGAGTCAGGAAAGCATGAATCACACAAAATCTTCAGCTTTTCCTCCCTTCTCTCTCCTGAGCTCTCTGCACCTCTGCTCTAGCAGTGATGGCAGCAGTGTGAAGAACACAGCTTCAGGGAACAACCAAGGTCCAGGATCACTAGCAAAGGTTATGAGAAACTATGACTTCCTTTAGAAAAAGA----------AG-----------------GGG--GGGAAA-TGAGAGTGTCTAAGATCTTAGGAGAGGGCTGGTGCAGGCCTGGGGTGTAGTAAGTTCTGTAGCTTGTCTAGATTCACCATGCCAAGTGGGGAGGTTTCTTGGGTCAGAATATATT--ACAGGACGGTATCTCCACCGTCCCCTAGAGGTCTCAGAATGTCCACTGACTGTGGTTTCAGTGGTCCTTGAACAGAAATTTGGTAACATGAAGAGTAGCAGATGCTGGCATGGTAAGATTACAAAT-GTGTATCAGAAGAATTATTTCGTGGGTAAAag-aaaatacagcatataaaggaatgagttaataccac-gagaatgccattagcc-aaattcaggatgtggatcattctacaggacaagtaacctggcttttttggggaaac-agaagcatggg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29398246 2608 -  71996105 gttctggcaccacaccaatgactcaggactaccatagaggagggtccattaactatagtagt-aaagaaagtccaaccagatgcatctct-acccaagcagataaaaggccaatggcaaaggttatttaggactccccaagttcttgagccaggggaggagacacctgaat--aggggttggactagcaacttcccctatgttggacagagcatttctttccagacagcaaggaactccctaccaactaaagtggtctccatccatcctgttgaagtctgggccaaaacactctacatacaaataaactggaacacagc---------------ctccggctggccatttgacatggtcctttgctgcccctgtaa-ccctacagataataccagcgcttttgcccctcgggcaacatgtttggtatacactcccagcccataatcctatg-tcctaaccaacagagatggagctac--cagtcattctgtttaatggggggaaactacctcaccaagtacctgctaaacattttt-aattccacccatagtcttctgtt-cctattgctgtt-ttgctctacacctcttggtttggttcctgaat-aaacgtggcaaaaggca-tttttaattctgt-gtcttacacctggca-tacacatcatcgcctgttgt---ttgtgttgccgc-tgtggcccctgcttaacaagtagaaaacaaattgataaaatgtgtcactcacaccatcaaaatgtcacccacagcctcctcagaaggatcagggaccagggg-ggaaatgtgagtccatgaaattgtaagagctgg-ttagacgggtggGAtgtggagagacaagtgactccctcttggatgctaattctccatgctgacttct--gattagccccagtcccaggactgactcc-tgattcctactttatttaccatccctattgtaagaacatttcaaccttgatgttatcacacaaattctaggctattacacattagcattcttgcctgttctggac---agtagcctttgtcttgcacagagc-atgtatactctttctgtgtgg----tata--taagccc------tgagtgtggg--ggtaataa----gtgcagacacctg-----cctgtcttgctgcc--atccaagat--catgcttctgtctg-taagttcccc---aatagaacacccttta-ccgacaaactagatttgtctgt-cttgttccttgatttattggctcctttggcattt-ggagggcactttgaat-agat-------------------ggccctttcatggaacaGAGGGTCTGTGTGGGGCTGGGAGCCCAAGTCAGCTCTT-ATGGTCAGAGCCTAGAACATCTGCTGAG-GAGAC------------------AGAGC------TAGAGCTAGACCTGTTAGCAGAGACAGACCTGTTAGCGGAGTGGATAGCTGGGCCAGCAGGTCTGAAGTGACGCCATGGAAGAGCAGGCCAGTAACAG--CTGAAGAGCTTCAGAAACTCCCACTTCTAACAAGGTCACTTCCTCTAAGAGGGACTACTG-TCGTATCATAGTACACAGCTGTCTCTGCCTGGCT----------AATATGCAGCA-TTTGGGGGCATCCACACTAC-TGGAACAGTAGCCACGGTAAGAGTCCACTGTGCCAGCTTAATTGCACCCAACTG-TACAAT-GAGAACATGGGGATCAG--TGTGTTCTGC-TACTTCTCTGCTTAGCATTCC-TGATACACCTGCTTTACATA----------GGCACCGTGTGG-CACCGTGG-TGTG--TGCCTGTGCTGC-TTGAATCACATTTGGGTATCTATTGGAAGGCTTCTTCAGTACTGTTGTGACACCAGCTACACTATGGACTGATCCCTGTCAGAA-GGTAACAAAGGGGCAAGGGACAGCATTTCCAGCCT-AAGCCCTGGAATGTGTGTGGCATCA-AACTG-TTTTGCA-TTTGTGAGCAGGAA-CAC-AAATGCTGAACAACAGATATTCCATCAGCAAACAGAAATTGTGACTGGCTTTAAAGAAAATGGGCTTCCCTTGGTCTTGGGAACACAAGACTCAGCAGTATAGAAAC--AGAAATGGTTGCAGGCGGAGGAAGCACTTTTACCAGAGTCAGGAAAGCATGAATAACACAAAACCTTCAGCTTTTCCTCCCTTCTCTCTCCTGAGCTCTCTGCACCTCTGCTCTAGCAGTGATGGCAGCAGTGTGGAGAACACAGCCTCAGGGAACAACCAAGGTCCAGGATCCCTAGCAAAGGTTATGAGAAACTATGACTTCCTTTAGAAAAAAAGGGGTGGGGGGG-----------------GGG--GGGAAA-TGAGAGTGCCCAAGATCTTAGGAGAGGGTTGGTGCAGGCCTGGGGTGTAGTAAGTTCTGTAGCTTGTCTAGATTCACCATGCCAAGTGGGGAGGTTTCTTGGGTCAGAATATATT--ACAGGACAGCATCTCCACCCTCCCCTAGAGGTCTCAGAATGTCCACTGACTGTGGCTTCCGTGGTCCTTGAACAGAAATTTGGTAACATGAAGAGTAGCAGATGCTGGCATGGTAAGATTACAAAT-GTATATCAGAAGAATTATTTCGTGGGTAacag-aaaatacaacatataaaggaatgagttaataccat-gagaatgccattagccaaaattccggatgtggatcattctacaggacaagtaacctggcttttttgaggaaac-agaagcatagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     166179 2604 -    735854 gttctggcaccacaccaatgactcaggactaccatagaggagggtccattaaccatagtagt-aaagaaagtccaaccagatgcatctct-acccgagcagataaaaggccaatggcaaaggttatttaggattccccaagatcttgagacaggggaggagactcctgaat--gggggttggactagcaacttccccgatgttggacagagcatttctttccagacagcaaggaattccctaccaactaaagtggtctccatcgaccctgttaaagtctgtgccaaaacactccacatacaaataaactggaacacagg---------------ccccagctggccatttgacatggtcctttgctgcccctgtaa-ccctacagataataccagcgcttttgcccctcaggcaacatgtttggtatacactcccagcccataatcctatg-tcctaaccatcagagatggagctac--caggcattctgtgtaatagggaaaaactgcctcaccaagtacctgctaaacattttt-aattccacccatagtcttctgtt-cctattgctgtt-ttgctctacacctcttggtttggctcctgaat-aaacgtggcaaagggca-ttttaaattctgt-gtcttacacttggca-tacacatcatcgcctgttgt---ttgtgttgccgc-tgtggcccctgcttaacaagtagaaaacaaattgataaaatgtgtcactcacaccataaaaatgtcacccacagcctcctccgaaggatcagggacc-gggg-ggaaatgtgagtccatgaaattgtaagagctgg-ttagacgggtggGAtgtggagagaaaagtgactccctcttggatgctaattctccatgctgacttct--gattagccccagtcccaggactgactcc-tgattcctactttatttaccgtccctattgtaagaacatttcaactttgatgttatcatgcaaattctaggctattacacattagcattcttgcctgttctggac---agtagcctttgtcttgcacagagc-atgtatactctttctgtgtga----tata--taagccc------tgagtgtggg--ggtaataa----gtgcagacacctg-----cctgtcttgctgcc--atccaagat--catgcttctgtctg-taagttcccc---aatagaacacccttta-ccaacaaactagatttgtctgt-cttgttccttggtttattggctcctttggcattt-ggggggcactttgcat-agat-------------------ggccctttcatggaacaGAGGGTCTGTGTGGGGCTGGGAGCCCAAGTCAGCTCTT-GTGGTCAGAGCCTAGAACATCTGCTGAG-GAGACAAAGCT------------AGAGC------TAGAGCTAGACCTGTTAGCAGAGACAGACCTGTTAGCGGAGTGGATAGCTGGGCCAGCAGGTCTGAAGTGACGCCATGGAAGAGCAGGCCAGTAACAG--CTGAAGAGCTTCAGAAACTCCCACTTCTAACAAGGTCACTTCCTCTAAGAGGGACTACTG-TCGTATCATAGTACACAGTTGTCTCTGCCTGGCT----------AATATGCAGCA-TTTGGGGGCATCCACACTAC-TGGAACAGCAGCCACGGTAAGAGTCCACTGTGCCAGCTTAATTGCACCCAACTG-TACAAT-GAGAACATGGGGATCAG--TGTGTTCTGC-TACTTCTCTGCTTAGCATTCC-TGATACACCTGCTTTACATA----------GGCACCATGTGG-CACCGTGG-TGTG--TGCCTGTGCTGCTTTGAATCACATTTGGGTGTCTATTGGAAGGCTTCTTCAGTACTGTTGTGACACCAACTACACTATGGACTGATCCCTGTCAGAA-GGTAACAAAGGGGCAAGGGACAGCATTTCCAGCCT-AAGCCCTGGAATGTGTGTGGCATCA-AACTG-TTTTGCA-TTTGTGAGCAGGAA-CAC-AAATGCTGAACAACAGATATTTCATCAGCAAACAGAAATTGTGACTGGCTTTAAAGAAAATGGGCTTCCCTTGGTCTTGGGAACACAAGACTTAGCAGTATAGAAAC--AGAAATGGTTGCAGGTGGAGGAAGCACTTTTACCAGAGTCAGGAAGGCATGAATCACACAAAATCTTCAGCTTTTCCTCCCTTCTCTCTCCTGAGCTCTCTGCACCTCTGCTGTAGCAGTGATGGCAGCAGTGTGGAGAACACAGCCTCAGGGAACAACCAAGGTCCAGGATCCCTAGCAAAGGTTATGAGAAACTATGACTTCCTTTAGGGAAAAA---------AAG-----------------GGG--GGGAAA-TGAGAGTGCCCAAGATCTTAGGAGAAGGCTGGTGCAGGCCTGGGGTGTAGTAAGTTCTGTAGCTTGTCTAGGTTCACCATGCCAAGTGGGGAGGTTTCTTGGGTCAGAATATATT--ACAGGACAGCATCTCCACCCTCCCCTAGAGGTCTCAGAATGTCCACTGACTGTGGCTTCAGTGGTCCTTGAACATAAATTTGGTAACATGAAGAGTAGCAGAAGCTGGCATGGTAAGATTACAAAT-GTGTATCAGAAGAATTATTTCGTGGGTAacag-aaaatacagcatataaaggaatgagttaataccac-gagaatgccattagcc-aaattcaggatgtggatcattctacaggacaagtaacctggcttttttggggaaac-agaagcatggg
i manLeu1.NW_012107142v1   C 0 I 12946
s colAng1.NW_012115577v1     135931 2599 -   1829203 gttctggcaccacaccaatgactcaggactaccatagaggagggtccattaaccatagtagt-aaagaaagtccaaccagatgcatctct-acctgagcagataaaaggccaatggcaaaggttatttaggactccccaagatcttgagccaggggaggagacacctgaat--gggggttggactagcaacttctcctatgttggacagagcatttctttccagacagcaaggaattccctaccaactaaagtggtctccatcgatcctgttaaagtctgggccaaaacactccacatacaaataaactggaacacag----------------ccccggctggccatttgacatggtcctttgctgcccctgtaa-ccctacagataataccagcacttgtgcccctcaggcaacatgtttggtatacattcccagcccataatcctatg-tcctaaccaacagagatggagctac--cagtcattctgtttaatggggaaaaactgcctcaccaagtacctgctaaacattttt-aattccacccacagtcttctgtt-cctattgctgtt-ttgctctacacctcttggtttggttcctgaat-aaacgtggcaaagggca-tttttaattctgt-gtcttacacttggca-tacgcatcatcacctgttgt---ttgtgttgctgc-tgtggcccctgcttaacaagtagaaaacaaattgataaaatgtgtcactcacaccatcaaaatgtcacccacagcctcctccgaaggatcagggaccagggg-ggaaatatgagtccatgaaattgtaagagctggattagatgggtggGAtgtggcgagaaaagtgactccctcttggatgctaattctccatgctgacttct--gattagccccagtcccaggactgactcc-tgattcctactttatttaccatccctattgtaagaacatttcaaccttgatgttatcacacaaattctaggctattacacattagcattcttgcctgttctagac---agtagcctttgtcttgcacagagc-atgtatactctttctgtgtgg----tata--taagccc------tgagtgtggg--ggtaataa----gtgcagaaacctg-----cctgtcttgctgcc--atccaagat--catgcttctgtctg-taagttcccc---aatagaacacccttta-ccgacaaactagatttgcctgt-cttattccttggcttattggctcctttggcattt-ggggggcactttgcat-agat-------------------ggccctttcatggaacaGAGGGTCTGTGTGGGGCTGGGAGCCCAAGTCAGCTCTT-GCGGTCAGAGCCTAGAACATCTGCTGAG-GAGAC------------------AGAGC------TAGAGCTAGACCTGTTAGCAGAGACAGACCTGCTAGCGGAGTGGATAGCTGGGCCAGCAGGTCTGAAGTGACGCCATGGAAGAGCAGGCCAGTAACAG--CTGAAGAGCTTCAGAAACTCCCACTTCTAACAAGGTCACTTCCTCTAAGAGAGACTACTG-TGGTATCATAGTACACGGCTGTCTCTGCCTGGCT----------AATATGCAGCA-TTTGGGGGCATCCACACTAC-TGGAACAGTAGCCACGGTAAGAGTCCACTGTGCCAGCTTAATTGCACCCAACTG-TACAAT-GAGAACATGGGGATCAG--TGTGTTCTGC-TACTTCTCTGCTTAGCATTCC-TGATACACTTGCTTTACATA----------GGCACCATGTGG-CACCGTGG-CGTG--TGCCTGTGCTGCTTTGAATCACATTTGGGTATCTATCGGAAGGCTTCTTCAGTACTGTTGTGACACCAACTACACTATGGACTGATCCCTGTCAGAA-GGTAACAAAGGGGCAAGGGACAGCATTTCCAGCCT-AAGCCCTGGAATGTGTGTGGCATCA-AACTG-TTTTGCA-TTTGTGAGCAGGAA-CAC-AAATGCTGAACAACAGATATTCCATCAGCAAACAGAAATTGTGACTGGCTTTAAAGAAAATGGGCTTCCCTTGGTCTTGGGAACACAGGACTCAGCAGTATAGAAAC--AGAAATGATTGCAGGCAGAGGAAGCACTTTTACCAGAGTCAGGAAAGCATGAATAACACAAAATCTTCAGCTTTTCCTCCCTTCTGTCTCCTGAGCTCTCTGCACCTCTGCTCTAGCAGTGATGGCAGCAGTGTGGAGAACCAAGCCTCAGGGAACAACCAAGGTCCAGGATCCCTAGCAAAGGTTATGAGAAACTATGACTTCCTTTAGAAAAATA---------AGG-----------------GGG--GGGAAA-TGAGAGTGCCCAAGATCTTAGGAGAGGGCTGGTGCAGGCCTGGGGTGTAGTAAGTTCTGTAGCTTGTCTAGATTCACCATGCTAAGTGGGGAGGTTTCTTGGGTCAGAATATATT--AAAGGACTGAATCTCCACCCTCCCCTAGAGGTCTCAGAATGTCCACTGACTGTGGCTTCAGTGGTCCTTGAACAGAAATTTGGTAACATGAAGAGTAGCAGATGCTGGCATGGTAAGATTACAAAT-GTGTATCAGAAGAATTACTTCGTGGGTAacag-aaaatacaacatataaaggaacgagttaataccat-gagaatgccattagcc-aaattcaggatgtggatcattctacaggacaagtaacctggcttttCtggggaaac-agaaacatagg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30315842 2569 + 171630274 GTGCTAGCACCACATCAATGACTCAGGACCACCACAGAGGAGGGTCCATTAACCACAGTAGT-AAAGAAAGTCCAACCAGATGCATCTCT-ACTGGAGCAGATAAAAGGCCAATGGCAAAGGTTATTTAGGACTCC-CAAGATCTTGAGCCAGGGGAGGGGATACCTGAAT--GGGGGTTGGACGAGCAACTTTCCCTATGTTGGACAGAGCATTTCTTCCCAGACAGCAAGGAATTCCCTTCCTACTAAAGTTGTCTCCACTGATTTTGTTGAAGTCTGGGCCAAAACACTCCACATACCAATA------AGCACAGA-CCCTTAAAGAAGCATC----------------CATGGTCCATTGCTGCCCTTGTAA-CTTTACAGAAAATACGAGCACCTTTGCCCCTCTGGCAACATGTTTGGTATGCACTCCCCACCCATAATCCCACG-TCCTATCCAACAGAGATGGAGCTACCACAGTCATTCTGTTTAAGCGGGAAGAACTGTCCCACCAGGTACCCGTGAAACATTTTT-AATTCCACCCATAGTCTTCTGTT-CTTATTGCTGTT-CTGCTCTACACCTCTTGGTTTGGTTCCTGAAT-AAACATGGCAGCAGGCATTTTTTAATTCTGT-GTCTTACACCTTGCA-TACATATCATTACCTGTTGG---TTGTGTTATCGC-TGTGGCACCCGCTTAACATGTAGAAAACAAATTGACAAAA-GTGTCACTCACACTATCAAAATGTCACCCACAGCCTCCCCCGAAGGCTCAGGGACCATGGAAGGAAATGTGAGTCCATGAGATTGTAAGAGCTGGATTAGAGGGGTGGGAtgtggaaagaaaagtgactccctcttggatattaattttccatgttgacttct--gattagcaccagtcccaggaatgactcc-cgatt------------------cctattgtaagaacacattgaccttgatgttatcacacagattctaggctatgacacattagcattcttgcctgttctggac---agttgcctttgtctcacacagagc-acgtatactctatccctgtgg----tata--taagccc------tgggtgtggg--ggtaacaa----gtgcagaaaccta-----cctatcttgctgcc--atccaagac--cacgct--tgtctg-taagtttccc---aataaaacacccttta-ctgacacaccagatttgtctgt-tttgttagttggtttattggctcctttggcattt-ggggggcactttgcat-atat-------------------ggccctttcatggaacaGAGGGTCTGTGTGGGGCTGGGAGCCCAAATAAGCCCTT-GTAGTCAGAGGCTAGAACATTTGCTGAG-GAGAC--------------------AGT------------TAGACCTGTTAGCAGAGACAGACCTGTCATCACAGTGGATAGCTGGGCCAGCAGGTCGGGAGTGACGCTATGGAAGAGCAGGTCAGTGACAGCTCTAAAGAGCTTCAGAGACTCCCGCTTCTAACAAGCTCACTTCCTCTAAGAGGGACTACTG-TCATATCATAGTACACAACTGTCTCTGCCTGGTTGTC-CTAGTAAATATTCAGCA-TCTGGGGGCATCCACACTAC-TGTGACAGTAGCCACGGGAGCAGTCCACTGTGCCAGCTCAATTGCACCCAAGTA-TACGAT-GAGAACATGGGAATCAG--TGTGTTCTGC-TGCTTCTTTGCTTAGCACTCC-TGGTATA---------CATG----------GGCACCCTGTGG-CACCGTGG-TGTG--TGCCTGTGCACCTTTGAATCACATTTGGGTATCTACTGAAAGGTTTCTTCAGGACTGTTGTGACTCCAACTACACTATGGACTGATCCCTGTCGGAA-GGTAACAAAGGGACAAGAAACAGCATTTCCAGCCT-AAGTCCTGGAATGTGGGTGGCATCA-AACCG-TTTTGCA-TTTGAGAGCAGGAA-CAC-AATTG---TACAACAAATATTCCATCAGCCAACAGAAACTGTGATTGGCTTTAAAGAAAATGGGCTTCCCTTTGTCTTAGGAACATAAGGCTCAGCAGTATAGAAACAGAGAAGTGGTTGCAGGTGGAGAAAGCACTTTTACCAGAGTCAGAAAGGCAACAATAACCCCAAATCTCCACCTTTTCCTCCCTTCTCTGTCTGGAGCTCTCTGCACCTCTGTTCCAGCAGTGATGGCAGCAGGGTGGAGATCACAGCCTCAGGGAACAACCAAGGCCCAGCATCCCTAGCAAAGGTTATGAGAAACTATTACTTCCTTTAAAAAACAA----------CACGGTGGG----------GGG--AGGGAATTGAGAGTGCCTAAGGTCTTAGGAGAGGGCTGGTGCAGGCCTGGGGTGTAGCAAATTCTGTAGCTTGTCTAGAGTCACCATGCCAAGTGGGGAGGTTGCTTGAGTGAGAATGTATT--A-AGGATAGCATCTGCACCCTCCTCTAGAGGTTTTAGAATGTCCA-TGACTGTGGCTTTAGTGGTCCTTGAACAGAAATTTGGTAACATAATGAGTAGCAGGTGCTGGCATGGTAAGGTTACAAAT-GTGTATC---AGAATTATTTTGTGGGTAacag-aaaatacaatatataaagaaacaagttaatactat-gagaaagccattagcc-aaattcagaatgtggatgattctacagaacaagtaatctggctttgttggggaaac-agaagcatagg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           141061 2604 +    515838 GTGCTGGCACCACATCAATGACTCAGGACCACCACAGAGGAGGGTCCATGAACCACAGTAGT-AAAGAAAGTCCAACCAGATGCATCTCT-ACTGGAGCAGATAAAAGGCCAATGGCAAAGGTTATTTAGGACTCC-CAAGATCTTGAGCCAGGGGAGGGGATGCCTGAAT--GAGGGTTGGACTAGCAACTTTCCCTATGTTGGACAGAGCATTTCTTCCCAGACCACAAGGAATTCCCTTCCTACTAAAGTTGTCTCCACTGATCCTGTTAAAGTCTGGGCCAAAACACTCCACATACCAATA------AACACAGC-CCCTTAAAGAAGCATTCTGGCT-GCCATTTGACATGGTCCTTTGCTGCCCCTGTAA-CTTTACGGAAAATACCAGCACCTTTGCCCCTCTGGCAACATGTTTGGTATGCACTCCCCACCCATAATCCCATG-TCCTATCCAACAGAGATGGAACTATCACAGTCATTCTGTTTAA-TGGGAAGAACTGCCCCACCGGGTACCTGCTAAACATTTTT-AATTCCACCCATAGTCTTCTGTT-CTTATTGCTGTT-CTGCTCTGCATCTCTTGGTTTGGTTCCTGAAT-AAACATGGCAACAGGCA-TTTTTAATTCTGT-GTCTTACAGCTGGCA-TACATAACATTACCTGTTGG---TTGTGTTATCGC-TGTGGCCCCTGCTTAACATGTAGAAAACAAATTGACAAAAGGTGTCACTCACACCATCAAAATGTCATCCACAGCCTCCCCTGAAGGCTCCAGGACCATGGGAGGAAATGTGAGTTCATGAGATTGTAAGAGCTGGATTAGAGGGGTGGGAtgtggaaagaaaa-tgactccctcttggatgctaattcaccatgttgacttct--gattagtaccagtcccaggaatgactcc-cgatt------------------cctactataagaacatgtcaaccttgatgttatcacacaaattctgggctatgacacattagcattttt-cctgttctagac---agttacctttgtcttgcacagacc-acgtatactctttccctgtgg----tata--taagccc------tgggtgtggg--ggtaacaa----gtgcagaaaccta-----cctatcttgctgcc--atccaagac--catgtttctgtctg-caagtttccc---aataaaacatccttta-ctgtcacactagatttgtctgt-tttgttagttggtttattggctccttcagcattt-ggggggcactttgcat-atat-------------------ggccctttcatggaacaGAGGGTCTGTGTGGGGCTGTGAGCCCAAATAAGCCCTT-GCAGTCAGAGCCTAGAACATTCGCTGAG-GAGAC------------------AGAGC------------TAGACCTGTTAGCAGAGACAGACCTGTTATCAGAGTGGATAGCTGGGCCAGTAGGTCTGAAGTGACGCTATGGAAGAGCAGGCCAGTGACAGCTCTGAAGAGCTTCAGAGACTCCCACTTCTAACCAGCTCACTTCCTCTAAGAGGGACTACTG-TCGTATCATAGTAAGCGACTGTCTCTGCCTGGTTGTC-CTAGTAAATATCCAGCA-TTTGAGGGCATCCACGCTAC-TGGAACAGTAGCCACAGGAACA-TCGACCTTGTCAGCTTAATTGCACCCAAGTA-TACAAT-GAGAACGTGGGAATCAG--TGTGTTCTGC-TGCTTCTCTGCTTAGCACTCC-TGGTATACCTGCTTTGCATA----------GGCACCATGTGG-CACCATGG-TGTG--TGCCCATGCACCTTTGAATCACATTTGGGTATCTACTGAAAGGCTTCTTCGGGGCTGTTGTGACTTCAACTACACTATGAACTGATCCCTGTCAGAA-GGTAACAAAGGGACAAGGAACAGCATTTCCAGCCT-AAGTCCTGGAATGTGTGTGGCATCA-AACCG-TTTTGCA-TTTGAGAGCAGGAA-CCC-AACTGTACTACAACATATATTCCATCAGCCAACAGAAATTGTGATTGGTTTTAAAGAAAATGTGCTTCCCTTGGACTTAGAAACATAAGACTCTACCGTATAGAAACAGAGAAGTGGCTGCAGGTGGAGAAAGCACTTTTACCAGAGTCAGGGAGGCAACAATAACCCAAAATCTCCAGCTTTTCCTCCCTTCTCTCTCTCGAGCTCTCTGCACCTCTGTTCCAGCAGTGATGGCAGCAGTGCGGAGATCACAGCCTCAGGGAACAACCACGGCCCAGCATCACTAGCAAAGGTTATGAGAAACTATGACTTCCTTTAAAAAACAA----------CACGGTGGGGGAGGGCTGCGGG--AGGGAA-TGAGAGTGCCTAAGGTCTTAGGAGAGGGCTGGTGCAGGCCTGGGGTGTAGCAAATTCTGTAGCTTGTCTAGCGTCACCATGCCAAGTGGGGAGGTTGCCTGAGTGAGAACATATT--A-AGGATAGCATCTGCACCCTCCTCTAGAGG-TCTGGAATGTCCA-TGACTGTGGCTTTAGTGGTCCTTGAACAGAAATTTGGTAATGTGATGACTAGCAGATGCTGGCATGGTAAGGTTACAAAT-GTGTATC---AGAATTACTTTGTGGGTAacag-aaaatacaatatataaagaaacaagttaatactat-gagaatgccattagcc-aaattcagaatgtggatgattctacaggacaagtattctggctttgttggggaaaa-agaagcatagg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     682278 2621 -   1771730 GTgctggcaccacatcaatgactcaggaccaccacagaggagggtccattaaccatagcagt-aaaggaagtccaaccagatgcatctct-actggagcagataaaaggccaatggcaaaggttatttaggactcc-caagattttgagccaggggaggggatacctgaat--gggggttggactagcaactttccctacgttggacagagcatttcttcccagaccgcaaggaattcccttcctactaaagttatctccattgatcctgttgaagtctgggccaaaacactccacataccaata------aacacagc-cccttaaagaagcatcctggct-gccatttggcatggtcctttgctgcccctgtaa-ctttacagaaaataccagcacctttgcccctctggcaacatgtttggtatgcactccccacccgtaatcccacg-tcctatccaacagagatggagctatcacagtcattctgtttaatggggaagaactgccccaccaggtacctgctgaacattttt-aattccacccgtagtcttctgtt-cttattgctgtt-ctgctctgcacctcttggtttggttcctgaat-aaacatggcaaaaggca-tttttaattctgt-gtcttacacctggca-tacatatcattacctgttgg---ttgtgttattgt-tgt-gcccctgcttaacatgtagaaaacaaattgacaaaaggtgtccctcacaccatcaaaatgtcacccacatcctcccccaaagcctcagggaccatgggaggaaatgtgagtccatgagattgtaagagctggattatgggggtgTGAtgtgggaagaaaagtgactccctcttggatgctaattctccatgttgacttct--gattagtaccagtcccaggaatgactcc-cgatt------------------cctattgtaagaacatgtcaaccttgatgttatcacccaaattctgggctatgacatgttagcatttttgcctgttctggac---agttgcctttgtcttgcacagagc-acgtatactctttccctgtgg----tata--taagccc------tgggtgtggg--ggtaacaa----gtgcagaaaccta-----cctatcttgctgcc--atccaagac--cacgcttctgtctg-taagtttccc---aataaaacacccttta-ctgacacactagatttgtctgt-tttgttacttggtttattggctcttttggcatttgggggggcactttgcat-atat-------------------ggcctttccatggaacaGAGGGTCTGTGTGGGGCTGGGAGCCCAAATAAGCACTT-GTAGTCAAAGCCTAGAACATTCACTGAG-GAGACAGAACAACACCTGTTAGCAGAGA------------CAGACCTGTTAGCAGAGACAGACCTGTTACCAGAGTGGATAGCTGGGCCAGCAGGTCTGGAGTGATGCTATGGAAGAGCAGGCCAGTGACAG--CTGAAGAGCTTCAGAGGCTCCCACTTCTAACAAGCTCACTTCCTGTAAGAGGGACTGCTG-TCGTATCATAGTACTCAACTGTCTCTGCCTGGTTGTC-CTAATAAATATTCAGCA-TTTGGGGGCATCCACGCTAC-TGGAACAGTAGCCACGGGAACAGTCCACTGTGCCAGCTTAATTGAACCCAACTA-TACAAT-GAGAAAGTGGGAATCAG--TGTGTTCTGC-TACTTCTCTGCTTAGCACTCC-T-ATATACCTGCTTTACATA----------GGCACCATGTGG-CACCGTGG-CGTG--TGCCTGTGCGCCTTTGAATCACATTTGTGTGACTATTGAAAGGCTTCTTCGGGACTGTTGTGACTTCAACTACACTATGGACTGATCCCTGTCGGAA-GGTAACAAGGGGACAAGGGACAGCATTTACAGCCT-AAGTCGTGGAATGTGTGTGGCATCA-AACGG-TTTTGCA-TTTGAGAGCAGGAA-CAC-AGCTGTACGGCAACAGATACTCCATCAGCCAACAGAAATTGTGATTGGCTTTAAAGAAAATGGGCTTCCCTTGGTCTTAGGAACATAAGACTCAGCAGTATAGAAACAGAGAAATGGTTGCAGGTGGAGAAAGCACTTTTACCAGAGTCAGAAAGGCAAC---AACCCAAAATCTCCAGCTTTTCCTCCCTTCTCTCTCTCGAGCTCTCTGTACCTCTGCTCCAGCAGTGATGGCAGCAGTGTGGAGATCACAGCCTCAGGGAACAACCAAGGCCCAGCATCACTAGCAGAGGTTATGAGAAACTACGACTTCCTTTAAAAAACAA----------CACAGTGGGGGAGGGCCGGGGT--GGGGAA-TGAGAGTGCCTAAGGTCTTAGGAGAGGGCTGGTGCAGGCCTGGGGTGTAGCAAATTCTGTAGCTTGTCTAGAGTCACCATGCCAAGTGGGGAGGCTGCCTGAGTGAGAATATATT--A-AGGGTAGCATCTGCACCGTCCTCTAGAGGTCTCAGAATGTCCA-TGACTGTGGCTTTAGTGGTCCTTGAACAGAAATTTGGTAACATGATGAGTAGCAGGTGCTGGCACGGTAAGGTTACAAAT-GTGTAGC---AGAATTATTCTGTGGATAacag-aaaatacaatatataaagaaacaagttaatactat-gagaaagccattagcc-aaattcagaatgtggatgattctacaggacaagtaatctggctttgttggggaaac-agaagcatagg
i cebCap1.NW_016107755v1   T 96459 C 0
s aotNan1.NW_018496904v1     245789 2608 -    383796 gtgctggcaccacaccaatgactcaggaccaccacagaggagggtcccttaaccatagtagt-aaagaaagtccaaccagatgcatctct-actggagcagataaaaggccaatggcaaaggttatttaggactcc-caggatcttgagccaggggaggggatacttgaat--ggaggttggactagcaactttccctatgttggacagagcatttcttcccagacagcaaggaattcccttcttactaaagttgtctccattgatcctgttgaagtctgggccaaaacactccatataccaata------aacacagc-cccttaaagaagcatcctggat-gccatttgacgtggtcctttgctgcccctgtaa-ctttacagaaaataccagcacctttgcccctctggcaacatgtttggtatgcactccccacccataatcccatg-tcctatccaacagagatggagctaccacagtcattctgtttaagggggaagatctgccccaccaggtacctgctaaatatttttaaattccacccatagtcttctgtt-cttatggctgtt-ctgctctacacctcttggtttggttcctgaat-aaacatggcaaaaggca-tttttaattctgt-gtcttacacctggca-tacttatcattacctgttgg---ctgtgttattgc-tgtggcccctgcttaacaagtagaaaacaaattgacaaaaagtgtcactcacaccatcaaaatgtcacccacagcctcccctgaaggctcagggaccatgggggcaaatgtgagtccatgagattgtaagagctggattagaggggtggGAtgtggaaagaaaagtggctccctcttggatgctaattctccgtgttgacttctcggattagcaccagtcccaggaatgactcc-cgatt------------------cctattgtaagaacatgtcaaccttgatgttatcacacaaattctaggctatgacatgttagcattcttgcctgttctagac---agttgcctttgtcttgcacagagc-acgtatactctttccctgtgg----tata--taagccc------tgggtatggg--ggtaacaa----gtgcagaaaccta-----cctatcttgctgcc--atccaagac--cacgcttctgtctg-taagtttccc---aataaaacacccttta-ctgacacactagatgtgtctgt-tttgttagttggtttattggctcctttggcatat-ggggggcattttgcat-atat-------------------ggccctttcatgaaacaGAGGGTCTGTGTGGGGCTGGGAGCCCAAATAAGTGCTT-GTAGTCAGAGCCTAGAACATTCACTGAG-GAGAC------------------AGAGC------------TAGACCTGTTAGCAGAGACAGACCTGTTATCAGAGTGGATAGTTGGGCCCGCAGGTCTGGAGTGATGCTATGGAAGAGCAGGCCACTGACAG--CTGAAGAGCTTCAGAGACTCCCACTTCTAACCAGCTCACTTCCTTTAAGAGGGACTACTG-TCGTATCATAGTACACAATTGTCTCTGCCTGGTTGTC-CTAGTAAATATTTAGCA-TTTGGGGGCATCCACGCTAG-TGGAACAGTAGCCACGGGAACAGTCCACTGTGCTAGCTTAGTTGCACCCAACTA-TACAAT-GAGAATGTGGGAATCAG--TGTGTTCTGC-TACTTCTCTGCTTAGCACTCC-TGGTATATCTGCTTTACATA----------GGCACCATGTGG-CACCGTGG-TGTGTTTGCCTGTGCACCTTTGAATCACATTTGGGTATCTATTGAAAGGTTTCTTCAGGGCTGTTGTGACTCCAACTACACTATGGACTGATCCCTGTCAGAA-GGTAACAAAGGGACAAGGGACAGCATTTCCAGCCT-AAGTCCTGGAATGTGTGTGGCATCA-AACCG-TTTTGCA-TTTGTGAGCAGGAA-CAC-AACTGTATAACAATAGATATTCCATCAGTCAACAGAAATTGTGATTGGCTTTAAAGAAAATGGGCTTCCCTTGATCTTAGAAACATAAGACTCAGCAGTATAGAAACAGAGAAATGGTTGCAGGTGGAGAAAGCACTTTTACTGGAGTCAGGAAGGCAACAATAACCCAAAATCTCCAGCTTTTCCTCCCTTCTC--TCTCAAGCTGTCTGTACCTCTGTTCCAGCAATGATGGCAGCAGTGTGGAGATCACAGCCTCAGGGAACAACCAAGGCCCAGCATCACTAGCAAGGGTTATGAGAAACTATGACTTCCTTTTTTAAAAAA----------CACGGTTGGGGAGGGC---TGG--GGGGAA-TGAGAGTGCCTAAGGTCTTAGGAGAGGGCTGATGCAGGCCTGGGGTATAGCATATTCTGTAGCTTGTCTAGAATCACCATGCCAAGTGAGGAGGTTGCTTGAGTGAGAATATATT--A-AGGATAGCATCTGCACCCTCCTCTAGAGGTCTCAGAATGTCCACTGACTGTGGCTTTAGTGGTCCTTGAACAGAAATTTGGTAACATGATGAGTAGCAGGTGCTGGCATGGTAAGATTACAAAT-GTGTATC---AGAATTATTTTGCGGGTAacag-aaaatacaacatataaagaaacaagttaatactat-gagaaagccattagcc-aaatgcagaatgtggatgattctacaggacaagtaatctggctttgttggggaaac-agaagcatagg
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464    5 +  18854210 I

a score=2274763.000000
s hg38.chr6_GL000254v2_alt  1365283 238 +   4827813 agagcca-----gggtgacaccattttaaagtcaactccatctttcaactagcaaggca-tattccttgccagt-cacaacccatggtcataagaggtttacag-ctgattaaacaac---ttaataatgcctg-caagaacaaacgcctatgacagacaacagaatgtccacatgtcctgacgtcaca-ttataatatatgcttttaagattattata-gtcatgctttgata----tactaactaaaatgccaa
s panTro5.chr6             30238672 238 + 175400573 agagcca-----gggtgacaccattttaaagtcaactccatctttcaactagcaaggca-tattccttgccagt-cacaacccatggtcataagaggtttacag-ctgatcaaacaac---ttaataatgcctg-caagaacaaacgcctatgacagacaacagaatgtccacatgtcctgacgtcaca-ttataatatatgcttttaagattattata-gtcatgctttgata----tactaactaaaatgccaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30469211 238 + 173848474 agagcca-----gggtgacaccattttaaagtcaactccatctttcaactagcaaggca-tattccttgccagt-cacaacccatggtcataagaggtttacag-ctgatcaaacaac---ttaataatgcctg-caagaacaaacgcctatgacagacaacagaatgtccacatgtcctgacgtcaca-ttataatatatgcttttaagattattata-gtcatgctttgata----tactaactaaaatgccaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     175774 248 +   2037526 agagccaggtcggggtgacaccattttaaagtcaactccatctttcaactagcaaggcattattccttgccagtccacaacccatggtcataagaggtttacagtctgatcaaacaac---ttaataatgcctgccaagaacaaacgcctatgacagacaacagaatgtccacatgtcctgacgtcacatttataatatatgcttttaagattattata-gtcatgctttgata----tactaactaaaatgccaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74845356 238 + 122973662 agagcca-----gggtgacaccattttaaagtcaactccatctttcaactaacaaagca-tattccttgccagt-cacaacccatggtcataagaggtttacag-ctgaacaaacaac---ttaataatgcctg-caagaacaaacgtctatgacagacaacagaatgtccacatgtcctgacatcaca-ttataatatatgcttttaagattattata-gtcatgctttgata----tactaactaaaatgctaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30701811 239 + 172585720 agagcca-----gggtgacaccattttaaagtcaactccatttttcaactagcaaggca-tattccttgccagt-cacaacccatggttctaagaggtttacag-cttaacaaacaac---ttaataatgcctg-caagaacaaacacctatgacagacaacagaatgtccacatgtcctgacatcaca-ttacaatatatgcttttaagattattgtaggtcatgctttgata----tactaactaaaatgccaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30001390 238 - 170955103 agagcca-----gggtgacaccattttaaagtcaactccatttttcaactagcaaggca-tattccttgccagt-cacaacccatggttctaagaggtttacag-ctgaacaaacaac---ttaataatgcctg-caagaacaaacacctatgacagacaacagaatgtccacatgtcctgacatcaca-ttacaatatatgcttttaagattattata-gtcgtgctttgata----tactaactaaaatgccac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     228027 238 +   1495729 agagcca-----gggtaacaccattttaaagtcaactccatttttcaactagcaaggca-tattccttgccagt-cacaacccatggttctaagaggtttacag-ctgaacaaacaac---ttaataatgcctg-caagaacaaacacctatgacagacaacagaatgtccacatgtcctgacatcaca-ttacaacatatgcttttaagattattata-gtcgtgctttgata----tactaactaaaatgccaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     350023 238 -    863181 agagcca-----gggtgacaccattttaaagtcaactccatttttcaactagcaaggca-tattccttgccagt-cacaacccatggttctaagaggtttacag-ctgaacaaacaac---ttaataatgcctg-caagaacaaacacctatgacagacaacagaatgtgcacatgtcctgacatcaca-ttacaatatatgcttttaagattattata-gtcatactttgata----tactaactaaaatgccaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29400854 238 -  71996105 agagcca-----gggtgacaccattttaaagtcaactccatttttcaactagcaaggca-tattccttgccagt-cacaacccatggttctaagaggtttacag-ctgaacaaacaac---ttaataatgcctg-caagaacaaacacctatgacagacaacagaatgtccacatgtcctgacatcaca-ttacaatatatgcttttaagattattata-gtcatgctttgata----tactaactaaaatgccaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     181729 238 -    735854 agagcca-----gggtgacaccattttaaagtcaactccatttttcaactagcaaggca-tattccttgccagt-cacaacccatggttctaagaggtttacag-ctgaacaaacaac---ttaataatgcctg-caagaacaaacacctatgacagacaacagaatgtccacatgtcctgacatcaca-ttacaatatatgcttttaagattattata-gtcgtgctttgata----tactaactaaaatgccaa
i manLeu1.NW_012107142v1   I 12946 C 0
s colAng1.NW_012115577v1     138530 238 -   1829203 agagcca-----gggtgacaccattttaaagtcaactccatttttcaactagcaaggca-tattccttgcaagt-cacaacccatggttctaagaggtttacag-ctgaacaaacaac---ttaataatgcctg-caagaacaaacacctatgacagacaacagaatgtccacgtgtcgtgacatcaca-ttacaatatatgcttttaagattattata-gtcatgctttgata----tactaactaaaatgccaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30318411 235 + 171630274 agagcca-----gggtgacaccactttaaaatcaactccgtctttcaactagcaaggca-tattccttgacaat-cacaacccatggtcataa---gcttatag-ctgaacaaacaac---ttaataatgccta-taagaacaaacgtcaat----gacaacaggatgtccacatgtcctgacatcaca-taataatacatgcttttaagattattata-gtcatgcttagatgtacttactaactaaaatgccaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           143665 228 +    515838 agagcct-----gggtgacaccattttaaagtcaactctgtctttcaactagcaggtca-tattccttgccaac-tacaacccatggttataa---gtttacag-ctgaacaaacagc---ttaataatgcctg-taagaacaaatgccaat----gacaacagaatgtccacatgccctgacatcaca-taacaataaatgcttttaagattactata-gtc-------gatgtacttactaactaaaatgccaa
i saiBol1.JH378341         C 0 I 308
s cebCap1.NW_016107755v1     684899 238 -   1771730 agagccc-----gggtgacaccattttaaaatcaactccgtctttcaactagcaaggcg-tattccttgccaat-cacaacccatggtcataa---gtttaccg-ctgaacaaacaacaaaattattatgcctg-taagaacaaacgccaat----gacaacagaaggtccacatgtccggacatcaca-taataataaatgcttttaagattattata-gtcatgctttgatgtacttactaactaaaatgccaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     248397 235 -    383796 agagcca-----gggtgacaccattttaaaatcaactccatctttcaactagcaaggca-tgttccttgccaat-cacaacccatggtcataa---gtttacag-ccaaacaagcaac---ttaataatgcctg-taagaacaaacaccgat----gacaacagaatgtctacatgtcctgacatcaca-taaatataaatgcttttaagattattaca-gtcatgctttgatgtacttactaactaaaatgccaa
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I

a score=7334128.000000
s hg38.chr6_GL000254v2_alt  1365521 824 +   4827813 ggataactttctttaaatcaat-aggtcctaaattttgtcatgctgtca-gagcacccacacatagacatttaacttagcttttatgtagattaaacccctacattagaagagtttacaacaaagatggtgcattcttccttttgctttctgaggacacctactctgtatctgagtaactttcaataaactatctccttctcactgcactctgtgactcacctttaattccttcctgtgcaagatccaagaa-tactcttttggggtcggg-atcgggacctg-tttttctgg-taacagtttctccaacaaatcaaagccttgag-------------aaa-----aaaaaaatagg--tagggtg-ggtggtatggtatagaagaacagagaataatgagacataagaagcaattgcaatgtgtggaccttctctagcttctgtttcagacag-accaattgaaaaagacaagacagatatttgaatatgcattgagtgtttagcaaaattagag-aactgttgttaattttgttagtgtgagaatagcatggctttatgtt-ttttaaaaaccctattct--gtgaaag-atgcatgctgaactatttaactgtgaaattgtatgtaaaggatttgcttttacaatcctccagAGatgagtttataatgatataaatgatgtgataaataaatcaatggaggagaggaggcaaaatctctc----ctgcagaagaactccaaataaggtaggtagatactttgtccttaaaggaacagcat--taactccctcttct-ggaagtgtgaa-ttcttgatatcatgtaatgaaaatggtacctcacttgtggctttcctccccc-
s panTro5.chr6             30238910 824 + 175400573 ggataactttctttaaatcaat-aggtcctaaattttgtcatgctgtca-gagcacccacacatagacatttaacttagcttttatgtagattaaacccctacattagaagagtttacaacaaagatggtgcattcttccttttgctttctgaggacacttactctgtatctgagtaactttcaataaacgatctccttctcactgtactctgtgactcacctttaattccttcctgtgcaagatccaagaa-tactcttttggggtcggg-atcgggacctg-tttttctgg-taacagtttctccaacaaatcaaagccttgag-------------aaa-----aaaaaaatagg--tagggtg-ggtggtatgttatagaagaacagagaataaagagacataagaagcaattgcaatgtgtggaccttctctagcttctgtttcagacag-accaattgaaaaagacaagacagatatttgaatatgcattgagtgtttagcaaaattagag-aactgttgttaattttgttagtgtgagaatagcatggctttatgtt-ttttaaaaaccctattct--gtgaaag-atgcatgctgaactatttaactgtgaaattgtatgtaaaggatttgcttttacaattctccagAGatgagtttataatgatataaatgatgtgataaataaatcaatggaggagaggaggcaaaatctccc----ctgcagaagaactccaaataaggtaggtagatactttgtccttaaaggaacagcat--taactccctcttct-ggaagtgtgaa-ttcttgatatgatgtaatgaaaatggtacctcacttgtggctttcctccccc-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30469449 823 + 173848474 ggataactttctttaaatcaat-aggtcctaaattttgtcatgctgtca-gagcacccacacatagacatttaacttagcttttatgtagattaaacccctacattagaagagtttacaacaaagatggtgcattcttccttttgctttctgaggacacttactctgtatctgagtaactttcaataaactatctccttctcactgcactctgtgactcacctttaattccttcctgtgcaagatccaagaa-tactcttttggggtcggg-atcgggacctg-tttttctgg-taacagtttctccaacaaatcaaagccttgag--------------aa-----aaaaaaatagg--tagggtg-ggtggtatgttatagaagaacagagaataaagagacataagaagcaattgcaatgtgtggaccttctctagcttctgtttcagacag-accaattgaaaaagacaagacagatatttgaatatgcattgagtgtttagcaaaattagag-aactgttgttaattttgttagtgtgagaatagcatggctttatgtt-ttttaaaaaccctattct--gtgaaag-atgcatgctgaactatttaactgtgaaattgtatgtaaaggatttacttttacaatcctccagAGatgagtttataatgatataaatgatgtgataaataaatcaatggaggagaggaggcaaaatctccc----ctgcagaagaactccaaataaggtaggtagatactttgtccttaaaggaacagcat--taactccctcttct-ggaagtgtgaa-ttcttgatatgatgtaatgaaaatggtacctcacttgtggctttcctccccc-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     176022 842 +   2037526 ggataac-ttctttaaatcaat-aggtcctaaattttgtcatgctgtcaggagcacccacacatagacatttaacttagcttttatgtagattaaacccctacattagaagagtttacaacaaagatggtgcattcttccttttgctttctgaggacacctactctgtatctgagtaactttcaataaactatctccttctcactgcactctgtgactcacctttaattccttcctgtgcaagatccaagaattactcttttggggtcggg-atcgggacctgttttttcTGGTTAAcagtttctccaacaaatcaaagccttgga-----------gaaaa-----aaaaaaataggcttagggtgaggtggtatgttatagaagaacagagaataaagagacaaaagaagcaattgcaatgtgtggaccttctctagcttctgtttcagacagaaccaattg-aaaagacaagacagattattgaatatgcattgagtgtttagcaaaattagagaaactgttgttaattttgttagtgtgagaatagcatggctttatgttattttaaaaaccctatttctggtgaaag-atgcatgctgaactatttaactgtgaaattgtatgcaaaggatttgcttttacaatcctccagagatgagtttataaggatataaatgatgtgataaataaatcaatggaggagaggaggcaaaatctcccccctctgcagaag-actccaaataaggtaggtagatactttgtccttaaaggaacagcagcataactccctcttctgggaagtgtgAATTTcttgatatgatgtaatgaaaatggtacctcacttgtggcttt-ctccccc-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74845594 818 + 122973662 ggataactttctttaaatcaacaaagtactaaattttgtcatgctgtca-gagcacccacacatagacatttaacttagcttttatgtagattaaacccctatattagaagagtttacaacaaagatagtgcattcttccttttgctttctgaggacacctactctgtat-tgagtaactttcaatgaactatctccttctcactgcactctgtgactcacctttaattccttcctgtgcaagatccaagaa-tactcttttgaggtcagg-atcgggacctg-tttttctgg-taacagtttctccaacaaatcaaaggcttgag--------------aa-----aaaaaaatagg--tagggtg-ggtggtatgttatagaagaacagaaaataaagagacac---aagcaattgcaatgtgtggaccttctctagattctgtttcagacag-accaattgaaaaagacaagagagagatttgaatatgcattgagtatttggcaaaattagag-aactgttgttaatattgttggtgtgagaatagaatggctttatgtt-ttttaaaaactctattct--gtgaaag-atgcatgctaaactatttaactgtgaaattgtat-taaaggatttgcttttacaatcctccagAGatgagtttataatgatataaatgatgtgataaataaatcaatagaggagaggaggccaaatctccc----ctgcagaagaactccaaataaggcaggtagatactttgtccttaaagggagagcat--taactccctcttct-ggaagtgtgaa-ttcttgatatgatgtaaggaaaatggtacttcacttgtggctttcct-ctcc-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30702050 788 + 172585720 ggataactttcttcaaatcaacaaagtactaaattttgtcatgctgtca-gagcacccacacatagacatttaacttagcttttatatagattaaacccctatattagaagagtttataacagagatggtgcattcctccttttgctttctgaggacacctactctgtatctgagtaactttcaataaactatgtccttctcactgtattctgtgactcacctttaactccttcctgtgcaagatccaagaa-tacttttctggggtcggg-atcaggacccg-tttttctgg-taacagtttctccaacaaatcaaaggctcgagaaa------------a-----aaaaacatagg--tagggtg-ggtggtatgttatagaagaacagagaataaagagacataagaagcaattgcaatgtgtggaccttctctagattctgtttcagacag-accagttgaaaaagacaagagagagatttgaatatgcattgagtatttagcaaaattagag-aactgttgttaattttgttagtgtgagaatagcatggctttatgtt-ttttaaaaaccctattct--gtgaaagaatgcatgctgaactatttaactgt--------------------------------------gagatgagtttataatgatataaatgatgtgataaataaatcaatggaggagaggaggcaaaatctccc----ctgcagaagaactccaaacaaggtaggtaaatgctttgtccttaaagggagagcat--taactccctcttct-gcaagtgtgaa-ttcttgatatgatgtaatgaaaatgatacttcacttgtggctttcct-cccc-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30001628 791 - 170955103 ggataactttcttcaaatcaacaaagtactaaattttgtcatgctgtca-gagcacccacacatagaca-ttaacttagcttttatatagattaaacccctatattagaagagtttacaacagagacggtgcattcctcattttgctttctgaggacacctactctgtatctgagtaactttcaataaacgatgtccttctcactgtattctgtgactcacctttaactccttcctgtgcaagatccaagaa-tactcttttggggtcggg-atcaggacccg-tttttctgg-taacagtttctccaacaaatcaaaggctcgagaaa--------aaaaa-----aaaaacatagg--tagggtg-ggtggtatgttatagaagaacagagaataaagagacataagaagcaattgcaatgtgtggaccttctctagattctgtttcagacag-accagtggaaaaagacaagagagagatttgaatatgcattgagtatttagcaaaattagag-aactgttgttaattttgttagtgtgagaatagcatggctttatgtt-ttttaaaaaccctattct--gtgaaagaatgcatgctgaactatttaactgt--------------------------------------gagatgagtttataatgatataaatgatgtgataaataaatcaatggaggagaggaggcaaaatctccc----ctgcagaagaactccaaacaaggtaggtaaatactttgtccttaaagggagagcat--taactccctcttct-gcaagtgtgaa-ttcttgatatgatgtaatgaaaatgatacttcacttgtggctttcct-cccc-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     228265 794 +   1495729 ggataactttcttcaaatcaacaaagtactaaattctgtcatactgtca-gagcacctacacatagacatttaacttagcttttatatagattaaacccctatattagaagagtttacaacagagatggtgcattcctccttttgctttctgaggacacctactctgtatctgagtaacttgcaataaactatgtccttctcactgtattctgtgactcacctttaactccttcctgtgcaagatccaagaa-tactcttctggggtcggg-atcaggacctg-tttttctgg-taacagtttctccaccaaatcaaaggctcgagaaaaac--aacaaaaa-----aaaaacatagg--tagggtg-ggtggtatgttatagaagaacagagaataaagagacataagaagcaattgcaatgtgtggaccttctctagattctgtttcagacag-accagttgaaaaagacaagagagagatttgaatatgcattgagtatttagcaa----agag-aactgttgttaattttgttagtgtgagaatagcatggctttatgtt-ttttaaaaaccctattct--gtgaaagaatgcatgctgaactatttaactgt--------------------------------------gagatgagtttataatgataaaaataatgtgataaataaatcaatggaggagaggaggcaaaatctccc----ctgcagaagaactccaaataaggtaggtagatactttgtccttaaagggacagcat--taactccctcttct-gcaagtgtgaa-ttcttgatatgatgtaatgaaaatggtacttcacttgtggctttcct-cctc-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     350261 800 -    863181 ggataactttcttcaaatcaacaaagtactaaattttgtcatgctgtca-gagcacccacacatagacatttaacttagcttttatatagattaagcccctatattagaagagtttacaacagagatggtgcattcctccttttgctttctgaggacacctactctgt-tctgagtaactttcaacaaactatgtccttctcactgtactctgtgactcacctttaactccttcctgtgcaagatccaagaa-tactcttctggggtcgggaatcaggacctg-tttttctgg-taacagtttctccaacaaatcaaaggctcgagaaaaacaaaacaaaaa-----aaaaacatagg--tagggtg-ggtggtatgttatagaagaacagagaataaagagacataagaagcaattgcaatgtgtggaccttctctagattctgtttcagacag-accagttgaaaaagacaagagagagatttgaatatacgttgagtatttagcaaaattagag-aactgttgttaattttgttagtgtgagaatagcatggctttatgtt-ttttaaaaaccctattct--gtgaaagaatgcatgctgaactatttaactgt--------------------------------------gagatgagtttataatgataaaaatgatgtgataaataaatcaatggaggagaggaggcaaactctccc----ctgcagaaaaactccaaataaggtaggtagatactttgtccttaaagggagagcat--taactccctcttct-gcaagtgtgaa-ttcttgatatgatgtaatgaaaatggtacttcacttgtggctttcct-cctc-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29401092 788 -  71996105 ggataactttcttcaaatcaacaaagtactaaattttgtcatgctgtca-gagcacccacacatagaca-ttaacttagcttttatatagatttaacccctatattagaagagtttacaacagagatggtgcattcctccttttgctttctgaggacacctattctgtatctgagtaactttcaataaactatgtccttctcactgtactctgtgactcacctttaactccttcctgtgcaagatccaagaa-tactcttttggggtcggg-atcaggacccg-tttttctgg-taacagtttctccaacaaatcaaaggcttgag-----------aaaaa-----aacaccatagg--tagggtg-ggtggtatgttatagaagaacagagaataaagagacataagaagcaattgcaatgtgtggaccttctctagattctgtttcagacag-accaattgaaaaagacaagagagagatttgaatatgcattgagtatttagcaaaattagag-aactgttgttaattttgttagtgtgagaatagcatggctttatgtt-tttttaaaaccctattct--gtgaaagaatgcgtgctgaactattttaccgt--------------------------------------gagatgaggttataatgatataaatgatgtgataaataaatcaatggaggagaggaggcaaaatctccc----ctgcagaagaactccaaataaggtaggtagatactttgtccttaaaggaagagcat--taactcccccttct-gcaagtgtgaa-ttcttgatatgatgtaatgaaaatggtacttcagttgtggctttcct-cccc-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     181967 788 -    735854 ggataactttcttcaaatcaacaaagtactaaattttgtcatgctgtca-gagcacccacacatagaca-ttaacttagcttttatatagattaaacccctatattagaagagtttacaacagagatggtgcattcctccttttgctttcggaggacacctactctgtatctgagtaactttcaataaactatgtccttctcactgtactctgtgactcacctttaactccttcctgtgcaagatccaagaa-tactcttttggggtcggg-atcaggacccg-tttttctgg-taacagtttctccaacaaatcaaaggcttgaga----------aaaaa-----aaaaacatagg--tagggtg-ggtggtatgttatagaagaacagagaataaagagacataagaagcaattgcaatgtgtggaccttctctagattctgtttcagacag-accaattgaaaaagacaagagagagatttgaatatgcattgagtatttagcaaaattagag-aactgttgttaattttgttagtgtgagaatagcatggctttatgtt-ttttaaaaaccctattct--gtgaaagaatgcatgctgaactatttaactgt--------------------------------------gagatgagtttataatgatataaatgatgtgataaataaatcagtggaggagggggggcaaattttccc----ttgcag-aggacttccaattaggttggttggttctttttccttaaagggagagcat--taactccctcttct-ggaagtgtgaa-ttcttgatatgatgtaatgaaaatggtacttcacttgtggctttcct-cccc-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     138768 790 -   1829203 ggataactttctttaaatcaacaaagtactaaattttgtcatgctgtca-gagcacccacacatagacatttaactgagcttttatatagattaaacccctatattagaagagtttacaacagagatggtgcattcttccttttgctttctgagcacacctactctgtatctgagtaactttcaataaactatgtccttctcactgtactctgtgactcacctttaactccttcctgtgcaagatccaagaa-tactcttttggggtcgga-atcaggacccg-tttttctgg-taacagtttctccaacaaatcaaaggctcgagaa---------aaaaa-----aaaaacatagg--tagggtg-ggtggtatgttatagaagaacagagaataaagagacataagaagcaattgcaatgtgtggaccttctctagattctgtttcagacag-accggttgaaaaagacaagagagagatttcaatatgcattgagtatttagcaaaattagag-aactgttgttaattttgttagtgtgagaatagcatggctttatgtt-ttttaaaaaccctattct--gtgaaagaatgcatgctgaactatgtaactgt--------------------------------------gagatgagtttataatgataaaaatgatgtgataaataaatcaatggaggagaggaggcaaaatctccc----ctgcagatgaactccaaataaggtaagtagatactttg-ccttaaagggagagcat--taactccctcttct-ggaagtgtgaa-ttcttgatatgatgtaatgaaaatggtacttcacttgtggctctcct-cccc-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30318646 784 + 171630274 ggataacttcctttaaatcagcaaagtactaaattttgtcatgctgtca-gaacacccacacgtagaca--taacttagctt----------------------ttagaagagtttacagcagagatggtgcattcttccttttgctttctgaggacacctactctgtatctgagtaactttcaataaactatctccttctcacttcactctgcgactcacctttaattccctcctgtgcaata------------tcttttgggtttggg-atcagaaccca-tttttctgg-taacagtttctccaacaaatcaaaggcttcag---------------a-----aaaaaaatagg--tgagacg-ggtggtatgtt-tagaagaacagaaaataaaaagacataagaagcaattgcaatgtgtggactttctctaaattctgtttcagacag-accaattgaaaaagactaaagaga--tttgaatatgctttgagtacttagtaaaattagag-aactgttgttaattttgttggtgtgagaatagcatgattttatgtt-ttctaaaagccctattct--gtgaaag-gtgcatgctgaactatttaACTGTGAAATTGTAGGTAAAGGATTTGATTTTACAATCCTCCAGAGatgagtttataatgatatcaatgatgtgataaataaatcaatggaggagaggaagcaaaatctccc----ctgaagaagaactccaaataaggtaggtaggtagtctgtccctaaagggaaagcat--taactccttcttct-ggaagtgtgaa-ttcttgacatgatgtaatgaaaatggtacttcacttgtagttttcct-cccc-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           144201 782 +    515838 ggataactttctttaaatcaacaaagtactaaattttgtcatgctgtca-gagcacccacatgtagaca--taacttagctt----------------------ttagaatagtttacagtaaagacagtgcattcctccttttgctttcggaggacacctactctgtatctgagtaactttcaataaactatctccttctcactgcgctctgcgactcacctttaattccttcctgtgcaagatccaaaaa-tcttcttttgggatcagg-atcagaaccca-tttttctgg-taacagtttctccaacaaatcaaaggcttcag--------------aa-----aaaaaaatagg--tgggaca-ggtggtatgtt-tagaagaacaaa----gaagagacataagaagcaattgcaatgtgtggaccttctctagattctgtatcagacag-accaactgaaaaagacaagagaga--tttgaatatgcattgagtactcagtaaaattagag-aactgtggttaattttgttggtgtgggaatagcatggttttatgtt-ttctaaaaaccctattct--gtgaaag-gtgcatgctg---------actgtgaaattgtatgtaaaggatttgcttttacaatcctcgagagatgagtttataatcatatcaatgatgtgataagtaaatcaatggaggagagaaggcaaaatctccc----ctgaagaagaactccaaataaggtaggtagagagtctgtccttaaagggaaagcat--caactccTTCTTCT-GGAagcgtgaa-ttcttgacacgatgtaat-aaaatggcacttcacttgtggttttcct-cccc-
i saiBol1.JH378341         I 308 C 0
s cebCap1.NW_016107755v1     685137 789 -   1771730 ggataactttctttaaatcaacaaagtactaaattttgtcatgctgtca-gagcacccacacgtagaca--taacttagctt----------------------ttagaagagtttacagcaaagatggtgcattcttccttttgctttctgaggacacctactctgtatctgagtaactttcaataaactatctccttctcacttcactctgcaactcacctttaattccttcctgtgcaagattcaagaa-tcctcttttggggtcggg-atcagaacccg-tttttctgg-taacagtttctccaacaaatcaaa-gcttcag--------------aaaaaacaaaaaaatagg--tgagacg-ggtggtatgtt-tagaagaacagaaaataaagagacataagaagcaattgcaatgtgtggactttctctaa-------ttgaaaaag-accaattgaaaaggacaagagaga--tttgaatatgcattgagtacttagtaaaattagag-aactgttgttaattttgttggtgtgagaatagcatggttttatgtt-ttctaaaaaccctattct--gcaaaag-gtgcatgctgaactatttaactgtgaaattgtaggtaaaggatttgcttttacaatcctctagAGatgagtttataatgatatcaatgatgtgataaataaatcaatggaggagaggaggcaaaatctccc----ctgaagaagaactccaaataaggtaggtagatagtctgtcctt-aagggagagcat--taactc---cttct-ggaagtgtgaa-ttcttgacatgatgtaatgaaaatggtacttcacttgtagttttcct-cccc-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     248632 781 -    383796 ggataactttctttaaatcaacaaagtactaaattttgttctgctgtca-gagcacccacatgtagaca--taacttagctt----------------------ttagaagagtttacagcaaagatggtgcattcctccttttgctttctaaggacacctactctgtatctgagtaattttcaataaacgatctccttctcacttcactctgtgactcacctttaatttcttcctgtgc----------------tcttttgaggtcagg-atcagaacaca-tttttctgg-taacagtttctccaacaaatcaaaggcttcag---------------a-----aaaaaaatagg--tgggacg-ggtggtatgtt-tagaagcacagagaataaagagacataagaagtaattgcaatgcatggaccttctctagattctgtttcagacag-atcaattgaaaaagacaagagaga--tttgaatatgcattgagtacttagtaaaattagag-aactgttgttaattttgttggtgtgagaatagcatggttttatgtt-ttctaaaaaccctgttct--gtgaaag-gtgcatgctgaactatttaactgtgaaactgtatgtaaaggatttgattttacaatcctccagAGatgagtttataatgatatcaatgatgtgataaataaatcaatggaggagaggtggcaaaatctccc----ccaaagaagaactccaaataaggtaggtagatagtctgtccttaaagggagagcat--taactcattcttct-ggaagtgtgaa-atcttgacatgatgtaatgaaaatggtacttcacttgtggttttcct-ctccc
i aotNan1.NW_018496904v1   C 0 I 2288
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I

a score=236807.000000
s hg38.chr6_GL000254v2_alt  1366345 56 +   4827813 cgaatccataacctc--tacttattatg----------aaaaaaaaaaaaa---acaaaaaaaaaacaccg
s panTro5.chr6             30239734 47 + 175400573 cgaatccataacctc--tacttattaag----------aaaaaaaaaaaaa---a---------aacaccg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30470272 43 + 173848474 cgaatccataacctc--tacttattatg----------aaaaaaaaaa----------------aacaccg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     176864 49 +   2037526 cgaatccataacccc--tacttattatg----------aaaaaaaaaaaaa---aaa-------accacca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74846412 44 + 122973662 caaatccataacccc--tacttattatg----------aaaaaaaaaaa---------------aacactg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30702838 40 + 172585720 caaatccataacccc--tacttattatg--------------------aaa---acaa------aacaccg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30002419 45 - 170955103 caaatccataacccc--tacttattatg---------------aaaacaaa---ataa------aacaccg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     229059 54 +   1495729 caaatccataacccc--tacttattatgaaaa------aaaacaaaacaaa---acaa------aacaccg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     351061 52 -    863181 caaatccataacccc--tacttattatg--aa------aaaaaaaaacaaa---acaa------aacaccg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29401880 50 -  71996105 caaatccataacccc--tacttattatg----------aaaacaaaacaaa---acaa------aacaccg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     182755 50 -    735854 caaatccataacccc--tacttattatg----------aaaacaaaacaaa---acaa------aacaccg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     139558 60 -   1829203 taaatccataacccc--aacttattatgaaaacaaaacaaaacaaaacaaa---acaa------aacaccg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30319430 55 + 171630274 catatccataacccctgatcttattatg----------aaaaaaaaaaaaacaaaaaa------cccaccg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           144983 41 +    515838 catatccataactcc------tcttatg----------aaagaaaaaaaaa--------------acacct
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     685926 51 -   1771730 cgtatccataacccc-tatctcactatg----------aaaaaaaaaaaca---aaaa------actgccg
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464  5 +  18854210 I
e aotNan1.NW_018496904v1     249413 2288 -    383796 I

a score=403229.000000
s hg38.chr6_GL000254v2_alt  1366401 41 +   4827813 aattccaatagaggaacattcta-taaaatacctaactagta
s panTro5.chr6             30239781 41 + 175400573 aattccaatagaggaacattcta-taaaatacctaactagta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30470315 41 + 173848474 aattccaatagaggaacattcta-taaaatacctaactagta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     176913 42 +   2037526 aattccaatagaggaacattctattaaaatacctaactagta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74846456 41 + 122973662 aattccaatagagtaaaattcta-taaaatacctaactagta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30702878 41 + 172585720 aattctaacagaggaacattcta-taaaatacctaactagta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30002464 41 - 170955103 aattctaacagaggaacattcta-taaaatacctaactagta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     229113 41 +   1495729 aattctaacagaggaacattcta-taaactacctaactagta
i macNem1.NW_012012100v1   C 0 I 5
s cerAty1.NW_012002535v1     351113 41 -    863181 aattctaacagaggaacattcta-taaactacctaactagta
i cerAty1.NW_012002535v1   C 0 I 11
s chlSab2.chr17            29401930 41 -  71996105 aattctaacagaggaacattcta-taaaatacctaactagta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     182805 41 -    735854 aattctaacagaggaacattcta-taaaatacctaactagta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     139618 41 -   1829203 aattctaacagaggaacattcta-taaaatacctaaccagta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30319485 40 + 171630274 aattccaata-aggaacgttcta-caaaatacctaactagta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           145024 41 +    515838 aattccaatagaggaacattcta-caaaacacctaactagtg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     685977 41 -   1771730 aattccaatagaggaacattcta-caaaatgcctaactagta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     251701 41 -    383796 aattccaatagaggaacattcta-taaaatacctaactagta
i aotNan1.NW_018496904v1   I 2288 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464  5 +  18854210 I

a score=47595.000000
s hg38.chr6_GL000254v2_alt  1366442 6 +   4827813 ttcctc
s panTro5.chr6             30239822 6 + 175400573 ttcctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30470356 6 + 173848474 ttcctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     176955 6 +   2037526 ttcctc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74846497 6 + 122973662 ttcctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30702919 6 + 172585720 ttcctc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30002505 6 - 170955103 ttcctc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     229159 6 +   1495729 cttcaa
i macNem1.NW_012012100v1   I 5 C 0
s chlSab2.chr17            29401971 6 -  71996105 ttcctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     182846 6 -    735854 ttcctc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     139659 6 -   1829203 tttctc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30319525 6 + 171630274 ttcctc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           145065 6 +    515838 ctcctc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     686018 6 -   1771730 ttcctc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     251742 6 -    383796 ttcctc
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464 5 +  18854210 I
e cerAty1.NW_012002535v1     351154 11 -    863181 I

a score=20830031.000000
s hg38.chr6_GL000254v2_alt  1366448 2197 +   4827813 aataacgtctaggtcatcaaaaacaagg-aaaatctgaggaattgtcacagccaagaggagcctaaggaggcatgacaaccccatgtaatagggtatcttgaatgggaccttggagtagaaaaatattattaggtaaaactcaaggacacctgagtaatgtatgacttttggttaaaaataatgcatcaatattggttcaataattgtaagaaatgaaccatactaatgttagatgttaataacaggaga----------------------------aacAActtctcaattttcctgtagttaaaactgttctagaactgaagtcta--ttttttaaaattctcctggaaaaa-agtggaaacatatgaaatatgatggacaaatgttagtaattattgaatgtgatgatggataatgagaattcattatataattctgtttttgtgtatttgaagttttctataatggaaagttTGAggctgggcacagtggctcaaacctataatcccagcactttgggaggccaagagttcaagaccagcctgggcaatgtagtgagaccccatctct---------accaaaaaacagaagaattagccaggtgtggtgggcttgcacctgtagtcctagctactcaggaggctgaggtgagaggatcacttgagcccagaaggccaaggctgcagtgagccatg---atgtcattgtactccagtctaggtgacagagagaaaccttgtctcc-aaaaataaaaaataaaaaaaGTTTGAACAAGAAATAAAGAAATATGGAGATAAGGATAAGAAGAAGCTATTTAAAGCA-CGAGAGTAGCTG---Cttttttaaattatggtta-aaaaaatatataat-aaaatttaccattttgcc---atttttaagtgtatagttctatgacattaagtatattcatgctgtgtaaccatcaccaccctccatctccagaactttttcatcttcccaaact-aaatgctaggtctattaagcaacatctcctcactctctcctcctccccagcccctgataacctccattctacattctgtctatgaatcttactaaactaggtgaatcatgtaagtggattcatacaatatttttccttttcagtctgatttatttaatctagcttcatgtcttcaaggttcatacataatacaggaaaataatttccttccttcttctgaaaaatattccactgtatggatctaccatactttgttca----tccatcgatggatgtatactctgttgc--ttctaccttttggcagttgtgaataatgttgttataaacatgatgtacaaatatctgcttggtctctgctttaacttcttttgggtctgtacccagaagaggaattgctggatcatatgtcaattctatgtttaattttttgaagaacAAAAAGTGGCCGCTTCTACAAAACAGAAATTTTCAGATTAGGAGATGTGGGAC-AGGGAAAAATTCCTGTCTCTGAAAAGTTA----------AGAGTTTTCACTATAAGCTTTGTAGAACCATTTTTAAATAATATATGATAAAAATGAAGTAAAGTATGCAATAAAACTCATCTTGTGCTAAGTACTGGAGATACATGGAGGGAGCCCTCAGTCCTCTGGGGGAAGAACCTGGTTATAGAACAGTGTGATCACAGGTGCAACACAGAGAAGACTCCAGGGGCAAGCACAGAAAATAGCCATCAAGGGAGATTCTTTGCACGCCATGCAGAAGTGCCCTACAGGAGGTGACGTGGGAGTGAAGGAGGAAAATATGACATTCTGAGTTGGAGAATTGGAAGATTAAACTTGGAATGATGTCAGCACTGAGATTCTGGGATCATATTGTACAACTGGCCCCATCTCAGCACTAACACTGTGAAATCTTACCTTTCTTATGTCTTCAAATTGTGGCCCTATATTTAGCTTCTATATCTTTCTTTGACTAAATCTCAAAACTAAAATTGGTCCTGATTCCAGGGGAGGTGTTTCTCTGACTCCTCTCTTTTGAATCTCATAGCCTGACATTTTCTCTTCATCTTGAAGACCATATTCAGGAGGGACCCTAGGAACTCTGTATCTCAGCATGTGAGGCTTCAGGCCAAGGGGTGCTAATTTGATTCTGAAAGATCT--TATCTGCCTCCAGCGCCATAAGGTCCTGATGAAATGTCCAGCATCTTTGTGGAAATTCAAGTGTCTCCATACAGCATTATATGTCTTGGAGATTATGTAtat
s panTro5.chr6             30239828 2194 + 175400573 aataacgtctaggtcatcaaaaacaagg-aaaatctgaggaattgtcacagccaagaggagcctaaggaggcatgacaaccccatgtaatagggtatcttgaatgggaccttggagtagaaaaatattattaggtaaaactcaaggacacctgagtaatgtacgacttttggttaaaaataatgcatcaatattggttcaataattgtaagaaatgaaccatactaatgttagatgttaataacaggaga----------------------------aacAActtctcaattttcctgtagttaaaactgttctagaactgaagtcta--ttttttaaaattctcctggaaaaa-agtggaaacatatgaaatatgatggacaaatgttaataattattgaatgtgatgatggataatgagaattcattatataattctgtttttgtgtatttgaagttttctataatggaaagttTGAggctgggcacagtggctcaaacctataatcccagcactttgggaggccaagagtttaagaccagcctgggcaatgtagtgagaccccatttct---------accaaaaaacagaaaagttagccaggtgtggtgggcttgcacctgtagtcctagctactcagtaggctgaggtgagaggatcacttgagcccagaaggccaaggctgcagtgagccatg---atgtcattgtactccagtctaggtgacagagtgaaaccttgtctcc-aaaaataaaaaataaaaaaaGTTTGAACAAGAAATAAAGAAATATGGAGATAAGGATAAGAAGAAGCTATTTAAAGCA-TTAGAGTAGCTG---Cttttttaaattatggtta-aaaa--tatataat-aaaatttaccattttgcc---atttttaagtgtatagttctatgacattaagtatattcatgctgtgtaaccatcaccaccctccatctccagaactttttcatgttcccaaact-aaatgctaggtctattaagcaacatctcctcactctctcctcctccc-agcccctgataacctccattctacattctgtctatgaatcttactaaactaggtgaatcatgtaagtggattcatacaaaatttttccttttcagtctgatttatttaatctagcttcatgtcttcaaggttcatacataatacaggaaaataatttccttccttcttctgaaaaatattccactgtatggatctaccacactttgttca----tccatcgatggatgtatactctgttgc--ttctaccttttggcagttgtgaataatgttgttataaacatgatgtacaaatatctgcttggtctctgctttaacttcttttgggtctgtacccagaagaggaattgctggatcatatgtcaattctatgtttaattttttgaagaacAAAAAGTGGCCGCTTCTACAAAACAGAAATTTTCAGATTAGGAGATGTGGGAC-AGGGAAAAATTCCTGTCTCTGAAAAGTTA----------AGAGTTTTCACTATAAGCTTTGTAGAACCATTTTTAAATAATATATGATAAAAATGAAGTAAAGTATGCAATAAAACTCATCTTGTGCTAGGTACTGGAGATACATGAAGGGAGCCCTCAGTCCTCTGGGGGAAGAACCTGGTTATAGAACAGTGTGATCACAGGTGCAACACAGAGAAGACTCCAGGGGCAAGCACAGAAAATAGCCATCAAGGGAGATTCTTTGCACGCCATGCAGAAGTGCCCTACAGGAGGTGACGTGGGAGTGAAGGAGGAAAATATGACATTCTGAGTTGGAGAATTGGAAGATTAAACTTGGAATGATGTCAGCACTGAGATTCTGGGATCATATTGTACAACTGGCCCCATCTCAGCACTAACACTGTGAAATCTTACCTTTCTTATGTCTTCAAATTGTGGCCCTATATTTAGCTTCTATATCTTTCTTTGACTAAATCTCAAAACTAAAATTGGTCCTGATCCCAGGGGAGGTGTTTCTCTGACTCCTCTCTTTTGAATCTCATAGCCTGACATTTTCTCTTCATCTTGAAGACCATATTCAGGAGGGACCCTAGGAACTCTGTATCTTAGCATGTGAGGCTTCAGGCCAAGGGGTGCTAATTTGATTCTGAAAGATCT--TATCTGCCTCCAGCGCCATAAGGTCCTGATGAAATGTCCAGCATCTTTGTGGAAATTCAAGTGTCTCCATACAGCATTATATGTCTTGGAGATTATGTAtat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30470362 2193 + 173848474 aataacgtctaggtcatcaaaaacaagg-aaaatctgaggaattgtcacagccaagaggagcctaaggaggcatgacaaccccatgtaatagggtatcttgaatgggaccttggagtagaaaaatattattaggtaaaactcaaggacacctgagtaatgtacgacttttggttaaaaataatgcatcaatattggttcaataattgtaagaaatgaaccatactaatgttagatgttaataacaggaga----------------------------aacAActtctcaattttcctgtagttaaaactgttctagaactgaagtcta--ttttttaaaattctcctggaaaaa-agtggaaacatatgaaatatgatggacaaatgttaataattattgaatgtgatgatggataatgagaattcattatataattctgtttttgtgtatttgaagttttctataatggaaagttTGAggctgggcacagtggctcaaacctataatcccagcactttgggaggccaagagttcaagaccagcctgggcaatgtagtgagaccccatctct---------accaaaaaacagaaaagttagccaggtgtggtgggcttgcacctgtagtcctagctactcagtaggctgaggtgagaggatcacttgagcccagaaggccaaggctgcagtgagccatg---atgtcattgtactccagtctaggtgacagagtgaaaccttgtctcc-aaaaat-aaaaataaaaaaaGTTTGAACAAGAAATAAAGAAATATGGAGATAAGGATAAGAAGAAGCTATTTAAAGCA-TTAGAGTAGCTG---Ctttttaaaattatggtta-aaaa-atatataat-aaaatttaccattttgcc---atttttaagtgtatagttctatgacattaagtatattcatgctgtgtaaccatcaccaccctccatctccagaactttttcatcttcccaaact-aaatgctaggtctattaagcaacatctcctcactctctcctcctccc-agcccctgataacctccattctacattctgtctatgaatcttactaaactaggtgaatcatgtaagtggattcatacaaaatttttccttttcagtctgatttatttaatctagcttcatgtcttcaaggttcatacataatacaggaaaataatttccttccttcttctgaaaaatattccactgtatggatctaccacactttgttca----tccatcgatggatgtatactctgttgc--ttctaccttttggcagttgtgaataatgttgttataaacatgatgtacaaatatctgcttggtctctgctttaacttcttttgggtctgtacccagaagaggaattgctggatcatatgtcaattctatgtttaattttttgaagaacAAAAAGTGGCCGCTTATACAAAACAGAAATTTTCAGATTAGGAGATGTGGGAC-AGGGAAAAATTCTTGTCTCTGAAAAGTTA----------AGAGTTTTCACTATAAGCTTTGTAGAACCATTTTTAAATAATATATGATAAAAATGAAGTAAAGTATGCAATAAAACTCATCTTGTGCTAGGTACTGGAGATACAT-AAGGGAGCCCTCAGTCCTCTGGGGGAAGAACCTGGTTATAGAACAGTGTGATCACAGGTGCAACACAGAGAAGACTCCAGGGGCAAGCAAAGAAAATAGCCATCAAGGGAGATTCTTTGCACGCCATGCAGAAGTGCCCTACAGGAGATGACGTGGGAGTGAAGGAGGAAAATATGACATTCTGAGTTGGAGAATTGGAAGATTAAACTTGGAATGATGTCAGCACTGAGATTCTGGGATCATATTGTACAACTGGCCCCATCTCAGCACTAACACTGTGAAATCTTACCTTTCTTATGTCTTCAAATTGTGGCCCTATATTTAGCTTCTATATCTTTCTTTGACTAAATCTCAAAACTAAAATTGGTCCTGATCCCAGGGGAGGTGTTTCTCTGACTCCTCTCTTTTGAATCTCATAGCCTGACATTTTCTCTTCATCTTGAAGACCATATTCAGGAGGGACCCTAGGAACTCTGTATCTTAGCATGTGAGGCTTCAGGCCAAGGGGTGCTAATTTGATTCTGAAAGATCT--TATCTGCCTCCAGCGCCATAAGGTCCTGATGAAATGTCCAGCATCTTTGTGGAAATTCAAGTGTCTCCATACAGCATTATATGTCTTGGAGATTATGTAtat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     176961 2196 +   2037526 aataacgtctaggtcatcaaaaacaagg-aaaatctgaggaattgtcacagccaagaggagcctaaggaggcatgacaaccccatgtaatagggtatcttgaatgggaccttggagtagaaaaatattattaggtaaaactcaaggacacatgagtaatgtacgacttttggttaaaaataatgcatcaatattggttcaataattgtaagaaatgaaccatactaatgttagatgttaataacaggaga----------------------------aacAACTTCTCAATTTTCCTGTAGTTAAAACTGTTCTAGAACTGAAGTCTA-TTTTtttaaaattctcctggaaaaa-agtggaaacatatgaaatatgatggacaaatgttaataattattgaatgtgatgatggataatgagaattcattatataattctgtttttgtgtatttgaagttttctataatggaaagttTGAggcttggcacagtggctcaaacctataatcccagcactttgggaggccaagagttcaagaccagcctgggcaatgtcgtgagaccccatctct---------accaaaaaaacagaaaattagccaggtgtggtgggcttgcacctgcagtcctagctactcaggaggctgaggtgagaggatcacttgagcccagaaggccaaggctgcagtgagccatg---atgtcattgtactccagtctaggtgacagagtg-aaccttgtctccaaaaaataaaaaataaaaaaaGTTTGAACAAGAAATAAAGAAATATGGAGATAAGGATAAGAAGAAGCTATTTAAAGCA-TTAGAGTAGCTG---Cttttttaaattatggtta-aaaa-atatatgat-aaaatttaccattttgcc---atttttaagtgtatagttctatgacattaagtatattcatgctgtgtaaccatcaccaccctccatctccagaactttttcatcttcccaaact-aaatgctaggtctactaagcaacatctcctcactctctcctcctccc-agcccctgataacctccattctacattctgtctatgaatcttacaaaactaggtgaatcatgtaagtggattcatacaatatttttccttttcagtctgatttatttaatctagcttcatgtcttcaaggttcatacataatacaggaaaataatttccttccttcttctgaaaaatattccattgtatggatctaccacactttgttca----tccatcaatggatgtatactctgttgc--ttctaccttttggtagttgtgaataatgttgttataaacatgatgtacaaatatctgcttggtctctgctttaacttcttttgggtctgtacccagaagaggaattgctggatcatatgtcaattctatgtttaattttttgaagaacAAAAAGTGGCCGCTTCTACAAAACAGAAATTTTCAGATTAGGAGATGTGGGAC-AGGGAAAAATTCCTGTCTCTGAAAAGTTA----------AGAGTTTTCACTATAAGCTTTGTAGAACCATTTTTAAATAATATATGATAAAAATGAAGTAAAGTATGCAATAAAACTCATCTTGTGCTAGGTACTGGAGATACATGGAGGGAGCCCTCAGTCCTCTGGGGGAAGAAGCTGGTTATAGAACAGTGTGATCACAGGTGCAACACAGAGAAGACTCCAGGGGCAAGCACAGAAAATAGCCATCAAGGGAGATGCTTTGCACGCCATGCAGAAGTGCCCTACAGGAGGTGACGTGGGAGTGAAGGAGGAAAATATGACATTCTGAGTTGGAGAATTGGAAGATTAAACTTGCAATGATGTCAGCACTGAGATTCTGGGATCATATTGTATAACTGGCCCCATCTCAGCACTAACACTGTGAAATCTTACCTTTCTTATATCTTCAAATTGTGGCCCTATATTTAGCTTCTATATCTTTCTTTGACTAAATCTCAAAACTAAAATTGGTCCTGATTCCAGGGGAGGTGTTTCTCTGACTCCTCTCTTTTGAATCTCATAGCCTGACATTTTCTCTTCATCTTGAAGACCATATTCAGGAGGGACCCTAGGAACTCTGTATCTCAGCATGTGAGGCTTCAGGCCAAGGGGTGCTAATTTGATTCTGAAAGATCT--TATCTGCCTCCAGCGCCATAAGGTCCTGATGAAACGTCCAGCATCTTTGTGGAAATTCAAGTGTCTCCATACAGCATTATATGTCTTGGAGATTATGTATAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74846503 2179 + 122973662 aataaagtctaggtcatcaaaaacaagg-aaaatctgaggaattgccacagccaagaggagcctaaggaggcctgaaaactctatgtaatagggtatcttgaatgggaccttggagtaaaaaaatattattaggtaaaacccaaggacacctgagtaatgtatgacttttggttaaaaataatgcatcaatattggttcaataattgtaagaaattaactatactaatgttagatgttaataacagcaga----------------------------aacaacttctcaatttctctgtagttaaaactgttctagaactgaagtcta--tttttaaaaaTTCTTCTggaaaaa-agtggaaac--atgaaacatgatggacaaatgttaataattatttaatgtgatgatggataatgagaattcattatatgattctgtttttgtgtatttgaagttttctataatggaaagttTGAggctgggcacagtggctcaaacctataatcccagcactttggtaggccaag------agaccagcctgggcaatgtagtgagaccctgtctct---------accaaagaacagaaaaattagccaggtgtggtgggcttgcacctgtagtcctagctactcaggaggctgaggtgagaggatcacctgagcccaggaggccaaggctgcagtgagccatgatcatgtcattgtactccagtctaggtgacagagtgaaaccttgtct----------aaaaaaaaaaaaaGTTTGAACAAGAAATAAAGAAATACGGAGATAAGGATAAGAAGAAGCCATTTATAGCA-TTAGAGTAGCTGCTTCtttttaaaaatatggttt-aaaa---atataat-aaaatttaccattttgcc---atgtttaagtgtatagttctatgacattaagtatattcatgctgtgtaaccgtcaccaccctccatctccagaactttttcatcttcccaaaat-aaatgctaggtctattgagcaacatctcctcactctctcctcctccc-agcccctgataacctccattcttcattctgtctatgaatcttactaaactaggtgaatcacgtaagtggattgatacaatatttttccttttcagtctgatttatttaatctagcttc--gtcttcaaggttcacacatattataggaaaataatttctttccttcttctgaaaaatattcccttgtatggatctaccacatgttgttca----tccattgatggatgtatactctgttgc--ttctatcttttggcagttgtgaataatgttgttataaacatgatgtacaaatatctgcttggtctctgctttaacttcttttgggtctgtatcccgaagaggaattgctggatcatatgccaattctatgtttaattttttgaagaaTAAAAAGTTGCCACTTCTACAAAACAGAAATTTTCAGGTTAGGAGATGTGGGACAAGGGAAAAATTCCTGTCTCTGAAAACTTA----------AGAGTTTTCACTATAAG-TTTGTAGAAACATTTTTAAATAATATATGATAAAAATGAAGTATAGTATGCAGTAAAACTCATTTTGTGTTAGGTACTGGAGATACATGGAGGGAGCCCTCAGTCCTCTGGGGAAAGAAGCTGGTTATAGAACAGCGTGATCACAGGTGCAACACAGAGAAGACTCC-GGGGCAAGCACAGAAAATAGCCATCAAGGGAGATGCTTTGCACGCCATGCAGAAGTGCCCTACAGGAGGTGACGTGGGAGTGAAGGAGGAAAAGATGACATTCTAAGTTGGAGAATTGGAAGATTAAACTTGGAATGATGTCAGCACTGAGATTCTGGGATCATATGGTACTATTGGCCCCATCTCAGTACTAATAGTGTGAAATCTTACCTTTCTTATGTCTTCAAATTGTGGCCCTATATTTAGCTTCTATATCTTTCTTTGACTGAATCTCAATACTAAAATTGGTCCTGATTCCAGAGGAGGTGTTTCTCTGACTCCTCTCTTTTGAATCTCATAGCCTGACATTTTCTCTTCATCTTGAAGACCACATTCAGGAGGCACCCTAGGAACTCTGTATCTCAGCATGTGAAGCTTCATGCCAAGGGGTGCTAATTTTATTCTGAAAGATCT--TATCTGCCTCCAGCGCCGTAAGGTCCTGATGAAATGTCCAGCATCTTTGTGGAAATTCAAGTGTCTCCATACAGGATTATATGTCTTGGAGATTATGTATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30702925 2182 + 172585720 aataacgtctaggtcttcaaaaacaaggaaaaatctgaggaattgtcacagccaagaggagcctaaggaggcatgacaacttcatgt-----tgtatcttgaatgggaccttggaggagaaaaatattattcggtaaaacccaaggacacctgagtaatgtatggtttttggttaaaaataatgcatcaatattggttcaataattgtaagaaatgaaccatactaatgctagatgttaataacaggaga----------------------------aacAACTTCTCAATTTTCCTGTAGTTAAAACTCTTCTGGAACTGAAGTCTA--TTTTTTAAAATTCTCCTggaaaaa-agtggaaacatatgaaacatgatagacaaatgttaataattattgaatgtgatgatggataatgagaagtcattatataattctgtttttgtgtatttgaagttttctaaaatggaaagttTGAggctgggcacagtggctcaaacctataatcccagcactttgggaggccaagagttcaacaccagcctgggcaacgtagcgagaccctgtctct---------actaaa-aacagaaaaattagccaggagtagtgggcttgcacctgtagtcctagctactcaggagactgaggtgagaggatcacttgagcccaggaggccaaggctgcagtgagccatgatcatgtcattgtactccagtctaggtgacagagtgaaaccttgtctcc---------aaaaaaaaaaaaGTTTGAACAAGAAATAAAGAAATATGGAGTTAAGGATAAGAAGAAGTTATGTAAAGCA-TTAGAGTAGCTGCTTCtttttaaaattatggtta-aaaa-atatataat-aaaatttaccattttgcc---atttttaagtgtacagttctgtgacattaagtatattcatgctgtgtaaccatcaccaccctccatctccagaactttttcatcttcccaaact-aaatgctatgtctattaagcaacaactcctcattctctcctcctccc-agcccc-ggtaacctccattctacattttgtctatgaatcttactaaactagttgaatcatataagtggattcatacaatatttttccttttcggtctgctttatttaatctagcttcatgtcttcaaggttcacacatattataggaaaataatttccttccttcttctgaaaaatattccattgtatggatctaccacattttgttca----tccctcgatgcatatatactctgttgc--ttctaccttttggcagttgcgaataatgttgttataaacatgatgtacaaatatttgcttggtctctgctttaacttcttttgggtatgtacccagaagaggaactgctggatcatatgtcaattcagtgtttaattttttgaagaaTAAAAAGTGGCTGCTTCTACAAAACAGAAATTTTCTGATTAGGAGATGTGGGAC-GGGGAAAAATTCCCGTCTCTGAAAACTTAGAGAAAATGTAGAGTTTTCACTATAAGCTTTGTAGAACCATTTTTAAATAA---------------AAATGAAGTATGCAATAACACTCATTTTGTGCTAGGTACTGGAGATACATGGAGGGAGCCCTCAGTCCTCTGGGGGAAGAAGCTGGTTATAGAACAGTGTGATCACAGGTGCAACACAGAGAAGACTCCAGGGGCAAGCACAGAAAATAGTCATCGAGGGAGATGCTTTGCACGCGATGCAGAAGTGCCCTGCAGGAGGAGACGTGGGAGTGAAGGAGGAAAAGATGACATTCTAAGTTGGAGAATTGGAAGATTAAACTTGGAATGATGTCAGCACTGAGATTCTGGGATCATATTGTACAATTGGCCCCATCTCAGCACTAACACTGTGAAATCTTACCTTTCTTGTGTCTTCAAATGGTGGCCCTATATTTAGCTTCTATATCTTTCTTTGACTGAATCTCAATACTAAAATTGGTTCTAATTCCAGGGGAGGTGTTTCTCTGAGTCCTCTCTTTTGAATCTCATAGCCTAACATTTTCTCTTCATCTTGAAGACCACATTCAGGAGGGACCCTAGGAACCCCGTATCTCAGCATGTGAGGCTTCAGGCCAAGGGGAGCTAATTTGATTCTGAAAGATCT--TATCTGCCTCCAGCGCCCTAAGGTCCTGAGGAAATGTCCAGCACCCTTGTGGAAATTCAAGTGTCTCCATACAGGATTATATGTCTTGGAGATTATGTGTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30002511 2190 - 170955103 aataacgtctaggtcttcaaaaacaaggaaaaatctgaggaattgtcacagccaagaggagcctaaggaggcatgacaactccatgtaatagggtatcttgaatgggaccttggaggagaaaaatattattcggtaaaacccaaggacacctgaataatgtatggtttttggttaaaaataatgcatcaatattggttcaataattgtaagaaatgaaccatactaatgctagatgtcaataacaggaga----------------------------aacAACTTCTCAATTTTCCTGTAGTTAAAACTCTTCTGAAACTGAAGTCTA--TTTTTTAAAATTCTCCTGGAAAAA-AGTGGAAACATATGAAACATGATGGACAAATGTTAATAATTATTGAATGTGATGATGGATAATGAGAAGTCATTATATAATTCTGTTTTTGTGTATTTCAAGTTTTCTAAAATGGAAAGTTTGAggctgggcacagtggctcaaacctataatcccagcactttgggaggccaagagttcaagaccagcctgggcaacgtagcgagaccctgtctct---------actaaa-aacagaaaaattagccaggtgtagtgggtttgcacctgtagtcctagctactcaggagactgaggtgagaggatcacttgagcccaggaggccaagactgcagtgagccgtgatcatgtcattgtactccagtctaggtgacagagtgaaaccttgtctcc-------aaaaaaaaaaaaaaGTTTGAACAAGAAATAAAGAAATATGGAGTTAAAGATAAGAAGAAGTTATTTAAAGCA-TTAGAGTAGCTGCTTCtttttaaaattatggtta-aaaa-atatataat-aaaatttaccattttgcc---atttttaagtgtacagttctgtgacattaagtatattcatgctatgtaaccatcaccaccctccatctccagaactttttcatcttcccaaact-aaatgctatgtctattaagcaacaactcctcattctctcctcctccc-agcccctggtaacctccattctacattttgtctatgaatcttactaaactagttgaatcatataagtggattcatacaatatttttccttttcggtctgatttatttaatctagcttcatgtcttcaaggttcacacatattatcggaaaataatttccttccttcttctgaaaaatatcccattgtatggatctactacattttgttca----tccctcgatgcatatatactctgttgc--ttctaccttttggcagttgcgaataatgttgttataaacatgatgtacaaatatttgcttggtctctgctttaacttcttttgggtatgt--ccagaagaggaactgctagatcatatgtcaattcagtgtttaattttttgaagaaTAAAAAGTGGCTGCTTCTACAAAACAGAAATTTTCAGATTAGGAGATGTGGGAT-AGGGAAAAATTCCTGTCTCTGAAAACTTAGAGAAAATGTAGAGTTTTCACTATAAGCTTTGTAGAACCACTTTTAAATAA---------------AAATGAAGTATTCACTAACACTCATTTTGTGCTAGGTACTGGAGATACATGGAAGGAGTCCTCAGTCCTCTGGGGGAAGAAGCTGGTTAAAGAACAGTGTGATCACAGGTGCAACACAGAGAAGACTCCAGGGTCAAGCACAGAAAATAGCCATCGAGGGAGATGCTTTGCACGCGATGCAGAAGTGCCCTACAGGAGGGGACGTGGGAGTGAAGGAGGAAAAGATGACATTCTAAGTTGGAGAATTGGAAGATTAAACTTGGAATGATGTCAGCACTGAGATTCTGGGATCATATTGTACAACTTGTCCCATCTCAGCACTAACACTGTGAAATCTTACCTTTCTTCTGTCTTCAAATGGTGGCCCTATATTTAGCTTCTATATCTTTCTTTGACTGAATCTCAATACTAAAATTGGTTCTAATTCCAGGGGAGGTGTTTCTCTGAGTCCTCTCTTTTGAATCTCATAGCCTAACATTTTCTCTTCATCTTGAAGACCACATTCAGGAGGGACCCTAGGAACCCCGTATCTCAGCTTGTGAGGCTTCAGGCCAAGGGGAGCTAATTTGATTCTGAAAGATCTTATATCTGCCTCCAGCGCCCTAAGGTCCTGAGGAAATGTCCAGCACCCTTGTGGAAATTCAAGTGTCTCCATACAGGATTATATGTCTTGGAGATTATGTGTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     229165 2188 +   1495729 aataacgtctaggtcttcaaaaacaaggaaaaatctgaggaattgtcacagccaagaggagcctaaggaggcatgacaactccatgtaatagggtatcttgaacgggaccttggaggagaaaaatattattcggtaaaagccaaggacacctgagtaatgtatggtttttggttaaaaataatgcatcaatattggttcagtaattgtaagaaatgaactatactaatgctagatgtcaataacaggaga----------------------------aacAACTTCTTAATTTTCCTGTAGTTAAAACTCTTCTGGAACTGAAGTCTA--TTTTTTAAAATTCTCCTGGAAAAA-AGTGGAAACATATGAAACATGATGTACAAACGTTAATAATTATTGAATGTGATGATGGATAATGAGAAGTCATTATGTAATTCTGTTTTTGTGTATTTGAAGTTTTCTAAAATGGAAAGTTTGAggctgggcacagtggctcaaacctataatcccagcactttgggaggccaagagttcaagaccagcctgggcaacgtagcgagactctgtctct---------actaaa-agcagaaaaattagccaggtgtagtgggtttgcacctgtagtcctagctactcaggagactgaggtgagaggatcacttgagcccaggaggccaaggctgcagtgagccatgatcatgtcattgtactccagtctaggtgacagagtgaaaccttgtctcc--------aaaaaaaaaaaaaGTTTGAACAAGAAATAAAGAAATATGGAGTTAAAGATAAGAAGAAGTTATTTAAAGCA-TTAGAGTAGCTGCTTCtttttaaaattatggtta-aaaa-atatataat-aaaatttaccattttgcc---atttttaagtgtacagttctgtgacattaagtatattcatgctgtgtaaccatcaccaccctccatctccagaactttttcatcttcccaaact-aaatgctatgtctattaagcaacaactcctcattctctcctcctccc-agcccc-ggtaacctccattctacattttgtctatgaatcttactaaactagttgaatcatataagtggattcatacaatatttttccttttcggtctgatttatttaatctagcttcatgtcttcaaggttcatacatattataggaaaataatttccttccttcttctgaaaaatattccattgtatggatctaccacattttgttca----tccctcgatgcatatatactctgttgc--ttctaccttttggcagttgcgaataatgttgttataaacatgatgtagaaatatctgcttggtctctgctttaacttcttttgggtatgtacccagaagaggaactgctggatcatatgtcaattcaatgtttaattttttgaagaaTAAAAAGTGGCCACTTCTACAAAACAGAAATTTTCAGATTAGGAGATGTGGGAC-AGGGAAAAATTCCTGTCTCTGAAAACTTAGAGAAAGTGTAGAGTTTTCACTATAAGCTTTGTAGAACCATTTTTAAATAA---------------AAATGaagtattcactaacactcattttgtgctaggtactggagatacaTGGAGGGAGCCCTCAGTCCTCTGGGGGAAGAAGCTGGTTATAGAACAGTGTGATCACAGGTGCAACATAGAGAAGACTCCAGGGGCAAGCACAGAAAATAGCTATCGAGGGAGATGCTTTGCACGCGATGCAGAAGTGCCCTACAGGAGGTGACGTGGGAGTGAAGGAGGAAAAGATGACATTCTAAGTTGGAGAATTGGAAGATTAAACTTGGAATGATGTCAACACTGAGATTCTGGGATCATATTGTACAATTGGCCCCATCTCAGCACTAACACTGTGAAATCTTACCTTTCTTGTGTCTTCAAATGGTGGCCCTATATTTAGCTTCTATATCTTTCTTTGACTGAATCTCAATACTAAAATTGGTTCTAATTCCAGGGGAGGTGTTTCTCTGAGTCCTCTCTTTTGAATCTCATAGTCTAACATTTTCTCTTCATCTTGAAGACCACATTCAGGAGGGACCCTAGGAACCCCATATCTCAGCATGTGAGGCTTCAGGCCAAGGGGAGCTAATTTGATTCTGAAAGATCT--TATCTGCCTCCAGCGCCCTAAGGTCCTGAGGAAATGTCCAGCACCCTTGTGGAAATTCAAGTGTCTCCATACAGGATTATATGTCTTGGAGATTATGTGTAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     351165 2189 -    863181 aataacgtctaggtcttcaaaaacaaggaaaaatctgaggaattgtcacagccaagaggagcctaaggaggcatgacaactccatgtaatagggtatcttgaacgggaccttggaggagaaaaatattattcggtaaaagccaaggacacctgagtaatgtatggtttttggttaaaaataatgcatcaatattggttcagtaattgtaagaaatgaactatactaatgctagatgtcaataacaggaga----------------------------aacAACTTCTTAATTTTCCTGTAGTTAAAACTCTTCTGGAACtgaagtcta--ttttttaaaattctcctggaaaaa-agtggaaacatatgaaacatgatgtacaaatgttaataattattgaatgtgatgatggataatgagaagtcattatgtaattctgtttttgtgtatttgaagttttctaaaatggaaagttTGAggctgggcacagtggctcaaacctataatcccagcactttgggaggccaagagttcaagaccagcctgggcaacgtagcgagactctgtctct---------actaaa-agcagaaaaattagccaggtgtagtgggtttgcacctgtagtcctagctactcaggagactgaggtgagaggatcacttgagcccaggaggccaaggctgcagtgagccatgatcatgtcattgtactccagtctaggtgacagagtgaaaccttgtctcc-------aaaaaaaaaaaaaaGTTTGAACAAGAAATAAACAAATATGGAGTTAAGGATAAGAAGAAGTTACTTAAAGCA-TCAGAGTAGCTGCTTCtttttaaaattatggtta-aaaa-atatataat-aaaatttaccattttgcc---atttttaagtgtacagttctgtgacattaagtatattcatgctgtgtaaccatcaccaccctccatctccagaactttttcatcttcccaaact-aaatgctatgtctattaagcaacaactcctcattctctcctcctccc-agcccctggtaacctccattctacattctgtctatgaatcttactaaactaattgaatcatataagtggattcatacaatacatttccttttcggtctgatttatttaatctagcttcatgtcttcaaggttcatacatattataggaaaataatttccttccttattctgaaaaatattccattgtatggatctactacattttgttca----tccctcgatgcatatatactctgttgc--ttctactttttggcagttgcgaataatgttgttataaacatgatgtacaaatatctgcttggtctctgcgttaacttcttttgggtatgtacccagaagaggaactgctggatcacatgtcaattcaatgtttaattttttgaagaaTAAAAAGTGGCCGCTTTTACAAAACAGAAATTTTCCGATTAGGAGATGTGGGAT-AGGGAAAAATTCCTGTCTCTGAAAACTTAGAGAAAGTGTAGAGTTTTCACTATAAGCTTTGTAGAACCATTTTTAAATAA---------------AAATGAAGTATGCAATAACACTCATTTTGTGCTAGGTACTGGAGATACATGGAGGGAGCCCTCAGTCCTCTGGGGGAAGAAGCTGGTTATAGAACAGTGTGATCACAGGTGCAACACAGAGAAGACTCC-GGGGCAAGCACAGAAAATAGCCATCGAGGGAGATGCTTTGCACGCGATGCAGAAGTGCCCTGCAGGAGGTGACGTGGGAGTGAAGGAGGAAAAGATGACATTCTAAGTTGGAGAATTGGAAGATTAAACTTGGAATGATGTCAACACTGAGATTCTGGGATCATATTGTACAATTGGCCCCATCTCAGCACTAACACTGTGAAATCTGACCTTTCTTGTGTCTTCAAATGGTGGCCCTATATTTAGCTTCTATATCTTTCTTTGACAGAATCTCAATACTAAAATTGGTTCTGATTCCAGGGGAGGTGTTTCTCTGAGTCCTCTCTTTTGAATCTCATAGTCTAACATTTTCTCTTCATCTTGAAGACCACATTCAGGAGGGACCCTAGGAACCCCGTATCTCAGCATGTGAGGCTTCAGGCCAAGGGGAGCTAATTTGATTCTGAAAGATCT--TATCTGCCTCCAGCGCCCTAAGGTCCTGAGGAAATGTCCAGCACCCTTGTGGAAATTCAAGTGTCTCCATACAGGATTATATGTCTTGGAGATTATGTGTAA
i cerAty1.NW_012002535v1   I 11 C 0
s chlSab2.chr17            29401977 2189 -  71996105 aataacgtctaggtctccaaaaacaaggaaaaatctgaggaattgtcacagccaagaggagcctaaggaggcatgacaactctatgtaatagggtatcttgaatgggaccctggaggagaaaaatattattcggtaaaactcaaggacacctgagtaatgtatggtttttggttaaaaataatgcatcaatattggttcaataattgtaagaaatgaaccatactaatgctagatgttaataacaggaga----------------------------aacAACTTCTCAATTTTCCTGTAGTTAAAACTCTTCTGGAACTGAAGTCTA--TTTTTTAAAATTCTCCTGGAAAAA-AGTAGAAACATATGAAACATGATGGACAAATGTTAATAATTATTGAATGTGATGATGGATAATGAGAAGTCATTATGTAATTCTGTTTTTGTGTATTTGAAGTTTTCTAAAATGGAAAGTTTGAggctgggcacagtggctcaaacctataatcccagcactttgggaggtcaagagttcaagaccagcctgggcaatgtagcaaaaccctgtctct---------actaaa-agcagaaaaattagccaggtgtagtgggtttgcacctgtagtcatagctactcaggagaccgaggtgagaggatcacttgagcccaggaggccaaggctgcagtgagccatgatcatgtcattgtactccagtctaggtgacagagtgaaactttgtctcc-----aaaaaaaaaaaaaaaaGTTTGAACAAGAAATAAAGAAATATGGAGTTAAGGATAAGAAGAAGTTATTTAAAGCA-TTAGAGTAGTTGCTTCtttttaaaattatggtt--aaaa-atataaaat-aaaatttaccattttgcc---atttttgagtgtacagttctgtgacattaagtatattcatgctatgt--ccattaccaccctccatctccagaactttttcatcttcccaaact-aaatgctatgtctattaagcaacaactcctcattctctcctcctccc-agcccctggtaacctccattctacattctgtctatgaatcttactaaactaattgaatcatataagtggattcatacaatatttttccttttcggtctgatttatttaatctagcttcatgtcttcaaggttcatacatattataggaaaataatttccttccttcttctgaaaaatattccattgtatggatctaccacattttgttca----tccctcgatgcatatatactctgttgc--ttctaccttttggcagttgcgaataattttgttataaacatgatgtagaaatatctgcttggtctctgctttaacttcttttgggtatgtacccagaagaggaactgctggatcatatgtcaattcaatgtttaattttttgaagaaTAAAAAGTGGCCGCTTCTACAAAACAGAAATTTTCCAATTAGGAGATGTGGGAC-AGGGAAAAATTCCTGTCTCTGAAAACTTAGAGAAAGTGTAGAGTTTTCACTATAAGCTTTGTAGAACCATTTTTAAATAA---------------AAATGAAGTATGCAATAACACTCATTTTGTGCTAGGTACTGGAGATACATGGAGGGAACCCTCAGTCCTCTGGGGGAAGAAGCTGGTTATAGAACAGTGTGATCACAGGTGCCACACAGAGAAGACTCCAGGGGCAAGCACAGAAAATAGCCATCGAGGGAGATGCTTTGCACGCGATGCAGAAGTGCCCTACAGGAGGTGACGTGGGAGTGAAGGAGGAAAAGATGACATTCTAAGTTGGAGAATTGGAAGATTAAACTTGGAATGACGTCAGCACTGAGATTCTGGGATCATATTGTACAATTGGCCCCATCTCAGCACTAACACTGTGAAATCTTACCTTTCTTGTGTCTTCAAATGATGGCCCTGTATTTAGCTTCTATATCTTTCTTTGACTGAATCTCAATACTAAAATTGGTTCTAATTCCAGGGGAGGTGTTTCTCTGAGTCCTCTCTTTTGAATCTCATAGCCTAACATTTTCTCTTCATCTTGAAGACCACATTCAGAAGAGACCCTAGTAACCCCGTATCTCAGCATATGAGGCTTCAGGCCAAGGGGAGCTAATTTGATTCTGAAAGATCT--TATCTGCCTCCAGCGCCCTAAGGTCCTGATGAAATGTCCAGCACCCTTGTGGAAATTCAAGTGTCTCCATACAGGATTATATGTCTTGGAGATTATGTGTAA
i chlSab2.chr17            C 0 I 300
s manLeu1.NW_012107142v1     182852 2188 -    735854 agtaacatctaggtctccaaaaacaagaaaaaatctgaggaattgtcacagccaagaggagcctaaggaggcatgacaactccatgtaatagggtatcttgaatgggaccttggaggagaaaaatattattcggtaaaacccaaggacacctgagtaatgtatggtttttggttaaaaataatgcatcaatattggttcaataattgtaagaaatgaaccatactaatgctagatgttaataacaggaga----------------------------aacAACTTCTCAATTTTCCTGTAATTAAAACTCTTCTGAAACTGAAGTCTA--TTTTTTAAAATTCTCCTGGAAAAA-AGTGGAAACATATGAAACATGATGGACAAATGTTAATAATTATTGAATGTGATGATGGATAATGAGAAGTCATTACATAATTCTGTTTTTGTGTATTTGAAGTTTTCTAAAATGGAAAGTTTGAggctgggcacagtggctcaaacctataatcccagcactttgggaggccaagagttcaagaccagcctgggcaacgtagcgagaccctgtctct---------actaaa-aacagaaaaattagccaggtgtagtgggcttgcacctgtagtcctagctactcaggagactgaggtgagaggatcacttgagcccaggaggccaaggctgcagtgagccatgatcatgtcattgtactcctgtctaggtgacagagtgaaaccttgtctcc---------aaaaaaaaaaaaGTTTGAACAAGAAATAAAGAAATATGGAGTTAAGGATAAGAAGAAACTATGTAAAGCA-TTAGAGTAGCTGCTTCtttttaaaattatggtta-aaaa-atatataat-aaaatttaccattttgccattatttttaagtgtaccattctgtgacattaagtatattcatgctgtgtaaccatcaccaccctccatctccagaacttttccatcttcccaaac--aaatgctatgtctattaagcaacaactcctcattctctcctcctccc-agcccctggtaacctccattctacattctgtctatgaatcttactaaactagttgaatcatgtaagtggattcatacaatacttttccttttcggtctgatttatttaatctagcttcatgtcttcaaggttcacacatattatcggaaaataatttccttccttattctgaaaaatattccattgtatggatctaccacattttgttca----tccctcgatgcatatatactcttttgc--ttctaccttttggcagttgcaactaatgttgttataaacatgatgtacaaatatctgcttggtctctgctttaacttcttttgggtatgtaccccgaagaggaactgctggatcatatgtcaattcagtgtttaattttttgaagaaTAAAAAGTGGCCACTTCTACAAAACAGAAATTTTCAGATTAGGAGATGTGGGAT-AGGGAAAAATTCC--TCTCTGAAAACTTAGAGAAAATGTAGAGTTTTCGCTATAAGCTTTGTAGAACCATTTTTAAATAA---------------AAATGAAGTATGCAATAACACTCATTTTGTGCTAGGTACTGGAGATACATGGAGGGAGCCCTCAGTCCTCTGGGGGAAGAAGCTGGTTATAGAACAGTGTGATCACAGGTGCAACACAGAGAAGACTCCAGGGGCAAGCACAGAAAATAGCCATCGAGGGAGATGCTTTGCACGCGATGCAGAAGTGCCCTGCAGGAGGTGACGTGGGAGTGAAGGAGGAAAAGATGTCATTCTAAGTTGGAGAATTGGAAGATTAAACTTGGAATGATGTCGGCACTGAGATTCTGGGATCATATTGTACAATTGGCCCCATCTCAGCACTCACACTGTGAAATCTTACCTTTCTTGTGTCTTCAAATGGTGGCCCTATATTTAGCTTCTATATCTTTCTTTGACTGAATCTCAATACTAAAATTGGTTCTAATTCCAGGGGAGGTGTTTCTCTGAGTCCTCTCTTTTGAATCTCATAGTCTAACATTTTCTCTTCATCTTGAAGACCACATTCAGGAGGGACCCTAGGAACCCCGTATCTCAGCATGTGAGGCTTCAGGCCAAGGGGAGCTAATTTGATTCTGAAAGATCT--TATCTGCCTCCAGCGCCCTAAGGTCTTGAGGAAATGTCCAGCACCCTTGTGGAAATTCAAGTGTCTCCATACAGGATTATATGTCTTGGAGATTATGTGTAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     139665 2189 -   1829203 aataacgtctaggtcttcaaaaacaaggaaaaatctgaggaactgtcacagccaagaggagcctaaggaggcatggcaactccatgtaatagggtatcttgaatgggaccttggaggagaaaaatattattcggtcaaacccaaggacacctgagcaatgtatggtttttggttaaaaataatgcatcaatattggttcaataattgtaaaaaatgaaccatactaatgctagatgttaataacaggaga----------------------------aacaacttctcaattttcctgtagttaaaactcttctggaactgaagtcta--ttttttaaaattctcctggaaaaa-agtggaaacatatgaaacaggatggacaaatgttaataattattgaatgtgatgatggataatgagaagtcattatgtaattctgttttcgtgtatttgaagttttc--aaatggaaagttTGAggctgggcacagtggctcaaacctataatcccagcactttgggaggccaagagttcaagaccagcctgggcaacgtagcgagactctgtctct---------actaaa-agcggaaaaattagccaggtatagcaggcttgcacctgtagtcctagctactcaggagactgaggtgagaggatcacttgagcccaggaggccaaggctgcagtgagccatgatcatgccattgtactccagtctaggtgacagagtgaaagcttgtctcc------aaaaaaaaaaaaaaaGTTTGAACAAGAAATAAAGAAACATGGAGTTAAGGATAAGAAGAAGTTATTTAAAGCA-TTAGAGTAGCTGCTTCTTCTTAAaattatggtta-aaaa-atatataat-aaaatttaccattttgcc---atttttaagtgtacagttctgtgacattaagtatattcatgttgtgtaaccatcaccaccctccatctccagaactttttcatcttcccaaact-aaatgctatgtctattaagcaacaactcctcattctctcctcctccc-agcccctggtaacctccattctacattctgtctatgaatcttactaaactagttggatcatataagtggattcatacaatatttttcctttttgatctgatttatttaatctagcttcatgtcttcaaggttaatacatattataggaaaataatttccttccttcttctgaaaaatattccattgtatggatctaccacattttgttca----tccctcgatgcatatatattctgttgc--ttctaccttttggcagttgcaaataatgttattataaacatggtgtacaaatatctgcttggtctctgctttaacttcttttgggtatgtacccagaagaggaactgctggatcatatgtcaattctatgtttaattttttgaagaaTAAAAAGTGGCCGCTTCTACCAAACCGAAATTTTCAGATTAGGAGATGTGGGAC-AGGGAAAAATTCCTGTCTCTGAAAACTTAGAGAAAACATAGAGTTTTCACTATAAGCTTTGTAGAACCATTTTTAAATAA---------------AAATGAAGTATGCAATaacactcattttgtgctaggtactggagatacaTGGAGGGAGCCCTCAGTCCTCTGGGGGAAGAAGCTGGTTATAGAACAGTGTGATCACAGGTGCAACACAGAGAAGACTCCAGGAGCAAGCACAGAAAATAGCCATCGAGGGAGGTGCTTTGCACGCGATGTGGAAGTGCCCTATAGGAGGTGACGTGAGAGTGAAAGAGGAAAAGATGACATTCTAAGTTGGAGAATTGGAAGATTAAACTTGGAATGATGTTAGCACTGAGATTCTGGGATCATATTGTACAACTGGCCCCATCTCAGCACTAACACTGTGAAATCTTACCTTTCTTGTGTCTTCAAATGGTGGCCCTATATTTAGCTTCTATATCTTTCTTTGGCTGAATCTCAGTACTAAAATTGGTTCTGATTCCAGGGGAGGTGTTTCTCTGAGTCCTCTCTTTTGAATCTCATAGCCTAACATTTTCTCTTCATCTTGAAGACCACATTCAGGAGGGACCCTAGGAACCCCGTATCTCAGCATGTGAGGCTTCAGGCCAAGGGGTGCTAATATGATTCTGAAAGATCT--TATCTGCCTCCAGCGCCGTAAGGTCCTGAAGAAATGTCCAGCACCCTTGTGGAAATTCAAGTGTCTCCATACAGGATTATATGTCTTGGAGATTATGTGTAA
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30319531 2143 + 171630274 aataatgtctgggttatcagaaacaagg-aaaatctgaggacttgtcacagccaagaggagcctaaggagacatgacaactccatgtaatagggtatcttgaatgggaccttggagttgaaaagtaatattaggtaaaaccgaaaga-acctgagtaatgtatggcttttggtt-aagataatgcatcaatattcattcactaattgtaagaaatgaaccatacaaatgttagatgttaataacaggagaaactgagtttgagatagatgaacactctaacagcttctcaattttcctgtagttaaaactattctagaactaaagtcta--ttttTT-TAATTCTCCTGGAAAAAAAGTGGAAATATATGAAACATGATGGAAAAATCTTAAAAATTATTTAATGTGATGATGGATAATGATAATTAATTATATAATTCTGTTTTTGTGTATTTGAAGTTTTCTGTGATGGAAAGTTTGAggctgggcacagtggctcacacttataatcctagcactttaagagcccaagagttcaagaccagcctgggtaacatagtgagaccccatctctacgaaaaaaaaaaaaaaacagaaaaattagccaggtatggtgggcttgcacctgtagtcctagctacttgggaggctgaggtgagaggaccacttgagcccaggtgaccaaggctgcagtgagccaagattatatcagtgcactccagtctagatgacagagtaaaaccttgtcttc---------aaaaagaaaaaaGTTTGAACAATAAAT--------ATAGAGATAAGAATAAGAAAAAGCTTTTTAAAGCATTTAGAGTAGCTGCtt-tttttaaaattgtggtttaaaaa-atttataacaaaaattgaccattttgcc---atttttatgtgtatagctctatgacattaagtgtatgcatgctgtataaccatcaccatcctccatctccagaactttttcatcttcccaaactgaaatgctatgtctgtt----aatatctcctcactctctcctcctccc-agcccctggtaacctccattatacattctgtctatgaatctgactagtccaggtgaatcatgtaaatggattcatacaatatttttccttttaagtctgatttatttaatctagcttcatgtcttcaaggttcatacatattatagaaaaataatttcctttcttcttctgaaaaatattccattgtatgtatctaccacattttgttcatcagtcaatccatggatgtatactctgttgcttttctaccttttggcagttatgaataatgttgttccaagcatgatgtacaaatatctgcttggtctctgctttaacttcttttgggtctatacccaggagaggagttgctggatcatatgctaatgctatgttaaattttttgaagaaTAAAAAGTGACTGCTTCTACAAAACAGAAATTTTCAGATTAGAAGATGTGGGAC-AGGGAAAAATTCCTGTCTCTGAAAACTT-----------TGAGTTTTCACTGTAAGCTTTGTAGAACCATTTGTAAATGATATATGATAAAAAT---GTAAAGTATGCAATAAAACTCATTTTGTGCTAGGTACTGAACATACATGGAGGGAACCCTCAGTCCTTTGGGG-AAGAAGCTGGTTATAGAACAGTATGATCACAGGCACAACACAGAGAAGACTCCAGGGACAAGCATAGAAAATAGCCATTGAAGGAGATTCTTTG----------------------------------------------------------CAGTTTAATT-------CTGGAAGATTAAACTCAGAATGATGTCAGCACTGAGATTCTAGGATCATATTGTACAATTGGCCCCATCTCAGCACTAACACTCTAAAATCTTACCTTTCTTATGTCTTCAAATTGTGGCCCTGTATTTAGCTTCTATATCTTTCTTGCTCTACATC-TAATACTAAAACTGGTCCTGATTTCAGGGGAGGTATT-----------TCTCTTTTGAATCCCATAGCCTGAAATTTTCTATTCATCTTGAAGGCCACATTCAGGAAGAACCTTAGGAACTCTGTATCTCAGCGTGTGAGGCTTCAGGCCAAGGAGTGCTAATTTGATTGTGAAAGATCT--TATCTGCCTCCAATACCATAAGGTCCTAATGAAATGTCCAGCATCGTTGTGGAAATTCAAGTGTCTTAATACAGGATTATATGTCTTGGAGACTGCGTATAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           145071 2179 +    515838 agtaatgtctaggttatcagaaacaagg-aaaatccgaggaattgtcacagccaagaagagcctaaggagacacggcaactccatgtaatagggtatcttgaatgggaccttggagtagaaaaataatattaggtaaaacccaaagacacttcagtaatgtatggcttttggttaaagataattcatcaatattcattcactaattgtaagaaatgaatgatacaaatgttagatgttaataacaggagaaactgagtctgaggtagatgaacactcaaacaacttctcaattttcctgtagctagaactgttctagaaccaaagtctattttTTTT-TAATTCTCCTGGAAAAATATtggagatatatgaaacatgatggacaaatgttagtaattattgaatgtgatgatggataatgagaattcattatataattctttttttgtgtatttgaagttttctatgagggaaagttTGAggctgagcacagtggctcatgtctataatcctagcacttt-ggagcccaagagttcaagaccagcc----taacatagtgagaccccgtctct---------agcaaaaaacagaaaaattagccaggtgtggcagg---------------ctagctacttgggaggctgaggtgagaggaccacttgagcccaggaggccaaggctgcagtgagccaagatcatgtcaacacactacagtctaggtgacacagtgaaaccctgtctcc---------aaaaagaaaaaaGTTTGAACAAGAAAT--------ATGGAGATAAGGATAAGAAGAAGCTATTTAAAGCATTTAGAGTAGCTGCTTAtttttaaaattgtgattt-aaaa-atatataac-aaaattgaccattttgcc---atttttatgtgtacagttctatgacattaagtgtatgcatgctgtgtaaccatcaccatcctccatctccagaactttttcatcttcccaaactgaaatgctctgtctgttaaacaacatctcctcattctctcctcctccc-agcccctggtaacctccattctacattctgtctatgaatctgactagtccaggtgaatcatgtaagtgaattcatgcaatatttttccttttcagtctgatttattcaatctagcttcatgtcttcaaggttcatacatattataggaaaataatttccttccttcttctgaaaaatattccattgtatgaatctacaacattttgttcatcaatccatccatggatgtatactctgttgcttttctaccttttggtagttatgaataatgttgttacaaacatgggatacaaa--------tggtctctgctttaacttcttttgggtctatacccaggagaggagttgctggatcatatgttaatgctatgttaaattttttgaagaaTAAAATGTGACTGCTTCTACAAAACAGAAATTTTCAGATTAGAAGATGTGGGAC-AGGGATAAATTCTCATCTCTGAAAACTT-----------AGAGTTTTCACTATAGGC-TTGTAGAACCATTTGTAAATGATATATGATAAAAATGAAGTAAAGTATGCAGTAAAACTCATTTTGTGCTAGGTATTGAACATACATGAAGGGAGCCCTCAGTCCTTTGGGG-AAGAAGCTGGTTATAGAACAGTGTGATCACAGACACAACAGAGAGAAGACTCCAGGGACAAGCACAGAAAATAGCCATTGAAGGAGATTTTTTGCATGCCATGCAGAGATGCACTACAGGAAGTGACGTGGGAATGAAGGAGGAAAAGATGACATTCCAAGTTGGAGAACTGGAAGATTAAACTCGGAAAGATGTCAGCACTGAAATTCTAGGATCATATTGTACAATTGGCCCCATCTCAGCACTAACACTCTAAAATCTTACCTTTCTTATATCTTCAAATTGTGGTCCTATATTTAGCTTCTGTGTCTTTCTTGGTCTGAATC-CAATACTAAAATTGGTCCTGATTTCAGGGGAGGTA-T-----------TCTCTTTTGAATCCCATAGCCTGAAATTTTCTATTCATCTTGAAGGCTACATTCAGGAAGAACCCTAGGAACTCCGTATCTCAGCGTGTGAAGTTTCAGGCCAAGGAGTGCTAGTTTGATTGTGAAAGATCT--TATCTGCCTCCAATGCCGTAAGGTCCTGATGAAATGTCCAGCATCACTGTATAAATTCAAGTGTCTTAATACAGGATTATATGTCTTGAAGAGTGCGTATAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     686024 2199 -   1771730 aataatgtctaggttatcagaaacaagg-aaaatctgaggaattgtcacagccaagaggagcctaaggagagatgacaactccatgtaatagggtatcttgaatgggaccttggaatagaaaaataa---taggtaaaacccaaagacacctgagtaatgtatggcttttggttaaagataatgcatcaatattcattcactaattgtaagaaatgaaccatacaaatattagatgttaataacaggagaaactgagtttgaggtagatggacactttaacagcttctcaattttcctgtagttaaaactgttctagaaccaaagtcta--ttttTT-TAATTCTCCTggaaaaa-agtggaaatatatgaaacacgatggaaaaatgttaataattattgaatgagatgatggataatgagaattcattatataattctgtttttgtgtatttgaagttttctgtgatggaaagctTGAggctgggcacggtggctcacacttataatcctagcacttcaagagcccaagagttcagggccagcctgcgcaacatagtgagaccccatctctac-------caaaaaaagcagaaaagttagccagatatggtgggcttgcacctgtagtcctagctacttgggagactgaggtgagaggaccacttgagcccaggaggccaaggctgcggtgagccaagatcatgtcactacactccagtctaggtgacagagtgaaaccttgtctcc---------aaaaagaaaaaaGTTTGAACTAGAAAT--------ATAGAGATAAGGATAAGAAGAAGCTATTTAAAGTATTTAGAGTAGCTGCTTCTTCTTAAaattgtggttt-aaaa-atatataac-aaaattgactattttatc---atttttctgtgtacagttctatgatatt--gtgtatgcatactgtgtaaccgtcaccatcctccacctccagaactttttcatcttcccaaactgaaatgctatgtctgttaaacaacatctcctcattctctcctcctccc-agtccctggtaaccaccattctacat----tttatgaatctgattagtctaggtgaatcatgtaagtggattcatacaatatttttccttttcagtctgatttatttaatctagtttcatgtcttcaaggttcatacatattataggaaaataatttccttcctttttctgaaaaatattccattgtatggatctaccacattttgttcatcaatccatccacggatgtatactctgctgcttttccaccttttggcagttatgaataatgttgttacaaacatgatgtacaaatatctgcttgatctctgctttaacttcttttggctccatacccaggagaggagttgctggatcatatgttaatgctatgttaaattttttgaagaaGAAAAAGTGACTGTTTCTACAAAACAGAAATTTTCAGATTAGAAGACGTTGGAC-AGGGAAAAATTCCAGTCTCTGAAAACTT-----------AGAGTTTTCACTATAAGCTTTGTAGAAACATTTGTAAATGATATATGATAAAAATGAAGTAAAGTATGCACTAAAACTCATTTTGTGCCAGGTACTGAACATACATGGAGGGAGCCCTCAGTCCTTTGGGG-AAGAAGCTGGTTATAGAACGGTGTGATCACAGGCACAACACAGAGAAGACTCCAGGGGCAAGCACAGAAAATAGCCATCGAAGGAGATTCTTTGCACGCCATGCAAAGGTGCACTACAGGAGGTGACGTGGGAGTGAAGGAGGAAAAGATGACATTCCAAGTTGGAGAACTGGAAGATTCAACTCGGAATGATGTCAGCACTGAGACTCTAGGATCGTATTGTACAATTGGCCCCATCTCAGCACTAACACTCTAAAATCTTACCTTTCTTATGTCTTCAAACTGTGGCCCTATATTTAGCTTCTATATCTTTCTTGGCCTGAATC-CAATACTAAAATTGGTCCTGATTCCAGGGGAGGTGTT-----------TCTCTTTTGAATCCCATAGCCTGAAATTTTCTATTCATCTTGAAGGCCACATTCAGGAAGAACCCTAGGAACTCTGTATCTCAGCATGTGAGGCTTCAGGCCAAGGAGTGCTAAATTGATTGTGAAAGATCT--TATCTGCCTCCAATGCCATAAGGTCCTGATGAAATGTCCAGCATTGTTGTAGAAATTCAAGTGTCTTAATACAGGATTATATGTCTTGGAGAGTGCATATAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     251748 2192 -    383796 aataatgtctaggttatcagaagcaagg-aaaatctgacgaattgtcacagccaagagtagcctaaggagagatgacaactccatgtaataggttatcttgaacaggacattggagtagaaaaataatagtagataaaacccaaagacacctgagtaatgtatggcttttctttaaagataatgcatcaatattcattcactaattataagaaatgaaccatataaatgttagatgttaataacaggagaaaccgagtttgatgtagatggacaatctaacagcttctcaattttcctgtagttaaaactgttctagaactaaagtcta--ttttTT-TAATTCTCCTggaaaaa-agtggaaatatatgaaacatgatggaaaaatgttaataattattgaatgtgatgatgggtaatgagaattaattatataattctgtttttgtgtatttgaagttttctatgatggaaagttTGAggctgggcatggtggctcacacctataatcctagcactttgggagcccaagagttcaagaccagcctgggcaacatagtgagaccctatctct---------accaaaaaacagaaaaattagccaggtgtggtgggcttgcacctgtagtcctagctctttgggaggctgaggtgagaggaccacttgaacccaggaggccaaggctgcagtgagccaagatcgtgtcaatgcactccagtctaggtgacagagtgaaaccttgtctcc---------aaaaaggaaaaaaTTT-AACAAGAAGT--------ATGGAGATAAGGATAAGAAGAAGCTATTTAAAGCATTTAGAGTAGCTGCTTCtttttaaaattgtggttt-aaaa-acatataac-aaaatttaccattttgcc---atttttatgtgtacagttctatgacattaagtatatgcatgctgtgtaaccatcaccatcctccatctccagaactttttcatcttcccaaactgaaatgc--tgtctattaaacagcatctcctctttctctcctcctccc-agcccc-ggtaacctccattctacattctgtctatgaatctgactaatctaggtgaatcctataagtggattcatacaatatttttccttttcagtctgatttatttaatctagcttcatgtcttcaaggttcatacatattataggaaaataatttccttccttcttctgaaaaatattccattgtatg-atctaccacattttgttcatcaatccatccatggatat---------tgcttttctaccttttggcagttatgaataatgttgttacaactatgatgtacaaatatctgcttggtctctgctttaacttcttttgggtctacacccaggagaggagttgctggatcatatgttaatgccatgttaaattttttgaagaaTAAAAAGTGACTGCTTCTACAAAACAGAAATTTTCAGATTAGAAGACGTGGGTC-AGGGAAAAATTCCTGTCTCTGAAAACTT-----------AGAGTTTTCACTATAAGCTTTGTAGAACCATTTGTAAATGATCTATGGTAAAAATGAAGTAAAGTATGCAATAAAACTCATTTTGTGCTAGGTTCTGAACATACATGGAGGGAGCCCTCAGTCCTTTGGGG-AAGAAGCTGGTTATAGAATGGTGTGATCACAGGCACAACACAGAGAAGACTCCAGGGGCAAGCACAGAAAAGAGCCATCAAAGGAGATTCTTTGCACGCCATGCAGAGGTGCACTACAGGAGGTGATGTGGGAGTGAAGGAGGAAAAGATGACATTCCAAGTTGGAGAACTGGAAGATTAAACTCGGAATTATGTCAGCACTGAGATTCTAGGATCATATTGTACAACTGGCCCCATCTCAGCAATAACACTCTAAAATTATACTTTTCTTATATCTTCAAATTGTGGCCCTATATTTAGCCTCTATATCTTTCTTGGTCTGAATC-CAATACTAAAATTGGTCCTGATTACAGGGGAGGTGTT-----------TCTCTTTTGAATCCCACATCCTGAAATTTTCTATTCATCTTGAAGGCCACATTCAGGAAGAACCCTAGGAACTCTGCATCTCAGCATGTGAGGCTTCAGGCCAAGGAGTGCTAATTTGATTGTGAAAGATCT--TATCTGCCTCCAATGCCATAAGGTCCTGATGAAATGTCCAGCATTGTTGTGGAAATTCAAGTGTCTTAATACAGGATTATATGTCTTGGAGATTGTGTGTAA
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464    5 +  18854210 I

a score=5011320.000000
s hg38.chr6_GL000254v2_alt  1368645 544 +   4827813 ---gaaaagctttacagataggtgtgtctcagtgatgctgtgcagagtaacctgtggcctaagtc-aagtcagaaaatgcttttgactctatatttctc-aaaaatgtaagtcttaaaatttggctatggatggg-aaaatattacataattgaaaggataaatataagtatgccaatcagccaaaaacactgcaaa--tgtttaatgcagatttaagttttccctcaaaaactgttaataaattaatagtgcagcttacaaatgatgAAAAGAGCTGAGACGTTTA-AAAAAACTTTCCAAGTGTCAGGTCCTGGTACTTTACATTTATTCTACCTCCTAATCCTTATACTAGGTCAAAGCTCATTTTAT-----------GTCTTCAAGATTCAGATGTAACACTGGGAATGAGAAAGGTTAATATAAGTGATATGTCCAGGA-CTATACTTCTAGTAATTATAGCTCACTGAT--GG-AGAGAACATTAAAATCTGTTTGGCCTTCACTTAAAAACAAATAATATTTGTGTTATAGAAGCAAGACCTTTTTAGTCACAAGTTAAT
s panTro5.chr6             30242022 544 + 175400573 ---gaaaagctttacagataggtgtctctcagtgatgctgtgcagagtaacctgtggcctaagtc-aagtcagaaactgcttttgactctatatttctc-aaaaatataagtcttaaaatttggctatggatggg-aaaatattacataattgaaaggataaatataagtatgccaatcagccaaaaacactgcaaa--cgtttaatgcagatttaagttttccctcaaaaactgttaataaattaatagtgcagcttacaaatgatgAAAAGAGCTGAGACGTTTA-AAAAAACTTTCCAAGTGTCAGGTCCTGGTACTTTACATTTATTCTACCTCCTAATCCTTATACTAGGTCAAAGCTCATTTTAT-----------GTCTTCAAGATTCAGATGTAACACTGGGAATGAGAAAGGTTAATATAAGTGATATGTCCAAGA-CTATACTTCTAGTAATTATAGCTCACTGAT--GG-AGAGAACATTAAAATCTGTTGGGCCTTCATTTAAAAACAAATAATATTTGTGTTATAGAAGCAAGACCTTTTTAGTCACAAGTTAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30472555 544 + 173848474 ---gaaaagctttacagataggtgtgtctcagtgatgctgtgcagagtaacctgtggcctaagtc-aagtcagaaactgcttttgactctatatttctc-aaacatataagtcttaaaatttggctatggatggg-aaaatattacataattgaaaggataaatataagtatgccaatcagccaaaaacactgcaaa--cgtttaatgcagatttaagttttccctcaaaaactgttaataaattaatagtgcagcttacaaatgatgAAAAGAGCTGAGACGTTTA-AAAAAACTTTCCAAGTGTCAGGTCCTGGTACTTTACATTTATTCTACCTCCTAATCCTTATACTAGGTCAAAGCTCATTTTAT-----------GTCTTCAAGATTCAGATGTAACACTGGGAATGAGAAAGGTTAATATAAGTGATATGTCCAAGA-CTATACTTCTAGTAATTATAGCTCACTGAT--GG-AGAGAACATTAAAATCTGTTGGGCCTTCACTTAAAAACAAATAATATTTGTGTTATAGAAGCAAGACCTTTTTAGTCACAAGTTAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     179157 548 +   2037526 ---GAAAAGCTTTACAGATAGgtgtgtctcagtgatgctgtgcagagtaacctgtggcctaagtcaaagtcagaaaatgcttttgactctatatttctcaaaaaatataagtcttaaaatgtggatatggatggg-aaaatattacataactgaaaggataaatataagtatgccaatcagccaaaaacactgcaaa--tgtttaatacagatttaagttttccctcaaaaacttttaataaattaatagtgcagcttacaaatgatgAAAAGAGCTGAGACATTTA-AAAAAACTTTCCAAgtgtcaggtcctggtactttacatttattctacctcctaatccttatactaggtcaaagctcattttat-----------gtcttcaagattcagatgtaacactgggaatgagaaaggttaatataagtgatatgtccaagacctatacttatagtaaTTATAGCTCACTGAT--GGAAGAGAACATTAAAATCTGTTGGGCCTTCACTTAAAAACAAATAATATTTGTGTTATAGAAGCAAGACCTTTTTAGTCACAAGTTAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74848682 543 + 122973662 ---GAAAAGCTTTACAGACAGgtgtgtctcagtgatgcagtgcagagtaacctgtgaccaaagtc-aattcagaaaatgcttttgactctatatttctc-aaaaatataagtcttaaaatttggatattgatggg-aaaatattacataactgaagggataaatataagtatgcccatcacccaaaaacactgcata--tgcttaatgcagatttaagttttccctcaaaaactgttaataaattaatagtgcagcttacaaatgatgAAAAGAGCTGGGATGTTTA-AAAAAACTTTCCAAgtgtcaggtcctggtactttacatttattctacctcctaatccttataataggtcaaagctcattttat-----------gtcttcaaggttcagatgtaacactgggaattagaaaggttaatataagtgacatgtccaagg-ctacacttctagtaaTTATAGTTCACTGAT--GG-AGAG-ACATTAAAATCTGTTGGGCCTTCACTTAAAAACAAATAATATTTGTGTTATAGAAGCAAGACCTTTTTAGTCACAAGTTAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30705107 532 + 172585720 ---GAAAAGCTTTAGAGATAagtgtgtctcagtgatgctgtgcagagtaacctgtggccaaagtc-aattcagaaaatgcttttgactctatatttctc-aaaaatataagtcttaaaatttggatatttatggg-aaaacattacataattgaagggataaatataagtatgccaatcagccaaaaacactgcata--tgtttaatgcagattcaagttttccctcaaaaactgttaataaactaacagtgcaacttacaaatgacgAAAAGAGCTCGGATGTTTT-AAAAAACTTTCCAAGTGTCTGGTCCTGGTACTTTACATTTATTCTACCTCCTAATCCTTATAATAAGTCAAAGCTCA-----------------------AGGGTTCAGATGTAACACTAGGAATTAGAAAGGTTAATATAAGTGACATGTCCAAGA-CTACGCTTCTAGTACTTACAGTTCACTGAT--GG-AGAAAACATTAAAATCTGTTGGGCCTTCACTTAAAAACAAATAATATTTGTGTTATAGAAGCAAGACCTTTTTACTCACAAGTTAAT
i rheMac8.chr4             C 0 I 1747
s macFas5.chr4             30004701 532 - 170955103 ---GAAAAGCTTTAGAGATAGgtgtgtctcagtgatgctgtgcagagtaacctgtggccaaagtc-aattcagaaaatgcttttgactctatatttctc-aaaaatataagtcttaaaatttggatatttatggg-aaaatattacataattgaagggataaatataagtatgccaatcagccaaaaacattgcata--tgtttaatgcagattcaagttttccctcaaaaactgttaataaactaacagtgcaacttacaaatgacgAAAAGAGCCGGGATGTTTT-AAAAAACTTTCCAAGTGTCAGGTCCTGGTACTTTACATTTATTCTACCTCCTAATCCTTATAATAAGTCAAAGCTCA-----------------------AGGGTTCAGATGTAACACTAGGAATTAGAAAGGTTAATAAAAGTGACATGTCCAAGA-CTACACTTCTAGTACTTACAGTTCACTGAT--GG-AGAAAACATTAAAATCTGTTGGGCCTTCACTTAAAAACAAATAATATTTGTGTTATAGAAGCAAGACCTTTTTACTCACAAGTTAAT
i macFas5.chr4             C 0 I 1747
s macNem1.NW_012012100v1     231353 527 +   1495729 ---GAAAAGCTTTAGAGATAGATgtgtctcagtgatgctgtgcagagtaacctgtggccaaagtc-aattcagaaaatgcttttgactctatatttctc-aaaaatataagtcttaaaatttggatatttatgggaaaaatattacataattgaagggataaatataagtatgccaatcagccaaaaacactacata--tgtctaatgcagattcaagttttccctcaaaaactgttaataaactaacagtacaacttacaaatgatgAAAAGAGCTCAGATGTTTTAAAAAAACTTTCCAAGTGTCTGGTCCTGGTACTTTACATTTATTCTACTTCCTAATCCTTATAATAGGTCAAAGCTCA-----------------------AGGGTTCAGATGTAACAC-------TAGAAAGGTTAATAAAAGTGACATGTCCAAGA-CTACGCTTCTAGTACTTATAGTTCACTGAT--GG-AGAGAACATTAAAATCTGTTGGGCCTTCACTTAAAAACAAATAATATTTGTGTTATAGAAGCAAGACCTTTTTACTCACAAGTTAAT
i macNem1.NW_012012100v1   C 0 I 1746
s cerAty1.NW_012002535v1     353354 533 -    863181 ---GAAAAGCTTTAGAGATAGgtgtgtctcagtgatgctgtgcagagtaacctgtggccaaagtc-aattcagaaaatgcttttgactctatatttctc-aaaaatataagtcttaaaatttggatatttatgga-aaaatattacataattgaagggataaatataagtatgccaatcagccaaaaacactgcata--tgtttaatgcagattcaagttttccctcaaaaactgttaataaactaacagtgcaacttacaaatgacgAAAAGAGCTCGGATGTTTTAAAAAAACTTTCCAAGTGTCTGGTCCTGGCACTTTACATTTATTCTACCTCCTAATCCTTATAATAGGTCAAAGCTCA-----------------------AGGGTTCAGATGTAACACTAGGAATTAGAAAGGTTAATAAAAGTGACATGTCCAAGA-CTACGCTTCTAGTACTTATAGTTCACTGAT--GG-AGAGAACATTAAAATCTGTTGGGCCTTCACTTAAAAACAAATAATATTTGTGTTATAGAAGCAAGACCTTTTTACTCACAAGTTAAT
i cerAty1.NW_012002535v1   C 0 I 1746
s chlSab2.chr17            29404466 532 -  71996105 ---gaaaaGCTTTAGAGATAGgtgtgtctcagtgacgctgtgcagagtaacctgtggccaaagtc-aattcagaaaatgcttttgactctatatttctc-aaaaatataagtcttaaaatttggatatttgtggg-aaaatattacataattgaagggataaatatgagtatgccaatcagccaaaaacactgcata--tgtttaatgcagattcaagtattccctcaaaaactgttaataaactaacagtgcaacttacaaatgatgAAAAGAGCTGGGATGTTTT-AAAAAGCTTTCCAAGTGTCAGGTCCTGGTACTTTACATTTATTCTACCTCCTAATCCTTATAATAGGTCAAAGCTCA-----------------------AGGGTTCAGATGTAACACTAGGAATTAGAAAGGTTAATACAAGTGACATGTCCAAGA-CTACGCTTCTAGTACTTATAGTTCACTGAT--GG-AGAGAACATTAAAATCTGTTGGGCCTTCACTTAAAAACAAATAATATTTGTGTTATAGAAGCAAGACCTTTTTACTCACAAGTTAAT
i chlSab2.chr17            I 300 I 1747
s manLeu1.NW_012107142v1     185040 533 -    735854 ---GAAAAGCTTTAGAGATAGgtgtgtctcagtgatgctgtgcagagtaacctgtggccaaagtc-aattcagaaaatgcttttgactctatatttctc-aaaaatataagtcttaaaatttggatatttatgggaaaaatattacataattgaagggataaatataagtatgccaatcagccaaaaacactgcata--tgtctaatgcagattcaagttttccctcaaaaactgttaataaactaacagtgcaacttacaaatgacgAAAAGAGCTCAGATGTTTT-AAAAAAATTTCCAAGTGTCTGGTCCTGGTACTTTACATTTATTCTACCTCCTAATCCTTATAATAGGTCAAAGCTCA-----------------------AGGGTTCAGATGTAACACTAGGAATTAGAAAGGTTAATAAAAGTGACATGTCCAAGA-CTACGCTTCTAGTACTTATAGTTCACTGAT--GG-AGAGAACATTAAAATCTGTTGGGCCTTCACTTAAAAACAAATAATATTTGTGTTATAGAAGCAAGACCTTTTTACTCACAAGTTAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     141855 532 -   1829203 ---AAAAAGCTTTAGAGATAGgtgtgtctcagtgatgctgtgcagagtaacctgtggccaaagtc-aatgcagaaaatgcttttgactctatatttctc-aaaaatataagtcttaaaatttggatattgatggg-aaaatattacataattgaagggataaatataagtatgccaatcagccaaaaacactgcata--tgtttaatccagattcaagttttccctcaaaaactgttaataaactaacagtgcaacttacaaatgacgAAAAGAGTTGGGATGTTTT-AAAAAActttccgagtgtcaggtcctggtactttacatttattctaccttctaatccttataataggtcaaagctca-----------------------agggttcagatgtaacactaggaattagaaaggttaatacaagtgacatgtccaaga-ctacgcttctcgtaCTTATAGTTCACTGAT--AG-AGAGAACATTAAAATCTGTTGGGCCTTCACTTAAAAACAAATAATATTTGTGTTACAGAAGCAAGACCTTTTTACTCACAAGTTAAT
i colAng1.NW_012115577v1   I 1 I 6984
s calJac3.chr4             30321674 540 + 171630274 GAAAAAAATTTTTAGAGATAagcgtgtcacagtgatgctgtgcagagtagcctgtggccaaaatc-aattcagaaaatgcttttgactctatatttctc-aaaaatatgagtcttaagattttgatattgatggg-gaaatgttacataattgaagggataaatacaagcatgccaatcagccaaaaacactgcatatgtgtttaatgcggatttaagttctgtctcaaaaactgttaataaatgaatagtgcagcttacaaAAGATTAAAAGA--------GTTC--AAAAAACTTTCCAAgtgtcgggtgctggtactttacatttattctacctcctaatccttataataggtcaaagctcattttat-----------gtcttcaaagttcagatgtgacactgggaattggaaagattaatataagagacatgcctaagg-ctacacttctagtaaTTATAGTTCATTGAT--AA-AGAAAACATTAAAATCTGTTGGGCCCTCACTTTAAAATAAATAATATTTGTGTTATAAAAGCAAGATCCCATCAGTCACAAGTTAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           147250 539 +    515838 GAAAAAAATTTTTAGAGATAGgtgtgtctcagtgatgctgtgcaga----cctgtggccaaaatt-cattcagaaaatgctttcaactcaatatttctc-aaaagtatgagtcttaaaattttgatattggtggg-aaaatgttacataattgaagggataaatacaagtatgccaatcagccaaaaacactgcatatatgtttaatgcagat-----ttttgtctcaaaaaccgttaataaattaatagtgcagcttacaaAAGATTAAAAGAGCTGGGATGTTT--AAAAAGCTTTCCAACTGTCAGTtgctggtactttacatttattctacctcctaatccttataataggtcaaagctcattttat-----------gtcttcaaagttcagatgtgacactgggaattagaaaggttagtat--gagacatgtacaagg-ctacacttctagtaaTTATAGTTCATTGattaaa-aaaaaaaattaaaatCTGTTGGGCCCTCACTTAAAAACAAATAATATTTGTGTTATAGAAGCAAGATCCCTTCAGTCACAAGTTAAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     688223 550 -   1771730 GAAAAAATCTTTTAGAGATAGgtgtgtctcagtgatgctgtgcaga----cctgtggccaaaatc-aattcagaaaatgcttttgactcaatatttctc-aaaaatatgagtcttaaaattttgatattgatggg-aaaatgttacataattgaagagataaatacaagtatgccaatcagccaaaaacactgcatatatgtttaatgcagat-----ttttgtctcaaaaactgttaataaattaatagtgcagcttacaaAAGATTAAAAGAGCTGGGATGTTT--AAAAAACTTTCCAAGTGTCAGGTGCTGGTACTTTACATTTATTCTACCTCCTAATCCTTATAATAGGTCAAAGCTCATTATGTCAAAGACATAAGTCTTCAAAGTTCAGATGTGACACTGGGAATTAGAAAGGTTAATATAAGAGAAATGTCTAAGG-CTACACTTCTAGTAATTATAGTTCATTGAT--AA-AGAAAACATTAAAATCTGTTGGGCCCTCACTTAAAAATAAATAATATTTGTGTTATAGGAGCAAGATTCCTTCAGTCACAAGTTAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     253940 543 -    383796 GAAAATTTTTTTTAGAGGTAagtgtgtctcagtgatgctatgcagagtaacctgtggccaaaatc-aattcagaaaatgcttttgactcaatatttctc-aaaaatatgagtcttaaaattttgatattggtggg-aaaatgttacataatttaagagctaaatacaagtatgccaatcagccaaaaacactgcatatgtgtttaatgcagat-----ttttgtctcaaaaactgttaataaattaataatgaagcttacaGAAGATtaaaagagctgggatgttt--aaaaaactttccaagtgtcaggtgctggtactttacatttattctacctcctaatccttataataggtcaaagttcattttat-----------gtcttcaaagttcagatgtgacactgggaattagaaagtttaatataagagacatgtccaagg-ctacatttctagtaaTTATAGTTCATTGAT--AA-AGAAAACATTAAAATCTGTTGGACCCTCACTTAAAAACAAATAATATTTGTGTTATAGAAGCAAGATCCCTTCAGTCACAAGTTAAC
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I

a score=49033.000000
s hg38.chr6_GL000254v2_alt  1369189 6 +   4827813 AATTTT
s panTro5.chr6             30242566 6 + 175400573 AATTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30473099 6 + 173848474 AATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     179705 6 +   2037526 AATTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74849225 6 + 122973662 AATTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30707386 6 + 172585720 AGTTTT
i rheMac8.chr4             I 1747 C 0
s macFas5.chr4             30006980 6 - 170955103 AGTTTT
i macFas5.chr4             I 1747 C 0
s macNem1.NW_012012100v1     233626 6 +   1495729 AGTTTT
i macNem1.NW_012012100v1   I 1746 C 0
s cerAty1.NW_012002535v1     355633 6 -    863181 AGTTTT
i cerAty1.NW_012002535v1   I 1746 C 0
s chlSab2.chr17            29406745 6 -  71996105 AGTTTT
i chlSab2.chr17            I 1747 C 0
s manLeu1.NW_012107142v1     185573 6 -    735854 AGTTTT
i manLeu1.NW_012107142v1   C 0 I 9872
s colAng1.NW_012115577v1     149371 6 -   1829203 AGTTTT
i colAng1.NW_012115577v1   I 6984 C 0
s calJac3.chr4             30322214 6 + 171630274 AGTATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           147789 6 +    515838 AGTATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     688773 6 -   1771730 AGTATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     254483 6 -    383796 AGTATT
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464 5 +  18854210 I

a score=8522670.000000
s hg38.chr6_GL000254v2_alt  1369195 1011 +   4827813 -AAAGAAAAGATTCAACATGTAAATTTATCTGGAAAGGCC-----AGGGGTGAGGCTGCCTAGAGACATGATTAGATTCGGAGA--TACATTTGTCATCAGATCTCTCTGTACTTCTAAAGAAGATAGCCAATATCAGCTTATCAGCTCCAACTCCTCTCATATTATTCTACCTTAACAGCTTCAGCAGAAAAATAGACATCTTTCTCACAATGTTCATAAATAAAGAACCAGAGAAGATGACCTTTGGACCAATACCTGTTGTTATGGAGATGTGGTACAGTGTGGGAAACTCTGATTGGTCAGGGCTGGGTCATGTTATTTCCTCATCCCCTGGTCCATTATATTATTTCTTAAGTTATTTAAAGTCATGGCTACTATttttatttattttaattgacataattatacatattgatatagtacagtgtgatattttgatacatgtatacaatgtgtaataagcaaataagg--------------------------gtatttagcctatgcatcacatcaaacgtttaccatttctttgtg-------------------------------atggaaacattcaaaatcatatcaaaaagataatccaccacaatcaagtgggtttcataccagggaagaagggatggttgaacacactcaagtcaataaatgtgacacaccacataaacagaattaaaaacaaaaatcacatgatcatctcaatagatgc---aaaaaaaacattcaacaaaatctggcatcc-tttatgattaaagctctcagcaaaatcggcatacaaggaacatacctcaatgtaatcaaagccatc--------------tatgagaaacccacagccaacataatactgagtggggaaaagctgaaagcattccctctgagaactggaacaagacaatgatgcccactctcaccacttctcttcaacacagtcctgaaagtcctagccagagcagtcagacaagg--gaaagaaataaaggtcatccaaatcggtaaagaggaagccaaactgtcactgtttgctgata---------------tgattgtatacctaggaaactctaaagactcctccaa
s panTro5.chr6             30242572 1026 + 175400573 -AAAGAAAAGATTCAAcatgtaaatttatctggaaaggcc-----aggggtgaggctggctagagacatgattagattcagaga--cacatttgtcatcagatctctctGTACTTCTAAAGAAGATAGCCAATATCAGCTTATCAGCTCCAACTCCTCTCATATTATTCTACCTTAACAGCTTCAGCAGAAAAATAGACATCTTTCTCACAATGTTCATAAATAAAGAACCAGAGAAGATGACCTTTGGACCAATACCTGTTGTTATGGAGATGTGGTACAGTGTGGGAAACTCTGATTGGTCAGGGCTGGGTCATGTTATTTCCTCATCCCCTGGTCCATTATATTATTTCTTAAGTTATTTAAAGTCATGGCTACTATttttatttattttaattgacataattatacatattgatatagtacagtgtgatattttgatgcatgtatacaatgtgtaataagcaaatcagg--------------------------gtatttagcctatgcatcacatcaaacgtttatcatttctttgtg-------------------------------atggaaacattcaaaatcatatcaaaaagataattcaccacaatcaagtgggtttcataccagggaagaagggatggttgaacacactcaagtcaataaatgtgacacaccacataaacagaattaaaaacaaaaatcatatgatcatctcaatagatgc---aaaaaaaacattcaacaaaatctggcatcc-tttatgattaaagctctcagcaaaatcggcatacaaggaacatacctcaatgtaatcaaagccatc--------------tatgagaaacccacagccaacataatactgagtggggaaaagttgaaagcattccctctgagaactggaacaagacaatgatgcccattctcaccacttctcttcaacacagtcctgaaagtcctagccagagcaatcagacaagg--gaaagaaataaaggtcatccaattcggtaaagaggaagccaaactgtcactgtttgctgatactgtcactgctgatatgattgtatacctaggaaactctaaagactcctccaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30473105 1026 + 173848474 -AAAGAAAAGATTCAAcatgtaaatttatctggaaaggcc-----aggggtgaggctggctagagacatgattagattcagaga--cacatttgtcatcagatctctctGTACTTCTAAAGAAGATAGCCAATATCAGCTTATcagctccaactcctctcatattattctaccttaacagcttcagcagaaaaatagacatctttctcacaatgttcataaataaagaaccagagaagatgacctttggaccaatacctgttgttatggagatgtggtacagtgtgggaaactctgattggtcagggctgggtcatgtTATTTCCTCATCCCCTGGTCCATTATATTATTTCTTAAGTTATTTAAAGTCATGGCTACTATttttatttattttaattgacataattatacatattgatatagtacagtgtgatattttgatgcatgtatacaatgtgtaataagcaaatcagg--------------------------gtatttagcctatgcatcacatcaaacatttatcatttctttgtg-------------------------------atggaaacattcaaaatcatatcaaaaagataattcaccacaatcaagtgggtttcataccagggaagaagggatggttgaacacactcaagtcaataaatgtgacacaccacataaacagaattaaaaacaaaaatcatatgatcatctcaatagatgc---aaaaaaaacattcaacaaaatctggcatcc-tttatgattaaagctctcagcaaaatcggcatacaaggaacatacctcaatgtaatcaaagccatc--------------tatgagaaacccacagccaacataatactgagtggggaaaagttgaaagcattccctctgagaactggaacaagacaatgatgcccactctcaccacttctcttcaacacagtcctgaaagtcctagccagagcaatcagacaagg--gaaagaaataaaggtcatccaaatcggtaaagaggaagccaaactgtcactgtttgctgatactgtcactgctgatatgattgtatacctaggaaactctaaagactcctccaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     179711 1011 +   2037526 -AAAGAAAAGATTCAACATGTAAATTTATCTGGAAAGGCC-----AGGGGTGAGGCTGGCTAGAGACATGATTAGATTCAGAGA--CACATTTGTCATCAGATCTCTCTGTACTTCTAAAGAAGATAGCCAATATCAGCTTATCAGCTCCAACTCCTCTCATATTATTCTACCTTAACAGCTTCGGCAGAAAAATAGACATCTTTCTCACAATGTTCATAAATAAAGAACCAGAGAAGATGACCTTTGGACCAATACCTGTTGTTATGGAGATGTGGTACAGTGTGGGAAACTCTGATTGGTCAGGGCTGGGTCATGTTATTTCCTCATCCCCTGGTCCATTATATTATTTCTTAAGTTATTTAAAGTCATGGCTACTATttttatttattttaattgacataattatacatattgatatagtacagtgtgatattttgatacatgtatacaatgtgtaataagcaaatcagg--------------------------gtatttagcctatgcatcacatcaaacgtttaccatttctttgtg-------------------------------atggaaacattcaaaatcatatcaaaaagataatccaccacaatcaagtgggtttcataccagggaagaagggatggttgaacacactcaagtcaataaatgtgacacaccacataaacagaattaaaaacaaaaatcacatgatcatctcaatagatgc---aaaaaaaaaattcaacaaaatctggcatcc-tttatgattaaagctctcagcaaaatcggcatacaaggaacatacctcaatgtaatcaaagccatc--------------tatgagaaacccacagccaacataatactgagtggggaaaagttgaaagcattccctctgaaaactggaacaagacaatgatgcccactctcaccacttctcttcaacacagtcctgaaagtcctagccagagcaatcagacaagg--gaaagaaataaaggtcatccaaatcagtaaagaggaagccaaactgtcgttgtttgctgata---------------tgattgtatacctaggaaactctaaagactcctccaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74849231 1024 + 122973662 -AAAGAAAAGATTCAAcatgtaaatttatctggaaaggcc-----aggggtgaggctggctagagacatgattagattcagagactcacatttgtcatcagatctctctttacttctAAAGAAGATAGCCAATATCAGCTTCTCAGCTCCAACTCCTCTCACGTTATCCTACCTTAACAGCTTCAGCAGACAAACAGACATCTTTCTGACAATGTTCATAAATAAAGAACCAGAGAAGATGACCTTTGGACCAATACCTGTTGTTACGGAGATGTGGTATAGTGTGGGGAACACTTACTGGTCAGGGCTGGGTCATGTTATTTCCTCATCCCCTGGTCCATTATATTATTTCTCAAGTTATTTAAAGCCATGGCTATTATttttatttattttaattgacataattatacatattgatatagtacagtgtgatattttgatacatgtatacaatgtgtaataagcaaatcagggtatttcacatatgcatcacatgagagtatttagcatatgcatcacatcaaacgtttaccatttctttgtg-------------------------------atggaaacattcaaaatcatatcaaaaagataatccaccacaatcaagtgggcttcataccagggaagaagggatggttgaacacactcaagtcaataaacgtgacacaccacataaacagaattaaaaacaaaaatcacatgatcatctcaatagatgc--aaaaaaaaacattcaacaaaatctggcatctgtttatgattaaaggtctcagcaaaatcggcatacaaggaacatacctcaatgtaataaaagccatc--------------tatgacaaacccacagccaacataatactgaatggggaaaagttgaaagcattccctctgaaaattggaacaagacaaggatgcccactctcacca-----cttcaacacagtactgga------------agcaatcagacaaga--gaaagaaataaagggcatccaaatcggtaaagaggaagccaaactgtcgctgtttgctgata---------------tgactgtatacctagaaaactctacagactcctccaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30707392 1010 + 172585720 -AAAGAAAAGATTCAACATGTAAATTTATCTGGAAAGGCCAGGGGAGGGGTGAGGTTGGCTAGAGACATGATTA-ATTCAGAGACGCAAATTTGTCATCAGA--GCTCTGTATTTCTAAAGAAGATAGTCAATATCAGCTTATcagctccagcttctct---attatcctaccttaacagcttcagcagaaaaatagacatctttctcacaatgttcataaataaagaaccagagaagatgacctttggactaatgcctgttgttagggagatatggtacagtgtgggaaatcctgattggtcagggctgggtcatgtTATTTCCTCATCCCCTGGTCCACCATATTATTTCTTAAGTTATTTAAAGTCATGGCTATTATt----tttattttagttgacataattgtacatattaatatagtacagtgtgatattttgatacatgaatacaatgtgtaataagcaaatcagg--------------------------gtatttagcacactcatcacatcaaacgtttaccatttctttatg-------------------------------atggaaacattcaaaatcAAatcaaagagataatccaccacaatcaaatgggtttcataccagggaagcagggatggttgaacacacacaagtcaataaatgtgacacaccacataaacataattgaaaacaaaaatcacatgatcatctcaatagatgc--aaaaaaaagcattcaacaaaatctggcatccctttatgattaaagctctcagcaaaatcggcatacaaggaacatacctcaatgtaataaaagctatt--------------tatgacacacccacagccaacataatactgaatgaggaaaagttgagggcattccctctgagaactggaaaaagacaaggatgcccactctcaccacttctcttcaacacagtcctggaagtcctagccagagcgatcagacaaga--gagacaaataaagggcatccaaatatgtaaagaagaagccaaactgtcactgtttgctgata---------------tgattgtatacctagaaaactctaaggactcctccaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30006986 1010 - 170955103 -AAAGAAAAGATTCAACATGTAAATTTATCTGGAAAGGCCAGGGGAGGGGTGACGTTGGCTAGAGACATGATTA-ATTCAGAGACTCAAATTTGTCATCAGA--GCTCTGTATTTCTAAAGAAGATAGTCAATATCAGCTTATCAGCTCCAGCTTCTCT---ATTATCCTATCTTAACAGCTTCAGCAGAAAAATAGACATCTTTCTCACAATGTTCATAAATAAAGAACCAGAGAAGATGACCTTTGGACTAGTACCTGTTGTTAGGGAGATATGGTACAGTGTGGGAAATCCTGACTGGTCAGGGCTGGGTCATGTTATTTCCTCATCCCCTGGTCCATCATATTATTTCTTAAGTTATTTAAAGTCATGGCTATTATt----tttattttagttgacataattgtacatattaatatagtacagtgtgatattttgatacatgaatacaatgtgtaataagcaaatcagg--------------------------gtatttagcacactcatcacatcaaacgtttaccatttctttatg-------------------------------atggaaacattcaaaatcAAatcaaagagataatccaccacaatcaaatgggtttcataccagggaagcagggatggttgaacacacacaagtcaataaatgtgacacaccacataaacataattgaaaacaaaaatcacatgatcatctcaatagatgc--aaaaaaaagcattcaacaaaatctggcatccctttatgattaaagctctcagcaaaatcagcatacaaggaacatacgtcaatgtaataaaagctatt--------------tatgacacacccacagccaacataatactgaatgaggaaaagttgagggcattccctctgagaactggaaaaagacaaggatgcccactctcaccacttctcttcaacacagtcctggaagtcccagccagagccatcagacaaga--gagagaaataaagggcatccaaatatgtaaagaagaagccaaactgtcactgtttgttgata---------------tgattgtatacctagaaaactctaaggactcctccaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     233632 1010 +   1495729 -AAAGAAAAGATTCAACATGTAAATTTATCTGGAAAGGCCAGGGGAGGGGTGAGGTTGGCTAGAGACATGATTA-ATTCAGAGACTCAAATTTGTCATCAGA--GCTCTGTATTTCTAAAGAAGATAGTCAATATCAGCTTATCAGCTCCAGCTTCTCT---ATTATCCTACCTTAACAGCTTCAGCAGAAAAATAGACATCTTTCTCACAATGTTCATAAATAAAGAACCAGAGAAGATGACCTTTGGACTAATACCTGTTGTTAGGGAGATATGGTACAGTGTGGGAAACCCTGATTGGTCAGGGCTGGGTCATGTTATTTCCTCATCCCCTGGCCCATCATATTATTTCTTAAGTTATTTAAAGTCACGGCTATTATt----tttattttagttgacataattgtacatattaatatagtacagtgtgatattttgatacatgaatacaatgtgtaataagcaaatcagg--------------------------gtatttagcacactcatcacatcaaacgtttaccatttctttatg-------------------------------atggaaacattcaaaatcAAatcaaaaagataatccactacaatcaaatgggtttcacgccagggaagcagggatggttgaacacacacaagtcaataaatctgacacaccacataaacataattgaaaacaaaaatcacatgatcatctcaatagatgc--aaaaaaaagcattcaacaaaatctggcatccctttatgattaaagctctcagcaaaatcggcatacaaggaacatacctcaatgtaataaaagctatt--------------tatgacacacccacagccaacataatactgaatgaggaaaagttgagggcattccctctgagaactggaaaaagacaaggatgcccactctcaccacttctgttcaacacagtcctggaagtcccagccagagcgatcagacaaga--gagagaaataaagggcatccaaatatgtaaagaagaagccaaactgtcactgtttgctgata---------------tgattgtatacctagaaaactctaaggactcctccaA
i macNem1.NW_012012100v1   C 0 I 14776
s cerAty1.NW_012002535v1     355639 1010 -    863181 -AAAGAAAAGATTCAACATGTAAATTTATCTGGAAAGGCC-GGGGAGGGGTGAGGTTGGCTAGAGACATGATTA-ATTCAGAGACTCAAATTTGTCATCAGA--GCTCTGTATTTCTAAAGAAGATAGTCAATATCAGCTTATcagctccagcttctct---attatcctatcttaacagcttcagcagaaaaatagacatctttctcacaatgttcataaataaagaaccagagaagatgacctttggactaatacctgttgttagggagatatggtacagtgtgggaaaccctgattggtcagggctgggtcatgtTATTTCCTCATCCCCTGGTCCATCATATTATTTCTTAAGTTATTTAAAGTCATGGCTATTATt----tttattttagttgacataattgtacatattaatatagtacagtgtgatattttgatacatgaatacaatgtgtaacaagcaaatcagg--------------------------gtatttagcacactcatcacatcaaacgtttaccatttctttatg-------------------------------atggaaacattcaaaatcAAatcaaaaagataatccaccacaatcaaatgggtttcataccagggaagcagggatggttgaacacacacaagtcaataaatgtgacacaccacataaacataattgaaaacaaaaatcacatgatcatctcaatagatgc-aaaaaaaaagcattcaacaaaatctggcatccctttatgattaaagctctcagcaaaatcggcatacaaggaacatacctcaatgtaataaaagctatt--------------tatgacaaacccacagccaacataatactgaatgaggaaaagttgagggcattccctctgagaactggaaaaagacaaggatgcctactctcaccacttctcttcaacacagtcctggaagtcctagccagagcgatcagacaaga--gaaagaaataaagggcatccaaatatgtaaagaagaagccaaactgtcactgtttgctgata---------------tgattgtatacctagaaaactctaaggactcctccaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29406751 1012 -  71996105 -AAAGAAAAGATTGAACATGTAAATTTATCTGGAAAGGCCAGGGGAAGGGTGAGGTTGGCTAGAGACATGATTA-ATTCAGAGACTCAAATTTGTCATCAGA--GCTCTGTATTTCTAAAGAAGATAGTCAATATCAGCTTATCAGCTCCAGCTTCTCT---ATTATCCTACCTTAACAGCTTCAGCAGAAAAATAGACATCTTTCTCACAATGTTCATAAATAAAGAACCAGAGAAGAAGACCTTTGGACTAATTCCTGTTGTTAGGGAGATATAGTACAGTGTGGGAAACCCTGATTGGTCAGGGTTGGGTCATGTTATTTCCTCATCCCCTGGTCCATCATGTTATTTCTTAAGTTATTTAAAGTTATGGCTATTATt----tttattttagttgacataattgtacatattaatatagtacagtgtgatattttgatacatgaatacaatgtgtaataagcaaatcagg--------------------------gtatttagcacactcatcacatcaaacgtttaccatttctttatg-------------------------------atggaaacattcaaaatcAAatcaaaaagataatccaccacaatcaaatgggtttcataccagggaagcagggatggttgaacacacacaagtcaataaatgtgacacaccacataaacataattgaaaacaaaaatcacatgatcatctcaatagatgcaaaaaaaaaagcattcaacaaaatctggcatccctttatgattaaagctctcagcaaaatcggcatacaaggaacatacctcaatgtaataaaagctatt--------------tatgacaaacccacagccaacataatactgaatgaggaaaagttgagggtattccctctgagaactggaaaaagacaaggatgcccactctcactacttctcttcaacacagtcctggaagtcctagccagagcgatcagacaaga--gaaagaaataaagggcatccaaatatgtaaagaagaagccaaactgtcactgtttgctgata---------------tgattgtatacctagaaaactctaaggactcctccaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     149377 1018 -   1829203 -AAAGAAAAGATTCAACATGTAAATTTATCTGGAAAGGCCAGGGGAGGGGTGAGGTTGGCTAGAGACATAATTA-ATTCAGAGACTCAAATTTGTCATCAGA--GCTCTGTATTTCTAAAGAAGATAGTCAATATCCGCTTATCAGCTCCAACTTCTCT---ATTATCCTACCTTAACAGCTTCAGCAGAAAAATAGATATCTTTCTCACAATGTTCATAAATAAAGAACCAGAGAAGATGACCTTTGGACTAATACCTGTTGTTAGGGAGATATGGTACAGTGTGGGAAACTCTGATTGGTCAGGGCTGGGTCATGTTATTTCCTCATCCCCTGGTCCATCATATTATTTCTTAAGTTATTTAAAGTCATGGCTATTATttttatttattttagttgacataattgtacatattaatatagtacagtgtgatatttttatacatgaatacaatgtgtaataagcaaatcagg--------------------------gcatttagcacactcatcacatcaaacgtttaccatttctttatg-------------------------------atggaaacattcaaaatcAAatcaaaaagataatccaccacaatcaaatgggtttcctaccagggaagcagggatggttgaacacacacaagtgaataaatgtgacacaccacataaacataattgaaaacaaaaatcacatgatcatttcaatagctgcaaaacaaaaagcattcaacaaaatctggcatccctttatgattaaagctctcagcaaaatcggcatacaaggaacatacctcaatgtaataaaagctatt--------------tatgacaaacccacagccaacacaatactgaatgaggaaaagctgaaagcattccctctgagaactggaaaaagacaaggatgcccactctcaccacttctcttcaacacagtcctggaagtcctagccagagcgatcagacaaaactgaaagaaataaagggcatccaaatatgtaaagaagaagccaaactgtcactgtttgctgata---------------tgattgtatacctagaaaactctaaggactcctccaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30322220 1028 + 171630274 AGAAGAAAAGATTCAACATGTAAatttatctgggaaggcc-----aggggtgaggctggctacagacatgattggattcagagactcaaatttgccattagatctctct-tacttcTAAAGAAGATAATCAGTATCAACTTATCAGCTCCAACTCCTCTCATATTATCTTACCTTAACAGCTTCAGCAGAAAAATAGACATCCTTCTCACAATGTTTACAAATAAAGAACCAGAGAAGATGACCTTTGGACCAGTACCTGTTGTTATGGAGATGCAGTATAGTGTGGGAAACCCTGATTGGTCAGGACTGGGTCATGTTATTTCCTCATCCCCTGGTCCATTATATGATTTCTTAAGTTATTTAAATTCATGGATATTATTTTTAACTAttttagttgacataattatacatattaatatagtacagtgtgatattttgatacatgtgtataatatgtaataagcaagacaga--------------------------gtatttagcatatgcatcatatcaaacatttaccatttctttgtg-------------------------------ttgaaaacattcaaaatcatatcaaaaaaataatccaccatgatcaagtgggttttataccagaaaagcagggatagtttaacataggcaagtcaataaatatgatataccacaaaaaaagaattaaaaacaaaaatcacatgatcatctcaatagctgc---agaaaaggcattcaacaaaatctggcatcccttgatgactaaagctctcagcaaaattgacatacaagggacatacctcaatgtaataaaagccattttactacaaatgtgtgtgtcaaacccacagccaacataatactgaatggggaaaagctgaaagcattccctctgagaactggaacaagacaaggatgcccactctcactacttctctgcaacacagtcctggaagtcctagtcgaagcaatcagacaaga--gaaagaaataaagggcatccaagtcagtaaagaggaagccaaactattgctgttcgctgata---------------tgattgtatacctaaaaaactctaaagactcctccaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           147795 1010 +    515838 AGAGGAAAAGATTCAAcatgtaaatttatctggaaaggcc-----aggggtgaggatggctacagacatgattggattcagagactcaaatttgtcatcagatctctctGTACTTCTAAAGAAGA----CAGTATCAACTTATCGGTTCCAACTCCTCTCATATTATCCTACCTTAACAGCTTCAGCAGAAAAATAGACATCTTTCTCACAATGTTTATAAATAAAGAACAAGAGAAGATGACCTTTGGACCAATACCTGTTGCTATGGAGATGTGGTACAGTGTGGGAAACCCTGATTGG--AGGACTGGGTCATGTTATTTTCTCATCCCCTGGTCCGTTATATTATTTCTCAAGTTATTTAAATTCATAGACATTATTTTTAACTAttttaattgacataattatacatattaatatagtacagtgtgatattttgatacatgtgtataatgtgtaataagcaagtcagg--------------------------gtgtttagcatatgcatcatatcaaacatttaccatttctatgtg-------------------------------atggaaacattcaaaatcatatcaaaaaaataatccaccatgatcaagtggttttcataccaggaaagcagggatggtttaacataggcaagtcaataaatgtgatacaccacaaaaaaagaattaaaaacaaaaatcaaatgatcatctcaatagatgc--aaaaaaaagcattcaaaaaaatctggcactgctttatgattaaagctctcagcaaaattgacatacaagggacatacttcaatgtaataaaagccatc--------------tatgacaaacccacagccaacataatactgaaaggggaaaagttgcaagcattccctctgagaactggaacaagacaaggatgcccactctcactacttctcttcaacacagtcctggaaatcctagccagagcaatcagacaaga--gaaagaaataaagggcatccaagtcagtaaagaggaagccaaactgttgctgtttgctgaca---------------tgattgtatacctaaaaaactctaaagactcctccaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     688779 1037 -   1771730 AAAAGAAAAGATTCAAcatgtaaatttatctggaaaggcc-----atgggtgaggatggctacagacatgattggattcagagactcaaatttgccatcagatctctctGTACTTCTAAAGAAGA----CAGTATCAACTTATCAGTTCCAACTCCTCTCATATTATCCTACCTTCACAGATTTAGAAGAAAAATAGACATCTTTCTCACAATGCTTATAAATAAAGAACCATAGAAGATGACCTTTGGACCAATATCTGTTGTTATGGAGATGCGGTACAGTGTGGGAAACCCTGATTGGTCAGGACTGGGTCATGTTATTTTCTCAT-CCCTGGTCCATTATATTATTTCTTAAGTTATTTAAATTCATGGATATTACTTTTAACTAGtttaattgacataattatacatattaatatagtacagt-tgatattttgatacatgtgtataacatgtaataagcaagtcaga--------------------------gtattcagcatatgcatcatatcaaatgtttaccatttccttgtgGTAAACGTTTGTGGTAAATGGGTAAATGTTTGTGGAAACattcaaaatcatatcaaaaaaa-aatccaccacgatcaagtgggtttcatagcagggaagcagggatggtttaacataggcaagtcaataaatgtgatacaccac--aaaaagaattaaaaacaaaaatcgcatgatcatctcaatagatgc---aaaaaaggcattcaacaaaatatggcatccctttatgattaaagctctcagcaaaatcgacatacaagggacatacctcaatgtaataaaagccatc--------------tatgtcaaacccacagccgacataatactgaatggggtaaagttgaaagcattcactctgagaactggaacaagacaaggatgcccactctcaccacttctcttcaacacagtcctggaagtcctagccagagcaatcagacaaga--gaaagaaataaagggcatccaagtcagtaaagaggaagccaaactgttgctgtttgctaata---------------tgattgtatacctaaaaaactctaaagactcctccaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     254489 1014 -    383796 AGAAGAAAAGATTCAACATGTAAatgtatctggaaaggcc-----aaggatgaggctggctacagacatgattggattcagagactcaaatttgtcatcagatctctctGTACTTCTAAAGAAGATAGTCAGTATCAACTTATCAGCTCCAACTCCTCTCATATTATCCTACCTTAACAGCTTCAGCAGAAAAATAGACATCTTTCTCACAATGTTTATAAATAAAGAACCACAGAAGATGACCTTTGGACCAATACCTGTTGTTATGGAGATGCGGCACAGTGTGGGAAACCCTGATTGGTCAGGACTGGGTCATGTTATTTCCTCATCCCCTGGTCCATTATATTATTTCTTAAGTTATTTAAATTCATGGACATTATTTTTAACTAttttaattgacataattatacatattaatatagtacagtgtgatattttgatacatgtgtataatatgtaataagcaagtcagg--------------------------gtatttaacatatgcatcatatcaaacatttaccacttctttgtg-------------------------------atggaaacattcaaaatcatatcaaaaaaa-aatccaccatgatcaagtgggttatataccagggaagcagggatggtttaacataggcaagtcaataaatgtgatacaccacaaaaaaagaattaaaaacaaaaatcacatgatcatctcaataaatgc---aaaaaaagcattcaacaaaatctggcaccactttatgattaaagctcttagcaaaattgacatacaagggacatacttcactgtaataaaagccatc--------------tatgacaaacccacagccaacataatactgaatggggaaaagttgaaagcattccctctgagaactggaacaagacaaggatgcccactctcactacttctcttcaacatagtcctggaagtcctagccagagcaatcagacaaga--gaaagaaataaagggcatccaagtcagtaaagaggaagccaaactgttgctgtttgctgata---------------tgattgtacgcctaaaaaactgtaaaaacacctccaa
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464    5 +  18854210 I
e manLeu1.NW_012107142v1     185579 9872 -    735854 I

a score=1553980.000000
s hg38.chr6_GL000254v2_alt  1370206 230 +   4827813 aaagctcctaaaactgatacaaaaattctgcaatatttctggatacaaaattaatgtacacaaatcagtagctctcctatactc-caacagtgaccaggctgagaatcaaatcaagaactcaatcccttttacgacagctgt-------aaaaaaaaaaaaaaaaa----aaaacaaacttagaaatatacctagcctaaggaggtgaaagacctctacaaggaaaactacaaaactctgct
s panTro5.chr6             30243598 226 + 175400573 aaagctcctaaaactgatacaaaaattctgcaatatttctggatacaaaattaatgtacacaaatcagtagctctcctatactc-caacagtgaccaggctgagaatcaaatcaagaactcaatcccttttacgacagctgt-------aaaaaaaaaaaaacaaa--------caaacttagaaatatacctagcctaaggaggtgaaagatctctacaaggaaaactacaaaacactgct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30474131 226 + 173848474 aaagctcctaaaactgatacaaaaattctgcaatatttctggatacaaaattaatgtacacaaatcagtagctctcctatactc-caacagtgaccaggctgagaatcaaatcaagaactcaatccc-tttacgacagctgt-------aaaaaaaaaaaaaaaaa-------acaaacttagaaatatacctagcctaaggaggtgaaagacctctacaaggaaaactacaaaacactgct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     180722 234 +   2037526 aaagctcctaaaactgatacaaaaattctgcaatatttctggatacaaaattaatgtacacaaatcagtagctctcctatactc-caacagtgaccaggctgagaatcaaatcaagaactcaatcccttttacaacagctgt-------aaaaaaaaaaaaaaaaaaaaaaaaaaaaacttagaaatatacctagcctaaggaggtgaaagacctctacaaggaaaactacaaaacactgct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74850255 234 + 122973662 aaagctcctaaaattgatacaaaaattctgcaacatttttggatacaaaattaatgtacacaaatcagtagctctcctatactc-caacagtgaccagtctgagaatcaaatcgagaactcaatcccttttacaatagctgt-------aacaaaacaaaacaaaacaagacaaaaaacttagaaatatacctggcctaaggaggtgaaagacctctacaaggaaaactacaaaacactgct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30708402 231 + 172585720 aaacctcctaaaactcataaaagaattctgcaacatttctggatacaaaattaatgtacacaaatcagtagctctcctatactc-caacagcgaccaggctgagaatcaaatcgagaactcaatccctttttcaatagctgc------aaacaaaacaaaacaaaa----caaaaccacttagaaatatacctaacctaaggaggtgaaagacctctacaaggaaaactacaaaacactgct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30007996 236 - 170955103 aaacctcctaaaactcataaaagaattctgcaacatttccggatacaaaattaatgtacaaaaatcagtagctctcctatactc-caacagcgaccaggctgagaatcaaattgagaactcaatccctttttcaatagctgc-aaacaaaacaaaacaaaacaaaa----caaaaccacttagaaatatacctaacctaaggaggtgaaagacctctacaaggaaaactacaaaacactgct
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     356649 237 -    863181 aaagctcctaaaactcataaaagaattctgcaacatttccggatacaaaattaatgtacacaaatcagtagctctcctatactc-caacagcgaccaggctgagaatcaaatcgagaactcaatccctttttcaatagctgcaaaacaaaacaaaacaaaacaaaa----caaaaccacttagaaatatacctaacctaaggaggtgaaagacctctacaaggaaaactacaaaacactgct
i cerAty1.NW_012002535v1   C 0 I 11057
s chlSab2.chr17            29407763 226 -  71996105 aaagctcctaaaactcataaaagaattctgcaacatttccggatacaaaattaatgtacacaaatcagtagttctcctatactc-caacagcgagcaggctgagaatcaaattgagaactcaatccctttttcaatagctgc-----------aaacaaaacaaaa----caaaaccacttagaaatatacctaacctaaggaggtgaaagacctctacaaggaaaactacaaaacactgct
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     150395 231 -   1829203 aaagctcctaaaactgatacaagaaatctgcaacatttccggatacaaaattaatgtacacaaatcagtagctctcctatactc-caacagcaaccaggctgagaatcaaatcgagaactcaatccctttttcaatagctgc------aaacaaaacaaaacaaaa----caaaaccacttagaaatatacttaacctaaggaggtgaaagacctctacaaggaaaactacaaaacactgct
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30323248 217 + 171630274 aaagctcctagaactgatacaagaattctgcaacatttctggatacaaaactaatgtacacaaatcagtagctctcctatactc-taacggtgaccagggtgagaatcaaatagagaactcaatcccttttacaatagcaga--------------------aaaa----aaaaaaatcttgtaaatatacctaacctaaggaggtgaaagacctctacaaggaaaactacaaaacactgct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           148805 211 +    515838 aaagctcctagaacagacacaagaattccgcaacatttctggatacaaaactaatgtacacaaatcagtagctctcctatactc-taacggtgaccagggtgagaatcaaatagagaactcaatcccttttataatagcagg--------------------aaaa----aaaa------tgtaaatatacctaacctaaggaggtgaaagacctctacaaggaaaactacaaaacgctgct
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     689816 217 -   1771730 aaagctcctagaactgatacaagaattctgcaacatttctggatacaaaactaatgtatgcaaatcagtagctctcctatactc-taacagtgatcagggtgagaatcaaatcaagaactcaatccctttcacaatagcaga--------------------aaaa----aaaaaaaacttataaatatgcctaacctaaggaggtgaaggacccctgcaaggaaaactacaaaacactgct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     255503 232 -    383796 aaagctcctagaactgatacaagaattctgcaacatttctggatacaaaactaatgtacacaaatcagtagctctcctatactcttaacagtgaccaaggtgagaatcaaatagagaactcaatcgcttttacaatagtgga------acaaacaaacaaacaaac----aaaaacaacttgtaaatatacctaacctaaggaggtgaaagacctctacaaggaaaactacaaaacactgct
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I
e manLeu1.NW_012107142v1     185579 9872 -    735854 I
e macNem1.NW_012012100v1     234642 14776 +   1495729 I

a score=29094.000000
s hg38.chr6_GL000254v2_alt  1370436 4 +   4827813 gaaa
s panTro5.chr6             30243824 4 + 175400573 gaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30474357 4 + 173848474 gaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     180956 4 +   2037526 gaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74850489 4 + 122973662 gaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30708633 4 + 172585720 gaaa
i rheMac8.chr4             C 0 I 13437
s macFas5.chr4             30008232 4 - 170955103 gaaa
i macFas5.chr4             C 0 I 18749
s chlSab2.chr17            29407989 4 -  71996105 gaaa
i chlSab2.chr17            C 0 N 0
s colAng1.NW_012115577v1     150626 4 -   1829203 gaaa
i colAng1.NW_012115577v1   C 0 I 17120
s calJac3.chr4             30323465 4 + 171630274 gaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           149016 4 +    515838 gaaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     690033 4 -   1771730 gaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     255735 4 -    383796 gaaa
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464 5 +  18854210 I
e manLeu1.NW_012107142v1     185579 9872 -    735854 I
e cerAty1.NW_012002535v1     356886 11057 -    863181 I
e macNem1.NW_012012100v1     234642 14776 +   1495729 I

a score=16704.000000
s hg38.chr6_GL000254v2_alt  1370440 5 +   4827813 gaaat
s panTro5.chr6             30243828 5 + 175400573 gaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30474361 5 + 173848474 gaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     180960 5 +   2037526 gaaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74850493 5 + 122973662 gaaat
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30323469 5 + 171630274 gaaat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           149020 5 +    515838 gaaat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     690037 5 -   1771730 gaaat
i cebCap1.NW_016107755v1   C 0 N 0
s aotNan1.NW_018496904v1     255739 5 -    383796 gaaat
i aotNan1.NW_018496904v1   C 0 I 17815
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464 5 +  18854210 I
e colAng1.NW_012115577v1     150630 17120 -   1829203 I
e manLeu1.NW_012107142v1     185579 9872 -    735854 I
e cerAty1.NW_012002535v1     356886 11057 -    863181 I
e macNem1.NW_012012100v1     234642 14776 +   1495729 I
e macFas5.chr4             30008236 18749 - 170955103 I
e rheMac8.chr4             30708637 13437 + 172585720 I

a score=17417.000000
s hg38.chr6_GL000254v2_alt  1370445 10 +   4827813 cacagatgac
s panTro5.chr6             30243833 10 + 175400573 cacagatgac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30474366 10 + 173848474 cacagatgac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     180965 10 +   2037526 cacagatgac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74850498 10 + 122973662 cacagatgac
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30323474 10 + 171630274 tatagatgac
i calJac3.chr4             C 0 I 12818
s saiBol1.JH378341           149025 10 +    515838 tatagatgac
i saiBol1.JH378341         C 0 I 8846
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464  5 +  18854210 I
e aotNan1.NW_018496904v1     255744 17815 -    383796 I
e colAng1.NW_012115577v1     150630 17120 -   1829203 I
e manLeu1.NW_012107142v1     185579 9872 -    735854 I
e cerAty1.NW_012002535v1     356886 11057 -    863181 I
e macNem1.NW_012012100v1     234642 14776 +   1495729 I
e macFas5.chr4             30008236 18749 - 170955103 I
e rheMac8.chr4             30708637 13437 + 172585720 I

a score=4701820.000000
s hg38.chr6_GL000254v2_alt  1370455 5331 +   4827813 [encoded data, 5515 characters]
s panTro5.chr6             30243843 5324 + 175400573 [encoded data, 5515 characters]
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30474376 5314 + 173848474 [encoded data, 5515 characters]
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     180975 5342 +   2037526 [encoded data, 5515 characters]
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74850508 5453 + 122973662 [encoded data, 5515 characters]
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           149035 8846 +    515838 I
e otoGar3.GL873550           213464    5 +  18854210 I
e aotNan1.NW_018496904v1     255744 17815 -    383796 I
e calJac3.chr4             30323484 12818 + 171630274 I
e colAng1.NW_012115577v1     150630 17120 -   1829203 I
e manLeu1.NW_012107142v1     185579 9872 -    735854 I
e cerAty1.NW_012002535v1     356886 11057 -    863181 I
e macNem1.NW_012012100v1     234642 14776 +   1495729 I
e macFas5.chr4             30008236 18749 - 170955103 I
e rheMac8.chr4             30708637 13437 + 172585720 I

a score=48720.000000
s hg38.chr6_GL000254v2_alt  1375786 5 +   4827813 aagaa
s panTro5.chr6             30249167 5 + 175400573 aagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30479690 5 + 173848474 aagaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     186317 5 +   2037526 aagaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74855961 5 + 122973662 aagaa
i nomLeu3.chr1a            C 0 I 3115
s rheMac8.chr4             30722074 5 + 172585720 AAGAA
i rheMac8.chr4             I 13437 C 0
s macNem1.NW_012012100v1     249418 5 +   1495729 AAGAA
i macNem1.NW_012012100v1   I 14776 C 0
s cerAty1.NW_012002535v1     367943 5 -    863181 AAGAA
i cerAty1.NW_012002535v1   I 11057 C 0
s chlSab2.chr17            29527152 5 -  71996105 AAGAA
i chlSab2.chr17            N 0 C 0
s manLeu1.NW_012107142v1     195451 5 -    735854 AAGAA
i manLeu1.NW_012107142v1   I 9872 C 0
s colAng1.NW_012115577v1     167750 5 -   1829203 AAGAA
i colAng1.NW_012115577v1   I 17120 C 0
s calJac3.chr4             30336302 5 + 171630274 AAGAA
i calJac3.chr4             I 12818 C 0
s saiBol1.JH378341           157881 5 +    515838 AAGAA
i saiBol1.JH378341         I 8846 C 0
s cebCap1.NW_016107755v1     794356 5 -   1771730 AAGAA
i cebCap1.NW_016107755v1   N 0 C 0
s aotNan1.NW_018496904v1     273559 5 -    383796 AAGAA
i aotNan1.NW_018496904v1   I 17815 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464 5 +  18854210 I
e macFas5.chr4             30008236 18749 - 170955103 I

a score=3012061.000000
s hg38.chr6_GL000254v2_alt  1375791 424 +   4827813 A-----GTTAACATTGATTTTGAACATTTCAAACCAATTAATACATCATTGTATTTGTGTGACAACAAATTCCATACAGAAGCTCTTACAGCACTACTTTCAGATGAAAGCAAGTCTGGATTCATCGTAATAGATGGTAGTGGTGCACTTTTTGGCACCCTCCAAGGAAACACAAGAGAAGTCCTGCAAAAACTCACTGTGGATCTCCCAAAGAAACACGGTA---AAGGTCAGTCAGCCTTGCGTTTTGCCTGTTTAAGAATGGAAAAGTGACCTAACAATGTTCAGAAAGTAGCAGAGACTGCTGTGCAGCTGTTTATTTCTGGGGACAAAGGGAAGGTGGCTGGTCTAGTTTTAGCTGGATCCGCTGACTTTAAAACTGAACTAAGTCAATCTGATACGTTTGATCAGCGGTTACAATCGAAAGTTTTA
s panTro5.chr6             30249172 428 + 175400573 AAGAAAGTTAACATTGATTTTGAACATTTCAAACCAATTAATACGTCATTGTATTTGTGTGACAACAAATTCCATACAGAAGCTCTTACAGCACTACTTTCAGATGAAAGCAAGTCTGGATTCATTGTAATAGATGGTAGTGGTGCACTTTTTGGCACCCTCCAAGGAAACACAAGAGAAGTCCTGCAAAAACTCACTGTGGATCTCCCAAAGAAACACGGTA---AAGGTCAGTCAGCCTTGCGTTT-GCCTGTTTAAGAATGGAAAAGTGACCTAACAATGTTCAGAAAGTAGCAGAGACTGCTGTGCAGCTGTTTATTTCTGGGGACAAAGGGAAGGTGGCTGGTCTAGTTTTAGCTGGATCCGCTGACTTTAAAACTGAACTAAGTCAATCTGATACGTTTGATCAGCGGTTACAATCGAAAGTTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30479695 428 + 173848474 AAGAAAGTTAACATTGATTTTGAACATTTCAAACCAATTAATACGTCATTGTATTTGTGTGACAACAAATTCCATACAGAAGCTCTTACAGCACTACTTTCAGATGAAAGCAAGTCTGGATTCATTGTAATAGATGGTAGTGGTGCACTTTTTGGCACCCTCCAAGGAAACACAAGAGAAGTCCTGCAAAAACTCACTGTGGATCTCCCAAAGAAACACGGTA---AAGGTCAGTCAGCCTTGCGTTT-GCCTGTTTAAGAATGGAAAAGTGACCTAACAATGTTCAGAAAGTAGCAGAGACTGCTGTGCAGCTGTTTATTTCTGGGGACAAAGGGAAGGTGGCTGGTCTAGTTTTAGCTGGATCCGCTGACTTTAAAACTGAACTAAGTCAATCTGATACGTTTGATCAGCGGTTACAATCGAAAGTTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     186322 429 +   2037526 AAGAAAGTTAACATTGATTTTGAACATTTCAAACCAATTAATACATCATTGTATTTGTGTGACAACAAATTCCATACAGAAGCTCTTACAGCACTACTTTCACATGAAAGCAAGTCTGGATTCATTGTAATAGATGGTAGTGGTGCACTTTTTGGCACCCTCCAAGGAAACACAAGAGAAGTCCTGCAAAAACTCACTGTGGATCTCCCAAAGAAACACGGTA---AAGGTCAGTCAGCCTTGCGTTTTGCTTGTTTAAGAATGGAAAAGTGACCTAACAATGTTCAGAAAGTAGCAGAGACTGCTGTGCAGCTGTTTATTTCTGGGGACAAAGGGAAGGTGGCTGGTCTAGTTTTAGCTGGATCCGCTGACTTTAAAACTGAACTAAGTCAATCTGATACGTTTGATCAGCGGTTACAATCGAAAGTTTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30722079 427 + 172585720 -----AGTTAACGTTGATTTTGAACCTTTCAAACCAATTAATACGTCATACTATTTGTGTGACAACAAAATCCATACAGAGGCTCTTACAGCACTAATTTCAGATGACAGCAAGTTTGGATTCATTGTAATAGATGGTAGTGGTGCACTTTTTGGCACACTCCAAGGAAACACAAAAGAAGTCCTGCAAAAATTCACTGTGGATCTCCCAAAGAAACACGGTAGAGGAGGTCAGTCAGCCTTGTGTTTTGCCCGTTTAAGAATGGAAAAGCGATCTAACAATGTTCAGAAAGTAGCAGAGAACGCTGTGCAGGTGTTTATTTCTGGGGACGAAGGGAAGATTGCTAGTCTAGTTTTAGCTGGATCCACTGACTTTAAAACTGAACTAAATCACTATGATATGTTTGATCAGAGGTTACAATCGAAAGTTTTA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     249423 421 +   1495729 -----AGTTAACGTTGATTTTGAACCTTTCAAACCAATTAATACGTCAT-CTATTTGTGTGACAACAAAATCCATACAGAGGCTCTTACAGCACTACTTTCAGATGACAGCAAGTTTGGATTCATTGTAATAGATGGTAGTGGTGCACTTTTTGGCACACTCCAAGGAAACACAAAAGAAGTCCTGCAAAAATTCACTGTGGATCTCCCAAAGAAACACGGTAGAGGAGGTCAGTCAGCCTTGTGTTTTTCCCATTTAAGAATGGAAAAGCGATCTAACAATGTTCAGAAAGTAGCAGAGAATGCTGTGCAGCTGTTTATTTCTGGGGACGAAGGGAAGATTGCTAGTCTACTTTTAGCTGGATCCACTGACTTTAAAACTGAACTAAATCAC-----TATGTTTGATTAGAGGTTACAATCGAAAGTTTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     367948 427 -    863181 -----AGTTAAGGTTGATTTTGAACCTTTCAAACCAATTAATACGTCATACTATTTGTGTGACAACAAATTCCATACAGAGGCTCTTACAGCACTACTTTCAGATGACAGCAAGTTTGGATTCATTGTAATAGATGGTAGTGGTGCACTTTTTGGCACACTCCAAGGAAACACAAAAGAAGTCCTGCAAAAATTCACTGTGGATCTCCCAAAGAAACACGGTAGAGGAGGTCAGTCAGCCTTGTGTTTTGCCCATTTAAGAATGGAAAAGCGACCTAACAATGTTTAGAAAGTAGCAGACAACGCTGTGCAGCTGTTTATTTCTGGGGACAAAGGGAAGATTGCTGGTCTAGTTTTAGCTGGATCCACTGACTTTAAAACTGAACTAAATCACTATGATATGTTTGATCAGAGGTTACAATCGAAAGTTTTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29527157 426 -  71996105 -----AGTTAACGTTGATTTTGAACCTTTCAAACCAATTAATACGTCAT-CTATTTGTGTGACAACAAATTCCATACAGAGGCTCTTACAGCACTACTTTCAGATGACAGCAAGTTTGGATTCATTGTAATAGATGGTAGTGGTGCACTTTTTGGCACACTCCAAGGAAACACAAAAGAAGTCCTGCAAAAATTCACTGTGGATCTCCCAAAGAAACATGGTAGAGGAGGTCAGTCAGCCTTGTGTTTTGCCCGTTTAAGAATGGAAAAACGACCTAACAATGTTCAGAAAGTAGCAGAGAATGCTGTGCAGCTGTTTATTTCTGGGGATGAAGGGAAGATGACTGGTCTAGTTTTAGCTGGATCCGCTGACTTTAAAACTGAACTAAATCAATATGATATGTTTGATCAGGGGTTACAATCGAAAGTTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     195456 427 -    735854 -----AGTTAACGTTGATTTTGAACCTTTCAAACCAATTAATACGTCATACTATTTGTGTGACAACAAATTCCATACAGAGGCTCTTACAGCACTACTTTCAGATGACAGGAAGTTTGGATTCATTGTAATAGATGGTAGTGGTGCACTTTTTGGCACACTCCAAGGAAACACAAAAGAAGTCCTGCAAAAATTCACTGTGGATCTCCCAAAGAAACATGGTAGAGGAGGTCAGTCAGCCTTGTGTTTTGCCCGTTTAAGAATGGAAAAGCGATCTACCAATGTTCAGAAAGTAGCAGAGAACGCTGTGCAGCTGTTTATTTCTGGGGACGAAGGGAAGATTGCTAGTCTAGTTTTAGCTGGATCCACTGACTTTAAAACTGAACTAAATCACTATGATACGTTTGATCAGAGGTTACAATCGAAAGTTTTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     167755 427 -   1829203 -----AGTTAACATTGATTTTGAACCTTTCAAACCAATTAATACGTCATACTATTTGTGTAACAACAAATTCCATACAGAGGTTCTTACAGCACTACTTTCAGATGATAGCAAGTTTGGATTCATTGTAATAGATGGTAGTGGTGCACTTTTTGGCACACTCCAAGGAAACACAAAAGAAGTCCTGCAAAAATTCACTGTGGATCTCCCAAAGAAACACGGTAGAGGAGGTCAGTCAGCCTTGTGTTTTGTCCGTTTAAGAATGGAAAAGCGACCTAACAATGTTCAGAAAGTAGCAGAGAATGCTGTGCAGCTGTTTATTTCTGGGGACGAAGGGAAGATGGCTGGTCTAGTTTTAGCTGGATCCGCTGACTTTAAAACTGAACTAAATCAATATGATATGTTTGATCAGAGGTTACAATCGAAAGTTTTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30336307 418 + 171630274 -----AATCAATATTGACTTTGAACCTTTCAAACCAATTAATACGTCATTGTATTTGTGTGACAACAAATTCCATACAGAGGCTATTACAGCACTACTTT-TGATGAC-CCAAGTTTGTATTCACTGTAATAGATGGTAGTGGTGCACATTTTGGTGCACGCCACGGAAACACAAGAGAAGTTCTACACAAATTCACTGCGGATCTCCCAAAGAAACACGGTAGAGGAGGTCAGTCAGCCTTGCGTTTTGCCCATTTAAGAATGGAAAAGCAACATAA-------CGGAAAGTAGAAGAGACTGCTGTGCAGCTGTTTATTTCTGGGGACAAAGTGAATGTGGCTGGTCTAGTTTTAGCTGGATCCACTGACTTTAAAACTGAACTAAGTCAATCTGATATGTTTGATCAGAGGTTACAATGGAAAGTTTTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           157886 385 +    515838 -----AGTCAATATTGACTTTGAAACTTTCAAACCAATTAATATGTCATTGTATTTGTGTGACAACAAATTCCATACAAAGGTTCTTACAGCACTACTTTCTGATGAG-GCAAGTTTGGATTCACTGTAATAGACGGTAGTGGTGCACCTTTTGACACACGCCACAGAAACACAAGAGAAGTTCTGCACAAATTCACTGTGGATCTCCCAAAGAAACATGATAGAGGAGTTCAGTCAGCCTTGCGTTTTGCCCATATCAGAATGGAAACGCGACATAACTATGCTCGGAAAGTAGCAGAGACTGCTGTGCAGCTGTTTATTTCTGGGGACAAAGTGAATGTGGCTGGTATAGTTTTAGCTAGATCCACTGACTTTAAAACTGAACTAAGTC-----------------------------------------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     794361 419 -   1771730 -----AGTCCATATTGACTTTGAACCTTTCAAACCAATTAATACGTCATCGTATTTGTGTGACAACAAATTCCATACAGAGGCTCTTACAGCACTGCTTTCTGATGAC-GCAAGTTTGGATTCACTGTAATAGACAGTAGTGGGGCACCTTTTGGCACACGTCACGGAAACACAAGAGAAGTTCTACACAAATTCACTGCGGATCTTCCAAAGAAACACGGTAGAGGAGGTCAGTCAGCCTTGCGTTTTGCCCATTTAAGAATGGAAAAGCAACATAA-------CGGAAAGTAGCAGAGACTGCTGTGCAGCTGTTTATTTCTGGGGACAAAGTGAATGTGGCTGGTCTAGTTTTAGCTGGATCCACTGACTTTAAAACTGAACTAAGTCAATCTGATATGTTTGATCAGAGGTTACAATGGAAAGTTTTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     273564 413 -    383796 -----AGTCAATATTGACTTTGAACCTTTCAAACCAATTAATATATCATCGTATTTGTGTGACAACAAATTCCATACAGAGGCTCTTACAGCACTACTTTCTGATGAC-GCAAGTTTGGATTCACTGTAATAGATGGTAGTGGTGCACCTTTTGGCACACGCCAAGGAAACATGAGAGAAGTTCTGCACAAATTCACTGCGGATCTCCCAAAGAAACACGGTAGAGGAGGTCAGTCAGCCTTGCGTTTTGCCCATTTAAGAATGGAAAAGCAACATAA-------CAGAAAGTAGCAGAGACTGCTGTGCAGCTGTTTACTTCTGAGGACAAAGTGAATGTGGCTGGTCTAGT------CGGATCCACTGACTTTAAAACTGAACTAAGTCAATCTGATACGTTTGATCAGAGGTTACAATGGAAAGTTTTA
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I
e macFas5.chr4             30008236 18749 - 170955103 I
e nomLeu3.chr1a            74855966 3115 + 122973662 I

a score=14510.000000
s hg38.chr6_GL000254v2_alt  1376215 4 +   4827813 -AAAT
s panTro5.chr6             30249600 4 + 175400573 -AAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30480123 4 + 173848474 -AAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     186751 4 +   2037526 -AAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30722506 4 + 172585720 -AAAT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     249844 4 +   1495729 -AAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     368375 4 -    863181 -AAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29527583 4 -  71996105 -AAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     195883 4 -    735854 -AAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     168182 4 -   1829203 -AAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30336725 4 + 171630274 AAAA-
i calJac3.chr4             C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           158271 0 +    515838 C
e otoGar3.GL873550           213464 5 +  18854210 I
e aotNan1.NW_018496904v1     273977 0 -    383796 C
e cebCap1.NW_016107755v1     794780 0 -   1771730 C
e macFas5.chr4             30008236 18749 - 170955103 I
e nomLeu3.chr1a            74855966 3115 + 122973662 I

a score=37665.000000
s hg38.chr6_GL000254v2_alt  1376219 9 +   4827813 TAGTTGATA
s panTro5.chr6             30249604 9 + 175400573 TAGTTGATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30480127 9 + 173848474 TAGTTGATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     186755 9 +   2037526 TAGTTGATA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30722510 9 + 172585720 TAGTTGATA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     249848 9 +   1495729 TAGTTGATA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     368379 9 -    863181 TAGTTGATA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29527587 9 -  71996105 TAGTTGATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     195887 9 -    735854 TAGTTGATA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     168186 9 -   1829203 TAGTTGATA
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           158271 0 +    515838 C
e otoGar3.GL873550           213464 5 +  18854210 I
e aotNan1.NW_018496904v1     273977 0 -    383796 C
e cebCap1.NW_016107755v1     794780 0 -   1771730 C
e calJac3.chr4             30336729 0 + 171630274 C
e macFas5.chr4             30008236 18749 - 170955103 I
e nomLeu3.chr1a            74855966 3115 + 122973662 I

a score=642567.000000
s hg38.chr6_GL000254v2_alt  1376228 117 +   4827813 ggccgggcgtggtggctcatgcctgtaatcccagcactttgggaggccaaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtgtctac
s panTro5.chr6             30249613 117 + 175400573 ggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggccaaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30480136 117 + 173848474 ggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggccaaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     186764 117 +   2037526 ggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggccaaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74859081 117 + 122973662 ggctgggtgtggtggctcacacctgtaatcccagcactttgggaggccgaggtgggtggatcacaaggtcaggagatcgaggccatcctggctaacatggtgaaaccctgtctctac
i nomLeu3.chr1a            I 3115 C 0
s rheMac8.chr4             30722519 117 + 172585720 ggcctggcacagtggctcacgactgtaatcccagcactttgggaggccgaggtgggtggatcatgaggtcaggagatcaagaccatcctggctaacacggtgaaaccctgtctctac
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     249857 116 +   1495729 ggcctggtgcagtggctcacgactgtaatcccagcactttgggaggccgaggtgggtggatcatgaggtcaggagatcaagaccatcctggctaacttggtgaaaccc-gcctctgc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     368388 117 -    863181 ggcctggcgcagtggctcacgactgtaatcccagcactttgggaggccgaggcaggtggatcatgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccgtctctac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29527596 117 -  71996105 ggcctggcgcggtggctcacgactgtaatcccagcactttgggaggctgaggcgggcagatcatgaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     195896 117 -    735854 ggcctggcgcagtggctcacgactgtaatcccagcactttgggaggccgaggtgggtggatcatgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccgtctctac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     168195 117 -   1829203 ggtcaggcacggtggctcacgactgtaatcccagcactttgggaggctgaggcgggcggatcatgaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctac
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           158271 117 +    515838 ggccgggcgtgatggctcacacctgtaatcccagcacgttgggaggcagaggcgggtggatcacgaggtcaagagatcgagatcatcctggtcaacatggcgaaaccccgtctatac
i saiBol1.JH378341         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I
e aotNan1.NW_018496904v1     273977   0 -    383796 C
e cebCap1.NW_016107755v1     794780   0 -   1771730 C
e calJac3.chr4             30336729   0 + 171630274 C
e macFas5.chr4             30008236 18749 - 170955103 I

a score=7098.000000
s hg38.chr6_GL000254v2_alt  1376345 1 +   4827813 t
s panTro5.chr6             30249730 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30480253 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     186881 1 +   2037526 t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74859198 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30722636 1 + 172585720 t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30026985 1 - 170955103 t
i macFas5.chr4             I 18749 C 0
s macNem1.NW_012012100v1     249973 1 +   1495729 t
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     368505 1 -    863181 t
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29527713 1 -  71996105 t
i chlSab2.chr17            C 0 I 6155
s manLeu1.NW_012107142v1     196013 1 -    735854 t
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     168312 1 -   1829203 t
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           158388 1 +    515838 t
i saiBol1.JH378341         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464 5 +  18854210 I
e aotNan1.NW_018496904v1     273977 0 -    383796 C
e cebCap1.NW_016107755v1     794780 0 -   1771730 C
e calJac3.chr4             30336729 0 + 171630274 C

a score=21792.000000
s hg38.chr6_GL000254v2_alt  1376346 4 +   4827813 aaaa
s panTro5.chr6             30249731 4 + 175400573 aaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30480254 4 + 173848474 aaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     186882 4 +   2037526 aaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74859199 4 + 122973662 gaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30722637 4 + 172585720 aaaa
i rheMac8.chr4             C 0 I 6179
s macFas5.chr4             30026986 4 - 170955103 atat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     249974 4 +   1495729 aaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     368506 4 -    863181 aaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29533869 4 -  71996105 aaaa
i chlSab2.chr17            I 6155 C 0
s manLeu1.NW_012107142v1     196014 4 -    735854 aaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     168313 4 -   1829203 aaaa
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           158389 4 +    515838 aaaa
i saiBol1.JH378341         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464 5 +  18854210 I
e aotNan1.NW_018496904v1     273977 0 -    383796 C
e cebCap1.NW_016107755v1     794780 0 -   1771730 C
e calJac3.chr4             30336729 0 + 171630274 C

a score=47374.000000
s hg38.chr6_GL000254v2_alt  1376350 11 +   4827813 atacaaaaaca
s panTro5.chr6             30249735 11 + 175400573 acacaaaaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30480258 11 + 173848474 atacaaaaaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     186886 11 +   2037526 atacaaaaaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74859203 10 + 122973662 atacaaaaat-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30728820 11 + 172585720 atacaaaaaca
i rheMac8.chr4             I 6179 C 0
s macFas5.chr4             30026990 11 - 170955103 aCACAAAAACa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     249978  6 +   1495729 ataca-----a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     368510 11 -    863181 atacaaaaaCA
i cerAty1.NW_012002535v1   C 0 I 3019
s chlSab2.chr17            29533873 11 -  71996105 atacaaaaaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     196018 11 -    735854 atacaaaaaCA
i manLeu1.NW_012107142v1   C 0 I 792
s colAng1.NW_012115577v1     168317 11 -   1829203 atacaaaaaCA
i colAng1.NW_012115577v1   C 0 M 2922
s saiBol1.JH378341           158393  7 +    515838 atacaaa----
i saiBol1.JH378341         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464  5 +  18854210 I
e aotNan1.NW_018496904v1     273977  0 -    383796 C
e cebCap1.NW_016107755v1     794780  0 -   1771730 C
e calJac3.chr4             30336729  0 + 171630274 C

a score=145384.000000
s hg38.chr6_GL000254v2_alt  1376361 46 +   4827813 aaattagctgggcgtggtggcgggtgcctgtggtcccagctacttg
s panTro5.chr6             30249746 46 + 175400573 aaattagctgggcgtggtggcgggtgcctgtggtcccagctacttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30480269 46 + 173848474 aaattagctgggcgtggtggcgggtgcctgtggtcccagctacttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     186897 46 +   2037526 aaattagctgggcgtggtggcgggtgcctgtggtcccagctacttg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74859213 43 + 122973662 ---ttagccaggcatggtggtgggtgcctgtagtcccagctacttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30728831 46 + 172585720 aaatcagccgggcgcggtggcggacgcctgtcgtcccaactactca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30027001 46 - 170955103 aaatcagccgagcgcggtggcggacgcctgttgtcccaactactca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     249984 46 +   1495729 aaattagttgggcgtggcagcgtgcacctgcagtcccagctacttg
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29533884 46 -  71996105 aaattagccaggcgtggtggcagacacctgtagtcccaactactgg
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341           158400 46 +    515838 aaaatagctgggcatggtggtgcgtgcctgtaatctcagctactca
i saiBol1.JH378341         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464  5 +  18854210 I
e aotNan1.NW_018496904v1     273977  0 -    383796 C
e cebCap1.NW_016107755v1     794780  0 -   1771730 C
e calJac3.chr4             30336729  0 + 171630274 C
e colAng1.NW_012115577v1     168328 2922 -   1829203 M
e manLeu1.NW_012107142v1     196029 792 -    735854 I
e cerAty1.NW_012002535v1     368521 3019 -    863181 I

a score=229616.000000
s hg38.chr6_GL000254v2_alt  1376407 52 +   4827813 ggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagcga
s panTro5.chr6             30249792 52 + 175400573 ggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagcga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30480315 52 + 173848474 ggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagcga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     186943 52 +   2037526 ggagtctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagcga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74859256 52 + 122973662 ggaggctgaggcaagagaatggcgtgaacctgggaggtggagcttgcagcga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30728877 52 + 172585720 ggaggctgaggcaggagaatggcgtgaaccgaggaagcggagcttgcagtga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30027047 52 - 170955103 ggaggctgaggcaggagaatggcgtgaacccaggaagcagagcttgcagtga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     250030 52 +   1495729 ggaggctgaggcaggagaatttcttgaacccaggaggcggaggctgcagtga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     371540 52 -    863181 ggaggctgaggccggagaatggcgtgaacccaggaagcagagcttgcagtga
i cerAty1.NW_012002535v1   I 3019 C 0
s chlSab2.chr17            29533930 52 -  71996105 ggaggctgaggcaggagactggcgtgaacccgggaagtggagcttgcagtga
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341           158446 52 +    515838 ggaggctgaggcaggagaattgccagaacctgggaggcggaggttgcggtga
i saiBol1.JH378341         C 0 I 318
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464  5 +  18854210 I
e aotNan1.NW_018496904v1     273977  0 -    383796 C
e cebCap1.NW_016107755v1     794780  0 -   1771730 C
e calJac3.chr4             30336729  0 + 171630274 C
e colAng1.NW_012115577v1     168328 2922 -   1829203 M
e manLeu1.NW_012107142v1     196029 792 -    735854 I

a score=36703.000000
s hg38.chr6_GL000254v2_alt  1376459 12 +   4827813 gcccagatcaca
s panTro5.chr6             30249844 12 + 175400573 gccgagatcaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30480367 12 + 173848474 gccgagatcaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     186995 12 +   2037526 gccgagatcaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74859308 12 + 122973662 gccgagatcaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30728929 12 + 172585720 gccaagatggcg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30027099 12 - 170955103 gccaagatggcg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     250082 12 +   1495729 gccgagatcgca
i macNem1.NW_012012100v1   C 0 I 12528
s cerAty1.NW_012002535v1     371592 12 -    863181 gccaagatggcg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29533982 12 -  71996105 gccgagatggca
i chlSab2.chr17            C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           158498 318 +    515838 I
e otoGar3.GL873550           213464  5 +  18854210 I
e aotNan1.NW_018496904v1     273977  0 -    383796 C
e cebCap1.NW_016107755v1     794780  0 -   1771730 C
e calJac3.chr4             30336729  0 + 171630274 C
e colAng1.NW_012115577v1     168328 2922 -   1829203 M
e manLeu1.NW_012107142v1     196029 792 -    735854 I

a score=171483.000000
s hg38.chr6_GL000254v2_alt  1376471 51 +   4827813 ccactgcactcccgcctgggcaacacggcaagactcagtctc--------aaaaaaaag
s panTro5.chr6             30249856 51 + 175400573 ccactgcactcccgcctgggcaacacagcaagactcagtctc--------aaaaaaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30480379 51 + 173848474 ccactgcactcccgcctgggcaacacagcaagactcagtctc--------aaaaaaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     187007 51 +   2037526 ccactgcactcccgcctgggcagcacagcaagactcagtctc--------aaaaaaaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74859320 54 + 122973662 ccactgcactcccgcctgggcgacacagcaagactccgtctc-----aaaaaaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30728941 51 + 172585720 ccactgcactccagcccgggcgacagcgcgagactctgtctc--------aaaaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30027111 51 - 170955103 ccactgcactccagcccgggcgacagtgcgagactctgtctc--------aaaaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     262622 59 +   1495729 ccactgcactccagcctgggcgacagcgcgagactctgtctcaaaaaaaaaaaaaaaaa
i macNem1.NW_012012100v1   I 12528 C 0
s cerAty1.NW_012002535v1     371604 51 -    863181 ccactgcactccagcccgggcgacagcgcgagactctgtctc--------aaaaaaaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29533994 51 -  71996105 ccactgcactccagcctgggtaacagagagagactccgtctc--------aaaaaaaaa
i chlSab2.chr17            C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           158498 318 +    515838 I
e otoGar3.GL873550           213464  5 +  18854210 I
e aotNan1.NW_018496904v1     273977  0 -    383796 C
e cebCap1.NW_016107755v1     794780  0 -   1771730 C
e calJac3.chr4             30336729  0 + 171630274 C
e colAng1.NW_012115577v1     168328 2922 -   1829203 M
e manLeu1.NW_012107142v1     196029 792 -    735854 I

a score=19832.000000
s hg38.chr6_GL000254v2_alt  1376522 4 +   4827813 aaaT
s panTro5.chr6             30249907 4 + 175400573 aaaT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30480430 4 + 173848474 aaaT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     187058 4 +   2037526 aaaT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74859374 4 + 122973662 aaaT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30728992 4 + 172585720 aaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30027162 4 - 170955103 aaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     262681 4 +   1495729 aaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     371655 4 -    863181 aaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29534045 4 -  71996105 aaaa
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341           158816 4 +    515838 AAAT
i saiBol1.JH378341         I 318 C 0
s cebCap1.NW_016107755v1     794780 4 -   1771730 AAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     273977 4 -    383796 AAAT
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464 5 +  18854210 I
e calJac3.chr4             30336729 0 + 171630274 C
e colAng1.NW_012115577v1     168328 2922 -   1829203 M
e manLeu1.NW_012107142v1     196029 792 -    735854 I

a score=3817.000000
s hg38.chr6_GL000254v2_alt  1376526 2 +   4827813 TA
s panTro5.chr6             30249911 2 + 175400573 TA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30480434 2 + 173848474 TA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     187062 2 +   2037526 TA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74859378 2 + 122973662 TA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30728996 2 + 172585720 aa
i rheMac8.chr4             C 0 I 1644
s macFas5.chr4             30027166 2 - 170955103 aG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     262685 2 +   1495729 aG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     371659 2 -    863181 aa
i cerAty1.NW_012002535v1   C 0 I 3
s calJac3.chr4             30336729 2 + 171630274 TA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           158820 2 +    515838 TA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     794784 2 -   1771730 TA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     273981 2 -    383796 TA
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464 5 +  18854210 I
e colAng1.NW_012115577v1     168328 2922 -   1829203 M
e manLeu1.NW_012107142v1     196029 792 -    735854 I
e chlSab2.chr17            29534049 0 -  71996105 C

a score=901931.000000
s hg38.chr6_GL000254v2_alt  1376528 107 +   4827813 GTTGATATATCCTATGGTGGTGAAAATGGATTCAACCAAGCTGTTGGGCTATCTACTGAAGTCCTCTCCAAAGTGAAATTTATTCAAAAGAAGAAATTAGTAGG--GAT
s panTro5.chr6             30249913 107 + 175400573 GTTGATATATCCTATGGTGGTGAAAATGGATTCAACCAAGCTGTTGGGTTATCTACTGAAGTCCTCTCCAAAGTGAAATTTATTCAAAAGAAGAAATTAATAGG--GAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30480436 107 + 173848474 GTTGATATATCCTATGGTGGTGAAAATGGATTCAACCAAGCTGTTGGGTTATCTACTGAAGTCCTCTCCAAAGTGAAATTTATTCAAAAGAAGAAATTAATAGG--GAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     187064 107 +   2037526 GTTGATATATCCTATGGTGGTGAAAATGGATTCAACCAAGCTGTTGGGTTATCTACTGAAGTCCTCTCCAAAGTGAAATTTATTCAAAAGAAGAAATTAATAGG--GAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74859380 107 + 122973662 GTTGATATATCCTATGGTGGTGAAAATGGATTCAACCAAGCTGTTGAGTTATCTACTGAAGTCCTCTCCAAATTGAAATTTATTCAAAAGAAGAAATTAATAGG--GAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30730642 109 + 172585720 GTTGATATATCCTATAGTGGTGAAAATTGATTCAACCAAGCTGTTGAGTTATCTACTGAATTCCTCTCCAAAGTGAAATTTATTCAAAAGAAGAAATTAATAGGATGAT
i rheMac8.chr4             I 1644 C 0
s macFas5.chr4             30027168 109 - 170955103 GTTGATATATCCTATAGTGGTGAAAATTGATTCAACCAAGCTGTTGAGTTATCTACTGAATTCCTCTCCAAAGTGAAATTTATTCAAAAGAAGAAATTAATAGGATGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     262687 109 +   1495729 GTTGATATATCCTATAGTGGTGAAAATTGATTCAACCAAGCTGTTGAGTTATCTACTGAATTCCTCTCCAAAGTGAAATTTATTCAAAAGAAGAAATTAATAGGATGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     371664 109 -    863181 GTTGCTATATCCTATAGTGGTGAAAATTGATTCAACCAAGCTGTTGAGTTATCTACTGAATTCCTCTCCAAAGTGAAATTTATTCAAAAGAAGAAATTAATAGGATGAT
i cerAty1.NW_012002535v1   I 3 C 0
s chlSab2.chr17            29534049 109 -  71996105 GTTGATATATCCTATAGTGGTGAAAATTGATTCAACCAAGCTGTTGAGTTATCTACCGAATTCCTCTCCAAAGTGAAATTTATTCAAAAGAAGGAATTAATAGGATGAT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     171296 109 -   1829203 GTTGATATATCCTATAGTGGTGAAAATTGATTCAACCAAGCTGTTGAGTTATCTACCAAATTCTTCTCCAAAGTGAAATTTATTCAAAAGAAGAAATTAATAGGATGAT
i colAng1.NW_012115577v1   M 2922 C 0
s calJac3.chr4             30336731 109 + 171630274 GTTGATATATCATTTGGTGGTGAAAATTGATTCAACCAAGCTATGGAGTTATCAACTGAAGTCCTCTCCAACATGAAATTCATTCAAGAGAAGAAATTAATAGGACTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           158822 109 +    515838 GTTGATATATCATATGGTGGTGAAAATTGATTCAACCAAGCTATGGAGTTATCTTCTGAAGTCCTCTCCAACATGAAATTCATTCAAGAGAAGAAATTAATAGGACTAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     794786 109 -   1771730 GTTGATATATCATATGGTGGTGAAAATTGATTCAACCAAGCTATGGAGTTATCTTCTGAAGTCTTTTCCAACATGAAATTCATTCAAGAGAAGAAATTAATAGGACTAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     273983 109 -    383796 ATTGATATATCATTTGGTGGTGACAATTGATTCAACCAAGCTATGGAGTTATCTACTGAAGTCCTCTCCAACATGAAATTCATTCAAGAGAAGCAATTAATAGGACTAT
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I
e manLeu1.NW_012107142v1     196029 792 -    735854 I

a score=1668196.000000
s hg38.chr6_GL000254v2_alt  1376635 165 +   4827813 ACATTGATGAAATCAGCCAGGACACAGGCAGGTACTGTTTTGGTGTTGAAGATACACTAAAGGCTTTGGAAATGGGAGCTGTAGAAATTCTAATAGCCTATGAAAATCTGAATATAATGAGATATGTTCTTCATTGCCAAGGCACAAAAGAGGAGAAAATTC----TCT
s panTro5.chr6             30250020 165 + 175400573 ACATTGATTAAATCAGCCAGGACACAGGCAGGTACTGTTTTGGTGTTGAAGATACACTAAAGGCTTTGGAAATGGGAGCTGTAGAAATTCTAATAGCCTATGAAAATCTGAATATAATGAGATATGTTCTTCATTGCCAAGGCACAAAAGAGGAGAAAATTT----TCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30480543 165 + 173848474 ACATTGATGAAATCAGCCAGGACACAGGCAGGTACTGTTTTGGTGTTGAAGATACACTAAAGGCTTTGGAAATGGGAGCTGTAGAAATTCTAATAGCCTATGAAAATCTGAATATAATGAGATATGTTCTTCATTGCCAAGGCACAAAAGAGGAGAAAATTT----TCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     187171 165 +   2037526 ACATTGATGAAATCAGCCAGGACACAGGCAGGTACTGTTTTGGTGTTGAAGATACACTAAAGGCTTTGGAAATGGGAGCTGTAGAAATTCTAATAGCCTATGAAAATCTGAATAGAATGAGATATGTTCTTCACTGCCAAGGCACAAAAGAGGAGACAATTC----TCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74859487 169 + 122973662 ACATTGATGAAATCAGCCAGGACACAGGCAGGTACTGTTTTGGTGTTGAAGATACACTAAAGGCTTTGGAAATGGGAGCTGTAGAAATTCTAATAGCCTATGAAAATCTGAATATAATGAGATATGTTCTTCATTGCCAAGGCACAGAAGAGGAGAAAATTCTCTATCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30730751 169 + 172585720 ACATTGATGAAATCAGCCAGGACACAGGCAGGTACTGTTTTGGCGTTGAAGATACACTAAAGGCTTTGGAAATGGGAGCTGCAGAAATTTTAATAGCCTATGAAAATCTGAATATAATGGGATACGTTCTTCATTGCCAAGGCACAGAAGAGGAGAAAATTCTCTGTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30027277 169 - 170955103 ACATTGATGAAATCAGCCAGGACACAGGCAGGTACTGTTTTGGCGTTGAAGATACACTAAAGGCTTTGGAAATGGGAGCTGCAGAAATTTTAATAGCCTATGAAAATCTGAATATAATGGGATACGTTCTTCATTGCCAAGGCACAGAAGAGGAGAAAATTCTCTGTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     262796 169 +   1495729 ACATTGATGAAATCAGCCAGGACACAGGCAGGTACTGTTTTGGCGTTGAAGATACACTAAAGGCTTTGGAAATGGGAGCTGCAGAAATTTTAATAGCCTATGAAAATCTGAATATAATGGGATACGTTCTTCATTGCCAAGGCACAGAAGAGGAGAAAATTCTCTGTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     371773 169 -    863181 ACATTGATGAAATCAGCCAGGACACAGGCAGGTACTGTTTTGGCGTTGAAGATACACTAAAGGCTTTGGAAATGGGAGCTGCAGAAATTTTAATAGCCTATGAAAATCTGAATATAATGGGATATGTTCTTCATTGCCAAGGCACAGAAGAGGAGAAAATTCTCTGTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29534158 169 -  71996105 ACATTGATGAAATCAGCCAGGACACAGGCAGGTACTGTTTTGGCGTTAAAGATACACTAAAGGCTTTGGAAATGGGAGCTGTAGAAATTTTAATAGCCTATGAAAATCTGAATATAATGGGATATGTTCTTCATTGCCAAGGCACAGAAGAGGAGAAAATTCTCTATCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     196821 169 -    735854 ACATTGATGAAATCAGCCAGGACACAGGCAGGTACTGTTTTGGCGTTGAAGATACACTAAAGGCTTTGGAAATGGGAGCTGCAGAAATTTTAATAGCCTATGAAAATCTGAATATAATGGGATACGTTCTTCATTGCCAAGGCACAGAAGAGGAGAAAATTCTCTGTCT
i manLeu1.NW_012107142v1   I 792 C 0
s colAng1.NW_012115577v1     171405 169 -   1829203 ACACTGATGAAATCAGCCAGGACACAGGCAGGTACTGTTTTGGCATTGAAGATACACTAAAGGCTTTGGAAATGGGAGCTGCAGAAATTTTAATAGCCTATGAAAATCTGAATATAATGGGATATGTTCTTCATTGCCAAGGCACAGAAGAGGAGAAAATTCTGTATCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30336840 163 + 171630274 ACTTTGATGAAATCAGCCAGGACACAGGCAAGTACTGTTTGGGTGCTGAAAATACACTAAAGGCTTTGG-AATGGGAGCTGTAGAAATTCTAATAGTATATGAAAATCTGGATATAATGAGATATGTTCTTCATTG-CAAGGCACAGAAGAGAAGAAAATTC----TCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           158931 164 +    515838 ACTTTGATGAAATCAGCCAGGACACGGGCAAGTACTGTTTGGGCACTGAAAATACACTAAAGGCTTTGG-AATGGGAGCTGTAGAAATTCTAATAGTCTACGAAAATCTGGATATAATAAGATATGTTCTTCATTGCCAAGGCACAGAAGAGGAGAAAATTC----TCT
i saiBol1.JH378341         C 0 I 204
s cebCap1.NW_016107755v1     794895 164 -   1771730 ACTTTGATGAAATCAGCCAGGACACGGGCACGTACTGTTTTGGTACTGAAAATACACTAAAGGCTTTGG-AATGGGGGCTGTAGAAATTCTAATAGTCTATGAAAATCTGGATATAATAAGATATGTTCTTCATTGCCAAGGCACAGAAGAGGAGAAAATTC----TCT
i cebCap1.NW_016107755v1   C 0 I 4
s aotNan1.NW_018496904v1     274092 164 -    383796 ACTTTGATGAAATCAGCCAGGACACGGGCAAGTACTGTTTGGGCACTGAAAATACACTAAAGGCTTTGG-AATGGGAGCTGTAGAAATTCTAATATTCTATGAAAATCTGGATATAATAAGATATGTTCTTCATTGCCAAGGCGCAGAAGAGGAGAAAATTC----TCT
i aotNan1.NW_018496904v1   C 0 I 4
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I

a score=19110.000000
s hg38.chr6_GL000254v2_alt  1376800 2 +   4827813 AA
s panTro5.chr6             30250185 2 + 175400573 AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30480708 2 + 173848474 AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     187336 2 +   2037526 AA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74859656 2 + 122973662 AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30730920 2 + 172585720 AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30027446 2 - 170955103 AA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     262965 2 +   1495729 AA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     371942 2 -    863181 AA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29534327 2 -  71996105 AA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     196990 2 -    735854 AA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     171574 2 -   1829203 AA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30337003 2 + 171630274 AA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     795063 2 -   1771730 AA
i cebCap1.NW_016107755v1   I 4 C 0
s aotNan1.NW_018496904v1     274260 2 -    383796 AA
i aotNan1.NW_018496904v1   I 4 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           159095 204 +    515838 I
e otoGar3.GL873550           213464 5 +  18854210 I

a score=6942017.000000
s hg38.chr6_GL000254v2_alt  1376802 704 +   4827813 CTCCAGAGCAAGAACAGGATAAATCTCATTTCACAGACAAAGAGACCAGGCAGGAACATGCGCTTATCAAGAGCATGCCCCTGTTGAAATGGTTTGCTAACAACTATAAAAAAGTCGGAGCTACATTGGAAATTGTCACATATAAATCACAAGAAGGGTCTC-AGTTTGTGAAAGGATTTGGTAGAATTGGAGGTCTCTTGTGGTACCAAGTGGATTTCCAAAGAATGGAATACCAAGGAGGAGACGATGAATTTTTTTACCTTGATGACTACTAGGTAGTCGACATGGGTCCGGCAAAAC-ATGCCTCACTCTCCAGCATCCAACCCAAGGAGCATACTCATGATGGAATCCAAACAGATCCCTGCCTTACAATTGGAACATTTCCAGAACTTAATCCATGAGCACTGGATATTGAAAAGAAAACAGAAACAAAACCAGACCCAACCCTACACTTTGGTTTGTCACGGTGTCAGCGTAGCAGCCTACAACTAAGTTCCTAAATGCCACTTTGGACTAATTTAAAAAAGAATCCCAGTTTTTACTTTTACTCGATGGTGAAATTGGCTGCTCTTGTATTTTATT--TAAAAAATGA-TTTTTTTAACCTTTATACAAATAAGCAAAAATACTTTAACTGCTGTAAACCTTCAAAAGTTAATAGAAGTGAGATCGTACTG----CTTTCTTATTTTGATTGGAGAGAAATTAAA
s panTro5.chr6             30250187 704 + 175400573 CTCCAGAGCAAGAAAAGGATAAATCTCATTTCACAGACAAAGAGACCAGGCAGGAACATGCGCTTATCAAGAGCATGCCCCTGTTGAAATGGTTTGCTAACAACTATAAAAAAGTCACAGCTACATTGGAAATTGTCACATATAAATCACAAGAAGGGTCTC-AGTTTGTGAAAGGATTTGGTAGAATTGGAGGTCTCTTGCGGTACCAAGTGGATTTCCAAAGAATGGAATACCAAGGAGGAGACGATGAATTTTTTTACCTTGATGACTACTAGGTAGTCGACATGGGTCCGGCAAAAC-ATGCCTCACTCTCCAGCATCCAACCCAAGGAGCATACTCATGATGGAATCCAAACAGATCCCTGCCTTACAATTGGAACATTTCCAGAACTTAATCCATGAGCACTGGATATTGAAAAGAAAACAGAAACAAAACCAGACTCAACCCTACACTTTGGTTTGTCATGGTGTCAGCGTAGCAGCCTACAACTAAGTTCCTAAATGCCACTTTGGACTAATTTAAAAAAGAATCCCAGTTTTTACTTTTACTCGATGGTGAAATTGGCTGCTCTTGTATTTTATT--TAAAAAATGA-TTTTTTTAACCTTTATACAAATAAGCAAAAATACTTTAACTGCTGTAAACCTTCAAAAGTTAATAGAAGTGAGATCATACTG----GTTTCTTATTTTGATTGGAGAGAAATTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30480710 704 + 173848474 CTCCAGAGCAAGAAAAGGATAAATCTCATTTCACAGACAAAGAGACCAGGCAGGAACATGCGCTTATCAAGAGCATGCCCCTGTTGAAATGGTTTGCTAACAACTATAAAAAAGTCACAGCTACATTGGAAATTGTCACATATAAATCACAAGAAGGGTCTC-AGTTTGTGAAAGGATTTGGTAGAATTGGAGGTCTCTTGCAGTACCAAGTGGATTTCCAAAGAATGGAATACCAAGGAGGAGACAATGAATTTTTTTACCTTGATGACTACTAGGTAGTCGACATGGGTCCGGCAAAAC-ATGCCTCACTCTCCAGCATCCAACCCAAGGAGCATACTCATGATGGAATCCAAACAGATCCCTGCCTTACAATTGGAACATTTCCAGAACTTAATCCATGAGCACTGGATATTGAAAAGAAAACAGAAACAAAACCAGACTCAACCCTACACTTTGGTTTGTCATGGTGTCAGCGTAGCAGCCTACAACTAAGTTCCTAAATGCCACTTTGGACTAATTTAAAAAAGAATCCCAGTTTTTACTTTTACTCGATGGTGAAATTGGCTGCTCTTGTATTTTATT--TAAAAAATGA-TTTTTTTAACCTTTATACAAATAAGCAAAAATACTTTAACTGCTGTAAACCTTCAAAAGTTAATAGAAGTGAGATCATACTG----GTTTCTTATTTTGATTGGAGAGAAATTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     187338 704 +   2037526 CTCCAGAGCAAGAAAAGGATAAATCTCATTTCACAGACAAAGAGACCAGGCAGGAACATGCGCTTATCAAGAGCATGCCCCTGTTGAAATGGTTTGCTAACAACTATAAAAAAGTCGGAGCTACATTGGAAATTGTCACATATAAATCACAAGAAGGGTCTC-AGTTTGTGAAAGGATTTGGTAGAACTGGAGGTCTCTTGCGGTACCAAGTGGATTTCCAAAGAATGGAATACCAAGGAGGAGACGATGAATTTTTTTACCTTGATGACTACTAGGTAGTCGACATGGGTCCGGCAAAAC-ATGCCTCACTCTCCAGCATCCAACCCAAGGAGCATACTCATGATGGAATCCAAACAGATCCCTGCCTTATAATTGGAACATTTCCAGAACTTAATCCATGAGCACTGGATATTGAAAAGAAAACAGAAACAAAACCAGACCCAACCCTACACTTTGGTTTGTCATGGTGTCAGCGTAGCGGCCTACAACTAAGCTCCTAAATGCCACTTTGGACTAATTTAAAAAAGAATCCCAGTTTTTACTTTTACTTGATGGTGAAATTGGCTGCTCTTGTATTTTATT--TAAAAAATGA-TTTTTTTAACCTTTATACAAATAAGCAAAAATACTTTAACTGCTGTAAACCTTCAAAAGTTAATAGAAGTAAGATCATACTG----GTTTCTTATTTTGATTGGAGAGAAACTAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74859658 703 + 122973662 CTCCAGAGCAAGAAAAGGATAAATCTCATTTCACAGACAAAGAGACCAGACAGGAACATGAGCTTATCGAGAGCATGCCCCTGTTGGAATGGTTTGCTAACAACTATAAAAAAGTTGGAGCTACATTGGAAATTGTCACATATAAATCACAAGAAGGGTTTC-AGTTTGTGAAAGGATTTGGTAGAATTGGAGGTCTCTTACGGTACCAAGTGGATTTCCAAAGAATAGAATACCAAGGAGGAGACGATGAATTTTTTTACCTTGATGACTACTAGGTAGTCGACATGGGTCCAGCAAAAC-ATGCCTCACCCTCCAGCATCTAACCCAAAGAGCATACTCATGGTGGAATCCAAACAGATCCCTGCCTTACAATTGGAATATTTCCAGAACGTAATCCATGAGCACTGGGTATTGAAAAGAAAACAGAAACAAAACCAGACCCAACCCTACACTTTGGTTTGTCATGGTGTCAGCATAGCAGCCTACAACTAAGTTCCTGAATGCCACTTTGGACTAATGTAAAAAAGAAT-CCAGTTTTTACTTTTACTCAATGGTGAAATTGGCTGCTCTTGTATTTTATT--TAAAAAATGA-TTTTTTAAACCTTTATACAAATAAGCAAAAATACTTTAACTGCTGTAAACCTTCAAAAGTTAATAGAAGTGAGATCATACTG----GTTTCTTATTTTGATTGGAGAGAAATTAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30730922 705 + 172585720 CTCCAGAGCAAGAAAAGGATAAATCTCATTTCACAGACAAAGAGACCGGACGGGAACATGAGCTTATCAAGAGCATGCCCCTGTTGGAATGGTTTGCTAACAACTATAAAAAAGTTGGAGTTACGTTGGAAATTGTCACATATAAATCACAAGAAGAGTCTC-AGTTTGTGAAAGGATTTGGTGGAATTGGAGGTTTCTTGCGGTACCAAGTAGATTTCCAAAGAATGGAATACCAAGAAGGAGACGATGAAGTTTTTTACCTTGATGACTACTAAGTAGTCGACATGGGTCCGGCAAAACAGTGCCTCTCTCTCCAGCATCCAACCCAAGAAGCATACTCATGGTGGAATCCAAACAGATCCTTGCCTTACAACTGGAACATTTCCAGAACTTAATCCATGAGCACTGGATATTGAAAAGAAAACTGAAACAAAACCAGACCCAGCCCTACACTTTGGTTTGTGATGGTGTCAGCCCAGCAGCCTACCACTAAATTCCTAAATGCCACTTTGGACTAATTTTAAAAAGAATCCCAGTTTTTACTTTTACTCAATGGTGAAATTGGCTGCTCTTGTATTTTATT--TAAAAAATGA-TTTTTTTAACCTTTATACAAAGAAGCAAAAATACTTTAACTGCTGTAAACCTTCAAAAGTTAATAGAAGTGAGATCATACTG----GTTTCTTATTTTGATTGGAGAGAAATTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30027448 705 - 170955103 CTCCAGAGCAAGAAAAGGATAAATCTCATTTCACAGACAAAGAGACCGGACGGGAACATGAGCTTATCAAGAGCATGCCCCTGTTGGAATGGTTTGCTAACAACTATAAAAAAGTTGGAGTTACGTTGGAAATTGTCACATATAAATCACAAGAAGAGTCTC-AGTTTGTGAAAGGATTTGGTGGAATTGGAGGTTTCTTGCGGTACCAAGTAGATTTCCAAAGAATGGAATACCAAGAAGGAGACGATGAAGTTTTTTACCTTGATGACTACTAAGTAGTCGACATGGGTCCGGCAAAACAGTGCCTCACTCTCCAGCATCCAACCCAAGAAGCATACTCGTGGTGGAATCCAAACAGATCCCTGCCTTACAACTGGAACATTTCCAGAACTTAATCCATGAGCACTGGATATTGAAAAGAAAACCGAAACAAAACCAGACCCAGCCCTACACTTTGGTTTGTGATGGTGTCAGCACAGCAGCCTACAACTAAATTCCTAAATGCCACTTTGGACTAATTTTAAAAAGAATCCCAGTTTTTACTTTTACTCAATGGTGAAATTGGCTGCTCTTGTATTTTATT--TAAAAAATGA-TTTTTTTAACCCTTATATAAAGAAGCAAACATACTTTAACTGCTGTAAACCTTCAAAAGTTAATAGAAGTGAGATCATACTG----GTTTCTTATTTTGATTGGAGAGAAATTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     262967 705 +   1495729 CTCCAGAGCAAGAAAAGGATAAATCTCATTTCACAGACAAAGAGACCGGACGGGAACATGAGCTTATCAAGAGCATGCCCCTGTTGGAATGGTTTGCTAACAACTATAAAAAAGTTGGAGTTACGTTGGAAATTGTCACATATAAATCACAAGAAGAGTCTC-AGTTTGTGAAAGGATTTGGTGGAATTGGAGGTTTCTTGCGGTACCAAGTAGATTTCCAAAGAATGGAATACCAAGAAGGAGACGATGAAGTTTTTTACCTTGATGACTACTAAGTCGTCGACATGGGTCCGGCAAAACAGTGCCTCACTCTCCAGCATCCAACCCAAGAAGCATACTCATGGTGGAATCCAAACAGATCCCTGCCTTACAACTGGAACATTTCCAGAACTTAATCCATGAGCACTGGATATTGAAAAGAAAACTGAAACAAAACCAGACCCAGCCCTACACTTTGGTTTGTGATGGTGTCAGCCCAGCAGCCTACCACTAAATTCCTAAATGCCACTTTGGACTAATTTTAAAAAGAATCCCAGTTTTTACTTTTACTCAATGGTGAAATTGGCTGCTCTTGTATTTTATT--TAAAAAATGA-TTTTTTTAACCTTTATACAAAGAAGCAAAAATACTTTAACTGCTGTAAACCTTCAAAAGTTAATAGAAGTGAGATCATACTG----GTTTCTTATTTTGATTGGAGAGAAATTAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     371944 705 -    863181 CTCCAGAGCAAGAAAAGGATAAATCTCATTTCACAGACAAAGAGACCGGACGGAAACATGAGCTTATCGAGAGCATGCCCCTGTTGGAATGGCTTGCTAACAACTATAAAAAAGTTGGAGTTACGTTGGAAATTGTCACATATAAATCACAAGAAGAGTCTC-AGTTTGTGAAAGGATTTGGTGGAATTGGAGGTTTCTTGCGGTACCAAGTAGATTTCCAAAGAATAGAATACCAAGAAGGAGACGATGAAGTTTTTTACCTTGATGACTACTAAGTAGTCGACGTGGGTCCGGCAAAACAGTGCCTCACTCTCCAGCATCCAACCCAAGAAGCATACTCATGGTGGAATCCAAACAGATCCCTGCCTTACAACTGGAACATTTCCAGAACTTAATCCATGAGCACTGGATATTGAATAGAAAATCGAAACAAAACCAGACCCAGCCCTACACTTTGGTTTGTGATGGTGTCAGCGCAGCAGCCTACAACTAAATTCCTAAATGCCACTTTGGACTAATTTTAAAAAGAATCCCAGTTTTTACTTTTACTCAATGGTGAAATTGGCTGCTCTTGTATTTTATT--TAAAAAATGA-TTTTTTTAACCTTTATATAAAGAAGCAAACATACTTTAACTGCTGTAAACCTTCAAAAGTTAATAGAAGTGAGATCATACTG----GTTTCTTATTTTGATTGGAGAGAAATTAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29534329 703 -  71996105 CTCCAGAGCAAGAAAAGGATAAATCTCATTTCACAGACAAAGAGACCAGATGGGAACATGAGCTTATCGAGAGCATGCCCCTGTTGGAATGGTTTGCTAACAACTAT-AAAAAGTTGGAGTTACGTTGGAAATTGTCATATATAAATCACAAGAAGGGTCTC-AGTTTGTGAAAGGATTTGGTGGAATTGGAGGTCTCTTGCGGTACCAAGTAGATTTCCAAAGAATGGAATACCAAGAAGGAGACGGTGAAGTTTTTTACCTTGATGACTACAAAGTAGTTGACATGGGTCCGGCAAAAC-GTGCCTCACTCTCCAGCATCCAACCCAAGGAGCATACTCATGGTGGAATCCCAACAGATCCCTGCCTTACAACTGGAACATTTCCAGAACTTAATCCATGAGCACTGGATATTGAAAAGAAAACCGAAACAAAACCAGACCCAGCCCTACACTTTGGTTTGTGATGGTGTCAGCGCAGCAGCCTACAACTAAATTCCTAAATGCCACTTTGGACTAATCTTAAAAAGAATCCTAGTTTTTACTTTTACTCAATGGTGAAATTGGCTGCTCTTGTATTTTATT--TTAAAAATGA-TTTTTTTAACCTTTATACAAAGAAGCAAAAATACTTTAACTGCTGTAAACCTTCAAAAGTTAATAGAAGTGAGATCATACTG----GCGTCTTATTTTGATTGGAGAGAAATTAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     196992 705 -    735854 CTCCAGAGCAAGAAAAGGATAAATCTCATTTCACAGACAAAGAGACCGGACGGGAACATGAGCTTATCGAGAGCATGCCCCTGTTGGAATGGTTTGCTAACAACTATAAAAAAGTTGGAGTTACGTTGGAAATTGTCACATATAAATCACAAGAAGAGTCTC-AGTTTGTGAAAGGATTTGGTGGAATTGGAGGTTTCTTGCGGTACCAAGTAGATTTCCAAAGAATGGAATACCAAGAAGGAGGCGATGAAGTTTTTTACCTTGATGACTACTAAGTAGTTGACATGGGTCCGGCAAAACAGTGCCTCACTCTCCAGCATCCAACCCAAGAAGCATACTCATGGTGGAATCCAAACAGATCCTTGCCTTACAACTGGAACATTTCCAGAACTTAATCCATGAGCACTGGATATTGAAAAGAAAACTGAAACAAAACCAGACCCAGCCCTACACTTTGGTTTGTGATGGTGTCAGCCCAGCAGCCTACCACTAAATTCCTAAATGCCACTTTGGACTAATTTTAAAAAGAATCCCAGTTTTTACTTTTACTCAATGGTGAAATTGGCTGCTCTTGTATTTTATT--TAAAAAATGA-TTTTTTTAACCTTTATACAAAGAAGCAAAAATACTTTAACTGCTGTAAACCTTCAAAAGTTAATAGAAGTGAGATCATACTG----GTTTCTTATTTTGATTGGAGAGAAATTAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     171576 701 -   1829203 CTCCAGAGCAAGAAAAGGATAAATCTCATTTC----ACAAAGAGACCGGACGGGAACATGAGCTTATCGAGAGCATGCCCCTGTTGGAATGGTTTGCTAACAACTATAAAAAGGTTGGAGTTACTTTGGAATTTGTCACATATAAATAACAAGAAGGGTCTC-AGTTTGTGAAAGGATTTGGTGGAATTGGGGGTCTCTTGCGGTACCAAGTAGATTTCCAAAGAATGGAATACCAAGAAGGAGACGATGAAGTTTTTTACCTTGATGACTACAAAGTAGTCGACATGGGTCCAGCAAAAC-GTGCCTCACTCTCCAGCATCCAACCCAAGGAGCATACTCATGGTGGAATCCAAACAGATCCCTGCCTTACAATTGGAACATTTCCAGAACTTAATCCATGAGCACTTGATATTGAAAAGAAAACCGAAACAAAACCAGACCCAGCCCTACACTTTGGTTTGTGATGGTGTCAGCACAGCAGCCTACAACTAAATTCCTAAATGCCACTTTGGACTAATTTTAAAAAGAATCTCAGTTTTTACTTTTACTCAATGGTGAAATTGGCTGCTCTTGTATTTTATT--TTAAAAATGATTTTTTTTAACCTTTATACAAAGAAGCAAAAATACTTTAACTGCTGTAAACCTTCAGAAGTTAATAGAAGTGAGATCATACTG----GTTTCTTATTTTGATTGGAGAGAAATTAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30337005 707 + 171630274 GTCCAGAGCAAGAAAAGGATAAATGTCATTTTGCAGACAAAGAGACCAGACAGGAACATGAGCTTATCAAGAGCATGCCCCTGTTGGAATGGTTTCCTAACAACTATAAAAAATTTGGAGCTAGGTTGGAAATTGTCACAGATAAATCACAAGAAGGGTCTC-AGTTTGTAAAAGGATTTGGTGGAATTGGAGGTATCTTGTGGTATTGGGTAGATTTCCAGGGAATGGAATACCAAGGAAGAGATCATGAATTTTTTGACCTTGATGACTACTAGGTAGTCGACATGGGTTCAGCAAAAT-GGGCCTGACTCTCCAGCATCTAACCCAAGGAGCATGCCCATGGTGAAATCCAAACAGATCCCTGCCTTACAATTGGAACATTTCCAGAACTTAATCCATGAGGATTGAATATTGAAAAGAAAACCGAAGCAAAACCAGACCCAACCCTACACTTTGCTTTGTCATGGTGTCGGCACAGCAGCCTACAACTAAGTTCCTAAATGCCACTTTGGGCTAATTTAAAAAAGAATCCCAGTTTTTACTTGTACTCGATGGTGAAATTGGTTGCTCTTGTA-TTTACA--AAAAAAATGA-TTTTTTTAACCTTCATACATAGAAGCAAAAATACGTTGACTGCTGTAAACCTTCAAAAGTTAATAGAAGTGAAATCGTACTGGTTTGTTTCTTATTTTGGTTGGAGAAAAATTAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           159299 701 +    515838 CTCCAGAGCAAGAAAAGAATAAATGTCCTTTCACAGACAAAGAGATCAGACAGGAACATGAGCTTATTGAGAGCATGCCCCTATTGGAATGGTTTCCTAACAACTATAAAAAACTTGGAGCTATGTTGGAAATTGTCACAGATAAATCACAAGAAGTGTCTCAAGTTTGTAACAGGATTTGACGGAATTGG-GGTATCTTGCGGTGCCGAGTAGATTACCAGGGAATGGAATACCAAGGAAGAGATGATGAATTTTTTGACCTTGATGACTACTAGGTAGTTGACATGGGTTCAGCAAAAC-GGGCCTGAGTCTCCAGCATCCAACCCAAGGAGCATACCCATGGTGGAATCCAAACAGATCCCTGTCTTACAATTGGAACATTTCCAGAACTTAATCCATGAGGATTGGATATTGAAAAGAAAAGCGAAGCAAAACCAGACCCAACCCTACACTGTGCTTTGTCATGGTGTTGGCACAGCAGCCTAC-----AGTTTCTAAATGCCACTTTGGGCTAATTTTTAAAAGAATCCCAGTTTTTACTTGTACTCGATGGTGAAATTGGTTGCTCTTGTA-TTTGTG--AAAAAAATGA--TTGTTTAACCTTCATACATAGAAGCAAAAACACCTTAACTGCTGTAAACCTTCAAAAGTTAATAGAAGTGAAATCATACTGCTTTGTTTCTTATTTTGGTTGGAGAAAAATTAAA
i saiBol1.JH378341         I 204 C 0
s cebCap1.NW_016107755v1     795065 708 -   1771730 CTCCAGAGCAAGAAAAGGATAAATGTGCTTTCACAGACAAAGAGACCAGAGAGGAACATGAGCTTATCGAGAGCATGCCCCTGTTGGAATGGTTCCCTAACAACTATAAAAAATTTGGAGCTACTTTGGAAATTGTCACAGATAAATCACAAGAAGGGTCTC-AGTTTGTAACAGGATTTGATGTAATTGGAGGTATCTTGCGGTGCCGAGTAGATTTTGAGGTAATGGAATACCAAGGAAGAGATGATGAATTTTTTGACCTTGATGACTACTAGGTAGTCAACATGGGTTCAGCAAAAT-GGGCCTGACTCGCCAGCATCCAACCCAAGGAGCATACCCATGGTGGAATCCAAACAGATCCCCGCCTTACAATTGGAACATTTCCAGAACTTAATCCATGAGGATTGGATATTGAAAAGAAAACCAAAGCAAAACCAGACCCAACCCTACACTTTGCTTTGTCATGGTGTCAGCACAGCAGCCTACAACTAAGTTCCTAAATGCCACTTTGGGCTAAATTTTAAAAGAATCCCAGTTTTTACTTGTACTCAATGGTGAAATTGGTTACTCTTGTA-TTTATGGAAAAAAAATGA--TTTTTTAAACTTCACACGTAGAAGCAAAAATACCTTAACTGCTGTAAGCCTTCAGAAGTTAATAAAAGTGAAATCATACTGCTTTGTTTCTTATTTTGGTTGGAGAAAAATTAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     274262 703 -    383796 CTCCAGAGCAAGAAAAGGCTAAATGTCCTTTCACAGACAAAGAGACCAGACAGGAACATGAGCTCATCAAGAGCATGCCCCTGTTGGAATGGTTTCCTAACAACTATAAAAAATTTGGAGCTATGTTGGAAATTGTCACAGATAAATCACAAGAAAGGTCTC-AGTTTGTAAAAGGATTTGGTGGAATTGGAGGTATCTTGTGGTGCCGAGTAGAATTCCAGGGAATGGAATACCAAGGAGGAGATGATGAATTTTTTGACCTTGATGACTGCTAGGTAATCGACATGGGTTCAGCAAAAT-GGGCCTGACTCTCCAGCATCCAACCCAAGGAGCATACCCATGGTGGAATCCAAACAGATCCCTGCCTTACAATTGGAACATTTTGAGAACTTAATCCATGAGGATTGGATATTGAAAACAAAACAGAAGCAAAACCAGACCCAACCCTACACTTTGCTTTGTCATGGTGTCGGCACAGCAGCCTACAACTAAGTTCCTAAATGCCACTTTGGGCTAATTTAAAAAAGAATCCCAGTTTTTACTTGTACTCGATGGTGAAATTGGTTGCTCTTGTA-TTTATG--AAAAAAATGA--TTTTTTAAC---CATACATAGAAGCAAAAATACCTTAACTGCTGTAAACCTTCAAAAGTTAATAGAAGTGAAATCATATTGGTTTGTTTCTTATTTTGGTTGGAGAAAAATTAAA
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I

a score=3274406.000000
s hg38.chr6_GL000254v2_alt  1377506 440 +   4827813 TTGCTACATTTTGCAGTGACCCATTTACATGGCATTCTCAGCTTAGACTGCATAAGAAGAAATATATGTGGTGAAATGTTGGAACCATTTCTCTCTTGGTCTCTGTTTAATGATGAAAGAGTGAGCTAATAGGAGGCAATTTCAACTTCACTCCCTCACGCTACCCCTTCCCCCTCCAGACTGGCCGTTTCAAGGATGAAAATTGCATTGC-AAAATCAAACTGACTCATGAAGCATTTGGGCCAGTGCACTGTTTACTTCCATCTGTTTGCAGACACATTTGTGCCCGGTGTTTGGGAGCTCTTTGTATCAATGTTCCGACAAGGGTCCCAATAACCTTAACCTACTCGAAACCAGTTTGGGATGGATATGATGGGGCTTCTGTGCTATTGCTGGGATTGGGAGAAATAAAACATGCAATTTAAGTGGAAGCAAAACAA-T
s panTro5.chr6             30250891 440 + 175400573 TTGCTACATTTTGCAGTGACCCATTTACATGGCATTCTCAGCTTAGACTGCATAAGAAGAAATATATGTGGTGAAATGTTGGAACCATTTCTCTCTTGGTCTCTGTTTAATGATGAAAGAGTGAGCTAATAGGAGGCAATTTCAACTTCACTCCCTCACGCTACCCCTTCCCCCTCCAGACTGGCCGTTTCAAGGATGAAAATTGCATTGC-AAAATCAAACTGACTCATGAAGCATTTGGGCCAGTGCACTGTTTACTTCCATCTGTTTGCAGACACATTTGTGCCCGGTGTTTGGGAGCTCTTTGTATCAATGTTCCGACAAGGGTCCCAATAACCTTAACCTACTTGAAACCAGTTTGGGATGGATATGATGGGGCTTCTGTGCTATTGCTGGGATTGGGAGAAATAAAACATGCAATTTAAGTGGAAGCAAAACAA-T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30481414 440 + 173848474 TTGCTACATTTTGCAGTGACCCATTTACATGGCATTCTCAGCTTAGACTGCATAAGAAGAAATATATGTGGTGAAATGTTGGAACCATTTCTCTCTTGGTCTCTGTTTAATGATGAAAGAGTGAGCTAATAGGAGGCAATTTCAACTTCACTCCCTCACGCTACCCCTTCCCCCTCCAGACTGGCCGTTTCAAGGATGAAAATTGCATTGC-AAAATCAAACTGACTCATGAAGCATTTGGGCCAGTGCACTGTTTACTTCCATCTGTTTGCAGACACATTTGTGCCCGGTGTTTGGGAGCTCTTTGTATCAATGTTCCGACAAGGGTCCCAATAACCTTAACCTACTCGAAACCAGTTTGGGATGGATATGATGGGGCTTCTGTGCTATTGCTGGGATTGGGAGAAATAAAACATGCAATTTAAGTGGAAGCAAAACAA-T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     188042 439 +   2037526 TTGCTACATTTTGCAGTGACCCATTTACATGGCATTCTCAGCTTAGACTGCATAAGAAGAAATATATGTGGTGAAATGTTGGAACCATTTCTCTCTTGGTCTCTGTTTAATGATGAAAGAGTGAGCTAATAGGAGGCAATTTCAACTTCACTCCCTCACGCTACCCCTT-CCCCTCCAGACTGGCCGTTTCAAGGATGAAAATTGCATTGC-AAAATCAAACTGACTCATGAAGCATTTGAGCCAGTGCACTGGTTACTTCCATCTGTTTGCAGACAAATTTGTGCCCGGTGTTTGGGAGCTCTTTGTATCAATGTTCCGACAAGGGTCCCAATAACCTTAACCTACTCGAAACCAGTTTGGGATGGATATGATGGGGCTTCTGTGCTATTGCTGGGATTGGGAGAAATAAAACATGCAATTTAAGTGGAAGCAAAACAA-T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74860361 440 + 122973662 TTGCTACATTTTGCAGTGACCCATTTACATGGCATTCTCAGCTTAGACTGCATAAGAAGAAATATATGTGGTGAAATGTTAGAACCATTTCTCTCTTGGTCTCTGTTTAATGATGAAAGGGTGAGCTAATAGGAGGCAATTTCAACTTCACTCCCTCACACCACCCCTTCCCCCTCCAGACTGGCCGTTTCAAGGATGCAAATTGCATTGC-AAAATCAAACTGACTCATGAAGCATTTGGGCCAGTGCACTGTTTACTTCCATCTGTTTGCAGACACAGTTGTGCCCGGTGTTTGGGAGCTCTTCGTATCAATGTTCCGACAAGGGTCCCTATAACCTTAACCTACCCGAAACCAGTTTGGCATAGACATGATGGGGCTTCTGTGCTATTGCTGGGATTGGGAGAAATAAAACATGCAATTTAAGTGGAAGCAAAAAAA-T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30731627 440 + 172585720 TTGCTGCATTTCGCAGTGACCCATTTACATGGCATTCTCAGCTTAGACTGCATGAGAAGAAATATATGTGGTGAAATGTTGGAACCATTTCTCTCTTGGTCTCTGTTTAATGTTGAAAGGGTGAGCTAATAGGAGGCAATTTCAACTTCACTCCCTCACGCTACCCCTTCCCCCTCCAGGCTGGCCATTTCAAGGATGCAAATTGCATTGC-AAAATCAAACTGAATCATGAAGCATTTGGGCCAGTGCACTGTTTACTTCCATCTGTTTGCAGACACATTTGTGCCTGGTGTTTGGGAGCTCTTTGTATCAATGTTCTGAAAAGGGTCCCTATAACCTTAACCTACTCGAAACCAGTTTGGGATGGATATGATGGGGCTTCTGTGCTATTGCTGGGATTGGGAGAAATAAAACATGCAATTTAAGTGGAAGTGAAAAAA-T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30028153 440 - 170955103 TTGCTGCATTTCGCAGTGACCCATTTACATGGCATTCTCAGCTTAGACTGCATGAGAAGAAATATATGTGGTGAAATGTTGGAACCATTTCTCTTTTGGTCTCTGTTTAATGTTGAAAGGGTGAGCTAATAGGAGGCAATTTCAACTTCACTCCCTCACGCTACCCCTTCCCCCTCCAGACTGGCCATTTCAAGGATGCAAATTGCATTGC-AAAATCAAACTGAATCATGAAGCATTTGGGCCAGTGCACTGTTTACTTCCATCTGTTTGCAGACACATTTGTGCCTGGTGTTTGGGAGCTCTTTGTATCAATGTTCTGAAAAGGGTCCCTATAACCTTAACCTACTCGAAACCAGTTTGGGATAGATATGATGGGCCTTCTGTGCTATTGGTGGGATTGGGAGAAATAAAACATGCAATTCAAGTGGAAGCAAAAAAA-T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     263672 440 +   1495729 TTGCTGCATTTCGCAGTGACCCATTTACATGGCATTCTCAGCTTAGACTGCATGAGAAGAAATATATGTGGTGAAATGTTGGAACCATTTCTCTCTTGGTCTCTGTTTAATGTTGAAAGGGTGAGCTAATAGGAGGCAATTTCAACTTCACTCCCTCATGCTACCCCTTCCCCCTCCAGGCTGGCCATTTCAAGGATGCAAATTGCATTGC-AAAATCAAACTGAATCATGAAGCATTTGGGCCAGTGCACTGTTTACTTCCATCTGTTTGCAGACACATTTGTGCCTGGTGTTTGGGAGCTCTTTGTATCAATGTTCTGAAAAGGGTCCCTATAACCTTAACCTACTTGAAACCAGTTTGGGATGGATATGATGGGGCTTCTGTGCTATTGCTGGGATTGGGAGAAATAAAACATGCAATTTAAGTGGAAGTGAAAAAA-T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     372649 440 -    863181 TTGCTGCATTTCGCAGTGACCCATTTACATGGCATTCTCAGCTTAGACTGCATGAGAAGAAATATATGTGGTGAAATGTTGGAACCATTTCTCTTTTGGTCTCTGTTTAATGTTGAAAGGGTGAGCTAATAGGAGGCAATTTCAACTTCACTCCCTCACGCTACCCCTTCCCCCTCCAGACTGGCCATTTCAAGGATGCAAATTGCATTGC-AAAATCAAACTGAATCATGAAGCATTTGGGCCAGTGCACTGTTTACTTCCATCTGTTTGCAGACACATTTGTGCCTGGTGTTTGGGAGCTCTTTGTATCAATGTTCTGAAAAGGGTCCCTATAACCTTAACCTACTCGAAACCAGTTTGGGATAGATATGATGGGCCTTCTGTGCTATTGGTGGGATTGGGAGAAATAAAACATGCAATTCAAGTGGAAGCGAAAAAA-T
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     197697 440 -    735854 TTGCTGCATTTCGCAGTGACCCATTTACATGGCATTCTCAGCTTAGACTGCATGAGAAGAAATATATGTGGTGAAATGTTGGAACCATTTCTCTCTTGGTCTCTGTTTAATGTTGAAAGGGTGAGCTAATAGGAGGCAATTTCAACTTCACTCCCTCACGCTACCCCTTCCCCCTCCAGGCTGGCCATTTCAAGGATGCAAATTGCATTGC-AAAATCAAACTGAATCATGAAGCATTTGGGCCAGTGCACTGTTTACTTCCATCTGTTTGCAGACACATTTGTGCCTGGTGTTTGGGAGCTCTTTGTATCAATGTTCTGAAAAGGGTCCCTATAACCTTAACCTACTCGAAACCAGTTTGGGATGAATATGATGGGGCTTCTGTGCTATTGCTGGGATTGGGAGAAATAAAGCATGCAATTTAAGTGGAAGCGAAAAAA-T
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30337712 439 + 171630274 CTGCTGCATTTTGCAGTGA-CCACTTACATGGCATTCTCGGCTTAGACTGCATAAGAAGAAATATGTGTGGTGAGATGTTGGAACCATTCCTCTCTTGGTCTCTGCTTAATATTGAAAGGGTGAGCTAATAGGAGTAAATTTCAACTTCACTCCCTCACGCTACCCCATCCGCCTCCAGACTGGCAGTTTCAAGGATGCAAACTGCAATGCAAAAATCAAACTGCCTCATGAAGCATTTGGGCCAGTGCCCTGTTTACTTCCATCTGTTTGCAGATACATTTGTTTCCAGCATTTGGGGATCCTTTGTGTCAATGTTCTGACAAGGGTCCCCATAACTTTAACCTACTCAAAACCAGTCTGGGGTGGATATGATGGGGCTTCTGTGCTATTGCTTGGATTGGGAGAAGTAAAACACGCAATTTAAGTGGAAGCGAAAAAA--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           160000 400 +    515838 CTGCTGCATTTCGCAGT---------------------------------------AAGAAATAAATGTGGTGAAATGTTGGAACCATTTCTCTCTTGGTCTCTGCTTAATATTGAAAGGGTGAGCTAAGAGGAGTAAATTTCAACTTCACTCCCTCACCTTACTCCATCCCCCTCCAGACTGGCAGTTTCAAGGATGTAAATTGCAATGC-AAAATCAAACTGCCTCATGAAGCATTTGGGCCAGTGCACTGTTTACTTCCATCTGTTTGCAGACATATTTGTGCCCAGCATTTGGGAATCCTTTGTATCAGTGTTCTGACAAGGGTTCCTATAACCTTAGCCTACTCAAAACCAGTCTGGGGTGGATATCATGGGGCTTCTGTGCTATTGCTTGGATTGGGAGAAGTAAAACATGCAATTTAAGTGGAAGCAAAAAAA--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     795773 438 -   1771730 CTGCTGCATTTCACTGTGA-CCATTTACATGGCATTCTCAGCTTAGACTGCATAAGAAGAAATATATGTGGTGAAATGTTGGAACTATTTCTCTCTTGGTCTCTGCTTAATATTGAAAGGGTGAGCTAATAGGAGTAAATTTCAACTTCACTCCCTCACGCTGCCCCATCCCCCTCCAGACTGGCAGTTTCAAGCATGCAAATTGCAATGC-AAAATCAAACTGCCTCATGAAGCATTTGGGCCAGTACACTGTTTACTTACATCTGTTTGCAGATACATTTGTGCCCAGTGTTTGGGAATCCTTTATATCAATGTTCTGACAAGGGTCCCCGTAATCTTAACCTACTCAAAACCAGTTTGGGATGGATATAATGGGGCTTCTGTGCTATCGCTTGGATTGGGAGAAGTAAAACACACAATTTAAGTGGAAGCAAAAAAA--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     274965 438 -    383796 CTGCTGCATTTCGCAGTGA-CCATTTACATGGCATTCTCAGCTTAGACTGCATAAGAAGAAATATATGTGGTGAGATGTTGGAACCATTTCTTTCTTGGTCTCTGCTTAATATTGAAAGGGTGAGCTAATAGGAGTAAACTTCAACTTCACCCCTACATGCTACCCCATCC-CCTCCAGCCTAGCAGTTTCAAGGATGCAAATTGCAATGC-AAAATCAAACTGCTTCATGAAGCATTTGGGCAAGTGCACTGTTTACTTCCATCTGTTTGCAGATACATTTGTGTCCAGCGTTTGGGAATCCTTTGTATCAATGTTCTGACAAGGGTCCCCATAACTTTAACCTACTCAAAACCAGTCTGGGGTGTATATGATGGGGCTTCTGTGCTATTGCGTGGATTGGGAGAAGTAAAACGCACAATTTAAGTGGAAGCAAAAAAAT-
i aotNan1.NW_018496904v1   C 0 I 20
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I
e colAng1.NW_012115577v1     172277   0 -   1829203 C
e chlSab2.chr17            29535032   0 -  71996105 C

a score=76387.000000
s hg38.chr6_GL000254v2_alt  1377946 16 +   4827813 TAAAAATaaaataaat------
s panTro5.chr6             30251331 16 + 175400573 TAAAAATaaaataaat------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30481854 16 + 173848474 TAAAAATaaaataaat------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     188481 16 +   2037526 TAAAAAtaaaataaat------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74860801 16 + 122973662 TAAAAATaaaataaat------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30732067 16 + 172585720 TAAAAATaaaataaat------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30028593 16 - 170955103 TAAAAAtaaaataaat------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     264112 16 +   1495729 TAAAAATaaaataaat------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     373089 16 -    863181 TAAAAATaaaataaat------
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     198137 16 -    735854 TAAAAAtaaaataaat------
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30338151 21 + 171630274 TAAAAAT-AAAtaaataattag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           160400 21 +    515838 TAAAAAT-AAAtaaataattaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     796211 21 -   1771730 TAAAAAT-AAAtcaaaaatcaa
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464  5 +  18854210 I
e aotNan1.NW_018496904v1     275403 20 -    383796 I
e colAng1.NW_012115577v1     172277  0 -   1829203 C
e chlSab2.chr17            29535032  0 -  71996105 C

a score=13370786.000000
s hg38.chr6_GL000254v2_alt  1377962 1852 +   4827813 aaatccattgcctgattccatgtctccctccaattaccg-ccccatttctctgacactccttatagaataattccttaGTCAATTGTCTCATGATGTTTTTAATAtatcaaatggatttatggacagtgtttcaaaagccaaatacttctacaaggcttgttatgaacacagatgtccccaatctttcatgtacaccatttcctgaatcctagaggcaatctac----tttattctgcctaa-ttttttgatcgtt-acatctgtgcctccaaatagtgtgttatagtgccgttttg-tttttcactcttatgtatcatccttagtgtatagctccctttcatatacccctctcctctcaatatagttattttataattttggttagctgggtgttcactatttatat---tattatgaccacagaaatgctattcacagctagactaggaaatgctattcacaattagattaggaaatgctgttcacaattagattaggaaatgctattcacaaggattattttccttcctggaattgactttttaatttccctggaattaataaatgttttatcccttcatgtgcttaatttctgttgtactcattataaaatctcttccaaattt-----ccctccaaggcctctgctatagtttgaatgtgttccccaaagttcatgtgttagaaacttgatccccaatgcagtgatattggaaagtaaggcctaatagaagctgtctgagtcatgagcgcagagccctcatgaacaaattaatatcattattatggcagtgagcccataataataatattgtcctctctcttgcccttgacccacttgccatgtgaagacacagcaagaaggctcttgccaaatgctggtggcttgatcttgga-ttcctagcc-tcacaactgagaaaacaaatttctgttcttcataactgacccagactatggcattctgttatagcagcataaatgaactaagacagtctccatgaatatattcaaccatgccccgtgttctaccaacctcatctttgtgaagacacttcccttggtcctgccacacgtggactggtgcatgcacatctgggctgatttccaagatcgtcttcacctcatcctgggcatccctctgcctctctcttatgctggctctcctattgcctggatcccatgtgtccccttttttggttttctccatcgtttttgtttctcatttcatct----gtgttcctaagggaacatggaaagtaaaatctgaaagcctaagcttctgaaaatgtcttcgggctaccctagcacttattccaacctggacttggtatggaattctgtattgaaaacatttttcctaggaatttccatgacattccatcaacattttttagcttctaatgttgtttttcttgccttttgatgtttttgggatttcttcttttccacccaccttctaaaatttcattgtgatgtgtcttggtgtgggtctgttttcatctactatagtaagaacttggttggggccattacaagttaaatttttgtctgtaaacttggagaaa-ttttttt-attttaaataatttctatctttccattcttttagaatttgtattattaagttgcaggaaatccttgactgatagcctagtattcgtatagtttttctgtctttcttgacattgtttttccatttttaatatttagtggtagtacaaatttactcttccaagtgatctattgaaatacttatttaaatgatcactttttgatttccaagagtgctttttggttctctgattgtatataattttataaaatcctattcatcatttataaatgccatat-----------cttattatttcttttaggtat
s panTro5.chr6             30251347 1856 + 175400573 aaatccattgcctgattccatgtctccctccaattaccg-ccccatttctctgacactccttatagaataattccttaGTCAATTGTCTCATGATGTTTTTAATAtatcaaatggatttatggacagtgtttcaaaagccaaatacttctacaaggcttgttatgaacacagatgtccccgatctttcatgtacaccatttcctgaatcctagaggcaatctactttatttattctgcctaa-ttttttgatcgtt-acatctgtgcctccaaatagtgtgttatagtgccattttg-tttttcactcttatgtatcatccttagtatatagctccctttcatatacccctctcctctcaatatagttattttataattttggttagctgggtgttcactatttatat---tattatgaccacagaaatgctattcacagctagactaggaaatgctattcacaattagattaggaaatgctgttcacaattagattaggaaatgctattcacaaggattattttccttccttgaattgactttttaatttccctggaattaataaatgttttatcccttcatgtgcttaatttctgttgtactcattataaaatctcttccaaattt-----ccctccaaggcctctgctatagtttgaatgtgttccccaaagttcatgtgttggaaacttgatccccaatgcagtgatattggaaagtaaggcctaatagaagctgtctgagtcatgagcgcagagccctcatgaacaaattaatatcattattatgggagtgagcccataataacaatattgtcctctctcttgcccttgacccacttgccatgtgaagacacagcaagaaggctcttgccaaatgctggtggcttgatcttgga-ttcctagcc-tcacaactgagaaaacaaatttctgttcttcataactgacccagactatggcattctgttatagcagcattaatgaactaagacagtctccatgaatatattcaaccatgccccgtgttctaccaacctcatctttgtgaagacacttcccttggtcctgccacacgtggactggtgcatgcacatctgggctgatttccaagattgtcttcacctcatcctgggcatccctctgcctctctcttatgctggctctcctattgcctggatcccatgtgtccccttttttggttttctccatcatttttgtttctcatttcatcc----gtgttcctaagggaacatggaaagtaaaatctgaaagcctaagcttctgaaaatgtcttcaggctaccctagcacttattccaacctggacttggtatggaattctgtattgaaaacatttttcctaggaatttccatgacattccatcaacattttttagcttctaatgttgtttttcttgccttttgatgtttttgggatttcttcttttccacccaccttctaaaatttcattgtgatgtgtcttggtgtgggtctgttttcatctactatagtaagaacttggttggggccattacaagttaaatttttgtctgtaaacttggagaaa-ttttttt-attttaaataatttctatctttccattcttttagaatttgtattattaagttgctggaaatccttgactgatagcctagtattcgtatagttcttctgtctttcttgacattgtttttccatttttaatatttagtggtagtacaaatttactcttccaagtgatctattgaaatacttatttaaatgatcactttttgatttccaagagtgctttttggttctctgattgtatataattttataaaatcctattcatcatttataaatgccatat-----------cttattatttcttttaggtat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30481870 1856 + 173848474 aaatccattgcctgattccatgtctccctccaattaccg-ccccatttctctgacactccttatagaataattccttaGTCAATTGTCTCATGATGTTTTTAATAtatcaaatggatttatggacagtgtttcaaaagccaaatacttctacaaggcttgttatgaacacagatgtccccaatctttcatgtacaccatttcctgaatcctagaggcaatctactttatttattctgcctaa-ttttttgatcgtt-acatctgtgcctccaaatagtgtgttatagtgccattttg-tttttcactcttatatatcatccttagtgtatagctccctttcatatacccctctcctctcaatatagttattttataattttggttagctgggtgttcactatttatat---tattatgaccacagaaatgctattcacagctagactaggaaatgctattcacaattagattaggaaatgctgttcacaattagattaggaaatgctattcacaaggattattttccttccttgaattgactttttaatttccctggaattaataaatgttttatcccttcatgtgcttaatttctgttgtactcattataaaatctcttccaaattt-----ccctccaaggcctctgctatagtttgaatgtgttccccaaagttcatgtgttggaaacttgatccccaatgcagtgatattggaaagtaaggcctaatagaagctgtctgagtcatgagcgcagagccctcatgaacaaatcaatatcattattatgggagtgagcccataataacaatattgtcctctctcttgcccttgacccacttgccatgtgaagacacagcaagaaggctcttgccaaatgctggtggcttgatcttgga-ttcctagcc-tcacaactgagaaaacaaatttctgttcttcataactgacccagactatggcattctgttatagcagcataaatgaactaagacagtctccatgaatatattcaaccatgccccgtgttctaccaacctcatctttgtgaagacacttcccttggtcctgccacacgtggactggtgcatgcacatctgggctgatttccaagattgtcttcacctcatcctgggcatccctctgcctctctcttatgctggctctcctattgcctggaccccatgtgtccccttttttggttttctccatcgtttttgtttctcatttcatcc----gtgttcctaagggaacatggaaagtaaaatctgaaagcctaagcttctgaaaatgtcttcaggctaccctagcacttattccaacctggacttggtatggaattctgtattgaaaacatttttcctaggaatttccatgacattccatcaacattttttagcttctaatgttgtttttcttgccttttgatgtttttgggatttcttcttttccacccaccttctaaaatttcattgtgatgtgtcttggtgtgggtctgttttcatctactatagtaagaacttggttggggccattacaagttaaatttttgtctgtaaacttggagaaa-ttttttt-attttaaataatttctatctttccattcttttagaatttgtattattaagttgctggaaatccttgactgatagcctagtattcgtatagttcttctgtctttcttgacattgtttttccatttttaatatttagtggtagtacaaatttactcttccaagtgatctattgaaatacttatttaaatgatcactttttgatttccaagagtgctttttggttctctgattgtatataattttataaaatcctattcatcatttataaatgccatat-----------cttattatttcttttaggtat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     188497 1853 +   2037526 aaatccattgcctgattccatgtcttcctccaattaccg-ccccatttctctgacactccttatagaataattccttagtcaattgtctcatgatgtttttaatAtatcaaatggatttatggacagtgtttcaaaagccaaatacttctacaaggcttgttatgaacacagatgtccccaatctttcatgtacaccatttcctgaatcctagaggcaatctactttatttattttgcctaa-ttttttgatcgtt-acatctgtgcctccaa--agtgtgttacagtgccgttttgttttttcactcttatgtatcatccttagtgtatagctccctttcatatacccctgtcctctcaatatagatattttataattttggttagctgggtgttcactatttatat---tattatgaccacagaaatgctattcacagctagactaggaaatgctattcacaattagattaggaaatgctattcacaattagattaggaaatgctattcacaaggatta-tttccttccttgaactgactttttaatttccctggaattaataaatgttttatcccttcatgtgcttaatttctgttgtactcattataaactctcttccaaattt-----ccctccaaggcctctgctatagtttgaatgtgttccccaaagttcatgtgttggaaacttgat-cccaatgcagtgatattggaaagtaaggcctaatagaagctgtctgagtcatgagcgcagagccctcatgaacaaattaatatcattattatgggagtgagcccatgataataatattgtcctctctcttgcccttgatccacttgccatgtgaagacacaacaagaaggctcttgccaaatgctggtggcttgatcttgga-ttcctagcc-tcacaactgagaaaacaaatttctgttcttcataactgacccagactatggcattctgttatagcagcataaatgaaccaagacagtctccatgaatatattcaaccatgccccgtgttctgccaacctcatctttgtgaagacacttcccttggtcctgccacatgtggactggtgcatgcacatctgggctgatttccaagatcgtcttcacctcatcctgggcatccctctgcctctctcttatgctggctctcctattgcctggatcccatgtgtccccttttttggttttctccatcgtttttgtttctcatttcatcc----gtgttcctaagggaacatggaaagtaaaatctgaaagcctaagcttctgaaaatgtcttcaggctactctagcacttattccaacctggacttggtatggaattctgtattgaaaacatttttcctaggaatttccatgacattccatcaacattttttagcttctaatgttgtttttcttgccttttgatgtttttgggatttcttcttttccacccaccttctaaaatttcactatgatgtgtcttggtgtgggtctgttttcatctactatagtaagaacttggttggggccattacaagttaaatttttgtctgtaaacttggataaa-ttttttt-attttaaataatttctatctttccattcttttagaatttgtattattaagttgctggaaatccttgactgatagcctagtattcgtatagttcttctgtctttcttgacattgtttttccatttttaatatttagtggtagtacaaatttactcttccaagtgatctactgaaatacttatttaaatgatcactttttgatttccaagagtgctttttggttctctgattgtatataattttataaaatcctattcatcatttataaatgccatat-----------cttattatttcttttaggtat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74860817 1858 + 122973662 aaatccattgcctgattccatgtctccctccaattactg-ccccatttctctgacactccttatagaataattccttaGTCAATTGTCTCATAATGTTTTTAATAtatcaaatggatttatggacagtgtttcaaaagtcaaatacttctacaaggcttgttatgaacacagatgtccccaatctttcatgtacaccatttcctgaatcctagaggcaatctattttatttattttgcctaa-ttttttgatagtt-acatctgtgcctccaaatagtgtgttatagtgctgttttg-tttttcactcttatgtatcatccttagtgtatagctccctttcatatacccctgtcctctcaaaatagttattttataattttggttagctgggtgttcactgtttatat---tattatgaccagagaaatgctattcacagctagactaggaaatgctattcacaattagattaggaaatgctgttcacaattagattaggaaatgctgttcacgaggattattttccttccttgaattgaatttttaatttccctggaattaataaatgttttatcccttcatgtgctcaatttctattgtactcattataaaatctcttccaaattt-----gcctccagggcctctgctatagtttgaatgtgttccccaaagttcacgtgttggaaagttgatccccaatgcagtgatattggaaagtaaggcctaacagaagctgtctgagtcatgagggcagagccctcatgaataaattagtatcgttattgtgggagtgagcccatgataataatattgtcctctctcttgcccttgacccacttgccatgtgaagacacagcaagaaggctcttgccaaatgctgatggcttgctcttgga-ttcctagccttcacaactgagaaaacaaatttctgttcttcgtaactgactcagactatggccttctgttatagcagcataaatgaactaagacagtctccatgaatatattaaaccatgtcccgtgttctaccaacctcatctttgtgaagacacttcccttggtcctgccacacgtggactggtgcatgcacatctgggctgatttccaagatggtcttcacctcatcctgggcgtccctctgcctctctcttatgctggctctcctattgcctggatcccatgtgtcccctttcttggttttctccatcatttttgtttctcatttcatcc----gtgttcctcagggaacacggaaagtaaaatctgaaagcctaagcttctgaaaatgtctttaggctaccctagcacttattccaacctggacttggtatggaattctgtattgaaaacatttttcctaggaatttccacaacattccatcaacattttttagcttccaatgttgcttttcttgccttttgatgtttttgggatttcttcttttccacccaccttctaaaatttcattgtgatgggtcttggtgtgggtctgttttcatctactatagtaagaacttggttggggccattacaagttaaatttttgtctgcaaacttggagaaatttttttt-attttaaataatttctatctttccattcttttagaatttgtattattaagttgctggaaatccttgactgatagcctagtattcgtatagttcttctgtctttcttgacattgcttttccatttttaatatttagtggtaatacaaatttactcttccaagtcgtctattgaaatacttatttaaatgatcaatttttgatttccaagagtgctttttggttctctgattgtatataattttataaaatcctattcatcatttataaatgccgtat-----------cttattatttcttttaggtat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30732083 1818 + 172585720 atatccattgcctgattccatgtctccctccaattactgcccccatttctctggtactcctcatagaataattcATGAGTCAATTGTCTCATGATGTTTTTAACAtatcaaatggatttatggacagtgtttcaaaagtcaaatacttctacaaggcttgttatgaacacagatgtccccactctttcatgtacaccatctcctgaatcctagaggcaatctac----tttattttgcctaa-tattttgatggtt-acatctgtgcctccaaatagtgtgttatagtgctgttttg-tttttcactcttatgtatcatcGTTAGTGTATAGCTCCCTTTCATATAAccctgtcctctcaatatagtcattttataattttggttagctgggtgttcactatttatat---tattatgaccacagaaatgctattcacagctagactaggaaatgcta-------------------------ttcacaattagattaggaaatgctattcacaaggattattttccttccttgaattgagtttttaatttccctggaactgataaatgttttatcccttcatgtgctcaatttctgttgtactcattataaaatctcttccaaattt-----ccctcctgggcctctgctgtagtttgaatgtgtcccccaaagttcatgtgttggaaacttgatccccaatgcagtgatattggaaaataaggcctaacagaagctgtctgagtcatgagggcagagccctcat----aaattaatatcattattgtgggaatgagcacacaataatgatattgtcttctctcttgcccttgacccacttgccatatgaagacccagcaagaaggctcttgccaaatgctggtgacttgatctttga-ttctcagccttcagaactgagaaaacaaatttctgttcttcataactgacccagactatggcattctgttatagcagtataaatgaactaagacagtctccatgaatatattcaaccatgtcccatgttctaccaacctcatctttgtgaagacacttccctcagtcccgccactggtggactggtgcatgcacatctgggctgacttccaagatcttcttcacctcatcctgggcatccttctgcttctctcttgtgttggctctcctactgcctggatcccatgtgtccccttttttggttttctccatcatttttgtttctcatttcatccagcagta-tcctaagggaacgtggaaagtaaaatctgaaaccctaagcttctgaaaatgtctttagtctaccctagcacttattccaacctggacttggtatggaattccatattgaaaacatttttcctaggaatttccatgacattccatcaacattttttagcttccaacgttgtttttcttgccttttgatgtttttgggatttcttcttttccacccaccttctaaaatttcattgtgatgtgtcttggtgtgggtctgttttcatctactatagtaagaacttggttggggccattacaagtaaaatttttgtctgtaaacttggagaga-tttttttgattttaaataatttctatctttccattcttttagaatttgc-------agttgctggaaatcct----tgatagcctagtattcgtatagttcttctgtctttcttgacattgcttttccatttttaatatttagtggtagtacaaatttactcttccaagtcatctattgaaatatttatttaaatgatcacattttgatttccaagagttctttttggttctctgattatatataattttataaaatcctattcatcatttataaatgccatat-----------cttactatttcttttaggtat
i rheMac8.chr4             C 0 I 33
s macFas5.chr4             30028609 1822 - 170955103 aaatccattgcctgattccatgtctccctccaattactg-ccccatttctctggtactcctcatagaataattcctgagccaattgtctCATGATATTTTTAACAtatcaaatggatttatggacagtgtttcaaaagtcaaatacttctacaaggcttgttatgaacacagatgtccccaatctttcatgtacaccatctcctgaatcctagaggcaatctactttatttattttgcctat-ttttttgatggtt-acatctgtgcctccaaatagtgtgttatagtgctgttttg-tttttcactcttatgtatcatcGTTAGTGTATAGCTCCCTTTCATATAAccctgtcctctcaatatagtcattttataattttggttagctgggtgttcac----tatat---tattatgaccacagaaatgctattcacagctagactaggaaatgcta-------------------------ttcacaattacattaggaaatgctattcacaaggattattttccttccttgaattgactttttaatttccctggaattaataaatgttttatcccttcatgtgctcaatttctgttgtactcattataaaatctcttccaaatttccccccccccccgggcctctgttgtagtttgaatgtgtcccccaaagttcatgtgttggaaacttgatccccaatgcagtgatattggaaaataaggcctaacagaagctgtctgagtcatgagggcagagccctcat----aaattaatatcattattgtgggaatgagcacacaataatgatattgttttctctcttgcccttgacccacttgccatatgaagacccagtaagaatgctcttgccaaatgctggtgacttgatcttgga-ttcccagccttcagaactgagaaaacaaatttctgttcttcataactgacccagactatggcattctgttatagcagtataaatgaactaagacagtctccatgaatatattcaaccatgtcccatgttctaccaacctcatctttgtgaagacacttccctcagtcccgccaccggtggactggtgcatgcacatctgggctgacttccaagatcttcttcacctcatcctgggcatccttctgcttctctcttgtgttggctctcctactgcctggatcccatgtgtccccttttttggttttctccatcagttttgtttctcatttcatccagcagta-tcctaaggtaacacggaaagtaaaatctgaaaccctaagcttctgaaaatgtctttagtctaccctagcacttattccaacctggacttggtatggaattccgtattgaaaacatttttcctaggaatttccatgacattccatcaacattttttagcttccaatgttgtttttcttgccttttgatgtttctgggatttcttcttttccacccaccttctaaaatttcattgtgatgtgtcttggtgtgggtctgttttcatctactatagtaagaacttggttggggccattacaagtaaaatttttgtctgtaaacttggagaga-tttttttgattttacataatttctatctttccattcttttAGAATTTGC-------AGTTGCTGGAAATCCT----TGATAGCCTAGTATTCGTATAGTTCTTCTGTCTGTCTTGACATTGCTTTTCCATTTTTAATATTTAGGGGTAGTAcaaatttactcttccaagtcatctattgaaatacttatttaaatgatcactttttgatttccaagagttctttttggttctctgattgtatataattttataaaatcctattcatcatttataaatgccatat-----------cttattatttcttttaggTAT
i macFas5.chr4             C 0 I 32
s macNem1.NW_012012100v1     264128 1818 +   1495729 atatccattgcctgattccatgtctccctccaattactgcccccatttctctggtactcctcatagaataattAGTGAGTCAATTGTCTCATGATGTTTTTAACAtatcaaatggatttatggacagtgtttcaaaagtcaaatacttctacaaggcttgttatgaacacagatgtccccaatctttcatgtacaccatctcctgaatcctagaggcaatctac----tttattttgcctaa-tattttgatggtt-acatctgtgcctccaaatagtgtgttatagtgctgttttg-tttttcactcttatgtatcatcGTTAGTGTATAGCTCCCTTTCATATAAccctgtcctctcaatatagtcattttataattttggttagctgggtgttcactatttatat---tattatgaccacagaaatgctattcacagctagactaggaaatgcta-------------------------ttcacaattagattaggaaatgctattcacaaggattattttccttccttgaattgactttttaatttccctggaattgataaatgttttatcccttcatgtgctcaatttctgttgtactcattataaaatctcttccaaattt-----ccctcctgggcctctgctgtagtttgaatgtgtcccccaaagttcatgtgttggaaacttgatccccaatgcagtgatattggaaaataaggcctaacagaagctgtctgagtcatgagggcagagccctcat----aaattaatatcattattgtgggaatgagcacacaataatgatattgtcttctctcttgcccttgacccacttgccatatgaagacccagcaagaaggctcttgccaaatgctggtgacttgatctttga-ttctcagccttcagaactgagaaaacaaatttctgttcttcataactgacccagactatggcattctgttatagcagtataaatgaactaagacagtctccatgaatatattcaaccatgtcccatgttctaccaacctcatctttgtgaagacacttccctcagtcccgccactggtggactggtgcatgcacatctgggctgacttccaagatcttcttcacctcatcctgggcatccttctgcttctctcttgtgttggctctcctactgcctggatcccatgtgtccccttttttggttttctccatcatttttgtttctcatttcatccagcagta-tcctaagggaacgtggaaagtaaaatctgaaaccctaagcttctgaaaatgtctttagtctaccctagcacttattccaacctggacttggtatggaattccatattgaaaacatttttcctaggaatttctatgacattccatcaacattttttagcttccaatgttgtttttcttgccttttgatgtttttgggatttcttcttttccacccaccttctaaaatttcattgtgatgtgtcttggtgtgggtctgttttcatctactatagtaagaacttggttggggccatcacaagtaaaatttttgtctgtaaacttggagaga-tttttttgattttaaataatttctatctttccattcttttcgaatttgc-------agttgctggaaatcct----tgatagcctagtattcgtatagttcttctgtctttcttgacattgcttttccatttttaatatttagtggtagtacaaatttactcttccaagtcatctattgaaatatttatttaaatgatcacattttgatttccaagagttctttttggttctctgattatatataattttataaaatcctattcatcatttataaatgccatat-----------cttactatttcttttaggTAT
i macNem1.NW_012012100v1   C 0 I 33
s cerAty1.NW_012002535v1     373105 1821 -    863181 aaatccattgcctgattccatgtctccctccaattactg-ccccatttctctggtactcctcatagaataattcctGAGTCAATTGTCTCATGATATTTTTAACAtatcaaatggatttatggacagtgtttcaaaagtcaaatacttctacaaggcttgttatgaacacagatgtccccaatctttcatgtacaccatctcctgaatcctagaggcaatctactttatttattttgcctaa-ttttttgatggtt-acatctgtgcctccaaatagtgtgttatagtgctgttttg-tttttcactcttatgtatcatcgttagtgtatagctccctttcatataaccctgtcctctcaatatagtcattttataattttggttagctgggtgttcactatttatat---tattatgaccacagaaatgctattcacagctagactaggaaatgctc-------------------------ttcacaattacattaggaaatgctattcacaaggattattttccttccttgaattgactttttaatttccctggaattaataaatgttttatcccttcatgtgctcaatttctgttgtactcattataaaatctcttccaaattt-cccccccccccgggcctctgttgtagtttgaatgtgtcccccaaagttcatgtgttggaaacttgatccccaatgcagtgatattggaaaataaggcctaacagaagctgtctgagtcatgagggcagagccctcat----aaattaatatcattattgtgggaatgagcacacaataatgatattgtcttctctcttgcccttgacccacttgccatatgaagacccagtaagaatgctcttgccaaatgctggtgacttgatcttgga-ttcccagccttcagaactgagaaaacaaatttctgttcttcataactgacccagactatggcattctgttatagcagtataaatgaactaagacagtctccatgaatatattcaaccatgtcccatgttctaccaacctcatctttgtgaagacacttccctcagtcccgccaccggtggactggtgcatgcacatctgggctgacttccaagatcttcttcacctcatcctgggcatccttctgcttctctcttgtgttggctctcctactgcctggatcccatgtgtccccttttttggttttctccatcagttttgtttct-atttcatctagcagta-tcctaagataacacggaaagtaaaatctgaaaccctaagcttctgaaaatgtctttagtctaccctagcacttattccaacctggacttggtatggaattccgtattgaaaacatttttcctaggaatttccatgacattc---caacattttttagcttccaatgttgtttttcttgccttttgatgtttctgggatttcttcttttccacccaccttctaaaatttcattgtgatgtgtcttggtgtgggtctgttttcatctactatagtaagaacttggttggggccattacaagtaaaatttttgtctgtaaacttggagaga-tttttttgattttacataatttctatctttccattcttttagaatttgc-------agttgctggaaatcct----tgatagcctagcattcgtatagttcttctgtctgtcttgacattgcttttccatttttaatatttagtggtagtacaaatttactcttccaagtcatctattgaaatacttatttaaatgatcactttttgatttccaagagttctttttggttctctgattgtatataattttataaaatcctattcatcatttataaatgccatat-----------cttattatttcttttaggTAT
i cerAty1.NW_012002535v1   C 0 I 16
s manLeu1.NW_012107142v1     198153 1818 -    735854 aaatccattgcctgattccatgtctccctccaattactgcccccatttctctggtactcctcatagaataattcctGAGTCAATTGTCTCATGATGTTTTTAACAtatcaaatggatttatggatagtgtttcaaaagtcaaatacttctacaaggcttgttatgaacacagatgtccccaatctttcatgtacaccatctcctgaatcctagaggcaatctac----tttattttgcctaa-tattttgatggtt-acatctgtgcctccaaatagtgtgttatagtgctgttttg-tttttcactcttatgtatcatcgttagtgtatagctccctttcatataaccctgtcctctcaatatagtcattttataattttggttagctgggtgttcactatttatat---tattatgaccacagaaatgctattcacagctagactaggaaatgcta-------------------------ttcacaattagattaggaaatgctattcacaaggattattttccttccttcaattgacttcttaatttccctggaattaataaatgttttatcccttcatgtgctcaatttctgttgtactcattataaaatctcctccaaattt-----ccctcctgggcctctgctgtagtttgaatgtgtcccccaaagttcatgtgttggaaacttgatccccaatgcagtgatattggaaaataaggcctaacagaagctgtctgagtcatgagggcagagccctcat----aaattaatatcattattgtgggaatgagcacacaataatgatattgtcttctctcttgcccttgacccacttgccatatgaagacccagcaagaaggctcctgccaaatgctggtgacttgatcttgga-ttcccagccttcagaactgagaaaacaaatttctgttcttcataactgacccagactatggcattctgttatagcagtataaatgaactaagacagtctccatgaatatattcaaccatgtcccatgttctaccaacctcatctttgtgaagacacttccctcagtcccgccaccggtggactggtgcatgcacatctgggctgacttccaagatcttcttcacctcatcctgggcatccttctgcttctctcttgtgttggctctcctactgcctggatcccatgtgtccccttttttggttttctccatcatttttgtttctcatttcatctagcagta-tcctaagggaacatggaaagtaaaatctgaaaccctaagcttctgaaaatgtctttagtctaccctagcacttattccaacctggacttggtatggaattccatattgaaaacatttttcctaggaatttccatgacattccatcaacattttttagcttccaatgttgtttttcctgccttttgatgtttttaggatttcttcttttccacccaccttctaaaatttcattgtgatgtgtcttggtatgggtctgttttcatctactatagtaagaacttggttggggccattacaagtaaaatttttgtctgtaaacttggagaga-tttttttgattttaaataatttctatctttccattcttttagaatttgc-------agttgctggaaatcct----tgatagcctagtattcgtatagttcttctgtctttcttgacattgcttttccatttttaatatttagtggtagtacaaatttactcttccaagtcatctattgaaatacttatttaaatgatcactttttgatttccaagagttctttttggttctctgattatatataattttataaaatcctattcatcatttataaatgccatat-----------cttactatttcttttaggTAT
i manLeu1.NW_012107142v1   C 0 I 1200
s calJac3.chr4             30338172 1798 + 171630274 aaatccattgtcttgttccatgtctccctccaactactg-ccccatttctctgacacttcttatagaataattcctGA-------GTCTCATGATGTTTTTTAAAtatcaaatggatttatggacagtgtttcaaaagtcaaatacttctacaagacttgttataaatacagatgtccccaatctttcatgtccaccatttcctgaatcccagagacaatctactttacttaacttgactaa-tttttttattgtt-acatctgtgcctctaagtagtgtgttatagtgctgttttg-tttttcactcttatgtatcatgctgagcggatagctccctttcacatatccctgtcctctcaatatagtgattttacaattttgcttagctgggcgttcactatttgtattactattatgaccatggaaatgctattcacaactacactaggaaatgcta--------------------------------------------------ttcacaaggattactttcctttgttgaattgactttctattttccctggaattagtaaatattttatcctttcatgtgctcaatttctgttatactcattacaaaatctcttccaaattt----cccccccagggcatctgctatagtttggatgtgtcccccaaagttcatgtattggaaacttgatccccaatgtggtcatattggaaagtaaagcctaatagaagcagtctgagttatgaggactctgccctcatgaataaattaatatcattagtgtgggactgggcccacactaatgatattgtcctctctcttgcccttgacccgtttgccatgtgaagacacagcaagaaggccccttccaaatgctggtggcttgatcttggacttcccagccttcagaactgaaaaaacaaatttcggttcttcacaactgacccagactaaggcgttctgttatagcagcataaataaactaaggcagtctccatgaatatatacaagcatgtcctgtattctaccaacctcatctttatgaagacacttccctcagtcctgccacacggggacttgtgcatgcacatctggactgacttccaaga---ccttcacctcatcctgggcatccctctgcctctctcttgtgctggctctcctgttgcctggatcccatgtgtccccttttttggttttctccatcatttttgtttctcatttcatctagcagta-ccctaagggaactt-gaaagtaaaatttgaaaccctaagcttctgaaaacgtctttaggctaccctagcacttactccaacctggatttggtatagaattgtgtgttgaaaacatttttcctaggaatttccatgacattttatcaatattttttagtttccaatgttgtttttcttgtcttttgatgtgtttgggatttcttcttttccacccaccttctaaaatttcattgtgatgtatcttggtgtggg--tgtttttatctattatcgtaagaacttggttggggtcattacaagttaaatttttgtc-gtaaacttgaagaaa-ttttcttgattttcaatcatttctatctttccatcctttcagaatttgtatcattaagttgctgggaatct----ttgatagccgagtatttgtgtagttcttctgtctttcttgacattgcttttctatttttaatatctagtggtagtacaaatttgctcttccaactcatctattaaattacttattcaaacgatcactttttattttgcaagagtgctttttggttctctgattgtatataattttgtataatcctattcatcatttgtaaatgccatat-----------attactctatcttttaggtat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           160421 1801 +    515838 aaatctattgtctgattccatgtctccctccaactactg-tcccatttctctgacacttcttatagaataattcctGA-------GTCTCATGATGTTTTTTAAAtatcaaatggatttatggacagtgtttcaaaagtcaaatacttctacaagacttgctataaacacagattttcccaatctttcatgtacaccatttccggaattgcagaggcaatctactttacttattttgcctaattttttttattgtt-acatctgtgcctctaaattgtgtgttatagtactgttttg-tttttcactcttaagtatcatgcttagtgaatagctccctttgacatatccctgtcctctcaatatagttattttacaattttgcttagctgggtgttcactatttgtatttttattatgaccacaaaaatgctattcacaactagactaagaaatacta--------------------------------------------------ttcacaaggattattttcctttgttgaattgactttttattttccctggaattaataaatattttatcccttcatgtgctcaatttctgttatactcattataaaatctcttccaaattt-----ccccccagggcctctgctatagtttgaatgtgtcccccaaagttcatgtattggaaagttgatccccaatgcggtcatattggaaagtaaggcctaatagaagcagtttgagtcatgaggactctgccctcatgaataaa-taatgtcattagtgtgggaacaggccgacaataatgatactgtcctgactcttgcccttgacccatttgccatgtgaagacacagcaaggaagccctttccaaatgctggtggcttgatcttggacttcccagccttcagaactgaaaaaacaaatttctgttcttcacaactgacccagactatggcattcttttacagcagcataaataaactaaggcagtctccatgaatacacacaaccacgtcccatattctaccaacctcatctttatgaagacgtttccctcagtcctgccacacgtggactggtgcatgcacatctgggttgacttccaaga---ctttcacctcatcctgggcatccctccgcctgtctcttgtgctggctctcctgttgcctggatcccatgtgt-cccttttttggttttctccatcatttttgtttctcatttcatctagcagta-tcctaagggaacac-aaaagtaaaatttgaaagcctaagcttctgaaaatgtctttaggctaccctagcacttatttcaacctggactgggtatagaattctgtgtcaaaaacatttttcctaggaatttccatgacattttatcaatattttttagtttccaatgttgtttttcttgccttttgatgtttttggaatttcttcttttccacccaccttctaaaatttcactgtgatgcatcttggtgtggg--tgttttcatctactatagtaagaacttggttggggtcattataagttaaatttttgtctgtaaacttgaagaat-ttttttaaattttaaatcatttctatctttccatcctttcagaatttgtatcattaggttgctggaaatctttgattgatagactagcatttgtatagttcttctgtctttcttgacattgcttttccatttttaatatttagtggtagtacaaatttgctcttccaactcatctattaaattacttatttaaatgatcagtttttgatttccaagagtgctttttggttctctgattgtatataattttatataattctattcattatttgtgaatgccatat-----------attattacatcttttaggtat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     796232 1806 -   1771730 aaatccattgtctgattccatgtctccctccaactactg-ccccatttctctgacgctccttatagaataattcctGA-------GTCTCATGATGTTTTTTAAAtatcagatggatttatggacagtgtttcaaaagtcaaattcttctacaaggcttattataaacacagatgtccccaatctttcatgtacacaatttcctgaatcccagaagcaatctactttacttattttgcctaa----ttttattgttaacatctgtgcctctaaatagtgtgttgtagtgctgctttg-tttttcaCTC--ATGCATCATGCTTAGCTGATAGCCCCCTttcacgtatccctgtcctctcagtatagttattttacaatttttcttagctgggtgttcactatttgtattattattatgaccacggaaatgctattcacaactagactaggaaatgcct--------------------------------------------------ttcacaaggattattttcccttgttgaattgactttttatgttccctggaattaataaatattttatcccttcatgtgctcaatttctgttatactcattataaaatcccttccaaattt-----ccccccagggcatctgctatagttcgtatgtgtcccccaaagttcatgtattggaaacttgatccccaacgtggtcatattgaaaagtaaggcctaatagaagcagtctgagttatgaggactctgccctcatggataaattaatatcattagtgtgggagtaagctcac---aatgatattgtcctctctcttgctcttgacccatttgccatgtgaagacacagcaagaaggccctttccaaatgctggcggcttgatcttggacttcccagccttcagaactgaaaaaacaaatttctgttcttcacaactgacccagactatggcattctgttatagcagcataaatgagctaaggcagtctccatgaatacatacaaccacgtcccgtattctaccaacctcatctttatgaagacacttccctcagtcctcccacacgtggactggcgcatgtacatctgggctgacttccaaga---tcttcacctcatcctgggcatccctctgcctctctcttgtgctggctctcctgttgcctggatcccatgtgtcccctttcttggttttctccatcattcttgtttctcatttcatctagcagta-tcctaagggaacag-gaaagtaaaatttgaaagcctaagcttctggaaatgtctttgggctaccctagcacttattccaacctggactcggtatagaattctgtgctgaaaacatttttcgtaggaatttccatgacattttatcaatattttttagtttccaaagttgtttttcttgacttttgatgtttttacaatttcttcttttccacccaccttctgaaatttcattgtgatgtatcttggtgtgga--tgttttcatctactatagtaaaaacttggttggggtcattacaagttaaatttttgtctgtaaacttgaagaca-ttttttttattttaaatcatttctatctttccatcctttcagaatttgtatcattaagttgctggaaatctttaattgatagcctagtatttgtatagttcttccgactttcttggcattgcttttccatttttaatatttagtggtagtacaaatttgctcttccaactcatctattgaattacttatttaaatgatcactttttgatttccaagagtgctttgtggttctctgattgtatataattttatataatcctattcatcatttataaatgccatatTAATATATGGCATTAATATATCTTTTAGGTAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     275423 1800 -    383796 aaatccattgtctgattccatgtctccctccaactactg-ccccatttctctgacacttcttatagaataattcctGA-------GTCTCATGATGTTTTTTAAAtatcaaatggatttatggacagtgtttcaaaagtcaaatacttctacaaggcttgttgtaaacacagatgtccccagtctttcatgtacaccatttcctgaatcccagaggcaatctattttacttaacttgcctaa-tttttttactgtt-acatctgtgcctctaaatagtgtgttatagtgctgttttg-tttttcactcttatgtatcatGCTTAGTGGATAACTCCCTttcacatatccctgtcctctcaatatagttattctacaattttgcttagctgggcgttcactatttgtattattattatgaccacggaaatgctattcagaactagactaggaaatgcta--------------------------------------------------ttcacaaggattattttcctttgttgaactgactttttattctccctggaattagtaaatattttgtcccttcatgtgctcaatttctgttacactcattataaaatctcttccaaattt-----ccccccagggcgtctgctatagtttgaatgtgtcccctaaagttcatgtattggaaacttgatccccaatgtggtcatattggaaagtaaagcctaatagaagcagtctgagtcatgaggactctgccctcatgaataaattaatatcattagtgtgggagtgggcccacaataatgagattgtcctctctcttgcccttgacccatttgccatgtgaagacacagcaaggaggccctttccaaatgctggtggcttgatcttggacttcccagccttcagaactgaaaaaacaaatttctgttattcacaactgacccagactatggcattctgttatagcagcataaatgaactaaggcggtctccatgaatacatacaaccacgtcccatattctaccaacctcatctttatgaagacacttccctcagtcctgccacacgtggactggcgcatgcacatctgggctgacttccaaga---tcttcacctcatcctgggcatccctctgcctgtctcttgtgctggctctcctgttgcctggatcccatgtgtcccctttttttattttctccattatttttgtttctcatttcatccagcagta-tcctaagggaacac-aaaagtaaaatttgaaaccctaagcttctggaaatatctttatgctaccctagcacttattccaacctggacttggtatagaattctgtgttgaaaacatttttcctagggatttccatgacattttatcaatattttttagtttccaatgttgtttttcttgccttttgatgtttttagaatttcttattttccacccaccatctaaaatttcattgtgatgtatcttggtgtggg--tgttttcatctactatagtaagaacttggttggggtcattacaagttaaatttttgtctgtaaacttgaag--c-ttttttttattttaaatcatttctatctttccatcctttcagaatttgtatcattaggttgctggaaatcttggattgatagcctagtatttgtatagttcttctgtctttcttgacattgcttttccatttttaatatttagtggtagtacaaatttgctcttccaactcatctattaaattacttatttaaatgatcagtttttgatttccaagagtgctttttggttctctgattgtatataattttatataatcctattcatcatttgtaaatgccatat-----------ATTATTATATATTTTAGGTAT
i aotNan1.NW_018496904v1   I 20 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464    5 +  18854210 I
e colAng1.NW_012115577v1     172277    0 -   1829203 C
e chlSab2.chr17            29535032    0 -  71996105 C

a score=6351827.000000
s hg38.chr6_GL000254v2_alt  1379814 852 +   4827813 taTTGAGA------------ATAGTGGTAGTGGACCTGTT--AGATCTCCTGGTTATCTGCTTTCATGGTACCATGAACTTTTCTTCACCACACTTAGCTCAGCAGTAATTTTATATTTCTCTTTGTAAGTTCTGCTAAATGTGCATCTCCTTCATGACAGTGCAAACATCAAATTGCCAGCATCTTACTTTTGCTCTTCACTGTATCTTCAGGGTCTAGTAGATCACATGATTCATCAGAGGACTTGAAATACATGCTGAATGAGGAAATATAAGTGTGGTTAGGCAGGGAAATCAGACTTCCTTGATCAATTGCCCCTTGATGTTCTCCTGAGCACTGTATCTCATGACCTCCTGTCATAGAACATTCAGGGACATTGAAAGAGTTCACTGGCATGGGATACAGCGTCATATCCACCACCAGATGGACAGGGAATCAGTGAAAGATGATTCCATTAAGAGAAAATTCCCTGGGTCCACTCCACCCCCACCACCTGcttaacctctctgagtctccctttccctgtctatacaaagatatcacatatcgggcttctcatgggtttgcattgaagatcaaatttgactctctcagtaaaacacatggtattataccttgaggtatattaagtgttcTGCTACTCATAGCTACTAtccctatattgattacagcatttggattgtttcaatcattttgcttttataaaccaaaattcaagaaacatccttgaacatatattttttagaatgtgtgcagttatcttcttaggaaaaa-ttcttgaaagagaaatatatgcattgaaatgtaagtccatttatattgttaacatgtttcgcaaaagtcccctctagaaatttataccCCA
s panTro5.chr6             30253203 849 + 175400573 taTTGAGA------------ATAGTGGTAGTGGACCTGTT--AGATCTCCTGGTTATCTGCTTTCATGGTACCATGAACTTTTCTTCACCACACTTAGCTCAGCAGTAATTTTATATTTCTCTTTGTAAGTTCTGCTAAATGTGCATCTCCTTCATGACAGTGCAAACATCAAATTGCCAGCATCTTACTTTTGCTCTTCACTGTATCTTCAGGGTCTAGTAGATCACATAATTCATCAGAGGACTTGAAATACATGCTGAATGAGGAAATATAAGTGTGGTTAGGCAGGGAAGTCAGACTTCCTTGATCAATTGCCCCTTGATGTTCTCCTGAGCACTGTATCTCATGACCTCCTGTCATAGAACATTCAGGGACATTGAAAGAGTTCACTGGCATGGGATACAGCGTCATATCCACCACCAGATGGACAGGGAATCAGTGAAAGATGATTCCATTAAGAGAAAATTCCCTGGGTCCACTCCACCCCCACCACCTGcttaacctctctgagtctccctttccctgtctatacaaagatatcacatattgggcttctcatgggtttgcactgaagatcaaatTTGACTCTCTCAGTAAAACACATGGTATTATATCTTGAGGTATATTAAGTGTTCTGCTACTCATAGCTACTAtccctatattgattacagcatttggattgtttccatcattttgcttttataaaccaaaattcaagaaacatccttgaacatatattttttagaatgtgtgcagtta---tcttaggaaaaa-ttcttgaaagagtaatatatgcattgaaatgtaagtccatttatattgttaacatgtttcgcaaaagtcccctctagaaatttataccCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30483726 852 + 173848474 taTTGAGA------------ATAGTGGTAGTGGACCTGTT--AGATCTCCTGGTTATCTGCTTTCATGGTACCATGAACTTTTCTTCACCACACTTAGCTCAGCAGTAATTTTATATTTCTCTTTGTAAGTTCTGCTAAATGTGCATCTCCTTCATGACAGTGCAAACATCAAATTGCCAGCATCTTACTTTTGCTCTTCACTGTATCTTCAGGGTCTAGTAGATCACATGATTCATCAGAGGACTTGAAATACATGCTGAATGAGGAAATATAAGTGTGGTTAGGCAGGGAAGTCAGACTTCCTTGATCAATTGCCCCTTGATGTTCTCCTGAGCACTGTATCTCATGACCTCCTGTCATAGAACATTCAGGGACATTGAAAGAGTTCACTGGCATGGGATACAGCGTCATATCCACCACCAGATGGACAGGGAATCAGTGAAAGATGATTCCATTAAGAGAAAATTCCCTGGGTCCACTCCACCCCCACCACCTGcttaacctctctgagtctccctttccctgtctatacaaagatatcacatattgggcttctcatgggtttgcactgaagatcaaatTTGACTCTCTCAGTAAAACACATGGTATTATATCTTGAGGTATATTAAGTGTTCTGCTACTCATAGCTactatccctatattgattacagcatttggattgtttccatcattttgcttttataaaccaaaattcaagaaacatccttgaacatatattttttagaatgtgtgcggttatcttcttaggaaaaa-ttcttgaaagagtaatatatgcattgaaatgtaagtccatttatattgttaacatgtttcgcaaaagtcccctctagaaatttatacccca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     190350 851 +   2037526 taTTGAGAATAGTGGTAGTGATAGTGGTAGTGGACCTGTT--AGATCTCCTGGTTATCTGCTTTCATGGTACCATGAACTTTTCTTCACCACACTTAGCTCAGCAGTAATTTTATATTTCTCTTTGTAAGTTCTGCTAAATGTGCATCTCCTTCATGACAGTGCAAACATCAAATTGCCAGCATCTTACTTTTGCTCTTCACTGTATCTTCAGGGTCTAGTAGATCACATGATTCATCAGAGGACTTGAAATACATGCTGAATGAGGAAATATAAGTGTGGTTAGGCAGGGAAGTCAGACTTCCTTGATCGATTGCCCCTTGATGTTCTCCTGAGCACTGCATCTCATGACCTCCTGTCATAGAACATTCAGGGACATTGAAAGAGTTCACTGGCATGGGATACAGCGTCATATCCACCACCAGATGGACAGGGAATCAGTGAAAGATGATTCCATTAAGAGAAAATTCCCAGGGTCCACTCCACCCCCACCACCTGCTTAACCTCTCTGAGTCTCCCTTTCCCTGTCTATACAAAGATATCACATATTGGGCTTCTCATGGGTTTGCA-------------TTGACTCTCTCAGTAAAACACATGGTATTATACCTTGAGGTATATTAAGTGTTCTGCTACTCATAGCTActatccctatattgattacagcatttggattgtttccatcattttgcttttataaaccaaaattcaagaaacatccttgaacatatattttttagaatgtgtgcggttatcttcttaggaaaaa-ttcttgaaagagaaatatatgcattgaaatgtaagtccatttatattgttaacatgtttcgcaaaagtcccctctagaaatttataccCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74862675 865 + 122973662 taTTGAGAATAGTGGTAGTGATAGTGGTAGTAGACCTGTT--AGACCTCCTGGTTATCTCCTTTCATGGTACCATGAACTTTTCTTCACCACACTTAGCTCAGCAGTAATTTTATATTTCTCTTTGTAAGTTCTGCTAAATGTGCATCTCCTTCATGACAGTGCAAACATCAAATTGCCAGCATCTTACTTTTGCTTTTCACTGTATCTTCAGGGTCTAGTAGATCACATGATTCATCAGAGGACTTGAAATACAGGCTGAATGAGGAAATATAAGTGTGGTTAGGCAGGGAAGTCAGACTTCCTTGATCAATTGCCCCTTGATGTTCTCCTGAGCACTGCATCTCATGACCTCCTGTCACAGAACATTCAGGGACACTGAAAGAGTTCACTGGCATGGGATACAGAGTCATATCCACCACCAGATGGACAGGGAATCAATGAAAGATGATTCCATTAAGAGAAAATTCCCTGGGTCCACTCCACCCCCACCACCTGcttaacctctctgagtctccctttccctgtctatacaaagatatcacatattgggtttctcgtgggtttgcattgaagatcaaatttgactctctcagtaaaacacatggtattatactttgaggtatattaagtgttcCGCTACTCATAGCTactatccctatattgattacagcatttggattgttcctatcattttgcttttataaaccaaaattcaagaaacatccttgaacatatattttttagaatgtgtgtggttatcttcttaggaaaaatttcttgaaagagaaatatatgcattgaaatataagtccatttatattgttaacatgtgtcgcaaaagtcccctctagaaaTTTATATCCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30733934 854 + 172585720 TATTAGGT--------ATTAATGGTGGCAGTGGACCTGTT--AGATCTCCTGGTTATCTGCTTTCATGATACCATGAACTTTTCTTCACCACACTTAGCTCAGCAGTAATTTTATATTTATCTTTGTAAGTTCTGCTAAATGTGCATCTCCTTCACGACAGTGCAAACATCAAATTGCCAGCATCCTACTTTTGCTCTTTACTGTATCTTCATGGTCTAGTAGATCACATGATTCATCAGAGGTCTTGAAATACATGCCGGATGAGGAAATGTAAGTGTGGTTAGGCAGGGAATTCACACTTCTTTGATGAACT-CCCCTTGATGTTCTCCCGAGCAATGCATCTCATGACCTCCTGTCATAGAACATTCAGGGACATTGAAAGAGTTAACTGTCATGGGATACAGAGTCATATCCACCACCAGATGGACAGGGAATCAATGAACGATGATTCCATTAAGAGAAAATTCCCTGGGTCCACTCCACCTCCACCACCTGCTTAACCTCTCTGAGTCTCCCTTTTCCTGTCTATACAAAGATATCACATATTGAGTTTCCCGTGGGTTTGCGTTGA-GGTCAAATTTGACTCTCTCAGTAAAAAACATGGTATCATACCCTGAGGTATATTAAGCATTCTGCTACTCATAGCTACTATCCCTATATTGATTACAGCACTTGGATTGTTTACATCATTTTGCTTTTATAAACCAAAATTCAAAAAACATTCTTGAACATATATTTTTTAGAATGTGTGTTGTTATCTTCTTAGGAAAAA-TTCTTGAAAGAGAAATATCTGCATTGAAATGTAAGCCCATTTATATTGTTAACATGTTTTGCAAATGTCCCCTCTAGAAATTTATACCCCA
i rheMac8.chr4             I 33 C 0
s macFas5.chr4             30030463 856 - 170955103 tattaggt--------attaATGATGGCAGTGGACCTGTT--AGATCTCCTGGTTATCTGCTTTCATGATACCACGAACTTTTCTTCACCACACTTAGCTCAGCAGTAATTTTATATTTATCTTTGTAAGTTCTGCTAAATGTGCATCTCCTTCACAACAGTGCAAACATCAAATTGCCAGCATCCAACTTTTGCTCTTCACTGTATCTTCATGGTCTAGTAGATCACATGATTCATCACAGGTCTTGAAATACATGCTGGATGAGGAAATATAAGTGTGGTTAGGCAGGGAATTCAGACTTCCTTGATGAACTGCCCCTTGATGTTCTCCTGAGCAATGCATCTCATGACCTCCTGTCATAGAACATTCAGGGACACTGAAAGAGTTAACTGGCATGGGATACAGAGTCATATCCACCACCAGATGGACAGGGAATCAATGAAAGATGATTCCATTAAGAGAAAATTCCCTGGGTCCACTCCACCTCCACCACCTacttaacctctctgagtctcccttttcctgtctatacaaagatatcacatatcgggtttcccgtgggtttgcattgagggtcaaatTTGACTCTCTCAGTAAAAAACATGGTATCATACCCAGAGGTATATTAAGTGTTCCGCTACTTATAGCTactatccctatattgattacagcacttggattgtttccatcattttgcttttataaaccaaaattcaaaaaacactcttgaacatatattttttagaatgtgtgttgttatcttcttaggaaaaa-ttcttgaaagagaaatatctgcattgaaatgtaagcccatttatattgttaacatgttttgcaaacgtcccctctagaaatttatgcccca
i macFas5.chr4             I 32 C 0
s macNem1.NW_012012100v1     265979 854 +   1495729 TATTAGGT--------ATTAATGGTGGCAGTGGACCTGTT--AGATCTCCTGGTTATCTGCTTTCATGATACCATGAACTTTTCTTCACCACACTTAGCTCAGCAGTAATTTTATATTTATCTTTGTAAGTTCTGCTAAATGTGCATCTCCTTCACGACAGTGCAAACATCAAACTGCCAGCATCCTACTTTTGCTCTTTACTGTATCTTCATGGTCTAGTAGATCACATGATTCATCAGAGGTCTTGAAATACATGCCAGATGAGGAAATGTAAGTGTGGTTAGGCAGGGAATTCACACTTCTTTGATGAACT-CCCCTTGATGTTCTCCCGAGCAATGCATCTCATGACCTCCTGTCATAGAACATTCAGGGACATTGAAAGAGTTAACTGTCATGGGATACAGAGTCATATCCACCACCAGATGGACAGGGAATCAATGAACGATGATTCCATTAAGAGAAAATTCCCTGGGTCCACTCCACCTCCACCATCTGcttaacctctctgagtctcccttttcctgtctatacaaagatatcagatattgagtttcccgtgggtttgcattga-ggtcaaatttgactctctcagtaaaaaacatggtatcataccctgaggtatattaagcgttcTGCTACTCATAGCTACTATCCCTATATTGATTACAGCACTTGGATTGTTTCCATCATTTTGCTTTTATAAACCAAAATTCAAAAAACATTCTTGAACATATATTTTTTAGAATGTGTGTTGTTATCTTCTTAGGAAAAA-TTCTTGAAAGAGAAATATCTGCATTGAAATGTAAGCCCATTTATATTGTTAACATGTTTTGCAAATGTCCCCTCTAGAAATTTATACCCCA
i macNem1.NW_012012100v1   I 33 C 0
s cerAty1.NW_012002535v1     374942 856 -    863181 TATTAGGT--------ATTAATGATGGCAGTGGACCTGTT--AGATCTCCTGGTTATCTGCTTTCATGATACCACGAACTTTTCTTCACCACACTTAGCTCAGCAGTAATTTTATATTTATCTTTGTAAGTTCTGCTAAATGTGCATCTCCTTCACAACAGTGCAAACATCAAATTGCCAGCATCCAACTTTTGCTCTTCACTGTATCTTCATGGTCTAGTAGATCACATGATTCATCACAGGTCTTGAAATACATGCTGGATGAGGAAATATAAGTGTGGTTAGGCAGGGAATTCAGACTTCCTTGATGAACTGCCCCTTGATGTTCTCCCGAGCAATGCATCTCATGACCTCCTGTCATAGAACATTCAGGGACATTGAAAGAGTTAATTGGCATGGGATACAGAGTCATATCCACCACCAGATGGACAGGGAATCAATGGAAGATGATTCCATTAAGAGAAAATTCCCTGGGTCCACTCCACCTCCACCACCTacttaacctctctgagtctcccttttcctgtctatacaaagatatcacatatcgggtttcccgtgggtttgcattgagggtcaaatTTGACTCTCTCAGTAAAAAACATGGTATCATACCCAGAGGTATATTAAGTGTTCCGCTACTTATAGCTactatccctatattgattacagcacttggattgtttccatcattttgcttttataaaccaaaattcaaaaaacactcttgaacatatattttttagaatgtgtgttgttatcttcttaggaaaaa-ttcttgaaagagaaatatctgcattgaaatgtaagcccatttatattgttaacatgttttgcaaacgtcccctctagaaatttatgcccca
i cerAty1.NW_012002535v1   I 16 C 0
s manLeu1.NW_012107142v1     201171 854 -    735854 TATTAGGT--------ATTAATGGTGGCAGTGGACCTGTT--AGATCTCCTGGTTATCTACTTTCATGATACCATGAACTTTTCTTCACCACACTTAGCTCAGCAGTAATTTTATATTTATCTTTGTAAGTTCTGCTAAATGTGCATCTCCTTCATGACAGTGCAAACATCAAATTGCCAGCATCCTACTTTTGCTCTTCACTGTATCTTCATGGTCTAGTAGATCACATGATTCATCAGAGGTCTTGAAATACATGCCGGATGAGGAAATGTAAGTGTGGTTAGGCAGGGAATTCACACTTCTTTGATGAACT-CCCCTTGATGTTCTCCCAAGCAATGCATCTCATGACCTCCTGTCATAGAACATTCAGGGACATTGAAAGAGTTAACTGGCATGGGATACAAAGTCATATCCACCACCAGATGGACAGGGAATCAATGAAAGATGATTCCATTAAGAGAAAATTCCCTGGGTCCACTCCACCTCCACCACCTGcttaacctctctgagtctcccttttcctgtctatacaaagatatcacatattgagtttcccgtgggtttgcgttga-ggtcaaatTTGACTCTCTCAGTAAAAAACATGGTATCATACCCTGAGGTATATTAAGCATTCCGCTACTCATAGCTACTATCCCTATATTGATTACAGcacttggattgtttccatcattttgcttttataaaccaaaattcaaaaaacattcttgaacatatattttttagaatgtgtgttgttatcttcttaggaaaaa-ttcttgaaagagaaatatctgtattgaaatgtaagcccatttatattgttaacatgttttgcaaatgtcccctctagaaatttatacccca
i manLeu1.NW_012107142v1   I 1200 C 0
s calJac3.chr4             30339970 848 + 171630274 taTTGAGA------------ATAGTGGTACTGCACCTGTT--AGAT---CTGGTTATCTGCTTTCATGATATCATGAACTTTTCTTCACCACACTTAGCTTAGTAGTAATTTTATATTTATCTTTGTATGTTCTGCTAAATGTGCATCTCCTTCATGACAGTGCAAACATCAAATTGCCAGCATCTTACTTTTGCTCTTCACTGTATCTTCAGTGTTTAGTAGATCACATGGTTCATTAGAGGCCTCAAAATACATGCTGGATGAGGACATGCAAGTGTGGTTGAGCAGGAAAGTCAGACTTCCTTGATGAACTGCCCCTTGATGTTCTCCTGAGCACTGAATCTCATGACCTCCTGTCATAGAACATTTAGGGACATTGAAAGAGTTCACTGGCATGGGATACAGAGTCATATCCACCACCAGATGGACAGGGAATCAATGAAAGATGATTGCATTGAGAGAAAATTCCCTGGGCCCACTCCAGCTCCACCACCtgcttcacctctctgagtctccctttccctgtctatacaaaggtatcacatactgggtttcccatggatttgctttgaggatcaaattttactttctcagtaaaacacatggtattataccttggggtatactaagtgttcCACTACTCATAGCTactatccctatattgattatagcatttgggttgtttccatcattttgaatttgtaaaccaaaattcaagaaacattcttgaacatatattttttaaaatgtgtgtggttatcttcttaggaaaaa-ttcttgaaagggaaatatctgcattgaaatgtaagcccatttatattattaacatgttttgcaaaagtcccc-ttaaaaatttatcctcca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           162222 841 +    515838 taTTGAGA------------ATAGTGGTAGTGCCCCTGTT--AGATCTCCTGGTTATCTGCTTTCATGATACCATGAACCTTTCTTCACCACACTTAGCTTAGTAGTAATTTTATATTTATCTTTGTATGTTCTGCTAAATGTGCATCTCCTTCAGGACAGTGAAAACATCAAATTGCCAGCATCTTACTTTTGTTCTTCACTGTATCTTTAGTGTTTAGTAAATCACATGGTTCATTAGAGGCCTCAAAATACATGCTGGATGAGGAAATGCAAGTGTGGTTAAGCAGGAAAGTCAGACTTCCTTGATGAACTGTCCCTTGATGTTCTCCTGAGCACCACATCGCATGACCTCCTGTCATAGAACATTCAGGGACATTGAAAGAGTTCACTGGCATGGGATACAGAGTCATATCCACCACCAGATGGACAGGGAATCAATGAAAGATGATTGCATTGAGAGAAAATTCCCTGGGTCCATTGCAGCTCCACCACCTGCTTCAC----------CTCACTTTCCCTGTCTATACAAAGGTATCACGTACTGGGATTCCCATGGGTTTGCTTTAAGGATCAAATTTGACTCTCTCAGTAAAACACATGGTATTATACCTTGGGGTATATTAAGTGTTCCATTACTCATAGCTACtatccctatactgattatagcatttgggttgtttccatcattttgattttataaaccaaaattcaagaaacattcttgaacatgtattttttagaatgtgtatagttatcttcttaggaaaaa-ttcttg-aagggaaatatctgcattgcaatgtaagcccatttatattattaacatgttttgcaaaagtcccctttagaaatttatacatca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     798038 848 -   1771730 CATTGAGA------------ACAGTGATACTGCACCTGTT--AGATCTCCTGGTTATCTGCTTTCATGATACCATGAACTTTTCTTCACCGCAATTAGCTTAGTAGTAATTTTACATTTATCTTTGTATGTTCTGCTAAATGTGCATCTCCTTCATAACAGTGCAAACATCAAATTGCCAGCATCTTACttttgctcttcactgtatctttagtgtttag---atcacatggttcattagagggctcaaaatacgtgctggatgaggaaatGCAAGTGTGGCTGAGCAGGAAAGTCAGACTTCCTTGATGAACTGCCCCTTGATGTTCTCCTGAGCACTGCATCTCATGACCTCCTGTCGTAGAACATTCAGGGACATTGAAAGAGTTCATTGGCATGGGATACAGAGTCATATCAACCACCAGATGGAGAGGGAATCAATGAAAGATGATTTCATTGACAGAAAATTCCCTGGGTCCACTGCAGCTCCACCACCTGcttcacctctctgagtctccctttccctctctatacaaaggtgtcacatactgggtttcccatgggtttgctttgaggatcaaatttgactctctcagtaaaacacatgatattataccttgcggtatattaagtgttccattactcatagctactatCCCTAAATTGATTATAGcatttgggttgtttccatcattttgattttataaaccaaaattcaagaaacattcttgaacatatattttttagaatatgtgtggttatcttcttaggaaaaa-ttcttgaaagggaaatatctgcattgaaatgtaag-ccagttatgctattaatatgttttgcaaaaatcccctttagaaatttatactcca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     277223 853 -    383796 TATTGAGA------------ATAGTGGTAGTTCACCTGTTAGAGATCTCCTGGTTATCTGCTTTCATGTTACCATGAACTTTTCTTCACCACACTTAGCTTAGTAGTAATTTTATATTTATCTTTGTATGTTCTGCTAAATGTGCATCTCCTTCATGACAGTGCAAACATCAAATTGCCAGCATCTTACTTTTGCTCTTCACTGTATCATCAGTGTTTATTAGATCACATGTTTCATTAGGGGCCTCAAAATACATGCTGGATGAGGAAATGCAAGTGTGGTTGAGCAGTAAAGTCAGACTTCCTTGATGAACTGCCCCTTGATGTTCTCCTGAGCACTGCATCTCATTACCTCCTGTCATTGAACATTCAGGGACACTGAAAGAGTTCACTGGCATGGGGTACAGAGTCATATCCACCACCAGATGGACAGGGAATCAATGAAAGATGATTGCATTGAGAGAAAATTCCCTGAGTCCACTGCAGCTCCACCACCTGcttcacctctctgagtctccctttccctgtctgtacaaaggtatcacatgctgggtttcccatgggtttg-tttgaggatcaaatttgactctctcagtaaaacacatggtattataccttggggtatattaagtgttccattactcatagctTctatccctatattgattatagcatttgggttgtttccatcattttgattttataaaccaaaattcaagaaacattcttgaacatatattttttagaatgtgtgtggttatcttcttaggaaaaa-ttcttgaaagggaaatatctgcattaaaacgtaagcccatttatattattaacatgttttgcaaaagtcccctttagaaatttatactcca
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I
e colAng1.NW_012115577v1     172277   0 -   1829203 C
e chlSab2.chr17            29535032   0 -  71996105 C

a score=5500.000000
s hg38.chr6_GL000254v2_alt  1380666 1 +   4827813 G
s panTro5.chr6             30254052 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30484578 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     191201 1 +   2037526 G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74863540 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30031319 1 - 170955103 g
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     266833 1 +   1495729 G
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     375798 1 -    863181 g
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     202025 1 -    735854 g
i manLeu1.NW_012107142v1   C 0 C 0
s saiBol1.JH378341           163063 1 +    515838 g
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     798886 1 -   1771730 g
i cebCap1.NW_016107755v1   C 0 I 1
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464 5 +  18854210 I
e aotNan1.NW_018496904v1     278076 0 -    383796 C
e calJac3.chr4             30340818 0 + 171630274 C
e colAng1.NW_012115577v1     172277 0 -   1829203 C
e chlSab2.chr17            29535032 0 -  71996105 C
e rheMac8.chr4             30734788 0 + 172585720 C

a score=-2593.000000
s hg38.chr6_GL000254v2_alt  1380667 1 +   4827813 -T
s panTro5.chr6             30254053 1 + 175400573 -T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30484579 1 + 173848474 -t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     191202 1 +   2037526 -T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74863541 1 + 122973662 -A
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30031320 1 - 170955103 -t
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     375799 1 -    863181 -t
i cerAty1.NW_012002535v1   C 0 I 592
s saiBol1.JH378341           163064 1 +    515838 a-
i saiBol1.JH378341         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464 5 +  18854210 I
e aotNan1.NW_018496904v1     278076 0 -    383796 C
e cebCap1.NW_016107755v1     798887 1 -   1771730 I
e calJac3.chr4             30340818 0 + 171630274 C
e colAng1.NW_012115577v1     172277 0 -   1829203 C
e manLeu1.NW_012107142v1     202026 0 -    735854 C
e chlSab2.chr17            29535032 0 -  71996105 C
e macNem1.NW_012012100v1     266834 0 +   1495729 C
e rheMac8.chr4             30734788 0 + 172585720 C

a score=-1221.000000
s hg38.chr6_GL000254v2_alt  1380668 3 +   4827813 -GTT
s panTro5.chr6             30254054 3 + 175400573 -GTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30484580 3 + 173848474 -gtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     191203 3 +   2037526 -GTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74863542 3 + 122973662 -Att
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30031321 2 - 170955103 --tt
i macFas5.chr4             C 0 I 1
s saiBol1.JH378341           163065 3 +    515838 aat-
i saiBol1.JH378341         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464 5 +  18854210 I
e aotNan1.NW_018496904v1     278076 0 -    383796 C
e cebCap1.NW_016107755v1     798887 1 -   1771730 I
e calJac3.chr4             30340818 0 + 171630274 C
e colAng1.NW_012115577v1     172277 0 -   1829203 C
e manLeu1.NW_012107142v1     202026 0 -    735854 C
e chlSab2.chr17            29535032 0 -  71996105 C
e cerAty1.NW_012002535v1     375800 592 -    863181 I
e macNem1.NW_012012100v1     266834 0 +   1495729 C
e rheMac8.chr4             30734788 0 + 172585720 C

a score=5460.000000
s hg38.chr6_GL000254v2_alt  1380671 4 +   4827813 tttt
s panTro5.chr6             30254057 4 + 175400573 tttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30484583 4 + 173848474 tttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     191206 4 +   2037526 Tttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74863545 4 + 122973662 tttt
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378341           163068 4 +    515838 tttt
i saiBol1.JH378341         C 0 I 107
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464 5 +  18854210 I
e aotNan1.NW_018496904v1     278076 0 -    383796 C
e cebCap1.NW_016107755v1     798887 1 -   1771730 I
e calJac3.chr4             30340818 0 + 171630274 C
e colAng1.NW_012115577v1     172277 0 -   1829203 C
e manLeu1.NW_012107142v1     202026 0 -    735854 C
e chlSab2.chr17            29535032 0 -  71996105 C
e cerAty1.NW_012002535v1     375800 592 -    863181 I
e macNem1.NW_012012100v1     266834 0 +   1495729 C
e macFas5.chr4             30031323 1 - 170955103 I
e rheMac8.chr4             30734788 0 + 172585720 C

a score=242709.000000
s hg38.chr6_GL000254v2_alt  1380675 282 +   4827813 gttgttgttttgttttgttttgtttttgagacagagtcttgctctgtttcccaggctggagtgcggtggcacgatctcggctcactgtaagctccgcctcctgggttcacaccattctcctgcctcagcctcccaagtagctgggactacaggcgcctgccaccacgcccagctaatttttttttaatatttttagtagagacgggtttcaccgtgttagccaggatggtcttgatctcctgacctcgtgatccacctgcctcggcctcccaaagtATACCC--
s panTro5.chr6             30254061 282 + 175400573 gttgttgttttgttttgttttgtttttgagacggagtcttgctctgtttcccaggctggagtgcagtggcacgatctcggctcactgtaagctccgcctcctgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcctgccaccacgcccggctaatttttttttaatatttttagtagagacgggtttcaccgtgttacccaggatggtcttgatctcctgacctcgtgattcacctgcctcggcctcccaaagtATACCC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30484587 282 + 173848474 gttgttgttttgttttgttttgtttttgagacggagtcttgctctgtttcccaggctggagtgcagtggcacgatctcggctcactgtaagctccgcctcctgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcctgccaccacgtccggctaaattttttttaatatttttagtagagacgggtttcaccgtgttacccaggatggtcttgatctcctgacctcgtgattcacctgcctcggcctcccaaagtataccc--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     191210 280 +   2037526 gttgttgttttgttttgtcttgtttttgagacggagtcttgctctgtttcccaggctggagtgcagtggcacgatctcggctcactgtaagctccgcctcctgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcctgccaccacgcccggctaatttttttt--atatttttagtagagacgggtttcaccatgttagccaagatggtcttgatctcctgacctcgtgatccacctgcctcggcctcccaaagtATACCC--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74863549 277 + 122973662 -------ttttttttttttttttttttgagacagagtctcgctctgtttcctaggctggagtgcagtggcgcgatctcggctcactgcaagctctgcctcccaggttcacaccattctcctgcctcagcgtcccgagtagctgggactacaggcgcccaccaccatgcctggctaattttttttttatatttttagtagagacgggtttcaccgtgttagccaggatggtcttgatctcctgaccttgtgatccacccgccttggcctcccaaagtATACCCCA
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           163072 107 +    515838 I
e otoGar3.GL873550           213464   5 +  18854210 I
e aotNan1.NW_018496904v1     278076   0 -    383796 C
e cebCap1.NW_016107755v1     798887   1 -   1771730 I
e calJac3.chr4             30340818   0 + 171630274 C
e colAng1.NW_012115577v1     172277   0 -   1829203 C
e manLeu1.NW_012107142v1     202026   0 -    735854 C
e chlSab2.chr17            29535032   0 -  71996105 C
e cerAty1.NW_012002535v1     375800 592 -    863181 I
e macNem1.NW_012012100v1     266834   0 +   1495729 C
e macFas5.chr4             30031323   1 - 170955103 I
e rheMac8.chr4             30734788   0 + 172585720 C

a score=2800.000000
s hg38.chr6_GL000254v2_alt  1380957 1 +   4827813 G
s panTro5.chr6             30254343 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30484869 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     191490 1 +   2037526 G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74863826 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30734788 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s calJac3.chr4             30340818 1 + 171630274 g
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1     278076 1 -    383796 g
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           163072 107 +    515838 I
e otoGar3.GL873550           213464 5 +  18854210 I
e cebCap1.NW_016107755v1     798887 1 -   1771730 I
e colAng1.NW_012115577v1     172277 0 -   1829203 C
e manLeu1.NW_012107142v1     202026 0 -    735854 C
e chlSab2.chr17            29535032 0 -  71996105 C
e cerAty1.NW_012002535v1     375800 592 -    863181 I
e macNem1.NW_012012100v1     266834 0 +   1495729 C
e macFas5.chr4             30031323 1 - 170955103 I

a score=4095.000000
s hg38.chr6_GL000254v2_alt  1380958 1 +   4827813 T
s panTro5.chr6             30254344 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30484870 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     191491 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74863827 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30734789 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     266834 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s manLeu1.NW_012107142v1     202026 1 -    735854 t
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30340819 1 + 171630274 t
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1     278077 1 -    383796 t
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           163072 107 +    515838 I
e otoGar3.GL873550           213464 5 +  18854210 I
e cebCap1.NW_016107755v1     798887 1 -   1771730 I
e colAng1.NW_012115577v1     172277 0 -   1829203 C
e chlSab2.chr17            29535032 0 -  71996105 C
e cerAty1.NW_012002535v1     375800 592 -    863181 I
e macFas5.chr4             30031323 1 - 170955103 I

a score=15015.000000
s hg38.chr6_GL000254v2_alt  1380959 3 +   4827813 TTT
s panTro5.chr6             30254345 3 + 175400573 TTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30484871 3 + 173848474 ttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     191492 3 +   2037526 TTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74863828 3 + 122973662 TTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30734790 3 + 172585720 TTT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     266835 3 +   1495729 TTT
i macNem1.NW_012012100v1   C 0 C 0
s manLeu1.NW_012107142v1     202027 3 -    735854 ttt
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30340820 3 + 171630274 ttt
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     798888 3 -   1771730 ttt
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496904v1     278078 3 -    383796 ttt
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           163072 107 +    515838 I
e otoGar3.GL873550           213464 5 +  18854210 I
e colAng1.NW_012115577v1     172277 0 -   1829203 C
e chlSab2.chr17            29535032 0 -  71996105 C
e cerAty1.NW_012002535v1     375800 592 -    863181 I
e macFas5.chr4             30031323 1 - 170955103 I

a score=501209.000000
s hg38.chr6_GL000254v2_alt  1380962 89 +   4827813 TCATCAGCCTTCATGACAGTGTATTTTCCCTACCTCTGGATAATATGCTTATCATTTACTTTCACATATGCCAAACTGACAGattttaa
s panTro5.chr6             30254348 89 + 175400573 TCATCAGCCTTCATGACAGTGTATTTTCCCTACCTCTGGATAATATGCTTATCATTTACTTTCACATATGCCAAACTGACAGattttaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30484874 89 + 173848474 tcatcagccttcatgacagtgtattttccctacctctggataatatgcttatcatttactttcacatatgccaaactgacagattttaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     191495 89 +   2037526 TCATCAGCCTTCATGACAGTGTATTTTCCCTACCTCTGGATAATATGCTTATCATTTACTTTCACATATGCCAAACTGACAGattttaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74863831 89 + 122973662 TCATCAGCCTTTATGACAGTGTATTTTCCCTACCTCTGGATAATATGCTCATCATTTACTTTCACATATGCCAAACTGACAGattttaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30734793 89 + 172585720 TCATCAGCCTTTATGACAGCGTATTTTCCCTACCTCTGGCTAATATGCTCATCATTTACTTTCACATATTTCAAACTGACAGattttaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30031324 89 - 170955103 tcatcagcctttatgacagcgtattttccctacctctggctaataTGCTCATCATTTACTTTCACATATTTCAAACTGACAGattttaa
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     266838 89 +   1495729 TCATCAGACTTTATGACAGCGTATTTTCCCTACCTCTGGCTAATATGCTCATCATTTACTTTCACATATTTCAAACTGACAGATTTTAA
i macNem1.NW_012012100v1   C 0 C 0
s manLeu1.NW_012107142v1     202030 89 -    735854 tcatcagcctttatgacagcgtattttccctacCTCTGGCTAATATGCTCATCATTTACTTTCACATATTTCAAACTGACAGATTTTAA
i manLeu1.NW_012107142v1   C 0 I 1348
s calJac3.chr4             30340823 89 + 171630274 tcatcagcctgtatgacagtgtattttccctgcctctggctaatatgctcatcatttactttcacatttgccaaactgatagatTTTAA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     798891 89 -   1771730 tcatcagcctgtatgacagtgtattttccctacctctggctaatatgctcatcatttactttcacatttgccaaactgatagattttaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     278081 89 -    383796 tcatcagcctgtatgacagcgtattttccctacctctgactaatatgcccatcatttactttcacatttgccaaactgatagatTTTAa
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           163072 107 +    515838 I
e otoGar3.GL873550           213464  5 +  18854210 I
e colAng1.NW_012115577v1     172277  0 -   1829203 C
e chlSab2.chr17            29535032  0 -  71996105 C
e cerAty1.NW_012002535v1     375800 592 -    863181 I

a score=5005.000000
s hg38.chr6_GL000254v2_alt  1381051 1 +   4827813 t
s panTro5.chr6             30254437 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30484963 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     191584 1 +   2037526 t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74863920 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30734882 1 + 172585720 t
i rheMac8.chr4             C 0 I 506
s macFas5.chr4             30031413 1 - 170955103 t
i macFas5.chr4             C 0 I 567
s macNem1.NW_012012100v1     266927 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 I 502
s calJac3.chr4             30340912 1 + 171630274 T
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     798980 1 -   1771730 t
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     278170 1 -    383796 t
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           163072 107 +    515838 I
e otoGar3.GL873550           213464 5 +  18854210 I
e colAng1.NW_012115577v1     172277 0 -   1829203 C
e manLeu1.NW_012107142v1     202119 1348 -    735854 I
e chlSab2.chr17            29535032 0 -  71996105 C
e cerAty1.NW_012002535v1     375800 592 -    863181 I

a score=1117569.000000
s hg38.chr6_GL000254v2_alt  1381052 181 +   4827813 tttcattcgcatttctaatgtcatgttctcatttttcctcatattcattAATC--AGAGTATATTGTCTGATATTTGATTTATTCTTTCCCATATTGCTTTCTAATA----TTATTATTTTTCTATTGGGATG-----ACTT-AAAAATGTTGAATTTGACtaag-a----aaaaaagcagctcttgacttctgacac
s panTro5.chr6             30254438 188 + 175400573 tttcattcgcatttctaatgtcatgttctcatttttcctcatattcattAATCATAGAGTATATTGTCTGATATTTGATTTATTCTTTCCCATATTGCTTTCTAATA----TCATTATTTTTCTATTGGGATGTAGGTACTT-AAAAATGTTGAATTTGACtaag-a----aaaaaagcagctcttgacttctgacac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30484964 188 + 173848474 tttcattcgcatttctaatgtcatgttctcatttttcctcatattcattaatcatagagtatattgtctgatatttgaattattctttcccatattgctttctaata----tcattatttttctattgggatgtAGGTACTT-AAAAATGTTGAATTTGACtaag-a----aaaaaagcagctcttgacttctgacac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     191585 187 +   2037526 tttcattcgcatttctaatgtcatgttctca-ttttcCTCATATTCATTAATCATAGAGTATATTGTCTGATATTTGATTTATTCTTTCCCATATTGCTTTCTAATA----TTATTATTTTTCTATTGGGATGTAGGTACTT-AAAAATGTTGAATTTGACtaag-a----aaaaaagcagctcttgacttctgacac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74863921 184 + 122973662 tttcattcccatttctaatgtcatgttctcatttttcctcatattcattAATCATAGTGTATATTGTCTGATATTTGATTTATTCTTTCGCATATTGCTTTCTAATA----TTATTATTTTCCTATTGGGATGTAGGTACTT-AAAAATGTTGAATT----taag-a----aaaaaagcagctcttgacatctgacac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30735389 197 + 172585720 tttcattcccatttctaatgtcatgttctcatttttcctcatattcatGAATCATAGAGTATATTGTCTGATATTTGATTTATTCTTTTCCATGTTGCTTTCTAATATTCTTTATTATTTTCCAGTTGGGATGTAGGTACTTAAAAAATGTTGAATTTAACTAAG-gaaaaaaaaaagcagctcttgatatctgacat
i rheMac8.chr4             I 506 C 0
s macFas5.chr4             30031981 196 - 170955103 tttcattcccatttctaatgtcatgttctcatttttcctcatattcatGAATCATAGAGTATATTGTCTGATATTTGATTTATTCTTTTCCATATTGCTTTCTAATATTCTTTATTATTTTCCAGTTGGGATGTAAGTACTTTAAAAATGTTGAATTTAACtaag-g-aaaaaaaaagcagctcttgatatctgacat
i macFas5.chr4             I 567 C 0
s macNem1.NW_012012100v1     267430 196 +   1495729 tttCATTCCCATTTCTAATGTCATGTTCTCATTTTTCCTCATATTCATGAATCATAGAGTATATTGTCTGATATTTGATTTATTCTTTTCCATGTTGCTTTCTAATATTCTTTATTATTTTCCAGTTGGGATGTAGGTACTTAAAAAATGTTGAATTTAACtaag-g-aaaaaaaaagcagctcttgatatctgacat
i macNem1.NW_012012100v1   I 502 C 0
s cerAty1.NW_012002535v1     376392 196 -    863181 tttCATTCCCATTTCTAATGTCATGTTCTCATTTTTCCTCATATTCATGAATCATAGAGTATATTGTCTGATATTTGATTTATTCTTTTCCATATTGCTTTCTAATATTCTTTATTATTTTCCAGTTGGGATGTAAGTACTTTAAAAATGTTGAATTTAACtaag-g-aaaaaaaaagcagctcttgatatctgacat
i cerAty1.NW_012002535v1   I 592 C 0
s manLeu1.NW_012107142v1     203467 196 -    735854 tttCATTCCCATTTCTAATGTCATGTTCTCATTTTTCCTCATATTCATGAGTCATAGAGTATATTGTCTGATATTTGATTTATTCTTTTCCATGTTGCTTTCTAATATTCTTTATTATTTTCCAGTTGGGATGTAGGTACTTAAAAAATGTTTAATTTAACtaag-g-gaaaaaaaagcagctcttgatatctgacat
i manLeu1.NW_012107142v1   I 1348 C 0
s calJac3.chr4             30340913 186 + 171630274 TTTCATTCCCATTTCTAATTTCACATTCTCATTTTTCCTCACATTCATTAATCATAGAGTATATTGTCTGATATTTGGTGTATTCTTTTCCATATTGCTTTCTAGTATTCTTTATTATTCTCCAATTGGGATGTAGGTACTT-AAAAATGTTGAATTtaagaaagaa----aaaaaagcagctcttgacac-------
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     798981 190 -   1771730 tttcattcccatttctaatttcacgttctcatttttcctcatattcattaatcatagagtatattgtctgatatttgatttattcttttccatattgctttctaatattctttattattttccaattgggatgtaggtACTT-AAAAATGTTGAATTtaagaaag-a----aaaaaagcagctcttgacat--gacac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     278171 188 -    383796 tttcattcccatttctaatttcacattctcatttttcCTCATATTCGTCAATCATAGAGTATATTGTCTGATATTTGATTTATTCTTTTCCATATTGCTTTCTAATA-TCTTTATTATTTTCCAATTGGGATGTAGGTACTT-AAAAACGTTGAATTtaagaaa--a----aaaaaagcagctcttgacat--gacac
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           163072 107 +    515838 I
e otoGar3.GL873550           213464   5 +  18854210 I
e colAng1.NW_012115577v1     172277   0 -   1829203 C
e chlSab2.chr17            29535032   0 -  71996105 C

a score=4557030.000000
s hg38.chr6_GL000254v2_alt  1381233 643 +   4827813 tgacagtaggtttcagtactgttagaagctgtcctactgctcaacactaggccatattattcttttcttggacataaaccatattac---acaacatcagacaaggacactctgggaacatgataaaacaagacaaaacaggggcactacataatttagtataagcacagacaaaaaccaaggcactgtgtacctcacaaaataccaaacctctccccctgctggctaatatgagtgacggctgtttctttaccagccacaactttatccttgctctgctctgcatttattatgggtaagatttattgagacagtcgtagaaatgttcctgctttttgacaacaccccatctacagtcaacccctacctcgttagctctccccaaaaacatccactaaaagaccaaatcctatattgcattttttctaatatcctcacgctaagatggtgtgcattctctcttgtgacaatgagtaataaaccccagttgttcagctatagatgttcctggtggtctttggctgaaagacattgaAATATGCTACCTTTTGTCTTTCCAA--TTATTTATGTGTCTTTGAATTTGATCACAGGCATATGTTTGTATATTTGTGAGTCTG-----------------TGGTTGACATAGAGAAG--TTTTATTTTTTT
s panTro5.chr6             30254626 643 + 175400573 tgacagtaggtttcagtactgttagaagctgtcctactgctcaacactaggccatattattcttttcttggacataaaccatattac---acaacatcagacaaggacactctgggaacatgataaaacaagacaaaacaggggcactacataatttaggataagcacagacaaaaaccaaggcactgtgtacctcacaaaataccaaacctctccccctgctggctaatatgagtgacggctgtttctttaccaaccacaactttatccttgctctgctctgcatttattatgggtaagatttattgagacagtcatagaaatgttcctgctttttgacaacaccccatctacagtcaacccctacctcgttagctctccccaaaaacatccactaaaagaccaaatcctatattgcattttttctaatatcctcacgctaagatggtgtgcattctctcttgtgacaatgagtaataaaccccagttgttcagctatagatgttcctggtggtctttggctgaaagacattgaAATATGCTACCTTTTGTCTTTCCGA--TTATTTATGTGTCTTTGAATTTGATCACAGGCATATATTTGTATATTTGTGAGTCTG-----------------TGGTTGACATAGAGAAA--TTTTAGTTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30485152 643 + 173848474 tgacagtaggtttcagtactgttagaagctgtcctactgctcaacactaggccatattattcttttcttggagataaaccatattac---acaaaatcagacaaggacactctgggaacatgataaaacaagacaaaacaggggcactacataatttaggataagcacagacaaaaaccaaggcactgtgtacctcacaaaataccaaacctctccccctgctggctaatatgagtgacggctgtttctttaccaaccacaactttatccttgctctgctctgcatttattatgggtaagatttattgagacagtcgtagaaatgttcctgctttttgacaacaccccatctacagtcaacccctacctcgttagctctccccaaaaacatccactaaaagaccaaatcctatattgcattttttctaatatcctcacgctaagatggtgtgcattctctcttgtgacaatgagtaataaaccccagttgttcagctatagatgttcctggtggtctttggctgaaagacattgaAATATGCTACCTTTTGTCTTTCCGA--TTATTTATGTGTCTTTGAATTTGATCACAGGCATATATTTGTATATTTGTGAGTCTG-----------------TGGTTGACATAGAGAAA--TTTTATTTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     191772 629 +   2037526 tgacagtaggtttcagtactgttagaagctgtcctactgctcaacactaggccatattattcttttcttggacataaaccatattac---acaacatcagacaaggacactctgggaacatgataaaacaagacaaaacaggggcactacataatttagtataagcacagacaaaaaccaaggcactgtgtacctcacaaaataccaaacctctccccctgctggctaatatgagtgacggctgtttctttaccaaccacaactttatccttgctctgctctgcatttattatgggtaagatttattgagacagtcgtagaaatgttcctgctttttgacaaaaccccatctacagtcaacccctacctcgttagctctccccaaaaacatctactaaaagaccaaatcctatattgcattttttctaatatcctcacgctaagatggtgtgcattctctcttgtgacaatgagtaataaaccccagttgttcagctatagatgttcctggtggtctttggctgaaagacattgaAATATGCTACCTTTTGTCTTTCCGA--TTATTTATGTGTCTTTGAATTTGATCACAGGCATA--------------TGAGTCTG-----------------TGGTTGACATAGAGGAG--TTTTGTTTTTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74864105 641 + 122973662 tgacagtaggtttcactgctgttagaagctgtcctactgctcaacactaggccatattattcttttcttggacataaaccgtattac---aaaacatcagacaaggacactctgggaacatgataaaacaagacaaaacaggggcactacataattttgtataagcacagacaaaaaccaaggcactgtgcacctcacaaaataccaaacctctccccttgctggctaatatgagtgacggctgtttctttaccaaccacaactttatccttgctctgctctgcatttattatgggtaagatttattgagacagtcgtagaaatgttcctgcttcttgacaacacccaatctagagtgaacccctacctccttagctctccccaaaaacatccactcaaagaccaaatcctatattgcattttttctaatatcctcacgctaagatggtgtgcattctctcttgtgacaacgagtaataaaccccagttgttcggctatagatgttcctggtggtcttctgctgaaagacactgaAATACGCTACCTTTTGTCTTTCCGA--TTATTTATGTGTCTTTGAATTTGATCACAGGCATATGTTTGTATATTTGTGAGTTTG-----------------TGGTTGACATAGAGAAG--TTTT--TTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30735586 644 + 172585720 tgacagaaggtttcagtgctgttagaagctgtcctattgctcaccactaggccatattattcttttcctggacataaaccatattacaaaacaacattagacaaggacactctgggaacatgataaagcaagacaaaataggggcactatataatttagtgtaagcacagacaaaaaccaaggcactgtacaactcac-aaataccaaacctctccccctgctggctaatatgagtgatggctgtttctttaccaaccacaactttatccttgttctgctctgcatttattatgggtaagatttattgagacagtcataaaaatgttcctgcttcttgacaacaccaaatctaga-tgaactcctacttccttagctctccccaaatacatccactcaaagaccaaatcctatactgcattctttctaataccctcatgctaagatggtgtgcattctcttctgtggcaacaaat-ataaaccccagttgttcaactacaggtgttcctggtggtctttggctgagagacattgaAATATGCTACCTTTCGTCTTTCCAATTTTTTTTACATATCTTTAAATTTGATCACCGGCATATGTTTGTATATTTGTAAGTTTG-----------------TGGTTGAAATAGAGAAG--TTTTA-TTTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30032177 641 - 170955103 tgac---aggtttcagtgctgttagaagctgtcctattgctcaccactaggccatactactcttttcttggacataaaccatattacaaaacaacattagacaaggacactctaggaacataataaagcaagacaaaataggagcactatataattcagtgtaagcacagacaaaaaccaaggcactgtacaactcac-aaataccaaacctctccccctgctggctaatatgagtgatggctgtttctttaccaaccacaactttatccttgctctgctctgcatttattatgggtaagatttattgagacagtcataaaaatattcctgcttcttaataacaccaaatctagagtgaactcctacttccttagctctccccaaaaacatccactcaaagaccaaatcctatactgcattctttctaataccctcatgctaagatggtgtgcattctcttctgtggcagtgaat-ataaaccccagttgttcaactacaggtgttcctggtagtctttggctgagagacattgaAATATGCTACCTTTCATCTTTTCGA-TTTTTTTACATGTCTTTAAATTTGATCACCAGCATATGTTTGTATATTTGTAAGTTTG-----------------TGGTTGACATAGAGAAG--TTTTA-TTTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     267626 645 +   1495729 tgacagaaggtttcagtgctgttagaagctgtcctattgctcaccactaggccatattattcttttcctggacataaaccatattacaaaacaacattagacaaggacactctgggaacatgataaagcaagacaaaataggggcactatataatttagtgtaagcacagacaaaaaccaaggcactgtgcaactcacaaaataccaaacctctccccctgctggctaatatgagtgatggctgtttctttaccaaccacaactttatccttgctctgctctgcatttattatgggtaagatttattgagacagtcataaaaatgttcctgcttcttgacaacaccaaatctagagtgaactcctacttccttagctgtccccaaaaacatccactcaaagaccaaatcctatactgcattctttctaataccctcatgctaagatggtgtgcattctcttctgtggcaacaaat-ataaaccccagttgttcaactacaggtgttcctggtggtctttggctgagagacattgaAATATGCTACCTTTCGTCTTTCCAA-TTTTTTTACATGTCTTTAAATTTGATCACCGGCATATGTTTGTATATTTGTAAGTTTG-----------------TGGTTGAAATAGAGAAG--TTTTA-TTTTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     376588 641 -    863181 tgac---aggtttcagtgctgttagaagctgtcctattgctcaccactaggccatactactcttttcttggacataaaccatattacaaaacaacattagacaaggacactctaggaacataataaagcaagacaaaataggagcactatataatttagtgtaagcacagacaaaaaccaaggcactgtacaactcac-aaataccaaacctctccccctgctggctaatatgagtgatggctgtttctttaccaaccacaactttatccttgctctgctctgcatttattatgggtaagatttattgagacagtcataaaaatattcctgcttcttaataacaccaaatctagagtgaactcctacttccttagctctccccaaaaacatccactcaaagaccaaatcctatactgcattctttctaataccctcatgctaagatggtgtacattctcctctgtggcagtgaat-ataaaccccagttgttcaactacaggtgttcctggtagtctttggctgagagacattgaAATATGCTACCTTTCATCTTTCCGA-TTTTTTTACATGTCTTTAAATTTGATCACCAGCATATGTTTGTATATTTGTAAGTTTG-----------------TGGTTGACATAGAGAAG--TTTTA-TTTTTT
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     203663 645 -    735854 tgacagaaggcttcagtgctgttagaagctgtcctattgctcaccactaggccatattattcttttcctggacataaaccatattacaaaataacattagacaaggacactctgggaacatgataaagcaagacaaaataggggcactatataatttagtgtaagcacagacaaaaaccaaggcactgtgcaactcacaaaataccaaacctctccccctgctggctaatatgagtgatggctgtttcttcaccaaccacaactttatccttgttctgctctgcatttattatgggtaagatttattgagacagtcataaaaatgttcctgcttcttgacaacaccaaatctagagtgaactcctacttccttagctgtccccaaaaacatccactcaaagaccaaatcctatactgcattctttctaataccctcatgttaagatggtgtgcattctcttctgtggcaacaaat-ataaaccccagttgttcaactacaggtgtccctggtggtctttggctgaaagacattgaAATATGCTACCTTTCGTCTTTCCAA-TTTTTTTACATGTCTTTAAATTTGATCACCGGCATATGTTTGTATATTTGTAAGTTTG-----------------TGGTTGACATAGAGAAG--TTTTA-TTTTTT
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30341099 658 + 171630274 tgac---aggtttcagagctgttagaagctgtcctattagtcgccactaggccatattattttcttcttggacataaaccatattacaaagcaacaacggacaaggatactctgggaacatgataaagcaagacaaaataggagcactacataatttcatataagcacagacaaaaaccaaggcactgtgcaactcacaaagtatcaaacctctccccctgctggccaatatgagtgatggctgtttctttaccaaccacagctttatccttgctctgctctgcattcattgtgggtaagatttattgagaccgccacagaaatgttcctgcttcttgacgatacccaatctgtagcaaaaccctacctccttagcgctctccagaaatatcttctgtaagaccaaatcctgtattacattctttctaatatccccatgcttacatggtgtgcagtctc-cttttggcaatgagtaataaatcccggttgttcaactataggtgtttctggtggcctttggctgaaagacattgaAATATGCTACCTTTTGTAGTTCAGA--TTTTTTAAGTGTCTCTGAATTTGATCACCGGCATGTGTTTGTATACTTGTGAGTTTGACATAGAGAAGTTTTATTGGTTGACATAGAAAAG--TTTAA-TTTTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           163179 664 +    515838 tgacagtaggtttcagcgctgttagaagctgtcctattggtcgccactaggccatattattttcttcttggacataaaccatattacaaaacaacatcggacaaggatactctgggaacatgataaagcaagatgaaaaaggagcactacagaatttcatataagcacagacaaaaaccaaggcaccatgcaactcacaaaatatcaagcctctccccctgctggctaatatgagtgacagctctttctttaccaaccacaacttcatccttgctctgctctgcactcactgtgggtaagatttattcagacagtcatcgaaatgttcctgcttcttggcaatacccaacctgtagtgaaaccctacctccttagctctctccaaatatatcctctgtaagaccaaatcctgtattacattctttctaatatcctcatgcttacacggtgtgcagtctctcttttggcaatgagtaataaatcccagttgttcaactataggtgtttctggtggcctttggctgaaagacgttgaAATATGCTACCTTTTGTCATTCAGA--TTTTTTACGTGTCTTTGAATTTGATCACAGGCATATGTTAGTATATTTGTGAGTTTGACATAGAGAAGTTGTATTGGTTGACATACAGAAGtttttat-tttttt
i saiBol1.JH378341         I 107 I 2136
s cebCap1.NW_016107755v1     799171 662 -   1771730 tgacggtaggtttcagtgctgttagaagctgtcctattggtcgccactaggccatattattttatccttggacataaaccatattacaaaacaacaacggacaaggatactctgggaacatgataaagcaagacaaaataggagcactacgtaatttcatataagcacagacaaaaagcaaggcactgtgcaactcacgaagtatcaaacctctccccctgctggctgatatgagtgatggctgtttctttaccaaccacaactttatccttgctctgctctgcattcattgtgggtaagatttattgagacagtcacagaaatgttcctgcttcttgacaatacccaatctgtagtgaaaccctacctccttagctctctccaaaaatatcctctgtaagaccaaatcccatattacattctttctaatatcctcatgcttacatggtgtgcagtctctcttttggcaatgagcaataaatctcagttgttcaaatataggtgtttctggtggcctttggctgaaagacattgaAATATGCTACCTTTTGTCGTTCAGA--TTTTTTACGTGTCTTTGAATTTGATCAGAGGCATATGTCAGTATATTTGTGAGTTTGACATACAGAAGTTTTATTAGTTGACATAGAGAAG--TTTTA-TTTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     278359 660 -    383796 tgacagtaggtttcagtgctgttagaagctgtcctattggtcaccactaggccatattattttcttcttggacataaaccatattacaaaacaacatcggacaaggatactctgggaacatgataaagcaagacaaaataggagcactacataatttcatataagcacagacaaaaaccaaggtactgtgcaactcacaaaatatcaaatctctccccctgctggctaatatgagtgatggctgtttctttaccaaccacaactttatccttgctttgctctgcattcattgtgggtaagatttattgagacagtcatagaaatgttcctgcttcttgacaatacccaatctgtagtgaaaccctaccttcttagctatctccaaaaacatcctctgtaagaccaaatcctgtattacattctttctaatatcctcatgcttacatggtgtgcagtctctcttttggcaatgagtaataaatccccgttgttcaactataggtgtttctggtggcctttggctgaaagacgttg--ataTGCTACCTTTTGTCGTTCAGA--TTTTTTATGTGTCTTTGAATTTGATCACAGGCATATGTTTGTATATTTGTGAGTTTGACATAGAGATGTTTCATTGGTTGACACAGAAAAG--TTTAA-TTTTTT
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I
e colAng1.NW_012115577v1     172277   0 -   1829203 C
e chlSab2.chr17            29535032   0 -  71996105 C

a score=1418226.000000
s hg38.chr6_GL000254v2_alt  1381876 210 +   4827813 ATTTATGGCTTTTCATATTTGGGTCATGCTTACAGAATCCTTTTCTACCTCACAATTGTAAAACTTAACATCTATTTTCATCTAGGTACAGATGATATGAAGAGAGGGAAGTCCCAGAGTGAAGAGAAACACACAGATATGTTTGATTTGGGGAGAAAGCT---GGGGG-------------GAATGAGAAAGAAGCAAAGAGTTCTAAGGTGGAGTTTTAACATT
s panTro5.chr6             30255269 210 + 175400573 ATTTATGGCTTTTCATATTTGGGTCATGCTTACAGAATCCTTTTCTACCTCACAATTGTAAAACTTAACATCTATTTTCATCTAGGTACAGATGATATGAAGAGAGGGAAGTCCCAGAGTGAAGACAAACACACAGATATGTTTGATTTGGGGAGAAAGCT---GGGGG-------------GAATGAGCAAGAAGCAAAGAGTTCTAAGGTGGAGTTTTAACATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30485795 210 + 173848474 ATTTATGGCTTTTCATATTTGGGTCATGCTTACAGAATCCTTTTCTACCTCACAATTGTAAAACTTAACATCTATTTTCATCTAGGTACAGATGATATGAAGAGAGGGAAGTCCCAGAGTGAAGACAAACACACAGATATGTTTGATTTGGGGAGAAAGCT---GGGGG-------------GAATGAGCAAGAAGCAAAGAGTTCTAAGGTGGAGTTTTAACATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     192401 210 +   2037526 ATTTATGGCTTTTCATATTTGGGTCATGCTTACAGAATCCTTTTCTACCTCACAATTGTAAAACTTAACATCTATTTTCATCTAGGTACAGATGATATGAAGACAGGGAAGTCCCAGAGTGAAGAGAAACACACAGATATGTTTGATTTGGGGAGAAAGCT---GGGGG-------------GAATGAGCAAGAAGCAAAGAGTTCTAAGGTGGAGTTTTAACATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74864746 210 + 122973662 ATTTATGGCTTTTCATATTTGGGTCATGCTTAGAGAATCTTTTTGTACCTCACAATTGTAAAACTTAACATATATTTTCATCTAGGTACAGATGATATGAAGAGAGGGAAGTCCCAGAGTGAAGAGAAACACAGAGATATGTTTGATTTGGGGAGAAAGCT---GGGGG-------------GAATGAGCAAGAAGCAAAGAGTTCTAAGATGGAGTTTTAACATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30736230 223 + 172585720 ATTTATGGCTTTTCATCTTTGGGTCATGCTTAGAGAATCCTTTTGTACTTCACGATTGTAAAACTTAACATATATTTTCATCCAGGTACAGATGATATGAAGAGAGGGAAGTCCCTGAGTGAAGAGAAACACAGAGATATGTTTGATTTGGGGAGAAAGCT---GGGGGTGAAAACTGGGGCTAATGAGCAAGAAGCAAAGAGTTCTAAGGTGGAGTTTTAATATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30032818 223 - 170955103 ATTTATGGCTTTTCATCTTTGGGTCATGCTTAGAGAATCCTTTTGTACTTCACGATTGTAAAACTTAACATATATTTTCATCCAGGTACAGATGATATGAAGAGAGGGAAGTCCCTGAGTGAAGAGAAACACAGAGATATGTTTGATTTGGGGAGAAAGCT---AGGGGTGAAAGCTGGGGGTAATGAGCAAGAAGCAAAGAGTTCTAAGGTGGAGTTTTAACATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     268271 223 +   1495729 ATTTATGGCTTTTCATCTTTGGGTCATGCTTAGAGAATCCTTTTGTACTTCACGATTGTAAAACTTAACATATATTTTCATCCAGGTACAGATGATATGAAGAGAGGGAAGTCCCTGAGTGAAGAGAAACACAGAGATATGTTTGATTTGGGGAGAAAGCT---GGGGGTGAAAACTGGGGCTAATGAGCAAGAAGCAAATAGTTCTAAGGTGGAGTTTTAACATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     377229 223 -    863181 ATTTATGGCTTTTCATCTTTGGGTCATGCTTAGAGAATCCTTTTGTACTTCACGATTGTAAAACTTAACACATATTTTCATCCAGGTACAGATGATACGAAGAGAGGGAAGTCCCTGAGTGAAGAGAAACACAGAGATATGTTTGATTTGGGGAGAAAGCT---GGGGGTGAAAGCTGGGGGTAATGAGCAAGAAGCAAAGAGTTCTAAGGTGGAGTTTTAACATT
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     204308 223 -    735854 ATTTATGGCTTTTCATCTTTGGGTCATGCTTAGAGAATCCTTTTGTACTTCACGATTGTAAAACTTAACATATATTTTCATCCAGGTACAGATGATATGAAGAGAGGGAAGTCCCTGAGTGAAGAGAAACAGAGAGATATGTTTGATTTGGGGAGAAAGCT---GGGGGTGAAAGCTGGGGCTAATGAGCAAGAAGCAAAGAGTTCTAAGGTGGAGTTTTAACATT
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30341757 210 + 171630274 ATTTATGGCTTTTTATCTCTGGGTCATG-----------CTTTTCTACTTCACAATTATAAAACTTAACATATATTTTCATCTAGGTACAGACGATATGATGAGAGGGAAGTCTAAGAGTAAAGAAAAACACAGAAGTATGTTTGATTTGGGGAGAAAGCT---GGGGGTGAAAGGTAGG--GAATGAGCAAGAAGCACAGAGTTCTAAGGTGAAGTTTTAACATT
i calJac3.chr4             C 0 I 308
s saiBol1.JH378341           165979 122 +    515838 ATTTATGGCTTTTCATCTCTGGGTCATGCTTAGAGAATCCTTTTCTATTTCACAATTGTAAAACTTAACATATATTTTCATCTAGGTACAGATGATATGATGAG--------------------------------------------------------------------------------------------------------AGGTGCAGTTTTAACATT
i saiBol1.JH378341         I 2136 C 0
s cebCap1.NW_016107755v1     799833 224 -   1771730 ATTTACGGCTTTTTATCTCTGGGTCATGCTTAGAGAATCCTTTTCTACTTCACAATTGTAAAACTTAACATATATTTTCATCTAGGTACAGATGATATGATGAGAGGGAGGTCCAAGAGTAAAGAAAAACACAGAAGTATGTTTGATTTGGGGAGAAAGCTGCGGTGGGGGAAAGGTAGG--GAATGAGCAAGAAGCACAGAGTTCTATGGTGGAGTTTTAACATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     279019 221 -    383796 ATTTATGGCTTTTCATCTCTGTGTCATGCTTAGAGAATCCTTTTCTACTTCACAATTGTAAAACTTAACATATATTTTCATCCAGGTACAGATGATATGATAAGAAGGAAGTCCAAAAGTAAAGAAAAACACAGAAGTATGTTTGATTTAGGGAGAAAGCT---GGGGGTGAAAGGTAGG--GAATGAGTAAGAAGCACAGAGTTCTAAGGTGGAGTTTTCACATT
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I
e colAng1.NW_012115577v1     172277   0 -   1829203 C
e chlSab2.chr17            29535032   0 -  71996105 C

a score=11043193.000000
s hg38.chr6_GL000254v2_alt  1382086 1584 +   4827813 TAAAACCTggtcaggtgtggtggctcacgcctgtaatcctagcacttttggagggcaaggtaggcagatcactcgaggtcaggagttcaagaccagcctggccaacatggtgtattcaccaaaaaatacaaaaactagccaggtgtggtggtgtgtgcctgtaggcccagctacttgggaggctgaggtggaagaatcacctgaacctgggaggcggaggttgcagtgagccatgattgcccaactgcaatccagcctgggtggcagaataagactctatctcaaaaat-gaaaaaG---------TTTAAATCATTTGCTTATAATTTTAAAATATGTCTACAAAGCCTATAAGATATTTTATATGGCAACTTCAATAAATACTTTCTCTTGGGCTAAGTAATGACTTATATACCTCCTTGTGTTCACCAGGT--TATAGAAAACAGTAACACCAAGAGTCTCAATGAAATATTG--ACAAGGATTAGCTCTGGTG-ATAAGCATTTTTGAAAATGTATGACCTTGAGTTGATAAATCATGTTTTGGTAATCTATACGTACACTC-TAATTGTTAAAATACATATTGAACTTTCTTGGGCCTGCTGTATTTTAGGGATATGTCTAAGACCCACATAGCCAAATCCATGGGTTCTATGTGAAGGTAATTTTAATGTATTTCAATCTGGGAGTCACAAGGTATCTTTTTTTGTGGGGGAGATTGAAAACTAAGAGCACTCTAGATAAGc-------aaaatggtaactactagctacacatggctatttatatttcaattaattgaataaaacttttaaaaaatcaactctttatcacactagccacattccaagtgctcaataaccacatgtaactagtggctcccatattggacagtgcagatatagatcaatttcatcatcacagaatgttctattgaacagcactACtgctatagagatttttatgctcctcccaaaa--------taaaacctaatccccaatgagatgatatttggaagtgggtttgttttagaggaagtgattatgtcatgaggtcagaactcccatgaattgaacttgtacccttataaaagagattctagaaagctgtcttggccctt---ctgccatgggaggatgcagtgagaggacagctatgaagaagcaggccctcaccagacacagagttagctgacaccttgatattggacctcccagcctccagcactgtgagaaatatctt---tcttttgtttataagccacctaatcta-gggtatttttgttatagcagcctgatggattaagataACTGCTCTTGGTGCTATGTGGGCCTCAAGTCAAGTGCATTAGACACATCTAAAATGAAAGGGTgactggttgtggtgacttacgcctgtaatcccagcactttgggaggccaaagcaggaggatcgcttgagctcagaagtttgaaaccagcctggggaacatagcaagatcccatctctacaaaatattttttaaaattagctctacaaa--atatata-atttttaaaattagctggacatgctggcaagtgcctgtagttcc-aacagcttaagagtctgaggtgggaggatggcttgagcc-ccccg
s panTro5.chr6             30255479 1593 + 175400573 TAAAACCTggtcaggtgtggtggctcacgcctgtaatcctaacacttttggagggcaaggaaggcagatcactcgaggtcaggagttcaagaccagcctggccaacatggtgtattcaccaaaaaatataaaaactagccaggtgtggtggtgcatgcctgtaggcccagctacttgggaggctgaggtggaagaatcacctgaacctgggaggcggaggttgcagtgagccatgattgcccaactgcaatccagcctgggtggcagaataagactctgtctcaaaaat-gaaaaaG---------TTTAAATCATTTGCTTATAATTTTAAAATATGTCTACAAAGCCTATAAGATATTTTATATGGCACCTTCAATAAATACTTTCTCTTGGGCTAAGTAATGACTTATATACCTCCTTGTGTTCACCAGGTTATATAGAAAACAGTAACACCAAGAGTCTCAATGAAATATTG--ACAAGGATTAGCTCTGGTG-ATAGGCATTTTTGAAAATGTATGACCTTGAGTTGATAAATCATGTTTTGGTAATCTATACGCACACTC-TAATTGTTAAAATACATATTGAACTTTCTTGGGCCTGCTGTATTTTAGGGATATGTCTAAGACCCACATAGCCAAATCCATGGGTTCCATGTGAAGGTAATTTTAATGTATTTCAATCTGGGAGTCATAAGGTATCTTTTTTTGTGGGGGAGATTGAAAACTAAGAGCACTCTAGATAAgcactatcaaaaatggtaactactagctacacatggctatttatatttcaattaattgaataaaacttttaaaaaatcaactctttatcacactagccacattccaagtgttcaataaccacatgtaactagtggctcccatattggacagtgcagatatagatcaatttcatcatcacagaatgttctattgaacagcactACtgctatagagatttttatgctcctcccaaaa--------taaaacctaatccccagtgagatgatatttggaagtgggtttgttttagaggaagtgattatgtcatgaggtcagaactcccatgaattgaacttgtacccttataaaagagattctagaaagctgtcttggccctt---ctgccatgggaggatgcagtgagaggacagctatgaagaagcaggccctcaccagacacagagttagctgacaccttgatattggacctcccagcctccagcactgtgagaaatatctt---tcttttgtttataagacacctaatcta-gggtatttttgttatagcagcctgatggattaagataACTGCTCTTGGTGCTATGTGGGCCTCAAGTCAAGTGCATTAGACACATCTAAAATGAAAGGGTgactggttgtggtgacttacgcctgtaatcccagcactttgggaggccaaagcaggaggatcgcttgagctcagaagtttgaaaccagcctggggaacatagcaagatcccatctctacaaaatatttttttaaattagctctacaaa--atatata-attttttaaattagttggacatgctggcaagtgcctgtagttcc-accagcttaagagtctgaggcgggaggatggcttgagcc-ccccg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30486005 1593 + 173848474 TAAAACCTggtcaggtgtggtggctcacgcctgtaatcctaacacttttggagggcaaggaaggcagatcactcgaggtcaggagttcaagaccagcctggccaacatggtgtattcaccaaaaaatataaaaactagccaggtgtggtggtgcatgcctgtaggcccagctacttgggaggctgaggtggaagaatcacctgaacctgggaggcggaggttgcagtgagccatgattgcccaactgcaatccagcctgggtggcagaataagactctgtctcaaaaat-gaaaaaG---------TTTAAATCATTTGCTTATAATTTTAAAATATGTCTACAAAGCCTATAAGATATTTTATATGGCACCTTCAATAAATACTTTCTCTTGGGCTAAGTAATGACTTATATACCTCCTTGTGTTCACCAGGTTATATAGAAAACAGTAACACCAAGAGTCTCAATGAAATATTG--ACAAGGATTAGCTCTGGTG-ATAGGCATTTTTGAAAATGTATGACCTTGAGTTGATAAATCATGTTTTGGTAATCTATACGCACACTC-TAATTGTTAAAATACATATTGAACTTTCTTGGGCCTGCTGTATTTTAGGGATATGTCTAAGACCCACATAGCCAAATCCATGGGTTCCATGTGAAGGTAATTTTAATGTATTTCAATCTGGGAGTCATAAGGTATCTTTTTTTGTGGGGGAGATTGAAAACTAAGAGCACTCTAGATAAgcactatcaaaaatggtaactactagctacacatggctatttatatttcaattaattgaataaaactttaaaaaaatcaactctttatcacactagccacattccaagtgctcaataaccacatgtaactagtggctcccatattggacagtgcagatatagatcaatttcatcatcacagaatgttctattgaacagcactACtgctatagagatttttatgctcctcccaaaa--------taaaacctaatccccagtgagatgatatttggaagtgggtttgttttagaggaagtgattatgtcatgaggtcagaactcccatgaattgaacttgtacccttataaaagacattctagaaagctgtcttggccctt---ctgccatgggaggatgcagtgagaggacagctatgaagaagcaggccctcaccagacacagagttagctgacaccttgatattggacctcccagcctccagcactgtgagaaatatctt---tcttttgtttataagacacctaatcta-gggtatttttgttatagcagcctgatggattaagataACTGCTCTTGGTGCTATGTGGGCCTCAAGTCAAGTGCATTAGACACATCTAAAATGAAAGGGTgactggttgtggtgacttacgcctgtaatcccagcactttgggaggccaaagcaggaggatcgcttgagctcagaagtttgaaaccagcctggggaacatagcaagatcccatctctacaaaatattttttaaaattagctctacaaa--atatata-attttttaaattagttggacatgctggcaagtgcctgtagttcc-accagcttaagagtctgaggcgggaggatggcttgagcc-ccccg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     192611 1593 +   2037526 TAAAACCTggtcaggtgtggtggctcacgcctgtaatcctagcacttttggagggcaaggtaggcagatcactcaaggtcaggagttcaagaccagcctggccaacatggtgtatttaccaaaaaatacaaaaactagccaggtgtggtggtgcgtgcctgtaggcccagctacttgggaggctgaggtggaagaatcacctgaacctgggaggcagaggctgcagtgagccatgattgcccaactgcaatccagcctgggtggcagaataagactctgtctcaaaaat-gaaaaaG---------TTTAAATCATTTGCTTATAATTTTAAAATATGTCTACAAAGCCTATAAGATATTTTATATGGCACCTTCAATAAATACTTTCTCTTGGGCTAAGTAATGACTTATATACCTCCTTGTGTTCACCAGGT--TATAGAAAACAGTAACACCAAGAGTCTCAATGAAATATTG--ACAAGGATTAGCTCTGGTG-ATAGGCATTTTTGAAAATGTATGACCTTGAGTTGATAAATCATGTTTTGGTAATCTATACGTACACTC-TAATTGTTAAAATACATATTGAACTTTCTTGGGCCTGCTGTATTTTAGGGATATGTCTAAGACCCACACAGCCAAATCCAT-GGTTCTATGTGAAGGTAATTTTAATGTATTTCAATCTGGGAGTCACAAGGTATCTTTTTTTGTGGGGGAGATTGAAAACTAAGAGCACTCTAGATAAgcactatcaaaaatggtaactactagctacacatggctatttatatttcaattaattgaataaaacttttaaaaaatcaac-ctttatcacactagccacattccaagtgctcaataaccacatgtaactagtggctcccatattggacagtgcagatatagatcaatttcatcatcacagaatgttctattgaacagcactACtgctatagagatttttatgctcctcccaaaa--------taaaacctaatccccagtgagacgatatttggaagtgggtttgttttagaggaagtgattatgtcatgaggtcagaactcccatgaattgaacttgtacccttataaaagagattctagaaagctgtcttggcccttctgctgccatgggaggatgcagtgagaggacagctatgaagaagcaggccctcaccagacacagagttagctgacaccttgatattggacctcccagcctccagcactgtgagaaatatctt---tcttttgtttataagccacctaatctaggggtatttttgttacagcagcctgatggattaagataACTGCTCTTGGTGCTATGTGGGCCTCAAGTCAAGTGCATTAGACACATCTAAAATGAAAGGGTgactggttgtggtgacttacacctgtaatcccagcacttttggaggccaaagcaggaggatcgcttgagctcagaagtttgaaaccagcctggggaacatagcaagatcccatctctacaaaatattttttaaaattagctctacaaa--atatata-attttttaaattagctggacatgctggcaagtgcctgtagttcc-accagcttaagagtctgaggtgggaggatggcttgagcc-ccccg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74864956 1588 + 122973662 TAAAACCTggtcaggtgtggtggctcacacctataatcctagcacttttggagggcaaggtaggcagaccacttgaggtcaggagttcaagaccagcctggccaacacggtatatttaccaaaacatacaaaaactagctgggtgtggtggtacgtgcctgtaggcccagctccttgggaggctgaggtggaagaatcgcctgaacctgggaggcggaggttgcagtgagccatgattgccctactgcaatccagcctgcgcagcagaataagacactgtctcaaaaac-gaaaaaG---------TTTAAATCGTTTGCTTATAATTTTAAAATATGTCTACAAAGCCTATAAGATATTTTATATGGCACCTTCAATAAATACTTTCTCTTGGGCTAAGTAATGACTTATATACCTCCTTGTGTTCACCAGGT--TATAGAAAACAGTAACACTGAGAGTCTCAGAGAAATATTG--ACAAGGATTAGCTCTGGTG-ATAGGCATTTTTGAAAATGTATGACCTTGAGTTGATAAATCATGTTTTGGTAATCTATATGTACACTC-TAATTGTTAAAATACATATTGAACTTTCTTGGGCCTGCTGTATTTTAGGGATATGTCTAAGACCCACATAGCCAAATCCATGGCTTCTATGTGAAGATGATTTTAATGTATTTCAATCTGGGAGTCACAAGGTATC-TTTTTTGTGGGGGAGATTGAAAACTAAGAGCACTCTAAATAAgcactatcaaaaatggtaactactagctacacatggctatttatatttcaattaattgaataaaacttttaaaaaatcaactctttatcacactagccacattccaagtgctcaataaccacatgtaactagt-gctcccatattggacagtgcagatatagatcaacttcatcatcacagaatgttctattgaacagcactACTGCT-TAGACatttttatgctcctcccaaaa--------taaaacctaatccccagtgagatgatatttggaagtgggcttgttttagaggaagtgattatgtaatgaggtcagaactcccatgaattgaacttgtacccttataaaagagattctagaaagctgtcttggtcctt---ctgccacgggaggatgcagtgagaggacagctgtgaagaagcaggccctcaccagacacggagttagctaacaccttgatattggacctcccagcctccagcactgtgagaaatacctt---tcttttgtttataagccacctaatcta-gggtatttttgttatagcagcctgatggattaagataACTGCTCTTGGTGCTATGTGGGCCTCAAGTCAAGTGCATTAGACACATTTAAAATGAAAGGGTgactggttgtggtggctcacgcctataatcccagcactttgggaggccaaagcaggaggatcgcttgagctcagaactttgaaaccagcctggggaacatagcaagatcccatctctacaaaatattttttaaaattagctccacaaa--atatata-attttttaaattagctggacatgctggcaagtgcctgtagttcc-accagcttaagagtctgaggcaggaggatggcttgagcc-cccca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30736453 1585 + 172585720 TAAAACCTggtcaggtgtggtggctcatgcctgtaatcctagcactcttggagggcaaggtgggcggatcacttgaggtcaggagttcaagaccagcctggtcaacgtggtgtatttaccaaaaaatacaaaaactagccaagtgtggtggcgcatgcctgtagtcccagctacttgggaggctgaggtggaagaatcgcttgaacccaggaggcggaggttgcagtgagccatgattgccccactgcactccagcctgggtggcagaataagactctgtctcaaaaaa-gaaaaagaa---aaaaTTTAAAACTTTTGCTTATAATTTTAAAATATGTCTACAAAGCCTATGAGATATTTTACATGGCACCTTCAATAAATACTTTCTCTTGGGCTAAGTAATGACTTATATATCTCCTTGTGTTCATCAGGT--TATAGAAAACAATAATACCAAGAGTCTTAACAAAATATAG--ACAAGGATTAGCTCTGGTG-ATAGGCATTTTTAAAAATGTATGACCTTGAGTTGATAAATCATGCTTTGGTAATCTGTATGTACACTC-TAATTGTTAAAATACATATTGAACTTTCTTAGGCCTGCTGTATTTTAGGGATATGTCTAAGACCCACATAACCAAATCCAAGGGTTCTATGTGAAGGTAATTTTAATGTATTTCAATCTAGGAGTCAAAACGTATC-TTTTTTGTGGGGGAGATTGAAAACTAAGAGCACTCTAGATAAAcactatcaaaaatggtaactactagctacacatggccatttatatttcaattaattgaataaaacttt-aaaaaatcaac----tgtcacactatccacattccaagtgctcaatacccacatgtaactagtggctcccatattggacagtgcagatatagatcaacttcatcatcacagaatgttctgttaaacagctctACTGCCATAGACatttttatgctcctctcaaaa--------gaaaacctaatccccagtgagatggtatttggaagtgg----gttttagaggaagtgattacgtcatgaggtcagaactcccatgaattgaacttgtacccttataaaaaagattctagaaagttgtcttgcccctt---ctgccatgggagggtgcagtgaaaggacagctatgaggaagcaggccctcaccagacacagagttagaagacaccttgatattggacctcctagcctccagcgatgtgagaaatacctt---tcttttgcttataagccacctaatcta-gggtatttttgttatagcagcctgatggattaagGTAACTGCTCTTGGTGCTATGTGGGCCTCAAGTCAAGTGCATTAGACGCATTTAAAATGAAAGGGTgactggttgtgttggcttacacctgtaattccagcactttgggacgccaaagcaggatgatcgcttgagctcagaagtttgagacaagcctggggaacatagcaagatcccatctctacaaaaatatgtttaaaa-----tctacaaaatatatatatatatttaaaactagctggacatggtggcaagtgcctgtagttcc-accagcttaagagtctgaggcaggaggatcgcttgagcc-cccgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30033041 1501 - 170955103 TAAAACCTggtcaggtgtggtggctcatgcctgtaatcctagcacttttggagggcaaggtgggcggatcacttgaggtcaggggttcaagaccagcctggtcaacatggtgtatctaccaaaaaatacaaaaactagccaagtgtggtggcacatgcctgtagtcccagctacttgggaggctgaggtggaagaattgcttgaacccaggaggcggagattgcagtgagccatgattgccccactgcactccagcctgggtggcagaataagactctgtctcaaaaaa-gaaaaagaa---aaaaTTTAAAACTTTTGGTTATAATTTTAAAATATGTCTACAAAGCCTATGAGATATTTTATATGGCACCTTCAATAAATACTTTCTCTTGGGCTAAGTAATGACTTATATATCTCCTTGTGTTCATCAGGT--TATAGAAAACAATAATACCAAGAGTCTTAACGAAATATAG--ACAAGGATTAGCTCTGGTG-ATAGGCATTTTTGAAAATGTATGACCTTGAGTTGATAAATCACACTTTGGTAATCTGTATGTACACTC-TATTTGTTAAAATACATATTGAACTTTCTTAGGCCTGCTGTATTTTAGGGATATGTCTAAGACCCACATAACCAAATCCAAGGGTTCTATGTGAAGGTAATTTTAATGTATTTCAATCTAGGAGTCAAAACGTATC-TTTTTTGTGGGGGAGATTGAAAACTAAGAGCACTCTAGATAAGCACTATCAAAAATGGTAACTACtagctacacatggctatttat---------------------------------------------------------------------------------------gtggctcccatattggacagtgcagatatagatcaacttcatcatcacagaatgttctattaaacagctctACTGCCATAGACATTTTTATGCTTCTCTCAAAA--------GAaaacctaatccccagtgagatggtatttggaagtgg----gttttagaggaagggattacatcatgaggtcagaactcccatgaattgaactcgtacccttataaaagagattctagaaagttgtcttgcccctt---ctgccatgggagggtgcagtgaaaggacagctatgaggaagcaggccctcaccagacacagagttagatgacaccttgatattggacctcctagcctccagcactgtgagaaatacctt---tcttttgcttataagccacctaatcta-gggtatttttgttatagcagcctgatggattaagGTAACTGCTCTTGGTGCTATGTGGGCCTCAAGTCAAGTGCATTAGACACATTTAAAATGAAACGGTGACTGCTTgtggtagcttacgcctgtaattccagcactttgggaggccaaagcaggatgatcgcttgagctcagaagtttgagacaagcctggggaacatagcaagatcccatctctacaaaaatatgtttaaaa-----tctacaaa--atatatatatacttaaaactagctggacatggtggcaagtgcctgtagttcc-accagcttaagagtctgaggtgggaggatcgcttgagcc-cccgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     268494 1586 +   1495729 TAAAACCTggtcaggtgtggtggctcatgcctgtaatcctagcactcttggagggcaaggtgggcggatcacttgaggtcaggagttcaagaccagcctggtcaacgtggtgtatttaccaaaaaatacaaaaactagccaagtgtggtggcgcatgcctgtagtcccagctacttgggaggctgaggtggaagaatcgcttgaacccaggaggcggaggttgcagtgagccatgattgccccactgcattccagcctgggtggcagaataagactctgtctcaaaaaa-gaaaaagaa---aaaaTTTAAAACTTTTGCTTATAATTTTAAAATATGTCTACAAAGCCTATGAGATATTTTACATGGCACCTTCAATAAATACTTTCTCTTGGGCTAAGTAATGACTTATATATCTCCTTGTGTTCATCAGGT--TATAGAAAACAATAATACCAAGAGTCTTAATGAAATATAG--ACAAGGATTAGCTCTGATG-ATAGGCATTTTTGAAAATGTATGACCTTGAGTTGATAAATCATGCTTTGGTAATCTGTATGTACACTC-TAATTGTTAAAATACATATTGAACTTTCTTAGGCCTGCTGTATTTTAGGGATATGTCTAAGACCCACATAACCAAATTCAAGGGTTCTATGTGAAGGTAATTTTAATGTATTTCAATCTAGGAGTCAAAACGTATC-TTTTTTGTGGGGGAGATTGAAAACTAAGAGCACTCTACATAAAcactatcaaaaatggtaactactagctacacatggccatttatatttcaattaattgaataaaacttt-aaaaaatcaac----tgtcacactatccacattccaagtgctcaatacccacatgtaactagtggctcccatattggacagtgcagatatagatcaacttcatcattacagaatgttctgttaaacagctctACTGCCATAGACATTTTTATGCTCCTCGCAAAA--------GAaaacctaatccccagtgagatggtatttggaagtgg----gttttagaggaagtgattacgtcgtgaggtcagaactcccatgaattgaacttgtacccttataaaaaagattctagaaagttgtcttgcccctt---ctgccatgggagggtgcagtgaaaggacagctatgaggaagcaggccctcaccagacacagagttagatgacaccttgatattggacctcctagcctccagcgatgtgagaaataaaagaaagcttttgcttataagccacctaatcta-gggtatttttgttatagcagcctgatggattaagGTAACTGCTCTTGGTGCTATGTGGGCCTCAAGTCAAGTGCATTAGACGCATTTAAAATGAAAGGGTgactggttgtgttggcttacacctgtaattccagcactttgggaggccaaagcaggatgatcgcttgagctcagaagtttgagacaagcctggggaacatagcaagatcccatctctacaaaaatatgtttaaaa-----tctacaaa--atatatatatatttaaaactagctggacatggtggcaagtgcctgtagttcc-accagcttaagagtctgaggcgggaggatcgcttgagcc-cccgg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     377452 1501 -    863181 TAAAACCTggtcaggtgtggtggctcatgcctgtaatcctagcacttttggagggcaaggtgggcggatcacttgaggtcaggggttcaagaccagcctggtcaacatggtgtatctaccgaaaaatacaaaaactagccaagtgtggtggcacatgcctgtagtcccagctacttgggaggctgaggtggaagaattgcttgagcccaggaggcggagattgcagtgagccatgattgccccactgcactccagcctgggtggcagaataagactctgtctcaaaaaa-gaaaaagaa---aaaaTTTAAAACTTTTGGTTATAATTTTAAAATATGTCTACAAAGCCTATGAGATATTTTATATGGCACCTTCAATAAATACTTTCTCTTGGGCTAAGTAATGACTTATATATCTCCTTGTGTTCATCAGGT--TATAGAAAACAATAATACCAAGAGTCTTAACGAAATATAG--ACAAGGATTAGCTCTGGTG-ATAGGCATTTTTGAAAATGTATGACCTTGAGTTGATAAATCACGCTTTGGTAATCTGTATGTACACTC-TAATTGTTAAAATACATATTGAACTTCCTTAGGCCTGCTGTATTTTAGGGATATGTCTAAGACCCACATAACCAAATCCAAGGGTTCTATGTGAAGGTAATTTTAATGTATTTCAATCTAGGAGTCAAAACGTATC-TTTTTTGTGGGGGAGATTGAAAACTAAGAGCACTCTAGATAAGCTCTATCAAAAATGGTAACTATtagctacacatggctatttat---------------------------------------------------------------------------------------gtggctcccatattggacagtgcagatatagatcaacttcatcatcacagaatgttctattaaacagctctACTGCCATAGACatttttatgctcctctcaaaa--------gaaaacctaatccccagtgagatggtatttggaagtgg----gttttagaggaagtgattacatcatgaggtcagaactcccatgaattgaactcgtacccttataaaagagattctagaaagttgtcttgcccctt---ctgccatgggagggtgtagtgaaaggacagctatgaggaagcaggccctcaccagacacagagttagatgacaccttgatattggacctcctagcctccagcgatgtgagaaatacctt---tcttttgcttataagccacctaatcta-gggtatttttgttatagcagcctgatggattaagGTAACTGCTCTTGGTGCTATGTGGGCCTCAAGTCAAGTGCATTAGACACATTTAAAATGAAACGGTgactggttgtggtagcttacacctgtaattccagcactttgggaggccaaagcaggatgatcgcttgagctcagaagtttgagacaagcctggggaacatagcaagatcccacctctacaaaaatatgtttaaaa-----tctacaaa--atatatatatacttaaaactagctggacatggtggcaagtgcctgtagttcc-accagcttaagagtctgaggcgggaggatcgcttgagcc-cccag
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     204531 1583 -    735854 TAAAACCTggtcaggtgtggtggctcatgtctgtaatcctagcactcttggagggcaaggtgggcggatcacttgaggtcaggagttcaagaccagcctggtcaacgtggtgtatttaccaaaaaatacaaaaactagccaagtgtggtggcgcatgcctgtagtcccagctacttgggaggctgagatggaagaatcgcttgaacccaggaggcggaggttgcagtgagccatgattgccccactgcactccagcctgggtggcagaataagattctgtctcaaaaaa-gaaaaggaa---aaaaTTTAAAACTTTTGCTTATAATTTTAAAATATGTCTACAAAGCCTATGAGATATTTTACATGGCACCTTCAATAAATACTTTCTCTTGGGCTAAGTAATGACTTATATATCTCCTTGTGTTCATCAGGT--TATAGAAAACAATAATACCAAGAGTCTTAACGAAATATAG--ACAAGGATTAGCTCTGGTG-ATAGGCATTTTTGAAAATGTATGACCTTGAGTTGATAAATCATGCTTTGGTAATCTGTATGTACACTC-TAATTGTTAAAATACATATTGAACTTCCTTAGGCCTGCTGTATTTTAGGGATATGTCTAAGACCCACATAACCAAATCCAAGGGTTCTATGTGAAGGTAATTTTAATGTATTTCAATCTAGGAGTCAAAACGTATC-TTTTTTGTGGGGGAGATTGAAAACTAAGAGCACTCTAGATAAgcactatcaaaaatggtaactactagctacacatggctatttatatttcaattaattgaataaaacttt-aaaaaatcaac----cgtcacactatccacattccaagtgctcaatacccacatgtaactagtggctcccatattggacagtgcagatatagatcaacttcatcatcacagaatgttctgttaaacagctctACTGCCATAGACATTTTTATGCTCCTCTCAAAA--------GAaaacctaatccccagtgagatggtatttggaagtgg----gttttagaggaagtgattacgtcatgaggtcagaactcccatgaattgaacttgtacccttataaaagagattttagaaagttgtcttgcccctt---ctgccatgggagggtgcagtgaaaggacagctatgaggaagcaggccctcaccagacacagagttagatgacatcttgatattggacctcctagcctccagcgatgtgagaaatacctt---tcttttgcttataagccacctaatcta-gggtatttttgttatagcagcctgatggattaagGTAACTGCTCTTGGTGCTATGTGGGCCTCAAGTCAAGTGCATTAGACGCATTTAAAATCAAAGGGTgactggttgtgttggcttacgcctgtaattccagcactttgggaggccaaagcaggatgatcgcttgagctcagaagtttgagacaagcctggggaacatagcaagatcccatctctacaaaaatatgtttaaaa-----tctacaaa--atatatatatatttaaaactagctggacatggtggcaagtgcctgtagttcc-accagcttaagagtctgatgcaggaggatcgcttgagcc-cccgg
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30342275 1535 + 171630274 taaaaCCTggtcaggcgtggtggctcacacctgttatgttaacacttttggagggcaaggcgggtagattacttgaggtcaggagttcaagaccatcctagccaacatgat-tatttgccaaaacatacaaaaatcagccaggtgtggtggtacatgactgtagtcccagctactcaggaggctgaggtgagagaatcctttgaacgcatgaggccgaggttacagtgagtcatgattgtcccactgcactccagcctgggtgacagaataagcctctgtctcaaaaag-aaaaaaagaaacaaaaTTTAAATCTTTTGCTTATAATTTTAAAATATGTCTACAAAGCCTATAAGATATTTTATATGGCGCCTTCAATAAATACTTTCTCTTGGGCTAAGTAATGACATACATGCCTCCTTGTGTTCACCAGTT--TAGAGAAA--TATAACATCAAGAGTCTCAATGAAATATAG--ATAAAGATTAGCTATGGTG-ATAGGCATTTTTGAAAATGGATGACCTTGAGTTGATCAATCATGTTTTGGTCATCTGTATGTATACTCTTCATTGTTAAAATACATATTGAACTTTCTTGGGACTGCTGTATTTTAGAGATATGTCTAAGACCCACATGGCCAAATCCATGGCTTCTGTGTGAAGATAATTTTAATGTATTTCAATCTAGGAGTCTCAATGTATC-TTTTTTGTGGGGGAAATTGAAAACTAAGAGCACTCTAGATAAgcattattgaaaatggtaactactagctacacatggctatttatatttaaattaattgaataaaacttttgaaaaatcaactctttatcacactagccatattccaagtgctcaatacccacatgtaactggtagctcccatattggacagcgcagatatagatcaatttcatcaccacagaatgtgcttttgagcagcactACTGCTACAGA-----------------------catgtgttaaaacctaatccccagtgcgatgatatttggaagtgg----gttttagaggaagtgattatgtcatgagg-------tcccatgaattgaacttgtatctttataaaagagagcctagaaaactctcttgctcctt---ccaccatgggaggacgcaatgaaaagacggctatgaggaagcaggccctcaccag------agttagctaacaccttgatatcggacctcccagcctccagcactgtgagaaatacatt---tattttgtttataagccacctagtcta-gggtatttttgtcataggaacctgatggactaagataACTTTTCTTAATGCTATGTGGGCCTCAAGTCAAGTATACTAGACACATTTAAAATAAAAAGGTgactggttgtggtggttcacccctgt-atcccagcactttgccaggccaaagcaggaggatcgcttgagctcagaagttcaagaccagcctgggtaacatagc-agaccccatc--------------------------tctacaaa--atat----ttttttttaattagttggacatggtggcaagagcctctagttcc-agcagtttaagaatctgaggcaggagaattgcttgaaccttcccc
i calJac3.chr4             I 308 I 10
s saiBol1.JH378341           166101 1559 +    515838 TAAAACCTggtcaggtgtgttggctcacacctgttaacctaacacttttggagggcaaagtgggcggattacttgaggtcaggagttcaagaccatcctagccaacatggt-tatttaccagaaaatacaaaaatcagctggatgtggtggcacatgactgtagtcccagctactcaggaggctgaagtgggagaatcctttgaactcgtgaggccgaggttacagtgagtcatgattgtcccactgcactccagcctgggtgacagaataagactctgtctcaaaaagaaaaaaaagaaacaaaaTTTAAATCTTTTGCTTATAATTTTAAAATATGCCTACAAAGCCTATAAGATATTTTACATGGCACCTTCAATAAATACTTTCTCTTGGGCTAAGTAATGACATATATACCTCCTTGTGTTCACCAGGT--TACAGAAA--TATAACCTGAAGAGTCTCAACGAAATATAG--ACAAGGATTAGCTATGGTGAACAGGCATTTTTGAAAATGTATGACCTTGAGTTGATGAATCATGTTTTGGTAATCTGTATGTACACTCTTAATTGTT--AATACATATTGAACTTTCTTGGGCCTGCTATATTTTAGGGATATGTCTAAGACCCACATGATCAAATCCGTGGCTTCTGTGTGAAGATAATTTTAATGTATTTCAATCTAGGAGTCTCAATGTATC-TTTTTTGTGGAGGAGATTGAAAACTAAGAGCACTCTAGATAAgcattatcaaaaatggtaactactagctacacgtggctatttatatttaaattaattgaataaaacttttgaaaaatcaactctttatcacactagccctattccaagtgctcaatacccacatgtaactggtagctcccatattggacagtgcagatatagatcaatttcatcaccacagaatgtgcttttgagcagcATTTCtgctatagacatttttatgctcttcccagtttcatgtgttaaaacctaatctccagtgtgatgatatttggaagcag----gttttagaggaagtgatcatgtcatgagg-------tcccatgaattgaacttgtatctttataaaagagaatgtagaaaactgtcctgcccctt---ccaacaggggaggacgcagtgaaaagacggctataaggaagcaggccctcaccaaac----agttagtgaacaccttgatattggacctcccagcctccagcactgtgagaaataaatt---tattttttttataagccacctagtcta-ggatatttttgtcataggagcctgatggactaagataACTTCTCTTAATGCTATGTGGGCCTCAAGTCAAGTATATTAGACACATTAAAAATAAAAAGGTgactggttgtggtggttcacacctgt-atcccagcactttgggaggccaaagcaggaggatcacttgagctcagaagttcaagaccagcctgggtaacatagcaagaccccatc--------------------------tctacaaa--ata-----tttttttaaattagcttaacatggtggcaagagcctgtagttcc-agcagtttaagagtctgaggcaggagaattgcttgagcc-tcccc
i saiBol1.JH378341         C 0 I 10
s cebCap1.NW_016107755v1     800057 1558 -   1771730 TAAAAACTggtcaggtgtggtggctcagacctgttatcctaacacttttggagggcaaggtgggcagattacttgaggtcaggagttcaagaccatcctagccaacatggt-tatttaccaagaaatacaaaaatcagctgggtgtggcagtgcatgactgtagtcccagctactcgggagactgaggtgggagaatcctttgaactcgggaggctgaggttgcagtgagtcatgactgtcccactgcactccagcctgggtgacagaataagactctgtctcaaaaag-aaaaaaagaaacaaaaTTTAAATCTTTTGCTTATAATTTTAAAATATGTCTACAAAGCCTATAAGATATTTTATATGGCACCTTCAATAAATACTTTCTCTTGGGCTAAGTAATGACATATATACCTCCTTGTGTTCACCAGGT--TATAGAAA--TATAATATCAAGAGTCTCAATGAAATATAG--ACAAGGATTAGCTATGGTG-ATATGCATTTTTGAAAATGTATGACCTTGAGTTGATAAATCATGTTTTGGTAACCTGTATGTACACTCTTAATTGTT--AATACATATTGAACTTTCTTGGGCCTGCTGTATTTTAGGGATATGTCTAAGACGCACATGGCCAAATCCATGGCTTCTGTGTGACGATAATTTTAATGTATTTCAATCTAGGAGTCTCAATGTATC-TTTTTTGTAGGGGAGATTGAAAACTAAGAGCACTCTAGATAAgcattatcgaaaatggtaactactagctatgcatggctatttatatttaaattaattgaataaaacttttcaaaaatcaactgtttatcacactagccatattccaaatgttcaatacccacatgtaactggtagctcgcatattggacagtgcagatatagatcgatttcatcaccacagaatgttcttttgagcagcactACtgctatagaca-ttttatgctcctcccagattcatgtgttaaaacctaatccccagtgagatgatattcggaagtgg----gttttagaggaaatgattatgtcatgaag-------tcccatgaattgaacttgtatctttataaacgagagcctggaaaactgtcttgcccctt---ccaccatgggaggacgcagtgaaaa-acagctatgaggaagcaggccctcaccaaaca--gagtgagcgaacatcttgatattggacctcccagcctccagccctgtgagaaatacatt---tattttgtttataagccacctagtctc-gggtatttttgtcataggagcctgatggactaagataACTTCTCTTAATGCTATGTGGGCCTCGAGTCAAGTGTATTAGACACATTTAAAATAAAAAGGTggctggtcgtggtggttcacacctgt-atcccagcactttgggaggccaaagcaggaggatcgcttgagctcagaagttcaagaccagcctgggtaacatagcaagaccccatc--------------------------tccacaaa--ata-----ttttttaaaattagctggacatggtggcaagagcctgtagttccaagcagtttaagagtctgaggcaggaggattgcttgagcc-tcccc
i cebCap1.NW_016107755v1   C 0 I 19
s aotNan1.NW_018496904v1     279240 1556 -    383796 TAAAACCTggtcaggtgtggtggctcacacctattatgctaacacttttgggaggcaaggtgggcggattatttgtggtcaggagttcaagaccatcttagccaacatggt-tatttaccaaaaaatttaaaaatcagccaggtgtggtggcacatgactgtagtcccagctactcaggaggctgaggtgggagaatcctttgaactcatgaggctgaggttgcagtgagtcatgattgtcccactgcactccagcctgggtaacagaataagactctgtctcaaaaag-aaaaaaagaaacaaaaTTTAAATCTTTTGATTATAATTTTAAAATATGTCTACAAAGCCTATAAGAT-TTTTATATGGCACCTTCAATAAATACTTTCTCTTGGGCTAAGTAATGACATATATACCTCCTTGTGTTCACCAGGT--TATAAAAA--TATAACATCAAGAGTCTCAATGAAATATAGACACAAGAATTAGCTATGGTG-ATAGGCATTTTTGAAAATGTATGACCTTGAGTTGATAAATCATGTTTTGGTAATCTGTATGTACACTCTTAATTGTT--AATACATATTGAACTTTCTTGGGCCTGCTGTATTTTAGGGATATGTCTAAGACCCACGTGGCCAAATCCATGGCTTCTGTGTGAAGATAATTTTAATGTATTTCAATCTAGGAGTCTCAATGTATC-TTTTTTGTGGGGGAGATTGAAAACTAAGAGCACTCTAGATAAgcattatcgaaaatggtaaccactagctacacctggctatttatatttaaattaattgaataaaactttttaaaaatcaactctttatcacactagccatattccaagtgctcaatacccacatgtaactagtagctcccatattggacagtgcagatatagattgatttcatcaccacagaatgttcttttgagcagcactACtgctatagacatttttatgcttctcccagattcatgtgttaaaacctaatccccagtgagatgatatttggaagtgg----gttttagaggaagtgattatgtcatgagg-------tcctatgaattgaacttgtatgtttataaaagagagcctagaaaactgtcttgcccctt---ccaccatgggaggacacagtgaaaagatggctatgaggaagcaggacctcatgag------agttagctaacaccttgatattggacctcccagcctccagcactgtgagaaattcatt---tattttgtttataagccacctagtcta-gggtatttttgtcataggagcctgatggattaagataACTTCTCTTAATGCTATGTGGGCCTCAAGTCAAGCATATTAGACACATTTAAAATGAAAAGGTgactggttgtggtggttcacacctgt-atcccagcactttgggaggccaaagcaggagggtcgcttgagcacagaagttcaagaccagcctgagtaacatagcaagaccccatc--------------------------tctacaaa--ata-----tttttaaaaattagctggacatggtggcaagagcctgtagttcc-agcagtttaggagactgaggcaggaggattgcttgagcc-tcccc
i aotNan1.NW_018496904v1   C 0 I 11
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464    5 +  18854210 I
e colAng1.NW_012115577v1     172277    0 -   1829203 C
e chlSab2.chr17            29535032    0 -  71996105 C

a score=40603.000000
s hg38.chr6_GL000254v2_alt  1383670 9 +   4827813 agagttcgc
s panTro5.chr6             30257072 9 + 175400573 agagttcgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30487598 9 + 173848474 agagttcgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     194204 9 +   2037526 agagttcgc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74866544 9 + 122973662 agagttcgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30738038 9 + 172585720 agagttcac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30034542 9 - 170955103 agagttcac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     270080 9 +   1495729 agagttcac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     378953 9 -    863181 agagttcac
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     206114 9 -    735854 agagttcac
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30343820 8 + 171630274 agggctca-
i calJac3.chr4             I 10 C 0
s saiBol1.JH378341           167670 8 +    515838 agggttca-
i saiBol1.JH378341         I 10 C 0
s aotNan1.NW_018496904v1     280807 8 -    383796 agggttca-
i aotNan1.NW_018496904v1   I 11 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464 5 +  18854210 I
e cebCap1.NW_016107755v1     801615 19 -   1771730 I
e colAng1.NW_012115577v1     172277 0 -   1829203 C
e chlSab2.chr17            29535032 0 -  71996105 C

a score=5027127.000000
s hg38.chr6_GL000254v2_alt  1383679 688 +   4827813 cactacagtgagccattatcatgccactgcactctagcttgggtgacactgtgagaccccatcttggaaaaaacagaaaTGAAAGGGCCAATATTATTTCTCATAGAGATTGCAAATTCAAAGTGGGTCAGGAGTGAAATCTCTATTTTGTGCTTTTAGGCGCAAACCATTCCCAGCTCCAAAATGGAAACACATTTGCCACCTCTGTTCCCAGACTAAGGACACTCTCTGC------------------------------------------------------------ATCCAATTTACAGGTGATAGGTTCTCTTCTATAAGAGCCCAGGGCAAGGCAAACTTAGCGCTAGCTAAGTTTTGGGATGCAGGGAGTCCTGCTCGGGGAGAAAAATTT-GGGAAAAT---GAAGAGGCAAAGGGGCCAGTCAAGAACTCTCCACAGCTTACCCAGAACAGGATttctcaaagtgcaatctgtggaacccttgtgggctgctgaaaccccttcatagatccacaaggttaaaagtatttttataatacaatgaagacattatttgtactaaagtaaaacttgacaagaagggaggctatggtaccaaactgaaatagtagttattatattcttaaccacttcttaattatagaag-----aaaaaacaggtttcacttaaatatgtcctggttgaagtatcaaagaattattaactttattaaatctctatcccagaatccacagtttaatatatc
s panTro5.chr6             30257081 688 + 175400573 cactacaatgagccattatcatgccactgcactctagcttgggtgacactgtgagaccccatcttggataaaacagaaaTGAAAGGGCCAATATTATTTCTCATAGAGATTGCAAATTCAAAGTGGGTCAGGAGTGAAATCTCTATTTTGTGCTTTTAGGCGCAAACCATTCCCAGCTCCAAAATGGAAACACATTTGCCACCTCTGTTCCCAGACTAAGGACACTCTCTGC------------------------------------------------------------ATCCAATTTACAGGTGATAGGTTCTCTTCTATAAGAGCCCAGGGCAAGGCAAACTTAGCGGTAGCTAAGTTTTGGGATGCAGGGAGTCCTGCTTGGGGAGAAAAATTT-GGGAAAAT---GAAGAGGCAAAGGGGCCAGTCAAGAACTCTCCACAGCTTACCCAGAACAGGATttctcaaagtgcaatctgtggaacccttgtgggctgctgaaaccccttcatagatccacaaggttaaaagtatttttataatataatgaagacattatttgTACTAAAGTAAAActtgacaagaagggaggctatggtaccaaactgaaatagtagttattatattcttaaccacttcttaattatagaag-----aaaaaacaggtttcacttaaatatgtcctggttgaagtatcaaagaattattaactttattaaatctctatcccagaatccacagtttaatatatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30487607 688 + 173848474 cactacaatgagccattatcatgccactgcactttagcttgggtgacactgtgagaccccatcttggaaaaaacagaaaTGAAAGGGCCAATATTATTTCTCATAGAGATTGCAAATTCAAAGTGGGTCAGGAGTGAAATCTCTATTTTGTGCTTTTAGGCGCAAACCATTCCCAGCTCCAAAATGGAAACACATTTGCCACCTCTGTTCCCAGACTAAGGACACTCTCTGC------------------------------------------------------------ATCCAATTTACAGGTGATAGGTTCTCTTCTGTAAGAGCCCAGGGCAAGGCAAACTTAGCGCTAGCTAAGTTTTGGGATGCAGGGAGTCCTGCTCGGGGAGAAAAATTT-GGGAAAAT---GAAGAGGCAAAGGGGCCAGTCAAGAACTCTCCACAGCTTACCCAGAACAGGATttctcaaagtgcaatctgtggaacccttgtgggctgctgaaaccccttcatagatccacaaggttaaaagtatttttataatataatgaagacattatttgTACTAAAGTAAAActtgacaagaagggaggctatggtaccaaactgaaatagtagttattatattcttaaccacttcttaattatagaag-----aaaaaacaggtttcacttaaatatgtcctggttgaagtatcaaagaattattaactttattaaatctctatcccagaatccacagtttaatatatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     194213 689 +   2037526 cactacagtgagccattatcatgccactgcactctagcttgggtgacactgtgagaccccatcttggaaaaaacagaaaTGAAAGGGCCAATATTATTTCTCATAGAGATTGCAAATTCAAAGTGGGTCAGGAGTGAAATCTCTATTTTGTGCTTTTAGGCGCAAACCATTCCCAGCTCCAAAACGGAAACACATTTGCCACCTCTGTTCCCAGACTAAGGACACTCTCTGC------------------------------------------------------------ATCCAATTTACAGGTGATAGGTTCTCTTCTATAAGAGCCCAGGGCAAGGCAAACTTAGTGCTAGCTAAGTTTTGGGATGCAGGGAGTCCTGCTCGGGGAGAAAAATTTGGGGAAAAT---GAAGAGGCAAAGGGGCCAGTCAAGAACTCTTCACAGCTTACCCAGAACAGGATttctcaaagtgcaatctgtggaacccttgtgggctgctgaaaccccttcatagatccacaaggttaaaagtatttttataatataatgaagacattatttgtactaaagtaaaacttgacaagaagggaggctatggtaccaaactgaaatagtagttattatattcttaaccacttcttaattatagaag-----aaaaaacaggtttcacttaaatatgtcctggttgaagtatcaaagaattattaactttattaaatctctatcccagaatccacagtttaatatatc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74866553 687 + 122973662 cactacagtgagccattatcatgccactgcactctagcttgggtaacagtgtgagaccccatcttggaaaaaacagaaaTGAAAGGGCCAATATTATTTCTCATAGAGATTGCAAAATCAAAGTGGGTCAGGAGCG-AATCTCTATTTTGTGCTTTTAGGCACAAACCATTCCCAGCTCCAAAATGGAAACACATCTGCCACCTCTGTTCCCAGACTAAGGACACTCTCTGC------------------------------------------------------------ATCCAATCTACAGGTGATAGGTTCTCTTCTATAAGAGCCCAGGGCAAGGCAAACTCAGCGCTAGCTAAGTTTTGGGATGCAGGGAGTCCTACTCGGGGAGAAAAATTT-GGGAATAT---GAAGAGGCAAAGGGGGCAGTCAAGAACTCTCCACAGCTTACCCAGAACAGGATttctcaaagtgcaatctgtggaacccttgtgggctggtgaaatctcttcatagatccacaaggttaaaagtatttttataatataacgaagacattatttgTACTAAAGTAAAActtgacaagaagggaggctatggtaccaaactgaaatagtagttattatattcttaaccacttcttagttatagaag-----aaaaaacaggtttcacttaaatatgtcctggttgaagtatcaaaaaattattaactttattaaatctctatcccagaatccacattttaatatatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30738047 686 + 172585720 tactacagtgagccattatcatgccactgcactctagcttgggtgacagtgtgagactccatcttggaaaaaacaaaaaTGAAACAGCCAATACTATTTATCATAGAGACTGCAAAATCAAAGTGAGTCAGGAGTG-AATCTCTATTTTGTGCTTTCAGGCACAAATCGTCCCCAGCTCTAAAGGGGAAACGTATCTGCTACCTCTGTTCCCAGACTAAGGACACTCTCTGC------------------------------------------------------------ATCCAATCTACAGGTGATAGGTTCTCTTCTATAAGAGCCCAGGGCAGGGCAAACTTAGCACTAGTTAAGTTTTGAGATGCAGGGAGTCCTGCTCGGGGAGAAAAATTT-GGGGAAAT---GAAGAGGCAAA-GGACCAGTCAAGAACCCTCCATAGTTTACCCAGAACAAGATttctcaaagtgccgtctgtggaacccttgtgggctgctgaaaccccttcataaatccacaaggttaaaactatttttataatataatgaagatattatttgtactaaagtaaaacttgacaagaatggaggctatggtaccaacctgaaatagtagctattatattcttaaccacttcttaattatagaag-----aaaaaacaggttttgcttaaatatgtcctggttgaagtatcaaagaatgattaactttattaaatctctattccagaatccacattttaatatatc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30034551 687 - 170955103 tactacagtgagccattatcatgccactgcactctagcttgggtgacagtgtgagactccatcttggaaaaaaCCAAAATGAAACAGCCAATACTATTTACCATAGAGACTGCAAAATCAAAGTGGGTCAGGAGTG-AATCTCTATTTTGTGCTTTCAGGCACAAACCATTCCCAGCTCTAAAGGGGAAACACATCTGCTACCTCTGTTCCCAGACTAAGGACACTCTCTGC------------------------------------------------------------ATCCAATCTACAGGTGATAGGTTCTCTTCTATAAGAGCTCAGGGCAGGGCAAACTTAGCGCTAGCTAAGTTTTGAGATGCAGGGAGTCCTGCTCGGGGAGAAAAATTT-GGGGAAAT---GAAGAGGCAAAGGGACCAGTCAAGAACCCTCCATAGTTTACCCAGAACAAGATttctcaaagtgcactctgtggaacccttgtgggctgctgaaaccccttcataaatccacaaggttaaaactatttttataatataatgaagacattatttgTACTAAAGTAAAActtgacaagaatggaggctatggtaccaaactgaaatagtagttattatattcttaaccacttcttaattatagaag-----aaaaaacaggtttcgcttaaatatgtcctggttgaagtatcaaagaatgattaactttattaaatctctactccagaatccacattttaatatatc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     270089 686 +   1495729 tactacagtgagccattatcatgccactgcactctagcttggatgacagtgtgagactccatcttggaaaaaacaaaaaTGAAACAGCCAATACTATTTATCATAGAGACTGCAAAATCAAAGTGAGTCAGGAGTG-AATCTCTATTTTGTGCTTTCAGGCACAAATCGTCCCCAGCTCTAAAGGGGAAACGTATCTGCTACCTCTGTTCCCAGACTAAGGACACTCTCTGC------------------------------------------------------------ATCCAATCTACAGGTGAAAGGTTCTCTTCTATAAGAGCCCAGGGCAGGGCAAACTTAGCGCTAGCTAAGTTTTGAGATGCAGGGAGTCCTGCTCGGGGAGAAAAATTT-GGGGAAAT---GAAGAGGCAAA-GGACCAGTCAAGAACCCTCCATAGTTTACCCAGAACAAGATttctcaaagtgccgtctgtggaacccttgtgggctgctgaaaccccttcataaatccacaaggttaaaactatttttataatataatgaagacattatttgtactaaagtaaaacttgacaagaatggaggctatggtaccaacctgaaatagtagctattatattcttaaccacttcttaattatagaag-----aaaaaacaggttttgcttaaatatgtcctggttgaagtatcaaagaatgattaactttattaaatctctattccagaatccacattttaatatatc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     378962 687 -    863181 tactacagtgagccattatcatgccactgcactctagcttgggtgacagtgtgagactccatcttggaaaaaaCCAAAATGAAACAGCCAATACTATTTACCATAGAGACTGCAAAATCAAAGTGGGTCAGGAGTG-AATCTCTATTTTGTGCTTTCAGGCACAAACCATTCCCAGCTCTAAAGGGGAAACACATCTGCTACCTCTGTTCCCAGACTAAGGACACTCTCTGC------------------------------------------------------------ATCCAATCTACAGGTGATAGGTTCTCTTCTATAAGAGCTCAGGGCAGGGCAAACTTAGCGCTAGCTAAGTTTTGAGATGCAGGGAGTCCTGCTCGGGGAGAAAAATTT-GGGGAAAT---GAAGAGGCAAAGGGACCAGTCAAGAACCCTCCATAGTTTACCCAGAACAAGATttctcaaagtgcactctgtggaacccttgtgggctgctgaaaccccttcataaatccacaaggttaaaactatttttataatataatgaagacattatttgTACTAAAGTAAAActtgacaagaatggaggctatggtaccaaactgaaatagtagttattatattcttaaccacttcttaattatagaag-----aaaaaacaggtttcgcttaaatatgtcctggttgaagtatcaaagaatgattaactttattaaatctctactccagaatccacattttaatatatc
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     206123 686 -    735854 tactacagtgagccattatcatgccactgcactctagcttgggtgacagtgtgagactccatcttggaaaaaacaaaaaTGAAACAGCCAATACTATTTATCATAGAGACTGCAAAATCAAAGTGAGTCAGGAGTG-AATCTCTATTTTGTGCTTTCAGGCACAAACTGTTCCCAGCTCTAAAGGGGAAACGTATCTGCTACCTCTGTTCCCAGACTAAGGACACTCTCTGC------------------------------------------------------------ATCCAATCTACAGGTGATAGGTTCTCTTCTATAAGAGCCCAGGGCAGGGCAAACTTGGCGCTAGCTAAGTTTTGAGATGCAGGGAGTCCTGCTCGGGGAGAAAAATTG-GGGGAAAT---GAAGAGGCAAA-GGACCAGTCAAGAACCCTCCATAGTTTACCCAGAACAAGATttctcaaagtgcagtctgtggaacccttgtgggctgctgaaaccccttcataaatccacaaggttaaaactatttttataatataatgaagacattatttgtactaaagtaaaacttgacaagaatggaggctatggtaccaaactgaaatagtagctattatattcttaaccacttcttaattatagaag-----aaaaaacaggtttcgcttaaatatgtcctggttgaagtatcaaagaatgattaactttattaaatctctcttccagaatccacattttaatatatc
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30343828 683 + 171630274 cactacaattaaccatt---atgctactgcactctagcctgggtgaccgtgtgagaccccatcttggaaaaaacaaaaatgaaaGGGTCAATATTATTTCTCATGGAGATTGCAAAATCAAAGTGGGTCAGGAGTA-AATCTCTGTTTTGTGCTTTCAGGCACAAACCATTCCTAGTGCCGAA------ACTCACCTGCCACCTCTGTTCCCAGACTAAGAAG---CCCTGC------------------------------------------------------------GTCCAATTTACAACTAATAGGTTCTCTTCTATAAGAGCCCAGGACAGAGCAAACTTAGCACTAGCTAAGTTTTGGGATGCAGGGAGTCCTGTTCAGGGAGAAAAACTG-GGGGATATGAAGAAGAGGCAAAGGGGCCAGTCGAGAACTCTCCACAGCTTACCAAGAACAGGATttctcaaagtgcaatctgtggaaccgttgtgagctgctgaaacctcttcctagacccataaggttaaaactatttttataacataacgacgacattatttgttctaaagtaaaacttggcaagaatggaggctatggtgccaaactgcaatagtagttactatattcctaaccacttcttaattatagaagctagaaaaaaacaggtttcacttaaatttgtcctggttgaagtatcaaagaattattaactttattaaatctctatcccagagtccacattgcaatatatc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           167678 687 +    515838 cactacagttagccattatcatgctcctgcactc-agcctggctgaccatgtgagaccccatcttggaaaaaacaaaaatgaaaGGGCCAATATTATTTCTCGTGGAGACTGCAAAATCAAAGTGGGTCAGGAGTA-AATCTCTGTTTTGTGCTTCCAGGCACAAACCATTCCCAGTGCCAAAGGGGACACTCATCTGCCACCTCTGTTCCCAGACTAAGGAA---CCCTGT------------------------------------------------------------GTCCAATTTACAGCTAATAGGTTCTCTTCTATAAGAGCCCAGGACAGAGCAAACTTAGTGCTAGCTAAGTTTTGGGACACAGGGAGTCCTGTTCAGGGAGAAAAACTG-GGGGATATGAAGAAGAGGCAAAGGGGCCAGTCGAGAACCCTCCACAGCTTACCAAGAACAGGATttctcaaagtgcaatctgtggaaccgttatgggctgctgaaagctcttcctagacccacaaggttaaaactatttttataacataacaacgacattatttgtactaaagtaaaatttggcaagaatggaggctatggtaccaaactgcaatagta---attatattcttaacctcttcttaattatagaagctag-aaaaaacaggtttcacttaaatatgtcctggttgaagtatcaaagaattattaactttattaaatctctatcccaggatccacgttttaatatatc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     801634 751 -   1771730 cactacagttagccattatcatgctactgcattctagcctgggtgaccgtgtgagaccccatcttggaaaaaacaaaaaTGAAAGGACCAATATTATTTCTCATGGAGATCGCAAAATCAAAGTAGGTCAGGAGTA-AATCTCTGTTCTGTGCTTTCAGGCACAAACCATTCCCGGTGCCAAAGGGGAAACTCATCTGCCACCTCTGTTCCCAGACTAAGGAA---CCCTGCCACCTCTGTTCCCAGACTAAGGGACCCTGCCACCTCTGTTCCCAGACTAAGGAACCCTGTGTCCAATTTACAGCTAATAGGTCCTCTGCTATAAGAGCCCAGGACAGAGCAAACTTAGCGCTAGCTAAGTTTTCGGACGCAGGGAGTCCTGTTCAGGGAGAAAAACCG-GGGGATATGAAGAAGAGGCAAAGGGGACAGTCGAGAACCCTCCACAGTTTACCAAGAACAGGATttctcaaagtgcaatctgtggaaccattgtgggctgctgaaacctcttcctagacccataaggttaaaactatttttataacataacaacgacattatttgtactaaagtaaaacttggcaagaaaggaggctacagtaccaaactgcaatagtagttattatattcttaaccttttcttaattatagaagttagaaaaaaaca-gtttcacttaaatacgttctggttgaagtatcaaagaattattaactttattaaaactctatcccagagtccacattttaatatatc
i cebCap1.NW_016107755v1   I 19 C 0
s aotNan1.NW_018496904v1     280815 691 -    383796 cactacagttagccattatcatgctactgcattctagcctgggtgactgtgtgagaccccatattggaaaaaacaaaaaTGAAAGGGCCAATATTATTTCTCATGGAGATTGCAAAGTCAAAGTGGGTCAGGAGTA-AATCTCTGTTTTGTGCTTTCAGGCACAAACCATTCCCAGTGCCAAAGGGGAAACTCATCTGCCACCTCTGTTCCCAGACTAAGGAA---CCCTGC------------------------------------------------------------ATCCAATTTACAGCTAATAGGTTCTCTTCTATAAGAGTCCAGGACAGAGCAAACTTAGTGCTAGCTAAGTTTTGGGATGCAGGGAGTCCTGTTCAAGGAGAAAAACTG-GGGGATATGAAGAAGAGGCAAAGAGGCCAGTCGAGAACCCTCCACAGCTTACCAAGAACAGGATTTCTCAAAGTGCAATCTGTGAAAACATTATGGGCTGCTGAAACCTCTTCCTAGACCCATAGGGTTAAAACTATTTTTATAGGGTAATGACAACATTATTTGTACTAAAGTAAAActtggcaagaatggagtctatggtaccaaactgcaatagtagttattatattcttaacatcttcttaattatagaagctag-aaaaaacaggtttcacttaaatatgtcctagttgaagtatcaaagaattattaattttattaaatctccatcccagagtccacattttaatgtatc
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I
e colAng1.NW_012115577v1     172277   0 -   1829203 C
e chlSab2.chr17            29535032   0 -  71996105 C

a score=7334037.000000
s hg38.chr6_GL000254v2_alt  1384367 773 +   4827813 ttaaatgagtaagtgggaagtacgcataaggtatttctactacattccaaattaggatgtttgaggccaggcgcagtggctcccacctgcaattaattctagcactgtgggaggcctaggcaggtggatcatttgaggtcaggagttcaagaccagcttggccaacatggtg---aaaccctgtctctactaaaaatac-aaaattagccaggcatggtggtgcgcacctgtagtcccagctactagggaaactgagtcacaacaatcacttgaacccgggaggtggaggtttcagtgagccaaaatcatgccactgcactccagcctgggtaacagag-------cgagaccctgtcttaaaacgaaaacaaaaacaaattaaaatgtttgtgtccacaaaatcattttgtgagttgtactagtctattttttatggaatatcctttttacttgaaagaatgaatgacagaaatgattatcatttagacttgaatatttggctgacactttctcaaaaacgaacataaccctgtcccttccacataatcaactgatggtattattcccaatgataaaaggcaagctctcaagag-aaaattagaatcctggggaacttgtatccaccatcataagcctgatggcttcccaatacttaacaatcttttctggtaatatctgtggtactattaaaaaatgtg-a------ttttttgataacttgtagttaaatgtgtcaacactggaagacataatgtggtgaaattgtgtttctttttttaaaagtcatgt
s panTro5.chr6             30257769 772 + 175400573 ttaaatgagtaagtgggaagtacgcataaggtatttctactacattacaaattaggatgtttgaggccaggcgcagtggctcccacctgcaattaattctagcactgtgggaggcctaggcaggtggatcatttgaggtcaggagttcaagaccagcttggccaacatggtg---aaaccctgtctctactaaaaatac-aaaattagccaggcatggtggtgcgcacctgtagtcccagctactagggaagctgagtcacaagaatcacttgaacccgggaggtggaggtttcagtgagccaaaatcatgccactgcactccagcctgggtaacagag-------cgagaccctgtcttaaaacgaaaacaaaaacaaattaaaatgtttgtgtccacaaaatcattttgtgagttgtactagtctattttttatggaatatcctttttacttgaaagaatgaatgacagaaatgattatcgtttagacttgaatatttggctgacactctctcaaaaacgaacataaccctgtcctttccacgtaatcaactgatggtattattcccaatgataaaaggcaagctctcaagag-aaaattagaatcctggggaacttgtatccaccatcataagcctgatggcttcccaatacttaacaatcttttctggtaatatctgtggtaata-taaaaaatgtg-a------ttttttgataacttgtagttaaatgtgtcaacgctggaagacataacgtggtgaaattgtgattctttttttaaaagtcatgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30488295 772 + 173848474 ttaaatgagtaagtgggaagtacgcataaggtatttctactacattacaaattaggatgtttgaggccaggcgcagtggctcccacctgcaattaattctagcactgtgggaggcctaggcaggtggatcatttgaggtcaggagttcaagaccagcttggccaacatggtg---aaaccctgtctctactaaaaatac-aaaattagccaggcatggtggtgcgcacctgtagtcccagctactagggaagctgagtcacaagaatcacttgaacccgggaggtggaggtttcagtgagccaaaatcatgccactgcactccagcctgggtaacagag-------cgagaccctgtcttaaaacgaaaacaaaaacaaattaaaatgtttgtgtccacaaaatcattttgtgagttgtactagtctattttttatggaatatcctttttacttgaaagaatgaatgacagaaatgattatcgtttagacttgaatatttggctgacactctctcaaaaacgaacataaccctgttctttccaagtaatcaactgatgatattattcccaatgataaaaggcaagctctcaagag-aaaattagaatcctggggaacttgtatccaccatcataagcctgatggcttcccaatacttaacaatcttttctggtaatatctgtggtaata-taaaaaatgtg-a------ttttttgataacttgtagttaaatgtgtcaacgctggaagacataacgtggtgaaattgtgtttctttttttaaaagtcatgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     194902 773 +   2037526 ttaaatgagtaagtgggaagtacgcataaggtatttcttctacattccaaattaggatgtttgaggccaggcgcagtggctcccacctgcaattaattctagcactgtgggaggcctaggcaggtggatcatttgaggtcaggagttcaagaccagcttggccaacatggtg---aaaccctgtctccactaaaaacac-aaaattagccaggcatggtggtgcgcacctgtagtcccagctactagggaagctgagtcacaagaatcacctgaacccgggaggtggaggtttcagtgagccaaaatcatgccactgcactccagcctgggtaacagag-------cgagaccctgtcttaaaacgaaaacaaaaacaaattaaaatgtttgtgtccacaaaatcattttgtgagttgtactagtctattttttatggaatatcctttttacttgaaagaatgaatgacagaaatgattatcatttagacttgaatatttggctgacactttctcaaaaatgaacataaccctgtccctttcacataatcaactgatggtattattcccaatgataaaaggcaagctctcaagag-aaaattagaatcctggggaacttgtatccaccatcataagcctgatggcttcccaatacttaacaatcttttctggtaatatctgtggtaatatttaaaaatgtg-a------ttttttgataacttgtagttaaatgtgtcaacactggaagacataacgtggtgaaattgtgtttctttttttaaaagtcatgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74867240 762 + 122973662 ttaaatgattaagtgggaagtacgcctaacgtacttctactacattccaaattaggatgtttgaggccgggcacagtggctcacacctgcaattaattctagcactgtgggaggcctag-----------atttgaggtcaggagttcaagacccgcctggccaacatggtg---aaaccctgtctctattaaaaatac-aaaattagccaggcatggtggtgcgcacctatagtcccagctactagggaagctgagtcacaagaatcacttgaacccaggaggtggaggtttcagtgagccaaaatcgtgccactgcactccagcctgggtaacagag-------tgagaccctgtcttaaaacaaaaacaaaaacaaattaaaatgtttgtgtccacaaaatcattttgtgagttgtactagtctattttttatggaatatcctttttacttgaaagaatgaatgacagaaatgattaccatttagacttgaatatttggctgacactttctcaaaaattaacataagcctgtcccttccacataatccactgatggtattattcccaatgataaaaggcaagctctcaagag-aaaattagaatcctggggaacttgtatccaccatcataagcctgatggcttcccaatacttaacaaccttttctggtgatatctgtggtaatattaaaaaatgtg-a------ttttttgataacttgtagttaaatgtgtcaacactggaggacataacgtggtgaaattgtgtttctttttttaaaagtcatgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30738733 767 + 172585720 ttaaatgattaagtggtaagtacatataaggtacttctaccacattccaaattaggatgtttgaggccaggcgcagtggctcacacctgcaattaattctagcactgtgggaggcctaggcaggtggaccatttgaggtcaggagttcaagaccagcctggccaacatagtg---aaaccccatctctactaaaaatac-aaaattagccaggaatggtggtgcacacctttagtcccagctactagggaagctaagtcatgagaatcacttgaactcacgaggtgggggtttcagtaagccaaaatcgtgccactacactccagcctgggtaacggag-------tgagaccctgtctt------aaaacaaaaacaaattaaaatgttcgtgtctacaaaatcattttgtgagttgtactagtctattttttatggaatatcctttttacttgaaagaatgaatgacaggaatgattatcatttagacttgaatatttggctgacactttctcaaaaatgaacatgagcctgtgccctccacataatccactgacagtattattcccaatgataaaaggtgagctctcaagagaaaaattagaatcctggagaacttgtacccaccattgtaagcctgacggcttcccaatatttaacaaccttttctggtgatatctgtggtaatattaaaaaat-tg-a------ttttttgataacttgtagttaaatgtgtcaacactggaagacataacatggtgaaattgtatttcttttctttaaagtcatgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30035238 768 - 170955103 ttaaatgattaagtggtaagtacacataaggtacttctaccacattccaaattaggatgtttgagaccaggcacagtggctcacacctgcaattaattctagcactgtgggaggcctaggcaggtggaccatttgaggtcaggagttcaagaccagcctggccagcatagtg---aaaccccatctctactaaaaatac-aaaattagccaggcatggtggtgcacacctttagtcccagctactagggaagctaagtcatgagaatcacttgaactcgggaggtggaggtttcagtaagccaaaatcacgccactgcactccagcctgggtaacagag-------tgagaccctgtctt------aaaacaaaaacaaattaaaatgttcgtgtccacaaaatcattttgtgagttgtactagtctattttttatggaatatcctttttacttgaaagaatgaatgacagaaatgattatcatttagacttgaatatttggctgacactttctcaaaaatgaacatgagcctgtcccctccacataatccactgacagtattattcccaatgataaaaggcgagctctcaagagaaaaattagaatcctggagaacttgtactcaccattgtaagcctgatggcttcccaatacttaacaaccttttctggtgatatctgtggtaatattaaaaaat-tg-a-----tttttttgataacttatagttaaatgtgtcaacactggaagacataacgtggtgaaattgtatttcttttctttaaagtcatgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     270775 767 +   1495729 ttaaatgattaagtggtaagtacatataaggtacttctaccacattccaaattaggatgtttgaggccaggcgcagtggctcacacctgcaattaattctagcactgtgggaggcctaggcaggtggaccatttgaggtcaggagttcaagaccagcctggccaacatagtg---aaaccccatctctactaaaaatac-aaaattagccaggaatggtggtgcacacctttagtcccagctactagggaagctaagtcatgagaatcacttgaacttgcgaggtggaggtttcagtaagccaaaatcgtgccactacactccagcctgggtaacagag-------tgagaccctgtctt------aaaacaaaaacaaattaaaatgttcgtgtctacaaaatcattttgtgagttgtactagtctattttttatggaatatcctttttacttgaaagaatgaatgacaggaatgattatcatttagacttgaatatttggctgacactttctcaaaaatgaacatgagcctgtcccctccacataatccactgacagtattattcccaatgataaaaggcgagctctcaagagaaaaattagaatcctggagaacttgtacccaccattgtaagcctgacggcttcccaatacttaacaaccttttctggtgatatctgtggtaatattaaaaaat-tg-a------ttttttgataacttgtagttaaatgtgtcaacactggaagacataacgtggtgaaattgtatttcttttctttaaagtcatgt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     379649 768 -    863181 ttaaatgattaagtggtaagtacacataaggtacttctaccacattccaaattaggatgtttgaggccaggcgcagtggctcacacctgcaattaattctagcactgtgggaggcctaggcaggtggaccatttgaggtcaggagttcaagaccagcctggccagcatagtg---aaaccccatctctactaaaaatac-aaaattagccaggcatggtggtgcacacctttagtcccagctactagggaagctaagtcatgagaatcacttgaactcgagaggtggaggtttcagtaagccaaaatcgcgccactgcactccagcctgggtaacagag-------tgagaccctgtctt------aaaacagaaacaaattaaaatgttcgtgtccacaaaatcattttgtgagttctactagtctattttttatggaatatcctttttacttgaaagaatgaatgacagaaatgattatcatttagacttgaatatttggctgacactttctcaaaaatgaacatgagcctgtcccctccacataatccactgacagtattattctcaatgataaaaggcaagctctcaagagaaaaattagaatcctggagaacttgtactcaccattgtaagcctgacagcttcccaatacttaacaaccttttctggtgatatctgtggtaatattaaaaaat-tg-a-----tttttttgataacttatagttaaatgtgtcaacactggaagacataacgtggtgaaattgtatttcttttctttaaagtcatgt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29535032 768 -  71996105 TTAAAtgattaagtggtaagtacacataaggtacttctaccacattccaaattaggatgtttgaggccaggtgcagtggctcacacctgcaattaattctagcactgtgggaggcctaggcaggtggatcatttgaggtcaggagttcaagaccagcctggccaacacagtg---aaaccccatctctactaaaaatac-aaaattagccaggcatggtggtgcacacctttagtcccagctactagggaagctgagtcatgagaatcacttgaacccaggaggtggaggtttcagtaagccaaaaccgtgccactgcactccagcctgggtaacagag-------tgagaccctgtctt------aaaacaaaaacaaattaaaatgttcgtgtccacaaaatcattttgtgagttgtactagtctattttttatggaatatcctttttacttgaaagaatgaatgacagaaatgattatcatttagacttgaatatctggctgacactttctcaaaaatgaacatgagcctgtcccctccacataatccactgacagtattattcccaatgataaaaggcaagctctcaagagaaaaattagaatcctggagaacttgtacccaccatggcaagcctgacggcttcccaatacttaacaaccttttctggtgatatctgtggtaatattaaaaaat-tg-a-----tttttttgataacttgtagttaaatgtatcaacattggaagacataacgtggtgaaattgtatttcttttctttaaagtcatgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     206809 769 -    735854 ttaaatgattaagtggtaagtacatataaggtacttctaccacattccaaattaggatgtttgaggccaggcgcagtggctcacacctgcaattaattctagcactgtgggaggcctaggcaggtggaccatttgaggtcaggagttcaagaccagcctggccaacatagggcaaaaaccccatctctactaaaaatac-aaaattagccaggaatggtggtgcacacctttagtcccagctactagggaagctaagtcatgtgaatcacttgaactcgcgaggtggaggtttcagtaagccaaaatcgtgccactacactccagcctgggtaacagag-------tgagaccc-gtctt------aaaacaaaaacaaattaaaatgttcgtgtctacaaaatcattttgtgagttgtactagtctattttttatggaatatcctttttacttgaaagaatgaatgacaggaatgattatcatttagacttgaatatttggctgacactttctcaaaaatgaacatgagcctgtcccctccacataatccactgacagtattattcccaatgataaaaggcgagctctcaagagaaaaattagaatcctggagaacttgtacccaccactgtaagcctgacggcttcccaatacttaacaaccttttctggtgatatctgtggtaatattaaaaaat-tg-a------ttttttgataacttgtagttaaatgtgtcaacactggaagacataacatggtgaaattgtatttcttttctttaaagtcatgt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     172277 773 -   1829203 TTAAAtgattaagtggtaagtacacataaggtacttctaccacattccaaattaggatgtttgaggccaggtgcagtggctcacacctgcaattaattctagcactgtgggaggcctaggcaggtggatcatttgaggtcaggagttcaagaccaacctggccaacatagtg---aaaccccatctctactaaaaatac-aaaattagccaggcatggtggtgcacacctttagtcccagctactagggaagctgagtcatgagactcacttgaaaccaggaggtagaggtttcagtaagccaaaattgcgccactgcactccagcttgggtaacagag-------tgagaccctgtctt------aaaacaaaaacaaattaaaatgttcatgtccacaaaatcattttgtgagttgtactagtctattttttacggaatatcctttttacttgaaagaatgaattacagaaatgattatcatttagacttgaatatttggctgacactttctcaaaaatgaacatgagcctgtcccctccacataatccactgacagtattattcccaatgataaaaggcaagctctcaagagaaaaattagaatcctggagaacttgtactcaccattgtaagcctgacggcttcccaatacttaacaaccttttctggtgatatctgtggtaatattaaaaaat-tg-attgattttttttgataacttgtagttaaatgtgtcaacactgaaagacataatgcggtgaaattgtatttcttttctttaaagtcatgt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30344511 767 + 171630274 ttaaatgattaagtgggaagtgcacataaggtacttctactgcattccaaattaggatgtttgagaccaggcacagtggctcacacctgtaattaattccagcactgtgggaggtctaggcaggtggatcatttgaggtcaggagtttgagaccagcctggccaacatggta---aaaccccatctctactgaaaatacaaaaattcgccaggcatggtggtgcacatctgaagtcccagctacttggg-agctgaggcaggagaatcacttgaacctaggaggtagaggtttcggtgagccaaaatcatgccacttcgctccagcctgggtaacagagcaccacacaa-----tgtttt------aaaacaaaaacacattaggatgcttgtggcaagaaaatcattttgtgcgttgtactagtctattgtttag-gaatatcctttttacttgaaagaataaatgacgaaaatgattaacatttagacttgaatatttggctgaaactttctcaaaaatgaacatgagcctgtcccttccacataacccactgacagtacttttgctaatgataaaaggcaagctctcaagag-aagcctggaatcctggagaacttgtatctaccatcgtaagcctcatagcttcccaatactt-acacgcttttctggtgatatctgtggtaatattaaaaagtgtg-g------ttttcttataacttgcaattaaatatgtcaacactggaagataacacttggtgaaattgtgtttctttttttaaaactcatgt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           168365 741 +    515838 ttaaatgattaagtggaaaatacacataagatacttctactgcattccaaattaggatgtttgagaccaggcacagtggctcacacctgtaattaattccagcactgtgggaggcctaggtgggtgggtcatttgaggtcaggagtttgagaccagcctggccaacatggtg---aaaccccatttctactgaaaatacaaaaagtaagcaggcatggtggtgcgcatctgtcatcccagctacttggg-agctgaggcaggagaatcacttgaacctaggaggtagaggtttcagtgagccaaaatcatgccactgcactccaacctggataacagag-------caa-----tgtt----------------------tttggatgttcgtgtcaacaaaatcattttgtgagttgtactagtc-attttttat-gaatatcctttttacttggaagaataaatgacagaaatgattatcatgtagatttgaatatttggctgacactttctcaaaaatgaacatgagcctgtcccttccacataatgcactgacagtattgttgctaatgataaaaggcaagctctcaagag-aaaactggaatcctggagaacttgtatctaccaacgtaagcctgataacttcccattactt-acaagtttttctggtggtatctgt-gtaat-ttcaaaaatgtg-c------ttttctgataacttgcagttagacatgtcaacactggaagataaaacttggtgaaattctgtttcttttttttaaagtcatgt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     802385 765 -   1771730 ttaaatgattaagtgggaagtccacacaaggtacttctactgcattccaaattaggatgtttgagaccaggcacagtggctcacacctgtaattaattccagcactgtgggaggcctaggtgggtggatcgtttgaggtcaggggtttgagaccagcctggccaacatggta---aaaccccgtctctactaaaaatacaaaaattagccaggcatggtggtgtgcatctgtagtcccagctacttggg-agctgaggcaggagaatcacttgaacctaggaggtagaggtttcagtgagccaaaatcatgccactgcactccagcctgggtaacagag-------caagaccctgtctt------aaaacaaaaacacattaggatgttcgtgtcaacaaaatcattttgtgagttgtactagtctcttttttat-gaatatcctttttacttgaaagaataaatgacagaaatgattatcatttagacttgaatatttggctgacactttctcaaaaatgaacatgagcctgtcccttccacataatccactgacagtattgttgctaatgataaaaggcaagctctcaagag-aaaactggaatcctggagaacttgtatctaccatcgtaagcctgatagcttcccaatactt-acaagtttttctggtgatatctgtggtaat-tttaaaaatgtgat------ttttctgataacttgcagttaaatatgtcaacactggaagataaaacttggtgaaattgtgtttcttttttttaaagtcatgt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     281506 760 -    383796 ttaaatgattaagtgggaattacgcatgaggtacttccactgcattccaaattaggatgtttgagaccaggcacagtggctcacacctgcaattaattccagcactgtgggaggcctaggtgggtggatcgtttgaagtcaggagtttgagaccagcctggccaacatagtg---aaaccccatctctactaaaaatacaaaaattagccaggcatggtggtgcacctctgtagtcccagctacttggg-agctgaggcaggagaatcacttgaacctaggaggcagaggtttcagtgagccaaaatcatgccactgcactccagcctgggtaacagag-------caagacc-tgtctt------aaaacaaaaacacattaggatgctcgtgtcaacaaaatcattttgtgagttgtactagtctattttttat-gaatatcctttttacgtaaaag----aatgacagaaatgattatcatttagacttgaatatttggctgacactttctcaaaaatgaacatgagcctatcccttccacataatccactgacagtattgttgctaatgataaaaggcaagctctcaagag-aaaactggaatcctggagaatttgtatctaccattgtaagcctgatagcttcccaatactt-acaagcttttctggtgatatctatggtaatatttaaaaatgtg-g------ttttctgataacttgcagttaaatacgtcaacactggaagataaaacttggtgaaATTGTGTTTCTTTTTTTAAAAGTCATGT
i aotNan1.NW_018496904v1   C 0 I 3780
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I

a score=6656824.000000
s hg38.chr6_GL000254v2_alt  1385140 846 +   4827813 attatacaagaagcattcaatgtggaagtcggacctatatattttaatgtaacagcatgtgaaatagttattgatagtttcatgttccacattacaaataacctttaa----------gaagctaacacttctatcattttagtgtagtatcaaggatgaatatc--cagttttctaaaa-atgttattaaaaacattcctggcctagcgaggtgacttatacctgtaatcccagcattttgggaggccaaggcaggagaatcatttgagcctaggagttccacccaggagttc-------------------gaatgagacc--------cccatctctacaaaaaataaacaaaattagctgtggtggtgtttcgtgcctgtggtcacagctgctcatgaggctgaattgggaggatcacttgagcccaggaattcgagg--------------------------------------------------------------ctgccgtgtgctatgatcacaccactacactcaagcctgggtgatagcatgagacc--------aaaag-aaacaaacaaacaaa--caaaaccccccaacaaaacccaaaacaagaacagcaacaaaaatatcattgtgtgaggatgga--t---tttttttcatacacttcaaccaaacataacagattaaccaaaataacagattaaatg-----aaggagaagaaaattcattaatcttctaatgagacacataagaaaaggatttacaaacatacaaaatgt-aaaaagatgcactcttctcactatactgtttactttgggaaatactgactttgcataaaaatatttctaacatgcaatgca-ttattaatattctaaatgaataaaataatttaagtgattttagtttctaatatggtaaatattaacgtatataactcacataaaattatcttcagag
s panTro5.chr6             30258541 846 + 175400573 attatacaagaagcattcaatgtggaagttggacctatatattttaatgtaacagcatgtgaaatagttattgatagtttcatgttccacattacaaataacctttaa----------gaagctaacacttctatcattttagtgtagtatcaaggatgaatatc--cagttttctaaaa-atgttattaaaaacattcctggcctagcgaggtgacttatacctgtaatcccagcattttgggaggccaaggcaggagaatcatttgagcctaggagttccacccaggagttc-------------------gaatgagacc--------cccatctctacaaaaaataaacaaaattagctgcggtggtgtttcgtgcctgtggtcacagctgctcatgaggctgaattgggaggatcacttgagcccaggaattcgagg--------------------------------------------------------------ctgccgtgtgctatgatcacaccactacactcaagcctgggtgatagcatgagacc--------aaaag-aaacaaacaaacaaa--caaaaccccccaacaaaacccaaaacaagaacagcaacaaaaatatcattgtgtgaggatgga--t---tttttttcatacacttcaaccaaatataacagattaaccaaaataacagattaaatg-----aaggagaagaaaattcattaatcttctaatgagacacataagaaaaggatttacaaacatacaaaatgt-aaaaagatgcactcttctcactatactgtttactttgggaaatactgactttgcataaaaatatttctaacatgcaatgca-ttattaatattctaaatgaataaaataatttaagtgattttagtttctaatatggtaaatattaacgtatataactcacataaaattatcttcagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30489067 846 + 173848474 attatacaagaagcattcaatgtggaagttggacctatatattttaatgtaacagcatgtgaaatagttattgatagtttcatgttccacattacaaataacctttaa----------gaagctaacacttctatcattttagtgtagtatcaaggatgaatatc--cagttttctaaaa-atgttattaaaaacattcctggcctagcgaggtgacttatacctgtaatcccagcattttgggaggccaaggcaggagaatcatttgagcctaggagttccacccaggagttc-------------------gaatgagacc--------cccatctctacaaaaaataaacaaaattagctgcggtggtgtttcgtgcctgtggtcacagctgctcatgaggctgaactgggaggatcacttgagcccaggaattcgagg--------------------------------------------------------------ctgccgtgtgctatgatcacaccactacactcaagcctgggtgatagcatgagacc--------aaaag-aaacaaacaaacaaa--caaaaccccccaacaaaacccaaaacaagaacagcaacaaaaatatcattgtgtgaggatgga--t---tttttttcatacacttcaaccaaatataacagattaaccaaaataacagattaaatg-----aaggagaagaaaattcattaatcttctaatgagacacataagaaaaggatttacaaacatacaaaatgt-aaaaagatgcactcttctcactatactgtttactttgggaaatactgactttgcataaaaatatttctaacatgcaatgca-ttattaatattctaaatgaataaaataatttaagtgattttagtttctaatatggtaaatattaacgtatataactcacataaaattatcttcagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     195675 845 +   2037526 attatacaagaagcattcaatgtggaagtcggacctatatattttaatgtaacagcatgtgaaatagttattgatagtttcatgttccacattacaaataacctttaa----------gaagctaacacttctatcattttagtgtaatatcaaggatgaatatc--cagttttctaaaa-atgttattaaaaacattcctggcctagcgaggtgacttatacctgtaatcccagcatttt-ggaggccaaggcaggagaatcatttgagcctaggagttccacccaggagttc-------------------gaatgagacc--------cccatctctacaaaaaataaacaaaattagctgcggtggtgtttcgtgcctgtggtcacagctgctcatgaggctgaattgggaggatcacttgagcccaggaattcgagg--------------------------------------------------------------ctgccgtgtgctatgatcacaccactacactcaagcctgggtgatagcatgagacc--------aaaag-aaaaaaacaaacaaa--caaaaccccccaacaaaacccaaaacaagaacagcaacaaaaatatcattgtgtgaggatgga--t---tttttttcatacacttcaaccaaatataacagattaaccaaaataacagattaaatg-----aaggagaagaaaattcattaatcttctaatgagacacataagaaaaggatttacaaacatacaaaatgt-aaaaagaggcactcttctcactatactgtttactttgggaaatactgactttgcataaaaatatttctaacatgcaatgca-ttattaatattctaaatgaataaaataatttaagtgattttagtttctaatatggtaaatattaacgtatataactcacataaaattatcttcagag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74868002 841 + 122973662 attatacaagaagcattcaatgtggaagacggacctacatattttaatgtaacagcatgtgaaatagttattgatagtttcatgttccacattatgaataacttttaa----------gaagctaacacttctatcattttagtgtagtatcaaggatgaatatc--cagttttctaaaa-atgttattaaaaacattcctggcc-agcaaggtgacttatacctgtaatcccagcattttgggaggccaaggcaggagaatcacttgagcctaggagttccgcccaggagttc-------------------gaatgagacc--------cccatctctacaaaaaataaacaaaattagctgcggtggtgtttcgtgcctgtagtcacagctgcttatgaggctgaattgggaggaccacttgagcccaggaattcgagg--------------------------------------------------------------ctgcagtgtgctatgatcacaccactacactcaagcctgggtgacagcatgagacc--------Aaaac-aaacaaacaaacaaa--ca---------aacaaaacccaaaacaagaacagcaacaaaaatatgatcgtgtgaggatgga------tttttttcatacacttcaaccaaatataacagattaaccaaaataacagattaaatgaagaaaaggagaagaaaattcattaatcttctaatgagacacataagaaaaggatttacaaacatacaaaatgt-aaaaagatgcacacttctcactatactgtttactttgggaaatactgactttgcataaaaatatttctaacatgcaatacatttattaatattctaaatgaataaaataatttaaatgattttagtttctaatatggtaaatattaacatatacaactcacataaaattatcttcagag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30739500 849 + 172585720 attatacaagatgcattcaatgtggaagacagacctatgtgttttaatgtaacagcatgtgaaacagttattgatagtttcatgttccacattacaaataacctttaa----------gaagctaacacttctatcattttagtgtagtatcaaagatgaatatccacaattttctaaaa-atggtattgaaaacattcctggcctagtgaggtgactcacacccgtaaccccagcattttgggaggccaaggcaggagaatcgcttgagcctagaagttctgccccggagttcgagaccagcctgggcaacagaatgagacc--------cacatccctacaaaaaataaacaaaattagctgtggtggtgtttcatgcctgtggtcgcagctgctcatgaggctgaattgggaggatcacttgagtccaggaattcgagg--------------------------------------------------------------ctgcagtgcactatgatcacaccactacactcaagcctgggtgacagcatgagaccacatctccaaaac-aaacaaacaaacaaa--caaaacccccc-acaaaatccaaaacaagaatagcaacaaaaatatgattgtgtgaggatgga--t---tttttttcatacacttc------------------aaccaaaataacagattaaatgaagaaaaggagatgaaaattcattaatcttctaatgagatacataa------gatttacaaacatacaaaatgt-aaaaagatgcactcttctcactatactgtttattttgggaaatactgactttgcataaaaatatttctaacttgcaatgca-ttattaatattctaaatgaataaca-----taaataattttagtttctagtatggtaaatgttaatatatgtaactcacataaaatta-ctttggag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30036006 855 - 170955103 attatacaagatgcattcaatgtggaagacagacctatgtgttttaatgtaacagcatgtgaaacagttattgatagtttcatgttccacattacaaataacctttaa----------gaagctaacacttctatcattttagtgtagtatcaaggatgaatatccacaattttctaaaa-atggtattgaaaacattcctggcctagcaaggtgactcacacctataaccccagcattttgggaggccaaggcaggagaatcgcttgagcctaggagttctgccccagagttcgagactagcctgggcaacagaatgagacc--------cacatccctacaaaaaataaacaaaattagctgtggtggtgtttcatgcctgtggtcgcagctgctcatgaggctgaattgggaggatcacttgagtccaggaattcgagg--------------------------------------------------------------ctgcagtgcactatgatcacaccactacactcaagcctgggtgacagcatgagacctcatctccaaaac-aaacaaacaaacaaa--cacaaccccca-caaaaatccaaaacaagaacagcaacaaaaatatgattgtgtgaggatgga--t---tttttttcatacacttc------------------aaccaaaataacagattaaatgaagaaaaggagatgaaaattcattaatcttctaatgagatacataa------gatttacaaacatacaaaatgt-aaaaagatgcactcttctcactatactgtttattttgggaaatactgactttgcataaaaatatttctaacttgcaatgca-ttattaatatcctaaatgaataaaataatttaaatgattttagtttctagtatggtaaatattaacatatataactcacataaaattacctttggag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     271542 850 +   1495729 attatacaagatgcattcaatgtggaagacagacctatgtgttttaatgtaacagcatgtgaaacagttattgatagtttcatgttccacattacaaataacctttaa----------gaagctaacacttctatcattttagtgtagtatcaaagatgaaaatccacaattttctaaaa-atggtattgaaaacattcctggcctagcgaggtgactcacacctgtaaccccagcattttgggaggccaaggcaggagaattgcttgagcctaggagttctgccccggagttcgagaccagcctgggcaacagaatgagacc--------cacatctctacaaaaaataaacaaaattagctgtggtggtgtttcatgcctgtggtcgcagctgctcatgaggctgaattgggaggatcacttgagtccaggaattcgagg--------------------------------------------------------------ctgcagtgcgctatgatcacaccactacactcaagcctgggtgacagcatgagaccacatctccaaaac-aaacaaacaaacaaa--caaaacccccc-acaaaatccaaaacaagaatagcaacaaaaatatgattgtgtgaggatgga--t---tttttttcatacacttc------------------aatcaaaataacagattaaatgaagaaaaggagatgaaaattcattaatcttctaatgagatacataa------gatttacaaacatacaaaatgt-aaaaagatgcactcttctcactatactgtttattttgggaaatactgactttgcataaaaatatttctaacttgcaatgca-ttattaatattctaaatgaataaca-----taaataattttagtttctagtatggtaaatgttaatatatgtaactcacataaaattacctttggag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     380417 854 -    863181 attatacaagatgcattcaatgtggaagacagacctatgtgttttaatgtaacagcacgtgaaacagttattgatagcttcatgttccacattacaaataacctttaa----------gaagctaacacttctatcattttagtgtagtatcaaggatgaatagccacaattttctaaaa-atggtattaaaaacattcctggcctagcgaggtgactcacacctataaccccagcattttgggaggccaaggcaggagaatcgcttgagcctaggagttctgccccagagttcgagactagcctgggcaacagaatgagacc--------cacatccctacaaaaaataaa-aaaattagctgtggtggtgtttcatgcctgtggtcgcagctgctcatgaggctgaattgggaggatcacttgagtccaggaattcgagg--------------------------------------------------------------ctgcagtgcgctatgatcacaccacgacactcaagcctgggtgacagcatgagaccacatctccaaaac-aaacaaacaaacaaa--caaaacccccc-acaaaatccaaaacaagaatagcaacaaaaatatgattgtgtgaggatgga--t---tttttttcatatacttc------------------aaccaaaataacagattaaatgaagaaaaggagatgaaaattcattaatcttccaatgagatacataa------gatttacaaacaaacaaaatgt-aaaaagatgcactcttctcactatactgtttattttgggaaatactgactttgcataaaaatatttctaacttgcaatgca-ttattaatatcctaaatgaataaaataatttaaatgattttagtttctagtatggtaaatattaacatatataactcacataaaattacctttggag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29535800 834 -  71996105 tttatacaagatgcattcaatgtggaagacagacctatgtgttttaatgtaacagcacgtgaaacagttattgatagcttcatgttccacattacaaataacctttaa----------gaagctaacacttctatcattttagtgtagtatcaaggatgaatatccacaattttctaaaa-atggtattgaaaacattcctggcctagcgaggtgactcacagctataaccccagcattttgggaggccaaggcaggagaatcgcttgagcctaggagttctgccccagaattcgagactagcctgggcaacagaataagacc--------cacatctctataaaaaataaacaaaattagctgtggtggtgtttcatgtctgtggtcgcagctgctcatgaggctgaattgggaggatcacttgagtccaggaattcgagg--------------------------------------------------------------ctgcagtgcgctatgatcacaccactacactcaagcctgggtgacagcatgagaccacatctctaaaac-aaacaaacaaacaaa--caaaacccccc-acaaaatccaaaacaagaatagcaacaaaaatatgattgtgtgaggatgga-tt---tttttttcatacacttc------------------aaccaaaataacagattaaatgaagaaaaggagatgaaaattcattaatcttctaatgagatacgtaa------gatttacaaacatacaaaatgt-gaaaagatgcactcttctcactatactgtttattttgggaaatactgactttgcataaaaatatttctaccttgcaatgca-ttattaatattctaaatgaataaaataaaataaatgattttagtttctc----------------------taactcacataaaattacctttggag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     207578 853 -    735854 attatacaagatgcattcaatgtggaagacagacctatgtgttttaatgtaacagcatgtgaaacagttattgatagtttcatgttccacattacaaataacctttaa----------gaagctaacacttctatcattttagtgtagtatcaaggatgaatatccacaattttctaaaa-atggtattaaaaacattcctggcctagcgaggtgactcacacctgtaaccccagcattttgggaagccaaggcaggagaatcgcttgagcctaggagttctgccctggagttcgagaccagcctgggcaacagaatgagacc--------cacatccctacaaaaaataaacaaaattagctgtggtggtgtttcatgcctgtggtcgcagctgctcatgaggctgaattgggaggatcacttgagtccaggaattcgagg--------------------------------------------------------------ctgcagtgcgctatgatcacaccactacactcgagcctgggtgacagcatgagaccacatctccaaaac-aaacaaacaaacaaa--c--aacccccc-acaaaatccaaaacaagaatagcaacaaaaatatgat--tgtgaggatggattt---tttttttcatacacttc------------------aacgaaaataacagattaaatgaagaaaaggagatgaaaattcattaatcttctaatgagatacataa------gatttacaaacatacaaaatgt-aaaaagatgcactcttctcactatactgtttattttgggaaatactgactttgcataaaaatatttctaacttgcaatgca-ttattaatattctaaatgaataaaataatttaaattattttagtttctagtatggtaaatattaacatatgtaactcacataaaattacctttggag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     173050 850 -   1829203 attataccagatgcattcaatgtggaagacagccctatgtgttttaatgtaacagcatgtgaaacagttattgatagtttcatgttccacattacaaataacctttaa----------gaagctaacacttctatcattttagtgtagtatcaaggatgaatatccacaattttctaaaa-atggtatt-aaaacattcccggcctagcgaggtgactcacacctgtaaccccagcattttgggaggccaaggcaggagaatcgcttgagcctaggagttctgccccagagttcgagaccagcctgggcaacagaatgagacc--------cacatctctacaaaaaataaacaaaattagctgtggtggtgtttcatgcctgtggtcacagctgctcatgaggctgagctgggaggatcacttgagtccaggaattcgagg--------------------------------------------------------------ctgcagtgcgctatgatcacaccactacactcaagcctgggtgacagcatgagaccacatctccaaaac-aaacaaacaaacaa------aacccccc-acaaaatccagaacaagaatagcaacaaaaatatgattgtgtgaggatgga--t---tttttttcatacacttc------------------aaccaaaataacagattaaatgaagaaaaggagatgaaaattcattaatcttctaatgagatacataa------gatttacaaacatacaaaatgt-aaaaagatgcactcttctcactatactgtttattttgggaaatactgactttgcataaaaatatttctaacttgcaatgca-ttattaatattctaaatgaataaaataatttaaatgattttagtttctagtatggtaaatattaacatatgtaactcacataaaattacctttggag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30345278 906 + 171630274 attatagaagatgcaatcaatgtggaagatggacctgtggatcttaatgtaatggcatgtgaaatagtaattgctagtttaatgttccacattacaaataacctttaa----------gaagttaacacttctgttattttagtatattatcaaggatgaatatcagcaattttctaaaatatgttatttaaaatattcctGGCCTAGTAAAgtgactcacacctgtaatcccagtgttctggaaggccagggtagaagaatcacttgagcccagaagttcagctcaggaatttgagaccagcctgggcaactgagtaagacccccccg--ccaatctctacaa-----aaatagaattagctggggtggtgttt--------------cagctgctcgtgaagctgaattgggaggatccctcgaacccaggaatttgaggctgcagtgcaccatgatcacaccactgcactcTGCAGTGCACCATGATCACACCACTGCACTctgcagtgcactatgatcacaccactgcactccggcctgggtgacaggaagagaccgtgtctccaaaag-aaaaaaacaaaCACA---ACAACC--CC-ACAAAACCCAAAACAAGAACAGCAACAAAAATACGATtgtgtgacgatgga--a---tttttttcatatatgtc------------------aactaaaataacagattagatgaagaaaaagagatgaaaattcattaagcttctaatgagacacgtaagaaaagaatttacaaacatataaaatgtaaaaaaggtgcacttttctcactatactgtttattttgggaaataatgacttcgcataaaaatatttctaacatgtaacgta----ttaatattctaaatgaataaaatattttaaatagttttaatttctaatacagtaaatattaccatatataactcacataaaattatcttctgcg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           169106 862 +    515838 attatagaagatgcattcaatgtggaagatggacctatgtatcttaatgtaatggcatgtgaaatcgttattgatggtttaatgttccacattacaaacaacctttaacact--tgttaaagctaacactcttcttattttagtatagtatcaaggatgaatatccgcaattttctaaaatatattattaaaaATGTTTCTGTCCTAGCAAAgtgactcacacctgtaatccccgtattttgggaggccaaggtaggagaatcacttgagtccaggagttcagctcaggagtttgagaccagcctgggcaactgagtaagacacgcccagccccatctctacaa-----aaacaacattagctggggtggtgttt--------------cagctgcttgtgaagctgagttgagaggatcccttgaacccaggaattcgagg--------------------------------------------------------------ctgcagtgcgctatgatcacaccactgcacttcagcctgaatgacaggaagagaccgtgtctccaaaagaaaaaaaacaaacacaaacaaaaCCCGCC-ACAAAACTCAAAACAAGAACAGCAACAAAAATGTGATtgtgtgaggatgga--cttttttttttcctatacttc------------------aactaaaataacagattagatgaagaaaaggagatgaaaattcattaatcttctaatgagacacatgagaaaaggatctgcaaacatataaaacgt-aaaaaggtgcacccttctcactatactgtttattttgggaaataatgacttcgcataaaaatatttctaacatgtaatgtg----ttactattctaaatgaataaagtattttaaatagtgttaatttctaatacggtaaatattagcatatataactcacataaaattatcttcggag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     803150 858 -   1771730 attatagaagatgcattcaatgtggaagatggacctatgtatcttaatgtaatgacacatgaaatagttattgatagtttaatgttccacattacaaataacctttaacacttctgttaaagctaacacttctcttattttagtatagtatcaaggatgaatatccacaattttctaaaatatattattaaaaatatgcctggcctagcaaagtgactcacacctgtaattccagtattttgggaggccaaggtaggagaataacttgagcccaggagttcagctcaggagtttgagacaagcctgggcaactgagtaagacccctcc---tccatctctacaa-----aaacaaaattagctggggtggtgttt--------------cagctgcttgtgaagctgagttgggaggatcccctgaacccaggaattcgagg--------------------------------------------------------------ctgcagtgccctatgatcacaccactgtactccagcctgggtgacaggaagagaccgt-tctccaaaag-gaaaaaacaaacacaaacaaaacccccc-acaaaacccaaaacaagagcagcaacaaaaatatgattgtgtgaggatgga--cttttttttttcatatatttc------------------aactaaaataacagattagatgaagaaaaggaggtgaaaattcattaatcttctaatgagacacataagaaaaagatttacaaacatataaaatgt--taaaggtgcactcttgtcactatactgtttattttgggaaataatgacttcgcataaaaatatttctaacatgtaatgtg----ttaatattcttaatgaataacatattttaaatagttttaatttctaataccgtaaatattagcatatataactcacataaaattaccttcaaaa
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I
e aotNan1.NW_018496904v1     282266 3780 -    383796 I

a score=1227015.000000
s hg38.chr6_GL000254v2_alt  1385986 122 +   4827813 tcctcactaattcctaagagcatgcagagat-ctgaaaccaaaacgtttgagaaacgatgACGTAACTCCTAGCTCTGGATTAAGGGAGAATGTGTGACAAAGAGCATTTGGTATAGGAGGAG
s panTro5.chr6             30259387 123 + 175400573 tcctcactaattcctaagagcatgcagagatcctgaaaccaaaacatttgagaaacgatgACGTAACTCCTAGCTCTGGATTAAGGGAGAATGTGTGACAAAGAGCATTTGGTATAGGAGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30489913 123 + 173848474 tcctcactaattcctaagagcatgcagagatcctgaaaccaaaacatttgagaaacgatgACGTAACTCCTAGCTCTGGATTAAGGGAGAATGTGTGACAAAGAGCATTTGGTATAGGAGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     196520 122 +   2037526 tcctcactaattcctaagagcatgcagagatcctgaaaccaaaacgtttgagaaacgatgACGTAACTCCTAGCTCTGGATTAAGGGAGAATGTGTGACAAACAGCATTTGGTATAGGA-GAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74868843 123 + 122973662 tcctcactaattcctaagagcatgcagagatcctgaaaccaaaacgtttgagaaacgatgACGTAACTCCTAGCTCTGGATTAAGGGAGAATGTGTGACAAAGAGCATTTGGTATAGAAGGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30740349 123 + 172585720 tcctcattaattcctaagagcatgcagagatcctcaaaccaaaacgtatgagaaacgatgACATAACTTCTAGCTCTGGATTAAGGGAGAATGTGTGACAAAGAGCATTTGGCATAGGAGGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30036861 123 - 170955103 tcctcattaattcctaagagcatgcagagatcctgaaaccaaaacgtttgagaaacgatgATGTAACTCCTAGCTCTGGATTAAGGGAGAATGTGTGACAAAGAGCATTTGGTATAGGAGGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     272392 123 +   1495729 tcctcattaattcctaagagcatgcagagatcctcaaaccaaaatgtatgagaaacgatgACATAACTTCTAGCTCTGGATTAAGGGAGAATGTGTGACAAAGAGCATTTGGCATAGGAGGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     381271 123 -    863181 tcctcattaattcctaagagcatgcagagatcctgaaaccaaaacatataagaaacgatgACATAACTCCTAGCTCTGGATTAAGGGAGAATGTGTGACAAAGAGCATTTGCCATAGGAGGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29536634 123 -  71996105 tcctcattaattcctaagagcatgcaaagatcctgaaaccaaaacgtttgagaaacgatgACATAACTCCTAGCTCCGGATTAAGGGAGAATGTGTGACAAACAGCATTTGGTATAGGAGGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     208431 123 -    735854 tcctcattaattcctaagagcatgcagagatcctgaaaccaaaacgtttgagaaacgatgACGTAACTCCTAGCTCTGGATTAAGGGAGAATGTGTGACAAAGAGCATTTGGCATAGGAGGAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     173900 123 -   1829203 tcctcattaattcctaagagcatgcagagatcctgaaaccaaaacgtttgagaaATGATGATATAACTCCTAGCTCTGGATTAAGGGAGAATGTGTGACAAAGAGCATTTGGTATAGGAGGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30346184 120 + 171630274 ttctcactaatccctaagagcatgcagagatcgtgaaactaaaacgtttgagaagcgatgAC-TAACTCCTAGCTCTGGATTAAGGGAGAATGTGTGAC--AGAGCATTTGGTTTAGGAGGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           169968 118 +    515838 tcctcactaattcctaagagcatgcagagatcctgaaactaaaacgtttgagaaacgatgAC-GAACTCCTAGCTCTGGATTAAGGGAGAATGTGTGAC----AGCATTTGGTTTAGGAGGAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     804008 120 -   1771730 tcctcactaattcctaagagcatgcagagatcctgaaactaaaacg-ttgagaaACAATGACATAACTCCTAGCTCTGGATTAAGGGAGAATGTGTGAC--AGAGCATTTGGTTTAGGAGGAG
i cebCap1.NW_016107755v1   C 0 I 3295
s aotNan1.NW_018496904v1     286046 122 -    383796 tcctcactaattcctaagagcatgcagagatcctgaaactaaaacgtttgagaaacgatgAC-TAACTCCTAGCTCTGGATTAAGGGAGAATGTGTGACAAAGAGCATTTGGTTTAGGAGGAG
i aotNan1.NW_018496904v1   I 3780 I 3247
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464   5 +  18854210 I

a score=23116.000000
s hg38.chr6_GL000254v2_alt  1386108 5 +   4827813 AAGGG-
s panTro5.chr6             30259510 5 + 175400573 AAGGG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30490036 5 + 173848474 AAGGG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     196642 5 +   2037526 AAGGG-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74868966 5 + 122973662 AGGGG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30740472 5 + 172585720 AGGGG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30036984 5 - 170955103 AGGGG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     272515 5 +   1495729 AGGGG-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     381394 5 -    863181 AGGGG-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29536757 5 -  71996105 AGGGG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     208554 5 -    735854 AGGGG-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     174023 5 -   1829203 AGGGG-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30346304 5 + 171630274 -GGGGA
i calJac3.chr4             C 0 I 3606
s saiBol1.JH378341           170086 5 +    515838 -GCGGG
i saiBol1.JH378341         C 0 I 3298
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           213464 5 +  18854210 I
e aotNan1.NW_018496904v1     286168 3247 -    383796 I
e cebCap1.NW_016107755v1     804128 3295 -   1771730 I

a score=2662245.000000
s hg38.chr6_GL000254v2_alt  1386113 262 +   4827813 CCAGGCCTTATCCTGTCTCTAGGACTGT-GGCAAGGGCTTTGTGTGAC------CAGGTCAGCCTAGGCTCAGGCTTAGGTCTGGCCCTCAGCCCCCATCTT-----------GTTCATTGT-TTTGTTTTGACAGAAGACTATGCCTGTTCTTCTTCTTGTATCTGAGTTCTGGTCTCCAAGTCTCC-------AATCTCC-TCTAGGACAGCCGTAGGAGTTACTTTTTCTGTCATTGTCCTCACAAGCCCTGGGGTGGCCCC-TGCACACAGGAGTCTCTGTGGTAT
s panTro5.chr6             30259515 261 + 175400573 CCAGGCCTTATCCTGTCTCTAGGACTGT-GGCAAGGGCTTTGTGTGAC------CAGGTCAGCCTAGGCTCAGGCTTGGGTCTGGCCCTCAGCCCCCATCTT-----------GTTCATTG--TTTGTTTTGACAGAAGACTATGCCTGTTCTTGTTCTTCTATCTGAGTTCTGGTCTCCAAGTCTCC-------AATCTCC-TCTAGGACAGCCGTAGGAGTTACTTTTTCTGTCATTGTCCTCACAAGCCCTGGGGTGGCCCC-TGCACACAGGAGTCTCTGTGGTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30490041 261 + 173848474 CCAGGCCTTATCCTGTCTCTAGGACTGT-GGCAAGGGCTTTGTGTGAC------CAGGTCAGCCTAGGCTCAGGCTTGGGTCTGGCCCTCAGCCCCCATCTT-----------GTTCATTG--TTTGTTTTGACAGAAGACTATGCCTGTTCTTGTTCTTCTATCTGAGTTCTGGTCTCCAAGTCTCC-------AATCTCC-TCTAGGACAGCCGTAGGAGTTACTTTTTCTGTCATTGTCCTCACAAGCCCTGGGGTGGCCCC-TGCACACAGGAGTCTCTGTGGTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     196647 262 +   2037526 CCAGGCCTTATCCTGTCTCTAGGACTGT-GGCAAGGGCTTTGTGTGAC------CAGGTCAGCCTAGGCTCAGGCTTGGGTCTGGCCCTCAGCCCCCATCTT-----------GTTCATTGT-TTTGTTTTGACAGAAGACTATGCCTGTTCTTGTTCTTGTATCTGAGTTCTGGTCTCCAAGTCTCC-------AATCTCC-TCTAGGACAGCCATAGGAGTTACTTTTTCTGTCATTGTCCTCACAAGCCCTGGGGTGGCCCC-TGCACACAGGAGTCTCTGTGCTAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74868971 262 + 122973662 CCAGGCCTTATCCTGTCTCTAGGACTGT-GGCAAGGGCTTTGTGTGAC------CAGGTCAGCCTAGGCTCAGGCTTGGGTCTGGCCCTCAGCCCCCATCTT-----------TTTCATTGT-TTTGTTTTGACAGAAGACTATGCCTGTTCTTGTTCTTGTATCTGAGTTCTGGTCTCCATGTCTCC-------AATCTCC-TCTAGGACAGCTGTAGGAGTTCATTTTTCTGTCATTGTCCTCACAAGGCCTGGGGTGGCCCC-TGCACACAGGAGTCTCTGCGGTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30740477 268 + 172585720 CCAGGCCTTATCCTGTCTCTAGGACTGT-GGCAAGGGCTTTGTGTGACCTAAGTCAGGTCAACCTAGGCTCAGGCTTGGGTCTGGCCCTCAGCCCCCATCTT-----------TTTCATTGT-TTTGTTTTGACAGAAGTCCATGCCTGTTCTTGTTCTTGTATCTGAGTCCTGGTCTCCAAGTCTCC-------AATCTCC-TCTGTCACAGCAGTAGGAGTTACTTTTTCTGCCATTGTCCTCACAAGGCCTGGGGTAGCCCC-TGCACACAGGAGTCTCTGTGGTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30036989 268 - 170955103 CCAGGCCTTATCCTGTCTCTAGGACTGT-GGCAAGGGCTTTGCGTGACCTAAGTCAGGTCAGCCTAGGCTCAGGTTTGCGTCTGGCCCTCAGCCCCCATCTT-----------TTTCATTGT-TTTGTTTTGACAGAACTCTATGCCTGTTCTTGTTCTTGTATCTGAGTCCTGGTCTCCAAGTCTCC-------AATCTCC-TCTGTCACAGCAGTAGGAGTTACTTTTTCTGTCATTGTCCTCACAAGGCCTGGGGTAGCCCC-TGCACACAGGAGTCTCTGTGGTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     272520 268 +   1495729 CCAGGCCTTATCTTGTCTCTAGGACTGT-GGCAAGGGCTTTGTGTGACCTAAGTCAGGTCAACCTAGGCTCAGGCTTGGGTCTGGCCCTCAGTCCCCATCTT-----------TTTCATTGT-TTTGTTTTGACAGAAGTCCATGCCTGTTCTTGTTCTTGTATCTGAGTCCTGGTCTCCAAGTCTCC-------AATCTCC-TCTGTCACAGCAGTAGGAGTTACTTTTTCTGTCATTGTCCTCACAAGGCCTGGGGTAGCCCC-TGCACACAGGAGTCTCTGTGGTAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     381399 269 -    863181 CCAGGCCTTATCCTGTCTCTAGGACTGT-GGCAAGGGCTTTGTGTGACCTAAGTCAGGTCAACCTAGGCTCAGGCTTGGGTCTGGCCCTCAGCCCCCATCTT-----------TTTCATTGT-TTTGTTTTGACAGAAGTCTATGCCTGTTCTTGTTCTTGTATCTGAGTCCTGGTCTCCAAGTCTCC-------AATCTCC-TCTGTCACAGCAGTAGGAGTTACTTTTTCTGTCATTGTCCTCACAAGGCCTGGGGTAGCCCCTTGCACACAGACATCTCTGTGGTAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29536762 268 -  71996105 CCAGGCCTTATCCTGTCTCTAGGACTGT-GGCAAGGGCTTTGCGTGACCTAAGTCAGGTCAGCCTAGGCTCAGGCTTGCATCTGGCCCTCAGCCCCCAtctt-----------tttcattgt-tttgttttgacagaagtctttgcctgttcttgttcttgtatctGAGTCCTGGTCTCCAAGTCTCC-------AATCTCC-TCTGTCACAGCAGTAGGAGTTACTTTTTCTGTCATTGTCCTCACAAGGCCTGGGGTAGCCCC-TGCACACAGGAGTCTCTGTGGTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     208559 268 -    735854 CCAGGCCTTATCCTGTCTCTAGGACTGT-GGCAAGGGCTCTGCGTGACCTAGGTCAGGTCAGCGTAGGCTCAGGCGTGGGTCCGGCCCTCAGCCCCCATCTT-----------TTTCATTGT-TTTGTTTTCACAGAAGTCTATGCCTGTTCTTGTTCTTGTATCTGAGTCCTGGTCTCCAAGTCTCC-------AATCTCC-TCTGTCACAGCAGTAGGAGTTACTTTTTCTGTCATTGTCCTCACAAGGCCTGGGGTAGCCCC-TGCACACAGGAGTCTCTGTGGTAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     174028 268 -   1829203 CCAGGCCTTACCCTGTCTCTAGGACTGT-GGCAAGGGCTTTGCGTGACCTAAGTCAGGTCAGCCTAGGCTCAGGCTTGGGTCTGGCCCTCCGCCCCCATCTT-----------TTTCATTGT-TTTGTTTTGACAGAAGTCTATGCCTATTCTTGTTCTTATATCTGAGTCCTGGTCTCCAAGTCTCC-------AATCTCC-TCTGTTACAGCAGTAGGAGTTACTTTTTCTGTCATTGTCCTCACAAGGCCTGGGGTAGCCCC-TGCACACAGGAGTCTCTGTGGTAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30349915 226 + 171630274 CCAGGCCTTATCCTGTCCCTAGGAC---------------TGTGTGGC------CAGGTCAGCCTATGCTCAGGAATGGATCTGGCCCTCAGCCCCCATGTT-----------TTTCATTAT-TT----------------------TGCTCTTGTTCTTGTGACTGAGTTTTGGTCTCAAAGTCTCC-------AATCTCC-TTTAGGGCAGCAGTAGGAGTTACTTTTCCTGCCATTGTCCTCACAAGACCTGGGGTGGCCCC-TGTACACAGGAATCTCTGTGGTAT
i calJac3.chr4             I 3606 I 1075
s saiBol1.JH378341           173389 262 +    515838 CCAGGCCTTATCCTGTCCCTAGGACTGT-GGCAAGGGCTTTGTGTGGC------CAGGTCAGCCTAGGCTCAGGCGTGGGTCTGGCCCTCAGCCCCCACCTT-----------TTGCATTGT-TTTGTTTTGACAGAGGACTATGCCTGTTCTTGTTCTCTTGTCTGAGTTTTGGTCTCGAAGTCTCC-------AATCTCC-CTTAGGGCAGCAGAAGGAGTTATTTTTGCTGCCATTGTCCTCACAAGACCTGGGGTGGCCCC-TGTTCACAGGAATCTCTGTGATAT
i saiBol1.JH378341         I 3298 I 1077
s cebCap1.NW_016107755v1     807423 260 -   1771730 CCAGGCCTTATCCTGTCCCTAGGACTGT-GGTAAGGGTTTTGTGTGGC------CAGGTCAGCCTAGGCTCAGGCGTGGGTCTGGCCCTCAGCCCCCACCTT-----------TTTCATTGT-TT-GTTTTGACAGAGGACTACACCTGTTC-TATTCTTGTGTCTGAGTTTTGGTCTCGAAGTCTCA-------AGTCTCC-TTTAGGGCAGCAGTAGGAGTTATTTTTTCTGCCATTGTCCTCACCAGACATGGGGTGGCCCC-AGTACACAGGAATCTCTGTGGTAT
i cebCap1.NW_016107755v1   I 3295 C 0
s aotNan1.NW_018496904v1     289415 262 -    383796 CCAGGCCTTATCCTGTCCCTAGGACTGT-GGCAAGGGCTTTGTGTGGC------CAGGTCAGCCTAGGCTCAGGTATGGATCTGGCCCTTAGCCCCCATTTT-----------TTTCATTGT-TTTCTTTTGACAGACGACTATGCCTGTTCTTGTTCTTGTGTCTGAGTTTTGGTCTCGAAGTCTCC-------AATCTCC-TTTAGGGCAGCAGTAGGAGTTATTTTTTCTGCCATTGTCCTCATAAGACCTGGGGTGGCCCC-TGTACACAGGAATCTCTGTGGTAT
i aotNan1.NW_018496904v1   I 3247 C 0
s otoGar3.GL873550           213469 268 +  18854210 CCAGGTATTGTCCTGTCTCCAGGACCATGGGCAAAGGCTTTGTGTAGC------CAGGTCATCCTAAATTCAGGCCTGCATCCAGCCCTCAGCCCTCATATTGTAGGTGTTTATTTACTTATGTTTGTTTTGATAGAGGACTATGTCTGTTCTTGT--------CCAAGTTATGGTCTC--ATTCTCCTCTGGGTATTCCCCATCTCTGACAGCAGAAGTCATTTCTTTT--TGTCATTTTTC---CAAGGCCCAGGGTGGCCCC-TGCACATAGGAGTCTCTTTGATAT
i otoGar3.GL873550         I 5 C 0
e mm10.chr17               58018469 2227 -  94987271 I

a score=-4337.000000
s hg38.chr6_GL000254v2_alt  1386375 2 +   4827813 C--G
s panTro5.chr6             30259776 4 + 175400573 CAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30490302 4 + 173848474 CAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     196909 4 +   2037526 CAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74869233 4 + 122973662 CAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30740745 4 + 172585720 CGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30037257 4 - 170955103 CGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     272788 4 +   1495729 CGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     381668 4 -    863181 CAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29537030 4 -  71996105 CAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     208827 4 -    735854 CGAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     174296 4 -   1829203 CAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30351216 2 + 171630274 CA--
i calJac3.chr4             I 1075 C 0
s saiBol1.JH378341           174728 2 +    515838 CA--
i saiBol1.JH378341         I 1077 C 0
s cebCap1.NW_016107755v1     807683 2 -   1771730 CA--
i cebCap1.NW_016107755v1   C 0 I 1082
s aotNan1.NW_018496904v1     289677 2 -    383796 CA--
i aotNan1.NW_018496904v1   C 0 I 2
s otoGar3.GL873550           213737 2 +  18854210 CA--
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I

a score=56042.000000
s hg38.chr6_GL000254v2_alt  1386377 7 +   4827813 AGACCAA
s panTro5.chr6             30259780 7 + 175400573 AGACCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30490306 7 + 173848474 AGACCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     196913 7 +   2037526 AGACCAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74869237 7 + 122973662 AGACCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30740749 5 + 172585720 --ACCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30037261 5 - 170955103 --ACCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     272792 5 +   1495729 --ACCAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     381672 7 -    863181 ACACCAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29537034 7 -  71996105 ACACCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     208831 5 -    735854 --ACCAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     174300 7 -   1829203 ACACCAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30351218 7 + 171630274 AGACCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           174730 7 +    515838 AGACCAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     808767 7 -   1771730 AGACCAG
i cebCap1.NW_016107755v1   I 1082 C 0
s aotNan1.NW_018496904v1     289681 7 -    383796 AGACCAG
i aotNan1.NW_018496904v1   I 2 I 1104
s otoGar3.GL873550           213739 7 +  18854210 AGAGAAA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I

a score=1185521.000000
s hg38.chr6_GL000254v2_alt  1386384 113 +   4827813 TTTTTAGACCCACCCAGCTCTTGTCCTT---CCAGGGCTGTTTCCTGGACTATTCTTCGCATCTTTT-CCCCAATCTTTTTCAGGAAATCAAATTCTGGAATTAGAGATCATATCTC-----------------------------------------------------------------------------
s panTro5.chr6             30259787 113 + 175400573 TTTTTAGACCCACCCAGCTCTTGTCCTT---CCAGGGCTGTTTCCTGGACTGTTCTTCCCATCTTTT-CCCCAATCTTTTTCAGGAAATCAAATTCTGGAATTAAAGATCATATCTC-----------------------------------------------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30490313 113 + 173848474 TTTTTAGACCCACCCAGCTCTTGTCCTT---CCAGGGCTGTTTCCTGGACTGTTCTTCCCATCTTTT-CCCCAATCTTTTTCAGGAAATCAAATTCTGGAATTAAAGATCATATCTC-----------------------------------------------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     196920 113 +   2037526 TTTTTAGACCCACCCAGCTCTTGTCCTT---CCAGGGCTGTTTCCTGGACTGTTCTTCCCATCTTTT-CCCCAATCTTTTTCAGGAAATCAAATTCTGGAATTAGAGATCATATCTC-----------------------------------------------------------------------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74869244 116 + 122973662 TTTTTAGACCCATCCAGCTCTTGTCCTTCCACCAGGGCTGTTTCCTGGACTGTTCTTCCCATCTTTT-CCCCAATCTTTTTCAGGAAATCAAATTCTGGAATTAGAGACCAGATCTC-----------------------------------------------------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30740754 113 + 172585720 TTTTTAGACCCATCCAGCTCTTGTCCTT---CCAAAGCTGTTTCCTGGATTGTTCTTTCCATCTTTT-CCCCTATCTTTTTCAGGAAATCAAATTCTGGAATTAGAGACCAGATCCC-----------------------------------------------------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30037266 113 - 170955103 TTTTTAGACCCATCCAGCTCTTGTCCTT---CCAAAGCTGTTTCCTGGATTGTTCTTTCCATCTTTT-CCCCAATCTTTTTCAGGAAATCAAATTCTGGAATTAGAGACCAGATCCT-----------------------------------------------------------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     272797 113 +   1495729 TTTTTAGATCCATCCAGCTCTTGTCCTT---CCAAAGCTGTTTCCTGGATTGTTCTTTCTATCTTTT-CCCCTATCTTTTTCAGGAAATCAAATTCTGGAATTAGAGACCAGATCCC-----------------------------------------------------------------------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     381679 113 -    863181 TTTTTAGACCCATCCAGCTCTTGTCCTT---CCAAAGCTGTTTCCTGGATTGTTCTTTCCATCTTTT-CCCCAATCTTTTTCAGGAAATCAAATTCTGGAATTAGAGACCAGATCCC-----------------------------------------------------------------------------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29537041 112 -  71996105 TTTTTAGATCCATCCAGCTCTTGTCCTT---CCAAAGCTGTTTCCTGGATTGTTC-TTCCATCTTTT-CCCCAATCTTTTTCAGGAAATCAAATTCTGGAATTAGAGACCAGATCCC-----------------------------------------------------------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     208836 113 -    735854 TTTTTAGATCCATCCAGCTCTTGTCCTT---CCAAAGCTGTTTCTTGGATTGTTCTTTCCATCTTTT-CCCCTATCTTTTTCAGGAAATCAAATTCTGGAATTAGAGACCAGATCCC-----------------------------------------------------------------------------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     174307 113 -   1829203 TTTTTAGACCCATCCAGCTCTTGTCCTT---CCAAAGCTGTTTCCTGGATTGTTCTTTCCATCTTTT-CCCCAATCTTTTTCAGGAAATCAAATTCTGGAATTAGAGACCAGATCCC-----------------------------------------------------------------------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30351225 113 + 171630274 TTTTTAGACCCATCTGGCTCTTTTCCTT---CCAGGGCTATTTCCTGGATTGTTCTTTCCATCTTTT-CCCCAATCTTTTTCAGGAAACCAAATTCTGGAATTAGAGACCAGATCCC-----------------------------------------------------------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           174737 113 +    515838 TTTTTAGACCCATCCGGCTCTTTTCCTT---CCAGGGCTGTTTCCTGGATTGTTCTTTCCATCTTTT-CCCCAATCTTTTTCAGGAAACCAAATTCTGGAATTAGAGACCAGATCCC-----------------------------------------------------------------------------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     808774 113 -   1771730 TTTTTAGACCCATCTGGCTCTTTTTCTT---CCAGGGCTGTTTCCTGGATTGTTCTTTCCATCTTTT-CCCCAATCTTTTTCAGGAAACCAAATTCTGGAATTAGAGACCAGATACC-----------------------------------------------------------------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     290792 114 -    383796 TTTTTAGACCCATCTGGCTATTTTCCTT---CCAGGGCTGTTTCCTGGATTGTTCTTTCCATCTTTTCCCCCAATCTTTTTCAGGAAACCAAATTCTGGAATTAGAGACCAGATCCC-----------------------------------------------------------------------------
i aotNan1.NW_018496904v1   I 1104 C 0
s otoGar3.GL873550           213746 186 +  18854210 TTTTCGGACCTATCCAGCTCTTAT-CTT---CCAGGGATGTTTCCTGGATCATTCTTTCGATCTTTT-CCCT--TCTTTCTAAAGGAACCGGATTTTGGAATTAAAGAGTA-ATCCCAGAGtttctttctttcttttttttgaaacagagtcttaagctgtcctcctgggtagagtgccgtggcatcacagctc
i otoGar3.GL873550         C 0 I 208
e mm10.chr17               58018469 2227 -  94987271 I

a score=3657460.000000
s hg38.chr6_GL000254v2_alt  1386497 369 +   4827813 GGTTTCTCACCTTAGATAAACTCCTGTTAGGTTTCTAACAGGAATTTATTTTTGGCTCACCTACCCTCTCTCCCTGCCTTTGGCTGTAATAATCCTAGT----GCTGGCTCAAATCCAAACTCATGGATGTCT-----AGACTCTAATTTAATTCACAGT-TGGTTGG-AAAATAGGGTCCATAAGCCTAGGATCAT----------TTTTTTTTTTCTGAAAAGGGAACTATAAT----TGTCTGCTGTGGTATAT--GAGGATTGGTGTGGGAGGGAGGCGAGAACAGCATT---------TGTGAGAAAAGTACAGGCAGCACTGATGTCAACATGAGTGGTTGTTTCACtgtagctgccacaaaacagcatgtggtctgcagctacattaataaagatact
s panTro5.chr6             30259900 369 + 175400573 GGTTTCTCACCTTAGATAAACTCCTGTTAGGTTTCTAACAGGAATTTATTTTTGGCTCACCTACCCTCTCTCCCTGCCTTTGGCTGTAATAATCCTAGT----GCTGGCTCAAATCCAAACTCTTGGATGTCT-----AGACTCTAATTTAATTCACAGT-TGGTTGG-AAAATAGGGTCCATAAGCCTAGGATCAT----------TTTTTTTTTTCTGAAAAGGGAACTATAAT----TGTCTGCTGTGGTATAT--GAGGATTGGTGTGGGAGGGAGGCGAGAACAGCATT---------TGTGAGAAAAGTACAGGTGGCATTGATGtcaacatgagcggttgtttcactgtagctgccacaaaacagcatgtggtctgcagctacattaataaagatact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30490426 368 + 173848474 GGTTTCTCACCTTAGATAAACTCCTGTTAGGTTTCTAACAGGAATTTATTTTTGGCTCACCTACCCTCTCTCCCTGCCTTTGGCTGTAATAATCCTAGT----GCTGTCTCAAATCCAAACTCTTGGATGTCT-----AGACTCTAATTTAATTCACAGT-TGGTTGG-AAAATAGGGTCCATAAGCCTAGGATCA-----------TTTTTTTTTTCTGAAAAGGGAACTATAAT----TGTCTGCTGTGGTATAT--GAGGATTGGTGTGGGAGGGAGGCGAGAACAGCATT---------TGTGAGAAAAGTACAGGTGGCATTGATGtcaacatgagcggttgtttcactgtagctgccacaaaacagcatgcggtctgcagctacattaataaagatact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     197033 369 +   2037526 GGTTTCTCACCTTAGATAAACTCCTGTTAGGTTTCTAACAGGAATTTATTTTTGGCTCACCTACCCTCTCTCCCTGCCTTTGGCTGTAATAATCCTAGT----GCTGGCTCAAATCCAAACTCATGGATGTCT-----AGACTCTAATTTAATTCACAGT-TGGTTGG-AAAATAGGGTCCATAAGCCTAGGATCAT----------TTTTTTTTTTCTGAAAAGGGAACTATAAT----TGTCTGCTGTGGTATAT--gaggattggtgtgggagggaggcgagaacagcatt---------tgtgagaaaagtacaggtggcattgatgtcaacatgagcagttgttccactgtagctgccacaaaacagcatgtggtctgcagctacattaataaagatact
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74869360 366 + 122973662 GGTTTCTCACCTTAGATAAACTCCTGTTAGGTTTCTAACAGGAATTTATTTTTGGCTCA-CTACCC-CTCTCCCTGCCTTTGGCTGTAATAATCCTAGT----GCTGGCTCACATCCAAACTCATGGATGTCT-----AGACTCTAATTTAATTCACAGT-TGGTTGG-AAAATAGGGTCCATAAGCCTAGGATCA-----------TTTTTTTTTTCTGAAAAGGGAACTATAAT----TGTCTGCTGTGGTATAT--GAGGGTTGGTGTGCgagggaggcgagaacagcatt---------tgtgagaaaagtacatgcggcattgatgtcaacatgagcggttgtttcactgtagctgccacaaaacagcatgtggtctgcagctacattaataaagatact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30740867 370 + 172585720 GGTTTCTCACCTTAGATAAACTCCTGTTAGGTTTCTAACAGGAATTTATTTTTGGCTCACCTACCCCCTCTCCCTGCCTTTGGCTGTAATAATCCTAGT----GCTGGTTCAAATCCAAACTCATGGATATCT-----AGACTC-----TAATTCACAAGTTGGTTGG-AAAATAGGGTCCATAAGCCTAGGATCAC-----TTTTTTTTTTTTTTCCAGAAAAGGGAACTATAAT----TGTGTGCTATGGTATAT--GAGGGTTGGTGTGGGAGGGAGGCGAGAACAGCACT---------TGTGAGAAAAGTACAGGCGACACTGATGtcaacatgagcggttgtttcactgtagctgccacaaaacaacatgtggtctgcagctacattaataaagagact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30037379 372 - 170955103 GGTTTCTCACCTTAGATAAACTCCTGTTAGGTTTCTAACAGGAATTTATTTTTGGCTCACCTACCCCCTCTCCCTGCCTTTGGCTGTAATAATCCTAGT----GCTGGTTCAAATCCAAACTCATGGATGTCT-----AGACTC-----TAATTCACAGG-TGGTTGG-AAAATAGGGTCCATAAGCCTAGGATCAC--ttttttttttttttttttCAGAAAAGGGAACTATAAT----TGTGTGCTATGGTGTAT--GAGGGTTGGTGTGGGAGGGAGGCGAGAACAGCACT---------TGTGAGAAAAGTACAGGCAGCACTGATGtcaacatgagcggttgtttcactgtagctgccacaaaacaacatgtggtctgcagctacattaatagagatact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     272910 369 +   1495729 GGTTTCTCACCTTAGATAAACTCCTGTTAGGTTTCTAACAGGAATTTATTTTTGGCTCACCTACCCCCTCTCCCTGCCTTTGGCTGTAATAATCCTAGT----GCTGGTTCAAATCCAAACTCATGGATATCT-----AGACTC-----TAATTCACAAGTTGGTTGG-AAAATAGGGTCCATAAGCCTAGGATCAC------TTTTTTTTTTTTTCCAGAAAAGGGAACTATAAT----TGTGTGCTATGGTATAT--gaggattggtgtgggagggaggcgagaacagcact---------tgtgagaaaagtacaggcggcactgatgtcaacatgagcggttgtttcactgtagctgccacaaaacaacatgtggtctgcagctacattaataaagatact
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     381792 363 -    863181 AGTTTCTCACCTTAGATAAACTCCTGTTAGGTTTCTAACAGGAATTTATTTTTGGCTCACCTACCCCCTCTCCCTGCCTTTGGCTGTAATAATCCTAGT----GCTGGTTCAAATCCAAACTCATGGATGTCT-----AGACTC-----TAATTCACAGT-TGGTTGG-AAAATAGGGTCCATAAGCCTAGGATCAC-----------TTTTTTTTTCAGAAAAGGGAACTATAAT----TGTGTGCTATGGTATAT--GAAGGTTGGTGTGGGAGGGAGGCGAGAACAGCACT---------TGTGAGAAAAGTACAGGCGGCATGGATGtcaacatgagcggttgtttcactgtagctgccacaaaacaacatgtggtctgcagctacattaataaagatact
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29537153 374 -  71996105 AGTTTCTCACCTTAGATAAACTCCTGTTAGGTTTCTAACAGGAATTTATTTTTGGCTCACCTACCCCCTCTCCCTGACTTTGGCTGTAATAATCCTAGT----GCTGGTTCAAATCCAAACTCATGGATGTCT-----AGACTC-----CAATTCACAGT-TGGTTGG-AAAATAGGGTCCATAAGCCTAGGATCACttttttttttttttttttttCAGAAAAGGGAACTATAAT----TGTGTGCTATGGTGTAT--GAGGGTTGGTGTGGGAGGGAGGCGAGAACAGCACT---------TGTGAGAAAAGTACAGGCGACACTGATGtcaacatgagcggttgtttcactatagctgccacaaaacaacatgtggtctgcagctacattaataaagatact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     208949 363 -    735854 GGTTTCTCACCTTAGATAAACTCCTGTTAGGTTTCTAACAGGAATTTATTTTTGGCTCACCTACCCCCTCTCCCTGCCTTTGGCTGTAATAATCCTAGT----GCTGGTTCAAATCCAAACTCATGGATGTCT-----AGACTC-----TAATTCACAGT-TGGTTGG-AAAATAGGGTCCATAAGCCTAGGATCAC-----------TTTTTTTTTCAGAAAAGGGAACTATAAT----TGTGTGCTGTGGTATAT--GAGGGTTGGTGTGGgagggaggcgagaacagcact---------tgtgagaaaagtacaggcggcactgatgtcaacatgagcggttgtttcactgtagctgccacaaaacaacatgtggtctgcagctacattaataaagatact
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     174420 366 -   1829203 AGTTTCTCACCTTAGAT-AACTCCTGTTAGGTTTCTAACAGGAATTTATTTTTGGCTCACCTACCCCCTCTCCCTGCTTTTGGCTGTAATAATCCTAGT----GCTGGTTCAAATCCAAACTCATGGATGTCT-----AGACTC-----TAATTCACAGT-TGGTTGG-AAAATAGGGTCCATAAGCCTAGGATCAC-------TTTTTTTTTTTTTCAGAAAAGGGAACTATAAT----TGTGTGCTATGATATAT--GAGGGTTGGTGTGGGAGGGAGGTGAGAACAGCAGT---------TGTGAGAAAAGTACAGGCGGCACTGATGTCAACACGAGCGGTTGTTTCACtgtagctgccacaaaacaacatgtggtctgcagctacgttaataaagatact
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30351338 374 + 171630274 AGTTTCTGACCTTAAATAAACTTGTGTTAGGTTTCTAACAGGAATTTATTTTTGGCTCACCTATTT-CCCTCCCCGCCTTTAGCTGTAAGAATCCTAGT----ACTGGCTCAAATCCAAACTCATGGATTTCT-----AGACTCTAACTTAATTCACAGT-TGGTTGG-AAAATAGGGTCCATAAGCCTAGGATCAT--------------TTTTTTCTGAAAAGGGAACTATGAT----TGCATGCTGTGGTATGTAAGAGGGTTTGTGTGGGAGGGAGGCGAGAACAGCATTTCTGTTCTCTGTGAGGAAAATACATTCCACATAGATGTCAACCTGAGCAGTCGTTTCACTGTTACTG-CCCAAAACAGGATGTGGTCTGCAGCTACATTAATAAAGATACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           174850 375 +    515838 AGTTTCTCACCTTAAATAAACTCGAGTTAGGTTTCTAACAGGAATTTATTTTTGGCTCACCTACCC-CTATCCCTGCCTTTAGCTGTAAGAATCCTAGT----GCTGGCTCAAATCCAAACTCATGGATTTCT-----AGACTCTAATTTAATTCACAGT-TGGTTGG-AAAATACCGTCCATAAGCCTAGGATCAT--------------TTTTTTCTGAAAAGGGAACTATAAC----TGCGTGCTGTGGTATGTAAGAGGGTTTGTGTGGGAGGGAGGCGAGAACAGCATTTCTGTTCTCTGTGAGGAAAATACATTCAGCATAGATGtcaatctaagcagttgtttcactgtaactgacacaaaacaggatgtggtctgcagctacattaataaagatact
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     808887 363 -   1771730 AGTTTCTCACCTTAAATAAACTCAAGTT-----------AGGAATTTATTTTTGGCTCACCTACCC-CCCTCCCTGCCTTTAGCTGTAAGAATCCTAGT----GCTGGCTCAAATCCAAACTCATAG-TTTCT-----AGACCCTAATTTAACTCACAGT-TAGTTGG-AAAATAGGGTCCATAAGCCTAGGATCAT--------------TTTTTTCTGAAAAGGTAACTATAAT----TGTGTGCTGTGGTATGTAAGAGGGTTTGTGTGGGAGGGAGGCGAGAACAGCATTTCTGTTCTCTGTGAGGAAAACACATTCAGCATGGATGTCAACCTGAGCAGTTGTTTCACtgtaactgacacaaaacaggatgtggtctgcagctacattaatacagatact
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     290906 378 -    383796 ATTTTCTCACCTTCAATAAACTCA--TTAGGTTTCTAATAGGAATTTATTTTTGGTTCACCTACCC-CCCTCCCTGCCTTTAGCTGTAAGAATCCTAGT----GCTGGCTCAAATCCAAACTCATGAATTTCT-----AGACTCTAATTTAATTCACAGT-TGGTTGGAAAAATAGGGTCCATAAGCCTAGGATCAT--------------TTTTTTCCGAAAAGGGAACTATAATTGCGTGCGTGCTGCAGTATGTAAGAGGGTTTGTGTGGGAGGGAGGTGAGAACAGCATTTCTGTTCTCTGTGAGGAAAATACATTTGGCATAGATGtcaacctgagcagtggtttcactgtaactgccacaaaacaggatgtggtctgcagctacattaataaagatact
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           214140 360 +  18854210 AGTTTCTCATCTTAGGTAAATTTCTGTTAATTTTTTT------ATCTTCTCTGTGCCCTCCTCCCCCTCCCCCTGGCACTTAGCTCCAGATATCTTAGTGTTGGCTGGCTCTAGTCCAAACTCATGGATTTATAAAGCAGAGTCTAATTTGATTCACAAT-TGGTTGG-ATAGTAGGGTCCATAAACCTAGGGTTAT---------------TTTTTCTGAAAAGGGAAATACAAT----ATCAAGCTGTGCCACGTAAGAGGGTTTGTATGTAAATGAGAGGAAAGGAGCACT---------TGAGAGAAAA-TACAGGCTGCATCAATGTCAGTACAAGTTGTTGATT-GCTATAGCTGCCATGAAACAGCATTTG-------GCTACATTAATAAAGATACT
i otoGar3.GL873550         I 208 I 253
e mm10.chr17               58018469 2227 -  94987271 I

a score=1459739.000000
s hg38.chr6_GL000254v2_alt  1386866 145 +   4827813 gtttctagaatagggaggtgctgtacactggtcattcatttagccaatatttgttgagtgctggctgtatgaaatgctagttttacatctg-gaaactaaaaacaggcaaaaattgctggccttgaggggcacatgttttagtggg
s panTro5.chr6             30260269 145 + 175400573 gtttctagaatagggaggtgctgtacactggtcattcatttagccaatatttgttgagtgctggctgtatgaaatgctagttttacatctg-gaaactaaaaacaggcaaaaattgctggccttgaggggcacatgttttagtggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30490794 145 + 173848474 gtttctagaatagggaggtgctgtacactggtcattcatttagccaatatttgttgagtgctggctgtatgaaatgctagttttacatctg-gaaactaaaaacaggcaaaaattgctggccttgaggggcacatgttttagtggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     197402 143 +   2037526 gtttctagaatagggaggtgctgtacactggtcattcatttagccaatatttgttgagtgccggcagtataaaatgctagttttacatctg-gaaactaaaaacaggcaaaaattgctggccttgaggggcac--gttttagtggg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74869726 145 + 122973662 gtttctagaatagggaggtgctgtacactggtcattcattccgccaatatttgttgagtgctggctgtatgaaatgctagttttacatttg-gaaactaaaaacaggcaaaaattgctggccttgaggggcacatgttttagtggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30741237 145 + 172585720 gtttctagaatagagaggtgctgtacactggtcattcatttagccaatatttgttgagtgctggctatatgaaatgttagttttacatctg-gaaactaaaatcaggcaaaaattgctggccttgaggggcacatgttttagtggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30037751 145 - 170955103 gtttctagaatagggaggtgctgtacactggtcattcatttagccaatatttgttgagtgctggctatatgaaatgctagttttacatctg-gaaactaaaatcaggcaaaaattgctggccttgaggggcacatgttttagtggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     273279 145 +   1495729 gtttctagaatagggaggtgctgtacactggtcattcatttagccaatatttgttgagtgctggctatatgaaatgctagttttacatctg-gaaactaaaatcaggcaaaaattgctggccttgaggggcacatgttttagtggg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     382155 145 -    863181 gtttctagaatagggaggtgctgtacgctggtcattcatttagccaatatttgttgagtgctggcgatatgaaatgctagttttacatctg-gaaactaaaatcaggcaaaaattgctggccttgaggggcacatgttttagtggg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29537527 145 -  71996105 gtttctagaatagggaggtgctgtgcactggtcattcatttagccaatatttgttgagtgctggctatatgaaatgctagttttacatctg-gaaactaaaatcaggcaaaaattgctggccttgaggagcacatgttttagtggg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     209312 145 -    735854 gtttctagaatagggaggtgctgtacgctggtcattcatttagccaatatttgttgagtgctggcgatatgaaatgctagttttacatctg-gaaactaaaatcaggcaaaaattgctggccttgaggggcacatgttttagtggg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     174786 145 -   1829203 gtttctagaatagggaggtgctgtacactggtcattcatttagccaatatttgttgagtgctggctatatgaaatgctagttttacatctg-gaaactaaaatcaggcaaaaactgctggccttgaggggcacatgttttagtggg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30351712 146 + 171630274 GTTTCTAGTATACAGAGGTGCCGTTTCTAGAtcactcatgtagccaatgtttgttgagtgctggctgtatgaaatgctagttctacatttgtggatgtaaaaacatgcaaaaattgctggccttgaggggcatatgttttagtggg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           175225 135 +    515838 gtttctagaatagggaggt----------gatcactcatgtagccaatgtttgttgagtgctggctgtatgaaatgctagttttacatctg-gaaactaaaaacatgcaaaaattgctggccttgaggggcatatgttttagtggg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     809250 145 -   1771730 gtttctagaatagggaggtGCCGTACAGTGAtcactcacgtagccaatgtttgttgagtgctggctgtatgaaatgctagttttacatctg-gaaactaaaaacatgcaaaaattgctggccttgaggggcatatgttttagtggg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     291284 145 -    383796 gtttctagaatagagaggtGCTGTACAGTGATCACTCATGTAGCCAATGTTTGTTGAGTGCTGGCTGTATGAAATGCTAGTTTTACATCTG-GAAACTAAAAACATGCAAAAATTGCTGGCCTTGAGtggcatatgttttagtgga
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           214500 253 +  18854210 I

a score=8281.000000
s hg38.chr6_GL000254v2_alt  1387011 1 +   4827813 a
s panTro5.chr6             30260414 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30490939 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     197545 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74869871 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30741382 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30037896 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     273424 1 +   1495729 a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     382300 1 -    863181 a
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29537672 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     209457 1 -    735854 a
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     174931 1 -   1829203 a
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30351858 1 + 171630274 a
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           175360 1 +    515838 a
i saiBol1.JH378341         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           214500 253 +  18854210 I
e aotNan1.NW_018496904v1     291429 0 -    383796 C
e cebCap1.NW_016107755v1     809395 0 -   1771730 C

a score=1721408.000000
s hg38.chr6_GL000254v2_alt  1387012 306 +   4827813 aaacacagactatgtactataagcagagtaaataaggaaagtgtttctgtcaaaaggtgctgaggggtgtgaggcaggtgatccagattgtgggtgtgtggggacagggaagatggctgttttactagggtggtctatg---gtctcactgggaatgtgaccttaagagaaaagatgaattatctatgaggacgtctggggcaggttctttccaggcaggggaacccccagtgcaaaggcaccagaacaggagcacatctgggttgtgggaggagttgagggggctcagatagctgcagc--agtcattga
s panTro5.chr6             30260415 305 + 175400573 aaacacagactatgtactataagcagagtaaataaggaaagtgtttctgtcaaaaggtgctgaggggtgtgaggcaggtgatccagattgtgggtgtgtggggacagggaagatggctgttttactagggtggtctatg---gtctcactgggaatgtgacctt-agagaaaagatgaattatctatgaggacgtctggggcaggttctttccaggcaggggaacccccagtgcaaaggcaccagaacaggagcacatctgggttgtgggaggagttgagggggctcagatagctgcagc--agtcattga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30490940 305 + 173848474 aaacacagactatgtactataagcagagtaaataaggaaagtgtttctgtcaaaaggtgctgaggggtgtgaggcaggtgatccagattgtgggtgtgtggggacagggaagatggctgttttactagggtggtctatg---gtctcactgggaatgtgacctt-agagaaaagatgaattatctatgaggacgtctggggcaggttctttccaggcaggggaacccccagtgcaaaggcaccagaacaggagcacatctgggttgtgggaggagttgagggggctcagatagctgcagc--agtcattga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     197546 304 +   2037526 aaacacagactatgtactataagcagagtaaataaggaaagtgtttctgtcaaaaggtgctgaggggtatgaggcaggtgatccagattgtgggtgtgtggggacagggaagatggctgttttactagggtggtctatg---gtctcactgggaatgtgaccgt-agagaaaagatgaattatctatgaggacgtctggggcaggttctttccaggcaggggaacccccagtgcaaaggcaccagaacaggagcacatctgggttgtgggaggagttg-gggggctcagatagctgcagc--agtcattga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74869872 307 + 122973662 aaacacagactatgtactataagcagagtaaataaggaaagtgtttctgtcaaaaggtgctgaagggtgtggggcaggtgatccagattgtgggtgtgtggggacagggaagatggctgttttactagggtggtctgtg---gtctcattgggaatgtgacctt-agagaaaagatgaattatctatgaggacatctggggcaggttctttccaggcaggggagcccccagtgtaaaggcactggaacaggagcacatctgtgttgtgggaggagttaagggggctaagatagctgcagcagagtcattga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30741383 310 + 172585720 aaacacagactatgaactataagcagagtaactaaggaaagtgtttctggcaaaaggtactgagggctgtggggcaggtgatccagattgtgggtgtgtggggacacggaagatggctgttttattagaatggtctgtgtgtgtctcattgggaatgtgacctt-agagaaaagatgaattatctatgaggctgtctggggcaggttctttccaggcaggggaacccccagtgcaaaggcaccagaacaggagcacatctgtgttgtgggaagcgtaaagggggctcagatagctgcagcagagtcattga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30037897 310 - 170955103 aaacacagactatgaactataagcagagtaactaaggaaagtgtttctggcaaaaggtgctgagggctgtggggcaggtgatccagattgtgggtgtgtggggacacggaagatggctgttttattagaatggtctgtgtgtgtctcattgggaatgtgacctt-agagaaaagatgaattatctatgaggctgtctggggcaggttctttccaggcaggggaacccccagtgcaaaggcaccagaacaggagcacatctgtgttgtgggaagcgtaaagggggctcagatagctgcagcagagtcattga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     273425 309 +   1495729 aaacacagactatgaactataagcagagtaactaaggaacgtgtttctggcaaaaggtgctga-ggctgtggggcaagtgatccagattgtgggtgtgtggggacacggaagatggctgttttattagaatggtctgtgtgtgtctcattgggaatgtgacctt-agagaaaagatgaattatctatgaggctatctggggcaggttctttccaggcaggggaacccccagtgcaaaggcaccagaacaggagcacatctgtgttgtgggaagcgtaaagggggctcagatagctgcagcagagtcattga
i macNem1.NW_012012100v1   C 0 I 13797
s cerAty1.NW_012002535v1     382301 309 -    863181 aaatacagactatgaactataagcagtgtaactaaggaaagtgtttctggcaaaaggtgctga-ggctgtggggcaggtgatccagattgtgggtgtgtggggacagggaagatggctgttttactagagtggtctgcgtgtgtctcattgggaatgtgacctt-agagaaaagatgaattatctatgaggctgtctggggcaggttctttccaggcaggggaacccccagtgcaaaggcaccagaacaggagcacatccgtgttgtgggaagcgtaaagggggctcagatagctgcagcagagtcattga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29537673 310 -  71996105 aaacacagactatgaactataagcagagtaactaaggaaagtgtttctggcaaaaggtgctgagggctgtggggcaggtgatccagattgtgggtgtgtggggacagggaagatggttgttttactagagtggtctgcgtgtgtctcattgggaatgtgacctt-agagaaaagatgaattatctatgaggatgtctggggcaggttctttccaggcaggggaacccccagtgcaaaggcaccagaacaggagcacatctgtgttgtgggaagcgtaaagggggctcagatagctgcagcagagtcattga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     209458 309 -    735854 aaacacagactatgaactataagcagagtaactaaggaacgtgtttctggcaaaaggtgctga-ggctgtggggcaggtgatccagattgtgggtgtgtggggacagggaagatggctgttttactagagtggtctgcgtgtgtctcattgggaatgtgacctt-agagaaaagatgaattatctatgacgctatctggggcaggttctttccaggcaggggaacccccagtgcaaaggcaccagaacaggagcacatctgtgttgtgggaagcgtaaagggggctcagatagctgcagcagagtcattgg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     174932 310 -   1829203 aaacacagactatgaactataagcagagtaaccaaggaaagtgtttctggcaaaaggtgctcagggctgtggggcaggtgatccagactgtgggtgtgtggggacagggaagatggctgttttactagagtggtctgcgtgtgtctcattgggaatgtggcctt-agagaaaagatgaattatctatgatgatgtctggggcaggttctttccaggcaggggaacacccagtgcaaaggcaccagaacaggagcacatctgtgttgtgggaaaagtaaagggggctaagatagctgcagcagagtcactga
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           175361   0 +    515838 C
e otoGar3.GL873550           214500 253 +  18854210 I
e aotNan1.NW_018496904v1     291429   0 -    383796 C
e cebCap1.NW_016107755v1     809395   0 -   1771730 C
e calJac3.chr4             30351859   0 + 171630274 C

a score=690984.000000
s hg38.chr6_GL000254v2_alt  1387318 126 +   4827813 tataaggtcagagatttggggagatcatgtaggcttgaggatactggaagggttctgactttgctctgagtgagat-gggggagacac-aaacagctgtcagcagagtagagacttggcacatctttt
s panTro5.chr6             30260720 124 + 175400573 tataaggtcagagatttggggagatcatgtaggcttgaggatactggaagggttctgac--tgctctgagtgagat-gggggagacac-aaacagctgtcagcagagtagagacttggtacatctttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30491245 124 + 173848474 tataaggtcagagatttggggagatcatgtaggcttgaggatactggaagggttctgac--tgctctgagtgagat-gggggagacac-aaacagctgtcagcagagtagagacttggtacatctttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     197850 126 +   2037526 tataaggtcagagatttggggagatcatgtaggcttgaggatactggaagggttctgactttgctctgagtgagat-gggggagacac-aaacagctgtcagcagagtagagacttggtacatctttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74870179 126 + 122973662 gataaggtcagagatttggggagatcatgtaggcttgaggacactggaagggttctgactttgctctgagtgagat-gggggagatac-aaatagctgtcagcagagtagagacttggtacatctttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30741693 126 + 172585720 gataaggtcagagatttggggagatcatgtaggctccaggatactggaagggttttgactttgctctgagtgagat-gggggagacacaaaacagctgtcagtagagtagagac-tggcacatctttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30038207 126 - 170955103 gataaggtcagagatttggggagatcatgtaggctcgaggatactggaagggttttgactttgctctgagtgagat-gggggagatacaaaacagctgtcagcagagtagagac-tggcacatctttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     287531 126 +   1495729 nnnnaggtcagagatttggggagatcacgtaggctcgaggatactggaagggttttgactttgctctgagtgagat-gggggagatacaaaacagctgtcagtagagtagagac-tggcacatctttt
i macNem1.NW_012012100v1   I 13797 C 0
s cerAty1.NW_012002535v1     382610 126 -    863181 gatgaggtcagagatttggggagatcatgtaggctcgaggatactggaagggttttgactttgctctgagtgagat-gggggagacacaaaacagctgtcagcagagtagagac-tggtacatctttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29537983 127 -  71996105 gataaggtcagagatttggggagatcatgtaggctcaaggatactggaagggttttgactttgctctgagtgagatggggggagacacaaaacagctgtcagcagagtagagac-tggtacgtctttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     209767 126 -    735854 gatgaggtcagagatttggggagatcatgtaggctcgaggatactggaagggttttgactttgctctgagtgagat-gggggagatacaaaacagctgtcagcagagtagagac-tggtacatctttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     175242 126 -   1829203 gataaggtcagagatttggggagatcatgtaggctcgaggatactggaagggttttgactttgctctgagtgagat-gggggagatacaaaactgctgtcagcagagtagagac-tggtatatctttt
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           175361   0 +    515838 C
e otoGar3.GL873550           214500 253 +  18854210 I
e aotNan1.NW_018496904v1     291429   0 -    383796 C
e cebCap1.NW_016107755v1     809395   0 -   1771730 C
e calJac3.chr4             30351859   0 + 171630274 C

a score=8281.000000
s hg38.chr6_GL000254v2_alt  1387444 1 +   4827813 a
s panTro5.chr6             30260844 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30491369 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     197976 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74870305 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30741819 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30038333 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     287657 1 +   1495729 a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     382736 1 -    863181 a
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29538110 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     209893 1 -    735854 a
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     175368 1 -   1829203 a
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     809395 1 -   1771730 a
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     291429 1 -    383796 a
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           175361 0 +    515838 C
e otoGar3.GL873550           214500 253 +  18854210 I
e calJac3.chr4             30351859 0 + 171630274 C

a score=9713837.000000
s hg38.chr6_GL000254v2_alt  1387445 1003 +   4827813 aaaggatcatcctggctgctatgctgagaacagaattgagagatgaggggtgagtgagaaagtgggaaaactgtaggaaactagtgcagtatttcagattagcaactctggttgctttgcctggggtgtgagcagagaaaagagtgggaagtgattggatttcagacacattctcaatatggacttcacagtacttcctaatagattaagtctggggtatgaaaaagaggagtcaaagaggaaccccaaaatttcagactgtgcaagtagaaaaatgaagttgttgtcagcacagatggggaaaattctgaaaggggcatatttgaggagggggcactataggcattcaatttaggaaatgttgaatctcagatgtcagacattcaagtgaggttgttgtgttggcagatggatatgcaagttggaaatgtaggagaaatgtctgggctgggaaaatagatttaggagttaatgccatattaatgatatttaaagcatagagcatgcatgagtcgccaagggaaagatggctatagaagagaaaaaggacatggactgaac----------cctggaccttc----------agtgctaagggatTTCATCAGAACACACTCTGACAGCAGACTGCACAGTTCTAACACCACATCTAGAAAGTAAGTAAATCTGAGAAtctcaaattttagtgtgcgtaggaatcacctggacaactttctaagattcaggtggtctggagttgagaatgag---attctgtg-tttat-aaaaaagttgaggcagacactgatggtcttcagatcacacttttagtag-caagAATGTAGACCAGGATTCCCAGGTGGCTgtgcatcagcctcacctgtggcttgttattcctgggatccatgttccacttctgagatggtgggtatggggaaaggcctgagtatttttgtaaaaaatctacaaggaatcctggtgatcagccagattgggaaccacTGAGGTCAGTGATCAACAGTGCCTAGGGTGGGAAAGGGTCT
s panTro5.chr6             30260845 1013 + 175400573 aaaggatcaccctggctgctatgctgagaacagaattgagagatgaggggtgagtgagaaagtgggaaaactgtaggaaactagtgcagtatttcagattagagactctggttgctttgcctggggtgtgagcagagaaaagagtgggaagtgattggatttcagacacattctcaatatggacttcacagtacttcctaatagattaagtctggggtatgaaaaagaggagtcaaagaggaaccccaaaatttcagactgtgcaagtagaaaaatgaagttgttgtcagcacagatggggaaaattctgaaaggggcatatttgaggagggggcactataggcattcaatttaggaaatgttgaatctcagctgtcagacattcaagtgaggttgttgtgttggcagatggatatgcaagttggaaatgtaagagaaatgtctgggctgggaaaatagatttaggagttaatgccatattaatgatatttaaagcatagagcatgcatgagtcgccaagggaaagatggctatagaagagaaaaaggacatggactgaaccctggACCTTCCTGGACCTTC----------AGTGCTAAGGGATTTCATCAGAACACACTCCGACAGCAGACTGCACAGTTCTAACACCACATCTAGAAAGTAAGTAAATCTGAGAAtctcaaattttagtgtgcgtaggaaacacctggacaactttctaagattcaggtggtctggagttgagaatgag---attctgtg-tttat-aaaaaagttgaggcagacactgatggtcttcagatcacacttttagtag-caagAATGTAGACCAGGATTCCCAGGTGGCTgtgcatcagcctcacctgtggcttgttattcctgggatccatgttccacttctgagatggtgggtatggggaaaggcctgagtatgtttgtaacaaatctacaaggaatcctggtgatcagccagattgggaaccacTGAGGTCAGTGATCAACAGTGCCTAGGGTGGGAAAGGGTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30491370 1003 + 173848474 aaaggatcaccctggctgctatgctgagaacagaattgagagatgaggggtgagtgagaaagtgggaaaactgtaggaaactagtgcagtatttcagattagagactctggttgcttcgcctggggtgtgagcagagaaaagagtgggaagtgattggatttcagacacattctcaatatggacttcacagtacttcctaatagattaagtctggggtatgaaaaagaggagtcaaagaggaaccccaaaatttcagactgtgcaagtagaaaaatgaagttgttgtcagcacagatggggaaaattctgaaaggggcatatttgaggagggggcactataggcattcaatttaggaaatgttgaatctcagatgtcagacattcaagtgaggttgttgtgttggcagatggatatgcaagttggaaatgtaagagaaatgtctgggctgggaaaatagatttaggagttaatgccatattaatgatatttaaagcatagagcatgcatgagtcgccaagggaaagatggctatagaagagaaaaaggacatggactgaac----------cctggaccttc----------agtgctaagggatTTCATCAGAACACACTCCGACAGCAGACTGCACAGTTCTAACACCACATCTAGAAAGTAAGTAAATCTGAGAAtctcaaattttagtgtgcgtaggaaacacctggacaactttctaagattcaggtggtctggagttgagaatgag---attctgtg-tttat-aaaaaagttgaggcagacactgatggtcttcagatcacacttttagtag-caagAACATAGACCAGGATTCCCAGGTGGCTgtgcatcagcctcacctgtggcttgttattcctgggatccatgttccacttctgagatggtgggtatggggaaagacctgagtatgtctgtaacaaatctacaaggaatcctggcgatcagccagattgggaaccacTGAGGTCAGTGATCAACAGTGCCTAGGGTGGGAAAGGGTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     197977 1000 +   2037526 aaaggatcaccctggctgctatgctgagaacagaatt--gagatgaggggtgagtgagaaagtgggaaaactgtaggaaactagtgcagtatttcagattagagactctggttgctttgcctggggtgtgagcagagaaaagagtgggaagtgattggatttcagacacattctcaatatggacttcacagtacttcctaatagattaagtctggggtatgaaaaagaggagtcaaagaggaaccccaaaatttcagactgtgcaagtagaaaaatgaagttgttgtcagcacagatggggaaaattctgaaa-gggcatatttgaggagggggcactataggcattcaatttaggaaatgttgaatctcagatgtcagacattcaagtggggttgttgtgttggcagatggatatgcaagttggaaaggtaggagaaatatctgggctgggaaaatagatttaggagttaatgccatattaatgatatttaaagcatagagcatgcatgagtcgccaaggg-aagatggctatagaagagaaaaaggacatggactgaac----------cctggaccttc----------agtgctaagggatTTCATCAGAACACACTCTGACAGCAGACTGCACAGTTCTAACACCACATCTAGAAAGTAAGTAAATCTGAGAAtctcaaattttactgtgcgtaggaatcacctggacaactttctaagattcaggtggtctggagttgagaatgag---attctgtgttttat-aaaaaagttgaggcagacactgatggtcttcagatcacacttttagtag-caagAATGTAGACCAGGATTCCCAGGTGGCcgtgcatcagcctcacctgtggcttgttattcctggaatccatgttccacttctgagatggtgggtatggggaaaggcctgagtatttttgtaacaaatctacaaggaatcctggtgatcagccagatttggaaccacTGAGGTCAGTGATCAACAGTGCCTAGGGTGGGAAAGGGTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74870306 1000 + 122973662 aaaggatcaccctggctgctatgctgagaacagaattgagagatgaggggtgagtgagaaagtgggaaaactgtaggaaactagtgcagtatttcagactagagatgctggttgctttgcctggggtgtgagcagagaaaagagtgggaagtgactggattccggacatattctcaatatgaacttcacagtacttcctaacagattaagtctggggtatgaaaaagaggagtcaaacaggaacctctaaatttcagactgtgcaagtagaaaaatgaagttgttgtcagcacagatggggaaaattctgaaaggggcatatttgaggagggggcaccacaggcattcaatttaggaaatgttgaatctcagatgtcagacattcaagtgaggttgttgtgttggcagatggatatgcaagttggaaatttaggagaaatgtctgggctgggaaaatagatttaggagctaatgccatattaatgata-ttaaagcatagagcatgcatgagtcaccaagggaatgatggctatagcagagaaaaaggacatatactgaac----------cctggaccttc----------agtgctaaggga-tTCATCAGAACACACTCTGACAGCAGACTGCACAGTCCTAACATCACAACTAGAAAGTAAGTAAATCTGAGAAtctcaaattttagtgtgcacaggaatcacctggacaactttctaagattcaggtggtctggagttgagaatgag---attctgtg-tttat-aaaaaagttgaggcagacactgatggtcttcagatcacactgttagtag-caagAATGTAGACCAGGATTCCCACGTGGCTgtgcatcagcctcacctgcggcttgttattcctgggatccatgttccacttctgagatggtgggtatggggaaaggcctgagtat-tttgtaacaaatatacaaggaatcctggtgatcagccagattgggaaccacTGAGGTCAGTGATCAACAGTGCCTAGGGTGGGAAAGGGTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30741820  978 + 172585720 aaaggatcaccttggctgctatgctgagaacagaactgagagatgaggggtgagtgagaaagtgggaaaactgtaggaaactagtgcagtatttcagactagagatgctggttgctttgcctggggtgtgagcagacaaaagagtgggaagtgattggattccgtacatattctcaatatggacttcatagcacttcctaatagattaagtctggggtatgaaaaagaggagtcaaagaggaaccccaaaatttcagactgtgcaagtagaaaaatgaagttgttatcagcagagatggggaaaattctgaaaggggcatatctgaggagggggcaccacaagcattcaatttaggaaatgttgaatctcagatgtcaggcattcaagtgag------------------------gcaagttgggaatttaggagaaatgtctgggctgggaaaatagatttaggaactaatgccatattaatgatatttaaagcatagagcatgcatgagtcaccaagggagtgatggctatagaagagaaaaaggacatggactgaac----------cctggaccttc----------agtgctaagggatTTCATCAGAACACACTCCGACAGCAGACTGCACAGTTCTAACACCACATCTAGAAAGTATGTAAATCTGAGAAtctcaaattttagtgtgcataggaattacctggacaactttctaagattcaggtggtctggagttgagaatgag---attctgtg-tttat-aaaaaagttggggcagacactgatggtcttcagatcacacttttagtag-caagAATGTAGACCAGGATTCCCTCGTGGCTgtgcgtcagccttacctgcagcttgttattcctgagctccatgttccacttctgagatggtgggactggggaaaggcctgagtat-tttgtaacaaacctacaaggaatcctggtgatcagccagagtgggaaccacTGAGGTCAGCGATCAACAGTGCCTAGGGTGGGAAAGGGTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30038334  978 - 170955103 aaaggatcaccttggctgctattctgagaacagaactgagagatgaggggtgagtgagaaagtgggaaaactgtaggaaactagtgcagtatttcagactagagatgctggttgctttgcctggggtgtgagcagacaaaagagtgggaagtgattggattccgtacatattctcaatatggacttcatagcacttcctaatagattaagtctggggtatgaaaaagaggagtcaaagaggaaccccaaaatttcagactgtgcaagaagaaaaatgaagttgttgtcagcagagatggggaaaattctgaaaggggcatatctgaggagggggcaccacaagcattcaatttaggaaatgttgaatctcagatgtcaggcattcaagtgag------------------------gcaagttgggaatttaggagaaatgtctgggctgggaaaatagatttaggaactaatgccatattaatgatatttaaagcatagagcatgcatgagtcaccaagggagtgatggctatagaagagaaaaaggacatggactgaac----------cctggaccttc----------agtgctaagggatTTCATCAGAACACACTCCGACAGCAGACTGCACAGTTCTAACACCACATCTAGAAAGTATGTAAATCTGAGAAtctcaaattttagtgtgcataggaattacctggacaactttctaagattcaggtggtctggagttgagaatgag---attctgtg-tttat-aaaaaagttggggcagacactgatggtcttcagatcacacttttagtag-caagAATGTAGACCAGGATTCCCTCGTGGCTgtgcgtcagccttacctgcagcttgttattcctgagctccatgttccacttctgagatggtgggactggggaaaggcctgagtat-tttgtaacaaacctacaaggaatcctggtgatcagccagagtgggaaccacTGAGGTCAGCGATCAACAGTGCCTAGGGTGGGAAAGGGTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     287658  978 +   1495729 aaaggatcaccttggctgctatgctgagaacagaactgagagatgaggggtgagtgagaaagtgggaaagctgtaggaaactagtgcagtatttcagactagagatgctggttgctttgcccggggtgtgagcagacaaaagagtgggaagtgattggattccgtacatattctcaatatggacttcatagcacttcctaatagattaagtctggggtatgaaaaagaggagtcaaagaggaaccccaaaatttcagactgtgcaagtagaaaaatgaagttgttgtcagcagagatggggaaaattctgaaaggggcatatctgaggagggggcaccacaagcattcaatttaggaaatgttgaatctcagatgtcaggcattcaagtgag------------------------gcaagttgggaatttaggagaaatgtctgggctgggaaaatagatttaggagctaatgccgtattaatgatatttaaagcatagagcatgcatgagtcaccgagggagtgatggctatagaagagaaaaaggacatggactgaac----------tctggaccttc----------agtgctaagggatTTCATCAGAACACACTCCGACAGCAGACTGCACAGTTCTAACACCACATCTAGAAAGTATGTAAATCTGAGAAtctcaaattttagtgtgcataggaattacctggacaactttctaagattcaggtggtctggagttgagaatgag---attctgtg-tttat-aaaaaagttggggcaggcactgatggtcttcagatcacacttttagtag-caagAATGTAGACCAGGATTCCCTCGTGGCTgtgtgtcagccttacctgcagcttgttattcctgagctccatgttccagttctgagatggtgggaatggggaaaggtctgagtat-tttgtaacaaacctacaaggaatcctggtgatcagccagagtgggaaccacTGAGGTCAGCGATCAACAGTGCCTAGGGTGGGAAAGGGTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     382737  978 -    863181 aaaggatcaccttggctgctatgctgagaacagaattgagagatgaggggtgagtgagaaagtgggaaagctgtaggaaactagtgcagtatttcagactagagatgctagttgctttgcctggggtgtgagcagacaaaagagtgggaagtgattggattccgtacatattctcaatatggacttcatagcacttcctaatagattaagtctggggtacgaaaaagaggagtcaaagaggaaccccaaaatttcagactgtgcaagtagaaaaatgaagttgttgtcagcagagatggggaaaattctgaaaggggcatatctgaggagggggcaccacaggcattcaatttaggaaatgttgaatctcagatgtcaggcattcaagtgag------------------------gcaagttgggaatttaggaggaatgtctgggctgggaaaatagatttaggagctaatgccatattaatgatatttaaagcatagagcatgcatgagtcaccaagggagtgatggctatagaagagaaaaaggacatggactgaac----------catggaccttc----------agtgctaagggatTTCATCAGAACACACTCCGACAGCAGACTGCACAGTTCTAACACCACATCTAGAAAGTATGTAAATCTGAGAAtctcaaattttagtgtgaataggaattacctggacaactttctaagattcaggtggtctggagttgagaatgag---attctgtg-tttat-aaaaaagttggggcaggcactgatggtcttcagatcacacttttagtag-caagAATGTAGACCAGGATTCCCACATGGCTgtgcgtcagcctcacctgcagcttgttattcctgagctccatgttccacttctgagatggtgggaatggggaaaggcctgagtat-tttgtaacaaacctacaaggaatcctggtgatcagccagagtgggaaccacTGAGGTCAGCGATCAACAGTGCCTAGGGTGGGAAAGGGTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29538111  988 -  71996105 aaaggatcaccttggctgctatgctgagaacagaattgagagatgaggggtgagtgagaaagtgggaaagctgtaggaaactagtgcagtatttcagactagagatgctggttgctttgcctggggtgtgagcagagaaaagagtgggaagtgattggattccggacatattctcaatatggacttctcagcacttcctaatagattaagtctggggtatgaaaaagaggagtcaaagaggaaccccaaaatttcagactgtgcaagtagaaaaatgaagttgttgtcagcagagatggggaaaattctgaaaggggcatatctgaggagggggcaccacaggcattcaatttaggaaatgttgaatctcagatgtcaggcattcaagtgag------------------------gcaagttgggaatttaggaggaatgtctgggctgggaaaatagatttaggagctaatgccatattaatgatatttaaagcatagagcatgcatgagtcaccaagggagtgatggctatagaagagaaaaaggacaaggactgaac----------cctggACCTTCTGAACCCTGGAGTGCTAAGGGATTTCATCAGAACACACTCCGACAGCAGACTGCACAGTTCTAACACCACATCTAGAAAGTATGTAAATCTGAGAAtctcaaattttagtgtgcataggaattacctggacaactttctaagattcaggtggtctggagttgagaatgag---attctgtg-tttat-taaaaagttggggcagacactgatggtcttcagatcacacttttagtag-caagAATGTACACCAGGATTCCCACATGGCTgtgcgtcagcctcacctgcagcttgttatgcctgagctccatgttccacttctgagatggtgggaatggggaaaggcccgagtat-tttgtaacaaacctacaaggaatcctggtgatcagccagagtgggaaccacTGAGGTCAGCGATCAACAGTGCCTAGGGTGGGAAAGGGTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     209894  978 -    735854 aaaggatcaccttggctgctattctgagaacagaattgagagatgaggggtgagtgagaaagtgggaaagctgtaggaaactagtgcagtatttcagactagagatactggttgctttgcctggggtgtgaggagacaaaagagtgggaagtgattggattccgtacatattctcaatatggacttcatagcacttcctaatagattaagtctggggtatgaaaaagaggagtcaaagaggaaccccaaaatttcagactgtgcaagtagaaaaatgaagttgttgtcagcagagatggggaaaattctgaaaggggcatatctgaggagggggcaccacaagcattcaatttaggaaatgttgaatctcagatgtcaggcattcaagtgag------------------------gcaagttgggaatttaggagaaatgtctgggctgggaaaatagatttaggagctaatgccatattaatgatatttaaagcatagagcatgcatgagtcaccaagggagtgatggctatagaagagaaaaaggacatggactgaac----------cctggaccttc----------agtgctaagggatTTCATCAGAACACACTCCGACAGCAGACTGCACAGTTCTAACACCACATCTAGAAAGTATGTAAATCTGAGAAtctcaaattttagtgtgcataggaattacctggacaactttctaagattcaggtggtctggagttgagaatgag---attctgtg-tttat-aaaaaagttggggcagacactgatggtcttcagatcacacttttagtag-caagAATGTAGACcaggattccctcgtggctgtgcgtcagccttacctgcagcttgttattcctgagctccatgttccacttctgagatggtgggactggggaaaggcctgagtat-tttgtaacaaacctacaaggaatcctggtgatcagccagagtgggaaccactgAGGTCAGCGATCAACAGTGCCTAGGGTGGGAAAGGGTCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     175369  977 -   1829203 aaaggatcaccttggctgctatgctgagaacagaattgagagatgaggggtgagtgagaaagtgggaaagctgtaggaaactagtgcagtatttcagactagagatgctggttgctttgcctggggtgtgagcagagaaaagagtgggaagtgattggattccggacatattctcaatatggacttcacagcacttcctaatggattaagtctggagtatgaaaaagaggagtcaaagaggaaccccaaaatttcagactgtgcaagtagaaaaatgaagttattgtcagcagagatggggaaaattctgaaaggggcatatctgaggagggggcaccacaggcattcaatttaggaaatgttgaatctcagatgtcaggcattcaagtgag------------------------gcaagttgggaatttaggagaaatgtctgggctgggaaaatagatttagcagctaatgccatattaatgatatttaaagcatagagcatgcatgagtcaccaagggagtgatggctatagaagagaaaaaggacatggactgaac----------cctggaccttc----------agtgctaagggatTTCATCATAACACACTCTGACAGCAGACCGTACAGTTCTAACACCACATCTAGAAACTATGTAAATCTGAGAAtctcaaattttagtgtgtgtaggaattacctggacaactttctaagattcaggtggtctggagttgagaatgag---attctgtg-tttat-aaaaaagttggggcagacactgatggtcttcagatcacacttttggtag-caagAATGTAGACCAGGATTCCCACGTGGCTgtgcgtcagcctcacctgcagcttgttattcctgagctcca-attccacttctgagatggtgggaatggggaaaggcctgagtat-tttgtaacaaacctacaaggaatcctggtgatcagccagagtgggaaccacTGAGGTCAGCGATCAACAGTGCCTAGGGTGGGAAAGGGTCt
i colAng1.NW_012115577v1   C 0 I 157
s calJac3.chr4             30351859  991 + 171630274 aaaggatcaccctggctgctctgctgagaacagagtggacagatgaggggtgaatgagaaagtgagaaaactgtaggaaaccagtgcaatattccagactggagatgttggttgcttttctc----tgtgagcagagaaaagagtgggaagtgattagatttcagacatattctcaatatggacttcacagcactttctagtagattaagtctagggtatgaaa---agaagtcaaagaggaaccccaaaatttcagactgtgcaagtag-aaaatgaagttgttgtcagcagaggtggggaaaattctgaaaggagcatatttgaggaggggacaccaaag-cattcaatttaggaaatgttgaatctcagatgtcagacattcaagtgaggttgttgtgctggcagctggatgtgcaa----ggaatttaggagaaatgtctgggctgggaaaatagatttggtagttaatgccatatcaatgacatttaaagcatagagcatgcatgagtcaccaagggagtgatggctatagaagagaaaaaggacaaggactgaac----------cctggaccttc----------agtgctaagggatTTCATCAGAACACACTCC-ACAACAGACTGCACA-TTCTAACACCACATCTAGATGGTATATAAATCTTAGAAtctcagatttaagtgtgtgtaggaatcacccggacagctttctaagattcaggtggtctggagttgagaatgagattattctgtg-tgtat-aaaaaaattgagacagacactgatggttttcagatcacacttttagtagcCAAGAACATAGACCAGGATTCCCACGTGGCTTtgcatcagcctcacctacagcttgttattcctgggattcatggtctacttctgagatggtgggtatggggaaaagcctgagtat-tctgtaacaatcctacaaggaatcctggtgatcagccaaattgggaaccactttgggaaGGAATCAACAGTGCCTAGGGTGAGATGGGGTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           175361  989 +    515838 aaaggatcaccctggttgctctgctgagaacacagtggacagatgaggggtgagtgagaaagtgagaaaactgtaggaaatcagtgcggtattccagactggagatgttggttgctctgcctggggtgtgagcagagaaaagagtgggaagtgaccagattttggatatattctcaatatggacttcacagtacttcctaacagattaagtctagggtatgaaa---aggagtcaaagaggaaccccaaaatttcagaccatgcaagtag-aaaattaagttgttgtcagcagaggtggggaaaattctgaaaggagcatatttgaggagggggcaccatagccattcaatttaggaaatgttgaatctcagatgtcagacattcaagtgaggttgttgtgttggcagttggatatgcaa----gaaatttaggagaaatgtctgggctgggaaaatagatttggtagttaataccgtattaatgacatttaaagcatagagcatgcatgagtcaccaagggagtgatggctat-----agaaaaaggacaaggactgaac----------cctggacctcc----------agtgctaagggatTCCATCAGAACACCCTCC-ACAGCAGACTGCACAGTTCTAACACCACATCTAGATGATATATAAACCTGAGAAtctcagattttagtgtgcatagggatcacctggacaactttctaagattcaggtggtctggagtagagaatgag---attctgtg-tttat-aaaaaatttgaggcagacactgatggtcttcagatcacacctttagtagccaagAACGTAGACCAGGATTCCCACCTGGCTTtgcatcagcctcagctgcaggttgtcattcctgggattcatggtctacttctgagatggtgggtacggggaaaagcctgaatat-tctgtaacaatcctacaaggaatcctggtgatcagccaaattgggaaccactttgggaagcaATCAACAGTGCCTAGGGTGAGATGGGGTCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     809396  992 -   1771730 aaaggatcaccctggctgctctgctgggaacagagtggacagatgaggggtgagtgagaaagtgag-aaactgtaggacaccagtgcagtactccagactggagacgttggttgctttgcctgtggtgtgagcagagaaaagagtgggaagtgattagatttcggacatattctcaatatggacttcacagcacttcctaacagattaagtctagggtatgaaa---tgatgtcaaagaggaaccccaaaatttcagactgtgcaagtag-aaaatgaagttgttgtcagcagagatggggaaaattctgaaaggagcatatttaaggagggggcaccatacccattcaatttaggaaatgttgaatctcagatgtcagacattgaagtgaggttgttgtgttggcagctggatatgcaa----ggaatttaggagaaatgtctgagctgggaaaatagatttggtagttaatgccatattaatgacatttaaagcatagagcatgcatgagtcaccaaggaagtgatggctatagaagagaaaaaggacaaggactgaac----------cctggaccttc----------agtgctaagggatTTCATCAGAACACACTCC-ACAGCAGACTGCACAGTTCTAACACCACATCTAGATGGTGTATAAATCTGAGAAtctcagattttagtgtgcataggaatcacctggacaactttctaagattcaggtggtctggagttgagaatgag---attttgtg-tttat--aaaaatttgaggcagacactgatggtcttcaaaccacacttttagtagcCAAGAACGTAGACCAGGATTCCCACCTGGCTTtgcatcagcctcacctgcatcttgttattcctgggattcatggtctacttctgagacggtgggtatggggaaaagcctgagtat-tctgtaacaatcctacaaggaatcctggtgatcagccaaattgggaaccactttgggaagcaATCAACAGGGCCTAGGGTGAGATGGGTTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     291430  989 -    383796 aaaggatcaccctggctgctatgctgagaacagagtggacagatgaggggtgagt----aagtgagaaaactgtaggaaatcagtgcagtattccagacaggagatgtttgttgctctgcctggggtgtgagcagaaaacacagttggaagtgattagatttcagacatagtctcaatatggacttcacagcacttcctaacagattaagtctagggtatgaaa---aggagtcaaagaggaaccccaaaatttcagactgtgcaagtag-aaaatgaagttgttgtcagcagagat-gggaaaattctgaaaggagcatatttgagaagagggcaccatagccattcaatttaagaaatgttgcatctcagatgtcagacattcaagtgaggttgttgtgttggcagttggatatgcaa----ggaatttaggagaaatgtctgggctgggaaaatagatttggtagttaatgccatattaatgacatttaaagcatagagcatgcatgagtcaccaagggattgatggctatagaaaagaaaaaggacaaggactgaat----------cctggaccttc----------agtgctaagggatTTCATCAGAATACACTCC-ACAGCAGACTGCACAGTTCTAACACCACATCTAGATGGTATATAAATCTGAGAAtctcagattttagtgtgcataggaatcacctggacaactttctaagattcaggtggtctggagttgagaatgag---attctgtg-tttataaaaaaatttgtggcagacactgacggtcttcagatcacacttttagtagcCAAGAACATAGACCAGGATT-CCACGTGGCTTTACATTAGCCTCATCTGCAGCTTGTTATTCCTGGGATTCATGGTCTGCTTCTGAGATGGTGGGTATGGGGAAAAGCCTGAGTAT-TCCATAACAATCCTACAAGGAATCCTGGTGATCACCCAAATTGAGAACCACTTTGGGAAGCAATCAATAGTGCCTAGGGTGAGATGGGGTCT
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           214500  253 +  18854210 I

a score=469539.000000
s hg38.chr6_GL000254v2_alt  1388448 48 +   4827813 TAAGTCCACATTTAAATGCTATTTTTTCTAATTTAAACATAAAGGACT
s panTro5.chr6             30261858 48 + 175400573 TAAGTCCACATTTAAATGCTATTTTTTCTAATTTAAACATAAAGGACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30492373 48 + 173848474 TAAGTCCACATTTAAATGCTATTTTTTCTAATTTAAACATAAAGGACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     198977 48 +   2037526 TAAGTCCACATTTAAATGCTATTTTTTCTAATTTAAACATAAAGGACT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74871306 48 + 122973662 TAAGTCCACATTTAAATGCTATTTTTTCTAATTTAAACATAAAGGACT
i nomLeu3.chr1a            C 0 I 59
s rheMac8.chr4             30742798 48 + 172585720 TAAGTTCACATTTAAATGCGATTTTTTCTAATTTAAACATAAAGGACT
i rheMac8.chr4             C 0 I 47
s macFas5.chr4             30039312 48 - 170955103 TAAGTTCACATTTAAATGCGATTTTTTCTAATTTAAACATAAATGACT
i macFas5.chr4             C 0 I 47
s macNem1.NW_012012100v1     288636 48 +   1495729 TAAGTTCACATTTAAATGCGATTTTTTCTAATTTAAACATAAAGGACT
i macNem1.NW_012012100v1   C 0 I 23
s cerAty1.NW_012002535v1     383715 48 -    863181 TAAGTTCACATTTAAATGCGATTTTTTCTAATTTAAACATAAAGGACT
i cerAty1.NW_012002535v1   C 0 I 23
s chlSab2.chr17            29539099 48 -  71996105 TAAGTTCACATTTAAATGCAATTTTTTCTAATTTAAACATAAAGGACT
i chlSab2.chr17            C 0 I 5
s manLeu1.NW_012107142v1     210872 48 -    735854 TAAGTTCACATTTAAATGCGATTTTTTCTAATTTAAACATAAAGGACT
i manLeu1.NW_012107142v1   C 0 I 123
s colAng1.NW_012115577v1     176503 48 -   1829203 taagttCACATTTAAATGCGATTTTTTCTAACTTAAACATAAAGGACT
i colAng1.NW_012115577v1   I 157 I 38
s calJac3.chr4             30352850 48 + 171630274 TATGTTCACATGTAAATGCTATTTTTTCTAATTTAAACATAAAGGAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           176350 48 +    515838 TATGTTCACATGTAAATGCTATTTTTTccaatttaaacataaaggaat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     810388 48 -   1771730 TATGTTCACATGTAAATGCTATTTTCTCTAATTTAAACATAAAGGAat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     292419 48 -    383796 TACGTTCACATGTAAATGCTCTTTTTTCTAATTTAAACATAAATGAAT
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           214500 253 +  18854210 I

a score=7400417.000000
s hg38.chr6_GL000254v2_alt  1388496 806 +   4827813 tctatctgtctatctatctatc-atctatctTCATTAGGCTGGTGTTTATTTTattttgggaaggtctgtgagaataggcttaaagctacatagctagaagcagcatctataatcccatcctaggtggagtctcacataggaatcactgcccctgatgctgggcacagatgtcactgttcataccaatgacactctaaagctagacactggaccttgcagatagaactgctatcacgactgctcctggcaactggacattgctgctgcaactcacaccacacttactaaaatgtgtgcacagt------accagcttatgtcaccaggctgagtcagaatccagcaagtggttatctgcctggtggaacctaagcctcatcccatatccagctgccagaatatttggaaaagtgagtttt--tCTTTCGTGGAAGAAGTTGGTGTCTGCTTCCTACAATGACTCTTTAAGTATGAAATTCTTTAAGTATGAAATCATACTCTTTAAGTATGAAATTCTCCCTAACATGG--AGAGGGTTCAGGTGCTGGGACACAGGAAGATAGAGTGGAAAAAGAATGAAAAAAAAAGTCAATTCCTAGAGCAGTAATCTGAGACTAGAACCTTATCTGGTATATCATAGACACTTGGGTTTTGCTGAATGAATCAGTGACTAATTAATTACAACTTTCAATTTATTTCCTTGATAGTCTGTTATGAAGTACAACTTTTTCCTGATC-AGTTTATACTCAGATAAGTAGAGTGGCACTGTGGGATGGTGAAATGATTGCTCAAAACTTATCTCTTGTTAGGATTTTT
s panTro5.chr6             30261906 804 + 175400573 tctacctgtctatctgtctatc-atctatctTCATTAGGTTGGTGTTTATTTTattttgggaaggtctgtgagaataggcttaaagctacatagctagaagcagcatctataatcccatcctaggtggagtctcacataggaatcactgcccctgatgctgggcacagatgtcactgttcataccaatgacactctaaagctagacac--gaccttgcagatagaactgctatcacgactgctcctggcaactggacatttctgctgcaactcacaccacacttactaaaatgtgtgcacagt------accagcttgtgtcaccaggctgagtcagaatccagcaagtggttatctgcctggtggaacctaagcctcatcccatatccagctgccagaatatttggaaaagtgagtttt--tCTTTTGTGGAAGAAGTTGGTGTCTGCTCCCTACAATGACTCTTTAAGTATGAAATTCTTTAAGTATGAAATCATACTCTTTAAGTATGAAATTCTCCCTAACATGG--AGAGGGTTCAGGTGCTGGGACACAGGAAGATAGAGTGGAAAAAGAATGAAAAAAAAAGTCAATTCCTAGAGCAGTAATCTGAGACTAGAACCTTATCTGGTATATCATAGACACTTGGGTTTTGCTGAATGACTCAGTGACTAATTAATTACATCTTTCAATTTATTTCCTTGATAGTCTGTTATGAAGTACAACTTTTTCCTGATC-AGTTTATACTCAGATAAGTAGAGTGGCACTGTGGGATGGTGAAATGATTGCTCAAAACTTATCTCTTGTTAGGATTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30492421 804 + 173848474 tctatctgtctatctgtctatc-atctatctTCATTAGGTTGGTGTTTATTTTattttgggaaggtctgtgagaataggcttaaagctacatagctagaagcagcatctataatcccatcctaggtggagtctcacataggaatcactgcccctgatgctgggcacagatgtcactgttcataccaatgacactctaaagctagacac--gaccttgcagatagaactgctatcacgactgctcctggcaactggacatttctgctgcaactcacaccacacttactaaaatgtgtgcacagt------accagcttgtgtcaccaggctgagtcagaatccagcaagtggttatctgcctggtggaacctaagcctcatcccatatccagctgccagaatatttggaaaagtgagtttt--tCTTTTGTGGAAGAAGTTGGTGTCTGCTCCCTACAATGACTCTTTAAGTATGAAATTCTTTAAGTATGAAATCATACTCTTTAAGTATGAAATTCTCCCTAACATGG--AGAGGGTTCAGGTGCTGGGACACAGGAAGATAGAGTGGAAAAAGAATGAAAAAAAAAGTCAATTCCTAGAGCAGTAATCTGAGACTAGAACCTTATCTGGTATATCATAGACACTTGGGTTTTGCTGAATGACTCAGTGACTAATTAATTACATCTTTCAACTTATTTCCTTGATAGTCTGTTATGAAGTACAACTTTTTCCTGATC-AGTTTATACTCAGATAAGTAGAGTGGCACTGTGGGATGGTGAAATGATTGCTCAAAACTTATCTCTTGTTAGGATTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     199025 789 +   2037526 tctatctgtctatctatctatc-atctatctTCATTAGGTTGGTGTTTATTTTattttgggaaggtctgtgagaataggcttaaagctacatagctagaagcagcatctataatcccatcctaggtggagtctcacataggaatcactgcccctgatgctgggcacagatgtcactgttcataccaatgatactctaaagctagacactggaccttgcagatagaactgctatcacgactgctcctggcaactggacattgctgctgcaactcacaccacacttactaaaatgtgtgcacagt------accagcttgtgtcaccaggctgagtcagaatccagcaagtggttatctgcctggtggaacctaagcctcatcccatatccagctgccagaatatttggaaaagtgagtttt--tCTTTTGTGGAAGAAGTTGGTGTCTGCTTCCTACAATGAC----------------TCTTTAAGTATGAAATCATACTCTTTAAGTATGAAATTCTCCCTAACATGG--AGAGGGTTCAGGTGCTGGGACACAGGAAGATAGAGTGGAAAAAGAATGAAAAAAAAAGTCAATTCCTAGAGCAGTAATCTGAGACTAGAACCTTATCTGGTATATCATAGACACTTGGGTTTTGCTGAATGAATCAGTGACTAATTAATTACATCTTTCAATTTATTCCCTTGATAGTCTGTTACGAAGTACAACTTTTTCCTGATC-AGTTTATACTCAGATAAGTAGAGTGGCACTGTGGGATGGTGAAATGATTGCTCAAAACTTCTCTCTTGTTAGGA-TTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74871413 784 + 122973662 tctatctatctatctatctatc-atctatctTCATTAGGTTGGTGTTTATTTTattttgggaaggtctgtgagaataggcttaaagctacatagctagaagcagcatctataatcccatcctaggtggagtctcacataggaatcactgcccctgatgccgggcacagatgtcactgttcataccaatgacactctaaagctagacactggaccttgcagatagaactgctatgatgactgctcctggcaactggacatcgctgctgcaactcacaccacacttactaaaatgtgtgcacagt------accagcttgtgtcaccagcctgagtcagaatccagcaagtggttatctgcctggtggaacctaagcctcaccccatatccagctgccagaatatttggaaaagtgagtttt--tCTTTTGTGGAAGAAGTTGGTGTCCGCTTCCTACAATGAC----------------TCTTTAAGTATGAAATCATACTCTTTAAGTATGAAATTCTCCCTAACATGG--AGAGGGTTCAGGTGCTGGGACACAGGAAGATAGAGTGGAAAAAGAATG--AAAAAAAGTCAATTCCTAGAGCAGTAATCTGAGActagaaccttatctggtacatcatagacacttgggtttggttgaatgaatgagtGACTAATTAATTACATCTTTCA----ATTCCCTTGATAGTCTGTTATGAAGTACAGATTTTTCCTAATC-AGTTTATACTCAGATAAGTAGAGTGGCATTGTGGGATGGTGAAATGATTGCTCAAAACTTATCTCTTGTTAGGATTTTT
i nomLeu3.chr1a            I 59 C 0
s rheMac8.chr4             30742893 805 + 172585720 tctatctatctatctatctatctatctatctTCATTAGGTTGGCGTTTATTTTATtttgggaaggcctgtgagaataggcttaaagctacatagctaggatctgaatctataatcccatcctaggcggagtctcacataggaatcactgcccctgatgctgggcagagatgtcactgttcataccaatggaactctaaagctagacactggaccttgcagatagaactgctgtcacaactgctcctggcaattggacatcactgctgccactcacaccacacttactaaaatgtgtgctcagt------accagcttgtgtcaccaggccgagtcagaatccagcaaatggttatctg-ttggtggaacctaagcctcatcccatatccagctgtcagaatgtttggaaaagtgagtttttctcttttgtggaagGAGTTGGTGTCTGCCTCCTACGATGACTCTTTAAGTATGAAATTCTTTAAGTATGAAATCATactctttaagtatgaaattct-cctaacatggaaagagggttcaggtgctgggACACCGGAAGATAGAGTGGAAAAAGAATG--AAAAAAAGTCAATTCCTAGAGCCGTAATCTGAGACTAAAACTGCATCTGGTACATCATAGACACTTAGGTTTGGTTGCATGAATGAGTGACTAATTAATTACATCTTTCAACTTATTCCCTTGATAGTCAGTTATGAAGTACAGCTTTTCCCTGATC-AGTTTATAATCAGATAAGTAGAATGGCATTGTGAAATGGTGAAATGATTGCTCAAAACT--TCTCTTGTTAGGATTTTT
i rheMac8.chr4             I 47 C 0
s macFas5.chr4             30039407 805 - 170955103 tctatctatctatctatcaatctatctatctTCATTAGGTTGGCATTTATTTTATTTTgggaaggcctgtgagaataggcttaaagctacatagctaggatctgaatctataatcccatcctaggcggagtctcacataggaatcactgcccctgatgctgggcagagatgtcactgttcataccaatggaactctaaagctagacactggaccttgcagatagaactgctgtcacaactgctcctggcaattggacatcgctgctgccactcacaccacacttactaaaatgtgtgctcagt------accagcttgtgtcaccaggccgagtcagaatccagcaaatggttatctg-ttggtggaacctaagcctcatcccatatccagctgtcagaatgtttggaaaagtgagtttttctcttttGTGGAAGGAGTTGGTGTCTGCCTCCTACGATGACTCTTTAAGTATGAAATTCTTTAAGTATGAAATCATACTCTTTAAGTATGAAATTCT-CCTAACATGGAAAGAGGGTTCAGGTGCTGGGACACCGGAAGATAGAGTGGAAAAAGAATG--AAAAAAAGTCAATTCCTAGAGCCGTAATCTGAGACTAAAACTGCATCTGGTACATCATAGACACTTGGGTTTGGTTGCATGAATGAGTGACTAATTAATTACATCTTTCAACTTATTCCCTTGATAGTCAGTTATGAAGTACAGCTTTTCCCTGATC-AGTTTATAATCAGATAAGTAGAATGGCATTGTGAAATGGTGAAATGATTGCTCAAAACT--TCTCTTGTTAGGATTTTT
i macFas5.chr4             I 47 C 0
s macNem1.NW_012012100v1     288707 805 +   1495729 tctatctatctatctatctatctatctatctTCATTAGGTTGGCGTTTATTTTATtttgggaaggcctatgagaataggcttaaagctacatagctaggatctgaatctataatcccatcctaggcggagtctcacataggaatcactgcccctgatgctgggcagagatgtcactgttcataccaatggaactctaaagctagacactggaccttgcagatagaactgctgtcacagctgctcctggcaattggacatcgctgctgccactcacaccacacttactaaaatgtgtgcacagt------accagcttgtgtcaccaggccgagtcagaatccagcaaatggttatctg-ttggtggaacctaagcctcatcccatatccagctgtcagaatgtttggaaaagtgagtttttctcttttgtggaagGAGTTGGTGTCTGCCTCCTACGATGACTCTTTAAGTATGAAATTCTTTAAGTATGAAATCGTactctttaagtatgaaattct-cctaacatggaaagagggttcaggtgctgggACACCGGAAGATAGAGTGGAAAAAGAATG--AAAAAAAGTCAATTCCTAGAGCCGTAATCTGAGACTAAAACTGCATCTGGTACATCATAGACACTTGGGTTTGGTTGCATGAATGAGTGACTAATTAATTACATCTTTCAACTTATTCCCTTGATAGTCAGTTATGAAGTACAGCTTTTCCCTGATC-AGTTTATAATCAGATAAGTAGAATGGCATTGTGAAATGGTGAAATGATTGCTCAAAACT--TCTCTTGTTAGGATTTTT
i macNem1.NW_012012100v1   I 23 C 0
s cerAty1.NW_012002535v1     383786 808 -    863181 tctatctatctatctatctatctatctatctTCATTAGGTTGGCGTTTATTTTATtttgggaaggcctgtgagaataggcttaaagctacatagctaggatctgaatctataatcccatcctaggcggagtctcacataggaatcactgcccctgacgctgggcagagatgtcactgttcataccaatggaactctaaagctagacactggaccttgcagatagaactgctgtcacagctgctcctggcaattggacatcgctgctgccactcacaccacacttactaaaatgtgtgcacagt------accagcttgtgtcaccaggccgagtcagaatccagcaaatggttatctg-ttggtggaacctaagcctcatcccatatccagctgtcagaatgtttggaaaagtgagtttttctcttttgtggaagGAGTTGGTGTCTGCCTCCTACGATGACTCTTTAAGTATGAAATTCTTTAAGTATGAAATCATACTCTCTAAGTATGAAATTCT-GCTAACATGGAAAGAGGGTTCAGGTGCTGGGACACCGGAAGATAGAGTGGAAAAAGAATG-AAAAAAAAGTCAATTCCTAGAGCTGTAATCTGAGACTAAAACTGCATCTGGTACATCATAGACACTTGGGTATGGTTGCATGAATGAGTGACTAATTAATTACATCTTTCAACTTATTCCCTTGATAGTCAGTTATGAAGTACAGCTTTTCCCTGATC-AGTTTATAATCAGATAAGTAGAATGGCATTGTGAAATGGTGAAATGATTGCTCAAAACTTATCTCTTGTTAGGATTTTT
i cerAty1.NW_012002535v1   I 23 I 1297
s chlSab2.chr17            29539152 803 -  71996105 CAtatctatctacctatcaatctatccatctTCATTAGGTTGGCGTTTATTTTATtttgggaaggcctgtgagaataggcttaaagctacatagctaggatctgaatctataatcccatcctaggcggagtctcacataggaatcactgcccctgacgctgggcagagatgtcactgttcataccaatggaactctaaagctagacactggaccttgcagacagaactgctgtcacaactgctcctggcaattggacatcgctgctgccactcacaccacacttactaaaatgtgtgcacagt------accagcttgtgtcaccaggccgagtcagaatccagcaaatggttatctg-ttggtggaacctaagcctcatcccatatccagctgtcagaatgtttggaaaagtgagtttttctcttttGTGGAAGGAGTTGGTGTCTGCCTCCTACGATGACTCTTTAAGTATGAAATTCTTTAAGTATGAAATCATACTCTTTAAGTATGAAATTCT-CCTAACATGGAAAGACGGTTCAGGTGCTGGGACACCGGAAGATAGAGTGGAAAAAGAATG--AAAAAAAGTCAATTCCTAGAGCCGTAATCTGAGACTAAAACTGCATCTGGTACATCATAGACACTTGGGTTTGGTTGCATGAATGAGTGACTAATTAATTACATCTTTCAACTTATTCCCTTGAT----AGTTATGAAGTACAGCTTTTCCCTGATC-AGTTTATAATCAGATAAGTAGAATGGCATCGTGAAATGGTGAAATGATTGCTCAAAACTTATCTCTTGTTAGGATTTTT
i chlSab2.chr17            I 5 C 0
s manLeu1.NW_012107142v1     211043 805 -    735854 tctatctatctatctatctatctatctatctTCATTAGGTTGGCGTTTATTTTATTTTgggaaggcctgtgagaataggcttaaggctacatagctaggatctgaatctataatcccatcctaggcggagcctcacgtaggaatcactgcccctgatgctgggcagagatgtcactgttcataccaatggaactctaaagctagacactggaccttgcagatagaactgctgtcacaactgctcctggcaattggacatcgctgctgccactcacaccacacttactaaaatgtgtgcacagt------atcagcttgtgtcaccaggccgagtcagaatccagcaaatggttatctg-ttggtggaacctaagcctcatcccatatccagctgtcagaatgtttggaaaagtgagtttttctcttttgtggaagGAGTTGGTGTCTGCCTCCTATGATGACTCTTTAAGTATGAAATTCTTTAAGTATGAAATCATactctttaagtatgaaattct-cctaacatggaaagagggttcaggtgctgggACACCGGAAGATAGAGTGGAAAAAGAATG--AAAAAAAGTCAATTCCTAGAGCCGTAATCTGAGACTAAAACTGCATCTGGTACATCATAGACATTTGGGTTTGGTTGCATGAATGAGTGACTAATTAATTACATCTTTCAACTTATTCCCTTGATAGTCAGTTATGAAGTACAGCTTTTCCCTGATC-AGTTTATAATCAGATAAGTAGAATGGCATTGTGAAATGGTGAAATGATTGCTCAAAACT--TTTCTTGTTAGGATTTTT
i manLeu1.NW_012107142v1   I 123 C 0
s colAng1.NW_012115577v1     176589 788 -   1829203 tctatctatctatctctctctctatctatTTTCATTAGGTTGGCGTTTATTTTATtttgggaaggcctgtgagaataggcttaaagctacgtagctacgatctgaatcta-aatcccatcctaggcagagtctcacataggaatcactgcccctgatgctgggcagag------------------atggaactctaaagctagacactggaccttgcagatagaactgctgtcacaactgctcctggcaaatggacatcgctgctgccactcacaccacacttactaaaatgtgtgcacagt------accagcttgtgtcaccaggccaagtcagaatccagcaaatggttatctg-ttggtggaacctaagcctcatcccatatccagctgtcagaatgtttggaaaagtgagtttttctcttttgtggaagGAGTTGGTGTCTGCCTCCTACGATGACTCTTTAAGTGTGAAATTCTTTAAGTATGAAATCATACTCTTTAAGTATGAAATTCT-GCTAACATGGAAAGAGGGTTCAGGTGCTGGGACACTGGAAGATAGAGTGGAAAAAGAATG--AAAAAAAGTCAATTCCTAGAGCCGTAATCTGAGACTAAAACTGCATCTGGTACATCATAGACACTTGGGTTTGGTTGCATGAATGAGTGACTAATTAATTACATCTTTCAACTTACTCCCTTGATAGTCAGTTATGAAGTACTGCTTTTCCCTGATC-AGTTTATAATCAGGTAAGTAGAATGGCATTGTGAAATGGTGAAATGATTGCTCAAAACTTATCTCTTGTTAGGATTTTT
i colAng1.NW_012115577v1   I 38 C 0
s calJac3.chr4             30352898 743 + 171630274 --------T-----TATCTATCTATCTATATTAATTAGGTTGGTGTTTATTTCATTTTGGGAAGGCCTGTGTGAATAGGTTTAAGG----------AGGAGCAGAATCTA-AATCACACCCTAGGTGGAGTCTCACATaggaatcactgcccctgatgccagacacagatgtcactgttcataccaatgagactctaaagctggacactggaccctgcagatagaactgctgtcactactgctactggcaattggacatcgctgctgccactcacaccatacttagtaaaatgtgtgcacagtttactgaccagcttgtgtcaccaggccaaatcagaatccagcaagtgg-tatctgcctggtggaacctaagcctcatacc--atccagctgccag-atgtttggaaaagtgagtttttctcttttgtggaaggagttggtgtctgcctcctaccatgac-----------------------------------------taggtaagaaattct-cctaacatggaaagtgggttcaggtgctgggACACAGGAAGGTAGGGTAGAAAAAGAATG--AAAAAAAGTCTATTCCTAGAGCAGTAATCTGAAACTAGAACCTTATCTGGTACATCATAGACACTTGGGTTCAGTTGCA-GAATGAGTGACTAATGAATAACATCTTTCAACTTATTCCCTTGATAGTC-ATTATGAGGTACAGCTTTTTTCTGATC-AGTTTATATTCAGATAAGTAGAGTAGCATTGTGGGATGGTGAAATGATTGCTCAAAACTTATCTCTTGTTACGATTTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           176398 744 +    515838 --------t---------tatctatctatattaagcaggtcggtgttt-----attttgggaaggcctacaagaataggtttaaggctacatagccaggagcagaatctataatcacaccctaggtggagtctcacataggaatcactgcccctgatgccaggcacagatgtcactgttcataccaatgagattctaaagctggacactggaccctgcagacagaactgttgtcaatactgctgctggcaatcggacattgctgctgccactcacaccacacttagtaaaatgtgcgcacagt------accagcttgtgtcaccaggccaagtcagaatccagcaagtggttatctgcctggtggaacctaagcctcataccatatccagctgccag-atgtttggaaaagtgagtttttctcttttgtggaaggagttggtgtctgcctcctaccatgac-----------------------------------------taagtatgaaattct-cctaacatggaaagtgggttcaggtgctgggACACAGGAAGATAGGGTGGAAAAAGAATG--AAAAAATGTCTATTCCTAGAGCAGTAATCTGAGACTAGAACCTCATCTGGTACATCATAGACACTTGGGTTCGGTTGCATGAATGAGTGACTAATGAATTACATCTTTCAACTTAGTCCCTTGATAGTCTGTTATGAGGTACAACTTTTTTCTGATC-AGTTTATATTCACATAAGTAGAGTGGCATTGTGGGATGGTGAAATGATTGCTCAAAACTTATCTATTGTTAGGATTTTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     810436 760 -   1771730 --------t-tatctatctatctatctatATTAATTAGATTGGTGTTTATCTTATtttgggaaggcctgtgagaatacgtttaaggctacatagccaggagcagaatctataattacaccctaggtggagtctcacataggaattactgcccctgatgccaggcacagatgtcactgttcataccaatgagactctaaagctggacaatggaccctgcagacagaactgctgtcactactgctgctggtaattggacatcactgctgccactcacaccacacttagtaaaatgtgtgcacagt------accagcttgtgtcaccaggccaagtcagaatccagcaagtggttatctgcctggtgaaacctaagcctcataccacatccagctgccag-atgtttgg-aaagtgaattcatctcttttgtgaaaggagttggtgtctgcctcctatcatgac-------------------------------------tctgtaagtatgaaactct-cctaacatataaagtgggttcaggtgctgggACACAGGAAGATAGGGTGGAAAAAGAATG--AAAAAAAGTCTATTCCTAGAGCAGTAATCTGAGACTAGAACCTTATCTGGTACATCATAGACACTTGGGTTCGGTT-CATGAATGAGTGACTAATGAATTACATCTTTCAACTTATTCCCTTGATAGTCTGTTATGAGGTACAACCTTTTTCTGATCAAGTTTATATTCAGATAAGTAGAGTGGCATTGTGGGATGGTGAAATGATTGCTCAAAACTTATCTCTTGTTAGGGTTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     292467 755 -    383796 --------T-----TATCTATCTATCTATATTAATTAGGTTGGTTTTTATTTTATtttgggaaggcctgtgagaataggtttaaggctacatagccaggagcagaatctataatcacaccctaggtggagtctcacataggaatcactgcccctgatgccaggcactgatgtcactgttcataccaatgagactctaaagctggacactggaccctgcagatagaactgctgtcactactgctgctgacaattggacatcgctgctaccactcacaccacacttagtaaaatgtgtgcacagt------accagcttgtgtcatcaggccaagtcagaatccagcaagtggttatctgcccggtggaacctaagcctcataccatatccagctgccag-atgtttggaaaagtgagtttttctcttttgcagaagcagttggtgtctgcctcctaccatgac-------------------------------------tctgtaagtatgaaattct-cctaacatgtaaagtgggttcaggtgctgggACACAGGAAGATACAGTGGAAAAAGAATG--AAAAAAAGTCTATTCCTAGAGCAGTAATCTGAGTCTAGAACCTTATCTGGTACATCATAGACACTTGGGTTCGGTTGCATGAATGAGTGACTAATGAATTACATCTTTCAACTTATTCCCTTGATAGTCTGTTATGAGGTACAACTTTTTTCTGATC-AGTTTATATTCAGTTAAGTAGAGTGGCATTGTGGGATGGTGAAATGATTGCTCAAAACTTATCTC--ATTAGGATTTTT
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           214500 253 +  18854210 I

a score=9555.000000
s hg38.chr6_GL000254v2_alt  1389302 1 +   4827813 T
s panTro5.chr6             30262710 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30493225 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     199814 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74872197 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30743698 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30040212 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     289512 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29539955 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     211848 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     177377 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30353641 1 + 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           177142 1 +    515838 T
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     811196 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     293222 1 -    383796 T
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           214500 253 +  18854210 I
e cerAty1.NW_012002535v1     384594 1297 -    863181 I

a score=355194.000000
s hg38.chr6_GL000254v2_alt  1389303 37 +   4827813 AAAATCTAGATGTCTAAGACTTCAGAGGACCTGTGTA
s panTro5.chr6             30262711 37 + 175400573 AAAATCTAGATGTCTAAGACTTCAGAGGACCTGTGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30493226 37 + 173848474 AAAATCTAGATGTCTAAGACTTCAGAGGACCTGTGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     199815 37 +   2037526 AAAATCTAGATGTCTAAGACTTCAGAGGACCTGTGTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74872198 37 + 122973662 TAAATCTAGATGTCTAAGACTTCAGAGGACCTGTGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30743699 37 + 172585720 TAAATCTAGATTTCTAAGACTTCAGAGGACCTGTGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30040213 37 - 170955103 TAAATCTAGATTTCTAAGACTTCAGAGGACCTGTGTA
i macFas5.chr4             C 0 I 307
s macNem1.NW_012012100v1     289513 37 +   1495729 TAAATCTAGATTTCTAAGACTTCAGAGGACCTGTGTA
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29539956 37 -  71996105 AAAATCTAGATTTCTAAGACTTCAGAGGACCTGTGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     211849 37 -    735854 TAAATCTAGATTTCTAAGACTTCAGAGGACCTGTGTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     177378 37 -   1829203 TAAATCTAGATTTCTAAGACTTCAGAGGACCTGTGTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30353642 37 + 171630274 AAAATCTAGATTTCTAAGACTTCTGAAGACCTGTGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           177143 37 +    515838 TAAATCTAGATTTCTAAGACTTCAGAGGACTTGTGTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     811197 37 -   1771730 AAAATCTAGATTTCTAAGACTTCAGAGGACCTGTGTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     293223 37 -    383796 AAAATCCAGATTTCTAAGACTTCAGAGGACCTGTGTG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           214753 37 +  18854210 aaaGTTCAGATCACTAAGACTTCATAGGTGCCATGTA
i otoGar3.GL873550         I 253 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e cerAty1.NW_012002535v1     384594 1297 -    863181 I

a score=136230.000000
s hg38.chr6_GL000254v2_alt  1389340 13 +   4827813 TACACTAAGATtt
s panTro5.chr6             30262748 13 + 175400573 TACACTAAGATtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30493263 13 + 173848474 TACACTAAGATtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     199852 13 +   2037526 TACACTAAGATTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74872235 13 + 122973662 TACATGAAGATtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30743736 13 + 172585720 TACACTAAGAttt
i rheMac8.chr4             C 0 I 307
s macFas5.chr4             30040557 13 - 170955103 TACACTAAGATtt
i macFas5.chr4             I 307 C 0
s macNem1.NW_012012100v1     289550 13 +   1495729 TACACTAAGAttt
i macNem1.NW_012012100v1   C 0 I 305
s chlSab2.chr17            29539993 13 -  71996105 TACACTAAGAttt
i chlSab2.chr17            C 0 I 321
s manLeu1.NW_012107142v1     211886 13 -    735854 TACACTAAGAttt
i manLeu1.NW_012107142v1   C 0 I 313
s colAng1.NW_012115577v1     177415 13 -   1829203 TACACTAAGAttt
i colAng1.NW_012115577v1   C 0 I 308
s calJac3.chr4             30353679 13 + 171630274 TACACTAAGATTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           177180 13 +    515838 TACACTAAGATTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     811234 13 -   1771730 TACACTAAGATTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     293260 13 -    383796 TACACTAAGATTT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           214790 13 +  18854210 TATACTAAAATTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e cerAty1.NW_012002535v1     384594 1297 -    863181 I

a score=53850.000000
s hg38.chr6_GL000254v2_alt  1389353 5 +   4827813 tatac
s panTro5.chr6             30262761 5 + 175400573 tatac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30493276 5 + 173848474 tatac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     199865 5 +   2037526 TATAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74872248 5 + 122973662 tatac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30744056 5 + 172585720 tatac
i rheMac8.chr4             I 307 C 0
s macFas5.chr4             30040570 5 - 170955103 tatac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     289868 5 +   1495729 tatac
i macNem1.NW_012012100v1   I 305 C 0
s chlSab2.chr17            29540327 5 -  71996105 tatac
i chlSab2.chr17            I 321 C 0
s manLeu1.NW_012107142v1     212212 5 -    735854 TATAC
i manLeu1.NW_012107142v1   I 313 C 0
s colAng1.NW_012115577v1     177736 5 -   1829203 TATAC
i colAng1.NW_012115577v1   I 308 C 0
s calJac3.chr4             30353692 5 + 171630274 TATAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           177193 5 +    515838 TATAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     811247 5 -   1771730 TATAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     293273 5 -    383796 TATAC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           214803 5 +  18854210 TACAC
i otoGar3.GL873550         C 0 I 326
e mm10.chr17               58018469 2227 -  94987271 I
e cerAty1.NW_012002535v1     384594 1297 -    863181 I

a score=57330.000000
s hg38.chr6_GL000254v2_alt  1389358 6 +   4827813 taatat
s panTro5.chr6             30262766 6 + 175400573 taatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30493281 6 + 173848474 taatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     199870 6 +   2037526 TAATAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74872253 6 + 122973662 taatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30744061 6 + 172585720 taatat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30040575 6 - 170955103 taatat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     289873 6 +   1495729 taatat
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29540332 6 -  71996105 taatat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     212217 6 -    735854 TAATAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     177741 6 -   1829203 TAATAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30353697 6 + 171630274 TAATAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           177198 6 +    515838 TAATAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     811252 6 -   1771730 TAATAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     293278 6 -    383796 TAATAT
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           214808 326 +  18854210 I
e cerAty1.NW_012002535v1     384594 1297 -    863181 I

a score=580515.000000
s hg38.chr6_GL000254v2_alt  1389364 63 +   4827813 ttatatttctttgtatatGCACATATTTTCTGGAAAGAATATCTGTGACATTTAT--GTTTTTGT
s panTro5.chr6             30262772 63 + 175400573 ttatatttctttgtatatGCACATATTTTCTGGAAAGAATATCTGTGACATTTAT--GTTTTTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30493287 63 + 173848474 ttatatttctttgtatatGCACATATTTTCTGGAAAGAATATCTGTGACATTTAT--GTTTTTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     199876 61 +   2037526 T--TATTTCTTTGTATATGCACATATTTTCTGGAAAGAATATCTGTGACATTTAT--GTTTTTGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74872259 63 + 122973662 ttatatttctttgtatatGCACATATTTTCTGGAAAGAATATCTGTGACATTTAT--GTTTTTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30744067 63 + 172585720 ttatatttctttgtatatGCACATATTTTCTGGAAAGAGCATCTGTGACATTTAT--GCTTTTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30040581 63 - 170955103 ttatatttctttgtatatGCACATATTTTCTGGAAAGAGCATCTGTGACATTTAT--GCTTTTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     289879 51 +   1495729 ttatatttctttgtatatGCA------------AAAGAGCATCTGTGATATTTAT--GCTTTTGT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29540338 63 -  71996105 ttatatttctttgtatatGCACGTATTTTCTGGAAAGAGCATCTGTGACATTTAT--GCTTTTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     212223 63 -    735854 TTATATTTCTTTGTATATGCACGTATTTTCTGGAAAGAGCATCTGTGACATTTAC--GGTTTTGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     177747 63 -   1829203 TTATATTTCTTTGTATATGCACGTATTTTCTGGAAAGAGCATCTGTGACATTTAT--GCTTTTGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30353703 63 + 171630274 TTATATTTCTTTGTATATGCACATATTTTCTGGAAAGAGTATCTATGACATTCAT--GTTTTTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           177204 63 +    515838 TTATATTTCTTTGTATATGCACATATTTTCTGGAAAGAGTATCTGTGACATTTAT--GTTTTTGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     811258 63 -   1771730 TTATATGTCTTTGCATATGCACATATTTTCTGGAAAGAGTATCTGTGACATTTAT--GTTTTCGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     293284 63 -    383796 TTCTATTTCTTCGTATATGCACATATTTTATGGAAAGAGTATCTGTGACATTTAT--GTTTTTGT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           215134 65 +  18854210 TCACAATTTTTTGCACATGCACATATTTTCTGGGTAGAGTACCTACGGTGTTTATTAGTTTTTAT
i otoGar3.GL873550         I 326 I 9
e mm10.chr17               58018469 2227 -  94987271 I
e cerAty1.NW_012002535v1     384594 1297 -    863181 I

a score=6529712.000000
s hg38.chr6_GL000254v2_alt  1389427 760 +   4827813 AACCCtattttaggaaaccctctctcaaaccacattttccctctgctctca---taccacaacaatcatcaacacagaagacttctgtgaccaaagatgtgggggtttttccccacacaccaagcagtggacaccagctgggtatcctccagttcaatgtcaacactgtctacctggagatagcatcatatcccacagattgggggcttagtccccaagactactccacatcagacaccaatcgca-----------------------------------------gaagttcccaccacccac--tctgggcttcactaatttgctggagtagctcacagaattcagggaaacatttatgtttactagtttattataaaggatattacaaaggatacagatgaaaatacgtgtagggtgaggtatcagggaaggagcatggagcttccatgcccttcctgggcacaccaacctccaaaaacctccacttgttcagctacctggaagctccctgaacccagttctcctgggtttttatggaagcttcgtGACACcagcattccttctcccaatgtatagtgtgggaccctctccagagagggtcttaagacccataatcagaaaggcagaagattagagtcctgccttggggcaggtgaaatgaggccagaagagagattctgattcctgaggcctgccgaggccgaacacacccaatattattacaaaagaccgaaacaagggaatataggagctaggaaccaggaactgtggccaaaaaccaatctataacaccacaCACCCC
s panTro5.chr6             30262835 758 + 175400573 AACCCtattttaggaaaccctctctcaaaccacattttccctctgctctca---taccacaacaatcatcaacacagaagacttctgtgaccaaaggtgtgggggtttttccccacacaccaagcagtggaca-cagctgggtatcctccagttcaatgtcaacactgtctacctggagatagcatcatatcccacagattgggggctta-tccccaagactactccacatcagacaccaatcgca-----------------------------------------gaagttcccaccacccac--tctgggcttcactaatttgctggagtagctcacagaattcagggaaacatttatgtttactagtttattataaaggatattacaaaggatatagatgaaaatacgtgtagggtgaggtatcagggaaggagcatggagcttccatgcccttcctgggcacaccaacctccaaaaacctccacttgttcagctacctggaagctccctgaacccagttctcctgggtttttatggaagcttcgtGACACcagcattccttctcccaatgtatagtgtgggaccctctccagagagggtcttaagacccataatcagaaaggcagaagattagagtcctgccttggggcaggtgaaatgaggccagaagagagattctaattcctgaggcctgccgaggccgaacacacccaatattattacaaaagaccgaaacaagggaatataggagctaggaaccaggaactgtggccaaaaaccaatctataacaccacaTACCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30493350 758 + 173848474 AACCCtattttaggaaaccctctctcaaaccacattttccctctgctctca---taccacaacaatcatcaacacagaagacttctgtgaccaaaggtgtgggggtttttccccacacaccaagcagtggaca-cagctgggtatcctccagttcaatgtcaacactgtctacctggagatagcatcatatcccacagattgggggctta-tccccaagactactccacatcagacaccaatcgca-----------------------------------------gaagttcccaccacccac--tctgggcttcactaatttgctggagtagctcacagaattcagggaaacatttatgtttactagtttattataaaggatattacaaaggatacagatgaaaatacgtgtagggtgaggtatcagggaaggagcatggagcttccatgcccttcctgggcacaccaacctccaaaaacctccacttgttcagctacctggaagctccctgaacccagttctcctgggtttttatggaagcttcgtGACACcagcattccttctcccaatgtatagtgtgggaccctctccagagagggtcttaagacccataatcagaaaggcagaagattagagtcctgccttggggcaggtgaaatgaggccagaagagagattctaattcctgaggcctcccgaggccgaacacacccaatattattacaaaagaccgaaacaagggaatataggagctaggaaccaggaactgtggccaaaaaccaatctataacaccacaTACCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     199937 758 +   2037526 AACCCtattttaggaaaccctctctcaaaccacattttccctctgctctca---taccacaacaatcatcaacacagaagacttctgtgaccaaaggtgtgggggtttttccccacacaccaagcagtggacaccagctgggtatcctccagttcaatgtcaacactgtctacctggagatagcatcatatcccacagattgggggcttagtccccaagactactccccatcagacaccaatcgca-----------------------------------------gaagttcccaccacccac--tctgggcttcactaatttgctggagtagctcacagaattcagggaaacatttatgtttactagtttattataaaggatattacaaaggatacagatgaaaatatgtgtagggtgaggtatcagggaaggagcatggagcttccatgcccttcctgggcacaccaacctccaaaaacctccacttgttcagctacctggaagctccctgaacccagttctcctgggtttttacggaagcttcGTGACACcagcattccttctcccaatgtatagtgtgggaccctctcc--agagggtcttaagacccataatcagaaaggcagaggattagcgtcctgccttggggcaggtgaaatgaggccagaagagagattctgactcctgaggcctgccgaggccgaacacacccaatattattacaaaagaccgaaacaagggaatataggagctaggaaccaggaattgtggccaaaaaccaatctataacaccacaTACCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74872322 763 + 122973662 AACCCtattttaggaagccctctctcaaaccacattttccctctgctgtcacaccaccacaacaatcatcaacacagaagacttctgtgaccaaagatgtgggggtttttccccacacaccaagcagtggacaccagctgggtatcctccagttcaatgtcgacactatctacctggagatagcatcatatcccacagattgggggcttagtccccaagaccactccacatcagacaccagttgca-----------------------------------------ggagttcccaccacccgc--tttgggcttcactaattcgccggagtagctcacagaattcagggaaacatttatgtttactagtttattataaaggatattacaaaggatacagatgaaaatacatgtagggtgaggtatcaggcaaggagcacggagcttccatgcccttcctgggcacaccaccctccaaaaacctccacttgttcagttacctggaagctccctgaacccagttctcctgagtttttatggaagcttcatGACACcagcattccttctcccaatgtatagtgtgggatcctctctggagagggtcttaagacccataatcagaaaggcagaagattagagtcctgccttggggcaggtgaaatgaggccagaagagagattctgattcctgaggcctgctgaggcctaacacacccagtattattacaaaagaccaaaacaagggaatataggagctaggaaccaggaactgtggccaaaaaccaatctataacaccacaTACCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30744130 763 + 172585720 AATCCtattttaggaaaccctctctcaaaccacatttttcctctgctctcacaccaccacaacaatcatcaacacagaagacttctgtgaccaaaggtgtggaggtttttccccacactccaagcagtggaaatcagctgggtatcctccagttcaacgtcaacactatctacctggagatagtatcatatcccacagattgggggcttagtccccaagactactccacatgagacaccaatcaca-----------------------------------------ggagttcccaccacctgc--tttgggcttcactaatttgctggagtaactcacagaattcaggaaaacatttatgtttactagtttattataaaggatattacaaaggatacagatgaaaatacgtgtagggtgaggtatctgggaagcagcatggagcttccatgcccttcctggacacaccactctcctaaaacctccacttgttcagctatctggaagctccctgaacccagttctcctgggtttttacagaagcttcatGACGCcagcattccttctcccaaggtatagtgtgggaccctctgtggagagggtcttaagacccataatcagaaaggcagaagattagagtcctgccttggggcaggtgaaatgaggccagaagagagattctgattcctgaggcctgctgaggcctaacacacccaacattattacaaaagactgtaccgagggaatataggagctaggaaccagtaactatggccaaaaaccaataaataacaccacaTACCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30040644 763 - 170955103 AATCCtattttaggaaaccctctctcaaaccacatttttcctctgctctcacaccaccacaacaatcatcaacacagaagacttctgtgaccaaaggtgtggaggtttttccccacactccaagcagtggaaatcagctgggtatcctccagttcaacgtcaacactatctacctggagatagtatcatatcccacagattgggggcttagtccccaagactactccacatgagacaccaatcaca-----------------------------------------ggagttcccaccacctgc--tttgggcttcactaatttgctggagtaactcacagaattcaggaaaacatttatgtttactagtttattataaaggatattacaaaggatacagatgaaaatacgtgtagggtgaggtatctgggaagcagcatggagcttccatgcccttcctggacacaccaccctcctaaaacctccacttgttcagctatctggaagctccctgaacccagttctcctgggtttttacagaagcttcatgacgccagcattccttctcccaaggtatagtgtgggaccctctgtggagagggtcttaagacccataatcagaaaggcagaagattagagtcctgccttggggcaggtgaaatgaggccagaagagagattctgattcctgaggcctgctgaggcctaacacacccaacattattacaaaagactgtaccgagggaatataggagctaggaaccagtaactatggccaaaaaccaataaataacaccacaTACCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     289930 763 +   1495729 AATCCtattttaggaaactctctctcaaaccacatttttcctctgctctcacactaccacaacaatcatcaacacagaagacttctgtgaccaaaggtgtggaggtttttccccacactccaagcagtggaaatcagctgggtatcctccagttcaacgtcaacactatctacctggagatagtatcatatcccacagactgggggcttagtccccaagactactccacatgagacaccaatcaca-----------------------------------------ggagttcccaccacctgc--tttgggcttcactaatttgctggagtaactcacagaattcaggaaaacatttatgtttactagtttattataaaggatattacaaaggatacagatgaaaatacgtgtagggtgaggtatctgggaagcagcatggagcttccatgcccttcctggacacaccaccctcctaaaacctccacttgttcagctatctggaagctccctgaacccagttctcctgggtttttacagaagcttcatGACGCcagcattccttctcccaaggtatagtgtgggaccctctgtggagagggtcttaagacccataatcagaaaggcagaagattagagtcctgccttggggcaggtgaaatgaggccagaagagagattctgattcctgaggcctgctgaggcctaacacacccaacattattacaaaagactgtaccgagggaatataggagctaggaaccagtaactatggccaaaaaccaataaataacaccacaCACCCC
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29540401 761 -  71996105 AATCCtattttaggaaaccctctctcaaaccacatttttcctctgctctcacaccaccacaacaatcatcaacacagaagacttctgtgaccaaaggtgtggaggtttttccccacactccaagcagtggaaatcagctgggtatcctccagttcaacatcaacactatctacctggagatagtatcatatcccacagattgggggcttagtccccaagactactccacat-agacaccaatcaca-----------------------------------------ggagttcccaccacctgc--tttgggcttcactaatttgctggaataactcacagaattcagggaaacatttatgtttactagtttattataaaggatattacaaaggatacagatgaaaatacgtgtagggtgaggtatctgggaagcagcatggagcttccatgcccttcctggacacaccaccctcctaaaacctccagttgttcagctatctggaagctccctgaacccagttctcttgggtttttacagaagcttcatgacgccagcattccttctcccaaggtatactgtgggaccctctctagagagggtcttaagacccataaccagaaaggcagaagattagagtcctgccttggggcaggtgaaatgaggccagaagagagattctgattcctgaggactgctgaggcctaacacacccaacattattacaaaaga-tgtaacgagggaatataggagctaggaaccagtaactatggccaaaaaccaataaataacaccacaTACCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     212286 763 -    735854 AAGCCtattttaggaaaccctctctcaaatcacatttttcctctgctctcacaccaccacaacaatcatcaacacagaagacttctgtgaccaaaggtgtggaggtttttccctacactccaagcagtggaaatcagctgggtatcctccagttcaacctcaacactatctacctggagatagcatcatatcccacagattgggggcttagtccccaagactactccacatgagacaccaatcaca-----------------------------------------ggagttcccaccacctgc--tttgggcttcactaatttgctggagtaactcacagaattcagggaaatatttatgtttactagtttattataaaggatattacaaaggatacagatgaaaatacgtgtagggtgaggtatctgggaaggagcatggagcttccatgcccttcctggacacaccaccctcctaaaacctccacttgttcagctatctggaagctccctgaacccagttctcctgggtttttacagaagcttcatGACGCcagcattccttctcccaaggtatagtgtgggaccctctctggagagggtcttaagacccataatcagaaaggcagaagattagagtcctgccttggggcaggtgaaatgaggccagaagagagattctgattcctgaggactgctgaggcctaacacacccaacattattacaaaagactgtaccgagggaatataggagctaggaaccagtaactatggccaaaaaccaataaataacaccacaTACCCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     177810 760 -   1829203 AAGCCtattttaggaaaccctctctcaaaccacatttttcctctgctctcacaccaccacaacaatcatcaacacagaagacttctgtgaccaaaggtgtggaggtttttccccacactccaagcagtggaaatcaactgggtatcctccagttcaacgtcaacactatctacctggagatagcatcatatcccacagattgggggcttagtccccaagactactccacatcagacaccaatcaca-----------------------------------------ggagttcccacc-cctgc--tttgggcttcactaatttgctggagtaact--cagaattcagggattcttttacgtttactagtttattataaaggatattacaaaggatacagatgaaaatatgtgtagggtgaggtacctgggaaggagcatggagcttccatgaccttcctggacataccaccctcctaaaacctccacttgttcagctacctggaagctccctgaacccagttctcctgggtttttacagaagcttcatgatgccagcattccttctcccaaggtatagtgtgggaccctctctggagagggtctcaagacccataatcagaaaggcagaagattagagtcctgccttggggcaaatgaaatgaggccagaagagagattgtgattcctgaggcctgctgaggcctaacacacccaacattattacaaaagactgtaacaagggaatataggagctaggaaccagtaactatggccaaaaaccaataaataacaccacaTACCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30353766 803 + 171630274 TACCCtattttaggaaaccctctttcaaaccacgtttttcctctgctctcacaccaccacaacaatcaccaacacataagacttctgtgaccaaaggtgtggggttttttccccacacaccaagcaatgga---tagctgggtgtcttccagttcaatttcatcactatctacctggagatagcatcatatcccacagattggaggcttaatccccaagactgctccacatcagataccaattgcaagtcccagcctctagaacttctcatcaactggcttcgagttggaattcctaccaccccctctttgggcttcgctaatttgctggagtggctcacagaattcagggaaatatttaggtttatcagtttattataaaggatattacaaaggatacagatgaaaatacatgtagggtgaggtatcaggtaaggagcatggagcttccatgcccttcctgggcacgccactctccaaaaacctccacgtgttcagctatctggaagctccctgaacttatttctcctgggtttttttggaagcttcatGACGCcagcattccttctcccaaggtacagggtgggaccctctctggagagggtcttaagacctataagtagaagggcagaagattagagccctgccttgggacaggtgaaatgaaggcagaagagagattctgattcctgaggccagtcaagtcctaatacacccaacattataaccaaagactataagaatggaatataggagctaggagccaggaactatggccaaaaaccaatatataacaccacaTGTCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           177267 799 +    515838 TATGCtattttaggaaaccctctttcaaaccatgtttttcctctgctctcacaccacctcaacaatcatcaacacagaagacttctgtgaccaaaggtgtggggctttttccccacacatcaagcagtgaa---cagctgggtgtcttccagttcaatttcatcactatctacctggagatagcatcatatcccacagactggaggcttaatccccaaga---ctccacatcagataccaattgtgagtcccagcctctagaacttctgatcaactggctttgagttggagttcccaccaccccctctttgggcttcactaatttgctgaagtggctcaaggaattcagggaaatatttatgtttaccagtttattataaaggatattacaaaggatacagatgacaatacatgtagggtgaggtatcaggtaaggagcatggagcttccatgccctt-ctgggcacaccactctccaaaaacctccacgtgttcagctatctggaagctctctgaacctaattctcctgggtttttatggaagcttcatGACGCcagcattccttctcccaaggtacagggtgggaccctctctggagagggtcttaagacctataattagaagggcagaagattagagccctgccttggggcaggtgaaatgagggcagaagagagattctgattcctgaggccagccaaggcctaatacacccaacattataacaaaagactgtaagaagggaatataggagctaggagccaagaactgtggctaaaaaccaatatataacaccacaTGTCCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     811321 801 -   1771730 TACGCTATAttagggaaccctctttcaaaccacgtttttcctctgctctcacaccaccacaacaatcatcaacacagaagacttctgtgaccaaaggtgtcgggctttttccccacacaccaagcagtgga---cagctgggtgtcttccggttcaatttcatcactatctacctggagatagcatcatatcccacagactggaggcttaatccccaagactactccatatcagataccaattgcaggtcccagcctctagaacttctgatcaactggctttgagttggagttccgaccaccccctgtttgggcttcactaatttgctggagtggctcaaggaattcagggaaatatttatgtttaccagtttattataaaggatattacaaaggatacagatgaaaatacatgtagagtgaggtatcggata--gagcatggagcttccatgtccttcctgcacacacctctctccaaaaacctccacgtgttcagctatctggaagctccctgaacctaattctcctgggtttttatggaagcttcatGATGCcagcattccttctcctaaggtacagggtgggaccctctctggagagggtcttaagacctataattcgaaggacagaagattagagccctgcctcggggcaggtgaaatgagggcagaaaagagattctgattcctgaggccggccaaggcctaatacacccagcattataacaaaagactgtaagaggggaatataggagctaggagccaggaactgtggccaaaaaccaatatataacaccacaTGCCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     293347 803 -    383796 TACCCtattttaggaaatcctctttcaaaccacgtttttcctctgctctcacaccaccacaacaatcatcaacacagaagacttctgtgaccaaaggtgtggggctttttccccacacaccaagcaatgga---tagctggttgtcttccagttcaatttcatcactatctacctggagatagcatcatatcccacagattggaggcttaatccccaagactgctccacatcagataccaattgcaagtcccagcctctagaacgtctgatcaactggctttgagttggaattcccaccaccccctctttgggcttcactaatttgctggagtggctcacagaattcagggaaatatttaggtttgccagtttattataaaggatattacaaaggatacagatgaaaatacatgtagggtgagatatcaggtaaggagcatggagcttccttgcccttcctgggtacaccactctccaaaaacctccatgtgttcagctatctggaagctccctgaacctaattctcctgggtttttatggaagcttcatGACGCcagcattccttctcccaaggcacaaggtgggaccctctctggagagggtcttaagccttataattagaagggcagaagattagagcccagccttggggccggtgaaatgagggcagaagacagattctgattcctgaggccagccaaggcctaatacacccaatattataatgaaagactgtaagaagggaatataggagctaggagccaggaactgtggccaaaaaccaatatgtaacaccacaTGCCCC
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215199   9 +  18854210 I
e cerAty1.NW_012002535v1     384594 1297 -    863181 I

a score=344717.000000
s hg38.chr6_GL000254v2_alt  1390187 34 +   4827813 CACtgtcttagtccactcaggctgctataacaga
s panTro5.chr6             30263593 34 + 175400573 CACtgtcttagtccactcaggctgctataacaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30494108 34 + 173848474 CACtgtcttagtccactcaggctgctataacaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     200695 34 +   2037526 CACtgtcttagtccactcaggctgctataacaga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74873085 34 + 122973662 CACAgtcttattccactcaggctgctataacaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30744893 34 + 172585720 CACtgtcttagtccactcaggctgctataacaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30041407 34 - 170955103 CACtgtcttagtccactcaggctgctataacaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     290693 34 +   1495729 CACtgtcttagtccactcaggctgctataacaga
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29541162 34 -  71996105 CACtgtcttagtccactcacgctgctataacaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     213049 34 -    735854 CACtgtcttagtccactcaggctgctataacaga
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     178570 34 -   1829203 CACtgtcttagtccactcaagctgctataacaga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30354569 34 + 171630274 CACtgtcttagaccactcaggctgctataacaga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           178066 34 +    515838 CACtgtcttagtccactcaggctgctataacaga
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     812122 34 -   1771730 CACtgtcctagtccacccaggctgctataacaga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     294150 27 -    383796 CACTGT-------CACtcaggctgctataacaga
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           215208 34 +  18854210 CACtgtttaagtccattcaggctgctataacaga
i otoGar3.GL873550         I 9 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e cerAty1.NW_012002535v1     384594 1297 -    863181 I

a score=1767616.000000
s hg38.chr6_GL000254v2_alt  1390221 172 +   4827813 ataccttagactgggtggctta--taaacaacataaa---agtatttctcacagttatggaggctggtaagtccaagagc-aaggtgttggttaatttcatgtctgatgaaggcccctttcctgtttcataaacgtatatcttctccaagtggcctcacatggcagaaaggtgaagag
s panTro5.chr6             30263627 172 + 175400573 ataccttagactgggtggctta--taaacaacataaa---tgtatttctcacagttatggaggctggtaagtccaagagc-aaggtgttggttaatttcctgtctgatgaaggcccctttcctgtttcataaacgtatatcttctccaagtggcctcacatggcagaaaggtgaagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30494142 172 + 173848474 ataccttagactgggtggctta--taaacaacataaa---tgtatttctcacagttatggaggctggtaagtccaagagc-aaggtgttggttaatttcctgtctgatgaaggcccctttcctgtttcataaacgtatatcttctccaagtggcctcacatggcagaaaggtgaagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     200729 172 +   2037526 ataccttagactgggtggctta--taaacaacataaa---tgtatttctcacagttatggaggctggtaagtccaagagc-aaggtgtcggttaatttcatgtctgatgaaggcccctttcctgtttcataaacatatatcttctccaagtggcctcacatggcagaaaggtgaagag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74873119 172 + 122973662 ataccttagactgggtggctta--caaacaacataaa---tatatttctcacagttctggaggctggtaagtccaagagc-aaggtgttggttaatttcatgtctgatgaaggcccctttcctgttccatacacgtatatcttctccaaatggcctcacatggcagaaaggtgaggag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30744927 171 + 172585720 ataccttagactgggtggctta--taaacaacataaa---tgtatttctcacagttctggaggctggcaagtccaagagc-aaggtgttggttaatttcatgtctgatgatggctcctttcctgtttcataaacctgtgtcttctccaagtgaccccacatggcagaaa-gtgaagag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30041441 171 - 170955103 ataccttagactgggtggctta--taaacaacataaa---tgtatttctcacagttctggaggctggcaagtccaagagc-aaggtgttggttaatttcatgtctgatgatggctcctttcctgtttcataaacctgtgtcttctccaagtgacctcgcatggcagaaa-gtgaagag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     290727 171 +   1495729 ataccttagactgggtggctta--taaacaacataaa---tgtatttctcacagttctggaggctggcaagtccaagagc-aaggtgttggttaatttcatgtctgatgatggctcctttcctgtttcataaacctgtgtcttctccaagtgacctcgcatggcagaaa-gtgaagag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     385891 171 -    863181 ataccttagactgggtggcttatttaaac-acataaa---tgtctttctcaccgttctggaggctgg-aagtccaagagc-aaggtgttggttaatttcatgtctgatgatggctcctttcctgtttcataaacctgtgtcttctccaagtgacctcacatggcagaaa-gtgaaggg
i cerAty1.NW_012002535v1   I 1297 C 0
s chlSab2.chr17            29541196 171 -  71996105 ataccttagactgggtggctta--taaacaacataaa---tgtgtttctcacagttctggaggctggcaagttcaagagc-aaggtgttggttaatttcatgtctgatgatggctcttttcctgtttcataaacctgtgtcttctccaagtgacctcacatggcagaaa-gtgaagag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     213083 171 -    735854 ataccttagactgggtggctta--taaacaacataaa---tgtatttctcacagttctggaggctggcaagtccaagagc-aaggtgttggttaatttcatgtctgatgatggctcctttcctgtttgataaacctgtgtcttctccaagtgatctcgcatggcagaaa-gtgaagag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     178604 171 -   1829203 ataccttagactgggtggctta--taaacaacataaa---tgtatttctcacagttctggaggctggcaggtccaagagc-aaggtgttggttaatttcatgtctgatgatggctcctttcctgtttcataaacttgtgtcttctccaagtgacctcacatggcagaaa-gtgaagag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30354603 173 + 171630274 ataccttagactggttggctta--taaacaacataaa---tgtatttctcacagttctaaaggctggaaaggccaagagcgaagctgttggttaatttcatgtctgatgatggactctttcctgtttcataaacgggtgtcttctccaagtggcctcgcgtggcagaaaggtcaagag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           178100 173 +    515838 ataccttagactggttggctta--taaacaacataaa---tgtatttctcacacttctagaggctggaaaggctaagagcaaaggtgttggttaatttcatgtctgatgatggattctttcctgtttcataaatggatgtcctctccaagtggcctcacctggcagaaaggtcaagag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     812156 173 -   1771730 ataccttagactggttggctta--taaacaacataaa---tgtatttctcacagttctagaggctggaaaggccaagagcaaaggtgttggttaatttcatgtctgatgatggactctttcctgtttcataaacaggtgtcttctccaagtggcctcacctagcagaaaggtcaagag
i cebCap1.NW_016107755v1   C 0 I 1221
s aotNan1.NW_018496904v1     294177 173 -    383796 ataccttagactggttggctta--taaacaacataaa---tgtatttctcacagttctagaggctggaaaggccaagagcaaaggtgttggttaatttcagatctgatgatggactctatcctgtttcataaatgggtgtcttctccaagtggcttcacctggcagaaagatcaagag
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           215242 173 +  18854210 ataccatagcccgaatggctta--tgaacaacagaaagttttttttcctcatagttctagaggctgggaagtccaacatc-aaggttttggttgatttggtgtgtggtgctggcctaattcctgtttcatagattgctgttttcttaaagtggcctctcatggcagaagggctaag--
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I

a score=2427085.000000
s hg38.chr6_GL000254v2_alt  1390393 257 +   4827813 aactgcctggggtctttctgataaaggcagtgatcccattcatgggggctctgcattcataacctaatcacctccaaa------aggccccacctctaagtatcatcacactggggattaagttttaaacataggaatttgggtgggggattggagacacaaacattcagtctagagcaTCCATAAAAGTCTAAA-AAATTATCCTAGGTTTGTCACCATGCTACTCAAACTCTGATCTATGAATAGCTGAT-ATCaaaccattt
s panTro5.chr6             30263799 257 + 175400573 aactgcctggggtctttctgataaaggcagtgatcccattcatgggggctctgcattcataacctaatcacctccaaa------aggccccacctctaagtatcatcacactgggaattaagttttaaacataggaatttgggtgggggattggagacacaaacattcagtctagagcaTCCATAAAAGTCTAAA-AAATTATCCAAAGTTTGTCACCATGCTACTCAAACTCTGATCTATGAATAGCTGAT-ATCaaaccattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30494314 257 + 173848474 aactgcctggggtctttctgataaaggcagtgatcccattcatgggggctctgcattcataacctaatcacctccaaa------aggccccacctctaagtatcatcacactggggattaagttttaaacataggaatttgggtgggggattggagacacaaacattcagtctagagcaTCCATAAAAGTCTAAA-AAATTATCCTAGGTTTGTCACCATGCTACTCAAACTCTGATCTATGAATAGCTGAT-ATCaaaccattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     200901 257 +   2037526 aactgcctggggtctttctgataaaggcagtgatcccattcataggggctctgcattcataacctaatcacctccaaa------aggccccacctctaagtatcatcacactggggattaagttttaaacataggaatttgggtgggggattggagacacaaacattcagtctagagcaTCCATAAAAGTCTAAA-AAATTATCCTAGGTTTGTCACCATGCTACTCAAACTCTGATCTATGAATAGCTGAT-ATCaaaccattt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74873291 257 + 122973662 aactacctggggtctttttgataaaggcagtgatcccattcatgggggccctgcattcataacctaatcaccaccaaa------aggccccacctctaagtatcttcacattggggattaagttttaaacataggaatttgggtgggggattggagacacaaacattcagtctagagcaTCCATAAAAGTCTAAA-AATTTATCCTAGGTTTGTCACCATGCTACTCAAACTCTGATCTATGAATAGCTGAT-ATCaaaccattt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30745098 257 + 172585720 aactgcctggggtctttttgataagggcagtgatcccattcacgggagctctgcattcataacctaatcacctccaag------aggccccacctgtaaatatcatcacactggggattaag-ttttaacataggaatttgggtgggggattgaggacacaaacattcagtccagagcaTCCATAAAAGTCTAAAAAAATTATCCTAGGCTTGTCACCATGCTACTCAAACTCTAATCTATGAATAACTGAT-attaaaccattt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30041612 257 - 170955103 aactgcctggggtctttttgataagggcagtgatcccattcacgggagctctgcattcataacctaatcacctccaaa------aggccccacctctaaatatcatcacactggggattaag-tttaaacataggaatttgggtgggggattgaggacacaaacattcagtccagagcaTCCATAAAAGTCTAAAAAAATTATCCTAGGCTTGTCACCATGCTACTCAAACTCTAATCTATGAATAACTGAT-attaaaccattt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     290898 257 +   1495729 aactgcctggggtctttttgataagggcagtgatcccattcacgggagctctgcattcataacctaatcacctccaaa------aggccccacctctaaatatcatcacactggggattaag-tttaaacataggaatttgggtgggggattgaggacacaaacattcagtccagagcaTCCATAAAAGTCTAAAAAAATTATCCTAGGCTTGTCACCATGCTACTCAAACTCTAATCTATGAATAACTGAT-attaaaccattt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     386062 263 -    863181 aactgcctggggtctttttgataagggcagtgatcccattcacgggagctctgcattcataacctaatcacctccaaatcacctaatcaccacctctaaatatcatcacactggggattaag-tttaaacataggaatttgtgtgggggattgaggacacaaacattcagtccagagcaTCCATAAAAGTCTAAAAAAATTATCCTAGGCTTGTCACCATGCTACTCAAACTCTAATCTATGAATAACTGAT-attaaaccattt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29541367 257 -  71996105 aactgcctggggtctttttgataagggcagtgatcccattcacgggagctctgcattcataacctaatcacctccaaa------aggccccacctctaaatattatcacactggggattagg-tttaaacataggaatttgggtgggggattgaggacacaaacattcagtccagagcaTCCATAAAAGTCTAAAAAAATTATCCTAGGCTTGTCACCATGCTACTCAAACTCTAATCTATGAATAACTGAT-attaaaccattt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     213254 263 -    735854 aactgcctggggtctttttgataagggcagtgatcccattcacgggagctctgcattcataacctaatcacctccaaatcacctaatcaccacctctaaatatcatcacactggggattaag-tttaaacataggaatttgggtgggggattgaggacacaaacattcagtccagagcaTCCATAAAAGTCTAAAAAAATTATCCTAGGCTTGTCACCATGCTACTCAAACTCTAATCTATGAATAACTGAT-attaaaccattt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     178775 257 -   1829203 aactgcctggggtctttttgataagggcagtgatcccattcacgggagctctgcattcataacctaatcacctccaaa------aggccccacctctaaataatatcacactggggattaag-tttaaacataggaatttgggtgggggattgaggacagaaacattcagtccagagcaTCCATAAAAGTCTAAATAAATTATCCTAGGCTTGTCACCATGCTACTCAAACTCTAATCTATGAATAACTGAT-attaaaccattt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30354776 257 + 171630274 aactgtctgaggtctttttgataaaggtagtaatcccattcacaggagctctgcatttataacctaatcacctcccaa------aggccccacctctaaatatcatcacattggggattaac-tttaaatgtatgaatttgggtggagggttggggacacaaacattccatctagagcaTCCATAAAAGTCTAAAAAAATTATCCTAGGTTTGTCATCATGCTACTCAAACTCTGGTCTATGAATACGTGAT-AGCaaaccattt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           178273 257 +    515838 aactgtctggggtctttttgataaaggtagtaatcccatttatgagagctctgcattcataacctaatcacctcccaa------aggccccacctctaaatatcatcacactggggattaat-tttaaatgtatgaatttgggtggagggttggggacacaaacattcCATCTAGAGTATCCATAAAAGTCTAAAAAAATTATCCTAGATTTGTCACCATGCTACTCAAACTCTGGTCTATGAATACAtgat-atcaaagcattt
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     294350 257 -    383796 agctgtctggggtctttttgataaaggtagtaatcccattcatgggagctctgcattcataacctaatcacctcctaa------aggccccacctctaaatatcatcacattggggattaac-tttaaatgtatgaattttggtggagggttagggacacaaacaatccatctagagcaTCCATAAAAGTTTAAAAAAATTATCCTAGGTTTGTCACCATGCTACTCAAACTCTGGTCTATGAATATGTGAT-ATCaaaccattt
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           215415 244 +  18854210 ----------ggtctttctcgtatgggtagtaattccattcacaggggttccacactcatgacctgatcacctcctaa------aggccccacctctaaatactatcacagtggagattaat-tttaaacat--gaatttgagaagaggcaggagtgcataaacattcagtctatagcaCCCACAAAAGTAAAAAAAAA--ATCCTAGTTTTGTCACCATGTTACTCAAAGTCTGGTGTATGAATAGCTGATAATCAAACTGTTT
i otoGar3.GL873550         C 0 I 12540
e mm10.chr17               58018469 2227 -  94987271 I
e cebCap1.NW_016107755v1     812329 1221 -   1771730 I

a score=648327.000000
s hg38.chr6_GL000254v2_alt  1390650 89 +   4827813 cttcacaaactctcccaaaaagg-----agaaaggaacactgcccaacatattctataaggtatgttctataaggctggtaccaaaagcagac-a
s panTro5.chr6             30264056 89 + 175400573 cttcacaaactctcccaaaaagg-----agaaaggaacaccgcccaacatattctataaggtatgttctataaggctggtaccaaaagcagac-a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30494571 89 + 173848474 cttcacaaactctcccaaaaagg-----agaaaggaacactgcccaacatattctataaggtatgttctataaggctggtaccaaaagcagac-a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     201158 89 +   2037526 cttcacaaactctcccaaaaagg-----agaaaggaacactgcccaacatattctataaggtatgttctataaggctggtaccaaaagcagac-a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74873548 90 + 122973662 cttcacaaactctcccaaaaagg-----agaaaggaacactgcccgacatattctataaggtatgttctataaggctggtaccaaaagcacacaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30745355 82 + 172585720 ctccacaaactcttccaa------------aaaggaacactgcccaacatattctataacgaatgttctataaggctggtaccaaaaccagac-a
i rheMac8.chr4             C 0 I 2132
s macFas5.chr4             30041869 82 - 170955103 cttcacaagctcttccaa------------aaaggaacactgcccaacatattctataacgaatattctataaggctggtaccaaaaccagac-a
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     291155 82 +   1495729 cttcacaagctcttccaa------------aaaggaacactgcccaacatattctataacgaatattctataaggctggtaccaaaaccagac-a
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     386325 82 -    863181 cttcacaaactcttccaa------------aaaggaacactgcccaacatattctataacgaatgttctataaggctggtaccaaaaccagac-a
i cerAty1.NW_012002535v1   C 0 I 2
s chlSab2.chr17            29541624 83 -  71996105 cttcacaaactcttccaa------------aaaggaacactgcccaacatattctataacgaatgttctataaggctggtaccaaaaccagacaa
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1     213517 82 -    735854 cttcacaaactcttccaa------------aaaggaacactgcccaacatattctataacgcatgttctataaggctggtaccaaaaccagac-a
i manLeu1.NW_012107142v1   C 0 I 1
s colAng1.NW_012115577v1     179032 82 -   1829203 cttcacaaactcttccaa------------aaaggaacactgcccaacatattctataacgaatgttctataaggctggtaccaaaaccagac-a
i colAng1.NW_012115577v1   C 0 I 5
s calJac3.chr4             30355033 94 + 171630274 tttcacaaactcttctaaaaaggaaaaaaaaaaggaacactacgcaacatattgtatgaggaatgttctaaaagactggtaccaaaaccagac-a
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           178530 92 +    515838 cttcacaaactcttccaaaaagg--aaaaaaaaggaacactacccaacatatgctatagggaatgttctaaaagactggtaccaaaacagtca-a
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     294607 91 -    383796 cttcacaaactcttccaaaatgg---aaaaaaaggaacactacccaacatattctataaggaatgttctaaaagactagtaccaaaaccagac-a
i aotNan1.NW_018496904v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215659 12540 +  18854210 I
e cebCap1.NW_016107755v1     812329 1221 -   1771730 I

a score=2761243.000000
s hg38.chr6_GL000254v2_alt  1390739 402 +   4827813 aaacaatcac-aaaaaaactacagatcgctattcatgaatatagatgtg-aaaatcttcaagaaaatactagcaaacaacccagcaatgtacaaaaataattatacaccatgacaaagtgagatttatcctaggaatgcaagatgggtttaatatcc-aaaaatcaattaatgtaatatattatatcaatagaataaaaa--cccacaattatctcaatagatgcag-aaaaaggttttgatcaaattcgatactctttcataatagaaacagtcaacaggtgggcacattggcatgtgtctatagtcccagctactcaaggagactgaggaaagagaatcacttgaggccagaagttcgagggcatcttgggcgatgtgttgagaccatgttact-----------------tt-------------aaaa---------------------------aaaaa----------------a
s panTro5.chr6             30264145 405 + 175400573 aaacaatcac-aaaaaaactacagatcgctattcatgaatatagatgtg-aaaatcttcaagaaaatactagcaaacaacccagcaatgtacaaaaataattatacaccatgacaaagtgagatttatcctaggaatgcaagatgggtttaatatcc-aaaaatcaatgaatgtaatatattatatcaatagaataaaaa--cctacaattatctcaatagatgcag-aaaaaggttttgaccaaatttgatactctttcataatagaaacagtcaacaggtgggcacattggcatgtgtctatagtcccagctactcaaggagactgaggaaagagaatcacttgaggccagaagttcgagggcatcttgggcgatgtgttgagaccatgttact-----------------tt----------aaaaaaa---------------------------aaaaa----------------a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30494660 402 + 173848474 aaacaatcac-aaaaaaactacagatcgctattcatgaatatagatgtg-aaaatcttcaagaaaatactagcaaacaacccagcaatgtacaaaaataattatacaccatgacaaagtgagatttatcctaggaatgcaagatgggtttaatatcc-aaaaatcaatgaatgtaatatattatatcaatagaataaaaa--cctacaattatctcaatagatgcag-aaaaaggttttgaccaaatttgatactctttcataatagaaacagtcaacaggtgggcacattggcatgtgtctatagtcccagctactcaaggagactgaggaaagagaatcacttgaggccagaagttcgagggcatcttgggcgatgtgttgagaccatgttact-----------------tt-------------taaa---------------------------aaaaa----------------a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     201247 415 +   2037526 aaacaatcac-aaaaaaactacagatcgctattcatgaatatagatgtg-aaaatcttcaagaaaatactagcgaacaacccagcaacgtacaaaaataattatacaccatgacaaagtgagatttatcctaggaatgcaagatgggtttaatatcc-aaaaatcaattaatgtaatatattatatcaaaagaataaaaa--cccacaattatctcaatagatgcag-aaaaaggttttgaccaaatttgatactctttcataatagaaacagtcaacaggtgggcacattggcatgtgtctatagtcccagctactcaaggagactgaggaaagagaatcacttgaggccagaagttcgagggcatcttgggcgatgtgttgagaccacgttact-----------------ttaaaaaaaaaaaaaaaaa---------------------------aaaaa----------------a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74873638 407 + 122973662 aaaaaatcac-aaaaaaactacagatcgctattcatgaatatagatgtg-aaaatcttcaagaaaatactagcaaaccacccagcaacatacaaaaataattatacaccataacaaagtgagatttatcctaggaatgcaagatgggtttaacatcc-aaaaatcaattaatgtaatatattatatcaatagaataaaaa--cccacaattatctcaatagatgaag-aaaaaggttttgatcaaatttgatactctttcataatagaaacagtcaacaggtgggcacattgacatgtgtctatagctccagctactcaaggaggctgaggcaagagaatcgcttgaggccagaagtttgagggcatcttgggcgatgtgttgagaccatgttact-----------------ta--------aaaaaaaaa---------------------------aaaaa----------------a
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30041952 434 - 170955103 aaaaaatcacaaaaaaaactacagatcactattcatgaatatagatgtgaaaaatcttcaagaaaatactagcaaacaacccagcagcttacaaaaataattatacaccatgacaaagtgacatttactctaggaatgcaaggtgagtttaacatccaaaaaatcaattaatgcaatatataatatcaacagaataaaaaaccccatgattatctcaatagatgcagaaaaaaggttttgaccaaatttgatactttttcataatagaaacagtcaacaggtgggtacagtggcatgtgtctatagtcccagctactcaaggaagctgaggcaagagaatcgcttgaggccagaagttcaagggcatcttgggcaatgtgttgagaccatgttact-----------------aaaaaaaagaaaaaaaaaa---------------------------aaaaa---aaagaaagaaagaa
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     291238 451 +   1495729 aaaaaatcacaaaaaaaactacagatcactattcatgaatatagatgtgaaaaatcttcaagaaaatactagcaaacaatccagcagcttacaaaaataattatacaccatgacaaagtgacatttactctaggaatgcaaggtgagtttaacatccaaaaaatcaattaatgcaatatataatatcaacagaataaaaaaccccatgattatctcaatagatgcagaaaaaaggttttgaccaaatttgatactttttcataatagaaacagtcaacaggtgggtacagtggcatgtgtctatagtcccagctactcaaggaagctgaggcaagagaatcgcttgaggccagaagttcaagggcatcttgggcaatgtgttgagaccacgttactaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa---------------------------aaaaa---aaagaaagaaagaa
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     386409 419 -    863181 aaaaaatcac-aaaaagactacagatcactattcatgaatatagatgtgaaaaatcttaaagaaaatactagcaaacaacccagcagcttacaaaaataattatacaccatgacaaagtgacatttactctaggaatgcaaggtgggtttaacatccaaaaaatcaattaatgcaatatataatatcaatagaataaaaaaaaccattattatctcaatagatgcagaaaaaaggttttgaccaaatttgatactctttcataatagaaacagtcaacaggtgggtacagtggcatgtgtctatagtcccagctactcaaggaagctgaggcaagagaatcgcttgaggccagaagttcaagggcatcttgggcaatgtgttgagaccatgttact-----------------aaaaaaaagaaaaaaagaa---------------------------aaa-----------------aa
i cerAty1.NW_012002535v1   I 2 C 0
s chlSab2.chr17            29541708 436 -  71996105 aaaaaatcac-aaaaagactacagatcactattcatgaatatagatgtgaaaaatcttacagaaaatactagcaaacaacccagcagcttacaaaaataattatacaccatgacaaagtgacatttactctaggaatgcaaggtgggtttaacatccaaaaaatcaattaatgcaatatataatatcaatagaataaaaaaccccatgattatctcaatagatgcagaaaaaaggttttgaccaaatttgatactctttcataatagaaacagtcaacaGGTgggtacagtggcatgtgtctatagtcccagctactcaaggaagctgaggcaagagaatcgcttgaggccagaagttcAAGGGCATCCTGGGCAATGTGTTGAGACCATGTTACT-----------------aaaaaaaaaaaaaaaaaaa---------------------------aaagaaataaagaaagaaaaaa
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1     213600 447 -    735854 aaaaaatcac-aaaaaaactacagatcactattcatgaatatagatgtgaaaaatcttcaagaaaatactagcaaacaacccagcagtttacaaaaataattatacaccatgacaaagtgacatttactctaggaatgcaaggtgggtttaacatccaaaaaatcaattaatgcaatatataatatcaatagaataaaaaaccccatgattatctcaatagatgcagaaaaaaggttttgaccaaatttgatactctttcataatagaagcagtcaacaGGTgggtacagtggcatgtgtctatagtcccagctactcaaggaagctgaggcaagagaatcgcttgaggccagaagttcAAGGGCATCTTCGGCAATGTGTTGAGACCATATTACT-----------------aaaaaaaaaaaaaaaaaaaaaaaa----------------agaaataaagaaagaaagaaagaaaaaa
i manLeu1.NW_012107142v1   I 1 C 0
s colAng1.NW_012115577v1     179119 463 -   1829203 aaaaaatcac-aaaaaaactacagatcactattcatgaatatagatgtgaaaaatcttcaagaaaatagtagcaaacaacccagcagcttacaaaaataattacataccatgacaaagtgacatttactctaggaatgcaaggtgggtttaacatccaaaaaatcaactaatgcaatatataatatcaatagaataaaaaaccccatgattatctcaatagatgcagaaaaaaggttttgaccaaatttgatactctttcttaatagaaacagtcaacaggtgggtacagtggcatgtgtctatagtcccagctactcaaggaagctgaggcaagagaatcgcttgaggccagaagttcaaggacatcttgggcaatgtgttgagaccatgttaca-----------------aaaaaaaaagaaagaaagaaagaaagagagagagagagagagagagaaagaaagaaagaaagaaagaa
i colAng1.NW_012115577v1   I 5 C 0
s calJac3.chr4             30355127 392 + 171630274 aaaaaatcac-aagaaaactacagatcactattcataaatacagatgtg-aaaatcttcaagaaaatactagcaaacaacccagcaacatacaaagataattatacaccatgacaaagtgagatttatcctaggaatgcaagatgggtttaacatgc-aaaaatcaattaat----------acatcaacagaattaaaaa-cccatgattacctcaacagatgcag-aaaaaggttttgacaaaatgtgatactctttcataatagaaacagtcaagaaGTgggcacagtggcatgcttttacagtctgagatgctcaaagaggctgaggcaagagaatcacttgaagcca-aaatttgaggccatcttgggcaatgtgttgagatcatgttact-----------------ta----------aaaaaaa---------------------------aaa-------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           178622 393 +    515838 aaaaaatcac-aagaaaactacagatcactattcatgaatacagatgtg-aaaatcttcaagaaaatactagcaaacaacccagcaacatacaaagataattatacaccatgacaaaatgagatttatcctaggaatgcaagatgggtttaacatgc-aaaaatcaattaat----------atatcaacagaattaaaaa-cccacgattacctcaatagatgcagaaaaaaggttttgacaaaatgtgatactctttcataatagaaacagtcaagaggtggacacagtggcatgtgtttgtagtcctagatgctcaaggaggctgaggcaagagaatcacttgaagcca-aaatttgaggccatcttgggcaatgtgttgagatcatgttact-----------------tt----------aaaaaaa---------------------------aaa-------------------
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     294698 387 -    383796 aaaaaatcac-aagaaaactacagatca-----catgaatacagatgtg-aaaatcttcaagaaaatactagccaacaacccagcaacatacaaagataattacacaacatgacaaagtgagatttatcctaggaatgcaagatgggtttaacatgc-aaaaatcaattaat----------atatcaacagaattaaaaa-cccacaattatctcaatagatgcag-aaaaaggttttgacaaaatgtgatactctttcataatagaaacagtcaaGAGGTgggcacagtggcatgtgtttatagtcctagatgctcaaggaggctgaggcaagagaatcacttgaagtca-aaatttgaggccgttttgggcaatgtgttgagatcatgttact-----------------ta----------aaaaaaa---------------------------aaa-------------------
i aotNan1.NW_018496904v1   C 0 I 3938
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215659 12540 +  18854210 I
e cebCap1.NW_016107755v1     812329 1221 -   1771730 I
e rheMac8.chr4             30745437 2132 + 172585720 I

a score=57043.000000
s hg38.chr6_GL000254v2_alt  1391141 11 +   4827813 --g-------aGtcaacaaa
s panTro5.chr6             30264550 11 + 175400573 --a-------aGtcaacaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30495062 11 + 173848474 --a-------aGtcaacaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     201662 11 +   2037526 --g-------agtcaacaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74874045 11 + 122973662 --a-------agtcaacaaa
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30042386 11 - 170955103 --a-------agtcaacaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     291689 11 +   1495729 --a-------agtcaacaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     386828 11 -    863181 --a-------agtcaacaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29542144 11 -  71996105 --a-------aGtcaacaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     214047 11 -    735854 --a-------aGtcaacaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     179582 18 -   1829203 --aaagaaagagtcaacaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30355519 13 + 171630274 aaa-------aGtcaacaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           179015 10 +    515838 aaa----------taataaa
i saiBol1.JH378341         C 0 I 1980
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215659 12540 +  18854210 I
e aotNan1.NW_018496904v1     295085 3938 -    383796 I
e cebCap1.NW_016107755v1     812329 1221 -   1771730 I
e rheMac8.chr4             30745437 2132 + 172585720 I

a score=1844363.000000
s hg38.chr6_GL000254v2_alt  1391152 324 +   4827813 ctgggaattgaaaggaactttctcagccggataaagggcatctataaaaaagctacagctaacatcatactcgtattagtccatttatgcattgctttaaagaaatacatgaaactggataattta-taaagaaaagaggtttaattggctaaaggttctgcaggctatacaggtttctgctcctggggaggcctcaggaaacacaataatggtggaaggtgaatgggaagttagtacatcttacatggctgaagcaggaagaagagagaagggggaggtggcacacatgtttaaaaagccaaatctcactacaaaatctcaacg
s panTro5.chr6             30264561 324 + 175400573 ctgggaattgaaaggaactttctcagctggataaagggcatctataaaaaagctacagctaacatcatactcgtattagtccatttatgcattgctttaaagaaatacatgaaactggataattta-taaagaaaagaggtttaattggctaaaggttctgcaggctatacaggtttctgctcctggggaggcctcaggaaacacaataatggtggaaggtgaacgggaagctagtacatcttacatggctgaagcaggaagaagagagaagggggaggtggcacacatgtttaaaaagccaaatctcactacaaaatctcaatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30495073 324 + 173848474 ctgggaattgaaaggaactttctcagctggataaagggcatctataaaaaagctacagctaacatcatacttgtattagtccatttatgcattgctttaaagaaatacatgaaactggataattta-taaagaaaagaggtttaattggctaaaggttctgcaggctatacaggtttctgctcctggggaggcctcaggaaacacaataatggtggcaggtgaacgggaagctagtacatcttacatggctgaagcaggaagaagagagaagggggaggtggcacacatgtttaaaaagccaaatctcactacaaaatctcaatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     201673 324 +   2037526 ctgggaactgaaaggaactttctcagccagataaagggcatctataaaaaagctacagctaacatcatactcgtattagtccatttatgcattgctttaaagaaatacatgaaactggataattta-taaagaaaagaggtttaattggctaaaggttctgcaggctatacaggtttctgctcctggggaggcctcaggaaacacaataatggtggaaggtgaacgggaagctagtacatcttacatggctgaagcaggaagaagagagaagggggaggtggcacacatgtttaaaaagccaaatctcactacaaaatctcaatg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74874056 324 + 122973662 ctggggattgaaaggaactttctcagctggataaagggcatctataaaaaagctacagctaacatcatacttgtattagtccatttatgcattgctttagagaaatacatgaaactggataattta-taaagaaaagaggtttaattggctcaaggttctgcaggctatacaggtttctgctcctggggaggcctcaggaaacacaataatggtggaaggtaaaggggaagctagtacatcttacgtggctgaagcaggaagaagagagaagggggaggtggcacacacgtttaaaacaccaaatctcactacaaaatctcaatg
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30042397 324 - 170955103 ctgggaattgaaaggaactttctcagctggataaagggcatctataaaaaacctacagctaacatcatacttgtattagtccatttatgcattgctataaagaaatacatgaaactggataattta-taaagaaaagaggtttaattggctcaaggttctgcaggctatacaggtttctgcttctggggaggcctcaggaaacacaatcatggtggaaggtgaagaggaagctagtacatcttacatggctggagcagaaagaagcgagaagggggaggtggcacacacgtttaaaaaacgaaatctcactacgaaatctcaatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     291700 324 +   1495729 ctgggaattgaaaggaactttctcagctggataaagggcatctataaaaaacctacagctaacatcatacttgtattagtccatttatgcattgctataaagaaatacatgaaactggataattta-taaagaaaagaggtttaattggctcaaggttctgcaggctatacaggtttctgcttctggggaggcctcaggaaacacaatcatggtggaaggtgaagaggaagctagtacatcttacatggctggagcagaaagaagtgagaagggggaggtggcacacacgtttaaaaaacgaaatctcactacgaaatctcaatg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     386839 324 -    863181 ctgggaattgaaaggaactttctcagctggataaagggcatctataaaaaacctacagctaacatcatacttgtattagtccatttatgcattgctataaagaaatacatgaaactggataattta-taaagaaaagaggtttaattggctcaaggttctgcaggctatacaggtttctgcttctggggaggcctcaggaaacacaatcatggtggaaggtgaagaggaagctagtacatcttacatggctggagcaggaagaagcgagaagggggaggtggcacacacgtttaaaaaaccaaatcttactacgaaatctcaatg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29542155 320 -  71996105 ctgggaattgaaa-gaactttctcagctggataaagggcatctataaaaaacctacagctaacatcatacttgtactagtccatttatgcattgctataaagaaatacatgaaactggataattta-taaagaaaagaggtttaactggctcaaggttctgcaggctatacaggtttctgcttctggggaggcctcaggaaacacaatattggtggaaggtgaagaggaagc---tacatcttacatggctggagcaggaagaagcgagaagggggaggtggcacacacgtttaaaaaaccaaatctcactacgaaatctcaatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     214058 323 -    735854 ctgggaattgaaa-gaactttctcagctggataaagggcatctataaaaaacctacagctaacatcatacttgtattagtccatttatgcattgctataaagaaatacatgaaactggataattta-tgaagaaaagaggtttaattggctcaaggttctgcaggttatacaggtttctgcttctggggaggcctcaggaaacacaatcatggtggaaggtgaaggggaagctagtacatcttacatggctggagcaggaagaagtgagaagggggaggtggcacacacgtttaaaaaaccaaatctcactacgaaatctcaatg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     179600 324 -   1829203 ctgggaattgaaaggaactttttcagctggataaagggcatctataaaaaacctacagctaacatcatacctgtattagtccatttatgcattgctataaagaaatacatgaaactggataattta-taaagaaaagaggtttaattggctcaaggttctgcaggctatacaggtttctgcttctggggaggcctcaggaaacacaattatggtggaaagtgaaggggaagctagtacatcttacatggctggagcaggaagaagcgagaagagggaggtggcacacacgtttagaaaaccaaatctcactacgaaatctcaatg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30355532 325 + 171630274 ctgggaatagaaaggaactttctcagccagataaagggcatttatgaaaaacccacagctaacatcatacttgtattactccatttatgcattgctataacgaaatacatgaaactgggtaatttattaaaaaaaaaacatttaattggcttaaggttctgcaggctatacaggcttctgcttctggggaggcctcgggaaacacaatcatggtggaaggtgaaggggaagctagtacatcttacatggctggagctggaaaaggagagaagagggaggtggcacacacatttaaacaaccaaatctcacaatgaaatctcaatg
i calJac3.chr4             C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           179025 1980 +    515838 I
e otoGar3.GL873550           215659 12540 +  18854210 I
e aotNan1.NW_018496904v1     295085 3938 -    383796 I
e cebCap1.NW_016107755v1     812329 1221 -   1771730 I
e rheMac8.chr4             30745437 2132 + 172585720 I

a score=3418478.000000
s hg38.chr6_GL000254v2_alt  1391476 528 +   4827813 aaaattcactatcatgagaacagcaagggggaagtcca-cccccatgacccaatcacctcccaccacacccttcctccaacactggggactacagtttgacataagatttgggcgggtacacaaatccaaaccacatcaatatttaatggtgaaagactggttgctttcctcctaagatcagcaattaaaacaagaatatccactcccactatgtctattcaacattaccaaaggttctagctaagataattagacaagaaaaaagcaataaagtatattcagattggaaagaaagaagtaaaactatattcacagatgacatgatcttttatat-aaaaaaatgctaaatgatccattaaagagctattagaactactaacttcagcaaggataaaggatata----------acaccagtatacaaaaatcaattttatttctaaacccttgcaatgacaaatccagaaatgaaattaag-aaaacaattccatttgtaatagctttaaaggaacaaaatacttagaagcaaatttaac
s panTro5.chr6             30264885 524 + 175400573 aaaattcactatcatgagaacagcaagggggaagtcca-cccccatgacccaatcacctcccaccacacccttcctccaacactggggactacaatttgacataagatttgggcgggtacacaaatccaaaccacatcaatatttaatggtgaaagactggttgttttcctcctaagatcagcaattaaaacaagaatatccactcccactatgtctattcaacattaccgaaggttctagctaagataattagacaagaaaaaagcaataaagtatattcagattggaaagaaagaagtaaaactatattcacagatgacatgatcttttatat-aaaaaaatgcta----atccattaaagagctattagaactactaacttcagcaaggataaaggatata----------acaccagtatacaaaaatcaattgtatttctaaacccttgcaatgacaaatccagaaatgaaattaag-aaaacaattccatttgtaatagctttaaaggaacaaaatacttagaagcaaatttaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30495397 528 + 173848474 aaaattcactatcatgagaacagcaagggggaagtcca-cccacatgacccaatcacctcccaccacacccttcctccaacactggggactacaatttgacataagatttgggcgggtacacaaatccaaaccacatcaatatttaatggtgaaagactggttgttttcctcctaagatcagcaattaaaacaagaatatccactcccactatgtctattcaacattaccgaaggttctagctaagataattagacaagaaaaaagcaataaagtatattcagattggaaagaaagaagtaaaactatattcacagatgacatgatcttttatat-aaaaaaatgctaaataatccattaaagagctattagaactactaacttcagcaaggataaaggatata----------acaccagtatacaaaaatcaattgtatttctaaacccttgcaatgacaaatccagaaatgaaattaag-aaaacaattccatttgtaatagctttaaaggaacaaaatacttagaagcaaatttaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     201997 529 +   2037526 aaaattcactatcatgagaacagcaagggggaagtcca-tccccatgacccaatcacctcccaccacacccttcctccaacactggggactacaatttgacataagatttgggcgggtacacaaatccaaaccacatcaatatttaatggtgaaagactggttgctttcctcctaagatcagcaattaaaacaagaatatccactcccactatgtctattcaacattaccgaaggttctagctaagataattagacaagaaaaaagcaataaagtatattcagattggaaagaaagaagtaaaactatattcacagatgacacgatcttttatat-aaaaaaatgctaaataatccattaaagagctattagaactactaacttcagcaaggataaaggatata----------acaccagtatacaaaaatcaattgtatttctaaacccttgcaatgacaaatccagaaatgaaattaagaaaaacaattccatttgtaatagctttaaaggaacaaaatacttagaagcaaatttaac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74874380 527 + 122973662 aaaattcactatcatgagaacagcaagggggaagtcca-cccccatgacccaatcacctcccaccacacccttcctccaacactggggactacaatttgacatcagatttgggcaggtacacaaatccaaaccatatcaatatttaatggtgaaagaccggttgctttcctcctaagatcagcaattaaaacaagaatatccactcccactatgtctattcaacattactgaaggttctggctaagataattagacaagaaaaaagcaataaagtatattcagattggaaagaaagaagtaaaactatattcacagatgacatgatcttttatat--aaaaaatgctaaataatccactaaagagctattagaactactaacttcagcaaagataaaggatata----------acaccagtatacaaaaatcaattgtatttctaaacccttgcaatgacaaatccagaaatgaaattaag-aaaacaattccatttgtaatagctttaaaggaacaaaatacttacaagcaaatttaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30747569 525 + 172585720 aaaactcaccatcatgagaacagcaagggggaagtcca-cccccatgacccaatcacctcgcaccacacccttcctccaacactggggattacaatttgacatgagatttgggcgggtacacaaatccaaaccatatcaatatttaatggtgaaagactggttgctttcctcctaagatcagcag-taaaacaagaatatccactcccaccatgtctattcaacattactgaaggttatagctaagataattagacaag-aaaaagcaataaagtatatttagatcagaaagaaagaagtaaaactatattcacagatgacacgatcttttatat--aaaaaatcctaaagaatccactaaagagttattagaactactaagtttagcaaggataaagaatata----------acaccagtatacaaaaataaattatatttctaaatccttgcaataacaaatccagaaatgaaattaag-aaaacaattccatttgtaatagctttaaaggaacaaaatacttagaagcaaatttaac
i rheMac8.chr4             I 2132 C 0
s macFas5.chr4             30042721 523 - 170955103 aaaactcactatcatgagaacagcaagggggaagtcca-cccccatgacccaatcacctcacaccacacccttcctccaacactggggattacaatttaacatgagatttgggcgggtatacaaatccaaaccatatcaatatttaatggtgaaagactggttgctttcctcctaagatcagcag-taaaacaagaatatccactcccaccatgtctattcaacattactgaaggttatagctaagataattagacaag-aaaaagcaataaagtatatttagatcggaaagaaagaagtaaaactatattcacagctgacatgatcttttatat---aaaaatcctaaagaatccactgaagagttattagaactactaag-tcagcaaggataaaggatata----------acaccagtatacaaaaataaattatatttctaaatccttgcaatgacaaatccagaaatgaaattaag-aaaacaattccatttgtaatagctttaaaggaacaaaatacttagaagcaaatttaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     292024 524 +   1495729 aaaactcactatcatgagaacagcaagggggaagtccaccccccatgacccaatcacctcacaccacacccttcctccaacactggggattacaatttgacatgagatttgggcgggtatagaaatccaaaccatatcaatatttaatggtgaaagactggttgctttcctcctaagatcagcag-taaaacaagaatatccactcccaccatgtctattcaacattactgaaggttatagctaagataattagacaag-aaaaagcaataaagtatatttagatcggaaagaaagaagtaaaactatattcacagatgacatgatcttttatat---aaaaatcctaaagaatccactgaagagttattagaactactaag-tcagcaaggataaaggatata----------acaccagtatacaaaaataaattatatttctaaatccttgcaatgacaaatccagaaatgaaattaag-aaaacaattccatttgtaatagctttaaaggaacaaaatacttagaagcaaatttaac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     387163 524 -    863181 aaaactcactatcatgagaacagcaagggggaagtcca-cccccatgacccaatcacctcgcaccacacccttcctccaacac-ggggattacaatttgacatgagatttgggcgggtacacaaatccaaaccatatcaatatttaatggtgaaagactggttgctttcctcctaagatcagcag-taaaacaagaatatccactcccaccaagtctattcaacattactgaaggttatagctaagataattagacaag-aaaaagcaatgaagtatatttagatcggaaagaaagaagtaaaactatattcacagatgacatgatcttttatat--aaaaaatactaaagaatccactaaagagttattagaactaccaagttcagcaaggataaaggatata----------acaccagtatacaaaaataaattatatttctaaatccttgcaatgacaaatccagaaatgaaattaag-aaaacaattccatttgtagtaactttaaaggaacaaaatacttagaagcaaatttaac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29542475 521 -  71996105 aaaactcactatcatgagaacagcaagggggaagtcca-cccccatgacccaatcacctcgcaccacacccttcctccaacactggggattacaatttgacatgagatttgggcggatacacaaatccaaaccatatcaatatttaatggtgaaagactggttgctttcctactaagatcagcag-taaaacaagaatatccactcccaccaagtctattcaacattactgaaggttatagctaagataattagacaag-aaaaagcaataaagtatatttagatcg----gaaagaagtaaaactatattcacagataacatgatcttttatat--aaaaaatcctaaagaatccactaaagagttattagaactactaagttcagcaaggataaaggatata----------acaccagtatacaaaaataaattatatttctaaatccttgcaatgacaaatccagaaatgaaattaag-aaaacaattccatttgtaatagctttaaaggaacaaaatacttagaagcaaatttaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     214381 525 -    735854 aaaactcactatcatgagaacagcaagggggaagtcca-cccccatgacccagtcacctcgcaccacacccttcctccaacactggggattacaatttgatatgagatttgggcgggtacacaaatccaaaccatatcaatatttaatggtgaaagactggttgctttcctcctaagatcagcag-taaaacaagaatatccactcccaccatgtctattcaacattactgaaggttatagctaagataattagacaag-aaaaagcaataaagtatatttagatcggaaagaaagaagtaaaactatattcacagatgacatgatcttttatat--aaaaaatcctacagaatccactaaagagttattagaactactaagttcagtaaggataaaggatata----------acaccagtatacaaaaataaattatatttctaaatccttgcaatgacaaatccagaaatgaaattaag-aaaacaattccatttgtaatagctttaaaggaacaaaatacttagaagcaaatttaac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     179924 525 -   1829203 aaaactcactctcatgagaacagcaagggggaagtcca-cccccatgacccaatcacctcacaccacacccttcctccaacactgggcattacaatttgacatgagatttgggtgggtacacaaatccaaaccatatcaatatttaatggtggaagactggttgctttcctcctaagatcagcag-taaaacaagaatatccactcccaccatgtctattcaacattactgaaggttgtagctaagataattagacaat-aaaaagcaatgaagtatatttagatcggaaagaaagaagtaaaactacattcacagatgacatgatcttttatat--aaaaattcctaaagaatccactaaagagttattagaactactaagttcagcaaggataaaggatata----------acaccagtgtacaaaaatcaattatatttctaaatccttgcaatgacaaatccagaaatgaaattaag-aaaacaattccatttgtaatagctttaaaggaacaaaatacttagaagcaaatttaac
i colAng1.NW_012115577v1   C 0 I 309
s calJac3.chr4             30355857 515 + 171630274 aaaactcactatcatgagaacagcaa-ggggaactcca---cccatgaccccatcaactcccaccacactcttcctccaacactggggattacaatttgacatgagatttgggcaggcacacaaatccaaaccatatcagtattcgatggtgaaagactggttgctttcttcctaagatcaacaa-taaaacaagaatatcctgtctcactaggtctattcaaca-------------cagctaagataattaaaccca-aaaaagcaataaagtatattcagattggaaagaa--aagtcaaactatattcacagatgacatgatcttttatataaaaaaaatcctaaagaatccactaaagagttattagaactagtaagttcagcaaggataaaggatataaaagtcaattataccagcatacaaaagtcaattatatttctaaactcttacaatgacaaatccagaaatgaaattaag-gaaacaattccatttgtaatagctttaaaggaacaaaa----taagagcaaatttaac
i calJac3.chr4             C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           179025 1980 +    515838 I
e otoGar3.GL873550           215659 12540 +  18854210 I
e aotNan1.NW_018496904v1     295085 3938 -    383796 I
e cebCap1.NW_016107755v1     812329 1221 -   1771730 I

a score=1407443.000000
s hg38.chr6_GL000254v2_alt  1392004 219 +   4827813 aaaagaagtgcaactcaaacatcaatgaaagaaattaaaaatctaaataaatggggtaaagttcatggatt--agatttaatataactcaatgattatatttccaaactga----tagattcagcacaatccctatcagattcctaaatgacttcttcgtagaaatttgcaaactaattgtaaatttataaagaaattaaagggacgcagactatgcaaacaatc
s panTro5.chr6             30265409 219 + 175400573 aaaataagtgcaactcaaacatcaatgaaagaaattaaaaatctaaataaatggggtaaagttcatggatt--agatttaatataactcaatgattatatttccaaactga----tagattcagcacaatccctatcagattcctaaatgacttcttcgtagaaatttgcaaactaattgtaaatttataaagaaattaaagggacgcagactatgcaaacaatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30495925 219 + 173848474 aaaataagtgcaactcaaacatcaatgaaagaaattaaaaatctaaataaatggggtaaagttcatggatt--agatttaatataactcaatgattatatttccaaactga----tagattcagcacaatccctatcagattcctaaatgacttcttcgtagaaatttgcaaactaattgtaaatttataaagaaattaaagggacgcagactatgcaaacaatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     202526 219 +   2037526 aaaagaagtgcaactcaaacatcaatgaaagaaattaaaaatctaaataaatggggtaaagttcatggatt--agatttaatataactcaatgattatacttccaaactga----tagattcagcacaatccctatcagattcctaaatgacttctttgtagaaatttgcaaactaattctaaatttataaagaaattaaagggacgcagactatgcaaacaatc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74874907 217 + 122973662 aaaagaagcacaaatcaaacatcagtgaaagaaattaaaaatctaaataaatggggtaaagttcatggatt--agatttaatataactcaatgattatatttccaaac--a----tagattcagcacaatccctatcagattcctaaatgacttctttgtagaaatttgcaaactaattgtaaatttgtaaagaaattaaagggacacagactatgcaaacaatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30748094 219 + 172585720 aaaagaagtgcaaatcaaacattgaggaaagaaattaaaaatctaaataaatggagtaaagttcatggatt--atatttaatataactcaatgattatatttccaaactga----cagattcatcacaatccctatcaggttcctaaatgacttcttcatagtaatttgcaaactgattataaatttataaagaaattaaagggacacagactatgcaaacaatc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30043244 219 - 170955103 aaaagaagtgcaaatcaaacattgatgaaagaaattaaaaatctaaataaatggggtaaagttcatggatt--atatttaatataactcaatgattatatttccaaactga----cagattcatcacaatccctatcagattcctaaatgacttcttcatagtaatttgcaaactgattataaatttataaagaaattaaagggacacagactatgcaaacaatc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     292548 219 +   1495729 aaaagaagtgcaaatcaaacattgatgaaagaaattaaaaatctaaacaaatggggtaaagttcatggatt--atatttaatataactcaatgattatatttccaaactga----cagattcatcacaatccctatcagattcctaaatgacttcttcatagtaatttgcaaactgattataaatttataaagaaattaaagggacacagactatgcaaacaatc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     387687 219 -    863181 aaaagaagtgcaaatcaaacattgatgaaagaaattaaaaatctaaataaatggggtaaagttcatggatt--atatttaatgtaactcaatgattatatttccatactga----cagattcatcacaatccctatcagattcctaaatgacttcttcatagtaatttgcaaactgattataaatttataaagaaattaaagggacacagactatgcaaacaatc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29542996 218 -  71996105 aaaagaagtgcaaatcaaacattgatgaaagaaattaaaaatctaaataaatggggtaaagctcatggatt--atattt-atataactcaatgattatatttccaaactga----cagattcatcacaatccctatcagattcctaaatgacttcttcatagtaatttgcaaactgattataaatttataaagaaattaaagggacacagactatgcaaacaatc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     214906 219 -    735854 aaaagaagtgcaaatcaaacattgatgaaagaaattaaaaatctaaataaatggggtaaagttcatggatt--atatttaatataactcaatgattatatttccaaactga----cagattcatcgcaatctctatcagattcctaaatgacttcttcatagtaatttgcaaactgattataaatttataaagaaattaaagggacacagactatgcaaacaatc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     180758 214 -   1829203 aaaagaagtgcaaatcaaacattgatgaaagaaattaaaaatct----aaatggagtaaagttcatggatt--atatttaacataactcaatgattatatttccaaactga----cagattcatcacaatctctatcagattcctaaatgacttcttcatagtaa-ttgcaaactgattataaatttataaagaaattaaagggacacagactatgcaaacaatc
i colAng1.NW_012115577v1   I 309 C 0
s calJac3.chr4             30356372 214 + 171630274 aaaagaagtgcaaatcaaacattcatgaaagaaattaaaaatctaaataaatgtggtaaagttcatggattagagatttaatataactcaatgattatatttccaaactgatttttagattcagcacaatct-----------ctaaatgacttatttgtagagatttgcaaactgattttaaatttataaggaaactgaagggacaaagactatgcaaacaatc
i calJac3.chr4             C 0 I 579
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           179025 1980 +    515838 I
e otoGar3.GL873550           215659 12540 +  18854210 I
e aotNan1.NW_018496904v1     295085 3938 -    383796 I
e cebCap1.NW_016107755v1     812329 1221 -   1771730 I

a score=4408881.000000
s hg38.chr6_GL000254v2_alt  1392223 758 +   4827813 ttgaaaaaaagaacaaagggccaggcacagtggctcatgcctgtaatcaatcgcagcactttgggaggccgaggcaggaggattgcttgaggccaga------------agttcaagaccagcctgggcaacacagcaagatcctgtctctac-aaaaaataaaaattagcggggcatggtggtacacacctgtcatcccagctacttgggaggctgaggcagggggattgctttagcctagaaggttgaggctgcagtgagccatgattatgccactgcactacagtgtgggttacagggtaagaaactgtctctaaaaaataaaaagaaggaagaaaagaacaaagtagaactcattctttccagtttcaaaacatcgcataaagtaatggtaatcaagacagtgtggtacttgcataagatagacatagatcaatagaatagaactgaaattcagaaataaaaccatgtgtctactgtcaactgattttcagcaagggtgctgagcacattcaacgggggaaagcacagtcttttcaacaaatggtactggggaaacttgatagccacatacaaaatgatggagtggaccttatggtggttgaagtgtgtactccgaaaggtttgtctaagacctgaccaccagtacctgtgaacgtgaacttatttagaaatggtgtctttgtatatgaaattaagttcaggttcccaagaaaagatcatcctggatttagggtgggacctaaatctagtgactggtgtcttaat-----aa
s panTro5.chr6             30265628 758 + 175400573 ttgaaaaaaagaacaaagggccaggcacagtggctcatgcctgtaatcaatcgcagcactttgggaggccgaggcaggaggattgcttgaggccaga------------agttcaagaccagcctgggcaacacagcaagatcctgtctctac-aaaaaataaaaattagcggggcatggtggtacacacctgtcatcccagctacttgggaggctgaggcagggggattgctttagcctagaaggttgaggctgcagtgagccatgattatgccactgcactacagtgtgggttacagggtaagaaactgtctctaaaaaataaaaagaaggaagaaaagaacaaagtagaactcattctttccagtttcaaaacatcgcataaagtaatggtaatcaagacagtgtggtacttgcataacatagacatagatcaatagaatagaactgaaattcagaaataaaaccacgtgtctacggtcaactgattttcagcaagggtgctgagcacatccaatgggggaaagcacagtcttttcaacaaatggtactggggaaacttgatagccacatacaaaatgatggagtggaccTTATGGTggttgaagtgtgtactccgaaaggtttgtctaagacctgaccaccagtacctgtgaacgtgaacttatttagaaatggtgtctttgtatatgaaattaagttcaggttcccaagaaaagatcatcctggatttagggtgggacctaaatcgaatgactggtgtcttaat-----aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30496144 758 + 173848474 ttgaaaaaaagaacaaagggccaggcacagtggctcatgcctgtaatcaatcgcagcactttgggaggccgaggcaggaggactgcttgaggccaga------------agttcaagaccagcctgggcaacacagcaagatcctgtctctac-aaaaaataaaaattagcggggcatggtggtacacacctgtcatcccagctacttgggaggctgaggcagggggattgctttagcctagaaggttgaggctgcagtgagccatgattatgccactgcactacagtgtgggttacagggtaagaaactgtctctaaaaaataaaaagaaggaagaaaagaacaaagtagaactcattctttccagtttcaaaacatcgcataaagtaatggtaatcaagacagtgtggtacttgcataacatagacatagatcaatagaacagaactgaaattcagaaataaaaccatgtgtctacggtcaactgattttcagcaagggtgctgagcacatccaacgggggaaagcacagtcttttcaacaaatggtactggggaaacttgatagccacatacaaaatgatggagtggaccTTATGGTggttgaagtgtgtactccgaaaggtttgtctaagacctgaccaccagtacctgtgaacgtgaacttatttagaaatggtgtctttgtatatgaaattaagttcaggttcccaagaaaagatcatcctggatttagggtgggacctaaatcgaatgactggtgtcttaat-----aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     202745 758 +   2037526 ttgaaaaaaagaacaaagggccaggcacagtggcttatgcctgtaatcaatcacagcactttgggaggccgaggcaggaggattgcttgaggccaga------------agttcaagaccagcctgggcaacacagcaagatcctgtctctac-aaaaaataaaaattagcggggcatggtggtacacacctgtcatcccagctacttgggaggctgaggcagggggattgctttagcctagaaggttgaggctgcagtgagccatgattatgccactgcactacagtgtgggttacagggtaagaaactgtctctaaaaaataaaaagcaggaagaaaagaacaaagtagaactcattctttccagtttcaaaacatcgcataaagtaatggtaatcaagacagtgtggtacttgcataagatagacatagatcaatagaatagaactgaaattcagaaataaaaccatgtgtctacggtcaactgattttcagcaagggtgctgagcgcattcaacgggggaaagcacagtcttttcaacaaatggtactggggaaacttgatagccacatacaaaatgatggagtggaccTTATGGTggttgaagtgtgtactctgaaaggtttgtctaaggcctgaccaccagtacctgtgaacgtgaacttatttagaaatggtgtctttgtatatgaaattaagttcaggttcccaagaaaagatcatcctggatttagggtgggacctaaatccagtgactggtgtcttaac-----aa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74875124 757 + 122973662 ttg-aaaaaagaacaaagggccaggcacagtggctcatgcctgtaatcaatcgcagcactttgggaggccgaggcaggaggattgcttgaggccaga------------agttcaagaccagcctgggcaacacagcaagatcctgtctctac-aaaaaataaaaattagcggggcatggtggtacacacctgtcatcccagctatttgggaggctgaggcagggggattgctttagcctagaaggttgaggctgcagtgagccatgattatgccactgcactacagtgtgggttacagggtaagaaactgtctctaaaaaataaaaagaaggaagaaaagaacaaagtagaactcattctttccggtttcaaaacatcccataaagtaatggtaatcaagacagtgtggtacttgcataagatagacatagatcaatagaatagaattgaaactcagaaataaaaccatgtgtctattgtcaactgattttcagcaagggtgctgagcacattcaacgggggaaagcatagtcttttccacaaatggtactggggaaacttgatagccacatacaaaatgatggagtggaccttatggtggttgaagtgtgtactccgtaaggtttgtctaagacctgaccaccagtacctgtgaatgtgaacttatttagaaatggtgtctttgtctatgaaattaagttcaggttcccaagaagagatcatcctgaatttagggtgggacctaaatccaatgactggtgtcttaat-----aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30748313 771 + 172585720 ttgaaaaaaagaacaaagggccagacacagtggctcatgcctgcaatcaatcgcagcactttgggaggctgaggctggaggattgcttgaggctagaagttcaagtagaagttcaagaccagcctgggcaacacagcaagatcctgtctctacaaaaaaattaaaattagtggggcatggtggtacacacctgtcatcccagctacttgggaggctgaggcagggggattgctttagcctagaaggttgagggtgcagtgagccatgattatgccactgcactccagtgtgtgttacagggtaagaaactgtctctaaaaaataaaaagaaggaagaaaagaacaaagcagaactcattctttccagtttcaaaacatcacataaagtaatggtaatcaagacagtgtggtacttgtgtaagacagacatagatcaatagaatagacatgaaattcagaaataaaaccgtgtgtctatggtcaacagattttcagcaagggtgctgagcacattcgatgggggaaagaacagtcttttcaacaaatggtactggggaaacttgatagccacatacaaaatgatgcaggggaccTTATGGTggttgaagtgtgtactccgaaaggtttgtctaagacctgaccaccaggacctgtgaatgtgaacttatttagaaatggtgtctttgtatatgtaattaagttcaggttcccaagaagagatcatcctagatttagggtgggacctaaatccaatgactggtgtcttaat-----aa
i rheMac8.chr4             C 0 I 5
s macFas5.chr4             30043463 766 - 170955103 ttgaaaaaaagaacaaagggccaggcacagtggctcatgcctgcaatcaatcgcagcactttgggaggctgaggctgaaggattgcttgaggctagaagttcaagtagcagttcaagaccagcctgggcaacacagcaagatcctgtctctacaaaaaaattaaaattagtggggcatggtggtacacacctgtcatcccagctacttgggaggctgaggcagggggattgctttagcctagaaggttgagggtgcagtgagccatgattatgccactgcactccagtgtgcgttacagggtaaaaaactgtctctaaaaaataaaaagaaggaagaaaagaacaaagcagaactcattctttccagtttcaaaacatcacatatagtaatggtaatcaagacagtgtggtacttgtgtaagacagacatagatcaatagaa-----atgaaattcagaaataaaaccatgtgtctatggtcaacagattttcagcaagggtgctgagcacattcgatgggggaaagaacagtcttttcaacaaatggtactggggaaacttgatagccacatacaaaatgatgcaggggaccttatggtggttgaagtgtgtactccgaaaggtttgtctaagacctgaccaccaggacctgtgaatgtgaacttatttagaaatggtgtctttgtatatgtaattaagttcaggttcccaagaagagatcatcctagatttagggtgggacctaaatccaatgactggtgtcttaat-----aa
i macFas5.chr4             C 0 I 5
s macNem1.NW_012012100v1     292767 764 +   1495729 ttgaaaaaaagaacaaagggccaggcacagtggctcatgcctgcaatcaatcgcagcactttgggaggctgaggctgaaggattgcttgaggctagaagttcaagtagcagttcaagaccagcctgggcaacacagcaagatcctgtctctacaaaaaaattaaaattagtggggcatggtggtacacacctgtcatcccagctacttgggaggctgaggcaggaggattgctttagcctagaaggttgagggtgcagtgagccatgattatgccactgcactccagtgtgcgttacagggtaaaaaactgtctctaaaaaataaaaagaaggaagaaaagaacaaagcagaactcattctttccagtttcaaaacatcacatatagtaatggtaatcaagacagtgtgatacttgtgtaagacagacatagatcaatagaa-----atgaaattcagaaataaaaccatgtgtctatggtcaacagattttcagcaagggtgctgagcacattcgatgggggaaagaacagtcttttcaacaaatggtactggggaaacttgatagccacatacaaaatgatgcaggggaccTTATGGTggttgaagtgtgtactccgaaaggtttgtctaagacctgaccaccaggacctgtgaatgtgaacttatttagaaatggtgtctttgtatatgtaattaagttcaggttcccaagaagagatcatcctagatttagggtgggacctaaatccaatgactggtgtcttaat-------
i macNem1.NW_012012100v1   C 0 I 2
s cerAty1.NW_012002535v1     387906 771 -    863181 ttgaaaaaaagaacaaagggccaggcacagtggctcatgcctgcaatcaatcgcagcactttgggaggtggaggctgaaggattgcttgaggctagaagttcaagtagaagttcaagaccagcctgggcaacacagcaagatcctgtctctacaaaaaaattaaaattagtggggcatggtggtacacacctgtcatcccagctacttgggaggctgaggcagggggactgctttagcctagaaggttgagggtgcagtgagccatgattatgccactgcactccagtgtgtgttacagggtaagaaactgtctctaaaaaataaaaagaaggaagaaaagaacaaagcagaactcattctttccagtttcaaaacatcacataaagtaatggtaatcaagacagtgtggtacttgtgtaagacagacatagatcaatagaatagacatgaaattcagaaataaaaccatgcgtctatggtcaacagattttcagcaagggtgctgagcacattcgatgggggaaagaacagtcttttcaacaaatggtaccggggaaacttgatagccacatacaaaatgatgcaggggaccttacGGTggttgaaatgtgtactccgaaaggtttgtctaagacctgaccaccagtacctgtgaatgtgaacttacttagaaatggtgtctttgtatatgtaattaagttcaggttcccaagaagagatcatcctggatttagggtgggacctaaatccaatgactggtgtcttgat-----aa
i cerAty1.NW_012002535v1   C 0 M 1607
s chlSab2.chr17            29543214 771 -  71996105 ttgaaaaaaagaacaaagggccaggcacagtggcttatgcctgcaatcaatcgcagcactttgggaggcggaggctgaaggattgcttgaagctagaagttcaagtagaagttcaagaccagcctgggcaacacagcaagatcctgtctctacaaaaaaattaaaattagtggggcatggtggtacacacctgtcatcccagctacttgggaggctgaggcagggggattgctttagcctagaaggttgagggtgcagtgagccatgattatgccactgcactccagtgtgcgttacagggtaagaaactgtctctaaaaaataaaaagaaggaagaaaagaacaaagcagaactcattctttccagtttcaaaacatcacataaagtaatggtaatcaagacagtgtggtacttgtgtaagacacacatagatcaatagaatagaaatgaaattcagaaataaaatcatgtgtctatggtcaacagattttcagcaagggtgctgagcacattcgatgggggaaagaacagtcttttcaacaaatggtaccggggaaacttgatagccacatacaaaatgatgcaggggaccttatggtggttgaagtgtgtactccgaaaggtttgtctaagacctgaccaccaggacctgtgaatgtgaacttatttagaaatggtgtctttgtatatgtaattaagttcaggttcccaagaagagatcatcctggatttagggtgggacctaaatccaatgactggtgtcttaat-----aa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     215125 776 -    735854 ttgaaaaaaagaacaaagggccaggcacagtggctcatgcctgcaatcaatcgcagcactttgggaggctgaggctgaaggattgcttgaggctagaagttcaagtagcagttcaagaccagcctgggcaacacagcaagatcctgtctctacaaaaaaattaaaatgagtggggcatggtggtacacacctgtcattccagctacttgggaggctgaggcagggggattgctttagcctagaaggttgagggtgcagtgagtcatgattatgccactgcactccagtgtgcgttacagggtaaaaaactgtctctaaaaaataaaaagaaggaagaaaagaacaaagcagaactcattctttccagtttcaaaacatcacataaagtaatggtaatcaagacagtgtggtacttgtgtaagacagacacagatcaatagaatagacatgaaattcagaaataaaaccatgtgtctatggtcaacagattttcagcaagggtgctgagcacattcgatgggggaaagaacagtcttttcaacaaatggtactggggaaacttgatagccacatacaaaatgatgcaggggaccTTATGGTggttgaagtgtgtactccgaaaggtttgtctaagacctgaccaccagtacctgtgaatgtgaacttatttagaaatggtgtctttgtatatgtaattaagttcaggttcccaagaagagatcatcctggatttagggtgggacctaaatccaatgactggtgtcttaataaaagaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     180972 767 -   1829203 ttgaaaaaaagaacaaagggccaggcacagtggctcatgcctgtaatcaatcgcagcactttgggaggctgaggctggaggattgcttgaggctagaagttcaagtacaagttcaagaccagcctgggcaacacagcaagatcctgtctctacaaaaaaattaaaattagtggggcatggtggtacacacctgtcatcccagctacttgggaggctgaggcagggggattgctttagcctagaaggctgagggtgcagtgagccatgattatgccactgcactccagtgtgcgttacagggtaagaaactgtctctaaaaaataaaaagaaggaagaaaagaacaaagtagaactcattctttcccatttcaaatcatcacataaagtaatggtaatcaagacagtgtggtacttatgtaagacagacatagatcaatagaatagaaatgaaattcagaaataaaaccatgtgtctatggtcaacacattttcagcaagggtgctgagcacactcgatgggggaaagaacagtcttttcaacaaatggtactggggaaacttgatagccacatacaaaatgatgcaggggaccTTATGGTggttgaagtgtgtactccgaaaggtttgtctaagacctgaccaccagtacctgtgaatgtgaacttatttaga----gtgtctttgtatatgtaattaagttcaggttcccaagaagagatcatcctggatttagggtgggacctaaatccaatgactggtgtcttaat-----aa
i colAng1.NW_012115577v1   C 0 I 5
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           179025 1980 +    515838 I
e otoGar3.GL873550           215659 12540 +  18854210 I
e aotNan1.NW_018496904v1     295085 3938 -    383796 I
e cebCap1.NW_016107755v1     812329 1221 -   1771730 I
e calJac3.chr4             30356586 579 + 171630274 I

a score=2921177.000000
s hg38.chr6_GL000254v2_alt  1392981 615 +   4827813 aaaagaaggagatatgacataa--acagagaagagacacaggcaagaatgccatgtgaagatgaaggcaaagatttcagtgatgtatctccaagccaatggagcaacaactaccaacagctaccagaagttaggaaagaatcatggaatgaactttcccccagagcctccagaagaaactaatcctgccaacacctggatttcaaacttctggcctccagaactgtgacagaatacatgtttgctgttttaagccatcaaatcttggcaatgtgttacacaaggtctaagaaactaatacaggcctttacttcacactatatacaaaaataagctcaaaatggaagaaagatctaaatgttagtggtgaaattac-aaaattcttggaggaaaacctaggtgataaatctttatgaactggccgggtgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggtggatcacaaggtcaggagtttg-agaccagcctgaccaacatggtgaaactccgtctctactaaaaatataaaaattagccgggtgtggtggtgcacacctataatcccagctactcagaaggctgaggcaggagaatggctt
s panTro5.chr6             30266386 615 + 175400573 aagagaaggagatatgacataa--acagagaagagacacaggcaagaatgccatgtgaagatgaaggcaaagatttcagtgatgtatctccaagccaatggagcaacaactaccaacagctaccagaagttaggaaagtatcatggaatgaactttcccccagagtctccagaagaaactaatcctgccaacacctggatttcaaacttctggcctccagaactgtgacagaatacatgtttgctgttttaagccatcaaatcttggcaatgtgttacacaaggtctaagaaactaatacaggcctttacttcacactatatacaaaaataagctcaaaatggaagaaagacctaaatgttagtggtgaaattac-aaaattcttggaggaaaacctaggcgataaatctttatgaactggccgggtgcggtggctcatgcctataatcccagcactttgggaggccgaggcaggtggatcacaaggtcaggagtttg-agaccagcctgaccaacatggtgaaactccgtctctactaaaaatataaaaattagccgggtgtggtggtgcacacctataatcccagctactcagaaggctgaggcaggagaatggctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30496902 615 + 173848474 aagagaaggagatatgacataa--acagagaagagacacaggcaagaatgccatgtgaagatgaaggcaaagatttcagtgatgtatctccaagccaatggagcaacaactaccaacagctaccagaagttaggaaagtatcatggaatgaactttcccccagagcctccagaagaaactaatcctgccaacacctggatttcaaacttctggcctccagaactgtgacagaatacatgtttgctgttttaagccatcaaatcttggcaatgtgttacacaaggtctaagaaactaatacaggcctttacttcacactatatacaaaaataagctcaaaatggaagaaagacctaaatgttagtggtgaaattac-aaaattcttggaggaaaacctaggcgataaatctttatgaactggccgggtgcggtggctcatgcctataatcccagcactttgggaggccgaggcaggtggatcacaaggtcaggagtttg-agaccagcctgaccaacatggtgaaactccgtctctactaaaaatataaaaattagccgggtgtggtggtgcacacctataatcccagctactcagaaggctgaggcaggagaatggctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     203503 615 +   2037526 aagagaaggagatatgacataa--acagagaagagacacaggcaagaatgccatgtgaagatgaaggcaaagatttcagtgatgtatctccaagccaatggagcaacaactaccaacagctaccagaagttaggaaagtatcatggaatgaactttcccccagagcctccagaagaaactaatcctgccaacacctggatttcaaacttctggcctccagaactgtgacagcatacatgtttgctgttttaagccatcaaatcttggcaatgtgttacacaaggtctaagaaactaatacaggcctttacttcacactatatacaaaaataagctcaaaatggaagaaagacctaaatgttagtggtgaaattac-aaaattcttggaggaaaacctaggcgataaatctttatgaactggccgggtgcggtggctcatgcctgtaatccccgcactttgggaggccgaggcaggtggatcacaaggtcaggagtttg-agaccagcctgaccaacatggtgaaactccgtctctactaaaaatataaaaattagccgggtgtggtggtgcacacctataatcccagctactcagaaggctgaggcaggagaatggctt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74875881 615 + 122973662 aagagaaggagatgtgacataa--acagagaagagacacagacaagaatgccacgtgaagatgaaggcaaagacttcagtgatgtatctccaagccaatggagcaaaaactaccaacagctaccagaagttaggaaagtatcatggaatgaactttcccccagagcctccagaataaactaatcctgccaacacctggatttcaaacttctggcctccagaactgtgacagaatacatgtttgctgttttaagccatcaaatcttggcaatgtgttacacaaggtctaagaaactaatacaggcctttacctcacactgtatacaaaaataagctcaaaatggaagaaagacctaaatgttagtggtgaaattac-aaaattcttggaggaaaacctaggcgataaagctttatgaactggctgggtgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcggatcacaaggtcaggagtttg-agaccagcctgaccaacatggtgaaactctgtctctactaaaaatacaaaaattagccaggtgtggtggtgcacacctgtaatcccagctactcaggaggctgaggcaggagaatggctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30749089 617 + 172585720 aagagagggagatgtgacataaacacagagaagagacacagacaagaatgccatgtgaagatgaaggcaaagatttcggtgatgtatctccaagccaatggaacaacaacgaccaacagctaccagaagttaggaaagtaccatggaatgaacttt-ccccagagccttcagaagaaactaatcctgccagcacctggatttcaaacttctggcctccagaactgtgagagaatacacgtttgctgttttaagccatcaaatcttggcaatgtgttacacgaggtctaggaaactaatacaGGActttacctcacactatatacaaaaataagctcaaaatagaagaaagacctaaatgttagtggtgaaattacaaaaattcttgcaggaaaacctaggtgataaatctttatgaactggccgggtgcggtggctcacacctgtaatcccagcactttgggaggctgagacaggaggatcacaaggtcaggagtttg-agaccatcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaattagccgggtgtggtggcatgcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgctt
i rheMac8.chr4             I 5 C 0
s macFas5.chr4             30044234 617 - 170955103 aagagagggagatgtgacataaacacagagaagagacacagacaagaatgccatgtgaagatgaaggcaaagatttcggtgatgtatctccaagccaatggaacaacaacgaccaacagctaccagaagttaggaaagtaccatggaatgaacttt-ccccagagccttcagaagaaactaatcctgccagcacctggatttcaaacttctggcctccagaactgtgagagaatacacgtttgctgttttaagccatcaaatcttggcaatgtgttacacgaggtctaggaaactaatacaggactttacctcacactatatacaaaaataagctcaaaatagaagaaagacctaaatgttagtggtgaaattacaaaaattcttgcaggaaaacctaggtgataaatctttatgaactggccgggtgcggtggctcacacctgtaatcccagcactttgggaggctgagacaggaggatcacaaggtcaggagtttg-agaccatcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaattagccgggtgtggtggcatgcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgctt
i macFas5.chr4             I 5 C 0
s macNem1.NW_012012100v1     293533 613 +   1495729 aagagagggagatgtgacataaacacaaagaagagacacagacaagaatgccacgtgaagatgaaggcaaagacttcggtgatgtatctccaagccaatggaacaacaactaccaacagctaccagaagtcaggaaagtaccatggaatgaacttt-ccccagagccttcagaggaaactaatcctgccagcacctggatttcaaacttctggcctccagaactgtgagagaatacacgtttgctgttttaagccgtcaaatcttggcaatgtgttacacgaggtctaggaaactaatacaGGActttacctcacactatatacaaaaataagctcaaaatagaagaaagacctaaatgttagtggtgaaattacaaaaattcttgcaggaaaacctaggtgataaatctttatgaactggccgggtgcggtggctcacacctgtaatcccagcactttgggaggctgagacagga-gatcacaaggtcaggagtttgaagaccatcctgaccaacatg--ggaaccccatctctactaaaaatacaaaaattagcc-ggtgtggtggcatgcgcctgtaatcccagc-actcaggaggctgaggcaggagaatcgctt
i macNem1.NW_012012100v1   I 2 C 0
s chlSab2.chr17            29543985 617 -  71996105 aagagagggagatgtgacataaacacagagaagagacacagacaagaatgccatgtgaagatgaaggcaaagatttcggtgatgtatctccaagccaattatacaacaactaccaacagctaccagaagttgggaaagtatcatggaatgaacttt-ccccagagccttcagaagaaactaatcctgccaacacctggatttcaaacttctggcctccagaactgtgagagaatacacgtttgctgttttaagccatcaaatcttggcaatgtgttacacgaggtctaggaaactaatacaggactttacctcacactatacacaaaaataagctcaaaatagaagaaagacctaaatgttaatggtgaaattacaaaaattattgcaggaaaacctaggtgataaatctttatgaactggccgggtgcggtggctcacacctgtaatcccagcactttgggaggctgagacaggaggatcacaaggtcaggagtttg-agaccatcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaggcgtggtggcacgcgcctgtaatcccagctactcgggaggctgaggcaggagaatcgctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     215901 617 -    735854 aagagagggagatgtgacataaacacagagaagagacacagacaagaatgccatgtgaagatgaaggcaaggatttcagtgatgtatctccaagccaatggaacaacaactaccaacagctaccagaagttaggaaagtatcatggaatgaacctt-ccccagagccttcagaagaaactaatcctgccaacacctggatttcaaacttctggcctccagaactgtgagagaatacacgtttgctgttttaagccatcaaatcttggcaatgtgttacacgaggtctaggaaactaatacaGGActttacctcacactatatacaaaaataagctcaaaatagaagaaagacctaaatgttagtggtgaaattacaaaaattcttgcaggaaaacttaggtgataaatcttcatgaactggccgggtgcggtggctcacacctgcaatcccagcactttgggaggctgagacaggaggatcacgaggtcaagagtttg-agaccatcctgaccaacatggtgaaactccatctctactaaaaatacaaaaattagccgggcgtggtggcacgcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgctt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     181744 616 -   1829203 aagagagggagatgtgacataaacacagagaagagacacagacaagaatgccatgtgaagatgaaggcaaagattttggtgatgtatctccaagccaatggaacaacaactaccaacagctaccacaagttaggaaagtatcatggaatgaacttt-ccccagagccttcagaagaaactaatcctgccaacacctggatttcaaacttctggcctccagaacagtgagagaatacacgtttgctgttttaagccatcaaatcttggcaatgtgttacacaaggtctaggaaactaatacaGGActttacctcacactatatacaaaaataagctcaaaatagaagaaagacctaaatgttagtggtgaaattacaaaaattcttggaggaaaacctaggcgataaatctttatgaactggccgggtgcggtggctcacacttggaatcccagcactttgggaggctgagacaggaggatcacgaggtcaggagtttg-agaccatcctgaccaacatggtgaaaccccgtctctactaaaaatac-aaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatcgctt
i colAng1.NW_012115577v1   I 5 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           179025 1980 +    515838 I
e otoGar3.GL873550           215659 12540 +  18854210 I
e aotNan1.NW_018496904v1     295085 3938 -    383796 I
e cebCap1.NW_016107755v1     812329 1221 -   1771730 I
e calJac3.chr4             30356586 579 + 171630274 I
e cerAty1.NW_012002535v1     388677 1607 -    863181 M

a score=4157730.000000
s hg38.chr6_GL000254v2_alt  1393596 790 +   4827813 gaacccaggaggcagaggttgcagtgagccgagatcacaccactccactccagcctgggcaacagagtgagactccgtctc-aaatatatatat------------atata------------------tatatatatatatttatgaactcaggttggacaatggattcttagatattatgccaaagcacaaacaaaagatattagataatattgagaaaaattagatgtcatcaaaattaaaatgtttatgcttcaaaggacactatcaagaaagtgatccacaatatatacatatatcaaaacatcacattgtaccccatatgtgtattatttactaattaacagtaaacatttagatcaaaaaattaaaatagttttaaaaattaagaattttttta---aaagtg-aaaaaaacccacaggaaaggagaaaagatttgcaaatcatacatttaacaagaga--tgtttctagaatatataacaatctcctacaacttaattgcaaaacacacataatcccaattttaaaatgagcaaaggagtccgagcgcagtggctcacgcctgtaatctcagcactttgggaggctgaagtgggtggatcacttgaggtcaggagttcgagatcagcctcaccaacatggtaaaaccctgcctccactaaaa---atac-aaaattagctgggtgtggtggcacacacctgtagtcccagctacttgggaggctgggacacaagaatcgcttgaacccaagagacgggggttgcagtaagccaagatcgcaccactccactccagcctggatgacagagcaagactccgtctc
s panTro5.chr6             30267001 821 + 175400573 gaacccaggaggcagaggttgcagtgagccgagatcacgccactccactccagcctgggcaacagagtgagactccgtctc-aaatatatatatacacacacacacatatatatatatgtgtgtgtgtgtatatatatatatttatgaactcaggttggacaatggattcttagatattatgccaaagcacaaacaaaagatattagataatattcagaaaaattagatgtcatcaaaattaaaatgtttatgcttcaaaggacactatcaagaaagtgatccacaatatatacatatatcaaaacatcacactgtaccccatatgtgtattatttactaattaacagtaaaCACTTAGATCAaaaaattaaaatagttttaaaaattaagaattttttta---aaagtg-aaaaaaacccgcaggaaaggagaaaagatttgcaaatcatacatctaacaagaga--tgtttctagaatatataacaatctcctacaacttaatcgcaaaacacacataatcccaattttaaaatgagcaaaggaggccgagcgcagtggctcacgcctgtaatctcagcactttgggaggctgaagtgggtggatcacttgaggtcaggagttcaagatcagcctcaccaacatggtaaaaccctgcctccactaaaa---atacaaaaattagctgggtgtggtggcacacacctgtagtcccagctacttgggaggctgggacacaagaatcgcttgaacccaagagacggaggttgcagtgagccaagatcgcaccactccactccagcctggatgacagagcaagactccgtctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30497517 819 + 173848474 gaacccaggaggcagaggttgcagtgagccgagatcacgccactccactccagcctgggcaacagagtgagactccgtctc-aaatatatatat--acacatatacatatatatatatGTGTGTGTGTatatatatatatatttatgaactcaggttggacaatggattcttagatattatgccaaagcacaaacaaaagatattagataatattcagaaaaattagatgtcatcaaaattaaaatgtttatgcttcaaaggacactatcaagaaagtgatccacaatatatacatatatcaaaacatcacactgtaccccatatgtgtattatttactaattaacagtaaaCATTTAGATCAaaaaattaaaatagttttaaaaattaagaattttttta---aaagtg-aaaaaaacccacaggaaaggagaaaagatttgcaaatcatacatctaacaagaga--tgtttctagaatatataacaatctcctacaacttaatcgcaaaacacacataatcccaattttaaaatgagcaaaggaggccgagcgcagtggctcacgcctgtaatctcagcactttgggaggctgaagtgggtggatcacttgaggtcaggagttcgagatcagcctcaccaacatggtaaaaccctgcctccactaaaa---atacaaaaattagctgggtgtggtggcacacacctgtagtcccagctacttgggaggctgggacacaagaatcgcttgaacccaagagacggaggttgcagtgagccaagatcgcaccactccactccagcctggatgacagagcaagactccgtctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     204118 815 +   2037526 gaacccaggaggcagaggttgcagtgagccgagatcatgccactccactccagcctgggcaacagagtgagactccgtctc-aaatatatatat----atatatatatatatatatatatatatatatatatatatgtatatttatgaactcaggttggacaatggattcttagatattatgccaaagcacaaacaaaagatattagataatattgagaaaaattagatgtcatcaaaattaaaatgtttatgcttcaaaggacactatcaagaaagtgatccacaatatatacatatatcaaaacatcacactgtacccc--atgtgtattatttactaattaacagtaaaCATTTAGATCAAAAAATTAAAATAGTTTTAAAAATTAAGAATTTTTTTA---aaagtg-aaaaaaacccacaagaaaggagaaaagatttgcaaatcatacatctaacaagaga--tgtttctagaatatataacaatctcctacaacttaatcgcaaaacacacataatcccaattttaaaatgagcaaaggaggccgagcgcagtggctcacgcctgtaatctcagcactctgggaggctgaagtgggtggatcacttgaggtcaggagttcgagatcagcctcaccaacatggtaaaaccctgcctccactaaaa---atacaaaaattagctgggtgtggtggcacacacctgtagtcccagctacttgggaggctgggacacaagaatcgcttgaacccaagagacggaggctgcagtgagccaagatcgcaccactccactccagcctggatgacagagcaagactccgtctc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74876496 769 + 122973662 gaacccaggaggcagaggttgcagtgagccaagatcacgccactccactccagcctgggcaacagagtgagactccgtctc-aaatatatatat----------------------------------------------ttttatgaactcaggttggccaatgcattcttagatattatgccaaagcacaaacaaaagatattagataatattgagaaaaattagatctcatcaaaattaaa------atgcttcaaagggcactatcaagaaagtgatccacaatatatacatatatcaaaacatcatactgtaccccatatgtgtattatttactaattaacagtaaaCATTTAcatcaaaaaattaaa--aattttaaaaattaagaattttttta---aaagtg-aaaaaaacccacaggaaaggagaaaagatttgcaaatcatacatctaacaagagatctgtttctagaatatataacaatctcctacaacttaatcgcaaaacacatacaatcccaattttaaaatgagcaaaggaggccgagcgcagtggctcacgcctgtgatctcagcactttgggaggctgaagtgggtggatcacttgaggtcaggagttcgtgatcagcctcaccaacatggtgaaaccctgcctctactaaaa---atacaaaaattagctgggtgtggtggcacacacctgtagtcccagctacttgggaggctgaggcatgagaatcgcttgaacccaagagatggaggttgcagtgagccaagatcgcaccactccactccagcctggatgacagagcaagactccgtctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30749706 775 + 172585720 gaacccaggaggcagaggttgcagtgagccaagatcacaccactgcactccagcctgggcaacagagtgagactccatctc-aaaaaagtatag------------------------------------atatatatacatttgtgaactcaggttggacaatggattcttagatattatgccaaagtacaaacaaaagatattagataatattgagaaaaattagatatcatcaaatttaaaatttgtatgcttcaaaggacactatcaagaaagtgatccacaatatatacatatatcaaaacatcaccctgtaccccatatgtg---tatttactaattaacagtaaaCCTTTAAATCAAAAAATTAAAATAGTTTTAAAAATTAA----TTTTTTAaagaaagtg-aaaaaaactcataggaaaggagaaaagatttgc-aatcatacatctaacaagagatctgtttctagaatatataacaatctcttacaacttaatcacaaaacaca-ataatcccaattttaaaatgagcacaggaggctgagtgcagtggctcacgcctgtaatctcaacactttgggaggccgaagtgggtggatcacttgaggtcaggagttcaagatcagcctg------atggtgaaatcctgcctttactaaaa---atacaaaaattagctggatgtggtggcacacacctgtagtcccagctacttgggaggctgaggcacaagaactgcttgaacccaagaggcggaggttgcagtgagccaagatcacaccactacactccagcctggatgacagagtgagactctgtctc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30044851 775 - 170955103 gaacccaggaggcagaggttgcagtgagccaagatcacaccactgcactccagcctgggcaacagagtgagactccatctc-aaaaaagtatag------------------------------------atatatatacatttgtgaactcaggttggacaatggattcttagatattatgccaaagtacaaacaaaagatattagataatattgagaaaaattagatatcatcaaatttaaaatttgtatgcttcaaaggacactatcaagaaagtgatccacaatatatacatatatcaaaacatcaccctgtaccccataTGTG---TATTTACTAATTAACAGTAAACCTTTAAATCAAAAAATTAAAATAGTTTTAAAAATTAA----TTTTTTAaagaaagtg-aaaaaaactcataggaaaggagaaaagatttgc-aatcatacatctaacaagagatctgtttctagaatatataacaatctcttacaacttaatcacaaaacaca-ataatcccaattttaaaatgagcacaggaggctgagtgcagtggctcacgcctgtaatctcaacactttgggaggccgaagtgggtggatcacttgaggtcaggagttcaagatcagcctg------atggtgaaatcctgcctttactaaaa---atacaaaaattagctggatgtggtggcacacacctgtagtcccagctacttgggaggctgaggcacaagaattgcttgaacccaagaggcggaggttgcagtgagccaagatcacaccactacactccagcctggatgacagagtgagactctgtctc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     294146 766 +   1495729 gaacccaggaggcagaggttgcagtgagccaagatcacaccactgcactccagcct-ggcaacagagtgagactccatctcaaaaaaagtatag------------------------------------atatatatacatttgt-aactcaggttggacaatggattcttagatattatgccaaagtacaaacaaaagatattagataatattgagaaaaat----tatcatc-aatttaaaatttgtatgcttcaaaggacactatcaagaaagtgatccacaatatatacatatatcaaaacatcaccctgtaccccatatgtg---tatttactaattaacagtaaaCCTTTAAATCAAAAAATTAAAATA---TTAAAAATTAA----TTTTTTAaagaaagtg-aaaaaaactcataggaaaggagaaaagatttgc-aatcatacatctaacaagagatctgtttctagaatatataacaatctcttacaacttaatcacaaaacaca-ataatcccaattttaaaatgagcacaggaggctgagtgcagtggctcacgcctgtaatctcaacactttgggaggccgaagtgggtggatcacttgaggtcaggagttcaagatcagcctg------atggtgaaatcctgcctttactaaaa---atacaaaaattagctggatgtggtggcacacacctgtagtcccagctacttgggaggctgaggcacaagaattgcttgaacccaagaggcagaggttgcagtgagccaagatcacaccactacactccagcctggatgacagagtgagactctgtctc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     390284 776 -    863181 gaacccaggaggcagaggttgcagtgagccaagatcacgccactgcactccagcctgggcaaccgagtgagactccatctc-aaaaaaGTATAG------------------------------------ATATATATACAtttgtgaactcaggttggacaatggattcttagatactatgccaaagtacaaacaaaagatattagataatattgagaaaaattagatgtcatcaaatttaaaatgtgtatgcttcaaaggacactatcaagaaagtgatccacaatatatacatatatcaaaacatcaccctgtacctcataTGCG---TATTTACTAACTAACAGTAAACATTTAAATCAAAAAATTAAAATAGTTTTAAAAATTAA----TTTTTTAaagaaagtg-aaaaaaaaccataggaaaggagaaaagatttgc-aatcatacatctaacaagagatctgtttctagaatatataacaatctcttacaacttaatcacaaaacacatataatcccaattttaaaatgagcacaggaggctgagcgcagtggctcacgcctgtaatctcaacactttgggaggccgaagtgggtggatcacttgaggtcaggagttcaagatcagcctg------atggtgaaatcctgcctttactaaaa---atacaaaaattagctggatgtggtggcacacacctgtagtcccagctacttgggaggctgaggcacaagaattgcttgaacccaagaggcggaggttgcagtgagccaagatcacaccactacactccagcctggatgacagagtgagactctgtctc
i cerAty1.NW_012002535v1   M 1607 C 0
s chlSab2.chr17            29544602 780 -  71996105 gaacccaggaggcagaggttgcagtgagccaagatcacaccactgaactccggcctgggcaacagagtgagactccatctc-aaaaaagtatag------------------------------------atatatatacatttgtgaactcaggttggacaatggattcttagatactatgccaaagtacaaacaaaagatattagataatattgagaaaaattagatgtcatcaaatttaaaatttgtatgcttcaaaggacactatcaagaaagtgatccacaatatatacatatatcaaaacatcaccctgtacctcataTGCG---TATTTAC----TAACAGTAAACATTTAAATCAAAAAATTAACATAGTTTTAAAAATTAA----TTTTTTGaagaaagtgaaaaaaaaaccataggaaaggagaaaagatttgc-aatcatacatctaacaagagatctgtttctagaatatataacaatctcttacaacttaatcacaaaacacatataatcccaattttaaaatgagcacaggaggctgggcgcagtggctcaagcctgtaatcccagcactttgggaggccgagacgggcggatcac--gaggtcaggagatcgagaccatcctggcgaacacggtgaaaccccgtctctactaaaaagtacaaaaaaactagctgggcgaggtggcgggcgcctgtagtcccagttactcgggaggctgaggcaggagaatggcgtaaacccgggaggcggagcttgcagtgagctgagatctggccactacactccagcctgggcgacagagcgagactccgtctc
i chlSab2.chr17            C 0 I 3728
s manLeu1.NW_012107142v1     216518 773 -    735854 gaacccaggaggcagaggttgcagtgagccaagatcacgccactgcactccagcctgggcaacagagtgagactgcatctc-aaaaaagtatag------------------------------------atatatatacatttgtgaactcaggttggacaatggattcttagatattatgccaaagtacaaacaaaagatattagataatattgagaaaaactagatgtcatcaaatttaaaatttgtatgcttcaaaggacactatcaagaaagtgatccacaatatatacgtatatcaaaacatcaccctgtaccccataTGTG---TATTTACTaattaacagtaaacctttaaatcaaaaaattaaa--agttttaaaaattaa----TTTTTTAaagaaagtg-aaaaaaactcataggaaaggagaaaagatttgc-aatcatacatctaacaagagatctgtttctagaatatataacaatctcttacaacttaatcacaaaacaca-acaatcccaattttaaaatgagcacaggaggctgagtgcagtggctcacgcctgtaatctcaacactttgggaggccgaagtgggtggatcacttgaggtcaggagttcaagatcagcctg------atggtgaaatcctgcctttactaaaa---atacaaaaattagctggatgtggtggcacacacctgtagtcccagctacttgggaggctgaggcacaagaattgcttgaacccaagaggcggaggttgcagtgagccaagatcacaccactacactccagcctggatgacagagtgagactctgtctc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     182360 773 -   1829203 gaacccgggaggcagaggttgcagtgagccaagatcatgccactgcactccagcctgggcaacagagtgagactccatctc-aaaaaagtatag------------------------------------atatatatatatttgtgaactcaggttggacaatggattcttagatattgtgccaaagtacaaacaaaagatattagataatattgagaaaaatcagatgtcatcaaatttaaaatttgtatgcttcaaaggacactatcaagaaagtgatccacaatatatacatatatcaaaacatcaccctgtaccccatatgcg---tatttactaattaacagtaaaCATTTAAATCAAAAAATTAAAACAGTTTTAAAAATTAA----TTTTTTAaagaaagtg-aaaaaaacccataggaaaggagaaaagatttgc-aatcatacatctaacaagagatctgtttctagaatatgtaacaatctcttacaacttaatcacaaaacacatataatctcaattttgaaatgagcacaggaggctgagcgcagtggctcacgcctgtaatctcaacactttgggaggcagaagtgggtggatcacttgaggtcaggagttcaagatcagcctg------atggtgaaatcctccctttactaaaa---atacaaaaattagctggatgtggt---acacacctgtagtcccagctacttgggaggttgaggcacaagaatcgcttgaacacaagaggcggaggttgtagtgagccaagatcgcaccactacactccagcctggatgacagagtgagactctgtctc
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           179025 1980 +    515838 I
e otoGar3.GL873550           215659 12540 +  18854210 I
e aotNan1.NW_018496904v1     295085 3938 -    383796 I
e cebCap1.NW_016107755v1     812329 1221 -   1771730 I
e calJac3.chr4             30356586 579 + 171630274 I

a score=1730497.000000
s hg38.chr6_GL000254v2_alt  1394386 410 +   4827813 taaata---------aataaataaaaatagaatgagcaaaagatatgaacagtcatttccctaaagaagatatac-aaatagccaataagttcataaaaaag-atgatcgacattattagggaaatgcaatttaaaaccacagtg----------------aaggctgggcatggtggctcacacctgtaatt----ccagcactttgggaggccaaggtgggtggatcgcaaggtcaggagttccagaccagcctggccaacatggtgaaaccccatctctactaaaaatagaaaaaattagctgggcatggtggcaggtacctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagtgagccgagaccacaccactgcactccagcctgggcaacagagcgaga--ct
s panTro5.chr6             30267822 410 + 175400573 taaata---------aataaataaaaatagaatgagcaaaggatatgaacagtcatttctctaaagaagatatac-aaatagccaataagttcataaaaaag-atgattgacattattagggaaatgcaatttaaaaccacagtg----------------aaggctgggcatggtggctcacacctgtaatt----ccagcactttgggaggccaaggtgggtggatcgcaaggtcaggagttccagaccagcctggccaacatggtgaaaccccatctctactaaaaatagaaaaaattagctgggcatggtggcaggtacctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagtgagccgagaccacaccactgcactccagcctgggcaacagagcgaga--ct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30498336 428 + 173848474 taaata---------aataaataaaaatagaatgagcaaaggatatgaacagtcatttctctaaagaagatatacaaaatagccaataagttcataaaaaagaatgattgacattattagggaaatgcaatttaaaaccacagtgnnnnnnnnnnnnnnnnnnnnctgggcatggtggctcacacctgtaatt----ccagcactttgggaggccaaggtgggtggatcgcaaggtcaggagttccagaccagcctggccaacatggtgaaaccccatctctactaaaaatagaaaaaattagctgggcatggtggcaggtacctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagtgagccgagaccacaccactgcactccagcctgggcaacagagcgaga--ct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     204933 409 +   2037526 taaata---------aataaataaaaatagaatgagcaaaggatatgaacagtcatttccctaaagaagatatac-aaatagccaataagttcataaaaaag-atgatcgacattattagggaaatgcaacttaaaaccacagtg----------------aaggccgggcatggtggctcacacctgtaatt----ccagcactttgggaggccaaggtgggtggatcgcaaggtcaggagttccagaccagcctggccaacatggtgaaaccccatctctactaaaaataaaaaaaattagctgggcatggtggcaggtacctgtaatcccagctacttgggaggctgaggcaggacaattgcttgaacctgggaggcagaggttgcagtgagccgagaccacaccactgcactccagcctgggcaacagagcgaga--c-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74877265 410 + 122973662 taaata---------aataaataaaaatagaatgagcaaaggatatgaacagtcatttccctaaagaagatatac-aaatagccaataagttcataaaaaag-atcattgacaatattagggaaatgcaatttaaaaccacagtg----------------aaggccgggcatggtggctcacacctgtaata----ccagcactttgggaggccaaggtgggtggatcgcaaggtcaggagttcgggaccagcctggccaacatggtgaaaccccatctctactaaaaatagaaaaaattagctgggcatggtggcaggcacctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcaatgagctgagaccacgccactgcactccagcctgggcaacagagcgaga--ct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30750481 393 + 172585720 taaata---aaaaaaaaaaaaaagaaatagaatgagcaaaagttaggaacagtcatttccctaaagaagatatac-aaatagccaataagttcacaaaata--atgatcaacagtattagggaaatgcaatttaaaaccacaatg----------------aaggccaggcatggtggctcacgcctgtaattctacccagcacattaggaggccaaggcagatggatcacaaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctac------------------------cgtggtggcatgcacctgtaatcccagctacttgggaggctgaggcaggagaacctcttgaacctgggaggcagaggttgcagtgagccgagaccatgccactgcactccagcctgggcaacagagcgaga----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30045626 393 - 170955103 taaata---aaaaaaaaaaaaaagaaatagaatgagcaaaagttaggaacagtcatttccctaaagaagatatac-aaatagccaataagttcacaaaata--atgatcaacagtattagggaaatgcaatttaaaaccacaatg----------------aaggccaggcatggtggctcacgcctgtaattctacccagcacattaggaggccaaggcagatggatcacaaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctac------------------------cgtggtggcatgcacctgtaatcccagctacttgggaggctgaggcaggagaacctcttgaacctgggaggcagaggttgcagtgagccgagaccatgccactgcactccagcctgggcaacagagcgaga----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     294912 393 +   1495729 taaatg---aaaaaaaaaaaaaagaaatagaatgagcaaaagttaggaacagtcatttccctaaagaagatatac-aaatagccaataagttcacaaaata--atgatcaacagtattagggaaatgcaatttaaaaccacaatg----------------aaggccaggcatggtggctcatgcctgtaattctacccagcacattaggaggccaaggcagatggatcacaaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctac------------------------cgtggtggcatgcacctgtaatcccagctacttgggaggctgaggcaggagaacctcttgaacctgggaggcggaggttgcagtgagccgagaccatgccactgcactccagcctgggcaacagagcgaga----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     391060 391 -    863181 taaatt-----aaaaaaaaaaaagaaatagaatgagcaaaagttaggaacagtcatttccctaaagaagatatac-aaatagccaataagttcacaaaata--atgatcaacagtattagggaaatgcaatttaaaaccacaatg----------------aaggccaggcatggtggctcacgcctgtaattctacccagcactttaggaggccaaggcagatggatcacaaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctac------------------------cgtggtggcatgcacctgtaatcccagctacttgggaggctgaggcaggagaacctcttgaacctgggaggcggaggttgcagtgagccgagaccatgccactgcactccagcctgggcaacagagcgaga----
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     217291 396 -    735854 taaattaaaaaaaaaaaaaaaaagaaatagaatgagcaaaagttatgaacagtcatttccctaaagaagatatac-aaatagccaataagttcacaagata--atgatcaacagtattagggaaatgcaatttaaaaccacaatg----------------aaggccaggcatggtggctcacgcctgtaattctacccagcactttaggaggccaaggcagatggatcacaaggtcaggagttggaaaccagcctggccaacatggtgaaaccccatctctac------------------------cgtggtggcatgcacctgtaatcccagctacttgggaggctgaggcaggagaacctcttgaacctgggaggtggaggttgcagtgagccgagaccatgccactgcactccagcctgggcaacagagcgaga----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     183133 393 -   1829203 taaata-----aaaaataaaaaataaatagaatgagcaaaagttatgaacaatcatttccctaaagaagatatac-aaatagccaataagttcacaaaata--atgatcaacagtattagggaaatgcaatttaaaaccacaatg----------------aaggccaggtatggtggctcacgcctgtaattctacccagcactttaggaggccaaggcagatggatcacaaagtcaggagtttgagaccagcctggccaacatggtgaaaccccatctctac------------------------cgtggtggcaggcacctgtaatctcagctacttgggaggctgaggcaggagaatgtcttgaacctgggaggcggatgttgcagtaagctgagaccgtgccactgcactccagccagggcaacagagcgagact--
i colAng1.NW_012115577v1   C 0 I 14
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           179025 1980 +    515838 I
e otoGar3.GL873550           215659 12540 +  18854210 I
e aotNan1.NW_018496904v1     295085 3938 -    383796 I
e cebCap1.NW_016107755v1     812329 1221 -   1771730 I
e calJac3.chr4             30356586 579 + 171630274 I
e chlSab2.chr17            29545382 3728 -  71996105 I

a score=28392.000000
s hg38.chr6_GL000254v2_alt  1394796 31 +   4827813 ctgtctAAA--acacacacacgcacgcacgcac
s panTro5.chr6             30268232 33 + 175400573 ctgtctAAAacacacacacacgcacgcacgcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30498764 32 + 173848474 ctgtctAAa-cacacacacgcacacgcacacac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     205342 30 +   2037526 ---tcTAAAacacacacacgcacgcgcacacac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74877675 33 + 122973662 ctgtctAAAacacacaaacacacacacagacac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30750874 15 + 172585720 ctgtctaaaacaaaa------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30046019 15 - 170955103 ctgtctaaaacaaaa------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     295305 15 +   1495729 ctgtctaaaacaaaa------------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     391451 15 -    863181 ctgtctaaaacaaaa------------------
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     217687 15 -    735854 ctgtctaaaacaaaa------------------
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           179025 1980 +    515838 I
e otoGar3.GL873550           215659 12540 +  18854210 I
e aotNan1.NW_018496904v1     295085 3938 -    383796 I
e cebCap1.NW_016107755v1     812329 1221 -   1771730 I
e calJac3.chr4             30356586 579 + 171630274 I
e colAng1.NW_012115577v1     183526 14 -   1829203 I
e chlSab2.chr17            29545382 3728 -  71996105 I

a score=11591164.000000
s hg38.chr6_GL000254v2_alt  1394827 2519 +   4827813 aaacacacacacacacacacac------gagataccacttcccagccaaagaatggctagaatcaaaacatcagataataagtattgttaaggatatgcaggaatgagaaccctcagacactgctggcaggaatgtgtaattatgtagtcactttggaaggagtcaggctgtggctcaactgattaaaaatgaagataccatacgactcac-----ccattcttaggtatatgtccaagagaaataaaaatgtgtcacacaaaaatttgtaaatgaacattcatagatgcattatttgtattagccaaaagacagaaacaatccagatgtctataaaccgataaataaacaaatgtgatacatctatggaatacagtattatttggccataaaaagcaatgaaatactgatacatgctataatataaatgacacttggaaacattaagtgaaagaaactagtcacaaaagaccatatatgattatatttacatatgaattttccaaaataggcaaatccatacaggtaggacatagatt------------------------aactcttgcttagggtttggggtgatggggaagggggaataagagagtaatagctatagggcatggggtttctttttcaggcgatgataatattctaaaattgaatgcagtgatggttgcacatatttgggaatatactttaaaactttgattgcatacATACTTTATTTTTTTCCAGATTTATTGAAGTATAATTGACAAAT-------AAAAATTGTACAGTGTGACtttttatttgtacataatatttgcacatatttatggggtacatgtgatattttgatacacacatagtatctaataatgaagttagggtacataggatatccgtcacctcaagcatttatttctctgtgttgggaacattacaag-----tcttctagctattttgaaatacacaatatattgttgttaattatagtcaccctactgtgctatcaaacactagaacttattccttctatctgactgtacgttcgtacccattaacctacctctcttcatcaccccc-----------ctcacacacccacaaacacacacacacacacacacacacacacacacccttcccagcctctggatactatctttctgctgtttacctcgattagatcaaccttttaaagctcgcaca--tgagtgagaac-atgcaatatttgtctttctgtgcctggcttatttcatttaatatcagaacctccagttctgtccatgttagtggaaatgacaagattccattctttttatagctaaatagtattccattgtgtatatatgccgtatctttttaatccattcatccattgatggacagttaggttgattccctgtctttgctattgtaaatagtaccacagtaaacatgggggtgccagtatccctttgatgtatcgatttccttacctttggataaatacccagtggtggtattgctggatcacacagatctattttcagttttctaagaaatctccatactgttttccatagtggctgtactaattcaccttcccaccaaccgtgtgtaagagtttgtctttatatcctagctaccatttttgtctttttaataatagctattctagctagggtaagatgatatattattgtggtttgctttaaatttccctgataattagtgatgttgagcatctttttcacatacatgttggccatttgtatttc------ttaagaaatttctattcagatcccttgaccatttttaagggga----------ttttttttttttttttttactgttgaattgtgttccttgtacactctggatattagtcccctgttggataatttgaaaatattgttcccatctacagttggtctcttcactctgttgttttctttgctgtgcagatttttagtttaatatagtcccacctgccta-tttttt----------gttgttgttgcctatgcttttgatgtcttaaccataaaatctttgcctagaccaatgttcttgagcatttcccctatattctcttttagtagtttcatagtttcggatctatcatttaagcctttaatccatttttggttgattttttaatatggtaagagatatgagcctagctgcaatcttctgcatatggatatccagttttcccagcaccatttattgaaaagggtgtcctttcttggtgcctttgttgaaagtcagttggctg-taagtatatgaaattatttctgggttctctattctttccattggtctatgtgtctg-ttttaggccggtaccatgatgatttggtttctactataacAGTTACAAAGCTATTACTATAGC-------------------------------------------------------------------TTAACTATTGGATGGGGCTCTTTTGTGGTTCCATATGAA----tttt----ttttatttttgagatagggtctcactttgtcacccaggctgcaacacagtggcgcaataccagctcactgcagccttaacctcctgaggttcaagcgatcctcctgcctcagccccctaagtagctgggactacatgcacatgccaccacacccagctaatttttgtaatttttgtaga
s panTro5.chr6             30268265 2503 + 175400573 --acacacacacacacacacac------gagataccacttcccagccaaagaatggctagaatcaaaacatcagataataagtattgttaaggatatgcaggaatgagaaccctcagacactgctggcaggaatgtgtaattatgtagtcactttggaaggagtcaggctgtggctcaactgattaaaaatggagataccatacgactcac-----ccattcttaggtatatgtccaagagaaataaaaatgtgtcacacaaaaatttgtaaatgaacattcatagacgcattatttgtattagccaaaagacagaaacaatccagatgtctataaactgataaataaacaaatgtgatacatctatggaatacagtattatttggccataaaaagcaatgaaatactgata-atgctataatataaatgacgcttggaaacattaagtgaaagaaactagtcacaaaagaccatatatgattatatttacatatgaattttccaaaataggcaaatccatacaggtagaacatagatt------------------------aactcttgcttagggtttggggtgatggggaagggggaataagagagtaatagctatagggcatggggtttctttttcaggcgatgataatattctaaaattgaatgcagtgatggttgcacatatttgggaatatactttaaaactttgattgtatacATACTTTA-TTTTTTCCAGATTTATTGAAGTATAATTGACAAAT-------AAAAATTGTACAGTGTGACtttttatttgtacataatatttgcacatatttatggggtacatgtgatattttgatacacacatagtatctaataatgaagttagggtacataggatatccatcacctcaagcatttatttctctgtgttgggaacattacaac-----tcttctagctattttgaaatacacaatatattgttgttaattatagtcaccctactgtgctatcaaacactagaacttattccttctatctgactgtacgttcgtacccattaacctacctctcttcatcaccc-------------------cacacacacacacacacacacacacacacacacacacacacccttcccagcctctggatactatctttctgctgtttacctcgattagatcaaccttttaaagctcgcaca--tgagtgagaac-atgcaatatttgtctttctgtgcctggcttatttcatttaatatcagaacctccagttctgtccatgttagtggaaatgacaagattccattctttttatagctaaatagcattccattgtgtatatatgccatatctttttaatccattcatccattgatggacagttaggttgattccctgtctttgctattgtaaatagtaccacagtaaacatgggggtgccagtatccctttgatgtatcgatttccttacctttggataaatacccagtggtggtattgctggatcacacagatctattttcagttttctaagaaatctccatactgttttccatagtggctgtactaattcaccttcccaccaaccgtgtataagagtttgtctttatatcctagctaccatttttgtctttttaataatagctattctagctagggtaagatgatatcttattgtggtttgctttaaatttccctgataattagtgatgttgagcatctttttcacatacatgttggccatttgtatttc------ttaagaaatttctattcagatcccttgaccatttttaagggga--------------ttttttttttttttactgttgaattgtgttccttgtacactctggatattagtcccctgttggataatttgaaaatattgttcccatctacagttggtctcttcactctgttgttttctttgctgtgcagatttttagtttaatatagtcccacctgctta-cttttt----------tttgttgttgcctatgcttttgatgtcttaaccataaaatctttgcctagaccaatgttcttgagcatttcccctatattctcttttagtagtttcatagtttcggatctatcatttaagcctttaatccatttttggttgattttttaatatggtaagagatatgagcctagctgcaatcttctgcatatggatatccagttttcccagcaccatttattgaaaagggtgtcctttcttggtgcctttgttgaaagtcagttggctg-taagtacatgaaattatttctgggttctctattctttccattggtctatgtgtctg-ttttaggccaataccatgatgacttggtttctactataacAGTTACAAAGCTATTACTATAGC-------------------------------------------------------------------TTAACTATTGGATGGGGCTCTTTTGTGGTTCCATATGAA----tttt----ttttatttttgagatagggtctcactttgtcacccaggctgcaacacagtggcgcaataccagctcactgcagccttaacctcctgaagttcaagcgatcctcctgcctcagccccctaagtagctgggactacatgcacatgccaccacacccagctaatttttgtaatttttgtaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30498796 2523 + 173848474 --acacacacacacacacacaca---atgagataccacttcccagccaaagaatggctagaatcaaaacatcagataataagtattgttaaggatatgcaggaatgagaaccctcagacactgctggcaggaatgtgtaattatgtagtcactttggaaggagtcaggctgtggctcaactgattaaaaatggagataccatatgactcac-----ccattcttaggtatatgtccaagagaaataaaaatgtgtcacacaaaaatttgtaaatgaacattcatagacgcattatttgtattagccaaaagacagaaacaatccagatgtctataaactgataaataaacaaatgtgatacatctatggaatacagtattatttggccataaaaagcaatgaaatactgatacatgctataatataaatgacgcttggaaacattaagtgaaagaaactagtcacaaaagaccatatatgattatatttacatatgaattttccaaaataggcaaatccatacaggtagaacatagatt------------------------aactcttgcttagggtttggggtgatggggaagggggaataagagagtaatagctatagggcatggggtttctttttcaggcgatgataatattctaaaattgaatgcagtgatggttgcacatatttgggaatatactttaaaactttgattgtatacATACTTTA-Ttttttccagatttattgaagtataattgacaaat-------aaaaattgtacagtgtgactttttatttgtacataatatttgcacatatttatggggtacatgtgatattttgatacacacatagtatctaataatgaagttagggtacataggatatccatcacctcaagcatttatttctctgtgttgggaacattacaac-----tcttctagctattttgaaatacacaatatattgttgttaattatagtcaccctactgtgctatcaaacactagaacttattccttctatctgactgtacgttcgtacccattaacctacctctcttcatcaccccc-----------------ctcacacacacacacacacacacacacacacacacacacacccttcccagcctctggatactatctttctgctgtttacctcgattagatcaaccttttaaagctcgcaca--tgagtgagaac-atgcaatatttgtctttctgtgcctggcttatttcatttaatatcagaacctccagttctgtccatgttagtggaaatgacaagattccattctttttatagctaaatagtattccattgtgtatatatgccatatctttttaatccattcatccattgatggacagttaggttgattccctgtctttgctattgtaaatagtaccacagtaaacatgggggtgccagtatccctttgatgtatcgatttccttacctttggataaatatccagtggtggtattgctggatcacacagatctattttcagttttttaagaaatctccatactgttttccatagtggctgtactaattcaccttcccaccaaccgtgtgtaagagtttgtctttatatcctagctaccatttttgtctttttaataatagctattctagctagggtaagatggtatcttattgtggtttgctttaaatttccctgataattagtgatgttgagcatctttttcacatacatgttggccatttgtatttc------ttaagaaatttctattcagatcccttgaccatttttaaggggtatttttttttttttttttttttttttttactgttgaattgtgttccttgtacactctggatattagtcccctgttggataatttgaaaatattgttcccatctacagttggtctcttcactctgttgttttctttgctgtgcagatttttagtttaatatagtcccacctgctta-cttttt----------tttgttgttgcctatgcttttgatgtcttaaccataaaatctttgcctagaccaatgttcttgagcatttcccctatattctcttttagtagtttcatagtttcggatctatcatttaagcctttaatccatttttggttgattttttaatatggtaagagatatgagcctagctgcaatcttctgcatatggatatccagttttcccagcaccatttattgaaaagggtgtcctttcttggtgcctttgttgaaagtcagttggctg-taagtacatgaaattatttctgggttctctattctttccattggtctatgtgtctg-ttttaggccaataccatgatgatttggtttctactataacAGTTACAAAGCTATTACTATAGC-------------------------------------------------------------------TTAACTATTGGATGGGGCTCTTTTGTGGTTCCATATGAA----tttt----ttttatttttgagatagggtctcactttgtcacccaggctgcaacacagtggcgcaataccagctcactgcagccttaacctcctgaggttcaagcgatcctcctgcctcagccccctaagtagctgggactacatgcacatgccaccacacccagctaatttttgtaatttttgtaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     205372 2508 +   2037526 --acacacacacacacacacacac--acgagataccacttcccagccatagaatggctagaatcaaaacatcagataataagtattgttaaggatatgcaggaatgagaaccctcaaacactgctggcaggaatgtgtaattatgtagtcactttggaaggagtcaggctgtggctcaactgattaaaaatggagataccatacgactcac-----ccattcttaggtatatgtccaagagaaataaaaatgtgtcacacaaaaatctgtaaacgaacattcatagacgcattatttgtattagccaaaagacagaaacaatccagatgtctataaactgataaataaacaaatgtgatacatctgtggaatacagtattatttggccataaaaagcaatgaaatactgatacatgctataatataaatgacgcttggaaacattaagtgaaagaaactagtcacaaaagaccatatatgattatatttacatatgaattttccaaaataggcaaatccatacaggtagaacatagatt------------------------aactcttgcttagggtttggggtgatggggaagggggaataagagagtaatagctaaagggcatggggtttctttttcaggcgatgataatattctaaaattgaatgcagtgatggttgcacatatttgggaatatactttaaaactttgattgcatacATACTTTATTTTTTTCCAGATTTATTGAAGTATAATTGACAAAT--------AAAATTTTACAGTGTGACtttttatttgtacataatatttgcacatatttat-gggtacatgtgatattttgatacacacatagtatctaataatgaagttagggtacataggatatccatcacctcaagcatttatttctctgtgttgggaacattacaag-----tcttctagctattttgaaatacacaatatattgttgttaattatagtcaccctactgtgctatcaaacgctagaacttattccttctatctgactgtacgtttgtacccattaacctacctctcttcatcaccccc---------------------------ctcacacacccacaaacacacacacacacacccttcccagcctctggatactatctttctgctgtttacctagattagatcaaccttttaaagctcgcaca--tgagtgagaac-atgcaatatttgtctttctgtgcctggcttatttcatttaatatcagaacctccagttctgtccatgttagtggaaatgacaagattccattc-ttttatagctaaatagtattccattgtgtatatatgccatatctttttaatccattcatccattgatggacagttaggttgattctctgtctttgctattgtaaatagtaccacagtaaacatgggggtgccagtatccctttgatatatcgatttcc-tacctttggataaatacccagtggtggtattgctggatcacacagatctattttcagttttctaagaaatctccatactattttccatagtggctgtactaattcaccttcccaccaactgtgtgtaagagtttgtctttatatcctagctaccatttttgtctttttaataatagctattctagctagggtaagatgatatcttattgtggtttgctttaaatttccctgataattagtgatgttgagcatctttttcacatacatgttggccatttgtatttc-ttcttttaagaaatttctattcagatcccttgaccatttttaagggga---------tttttttttttttttttttactgttgaattgtgttccttgtacactctggatattagtcccctgttggataatttgaaaatattgttcccatctacagttggtctcttcgctctgttgttttctttgctgtgcagatttttagtttaatatagtcccacctgctta-cttttt----------gttgttgttgcctatgcttttgatgtcttaaccataaaatctttgcctagaccaatgttcttgagcatttcccctatattctcttttagtagtttcatagtttcggatctatcatttaagcctttaatccatttttggttgattttttaatatggtaagagatatgagcctagctgcaatcttctgcatatggatatccagttttcccagtaccatttattgaaaagggtgtcctttcttggtgcctttgttgaaagtcagttggctg-taagtacatgaaattatttctgggttctctattctttccattggtctacgtgtctgtttttaggccaataccatgatgatttggtttctactataacAGTTACAAAGCTATTACTATAGC-------------------------------------------------------------------TTAACTATTGGATGGGGCTCTTTTGTGGTTCCATATGAA----tttt----ttttatttttgagatagggtctcactttgtcacccaggctgcaacacagtggcgcaataccagctcactgcagccttaacctcctgaggttcaagtgatcctcctgcctcagccccctaagtagctgggactacatgcacacgccaccacacccagctaatttttgtaatttttgtaga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74877708 2519 + 122973662 --acacacacagacacacacacacaaatgagataccacttcccagccacagaatggctagaatcaaaacatcagataataagtattgttaaggatatgcaggaatgagaaccctcagacactgctggcaggaatgtgtaattatgttgtcactttggaaggagtcaggctgtggctcaactgattaaaaatggtgataccacaggagtcac-----ccattcttaggtatatgcccaagagaaataaaaacgtgtcacacaaaaatttgcaaataaacattcatagacgcattatttgtattagccaaaagac--aaacaatccagatgtctataaactgataaataaacaaatgtgatacatctatggaatgtagtattatttggccataaaaagcaatgaaatactgatacatgctataatataaatgacacttggaaatattaggtgaaagaaactagtcacaaaagaccatatatgattatatttacatatgaattttccaaaataggcaaatccatacaggtagaacatagatt------------------------aactcttgcttagggtttggggtgatggagaagggggaataagagagtaatagctatagggtatggggtttctttttcaggtgatgataatattctaaaattgaatgcagtgatggttgcacatatttgggaatatactttaaaactttgattgcatacATACT----TTTTTTCCAGATTTATTGAAGTATAATTGACAAGT-------AAAAATTATACAGTGTGACtttttatttgtac---atatttgcacatatttatggggtacctgtgatattttgatatacacatagtatctaataatgaagttagggtacataggatatccatcacctcaagcatttatttctc-atgttgggaacattacaag-----tcttctagctattttgaaatacacaatatattgttgttaatgatagtcaccctactgtgctatcaaacactagaacttattccttctatctgactgtacgtttgtacccattaacctacctctcatcatccccctcacacatacacacacacacacacacacacacacacacacacacacacacacacacacacccttcccagcctctggatactatctttctgctgtttacctcgattagatcaactttttaaagctcgcaca------tgagaac-atgcaatatttgtttttctgtgcctggcttatttcatttaatatcagaacctccagttctgtccatgttagtggaaatgaaaagattccgttctttttatagctaaatagtattccattgtgtatatatgccacatctttttaatccattcatccattgatggacagttaggttgattccctatctttgctattataaatagtaccacagtaaacatgggggttccagtatccttttgatatatcgatttccttacctttggataaatacccagtggtggtattgctggatcacatagatctattttcagttttctaagaaatctccatactgttctccatagtggctgtactaattcaccttcccaccaaccgtgtgtaagagtttgtctttatatcctagctaccatttttgtctttttaataatagctattctagctagggtaagatgatatcttattgtggttttctttaaatttccctgataattagtgatgttgagcatctttttcacatacatgttggccattcgtatttc-ttcttttaagaaatttctattcagatcccttgaccatttttaagggtt----ttttttgtttttttttttttttttactgttgaattgtgttccttgtacactctggatattagccccctgttggataatttgaaaatatttttcccatctacagttggtctcttcactctgttgctttctttgctgtgcagatttttagtttaatatagtcccacctgccta-tttttt-----------ttgtcgttgcctatgcttttgatgtcttaaccataaaatctttgcctagaccaatgttctcgagcatttcccctatattctcttttagtagttcc--agttttgtatctatcatttaagcctttaatccatttttggttgattttttaatatggtaagagatacgagcctagctgcattcttctgcatatggatatccagttttcccagaaccatttattgaaaagggtgtcctttcttggtgcctttattgaaagtcagttggctg-taagtacatgaaattatttctgggttctctattctttccattggtctatgtgtctg-ttttaggccagtaccatgatgatttggtttctactataATAGTTACAAAGCTATTACTATAGC-------------------------------------------------------------------TTTACTATAGGATGGAGCTTTTTTGTGGTTCCATATGAA----tttt----ttttatttttgagatagggtctcactttgtcacccaggctggaacacagtggcgcaataccagctcactgcagccttaacctcctgaggttcaagcgatcctcctacctcagccccctaagtagctgggactacatgcacatgccaccatacccagc---------taatttttgtaGa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30750889 2604 + 172585720 ----aaaatcacacacacacaca---atgagataacacttcccagtcatagaatggctagaatcaaaacatcagataataagtgttgttaaagatatgcaggaatgagaaccctcagacattgctggcaggaatgtgtaattacgtagtcccttcggaaggagtcaggctgtggctcaactgattaaaaatggagataccaaaggactcaccaattccattcctaggtatatgcccaatagaaataaaaatgtgtcacacaaaaatttgtaaataaacattcatagatgcattatttttattagccaaaagacagaaacaatccagatgtctataaactgataaataaaaaaatgtgatacatccatggaatgtag-------------gaaaaagcaatgaagtactgatacatgctataatgtaaatgatgcttggaaacattaagtgaaagaaattaatcacaaaagaccatatatgattatatttacatatgaattttccaaaataggcaaatccatacagatacaatatagattaattcttgcttagggtttggggtgaattcttgcttagggtttggggtgatgggcaagcagggataagagagtaatagctacagagcatggggtttctttttcaggtgatgataatattctaaaattcaatgtagtaatagttgcacatactggggaatatactttaaaactttgattgcatacat--t----ttTTTTCCAGATTTATTGAGGTATAATTGACAAAAATTGTAAATAAAACATAGAGTGTGACtttttatttgtacataatatttgcacatatttatggggtacatgtgatattttgatacatgcatagtatctaataatgaagttagggt--ataggatatccattacctcaagcatttatttctctgtgttgggaacatttcaagtcttctcttctagttattttgaaatacacaatatattgttgttaattacagtcaccctactgtgctaccaaacactagaacttattcct----tctgactgtacgtttgtacccattaacctacctctctccaacactgcc-----------------c---------cctgcgccccaccccacccccacacacacacccttcccagcctctggatactatctttctgctctttacctcgattagatcaacttttttaggctcgcacatgtgagtgagaac-atgcaatatttgtctttctgtgcctggcttatttcactcaatatcagaacctccagttctgtccatgttagtggaaatgacaagattctgttctttttaaagctaaatagtattccattgtgtatatatgccacatctttttaatctattcatccattgatggagagttaggttgattccctatctttgctattgtaaatagtaccatagtaaacatgggagtgccagtatccctttgatacatcaatttccttacctttggataaatacccagtggtggtattgctggatcacatatatctattttcagttttctgagaaatctccatactgttttccatagtggctgtactaacttaccctcccaccaaccgtgtgcaagagtttgtctttacatcctggctaccatttttgtctttttaataatagctattctagctagggtaagatgatatctcattgtggtttgctttaaatttccctaataattagtgatgttgagcatttttttcacacacatgttggccatttgtgtgtctttttttaaagaaatttctattcagatcccttgaccatttttaagagga--------------ttatttatttttttactgttgaattgtgttccttgtacactctggatattagttccctgttggataatttgaaaatttttttcccatctacagttggtctcttcactctgttgttttctttgcggtgcagatttttagtttaatatagtcccacttgccta-tttttttgttgttgctgttgttgttgcctatgcttttgatgtcttaaccataaaatctttgcctagatcaatgttctcgagcatctcccctatgttcttttttagtagtttta-agttttgggtctatcatttaagcttttaatccatttttggttgattttttaatatggtaagagatacaagcctagctgcattcttctgcatatggatatcctgttttcccagtaccatttattgaaaagggtgtcctttcttggtgcctttgttgaacgtcagttggctgttaagtacatggaattatttctgggttctctattctttccattggtctatgtgtctg-ttttatgccagtaccatgctgacttggttcctactataatagttacaaagctattactatagctgtgtaatatattttgaagagaagtaatgtgatgcttccagctttgttgtttctgctcagaattgttttagctattggatggagctcttttgtggttccatatgaa----tttttttcttttatttttgagatagggtctcactttgtcacccaggctggaacacagtggagcaataccagctcactgcagccttaatctcctgaggttcaagcgatcctcctgcctcggccccctaagtagctgggactacatgcacatgccaccacacccagctaatttttgtaatttttgtaga
i rheMac8.chr4             C 0 I 1106
s macFas5.chr4             30046034 2603 - 170955103 ----aaaatcacacacacacaca---atgagataacacttcccagtcatagaatggctagaatcaaaacatcagataataagtgttgttaaagatatgcaggaatgagaaccctcagacattgctggcaggaatgtgtaattacgtagtcccttcggaaggagtcaggctgtggctcaactgattaaaaatggagataccaaaggactcaccaattccattcctaggtatatgcccaatagaaataaaaatgtgtcacacaaaaatttgtaaataaacattcatagatgcattatttttattagccaaaagacagaaacaatccagatgtctataaactgataaataaaaaaatgtgatacatccatggaatgtag-------------gaaaaagcaatgaagtactgatacatgctataatgtaaatgatgcttggaaacattaagtgaaagaaattaatcacaaaaggccatatatgattatatttacatatgaattttccaaaataggcaaatccatacagatacaatatagattaattcttgcttagggtttggggtgaattcttgcttagggtttggggtgatgggcaagcagggataagagagtaatagctacagagcatggggtttctttttcaggtgatgataatattctaaaattcaatgtagtaatagttgcacatactggggaatatactttaaaactttgattgcatacat--t----ttttttccagatttattgaggtataattgacaaaaattgtaaataAAACATAGAGTGTGACtttttatttgtacataatatttgcacatatttatggggtacatgtgatattttgatacatgcatagtatctaataatgaagttagggt--ataggatatccattacctcaagcatttatttctctgtgttgggaacatttcaagtcttctcttctagttattttgaaatacacaatatattgttgttaattacagtcaccctactgtgctaccaaacactagaacttattcct----tctgactgtacgtttgtacccattaacctacctctctccaacactgcc-----------------c---------cctgcgccccaccccacccccacacacacacccttcccagcctctggatactatctttctgctctttacctcgattagatcaacttttttaggctcgcacatgtgagtgagaac-atgcaatatttgtctttctgtgcctggcttatttcactcaatatcagaacctccagttctgtccatgttagtggaaatgacaagattctgttctttttaaagctaaatagtattccattgtgtatatatgccacatctttttaatctattcatccattgatggagagttaggttgattccctatctttgctattgtaaatagtaccatagtaaacatgggagtgccagtatccctttgatacatcaatttccttacctttggataaatacccagtggtggtattgctggatcacatatatctattttcagttttctgagaaatctccatactgttttccatagtggctgtactaacttaccctcccaccaaccgtgtgcaagagtttgtctttacatcctggctaccatttttgtctttttaataatagctattctagctagggtaagatgatatctcattgtggtttgctttaaatttccctaataattagtgatgttgagcatttttttcacacacatgttggccatttgtgtgtctttttttaaagaaatttctattcagatcccttgaccatttttaagagga--------------ttatttatttttttactgttgaattgtgttccttgtacactctggatattagttccctgttggataatttgaaaatttttttcccatctacagttggtctcttcactctgttgttttctttgcggtgcagatttttagtttaatatagtcccacctgccta-tttttttgttgttgctgttgttgttgcctatgcttttgatgtcttaaccataaaatctttgcctagatcaatgttctcgagcatctcccctatgttcttttttagtagtttta-agttttgggtctatcatttaagcttttaatccatttttggttgattttttaatatggtaagagatacaagcctagctgcattcttctgcatatggatatcctgttttcccagcaccatttattgaaaagggtgtcctttcttggtgcctttgttgaaagtcagttggctg-taagtacatggaattatttctgggttctctattctttccattggtctatgtgtctg-ttttatgccagtaccatgctgacttggttcctactataatagttacaaagctattactatagctgtgtaatatattttgaagagaagtaatgtgatgcttccagctttgttgtttctgctcagaattgttttagctattggatggagctcttttgtggttccatatgaa----tttttttcttttatttttgagatagggtctcactttgtcacccaggctggaacacagtggagcaataccagctcactgcagccttaatctcctgaggttcaagcgatcctcctgcctcggccccctaagtagctgggactacatgcacatgccaccacacccagctaatttttgtaatttttgtaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     295320 2603 +   1495729 ----aaaatcacacacacacaca---atgagataacacttcccagtcatagaatggctagaatcaaaacatcagataataagtgttgttaaagatatgcaggaatgagaaccctcagacattgctggcaggaatgtgtaattacgtagtcccttcggaaggagtcaggctgtggctcaactgattaaaaatggagataccaaaggactcaccaattccattcctaggtatatgcccaatagaaataaaaatgtgtcacacaaaaatttgtaaataaacattcatagatgcattatttttattagccaaaagacagaaacaatccagatgtctataaactgataaataaaaaaatgtgatacatccatggaatgtag-------------gaaaaagcaatgaagtactgatacatgctataatgtaaatgatgcttggaaacattaagtgaaagaaattaatcacaaaagaccatatatgattatatttacatatgaattttccaaaataggcaaatccatacagatacaatatagattaattcttgcttagggtttggggtgaattcttgcttagggtttggggtgatgggcaagcagggataagagagtaatagctacagagcatggggtttctttttcaggtgatgataatattctaaaattcaatgtagtaatagtttcacatactggggaatatactttaaaactttgattgcatacat--t----ttTTTTCCAGATTTATTGAGGTATAATTGACAAAAATTGTAAATAAAACATAGAGTGTGACtttttatttgtacataatatttgcacatatttatggggtacatgtgatattttgatacatgcatagtatctaataatgaagttagggt--ataggatatccattacctcaagcatttatttctctgtgttgggaacatttcaagtcttctcttctagttattttgaaatacacaatatattgttgttaattacagtcaccctactgtgctaccaaacactagaacttattcct----tctgactgtacgtttgtacccattaacctacctctctccaacactgcc-----------------c---------cctgcgccccaccccacccccacacacacacccttcccagcctctggatactatctttctgctctttacctcgattagatcaacttttttaggctcgcacatgtgagtgagaac-atgcaatatttgtctttctgtgcctggcttatttcactcaatatcagaacctccagttctgtccatgttagtggaaatgacaagattctgttctttttaaagctaaatagtattccattgtgtatatatgccacatctttttaatctattcatccattgatggagagttaggttgattccctatctttgctattgtaaatagtaccatagtaaacatgggagtgccagtatccctttgatacatcaatttccttacctttggataaatacccagtggtggtattgctggatcacatatatctattttcagttttctgagaaatctccatactgttttccatagtggctgtactaacttaccctcccaccaaccatgtgcaagagtttgtctttacatcctggctaccatttttgtctttttaataatagctattctagctagggtaagatgatatctcattgtggtttgctttaaatttccctaataattagtgatgttgagcatttttttcacacacatgttggccatttgtgtgtctttttttaaagaaatttctattcagatcccttgaccatttttaagggga--------------ttatttatttttttactgttggattgtgttccttgtacactctggatattagttccctgttggataatttgaaaatttttttcccatctacagttggtctcttcactctgttgttttctttgcggtgcagatttttagtttaatatagtcccacctgccta-tttttttgttgttgctgttgttgttgcctatgcttttgatgtcttaaccataaaatctttgcctagatcaatgttctcgagcatctcccctctgttcttttttagtagtttta-agttttgggtctatcatttaagcttttaatccatttttggttgattttttaatatggtaagagatacaagcctagctgcattcttctgcatatggatatcctgttttcccagcaccatttattgaaaagggtgtcctttcttggtgcctttgttgaaagtcagttggctg-taagtacatggaattatttctgggttctctattctttccattggtctatgtgtctg-ttttatgccagtaccatgctgacttggttcctactataatagttacaaagctattactatagctgtgtaatatattttgaagagaagtaatgtgatgcttccagctttgttgtttctgctcagaattgttttagctattggatggagctcttttgtggttccatatgaa----tttttttcttttatttttgagatagggtctcactttgtcacccaggctggaacacagtggagcaataccagctcactgcagccttaatctcctgaggttcaagcgatcctcctgcctcggccccctaagtagctgggactacatgcacatgccaccacacccagctaatttttgtaatttttgtaga
i macNem1.NW_012012100v1   C 0 I 1101
s cerAty1.NW_012002535v1     391466 2597 -    863181 ----aaaatcacacacacacaca---atgagataacacttcccagtcatagaatggctagaatcaaaacatcagataataagtgttgttaaagatatgcaggaatgagaaccctcagacattgctggcaggaatgtgtaattacgtagtcccttcggaaggagtcaggctgtggctcaactgattaaaaatggagataccaaaggactcaccaattccattcctaggtatatgcccaatagaaataaaaatgtgtcacacaaaaatttgtaaataaacattcatagacgcattatttgtattagccaaaagacagaaacaatccagatgtctataaactgataaataaaaaaatgtgatacatccatggaatgtag-------------gaaaaagcaatgaagtactgatatatgctataatgtaaatgatccttggaaacattaagtgaaagaaattaatcacaaaagaccatatatgattatatttacatatgaattttccaaaataggcaaatccatacagatacaatatagattaattcttgcttagggtttggggtgaattcttgcttagggtttggggtgatgggcaagcggggataagagaggaatagctacagagcatggggtttctttttcaggtgatgataatattctaaaattgaatgtagtaacagttgcacatattggggaatatactttaaaactttgattgcataca---t----tttTTTCCAGATTTATTGAGGTATAATTGACAAAAATTGTAAATAAAGCATAGAGTGTGACtttttatttgtacataatatttgcacatatttatggggtacatgtgatattttgatacacgcatagtatctaataatgaagttagggt--ataggatatccattacctcaagcatttatttctctgtgttgggaacatttcaagtcttctcttctagttattttgaaatacacaatatattgctgttaactacagtcaccctactgtgctaccaaacactagaacttattcct----tctgact----gtttgtacccattaacctacctctctccaacactgcc-----------------c---------cctgcgccccaccccacctccacacacacacccttcccagcctctggatactatctttctgctctttacctcgattagatcaacttttttaggctcgcacatgtgagtgagaac-atgcaatatttgtctttctgtgcctggcttatttcactcaatatcagaacctccagttctgtccatgttagtggaaatgacaagattctgttctttttaaagctaaatagtattccattgtgtatatatgccacatctttttaatctattcatcca-tgatggagagttaggttgattccctatctttgctattgtaaatagtaccatagtaaacataggagtgccagtatccctttgatacatcaatttccttacctttggataaatacccagtggtggtattgctggatcacatatatctattttcagttttctgagaaatctccatactgttttccatagtggctgtactaacttaccctcccaccaaccgtgtgcaagagtttgtctttacatcctggttaccatttttgtctttttaataatagctattctagctagggtaagatgatatctcattgtggtttgctttaaatttccctaataattagtgatgttgagcatttttttcacacacatgttggccatttgtgtgtctttttttaaagaaatttctattcagatcccttgaccatttttaagggga--------------ttatttatttttttactgttggattgtgttccttgtacactctggatattagttccctgttggataatttgaaaatttttttcccatctacagttggtctcttcactctgttgttttctttgcggtgcagatttttagtttaatatagtcccacctgccta-tttttttgttgttgctgttgttgttgcctatgcttttgatgtcttaaccataaaatctttgcctagatcaatgttctcgagcatctcccctatgttcttttttagtagtttta-agttttgggtctatcatttaagcttttaatccatttttggttgattttttaatatggtaagagatacaagcctagctgtattcttctgcatatggatatcctgttttcccagcaccatttattgaaaagggtgtcctttcttggtgcctttgttgaaagtcagttggctg-taagtacatggaattatttctgggttctctattctttccattggtctatgtgtctg-ttttatgccagtaccatgctgacttggttcctactataatagttacaaagctattactatagctgtgtaatatattttgaagagaagtaatgtgatgcttccagctttgttgtttctgctcagaattgttttagctattggatggagctcttttgtggttccatatgaa----tttttttcttttatttttgagatagggtctcactttgtcacccaggctggaacacagtggagcaataccagctcactgcagccttaatctcctgaggttcaagcgatcctcctgcctcggccccctaagtagctgggactacatgcacatgccaccacacccagctaatttttgtaatttttgtaga
i cerAty1.NW_012002535v1   C 0 I 1141
s manLeu1.NW_012107142v1     217702 2598 -    735854 ----aaaatcacacacacacaca---atgagataacacttcccagtcatagaatggctagaatcaaaacatcagataataagtgttgttaaagatatgcaggaatgagaaccctcagacattgctggcaggaatgtgtaattacgtagtcccttcggaaggagtcaggctgtggctcaactgattaaaaatggagataccaaaggaccca-caattccattcctaggtatatgcccaatagaaataaaaatgtgtcacacaaaaatttgtaaataaacattcatagacgcgttatttgtattagccaaaagacagaaacaatccagatgtctataaactgataaataaaaaaatgtgatacatccatggaatgtag-------------gaaaaagcaatgaagtactgatacatgctataatgtaaatgatgcttggaaacattaagtgaaagaaattaatcaccaaagaccatatatgattatatttacatatgaattttccaaaataggcaaatccatacagatacaatatagattaattcttgcttagggtttggggtgaattcttgcttagggtttggggtgatgggcaagcagggataagagagtaatagctacagagcatggggtttctttttcaggtgatgataatattctaaaattgaatgtagtaatagttgcacatattggggaatatactttaaaactttgattgcatacat--t----ttttttccagatttattgaggtataattgacaaaaattgtaaataAAGCATAGA--GTGACtttttatttgtacataatatttgcacatatttatggggtacatgtgatattttgatacacgcatagtatctaataatgaagttagggt--ataggatatccattacctcaagcatttatttctctgtgttgggaacatttcaagtcttctcttctagttattttgaaatacacaatatattgctgttaattacagtcaccctactgtgctaccaaacactagaacttattcct----tctgattgtacgtttgtacccattaacctacctctctccaacactgcc-----------------c---------cc-gccccccaccccactcccacacacacacccttcccagcctctggatactatctttctgctctttacctcgattagatcaacttttttaggctcgcacatgtgagtgagaac-atgcaatatttgtctttctgtgcctggcttatttcactcaatatcagaacctccagttctgtccatgttagtggaaatgacaagattctgttctttttaaagctaaatagtattccattgtgtatatatgccacatctttttaatctattcatccattgatggagagttaggttgattccctatctttgctattgtaaatagtaccatagtaaacatgggagtgccagtatccctttgatacatcaatttccttacctttggataaatacccagtggtggtattgctggatcacatatatctattttcagttttctgagaaatctccatactgttttccatagtggctgtactaacttaccttcccagcaaccgtgtgcaagagtttgtctttacatcctggctaccatttttgtctttttaataatagctattctagctagggtaagatgatatctcattgtggtttgctttaaatttccctaataattagtgatgctgagcatttttttcacacacatgttggccatttgtgtgtcttttttaaaagaaatttctattcagatcccttgaccatttttaagggga--------------ttatttatttttttactgttgaattgtgttccttgtacactctggatattagttccctgttggataatttgaaaatttttttcccatctacagttggtctcttcactctgttgttttctttgcggtgcagatttttagtttaatatagtcccacctgccta-tttttttgttgttgctgttgttgttgcctatgcttttgatgtcttaaccataaaatctttgcctagatcaatgttctcgagcatctcccctatgttcttttttagtagtttta-agttttgggtctatcatttaagcttttaatccatttttggttgattttttaatatggtaagagatacaagcctagctgcattcttctgcatatggatatcctgttttcccagcaccatttattgaaaagggtgtcctttcttggtgcctttgttgaaagtcagttggctg-taagtacatggaattatttctgggttctctattctttccattggtctatgtgtctg-tttcatgccagtaccatgctgacttggttcctactataatagttacaaagctattactacagctgtgtaatatattttgaagagcagtaatgtgatgcttccagttttgttgtttctgctcagaattgttttagctattggatggagctcttttgtggttccatatgaa----tttttttcttttatttttgagatagggtctcactttgtcacccaggctggaacacagtggagccataccagctcactgcagccttaatctcctgaggttcaagcgatcctcctgcctcggccccctaagtagctgggactacatgcacatgccaccacacccagctaa-ttttgtaatttttgtaga
i manLeu1.NW_012107142v1   C 0 I 1137
s colAng1.NW_012115577v1     183540 2606 -   1829203 ------aatcacacacacacaca---atgagataccacttcccagtcacagaatggctagaatcaaaacatcagatagtaagtgttgttaaagatatgcaggaatgagaaccctcagacactgctggcaggaatgtgtaattacgtagtcccttcggaaggagtcaggctgtggctcaactgattaaaaatggagataccaaaggactcaccaattccattcctaggtatatgcccaatagaaataaaaatgtgtcacacaaaaatttgtaaataaacattcatagacgcattatttgtgttagccaaaagacaggaacaatccagatgtctataaactgataaataaaaaaatgtgatacatccatggaatgtag-------------gaaaaagcaatgaaatactgatacatgctataatgtaaatgatgcttggaaacattaagtgaaagaagccaatcacaaaagaccatatatgattatatttacatatgaattttccaaaataggcaaatccatacagatagaatatagattaattcttgcttagggtttgggatgaattcttgcttagggtttgggatgatgggcaagcagggataagagagtaatagctacagagcatggggtttctttttcaggtgatgataatattctaaaattcaatgtagtaatagttgcacatattggggaatatactttaaaactttgattgcataca---t----tttTTTCCAGATTTATTGAGGTATAATTGACAAAAATTGTAAATAAAGCATAGAGTGTGACtttttatttgtacataatatttgcacatatttacggggtacatgtgatattttgatacatgcatagtatctaataatgaagttagggt--ataggatatccattacctgaagcatttatttctctgtgttgggaatatttcaagtcttctcttctagttattttgaaatacacaatatattgttgttaattacagtcaccctactgtgctaccaaacactagaacttattcct----tctgactgtacgtttgtacccatcaacctacctctctccaacactgcc-----------------c---------cccgcacctcaccccacccctacacacacacccttcccagcctctggatactatctttctgctctttacctcgattagatcaacttttttaggctcgcacatgtgagtgagaacaatgcaatatttgtctttctgtgcctggcttatttcactcaatatcagaacctcctgttctgtccatgttagtggaaatgacaagattctgttctttttaaagctaaatagtattccattgtgtatatttgccacatcttcttaatctattcatccattgatggatagttaggttgattccctatctttgctattgtaaatagtaccacagtaaacatgggagtgccagtatccctttgatacatcaatttccttacctttggatcaatacccagtggtggtattgctggatcacatgtatctattttcagttttctgagaaatctccatactgttttccatagtggctgtactaacttaccttcccaccaaccgtgtgtaagagtttgtctttacatcctagctaccatttttgtctttttaataatagctattctagctagggtaagatgatatctcattgtggtttgctttaaatttccctaataattagtgatgttgagcatctttttcacacacatgttggccatttgtgtgtctttttttaaagaaatttctattcagatcccttgaccatttttaagggga--------------ttatttatttttttactgttgaattgtgttccttgtacactctggatattagttccctgttggataatttgaaaatttttttcccatctacagttggtctcttcactctgttgttttctttgcagtgcagatttttagtttaatatagtcccacctgcctattttttttgttgttgctgttgttgttgcctatgcttttgatgtcttaaccataaaatctttgcctagatcaatgttctcgagcatctcccctatgttcttgtttagtagtttta-agttttgggtctatcatttaagcctttaatccatttttggttgattttttaatatggtaagagatacaagcctagctgcattcttctgcatatggatatcctgttttcccagcaccatttattgaaaagggtgtcctttcttggtgcctttgttgaaagtcagttggctg-taagtacatggtattatttctgggttctctattctttccattggtctatgtgtctg-ttttatgccagtaccatgctgacttggttcctactataatagttacaaagctattactatagctatgtaatatattttgaagagaggtaatgtgatgcttccagctttgttgtttctgctcagaattgttttagctattggacggagctcttttgtggttccatatgaattttttttttttttttttttttgagatagggtctcactttgtcacccaggctggaacacagtggagcaataccagctcactgcagccttaatctcctgcggttcaagcgatcctcctgcctcggccccctaagtagctgggaccacatgcacatgccaccacacccagctaatttttgtaatttttgtaga
i colAng1.NW_012115577v1   I 14 I 1340
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           179025 1980 +    515838 I
e otoGar3.GL873550           215659 12540 +  18854210 I
e aotNan1.NW_018496904v1     295085 3938 -    383796 I
e cebCap1.NW_016107755v1     812329 1221 -   1771730 I
e calJac3.chr4             30356586  579 + 171630274 I
e chlSab2.chr17            29545382 3728 -  71996105 I

a score=-2200.000000
s hg38.chr6_GL000254v2_alt  1397346 1 +   4827813 -c
s panTro5.chr6             30270768 1 + 175400573 -c
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30501319 1 + 173848474 -c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     207880 1 +   2037526 -c
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74880227 1 + 122973662 -g
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30048637 1 - 170955103 g-
i macFas5.chr4             C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           179025 1980 +    515838 I
e otoGar3.GL873550           215659 12540 +  18854210 I
e aotNan1.NW_018496904v1     295085 3938 -    383796 I
e cebCap1.NW_016107755v1     812329 1221 -   1771730 I
e calJac3.chr4             30356586 579 + 171630274 I
e colAng1.NW_012115577v1     186146 1340 -   1829203 I
e manLeu1.NW_012107142v1     220300 1137 -    735854 I
e chlSab2.chr17            29545382 3728 -  71996105 I
e cerAty1.NW_012002535v1     394063 1141 -    863181 I
e macNem1.NW_012012100v1     297923 1101 +   1495729 I
e rheMac8.chr4             30753493 1106 + 172585720 I

a score=1093.000000
s hg38.chr6_GL000254v2_alt  1397347 1 +   4827813 a
s panTro5.chr6             30270769 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30501320 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     207881 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74880228 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30048638 1 - 170955103 a
i macFas5.chr4             C 0 I 1103
s cerAty1.NW_012002535v1     395204 1 -    863181 a
i cerAty1.NW_012002535v1   I 1141 C 0
s manLeu1.NW_012107142v1     221437 1 -    735854 a
i manLeu1.NW_012107142v1   I 1137 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           179025 1980 +    515838 I
e otoGar3.GL873550           215659 12540 +  18854210 I
e aotNan1.NW_018496904v1     295085 3938 -    383796 I
e cebCap1.NW_016107755v1     812329 1221 -   1771730 I
e calJac3.chr4             30356586 579 + 171630274 I
e colAng1.NW_012115577v1     186146 1340 -   1829203 I
e chlSab2.chr17            29545382 3728 -  71996105 I
e macNem1.NW_012012100v1     297923 1101 +   1495729 I
e rheMac8.chr4             30753493 1106 + 172585720 I

a score=1109034.000000
s hg38.chr6_GL000254v2_alt  1397348 254 +   4827813 tttcaccaGgaacaaatagaaaacttgaacagaccaacaatgagtaataagactgaatcagtaattaaaagtgtctcaataaagaaaagcccaggaccagatggctttcctgtcaaattctaccatacatac-aaagaaaaattaataccaatacttctcaaaatattt-aaaaaaaactgaagaggaaggaattattcttaactcattttatgaagcctgcattgccctgataccaaaagcagagaagaatacaa--------------
s panTro5.chr6             30270770 253 + 175400573 tttcaccaGgaacaaatagaaaacttgaacagaccaacaatgagtaataagactgaatcagtaattaaaagtgtctcaataaagaaaagcccaggaccagatggctttcctgtcaaattctaccatacatac-aaagaaaaattaataccaatacttctcaaaatattt-tttaaaaactgaagaggaaggaattattcttaactcattttatgaagcctgcattaccctgataccaaaagcagagaagaatac-a--------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30501321 252 + 173848474 tttcaccaGgaacaaatagaaaacttgaacagaccaacaatgagtaataagactgaatcagtaattaaaagtgtctcaataaagaaaagcccaggaccagatggctttcctgtcaaattctaccatacatac-aaagaaaaattaataccaatacttctcaaaatattt-taaaaaaactgaagaggaaggaattattcttaactcattttatgaagcctgcattaccctgataccaaaagcagagaagaatac----------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     207882 253 +   2037526 tttcaccaGgaacaaatagaaaacttgaacagaccaacaatgagtaataagactgaatcagtaattaaaagtgtctcaataaagaaaagcccaggaccagatggctttcctgtcaaattctaccatacatac-aaagaaaaattaataccaatacttctcaaaatatta-aaaaaaaactgaagaggaaggaattattcttaactcattttatgaagcctgcattaccctgataccaaaagcagagaagaatac-a--------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74880229 250 + 122973662 ttttaccaggaacaaatagaaaatttgaacagatcaataatgagtaataagactgaatcagtaattaaaagtgtctcaataaagaaaagcccaggaggaaatggctttcctgccaaattctaccatacatac-aaagaaaaattaataccaatacttctcaaaatattt-taaaaaaactgaagaggaaggaattcttcttaactcaatttatgaagcctgcattaccctgataccaaaagcag---agaatac-a--------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30754599 261 + 172585720 ttttaccaggaacaaatagaaaacttgaacacaccaataatgagtaataagactgaatcagtaattaaaagtgtctcaat-----aaagcccaggaccggatggctctcttgtcaaattctaccatacatataaaaaaaaaattaatagcaatacttctcaaaatatttcaaaaaaaactcgagaggagggaattcttcttaactcattttatgaagcctgcattaccctgataccaaaagcag---agaatac-aaaaaaagaaggaaa
i rheMac8.chr4             I 1106 C 0
s macFas5.chr4             30049742 261 - 170955103 ttttaccaggaacaaatagaaaacttgaacacaccaataatgagtaataagactgaatcagtaactaaaagtgtctcaat-----aaagcccaggaccggatggctctcttgtcaaattctaccatacatataaaaaaaaaattaatagcaatacttctcaaaatatttcaaaaaaaactcgagaggagggaattcttcttaactcattttatgaagcctgcattaccctgataccaaaagcag---agaatac-aaaaaaagaaggaaa
i macFas5.chr4             I 1103 C 0
s macNem1.NW_012012100v1     299024 260 +   1495729 ttttaccaggaacaaatagaaaacttgaacacaccaataatgagtaataagactgaatcagtaattaaaagtgtctcaat-----aaagcccaggaccggatggctctcttgtcaaattctaccatacatat-aaaaaaaaattaatagcaatacttctcaaaatatttcaaaaaaaactcgagaggagggaattcttctgaactcattttatgaagcctgcattaccctgataccaaaagcag---agaatac-aaaaaaagaaggaaa
i macNem1.NW_012012100v1   I 1101 C 0
s cerAty1.NW_012002535v1     395205 260 -    863181 tttcaccaggaacaaatagaaaacttgaacagaccaataatgagtagtaagactgaatcagtaattaaaagtgtctcaat-----aaagcccagcactggatggctctcttgtcaaattctaccatacatac-aaaaaaaaattaatagcaatacttctcaaaatatttcaaaaaaaattcaagaggagggaattcttcttaactcattttatgaagcctgtattaccttgataccaaaagcag---agaatac-aaaaaaagaaagaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29549110 260 -  71996105 ttttaccaggaaaaaatagaaaacttgaacacaccaataatgagtaataagactgaatcagtaattaaaagtgtctcaat-----aaagcccaggaccggatggctctcttgtcaaattctaccatacatat-taaaaaaaattaatagcaatacttctcaaaatatttcaaaaaaaactcaagaggagggaattcttcttaactcattttatgaagcctgcattaccctgataccaaaagcag---agaatac-aaaaaaagaaggaaa
i chlSab2.chr17            I 3728 C 0
s manLeu1.NW_012107142v1     221438 265 -    735854 tttcactgggaacaaatagaaaacttgaacagaccaataatgagtaataagactgaatcagtaattaaaagtgtctcaataaagaaaagcccaggaccggatggctctcttgtcaaattctaccatacatac-aaaaaaaaattaatagcaatacttctcaaaatatttcaaaaaaaactcaagaggagggaattcttcttaactcattttatgaagcctgtattaccctgataccaaaagcag---agaatac-aaaaaaagaaagaaa
i manLeu1.NW_012107142v1   C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           179025 1980 +    515838 I
e otoGar3.GL873550           215659 12540 +  18854210 I
e aotNan1.NW_018496904v1     295085 3938 -    383796 I
e cebCap1.NW_016107755v1     812329 1221 -   1771730 I
e calJac3.chr4             30356586 579 + 171630274 I
e colAng1.NW_012115577v1     186146 1340 -   1829203 I

a score=568380.000000
s hg38.chr6_GL000254v2_alt  1397602  97 +   4827813 aaaaaaaagaaaattacaggccaatcttcctagtgaaaatatacacaaaaatcctgaacaaaattttagcaaactgaatccaacaacatatcaaa-----aa
s panTro5.chr6             30271023  97 + 175400573 aaaaaaaagaaaattacaggccaatcttcctagtgaaaatatacacaaaaatcctgaacaaaattttagcaaactgaatccaacaacatatcaaa-----aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30501573  97 + 173848474 aaaaaaaagaaaattacaggccaatcttcctagtgaaaatatacacaaaaatcctgaacaaaattttagcaaactgaatccaacaacatatcaaa-----aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     208135  97 +   2037526 aaaaaaaagaaaattacaggccaatcttcctagtgaaaatatacacaaaaatcctgaacaaaattttagcaaactgaatccaacaacatatcaaa-----aa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74880479 102 + 122973662 aaaaaaaagaaaattacaggccaatcttcctagtgaaaatatacacaaaaatcctgaacaaaattttagcaaactgaatccaacaacatatcaaaaagataa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30754860  97 + 172585720 gaaagaaagaaaattacaggccaatcttcctagtgaaaatatacacaaaaatcctgaacaaaatgttagcaaactgaatccaacaacatatcaaa-----aa
i rheMac8.chr4             C 0 I 5
s macFas5.chr4             30050003  97 - 170955103 gaaagaaagaaaattacaggccaatcttcctagtgaaaatatatacaaaaatcctgaacaaaatgttagcaaactgaatccaacaacatatcaaa-----aa
i macFas5.chr4             C 0 I 5
s macNem1.NW_012012100v1     299284  97 +   1495729 gaaagaaagaaaattacaggccaatcttcctagtgaaaatatatacaaaaatcctgaacaaaatgttagcaaactgaatccaacaacatatcaaa-----aa
i macNem1.NW_012012100v1   C 0 I 5
s cerAty1.NW_012002535v1     395465  97 -    863181 gaaagaaagaaaattacaggccaatcttcctagtgaaaatatatacaaaactcctgaacaaaatgttagcaaactgaacccaacaacatatcaaa-----aa
i cerAty1.NW_012002535v1   C 0 I 5
s chlSab2.chr17            29549370  97 -  71996105 gaaagaaagaaaattacaggccaatcttcctagtgaaaatatatacaaaaatcctgaacaaaatgttagcaaactgaatccaacaacatatcaaa-----aa
i chlSab2.chr17            C 0 I 5
s manLeu1.NW_012107142v1     221703  97 -    735854 gaaagaaagaaaattacaggccaatcttcctagtgaaaatatacacaaaaatcctgaacaaaatgttagcaaactgaatccaacaacatatcaaa-----aa
i manLeu1.NW_012107142v1   C 0 I 4207
s colAng1.NW_012115577v1     187486  97 -   1829203 aaaagaaagaaaattacaggccaatcttcctagtgaaaatatatacaaaaatcctgaacaaaatgttagcaaactgaatccaacaacatatcaaa-----aa
i colAng1.NW_012115577v1   I 1340 I 5
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           179025 1980 +    515838 I
e otoGar3.GL873550           215659 12540 +  18854210 I
e aotNan1.NW_018496904v1     295085 3938 -    383796 I
e cebCap1.NW_016107755v1     812329 1221 -   1771730 I
e calJac3.chr4             30356586 579 + 171630274 I

a score=311587.000000
s hg38.chr6_GL000254v2_alt  1397699 55 +   4827813 tataccacaattaattgggattcatcccagggatacaagagtggttcaacacaca
s panTro5.chr6             30271120 55 + 175400573 tataccacaattaattgggattcatcccagggatacaagagtggttcaacacaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30501670 55 + 173848474 tataccacaattaattgggattcatcccagggatacaagagtggttcaacacaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     208232 55 +   2037526 tataccacaattaattgggattcattccagggatacaagagtggttcaacacaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74880581 55 + 122973662 cataccacagttaattgggatttatcccagggatacaagggtagttcaacacaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30754962 55 + 172585720 tacaccacaattaattgggatttatcccagggatacaacagtggttcaacacgca
i rheMac8.chr4             I 5 C 0
s macFas5.chr4             30050105 55 - 170955103 tataccacaattaattgggatttatcccagggatacaacagtggttcaacacgca
i macFas5.chr4             I 5 C 0
s macNem1.NW_012012100v1     299386 55 +   1495729 tataccacaattaattgggatttatcccagggatacaacagtggttcaacacgca
i macNem1.NW_012012100v1   I 5 C 0
s cerAty1.NW_012002535v1     395567 55 -    863181 tataccacaattaattgggatttatcccagggatacaacggtggttcaacacgca
i cerAty1.NW_012002535v1   I 5 C 0
s chlSab2.chr17            29549472 55 -  71996105 tataccacaattaattgggatttatcccagggatacaacagtgggtcaacacgca
i chlSab2.chr17            I 5 C 0
s manLeu1.NW_012107142v1     226007 55 -    735854 tataccacaattaattgggatttatcccagggatacaacagtggttcaacacgca
i manLeu1.NW_012107142v1   I 4207 C 0
s colAng1.NW_012115577v1     187588 55 -   1829203 tataccacaactaattgcgatttatcccagggatacaacagtggttcaacacgca
i colAng1.NW_012115577v1   I 5 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e saiBol1.JH378341           179025 1980 +    515838 I
e otoGar3.GL873550           215659 12540 +  18854210 I
e aotNan1.NW_018496904v1     295085 3938 -    383796 I
e cebCap1.NW_016107755v1     812329 1221 -   1771730 I
e calJac3.chr4             30356586 579 + 171630274 I

a score=102359.000000
s hg38.chr6_GL000254v2_alt  1397754 14 +   4827813 caaatcaacagaca
s panTro5.chr6             30271175 14 + 175400573 caaatcaacagaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30501725 14 + 173848474 caaatcaacagaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     208287 14 +   2037526 caaatcaacagaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74880636 14 + 122973662 caaatcaacagaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30755017 14 + 172585720 caaatcaatagaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30050160 14 - 170955103 caaatcaatagaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     299441 14 +   1495729 caaatcaatagaca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     395622 14 -    863181 caaatcaatagaca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29549527 14 -  71996105 caaatcaatagaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     226062 14 -    735854 caaatcaatagaca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     187643 14 -   1829203 caaatcaatagaca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30357165 14 + 171630274 caaataaataaata
i calJac3.chr4             I 579 I 7
s saiBol1.JH378341           181005 14 +    515838 caaataaataaata
i saiBol1.JH378341         I 1980 I 7
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215659 12540 +  18854210 I
e aotNan1.NW_018496904v1     295085 3938 -    383796 I
e cebCap1.NW_016107755v1     812329 1221 -   1771730 I

a score=240159.000000
s hg38.chr6_GL000254v2_alt  1397768 31 +   4827813 ttaaca--tTTTTTAATCTTATTTGAAAAGgtg
s panTro5.chr6             30271189 31 + 175400573 ttaaca--tTTTTTAATCTTATTTGAAAAGgtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30501739 31 + 173848474 ttaaca--tTTTTTAATCTTATTTGAAAAGgtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     208301 31 +   2037526 tTAACA--TTTTTTAATCTTATTTGAAAAGgtg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74880650 31 + 122973662 ttaaca--tTTTTTAATCTTATTTGAAAAGCtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30755031 32 + 172585720 tgaaca-tTTTTTTCATCTTATTTAAAAAGCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30050174 32 - 170955103 tgaaca-tTTTTTTCATCTTATTTAAAAAGCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     299455 33 +   1495729 tgaacatTTTTTTTCATCTTATTTAAAAAGCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     395636 32 -    863181 tgaaca-tTTTTTTCATCTTATTTGAAAAGCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29549541 32 -  71996105 tgaaca-tTTTTTTCATCTTATTTAAAAAGCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     226076 32 -    735854 tgaaca-tTTTTTTCATCTTATTTGAAAAGCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     187657 32 -   1829203 tgaaca-tTTTTTTCATCTTATTTGAAAACCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30357186 31 + 171630274 TTAACA--TTTTTAAATCTCATTTGAAAAACTG
i calJac3.chr4             I 7 C 0
s saiBol1.JH378341           181026 31 +    515838 TTAACA--TTTTAAAATCTCATTTGAAAACCtg
i saiBol1.JH378341         I 7 C 0
s cebCap1.NW_016107755v1     813550 31 -   1771730 TTAACA--TTTTAAAATCTCATTTGAAAAACtg
i cebCap1.NW_016107755v1   I 1221 C 0
s aotNan1.NW_018496904v1     299023 31 -    383796 TTAACA--TTTTCAAATCTCATTTGAAAAACTG
i aotNan1.NW_018496904v1   I 3938 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=593900.000000
s hg38.chr6_GL000254v2_alt  1397799 53 +   4827813 gataaaactgaatttggaattggaagatttgttttgggtccccactctgccat
s panTro5.chr6             30271220 53 + 175400573 gataaaactgaatttggaattgggagatttgttttgggtccccactctgccat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30501770 53 + 173848474 gataaaactgaatttggaattgggagatttgttttgggtccccactctgccat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     208332 53 +   2037526 gataaaactgaatttggaattgggagatttgttttgggtccccactctgccat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74880681 53 + 122973662 gataaaactgaatttggaattgggagatttgttttgggtccccactctgccat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30755063 53 + 172585720 GATAAAACTGAATGTGGAACTGGGAGATTTGTTTTGGGTGACCACTCTGCCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30050206 53 - 170955103 GATAAAACTGAATGTGGAACTGGGAGATTTGTTTTGGGTGACCACTCTGCCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     299488 53 +   1495729 GATAAAACTGAATGTGGAACTGGGAGATTTGTTTTGGGTGACCACTCTGCCAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     395668 53 -    863181 GATAAAACTGAATGTGGAATTGGGAGATTTGTTTTGGGTGACCACTCTGCCAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29549573 53 -  71996105 GATAAAACTGAATGTGGAACTGGGAGATTTGCTTTGGGTGACCACTCTGCCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     226108 53 -    735854 GATAAAACTGAATGTGGAACTGAGAGATTTGTTTTGGGTGACCACTCTGCCAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     187689 53 -   1829203 GATAAAACTGCATGTGGAATTGGGAGATTTGTTTTGGGTGACCACTCTGCCAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30357217 53 + 171630274 GATAAAATGGAATTTGGAATTGGGAGATTTGTTTTGGGTCCCTACTCTGCCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           181057 53 +    515838 gataaaactgaatttggaattgggagatttgttttgggtccccactctgccat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     813581 53 -   1771730 gataaaactgaatttggaattgggagatttgttttgggtccccactctgccat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     299054 53 -    383796 GATTAAACTGAATTTGGAATTGGGAAATTTGTTTTGGGTCCCCACTCTGCCAT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      83795 53 -   1411461 GATAAATCTGAGTTTGGAATTGGGAGATTTGTTTTGGGTCCGAACTCTGCCAC
i proCoq1.NW_012149775v1   N 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=52199.000000
s hg38.chr6_GL000254v2_alt  1397852 5 +   4827813 ttcca
s panTro5.chr6             30271273 5 + 175400573 ttcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30501823 5 + 173848474 ttcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     208385 5 +   2037526 ttcca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74880734 5 + 122973662 ttcca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30755116 5 + 172585720 TTCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30050259 5 - 170955103 TTCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     299541 5 +   1495729 TTCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     395721 5 -    863181 TTCCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29549626 5 -  71996105 TTCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     226161 5 -    735854 TTCCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     187742 5 -   1829203 TTCCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30357270 5 + 171630274 TTCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           181110 5 +    515838 gtcca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     813634 5 -   1771730 ttcca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     299107 5 -    383796 TTCCA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      83848 4 -   1411461 TT-TG
i proCoq1.NW_012149775v1   C 0 C 0
s dasNov3.JH569887             4941 5 -     22419 ttccc
i dasNov3.JH569887         N 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=999587.000000
s hg38.chr6_GL000254v2_alt  1397857 84 +   4827813 aactCAGTACTCTATCAGAACTAAGTCACAGGGTGCTTGAGGGCTCAGAA------GCTTTTGTCCAGCAGACAAGAAGGAACTGTTATT
s panTro5.chr6             30271278 84 + 175400573 aactCAGTACTCTATCAGAACTAAGTAACAGGGTGCTTGAGGGCTCAGAA------GCTTTTGTCCAGCAGACAAGAAGGAACTGTTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30501828 84 + 173848474 aactCAGTACTCTATCAGAACTAAGTAACAGGGTGCTTGAGGGCTCAGAA------GCTTTTGTCCAGCAGACAAGAAGGAACTGTTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     208390 84 +   2037526 aactCAGTACTCTATCAGAACTAAGTCACAGGGTGCTTGAGGGCTCAGAA------GCTTTTGTCCAGCAGACAAGAAGGAACTGTTATC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74880739 83 + 122973662 aactCAGTACTCTATCAGAACTAAGTCACAGGGTGC-TGAGGGCTCAGAA------GCTTTTGTCCAGCAGAGAAGAAGGAACTGTTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30755121 84 + 172585720 AACTTTGTACTCTATCAGAACTAAGTCGCAGGGTGCTTGAGGGCTAAGAA------GCTTTTGTCCAGCAGACAAGAAGGAACTGTTATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30050264 84 - 170955103 AACTTTGTACTCTATCAGAACTAAGTCGCAGGGTGCTTGAGGGCTAAGAA------GCTTTTGTCCAGCAGACAAGAAGGAACTGTTATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     299546 84 +   1495729 AACTTTGTACTCTATCAGAACTAAGTCGCAGGGTGCTTGAGGGCTAAGAA------GCTTTTGTCCAGCAGACAAGAAGGAACTGTTATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     395726 84 -    863181 AACTCTGTACTCTATCAGAACTAAGTCGCAGGGTGCTTGAGGGCTAAGAA------GCTTTTGTCCAGCAGACAAGAAGGAACTGTTATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29549631 84 -  71996105 AACTCTGTACTCTATCAGAACTAAGTCGCAGGGTGCTTGAGGGCTAAGAA------GCTTTTGTCCAGCAGACAAGAAGGAACTGTTATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     226166 84 -    735854 AACTCTGTACTCTATCAGAACTAAGTCGCAGGGTGCTTGAGGGCTAAGAA------GCTTTTGTCCAGCAGACAAGAAGGAACTGTTATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     187747 84 -   1829203 AACTCTGTACTCTATCAGAACTAAGTCGCAGGGTGCTTGAGGGCTAAGAA------GCTTTTGTCCAGCAGACAAGAAGGAACTGTTATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30357275 82 + 171630274 AACTCGGTACTCTATCAGAACTAAGTCACAGGGTGCTTGAGGGCTAAGAA------AC--TCATCCTGCAGACAAGAAGGAACTGTTATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           181115 84 +    515838 aactCAGTACTCTATCAGAACTAAGTCACAGGGTGCTTGAGGGCTAAGAA------ACTTTCATCCTGCAGACAAGAAGAAACTGTTATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     813639 83 -   1771730 aactCAGTACTCTATCAGAACTAAGTCCCAGAGTGCTTGAGGGCTAAGAA------ACTTTCATCCTGCAGACAAGAAGGAACTGTTA-T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     299112 84 -    383796 AACTCAGTATTCTATCAGAACTAAGTCACAGGGTGCTTGAGGGCTAAGAA------ACTTTCATCCTGCAGACAAGAAGGAACTGTTATT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      83852 87 -   1411461 AATTCAGTACTTTATCAAGGCTAAGTCACCAGGTACTTAATGGCTAAGAA-CCTGGACTTTTCTCCAGCAGACGAGAAGGAACTGTCA--
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr35            26279153 87 +  26524999 AGCTCTGAACTCTACTGGGG---GATGCCAGCGTGCCCCAGGGCTGACAAACCCGAACTCTCACTCAGCAGAGAACAGAGAAGCACTACT
i canFam3.chr35            N 0 C 0
s dasNov3.JH569887             4946 88 -     22419 agctcagtattcttCTAGGACTGAGTCACAGAGTGCTTGAAGGATGAGAACCTTGGACTTTTGCCCAGTAGTCAACATGGAACAGTTA--
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=491683.000000
s hg38.chr6_GL000254v2_alt  1397941 35 +   4827813 ACACAGCCTTTGACC------CTCTAGGGACTCCAGCAACC
s panTro5.chr6             30271362 35 + 175400573 ACACAGCCTTTGACC------CTCTAGGGACTCCAGCAACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30501912 35 + 173848474 ACACAGCCTTTGACC------CTCTAGGGACTCCAGCAACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     208474 35 +   2037526 ACACAGCCTTTGACC------CTCTAGGGACTCCAGCAACC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74880822 35 + 122973662 ACACAGCCTTTGACC------CTCTAGGGACTCCAGCAATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30755205 35 + 172585720 ACACAGCCTTTGACC------CTCTAAGGACTCCAGCAACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30050348 35 - 170955103 ACACAGCCTTTGACC------CTCTAAGGACTCCAGCAACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     299630 35 +   1495729 ACACAGCCTTTGACC------CTCTAAGGACTCCAGCAACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     395810 35 -    863181 ACACAGCCTTTGACC------CTCTAAGGACTCCAGCAACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29549715 35 -  71996105 ACACAGCCTTTGACC------CTCTAAGGACTCCAGCAACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     226250 35 -    735854 ACACAGCCTTTGACC------CTCTAAGGACTCCAGCAACC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     187831 35 -   1829203 ACACAGCCTTTGACC------CTCTAAGGACTCCAGCAACC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30357357 35 + 171630274 ACACAGCCTTTGACC------CTCTAGGGACTCCAGCAACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           181199 35 +    515838 ACACAGCCTTTGACC------CTCTAGGGACTCCTGCAACC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     813722 35 -   1771730 ACACAGCCTTTGACC------CTCTAGGGACTCCAGCAACC
i cebCap1.NW_016107755v1   C 0 I 354
s aotNan1.NW_018496904v1     299196 35 -    383796 ACACAGCCTTTGACA------CTCTAGGGACTCCAGCAACC
i aotNan1.NW_018496904v1   C 0 I 354
s micMur3.chr6               278236 35 + 123392446 ACACAGTCCTTGGCC------CTCTAGGTACTCCAGCAACC
i micMur3.chr6             N 0 C 0
s proCoq1.NW_012149775v1      83939 34 -   1411461 -CACAGCCCTTGGCC------CTCTAGGTATTCCAGCAACC
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr35            26279240 33 +  26524999 ----AACTCCTTACCCAGTGTCTCTGAGGATTTCAGC----
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             5034 30 -     22419 -CAGAGCCCTTTTCC------CTCCAGGGA----AGCACCC
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=55260.000000
s hg38.chr6_GL000254v2_alt  1397976 6 +   4827813 TCGTAC
s panTro5.chr6             30271397 6 + 175400573 TCGTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30501947 6 + 173848474 TCGTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     208509 6 +   2037526 TCGTAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74880857 6 + 122973662 TCGTAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30755240 6 + 172585720 TCGTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30050383 6 - 170955103 TCGTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     299665 6 +   1495729 TCGTAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     395845 6 -    863181 TCGTAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29549750 6 -  71996105 TCGTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     226285 6 -    735854 TCGTAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     187866 6 -   1829203 TCGTAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30357392 6 + 171630274 CAGTAC
i calJac3.chr4             C 0 I 373
s saiBol1.JH378341           181234 6 +    515838 CAGTAC
i saiBol1.JH378341         C 0 I 336
s micMur3.chr6               278271 6 + 123392446 TGGTAC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      83973 6 -   1411461 TGGTAC
i proCoq1.NW_012149775v1   C 0 C 0
s dasNov3.JH569887             5064 3 -     22419 ---TAT
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e canFam3.chr35            26279273 0 +  26524999 C
e otoGar3.GL873550           215659 12540 +  18854210 I
e aotNan1.NW_018496904v1     299231 354 -    383796 I
e cebCap1.NW_016107755v1     813757 354 -   1771730 I

a score=18026.000000
s hg38.chr6_GL000254v2_alt  1397982 2 +   4827813 TG
s panTro5.chr6             30271403 2 + 175400573 TG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30501953 2 + 173848474 TG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     208515 2 +   2037526 TG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74880863 2 + 122973662 TG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30755246 2 + 172585720 TG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30050389 2 - 170955103 TG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     299671 2 +   1495729 TG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     395851 2 -    863181 TG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29549756 2 -  71996105 TG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     226291 2 -    735854 TG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     187872 2 -   1829203 TG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30357771 2 + 171630274 TA
i calJac3.chr4             I 373 C 0
s saiBol1.JH378341           181576 2 +    515838 TA
i saiBol1.JH378341         I 336 C 0
s micMur3.chr6               278277 2 + 123392446 TA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      83979 2 -   1411461 TA
i proCoq1.NW_012149775v1   C 0 C 0
s dasNov3.JH569887             5067 2 -     22419 TA
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e canFam3.chr35            26279273 0 +  26524999 C
e otoGar3.GL873550           215659 12540 +  18854210 I
e aotNan1.NW_018496904v1     299231 354 -    383796 I
e cebCap1.NW_016107755v1     813757 354 -   1771730 I

a score=148310.000000
s hg38.chr6_GL000254v2_alt  1397984 11 +   4827813 AAAGGAGACTC
s panTro5.chr6             30271405 11 + 175400573 AAAGGAGACTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30501955 11 + 173848474 AAAGGAGACTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     208517 11 +   2037526 AAAGGAGACTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74880865 11 + 122973662 AAAGGAGACAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30755248 11 + 172585720 AAAGGAGATTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30050391 11 - 170955103 AAAGGAGATTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     299673 11 +   1495729 AAAGGAGATTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     395853 11 -    863181 AAAGGAGACTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29549758 11 -  71996105 AAAGGAGACTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     226293 11 -    735854 AAAGGAGACTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     187874 11 -   1829203 AAAAGAGACTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30357773 11 + 171630274 AAAGGAGACTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           181578 11 +    515838 AAAGGAGACTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     814111 11 -   1771730 AAAGGAGACTC
i cebCap1.NW_016107755v1   I 354 C 0
s aotNan1.NW_018496904v1     299585 11 -    383796 AAAGGAGACTC
i aotNan1.NW_018496904v1   I 354 C 0
s micMur3.chr6               278279 11 + 123392446 AAAGGAGACTC
i micMur3.chr6             C 0 I 174
s proCoq1.NW_012149775v1      83981 11 -   1411461 AAAGGAGACTC
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr35            26279273  2 +  26524999 ---------TC
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             5069 11 -     22419 AACAGGCACTC
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=338193.000000
s hg38.chr6_GL000254v2_alt  1397995 26 +   4827813 CTTGTC-TCCTTCTCTGGGGACCCTTT
s panTro5.chr6             30271416 26 + 175400573 CTTGTC-TCCTTCTCTGGGGACCCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30501966 26 + 173848474 CTTGTC-TCCTTCTCTGGGGACCCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     208528 26 +   2037526 CTTGTC-TCCTTCTCTGGGGACCCTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74880876 26 + 122973662 CTTGTC-TCCTTCTCTGGGGACCCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30755259 26 + 172585720 CTTGTC-TCCTTCTCTGGGAACCCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30050402 26 - 170955103 CTTGTC-TCCTTCTCTGGGAACCCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     299684 26 +   1495729 CTTGTC-TCCTTCTCTGGGAACCCTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     395864 26 -    863181 CTTGTC-TCCTTCTCTGGGGACGCTTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29549769 26 -  71996105 CTTGTC-TCCTTCTCTGGGAACCCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     226304 26 -    735854 CTTGTC-TCCTTCTCTGGGGACGCTTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     187885 26 -   1829203 CTTGTC-TCCTTCTCTGGGGACCCTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30357784 25 + 171630274 CTCATC--CCTTCTCTGGAGACCCTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           181589 26 +    515838 CTTGTC-TCCTTCTCTGGGGACCCTTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     814122 26 -   1771730 CTTGTC-TCCTTCTCTGGGGACCCTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     299596 26 -    383796 CTTGTC-TCCTTCTCTGGGGACACTTT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      83992 24 -   1411461 --TGTC-TCCTTCTCTGGGAACCCTTT
i proCoq1.NW_012149775v1   C 0 I 161
s canFam3.chr35            26279275 27 +  26524999 CCTGTCCTCCTCCTTGGGGAACCCTTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             5080 24 -     22419 --AGTT-CCCCTTTCTGAGAACCTGTT
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               278290 174 + 123392446 I
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=1360212.000000
s hg38.chr6_GL000254v2_alt  1398021 146 +   4827813 TGTTCAGA----AATAAAACTTT-----CGTGCTG-CAGGTGCCTTGAGGAGACGACATGTGGGTGATCTTTTCTAGAAGGCAGTGGAGTGAAAGTTTTGGGAAAA----GTGACAGAA--AGAGAAACAAATCCTG----TACTGGAAGCTCACTG-AAAACCAAC
s panTro5.chr6             30271442 146 + 175400573 TGTTCAGA----AATAAAACTTT-----AGTGCTG-CAGGTGCCTTGAGGAGACGACATGTGGGTGATCTTTTCTAGAAGGCAGTGGAGTGAAAGTTTTGGGAAAA----GTGACAGAA--AGAGACACAAATTCTG----TACTGGAAGCTCACTG-AAAACCAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30501992 150 + 173848474 TGTTCAGA----AATAAAACTTT-----AGTGCTG-CAGGTGCCTTGAGGAGACGACATGTGGGTGATCTTTTCTAGAAGGCAGTGGAGTGAAAGTTTTGGGAAAATTTTGTGACAGAA--AGAGACACAAATTCTG----TACTGGAAGCTCACTG-AAAACCAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     208554 146 +   2037526 TGTTCAGA----AATAAAACTTT-----CGTGCTG-CAGGTGCCTTGAGGAGACGACATGTGGGTGATCTTTTCTAGAAAGCAGTGGAGTGAAAGTTTTGGGAAAA----GTGACAGAA--AGAGAAACAAATCCTG----TACTGGAAGCTCACTG-AAAACCAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74880902 146 + 122973662 TGTTCAGA----AATAAAATTTT-----CGTGCTG-CAGGTGCCTTGAGGAGAGGACATGTGGATGATCTTTTCTAGAAGACAGTGGAGTGAAAGTTTTGGGAAAA----GAGACAGAA--AGAGAAACAAATCCTG----TACTGGAAGCTCATTG-AAAACCAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30755285 135 + 172585720 TGTTCAGA----AATAAAACTTT-----CATGCTG-CAGGTGCCCTGAG-----GACATGTGGGTGACCTTTACTAGAAGGCAGTGGAGTGAAAGTTTTGGGAAAA----GTGACAGAA--------ACAAATCCTG----TACTGGAAGCTCATTG-AAAACCAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30050428 135 - 170955103 TGTTCAGA----AATAAAACTTT-----CATGCTG-CAGGTGCCCTGAG-----GACATGTGGGTGACCTTTACTAGAAGGCAGTGGAGTGAAAGTTTTGGGAAAA----GTGACAGAA--------ACAAATCCTG----TACTGGAAGCTCATTG-AAAACCAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     299710 135 +   1495729 TGTTCAGA----AATAAAACTTT-----CATGCTG-CAGGTGCCCTGAG-----GACATGTGGGTGACCTTTACTAGAAGGCAGTGGAGTGAAAGTTTTGGGAAAA----GTGACAGAA--------ACAAATCCTG----TACTGGAAGCTCATTG-AAAACCAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     395890 135 -    863181 TGTTCAGA----AATAAAACTTT-----CATGCTG-CAGGTGCCTTGAG-----GACATGTGGGTGACCTTTACTAGAAGGCAGTGGAGTGAAAGTTTTGGGAAAA----GTGACAGAA--------ACAAATCCTG----TACTGGAAGCTCATTG-AAAACCAAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29549795 135 -  71996105 TGTTCAGA----AATAAAACTTT-----CATGCTG-CAGGTACCCTGAG-----GACATGTGGGTGACCTTTACTAGAAGGCAGTGGAGTGAAAGTTTTGGGAAAA----GTGACAGAA--------ACAAATCCTG----TACTGGAAGCTCATTG-AAAACCAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     226330 135 -    735854 TGTTCAGA----AATAAAACTTT-----CATGCTG-CAGGTGCCTTGAG-----GACGTGTGGGTGACCTTTACTAGAAGGCAGTGGAGTGAAAGTTTTGGGAAAA----GTGACAGAA--------ACAAATCCTG----TACTGGAAGCTCATTG-AAAACCAAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     187911 135 -   1829203 TGTTCAGA----AATAAAACTTT-----CATGCTG-CAGGTGCCTTGAG-----GACGTGTGGGTGACCTTTACTAGAAGGCAGTGGAGTGAAAGTTTTGGGAAAA----GTGACAGAA--------ACAAATCCTG----TACTGGAAGCTCATTG-AAAACCAAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30357809 151 + 171630274 TGTTTAGA----AATAAAACTTT---ATCATGCTC-CAGGTGACTTGGAGAGAGGACATGTGGGTGACCTTTTCTAGAAAGCAGTGGAGTGAAAGTTTTGGGAAAA----GTAACAGAA--AGAGAAACAAATCCTGAATTTACTGTAAGCTCATT--TAAATCAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           181615 150 +    515838 TGTTTAGA----AATAAAACTTT---ATCATGCTG-CAGGTGCCTTG--GAGAGGACATGTGGGTGACCTTTTGTAGAAAGCAGTGGAGTGAAAGTTTTGGGAAAA----GTGACAGAA--AGAGAAACAAATCTTGAATTTACTGGAGGCTCATTA-AAAATCAAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     814148 154 -   1771730 TGTTTAGA----AATAAAACTTTATCATCATGCTG-CAGGTGCCTTGGAGAGAGGACATGCGGGTGACCTTTTCTAGAAAGCAGTGGAGTGAAAGTTTTGGG-AAA----GTGACAGAA--AGAGAAACAAATCCTGAATTTACTGGAAGCTCATTA-AAAATCAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     299622 152 -    383796 TGTTTGGA----AATAAAACTTT---ATCATGCTG-TAGGTGCCTTGGGGAGAGGACATGTGGGTGACCTTTTCTACAAAGCAGTGGAGTGAAAGTTTTGGGAAAA----GTGACAGAA--AGAGAAACAAATCCTGAATTTACTGCAAGTTCGTTA-AAAATCAAC
i aotNan1.NW_018496904v1   C 0 C 0
s canFam3.chr35            26279302 145 +  26524999 CATCCAGACTTCAGTGAAACTAT-----TATGTGGCCAGGTGCCTTGAGAAGAAGGCATG-GGGTGCCCTTGTCTGGAAGACACCAGA--GAAAGTTCTATTAAGG----G-AATAAAT--AAAATTATGAATTT------TATTGGAGGGTGTTAA-AAGAACAAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             5104 135 -     22419 TGTTGAGAATTTATTGAAACTATTTTATCATGCTGCCAGCTGTCTTGAG----------------------------AAAGCAGTGGAGCAAAGGTTCTGAGAAAG----GAGATAGAAGGAGAAAAAAAAATCCTGAAGTCATTGGAAGGGCATTATAAAACCAAT
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               278290 174 + 123392446 I
e mm10.chr17               58018469 2227 -  94987271 I
e proCoq1.NW_012149775v1      84016 161 -   1411461 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=586836.000000
s hg38.chr6_GL000254v2_alt  1398167 40 +   4827813 -----TAAGTAAACAA--ATATTTTAGTACCTCAACTGAAATATAAG
s panTro5.chr6             30271588 40 + 175400573 -----TAAGTAAACAA--ATATTTTAGTACCTCAACTGAAATATAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30502142 40 + 173848474 -----TAAGTAAACAA--ATATTTTAGTACCTCAACTGAAATATAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     208700 40 +   2037526 -----TAAGTAAACAA--ATATTTTAGTACCTCAACTGAAATATAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74881048 40 + 122973662 -----TAAGTAAACAA--ACATTTTAGTACCTCAACTGAAATATAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30755420 40 + 172585720 -----TAAGTAAACAA--ATATTTTAGTACCTCAACTGAAATATAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30050563 40 - 170955103 -----TAAGTAAACAA--ATATTTTAGTACCTCAACTGAAATATAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     299845 40 +   1495729 -----TAAGTAAACAA--ATATTTTAGTACCTCAACTGAAATATAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     396025 40 -    863181 -----TAAGTAAACAA--ATATTTTAGTACCTCAACTGAAATATAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29549930 40 -  71996105 -----TAAGTAAACAA--ATATTTTAGTACCTCAACTGAAATATAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     226465 40 -    735854 -----TAAGTAAACAA--ATATTTTAGTACCTCAACTGAAATATAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     188046 40 -   1829203 -----TAAGTAAACAA--ATATTTTAGTACCTCAACTGAAATATAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30357960 40 + 171630274 -----TAAGTAAACAA--ATATTTTAGTACCTCAACTGAAATATAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           181765 39 +    515838 -----TAAGTAAACAA--ATA-TTTAATACCTCAACTGAAATATAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     814302 40 -   1771730 -----TAAGTAAACAA--AGATTTTAGTACCTCAACTGAAATATAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     299774 39 -    383796 -----TAAGTAGACAA--ATA-TTTAGTACCTCAACTGAAATATAAG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               278464 40 + 123392446 -----TAAGTAAAAAA--ATATTTTAGGATCTCAACTGAAATATAAG
i micMur3.chr6             I 174 I 864
s proCoq1.NW_012149775v1      84177 40 -   1411461 -----TAAGTAAACAA--ACATTTTAGGCTCTCAACTGAAATATAAG
i proCoq1.NW_012149775v1   I 161 I 384
s canFam3.chr35            26279447 41 +  26524999 -----TAAGTAAATAAAGATATGTTAGTATCTCAACTGAAATATAA-
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             5239 47 -     22419 TAAGATATGGACACAAAGATGTTTTCATACCTCATGTGAAATGTAAG
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=2921073.000000
s hg38.chr6_GL000254v2_alt  1398207 268 +   4827813 --CATAAACAGAGGTTGACTATGATTGTACCTGGACAAGATGAG--TAAAAAGCTAAAGTGGTCTGTTATCAGCTATTTATGTATTTTGGGC-----------------------CTGTCTCCAGCAGTTAACAAATGTC---CTttctttcaacaaatatctattaagaggct-aacatgtgccagactctACAGAACAGGCTTACAGGCATAATGCCACAAAGGAACAGAAATCTAACAGGCTTCAAGATCAGGCCTGTCAAATAAATGTACCACA--------------------------ATTTATATATCATACATATAT
s panTro5.chr6             30271628 289 + 175400573 --CATAAACAGAGGTTGACTATGATTGTACCTGGACAAGATGAG--TAAAAAGGTAAAGTGGTCTGTTATCAGCTATTTCTGTATTTTGGTCCTGGCTCTGCCTG--ACACAGTTCTGTCTCCAGCAGTTAACAAATGTC---CTttctttcaacaaatatctattaagaggct-aacatgtgccagactctACAGAACAGGCTTACAGGCATAATGCCACAAAGGAACAGAAATCTAACAGGCTTCAAGATCAGGCCTGTCAAATAAATGTACCACA--------------------------ATTtatatatcatatatatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30502182 289 + 173848474 --CATAAACAGAGGTTGACTATGATTGTACCTGGACAAGATGAG--TAAAAAGGTAAAGTGGTCTGTTATCAGCTATTTCTGTATTTTGGTCCTGGCTCTGCCTG--ACACAGTTCTGTCTCCAGCAGTTAACAAATGTC---CTttctttcaacaaatatctattaagaggct-aacatgtgccagactctACAGAACAGGCTTACAGGCATAATGCCACAAAGGAACAGAAATCTAACAGGCTTCAAGATCAGGCCTGTCAAATAAATGTACCACA--------------------------ATTtatatatcatatatatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     208740 289 +   2037526 --CATAAACAGAGGTTGACTATGATTGTACCTGGACAAGATGAG--TAAAAAGGTAAAGTGGTCTGTTATCAGCTATTTGTGTATTTTGGTCCTGGCTCTGCCTG--ACACAGTTCTGTCTCCAGCAGTTAACAAATGTC---CTttctttcaacaaatatctattaagaggct-aacatgtgccagactctACAGAACAGGCTTACAGGCATAATACCACAAAGGAACAGAAATCTAACAGGCTTCAAGATCAGGCCTGTCAAATAAATGTACCACA--------------------------ATTTATATATCATATATATAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74881088 289 + 122973662 --CATAAACAGAGGTTGACTATGATTGCACCTGGACAAGATGAG--TAAAAAGGTAAAGTGGTCTGTTATCAGCTATTTCTGTATTTTGGTCCTGGCTCTGCCTG--ACACAGTTCTGTCTCCAGCAGTTAACAAATGTC---CTttctttcaacaaatatctattaagaggct-aacatgtgcctgactctACAGAACAGGCTTACAGGCATAATTCCACAAAGGAACAGAAATCTAACAGGCTCCAAGATCAGGCCTGTCAAATAAATGTACCACA--------------------------GTTtatatatcttatatatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30755460 272 + 172585720 --CATAAACAAAGGTTGACTATGATTGTACCTGGACAGGATGAG--TAAAAAGGTAAAGTGGTCTGTTACCAGCTATTTCTGTATTTTGGTTCTGGCTC-------------------TCTCTAGCAGTTAACAAATGTC---CTttctttcaacaaagatctatcaagaggct-aacatgtgccagactctACAGAACAGGCTTACAGGCATAATGCCACAATGGAATAGAAATCTAACAGGCTCCAAGATCAGGCTTGTCAAATAAATGTACCACA--------------------------ATTtatataccttatatatat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30050603 272 - 170955103 --CATAAACAAAGGTTGACTATGATTGTACCTGGACAGGATGAG--TAAAAAGGTAAAGTGGTCTGTTACCAGCTATTTCTGTATTTTGGTTCTGGCTC-------------------TCTCCAGCAGTTAACAAATGTC---CTttctttcaacaaagatctatcaagaggct-aacatgtgccagactctACAGAACAGGCTTACAGGCATAATGCCACAATGGAATAGAAATCTAACAGGCTCCAAGATCAGGCTTGTCAAATAAATGTACCACA--------------------------ATTtatataccttatatatat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     299885 272 +   1495729 --CATAAACAAAGGTTGACTATGATTGTACCTGGACAGGATGAG--TAAAAAGGTAAAGTGGTCTGTTACCAGCTATTTCTGTATTTTGGTTCTGGCTC-------------------TCTCCAGCAGTTAACAAATGTC---CTttctttcaacaaagatctatcaagaggct-aacatgtgccagactctACAGAACAGGCTTACAGGCATAATGCCACAATGGAATAGAAATCTAACAGGCTCCAAGATCAGGCTTGTCAAATAAATGTACCACA--------------------------ATTtatataccttatatatat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     396065 272 -    863181 --CATAAACAAAGGTTGACTATGATTGTACCTGGACAGGATGAG--TAAAAAGGTAAAGTGGTCTGTTATCAGCTATTTCTGTATTTTGGTTCTGGCTC-------------------TCTCCAGCAGTTAACAAATGTC---CTttctttcaacaaatatctatcaagaggct-aacatgtgccagactctACAGAACAGGCTTACAGGCATAATGCCACAATGGAATAGAAATCTAACAGACTCCAAGATCAGGCTTGTCAAATAAATGTACCACA--------------------------ATTtatataccttatatatat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29549970 272 -  71996105 --CATAAACAAAGGTTGACTATGATTGTACCTGGACAGGATGAG--TAAAAAGGTAAAGTGGTCTGTTACCAGCTATTTCTGTATTTTGGTTCTGGCTC-------------------TCTCCAGCAGTTAACAAATGtt---ctttctttcaacaaagatctatcaagaggct-aacatgtgccagactctACAGAACAGGCTTACAGGCATAATGCCACAATGGAATAGAAATCTAACAGGCTCCAAGAACAGGCTTGTCAAATAAATGTACCACA--------------------------ATTtatataccttatatatat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     226505 272 -    735854 --CATAAACAAAGGCTGACTATGATTGTACCTGGACAGGATGAG--CAAAAAGGTAAAGTGGTCTGTTATCAGCTATTTCTGTATTTTGGTTCTGGCTC-------------------TCTCCAGCAGTTAACAAATGTC---CTttctttcaacaaatatctatcaagaggct-aacatgtgccagactctACAGAACAGGCTTACAGGCATAATGCCACAATGGAATAGAAATCTAACAGGCTCCAAGATCAGGCTTGTCAAATAAATGTACCACA--------------------------ATgtatgtaccttatatatat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     188086 259 -   1829203 --CATAAACAAAGGTTGACTATGATTGTACCTGGACAGGATGAG--TAAAAAGGTAAAGTGGTCTGTTATCAGCTATTTCTGTATTTTGGTTCTGGCTC-------------------TCTCCAGCAGTTAACAAATatc---ctttctttcaacaagtatctatcaagaggct-aacatgtgccagactctACAGAACAGGCTTACAGGCATAATGCCACAATGGAATAGAAATCTAACAGGCTCC-------------TCAAATAAATGTACCACA--------------------------GTTtatatatcttatatatat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30358000 292 + 171630274 --CATAAACAAAGGTTGACTATGATTGTACCTGGACAGGATGAG--TAAGAAGGCAAAGTGGTCTGTTATCAGCAATTTCTGTATTTTGGTCCTGGCTCTGCCTG--ACACCGTTGTGTCTCTAGCAGTTAACACATGTCCCtctttctttcaacaaatatctattaagtggct-aacatgtgtcagactctACAGAACAGGCTTAGAAGCATAATGCCACAATGAAATAGAAATCTAACAGGCTCCAAGATCAGGCTTGTCAAATAAATGTACCACA--------------------------ATTTATATATCATATATACGt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           181804 293 +    515838 --CATAAACAAAGGTTGACTATGACTGTACCTGGGCAGGATGAG--TAAGAAGGTAAAGTGGTCTGTTACCAGCTATTTCTGTATTTTGGTCCTGGCTCTGCCTG--ACACAGTTTTGTCTCCAGCAGTTAACAAATGCCCCtctttctttcagcaaatatatattaagaggctgaacatgtgccagactctACAGAACAGGCTTACAGGCATAATGCCACAATGAAATAGAAATCTAATGGGCTCCAAGATCAGGCTTGTCAAATAAATGTGCCACA--------------------------ACTtatatatcgtatatacat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     814342 292 -   1771730 --CATAAACAAAGGTTGACTATTACTGTACCTGGACAGGATGAG--TAAGAAGGTAAAGTGGTCTGTAAACAGCTATTTCTGCATTTTGGTCCTGGCTCTGCCTG--ACACAGTTGTGTCTCCAGCAATTAACAAATGTCCCACTttctttcagcaagtatctattaagtggct-aacatgtgccagactctACAGAACAGGCTTACAGGCATAATACCACAATGAAATAGAAATCTAACAGGCTCCAAGATCAGGCTTTTCAAACAAACGTACCGTA--------------------------ACTTATATATCACATATACAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     299813 292 -    383796 --CGAAAATCAAGGTTGACTATGATTGTACCTGGACAGGATGAG--TAAGAAGGTAAAGTGGTCTGTTATCAGCGATTTCTGTATTTTGGTCCTGGCTCTGCCTG--ACACAGTTGTGTCTCCAGCAGTTAACAAATGTCCCtctttctttcaacaaatatctattaagtggct-aacatgtgccagactctAAAGAACAGGCTTACAGGCATAATACCACAATGAAATAGAAATCTAACAGGCTCCAAGATCAGGCTTGTCAAATAAATGTACCACA--------------------------ACTTATATATCATATATACAT
i aotNan1.NW_018496904v1   C 0 C 0
s canFam3.chr35            26279488 283 +  26524999 ----CAAAGAGAGCTTGACTATGTTTGTGCATGGACAGGATA-------------GAAGCAGTATATTATCAGCTGTTTTTGTATTTTAGGGCAGGTTCTCTTGGACACACAGCTCTGCTTCTAGCAGGCAACAAATGTC-CTCTTTCCTTCAACAAATATTTG-----------AACG-------GACCCT-----ACAGGCTTGTGGGTATGG-ACTACAGTGCAATGAAAATCTAAGCAGCTCCAGGACTAGGCTCGTCACAGGAAGGTACCGTGCTtagatgccctgggcaaactcttgcacttgtgcaccagaaacatgt
i canFam3.chr35            C 0 I 179
s dasNov3.JH569887             5286 286 -     22419 ACCATAGA--AGAGCTGGCTGTGGTTGTGCACAGACAGGATGTGTCTGAAAAAGTGAAAGGGTAAGTTATCAGCTCTTTTTGTAGTTTGGACCTGTTTTTTTGGG--ACACTGGTCTGTTCCCAGCAGTTAAGAAATG-C---CTTTCTTTTAACAAATATTTCTTAAGACTGT-CATATGTGCC-GACTCT--CACACCTACTTATGTGTATAAGAACACAAGCAAGTGGAAACCTTACCAGCTTCAGGACAAGACTTGCCCTAT-AACGTGCCGTG--------------------------ACTAACGtgccctggagatat
i dasNov3.JH569887         C 0 I 1
e micMur3.chr6               278504 864 + 123392446 I
e mm10.chr17               58018469 2227 -  94987271 I
e proCoq1.NW_012149775v1      84217 384 -   1411461 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=1122242.000000
s hg38.chr6_GL000254v2_alt  1398475 108 +   4827813 CTAGTACACAGTCACCAGAAcataagattaaacatgt-----taatgtttatctaagtatcatttttaaaagaaaaataaaacaaaaactggaaacaa-ctaaatgacatcaac
s panTro5.chr6             30271917 113 + 175400573 ctagtacacaggcaccagaacataagattaaacatgttaaagtaatgtttatctaagtatcatttttaaaagaaaaataaaacaaaaactggaaacaa-ccaaatgacatcaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30502471 113 + 173848474 ctagtacacaggcaccagaacataagattaaacatgttaaagtaatgtttatctaagtatcatttttaaaagaaaaataaaacaaaaactggaaacaa-ccaaatgacatcaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     209029 113 +   2037526 CTAGTACACAGGCACCAGAACATAAGATTaaacatgttaaagtaatgtttatctaagtatcatttttaaaagaaaaataaaacaaaaactggaaacaa-ccaaatgacatcaac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74881377 109 + 122973662 ctagtacacaggcaccagaacataagattaaacatgtcaaaggaatgtttatctaagtatcacttttaaaagaa----aaagcaaaaactggaaacaa-ccaaatgacatcaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30755732 113 + 172585720 ctggtacacaggcaccagaacataagattaaatatgttaaaggaatgtttatctaagtatcatttttaaaagaaaaataaaacaaaaactggaaacaa-ccaaatgacattaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30050875 113 - 170955103 ctggtacacaggcaccagaacataagattaaatatgttaaaggaatgtttatctaagtatcatttttaaaagaaaaataaaacaaaaactggaaacaa-ccaaatgacattaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     300157 113 +   1495729 ctggtacacaggcaccagaacataagattaaatatgttaaaggaatgtttatctaagtatcatttttaaaagaaaaataaaacaaaaactggaaacaa-ccaaatgacattaac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     396337 113 -    863181 ctggtacacaggcaccagaacataagattaactatgttaaaggaatgtttatctaagtatcatttttaaaagaaaaataaaacaaaaattggaaacaa-ccaaatgacattaac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29550242 113 -  71996105 ctggtacacagacaccagaacataagattaaatatgttaaaggaatgtttatctaagtatcatttttaaaagaaaaataaaacaaaaactggaaacaa-ccaaataacattaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     226777 113 -    735854 ctggtacacaggcaccagaacataagactaaatatgttaaaggaatgtttatctaagtatcatttttaaaagaaaaataaaacaaaaactggaaacaa-ccaaatgacattaac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     188345 113 -   1829203 ctggtacacaggcaccagaacataagattaaatatgttaaaggaatgtttatctaagtatcatttttaaaagaaaaataaaacaaaaactggaaacaa-ccaaatgacattaac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30358292 107 + 171630274 ctggcacacaggcaccagaacatgagattaaacatgttaaaggaatgtttatctaaatat---ttttaaaagaaaaataaaacaaaaactgga---aa-ccaaatgataccaac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           182097 106 +    515838 ctggcacacaggcaccagaacatgagattaaacatgttaaaggaatgtttatctaaattt---ttttttaa-aaaaatgaaacaataaccgga---aa-ccaaatgacaccaac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     814634 107 -   1771730 CTGGCACACAGGCACCAGAACATGAGATTAAACATGTTAAAGGACTGTTTATCTAAATAT---TTTTAAAAGAAAAATAAAAcaaaaactgga---aa-ccaaatgacaccaac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     300105 107 -    383796 CTGGCACACAGGCACCAGAACATGAGATTAAACATGTTAAATGAATGTTTATCTAAATAT---TTTTAAAAGAAAAATAAAAcaaaaactgga---aa-ccaaatgacaccaac
i aotNan1.NW_018496904v1   C 0 C 0
s dasNov3.JH569887             5573 101 -     22419 cttgcacatgtgcagcagg----------aaacatgctaaaagaatgtttacacaagtaccatttgtaaaagaaa---aaaacaaaacctgaaaacaatccaaatgacatcaac
i dasNov3.JH569887         I 1 C 0
e micMur3.chr6               278504 864 + 123392446 I
e mm10.chr17               58018469 2227 -  94987271 I
e proCoq1.NW_012149775v1      84217 384 -   1411461 I
e canFam3.chr35            26279771 179 +  26524999 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=404810.000000
s hg38.chr6_GL000254v2_alt  1398583 33 +   4827813 ----agaatatataattaagttgtggcatattcatgt
s panTro5.chr6             30272030 33 + 175400573 ----agaatacataattaagttgtggcatattcatgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30502584 33 + 173848474 ----agaatatataattaagttgtggcatattcatgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     209142 33 +   2037526 ----agaatatataattaagttgtggcatattcatgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74881486 33 + 122973662 ----agaatatataattaaggtgtggcatattcatgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30755845 33 + 172585720 ----agaatatataattaagttgtggtatattcatgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30050988 33 - 170955103 ----agaatatataattaagttgtggtatattcatgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     300270 33 +   1495729 ----agaatatataattaagttgtggtatattcatgt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     396450 33 -    863181 ----agaatatataattaagttgtggtatattcatgt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29550355 33 -  71996105 ----agaatatataattaagttgtggtatattcatgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     226890 33 -    735854 ----agaatatataattaagttgtggtatattcatgt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     188458 33 -   1829203 ----agaatatataattaagttgtggtatatttatgt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30358399 33 + 171630274 ----agaatatataatttagttgtgacatattcatgc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           182203 33 +    515838 ----agaatatataatttagttgtgacatatttgtgc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     814741 33 -   1771730 ----agaatatataatttagttgtgacatattcatgt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     300212 33 -    383796 ----agaatatataatttagttgtgacatattcatgt
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      84601 33 -   1411461 ----agaatatataagtaagttgtggcatattcatgt
i proCoq1.NW_012149775v1   I 384 C 0
s dasNov3.JH569887             5674 36 -     22419 agtgagaa-aggtaattaagttgtggtatattcatgt
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               278504 864 + 123392446 I
e mm10.chr17               58018469 2227 -  94987271 I
e canFam3.chr35            26279771 179 +  26524999 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=3448104.000000
s hg38.chr6_GL000254v2_alt  1398616 332 +   4827813 catggaaatgaactaca-gtgtcacacatcaacatggatgaatccaaaaataataatgagcaaaagtagtc-agtcatataca-g-tataattctatttatataaaggctataaataagcaactg-----------------ttaggga----tacaca----gacagt-aaaatctataaa----agctaggtgacagtta-tac-aaaattcaggatagtggttgcctctggctgcaggggagagagatatgaat--------gagagcatac-gaggctcctgggatgtagtaatgttccatttctcag---tctgagcaacgggcacctggacatttattattgttcttctaaatataca---------ttttcat------------ttgtgtatt
s panTro5.chr6             30272063 332 + 175400573 catggaaatgaactaca-gtgtcacatatcaacatggatgaatccaaaaataataatgagcaaaagtagtc-agtcatataca-g-tataattctatttatataaaggctataaataagcaattg-----------------ttaggga----tacaca----gacagt-aaaatctataaa----agctaggtgacagtta-tac-aaaattcaggattgtggttgcctctggctgcgggggagagagatatgaat--------gagagcatac-gaggctcctgggatgtagtaatgttccatttctcag---tctgagcaacgggcacctggacatttattattgttcttctaaatataca---------ttttcat------------ttgtgtatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30502617 328 + 173848474 catggaaatgaactaca-gtgtcacacatcaacatggatgaatccaaaaataataatgagcaaaagtagtc-agtcatataca-g-tataattctatttatataaaggctataaataagcaactg-----------------ttaggga----tac--------acagt-aaaatctataaa----agctaggtgacagtta-tac-aaaattcaggatagtggttgcctctggctgcgggggagagagatatgaat--------gagagcatac-gaggctcctgggatgtagtaatgttccatttctcag---tctgagcaacgggcacctggacatttattattgttcttctaaatataca---------ttttcat------------ttgtgtatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     209175 331 +   2037526 catggaaatgaactaca-gtgtcacacatcaacatggatgaatccaaaaataataatgagcaaaagtagtc-agtcatataca-g-tataattctatttatataaaggctataaataagcaactg-----------------ttaggga----tacaca----gacagt-aaaatctataaa----agctaggtgacagtta-tac-aaaattcaggatagtggttgcctctggctgcgggggagagagatatgaat--------gagagcatac-gaggctcctgggatgtagtaatgttccatttctcag---tctgagcaacgggcacctggacatttattattgttcttctaaatataca---------ttttca-------------ttgtgtatt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74881519 344 + 122973662 catggaaatgaactaca-gtgtcacatatcaacatggatgaatccaaaaataataatgagcaaaagtagtc-agtcagataca-g-tataattctatttatataaaggctataaataagcaactg-----------------ttaggga----tacaca----gacagt-aaaatctataaa----agctaggtgacagtta-tac-aaaattcaggatattggttgcctctggctgcgggggagagagatatgaaa--------gagagcatac-gaggctcctgggatgtagtaatgttccatatctcag---tctgagcaatggacacctggacatttattattgttcttctaaatataca---------ttttcatttgtatattatattgtgtatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30755878 336 + 172585720 catggaaatgaactacc-gtgtcacacatcaacatggatgattccaaaaataataatgagcaaaagt-----aatcatataca-g-cataattctat-------aaggctataaataagcaactg-----------------ttaggga----tacaca----gacagt-aaaatttataaa----agttaggtgacaatta-tac-aaaattcaggatagtggttgattctggctatgggggagagagatatgaatg-----aggagagtatac-gaggctcctgggatgtagtaatgttccacttctcag---tttgagcaatgggcacctggacatttattattgttcttctaaatataca---------gtttcatttgtatattgtattgtgtatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30051021 336 - 170955103 catggaaatgaactacc-gtgtcacacatcaacatggatgattccaaaaataataatgagcaaaagt-----aatcatataca-g-cataattctat-------aaggctataaataagcaactg-----------------ttaggga----tacaca----gacagt-aaaatttataaa----agttaggtgacaatta-tac-aaaattcaggatagtggttgattctggctatgggggagagagatatgaatg-----aggagagtatac-gaggctcctgggatgtagtaatgttccacttctcag---tttgagcaatgggcacctggacatttattattgttcttctaaatataca---------gtttcatttgtatattgtattgtgtatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     300303 343 +   1495729 catggaaatgaactact-gtgtcacacatcaacatggatgattccaaaaataataatgagcaaaagt-----aatcatataca-g-cataattctatttatataaaggctataaataagcaactg-----------------ttaggga----tacaca----gacagt-aaaatttataaa----agttaggtgacaatta-tac-aaaattcaggatagtggttgattctggctatgggggagagagatatgaatg-----aggagagtatac-gaggctcctgggatgtagtaatgttccacttctcag---tttgagcaatgggcacctggacatttattatcgttcttctaaatataca---------gtttcatttgtatattgtattgtgtatt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     396483 343 -    863181 catggaaatgaactacc-gtgtcacacatcaacatggatgaatccaaaaataataatgagcaaaagt-----aatcatataca-g-tataattctatttatataaaggctataaataagcaactg-----------------ttaggga----tacaca----gacagt-aaaatttataaa----agttaggtgacaatta-tac-aaaattcaggatagtggttgattttggctgtgggggagagagatatgaatg-----aggagagtatac-gaggctcctgggatgtagtaatgttccacttctcag---tttgagcaatgggcacctggacatttattattgttcttctaaatatata---------gtttcatttgtatattgtattgtgtatt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29550388 343 -  71996105 catggaaatgaactacc-gtgtcacacatcaacctggatgattccaaaaataataatgagcaaaagt-----aatcatataca-g-tataattctatttatataaaggctataaataagcaactg-----------------ttaggga----tacaca----gacagt-aaaatttataaa----agttaggtgacaatta-tac-aaaattcaggatagtggttgattctggctgtgggggagagagatatgaatg-----aggagagtatac-gaggctcctgggatatagtaatgttccacttctcag---tttgagcaatgggcacctggacatttattattgttcttctaaatataca---------gtttcatttatatattgtattgtgtatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     226923 343 -    735854 catggaaatgaactacc-gtgtcacacatcaacatggatgattccaaaaataataatgagcaaaagt-----aatcatataca-g-tataattctatttatataaaggctataaataagcaactg-----------------ttaggga----tacaca----gacagt-aaaatttgtaaa----agttaggtgacaatta-tac-aaaattcaggatagtggttgattctggctgtgggggagagagagatgaatg-----aggagagtatac-gaggctcctgggatgtagtaatgttccacttctcag---tttgagcaatgggcacctggacatttattattgttcttctaaatataca---------gtttcatttgtatattgtattgtgtatt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     188491 342 -   1829203 catggaaatgaactacc-gtgtcacacatcaacatggatgaatccaaaaataataatgagcaaaagt-----aatcatataca-g-tataattctatttatataaaggctataaataagcaactg-----------------ttaggga----tacaca----gacagt-aaaatttataaa--------aggtgacaatta-tac-aaaattcaggatagtggttgattctggctgtgggggagagagatatgaatg-----aggagagtatac-gaggctcctgggatgtagtaatgttccacttctcagttttttgagcaatgggcacctggacatttattattgttcttctaaatataca---------gtttcatttgtatattgtattgtgtatt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30358432 319 + 171630274 catggaaatgaactaca-gtgtcacacatcaacatggatgaatccaaaaataataatgagcaaaagt-----aatcatatact-g-tataattctatttacataaaggctataaataagcaactg-----------------ttggaga----tac--------atagt-aaaatctataaa----agctaggtgacaatta-tac-aaaattcaggatagtggttgcccctaggggagggggagggagatatgaatg-----gggagagcatac-taggct-ctgggatgtagtaatgttccatttctcag---tctgagcaatgagcacctggacatttattattgttcttctaaataaaca---------ttttcat-------------------tt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           182236 317 +    515838 tgtggaaatgaactaca-gtgtcacacatcaacatggatgaatccaaa---aataatgagcaaaagt-----agtcatacaca-g-tataattctatttatataacggctataaataagcaactg-----------------ttgggga----tac--------atagt-aaaatctataaa----agctaggtgacaatta-aac-aaaattcaggatagtggttgcctctaggggtgggagagggagatatgaatg-----gggagaacagac-gaggctcctgggatgtagtaatgttccatttctcag---tctgagcaatgggcacctggacatttattattgttcttctaaataaata---------ttttcat-------------------tt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     814774 318 -   1771730 catggaaatgaactaca-gtgtcacacatcaacatggatgaatccaaa---aataatgagcaaaagt-----agtcatataca-g-tataattctatttgtataaaggctataaataagcaacta-----------------ttgggga----tac--------atagtaaaaatctataaa----agctaggtgacaatta-tac-aaaactcaggatggtggttgcctctaggggtgggagatggagatatgaatg-----gggagagcatag-gaggctcctgggatgtagtaatattccatttctcag---tctgagcaatgggcacctggacatttattattgttcttctaaataaaca---------ttttcat-------------------tt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     300245 317 -    383796 catggaaatgaactaca-gtgtcacacatcaacatggatgaatccaaaaataataatgagcaaaagt-----agtcatatacagg-tataattctatttatataaaggctataaataagcaactg-----------------ttgg-ga----tac--------atagt-aaaatctataaa----tgctaggtgacaatta-tacaaaaattcaggatagtggtt-tctctagggaagggag--ggagatatgaatg-----ggaagagcatgc-taggctcct-ggatgtagtaatgttccatttctcag---tctgagcaatgggc-cctggacatttattattgttcttctaaataaacat--------ttttcat-------------------tt
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      84634 362 -   1411461 catggaaatgaactaca-gggccacacatcaacatagatgaatccaaaaataaaaatgagctaaagta----agtcatatata-g-tataattccacttacataaagactataaacaagcagctataaaaaaattatatcacttagggatatctaccta----gttggt-aaaatctataaa----agctagatgacaatta-cac-aaaattcgggacagtagttgcctctaggagcaagggacagggatatgaatg-----gggagagcatacaggggctcctaaggtttggtaacattccatttctcag---cctgagcaaagggcg-ctggacatttattactattcttccaactgtacatatgtaacattttcag------------ttgtgtatt
i proCoq1.NW_012149775v1   C 0 I 39
s canFam3.chr35            26279950 327 +  26524999 aaagaaaatgatctatatgggttgcagctcaacatgg-tgaattaaaa---aatattgagtagaggagattaagttatatgca-g-tctgttttcatgtccataaat-ccataaatcggcagttg---cacaactatgtcacttaggga----tgcatacatcaatggc-aagtgctacaga----a---agatgatgatcc-gca-catggtcaggacagtga-------cgcctggagggatgaggaacaggacggttCGCAGGGGTGAGTAC-ATGGCCTTTAG--------------------CTCAG---CCAG-GTAGCGGG-ACCCATACA--AGTTACTATTCTTCCAACTGTACACAGACA---TTTTCAT------------TTGTATGTT
i canFam3.chr35            I 179 C 0
s dasNov3.JH569887             5710 327 -     22419 cacagagatgaactaca-atatgata---caacatgaatga-ttcaggaatattaatgagcccaaca-----agtcatataca-gttatacttatgtttatataaaggccataaacaggcagttc----------taaacatttaggga----tatgtagacaggtggc-aaaagctatgaagcagagcaaggtaataattaccgt-aaacttcaggac-gtggttgcct------gtcgggg---------caaatg-------gagaccccac-gggg-tcctggg--gtggcgatg-cccatttctcag---ccagcacagtagatgcccgagcatatatt---gttcttccaactgtaca---------cagacatttctaaatccttttgct----
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               278504 864 + 123392446 I
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=274648.000000
s hg38.chr6_GL000254v2_alt  1398948 38 +   4827813 gtatattctatttcacattaaaaaG-AAAAAAGACC--------AAA
s panTro5.chr6             30272395 41 + 175400573 gtatattctatttcacattaaaaaG-AAAAAAGACC-----AAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30502945 39 + 173848474 gtatattctatttcacattaaaaaG-AAAAAAGACC-------AAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     209506 25 +   2037526 gtatattctatttcacattaaa----------------------aaG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74881863 36 + 122973662 gtatattctatttcacattaaaaaG-AAAAAAGACC----------A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30756214 44 + 172585720 gtatattctatttcacattaaaaag-aaaaaagaccaaa--aaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30051357 44 - 170955103 gtatattctatttcacattaaaaag-aaaaaagaccaaa--aaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     300646 43 +   1495729 gtatattctatttcacattaaaaag-aaaaaagacc-aa--aaaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     396826 42 -    863181 gtatattctatttcacattaaaaaG-AAAAAAGACC--A--AAAAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29550731 44 -  71996105 gtatattctatttcacattaaaaag-aaaaaagaccaaa--aaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     227266 46 -    735854 gtatattctatttcacattaaaaag-aaaaaagaccaaaagaaaaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     188833 42 -   1829203 gtatattctatttcacattaaaaag-aaaaaaaaCC--C--AAAAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30358751 39 + 171630274 gtatatcctATTTCACGATAAAAAGAAAAAAAGACC--------CCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           182553 38 +    515838 gtatatcctatttcacaataaaaag-aaaaAAGACC--------CCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     815092 38 -   1771730 gtatatcctattTCACAATAAAAAG-AAAAAAGACC--------CCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     300562 36 -    383796 g-atatcctatttcacaataaaaag-aaaaAAGA-C--------CCA
i aotNan1.NW_018496904v1   C 0 C 0
s canFam3.chr35            26280277 38 +  26524999 --------CATTTCACATTGAAGAG-AAAAAAATAATACAGGAGCAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             6037 34 -     22419 gtacactacatttcacattcaaaag-aaaaccaaa------------
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               278504 864 + 123392446 I
e mm10.chr17               58018469 2227 -  94987271 I
e proCoq1.NW_012149775v1      84996 39 -   1411461 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=79574.000000
s hg38.chr6_GL000254v2_alt  1398986 7 +   4827813 AAAAAAA
s panTro5.chr6             30272436 7 + 175400573 AAAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30502984 7 + 173848474 AAAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     209531 7 +   2037526 AAAAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74881899 7 + 122973662 AAAAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30756258 7 + 172585720 aaaaaaG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30051401 7 - 170955103 aaaaaaG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     300689 7 +   1495729 aaaaaaG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     396868 7 -    863181 AAAAAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29550775 7 -  71996105 aaaaaaG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     227312 7 -    735854 aaaaaaG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     188875 7 -   1829203 AAAAAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30358790 7 + 171630274 AAAAAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           182591 7 +    515838 AAAAAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     815130 7 -   1771730 AAAAAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     300598 7 -    383796 AAAAAAG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               279368 6 + 123392446 -AAAAAG
i micMur3.chr6             I 864 I 1
s canFam3.chr35            26280315 7 +  26524999 AGGAAAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             6071 7 -     22419 aCCCAGG
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e proCoq1.NW_012149775v1      84996 39 -   1411461 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=296901.000000
s hg38.chr6_GL000254v2_alt  1398993 22 +   4827813 CATT----AAGTGTG-ACTCAAGATTT
s panTro5.chr6             30272443 22 + 175400573 CATT----AAGTGTG-ACTCAAGATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30502991 22 + 173848474 CATT----AAGTGTG-ACTCAAGATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     209538 22 +   2037526 CATT----AAGTGTG-ACTCAAGATTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74881906 22 + 122973662 CATT----AAGTGTG-ACTCAAGATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30756265 22 + 172585720 CGTT----AAGTGTG-ACTCAAGATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30051408 22 - 170955103 CGTT----AAGTGTG-ACTCAAGATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     300696 22 +   1495729 CGTT----AAGTGTG-ACTCAAGATTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     396875 22 -    863181 CGTT----AAGTGTG-ACTCAAGATTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29550782 22 -  71996105 CGTT----AAGTGTG-ACTCAAGATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     227319 22 -    735854 CGTT----AAGTGTG-ACTCAAGATTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     188882 22 -   1829203 CGTT----AAGTGTG-ACTCAAGATTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30358797 22 + 171630274 CATT----AAGTGTG-ACTAAAGATTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           182598 22 +    515838 CATT----AAGTGTG-ACTAAAGATTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     815137 22 -   1771730 CATT----AAGTGTG-ACTAAAGATTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     300605 22 -    383796 CATT----AAGTGTG-ACTAAAGATTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               279375 22 + 123392446 CATT----AAGTGTG-ACTCAAGATTT
i micMur3.chr6             I 1 I 32
s proCoq1.NW_012149775v1      85035 22 -   1411461 CATT----AAGTGTG-ACTCAGGATTT
i proCoq1.NW_012149775v1   I 39 C 0
s canFam3.chr35            26280322 20 +  26524999 CATT----GAGTGAG---TCACAATCT
i canFam3.chr35            C 0 I 2
s dasNov3.JH569887             6078 27 -     22419 CTTTGGGCAAGGGTGTGCTTGGGAGTA
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=-13145.000000
s hg38.chr6_GL000254v2_alt  1399015  9 +   4827813 AA---------------------------------GCAGACA
s panTro5.chr6             30272465  9 + 175400573 AA---------------------------------GCAGACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30503013  9 + 173848474 AA---------------------------------GCAGACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     209560  9 +   2037526 AA---------------------------------GCAGACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74881928  9 + 122973662 AA---------------------------------GCAGACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30756287  9 + 172585720 AA---------------------------------GCAGACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30051430  9 - 170955103 AA---------------------------------GCAGACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     300718  9 +   1495729 AA---------------------------------GCAGACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     396897  9 -    863181 AA---------------------------------GCAGACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29550804  9 -  71996105 AA---------------------------------GCAGACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     227341  9 -    735854 AA---------------------------------GCAGACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     188904  9 -   1829203 AA---------------------------------GCAGACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30358819 40 + 171630274 AAG--CAATGGTGCTTGGGAGTATTATCATATCATGCAGACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           182620 40 +    515838 AAA--CAATGGTGCTTGGGAGTATTATCGTATCATGCAGACA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     815159 40 -   1771730 AAG--CAATAGTGCTTGGGAATATTATCGTATCATGCAGACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     300627 40 -    383796 AAG--CAATGGTGCTTGGGAGTATTATCATACCATGCAGACA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      85057 32 -   1411461 --GAGCAAGGATGCTTGGGAGTATCAT--------TCACACC
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr35            26280344 28 +  26524999 ----------AGGCTGGGGGTGGTTACAGCATTGCTCA----
i canFam3.chr35            I 2 C 0
s dasNov3.JH569887             6105 18 -     22419 ----------------CGGAGGACCAT--------TCACACA
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               279397 32 + 123392446 I
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=335053.000000
s hg38.chr6_GL000254v2_alt  1399024 34 +   4827813 CAGTGCA---AAG-AAATGAAAAGGTGGATAT----AATT--TG
s panTro5.chr6             30272474 34 + 175400573 CAGTGCA---AAG-AAATGAAAAGGTGGATAT----AATT--TG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30503022 34 + 173848474 CAGTGCA---AAG-AAATGAAAAGGTGGATAT----AATT--TG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     209569 34 +   2037526 CAGTGCA---AAG-AAATGAAAAGGTGGATAT----AATT--TG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74881937 34 + 122973662 CAGTGCA---AAG-AAATGAAAAGGTGGATAT----AATT--TG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30756296 32 + 172585720 CAGTACA---AGG-AAATGAAAATGTAGATAT----AATT----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30051439 32 - 170955103 CAGTACA---AGG-AAATGAAAATGTAGATAT----AATT----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     300727 32 +   1495729 CAGTACA---AGG-AAATGAAAATGTAGATAT----AATT----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     396906 32 -    863181 CAGTGCA---AGG-AAATGAAAAGGTGGATAT----AATT----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29550813 32 -  71996105 CAGTACA---AGG-AAATGAAAAGGTAGATAT----AATT----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     227350 32 -    735854 CAGTGCA---AGG-AAATGAAAAGGTAGATAT----AATT----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     188913 32 -   1829203 CAGTGCA---AGG-AAATGAAAAGGTGGATAT----AATT----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30358859 36 + 171630274 CAGTGCA---AGG-AAATGAAAAGGTGGATAT----AATTTGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           182660 36 +    515838 CAGTGCA---AGG-AAATGAAAAGGTGGATAT----AATTTGTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     815199 36 -   1771730 CAGTGCA---AGG-AAATGAAAAGGTGGATAT----AATTTGTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     300667 36 -    383796 CAGTGCA---AGGAAAATGAAAAGGT-GATGT----AATTTGTG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               279429 34 + 123392446 CAGTACA---AGG-AAATGAAAAGGTGAATAT----AATT--TG
i micMur3.chr6             I 32 I 53
s proCoq1.NW_012149775v1      85089 34 -   1411461 CAGTACA---AGG-AAATGAAAAGGTGAATAT----AATT--TG
i proCoq1.NW_012149775v1   C 0 I 4
s canFam3.chr35            26280372 36 +  26524999 CACTCCATGCAGG-GGATGGAAGGCTAGTTGTTGGCA-------
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             6123 18 -     22419 CAGCACA-------AGATGAGAGAG-------------------
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=460918.000000
s hg38.chr6_GL000254v2_alt  1399058 54 +   4827813 AGGT--AGATGATGGATGCAGGTTTGGACAAACTGAGTTCCTGAAACATAGACTTT
s panTro5.chr6             30272508 54 + 175400573 AGGT--AGATGATGGATGCAGGTTTGGACAAACTGAGTTCCTGAAACATAGACTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30503056 54 + 173848474 AGGT--AGATGATGGATGCAGGTTTGGACAAACTGAGTTCCTGAAACATAGACTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     209603 54 +   2037526 AGGT--AGATGATGGATGCAGGTTTGGACAAACTGAGTTCCTGAAACATAGACTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74881971 56 + 122973662 AGGTAGAGATGATGGATTCAGGTTTGGACAAACTGAGTTCCTGAAACATAGACTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30756328 47 + 172585720 ---------TGATGGGTTCAGGTTTGGACAAAGTGAGCTCCTGAAACACAGATTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30051471 47 - 170955103 ---------TGATGGGTTCAGGTTTGGACAAAGTGAGCTCCTGAAACACAGATTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     300759 45 +   1495729 ---------TGATGGGTTCAGGTTTGGACAAAGTGAGCTCCTGAA--ACAGATTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     396938 47 -    863181 ---------TGATGGGTTCAGGTTTGGACAAAGTGAGCTCCTGAAACACAGATTTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29550845 47 -  71996105 ---------TGATGGGTTCAGGTTTGGACAAAGTGAGCTCCTGAAACACAGATTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     227382 47 -    735854 ---------TGATGGGTTCAGGTTTGGACAAAGTGAGCTCCTGAAACACAGATTTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     188945 47 -   1829203 ---------TGATGGGTTCAGGTTTGGACAAAGTGAGCTCCTGAAACATTGACTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30358895 56 + 171630274 AGGTAGAGATGATGGGTTCAGGTCTGCACAAACTGAGCTCCTGAAACACAGACCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           182696 56 +    515838 AGGTAGAGATGATGGGTTCAGGTGTGCACAAACTGAGCTCCTGAAACACAGACTTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     815235 56 -   1771730 AGGTAGAGATGATGGGTTCAGGTTTGCACAAACTGAGCTCCTGAAACACAGACTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     300703 53 -    383796 AGGTAGAGATGAT-AGTTCAAGTTTGTACAAACTGAGCTCCTG-AACACTGAC-TT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      85127 49 -   1411461 --ACGGAGATGATGGGTTCAGGTTTAGACAAA-----CTCTTTAACCACAGATTTC
i proCoq1.NW_012149775v1   I 4 C 0
s canFam3.chr35            26280408 51 +  26524999 --AGGGAGATGATGGAATCAGGTTGGGCCAAACTAAGCCCTTC---TTCAGACTTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             6141 45 -     22419 -------GAGGACGGA-GCAGGCCTAGACACACGTACCCTCTAA---CCAGACTTT
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               279463 53 + 123392446 I
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=3920310.000000
s hg38.chr6_GL000254v2_alt  1399112 302 +   4827813 TATTCTTAGCCGTATTAGGTGTGAAATTGCCCTGAGAGCACCAGTTGCTTTTATGCTAGATTTGGAGGGGAAAGAGGGCAGTTGAACTCAGCAA-TTTATGTGTCCAGCACTGAAAACCTTCATGGTAAACA-------ATTACTAA-----------------------------------------------------------------------------------------TAGGTTATATGTTAGGTTACTTTTCAGTCCCACTCAGCTCAAAGGGCTTGTCATTACCCTACTGATTTGCACTTCTAAGTCTTCTGCCTGTTGCATTCTGATGATCCATTTCTATGCAAAACATAGAATCTAAAGCTGAGACATAGCAATAGAGGACCAGAGA
s panTro5.chr6             30272562 302 + 175400573 TATTCTTAGCCATATTAGGTGTGAAATTGCCCTGAGAGCACCAGTTGCTTTTATGCTAGATTTGGAGGGGAAAGAGGGCAGCTGAACTCAGCAA-TTTGTGTGTCCAGCACTGAAAACCTTCATGGTAAACA-------ATTACTAA-----------------------------------------------------------------------------------------TAGGTTATATGTTAGGTTACTTTTCAGTCCCACTCAGCTCAAAGGGCTTGTCATTACCCTACTGATTTGCACTTCTAAGTCTTGTGCCTGTTGCATTCTGATGACCCATTTCTATGCAAAACATAGAATCTAAAGCTGAGACATAGCAATAGAGGACCAGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30503110 302 + 173848474 TATTCTTAGCCATATTAGGTGTGAAATTGCCCTGAGAGCACCAGTTGCTTTTATGCTAGATTTGGAGGGGAAAGAGGGCAGCTGAACTCAGCAA-TTTGTGTGTCCAGCACTGAAAACCTTCATGGTAAACA-------ATTACTAA-----------------------------------------------------------------------------------------TAGGTTATATGTTAGGTTACTTTTCAGTCCCACTCAGCTCAAAGGGCTTGTCATTACCCTACTGATTTGCACTTCTAAGTCTTGTGCCTGTTGCATTCTGATGACCCATTTCTATGCAAAACATAGAATCTAAAGCTGAGACATAGCAATAGAGGACCAGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     209657 302 +   2037526 TATTCTTAGCCATATTAGGTGTGAAATTGCCCTGAGAGCACCAGTTGCTTTTATGCTAGATTTGGAGGGGAAAGAGGGCAGTTGAACTCAGCAA-TTTATGTGTCCAGCACTGAAAACCTTCATGGTAAACA-------ATTACTAA-----------------------------------------------------------------------------------------TAGGTTATATGTTAGGTTACTTTTCAGTCCCACTCAGCTCAAAGGGCTTGTCATTACCCTACTGATTTGCACTTCTAAGTCTTCTGCCTGTTGCATTCTGATGATCCATTTCTATGCAAAACATAGAATCTAAAGCTGAGACATAGCAATAGAGGACCAGAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74882027 302 + 122973662 TATTCTTAGTCATATTAGGTGTGAAATTGCCCTGAGAGCACCAGTTGCTTTTATGCTAGATTTGGAGGGGAAAGAGGGCAGTTGAACTCAGCAA-TTTATTTGTCCAGCACTGAAAACCTTCATGGTAAACA-------ATTACTAA-----------------------------------------------------------------------------------------TAGGTTGTGTGTTAGGTTACTTTTCAGTCCCATTCAGCTCAAAGGGTTTGTCATTACCCTACTGATTTGCACTTCTAAGTCTTCTGCCTGTTGCGTTCTGATGATCCATTTCTATGCAAAACATAGAATCTAAAGCTGAGACATAGCAATAGAGGACCAGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30756375 302 + 172585720 TATTCTTAGTCATATTAGGTATGAAATTGCCCTGAGATCACCAGTTGCTTTTATGCTAGATTTGGAGGGGAAAGAGGGCAGCTGAACTCAGCAA-TTCATGTGTCCAGCACTGAAAATCTTCAAGGTAAACA-------ATTACTAA-----------------------------------------------------------------------------------------TAGGTTATGTGTTAGGTTACTTTTCAGTCCCACTCAGCTCAAAGGGTTTGTCATTACCCTACTGATTGGCACTTCTAAGTGTTCCGTCTGTTGCATTTTGATGATCTGTTTCTATGCAAGACATAGAATCTAAAGCTGAGACATAGCAATAGAAGACCAGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30051518 302 - 170955103 TATTCTTAGTCATATTAGGTATGAAATTGCCCTGAGATCACCAGTTGCTTTTATGCTAGATTTGGAGGGGAAAGAGGGCAGTTGAACTCAGCAA-TTCATGTGTCCAGCACTGAAAATCTTCAAGGTAAACA-------ATTACTAA-----------------------------------------------------------------------------------------TAGGTTATGTGTTAGGTTACTTTTCAGTCCCACTCAGCTCAAAGGGTTTGTCATTACCCTACTGATTGGCACTTCTAAGTGTTCCGTCTGTTGCATTTTGATGATCTGTTTCTATGCAAGACATAGAATCTAAAGCTGAGACATAGCAATAGAAGACCAGAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     300804 302 +   1495729 TATTCTTAGTCATATTAGGTATGAAATTGCCCTGAGATCACCAGTTGCTTTTATGCTAGATTTGGAGGGGAAAGAGGGCAGTTGAACTCAGCAA-TTCATGTGTCCAGCACTGAAAATCTTCAAGGTAAACA-------ATTACTAA-----------------------------------------------------------------------------------------TAGGTTATGTGTTAGGTTACTTTTCAGTCCCACTCAGCTCAAAGGGTTTGTCATTACCCTACTGATTGGCACTTCTAAGTGTTCCGTCTGTTGCATTTTGATGATCTGTTTCTATGCAAGACATAGAATCTAAAGCTGAGACATAGCAATAGAAGACCAGAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     396985 302 -    863181 TATTCTTAGTCATATTATGTATGAAATTGCCCTGAGATCACCAGTTGCTTTTATGCTAGATTTGGAGGGGAAAGACGGCAGTTGAACTCAGCAA-TTTATGTGTCCAGCACTGAAAATCTTCAAGGTGAACA-------ATTACTAA-----------------------------------------------------------------------------------------TAGGTTATGTGTTAGGTTACTTTTCAATCCCACTCAGCTCAAAGGGTTTGTCATTACCCTACTGATTGGCACTTCTAAGTCTTCCGTCTGTTGCATTCTGATGATCTGTTTCTATGCAAGACATAGAATCTAAAGCTGAGACATAGCAATAGAAGACCAGAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29550892 302 -  71996105 TATTCTTAGTCATATTAGGTATGAAATTGCCCTGAGATCACCAGTTGCTTTTATGCTAGATTTGGAGGGGAAAGAGGGCAGTTGAACTCAGCAA-TTTATGTGTCCAGCACTGAAAATCTTCAAGGTAAACA-------ATTACTAA-----------------------------------------------------------------------------------------TAGGTTATGTGTTAGGTTACTTTTCAGTCCCACTCAGCTCAAAGCGTTTATCATTACCCTACTGATTGGCACTTTTAAGTGTTCTGTCTGTTGCATTTTGATGATCTGTTTCTATGCAAGACATAGAATCTAAAGCTGAGACATAGCAATAGAAGACCAGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     227429 302 -    735854 TATTCTTAGTCATATTATGTATGAAATTGCCCTGAGATCACCAGTTGCTTTTATGCTAGATTTGGAGGGGAAAGAGGGCAGTTGAACTCAGCAA-TTTATGTGTCCAGCACTGAAAATCTTCAAGGTGAACA-------ATTACTAA-----------------------------------------------------------------------------------------TAGGTTATGTGTTAGGTTACTTTTCAGTCCCACTCAGCTCAAAGGGTTTGTCATTACCCTACTGATTGGCACTTCTAAGTCTTCCGTCTGTTGCATTCTGATGATCTGTTTCTATGCAAGACATAGAATCTAAAGCTGAGACATAGCAATAGAAGACCACAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     188992 302 -   1829203 TATTCTTAGTCATATTAGGTATGAAATTGCCCTGAGATCACCAGTTGCTTTTATGCTAGATTTGGAGGGAAAAGAGGGCAGTTGAACTCAGCAA-TTTATGTGTCCAGCACTGAAAATCTTCAAGGTAAACA-------ATTACTAA-----------------------------------------------------------------------------------------TAGGTTATGTGTTAGGTTACTCTTCAGTCCCACTCAGCTCAAAGGGTTTGTCATTACCCTACTGATTTGCACTTCTAAGTCTTCCGCCTGTTGCATTCTGATGATCTGTTTCTACGCAAGACATAGAATCTAAAGCTGAGACATAGCAATAGAAGACCAGAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30358951 297 + 171630274 TATTCTTAGTCATATTAGGTATGAAATTGCCCTCAGATCACCAGTTGCTTTTATGCTAGATATGGAAGGGAAAAGGGGGAGTTG-----TGCAA-TTTATGTGTCCAGCTCTGAAAATCTTCATTGTAAACA-------ATTACTAA-----------------------------------------------------------------------------------------TAGGTCATGTGTTAGGTTACTTTTCAGCCCCACTCAGCTCAAAGGATTTGTCATTACCCTACTGATTTGCACTTTTAAGTCTTCTGCCTGTTGCATTCTGGTGATCCATTTCTAAGCAAGATATAGAACCTAAAGCTGAGACATAGTGATAGAAGGCCAGAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           182752 278 +    515838 TATTCTTAGTCACATTAGGTATGAAATTGCCCTCAGATCACCAGTTGCTTTTATGCTAGATA--------------------TG-----CGTAATTTTATGTGTCCAGCTCTGAAAATCCTCATTGTAAACA-------ATTACTAA-----------------------------------------------------------------------------------------AAGGTCATGTGTTCGGTTACTTTTCAGCCCCACTGAACTCAAAGGATTTGTCATTACCCTACTGATTTGCCCTTCTAAGTCTTCTGCCTGTTGCATTCTGGTGACCCATTTCTAAGCAAGATAGAGAATCTAAAGCTGAGACATAGTGATAGAAGGCCAGAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     815291 297 -   1771730 TATTCTTAGTCATATTAGGTATGAAATTGCCCTCAGGTCACCAGTTGCTTTTATGCTAGATTTGGAGGGGAAGAAGGGGAGTTG-----TGCAA-TTTATGTGTCCAGCTCTGAAAATCTTCATTGTAAACA-------ATTACTAA-----------------------------------------------------------------------------------------TAGGTCATATGTTAGGTTACTTTTCAGCCCCAGTCAGTTCAAAGGATTTGTCATTACCCTACTGATTTGTACTTCTAAGTCTTCTGCCTGTTGCATTCTGGTGATCCATTTCTAAGCAAGATATAGAATCTAAAGCTAAGACATAGTGATAGAAGGCCAGAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     300756 296 -    383796 TATTCTTAGTCATATTAGGTATGAAATTGCCCTCAAATCACCAGTTGCTTTTATGCTAGATTTGGAGGGGAAATAGGAGAGTTG-----TGCAA-TTTATGTGCCCAGCTCTGAAAATCTTCATTGTAAACA-------ATTACTAA-----------------------------------------------------------------------------------------TAGGTCATGTGCTAGGTTACTTTTCGGCCCCACTCAGCTCAAAGGATTGGTCA-TACCATATTGATTTGCACTTCTAAGTCTTCTGCCTGTTGCATTCTGGTGATCCATTTCTAAGCAAGATATAGAATCTAAAGCTGAGACATAGTGATAGAAGGCCAGAGA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               279516 301 + 123392446 TATTTTTAGCCATGTTAGGTGTGAAATTGCTCTAAGATCACTGGTTA-TTTTAGGCTAGATTTGGAGGAGAAAGAGGGCAGTTGAACTCAGCAA-TTTATGTGTCTAGCATTGAAAATCTTCATGGTAAATA-------ATTATTAA-----------------------------------------------------------------------------------------TTGATTATATATTACATTTCTTTTCAGTCCCACTCAACTCAAAGGGTTTGATATTATTCTGTTGATTTGGATTTCTAAGTCTTCTTCCTCTTGCTTTGTGACGATCCATTTCTATGCAAGATATAGAATCTAAAGCTGGGACACAGTCATAGAAGACCAGAGA
i micMur3.chr6             I 53 C 0
s proCoq1.NW_012149775v1      85176 301 -   1411461 TATTCTTAGCCATGGTAGGTGTGAAATTGCTCAAAGATCATCGGTTA-TTTTAGACTAGATTTGTAGGAGAAAGAGGGCAGTTGAACTCAGCAA-TCTATGTGTCTAGCATTGAAAATCTTCATGGTAAAGA-------ATTACTAA-----------------------------------------------------------------------------------------TAGGTTATGTATTAGGTTACTTTTCAGACCCACTCAACTCAAAGGGTTTGATATTACTCTTTTGATTTGGATTTCCAAGTCTTCTTCCTGTTGCTTTCTGATGATCCATTTCTATGCAAGATACAGAACTTAAAGCTGAGACACAGTCATAGAAGACCAGAGA
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr35            26280459 388 +  26524999 TATTCTTAGCCACATGAGCT-TGACACTGCCTTGCCATCACCAGTTGCGTTTATGCTAGATTTGGA---GAAATGGGGCTGCTGACCTCACCAA-----TGTGTCCAGC-CTGAAAATCCTTGCAGGAAACATCGGCttatttttaagtcatctctatacccaacgtggggctcgaactcaggatcctgaggtcaggagttgcaggctccagcatctgagccggccaggctccccTCCAGTTATGTATGAGGCTGCTCTTTGGTCCCAGTCAACTCAAAGGGGT-ACCGCTACCCCATCGACCTGGGTTTCCAGGCCTCCTGCCCCTCATGCTCTGACAACACACATGGTTACAGGGCAGGGGATCCACCCCTAGGACATGGAGGTGGGAGGCCAGGGA
i canFam3.chr35            C 0 I 149
s dasNov3.JH569887             6186 282 -     22419 TCTTTGTAGCCACATTAGGTGTGAAACCGCCCTGGGAGCACTAGTTGCTTTCATGCTAGGTTTGGAG-----AGAGGGGAGCTGAATTCACTAG-TTTATACACCTAGCACTGGCAGTCTTCATGGT-AACA-------ATCACCAG-----------------------------------------------------------------------------------------CAGG-CACGTGCTGGGCTG-TTTTCAGTCCCACTCATCTCA---CTTTTGTCGTTGCT-TACTAACTTGCAT------GTCTTCTGCCTCTTGTGTTCTGATAACCCAC-TCTGTGCAAGGCACAGAACCCGGGGCTGGGACACGG-GACGGCAGGCCAGAGA
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=6094285.000000
s hg38.chr6_GL000254v2_alt  1399414 501 +   4827813 ACAGACACAGCAACGAAGTTTCCATGAGGCAAATCAGGAGGGTAGGAATGAGATTTTGATGTGCAT-----------CCTGGCCA---AATTCCAGAACTAGCAAAGAGA-GGTCAGTTCCTAATTCCAATCAAAGCAAATTCAGTCATCTTATTTTCACACAGAAGTGGTCTACATTGA-TTTTTAAATCTCTTTAAGGGATTAGGGAGC---CTCTGAAATGCAAAGGAAACTAAACTGATAGTAATGTAAAATGAACAGTGACCTATCA---TACCAGCAAACACTGTCAAAAACAGAAAGCTAATGGTGGGACTG----GAATCTAGAA----------CACAGAAGTTA-TGTTTATCCAGTGctacactgtgcaacagggtagtcacttgccacatgtggcaatttaaattta----------aatgaaattcaattaaacattccattccacagctgcaccagccacattttaaatgcctcaacagccacgtgtagcaag-ggctactgtactgaggagcacagacacagaacatttgtat----------------------c
s panTro5.chr6             30272864 502 + 175400573 ACAGACACAGCAACGAAGTTTCCATGAGGCAAATCAGGAGGGTAGGAATGAGATTTTGATGTGCAT-----------CCTGGCCA---AATTCCAGAACTAGCAAAGAGA-GGTCAGTTCCTAATTCCAATCAAAGCAAATTCAGTCATCTTATTTTCACACAGAAGTGGTCTACATTGA-TTTTTAAATCTCTTTAAGGGATTAGGGAGC---CTCTGAAATGCAAAGGAAACTAAACTGATAGTAATGTAAAATGAACAGTGACCTATCA---TACCAGCAAACACTGTCAAAAACAGAAAGCTAATGGTGGGACTG----GAATCTAGAA----------CACAGAAGTTATTATTTATCCAGTGctacactgtgcaacagggtagtcacttgccacatgtggcaatttaaattta----------aatgaaattcaattaaacattccattccacagctgcaccagccacattttaaatgcctcaacagccacgtgtagcaag-ggctactgtactgaggagcacagacacagaacatttgtat----------------------c
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30503412 501 + 173848474 ACAGACACAGCAACGAAGTTTCCATGAGGCAAATCAGGAGGGTAGGAATGAGATTTTGATGTGCAT-----------CCTGGCCA---AATTCCAGAACTAGCAAAGAGA-GGTCAGTTCCTAATTCCAATCAAAGCAAATTCAGTCATCTTATTTTCACACAGAAGTGGTCTACATTGA-TTTTTAAATCTCTTTAAGGGATTAGGGAGC---CTCTGAAATGCAAAGGAAACTAAACTGATAGTAATGTAAAATGAACAGTGACCTATCA---TACCAGCAAACACTGTCAAAAACAGAAAGCTAATGGTGGGACTG----GAATCTAGAA----------CACAGAAGTTA-TATTTATCCAGTGctacactgtgcaacagggtagtcacttgccacatgtggcaatttaaattta----------aatgaaattcaattaaacattccattccacagctgcaccagccacattttaaatgcctcaacagccacgtgtagcaag-ggctactgtactgaggagcacagacacagaacatttgtat----------------------c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     209959 501 +   2037526 ACAGACACAGCAACGAAGTTTCCATGAGGCAAATCAGGAGGGTAGGAATGAGATTTTGATGTGCAT-----------CCTGGCCA---AATTCCAGAACTAGCAAAGAGA-GGCCAGTTCCTAATTCCAATCAAAGCAAATTCAGTCATCTTATTTTCACACAGAAGTGGTCTACATTGA-TTTTTAAATCTCTTTAAGGGATTAGGGAGC---CTCTGAAATGCAAAGGAAACTAAACTGATAGTAATGTAAAATGAACAGTGACCTATCA---TACCAGCAAACACTGTCAAAAACAGAAAGCTAATGGTGGGACTG----GAATCTAGAA----------CACAGAAGTTA-TGTTTATCCAGTGctacactgtgcaacagggtagtcacttgccacatgtggcaatttaaattta----------aatgaaattcaattaaacattccattccacagctgcaccagccacattttaaatgcctcaacagccacgtgtagcaag-ggctactgtactgaggagcacagacacagaacatttgtat----------------------c
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74882329 501 + 122973662 ACAGACACAGCAACAAAGTTTCCATGAGGCAAATCAGGAGGGTAGGAATGAGATTTTGATATGCAT-----------CCTGGCCA---AATTCCAGAACTAGTGAAGAGA-AGCCAGTTCCTAATTCCAATCAAAGCAAATTCAGCCATCTTATTTTCACACAGAAGTGGTCTACATTGA-TTTTTAAATCTCTTTAAGGGATTAGGGAGC---CTCTGAAATACAAAGGAAACTAAACTGATAGTAATGTAAAATGAGCAGTGACCTATCA---TACCAGCAAACACTGTCAAAAACAGAAAGCTAATGGTGGGACTG----GAGTCTAGAA----------CACAGGAGTTA-TGTTTATCCAGTGctgcactgtacaacagggtagtcacttgccacatgtggcaatttaaattta----------aatgaaattcaattaaacattccattccacagctgcaccagccacattttaaatgcctcaatagccacatgtagcaag-ggctactgtactgaggagcacagacatagaacatttctat----------------------c
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30756677 493 + 172585720 ACAGACACAGCAACAAAGTTTGCATGAGGCAAATCAGGAGGGTAGGAATGAGATTTTGATGTGCAT-----------CCTGGCCA---AATTCCAGAACTAGCAAAGAGAGGGCCAGTTCCTAATTCCAATCAAAGCAAATTCAGCCACCTTATCTTCACACAGAAGTGATGTACATTGA-TTTTTAAATCTCTTTAAGGGATTAGGGAGC---CTCTGAAATACAAAGGAAACTAAACTGATAGTAATGTAAAACGAGCAGTG------------ACCAGCAAACACTGTCAAAAACAGAAAGCTAATGGTGGGACTG----GAGTCTAGAA----------CACAGGAGTTA-CGTTTATCCAGTGctgcactgtacaacagggcagtcacttgccacatgtggcaatttaaattta----------aatgaaattcaattaaactttccattctacagctgcactagccacattttgaatgcctcaacagccacctgtagcaag-ggctacagtactgagaagcacagacatagaacatttctat----------------------c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30051820 493 - 170955103 ACAGACACAGCAACAAAGTTTGCATGAGGCAAATCAGGAGGGTAGGAATGAGATTTTGATGTGCAT-----------CCTGGCCA---AATTCCAGAACTAGCAAAGAGAGGGCCAGTTCCTAATTCCAATCAAAGCAAATTCAGCCACCTTATCTTCACACAGAAGTGATGTACATTGA-TTTTTAAATCTCTTTAAGGGATTAGGGAGC---CTCTGAAATACAAAGGAAACTAAACTGATAGTAATGTAAAACGAGCAGTG------------ACCAGCAAACACTGTCAAAAACAGAAAGCTAATGGTGGGACTG----GAGTCTAGAA----------CACAGGAGTTA-CGTTTATCCAGTGctgcactgtacaacagggcagtcacttgccacatgtggcaatttaaattta----------aatgaaattcaattaaacattccattctacagctgcactagccacattttgaatgcctcaacagccacctgtagcaag-ggctacagtactgagaagcacagacatagaacatttctat----------------------c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     301106 493 +   1495729 ACAGACACAGCAACAAAGTTTGCATGAGACAAATCAGGAGGGTAGGAATGAGATTTTGATGTGCAT-----------CCTGGCCA---AATTCCAGAACTAGCAAAGAGAGGGCCAGTTCCTAATTCCAATCAAAGCAAATTCAGCCACCTTATCTTCACACAGAAGTGATGTACATTGA-TTTTTAAATCTCTTTAAGGGATTAGGGAGC---CTCTGAAATACAAAGGAAACTAAACTGATAGTAATGTAAAACGAGCAGTG------------ACCAGCAAACACTGTCAAAAACAGAAAGCTAATGGTGGGACTG----GAGTCTAGAA----------CACAGGAGTTA-CGTTTATCCAGTGctgcactgtacaacagggcagtcacttgccacatgtggcaatttaaattta----------aatgaaattcaattaaacattccattctacagctgcactagccacattttgaatgcctcaacagccacctgtagcaag-ggctacagtactgagaagcacagacatagaacatttctat----------------------c
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     397287 502 -    863181 ACAGACACAGCAACAAAGTTTGCATGAGGCAAATCAGGAGGGTAGGAATGAGATTTTGATGTGCAT-----------CCTGGCCA---AATTCCAGAACTAGCAAAGAGAGGGCCAGTTCCTAATTCCAATCAAAGCAAATTCAGCCACCTTATCTTCACACAGAAGTGATTTACATTGA-TTTTTAAATCTCTTTAAGGGATTAGGGAGC---CTCTGAAATACAAAGGAAACTAAACTGATAGTAATGTAAAATGAGCAGTGACCTATCA---TACCAGCAAACACTGTCAAAAACAGAAAGCTAATGGTGGGACTG----GAGTCTAGAA----------GACAGGAGTTA-TGTTTATCCAGTGctgcactgtacaacagggcagtcacttgccacatgtggcaatttaaattta----------aatgaaattcaattaaacattccattctacagctgcactagccacattttgaatgcctcaacagccacttgtagcaag-ggctacagtactgagaagcacagacatagaacatttctat----------------------c
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29551194 493 -  71996105 ACAGACACAGCAACAAAGTTTGCATGAGGCAAATCAGGAGGGTAGGAATGAGATTTTGATGTGCAT-----------CCTGGCCA---AATTCCAGAACTAGCAAAGAGAGGGCCAGTTCCTAATTCCAATCGAAGCAAATTCAGCCACCTTATCTTCACACAGAAGTGATGTACATTGA-TTTTTAAATCTCTTTAAGGGATTAGGGAGC---CTCTGAAATACAAAGGAAACTAAACTGATAGTAATGTAAAACGAGCAGTG------------ACCAGCAAACACTGTCAAAAACAGAAAGCTAATGGTGGGACTG----GAGTCTAGAA----------CACAGGAGTTA-CATTTATCCAGTGctgcactgtacaacagggcagtcacatgccacatgtggcaatttaaattta----------aatgaaattcaattaaacattccattctacagctgcactagccacattttgaatgcctcaacagccacttgtagcaag-ggctacagtactgagaagcacagacatagaacatttctat----------------------c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     227731 502 -    735854 ACAGACACAGCAACAAAGTTTGCATGAGGCAAATCAGGAGGGTAGGAATGAGATTTTGATGTGCAT-----------CCTGGCCA---AATTCCAGAACTAGCAAAGAGAGGGCCAGTTCCTAATTCCAATCAAAGCAAATTCAGCCACCTTATCTTCACACAGAAGTGATTTACATTGA-TTTTTAAATCTCTTTAAGGGATTAGGGAGC---CTCTGAAATACAAAGGAAACTAAACTGATAGTAATGTAAAAAGAGCAGTGACCTATCA---TACCAGCAAACACTGTCAAAAACAGAAAGCTAATGGTGGGACTG----GAGTCTAGAA----------CACAGGAGTTA-TGTTTATCCAGTGctgcactgtacaacagggcagtcacttgccacatgtggcaatttaaattta----------aatgaaattcaattaaacattccattctacagctgcactagccacatttcaaatgcctcaacagccacttgtagcaag-ggctacagtactgagaagcacagacatagaacatttctat----------------------c
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     189294 498 -   1829203 ACAGACACAGCAACAAAGTTTGCATGAGGCAAATCAGGAGGGTAGAAATGAGATTTTGATGTGCAT-----------CCTGGCCA---AATTCCAGAACTAGCAAAGAGACGGCCAGTTCCTAATTCCA----AAGCAAATTCAGCCACCTTATCTTCACACAGAAGTGATCTACATTGA-TTTTTAAATCTCTTTAAGGGATTAGGGAGC---CTCTGAAATACAAAGGAAACTAAACTGATAGTAATGTAAAATGAGCCGTGACCTATCA---TACCAGCAAACACTGTCAAAAACAGAAAGCTAATGGTGGGACTG----GAGTCTAGAA----------CACAGGAGTTA-TGTTTATCCAGTGctgcactgtacaacacggcagtcacttgccacatgtggcaatttaaattta----------aatgaaattcaattaaacattccattctacagttgcactagccacattttgaatgcctcaacagtcacttgtagcaag-ggctacagtactgaggagcacagacatagaacatttctat----------------------c
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30359248 528 + 171630274 ACAGACACAGCAGCAAAGTTTACATGAGGCAAATCAGGAGGGTAGGACTGAGATTCTGATATGCAT-----------CCTGGCCA---AATTCCAGAACTAGCAAAGAGAGGGCCAGTTCCTAATTCCAATCAAAGCAAATTCAGCCCTCTTATTTTCACACAGAAGTGGTCTATCTTGA-TTTTTAAATCTCTTGAAGGGATTAGGGAGC---CTCTGAAATATAAAGGAAACTAAACTGACAGTAATGTAAAATGAATAGTGACCTATCA---TACCAGCAAACACTGTCAAAAACAGTAAGCTACTGGTGGGACTGGCCAGAGTCTAGAA----------CACAGGAGTTA-TGTTTATCCAGTGCCAcactgtacaacaaagcagtcacttcgcacatgtggcaacttaaattta----------aaagaaattcaattaaacattccattccacagctgcactagccacattttaaatgcctcaatacccacatgtagcgag-gactactgtactgaagagcagaggcacagaacatttctatcataactgaaagttctattgaac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           183030 515 +    515838 ACAGACACAGCAACAAAGTTTGCATGAGGCAAATCAGGAGGGTAGGAATGAGATTTTGATATGCAT-----------CCTGGCCA---AATTCCAGAACTAGCAAAGAGAGGGCTAGTTCCTAATTCCAATCAAAGCAAATTCAGCCCTCTTATTTTCAGACAGAAGTGGTCTACCTTGATTTTTTAAATCTCTTGAAGGGATT----------------AATATAAAGGAAACTAAACTGATAGTAATATAAAATGAATAGTGACCTATCA---TACCAGCAAACACTGTC-AAAACAGAAAGCTACTGGTGGGACCGTCCAGAGTCTAGAA----------CACAGGAGTTA-TGTTTATCCAGTGCCAcattgtacaacagagcagtcacttgccacatgtggcaacttaaattta----------aatgaaattgaattaagcattccattccacagctgcactagccacattttaaatgcctcaatacccacatgtagcaag-gattactgtactgaagagcagagacatagaacatttctatcataactcaaagttctattgaac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     815588 527 -   1771730 ACAGACACAGCAACAAAGTTTGCATGATGCAAATCAGGAGGGTAGGAATGAGATTTTGATAGGCAT-----------CCTGGCCA---AATTCCAGAACTAGCAAAGAGAAGGCCAGTTCCTAATTCCAATCAAAGC-AATTCAGCCCTCATATTTTCACACAGAAGTGGTCTACCTTGA-TTTTTAAATCTCTTGAAGGGATTAGGGAGC---CTCTGAAATATAAAGAAAACTAAACTGATAGTAATGTAAAATGAATAGTGACCTATCA---TACCAGCAAACACTGTCAAAAACAGAAAGATACTGGTGGGACCGGCCAGAGTCTAGAA----------CACAGGAGTTA-TGTTTATCCAGTGCCATActgtacaacagagcagtcacttgccacatgtggcaacttaaattta----------aatgaaattcaattaagcattccattccacagctgcactagccacattttaaatgcctcaatacccacatgtagcgag-gactactgtactgaagagcagagacatagaacatttctgtcataactgaaagttctattgaac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     301052 524 -    383796 ACAGACACAGCAACAAAGTTTGCATGAGGCAAATCTGGAGGGTAGGAATGAGATTTTGATATGCAT-----------CCTGGCCA---AATTCCAGAACTAGC----AGAGGGCCAGTTCCTAATTCCAATTAAAGCAAATTCGGCCCTCTTATTTTCACACAGAAGCGGTCTATATTGA-TTTTTAAATCTCTTGAAGAGATTAGGGAGC---CTCTGAAATATAAAGGAAACTAAACTGATAGTAATGTAAAATGAATAGTGACCTATCA---TGCCAGCAAACACTGTCAAAAACAGAAAGCTACTGGTGGGACCAGCCAGAGTCTAGAA----------CACAGGAGTTA-TGTTTATCCAGTGCCATActgtacaacagagtagtcacttgccacatgtggcaacttaaattta----------aatgaaattcaattaaacattccattccacagctgcactagccacattttaaatgcctcaatacccacatgtagcaag-gactactgtactgaagaacagagacataaaacatttctatcataactcaaagttctattgaac
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               279817 508 + 123392446 ACAG-----------AGGTTTGTATGAGGCAAGTAAGGTGGGTAGGAATGACATTTTGGTGCACAT-----------CCCGGCTA---AATTCCAGAACTAGCAAAGAGAAGGCCATTTCCAAAACCCAATTTAAGCAAATTCAACCATCTCATTTCCACA---AAGTTGTCTACATTGC-CTTTTTAATCTCTTTAAGGCATTAGGGGGG---CTCTGAAATATAAAGGAAACTAAACAGACACTAATGTAAGACAAGCAGTGATCTATCC---TAGCAGC-AACACTGTCAAAGACAGAAAGCTGACGGTAGGACTG----GAATCTAGACATAGAGTCATAACAGGAGTTA-TGTTTATCCAGTGctgctttgtataatagggcagacacatgccacatgtggcaatttaaatttaaattaattaaaattaaattaaatttaaaattccattcctcagcttcactaatcacatttttaatgcctcaatagccacatgtagcaagtggctactgtgttgaagagcacagatatagaacatttctat----------------------c
i micMur3.chr6             C 0 I 26
s proCoq1.NW_012149775v1      85477 499 -   1411461 ACAG-----------AAGTTTGTATGAGGCAAGTAAGGTGCATAGGAATGAGATTTTGGTGCGCAT-----------CCTGGCTA---AATTCCAGAACTAGCAAAGAGAGGGCCAGTTCCTAAACCCAACTGAAGCAAATTCAGCCATCTCATTTCCACA---AATTTGTCTACATTGC-CTCTTTAATCTCTTTAAGGCCTTGGGGGGGGGCTTCTAAAATATAAAGGAAACTAAACAGATACTAATGTAAGACAAGCAGTGATCTATCA---TAGCAGC-AACACTGTCAAAGACAGAACGCTGATGGTAGGATTG----GAATCTAGACATAGATTCATAACAGGAGTTA-TGTTTATCCAGTGctgcgttgtataatagggcagtcacatgccacatgcggcaatttaaatt------------aattaaaataaatttagaattccattcctcagcttcactaatcacattttaaatgcctcaatggccacatgtagcaagtggctactgtattgaagagcacagatatagaacatttctat----------------------c
i proCoq1.NW_012149775v1   C 0 C 0
s dasNov3.JH569887             6468 473 -     22419 AAGGCCAAGGCACGG------GCATGAGGCCAGGCGAGTGGGCAAGAGTGGGCTGTTGCTGTGCGTCACCCTCGAGGCCTGGACAGCGAGCCTCAGAACTAGCAATGAGT-GGCCGATTCCCAAACCCCATCTCAGCAACTTCA----TCTCATTTCCACATTGAGGTCGATTAT-CTGC-TTTTTGCATCTCTTCAAGCAATCAAGGAGC---CTCTCGAACATAAAGGACACTTAACTGAGACTA----AAGACGGGCAATGATCTAACACTGCACCAGCAGATATCCTCAAAGAC---AAGCCGACTGTGGG-CTG----GAGCCCAGAG----------CA---GAGCCC-AG----TCTAGTGCTCTgctgtccactgcagcagtcactcgccaaatggggctatggagattta----------tgttgatcaaaataaaaaatccattccctcagctgccgtcgccgcatttcaaagg-ctcaacag-cacaggtggcagg-----------------agcacagatgaaggccgtttc-at----------------------c
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e canFam3.chr35            26280847 149 +  26524999 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=13923.000000
s hg38.chr6_GL000254v2_alt  1399915 1 +   4827813 a
s panTro5.chr6             30273366 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30503913 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     210460 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74882830 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30757170 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30052313 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     301599 1 +   1495729 a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     397789 1 -    863181 a
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29551687 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     228233 1 -    735854 a
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     189792 1 -   1829203 a
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30359776 1 + 171630274 a
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           183545 1 +    515838 a
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     816115 1 -   1771730 a
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     301576 1 -    383796 a
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      85976 1 -   1411461 a
i proCoq1.NW_012149775v1   C 0 I 25
s dasNov3.JH569887             6941 1 -     22419 a
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               280325 26 + 123392446 I
e mm10.chr17               58018469 2227 -  94987271 I
e canFam3.chr35            26280847 149 +  26524999 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=32584.000000
s hg38.chr6_GL000254v2_alt  1399916  4 +   4827813 ------------GTGG------
s panTro5.chr6             30273367  4 + 175400573 ------------GTGG------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30503914  4 + 173848474 ------------GTGG------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     210461  4 +   2037526 ------------GTGG------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74882831  4 + 122973662 ------------GTGG------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30757171  4 + 172585720 ------------GTGG------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30052314  4 - 170955103 ------------GTGG------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     301600  4 +   1495729 ------------GTGG------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     397790  4 -    863181 ------------GTGG------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29551688  4 -  71996105 ------------GTGG------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     228234  4 -    735854 ------------GTGG------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     189793  4 -   1829203 ------------GTGG------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30359777  4 + 171630274 ------------gcgG------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           183546  4 +    515838 ------------gtgG------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     816116  4 -   1771730 ------------gtgG------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     301577  4 -    383796 ------------gtgG------
i aotNan1.NW_018496904v1   C 0 C 0
s dasNov3.JH569887             6942 22 -     22419 ctgcaggaagttctggacagca
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               280325 26 + 123392446 I
e mm10.chr17               58018469 2227 -  94987271 I
e proCoq1.NW_012149775v1      85977 25 -   1411461 I
e canFam3.chr35            26280847 149 +  26524999 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=643202.000000
s hg38.chr6_GL000254v2_alt  1399920 52 +   4827813 CTGACCTAGCAGTATCCAGGGTAAAGGGTGTTCTGCTAGTAAAGCAA-GGTGG
s panTro5.chr6             30273371 52 + 175400573 CTGACCTAGCAGTATCCAGGGTAAAGGGTGTTCTGCtagtaaagcaa-ggtgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30503918 52 + 173848474 CTGACCTAGCAGTATCCAGGGTAAAGGGTGTTCTGCtagtaaagcaa-ggtgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     210465 52 +   2037526 CTGACCTAGCAGTATCCAGGGTAAAGGGTGTTCTGCtagtaaagcaa-ggtgg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74882835 52 + 122973662 CTGACCTAGCAGTATCCAGGGTAAAGGGTGTTCTGCTAGTAAAGCAA-GGTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30757175 52 + 172585720 CTGACCTAGCAATATCCAGGCTAAAGGGTGTTCTGCtagtaaagcaa-ggtgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30052318 52 - 170955103 CTGACCTAGCAATATCCAGGCTAAAGGGTGTTCTGCTAGTAAAGCAA-GGTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     301604 52 +   1495729 CTGACCTAGCAATATCCAGGCTAAAGGGTGTTCTGCtagtaaagcaa-ggtgg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     397794 52 -    863181 CTGACCTAGCAATATCCAGGCTAAAGGGTGTTCTGCtagtaaagcaa-ggtgg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29551692 52 -  71996105 CTGACCTAGCAATATCCAGGCTAAAGGGTGTTCTGCTAGTAAAGCAA-GGTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     228238 52 -    735854 CTGACCTAGCAATATCCAGGCTAAAGGGTGTTCTGCTAGTAAAGCAA-GGTGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     189797 52 -   1829203 CTGACCTAGCAATATCCAGGCTAAAGGGTGTTCTGCTAGTAAAGCAA-GGTGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30359781 51 + 171630274 CTGACCTCGCAATATCCAGGGTAAAGGGTGTTCTGCTGGTAAAGCAA--GTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           183550 52 +    515838 CTGACCTCACAATATCCAGGGTAAAGGGTGTTCTGCTAGTAAAGCAA-GGTGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     816120 52 -   1771730 CTGACCTCACGATATCCAGGGTAAAAGGTGTTCTGCTAGTAAAGCAA-GATGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     301581 52 -    383796 CTGACCTCACAATATCCAGAATAAAGGGTGTTCTGCTGGTAAACCAA-GGTGG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               280351 50 + 123392446 ctgACCTAGCAATATCCAGGGTAAAGGATGTTCTGCTAGTAAG--AA-GGTGG
i micMur3.chr6             I 26 C 0
s proCoq1.NW_012149775v1      86002 51 -   1411461 ctgACCTAGCAATATCCAGGGTAAAGGATGTTCTGataggaag--aagggtga
i proCoq1.NW_012149775v1   I 25 C 0
s dasNov3.JH569887             6964 46 -     22419 cCCATGCAGCACCATCCACAGCGAAG--CTCCCTGCTAGCACTGCTA-G----
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e canFam3.chr35            26280847 149 +  26524999 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=1096411.000000
s hg38.chr6_GL000254v2_alt  1399972 87 +   4827813 GCATCAGAATTATCACAACTTAAGCATAATATTCCTGAGGGCATCT-ATTTCCATTTATTTGCTTCTCTGCTTACCAACTCTGAACCC
s panTro5.chr6             30273423 87 + 175400573 gcatcagaattatcacaacttaagcataatattcttgagggcatct-atttccatttatttgcttctctgcttaccaactctgaaccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30503970 87 + 173848474 gcatcagaattatcacaacttaagcataatattcttgagggcatct-atttccatttatttgcttctctgcttaccaactctgaaccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     210517 87 +   2037526 gcatcagaattatcacaacttaagcataatattcctgaaggcatct-attttcatttatttgcttctctgcttaccaactctgaaccc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74882887 87 + 122973662 GCATCACAATTACCACAACTTAAGCATAATATTCCTGAGGGCATCT-ATTTCCATTTATTTGCTTCTCTGCTTACCAACTCTGAACCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30757227 87 + 172585720 gcatcagaattatcacaacttaagaataagattcctgagagcatcc-atttccatttatttgcttctctgcttgccaactctgaaccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30052370 87 - 170955103 GCATCAGAATTATCACAACTTAAGAATAAGATTCCTGAGAGCATCC-ATTTCCATTTATTTGCTTCTCTGCTTGCCAACTCTGAACCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     301656 87 +   1495729 gcatcagaattatcacaacttaagaataagattcctgagagcatcc-atttccatttatttgcttctctgcttgccaactctgaaccc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     397846 87 -    863181 gcatcagaattatcacaacttaagaataagattcctgagagcatcc-atttccatttatttgcttctctgcttgccaactctgaaccc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29551744 87 -  71996105 GCATCAGAATTATCACAACTTAAGAATAAGACTCCTGAGAGCATCC-ATTTCCATTTATTTGCTTCTCTGCTTGCCAACTCTGAACCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     228290 87 -    735854 GCATCAGAATTATCACAACTTAAGAATAAGATTCCTGAGAGCATCC-ATTTCCATTTATTTGCTTCTCTGCTTGCCAACTCTGAACCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     189849 87 -   1829203 GCATCAGAATTATCACAACTTAAGAATAAGATTCCTGAGGGCATCC-ATTTCCATGTATTTGCTTCTCTGCTTGCCAACTCTGAACCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30359832 87 + 171630274 ACATCAGAATTATCACAACTTAAGCATAATATTCCTGAGGGCATCC-ATTTCCATGTATTTGCATCTCTGCTCCTCTACTCTGGATCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           183602 87 +    515838 ACATCAGAATTATCACAACTTAAGCATAATAGTCCTGATGACATCC-ATTTCCATTTATTTGCATCTCTGCTCACCAACTCTGGATCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     816172 87 -   1771730 Acatcagaattatcacaacttaagcataatgttcctgatgacatcc-atttccatttatttgcatctctgctcaccaactccggattc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     301633 87 -    383796 ACATCAGAATTATCACAACTTAAGCATAATATTCGTGAGTGCATCC-ATTTCCATTTATTTGCGTCTCTGCTCACCAACTCTGAATCC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               280401 88 + 123392446 Gcatcaggattgtcacaatttaagcataatattccttaggatatccaatttccacttctctgcttctctgctcaccaactctgaatct
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      86053 88 -   1411461 gcatcaggattgtcacaatttaagcataatattccttaggatatccaatttccacttctctgtttctctgctcaccaactctgaatct
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr35            26280996 73 +  26524999 GCCTCAGGACCAGCACAGCTTGAG------------GAGGGGTCTC-ATTTCCCTT--CCTGATGCTCCACTCACCGACTCTCAAGCC
i canFam3.chr35            I 149 C 0
s dasNov3.JH569887             7010 74 -     22419 -CCTCGGG------ACAGCTTACCCTCAATATTCTT-ACGGCATCA-TCTTCCATT--TCTGATTTTCTACT---CAACTCTGAATCC
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I
e otoGar3.GL873550           215659 12540 +  18854210 I

a score=3352522.000000
s hg38.chr6_GL000254v2_alt  1400059 251 +   4827813 CTGCTTTCCCAACTTTCTGGTATCT----GGGAAGAAAATAAACTGACTAGAAAAC--ACAAATTTCATTCTGCTTGACAACTGTAATTCTCAC--TAAATTTATAAATTTGCTTTCTGATTTATCAATG------AGCGCCAAAAACATG--AGTTTGAGAAAGGC----------------TGAGTTTGATTATCCCTGAGTGGATCCAAGCA--TTAGGAAGGTCTTGCTTAAGTGGGTGATAGGAAGTGACAAAA---AAA-GCTGGAAGAAACATGACAGACTA
s panTro5.chr6             30273510 251 + 175400573 ctgctttcccaactttctggtatct----gggaagaaaataaactgactagaaaac--acaaatttcattctgcttgacaactgtaattctcac--taaatttataaatttgttttctgatttatcaatg------agtGCCAAAAACATG--AGTTTGAGAAAGGC----------------TGAGTTTGATTATCCCCGAGTGGATCCAAGCA--TTAGGAAGGTCTTGCTTAAGTGGGTGATAGGAAGTGACAAAA---AAA-GCTGGAAGAAACATGACAGACTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30504057 252 + 173848474 ctgctttcccaactttctggtatct----gggaagaaaataaactgactagaaaac--acaaatttcattctgcttgacaactgtaattctcac--taaatttataaatttgttttctgatttatcaatg------agtGCCAAAAACATG--AGTTTGAGAAAGGC----------------TGAGTTTGATTATCCCCGAGTGGATCCAAGCA--TTAGGAAGGTCTTGCTTAAGTGGGTGATAGGAAGTGACAAAA---AAAGGCTGGAAGAAACATGACAGACTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     210604 251 +   2037526 ctgctttcccaactttctggtatct----gggaagaaaataaactgactagaaaac--acaaatttcattctgcttgacaactgtaattctcac--taaatttataaatttgctttctgatttatcaatg------agtGCCAAAAACATG--AGTTTGAGAAAGGC----------------TGAGTTTGATTATCCCTGAGTGGATCCAAGCA--TTAGGAAGGTCTTGCTTAAGTGGGTGATAGGAAGTGACAAAA---AAA-GCTGGAAGAAACATGACAGACTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74882974 267 + 122973662 CCGCTTTCCCAACTTTCTGATATCT----GGGAAGAAAATCAACTGACTAGAAAAC--ATAAATTTCATTCTGCTTGACAACTGTAATTCTCAC--TAAATTTATAAATTTGCTTTCTGATTTATCAATG------AGAGCCAAAGGCATG--AGTTTGAGAAAGGCTGAGTTTGAGAAAGGGTGAGTTTGATTTTCCCTGAGTGGATCCAAGCA--TTAGGAAGGTCTTGCTTAAGTGGGTGATAGAAAGTGACAAAA---AGA-GCTGGAAGAAACATGAGAGACTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30757314 251 + 172585720 ctgctttcccaattttctagtatct----ggaaagaaaacaaactgactaaaaaac--ataaatttcattctgcttgacaactgtaattctcac--taaatttataaatttgctttctgatttatcaatg------agtgacaaaggcatg--agtttgagaaagga----------------tgagtttgattacccctgagtggatccAAACA--TTAGGAAGGTCTTGCTTAAGTGGGTGACAAGAAGTGACAAAA---AAA-GCTGGAAGAAACATGAGAGACTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30052457 251 - 170955103 CTGCTTTCCCAATTTTCTAGTATCT----GGAAAGAAAACAAACTGACTAAAAAAC--ATAAATTTCATTCTGCTTGACAACTGTAATTCTCAC--TAAATTTATAAATTTGCTTTCTGATTTATCAATG------AGTGACAAAGGCATG--AGTTTGAGAAAGGA----------------TGAGTTTGATTACCCCTGAGTGGATCCAAACA--TTAGGAAGGTCTTGCTTAAGTGGGTGACAAGAAGTGACAAAA---AGA-GCTGGAAGAAACATGAGAGACTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     301743 251 +   1495729 ctgctttcccaattttctagtatct----ggaaagaaaacaaactgactaaaaaac--ataaatttcattctgcttgacaactgtaattctcac--taaatttataaatttgctttctgatttatcaatg------agtgacaaaggcatg--agtttgagaaagga----------------tgagtttgattacccctgagtggatccAAACA--TTAGGAAGGTCTTGCTTAAGTGGGTGACAAGAAGTGACAAAA---AGA-GCTGGAAGAAACATGAGAGACTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     397933 251 -    863181 ctgctttcccaattttctagtatct----ggaaagaaaacaaactgactaaaaaac--ataaatttcattctgcttgacaactgtaattctcac--taaatttataaatttgctttctgatttatcaatg------agtGACAAAGGCATG--AGTTTGAGAAAGGA----------------TGAGTTTGATTACCTCTGAGTGGATCCAAACA--TTAGGAAGGTCTTGCTTAAGTGGGTGACAGAAAGTGACAAAA---AGA-GCTGGAAGAAACATGAGAGACTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29551831 251 -  71996105 CTGCTTTCCCAATTTTCTAGTATCT----GGAAAGAAAACAAACTGACTAAAAAAC--ATAAATTTCATTCTGCTTGACAACTGTAATTCTCAC--TAAATTTATAAATTTGCTTTCTGATTTATCAATG------AGTGACAAAGGCATG--AGTTTGAGAAAGGA----------------TGAGTTTGATTACCCCTGAGTGGATCCAAACA--TTAGGAAGGTCTTGCTTAAGTGGGTGACAGAAAGTGACAAAA---AGA-GCTGGAAGAAACATGAGAGACTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     228377 251 -    735854 CTGCTTTCCCAATTTTCTAGTATct----ggaaagaaaacaaactgactaaaaaac--ataaatttcattctgcttgacaactataattctcac--taaatttataaatttgctttctgatttatcaatg------agtGACAAAGGCATG--AGTTTGAGAAAGGA----------------TGAGTTTGATTACCCCTGAGTGGATCCAAACA--TTAGGAAGGTCTTGCTTAAGTGGGTGACAGAAAGTGACAAAA---AGA-GCTGGAAGGAACATGAGAGACTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     189936 241 -   1829203 CTGCTTTCCCAATTTTCTAGTATct----ggaaagaaaacaaactgactaaaaaac--atacatttcattctgcttgacaactgtaattctcac--taaatttataaatttgctttctgatttatcaatg------agtaacaaaggcatg--agtttgagaaagga----------------tgagtttgattacccctgagtggatccAAACA--TTAGGAAGGTCTTGCTTAAGTGGGTGACAGAAAGTGACAAAA---AGA-GCTGGAAGAAACA----------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30359919 251 + 171630274 CTGCTTTTCCAACTTTCTGGTATGT----TGGAAGAAAAT-AACTGACTAGAAAAC--ATAAATTTCATTCTGCTTTACAAGTGTAATTCTCACT-TAAATTTATAAATTTACTTTCTGATTTATCAGTG------AGTGCTGGAGGCCCG--AGTTTGAGAAAGGC----------------TAAGTTTGATTACCCCTGAATAGGTCCAAACA--TCAGGAAGGTCTTGCTTAAGTGGGTGACAGAAAGTGACAAAA---AGA-GCTGGAAGGAACGTGAGAGACTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           183689 246 +    515838 CTGCTTTTCCAACTTTCTGGTATGT----TGGAAGAAAAT-AACTGATTAGGAAAC--ATATATTTCATTCTGCTTTACAAGTGTAATTCTCACT-TAAGTTTATAAA-----TTTCTGATTTATCAATG------AATGCTGAAGGCCCG--AGTTTCAGAAAGGC----------------TATGTTTGATTACCCTTGAGTAGATCCAAACA--TTAGGAAGGTCTTGCTTAAGCGGGTGATAGAAAGTGACAAAA---AGA-GCTGGAAGGAACGTGAGAGACTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     816259 250 -   1771730 ctgcttttccaactttctggtatgt----tggaagagaat-aactgattagaaaac--ataaatttcattc-attttacaagtgtaattctcact-taaatttataaatttcctttctgatttatcaatg------agtGCTGAAGGCCCG--AGTCTGAGAAAGGC----------------TAAGTTTGATTACCCCTGAGTGGATCCAAACA--TTAGGAAGGTCTTGCTTAAGTGGGTGATAGAAAGTAACAAAA---AGA-GCTGGAAGGAAGGTGAGAGACTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     301720 251 -    383796 CTGCTTTTCCAACTTTTTGGTATTT----TGGAAGAAAAT-AACTGACTAGAAAAC--ATAAATTTCATTCTGCTTTACAAGTGTAATTCTCACT-TAAATTTATAAATTTCCTTTCTGATTTATCAATG------AGTGCTGAAGGCAAG--AGTTTGAGAAAGGC----------------TAAGTTTGATTACCCCTGAGTAGATCCAAACA--TTAGGAAGGTCTTGCTTAAGTGGGTGAAAGAAAGTGACAAAA---AGA-GCTGGAAGGAACATGAGAGACTA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               280489 251 + 123392446 ctactttcccacctttctggtattt----ggaaagaaaatgaactgactggaaaac-aataaatttcatttagcttggcaattaaaattctcat--caaattcataaatttgatttctgatttataaatg------agtATTGGAGGCATG--AATTTGAAAGAGGC----------------TGAGTTTGATTACCC--TGGTGGATCCAAACA-CTGAGAAGGGTCTTGCTTAAGTGTGTGAGAGAAAGTGGTGAAG---AGA-GCTGGAAGAAACAGGACATATTA
i micMur3.chr6             C 0 I 27
s proCoq1.NW_012149775v1      86141 251 -   1411461 ctactttcccagctttctggtattt----gggaagaaaatgaactgactggaaaat-aataaatttcattctgcttggcaattaaaattctcat--taaattcataaattttctttctgatttataaatg------agCATTGGAGGCATG--AATCTGAAAGAGGC----------------TGAGTTTGATTACCC--AAGTGGATCCAAACA-CTGAGAAGGGTCTTGCTTAAGTGTGTGACAGAAAGCGATAAAG---AGA-GCTGGAAGAAACATGACAGACTA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           228199 256 +  18854210 ccacTTTCCCAATTTTCTGGTACACACAGGGGAAGAAAACGAACTGACTGGAAAAC-AATAAATTTCTTTCTGCTTGGCAATTAAAATTCTTAC--TACATTCCTAAATTTACTTCCTGATTTATAAATG------AGTATTGGAGGCATG--AATTTGAAAGAGGC----------------TGAGTTTGATTACCC--ACATGGGTCCAAACATTTGAGAAGGGTCTTGCTTAAGTGACTAATAGAAAGTGATGAAA---AGA-GCTGGAAGAAACATAACAGATTA
i otoGar3.GL873550         I 12540 C 0
s canFam3.chr35            26281069 194 +  26524999 -CACCTTCCTTGCGTGTTGGTGTCT----GGAGAGACAATGTACTGAAAGTGAAACCAATACATTTCATTCTGCTTGGTGATTACAACTCTCAC--TCAATGCAGGAATTTGTTTCCTGAGTTATGAGTG-----------------------------------------------------TGGG------------------------------TTGGAAAGATGTTGTTTCCATGGGCGACAGAAAGTGACACAT---GGA-GCTGGAACCAACCTGAGCAGTC-
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             7084 254 -     22419 CTGATTTCCCAACTTTCTCGTATCT----GAGAAGAGACTCAACTGACTGGAAAAT-AACCCCTCTCATTCTGCTTGACCGTCTTGATTCTCACTGTCACTTCCTAAACCTGCGTTCTGATTTGTAAGTGTTGGAAGGCAGTGTGGGCATGCTCATGTATGAGAGGG----------------CAAGCATGGTTACCCTTAGG--GGACCAGATG--CCGGGAAGGT----CTTAGGTGCGTGATGGGCAGTGACAGGACGTGGG-GCTGTGAGGGACA-----GACTA
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I

a score=175878.000000
s hg38.chr6_GL000254v2_alt  1400310 19 +   4827813 TAATACTCCCTTCCCTAAC
s panTro5.chr6             30273761 19 + 175400573 TAATACTCCCTTCCCTAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30504309 19 + 173848474 TAATACTCCCTTCCCTAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     210855 19 +   2037526 TAATACTCCCTTCCCTAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74883241 19 + 122973662 TAATACTCCCTTCCCTAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30757565 19 + 172585720 TTATACTCTCTTCCCTAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30052708 19 - 170955103 TTATACTCTCTTCCCTAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     301994 19 +   1495729 TTATACTCTCTTCCCTAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     398184 19 -    863181 TTATACTCTCTTCCCTAAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29552082 19 -  71996105 TTACACTGTCTTCCCTAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     228628 19 -    735854 TTATACTCTCTTCCCTAAC
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30360170 19 + 171630274 TTACACTCCCTTCTCTAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           183935 19 +    515838 TTACACTCCCTTCTCTGAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     816509 19 -   1771730 TTACACTCCCTTCTCTAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     301971 19 -    383796 TTACACTCCCTTCTCTAAA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      86392 18 -   1411461 CTACCCTTC-CTCTCTGAC
i proCoq1.NW_012149775v1   C 0 I 6
s otoGar3.GL873550           228455 19 +  18854210 CTACACTTCTTTCTGTGTC
i otoGar3.GL873550         C 0 I 6
s canFam3.chr35            26281263 15 +  26524999 ----ACTACTTACTGAGAC
i canFam3.chr35            C 0 I 3
s dasNov3.JH569887             7338 19 -     22419 CGGCACTCCCTTCTCTGCT
i dasNov3.JH569887         C 0 I 4
e micMur3.chr6               280740 27 + 123392446 I
e mm10.chr17               58018469 2227 -  94987271 I
e colAng1.NW_012115577v1     190177  0 -   1829203 C

a score=1308744.000000
s hg38.chr6_GL000254v2_alt  1400329 108 +   4827813 CTTCCTCC-TTTTCAccctgctcacctgggccaggttagaatccgt--cctttgtaaagcaccctg--------tacctttc----tattgtaacctttat-ttactacattatctgtttatag
s panTro5.chr6             30273780 104 + 175400573 CTTCCTCC-TTTTCAccctgctcacctgggccaggttagaatccgt--cctttgtaaagcaccctg--------tacctttc----tattgtaacc----t-ttactacattatctgtttatag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30504328 104 + 173848474 CTTCCTCC-TTTTCAccctgctcacttgggccaggttagaatccgt--cctttgtaaagcaccctg--------tacctttc----tattgtaacc----t-ttactacattatctgtttatag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     210874 104 +   2037526 cttcctcc-ttttcatcctgctcacctgggccaggttagaatccgt--cctttgtaaagcaccctg--------tacctttc----tattgtaacc----t-ttactacattatctgtatatag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74883260 104 + 122973662 CTTCCTCC-TTTTCAccctgctcacctgggccaggttagaatccgt--cctttgtaaagcaccctg--------tacctttc----tattgtaacc----t-ttactacattatctgtttatag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30757584 104 + 172585720 CTTCCTCC-TTTTCAccctgctcacctaagccaggttagaatccgc--cctttgcaaagcaccctg--------tacctttc----tattgtaacc----t-ttactacattatctgtttatac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30052727 104 - 170955103 CTTCCTCC-TTTTCAccctgctcacctaagccaggttagaatccgc--cctttgcaaagcaccctg--------tacctttc----tattgtaacc----t-ttactacattatctgtttatac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     302013 104 +   1495729 CTTCCCCC-TTTTCAccctgctcacctaagccaggttagaatccgc--cctttgcaaagcaccctg--------tacctttc----tattgtaacc----t-ttactacattatctgtttatag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     398203 104 -    863181 CTTCCTCC-TTTTCAccctgctcacctaagccaggttagaatccgc--cctttgcgaagcaccctg--------tacctttc----tattgtaacc----t-ttactacattatctgtttatac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29552101 104 -  71996105 CTTCCTCC-TTTTCAccctgctcacctaagccaggttagaatccac--cctttgcaaagcaccctg--------taccttcc----tattgtaacc----t-ttactatactatctgtttatac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     228647 104 -    735854 CTTCCTCC-TTTTCAccctgctcacctaagccaggttagaatccgc--cctttgcaaagcaccctg--------tacctttc----tattgtaacc----t-ttactacattatctgtttatag
i manLeu1.NW_012107142v1   C 0 I 6158
s colAng1.NW_012115577v1     190177  79 -   1829203 --------------------------TAAGCCAGGTTAGAATCCGC--CCTTTGCAAAGCACCGTG--------TACCTTTC----TATTGtaacc----t-ttactacattatctgtttatag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30360189 102 + 171630274 CTTTCTCC-TTTTCACCCTGCTCACCTGAGCCAGGTTAGAATCCGT--CCTTTGTACAGCACCCTG--------TACCTTTC----TATGGCAACC----T-TTACTACATTA--TGTTTGTAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           183954 101 +    515838 CTTTCTCC-TTTCCAccctgctcacctgagccaggttagaatccgt--cctttgtacagcaccctg--------tacc-ttc----tattgcaacc----t-ttactacatta--cgtttgtag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     816528 102 -   1771730 CTTTCTCC-TTTTCAccctgctcacctgagccaggttagaatccgt--cctttgtacagcaccctg--------tacctttc----tattgcaacc----t-ttactacatta--tgtttgtag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     301990 102 -    383796 CTTTCTCC-TCTTCACCCTGCTCACCTGAGCTAGGTTAGAATCCGT--CCTTTGTACAGCACCCTG--------TACCTTTC----TATTGCAACC----T-CTACTACATTA--TGTTTGTAG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               280767 103 + 123392446 CTTCCTCC-TTTTCAccctgctcacctaggccaggttagagtcctt--cctttgtacagcaccctg--------t-cccctc----tatcataacc----t-ttgccacattacctgtttatag
i micMur3.chr6             I 27 C 0
s proCoq1.NW_012149775v1      86416 102 -   1411461 CTTCCTCC-TTTTCAccctgctcacctagaccaggttagaatcatt--cctttgtacagcaccctg--------t-cccctc----tatcataacc----t-ttgccata-tacctgtttatag
i proCoq1.NW_012149775v1   I 6 C 0
s otoGar3.GL873550           228480 106 +  18854210 CTTCCTCCTTTTTCACCCTGCTTACCT-GGCCAGGTTAGAATCCTTACACTGTATatagcacccta--------tacccctc----tatcataacc----t-ttaacacattttctatttatgg
i otoGar3.GL873550         I 6 C 0
s canFam3.chr35            26281281 109 +  26524999 ---------AGCCCTTCTTGCTCAGCGGGGCCTGGTGGGGCATCCC--TCCCCGCACATCACCTAGGCGGTCACTACCCTCCGGCTCAGTGGGACC----TGGTAGGGCGTCACCCTTGCATAG
i canFam3.chr35            I 3 I 6
s dasNov3.JH569887             7361 103 -     22419 CTTCTTCC-TTctcgccctgccc--ccaggccgggttagg---ccc--tcatcttagagcacccag--------ggcacacc----tgtcttacccccacc-ccaccagcccatctgctgagaa
i dasNov3.JH569887         I 4 C 0
e mm10.chr17               58018469 2227 -  94987271 I

a score=1219114.000000
s hg38.chr6_GL000254v2_alt  1400437 84 +   4827813 agtgatctatgccattagttgaaaattattcaaggg---cagagact--tctctttattcaccttcagtaactaacataatgcct-------agca
s panTro5.chr6             30273884 84 + 175400573 agtgatctatgccattagttgaaaattattcaaggg---cagagact--tctctttattcaccttcagtaactaacataatgcct-------agca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30504432 84 + 173848474 agtgatctatgccattagttgaaaattattcaaggg---cagagact--tctctttattcaccttcagtaactaacataatgcct-------agca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     210978 84 +   2037526 agtgatctatgccattagttgaaaattattcaaggg---cagagact--tctctttattcaccttcagtaactaacataatgcct-------agca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74883364 84 + 122973662 agtgatctatgccattagttgaaaactattcaaggg---cagagact--tctctttattcaccttcagtaactaacataatgcct-------agcg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30757688 84 + 172585720 agtgatctatgccattagctgaaagctattcaaggg---cagagact--tctctttattcaccttcagtaactaacacaatgcct-------agca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30052831 84 - 170955103 agtgatctatgccattagctgaaagctattcaaggg---cagagact--tctctttattcaccttcagtaactaacacaatgcct-------agca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     302117 84 +   1495729 agtgatctatgccattagctgaaagctattcaaggg---cagagact--tctctttattcaccttcagtaactaacacaatgcct-------agca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     398307 84 -    863181 agtgatctatgccattagctgaaagctattcaaggg---cagagact--tctctttattcaccttcagtaactaacacaatgcct-------agca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29552205 84 -  71996105 agtgatctatgccattagctgaaagctattcaaggg---cagagact--tctctttattcaccttcagtaactaacacaatgcct-------agca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     234909 84 -    735854 agtgatctatgccattagctgaaagctattcaaggg---cagagact--tctctttattcaccttcagtaactaacacaatgcct-------agca
i manLeu1.NW_012107142v1   I 6158 C 0
s colAng1.NW_012115577v1     190256 84 -   1829203 agtgatctatgccattagctgaaagctattcaaggg---cagagact--tctctttattcaccttcagtaattaacacaatgcct-------agca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30360291 89 + 171630274 AGTGATCTATGCCATTA--CGAAAACTAGTCAAGGG---CAGAGACT--TCTCTTTATTCACCTTCAGTAACTAATACAATGCCTAGGGAAAAGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           184055 91 +    515838 agtgatctatgccgttagttgaaaactagtcaaggg---cagagact--tctctttattcaccttcagtaactaatacaacgcctaggaggaagca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     816630 93 -   1771730 agtgatctatgccattagttgaaaactagtcaagag---cagagacttctctctttattcaccttcagtaactaatacaacacctacgaggaagca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     302092 91 -    383796 AGTGATCTATGCCATTAGTTGAAAACTAGTCAAGGG---CAGAGACT--TCTCTTTATTCACCTTCAGTAACTAATACAACACCTAGGAGGAAGCA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               280870 84 + 123392446 agtgacctctgccatcagctgtaaactgctcaaggg---cagaggtg--tctctttattcaccctcagtgactaacacgatgcct-------agca
i micMur3.chr6             C 0 I 6
s proCoq1.NW_012149775v1      86518 84 -   1411461 agtgagctatgccattagctgtaaactactcaaggg---cagagaca--tctctttattcactctcagtaactaacacaatgcct-------agca
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           228586 87 +  18854210 aatgggctataccattagttgtaaactattcaaggacttcagagact--tctctttattcaacctcagtaactaacacaatgccc-------agca
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26281396 59 +  26524999 AGTG------GCCACCACATGTATGCTACCCAAGGG---CAGGGACC--TCATACTGGCCACATGGCGCA--------------------------
i canFam3.chr35            I 6 C 0
s dasNov3.JH569887             7464 84 -     22419 ggtgtttgacagcactggttgtaaactactcaaggg---cagggcct--gctctttattcactcccagtaacaaacacaaggcct-------ggca
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I

a score=209664.000000
s hg38.chr6_GL000254v2_alt  1400521 20 +   4827813 tgtaggaggctctcaaAATT
s panTro5.chr6             30273968 20 + 175400573 tgtaggaggctctcaaAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30504516 20 + 173848474 tgtaggaggctctcaaaatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     211062 20 +   2037526 tgtaggaggctctcaaAATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74883448 20 + 122973662 tgtaggaggctctcaaaatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30757772 20 + 172585720 tgtagaaggctctcaaAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30052915 20 - 170955103 tgtagaaggctctcaaAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     302201 20 +   1495729 tgtagaaggctctcaaAATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     398391 20 -    863181 tgtaggaggctctcaaAATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29552289 20 -  71996105 tgtaggaggctctcaaaatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     234993 20 -    735854 tgtaggaggctctcaAAATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     190340 20 -   1829203 tgtaggaggctgtcaaaatt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30360380 15 + 171630274 TGTAGGAGGCTCTC-----T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           184146 15 +    515838 tgtagtaggctctc-----t
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     816723 15 -   1771730 tgtaggaggctctc-----t
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     302183 15 -    383796 CGTAGGAGGCTCTC-----T
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      86602 20 -   1411461 catgagaggttctcaaAATT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           228673 20 +  18854210 taaaggaggttctcaaaatt
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26281455 19 +  26524999 CACAGGACACTCTCAGGTG-
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             7548 20 -     22419 cataggacgttctcaaaatg
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               280954  6 + 123392446 I
e mm10.chr17               58018469 2227 -  94987271 I

a score=2034133.000000
s hg38.chr6_GL000254v2_alt  1400541 157 +   4827813 AAGTTTCTCATTCAAATAAATTGTACAGAGCAAGTTACACTTTTAGGGGCTGGCTAGTA-GTTATCTGATGAAGGTATG------ATATTAAAGACCATAT----ACTAAACTATAGCAATCTCATCAAAATAA-CCTTGGAGGGCT-GGGAACAGGGAGAATAAGAGAA
s panTro5.chr6             30273988 157 + 175400573 AAGTTTCTCATTCAAATAAATTGCACAGAGCAAGTTACACTTTTAGGGGCTGGCTAGTA-GTTATCTGATGAAGGTATG------ACATTAAAGACCATAT----ACTAAACTATAGCAATCTCATCAAAATAA-CCTTGGAGGGCT-GGGAGCAGGGAGAATAAGAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30504536 157 + 173848474 aagtttctcattcaaataaatTGCACAGAGCAAGTTACATTTTTAGGGGCTGGCTAGTA-GTTATCTGATGAAGGTATG------ATATTAAAGACCATAT----ACTAAACTATAGCAATCTCATCAAAATAA-CCTTGGAGGGCT-GGGAGCAGGGAGAATAAGAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     211082 157 +   2037526 AAGTTTCTCATTCAAATAAATTGTACAGAGCAAGTTACACTTTTAGGGGCTGGCTAGTA-GTTATCTGATGAAGGTAGG------ATATTAAAGACCATAT----ACTAAACTATAGCAATCTCATCAAAATAA-CCTTGGAGGGCT-GGGAGCAGGGAGAATAAGAGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74883468 157 + 122973662 aagtttctcatacaaataaatTGTACAGGGCAAGTTACACTTTTAGGGCCTAGCTAGTA-GTTATCTGATGAGGGCATG------ATATTAAAGACCATAT----ACTAAACTATAGCAATCTCATCAAAATAA-CCTTGGAGGGCT-GGGAGCAGGGAGAATAAGAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30757792 157 + 172585720 AAGTTTCTCATACAACTAAATTGTACAGGGCAAGTTACACTTTTAGGGCCTGGCTAGTA-GTTATCTGATGAAGGTATG------ATATTAAAGACCATAT----ATTAAACTATATCGATCTCATCAAAATAA-CCTTGGAGGGCT-GGGAGCAGGGAGAATAAGAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30052935 157 - 170955103 AAGTTTCTCATACAACTAAATTGTACAGGGCAAGTTACACTTTTAGGGCCTGGCTAGTA-GTTATCTGATGAAGGTATG------ATATTAAAGACCATAT----ATTAAACTATATCGATCTCATCAAAATAA-CCTTGGAGGGCT-GGGAGCAGGGAGAATAAGAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     302221 157 +   1495729 AAGTTTCTCATACAACTAAATTGTACAGGGCAAGTTACACTTTTAGGGCCTGGCTAGTA-GTTATCTGATGAAGGTATG------ATATTAAAGACCATAT----ATTAAACTATATCGATCTCATCAAAATAA-CCTTGGAGGGCT-GGGAGCAGGGAGAATAAGAGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     398411 157 -    863181 AAGTTTCTCATACAACTAAATTGCACAGGGCAAGTTACACTTTTAGGGCCTGGCTAGTA-GTTATCTGATGAAGGTATG------ATATTAAAGACCATAT----ATTAAACTATATCAATCTCATCAAAATAA-CCTTGGAGGGCT-GGGAGCAGGGAGAATAAGAGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29552309 157 -  71996105 cagtttctcatacaaataaatTGTACAGGGCAAGTTACACTTTTAGGGCCTGGCTAGTA-GTTATCTGACGAAGGTATG------ATATTAAAGACCATAT----ACTAAACTATATCAATCTCATCAAAATAA-CCTTGGAGGGCT-GGGAGCAGGGAGAATAAGAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     235013 157 -    735854 AAGTTTCTCATACAACTAAATTGTACAGGGCAAGTTACACTTTTAGGGCCTGGCTAGTA-GTTATCTGACGAAGGTATG------ATATTAAAGACCACAT----ATTAAACTATATCAATCTCATCAAAATAA-CCTTGGAGGGCT-GGGAGCAGGGAGAATAAGAGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     190360 154 -   1829203 --gtttctcatacaaataaaCTGTACAGGGCAAGTTACACTTTTA-GGCCTGGCTAGTA-GTTATCTGATGAAGGTATG------ATATTAAAGACCATAT----ACTAAACTATATCAATCTCATCAAAATAA-CCTTGGAGGGCT-GGGAGCAGGGAGAATAAGAGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30360395 159 + 171630274 AAGTTTCTCATACAAATAACTTGTATGGGGCAAATTACATTTTTAGGGCCTGGCTAGTA-GTTCTCTGATGAAGGTATG------ATATTAAAGACAATAT----ACTAAAAGATAGCAATCTCATCAAAATAACCCTTGGAGAGCTGGGGAGCAGGGAGAATAAAAGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           184161 159 +    515838 aagtttctcatacaaataaatTGTATGGGGCAAGTTACATTTTTAGGGCCTGGTTAGTA-GTTCTTTGATGAAGGTATG------ATATTAAAGACAATAT----ACTAAACAATAGCAATCTCATCAAAATAACCCTTGGAGGGCTGGGGAGCAGGGAGAATAAAAGAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     816738 159 -   1771730 aagtttctcatacaaataaatTGTACGGGGCAAGTTACATTTTTAGGGCCTGGCCAGTA-GTTCTCTGATGAAGGTATG------ATATTAAAGACAATAT----AGTAAACGATAGCAAACTCATCAAAATAACCCTTGGAGGGCTGGGGAGCAGGGAGAATAAAAGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     302198 155 -    383796 AAGTTTCTCATACAAA----TTGTACAGGGCAAGTTACATTTTTAGGGCCTGGCTAGTA-GTTCTCTGATGAAGGTATG------ATATTAAAGACAAAAT----ACTAAATGATAGCAATCTCATCAAAATAACCCTTTGAGGGCTGGGGAGCAGGGAGAATAAAAGAA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               280960 166 + 123392446 AACTTTCTCCTCCAAATAAATTGTATGGTGCAAATTCCACTTTTAGGGCCTGGTTAGTA-GTTCTTTAATGAAGGCATGAACAGGAAATTAAAGGCCAGATATATACTGAACTATCGCAATCTCATCGAAATAA-CCTTGGCGGGTT-GTGAGCAGGGAGAA-ATGAGAG
i micMur3.chr6             I 6 C 0
s proCoq1.NW_012149775v1      86622 166 -   1411461 AACTTTCTCCTACAGATAAATTGTATGGTGCAAATTCTACTTTTAGGGCCTGGTTAGTA-GTTCTTTAATGAAGGCATGAACAAGAAATTAAAGGCCAGATACATACTGAACTATAGCAATCTCATGGAAATAA-CCTTGGTGGGTT-GGGAGCAGGGAGAA-ATGAGAG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           228693 157 +  18854210 aagtgtctccaacaaataaatTACATGGTGCAAGTTCTACTTTTAGAGCCTGGTTACTA-GTTCTTTAATGAAGGCATGGATGATAAATTAAAGGCCAGAT---------ACTATGGCAATCTCATCAAAATAA-CCTGGGAGGATT-GGGAGCAAGGAAAA-AAGAGAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26281474 134 +  26524999 CAGTTGCTCACACAAA----CTGTGGGTTGCAG--CATATGCTGAGGGCCTGGTCAGTA-GTTCCCC-ATAAAGCTGTG---------------ACAATAG----GCGGACCTACAGAGATCTCA-CGTGATAG--CTTCCAGGGCT-GGGAGTAGGGGGAGTGG-----
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             7568 121 -     22419 -------------------------------AAG--------TTAGGGTCTGGTTAGTAGGCCCTCTGGTGAAGGCAGGGGCAGGAAAT--AAGACCACAT----ACTGATGTATAGCAGGCTCACCAGGACAA-CTCAG--GGGTC-GGGAGCAGGGAGAATGGAACAG
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58018469 2227 -  94987271 I

a score=88169.000000
s hg38.chr6_GL000254v2_alt  1400698 6 +   4827813 GTAGAT
s panTro5.chr6             30274145 6 + 175400573 GTAGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30504693 6 + 173848474 GTAGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     211239 6 +   2037526 GTAGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74883625 6 + 122973662 GCATAT
i nomLeu3.chr1a            C 0 I 578
s rheMac8.chr4             30757949 6 + 172585720 GCAGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30053092 6 - 170955103 GCAGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     302378 6 +   1495729 GCAGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     398568 6 -    863181 GCAGAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29552466 6 -  71996105 GCAGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     235170 6 -    735854 ACAGAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     190514 6 -   1829203 GCAGAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30360554 6 + 171630274 GCAGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           184320 6 +    515838 GCAGAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     816897 6 -   1771730 GCAGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     302353 6 -    383796 GCAGTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               281126 6 + 123392446 GCAGAT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      86788 6 -   1411461 GCAGAT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           228850 6 +  18854210 GCAAAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58020696 6 -  94987271 GCAAAT
i mm10.chr17               I 2227 C 0
s dasNov3.JH569887             7689 6 -     22419 GCAGAT
i dasNov3.JH569887         C 0 C 0
e canFam3.chr35            26281608 0 +  26524999 C

a score=411323.000000
s hg38.chr6_GL000254v2_alt  1400704 32 +   4827813 TAGAACAATTCTTTATTCACCACCATTGCCCA
s panTro5.chr6             30274151 32 + 175400573 TAGAATAATTCTTTATTCACCACCATTGCCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30504699 32 + 173848474 TAGAATAATTCTTTATTCACCACCATTGCCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     211245 32 +   2037526 TAGAATAATTCTTTATTCACCACCATTGCCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74884209 32 + 122973662 TAGAATAATTCTTTATTTACCACCATTGCCCA
i nomLeu3.chr1a            I 578 C 0
s rheMac8.chr4             30757955 31 + 172585720 TAGAATAATTCTTTATTCACC-CCATCGCCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30053098 31 - 170955103 TAGAATAATTCTTTATTCACC-CCATCGCCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     302384 31 +   1495729 TAGAATAATTCTTTATTCACC-CCATCGCCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     398574 31 -    863181 TAGAGTAATTCTTTATTCACC-CCATCGCCCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29552472 31 -  71996105 TAGAATAATTCTTTATTCACC-CCATCACCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     235176 31 -    735854 TAGAATAATTCTTTATTCACC-CCATCGCCCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     190520 31 -   1829203 TAGAATAATTCTTTATTCACC-CCATCGCCCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30360560 32 + 171630274 TAGAACAATTCTTCATTCACCATCATTGCCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           184326 32 +    515838 TAGAACAATTCTTTATTCACCATCATTGCCCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     816903 32 -   1771730 TAGAACAGCTCTTTATTCACCGTCATCGCCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     302359 32 -    383796 TAGAACAATTCTTTATTCACCATCATTGCCCA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               281132 29 + 123392446 TAGTACAATTCCTTATTCATC---ATTGCCCA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      86794 29 -   1411461 TAGAACAATTCCTTACTTACC---ACTGCCCA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           228856 29 +  18854210 TAGAACAATTCCTTATTCACC---ATTGCCCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58020702 28 -  94987271 GAGAAAAATCCCTCCTTCACCATTATTG----
i mm10.chr17               C 0 C 0
s canFam3.chr35            26281608 31 +  26524999 TGGAGCA-TCCCTTGCTCAGCATCACTGACCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             7695 25 -     22419 GAGAACGATTCCTCA-------CTACGGCTCA
i dasNov3.JH569887         C 0 C 0

a score=1467802.000000
s hg38.chr6_GL000254v2_alt  1400736 116 +   4827813 ACCCCGGTCTT-----------------------TCCAAGTGGGGAAACTAACATTTATGAAACAACTAATACATACCTACACTTCAC-AAAAAAAAC----------------------------------------AGTCCTTCCATAAATGCCATCAAAt---attattgccattttaaa
s panTro5.chr6             30274183 116 + 175400573 ACCCCGGTCTT-----------------------TCCAAGTGGGGAAACTAACATTTATGAAACAACTAATACATACCTACACTTCAC-AAAAACAAC----------------------------------------AGTCCTTCCATAAATGCCATCAAAt---attattgccattttaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30504731 116 + 173848474 ACCCCGGTCTT-----------------------TCCAAGTGGGGAAACTAACATTTATGAAACAACTAATACATACCTACACTTCAC-AAAAacaac----------------------------------------agtccttccataaatgccatcaaat---attattgccattttaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     211277 116 +   2037526 ACCCCGGTCTT-----------------------TCCAAGTGGGGAAACTAACATTTATGAAACAACTAATACATACCTACACTTCAC-AAAAACAAC----------------------------------------AGTCCTTCCATAAATGCAATCAAAt---attattgccattttgaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74884241 119 + 122973662 ACCCCGGTCTT-----------------------CCCAAGTGGGGAAACTAACATTTATGAAACAACTAATACATACCTACACTTCAC-AAAAACAAT----------------------------------------AGTCCTTCCATAAATGCAATCaaatatcattattgccattttaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30757986 120 + 172585720 ACCCCCGTCTT-----------------------CCCAAGTGGGGAAACTAACATTTATGAAACAACAAATACATATCTACACTTCAC-AAACACAAT---------------------------------------aagtccttccacaaatgcaatcaaatattattattgccattttaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30053129 120 - 170955103 ACCCCCGTCTT-----------------------CCCAAGTGGGGAAACTAACATTTATGAAACAACTAATACATATCTACACTTCAC-AAACACAAT---------------------------------------aagtccttccacaaatgcaatcaaatattattattgccattttaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     302415 120 +   1495729 ACCCCCGTCTT-----------------------CCCAAGTGGGGAAACTAACATTTATGAAACAACTAATACATATCTACACTTCAC-AAACACAAT---------------------------------------aagtccttccacaaatgcaatcaaatattattattgccattttaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     398605 120 -    863181 ACCCCCGTCTT-----------------------CCCAAGTGGGGAAACTAACATTTATGAAACAACTAATACATATCTACACTTCAC-AAACACAAT---------------------------------------aagtccttccacaaatgcaatcaaatattattattgccattttaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29552503 120 -  71996105 ACCCCCGTCTT-----------------------CCCAAGTGGGGAAAATAACATTTATGAAACAACTAatacatatctacactttac-aaacacaat---------------------------------------aagtccttccacaaatgcaatcaaatattattattgccattttaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     235207 120 -    735854 ACCCCCATCTT-----------------------CCCAAGTGGGGAAACTAACATTTATGAAACAACTAATACATATCTACACTTCAC-AAACACAAT---------------------------------------aagtccttccacaaatgcaatcaaatattattattgccattttaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     190551 117 -   1829203 A--CCCGTCTT-----------------------CCCAAGTGGGGAAACTAACATTTATGAAACAGCTAATACATACCTACACTTCAC-AAACACAAT----------------------------------------AGTCCTTCCacaaatgcaatcaaatattattattgccattttaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30360592 118 + 171630274 ACACCAGTCTT-----------------------CCCAAGTGGGGAAACTAATAGTTATGAAACAACTAATATATACTTACATTTCAC-AAAAACAAT----------------------------------------CGTCTTTCCA-AAATGCTAgcaaatattactattgccactttaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           184358 118 +    515838 ATCCTAGTCTT-----------------------CCCAAGCGGGAAAACTAACATTTATGAAACAACTAATATATACCTACACTTCAC-AAAAACAAT----------------------------------------AGTCCTTCCA-AAATGCTAGCAAATATTACTATTGCCACTTTAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     816935 118 -   1771730 ACCCCAGTCTT-----------------------CCCAACTGGGGATACTAACAGTTATGAAACAACTAATATATACCTACACTTCAC-AAAAACAAt----------------------------------------agtccttcca-aaatgctagcaaatattactattgccactttaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     302391 118 -    383796 ACCCCAGTCTT-----------------------CCCAAGTGGGGAAACTAACAGTTATGAAACAACAAATATATACCCACACTTCAC-AAAAACAAt----------------------------------------agtccttcca-aaatgctagcaaatattactattgccactttaaa
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               281161 120 + 123392446 ATCCAGGTCTT-----------------------CTCAAGTGGAGAaactaatatttatgaaacaactaatacacaataatgcttcacaaaaaatcat----------------------------------------aatccttccatgaatactatgaatttttattatttccactttaca
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      86823 119 -   1411461 ACCCAGGTCTT-----------------------CTCAAGTGGGGAAACTAATATTTATGAAACAACTAATACATAATAATGCTTCAC-AAAAATCAt----------------------------------------aatccttccatgaatgctatgaatttttattattctcactttaca
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           228885 157 +  18854210 ACCCAGGTCTT-----------------------CTCAAGTGGGAAAACTGACATTTATGAAACAACTAACACATAGTAATGCGTCAC-AAAAATAATCCTTTTGTACCTTCAATGAATCCCCAACAATAAAAAAAAAaatccttcca--aatgctgtgaattattattattctcactttaca
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58020730 111 -  94987271 AACTAGGTCTT-----------------------CTCAGCTGGGAGAGCTAACATCTACGAAACAAC-AGTA-ATAATAATGTCCTAC-AATGTTCTT----------------------------------------CAT-TTTCCATAAATCCCTTAAA-----GCTGTTCTCACTTCATA
i mm10.chr17               C 0 C 0
s dasNov3.JH569887             7720 137 -     22419 ACCCAGACCCTCCATGTCAGCGCTGTGGAACACCCCAAAGTGGGGAGACTaacacttactaaacacctggcatatgctaacacgtcac-aaaacttat----------------------------------------aaccctcccattaatgcta--aaat---atggcttccaattcact
i dasNov3.JH569887         C 0 C 0
e canFam3.chr35            26281639   0 +  26524999 C

a score=149374.000000
s hg38.chr6_GL000254v2_alt  1400852 10 +   4827813 gatgaggaca
s panTro5.chr6             30274299 10 + 175400573 gatgaggaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30504847 10 + 173848474 gatgaggaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     211393 10 +   2037526 gatgaggaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74884360 10 + 122973662 gatgaggaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30758106 10 + 172585720 gatgaggata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30053249 10 - 170955103 gatgaggata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     302535 10 +   1495729 gatgaggata
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     398725 10 -    863181 gatgaggaca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29552623 10 -  71996105 gatgaggata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     235327  7 -    735854 gat---gaca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     190668 10 -   1829203 gatgaggaca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30360710 10 + 171630274 gatgaggaca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           184476 10 +    515838 GACGAGGACA
i saiBol1.JH378341         C 0 I 418
s cebCap1.NW_016107755v1     817053 10 -   1771730 gatgaggaca
i cebCap1.NW_016107755v1   C 0 I 326
s aotNan1.NW_018496904v1     302509 10 -    383796 gatgaggaca
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               281281 10 + 123392446 gatgaggaaa
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      86942 10 -   1411461 gatgaggaaa
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           229042 10 +  18854210 gatgacggaa
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58020841 10 -  94987271 AATAAGAAAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26281639 10 +  26524999 GGTGGGGACC
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             7857 10 -     22419 gatgaggaaa
i dasNov3.JH569887         C 0 C 0

a score=35290.000000
s hg38.chr6_GL000254v2_alt  1400862 3 +   4827813 ctg-
s panTro5.chr6             30274309 3 + 175400573 ctg-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30504857 3 + 173848474 ctg-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     211403 3 +   2037526 ctg-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74884370 3 + 122973662 ctg-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30758116 3 + 172585720 ctg-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30053259 3 - 170955103 ctg-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     302545 3 +   1495729 ctg-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     398735 3 -    863181 ctg-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29552633 3 -  71996105 ctg-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     235334 3 -    735854 ctg-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     190678 3 -   1829203 ctg-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30360720 3 + 171630274 ctg-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           184904 3 +    515838 CTG-
i saiBol1.JH378341         I 418 C 0
s cebCap1.NW_016107755v1     817389 3 -   1771730 CTG-
i cebCap1.NW_016107755v1   I 326 C 0
s aotNan1.NW_018496904v1     302519 3 -    383796 ctg-
i aotNan1.NW_018496904v1   C 0 I 305
s micMur3.chr6               281291 3 + 123392446 atg-
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      86952 3 -   1411461 ctg-
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           229052 3 +  18854210 cta-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58020851 1 -  94987271 C---
i mm10.chr17               C 0 C 0
s canFam3.chr35            26281649 3 +  26524999 CTG-
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             7867 3 -     22419 -tgg
i dasNov3.JH569887         C 0 C 0

a score=18459.000000
s hg38.chr6_GL000254v2_alt  1400865 1 +   4827813 a
s panTro5.chr6             30274312 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30504860 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     211406 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74884373 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30758119 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30053262 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     302548 1 +   1495729 a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     398738 1 -    863181 a
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29552636 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     235337 1 -    735854 a
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     190681 1 -   1829203 a
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30360723 1 + 171630274 a
i calJac3.chr4             C 0 I 880
s saiBol1.JH378341           184907 1 +    515838 A
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     817392 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     302827 1 -    383796 a
i aotNan1.NW_018496904v1   I 305 C 0
s micMur3.chr6               281294 1 + 123392446 a
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      86955 1 -   1411461 a
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           229055 1 +  18854210 a
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58020852 1 -  94987271 A
i mm10.chr17               C 0 C 0
s canFam3.chr35            26281652 1 +  26524999 G
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             7870 1 -     22419 a
i dasNov3.JH569887         C 0 C 0

a score=264862.000000
s hg38.chr6_GL000254v2_alt  1400866 19 +   4827813 acactagaaaggatatgca
s panTro5.chr6             30274313 19 + 175400573 acactagaaaggatatgca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30504861 19 + 173848474 acactagaaaggatatgca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     211407 19 +   2037526 acactagaaaggatatgca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74884374 19 + 122973662 acactagaaaggatatgca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30758120 19 + 172585720 acactagaaaggatatgca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30053263 19 - 170955103 acactagaaaggatatgca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     302549 19 +   1495729 acactagaaaggatatgca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     398739 19 -    863181 acactagaaaggatatgca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29552637 19 -  71996105 acactagaaaggatatgca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     235338 19 -    735854 acactagaaaggatatgca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     190682 19 -   1829203 acactagaaaggatatgca
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           184908 19 +    515838 ACATTAGAAAGGATATGCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     817393 19 -   1771730 ACATTAGAAAGGATATGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     302828 19 -    383796 acattagaaaggatatgca
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               281295 19 + 123392446 acatcagagaggataagca
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      86956 19 -   1411461 acatcagagaggataagca
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           229056 19 +  18854210 acaccagaaaggataagca
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58020853 19 -  94987271 ATGTTTAACAGGATAAAca
i mm10.chr17               C 0 I 742
s canFam3.chr35            26281653 16 +  26524999 ACGTCA---AGACTCCGCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             7871 19 -     22419 aggtcaaagaggatacggc
i dasNov3.JH569887         C 0 C 0
e calJac3.chr4             30360724 880 + 171630274 I

a score=353207.000000
s hg38.chr6_GL000254v2_alt  1400885 28 +   4827813 actt-gAACAAATGCAAGTCAACTAAAAA-
s panTro5.chr6             30274332 28 + 175400573 actt-gaacaaatgcaagtcaactaaaaa-
i panTro5.chr6             C 0 I 1
s panPan2.chr6             30504880 28 + 173848474 actt-gaacaaatgcaagtcaactaaaaa-
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01015528v1     211426 28 +   2037526 actt-gaacaaatgcaagtcaactaaaaa-
i gorGor5.CYUI01015528v1   C 0 I 1
s nomLeu3.chr1a            74884393 28 + 122973662 actt-gaacaaatgcaagtcaactaaaaa-
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             30758139 28 + 172585720 actt-gaacaaatgcaagtcaactaaaaa-
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             30053282 28 - 170955103 actt-gaacaaatgcaagtcaactaaaaa-
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     302568 28 +   1495729 actt-gaacaaatgcaagtcaactaaaaa-
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     398758 28 -    863181 actt-gaacaaatgcaagccaactaaaaa-
i cerAty1.NW_012002535v1   C 0 I 1858
s chlSab2.chr17            29552656 28 -  71996105 actt-gaacaaatgcaagtcaactaaaaa-
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1     235357 28 -    735854 actt-gaacaaatgcaagtcaactaaaaa-
i manLeu1.NW_012107142v1   C 0 I 1
s colAng1.NW_012115577v1     190701 28 -   1829203 actt-gaacaaatgcaagtcaactaaaaa-
i colAng1.NW_012115577v1   C 0 I 1
s saiBol1.JH378341           184927 29 +    515838 ACTTGGAACAAATGCAAATCAACTAAAAA-
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     817412 28 -   1771730 ACTT-GAACAAATGCAAATCAACTAAAAA-
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496904v1     302847 28 -    383796 acat-gaacaaatgcaaaccaactaaaaa-
i aotNan1.NW_018496904v1   C 0 I 1
s micMur3.chr6               281314 28 + 123392446 cctt-aaacaaacacaaggcaactaaaaa-
i micMur3.chr6             C 0 I 1
s proCoq1.NW_012149775v1      86975 28 -   1411461 actt-gaacaaatgcaaggcaactaaaaa-
i proCoq1.NW_012149775v1   C 0 I 1
s otoGar3.GL873550           229075 28 +  18854210 actt-gaataaatgcaaggcaactaaaaa-
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26281669 25 +  26524999 ---C-CAGCAAACACTAGGTAAGTAAAAC-
i canFam3.chr35            C 0 I 1
s dasNov3.JH569887             7890 10 -     22419 --------------------agctgaaaat
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58020872 742 -  94987271 I
e calJac3.chr4             30360724 880 + 171630274 I

a score=278182.000000
s hg38.chr6_GL000254v2_alt  1400913 21 +   4827813 AGTTAAGCTAATTTTCAAGTG
s panTro5.chr6             30274361 21 + 175400573 agttaagctaattttcaagtc
i panTro5.chr6             I 1 C 0
s panPan2.chr6             30504909 21 + 173848474 agttaagctaattttcaagtc
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01015528v1     211455 21 +   2037526 agttaagctaattttcaagtc
i gorGor5.CYUI01015528v1   I 1 C 0
s nomLeu3.chr1a            74884422 21 + 122973662 agttaagccaattttcaagtc
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30758168 21 + 172585720 agttaagctaattttcaagtc
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30053311 21 - 170955103 agttaagctaattttcaagtc
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     302597 21 +   1495729 agttaagctaattttcaagtc
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     400644 21 -    863181 agttaagctaattttcaagtc
i cerAty1.NW_012002535v1   I 1858 C 0
s chlSab2.chr17            29552685 21 -  71996105 agttaagctaattttcaagtc
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1     235386 21 -    735854 agttaagttaattttcaagtc
i manLeu1.NW_012107142v1   I 1 C 0
s colAng1.NW_012115577v1     190730 21 -   1829203 agttaagctaattttcaagtc
i colAng1.NW_012115577v1   I 1 C 0
s saiBol1.JH378341           184957 21 +    515838 AGTTAAGCTAATTTTCAAATC
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     817441 21 -   1771730 AGTTAAGCTAATTTGCAAGTC
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496904v1     302876 21 -    383796 agttaagctaattttcaagtc
i aotNan1.NW_018496904v1   I 1 C 0
s micMur3.chr6               281343 21 + 123392446 ataaaagatagttttcaagtc
i micMur3.chr6             I 1 C 0
s proCoq1.NW_012149775v1      87004 21 -   1411461 agaaaagttacttttcaagtc
i proCoq1.NW_012149775v1   I 1 C 0
s otoGar3.GL873550           229104 21 +  18854210 agctaagccagttttcaagtc
i otoGar3.GL873550         I 1 C 0
s canFam3.chr35            26281695 21 +  26524999 CACTCTGCCCAGCTTCACATC
i canFam3.chr35            I 1 C 0
s dasNov3.JH569887             7900 21 -     22419 agctaagctagttttcaagct
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58020872 742 -  94987271 I
e calJac3.chr4             30360724 880 + 171630274 I

a score=663346.000000
s hg38.chr6_GL000254v2_alt  1400934 48 +   4827813 CAGAACT-ATCT-----ATCTGTATCTGATACAAATGGGAATATTCACTGAACC
s panTro5.chr6             30274382 48 + 175400573 cagaact-atct-----ATCTGTATCTGATACAAATGGGAATATTCACTGAACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30504930 48 + 173848474 cagAACT-ATCT-----ATCTGTATCTGATACAAATGGGAATATTCACTGAACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     211476 48 +   2037526 cagaact-atct-----atctGTATCTGATACAAACGGGAATATTCACTGAACC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74884443 48 + 122973662 cagaact-atct-----atctGTATCTGATACAAATGGGAATATTCACTGAACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30758189 48 + 172585720 cagAACT-ATCT-----ATCTGTGTCTGATACAAATGGGAATATTCACTGAACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30053332 48 - 170955103 cagaact-atct-----atctGTGTCTGATACAAATGGGAATATTCACTGAACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     302618 48 +   1495729 cagAACT-ATCT-----ATCTGTGTCTGATACAAATGGGAATATTCACTGAACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     400665 48 -    863181 cagAACT-ATCT-----ATCTGCGTCTGATACAAATGGGAATATTCACTGAACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29552706 48 -  71996105 cagaact-atct-----atctGTGTCTGATACAAATGGGAATATTCACTGAACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     235407 48 -    735854 cagaact-atct-----atctGCGTCTGATACAAATGGGAATATTCACTGAACC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     190751 48 -   1829203 cagAACT-ATCT-----ATCTGTATCTGATACAAATGGGAATATTCACTGAACC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30361604 47 + 171630274 CAGAACT-ATCT------TATATATCTGATACACACGGAAATATTCACTGAACC
i calJac3.chr4             I 880 C 0
s saiBol1.JH378341           184978 47 +    515838 CAGAACT-ATCT------TATATATCTGATACAAACGGGAATATCCACTGAACC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     817462 47 -   1771730 CAGAACT-ATCT------TATATATCTGATACAAACGGGAATATCCACTGAACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     302897 47 -    383796 cagAACT-ATGT------TATATATCTGATACAAATGGGAATATTCACTGAACC
i aotNan1.NW_018496904v1   C 0 I 943
s micMur3.chr6               281364 53 + 123392446 caaaact-atcATATACATCTGTATTTGATACAAATGGGAATATTCACTGAACC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      87025 53 -   1411461 caaaact-atctTATACAACTGTATTTGATACAAATGGGAATATTCACTGAACC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           229125 47 +  18854210 cagagct-ATATTA------TGTACTTGATACAAATGGGAATATTCACTGAACC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26281716 42 +  26524999 CAGAACTGGTGC-----TCCAGAATCAGATACAAAC------ATCCA-TGAACT
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             7921 44 -     22419 cagaact-ttct------aaTACGTCCCA---GAATGGGAATATTCACTGAACT
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58020872 742 -  94987271 I

a score=61387.000000
s hg38.chr6_GL000254v2_alt  1400982 4 +   4827813 CTGG
s panTro5.chr6             30274430 4 + 175400573 CTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30504978 4 + 173848474 CTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     211524 4 +   2037526 CTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74884491 4 + 122973662 CTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30758237 4 + 172585720 CTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30053380 4 - 170955103 CTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     302666 4 +   1495729 CTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     400713 4 -    863181 CTGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29552754 4 -  71996105 CTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     235455 4 -    735854 CTGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     190799 4 -   1829203 CTGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30361651 4 + 171630274 CCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           185025 4 +    515838 CCAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     817509 4 -   1771730 CCAG
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               281417 4 + 123392446 CTGG
i micMur3.chr6             C 0 I 383
s proCoq1.NW_012149775v1      87078 4 -   1411461 CTGG
i proCoq1.NW_012149775v1   C 0 I 7
s otoGar3.GL873550           229172 4 +  18854210 CTGG
i otoGar3.GL873550         C 0 I 7
s canFam3.chr35            26281758 4 +  26524999 CTGG
i canFam3.chr35            C 0 I 1
s dasNov3.JH569887             7965 4 -     22419 CTGG
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58020872 742 -  94987271 I
e aotNan1.NW_018496904v1     302944 943 -    383796 I

a score=37688.000000
s hg38.chr6_GL000254v2_alt  1400986 10 +   4827813 --A-GAG-------AATGAG------
s panTro5.chr6             30274434 10 + 175400573 --A-GAG-------AACGAG------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30504982 10 + 173848474 --A-GAG-------AACGAG------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     211528 10 +   2037526 --A-GAG-------AACGAG------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74884495 10 + 122973662 --A-GAG-------AACGAG------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30758241  9 + 172585720 --A-GAG--------ATGAG------
i rheMac8.chr4             C 0 I 6
s macFas5.chr4             30053384  9 - 170955103 --A-GAG--------ATGAG------
i macFas5.chr4             C 0 I 6
s macNem1.NW_012012100v1     302670  9 +   1495729 --A-GAG--------ATGAG------
i macNem1.NW_012012100v1   C 0 I 6
s cerAty1.NW_012002535v1     400717  9 -    863181 --A-GAG--------ATGAG------
i cerAty1.NW_012002535v1   C 0 I 6
s chlSab2.chr17            29552758  9 -  71996105 --A-GAG--------ATGAG------
i chlSab2.chr17            C 0 I 25
s manLeu1.NW_012107142v1     235459  9 -    735854 --A-GAG--------ATGAG------
i manLeu1.NW_012107142v1   C 0 I 6
s colAng1.NW_012115577v1     190803  9 -   1829203 --A-GAG--------ATGAG------
i colAng1.NW_012115577v1   C 0 I 6
s calJac3.chr4             30361655 17 + 171630274 --G-GAGAAATGAGAATGAG------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           185029 17 +    515838 --G-GAGAAATGAGAATGAG------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     817513 17 -   1771730 --G-GAGAAATAAGAATGAG------
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1      87089 10 -   1411461 --A-GGG-------AACTAG------
i proCoq1.NW_012149775v1   I 7 C 0
s otoGar3.GL873550           229183 11 +  18854210 --ATGAG-------AACTGG------
i otoGar3.GL873550         I 7 C 0
s canFam3.chr35            26281763 15 +  26524999 --A-GAG--ACAAGAAGGAG------
i canFam3.chr35            I 1 C 0
s dasNov3.JH569887             7969 17 -     22419 CGA-AAG--------ATGAAAAACAG
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               281421 383 + 123392446 I
e mm10.chr17               58020872 742 -  94987271 I
e aotNan1.NW_018496904v1     302944 943 -    383796 I

a score=56820.000000
s hg38.chr6_GL000254v2_alt  1400996 17 +   4827813 CATTT------------------------------GAAAAAAAAA-AG
s panTro5.chr6             30274444 17 + 175400573 CATTT------------------------------AAAAAAAAAA-AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30504992 15 + 173848474 CATTT--------------------------------AAAAAAAA-AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     211538 18 +   2037526 CATTT-----------------------------AAAAAAAAAAA-AG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74884505 18 + 122973662 CATTT-----------------------------AAAAAAAAAAA-AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30758256 17 + 172585720 CATTT------------------------------AAAAAAAAGG-GG
i rheMac8.chr4             I 6 I 2
s macFas5.chr4             30053399 17 - 170955103 CATTT------------------------------AAAAAAAAGG-GG
i macFas5.chr4             I 6 I 2
s macNem1.NW_012012100v1     302685 17 +   1495729 CATTT------------------------------AAAAATAAGG-GG
i macNem1.NW_012012100v1   I 6 I 2
s cerAty1.NW_012002535v1     400732 18 -    863181 CATTT------------------------------AAAAAAAAAACGG
i cerAty1.NW_012002535v1   I 6 I 2
s manLeu1.NW_012107142v1     235474 17 -    735854 CATTT------------------------------AAAAAAAAAA-AG
i manLeu1.NW_012107142v1   I 6 I 4
s colAng1.NW_012115577v1     190818 17 -   1829203 CATTT------------------------------AAAAAAAGGA-GG
i colAng1.NW_012115577v1   I 6 I 2
s calJac3.chr4             30361672 17 + 171630274 CATTT------------------------------TAAAAAGAAA-AA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           185046 20 +    515838 CATTT---------------------------AAAAAAAAAAAAA-AA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     817530 47 -   1771730 CATTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa-aa
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1      87099 15 -   1411461 CATTT------------------------------TTAAAAGAAG---
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           229194 16 +  18854210 CATTA------------------------------AAAAAAAAAG-G-
i otoGar3.GL873550         C 0 I 260
s canFam3.chr35            26281778 14 +  26524999 TACTG------------------------------CAAACAAAA----
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             7986 14 -     22419 CATTG------------------------------AGAAAACAA----
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               281421 383 + 123392446 I
e mm10.chr17               58020872 742 -  94987271 I
e aotNan1.NW_018496904v1     302944 943 -    383796 I
e chlSab2.chr17            29552767 25 -  71996105 I

a score=12000.000000
s hg38.chr6_GL000254v2_alt  1401013 1 +   4827813 G
s panTro5.chr6             30274461 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30505007 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     211556 1 +   2037526 G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74884523 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30758275 1 + 172585720 G
i rheMac8.chr4             I 2 C 0
s macFas5.chr4             30053418 1 - 170955103 G
i macFas5.chr4             I 2 C 0
s macNem1.NW_012012100v1     302704 1 +   1495729 G
i macNem1.NW_012012100v1   I 2 C 0
s cerAty1.NW_012002535v1     400752 1 -    863181 G
i cerAty1.NW_012002535v1   I 2 C 0
s chlSab2.chr17            29552792 1 -  71996105 G
i chlSab2.chr17            I 25 C 0
s manLeu1.NW_012107142v1     235495 1 -    735854 G
i manLeu1.NW_012107142v1   I 4 C 0
s colAng1.NW_012115577v1     190837 1 -   1829203 G
i colAng1.NW_012115577v1   I 2 C 0
s calJac3.chr4             30361689 1 + 171630274 G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           185066 1 +    515838 G
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     817577 1 -   1771730 G
i cebCap1.NW_016107755v1   C 0 C 0
s dasNov3.JH569887             8000 1 -     22419 G
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               281421 383 + 123392446 I
e mm10.chr17               58020872 742 -  94987271 I
e proCoq1.NW_012149775v1      87114 0 -   1411461 C
e canFam3.chr35            26281792 0 +  26524999 C
e otoGar3.GL873550           229210 260 +  18854210 I
e aotNan1.NW_018496904v1     302944 943 -    383796 I

a score=20608.000000
s hg38.chr6_GL000254v2_alt  1401014 2 +   4827813 GT
s panTro5.chr6             30274462 2 + 175400573 GT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30505008 2 + 173848474 GT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     211557 2 +   2037526 GT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74884524 2 + 122973662 GT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30758276 2 + 172585720 AT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30053419 2 - 170955103 AT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     302705 2 +   1495729 AT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     400753 2 -    863181 GT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29552793 2 -  71996105 AT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     235496 2 -    735854 GT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     190838 2 -   1829203 GT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30361690 2 + 171630274 GT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           185067 2 +    515838 GT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     817578 2 -   1771730 GT
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1      87114 2 -   1411461 GT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           229470 2 +  18854210 GC
i otoGar3.GL873550         I 260 C 0
s canFam3.chr35            26281792 2 +  26524999 GT
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             8001 2 -     22419 GC
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               281421 383 + 123392446 I
e mm10.chr17               58020872 742 -  94987271 I
e aotNan1.NW_018496904v1     302944 943 -    383796 I

a score=134276.000000
s hg38.chr6_GL000254v2_alt  1401016 9 +   4827813 TCACTTAAG
s panTro5.chr6             30274464 9 + 175400573 TCACTTAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30505010 9 + 173848474 TCACTTAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     211559 9 +   2037526 TCACTTAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74884526 9 + 122973662 TCACTTAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30758278 9 + 172585720 TCACTTAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30053421 9 - 170955103 TCACTTAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     302707 9 +   1495729 TCACTTAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     400755 9 -    863181 TCACTTAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29552795 9 -  71996105 TCACTTAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     235498 9 -    735854 TCACTTAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     190840 9 -   1829203 TCACTTAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30361692 9 + 171630274 TCACATAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           185069 9 +    515838 TCACATAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     817580 9 -   1771730 TCACATAAG
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1      87116 9 -   1411461 TCACTTAAG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           229472 9 +  18854210 TCACTTAAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58021614 9 -  94987271 TCGCAGAAG
i mm10.chr17               I 742 C 0
s canFam3.chr35            26281794 9 +  26524999 TCACTTAAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             8003 9 -     22419 TCATTTATG
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               281421 383 + 123392446 I
e aotNan1.NW_018496904v1     302944 943 -    383796 I

a score=4112131.000000
s hg38.chr6_GL000254v2_alt  1401025 263 +   4827813 AGATATGATTTTATCATAACAGCATTGAAACTT---TA---ATCTCTTATTTTTCCTATTTGACTTCTTAAAAAGGGTGGCATTGCCAAGAATTTTCTTTGATATGGTTTCACAATTGTATTCACCTTCTCTCCATTCTGAGACTTATCCATAAGAATACTCACTTTAATCCGACTTCTACTGCATGGTTGGAAAAGAAGATACGCAATAACTCTTTCAAACTCCTTTATCTCT---TTTACTCTCTCATGCTTCTCATATGTAAGTAGCTG
s panTro5.chr6             30274473 263 + 175400573 AGATATGATTTTATCATAACAGCATTGAAACTT---TA---ATCTCTTATTTTTCCTATTTGACTTCTTAAAAAGGGTGGCATTGCCAAGAATTTTCTTTGATATGGTTTCACAATTGTATTCACCTTCTCTCCATTCTGAGACTTATCCATAAGAATACTCACTTTAATCCGACTTCTACTGCATGGTTGGAAAAGAGGATATGCAATAACTCTTTCAAACTCCTTTATCTCT---TTTACTCTCTCATGCTTCTCATATGTAAGTAGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30505019 263 + 173848474 AGATATGATTTTATCATAACAGCATTGAAACTT---TA---ATCTCTTATTTTTCCTATTTGACTTCTTAAAAAGGGTGGCATTGCCAAGAATTTTCTTTGATATGGTTTCACAATTGTATTCACCTTCTCTCCATTCTGAGACTTATCCATAAGAATACTCACTTTAATCCGACTTCTACTGCATGGTTGGAAAAGAGGATATGCAATAACTCTTTCAAACTCCTTTATCTCT---TTTACTCTCTCATGCTTCTCATATGTAAGTAGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     211568 263 +   2037526 AGATATGATTTTATCATAACAGCATTGAAACTT---TA---ATCTCTTATTTTTCCTATTTGACTTCTTAAAAAGGGTGGCATTGCCAAGAATTTTCTTTGATATGGTTTCACAATTGTATTCACCTTCTCTTCATTCTGAGACTTATCCATAAGAATACTCACTTTAATCCAACTTCTACTGCATGGTTGGAAAAGAGGATACGCAATAACTCTTTCAAACTCCTTTATCTCT---TTTACTCTCTCATGCTTCTCATATGTAAGTAGCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74884535 266 + 122973662 AGATATGATTTTATCATAACAGCATTGAAACTT---TA---ATCTCTTATTTTTCCTATTTGACTTCTTAAAAAGGGCGGCATGGCCAAGAATTTTCTTTGATATGGTTTCACAATTGTATTCACTTTCTCTCCATTCTGAGACTTTTCCATAAGAATATTCACTTTAATCCAACTTCTACTGCATGGTTGGAAAAGAGGATACGCAATAACTCTTTCAAACTCCTTTATCTCTTTCTTTACTCTCTCATGCTTCTCATATGTAAGTAGCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30758287 266 + 172585720 AGATATGATTTTATCATAACAGCATTGAAACTT---TA---ATCTTTTATTTTTCCTATTTGACTTCTTAAAAAGGGTGGCATGGCCAAGAATTTTCTTTGATATGGTTTCACAATTGTATTCACTTTCTCTCCATTCTGAGACTTTTCCATTAGAATATTCACTTTAATCCTACTTCTACTGCATGGCTGGAAAAGAGGATATGCAATAACTCTTTCAAACTCCTTTACCTCTTTCTTTACTCTCTCACGCTTCTCATATGTAGGTAGCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30053430 266 - 170955103 AGATATGATTTTATCATAACAGCATTGAAACTT---TA---ATCTTTTATTTTTCCTATTTGACTTCTTAAAAAGGGTGGCATGGCCAAGAATTTTCTTTGATATGGTTTCACAATTGTATTCACTTTCTCTCCATTCTGAGACTTTTCCATTAGAATATTCACTTTAATCCTACTTCTACTGCATGGCTGGAAAAGAGGATATGCAATAACTCTTTCAAACTCCTTTACCTCTTTCTTTACTCTCTCACGCTTCTCATATGTAGGTAGCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     302716 266 +   1495729 AGATATGATTTTATCATAACAGCATTGAAACTT---TA---ATCTTTTATTTTTCCTATTTGACTTCTTAAAAAGGGTGGCATGGCCAAGAATTTTCTTTGATATGGTTTCACAATTGTATTCACTTTCTCTCCATTCTGAGACTTTTCCATTAGAATATTCACTTTAATCCGACTTCTACTGCATGGCTGGAAAAGAGGATATGCAATAACTCTTTCAAACTCCTTTATCTCTTTCTTTACTCTCTCACGCTTCTCATATGTAGGTAGCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     400764 266 -    863181 AGATATGATTTTATCATAACAGCACTGAAACTT---TA---ATCTTTTATTTTTCCTATTTGACTTCTTAAAAAGGGTGGCATGGCCAAGAATTTTCTTTGATATGGTTTCACAATTGTATTCACTTTCTCTCCATTCTGAGACTTTTCCATTAGAATATTCACTTTAATCCGACTTCTACTGCATGGCTGGAAAAGCGGATATGCAGTAACTCTTTCAAACTCCTTTATCTCTTTCTTTACTCTCTCACGCTTCTCATATGTAGGTAGCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29552804 266 -  71996105 AGATATGATTTTATCATAACAGCATTGAAACTT---TA---ATCTTTTATTTTTCCTATTTGACTTCTTAAAAAGGGTGGCATGACCAAGAATTTTCTTTGATATGGTTTCACAATTGTATTCACTTTCTCTCCATTCTGAGACTTTTCCATTAGAATATTCACTTTAATCCGACTTCTACTGCATGGCTGGAAAAGAGGATATGCAATAACTCTTTCAAACTCCTTTATCTCTTTCTTTACTCTCTCACGCTTCTCATATGTAGGTAGCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     235507 266 -    735854 AGATATGATTTTATCATAACAGCACTGAAACTT---TA---ATCTTTTATTTTTCCTATTTGACTTCTTAAAAAGGGTGGCATGGCCAAGAATTTTCTTTGATATGGTTTCACAATTGTATTCACTTTCTCTCCATTCTGAGACTTTTCCATTAGAATATTCACTTTAATCCGACTTCTACTGCATGGCTGGAAAAGAGGATATGCAATAACTCTTTCAAACTCCTTTATCTCTTTCTTTACTCTCTCACGCTTCTCATATGTAGGTAGCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     190849 266 -   1829203 AGATATGATTTTATCATAACAGCATTGAAACTT---CA---ATCTTTTATTTTTCCTATTTGACTTCTTAAAAAGGGTGGCATGGCCAAGAATTTTCTTTGATATGGTTTCACAATTGTATTCACTTTCTCTCCATTCTGAGACTTTTCCATAAGAATATTCACTTTAATCCGACTTCTACTGCATGGCTGGAAAAGAGGATATGCAATAACTCTTTCAAACTCCTTTATCTCTTTCTTTACTCTCTCACGCTTCTCATATGTAGGAAGCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30361701 266 + 171630274 AGATATAATTTTATCATAACAGCATTGAAAGTT---TA---ATCTCTTATTTTTCCCATTTGACTTCTTAAAAAGGGTGGCATGGTCAAGAATTCTCTTTGATATGGTTTCATAATTGTATTCACTTTCTCTCCATCCTGAGACTTTTCCATAAGAATATTCACCTTAATCCGACTTCTACTGCATGGCTGGAAAAGAGGATATGCAATAACTCTTTCCAACTCCTTTATCTCTTTCTTTACTCTCTCATGCTTCTCACATGTAGGTAGTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           185078 264 +    515838 AG--ATCATTTTATCATAACAGCATTGAAACTT---TA---ATCTCTTATTTTTCCCATTTGACTTCTTAAAAAGGGTGGCATGGTCAAGAATTCTCTTTGATATGGTTTCATAATTGTATTCACTTTCTCTCCATCCTGAGACTTTTCCATAAGAATATTCACCTTGATCCGACTTCTACTGCATGGCTGGAAAAGAGGATACGCAATAACTCTTTCCAACTCCTTTATCTCTTTCTTTACTCTCTCATGCTTCTCATATGTAGGTGGTTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     817589 266 -   1771730 AGAGATAATTTTATCATAACAGCATTGAAACTT---TA---ATCTCTTATTTTTCCCATTTGACTTCTTAAAAAGGGTGGCATGGTCAAGAATTCTCTTTGATATGGTTTCAAAATTGTATTCACTTTCTCTCCATCCTGAGACTTTTCCATAAGAATATTCACCTTAATCCGACTTCTACTGCATGGCTGAAAAAGAGGATACGCAATAACTCTTTCCAACTCCTTTACCTCTTTCTTTACTCTCTCATGCTTCTCATATGTAGGTAGTTG
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               281804 269 + 123392446 AGATATGATTTTATCATAAAAGCACTGAAACTTTGCTA---ATCTTTTATTTTTCCTATTTGACTTCTCAAAAAGGGTGGCACAGCCAAGAATCTTCTCTGGTAAGGTTTTATAATTGCATTTGCTTCTTCTCCATTCTGAGACTTTTCCATAAGAATATTCACTTTAATCTGACTTCTACTGAGTGGTTGGAAAAGTGGATATGCAATAATTCTTTCAAACTCTTTTATCTCTTTTTTTACTCTTTCATGCTTCTCATGTGTAGGTAGCTG
i micMur3.chr6             I 383 C 0
s proCoq1.NW_012149775v1      87125 269 -   1411461 CGATATGATTTTATCAGAAAAGCACTGAAACTTTGCTA---ATCTTTTATTTTTCCTATCTGACTTCTCAAAAAGGGTGGCACAGCCAAGAATCTTCTCTGGTATGGTTTTATAATTGCATCTGTTTCCTCTCCATTCTGAGACTTTTCCATAAGAATATTCACTTTAATCCGACTTGTACTGAGTGGCTGGAAAAGTGGATATGCAGTAACTCTTTCAAACTCTTTTATCCCTTTCTTTACTCTTTCACGCTTCTCACGTGTAGGCAGCTG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           229481 266 +  18854210 AGACATGATTTTATCATAAAAGCACCAACACTTTACTA---A---TTTATTTTTCCTATTTGACTTTTCAAAAAGGGCGGCACAGCCAAGAATCTTCTTTGGCATGGTTTTATAATTATATGTGCTTCCTCTCCATTCTGAGATTTTTCCATTAGTATATTCACTTTAATCCGACTTCTACTGAGTGGTTGGAAAAGTGGATATGCAATAACTCTTTCAAATTCTTTAATCTCTTTCTTTACTTTTTCACACTTCTCATGTTTAGGTAGCTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58021623 269 -  94987271 AAACATGGTACCATTAGCAAAGCTCTGAAACTT---TACAGATCCTTTATTTTTCCTATTTGAGTTCTCAAAAAGGGTGGTACAGCTAAGAATCTCCTTCCAAAAGGTTTTATAATTGTGCTCAAGTCCTCTTCATCCTGAGATTTTTCCATAAGAACATCTACTTTAATCCTACTGGTACAGGATGGCTGGACTAGTGGGTATGCAACTACCTTCTCAAACTCTTTTTTCTGTTTCTTCACTTGATCACGCTTCTCAGGAAGTGGGATCTG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26281803 263 +  26524999 ACACGTGATTTTATTACAAACGCACTGAAACTTTACTA---GTCTTTTATTTTTCCTATTTGGCTTCGCAGAAAGGGCGGCATCGTTAAGAATTTTCTTTGATGTGGTTTTATAATGGTAATGGCTTCCTCTCTATTC------TTTTCCATGAGAATGTTCACTTTAATCCGACTCTGACTGCATGGTTGGAAGAGAGGGTATACGGTAACACTTTCAAACTCTTTGGTTTCTTTCTCGGCTCTTGCACACCGGTCACGTGTGGGCCTCTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             8012 264 -     22419 --ACACGACTTTACAGTAAAAGCGCTGAAACTTTACTA---ATCTTTTATTTTTTCTATTTGACTTCTCAAAAAGGGAGGCATAGTCAAGAATTTTCTTTGATGTGGTTTGACAATTGTTT---CTTCCTCTCTATTCCGAGTCTTTTCCATAAGAATACTCACTTTAATCTGGTTTCTGTTGTGTGGCTGGAAAAGGGGATATGCAATGACAGTCTCAAACTCCTTCACCCCTTTCTTTACCTGCCCCTGCTTCTCCTGAGTGGGGGGCAG
i dasNov3.JH569887         C 0 C 0
e aotNan1.NW_018496904v1     302944 943 -    383796 I

a score=9418147.000000
s hg38.chr6_GL000254v2_alt  1401288 552 +   4827813 GCTCTGGCTTCTTCTCAAGATTCTCTCCTTGAGTCTTTGTTCTGCAAGTTCTCTCCCTCGAATCATGCGTTCCTGGTGATCCTTAGTCTGCATCTGTTCCCTCTCATTTACCTGCTTTCTTCTCTGTGCGTTCTGGATGCCATGCCCTTCTGGCATAATTTTTGGTAATTTTGTTT------CATTGGGGGGTTGTAGTACTTGTCTAAATGGTTTGTTCTTAAATTCTCCAGCCTTTCCTGTTTGATGTATGTGCCTTTCTATGTGTTTCATCTCTCTCTCAGGTACCAAACAGTACTGTTTTAGTCCTTCTACGCTCTG---------------------------GGTTGTTTTCTCCTCCATTTTTTTCTAGATTTCATTGCCTGTCTC---TTCTTTCATCATTTCC---ACTATTATTTTATTATAATAAGACTCTGCTTTGGCAAGCCAGTAGTCAAGAGAAACAGCTTGCTCCCTACAGAGTATTTCACACTCCTCCTGATATTTCTGCATTATCAACTGTCTTGCTGCTGTTGTATGCACACCACCTAGATTCTGTCAAAGTGAAG-TCAGAAATTTATAATG--
s panTro5.chr6             30274736 552 + 175400573 GCTCTGGCTTCTTCTGAAGATTCTCTCCTTGAGTCTTTGTTCTGCAAGTTCTCTCCCTCGAATCATGCGTTCCTGGTGATCCTTAGTCTGCATCTGTTCCCTCTCATTTACCTGCTTTCTTCTCTGTGCGTTCTGGATGCCATGCCCTTCTGGCATAATTTTTGGTAATTTTGTTT------CATTGGGGGGTTGTAGTACTTGTCTAAATGATTTGTTCTTAAATTCTCCAGCCTTTCCTGTTTGATGTATGTGCCTTTCTATGTGTTTCATCTCTCTCTCAGGTACCAAACAGTACTGTTTTAGTCCTTCTACGCTTTG---------------------------GGTTGTTTTCTCCTCCATTTTTTTCTTGATTTCATTGCCTGTCTC---TTCTTTCATCATTTCC---ACTATTATTTTATTATAATAAGACTCTGCTTTGGCAAGCCAGTAGTCAAGAGAAACAGCTTGCTCCCTACAGAGTATTTCACACTCCTCCTGATATTTCTGAATTATCAACTGTCTTGCTGCTGTTGTATGCACACCACCTAGATTCTGTCAAAGTGAAG-TCAGAAATTTATAATG--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30505282 552 + 173848474 GCTCTGGCTTCTTCTGAAGATTCTCTCCTTCAGTCTTTGTTCTGCAAGTTCTCTCCCTCGAATCATGCGTTCCTGGTGATCCTTAGTCTGCATCTGTTCCCTCTCATTTACCTGCTTTCTTCTCTGTGCGTTCTGGATGCCATGCCCTTCTGGCATAATTTTTGGTAATTTTGTTT------CATTGGGGGGTTGTAGTCCTTGTCTAAATGATTTGTTCTTAAATTCTCCAGCCTTTCCTGTTTGATGTATGTGCCTTTCTATGTGTTTCATCTCTCTCTCAGGTACCAAACAGTACTGTTTTAGTCCTTCTATGCTTTG---------------------------GGTTGTTTTCTCCTCCATTTTTTTCTTGATTTCATTGCCTGTCTC---TTCTTTCATCATTTCC---ACTATTATTTTATTATAATAAGACTCTGCTTTGGCAAGCCAGTAGTCAAGAGAAACAGCTTGCTCCCTACAGAGTATTTCACACTCCTCCTGATATTTCTGAATTATCAACTGTCTTGCTGCTGTTGTATGCACACCACCTAGATTCTGTCAAAGTGAAG-TCAGAAATTTATAATG--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     211831 552 +   2037526 GCTCTGGTTTCTTCTCAAGATTCTCTCCTTGAGTCTTTGTTCTGTAAGTTCTCTCCCTCGAATCATGCGTTCCTGGTGATCCTTAGTCTGCATCTGTTCCCTCTCATTTACCTGCTTTCTTCTCTGTGCGTTCTGGATCCCATGCCCTTCTGGCATAATTTTTGGTAATTTTGTTT------CATTGGGGGGTTGTAGTACTTATCTAAATGATTTGTTCTTAAATTCTCCAGCCTTTCCTGTTTGATGTATGTGCCTTTCTATGTGTTTCATCTGTCTCTCAGGTACCAAACAGTACTGTTTTAGTCCTTCTACGCTTTG---------------------------GGTTGTTTTCTCCTCCATTTTTTTCTTGATTTCATTGCCTGTCTC---TTCTTTCATCATTTCC---ACTATTATTTTATTATAATAAGACTCTGCTTTGGCAAGCCAGTAGTCAAGAGAAACAGCTTGCTCCCTACAGAGTATTTCACACTCCTCCTGATATTTCTGAATTATCAACTGTCTTGCTGCTGTTGTATGCACACCACCTAGATTCTGTCAAAGTGAAG-TCAGAAATTTATAATG--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74884801 552 + 122973662 GCTCTGGCTTCTTCTCAAGATTCTTTCCTTGAGTCTTTGCTCTGTAAGTTCTCTCCCTTGAATCATGCGTTCCTGGTGATCCTTAATCTGCATCTGTTCCCTCTCATTTACCTGCTTTCTTCTCTGTGTGTTCTGGATGCCATGCCCTTCTGGCATAAATTTTGGTAATTTTGTTT------CATTGGGGGGTCGTAGTACTTGTCTAAATGATTTGTTCTTAAATTCTCCAGCCTTTCCTGTTTGATGTACGTGCCTTTCTATGTGTTTCATCTCTCTCTCAGGTACCAAATAGTACTGTTTTAGTCCTTCTACGCTTTG---------------------------GGTTGTTTTCTCCTCCATTTTTTTCTTGATTTCATTGCCTGTCTC---TTCTTCCATCATTTCC---ACTATTATTTTATTATAATAAGACTCTGCTTTGGCAAGCCAGTAGTCAAGAGAAACAGCTTGCTCCCTACAGAGTATTTCACGCTCCTCCTGATATTTCTGAATTATCAACTGTCTTGCTGCTGTTGTATGTACACCACCTAGATTCCGTCAAAGTGAAG-TCAGAAATTTACAATG--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30758553 552 + 172585720 GCTCTGGCTTCTTCTTAAGATCCTTTCCTTGAGTCTTTGCTCTGTAAGTTCTCTCCCTCGAATCATGCGTTCCTGGTGATCCTTAATCTGCATCTGTTCCCTGTCATTTACCTGCTTTCTTCTCTGTGCGTTCTGGATGCCATGCCCTTCTGGCACAATGTTTGGTAATTTTGTTT------CACTGGGGGGTAGCAGTACTTGTCTAAATGATTTGTTCTTAAATTCTCCAGCCTGTCCTGTTTGATGTATGTGCCTTTGTATGTGTTTCACCTCTCTCTCAGGTATCAAATGGCACTGTTTTAGTCCTTCTATGTTTCG---------------------------GGTTGTTTTCTTCTCCATTTTTTTCTTGATTTCATTGGCTGTCTC---TTCTTTCATCATTTCC---AATATTATTTTATTATAATAAGACTCTGCTTTGGCAAGCCAGTAGTCAAGAGAAACAGCTTGCTCCCTACAGAGGATTTCACACTCCTCCTGATATTTCTGAGTTATCAACTGTCTTGCTGCTGTTGTATGCACACCACCTAGATTCTGTCAAAGTGAAG-TCAGAAATTTATAATG--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30053696 552 - 170955103 GCTCTGGCTTCTTCTTAAGATCCTTTCCTTGAGTCTTTGCTCTGTAAGTTCTCTCCCTCGAATCATGCGTTCCTGGTGATCCTTAATCTGCATCTGTTCCCTGTCATTTACCTGCTTTCTTCTCTGTGCGTTCTGGATGCCATGCCCTTCTGGCACAATGTTTGGTAATTTTGTTT------CACTGGGGGGTAGCAGTACTTGTCTAAATGATTTGTTCTTAAATTCTCCAGCCTGTCCTGTTTGATGTATGTGCCTTTGTATGTGTTTCACCTCTCTCTCAGGTATCAAATGGCACTGTTTTAGTCCTTCTATGTTTCG---------------------------GGTTGTTTTCTTCTCCATTTTTTTCTTGATTTCATTGGCTGTCTC---TTCTTTCATCATTTCC---AATATTATTTTATTATAATAAGACTCTGCTTTGGCAAGCCAGTAGTCAAGAGAAACAGCTTGCTCCCTACAGAGGATTTCACACTCCTCCTGATATTTCTGAGTTATCAACTGTCTTGCTGCTGTTGTATGCACACCACCTAGATTCTGTCAAAGTGAAG-TCAGAAATTTATAATG--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     302982 552 +   1495729 GCTCTGGCTTCTTCTTAAGATCCTTTCCTTGAGTCTTTGCTCTGTAAGTTCTCTCCCTCGAATCATGCGTTCCTGGTGATCCTTAATCTGCATCTGTTCCCTGTCATTTACCTGCTTTCTTCTCTGTGCGTTCTGGATGCCATGCCCTTCTGGCACAATGTTTGGTAATTTTGTTT------CACTGGCGGGTAGCAGTACTTGTCTAAATGATTTGTTCTTAAATTCTCCAGCCTGTCCTGTTTGATATATGTGCCTTTCTATGTGTTTCACCTCTCTCTCAGGTATCAAATGGCACTGTTTTAGTCCTTCTATGTTTCG---------------------------GGTTGTTTTCTTCTCCATTTTTTTCTTGATTTCATTGCCTGTCTC---TTCTTTCATCATTTCC---AATATTATTTTATTATAATAAGACTCTGCTTTGGCAAGCCAGTAGTCAAGAGAAACAGCTTGCTCCCTACAGAGGATTTCACACTCCTCCTGATATTTCTGAGTTATCAACTGTCTTGCTGCTGTTGTATGCACACCACCTAGATTCTGTCAAAGTGAAG-TCAGAAATTTATAATG--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     401030 552 -    863181 GCTCTGGCTTCTTCTTAAGATTCTTTCCTTGAGTCTTTGCTCTGTAAGTTCTCTTCCTCGAATCATGCGTTCCTGGTGATCCTTAATCTGCATCTGTTCCCTGTCATTTACCTGCTTTCTTCTCTGTGCGTTCTGGATGCCATGCCCTTCTGGCACAATGTTTGGTAATTTTGTTT------CACTGGGGGGTAGCAGTACTTGTCTAAATGATTTGTTCTTAAATTCTCCAGCCTGTCCTGTTTGATGTATGTGCCTTTCTATGTGTTTCACCTCTCTCTCAGGTATCAAATGGCACTGTTTTAGTCCTTCTATGTTTCG---------------------------GGTTGTTTTCTTCTCCATTTTTTTCTTGATTTCATTGCCTGTCTC---TTCTTTCATCATTTCC---AATATTATTTTATTATAATAAGACTCTGCTTTGGCAAGCCAGTAGTCAAGAGAAACAGCTTGCTCCCTACGGAGGATTTCACACTCCTCCTGGTATTTCTGAGTTATCAACTGTCTTGCTGCTGTTGTATGCACACCACCTAGATTCTGTCAAAGTGAAG-TCAGAAATTTATAATG--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29553070 552 -  71996105 GCTCTGGCTTCTTCTTAAGATTCTTTCCTTGAGTCTTTGCTCTGTAAGTTCTCTCCCTCGAATCATGCGTTCCTGGTGATCCTTAATCTGCATCTGTTCCCTCTCATTTACCTGCTTTCTTCTCTGTGCGTTCTGGATGCCATGCCCTTCTGGCACAATGTTTGGTAATTTTGTTT------CACTGGGGGGTCGCAGTACTTGTCTAAATGATTTGTTCTTAAATTCTCCAGCCTGTCCTGTTTGATGTATGTGCCTTTCTATGTGTTTCACCTCTCTCTCAGGTATCAAATGGCACTGTTTTAGTCCTTCTATGCTTCG---------------------------GGTTGTTTTCTTCTCCATTTTTTTCTTGATTTCATTGCCTGTCTC---TTCTTTCATCATTTCC---ACTATTATTTTATTATAATAAGACTCTGCTTTGGCAAGCCAGTAGTCAAGAGAAACAGCTTGCTCCCTACAGAGGATTTCACACTCCTCTTGATATTTCTGAGTTATCAACTGTCTTGCTGCTGTTGTATGCACACCACCTAGATTCTGTCAAAGTGAAG-TCAGAAATTTATAATG--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     235773 552 -    735854 GCTCTGGCTTCTTCTTAAGATTCTTTCCTTGAGTCTTTGCTCTGTAAGTTCTCTCCCTCGAATCATGCGTTCCTGGTGATCCTTAATCTGCATCTGTTCCCTCTCATTTACCTGCTTTCTTCTCTGTGCGTTCTGGATGCCATGCCCTTCTGGCACAATGTTTGGTAATTTTGTTT------CACTGGGGGGTCGCAGTACTTGTCTAAATGATTTGTTCTTAAATTCTCCAGCCTGTCCTGTTTGATGTATGTGCCTTTCTATGTGTTTCACCTCTCTCTCAGGTATCAAATGGCACTGTTTTAGTCCTTCTATGCTTCG---------------------------GGTTGTTTTCTTCTCCATTTTTTTCTTGATTTCATTGCCTGTCTC---TTCTTTCATCATTTCC---ACTATTATTTTATTATAGTAAGACTCTGCTTTGGCAAGCCAGTAGTCAAGAGAAACAGCTTGCTCCCTATAGAGGATTTCACACTCCTCCTGATATTTCTGAGTTATCAACTGTCTTGCTGCTGTTGTGTGCACACCACCTAGATTCTGTCAAAGTGAAG-TCAGAAATTTATAATG--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     191115 552 -   1829203 GCTCTGGCTTCTTCTTAAGATTCTTTCCTTGAGTCTTTGCTCTGTAAGTTCTCTCCCTCGATTCATGCGTTCCTGGTGATCCTTAATCTGTATCTGTTCCCTCTCATTTACCTGTTTTCTTCTCTGTGCGTTCTGGATGCCATGCCCTTCTGGCACAATGTTTGGTAATTTTGTTT------CACTGGGGGGTCGCAGTACTTGTCTAAATGATTTGTTCTTAAATTCTCCAGCCTGTCCTGTTTGATGTATGTGCCTTTCTATGTGTTTCACCTCTCTCTCAGGTATCAAATGGCACTGTTTTAGTCCTTCTATGCTTCG---------------------------GGTTGTTTTCTTCTCCATTTTTTTCTTGATTTCATTGCCTGTCTC---TTCTTTCATCATTTCC---ACTATTAGTTTATTATAATAAGACTCTGCTTTGGCAAGCCAGTAGTCAAGAGAAACAGCTTGCTCCCTACAGAGGATTTCACACTCCTCCTGATATTTCTGAGTTATCAACTGTCTTGCTGCTGTTGTATGCACACCACCTAGATTCTGTCAAAGTGAAG-TCAGAAATTTATAATG--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30361967 548 + 171630274 GCTCTGGCTTCTTCTCAAGATTCTTTCCTTGAGTCTTTGCTCTGTAAGTGCTCTCCCTTGAATCATGCGTTCCTGGTGATCCTAAATTTGCATCTGTTTCCTCTCATTTACCTGCTTTCTTCTCTGTGCATTCTGGATGCCATGCCCTTCTGGCATAATTTTTGGTAATTTTGTTT------CACTGGGGAGTTGTAGCACTTGTCTAAGTGATTTGTTCTTAGATTTTCTAGCCTGTCCTGTATGATGTATGTGCCTTTCTATGTGTTTCATCTCTCTCTCAGGTACCAAATAATACTGTTTTAGTC---CTGTGCTTTG---------------------------GGTTGTTTTCCCCTTCATTTTTTTCTTGATTTCATTGCCAGTCTC---TTCTTTCATCATTTCC---AGTATTCTTTTATGATGAAAAGACTCTGCTTTGGCAA-CCAGTAGTCAAGAGAAAGAGCTTTCTCCCTACAGAGTGTTACATACTCATCTTGATATTTCTGAGCTACCAACCGTCTTGCTGCTGTTGTATGCAGACCACCTAGATTCTGTCAAAGTGAAG-TTAGGAATTTACGATA--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           185342 555 +    515838 GCTCTGGCTTCTTCTCAAGATTCTTTCCCTGAGTCTTTGCTCTGTAAGTGCTCTCCCTCGAATCATGCGTTCCTGGTGATCCTTAATTTGCATCTGTTCCCTCTCATTTACCTGCTTTCTTCTCTGTGCATTCCAGATGCCATGCCCTTCTGGCATAATTTTTGGTAATTTTGTTT------CACTGGGGAGTTGTAGTACTTGTCTAAATGATTTGTTCTTAGATTTTCTAGCCTGTCCTGTATAATTTATGTGCCTTTCTATGTGTTTCATCTCTCTCTCAGGTACCAAATAGCACTGTTTTAGTCCTTCTGTGCTTTG---------------------------GGTTGTTTTCCCTTTCATTTTTTTCTTGATTTCAGTGCCGGTCTC---TTCTTTCATCATTTCCAGTAGTATTCTTTTATGATAAAAAGATTCTGCTTTGGCAAGCCAGTAGTCAAGAGAAAGAGCTTGCTCTTTACAGAGTATTTCATACTCATCTTGATATTTCTGAGTTATCAACTGTCTTGCTGCTGTTGTATGCACACCACCCAGATTCTGTCAAAGTGAAG-TCAGGAATTTATAATG--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     817855 552 -   1771730 GCTCTGGCTTCTTCTCAAGATTCTTTCCTTGAGTCTTTGCTCTGTAAGTGCTCTCCCTCGAATCATACGTTCCTGGTGATCCTTAATTTGCATCTGTTCCCTCTCATTTACCTGCTTTCTTCTCTGTGCATTCTGGATGCCATGCCCTTCTGGCATAATTTTTGGTAATTTTGTTT------CACTGGGGAGTTGTAGTACTTGTCTAAATGATTTGTTCTTAGATTTTCTAGCCTGTCCTGTACAATGTATGTGCCTTTCTATGTGTTTCATCTCTCTCTCAGGTACCAAACAGTACTGTTTTAGTCCTTCTGTGCTTTG---------------------------GGTTGTTTTCCCCTTCATTTTTTTCTTGATTTCATTGCCGGTCTC---TTCTTTCATCATTTCC---AGTATTCTTTTATGATAAAAAGACTCTGCTTTGGCAAGCCAGTAGTCAAGAGAAAGAGCTTGCTCCCTACAGAGTATTTCATACTCATCTTGATATTTCTGAGTTATCAACCGTCTTGCTGCTGTTGTATGCACACCACCCAGATTCTGTCAAAGTGAAG-TCAGGAATTTATAAAG--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     303887 546 -    383796 GCTCTGGCTTCTTCTC--GATTCTTTCCTTGAGTCTTTGCTCTGTAAGTGCTCTCCCTCAAATCATGCGTTCCTGGTGATTCTTAATTTGCATCTGTTCCCTCTCATTTATCTGCTTTCTTCTCTGTGCATTCTGGATGCCATGCCCTTCTGGCATAATTTTTGGTAATTTTGTTT------CACTGGGGAGTTATAGTACTTGTCTAAATTATTTGTTCTTAGATTTTCTAGCCTGTCCTGTACGACGTATGTGC----CTATGTGTTTCCTCTCTCTCTCAGGTACCAAATAGTACTGTTTTAGTCCTTCTATGCTTTG---------------------------GGTTGTTTTCCCCTTCATTTTTTTCTTGATTTCATTGCCAGTCTC---CTCTTTCATCATTTCC---AGTATTCTTTTATGATAAAAAGACTCTGCTTTGGCAAGCCAGTAGTCAAGAGAAAGAGCTTGCTCCCTACAGAGTATTTCATACTCATCTTGATATTTCTGAGTTATCAACCGTCTTGCTGCTGTTGTATGCACACCACCCAGATTCTGTCAAAGTGAAG-TCAGGAATTTATAATG--
i aotNan1.NW_018496904v1   I 943 C 0
s micMur3.chr6               282073 556 + 123392446 ACTCTGGCTTTTTCTCAAGATTCTTTCTTTGAGTCTTTGCTCTGTAAGTTCTCTCCCTCGAATCATGCGTTCCTGATGATCTTTAATTTGCATCTGTTCCCTCTCATTTGCCTGTTTTCTTCTCTGTGCATTGTCGATACTGTGCTCTTCTGACATAATTTTTGGTAATGTTGTTT------CACTGAGAGGTTGTAGTACTTGTTTAAATGTTTTGTTCGTAAATTCTCTGGCCTGTCCTGTTCTATGTATATGCCTCTCTATATGTTTCTTCTCTCTCTCATGTACCAAATAGCACCGTTTTAGTCCTTCTATGCTTTG---------------------------GGTTGTTTTCCCCTCCATTTTCTTCTTGATTTCATTAGCTGTCTCTTTTTCTTTCATCATTTCC---ACTATTCTTTTATTATAATAAGACTCTGCTTTGGCAAGCCAGTAGTCAAGAGAAAGGGCTTGCTCCCTACAGAGTGTTTCATACTCCTCTTGATATCTCTGAGTTATCAACTGTCTTGCTGCTGTTGTATGCACGCCACCTAGATTCTGTCAAAGTGAGGTTCAGAACTTTATAATG--
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      87394 554 -   1411461 ACTCTGGCTTTTTCTCAAGATTCTTTCTTTGAGTCTTTGCTCTGTAAGTTCTCTCCCTCGAATCATGCGTTCCTGATGATCTTTAATTTGCATCTGTTCCCTCTCATTTGCCTGTTTTCTTCTCTGTGCATTGTGGATGCCGTCCTCTTCTGGCACAATTTTTGGTAATGATGTTT------CACTGAGAGGTCGTAGTACTTGTTTAAATGTTTTGTTCTTAAGTTCTCTGGCTTGTCCTGTTCGATATATGTGCCTCTCCGTGTGTTTCTTCTCTCTCTCACGTACCAAATAGTACCGTTTTAGTCCTTCTATGCTTTG---------------------------GGTTGTTTTCCCCTCCATTTTCTTCTTGATTTTATTAGCTGTCTCTTCTTCTTTCATCATTTCC---ACTATTCTTTTAATATAATAAGA--CTGCTTTGGCAAGCCAGTAGTCAAGAGAAAGGGCTTGCTCCCTACAGAGTGTTTCATACTCCTCTTGGTATCTCTGAGTTATCAACTGTCTTGCTGCTGTTGTATGCACGCCACCTAGATTCTGTCAAAGTGAGGTTCAGAACGTTATAATG--
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           229747 562 +  18854210 GATGTGACTTTTTCTCAAGATTCCTTCTCTGAGTCTTTGCTCTATAAGTTCCCTCCCTCGAATCATGCGTTCCTGATGATGTTTAATTTGCTTCTGTTCCCTCTCATATACCTGCTTTTTTCTCTGTGCACTGTGAATGCCATGCTCTGCTGGCATAATTTTTGGTAATGTTTCCCTTACAACAGCAAGGGGTTGTCGTACTTCTTTAACTGTTTTGTTCTGAAATTCTCTGGCCTGTCCCGTTCGATGTATATGCCTTTCTATCTGTTTCACCTCTCTCTCAGGCACCAAATAGTACCGTTTTAGTCCGTCTGTGCTTTG---------------------------TGTTGTTTTCCCCTCTATTTTCTTCTTGATTTCATTATCTGTCTCTTCTTCTTTCACCATTTCC---ACTATTCTTCTATTGTAATAAGATTCTGCTTTGGCAAGCCAGTAGTCAAGGGAAAGAGCTTGCTCCCTACAGAGTGTTTCATATTCCTCTTGATATTTCTGAGTTATCAATTGTCTTGCTGCTGTTGTATGCACACCACCTAGATTCTGTCAAAGTGAGGTTCAGAATTTTATAATG--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58021892 576 -  94987271 ACTCGGGCTTTTTCTCAAGATTCTGTCTTTGAGCCTTTGCTGTAGAAGTTCCCTCCCTCGAATCATGCGCTCCCGGTGATCTTTAATTTGGAGCAGTTCTCTCTCGTGTGCCTGCCTTCTTTTCTGTGCTTGTGGGATGCTTTCCTCCTCTAGCACAATTTTGGGTAGTGTTGTTT------CACTGAAGAGTCGTGGC---TGTCTCCAGGGTTTGTCTGTAAATTCTCTGGCATGGCTTGTTCTATGAATGTGCCTTTCTATTTGCTTCTTCTCTCTCTCAGGCACCCAGTAATGCTGTTTCTGTCTCTCTCTGCgtggtggtggtggtggtggtggtgatggtgatggtggtTCCTCTTGCACTTTTGTCTTTGTTTCATCACCTGTGTC---TTTTTTCATTCTCTCC---ACCATTCTCTTATTATAATACGACTCTGCTTTTGCAAGCCAGTAGTCCAGAGAATTAGCTTGCTCCTTGCAGAGTGCTTTGCTCTCCTCATGGCATTTCTGAGTTATCAAGTGTCTTGCTGCTGTTGTATGCACACCACCAAAACTCTGTCAAAGTGAGTTTTAGAATTTTGTAAG---
i mm10.chr17               C 0 C 0
s canFam3.chr35            26282066 547 +  26524999 GCTCCGGCCTTGTCTCAGGACTCCTTCCTGGAGCCTCTGCTCCAGGACCTCTCTTCCCTGGAGCATGCGCTGCTGGTGATCTTTGATCTGTATCTGCTCCCGCTCGCTTACCTGCTTCCTCCTCTGTGTGCCCAGGACACCACGCTCTTCTGGCAGGATCCTCGGGAACTTTGTTT------CACTAG---GCCGTGGTAGGTGCCGGCCTGCTTTGTTCTTGAGCTCTCTGACCTGCCCCACGCGGTGTATGTGCCTCTCTATGTGCTTCAACTCCCGGTCAGGAACCAAGTAATACCGCTTCAGTTTCTCTAGGTTTTG---------------------------GGTCATCCTTCCCTCCAATTTCT------TTTCATGGCCTGTGTCTTGTTCTTTCATCATATCC---ACTATCCTCTTATTGTAATAGGACTCTGCCTTGGCAAGCCAGTAGTCGAGAGACAGAGCCTGCTCCCTGCACAGTGCTTCGTATTCCTCCTGGTACTTCTGGGTTATCAGCTGCCGTGCTGCCGTGCTATGCACACCACCTAGGTTCTGTCAAAGTGGGGCAGAGAATTTTATAATG--
i canFam3.chr35            C 0 I 128
s dasNov3.JH569887             8276 549 -     22419 TCTCTGCTCTCTCCCCAAGAGCCTTGCCTTGAGCTTTCGCTCTAGAAGTTCTCTCCCTCGAATCATGCGCTGCTGGTGCTCTTTAATCTGCACCTGCTCCCTCTCGTTGACCT---TTCTTCTCTGTGCCTTCTGGATGCCATGCGCTTCCGGCATAATTTTCGGTAGCGTCATCT------CGCTGGAGACCCTGAGC---TGCCTGGACGACTTCATCCTCAGCTCCCTGGCCTGGCCTGCTCGATGCACGTGCCTCTCTATGTGTTTCAGCTCTCTGTCAGGCACTAGGTAGAACCGTTTCTGTCTCTCTATGCCTTG---------------------------GATTGTTTTCTCCACCTCTATTTTCTCAATTTCACTGCCTGACTTTTGTTCTTTCATGATTTCC---ACTATTCTTTTATTATAGTAAGACTCTGCTTTGGCAAGCCAGTAATCAAGAGAAAGCACCTGCTCCCTGCACAGGGTTTCATACTCCTCTCGGGACTTCTGCGTTATCAGTCTTCTTGCTGCTGTTGTGTGCACACCACCCAGGCTCTGTCAAAGTGAGG---AACAGGCTGTAAAGCG
i dasNov3.JH569887         C 0 C 0

a score=938108.000000
s hg38.chr6_GL000254v2_alt  1401840 78 +   4827813 ---TGATCATCTTTTTCCTTT--GAACACA-TTTAAACAGGAGCCAAGCCCACCCTCCCTAATGACA---------------------CCAGGAAAAGCTACATG
s panTro5.chr6             30275288 78 + 175400573 ---TGATCATCTTTTTCCTTT--GAACACA-TTTAAACAGGAGCCAAGCCCACCCTCCCAAATGACA---------------------CCAGGAAAAGCTACATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30505834 78 + 173848474 ---TGATCATCTTTTTCCTTT--GAACACA-TTTAAACAGGAGCCAAGCCCACCCTCCCAAATGACA---------------------CCAGGAAAAGCTACATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     212383 78 +   2037526 ---TGATCATCTTTTTCCTTT--GAACACA-TTTAAACAGGAGCCAAGCCCACCCTCCCCAATGACA---------------------CCAGGAAAAGCTACATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74885353 78 + 122973662 ---TGATCATCTTTTTCCTTT--GAACACA-TTTAAACAGGAGCCAAGCCCACCCTGCCTAATGACA---------------------CCAGGAAAAGCTACATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30759105 77 + 172585720 ---TGATCATCTTTTTCCTTT--GAACGCA-TTTAAACAGGAGCCAAGCCCACCCTCCCTAACGATA---------------------CCA-GAACAGCTACATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30054248 77 - 170955103 ---TGATCATCTTTTTCCTTT--GAACGCA-TTTAAACAGGAGCCAAGCCCACCCTCCCTAACGATA---------------------CCA-GAACAGCTACATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     303534 77 +   1495729 ---TGATCATCTTTTTCCTTT--GAACGCA-TTTAAACAGGAGCCAAGCCCACCCTCCCTAACGATA---------------------CCA-GAACAGCTACATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     401582 77 -    863181 ---TGATCATCTTTTTCCTTT--GAACGCA-TTTAAACAGGAGCCAAGCCCACCCTCCCTAACGATA---------------------CCA-GAACAGCTACATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29553622 77 -  71996105 ---TGATCATCTTTTTCCTTT--GAACACA-TTTAAACAGGAGCCAAGCCCACCCTCCCTAATGATA---------------------CCA-GAACAGCTACATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     236325 77 -    735854 ---TGATCATCTTTTTCCTTT--GAACACA-TTTAAACAGGAGCCAAGCCCACCCTCCCTAATGATA---------------------CCA-GAACAGCTACATG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     191667 77 -   1829203 ---TGATCATCCTTTTCCTTT--GAACACA-TTTAAACAGGAGCCAAGCCCACCCTCCCTAACGATA---------------------CCA-GAACAGCTACATG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30362515 80 + 171630274 ---TGATCATCTTTTTCCTTTGAGAACACA-TTTAAACAAGATCCAAGCCCACCCTCCCTACTGACA---------------------CCAGGAAAAGCTAGATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           185897 80 +    515838 ---TGATCATCTTTTTCCTTTGAGAACACA-TTTAAACAAGATCCAAGCCCACCCTCCCTACTGACA---------------------CCAGGAAAAGCTAGATG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     818407 80 -   1771730 ---TGATCATCTTTTTCCTTTGAGAACACA-TTTAAACAAGATCCGAGCCCACCCTCCCTACGGACA---------------------CCAGGAAAAGCTAGATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     304433 80 -    383796 ---TCATCATCTTGTTCCTTTGAGAACACA-TTTAAACAAGATCCAAGCCCACCCTCCCTACTGACA---------------------AGAGGAAAAGCTAGATG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               282629 73 + 123392446 ---AGATCACCTTTTTCCTTT--GAACACA-TTTAAACAG-----AAGCCTCCCCTCCCTATAGACA---------------------CCAAGAAAAGCTATGTG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      87948 73 -   1411461 ---TGATCATCTTTTTCCTTT--GAACACATTTTAAACAG-----AACCCT-ACCTTCCTATTGACA---------------------CCAAGAAAAGCTATATG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           230309 73 +  18854210 ---TGATCATCTTTTTCCTTT--GAATACA-TTTAAATGC-----AAGTCTACCCTCTCTATTGACA---------------------CCAAGAAAAGCTACATG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58022468 84 -  94987271 ------------TTTTCCTTT--AAACACA-TTTAAAAG------AAGTTTGCCTTCTCCAGTACAAGTATAAGGAGGGAGTCTTGGGCCAGGAGTGGTAGCATG
i mm10.chr17               C 0 I 54
s dasNov3.JH569887             8825 64 -     22419 TGGCTGCCACCCTCCCGCTCA--GGCTGCA-TCTAGAG-------GAGCCTACTCTCACCACTGTCA---------------------CCAAGCA----------
i dasNov3.JH569887         C 0 C 0
e canFam3.chr35            26282613 128 +  26524999 I

a score=1258910.000000
s hg38.chr6_GL000254v2_alt  1401918 105 +   4827813 CTC-----TTTACTTTAGCTTAG---TTGTTA-TTTTATTCCCAT-------------------CACTCCCAGGT--------------------------GAGCCTG----GGAGCTCTGAAAGTATTAAGTACT----CACCACCAC----------------------AAATCAGTAA-----CTAGGTTT
s panTro5.chr6             30275366 100 + 175400573 CT----------CTTTAGCTTAG---TTGTTA-TTTTATTCCCAT-------------------CACTCCCAGGT--------------------------GAGCCTG----GGAGCTCTGAAAGTATTAAGTACT----CACCACCAC----------------------AAATCAGTAA-----CTAGGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30505912 100 + 173848474 CT----------CTTTAGCTTAG---TTGTTA-TTTTATTCCCAT-------------------CACTCCCAGGT--------------------------GAGCCTG----GGAGCTCTGAAAGTATTAAGTACT----CACCACCAC----------------------AAATCAGTAA-----CTAGGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     212461 105 +   2037526 CTC-----TTTACTTTAGCTTAG---TTGTTA-TTTTATTCCCAT-------------------CACTCCCAGGT--------------------------GAGCCTG----GGAGCTCTGAAAGTATTAAGTACT----CACCACCAC----------------------AAATCAGTAA-----CTAGGTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74885431 105 + 122973662 CTC-----TTTACTTTAGCTTAG---TTGTTA-TTTTATTCCCAT-------------------CACTCCTAGGT--------------------------GAGCCTG----AGAGCTCTGAAAGTATGAAGTACT----CACCACCAC----------------------AAATCAATAA-----CTAGTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30759182 101 + 172585720 CTC-----TTTACTTTAGC-------TTCTTA-TTTTATTCCCAT-------------------CACTCCCAGGT--------------------------GAGCCTG----TGAGCTCTGAAAGTATGAAGTAGT----CACCACCAC----------------------AAATCAGTAA-----GTAGTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30054325 101 - 170955103 CTC-----TTTACTTTAGC-------TTGTTA-TTTTATTCCCAT-------------------CACTCCCAGGT--------------------------GAGCCTG----TGAGCTCTGAAAGTATGAAGTAGT----CACCACCAC----------------------AAATCAGTAA-----GTAGTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     303611 101 +   1495729 CTC-----TTTACTTTAGC-------TTGTTA-TTTTATTCCCAT-------------------CACTCCCAGGT--------------------------GAGCCTG----TGAGCTCTGAAAGTATGAAGTAGT----CACCACCAC----------------------AAATCAGTAA-----GTAGTTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     401659 101 -    863181 CTC-----TTTACTTTAGC-------TTGTTA-TTTTATTCCCAT-------------------CACTCCCAGGT--------------------------GAGCCTG----TGAGCTCTGAAAGTATGAAGTAGT----CATCACCAC----------------------AAATCAGTAA-----GTAGTTTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29553699 101 -  71996105 CTC-----TTTACTTTAGC-------TTGTTA-TTTTATTCCCAT-------------------CACTCCCAGGT--------------------------GAGCCTG----TGAGCTCTGAAAGTATGAAGTAGT----CACCACCAC----------------------AAATCAATAA-----GTAGTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     236402 101 -    735854 CTC-----TTTACTTTAGC-------TTGTTA-TTTTATTCCCAT-------------------CACTCCCAGGT--------------------------GAGCCTG----TGAGCTCTGAAAGTATGAAGTAGT----CACCACCAC----------------------AAATCAATAA-----GTAGTTTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     191744 101 -   1829203 CTC-----TTTACTTTAGC-------TTGTTA-TTTTATTCCCAT-------------------CACTCTCAAGT--------------------------GAGCCTG----TGAGCTCTGAAAGTATGAAGTAGT----CACCACCAC----------------------AAATCAATAA-----GTAGTTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30362595 110 + 171630274 CTCT----TTTACTTTAGCTCAATAATTATTATTTTTATTCCCAT-------------------CACTCGCAGGT--------------------------GAGCCTG----TGAGCTCTGAAAGCATGAAGTATT----CACTACCAC----------------------AAATCAATAA-----CTAGTTTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           185977 114 +    515838 TTCTTTTATTTACTTTAGCCTAATAACTATTATTTTTATTCCCAT-------------------CACTCTCAGGT--------------------------GAGCCTG----TGAGCTCTGAAAGTATGAAGTATT----CACTACCAC----------------------AAATCAGTAA-----CTAGTTTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     818487 114 -   1771730 CTTTTTTATTTACTTTAGCTTAATAATTATTATTTTTATTCCCAT-------------------CACTCCCAGGT--------------------------GAGCCTG----TGAGCTCTGAAAGTATGAAGTATT----CACTACCAC----------------------AAATCAATAA-----CTAGTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     304513 106 -    383796 CTCTTTTATTTACTTTAGCTTAGTAATTATTATTTTTATTCCCAT-------------------CACTCCCAG----------------------------------G----TGAGCTCTGAAAGTATGAAGTATT----CACTACCAC----------------------AAATCAATAA-----CTAGTTTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               282702 113 + 123392446 TTCTTTTATTTACTTTACTATAATAATTGTGA-TTTTACTTCCAT-------------------CACTCCCAGGT--------------------------GAACCTG----TGGCCTCTGAAAGTATGAAGTACT----CACCACCAC----------------------AAATCAACAA-----CTAGTTTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      88021 113 -   1411461 CTCTTTTACTTACTTTAATGTAATAATTGTGA-TTTTACCTCCAT-------------------CACTCCCAGGT--------------------------GAGCCTG----TGACCTCTAAAAGTATGAAGTACT----CACCACCAC----------------------AAATCAACAA-----CTAGTTTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           230382 113 +  18854210 CTCTTTTATTTACTCTAGTGGAGTAATTATGA-TTTTACTACCAT-------------------TCCTCCCAGGT--------------------------GAGCCTG----ATAGCTCTGACAGTGTAAAGTACT----CACCATCAC----------------------AAATCAGTAA-----CTAGGTTT
i otoGar3.GL873550         C 0 I 275
s mm10.chr17               58022606 110 -  94987271 CCCTTTTACTTCCTTTAGAGTAACAGTTTACA-TCTTACACTCCA-------------------TGCTCCCAGGC--------------------------AAGCCTG----GGTGTTCTCAAAGTAGATAGTGCC----CATCCCC-------------------------AATAGATGA-----CCCGTTTT
i mm10.chr17               I 54 C 0
s canFam3.chr35            26282741 179 +  26524999 Ctt-----ttttttgttgtttaatt-ttattt-atttaaccacacacacagagaggcagaggcacaggcacaggcagagggagaagcaggcttcatgcagggagcctgatgtgggactc----aatcctgggtctc----caggatcacgccctgggcccaaggtggtgctaaaccgctgagccacccaggctg
i canFam3.chr35            I 128 C 0
s dasNov3.JH569887             8889 105 -     22419 --------CTTACTTCAATGTAA---TGGTGA-TTTTACTCCCAT-------------------CGCTCCTAGGT--------------------------AAGCCTG----TGCACTCTGAAAGTATGAAGTACCTGCGCATCACCAC----------------------AGATCAATCG-----CTAATTA-
i dasNov3.JH569887         C 0 C 0

a score=1576358.000000
s hg38.chr6_GL000254v2_alt  1402023 111 +   4827813 AAAAATGTATG----GTGTTGGAAGTTTCCAAAAATGATACTTTGTTTTGCAACTGTGGATATAGCTGGGTAACATTTGCCAGTGTAGA----CATACTACCT--GAATGTGTCACTTGGG
s panTro5.chr6             30275466 111 + 175400573 AAAAATGTATG----GTGTTGGAAGTTTCCAAAAATGATACTTTGTCTTGCAACTGTGGATATAGCTGGGTAACATTTGCCAGTGTAGA----CATACTACCT--GAATGTGTCACTTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30506012 111 + 173848474 AAAAATGTATG----GTGTTGGAAGTTTCCAAAAATGATACTTTGTCTTGCAACTGTGGATATAGCTGGGTAACATTTGCCAGTGTAGA----CATACTACCT--GAATGTGTCACTTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     212566 110 +   2037526 AAAAATGTATG----GTGTTGGAAGTTTCCAAAAATGATACTTTGTTTTGCAACTGTGGATATCGCTGGGTAACATTTGCCAGTGTAGA----CATACTACCT--GAATGTGTCACTC-GG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74885536 111 + 122973662 AAAAATGTATG----GTGTTGGAAGTTTTCAAAAATGATACTTTGTTTTGCAACTGTGGATATAGCTGGATAACATTTGCCAGTGTAGA----CATACTACCT--GAATGTGTCACTTGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30759283 110 + 172585720 AAAAATGTATG----GTGTTGGAAGTTTTC-AAAATGATACTTTGTTTTGCAACTGTGGATATAGCTGGGTAACATTTGCCAGTGTAGA----CATACTACCT--GAATGTGTCACTTGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30054426 110 - 170955103 AAAAATGTATG----GTGTTGGAAGTTTTC-AAAATGATACTTTGTTTTGCAACTGTGGATATAGCTGGGTAACATTTGCCAGTGTAGA----CATACTACCT--GAATGTGTCACTTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     303712 110 +   1495729 AAAAATGTATG----GTGTTGGAAGTTTTC-AAAATGATACTTTGTTTTGCAACTGTGGATATAGCTGGGTAACATTTGCCAGTGTAGA----CATACTACCT--GAATGTGTCACTTGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     401760 110 -    863181 AAAAATGTATG----GTGTTGGAAGTTTTC-AAAACGATACTTTGTTTTGCAACTGTGGATATAGCTGGGTAACATTTGCCAGTGTAGA----CATACTACCT--GAATGTGTCACTTGGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29553800 110 -  71996105 AAAAATGTATG----GTGTTGGAAGTTTTC-AAAATGATACTTTGTTTTGCAACTGTGGGTATAGCTGGGTAACATTTGCCAGTGTAGA----CATACTACCT--GAATGTGTCACTTGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     236503 110 -    735854 AAAAATGTATG----GTGTTGGAAGTTTTC-AAAATGATACTCTGTTTTGCAACTGTGGATATAGCTGGGTAACATTTGCCAGTGTAGA----CATACTATCT--GAATGTGTCACTTGGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     191845 110 -   1829203 AAAAATGTATG----GTGTTGGAAGTTTTC-AAAATGATACTTTGTTTTGCAACTGTGGATATAGCTGAGTAACATTTGCCAGTGTAGA----CATACTACCT--GAATGTGTCACTTGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30362705 110 + 171630274 AAAAATGCATG----GTGTTCGAAGTTTTC-AAAATGATTTTTTATTTTGCAACTGTGGCTATAGCTGGGAAACATCTGCCAGTGTAGA----CATACTACCG--GAATGCGTCACTTGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           186091 110 +    515838 AAAAATGCATG----GTGTTGGAAGTTTTC-AAAATGATTCTTTATTTCGCAACTGTGGCTATAGCTGGGAAACATTTGCCAGTGTAGA----CATACTACCG--GAATGTGTCACTTGGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     818601 110 -   1771730 AAAAATGCATG----GTGTTGGAAGTTTTC-AAAATGATTCTTTATTTCACAGCTATGGTTATAGCTGGGAAACATTTGCCAGTGTAGA----CATACTACCG--GAATGTGTCACTTGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     304619 107 -    383796 AAAAATGTATC----GTGTTGGAAGTTTTC-AAAATGATTCTTTATTTTGCAACTGTGGCTATAGCTGGGAAACATTTGCCAGTGTAGA-------ACTACCG--GAATGTGTCACTTGGG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               282815 110 + 123392446 AAAAATATGTA----ATGTTGGGAGTTTTC-AAAATGATATTTTATTTTGTAACTATGGCTATAACTGGTAAACTTTTGCCAGTATAGA----CATATTATCT--GAAGATGTCACTTACA
i micMur3.chr6             C 0 I 344
s proCoq1.NW_012149775v1      88134 109 -   1411461 AAAAATATATA----ATGTTGGGAGTTTTC-AAAATGATACTTTGTTTTGTAACTATGGCCATAACTGGTAAACATTTGCCAGTGTAGA----CATACTA-CT--GAAGATGTCACTTACA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           230770 110 +  18854210 AGGAGTGTATA----GTGTTGGGAGATTTC-AAAATGAAACTTTGTTTTGCAACTGTGGCTATAACTGGGAAACATTTGCCTGGGTAGA----CATACTACCT--GAAGATGTGACTTATG
i otoGar3.GL873550         I 275 C 0
s mm10.chr17               58022716  66 -  94987271 ------------------------------TAAA---------------------GGGGATGCATCTGG--AATACTTAACAGAGTGGAACAGAGTAATGCCT--CAAAGGGTCACCTGTG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26282920  85 +  26524999 ------accTA----GTGTTGGGCATTTTG-AACAGAATAC--TGTTTTGCAGGTATGGATATAG-------------------GTAAA----CATACCCACCAGGGAGGGGTCACCTGCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             8994 112 -     22419 AAAAATAGATAAACTGTGCTGGGAGTTTTC-AAAATGGTACTTTGTTTTGCAACTGTGGATATAGCTGAGAAACATAT--CAGTGTAGA----CTTACTACCT--GAAGGTGTCACTTGGG
i dasNov3.JH569887         C 0 C 0

a score=4454585.000000
s hg38.chr6_GL000254v2_alt  1402134 298 +   4827813 CAGAAGGATTTTAAACCTAAGATTCCTTCTCTGTGTAGTTCCAAACTGTATGATGTGAAGATAATT----TACTTACCAAGATCTTTTTTTCCAGTGGAGACTGCTGACCTGCAGCAATCCTAGGATCTTTAGATGATGTACCCCAGGCCAATCTGGAAGAT-AAAAAAGG---CAAGGTAGATTCAAATGTAGGAGGTGTCAGAAC---------------------------------------------------------------------------------------------------------AAATCTGCTAATAGGGAG------------------------------------------------------------GACT--------------ACAGCA-GGG-CCATTTCCCCCATGGGAAAC--CA-CTGCA-TTCCTATGG--TAGAAAATAATG--AATGCTCTTTTAATAAGAGG---
s panTro5.chr6             30275577 298 + 175400573 CAGAAGGATTTTAAACCTAAGATTCCTTGTCTGTGTAGTTCCAAACTGTATGATGTGAAGATAATT----TACTTACCAAGATCTTTTTTTCCAGTGGAGACTGCTGACCTGCAGCAATCCTAGGATCTTTAGATGATGTACCCCAGGCCAATCTGGAAGAT-AAAAAAGC---CAAGGTAGATTCAAATGTAGGAGGTGTCAGAAC---------------------------------------------------------------------------------------------------------AAATCTGCTAATAGGGAG------------------------------------------------------------GACT--------------ACAGCA-GGG-CCACTTCCCCTATGGGAAAC--CA-CTGTA-TTCCTATGG--TAGAAAATAATG--AATGCTCTTTTAATACGAGG---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30506123 298 + 173848474 CAGAAGGATTTTAAACCTAAGATTCCTTGTCTGTGTAGTTCCAAACTGTATGATGTGAAGATAATT----TACTTACCAAGATCTTTTTTTCCAGTGGAGACTGCTGACCTGCAGCAATCCTAGGATCTTTAGATGATGTACCCCAGGCCAATCTGGAAGAT-AAAAAAGC---CAAGGTAGATTCAAATGTAGGAGGTGTCAGAAC---------------------------------------------------------------------------------------------------------AAATCTGCTAATAGGGAG------------------------------------------------------------GACT--------------ACAGCA-GGG-CCACTTCCCCTATGGGAAAC--CA-CTGCA-TTCCTATGG--TAGAAAATAATG--AATGCTCTTTTAATACGAGG---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     212676 297 +   2037526 CAGAAGGATTTTAAACCTAAGATTCCTTCTCTGTGTAGTTCCAAACTGTATGATGTGAAGATAATT----TACTTACCAAGATC-TTTTTTCCAGTGGAGACTGCTGACCTGAAGCAATCCTACGATCTTTAGATGATGTACCCCAGGCCAATCTGAAAGAT-AAAAAAGC---CAAGGTAGATTCAAATGTAGGAGGTGTCAGAAC---------------------------------------------------------------------------------------------------------AAATCTGCTAATAGGGAG------------------------------------------------------------GACT--------------ACAGCA-GCG-CCATTTCCCCCATGGGAAAC--CA-CTGCA-TTCCTATGG--TAGAAAATAATG--AATGCTCTTTTAATAAGAGG---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74885647 298 + 122973662 CAGAAGGATTTTAAACCTAAGATTCTTTCTCTGTGTAGTTCCAAACTGTATGATGTGAAGATAATT----TACTTACCAATATCTTTTTTTCCAGTGGAGACTGCTGACCTGCAGCAATCCTAGGATCTTTAGATGATGTACTCCAGGCCAATCTGGAAGAT-AAAAAAGC---AAAGATAGATTCAAATTTAGGAGGTGTCAGAAC---------------------------------------------------------------------------------------------------------AAATCTGCTAATAGGCAG------------------------------------------------------------GACT--------------ACAGCC-GGG-CCATTTCCCCCATGGGAAAC--CA-CTGCA-TTCCTATGG--TAGAAAATAATG--AATGCTCTTTTAATAAGAGG---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30759393 298 + 172585720 CAGAAGGATTTTAAACCTAAGATTCCTTCTCTCTGTAGTTCCAAACTGTATGATGTGAAGATGATT----TACTTACCAAGATCTTTTTTTCCAATGGAGACTGCTGACCTGCAGCAATCCTAGGATCTTTAGATGATGTACCCCAGGCCAATCTGAAAGAT-AAAAAAGC---AAAGGTAGATACAAATGTAGGAGGTGTCAGAAC---------------------------------------------------------------------------------------------------------AAACCTGCTAATAGGCAG------------------------------------------------------------GACT--------------ACAGCA-GGG-CCATTTCCCGCATGGGAAAC--CA-CTGCA-TTCCTATGG--TAGAAAATAATG--AATGCTCTTTTAATAAGAGG---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30054536 298 - 170955103 CAGAAGGATTTTAAACCTAAGATTCCTTCTCTCTGTAGTTCCAAACTGTATGATGTGAAGATGATT----TACTTACCAAGATCTTTTTTTCCAATGGAGACTGCTGACCTGCAGCAATCCTAGGATCTTTAGATGATGTACCCCAGGCCAATCTGAAAGAT-AAAAAAGC---AAAGGTAGATACAAATGTAGGAGGTGTCAGAAC---------------------------------------------------------------------------------------------------------AAACCTGCTAATAGGCAG------------------------------------------------------------GACT--------------ACAGCA-GGG-CCATTTCCCGCATGGGAAAC--CA-CTGCA-TTCCTATGG--TAGAAAATAATG--AATGCTCTTTTAATAAGAGG---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     303822 298 +   1495729 CAGAAGGATTTTAAACCTAAGATTCCTTCTCTGTGTAGTTCCAAACTGTATGATGTGAAGATGATT----TACTTACCAAGATCTTTTTTTCCAATGGAGACTGCTGACCTGCAGCAATCCTAGGATCTTTAGATGATGTACCCCAGGCCAATCTGAAAGAT-AAAAAAGC---AAAGGTAGATACAAATGTAGGAGGTGTCAGAAC---------------------------------------------------------------------------------------------------------AAACCTGCTAATAGGCAG------------------------------------------------------------GACT--------------ACAGCA-GGG-CCATTTCCCGCATGGGAAAC--CA-CTGCA-TTCCTATGG--TAGAAAATAATG--AATGCTCTTTTAATAAGAGG---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     401870 298 -    863181 CAGAAGGATTTTAAACCTAAGATTCCTTCTCTGTGTAGTTCCAAACTGTATGATGTGAGGATGATT----TACTTACCAAGATCTTTTTTTCCAATGGAGACTGCTGACCTGCAGCAATCCTAGGATCTTTAGATGATGTACCCCAGGCCAATCTGAAAGAT-AAAAAAGC---AAAGGTAGATTCAAATGTAGGAGGTGTCAGAAC---------------------------------------------------------------------------------------------------------AAACTTGCTAATAGGCAG------------------------------------------------------------GACT--------------ACAGCA-GGG-CCATTTCCCGCATGGGAAAC--CA-CTGCA-TTCCTATGG--TAGAAAATAATG--AATGCTCTTTTAATAAGAGG---
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29553910 298 -  71996105 CAGAAGGATTTTAAACCTAAGATTCCTTCTCTGTGTAGTTCCAAACTGTATGATGTGAAGATAATT----CACTTACCAAGATCTTTTTTTCCAATGGAGACTGCTGACCTGCAGCAATCCTAGGATCTTTAGATGATGTACCCCAGGCCAATCTGAAAGAT-AAAAAAGC---AAAGGTAGATTCAAATGAAGAAGGTGTCAGAAC---------------------------------------------------------------------------------------------------------AAATCTGCTAATAGGCAG------------------------------------------------------------GACT--------------ACAGCA-GGG-CCATTTCCCGCATGGGAAAT--CA-CTGCA-TTCCTATGG--TAGAAAATAATG--AATGCTCTTTTAATAAGAGG---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     236613 298 -    735854 CAGAAGGATTTTAAACCTAAGACTCCTTCTCTGTGTAGTTCCAAACTGTATGATGTGAAGATAATT----TACTTACCAAGATCTTTTTTTCCAATGGAGACTGCTGACCTGCAGCAACCCTAGGATCTTTAGATGATGTACCCCAGGTCAATCTGAAAGAT-AAAAAAGC---AAAGGTAGATACAAATGTAGGAGGTGTCAGAAC---------------------------------------------------------------------------------------------------------AAACCTGCTAATAGGCAG------------------------------------------------------------GACT--------------ACAGCA-GGG-CCATTTCCCGCATGGGAAAC--CA-CTGCA-TTCCTATGG--TAGAAAATAATG--AATGCTCTTTTAATAAGAGG---
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     191955 301 -   1829203 CAGAAGGATTTTAAACCTAAGATTCCTTCTCTGTGTAGTTCCAAACTGTATGATGTGAAGATAATT----TACTTACCAAGATCTTTTTTTCCAATGGAGACTGCTGACCTGCAGCAATCCTAGGATCTTTAGATGATGTACCCCAGGCCAATCTGAAAGAT-AAAAAAGCAAAAAAGGTAGATTCAAATGTAGGAAGTGTCAGAAC---------------------------------------------------------------------------------------------------------AAACCTGCTAATAGGCAG------------------------------------------------------------GACT--------------ACAGCA-GGG-CCATTTCCCGCATGGGAAAC--CA-CTGCA-TTCCTATGG--TAGAAAATAATG--AATGCTCTTTTAATAAGAGG---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30362815 298 + 171630274 CAGAAGGATTTTAAACCTAAGATTCCTTCTCTGTGTAGTTCTAAACTGTACAATATAAAGACAGTT----TACTTACCAAGATCTTTTTCTCCAGTGGAGACTGCTGACCTGCAGCAATCCTAGGATCTTTAGATGAAGTAGCCCAGGCCAATCTGGAAGAT-AAAAAAAC---AAAGGTAAATTAAAATGTAGGAGGTGTCAGAAC---------------------------------------------------------------------------------------------------------AAAGTTGCTAATAGGCAG------------------------------------------------------------GACT--------------ACAGCA-GGG-CCATTGCCCCCATGGGAAAC--CA-GTGCA-TTCCTGTGG--TGGAAAATAATG--AATGCTCTTCTAAAAAGAGG---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           186201 298 +    515838 CAGAAGGA-TTTAAACCTAAGATTTCTTCTCTGTGTAGTTCTAAACTGTATGATATGAAGACAGTT----TACTTACCGAGATCATTTTCTCCAGTGGAGACTGCTGACCTGCAGCAATCCTAGGATCTTTAGAAGAAGTAGCCCAGTCCAATCTGGAAGTTAAAAAAAAC---AAAGGTAAATTAAAATGTAGGAGGTATCAGAAC---------------------------------------------------------------------------------------------------------AAAGCTGCTAATAGGCAG------------------------------------------------------------GACT--------------ATAGCA-GGG-TCATTTCCCCCATGGGAAAC--CA-GTGCA-TTCCTGTGG--TGGAAAATAATG--AATGCTCTTCTAATAAGAGG---
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     818711 300 -   1771730 CAGAAGGATTTTAAACCTAAGATTCCTCCTCTGTGTAGTTCTAAACTGTATGATATGAAGATAGTT----TACTTACCAAGATCATTTTCTCCAGTGGAGACTGCTGACCTGCAGCAATCCTAGGATCTTTAGATGAAGTAGCCCAGGCCAATCTGGAAGATAAAAAAAAC---AAAGGTAAATTAAAATGTAGGAGGTATCAGAAC---------------------------------------------------------------------------------------------------------AAAGCTACTAATAGGCAG------------------------------------------------------------GACT--------------AGAGCA-TTTCCCATTTCCCCCATGGGAAAC--CA-GTGCA-TTCCTGTGG--TGGAAAATAATG--AATGCTCTTCTAATAAGAGG---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     304726 298 -    383796 CAGAAGGATTTCAAACCTAAGATTCCTTCTCTGTGTAGTTCTAAACTGTATGATATGAAGATAGTT----TACTTACCAAGATCTTTTTCTCCAGTGGAGACTGCTGACCTGCAGCAATCCTAGGATCTTTAGATGAAGTAGCCCAGGCCAATCTGGAAGAT-AAAAAAAC---AAAAGTAAATTAAAATGTAGGAGGTGTCAGAAC---------------------------------------------------------------------------------------------------------AAAGCTGCTAATAGGCAG------------------------------------------------------------GACT--------------ACAGCT-GGG-CCATATCCCCCATGAGAAAC--CA-GTGCA-TTCCTGTGG--TGGAAAATAATG--AATGCTCTTCTAATAAGAGG---
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               283269 376 + 123392446 CAGAAGGATTTT-AATCTAAGATTCTTTCTCCCAGTAGTTCCAAACTGTATGATATGAAGATAAT-----TATTTACCAAGATCTTTTTCTCCAGTGGGGACTGCTGACCTGCAGCAATCCGAGGATCTTTAGATGATTTAGCCCAGGCCAATCTGTAAAAT-AAAACAGG---AAAGGTAAATTAGAATGTAGGAGGTATCAGAACACATCTCCTCACATACTGTCTGAGTAAAAG-----------------------AACACAATTGTTTTTGGCTAAGACCAAGGATATTTCCCTCACAAAG--AAAAAAGTCTGCTAATGGGCAG------------------------------------------------------------GACT--------------ACAGCA-GGG-CCATTTCGCTCATGGGAAAC--CA-CTGCG-TTACTATGG--TGGAGAATAATG--AATGTTCTTTTAATAAAAAG---
i micMur3.chr6             I 344 I 3
s proCoq1.NW_012149775v1      88243 376 -   1411461 TAGAAGGATTTT-AATCTAAGATTCGTTCTCCGAGTAGTCCCAAACTGTATGATATGAAGATAAT-----TATTTACCAAGATCTTTTTCTCCAGTGGGGACTGCTGACCTGCAGCAATCCGAGGATCTTTAGATGATTTAGCCCAGGCCAATCTGGAAGAT-AAAAAAAC---AAATGTAGATTAGAACATGGGAGGTGTCAGAACACATCTGCTCACATATTGTCTGAGTAAAGGAACACAATTGTTTTGGCTAAGAC------------------------CAAGGGTATTTCCCTTACAAAG-AAAAAAAATCTGCTAATGGGCAG------------------------------------------------------------GACT--------------ACAACA-GGA-CCATTTTCCTCACAGGAAAC--CA-CTGCA-TTCCTGTGG--TGGAGAATAATG--AATGTTCTTTTAATAAAAAG---
i proCoq1.NW_012149775v1   C 0 I 3
s otoGar3.GL873550           230880 364 +  18854210 ---CAGGATTTT-AACTTAAGATT-TTTATCTGTATAGTTCCAAAATGTATGATACAATATTTATCAAGATACTTACCAAAATCTTTTTTTCCAGTGGGGACTGTTGGCCTGCAGCAATCCTAGGATCTTTAGATGATTTAGCCCAGGCCAATCTGGAAGAT-AAAAAAGT---AAAGATAGAATAGAAATGTGGGAGTATCAGAACATATCTGCTCATATATTGTCTGAGTAAAGG-----------------------AACACAC-----------------CAAAGGTATTTCCCTCACAAAAAAAAAGAAATCTGCTAATAGACAG------------------------------------------------------------GACT--------------GCATAA-GGG-CCACTTCCCCCATGGGAAACAGCA-TTGCA-TTTCTATGG--TAGAAAATAATG--AATGTTCTTTTAATAAGAGG---
i otoGar3.GL873550         C 0 I 329
s mm10.chr17               58022782 287 -  94987271 CTGAAGGATTTTAAACCC-TGGTCCTTTTTCTAAGTAGCTCC--ACTGTA-------------GAT----TACTTACCAGGATCTTCTTCTCCAGTGGAGACTGCTGGCCTTCTGAAATCCTAGGGTCTCTGGATTCTTTTGCCCAAGCCAATCTAAAAGAT----AAAGC---AAAGGTAGATTGGAGTAGGGGAGACACCACATG---TTTGCTCACTTATCATTCCAGTC-------------------------------------------------------------------------------AGAGATCTCAATGATTTG------------------------------------------------------------GCCA--------------AGAACATGGG-CCATTTCTCCATCGGGGAAA--CATTTGCATTTCCCATGGCACAAAAAACAACG-------------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26283005 296 +  26524999 ---CAGGGTTTTAAACCCAAGGCTACTTCTCCTAGCAGTTCCCAAGTGCACAACATGAAGATGATT--------TACCAGGAGTTTTTTCTCCAGTGGGGACTGTTGGTCTACGGCAATCCTAGGGTCTGGTGATGCTTTAGCCCAGGCCAAACTGTAAGAT-AAGAGAGC---AGAGGTAGATTAGAGCGTGGGAGGCGTCAGGAC-----------------------------------------------------------------------------------------------------------ATCTTCCCACACACTG------------------------------------------------------------ACCTAACCAAACTGACTGACAAGA-AGT-CTGCCTCCTCCATGGGAAAG--CA-CCGCA-CTACCACGG--TGGAGAATCTGG--GACCAGCACGTAA----------
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             9106 362 -     22419 GGAAAGGATTTTAAAACTAACATTCCTTCTCCTAGTAGTTCTAAACTAAATGATGTGAAGGTAATT----TATTTACCAAGATCTTTTTCTCCAGTGGGGACTGTTGGCCTGCAGCAATCCTAGAGTCTTTAGATGCTTTAGCCCAGGCCAATCTATAAGAC-AAAAAGGC---AAAGGTAGATTAGAACAT-GGAGGCATCAGAAC---------------------------------------------------------------------------------------------------------ACATCTGCTCACATGGCGTTTGACTGGGTCAAGGCACCCGATGGTTTTGGCCAAGGCCCAACAGAAAAGCTGCAAGCAGGTT--------------ATAGCA-GGG-CATTTTCCCCCAAGGGAAAC--CA-CTGTA-TTCCTACGG--GAGAGAATAATGGAAATGGCCTTTTAATAAAGGGAGG
i dasNov3.JH569887         C 0 C 0

a score=3038437.000000
s hg38.chr6_GL000254v2_alt  1402432 192 +   4827813 ATCTTTCCTTTCATATGA---AC---AAGCATACTTTTCCTGTGGACTCAGCGTGAACCACTGTGAATCTCGTATTGGGGATTGTGAGTGGGAAGAGACA---TGCTCCTTGGTGAGGTGTTGTCCAAGTACATCTATGTCAGTCTGCTCAGTCCTCAAGCCTCCTTTGTGTTCTGAGACGATTGTAGGTTCTAGTTTTCT
s panTro5.chr6             30275875 192 + 175400573 ATCTTTCCTTTCATATGA---AC---AAGCATACTTTTCCTGTGGACTCAGCGTGAACCACTGTGAATCTTGTATTGGGGATTGTGAGTGGGAAGAGACA---TGCTCCTTGGTGAGGTGTTGTCCAAGTACATCTATGTCAGTCTGCTCAGTCCTCAAGCTTCCTTTGTGTTCTGAGACGATTGTAGGTTCTAGTTTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30506421 192 + 173848474 ATCTTTCCTTTCATATGA---AC---AAGCATACTTTTCCTGTGGACTCAGCGTGAACCACTGTGAATCTTGTATTGGGGATTGTGAGTGGGAAGAGACA---TGCTCCTTGGTGAGGTGTTGTCCAAGTACATCTGTGTCAGTCTGCTCAGTCCTCAAGCCTCCTTTGTGTTCTGAGACGATTGTAGGTTCTAGTTTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     212973 192 +   2037526 ATCTTTCCTTTCATATGA---AC---AAGCGTACTTTTCCTGTGGACTCAGCGTGAACCACTGTGAATCTCGTATTGGGGATTGTGAGTGGGAAGAGACA---TGCTCCTTGGTGAGGTGTTGTCCAAGTACATCTATGTCAGTCTGCTCAGTCCTGAAGCCTCCTTTGTGTTCTGAGACGATTGTAGGTTCTAGTTTTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74885945 192 + 122973662 ATCTTTCCTTTCATATGA---AC---AAGCATACTTTTCCTGTGGACCCAGTGTGAACCATTGTGAATCTCGTATTGGGGACTGTGAGTGGGAAGGGACA---CGCTCCTTGGTGAGGTGTTGTCCAAGTACATCTATGTCAGTCTGCTCAGTCCTCAAGCCTCCTCTGTGTTCTGAGACGATTCCAGGTTCTAGTTTTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30759691 192 + 172585720 ATCTTTCCTTTCATATGA---AC---AAGCATACTTTTCCTGTGGACTCAGCGTGAACCACTGTGAATCTCGTATTGGGGATTGTGAGTGGGAAGAGACA---TGCTCCTTGGTGAGGTGTTGTCCAAGTACATCTATGTCAGTCTGCTCAGTCCTCAAGCCTCCTCTGTGTTCTGAGACGATTCTAGGTTCTAGTTTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30054834 192 - 170955103 ATCTTTCCTTTCATATGA---AC---AAGCATACTTTTCCTGTGGACTCAGCGTGAACCACTGTGAATCTCGTATTGGGGATTGTGAGTGGGAAGAGACA---TGCTCCTTGGTGAGGTGTTGTCCAAGTACATCTATGTCAGTCTGCTCAGTCCTCAAGCCTCCTCTGTGTTCTGAGACGATTCTAGGTTCTAGTTTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     304120 192 +   1495729 ATCTTTCCTTTCATATGA---AC---AAGCATACTTTTCCTGTGGACTCAGCGTGAACCACTGTGAATCTCGTATTGGGGATTGTGAGTGGGAAGAGACA---TGCTCCTTGGTGAGGTGTTGTCCAAGTACATCTATGTCAGTCTGCTCAGTCCTCAAGCCTCCTCTGTGTTCTGAGACGATTCTAGGTTCTAGTTTTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     402168 192 -    863181 ATCTTTCCTTTTATATGA---AC---AAGCATACTTTTCCTGTGGACTCAGCATGAACCACTGTGAATCTCGTATTGGGGATTGTGAGTGGGAAGAGACA---TGCTCCTTGGTGAGGTGTTGTCCAAGTACATCTATGTCAGTCTGCTCAGTCCTCAAGCCTCCTCTGTGTTCTGAGACGATTCTAGGTTCTAGTTTTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29554208 192 -  71996105 ATCTTTCCTTTCATATGA---AC---AAGCATACTTTTCCTGTGGACTCAGCATGAACCACTGTGAATCTCGTATTGGGGATTGTGAATGGGAAGAGACA---TGCTCCTTGGTGAGGTGTTGTCCAAGTACATCTATGTCAGTCTGCTCAGTCCTCAAGCCTCCTCTGTGTTCTGAGACGATTCTAGGTTCTAGTTTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     236911 192 -    735854 ATCTTTCCTTTCATATGA---AC---AAGCATACTTTTCCTGTGGACTCAGCATGAACCACTGTGAATCTCGTATTGGGGATTGTGAGTGGGAAGAGACA---TGCTCCTTGGTGAGGTGTTGTCCAAGTACATCTATGTCAGTCTGCTCAGTCCTCAAGCCTCCTCTGTGTTCTGAGACGATTCTAGGTTCTAGTTTTCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     192256 192 -   1829203 ATCTTTTCTTTCATATGA---AC---AAGCATACTTTTCCTGTGGACTCAGCATGAACCACTGTGAATCTCGTATTGGGGATTGTGAGTGGGAAGAGACA---TGCTCCTTGGTGAGGTGTTGTCCAAGTACATCTATGTCAGTCTGCTCAGTCCTCAAGCCTCCTCTGTGTTCTGAGACAACTCTAGGTTCTAGTTTTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30363113 192 + 171630274 ATCTTTCCTTTCACATGA---AC---AAGGATACTTTTCCTGTGGACTCAGTGTGAACCACTGTGAATCTTGTATTGGGGATTGTGAGTGGGAAGAGACA---TGCTCCTTATTGAGGTGTTGTCCAAGTACATCTGTGTCAGACTGCTCAGTCCTCAAGCCTCCTCTGTGTTCTGAGATGATTCTAGGTCCTAGTTTTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           186499 192 +    515838 ATCTTTCCTTTCATATGA---AC---AAGGATACTTCTCCTGTGGACTCAGCGTGAACCACTGTGAATCCTGTATTGGGGATTGTGAGTGGGAAGAGACA---TGCTCCTTGGTGAGGTGTTGTCCAAGTATATCTGTGTCAGACTGCTCAGTCATCAAGCCTCCTCTGTGTTCTGAGATGATTCTAGGTGCTAGTTTTTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     819011 192 -   1771730 ATCTTTCCTTTCATATGA---AC---AAGGATACTTTTCCTGTGGACTCAGCGTGAACCACTGTGAATCTTGTATTAGGGATTGTGAATGAGAAGAGACA---CGCTCCTTGGTGAGGTGTTGTCCAAGTACATCTGTGTCAGACTGCTCAGTCCTCAAGCCTCCTCTGTGTTCTGAGATGATTCTAGGTCCTAGTTTTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     305024 190 -    383796 ATCTTCCCTTTCATATGA---AC---AAGGACACTTTTCCTGTGGACTCCGCATGAACAACCGTGAATCTTGTATTGGGGACTGTGAGTGGGAAGAGACA---TGCTCCTTGGTGAGGTGTTGTCCAAGTACATTTATGTCAGATTGCTCAGTCCTCAAGCCTC--CTGTGTTCTGAGATGATTCTAGGTCCTTGTTTTCT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               283648 195 + 123392446 ATCTCTCCTTTCATATGAACTAC---AAGCATACTTCTCCTGTGGACTCAGCATGAACCATTCTGAATCTTGTATCCAGGGTTGTGAGTAGGAAGAGACA---GGCTCTTTGGTGAGGTGTTGCCCGAGTACATTTATGTCAGATCTCTCAGTCCTTGAGTCTTCTCTGCCTTCTGAGATAATTCTCATCTTCCGTTTTAT
i micMur3.chr6             I 3 I 7
s proCoq1.NW_012149775v1      88622 195 -   1411461 ATCTTTCCTTTCATATGAACTAC---AAGCATACTTCTCCTGTGGACTCAGCATGAACCATTCTGAATCTTGTATCCAGGGTTGTGAATAGGAAGAGACA---GGCTCCTTGGTGAGGTGTTGCCTGAGTACATGTATGTTAGATCCCTCAGTCCTTGAGTCTCCTCTGTCTTTGGAGATAATTCTCATCTTCCGTTTTAT
i proCoq1.NW_012149775v1   I 3 I 7
s otoGar3.GL873550           231573 195 +  18854210 ATCTTTCCTCTCTTATGAATTAC---AAGCATACTTGTCTTGTGGACTCAGCATGAACCATTCTGAATCTTCTATCCAGGACTGTGAGTTGGAAGGGATA---GGCTCCTTGGTGAGGTGTTGCCTAAGTACATGTCGGTCAGATCCCTCAGTCCTTGACCTTTCTTTGTCTTCTGAGATAATTTTTATGTCTTGTTTTGT
i otoGar3.GL873550         I 329 C 0
s mm10.chr17               58023069 191 -  94987271 AGCATTTCTTATATATGA---ACTAAAAGCATACCTCTCCTGTGGACTCAAGGCAAACCACTCAGAATCATTTATTTGGCATGGACAGAAGACAGAAATA---GGCTCTTTGGTGAGGGATGGCCTAAGGACACCCAGACCAGATTGTTCAGTTTCAAAGCCTTTTTTGTCTTCTGAGATAATTCTAGTCTCTCGTT----
i mm10.chr17               C 0 C 0
s canFam3.chr35            26283301 170 +  26524999 -----ACCCTTCACAGAAAGTAG---AAGCGCACATCTCCCGAGGACTCAATGTGAACCAGTCTGAGTCCCGAGTCTGGGGCCG------GGAAGACATAGGCGGCTCCTTGCTACTGTGCTGCCCCAGCACCTCTCCATCAGACCGCTCTGCCTCCCAGGCTC---TGTCTTCGGAGA--------------GGTTTCCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             9468 195 -     22419 GTCTTTCCTTTTACATGA---ACTAAAAGCGTACTTCTCTTGTGGACTCAGCTTAAACCATTCTGCATCATTTATCGAAGATTGGGAGAGGGAAGAGTCG---CACTCCTTGATGAGGCATTGCTCAGGCACATCTATGTCAGACTGCTCTGTCCCCCCACCTCCTTCATCTTCTGAGGTTATTCTGGGCTCCAGTTTTAT
i dasNov3.JH569887         C 0 C 0

a score=210717.000000
s hg38.chr6_GL000254v2_alt  1402624 21 +   4827813 AGACGATTCTAGGTTTC-TAGT
s panTro5.chr6             30276067 21 + 175400573 AGACGATTCTAGGTTTC-TAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30506613 21 + 173848474 AGACGATTCTAGGTTTC-TAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     213165 21 +   2037526 AGATGATTCTAGGTTTC-TAGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74886137 21 + 122973662 AGATGATTCTAGGTTTC-TAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30759883 21 + 172585720 AGATGATTCTAGGTTTC-TAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30055026 21 - 170955103 AGATGATTCTAGGTTTC-TAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     304312 21 +   1495729 AGATGATTCTAGGTTTC-TAGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     402360 21 -    863181 AGATGATTCTAGGTTTC-TAGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29554400 21 -  71996105 AGATGATTCTAGGTTTC-TAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     237103 21 -    735854 AGATGATTCTAGGTTTC-TAGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     192448 21 -   1829203 AGATGATTCTAGGTTTC-TAGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30363305 21 + 171630274 AGATGATTCTAGGTTTC-TAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           186691 21 +    515838 AGATGATTCTAGGTTTC-TAGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     819203 21 -   1771730 AGAGGATTCTAGGTTTC-TAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     305214 21 -    383796 AGATGATTCTAGGTTTC-TAGT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           231768  7 +  18854210 ---GGATTCG------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58023260  8 -  94987271 -------------TGTC-CAGC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26283471 18 +  26524999 ----GACTCCAGGGTTCGCAGT
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             9663  4 -     22419 ------------------CAGT
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               283843  7 + 123392446 I
e proCoq1.NW_012149775v1      88817  7 -   1411461 I

a score=13365.000000
s hg38.chr6_GL000254v2_alt  1402645 1 +   4827813 T
s panTro5.chr6             30276088 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30506634 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     213186 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74886158 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30759904 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30055047 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     304333 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     402381 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29554421 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     237124 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     192469 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30363326 1 + 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           186712 1 +    515838 T
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     819224 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     305235 1 -    383796 T
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58023268 1 -  94987271 T
i mm10.chr17               C 0 I 2
s canFam3.chr35            26283489 1 +  26524999 C
i canFam3.chr35            C 0 I 2
s dasNov3.JH569887             9667 1 -     22419 T
i dasNov3.JH569887         C 0 I 2
e micMur3.chr6               283843 7 + 123392446 I
e proCoq1.NW_012149775v1      88817 7 -   1411461 I
e otoGar3.GL873550           231775 0 +  18854210 C

a score=1462035.000000
s hg38.chr6_GL000254v2_alt  1402646 81 +   4827813 TTCTCTTCCTGCAGTTTCTTGATCCGGGCCCTCTCTGACTCTATCAGCACATACAGCATTTCTGCCCTCTAATCTTTTGTT
s panTro5.chr6             30276089 81 + 175400573 TTCTCTTCCTGCAGTTTCTTGATCCGGGCCCTCTCTGACTCTATCAGCACATACAGCATTTCTGCCCTCTAATCTTTTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30506635 81 + 173848474 TTCTCTTCCTGCAGTTTCTTGATCCGGGCCCTCTCTGACTCTATCAGCACATACAGCATTTCTGCCCTCTAATCTTTTGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     213187 81 +   2037526 TTCTCTTCCTGCAGTTTCTTGATCCGGGCCCTCTCTGACTCTATCAGCACATACAGCATTTCTGCCCTCTAATCTTTTGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74886159 81 + 122973662 TTCTCTTCCTGCAGTTTCTTGATCCGGGCCCTCTCTGACTCTATCAGCACATATAGCATTTCTGCCCTGTAATCTTTCGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30759905 81 + 172585720 TTCTCTTCCTGCAGTTTCTTGATCCGGGCCCTCTCTGCCTCTATCAGCACATACAGCATTTCTGCCCTCTAATCTTTTGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30055048 81 - 170955103 TTCTCTTCCTGCAGTTTCTTGATCCGGGCCCTCTCTGCCTCTATCAGCACATACAGCATTTCTGCCCTCTAATCTTTTGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     304334 81 +   1495729 TTCTCTTCCTGCAGTTTCTTGATCCGGGCCCTCTCTGCCTCTATCAGCACATACAGCATTTCTGCCCTCTAATCTTTTGTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     402382 81 -    863181 TTCTCTTCCTGCAGTTTCTTGATCCGGGCCCTCTCTGCCTCTATCAGCACATACAGCATTTCTGCTCTCTAATCTTTTGTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29554422 81 -  71996105 TTCTCTTCCTGCAGTTGCTTGATCCGGGCCCTCTCTGCCTCTATCAGCACATACAGCATTTCTGCCCTCTAATCTTTTGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     237125 81 -    735854 TTCTCTTCCTGCAGTTTCTTGATCCGGGCCCTCTCTGCCTCTATCAGCACATACAGCATTTCTGCCCTCTAATCTTTTGTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     192470 81 -   1829203 TTCTCTTCCTGCAGTTTCCTGATCCGGGCCCTCTCTGCCTCTATCAGCACATACAGCATTTCTGCCCTCTAATCTTTTGTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30363327 81 + 171630274 TTCTCTTTCTGTAGTTTCTTGATCCAAGCCCTCTCTGCCTCTATCAGCACATACAGCGTTTCTGCCCTCTAATCTTTTGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           186713 81 +    515838 TTCTCTTTCTGTAGTTTCATGATCTGAGCCCTCTCTGCCTCTATCAGCAAGTACAGCATTTCTGCTCTCCAATCTTTTGTT
i saiBol1.JH378341         C 0 I 314
s cebCap1.NW_016107755v1     819225 81 -   1771730 TTCTCTTTCTGTAGTTTCTTGATCTGAGCCCTCTCTGCCTATATCAGCACATGCAGCATTTCTGCCCTCTAATCTTTTGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     305236 81 -    383796 TTCTCTTTCTGTAGTTTCTTGATCCAAGCCCTCTCTGCCTCTATCAGCACATACAGTATTTCTGCCCTCTAATCTTTTGTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               283850 81 + 123392446 TCCTCTTTCTGCAGTTGCTTGATCCGAGCCCTCTCTGCCTCTATTAGGACATACAGCATCTCTGCCTTCTAATCTTTTCTT
i micMur3.chr6             I 7 C 0
s proCoq1.NW_012149775v1      88824 81 -   1411461 TCCTCTTTCTGCAGTTGCTTGATCCGAGCCCTCTCTGCCTCTATCAGCACATACAGCATCTCTGCCTTCTAATCTTTTGTT
i proCoq1.NW_012149775v1   I 7 C 0
s otoGar3.GL873550           231775 81 +  18854210 TTCTCTTTCTCCAGTTTCTTGATCCGGGCCCTCTCTGCCTCTATCAGCACATAAAGCATGCCTACCGTCTAATCTTCTGTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58023271 76 -  94987271 TTGTCTTTCTGCACTTTGTCCAGCCAGGCCCTCTGTGCTTCTATCAGCACATACAGCATCTTTGCCTTGC-----TTTGTA
i mm10.chr17               I 2 C 0
s canFam3.chr35            26283492 81 +  26524999 TCCTCCTTCTGTAGTTTCTGGGTCCGGACCCTCTCTGCCTCTATCAGCACATATAGCATCTCTGCCTTCCAGCCTTCCGTT
i canFam3.chr35            I 2 C 0
s dasNov3.JH569887             9670 81 -     22419 TTCTCCTTCTGGAGTCTCTTGATCCGGGCCCTTTCTGCCTCTATCAGCACATAAAACATCTCTGTGCTTTAAACTTTTGCT
i dasNov3.JH569887         I 2 C 0

a score=160898.000000
s hg38.chr6_GL000254v2_alt  1402727 8 +   4827813 CTGAAATT
s panTro5.chr6             30276170 8 + 175400573 CTGAAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30506716 8 + 173848474 CTGAAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     213268 8 +   2037526 CTGAAATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74886240 8 + 122973662 CTGAAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30759986 8 + 172585720 CTGAAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30055129 8 - 170955103 CTGAAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     304415 8 +   1495729 CTGAAATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     402463 8 -    863181 CTGAAATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29554503 8 -  71996105 CTGAAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     237206 8 -    735854 CTGAAATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     192551 8 -   1829203 CTGAAATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30363408 8 + 171630274 CTGAAATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           187108 8 +    515838 cTGAAATT
i saiBol1.JH378341         I 314 C 0
s cebCap1.NW_016107755v1     819306 8 -   1771730 CTGAAATT
i cebCap1.NW_016107755v1   C 0 I 310
s aotNan1.NW_018496904v1     305317 8 -    383796 CTGAAATT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               283931 8 + 123392446 TTGAAATT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      88905 8 -   1411461 ATGAAATT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           231856 8 +  18854210 CTGAAATT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58023347 8 -  94987271 CTGAAATT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26283573 8 +  26524999 CTGAAATT
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             9751 8 -     22419 CTGAAAGT
i dasNov3.JH569887         C 0 C 0

a score=7973.000000
s hg38.chr6_GL000254v2_alt  1402735 1 +   4827813 C
s panTro5.chr6             30276178 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30506724 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     213276 1 +   2037526 C
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74886248 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30759994 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30055137 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     304423 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     402471 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29554511 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     237214 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     192559 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30363416 1 + 171630274 C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           187116 1 +    515838 C
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     305325 1 -    383796 C
i aotNan1.NW_018496904v1   C 0 I 330
s micMur3.chr6               283939 1 + 123392446 C
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      88913 1 -   1411461 C
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           231864 1 +  18854210 C
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58023355 1 -  94987271 C
i mm10.chr17               C 0 C 0
s canFam3.chr35            26283581 1 +  26524999 C
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             9759 1 -     22419 C
i dasNov3.JH569887         C 0 C 0
e cebCap1.NW_016107755v1     819314 310 -   1771730 I

a score=14159.000000
s hg38.chr6_GL000254v2_alt  1402736 4 +   4827813 TG---TT
s panTro5.chr6             30276179 7 + 175400573 TGTTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30506725 7 + 173848474 TGTTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     213277 7 +   2037526 TGTTCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74886249 7 + 122973662 TGTTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30759995 4 + 172585720 TT---TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30055138 4 - 170955103 TT---TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     304424 4 +   1495729 TT---TT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     402472 4 -    863181 TT---TT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29554512 4 -  71996105 TT---TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     237215 4 -    735854 TT---TT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     192560 4 -   1829203 TT---TT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30363417 4 + 171630274 TG---Ct
i calJac3.chr4             C 0 I 971
s saiBol1.JH378341           187117 4 +    515838 TG---TT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     819624 4 -   1771730 TG---TT
i cebCap1.NW_016107755v1   I 310 C 0
s aotNan1.NW_018496904v1     305656 4 -    383796 TG---TT
i aotNan1.NW_018496904v1   I 330 C 0
s micMur3.chr6               283940 4 + 123392446 TG---TT
i micMur3.chr6             C 0 I 3
s proCoq1.NW_012149775v1      88914 4 -   1411461 TG---TT
i proCoq1.NW_012149775v1   C 0 I 3
s otoGar3.GL873550           231865 4 +  18854210 TG---TT
i otoGar3.GL873550         C 0 I 3
s mm10.chr17               58023356 4 -  94987271 TA---TT
i mm10.chr17               C 0 I 3
s canFam3.chr35            26283582 4 +  26524999 ---TCTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             9760 4 -     22419 CG---TT
i dasNov3.JH569887         C 0 C 0

a score=6024922.000000
s hg38.chr6_GL000254v2_alt  1402740 380 +   4827813 ATTTGACTGCTCAGCC---CTCTGCTTGCCTGACTAACAATGCCAATCATCCTTCACTCTAAATCCATTATGAGACTATTCCCTGTTGAACCCCTCAGGATGGCA---ATTTGTGGTTACTCTGGGTTTATTTATAGAGGAGGCTGATGGCAACACAAATGAAAACTATCATCTT-TT-ATGTGTCATCCCTGGTCTAGCCTGAGTTTACTGTGATGTCGTATTT--AAGCCACTGAGGATGCC-TGGCATTTCCTCTGTATGTCTTTTATACCATTTAGAGTTCaaaggatggtctttacagtctgacagagctagatctgaaatctaattctaccacttcctaggtgtgtgactcagggcaag-----taac-ttc------tgtcagctttctcatctat
s panTro5.chr6             30276186 380 + 175400573 ATTTGACTGCTCAGCC---CTCTGCTTGCCTGACTAACAATGCCAATCATCCTTCACTCTAAATCCATTATGAGACTATTCCCTGTTGAACCCCTCAGGATGGCA---ATTTGTGGTTACTCTGGGTTTATTTATAGAGGAGGCTGATGGCAACACAAATGAAAACTATCAACTT-TT-ATGTGTCATCCCTGGTCTAGCCTGAGTTTACTGTGATGTCGTATTT--AAGCCACTGAGGATGCC-TGGCATTTCCTCTGTATGCCTTTTATACCATTTACAGTTCaaaggatggtctttacagtctgacagagctagatctgaaatctaattctaccacttcctaggtgtgtgactcagggcaag-----taac-ttc------tgtcagctttctcatctat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30506732 380 + 173848474 ATTTGACTGCTCAGCC---CTCTGCTTGCCTGACTAACAATGCCAATCATCCTTCACTCTAAATCCATTATGAGACTATTCCCTGTTGAACCCCTCAGGATGGCA---ATTTGTGGTTACTCTGGGTTTATTTATAGAGGAGGCTGATGGCAACACAAATGAAAACTATCAACTT-TT-ATGTGTCATCCCTGGTCTAGCCTGAGTTTACTGTGATGTCGTATTT--AAGCCACTGAGGATGCC-TGGCATTTCCTCTGTATGCCTTTTATACCATTtacagttcaaaggatggtctttacagtctgacagagctagatctgaaatctaattctaccacttcctaggtgtgtgactcagggcaag-----taac-ttc------tgtcagctttctcatctat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     213284 380 +   2037526 ATTTGACTGCTCAGCC---CTCTGCTTGCCTGCCTAACAATGCCAATCATCCTTCACTCTAAATCCATTATGAGACTATTCCCTGTTGAACCCCTCAGGATGGCA---ATTTGTGGTTACTCTGGGTTTATTTATAGAGGAGGGTGATGGCAACACAAATGAAAACTATCAACTT-TT-ATGTGTCATCCCTGGTCTAGCCTGAGTTTACTGTGAGGTCGTATTT--AAGCCACTGAGGATGCC-TGGCATTTCCTCTGTATGCCTTTTATACCATTtacagttcaaaggatggtctttacagtctgacagggctagatctgaaatctaattctaccacttcctaggtgtgtgactcagggcaag-----taac-ttc------tgtcagctttttcatctat
i gorGor5.CYUI01015528v1   C 0 I 316
s nomLeu3.chr1a            74886256 380 + 122973662 ATTTGACTGCTCAGCC---CTCTGCTTGCCTGCCTACCAATGCCAATCATCCTTCACTCTAAATCCATTATGAGACTATTCCCTGTTGAACCCCTCAGGATGGGA---ATTTGTGGTCACTCTGGGTTTATTTATAGAGGCGGCTGATGGCAACACAAATGAAAACTATCAACTT-TT-ATGTGTCATCCCTGGTCTAGCCTGAGTTTACTGTGAGGTCGTATTT--AAGCCACTGAGGATGCC-TGACATTTCCTCTGTATGCCTTTTATACCATTtacagttcaaaggatggtctttacagtctgacagggctagatctgaaatctaattccaccacttcctaggtgtgtgactcagggcaag-----taac-ttc------tgtcagctttctcctctat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30759999 380 + 172585720 ATTTGATTGCTCAGCC---CTCTGCTTGCCTGCCTTACAATGCCAATCATCCTTCACTCTAAATCTATTATGAGACTATTCCCTGTTGAACCCCTCAGGATGGGA---ATTTGTGATTACTCTGGGTTTATTTATAGAGGAGGCTGATGGCAACACAAACGAAAACTATCAACCT-TT-ATGTGTCATCCCTGGTCTAGCCTGAGTTTACTGTGAGGTCGTATTT--AAGCCCCTGAGGATGTC-TGGCGTTTCCTCTCTATGCCTTTTATACCATTTACAGTTCaaaggatgggctttacagtctgacatggctagatctgaatcctaattccaccacttcctaggtgtgtgactcagggcaag-----taac-ttc------tgtcagctttctcatctat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30055142 380 - 170955103 ATTTGATTGCTCAGCC---CTCTGCTTGCCTGCCTTACAATGCCAATCATCCTTCACTCTAAATCTATTATGAGACTATTCCCTGTTGAACCCCTCAGGATGGGA---ATTTGTGATTACTCTGGGTTTATTTATAGAGGAGGCTGATGGCAACACAAACGAAAACTATCAACCT-TT-ATGTGTCATCCCTGGTCTAGCCTGAGTTTACTGTGAGGTCGTATTT--AAGCCCCTGAGGATGTC-TGGCGTTTCCTCTCTATGCCTTTTATACCATTtacagttcaaaggatgggctttacagtctgacatggctagatctgaatcctaattccaccacttcctaggtgtgtgactcagggcaag-----taac-ttc------tgtcagctttctcatctat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     304428 380 +   1495729 ATTTGATTGCTCAGCC---CTCTGCTTGCCTGCCTTACAATGCCAATCATCCTTCACTCTAAATCTATTATGAGACTATTCCCTGTTGAACCCCTCAGGATGGGA---ATTTGTGATTACTCTGGGTTTATTTATAGAGGAGGCTGATGGCAACACAAACGAAAACTATCAACCT-TT-ATGTGTCATCCCTGGTCTAGCCTGAGTTTACTGTGAGGTCGTATTT--AAGCCCCTGAGGATGTC-TGGCGTTTCCTCTCTATGCCTTTTATACCATTTACAGTTCaaaggatgggctttacagtctgacatggctagatctgaatcctaattccaccacttcctaggtatgtgactcagggcaag-----taac-ttc------tgtcagctttctcatctat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     402476 380 -    863181 ATTTGATTGCTCAGCC---CTCTGCTTGCCTGCCTTACAATGCCAACCATCCTTCACTCTAAATCTATTATGAGACTATTCCCTGTTGAACCCCTCAGGATGGGA---ATTTGTGATTACTCTGGGTTTATTTATAGAGGAGGCTGATGGCAACACAAACGAAAACTATCAACCT-TT-ATGTGTCATCCCTGGTCTAGCCTGAGTTTACTGTGAGGTCGTATTT--AAGCCCCTGAGGATGTC-TGGCGTTTCCTCTCTATGCCTTTTATACCATTTACAGTTCaaaggatgggctttacagtctgacacggctagatctgaatcctaattccaccacttcctaggtgtgtgactcacggcaag-----taac-ttc------tgtcagctttctcatctat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29554516 380 -  71996105 ATTTGATTGCTCAGCC---CTCTGCTTGCCTGCCTTACAATGCCAATCATCCTTCACTCTAAATCTGTTACGAGACTATTCCCTGTTGAAGCCCTCAGGATGGGA---ATTTGTGATTACTCTGGGTTTATTTATAGAGGAGGCTGATGGCAACACAAACGAAAACTACCAACCT-TT-ATGTGTCATCCCTGGTCTAGCCTGAGTTTACTGTGAGGTCGTATTT--AAGCCCCTGAGGATGTC-TGGCATTTCCTCTCTATGCCTTTTATACCATTtacagttcaaaggatgggctttacagtctgacagggctagatctgaatcctaattccaccacttcctaggtgtgtgactcagggcaag-----taac-ttc------tgtcagctttctcatctat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     237219 380 -    735854 ATTTGATTGCTCAGCC---CTCTGCTTGCCTGCCTTACAATGCCAATCATCCTTCACTCTAAATCTATTATGAGACTATTCCCTGTTGAACCCCTCAGGATGGGA---ATTTGTGATTACTCTGGGTTTATTTATAGAGGAGGCTGATGGCAACACAAACGAAAACTATCAACCT-TT-ATGTGTCATCCCTGGTCTAGCCTGAGTTTACTGTGAGGTCGTATTT--AAGCCCCTGAGGATGTC-TGGCATTTCCTCTCTATGCCTTTTATACCATTtacagttcaaaggatgggctttacagtctgacacggctagatctgaatcctaattccaccacttcctaggtgtgtgactcagggcaag-----taac-ttc------tgtcagctttctcatctat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     192564 381 -   1829203 ATTTGATTGCTCAGCC---CTCTGCTTGCCTGCCTTACAATGCCAATCATCCTTCACTCTAAATCCATTATGAGACTATTCCCTGTTGAACCCCTCAGGATGGGA---ATTTGTGATCACTCTGGGTTTATTTATAGAGGAGGCTGATGGCAACACAAACGAAAACTATCAACCT-TT-ATGTGTCATCCCTGGTCTAGCCTGAGTTTACTGTGAGGTCGTATTT--AAGCCCCTGAGGATGTCTTGGCATTTCCTCTCTATGCCTTTTATACCATTTACAGTTCaaaggatgggctttacagtctgacagggctagatctgaatcctaattccaccacttcctaggtgtgtgactcagggcaag-----taac-ttc------tgtcagctttctcatctat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30364392 370 + 171630274 ATTTGATTGCCCAGCC---CTCTGCTTGCCTGCCTTCCAACGCCAATCATCCTTTACCCTAAATCCATCATGAAACTGTTCCCTGTTAGACTCCTCAGGATGGGA---ATTTGT----------GGTTTATTTGTAGAGAAGGCTGGTAGCAACACAAATGAAAACTATCAACTT-TT-ATGTGTCATCCCTGGTCAAACCTGAGCTTACTGTGAGGTCATATTT--AAGTCACTGAGGATGCC-TGGCATTTCCTCTCTGTGCCTTTTATACCATTTACAGCTCaaaggatgggctttagagtctgacagggctagatctgaatcctaattccaccacttcctaggtgtgaaactcagggcacg-----taaa-ttc------tgtcagttttctcatctat
i calJac3.chr4             I 971 C 0
s saiBol1.JH378341           187121 380 +    515838 ATTTAATTGCTCGGCC---CTCTGCTTGCCTGCCTTCCAATGCCAATCATCCTTTACCCTAAATCCATCATAAAACTGTTCCCTGTTGGACTCCTCAGGATGGGA---ATCTGTGGTTACTCTGGGTTTATTTGTAGAGGAGGCTGATAGCAACACAAATGAAAACTATCAACTT-TT-ATGTGTCATCCCTGGTCTAACCTGAGCTTACTGTGAGGTCATATTT--AAGTCACTGAGGATGTC-TGACATTTCCTCCCTGTGCCTTTTATACCATTtacagttcaaaggatgggctttagagtctgacagggctagatctgaaccctaattccaccacttcctaggtgtgggactcggggtaag-----taaa-ttc------tgtcagctttctcatctat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     819628 380 -   1771730 ATTTAATTGCCCGGCC---CTCTGCTTGCCTGCCTTCCAATGCCAATCATCCTTTACCCTAAATCCATCATAAAACTGTTCCCTGTTGGACTCCTCAGGATGGGA---ATTTGTGGTTACTCTGGGTTTATTTGTAGAGGAGGCTGATAGCAACACAAATGAAAACTATCAACTT-TT-ATGTGTCATCCCTGGTCTAACCTGAGCGTACTGTGAGGTCATATTT--AAGTCACTAAGGATGTC-TGGCATTTCCTCTCTGTGCCTTTTATACCATTtacagttcaaaggatgggctttagagtctgacagggctagatctgaatcctaattccaccacttcctaggtgtgggactcagggcaag-----taaa-ttc------tgtcagctttctcatctat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     305660 379 -    383796 ATTTAATTGCCCAGCC---CTCTGCTTGCCTGCCTTCCAATGCCAATCATCCTTTACCCTAAATCCATCATGAAACTGTTCCCTGTTGGACTCCTCAGGATGGGA---ATTTGTGGTTACTCTGGGTTTATTTGTAG---AGGCTGATAGCAACACAAATGAAAACTATCAACTT-TT-ATGTGTCATCCCTGGTCTAACCTGAGCTTACTGTGAGGTCATATTTAAAAGTCACTGAGGATGTC-TGGCATTTCCTCTCTGTGCCTTTTATACCATTTACAGTTCaaaggatgggctttagagtctgacagggctagatgtgaatcctaattccaccacctcctaggtgtgggactcagggcaag-----taaa-ttc------tgtcagctttctcatctat
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               283947 391 + 123392446 ATTTGATTGCCCAACT---CTCTGCTCGCCTGCCTTCTACTGCCAACCATCCTTCACCCTAAATACATTATGAGATTATTTCCTGCTGAACCCTTCAGGATGGGA---ACTTTTAGTTACTCTGGGTTTATTTATAGGGCAGGCTGATGGCAACACAAATGAAGACTACCAACTT-TT-ATGTGTCGTCTCTGGTCTAATCTGAGTTTACTGTGAGGTCGTATTT--AAGCCACTGAGCATGCC-TGGCATTTCATCTCTGTGCCTTTTATAACATTTATGGTTagaaacatgggcattggaacctgccagaaccagatttgaatcctaattctgccactttctaggtgtgtgactcagggcaagtaacttaac-ttctccttatgtcagtttcctcacctat
i micMur3.chr6             I 3 C 0
s proCoq1.NW_012149775v1      88921 382 -   1411461 ATTTGATTGCCCAACC---CTCTGCTCACCTGCCTTATACTGCCAACCATCCTTCACCCTAAACACATCAGGAGACTATTCCCTGCTGAACCCTTCAGGATGGGA---ATTTTTAGTTACTCTGGGTTTATTTATAGGGCAGGCTGATGGCAACACA----AAGACTACCAACTT-TT-ATGTGTCGTCTCTGGTCTAATCTGAGTTTACTATGAGGTCATATTT--AAGCCACTGAGCATGCC-TGGCATTTCATCTCTGAGCCTTTTATACCATTTATGGTTaaaaacatggtcattggagcctgccaaagctagatttgaatcctaattctaccactttctaggtgtgtgactcagggcaaa-----taac-ttctccctatgtcagtttcctcatctat
i proCoq1.NW_012149775v1   I 3 C 0
s otoGar3.GL873550           231872 391 +  18854210 ATTTGATTGCCCAACC---CTCTGCCTACCTGGTATATACTACCAATCATCCTTCACCGTAAATCCATTATGAGACTAACCCCTGCTGAACCCTTCAGGATGGGA---ATTTTTAGTTACACTGGGTCTATGTGTAGGGCAGGCTGATGGCAAAACAAATGAAGATTACCAACTT-TT-ATGTGTTGTCTCTGATCTACTCTGAGTTTACTGTGAGGTCGTATTT--AAGCCACTGAGCATGCC-TGGCATTTCATCTCTGTGCCTTTtataccatttatggttaaaagcatgggaattggagcccaacagagctagatttgaatcctaattttaccactttctaggtgtgtgactcagggcaagtaacttaac-tcctccctatgtcagtttcatcatctat
i otoGar3.GL873550         I 3 C 0
s mm10.chr17               58023363 378 -  94987271 CTTTGATCATCTGGCC---CTCGGCTTGACTGACTGATACTGTTAATCATCCTTCACCCTGAATCCATTTTGAGACTATTCCCTGCTGAAACTCTGCAGGCAGAG---GTTTGTGGCC-CTCTGGGTTTGTTTGC----CAGGCTGATGGCACCACAAGTGAAGATCACCAAGTTGTT-ATGAGTCATTCCTGCTCAAAGCTCAGTTTACTGTGAGGTCGCATTT--AAGCCACTGAAGCTGTC-CAGCACACAGGTTGGGAACCCT-----CAAATTATAGTCaaaagcaaagcctttgaggactggcaggaataaaattgaaccataattctactatttcttcaatgtatggtgcaggaaaagccagctacc-ttc----catgtcagtttacttatttaa
i mm10.chr17               I 3 I 1
s canFam3.chr35            26283586 374 +  26524999 -CTTATCTGGTCACCCTGACTCTGTGTCCCTGCCTTACACTGCCAGTCATCCTTCATCCCAAATCCAT---GAGACCATTCCC-ATTGAGTCCCCTGGCTTGGCACTGGTTAGTGGTCCCTC----TTCTCTTGTGGGTCAGGCTGACGGCAACACAAGTGAAGACTGCCAGCCT-TTCATATGTCATCCCTAGTGTACTGTGAGTTTACCGTGAGGTCGTGTTG--AAGCCCCTGGGGATGCC-TGGCATTTCATCTCTGTGCCCTTCAGGCTCTTTAtgg-caagagcgtgggctttgaagcctgacagggct--gtctgaacgctaatcacaccacctctgaggtgt--ggctctgggtaag-----taacaatg------ggtcagtctcctggtctat
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887             9764 363 -     22419 ATTTTATTGCCCACAC---CTCCACTTGGCTGCCTTACA---CCAATTGTCTTTCACCCT-AATCCATTATGGGACCGTTTACAATTCAGTCCTTCAGGATGGGA---ATTTGCAGGCA--CTGTGTTTATTTATAGGATAGCCTGCCAGCAACACAAGTGAAGACTACCAACAT-TTCATGTGTCATC-CTGGTCTGATCCGAGTTAACTGTGAGGTCGTACTG--AAGCCACTGAGGACAGC-TGGCATTTCACCTCTGTGCCTCT--------------------GCATgg-ttttgaagccccacagggctaggtctgactcttaattctaccacttcct-gatgtgtaaccaagaggaagtaatttaac-ctctctgtgtgtcggattcctcacctgt
i dasNov3.JH569887         C 0 C 0

a score=253391.000000
s hg38.chr6_GL000254v2_alt  1403120 15 +   4827813 aaaatggagatgtaa
s panTro5.chr6             30276566 15 + 175400573 aaaatggagatgtaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30507112 15 + 173848474 aaaatggagatgtaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     213980 15 +   2037526 aaaatggagatgtaa
i gorGor5.CYUI01015528v1   I 316 C 0
s nomLeu3.chr1a            74886636 15 + 122973662 aaaatggagatgtaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30760379 15 + 172585720 aaaatggagatgtaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30055522 15 - 170955103 aaaatggagatgtaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     304808 15 +   1495729 aaaatggagatgtaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     402856 15 -    863181 aaaatggagatgtaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29554896 15 -  71996105 aaaatggagatgtaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     237599 15 -    735854 aaaatggagatGTAA
i manLeu1.NW_012107142v1   C 0 M 50
s colAng1.NW_012115577v1     192945 15 -   1829203 aaaatggagatgtaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30364762 15 + 171630274 aaaatggagacgtaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           187501 15 +    515838 aaaacggagatgtaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     820008 15 -   1771730 aaaatggatatgtaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     306039 15 -    383796 aaaatggagatgtaa
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               284338 15 + 123392446 aaaatggagatataa
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      89303 15 -   1411461 aaaatggagatataa
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           232263 15 +  18854210 aaaatagagatacaa
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58023742 14 -  94987271 taaaggcagatata-
i mm10.chr17               I 1 C 0
s canFam3.chr35            26283960 15 +  26524999 aagatggatgtggga
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            10127 15 -     22419 aaaatggagatagaa
i dasNov3.JH569887         C 0 C 0

a score=840782.000000
s hg38.chr6_GL000254v2_alt  1403135 57 +   4827813 gacaaaaatctgcctctcagggttataaagaacaaatatg-aattagatgtaaagagc
s panTro5.chr6             30276581 57 + 175400573 gacaaaaatctgcctctcagggttataaagaacaaatatg-aattagatgtaaacagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30507127 57 + 173848474 gacaaaaatctgcctctcagggttataaagaacaaatatg-aattagatgtaaacagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     213995 57 +   2037526 gacaaaaatctgcctctcagggttataaagaacaaatatg-aattagatgtaaagagc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74886651 57 + 122973662 gacaaaaatctgcctctgagggttataaagaacaaatatg-aattagacgtaaagagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30760394 57 + 172585720 cacaaaaatctgcctctcagggttataaagaacaaatacg-aattagatgtaaagaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30055537 57 - 170955103 cacaaaaatctgcctctcagggttataaagaacaaatacg-aattagatgtaaagaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     304823 57 +   1495729 gacaaaaatctgcctctcagggttataaagaacaaatatg-aattagatgtaaagaac
i macNem1.NW_012012100v1   C 0 I 133
s cerAty1.NW_012002535v1     402871 57 -    863181 gacacaaatctgcctctcagggttataaagaacaaatatg-aattagatgtaaagaac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29554911 57 -  71996105 cacaaaaatctgcctctcagggttataaagaacaaatatg-aattagatgtaaagagt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     192960 57 -   1829203 gacaaaaacctgcctctcagggttataaagaacaaatatg-aattagatgtaaagagc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30364777 57 + 171630274 gacaaaaatctgcctctcagtgttataaagaacaattatg-aattcaaggtaaagagc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           187516 56 +    515838 gacaaaaatct-cctgtcagggttataaagaacaaatatg-aattcaatgtaaagagc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     820023 57 -   1771730 gacaaaaatctgcctctcagggttataaagaacaaatatg-aattcaatgtaaagagc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     306054 57 -    383796 gacaaaaatctgcctctcagggttataaagaacaaatatg-aattcaatgtaaagagc
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               284353 58 + 123392446 gacaaaaatctgcctttcagggttaaaaagaacaagtatgaaattaaatgtaaagaac
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      89318 57 -   1411461 gacaaaaatctgcctttcagggttataaagaacaagtacg-aattagatataaagaac
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           232278 57 +  18854210 gacaaaaatattcttttcagatttataaagaacaagtatg-aattagatataaagtgc
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58023756 54 -  94987271 ---aagtacctgcctctcagggtcataaagaatgaatata-gcttacatataaacaga
i mm10.chr17               C 0 I 4
s canFam3.chr35            26283975 56 +  26524999 gacaaaggtctgcttctcaatcttataaaaaacaaacata-aactagat-taaagagc
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            10142 53 -     22419 gacaaaagtctgcccctcagg----caaagaacaatggca-aatcagatgtaaagagc
i dasNov3.JH569887         C 0 C 0
e manLeu1.NW_012107142v1     237614 50 -    735854 M

a score=320042.000000
s hg38.chr6_GL000254v2_alt  1403192 31 +   4827813 -------------------ttg-----------gtaAGTTCTCAAT--AAATTCTATCT-ATCT
s panTro5.chr6             30276638 31 + 175400573 -------------------ttg-----------gtaAGTTCTCAAT--AAATTCTATct-atct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30507184 31 + 173848474 -------------------ttg-----------gtaAGTTCTCAAT--aaattctatct-atct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     214052 31 +   2037526 -------------------ttg-----------gtaAGTTCTCAAT--AAATTCTATct-atct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74886708 31 + 122973662 -------------------ttg-----------gtaAGTTCTCAAT--AAATTCTATCT-ATCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30760451 27 + 172585720 -------------------ttg-----------gtaAGTTCTCAAT--aaattctatct-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30055594 27 - 170955103 -------------------ttg-----------gtaAGTTCTCAAT--AAATTCTATCT-----
i macFas5.chr4             C 0 I 133
s macNem1.NW_012012100v1     305013 27 +   1495729 -------------------ttg-----------gtaaGTTCTCAAT--aaattctatct-----
i macNem1.NW_012012100v1   I 133 C 0
s cerAty1.NW_012002535v1     402928 27 -    863181 -------------------ttg-----------gtaAGTTCTCAAT--aaattctatct-----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29554968 27 -  71996105 -------------------ttg-----------gtacGTTCTCAAT--AAATTCTATCT-----
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     193017 27 -   1829203 -------------------ttg-----------gtaAGTTCTCAAT--aaattctatct-----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30364834 27 + 171630274 -------------------ttg-----------gtaAGTTCTCAAT--AAAT----TCT-ATCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           187572 31 +    515838 -------------------ttG-----------ATAAGTTCTCAAT--AAATTCTGTCT-ATCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     820080 31 -   1771730 -------------------ttg-----------gtaAGTTCTCAAT--TAATTCTGTct-atct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     306111 30 -    383796 -------------------ttg-----------gtaAG-TCTCAAT--AAATTCTGTct-atct
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               284411 33 + 123392446 -------------------ttg-----------gtaaattctcaataaaaatggtagct-atct
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      89375 31 -   1411461 -------------------ttg-----------gtaaattctcaat--aaatggtagct-gtct
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           232335 31 +  18854210 -------------------ttg-----------gtaagttctcaat--aaatactaGCA-ATCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58023814 31 -  94987271 -------------------ata-----------gcaaatcctcagt--aaatgccagct-GCCT
i mm10.chr17               I 4 C 0
s canFam3.chr35            26284031 42 +  26524999 -------------------ctgggacagacagtgtaagtcctcaat--aattggcaATG-GTCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            10195 51 -     22419 ttggtacaatgcttcatatatg-----------gtaagtcctcagt--aaatggcagttAATCT
i dasNov3.JH569887         C 0 C 0
e manLeu1.NW_012107142v1     237614 50 -    735854 M

a score=311578.000000
s hg38.chr6_GL000254v2_alt  1403223 19 +   4827813 GTCCTTCACAGGTCAAGCT
s panTro5.chr6             30276669 19 + 175400573 gtccttcacaggtcaagct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30507215 19 + 173848474 gtccttcacaggtcaagct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     214083 19 +   2037526 gtccttcacaggtcaagct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74886739 19 + 122973662 GTCCTTCACAGGTCAAGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30760478 19 + 172585720 gtccttcacaggtcaagtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30055754 19 - 170955103 GTCCTTCACAGGTCAAGCT
i macFas5.chr4             I 133 C 0
s macNem1.NW_012012100v1     305040 19 +   1495729 gtccttcacaggtcaagct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     402955 19 -    863181 gtccttcacaggtcaagtt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29554995 19 -  71996105 GTCCTTCACAGGTCAAGTT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     193044 19 -   1829203 gtctttcacaggtcaagtt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30364861 19 + 171630274 GTCCTTCACAGGTCAAGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           187603 19 +    515838 GTCCTTCACAGGTCAAGCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     820111 19 -   1771730 gtccttcacaggtcaagct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     306141 19 -    383796 gtccttcacaggtcaagct
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               284444 19 + 123392446 atccttcacaagtcaagac
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      89406 19 -   1411461 atccttcacaagtcaagac
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           232366 19 +  18854210 ATCCTTCACAAGTCAAGGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58023845 19 -  94987271 GACCTTTACAGGTTGAATT
i mm10.chr17               C 0 I 1820
s canFam3.chr35            26284073 19 +  26524999 CTCCTCCACAGATCAAGCC
i canFam3.chr35            C 0 I 4
s dasNov3.JH569887            10246 19 -     22419 GTCCTTCACAGGTCAAGTC
i dasNov3.JH569887         C 0 C 0
e manLeu1.NW_012107142v1     237614 50 -    735854 M

a score=434532.000000
s hg38.chr6_GL000254v2_alt  1403242 34 +   4827813 CCTGATT----ATAAAGTCTTTCCAGTCTACT--CTGT----CA--
s panTro5.chr6             30276688 34 + 175400573 cctgatt----ataaagtctttccagtctact--ctgt----ca--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30507234 34 + 173848474 cctgatt----ataaagtctttccagtctact--ctgt----ca--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     214102 34 +   2037526 cctaatt----ataaagtctttccagtctact--ctgt----ca--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74886758 36 + 122973662 CCTGATT----AGAAAGTCTTTCCGGTCTACT--CTGT--CACA--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30760497 34 + 172585720 cctgact----ataaagtctttctggtctact--ctgt----ca--
i rheMac8.chr4             C 0 I 135
s macFas5.chr4             30055773 34 - 170955103 CCTGACT----ATAAAGTCTTTCTGGTCTACT--CTGT----CA--
i macFas5.chr4             C 0 I 2
s macNem1.NW_012012100v1     305059 34 +   1495729 cctgact----ataaagtctttctggtctact--ctgt----ca--
i macNem1.NW_012012100v1   C 0 I 2
s cerAty1.NW_012002535v1     402974 34 -    863181 cctgact----ataaagtctttctggtctact--ctgt----ca--
i cerAty1.NW_012002535v1   C 0 I 2
s chlSab2.chr17            29555014 34 -  71996105 CCTGACT----ATAAAGTCTTTCTGGTCTACT--CTGT----CA--
i chlSab2.chr17            C 0 I 2
s colAng1.NW_012115577v1     193063 34 -   1829203 cctgact----ataaagtctttctggtctact--ctgt----ca--
i colAng1.NW_012115577v1   C 0 I 2
s calJac3.chr4             30364880 34 + 171630274 CCTGACT----ATAAAGTCTTTCTGCTCTACT--CTGT----CA--
i calJac3.chr4             C 0 I 2
s saiBol1.JH378341           187622 34 +    515838 CCTGACT----ATAAAGTCTTTCTGGTCTACT--CCGT----CA--
i saiBol1.JH378341         C 0 I 2
s cebCap1.NW_016107755v1     820130 32 -   1771730 cctgact----at--agtctttctggtctact--ccgt----ca--
i cebCap1.NW_016107755v1   C 0 I 2
s aotNan1.NW_018496904v1     306160 34 -    383796 cctgact----ataaagtctttctggtctact--ctgt----ca--
i aotNan1.NW_018496904v1   C 0 I 2
s micMur3.chr6               284463 34 + 123392446 cctgtct----atgaagtctttctggtctact--acat----ca--
i micMur3.chr6             C 0 I 2
s proCoq1.NW_012149775v1      89425 34 -   1411461 cctgtct----atgaagtctttctggtctact--ccat----ta--
i proCoq1.NW_012149775v1   C 0 I 2
s otoGar3.GL873550           232385 34 +  18854210 TCTGACT----ATAAAGTATTTCTGGTGTACT--CTGT----CA--
i otoGar3.GL873550         C 0 I 2
s canFam3.chr35            26284096 36 +  26524999 TCT--CT----GTAAAGTCTTTCCGGACTATT--CTACGTAACA--
i canFam3.chr35            I 4 C 0
s dasNov3.JH569887            10265 42 -     22419 ACTGACTCTCCATAAATTCTTTCTGGTCTACTACATGT----CACA
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58023864 1820 -  94987271 I
e manLeu1.NW_012107142v1     237614 50 -    735854 M

a score=152561.000000
s hg38.chr6_GL000254v2_alt  1403276 11 +   4827813 GTGATCTTCCC
s panTro5.chr6             30276722 11 + 175400573 gtgatcttccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30507268 11 + 173848474 gtgatcttccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     214136 11 +   2037526 gtgatcttccc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74886794 11 + 122973662 GTGATTTTCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30760666 11 + 172585720 gtgattttccc
i rheMac8.chr4             I 135 C 0
s macFas5.chr4             30055809 11 - 170955103 GTGATTTTCCC
i macFas5.chr4             I 2 C 0
s macNem1.NW_012012100v1     305095 11 +   1495729 gtgattttccc
i macNem1.NW_012012100v1   I 2 C 0
s cerAty1.NW_012002535v1     403010 11 -    863181 gtcattttccc
i cerAty1.NW_012002535v1   I 2 C 0
s chlSab2.chr17            29555050 11 -  71996105 GTGATTTTCCT
i chlSab2.chr17            I 2 C 0
s colAng1.NW_012115577v1     193099 11 -   1829203 gtgattttccc
i colAng1.NW_012115577v1   I 2 C 0
s calJac3.chr4             30364916 11 + 171630274 GTGATTTTCCC
i calJac3.chr4             I 2 C 0
s saiBol1.JH378341           187658 11 +    515838 GTGAGTCTCCC
i saiBol1.JH378341         I 2 C 0
s cebCap1.NW_016107755v1     820164 11 -   1771730 gtgattttccc
i cebCap1.NW_016107755v1   I 2 C 0
s aotNan1.NW_018496904v1     306196 11 -    383796 gtgattttccc
i aotNan1.NW_018496904v1   I 2 C 0
s micMur3.chr6               284499 11 + 123392446 gtgattttgcc
i micMur3.chr6             I 2 C 0
s proCoq1.NW_012149775v1      89461 11 -   1411461 atcattttgcc
i proCoq1.NW_012149775v1   I 2 C 0
s otoGar3.GL873550           232421 11 +  18854210 GTGATTTTCCT
i otoGar3.GL873550         I 2 C 0
s canFam3.chr35            26284132 11 +  26524999 GTGATTTTCCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            10307 11 -     22419 GTGATTTCTGC
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58023864 1820 -  94987271 I
e manLeu1.NW_012107142v1     237614 50 -    735854 M

a score=272899.000000
s hg38.chr6_GL000254v2_alt  1403287 24 +   4827813 -TTCCTCTAAATACTTGACATATTT
s panTro5.chr6             30276733 24 + 175400573 -ttcctctaaatacttgacatattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30507279 24 + 173848474 -ttcctctaaatacttgacatattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     214147 24 +   2037526 -ttcctctaaatacttgacatattt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74886805 24 + 122973662 -TTCCTCTAAATACTTGACATATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30760677 24 + 172585720 -ttcctctaaatacttgacatattt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30055820 24 - 170955103 -TTCCTCTAAATACTTGACATATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     305106 24 +   1495729 -ttcctctaaatacttgacatattt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     403021 24 -    863181 -ttcctctaaatacttgacatattt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29555061 24 -  71996105 -TTCCTCTGAATACTTGACATATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     237664 24 -    735854 -TTCCTCTAAATACTTGACATATTT
i manLeu1.NW_012107142v1   M 50 C 0
s colAng1.NW_012115577v1     193110 24 -   1829203 -ttcctctaaatatttgacatattt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30364927 24 + 171630274 -TTCCTCTAAACACTTGGCATATTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           187669 24 +    515838 -TTCCTCTAAACACTTGATATATTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     820175 24 -   1771730 -ttcctctaaacacttgatatattt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     306207 24 -    383796 -ttcctctaaacacttggcatattt
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               284510 19 + 123392446 ------ttcaacactttacattttt
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      89472 19 -   1411461 ------ttcaacacgttacattttt
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           232432 17 +  18854210 ------TTCAACAC--TACATTTTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26284143 22 +  26524999 -TTCTTCTGAACAC--AACGTTTTT
i canFam3.chr35            C 0 I 7
s dasNov3.JH569887            10318 18 -     22419 CTTCCCCGGAACAC-------ACTT
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58023864 1820 -  94987271 I

a score=1716922.000000
s hg38.chr6_GL000254v2_alt  1403311 115 +   4827813 TAATTCTACAACTCATT-TGAAAATTAATCGTGGTTTACACTGTGATATCTGTATTCACATATCAC-TTTTAACATTTTGATG--------------CTGAAATTTAG----GCT-CATAAGGAATGAAAACTGTA
s panTro5.chr6             30276757 115 + 175400573 taattctacaactcatt-tgaaaattaatcgtggtttacactgtgatatctGTATTCACATATCAC-TTTTAACATTTTGATG--------------CTGAAATTTAG----GCT-CATAAGGAATGAAAACTGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30507303 115 + 173848474 taattctacaactcatt-tgaaaattaatcgtggtttacactgtgatatctGTATTCACATATCAC-TTTTAACATTTTGATG--------------CTGAAATTTAG----GCT-CATAAGGAATGAAAACTGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     214171 115 +   2037526 taattctacaactcatt-tgaaaattaatcgtggtttacactgtgatatctGTATTCACATATCAC-TTTTAACATTTTGATG--------------CTGAAATTTAG----GCT-CATAAGGAATGAAAACTGTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74886829 116 + 122973662 TAATTCTACAACGAATT-TGAAAATTAATCATGGTTTACACTGCGATATCTGTATTCACATATCACTTTTTAACATTTTGATG--------------CTGAAATTTAG----GCT-CATAAGGAATGAAAACTGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30760701 115 + 172585720 taattctacaactcatt-tgaaaattaatcatggtttacactgtgatatctGTATTCCTATATCAC-TTTTAACATTTTGGTG--------------CTGACATTTAG----GCT-CATAAGGAATGAAAACTGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30055844 115 - 170955103 TAATTCTACAACTCATT-TGAAAATTAATCATGGTTTACACTGTGATATCTGTATTCCTATATCAC-TTTTAACATTTTGGTG--------------CTGACATTTAG----GCT-CATAAGGAATGAAAACTGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     305130 115 +   1495729 taattctacaactcatt-tgaaaattaatcatggtttacactgtgatatctGTATTCATATATCAC-TTTTAACATTTTGGTG--------------CTGACATTTAG----GCT-CATAAGGAAGGAAAACTGTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     403045 115 -    863181 taattctacaactcatt-tgaaaattaatcatggtttacactgtgatatctGTATTCATATATCAC-TTTTAACATTTTGGTG--------------CTGACATTTAG----GCT-CATAAGGAATGAAAACTGTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29555085 115 -  71996105 TAATTCTACAACTCATT-TGAAAATTAATCATGGTTTACACTGTGATATCTGTATTCATATATCAC-TTTTAACATTTTGGTG--------------CTGACATTTAG----GCT-CATAAGGAATGAAAACTGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     237688 115 -    735854 TAATTCTACAACTCATT-TGAAAATTAATCATGGTTTACACTGTGATATCTGTATTCATATATCAC-TTTTAACATTTTGGTG--------------CTGACATTTAG----GCT-CATAAGGAATGAAAACTGTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     193134 115 -   1829203 taattctacaactcatt-tgaaaattaatcatggtttacactgtgatatctGTATTCATATATCAC-TTTTAACATTTTGGTG--------------CTGACATTTAG----GCT-CCTAAGGAATGAAAACTGTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30364951 111 + 171630274 TAATTCTATAACTCATT-TGAAAATTAATCATGACTTACAC--TGATATCTGTAGTCATATATCAC-TTTTAACATTTTGATG--------------CTGAGATTTAG----GCT-CATGAGTG--GAAAACTGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           187693 115 +    515838 TATTTCTACAACTCATT-TGAAAATTAACCATGACTTACACTGTGATATCTGTATTCATATATCGC-TTTTAACATTTTGATG--------------CTGAAATTTCG----GCT-CATAAGGAGTGAAAACTGTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     820199 115 -   1771730 tatttctacaactcatt-tgaaaatttaccatgacttacactgtgatatctGTATTCATATATCAC-TTTTAACATTTTGATG--------------CTGAAATTTAG----GCT-CATAAGGAGTGAAAACTGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     306231 115 -    383796 taattctacaactcatt-tgaaaattaatcatgacttgcactgtgatatctGTATTCATATATCAC-TTTTAACATTTTGATG--------------CTGAAATTTAG----GCT-CATAAAGAGTGAAAACTGTA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               284529 112 + 123392446 taattctacaactcatt-tgaaaattaatcatggtttacattgtgatatctgtattcatgtatcac-ttttaaca-tttaaTA--------------CTGAAAC--AG----GCT-CATAAATGGTAGGAACTGTA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      89491 112 -   1411461 taattctacaactcatt-tgaaaattaatcatggtttacattgtgatatctGTATTCATGTATCAC-TTTTAACA-TTTAATG--------------CTGAAAC--AG----GCT-CCTAAAAGGTAGGAACTGTA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           232449 114 +  18854210 TCATTCTATAACTCATT-TGAAAATTAATCATGGTTTACACTGTGATATCTGTTTTCATATACCAC-TTTTAACA-TTTAACC--------------CTGAAACTTAG----GCT-CATAAAGGATAGAACCTATA
i otoGar3.GL873550         C 0 I 539
s mm10.chr17               58025684  91 -  94987271 TAATCCTAAAAGTATTTGTAAAGATCGATTATTGATTA------------------CCTATATCTA-TAGCCACATTTTAATG--------------TTGAAATCTAG------------AAGTGTGTGAATTATA
i mm10.chr17               I 1820 C 0
s canFam3.chr35            26284172 106 +  26524999 TATTCCT--AAGTCACT-TGAAAACCAGCCAGGGTTTCCATGGTGATACCTG--------TATCAT-TTGTAACACTTTCATG--------------CTGAAATTTAG----ACTGTAAACGGGAGGTAATCTATA
i canFam3.chr35            I 7 C 0
s dasNov3.JH569887            10336 133 -     22419 TATTTCTACAAGTCATC-TGAAAATTAATCATGGTTTACATGGTGACATATGTATACTTACACCAC-TTTTCACCTTTTGCTGTTGCTGCCTCTCAACTGAAATTTAGTTTTACC-TAAAAAGAATAGGAACTGAA
i dasNov3.JH569887         C 0 C 0

a score=1170198.000000
s hg38.chr6_GL000254v2_alt  1403426 89 +   4827813 ATTTATATCTACAAAT--ATGATGCCTCTATATTGTTGGAAAGGATCTGATATCAAATATTTGGTCTCACTGACCTCTTAGGAACATTCTT
s panTro5.chr6             30276872 89 + 175400573 ATTTATATCTACAAAT--ATGATGCCTCTATATTGTTGGAAAGGATCTGATATCAAATATTTGGTCTCACTGACCTCTTAGGAACATTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30507418 89 + 173848474 ATTTATATCTACAAAT--ATGATGCCTCTATATTGTTGGAAAGGATCTGATATCAAATATTTGGTCTCACTGACCTCTTAGGAACATTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     214286 89 +   2037526 ATTTACATCTACAAAT--ATGATGCCTCTACATTGTTGGAAAGGATCTGATATCAAATATTTGGTCTCACTGACCTCTTAGGAACATTCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74886945 89 + 122973662 ATTTATATCTACAAAT--ATGATGCCTCTATATTGTTGGAAAGGAACTGATATCAAATATTTGGTCTCACTGACCTCTTAGGAACATTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30760816 86 + 172585720 ATTTACATCTACAAAT-----ATGCCTCTATATTGTTGGAAAGGATCTGATATCAAATATTTGGTCTCATTGACCTCTTAGGAACATTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30055959 86 - 170955103 ATTTACATCTACAAAT-----ATGCCTCTATATTGTTGGAAAGGATCTGATATCAAATATTTGGTCTCATTGACCTCTTAGGAACATTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     305245 86 +   1495729 ATTTACATCTACAAAT-----ATGCCTCTATATTGTTGGAAAGGATCTGATATCAAATATTTGGTCTCATTGACCTCTTAGGAACATTCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     403160 86 -    863181 ATTTACATCTACAAAT-----ATGCCTCTATATTGTTGGAAAGGATCTGATATCAAATATTTGGTCTCATTGACCTCTTAGGAACATTCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29555200 86 -  71996105 ATTTACATCTATAAAT-----ATGCCTCTGTATTGTTGGAAAGGATCTGATATCAAATATTTGGTCTCACTGACCTCTTAGGAACATTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     237803 86 -    735854 ATTTACATCTACAAAT-----ATGCCTCTGTATTGTTGGAAAGGATCTGATATCAAATATTTGGTCTCATTGACCTCTTAGGAACATTCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     193249 86 -   1829203 ATTTACATCTACAAAT-----ATGCCTCTATATTGTTGGAAAGGATCTGATATCAAATATTTGGTCTCATTGACCTCTTAGGAACATTCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30365062 89 + 171630274 ATTTGTATCTACAATT--GTGATGCCTCTATATTATTGGAAAGGACTTGATATCAAATATTTGGTCTCACTCACCTCTTAGGAACATTCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           187808 89 +    515838 ATTTGTATCTACAATT--ATGATGCCTCTACATTATTGGAAAGGACCTGATATCAAATATTTGGTCTCACTGACCTCTTAGGAACATTCTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     820314 89 -   1771730 ATCTGTATCTACAATT--ATGATGCTTCTATATTATTGGAAAGGACCTGATATCAAATATTTGGTCTCACTGACCTCTTAGGAACATTCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     306346 89 -    383796 ATTTGTATCTACAATT--ATGATGCCTCTATATTATTGGAAAGGATTTGATATCAAATATTTGGTCTCACTGACCTCTTAGGAACATTCTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               284641 88 + 123392446 ATTTACATCTAAATTGTAATGATGTCTCTATATTA-CAGAAAGGACCTGATATCAAATATTCTGTAT--TTGACCTCTTAGGTATACTCTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      89603 89 -   1411461 ATTTATATCTAAAATTTAATGATGTCTCTATATTATCAGAGACTACCTGATATCAAATATTCCATAT--TTGACCTCTTAGGTATATTCTG
i proCoq1.NW_012149775v1   C 0 C 0
s mm10.chr17               58025775 82 -  94987271 ATGTGTATCTACAAGT--GATAAACTTC-ATAATATTAGAGAGGCTCTAATACCTAATATTTTGTCT----GACTTCTTAG--ACATTCTT
i mm10.chr17               C 0 I 1157
s canFam3.chr35            26284278 89 +  26524999 ATTTAGATTGACAAAT--ACGATGTGTCTCTGTTACTGGAATGAGCCTGGTATCAGTTATTGGATCTCACTGACTTCCTGCCTATGTTCCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            10469 84 -     22419 ATTTTTATCTACAGAGATATGATG--TCTATATGATTAGAGAAT-----ATGAAAAATATTCTGACTTGCTGACCTCTTAGGTACATTCAT
i dasNov3.JH569887         C 0 C 0
e otoGar3.GL873550           232563 539 +  18854210 I

a score=893419.000000
s hg38.chr6_GL000254v2_alt  1403515 72 +   4827813 ATTTGTCTACGTAAGCTTATTTTGAGATTGTAAACGTATGATCATCTTACTTTTACTTCTCTGTACATGGCT
s panTro5.chr6             30276961 72 + 175400573 ATTTGTCTACGTAAGCTTATTTTGAGATTGTAAACGTATGATCATCTTACTTTTACTTCTCTGTACATGGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30507507 72 + 173848474 ATTTGTCTATGTAAGCTTATTTTGAGATTGTAAACGTATGATCATCTTACTTTTACTTCTCTGTACATGGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     214375 72 +   2037526 ATTTGTCTACGTAAGCTTATTTTGAGATTGTAAAAGTATGATCATCTTACTTTTACTTCTCTGTACATGGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74887034 72 + 122973662 ATTTGTCTATGTAAGTTTATTTTGAGATTTTAAACGTATGATCATCTTACTTTCATTTCTCTGTACATGGCT
i nomLeu3.chr1a            C 0 I 379
s rheMac8.chr4             30760902 72 + 172585720 ATTTGTCTATGTAAGCTTATTTTGAGATTTTAAACATACGATCACCTTACTTTTACTTCTCTGTACATGGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30056045 72 - 170955103 ATTTGTCTATGTAAGCTTATTTTGAGATTTTAAACATACGATCACCTTACTTTTACTTCTCTGTACATGGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     305331 72 +   1495729 ATTTGTCTATGTAAGCTTATTTTGAGATTTTAAACATACGATCACCTTACTTTTACTTCTCTGTACATGGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     403246 72 -    863181 ATTTGTCTATGTAAGCTTATTTTGAGATTTTAAACATACGATCACCTTACTTTTACTTCTCTGTACATGGCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29555286 72 -  71996105 ATTTGTCTATGTAAGTTTATTTTGAGATTTTAAACATACGATCATCTTACTTTTACTTCTCTGTACATGGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     237889 72 -    735854 ATTTGTCTATGTAAGCTTATTTTGAGATTTTAAACATACGATCACCTTACTTTTACTTCTCTGTACATGGCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     193335 68 -   1829203 ATT----TATGTAAGTTTATTTTGAGATTTTAGACATACAATCATCTTACTTTTACTTCTCTGTACATGGCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30365151 69 + 171630274 ATTTGCCTATGTAAGCTTATTTTGAGATTTTAAAAGTATGATCTT---ACTTTTACTTCTCTGTACATGGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           187897 68 +    515838 ATTTGCCTATGTAAGCTTATTTTAAGATTTTAAAAGTATGATCGT----CATTTACTTCTCTGTACATGGCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     820403 72 -   1771730 ATTTGCCTATGTAAGCTTATTTTGGGATTTAAAAAGTGTGATCTTCTTActtttacttctctgtacacggct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     306435 72 -    383796 ATTTGCCTATGTAAGCTTATTTTGAGATTTTAAAAGTATGATCTTCTTACTTTTACTTCTCTGTACATGGCT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               284729 71 + 123392446 ATTTGCCT-TATATACCTATTTTGAGATTTTAAAATTATGATCATCTTACTTTTATTTCTCTGTACATAGCA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      89692 71 -   1411461 ATTTGCCT-TATATTCCTATTTTGAGATTTTAAAATTATGACCATCTTACTTCTATTTCTCTGTACATAGCA
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr35            26284367 68 +  26524999 ATCTGTCCGTGGACACCTATTCTGATATTTAACAAAGGTAACCGTCCTA---TTACTTTTCAGAACACAAC-
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            10553 67 -     22419 ACTTGCCTACATATACCTATTTTGAGATTTTAAA-ATATGACCAC----CTTTTATTTTCCTGTATATAACA
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58025857 1157 -  94987271 I
e otoGar3.GL873550           232563 539 +  18854210 I

a score=1439113.000000
s hg38.chr6_GL000254v2_alt  1403587 119 +   4827813 TCTAGCACAATACTTAACATTAGAGTCTGTGATCCCA-----------AGTTCTCAAAATTAATGA-TTTGCTGATTGCTGATGATCCTTGACACATAATATCTGAGCATCTTTTTTA-AATATCTGCCATA
s panTro5.chr6             30277033 118 + 175400573 TCTAGCACAATACTTAACATTAGAGTCTGTGATCCCA-----------AGTTCTCAAAATTAATGA-TTTGCTGATTGCTGATGATCCTTGACACATAATATCTGAGCGTC-TTTTTA-AATATCTGCCATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30507579 118 + 173848474 TCTAGCACAATCCTTAACATTAGAGTCTGTGATCCCA-----------AGTTCTCAAAATTAATGA-TTTGCTGATTGCTGATGATCCTTGACACATAATATCTGAGCGTC-TTTTTA-AATATCTGCCATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     214447 118 +   2037526 TCTAGCACAATACTTAACATTAGAGTCTGTGATCCCA-----------AGTTCTCAAAATTAATGA-TTTGCTGATTGCTGATGATCCTTGACACATAATATCTGAGCATC-TTTTTA-AATATCTGCCATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74887485 118 + 122973662 tCTAGCACAATACTTAACATTAGAGTCTGTGATCCCA-----------AGTTCTCAAAATTAATGA-TTTGCTGATTGCTGATGATCCTTGACACATAATATCTGAGCATC-TTTTTA-AATATCTGCCATA
i nomLeu3.chr1a            I 379 C 0
s rheMac8.chr4             30760974 115 + 172585720 TCTAGCACAGTACTTAACATTAGAGTCTGTGATCCCA-----------AATTCTCAAAAT---TGA-TTTGTTGATTGCTGATGATCCTTGACACATAATATCTGAGCATC-TTTTTA-AATATCTGCCATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30056117 115 - 170955103 TCTAGCACAGTACTTAACATTAGAGTCTGTGATCCCA-----------AATTCTCAAAAT---TGA-TTTGTTGATTGCTGATGATCCTTGACACATAATATCTGAGCATC-TTTTTA-AATATCTGCCATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     305403 118 +   1495729 TCTAGCACAGTACTTAACATTAGAGTCTGTGATCCCA-----------AATTCTCAAAATTAATGA-TTTGTTGATTGCTGATGATCCTTGACACATAATATCTGAGCATC-TTTTTA-AATATCTGCCATA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     403318 118 -    863181 TCTAGCACAGTACTTAACATTAGAGTCTGTGATCCCA-----------AATTCTCAAAATTAATGA-TTTGTTGATTGCTGATGATCCTTGACACATAATATCTGAGCATC-TTTTTA-AATATCTGCCATA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29555358 118 -  71996105 TCTAGCACAGTACTTAACATTAGAGTCTGTGACCCCA-----------AGTTCTCAAAATTAATTA-TTTGTTGATTGCTGATGATCCTTGACACATAATATCTGAGCATC-TTTTTA-AATATCTGCCATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     237961 118 -    735854 TCTAGCACAGTACTTAACATTAGAGTCTGTGATCCCA-----------AATTCTCAAAATTAATGA-TTTGTTGATTGCTGATGATCCTTGACACATAATATCTGAGCATC-TTTTTA-AATATCTGCCATA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     193403 118 -   1829203 TCTAGCACAGTACTTAACATTAGAGTCTGTGATCCCA-----------AGTTCTCAAAATTAATGA-TTTGTTGATTGCTGATGATCCTTGACACATAATATCTGAGCATC-TTTTTA-AATATCTGCCATA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30365220 115 + 171630274 TCTAGCACAGTACTTAACATTACAGTCTGTGATCCCA-----------AGTTCTCAAAATTAATGACTTTGTTGATTGCTGATGATCCTTGACAC---ATATCTGAACATC-TTTTTA-AATATTTGCCAT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           187965 118 +    515838 TCTAGCACAGTACTTAACATTAAAGTCTGTGATCCCA-----------AGTTCTCAAAATTAATGA-TTTGTTGATTGCTGATGATCCTTGACACATAATATCTGAACATC-TTTTTA-AATATTTGTCATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     820475 118 -   1771730 tctagcacagtacttaacattagagtctgtgatccca-----------agttctcaaaattaatga-tttgttgatttCTGATGATCCCTGACACATAATATCTGAACATC-TTTTTA-AATATTTGCCATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     306507 118 -    383796 TCTAGCATAGTACTTAACATTAGAGGCTGTGATCCCA-----------AGTTCTCAAAAGTAATGA-TTTGTTGATTGCTGATGATCCTTGACACATAGTATCTGAACATC-TTTTTA-AATATTTGCCATA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               284800 110 + 123392446 TCTAGCGCAGTAC------TTAGAGTCTGTGATCCTA-----------AGTTCTCTAAATTAATAA-TTTTTTGAT---TGATGATCCTTACCACTTAATATCTGAGCATC-TTTTTCTTATATTTGCCATA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      89763 105 -   1411461 TCTAGCACAGTAC------TTAGAGTC--TGATCCTA-----------AGTTCTCAAAATTAATGA-TTTTTTGAT---TGATGATCCTTACCAC---ATATCTGAGCATC-TTTTTCTTATATTTGCCATA
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr35            26284435  93 +  26524999 -CCAGCACGGT--------TTGTGTTCAGCAAC---------------GGTTTTTAGAAC---TCA-TCTTCTGGTT--------CCCTTGTCGC-TGGTATTTGAGCACC-TTTCTC-CTTTGCTCCTGAG
i canFam3.chr35            C 0 I 3
s dasNov3.JH569887            10620  99 -     22419 TCTAGAATAGTACTTAATGT--GAGTCTGTGATTTCAAATTCCCTCCTAGTTCTCAAAATTAAAGA-TTCGTTGATT----ATTATCCTTATCACATGAAGTCTGA--------------------------
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58025857 1157 -  94987271 I
e otoGar3.GL873550           232563 539 +  18854210 I

a score=234087.000000
s hg38.chr6_GL000254v2_alt  1403706 18 +   4827813 ACATTGTATCTA--TTTTTA
s panTro5.chr6             30277151 18 + 175400573 ACATTGTATCTA--TTTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30507697 18 + 173848474 ACATTGTATCTA--TTTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     214565 18 +   2037526 ACATTGTATCTA--TTTTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74887603 18 + 122973662 ACATTGTATCTA--TTTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30761089 20 + 172585720 ACATTGTATCTATCTTTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30056232 20 - 170955103 ACATTGTATCTATCTTTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     305521 20 +   1495729 ACATTGTATCTATCTTTTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     403436 20 -    863181 ACATTGTATCTATCTTTTTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29555476 20 -  71996105 ACATTGTATCTATCTTTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     238079 20 -    735854 ACATTGTATCTATCTTTTTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     193521 20 -   1829203 ACATTACATCTATGTTTTTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30365335 20 + 171630274 ACATTGTATCTATCTTTTTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           188083 20 +    515838 ACATTGTATCTATCTTTTTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     820593 20 -   1771730 ACATTGTATCTATCTTTTTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     306625 20 -    383796 ACATTGTATCTATCTTTTTA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               284910 16 + 123392446 GAATTGTATC----ATTTTA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      89868 16 -   1411461 GCATTGTATC----GTTTTA
i proCoq1.NW_012149775v1   C 0 C 0
s mm10.chr17               58027014 16 -  94987271 ATGCTGCATC----TTTTTA
i mm10.chr17               I 1157 C 0
s canFam3.chr35            26284531 17 +  26524999 ---CCATGTCCACGTTTTTA
i canFam3.chr35            I 3 C 0
s dasNov3.JH569887            10719 20 -     22419 ACATTGTATCTAGATTCTTA
i dasNov3.JH569887         C 0 C 0
e otoGar3.GL873550           232563 539 +  18854210 I

a score=2238076.000000
s hg38.chr6_GL000254v2_alt  1403724 156 +   4827813 TTAAGCCATT---------------------------------------------------------TCCCAGT------------------------------CTTCCTTGAAGTTTACAGATA-----TGTTTGCTTTATATGCATGTTCTGGGCTCTCACATTTTG-TACCTACTAGCACAGTTTTATTATATTCTAATTATTCA-TTCATgttccttgaggtcagagaacacagatttcaactttg
s panTro5.chr6             30277169 156 + 175400573 TTAAACCATT---------------------------------------------------------TCCCAGT------------------------------CTTCCTTGAAGTTTACAGATA-----TGTTTGCTTTATATGCATGTTCTGGGCTCTCACATTTTG-TACCTACTAGCACAGTTTTATTATATTCTAATTATTCA-TTCATgttccttgaggtcagagaacacagatttcaactttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30507715 156 + 173848474 TTAAACCATT---------------------------------------------------------TCCCAGT------------------------------CTTCCTTGAAGTTTACAGATA-----TGTTTGCTTTATATGCATGTTCTGGGCTCTAACATTTTG-TACCTACTAGCACAGTTTTATTATATTCTAATTATTCA-TTCATgttccttgaggtcagagaacacagatttcaactttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     214583 156 +   2037526 TTAAACCATT---------------------------------------------------------TCCCAGT------------------------------CTTCCTTGAAGTTTACAGATA-----TGTTTGCTTTATATGCATGTTCTGGGCTCTCACATTTTG-TACCTACTAGCACAGTTTTATTATATTCTAATTATTCA-TTCATgttccttgaggtcagagaacacagatttcaactttg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74887621 156 + 122973662 TTAAATCATT---------------------------------------------------------TCCCAGT------------------------------CTTCCTTGAAGTTTACAGATA-----TGTTTGCTTTATATGCATGTTCTGGGCTCTCACATTGTG-TACCTACTAGCACACTTTTATTATATTCTAATTATTCA-TTCATgttccttgaggtcagagaacacagatttcaactttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30761109 156 + 172585720 TTAAATCATT---------------------------------------------------------TCCCAGT------------------------------CTTCCTTGAAGTTTACAGATA-----TGTTTGCTTTATATGTATGTTCTGGGTTCTCACATTTTG-TACCTCCTGGCACACTTTTATTGTATTCTAATTATTCA-TTCATgttccttgaggtcagagaacatagatttcaactttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30056252 156 - 170955103 TTAAATCATT---------------------------------------------------------TCCCAGT------------------------------CTTCCTTGAAGTTCACAGATA-----TGTTTGCTTTATATGTATGTTCTGGGTTCTCACATTTTG-TACCTCCTGGCACACTTTTATTGTATTCTAATTATTCA-TTCATgttccttgaggtcagagaacatagatttcaactttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     305541 156 +   1495729 TTAAATCATT---------------------------------------------------------TCCCAGT------------------------------CTTCCTTGAAGTTTACAGATA-----TGTTTGCTTTATATGTATGTTCTGGGCTCTCACATTTTG-TACCTCCTGGCACACTTTTATTGTATTCTAATTATTCA-TTCATgttccttgaggtcaaagaacacagatttcaactttg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     403456 156 -    863181 TTAAATCATT---------------------------------------------------------TCCCAGT------------------------------CTTCCTTGAAGTTTACAGATA-----TGTTTGCTTTATATGTATGTTCTGGGCTCTCACATTTTG-TACCTCCTGGCACACTTTTATTGTATTCTAATTATTCA-TTCATGTTCCTTTAGGTCAAAGAACACAGATTTCAACTTTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29555496 156 -  71996105 TTAAATCATT---------------------------------------------------------TCCCAGT------------------------------CTTCCTTGAAGTTTACAGATA-----CGTTTGCTTTATATGCATGTTCTGGGGTCTCATATTTTG-TACCTCCTAGCACACTTTTATTGTATTCTAATTATTCA-TTCATgtttcttgaggtcagagaacacagatttcaactttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     238099 156 -    735854 TTAAATCATT---------------------------------------------------------TCCCAGT------------------------------CTTCCTTGACGTTTAGAGGTA-----TGTTTGCTTTATATGTATGTTCTGGGCTCTCACATTTTG-TACCTCCTGGCACACTTTTATTGTATTCTAATTATTCA-TTCATgttccttgaggtcaaagaacacagatttcaactttg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     193541 156 -   1829203 TTAAATCATT---------------------------------------------------------TCCCAGT------------------------------CTTCCCTGAAGTTTACAGATA-----TGTTTGCTTTATATGCATGTTCTGGGCTCTCATATTTTG-TACCTCCTAGCACACTTTTATTGTATTCTAATTATTCA-TTCATgttccttgaggtcagagaacacagatttcaactttg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30365355 156 + 171630274 TTAAATCATT---------------------------------------------------------TCCCAGT------------------------------CCTCCTTGAAGTTTACAGACA-----TGTTTTCTTTATATGCATGTTCTGGGCTCTCACATTTTG-TACCTACTAGCACACTTTTATTGTATCATAATTATTCA-TTCATGTTCGTTGATGTCAGAGAACACATACTTCAACTTCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           188103 156 +    515838 TTAAATCATT---------------------------------------------------------TCCCAGT------------------------------CCTCCTTGAAGTTTACAGACA-----TGTTTTCTTTATATGCATGTTCTGGGCTCTCACATTTTG-TACCTACTAGCATACTTTTATTGTATTCTAATTACTCA-TTCATgttcattgatgtcagagaacacagatttcaactttg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     820613 157 -   1771730 TTAAATCATT---------------------------------------------------------TCCCAGT------------------------------CCTCCTTGAAGTTTACAGACA-----TGTTTTCTTTATATGCATGTTCTGGGCTCTCACATTTTG-TACCTACTAGCACACGTTTATTGTATTCTAATTACTCATTTCATgttcattgatgtcagagaacacagatttcagctttg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     306645 156 -    383796 TTAAATCATT---------------------------------------------------------TCCCAGT------------------------------CCTCCTTGAAGTTTACAGACA-----TGTTTTCTTTATATGCATGTTCTGGGCTCCCATATTTTG-TACCTACTAGCACACTTTTATTGTATTATAATTATTCG-TTCATGTTCGTTGATGTCAGAGAACACATATTTCAACTTTG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               284926 157 + 123392446 TTAAAGCATT---------------------------------------------------------TACCAGT------------------------------CTTCCTTAAAGTTTACAGATA-----TGTTTGTTTCCTATGCATATCCTTGGCTCTCACATTTTGTTACCTACTAGTGTACTTTTATTGTATTCTAATTATTCA-TTTGTATTCCTTGAGGTTAGGGAACACAGATCTCAACTTTG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      89884 156 -   1411461 TTAAAGCATT---------------------------------------------------------TACCAGT------------------------------CTTCCTTGAAGTTTATAGATA-----TATTTGTTTTATATGCATGTCCTTGGCTCTCACATTTTGTTACCTACTAGTGTACTTTTATTGTACTCTAATTATT-A-TTtgtgttccttgaggtcagggaacacagatctcaactttg
i proCoq1.NW_012149775v1   C 0 I 77
s otoGar3.GL873550           233102 241 +  18854210 ttaagcgattctcttgcctcaacctcccaagaagctgggactacaggagcccgccacaacaccctgctatCTGTATCTATCTTTTTATTAAAGCATTTACTAGTCTTCCTTGACACTTACAGGTA-----TGTTTGTTTTGTATGCATGTCCTAGGCTCTCACAATTTG-TACCTACTAGTGTACTTTTATTGTATTCTAATTATTCA-TTTGTGCTCCTTGAGATCAGGGAACAC--ATTTCAAATTTG
i otoGar3.GL873550         I 539 C 0
s mm10.chr17               58027030 142 -  94987271 TTACAGCATG---------------------------------------------------------TACCTGT------------------------------CCCCCACGAAGTCTAGAGGTACATCCTGTAGACTTTGTA------TCCCTGGCTC-AAC-------CACCGACTAGTGCATTTTCTCCATACTCTAACTATTCA-TCTGT----TTTAAAG--AGAGAACACAGATTTCAACTATG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26284548 126 +  26524999 CTGAAACATC---------------------------------------------------------AGCGAGT------------------------------CCTCCTGGAGG--TGCAGACA-------------CCATA-----GTCCTAGGCCC--------TG-TG-----TGGGTCTCTCGTGGCGGGTTCCACCGTGTCC-TTTGTACCCCTTGAGGTCACAGCATCC--TTTCCAACGGTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            10739 150 -     22419 ATAAAGCATT---------------------------------------------------------TACCACT------------------------------CTCCCTTTAAGTACACAGGCA-----TATTTGTTTGATA----TATCCTGGGCTCTTATATTTTG-TACATACTAGTGTTCATTCCTTGTATTCTAATTATTCA-CTCGCATTCATTAAGGTCAGGGGACAA--TTTTCAATTTTG
i dasNov3.JH569887         C 0 C 0

a score=11504.000000
s hg38.chr6_GL000254v2_alt  1403880 1 +   4827813 c
s panTro5.chr6             30277325 1 + 175400573 c
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30507871 1 + 173848474 c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     214739 1 +   2037526 c
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74887777 1 + 122973662 c
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30761265 1 + 172585720 c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30056408 1 - 170955103 c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     305697 1 +   1495729 c
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     403612 1 -    863181 C
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29555652 1 -  71996105 c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     238255 1 -    735854 c
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     193697 1 -   1829203 c
i colAng1.NW_012115577v1   C 0 C 0
s micMur3.chr6               285083 1 + 123392446 C
i micMur3.chr6             C 0 I 806
s otoGar3.GL873550           233343 1 +  18854210 C
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58027172 1 -  94987271 C
i mm10.chr17               C 0 I 1
s canFam3.chr35            26284674 1 +  26524999 C
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            10889 1 -     22419 T
i dasNov3.JH569887         C 0 C 0
e proCoq1.NW_012149775v1      90040 77 -   1411461 I
e saiBol1.JH378341           188259 0 +    515838 C
e aotNan1.NW_018496904v1     306801 0 -    383796 C
e cebCap1.NW_016107755v1     820770 0 -   1771730 C
e calJac3.chr4             30365511 0 + 171630274 C

a score=147015.000000
s hg38.chr6_GL000254v2_alt  1403881 13 +   4827813 aggctcagcctca
s panTro5.chr6             30277326 13 + 175400573 aggctcagcctca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30507872 13 + 173848474 aggctcagcctca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     214740 13 +   2037526 aggctcagcctca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74887778 13 + 122973662 aggctcagcctca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30761266 13 + 172585720 aggttcagcctca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30056409 13 - 170955103 aggttcagcctca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     305698 13 +   1495729 aggttcagcctca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     403613 13 -    863181 AGGTTcagcctca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29555653 13 -  71996105 aggttcagcctca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     238256 13 -    735854 aggttcagcctca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     193698 13 -   1829203 aggttcagcctca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30365511  8 + 171630274 -----CAGCCTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           188259  8 +    515838 -----cagcctca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     820770  8 -   1771730 -----cagcctca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     306801  8 -    383796 -----CAGCCTCA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           233344 13 +  18854210 AGCCCCAGCCTCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58027174 13 -  94987271 GAGTCTGGTCTCA
i mm10.chr17               I 1 C 0
s canFam3.chr35            26284675 13 +  26524999 CGCCCCAGCTCCA
i canFam3.chr35            C 0 I 1101
s dasNov3.JH569887            10890 13 -     22419 AGCCCCCGTCTCA
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               285084 806 + 123392446 I
e proCoq1.NW_012149775v1      90040 77 -   1411461 I

a score=829994.000000
s hg38.chr6_GL000254v2_alt  1403894 73 +   4827813 gct--caaaacctggcatagttgctcaataaat-ct-ttactgaTTAGACTGTGAGCTTTTGTTGGGAAAAGGATAT
s panTro5.chr6             30277339 74 + 175400573 gct--caaaacctggcatagttgctcaataaatact-ttactgaTTAGACTGTGAGCTTTTGTTGGGAAAAGGATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30507885 74 + 173848474 gct--caaaacctggcatagttgctcaataaatact-ttactgattagactGTGAGCTTTTGTTGGGAAAAGGATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     214753 74 +   2037526 gct--caaaacctggcatagttgctcaataaatact-ttactgaTTAGACTGTGAGCTTTTGTTGGGAAAAGGATAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74887791 74 + 122973662 gct--caaaacctggcatagttgctcaataaacact-ttattgaataaaCTGTGAGCTTTTGTTGGGAAAAGGATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30761279 74 + 172585720 gct--caaaacctggcatagttgctcaataaatact-ttattgaatagatTGTGAGCTTCTGTTGGGAAAAGGATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30056422 74 - 170955103 gct--caaaacctggcatagttgctcaataaatact-ttattgaatagatTGTGAGCTTCTGTTGGGAAAAGGATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     305711 74 +   1495729 gct--caaaacctggcatagttgctcaataaatact-ttattgaatagatTGTGAGCTTCTGTTGGGAAAAGGATAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     403626 74 -    863181 gct--caaaacctggcatagttgctcaataaatact-ttattgaatagatTGTGAGCTTTTGTTGGGAAAAGGATAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29555666 74 -  71996105 gct--caaaacctggcatagttgctcaataaatact-ttattgaatagatTGTGAGCTTTTGTTGGGAAAAGGATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     238269 74 -    735854 gct--caaaacctggcatagttgctcaataaatact-ttattgaatagatTGTGAGCTTTTGTTGGGAAAAGGATAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     193711 74 -   1829203 gct--caaaacctggcatagttgctcaacaaatact-ttattgaatagatTGTGAGCTTTTGTTGGGAAAAGGATAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30365519 66 + 171630274 GCT--CAAAACCTGGAATAGTTGCTCAATAAATACT-TT--------GATTGTGAGCTTTTCTTGGGAAAAGGATAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           188267 74 +    515838 gct--caaaacctggaatagttgctcaataaatact-ttattgaatagatTGTGAGCTTTTGTTGGAAAAAGGACAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     820778 74 -   1771730 gct--caaaacctggaatagttgctcaataaacact-ttattgaatagatTGTGAGCTTTTGTTGGAAAAAGGATAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     306809 66 -    383796 GCT--CAAAACCTGGAATCGTTGCTCAATAAATACT-TT--------GATTGTGAGCTTTTCTTGGGAAAAGGATAT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           233357 75 +  18854210 GCT--CAAAGCCTAGCATTAATACACAACAAATAATCTTATTGACTAGATTGTGAACTTTTGCTGGGAAAGGGACAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58027187 69 -  94987271 GCTTCCTAACCCTTGTACAGGTGCTAAGTA-----T-GTACTGAATAGAC--AGAGCTTTCGATGGGAAAGGAACAT
i mm10.chr17               C 0 I 3
s dasNov3.JH569887            10903 57 -     22419 GCT--CAAAGCCTGT--------CTCAGTA-----T-TTCTCGACTAGACTGTGAACTGCTG--GGGACCGCCAT--
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               285084 806 + 123392446 I
e proCoq1.NW_012149775v1      90040 77 -   1411461 I
e canFam3.chr35            26284688 1101 +  26524999 I

a score=311298.000000
s hg38.chr6_GL000254v2_alt  1403967 29 +   4827813 GCCTTTTAATGCT--TTGTTCCTTTACT----------GCA---
s panTro5.chr6             30277413 29 + 175400573 GCCTTTTAATGCT--TTGTTCCTTTACT----------GCA---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30507959 29 + 173848474 GCCTTTTAATGCT--TTGTTCCTTTACT----------GCA---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     214827 29 +   2037526 GCCTTTTAATGCT--TTGCTCCTTTACT----------GCA---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74887865 29 + 122973662 GCCTTTTAATGCT--TTGTTCCTTTACT----------GCA---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30761353 28 + 172585720 GCCTTTCAATGCT--TTGTT-CTTTACT----------GCA---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30056496 28 - 170955103 GCCTTTCAATGCT--TTGTT-CTTTACT----------GCA---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     305785 28 +   1495729 GCCTTTCAATGCT--TTGTT-CTTTACT----------GCA---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     403700 28 -    863181 GCCTTTCAATGCT--TTGTT-CTTTACT----------GCA---
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29555740 28 -  71996105 GCCTTTCAATGCT--TTGTT-CTTTACT----------GCA---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     238343 28 -    735854 GCCTTTCAATGCT--TTGTT-CTTTACT----------GCA---
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     193785 28 -   1829203 GCCTTTCAATGCT--TTGTT-CTTTACT----------GCA---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30365585 29 + 171630274 GCCTTGTAATGCT--TTGTTCCTTTACT----------GAA---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           188341 29 +    515838 GCCTTTTAATGCT--GTGTTCCTTTACT----------GAA---
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     820852 29 -   1771730 GCCTTTTAATGCT--GTGTTCCTTTACT----------GAA---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     306875 29 -    383796 GCCTTTTAATGCT--TTGTTCCTTTACT----------GAA---
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               285890 29 + 123392446 GCCTTATAATGCT--TTGTTCCTTTACT----------GCA---
i micMur3.chr6             I 806 I 530
s proCoq1.NW_012149775v1      90117 29 -   1411461 GCCTTTTAATGCT--TTGTTCCTTTACT----------GCA---
i proCoq1.NW_012149775v1   I 77 I 199
s otoGar3.GL873550           233432 12 +  18854210 -------------------ACCTCTAAT----------TCA---
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58027259 22 -  94987271 GCCTTATACTGC---------TTGTGCA----------GGA---
i mm10.chr17               I 3 I 13
s dasNov3.JH569887            10960 44 -     22419 GCCTCGTAAGGCTTGTGGTTCCTTTAGTTTTTAGGATAGTATTA
i dasNov3.JH569887         C 0 C 0
e canFam3.chr35            26284688 1101 +  26524999 I

a score=950686.000000
s hg38.chr6_GL000254v2_alt  1403996  92 +   4827813 -ATTCACAGGGGATGTTGG----CTGTTTTTCAAATT-AAAAACAGAAAACTGAGGAGGGTAG------AATTTCAAGTTCCATTTTCAAAGG----AGAC-ACACAGA
s panTro5.chr6             30277442  92 + 175400573 -ATTCACAGGGGATGTTGG----CTGTTTTTCAAATT-AAAAACAGAAAACTGAGGAGGGTAG------AATTTCAAGTTCCATTTTCAAAGG----AGAC-ACACAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30507988  92 + 173848474 -ATTCACAGGGGATGTTGG----CTGTTTTTCAAATT-AAAAACAGAAAACTGAGGAGGGTAG------AATTTCAAGTTCCATTTTCAAAGG----AGAC-ACACAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     214856  92 +   2037526 -ATTCACAGGGGATGTTGG----CTGTTTTTCAAATT-AAAAACAGAAAACTGAGGATGGTAG------AATTTCAAGTTCCATTTTCAAAGG----AGAC-ACACAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74887894  92 + 122973662 -ATTCACAGGGGATATTGG----CTGTTTTTCAAATT-AAAAAGAGAAAACTGAGAAGGGTAG------AATTTCAAGTTCCATTTTCAAGGG----AGAC-ACACAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30761381  96 + 172585720 -ACTCACAGGGGATGTTGGGTGAGTGTTTTTCAAATT-AAAAAGAGAAAATTGAGAAGGGTAG------AATTTCAAGTTCCATTTTCAAAGG----AGAC-ACACAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30056524  96 - 170955103 -ACTCACAGGGGATGTTGGGTGAGTGTTTTTCAAATT-AAAAAGAGAAAATTGAGAAGGGTAG------AATTTCAAGTTCCATTTTCAAAGG----AGAC-ACACAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     305813  96 +   1495729 -ACTCACAGGGGATGCTGGGTGAGTGTTTTTCAAATT-AAAAAGAGAAAATTGAGAAGGGTAG------AATTTCAAGTTCCATTTTCAAAGG----AGAC-ACACAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     403728  96 -    863181 -ACTCACAGGGGATGTTGGGTGAGTGTTTTTCAAATT-AAAAAGAGAAAATTGAGAAGGGTAG------AATTTCAAGTTCCATTTTCAAAGG----AGAC-ACACAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29555768  96 -  71996105 -ACTCACAGGGGATGTTGGGTGAGTGTTTTTCAAATT-AAAAAGAGAAAATTGAGAAGGGTAG------AATTTCAAGTTCCATTTTCAAAGG----AGAT-ACACAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     238371  96 -    735854 -ACTCACAGGGGATGTTGGGTGAGTGTTTTTCAAATT-AAAAAGAGAAAATTGAGAAGGGTAG------AATTTCAAGTTCCATTTTCAAAGG----AGAT-ACACAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     193813  96 -   1829203 -ACTCACAGGGGATGTTGGGTGAGTGTTTTTCAAATT-AAAAAGAGAAAATTGAGAAGGGTAG------AATTTCAAGTTCCATTTTCAAAGG----AGAC-ACACAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30365614 107 + 171630274 -ATTCACAGGGGATGTTAGCTGAGTGTTTTTCAAATTAAAAAAAAAAAAACTGAGGAGGGCAGAAGGCTAATTTCAAGTTCCATTGACAAAGGACGCAGAC-ACACAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           188370 102 +    515838 -ATTCACAGGGGATGTTGGC----TGTTTTTCAAATT-AAAAAGAGAAAACTGAGAAGGGTGGAAGGCTAATTTCAAGTTCCATTGTCAAAGGAGGCAGAC-ACACAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     820881 102 -   1771730 -ATTCACAGGGGATGTTGGC----TGTTTTTCAAATT-AAAAATAGAAAACTGAGAAGGGTGGAAGGCTAATTTCAAGTTCCATTGTCAAAGGAGGCAGAC-ACACAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     306904 106 -    383796 -ATTCACAGGGAATGTTGGCTGAGTGTTTTTCAAATT-AAAAAGAGAAAACTGAGGAGGGCAGAAGGCTAATTTCAAGTTCCATTGTCAAAGGAGGCAGAC-ACACAGA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           233444  93 +  18854210 -ACTCATGATGGATGTTCTTTAACTGTGTCTCAGAGC--------------TGGGGAGGATGGAGGGCTAATACCAATTTCCACTTTCAAAGTAGACAGAC-ATACAGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58027294  86 -  94987271 -AACCATGATGGATGTCTGAAGAATG----TCAACAT-TTAAAGGGAAA----------GTGG--GGCTAATTTTAATTTCTACCTTGAAAGA----AGAC-AGGTAAA
i mm10.chr17               I 13 I 216
s dasNov3.JH569887            11004  90 -     22419 AGTCCATGGTGATGCTTCACTGAATGTTTGTCAAACT-GAAAAGGGAAA-----GGAGGGCT-------AATTTCAATTTCCATTTTCAAAGG----AGACAACACA--
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               285919 530 + 123392446 I
e proCoq1.NW_012149775v1      90146 199 -   1411461 I
e canFam3.chr35            26284688 1101 +  26524999 I

a score=311155.000000
s hg38.chr6_GL000254v2_alt  1404088  31 +   4827813 -TAAGTGAGAATAAA-------------------------------------------------------------------------AACTGTCTACGACAATC--
s panTro5.chr6             30277534  31 + 175400573 -TAAGTGAGAATAAA-------------------------------------------------------------------------AACTGTCTACAACAATC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30508080  31 + 173848474 -TAAGTGAGAATAAA-------------------------------------------------------------------------AACTGTCTACAACAATC--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     214948  31 +   2037526 -TAAGTGAGAATAAA-------------------------------------------------------------------------AGCTGTCTACGACAATC--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74887986  31 + 122973662 -TAAGTGAGAATAAA-------------------------------------------------------------------------AACTGTCTACGACAATC--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30761477  31 + 172585720 -TAAGTGAGAATAAA-------------------------------------------------------------------------AACTGTCTACGACAATC--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30056620  31 - 170955103 -TAAGTGAGAATAAA-------------------------------------------------------------------------AACTGTCTACGACAATC--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     305909  31 +   1495729 -TAAGTGAGAATAAA-------------------------------------------------------------------------AACTGTCTACGACAATC--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     403824  31 -    863181 -AAAGTGAGAATAAA-------------------------------------------------------------------------AACTGTCTACGACAATC--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29555864  31 -  71996105 -TGAGTGAGAATAAA-------------------------------------------------------------------------AACTGTCTACGACAATC--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     238467  31 -    735854 -TGAGTGAGAATAAA-------------------------------------------------------------------------AACTGTCTACGACAATC--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     193909  31 -   1829203 -TAAGTGAGAATAAA-------------------------------------------------------------------------AACTGTCTACGACAATC--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30365721  31 + 171630274 -TAAGTGAGAATAAA-------------------------------------------------------------------------AACTGCCTATGACAATC--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           188472  31 +    515838 -TAAGTGAGAATAAA-------------------------------------------------------------------------AACTGCCTATGACAATC--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     820983  31 -   1771730 -TAAGTGAGAATAAA-------------------------------------------------------------------------AACTGCCTATGACAATC--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     307010  31 -    383796 -TAAGTGAGAATAAA-------------------------------------------------------------------------AACTGCCTACGACAATC--
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           233537 104 +  18854210 -TAAATGAGAATAAACCTCCTTACtttttttttttttttttttgagacagagcctcaagttgtcccactgagtagagtgccgtagcttcacagctcacagcaacc--
i otoGar3.GL873550         C 0 I 191
s dasNov3.JH569887            11094  31 -     22419 CTGAG-AAGCATCAA-------------------------------------------------------------------------AACTGCTTAC--CAACCTG
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               285919 530 + 123392446 I
e mm10.chr17               58027380 216 -  94987271 I
e proCoq1.NW_012149775v1      90146 199 -   1411461 I
e canFam3.chr35            26284688 1101 +  26524999 I

a score=580584.000000
s hg38.chr6_GL000254v2_alt  1404119 54 +   4827813 AGCTCAACAACACGTCTCCCTTTGTA-----AGACAGAATAACAAGCAATTTCACAGTT
s panTro5.chr6             30277565 54 + 175400573 AGCTCAACAACACGTCTCCCTTTGTA-----AGACAGAATAACAAGCAATTTCACAGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30508111 54 + 173848474 AGCTCAACAACACGTCTCCCTTTGTA-----AGACAGAATAACAAGCAATTTCACAGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     214979 54 +   2037526 AGCTCAACAACACGTCTCCCTTTGTA-----AGACAGAATAACAAGCAATTTCACAGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74888017 58 + 122973662 AGCTCAACAACACGTCTCCCTTTGCAAGAC-AGACAGAATAAGGAGCAATTTCACAGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30761508 54 + 172585720 AGCTCAACAACACATCTCCCTTTGTC-----AGACAGAATAACAAGCAATTTCACAGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30056651 54 - 170955103 ATCTCAACAACACATCTCCCTTTGTC-----AGACAGAATAACAAGCAATTTCACAGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     305940 54 +   1495729 AGCTCAACAACACATCTCCCTTTGTC-----AGACAGAATAACAAGCAATTTCACAGTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     403855 54 -    863181 AGCTCAACAACACATCTCCCTTTGTC-----AGACAGAATAACAAGCAATTTCACAGTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29555895 54 -  71996105 AGCTCAACAACACATCTCCCTTTGTC-----AGACAGAATAACAAGCAATTTCACAGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     238498 54 -    735854 AGCTCAACAACACATCTCCCTTTGTC-----AGACAGAATAACAAGCAATTTCACAGTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     193940 54 -   1829203 AGCTCAATAACACATCTCCCTTTGTC-----AGACAGAATAACAAGCAATTTCACAGTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30365752 59 + 171630274 AGCTCAACAACACATCTCCCTTTGTAAGACAAGACAAAATAACAAGCCATTTCACAGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           188503 58 +    515838 AGCTCAACAACACATCTCCCTTTGTAAGAC-AGACAAAATACCAAGCAATTTCACAGTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     821014 58 -   1771730 AGCTCAACAGCACATCTCCCTTTGTAAGAC-GGACAAAATAACAAGCAATTTCACAGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     307041 58 -    383796 AGCTCAATAACACATCTCCCTTTGTAAGAC-AGACAAAATAACAAGCAATTTCACAGTT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           233832 55 +  18854210 agccAAACAACAAATCT---TTTGTAAGAC-AGTCAAAATGACACCCAGTTTCGTGGTT
i otoGar3.GL873550         I 191 C 0
s dasNov3.JH569887            11125 55 -     22419 GGCTCAGCAGTAGACTTCCCTTAGTAAGAC-AGAGAAAATGACACGCAGGTAAGTG---
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               285919 530 + 123392446 I
e mm10.chr17               58027380 216 -  94987271 I
e proCoq1.NW_012149775v1      90146 199 -   1411461 I
e canFam3.chr35            26284688 1101 +  26524999 I

a score=140868.000000
s hg38.chr6_GL000254v2_alt  1404173 12 +   4827813 AAG-----TGATAGGGC
s panTro5.chr6             30277619 12 + 175400573 AAG-----TGATAGGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30508165 12 + 173848474 AAG-----TGATAGGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     215033 12 +   2037526 AAG-----TGATAGGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74888075 12 + 122973662 AGG-----TGATAGGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30761562 12 + 172585720 AAG-----TGATAGGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30056705 12 - 170955103 AAG-----TGATAGGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     305994 12 +   1495729 AAG-----TGATAGGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     403909 12 -    863181 AAG-----TGATAGGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29555949 12 -  71996105 AAA-----TGATAGGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     238552 12 -    735854 AAG-----TGATAGGGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     193994 12 -   1829203 AAG-----TGATAGGGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30365811 12 + 171630274 AAG-----TGATAGGCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           188561 12 +    515838 AAG-----TGATAGGTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     821072 12 -   1771730 AAG-----TGATAGGCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     307099 12 -    383796 AAG-----TGATAGGCC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           233887 17 +  18854210 AAGTAAAATGATGGAGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58027596 12 -  94987271 aag-----tgctgggat
i mm10.chr17               I 216 I 21
s dasNov3.JH569887            11180 12 -     22419 AAA-----TCACAGAGC
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               285919 530 + 123392446 I
e proCoq1.NW_012149775v1      90146 199 -   1411461 I
e canFam3.chr35            26284688 1101 +  26524999 I

a score=830029.000000
s hg38.chr6_GL000254v2_alt  1404185 59 +   4827813 TTGTCACTCTTCAGCAGTTTGCT--GAG---TTTTAACCCTTTCACTATGGCGTTCTCTC-CATT
s panTro5.chr6             30277631 59 + 175400573 TTGTCACTCTTCAGCAGTTTGCT--GAG---TTTTAACCCTTTCACTATGGCGTTCTCTC-CATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30508177 59 + 173848474 TTGTCACTCTTCAGCAGTTTGCT--GAG---TTTTAACCCTTTCACTATGGGGTTCTCTC-CATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     215045 59 +   2037526 TTGTCACTCTTCAGCAGTTTGCT--GAG---TTTTAACCCTTTCACTATGGCGTTCTCTC-CATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74888087 59 + 122973662 TTGTCACTCTTCAGCAGTTTGCT--GAG---TTTCAACCCTTTCACTATGGTGTTCTCTC-CATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30761574 59 + 172585720 TTGTCACTCTTCAGCAGTTTGCT--GAG---TTTTAACCCTTTAACTATGGTGTTCTCTC-CATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30056717 59 - 170955103 TTGTCACTCTTCAGCAGTTTGCT--GAG---TTTTAACCCTTTAACTATGGTGTTCTCTC-CATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     306006 59 +   1495729 TTGTCACTCTTCAGCAGTCTGCT--GAG---TTTTAACCCTTTAACTATGGTGTTCTCTC-CATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     403921 59 -    863181 TTGTCACTCTTCAGCAGTTTGCT--GAG---TTTTAACCCTTTAACTATGGTGTTCTCTC-CATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29555961 59 -  71996105 TTGTCACTCTTCAGCAGTTTGCT--GAG---TTTTAACCCTTTAACTATGGTGTTCTCTC-CATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     238564 59 -    735854 TTGTCACTCTTCAGCAGTTTGCT--GAG---TTTTAACCCTTTAACTATGGTGTTCTCTC-CATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     194006 59 -   1829203 TTGTCACTCTTCAGCAGTTTGCT--GAG---TTTTAACCCTTTAACTATGGTGTTCTCTC-CATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30365823 53 + 171630274 TTGTCATTCTTCAGCAGT---TT--GAG---TTTTAACCCTTTCGCTATGGTGTTCTCTC-C---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           188573 59 +    515838 TTGTCACTCTTCAGCAGTTTGTT--GAG---TTTTAACCCTTTCACTATTGTGTTCTCTC-CATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     821084 59 -   1771730 TTGTCACTCTTCAGCAGTTGGTT--GAG---TTTTAACCCTTTCACTATGGTGTTCTTTC-CGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     307111 59 -    383796 TTGTCACTCTTCAGCAGTTTGTT--GAG---TTTTAACTCTTTCACTCCGGTGTTCTCTC-CACT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               286449 61 + 123392446 TTGTCACTCTTCCACAGCTTGCTGAGAG---TTTTTACCCCTTCACTATGGTGATCTCTC-CATT
i micMur3.chr6             I 530 C 0
s proCoq1.NW_012149775v1      90345 61 -   1411461 TTGTCACTCTTCCACAGCTTGCTGAGAG---TTTTTACCCCTTCACTATGGTGTTCTCTC-CATT
i proCoq1.NW_012149775v1   I 199 I 2
s otoGar3.GL873550           233904 61 +  18854210 TTGTCACTCTTCAACAGATTACTTAGAG---TTTTTACCTCTTCAATATGGTGTTCTCTC-CGTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58027629 63 -  94987271 ctggcCCTCCTGAGCATCTTGCT--GAGGGTTTGTAACTACTTTTCCATGGCTTAATCTCACACT
i mm10.chr17               I 21 I 1
s dasNov3.JH569887            11192 41 -     22419 ATGCTACTCTTTGGCAGCTTATT--AAG---TTTTG------------------TGTCTC-CATT
i dasNov3.JH569887         C 0 C 0
e canFam3.chr35            26284688 1101 +  26524999 I

a score=433990.000000
s hg38.chr6_GL000254v2_alt  1404244 37 +   4827813 ATTACAGA-------------------GAAAGGCAGATGGGAGCCTCTCCCAGCGA
s panTro5.chr6             30277690 37 + 175400573 ATTACAGA-------------------GAAAGGCAGATGGGAGCCTCTCCCAGCGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30508236 37 + 173848474 ATTACAGA-------------------GAAAGGCAGATGGGAGCCTCTCCCAGCGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     215104 37 +   2037526 ATTACAAA-------------------GAAAGGCAGATGGGAGCTTCTCCCAGCGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74888146 37 + 122973662 ATTAAAGA-------------------GAAAGGCAGATGGGAGCCTCTCCCAGTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30761633 37 + 172585720 ATCACAGA-------------------GAAAGGCAGATGGGAGCCTCTCCCAGCGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30056776 37 - 170955103 ATCACAGA-------------------GAAAGGCAGATGGGAGCCTCTCCCAGCGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     306065 37 +   1495729 ATCACAGA-------------------GAAAGGCAGATGGGAGCCTCTCCCAGCGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     403980 37 -    863181 ATCACAGA-------------------GAAAGGCAGATGGGAGCCTCTCCCAGCGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29556020 37 -  71996105 ATCACAGA-------------------GAAAGGCAGATGGGAGCCTCTCCCAGCGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     238623 37 -    735854 ATCACAGA-------------------GAAAGGCAGATGGGAGCCTCTCCCAGCGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     194065 37 -   1829203 ATTACAGA-------------------GAAAGGCAGATGGGAGCCTCTCCCAGCGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30365876 36 + 171630274 ATTACAGA-------------------GAAAGGCAGATGGGAGCCTCTTCCAACG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           188632 36 +    515838 ATTACAGA-------------------GAAAGGCAGATGGGAGCCTCTTCCAGCG-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     821143 36 -   1771730 ATTACAGA-------------------GAAAGGCAGATGGGGGCCTCTTCCAATG-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     307170 36 -    383796 ATTACAGA-------------------GAAAGGCAGATGGGAGCCTCTTTCAACG-
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               286510 36 + 123392446 GCTGTAGA-------------------CAAAGGCAGATGGGAGCCTCTCCCAAGG-
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           233965 36 +  18854210 ATTGTAAA-------------------GAAAGGTAGACGGGAGCCTCTCAGATGG-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58027693 35 -  94987271 ACTGCACA-------------------GAAAGACAGACGAGGGTCTCTTCTATG--
i mm10.chr17               I 1 C 0
s dasNov3.JH569887            11233 41 -     22419 ATTGCAAATAATAATGACAACAATAATAAAAGGCAGAAAGG---------------
i dasNov3.JH569887         C 0 C 0
e proCoq1.NW_012149775v1      90406  2 -   1411461 I
e canFam3.chr35            26284688 1101 +  26524999 I

a score=509545.000000
s hg38.chr6_GL000254v2_alt  1404281 34 +   4827813 AAAGACTACA-GCTTGTGTCCTTCATAGGAGAAAA
s panTro5.chr6             30277727 34 + 175400573 AAAGACTACA-GCTTGTGTCCTTCACAGGAGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30508273 34 + 173848474 AAAGACTACA-GCTTGTGTCCTTCACAGGAGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     215141 34 +   2037526 AAAGACTACA-GCTTGTGTCCTTCACAGGAGAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74888183 34 + 122973662 AAAGACTACA-GCTTGTGTCCTTCACAGGAGAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30761670 34 + 172585720 AAAGACTACA-GCTTGTGTCCTTCACAGGACAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30056813 34 - 170955103 AAAGACTACA-GCTTGTGTCCTTCACAGGACAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     306102 34 +   1495729 AAAGACTACA-GCTTGTGTCCTTCACAGGACAAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     404017 34 -    863181 AAAGACTACA-GCTTGTGTCCTTCACAGGACAAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29556057 34 -  71996105 AAAGACTACA-GCTTGTGTCCTTCACAGGACAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     238660 34 -    735854 AAAGACTACA-GCTTGTGTCCTTCACAGGACAAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     194102 34 -   1829203 AAAGACTACA-GCTTGTGTCCTTCACAGGACAAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30365912 34 + 171630274 AAAGACTACA-GCTTCTGTCCTTCACAAGAGAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           188668 34 +    515838 AAAGACTACA-GCTTCTGTCCTTCACAGGAGAAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     821179 34 -   1771730 AAAGACTACA-GCTTCTGTCCTTCACAGGAGAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     307206 34 -    383796 AAAGACTACA-GCTTCTGTCCTTCACAAGACAAAA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               286546 34 + 123392446 AAAGACCACA-GCTTGTGTCCTTCAGAGAAGAAAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      90408 34 -   1411461 AAAGACCACA-GCTTGTGTCCTTCAGAGAAGAAAA
i proCoq1.NW_012149775v1   I 2 I 49
s otoGar3.GL873550           234001 35 +  18854210 AAATACCACAGGCTTGTGTCCTTCAGAGAAGAAAA
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58027728 26 -  94987271 AAAGAGTACA-GTTTATGTCCTTTAGA--------
i mm10.chr17               C 0 C 0
s dasNov3.JH569887            11274 31 -     22419 AAAGACGGCA-TTTTGT---CTCCATATTATAAAA
i dasNov3.JH569887         C 0 C 0
e canFam3.chr35            26284688 1101 +  26524999 I

a score=134895.000000
s hg38.chr6_GL000254v2_alt  1404315 11 +   4827813 CAGTGATGGCT
s panTro5.chr6             30277761 11 + 175400573 cagtgatggct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30508307 11 + 173848474 cagtgatggct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     215175 11 +   2037526 CAGTGATGGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74888217 11 + 122973662 TAGTGATGGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30761704 11 + 172585720 TAGTGATGGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30056847 11 - 170955103 TAGTGATGGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     306136 11 +   1495729 TAGTGATGGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     404051 11 -    863181 CAGTGATGGCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29556091 11 -  71996105 TAGTGATGGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     238694 11 -    735854 TAGTGATGGCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     194136 11 -   1829203 TAGTGATGGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30365946 11 + 171630274 TAGTGATGGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           188702 11 +    515838 TAGCGGTGGTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     821213 11 -   1771730 TAGTGATGGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     307240 11 -    383796 TAGTGATGGCT
i aotNan1.NW_018496904v1   C 0 I 958
s micMur3.chr6               286580 11 + 123392446 TAATGATGGCT
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           234037  8 +  18854210 CAGTGATG---
i otoGar3.GL873550         I 1 C 0
s dasNov3.JH569887            11305 11 -     22419 TAGTGACAGCT
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58027754  0 -  94987271 C
e proCoq1.NW_012149775v1      90442 49 -   1411461 I
e canFam3.chr35            26284688 1101 +  26524999 I

a score=11504.000000
s hg38.chr6_GL000254v2_alt  1404326 1 +   4827813 C
s panTro5.chr6             30277772 1 + 175400573 c
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30508318 1 + 173848474 c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     215186 1 +   2037526 C
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74888228 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30761715 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30056858 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     306147 1 +   1495729 C
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     404062 1 -    863181 C
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29556102 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     238705 1 -    735854 C
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     194147 1 -   1829203 C
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30365957 1 + 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           188713 1 +    515838 C
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     821224 1 -   1771730 C
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               286591 1 + 123392446 C
i micMur3.chr6             C 0 I 35
s dasNov3.JH569887            11316 1 -     22419 C
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58027754 0 -  94987271 C
e proCoq1.NW_012149775v1      90442 49 -   1411461 I
e canFam3.chr35            26284688 1101 +  26524999 I
e otoGar3.GL873550           234045 0 +  18854210 C
e aotNan1.NW_018496904v1     307251 958 -    383796 I

a score=186826.000000
s hg38.chr6_GL000254v2_alt  1404327 26 +   4827813 CAGAACTTTTATATG-AATGAACTTAG
s panTro5.chr6             30277773 26 + 175400573 cagaacttttatatg-aaggaacttag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30508319 26 + 173848474 cagaacttttatatg-aaggaacttag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     215187 26 +   2037526 CAGAACTTTCATATG-AAGGAACTCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74888229 16 + 122973662 CAGAACTTTTATATG-A----------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30761716 26 + 172585720 CAGAACTTTCATATG-AAGGAACTTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30056859 26 - 170955103 CAGAACTTTCATATG-AAGGAACTTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     306148 26 +   1495729 CAGAACTTTCATATG-AAGGAACTTAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     404063 26 -    863181 CAGAGCTTTCATATG-AAGGAACTTAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29556103 26 -  71996105 CAGAACTTTCATATG-AAGGAACTTAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     238706 26 -    735854 CAGAACTTTCATATG-AAGGAACTTAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     194148 26 -   1829203 CAGAACTTTCATATG-AAGGAACTTAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30365958 22 + 171630274 ----AATTATTCACA-AGTGATCTTAG
i calJac3.chr4             C 0 I 864
s saiBol1.JH378341           188714 26 +    515838 CAGAACTTGTATATG-AAAGAACTTAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     821225 26 -   1771730 CAGAACTTTTAAATG-AAAGTCCTTAG
i cebCap1.NW_016107755v1   C 0 C 0
s mm10.chr17               58027754 16 -  94987271 ----------ATGTG-ACCAGGCTTAG
i mm10.chr17               C 0 C 0
s dasNov3.JH569887            11317 27 -     22419 CAGAACATCTATCTATATGGAATTTAC
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               286592 35 + 123392446 I
e proCoq1.NW_012149775v1      90442 49 -   1411461 I
e canFam3.chr35            26284688 1101 +  26524999 I
e otoGar3.GL873550           234045  0 +  18854210 C
e aotNan1.NW_018496904v1     307251 958 -    383796 I

a score=397650.000000
s hg38.chr6_GL000254v2_alt  1404353 51 +   4827813 CACAGCTATC-AGAGTGGATGGTGGTGGGAGGGCTAGCAGGAAACTAGTAAA
s panTro5.chr6             30277799 51 + 175400573 cacagctatc-agagtggatggtggtgggagggctagCAGGAAACTAGTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30508345 51 + 173848474 cacagctatc-agagtggatggtggtgggagggctagCAGGAAACTAGTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     215213 51 +   2037526 CACAGCTATC-AGAGTGGATGGTGGTGGGAGGGCTAGCAGGAAACTAGTAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74888245 48 + 122973662 ---GGCTATC-AGAGTGGGTGGTGGTGGGAGGGCTAGCAGGAAACTGGTAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30761742 51 + 172585720 CACAGCTATC-AGAGTGGGTGGTGGTGGGAGGACTAGCATGAAACTAGTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30056885 51 - 170955103 CACAGCTATC-AGAGTGGGTGGTGGTGGGAGGACTAGCATGAAACTAGTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     306174 51 +   1495729 CACAGCTATC-AGAGTGGGTGGTGGTGGGAGGACTAGCATGAAACTAGTAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     404089 51 -    863181 CACAGCTATC-AGAGTGGGTGGTGGTGGGAGGACTAGCAAGAAACTAGTAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29556129 51 -  71996105 CACAGCTATC-AGGGTGGGTGGTGGTGGGAGGACTAGCAGGAAACTAGTAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     238732 51 -    735854 CACAGCTATC-AGAGTGGGTGGTGGTGGGAGGACTAGCAGGAAACTAGTAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     194174 51 -   1829203 CACAGCTATC-AGAGTGGGTGGTGGTGGGAGGACTAGCAGGAAACTAGTAAA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           188740 51 +    515838 CACTGCTATC-AGAGTGGGTGATGATGGGAGGCCTAGAAGGAAACTAGGAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     821251 51 -   1771730 TACAGCTATC-AGAGTGGGTGATGATGGGAGGCCTAGAAGGAAACCAGGAAA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           234045 39 +  18854210 ----GCTATC-A--GCAGATGGTACTGAGAGGGCTGGAAGGAAACG------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58027770 45 -  94987271 CATGGTAATC-AGGTTGGCTTG---CTGGAGGGCTGA---GACACTATCGTC
i mm10.chr17               C 0 C 0
s dasNov3.JH569887            11344 40 -     22419 CAGAACAATCTAGGCAGGGTGGAATAGGGAACGCTGGAAA------------
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               286592 35 + 123392446 I
e proCoq1.NW_012149775v1      90442 49 -   1411461 I
e canFam3.chr35            26284688 1101 +  26524999 I
e aotNan1.NW_018496904v1     307251 958 -    383796 I
e calJac3.chr4             30365980 864 + 171630274 I

a score=1598289.000000
s hg38.chr6_GL000254v2_alt  1404404 144 +   4827813 CAACTACAAGCTG---CCCCTTCAGGGAAAGTTTCTACTTGGAATATAAGTTACAGATTAATGAAAATAG-AAAGATTTCCCAAAGATAC-TTATTCTCATGTTTTATAAAAGATCAGGGAAATGTCAGCTGTCCACTTAACGGATGAC
s panTro5.chr6             30277850 144 + 175400573 CAACTACAAGCTG---CCCCTTCAGGGAAAGTTTCTACTTGGAATATAAGTTACAGATTAATGAAAATAG-AAAGATTTCCCAAAGATAC-TTATTCTCATGTTTTATAAAAGATCAGGGAAATGTCAGCTGTCCACTTAACGGATGAC
i panTro5.chr6             C 0 I 1
s panPan2.chr6             30508396 144 + 173848474 CAACTACAAGCTG---CCCCTTCAGGGAAAGTTTCTACTTGGAATATAAGTTACAGATTAATGAAAATAG-AAAGATTTCCCAAAGATAC-TTATTCTCATGTTTTATAAAAGATCAGGGAAATGTCAGCTGTCCACTTAACGGATGAC
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01015528v1     215264 144 +   2037526 CAACTACAAGCTG---CCCCTTCAGGGAAAGTTTCTACTTGGAATATAAGTTACAGATTAATGAAAATAG-AAAGATTTCCCAAAGATAC-TTATTCTCATGTTTTATAAAAGATCAGGGAAATGTCAGCTGTCCACTTAACGGATGAC
i gorGor5.CYUI01015528v1   C 0 I 1
s nomLeu3.chr1a            74888293 144 + 122973662 CAACTACAAGCTG---CCCCTTCAGGGAAAGTTTCTACTTCGAATATAAGTTACAGATTAATGAAAATAG-AAAGATTTCCCAAAGATAC-TTATTCTCATGTTTTATAAAAGATCAGGGAAATGTCAGCTGTCCACTTAACGGATGAC
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             30761793 144 + 172585720 CAACGACAAGCTG---CCCCTTCAGGGAAAGTTTCTACTTCGAATATAAGTTACAGAGTAACGAAAATAG-CAAGATTTCCGAAAGAAAC-TTATTCCCATGTTTTATAAAAGATCAGGGAAATGTCAGCTGTCCACTTAATGGATGAC
i rheMac8.chr4             C 0 I 2
s macFas5.chr4             30056936 144 - 170955103 CAACGACAAGCTG---CCCCTTCAGGGAAAGTTTCTACTTCGAATATAAGTTACAGAGTAACGAAAATAG-CAAGATTTCCGAAAGAAAC-TTATTCCCATGTTTTATAAAAGATCAGGGAAATGTCAGCTGTCCACTTAATGGATGAC
i macFas5.chr4             C 0 I 2
s macNem1.NW_012012100v1     306225 143 +   1495729 CAACGACAAGCTG---CCCCTTCAGGGAAAGTTTCTACTTCGAATATAAGTTACAGAGTAACGAAAATAG-CAAGATTTCCGAAAGAAAC-TTATTCCCATGTTTTATAAAAGATCA-GGAAATGTCAGCTGTCCACTTAATGGATGAC
i macNem1.NW_012012100v1   C 0 I 2
s cerAty1.NW_012002535v1     404140 144 -    863181 CAACAACAAGCTG---CCCCTTCAGGAAAAGTTTCTACTTCGAATATAAGTTACAGAGTAATGAAAATAG-CAAGATTTCCGAAAGAAAC-TTAATCCCATGTTTTATAAAAGAAAAGGGAAATGTCAGCGGTCCACTTAATGGATAAC
i cerAty1.NW_012002535v1   C 0 I 2
s chlSab2.chr17            29556180 144 -  71996105 CAACTACAAGCTG---CCCCTTCAGGGAAAGTCTCTACTTCGAATATAAGTTACAGAGTAATGAAAATAG-CAAGATTTCCGAAAGAAAC-TTATTCCCATGTTTTATAAAAGATCACGGAAATGTCAGCTGTCCACTTAATGGATGAC
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012107142v1     238783 144 -    735854 CAATTACAACCTG---CCCCTTCAGGGAAAGTCTCTACTTCGAATATAAGTTACAGAGTAATGAAAATAG-CAAGATTTCCGAAAGAAAC-TTATTCCCATGTTTTATAAAAGATCAGGGAAATCTCAGCTGTCCACTTAATGGATGAC
i manLeu1.NW_012107142v1   C 0 I 2
s colAng1.NW_012115577v1     194225 144 -   1829203 CAACTACAAGCTG---CCCTTTCAGGGAAAGTTTCTACTTCGAATATAAGTTACAGAGTAATGAAAATAG-CAAGATTTCCCAAAGAAAC-TTATTCCCATGTTTTATAAAAGATCAGGGAAATGTCAGCTGTCCACTTAACGGATGAC
i colAng1.NW_012115577v1   C 0 I 1
s saiBol1.JH378341           188791 142 +    515838 CAACTACAAGCTG---CCCCTTCAGGGAAAGTTTCTACTTAGAATATAAGTTAAAGATTAATGAAAATAG-CAACATTTTCCAAAGACAC---ATTCTCATGTTTTATAAAAGATCAGGGAAATGTCAGCTGTCCACTTAACGGATGAC
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     821302 142 -   1771730 CAACTACAAGCTG---CCCCTTCAGGGAAAGTTTCTACTTAGAATATAAGTTAAAGATTAATGAAAATAG-CAAGATTTTCCAAAGACAC---ATTCTCATGTTTTATAAAAGATCAGGGAAATGTCAACTGTCCACTTAACGGATGAC
i cebCap1.NW_016107755v1   C 0 I 1
s micMur3.chr6               286627 144 + 123392446 CAACTAGAAGCTC---CCCCTTCAGAACAAGTTTCTACTTAGATTGTAGGTGACAGATGAATGAAAACAG-CAAGATTTTCTAAAGATAC-TTATCTTCATGTTTTATAAAAGATTAGGGAAATGTCAACTGCTCAGTTAATGGATGAC
i micMur3.chr6             I 35 I 70
s proCoq1.NW_012149775v1      90491 144 -   1411461 CAACTAGAAGCTC---CCCCTTCAGCACAAGTTTCTACTTAGATTGTAGGTCACAGATGAATGAAAATAG-CAAGATTTTCTAAAGATAT-TTATCTTCATGTTTTATAAAAGATTAGGGAAATGTCAACCGTTCAGTTAATGGATGAC
i proCoq1.NW_012149775v1   I 49 I 70
s otoGar3.GL873550           234084 145 +  18854210 CAACTAGAAGCTG---CCCCATTAGGACAAATTTCTACTTAGATTTTAAATCACAGATGAATGAAAATCGCCAAGATTTTCTAAAGATAT-TTATCTTAATGTTTTCTAAAAGATTAGGGAAATGTCAACTGCCCAGTTAACGGATGAC
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58027815 102 -  94987271 -------AAACTGGTACTTCTTTAGCACACGTTT-TCCTTACTTTGTAGGCCTCAGGTGAATG-AAACGA-CACGATTTT------ATAT-TTACCCT------------------------------ATTGCTCACTTACTGGGTGGC
i mm10.chr17               C 0 I 13
s dasNov3.JH569887            11384 132 -     22419 ----------------CCCTTTTAGCACAAGTTTCTACACAGATTATATACTACATATGAACGAAAATAC-CAAGCTTTCCTACACACATACTGTCCTCCTGTTTTATAAAAGAGTAGGGAAAAGTCGAATGTCCGTCTAATGGATGAC
i dasNov3.JH569887         C 0 I 1
e canFam3.chr35            26284688 1101 +  26524999 I
e aotNan1.NW_018496904v1     307251 958 -    383796 I
e calJac3.chr4             30365980 864 + 171630274 I

a score=421718.000000
s hg38.chr6_GL000254v2_alt  1404548 50 +   4827813 ATAATGAATTAAG----------------AGTTCGATAGGCGGCAGGCA------------CAACTAAAAGCCAAACT
s panTro5.chr6             30277995 50 + 175400573 ATAATGAATTAAG----------------AGTTCGATAGGCGGCAGGCA------------CAACTAAAAGCCAAACT
i panTro5.chr6             I 1 C 0
s panPan2.chr6             30508541 50 + 173848474 ATAATGAATTAAG----------------AGTTCGATAGGCGGCAGGCA------------CAACTAAAAGCCAAACT
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01015528v1     215409 50 +   2037526 ATAATGAATTAAG----------------AGTTCGATAGGCGGCAGGCA------------CAACTAAAAGCCAAACT
i gorGor5.CYUI01015528v1   I 1 C 0
s nomLeu3.chr1a            74888438 50 + 122973662 ATAATGAATTAAG----------------AGTTCGACAGGCGGCAGGCA------------CAACTAAAAGCCAAAGT
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30761939 50 + 172585720 ATAATGAATTAAG----------------AGTTCGATAAGCGGCAGGCA------------CAACTAAAAGCCAAACT
i rheMac8.chr4             I 2 C 0
s macFas5.chr4             30057082 50 - 170955103 ATAATGAATTAAG----------------AGTTCGATAAGCGGCAGGCA------------CAACTAAAAGCCAAACT
i macFas5.chr4             I 2 C 0
s macNem1.NW_012012100v1     306370 50 +   1495729 ATAATGAATTAAG----------------AGTTCGATAAGCGGCAGGCA------------CAACTAAAAGCCAAACT
i macNem1.NW_012012100v1   I 2 C 0
s cerAty1.NW_012002535v1     404286 50 -    863181 ATAATGAATTAAG----------------AGTTCGATAAGCGGCAGGCA------------CAACTAAAAGCCAAACT
i cerAty1.NW_012002535v1   I 2 C 0
s chlSab2.chr17            29556326 50 -  71996105 ATAATGAATTAAG----------------AGTTCAATAAGCGGCAGGCA------------CAACTAAAAGCCAAACT
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012107142v1     238929 50 -    735854 ATAATGAATTAAG----------------AGTTCGATAAGCGGCAGGCA------------CAACTGAAAGCCAAACT
i manLeu1.NW_012107142v1   I 2 C 0
s colAng1.NW_012115577v1     194370 50 -   1829203 ACAATGAATTAAG----------------AGTTCGATAAGCGGCAGGCA------------CAACTAAAAGCCAAACT
i colAng1.NW_012115577v1   I 1 C 0
s saiBol1.JH378341           188934 50 +    515838 ATAATGATTTAAG----------------AGTTCGACAGGTGGCAGGCA------------CAACTAAAAGCCAAACT
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     821445 50 -   1771730 ATAATGATTTAAG----------------AGTTCGATAGCTGGCAGGCA------------CAACTAAAAGCCAAACG
i cebCap1.NW_016107755v1   I 1 C 0
s otoGar3.GL873550           234230 61 +  18854210 ACGATGATTT-AG----------------AGTCAAAAAGATAGGAGGTAGAAGGTGGTCTGCAACTACAAGTCGAACT
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58027930 51 -  94987271 CGAGTGAATGGGA----------------GCTTAGGGAAGTGGAAGATG-------GTCTGCAAGCGAAAGCCA----
i mm10.chr17               I 13 C 0
s dasNov3.JH569887            11517 74 -     22419 ATGATTTATTTAGAGTTGATTGGGCAGGAAGTTAAAGAGGCGGCGGAGA----GCCGTCCTCATCTGAAAGCCAATCT
i dasNov3.JH569887         I 1 C 0
e micMur3.chr6               286771 70 + 123392446 I
e proCoq1.NW_012149775v1      90635 70 -   1411461 I
e canFam3.chr35            26284688 1101 +  26524999 I
e aotNan1.NW_018496904v1     307251 958 -    383796 I
e calJac3.chr4             30365980 864 + 171630274 I

a score=1566226.000000
s hg38.chr6_GL000254v2_alt  1404598 141 +   4827813 CGACCTAAGTCTTA-TGAAATCCTACTTAATGA--GCTTTCTTGACTACT-GCTAGCCTCACTTATCTGGCAGGAGTCGAAGGAG-AG-GAAGCCCCAAGCTCCTCTGTTCCACCACCTCCAAAGT-----------CCTGAACCCCTTCTCAAGTGT-
s panTro5.chr6             30278045 141 + 175400573 CGACCTAAGTCTTA-TGAAATCCCACTTAATGA--GCTTTCTTGACTACT-GCTAGCCTCACTTATCTGGCAGGAGTCGAAGGAG-AG-GCAGCCCCAAGCTCTTCTGTTCCACCACCTCCAAAGT-----------CCTGAACCCCTTCTCAAGTGT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30508591 141 + 173848474 CGACCTAAGTCTTA-TGAAATCCTACTTAATGA--GCTTTCTTGACTACT-GCTAGCCTCACTTATCTGGCAGGAGTCGAAGGAG-AG-GCAGCCCCAAGCTCTTCTGTTCCACCACCTCCAAAGT-----------CCTGAACCCCTTCTCAAGTCT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     215459 141 +   2037526 CGACCTAAGTCTTA-TGAAATCCTACTTAATGA--GCTTTCTTGACTACT-GCTAGCCTCACTTATCTGGCAGGAGTCGAAGGAG-AG-GAAGCCCCAAGCTCTTCTGTTCCACCACCTCCAAAGT-----------CCTGAGCCCCTTCTCAAGTGT-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74888488 141 + 122973662 CGACCTAAGTCTTA-TGAAATCCTGCTTAATGA--GCTTTCTTGACTACT-GCTAGCCTCACTTATCTGGCAGGAGTCGAAGGAG-GG-GAAGCCCCAAGCTCTTCTGTTCCACCACCTCCAAAGT-----------CTTGAGCCCCTTCTCAAGTGT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30761989 140 + 172585720 CGACCTAAGTCTTA-TGAAATCCTACTTAATGA--GCT-TCTTGACTACT-GCTAGCCTCACTTATCTGGCAGGAGTCGAAGGAG-GG-GAAGCCCCAAGCTCTTCTGTTCTACCACCTCCAAAGT-----------CCTGAGCCCCTTCTCAAGTGT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30057132 140 - 170955103 CGACCTAAGTCTTA-TGAAATCCTACTTAATGA--GCT-TCTTGACTACT-GCTAGCCTCACTTATCTGGCAGGAGTCGAAGGAG-GG-GAAGCCCCAAGATCTTCTGTTCTACCACCTCCAAAGT-----------CCTGAGCCCCTTCTTAAGTGT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     306420 140 +   1495729 CGACCTAAGTCTTA-TTAAATCCTACTTAATGA--GCT-TCTTGACTACT-GCTAGCCTCACTTATCTGGCAGGAGTCGAAGGAG-GG-GAAGCCCCAAGCTCTTCTGTTCTACCACCTCCAAAGT-----------CCTGAGCCCCTTCTCAAGTGT-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     404336 140 -    863181 CGACCTAAGTCTTA-TGAAATTCTACTTAATGA--GCT-TCTTGACTACT-GCTAGCCTCACTTATCTGGCAGGAGTCGAAGGAG-GG-GAAGCCCCAAGCTCTTCTGTTCTACCACCTCCAAAGT-----------CCTGAGCCCCTTCTCAAGTGT-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29556376 140 -  71996105 CGACCTAAGTCTTA-TGAAATCCTACTTAATGA--GCT-TCTTGACTACT-GCTAGCCTCACTTATCTGGCAGCAGTCGAAGGAG-GG-GAAGCCGCAAGCTCTTCTGTTCCACCACCTCCAAAGT-----------ATTGAGCCCCTTCTCAAGTGT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     238979 140 -    735854 CGACCTAAATCTTA-TGAAATCCTACTTAATGA--GCT-TCTTGACTACT-GCTAGCTTCACTTATCTGGCAGGAGTCGAAGGAG-GG-GAAGCCCCAAGCTCTTCTGTTCCACCACCTCCAAAGT-----------CTTGAGCCCCTTCTCAAGTGT-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     194420 141 -   1829203 CGACCTAAGTCTTA-TGAAATCCTACTTAATGA--GCTCTCTTGACTACT-GCTAGCCTCACTTATCTGGCAGGAGTCGAAGGAG-GG-GAAGCCCCAAGCTCTTCTGTTCCACCACCTCAAAAGT-----------CCTGAGCCCCTTCTCAAGTGT-
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           188984 140 +    515838 CGACCTAAGTCTTA-TGAAATCCTATTTAATGA--GCTCCCTGGACTACT-GCTAGCCTCACTTATCCAGCAGGAGTCCAAGGAG-GG-GAAGTCCCAAGCTTTTCTGTTCCACCACCTCCAAAGT-----------CCTGAGCCCCTTCTC-AGTGT-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     821495 141 -   1771730 CGACCTAAGTCTTA-TGAAATCCTATTTAATGA--GCTCCCTGGACTACT-GCCAGCCTCATTTATCCAGCAGGAGTCCAAGGAG-GG-GAAGTCCCAAGCTTTTCTGCTCCACCACCCCCAAAGT-----------CCTGAGCCCCTTCTCAAGTGT-
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               286841 142 + 123392446 CGACCTAAGTCTTA-TGAAGTCCTACCTAAGAA--GTTCCCTTGACTACT-GTGAGCATCCCACTTATGGCAGGAGCTGAAGGAGTGG-GGAGCCCCAAGCTCCTCTGTTCCACTACCTCCAAAGT-----------CCTGCGCCCTTTCCCAAGTGT-
i micMur3.chr6             I 70 I 489
s proCoq1.NW_012149775v1      90705 141 -   1411461 CGACCTAAGTCTTA-TGAAGTCCTACCTAAGGA--GTTCCCTTGACAACT-GTGAGCATCCCTCATATGGCAGAAGCTGAAGGAGTGG-GGAGCCCCAAGCTCCTCTGTTCCACTACCTCCAAAGT-----------CCTGGGTCCCTTCCCAAGTG--
i proCoq1.NW_012149775v1   I 70 C 0
s otoGar3.GL873550           234291 141 +  18854210 TGA-CTAAGTCTTA-TGAAATCCTACCTAAGGA--GTTCCTTTGACTACT-GCTAGCCTCCCTCATTTGACAGCTGCTAAAGGAGGCG-AGAACCCAGAGCTCCTGCGTTCCACCATCTCTGAAGT-----------CCTGAGCCCCTTCTCAAGTGT-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58027981 146 -  94987271 -GGCCTAATCCCTA-GTAAATCCA----AAGAA--GCGCTTTTGATTAATAACTAACCTCCCACATCTGGCAAGTGCCTAAGATT-AG---AGCCCTAGTCTCACCAGTTGCACCACCTTCAAACTAAACTAAACTCCCTAAACTCTCTCTCAAATGT-
i mm10.chr17               C 0 C 0
s dasNov3.JH569887            11591 129 -     22419 CCGCCGAAGCCTTAGTGAAAGCCTACTCGATGGCTGCCCCCTTGTTTAAT-GCCAGTCTTCCTCACCTGTCAGGCGCCTGAGGCT-AGCGGCGCCTGAAGCC--------------CCTCTCAAGT-----------CCCGAACCCCTCC---AATGCC
i dasNov3.JH569887         C 0 C 0
e canFam3.chr35            26284688 1101 +  26524999 I
e aotNan1.NW_018496904v1     307251 958 -    383796 I
e calJac3.chr4             30365980 864 + 171630274 I

a score=348754.000000
s hg38.chr6_GL000254v2_alt  1404739 38 +   4827813 ACCACTTCATCCCTGCTTCCTTTCGTCCCGTGGGACTA
s panTro5.chr6             30278186 38 + 175400573 CCCACTTCATCCCTGCTTCCTTTCGTCCCGTGGGACTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30508732 38 + 173848474 CCCACTTCATCCCTGCTTCCTTTCGTCCCGTGGGACTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     215600 38 +   2037526 CCCACTTCATCCCTGCTTCCTTTCGTCCCGTGCGACTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74888629 38 + 122973662 CCCACTTCATCACTGCTTCCTTTCGTCCCATGGGACTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762129 38 + 172585720 CCCACTTCATCCCTGCTTCCTTTCGTCCCGTGGGACTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30057272 38 - 170955103 CCCACTTCATCCCTGCTTCCTTTCGTCCCGTGGGACTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     306560 38 +   1495729 CCCACTTCATCCCTGCTTCCTTTCGTCCCGTGGGACTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     404476 38 -    863181 CCCACTTCATCCCTGCTTCCTTTCGTACCGTGGGACTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29556516 38 -  71996105 CCCACTTCATCCCCGCTTCCTTTCGTCCTGTGGGACTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239119 38 -    735854 CCCACTTCATCCCTGCTTCCTTTCGTACCGTGGGACTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     194561 38 -   1829203 CCCACTTCATCCCTGCTTCCTTTCGTCCCGTGGGAGTA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           189124 38 +    515838 CCCACTTCATCCCTGCTTCCTTTCATCCACTGGGACTA
i saiBol1.JH378341         C 0 I 2628
s cebCap1.NW_016107755v1     821636 38 -   1771730 CCCACTTCATCCCTGCTTCCTTTCATCCACTGGGACTA
i cebCap1.NW_016107755v1   C 0 I 1179
s proCoq1.NW_012149775v1      90846 29 -   1411461 ------TCATCCCTGTTTC---CTCTCCTGTGGGACTA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           234432 37 +  18854210 CCCACTTTATCTTTGCTTC-TGTCCGTCCGTGGGACTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58028127 14 -  94987271 ---------CGCATGTGTCTTCT---------------
i mm10.chr17               C 0 C 0
s dasNov3.JH569887            11720 33 -     22419 CCCACTGCATCCCCGCTTCCTTTCA-----CGGGACCG
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               286983 489 + 123392446 I
e canFam3.chr35            26284688 1101 +  26524999 I
e aotNan1.NW_018496904v1     307251 958 -    383796 I
e calJac3.chr4             30365980 864 + 171630274 I

a score=89557.000000
s hg38.chr6_GL000254v2_alt  1404777 14 +   4827813 AGCATTCCTCGGGC--
s panTro5.chr6             30278224 14 + 175400573 AGCATTCCTCCTGC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30508770 14 + 173848474 AGCATTCCTCCTGC--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     215638 14 +   2037526 AGCATTCCTCCTGC--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74888667 14 + 122973662 AGCATTCCTCCTGC--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762167 14 + 172585720 AGGATTCCTCTGGC--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30057310 14 - 170955103 AGGATTCCTCTGGC--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     306598 14 +   1495729 AGGATTCCTCTGGC--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     404514 14 -    863181 AGGATTCCTCCTGC--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29556554 14 -  71996105 AGGATTCCTCCTGC--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239157 14 -    735854 AGGATTCCTCCTGC--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     194599 14 -   1829203 AGGATTCCTCCTGC--
i colAng1.NW_012115577v1   C 0 C 0
s proCoq1.NW_012149775v1      90875 14 -   1411461 AGCATTCCTCCGGA--
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           234469 14 +  18854210 AGCATTCCTCCTGA--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58028141  2 -  94987271 ------------GC--
i mm10.chr17               C 0 C 0
s dasNov3.JH569887            11753 16 -     22419 AGCAGTCCTCCTCCGT
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               286983 489 + 123392446 I
e canFam3.chr35            26284688 1101 +  26524999 I
e saiBol1.JH378341           189162 2628 +    515838 I
e aotNan1.NW_018496904v1     307251 958 -    383796 I
e cebCap1.NW_016107755v1     821674 1179 -   1771730 I
e calJac3.chr4             30365980 864 + 171630274 I

a score=32976.000000
s hg38.chr6_GL000254v2_alt  1404791 3 +   4827813 CTT
s panTro5.chr6             30278238 3 + 175400573 CTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30508784 3 + 173848474 CTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     215652 3 +   2037526 CTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74888681 3 + 122973662 CTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762181 3 + 172585720 CTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30057324 3 - 170955103 CTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     306612 3 +   1495729 CTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     404528 3 -    863181 CTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29556568 3 -  71996105 CTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239171 3 -    735854 CTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     194613 3 -   1829203 CTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30366844 3 + 171630274 CTT
i calJac3.chr4             I 864 C 0
s proCoq1.NW_012149775v1      90889 3 -   1411461 CTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           234483 3 +  18854210 CTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58028143 3 -  94987271 CTT
i mm10.chr17               C 0 C 0
s dasNov3.JH569887            11769 3 -     22419 CCA
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               286983 489 + 123392446 I
e canFam3.chr35            26284688 1101 +  26524999 I
e saiBol1.JH378341           189162 2628 +    515838 I
e aotNan1.NW_018496904v1     307251 958 -    383796 I
e cebCap1.NW_016107755v1     821674 1179 -   1771730 I

a score=421613.000000
s hg38.chr6_GL000254v2_alt  1404794 37 +   4827813 CACTCTCACCACTTGCTGTCCCTCAAAAAGCCGACTC
s panTro5.chr6             30278241 37 + 175400573 CACTCTCACCACTTGCTGTCCCTCAAAAAGCCGACTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30508787 37 + 173848474 CACTCTCACCACTTGCTGTCCCTCAAAAAGCCGACTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     215655 37 +   2037526 CACTCTCACCACTTGCTGTCCCTCAAAAAGCCGACTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74888684 37 + 122973662 CATTCTCACCACTTGCTGTCCCTCAAGAAGCCGACTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762184 37 + 172585720 CACCCTCACCACTTGCTGTCCCTCAAGAAGCCGACTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30057327 37 - 170955103 CACCCTCACCACTTGCTGTCCCTCAAGAAGCCGACTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     306615 37 +   1495729 CACCCTCACCACTTGCTGTCCCTCAAGAAGCCGACTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     404531 37 -    863181 CACCCTCACCACTTGCTGTCCCTCAAGAAGCCGACTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29556571 37 -  71996105 CACCCTCACCACTTGCTGTCCCTCAGTAAGCCGACTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239174 37 -    735854 CACCCTCACCACTTGCTGTCCCTCAAGAAGCCGACTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     194616 37 -   1829203 CACCCTCACCACTTGCCGTCCCTCAAGAAGCCGACTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30366847 37 + 171630274 CACCCTCACCACTTGCGGTCCCTCAAGAATCCGACTT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     822853 37 -   1771730 CACCCTCACCACTTGCTGTCCCTCAAGAATCCGACTT
i cebCap1.NW_016107755v1   I 1179 C 0
s proCoq1.NW_012149775v1      90892 37 -   1411461 CACCCTCCCCACTTTCTGTCCCTTAAGAAGCCCACTC
i proCoq1.NW_012149775v1   C 0 I 446
s otoGar3.GL873550           234486 36 +  18854210 CACCCTCCCCTCTTCCTGTCCCTGAAGAAGTCCACT-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58028146 37 -  94987271 CACCCTCACCATTCCACACTCCTTACGAAGCTGACTC
i mm10.chr17               C 0 C 0
s dasNov3.JH569887            11772 37 -     22419 CACCCTTACTGCTTTCTGTCCCTGAAGAAGCGGACTC
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               286983 489 + 123392446 I
e canFam3.chr35            26284688 1101 +  26524999 I
e saiBol1.JH378341           189162 2628 +    515838 I
e aotNan1.NW_018496904v1     307251 958 -    383796 I

a score=256771.000000
s hg38.chr6_GL000254v2_alt  1404831 34 +   4827813 ACCCCTTTCCAAGCGCAGTGAACCGTCCGCAAA---G----
s panTro5.chr6             30278278 34 + 175400573 ACCCCTTTCCAAGCGCAGTGAACCGTCCGCAAA---G----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30508824 34 + 173848474 ACCCCTTTCCAAGCGCAGTGAACCGTCCGCAAA---G----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     215692 34 +   2037526 ACCCCTTTCCAAGCGCAGTGAACCGTCCGCAAA---G----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74888721 37 + 122973662 ACCCCTTTCCAAGCGCGGCGAACCGTCCGCAAAAGCA----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762221 34 + 172585720 ACCCCTTTCCAAGCGCGGTGAACCGTCCGCAAA---G----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30057364 34 - 170955103 ACCCCTTTCCAAGCGCGGTGAACCGTCCGCAAA---G----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     306652 34 +   1495729 ACCCCTTTCCAAGCGCGGTGAACCGTCCGCAAA---G----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     404568 34 -    863181 ACCCCTTTCCAAGCGCGGTGAACCGTCCGCAAA---G----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29556608 34 -  71996105 ACCCCTTTCCAAGCGCGGTGAACCGTCCGCAAA---G----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239211 34 -    735854 ACCCCTTTCCAAGCGCGGTGAACCGTCCGCAAA---G----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     194653 34 -   1829203 ACCCCTTTCCAAGCGCGGTGAACCGTCCGCAAA---G----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30366884 31 + 171630274 ACCCCTTACAA---GCGGCGAACTGTTCCCAAA---G----
i calJac3.chr4             C 0 I 2
s cebCap1.NW_016107755v1     822890 31 -   1771730 ACCCCTTATAA---GCGGCGAACGGTTCCCAAA---G----
i cebCap1.NW_016107755v1   C 0 I 2
s otoGar3.GL873550           234522 30 +  18854210 ----CCTTCCAAGTGCCCGGAACTGCCCGAAAA---C----
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58028183 26 -  94987271 ------ACTCAAGTGCTCAGAACTGCCCG--AA---G----
i mm10.chr17               C 0 I 2
s dasNov3.JH569887            11809 37 -     22419 -ACACCGTCCAAGCGCCCTGAACTATGCCCAAA---CAGCA
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               286983 489 + 123392446 I
e proCoq1.NW_012149775v1      90929 446 -   1411461 I
e canFam3.chr35            26284688 1101 +  26524999 I
e saiBol1.JH378341           189162 2628 +    515838 I
e aotNan1.NW_018496904v1     307251 958 -    383796 I

a score=804586.000000
s hg38.chr6_GL000254v2_alt  1404865 87 +   4827813 CACG-----AGGCCGGTTGCGAGCTGCAG--AA-AGCCCACGCTC-GCCAGCGGGA-CCCAAGGAACGCTAGAACTATACGTCCCAGAACACTTAGC-----
s panTro5.chr6             30278312 87 + 175400573 CACG-----AGGCCGGTTGCCAGCTGCAG--AA-AGCCCACGCTC-GCCAGCGGGA-CCCAAGGAACGCTAGAACTATACGTCCCAGAACACGTAGC-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30508858 87 + 173848474 CACG-----AGGCCGGTTGCCAGCTGCAG--AA-AGCCCACGCTC-GCCAGCGGGA-CCCAAGGAACGCTAGAACTATACGTCCCAGAACACTTAGC-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     215726 87 +   2037526 CACG-----AGGCGGGTTGCGAGCTGCAG--AA-AGCCCACGCTC-GCCAGCGGGA-CCCAAGGAACGCTGGAACTATACGTCCCAGAACACTTAGC-----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74888758 87 + 122973662 CACG-----AGGCCGGTTGCACCCTGCAG--AA-AGCCCACGCTC-GCCAGCGGGA-CCCAAGGAACGCCAGAACTATACGTCCCAGAACATTTAGC-----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762255 88 + 172585720 CACAC----AGGCCGGCTGCGCTCTGCAG--AA-AGCCCAAGCTC-GCCAGCGGGA-CCCAAGGAACGCTAGAACTATACATGCCAGAACACTTAGC-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30057398 88 - 170955103 CACAC----AGGCCGGCTGCGCTCTGCAG--AA-AGCCCACGCTC-GCCAGCGGGA-CCCAAGGAACGCTAGAACTATACATGCCAGAACACTTAGC-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     306686 88 +   1495729 CACAC----AGGCCGGCTGCGCTCTGCAG--AA-AGCCCACGCTC-GCCAGCGGGA-CCCAAGGAACGCTAGAACTATACATGCCAGAACACTTAGC-----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     404602 88 -    863181 CACAC----AGGCCGGCTGCGCTCTGCAG--AA-AGCCCACGCTC-GCCAGCGGGA-CCCAAGGAACGCTAGAACTATACATGCCAGAACACTTAGC-----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29556642 88 -  71996105 CACAC----AGGCCGGCTGCGCTCTGCAG--AA-AGCTCACGCTC-GCCAGCGGGA-CCCAAGGAACGCTAGAACTATACGTGCCAGAACACTTAGC-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239245 88 -    735854 CACAC----AGGCCGGCTGCGCTCTGCAG--AA-AGCCCACGCTC-GCCAGCGGGA-CCCAAGGAACGCTAGAACTATACGTGCCAGAACACTTAGC-----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     194687 88 -   1829203 CACAC----AGACCGGCTGCGCTCTGCAG--AA-AGCCCACGCTC-GCCAGCGGGA-CCCAAGGAACGCTAGAACTATACGTGCCAGAATACTTAGC-----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30366917 87 + 171630274 CACA-----AGGCTAGTTGCGCTCTGCTG--AA-AGCCCACGTTC-TCCAGCGGGA-CCCAAGGAACACTAAAACTGTACGTCCCAGAACACTTAGC-----
i calJac3.chr4             I 2 C 0
s cebCap1.NW_016107755v1     822923 87 -   1771730 CACG-----AGGCTGGTTGCGCTCTGCAG--AA-AGCCCACGCTC-GCCGGCGGGA-CCCAAGGAACGCTAAAACTTTACGTCCCAGAACACTTAGC-----
i cebCap1.NW_016107755v1   I 2 C 0
s aotNan1.NW_018496904v1     308209 87 -    383796 CACG-----AGGCTGGTTGCGCTCTGCAG--AA-AGCCCACGCTC-GCCAGCGGGA-CCCAAGGAACGCTAAAACTATACGTCCCAGAACACTTAGC-----
i aotNan1.NW_018496904v1   I 958 C 0
s otoGar3.GL873550           234553 87 +  18854210 CACA-----AGGCAAGATGAACGCTGCAG--AG-A--CCAAGCTTGGCTACCGGGATCCCAAGGGACACTAGAACTCGAAGCCCCTGAATGCCTAGC-----
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58028211 73 -  94987271 CACGCGAGGAAGCTGG--------TGCAGCCAA-GGGACAAACG--GCCAGGAGAG-CCCAAAAGA------------ATGGGCAAGAATGCTTCTC-----
i mm10.chr17               I 2 I 3
s dasNov3.JH569887            11846 92 -     22419 CGCG-----AGCCACGCTGGGCTCTGCAG--AGCAGCCCACGCAG-GACAGCTGGA-GCC-GGAAACACTAGAGCCGGGACAGCCGGAAGACAAAGGCTCCC
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               286983 489 + 123392446 I
e proCoq1.NW_012149775v1      90929 446 -   1411461 I
e canFam3.chr35            26284688 1101 +  26524999 I
e saiBol1.JH378341           189162 2628 +    515838 I

a score=2388772.000000
s hg38.chr6_GL000254v2_alt  1404952 219 +   4827813 TTTGTTTTTAACTACGGTGCAGCCGCAAAAGG------------------------------------------------GAAATACCGGCTCAGGACCCAG-GGGAGTTGTAGTTCTCT-AATCC-AAA-GAAATCATTATT---------------TGGCA----ACGTACGGT----TTTCAGGGGGA-------TA-TACCCCGCGACTGCGTTCCTGTAGGATGTGAGACA--------AAGAGAATAAGTAT-CCCAGGATTGGGTGCTGGTGGGAAAATTTGCTGGAAGCGCAGCATTGGTTAC
s panTro5.chr6             30278399 219 + 175400573 TTTGTTTTTAACTACGGTGCAGCCGCAAGAGG------------------------------------------------GAAATACCGGCTCAGGACCCAG-GGGAGTTGTAGTTCTCT-AATCC-AAA-GAAATCATTATT---------------TGGCA----ACGTACGGT----TTTCAGGGGGA-------TA-TACCCCGCGACTGCGTTCCTGTAGGATGTGAGACA--------AAGAGAATAAATAT-CCCAGGATTGGGTGCTGGTGGGAAAATTTGCTGGAAGCGCAGCATTGGTTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30508945 219 + 173848474 TTTGTTTTTAACTACGGTGCAGCCGCAAAAGG------------------------------------------------GAAATACCGGCTCAGGACCCAG-GGGAGCTGTAGTTCTCT-AATCC-AAA-GAAATCATTATT---------------TGGCA----ACGTACGGT----TTTCAGGGGGA-------TA-TACCCCGCGACTGCGTTCCTGTAGGATGTGAGACA--------AAGAGAATAAATAT-CCCAGGATTGGGTGCTGGTGGGAAAATTTGCTGGAAGCGCAGCATTGGTTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     215813 219 +   2037526 TTTGTTTTTAACTACGGTGCAGCCGCAAAAGG------------------------------------------------GAAATACCGGCTCAGGACCCAG-GGGAGTTGTAGTTCTCT-AATCC-AAA-GAAATCATTATT---------------TGGCA----ACGTACGGT----TTTCAGGGGGA-------TA-TACCCCGCGACTGCGTTCCTGCAGGATGTGAGACA--------AAGAGAATAAATAG-CCCAGGATTGGGTGCTGGTGGGAAAATTTGCTGGAAGCGCAGCATTGGTTAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74888845 216 + 122973662 TTTGTTTTTAACTACTGTGCAGCCGCAAAAGG------------------------------------------------GAAATACCAGCTCAGGACCCAG-GGGAGTT---GTTCTCT-AATCC-AAA-AAAATCATTATT---------------CGGCA----AAGTAAGGT----TTTCAGGGGGA-------TA-TACCCCGCGACTGCATTCCTGTAGGATGTGAGACA--------AAGAGAATAAAGAT-CCCAGGATTGGGTGCTGGTGGGAAAATTTGCTGGAAGCGCAGCATTGGTTAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762343 218 + 172585720 TTTGTTTTTAACTACTGTGCAGCCGCAAAAGG------------------------------------------------GAAATACCAGCTCAGGACCCAG-GGGAATTGTAGTTCTCT-AATCC-AAA-GAAGTCATTATT---------------CAGCA----AAGTACGGT----TTTCAGAAGGA-------TATTCCCCCGCGATTGGGTTCCCGCAGGATGTGAAAC----------AGAGAATAAATAT-TCCAGGATTCGGTGCTGGTGGGAAAATTTGCTGGAAGCGCAGCATTGGTTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30057486 218 - 170955103 TTTGTTTTTAACTACTGTGCAGCCGCAAAAGG------------------------------------------------GAAATACCAGCTCAGGACCCAG-GGGAGTTGTAGTTCTCT-AATCC-AAA-GAAGTCATTATT---------------CAGCA----AAGTACGGT----TTTCAGGAGGA-------TATTCCCCCGCGATTGGGTTCCCGCAGGATGTGAAAC----------AGAGAATAAATAT-CCCAGGATTCGGTGCTGGTGGGAAAATTTGCTGGAAGCGCAGCATTGGTTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     306774 218 +   1495729 TTTGTTTTTAACTACTGTGCAGCCGCAAAAGG------------------------------------------------GAAATACCAGCTCAGGACCCAG-GGGAGTTGTAGTTGTCT-AATCC-AAA-GAAGTCATTATT---------------CAGCA----AAGTACGGT----TTTCAGGAGGA-------TATTCCCCCGCGATTGGGTTCCCGTAGGATGTGAAAC----------AGAGAATAAATAT-CCCAGGATTCGGTGCTGGTGGGAAAATTTGCTGGAAGCGCAGCATTGGTTAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     404690 218 -    863181 TTTGTTTTTAACTATTGTGTAGCCGCAAAAGG------------------------------------------------GAAATACCAGCTCAGGACCCAG-GGGAGTTGTAGTTCTCT-AATCC-AAA-GAAGTCATTATT---------------CAGCA----AAGTACGGT----TTTCAGGAGGA-------TATTCCCCCGCGATTGGGTTCTCGTAGGATGTGAAAA----------AGAGAATAAATAT-CCCAGGATTCGGTGCTGGTGGGAAAATTTGCTCGAAGCGCAGCACTGGTTAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29556730 218 -  71996105 TTTGTTTTCAACTACTGTGCAGCCGCAAAAGG------------------------------------------------GAAATACCAGCTCAGGACCCAA-GGGAGTTGTAGTTCTCT-AATCC-AAA-GAAGTCATTATT---------------CAGCA----AAGTACGGT----TTTCAGGAGGA-------TATTCCCCCGCGATTGGGTTCCCGTAGGATGTGAAAC----------AGAGAATAAATAT-CCCAGGATTCGGTGCTGGTGGGAAAATTTGCTGGAAGCGCAGCATTGGTTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239333 218 -    735854 TTTGTTTTTAACTACTGTGCAGCCGCAAAAGG------------------------------------------------GAAATACCAGCTCAGGACCCAG-GGGAGTTGTAGTTCTCT-AATCC-AAA-GAAGTTATTATT---------------CAGCA----AAGTACGGT----TTTCAGGAGGA-------TATTCCTCCGCGATTGGGTTCCCGTAGGATGTGAAAA----------AGAGAATAAATAT-CCCAGGATTCGGTGCTGGTGGGAAAATTTGCTGGAAGCGCAGCACTGGTTAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     194775 220 -   1829203 TTTGTTTTTAACTACTGTGCAGCCGCAAAAGG------------------------------------------------GAAATAGCAGCTCAGGACCCAG-GGGTGTTGTAGTTCTCT-AATCC-AAA-GAAGTCATTATT---------------CAGCA----AAGTACGGT----TTTCAGGAGGA-------TATTACCCCGCGACTGGGTTCCCGTAGGATGTGAAACA--------AAGAGAATAAATAT-CCCAGGATTCGGTGCTGGTGGGAAAATTTGCTGGAAGCGCAGCATTGGTTAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30367004 217 + 171630274 TTTCTTTTTAACTACTCTGCAGCCGCAAAAGG------------------------------------------------GAAAAACCTGCTCAGGATCAGG-GATAGTTGTAGTTCTCT-AATCC-AAA-GAAATCAGTATT---------------CAGCA----AAATACAGT----TTTCAGGGGGA-------TA-TCTCCCGGGACTCGGTTCCTGTAGGATGTGAGAC----------AAAGAATAAATAT-CCGAGGATTGGGTACTGGTGGGAAAATTTGCTGGAAGCGCAGCATTGGCTAC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     823010 232 -   1771730 TTTCTTTTTAACTACTCTGCAGCCGCAAAAGG------------------------------------------------GAAATACCGGCTCAGGATCAGG-G-TAGTTGTAGTTCTCT-AATCC-AAA-GAAATCAGTATTTTTAAATATGATTTACGGCA----AAATACGGT----TTTCAGGGGGA-------TA-TCCCCCGGGACTCGGTTCCTGTAGGATGTGAGAC----------AAAGAATAAATATCCCCAGGATTGGGTGCTGATGGGAAAATCGGCTGGAAGCGCATCATTGGCTAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     308296 217 -    383796 TTTCTTTTTAACTACTCTGCAGCCGCAAAAGG------------------------------------------------GAAATACCGGCTCAGGATCAGG-GGTAGTTGTAGTTCTCT-AATCC-AAA-GAAATCAGTATT---------------CGGCG----AAATACGGT----TTTCAGGGAGC-------TA-TCCCCCGGGACTCTGTTCCTGTAGGATGTGAGAC----------AAAGAATAAATAT-CCCAGGATTGGGTACTGGTGGGAAAATTTGCTGGAAGCGCAGCATTGGCTAC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               287472 218 + 123392446 TTTGTTTTTAACCACCACACAGCCGTAAAAGA------------------------------------------------GAAAAACTGGCTCAGGAACGGC-GGGAGTTGTAGTTCTCT-AATCC-AAA-GAAATCAGTATT---------------CGGTA----TAGTACAGT----TTTCAGGAGGA---CCCCCGCTTCC------CTGGGCCTTTGTAGGATGTGAGACA--------AAGAAAATAAATAT-CCAAAGATTGGGCGCTGGTAGGAAAATTAGCCAGAAGCGCAGCACTGGTTAC
i micMur3.chr6             I 489 I 158
s proCoq1.NW_012149775v1      91375 230 -   1411461 TTTGTTTTTAACCACTACACAGCCGCAAAAGG------------------------------------------------GAAAAACCGGCTCAGGAACGGT-GGGAGTTGTGGTGCTCT-AATCC-AAA-GAAATCAGTATT---------------CGGTAAGGTTAGTACAGT----TTTCAGGAGGA-CTCCCCCACTCCCCTGCAACTGGGTCTCTGTAGCATGTGAGACA--------AAGAAAATAAATAT-ACCGGGATTGGGTGCTGGTAGGAAAATTAGCCAGAAGCACAGCACTGATTAC
i proCoq1.NW_012149775v1   I 446 C 0
s otoGar3.GL873550           234640 220 +  18854210 ------TTTAACCACTGCACAGACGCAAAAGC------------------------------------------------GAAATACCGGTTCAAGGACGGC-GAGAGGTGTAGTTCTCT-AATCCTAAA-AAAATCAGTATT---------------CGGTA--GTTGGT--TGT----GTTCGGGGAGACCTGCCCCACGCCC--GCGACTGGGTCTCTGTAGGATGTATGACA--------AAGAAAATACATAT-CCCAGGATTGGATGCCGGTAGGAAAATTAGCCAGAAGTGCAGCGCTGGTTAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58028287 278 -  94987271 TTTGCTGTTGGCCACTGAGCAGCCGCAAAAGGACaaaacaaacaaacaaacaaaaaacccaaaaacaaaaaacaaaaacaaaaaaACGGTCTCGGGAACCGGCAAGAGTTGCGGCTCTCTCAATCC-AAGCGAATCCGTTGCT---------------CTGGA----AAAATCAGTCCAGTTTTAGGGGGG-------TGTTCCC----AACCCCCTTACCCTGCTATGTGTAGGGCTCCCTACAAAAGCAGTAATAA-TCCAGGACT-AGTGCGGAGCGGGAAAGTAGCGGACGGCCTAACTCTGGCTAC
i mm10.chr17               I 3 C 0
s dasNov3.JH569887            11938 185 -     22419 ATTGTCTTTAACCACTGAGCAGCCCCAGAGCA------------------------------------------------GAGAGACCCGCTCAGGAACGGC-GGGAGTCGGGGTTCTCT-AATCA-----GGGACTAGTATT---------------TACGA----A-----GGT----TTTTTGGGGGA-------AG-------GCAATCG--------------GCGAGGCC--------GAGAGAACAAACAT-TC-ACCGCTAAATACAAG-GGTAAAAGCCGCCAGAGGAGTAGCATCAT----
i dasNov3.JH569887         C 0 C 0
e canFam3.chr35            26284688 1101 +  26524999 I
e saiBol1.JH378341           189162 2628 +    515838 I

a score=10834.000000
s hg38.chr6_GL000254v2_alt  1405171 1 +   4827813 C
s panTro5.chr6             30278618 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30509164 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     216032 1 +   2037526 C
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74889061 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762561 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30057704 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     306992 1 +   1495729 C
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     404908 1 -    863181 C
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29556948 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239551 1 -    735854 C
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     194995 1 -   1829203 C
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30367221 1 + 171630274 G
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     823242 1 -   1771730 C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     308513 1 -    383796 C
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      91605 1 -   1411461 C
i proCoq1.NW_012149775v1   C 0 I 157
s otoGar3.GL873550           234860 1 +  18854210 C
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58028565 1 -  94987271 T
i mm10.chr17               C 0 I 6
s dasNov3.JH569887            12123 1 -     22419 C
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               287690 158 + 123392446 I
e canFam3.chr35            26284688 1101 +  26524999 I
e saiBol1.JH378341           189162 2628 +    515838 I

a score=1416807.000000
s hg38.chr6_GL000254v2_alt  1405172 162 +   4827813 AATTTTGTGCTC----AACCTCTCAGTACCAGGGTGAAAGTGGAGACGCAATCTCCCTTGGA--AGACGTTAGTCTCCATCTCTAACGCTCCCGAGACACGGTTCGCAATTAATTATGACGTCACAG-CCAATCGTCAACGC--GAAAGCC-TGACGCTCTAGCCGGCTCTA
s panTro5.chr6             30278619 157 + 175400573 AATTTTGTG---------CCTCTCAGTACCAGGGTGAAAGTGAAGACGCAATCTCCCTTGGA--AGACGTTAGTCTCCATCTCTAACGCTCCCGAGACACGGTTCGCAATTAATTATGACGTCACAG-CCAATCGTCAGCGC--GAAAGCC-TGACGCTCTAGCCGGCTCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30509165 162 + 173848474 AATTTTGTGCTC----AACCTCTCAGTACCAGGGTGAAAGTGGAGACGCAATCTCCCTTGGA--AGACGTTAGTCTCCATCTCTAACGCTCCCGAGACACGGTTCGCAATTAATTACGACGTCACAG-CCAATCGTCAGCGC--GAAAGCC-TGACGCTCTAGCCGGCTCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     216033 162 +   2037526 AATTTTGTGCTC----AACCTCTCAGTACCAGGGTGAAAGTGGAGACGCAATCTCCCTTGGA--AGACGTTAGTCTCCATCTCTAACGCTCCAGAGACACGGTTCGCAATTAATTATGACGTCACAG-CCAATCGTCAGCGC--GAAAGCC-TGACGCTCTAGCCGGCTCTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74889062 161 + 122973662 AATTTTGCGCTC----AACGTCTCAGTACCAGGGTGAAAGTGGAGCCGCGATCTCCCTTGGA--AGACGTTAGTCTCCATGTCTAAGGCTCCCGAAACACGGTTCGCAA-TAATTATGACGTCACAG-CCAATCGTCAGCCC--GAAAGCC-TGACGCTCTAGCCGGCTCGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762562 162 + 172585720 AATTTTGTGCTC----AACGTCTCAGTATCAGCCTGAAAGTTGAGCCGCAACCTCCCTTAGA--AGAGGTGACTCTCCATCTCTAAGGCTTCCGAGACACGGTTCGCAATTAATTATGACGTCACAG-CCAATCGTCAGCGT--GCAAGCG-TGACGCTCTAGCCGGCTCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30057705 162 - 170955103 AATTTTGTGCTC----AACGTCTCAGTATCAGCCTGAAAGTTGAGCCGCAACCTCCCTTAGA--AGAGGTGACTCTCCATCTCTAAGGCTTCCGAGACACGGTTCGCAATTAATTATGACGTCACAG-CCAATCGTCAGCGT--GAAAGCG-TGACGCTCTAGCCGGCTCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     306993 162 +   1495729 AATTTTGTGCTC----AACGTCTCAGTACCAGCCTGAAAGTTGAGCCCCAACCTCCCTTAGA--AGAGGTGACTCTCCATCTCTAAGGCTTCCGAGACACGGTTCGCAATTAATTATGACGTCACAG-CCAATCGTCAGCGT--GAAAGCG-TGACGCTCTAGCCGGCTCTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     404909 164 -    863181 AATTTGGTGCTC----AACGTCTCAGTACCAGCCTGAAAGTTGAGCCGCAACCTCCCTTAGA--AGAGGTGACTCTCCATCTCTAAGGCTTCCGAGACACGGTTCGCAATTAATTATGACGTCACAG-CCAATCGTCAGCGTAAAAAAGCG-TGACGCTCTAGCCGGCTCTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29556949 160 -  71996105 AATTTTGTGCTC----AACGTCTCAGTACCAGCATGAAAGTTGAGCCGCAAACTCCCTTAGA--AGAGATGA--CTCCATCTCTAAGGCTCCCGAGACACGGTTCGCAATTAATTATGACGTCACAG-CCAATCGTCAGCGC--GAAAGCG-TGACGCTCTAGCCGCCTCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239552 162 -    735854 AATTTGGTGCTC----AACGTCTCAGTACCAGCCTGAAAGTTGAGCCGCAACCTCCCTTAGA--AGAGGTGACTCTCCATCTCTAAGGCTTCCGAGACACGGTTCGCAATTAATTATGACGTCACAG-CCAATCGTCAGCGT--AAAAGCG-TGACGCTCTAGCCGGCTCTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     194996 162 -   1829203 AATTTTGTGCTC----ACCGTCTCAGTACCAGCATGAAAGTTGAGCCGCAACCTCCCTTAGA--AGAGGTTACTCTCCATCTTTAAGGCTCCCGAGACAGGGTTCGCAATTAATTATGACGTCACAG-CCAATCGACAGCGC--GAAAGCG-TGACGCTCTAGCCGGCTCTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30367222 162 + 171630274 AATTTTGTGCTC----AACGTCTCAGCACTAGGGTGAAAGTGAAGCCGCAAACTCCCTTCGG--AGAGGTTAGGCTCCATCTCTAAGGCTCCCGAGACAAGGTTCGCAATTATTTATGACGTCACAA-CCAATTGTCAGCCC--GAATGCG-TGACGCTCTAGCCGGCTCTA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     823243 152 -   1771730 AGTTTTGTGCTC----AACGTCTCAGCACTAGGGTGAAACTCGTACCGCAAACACCCTTCGG--AGAGGTTGGGCTCCATCTCTAAGGCTCCCGAGACACGGTTCGCAATTAATTATGACGTCACAA-CCAATCGTCAGCCC--GAATGCG-TGAC----------ACTCTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     308514 162 -    383796 AGTTTTGTGCTC----AACGTCTCAGCACTAGGGTGAAAGTGGAGCCACAAACTCCCTTCGA--AGAGGTTAGGCTCCATCTCTAAGGCTCCCGAGACACGGTTCGCAATTAATTATGACGTCACAA-CCAATCGTTAGCCC--GAATGCG-TGACGCTCTAGCCGGCTCTA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           234862 144 +  18854210 GCTTTCTTACTC----AACGTCACAGTACCAGGGTAAAGGTTGCGCCGCAGTCTCCCTTTGG--AGAAATTCGGCTTCACTACAATTGTTCTCGAG-------------------ATGACGTCATAG-CCAATCGTGAGCCC--GAACGCATTGACGCTCTAGCCCGCCACG
i otoGar3.GL873550         I 1 I 1
s mm10.chr17               58028572 150 -  94987271 AACTTAGT---C----GACGTCATAGTACCATACTGC--GTGCCGCTGTAAATTCCCTTCCGCCAGAGGTTCGGCTTAAACT-----GCCTCCAATAT---GTGCGCCATTGATTATGACGTCACGA-CCCAACGGCCACCA--GGACGCGAAGACGCTCTAGCC--CTCCG
i mm10.chr17               I 6 I 6
s dasNov3.JH569887            12124 144 -     22419 GAGTCGCTCCTCCTCTGACGTCACAATATCACACCGAAGGC-GAACCGCCCGCCCGCTCCCG--AGAG-------------------GCTTCGGGGCTCAGGGTCGCGACCACTTATGACGTCTCAGCCCAATCGTGAGCCG--GAACGCGCCGACGCTCTAGGCCGC----
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               287690 158 + 123392446 I
e proCoq1.NW_012149775v1      91606 157 -   1411461 I
e canFam3.chr35            26284688 1101 +  26524999 I
e saiBol1.JH378341           189162 2628 +    515838 I

a score=88550.000000
s hg38.chr6_GL000254v2_alt  1405334 7 +   4827813 TCTCGCT
s panTro5.chr6             30278776 7 + 175400573 TCTCGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30509327 7 + 173848474 TCTCGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     216195 7 +   2037526 TCTCGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74889223 7 + 122973662 TCTCGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762724 7 + 172585720 GCTCGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30057867 7 - 170955103 GCTCGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     307155 7 +   1495729 GCTCGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     405073 7 -    863181 GCTCGCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29557109 7 -  71996105 GCTCGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239714 7 -    735854 GCTCGCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     195158 7 -   1829203 GAGCGCT
i colAng1.NW_012115577v1   C 0 I 6
s calJac3.chr4             30367384 7 + 171630274 GCTCGCC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     823395 7 -   1771730 GCTCGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     308676 7 -    383796 GCTCGCC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               287848 7 + 123392446 TCTCGCT
i micMur3.chr6             I 158 C 0
s proCoq1.NW_012149775v1      91763 7 -   1411461 TCTCGCT
i proCoq1.NW_012149775v1   I 157 C 0
s otoGar3.GL873550           235007 7 +  18854210 GCTCGCT
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58028728 6 -  94987271 -CTCGTT
i mm10.chr17               I 6 C 0
s dasNov3.JH569887            12268 4 -     22419 ---CGCT
i dasNov3.JH569887         C 0 C 0
e canFam3.chr35            26284688 1101 +  26524999 I
e saiBol1.JH378341           189162 2628 +    515838 I

a score=182940.000000
s hg38.chr6_GL000254v2_alt  1405341 18 +   4827813 GCCC--CGCCGCGGGCGCAG
s panTro5.chr6             30278783 18 + 175400573 GCCC--CGCCGCGGGCGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30509334 18 + 173848474 GCCC--CGCCGCGGGCGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     216202 18 +   2037526 GCCC--CGCCGCGGGCGCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74889230 18 + 122973662 GCCC--CGCCGCGGGCGCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762731 18 + 172585720 GCCC--CGCCGCGGGCGCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30057874 18 - 170955103 GCCC--CGCCGCGGGCGCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     307162 18 +   1495729 GCCC--CGCCGCGGGCGCAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     405080 18 -    863181 GCCC--CGCTGCGGGCGCAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29557116 18 -  71996105 GCCC--CGCCGCGGGCGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239721 18 -    735854 GCCC--CGCTGCGGGCGCAG
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30367391 18 + 171630274 GCTG--AGCGGCGGGCGTAG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     823402 18 -   1771730 GCTC--AGCCGCGGGCGCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     308683 18 -    383796 GCTC--AGCCGCGGGCGCGG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               287855 18 + 123392446 GCGC--CGCCGCCTGCGCAG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      91770 18 -   1411461 GCCC--CGTCGCCTGCGCAG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           235014 18 +  18854210 GCCC--CGCCGCCGGCGCAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58028734 15 -  94987271 GCCCGACGCCTTGGG-----
i mm10.chr17               C 0 C 0
s dasNov3.JH569887            12272 12 -     22419 GCCC--GCGCGCGA------
i dasNov3.JH569887         C 0 C 0
e canFam3.chr35            26284688 1101 +  26524999 I
e saiBol1.JH378341           189162 2628 +    515838 I
e colAng1.NW_012115577v1     195165  6 -   1829203 I

a score=404165.000000
s hg38.chr6_GL000254v2_alt  1405359 27 +   4827813 AGCTGGCGCTCTAGCCCAC----GGAGTTGG
s panTro5.chr6             30278801 27 + 175400573 AGCTGGCGCTCTAGCCCAC----GGAGTTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30509352 27 + 173848474 AGCTGGCGCTCTAGCCCAC----GGAGTTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     216220 27 +   2037526 AGCTGGCGCTCTAGCCCAC----GGAGTTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74889248 27 + 122973662 AGCTGGCGCTCTAGCCCAC----GGAGTTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762749 27 + 172585720 AGCTGGCGCTCTAGCCCAC----GGAGTTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30057892 27 - 170955103 AGCTGGCGCTCTAGCCCAC----GGAGTTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     307180 27 +   1495729 AGCTGGCGCTCTAGCCCAC----GGAGTTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     405098 27 -    863181 AGCTGGCGCTCTAGCCCAC----GGAGTTGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29557134 27 -  71996105 AGCTGGCGCTCTAGCCCAC----GGAGTTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239739 27 -    735854 AGCTGGCGCTCTAGCCCAC----GGAGTTGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     195171 27 -   1829203 AGCTGGCGCTCTAGCCCAC----GGAGTTGG
i colAng1.NW_012115577v1   I 6 C 0
s calJac3.chr4             30367409 27 + 171630274 AGCTGCCGCTCTAGCCCAT----GGAGTTGG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     823420 27 -   1771730 AGCTGCCGCTCTAGCCCAC----AGAGTTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     308701 27 -    383796 AGCTGCCGCTCTAGCCCAC----GGAGTTGG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               287873 27 + 123392446 AGCGGGCGCTCCGGCCCGC----GGAGTTGG
i micMur3.chr6             C 0 I 49
s proCoq1.NW_012149775v1      91788 27 -   1411461 AGCCGGCGCTCTAGCCCGC----GGAATTGG
i proCoq1.NW_012149775v1   C 0 I 40
s otoGar3.GL873550           235032 27 +  18854210 AGCTGACGCTCTAGCCCAC----GGAGTTAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58028749 31 -  94987271 ATCGGGCGCTCTAGCCCGCGTCTGGGATCGG
i mm10.chr17               C 0 I 11
s dasNov3.JH569887            12284 22 -     22419 AGGCGGCGCTCTAGCCCGC----GGG-----
i dasNov3.JH569887         C 0 C 0
e canFam3.chr35            26284688 1101 +  26524999 I
e saiBol1.JH378341           189162 2628 +    515838 I

a score=410413.000000
s hg38.chr6_GL000254v2_alt  1405386 50 +   4827813 TTAACTCCTCTCACCGGCCCCTGGAAAGGGTTCCAAGTCCT-TTAGTACCC
s panTro5.chr6             30278828 50 + 175400573 TTAACTCCTCTCACCGGCCCCTGGAAAGGGTTCCAAGTCCT-TTAGTACCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30509379 50 + 173848474 TTAACTCCTCTCACCGGCCCCTGGAAAGGGTTCCAAGTCCT-TTAGTACCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     216247 49 +   2037526 TTAACTCCTCTCACCGG-CCCTGGAAAGGGTTCCAAGTCCT-TTAGTACCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74889275 50 + 122973662 TCAACTCCTCTCGCCGGCCCCAGGAAAGGGTTCCAAGTCCT-TTAGTACCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762776 51 + 172585720 CCAGCTCCTCTCGCCGGCCCCAGGAAAGGGTTCCAAGTCCTTTTAGTACCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30057919 51 - 170955103 CCAGCTCCTCTCGCCGGCCCCAGGAAAGGGTTCCAAGTCCTTTTAGTACCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     307207 51 +   1495729 CCAGCTCCTCTCGCCGGCCCCAGGAAAGGGTTCCAAGTCCTTTTAGTACCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     405125 51 -    863181 CCAGCTCCTCTCGCCGGCCCCAGGAAAGGGTTCCAAGTCCTCTTAGTACCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29557161 51 -  71996105 CCAGCTCCTCTCGCCGGCCCCAGGAAAGGGTTCCAAGTCCTTTTAGTACCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239766 51 -    735854 CCAGCTCCTCTCGCCGGCCCCAGGAAAGGGTTCCAAGTCCTCTTAGTACCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     195198 51 -   1829203 CCAGCTCCTCTCGCCGGCCCCAGGAAAGGGTTCCAAGTCCTTTTAGTACCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30367436 50 + 171630274 CTCGCTCCTCTCGCCGGCCCCAGGAAAGGGTTGCAAGTCCT-TTACTACCC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     823447 50 -   1771730 CTGGCTCCTCTCGCCGGCCCCAGGAAAGGGTTCCAAGTCCT-TTAGTACCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     308728 50 -    383796 CTGGCTCCTCTCGTTGGCCCCAGGAAAGGGTTCCTAGTCCT-TTAGTACCC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           235059 50 +  18854210 CTCTACCCTCACTCCTGCCTGAGGAAAGGGTTGTGAGGTTG-TTAAGAACG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58028791 49 -  94987271 TTTTCCGCCTACGTCGGACCTAAT-GAGGTTCCCCAGCAGC-TGAGGGTCC
i mm10.chr17               I 11 C 0
s dasNov3.JH569887            12306 26 -     22419 TCGGCTGGTCTCCCCGG--------AAGGGGCCT-----------------
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               287900 49 + 123392446 I
e proCoq1.NW_012149775v1      91815 40 -   1411461 I
e canFam3.chr35            26284688 1101 +  26524999 I
e saiBol1.JH378341           189162 2628 +    515838 I

a score=110908.000000
s hg38.chr6_GL000254v2_alt  1405436 14 +   4827813 GACGCTGTCTGGGA
s panTro5.chr6             30278878 14 + 175400573 GAAGCTGTCTGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30509429 14 + 173848474 AGCGCTGTCTGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     216296 14 +   2037526 GACGCTGTCTGGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74889325 14 + 122973662 GACGCTGTCTGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762827 14 + 172585720 GACGCTGTCTGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30057970 14 - 170955103 GACGCTGTCTGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     307258 14 +   1495729 GACGCTGTCTGGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     405176 13 -    863181 -ACGCTGTCTGGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29557212 14 -  71996105 GACGCTGTCTGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239817 13 -    735854 -ACGCTGTCTGGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     195249 14 -   1829203 GACGCTGTGTGGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30367486 14 + 171630274 GACGCTAGCTGGTA
i calJac3.chr4             C 0 I 4
s cebCap1.NW_016107755v1     823497 14 -   1771730 GACGCTAGCTGGTA
i cebCap1.NW_016107755v1   C 0 I 4
s aotNan1.NW_018496904v1     308778 14 -    383796 GACGCTAGCTGGTA
i aotNan1.NW_018496904v1   C 0 I 4
s proCoq1.NW_012149775v1      91855 14 -   1411461 GACGCTGGCTGGGA
i proCoq1.NW_012149775v1   I 40 C 0
s otoGar3.GL873550           235109 10 +  18854210 GAC----GCTGGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58028840  3 -  94987271 TAC-----------
i mm10.chr17               C 0 C 0
s dasNov3.JH569887            12332 13 -     22419 ggcgccgcggcgg-
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               287900 49 + 123392446 I
e canFam3.chr35            26284688 1101 +  26524999 I
e saiBol1.JH378341           189162 2628 +    515838 I

a score=1085187.000000
s hg38.chr6_GL000254v2_alt  1405450 92 +   4827813 ATTCCGGGCGTTTCGGCTCCTTGGTCGCAGAGG---CAGGAGGCGTGCGTGGCAGGAGGGTTCGGGTTATATACTCCTAGGTCCTGGGACAGAAT
s panTro5.chr6             30278892 92 + 175400573 ATTCCGGGCGTTTCGGCTCCTTGGTCGCAGAGG---CAGGAGGCGTGCGTGGCAGGAGGGTTCGGGTTATATACTCCTAGGTCCTAGGACAGAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30509443 92 + 173848474 ATTCCGGGCGTTTCGGCTCCTTGGTCGCAGAGG---CAGGAGGCGTGCGTGGCAGGAGGGTTCGGGTTTTATATTCCTAGGTCCTGGGACAGAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     216310 92 +   2037526 ATTCCGGGCGTTTCGGCTCCTTGGTCGCAGAGG---CAGGAGGCGTGCGTGGCAGGAGGGTTCGGGTTATATACTCCTAGGTCCTGGGACAGAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74889339 92 + 122973662 ATTCCGGGCGTTTCGGCTCCTTGGTCGCAGAGA---CAGGAGGCGTGCGTGGGAGGAGGGCTCGGGTTATATGCTCCTAGGTCCTGGGACAGAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762841 92 + 172585720 GTTCCGGGCGTTTCGGCTCCTTGATCGCAGAGG---CAGGAGGCGTGCGTGGGAGGAGGACTCGGGTGATATACTTCTACGTCCTGGGACGGAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30057984 92 - 170955103 GTTCCGGGCGTTTCGGCTCCTTGATCGCAGAGG---CAGGAGGCGTGCGTGGGAGGAGGACTCGGGTGATATACTTCTACGTCCTGGGACGGAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     307272 92 +   1495729 GTTCCGGGCGTTTCGGCTCCTTGGTCGCAGAGG---CAGGAGGCGTGCGTGGGAGGAGGACTCGGGTTATATACTCCTACGTCCTGGGACGGAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     405189 92 -    863181 GTTCCGGGCGTTTGGGCTCCTTGGTCGCAGAGG---CAGGAAGCGTGCGTGGGAGGAGGACTCGGGTTATATACTCCTACGTCCTGGGACGGAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29557226 92 -  71996105 GTTCCGGGCGTTTCGGCTCCTTGGTCGTAGAGG---CAGGAGGCGTGCGTGGGAGGAGGACTCGGGTTATATACTCCTACGTCCTGGGACGGAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239830 92 -    735854 GTTCCGGGCGTTTCGGCTCCTTGGTCGCAGAGG---CAGGAAGCGTGCGTGGGAGGAGGACTCGGGTTATATACTCCTACGTCCTGGGACGGAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     195263 89 -   1829203 GTTCCGGGCGTTTCGGCTCCTTGGTCGCAGAGG---CAGGAGGCGTGCGTG---GGAGGACTCGGGTTATATACGCCTAAGTCCTGTGACAGAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30367504 92 + 171630274 ATTCCGGGCGTTTCAGCTCCCTGGTCACAGAGG---CAGGAGGCGTGCGTGGGAGGAGAGCTCGGGTTATATACTCCCAGGTACTGGGACAGAAC
i calJac3.chr4             I 4 C 0
s cebCap1.NW_016107755v1     823515 92 -   1771730 ATTCCGGGCGTTTCAGCTGCCTGGTCGCAGAGG---CAGGAGGCGTGCATGGGAGGAGAGCTCGGGTAATATACTCCCAGGTACTGGGACAGAAT
i cebCap1.NW_016107755v1   I 4 C 0
s aotNan1.NW_018496904v1     308796 91 -    383796 ATTCCGGGCGTTTCGGCTCCCTGGTCGC-GAGG---CAGGAGTTGTGCGTGGGAGGAGAGCTCGGGTTATATACTCCCAGGTACTGGGACAGAAT
i aotNan1.NW_018496904v1   I 4 C 0
s micMur3.chr6               287949 92 + 123392446 ATTCCGGACGCTTCGGCTCCTTGGTCGCAGAGG---CAGGCGGCGTGCGTGGGAGGAGGGCTCGGGTTATTTACGCCTAGGTCCTGGGGCAGAGT
i micMur3.chr6             I 49 I 71
s proCoq1.NW_012149775v1      91869 92 -   1411461 ATTCCGGACGTTTCGGCTCTTCGGTCGCAGAGG---CAGGAGGCGTGTGTAGGAGGAGGGCTCGGGTTATTTACGCCTAGGTTCTGGGACAGAGT
i proCoq1.NW_012149775v1   C 0 I 24
s otoGar3.GL873550           235119 92 +  18854210 ATTCCGGACATTTCAGCTCCTCGGTCGCAGAAG---CGGTAGCCGTTAGTAGCAGGAGGTCTCGGGTCATTTATGCCTACGTCCCAGGACAAAGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58028843 75 -  94987271 ----CTAGCACTCCAAACTCTTGCTGTCAGAGGACCCAG----------TGGGAAGAAGACTCAGGTAA---ATTCCT---TCCTGGGAAGCGAT
i mm10.chr17               C 0 C 0
s dasNov3.JH569887            12345 48 -     22419 ggcgcaggcgcgccgggTCGT--------GAGT---C--------TGCGTGG----------------------------GTCCGGGGACAGGCT
i dasNov3.JH569887         C 0 C 0
e canFam3.chr35            26284688 1101 +  26524999 I
e saiBol1.JH378341           189162 2628 +    515838 I

a score=111148.000000
s hg38.chr6_GL000254v2_alt  1405542 16 +   4827813 AGTTACGACCTCTGGG-----
s panTro5.chr6             30278984 16 + 175400573 AGTTACGACCTCTGGG-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30509535 16 + 173848474 AGTTACGACCTCTGGG-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     216402 16 +   2037526 AGTTACGACCTCTGGG-----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74889431 16 + 122973662 AGTTACGACCTCTGGG-----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762933 16 + 172585720 AGTTACCACCTCTGGG-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30058076 16 - 170955103 AGTTACCACCTCTGGG-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     307364 16 +   1495729 AGTTACCACCTCTGGG-----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     405281 16 -    863181 AGTTACCACCTCTGGG-----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29557318 16 -  71996105 AGTTACCACCTCTGGG-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239922 16 -    735854 AGTTACCACTTCTGGG-----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     195352 16 -   1829203 AGTTACCACCTCTGGG-----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30367596 16 + 171630274 TGTTATGACCTCTGTG-----
i calJac3.chr4             C 0 I 2
s cebCap1.NW_016107755v1     823607 16 -   1771730 AGTTCTGACCTCTGTG-----
i cebCap1.NW_016107755v1   C 0 I 2
s aotNan1.NW_018496904v1     308887 16 -    383796 AGTTATGACCTCTGTG-----
i aotNan1.NW_018496904v1   C 0 I 1010
s otoGar3.GL873550           235211 11 +  18854210 ----GTCACCCCTGA------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58028918 14 -  94987271 --GGGGAACCTTCAAG-----
i mm10.chr17               C 0 C 0
s dasNov3.JH569887            12393 21 -     22419 GGGCAGGGCTCTAGTGGTGAG
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               288041 71 + 123392446 I
e proCoq1.NW_012149775v1      91961 24 -   1411461 I
e canFam3.chr35            26284688 1101 +  26524999 I
e saiBol1.JH378341           189162 2628 +    515838 I

a score=30447.000000
s hg38.chr6_GL000254v2_alt  1405558  6 +   4827813 ACAGGA--------
s panTro5.chr6             30279000  6 + 175400573 ACAGGA--------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30509551  6 + 173848474 ACAGGA--------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     216418  6 +   2037526 ACAGGA--------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74889447  6 + 122973662 GCAGGA--------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762949  6 + 172585720 GCAGGA--------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30058092  6 - 170955103 GCAGGA--------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     307380  6 +   1495729 GCAGGA--------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     405297  6 -    863181 GCAGGA--------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29557334  6 -  71996105 GCAGGA--------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239938  6 -    735854 GCAGGA--------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     195368  6 -   1829203 GCGGGA--------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30367614  6 + 171630274 GGGGGG--------
i calJac3.chr4             I 2 C 0
s cebCap1.NW_016107755v1     823625  6 -   1771730 GGGGGG--------
i cebCap1.NW_016107755v1   I 2 C 0
s otoGar3.GL873550           235222  6 +  18854210 ATGGGG--------
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               58028932  6 -  94987271 GCCAGA--------
i mm10.chr17               C 0 C 0
s dasNov3.JH569887            12414 14 -     22419 GCTGGTTTTAAGAA
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               288041 71 + 123392446 I
e proCoq1.NW_012149775v1      91961 24 -   1411461 I
e canFam3.chr35            26284688 1101 +  26524999 I
e saiBol1.JH378341           189162 2628 +    515838 I
e aotNan1.NW_018496904v1     308903 1010 -    383796 I

a score=71190.000000
s hg38.chr6_GL000254v2_alt  1405564 13 +   4827813 ACTCTTC-TCTCTT
s panTro5.chr6             30279006  9 + 175400573 ACTC-----CTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30509557 13 + 173848474 ACTCTTC-TCTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     216424 13 +   2037526 ACTCTTC-TCTCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74889453 13 + 122973662 ACTCTTC-TCTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762955 13 + 172585720 ACTCTTC-TCTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30058098 13 - 170955103 ACTCTTC-TCTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     307386 13 +   1495729 ACTCTTC-TCTCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     405303 13 -    863181 ACTCTTC-TCTCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29557340 13 -  71996105 ACTCTTC-TCTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239944 13 -    735854 ACTCTTC-TCTCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     195374 13 -   1829203 AGTCTTC-TCTCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30367620 11 + 171630274 ATTCCTC-TCTT--
i calJac3.chr4             C 0 I 1
s cebCap1.NW_016107755v1     823631 11 -   1771730 ATTCCTC-TCTC--
i cebCap1.NW_016107755v1   C 0 I 3
s proCoq1.NW_012149775v1      91985 13 -   1411461 ACTCCTC-TCTCTT
i proCoq1.NW_012149775v1   I 24 C 0
s otoGar3.GL873550           235230 14 +  18854210 GCGGGTCTTCTATT
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               58028938 10 -  94987271 -ATCCTG-TGCC--
i mm10.chr17               C 0 C 0
s dasNov3.JH569887            12428 11 -     22419 ACCCCTC-TCTT--
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               288041 71 + 123392446 I
e canFam3.chr35            26284688 1101 +  26524999 I
e saiBol1.JH378341           189162 2628 +    515838 I
e aotNan1.NW_018496904v1     308903 1010 -    383796 I

a score=113661.000000
s hg38.chr6_GL000254v2_alt  1405577 9 +   4827813 TTGTTAATA
s panTro5.chr6             30279015 9 + 175400573 TTGTTAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30509570 9 + 173848474 TTGTTAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     216437 9 +   2037526 TTGTTAATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74889466 9 + 122973662 TTGTTAATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762968 9 + 172585720 TTGTTAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30058111 9 - 170955103 TTGTTAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     307399 9 +   1495729 TTGTTAATA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     405316 9 -    863181 TTGTTAATA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29557353 9 -  71996105 TTGTTAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239957 9 -    735854 TTGTTAATA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     195387 9 -   1829203 TTGTTAATA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30367632 9 + 171630274 TTGTTAATA
i calJac3.chr4             I 1 I 1
s saiBol1.JH378341           191790 9 +    515838 TTGTTTATA
i saiBol1.JH378341         I 2628 I 1
s cebCap1.NW_016107755v1     823645 9 -   1771730 TTGTTAATA
i cebCap1.NW_016107755v1   I 3 I 1
s proCoq1.NW_012149775v1      91998 9 -   1411461 TTGTTAATG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           235244 9 +  18854210 GTGTTAATA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58028948 9 -  94987271 TTAATAATA
i mm10.chr17               C 0 C 0
s dasNov3.JH569887            12439 9 -     22419 CTGTGGGTG
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               288041 71 + 123392446 I
e canFam3.chr35            26284688 1101 +  26524999 I
e aotNan1.NW_018496904v1     308903 1010 -    383796 I

a score=274897.000000
s hg38.chr6_GL000254v2_alt  1405586 24 +   4827813 AACTTCCAACTCCCTCCTCAGACC
s panTro5.chr6             30279024 24 + 175400573 AACTTCCAACTCCCTCCTCAGACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30509579 24 + 173848474 AACTTCCAACTCCCTCCTCAGACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     216446 24 +   2037526 AACTTCCAACTCCCTCCTCAGACC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74889475 24 + 122973662 AACTTCCAACTCCCTCCTCAGACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30762977 24 + 172585720 AACTTATAACTCCCTTCTCAGACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30058120 24 - 170955103 AACTTCTAACTCCCTTCTCAGACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     307408 24 +   1495729 AACTTCTAACTCCCTCCTCAGACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     405325 24 -    863181 AACTTCTAACTACCTCCTCAGACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29557362 24 -  71996105 AACTTCTAACTCCCTCCTCAGACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239966 24 -    735854 AACTTCTAACTCCCTCCTCAGACC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     195396 24 -   1829203 AACTTCCAACTCCTTCCTCAGACC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30367642 24 + 171630274 AACTTCTAACTCCCTCTTCAGGCC
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           191800 24 +    515838 AACTTCTAACTCCCTCCTCAGACC
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     823655 24 -   1771730 AACTTCTAACTCCCTCCTCAGACC
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496904v1     309913 24 -    383796 AACTTCTAACTCCCTCCTCAGACC
i aotNan1.NW_018496904v1   I 1010 C 0
s proCoq1.NW_012149775v1      92007 24 -   1411461 AACTTCTCATTCCCTTTCTAGCTC
i proCoq1.NW_012149775v1   C 0 I 1
s otoGar3.GL873550           235253 24 +  18854210 AACTTTACTTTATCTTTTCAGTTC
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58028957 14 -  94987271 AAC-----ACTCCTCTTTC-----
i mm10.chr17               C 0 C 0
s dasNov3.JH569887            12448 23 -     22419 -GTTTCTCGGCCCCTGCCCACCCT
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               288041 71 + 123392446 I
e canFam3.chr35            26284688 1101 +  26524999 I

a score=140956.000000
s hg38.chr6_GL000254v2_alt  1405610 13 +   4827813 CGACCGCATGTCT
s panTro5.chr6             30279048 13 + 175400573 CGACCGCATGTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30509603 13 + 173848474 CGACCGCATGTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     216470 13 +   2037526 CGACCGCGTGTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74889499 13 + 122973662 AGACCGCATGTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30763001 13 + 172585720 CGACTGCATGTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30058144 13 - 170955103 CGACTGCATGTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     307432 13 +   1495729 CGACTGCATGTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     405349 13 -    863181 CGACTGCATGTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29557386 13 -  71996105 CGACTGCATGTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     239990 13 -    735854 CGACTGCATGTCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     195420 13 -   1829203 CGACTGCATGTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30367666 13 + 171630274 TGACCGCATATGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           191824 13 +    515838 TGACCGCCTGTGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     823679 13 -   1771730 TGACCGCACGTGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     309937 13 -    383796 TGACCGCATGTGC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               288112 13 + 123392446 CCGCTGCATGTCG
i micMur3.chr6             I 71 C 0
s proCoq1.NW_012149775v1      92032 13 -   1411461 CTGCTGCATGTCG
i proCoq1.NW_012149775v1   I 1 C 0
s otoGar3.GL873550           235278 13 +  18854210 CGACTGGATATCG
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58028971 13 -  94987271 CCAGCTCTCATCC
i mm10.chr17               C 0 C 0
s dasNov3.JH569887            12471 13 -     22419 CGACCACCCGTCC
i dasNov3.JH569887         C 0 C 0
e canFam3.chr35            26284688 1101 +  26524999 I

a score=3482022.000000
s hg38.chr6_GL000254v2_alt  1405623 201 +   4827813 GTCATGGACCTCGCCAATACTTGCTCCAGCTTTCAGTCGGACCTGGATTTCTGTTCAGATTGCGGCTCGGTCCTGCCTCTGCCCGGGGCTCAGGATACGGTCACCTGTATTCGCTGTGGCTTCAACATCAACGTTCGGGGTGAGAGGCTTGTACG------CAGGGGTCCTGGCGG-AGGGCGCAGGGTCGGAAGCTT-GGGGAACTCA
s panTro5.chr6             30279061 201 + 175400573 GTCATGGACCTCGCCAATACTTGCTCCAGCTTTCAGTCGGACCTGGATTTCTGTTCAGATTGCGGCTCGGTCCTGCCTCTGCCCGGGGCTCAGGATACGGTCACCTGTATTCGCTGTGGCTTCAACATCAACGTTCGGGGTGAGAGGCTTGTACG------CAGGGGTCCTGGCGG-AGGGCGCAGGGTCGGAAGCTT-AGGGAACTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30509616 201 + 173848474 GTCATGGACCTCGCCAATACTTGCTCCAGCTTTCAGTCGGACCTGGATTTCTGTTCAGATTGCGGCTCGGTCCTGCCTCTGCCCGGGGCTCAGGATACGGTCACCTGTATTCGCTGTGGCTTCAACATCAACGTTCGGGGTGAGAGGCTTGTACG------CAGGGGTCCTGGCGG-AGGGCGCAGGGTCGGAAGCTT-GGGGAACTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     216483 201 +   2037526 GTCATGGACCTCGCCAATACTTGCTCCAGCTTTCAGTCGGACCTGGATTTCTGTTCAGATTGCGGCTCGGTCCTGCCTCTGCCCGGGGCTCAGGATACGGTCACCTGTATTCGCTGTGGCTTCAACATCAACGTTCGGGGTGAGAGGCTTGTACG------CAGGGGTCCCGGCGG-AGGGCGCAGGGTCGGAAGCTT-GGGGAACTCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74889512 201 + 122973662 GTCATGGACCTCGCCAGTACTTGCTCCAGCTTTCAGTCGGACTTGGATTTCTGTTCAGATTGCGGCTCGGTCCTGCCTCTGCCCGGGGCTCAGGATACGGTCACCTGTACTCGCTGTGGCTTCAACATCAACGTTCGGGGTGAGAGGCTTGTACG------CAGGGGTCCTGGCGG-AGGGCCCAGGGTCGGAAGCTT-GGGGAACTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30763014 201 + 172585720 GTCATGGACCTCGCCGGTACTTGCTCCAGCTTTCAGTCGGACTTGGATTTCTGTTCAGATTGCGGCTCGGTCCTGCCTCTGCCCGGGGCTCAGGATACGGTCACCTGTACTCGCTGTGGCTTCAACATCAACGTTCGGGGTGAGAGGCTTGTACA------CAGGGGTCCTGGCGG-AGGGCCCAGGATCGGAAGCTT-GGGGAACTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30058157 201 - 170955103 GTCATGGACCTCGCCGGTACTTGCCCCAGCTTTCAGTCGGACTTGGATTTCTGTTCAGATTGCGGCTCGGTCCTGCCTCTGCCCGGGGCTCAGGATACGGTCACCTGTACTCGCTGTGGCTTCAACATCAACGTTCGGGGTGAGAGGCTTGTACA------CAGGGGTCCTGGCGG-AGGGCCCAGGATCGGAAGCTT-GGGGAACTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     307445 201 +   1495729 GTCATGGACCTCGCCGGTACTTGCTCCAGCTTTCAGTCGGACTTGGATTTCTGTTCAGATTGCGGCTCGGTCCTGCCTCTGCCCGGGGCTCAGGATACGGTCACCTGTACTCGCTGTGGCTTCAACATCAACGTTCGGGGTGAGAGGCTTGTACA------CAGGAGTCCTGGCGG-AGGGCCCAGGATCGGAAGCTT-GGGGAACTCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     405362 201 -    863181 GTCATGGACCTCGCCGGTACTTGCTCCAGCTTTCAGTCGGACTTGGATTTCTGTTCAGATTGCGGCTCGGTCCTCCCTCTGCCCGGGGCTCAGGATACGGTCACCTGTACTCGCTGTGGCTTCAACATCAACGTTCGGGGTGAGAGGCTTGTACG------CAGGGGTCCTGGCGG-AGGGCCCAGGATCGGAAGCTT-GGGGAACTCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29557399 201 -  71996105 GTCATGGACCTCGCCGGTACTTGCTCCAGCTTTCAGTCGGACTTGGATTTCTGTTCAGATTGCGGCTCGGTCCTGCCTCTGCCCGGGGCTCAGGATACGGTTACCTGTACTCGCTGTGGCTTCAACATCAACGTTCGGGGTGAGAGGCTTGTACG------CAGGGGTCCTGGCGG-AGGGCCCAGGATCGGAAGCTT-GGGGAACTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     240003 201 -    735854 GTCATGGACCTCGCCGGTACTTGCTCCAGCTTTCAGTCGGACTTGGATTTCTGTTCAGATTGCGGCTCGGTCCTGCCTCTGCCCGGGGCTCAGGATACGGTTACCTGTACTCGCTGTGGCTTCAACATCAACGTTCGGGGTGAGAGGCTTGTACG------CAGGGGTCCTGGCGG-AGGGCCCAGGATCGGAAGCTT-GGGGAACTCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     195433 201 -   1829203 GTCATGGATCTCGCCAGTACTTGCTCCAGCTTTCAGTCGGACTTGGATTTCTGTTCAGATTGCGGCTCGGTCCTGCCTCTGCCCGGGGCTCAGGATACGGTCACCTGTACTCGCTGTGGCTTCAACATCAACGTTCGGGGTGAGAGGCTTGTACG------CAGGGGTCTTGGCGG-AGGGCCCAGGATCGGAAGCTT-GGGGAACTCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30367679 201 + 171630274 GTCATGGACCTAGCCAGCACTTGCTCCAGCTTTCAGTCGGACTTGGATTTCTGTTCAGAGTGCGGCTCGGTCCTGCCTCTGCCAGGGGCTCAGGATACGGTTACCTGTACTCGCTGTGGCTTCAACATCAACGTTCGGGGTGAGAGGCTTGTACG------CAGTGGTCCTGGCGG-AGGGTCCAGGGTCGGAAACTT-GGGGACCTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           191837 201 +    515838 GTCATGGACCTCGCCAGCACTTGCTCCAGCTTCCAGTCGGACTTGGATTTCTGTTCGGAGTGCGGTTCGGTCCTGCCTCTGCCGGGGGCTCAGGACACGGTTACCTGTCCTCGCTGTGGCTTCAACATCAACGTGCGGGGTGAGAGGCTTGTACG------CAGTGGTCCTGGCGG-AGGGCCCAGGGTCGGAAACTT-GGGGACCTCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     823692 201 -   1771730 GTCATGGACCTCGCCAGCACTTGCTCCAGCTTTCAGTCGGACTTGGATTTCTGTTCGGAGTGCGGCTCGGTCCTGCCTCTGCCGGGGGCTCAGGATACGGTTACCTGTACGCGCTGTGGCTTCAACATCAACGTTCGGGGTGAGAGGCTTGTACG------CAGTGGTCCTGGCGG-AGGGCCCAGGGTCGGAAACTT-GGGGACCTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     309950 202 -    383796 GTCATGGACCTCGCCAGCACTTGCTCCAGCTTTCAGTCGGACTTGGATTTCTGTTCAGAGTGTGGCTCGGTCCTGCCTCTGCCGGGGGCTCAGGATACGGTTACCTGTACTCGCTGTGGCTTCAACATCAACGTTCGGGGTGAGAGGCTTGTACG------CAGTGGTCCTGGCGG-AGGGCCCAGGGTCGGAAACTTGGGGGACCTCA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               288125 200 + 123392446 GTCATGGACCTCGCCAGCACCTGCTCCAGCTTTCAGTCCGACTTGGATTTCTGTCCAGATTGCGGCGCGGTCCTGCCTCTGCCCGGGGCTCAGGATGCGGTCACCTGTACTCGCTGCGGCTTCGCCATCAGCGTTCGGGGTGAGGGGCTTGTACG------CCGT-GCCCTGGCGG-CGGGCCCAGGGTCGGAGGCCG-GGAGACCTCA
i micMur3.chr6             C 0 I 40
s proCoq1.NW_012149775v1      92045 201 -   1411461 GTCATGGACCTCGCCAGCACCTGCTCCAGCTTTCAGTCGGACTTGGATTTCTGTCCAGACTGCGGCTCGGTCCTGCCTCTACCCGGGGCTCAGGATGCGGTCACCTGTACTCGCTGCGGCTTCTCCATCAACGTTCGGGGTGAGGGGCTCGTACG------CCGTGGTCCTGGCGG-AGGGCCCAGGGTCGGAGGCTG-GGGGACCTCA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           235291 201 +  18854210 GTCATGGACCGCGCCAGCACCTGCTCCAGCTTTCAGTCAGACTTGGATTTTTGTCCAGATTGCGGCTCGGTCCTGCCTCTGCCGGGAGCTCAGGATGCAGTCACCTGTACCCGTTGCGGCTTCTCCATCAACGTTCGAGGTGAGGGGTTTGTAGG------CAGTGATCTTGGAGG-AGTGCCCAGGGTGGGAGGCTT-CGGGACCTCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58028984 202 -  94987271 GCCATGGAGCTGGCCCGCCCCCGCTCCAACTTTCAATCAGACTTGGATTTCTGCCCAGATTGTGGCTCAGTCCTGCCGCTGCCTGGAATTCAGGACACTGTCATATGTTCGCGTTGTGGCTTCTCCATCGATGTGCGAGGTAAGGAGCTGGTATGCTCAGCCAAGAGTGCGGGTGGAAGGGTCTACGGTGGG-------GGTGACCTCA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26285789 155 +  26524999 GCCATGGACCCCGCGCCCTCCGGCTCCAGATTCCAGTCGGACCTGGACTTCTGTCCGGACTGCGGCTCCGTCCTGCCCCTGCCCGGGGCCCAGGACGCGGTCACCTGTGTGCGCTGTGGCTTCGGCGTCCCCGTGCGGGGTGAG-----------------GAGGG-----GGCGG-G-------------------------------
i canFam3.chr35            I 1101 C 0
s dasNov3.JH569887            12484 188 -     22419 ATCATGGATCCCGCCGAGACCGGCTCCAGCTTCCAGTCGGACCTCGACTTCTGCCCGGACTGCGGCTCGGTGCTGCCTCTGCCCGGGGCTCAGGATTCGGTCATCTGCACTCGCTGTGGCCTCTCCATCAACGTGCGGGGTGAGGGGCTCGCGGG------CA---GTCCCGGCGG-AGGGTCGGGG----------T-GGGGGCCTCC
i dasNov3.JH569887         C 0 C 0

a score=444904.000000
s hg38.chr6_GL000254v2_alt  1405824 42 +   4827813 AGATCGGTTGGGT-TGAG-GAGGGGA--------------TCCT-AGAGCAGGACATCA
s panTro5.chr6             30279262 42 + 175400573 AGATCGGTTGGGT-TGAG-GAGGGGA--------------TCCT-AGAGCAGGACATCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30509817 42 + 173848474 AGATCGGTTGGGT-TGAG-GAGGAGA--------------TCCT-AGAGCAGGACATCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     216684 42 +   2037526 AGATCGGTTGGGT-TGAG-GAGGGGA--------------TCCT-AGAGCAGGACATCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74889713 42 + 122973662 AGATCGGTTGGGT-TGAG-GAGGGGA--------------TCCT-AGAGCAGGACATCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30763215 42 + 172585720 AGATCGGTTGGGT-TGAG-AAGGGGA--------------TCCT-AGAGCAGGACATCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30058358 42 - 170955103 AGATCGGTTGGGT-TGAG-AAGGGGA--------------TCCT-AGAGCAGGACATCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     307646 42 +   1495729 AGATCGGTTGGGT-TGAG-AAGGGGA--------------TCCT-AGAGCAGGACATCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     405563 42 -    863181 AGATCGGTTGGGT-TGAG-AAGGGGA--------------TCCT-AGAGCAGGACATCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29557600 42 -  71996105 AGATCGGTCGGGT-TAAG-GAGGGGA--------------TCCT-AGAGCAGGACATCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     240204 42 -    735854 AGATCGGTTGGGT-TGAG-GAGGGGA--------------TCCT-AGAGCAGGACATCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     195634 42 -   1829203 AGATCGGTTGGGT-TGAG-GAGGGGA--------------TCCT-AAAGCAGGACATCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30367880 32 + 171630274 AGATCGGC------------AGGGGA--------------CCCT-AGAGCAGGAGATCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           192038 42 +    515838 AGATCGGCTGGGT-TCGG-GAGGGGA--------------CCCT-AGAGCAGGAGATCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     823893 42 -   1771730 AGATCGGTTGGGT-TCGG-GAGGGGA--------------CCCT-AGAGCAGGAGATCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     310152 42 -    383796 AGATCGGTTGGGT-TCGG-TAGGGGA--------------CCCT-AGAGCAGGAGATCA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      92246 57 -   1411461 AGATCGGTTGGACTTGGg-gaggaggggcctggagcaggagcct-ggagcaggagGTCA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           235492 42 +  18854210 AGATCGGTGGGAC-TGGG-GTGGAGG--------------CCAT-AGAGCAGGAGGTGA
i otoGar3.GL873550         C 0 I 3
s mm10.chr17               58029186 39 -  94987271 GGACCGGTTGGGC-TTAGCGAGGTGA--------------GACTGAGAACAGGA-----
i mm10.chr17               C 0 C 0
s canFam3.chr35            26285944 20 +  26524999 --AGCGGCCGGGT-TGCG-GGGGG-----------------------------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            12672 34 -     22419 -AGGCGGGCGGGC-TGTG-GAGGGG---------------TCCA-------GGCGATCA
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               288325 40 + 123392446 I

a score=1012041.000000
s hg38.chr6_GL000254v2_alt  1405866 83 +   4827813 GGCGGTTGTACATT-----TGGTCTAGCGATGAAAACTGAGGGA----AAGGATGTAGGGCCTCCTGGCCTAACCAGCCAGGGGAAAGGGGA
s panTro5.chr6             30279304 83 + 175400573 GGCGGTTGTACATT-----TGGTCTAGCGATGAAAACTGAGGGA----AAGGATGTAGGGCCTCCTGGCCTAACCAGCCAGGGGAAAGGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30509859 83 + 173848474 GGCGGTTGTACATT-----TGGTCTAGCGATGAAAACTGAGGGA----AAGGATGTAGGGCCTCCTGGCCTAACCAGCCAGGGGAAAGGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     216726 83 +   2037526 GGCGGTTGTACATT-----TGGTCTAGCGATGAAAACTGAGGGA----AAGGATGTAGGGCCTCCTGGCCTAACCAGCCAGGGGAAAGGGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74889755 83 + 122973662 GGCAGTTGTACATT-----TGGTCTAGCGGTGAAAACTGAGGGA----AAGGATATAGGGCCTCCTGGCCTAATCAGCCAGGGGAAAGGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30763257 83 + 172585720 GGCAGTTGTACATT-----TGGTCCAGCGATGAAAACTGAGGGA----AAGGATATAGGGCCTCCTGGCCTAACCAGCCAGGGGAGAGGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30058400 83 - 170955103 GGCAGTTGTACATT-----TGGTCCAGCGATGAAAACTGAGGGA----AAGGATATAGGGCCTCCTGGCCTAACCAGCCAGGGGAGAGGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     307688 83 +   1495729 GGCAGTTGTACATT-----TGGTCCAGCGATGAAAACTGAGGGA----AAGGATATAGGGCCTCCTGGCCTAACCAGCCAGGGGAGAGGGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     405605 83 -    863181 GGCAGTTGTACATT-----TGGTCCAGCGATGAAAACTGAGGGA----AAGGATATAGGGCCTCCTGGCCTAACCAGCCAGGGGAGAGGGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29557642 83 -  71996105 GGCAGTTGTACATT-----TGGTCCAGCGATGAAAACTGAGGGA----AAGGATATAGGGCCTCCTGGCCTAACCAGCCAGGGGAGAGGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     240246 83 -    735854 GGCAGTTGCACATT-----TGGTCCAGCGATGAAAACTGAGGGA----AAGGATATAGGGCCTCCTGGCCTAACCAGCCAGGGGAGAGGGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     195676 83 -   1829203 GGCAATTGTACATT-----TAGTCTAGCGATGAAAACTAAGGGA----AAGGATATAGGGCCTCCTGGCCTAACCAGCCAGGGGAGAGGGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30367912 83 + 171630274 GGCAATTGTACATT-----TGGTCTCGAGATGAAAAATGAAGGA----AAGGATATAGGGCTTCCTGGCCTAACCAGTCAGGGGAAAGGGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           192080 88 +    515838 GACAATTGTACGTTTGGTCTGGTCTAGAGATGAAAAATGAAGGA----AAGGATATAGGGCTTCCTGGCCTAACCAGCCAGGGGAGAGGGGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     823935 83 -   1771730 GGCAATTGTACGTT-----TGGTCTAGAGATGAAAAATGAAGGA----AAGGATATAGGGCTTCCTGGCCTAACCAGCCAGGGGAGAGGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     310194 83 -    383796 GGCAATTGTACATT-----TGGTCTCGAGATGAAAAATGAAGGA----AAGGATATAGGGCTTCCTGGCCTAACCAGCCAGGGGAGAGGGGA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               288365 80 + 123392446 GGCACTCGTGTATC-----TGGTCTAGGGACGAAACCCGAAGGG----AAGGAGGTAGAGCCTCCTGGCCTGATCGGGCGGGAGAGGGG---
i micMur3.chr6             I 40 C 0
s proCoq1.NW_012149775v1      92303 82 -   1411461 GGCACTCGTATATT-----TGGTCTAGGGACGAAA-CCGAAGGG----AAGGGAGTAGAGCCTCCTGGCCTAATCCGGAGGGAGAGAGGGGA
i proCoq1.NW_012149775v1   C 0 I 37
s otoGar3.GL873550           235537 82 +  18854210 GACAATAGTACGTT-----TGGTTTA-GGACAAAACCTGAAGGA----AAGGATTTAGGGCCTCCTGGCATAAACAGGGGAATGAGAGGGGA
i otoGar3.GL873550         I 3 C 0
s mm10.chr17               58029225 52 -  94987271 -----------ATC-----TG--TCAGCGAGAGACATTGGGAAG----AAACCGATGAGAC------GCCT----------GGGAGAGTG--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26285964 10 +  26524999 --------------------------------------------------------------------------CGGCGGGGGG--------
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            12706 70 -     22419 GGCGCTCGTACGTT-----TG-TCCAGAGGCGAGACCTGAGGGGACTCAGGTATGCGCGACCTCCTGGCCTAACCA----------------
i dasNov3.JH569887         C 0 C 0

a score=389815.000000
s hg38.chr6_GL000254v2_alt  1405949 43 +   4827813 GGTTTCCGGTGTCAGCT--CTCTCTGGTTGTCTCCA---TAACCAGTT
s panTro5.chr6             30279387 43 + 175400573 GGTTTCCGGTGTCAGCT--CTCTCTGGTTGTCTCCA---TAACCAGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30509942 42 + 173848474 GGTTTCCGG-GTCAGCT--CTCTCTGGTTGTCTCCA---TAACCAGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     216809 43 +   2037526 GGTTTCCGGTGTCAGCT--CTCTCTGGTTGTCTCCA---TAACCAGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74889838 43 + 122973662 GGTTTCTGGTGTCAGCT--CTCTCTGGTTGTCTCCA---TAACCAGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30763340 42 + 172585720 AGTTTCCGGTGTCAGCT--CCCTCAGGTTGTCTCCA---TAACCCG-T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30058483 42 - 170955103 AGTTTCCGGTGTCAGCT--CCCTCAGGTTGTCTCCA---TAACCAG-T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     307771 42 +   1495729 AGTTTCCGGTGTCAGCT--CCCTCAGGTTGTCTCCA---TAACCAG-T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     405688 42 -    863181 AGTTTCCGGTGTCAGCT--CCCTCAGGTTGTCTCCA---TAACCCG-T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29557725 42 -  71996105 AGTTACCAGTGTCAGCT--CCCTCTGGTTGTCTCCA---TAACCCG-T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     240329 42 -    735854 AGTTTCCGGTGTCAGCT--CCCTCAGGTTGTCTCCA---TAACCCG-T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     195759 42 -   1829203 AGTTTCCGGTGTCAGCT--CCCTCTGGTTGTCTCTG---TAACCAG-T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30367995 43 + 171630274 GGTTTCCGGTGTCAGCT--CCCTCTGGTTGTCTCCA---TAACCAGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           192168 42 +    515838 GGTTTCCGGTGTCAGCT--CCCTCTGGTTGTC-CCG---TAACCAGTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     824018 43 -   1771730 GGTTTCCGGTGTCAAAT--CCCTCTGGTTGTCTCCG---TAACCAGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     310277 43 -    383796 GGTTTCCGGTGTCAGCT--CCCTCTGGTTGTCTCCA---TAACCAGTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               288445 42 + 123392446 GATTTCGGGCGTCGGCTA-CCCTACGCTTGTCTCCA-----AGCAGTT
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           235619 42 +  18854210 GATTACAGGGATCAGCT--CCCTAGCCTTATCTCCA---C-AACAGTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58029277 46 -  94987271 --TTGCTGGGATTCGTTGCCTCTTTTGCTGTTTCTACTGTTATTACTT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26285974 23 +  26524999 ----------------------TCCGGGGGTGCCCG---CAGCCAGCG
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            12776 22 -     22419 -----------------------CCGCGTGTCTCCA---CCAACGGTT
i dasNov3.JH569887         C 0 C 0
e proCoq1.NW_012149775v1      92385 37 -   1411461 I

a score=7591119.000000
s hg38.chr6_GL000254v2_alt  1405992 455 +   4827813 CTTACTTGCCTGTGCAGACTTTGAGGGGAAGGTTGTGAAGACTTCGGTTGTGTTCCACCAACTGGGGACAGCCATGCCTATGTCGGTGGAGGAAGGGCCTGAGTGCCAGGGACCTGTGGTAAGCTAATGAGATCAAGAACTGGCTCCATAAGGTGGGTAGGAAAGAAATGG----AGGAGT-------------------------------------------------------------------------GATTGC--------------------------------------------------------------------------------------------AAAGCTCTGGAGAGT-TTTGTGCCCAATTCCAAGAGGGAAAAGAGATGT--AAACCATCGACGTTTGAGAG-GCGTGATCGCCTGATTCCTGTGGGAAGTAAGGG-------GATATGACCAGGCCTCCCTAACCCACCAGTTTCTTCCCAGGTTGACAGGCGCTGCCCTCGATGTGGTCATGAAGGAATGGCATACCACACCAGACAGATGCGTTCAGCCGATGAAGGGCAAACTGTCTTCTACACCTGTACCAACTGCAAGTGGGTATTCTTTC---CCCTCCC-----
s panTro5.chr6             30279430 455 + 175400573 CTTACTTGCCTGTGCAGACTTTGAGGGGAAGGTTGTGAAGACTTCGGTTGTGTTCCACCAACTGGGGACAGCCATGCCTATGTCGGTGGAGGAAGGGCCTGAGTGCCAGGGACCTGTGGTAAGCTAATGAGATCAAGAACTGGCTCCATAAGGTGGGTAGGAAAGAAATTG----AGGAGT-------------------------------------------------------------------------GATTGC--------------------------------------------------------------------------------------------AAAGCGCTGGAGAGT-TTTGTGCCCAATTCCAAGAGGGAAAAGAGATGT--AAACCATCGACGTTTGAGAG-GCGTGATCGCCTGATTCCTGTGGGAAGTAAGGG-------GATATGACCAGGCCTCCCTAACCCACCAGTTTCTTCCCAGGTTGACAGGCGCTGCCCTCGATGTGGTCATGAAGGAATGGCATACCACACCAGACAGATGCGTTCAGCCGATGAAGGGCAAACTGTCTTCTACACCTGTACCAACTGCAAGTGGGTATTCTTTC---CCCTCCC-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30509984 455 + 173848474 CTTACTTGCCTGTGCAGACTTTGAGGGGAAGGTTGTGAAGACTTCGGTTGTGTTCCACCAACTGGGGACAGCCATGCCTATGTCGGTGGAGGAAGGGCCTGAGTGCCAGGGACCTGTGGTAAGCTAATGAGATCAAGAACTGGCTCCATAAGGTGGGTAGGAAAGAAATGG----AGGAGT-------------------------------------------------------------------------GATTGC--------------------------------------------------------------------------------------------AAAGCTCTGGAGAGT-TTTGTGCCCAATTCCAAGAGGGAAAAGAGATGT--AAACCATCGACGTTTGAGAG-GCGTGATCGCCTGATTCCTGTGGGAAGTAAGGG-------GATATGACCAGGCCTCCCTAACCCACCAGTTTCTTCCCAGGTTGACAGGCGCTGCCCTCGATGTGGTCATGAAGGAATGGCATACCACACCAGACAGATGCGTTCAGCCGATGAAGGGCAAACTGTCTTCTACACCTGTACCAACTGCAAGTGGGTATTCTTTC---CCCTACC-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     216852 455 +   2037526 CTTACTTGCCTGTGCAGACTTTGAGGGGAAGGTTGTGAAGACTTCGGTTGTGTTCCACCAACTGGGGACAGCCATGCCTATGTCGGTGGAGGAAGGGCCTGAGTGCCAGGGACCTGTGGTAAGCTAATGAGATCAAGAACTGGCTCCATAAGGTGGGTAGGAAAGAAATGG----AGGAGT-------------------------------------------------------------------------GATTGC--------------------------------------------------------------------------------------------AAAGCTCTGGAGAGT-TTTGTGCCCAATTCCAAGAGGGAAAAGAGATGT--AAACCATCGACGTTTGAGAG-GCGTGATCGCCTGATTCCTGTGGGAAGTAAGGG-------GATATGACCAGGCCTCCCTAACCCACCAGTTTCTTCCCAGGTTGACAGGCGCTGCCCTCGATGTGGTCATGAAGGAATGGCATACCACACCAGACAGATGCGTTCAGCCGATGAAGGGCAAACTGTCTTCTACACCTGTACCAACTGCAAGTGGGTATTCTTTC---CCCTCCC-----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74889881 454 + 122973662 CTTACTTGCCTGTGCAGACTTTGAGGGGAAGGTTGTGAAGACTTCAGTTGTGTTCCACCAACTGGGGACAGCCATGCCTATGTCGGTGGAGGAAGGGCCTGAGTGCCAGGGACCTGTGGTAAGTTAATGAGATCAAGAACTGGCTCCATAAAGTGGGTAGGAAAGAAATGG----AGGAGT-------------------------------------------------------------------------GACTGC--------------------------------------------------------------------------------------------AAAGCTCTGGAGAGT-TTTGTGCCCAATTCCAAGAGGGAAAAGAGATGT--AAAGCATCGATGTTTGAGAG-GCGTGATCGCCTGATTCCTGTGGGAAGTAAGGG-------GATATGACCAGGCCT-CCTAACCCACCAGTTTCTTCCCAGGTTGACAGGCGCTGCCCTCGATGTGGTCATGAAGGAATGGCATACCACACCAGACAGATGCGTTCAGCCGATGAAGGGCAAACTGTCTTCTACACCTGTACCAACTGCAAGTGGGTATCCTTTC---CCCTCCC-----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30763382 456 + 172585720 CTTACTTGCCTGTGCAGACTTTGAGGGGAAGGTTGTGAAGACTTCAGTTGTGTTCCACCAACTGGGGACAGCCATGCCTATGTCGGTGGAGGAAGGGCCTGAGTGCCAGGGACCTGTGGTAAGTTAATGAGATCAAGAACTGGCTTCATAAGGTGGGTAGGAAAGAAATGG----AGGAGT-------------------------------------------------------------------------GATTGC--------------------------------------------------------------------------------------------AGAGATCTGGAGAGT-TTTGTGCCCAATTCCAAGTGGGAAA--AGATGT--AAAGCATCGATGTTTGAGAG-GCGTGATCGCCTGATTCCTGTGGGAACTAAGGGT----ATGATATGACCTGGCCTCCATAACCCACCAGTTTCTTCCCAGGTTGACAGGCGCTGCCCTCGATGTGGTCATGAAGGAATGGCATACCACACCAGACAGATGCGTTCAGCCGATGAAGGGCAAACTGTCTTCTACACCTGTACCAACTGCAAGTGGGTATCCTTTC---CCCTCCC-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30058525 456 - 170955103 CTTACTTGCCTGTGCAGACTTTGAGGGGAAGGTTGTGAAGACTTCAGTTGTGTTCCACCAACTGGGGACAGCCATGCCTATGTCGGTGGAGGAAGGGCCTGAGTGCCAGGGACCTGTGGTAAGTTAATGAGATCAAGAACTGGCTCCATAAGGTGGGTAGGAAAGAAATGG----AGGAGT-------------------------------------------------------------------------GATTGC--------------------------------------------------------------------------------------------AGAGATCTGGAGAGT-TTTGTGCCCAATTCCAAGTGGGAAA--AGATGT--AAAGCATCGATGTTTGAGAG-GCGTGATCGCCTGATTCCTGTGGGAACTAAGGGT----ATGATATGACCAGGCCTCCATAACCCACCAGTTTCTTCCCAGGTTGACAGGCGCTGCCCTCGATGTGGTCATGAAGGAATGGCATACCACACCAGACAGATGCGTTCAGCCGATGAAGGGCAAACTGTCTTCTACACCTGTACCAACTGCAAGTGGGTATCCTTTC---CCCTCCC-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     307813 455 +   1495729 CTTACTTGCCTGTGCAGACTTTGAGGGGAAGGTTGTGAAGACTTCAGTTGTGTTCCACCAACTGGGGACAGCCATGCCTATGTCGGTGGAGGAAGGGCCTGAGTGCCAGGGACCTGTGGTAAGTTAATGAGATCAAGAACTGGCTCCATAAGGTGGGTAGGAAAGAAATGG----AGGAGT-------------------------------------------------------------------------GATTGC--------------------------------------------------------------------------------------------AGAGATCTGGAGAGT-TTTGTGCCCAATTCCAAGTGGGAAA--AGATGT--AAAGCATCGATGTTTGAGAG-GCGTGATCGCCTGATTCCTGTGGGAAGTAAGGGT----ATGATATGACCAGGCCTCCATAACCCACCAGTTTCTTCCCAGGTTGACAGGCGCTGCCCTCGATGTGGTCATGAAGGAATGGCATACCACACCAGACAGATGCGTTCAGCCGATGAAGGGCAAACTGTCTTCTACACCTGTACCAACTGCAAGTGGGTATCCTTT----CCCTCCC-----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     405730 456 -    863181 CTTACTTGCCTGTGCAGACTTTGAGGGGAAGGTTGTGAAGACTTCAGTTGTGTTCCACCAACTGGGGACAGCCATGCCTATGTCGGTGGAGGAAGGGCCTGAGTGCCAGGGACCTGTGGTAAGTTAATGAGATCAAGAACTGGCTCCATAAGGTGGGTAGGAAAGAAATGG----AGGAGT-------------------------------------------------------------------------GATTGC--------------------------------------------------------------------------------------------AGAGATCTGGAGAGT-TTTGTGCCCAATTCCAAGTGGGAAA--AGATGT--AAAGCATCGATGTTTGAGAG-GCGTGATCGCCTGATTCCTGTGGGAAGTAAGGGT----ATGATATGACCAGGCCTCCATAACCCACCAGTTCCTTCCCAGGTTGACAGGCGCTGCCCTCGATGTGGTCATGAAGGAATGGCATACCACACCAGACAGATGCGTTCAGCCGATGAAGGGCAAACTGTCTTCTACACCTGTACCAACTGCAAGTGGGTATCCTTTC---CCCTCCC-----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29557767 456 -  71996105 CTTACTTGCCTGTGCAGACTTTGAGGGGAAGGTTGTGAAGACTTCAGTTGTGTTCCACCAACTGGGGACAGCCATGCCTATGTCGGTGGAGGAAGGGCCTGAGTGCCAGGGACCTGTGGTAAGTTAATGAGATCAAGAACTGGCTCCATAAGGTGAGTAGGAAAGAAATGG----AGGAGT-------------------------------------------------------------------------GATTGC--------------------------------------------------------------------------------------------AGAGATCTGGAGAGT-TTTGTGCCCAATTCCAAGTGGGAAA--AGATGT--AAAGCATCGATGTTTGAGAG-GCGTGATCGCCTGATTCCTGTGGGAAGTAAGGGT----ATGATATGACCAGGCCTCCATAACCCACCAGTTTCTTCCCAGGTTGACAGGCGCTGCCCTCGATGTGGTCATGAAGGAATGGCATACCACACGAGACAGATGCGTTCAGCCGATGAAGGGCAAACTGTCTTCTACACCTGTACCAACTGCAAGTGGGTATCCTTTC---CCCTCCC-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     240371 456 -    735854 CTTACTTGCCTGTGCAGACTTTGAGGGGAAGGTTGTGAAGACTTCAGTTGTGTTCCACCAACTGGGGACAGCCATGCCTATGTCGGTGGAGGAAGGGCCTGAGTGCCAGGGACCTGTGGTAAGTTAATGAGATCAAGAACTGGCTCCATAAGGTGGGTAGGAAAGAAATGG----AGGAGT-------------------------------------------------------------------------GATTGC--------------------------------------------------------------------------------------------AGAGATCTGGAGAGT-TTTGTGCCCAATTCCAAGTGAGAAA--AGATGT--AAAGCATCGATGTTTGAGAG-GCGTGATCGCCTGATTCCTGTGGGAAGTAAGGGT----ATGATATGACCAGGCCTCCATAACCCACCAGTTTCTTCCCAGGTTGACAGGCGCTGCCCTCGATGTGGTCATGAAGGAATGGCATACCACACCAGACAGATGCGTTCAGCCGATGAAGGGCAAACCGTCTTCTACACCTGTACCAACTGCAAGTGGGTATCCTTTC---CCCTCCC-----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     195801 453 -   1829203 CTTACTTGCCTGTGCAGACTTTGAGGGGAAGGTTGTGAAGACTTCAGTTGTGTTCCACCAACTGGGGACAGCCATGCCTATGTCGGTGGAGGAAGGGCCTGAGTGCCAGGGACCTGTGGTAAGTTAATGAGATCAAGAACTGGCTCCATAAGGTGAGTAGGAAAGAAATGG----AGGAGT-------------------------------------------------------------------------GATTGC--------------------------------------------------------------------------------------------AGAGATCTGGAGAGT-TTTGTGCCCAATTCCAAGTGGGAAA--AGATGT--AAAGCATCGATGTTTGAGAG-GCGTGATCGCCTGATTCCTGTGGGAAGTAAGGG-------GATATGACCAGGCCTCCATAACCCACCAGTTTCTTCCCAGGTTGACAGGCGCTGCCCTCGTTGTGGTCATGAAGGAATGGCATACCACACCAGACAGATGCGTTCAGCCGATGAAGGGCAAACTGTCTTCTACACCTGTACCAACTGCAAGTGGGTATCCTTTC---CCTTCCC-----
i colAng1.NW_012115577v1   C 0 I 5
s calJac3.chr4             30368038 455 + 171630274 CTTACTTGCCTGTGCAGACTTTGAGGGGAAGGTTGTGAAGACTTCAGTTGTGTTCCACCAGCTGGGGACAGCCATGCCTGTGTCGGTGGAGGAAGGGCCTGAGTTCCAGGGACCTGTGGTAAGTTAATGAGCTCAATGACTGGCTCCATAAGGTGGGTAGGAAAGAAACGG----AGGAAT-------------------------------------------------------------------------GATTGC--------------------------------------------------------------------------------------------AGAGATCTGGAGAGT-TGTGTGCCCAAGTCCAAGAGGGAAAAGAGATGT--AAAGCATCCATGTTTGAGAG-GAGTGATCGCCTGATTCCTGTGGGAAGTGAGGG-------GATATGAACTGGCCTCCCTAACCCACCGGTTTCTTCCCAGGTTGACAGGCGCTGCTCTCGATGTGGTCATGAAGGAATGGCTTACCACACCAGACAGATGCGTTCAGCAGACGAAGGGCAAACTGTCTTCTACACCTGTACCAACTGCAAGTGGGCATCCCTTC---CCCTCCC-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           192210 520 +    515838 CTTACTTCCCTGGGCAGACTTTGAGGGGAAGGTTGTGAAGACTTCAGTTGTATTCCACCAGCTGGGGACAGCCATGCCTGTGTCGGTGGAGGAAGGGCCCGAGTTCCAGGGACCTGTGGTAAGTTAATAAGCTCAAGGACTGGCTCCGTAAGGTGGGTAGGAAAGAAACGG----AGGAGTGGTTGCAGAGATCTGTAGAGTTGTGTGCTCAAGGACTGGTTCCGTAAGGTGGGTAGGAAAGAAACGGAGGAGGGGTTGC--------------------------------------------------------------------------------------------AGAGATCTGTAGAGT-TGTGTGCCCAAGTCCAA----GAAAAGAGATGT--AAAGCATCGATGTTTGAGAG-GAGTGATCGCCTGATTCCTGCGGGAAGTGAGGG-------GATATGACCAGGCCTCCCTAACCCACCAGTTTCTTCCCAGGTTGACAGGCGCTGCTCTCGATGTGGTCATGAAGGAATGGCATACCACACCAGACAGATGCGTTCAGCAGATGAAGGGCAAACTGTCTTCTACACCTGTACCAACTGCAAGTGAGCATCCCTTC-------CCC-----
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     824061 455 -   1771730 CTTACTTGCCTGTGCAGACTTTGAGGGGAAGGTTGTGAAGACTTCAGTTGTGTTCCACCAGCTGGGGACAGCCATGCCTATGTCGGTGGAGGAAGGGCCTGAGTTCCAGGGACCTGTGGTAAGTTAATGAGCTCAAGGACTGGCTCCATAAGGTGGGTAGGAAAGAAACGG----GGGAGT-------------------------------------------------------------------------GATTGC--------------------------------------------------------------------------------------------AGAGATCTGGAGAGT-TGTGTGCCCAATTCCAAGAGGGAAAAGAGATGT--AAAGCATCGATGTTTGAGAG-GAGTGATCGCCTGATTCCTGTGGGAAGTAAGGG-------GATATGACCAGGCCTCCGTAACCCACCAGTTTCTTCCCAGGTTGACAGGCGCTGCTCTCGATGTGGTCATGAAGGAATGGCATACCACACCAGACAGATGCGTTCAGCAGATGAGGGGCAAACTGTCTTCTACACCTGTACCAACTGCAAGTGGGCATCCCTTC---CTCTCCC-----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     310320 455 -    383796 CTTACTTGCCTGTGCAGACTTTGAGGGGAAGGTTGTGAAGACTTCAGTTGTGTTCCACCAGCTGGGGACGGCCATGCCTATGTCGGTGGAGGAAGGGCCTGAGTTCCAGGGACCTGTGGTAAGTTAATGAGCTCAAGGACTGGCTCCATAAGGTGGGTAGGAAAGAAACGG----AGGAGT-------------------------------------------------------------------------GATTGC--------------------------------------------------------------------------------------------AGAGATCTGGAGAGT-TGTGTGCCCAATTCCAAGAGGGAAAAGAGATGT--AAAGCATCGATGTTTGAGAG-GAGTGATCGCCTGATTCCTGTGGGAAGTAGGGG-------GATATGACCAGGCCTGCCTAACCCACCAGTTTCTTCCCAGGTTGACAGGCGCTGCTCTCGATGTGGTCATGAAGGAATGGCATACCACACCAGACAGATGCGTTCAGCAGATGAAGGGCAAACTGTCTTCTACACCTGTACCAACTGCAAGTGGGCATCCCTTC---CCCTCTC-----
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               288487 456 + 123392446 CTTACTTGCCTGCACAGACTTCGAGGGGAAGGTTGTGAAGACTTCAGCTGTGTTCCACAAACTGGGGACAGCCATGCCTGTGTCGGTGGAGGAAGGGCCTGAGTTCCAGGGACCTGTGGTACGTTAATGAGATCAAGGACTGGCTCCATAAGGTGAAT-GGAAAGAAATGG----AGGAGT-------------------------------------------------------------------------GATTGC--------------------------------------------------------------------------------------------GGAGATCTGCAGAGGTTTTTTTCCCCATTCCAAGAAGGAAGAGAAGTGT--GAAGCATCAATATCTGAGGAAGCATGATAGGCTGATTGCTGTGAGAAGTAGGGG-------GACATGACAAGGCCTCCCTGACCCACCGGCTTCTCCCCAGGTTGACAGGCGCTGCTCTCGATGTGGTCATGAGGGAATGGCATACCACACCAGGCAGATGCGTTCAGCCGATGAAGGGCAGACCGTCTTCTACACCTGTACCAACTGCAAGTGGGTATCCTTTC---CCCTCCC-----
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      92422 451 -   1411461 CTTACTTGCCTGCGCAGACTTCGAGGGGAAAGTTGTGAAGACTTCAGCAGTGTTCCACAAACTGGGGACAGCCATGCCTATGTCGGTGGAGGAAGGGCCTGAGTTCCAGGGACCTGTGGTACGTTAATGAGATCAAGGACTGCCTCTGAAAGGTGGGT-AGAAAGAAATGG----AGGAGT-------------------------------------------------------------------------GATTGC--------------------------------------------------------------------------------------------AGAGATCTGGAGAGG-TTTTTTCCCCATTCCAA----GAAGAGAAGTGT--GAAACATCAATATCTGAGGAAGTATGATAGGCTGGTTGCTGTGAGAAGTAGCGG-------GATATGACCAGGCCTCCCTAACCCACCAGCTTCTCCCCAGGTTGACAGGCGCTGCTCTCGATGTGGTCATGAGGGGATGGCATACCACACCAGGCAGATGCGTTCAGCTGATGAAGGGCAGACCGTCTTCTACACCTGTACCAACTGCAAGTGGGTATCCTTTC---CCCTCCC-----
i proCoq1.NW_012149775v1   I 37 C 0
s otoGar3.GL873550           235661 455 +  18854210 CTTACTTGTCTGTACAGACTTTGAGGGGAAAGTTGTGAAGACTTCATTTGTGTTCCACAAACTGGGGACAGCCATGCATATGTCGGTGGAGGAAGGGCCTGAGTTCCAGGGACCTGTGGTAAGTTAATGAGATCAAGGACTGGCTCCATAAAGTGGGT-GAAATGAAATGG----TGGGGT-------------------------------------------------------------------------GATTGC--------------------------------------------------------------------------------------------AGAGATCTAGAGAAT-TTTTTCCCCAATTCCAAGAAGGAAGAGGAGTAT--GAAGCTTCAATATCTAAGAGAGTATGATAGCCAGGTTCCTCTGAGAAGTAGGGT-------GATATGACAAGGCCTCCCTAACCCACCAGTTTCTTTCCAGGTTGACAGGCGCTGCTCTCGATGTGGTCATGAGGGAATGGCATACCACACCAGACAAATGCGTTCAGCTGATGAAGGGCAGACTGTCTTTTACACCTGTACCAACTGCAGGTGAGTATCCTTTC---CCCTCCC-----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58029323 403 -  94987271 TTTACTT-CCTGTGCAGATTGTGAAGGGAAGGTTGTGAAGACCTCAGTAGTGTTCAACAAGCTGGGGGCTACCATACCTTTGTCTGTGGATGAGGGACCTGAATTACAGGGACCAGTGGTAAGTTAAT------AGGGGCCAGCTCCGAAAG-----------AGCAATGG----AAAGGT-------------------------------------------------------------------------GATTCT--------------------------------------------------------------------------------------------GGACACCTG----GT-TTTGCACTCCATTCCAGGAG-----------------------AATGTCCAAGGA---------GTCTGATTTCTGTACAGAAAGCAGA-------GACAAGACCAGGTCTCCATAACCCTTCTGTCTCTTCCTAGATTGACAGGCGCTGCCCTCGATGTGGTCACGAGGGAATGGCATATCACACCAGACAGATGCGCTCAGCTGATGAAGGACAGACGGTCTTCTATACCTGTATCAACTGCAAGTGAGAAT-ATTTC---CCCTCCC-----
i mm10.chr17               C 0 C 0
s canFam3.chr35            26285997 548 +  26524999 CTTACCG--CTCCGCAGACTTCGAGGGGAAGGTGGTGAGGACCCGCATCGTGTTCAACCAGGTGGGGACGGCGGTGCCCGCGCCGGTGCAGGAGGAGCCGGAGCTCCAGGGACCCGTGGTGAGTGAGTGA-CCCCAGCACTGAC-CCACAAGGAAGGC-GGGGAGACATGC----AGGGTT-------------------------------------------------------------------------GAGTGCTGAGTCTGGGGTAACGGGTGTGCAGGAGGAGCCCGACCTCCAGCGACCCGTGGTGAGTGAGTGATGCCAACACTGATCCACAGGGAGAGCGGGAAGGGCTGCAGGGT-TGAGTGCTGAGGTCTGGGGAAACAGAGGTCTTT--GGAGCAGGGGTGCTGGGGAGAGCATG-CAACGAGATTCCTGTAGGAAGCAGGGGTCATCCTGGCTTTCCCTGACCCCC----CCCCCCCTTTGGTTGCCAGGTTGACAGGCGCTGCTCCCGATGTGGTCACGAGGGAATGGCCTACCACACCAGACAGATGCGCTCAGCTGACGAGGGGCAGACCGTCTTCTACACCTGCACCAGCTGCAGGTGTGCCCCCTCCCTGGCCCTCTG-----
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            12798 455 -     22419 -CTGCC-GCCCGCGCAGACTTCGAAGGGAAGGTGGTGAAGACCTCCTTTGTGTTCCACAAACTGGGAACAGCCGTGCCTGCGGCGGTGGAGCAAGGACCCGAGTTCCAGGGGCCCGTGGTGAGTAGATGAGGTCAAGGACTGGCTCCGCTAGGGAGACGGGAGAGAAGGGGGGCAGGGGGC-------------------------------------------------------------------------GATTGC--------------------------------------------------------------------------------------------AGAGG-CTGGAGAGC-TTTGTACCCAATTCAGGGAGGGTGGAGGGGTCTTGAGAGCAGAAATGTCTGTGGG---------ATATGATTTCCCCGAGAAGCAGGAA-------GGTATGACCGGGCCTCCCTTACCCACCGATTGTTTCCCAGGTTGACAGACGCTGTCCTCGATGTGGTCATGAGGGAATGGCATACCACACCAGACAGATGCGCTCAGCGGATGAAGGGCAGACTGTCTTCTACACCTGTACCAACTGCAGGTGCGTGTCAGTTC---CCCACCTCTGCC
i dasNov3.JH569887         C 0 C 0

a score=518520.000000
s hg38.chr6_GL000254v2_alt  1406447 41 +   4827813 TCTGC------TCAGTC---TGTTTGCTAAC---TAAACAAATCCAGTGATTT
s panTro5.chr6             30279885 41 + 175400573 TCTGC------TCAGTC---TGTTTGCTAAC---TAAACAAATCCAGTGATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30510439 41 + 173848474 TCTGC------TCAGTC---TGTTTGCTAAC---TAAACAAATCCAGTGATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     217307 41 +   2037526 TCTGC------TCAGTC---TGTTTGCTAAC---TAAACAAATCCAGTGATTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74890335 41 + 122973662 TCTGC------TCAGTC---TGTTTGCTAAC---TAAACAAATCCAGTGATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30763838 44 + 172585720 TTTGC------TCAGTC---TGTTTGCTAACTAATAAACAAATCCAGTGATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30058981 44 - 170955103 TTTGC------TCAGTC---TGTTTGCTAACTAATAAACAAATCCAGTGATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     308268 44 +   1495729 TTTGC------TCAGTC---TGTTTGCTAACTAATAAACAAATCCAGTGATTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     406186 44 -    863181 TTTGC------TCAGTC---TGTTTGCTAACTAATAAACAAATCCAGTGATTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29558223 44 -  71996105 TTTGC------TCAGTC---TGTTTGCTAACTAATAAACAAATCCAGTGATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     240827 44 -    735854 TTTGC------TCAGTC---TGTTTGCTAACTAATAAACAAATCCAGTGATTT
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30368493 41 + 171630274 TCTGC------TCAGTC---TGTTTGCTAAC---TAAACAAATCCAGTGATTC
i calJac3.chr4             C 0 I 2
s saiBol1.JH378341           192730 41 +    515838 TCTGC------TCAGTC---TGTTTGCTAAC---TAAACAAATCCAGTGATTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     824516 41 -   1771730 TCTGC------TCAGTC---TGTTTGCTAAC---TAAACAAATCCAGTGATTC
i cebCap1.NW_016107755v1   C 0 I 2
s aotNan1.NW_018496904v1     310775 41 -    383796 TCTGC------TCAGTC---TGTTTGCTAAC---TAAACAAATCCAGTGATTC
i aotNan1.NW_018496904v1   C 0 I 35
s micMur3.chr6               288943 47 + 123392446 TCTGCCCTGTCTCAGTC---GTTTTGCTAAC---TGAGCAAATCCAGTGACTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      92873 47 -   1411461 TCTGCCCTGTCTCAGTC---CATTTGCTAAC---TAAGCAAACCCAGTGACTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           236116 47 +  18854210 TCTATACTGTGTCAGTC---AGTTTGCTAAC---TAAACAAAGCTAGTAACTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58029726 43 -  94987271 TCTGC------CCAGTTCAGTGCTTGCAAAA----CAACAAAATCAATGACAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26286545 41 +  26524999 CCCTC------TCCCTC---TGGCCCTTAAC---CACACATGTCCTGTGACTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            13253 41 -     22419 TGTTC------TCCAAC---CCCTTGCCGAC---CAAACCCATCCAGTGTCTT
i dasNov3.JH569887         C 0 C 0
e colAng1.NW_012115577v1     196254  5 -   1829203 I

a score=-21738.000000
s hg38.chr6_GL000254v2_alt  1406488 6 +   4827813 A--TTTT-T
s panTro5.chr6             30279926 6 + 175400573 A--TTTT-T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30510480 6 + 173848474 A--TTTT-T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     217348 6 +   2037526 A--TTTT-T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74890376 6 + 122973662 A--TTTT-T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30763882 7 + 172585720 AT-TTTT-T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30059025 6 - 170955103 A--TTTT-T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     308312 6 +   1495729 A--TTTT-T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     406230 6 -    863181 A--TTTT-T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29558267 6 -  71996105 A--TTTT-T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     240871 6 -    735854 A--TTTT-T
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30368536 6 + 171630274 -T-TGTT-G
i calJac3.chr4             I 2 C 0
s saiBol1.JH378341           192771 5 +    515838 ---TGTT-G
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     824559 6 -   1771730 -T-TGTT-G
i cebCap1.NW_016107755v1   I 2 C 0
s micMur3.chr6               288990 6 + 123392446 A--TTTTT-
i micMur3.chr6             C 0 I 1887
s proCoq1.NW_012149775v1      92920 5 -   1411461 A--TTTT--
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           236163 5 +  18854210 A--TTTT--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58029769 6 -  94987271 A--TTTG-T
i mm10.chr17               C 0 C 0
s canFam3.chr35            26286586 5 +  26524999 -C-CCTC--
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            13294 6 -     22419 -GCTGCT--
i dasNov3.JH569887         C 0 C 0
e aotNan1.NW_018496904v1     310816 35 -    383796 I
e colAng1.NW_012115577v1     196254 5 -   1829203 I

a score=279567.000000
s hg38.chr6_GL000254v2_alt  1406494 37 +   4827813 TTGTACG----AAATGG---CCGTTTCCCTTGGTCCCATCCCTT
s panTro5.chr6             30279932 37 + 175400573 TTGTACT----AAATGG---CCGTTTCCCTTGGTCCCATCCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30510486 37 + 173848474 TTGTACT----AAATGG---CCGTTTCCCTTGGTCTCATCCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     217354 37 +   2037526 TTGTACT----AAATGG---CCGTTTCCCTTGGTCCCATCCCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74890382 37 + 122973662 TTGTACT----AAATGG---CCGTTTCCTTTGGTCCCATCCCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30763889 37 + 172585720 TTGTACT----AAACGG---CTGTTTCCTTTCGTCCCATCCCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30059031 37 - 170955103 TTGTACT----AAACGG---CTGTGTCCTTTCGTCCCATCCCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     308318 37 +   1495729 TTGTACT----AAACGG---CTGTTTCCTTTCGTCCCATCCCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     406236 37 -    863181 TTGTACT----AAAGGG---CTGTTTCCTTTCGTCCCATCCCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29558273 37 -  71996105 TTGTACT----AAACGG---CTGTTTCCTTTCGTCCCATCCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     240877 37 -    735854 TTGTACT----AAACGG---CTGTTTCCTTTCGTCCCATCCCTT
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30368542 30 + 171630274 TTGTTCT----AAACCA---CCATTTCCTTTCGTCCC-------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           192776 30 +    515838 TTGTTCT----AAACCA---CTGTTTCCTTTTGTCCC-------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     824565 30 -   1771730 TTGTTCT----AAACCG---CTGTTTCCTTTTGTCCC-------
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1      92925 37 -   1411461 TCGTACT----AGACAG---TTGATTCCTTTCATCCTATCCCTC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           236168 33 +  18854210 TTATACT----AGTCAT-------TTCCTTTCATCCTATCCTTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58029775 25 -  94987271 ----------------A---TTATTTCATTTGGTCCAGTCCATT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26286591 41 +  26524999 TTGTACCCAAGAACCGG---TTATTTCCTTTGGTCCTGTCCTCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            13300 39 -     22419 -TTTACG----AAATGATTTTTTTTTTCTCTGCTCATGTTCCTC
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e aotNan1.NW_018496904v1     310816 35 -    383796 I
e colAng1.NW_012115577v1     196254  5 -   1829203 I

a score=410449.000000
s hg38.chr6_GL000254v2_alt  1406531 40 +   4827813 ATTTCTGTGCAGTTCTGGTAATAGGGAGA-TTTGTAGTTGT
s panTro5.chr6             30279969 40 + 175400573 ATTTCTGTGCAGTTCTGGTAATAGGGAGA-TTTGTAGTTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30510523 40 + 173848474 ATTTCTGTGCAGTTCTGGTAATAGGGAGA-TTTGTAGTTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     217391 40 +   2037526 ATTTCTGTGCAGTTCTGGTAATAGGGAGA-TTTGTAGTTGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74890419 40 + 122973662 ATTTCTGTGCAGTTCTGGTAATAGGGAGA-TTTGTAGTTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30763926 36 + 172585720 ATTTCTGTGCAGTTCTGGTAATAGGGAGA-TTTGTAG----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30059068 36 - 170955103 ATTTCTGTGCAGTTCTGGTAAGAGGGAGA-TTTGTAG----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     308355 36 +   1495729 ATTTCTGTGCAGTTCTGGTAATAGGGAGA-TTTGTAG----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     406273 36 -    863181 ATTTCTGTGCAGTTCTGGTAATAGGGAGA-TTTGTAG----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29558310 36 -  71996105 ATTTCTGTGCAGTTCTGGTAATAGGGAGA-TTTGTAA----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     240914 36 -    735854 ATTTCTGTGCAGTTCTGGTAATAGGGAGA-TTTGTAG----
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30368572 40 + 171630274 ATTTCTGTGCAGTTCTGGTAATAAGAACA-TTTGTGGTTGG
i calJac3.chr4             C 0 I 3
s saiBol1.JH378341           192806 40 +    515838 ATTTCTGTGCAGTTCTGGTAATAGGGAGA-TTTGTGGGGGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     824595 40 -   1771730 ATTTCTGTGCAATTCTGGTAACAGGGAGA-TTTGTGGGGGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     310851 40 -    383796 ATTTCTGTGCAGTTCTGGTAATAGGGAGA-TTTGTGGTTGT
i aotNan1.NW_018496904v1   I 35 I 2
s proCoq1.NW_012149775v1      92962 41 -   1411461 ATTTCAGTGCAGTTCTGGTAATAGGGAGATTTTATGGTCGT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           236201 35 +  18854210 ATTTCCATGCAGTTCT-GTGATAGA-----TTTGTGATCAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58029800 17 -  94987271 --------------------ATAGGGGGG-TTTGTAGC---
i mm10.chr17               C 0 C 0
s canFam3.chr35            26286632 29 +  26524999 -----------TTTCAGGTAACAGGGACA-TTTGTGTTTTT
i canFam3.chr35            C 0 I 4
s dasNov3.JH569887            13339 38 -     22419 ATTTCTGTACAGTTCAGGCAATAGGGATA-TTTGTGGTC--
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e colAng1.NW_012115577v1     196254  5 -   1829203 I

a score=152019.000000
s hg38.chr6_GL000254v2_alt  1406571 10 +   4827813 TTTTTATTTT
s panTro5.chr6             30280009 10 + 175400573 TTTTTATTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30510563 10 + 173848474 TTTTTATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     217431 10 +   2037526 TTTTTGTTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74890459 10 + 122973662 TTTTTATTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30763962 10 + 172585720 TTTTTATTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30059104 10 - 170955103 TTTTTATTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     308391 10 +   1495729 TTTTTATTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     406309 10 -    863181 TTTTTATTTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29558346 10 -  71996105 TTTTTATTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     240950 10 -    735854 TTTTTATTTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     196259 10 -   1829203 TTTTTATTTT
i colAng1.NW_012115577v1   I 5 C 0
s calJac3.chr4             30368615 10 + 171630274 tttttatttt
i calJac3.chr4             I 3 C 0
s saiBol1.JH378341           192846  8 +    515838 --TTTATTTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     824635 10 -   1771730 TTTTTATTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     310893 10 -    383796 TTTTTATTTT
i aotNan1.NW_018496904v1   I 2 C 0
s proCoq1.NW_012149775v1      93003 10 -   1411461 TTTTTATTTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           236236  9 +  18854210 TTTTTA-TTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26286665 10 +  26524999 TTTTTATTTT
i canFam3.chr35            I 4 C 0
s dasNov3.JH569887            13377 10 -     22419 TTTTAATTTT
i dasNov3.JH569887         C 0 I 2904
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58029817  0 -  94987271 C

a score=100981.000000
s hg38.chr6_GL000254v2_alt  1406581 13 +   4827813 TTTAA-GTTACAC-T
s panTro5.chr6             30280019 13 + 175400573 TTTAA-GTTACAC-T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30510573 13 + 173848474 TTTAA-GTTACAC-T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     217441 13 +   2037526 TTTAA-GTTACAC-T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74890469 13 + 122973662 TTTAA-GTTACAC-T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30763972 13 + 172585720 TTTAA-ATTACAC-T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30059114 13 - 170955103 TTTAA-ATTACAC-T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     308401 13 +   1495729 TTAAA-ATTACAC-T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     406319 13 -    863181 TTAAA-ATTACAC-T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29558356 13 -  71996105 TTAAA-ATTACAC-T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     240960 13 -    735854 TTTAA-ATTACAC-T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     196269 14 -   1829203 TTAAA-ATTACACTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30368625 12 + 171630274 tttta--ttaCAC-T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           192854 12 +    515838 TTTAA--TTACAC-T
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     824645 12 -   1771730 TTAAA--TTACAC-T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     310903 12 -    383796 TTAAA--TTACAC-T
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      93013 13 -   1411461 TAAAA-ATGACAC-C
i proCoq1.NW_012149775v1   C 0 I 2
s otoGar3.GL873550           236245 13 +  18854210 TAAAA-ATTACAC-A
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26286675 14 +  26524999 TGAAAAAGAACAT-T
i canFam3.chr35            C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58029817  0 -  94987271 C
e dasNov3.JH569887            13387 2904 -     22419 I

a score=73942.000000
s hg38.chr6_GL000254v2_alt  1406594 6 +   4827813 -TTTTTA
s panTro5.chr6             30280032 6 + 175400573 -TTTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30510586 6 + 173848474 -TTTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     217454 6 +   2037526 -TTTTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74890482 6 + 122973662 -TTTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30763985 6 + 172585720 -TTTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30059127 6 - 170955103 -TTTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     308414 6 +   1495729 -TTTTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     406332 6 -    863181 -TTTTTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29558369 6 -  71996105 -TTTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     240973 6 -    735854 -TTTTTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     196283 6 -   1829203 -TTTTTA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           192866 6 +    515838 -TTCTTA
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     824657 6 -   1771730 -TTTTTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     310915 6 -    383796 -TTTTTA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      93028 6 -   1411461 -TTTTTA
i proCoq1.NW_012149775v1   I 2 C 0
s otoGar3.GL873550           236258 6 +  18854210 -TTTTAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26286689 7 +  26524999 TTTGTTA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58029817 0 -  94987271 C
e dasNov3.JH569887            13387 2904 -     22419 I
e calJac3.chr4             30368637 0 + 171630274 C

a score=8725.000000
s hg38.chr6_GL000254v2_alt  1406600 1 +   4827813 A
s panTro5.chr6             30280038 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30510592 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     217460 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74890488 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30763991 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30059133 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     308420 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     406338 1 -    863181 A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29558375 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     240979 1 -    735854 A
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     196289 1 -   1829203 A
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     824663 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496904v1     310921 1 -    383796 A
i aotNan1.NW_018496904v1   C 0 I 1
s proCoq1.NW_012149775v1      93034 1 -   1411461 A
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           236264 1 +  18854210 g
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26286696 1 +  26524999 G
i canFam3.chr35            C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58029817 0 -  94987271 C
e dasNov3.JH569887            13387 2904 -     22419 I
e saiBol1.JH378341           192872 1 +    515838 I
e calJac3.chr4             30368637 0 + 171630274 C

a score=1538.000000
s hg38.chr6_GL000254v2_alt  1406601 2 +   4827813 AC-
s panTro5.chr6             30280039 2 + 175400573 AC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30510593 2 + 173848474 AC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     217461 2 +   2037526 AC-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74890489 2 + 122973662 CC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30763992 2 + 172585720 CC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30059134 2 - 170955103 CC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     308421 2 +   1495729 CC-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     406339 2 -    863181 CC-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29558376 2 -  71996105 CC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     240980 2 -    735854 CC-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     196290 2 -   1829203 CC-
i colAng1.NW_012115577v1   C 0 C 0
s proCoq1.NW_012149775v1      93035 2 -   1411461 CC-
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           236265 2 +  18854210 gc-
i otoGar3.GL873550         C 0 I 3764
s mm10.chr17               58029817 1 -  94987271 -C-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26286697 2 +  26524999 -TT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e dasNov3.JH569887            13387 2904 -     22419 I
e saiBol1.JH378341           192872 1 +    515838 I
e aotNan1.NW_018496904v1     310922 1 -    383796 I
e cebCap1.NW_016107755v1     824664 1 -   1771730 I
e calJac3.chr4             30368637 0 + 171630274 C

a score=245113.000000
s hg38.chr6_GL000254v2_alt  1406603 34 +   4827813 CTTTTTATAACCAGTGAAATAAACCTTTTAGGAt
s panTro5.chr6             30280041 34 + 175400573 CTTTTTATAACCAGTGAAATAAACCTTTTAGGAt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30510595 34 + 173848474 CTTTTTATAACCAGTGAAATAAACCTTTTAGGAt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     217463 34 +   2037526 CTTTTTATAACCAGTGAAATAAACCTTTTAGGAt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74890491 34 + 122973662 CTTTTTATAACCAGTGAAATAAACCTTTTAGGAt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30763994 34 + 172585720 CTTTTTGTAACCAGTGAAATAAACCTTTTAGgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30059136 34 - 170955103 CTTTTTGTAACCAGTGAAATAAACCTTTTAGgtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     308423 34 +   1495729 CTTTTTGTAACCAGTGAAATAAACCTTTTAGGTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     406341 34 -    863181 CTTTTTGTAACCAGTGAAATAAACCTTTTAGGtt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29558378 34 -  71996105 CTTTTTATAACCAGTGAAATAAACCTTTTAGggt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     240982 34 -    735854 CTTTTTATAACCAGTGAAATAAACCTTTTACTTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     196292 34 -   1829203 CTTTTTATAACCAGTGAAATAAACCTTTTAGGTG
i colAng1.NW_012115577v1   C 0 C 0
s proCoq1.NW_012149775v1      93037 34 -   1411461 CTTCTTACAGCCAGTGAAGTAAACCTTTTAAGAT
i proCoq1.NW_012149775v1   C 0 I 1642
s mm10.chr17               58029818 18 -  94987271 Ctttttat----------------tttttactat
i mm10.chr17               C 0 C 0
s canFam3.chr35            26286699 34 +  26524999 TTTTTTATAGCCAGTGAAGCGAAGCTTTTAAGCT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e dasNov3.JH569887            13387 2904 -     22419 I
e saiBol1.JH378341           192872  1 +    515838 I
e otoGar3.GL873550           236267 3764 +  18854210 I
e aotNan1.NW_018496904v1     310922  1 -    383796 I
e cebCap1.NW_016107755v1     824664  1 -   1771730 I
e calJac3.chr4             30368637  0 + 171630274 C

a score=12949.000000
s hg38.chr6_GL000254v2_alt  1406637 3 +   4827813 -ttt
s panTro5.chr6             30280075 3 + 175400573 -ttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30510629 3 + 173848474 -ttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     217497 3 +   2037526 -ttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74890525 3 + 122973662 -ttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30764028 3 + 172585720 -ttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30059170 3 - 170955103 -ttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     308457 3 +   1495729 -TTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     406375 3 -    863181 -ttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29558412 3 -  71996105 -ttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     241016 3 -    735854 -ttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     196326 3 -   1829203 -ttt
i colAng1.NW_012115577v1   C 0 C 0
s mm10.chr17               58029836 3 -  94987271 -tta
i mm10.chr17               C 0 C 0
s canFam3.chr35            26286733 3 +  26524999 GTT-
i canFam3.chr35            C 0 I 628
e micMur3.chr6               288996 1887 + 123392446 I
e dasNov3.JH569887            13387 2904 -     22419 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e saiBol1.JH378341           192872 1 +    515838 I
e otoGar3.GL873550           236267 3764 +  18854210 I
e aotNan1.NW_018496904v1     310922 1 -    383796 I
e cebCap1.NW_016107755v1     824664 1 -   1771730 I
e calJac3.chr4             30368637 0 + 171630274 C

a score=110.000000
s hg38.chr6_GL000254v2_alt  1406640 4 +   4827813 t-ttt
s panTro5.chr6             30280078 4 + 175400573 t-ttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30510632 4 + 173848474 t-ttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     217500 4 +   2037526 t-ttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74890528 4 + 122973662 t-ttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30764031 4 + 172585720 t-ttt
i rheMac8.chr4             C 0 I 11
s macFas5.chr4             30059173 5 - 170955103 tgttt
i macFas5.chr4             C 0 I 9
s macNem1.NW_012012100v1     308460 4 +   1495729 t-ttt
i macNem1.NW_012012100v1   C 0 I 9
s cerAty1.NW_012002535v1     406378 1 -    863181 t----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29558415 2 -  71996105 t-t--
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012107142v1     241019 2 -    735854 t-t--
i manLeu1.NW_012107142v1   C 0 I 2
s colAng1.NW_012115577v1     196329 4 -   1829203 t-ttt
i colAng1.NW_012115577v1   C 0 I 1
s mm10.chr17               58029839 4 -  94987271 c-ttt
i mm10.chr17               C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e dasNov3.JH569887            13387 2904 -     22419 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e saiBol1.JH378341           192872 1 +    515838 I
e otoGar3.GL873550           236267 3764 +  18854210 I
e aotNan1.NW_018496904v1     310922 1 -    383796 I
e cebCap1.NW_016107755v1     824664 1 -   1771730 I
e calJac3.chr4             30368637 0 + 171630274 C

a score=35054.000000
s hg38.chr6_GL000254v2_alt  1406644 16 +   4827813 tttttttttttttttt
s gorGor5.CYUI01015528v1     217504  8 +   2037526 --------tttttttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74890532  6 + 122973662 ----------tttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30764046 16 + 172585720 ttgttttttttttttt
i rheMac8.chr4             I 11 I 5
s macFas5.chr4             30059187 16 - 170955103 ttgttttttttttttt
i macFas5.chr4             I 9 I 5
s macNem1.NW_012012100v1     308473 16 +   1495729 ttgttttttttttttt
i macNem1.NW_012012100v1   I 9 I 5
s cerAty1.NW_012002535v1     406379 13 -    863181 ---ttttttttttttt
i cerAty1.NW_012002535v1   C 0 I 5
s chlSab2.chr17            29558419 16 -  71996105 tggttttttttttttt
i chlSab2.chr17            I 2 I 33
s manLeu1.NW_012107142v1     241023 16 -    735854 ttgttttttgtttgtt
i manLeu1.NW_012107142v1   I 2 I 1253
s mm10.chr17               58029843 15 -  94987271 -ttttttttttttttt
i mm10.chr17               C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e dasNov3.JH569887            13387 2904 -     22419 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e saiBol1.JH378341           192872  1 +    515838 I
e otoGar3.GL873550           236267 3764 +  18854210 I
e aotNan1.NW_018496904v1     310922  1 -    383796 I
e cebCap1.NW_016107755v1     824664  1 -   1771730 I
e calJac3.chr4             30368637  0 + 171630274 C
e colAng1.NW_012115577v1     196333  1 -   1829203 I
e panPan2.chr6             30510636  0 + 173848474 C
e panTro5.chr6             30280082  0 + 175400573 C

a score=743085.000000
s hg38.chr6_GL000254v2_alt  1406660 144 +   4827813 gacagggtgtcgctctgtcacctagcctggagtgcagcgaggcaatcttgg--ctcact-----gcaacc---tccgcctcctgggctcaggtaatcctcccacctcagcctccaaagtagc--tgggaccacagacacatgccaccacgcctggc
s panPan2.chr6             30510636 143 + 173848474 gacagggtgtcgctctgtcacctagcctggagtacagtgaggcaatcttgg--ctcact-----gcaacc---tccgcctcctgggctcaggtaatcctcccacctcagcctccaaagtagc--tgggaccacagacacatgccaccacgcctgg-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     217512 144 +   2037526 gacagggtgtcgctctgtcacctagcctggagtgcagtgaggcaatcttgg--ctcact-----gcaacc---tctgcctcctgggctcaggtaatcctcccacctcagcctccaaagtagc--tgggaccacagacacatgccaccacgcctggc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74890538 144 + 122973662 aacagggtgtcgctctgtcacctagcctggagtgcagtgaggcaatcttgg--ctcact-----gcaacc---tccacctcctgagctcaggtaatcctcccacctcagcctccaaagtagc--tgggaccacagacacatgccaccacgcctggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30764067 146 + 172585720 gacagggtgttgctctgtcacctagcctggagtgcagtgaggcaatcttgg--ctcact-----gcaacc---tccgcctcctgggctcaggtaatcctcccacctcagcctccaaaatagctttgggaccacaggcacgtgccaccacgcctggc
i rheMac8.chr4             I 5 C 0
s macFas5.chr4             30059208 146 - 170955103 gacagggtgttgctctgtcacctagcctggagtgcagtgaggcaatcttgg--ctcact-----gcaacc---tccgcctcctgggctcaggtaatcctcccacctcagcctccaaaatagctttgggaccacaggcacgtgccaccacgcctggc
i macFas5.chr4             I 5 C 0
s macNem1.NW_012012100v1     308494 146 +   1495729 gacagggtgtcgctctgtcacctagcctggagtgcagtgaggcaatcttgg--ctcact-----gcaacc---tctgcctcctgggctcaggtaatcctcccacctcagcctccaaagtaactttgggaccacaggcacgtgccaccatgcctggc
i macNem1.NW_012012100v1   I 5 C 0
s cerAty1.NW_012002535v1     406397 146 -    863181 gacagggtgtcgctctgtcacctagcctggagtgcagtgaggcaatcttgg--ctcact-----gcaacc---tccgcctcctgggctcaggtaatcctcccacctcagcctccaaagtaactttgggacgacaggcacgtgccaccatgcctggc
i cerAty1.NW_012002535v1   I 5 C 0
s chlSab2.chr17            29558468 146 -  71996105 gacagggtgtcgctctgtcacctagcctggagtgcagtgaggcaatcttgg--ctcact-----gcaacc---tccgcctcctgggctcaggtaatcctcccacctcagcctccaaagtagctttgggaccacaggcacgtgccaccacgcctggc
i chlSab2.chr17            I 33 C 0
s manLeu1.NW_012107142v1     242292 146 -    735854 gacagggtgtcgctctgtcacctagcctggagtgcagtgaggcaatcttgg--ctcact-----gcaacc---tctgcctcctgggctcaagtaatcctcccacctcagcctccaaagtagctttgggaccacaggcacgtgccaccacgcctgac
i manLeu1.NW_012107142v1   I 1253 C 0
s colAng1.NW_012115577v1     196334 146 -   1829203 gatagggtgtcgctctgtcacctagcctggaatgcagtgaggcaatcttgg--ctcact-----gcaacc---tccgcctcctgggctcaggtaatcctcccacctcagcctccaaagtagctttgggaccacaggcacgtgccaccacgcctggc
i colAng1.NW_012115577v1   I 1 C 0
s mm10.chr17               58029858 129 -  94987271 -----ggtttctctgtgtagccctggctg----------------tcctggcactcactttgtagagaccaggctggcctc--gaactcaga-aatccgcctgcctctgcctcccgagt-gc--tgggattaaaggcgtgtgccaccacgcccggc
i mm10.chr17               C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e dasNov3.JH569887            13387 2904 -     22419 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e saiBol1.JH378341           192872   1 +    515838 I
e otoGar3.GL873550           236267 3764 +  18854210 I
e aotNan1.NW_018496904v1     310922   1 -    383796 I
e cebCap1.NW_016107755v1     824664   1 -   1771730 I
e calJac3.chr4             30368637   0 + 171630274 C
e panTro5.chr6             30280082   0 + 175400573 C

a score=18.000000
s hg38.chr6_GL000254v2_alt  1406804 16 +   4827813 --ttttttt--ttttttttt---------
s panTro5.chr6             30280082 16 + 175400573 --ttttttt--ttttttttt---------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30510779 13 + 173848474 -----tttt--ttttttttt---------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     217656 11 +   2037526 -------tt--ttttttttt---------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74890682  7 + 122973662 -------------ttttttt---------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30764213  9 + 172585720 -----------tttttgttt---------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30059354  9 - 170955103 -----------tttttgttt---------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     308640  8 +   1495729 ------------ttttgttt---------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     406543  8 -    863181 ------------tttttttt---------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29558614  8 -  71996105 ------------ttttgttt---------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     242438  8 -    735854 ------------ttttttgt---------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     196480  9 -   1829203 -----------tttttgttt---------
i colAng1.NW_012115577v1   C 0 C 0
s mm10.chr17               58029987 29 -  94987271 cttttttttggtttttatttatttatttt
i mm10.chr17               C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e dasNov3.JH569887            13387 2904 -     22419 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e saiBol1.JH378341           192872  1 +    515838 I
e otoGar3.GL873550           236267 3764 +  18854210 I
e aotNan1.NW_018496904v1     310922  1 -    383796 I
e cebCap1.NW_016107755v1     824664  1 -   1771730 I
e calJac3.chr4             30368637  0 + 171630274 C

a score=-1058.000000
s hg38.chr6_GL000254v2_alt  1406820 2 +   4827813 tt
s panTro5.chr6             30280098 2 + 175400573 tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30510792 2 + 173848474 tt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     217667 2 +   2037526 tt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74890689 2 + 122973662 tt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30764222 2 + 172585720 tg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30059363 2 - 170955103 tg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     308648 2 +   1495729 tg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     406551 2 -    863181 tg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29558622 2 -  71996105 tg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     242446 2 -    735854 tt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     196489 2 -   1829203 tg
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           192873 1 +    515838 C-
i saiBol1.JH378341         I 1 C 0
s mm10.chr17               58030016 2 -  94987271 ta
i mm10.chr17               C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e dasNov3.JH569887            13387 2904 -     22419 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e otoGar3.GL873550           236267 3764 +  18854210 I
e aotNan1.NW_018496904v1     310922 1 -    383796 I
e cebCap1.NW_016107755v1     824664 1 -   1771730 I
e calJac3.chr4             30368637 0 + 171630274 C

a score=25795.000000
s hg38.chr6_GL000254v2_alt  1406822 3 +   4827813 ttt
s panTro5.chr6             30280100 3 + 175400573 ttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30510794 3 + 173848474 ttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     217669 3 +   2037526 ttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74890691 3 + 122973662 ttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30764224 3 + 172585720 ttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30059365 3 - 170955103 ttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     308650 3 +   1495729 ttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     406553 3 -    863181 ttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29558624 3 -  71996105 ttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     242448 3 -    735854 gtt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     196491 3 -   1829203 ttt
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           192874 3 +    515838 TTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     824665 3 -   1771730 TTT
i cebCap1.NW_016107755v1   I 1 C 0
s mm10.chr17               58030018 3 -  94987271 ttt
i mm10.chr17               C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e dasNov3.JH569887            13387 2904 -     22419 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e otoGar3.GL873550           236267 3764 +  18854210 I
e aotNan1.NW_018496904v1     310922 1 -    383796 I
e calJac3.chr4             30368637 0 + 171630274 C

a score=1380595.000000
s hg38.chr6_GL000254v2_alt  1406825 141 +   4827813 ttttttttgtatttttag------------------------------------tagagatggggtttctctatgtttcccaggctggtcttgaact---------------------tctgagctcaagtgatccacc---cacctcagcatcccaaagtgct-gggattacaggcatgagccacc-ccgcctgaccTACTT
s panTro5.chr6             30280103 141 + 175400573 ttttttCtgtatttttag------------------------------------tagagatggggtttctctatgtttcccaggctggtcttgaact---------------------tctgagctcaagtgatccacc---cacctcagcatcccaaagtgct-gggattacaggcatgagccacc-ccgcctgaccTACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30510797 141 + 173848474 ttttttctgtatttttag------------------------------------tagagatggggtttctctatgtttcccaggctggtcttgaact---------------------tctgagctcaagtgatccacc---cacctcagcatcccaaagtgct-gggattacaggcatgagccacc-ccgcctgaccTACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     217672 140 +   2037526 tttttttggtatttttag------------------------------------tagagatggggtttctctatgtttcccaggctggtcttgaact---------------------gctgagctcaagtgatccacc---cacctcagcatcccaaagtgct-gggattaca-gcatgagccacc-ccgcctgaccTACTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74890694 141 + 122973662 ttttttttgtatttttag------------------------------------tagagatggggtttctctatgtttcccaggctggtcttgaact---------------------tctgagctcaagtgatccacc---cacctcagcatcccaaagtgct-gggattacaggcatgatccacc-ctgcctgaccTACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30764227 138 + 172585720 tgttttttgtatttttag------------------------------------tagagatagggtttctctctgtttcccaggctggtcttgaact---------------------cctgagctca----atcaacc---cacctcagcatcccaaagtgctggggattacaggcatgagccacc-ctgcctgaccTTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30059368 138 - 170955103 tgttttttgtatttttag------------------------------------tagagatagggtttctctatgtttcccaggctggtcttgaact---------------------cctgagctca----atcaacc---cacctcagcatcccaaagtgctggggattacaggcatgagccacc-ctgcctgaccTTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     308653 138 +   1495729 tgttttttgtatttttag------------------------------------tagagatagggtttctctatgtttcccaggctggtcttgaact---------------------cctgagctca----atcaacc---cacctcagcatcccaaagtgctggggattacaggcataagccacc-ctgcctgaccTTCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     406556 138 -    863181 tgttttttgtatttttag------------------------------------tagagatagggtttctctatgtttcccaggctggtcttgaact---------------------cctgagctca----atcaacc---cacctcagcatcccaaagtgctggggattacaggcatgagccacc-ctgcctgaccTTCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29558627 138 -  71996105 tgttttttgtatttttag------------------------------------tagagagagggtttctctatgtttcccagtctggtcttgaact---------------------cctgagctca----atcaacc---cagctcagcatcccaaagtgctggggattacaggcatgagccacc-ctgcctgaccTTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     242451 138 -    735854 tgttttttgtatttttag------------------------------------tagagatagggtttctctatgtttcccaggctggtcttgaact---------------------cctgagctca----atcaacc---cacctcagcaacccaaagtgctggggattacaggcatgagccacc-ctgccTAACCTTCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     196494 138 -   1829203 tgttttttgtatttttag------------------------------------tagagataggatttctctctgtttcccaggctggtcttgaact---------------------cctgagctca----atcaacc---cacctcagcatcccaaagtgctggggattacaggcatgagccacc-ctgcctgaccTCCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30368637 140 + 171630274 -tttttctttttttttag------------------------------------tagagatgggatttctctgtgtttcccaggctggtcttgaact---------------------cctgagctcaagcgatccacc---cacctcagcctcccaaagggct-gggattacaggcatgagctacc-ctgtctgaccTACTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           192877 141 +    515838 ttttttttttttttttag------------------------------------ttgagatggggtttctctatgtttcccaggctggtcttgaact---------------------cctgagctcaaatgatccacc---cagctcagcctcccaaagggct-gggattacaggcatgagctacc-tcgcccgaccTACTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     824668 141 -   1771730 Tttttttttttttttttg------------------------------------gagagatggggtttctctatgtttcccaggctggtcttgaact---------------------cctgagctcaagcgatccacc---cacctcagcctcccaaagggct-gggattacaggcatgagctacc-ttgcctgaccTACTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     310923 141 -    383796 tttttttttttttttcag------------------------------------tagagatggggtttctctatgtttcccaggctggttttgaact---------------------cctgagctcaagtgatccacc---cacctcagcctcccaaagggct-gggattacaggcatgagcgacc-ccacctgaccTACTT
i aotNan1.NW_018496904v1   I 1 C 0
s mm10.chr17               58030021 200 -  94987271 atttatttttatttttggtttttttgtttgtttgttttgttttgttttgtttttttgagacagggtttctctgtgcagtcctggctgtcctggaactcactctgtagaccaaactggccttgaactca-gagatccaccacttgcctctgcctccc-atgtact-gggattaaaggcatgcaccaccactgcctaactTACTT
i mm10.chr17               C 0 I 2449
e micMur3.chr6               288996 1887 + 123392446 I
e dasNov3.JH569887            13387 2904 -     22419 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e otoGar3.GL873550           236267 3764 +  18854210 I

a score=2502998.000000
s hg38.chr6_GL000254v2_alt  1406966 264 +   4827813 TTAGGATATTTAAAAGGAAATGAAG----------AAAAAAAAAA----CAACATAAGAAGCAGGTATTGTTTAGTGGTCAGCATCTTATACTGCAGTCTTCAACCGCAGTCAAGGTAGCTTT-CTTTGGAGAGAATTAGTCACACATGACTTAGAGAACATGGGctttctgaatgcttttaagacctcatttttgtctttggtgttctgcagtcactatagtatatcaaaatacgattttctt-----tt---attctgtttgggatttgttggac-----tttctgaaac
s panTro5.chr6             30280244 266 + 175400573 TTAGGATATTTAAAATGAAATGAAG----------AAAAAAAAAA--AACAACATAAGAAGCAGGTATTGTTTAGTGGTCAGCATCTTATACTGCAGTCTTCAACCGCAGTCAAGGTAGCTTT-CTTTGGAGAGACTTAGTCACACATGATTTAGAGAACATGGGctttctgaatgcttttaagacctcatttttgtcttttgtgttctgcagtcactatagtatatcaaaatacgattttctt-----tt---attctgtttgggatttgttggac-----tttctgaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30510938 265 + 173848474 TTAGGATATTTAAAAGGAAATGAAG----------AAAAAAAAAA---ACAACATAAGAAGCAGGTATTGTTTAGTGGTCAGCATCTTATACTGCAGTCTTCAACCGCAGTCAAGGTAGCTTT-CTTTGGAGAGAATTAGTCACACATGATTTAGAGAACATGGGctttctgaatgcttttaagacctcatttttgtctttggtgttctgcagtcactatagtatatcaaaatacgattttctt-----tt---attctgtttgggatttgttggac-----tttctgaaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     217812 265 +   2037526 TTAGGATATTTAAAAGGAAATGAAG----------AAAAAAAAAA---ACAACATAAGAAGCAGGTATTGTTTAGTGGTCAGCATCTTATACTGCAGTCTTCAACCACAGTCAAGGTAGCTTT-CTTTGGAGAGAATTAGTCACACATGATTTAGAGAACATGGGctttctgaatgcttttaagacctcatttttgtctttggtgttctgcagtcactatagtatatcaaaatacgattttctt-----tt---attctgtttgggatttgttggac-----tttctgaaac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74890835 273 + 122973662 TTAGGATATTTaaaaggaaatgaag----------aaaaaaaaaaaaaacaacataagaaGCAGGTATTGTTTAGTGGTCAGCATCTTATACTGCAGTCTTCAACCACAGTCAAGGTAGCTTT-CTTTGGAGAGAATTAGTCACACATGATTTAGAGAACATGGGctttctggatgcttttaagacttcatttttgtctttggtgttctgcagtccctgtagtatatcaaaatatgattttctt-----tt---attctgtttgggatttgttagacttcagtttctgaaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30764365 261 + 172585720 TTAGGATATTTAAAAGGAAATGAAG----------AAAAAAAACC--------ATAAGAAGCAAGTATTGTTTAGTGGTCAGCGTCTTATACTGCAGTGTTCAACCGCAGTCAAGGTAGCTTTACTTTGGAGAGAATTAGTCACACATGATTTAGAGAACATGGGctttctgaatgcttttaagacctcatctttgtctttggtgttctgcagtcactatagtatatcaaaatgtgattttctt-----tt---attctgtttgggatttgttggac-----tttctgaaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30059506 261 - 170955103 TTAGGATATTTAAAAGGAAATGAAT----------AAAAAAAACC--------ATAAGAAGCAAGTATTGTTTAGTGGTCAGCATCTTATACTGCAGTCTTCAACCGCAGTCAAGGTAGCTTTACTCTGGAGAGAATTAGTCACACATGATTTAGAGAACATGGGctttctgaatgcttttaagacctcatctttgtctttggtgttctgcagtcactatagtatatcaaaatgtgattttctt-----tt---attctgtttgggatttgttggac-----tttctgaaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     308791 261 +   1495729 TTAGGATATTTAAAAGGAAATGAAG----------AAAAAAAACC--------ATAAGAAGCAAGCATTGTTTAGTGGTCAGCATCTTATACTGCAGTCTTCAACCGCAGTCAAGGTAGCTTTACTTTGGAGAGAATTAGTCACACATGATTTAGAGAACATGGGctttctgaatgcttttaagacctcatctttgtctttggtgttctgcagtcactatagtatatcaaaatgtgattttctt-----tt---attctgtttgggatttgttggac-----tttctgaaac
i macNem1.NW_012012100v1   C 0 I 329
s cerAty1.NW_012002535v1     406694 261 -    863181 TTAGGATATTTAAAAGGAAATGAAG----------AAAAAAAACC--------ATAAGAAGCAAGTATTGTTTAGTGGTCAGCATCTTATACCGCAGTCTTCAACCGCAGTCAAGGTAGCTTTACTTTGGAGAGAATTAGTCACACATGATTTAGAGAACATGGGctttctgaatgcttttaagacctcatctttgtctttggtgttctgcagtcactatagtatatcaaaatgtgattttctt-----tt---attctgtttgggatttgttggac-----tttctgaaac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29558765 261 -  71996105 TTAGGATATTTAAAAGGAAATGAAG----------AAAAAAAACC--------ATAAGAAGCAAGTATTGTTTAGTGGTCAGCATCTTATACTGCAGTCTTCAACCGCAGTCAAGGTAGTTTTACTTTGGAGAGAATTAGTCACACATGATTTAGAGAACATGGGctttctgaatgcttttaagacctcatctttgtctttggtgttctgcagtcactatagtatatcaaaatgtgattttctt-----tt---attctgtttgggatttgttggac-----tttctgaaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     242589 261 -    735854 TTAGGATATTTAAAAGGAAATGAAG----------AAAAAAAACC--------ATAAGAAGCAAGTATTGTTTAGTGGTCAGCATCTTATACCGCAGTCTTCAACCGCAGTCAAGGTAGCTTTACTTTGGAGAGAATTAGTCACACATGATTTAGAGAACATGGGctttctgaatgcttttaagacctcatctttgtctttggtgttctgcagtcactatagtatatcaaaatgtgattttctt-----tt---attctgtttgggatttgttggac-----tttctgaaac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     196632 263 -   1829203 TTAGGATATTTAAAAGGAAATGAAG--------AAAAAAAAAACC--------ATAAGAAGCAGGTATTGTTTAGTGGTCAGTATCTTATACTGCAGTCTTCAACCGCAGTCAAGGTAGCTTTACTTTGGAGAGAATTAGTCACACATGATTTATAGAACATGGGctttctgaatgctttcaagacctcatctttgtctttggtgttctgcagtcactatagtatatcaaaatgtgattttctt-----tt---attctgtgtgggatttgttggac-----tttctgaaac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30368777 271 + 171630274 TTAGGATATATAAAAGGAAATGAAA-AAACAAACAAACAAAAAAC--------ATAAGAAGCAGGTATTGTTTAGTGGTCGGCATCTTATACTGCAGTCTTCAACTGCAGTCAAGGTAGCTTTACATTGGAGAAAATTAGTCACGCACGATTTAGGGAACATGGGCtttctgaattattttaagacatcatctttgtctttggtgtccttcagtcactacagtatataaaaatgtga--ttttt-----taaaaattccgtttgggatttgttgcac-----tttctgaaac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           193018 269 +    515838 CTAGGATACATAAAAGGAAATGAAA-----AAACAAACAAAAAAC--------ATAAGAAGCAGGTATTGCTTAGTGGTCAGCATCTTATACTGCAGTCTTTAACTGCAGTCAAGGTAGCTTTACATTGGAGAGAATTAGTCACGCATGATTTAGGGAACATGGGCTTTCTAAATTAttttaaaacgtcatctttgtctttggtgtccgtcagtcactgtattatatcaaaatgtgattttttt-----tttttattctgtttgggatttgttgcac-----tttctgaaac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     824809 272 -   1771730 TTAGGATATATAAAAGGAaatcaaa-aaacaaacaaacaaaaaac--------ataagaagcaGGTATTGTTTAGTGGTCAGCATCTTATACTGCAGTCTTCAACTGTAGTCAAGAAAGCTTTACATTGGAGACAATTAGTCACGCATGATTTAGGGAACATGGGctttctgaattcttttaagacgtca------tctttggtgtccttcagtcactatagtatatcaaaatgtgattttttttattattattattctgtttgggatttgttgcac-----tttctgaaac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     311064 275 -    383796 TTAGGATATATAAAAGGAAATGAAAAAAACAAACAAATAAAAAAC--------ATAAGAAGCAGGTATTGTTTAGTGGTCAGCATCTTATACTGCAGTCTTCAACTGCAGTCAAGGTAGCTTTACAATGGAGAGAATTGGTCACACATGATTTAGGGAACATGGGctttctgtattcttttaagacgtcatctttgtctttggtgtccttcagtcactatagtatatcaaaatgtgatttttttt----ttttaattctgtttgggatttgttgcac-----tttctgaaac
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e dasNov3.JH569887            13387 2904 -     22419 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e otoGar3.GL873550           236267 3764 +  18854210 I

a score=20055.000000
s hg38.chr6_GL000254v2_alt  1407230 2 +   4827813 tg
s panTro5.chr6             30280510 2 + 175400573 tg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30511203 2 + 173848474 tg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     218077 2 +   2037526 tg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74891108 2 + 122973662 tg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30764626 2 + 172585720 tg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30059767 2 - 170955103 tg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     406955 2 -    863181 tg
i cerAty1.NW_012002535v1   C 0 I 320
s chlSab2.chr17            29559026 2 -  71996105 tg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     242850 2 -    735854 tg
i manLeu1.NW_012107142v1   C 0 I 320
s colAng1.NW_012115577v1     196895 2 -   1829203 tg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30369048 2 + 171630274 tg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           193287 2 +    515838 tg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     825081 2 -   1771730 tg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     311339 2 -    383796 tg
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e dasNov3.JH569887            13387 2904 -     22419 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e otoGar3.GL873550           236267 3764 +  18854210 I
e macNem1.NW_012012100v1     309052 329 +   1495729 I

a score=66795.000000
s hg38.chr6_GL000254v2_alt  1407232 6 +   4827813 agagtg
s panTro5.chr6             30280512 6 + 175400573 agagtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30511205 6 + 173848474 agagtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     218079 6 +   2037526 agagtg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74891110 6 + 122973662 agagtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30764628 6 + 172585720 agagtg
i rheMac8.chr4             C 0 I 321
s macFas5.chr4             30059769 6 - 170955103 agagtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     309381 6 +   1495729 agagtg
i macNem1.NW_012012100v1   I 329 C 0
s cerAty1.NW_012002535v1     407277 6 -    863181 agagtg
i cerAty1.NW_012002535v1   I 320 C 0
s chlSab2.chr17            29559028 6 -  71996105 agagtg
i chlSab2.chr17            C 0 I 339
s manLeu1.NW_012107142v1     243172 6 -    735854 agagtg
i manLeu1.NW_012107142v1   I 320 C 0
s colAng1.NW_012115577v1     196897 6 -   1829203 agagtg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30369050 6 + 171630274 agagtg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           193289 6 +    515838 agaatg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     825083 6 -   1771730 agagtg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     311341 6 -    383796 agagtg
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e dasNov3.JH569887            13387 2904 -     22419 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e otoGar3.GL873550           236267 3764 +  18854210 I

a score=7867.000000
s hg38.chr6_GL000254v2_alt  1407238 3 +   4827813 gac
s panTro5.chr6             30280518 3 + 175400573 gat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30511211 2 + 173848474 ga-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     218085 3 +   2037526 gat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74891116 3 + 122973662 gat
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30059775 3 - 170955103 cat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     309387 3 +   1495729 gat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     407283 3 -    863181 gat
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     243178 3 -    735854 gat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     196903 3 -   1829203 cat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30369056 3 + 171630274 aat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           193295 3 +    515838 aat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     825089 3 -   1771730 aat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     311347 3 -    383796 aat
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e dasNov3.JH569887            13387 2904 -     22419 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e otoGar3.GL873550           236267 3764 +  18854210 I
e chlSab2.chr17            29559034 339 -  71996105 I
e rheMac8.chr4             30764634 321 + 172585720 I

a score=50564.000000
s hg38.chr6_GL000254v2_alt  1407241 6 +   4827813 tttttt
s panTro5.chr6             30280521 6 + 175400573 tttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30511213 6 + 173848474 tttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     218088 6 +   2037526 tttttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74891119 6 + 122973662 tttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30764955 6 + 172585720 tttttt
i rheMac8.chr4             I 321 C 0
s macFas5.chr4             30059778 6 - 170955103 tgttgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     309390 6 +   1495729 ttttgt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     407286 6 -    863181 tttttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29559373 6 -  71996105 tttttt
i chlSab2.chr17            I 339 C 0
s manLeu1.NW_012107142v1     243181 6 -    735854 tttttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     196906 6 -   1829203 tttttt
i colAng1.NW_012115577v1   C 0 I 1098
s calJac3.chr4             30369059 6 + 171630274 tttttt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           193298 6 +    515838 ttggtt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     825092 6 -   1771730 tttttt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     311350 6 -    383796 tttttt
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e dasNov3.JH569887            13387 2904 -     22419 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e otoGar3.GL873550           236267 3764 +  18854210 I

a score=19110.000000
s hg38.chr6_GL000254v2_alt  1407247 2 +   4827813 tt
s panTro5.chr6             30280527 2 + 175400573 tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30511219 2 + 173848474 tt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     218094 2 +   2037526 tt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74891125 2 + 122973662 tt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30764961 2 + 172585720 tt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30059784 2 - 170955103 tt
i macFas5.chr4             C 0 I 316
s macNem1.NW_012012100v1     309396 2 +   1495729 tt
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     407292 2 -    863181 tt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29559379 2 -  71996105 tt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     243187 2 -    735854 tt
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30369065 2 + 171630274 tt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           193304 2 +    515838 tt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     825098 2 -   1771730 tt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     311356 2 -    383796 tt
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e dasNov3.JH569887            13387 2904 -     22419 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e otoGar3.GL873550           236267 3764 +  18854210 I
e colAng1.NW_012115577v1     196912 1098 -   1829203 I

a score=1923911.000000
s hg38.chr6_GL000254v2_alt  1407249 239 +   4827813 --c---atcaaccttggaaaattatc-agccatcatctcttttaatattctctttcccccatgttctca--gtcctcac-attctgg-acctcgaatt---agttactagaaagagg-tttctctcttct--gtcctcca--tttctctcaccttctt-ttcatattttcaattgctgt---tctctttatgcca-ccttctgagtaatttcttcaggtccctcttccatgtcactaattctgtcttcagtttatttcaagt---
s panTro5.chr6             30280529 236 + 175400573 --c---atcaaccttggaaaattatc-agccatcatctcttttaatattctctttcccctgtgttctca--gtcctcac-attctgg-acctcgaatt---agttactagaaagagg-tttctctcttct--gtcctcca--tttctctcacctt----ttcatattttcaatcgcttt---tctctttatgcca-ccttctgagtaatttcttcaggtccctcttccatgtcactaattctgtcttcagtttatttcaagt---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30511221 236 + 173848474 --c---atcaaccttggaaaattatc-agccatcatctcttttaatattctctttcccccatgttctca--gtcctcac-attctgg-acctcgaatt---agttactagaaagagg-tttctctcttct--gtcctcca--tttctctcacctt----ttcatattttcaatcgcttt---tctctttatgcca-ccttctgagtaatttcttcaggtccctcttccatgtcactaattctgtcttcagtttatttcaagt---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     218096 239 +   2037526 --c---atcaaccttggaaaattatc-agccatcatctcttttaatattctctttcccccatgttctca--gtcctcac-attctgg-acctcgaatt---agttactagaaagagg-tttctctcttgt--gtcctcca--tttctctcaccttctt-ttcatattttcaatcgcttt---tctctttatgcca-ccttctgagtaatttcttcaggtccctcttccatgtcactaattctgtcttcagtttatttcaagt---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74891127 239 + 122973662 --c---atcaaccttggaaaattatc-agccatcaactcttttaatattctctttcccccatgttctca--gtcctcac-attctgg-accttgaatt---agttactagaaagagg-tttctctcttct--gtcctcca--tttctctcaccctctt-ttcatattttcaatcgcttt---tctctttatgcca-ccttctgagtaatttattcaggtccctcttccatgtcactaattctgtcttcagtttatttcaagt---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30764963 239 + 172585720 --c---atcaaccatggaaaattatc-agccatcatctcttttaatattctctttcccccatgttctca--gtcctcac-attctgg-acctctaatt---agttactagaatgaga-tttctctcttct--gtcctcca--tttctctcgccctctt-ttcatattttcaatcgcttt---tctctttatgcca-ccttctgagtaatttcttcaggttcctcttccatgtcactaattctgtcttcagtttatttcaagt---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30060102 239 - 170955103 --c---atcaaccttggaaaattatc-agccatcatctcttttaatattctctttcccccatgttctca--gtcctcac-attctgg-acctctaatt---agttactagaatgaga-tttctctcttct--gtcctcca--tttctctcgccctctt-ttcatattttcaatcgcttt---tctctttatgcca-ccttctgagtaatttcttcaggttcctcttccatgtcactaattctgtcttcagtttatttcaagt---
i macFas5.chr4             I 316 C 0
s macNem1.NW_012012100v1     309399 253 +   1495729 --t---atcaaccttggaaaattatcaagccatcatctcttttaatattctctttcccccatgttctcagtgtcctcacgattctggaacctataatctagcgttactagaatgagactttctttcctcttcgtcctcccattttctctcgcctcattgttcata-tttcaatcgcttttcgtcttttagtgccacccttctgagtaatttcttcaggttcctcttccatgtcact-attctgtcttcagttttattca--t---
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     407294 239 -    863181 --c---atcaaccttggaaaattatc-agccatcatctcttttaatattctctttcccccatgttctca--gtcctcac-attctgg-acctctaatt---agttactagaatgaga-tttctctcttct--gtcctcca--tttctctcgccctctt-ttcatattttcaatcgcttt---tctctttatgcca-ccttctgagtaatttcttcaggttcctcttccatgtcactagttctgtcttcagtttatttcaagt---
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29559381 237 -  71996105 --c---atcaaccttggaaaattatc-agccatcacctcttttaatactctctttcccccatgttctca--gtcct--c-attctgg-acctctaatt---agttactagaatgaga-tttctctcttct--gtcctcca--tttctctcgccctctt-ttcatattttcagtcgcttt---tctctttatgcca-ccttctgagtaatttcttcaggttcctcttccatgtcactaattctgtcttcagtttatttcaagt---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     243189 239 -    735854 --c---atcaaccttggaaaattatc-agccatcatctcttttaatattctctttcccccatgttctca--gtcctcac-attctgg-acctctaatt---agttactagaatgaga-tttctctcttct--gtcctcca--tttctctcgccctctt-ttcatattttcaatcgcttt---tctctttatgcca-ccttctgagtaatttcttcaggttcctcttccatgtcactagttctgtcttcagtttatttcaagt---
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30369067 242 + 171630274 tttttaatcagccttggaaaattatc-agctatcatctcatttaatattgcctttcccccatgttccca--gtcctcac-attctgg-acctctaatt---agttacaagaa-gaga-ggtgtctctttt--gtcctcca--tttctctcaccctctt-ttcata-tttcaatcgcttt---tctctttatgcca-ccttctgggtaatttcttcaggtccctcttccatgtcactaattctgtcttcagtttattttaaat---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           193306 241 +    515838 tttt--gtccgccttggaaaattgtc-agccatcatctcatttaatattgcctttcctccatgttctca--gtcctcac-attctgg-acctcttatt---agttactagaa-gaga-ggggtctctttt--gtcctcca--tttctctcaccctctt-ttcgtattttcgatcgcttt---tctctttatacca-ccttctggttaatttcttcaggtccctcttccatgtcactaattctgtcttcagtttatttcaaat---
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     825100 234 -   1771730 ttc---atcagccttggaaaattgtc-----atcatctcatttaatattgccttttccccatgttctca--gtcctcac-attctgg-acctctaatt---agttactagaa-gaga-ggtgtctctttt--gtcctcca--tttctctcaccctctt-ttcatattttcaattgcttt---tctttttatgcca-ccttctgggtaatttcttcaggtccctctcccatgtcactaa--ctgtcttcagtttatttcaaat---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     311358 237 -    383796 ttc---gtcagccttggaaaattgtc-agccatcatctcatttaatattgccttttccccatgttctca--gtcctcac-attctgg-acctctaatt---agttactagaa-gaga-ggtgtctctttt--gtcctcca--tttctctcaccctctt-ttcatattttcaatcgcttt---tctctttatgcca-cct-----gcaatttcttcaggt-cctcttcaatgtcactaattctgttttcagtttatttcaaatatt
i aotNan1.NW_018496904v1   C 0 I 731
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e dasNov3.JH569887            13387 2904 -     22419 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e otoGar3.GL873550           236267 3764 +  18854210 I
e colAng1.NW_012115577v1     196912 1098 -   1829203 I

a score=18018.000000
s hg38.chr6_GL000254v2_alt  1407488 3 +   4827813 att
s panTro5.chr6             30280765 3 + 175400573 att
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30511457 3 + 173848474 att
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     218335 3 +   2037526 att
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74891366 3 + 122973662 att
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30765202 3 + 172585720 att
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30060341 3 - 170955103 att
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     309652 3 +   1495729 att
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     407533 3 -    863181 att
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29559618 3 -  71996105 att
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     243428 3 -    735854 att
i manLeu1.NW_012107142v1   C 0 C 0
s dasNov3.JH569887            16291 3 -     22419 att
i dasNov3.JH569887         I 2904 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e saiBol1.JH378341           193547 0 +    515838 C
e otoGar3.GL873550           236267 3764 +  18854210 I
e aotNan1.NW_018496904v1     311595 731 -    383796 I
e cebCap1.NW_016107755v1     825334 0 -   1771730 C
e calJac3.chr4             30369309 0 + 171630274 C
e colAng1.NW_012115577v1     196912 1098 -   1829203 I

a score=1596176.000000
s hg38.chr6_GL000254v2_alt  1407491 250 +   4827813 attatttt-ttactattg-ttattattttgagttctatttaatt--a-cttttcaaat---ctccttaat--ttttaaataattatcagttctttaatcatattttaaattgttccttttatt--attctttaaatata---tatttaaa-atattaaatat-ggtta-ttatattctatgtcttataat-tctgatatctgcggatt-ttgtgt-gtctgatgctgctgtcttttgttt-ctgctgtctctctcatagtgctttttttctt-
s panTro5.chr6             30280768 243 + 175400573 attatttt-ttactattg-ttattatttagagttctatttaatt--a-cttttcaaat---ctc---aat--ttttaaataattatcagttctttaatcatattttaaattgttccttttatt--attcttta----ta---tatttaaa-atattaaatat-ggtta-ttatattctatgtctcataat-tctgatatctgtggatt-ttgtgt-gtctgatgctgctgtcttttgttt-ctgctgtctctctcatagtgctttttttctt-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30511460 247 + 173848474 attatttt-ttactattg-ttattattttgagttctatttaatt--a-cttttcaaat---ctc---aat--ttttaaataattatcagttctttaatcatattttaaattgttccttttatt--attctttaaatata---tatttaaa-atattaaatat-ggtta-ttatattctatgtctcataat-tctgatatctgtggatt-ttgtgt-gtctgatgctgctgtcttttgttt-ctgctgtctctctcatagtgctttttttctt-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     218338 250 +   2037526 attatttt-ttactattg-ttattattttgagttctatttaatt--a-cttttcaaat---ctccttaat--ttttaaataattatcagttctttaatcatattttaaattgttcgttttatt--attctttaaatata---tatttaaa-atattaaatat-ggtta-ttatattctatgtctcataat-tctgatatctgtggatt-ttgtgt-gtctgatgctgctgtcttttgttt-ctgctgtctctctcatagtgctttttttctt-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74891369 247 + 122973662 attatttt-ttacta----ttattattttgagttatatttaatt--a-cttttcaaat---ctcctcaat--ttttaaataattctcagttctttaatcatattttaaattgttccttttatt--attctttaaatata---tatttaaa-atattaaatat-ggtta-ttatattctatgtctcataat-tctgatatccgtggatt-ttgtgt-gtctgatgctgctgtcttttgttt-ctgctgtctctctcatagtgctttttttctt-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30765205 244 + 172585720 attatttt-ttactattgtttattattttgagttctatttaatt--a-cttttcaaat---ctc---aat--ttttaaataattctcagttccttaataatattttaaattgttccttttact--agtctttaaatata---tatttaaa-atattaaatgt-ggtta-ttatattctatgtctcataat-tctgatatccgtggatt-ttgtgt-gtctgatgctgctgtc---tgttt-ctgctgtctctctcatagtgcttttttctt--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30060344 243 - 170955103 attatttt-ttactattg-ttattattttgagttctatttaatt--a-cttttcaaat---ctc---aat--ttttaaataattctcagttccttaataatattttaaattgttccttttact--agtctttaaatata---tatttaaa-atattaaatgt-ggtta-ttatattctatgtctcataat-tctgatatccgtggatt-ttgtgt-gtctgatgctgctgtc---tgttt-ctgctgtctctctcatagtgcttttttctt--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     309655 244 +   1495729 attattttgttactattg-ttagttatttgagttctatttaattgaa-cttttcaaat---ctc---aat--ttttaaataattctcaggttccttataatatttaaaattgttccttttactgaagtctttaaatata---attctaaa-atataaactgtcggtta-ttatattctatg-ctcataat---tgatatccgtggattattgtgtggtctgatg--actgcc---tgtttcctgctgt---tctcatagtgcttttttctt--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     407536 239 -    863181 attatttt-ttactattg-ttattattttgagttctatttaatt--a-cttttcaaat---ctc---aat--ttttaaataattctcagttccttaatcatattttaaattgttccttttact--agtctttaaatata-------taaa-atattaaatat-agtta-ttatattctatgtctcataat-tctgatatccatggatt-ttgtgt-gtctgatgctgctgtc---tgttt-ctgctgtctctctcatagtgcttttttctt--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29559621 242 -  71996105 attatttt-ttactattg-ttgttattttgagttctat----tt--a-tttttcaaatctcctc---aat--ttttaaataattctcagttccttaatcatattttaaattgttccttttact--agtctttaaatata---tatttaaa-atattaaatat-ggtta-ttatattctatgtctcataat-tctgatatccgtggatt-ttgtgt-gtctgatgctgctgtc---tgttt-ctgctatctctctcatagtgcttttttctt--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     243431 239 -    735854 attatttt-ttactattg-ttattattttgagttctatttaatt--a-cttttcaaat---ctc---aat--ttttaaataattctcagttccttaatcatattttaaattgttccttttact--agtctttaaatata-------taaa-atattaaatat-agtta-ttatattctatgtctcataat-tctgatatccatggatt-ttgtgt-gtctgatgctgctgtc---tgttt-ctgctgtctctctcatagtgcttttttctt--
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30369309 226 + 171630274 attatttt-ttattattg-ctattactttgaattctattt------a-cttttcaaatctcctc---aat--ttttaaataattttcagttccttaatcatattttaaattgttc----------attcttta----ta---tatttaaa-atattaattat-ggtta-ttatagtctatgtctcataat-tctgatatccatggatt-ttgtct--tctgatgctgctgtcttttgttt-ctg----ctctctcatggtgccttttt--t--
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           193547 232 +    515838 attatttt-ttattattg-tta----tttgagttctattcaata--a-cttttcaaat---ctc---aat--ttttaaa----cctcagttccttaatcatattttaaattgttc-ttttatt--attctttg----ta---tgtttaaa-atattaaatat-ggtta-taatattctatgtctcataat-tctgatatccatagatt-ttgtct--tctgatgctgctgtcttttgttt-ctgctgtctctctcatggtgccttttttct--
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     825334 227 -   1771730 atcatttt-ttattatta-c------tttgagttctgtttaatt--a-cttttcaaatctcctc---aat--ttttaaataattctcagttccttaatcatattttaaattgttc-ttttatt--attcttta----ta---tatttaaa-atattaaatat-ggtta-taatattctatgtctcata-------aaatccatggatt-ttgtct--tctgatgctgctgtcttttgttt-ctg----ctctctcatggtgccttttttct--
i cebCap1.NW_016107755v1   C 0 I 1
s dasNov3.JH569887            16294 237 -     22419 ATTACCTT-TTA-----A-Acatttttatgcatt-tatttgatt--attttttcagat---ctc---agtcattttaa--------tagctctttacttgtattttaaatgtctcctttt-----attctttaaaaatatcgtatttaaatatattaaatgt-ggttatttatattctgtgtctgatattttctgatatgc-cagtcc-ttgtga-gcctgaagctgctgtttactattt-ctgctgactcttgc-tagtccttttttccc-t
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e otoGar3.GL873550           236267 3764 +  18854210 I
e aotNan1.NW_018496904v1     311595 731 -    383796 I
e colAng1.NW_012115577v1     196912 1098 -   1829203 I

a score=1113207.000000
s hg38.chr6_GL000254v2_alt  1407741 123 +   4827813 -tg-ttttgtgatttttgactataaattcgagttttttagaacttgaactgtaggaattctttgaggccttgggcgagtgctgtattctcagcatttgtgtttcttttctaggtgccttgaagca
s panTro5.chr6             30281011 123 + 175400573 -tg-ttttgtgatttttgactataaattcgagttttttagaacttgaactgtaggaattctttgaggccttgggcgagtgctgtattctcagcatttgtgtttcttttctaggtgccttgaagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30511707 123 + 173848474 -tg-ttttgtgatttttgactataaattcgagttttttagaacttgaactgtaggaattctttgaggccttgggcgagtgctgtattctcagcatttgtgtttcttttctaggtgccttgaagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     218588 123 +   2037526 -tg-ttttgtgatttttgactataaattcgagttttttagaacttgaactgtaggaattctttgaggccttgggcgagtgctgtattctcagcatttgtgtttcttttctaggtgccttgaagca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74891616 123 + 122973662 -tg-ttttgtgattttttactataaattcgagttttttagaacttgaactgtaggaattctttgaggccttgggcgagtgctgtattctcagaatttgtgtttcttttctaggtgccttgaagca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30765449 123 + 172585720 -tg-ttttgtaatttttgacaataaatttgagttttttagaacttgaactgtaggaattctttgaggccttgggtaagtgttgtattctcagcatttgtgtttcttttctaggtgccttgaagca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30060587 123 - 170955103 -tg-ttttgtaatttttgacaataaatttgagttttttagaacttgaactgtaggaattctttgaggccttgggtaagtgttgtattctcagcatttgtgtttcttttctaggtgccttgaagca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     309899 122 +   1495729 -tg-ttttttaattttt-acaataaatttgagttttttagaacttgaactgtaggaattctttgaggccttgggtaagtgttgtattctcagcatttgtgtttcttttctaggtgccttgaagca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     407775 123 -    863181 -tg-ttttgtaatttttgacaataaatttgagttttttagaacttgaactgtaggaattctttgaggccttgggtaagtgctgtattctcagcatttgtgtttcttttctaggtgccttgaagca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29559863 123 -  71996105 -tg-ttttgtaatttttgacaataaatttgagttttttagaacttgaactgtaggaattctttgaggccttgggtaagtgctgtattctcagcatttgtgtttcttttctaggtgccttgaagca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     243670 123 -    735854 -tg-ttttgtaatttttgacaataaatttgagttttttagaacttgaactgtaggaattctttgaggccttgggtaagtgctgtattctcagcatttgtgtttcttttctaggtgccttgaagca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     198010 123 -   1829203 -tg-ttttgtgatttttgacaataaatttgagttttttaggacttgaactgtaggaattctttgaggccttgagtaagtgctgtattcttagcatttgtgtttcttttctaggtgccttaaagca
i colAng1.NW_012115577v1   I 1098 C 0
s calJac3.chr4             30369536 115 + 171630274 -tg-ttttgtga-ttttgtctataaatttgagttttttagaacttgaactgtaggaattctttgagaccttgagtgagtgctgtattctcagcatttgcatttctttt-------ccttgaagca
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           193780 115 +    515838 -tg-ttttgtga-ttttgtctataaatttgagttttttagaacctgaactgcaggaattctttgagaccttgagtgagtgctgtattctcagcatttgcatttctttt-------ccttgaagca
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     825562 115 -   1771730 -tg-ttttgtga-ttttgtctataaacttgagttttttagaacttgaactgtaggaattctttgagaccttgagtgagTGCTGTATTCTCAGCATTTGTATTTCTTTT-------CCTTGAAGCA
i cebCap1.NW_016107755v1   I 1 C 0
s dasNov3.JH569887            16531 106 -     22419 ttgtttttgtcatttttgac--taaactcaggacttttggaactttaactctgggaattctctgaggcctgggctgaatgctatatt------------ggttttt-----ggtgccttgaggca
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e otoGar3.GL873550           236267 3764 +  18854210 I
e aotNan1.NW_018496904v1     311595 731 -    383796 I

a score=3386600.000000
s hg38.chr6_GL000254v2_alt  1407864 331 +   4827813 ctatcaagctggaattactttaaataaattcttggcttcatgttttttggagcagacagatagtatg---aatttgagctgcaaatccatgtaagggctagcttacagttag-aaattctcaggagagagttttctctctttctacctactgagacagtcaaattccccttctatagagttgaa--ttt-tttcttttcttgttcacttttacaagaaagggcagccttt-----------tgcagttcccaaatttatgcacgggatctcCTATCAGACCTTATACATTTTGTCCCTCATTTCCTATGCTTCCAGTGACTGTCAAAACAGTA--TAAAG---GGC---ACCATAGT
s panTro5.chr6             30281134 331 + 175400573 ctatcaagctggaattactttaaataaattcttggcttcatgttttttggagcagacagatagtatg---aatttgagctgcaaatccatgtaagggctagcttatggttag-aaattctcaggagagagttttctctctttctacctactgagacagtcaaattccccttctatagagttgaa--ttt-tttcttttcttgttcacttttacaagaaagggcagccttt-----------tgcagttcccaaatttatgcacgggatctcCTATCAGACCTTATACATTTTGTCCCTCATTTCCTATGCTTCCAGTGACTGTCACAACAGTA--TAAAG---GGC---ACCATAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30511830 331 + 173848474 ctatcaagctggaattactttaaataaattcttggcttcatgttttttggagcagacagatagtatg---aatttgagctgcaaatccatgtaagggctagcttatggttag-aaattctcaggagagagttttctctctttctacctactgagacagtcaaattccccttctatagagttgaa--ttt-tttcttttcttgttcacttttacaagaaagggcagccttt-----------tgcagttcccaaatttatgcacgggatctcCTATCAGACCTTATACATTTTGTCCCTCATTTCCTATGCTTCCAGTGACTGTCACAACAGTA--TAAAG---GGC---ACCATAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     218711 331 +   2037526 ctatcaagctggaattactttaaataaattcttggcttcatgttttttggagcagacagatagtatg---aatttgagctgcaaatccatgtaagggctagcttacggttag-aaattctcaggagagagttttctctctttctacctactgagacagtcaaattccccttctatagagttgaa--ttt-tttcttttcttgttcacttttacaagaaagggcagccttt-----------tgcagttcccaaatttatgcatgggatctcCTATCAGACCTTATACATTTTGTCCCTCATTTCCTATGCTTCCAGTGACTGTCACAACAGTA--TAAAG---GGC---ACCATAGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74891739 331 + 122973662 ctatcaagctggaattactttaaataaattcttggcttcatgttttttggagcagacagatagtagg---aatttgagctgcaaatccatgtaagggctagcttatggttag-aaattctcaggagagagttttctctctttctacctactgagacagtcaaattccccttctatagagttgaa--ttt-tttcttttcttgttcacttttacaagaaagggcagccttt-----------tgcagctcccaaatttatgcgcaaggtctcCTATCAGACCTTATACATTTTGTCCCTCATTTCCTATGCTTCCAGTGACTGTCACAACAGTA--TAAAG---GGC---ACCGCAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30765572 331 + 172585720 ctatcaagctggaattactttaaataaattcttggcttcatgttttttggagcagacagatagtatg---aatttgagctgcaaatccatgtaagggctagcttatggctag-aaattctcaggaaagagttttctctctttctacctactgagacagtcaaattccccttctatagagttgaa--tttctttcttttcttgttcacttttacaaaaaagggcaggcttt-----------tgcagttcccaaatttatgcacaggatctcCTATCA-ACCTTGCACATTTTGTCCCTCATTTCCTATGCTTCCAGTGACTGTTGCAACAGTA--TAAAG---GGC---ACCATAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30060710 331 - 170955103 ctatcaagctggaattactttaaataaattcttggcttcatgttttttggagcagacagatagtatg---aatttgagctgcaaatccatgtaagggctagcttatggctag-aaattctcaggaaagagttttctctctttctacctactgagacagtcaaattccccttctatagagttgaa--tttctttcttttcttgttcacttttacaaaaaagggcaggcttt-----------tgcagttcccaaatttatgcacaggatctcCTATCA-ACCTTGCACATTTTGTCCCTCATTTCCTATGCTTCCAGTGACTGTTGCAACACTA--TAAAG---GGC---ACCAGAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     310021 331 +   1495729 ctatcaagctggaattactttaaataaattcttggcttcatgttttttggagcagacagatagtatg---aatttgagctgcaaatccatgtaagggctagcttatggctag-aaattctcaggaaagagttttctctctttctacctactgagacagtcaaattccccttctatagagttgaa--tttctttcttttcttgttcacttttacaaaaaagggcagccttt-----------tgcagttcccaaatttatgcacaggatctcctatca-accttacacattttgtccctcatttcctatgcttccagtgactgttgcaacagta--taaag---ggc---accagagt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     407898 333 -    863181 ctatcaagctggaattactttaaataaattcttggcttcatgttttttggagcacacagatagtatg---aatttgagctgcaaatccatgtaagggctagcttatggctag-aaattctcaggaaagagttttctctctttctacctactgagacagtcaaattccccttctatagagttgaa--ttt-tttcttttgttgttcacttttacaaaaaagggcagccttt-----------tgcagttcccaaatttatgcacaggatctcCTATCA-ACCTTACACATTTTGTCCCTCATTTCCTATGCTTCCAGTGACTGTTGCAACAGTA--TAAAGGGCGGC---ACCATAGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29559986 326 -  71996105 ctatcaagctggaa----tttaaataaattcttggcttcatgttttttggagcagacagatagtatg---aatttgagctgcaaatccatgtaagggctagcttatggttag-aaattctcaggagagagttttctctctttctacctactgagacagtcaaatttcccttctatacagttgaa--ttt-tttcttttcttactcacttttacaaaaaagggcagccttt-----------tgaagttcccaaatttatgcacaggatctcCTATCA-ACCTTACACATTTTGTCCCTCATTTCCTATGCTTCCAGTGACTGTTGCAACAGTA--TAAAA---GGC---ACCATAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     243793 333 -    735854 ctatcaagctggaattactttaaataaattcttggcttcatgttttttggagcagacagatagtatg---aatttgagctgcaaatccatgtaagggctagcttatggttag-aaattctcaggagagagttttctctctttctacctactgagacagtcaaattccccttctatagagttgaa--ttt-tttcttttcttactcacttttacaaaaaagggcagccttt-----------tgcagttcccaaatttatgcacaggatctcCTATCA-ACCTTACACATTTTGTCCCTCATTTCCTATGCTTCCAGTGACTGTTGCAACAGTA--TAAAGGGCGGC---ACCATAGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     198133 329 -   1829203 ctatcaagctggaattactttaaataaattcttggcttcatgttttttggagcagacagatagtatg---aatttgagctgcaaatccatgtaagggctagcttatggttag-aaattctcaggagagagttttctctctttctacctactgagacagtcaaattccccttctatagagttgaa--tt--tttcttttcttgttcacttttacaaaaaagggcagccttt-----------tgcagttcccaaatttatgcacaggatctcCTATCA-ACCTTACACATTTTGTCCCTCATTTCCTATGCTTCCAGTAACTGTTGCAACAGTA--TAAAG---GGC---ACCATAGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30369651 323 + 171630274 ctatcaagctggaattactttaaataaattcttggcttcatgttttttggagcagacagatagtatg---aatttgagctgcaaatccacgtaagggttagcttatggttag-aaattctcaggagagagttttctctc---ctgcctactaaga----caaattccccttctatagagttgaa--ttt-tttcttttcttgttcacttttacaaaaaagggcagctctt-----------tgcagttcccaaatttatgcagggaatctcCTATCAGACCTTTTACATTTTGTCCCTCATTTCCTATGCTTTCAGTGACCGTCATAACAGTA--TTAAG---GGC---ACCATAG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           193895 328 +    515838 ctatcaagctggaattactttaaataaattcttggcttcatgttttctggagcagacagatagtatg---aatttgagctgcaaatccatgtaagggtcagcttatagtcag-aaattctcaggagagagttttctctccttctgctcactgaga----caaattccccttctatagagttgaattttt-tttcttttcttgttcacttttacaaaaaagggcagctctt-----------tgcagttcccaaatttatgcagggactctcCTATCAGACCTTATACATTTGGTCCCTCATTTCCTATGCTTTCAGTGACCGTCATAACAGTA--TTAGG---GGA---ACCATAG-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     825677 327 -   1771730 CTATCAAGCTGGAATTACTTTAAATAAATTCTTGGCTTCATGTTTTTTGGAGCAGACAGATAATATG---AATATGAGCTGCAAATCCATGTAAGGGTCAGCTTATAGTTAG-AAATTATCAGG-GAGAGTTTTCTCTCCTTCTGCCTACTGAGA----CAAATTCCCCTTCTATAGAGTTGAATTTTT-TTTCTTTTTTTGTTCACTTTTACAAAAAAGGGCAGCTCTT-----------TGCAGTTCCTAAATTTATGCAGGGAATCTCCTGTCAGACCTTATACATTTTGTCCCTCATTTCCTATGCTTTCAGTGACTATCATAACAGTA--TCAAG---GGC---ACCATAG-
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           240031 320 +  18854210 cTGTCAAACTGAAA-----TTGAAtaaattcttgactttactttttttggagcagacacaaagtatg---aatttcagctgcaaatccatgtaagggacagattatggttagaaaattctcaggagaggtttttctct----ccatcTTTTGAGAAAGTCAAACTCCCCTTCTACAGAGTTGAA--T---TGTCAGTTGCTATTC-TTTTTACACAAAAGAGTAGACCTT-----------TGGGGGTCACTGATTTGTGCAGGGGATCTCCTATCAGACATTACAAGTTTTGTCTGTGGTTCCTTATGCTGCCTAGAGCTTTCAAAACAATA--TTAAG---GGC---ATTTTGGT
i otoGar3.GL873550         I 3764 I 575
s dasNov3.JH569887            16637 348 -     22419 cctccaagctgaaagcactttaaataaattctgggcttcaggttttttgggccacacaggtagtatgaataatttcagctgcaaaaccatctcagggccagcttgtggctag-aaattctcagaggatatatttctcttcctctacttactgaga--gttaaattcctcttttgcaaagttgaa--tta-tttttcttcttgttcacttttgcacagaggggtaggccttttggttgggggtggggattccaaatttatgcaaggggtctcttttcagacattgtaggttttatctctggtttcttaagctccgtatggctgtcaaaacagtaggtcaag---ggagtggctatagt
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e aotNan1.NW_018496904v1     311595 731 -    383796 I

a score=286287.000000
s hg38.chr6_GL000254v2_alt  1408195  45 +   4827813 ----GTCACTG----------TCACGTTTCATAGGGACATTAGTT-----------------------------------------------------------TTAACTTCCCTGTC
s panTro5.chr6             30281465  45 + 175400573 ----GTCACTG----------TCACGTTTCATAGGGACATTAGTT-----------------------------------------------------------TTAACTTCCCTGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512161  45 + 173848474 ----GTCACTG----------TCACGTTTCATAGGGACATTAGTT-----------------------------------------------------------TTAACTTCCCTGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219042  45 +   2037526 ----GTCACTG----------TCACGTTTCATAGGGACATTAGTT-----------------------------------------------------------TTAACTTCCCTGTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892070  45 + 122973662 ----GTCACTG----------TCACGTTTCATAGGGACATTAGTT-----------------------------------------------------------TTAACTTCACTGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30765903  45 + 172585720 ----GTCACTG----------TCACATTTCATAGGGACATCAGTT-----------------------------------------------------------TTAACTTCACTGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30061041  45 - 170955103 ----GTCACTG----------TCACATTTCATAGGGACATCAGTT-----------------------------------------------------------TTAACTTCACTGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     310352  45 +   1495729 ----gtcactg----------tcacatttcatagggacatcagtt-----------------------------------------------------------ttaacttcactgtc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     408231  45 -    863181 ----GTCACTG----------TCACATTTCATAGGGACATCAGTT-----------------------------------------------------------TTAACTTCACTGTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29560312  45 -  71996105 ----GTCACTG----------TCACATTTCATAGGGACATCAGTT-----------------------------------------------------------TTAACTTCACTGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     244126  45 -    735854 ----GTCACTG----------TCACATTTCATAGCGACATCAGTT-----------------------------------------------------------TTAACTTCACTGTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     198462  45 -   1829203 ----GTCACTG----------TCACATTTCATAGGGACATCAGTT-----------------------------------------------------------TTAACTTCACTGTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30369974  35 + 171630274 ---------TG----------TCACGTTTCATTGGGACTTCAGTT----------------------------------------------------------------TTCACTGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           194223  31 +    515838 ---------TG----------TCACGTTTCATTGGGACTTCACTT----------------------------------------------------------------TTCA----C
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     826004  35 -   1771730 ---------TG----------TCACGTTTCATTGGGACTTCAGTT----------------------------------------------------------------TTCACTGTC
i cebCap1.NW_016107755v1   C 0 C 0
s dasNov3.JH569887            16985 118 -     22419 gtaagtgattgagtgcctgcttccccttgtatgaggtcctgggttcgatgcctggaaactcctaaaaaaaaaaagtgggtcgcagggtagcagatggcctcaggtgggcttacctgtc
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e otoGar3.GL873550           240351 575 +  18854210 I
e aotNan1.NW_018496904v1     311595 731 -    383796 I

a score=211214.000000
s hg38.chr6_GL000254v2_alt  1408240 20 +   4827813 TGGATTTCTGGTTTTACAGA
s panTro5.chr6             30281510 20 + 175400573 TCGATTTCTGGTTTTACAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512206 20 + 173848474 TCGATTTCTGGTTTTACAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219087 20 +   2037526 TGGATTTCTGGTTTTACAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892115 20 + 122973662 TGGATTTCTGGTTTTACAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30765948 20 + 172585720 TGGATTTCTGGTTTTACAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30061086 20 - 170955103 TGGATTTCTGGTTTTACAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     310397 20 +   1495729 tggatttctggttttacaga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     408276 20 -    863181 TGGATTTCTGGTTTTACAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29560357 20 -  71996105 TGGATTTCTGGTTTTACAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     244171 20 -    735854 TGGATTTCTGATTTTACAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     198507 20 -   1829203 TGGATTTCTGGTTTTACAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30370009 20 + 171630274 TGGATTTCTGGTTTTGCATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           194254 20 +    515838 TGGATTTCTGGTTTTGCATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     826039 20 -   1771730 TGGATTTCTGGTTTTGCATA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           240926 20 +  18854210 TAGATTTCCAGTTTTATATC
i otoGar3.GL873550         I 575 C 0
s dasNov3.JH569887            17103 20 -     22419 tgggttcctggttttacatc
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e proCoq1.NW_012149775v1      93071 1642 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e aotNan1.NW_018496904v1     311595 731 -    383796 I

a score=645557.000000
s hg38.chr6_GL000254v2_alt  1408260 57 +   4827813 ACTTTTAACCAGTGTGCAGATTGCCTTTACTTTCTTGCCATCTCATCAAAGGATTAA
s panTro5.chr6             30281530 57 + 175400573 ACTTTTAACCAGTGTGCAGATTGCCTTTACTTTCTTGCCATCTCATCAAAGGATTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512226 57 + 173848474 ACTTTTAACCAGTGTGCAGATTGCCTTTACTTTCTTGCCATCTCATCAAAGGATTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219107 57 +   2037526 ACTTTTAACCAGTGTGCAGATTGCCTTCACTTTCTTGCCATCTCATCAAAGGATTAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892135 57 + 122973662 ACTTTTAACCAGTGTGCAGATTGCCTTTACTTTCTTGCCATCTCATCAAAGGATTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30765968 57 + 172585720 ACTTTTAACCAGTATGAAGACTGCCTTTACTTTCTTGCCATCTCATCAAAAGATTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30061106 57 - 170955103 ACTTTTAACCAGTATGAAGATTGCCTTTACTTTCTTGCCATCTCATCAAAAGATTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     310417 57 +   1495729 acttttaaccagtatgaagattgcctttactttcttgccatctcaTCAAAAGATTAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     408296 57 -    863181 ACTTTTAACCAGTATGAAGACTGCCTTTACTTTCTTGCCATCTCATCAAAAGATTAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29560377 57 -  71996105 ACTTTTAACCAGTATGAAGATTGCCTTTACTTTCTTGCCATCTCATCAAAAGATTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     244191 57 -    735854 ACTTTTAACCAGTATGAAGATTGCCTTTACTTTCTTGCCATCTCATCAAAAGATTAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     198527 57 -   1829203 ACTTTTAACCAGTATGAAGATTGCCTTTACTTTCTTGCCATCTCATCAAAGGATTAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30370029 56 + 171630274 ACTTTT-ACCAGTGTGAAGTTTGCCTTTACTTTCTCACCATCTCATCAATGGATTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           194274 56 +    515838 ACTTTT-ACCAGTGTGAAGTTTGCCTTTACTTTCTCGCCATCTCATCAATGAGTTAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     826059 50 -   1771730 ACTTTT-ACCAGTGTGAA------TTTTACTTTCTCACCATCTCATCAATGGATTAA
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1      94713 57 -   1411461 ACTTTTAATCAGTGTGAAGGTTGCCTTTACTTTCTTGCCGTCTCATCAATGGATTAA
i proCoq1.NW_012149775v1   I 1642 C 0
s otoGar3.GL873550           240946 56 +  18854210 ATTTTTAACCAAT-TGAAGATTGCCTTTACTATCTTACTGTCTTATCAATGGATTAA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569887            17123 57 -     22419 atctctgaccaatgtgaagattgccttcacttttctgctatctcatcaatgggtcca
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e canFam3.chr35            26286736 628 +  26524999 I
e aotNan1.NW_018496904v1     311595 731 -    383796 I

a score=158958.000000
s hg38.chr6_GL000254v2_alt  1408317 11 +   4827813 AAATATTCATA
s panTro5.chr6             30281587 11 + 175400573 AAATATTCATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512283 11 + 173848474 AAATATTCATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219164 11 +   2037526 AAATATTCATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892192 11 + 122973662 AAATATTCATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766025 11 + 172585720 AAATATTCATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30061163 11 - 170955103 AAATATTCATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     310474 11 +   1495729 AAATATTCATA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     408353 11 -    863181 AAATATTCATA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29560434 11 -  71996105 AAATATTCATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     244248 11 -    735854 AAATATTCATA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     198584 11 -   1829203 AAATATTCATA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30370085 11 + 171630274 AAATATTCACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           194330 11 +    515838 AAATATTCATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     826109 11 -   1771730 AAATATTCATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     312326 11 -    383796 AAATATTCATA
i aotNan1.NW_018496904v1   I 731 C 0
s proCoq1.NW_012149775v1      94770 11 -   1411461 AAATATTCATA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           241002 11 +  18854210 AAATATTAATA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569887            17180 11 -     22419 atttattcata
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e canFam3.chr35            26286736 628 +  26524999 I

a score=143809.000000
s hg38.chr6_GL000254v2_alt  1408328 11 +   4827813 GTCAGATATAT
s panTro5.chr6             30281598 11 + 175400573 GTCAGATATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512294 11 + 173848474 GTCAGATATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219175 11 +   2037526 GTCAGATATAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892203 11 + 122973662 GTCAGATATAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766036 11 + 172585720 GTCAGATATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30061174 11 - 170955103 GTCAGATATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     310485 11 +   1495729 GTCAGATATAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     408364 11 -    863181 GTCAGATATAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29560445 11 -  71996105 GTCAGATATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     244259 11 -    735854 GTCAGATATAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     198595 11 -   1829203 GTCAGATATAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30370096 11 + 171630274 GTCAGATATAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           194341 11 +    515838 GTCAGATATAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     826120 11 -   1771730 GTCAGATATAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     312337 11 -    383796 GTCAGATATAT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      94781 11 -   1411461 CTCAAATATAT
i proCoq1.NW_012149775v1   C 0 I 338
s otoGar3.GL873550           241013 11 +  18854210 CTCAAATATAT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e dasNov3.JH569887            17191  0 -     22419 C
e canFam3.chr35            26286736 628 +  26524999 I

a score=134421.000000
s hg38.chr6_GL000254v2_alt  1408339 18 +   4827813 -----------CTTTTAAAA-GTATTTTT--T
s panTro5.chr6             30281609 18 + 175400573 -----------CTTTTAAAA-GTATTTTT--T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512305 18 + 173848474 -----------CTTTTAAAA-GTATTTTT--T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219186 18 +   2037526 -----------CTTTTAAAA-GTTTTTTT--T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892214 18 + 122973662 -----------CTTTTAAAA-GTATTTTT--T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766047 18 + 172585720 -----------CTTTTAAAA-GTATTTTT--T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30061185 18 - 170955103 -----------CTTTTAAAA-GTATTTTT--T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     310496 18 +   1495729 -----------CTTTTAAAA-GTATTTTT--T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     408375 18 -    863181 -----------CTTTTAAAA-GTATTTTT--T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29560456 18 -  71996105 -----------CTTTTAAAA-GTATTTTT--T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     244270 18 -    735854 -----------CTTTTAAAA-GTATTTTT--T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     198606 18 -   1829203 -----------CTTTTAAAA-GTATTTTT--T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30370107 17 + 171630274 -----------CTTTTAAGA-GTATTTTT---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           194352 17 +    515838 -----------CTTGTAAGA-GTATTTTT---
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     826131 18 -   1771730 -----------CTTTTAAGA-GTATTTTTT--
i cebCap1.NW_016107755v1   C 0 I 463
s aotNan1.NW_018496904v1     312348 17 -    383796 -----------CT--TAAGATGTATTTTT-T-
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           241024 29 +  18854210 TTTTATTCAtttttttcaat-ttattttc--t
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e dasNov3.JH569887            17191  0 -     22419 C
e proCoq1.NW_012149775v1      94792 338 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I

a score=268682.000000
s hg38.chr6_GL000254v2_alt  1408357  36 +   4827813 -----------------TCCTATCAC---------------------TGGTTGTCATT-------------------TTACCAAAAAAAA--------------AAA-------
s panTro5.chr6             30281627  36 + 175400573 -----------------TCCTATCAC---------------------TGGTTGTCATT-------------------TTACCAAAAAAAA--------------AAA-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512323  36 + 173848474 -----------------TCCTATCAC---------------------TGGTTGTCATT-------------------TTACCAAAAAAAA--------------AAA-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219204  36 +   2037526 -----------------TCCTATCAC---------------------TGGTTGTCATT-------------------TTACCAAAAAAAA--------------AAA-------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892232  36 + 122973662 -----------------TCCTATCAC---------------------TAGTTGTCATT-------------------TTACCAAAAAAAA--------------AAA-------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766065  36 + 172585720 -----------------TCCTATCAC---------------------TGATTGTCATT-------------------TTACCaaaaaaaa--------------aaa-------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30061203  34 - 170955103 -------------------CTATCAC---------------------TGATTGTCATT-------------------TTACCaaaaaaaa--------------aaa-------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     310514  34 +   1495729 -------------------CTATCAC---------------------TGATTGTCATT-------------------TTACCaaaaaaaa--------------aaa-------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     408393  36 -    863181 -----------------TCCTATCAC---------------------TGATTGTCATT-------------------TTACCaaaaaaaa--------------aaa-------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29560474  36 -  71996105 -----------------TCCTATCAC---------------------TGATTGTCATT-------------------TTACCAAAAAGAA--------------AAA-------
i chlSab2.chr17            C 0 I 24
s manLeu1.NW_012107142v1     244288  36 -    735854 -----------------TCCTATCAC---------------------TGATTGTCATT-------------------TTACCaaaaaaaa--------------aaa-------
i manLeu1.NW_012107142v1   C 0 I 24
s colAng1.NW_012115577v1     198624  38 -   1829203 -----------------TCCTATCAC---------------------TGATTGTCATT-------------------TTACCaaaaaaaat------------caaa-------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30370124  36 + 171630274 -----------------TCCTATCGC---------------------TGGTTGTCATT-------------------TTACCAAAAAAAA--------------AAA-------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           194369  36 +    515838 -----------------TCCTATCAC---------------------TGGTTGTCATT-------------------TTACCaaaaaaaa--------------aaa-------
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     312365  35 -    383796 ------------------CCTATCAC---------------------TGGTTGTCATT-------------------TTACCaaaaaaaa--------------aaa-------
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           241053 114 +  18854210 ttagagacagggtctaactctgtcacccaagctgaagtgcggtggtgtgattataactcactgcaaccttgaactcctggcctcaaacaatcctcccatcccccaaagtacagg
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e dasNov3.JH569887            17191   0 -     22419 C
e proCoq1.NW_012149775v1      94792 338 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e cebCap1.NW_016107755v1     826149 463 -   1771730 I

a score=1821.000000
s hg38.chr6_GL000254v2_alt  1408393 1 +   4827813 A
s panTro5.chr6             30281663 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512359 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219240 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892268 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766101 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30061237 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     310548 1 +   1495729 a
i macNem1.NW_012012100v1   C 0 I 24
s cerAty1.NW_012002535v1     408429 1 -    863181 a
i cerAty1.NW_012002535v1   C 0 C 0
s colAng1.NW_012115577v1     198662 1 -   1829203 a
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30370160 1 + 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           194405 1 +    515838 a
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     312400 1 -    383796 a
i aotNan1.NW_018496904v1   C 0 I 291
s otoGar3.GL873550           241167 1 +  18854210 g
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e dasNov3.JH569887            17191 0 -     22419 C
e proCoq1.NW_012149775v1      94792 338 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e cebCap1.NW_016107755v1     826149 463 -   1771730 I
e manLeu1.NW_012107142v1     244324 24 -    735854 I
e chlSab2.chr17            29560510 24 -  71996105 I

a score=-96.000000
s hg38.chr6_GL000254v2_alt  1408394 1 +   4827813 A
s gorGor5.CYUI01015528v1     219241 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892269 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873550           241168 1 +  18854210 a
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e dasNov3.JH569887            17191 0 -     22419 C
e proCoq1.NW_012149775v1      94792 338 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e saiBol1.JH378341           194406 0 +    515838 C
e aotNan1.NW_018496904v1     312401 291 -    383796 I
e cebCap1.NW_016107755v1     826149 463 -   1771730 I
e calJac3.chr4             30370161 0 + 171630274 C
e colAng1.NW_012115577v1     198663 0 -   1829203 C
e manLeu1.NW_012107142v1     244324 24 -    735854 I
e chlSab2.chr17            29560510 24 -  71996105 I
e cerAty1.NW_012002535v1     408430 0 -    863181 C
e macNem1.NW_012012100v1     310549 24 +   1495729 I
e macFas5.chr4             30061238 0 - 170955103 C
e rheMac8.chr4             30766102 0 + 172585720 C
e panPan2.chr6             30512360 0 + 173848474 C
e panTro5.chr6             30281664 0 + 175400573 C

a score=5274.000000
s hg38.chr6_GL000254v2_alt  1408395 23 +   4827813 TTTTTTTTAAATAAA-----------------------------AAGAagat
s panTro5.chr6             30281664 17 + 175400573 -----TTTAAA-AAT-----------------------------AAAAagat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512360 18 + 173848474 -----TTAAAATAAA-----------------------------AAGAagat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219242 23 +   2037526 TTTTTTAATAAAAAG-----------------------------AAGAAGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892270 19 + 122973662 T----TTAAAATAAA-----------------------------AAGAagat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766102 22 + 172585720 -attaaaaaaattaa-----------------------------aagaagaa
i rheMac8.chr4             C 0 I 3
s macFas5.chr4             30061238 22 - 170955103 -attaaaaaaattaa-----------------------------aagaagaa
i macFas5.chr4             C 0 I 4
s cerAty1.NW_012002535v1     408430 22 -    863181 -attaaaaaaattaa-----------------------------aagaagaa
i cerAty1.NW_012002535v1   C 0 I 3
s colAng1.NW_012115577v1     198663 16 -   1829203 -------aaaataaa-----------------------------aagaaGAT
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30370161  9 + 171630274 --------AAAAAAa-----------------------------aa------
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           194406 15 +    515838 --------aaaaaaa-----------------------------aaaaaGAT
i saiBol1.JH378341         C 0 I 3
s otoGar3.GL873550           241169 50 +  18854210 --ttataggagtgagccactacacccCACTCAAatatatatttcaagaatat
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e dasNov3.JH569887            17191  0 -     22419 C
e proCoq1.NW_012149775v1      94792 338 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e aotNan1.NW_018496904v1     312401 291 -    383796 I
e cebCap1.NW_016107755v1     826149 463 -   1771730 I
e manLeu1.NW_012107142v1     244324 24 -    735854 I
e chlSab2.chr17            29560510 24 -  71996105 I
e macNem1.NW_012012100v1     310549 24 +   1495729 I

a score=-1309.000000
s hg38.chr6_GL000254v2_alt  1408418 1 +   4827813 -t
s panTro5.chr6             30281681 1 + 175400573 -t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512378 1 + 173848474 -t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219265 1 +   2037526 -T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892289 1 + 122973662 -t
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30370171 1 + 171630274 -t
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           194424 1 +    515838 -T
i saiBol1.JH378341         I 3 C 0
s otoGar3.GL873550           241219 1 +  18854210 g-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e dasNov3.JH569887            17191 0 -     22419 C
e proCoq1.NW_012149775v1      94792 338 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e aotNan1.NW_018496904v1     312401 291 -    383796 I
e cebCap1.NW_016107755v1     826149 463 -   1771730 I
e colAng1.NW_012115577v1     198679 1 -   1829203 I
e manLeu1.NW_012107142v1     244324 24 -    735854 I
e chlSab2.chr17            29560510 24 -  71996105 I
e cerAty1.NW_012002535v1     408452 3 -    863181 I
e macNem1.NW_012012100v1     310549 24 +   1495729 I
e macFas5.chr4             30061260 4 - 170955103 I
e rheMac8.chr4             30766124 3 + 172585720 I

a score=313463.000000
s hg38.chr6_GL000254v2_alt  1408419 38 +   4827813 ttttttcccagcgtgtggcttgcc----tattttcttaaccc
s panTro5.chr6             30281682 38 + 175400573 ttttttcccagcgtgtggcttgcc----tattttcttaaccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512379 38 + 173848474 ttttttcccagcgtgtggcttgcc----tattttcttaaccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219266 38 +   2037526 ttttttcccagtgtgtggcttgcc----tattttcttaaccc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892290 42 + 122973662 ttttttcccagcctgtggcttgcctatttattttcttaacct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766127 42 + 172585720 ttttttcccagcctgtggcttgcctatttattttcttaaccc
i rheMac8.chr4             I 3 C 0
s macFas5.chr4             30061264 41 - 170955103 -tttttcccagcctgtggcttgcctatttattttcttaaccc
i macFas5.chr4             I 4 C 0
s macNem1.NW_012012100v1     310573 42 +   1495729 ttttttcccagcctgtggcttgcctatttattttcttaaccc
i macNem1.NW_012012100v1   I 24 C 0
s cerAty1.NW_012002535v1     408455 42 -    863181 ttttttcccagcctgtggcttgcctgtttattttcttaaccc
i cerAty1.NW_012002535v1   I 3 C 0
s chlSab2.chr17            29560534 42 -  71996105 ttttttcccagcctgcagcttgcctatttattttcttaaccc
i chlSab2.chr17            I 24 C 0
s manLeu1.NW_012107142v1     244348 42 -    735854 ttttttcccagcctgtggcttgcctacttattttcttaaccc
i manLeu1.NW_012107142v1   I 24 C 0
s colAng1.NW_012115577v1     198680 41 -   1829203 -Tttttcccagcctgtggcttgcctatttattttcttaaccc
i colAng1.NW_012115577v1   I 1 C 0
s calJac3.chr4             30370172 42 + 171630274 ttttttccctgactgtggcttgcctatttattttcttaaccc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           194425 42 +    515838 tttttccccagactgtggcttgcctatttattttcttaaccc
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           241220 33 +  18854210 -tttttcccagtctgtggcttgctcatttaactt--------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e dasNov3.JH569887            17191  0 -     22419 C
e proCoq1.NW_012149775v1      94792 338 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e aotNan1.NW_018496904v1     312401 291 -    383796 I
e cebCap1.NW_016107755v1     826149 463 -   1771730 I

a score=445330.000000
s hg38.chr6_GL000254v2_alt  1408457 50 +   4827813 ---tctttaaatgagcagaagttttaag-tttttataaggttcagcttatcc----tt
s panTro5.chr6             30281720 50 + 175400573 ---tctttaaatgagcagaagttttaag-tttttataaggttcagcttatcc----tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512417 49 + 173848474 ---tctttaaatgagcagaagttttaag-tttttataaggttcagcttatcc-----t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219304 50 +   2037526 ---tctttaaatgagcagaagttttaag-tttttataaggttcagcttatcc----tt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892332 50 + 122973662 ---tctttaaatgagcagaagttttaag-tttttataaggttcagcttatcc----tt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766169 53 + 172585720 ---tctttaaatgagcagaagttttaagttttttataaggtccagcttatcc--tttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30061305 53 - 170955103 ---tctttaaatgagcggaagttttaagttttttataaggtccagcttatcc--tttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     310615 53 +   1495729 ---tctttaaatgagcggaagttttaagttttttataaggtccagcttatcc--tttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     408497 53 -    863181 ---tctttaaatgagcagaagttttaag-tttttataaggtccagcttatcc-ttttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29560576 54 -  71996105 ---tctttaaatgagcagaagttttaag-tttttataaggtccagcttatcctttttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     244390 51 -    735854 ---tctttaaatgagcagaagttttaag-tttttataaggtccagcttatcc---ttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     198721 53 -   1829203 ---tctttaaatgagcagaagttttaag-tttttataaggtccagcttatcc-ttttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30370214 49 + 171630274 ---tctttaaatgagcagaagttttaag-tttttatgaggtccagcttatcc-----c
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           194467 49 +    515838 ---tctttaaatgagcagaagttttaag-tttttatgaggtccagcttatcc-----t
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     826612 49 -   1771730 ---tctttatatgagcagaagttttaag-tttttatgaggtccagcttatcc-----c
i cebCap1.NW_016107755v1   I 463 C 0
s otoGar3.GL873550           241253 49 +  18854210 ttttttttaagtgagtagaagttttaaa-ttcttat---gtctagtttatcc-----a
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e dasNov3.JH569887            17191  0 -     22419 C
e proCoq1.NW_012149775v1      94792 338 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e aotNan1.NW_018496904v1     312401 291 -    383796 I

a score=174075.000000
s hg38.chr6_GL000254v2_alt  1408507 17 +   4827813 ttttt----tttcttttacag
s panTro5.chr6             30281770 17 + 175400573 ttttt----tttcttttacag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512466 17 + 173848474 ttttt----tttcttttacag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219354 17 +   2037526 ttttt----tttcttttacag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892382 17 + 122973662 ttttt----tttcttttacag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766222 17 + 172585720 ttttt----tttcttttacag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30061358 17 - 170955103 ttttt----tttcttttacag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     310668 17 +   1495729 ttttt----tttcttttacag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     408550 17 -    863181 ttttt----tttcttttacag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29560630 17 -  71996105 ttttt----tttcttttatag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     244441 17 -    735854 ttttt----tttcttttacag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     198774 17 -   1829203 ttttt----ttttttctacag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30370263 17 + 171630274 ttttt----attcttttacag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           194516 21 +    515838 tttttaaaaaatcttttacag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     826661 19 -   1771730 ttttt--attttcttttacag
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           241302 17 +  18854210 ttttt----tttcatttatgg
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569887            17191 17 -     22419 ttttt----tttcttttatag
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e proCoq1.NW_012149775v1      94792 338 -   1411461 I
e canFam3.chr35            26286736 628 +  26524999 I
e aotNan1.NW_018496904v1     312401 291 -    383796 I

a score=388652.000000
s hg38.chr6_GL000254v2_alt  1408524 34 +   4827813 ctagtgctttctgtgtcct--aagaaatctttgc----tt
s panTro5.chr6             30281787 34 + 175400573 ctagtgctttctgtgtcct--aagaaatctttgc----tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512483 34 + 173848474 ctagtgctttctgtgtcct--aagaaatctttgc----tt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219371 34 +   2037526 ctagtgctttctgtgtcct--aagaaatctttgc----tt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892399 34 + 122973662 ctagtgctttctatgtcct--aagaaatctttgc----tt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766239 34 + 172585720 ctagtgctttctgtgtcct--aagaaatctttgc----tt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30061375 34 - 170955103 ctagtgctttctgtgtcct--aagaaatctttgc----tt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     310685 34 +   1495729 ctagtgctttctgtgtcct--aagaaatctttgc----tt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     408567 34 -    863181 ctagtgctttctgtgtcct--aagaaatctttgc----tt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29560647 34 -  71996105 ctagtgctttctgtgtcct--aagaaatctttgc----tt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     244458 34 -    735854 ctagtgctttctgtgtcct--aagacatctttgc----tt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     198791 34 -   1829203 ctactgctttctgtgtcct--aagaaatctttgc----tt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30370280 34 + 171630274 ctagtgctttttgtgtcct--aagaaacctttgc----tt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           194537 34 +    515838 gtagtgctttttgtgtcct--aagaaacctttgc----tt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     826680 34 -   1771730 ctagtgctttttgtgtcct--aagaaacctttgc----tt
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1      95130 27 -   1411461 ctagtgctttttgtgtcct--aagaaa-----------tt
i proCoq1.NW_012149775v1   I 338 C 0
s otoGar3.GL873550           241319 38 +  18854210 ctagtgctttttgtgtcct--aagaaatctatgcatactt
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569887            17208 32 -     22419 atagtgctttttgtgttgttgaaggaaccttt--------
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e canFam3.chr35            26286736 628 +  26524999 I
e aotNan1.NW_018496904v1     312401 291 -    383796 I

a score=217970.000000
s hg38.chr6_GL000254v2_alt  1408558 18 +   4827813 tgaggttataaCTCATTG
s panTro5.chr6             30281821 18 + 175400573 tgaggttataaTTCATTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512517 18 + 173848474 tgaggttataaTTCATTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219405 18 +   2037526 tgaggttataaTTCATTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892433 18 + 122973662 tgaggttataaTTCATTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766273 18 + 172585720 tgaggttataaTTCATTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30061409 18 - 170955103 tgaggttataaTTCATTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     310719 18 +   1495729 tgaggttataaTTCATTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     408601 18 -    863181 TGAGATTATAATTCATTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29560681 18 -  71996105 TGAGGTTGTAATTCATTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     244492 18 -    735854 taaggttataaTTCATTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     198825 18 -   1829203 tgaggttataaTTCATTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30370314 18 + 171630274 tgaggttataaTTCATTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           194571 18 +    515838 tgaggttataaTTCATTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     826714 18 -   1771730 tgaggttataaTTCAATG
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1      95157 18 -   1411461 caaggttataaTTTATTA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           241357 18 +  18854210 caaggttataaTTCATAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26287364 18 +  26524999 tgagattttatctcattg
i canFam3.chr35            I 628 I 3
s dasNov3.JH569887            17240 13 -     22419 -----ctatacatcaagg
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               288996 1887 + 123392446 I
e mm10.chr17               58030221 2449 -  94987271 I
e aotNan1.NW_018496904v1     312401 291 -    383796 I

a score=56079.000000
s hg38.chr6_GL000254v2_alt  1408576 4 +   4827813 GATA
s panTro5.chr6             30281839 4 + 175400573 GATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512535 4 + 173848474 GATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219423 4 +   2037526 GATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892451 4 + 122973662 GATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766291 4 + 172585720 GATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30061427 4 - 170955103 GATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     310737 4 +   1495729 GATA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     408619 4 -    863181 GATA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29560699 4 -  71996105 GATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     244510 4 -    735854 GATA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     198843 4 -   1829203 GATA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30370332 4 + 171630274 GATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           194589 4 +    515838 GATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     826732 4 -   1771730 GATA
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               290883 4 + 123392446 gata
i micMur3.chr6             I 1887 C 0
s proCoq1.NW_012149775v1      95175 4 -   1411461 GATA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           241375 4 +  18854210 GATA
i otoGar3.GL873550         C 0 I 288
s canFam3.chr35            26287385 4 +  26524999 ttta
i canFam3.chr35            I 3 C 0
e mm10.chr17               58030221 2449 -  94987271 I
e dasNov3.JH569887            17253 0 -     22419 C
e aotNan1.NW_018496904v1     312401 291 -    383796 I

a score=1600054.000000
s hg38.chr6_GL000254v2_alt  1408580 130 +   4827813 TATTTTTAATCCCAGAATTTTTAGTTGTCTTGGAATTAGAATTGGAAGTTTGTTTAGGGGAGCCAGTCCTCAATGATGTCATAAATAAAAGTCCTTCCTTGATTATT------TGATTGCATATCTTATCTT-ATAC
s panTro5.chr6             30281843 130 + 175400573 TATTTTTAATCCCAGAATTTTTAGTTGTCTTGGAATTAGAATTCGAAGTTTGTTTAGGGGAGCCAGTCCTCAATGATGTCATAAATAAAAGTCCTTCCTTGATTATT------TGATTGCATATCTTATCTT-ATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512539 130 + 173848474 TATTTTTAATCCCAGAATTTTTAGTTGTCTTGGAATTAGAATTCGAAGTTTGTTTAGGGGAGCCAGTCCTCAATGATGTCATAAATAAAAGTCCTTCCTTGATTATT------TGATTGCATATCTTATCTT-ATAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219427 130 +   2037526 TATTTTTAATCCCAGAATTTTTAGTTGTCTTGGAATTAGAATTGGAAGTTTGTTTAGTGGAGCCAGTCCTCAATGATGTCATAAATAAAAGTCCTTCCTTGATTATT------TGATTGCACATCTTATCTT-ATAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892455 128 + 122973662 TATTTTTAATCCCAGAATTTTTAGTTGTCTTGGAATTAGAATTGGAAGTTTGCTTAGGGGAGACAGTCCTCAATGATGTCATAAATAAAAGTCCTTCCTTGATTATT------TGATTGCATATCTTATAC---TAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766295 130 + 172585720 TATTTTTAATCCCAGAATTTTTAGTTGTCTTGGAATTAGAATTGGAGGTTTGTTTAGGGGAGCCAGTCCTCAATGATGTCATAAATAAAAGTCCTTCCTAGGTTATT------TGATTGCATATCTTATTTT-ATAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30061431 130 - 170955103 TATTTTTAATCCCAGAATTTTTAGTTGTCTTGGAATTAGAATTGGAGGTTTGTTTAGGGGAGCCAGTCCTCAATGATGTCATAAATAAAAGTCCTTCCTAGGTTATT------TGATTGCATATCTTATCTT-ATAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     310741 130 +   1495729 TATTTTTAATCCCAGAATTTTTAGTTGTCTTGGAATTAGAATTGGAGGTTTGTTTAGGGGAGCCAGTCCTCAATGATGTCATAAATAAAAGTCCTTCCTAGGTTATT------TGATTGCATATCTTATCTT-ATAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     408623 125 -    863181 TATTTTTAATCCCAGAATTTTTAGTTGTCTTGGAATTAGAATTGGAGGCTTGTTTAGGGGAGCCAGTCCTCAATGATGTCATAAATAAAAGTCCTTCCTAGGTTATT------TGATTGCATATC-----TT-ATAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29560703 130 -  71996105 TGTTTTTAATCCCAGAATTTTTAGTTGTCGTGGAATTAGAATTGGAGGTTTGTTTAGGGGAGCCAGTCCTCAATGATGTCATAAGTAAAAGTCCTTCCTAGGTTATT------TGATTGCATATCTTATCTT-ATAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     244514 130 -    735854 TATTTTTAATCCCAGAATTTTTAGTTGTCTTGGAATTAGAATTGGAGGCTTGTTTAGGGGAGCCAGTCCTCAATGATGTCATAAATAAAAGTCCTTCCTAGGTTATT------TGATTGCATATCTTATCTT-ATAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     198847 130 -   1829203 TATTTTTAATCCCAGAATTTTTAGTTGTCTTGGAATTAGAATTGGAGGTTTGTTTAGGGGAGCCAGTCCTCAATGATGTCATAAATAAAAGTCCTTCCTTAGTTATT------TGATTGCATATCTTATCTT-ATAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30370336 125 + 171630274 TATTTTTAATCCCAGCATTTTTAGTTGTCTTGGAATTGGAATTGGAGGATTATTTAAGGGAGCTAGTCCTCAATGATGTCGTAAATAAAAGTCCTTCCTTGATTATT------TAATTGCA-----TATCTT-ATAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           194593 130 +    515838 TATTTTTAATCCCAGCATTTTTAGTTGCCTTGGAATTGGAATTGGAGAATTATTTAAGGGAGCTAGTCCTCAATGATGTCGTAAATAAAAGTCCTTCCTTGATTATT------TAATTGCATATCTTATCTT-ATAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     826736 130 -   1771730 TATTTTTAATCCCAGCATTTTTAGTTGTCTTGGAATTGGAATTGGAGAATTATTTAAGGGAGCTAGTCCTCAATGATGTCGTAAATAAAAGTCCTTCCTTGATTATT------TAATTGCATATCTTATCTT-ATAC
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               290887 125 + 123392446 tgtttttaatcccaacatttttagttgtcttaaattt-gagttggagagttgtttaggggagctagtcctccacaatctcataaataaaaatcTCTCCTTGATTAT----------TTGAGTATCTTATCTT-GTAC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      95179 129 -   1411461 TGTTTTTAATCCCAACATTTTTAGTTGTCTTAAAGTT-GAGTTGGAGAATCGTTTAGGGGAGCTAGTCTTCCACAGTCTCATAAATAAAAGTCCTTCCTTGATTATT------TAATTGAGTATCTCATGTT-GTGC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           241667 133 +  18854210 TATTTTTAATCCTAGTCTTTCTGG-CATCTTAAAGTT-GAGCTAGAAGATTATTTAAGGGAGCTAACCCTC--GAGTTTCATAAATAAAAGACTTACCTTGATTATTTATTAATAATTGAGTATTTCATCTTAATAC
i otoGar3.GL873550         I 288 C 0
s canFam3.chr35            26287389 122 +  26524999 ggtttttagtcc-aggatttttagttgtcttgaATTT------GAAGGATTGTTTCGGGGAGCTAGTCATCTACAATGTCATAAATAAAACTCCCTCCTTAATTTTT------CACGTGAATGT-TTGTCTT-ATAC
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            17253 106 -     22419 -----------ccaGCATTCTTAGCTGTCCTGAAGTT------GGAGGGTTTTTTAGGAGAACCAGTCCTCCACAGTGGCATACACACAAG-CCTTCTCTGATTCTT------TGAGTG------TCACCTT-ACAC
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58030221 2449 -  94987271 I
e aotNan1.NW_018496904v1     312401 291 -    383796 I

a score=241775.000000
s hg38.chr6_GL000254v2_alt  1408710 19 +   4827813 TACTAGAAACTCATCTTTT
s panTro5.chr6             30281973 19 + 175400573 TACTAGAAACTCATCTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512669 19 + 173848474 TACTAGAAACTCATCTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219557 19 +   2037526 TACTAGAAACTCATCTTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892583 19 + 122973662 TACTAGAAACTCATCTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766425 19 + 172585720 TACTAGAAACTCATCTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30061561 19 - 170955103 TACTAGAAACTCATCTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     310871 19 +   1495729 TACTAGAAACTCATCTTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     408748 19 -    863181 TACTAGAAACTCATCTTTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29560833 19 -  71996105 TACTAGAAACTCATCTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     244644 19 -    735854 TACTAGAAACTCATCTTTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     198977 19 -   1829203 TACTAGAAACTCATCTTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30370461 19 + 171630274 TACTAGAAACTCTTCTTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           194723 19 +    515838 CACGAGAAActcttctttg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     826866 19 -   1771730 TACTAGAAActcttctttg
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               291012 19 + 123392446 TGCTAGAAACTCTTCTTTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      95308 19 -   1411461 TGCTAGAAACTCTTCTTTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           241800 17 +  18854210 CACTAGAAA--CTTCTTTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58032670 18 -  94987271 TATTAGATATTCTTTTTG-
i mm10.chr17               I 2449 C 0
s canFam3.chr35            26287511 16 +  26524999 TGCTAAAACCTCTGTG---
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            17359 19 -     22419 TGCTAGGAGCTCTCCTTTG
i dasNov3.JH569887         C 0 C 0
e aotNan1.NW_018496904v1     312401 291 -    383796 I

a score=4532996.000000
s hg38.chr6_GL000254v2_alt  1408729 284 +   4827813 GGTGAA-TATAACAAGTCCTTTCTTTCCTCATAGGTTCCAGGAGAAGGAAGACTCTTGACCTTTTTCCTGGGCAACT---CTACAGTCCCTCCCTCCT----TTCGGAAGGTGAAGGATACTGGGTTTTTAG-------AT----------------------------------------------------------GCCTTGTCCATCCTGTCTGGTTGCAATG--TTTTGCTCCCAGAA-GAGAATCAGATCATCATGTGGGGATTACCATTGTTCCTGGAGTACTCCTACCCTTAGTTGAATTTCCTTATTAAAGTTATATTTTTCTATAAGACCCTGACA-TATGTATGttactt
s panTro5.chr6             30281992 284 + 175400573 GGTGAA-TATAACAAGTCCTTTCTTTCCTCATAGGTTCCAGGAGAAGGAAGACTCTTGACCTTTTTCCTGGGCAACT---CTACAGTCCCTCCCTCCT----TTCGGAAGGTGAAAGATACTGGGTTTTTAG-------AT----------------------------------------------------------GCCTTGTCCATCCTGTCTGGTTGCAATG--TTTTGCTCCCAGAA-GAGAATCAGATCATCATGTGGGGATTACCATTGTTCCTGGAGTACTCCTACCCTTAGTTGAATTTCCTTATTAAAGTTATATTTTTCTATAAGACCCTGACA-TATGTATGTTACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512688 284 + 173848474 GGTGAA-TATAACAAGTCCTTTCTTTCCTCATAGGTTCCAGGAGAAGGAAGACTCTTGACCTTTTTCCTGGGCAACT---CTACAGTCCCTCCCTCCT----TTCGGAAGGTGAAAGATACTGGGTTTTTAG-------AT----------------------------------------------------------GCCTTGTCCATCCTGTCTGGTTGCAATG--TTTTGCTCCCAGAA-GAGAATCAGATCATCATGTGGGGATTACCATTGTTCCTGGAGTACTCCTACCCTTAGTTGAATTTCCTTATTAAAGTTATATTTTTCTATAAGACCCTGACA-TATGTATGTTACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219576 284 +   2037526 GGTGAA-TATAACAAGTCCTTTCTTTCCTCATAGGTTCCAGGAGAAGGAAGACTCTTGACCTTTTTCCTGGGCAACT---CTACAGTCCCTCCCTCCT----TTCGGAAGGTGAAGGATACTGGGTTTTTAG-------AT----------------------------------------------------------GCCTTGTCCATCCTGTCTGGTTGCAATG--TTTTGCTCCCAGAA-GAGAATCAGATCATCATGTGGGGATTACCATTGTTCCTGGAGTACTCCTACCCTTAGTTGAATTTCCTTATTAAAGTTATATTTTTCTATAAGACCCTGACA-TATGTATGTTACTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892602 282 + 122973662 GGTGAA-TATAACAAGTCCTTTCTTTCCTCATAGGTTCCAGGAGAAGGAAGACTCTTGACCCTTTTCCTGGGCAACT---CAACAGTCCCTCCGTCCT----TTCGGAAGGTGAAGGATACTGGGTTTTTAG-------AT----------------------------------------------------------GCCTTGTCCATCCTGTCTGGTTGCAATG--TTTTGCTCCCAGAA-GAGAATCAGATCATCATGTGGGGATTACCATTGTTCCTGGAGTACTCCTACCCTTAGTTGAATTTCCTTATTAAAGTTCTATTTTTCTGTAAGACCCTGACA-TATGTATGTTAC--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766444 284 + 172585720 GGTGAA-TATAACAAGTCCTTTCTTTCCTCATAGGTTCCAGGAGAAGGAAGACTCTTGACCTTTTTCCTGGGCAACT---CAACAGTCCCTCCCTCCT----TTTGGAAGGTGAAGGATACTGGGTTTTTAG-------AT----------------------------------------------------------GCCTTGTCCATCCCATCTGGTTGCAATG--TGTTGCTCCTAGAA-GAGAGTCAGATCATCATGTGGGGATTACCATTGTTCCTGGAGTACTCCTACCCTTAATTGAATTTCCTTATTAAAGTTATATTTTCCTAAAAGACCCTGACA-TATGTATGttactt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30061580 284 - 170955103 GGTGAA-TATAACAAGTCCTTTCTTTCCTCATAGGTTCCAGGAGAAGGAAGACTCTTGACCTTTTTCCTGGGCAACT---CAACAGTCCCTCCCTCCT----TTTGGAAGGTGAAGGATACTGGGTTTTTAG-------AT----------------------------------------------------------GCCTTGTCCATCCCATCTGGTTGCAATG--TGTTGCTCCTAGAA-GAGAGTCAGATCATCATGTGGGGATTACCATTGTTCCTGGAGTACTCCTACCCTTAATTGAATTTCCTTATTAAAGTTATATTTTCCTAAAAGACCCTGACA-TATGTATGTTACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     310890 284 +   1495729 GGTGAA-TATAACAAGTCCTTTCTTTCCTCATAGGTTCCAGGAGAAGGAAGACTCTTGACCTTTTTCCTGGGCAACT---CAACAGTCCCTCCCTCCT----TTTGGAAGGTGAAGGATACTGGGTTTTTAG-------AT----------------------------------------------------------GCCTTGTCCATCCCATCTGGTTGCAATG--TGTTGCTCCTAGAA-GAGAGTCAGATCATCATGTGGGGATTACCATTGTTCCTGGAGTACTCCTACCCTTAATTGAATTTCCTTATTAAAGTTATATTTTCCTAAAAGACCCTGACA-TATGTATGTTACTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     408767 284 -    863181 GGTGAA-TATAACAAGTCCTTTCTTTCCTCATAGGTTCCAGGAGAAGGAAGACTCTTGACCTTTTTCCTGGGCAACT---CAACAGTCCCTCCCTCCT----TTTGGAAGGTGAAGGATACTGGGTTTTTAG-------AT----------------------------------------------------------GCCTTGTCCATCCCATCTGGTTGCAATG--TGTTGCTCCTAGAA-GAGAGTCAGATCATCATGTGGGGATTACCGTTGTTCCTGGAGTACTCCTACCCTTAATTGAATTTCCTTATTAAAGTTATATTTTCCTAAAAGACCCTGACA-TATGTATGTTACTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29560852 284 -  71996105 GGTGAA-TATAACAAGTCCTTTCTTTCCTCATAGGTTCCAGGAGAAGGAAGACTCTTGACCTTTTTCCTGGGCAACT---CAACAGTCCCTCCCTCCT----TTTGGAAGGTGAAGGATACTGGGTTTTTAG-------AT----------------------------------------------------------GCCTTGTCCATCCCATCTGGTTGCAATG--TGTTGCTCCTAGAA-GAGAGTCAGATCATCATGTGGGGATTACCATTGTTCCTGGAGTACTCCTACCCTTAATTGAATTTCCTTATTAAAGTTATATTTTCCTAAAAGATCCTGACA-TATTTATGTTACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     244663 284 -    735854 GGTGAA-TATAACAAGTCCTTTCTTTCCTCATAGGTTCCAGGAGAAGGAAGACTCTTGACCTTTTTCCTGGGCAACT---CAACAGTCCCTCCCTCCT----TTTGGAAGGTGAAGGATACTGGGTTTTTAG-------AT----------------------------------------------------------GCCTTGTCCATCCCATCTGGTTGCAATG--TGTTGCTCCTAGAA-GAGAGTCAGATCATCATGTGGGGATTACCGTTGTTCCTGGAGTACTCCTACCCTTAATTGAATTTCCTTATTAAAGTTATGTTTTCCTAAAAGACCCTGACA-TATGTATGTTACTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     198996 284 -   1829203 GGTGAA-TATAACAAGTCCTTTCTTTCCTCATAGGTTCCAGGAGAAGGAAGACTCTTGACCTTTTTCCTGGGCAACT---CAACAGTCCTTCCCTCCT----TTTGGAAGGTGAAGGATACTGGGTTTTTAG-------AT----------------------------------------------------------GCCTTGTCCATCCCACCTGGTTGCAATG--TTTTACTCCTAGAA-GAGAGTCAGATCATCATGTGGGGATTACCGTTGTTCCTGGAGTACTCCTACCCTTAATTGAATTTCCTTATTAAAGTTATATTTTCCTAAAAGACCCTGACA-TACATATGttactt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30370480 284 + 171630274 AGTGAA-TATAACAAGTCCTTTCTTTCCTCATAGGTTCCAGGAGAAGGAAGACTCTTGACCTTTTTTCTGGACAACT---CAACAGTCCCTCCCTCCT----TTTGGAAAGTGAAGGATGCTGGGTTCTTCA-------AT----------------------------------------------------------GCCTTATCCATCCCATCTGGTTGCAATG--TTTTGCTCCCAGAA-GAGAATCAGATCATCATGTGGGGATTATCATTGTTCCCAGAGTACTCTTACCTTTAGTTGAATTTCCTTATTAAAGTTATATTTTTCCATAAGACCCTGACA-TATGTATGTTACTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           194742 284 +    515838 ggtgaa-tataacaagtcctttctttcctcataggttccaGGAGAAGGAAGACTCTTGACCTTTTTTCTGGGCAACT---CAACACTCCCTCCTTCCT----TTTGGAAAGTGAAGGATGCTGGGTTCCTCG-------AT----------------------------------------------------------GCCTTGTCCATCCCGTCTGGTTGCAAAG--TTTTGCTCCCAGAA-GAGAATCAGATCATCATGTGCAGATTATCATTGTTCCCAGAGTACTCTTAGCTTTAGTTGAATTTCCTTATTAAAGTTATGTTTTTCCATAAGACCCTGACA-TATGTATGTTACTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     826885 284 -   1771730 ggtgaa-tataacaagtcctttctttcctcataggttccaGGAGAAGGAAGACTCTTGACCTTTTTTGTGGGCAACT---CAACAGTCCCTCCCTCCT----TTTGGAAAGTGAAGGATTCTGGGTTCTTCA-------AT----------------------------------------------------------GCCTTGTCCATCCCGTCTGGTTGCAATG--TTTTGCTCCCAGAA-GAGAATCAGATCATCATGTGGGGATTATCATTGTTCCCAGAGTACTCTTGCCTTTAGTTGAATTTCCTTATTAAAGTTATATTTTTCCATAAGACCCTGACA-TATGTATGttactt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     312692 279 -    383796 GGTGAA-TATAACAAGTCCTTTCTTTCCTCATAGGTTCCAGGAGAAGGAAGACTCTTGACCTTTTTTCTGGGCAACT---CAACAGTCCCTCC---------TTTTGAAAGTGAAAGATGCTGGGTTCTTCA-------AT----------------------------------------------------------GCCTTGTACATCCCGTCTGGTTGCAATG--TTTTGCTCCCAGAA-GAGAATTAGAACATCATGTGGGGATTATCACTGTTCCCAGAGTACTCTTACCTTTAGTTGAATTTCCTTATTAAAGTTCTATTTTTCCATAAGACCCTGACA-TATGTATGTTACTT
i aotNan1.NW_018496904v1   I 291 C 0
s micMur3.chr6               291031 293 + 123392446 GGTTTACTATAACAAGTCCCTTCTTTCCTCATAGGTTCCAAGAGAAGGAAGATTCTTGATCTTTTTCCTGGGCAGCT---CCACAGTCTGTCCCTCCTCTTCCTTGGAAGGTGAAGAATACTGAGTTCTTGGACAAGGGAT----------------------------------------------------------GCCTTGTCCATCCCTTCTGGTTGCAATG--TTTTGCTCCCAGAG-GAGAATCAAATCATCATATGAGGATTACTATTGTCCCTGGAGTAA-GATACCTCTAGTTGAGTTTCCTTATTAAAATTGTATTTTTCTATAAGACCCTGACA-TATG--TGTTACAT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      95327 293 -   1411461 GGTTAACTATAACAAGTCCTTTCTTTCCTCATAGGTTCCAGGAGAAGGAAGATTCTTGATCTTTTTCCTGGGCAATT---CCACAGTCCGTCCCTCTTCTTCCTTGGAAGGTGAAGGATACTGAGTTCTTGGACAAGAAAT----------------------------------------------------------GCCTTGTCCACCTCTTCTAGTTGCAATG--TGTTGCTCCCAGAG-GAGAATCAAATCATCATATGGGGATTACCATTGTCCCTGGAGTAA-GATACCCCTAGTTGAGTTTCCTTATTAAAGTTGTATTTTTCTATAAGACCCTGACA-TATG--TGttattt
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           241817 285 +  18854210 AGTTAA-TATAACAAGTCCTTTCTTTCCTCATAGGTTTCAGGAGAAGGAAGACTCTTGATCTTCTACCTGGGAAACT---CCACAGTCCCTCCTTCTTCTTCCTTGGAAGGTGAAGGATACTTGATTCTTG--------AT----------------------------------------------------------GCCTTGTCCATC-CTTCTGGTTGCAGTGTTTTTTGCTTCCAGAG-GAGAATCAAATCATCATGTGGGG-CTAACATTGTCCCTGGAGTACTTCTACACCTAGTTGAGTTTCCTTATTAAAGTTGTATTTTTCTATAAGACCCTGACA-TATA--TGTTACTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58032688 252 -  94987271 GTTAAA-TATAACGAGTC--TTCTTCCTCCATAGGTTTCAGGAAAAGGAAGATTCTTGACCCTTTTTTCTGGCAACCCAGCAACAATCCTTTCCTTCT----CTCGGAA-GTGAA-GATACTCG--TCTTTG-------AT----------------------------------------------------------GCCTCCTTGGTCCCCTCCGGCTACCATG--CTTTGTTCTCAGAA-TA-----AGATCGTCG------------------ACCCAGAATACTCCTTTCCCT-TTTGAAT----TTACTAAAGT--TATTTTTCTATGAAGCCTTGATGTTATGTGTGTTACTC
i mm10.chr17               C 0 I 107
s canFam3.chr35            26287527 274 +  26524999 CCTAAA-TATAATGAGTCCTTTCTTTCTCCATAGGTTCCAGGAGAAGGAAGACTCTTGATTTTCTTTCTGGGCACCT---TATCAGTTCTCCCTCTTC----CTTGAAAGGTGAGGGATATTGGGTTCTTAG-------AT----------------------------------------------------------GCTTTGTCTATC----CTGGTTGCAGTG--CTTTGCTCCCA----TAGACAGAGATTATCATGTGGGCATTACCATTGTCCCTACAGTACACCTA-CTGTAGTTGAGTTTCTTTATCAAGGTTACGTTTTTCTATATAAGCCAGACA-TACC--TGTTATTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            17378 333 -     22419 GTTTAA-T-TAACAGGACTTTTTTTTCCCCATAGGTTCCAGGAGAAGGAAGACTCTTGATCCTCCTTCTGAGCTGAA---CAGCAGTGCCTCCCTCTCCCG-CCTTGAAGGTGAAGGATGCTGGGTCTTCAA-------GTCCTGTCCATCCCCTCTGGTCACAACACCTCCCTCTCCTGAAGGATGATGGGTCTTCAAGTCGTGTCCATCTCCTCTGGCTGCAACA--TCTTGCTCCCAGAAGGAGTAGCAG---GTCGTGTGGAGACTGCCTTTGTCCTCAGGTCTCTCCTATCCCTAGTTGAGTTTCCTTATTAAAGTTATATTTCTCTGTAAGATTT------TATGTGATTT----
i dasNov3.JH569887         C 0 C 0

a score=1587785.000000
s hg38.chr6_GL000254v2_alt  1409013 115 +   4827813 ataatctgtcttattccaaaaggaatttaaatgagtttccagaga-tatatt----------------------------------------------------------tatat---gaaaaagaaaa-----gggggaaa-------aattaggacaaaaaagtagagtcaggaatgaggctaatat
s panTro5.chr6             30282276 115 + 175400573 ATAATCTGTCTTATTCCAAAAGGAATTTAAATGAGTTTACAGAGA-TATATT----------------------------------------------------------TATAT---GAAAAAGAAAA-----GGGGGAAA-------AATTAGGACAAAAAAGTAGAGTCAGGAATGAGGCTAATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30512972 115 + 173848474 ATAATCTGTCTTATTCCAAAAGGAATTTAAATGAGTTTACAGAGA-TATATT----------------------------------------------------------TATAT---GAAAAAGAAAA-----GGGGGAAA-------AATTAGGACAAAAAAGTAGAGTCAGGAATGAGGCTAATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219860 115 +   2037526 ATAATCTGTCTTATTCCAAAAGGAATTTAAATGAGTTTACAGAGA-TATATT----------------------------------------------------------TATAT---GAAAAAGAAAA-----GGGGGAAA-------AATTAGGACAAAAAAGTAGAGTCAGGAATGAGGCTAATAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892884 110 + 122973662 -----CTGTCTTATTCCAAAAGGAATTTAAATGAGTTTACAGAGA-TATATT----------------------------------------------------------TATAT---GAAAAAGAAAA-----GGGGGAAA-------AATTAGGACAAAAAAGTAGAGTCAGGAATGAGGCTAATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766728 109 + 172585720 ataatctgtcttattccaaaaggaatttaaatgagtttacagaga-----------------------------------------------------------------tacat---gaaaaagaaaa-----gatggaaa-------aataaggacaaaaaagtagagtcaggaatgaggctaatat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30061864 109 - 170955103 ATAATCTGTCTTATTCCAAAAGGAATTTAAATGAGTTTACAGAGA-----------------------------------------------------------------TACAT---GAAAAAGAAAA-----GATGGAAA-------AATAAGGACAAAAAAGTAGAGTCAGGAATGAGGCTAATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     311174 109 +   1495729 ATAATCTGTCTTATTCCAAAAGGAATTTAAATGAGTTTACAGAGA-----------------------------------------------------------------TACAT---GAAAAAGAAAA-----GATGGAAA-------AATAAGGACAAAAAAGTAGAGTCAGGAATGAGGCTAATAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     409051 109 -    863181 ATAATCTGTCTTATTCCAAAAGGAATTTAAATGAGTTTACAGAGA-----------------------------------------------------------------TACAT---GAAAAAGAAAA-----GATGGAAA-------AATAAGGACAAAAAAGTAGAGTCAGGAATGAGGCTAATAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29561136 109 -  71996105 ATAATCTGTCTTATTCCAAAAGGAATTTAAATGAGTTTACAGAGA-----------------------------------------------------------------TACAT---GAAAAAGAAAA-----GATGGAAA-------AATAAGAACAAAAAAGTAGAGTCAGGAATGAGGCTAATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     244947 109 -    735854 ATAATCTGTCTTATTCCAAAAGGAATTTAAATGAGTTTACAGAGA-----------------------------------------------------------------TACAT---GAAAAAGAAAA-----GATGGAAA-------AATAAGGACAAAAAAGTAGAGTCAGGAATTAGGCTAATAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     199280 109 -   1829203 ataatctgccttattccaaaaggaatttaaatgagtttacagaga-----------------------------------------------------------------tatat---gaaaaaaaaAA-----GAGGGAAA-------AATAAGGACAAAAAAGTAGAGTCAGGAATGAGGCTAATAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30370764 109 + 171630274 ATAATCTACCTTATTCCAAAAGGAATTTAAATGAGTTTACAGAGA-----------------------------------------------------------------TATAT---GAAAACGAAAA-----GGGGGAAA-------AATAAGGACAAAAAAGTAGAGTCAGAAATGAGGCTAATGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           195026 109 +    515838 ATAATCTACCTTATTTCAAAAGAAATTTAAATGAGTTTACAGAGA-----------------------------------------------------------------TACAC---GAAAACGAAAA-----GGGGGAAA-------AATAAGGACAAAAATGTAGAGTCAGAAATGAGGCTAATGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     827169 109 -   1771730 ataatctaccttatttcaaaaggaatttaaatgagtttacagaga-----------------------------------------------------------------tacat---GAAAGTGAAAA-----GGGGGAAA-------AATAAGGACAAAAAAGTAGAGTCAGAAATGAGGCTAATGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     312971 109 -    383796 ATAATCTACCTTATTTCAAAAGGAATTTAAATGAGTTTACAGAGA-----------------------------------------------------------------TATAC---AAAAACGAAAA-----GGGGGAAA-------ACTAAGGACAAAAAAGTAGAGTCAGAAATGAGGCTAATGT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               291324 117 + 123392446 ATAATCTGTCTTTTTCC-AAAGGAATTTAAATGAGCTTACAAATA---TATT----------------------------------------------------------TGTAT---GAAAAAGAAAACTGGAGGGGGAAA-------AAAAAGAACAAAAAAATGGAGCCAGAAATAAGGCTAATAT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      95620 114 -   1411461 ataatctgtcttgttccaaaaggaatttaaatgagcttacagata---tatc----------------------------------------------------------tgtat---gaaaaagaaaactgagggg----a-------aaaaagaacaaaaaaagggagccagaaataaggctaatat
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           242102 109 +  18854210 CCAATCTGTCTTGGTCCAAAAGGAATTTAAGTGAGTTTACAGAGA---TATT----------------------------------------------------------TGTAT---GAAAAAG---------GGGGAAAA-------AACAAGGACAAAAAAATAGAACCAGAAATAAGGGTAGTAT
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               58033047 103 -  94987271 ATAATCGGTCTTATTCCAAAGGAAATTTAGGTGAAGT---AGAGA-----------------------------------------------------------------TATAG---ATATAAAAAAA-----GA---AAA-------AACTATAATAAAATGATGGAGTCTGGAATGAGGTTTTTAT
i mm10.chr17               I 107 I 2259
s canFam3.chr35            26287801 164 +  26524999 ATAAT--GTCTTGTTCCAAAAGGAATTTAAATGGATTTACAGAGAATATATT----CTTTCAGTAAGT------ATATCA----GCTACAAAAAATATAGTATAAATTAGTGTAT---GAGAAGGAAAA-----GGGAAAAAGGAAACTACCAAAGACAAAAAA-TGGAGGCAGGAATGAGACTAATAT
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            17711 169 -     22419 ATAATCTGCTTTCTTCCAACAGGAATGTAAATGAGCTAAGAGATA---TATTTGTCTTTTCAGCAAACTTACCAATTTCAAAAGataatataaattagtatatata----tatataaaGAAAAAGGGGA-----GAGGAGAA-------AACAAGGGGAAAAAA-TGGAGCCAGAAATGATGCTAATAC
i dasNov3.JH569887         C 0 C 0

a score=308391.000000
s hg38.chr6_GL000254v2_alt  1409128 22 +   4827813 aaacaaaaagcaATTGTAAGTA
s panTro5.chr6             30282391 22 + 175400573 AAACAAAAAGCAATTGTAAGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30513087 22 + 173848474 AAACAAAAAGCAATTGTAAGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219975 22 +   2037526 AAACAAAAAGCAATTGTAAGTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74892994 22 + 122973662 AAACAAAAAGCAATTTTAAGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766837 22 + 172585720 aaacaaaaagcaATTGTAAGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30061973 22 - 170955103 AAACAAAAAGCAATTGTAAGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     311283 22 +   1495729 AAACAAAAAGCAATTGTAAGTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     409160 22 -    863181 AAACAAAAAGCAATTGTAAGTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29561245 22 -  71996105 AAACAAAAAGCAATTGTAAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     245056 22 -    735854 AAACAAAAAGCAATTGTAAGTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     199389 22 -   1829203 AAACAAAAAGCAATTGTAAGTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30370873 22 + 171630274 AAACAAAAAGCAATTATAAGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           195135 22 +    515838 AAACAAAAAGCAATTATAAGTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     827278 22 -   1771730 AAACAAAAAGCAATTATAAGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     313080 22 -    383796 AAACAAAAAGCAATTATAAGTA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               291441 18 + 123392446 ----AAAAAGCATTTATAAGTA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      95734 19 -   1411461 a---aaaaagcatttataagTA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           242213 17 +  18854210 A---AAAAATCATT--TAAGTA
i otoGar3.GL873550         I 2 C 0
s canFam3.chr35            26287965 18 +  26524999 ----AAAAAGTAATTATgggca
i canFam3.chr35            C 0 I 189
s dasNov3.JH569887            17880 19 -     22419 ---AAAAAATCAATTGTAAGAA
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58033150 2259 -  94987271 I

a score=169196.000000
s hg38.chr6_GL000254v2_alt  1409150 13 +   4827813 TTGCCATACTATT
s panTro5.chr6             30282413 13 + 175400573 TTGCCATACTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30513109 13 + 173848474 TTGCCATACTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     219997 13 +   2037526 TTGCCATACTATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74893016 13 + 122973662 TTGCCATACTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766859 13 + 172585720 TTGCCATACTATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30061995 13 - 170955103 TTGCCATACTATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     311305 13 +   1495729 TTGCCATACTATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     409182 13 -    863181 TTGCCATACTATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29561267 13 -  71996105 TTGCCATACTATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     245078 13 -    735854 TTGCCATACTATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     199411 13 -   1829203 TTGCCATACTATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30370895 13 + 171630274 TTGCCACTCTACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           195157 13 +    515838 TTGCCACTCTACT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     827300 13 -   1771730 TTGCCACTCTACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     313102 13 -    383796 TTGCCACTCTACT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               291459 13 + 123392446 TTCCCACACTATC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      95753 13 -   1411461 TTCCCACACTATC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           242230 13 +  18854210 TTACCACACTATC
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569887            17899 11 -     22419 --TCCTTACTATC
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58033150 2259 -  94987271 I
e canFam3.chr35            26287983 189 +  26524999 I

a score=1741057.000000
s hg38.chr6_GL000254v2_alt  1409163 126 +   4827813 TAAATCTATTTGGTTCCT-GAGTTTAGGTTAAGAAAAACTAGGAATTTGGATAGTGAGACATTTAACAGAAATTTTAACCAGATCTCTTTAGCATATAAATTTGGAC-AACAAAAAAT-CTGATACTAA
s panTro5.chr6             30282426 126 + 175400573 TAAATCTATTTGGTTCCT-GAGTTTAGGTTAAGAAAAACTAGGAATTTGGATAGTGAGACATTTAACAGAAATTTTAACCAGATCTCTTTAGCATATAAATTTGGAC-AACAAAAAAT-CTGATACTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30513122 126 + 173848474 TAAATCTATTTGGTTCCT-GAGTTTAGGTTAAGAAAAACTAGGAATTTGGATAGTGAGACATTTAACAGAAATTTTAACCAGATCTCTTTAGCATATAAATTTGGAC-AACAAAAAAT-CTGATACTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     220010 126 +   2037526 TAAATCTATTTGGTTCCT-GAGTTTAGGTTAAGAAAAACTAGGAATTTGGATAGTGAGACATTTAACAGAAATTTTAACCAGATCTCTTTAGCATATAAATTTGGAC-AACAAAAAAT-CTGATACTAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74893029 126 + 122973662 TAAATCTATTTGGTTCCT-GAGTTTAGGTTAAGAAAAACTAGGAATTTGGATAGTGAGACATTTAACAGAAATTTTAACCAGATCTCTTTAGCATATAAATTTGGAC-AACAAAAAAT-CTGATACTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766872 121 + 172585720 TAAATCTATTTGGTTCCT-GAGTTTAGGTTAAGAAAAACTAGGGATTTGGATAGTGAGACATTTAACAGAAATTTTAACCAGATCTCTTTAGCATATAAATTTGGAC-AGCAAAAAAA-CTGAT-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30062008 121 - 170955103 TAAATCTATTTGGTTCCT-GAGTTTAGGTTAAGAAAAACTAGGGATTTGGATAGTGAGACATTTAACAGAAATTTTAACCAGATCTCTTTAGCATATAAATTTGGAC-AGCAAAAAAA-CTGAT-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     311318 121 +   1495729 TAAATCTATTTGGTTCCT-GAGTTTAGGTTAAGAAAAACTAGGGATTTGGATAGTGAGACATTTAACAGAAATTTTAACCAGATCTCTTTAGCATATAAATTTGGAC-AGCAAAAAAA-CTGAT-----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     409195 121 -    863181 TAAATCTATTTGCTTCCT-GAGTTTAGGTTAAGAAAAACTAGGGATTTGGATAGTGAGACATTTAACAGAAATTTTAACCAGATCTCTTTAGCACATAAATTTGGAC-AGCAAAAAAA-CTGAT-----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29561280 121 -  71996105 TAAATCTATTTGGTTCCT-GAGTTTAGGTTAAGAAAAACTAGGGATTTGGATAGTGAGACATTTAACAGAAATTTTAACCAGATCTCTTTAGCATATAAATTTGGAC-AGCAAAAAAA-CTGAT-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     245091 121 -    735854 TAAATCTATTTGGTTCCT-GAGTTTAGGTTAAGAAAAACTAGGGATTTGGATAGTGAGACATTTAACAGAAATTTTAACCAGATCTCTTTAGCATATAAATTTGGAC-AGCAAAAAAA-CTGAT-----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     199424 115 -   1829203 TAAATCTATTTGGTTCCT-GAGTTTAGGTTAAGAAAAACTAGGGATTTGGATAGTGAGACATTTAACAGAAATTTTAACCAGATCTCTTTAGCATATAAATTTGGAC-AGCTAAAAA------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30370908 120 + 171630274 TAAATCTATTTGGTTCCT-GAATTTAGGGTAAGAAAAACTAGGAATTTGGAGAGTGAGACATTTCACAGAAATTCTGACCAGATCTCTTCAGTATATAAATTTGGAC-AATAAAAAAT-------CTAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           195170 126 +    515838 TAAGTCTATTTGGTTCCT-GAATTTAAGGTAAGAAAAACTAGGAATTTGGATATTGAGACCTTTCACAGAAATTTTAACCGGATCTCTTCAGCATATAAATCTGGAC-AACAAAAATT-CTGATACTAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     827313 125 -   1771730 TAAATCTATTTGGTTCCT-GAATTTAGGGTAAGAAAAACTAGGAATTTGGGTAGTGAGACATTTCACAGAAATTTTAACCAGATCTCTTCAGCATATAAATTTGGAC-AACAAAAAAT-CTGATACCA-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     313115 127 -    383796 TAAATCTATTTGGTTCCTAGAATTTAGGGTAAGTAAAACTAGGAATTTGGATAGTGAGACATTTCACAGAAATTTTAACCAGATCTCTTCAGCATATAAATTTGGAC-AACAAAAAAT-CTGATACTAC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               291472 123 + 123392446 TAAATCTGTTTGGTTTCT-CACTTTAGGGAAATGAAAAGTAGGAATGCAGATAGTGAGAGATTCAACAGAAATTTTAACCAGATCTATTTGGCCTATAAATTTGG----ACAAAAAAC-CTGATACTAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      95766 126 -   1411461 TAAATCTGTTTGGTTTCT-GACTTTAGGGAAATGAAAAGTAGGAATACAGATAGTGAGAGATTCAACAGAAGTTTTAACCAGATCTATTTGGCCTATAAATTTGGAC-AACAAAAAAT-CGGATACTAA
i proCoq1.NW_012149775v1   C 0 I 192
s otoGar3.GL873550           242243 127 +  18854210 TAAATCTATTTGGTTTCT-GACTTTAGGGAAACAAAAAGTAGGAATATGGATAGTGAGATATTCAACGGAAATTTTAACCAGATGTATTTAGCCTATGAATTTGGATGAGAAAAAAAT-CTAATACTAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26288172 123 +  26524999 TAAATGTATTTGGTTCCT-GAGTTTAGGGAAACAAAG--CAGGAGCCCAGATGCTGGGAGA-TAAGCAGATAACGTAACCAGATGTGTCTGACGTGTGAGCTGGAAC-AAGGAGAAGT-CTGATACTAA
i canFam3.chr35            I 189 C 0
s dasNov3.JH569887            17910 121 -     22419 CAAATCTATTTGATTACA-GAGTTTAAGAAAACAAAAA----GAGTTTGGATAGTGAGA--TTCAACTGAAAATTTAACCAAATCTATTTGGTATATAAGTTTGGAC-AACAAGAAATTCTGACACCAA
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58033150 2259 -  94987271 I

a score=4909.000000
s hg38.chr6_GL000254v2_alt  1409289 1 +   4827813 G
s panTro5.chr6             30282552 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30513248 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     220136 1 +   2037526 G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74893155 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30371028 1 + 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           195296 1 +    515838 G
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     827438 1 -   1771730 G
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     313242 1 -    383796 A
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               291595 1 + 123392446 G
i micMur3.chr6             C 0 I 518
s otoGar3.GL873550           242370 1 +  18854210 G
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26288295 1 +  26524999 G
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            18031 1 -     22419 G
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58033150 2259 -  94987271 I
e proCoq1.NW_012149775v1      95892 192 -   1411461 I
e colAng1.NW_012115577v1     199539 0 -   1829203 C
e manLeu1.NW_012107142v1     245212 0 -    735854 C
e chlSab2.chr17            29561401 0 -  71996105 C
e cerAty1.NW_012002535v1     409316 0 -    863181 C
e macNem1.NW_012012100v1     311439 0 +   1495729 C
e macFas5.chr4             30062129 0 - 170955103 C
e rheMac8.chr4             30766993 0 + 172585720 C

a score=152968.000000
s hg38.chr6_GL000254v2_alt  1409290 32 +   4827813 TAATGCCACTAAGTGATCACTATAGGTG----------------AGTA
s panTro5.chr6             30282553 32 + 175400573 TAATGCCACTAAGTGATCACTATAGGTG----------------AGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30513249 32 + 173848474 TAATGCCACTAAGTGATCACTATAGGTG----------------AGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     220137 32 +   2037526 TAATGCCACTAAGTGATCACTATAGGTG----------------AGTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74893156 32 + 122973662 TAATACCACTAAGTGATCACTATAGGTG----------------AGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30766993 21 + 172585720 -------ACTAAGTGATCACTATAG--------------------GTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30062129 21 - 170955103 -------ACTAAGTGATCACTATAG--------------------GTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     311439 21 +   1495729 -------ACTAAGTGATCACTATAG--------------------GTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     409316 21 -    863181 -------ACTAAGTGATCACTATAG--------------------GTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29561401 21 -  71996105 -------ACTAAGTGATCACTATAG--------------------GTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     245212 21 -    735854 -------ACTAAGTGATCACTATAG--------------------GTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     199539 21 -   1829203 -------ACTAAGTGATCACTATAG--------------------ATA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30371029 32 + 171630274 TAATACCACTAAGTGATCACTACAGGTG----------------GATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           195297 32 +    515838 TAATACCACTAAGTGATCACTACAGGTG----------------GATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     827439 32 -   1771730 TAATATCACTAAGTGATCACTATAGGTA----------------GATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     313243 32 -    383796 TAATACCACTAAGTGATCACTATAGGTG----------------GATA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           242371 28 +  18854210 -GAATCCAGCATATGCTTACTACAGG-------------------GAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26288296 48 +  26524999 GTTTACCAGTATATGCTGAACACATTGGACATTTTGAAAATTGTATTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            18032 28 -     22419 GGATACCGGCACAT----ACTACAGGTG----------------AACA
i dasNov3.JH569887         C 0 I 1020
e micMur3.chr6               291596 518 + 123392446 I
e mm10.chr17               58033150 2259 -  94987271 I
e proCoq1.NW_012149775v1      95892 192 -   1411461 I

a score=244522.000000
s hg38.chr6_GL000254v2_alt  1409322 21 +   4827813 TTTTATTAGTATTGAGATAAA
s panTro5.chr6             30282585 21 + 175400573 TTTTATTAGTACTGAGATAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30513281 21 + 173848474 TTTTATTAGTATTGAGATAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     220169 21 +   2037526 TTTTATTAGTATTGAGATAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74893188 21 + 122973662 TTTTATTAGTATTGAGATAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30767014 21 + 172585720 TTTTATTACTATTGAGATAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30062150 21 - 170955103 TTTTATTACTATTGAGATAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     311460 21 +   1495729 TTTTATTACTATTGAGATAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     409337 21 -    863181 TTTTATTACTATTGAGATAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29561422 21 -  71996105 TTTTATTACTATTGAGATAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     245233 21 -    735854 TTTTATTACTATTGAGATAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     199560 21 -   1829203 TTTTATTACTATTGAGATAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30371061 18 + 171630274 TTTTATTAC---TGAGATAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           195329 21 +    515838 TTTTATTACTATTGAGATAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     827471 21 -   1771730 TTTTGTTACTATTGAGataaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     313275 21 -    383796 TTTTATTACTATTGAGATAAA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           242399 21 +  18854210 ACTTATTACTCTTGAGATTAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26288344 21 +  26524999 TTTTATTGCTGTTGACATAAA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               291596 518 + 123392446 I
e mm10.chr17               58033150 2259 -  94987271 I
e dasNov3.JH569887            18060 1020 -     22419 I
e proCoq1.NW_012149775v1      95892 192 -   1411461 I

a score=404078.000000
s hg38.chr6_GL000254v2_alt  1409343 36 +   4827813 TACAATACAcagttgacccttgaacaacacaggttt
s panTro5.chr6             30282606 36 + 175400573 TACAATACAcagttgacccttgaacaacacaggttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30513302 36 + 173848474 TACAATACAcagttgacccttgaacaacacaggttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     220190 36 +   2037526 TACAATACAcagttgacccttgaacaacacaggttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74893209 36 + 122973662 TACAATATAcagttgacccttgaacaacacaggttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30767035 36 + 172585720 TACAATATAcagttgacccttgaacaccacaggttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30062171 36 - 170955103 TACAATATAcagttgacccttgaacaccacaggttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     311481 36 +   1495729 TACAATATAcagttgacccttgaacaccacaggttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     409358 36 -    863181 TACAATATAcagttgacccttgaacaccacaggttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29561443 36 -  71996105 TACAATATAcagttgacccttgaacaacacaggttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     245254 36 -    735854 TACAATATAcagttgacccttgaacaccacaggttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     199581 36 -   1829203 TACAATATAcagttgacccttcaacaacacaggttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30371079 36 + 171630274 TACAATATAcagttgactcttgaacaacacgggttt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           195350 35 +    515838 TACAATATAcagttgactcttgaacaacac-ggttt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     827492 36 -   1771730 tacaatatacagttgactcttgaacaacacgggttt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     313296 36 -    383796 TACAATATAcagttgactcttgaacaacacaggttt
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           242420 36 +  18854210 TATAATAAACAGTTGAACCTTGAACAGCATGGGATT
i otoGar3.GL873550         C 0 I 265
e micMur3.chr6               291596 518 + 123392446 I
e mm10.chr17               58033150 2259 -  94987271 I
e dasNov3.JH569887            18060 1020 -     22419 I
e proCoq1.NW_012149775v1      95892 192 -   1411461 I
e canFam3.chr35            26288365  0 +  26524999 C

a score=1130454.000000
s hg38.chr6_GL000254v2_alt  1409379 113 +   4827813 gaactgcttgagtctacatatatgtggattttcttctacttctgagacccataagatagcagcacatttaagccctccttttcctcctcctgagcctactcaacatgaaaatg
s panTro5.chr6             30282642 113 + 175400573 gaactgcttgagtctacatatatgtggattttcttctacttctgagacccataagatagcagcacatttaagccctccttttcctcctcctgagcctactcaacatgaaaatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30513338 113 + 173848474 gaactgcttgagtctacatatatgtggattttcttctacttctgagacccataagatagcagcacatttaagccctccttttcctcctcctgagcctactcaacatgaaaatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     220226 113 +   2037526 gaactgcttgagtctacatatatgtggattttcttctacttctgagacccataagatagcagcacatttaagccctccttttcctcctcctgagcctactcaacatgaaaatg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74893245 111 + 122973662 gaactgcttgag--tacctatatgtggattttcttcgacttccaagacccataagatagcagcacatttaagccctccttttcctcctcctgagcgtactcaacatgaaaatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30767071 113 + 172585720 gaactgcttgattctacatatatgtggattttcttccacttctgatacccataagatagcagcacatttaagccttccttttcctcttcctgagcctactcaacataaaaatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30062207 113 - 170955103 gaactgcttgattctacatatatgtggattttcttccacttctgatacccataagatagcagcacatttaagccctccttttcctcttcctgagcctactcaacataaaaatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     311517 113 +   1495729 gaactgcttgattctacatatatgtggattttcttccacttctgatacccataagatagcagcacatttaagccctccttttcctcttcctgagcctactcaacataaaaatg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     409394 113 -    863181 gaactgcttgattctacatatatgtggagtttcttccacttctgataccgataagatagcagcacatttaagccctccttttcctcttcctgagcctactcaacataaaaatg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29561479 113 -  71996105 gaactgcttgattctacatatatgtggattttcttccacttctgatacccataagatagcagcacatttaagccctccttttcctcttcctgagcctactcaacataaaaatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     245290 113 -    735854 gaactgcttgattctacatatatgtggattttcttccacttctgatacccataagatagcagcacatttaagccctccttttcctcttcctgagcctactcaacataaaaatg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     199617 113 -   1829203 gaactgcttgattctacatatatgtggattttcttccacttctgatacccataagatagcagcacatttaagccctccttttcctcttcctgagcctactcaacataaaaatg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30371115 111 + 171630274 gaactacttgagtctact--tatgtggattttcttccacctctgatacccgtaagatagcatcacatttaagccctccttttcctcctcctcagcctactcgacatgaaaatg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           195385 111 +    515838 gaactgctttagtctact--tatgtggattttcttccacctctgatacccgtaagatagcagcacatttaagccctccttttcctcctcctcagcctactcaacatgaaaatg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     827528 111 -   1771730 gaactacttgagtctact--tatgtggattttcttccacctctgatacccataagatagcagcacatttaagccctccttttcctcctcctcagcctactcaacatgaaaatg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     313332 111 -    383796 gaactgcttgagtctact--tgtgtggattttcttccacctctgatacccataagatagcagcacatttaagccctccttttcctcttcctcagcctactcaacatgaaaatg
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               291596 518 + 123392446 I
e mm10.chr17               58033150 2259 -  94987271 I
e dasNov3.JH569887            18060 1020 -     22419 I
e proCoq1.NW_012149775v1      95892 192 -   1411461 I
e canFam3.chr35            26288365   0 +  26524999 C
e otoGar3.GL873550           242456 265 +  18854210 I

a score=494122.000000
s hg38.chr6_GL000254v2_alt  1409492 44 +   4827813 tgatccacttctacttaatgaatagtaaatatattttcttttcc
s panTro5.chr6             30282755 44 + 175400573 tgatccacttctacttaatgaatagtaaatatattttcttttcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30513451 44 + 173848474 tgatccacttctacttaatgaatagtaaatatattttcttttcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     220339 44 +   2037526 tgatccacttctacttaatgaatagtaaatatattttcttttcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74893356 44 + 122973662 tgatccacttctacttaatgaatagtaaatatattttcttttcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30767184 44 + 172585720 tgatcaacttctacttcatgaagagtaaatatattttcttttcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30062320 44 - 170955103 tgatcaacttctacttaatgaagagtaaatatattttcttttcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     311630 44 +   1495729 tgatcaacttctacttaatgaagagtaaatatattttcttttcc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     409507 44 -    863181 tgatcaacttctacttaatgaagagtaaatatattttcttttcc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29561592 44 -  71996105 tgatcaacttctacttaatgaagagtaaatatattttcttttcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     245403 44 -    735854 tgatcaacttctacttaatgaagagtaaatatattttcttttcc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     199730 44 -   1829203 tgatcaacttctacttaatgaagagtaaatatattttcttttcc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30371226 44 + 171630274 tgatccacttctacttagtgaatagtaaatatattttcttttcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           195496 44 +    515838 tgatccactgctacttagtgaatagtaaatatattttcctttcc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     827639 44 -   1771730 tgatccacttctacttagtgaatagtaaatatattttcttttcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     313443 44 -    383796 tgatccacttctacttagtgaatagtaaatatattttcttttcc
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      96084 42 -   1411461 tgatctacttccacttaatgaatagtaaatatatttttttcc--
i proCoq1.NW_012149775v1   I 192 C 0
e micMur3.chr6               291596 518 + 123392446 I
e mm10.chr17               58033150 2259 -  94987271 I
e dasNov3.JH569887            18060 1020 -     22419 I
e canFam3.chr35            26288365  0 +  26524999 C
e otoGar3.GL873550           242456 265 +  18854210 I

a score=2283677.000000
s hg38.chr6_GL000254v2_alt  1409536 222 +   4827813 ttatgattttcttaataa-----tgttttctctagcttacttgattgtaagattatatgtattataagtatataatacat-----atacaaaatatgtgttaatcaacggtttatgttattggtaaggcatctggtcaacagta--------------aagttttgggggagtc--aaaagttatatatgga-tttttggctgt-tcagagggtcagcacccctta-cccccatgttgttcaaggatgaat
s panTro5.chr6             30282799 223 + 175400573 ttatgattttcttaataa-----tgttttctctagcttacttgattgtaagattatatgtattataagtatataatacat-----atacaaaat--gtgttaatcaacggtttatgttattggtaaggcatctggtcaacagta-----------gttaagttttgggggagtc--aaaagttatatatgga-tttttggctgt-tcagagggtcagcacccctta-cccctatgttgttcaaggatgaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30513495 223 + 173848474 ttatgattttcttaataa-----tgttttctctagcttacttgattgtaagattatatgtattataagtatataatacat-----atacaaaat--gtgttaatcaacggtttatgttattggtaaggcatctggtcaacagta-----------gttaagttttgggggagtc--aaaagttatatatgga-tttttggctgt-tcagagggtcagcacccctta-cccccatgttgttcaaggatgaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     220383 225 +   2037526 ttatgattttcttaataa-----tgttttctctagcttacttgattgtaagattatatgtattataagtatataatacat-----atacaaaatatgtgttaatcaacggtttatgttattggtaaggcatctggtcaacagta-----------gttaagttttgggggagtc--aaaagttatatatgga-tttttggctgt-tcagagggtcagcacccctta-cccccatgttgttcaaggatgaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74893400 219 + 122973662 ttatgattttcttaataa-----tg--ttctctagcttacttgattctaagattgc----------agtatataatacatataacatacaaaatatgtgttaatcaacggtttatgttattggtaaggcatctggtcaacagta-----------gttaagttttgggggagtc--aaaagttatatatagattttttggctgt-tcagagggtcagcacccctta-cccccatgttgttcaaggatgaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30767228 217 + 172585720 ttatgattttct---taa-----tgttttctctagctcacttgattgtaagattgc----------agtatataatacatataacatacaaaatatgtgttaatcaactgtttatgttattggtaaggcatctggtcaatagta-----------gttaagttttgggggagtc--aaaaggtatatatgga-cttttggttgt-tcagagggtcagcacccctta-cccccatgttgttcaaggatcaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30062364 217 - 170955103 ttatgattttct---taa-----tgttttctctagctcacttgattgtaagtttgc----------agtatataatacatataacatacaaaatatgtgttaatcaactgtttatgttattggtaaggcatctggtcaatagta-----------gttaagttttgggggagtc--aaaaggtatatatgga-cttttggttgt-tcagagggtcagcacccctta-cccccatgttgttcaaggatcaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     311674 217 +   1495729 ttatgattttct---taa-----tgttttctctagctcacttgattgtaagtttgc----------agtatataatacatataacatataaaatatgtgttaatcaactgtttatgttattggtaaggcatctggtcaatagta-----------gttaagttttgggggagtc--aaaaggtatatatgga-cttttggttgt-tcagagggtcagcacccctta-cccccatgttgttcaaggatcaat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     409551 219 -    863181 ttatgattttct---taa-----tgttttctctagcttacttgattgtaagattgc----------agtatataatacatataacatacaaaatatgtgttaatcaactgtttatgttattggtaaggcatctggtcaatagta-----------gttaagttttgggggagtcaaaaaagttatatatgga-cttttggctgt-tcagagggtcagcacccctta-cccccatgttgttcaaggatcaat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29561636 219 -  71996105 ttatgattttct---taa-----tgttttctctagcttacttgattgtaagattgc----------agtatataatacatataacatacaaaatatgtgttaattaactgtttatgttattggtaaggcatctggtcaatagta-----------gttaagttttgggggagtcaaaaaagttatatatgga-cttttggctgt-tcagagggtcagcacccctta-cccccatgttgttcaaggatcaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     245447 219 -    735854 ttatgattttct---taa-----tgttttctctagcttacttgattgtaagattgc----------agtatataatacatataacatacaaaatatgtgttaatcaactgtttatgttattggtaaggcatctggtcaatagta-----------gttaagttttgggggagtcaaaaaagttatatatgga-cttttggctgt-tcagagggtcagcacccctta-cccccatgttgttcaaggatcaat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     199774 217 -   1829203 ttatgattttct---taa-----tgttttctctagcttacttgattgtaagattgc----------agtatataatacatataacatacaaaatatgtgttaatcaactgttgatgttattggtaaggcatctggtcaatagta-----------gttaagttttgggggagtc--aaaagttatatatgga-cttttggctgt-tcagagggtcagcacccctta-cccccatgttgttcaaggatcaat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30371270 208 + 171630274 ttatgattttct---taa-----tgttttctctagcttacttggctgtaagattgc----------agtatataatgc-t-----atacaaaac--gtgttaatcaactgtttatgttattggtaaggcatccagtcaacagta-----------gttaagttttgggggagtc---aaagttatatatgga-ttttcagctgt-tcaaatggtgagcacccctta-tccccacattgttcaaggatcgac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           195540 213 +    515838 ttatgattttcttaataa-----tgttttctctagcctacttggttgtaagattgc----------agtacataatgcat-----atacaaaac--gtgttaatcaactgtttatgttattggtaaggcatccagtcaacagta-----------gttaagttttgggcaagtc---aaagttatatatgga-ttttcagctgt-tcaaacggtgagcaccccttattccccacgttgttcaaggatcaac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     827683 211 -   1771730 ttatgattttcttaataa-----tgttttctctagcttacttggctgtaagattgc----------agtatataatgc-t-----atacaaaac--atgttaatcaactgtttatgttattggtaaggcatccagtcaacagta-----------gttaagttttgggggagtc---aaagttatatacgga-ttttcagctgt-tcaaacggtgagcacccctta-tccccacgttgttcaaggatcaac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     313487 209 -    383796 ttatgattttcttaataa-----tgttttctctagcttacttggttgtaagattgc----------agtatataatacat-----atacaaaac--gtgttaatcaactgtttatgttattgctaaggcatccagtcaacagta--------------aagttttgggggagtc---aaagttttatatgga-ttttcagctgt-tcaatcggtgagcacccctta-tccccacgttgttcaaggatcaac
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      96126 235 -   1411461 ttataattttcttaataacattgtcttttctctagctcactttattgtaagaatac----------agtatacaatgcat--aatatacaaaatacatgttaatcaactagttatgttattggtaaagcttctggtcaatagtaggctattagtagttaagttttaggggagtc--caaacttatacatgga-tttttgattgtgccagggggtcagcacccctaa-cccctgtgtcgttcaagggttcat
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           242721 222 +  18854210 ttatgattttcttaataacattatcttttctctggctt---------taagaatat----------agtatat-atacat--aatatataaaatatatgttaattgact--ttctgttattggtgaagcttctggtcaacactagaccattgatagttaaa-tttgcaggagtc--cagagttatacacaga-tttttgactgtgctgagcagttggtgtacctaa-cccctacgttgttcaaaagtcaac
i otoGar3.GL873550         I 265 C 0
e micMur3.chr6               291596 518 + 123392446 I
e mm10.chr17               58033150 2259 -  94987271 I
e dasNov3.JH569887            18060 1020 -     22419 I
e canFam3.chr35            26288365   0 +  26524999 C

a score=349964.000000
s hg38.chr6_GL000254v2_alt  1409758 33 +   4827813 tgT-ATATCTATTATAATAGATTCTTATATAGAA
s panTro5.chr6             30283022 33 + 175400573 tgT-ATATCTATTATAATAGATTCTTATATAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30513718 33 + 173848474 tgT-ATATCTATTATAATAGATTCTTATATAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     220608 33 +   2037526 tgT-ATATCTATTATAATAGATTCTTATATAGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74893619 33 + 122973662 tgT-ATATCTATTAAAACAGATTCCTATatagaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30767445 33 + 172585720 tgT-ATATCTATTATAATAGATTCTTACATagaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30062581 33 - 170955103 tgT-ATATCTATTATAATAGATTCTTACATAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     311891 33 +   1495729 tgT-ATATCTATTATAATAGATTCTTACATagaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     409770 33 -    863181 tgT-ATACCTATTATAATAGATTCTTACATAGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29561855 33 -  71996105 tgT-GTATCTATTATAATAGATTCTTACATAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     245666 33 -    735854 tgT-ATATCTATTATAATAGATTCTTACATAGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     199991 33 -   1829203 tgT-ATATCTATTATAATAGATTCTTACATAGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30371478 29 + 171630274 tgT-A----TATTATAATAGATTCCTATATAGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           195753 29 +    515838 tgT-A----TATTATAATAGATTCTTATATAGTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     827894 24 -   1771730 tg----------tataatagattcttatatagta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     313696 33 -    383796 tgT-ATATCTATTATAATAGATTCTTATATAGTA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      96361 31 -   1411461 tgTAATGAT---TGTAATAGATTCTCATATACAA
i proCoq1.NW_012149775v1   C 0 I 4
s otoGar3.GL873550           242943 30 +  18854210 tgT-ATATC---CATAATAGATTCTCTTATAGAA
i otoGar3.GL873550         C 0 I 4
s canFam3.chr35            26288365 33 +  26524999 TGT-ATATTCATTGTGATAAATTCATATATGGAA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               291596 518 + 123392446 I
e mm10.chr17               58033150 2259 -  94987271 I
e dasNov3.JH569887            18060 1020 -     22419 I

a score=957694.000000
s hg38.chr6_GL000254v2_alt  1409791 78 +   4827813 AGA----AAGAAAAAAGT-AAAGTCACAAGGAATCCTACTCCACAGAGATAACCAAATTATACTGTATATCTGTGCTTGTGTA
s panTro5.chr6             30283055 78 + 175400573 AGA----AAGAAAAAAGT-AAAGTCACAAGGAATCCTACTCCACAGAGATAACCAAATTATACtgtatatctgtgcttgtgta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30513751 78 + 173848474 AGA----AAGAAAAAAGT-AAAGTCACAAGGAATCCTACTCCACAGAGATAACCAAATTATACTGTATATCTGTGCTTGTGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     220641 78 +   2037526 AGA----AAGAAAAAAGT-AAAGTCACAAGGAATCCTACTCCACAGAGATAACCAAATTATACTGTATATCTGTGCTTGTGTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74893652 78 + 122973662 aga----aagaaaaaagt-aaagtcacaaggaatcctactccacagagataaccaaattatactgtatatctgtgcttgtgta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30767478 82 + 172585720 agatagaaagaaaaaagt-aaagTCACAAGGAATCCTACTCGACAGAGATAAGCAAATTGTACTGTATATCTGTGCTTGTGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30062614 82 - 170955103 AGATAGAAAGAAAAAAGT-AAAGTCACAAGGAATCCTACTCGACAGAGATAACCAAATTGTACTGTATATCTGTGCTTGTGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     311924 82 +   1495729 agatagaaagaaaaaagt-aaagTCACAAGGAATCCTACTCGACAGAGATAACCAAATTGTACTGTATATCTGTGCTTGTGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     409803 82 -    863181 AGATAGAAAGAAAAAAGT-AAAGTCACAAGGAATCCTACTCCACAGAGATAAGCAAATGGTACTGTATATCTGTGCTTGTGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29561888 82 -  71996105 AGATAGAAAGAAAAAAGT-AAAGTCACAAGGAATCCTACTCCACAGAGATAACCAAATTCTACTGTATATCTGTGCTTGTGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     245699 82 -    735854 AGATAGAAAGAAAAAACT-AAAGTCACAAGGAATCCTACTCCACAGAGATAACCAAATTGTATTGTGTATCTGTGCTTGTGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     200024 63 -   1829203 AGA--------------T-AAAGTCAC---GAATCCTACTCCACGGAGATAACCAAATTGTACTGTATATCTGTGCTTGTG--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30371507 78 + 171630274 ACA----TAGAAAAAAGT-AAAGTCACAAGGAATCCTACTCCACAGAGATAACCAAATTATACGGTGTATCTGTGCTTGTGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           195782 77 +    515838 AGA----TAG-AAAAAGT-AAAGTCACAAGGAATCCTACTCCACAGAGATAACCAAATTATACGGTGTATCTGTGCTTGTGTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     827918 78 -   1771730 aga----tagaaAAAAGT-AAAGTCACAAGCAATCCTACTCCACAGAGATAACCAAATTATACAGTGTATCTGTGCTTATACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     313729 78 -    383796 AGA----TAGAAAAAAGT-AAAGTCACAAGGAATCCTACTCCACAGAGATAACCAAATTATACAGTATATCTGTGCTTGTGTA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               292114 79 + 123392446 AGA----AATAAAAAAGTAAAAGTCACAAGGAATACCATTCTGCTGAGACAACCAAATTATACTATATATTTGTGCTTGTGTA
i micMur3.chr6             I 518 C 0
s proCoq1.NW_012149775v1      96396 79 -   1411461 AGA----AATAAAAAAGTAAAAGTCACAAGGAATACCACTCCATTGAGACAACCAAATTATACTGTATATTTGTGCTTGTGTA
i proCoq1.NW_012149775v1   I 4 I 585
s otoGar3.GL873550           242977 79 +  18854210 AGA----CAGAAAAAAGTAAAAGTCACAAGGAATTCCATGCTACAGGGATCACTAAATTATACTGTGTATCTATACTTAAGTG
i otoGar3.GL873550         I 4 C 0
s canFam3.chr35            26288398 61 +  26524999 AGG----TAGAGTAA----AAAATGACAAGGAATCCTACTTCAGAGAGA-----------TACTTTTTTTTTTTTTTTTA---
i canFam3.chr35            C 0 C 0
e mm10.chr17               58033150 2259 -  94987271 I
e dasNov3.JH569887            18060 1020 -     22419 I

a score=5643.000000
s hg38.chr6_GL000254v2_alt  1409869 1 +   4827813 -T
s panTro5.chr6             30283133 1 + 175400573 -t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30513829 1 + 173848474 -T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     220719 1 +   2037526 -T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74893730 1 + 122973662 -t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30767560 1 + 172585720 -T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30062696 1 - 170955103 -T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     312006 1 +   1495729 -T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     409885 1 -    863181 -T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29561970 1 -  71996105 -T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     245781 1 -    735854 -T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     200087 1 -   1829203 -T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30371585 1 + 171630274 -T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           195859 1 +    515838 -T
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     827996 1 -   1771730 -T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     313807 1 -    383796 -T
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               292193 1 + 123392446 -T
i micMur3.chr6             C 0 I 708
s otoGar3.GL873550           243056 1 +  18854210 -T
i otoGar3.GL873550         C 0 I 6
s canFam3.chr35            26288459 1 +  26524999 A-
i canFam3.chr35            C 0 C 0
e mm10.chr17               58033150 2259 -  94987271 I
e dasNov3.JH569887            18060 1020 -     22419 I
e proCoq1.NW_012149775v1      96475 585 -   1411461 I

a score=133260.000000
s hg38.chr6_GL000254v2_alt  1409870 12 +   4827813 ATGTATGTGGCT
s panTro5.chr6             30283134 12 + 175400573 atgtgtgtggct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30513830 12 + 173848474 ATGTATGTGGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     220720 12 +   2037526 ATGTATGTGGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74893731 12 + 122973662 atgtatgtggct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30767561 12 + 172585720 ATATATGTGGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30062697 12 - 170955103 ATATATGTGGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     312007 12 +   1495729 ATATATGTGGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     409886 12 -    863181 ATATATGTGGCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29561971 12 -  71996105 ATATATGTGGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     245782 12 -    735854 ATATATGTGGCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     200088 12 -   1829203 ATATATGTGGCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30371586 12 + 171630274 ATGTATGTGGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           195860 12 +    515838 ATATATGTGGCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     827997 12 -   1771730 ATATATGTGGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     313808 12 -    383796 ATATATGTGGCT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           243063 12 +  18854210 GCATGTTTGGtt
i otoGar3.GL873550         I 6 I 872
s canFam3.chr35            26288460 12 +  26524999 ATGGGCTTTACT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               292194 708 + 123392446 I
e mm10.chr17               58033150 2259 -  94987271 I
e dasNov3.JH569887            18060 1020 -     22419 I
e proCoq1.NW_012149775v1      96475 585 -   1411461 I

a score=490220.000000
s hg38.chr6_GL000254v2_alt  1409882 52 +   4827813 CTGTATATGTGTGTTGCTATATATGTGTTTG-GTTTTTTT-AATGG-----ACTAGACA
s panTro5.chr6             30283146 52 + 175400573 ctgtatatgtgtgttgctatatatgtgtttg-GTTTTTTT-AATGG-----ACTAGACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30513842 52 + 173848474 CTGTATATGTGTGTTGCTATATATGTGTTTG-GTTTTTTT-AATGG-----ACTAGACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     220732 52 +   2037526 CTGTATATGTGTGTTGCTATATATGTGTTTG-GTTTTTTT-AATGG-----ACTAGACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74893743 58 + 122973662 ctgtatatgtgtattgctatatatgggtttgttttttttt-aatggactatactagaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30767573 58 + 172585720 CTGTATATGTGTGTTGCTATACATGCGTTTG-GTTTTTTTTAATGGACTATACTAGACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30062709 58 - 170955103 CTGTATATGTGTGTTGCTATACATGCGTTTG-GTTTTTTTTAATGGACTATACTAGACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     312019 58 +   1495729 CTGTATATGTGTGTTGCTATACATGCGTTTG-GTTTTTTTTAATGGACTATACTAGACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     409898 58 -    863181 CTGTATATGTGTGTTGCTATATATGCGTTTG-GTTTTTTTAAATGGACTATACTAGACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29561983 58 -  71996105 CTGTATATGTGTGTTGCTATATATGCGTTTG-GTTTTTTTTAATGGACTATACTAGACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     245794 58 -    735854 CTGTATATGTGTGTTGCTATACATGCGTTTG-GTTTTTTTTAATGGACTATACTAGACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     200100 58 -   1829203 CTGTATATGTGTGTTGCTATATATGCGTTTG-GTTTTTTTTAATGGACTATACTAGACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30371598 56 + 171630274 CTATATATGTGTGGTGC--TATATGTGTTTG-GTTTTTCTTAATGGACTATACTAGATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           195872 58 +    515838 CTATGTATGTGTGGTGCTATATATGTGTTTG-GTTTTTCTTAATGGACTATACTAGATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     828009 58 -   1771730 CTATATATGTGTGGTGCTATATATGTGTTTG-GTTTTTCTTAATGGACTATACTAGATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     313820 58 -    383796 CTATATATGTGTGGTGCTATATATGTGTTTG-GTTTTTCTTAATGGACTATACTAGGTA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           243947 43 +  18854210 cTATATAGGGGTG--------TGTGTGTGTG-------TTTAATGTAC-ATACTAGACA
i otoGar3.GL873550         I 872 C 0
s canFam3.chr35            26288472 31 +  26524999 ACGAATACAAGT-----------TGTATCTT-GCTTTTTATCA----------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               292194 708 + 123392446 I
e mm10.chr17               58033150 2259 -  94987271 I
e dasNov3.JH569887            18060 1020 -     22419 I
e proCoq1.NW_012149775v1      96475 585 -   1411461 I

a score=204066.000000
s hg38.chr6_GL000254v2_alt  1409934 20 +   4827813 TGCTGAACTATATCTTGCTT
s panTro5.chr6             30283198 20 + 175400573 TGCTGAACTATATCTTGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30513894 20 + 173848474 TGCTGAACTATATCTTGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     220784 20 +   2037526 TGCTGAACTATATCTTGCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74893801 20 + 122973662 tgctgaactatatcttgctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30767631 20 + 172585720 TGCTGAACTATATCTTGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30062767 20 - 170955103 TGCTGAACTATATCTTGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     312077 20 +   1495729 TGCTGAACTATATCTTGCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     409956 20 -    863181 TGCTGAACTATATCTTGCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29562041 20 -  71996105 TGCTGAACTGTATCTTGCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     245852 20 -    735854 TGCTGAACTATATCTTGCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     200158 20 -   1829203 TGCTGAACTATATCTTGCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30371654 18 + 171630274 TGCTGAACTG--TCTTGCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           195930 18 +    515838 TGCTGAACTG--TCTTGCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     828067 18 -   1771730 TGCTAAACTG--TCTTGCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     313878 18 -    383796 TTCTGAACTG--TCTTGCTG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               292902 20 + 123392446 TGCTGAATTGTATCTTGCTT
i micMur3.chr6             I 708 C 0
s otoGar3.GL873550           243990 19 +  18854210 TGCTGAATTGTATATTTC-T
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26288503 18 +  26524999 CATTGAACGAAATTTTGT--
i canFam3.chr35            C 0 C 0
e mm10.chr17               58033150 2259 -  94987271 I
e dasNov3.JH569887            18060 1020 -     22419 I
e proCoq1.NW_012149775v1      96475 585 -   1411461 I

a score=565713.000000
s hg38.chr6_GL000254v2_alt  1409954 43 +   4827813 TTTTCTGTTTGA--ACTAAAAACTTTCAAGGGGAACAAATG-------------------------------CATA
s panTro5.chr6             30283218 43 + 175400573 TTTTCTGTTTGA--ACTAAAAACTTTCAAGGGGAACAAATG-------------------------------CATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30513914 43 + 173848474 TTTTCTGTTTGA--ACTAAAAACTTTCAAGGGGAACAAATG-------------------------------CATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     220804 43 +   2037526 TTTTCTGTTTGA--ACTAAAAACTTTCAAGGGGAACAAATG-------------------------------CATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74893821 43 + 122973662 ttttcTGTTTGA--ACCAAAAACTTTCAAGGGGAACAAATG-------------------------------CATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30767651 43 + 172585720 TTTTCTGTTTGA--ACCAAAAACTTTCAAGAGGAACAAATA-------------------------------CATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30062787 43 - 170955103 TTTTCTGTTTGA--ACCAAAAACTTTCAAGAGGAACAAATA-------------------------------CATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     312097 43 +   1495729 TTTTCTGTTTGA--ACCAAAAACTTTCAAGAGGAACAAATA-------------------------------CATA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     409976 43 -    863181 TTTTCTGTTTGA--ACCAAAAACTTTCAAGAGGAACAAATA-------------------------------CATA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29562061 43 -  71996105 TTTTCTGTTTGA--ACCAAAAACTTTCAAGAGGAACAAATA-------------------------------CATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     245872 43 -    735854 TTTTCTGTTTGA--ACCAAAAACTTTCAAGAGGAACAAATA-------------------------------CATA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     200178 43 -   1829203 TTTTCTGTTTGA--ACCAAAAACTTTCAAGAGGAACAAATA-------------------------------CATA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30371672 43 + 171630274 TTTTCTGTTTGG--ACCAAAAACTTTCAAGGGGAACAAATA-------------------------------CATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           195948 43 +    515838 TTTTCTGTTTGG--ACCAAAAACTTTCAAGGGGAGCAAATA-------------------------------CATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     828085 43 -   1771730 TTTTCTGTTTGG--ACCAAAAACTTTCAAGGGGAACAAATA-------------------------------CATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     313896 43 -    383796 TTTTCTGTTTGG--ACCAAAAACTTTTAAGGGGAACAAATA-------------------------------CATA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               292922 43 + 123392446 TTTTCAGTTTGA--ACCAAAAACTTTCAAGGGAAACAAATA-------------------------------CATA
i micMur3.chr6             C 0 I 151
s otoGar3.GL873550           244009 40 +  18854210 TTTTCGGTTTGA--ACCAAAAACTTTCAAGAGAAACAAATA-------------------------------A---
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26288521 29 +  26524999 -----AGTCCGGCCACAATAAACATTCAA-----------A-------------------------------CTTA
i canFam3.chr35            C 0 I 7
s dasNov3.JH569887            19080 74 -     22419 TTCTCAGTTTGA--ACCAAAAATTTATAAGGGAAGCAAGTAGTCCAGGAAAAAAAAACACTAAAATTTTAGTCTTA
i dasNov3.JH569887         I 1020 C 0
e mm10.chr17               58033150 2259 -  94987271 I
e proCoq1.NW_012149775v1      96475 585 -   1411461 I

a score=1121545.000000
s hg38.chr6_GL000254v2_alt  1409997 106 +   4827813 CTCAGG----------------------------------TCCCGCATTCCTTGGCTCAAATAGTGATCAAGGGGTTACTGtaataattatcatataattgtgtggccc--ttt----atatatattcagagctctcaaacatagc
s panTro5.chr6             30283261 106 + 175400573 CTCAGG----------------------------------TCCCGCATTCCTTGGCTCAAATAGTGATCAAGGGGTTACTGtaataattatcatataattgtgtggccc--ttt----atatatattcagagctctcaaacatagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30513957 106 + 173848474 CTCAGG----------------------------------TCCCGCATTCCTTGGCTCAAATAGTGATCAAGGGGTTACTGtaataattatcatataattgtgtggccc--ttt----atatatattcagagctctcaaacatagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     220847 106 +   2037526 CTCAGG----------------------------------TCCCGCATTCCTTGGCTCAAATAGTGATCAAGGGGTTACTGtaataattaccatataattgtgtggccc--ttt----atatatattcagagctctcaaacatagc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74893864 106 + 122973662 CCCAGG----------------------------------TCCCGCATTCCTTGGCTTAAATAGTGATCAAGGGGTTACTGtaataattatcatataattgtgtggccc--ttt----atatatattcagagctctcaaacatagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30767694 110 + 172585720 CTCAGG----------------------------------TCCTGCATTCCTTGGCTTAAATCGTGATCAAGGGGTTACTGTAGTAATTACCATATAATTGTGTGGCCC--TTCATATATATATATTCagagctctcaaacatagc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30062830 110 - 170955103 CTCAGG----------------------------------TCCTGCATTCCTTGGCTTAAATCGTGATCAAGGGGTTACTGtagtaattaccatataattgtgtggccc--ttcatatatatatattcagagctctcaaacatagc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     312140 110 +   1495729 CTCAGG----------------------------------TCCTGCATTCCTTGGCTTAAATCGTGATCAAGGGGTTACTGTAGTAATCACCATATAATTGTGTGGCCC--TTCATATATATATATTCagagctctcaaacatagc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     410019 108 -    863181 CTCAGG----------------------------------TCCTGCATTCCTTGGCTTAAATTGTGATCAAGGGGTTACTGtagtaattaccatataattgtgaggccc--ttc--atatacttattcagagctctcaaacgtagc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29562104 108 -  71996105 CTCAGG----------------------------------TCCTGCATTCCTTGGCTTAAATCGTGATCAAGGGGTTACTGtagtaattaccatataattgtgtggccc--ttc--atatatatattcagagctctcaaacatagc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     245915 108 -    735854 CTCAGG----------------------------------TCCTGCATTCCTTGGCTTAAATTGTGATCAAGGGGTTACTGtagtaattaccatataattgtgtggccc--ttc--atatacttattcagagctctcaaacgtagc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     200221 108 -   1829203 CTCAGG----------------------------------TCCTGCATTCCTTGGCTTAAATCGTGATCAAGGGGTTACTGTAGTAATTATCAtataattgtgtggccc--ttc--atatatatattcagggctctcaaacatagc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30371715 103 + 171630274 CTCAGG----------------------------------TTCTGCATTCTTGGGCTTAAATGGCGATCGAAGGGTT-Cagtaataattatcacataattgtatggccc--ttt----atatatattcagagctctcaaac--agc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           195991 108 +    515838 CTCAGG----------------------------------TTCTGCATTGTTGGGCTTAAATGGCGACCAAGGGGTTACagtaataattatcacataattgtgtggcccttttt----ttatatattcagagctctcaaacatagc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     828128 106 -   1771730 CTCAGG----------------------------------TTCTGCATTCTTGGGCTTAAATGGCGACCAAGGGGTTACagtaataattaccacataattgtgtggccc--ttt----atatatattcagagctctcaaacatagt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     313939 106 -    383796 CTCAGG----------------------------------TTCTGCATTCTTGGGCTTAAATGGCAACCAAGGGGTTACagtaataattatcacataatcgtgtggccc--ttt----atatatattcagagctctcaaacatagc
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           244049 133 +  18854210 TTCAGACACAATATAAAATCTTGATTCTGGGAACTGGTATTCCCGAATTCCTTGGCTTAAATGATGATCATGGGGTTATTG-----ATTATcttctaattgtgtagttc--ttt------atatattcagaactctcaaacatata
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26288557  69 +  26524999 GTCAAT----------------------------------TTTTGCATTCCTTGGCTTGCAC-----------------------------------ACTGCCCGGTCC--TTT------GTGTGTTCTGAGCTCTGAGACTTTCC
i canFam3.chr35            I 7 I 1
s dasNov3.JH569887            19154  96 -     22419 GTCAGT----------------------------------ATTGCCATTACTTGGCTTAAATGGTGACCCAGGGGTGGGAATA-----TATCTTGTAACTGTGTAGCCA--TTA---------TATTCGGAACTCTCAAATACACC
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               292965 151 + 123392446 I
e mm10.chr17               58033150 2259 -  94987271 I
e proCoq1.NW_012149775v1      96475 585 -   1411461 I

a score=656572.000000
s hg38.chr6_GL000254v2_alt  1410103 52 +   4827813 -tatcttgtttga-ccccc----------acagcaacctggag-aatgggcagggcagtcttccc
s panTro5.chr6             30283367 53 + 175400573 -tatcttgtttga-ccccc---------cacagcaacctggag-aatgggcagggcagtcttccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30514063 53 + 173848474 -tatcttgtttga-ccccc---------cacagcaacctggag-aatgggcagggcagtcttccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     220953 52 +   2037526 -tattttgtttga-ccccc----------acagcaacctggag-aatgggcagggcagtcttccc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74893970 52 + 122973662 -tatcttgtttga-ccccc----------acagcaacctggag-aatgggcagggcagtcttccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30767804 52 + 172585720 -tatcttgtttga-ccccc----------acagcaacctggag-aatgggcagtgcagTCTTCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30062940 52 - 170955103 -tatcttgtttga-ccccc----------acagcaacctggag-aatgggcagtgcagtcttccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     312250 52 +   1495729 -tatcttgtttga-ccccc----------acagcaatctggag-aatgggcagtgcagTCTTCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     410127 52 -    863181 -tatcttgtttga-ccccc----------acagcaacctggag-aatgggcagtgcagtcttccc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29562212 53 -  71996105 -tatcttgtttgacccccc----------acagcaacctggag-aacgggcagtgcagtcttccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     246023 52 -    735854 -tatcttgtttga-ccccc----------acagcaacctggag-aatgggcagtgcagTCTTCCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     200329 52 -   1829203 -tatcttgtttga-ccccc----------acagcaacctggag-aatgggcagtagagtcttccc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30371818 46 + 171630274 -tatcttgtttga-----------------cagcaacctggaa-aatgggtagggtagTCTTTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           196099 46 +    515838 -tatcttgtgtga-----------------cagcaacctggag-aatgggcagggcaatctttcc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     828234 46 -   1771730 -tatcttgtttga-----------------cagcaacgtggag-aatgggcagggcagtctttcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     314045 46 -    383796 -tatcttgtttga-----------------cagcaacctggag-aatgggcagggcagTCTTTCC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               293116 52 + 123392446 -tatcttctttga-cctta----------acagcaacttgaag-aatgagcagagctgtcttccc
i micMur3.chr6             I 151 C 0
s proCoq1.NW_012149775v1      97060 52 -   1411461 -tatcttgtttga-ccctc----------acagcaacttgaag-aatgagcagagctgtcttccc
i proCoq1.NW_012149775v1   I 585 C 0
s otoGar3.GL873550           244183 47 +  18854210 -tatattgtttga-acccc----------acaacaaGTTGGAG-AATGAGAA-----GTCTTCCG
i otoGar3.GL873550         I 1 C 0
s canFam3.chr35            26288627 62 +  26524999 -TGAGGTGTCTGA-GCCCCGGGCGACGTAGTGGGAACTGATGG-GACGGGCAGGGCGGACTTCCC
i canFam3.chr35            I 1 I 629
s dasNov3.JH569887            19250 54 -     22419 CCATTCTGTTTTA-CTCCT----------GCTGTAACTTGGAGTGGTGGACAGAGCAGTCTTTCC
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58033150 2259 -  94987271 I

a score=5480120.000000
s hg38.chr6_GL000254v2_alt  1410155 417 +   4827813 cactgtacGTTTGAACTGTT-CTGGCAGTTGACTTTCCTGACACACTCCTGAAATCTGAAACAAACCTGTTCATGTTTCTACCCTACTTTAAGCCTTTCTCTGGCCCATAACAGTGATTGGATTAAGCTTAA-TTTCTTAGCAAAGCATAC-AGGTTCTTCCATATAACCACTGCCTACCTGTCAAGCTTCATCTGGCACTCCC-TCAGATCCAAGCGGTACAAAACTC--CATTTCCTGTAGTGCACACATCTACAACTTTTTAAGCTGCTCTTC---TAAAAAAACC-----TACTTGTCGGCCTTCCTGGTTCTTGTTTTACCACTTTCTTTTGCTCTC---TAAGAAACGTGCATATATTTTTAT----AAAAT-AGCCTATACTGTAATTTACGACCATTTCTCTGC-TTCATCCTACTCATCACCCCAGAGAGA-------
s panTro5.chr6             30283420 417 + 175400573 cactgtacGTTTGAACTGTT-CTGGCAGTTGACTTTCCTGACCCACTCCTGAAATCTGAAACAAACCTGTTCATGTTTCTACCCTACTTTAAGCCTTTCTCTGGCCCATAACAGTGATTGGATTCAGCTTAA-TTTCTTAGCAAAGCATAG-AGGTTCTTCCATATAACCACTGCCTACCTGTCAAGCTTCATCTGGCACTCCC-TCAGATCCAAGCGGTACAAAACTC--CATTTCCTGTAGTGCACACATCTACAACTTTTTAAGCTGCTCTTC---TAAAAAAACC-----TACTTGTCGGCCTTCCTGGTTCTTGTTTTACCACTTTCTTTTGCTCTC---TAAGAAACGTGCATATATTTTTAT----AAAAT-AGCCTATACTGTAATTTACGACCATTTCTCTGC-TTCATCCTACTCATCACCCCAGAGAGA-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30514116 417 + 173848474 cactgtacGTTTGAACTGTT-CTGGCAGTTGACTTTCCTGACCCACTCCTGAAATCTGAAACAAACCTGTTCATGTTTCTACCCTACTTTAAGCCTTTCTCTGGCCCATAACAGTGATTGGATTCAGCTTAA-TTTCTTAGCAAAGCATAG-AGGTTCTTCCATATAACCACTGCCTACCTGTCAAGCTTCATCTGGCACTCCC-TCAGATCCAAGCGGTACAAAACTC--CATTTCCTGTAGTGCACACATCTACAACTTTTTAAGCTGCTCTTC---TAAAAAAACC-----TACTTGTCGGCCTTCCTGGTTCTTGTTTTACCACTTTCTTTTGCTCTC---TAAGAAACGTGCATATATTTTTAT----AAAAT-AGCCTATACTGTAATTTACGACCATTTCTCTGC-TTCATCCTACTCATCACCCCAGAGAGA-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     221005 416 +   2037526 cactgtacGTTTGAACTGTT-CTGGCAGTTGA-TTTCCTGACCCACTCCTGAAATCTGAAACAAACCTGTTCATGTTTCTACCCTACTTTAAGCCTTTCTCTGGCCCATAACAGTGATTGGATTAAGCTTAA-TTTCTTAGCAAAGCATAC-AGGTCCTTCCATATAACCACTGCCTACCTGTCAAGCTTCATCTGGCACTCCC-TCAGATCCAAGCGGTACAAAACTC--CATTTCCTGTAGTGCACACATCTACAACTTTTTAAGCTGCTGTTC---TAAAAAAACC-----TACTTGTCGGCCTTCCTGGTTCTTGTTTTAACACTTTCTTTTGCTCTC---TAAGAAACGTGCATATATTTTTAT----AAAAT-AGCCTATACTGTAATTTACGACCATTTCTCTGC-TTCATCCTACTCATCACCCCAGAGAGA-------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74894022 417 + 122973662 cactgtacaTTTGAACTGTT-CTGGCAGTTGACTTTCCTGACCCACTCCTGAAATCTGAAACAAACCTGTTCATGTTTCTACCTGACTTTAAGCCTTTCTCTGGCCCATAACAGTGATTGGATTAAGCTCAA-TTTCTTAGCAAAGCATAC-AGGTCCTTCCATATAACCACTACTTACCTGTCAAGCTTCATCTGGCACTCCC-TCAGATCCAAGCGGTACAAAACTC--CATTTCCTGTAGTGCACACATCTACAACTTTTTAAGCTGCTCTTC---TAAAAAAACC-----TACTTGTCGGCCTTCCTGGTTCTTGTTTTACCACTTTCTTTTGCTCTC---TAAGAAACGTGCGTATATTTTTAT----AAAAT-GGCCTATACTGTAATTTGCGACCATTTCTCTGC-TTCATTCTACTTACCACCCCAGAGAGA-------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30767856 414 + 172585720 CATTGTACATTTCAACTGTT-CTGGCAGTTGACTTTCCTGACCCAAGCCTGAAATCTGAAACACACCTGTTCACGTTTCTACCCTACTTTAAGCCTTTCTCTGGCCCATAACAGTGATTGGATTAAGCTCAA-TTTCTTAGCAAAGCATAC-AGGTCCTTCCATATAACCACTGCCTACCTGTCAAGCCTCATCTGGCACTTCC-TCAGATTCAAGCGGTACAAAACTC--CACTTCCTGTAGTGCACACATCTACAACTTTTTAAGCTGCTCTTC---TAAAAAAACC-----TACTT---GGCCTTCCTGGTTCTTGTTTTACCACTTTCTTTTGCTCTC---TAAGAAACCTGCATATATTTTTAT----AAAAT-GGCCTATACTGCAATTTACGACCATTTATCTGC-CTCATCATACTCATCACCCCAGAGAGA-------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30062992 414 - 170955103 cattgtacaTTTCAACTGTT-CTGGCAGTTGACTTTCCTGACCCACGCCTGAAATCTGAAACACACCTGTTCACGTTTCTACCCTACTTTAAGCCTTTCTCTGGCCCATAACAGTGATTGGATTAAGCTCAA-TTTCTTAGCAAAGCATAC-AGGTCCTTCCATATAACCACTGCCTACCTGTCAAGCCTCATCTGGCACTTCC-TCAGATTCAAGCGGTACAAAACTC--CACTTCCTGTAGTGCACACATCTACAACTTTTTAAGCTGCTCTTC---TAAAAAAACC-----TACTT---GGCCTTCCTGGTTCTTGTTTTACCACTTTCTTTTGCTCTC---TAAGAAACCTGCATATATTTTTAT----AAAAT-GGCCTATACTGCAATTTACGACCATTTCTCTGC-CTCATCATACTCATCACCCCAGAGAGA-------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     312302 414 +   1495729 CATTGTACATTTCAACTGTT-CTGGCAGTTGACTTTCCTGACCCACGCCTGAAATCTGAAACACACCTGTTCACGTTTCTACCCTACTTTAAGCCTTTCTCTGGCCCATAACAGTGATTGGATTAAGCTCAA-TTTCTTAGCAAAGCATAC-AGGTCCTTCCATATAACCACTGCCTACCTGTCAAGCCTCATCTGGCACTTCC-TCAGATTCAAGCGGTACAAAACTC--CACTTCCTGTAGTGCACACATCTACAACTTTTTAAGCTGCTCTTC---TAAAAAAACC-----TACTT---GGCCTTCCTGGTTCTTGTTTTACCACTTTCTTTTGCTCTC---TAAGAAACCTGCATATATTTTTAT----AAAAT-GGCCTATACTGCAATTTACGACCATTTCTCTGC-CTCATCATACTCATCACCCCAGAGAGA-------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     410179 414 -    863181 cattgtacaTTTCAACTGTT-CTGGCAGTTGACTTTCCTGACCCACGCCTGAAATCTGAAACACACCTGTTCACGTTTTCACCCTACTTTAAGCCTTTCTCTGGCCCATAACAGTGATTGGATTAAGCTCAA-TTTCTTCGCAAAGCATAC-AGGTCCTTCCATATAACCACTGCCTACCTGTCAAGCCTCATCTGGCACTTCC-TCAGATTCAAGCGGTACAAAACTC--CATTTCCTGTAGTGCACACATCTACAACTTTTTAAGCTGCTCTTC---TAAAAAAACC-----TACTT---GGCCTTCCTGGTTCTTGTTTTACCACTTTCTTTTGCTCTC---TAAGAAACCTGCATATATTTTTAT----AAAAT-GGCCTATACTGCAATTTACGACCATTTCTCTGC-CTCATCATACTCATCACCCCAGAGAGA-------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29562265 417 -  71996105 cattgtacaTTTCAACTGTT-CTGGCAGTTGACTTTCCTGACCCACGCCTGAAATCTGAAACACACCTGTTCACGTTTCTACCCTACTTTAAGCCTTTCTCTGGCCCGTAACAGTGATTGGATTAAGCTCAA-TTTCTTAGCAAAGCATAC-AGGTCCTTCCATATAACCACTGCCTACCTGTCAAGCCTCATCTGGCACTTCC-TCAGATTCAAGCGGTACAAAACTC--CATTTCCTGTAGTGCACACATCTACAACTTTTTAAGCTGCTCTTC---TAAAAAAACC-----TACTTGTCGGCCTTCCTGGTTCTTGTTTTACCACTTTCTTTTGCTCTC---TAAGAAACCTGTATATATTTTTAT----AAAAT-GGCCTATACTGCAATTTACGACCATTTCTCTGC-CTCCTCATACTCATCACCCCAGAGAGA-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     246075 414 -    735854 CATTGTACATTTCAACTGTT-CTGGCAGTTGACTTTCCTGACCCACGCCTGAAATCTGAAACACACCTGTTCACGTTTTTACCCTACTTTAAGCCTTTCTCTGGCCCATAACAGTGATTGGATTAAGCTCAA-TTTCTTAGCAAAGCATAC-AGGTCCTTCCGTATAACCACTGCCTACCTGTCAAGCCTCATCTGGCACTTCC-TCAGATTCAAGCGGTACAAAACTC--CATTTCCTGTAGTGCACACATCTACAACTTTTTAAGCTGCTCTTC---TAAAAAAACC-----TACTT---GGCCTTCCTGGTTCTTGTTTTACCACTTTCTTTTGCTCTC---TAAGAAACCTGCATATATTTTTAT----AAAAT-GGCCTATACTGCAATTTACGACCATTTCTCTGC-CTCATCATACTCATCACCCCAGAGAGA-------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     200381 414 -   1829203 cattgtacaTTTTAACTGTT-TTGGCAGTTGACTTTCCTGACCCACTCCTGAAATCTGAAACACACCTGTTCACGTTTCTACGCTACTTTAAGCCTTTCTCTGGCCTGTAACAGTGATTGGATTAAGCTCAA-TGTCTTAGCAAAGCATAC-TGGTCCTTCCATATAACCACTGTCTACCCGTCAAGCCTCATCTGGCACTTCC-TCAGATTCAAGCGGTACAAAACTC--CATTTCCGGTAGCGCACACATCTACAACTTTTTAAGCTGCTCTTC---TAAAAAAACC-----TACTTGTCGGCCTTCCTGGTTCTTGTTTTACCACTTTCTTTTGCTCTC---TAAGAAACCTGCATATATTTTTAT----AAAAT-GGCCTATACTGTAATTTACGACCATTTCTCTGC-C---TCATACTCATCACCCCAGAGAGA-------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30371864 416 + 171630274 CACTGTACATTTGAACTGTT-GCAGCAGTTGACTTTCCTGACCCACTCCTGAAATCTGAAACAAACCTATTCATGTTTCTACCCTATTTTAAGCCTTTCTCTGGCCCATAACACTGACTGGATTAAGCCCAAGTTTCTTAGGAAAGTATTC-AGATCCTTGCATATAACCACTACTTACCTGTCAAGCCTCATCTGGCAGTCCC-TCAGATCCAAGCAGTACAAAACTC--CATTTCCTGTAGTACACACATCTACAACTTTGTAAGCTGCTCTCT-------AAAACC-----TACTTGTCTGCCTTCCTGGTTCTTGTTTTACCACTTTCTTTTGCCCTC--TTAAGAAACGTGCATATATCTTTAT----AAAACGGGTCTATACTGTAATTTATGACCATTTCTCTGC-TTCATCCTACTCATCACCCCAGAGAGA-------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           196145 415 +    515838 cactgtacaTTTGAACTGTT-GCAGCAGTTGACTTTCCTGACCCActcctgaaatatgaaacaaacctattcatgtttctactctactttaagcctttctctggcccataacactgactggattaagcccaagtttcttagcaaagcattc-aggtccttgcatataaccactgcttacctgtcaagcctcatctGGCACTCCC-TCAGATCCAAGCAGTACAAAACTC--CATTTCCTGTAGTGCACACATCTACAACTTTGTAAGCTCCTCTCT-------AAAAGC-----TACTTGTCTGCCTTCCTGGTTCTTGTTTTACCACTTTCTTTTGCCCTC--TTAAGAAATGTGCATATATCTTTAT----AAAAT-GGCCTATACTGTAATTTATGACCATTTCTCTGC-TTCATCCTACTCATCACCCCAGAGAGA-------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     828280 415 -   1771730 cactgtacaTTTGAACTGTT-GCAGCAGTTGACTTTCCTGACCCACTCCTGAAATCTGAAACAAACCTATTCACGTTTCTACCCTACTTTAAGCCTTTCTCTGGCCCATAACACTGACTTGATTAAGCCCAAGTTTCTTAGCAAAGTATTC-AGGTCCTTGCATACAACCACTGCCTACCTGTCAAGCCTCATCTGGCAGTCCC-TCAGATCCAAGCAGTACAAAACTC--CATTTCCTGTAGTGCGCACATCTACAACTTTGTAAGCTGCTCTCT-------AAAACC-----TACTTGTCTGCCTTCCTGGTCCTTGTTTTACCACTTTCTTTTGCCCTC--TTAAGAAATGTGCATATATCTTTAT----AAAAT-GGTCTATACTGTAATTTATGACCATTTCTCTAC-TTCATCCTACTCATCACCCCAGAGAGA-------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     314091 415 -    383796 CACTGTACATTTGAACTGTT-GCGGCAGTTGACTTTCCTGACCCACTCCTGAAATCTGAAACAGACTTATTCACGTTTCTACCCTACTTTAAGCCTTTCTCTGGCCCATAACACTGATTGGATTAAGCCCAAGTTTCTTGGCAAAGCATAC-AGGTCCTTCCATATAACCACTGCCTACCTGTCAAGCCTCATCTGGCACTCTC-TCAGATCCAAGCAGTACAAAACTC--CATTTCCTGTAGTGCACACATCTACAACTTTGTAAGCTGCTCTCT-------AAAACC-----TACTTGTCTGCCTTCCTGGTTCTTGTTTTACCACTTTCTTTTGCCCTC--TTAAGAAATGTGCATATGTCTTTAT----AAAAT-GGCCTATACTGTAATTTATGACCATTTCTCTGC-TTCATCCTACTTATCACCCCAGAGAGA-------
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               293168 413 + 123392446 cactttacaTTTAAACTGTT-CTAGCAGTTGACTTTCCTGACCCACTCCTGAAATCTGAAACAAATCTGTTCATGTTTCTGTCC-TCTTTAACCGTTTCTCTGGCCCCTAACACTGACTGGATCAA-TCCAAAGTTCTTAGCAAAGCATCCTAGGCCTTTTCATGTAACTACCGCCTACCTGCCAAGCCTCCTCTGGCACTCCCTTTAGATCCTAGCAGTACAAAACTC--CATTTCTTTCAGTGCACACACCTATGAC--TGTAAGCTGTTCTCTACCTTAAAAAAAA----------ATCTGCCTTTCTGGTTCTTGCTTTCCCACTTT-TTTTACCCTC---TAAGAAACGTGCACATACTTTCAC----ATAAT-GGCCTATTTTGTAATTTATGACCATATCTCTGC-TTAGTCCTACTCATCACCCTAGAGAGA-------
i micMur3.chr6             C 0 I 72
s proCoq1.NW_012149775v1      97112 421 -   1411461 cactttacaTTTAAACTGTT-CTAGCAGTTGACTTTCCTGACCCACTCCTGAAATCTGAAACGAATCTGTTCATGTTTCTATCC-TCTTTAAGCCTTTCTCTGGCCCATAACACTGACTGGATCAAGTCCAAACTTCTTAGCAAAGTATCCTAGGGCTTTCCATACAACTACCGCCTACCTGCCAAGCCTTATCTGGCACTCCCCTTGGATCCCAGCAGTACAACACTC--CATTTCTTTCAGTGCACACACCTACGAC--TGTAAGCTGTTCTCTACCCTAAAAAAGA-----CATTTATCTGCCTTTCTGGTTCTTGTTTTCCCGCTTTCTTTTGTCTTC---TAAGAAACGTGCACATACTTTCAC----GTAAT-GTTCTATTTTGTAATTTATGACCATTTCTCTGCTTTAGTCCTACTCATCACCCCAGAGAGA-------
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           244230 404 +  18854210 CACTGAACATATGAACTGTT-TTGGCAATTGACTTTGCTAACCTACTCCTGAAATCTAAAACGAATCTATTTATGTTTCTACCCTTCTTTAAGCCTTTCTCTGGCCCATAACACTGATAGAATTAAATCCAAGCTTCTTGGCAAAGCATACTAGGGCT--------------------ACTGTCAAGCCTCATCTGGCACTCCCCTTAGATCCTAGCAGTAAAAAACTCT-TATTTCCTTCCTTGCACACACCTACAAC--CGCAAGCTGCTCTCTACCTAAAAAAAAAAAAAAAAAGTATCTGCCTTTCAGGTTCTTGTTTTGCCACTTTCTTTTGCCCTCTTTTAAGAGACCTGGATTTATTTTTAT----GTAAT-GTCCTAT------ATTCATGACCATATCTCTTC-TTAATACAACTCGTCACCCTTGAAAGA-------
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569887            19304 355 -     22419 CTCTGTACACTTAAACTGTTCCTGGCAGTTGACTTTCGTGACCCACTCCCGAAATCTGAAAGAAGTCTGTGCACGGTTC-ACCCTACTCTAAGCCTTTCCCTGGCTCATAACACGGACTGAATAAAGTCCAA-GTTCTTAGCAAA-------AG---------------CAGAGCCTACCTGC---------TTTGCCAAGCCT-TT--ACCCCAGTAGTACAAAACTCTGCATTTCCATTGGTGCACACGGCCCTGAC--------------TTC------------C-----CATTC-----CCTTCC---------TTTTAACATTGTCTTTTGCTCCC----GGAAAACTGGCACGTTTTTTTATCGCCAGATT-GCCCTGTGTTGTGATTCCTGGTCGTGTGTCTGC-TTCGTCTTA-----CACCCCAGCGGCTGGCTCAA
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58033150 2259 -  94987271 I
e canFam3.chr35            26288689 629 +  26524999 I

a score=767048.000000
s hg38.chr6_GL000254v2_alt  1410572 76 +   4827813 ACGAATATGTTGGCAGTATGTAACTACATTCAGATTTACAAATCAGACATGGCATT-TGTTAATGCCCC-AGTGTTTC
s panTro5.chr6             30283837 76 + 175400573 ACGAATATGTTGGCAGTATGTAACTACATTCAGATTTACAAATCAGACATGGCATT-TGTTAATGCCCC-AGTGTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30514533 76 + 173848474 ACGAATATGTTGGCAGTATGTAACTACATTCAGATTTACAAATCAGACATGGCATT-TGTTAATGCCCC-AGTGTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     221421 76 +   2037526 ACGAATATGTTGGCAGTATGTAACTACATTCAGATTTACAAATCAGACATGGCATT-TGTTAATGCCCC-AGTGTTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74894439 76 + 122973662 ATGAATATGTTGGCAGTATGTAACTACATTCAGATTTACAAATTAGACATGGCATT-TGTTAATGCCCC-AGTGTTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30768270 76 + 172585720 ATGAATATGTTGGCAGTATGTAACTACATTCAGATTTACAAATCCGATTTGGCATT-GGTTAATGCCCC-AATGTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30063406 76 - 170955103 ATGAATATGTTGGCAGTATGTAACTACATTCAGATTTACAAATCCGACTTGGCATT-TGTTAATGCCCC-AATGTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     312716 76 +   1495729 ATGAATATGTTGGCAGTATGTAACTACATTCAGATTTACAAATCCGACTTGGCATT-TGTTAATGCCCC-AATGTTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     410593 76 -    863181 ATGAATATGTTGGCAGTATGTAACTACATTCAGATTTACAAATCCGACTTGGCATT-TGTTAATGCCCC-AATGTTTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29562682 76 -  71996105 ATGAATATGTTGGCAGTATGTAACTACATTCAGATTTACAAATCCGACTTGGCATT-TGTTAATGCCCC-AATGTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     246489 76 -    735854 ATGAATATGTTGGCAGTATGTAACTACATTCAGATTTACAAATCCGACTTGGCATT-TGTTAATGCCCC-AACGTTTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     200795 76 -   1829203 ATGAATATGTTGGCAGGATGTAACTACATTCAGATTTACAAATCCGACTTGGCATT-TGTTAATGTCCC-AATGTTTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30372280 65 + 171630274 ------ATGTTGGCA----GTAACTAAATTCAGATTTACAGATCAGACTTGGCATT-TGTTAATGCTCC--ATACTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           196560 72 +    515838 ATGAGTATGTTGGCA----GTAACTAAATTCAGATTTACAGATCAGACATGGCATT-TGTTAATGCCCC-TATACTTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     828695 72 -   1771730 ATGAGCATGTTGGCA----GTAACTAAATTCAGATTTACAGATCAGACTTGGCATT-TGTTAATGCCCC-AATACTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     314506 72 -    383796 ATGAGTATGTTGGCG----GTTACTAAATTCAGATTTACAGATCAGACTTGGCATT-TGTTAATACCCC-AATACTTC
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      97533 72 -   1411461 ----GTACGTTGGTA--GTGTAACTAAATTCAGTTTCACAGATCAGACTTAGTTCCATGTTTATGCCCCCAGTGTCTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           244634 70 +  18854210 ----GTATGTTGGTAGTGTGTAATCAAACTCAGTTTCACAGATCATAC----TGCTATATTTATGCCCCCAATGTCTT
i otoGar3.GL873550         C 0 I 6
s dasNov3.JH569887            19659 74 -     22419 GTGACAGTCTGAACAGCACGCGACGAAGCCCCGTTTCCTCGGTCATGCTTG-CTTC-TCTTAAC-CCCC-AGGGCCCT
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               293581 72 + 123392446 I
e mm10.chr17               58033150 2259 -  94987271 I
e canFam3.chr35            26288689 629 +  26524999 I

a score=498350.000000
s hg38.chr6_GL000254v2_alt  1410648 35 +   4827813 ATATTTTTGTTAGTTTTCAGCATGCCTGTCTTTCC
s panTro5.chr6             30283913 35 + 175400573 Atatttttgttagttttcagcatgcctgtctttcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30514609 35 + 173848474 Atatttttgttagttttcagcatgcctgtctttcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     221497 35 +   2037526 Atatttttgttagttttcagcatgcctgtctttcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74894515 35 + 122973662 Atatttttgttagttttcagcatgcctgtctttcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30768346 35 + 172585720 ATATTTttgttagttttcagcatgcctatcttttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30063482 35 - 170955103 Atatttttgttagttttcagcatgcctatcttttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     312792 35 +   1495729 Atatttttgttagttttcagcacgcctatcttttc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     410669 35 -    863181 Atatttttgttagttttcagcatgcctatcttttc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29562758 35 -  71996105 ATATTTttgttagtttccagcatgcctgtcttttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     246565 35 -    735854 Atatttttgttagttttcagcatgcctgtcttttc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     200871 35 -   1829203 ATTTTTTTGTTAGTTTTCAGcatgcctgtcttttc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30372345 35 + 171630274 ATATTTTTGTCAGTTTTCCGCTTGCCTACCTTTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           196632 35 +    515838 Atatttttgtcagttttcaacttgcctatctttcc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     828767 35 -   1771730 Atatttttgtcagttttcagcttgcctatctttcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     314578 35 -    383796 ATATTTTTGTCAGTTTTCAGCTTGCCTATCTTTCC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               293653 35 + 123392446 ATATTTTTGTTAGTTCTGAGCATGCCCGTCTTTCC
i micMur3.chr6             I 72 I 435
s proCoq1.NW_012149775v1      97605 35 -   1411461 ACACTTTTGTTAGTTCTGAGcatgcccgtctttcc
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           244710 35 +  18854210 CTATTTTTGTTAGTTCTGAGCGTGCCCGTTTTTCC
i otoGar3.GL873550         I 6 C 0
s dasNov3.JH569887            19733 35 -     22419 GTTTTCTCGTTAGTGCTGAGCGCGCCTGCCTTCCC
i dasNov3.JH569887         C 0 C 0
e mm10.chr17               58033150 2259 -  94987271 I
e canFam3.chr35            26288689 629 +  26524999 I

a score=46447.000000
s hg38.chr6_GL000254v2_alt  1410683  8 +   4827813 TACTAGA------G
s panTro5.chr6             30283948  8 + 175400573 tactaga------g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30514644  8 + 173848474 tactaga------g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     221532  8 +   2037526 tactaga------g
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74894550  8 + 122973662 tactaga------g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30768381 14 + 172585720 tactagactgggcg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30063517 14 - 170955103 tactagactgggcg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     312827 14 +   1495729 tactagactgggcg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     410704 14 -    863181 tactagactgggcg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29562793 14 -  71996105 tactagaccgggcg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     246600 14 -    735854 tactagactgggcg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     200906 14 -   1829203 tactagactgggcg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30372380  8 + 171630274 TACTAGAG------
i calJac3.chr4             C 0 I 1058
s saiBol1.JH378341           196667  8 +    515838 tactagac------
i saiBol1.JH378341         C 0 I 6
s cebCap1.NW_016107755v1     828802  8 -   1771730 tactagac------
i cebCap1.NW_016107755v1   C 0 I 6
s aotNan1.NW_018496904v1     314613  8 -    383796 TACTAGAC------
i aotNan1.NW_018496904v1   C 0 I 6
s proCoq1.NW_012149775v1      97640 14 -   1411461 cattagactgggag
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           244745 14 +  18854210 CACTAGATTGAGAG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569887            19768 10 -     22419 --CACGACGGGG--
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               293688 435 + 123392446 I
e mm10.chr17               58033150 2259 -  94987271 I
e canFam3.chr35            26288689 629 +  26524999 I

a score=748843.000000
s hg38.chr6_GL000254v2_alt  1410691  85 +   4827813 CTAAA---AGGCAGGGTC-TGAGCGTCTTACGCGCCTCCATCTTCAAGGCGTAGCACAGTGACTG---------AAAAAAACT--------GACGTTGAACGTGCA
s panTro5.chr6             30283956  85 + 175400573 ctaaa---aggcagggtc-tgagcgtcttacgcgcctccatcttcaaggcgtagcacagtgactg---------AAAAAAACC--------CACGTTGAACGTGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30514652  85 + 173848474 ctaaa---aggcagggtc-tgagcgtcttacgcgcctccatcttcaaggcgtagcacagtgactg---------AAAAAAACC--------CACGTTGAACGTGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     221540  85 +   2037526 ctaaa---aggcagggtc-tgagcctcttacgcgcctccaccttcaaggcgtagcacagtgactg---------AAAAAAACC--------CACGTTGAACGTGCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74894558  85 + 122973662 ctaaa---aggcagggtc-tgggcgtcttacgcgcctccatcttcaaggcgtagcacagtgactg---------AAAAAAACC--------CACGTTGAACGTGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30768395  86 + 172585720 ctaaa---aggcaaggtc-tgagcatcttacgcgcctccatctttaagccttagcacAGTGACTG--------AAAAAAAACC--------CACGCTGAACGTGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30063531  86 - 170955103 ctaaa---aggcaaggtc-tgagcatcttacgcgcctccatcttcaaggcttagcacagtgactg--------AAAAAAAACC--------CACGCTGAACGTGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     312841  86 +   1495729 ctaaa---aggcaaggtc-tgagcatcttacgcgcctccatcttcaaggcttagcacagtgactg--------AAAAAAAACC--------CACGCTGAACGTGCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     410718  86 -    863181 ctaaa---aggcaaggtc-tgagcatcttacgcgcctccatcttcaaggcttagcacagtgactg--------AAAAAAAACC--------CACGCTGAACGTGCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29562807  91 -  71996105 ctaataaaaggcaaggtc-tgagcatcttacgcgcctccatcttcaaggcttagcacaGTGACTG------AAAAAAAAAAAC--------CACGCTGAACGTGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     246614  87 -    735854 ctaac---aggcaaggtc-tgagcatcttaggcgcctccatcttcaaggcttagcacagtgactg-------AAAAAAAAACC--------CACGCTGAACGTGCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     200920  86 -   1829203 ctaaa---aggcagggtc-tgagcttcttacgtgcctccattttcaaggcttagcacagtgactg--------AAAAAAAACC--------CACGCTGAACGTGCA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           196681 102 +    515838 ctaaa---agtcaggctc-taagcgtcttacgcgcctccatcttcaaggcgcagcacagcgactggAAAAAACAAAAACAAAAAAAAAACCCACGTTGAACGTGCA
i saiBol1.JH378341         I 6 C 0
s cebCap1.NW_016107755v1     828816 100 -   1771730 ctcaa---agtcagggtc-tgagcgtcttacgcgcctgcatcttcaaggcgtagcacagtgactggaaaaaaaaaaaaaaaaaaaaaaa--CACATTGAACGTGCA
i cebCap1.NW_016107755v1   I 6 C 0
s aotNan1.NW_018496904v1     314627  90 -    383796 CTAAA-------AGGGTC-TGAGCGTCTTACTCGCCTCCATCTTCAAGGCGTAGCAGTGTGTGTGGaaaaaaaaaaaaaaaaa--------CACGTTGAACGTGCA
i aotNan1.NW_018496904v1   I 6 C 0
s proCoq1.NW_012149775v1      97654  84 -   1411461 ctaaa---cggcagggtc-tgagtgtcttaagtgcctccatgttcaaggcctcgcacagtgattg----------gAAAAACC--------CAAGCTGAACGTGCA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           244759  84 +  18854210 CTAAA---CACCAAGATCTTGGGTGTTTTATGTGCCTTCATGTTTAAGGCTTCTCACAGTGACTG----------GAAAAATC--------CAAGCTGAA-ATGCA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569887            19778  35 -     22419 -CTGA---CGGCAGGGGC-TGCGTGTTGCAGG-------------AAGGCGCG-----------------------------------------------------
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               293688 435 + 123392446 I
e mm10.chr17               58033150 2259 -  94987271 I
e canFam3.chr35            26288689 629 +  26524999 I
e calJac3.chr4             30372388 1058 + 171630274 I

a score=2050861.000000
s hg38.chr6_GL000254v2_alt  1410776 190 +   4827813 CTAAACTGAACTGCTCAAACACCTACAGGCACAGGGCGAGGGGTAGAA-CCACATCGCTTGACTCTTAAGTGTGTTTCCAACTGCTCCCACTTCCCGTTT-TCTTTAGAGAAACCCAGACCA---AAC---AAGGAAAGGGAAATAGGCCACGGTAGGGTCATTACTATTGCTCCTTAAGCTTCCT-CGCCGGTCCACC
s panTro5.chr6             30284041 190 + 175400573 CTAAACTGAACTGCTCAAACACCTACAGGCACAGGGCGAGGGGTAGAA-CCACATCGCTTGACTCTTAAGTGTGTTTCCAACTGCTCCCACTTCCCGTTT-TCTTTAGAGAAACCCAGACCA---AAC---AAGGAAAGGGAAATAGGCCACGGTAGGGTCATTACTATTGCTCCTTAAGCTTCCT-CGCCGGTCCACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30514737 190 + 173848474 CTAAACTGAACTGCTCAAACACCTACAGGCACAGGGCGAGGGGTAGAA-CCACATCGCTTGACTCTTAAGTGTGTTTCCAACTGCTCCCACTTCCCGTTT-TCTTTAGAGAAACCCAGACCA---AAC---AAGGAAAGGGAAATAGGCCACGGTAGGGTCATTACTATTGCTCCTTAAGCTTCCT-CGCCGGTCCACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     221625 190 +   2037526 CTAAACTGAACTGCTCAAACACCTACAGGCACAGGGCGAGGGGTAGAA-CCACATCGCTTGACTCTTAAGTGTGTTTCCAACTGCTCCCACTTCCCGTTT-TCTTTAGAGAAACCCAGACCA---AAC---AAGGAAAGGGAAATAGGCCACGGTAGGGTCATTACTATTGCTCCTTAAGCTTCCT-CGCCGGTCCACC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74894643 190 + 122973662 CTAAACTGAACTGCTCAAACACCTACAGGCACAGGGCGAGGGGTAGAA-CCACATCGCTTGACTCTTAAGTGTGTTTCCAACTGCTCCCACGTCCCGTTT-TCATTAGAGAAACCCAGACCA---AAC---AAGGAAAGGGAAATAGGCCACGGTAGGGTCATTACTATTGCTCCTTAAGCTTCCT-CGCCTGTCCACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30768481 190 + 172585720 CTAAACTGAACTGCTTAAACACCTACAGGCACAAGGCGAGGGCTAGAA-CCATATCGCTTGACTCTTAAGTGTGTTTCCAACTGCTCCCACATCCCGTTT-TCATTAGAGAAACCCAGACCA---AAC---AAGGAAAGGGAAATAGGCCGCCGTAGGCTCATTACTATTGCTCCTTAAGTTTCCT-CGCCGGTCCAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30063617 190 - 170955103 CTAAACTGAACTGCTTAAACACCTACAGGCACAAGGCGAGGGCTAGAA-CCATATCGCTTGACTCTTAAGTGTGTTTCCAACTGCTCCCACATCCCGTTT-TCATTAGAGAAACCCAGACCA---AAC---AAGGAAAGGGAAATAGGCCGCCGTAGGCTCATTACTATTGCTCCTTAAGTTTCCT-CGCCGGTCCAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     312927 190 +   1495729 CTAAACTGAACTGCTTAAACACCTACAGGCACAAGGCGAGGGCTAGAA-CCATATCGCTTGACTCTTAAGTGTGTTTCCAACTGCTCCCACATCCCGTTT-TCATTAGAGAAACCCGGACCA---AAC---AAGGAAAGGGAAATAGGCCGCCGTAGGCTCATTACTATTGTTCCTTAAGTTTCCT-CGCCGGTCCAGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     410804 190 -    863181 CTAAACTGAATTGCTTAAACACCTACAGGCACAAGGCGAGGGCTAGAA-CCACATCGCTTGATTCTTAAGTGTGTTTCCAACTGCTCCCACATTCCGTTT-TCATTAGAGAAACCCAGACCA---AAC---AAGGAAAGGGAAATAGACCGCCGTAGGCTTATTACTATTGCTCCTTAAGTTTCCT-CGGCGGTCCAGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29562898 190 -  71996105 CTAAACTGAACTGCTCAAACACCTACAGGCACAAGGCGAGGGCTAGAA-CCACATCGCTTGACTCTTAAACGTGTTTCCAACTGCTCCCACATCCCGTTT-TCATTAGAGAAACCCAGACCA---AAC---AAGGAAAGGGAAATAGGCTGTGGTAGGGTCATTACTATTGCTCGTTAAGTTTCCT-CGCCGGTCCAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     246701 190 -    735854 CTAAACCGAACTGCTCAAACACCTACAGGCACAAGGCGAGGGCTAGAA-CCACATCGCTTGACTCTTAAGTGTGTTTCCAATTGCTCCCACATCCCGTTT-TCATTAGAAAAACCCAGACCA---AAC---AAGGATAGGGAAATAGGCCGCGGTAGGGTCATTACTATTGCTCCTTAAGTTTCCT-CGCCGGTCCAGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     201006 190 -   1829203 CTAAACTGAACTGCTCAAACACCTACAGGCACAAGGCGAGGGCTACAA-CCACATCGCTTGACTCTTAAGTGTGTTTCCAACTGCTCCCACATCCCGTTT-TCATTACAGAAACCCAGACCA---AAC---AAGGAAAGGGAAATAGGCCGCGGTAGGGTCATTACTATTGCTCCTTAAGTTTCCT-CGCCGGTCCCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30373446 191 + 171630274 CTAAGTTGCCCTGCTCAAACACCTACAGGCACGAGGCGAGGGCTAGGACCCACATCACTTGAGTCTTAAGTGTGTTTCCAACTGCTCCCAAGTTCCTTTT-TCATTAGAGAAACCCAGACGAAACAAC---AAGGAAAGGGAAATAGGCCACGATAGGGTC--TA-TATTTCTCCTCAAGTTTCCT-CGCCCGTCCACT
i calJac3.chr4             I 1058 C 0
s saiBol1.JH378341           196783 187 +    515838 CTTAACTGCCCTGCTCAAACACCTACAGGCACAGGGCGAGGGCTAGGACCCACATCGCTTGAGTCTTAAGTGTGCTTCCAACTGCTCCCAAGTTCCCTTT-TCATTAGAGAAACCCAGACGA---AAC---AAGGAAAGAGAAATAGGCCACGATAGGCTC--TA-TACTGCTCCTCAAGTTT-CT-CGCCCGTCCACC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     828916 191 -   1771730 CTAAACTGCCCTGCTCAAACACCTACAGGCACAGGGCGAGGGCTAGGACCCACATCGCTTGAGTCTTAAGTGTGTTTCCAACTGCTCCCAAGTTCCCTTT-TCATTAGAGAAACCCAGACGAAACAAC---AAGGAAAGAGAAATAGGCCACGATAGGGTC--TA-TATTGCTCCTCAAGTTTCCT-CGCCCGTCCACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     314717 188 -    383796 CTAAACTGCCCTGCTCAAACACCTACAGGCACAGGGCGAGGGCTAGGACCCACATCGTTTGAGTCTTAAGTGTGTTTCCAACTGCTCCCAAGTCCCTTTT-TCATTAGAGAAACCCAGACGA---AAC---AAGGAAAGGGAAATAGGCCACGATAGGGTC--TA-TATTGCTCCTCTAGTTTCCT-CGACCGTCCACT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      97738 188 -   1411461 GTAAG------TGCTCAAACACCTACAAGCACATGGTGAAGACCAGAACCCCGATCGCTTGCATCTTAATCTTATTTCCAACCGCTCCCAGGTCCCGTTTCTCTCCAAGGAAA-CCAAACCA---AACGATAAAGAAACGACAATAGCCCA-GGTAGGGTCATTACTATTGCCCCTTAAGTTTCCTGCGCCCTTCCACC
i proCoq1.NW_012149775v1   C 0 I 167
s otoGar3.GL873550           244843 194 +  18854210 CTAAATT-CCCTGCTCAAACACCTACAGGCACAGGACAAGGACCAGAACCCAGATCGCTTGATTCTTTAGTGTGTTTCCAACTGTTCCCATGTCCCGTTTCTCAGTAGGGAAACCCACAGTA---AACGATAAGGAAACGAAAATAAGGCA-GGCAGGATCATTACCATTACCCATTAAGTTTTCCTCGTCCTTTCACC
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569887            19813 127 -     22419 ----------------------CTTCGGACACCGGGCGAGGGCCAGAA-CCGAGACGGAGGGTCTTCAAGCGCG-------------CCACGGCCTGCCT-CCCC------AGTCCAGGACA---AAC----------------------GCTCAGGAGCCATAACTATTGCCC--TCGGTTGCCC-CGCGCCTCCTC-
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               293688 435 + 123392446 I
e mm10.chr17               58033150 2259 -  94987271 I
e canFam3.chr35            26288689 629 +  26524999 I

a score=1517918.000000
s hg38.chr6_GL000254v2_alt  1410966 153 +   4827813 TACCCAGA---CAAGGCAAACGGA--AATCTGCAGCAGGACTCAGCTTG-GTGCACACA---ACTCCGCCCT------CGCCACACCCACTCTGCAGCGTCTGGCCCG-------GCAATACCCATCTGGGCG-CCCCTCC-TGCTTCCTCTAGGCTGTGAGTACGCGTGCTGCCCC
s panTro5.chr6             30284231 153 + 175400573 TACCCAGA---CAAGGCAAACGGA--AATCTGCAGCAGGACTCAGCTTG-GTGCACACA---ACTCCGCCCT------CGCCACACCCACTCTGCAGCGTCTGGCCCG-------GCAATACCCATCTGGGCG-CCCCTCC-TGCTTCCTCTAGGCTGTGAGTACACGTGCTGCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30514927 153 + 173848474 TACCCAGA---CAAGGCAAACGGA--AACCTGCAGCAGGACTCAGCTTG-GTGCACACA---ACTCCGCCCT------CGCCACACCCACTCTGCAGCGTCTGGCCCG-------GCAATACCCATCTGGGCG-CCCCTCC-TGCTTCCTCTAGGCTGTGAGTACGCCTGCTGCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     221815 153 +   2037526 TACCCAGA---CAAGGCAAACGGA--AATCTGCAGCAGGACTCAGCTTG-GTGCACACA---ACTCCGCCCT------CGCCACACCCACTCTGCAGCGTCTGGCCCG-------GCAATACCCATCTGGGCG-CCCCTCC-TGCTTCCTCTAGGCTGTGAGTACGCGTGCTGCCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74894833 153 + 122973662 TACCCAGA---CAAGGTAAATGGA--AATCTGCAGCAGGACTCAGTTTG-GTGCACACA---ACTCCGCCGT------CGCCACACCCACTCTGCAGCGTCTGGCCCG-------GCCCTACCCATCTGGGCG-CCCCTCC-TGCTTCCTCTAGGCTGTGAGTACGCGTGCTGCCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30768671 153 + 172585720 TACCCAGA---CAAGGTAAATGGA--AATCTGCAGCAGGACTCAGCTTG-GTGCACACA---ACTCCGCCCT------CGCCACACCCACTCTGCAGCGTCTGGCCCG-------GCCCTACTCATCTGGGCG-CCCCTTC-TGCTTCCGCTAGGCTGTGAGTACGCGTGCTGCCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30063807 153 - 170955103 TACCCAGA---CAAGGTAAATGGA--AATCTGCAGCAGGACTCAGCTTG-GTGCACACA---ACTCCGCCCT------CGACACACCCACTCTGCAGCGTCTGGCCCG-------GCCCTACTCATCTGGGCG-CCCCTTC-TGCTTCCGCTAGGCTGTGAGTACGCGTGCTGCCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     313117 153 +   1495729 TACCCAGA---CAAGGTAAATGGA--AATCTGCAGCAGGACTCAGCTTG-GTGCACACA---ACTCCGCCCT------CGACACACCCACTCTGCAGCGTCTGGCCCG-------GCCCTACTCATCTGGGCG-CCCCTTC-TGCTTCCGCTAGGCTGTGAGTACGCTTGCTGCCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     410994 153 -    863181 TACCCAGA---CAAGGTAAATGGA--AATCTGCAGCAGGACTCAGCTTG-GTGCACACA---ACTCCGCCCT------CGCCACACCCACTCTGCAGCGTCTGGCCCG-------GCCCTACTCATCTGGGCG-CCCCTTC-TGCTTCCGCTAGGCTGTGAGTACGCGTGCTGCCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29563088 153 -  71996105 TACCCAGA---CAAGGTAAATGGA--AATCTGCAGCAGGACTCAGCTTG-GTGCACACA---ACTCCGCCTT------CGCCACACCCACTCTGCAGCGTCTGGCCCG-------GCCCTGCTCATCTGGGCG-CCCCTTC-TGCTTCCTCTAGGCTGTGAGTACGCGTGCTGCCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     246891 153 -    735854 TACCCAGA---CAAGGTAAATCGA--AATCTGCAGCAGGACTCAGCTTG-GGGCACACA---ACTCCGCCCT------CGCCACACCCACTCTGCAGCGTCTGGCCCG-------GCCCTACTCATCTGGGCG-CCCCTTC-TGCTTCCGCTAGGCTGTGAGTACGCGTGCTGCCCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     201196 153 -   1829203 TACCCAGA---CAAGGTAAATGGA--AATCTGCAGCAGGACTCAGCTTG-GTGCACACA---ACTCCGCCCT------CGCCACACCCACTCTGCAGCGTCTGGCTCG-------GCCCTACCCATCTGGGCG-CCCCTTC-TGCTTCCTCTAGGTTGTGAGTACGCGTGCTGCCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30373637 149 + 171630274 CACCCAGA---CAGGGTAAATGGA-----CTGCGGCAGGACTCAGCCTG-GTGCACAC----ACCTCGCCCT------CGTCACACCCACTATGCAGTTTCTTGCCCG-------GCTGTACCCATCTGGGCG-CCTCTCC-TGCTTCCTCTAGGCTGTGCAAGCGCGAGCTGCCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           196970 150 +    515838 CACCCAGG---CAGGATAAATGGA-----CTGCGGCAGGACTCAGCTTATGCACACAC----ACCCCGCCCT------CGCCACACCCACTATGCAGCTTCGGGCCCG-------GCCGTACCCATCTGGGCG-CCTCTCC-TGCTTCCTCTAGGCTGTGCGAGCCCGAGAGGCCCG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     829107 149 -   1771730 CACCCAGA---CAGGATAAATGGA-----CTGCGGCAGGACTCAGCTTG-GTGCACAC----ACCCCGCCCT------CGCCACACCCACTATGCAGCTTCTGGCCCG-------GCTGTACCCATCTGAGCG-CCTCTCC-TGCTTCCTCTAGGCTGTGCGAGCGCCAGCCGCCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     314905 148 -    383796 CACCCAGA---CAGGATAAATGGA-----CTGC-GCCGGACTCAGCGTA-GTGCACAC----ACCCCGCCCT------CGCCACACCCACTCTGCAGCTTCTGGCCCG-------GCCGTACCCATCCGGGCG-CCTCTCC-TGCTTCCTCTAGGCTGTGCGAGCGCGAGCTGCCCT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           245037 156 +  18854210 GACCCAGA---AAGGGTAGATGGACTAAGCTATAGGACTTCTCAACTTG-GCGCGAACA---CACCCGCTTT------CGCCGCACCCAATCTGCAACAAGCTACCGG-------GTTCTACACTTCCCGGCGCCCCCTCC-TGCAGCATCTCCGTCGTACGTGCATACGCCACCCT
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569887            19940 163 -     22419 TGCCCGGAGTTTAAGCTCACTGGA----CCTTCAG----GCTC--CCTG-GTGCGCGTGCGCCTGCTGCCCTTGAGGCCGCCCCTTCCGGCCTGT--TCTCTGGCGCGCACGCGCGTGGTGCCCTTGAGAACC-TCCCTTCAGGCCTGCTCCCTGGTGCGCGTGCGCCTGCTGCCCT
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               293688 435 + 123392446 I
e mm10.chr17               58033150 2259 -  94987271 I
e proCoq1.NW_012149775v1      97926 167 -   1411461 I
e canFam3.chr35            26288689 629 +  26524999 I

a score=124910.000000
s hg38.chr6_GL000254v2_alt  1411119 17 +   4827813 AGACTCTCCCTCCTCCA----
s panTro5.chr6             30284384 17 + 175400573 AGACTCTCCCTCCTCCA----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30515080 17 + 173848474 AGACTCTCCCTCCTCCA----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     221968 17 +   2037526 AGACTCTCCCTCCTCCA----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74894986 17 + 122973662 TGACTCTCCCTCCTCCA----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30768824 17 + 172585720 TGAGTCTCCCTCCGCCT----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30063960 17 - 170955103 TGAGTCTCCCTCCGCCT----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     313270 17 +   1495729 TGAGTCTCCCTCCGCCT----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     411147 17 -    863181 TGAGTCTCCCTCCGCCT----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29563241 17 -  71996105 TGAGTCTCCCTCCGCCT----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     247044 17 -    735854 TGAGTCTCCCTCCGCCT----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     201349 17 -   1829203 TGACTCTCCCGCCGCCT----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30373786 17 + 171630274 TGACTCTCGCCCCGCCT----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           197120 17 +    515838 TGACTCTCGCCCCGCCT----
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     829256 17 -   1771730 TGACTCTCGCTCCGCCC----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     315053 16 -    383796 TGACTCTCGCTCCGCC-----
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           245193 16 +  18854210 TGACCTTACCCCCACC-----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58035409 15 -  94987271 --AGCCTTGCCTAGCCC----
i mm10.chr17               I 2259 I 2
s dasNov3.JH569887            20103 21 -     22419 TGAGCCCGCCCCAGGCCTTTG
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               293688 435 + 123392446 I
e proCoq1.NW_012149775v1      97926 167 -   1411461 I
e canFam3.chr35            26288689 629 +  26524999 I

a score=80595.000000
s hg38.chr6_GL000254v2_alt  1411136 6 +   4827813 CCCACA
s panTro5.chr6             30284401 6 + 175400573 CCCACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30515097 6 + 173848474 CCCACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     221985 6 +   2037526 CCCACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74895003 6 + 122973662 CCCACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30768841 6 + 172585720 CCCACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30063977 6 - 170955103 CCCACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     313287 6 +   1495729 CCCACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     411164 6 -    863181 CCCACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29563258 6 -  71996105 CCCACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     247061 6 -    735854 CCCACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     201366 6 -   1829203 CCCACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30373803 6 + 171630274 CCGACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           197137 6 +    515838 CCCATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     829273 6 -   1771730 TCCACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     315069 6 -    383796 CCCACA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      98093 6 -   1411461 CCCACA
i proCoq1.NW_012149775v1   I 167 C 0
s otoGar3.GL873550           245209 6 +  18854210 TCCACA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58035426 5 -  94987271 -CCCCC
i mm10.chr17               I 2 C 0
s dasNov3.JH569887            20124 6 -     22419 CCTGAA
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               293688 435 + 123392446 I
e canFam3.chr35            26288689 629 +  26524999 I

a score=458144.000000
s hg38.chr6_GL000254v2_alt  1411142 33 +   4827813 CCCGCAGTGACACCCCTTCCGCCAAATTTGTTT--
s panTro5.chr6             30284407 33 + 175400573 CCCGCAGTGACACCCCTTCCGCCAAATTTGTTT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30515103 33 + 173848474 CCCGCAGTGACACCCCTTCCGCCAAATTTGTTT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     221991 33 +   2037526 CCCGCAGTGACACCCCTTCCGCCAAATTTGTTT--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74895009 33 + 122973662 TCCGCAGTGACACCCCTTCCGCCAAGTTTGTTT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30768847 33 + 172585720 CCCGCAGTGACACCCCTTCCGCCAAATTTGTTT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30063983 33 - 170955103 CCCGCAGTGACACCCCTTCCGCCAAATTTGTTT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     313293 33 +   1495729 CCCGCAGTGACACCCCTTCCGCCAAATTTGTTT--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     411170 33 -    863181 TCCGCAGCGACACCCCTTCCGCCAAATTTGTTT--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29563264 33 -  71996105 CCCGCAGTGACACCCCTTCCGCCAAATTTGTTT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     247067 33 -    735854 CCCGCAGTGACACCCCTTCCGCCAAATTTGTTT--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     201372 33 -   1829203 CCCGCAGTGACACCCCTTCCGCCAAATTTGTTT--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30373809 33 + 171630274 CCGGCAATGATACCCCTTCCGCCAAATTTGTTT--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           197143 33 +    515838 CCCGCAGTGATACCCCTTCCGCCAAATTTGTTT--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     829279 33 -   1771730 CCCGCAGTGATACCCCTTCCGCCAAATTTGTTT--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     315075 33 -    383796 CCCACCGCGATACCCCTTCCGCCAAATTTGTTT--
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1      98099 33 -   1411461 GCCGCACTGACGCCTCTTCCGCTAAATTTGACT--
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           245215 33 +  18854210 CCTGCAGTGACGCCCCTTCCGCTAAATTCGTTC--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58035431 25 -  94987271 CCCACTATGACATCACTTCTGCCAA----------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26289318 25 +  26524999 CCCGCAGCGTCGCCTTCTCTGCGGG----------
i canFam3.chr35            I 629 C 0
s dasNov3.JH569887            20130 32 -     22419 --CGCAGTGACGCTCCTTCCGCCAG-CTTGCGGAA
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               293688 435 + 123392446 I

a score=3415126.000000
s hg38.chr6_GL000254v2_alt  1411175 196 +   4827813 CTCTTTCTTTCAGCGCCTGCGCGCTGTCACGTTACGGCGGAACTAATCCAGCGACGCCTGCGCTTTGACGCATTTGGTGCCG-TGGAAGGGAAAAAGGGGGACTGCAGTATGCGTCACACCCGGAAGCGGCGAGCCGGAAGTGGGGTTAGCCAGGTTATCCCCAGGGGTGGAGAAGCGGAGGCCCAGGAGG-AGGGGG
s panTro5.chr6             30284440 196 + 175400573 CTCTTCCTTTCAGCGCCTGCGCGCTGTCACGTTACGGCGGAACTAATCCAGCGACGCCTGCGCTTTGACGCATTTGGTGCCG-TGGAAGGGGAAAAGGGGGACTGCAGTATGCGTCACACCCGGAAGCGGCGAGCCGGAAGTGGGGTTGGCCAGGTTATCCCCAGGGGTGGAGAAGCGGAGGCCCAGGAGG-AGGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30515136 196 + 173848474 CTCTTCCTTTCAGCGCCTGCGCGCTGTCACGTTACGGCGGAACTAATCCAGCGACGCCTGCGCTTTGACGCATTTGGTGCCG-TGGAAGGGGAAAAGGGGGACTGCAGTATGCGTCACACCCGGAAGCGGCGAGCCGGAAGTGGGGTTGGCCAGGTTATCCCCAGGGGTGGAGAAGCGGAGGCCCAGGAGG-AGGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     222024 196 +   2037526 CTCTTTCTTTCAGCGCCTGCGCGCTGTCACGTTACGGCGGAACTAATCCAGCGACGCCTGCGCTTTGACGCATTTGGTGCCG-TGGAAGGGAAAAAGGGGGACTGCAGTATGCGTCACACCCGGAAGCGGCGAGCCGGAAGTGGGGTTGGCCAGGTTATCCCCAGGGGTGGAGAAGCGGAGGCCCAGGAGG-AGGGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74895042 196 + 122973662 CTCTTTCTTTCAGCGCCTGCGCGCTGTCACGTTACGGCGGAACTAATCCAGCGACGCCTGCGCTTTGACGCATTTGGTGCCG-CGGAAGGGAAAAAGGGGGACTGCAGTATGCGTCACACCCGGAAGCGGCGAGCCGGAAGTGGGGTTGGCCAGGTTATCCCCAGGGGTGGAGAAGCGGAGGCCCAGGAGG-AGGGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30768880 196 + 172585720 CTCTTTCTTTCAGCGCCTGCGCGCCGTCACGTTACGGCGGAACTAATCCAGCGACGCCTGCGCTTTGACGAATTTGGTGCCG-CGGAAGGGAAAAAGGGGGATAGCAGCATGCGTCACACCCGGAAGCGGCGAGCCGGAAGTGGGGTTGGCCAGGTTATCCCCAGGGGTGGAGAAACGGAGGCCCAGGAGG-AGGGGG
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             30064016 196 - 170955103 CTCTTTCTTTCAGCGCCTGCGCGCCGTCACGTTACGGCGGAACTAATCCAGCGACGCCTGCGCTTTGACGAATTTGGTGCCG-CGGAAGGGAAAAAGGGGGACAGCAGCATGCGTCACACCCGGAAGCGGCGAGCCGGAAGTGGGGTTGGCCAGGTTATCCCCAGGGGTGGAGAAACGGAGGCCCAGGAGG-AGGGGG
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     313326 196 +   1495729 CTCTTTCTTTCAGCGCCTGCGCGCCGTCACGTTACGGCGGAACTAATCCAGCGACGCCTGCGCTTTGACGAATTTGGTGCCG-CGGAAGGGAAAAAGGGGGACAGCAGCATGCGTCACACCCGGAAGCGGCGAGCCGGAAGTGGGGTTGGCCAGGTTATCCCCAGGGGTGGAGAAACGGAGGCCCAGGAGG-AGGGGG
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     411203 196 -    863181 CTTTTTCTTTCAGCGCCTGCGCGCCGTCACGTTACGGCGGAACTAATCCAGCGACGCCTGCGCTTTGACGAATTTGGTGCCG-CGGAAGGGAAAAAGGGGGACAGCAGCATGCGTCACACCCGGAAGCGGCGAGCCGGAAGTGGGGTTGGCCAGGTTATCCCCAGGGGTGGAGAAACGGAGGCCCAGGAGG-AGGGGG
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29563297 196 -  71996105 CTCTTTCTTTCAGCGCCTGCGCGCCGTCACGTTACGGCGGAACTAATCCAGCGACGCCTGCGCTTTGACGAATTTGGTGCCG-CGGAAGGGAAAAAGGGGGACAGCAGCATGCGTCACACCCGGAAGCGGCGAGCCGGAAGTGGGGTTGGCCAGGTTATCCCCAGGGGTGGAGAAACGGAGGCCCAGGAAG-AGGGGG
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1     247100 196 -    735854 CTTTTTCTTTCAGCGCCTGCGCGCCGTCACGTTACGGCGGAACTAATCCAGCGACGCCTGCGCTTTGACGAATTTGGTGCCG-CGGAAGGGAAAAAGGGGGACAGCAGCGTGCGTCACACCCGGAAGCGGAGAGCCGGAAGTGGGGTTGGCCAGGTTATCCCCAGGGGTGGAGAAACGGAGGCCCAGGAGG-AGGGGG
i manLeu1.NW_012107142v1   C 0 I 1
s colAng1.NW_012115577v1     201405 194 -   1829203 C--TTTCTTTCAGCGCCTGCGCGCCATCATGTTACGGCGGAACTAATCCAGCGACGCCTGCGCTTTGACGAATTTGGTGCCG-CGGAAGGGAAAAAGAGGGACTGCAGCATGCGTCACACCCGGAAGCTGCGAGCCGGAAGTGGGGTTGGCCAGGTTATCCCCAGGGGTGGAGAAACGGAGGCCCAGGAGG-AGGGGG
i colAng1.NW_012115577v1   C 0 M 205
s calJac3.chr4             30373842 196 + 171630274 CTCTTTCTTGCAGCGCCTGCGCGCTGTCACGTTACGGCGGAACTAATCCAGCGACGCCTGCGCTTTGACGCATTTGGTGCCG-GGGAAGGGAAAAAGGAGGACTGCAGAATGCGTCACACCCGGAAGCAGAGAGCCGGAAGTGGAGTTGGCCAGGCTATCCCGAGGGGTGGAGAAGCGGAGGCCCAAGAGG-AGGGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           197176 196 +    515838 CTCTTTCTTGCGGCGCCTGCGCGCTGGCACGTTACGGCGGAACTAATCCAGCGACGCCTGCGCTTTGACGCATTTGGTGCCG-GGGAAGGGAAAAAGGAGGACCGCAGAATGCGTCACACCCGGAAGCAGAGAGCCGGAAGTGGAGTTGGCCAGGTTATCCCGAGGGGTGGAGAAGCAGAGGCCCAGGAGG-AGGGGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     829312 196 -   1771730 CTCTTTTTTGCAGCGCCTGCGCGGTGTCACGTTACGGCGGAACTAATCCAGCGACGCCTGCACTTTGACGCATTTGGTGCCG-GGGAAGGGAAAAAGGAGGACTGCAGAATGCGTCACACCCGGAAGCAGAGAGCCGGAAGTGGAGTTGGCCAGGCTATCCCGAGGGGTGGAGAAGCGGAGGCCCAGGAGG-AGGGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     315108 196 -    383796 CTCTTTCTTGCAGCGCCTGCGCGCTGTCACGTTACGGCGGAACTAATCCAGCGACGCCTGCGCTTTGACGCATTTGGTGCCG-GGGAAGGGAAAAAGGAGGACTGCAGAATGCGTCACACCCGGAAGCAGAGAGCCGGAAGTGGAGTTGGCCAGGTTATCCCGAGGGGTGGAGAAGCGGAGGCCCAGGAGG-AGGGGG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               294123 196 + 123392446 CTCTTCCTTGCAGCGCCTGCGCACTGTCGTATTAGGGCGGAACTAATCCGGCGACGCCTGCGCTTTGACGCATTTGGTGCCG-GGAGTCGGGAAAGGGGGGACTGCAGAATGCGTCACACCCGGAAGCGGAGAGCCGGAAGTGGGGTTGGACAGGTTGTGCCCAGGGGTGGGGAAGCGAAGGCCCTGGAGG-AGGGGG
i micMur3.chr6             I 435 C 0
s proCoq1.NW_012149775v1      98132 195 -   1411461 TTCTTTCTTGCAGCGCCTGCGCGTTGTCATATTACGGCGGAACTAATCCGGCGACGCCTGCGCTTTGACGCATTTGGTGCCG-GGAGAAGGGAAA-AGGGGACCGCAGAATGCGTCACACCCGGAAGCGGAGAGCCGGAAGTGGGGTTGGACAAGTTATCCCCAGGGGTGGGGAAGCAGAGGCCCAGAAGG-AGGGGG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           245248 196 +  18854210 CTCTTTCTTGCAGCGCCTGCGTGCTGTCATATTACGGCGGAACTAATATGGCGGCGCCTGCGCTTTGACGCGTTTGGTGCCC-GGGTAGGAAAAA-GGGGGACGGCAGAACGCGTCACACCCGGAAGCGGAGAGCCGGAAGTGGGGTTGGACAGGTTATCCCCAGGGGTGGGGAAACGGAGGCCCAGGAGGAAGGGGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58035456 186 -  94987271 -------CCTCAGCGTCTGCGCACTATTGCATTACGGCGGAACTATTCTGGCGACGCCTG--CTTTGACCCAGGCGGTGGTG-GGGAAGGGAAAC-TGTGTTCTGCAGGATGCGTCACAACCGGAAGTGAAAGGCCGGAAGTGGGGTTGGACAGGTTTTCCCCAGGGGTGGGGAAGCAGAGGCCGTGGAGG-AGTAGG
i mm10.chr17               C 0 I 3
s canFam3.chr35            26289343 178 +  26524999 -------CTGCGGCACCTGCCCACCGTCACGTGACGGGAGAACTAGTCCGGCGGCGCATGCGTCCGGAGACCTTCGGCGCCA--GGAAGGGA----CGGCGACGGCGGAGTGCGTCACACCCGGAAGCGGCGAGCCGGAAGTGGAGCTGGGCAGGTTACCCCGGGGG-----GAAGCGGAGGCCGAGGAGG-AGGGG-
i canFam3.chr35            C 0 C 0
s dasNov3.JH569887            20162 193 -     22419 CTTGTTCCGGCGGCGCCTGCGCACTGGCACATTACGGCGGAACTAACCTGTCGGCGCCTGCGCTCTGACGCAGTTGGCGCGGAGGGGAAAGGAGAAAGGAGACCAAAGT---CCTCACACCCGGAAGCGAGGAGCCGGAAGTGGGGTTGGACCGGGTGTTTGCCGGGGTGGGGAAGCGGAGGTCCAGGAGG-AGGGG-
i dasNov3.JH569887         C 0 C 0

a score=3396812.000000
s hg38.chr6_GL000254v2_alt  1411371 217 +   4827813 AA-TAAAGAAGGTGGAGGATCCTGGCTACCACTCTGAATCCGATACCGCTTC------------------------TCTTAGACCTCAGCG--ACAGAAAAAGGGAAGGGTGTCTCATCCC-----CCTTCCTCCTCTCCTCCCTGTCCTGAGCCTTAGCCATGGCCGAGGCAGGGGCTGGGCTGAGCGAGACCGTC---------------ACTGAGACAACGGTTACCGTGACAACCGAGCCCGTGAGAAAGGC-------GGG--GGGGC
s panTro5.chr6             30284636 217 + 175400573 AA-TAAAGAAGGTGCAGGATCCTGGCTACCACTCTGAATCCGATACCGCTTC------------------------TCTTAGACCTCAGCG--ACAGAAAAAGGGAAGGGTGTCTCATCCC-----CCTTCCTCCTCTCCTCCCTGTCCTGAGCCTTAGCCATGGCCGAGGCAGGGGCTGGGCTGAGCGAGACCGTC---------------ACTGAGACAACGGTTACCGTGACAACCGAGCCCGTGAGAAAGGC-------GGG--GGGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30515332 217 + 173848474 AA-TAAAGAAGGTGGAGGATCCTGGCTACCACTCTGAATCCGATACCGCTTC------------------------TCTTAGACCTCAGCG--ACAGAAAAAGGGAAGGGTGTCTCGTCCC-----CCTTCCTCCTCTCCTCCCTGTCCTGAGCCTTAGCCATGGCCGAGGCAGGGGCTGGGCTGAGCGAGACCGTC---------------ACTGAGACAACGGTTACCGTGACAACCGAGCCCGTGAGAAAGGC-------GGG--GGGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     222220 217 +   2037526 AA-TAAAGAAGGTGGAGGATCCTGGCTACCACTCTGAATCCGATACCGCTTC------------------------TCTTAGACCTCAGCG--AGAGAAAAAAGGAAGGGTGTCTCATCCA-----CCTTCCTCCTCTCCTCCCTGTCCTGAGCCTTAGCCATGGCCGAGGCAGGGGCTGGGCTGAGCGAGACCGTC---------------ACTGAGACAACGGTTACCGTGACAACCGAGCCCGTGAGAAAGGC-------GGG--GGGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74895238 217 + 122973662 AA-TAAAGAAGGTGGAGGATCCTGGCTCCCACTCTGAATCCGATACCGCTTC------------------------TCTTAGACCTCAGCG--ACAGAAAAAGGGAAGGGTGTCTCATCCC-----CCTTCCTCCTCTCCTCCCTCTCCTGAGCCTTAGCCATGGCCGAGGCAGGGGCTGGGCTGAGCGAGACCGTC---------------ACTGAGACAACGGTTACCGTGACAACCGAGCCCGTGAGAAAGGC-------GGG--GGGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30769077 222 + 172585720 AA-AAAAGAAGGTGGAGGATTCTGGCTACCACTCTGAATCCGATACCGCTTC------------------------TCTTAGACCTCAGAG--ACAGAAAAAGGGAAGGGTGtctcatcccatcccctttcctcctctcctccctctcctGAGCCTTAGCCATGGCCGAGGCAGGGGCTGGGCTGAGCGAGACCGTC---------------ACTGAGACAACGGTTACCGTGACAACCGAGCCCGTGAGAAAGGC-------GGG--GGGGC
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30064213 223 - 170955103 AT-AAAAGAAGGTGGAGGATTCTGGCTACCACTCTGAATCCGATACCGCTTC------------------------TCTTAGACCTCAGAG--ACAGAAAAAGGGAAGGGTGtctcatcccatcccctttcctcctctcctccctctcctGAGCCTTAGCCATGGCCGAGGCAGGGGCTGGGCTGAGCGAGACCGTC---------------ACTGAGACAACGGTTACCGTGACAACCGAGCCCGTGAGAAAGGC------GGGG--GGGGC
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     313523 223 +   1495729 AT-AAAAGAAGGTGGAGGATTCTGGCTACCACTCTGAATCCGATACCGCTTC------------------------TCTTAGACCTCAGAG--ACAGAAAAAGGGAAGGGTGtctcatcccatcccctttcctcctctcctccctctcctGAGCCTTAGCCATGGCCGAGGCAGGGGCTGGGCTGAGCGAGACCGTC---------------ACTGAGACAACGGTTACCGTGACAACCGAGCCCGTGAGAAAGGC------GGGG--GGGGC
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     411400 222 -    863181 AA-AAAAGAAGGTGGAGGATTCTGGCTACCACTCTGAATCCGATACCGCTTC------------------------TCTTAGACCTCAGAG--ACAAAAAAAGGGAAGGGTGtctcatcccatcccctttcctcctctcctccctctcctGAGCCTTAGCCATGGCCGAGGCAGGGGCTGGGCTGAGCGAGACCGTC---------------ACTGAGACAACGGTTACCGTGACAACCGAGCCCGTGAGAAAGGC-------GGG--GGGGC
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29563494 222 -  71996105 AA-AAAAGAAGGTGGAGGATTCTGGCTACCACTCTGAATCCGATACCGCTTC------------------------TCTTAGACCTCAGAG--ACAGAAAAAGGGAAGGGTGtctcatcccatcccctttcctcctctcctccctctcctGAGCCTTAGCCATGGCCGAGGCAGGGGCTGGGCTGAGCGAGACCGTC---------------ACTGAGACAACGGTTACCGTGACAACCGAGCCCGTGAGAAAGGC-------GGG--GGGGC
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1     247297 222 -    735854 AA-AAAAGAAGGTGGAGGATTCTGGCTACCACTCTGAATCCGATACCGCTTC------------------------TCTTAGACCTCAGAG--ACAGAAAAAGGGAAGGGTGTctcatcccatcctctttcctcctctcctccctctcctGAGCCTTAGCCATGGCCGAGGCAGGGGCTGGGCTGAGCGAGACCGTC---------------ACTGAGACAACGGTTACCGTGACAACCGAGCCCGTGAGAAAGGC-------GGG--GGGGC
i manLeu1.NW_012107142v1   I 1 C 0
s calJac3.chr4             30374038 216 + 171630274 AA-AAAAGAAGGTGGAGGATCCTGGCTACCACTCTGAATCCGATACCGCTTC------------------------TCTTAGACCTCAGAG--ACAGAAAAAGGGAAGGGTGTCTTATCCC-----CCTTCCTCCTCTCATCCCTCTCCTGAGCCTTAGCCATGGCCGAGGCAGGGGCTGGGCTGAGCGAGACCGTC---------------ACTGAGACAACGGTTACCGTGACAACCGAGCCCGTGAGAAAGGC-------GGG--GGGC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           197372 217 +    515838 GATAAAAGAAGGTGGAGGATCCTGACTACCAGTCCGAATCCGATACCGCTTC------------------------TCTTAGACCTCAGAG--ACAGAAAAAGGGAAGGGTGTCTCATCCG-----CCTTCCTCCTCTCGTCCCTCTCGTGAGCCTTAGCCATGGCCGAGGCAGGGGCTGGGCTGAGCGAGACCGTC---------------ACTGAGACAACGGTTACCGTGACAACCGAGCCCGTGAGAAAGGC-------GGG--GGGC-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     829508 216 -   1771730 AA-AAAAGAAGGTGGAGGTTCCTGGCTACCACTCTGAATCCGATACCGCTTC------------------------TCTTAGACCTCAGAG--ACAGAAAAAGGGAAGGGTGTCTCATCCT-----CCTTCCTCCTCTCATCCCTCTTCTGAGCCTTAGCCATGGCCGAGGCAGGGGCTGGGCTGAGCGAGACCGTC---------------ACTGAGACAACGGTTACCGTGACAACCGAGCCCGTGAGAAAGGC-------GGG--GGGC-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     315304 216 -    383796 AA-AAAAGAAGGTGGAGGATCCCGGCTACCACTCTGAATCCTATACCGCTTC------------------------TCTTAGACTTCAGAG--ACAGAAAAAGGGAAGGCTGTCTCATCCC-----CCTTCCTCCTCTCGTCCTTCTCCTGAGCCTTAGCCATGGCCGAGGCAGGGGCTGGGCTGAGCGAGACCGTC---------------ACTGAGACAACGGTTACCGTGACAACCGAGCCCGTGAGAAAGGC-------GGG--GGGC-
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               294319 220 + 123392446 -A-AAAAGAAGGCAGAGGATCCTGGCTACCACTCTGAAACCTATACCGCTTC------------------------TGTTAGACCTCAGAGACACAACAAAAGGGAAGGAGGTctcatcc------tcttcctcccctcctccCT---CTCAGCCTTAGCCATGGCCGAGGCAGGGACCGGGCTGAGTGAGACCGTC---------------ACTGAGACAACGGTTACCGTGACAACCGAGCCCGTGAGAAAGGCGGGGGTGGGG--GGGC-
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      98327 223 -   1411461 -A-AAAAGAAGGCAAAGGATCCTGGCTACTACTCTGAATCCTATACCTCTTC------------------------TCTTAGACCTCAGAGACACAGGAAAAGGGAAGGAGGTCTCATCC------TCTTCCTCCCCTCCTCCCTCTCCTCAGCCTTAGCCATGGCCGAGGCAGGGGCCGGGCTGAGTGAGACCGTC---------------ACTGAGACAACGGTTACCGTGACAACCGAGCCCGTGAGAAAGGCGGGGGTGGGG--GGGC-
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           245444 207 +  18854210 -A-AAGAGAAGGCGGAAGATCCTGGCTGCTACTC---------TACCGCTTG------------------------TCTTAGACCTCAGAGACACAGAAAAAGGGAAGGGTGTCTCATCC------CCTTCCTCCTCTCCTCTCTCTCCTCAGCCTTAGCCATGGCCGAGGCAGGGGCCGGGCTGAGTGAGACCGTC---------------ACTGAGACAACGGTTACCGTGACAACCGAGCCCGTGAGAAAGGC-------TGG--GGGT-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58035645 223 -  94987271 GA-TTAAGAAGCTAGAGCATCCTGGCCTCTACTCCGAGTCTTGTACCGGTTC------------------------TCTTAGATCTCTGAGGCTCAGAAAAAGGAAAGGGTGTCTCATCCCG----CTTTCTCGCTTTTC------------GCTTTAGCCATGGCGGAGACAGGGGCCGGGATAAGTGAGACCGTCACTGAGACAACGGTTACTGAGACAACGGTTACCGAGACAACCGAGCCAGTGAGAAAGGC-------GGGCAGGG--
i mm10.chr17               I 3 C 0
s canFam3.chr35            26289521 233 +  26524999 ---CCGAGGCGCTGGAGGGTCCTGGCTGCTCCTCCGAATccgatcccgatcccgatcccgatcccggtcccgGTCGTCTTAGAGCTCGGAG--ACACC----GGGAAGGCCGCTTCCTGCC-----CCGCCGCCCTCT--GCCCTCTCCGCAGCCTCAGCCATGGCCGAGGCAGGAGCCGGGCTGAGTGAGACCGTC---------------ACGGAGACCACCGTTACCGTGACAACTGAGCCCGTGAGAAAGGC-------GGG--GGACG
i canFam3.chr35            C 0 I 2
s dasNov3.JH569887            20355 214 -     22419 -A-GAAAGAAGGCGGAGGATTCTGGCTACTATTCTGAATCCGATTCCGATTC------------------------TCTTAGACCCCAGAGACGCAGAAAGAGGGCAGGGTGTCTCGTCCC-----GCTTCCTCCCTTCCTCCCTCTC---AGCCTTAGCCATGGCTGAGGCAGGGGCTGGGCTGAGCGAGACCGTC---------------ACCGAGACTACGGTTACCGTGACAACTGAGCCCGTGAGAAAGGC-------GGG--GGGC-
i dasNov3.JH569887         C 0 C 0
e colAng1.NW_012115577v1     201599 205 -   1829203 M

a score=2569813.000000
s hg38.chr6_GL000254v2_alt  1411588 168 +   4827813 GGTGCTGTTT-AGGGGTCTGGGAGATACTGGGAGGGAGGGGACAGGGATTAG-AA-GAGTTGTTGGAGGAGCTAGGCCTAGGGATATGGGA---GGTGTGGGGTTGAATATCTAGGGCTGGGAGAATCGGAAGGTAT----TGGAGCTATTTGGAGTGGCAGAGATGGTGCAGGAGGC
s panTro5.chr6             30284853 168 + 175400573 GGTGCTGTTT-AGGGGTCTGGGAGATACTGGGAGGGAGGGGACAGGGATTAG-AA-GAGTTGTTGGAGGAGCTGGGCCTAGGGATATGGGA---GGTGTGGGGTTGAATATCTAGGGCTGGGAGAATCGGAAGGTAT----TGGAGCTATTTGGAGTGGCAGAGATGGTGCAGGAGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30515549 168 + 173848474 GGTGCTGTTT-AGGGGTCTGGGAGATACTGGGAGGGAGGAGACAGGGATTAG-AA-GAGTTGTTGGAGGAGCTGGGCCTAGGGGTATGGGA---GGTGTGGGGTTGAATATCTAGGGCTGGGAGAATCGGAAGGTAT----TGGAGCTATTTGGAGTGGCAGAGATGGTGCAGGAGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     222437 168 +   2037526 GGTGCTGTTT-AGGGGTCTGGGAGATACTGGGAGGGAGGGGACAGGGATTAG-AA-GAGTTGTTGGAGGAGCTGGGCCTAGGGATATGGGA---GGTGTGGGGTTGAATATCTAGGGCTCGGAGAATCGGAAGGTAT----TGGAGCTATTTGGAGTGGCAGAGATGGTGCAGGAGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74895455 166 + 122973662 GGTGATGTTTAAGGGGTCTGGGAGATACTGGGAGGGAGGGGACAGGAATTAG-AA-GA---GTTGGAGGAGCTGGGCCTGGGGATATGGGA---GGTGTGGGGTTGAGTATCTAGGGCTGGGAGAATCGGAAGGTAT----TGGAGCTATTTGGAGTGGCAGAGATGGTGCAGGAGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30769299 168 + 172585720 GGTGCTGTTT-AGGGGTCTGGGAGATACTGGGAGGGAGGGGACAGGGATTAG-AA-GAGTTGTTGGAGGAACTGGGCCTGGGAATATGGGA---GGTGTGGGGTTGAATATCTAGGGCTGGGAGAATCGGAAGGTAT----TGGAGCTATTTAGAGTGGCAGAGATGGTGCAGGAGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30064436 168 - 170955103 GGTGCTGTTT-AGGGGTCTGGGAGATACTGGGAGGGAGGGGACAGGGATTAG-AA-GAGTTGTTGGAGGAACTGGGCCTGGGAATATGGGA---GGTGTGGGGTTGAATATCTAGGGCTGGGAGAATCGGAAGGTAT----TGGAGCTATTTAGAGTGGCAGAGATGGTGCAGGAGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     313746 168 +   1495729 GGTGCTGTTT-AGGGGTCTGGGAGATACTGGGAGGGAGGGGACAGGGATTAG-AA-GAGTTGTTGGAGGAACTGGGCCTGGGAATATGGGA---GGTGTGGGGTTGAATATCTAGGGCTGGGAGAATCGGAAGGTAT----TGGAGCTATTTAGAGTGGCAGAGATGGTGCAGGAGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     411622 168 -    863181 GGTGCTGTTT-AGGGGTCTGGGAGATACTGGGAGGGAGGGGACAGGGATTAG-AA-GAGTTGTTGGAGGAACTGGGCCTGGGAATATGGGA---GGTGTGGGGTTGAATATCTAGGGCTGGGAGAATCGGAAGGTAT----TGGAGCTATTTAGAGTGGCAGAGATGGTGCAGGAGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29563716 168 -  71996105 GGTGCTGTTT-AGGGGTCTGGGAGATACTGGGAGGGAGGGGACAGGGATTAG-AA-GAGTTGTTGGAAGAACTGGGCCTGGGAATATGGGA---GGTGTGGGGTTGAATATCTAGGTCTGGGAGAATCGGAAGGTAT----TGGAGCTATTTAGAGTGGCAGAGATGGTGCAGGAGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     247519 168 -    735854 GGTGCTGTTT-AGGGGTCTGGGAGATACTGGGAGGGAGGGGACAGGGATTAG-AA-GAGTTGTTGGAGGAACTGGGCCTGGGAATATGGGA---GGTGTGGGGTTGAATATCTAGGGCTGGGAGAATCGGAAGGTAT----TGGAGCTATTTAGAGTGGCAGAGATGGTGCAGGAGGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     201805 168 -   1829203 GGTGCTGTTT-AGGGGTCTGGGAGATACTGGGAGGGAGGGGACAGGGATTAG-AA-GAGTTGTTGGAGGAACTGGGCCCGGGGATATGGGA---GGTGTGGGGTTGAATATCTAGGGCTGGGAGAATCGGAAGGTAT----TGGAGCTATTTAGAGTGGCAGAGATGGTGCAGGAGGC
i colAng1.NW_012115577v1   M 205 C 0
s calJac3.chr4             30374254 167 + 171630274 GGTGCTG-TT-AGGGGTCTGGGAGATACTGGGAGGGAGGGGACAGGGCTGAG-AA-GAGTTGCTGGAGGAGCTGGGCCTGGGGATATGGGA---GGTGTGGGGTTGGGTATCTGGGGCTGGGAGAATCGGAAGGTAT----TGGAGCTATTTGGAGTGGCAGAGATGGTGCAGGAGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           197589 168 +    515838 GGTGCTGTTT-AGGGGTCTGGGAGATGCTGGGAGGGAGGGGACAGGGATGAG-AA-GAGTTGCTGGAGGAGCTGGGCCTGGGGATATGGGA---GGTGTGGGGTTGGATATCTGGGGCTGGGAGAATCGGAAGGTAT----TGGAGCTCTTTGGAGTGGCAGAGGTGGTGCAGGAGGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     829724 168 -   1771730 GGTGCTGTTT-AGGGGTCTGGGAGATACTGGGAGGGAGGGGACAGGGATGAG-AA-GAGTTGCTGGAGTAGCTGGGCCTGGGGATATGGGA---GGTGTATGGTTGGATATCTGGGGCTGGGAGAATCGGAAGGTAT----TGGAGCTGTTTGGAGTGGCAGAGGTGGTGCAGGAGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     315520 168 -    383796 GGTGCTGTTT-AGGGGTCTGGGAGATACTGGGAGGGAGGGGACAGGGATGAG-AA-GAGTTGCTGGAGGAGCTGGGCCTGGGGATATGGGA---GGTGTGGGGTTGAATATCTGGGGCTGGGAGAATCGGAAGGTAT----TGGAGCTATTTGCAGTGGCAGAGATGGTGCAGGAAGC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               294539 166 + 123392446 GGTGCTGCTT-AGGGGTCTGGGAGATGCCGAGAGGGAGGGGACTGGGCTTAG-GA-GAGTTGCTGGCGCGGCTGGGCCTGGAAATATGGGA---AGTGTGGTGTTGA--ATCTCGGGCTGGGAGAATCTCAAGGTAT----TGGAGCAATTCAGAGTGGCAGTGATGGTGCAGGAGAC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      98550 168 -   1411461 GGTGCTGCTT-AGGGGTCTGGGAGATGCCGAGAGGGAGGGGACAGGGCTTAG-CA-GAGTTGCTGGGGCGGCTGGGCCTGGGAATATGGGA---GGTGTGATGTTGACTATCTGGGGCTGGGAGAATCTCAAGGTAT----TGGAGCAAGTTAGAGTGGCAGTGATGGTGCCGGCGAC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           245651 166 +  18854210 GGTGCTGTTT-AGGGGTCTGGGAGTTACTGGGAGGGAGGGCACAGGGTTTAG-GA-GAGTTACTGGAGGGTCTGGGCCTGGGGATATGGGA---GATGTGTGGTTGA--ATATCGGGCTGGAAGAATGACAAGGTAT----TGGAGCAGTTTGGTGTAGCAGTGATGGTTCAGGCGAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58035868 157 -  94987271 GGT-CTATTT-AGGGGTCTGGGAGGCACTGGGAGGGGGAGG---GGGGTTTG-GA-AAGTTGGTGGG----------TTTGGGATCTGGGACATCATGTGGGGTTTACTCTT----ATTGGGAAAATCGCAAGGAACTAAATAGAGATGCTTGGAGCCGCTCAAATGGTTCAAGTGAC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26289756 123 +  26524999 ------------GGCGCCCG-------Cggcggggacggggacggggacggg-ggcgggccgggggcgggggcggggtcagggctgcggag---ggggcgg------------------gcgagggggggggcgTGC----TGGGGACTCT----------GAGCTGGCGCGGGAGCC
i canFam3.chr35            I 2 I 282
s dasNov3.JH569887            20569 163 -     22419 GGCGCGGTGT-AGGGGTCTGGGGGCTGTCGGGAGGGAGGGGATAAAGCTTTGTGA-GGGTTGCTCCAGGGACT-GCCCTGGGAGTTGGGGA------GTAGGGTTCGAGGTCTGGAGTTGGGAGAATCGCGAGGGAT----TGAGGATGTTTGGAGTGACAGAAA--GTGCAGGAGGG
i dasNov3.JH569887         C 0 C 0

a score=6494688.000000
s hg38.chr6_GL000254v2_alt  1411756 499 +   4827813 AGGTCAAGGAACTTGTAATAGGGAGGTACAGTTAGGATATAGGTGT-TGCTGCTTGGGGTGG----TTATGTGTGTAAGTAATAAACGAAAGGGAAATTGAGGATTAAGGAGCCAGGAAGATGTTGGGAGGAAATCAAAG----------------GTAGTGTAAGA--AAGCATGG--TTGGAGGCCAACTTATCAA---------T-ATTATC-----AATATTGATATTCGAATAAATATTTATTGAATGGATGAATGTAAA-----AGGAAGTGGCAGGAATGAGGAAACA-------------------------------AGAAAAGGAGATGAAAAGAGGTATTTTGAGAAATCAGA------------GAGCAAAGATGTA---------------A-ATG----------GAGAAACAAGAAGTATT-------TATCCAAAAAC------ATGTTAAGTTGCCTTCAAAGGGAGAAGGTT-----GCATTGGGCTT----------------------AAT-ACTC-TTGGATTAAAGGAAG-------------------------------------------------------------------------------------------------TTTAGTAATTAATAGATTAGTAATAC-------TTGCTACTAGAGATGCCAGGAT---------------GCCAGAGAATAG--------------------------------------------------------GTGGATAAGAGGTAGGGAGGGCTG---------------------GAGCTTGAGAATGAGAG------------------------------------AG
s panTro5.chr6             30285021 503 + 175400573 AGGTCAAGGAACTTGTAATAGGGAGGTACAGTTAGGATATAGGTGT-TGCTGCTTGGGGTGGGTGGTTATGTGTGTAAGTAATAAACGAAAGGGAAAGTGAGGATTAAGGAGCCAGGAAGATGTTGGGAGGAAATCAAAG----------------GTAGTGTAAGA--AAGCATGG--TTGGAGGCCAACTTATCAA---------T-ATTATC-----AATATTGATATTCGAATAAATATTTATTGAATGGATGAATGTAAA-----AGGAAGTGGCAGGAATGAGGAAACA-------------------------------AGAAAAGGAGATGAAAAGAGGTATTTTGAGAAATCAGA------------GAGCAAAGATGTA---------------A-ATG----------GAGAAACAAGAAGTATT-------TATCCAAAAAC------ATGTTAAGTTGCCTTCAAAGGGAGAAGGTT-----GCATTGGGCTT----------------------AAT-ACTC-TTGGATTAAAGGAAG-------------------------------------------------------------------------------------------------TTTAGTAATTAATAGATTAGTAATAC-------TTGCTACTAGAGATGCCAGGAT---------------GCCAGAGAATAG--------------------------------------------------------GTGGATAAGAGGTAGAGAGGCCTG---------------------GAGCTTGAGAATGAGAG------------------------------------AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30515717 503 + 173848474 AGGTCAAGGAACTTGTAATAGGGAGGTACAGTTAGGATATAGGTGT-TGCTGCTTGGGGTGGGTGGTTATGTGTGTAAGTAATAAGCGAAAGGGAAAGTGAGGATTAAGGAGCCAGGAAGATGTTGGGAGGAAATCAAAG----------------GTAGTGTAAGA--AAGCATGG--TTGGAGGCCAACTTATCAA---------T-ATTATC-----AATATTGATATTCGAATAAATATTTATTGAATGGATGAATGTAAA-----AGGAAGTGGCAGGAATGAGGAAACA-------------------------------AGAAAAGGAGATGAAAAGAGGTATTTTGAGAAATCAGA------------GAGCAAAGATGTA---------------A-ATG----------GAGAAACAAGAAGTATT-------TATCCAAAAAC------ATGTTAAGTTGCCTTCAAAGGGAGAAGGTT-----GCATTGGGCTT----------------------AAT-ACTC-TTGGATTAAAGGAAG-------------------------------------------------------------------------------------------------TTTAGTAATTAATAGATTAGTAATAC-------TTGCTACTAGAGATGCCAGGAT---------------GCCAGAGAATAG--------------------------------------------------------GTGGATAAGAGGTAGAGAGGGCTG---------------------GAGCTTGAGAATGAGAG------------------------------------AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     222605 499 +   2037526 AGGTCAAGGAACTTGTAATAGGGAGGTACAGTTAGGATATAGGTGT-TGCTGCTTGGGGTGG----TTATGTGTGTAAGTAATAAACGAAAGGGAAATTGAGGATTAAGGAGCCAGGAAGATGTTGGGAGGAAATCAAAG----------------GTAGTGTAAGA--AAGCATGG--TTGGAGGCCAACTTATCAA---------T-ATTATC-----AATATTGATATTCGAATAAATATTTATTGAATGGATGAATGTAAA-----AGGAAGTGGCAGAAATGAGGAAACA-------------------------------AGAAAAGGAGATGAAAAGAGGTATTTTGAGAAATCAGA------------GAGCAAAGATGTA---------------A-ATG----------GAGAAACAAGAAGTATT-------TATCCAAAAAC------ATGTTAAGTTGCCTTCAAAGGGAGAAGGTT-----GCATTGGGCTT----------------------AAT-ACTC-TTGGATTAAAGGAAG-------------------------------------------------------------------------------------------------TTTGGTAATTAATAGATTAGTAATAC-------TTGCTACTAGAGATGCCAGGAT---------------GCCAGAGAATAG--------------------------------------------------------GTGGATAAGAGGTAGAGAGGGCTG---------------------GAGCTTGAGAATGAGAG------------------------------------AG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74895621 499 + 122973662 AGGTCAAGGAACTTGTAATAGGAAGGTACAGTTAGGATATAGGTGT-TGCTGCTTGGGGTGG----TTATGTGTGTAAGTAATAAACGAAAGGGAAATTGAGGATTAAAGAGCCAGGAAGATGTTGGGAGGAAATCAAAG----------------GTAGTGTAAGA--AAGCATGG--TTGGAGGCCAACTTATCAA---------T-ATTATC-----AATACTGATATTCGAATAAATATTTATTCAATAGATGAATGTAAA-----AGGAAGTGACAGGAAAGAGGAAACA-------------------------------AGAAAAGGAGATGAAAAGAGGTATTTTGAGAAATCAGA------------GAGCAAAGATGTA---------------A-ATG----------GAGAAACAAGAAGTATT-------TATCCAAAAAC------ATGTTAAGTTGCCTTCAAAGGGAGAAGGTT-----GCACTGGGCTT----------------------AAT-ACTC-TTGGATTAAAGGGAG-------------------------------------------------------------------------------------------------TTTAGTAATTAATAGATTAGTAATAC-------TTGCTACTAGAGATGCCAGGAT---------------GCCAGAGAATAG--------------------------------------------------------GTGGATAAGAGGTAGAGAGGGCTG---------------------GAGCTTGAGAATGAGAA------------------------------------AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30769467 499 + 172585720 TGGTCAAGGATCATGTAATAGGGAGGTACAGTTAGGATATAGGTGT-TGCTGCTTGGGGTGG----TTATGTGTATAAGTAATGAACGAATGGGAAATTGAGGATAAAGGAGCCAGGAAGATGTTGGGAGGAAGTCAAAG----------------GTAGTGTAAGA--AAGCATGG--TTGGAGGCCAACTTATCAA---------T-ATTATC-----CATGCTTATATTTAAATAAATATTTATTGAATGGATGAATGTAAA-----AGGAAGTAGCAGGAATGAGGAAACA-------------------------------AGGAAAGGAGATGAAAAGAGGCATTTTGAGAAATCAGA------------GAGCAAAGATGTA---------------A-ATG----------GAGAAACAAGAAGTATT-------TTTCCAAAAAC------ATGTTAAGTTGCCTTCAAAGGGAGAAGATT-----GTGTTGGGCTT----------------------AAT-ACTC-TTGGATTAAAGGAAG-------------------------------------------------------------------------------------------------CTTGGTAATTAATAGATTAATAATAC-------TTGCTACTAGAGAAGCCAGGAT---------------GCCAGAGAATAG--------------------------------------------------------GTGGATAAGAGGTAGAGAGAGCTG---------------------GAGCTTGAGAATGAGAG------------------------------------AG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30064604 499 - 170955103 TGGTCAAGGATCATGTAATAGGGAGGTACAGTTAGGATATAGGTGT-TGCTGCTTGGGGTGG----TTATGTGTATAAGTAATGAACGAATGGGAAATTGAGGATTAAGGAGCCAGGAAGATGTTGGGAGGAAGTCAAAG----------------GTAGTGTAAGA--AAGCATGG--TTGGAGGCCAACTTATCAA---------T-ATTATC-----AATGCTTATATTTAAATAAATATTTATTGAATGGATGAATGTAAA-----AGGAAGTAGCAGGAATGAGGAAACA-------------------------------AGGAAAGGAGATGAAAAGAGGCATTTTGAGAAATCAGA------------GAGCAAAGATGTA---------------A-ATG----------GAGAAACAAGAAGTATT-------TTTCCAAAAAC------ATGTTAAGTTGCCTTCAAAGGGAGAAGATT-----GTGTTGGGCTT----------------------AAT-ACTC-TTGGATTAAAGGAAG-------------------------------------------------------------------------------------------------CTTGGTAATTAATAGATTAATAATAC-------TTGCTACTAGAGAAGCCAGGAT---------------GCCAGAGAATAG--------------------------------------------------------GTGGATAAGAGGTAGAGAGAGCTG---------------------GAGCTTGAGAATGAGAG------------------------------------AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     313914 499 +   1495729 TGGTCAAGGATCATGTAATAGGGAGGTACAGTTAGGATATAGGTGT-TGCTGCTTGGGGTGG----TTATGTGTATAAGTAATGAACGAATGGGAAATTGAGGATTAAGGAGCCAGGAAGATGTTGGGAGGAAGTCAAAG----------------GTAGTGTAAGA--AAGCATGG--TTGGAGGCCAACTTATCAA---------T-ATTATC-----AATGCTTATATTTAAATAAATATTTATTGAATGGATGAATGTAAA-----AGGAAGTAGCAGGAATGAGGAAACA-------------------------------AGGAAAGGAGATGAAAAGAGGCATTTTGAGAAATCAGA------------GAGCAAAGATGTA---------------A-ATG----------GAGAAACAAGAAGTATT-------TTTCCAAAAAC------ATGTTAAGTTGCCTTCAAAGGGAGAAGATT-----GTGTTGGGCTT----------------------AAT-ACTC-TTGGATTAAAGGAAG-------------------------------------------------------------------------------------------------CTTGGTAATTAATAGATTAATAATAC-------TTGCTACTAGAGAAGCCAGGAT---------------GCCAGAGAATAG--------------------------------------------------------GTGGATAAGAGGTAGAGAGAGCTG---------------------GAGCTTGAGAATGAGAG------------------------------------AG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     411790 499 -    863181 TGGTCAAGGATCATGTAATAGGGAGGTACAGTTAGGATATAGGTGT-TGCTGCTTGGGGTGG----TTATGTGTATAAGTAATGAACGAACGGGAAATTGAGGATTAAGGAGCCAGGAAGATGTTGGGAGGAAGTCAAAG----------------GTAGTGTAAGA--AAGCATGG--TTGGAGGCCAACTTATCAA---------T-ATTATC-----CATGCTTATATTTAAATAAATATTTATTGAATGGATGAATGTAAA-----AGGAAGTAGCAGGAATGAGGAAACA-------------------------------AGAAAAGGAGATGAAAAGAGGCATTTTGAGAAATCAGA------------GAGCAAAGATGTA---------------A-ATG----------GAGAAACAAGAAGTATT-------TTTCCAAAAAC------ATGTTAAGTTGCCTTCAAAGGGAGAAGATT-----GTGTTGGGCTT----------------------AAT-ACTC-TTGGATTAAAGGGAG-------------------------------------------------------------------------------------------------CTTGGTAATTAATAGATTAATAATAC-------TTGCTACTAGAGATGCCAGGAT---------------GCCAGAGAATAG--------------------------------------------------------GTGGATAAGAGGTAGAGAGAGCTG---------------------GAGCTTGAGAATGAGAG------------------------------------AG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29563884 499 -  71996105 TGGTCAAGGATCATGTAATAGGGAGGTACAGTTAGGATATAGGTGT-TGCTGCTTGGGGTGG----TTATGTGTATAAGTAATGAACGAATGGGAAATTGAGGATTAAGGAGCCAGGAAGATGTTGGGAGGAAGTCAAAG----------------GTAGTGTAAGA--AAGCATGG--TTGGAGGCCAACTTATCAA---------T-ATTATC-----AGTGCTTATATTTAAATAAATATTTATTGAATGGTTGAATGTAAA-----AGGAAGTGGCAGGAATGAGGAAAGA-------------------------------AGAAAAGGAGATGAAAAGAGGCATTCTGAGAAATCAGA------------GAGCTAAGATGTA---------------A-ATG----------GAGAAACAATAAGTATT-------TTTCCAAAAAC------ATGTTAAGTTGCCTTCAAAGGGAGAAGATT-----GTGTTGGGCTT----------------------AAT-ACTC-TTGGATTAAAGGGAG-------------------------------------------------------------------------------------------------CTTGGTAATTAATAGATTAATAATAC-------TTGCTACTAGAGATGCCAGGAT---------------GCCAGACAATAG--------------------------------------------------------GTGGATAAGAGGTAGAGAGAGCTG---------------------GAGCTTGAGAATGAGAG------------------------------------AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     247687 499 -    735854 TGGTCAAGGATCATGTAATAGGGAGGTACAGTTAGGATATAGGTGT-TGCTGCTTGGGGTGG----TTATGTGTATAAGTAATGAACGAATGGGAAATTGAGGATTAAGGAGCCAGGAAGATGTTGGGAGGAAGTCAAAG----------------GTAGTGTAAGA--AAGCATGG--TTGGAGGCCAACTTATCAA---------T-ATTATC-----CATGCTTATATTTAAATAAATATTTATTGAATGGATGAATGTAAA-----AGGAAGTAGCAGGAATGAGGAAACA-------------------------------AGAAAAGGAGATGAAAAGAGGCATTTTGAGAAATCAGA------------GAGCAAAGATGTA---------------A-ATG----------GAGAAACAAGAAGTATT-------TTTCCAAAAAC------ATGTTAAGTTGCCTTCAAAGGGAGAAGATT-----GTGTTGGGCTT----------------------AAT-ACTC-TTGGATTAAAGGGAG-------------------------------------------------------------------------------------------------CTTGGTAATTAATAGATTAATAATAC-------TTGCTACTAGAGATGCCAGGAT---------------GCCAGAGAATAG--------------------------------------------------------GTGGATAAGAGGTAGAGAGAGCTG---------------------GAGCTTGAGAATGAGAG------------------------------------AG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     201973 499 -   1829203 TGGTCAAGGATCATGTAATAGGGAGGTACAGTTAGGATATAGGTGT-TGCTGCTTGGGGTGG----TTATGTGTATAAGTAATGAACGAATGGGAAATTGAGGATTAAGGAGCCAGGAAGATGTTTGGAGGAAGTCAAAG----------------GTAGTGTAAGA--AAGCATGG--TTGGAGACCAACTTATCAA---------T-ATTATC-----AATGCTTATATTTAAGTAAATATTTATTGAATGGATGAATGTAAA-----AGGAAGTGGCAGGAATGAGGAAACA-------------------------------AGAAAAGGAGATGAAAAGAGGCATTTTGAGAAATCAGA------------GAGCAAAACTGTA---------------A-ATG----------GAGAAGCAAGAAGTATT-------TTTCCAAAAAC------ATGTTAAGTTGCCTTCAAAGGGGGAAGATT-----GCATTGGGCTT----------------------AAT-ACTT-TTGGATTAAAGGGAG-------------------------------------------------------------------------------------------------CTTGGTAATTAATAGATTAGTAATAC-------TTGCTACTAGAGATGCCAGGAT---------------GTCAGAGAATAG--------------------------------------------------------GTGGATAAGAGGTAGAGAGAGCTG---------------------GAGCTTGAGAATGAGAG------------------------------------AG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30374421 493 + 171630274 TGATCAAGAGAC--GTAATAGGGAGGTACAGTAAGGATATGGATGTATGCTGCTTG----GG----TTATGTGTATAAGTAATGAACGAATGGGAAATTGAGGATTAAGGAGCCAGGAAGATGTTGGGAGGAAATCAAAG----------------GTCGTGTAAGA--TAGCACAG--TTGAAGGCCAACTTATCAA---------T-ATTATC-----AATACTTAT-----CATAAATATTTGTTGAATGGATGAATGTAAA-----AGGAAGTGACAGGAATGAGGAAACA-------------------------------AGAAAATTAGATGAAAACAGGCATTTTGAGAAATCAGA------------GAGCAAAGATGTA---------------A-ATG----------GAGAAACAAGAAGTATT-------TTTCCAAAAAC------ATGTTAAGTTTCCTTCAAAGGGAGAAGGTT-----GCATTGGGCTT----------------------AAT-ACTC-TTGGATTAAAGGGAG-------------------------------------------------------------------------------------------------TTTAGTAATTAATAGATTAGTAATAC-------TTGCTACTAGAGATGCCAGGAT---------------GCAAGGGAATGG--------------------------------------------------------GCGGATAAGAGGTAAGGAGGGCTG---------------------GAGCTTGAGAATGAGAg--------------------------------ttgttg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           197757 521 +    515838 TGGTCAAGAGACATGTAATAGGGAGGTACAGTTAGGATATGGATGTACGCTGCTTGGGGTGG----TTATGTGTGTAAGTAATGAACGAATGGGAAATTGAGGGTTAAGGAGCCAGGAAGATGTTGGGAGGAAATCAAAG----------------GTAGTGTAAGA--TAACATGG--TTGGAGGCCAAC-------------------TTATG-----AATACTTAT-----CATAAATGTTTGTTGAATGGATGAATGTAAA-----AGGAAGT-ACAGGAATGAGGAAACA-------------------------------GGAAAAGGAGATGAAAACAGGAATTTTGAGAAATCGGA------------GAGCAAAGATGTA---------------A-ATG----------GAGAAACAAGAAGTATT-------TTTCCAAAAAC------ATGTTAAGTTGCCTTCAAAGGGAGAAGGTT-----GCATTGGGCTT----------------------AAT-ACTC-TTGGATTAAAGGGAG-------------------------------------------------------------------------------------------------TTTATTAATTAATAGATTAGTAATAC-------TCACTACTAGAGATGCCAGGAT---------------GCAAGGGAATAG--------------------------------------------------------GTGGATAAGAGGTAGAGAGGGCTG---------------------GAGCTTGAGAATAAGAGTCttttttttttttttttttttttgtttgttttttttt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     829892 487 -   1771730 TGGTCAAGAGACATGTAATAGGGAGGTACAGTTAGGATATGGATGTATGCCGCTTG-GGTGG----TCATGTGTATAAATAATGAACGAATGGGAAATTGAGGGTTAAGGAGCCAGGAAGATGTTGGGAGGAAATCAAAG----------------GTAGTGTAAGA--TAACATGG--TTGGAGGCCAAC-------------------TTATC-----AATACTTAT-----CATAAATATTTGTTGAATGGATGAATGTAAA-----AGGAAGTGACAGGAATGAGGAAACA-------------------------------GGGAAAGGAGATGAAAACAGGAATTTTGAGAAATCAGA------------GAGCAAAGATGTA---------------A-ATG----------GAGAAAAAAGAAACATT-------TTTCCAAAAAC------ATGTTAAGTTGCCTTCAAAGGGAGAAGGTT-----GCATTGGGCTT----------------------AAT-ACTC-TTGGATTAAAGGGAG-------------------------------------------------------------------------------------------------TTTAGTAATTAATAGATTAGTAATAC-------TCACTACTAGAGATGCCAGGAT---------------GCAAGGGAATAG--------------------------------------------------------GTGGTTAAGAGGTAGAGAGGGCTG---------------------GAGCTTGAGAATGAGAG----------------------------------TCtt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     315688 493 -    383796 TGGTCAAGAGACATGTAATAGGGAAGTACAGTTAGGATATGGATGTTTGCTCCTTGGGGTGG----TTATGTGTATAAGTAATGAACGAATGGGAAATTGAGGATTAAGGAGCTAGGAAGATGTTGGGAAGAAATCAAAG----------------GTAGTGTAAGA--TAGCGTGG--TTGGAGGCCAACTTATCAA---------T-ATTATC-----AATACTCAT-----CATAAATATTTGTTGAATGGATGAATGTAAA-----AGGAAGTGACAGGAATGAGGAAACA-------------------------------AGAAAAGGAGATGAAAACAGGCATTTTGAGAAATCAGA------------GAGCAAAGATGTA---------------A-ATG----------GAGAAACAAGAAGTATT-------TTTCCAAAACC-----AATGTTAAGTTGCCTTCAAAGGGAGAAGGTT-----GCATTGGGCTT----------------------AAT-ACTC-TTGGATTAAAGGGAG-------------------------------------------------------------------------------------------------TTTAGTAATTAATAGATTAGTAGTAC-------TCGCTACTAGAGATGCCAGGAT---------------GCAA-GGAATAG--------------------------------------------------------GTGGATAAGAGGTAGAGAGGGCTG---------------------GAACTTGAGAATGAGAG--------------------------------------
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               294705 505 + 123392446 TAGCCAAGGGACATGTAATAGGGAGTTACAGTTAGGATATAGGTAT-TGCTACTTGGCAAGG----TGGTGCGTATATGTAAGGAACGAATGGAAAATTGGGGGTTAAGAAGCGAGAAAAATGTT--GAGGAAATGCTAG----------------GCCATGTAAGA--AAGTATGG--TTGGAGGCTAGCTGGTCAA---------TAAATATT-----AATACATACC----AATAAATATTTGTTGAAAGGATGAATGTAAA-----ACGAAGTGGAGGGAATGAGGAAACA-------------------------------AAAAAAGGATATGAAAATA-ATATTTTGAAAAATCAGA------------GAGGAGAGATGTCAGAGAGGGGAGATGTA-ATG----------GAGAAACAAGTAGCATT--------TTGCAAAAAC------AGGTTAAGTTGCTTTCAAAGGCAAAAGATT-----GCATTGGGCTT----------------------AAT-AAC--CTGGATTAAGGG-AG-------------------------------------------------------------------------------------------------GTTAGTAATTAGTAGTTTAGCAATAG-------TTGTTACTAGAGATCTCAGGAT---------------GCTAGAGAATGG--------------------------------------------------------ATGGCTAACAGGTAGGGAAGACCT---------------------AGACTTGAAAATGAGAG------------------------------------AG
i micMur3.chr6             C 0 I 11
s proCoq1.NW_012149775v1      98718 490 -   1411461 TGGCCAAGGGACATGTAATAGGGAGTTACAGTTAGGATATAGGTGT-TGCTACTTCGGGAGG----TGGTGCGTGTATGCAATGAACTAATGGGAAATTGGGGATTAAGGAGCAAGAAAAGTGTT--GAGGAAATGCAAG----------------GCCATGTAAGA--AGGTATGG--TTGGAGGCCAGCTTATCAA---------TAAATATT-----AATACTTACC----AATAAATATTTGTCGAAAGGATGAATGTAAA-----AGGAAGTGGAGGGAATAAGGAAACA-------------------------------AAAATAGAAGATGAAGAGG-ATATTTTGAAAAATCAGA------------GAGGGGAGATGTA---------------A-ATG----------GAGAAACAAGTAGCATT--------TTGCAAAAAC------AGGTTAAGTTGCTTTCAAAGGGAAAAGGTT-----GCATTGGGCTT----------------------CAT-AAC--CTCGATTCAGGG-AG-------------------------------------------------------------------------------------------------TTTAGTAATTAGTAGTTTAGTAATGG-------TTGTTACGAGAGATATCAGGAT---------------GCTAGAGAATGG--------------------------------------------------------ATGGCTAAAAGGTAGGGAAGGGCT---------------------GGACTTGAAAATGAGAG------------------------------------AG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           245817 466 +  18854210 TTGTCGAGGGACA--TAATAAGCAGTTACAGTTAGGATATAAGTAT-TGCTACTTGGGGAAG-----AGTGTGTATAAGTAATAAACGAATGGGAAATTGGGGATTAAAGAGCAAGAAAAGTGTTGGGAGGAAATGCAAG----------------GCCATGTGAGA--AAGTATGG--TTGGAGGTCAGCTTATCAA---------T-ATTAGC-----AATGCTTATC----AATAAGTATTTGTTGAATGGATGAAGGT-AG-----GGGAAGTGAAGGGAATGAGGAAACA-------------------------------AGAAAAGGACATGAAGATA-AAATTTTGAAAAATC----------------AGGGGAGATATA---------------A-ATG----------AAGAAACAAGTAGCATT-------CTTGCAAAAAC------AGGTTA-----TTTTCCAAGGGAAAAAGCT-----GCACTGGGCTT----------------------AAT-AACCTCTGGATTAAGGG-----------------------------------------------------------------------------------------------------------------CGTTTAGTAATAG-------TCATTACTAGGGATATCAGGAT---------------GCTAGAGAATGT--------------------------------------------------------GTGGATAAAAGATAGGGAAGAGCT---------------------GGACTTGAGAATGAGAG------------------------------------AG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58036025 799 -  94987271 TGGTCAAGGATTGTTTAATCCGTAGTTACAATTAGAGTATAGGTGT-TAAGGCTTGGGGTGG----TGGTCTATGTACGTAATAAAC-----GGAAACT--GGGTTAAGGAGCCAGAAAGGTACTGGGAGGAAGTGAAAC----------------GCCATTTGAGA--AGGCGTGGTTTTGGAGGCAAATGTACAGAACGAGTACTT-ACCAAT-----AGTGCTTACC----AATAGATAGTCATGGAATGGGTGCGTGTTAAAGCGGAGGAAATGA-GGAAACAAGAAAATAAGGTGAAGTGTGTTTTGGCAGATCAGGGAGGAGAGAAGCAAATGAGCAAACAACTTTTGCAAAAACAAATTGCTTTCAAAGGGAGAAAGATGCG----TTGGGTTTGACA-ATGTCTGGGTTGAAGGAGATTAGTAGTTTAGCAGTTATTACCAGAGATGCCAGAATGTTAAAGAAT----AAGTGGATAGGATTAGGGAGCCCTGGGCTTGAAGATGAGAGAAGAAAGAATGAAG-GCTT-TTTTGTAGAAGGAGGGTTTTGGATATTTGTTTTATTTTGATAtgtgtgtgtgtgtgtgtgtgtgtgtAGGCCTGAAGTTAACCTCAGATGtctgagacatggtctatatttatttatttatttatttacttatgatacagagtcattgtgcctggagctggccaaataggctagtctggctagcaagagatctgcctttttgcaccaccaccaccaccacatttgactttttgttgttgtttttgttcccgtggatacaagggatcaaactcaggtcttcatgcttgcaccaaaagagctttaccaacagag------------------------------------at
i mm10.chr17               C 0 C 0
s dasNov3.JH569887            20732 492 -     22419 TGATGACGGAACTTGTAGTTAGGGGTTAGAGTTAGGCCATAGGTGA-TGCTGCTTGGAGGGG------ATGTGTATAAGTAATGAAAGAATGGGAAATTGAGGGTTCAAGAGCCAGGGAGATGC----AGGAAATAGAGGGGGAAACGGGGTGGGCGGAGTGGAAGGCCAGGTATGG--GAGGATTGGACCTGAAGCA---------T-ACTATTTGTTGAATGGATAAA----CATAAAGATTTGTTGAATGGATAAACATAAA-----GGAGCGTGGAGGGAATGCGGAAACAA------------------------------AGAAAAGGAAATGAGGATA-GTATTTTTAGAAATCAGA------------AAGGAGAGAGGAG---------------AGATG----------GAGAAACAAGTAGCATT-------TTTGTAAAAGC----AGAGATTAGGATGCTTTCAAAGGG---AGGTT-----GCATTGGGCTT----------------------AATCACCC-CTGGATTAATGG-CG-------------------------------------------------------------------------------------------------TTTGG----------------AATAA-------T---TACCAGAGATGCCAGAAT---------------GCCAGGGCATAG--------------------------------------------------------GTGAATAGGAAGCCGGAAGTGCTG---------------------G-GCTTGAGAGTGAGAG------------------------------------AG
i dasNov3.JH569887         C 0 C 0
e canFam3.chr35            26289879 282 +  26524999 I

a score=20370.000000
s hg38.chr6_GL000254v2_alt  1412255 2 +   4827813 GT
s panTro5.chr6             30285524 2 + 175400573 GT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30516220 2 + 173848474 GT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     223104 2 +   2037526 GT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74896120 2 + 122973662 GT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30769966 2 + 172585720 GT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30065103 2 - 170955103 GT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     314413 2 +   1495729 GT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     412289 2 -    863181 GT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29564383 2 -  71996105 GT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     248186 2 -    735854 GT
i manLeu1.NW_012107142v1   C 0 I 4
s colAng1.NW_012115577v1     202472 2 -   1829203 GT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30374914 2 + 171630274 tt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           198278 2 +    515838 tt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     830379 2 -   1771730 tt
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1      99208 2 -   1411461 AT
i proCoq1.NW_012149775v1   C 0 I 23
s otoGar3.GL873550           246283 2 +  18854210 GT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58036824 2 -  94987271 gt
i mm10.chr17               C 0 I 20
s dasNov3.JH569887            21224 2 -     22419 GT
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               295210 11 + 123392446 I
e canFam3.chr35            26289879 282 +  26524999 I
e aotNan1.NW_018496904v1     316181 0 -    383796 C

a score=18295.000000
s hg38.chr6_GL000254v2_alt  1412257 4 +   4827813 TTTG---
s panTro5.chr6             30285526 4 + 175400573 TTTG---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30516222 4 + 173848474 TTTG---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     223106 4 +   2037526 TTTG---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74896122 4 + 122973662 TTTG---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30769968 4 + 172585720 TTTG---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30065105 4 - 170955103 TTTG---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     314415 4 +   1495729 TTTG---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     412291 4 -    863181 TTTG---
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29564385 4 -  71996105 TTTG---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     248192 4 -    735854 TTTG---
i manLeu1.NW_012107142v1   I 4 C 0
s colAng1.NW_012115577v1     202474 4 -   1829203 TTTG---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30374916 4 + 171630274 gttg---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           198280 4 +    515838 tttt---
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     830381 4 -   1771730 tttt---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     316181 3 -    383796 -TCT---
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           246285 1 +  18854210 ---A---
i otoGar3.GL873550         C 0 I 7
s mm10.chr17               58036846 3 -  94987271 -tta---
i mm10.chr17               I 20 I 1
s dasNov3.JH569887            21226 4 -     22419 ---GAGG
i dasNov3.JH569887         C 0 C 0
e micMur3.chr6               295210 11 + 123392446 I
e proCoq1.NW_012149775v1      99210 23 -   1411461 I
e canFam3.chr35            26289879 282 +  26524999 I

a score=108938.000000
s hg38.chr6_GL000254v2_alt  1412261 13 +   4827813 -----TTTGTTTTTTTAA-
s panTro5.chr6             30285530 13 + 175400573 -----TTTGTTTTTTTAA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30516226 13 + 173848474 -----TTTGTTTTTTTAA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     223110 13 +   2037526 -----TTTGTTTTTTTAA-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74896126 13 + 122973662 -----TTTGTTTTTTTAA-
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             30769972 13 + 172585720 -----TTTGTTTGTTTAA-
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             30065109 13 - 170955103 -----TTTGTTTGTTTAA-
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     314419 13 +   1495729 -----TTTGTTTGTTTAA-
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     412295 13 -    863181 -----TTTGTTTGTTTAA-
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29564389 13 -  71996105 -----TTTGTTTGTTTAA-
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1     248196 13 -    735854 -----TTTGTTTGTTTAA-
i manLeu1.NW_012107142v1   C 0 I 1
s colAng1.NW_012115577v1     202478 13 -   1829203 -----TTTGTTTGTTTAA-
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30374920 13 + 171630274 -----ttgttgttTTTAA-
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           198284 13 +    515838 -----tttttttttttAA-
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     830385 13 -   1771730 -----ttttttttgttAA-
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496904v1     316184 13 -    383796 -----TTTTTTAAAAAAA-
i aotNan1.NW_018496904v1   C 0 I 1
s micMur3.chr6               295221 13 + 123392446 -----TGTCTTTTTTTAA-
i micMur3.chr6             I 11 I 1
s otoGar3.GL873550           246293 13 +  18854210 -----GGTCTTCTTTTAA-
i otoGar3.GL873550         I 7 I 1
s mm10.chr17               58036850 13 -  94987271 -----tttatttttttCT-
i mm10.chr17               I 1 C 0
s dasNov3.JH569887            21230 19 -     22419 ATAGAGGACTTTCTTTAGA
i dasNov3.JH569887         C 0 C 0
e proCoq1.NW_012149775v1      99210 23 -   1411461 I
e canFam3.chr35            26289879 282 +  26524999 I

a score=150436.000000
s hg38.chr6_GL000254v2_alt  1412274 13 +   4827813 GAGAAAAA--------------------------------------------------------------------------GAATA
s panTro5.chr6             30285543 13 + 175400573 GAGAAAAA--------------------------------------------------------------------------GAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30516239 13 + 173848474 GAGAAAAA--------------------------------------------------------------------------GAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     223123 12 +   2037526 GAGAAAAA---------------------------------------------------------------------------AATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74896140 13 + 122973662 GGGAAAAA--------------------------------------------------------------------------GAATA
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30769986 13 + 172585720 GGGAAAAA--------------------------------------------------------------------------GAAGA
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30065123 13 - 170955103 GGGAAAAA--------------------------------------------------------------------------GAAGA
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     314433 13 +   1495729 GGGAAAAA--------------------------------------------------------------------------GAAGA
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     412309 13 -    863181 GGGAAAAA--------------------------------------------------------------------------GAAGA
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29564403 13 -  71996105 GGGAAAAA--------------------------------------------------------------------------GAAGA
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1     248210 13 -    735854 GGGAAAAA--------------------------------------------------------------------------GAAGA
i manLeu1.NW_012107142v1   I 1 C 0
s colAng1.NW_012115577v1     202492 13 -   1829203 GGGAAAAA--------------------------------------------------------------------------GAAGA
i colAng1.NW_012115577v1   I 1 C 0
s calJac3.chr4             30374934 13 + 171630274 GGGAAAAA--------------------------------------------------------------------------GAATA
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           198298 13 +    515838 GGGAAAAA--------------------------------------------------------------------------GAATA
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     830399 13 -   1771730 GGGAAACA--------------------------------------------------------------------------GAATA
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496904v1     316198 13 -    383796 GGGAAAAA--------------------------------------------------------------------------GAATA
i aotNan1.NW_018496904v1   I 1 C 0
s micMur3.chr6               295235 13 + 123392446 Gggaaaaa--------------------------------------------------------------------------gaaca
i micMur3.chr6             I 1 C 0
s proCoq1.NW_012149775v1      99233 13 -   1411461 GGGAAAAA--------------------------------------------------------------------------GAATA
i proCoq1.NW_012149775v1   I 23 C 0
s otoGar3.GL873550           246307 13 +  18854210 GGGAAAAA--------------------------------------------------------------------------GAATA
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58036863 87 -  94987271 GAGAAAATAGCTATACCATGTTGCAGAGGCCATTTCAGTCTCCCAAGTGCTGAGATTACATACCTCAGTCTCTTTAGAACATGAATA
i mm10.chr17               C 0 C 0
s dasNov3.JH569887            21249 13 -     22419 GGGGAAAA--------------------------------------------------------------------------GAATA
i dasNov3.JH569887         C 0 C 0
e canFam3.chr35            26289879 282 +  26524999 I

a score=18597360.000000
s hg38.chr6_GL000254v2_alt  1412287 1171 +   4827813 GGGGATCTGG-AAAAAGGAAGGGAGATCAAAGATTAGGTGCTGGGGACTG--AAAAATAATTTTCATGTATTAATACTACCAAGGATGATTTGGGGAGGAAGACGGAGAAACAGCAAGGATTATATTTTCCTTTGAAGAGTTGC---TGGGACCTTTCCTAGGTTAGGAATTGTGTCTTCTCT---TATACTGGTGGT--ATAAGAACAGGAAATAATACT----TATTCCTCAAGGGACTAT-CTGAGGTAAAAGACCTGT--TCTGTTTTATCTTCT-------GTCAGCTCCTCTGGTGCTATGCC-TATGGTACTGATTGA-----GCTAAAGAAGAAAAGAGAGGAG--GTTCCCT-GGGAGGGAGTGGGAAAGGTTAGTAAGAGGGGACT-AGATAGGTATGCTCATCC------TT---AACCTTCTAGGAGAACCGGAGCCTTACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTAGAATGGACAAGTGACACTGTGGACAATGAACACATGGGCCGCCGCTCATCCAAATGTGAGTAATTGTTGGCCCGCAG--------------------TAGCCCTGG-------AGTTCTGGCTCC---------CTTCAGCATATCTTGTATCTACTCATATCCACTGGCTTTCCAGAAGCCCCC--AGATGT-TCATAGTTCTGTCACTTTTTTGGTGGTGCTGTGGTATC----------------------AGGGAAAGAGGTAGGG---AAGG-GCTAGAACTGG--------AAT-TGCCTAGGTCTGACAGCAAG---AAGTGTCAGAGGTGGGAGAAGTGGGGCTTTGAATTCGTGGCTCTCTAAGAGGACAAGAGGGGTGGG-GCCTGAGTCCC-AGAGG--GTGG-GCCTGGGGAAGCTGGATCCTGGAAGGTAGGAG------------AAAATAGGAATTTTCACTGAGTTTGAGTGGGAATGGAACTG---ACTATATATCTTACCCTTCCTCCTCTTTAACTGGGCTCCTCCC-----TCTAAATCTAGGCTGCTGTATTTATGAGAAACCTCGGGCCTTTGGCGAGAGCTCCACGGAAAGTGATGAGGAGGAAGAAGAGGGCTGTGGTCATACACACTGTGTACGTGGCCACCGCAAAGGACGGCGTCGTGCAACCCTAGGACCGACCCCCACCACCCCTCCCCAGCCTCCTGACCCTTCCCAGCCCCCTCCAGGGCCAATGCAGCACTAAATCCCTCTCTCCTCCAGCATTCCTGTGTCTGTCTGGCCCTAAATGTATCCATGTGGCTA------------------------------CTT
s panTro5.chr6             30285556 1171 + 175400573 GGGGATCTGG-AAAAAGGAAGGGAGATCAAAGATTAGGTGCTGGGGACTG--AAAAATAATTTTCATGTATTAATACTACCAAGGATGATTTGGGGAGGAAGACGGAGAAACAGCAAGGATTATATTTTCCTTTGAAGAGTTGC---TGGGACCTTTCCTAGGTTAGGAATTGTGTCTTCTCT---TATACTGGTGGT--ATAAGAACAGGAAATAATACT----TATTCCTCAAGGGACTAT-CTGAGGTAAAAGACCTGT--TCTGTTTTTTCTTCT-------GTCAGCTCCTCTGGTGCTATGTC-TATGGTATTGATTGA-----GCTAAAGAAGAAAAGAGAGGAG--GTTCCCT-GGGAGGGAGTGGGAAAGGTTAGTAAGAGGGGACT-AGATAGGTATGCTCATCC------TT---AACCTTCTAGGAGAACCGGAGCCTTACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTAGAATGGACAAGTGACACTGTGGACAATGAACACATGGGCCGCCGCTCATCAAAATGTGAGTAATTGTTGGCCCGCAG--------------------TAGCCCTGG-------AGTTCTGGCTCC---------CTTCAGCATATCTTGTATCTACTCATATCCACTGGCTTTCCAGAAGCCCCC--AGATGT-TCATAGTTCTGTCACTTTTTTGGTGGTGCTGTGGTATC----------------------AGGGAAAGAGGTAGGG---AAGG-GCTAGAACTGG--------AAT-TGCCTAGGTCTGACAGCAAG---AAGTGTCAGAGGTGGGAGAAGTGGGGCTTTGAATTCGTGGCTCTCTAAGAGGACAAGAGGGGTGGG-GCCTGAGTCCC-AGAGG--GTGG-GCCTGGGGAAGCTGGATCCTGGAAGGTAGGAG------------AAAATAGGAATTTTCACTGAGTTTGAGTGGGAATGGAACTG---ACTATATATCTTACCCTTCCTCCTCTTTAACTGGGCTCCTCCC-----TCTAAATCTAGGCTGCTGTATTTATGAGAAACCTCGGGCCTTTGGCGAGAGCTCCACGGAAAGTGATGAGGAGGAAGAAGAGGGCTGTGGTCATACACACTGTGTACGTGGCCACCGCAAAGGACGGCGTCGTGCAACCCTAGGACCGACCCCCACCACCCCTCCCCAGCCTCCTGACCCTTCCCAGCCCCCTCCAGGGCCAATGCAGCACTAAATCCCTCTCTCCTCCACCATTCCTATGTCTGTCTGGCCCTAAATGTATCCATGTGGCTA------------------------------CTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30516252 1172 + 173848474 GGGGATCTGGTAAAAAGGAAGGGAGATCAAAGATTAGGTGCTGGGGACTG--AAAAATAATTTTCATGTATTAATACTACCAAGGATGATTTGGGGAGGAAGACAGAGAAACAGCAAGGATTATATTTTCCTTTGAAGAGTAGC---TGGGACCTTTCCTAGGTTAGGAATTGTGTCTTCTCT---TATACTGGTGGT--ATAAGAACAGGAAATAATACT----TATTCCTCAAGGGACTAT-CTGAGGTAAAAGACCTGT--TCTGTTTTATCTTCT-------GTCAGCTCCTCTGGTGCTATGTC-TATGGTACTGATTGA-----GCTAAAGAAGAAAAGAGAGGAG--GTTCCCT-GGGAGGGAGTGGGAAAGGTTAGTAAGAGGGGACT-AGATAGGTATGCTCATCC------TT---AACCTTCTAGGAGAACCGGAGCCTTACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTAGAATGGACAAGTGACACTGTGGACAATGAACACATGGGCCGCCGCTCATCAAAATGTGAGTAATTGTTGGCCCGCAG--------------------TAGCCCTGG-------AGTTCTGGCTCC---------CTTCAGCATATCTTGTATCTACTCATATCCACTGGCTTTCCAGAAGCCCCC--AGATGT-TCATAGTTCTGTCACTTTTTTGGTGGTGCTGTGGTATC----------------------AGGGAAAGAGGTAGGG---AAGG-GCTAGAACTGG--------AAT-TGCCTAGGTCTGACAGCAAG---AAGTGTCAGAGGTGGGAGAAGTGGGGCTTTGAATTCGTGGCTCTCTAAGAGGACAAGAGGGGTGGG-GCCTGAGTCCC-AGAGG--GTGG-GCCTGGGGAAGCTGGATCCTGGAAGGTAGGAG------------AAAATAGGAATTTTCACTGAGTTTGAGTGGGAATGGAACTG---ACTATATATCTTACCCTTCCTCCTCTTTAACTGGGCTCCTCCC-----TCTAAATCTAGGCTGCTGTATTTATGAGAAACCTCGGGCCTTTGGCGAGAGCTCCACGGAAAGTGATGAGGAGGAAGAAGAGGGCTGTGGTCATACACACTGTGTACGTGGCCACCGCAAAGGACGGCGTCGTGCAACCCTAGGACCGACCCCCACCACCCCTCCCCAGCCTCCTGACCCTTCCCAGCCCCCTCCAGGGCCAATGCAGCACTAAATCCCTCTCTCCTCCACCATTCCTGTGTCTGTCTGGCCCTAAATGTATCCATGTGGCTA------------------------------CTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     223135 1170 +   2037526 GGGGATCTGG-AAAAAGGAAGGGAGATCAAAGATTAGGTGCTGGGGACTG--AAAAATAATTTTCATGTATTAATACTACCAAGGATGATTTGGGGAGGAAGACGGAGAAACAGCAAGGATTATATTTTCCTTTGAAGAGTGGC---TGGGACCTTTCCTAGGTTAGGAATTGTGTCTTCTCT---TATACTGGTGGT--ATAAGAACAGGAAATAATACT----TATTCCTCAAGGGACTAT-CTGAGGTAAAAGACCTGT--TCTATTTTATCTTCT-------GTCAGCTCCTCTGGTGCTATGTC-TATGGTACTGATTGA-----GCTAAAGAAGAAAAGAGAGGAG--GTTCCCT-GGGAGGGAGTGGGAAAGGTTAGTAAGAGGGGACT-AGATAGGTATGCTCATCC------TT---AACCTTCTAGGAGAACCGGAGCCTTACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTAGAATGGACAAGTGACACTGTGGACAATGAACACATGGGCCGCCGCTCATCAAAATGTGAGTAATTGTTGG-CCGCAG--------------------TAGCCCTGG-------AGTTCTGGCTCC---------CTTCAGCATATCTTGTATCTACTCATATCCACTGGCTTTCCAGAAGCCCCC--AGATGT-TCATAGTTCTGTCACTTTTTTGGTGGTGCTGTGGTATC----------------------AGGGAAAGAGGTAGGG---AAGG-GCTAGAACTGG--------AAT-TGCCTAGGTCTGACAGCAAG---AAGTGTCAGAGGTGGGAGAAGTGGGGCTTTGAATTCGTGGCTCTCTAAGACAACAAGAGGGGTGGG-GCCTGAGTCCC-AGAGG--GTGG-GCCTGGGGAAGCTGGATCCTGGAAGGTAGGAG------------AAAATAGGAATTTTCACTGAGTTTGAGTGGGAATGGAACTG---ACTATATATCTTACCCTTCCTCCTCTTTAACTGGGCTCCTCCC-----TCTAAATCTAGGCTGCTGTATTTATGAGAAACCTCGGGCCTTTGGCGAGAGCTCCACGGAAAGTGATGAGGAGGAAGAAGAGGGCTGTGGTCATACACACTGTGTACGTGGCCACCGCAAAGGACGGCGTCGTGCAACCCTAGGACCGACCCCCACCACCCCTCCCCAGCCTCCTGACCCTTCCCAGCCCCCTCCAGGGCCAATGCAGCACTAAATCCCTCTCTCCTCCACCATTCCTGTGTCTGTCTGGCCCTAAATGTATCCATGTGGCTA------------------------------CTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74896153 1171 + 122973662 GGGGATCTGG-AAAAAGGAAGGGAGATAAAAGATTAGGTGCTGGGGACTG--AAAAACAATTTTCATGTATTAATACTACCAAGGATGATTTGGGGAGGAAGCCAGAGAAACAGCAAGGATTATATTTTCCTTTGAAGAGTTGC---TGGGACCTTCTCTAGGTTAGGAATTGTGTCTTCTCT---TATACTGGTGGT--ATAAGAACAGGAAATAATACT----TATTCCTCGAGGGACTAT-CTGAGGTCAAAGACCTGT--TCTGTTTTATCTTCT-------GTCAGCTCCTCTGGTGCTATGTC-TGTGGTACTGATTGA-----GCTGAAGAAGAAAAGAGAGGAG--GTTCCCT-GGGAGGGAGTGGGAAAGGTTAGTAGGAAGGGACT-AGATAGGTATGCTCATCC------TT---AACCTTCTAGGAGAACCGGAGCCTTACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTGGAATGGACAAGTGACACTGTGGACAATGAACACATGGGCCGCCGCTCATCAAAATGTGAGTAATTGTTGGCCCGCAG--------------------TAGCCCTGG-------AGTTCTGGCTCC---------CTTCAGCATATCTTGTATCTACTCATGTCTACTGGCTTTCCAGGAGCCCCC--AGATGC-TCATAGTTCTGTCACTTTTTTGGTGGTTCTGTGGTATC----------------------AGGGAAAGAGGTAGGG---AAGA-GCTAGAACTGG--------AAT-TGCCTAGGTCTGACAGCAAG---AAGTGTCAGAGGTGGGAGAAGTGGGGCTTTGAATTCGTGGCTCTCTAAGAGGACAAGAGGGGTGGG-GCCTGAGTCCC-AGAGG--GCGG-GCCTGGGGAAGCTGGATCCTGGAAGGTAGGAG------------AAAATAGGAATTTTCGCTGAGTTTGAGTGGGAATGGAACTG---ACTATATATCTTACCCTTCCTCCTCTTTGACTGGGCTCCTCCC-----TCTAAATCCAGGCTGCTGTATTTATGAGAAACCTCGGGCCTTTGGCGAGAGCTCCACGGAAAGTGATGAGGAGGAAGAAGAGGGCTGTGGTCATACACACTGTGTACGTGGCCACCGCAAAGGACGGCGTCGTGCAACCCTAGGACCGACCCCCACCACCCCTCCCCAGCCTCCTGACCCTTCCCAGCCCCCACCAGGGCCAATGCAGCACTAAATTCCTCTCTCCTCCACCATTCCTGTGTCTGTCTGGCCCTGAATGTATCCATGTGGCTA------------------------------CTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30769999 1167 + 172585720 AGGGATCTGG-AAA----AAGGAAGATCAAAGATTAGGTGCTGGGGACTG--AAAAGTAATTTTCATGTATTAATACTACCAAGGATGATGTGGGGAGGAAGACAGAGAAACAGCGAGGATTATATTTTCCTTTGAAGAGTTGC---TGGAACCTTCCTTAGGTCAGGAATTGTGCCTTCTCT---TATACTGGTGAT--ATAAGAACAGGAAATAATACT----TATTCCTCAAGGGACTGT-CTGAGGTCAAAGACCTGT--TCTGTTTTATCTTCT-------CTCAACTCCCCTGGTGCTATGTC-TGTGGTACTGATTGA-----GCGGAAGAAGATAAGAGAGGAG--GTTCCCT-GGGAGGGAGTGGGAAAGGTTAGTAGGAGGGGACT-AGATAGGTACGCTCATCC------TT---AACCTTCTAGGAGAACCGGAGCCTTACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTGGAATGGACAAGTGACACCGTGGACAATGAACACATGGGCCGCCGCTCATCAAAATGTGAGTAATTGTTGGCCCACAG--------------------TAGCCCTGG-------AGTTCTGGCTCC---------CTTCAGCGTATCTTGTATCTGCTCATATCCACTGGCTTTCCAGAAGCCCCC--AGATGC-TCATGGTTTTGTCGCTTTTTTGGTGGTTCTGTGGTATC----------------------AGGGAAAGAGGTAGGA---AAGG-GCTAGAACTGG--------AAT-TGCCTAGGTCTGATGACAAG---AAGTATCAGAGGTGGGAGAAGTAGGGCTTTGAATTCATGGCTCTGTAAGAGGACAAGAGGAGTGGG-GCCTGAGTCCC-AGAGG--GTGG-GCCTGGGGAAGGTGGATCCTGGAACGTAGGAG------------AAAATAGGAATTTTCACTGAGTTTGAGTGGGAATGGATCTG---ACTATACATCTTACCCTTCCTCCTCTTTAACTGGGCTCCTCCC-----TCTAAATCTAGGCTGCTGTATTTATGAGAAACCTCGGGCCTTTGGCGAGAGCTCCACGGAAAGTGATGAGGAGGAAGAAGAGGGCTGTGGTCATACACACTGTGTACGTGGCCACCGCAAAGGACGGCGTCGTGCAACCCTAGGACCGACCCCCACCACCCCTCCCCAGCCTCCTGACCCTTCCCAGCCCCCACCAGGACCAATGCAGCACTAAATTCCTCTCTCCTCCACCATTCCTGTGTCTGTCTGGCCCTGAATGTATTCATGTGGCTA------------------------------CTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30065136 1167 - 170955103 AGGGATCTGG-AAA----AAGGGAGATCAAAGATTAGGTGCTGGGGACTG--AAAAGTAATTTTCATGTATTAATACTACCAAGGATGATGTGGGGAGGAAGACAGAGAAACAGCGAGGATTATATTTTCCTTTGAAGAGTTGC---TGGAACCTTCCTTAGGTCAGGAATTGTGCCTTCTCT---TATACTGGTGAT--ATAAGAACAGGAAATAATACT----TATTCCTCAAGGGACTGT-CTGAGGTCAAAGACCTGT--TCTGTTTTATCTTCT-------CGCAACTCCCCTGGTGCTATGTC-TGTGGTACTGATTGA-----GCGGAAGAAGATAAGAGAGGAG--GTTCCCT-GGGAGGGAGTGGGAAAGGTTAGTAGGAGGGGACT-AGATAGGTACGCTCATCC------TT---AACCTTCTAGGAGAACCGGAGCCTTACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTGGAATGGACAAGTGACACCGTGGACAATGAACACATGGGCCGCCGCTCATCAAAATGTGAGTAATTGTTGGCCCACAG--------------------TAGCCCTGG-------AGTTCTGGCTCC---------CTTCAGCGTATCTTGTATCTGCTCATATCCACTGGCTTTCCAGAAGCCCCC--AGATGC-TCATGGTTTTGTCGCTTTTTTGGTGGTTCTGTGGTATC----------------------AGGGAAAGAGGTAGGA---AAGG-GCTAGAACTGG--------AAT-TGCCTAGGTCTGATGACAAG---AAGTATCAGAGGTGGGAGAAGTAGGGCTTTGAATTCATGGCTCTGTAAGAGGACAAGAGGAGTGGG-GCCTGAGTCCC-AGAGG--GTGG-GCCTGGGGAAGGTGGATCCTGGAACGTAGGAG------------AAAATAGGAATTTTCACTGAGTTTGAGTGGGAATGGATCTG---ACTATACATCTTACCCTTCCTCCTCTTTAACTGGGCTCCTCCC-----TCTAAATCTAGGCTGCTGTATTTATGAGAAACCTCGGGCCTTTGGCGAGAGCTCCACGGAAAGTGATGAGGAGGAAGAAGAGGGCTGTGGTCATACACACTGTGTACGTGGCCACCGCAAAGGACGGCGTCGTGCAACCCTAGGACCGACCCCCACCACCCCTCCCCAGCCTCCTGACCCTTCCCAGCCCCCACCAGGACCAATGCAGCACTAAATTCCTCTCTCCTCCACCATTCCTGTGTCTGTCTGGCCCTGAATGTATTCATGTGGCTA------------------------------CTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     314446 1167 +   1495729 AGGGATCTGG-AAA----AAGGGAGATCAAAGATTAGGTGCTGGGGACTG--AAAAGTAATTTTCATGTATTAATACTACCAAGGATGATGTGGGGAGGAAGACAGAGAAACAGCGAGGATTATATTTTCCTTTGAAGAGTTGC---TGGAACCTTCCTTAGGTCAGAAATTGTGCCTTCTCT---TATACTGGTGAT--ATAAGAACAGGAAATAATACT----TATTCCTCAAGGGACTGT-CTGAGGTCAAAGACCTGT--TCTGTTTTATCTTCT-------CACAACTCCCCTGGTGCTATGTC-TGTGGTACTGATTGA-----GCGGAAGAAGATAAGAGAGGAG--GTTCCCT-GGGAGGGAGTGGGAAAGGTTAGTAGGAGGGGACT-AGATAGGTACGCTCATCC------TT---AACCTTCTAGGAGAACCGGAGCCTTACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTGGAATGGACAAGTGACACCGTGGACAATGAACACATGGGCCGCCGCTCATCAAAATGTGAGTAATTGTTGGCCCACAG--------------------TAGCCCTGG-------AGTTCTGGCTCC---------CTTCAGCGTATCTTGTATCTGCTCATATCCACTGGCTTTCCAGAAGCCCCC--AGATGC-TCATGGTTTTGTCACTTTTTTGGTGGTTCTGTGGTATC----------------------AGGGAAAGAGGTAGGA---AAGG-GCTAGAACTGG--------AAT-TGCCTAGGTCTGATGACAAG---AAGTATCAGAGGTGGGAGAAGTAGGGCTTTGAATTCATGGCTCTGTAAGAGGACAAGAGGAGTGGG-GCCTGAGTCCC-AGAGG--GTGG-GCCTGGGGAAGGTGGATCCTGGAACGTAGGAG------------AAAATAGGAATTTTCACTGAGTTTGAGTGGGAATGGATCTG---ACTATACATCTTACCCTTCCTCCTCTTTAACTGGGCTCCTCCC-----TCTAAATCTAGGCTGCTGTATTTATGAGAAACCTCGGGCCTTTGGCGAGAGCTCCACGGAAAGTGATGAGGAGGAAGAAGAGGGCTGTGGTCATACACACTGTGTACGTGGCCACCGCAAAGGACGGCGTCGTGCAACCCTAGGACCGACCCCCACCACCCCTCCCCAGCCTCCTGACCCTTCCCAGCCCCCACCAGGACCAATGCAGCACTAAATTCCTCTCTCCTCCACCATTCCTGTGTCTGTCTGGCCCTGAATGTATTCATGTGGCTA------------------------------CTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     412322 1168 -    863181 AGGGATCTGG-AAA----AAGGGAGATCAAAGATTAGGTGCTGGGGACTG--AAAAGTAATTTTCATGTATTAATACTACCAAGGATGATGTGGGGAGGAAGACGGAGAAACAGCGAGGATTATATTTTCCTTTGAAGAGTTGC---TGGAACCTTCCCTAGGTCAGGAATTGTGCCTTCTCT---TATACTGGTGAT--ATAAGAACAGGAAATAATACT----TATTCCTCAAGGGACTGT-CTGAGGTCAAAGACCTGT--TCTGTTTTATCTTCT-------CGCAACTCCCCTGGTGCTATGTCTTGTGGTACTGATTGA-----GCGGAAGAAGATAAGAGAGGAG--GTTCCCT-GGGAGGGAGTGGGAAAGGTTAGTAGGAGGGGACT-AGATAGGTACGCTCATCC------TT---AACCTTCTAGGAGAACCGGAGCCTTACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTGGAATGGACAAGTGACACCGTGGACAATGAACACATGGGCCGCCGCTCATCAAAATGTGAGTAATTGTTGGCCCGCAG--------------------TAGCCCTGG-------AGTTCTGGCTCC---------CTTCAGCGTATCTTGTATCTGCTCATATCCACTGGCTTTCCAGAAGCCCCC--AGATGC-TCATGGTTTTGTCACTTTTTTGGTGGTTCTGTGGTATC----------------------AGGGAAAGAGGTAGGA---AAGG-GCTAGAACTGG--------AAT-TGCCTAGGTCTGATGACAGG---AAGTATCAGAGGTGGGAGAAGTAGGGCTTTGAATTCATGGCTCTCTAAGAGGACAAGAGGAGTGGG-GCCTGAGTCCC-AGAGG--GTGG-GCCTGAGGAAGGTGGATCCTGGAACGTAGGAG------------AAAATAGGAATTTTCGCTGAGTTTGAGTGGGAATGGATCTA---ACTATACATCTTACCCTTCCTCCTCTTTAACTGGGCTCCTCCC-----TCTAAATCTAGGCTGCTGTATTTATGAGAAACCTCGGGCGTTTGGTGAGAGCTCCACGGAAAGTGATGAGGAGGAAGAAGAGGGCTGTGGTCATACACACTGTGTACGTGGCCATCGCAAAGGACGGCGTCGTGCAACCCTAGGACCGACCCCCACCACCCCTCCCCAGCCTCCTGACCCTTCCCAGCCCCCACCAGGACCAATGCAGCACTAAATTCCTCTCTCCTCCACCATTCCTGTGTCTGTCTGGCCCTGAATGTATTCATGTGGCTA------------------------------CTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29564416 1167 -  71996105 GGGGATCTGG-AAA----AAGGGAGATCAAAGATTAGGTGCTGGGGACTG--AAAAGTAATTTTCATGTATTAATACTACCAAGGATGATGTGGGGAGGAAGACGGAGAAACAGCGAGGATTATATTTTCCTTTGAAGAGTTGC---TGGAACCTTCCCTAGGTTAGGAATTGTGCCTTCTCT---TATACTGGTGAT--ATAAGAACAGGAAATAATACT----TATTCCTCAAGGGACTGT-CTGAGGTCAAAGACCTGT--TCTGTTTTATCTTCT-------CGCAACTCCCCTGATGCTTTGTC-TGTGGTACTGATTGA-----GCTGAAGAAGATAAGAGAGGAG--GTTCCCT-GGGAGGGAGTGGGAAAGGTTAGTAGGAGGGGACT-AGATAGGTACGCTCATCC------TT---AACCTTCTAGGAGAACCGGAGCCTTACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTGGAATGGACAAGTGACACCGTGGACAATGAACACATGGGCCGCCGCTCATCAAAATGTGAGTAATTGTTGGCCCGCAG--------------------TAGCCCTGG-------AGTTCTGGCTCC---------CTTCAGCGTATCTTGTATCTACTCATATCCACTGGCTTTCCAGAAGCCCCC--AGATGC-TCATGGTTCTGTCGCTTTTTTGGTGGTTCTGTGGTATC----------------------AGGGAAAGAGGTAGGG---AAGG-GCTAGAACTGG--------AAT-TGCCTAGGTCTGATGACAAG---AAGTATCAGAGGTGGGAGAAGTAGGGCTTTGAATTCGTGGCTCTCTAAGAGGACAAGAGGAGTGGG-GCCTGAGTCCC-AGAGG--GTGG-GCCTGGGGAAGGTGGATCCTGGAACGTAGGAG------------AAAATAGGAATTTTCACTGAGTTTGAGTGGGAATGGATCTG---ACTATGCATCTTACCCTTCCTCCTCTTTAACTGGGCTCCTCCC-----TCTAAATCTAGGCTGCTGTATTTATGAGAAACCTCGGGCCTTTGGCGAGAGCTCCACGGAAAGTGATGAGGAGGAAGAAGAGGGCTGTGGTCATACACACTGTGTACGTGGCCACCGCAAAGGACGGCGTCGTGCAACCCTAGGACCGACCCCCACCACCCCTCCCCAGCCTCCTGACCCTTCCCAGCCCCCACCAGGGCCAATGCAGCACTAAATTCCTCTCTCCTCCACCATTCCTGTGTCTGTCTGGCCCTGAATGTATTCATGTGGCTA------------------------------CTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     248223 1167 -    735854 GGGGATCTGG-AAA----AAGGGAGATCAAAGATTAGGTGCTGGGGACTG--AAAAGTAATTTTCATGTATTAATACTACCAAGGATGATGTGGGGAGGAAGACGGAGAAACAGCGAGGATTATATTTTCCTTTGAAGAGTTGC---TGGAACCTTCCCTAGGTCAGGAATTGTGCCTTCTCT---TATACTGGTGAT--ATAAGAACAGGAAATAATACT----TATTCCTCAAGGGACTGT-CTGAGGTCAAAGACCTGT--TCTGTTTTATCTTCT-------CGCAACTCCCCTGGTGCTATGTC-TGTGGTACTGATTGA-----GCTGAAGAAGATAAGAGAGGAG--GTTCCCT-GGGAGGGAGTGGGAAAGGTTAGTAGGAGGGGACT-AGATAGGTACGCTCATCC------TT---AACCTTCTAGGAGAACCGGAGCCTTACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTGGAATGGACAAGTGACACCGTGGACAATGAACACATGGGCCGCCGCTCATCAAAATGTGAGTAATTGTTGGCCCGCAG--------------------TAGCCCTGG-------AGTTCTGGCTCC---------CTTCAGCGTATCTTGTATCTGCTCATATCCACTGGCTTTCCAGAAGCCCCC--AGATGC-TCATGGTTTTGTCGCTTTTTTGGTGGTTCTGTGGTATC----------------------AGGGAAAGAGGTAGGA---AAGG-GCTAGAACTGG--------AAT-TGCCTAGGTCTGATGACAAG---AAGTATCAGAGGTGGGAGAAGTAGGGCTTTGAATTCATGGCTCTCTAAGAGGACAAGAGGAGTGGG-GCCTGAGTCCC-AGAGG--GTGG-GCCTGGGGAAGGTGGATCCTGGAACGTAGGAG------------AAAATAGGAATTTTCGCTGAGTTTGAGTGGGAATGGATCTG---ACTATACATCTTACCCTTCCTCCTCTTTAACTGGGCTCCTCCC-----TCTAAATCTAGGCTGCTGTATTTATGAGAAACCTCGGGCGTTTGGTGAGAGCTCCACGGAAAGTGATGAGGAGGAAGAAGAGGGCTGTGGTCATACACACTGTGTACGTGGTCATCGCAAAGGACGGCGTCGTGCAACCCTAGGACCGACCCCCACCACCCCTCCCCAGCCTCCTGACCCTTCCCAGCCCCCACCAGGGCCAATGCAGCACTAAATTCCTCTCTCCTCCACCATTCCTGTGTCTGTCTGGCCCTGAATGTATTCATGTGGCTA------------------------------CTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     202505 1158 -   1829203 GGGGATCTGG-AAAAAGGAAGGGAGATCAAAGATTAGGTGCTGGGGACTG--AAAAATAATTTTCATGTATTAATACTACCAAGGATGATTTGGGGAGGAAGACGGAGAAACAGCGAGGATTATATTTTCCTTTGAAGAGTTGC---TGGAACCTTCCCTAGGTTAGGAATTGTGCCTTCTCT---TATACTGGTGAT--GTAAGAACAGGAAATAATACT----TATTCCTCAAGGGACTGT-CTGAGGTCAAAGACCTGT--TCTGTTTTATCTTCT-------TGCAACTCCTCTGGTGCTATGTC-TATGGTACTGATTGA-----GCTGAAGAAGATAAGAGAGGAG--GTTCCCT-GGGAGGGAGTGGGAAAGGTTAGTAGGAGGGGACT-AGATAGGTACTCTCATCC------TT---AACCTTCTAGGAGAATCGGAGCCTTACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTGGAATGGACAAGTGACACTGTGGACAATGAACACATGGGCCGCCGCTCATCAAAATGTGAGTAATTGTTGGCCCGCAG--------------------TAGCCCTGG-------AGTTCTGGC----------------------TCTGGTATCTACTGATATCCACTGGCTTTCCAGAAGCCCCC--AGATGC-TCATAGTTCTGTCACTTTTTTGGTGGTTCTGTGGTATC----------------------AAGGAAAGAGGTAGGG---AAGG-GCTAGAACTGG--------AAT-TGCCTAGATATGATGACAAG---AAGTATCAGAGGTGGGAGAAGTAGGGCTTTGAATTCGTGGCTCTCTAAGAGGACAAGAGGAGTGGG-GCCTGAGTCCC-AGAAG--GTAG-GCCTGGGGAAAGTGGATCCTGGAACGTAGGAG------------AAACTAGGAATTTTCGCTGAGTTTGAGTGGGAATGGAACTG---ACTATACATCTTACCCTTCCTCCTCTTTAACTGGGCTCCTCCC-----TCTAAATCTAGGCTGCTGTATTTATGAGAAACCTCGGGCCTTTGGCGAGAGCTCCACGGAAAGTGATGAGGAGGAAGAAGAGGGCTGTGGTCATACACACTGTGTACGTGGCCACCGCAAAGGACGGCGTCGTGCAACCCTAGGACCGACCCCCACCACCCCTCCCCAGCCTCCTGACCCTTCCCAGCCCCCACCAGGGCCAATGCAGCACTAAATTCCTCTCTCCTCCACCATTCCTGTGTCTGTCTGGCCCTGAATGTATCCATGTGGCTA------------------------------CTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30374947 1180 + 171630274 GGGGATCTGG-AAAAAGGAAAGGAAATCAAAGATTAGGTGCTGGGGACCG--AAAAATAATTTTCATGTATTCATACTACCAAGGATGATTTGGGGAGGAAGACAGAGAAACAGCAAGGATTATATTTTCCTTCAAAGAGTTGC---TGGGACCTTCCCTAGGTTAGCAATTGAA--TCCTCT---TATACTGGTGGT--ATAAGAACAGGAAATAATAC-----TATTCCTCAAGGGACTCC-CTGAGGTCAAAGACCTGT--TCTGTTTTATCTTGT-------CTCAGCTCCTCTGGTGCTATGTC-TATGGTACTGATTGA-----ACTAAAGAAGAAAAGAGAAAAG--GTTCCCT-GGGAGGGAGTGGGAAAGGTCAGTAGGAAGGAACT-AGATAGGTACGCCCATCC------TT---AACCTTCTAGGAGAACCGGAGCCTTACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTGGAATGGACAAGTGACACTGTGGACAATGAACACATGGGCCGCCGCTCATCAAAATGTGAGTAATTGTTGGCCCACAG--------------------TAGTCCTGG-------AGTTCTGGCTCC---------CTTCAGCATATCTTGTATCTACTCATATTCACTGGCTTTCCAGAAGCCCCC--AGATGC-TTGTAATTCTGTCACTTTTTTGGCGGTTCTCTGGTATC-AGGGAAAGAGGTTAAGGGCTGAGGGAAAGAGGTAGGG---ACGG-GCTAGAATTGG--------ATT-TGCCTAGGTCTGCCAGCAAG---AAGTATCAGAGGTGGCAGAAGTGGGGCTTTGATTTCTTGGTTCTGTAAGAGGACAAGGGGGCTAGG-GCCTGAGTCCC-AAGGG--GTGG-GCCTGGGGGAGCTGGATCCTGGAAGGTAAGAG------------GAAATAGAAATTTTCACTGAGATTGAGTGCAAATGGAACTG---ATTGTACATCTTACCCT---TCCTCTTTAACTGGGCTCCTCTC-----TCTAAATCCAGGCTGCTGTATTTATGAGAAACCTCGGGCCTTTGGTGAGAGCTCTACGGAAAGTGATGAGGAGGAAGAAGAGGGCTGTGGTCATACACACTGTGTACGTGGCCACCGCAAAGGACGGCGTCGTGCATCCCTGGGACCG------ACCACCCCTCCCCAGCCTCCTGACCCTTCCCAGCCCCCACCAGGGCCAATGCAGCACTAAATTCCTCTCTACCCAACCATTCCTGTGTCTGTCTGGCCCTGAATGTATCCATGTGGCTA------------------------------CTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           198311 1186 +    515838 CAGGATCTGG-AAAAAGGAAAGGAAATCAAAGATTAGGTACTGGGGACTG--AAAAATAATTTTCATGTATTAATACTACCAAGGATGATTTGGGGAGGAAGACAGAGAAACAGCAAGGATTATATTTTCCTTTGAAGGGCTGC---TGGGACCTTCCCTAGGTTAGGAATTGAA--TTCTCT---TATACTGGTGGT--ATAAGAACAGGAAATAATACT----TATTCCTCAAGGGACTCC-CTGAGGTAAAAGACCTGT--TCTGCTTTATCTTGT-------CTCAGCTCCTCTGGTGCTATGTC-TGTGGTACTGATTGA-----ACTAAAGAAGAAAAGAGAATAG--GTTCCCT-GGGTGGGAGTGGGAAAGGTCAGTAGGTAGGAACT-AGATAGGTATGCCCATCC------TT---AACCTTCTAGGAGAACCGGAGCCTTACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTGGAATGGACAAGTGACACTGTGGACAATGAACACATGGGCCGCCGCTCATCAAAATGTGAGTAATTGTGGGCCCACGG--------------------TAGCCCTGG-------AGTTCTGGCTCC---------CTTCGGCATATCTTGTATCTACGCATATCCACTGGCTTTCCAGAAGCCTCC--AGATGC-TTATAATTCTGTCACTTTTTTGGTGGTTCTCTGGTATC-AGGGAAAGAGGTTAAGGGTTGAGGGAAAGAGGTAGGG---AAGG-GCTAGAATTGG--------AAT-TGCCTAGGTCTGCCGGCAAG---AAGTATCAGAGGTGGCAGAAGTGGGGCTTTGATTTCTTGGTTCTCTAAGAGGGCAAGTGGGCTGGG-GCCTGAGTCCC-AA-GG--GTGG-GCCTGGGGGAGCTGGATCCTGGAAGGTAGGAG------------GAAATAGAAATTTTCACTGACATTGAGTGGAAATGGAACTG---ATTATACATCTTGCCCT---TCCTCTTTAACTGGGCTCCTCCC-----TCTAAATCCAGGCTGCTGTATTTATGAGAAACCTCGGGCCTTTGGTGAGAGCTCCACGGAAAGTGATGAGGAGGAAGAAGAGGGCTGTGGTCATACACACTGTGTACGTGGCCACCGCAAAGGACGGCGTCGTGCGTCCCTGGGACCGACCCCCACCACCCCTCCCCAGCCTCCTGACCCTTCCCAGCCCCCACCAGGGCCAATGCAGCACTAAATTCCTCTCTCCCCCACCATTCCTGTGTCTGTCTGGCCCTGAATGTATCCATGTGGCTA------------------------------CTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     830412 1178 -   1771730 CAGGATCTGG-AAAAAGGAAAGGAAATCAAAGATTAGGTGTTGGGGACTG--AAAAATAATTTTCATGTATTAATACTACCAAGGATGATTTGGGGAGGAAGACGGAGAAACAGCAAGGATTATATTTTCCTTTGAAGAGTTGC---TGGGACCTTCCCTAGGTTAGGAATTGAA--TTCTCT---TATACTGGTGGT--ATAAGAACAGGAAATAATACT----TATTCCTCAAGGGACTCC-CTGAGGTCAAAGATCTGT--TCTGTTTTATCTTGT-------CTCAGCTCCTCTGGTGCTATGTC-TATG---------GA-----ACTAAAGAAGAAAAGAGAATAG--GTTCCCT-GGGAGGGAGTGGGAAAGATCAGTAGGAAGGAACT-AGAGAGGTATGCCCATCC------TT---AACCTTCTAGGAGAACCGGAGCCTTACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTGGAATGGACAAGTGACACTGTGGACAATGAACACATGGGCCGCCGCTCATCAAAATGTGAGTAATTGTTGGCCCACAG--------------------TAGCCCTGG-------AGTTCTGGCTCC---------CTTCGGCATATCTTGTATCTACTCATATCCACTGGCTTTCCAGAAGCCCCA--AGATGC-TTATAATTCTGTCACTTTTTTGGTGGTTCTCTGGTATC-AGGGAAAAAGGTTAAGGGTTGAGGGAAAGAGGTAGGG---AAGG-GCTAGAATTGG--------AAT-TGCCTAGGTCTGCCGGCAAG---AAGTATCAGAGGTGGCAGAAGTGGGGCTTTGACTTCTTGGTTCTCTAAGAAGACAAGTAGGCTGGG-GCCTGAGTCCC-AAGGG--GTGG-ACCTAGGGGAGCTGGATCCTGGAAGATAGGAG------------GAAATAGAAATTTTCACTGAGATTGAGTTGAAATGGAACTG---ATTATACATCTTACCCT---TCCTCTTTAACTGGGCTCCTCCC-----TCTAAATCCAGGCTGCTGTATTTATGAGAAACCTCGGGCCTTTGGTGAGAGCTCCACGGAAAGTGATGAGGAGGAAGAAGAGGGCTGTGGTCATACACACTGTGTACGTGGCCACCGCAAAGGACGGCGTCGTGCATCCCTGGGACCGACCCCCACCACCCCTCCCCAGCCTCCTGACCCTTCCCAGCCCCCACCAGGGCCAATGCAGCACTAAATTCCTCTCTCCCCCACCATTCCTGTGTCTGTCTGGCCCTGAATGTATCCATGTGGCTA------------------------------CTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     316211 1186 -    383796 GGGGATCTGG-AAAAAGGAAAGGAAATCAAAGATTAGGTGCTGGGGACTG--AAAAATAATTTTCATGTATTCATACTACCAAGGATGA-TTGGGGAGGAAGATGGAGAAACAGCAAGGATTATATTTTCCTTTGAAGAGTTGC---TGAGACCTTCCCTAGGTTAGGAATTGAA--TTCTCT---TATACTGGTGGT--ATAAGAACAGGAAATAATACT----TATTCCTCAAGGGACTCC-CTGAGTTCAAAGACCTGT--TCTGTTTTATCTTGT-------CTCAGCTCCTCTGGTGCTATGTC-TATGGTACTGATTGA-----ACTAAAGAAGAAAAGAGAAGAG--GTTCCCT-GGGAGGGAGTGGGAAAGGTCAGTAGGAAGGAACT-AGATAGGTATGCCCATCC------TT---AACCTTCTAGGAGAACCGGAGCCTTACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTGGAATGGACAAGTGACACTGTGGACAATGAACACATGGGCCGCCGCTCATCAAAATGTGAGTAATTGTTGGCCCACAG--------------------TAGCCCTGG-------AGTTCTGGCTCC---------CTTAGGCATATCTTGTATCTACTCATATCCACTGGCTTTCCAGAAACCCTC--AGATGC-TTATAATTCTGTCACTTTTTTGGTGGTTCTCTGGTATC-AGGCAAAGAGGTTAAGGGTTGAGGGAAAGAGGTAGGG---AAGG-GGTAGAATTGG--------AAT-TGCCTAGGTCTGCCGGCAAG---AAGTATCAGAGGTGGCAGAAGTGGGGCTTTGATTTCTTGGTTCTCTAAGAGGGCAAGTGGTCTGGG-GCCTGAGTCCC-AAGGG--GTGG-GCCTGGGGGAGCTGGATCCTGGAAGGTAGGAG------------GAAATAGAAATTTTCACTGAGATTGAGTGGAAATGGAACTG---ATTATACATCTTACCCT---TCCTCTTTAACTGGGCTCCTCCC-----TCTAAATCCAGGCTGCTGTATTTATGAGAAACCTCGGGCCTTTGGTGAGAGCTCCACGGAAAGTGATGAGGAAGAAGAAGAGGGCTGTGGTCATACACACTGTGTACGTGGCCACCGCAAAGGACGGCGTCGTGCATCCCTGGGACCGACCCCCACCACCCCTCCCCAGCCTCCTGACCCTTCCCAGCCCCCACCAGGGCCAATGCAGCACTAAATTCCTCTCTCCCCCACCATTCCTGTGTCAGTCTGGCCCTGAATGTATCCATGTGGCTA------------------------------CTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               295248 1241 + 123392446 -gggacctgg-aaaaagaaaaggaaaTCAAAGATTAGGCACTGGAGACTG-AAAAAATAATTTTCTTGTGTTAATACTACCAAGGATGATTTGGAGAGGAAGATGGAAAAACAGCGAGGATTATATTTTCCTTTGAAGATTTACTGGTGGGGCTTTCCATAGGTTAGGAATTGTGTCTCCTCTG--TGTACTGGTGGTTATCAAGAACAAGAAATAATACT----TACTCCTCAAGGGATTTC-TTGAGGTCAAAGACCTGT--TCTGTTTTAGCTTTTCTCAGTACTCAGCTCTTCTGGTGCTATGTA--------CTGATTGA-----GGTGGGGAAGAGAAGAGAGAAG--GTCCCCCAGGGAGGGAGTGGGAAAGGTCAGTAGGATGGGACTAAGACAGGCATGCCCATCCC---TCTT---ACCCTTCTAGGAGAACCGCAGCCTAACCATCAAACTTCGGAAACGGAAGCCCGAGAAAAAGGTGGAATGGACGAGTGACACTGTGGACAATGAACACATGGGGCGCCGCTCATCAAAATGTGAGTCATTGTTGCCCCACAG--------------------CAACCCTGC-------CATTCTGGCTCC---------CTTCTGTGCATCTTCTGCCTTCTCACAGCCTCTGGCCTCCAAGAAGCCCCA--GAATGC-TCATATTTTTGTCACTTTCTTGGTGGTTCTATGGCATCGAGGGAAGGAGGTTAAGGTTAGAGGGAAAGAGGTGAGG---AGGG-GCTAGAACTGT--------GGTGTGCCAGGGCCTGATGGTAAG---AGGTGTCAGAA-TGGAAGAAGTGGGGCTTTGGATTCTTGGCTCTCTAAATGAACAAGGGAATTGGGTGCCTGAGTCCC-AGGGC--ATGG-GCCTGGGGAAGCTGGATCCTGGAAGGTAGAAGGAGACAATGGTGAAAGTAGAAATTTTCACTGAGATTGAGGGGGAATGGAACTG---ACTATTCATCTTACTCTTCCTCCTTTTTAACTGAGCTCCTCCT-----TCCAAATCCAGGCTGCTGTATTTATGAGAAACCTCGGGCCTTTGGTGAGAGCTCCACGGAGAGTGATGAGGAGGAAGAGGAGGGCTGTGGTCATACACACTGTGTACGCGGCCACCGCAAAGGACGGCGTCGTGCAACCCTTGGACCAACCCCTACCACCCCTCCTCAGCCTCCTGACCCCTCCCAGCCCCCTCCAGGGCCAATGCAGCACTAAATTCCTCTCTCCCCCAACTTTCCTG----TGTCTGGCCCTGAATGTATCCATGTGGCTACTTGAGGACTAAACC--TATGGTTTGATCCCTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      99246 1241 -   1411461 -GAGACCTGG-AAAAAGAGAAGGAGATCAAAGATTAGGCACTGGAGACTG-AAAAAATAATTTTCGTGTGTTAATACTACCAAGGATGATTTGGGGAGGAAGACGGAGAAACAGCAAGGATTATATTTTCCTTTGAAGATTTGC---TGGGACTTTCCATAGGTTAGGAATTGTATCTTCTCTG--TATACTGGTGGCTATCAAGAACAGGAAATGATACT----TTCTCCTCAAGGGATTTC-CTGATGTCAAAGACCTGT--TCCATTTTATCTTTTCTCAGCACTCAGCTCCTCTGGTGCTATGTA--------CTGACTGA-----GCTGGGGAAGAGAAGAGAGAAG--GTCCCCC-GGGAGGGAGCGGGAAAGGTCAGTAGGATGGGACT-GGACTGGCATGCCCATCCC---TCTT---AACCTTCTAGGAGAACCGGAGCCTAACCATCAAACTTCGGAAACGCAAGCCAGAGAAAAAGGTGGAATGGACGAGTGACACTGTGGACAATGAACACATGGGGCGCCGCTCATCCAAATGTGAGTAACTGTTGCCCCACAG--------------------TAGCCCTGT-------GGTCCTGCCTCC---------CTTCTGCGTATCTTCTACCTTCTCACAGCCACTGGCCTCCCAGAAGCCCCA--AGATGC-TCATATTTTTGTCACTGTCTTGGTGGTTCTCTGGCATCTGGGGAAGGAGGTTAAGGTTAGAGGGAAAGAGGTAAGG---AGGG-GCTGGAACTGC--------GGTGTGCCAAGGCCTGACGGCAAG---AGGTGTCAGAAGTGGGAGAAGTGGGGCTTTGGATTCTTGGCTCTCTAAATGAACAAGGGAATTGGGTGCCTGAGTCCC-AGGGG--GTGG-GCCTGAGGAAGCTGGATCCTGGAAAGTAGGAGGAGACAATGGTGAAAGTAGGAATTTTCACCAAGATTGAGGGGGAATGGAACTG---ACTGTGCATCTTACTCTTCCTCCTTTTTAACTGAGCTCCTCCT-----TCCAAATCCAGGCTGCTGTATTTATGAGAAACCTCGGGCCTTTGGTGAGAGCTCCACAGAGAGTGATGAGGAGGAAGAGGAGGGCTGTGGTCATACACACTGTGTACGGGGCCACCGCAAAGGACGGCGTCGTGCAACCCTTGGACCAACCCCTACCACCCCTCCCCAGCCTCCTGACCCCTCCCAGCCCCCTCCAGGGCCAATGCAGCACTAAATTCCTCTCTCCCCCACCATTCCTGTGTCTGTCTGGCCCTGAATGTATCCATGTGGCTACTTGGGGACTAAACC--TATGATTTGATCCCTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           246320 1203 +  18854210 -GGAACCTGG-AAAAATAAAAGGAGATCAAGTATTAGGCACTGGAGACTGAAAAAAATAATTTTCATGTGTTAATACTACCAAGGATGATTTGGGGAGGAAGACGGAGAAACAGCGAGGATTATATTTTCCTTTGAAGATTTGC---TGGGACCTTCCCTAGGTTAGGAATTGTGTCTTCTCTA--TATACTGGTGGTTATCAAGAACAGGAAAT------------CCCCTCA---GATTTC-CCGAGGTCTAAGACCTGT--TCTATTTTATTTTTTTTCAGCACTCAGCTTCTCTGGTGCTATGTA--------TTGATTGA-----GCTGGGGATGAGAAGA----------------GGGGGGGAGTGGGAAAGGTCAGTAGAATGGTACT-AGACAAGTATGCCCATCCC---TTTT---AACTTTCTAGGAAAATCGGAGCCTAACCATCAAACTTCGGAAACGGAAGCCAGAGAAAAAGGTGGAATGGACGAGTGACACTGTAGACAATGAACACATGGGGCGCCGCTCATCAAAATGTGAGTAATTATTGCCCCACAA--------------------TAGCCCTGG-------ATTTCTGGCTAA---------CTTCTGCATATCTTCTGCCTT---------------TTCCCAGAAGCCCCT--GGATGC-TGATGTTTCTGTCACTTTCTTGATGGTTGTCTGACATCAGGGGCAGGAGGTTAAGGTTAAAGGGAAAGAGGGAAGG---AAAG-GCTAGGACTGT--------AGTGTGTCAAGCCCTGACAGCCAG---TAGTGTCAGTGGTGGAAGAAGTGGGACTTTGGATTCCTGGATTTCTAAATGGACAAGGAACATAGATGCCCAAGTCCCAAAGGG--GTGG-ATCTGGGGAAGCCGGATCCTAGAAGTTATGAGGAGACAATGGTAAAAGTAGGAATTTTCA-TGAGATTGAAGGGGAATGGAACTG---ACTATACATCTTACTCTTCCTCCTTTTTAACTGAGCTCCTCCC-----TCCAAATCCAGGCTGCTGTATTTATGAGAAACCTCGGGCCTTTGGAGAGAGCTCCACGGAGAGTGATGAGGAGGAAGAGGAGGGCTGTGGTCATACACACTGTGTACGAGGCCACCGCAAAGGACGGCGTCATGCAACCCTTGGACCAACCCCCACCACACCTCCCCAGCCTCCTGATCCTTCTCAGCCCCCTCCAGGGCCAATGCAGCACTAAATTCCTCTCTCCCCTACTATTCCTGTGTCTGTCTGGCCCTGAATGTATCCATTTGGCTACTTGGGGACTAAACC--TATGGTTTGATCCCTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58036950 1047 -  94987271 AGAGGTGTGA-AGA-AGAAAGTGAGATCAAAGGCCAGTCACAGGAAAGGG-AGAAAATAACATTCATATATTAATGCCACCAAGGGTGAT----------------------AGCGTTGGTTGTATCTTAGTTTGCCAATTTGC---TGGCACCTTCCCTAGTTTAAGAATTG--CCTTCTTTG--CATACTATTGGTTATCAAGAACAGGGATTCATACT------CTCCACA------------------AACAGGCTGT--CCTGC----------------------CTCTCCAGGGGCATGATG-TGTGTTACTGACTGA-----GCCAGGGAAGAGAAAAAAGGAG--GTTCCAT----AGGAAACAGGAAAAATCAAGAGGAAGTGAGTCAGATGGGCCCACACCTCT-----TTT---AACTTTTCAGGAGAATCAGAGCCTAACTATGAAACTTCGGAAACGCAAGCCAGAGAAGAAGGTGGAGTGGTCCAGTGACACTGTGGACAATGAGCATATGGGGCGACGCTCGTCGAAATGTGAGT-GTGGGTGGCC--CAG--------------------TGTCCCTGG-------------------------------------------------------------------CCACCATCTCAC--TGTTGCTTTATAGCTCTATCGAGTTCTTGGT-------TGGAA------------------------AGAAAAATAGGTGGGA---A------TAAAACTATGCGGTACCAAC-TGCCTGGAGTTAGGGGTGGGGGCGGGGGCAAGCCATGGCAGAATGGGAGTCAGGTTTTTCCGACTCTC----------------------TCTTGAATTCC-TGGGG--GAAGAGGCTAAGGCAGCTGGATTCCAGAA-----AAG------------TAGGGAGAGGTTTTCACACAGATCTGGTGGAAATGAAACTG---ACTGAACA--CTGCTCTTCATCCTTCTTAGCTGGCTTTCTCTC-----TCTCCATTCAGGCTGCTGTATTTATGAGAAGCCTCGGGCCTTTGGCGAGAGCTCCACCGAGAGTGATGAGGATGAAGAAGAAGGCTGTAGTCATAAGCACTGTGTACGGGGTCACCGCAAAGGACGGCGTCCTACAACCCCAGCACCCACCCCAACCACTCCTCCACAGCCTCCTGATCCCTCTAAGCCCCCTCCAGGACCTATGCAGCACTAAATCCCTCTC------ACCATTCATGTGTCTGCCT-GCCCCAAATATATCCATCTGACAT---GGGGACTCCACC--CATTGCCTCC---GTT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26290161 1177 +  26524999 GGGGATCCTC-ACAGTGAGCCGCAGGT-GAAGGTTAGGTCCTGGGCGCTG-AGAAAATCCTCCTCGAGCATTAGTCACACCGAGGCCGATGTGGGGAGGAGGATGGAGAGACGGAGAGGGTTGAGCTTTCCCTGGAAGATGTGC---GGGGACCCTCC-TAGGTTAG---TTGTGTTTTCTCTGTCCACGAAGCTGGG--ATGGACACAGAATATGAAGCGGCAGAATTCCCCA-GGGAC--C-CGGAGGTCACACACTTGTGCGCTACCCCACCTGCG-------CCGGGCCCCTCTGCCACCCTGGG-TGGGGC-CTGATGGACTGGGGTGGGGGGTGCTGGGAGACATG--ACCCCCCAGGGAGGGATGAGGAAGGGACGGCCAGAGGGGACC-AGATGGCTATGTCTGTCT------TTCCCCACCTTCCAGGAGAACCGGAGCCTGACCATCAAACTGCGGAAACGGAAGCCAGAGAAGAAGGTAGAATGGACGAGTGACACTGTGGACAATGAGCACATGGGGCGCCGCTCATCCAAATGTGAGTGCTCACTGCCCTGCTGCCCATCCCCACCCCACCACCCAGCTCTGGGTGGGGGAGCCCAGGTGCCTCCTCTGTGCCCCCACCCCTCTTGGCCTTCCTTCTCACACCTGACCACCCTGAGGCCCCC--AGCTGC-TAACAGCCTTGTCACAGCCTGGGTGGTTCTCTGGCTTC----------------------GGGGACATGGATTAAGGTTATAG-GGGAGACATGG--------AAG-TGCCTGGGATTG---GCAGG------------------------------TTTGTGT---------------------------------GCCTGAGCCCC-AGGGGCAGCGG-GGCTAGAGAAGCTGGACCCTGGAAGG-AGAAG------------GAGCCAG-------TGCTGACACCCAATAGGAGTACAACTG---ATTATATGT-TAACTGGTGCTCCTTTC---CTGGGCTCCTCCC-----TCCGAATCCAGGTTGCTGTATTTACGAGAAACCTCGGGCCTTTGGCGAGAGCTCCACTGAGAGTGATGAGGAGGAAGAGGAAGGCTGTGGTCATACACACTGTGTTCGGGGCCACCGCAAAGGACAGCGTCGTACAACCCCAGGACCAAGCCCCACCAGCCCTCCGCAGCCTCCTGACCCCTCCCAGCCCCCTCCAGGGCCAATGCAGCACTAAATTCCTCTCTCCCCCACCACTCCTGTGTTTGTCTGGCCCTGACTGTATTCATGTGGCTACCTGGGGACTAAACCCACATGGTTTGATC-CCT
i canFam3.chr35            I 282 C 0
s dasNov3.JH569887            21262 1154 -     22419 GGAGGCCTGC-AAA--------CAGATCAAAGATGAGGGATTGGGGACTG-AGAAAATAATTTTCTTATATTAAT---ACCAAGAATGATTTGGGGACGAAGACGGAGAGACAGCGAGGATTATATTTTCACTTGAAGATTTGC---TGGGACCTTTCCTAGGTTAGGAATTGTGTCTTTTCTG--TATACTAGCGGTTATCAAGAACAGGAAATACTGCTTCACTAATCCTCGGGGGACTCTGATGATGCCAGAGACCTGT--TCTGTTTTACCTTCTCCCAGCACTCAGTTCCTCTGGTGCTG-GAC-TCCAGCACAG----------TCCTGGAAAGAACTGGGAAGGGTTGGCTTCT-GGGAGGGAGTGGGAAAGGTCAGTAGGAGGGGACT-CGATAGGTATGCCCATCCCTAATCTT---AACCTTCTAGGAGAACCGGAGCCTAACCATCAAACTTAGGAAGCGGAAGCCGGAGAAAAAGGTGGAATGGTCGAGTGACACTGTGGATAACGAGCACATGGGGCGCCGCTCATCAAAATGTGAGTGGTGCAGGGCCGGCAG--------------------TAGCCCTGG-------AAACCCGGCTGC---------CCT--GCACATCTCCTCCCTTCTCACATCC-CTGTCCCCCCCGAGGCCCCCTGAGGCAC-TCACCATCCCGCCTCTGTTTTGGTGGTTCTCTGACAGC----------------AGTTAGAGGGAAAGACGTAGGG---AGGGAGCCAGAACTGG--------GAC----------CTGAAGGCGAG---ATGGAGCAGAAGTGGGAGGAATAGGGCTTTGGGAAAGGAGAGCCC----ACGGTGAGGGGGCTGGT-GGCTGAGTCCC-AGGGA--GTGG-GCCTGGCAGTGT-------------------G------------GAGGTAGGAGTTGTCAC-GTGGTCCAGAGGGAGAGGAGCAGGAAACTGCAC---TGGCTCTTCCTCCTTTGTAACTAGGCTCCTTCCCCACTTCCCAACCCAGGCTGCTGTATTTATGAGAAACCTCGGGCCTTTGGCGAGAGCTCCACGGAGAGTGACGAGGACGAAGAGGAGGGCTGCGGCCACACACACTGTGTCCGGGGCCACCGCAAAGGGCAGCGTCATGCGTCCTTGGGATCGACCCCCACCTCCCCTCCCCAGCCCCCTGACCCGTCCCAGCCGCCGCCGGGACCAATGCAGCACTAAATGCCTCTC--CCCCTCCACTCCTGTGTCTGTCTGGCCCTGAATGTTCCCATGTGGCTA------------------------------CTT
i dasNov3.JH569887         C 0 N 0

a score=9313881.000000
s hg38.chr6_GL000254v2_alt  1413458 606 +   4827813 CTCCAGCCCCCTCCTTCCCTCTCTTCTGCCTGATAGAGGGAAGAGGAAGAGGAGGACGAACAGAGATCCTGAAATTCTGACTTGCTGCTATTCCAGAACCCAGCCTCCTGGGTTTCCCCAGTCCTCATTTTTCCTCCCAATACCCACCCTTCTCTCTCGAGGGATCTAGG-CACCTTGGTCCCAGTGTCTTCCTTTTGTTCTCACTGCCAAACTGCCTGTCCTGGGATCTAGTTATC----TTGGC--CC--TGCACTCTCAACATGAGTAGCGAACACTTAAATTGGGTTTTCAACAGTCCCAGCTTTCACTGCCAGGGTCCCAGTCAGATTCCAGGAA--TTTGCGCCCTAACTTTGCTTGCTAATCCTGGTTTAGAGCTATCCCACTAAAATATT----TA----ATCCTAATTCTTAGTCCTTGCCTGTGAGATATGAGGTCTTACAGGAGACCTCAGAGCTCCC-AG-----------CCCTTCTC--CTCCTGCTAACCCTTCTCACACCCTCAAGAGG----AGTT--AGAAAAGAG--GTCCTTGTCATTCTCACCTCTTATGGAAAATGGAAT-----------AAGAAATAATCA-TATCCTTTCTTCCCACCCTTCTCCTGTTATTTAGGATTTCTGACAAAGCTGGC
s panTro5.chr6             30286727 606 + 175400573 CTCCAGCCCCCTCCTTCCCTCTCTTCTGCCTGATAGAGGGAAGAGGAAGAGGAGGACGAACAGAGATCCTGGAATTCTGACTTGCTGCTATTCCAGAACCCAGCCTCCTGGGTTTCCCCAGTCCTCATTTTTCCTCCCAATACCCACCCTTCTCTCTCGAGGGATCTAGG-CACCTTGGTCCCAGTGTCTTCCTTTTGTTCTCACTGCCAAACTGCCTGTCCTGGGATCTAGTTATC----TTGGC--CC--TGCACTCTCAACATGAGTAGCGAACACTTAAATTGGGTTTTCAACAGTCCCAGCTTTCACTGCCAGGGTCCCAGTCAGATTCCAGGAA--TTTGCGCCCTAACTTTGCTTGCTAATCCTGGTTTAGAGCTATCCCACTAAAATATT----TA----ATCCTAATTCTTAGTCCTTGCCTGTGAGATATGAGGTCTTACAGGAGACCTCAGAGCTCCC-AG-----------CCCTTCTC--CTCCTGCTAACCCTTCTCACACCCTCAAGAGG----AGTT--AGAAAAGAG--GTCCTTGTCATTCTCACCTCTTATGGAAAATGGAAC-----------AAGAAATAATCA-TATCCTTTCTTCCCACCCTTCTCCTGTGATTTAGGATTTCTGACAAAGCTGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30517424 606 + 173848474 CTCCAGCCCCCTCCTTCCCTCTCTTCTGCCTGATAGAGGGAAGAGGAAGAGGAGGACGAACAGAGATCCTGGAATTCTGACTTGCTGCTATTCCAGAACCCAGCCTCCTGGGTTTCCCCAGTCCTCATTTTTCCTCCCAATACCCACCCTTCTCTCTCGAGGGATCTAGG-CACCTTGGTCCCAGTGTCTTCCTTTTGTTCTCACTGCCAAACTGCCTGTCCTGGGATCTAGTTATC----TTGGC--CC--TGCACTCTCAACATGAGTAGCGAACACTTAAATTGGGTTTTCAACAGTCCCAGCTTTCACTGCCAGGGTCCCAGTCAGATTCCAGGAA--TTTGCGCCCTAACTTTGCTTGCTAATCCTGGTTTAGAGCTATCCCACTAAAATATT----TA----ATCCTAATTCTTAGTCCTTGCCTGTGAGATATGAGGTCTTACAGGAGACCTCAGAGCTCCC-AG-----------CCCTTCTC--CTCCTGCTAACCCTTCTCACACCTTCAAGAGG----AGTT--AGAAAAGAG--GTCCTTGTCATTCTCACCTCTTATGGAAAATGGAAC-----------AAGAAATAATCA-TATCCTTTCTTCCCACCCTTCTCCTGTGATTTAGGATTTCTGACAAAGCTGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     224305 604 +   2037526 CTCCAGCCCCCTCTTTCCCTCTCTTCTGCCTGATAGAGGGAAGAGGAAGAGGAGGACGAACAGAGATCCTGGAATTCTGACTTGCTGCTATTCCAGAACCCAGCCTCCTGGGTTTCCCCAGTCCTCATTTTTCCTCCCAATACCCACCCTTCT-TCTCGAGGGATCTAGG-CACCTTGGTCCCAGTGTCTTCCTTTTGTTCTCACTGCCAAACTGCCTGTCCTGGGATCTAGTTATC----TTGGC--CC--TGCACTCTCAGCATGAGTAGCAAACACTTAAATTGGGTTTTCAACAGTCCCAGCTTTCACTGCCAGGGTCCCAGTCAGATTCCAGGAA--TTTG-GCCCTAACTTTGCTTGCTAATCCTGGTTTAGAGCTATCCCACTAAAATATT----TA----ATCCTAATTCTTAGTCCTTGCCTGTGAGATATGAGGTCTTACAGGAGACCTCGGAGCTCCC-AG-----------CCCTTCTC--CTCCTGCTAACCCTTCTCACACCCTCAAGAGG----AGTT--AGAAAAGAG--GTCCTTGTCATTCTCACCTCTTATGGAAAATGGAAC-----------AAGAAATAATCA-TATCCTTTCTTCCCACCCTTCTCCTGTGATTTAGGATTTCTGACAAAGCTGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74897324 606 + 122973662 CTCCAGCCCCCTCCTTCCCTCTCTTCTGCCTGATAGAGGGAAGAGGAAGAGGAGGATGAACAGAGATCCTGGAATTCTGACTTGCTGCTATTCCAGAACCCAGCCTCCTGGGTTCTCCCAGTCCTCATTTTTCCTCCCAATACCCACCCTTCTCTCTTGAGGGATCTGGG-CACCTTGGTCCCAGTCTCTTCCTTTTGTTCTCACTGCCAAACTGCCTGTCCTGGGATCTAGTTATC----TTGGC--CC--TGCACTCTCAACATGAGTAGCGAACACTTAAATTGGGTTTTCAATAGTCCCAGCTTTCACTGCCAGGGTCCCAGTCAGATTCCAGGAA--TTTGCACCCTAGCTTTGCTTGCTAATCCTGGTTTAGAGCTATCCCACTAAAATATT----TA----ATCCTAATTCTTAGTCCTTGCCTGTGAGATATGAGGTCTTACAGGAGACCTCAGAGCTCCC-AG-----------CCCTTCTT--CTCCTGCTAAGCCTCCTCACACCCTCAAGAGG----AGTT--AGAAAAGAG--GTCCTCGTCATTCTCACCTCTTATGGAAAATGGAAC-----------AAGAAATAATCA-TATCCTTTCTTCCCACCCTTCTCCTGTGATTTAGGATTTCTGACAAAGCTGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30771166 600 + 172585720 CTCCAGCCCCTTCCTTCCCTCTCTTCTGCCTGATAGAGGAAAGAGGAAGAGGAGGGTGAACAGAGATCCTGGAATTATGACTTGCTGCTATTCC--AACCCAGCCTCCTGGGTTCCCCCAGTCCTCATTTTTCCTCCCAATACCCACCCTTCTCTCTCAAGGGATCTAGT-CAGCTTGGTCCCAGTCTCTTCCTTTAGTTCTCACTGCCAAACTGCCTGTCCTGGGATCTAGTTATC----TTGGC--CC--TGCACGCT--ACATGAGTAGCAAACACTT--ATTGGGTTTTCAACAGTCCCAGCTTTCACTGCCAGGGTCCCAGTCAGATTCCAGGAA--TTTACAGCCTAGCTTTGCTTGCTAATCCTGGTTTAGAGCTATCCTACTAAAATATT----TA----ATCCTAAATCTTAGTCCTTGACTGTGAGATATGAGGTCTTATAGGAGACCTCAGGGCTCCC-AG-----------CCCTTCTC--CTCCTGCTAACCCTCCTCACGCCCTGAAGAGG----AGTT--AGAAAAGAG--GTCCTTGTCATTCTCACCTCTTATGGAAAATAGAAC-----------AGGAAATAATCA-TATCCTTTCTTCCCACCCTTCTCCTGTGATTTAGGATTTCTGACAAAGATGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30066303 600 - 170955103 CTCCAGCCCCTTCCTTCCCTCTCTTCTGCCTGATAGAGGAAAGAGGAAGAGGAGGGTGAACAGAGATCCTGGAATTATGACTTGCTGCTATTCC--AACCCAGCCTCCTGGGTTCCCCCAGTCCTCATTTTTCCTCCCAATACCCACCCTTCTCTCTCAAGGGATCTAGT-CAGCTTGGTCCCAGTCTCTTCCTTTTGTTCTCACTGCCAAACTGCCTGTCCTGGGATCTAGTTATC----TTGGC--CC--TGCACGCT--ACATGAGTAGCAAACACTT--ATTGGGTTTTCAACAGTCCCAGCTTTCACTGCCAGGGTCCCAGTCAGATTCCAGGAA--TTTACACCCTAGCTTTGCTTGCTAATCCTGGTTTAGAGCTATCCTACTAAAATATT----TA----ATCCTAAATCTTAGTCCTTGACTGTGAGATATGAGGTCTTACAGGAGACCTCAGGGCTCCC-AG-----------CCCTTCTC--CTCCTGCTAACCCTCCTCACGCCCTGAAGAGG----AGTT--AGAAAAGAG--GTCCTTGTCATTCTCACCTCTTATGGAAAATAGAAC-----------AGGAAATAATCA-TATCCTTTCTTCCCACCCTTCTCCTGTGATTTAGGATTTCTGACAAAGATGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     315613 600 +   1495729 CTCCAGCCCCTTCCTTCCCTCTCTTCTGCCTGATAGAGGAAAGAGGAAGAGGAGGGTGAACAGAGATCCTGGAATTATGACTTGCTGCTATTCC--AACCCAGCCTCCTGGGTTCCCCCAGTCCTCATTTTTCCTCCCAATACCCACCCTTCTCTCTCAAGGGATCTAGT-CAGCTTGGTCCCAGTCTCTTCCTTTTGTTCTCACTGCCAAACTGCCTGTCCTGGGATCTAGTTATC----TTGGC--CC--TGCACGCT--ACATGAGTAGCAAACACTT--ATTGGGTTTTCAACAGTCCCAGCTTTCACTGCCAGGGTCCCAGTCAGATTCCAGGAA--TTTACACCCTAGCTTTGCTTGCTAATCCTGGTTTAGAGCTATCCTACTAAAATATT----TA----ATCCTAAATCTTAGTCCTTGACTGTGAGATATGAGGTCTTACAGGAGACCTCAGGGCTCCC-AG-----------CCCTTCTC--CTCCTGCTAACCCTCCTCACGCCCTGAAGAGG----AGTT--AGAAAAGAG--GTCCTTGTCATTCTCACCTCTTATGGAAAATAGAAC-----------AGGAAATAATCA-TATCCTTTCTTCCCACCCTTCTCCTGTGATTTAGGATTTCTGACAAAGATGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     413490 602 -    863181 CTCCAGCCCCTTCCTTCCCTCTCTTCTGCCTGATAGAGGAAAGAGGAAGAGGAGGGTGAACAGAGATCCTGGAATTGTGACTTGCTGCTATTCC--AACCCAGCCTCCTGGGTTCCCCCAGTCCTCATTTTTCCTCCCAATACCCACCCTTCTCTCTCAAGGGATCTAGT-CAGCTTGGTCCCAGTCTCTTCCTTTTGTTCTCACTGCCAAACTGCCTGTCCTGGGATCTAGTTATC----TTGGC--CC--TGCACGCT--ACATGAGTAGCAAACACTTAAATTGGGTTTTCAACAGTCCCAGCTTTCACTGCCAGGGTCCCAGTCAGATTCCAGGAA--TTTACACCCTAGCTTTGCTTGCTAATCCTGGTTTAGAGCTATCCTACTAAAATATT----TA----ATCCTAAATCTTAGTCCTTGACTGTGAGATATGAGGTCTTACAGGAGACCTCAGGGCTCCC-AG-----------CCCTTCTC--CTCCTGCTAACCCTCCTCACGCCCTGAAGAGG----AGTT--AGAAGAGAG--GTCCTTGTCATTCTCACCTCTTATGGAAAATAGAAC-----------AGGAAATAATCA-TATCCTTTCTTCCCACCCTTCTCCTGTGATTTAGGATTTCTGACAAAGATGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29565583 602 -  71996105 CTCCAGCCCCCTCCTTCCCTCTCTTCTGCCTGATAGAGGAAAGAGGAAGAGGAGGGTGAACAGAGATCCTGGAATTATGACTTGCTGCTATTCC--AACCCAGCCTCCTGGGTTCCCCCAGTCCTCATTTTTCCACCCAATACCCACCCTTCTCTCTCAAGGGATCTAGT-CAGCTTGGTCCCAGTCTCTTCCTTTTGTTCTCACTGCCAAACTGCCTGTCCTGGGATCTAGTTATC----TTGGC--CC--TGCACGCT--ACATGAGTAGCAAACACTTAAATTGGGTTTTCAACAGTCCCAGCTTTCACTGCCAGGGTCCCAGTCAGATTCCAGGAA--TTTACACCCTAGCTTTGCTTGCTAATCCTGGTTTAGAGCTATCCTACTAAAATATT----TA----ATCCTAATTCTTAGTCCTTGACTGTGAGATATGAGGTCTTACAGGAGACCTCAGGGCTCCC-AG-----------CCCTTCTC--CTCCTGCTAACCCTCCTCACGCCCTGAAGAGG----AGTT--AGAAAAGAG--GTCCTTGTCATTCTCACCTCTTATGGAAAATAGAAC-----------AGGAAATAATCA-TATCCTTTCTTCCCACCCTTCTCCTGTGATTTAGGATTTCTGACAAAGATGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     249390 602 -    735854 CTCCAGCCCCCTCCTTCCCTCTCTTCTGCCTGATAGAGGAAAGAGGAAGAGGAGGGTGAACAGAGATCCTGGAATTATGACTTGCTGCTATTCC--AACCCAGCCTCCTGGGTTCCCCCAGTCCTCATTTTTCCTCCCAATACCCACCCTTCTCTCTCAAGGGATCTAGT-CAGCTTGGTCCCAGTCTCTTCCTTTTGTTCTCACTGCCAAACTGCCTGTCCTGGGATCTAGTTATC----TTGGC--CC--TGCACGCT--ACATGAGTAGCAAACACTTAAATTGGGTTTTCAACAGTCCCAGCTTTCACTGCCAGGGTCCCAGTCAGATTCCAGGAA--TTTACACCCTAGCTTTGCTTGCTAATCCTGGTTTAGAGCTATCCTACTAAAATCTT----TA----ATCCTAAATCTTAGTCCTTGACTGTGAGATATGAGGTCTTACAGGAGACCTCAGGGCTCCC-AG-----------CCCTTCTT--CTCCTGCTAACCCTCCTCACGCCCTGAAGAGG----AGTT--GGAAGAGAG--GTCCTTGTCATTCTCACCTCTTATGGAAAATAGAAC-----------AGGAAATAATCA-TATCCTTTCTTCCCACCCTTCTCCTGTGATTTAGGATTTCTGACAAAGATGGC
i manLeu1.NW_012107142v1   C 0 I 1447
s colAng1.NW_012115577v1     203663 602 -   1829203 CTCCAGCCCCCTCCTTCCCTCTCTTCTGCCTGATAGAGGAAAGAGGAAGAGGAGGGTGAACAGAGATCCTGGAATTCTGACTTGCTGCTATTCC--AACCCAGCCTCCTGGGTTCCCCTAGTCCTCATTTTTCCTCCCAATACGCACCCTTCTCTCTCAAGGGATCTAGT-CAACTTGGTCCCAGTCTCTTCCTTTTGTTCTCACTGCCAAACTACCTGTCCTGGGATCTAGTTATC----TTGGC--CC--TGCATGCT--ACATGAGTAGCAAACACTTAAATTGGGTTTTCAACAGTCCCAGCTTTCACTGCCAGGGTCCCAGTCAGATTCCAGGAA--TTTACACCCTAGCTTTGCTTGCTAATCCTGGTTTAGAGCTATCCTACTAAAATATT----TA----ATCCTAATTCTTAGTCCTTGACTGTGAGATATGAGGTCTTACAGGAGACCTCAGAGCTCCC-AG-----------CCCTTCTC--CTCCTGCTAACCCTCCTCACGCCCTGAAGAGG----AGTT--AGAAAAGAG--GTCCTTGTCATTCTCACCTCTTATGGAAAATGGAAC-----------AGGAAATAATCA-TATTCTTTCTTCCCACCCTTCTCCTGTGATTTAGGATTTCTGACAAAGATGGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30376127 605 + 171630274 CTCCAGCCCCTTCCTTCCCTCTCTTTTGCCTGATAGAGGGAAGAGGAAGAGAAGAGTGGACAGAGATCCTGGAATTCTGACTTGCTGCTATTCCAGAACCCAGGCTCCTGGGTTCCCCTAGTCCTCATTTTTCCTCCCAATACTCACCCTTCTCTCTCGAGGGATCTAGG-CACCCTGGTCCCAGTCTCTTCCTTTTGTTCTCACTGCCAAACTGCCTGTCCTGGGATCTAGTTATC----CTGGC--CC--TGCACTCTCAACTTGAGTAGTGAACACTTAAATTGGGTTTTCAACAATCCCAGCTTTCACTGCCAGGGCCCCAGTCAGATTCCAGGAA--TTCGCACTCTAGCTATGCTTGCTAATCCTGGTTTAGAGCTATCCCACTAAAATAGT----TA----ATCC-AATTCTTAGTTCTTGCCTGTGAGATATGAGGTCTTACAGGAGACCTCAGGGCTCCC-AG-----------CCCTTCTC--CTTTTGCTAACCCTCCTCATGCCCTCAAGAGG----AGTT--AGGAGAGAG--GTCCTTGCCATTCTCACCTCTAATGGAAAATGGAAC-----------GAGAAATAATCA-TATCCTGTCTTCCCACCCTTCTCCTGTGATTTAGGATTTCTGACAAAGCTGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           199497 605 +    515838 CTCCAGCCCCTTCCTTCCCTCTCTTCTGCCTGATAGAGGGAAGAGGAAGAGAAGAGTGGACAGAGATCCTGGAATTCTGACTTGCTGCTATTCCAGAACCCAGGCTCCTGGGTTCCCCTAGTCCTCATTTTTCCTCCCAGTACTCACCCTTCTCTCTCGAGGGATCTAGG-CACCCTGGTCCCAGTCTCTTCCTTTTGTTCTCACTGCCAAACTGCCTGTCCTGGGATCTAGTTATC----CTGGC--CC--TGCACTCTCAACTTGAGTAGCGAACACTTAAATTGGGTTTTCAACAATCCCAGCTTTCACTGCCAGGGTCCCAGTCAGATTCCAGGAA--TTCGCACCCTAGCTATGCTTGCTAATCCTGGTTTAGAGCTATCCCACTGAAATATT----TA----ATCC-AATTCTTAGTTCTTGCCTGTGAGATATGAGGTCTTACAGGAGACCTCGGGGCTCCC-AG-----------CCCTTCTC--CTTTTGCTAACCCTCCTCATGCCCTCAAGAGG----AGTT--AGAAGAGAG--GTCCTTGCCATTCTCACCTCTAATGGAAAATGGAAC-----------GAGAAATGATCA-TATCCTTTCTTCCCACCCTTCTCCTGTGATTTAGGATTTCTGACAAAGCTGGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     831590 609 -   1771730 CTCCAGCCCCTTCCTTCCCTCTCTTCTGCCTGATAGAGGGAAGAGGAAGAGAAGAGTGGACAGAGATCCTGGAATTCTGACTTGCTGCTATTCCAGAACCCAGGCTCCTGGGTTCCCCTAGTCCTCATTTTTCCTCCCGATACTCACCCTTTTCTCTCGAGGGATCTAGG-CACCCTGGTCCCAGTCTCTTCCTTCTGTTCTCACTGCCAAACTGCCTGTCCTGGGATCTAGTTATC----CTGGC--CC--TACACTCTCAACTTGAGTAGTGAACACTTAAATTGGGTTTTCAACAATCCCAGCTTTCACTGCCAGGGTCCCTGTCAGATTCCAGGAA--TTCGCACCCTAGCTATGCTTGCTAATCCTGGTTTAGAGCTATCCCACTAAAATATT----TA----ATCC-AATTCTTAGTTCTTGCCTGTGAGATATGAGGTCTTACAGGAGACCTCAGGGCTCCC-AG-----------CCCTTCTC--CTTTTGCTAACCCTCCTCATGCCCTCAAGAGGAGTTAGTT--AGAAGAGAG--GTCCTTGCCATTCTCACCTCTAATGGAAAATGGAAA-----------GAGAAATAATCA-TATCCTTTCTTCCCACCCTTCTCCTGTGATTTAGGATTTCTGACAAAGCTGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     317397 602 -    383796 CTCCAGCCCCTTCCTTCCCTCTCTTCTGCCTGATAGAGGGAAGAGGAAGAGAAGAGTGGACAGAGATCCTGGAATTCTGACTTGCTGCTATTCCAGAACCCAGGCTCCTGGGTTCCCCTAGTCCTCATTTTTCCTCCCAGTACTCACCCTTCTCTCTCGAGGGATCTAGG-CACCCTGGTCCCAGTCTCTTCCTTTTGTTCTCACTGCCAAACTACCTGTCCTGGGATCTAGTTATC----CTGAC--CC--TGCACTCTCAAATTGAGTAGCGAACACTTAAATTGGGTTTTCAACAATCCCAGCTTTCACTGCCAGGGTCCCAGTCAGATTCCAGGAA--TTCGTACCCTAGCTATGCTTGCTAATCCTGGTTTAGAGCTATCCCACTAAAATATT----TA----ATCC-AATTCTTAGTTCTTGCCTGTGAGATATGAGGTCTTAC---AGACCTCAGGGCTCCC-AG-----------CCCTTCTC--CTTTTGCTAACCCTCCTCATGCCCTCAAGAGG----AGTT--AGAAGAGAG--GTCCTTGCCATTCTCACCTCTAATGGAAAATGGAAC-----------GAGAAATAATCA-TATCCTTTCTTCCTACCCTTCTCCTGTGATTTAGGATTTCTGACAAAGCTGGC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               296489 611 + 123392446 CACCCACCCCCTCCTTCCCTCACCTCTGCCTCATAGAGGGAAGAAAAAGAGGAGTGTGGACCGAGATCCTGGAATTCTGACTTGCTGCTATTCTAGAACCCAGGCTCCTGGGTTCCCCCAGTCCTCATTTCTCCTGCCAATACCCACCCTCCCCTCTCT-GGGATCCACG-AATCTTGGTCCCAGTCTCTTCC-TTTGTTCTCACTGCCAAACTGCCTGTCCTGGGATCT-GTTATC----TTGGC--CCCTTGCACTCTCAACTTAAGTAGCAAACACTTAAATTGGGTTTTCAATAGTCCCAGCTGTCACTGCCGGGGTCCCAATCAAATTCCAGGCA--ATCTCGCCCCAGCTATGCTTGTTAATCCTGGTTTAAAGCTCTTCCACTGAGGTATTTATGTA----ATCCTAGTTCCTAGTCCTTGCCTGTGGGCTATGAGTTCTTATGGGAGACC-CAGAGTTCCC-AG-----------TTCTTCCC--TTCCTGCCTGCCCCCTTCATGCCTTCAAGAGG----AGTT--AGGAGAGAGGGCTCTTTATCATTCTCACCTCTAATGGAAAATGGAAC-----------AAGAAAGTTCCATTGTCCTCTCTCCCTATCTTTCTCATGTTATCTAGCATTTATGACAAAACTGGC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     100487 612 -   1411461 CACCCACCCCCTCCTTCCCTCTCCTCTGCCTGATAGAGGGAAGAAGAAGAGGAATGTGGACAGAGATCCTGGAATTCTGACTTGCTGCTATTCTAGAACCCAGGCTCCTGGGTTCCCCCAGTCCTCATTTCTTCTGCCAATACCCACCCCCGTCTCTCTGGGGATCCAAGCCATCTTGGTCCCAGTCTCTTCCTTTTGTTCTCACTGCCAAACTGCCTGTCCTGGGATCTAGTTATC----TTGGC--CCC-TGCACTCTCAACTTAAGTAGCGAACACTTAAATTGGGTTTTCAATAGTCCCAGCTTTCACTGCCAGGGT-CCAGTCAGATTCCAGGCA--ATCTCGCCCCAGCTATGCTTGTGCATCCTGGTTTAGAGCTCTTCCACTGAGGTATTTATGTA----ATCCTAATTCTTAGCCCTTGCCTGTGGGCTCTGAGGTCTTACGGGAGACC-CAGGGTTTCC-AG-----------TTCTTCCC--CTGCTGCCTACCCCTCTCATGCCTTCAAGAGG----AGTT--AGGAGAGAGAGGTCTTTATCATTCTCACCTCTAATGGAAAATGGAAC-----------AAGAAATAGTCA-TGTCCTCTCTCCCTGTCCTTCTCATGTTATCTGGGATTTATGACAAAAGTGGC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           247523 592 +  18854210 CTCCAGCCCCCTCTTTCCCTCTGCTCTGCCTGATAGAGGGAAGAAGAAGAG-------------GATCCTGGAATTCTGACTTGCTGCTATTCCAGAACCCAGGCTCCTGGGTACCCCTAGTCCTCATTTCTCCTCCCAGTACCCACCCTCCTCTCTCCAGGGATCCAGG-CATCTTGGTCCCAGTCTCTTCCTTTTGTTCTCACTGCCAAACTGCCTGTCCTGGGATCTAGTTATC----TTGGC--CCC-TGCACCTC--ACATGAGTAGAAGACACTTAATTTGGGTTTTCACTAGTCCCAGCTTTCACTGCCAGGGTCCCAGTCAGATTCCAGGCA--ACCTCACCCCAGCTATGCTTGTTAATCCTGGTTTAGAGCTCTTCCACTAAAGTATTTATATA----ATCCTAATTCTTAGTCCTTGCCTATGGGATAGGAGATCTTACGGGAGACC-CAGGATTCCC-AG-----------TTCTTACC--GTCCTGCCTACCCACCTCATGCCTTCAAGAGG----AGTT--AGGAAAGAGATGTCTTTGTCATTATCAC--CTAATAGAAAACAGAAT-----------GAGAGATAGTCA-TATGTTCT---CCCATCCTTCTTATGTTATATAGGATTTATGACAAAACTGGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58037997 582 -  94987271 CTCCTGCCCCCTTCTTCCGTCTC--CTGAGTGATAGAG--AAGAGGAAGAGGAGGGTGGATACAGATCCTGGAATTCTGACTTGCTGCTGTTCCAGAACCCAGGCTTCTGGGTTCTCCCAGCCCC--TGCTTCCCTACAGTTTGCTCCCATGCCT-----GGGATCCAGG-CATCTTGGTCCCAGTCTATCCCTTTTGTTCTCACTGCCAAACTACCTGTCCTGGGATCCAG-TATC----TTGGCCACC--TGCACCCTCAGCTTGAGTCCCAAGCACTTCAACTGGGTTTTCAACGGTCCCAGCTTTCACTGCCAGGGCTCCAATCAGATGCCAGGCAATCTTGCACCCCAGTTCTGCGTATTAATCCTGGCTTATGGTTCTTCTACTGATGCAGT----T-----TTCCTAAATCTTAGTTCTTGCCTGTGGGATGTAAGGTTGTGT-GGAGACTATAGGGTTCCCTGG-----------CCCTTCTG--CTCCTCTTACCCCTTAT--GGCTCTCCAAAGG----AGTT--AG--GAGAG--GTCTTTGTCATTCACAC--CTAATGGAAAGTGGAACCAAAAAAAAAAAAAAAATAGCCA-TGTCCTG--------------------AATATAACATTTCTGACAAAGCTGGC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26291338 614 +  26524999 CTCCAGCCC--TTCTCCCTGCTCCTCTGCCTGACGGAGGGAAG----ATAGGAGGGTCCACAGAGATCCTGGAATTCTAACTTGCTGCTATTCCAGAGCCCAGACTTTTGGGTTCCCCCAGCCCTCGTTTCTCCTTCCAGTATTCATCCTCTGCTCTCCAGGGATTCAGG-TGTCACGGTCCTCGTCTCTCCCCTTCGTTCTCACTGCCAAACTACCTGTCCTAGGATCCAATTATCGTGTGTGGC--CCCTTGCATTCTTTCCTGGAGTCCCAAACGCTGAAATGGGGTTTTCAGCTGCCCCGGCTTTCACTGCCAGGGTCCCTGTCAGATTGGGGGCA--GT-GTTCCCCAGCTATGCCTGTTAATCCTGGCTCAGAGTTCTTCCAGTTACATATT----TATATCACCCGAAGTCCTCGTCCTTACCTGTGGGATCCAAGGTCTCCCAGGAGACCTGAGGGCTCCC-GGCAAGCTCCCGACCCTTCCCCTCTCCTGTCCTCCTCCCTCATGCCCTCCAGAGG----AGCTGAGGGAGAGAG--GTCTGTG-CTTTCTCATCTTTAATGGGAGATGCAAA-----------AGGAAACAGGTA-TGGCCT--CTTCTCACCCTTCTCATAAGATAAAGGATTGCCAACAC-------
i canFam3.chr35            C 0 C 0

a score=9555.000000
s hg38.chr6_GL000254v2_alt  1414064 1 +   4827813 T
s panTro5.chr6             30287333 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30518030 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     224909 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74897930 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115577v1     204265 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30376732 1 + 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           200102 1 +    515838 T
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     832199 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     317999 1 -    383796 T
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               297100 1 + 123392446 T
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     101099 1 -   1411461 T
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           248115 1 +  18854210 T
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58038579 1 -  94987271 T
i mm10.chr17               C 0 C 0
s canFam3.chr35            26291952 1 +  26524999 T
i canFam3.chr35            C 0 C 0
e manLeu1.NW_012107142v1     249992 1447 -    735854 I
e chlSab2.chr17            29566185 0 -  71996105 C
e cerAty1.NW_012002535v1     414092 0 -    863181 C
e macNem1.NW_012012100v1     316213 0 +   1495729 C
e macFas5.chr4             30066903 0 - 170955103 C
e rheMac8.chr4             30771766 0 + 172585720 C

a score=7433499.000000
s hg38.chr6_GL000254v2_alt  1414065 497 +   4827813 -TGAGATTGGTCACTTAGAGCCGACTGTCTCCTCTGCCTTTTGTTTTTCAGCTTCAGAGACAGATCCAATATAGTCCCAGGGACCTGGGTCTCTGGGAGAGGAAGGAAGAGGGAGGGAGCAAAGAGATTGGGGTATG-TCCCCTGTAGTACACTCTTACCTCTTACTTCCTAGACTTTGATTTCTCCGGCAGCCCAGATGTTCAGTTCTCTTGGCCCCTCTCTACCCCTTACTGGGATCTGGTTTTCATTTTCCGGTCCT-TT-TGCCATACACAGTT-ACAGAGATCAGTCAAATCCATACCACCACTGAGATCTCATTTATTGCCACAGATGCACAAAATAAATAACCCAAAATCACAAAATGTGTTAAATATGGGCCCATTTATACT---TATGGGGAAGGGTGTGAGACTATACACAA-----GGATGAGTTTGGAGATGTCTGAAGTATTCCCAGGTTGAGGAGGAGAGAGGGGAAATAGCACCATTGGTTCCTTTCCGTGAGTA
s panTro5.chr6             30287334 495 + 175400573 -TGAGATTGGTCACTTAGAGCCAACTGTCTCCTCCGCCTTTTGTTTTTCAGCTTCAGAGACAGATCCAATATAGTCCCAGGGACCTGGGTCTCTGGGAGAGGAAGGAAGAGGGAGGGAGCAAAGAGATTGGGGTATG-TCCCCTGTAGTACACTCTTACCTCTTACTTCCTAGACT--GATTTCTCCGGCAGCCCAGATGTTCAGTTCTCTTGGCCCCTCTCTACCCCTTACTGAGATCTGGTTTTCATTTTCCGGTCCT-TT-TGCCATACACAGTT-ACAGAGATCAGTCAAATCCATACCACCACTGAGATCTCATTTATTGCCACAGATGCACAAAATAAATAACCCAAAATCACAAAATGTGTTAAATATGGGCCCATTTATACT---TATGGGGAAGGGTGTGAGACTATACACAA-----GGATGAGTTTGGAGATGTCTGAAGTATTCCCAGGTTGAGGAGGAGAGAGGGGAAATAGCACCATTGGTTCCTTTCTGTGAGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30518031 495 + 173848474 -TGAGATTGGTCACTTAGAGCCAACTGTCTCCTCCGCCTTTTGTTTTTCAGCTTCAGAGACAGATCCAATATAGTCCCAGGGACCTGGGTCTCTGGGAGAGGAAGGAAGAGGGAGGGAGCAAAGAGATTGGGGTATG-TCCTCTGTAGTACACTCTTACCTCTTACTTCCTAGACTTTGATTTCTCCAGCAGCCCAGATGTTCAGTTCTCTTGGCCCCTCTCTACCCCTTACTGGGATCTGGTTTTCATTTTCCGGTCCT-TT-TGCCATACACAGTTAACAGAGATCAGTTAAATCCATACCACCACTGAGATCTCATTTATTGCCACAGATGCACAAAATAAATAACCCAAAATCACAAAATGTGTTAAATATGGGCCCATTTATACT---TATGGGGAAGGGTGTGAGACTATACACAA-----GGATGAGTTTGGAGATGTCTGAAGTATTCCCAGGTT---GAGGAGAGAGGGGAAATAGCACCATTGGTTCCTTTCTGTGAGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     224910 497 +   2037526 -TGAGATTGGTCACTTAGAGCCAACTGTCTCCTCCGCCTTTTGTTTTTCAGCTTCAGAGACAGATCCAATATAGTCCCAGGGACCTGGGTCTCTGGGAGAGGAAGGAAGAGGGAGGGAGCAAAGAGATTGGGGTATG-TCCCCTGTAGTACACTCTTACCTCTTACTTCCTAGACTTTGATTTCTCCGGCAGCCCAGATGTTCAGTTCTCTTGGCCCCTCTCTACCCCTTACTGGGATCTGGTTTTCATTTTCTGGTCCT-TT-TGCCATACACAGTT-ACAGAGATCAGTCAAATCCATACCACCACTGAGATCTCATTTATTGCCACAGATGCACAAAATAAATAACCCAAAATCACAAAATGTGTTAAATATGGGCCCATTTATACT---TACGGGGAAGGGTGTGAGACTATACACAA-----GGATGAGTTTGGAGATGTCTGAAGTATTCCCAGGTTGAGGAGGAGAGAGGGGAAATAGCACCATTGGTTCCTTTCTGTGAGTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74897931 496 + 122973662 -TGAGATTGGTCACTTAGAGCCAATTATCTCCTCCACCTTTTGTTTTTCAGCTTCAGAGACAGATCCAATATAGTCCCAGGGACCTGGGTCTCTGGAAGAGGAAGGAAGAGGGAGGGAGCAAAGAGATTGGGGTATG-TCCCCTGTAGTACATTCTTACCTCTTACTTCCTAGACTTTGATTTCTCTGCCAGCCCAGATGTTCAGTTCTCTTGG-CCCTCTCTACCCCTTACTGGGATCTGGTTTTCATTTTCTGGTCCT-TT-TGCCATACACAGTT-GCAGAGATCAGTCAAATCCATACCACCACTGAGATCTCATTTATTGCCACAGATGCACAAAATAAATAACCCAAAATCACAAAATGTGTTAAATATGGGCCCATTTATACT---TATGGGGGAGGGTGTGAGACTATACACAA-----GGATGAGTTTGGAGATGTCTGAAGTATTCCCAGGTTGAGGAGGAGAGAGGGGAAATAGCACCATTGGTTCCTTTCTGTGACTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30771766 494 + 172585720 -TGAGATTGGTCACTTAGAGCCAACTATCTCCTCCGCCTTTTGTTTTTCAGCTTCAGAGACAGATCCAATATAGTCCCAGGGACCTGAGTCTCTAGGATAGGAAGGAAGAGGGAAGGAGCAAAGAGATTGGGGTATA-TCCCCTGTGCTACACTCCTACCTCTTAATTCCTAGACTTTGATTTCTCTGCCAGCCCAGATGTTCAGTTCTCTTGG-CCCTCTCTACCCCTTACTGGGATTTGGTTTTCATTTTCCAGTCCT-TT-TGCCATACACAGTT-GCAGAGATCAGTCAAATCCGTACCACCGCTGAGATCTCATTTATTGCCACAGGTGCACAAAATAAATAACCCAAAATCACAAAATGTGTTAAATATGGGCCCATTTATACA---TATGGGGAAGGGTGTGAGACTATACACAA-----GGATGAGTTTT--GATATCTGAAGTATTCCCAGGTTGAGGAGGAGAGAGGGGAAGTAGCACCATTGGCTCCTTTCTGTGAGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30066903 494 - 170955103 -TGAGATTGGTCACTTAGAGCCAACTATCTCCTCCGCCTTTTGTTTTTCAGCTTCAGAGACAGATCCAGTATAGTCCCAGGGACCTGAGTCTCTAGGATAGGAAGGAAGAGGGAAGGAGCAAAGAGATTGGGGTATA-TCCCCTGTGCTACACTCTTACCTCTTAATTCCTAGACTTTGATTTCTCTGCCAGCCCAGATGTTCAGTTCTCTTGG-CCCTCTCTACCCCTTACTGGGATTTGGTTTTCATTTTCCAGTCCT-TT-TGCCATACACAGTT-GCAGAGATCAGTCAAATCCGTACCACCGCTGAGATCTCATTTATTGCCACAGGTGCACAAAATAAATAACCCAAAATCACAAAATGTGTTAAATATGGGCCCATTTATACA---TATGGGGAAGGGTGTGAGACTATACACAA-----GGATGAGTTTT--GATATCTGAAGTATTCCCAGGTTGAGGAGGAGAGAGGGGAAGTAGCACCATTGGCTCCTTTCTGTGAGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     316213 494 +   1495729 -TGAGATTGGTCACTTAGAGCCAACTATCTCCTCCGCCTTTTGTTTTTCAGCTTCAGAGACAGATCCAGTATAGTCCCAGGGACCTGAGTCTCTAGGATAGGAAGGAAGAGGGAAGGAGCAAAGAGATTGGGGTATA-TCCCCTGTGCTACACTCTTACCTCTTAATTCCTAGACTTTGATTTCTCTGCCAGCCCAGATGTTCAGTTCTCTTGG-CCCTCTCTACCCCTTACTGGGATTTGGTTTTCATTTTCCAGTCCT-TT-TGCCATACACAGTT-GCAGAGATCAGTCAAATCCGTACCACCGCTGAGATCTCATTTATTGCCACAGGTGCACAAAATAAATAACCCAAAATCACAAAATGTGTTAAATATGGGCCCATTTATACA---TATGGGGAAGGGTGTAAGACTATACACAA-----GGATGAGTTTT--GATATCTGAAGTATTCCCAGGTTGAGGAGGAGAGAGGGGAAGTAGCACCATTGGCTCCTTTCTGTGAGTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     414092 496 -    863181 -TGAGATTGGTCACTTAGAGCCAACTATCTCCTCCGCCTTTTGTTTTTCAGCTTCAGAGACAGATCCAATATAGTCCCAGGGACCTGAGTCTCTAGGATAGGAAGGAAGAGGGAAGGAGCAAAGAGATTGGGGTATA-TCCCCTGTGCTACACTCCTACCTCTTAATTCCTAGACTTTGATTTCTCTGCCAGCCCAGATGTTCAGTTCTCTTGG-CCCTCTCTACCCCTTACTGGGATTTGGTTTTCATTTTCCAGTCCT-TT-TGCCATACACAGTT-GCAGAGATCAGTCAAATCCGTACCACCGCTGAGATCTCATTTATTGCCACAGATGCACAAAATAAATAACCCAAAATCACAAAATGTGTTAAATATGGGCCCATTTATACA---TATGGGGAAGGGTGTGAGACTATACACAA-----GGATGAGTTTGGAGATATCTGAAGTATTCCCAGGTTGAGGAGGAGAGAGGGGAAGTAGCACCATTGGCTCCTTTCTGTGAGTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29566185 496 -  71996105 -TGAGATTGGTCACCTAGAGCCAACTATCTCCTCCGCCTTTTGTTTTTCAGCTTCAGAGACAGATCCAATATAGTCCCAGGGACCTGAGTCTCTGGGATAGGAAGGAAGAGGGAAGGAGCAAAGAGATTGGGGTATA-TCCCCTGTGCTACACTCTTACCTCTTAATTCCTAGACTTTGATTTCTCTGCCAGCCCAGATGTTCAGTTCTCTTGG-CCCTCTCTACCCCTTACTGGGATTTGGTTTTCATTTTCCAGTCCT-TT-TGCCATACACAGTT-GCAGAGATCAGTCAAATCCATACCACCGCTGAGATCTCATTTATTGCCACAGATGCACAAAATAAATAACCCAAAATCACAAAATGTGTTAAATATGGGCCCATTTATACA---TATGGGGAAGGGTGTGAGACTATACATAA-----GGATGAGTTTGGAGATGTCTGAAGTATTCCCAGGTTGAGGAGGAGAGAGGGGAAGTAGCACCATTGGCTCCTTTCTGTGAGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     251439 496 -    735854 -TGAGATTGGTCACTTAGAGCCAACTATCTCCTCCGCCTTTTGTTTTTCAGCTTCAGAGACAGATCCAATATAGTCCCAGGGACCTGAGTCTCTGGGATAGGAAGGAAGAGGGAAGGAGCAAAGAGATTGGGGTATA-TCCCCTGTGCTACACTCCTACCTCTTAATTCCTAGACTTTGATTTCTCTGCCAGCCCAGATGTTCAGTTCTCTTGG-CCCTCTCTACCCCTTACTGGGATTTGGTTTTCATTTTCCAGTCCT-TT-TGCCATACACAGTT-GCAGAGATCAGTCAAATCCGTACCACCGCTGAGATCTCATTTATTGCCACAGATGCACAAAATAAATAACCCAAAATCACAAAATGTGTTAAATATGGGCCCATTTATACA---TATGGGGAAGGGTGTGAGACTATACACAA-----GGATGAGTTTGGAGATGTCTGAAGTATTCCCAGGTTGAGGAGGAGAGAGGGGAAGTAGCACCATTGGCTCCTTTCTGTGAGTA
i manLeu1.NW_012107142v1   I 1447 C 0
s colAng1.NW_012115577v1     204266 496 -   1829203 -TGAGATTGGTCACTTAGAGCCAACTATCTCCTCCACCTTTTGTTTTTCAGCTTCAGAGACAGATCCAATATAGTCCCAGGGACCTGAGTCTCTGGGATAGGAAGGAAGAGGGAAGGAGCAAAGAGATTGGGGTATA-TCCCCTGTACTACACTCTTACCTCTTACTTCCTAGACTTTGATTTCTCTGCCAGCCCAGATGTTCAGTTTTCTTGG-CCCTCTCTACCCCTTACTGGGATTTGGTTTTCATTTTCCAGTCCT-TT-TGCCATACACAGTT-GCAGAGATCAGTCAAATCCATACCACCACTGAGATCTCATTTATTGCCACAGATGCACAAAATAAATAACCCAAAATCACAAAATGTGTTAAATATGGGCCCATTTATACA---TATGGGGAAGGGTGTGAGACTATACACAA-----GGATGAGTTTGGAGATGTCTGAAGTATTCCCAGGTTGAGGAGGAGAGAGGGGAAGTAGCACCATTGGCTCCTTTCTGTGAGTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30376733 478 + 171630274 -TGAGATTGATCACTTAGAGCCAACTATCTACTCAGCCTTTTGTTTTTCACCTTCAGAGACAAATCCAATATAGTCCCAGGGACCTGGG---------------GGGAAAGGGAGGGAGCAAAGAGATGGGGGTATA-TCCCCTATACTACACTCTTACCGCTTACTTCCTAGGCTTTGATTTCTCTACCAGTCCAGATGATCAGTTCTCTTGG-CCCTCCCTACCCCTTACTGGGATCTGGTTTTCATTTTCCAGTC---CT-TGCCATACACAATT-GCAGAGATCAGTCAAATCCATACCACCACTGAGATCTCATTTATTGCCACAGATGCACAAAATAAATAACCCAAAATCACAAAATGTGTTAAATATGGGCCCATTTATACA---TATGGGGAAGGGCATGAGACTATACACAA-----GGATGAGTTTGGGGATGTCTGAAGTATTCCCAGGTTGAGGA-GGGAGAAGGGAAGTAGCACCATTGGTTTCTTTCTGTAAATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           200103 481 +    515838 -TGAGATTGATCACTTAGAGCCAACTATCTACTCAGCCTTTTGGTTTTCACCTTCAGAGACAAATCCAAGACAGTCCCAGGGACCTGGG---------------GGGAAAGGGAGGGAGCAAAGAGATGGGGGTGTA-TCCCCTGTACTACACTCTTACCTCTTACTTCCTAGGCTTTGATTTCTCTA-CAGTCCAGATGTTCAGTTCTCTTGG-CCCTCCCTACCCCTTACTGGGATCTGGTTTTCATTCTCCAGTCCTTCT-TGCCATACACAACT-GCAGAGATCAGTCAAATCCATACCACCACTGAGATCTCATTTATTGCCACAGATGCACAAAATAAATAACCTAAAATCACAAAATGTGTTAAATATGGGCCCATTTATACA---TACGGGGAAGGGCGTGAGACTATACACAA-----GGATGAATTTGGGGATGTCTGAAGTATTCCCAGGTTGAGGAGGGGAGAAGGGAAGTAGCACCGTTGGTTTCTTTCTGAGAGTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     832200 480 -   1771730 -TGAGATTGATCACTTAGAGCCAACTATCTACTCAGCCTTTTGTTTTTCACCTTCAGAGACAAATCCAATATAGTCCCAGGGACCTGGG---------------GGGAAAGGGAGGGAACAAAGAGATGGGGGTATA-TCCCCTATACTACACTCTTACCTCTTACTTCCTAGGCTTTGATTTCTCTACCAGTCCAGATGTTCAGTTCTCTTGG-CCCTCCCTACCCCTTACTGGGATCTGGTTTTCATTTTCCAGTCCTTCT-TGCCATACACAATT-GCAGAGATCAGTCAAATCCATACCGCCACTGAGATCTCATTTATTGCCACAGATGCACAAAATAAATAACCCAAAATCACAAAATGTGTTAAATATGGGCCCATTTATACATTTTACGGAGAAGGGCGTGAGACTATACAC-A-----GGATGAGTTTGGGGATGTCTGAAGTATTCCCAGGTTGAGGAGGGGAGAAGGGAAGTAGCACCTTTGGTTTCTTTCTG----TA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     318000 482 -    383796 -TGAGGTTGATCACTTAGAGCCAACTATCTACTCAGCCTTTTGTTTTTCACCTTCAGAGACAAATCCAAAATAGTCCCAGGGACCTGGG---------------GGGAAAGAGAGGGAGCAAAGAGATGGGGGTATA-TCCCCTATACTACACTCTTACCTCTTACTTACTAGGCTTTGATTTCTCTGCCAGTCCACATGTTCAGTTCTCTTGG-CCCTCCCTACCCCTTACTGGGATCTGGTTTTCATTTTCCAGTCCTTCT-TGCCATACACAATT-GCAGAGATCAGTCAAATCCATACCACCATTGAGATCTCATTTATTGCCACAGATGTACAAAATAAATAACCCAAAATCACAAAATGTGTTAAATATGGGCCCATTTATACA---TATGGGGAAGGACGTGAGCGTATACACAA-----GGATGAGTTTGGGGATGTCTGAAGTATTCCCAGGTTGAGGAGGGGAGAAGGGAAGTAGCACCATTGATTTCTTTCTGTGAGTA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               297101 485 + 123392446 -TGAGACAGGTCACTTAGAGCCAACTATCTCCTCAA-ATTTGGTCTTTCAGCTTCACAGACAGATCCAACATAGTTCCAGGGGCCTGGGTACCTAAGAGAGAAAAG---AGGGAGGGAGCAAAGGGATAGGG--GTG-TCCCCTGCACTGCACTCTCACCCCTTCCTTCCTACCCTTTGATGTCTCTGCCAGCCGAGGTGTTCAGCTCTTTCAG-CCCTCCCCACCCCTTCCTGGGATCTGATGGTTGTTTTCCAGTCCT-CT-TCCCATGCACAGTT-GGAGAGATCAGTCAAATCCATATGGCCACTGAGATCTCATTTATTGCCACAGATGCACAAAATAAATAACCCAACATCACAAAATGTGTTAAATATGGGCCCATTTATACA---TATGGGGAAAGATATGAGACTATGTACAA-----AGATGAGTTTGGGGATGTCTAGGCCATTCCCAGGTGGAGGAGAGGAGAGG-----CAGCACCATTGGTTCCTTTCTGTGAGTA
i micMur3.chr6             C 0 I 91
s proCoq1.NW_012149775v1     101100 494 -   1411461 -TAAGACAGGTCACTTAGAGCCAACTATCTCCTCAA-ATTCGGTCTTTCAGCTTCACAGACAGATCCAACATAGTCCCAGGGGCCTGGGTCCCTAAGAGAGAAAGGAAAAGGGAGGGAGCAAAGGGATGGGGGTGTG-TTCCCTACACTGCACTCTCACCCCTTCCTTCCTACCCTTTGATGTCTCTGCCAGCCAACATGTTCAGCTCTGTCAG-CCCT-CCCACCCCTTACTGGGATCTGGTAATTGTTTTCCGGTCCT-CT-TCCCATGCACAGTT-GCAGAGATCGGTCAAATCCATACCACCACTGAGGTCTCATTTATTGCCACAGATGCACAAAATAAATAACCCAACATCACGAAATGTGTTAAATATGGGCCCATTTATACA---TATGGGGAAAGATATGAGACTATGTACCAAACTCAGATGAGTTTGGGGATGTCTAGGCCATTCCCAGGTTGAGGAGAGGAGAGG-----TAGCACCACTGGTTCCTTTCTGTGAGTA
i proCoq1.NW_012149775v1   C 0 I 106
s otoGar3.GL873550           248116 484 +  18854210 -TGAGACTGTTCAGTTAGAGCCAACTATCTCCTCAG-ATTTGATCTTTCAGCTTCAAAGACAAATCCAGTGTAGTCCCAGGGACCTGAGTCCCTAAGAGAGAAAGGAAAAGGGAGAGAGCAAAGGGATGGG---GTA-TCCCCTACACTGCACTCTTACCCCTTCACTCCTAAGGTTTGATGTCTCAGCCAGCCCAGATGTTCAGCTCTCTCAC-CCTTCCCCAACCCTTAGTGGGATCTGGTGGTTATTTTCCAGTCCT-CT-TCCCATACACGGTT-GCAGAGATCAGTCAAATCCATACCACCAGTGAGATCTCATTTATTGCCACAGATGCACAAAATAAATAACCCAACGTCACAAAATGTGTTAAATATGGGCCCATTTATACA---TATGGGGAAAG-TAAGAGACTA--TACAA-----GGATGAGTTTGGGAATGTCTAAGCCATTCCCAGGTTGAGGAGAGAAGAGG-----TAGCACCATTGGTTCCTTTGTCTGAGTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58038580 456 -  94987271 --GAGACCACTGACTTAGAGCCAATGATTTTCTCAGCCTTTAATCTTTGAGCTTCAG---------CATTGGTGTCCTAGGGGCCTGGGTCCCTAAAAG-----GAAAGAGGGAGAAAGCAAAGAGATGAGGGGACAGGCCCCTGCAGTATGCTCCTACCCTTTCCTGCCTAGGCTTTGGTGTCT--GCCAACCCAGGTGTCTTGCTCTCTCAG-CCCTCCCCGGCTGGTGCTAGGATCTGGGTACTGCCCTCCAGGCCT-CT-GGCTGTGCACAGT--ACAGAAATCAGCAAAACCCATGGCACCACTTAGATCTCATTTATTGCCACAGATGCACAAAATAAATAACCCAACATTGCACAGTGTGTTAAATACAGGCCCATTTATACA---CA-AGGGAAGGATGGGAGACTATACAGAA-----TG------TTTGGGGTGCCTGAGTTGCTCCCGGGTTGAGGA--------AGGAGGTAGCACCATTAGTTCTTTTA--------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26291953 459 +  26524999 TGAAGACTGGTCACTTAGAGCCAACAATCTCCTCCGTCTTCTG-------GCATCAGAGACCAATCCTACACAGTCCCAGGGCCCTGGGTCCCTGAGAGAGGAAAGAAAATGCAGGGAGCACAGAGA-AGGGGCATG-TCCCAGACAGTACCCTCATCCTCCTGCCTTCCAA------------------AGCCCAGATGTCCAGCTCTCT--G-CCCTTCCCACTCCTTACTGGGATCTTGA---CATTTTCTAGGCCT-CTGTGCCATGCACAGTT-GCAGAGATGAGTCAAATCCATACCACCACTGAGATCTCATTTATTGCCACAGATGCACAAAATAAATAACCCAACATCACAAAACGTGTTTAATATGGGCCCATTTATACA---TATGTGGAAAGATGTGAAGCTATATACAA-----GGATGAGTTTGGGG--GTCTGGGCCATT-CCAGGTGGAGGAAAGGAGAGG-----TAGCACCATTTGTTCCTTACTATGAGCA
i canFam3.chr35            C 0 C 0

a score=1221937.000000
s hg38.chr6_GL000254v2_alt  1414562 111 +   4827813 TGTGCGGGGAGAAGTTTCAAGAAGGTTCTTATGGAAAAAAGGCTGTGAGCATAGAAAGCAGTCATA----GGAGGTTGGG-------GAACTAGCTTGTCCCTCCCCACCCCCAGATCCTGC
s panTro5.chr6             30287829 111 + 175400573 TGTGCGGGGAGAAGTTTCAAGAAGGTTCTTATGGAAAAAAGGCTGTGAGCATAGAAAGCAGTCATA----GGAAGTTGGG-------GAACTAGCTTGTCCCTCCCCACCCCCAGATCCCGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30518526 111 + 173848474 TGTGCGGGGAGAAGTTTCAAGAAGGTTCTTATGGAAAAAAGGCTGTGAGCATAGAAAGCAGTCATA----GGAGGTTGGG-------GAACTAGCTTGTCCCTCCCCACCCACAGATCCCGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     225407 111 +   2037526 TGTGCGGGGAGAAGTTTCAAGAAGGTTCTTATGGAAAAAAGGCTGTGAGCATAGAAAGCAGTCATA----GGAGGTTGGG-------GAACTAGCTTGTCCCTCCCCACCCCCAGATCCCGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74898427 111 + 122973662 TGTGCGGGGAGAAGTTTCAAGAAGGTTCTTATGGAAAAAAGGCTGTGAGCATAGAAAGCAGTCATA----GGAGGCTGGG-------GAACTAGCTTGTCCCTCCCCACCCCCAGATCCCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30772260 111 + 172585720 TGTGCAGGGAGAAGTTTCAAGAAGGTTCTTATGGGAAAACGGCTGTGAGCATAGAAAGCAGCCATA----GGAGGTTGGG-------GAACTAGCTTGTCCCTCCCCACCCCGAGATCCCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30067397 111 - 170955103 TGTGCAGGGAGAAGTTTCAAGAAGGTTCTTATGGAAAAACGGCTGTGAGCATAGAAAGCAGCCATA----GGAGGTTGGG-------GAACTAGCTTGTCCCTCCCCACCCCGAGATCCCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     316707 111 +   1495729 TGTGCAGGGAGAAGTTTCAAGAAGGTTCTTATGGAAAAACGGCTGTGAGCATAGAAAGCAGCCATA----GGAGGTTGGG-------GAACTAGCTTGTCCCTCCCCACCCCGAGATCCCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     414588 111 -    863181 TGTGCAGGGAGAAGTTTCAAGAAGGTTCTTATGGAAAAAAGGCTGTGAGCATAGAAAGCAGCCATA----GGAGGTTGGG-------GAACTAGCTTGTCCCTCCCCACCCCGAGATCCCCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29566681 111 -  71996105 TGTGCAGGGAGAAGTTTCAAGAAGGTTCTTATGGAAAAAAGGCTGTGAGCATAGAAAGCAGTCATA----GGAAGTTGGG-------GAACCAGCTTGTCCCTCCCCACCCCAAGATCCCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     251935 111 -    735854 TGTGCAGGGAGAAGTTTCAAGAAGGTTCTTATGGAAAAAAGGCTGTGAGCATAGAAAGCAGTCATA----GGAGGTTGGG-------GAACTAGCTTGTCCCTCCCCACCCCGAGATCCCCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     204762 111 -   1829203 TGTGCAGGGAGAAGTTTCAAGAAGGTTCTTATGGAAAAAAGGCTGTGAACATAGAAAGCAGTCATA----GGAGGTTGGG-------GAACTAGCTTGTCCCTCCCCACCCTGAGATCCCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30377211 109 + 171630274 TGTGCGCAGAGAAGTTTCAAGAAAGTTCTTATGGAAAAAAGGCTGTGAGCATAGAAAGCAGTCATA------AGACAAGG-------GAACTAGCTTGTCCCTCTCCACCCCCTGATCCCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           200584 107 +    515838 TGTGCGCAGAGAAGTTTCAAGAAAGTTCTTATGGAAAAAAGGCTGTGAGCATAGAAAGCAGTCATA----GGAGGTTAGG-------GAACTAGCTTGTCC----CCACTCCCTGATCCCCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     832680 111 -   1771730 TGTCTGCAGAGAAGTTTCAAGAAAGTTCTTATGGAAAAAAGGCTGTGAACATAGAAAGCAGTCACA----GGAGGTTGGG-------GAACTAGCTTGTCCCTCCCCACCCCCTGATCGCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     318482 110 -    383796 TGCGCACAGAGAAGTTTCAAGGAGGTTCTTACGGAAAAAAGGCTGTGAGCATAGAAAGCAGTCATA----GGAGGTTGGG-------GAACTAGCTTGTCCCTCCCCACCCCC-AATCCCCC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           248600  94 +  18854210 AATGCAGGGAG---------------TTTTATGGGAAA--GGCTGTGAGCATAAAAAGTAGTCACA----GGAGA--GGGTAAAGTAAAACTGGCTTGACCCTCCCTGCCCCCCACT-----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58039036 108 -  94987271 TGTGCAAGATAAAGTTCCAAGAGGGTGTTCAATGGGAAAAGGCCACGAGCAGAGGAAACAGTCATAAATGAAAGGTTGAGTAT----AGACTGGCTTG--CATACATATCCTAG--------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26292412  89 +  26524999 TGTGCAGGGGG-AGCCCTAACAAGGTCCCAAAGTGGAAAAGACTATGAGCATAGGAAGCAGTCACC----ATGGAGTAGG-------G--CTGGCCTATCCCC-------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               297586  91 + 123392446 I
e proCoq1.NW_012149775v1     101594 106 -   1411461 I

a score=121841.000000
s hg38.chr6_GL000254v2_alt  1414673 12 +   4827813 AAAAGAGGTACA
s panTro5.chr6             30287940 12 + 175400573 AAAAGAGGTACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30518637 12 + 173848474 AAAAGAGGTACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     225518 12 +   2037526 AAAAGAGGTACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74898538 12 + 122973662 AAAAGAGGTATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30772371 12 + 172585720 AAAAGGGGTACG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30067508 12 - 170955103 AAAAGGGGTACG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     316818 12 +   1495729 AAAAGGGGTACG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     414699 12 -    863181 AAAAGGGGTACG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29566792 12 -  71996105 AAAAGGGGTACG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     252046 12 -    735854 AAAAGGGGTACG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     204873 12 -   1829203 AAAAGGGGTACG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30377320 12 + 171630274 AAAAGGGTTATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           200691 12 +    515838 TAAAGGGTCATG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     832791 12 -   1771730 AAAAGGGTTATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     318592 12 -    383796 AAAAGGGTTATG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               297677 12 + 123392446 AAAAGGGGTATT
i micMur3.chr6             I 91 C 0
s otoGar3.GL873550           248694 12 +  18854210 GAAAGGGGTATT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58039144  8 -  94987271 ----AATTTATG
i mm10.chr17               C 0 I 4
e proCoq1.NW_012149775v1     101594 106 -   1411461 I
e canFam3.chr35            26292501  0 +  26524999 C

a score=659285.000000
s hg38.chr6_GL000254v2_alt  1414685 52 +   4827813 AAGCTTCCCAGA---GGGCCACAGGGCCCAGACCA-GAGTCAAGCCTCTTG-------------TTTT-----A
s panTro5.chr6             30287952 52 + 175400573 AAGCTTCCCAGA---GGGCCACAGGGCCCAGACCA-GAGTCAAGCCTCTTG-------------TTTT-----A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30518649 52 + 173848474 AAGCTTCCCAGA---GGGCCACAGGGCCCAGACCA-GAGTCAAGCCTCTTG-------------TTTT-----A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     225530 52 +   2037526 AAGCTTCCCAGA---GGGCCACAGGGCCCAGACCA-GAGTCAAGCCTCTTG-------------TTTT-----A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74898550 52 + 122973662 AAGCTTCCCAGA---GGGCCACAGGGCCCAGACCA-GAGTCAAGCCTCTTG-------------TTTT-----A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30772383 47 + 172585720 AAGCTTCCCAGA---GGGCCACAGGGCCCAGACCA-GAGTCAAGCCTC------------------TT-----A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30067520 47 - 170955103 AAGCTTCCCAGA---GGGCCACAGGGCCCAGACCA-GAGTCAAGCCTC------------------TT-----A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     316830 47 +   1495729 AAGCTTCCCAGA---GGGCCACAGGGCCCAGACCA-GAGTCAAGCCTC------------------TT-----A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     414711 52 -    863181 AAGCTTCCCAGA---GGGCCACAAGGCCCAGACCA-GAGTCAAGCCTCTTG-------------TTTT-----A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29566804 52 -  71996105 AAGCTTCCCAGA---GGGCCACAGGGCCCAGACCA-GAGTCAAGCCTCTTG-------------TTTT-----A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     252058 52 -    735854 AAGCTTCCCAGA---GGGCCACAGGGCGCAGACCA-GAGTCAAGCCTCTTG-------------TTTT-----A
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     204885 52 -   1829203 AAGCTTCCCAGA---GGGTCACAGGGCCCAGACCA-GAGTCAAGCCTCTTG-------------TTTT-----A
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30377332 52 + 171630274 AAGCTTCCTAGA---GGGTCCCAGGGCCCAGACCA-GGGTCAAGCCTCTTG-------------TTTT-----A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           200703 52 +    515838 AAGCTTCCTAGA---GGGTCACAGGGCCCAGACCA-GGGTCAAGCCTCTTG-------------CTTT-----A
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     832803 52 -   1771730 AAGCTTCCTAGA---GGGTCACAGGGCCCAGACCA-GGGTCAAGCCTCTTG-------------TTTT-----A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     318604 52 -    383796 AAGCTTCCTAGA---GGGTCACAGGGCCCAGACCA-GGGTCAAGCCTCTTG-------------TTTT-----A
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               297689 57 + 123392446 AAGCTTCCTAGA---GGGCCATAGGGCCCAGGCCA-GAGTCAAGTCTCTTG-------------TTTCTCTTGA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     101700 52 -   1411461 AAGCTTCCTATA---GGGCCATAGGGCCCAGGCTA-GAGTCAAGCCACTTG-------------TTTT-----A
i proCoq1.NW_012149775v1   I 106 C 0
s otoGar3.GL873550           248706 52 +  18854210 AGTTTTCCTAGA---GGGCCATAAAAAACAGGTCA-GAATCAAGCCTCTTG-------------TTTT-----A
i otoGar3.GL873550         C 0 I 293
s mm10.chr17               58039156 67 -  94987271 AGGCTTC--AGGTTTGAGCTGCGCGGCTTAGGTTATGAGTTAAATGTCTTAGGAAGACTTTTTTTTTT-----C
i mm10.chr17               I 4 I 3
s canFam3.chr35            26292501 26 +  26524999 -----TCCTAGA---GGA-CACAAG--CCAGGCCA-GA------------------------------------
i canFam3.chr35            C 0 C 0

a score=70224.000000
s hg38.chr6_GL000254v2_alt  1414737 4 +   4827813 GGAG
s panTro5.chr6             30288004 4 + 175400573 GGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30518701 4 + 173848474 GGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     225582 4 +   2037526 GGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74898602 4 + 122973662 GGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30772430 4 + 172585720 GGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30067567 4 - 170955103 GGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     316877 4 +   1495729 GGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     414763 4 -    863181 GGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29566856 4 -  71996105 GGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     252110 4 -    735854 GGAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     204937 4 -   1829203 GGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30377384 4 + 171630274 GGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           200755 4 +    515838 GGAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     832855 4 -   1771730 GGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     318656 4 -    383796 GGAG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               297746 4 + 123392446 GGAG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     101752 4 -   1411461 GGAG
i proCoq1.NW_012149775v1   C 0 I 33
s otoGar3.GL873550           249051 4 +  18854210 GGAG
i otoGar3.GL873550         I 293 C 0
s mm10.chr17               58039226 4 -  94987271 TGAG
i mm10.chr17               I 3 C 0
e canFam3.chr35            26292527 0 +  26524999 C

a score=87794.000000
s hg38.chr6_GL000254v2_alt  1414741 7 +   4827813 AAACCTC
s panTro5.chr6             30288008 7 + 175400573 AAACCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30518705 7 + 173848474 AAACCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     225586 7 +   2037526 AAACCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74898606 7 + 122973662 AAACCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30772434 7 + 172585720 GAACCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30067571 7 - 170955103 GAACCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     316881 7 +   1495729 GAACCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     414767 7 -    863181 GAACCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29566860 7 -  71996105 GAACCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     252114 7 -    735854 GAACCTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     204941 7 -   1829203 GAACCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30377388 7 + 171630274 AACCCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           200759 7 +    515838 AAACCTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     832859 7 -   1771730 AAACCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     318660 7 -    383796 AAACATC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               297750 7 + 123392446 AAACTTC
i micMur3.chr6             C 0 I 2
s otoGar3.GL873550           249055 7 +  18854210 AAACCTC
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               58039230 7 -  94987271 AATCCTC
i mm10.chr17               C 0 I 2
e proCoq1.NW_012149775v1     101756 33 -   1411461 I
e canFam3.chr35            26292527 0 +  26524999 C

a score=1205135.000000
s hg38.chr6_GL000254v2_alt  1414748 84 +   4827813 AGTGGACA-GGCAGGGTAGCCCAGTCCTTAGATCTGTGGGGAAGGCCCTGAGCCCTTC--TGGAGCTAGGAGTGGCAAGAGTGGGAG
s panTro5.chr6             30288015 84 + 175400573 AGTGGACA-GACAGGGTAGCCCAGTCCTTAGATCTGTGGGGAAGTCCCTGAGCCCTTC--TGGAGCTAGGAGAGGCAAGAGTGGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30518712 84 + 173848474 AGTGGACA-GGCAGGGTAGCCCAGTCCTTAGATCTGTGGGGAAGGCCCTGAGCCCTTC--TGGAGCTAGGAGAGGCAAGAGTGGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     225593 84 +   2037526 AGTGGACA-GGCAGGGTAGCCCAGTCCTTAGATCTGTGGGGAAGGCCCTGAGCCCTTC--TGGAGCTAGGAGAGGCAAGAGTGGGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74898613 84 + 122973662 AGTGGACA-GGCAGGGTAGCCCAGTCCTTAGATCTGTGAGGAAGGCCCTGAGCCCTTC--TGGAGCTAGGAGAGGCAAGAGTGGGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30772441 86 + 172585720 AGTGGACA-GGCAGGGTAGCCCAGTCCTTAGATCTGTGGGGAAGGCCCTGAGCCCTTCTTTGGAGCTAGGAGAGGCAAGAGTGGGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30067578 86 - 170955103 AGTGGACA-GGCAGGGTAGCCCAGTCCTTAGATCTGTGGGGAAGGCCCTGAGCCCTTCTTTGGAGCTAGGAGAGGCAAGAGTGGGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     316888 86 +   1495729 AGTGGACA-GGCAGGGTAGCCCAGTCCTTAGATCTGTGGGGAAGGCCCTGAGCCCTTCTTTGGAGCTAGGAGAGGCAAGAGTGGGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     414774 86 -    863181 AGTGGACA-GGCAGGGTAGCCCAGTCCTTAGATCTGTGGGGAAGGCCCTGAGCCCTTCTTTGGAGCTAGGAGAGGCAAGAGTGGGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29566867 86 -  71996105 AGTGGACA-GGCAGGGTAGCCCAGTCCTTAGACCTGTGGGGAAGGCCCTGAGCCCTTCTTTGGAGCTAGGAGAGGCAAGAGTGGGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     252121 86 -    735854 ACTGGACA-GGCAGGGTAGCCCAGTCCTTAGATCTGTGGGGAAGGCTCTGAGCCCTTCTTTGGAGCTAGGAGAGGCAAGAGTGGGAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     204948 86 -   1829203 AGTGGACA-GACAGGTTAGCCCAGTCCTTAGATCTGTGGGGAAGACCCTGAGCCCTTCTTTGGAGCTAGGAGAGGCAAGAGTGGGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30377395 84 + 171630274 AGTGGACA-GGCAGGGTAGCCCAGTCCTTAGATCTGTGGGGAAGGCCCTGAGCCCTTCTTTGGAGCT--GAGAGGCAAGAGTGGGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           200766 86 +    515838 AGTGGACG-GGCAGGGTAGCCCAGTCCTTAGATCTGTGGGGAAGGCCCTGAACCCTTCTTTGGAGCTAAGAGAGGCAAGAGTGGGAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     832866 86 -   1771730 AGTGGACA-GGCAGGGTAGCCCTGTCCTTAGATCTGTGGGGAAAGTCCTGAGCCCTTCTTTGGAGCTAAGAGAGGCAAGAGTGGGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     318667 86 -    383796 AGTGGACA-GGCAGGGTAGCCCAGTCCTTAGATCTGTGGGGAAGGCCCTGAGCCCTTCTTTGGAGCTAAGAGAGGCAAGAGTGGGAG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               297759 86 + 123392446 AGTGGACA-GACAGGGAAGCCCAAGTCTTAGAGCCATGGAGAAGGCCCTGAGCCCTCCTTTGGAGCTAGTACGGGCAAGAGTGGGAG
i micMur3.chr6             I 2 I 402
s proCoq1.NW_012149775v1     101789 87 -   1411461 AGTGGACAGGACAGGGAAGCCCAAGCCTTAGAACCATGGAGAAGGCCCTGAGTCCTTCTTTGGAGCTAGTACGGGCAAGAGTGGGAG
i proCoq1.NW_012149775v1   I 33 C 0
s otoGar3.GL873550           249064 86 +  18854210 AGTGGTTAGGGCAGGGAAGCCCAAGCTTTAGGACAGTGGAGAAGGCCCTGAGCCCTTC-TTGGAGCTAGCACAGGCAAGAGTGGGAC
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               58039239 68 -  94987271 AGTGGACATGAGCAGGAAGCTGCAGACTTCCTGCTGTGCATCATGCCCTGAGCCTTTT-------------------GGGATTGGAG
i mm10.chr17               I 2 C 0
s canFam3.chr35            26292527 62 +  26524999 -----------------AGCCGGAGCCCTATAGCTGTGGAGGAGGACCAG-GCCCATC--TGGAG----AGGAGGCAAG-GTGGGGG
i canFam3.chr35            C 0 C 0

a score=1076259.000000
s hg38.chr6_GL000254v2_alt  1414832 94 +   4827813 TCAAGTATTTGACCAGCAGAGCCTCTATGTAGGAATCATGGTCACTTTACCAATACTGATGG---GG-----AGGGCCTGTTCCCCATTGCAGGCCTAGAAT
s panTro5.chr6             30288099 94 + 175400573 TCAAGTATTTGACCAGCAGAGCCTCTATGTAGGAAACATGGTCACTTTACCAATACTGATGG---GG-----AGGGCCTGTTCCCCATTGCAGGCCTAGAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30518796 94 + 173848474 TCAAGTATTTGACCAGCAGAGCCTCTATGTAGGAAACATGGTCACTTTACCAATACTGATGG---GG-----AGGGCCTGTTCCCCATTGCAGGCCTAGAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     225677 94 +   2037526 TCAAGTATTTGACCAGCAGAGCCTCTATGTAGGAAACATGGTCACTTTACCAATACTGATGG---GG-----AGGGCCTGTTCCCCATTGCAGGCCTAGAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74898697 94 + 122973662 TCAAGTATTTGACCAGCAGAGCCTCTATGTAGGAAACATGGTCACTTTACCAGTACTGATGG---GG-----AGGGCCTGTTCCCCATTGCAGGCCTAGAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30772527 94 + 172585720 TCAAGTATTTGACCAGCAGAGCCTCTGTGTAGGAAACATGGTCACTTTACCATTACTGATGG---GG-----AGGGCTTGTTCCCCATTGCAGGCCTAGAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30067664 94 - 170955103 TCAAGTATTTGACCAGCAGAGCCTCTGTGTAGGAAACATGGTCACTTTACCATTACTGATGG---GG-----AGGGCTTGTTCCCCATTGCAGGCCTAGAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     316974 94 +   1495729 TCAAGTATTTGACCAGCAGAGCCTCTGTGTAGGAAACATGGTCACTTTACCATTACTGATGG---GG-----AGGGCTTGTTCCCCATTGCAGGCCTAGAGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     414860 94 -    863181 TCAAGTATTTGACCAGCAGAGCCTCTGTGTAGGAAACATGGTCACTTTACCATTACTGATGG---GG-----AGGGCTTGTTCCCCATTGCAGGCCTAGAGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29566953 94 -  71996105 TCAAGTATTTGACCAGCAGAGCCTCTGTGTAGGAAACATGGTCACTTTACCATTACTGATGG---GG-----AGGGCTTGTTCCCCATTGCAGGCCTAGAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     252207 94 -    735854 TCAAGTATTTGACCAGCAGAGCCTCTATGTAGGAAACATGGTCACTTTACCATTACTGATGG---GG-----AGGGCTTGTTCCCCATTGCAGGCCTAGAGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     205034 94 -   1829203 TCAAGTATTTGACCAGCAGAGCCTCTGTGTAGGAAACATGGTCACTTTACCAATACTGATGG---GG-----AGGGCCTGTTCCCCATTGCAGGCCTAGAGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30377479 97 + 171630274 TTAAGTATTTGACTAGCAGAGCCACTGTGTAGGAAACGCAGTCACTTTACCAGTACTGCTGGGGAGG-----AGGAACTGTTCCCCACTGCAGGCCTAGAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           200852 94 +    515838 TTAAGTATTCGACTAGCAGAGCCTCTGTGTAGGAAACGCAGTCACTTTACCGGTACTGCTGG---GG-----AGGGCCTGTTCCCCACTGCCGGCCTAGAAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     832952 94 -   1771730 TTAAGTATTTGACTAGCAGAGCCTCTGTGTAGGAAACCCCGTCACTTTGCCAGTACTGCTGC---GG-----AGGGCCTGTTCCCCACTGCAGGCCTGGAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     318753 94 -    383796 CTAAGTATTTGACTAGCAGAGCCTCTGTGTAGGAAACGCAGTCACTTTACCAATACTGCTGG---GG-----AGGGCCTTTTCCCCACTGCAGGCCTAGAAT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     101876 93 -   1411461 GTAAATATTTGACTAGCAGGGCCTCTGTGTAGTAAACGTG--CAGTTTACCAGTACTGGTAG---GG----CAGGGCCTGTTCCCCAGTTCAGGCCTGGAAT
i proCoq1.NW_012149775v1   C 0 I 307
s otoGar3.GL873550           249150 89 +  18854210 AGAAATATTTGACTAGCAGGGCCTCTGTGTAGTGAA------CACTTTACCAGTACTAGTGG---GG----TACAGCCTTTTCCCCAATTCAGGCCTGGAAT
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58039307 68 -  94987271 -------------------------------GTAAATTAGGACTGTTTCCCAACACTGGTGG---TACAAACAGAGCCTCTTTCTCTAGCCTGGCCTAGAAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26292589 36 +  26524999 ----------------CCGGG---------AGTAAA-------------------CTGCTGC---GG-----G--------TACCCAT--CCTGTCTA----
i canFam3.chr35            C 0 C 0
e micMur3.chr6               297845 402 + 123392446 I

a score=705311.000000
s hg38.chr6_GL000254v2_alt  1414926 78 +   4827813 GGTTTGAATGG-GAGAAGTC--------AGGAAGTACTGTAGTAGCTGTAGGGGAGAGAAGATTCTG--AGAGCCAGAAGG--CAGGAATG
s panTro5.chr6             30288193 78 + 175400573 GGTTTGAATGG-GAGAAGTC--------AGGAAGTACTGTAGTAGCTGTAGGGGAGAGAAGATTCTG--AGAGCCAGAAGG--CAGGAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30518890 78 + 173848474 GGTTTGAATGG-GAGAAGTC--------AGGAAGTACTGTAGTAGCTGTAGGGGAGAGAAGATTCTG--AGAGCCAGAAGG--CAGGAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     225771 78 +   2037526 GGTTTGAATGG-GAGAAGTC--------AGGAAGCACTGTAGAAGCTGTAGGGGAGAGAAGATTCTG--AGAGCCAGAAGG--CAGGAATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74898791 82 + 122973662 GGTTTGAATGG-GAGAAGTCAGTT----AGGAAGTACTGTAGTAGCTGTAGGGGAGAGAAGATTCTG--AGAGCCAGAAGG--CAGGAATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30772621 78 + 172585720 GGTTTGAATGG-GAGAAGTC--------AGGAAGTACTGTAGCAGCTGTAGGGAAGAGAAGATTCTG--AGAGCCAGAAAG--CAGGAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30067758 78 - 170955103 GGTTTGAATGG-GAGAAGTC--------AGGAAGTACTGTAGCAGCTGTAGGGAAGAGAAGATTCTG--AGAGCCAGAAAG--CAGGAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     317068 78 +   1495729 GGTTTGAATGG-GAGAAGTC--------AGGAAGTACTGTAGCAGCTGTAGGGAAGAGAAGATTCTG--AGAGCCAGAAAG--CAGGAATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     414954 78 -    863181 GGTTTGAATGG-GAGAAGTC--------AGGAAGTACTGTAGCAGCTGTAGGGAAGAGAAGATTCTG--AGAGCCAGAAAG--CAGGAATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29567047 78 -  71996105 GGTTTGAATGG-GAGAAGTC--------AGGAAGTACTGTAGCAGCTGTAGGGAAGAGAAGATTCTG--AGAGCCAGAAAG--CAGGAATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     252301 78 -    735854 GGTTTGAATGG-GAGAAGTC--------AGGAAGTACTGTAGCAGCTGTAGGGAAGAGAAGATTCTG--AGAGCCAGAAAG--CAGGAATG
i manLeu1.NW_012107142v1   C 0 M 1845
s colAng1.NW_012115577v1     205128 78 -   1829203 GGTTTGAATGG-GAGAAGTC--------AGGAAGTACTGTAGCAGCTGTAGGGAAGAGAAGATTCTG--AGAGCCAGAAAG--CAGGAATG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30377576 87 + 171630274 AGTATAGAAGGGGGGAAGTCAGTTAGGAAGTAAGTACTGTAGTAGCTGTAGGGGAGAGAAGATCCTT--AGAGCCAGGGAG--CCCGAATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           200946 79 +    515838 AGTATAGAAGGAGGGAAGTC--------AGGAAATACTGTAGTAGCTGTAGGGGAGAGAAGATCCTC--AGAGCCAGGGAG--CAGGAATG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     833046 82 -   1771730 AGTATAGCAGG-GGGAAGTCAGTC----AGGAAGTACTGTAGTAGCTGTCGGGGAGAGAAGATCCTG--AGAGCCAGGGAG--CAGGAATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     318847 83 -    383796 AGTATAGAAGGGGGGAAGTCAGTC----AGGAAGTAATGTAGTAGCTGTCGGGGAGAGAAGATCCTG--AGAGCCAGGGAG--CAAGAATG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           249240 84 +  18854210 GAATAGAAGGG-AAGAAATTAGGT----GGGAAGTACTGGGGTAACAGTGGGGGAGAAAAGATTTTGGTATGGGAGGGAGG--AAGGAATG
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58039375 54 -  94987271 GGTACGGAAAG--AGGACTC--------A-------------------------AGAAAAAGGTCTT--AGGTCATGGAGACTCGGGACTA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26292625 18 +  26524999 ---------------------------------------------------------------CCTG--GTGGCCAG--GG--CTGG----
i canFam3.chr35            C 0 C 0
e micMur3.chr6               297845 402 + 123392446 I
e proCoq1.NW_012149775v1     101969 307 -   1411461 I

a score=1485192.000000
s hg38.chr6_GL000254v2_alt  1415004 195 +   4827813 GATTTGGTTTTGAGCAGGGACGTGGAAACGTGGAGACCAGGTGAGGTCTCATTATTTT------GGGGCGA--------------------AAATGTGGGTTGC-----------TATTAATACTCCTG---CAATGGGCG-TGTGAATGTGTTCCCAGAAATGAGTGGGGAATTCCAC-CCCCAAA---AAGCAGCTGCAGGGCCAGTGG-----CCGGGCCAAACTTCTA------GTTGGAGACGAGA-
s panTro5.chr6             30288271 195 + 175400573 GATTTGGTTTTGAGCAGGGATGTGGAAACGTGGAGACCAGGTGAGGTCTCATTATTTT------GGGGGGA--------------------AAATGTGGGTTGC-----------TATTAATACTCCTG---CAATGGGCA-TGTGAATGTGTTCCCAGAAATGAGTGGGGAATTCCAC-GCCCAAA---AAGCAGCTGCAGGGCCAGTGG-----CCGGGCCAAACTTCTA------GTTGGAGACGAGA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30518968 195 + 173848474 GATTTGGTTTTGAGCAGGGATGTGGAAACGTGGAGACCAGGTGAGGTCTCATTATTTT------GGGGGGA--------------------AAATGTGGGTTGC-----------TATTAATACTCCTG---CAATGGGCG-TGTGAATGTGTTCCCAGAAATGAGTGGGGAATTCCAC-GCCCAAA---AAGCAGCTGCAGGGCCAGTGG-----CCGGGCCAAACTTCTA------GTTGGAGACGAGA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     225849 195 +   2037526 GATTTGGTTTTGAGCAGGGATGTGGAAACGTGGAGACCAGGTGAGGTCTCATTATTTT------GGGGGGA--------------------AAATGTGGGTTGC-----------TATTAATACTCCTG---CAATGGGCG-TGTGAATGTGTTCCCAGAAATGAGTGGGGAATTCCAC-GCCCAAA---AAGCAGCTGCAGGGCCAGTGG-----CCGGGCCAAACTTCTA------GTTGGAGATGAGA-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74898873 195 + 122973662 GATTTGGTTTTGAGCAGGGATGTGGAAACGTGGAGACCAGGTGAGGTCTCATTATTTT------GGGGGGA--------------------AAATGTGGGTTGG-----------TATTAATACTCCTG---CAATGGGCC-TGTGAATGTGTTCCCAGAAATGAGTGGGGAATTTCAC-GCCCAAA---AAGCAGCTGCAGGGCCAGTGG-----CCGGGCCAAACTTCTA------GTTGGAGACGAGA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30772699 188 + 172585720 AGTTTGATTTTGAGCAGGGACGCGGAAACGTGGAGACCAGGTGAGATCTCATTTTTT--------GGGGGG--------------------AAATGTGGGTTGG-----------GATTAATACTCCTG---CAATGGGTG-TGTGAATGTGTTAGCAGAAATGAGTGGGGAATTCCAC-GCCAAAA-AGAAGCAGCTGCAGGGCCAGTGG-----CCGGGCCAAACTTCTA------GTTG-------GA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30067836 188 - 170955103 AGTTTGATTTTGAGCAGGGACGCGGAAACGTGGAGACCAGGTGAGATCTCATTTTTT--------GGGGGG--------------------AAATGTGGGTTGG-----------GATTAATACTCCTG---CAATGGGTG-TGTGAATGTGTTCGCAGAAATGAGTGGGGAATTCCAC-GCCAAAA-AGAAGCAGCTGCAGGGCCAGTGG-----CCGGGCCAAACTTCTA------GTTG-------GA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     317146 188 +   1495729 AGTTTGATTTTGAGCAGGGACGCGGAAACGTGGAGACCAGGTGAGATCTCATTTTTT--------GGGGGG--------------------AAATGTGGGTTGG-----------GATTAATACTCCTG---CAATGGGTG-TGTGAATGTGTTCGCAGAAATGAGTGGGGAATTCCAC-GCCAAAA-AGAAGCAGCTGCAGGGCCAGTGG-----CCGGGCCAAACTTCTA------GTTG-------GA-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     415032 189 -    863181 AGTTTGATTTTGAGCAGGGACGCGGAAACGTGGAGACCAGGTGAGATCTCATTTTTT-------GGGGGGG--------------------AAATGTGGGTTGG-----------GATTAATACTCCTG---CAATGGGTG-TGTGAATGTGTTCGCAGAAATGAGTGGGGAATTCCAC-GCCAAAA-AGAAGCAGCTGCAGGGCCAGTGG-----CCGGGCCAAACTTCTA------GTTG-------GA-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29567125 189 -  71996105 GATTTGATTTTGAGCAGGGACGTGGAAACGTGGAGAGCAGGTGAGATCTCATTTTTG-------GGGGGGG--------------------AAATGTGGGTTGG-----------GATTAATACTCCTG---CAATGGTCG-TGTGAATGTGTTCGCAGAAATGAGTGGGGAATTCCAC-GCCAAAA-AGAAGCAGCTGCAGGGCCAGTGG-----CCGGGCCAAACTTCTA------GCTG-------GA-
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     205206 189 -   1829203 GATTTGATTTTGAGCGGGGACGTGGAAACGTGGAGACCAGGTGAGATCTCATTTTTG--------GGGGGG--------------------AAATGTGGGTTGG-----------TATTAATACTCCTG---CAATGGGCG-TGTGAATGTGTTCGCAGAAATGAGTGGGGAATTGCACGGCCAAAA-AGAAGCAGCTGCAGGGCCAGTGG-----CCGGGCCAGACTTCTA------GTTG-------GG-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30377663 196 + 171630274 GATTTGGTTTTGAGCAGGGATGTGAAAACTTGGAGGCCAGCT---GTCTTATTATTTT-----AGGGGAAA--------------------AAATGTGGGTTGG-----------TATTAATACTCCTA---CAATGGGCG-TGTGAATGAGCTCCCTGAAATTAGAAGGGAATTCCAC-GCCCAAAAAGAAGCAGCTGCAGGGCCAGTGG-----CCGGGCCAGACTTCTA------GCTGGAGACGAGA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           201025 199 +    515838 GATTTGGTTTTGAGCAGGGATGTGAAAACTTGGAGGCCAGCTGAGGTCTTATCATTTT-----GGGGAAAA--------------------AAATGTGGGTTGG-----------TATTAATACTCCTA---CAATGGGCG-TATGAATGAGCTCCCTGAAATGAGAAGGGAATTCCAC-GCCCAAAAAGAAGCAGCCGCAGGGCCAGTGG-----CCGGGCCAGACTTCTA------GCTGGAGACAAGA-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     833128 199 -   1771730 GATTTGGTTTTGAGCAGGGATGTGAAAACCTGGAGGCCAGCTAAGGTCTTATTATTTT-----GGGAGAAA--------------------AAATGTGGGTTGG-----------TATTAATACTCCTA---CAATGGGCG-TGTGAATGAGCTCCCTGAAATGAGAAGGGAATTCTAC-GCCCAAAAACAAGCAGCCACAGGGCCAGTGG-----CCGGGCCAGACTTCTA------GCTGGAGACGAGA-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     318930 199 -    383796 GATTTGGTTTTAAGCAGGGATGTGAAAACTTGGAGGCCAGCTGAGGTCTTATTATTTT-----GGGGGAAA--------------------AAATGTGGGTTGG-----------TATTAATACTCCTA---CAATAGGCA-TGTGAATGAACTCCCTGAAATGAGAAGGGAATTCCAT-GCCCAAAAAGAAGCAGCTGCATGGCCAGTGG-----CCGGGCCAGACTTCTA------GCTGGAGACGAGA-
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           249324 216 +  18854210 GGTTTGGCTTTGGGCATGGATGTGGAAACCTGGA-CCTAGTAGAGGTCTTACTAATGTGTGTGGGGGGGGAGGGAATAAGACGGAGAAGAGAGATGTGGTTTGGTGTGAGGTGCTTATCAATACTACCA---CAGTGAGTT-TGCAGGCACGATTCCTGCAATGACT------TCCTGC-GCCTAAG------------------AGGTGC-----CCAGGCCAAACTAGGATGGGGGGTTAGGAGCGAAA-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58039429 203 -  94987271 GACTGGCTTAAAGGCACGAATGTACAA--------GCCAGTTGAGGTTTTGATTT------------GGGA--------------------GAATGTGAGTGGACAAAGGGTGCTTATTAATACTCCTGTTCCGATAGGTGTTACAGACAAGGTCACTGAAACAGGTGGGGATTTGTGC-AAGGGAC-AGAAGTAGCCTCGAGGCCATCTGGACTACTGCGGTAGGGTAGGA------GCTAGAGACCTGA-
i mm10.chr17               C 0 I 2
s canFam3.chr35            26292643 136 +  26524999 -----GGTGCTGGGTAGGGAT----------------CAGGT----------------------GGGAAGG--------------------A----------GG----------------------------GAGGGGACA-GGTGGATGTGCTCCCGGGAG-GAAGGGGGGCTCCCTG-GCGCAGGAGGAAGCCTCC-Cggtggtggtgg-----tggtggtggtggtggt------ggtggtggtgTGGA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               297845 402 + 123392446 I
e proCoq1.NW_012149775v1     101969 307 -   1411461 I
e manLeu1.NW_012107142v1     252379 1845 -    735854 M

a score=1344186.000000
s hg38.chr6_GL000254v2_alt  1415199 88 +   4827813 CTCAGCTTTCCGCTGGTACAATGCGGAGCGGAGCACGAGGGTCGCAGGTGCAGAACAGCGGGAAGATGCGCTCCCCCAGGGGGCCAGG
s panTro5.chr6             30288466 88 + 175400573 CTCAGCTTTCCGCTGGTACAATGCGGAGCGGAGCACGAGGGTCGCAGGTGCAGAACAGCGGGAAGATGCGCTCCCCCAGGGGGCCAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30519163 88 + 173848474 CTCAGCTTTCCGCTGGTACAATGCGGAGCGGAGCACGAGGGTCGCAGGTGCAGAACAGCGGGAAGATGCGCTCCCCCAGGGGGCCAGG
i panPan2.chr6             C 0 I 20
s gorGor5.CYUI01015528v1     226044 87 +   2037526 CTCAGCTTTCC-CTGGTACAATGCGGAGCGGAGCACGAGGGTCGCAGGTGCAGAACAGCGGGAAGATGCGCTCCCCCAGGGGGCCAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74899068 88 + 122973662 CTCAGCTTTTCGCTGGTACAATGCGGAGCGGAGCACGAGGGTCGCAGGTGCAGAACAGCGGGAAGATGCGCTCCCCCAGGGGACCGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30772887 88 + 172585720 CTCAGCTTTCCGCTGGTACAATGCGGAGCGGAGCACGAGGGTCGCAGGTGCAGAACAGCGGGAAGATGCGCTCCCCCAGGGGGGCGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30068024 88 - 170955103 CTCAGCTTTCCGCTGGTACAATGCGGAGCGGAGCACGAGGGTCGCAGGTGCAGAACAGCGGGAAGATGCGCTCCCCCAGGGGGGCGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     317334 88 +   1495729 CTCAGCTTTCCGCTGGTACAATGCGGAGCGGAGCACGAGGGTCGCAGGTGCAGAACAGCGGGAAGATGCGCTCCCCCAGGGGGGCGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     415221 88 -    863181 CTCAGCTTTCCGCTGGTACAATGCGGAGCGGAGCACGAGGGTCGCAGGTGCAGAACAGCGGGAAGATGCGCTCCCCCAGGGGGGCGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29567314 88 -  71996105 CTCAGCTTTCCGCTGGTACAATGCGGAGCGGAGCACGAGGGTCGCAGGTGCAGAACAGCGGGAAGATGCGCTCCCCCAGGGGGGCGGA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     205395 88 -   1829203 CTCAGCTTTCCGCTGGTACAATGCGGAGCGGAGCACGAGGGTCGCAGGTGCAGAACAGCGGGAAGATGCGCTCCCCCAGGGGGCCGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30377859 88 + 171630274 CTCAGCTTTCCGCTGGTACAATGCGGAGTGGGGCACGAGGGTCACGGGTGCAGAACAGCGGGAAGATGCGCTCCCCCAAGGGACCGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           201224 88 +    515838 CTCAGCTTTCCGCTGGTACAATGCGGAGTGGGGCACGAGGGTCACGGGTGCAGAACAGCGGGAAGATGCGCTCCCCCAGGGGACCGGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     833327 88 -   1771730 CTCAGCTTTCCGCTGGTACAATGCGGAGTAGGGCACGAGGGTCACGGGTGCAGAACAGCGGGAAGATGCGCTCTCCCAGGGGACCGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     319129 88 -    383796 CTCAGCTTTCCGCTGGTACAATGCGGAGTGGGGCACGAGGGTCACGGGTGCAGAACAGCGGGAAGATGCGCTCCCCCAAGGGACCGGG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               298247 88 + 123392446 CTCAGCCTTCCGCTGACACAATGCGTAGCGGGGCGCGGGGGTCCCGGGTGCAGAACAGCGGGAAGACACGCTCCCCCAGGGGGCCGGG
i micMur3.chr6             I 402 C 0
s proCoq1.NW_012149775v1     102276 88 -   1411461 CTCAGCCTTCCGCTGGCACAATGCGCAGCGGGGCGCGGGGGTCCCGGGTGCAGAACAGCGGGAAGATGCGCTCACCCAGGGGCCCGGG
i proCoq1.NW_012149775v1   I 307 C 0
s otoGar3.GL873550           249540 88 +  18854210 CTCAGCCTTCGGCTGGCACAATGCGCAGCGGGGCACGGGGATCACGGGTGCAGAACAGAGGGAATATGCGCTCCCCCAGGGGACCGGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58039634 88 -  94987271 CTCAGGCTTCTCCAGGCAAGATACGCAGCGGGGTACGCGGGTCACAAGTGCAGAGCAGGGGGAAGACACGCTCCCCGAGCGGGCCCGG
i mm10.chr17               I 2 C 0
s canFam3.chr35            26292779 88 +  26524999 CTCAGCCTTCGGCTGGCACAATGCGGAGTGTGGCGTGGGCGTGGCGGGTGCAGAGCAGCGGGAAAACGCGCTCCCCCAGGGGGCCCGG
i canFam3.chr35            C 0 C 0
e manLeu1.NW_012107142v1     252379 1845 -    735854 M

a score=3818722.000000
s hg38.chr6_GL000254v2_alt  1415287 266 +   4827813 CGCCTGGAAGGCGTAAAGCAGGTCGAGTGAGCGGCCGTCGTAGAAGGCCACGCGGCCCCGCTCCCAGTCCAGGTCCACGCGAATGCGCCGCGGCGGGGGCTCAACACCGCCCAGCAGGGTGGGTTCGGGTGCCGTGAGGGCCCACAGGCGGCCGCCGCGGCCCTCCACGGCCCACACGGCCCCCGCAGGGCACAGCCTTACGCAGCCCTTGCGTTGCACTGATTCCCCGGCCGCGCCCACTGCATAGTGGCTCTCCTCGTCGTCCG------
s panTro5.chr6             30288554 266 + 175400573 CGCCTGGAAGGCGTAAAGCAGGTCGAGTGAGCGGCCGTCGTAGAAGGCCACGCGGCCCCGCTCCCAGTCCAGGTCCACGCGAATGCGCCGCGGCGGGGGCTCAACACCGCCCAGCAGGGTGGGCTCGGGTGCCGTGAGGGCCCACAGGCGGCCGCCGCGGCCCTCCACGGCCCACACGGCCCCCGCAGGGCACAGCCTTACGCAGCCCTTGCGTTGCACTGATTCCCCGGCCGCGCCCACTGCATAGTGGCTCTCCTCGTCGTCCT------
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     226131 265 +   2037526 CGCCTGGAAGGCGTAAAGCAGGTCGAGTGAGCGGCCGTCGTAGAAGGCCAC-CGGCCCCGCTCCCAGTCCAGGTCCACGCGAATGCGCCGCGGCGGGGGCTCAACACCGCCCAGCAGGGTGGGCTTGGGTGCCGTGAGGGCCCACAGGCGGCCGCCGCGGCCCTCCACGGCCCACACGGCCCCCGCAGGGCACAGCCTTACGCAGCCCTTGCGTTGCACTGATTCCCCGGCCGCGCCCACTGCATAGTGGCTCTCCTCGTCGTCCT------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74899156 266 + 122973662 CGCCTGGAACGCATAAAGCAGGTCCAGTGAGCGGCCGTCGTAGAAGGCCACGCGGCCCCGCTCCCAGTCCAGGTCCACGCGAATGCGCCGTGGCGGGGGCTCAACACCGCCCAGCAGGGTGGGCTCGGGTGCCGTAAGGGCCCACAGACGGCCGCCGCGGCCCTCCACGGCCCACACGGCACCCGCAGGGCACATCCTCACGCAGCCCTTGCGTTGCACTGATTCCCCGGCCGCGCCCACTGCATAGTGGCTCTCCTCGTCGTCCT------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30772975 266 + 172585720 CGCCTGGAAGGCATAAAGCAAGTCCAGTGAGCGGCCGTCGTAGAAGGCTACGCGGCCCCGCTCCCAGTCCAGGTCCACGCGAATACGCCGCGGCGGGGGCTCGACTCCGCCCAGCAGGGTGGGCTCGGGTGCCGTGAGGGCCCACAGGCGGCCGCCGCGGCCCTCCACGGCCCACACGGCCCCCGCAGGGCACAGCCTCACGCAGCCCTTGCGTTGCACGGATTCCCCGGCCGCGCCCACTGCATAGTGGCTCTCCTCGTCGTCCT------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30068112 266 - 170955103 CGCCTGGAAGGCATAAAGCAAGTCCAGTGAGCGGCCGTCGTAGAAGGCTACGCGGCCCCGCTCCCAGTCCAGGTCCACGCGAATACGCCGCGGCGGGGGCTCGACTCCGCCCAGCAGGGTGGGCTCGGGTGCCGTGAGGGCCCACAGGCGGCCGCCGCGGCCCTCCACGGCCCACACGGCCCCCGCAGGGCACAGCCTCACGCAGCCCTTGCGTTGCACGGATTCCCCGGCCGCGCCCACTGCATAGTGGCTCTCCTCGTCGTCCT------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     317422 266 +   1495729 CGCCTGGAAGGCATAAAGCAAGTCCAGTGAGCGGCCGTCGTAGAAGGCTACGCGGCCCCGCTCCCAGTCCAGGTCCACGCGAATACGCCGCGGCGGGGGCTCGACTCCGCCCAGCAGGGTGGGCTCGGGTGCCGTGAGGGCCCACAGGCGGCCGCCGCGGCCCTCCACGGCCCACACGGCCCCCGCAGGGCACAGCCTCACGCAGCCCTTGCGTTGCACGGATTCCCCGGCCGCGCCCACTGCATAGTGGCTCTCCTCGTCGTCCT------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     415309 266 -    863181 CGCCTGGAAGGCATAAAGCAGGTCCAGTGAGCGGCCGTCGTAGAAGGCTACGCGGCCCCGCTCCCAGTCCAGGTCCACGCGAATACGCCGCGGCGGGGGCTCGGCTCCGCCCAGCAGGGTGGGCTCGGGTGCCGTGAGGGCCCACAGGCGGCCGCCGCGGCCCTCCACGGCCCACACGGCCCCCGCAGGGCACAGCCTCACGCAGCCCTTGCGTTGCACGGATTCCCCGGCCGCGCCCACTGCATAGTGGCTCTCCTCGTCGTCCT------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29567402 266 -  71996105 CGCCTGGAAAGCATAAAGCAGGTCCAGTGAGCGGCCGTCGTAGAAGGCCACGCGGCCCCGCTCCCAGTCCAGGTCCACGCGAATACGCCGCGGCGGGGGCTCGACTCCGCCCAGCAGGGTGGGCTCGGGTGCCGTGAGGGCCCACAGGCGGCCGCCGCGGCCCTCCACGGCCCACACAGCCCCCGCAGGGCACAGCCTCACGCAGCCCTTGCGTTGCACGGATTCCCCGGCCGCGCCCACTGCATAGTGGCTCTCCTCGTCGTCCT------
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     205483 266 -   1829203 CGCCTGGAAGGCATAAAGCAGGTCCAGTGAGCGGCCGTCGTAGAAGGCCACGCGGCCCCGCTCCCAGTCCAGGTCCACGCGAATACGCCGCGGCGGGGGCTCGACTCCGCCCAGCAGGGTGGGCTCGGGTGCCGTGAGGGCCCACAGGCGGCCGCCGCGGCCCTCCACGGCCCACACGGCCCCCGCAGGGCACAGCCTCACGCAGCCCTTGCGTTGCACGGATTCCCCGGCCGCACCCACTGCATAGTGGCTCTCCTCGTCGTCCT------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30377947 266 + 171630274 CGCCTGGAAGGCGAAAAGCAAGTCCAGTGAGCGGCCGTCGTAGAAGGCCACACGGCCCCGCTCCCAGTCCAAGTCCACGCGAATgcgccgcggcgggggctcggcgccgcccAGCAGGGTAGGCTCGGGTGCCGTGAGGGCCCACAGGCGGCCACCGCGGCCCTCCACGGCCCACACGGCCCCAGCAGGGCACAGCCTCACGCGGCCCTTGCGTTGCACGGATTCCCCAGCGGCGCCCACAGCATAGTGGCTCTCCCCGTCGTCCT------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           201312 266 +    515838 CGCCTGGAAGGCGAAAAGCAGGTCCAGTGAGCGGCCGTCGTAGAAGGCCACGCGGCCCCGCTCCCAGTCCAAGTCCACGCGAATGCGCCGCGGCGGTGGCTCGGCGCCGCCCAGCAGGGTGGGCTCGGGTGCCGTGAGGGCCCACAGGCGGCCGCCGCGGCCCTCCACGGCCCACACGGCCCCCGCAGGGCACAGCCTCACGCGGCCCTTGCGTTGCACAGATTCCCCGGCGGCACCAACAGCATAGTGGCTCTCCCCGTTGTCCT------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     833415 266 -   1771730 CGCCTGGAAGGCGAAAAGCAGGTCCAGTGAGCGGCCGTCGTAGAAGGCCACACGGCCCCGCTCCCAGTCCAAGTCCACGCGAATGCGCCGTGGCGGGGACTCGGCGCTGCCCAGCGGGGTGGGCTCGGGTGCCGTGAGGGCCCACAGGCGGCCGCCGCGGCCCTCCACTGCCCACACGGCCCCCGAAGGGCACAGCCTCACGCGGCCCTTGCGTTGCACGGATTCCCCGGCGGCGCCCACTGCATAGTGGCTCTCCCCGTCGTCCT------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     319217 266 -    383796 CGCCTGGAAGGCGAAAAGCAGGTCCAGTGAGCGGCCGTCGTAGAAGGCCACGCGGCCCCGCTCCCAGTCCAAGTCCACGCGAATGCGCCGCGGCGGGGGCTCGGCACCGCCCAGCAGGGTGGGCTCGGGTGCCGTGAGGGCCCACAGGCGGCCGCCGCGGCCCTCCACGGCCCACACGGCCCCCGCAGGGCACAGCCTCACGCGGCCCTTGCGTTGCACGGATTCCCCGGCGGCGCCCACAGCATAGTGGCTCTCCCCGTCGTCCT------
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               298335 266 + 123392446 CGCCTGGAAGGCGAAGAGCAGGTCCAGCGAGTGGCCGTCGTAGAAGGCCACGCGGCCCCGCTCCCAGTCCAAGTCCACTCGAATGCGCCGCGGCGGGGGCCCAGCGCCGCCCAGCAGGGTGGGCTCGGGTGCCGTGAGGGCCCAGAGACGGCCGCCGCGGCCCTCCACGGCCCACACGGCTCCGGCGGGGCACAGCCTCACGCGACCCTTGCGCTGCACCGACTCCCCTGCCGCGCCCACGGCATAGCGGCGCTCCCCGTCATCCT------
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     102364 266 -   1411461 CGCCTGGAAGGCGAAGAGCAGGTCCAGCGAGCGGCCGTCGTAGAAGGCCACGCGACCCCGCTCCCAGTCCAAGTCCACGCGAATGCGCCGCGGCGGGGGCCCGGCGCCGCCCAGCAGGGTGGGCTCCGGTGCCGTGAGGGCCCAGAGACGGCCGCCGCGGCCCTCCACGGCCCACACGGCTCCCGCGGGGCACAGCCTCACGCGACCCTTGCGTTGCACCGACTCCCCTGCCGCGCCCACGGCATAGCGGCTCTCCCCGTCGTCCT------
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           249628 266 +  18854210 TGCCTGGAAGGCGAAGAGGAGGTCCAGTGAGCGGCCGTCGTAGAAGGCCACTCGGCCCCGCTCCCAATCCAAGTCCACGCGAATGCGCCGCGGTGGGGGCCTGGCACCGCCCAGCAGGGTGGGCTCGGGTGCGGTGAGGGCCCAGAGACGGCCACCACGGCCCTCCACAGCCCACACGGCCCCCGCAGGGCACAGCTTCACGCGACCTTTGCGTTGCACTGACTCCCCTGCCGCCCCTACAGCATAGCGGCTCTCCCCGTCGTCCT------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58039722 266 -  94987271 CGCCTGGAAGGCGAAGAGCAAGTCCAATGAGCGGCCGTCATAGAAGGCCACACGACCCCGCTCCCAGTCCAAGTCCACGCGAATGCGCTGCGGCGGGGGCCTGGCACCACCTAGCAGGGTGGGCTCTGGAGCCGTGAGCGCCCACAAGCGGCCGCCGCGGCCCTCCACGGCCCATATAGCCTCCGATGGGCACAGCTTGATGAGGCCCTTGCGGGTCACGGACTCCCCGGCAGCGCCCACGGCGTAGCAGCTCTCTCCCGCGTTCT------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26292867 272 +  26524999 CCCCTGGAAGGCGAAGAGTAGGTCTAGGGAGTGGCCGTCATAGAAGGCTACGCGGCCCCGCTCCCAGTCAAGGTCTACGCGGATGCGCCGTGGCACGGGCCCTGCACCACCCAGTGGGGTGGGGTCAGGGGCGGTGAGGGCCCACAGGCGGCCGCCGCGGCCCTCCACAGCCCACACGGCCCCCGCGGGGCACAGCCCCACGCGGCCCTTGCGGCGCACTGACTCCCCGGCCGCGCCCACGGCGTAGCGGCCCTTGGCTTTATCCTCGTCCG
i canFam3.chr35            C 0 C 0
e manLeu1.NW_012107142v1     252379 1845 -    735854 M
e panPan2.chr6             30519251  20 + 173848474 I

a score=4420450.000000
s hg38.chr6_GL000254v2_alt  1415553 301 +   4827813 ---CATCCTCCCCAGAAGAGTCTCTGCAGGAGGCGGCGTCCGCAGTCTCCACCTCCCAGCAGTGGCGGCCGGCCCCGAAGCCCTGCGCACCCAGCACAGCTGGGAGCTGATCGAAGCGCTTGGGGCCGTCAGGGGGCGCGGGCGTCCCTGGTGGGGCCAGTTGTACGCTGCGGCGGTCGGCGGAGATGAGCAGGCGGCGGTGTGCGGTCCCAGGGTCCAGGGTCAGGTCGGCTGGAGACGGGGAGGCAGGGAGAGGACCTCATGAGA-----GAGTTTTCTAA---ATCACAGGCGGGGTAGGGTGGAGAAT
s panTro5.chr6             30288820 301 + 175400573 ---CATCCTCCCCAGAAGAGTCTCTGCAGGAGGCGGCGTCCGCAGTCTCCACCTCCCAGCAGTGGCGGCCGGCCCCGAAGCCCTGCGCACCCAGCACAGCTGGGAGCTGATCGAAGCGCTTGGGGCCGTCAGGGGGCGCGGGCGTCCCTGGTGGGGCCAGTTGTACGCTGCGGCGGTCGGCGGAGATGAGCAGGCGGCGGTGTGCGGTCCCAGGGTCCAGGGTCAGGTCGGCTGGAGACGGGGAGGCAGGGAGAGGACCTCATGAGA-----GAGTTTTCTAA---ATCACAGGCGGGGTAGGGTGGAGAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30519271 301 + 173848474 ---CATCCTCCCCAGAAGAGTCTCTGCAGGAGGCGGCGTCCGCAGTCTCCACCTCCCAGCAGTGGCGGCCGGCCCCGAAGCCCTGCGCACCCAGCACAGCTGGGAGCTGATCGAAGCGCTTGGGGCCGTCAGGGGGCGCGGGCGTCCCTGGTGGGGCCAGTTGTACGCTGCGGCGGTCGGCGGAGATGAGCAGGCGGCGGTGTGCGGTCCCAGGGTCCAGGGTCAGGTCGGCTGGAGACGGGGAGGCAGGGAGAGGACCTCATGAGA-----GAGTTTTCTAA---ATCACAGGCGGGGTAGGGTGGAGAAT
i panPan2.chr6             I 20 C 0
s gorGor5.CYUI01015528v1     226396 300 +   2037526 ---CATCCTCCCCAGAAGAGTCTCTGCAGGAGGCGGCGTCCGCAGTCTCCACCTCCCAGCAGTGGCGGCCGGCCCCGAAGCCCTGCGCACCCAGCACAGCTGGGAGCTGATCGAAGCGCTTGGGGCCGTCAGGGGGCGCGGGCGTCCCTGGTGGGGCCAGTTGTACGCTGCGGCGGTCGGCGGAGATGAGCAGGCGGCGGTGTGCGGTCCCAGGGTCCAGGGTCAGGTCGGCTGGAGACGGGGAGGCAGGGAGAGGACCTCATGAGA-----GAGTTTTCTAA---ATCACAGGCGGGGTAGGGTGGAG-AT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74899422 301 + 122973662 ---CATCCTCCCCAGAAGAGTCTCTGCAGGAGGCGGCTTCCGCAGTCTCCACCTCCCAGCAGTGGCGGCCGGCCCCGAAGCCCTGCGCACCCAGCACAGCTGGGAGCTGATCGAAGCGCTTGGGGCCATCAGGGGGCGCGGGCGTCCCTGGTGGGGCCAGTTGTACGCTGCGGCGGTCGGCGGAGATGAGCAGGCGGCGGTGTGCGGTCCCAGCGTCCAGGGTCAGGTCGGCTGGAGAGGAGGAGGCAGGGAGAGGACCTCATGAGA-----GAGTTTTCTAA---ATCACAGGAAGGGTAGGGTGGAGAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30773241 301 + 172585720 ---CATCCTCCCCAGAAGAGTCTCTGCAGGAGGCAGCGTCCGCAGTCTCCACCTCCCAGCAGTGGCGGCCGGCCCCGAAGCCCTGCGCGCCCAGCACAGCCGGGAGCTGATCGAAGCGCTTGGGGCCGTCAGGGGGCGCGGGCGTCCCTGGTGGGGCCAGTTGAACGCTGCGGCGGTCGGCGGAGATGAGCAGGCGGCGGTGTGCAGTCCCAGGGTCCAGGGTCAGGTCGGCTGGAGAGCGGGAGGCAGGGAGAGGACCTCATGAGA-----GAGTTTTCTAT---ATCACAGGCAGGGTAGGGTGGAGAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30068378 301 - 170955103 ---CATCCTCCCCAGAAGAGTCTCTGCAGGAGGCAGCGTCCGCAGTCTCCACCTCCCAGCAGTGGCGGCCGGCCCCGAAGCCCTGCGCGCCCAGCACAGCCGGGAGCTGATCGAAGCGCTTGGGGCCGTCAGGGGGCGCGGGCGTCCCTGGTGGGGCCAGTTGAACGCTGCGGCGGTCGGCGGAGATGAGCAGGCGGCGGTGTGCGGTCCCAGGGTCCAGGGTCAGGTCGGCTGGAGAGCGGGAGGCAGGGAGAGGACCTCATGAGA-----GAGTTTTCTAT---ATCACAGGCAGGGTAGGGTGGAGAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     317688 301 +   1495729 ---CATCCTCCCCAGAAGAGTCTCTGCAGGAGGCAGCGTCCGCAGTCTCCACCTCCCAGCAGTGGCGGCCGGCCCCGAAGCCCTGCGCGCCCAGCACAGCCGGGAGCTGATCGAAGCGCTTGGGGCCGTCAGGGGGCGCGGGCGTCCCTGGTGGGGCCAGTTGAACGCTGCGGCGGTCGGCGGAGATGAGCAGGCGGCGGTGTGCGGTCCCAGGGTCCAGGGTCAGGTCGGCTGGAGAGCGGGAGGCAGGGAGAGGACCTCATGAGA-----GAGTTTTCTAT---ATCACAGGCAGGGTAGGGTGGAGAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     415575 301 -    863181 ---CATCCTCCCCAGAAGAGTCTCTGCAGGAGGCAGCGTCCGCAGTCTCCACCTCCCAGCAGTGGCGGCCGGCCCCGAAGCCCTGCGCGCCCAGCACAGCCGGGAGCTGATCGAAGCGCTTGGGGCCGTCAGGGGGCGCGGGCGTCCCTGGTGGGGCCAGTTGAACGCTGCGGCGGTCGGCGGAGATGAGCAGGCGGCGGTGTGCAGTCCCAGGGTCCAGGGTCAGGTCGGCTGGAGAGCGGGAGGCAGGGAGAGGACCTCATGAGA-----GAGTTTTCTAT---ATCACAGGCAGGGTAGGGTGGAGAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29567668 301 -  71996105 ---CATCCTCCCCAGAAGAGTCTCTGCAGGAGGCAGCGTCCGCAGTTTCCACCTCCCAGCAATGGCGGCCGGCCCCGAAGCCCTGCGCGCCCAGCACAGCTGGGAGCTGATCGAAGCGCTTGGGGCCGTCAGGGGGCGCGGGCGTCCCTGGTGGGGCCAGTTGAACGCTGCGGCGGTCGGCAGAGATGAGCAGGCGGCGGTGTGCGGTCCCAGGGTCCAGGGTCAGGTCGGCTGGAGAGCGGGAGGCAGGGAGAGGACCTCATGAGA-----GAGTTTTCTAT---ATCACAGTCAGGGTAGGGTGGAGAAT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     205749 301 -   1829203 ---CATCCTCCCCAGAAGAGTCTCTGCAGGAGGCAGCGTCCGCAGTCTCCACCTCCCAGCAGTGGCGGCCGGCCCTGAAGCCCTGCGCGCCCAGCACAGCCGGGAGCTCATCGAAGCGCTTGGGGCCGTCAGGGGGCGCAGGCGTCCCTGGTGGGGCCAGTTGAACGCTGCGGCGGTCGGCGGAGATGAGCAGGCGGCGGTGTGCGGTCCCAGGGTCCAGGGTCAGGTTGGCTGGAGAGCGGGAGGCAGGGAGAGGACTTCATGAGA-----GAGTTTTCTAT---ATCACAGGCGGGGTAGGGTGGAGAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30378213 299 + 171630274 ---CATCCTCCCCAGAAGAGTCTCTGCAGGAGGCGGCGTCCCCAGTCTCTACTTCCCAGCAGTGGCGGCCGGCCCCGAAGCCCTGCGCGCCCAGCACAGCCGGGAGCTGATCGAAGCGCGTGGGGGCGTCAGGGGGCGAGGGTGTTCCTGGTGGAGCCAGTTGGACGCTGCGGCGGTCGGCGGAGATGAGTAAGCGATGGTGCGCAGTTCCAGGGTCCAGGGTCAGGTCGGCTGAAGAGGGGGAGGGAAGGAGAGGACCTCAT--GA-----GAGTTTTCTAA---ATCACAGGTGGGGTAGGGTGGCGAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           201578 301 +    515838 ---CATCCTCCCCAGAAGAGTCTCTGCAGGAGGCGGCGTCCGCAGTCTCCACTTCCCAGCAGTGGCGGCCGGCCCCGAAGCCCTGCGCGCCCAGCACAGCCGGGAGCTGATCGAAGCGCGTGGGGGCGTCAGGGGGCAAGGGCGTCCCTGGTGGAGCCAGTTGGACGCTGCGGCGGTCGGCAGAGATGAGCAAGCGACGGTGTGCGGTCCCGGGGTCCAGGGTCAGGTCGGCTGAAGAGGGGGAGGCAGGGAGAGGACCTCATGAGA-----GAGTTTTCTAA---ACCACAGGTGGGGTAGGGTGGAGAAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     833681 301 -   1771730 ---CATCCTCCCCAGAAGAGTCTCTGCAGGAGGCTGCGTCCCCAGTCTCCACTTCCCAGCAGTGGCGGCCGGCCCCGAAGCCCTGCGCGCCCAGCACAGCCGGGAGCTGATCGAAGCGCGTGGGGGCATCAGGGGGCGAGGGCGTCCCTGGTGGAGCCAGTTGGACGCTGCGGCGGTCGGCGGAGATGAGCAAGCGACGGTGTGCGGTCCCAGGGTCCAGGGTCAGGTCGGCTGAAGAGGGGGAGGCAGGGAGAAGACCTCATGAGA-----GAGTTTTCTAA---ACCACAGTTGGGGTAGGGTGGAGAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     319483 301 -    383796 ---CATCCTCCCCAGAAGAGTCTCTGCAGGAGGCGGCGTCCCCAGTCTCCACTTCCCAGCAGTGGCGGCCGGCCCCAAAGCCCTGCGCGCCCAGCACAGCCGGGAGCTGATCGAAGCGCGTGGGGGCATCAGGGGGCGAGGGTGTCCCTGGTGGAGCCAGTTGAACGCTGCGGCGGTCGTCGGAGATGAGTAAGAGACGATGTGCGGTCCCAGGGTCCAGGGTCAGGTCGGCTGAAGAGGGGAAGGCAGGGAGAGGACCTCATGAGA-----GAGTTTTCTAA---ATCACAGGTGGGGTAGGGTGGAGAAT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               298601 297 + 123392446 ---CG---TCCCCAGAAGAGTCTGTGCAGGAGGCGGCGCCCGCGGTCTCCACCTCCCAGCAGTGGCGGCCAGCTCCGAAGCCCTGTGCGCCCAGCACAGCCGGGAGCTGGTCAAAGCGCGTAGGGCCGTCAGGGGGCGCGGGAGTCCCTGGTGGGGCCACCTGGACGCTGCGACGGTCAGCAGAGATGAGCAGGTGGCGGTGTGCGGTACCAGGGTCCAGTGTCAGGTCAGCTGGAGAGGAGGAAACAGGGAGAGGACTGCGTGAGA------GGGTTTCTGA---ATGAGAGGCAGGGTGGGGTGAAGAAT
i micMur3.chr6             C 0 I 33
s proCoq1.NW_012149775v1     102630 306 -   1411461 ---CATCCTCCCCAGAAGAGTCTGTGCAGGAGGCGGCGCCCGCGGTCTCCACCTCCCAGCAGTGGCGGCCAGCTCCGAAGCCCTGTGCGCCCAGCACGGCCGGGAGCTGGTCAAAGCGCGTAGGGCCGTCAGGGGGCGCGGGCGTCCCCGGTGGGGCCACCTGGACGCTGCGGCGGTCGGCAGAGATGAGCAAGTGGCGGTGCGCGGTGCCAGGGTCCAGGGTAAGGTCAGCTGGAGACAAGGAGACAGGAAGAGGACTGCGTGAGAGGAGAGGGGTTTCTGA---ATCAGAGGCAGGGCGGGGTGGAGAAT
i proCoq1.NW_012149775v1   C 0 I 39
s otoGar3.GL873550           249894 301 +  18854210 ---CATCCTCTCCAGAAGAATCTGTGCAGCAGGTGGTGTCCGTGGTCTCCACCTCCCAGCAGTGGCGGCCAGCACCAAAACCCTGTGCGCCCAGCACAGCGGGGAGCTGGTCAAAGCGTGTAGGGCCATCAGGAGGTGTGGGTGTCCCGGGTGGGGCCACTCGGACGCTGCGGCAGTCCGCAGAGATGAGCAGGTGGCGGTGTGCGGTGCCAGGGTCCAGGGTCAGGTCAGCTGGGGAGGGGGAAGTAGGAAGAGGACCGCGTCGGA-----GGCGTTTCAGA---ATCAGAGGCGGGGTAAGGTAGAGGAT
i otoGar3.GL873550         C 0 I 9
s mm10.chr17               58039988 297 -  94987271 ---CATCCTGAGCTGTAGAGTCTCTGAAGGACGCGCCTTCCGCGGTCTCCACCTCCCAGCAGTGGCGGCCTGACGCGAAGCCCTGCGCACCCAGCACCGCCGGGAGCTGATCAAAGCGCGCGGGGCTGTCCAGCGGCGCAGGCGTTCCGGGTGGAGCCAGACTCACGCCGCGGTAGTCAGAGGAGATGAGCAGATCACGGTGTGCTGTGCGAGGGTCGAGCGTCAGGTCAGCTGCAGAAGAGGGGAGAGGGGGAACAACACATGGTA------CGTTTTTTAA---GTC-TAG--AGAGAAGGGTGAAGAAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26293139 306 +  26524999 CTTGGTCCTCCCCAGAGGAGTCTGGGCCGCAGGCGGCATCCGCGGTCTCCACCTCCCAGCAGTGCCGGCCAGCCCCAAAGCCCTGTGCGCCCAGCACGGCCGGGAGCTGATCAAAGCGCGCAGGACCATCCGGGGGCGTGGGGGTCCCCGGGGGTGCTAGTTGGACGCTGCGTCGGTCGGCGGAGACAAGTAGGCGGCGGTGTGCAGTGCCCGGGTCCAGGGTCAAATCTGCTGCACGAAGAGAGGC-GGGAGAGAACAGCTTGAGG-----GGCTGGCCGAAGGGGTTCCTGGCAGGATGAGCCCGATAAT
i canFam3.chr35            C 0 C 0
e manLeu1.NW_012107142v1     252379 1845 -    735854 M

a score=257905.000000
s hg38.chr6_GL000254v2_alt  1415854 33 +   4827813 AGTCAACGAAGATCACGTAAAAGACT--GAGAGCT
s panTro5.chr6             30289121 33 + 175400573 AGTCAACGAAGATCACGTAAAAGACT--GAGAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30519572 33 + 173848474 AGTCAACGAAGATCACGTAAAAGACT--GAGAGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     226696 33 +   2037526 AGTCAACGAAGATCACGTAAAAGACT--GAGAGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74899723 33 + 122973662 AGTCAACGAAGATCACGTAAAAGACT--GAGAGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30773542 33 + 172585720 AGTCAACGGAGATCACGTAAAAGACA--GAGTGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30068679 33 - 170955103 AGTCAACGGAGATCACGTAAAAGACA--GAGTGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     317989 33 +   1495729 AGTCAACGGAGATCACGTAAAAGACA--GAGTGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     415876 33 -    863181 AGTCAACGGAGATCACGTAAAAGACT--GAGTGCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29567969 29 -  71996105 AGTCAATGGAGATCACGTAAAAGAC------TGCT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     206050 33 -   1829203 AGTCAACGGAGATCACGTAAAAGACT--GAGTGCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30378512 33 + 171630274 AGTCGACGGAGAGCATGTAGAAGACT--GAGTGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           201879 33 +    515838 AGTCGACGGAGAGCATGTAAAAGACT--GAGTGCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     833982 33 -   1771730 AGTCGACGGAGAGCATGTAAAAGACT--GAGTGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     319784 33 -    383796 AGTCGACGGAGAGCATGTAAAAGACT--GAGTACT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           250204 35 +  18854210 AGGGCATGGAGGGTAAGTAAGAGATTAAGAGTGCT
i otoGar3.GL873550         I 9 C 0
s mm10.chr17               58040285 12 -  94987271 ---------------------AGCAG--AGGTGCT
i mm10.chr17               C 0 I 2
s canFam3.chr35            26293445 23 +  26524999 GTGCAGCAGAGGGC----------CT--CAGGGAT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               298898 33 + 123392446 I
e proCoq1.NW_012149775v1     102936 39 -   1411461 I
e manLeu1.NW_012107142v1     252379 1845 -    735854 M

a score=146622.000000
s hg38.chr6_GL000254v2_alt  1415887 14 +   4827813 AGTGACCACACAAC
s panTro5.chr6             30289154 14 + 175400573 AGTGACCCCACAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30519605 14 + 173848474 AGTGACCCCACAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     226729 14 +   2037526 AGTGACCCCACAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74899756 14 + 122973662 AGTGACCCCACAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30773575 14 + 172585720 AGTGACCCCACAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30068712 14 - 170955103 AGTGACCCCACAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     318022 14 +   1495729 AGTGACCCCACAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     415909 14 -    863181 AGTGACCCCACAAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29567998 14 -  71996105 AGTGACTCCACAAC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     206083 14 -   1829203 AGTGACCCCACAAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30378545 11 + 171630274 AGT---CCCACAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           201912 14 +    515838 AGTGACCCCACAAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     834015 14 -   1771730 AGTGACCCCACAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     319817 13 -    383796 AGTGA-CCCACAAC
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     102975 14 -   1411461 AGTGACCTCAGAGC
i proCoq1.NW_012149775v1   I 39 C 0
s otoGar3.GL873550           250239 14 +  18854210 AGTGACCTCATAGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58040299 11 -  94987271 AGTCCTCTCGC---
i mm10.chr17               I 2 C 0
s canFam3.chr35            26293468 10 +  26524999 ----GCCCCACGAC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               298898 33 + 123392446 I
e manLeu1.NW_012107142v1     252379 1845 -    735854 M

a score=2919009.000000
s hg38.chr6_GL000254v2_alt  1415901 254 +   4827813 AGCTCAAAAGGCGACTG-------CAGGACCAAAAAGAAGGAAGGCATATGAAGAGCAGACCTGGGCAATATCAGACCT-TGTACTGATGCACCACTTCTGTAGAATTGGACCTGGGGAAGGATCATACTGGCCCAGTGC-AGGGAGCACAGCAGGAAGATCAAATGAGAGGTTGTCTCGTTTGTGGGGTTGGGGGAGGAAGAGTGAGGCTGATCTGACTTCGAGGGAGGAGTAAGGACTGATAC-CTCAATCTG---------------------CATCATCT-------G-
s panTro5.chr6             30289168 254 + 175400573 AGCTCAAAAGGTGACTG-------CAGGACCAAAAAGAAGGAAGGCATATGAAGAGCAGGCCTGGGCAATATCAGACCT-TGTACTGATGCACCACTTCTGTAGAACTGGACCTGGGGAAGGATCGTACTGGCCCAGTGC-AGGGAGCACAGCAGGAAGATCAAATGAGAGGTTGTCTCGTTTGTGGGGTTGGGGGAGGAAGAGTGAGGCTGATCTGACTTCGAGGGAGGAGTAAGGACTGATAC-CTCAATCTG---------------------CATCATCT-------G-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30519619 254 + 173848474 AGCTCAAAAGGCGACTG-------CAGGACCAAAAAGAAGGAAGGCATATGAAGAGCAGGCCTGGGCAATATCAGACCT-TGTACTGATGCACCACTTCTGTAGAATTGGACCTGGGGAAGGATCATACTGGCCCAGTGC-AGGGAGCACAGCAGGAAGATCAAATGAGAGGTTGTCTCGTTTGTGGGGTTGGGGGAGGAAGAGTGAGGCTGATCTGACTTCGAGGGAGGAGTAAGGACTGATAC-CTCAATCTG---------------------CATCATCT-------G-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     226743 254 +   2037526 AGCTCAAAAGGCGACTG-------CAGGACCAAAAAGAAGGAAGGCATATGAAGAGCAGGCCTGGGCAATATCAGACCT-TGTACTGATGCACCACTTCTGTAGAATTGGACCTGGGGAAGGATCATACTGGCCCAGTGC-AGGGAGCACAGCAGGAAGATCAAATGAGAGGTTGTCTCGTTTGTGGGGTTGGGGGAGGAAGAGTGAGGCTGATCTGACTTCGAGGGAGGAGTAAGGACTGATAC-CTCAATCTG---------------------CATCATCT-------G-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74899770 254 + 122973662 AGCTCAAAAGGCGGCTG-------CAGGACCAAAAAGGAAGAAGGCATATGAAGAGCAGGCCTGGGCAATATCGGACCT-TGTACTGATGCACCACTTCTGTAGAATTGGACCTGGGGAAGGATCATACTGGCCCAGTGC-AGGGAGCACAGCAGGAAGATCAAATGAGAGGTTGTCTGGTTTGTGGGGTTGGGGGAAGAAGAGTGAGGCTGATCTGACTTCGAGGGAGGAGTAAGGACTGATAC-CTCAATCTG---------------------CAGCATCT-------G-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30773589 254 + 172585720 AGCTCAAAAGGCGGCTG-------CAGGACCAAAAAGGAGCAAGGCATGTGAAGAGCAGGCCTGGGCAATATCGGACCT-TGTACTGATGCACCACTTCTGTAGAACTGGACCTGGGGAAGCATCATACTGGTCCAGGGC-AGGGAGCACAGCAGGAAGATCAAAGGAGAGGTTGTCCGGTTTGTGGGGTTGGGGGAGGAAGAGTGAGGCTGATCTGACTTGGAGGGAGGAGTAAGGACTGATAC-CTCAATCTG---------------------CAGCATCT-------G-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30068726 254 - 170955103 AGCTCAAAAGGCGGCTG-------CAGGACCAAAAAGGAGCAAGGCATGTGAAGAGCAGGCCTGGGCAATATCGGACCT-TGTACTGATGCACCACTTCTGTAGAACTGGACCTGGGGAAGCATCATACTGGTCCAGGGC-AGGGAGCATAGCAGGAAGATCAAAGGAGAGGTTGTCCGGTTTGTGGGGTTGGGGGAGGAAGAGTGAGGCTGATCTGACTTGGAGGGAGGAGTAAGGACTGATAC-CTCAATCTG---------------------CAGCATCT-------G-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     318036 254 +   1495729 AGCTCAAAAGGCGGCTG-------CAGGACCAAAAAGGAGCAAGGCATGTGAAGAGCAGGCCTGGGCAATATCGGACCT-TGTACTGATGCACCACTTCTGTAGAACTGGACCTGGGGAAGCATCATACTGGTCCAGGGC-AGGGAGCATAGCAGGAAGATCAAAGGAGAGGTTGTCCGGTTTGTGGGGTTGGGGGAGGAAGAGTGAGGCTGATCTGACTTGGAGGGAGGAGTAAGGACTGATAC-CTCAATCTG---------------------CAGCATCT-------G-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     415923 254 -    863181 AGCTCAAAAGGCGGCTG-------CAGGACCAAAAAGGAGCAAGGCATGTGAAGAGCAGGCCTGGGCAATATCGGACCT-TGTATTGATGCACCACTTCTGTAGAACTGGACCTGGGGAAGCATCATACTGGTCCAGGGC-AGGGAGCACAGCAGGAAGATCAAAGGAGAGGTTGTCCGGTTTGTGGGGCTGGGGGAGGAAGAGTGAGGCTGATCTGACTTGGAGGGAGGAGTAAGGACTGATAC-CTCAATCTG---------------------CAGCATCT-------G-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29568012 254 -  71996105 AGCTCAAAAGGCGGCTG-------CAGGACCAAAAAGGAGCAAGGCATGTGAAGAGCAGGCCTGGGCAATATCGGACCT-TGTACTGATGCACCACTTCTGTAGAACTGGACCTGGGGAAGCGTCATACTGGTCCAGGGC-AGGGAGCACAGCAGGAAGATCAAAGGAGAGGTTGTCCGGTTTGTGGGGTTGGGGGAGGAAGAGTGAGGCTGATCTGACTTGGAGGGAGGAGTAAGGACTGATAC-CTCAATCTG---------------------CAGCATCT-------G-
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     206097 254 -   1829203 AGCTCAAAAGGCGGCTG-------CAGGACCAAAACAGAGCAAGGCATGTGAAGAACAGGCCTGGGCAATATCGGACCT-TTTACTAATGCACCACTTCTGTAGAACTGGACCTGGGGAAGGATCATACTGGTCCAGGGC-AAGGAGCACAGCAGGAAGATCAAAGGAGAGGTTGTCCGGTTTGTGGGGTTGGGGGCGAAAGAGTGAGGCTGATCTGACTTCGAGGGAGGAGTAAGGACTGATAC-CTCAATCTG---------------------CAGCATCT-------G-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30378556 236 + 171630274 AGCTCAAA-----------------AGGACCCAAAAGAAGGAAGGCATTTGACGAGCAGGCTTGGGCAATATCGGACGT-TGCTCTGATGCACCACTTCTGTAGAAATGAACTTGGGGAAGGATCATACCGGCCCAGGCCCGGGGAGCACATCAGGAAAATCAAAGGAGAGG---------CTGTGGGGTTGAGGGAGGAAGAGTGAGGCTGATCTGACTTCGAGGGAGGAGTAAGGGCTGATAC-CTCAATCTG---------------------CAGCATCT-------G-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           201926 236 +    515838 AGCTCAAA-----------------AGGACCAAAAAGAAGGAAGGCATAAGACGAGCAGGCCTGGGCAATATGGGACGT-TGCTCTGATACACCACTTCTGTAGAACTGAACTTGGGGAAGGATCATACTGGCCCAGGTTGGGGGAGCACATCAGGAAGATCAAAGGAGAGA---------CTGTGGGGTTGGGGGAGGAAGAGTGAGGCTGATCTGACTTCGAGGGAGGAGTGAGGACTGATAC-CTCAATCTG---------------------CAGCATCT-------G-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     834029 236 -   1771730 AGCCCAAA-----------------AGGACCTAAAAGAAGGAAGGCATATGAAGAGCAGGCCTGGGCAATATTGGACGT-TGCTCCGATGCACCACTTCTGTAGAACGGAACTTGGGGAAGGATCATACCGGCCCAGGCCGGGGGAGCACATCAGGAAGATCAAAGGAGAGG---------ATGTGGGGTTGGGGGAGGAAGAGTGAGGCTGATCTGACTTCAAGGGAGGAGTGAGGACTGATAC-CTCAATCTG---------------------CAGCATCT-------G-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     319830 234 -    383796 AGCTCAAA-----------------AGGACCAAAAAGAAGGAAGGCATATGAAGAGCAGGCTTGGGCAATATTGGACTT-TGCTGTGATGCACCACTTCTGTAAAACTGAACTTGGGGAAGGATCATACTGGCCCAGGCT-GGGCAGCACATCAGGAAGATCAAAGGAGAGG---------CTGTGGGGTTGGGGGAGGAAGAGTGAGGCTGATCTGACTT-GAGGGAGGAGTAAGGACTGATAC-CTCAATCTG---------------------CAGCATCT-------G-
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               298931 260 + 123392446 ACCTCAAAAGGTGGCTG-------CAGGACCAGAAAGGAGGCAGACATAGGAAGAGCAGGCCTGGGCACTATCGAAACTGTGCACCAACGCACCACTTCTGTAGAATTAGACTT-GAGAAGGACCATACTGGCTCAGGGC-AGAGGGCACAGCACAGAGACCAATGCAAAGGTGGTCTGATTTGTAGGATT-GGGGAGGAAATGTGAGGCTGATACGACTTCTAGGGAGGTGTGAGGACTGATAC-CTCAATCTG---------------------CAGCGTCTGGGGTGAG-
i micMur3.chr6             I 33 C 0
s proCoq1.NW_012149775v1     102989 253 -   1411461 AGTTC-AAAGGCGGCTG-------CGGGACCAGAAAGGAGGCAGGCATATGAAGAGCAGGCCTGGGCAACATGGAAACTGTGCGCCAACGCGCCACTTCTGTAAAATTGGACTT-GGGAAGGACCATACTGGCTCAGGGC-AGAGGGCACAGCACAGAGACCAAAGGAAAGGTGGTCTGGTTTGTGGGATTGGGGGAGGAAGTGTGAGGCTGATCCAACTTCTAGGGAGGTGTGAGGACTGATAC-CTCAATCTG---------------------CAGCATCT-------G-
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           250253 249 +  18854210 AGTTCAAAAGGCAGCTG-------CAGGACAAAAAGGGAGGAAGAC-TATGAAGACCAGACCTAGGCAATATTGAAACTGTGCACTAATGTGTCACATCTATAGAATTGTATTT-GGGAAGGACCATGCTGGCTTAGGGC-AGGGGGCACAACTCAGAGATCAAAGGAAA---GGTCTGGTTTGTGTGGTTGGGAAAGGAA--GTGAGGCTGATCTGACTTCTAGGGAGGAGTGAGGACTGATACTCTCAATTTA---------------------CAGCACCT-------G-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58040310 247 -  94987271 AGTTCCCCTAGCGACCAGGGCGACCAGGATGGGAAGACACTAAGGCAC----AGAGCCGCTTTG----------------TGCTCTGATCCACCACTTTTGTGGAACTGGACTTGGACAAAGACTATGCTGGTC-------AAGGAACCCAGCATGGAGACCTGAGGGGAGG----CTGGTGTGTGGTGTTGGTGGAAGA-----GTGGCGGATGGGACTTATAGGGA-GAATGATGACTAATAC-TTGAATCTGcaagtgtggtggctttaatcccagcactt-------g-
i mm10.chr17               C 0 I 122
s canFam3.chr35            26293478 238 +  26524999 AGCTCCAGAGGCG--TG-------GAGGGCCAGAGTAGGGGAAGACAGGTGGAGGGCAGGGCTCAGTAGCGCTCAGCC--AGCACTGATCAGCCACTCCAGTGGACCTGGACTGGGAGAAGGACCTCGTTGGT---GGGC-AGGGGGCACAGTGTG-AGAGCCAAGGAGAGGTTGCCT-GTGTGTGGGCT----GGGAGAAGAGTGAAGCCGTCC--ACCTAACCGGAGGAGTA--GACTG-TAC-CCTTACTGG---------------------GTGCATCT-------GG
i canFam3.chr35            C 0 C 0
e manLeu1.NW_012107142v1     252379 1845 -    735854 M

a score=662234.000000
s hg38.chr6_GL000254v2_alt  1416155 56 +   4827813 GGGTGGGGCATGGGAGCTGGGTCAGCAAAA--------TGGGGAAGGTTCAT-CTAAA-----GAGAAAG
s panTro5.chr6             30289422 56 + 175400573 GGGTGGGGCATGGGAGCTGGGTCAGCAAAA--------TGGGGAAGGTTCAT-CTAAA-----GAGAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30519873 56 + 173848474 GGGTGGGGCATGGGAGCTGGGTCAGCAAAA--------TGGGGAAGGTTCAT-CTAAA-----GAGAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     226997 56 +   2037526 GGGTGGGGCATGGGAGCTGGGTCAGCAAAA--------TGGGGAAGGTTCAT-CTAAA-----GAGAAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74900024 56 + 122973662 GGGTGGGGCACCGGAGCTGGGTCAGCAAAA--------TGGGGAAGGTTCAT-CTAAA-----GAGAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30773843 61 + 172585720 GGGTGGGGCATGGGAGCTGGGTCAGCCAAA--------TGGGGAATGTTCAT-CTTTCTCTTTGAGAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30068980 61 - 170955103 GGGTGGGGCATGGGAGCTGGGTCAGCCAAA--------TGGGGAATGTTCAT-CTTTCTCTTTGAGAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     318290 61 +   1495729 GGGTGGGGCATGGGAGCTGGGTCAGCCAAA--------TGGGGAATGTTCAT-CTTTCTCTTTGAGAAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     416177 56 -    863181 GGGTGGGGCATGGGAGCTGGGTCAGCCAAA--------TGGGGATTGTTCAT-CTAAA-----GAGAAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29568266 56 -  71996105 GGGTGGGGCATGGGAGCTGGGTCAGCCAAA--------TGGGGAATGTTCAT-CTGAA-----GAGAAAG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     206351 56 -   1829203 GGGTGGGGCATGGGAGCTGGGTCAGCCAAA--------TGGGGAATGTTCAT-CTAAA-----GAGAAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30378792 56 + 171630274 GGGTGGAGAATGGGAGCTGGGTCAGCAAAA--------TGGGGATGGCTCAT-CTAAA-----GAGAAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           202162 56 +    515838 GGGTGGAGCATGGGAGCTGGGTCAGCAAAA--------TGGGGATGGCTCAT-CTAAA-----GAGAAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     834265 56 -   1771730 GGGTGGAGCATGGGAGCTGGGTCAGCAAAA--------TGGGGATGGCTCAT-TTAAA-----GAGAAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     320064 56 -    383796 GGGTGGAGCATGGGAGCTGGGTCAGCAAAA--------TGGGGATGGTTCAT-CTAAA-----GAGAAAG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               299191 56 + 123392446 GGGTGAGGTGTGGGAGCTGGGTGGGCAGGA--------TGGAGAAGGTGGAT-CTAAA-----GAGAAAG
i micMur3.chr6             C 0 I 22
s proCoq1.NW_012149775v1     103242 56 -   1411461 GGGTGGGGCGGGGGAGCTGGGTCAGCAGGA--------TGGGGAAGGTAGAT-CTAAA-----GAGAATG
i proCoq1.NW_012149775v1   C 0 I 2
s otoGar3.GL873550           250502 56 +  18854210 GGGTGGGGCGTGGGAGCTGGGTCAGCAGAA--------TGGGGAACGTGGCT-CTAAA-----GAGAAAG
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               58040679 63 -  94987271 GGGTTGGGTACGGGAGCCAGGTCAGCAAGACTACTTACTGAGAGAGACTGATACCTGA-----GAGAG--
i mm10.chr17               I 122 C 0
s canFam3.chr35            26293716 38 +  26524999 GGGTGGGGGTGGGGAGCTGGCTCAGCAGGA--------TGGGAAGA------------------------
i canFam3.chr35            C 0 C 0
e manLeu1.NW_012107142v1     252379 1845 -    735854 M

a score=264347.000000
s hg38.chr6_GL000254v2_alt  1416211 28 +   4827813 TCGTA-CTGATAC----T----GGAACCTCAAGTAAT
s panTro5.chr6             30289478 28 + 175400573 TCATA-CTGATAC----T----GGAACCTCAAGTAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30519929 28 + 173848474 TCATA-CTGATAC----T----GGAACCTCAAGTAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     227053 28 +   2037526 TCGTA-CTGATAC----T----GGAACCTCAAGTAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74900080 28 + 122973662 TCATA-CTGATAC----T----GGAACCTCAAGTGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30773904 28 + 172585720 CCATA-CTGACAC----T----GGAACCTCAAGTGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30069041 28 - 170955103 CCATA-CTGATAC----T----GGAACCTCAAGTGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     318351 28 +   1495729 CCATA-CTGATAC----T----GGAACCTCAAGTGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     416233 28 -    863181 CCATA-CTGATAC----T----GGAACCTCAAGTGAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29568322 28 -  71996105 CCATA-CTGATAC----T----GGAACCTCAAGTGAT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     206407 28 -   1829203 CCATA-CTGATAC----T----GGAACCTCAAGTGAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30378848 28 + 171630274 GCATA-CTGATAC----T----GGAACCTCAAGTGAC
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           202218 32 +    515838 GCATA-CTGATAC----TCAAGTGAACCTCAAGTGGC
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     834321 28 -   1771730 GCATA-CTGATAC----T----GGAACCTCAAGTGAC
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496904v1     320120 28 -    383796 GCATA-CTGATAC----T----GGAACCTCAGGTGAC
i aotNan1.NW_018496904v1   C 0 I 1
s proCoq1.NW_012149775v1     103300 29 -   1411461 TGACACCTGCTAC----T----GGAACCCCAAGTGAC
i proCoq1.NW_012149775v1   I 2 I 4
s otoGar3.GL873550           250560 29 +  18854210 TGATACCTGCTAC----T----GAAACCCCAGGTGAC
i otoGar3.GL873550         I 2 I 4
s mm10.chr17               58040742 28 -  94987271 ----A-CTGATACCAGAT----AGGAACTAGAGTGAT
i mm10.chr17               C 0 I 4
s canFam3.chr35            26293754  9 +  26524999 -------TGGTTC----T----GA-------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               299247 22 + 123392446 I
e manLeu1.NW_012107142v1     252379 1845 -    735854 M

a score=220036.000000
s hg38.chr6_GL000254v2_alt  1416239 15 +   4827813 GGGAGGGGCACAGGG
s panTro5.chr6             30289506 15 + 175400573 GGGAGGGGCACAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30519957 15 + 173848474 GGGAGGGGCACAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     227081 15 +   2037526 GGGAGGGGCACAGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74900108 15 + 122973662 GGGAGGGGTACAGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30773932 15 + 172585720 GGGAGGGGCACAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30069069 15 - 170955103 GGGAGGGGCACAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     318379 15 +   1495729 GGGAGGGGCACAGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     416261 15 -    863181 GGGAGGGGCACAGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29568350 15 -  71996105 GGGAGGGGCACAGGG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     206435 15 -   1829203 GGGAGGGGCACAGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30378877 15 + 171630274 GGGAGGGGCACAGGG
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           202251 15 +    515838 GGGAGGGGCACAGGA
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     834350 15 -   1771730 GGGAGGGGCACAGGG
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496904v1     320149 15 -    383796 GGGAGGGGCACAGGA
i aotNan1.NW_018496904v1   I 1 C 0
s micMur3.chr6               299269 15 + 123392446 GGGAGGGGCAGAGGG
i micMur3.chr6             I 22 C 0
s proCoq1.NW_012149775v1     103333 15 -   1411461 GGGAGGGGCGGAGGG
i proCoq1.NW_012149775v1   I 4 C 0
s otoGar3.GL873550           250593 15 +  18854210 GGGAGGGGCAAAGGG
i otoGar3.GL873550         I 4 C 0
s mm10.chr17               58040774 15 -  94987271 AGGAAGGGCAAAGGG
i mm10.chr17               I 4 C 0
s canFam3.chr35            26293763 12 +  26524999 -AGAAGGATGGAG--
i canFam3.chr35            C 0 C 0
e manLeu1.NW_012107142v1     252379 1845 -    735854 M

a score=707206.000000
s hg38.chr6_GL000254v2_alt  1416254 54 +   4827813 AGGAATCC-AAGGTATCCTGAGAAA----CCAGCCCACCCACCCACAGGAATTGGGGGG
s panTro5.chr6             30289521 54 + 175400573 AGGAATCC-AAGGTATCCTGAGAAA----CCAGCCCACCCACCCACAGGAATGGGGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30519972 54 + 173848474 AGGAATCC-AAGGTATCCTGAGAAA----CCAGCCCACCCACCCACAGGAATGGGGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     227096 47 +   2037526 AGGAATCC-AAGGTATCCTGAGAAA----CCAGCCCACCCACCCACAGGAAT-------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74900123 55 + 122973662 AGGAATCCAAAGGTATCCTGAGAAA----CCAGCCCACCAACCCACAGGAATGGGGGGG
i nomLeu3.chr1a            C 0 M 100
s rheMac8.chr4             30773947 52 + 172585720 AGGAATCC-AAGGTATCCTGAGAAA----CCAGCCCACCCACCCACAGGAATGGGGG--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30069084 52 - 170955103 AGGAATCC-AAGGTATCCTGAGAAA----CCAGCCCACCCACCCACAGGAATGGGGG--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     318394 52 +   1495729 AGGAATCC-AAGGTATCCTGAGAAA----CCAGCCCACCCACCCACAGGAATGGGGG--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     416276 52 -    863181 AGGAATCC-AAGGTATCCTGAGAAA----CCAGCCCACCCACCCACAGGAATGGGGG--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29568365 52 -  71996105 AGGAATCC-AAGGTATCCTGAGAAA----CCAGCCCACCCACCCACAGGAATGGGGG--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     254224 52 -    735854 AGGAATCC-AAGGTATCCTGAGAAA----CCAGCCCACCCACCCACAGGAATGGGGG--
i manLeu1.NW_012107142v1   M 1845 C 0
s colAng1.NW_012115577v1     206450 56 -   1829203 AGGAATCC-AAGGTATCCTGAGAAACCAGCCAGCCCACCCACCTACAGGAATGGGGG--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30378892 52 + 171630274 AGGAATCC-AAGGTATCCTGAGAAA----CCAGACCACCCACCCACAGCAATAGGCG--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           202266 52 +    515838 AGGAATCC-AAGGTATCCTGAGAAA----CCAGACCACCCACCCACTGGAATAGGCG--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     834365 52 -   1771730 AGGAATCC-AAGGTATCCTGAGGAA----CCAGACCACCCACCCACCGGAATAGGTG--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     320164 52 -    383796 AGGAATCC-AAGGTATCCTGAGAAA----CCAGACCACCCACCCACAGGAATAGGCA--
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               299284 52 + 123392446 AGGAATCC-AAGGTATCCTGAGAAA----CCAGCCCACCCACCCACAGAAATTAGTG--
i micMur3.chr6             C 0 I 2
s proCoq1.NW_012149775v1     103348 49 -   1411461 AGGAATCC-AAGGTATCCTGAGAAA----CCAGCCCACCCACCCACAGAA---AGTA--
i proCoq1.NW_012149775v1   C 0 I 2
s otoGar3.GL873550           250608 52 +  18854210 AGGAATCC-AGGGTATGCTGAGAAA----CCAGCCCACCCACCCACAGAAATAAGTG--
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               58040789 43 -  94987271 AGGAATCC-AAGGTATCTAGTAAAA----CCAGCCCATTTACCTTCCA-----------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26293775 26 +  26524999 AGGAGACC----------------C----CCAGC-------CCCATGGGGAGG------
i canFam3.chr35            C 0 C 0

a score=915633.000000
s hg38.chr6_GL000254v2_alt  1416308 93 +   4827813 -TGGGGTGGACAGTCCTATTTCTGTAGGGGTTGT-GGGGCAGAGGAGG---AGA--GCAGGTGGTGATAGCC--AGAGACCAGAA----AAAGAACCATTGACCTT
s panTro5.chr6             30289575 93 + 175400573 -TGGGGTGGACAGGCCTATTTCTGTAGGGGTTGT-GGGGCAGAGGAGG---AGA--GCAGGTGGTGATAGCC--AGAGACCAGAA----AAAGAACCATTGGCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30520026 93 + 173848474 -TGGGGTGGACAGGCCTATTTCTGTAGGGGTTAT-GGGGCAGAGGAGG---AGA--GCAGGTGGTGATAGCC--AGAGACCAGAA----AAAGAACCATTGGCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     227143 86 +   2037526 ---------ACAGGCCTATTTCTGTAGGGGTTGTGGGGGCAGAGGAGG---AGA--GCAGGTGGTGATAGCC--AGAGACCAGAA----AAAGAACCATTGGCCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30773999 94 + 172585720 --TGGGTGGACAGGCCTATTTCTGTAGAGGGTGT-GGGGCAGAGGAGG---AGA--GCAGGTGGTGATAGCC--AGAGACCAGAA--AGAAAGAACCATTGGTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30069136 94 - 170955103 --TGGGTGGACAGGCCTATTTCTGTAGAGGGTGT-GGGGCAGAGGAGG---AGA--GCAGGTGGTGATAGCC--AGAGACCAGAA--AGAAAGAACCATTGGTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     318446 94 +   1495729 --TGGGTGGACAGGCCTATTTCTGTAGAGGGTGT-GGGGCAGAGGAGG---AGA--GCAGGTGGTGATAGCC--AGAGACCAGAA--AGAAAGAACCATTGGTCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     416328 94 -    863181 --TGGGTGGACAGGCCTATTTCTGTAGAGGGTGT-GGGGCAGAGGAGG---AGA--GCAGGTGGTGATAGCC--AGAGACCAGAA--AGAAAGAACCATTGGTCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29568417 94 -  71996105 --TGGGTGGACAGGCCTATTTCTGTAGAAGGTGT-GGGGCAGAGGAGG---AGA--GCAGGTGGTGATAGCC--AGAGACCAGAA--AGAAAGAACCATTGGTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     254276 94 -    735854 --TGGGTGGACAGGCCTATTTCTGTAGAGGGTGT-GGGGCAGAGGAGG---AGA--GCAGGTGGTGATAGCC--AGAGACCAGAA--AGAAAGAACCATTGGTCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     206506 94 -   1829203 --TGGGTGGACAGGCCTATTTCTGTAGGGGGTGT-GGGGCAGAGGAGG---AGA--GCAGGTGGTGATAGCC--AGAGACCAGAA--AGAAAGAACCATTGGTCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30378944 94 + 171630274 --GGGGTGGACAGGCCTATTTCTATAGAGGGTGT-GGGGAAGAGGCGG---AGA--GCAAGTAGTGATAGCC--AGAGACCAGAA--AGAAAGAACCATTAACCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           202318 94 +    515838 --GGGGTGGACAGGCCTATTTCTATAGAGGGTGT-GGGGAAGAGGCGG---AGG--GCAAGTGGTGATAACC--AGAGACCAGAA--AGAAAGAACCATTGATCTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     834417 94 -   1771730 --GGGGTGGACAGGCCTATTTCTATAGAGGGTGT-GGGGAAGAGGCGG---AGA--GCAAGTGGTGACAGCC--AGAGACCAGAA--AGAAAGAACCATTGACCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     320216 94 -    383796 --GGGGTGGACAGGCCTATTTCTATAGAGGGTGT-GGGGAAGAGGCGG---AGG--GCAAGTGTTGATAGCC--AGAGACCAGAA--AGAACGAACCATTGATCTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               299338 62 + 123392446 ----TGTGGCCAGGCCTGTTCCTATAGGTGGTGT-AGG---GAAGGGG---AGA---------------------------------AAAAAGGACCATTGGCTCT
i micMur3.chr6             I 2 C 0
s proCoq1.NW_012149775v1     103399 64 -   1411461 ----TGTGGACAGGCCTGTTTCTATAGGTGGTGA-TAGCT-AAAGACA---AGA---------------------------------AAAAAGAACCATTGGCTCT
i proCoq1.NW_012149775v1   I 2 C 0
s otoGar3.GL873550           250662 89 +  18854210 ----TGTGGACAGGCCTACTTCTACAGGCGGTGT-GGGGC-AAGGAGG---AAAGAGCCGGTGGTGATAGCT--AGAGACC------AGAAAGAACCTTTGGCCTT
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               58040832 80 -  94987271 -------GGCCAGGCCCATTTCTATAGGAGGTGT--GGTCAGAGGAGATACAGA-----------AATTGCCTAAGGGACCAG------AAAGAGTCGCTGGCCTT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26293801 87 +  26524999 TATGAGTGCACTAGCTTCTTGTTACAG------T-GGGGGAGGAAGAA---AGG--GCAGGTGGTGATAGCTAAAGGGACCAGGAGTATTCAGAGCCAT-------
i canFam3.chr35            C 0 C 0
e nomLeu3.chr1a            74900178 100 + 122973662 M

a score=1402630.000000
s hg38.chr6_GL000254v2_alt  1416401  96 +   4827813 ATATGTATGGGGTGCT-TTGAAGAAAAATTTCTGGATTAGGGGTGTCAGAAGCAATCTGGA-CTG--------GGCAAGA-TGG-TGGATGACCAAGATGGTGGACCA
s panTro5.chr6             30289668  96 + 175400573 ATATGTATGGGGTGCT-TTGAAGAAAAATTTCTGGATTAGGGGTGTCAGAAGCAATCTGGA-CTG--------GGCAAGA-TGG-TGGATGACCAAGATGGTGGACCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30520119  96 + 173848474 ATATGTATGGGGTGCT-TTGAAGAAAAATTTCTGGATTAGGGGTGTCAGAAGCAATCTGGA-CTG--------GGCAAGA-TGG-TGGATGACCAAGATGGTGGACCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     227229  96 +   2037526 ATATGTATGGGGTGCT-TTGAAGAAAAATTTCTGGATTAGGGGTGTCAGAAGCAATCTGGA-CTG--------GGCAAGA-TGG-TGGATGACCAAGATGGTGGACCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74900278  94 + 122973662 ATATGTATGGGGTGC--TTGAAGAAAAATTTCTGGATTA-GGGTGCCAGAAGAAGTCTGGA-CTG--------GGCAAGA-TGG-TGGATGACCAAGAGGGTGGACCA
i nomLeu3.chr1a            M 100 C 0
s rheMac8.chr4             30774093  96 + 172585720 ATATGTATGAGGTGCT-TTGAAGAAAGATTTCTGGATTAGGGGTGCCGGAAGCAATCTGGA-CTG--------GGCAAGA-TGG-TGGATGACCAGGAGGGTGGACCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30069230  96 - 170955103 ATATGTATGAGGTGCT-TTGAAGAAAGATTTCTGGATTAGGGGTGCCGTAAGCAATCTGGA-CTG--------GGCAAGA-TGG-TGGATGACCAGGAGGGTGGACCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     318540  96 +   1495729 ATATGTATGAGGTGCT-TTGAAGAAAGATTTCTGGATTAGGGGTGCCGGAAGCAATCTGGA-CTG--------GGCAAGA-TGG-TGGATGACCAGGAGGGTGGACCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     416422  96 -    863181 ATATGTATGAGGTGCT-TTGAAGAAAGATTTCTGGATTAGGGGTGCTGGAAGCAATCTGGA-CTG--------GGCAAGA-TGG-TGGATGACCAGGAGGGTGGACCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29568511  96 -  71996105 ATATGTTTGAGGTGCT-TTGAAGAAAGATTTCTGGATTAGGGGTGCCAGAAGCAATCTGGA-CTG--------GGCAAGA-TGG-TGGATGACCAGGAGGGTGGACCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     254370  96 -    735854 ATATGTATGAGGTGCT-TTGAAGACAGATTTCTGGATTAGGGGTGCCGGAAACAATCTGGA-CTG--------GGCAAGA-TGG-TGGATGACCAGGAGGGTGGACCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     206600  96 -   1829203 ATATGTATGGGGTGCT-TTGAAGAAAGATTTCTGGATTAGGGGTGCCAGAAGCAATCTGGA-CTG--------GGCAAGA-TGG-TGGATGACCAAGAGGGTGGACCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30379038  96 + 171630274 GTATGTGTGGGGTGCT-TTGAAGAAAGATTTCTGAATTAGGGGTACCAGAAGCAATCTGGA-CTA--------GGTGAGA-TGA-TGGATGACCAAGAGGGTGAACCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           202412  96 +    515838 GTATGTATGGGGTGCT-TTGAAGAAAGATTTCTGAATTAGGGGTACCAGAAGCAATCTGGA-CTA--------GGTGAGA-TGA-TGGATGACCAAGAGGAGGAACCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     834511  96 -   1771730 GTATGTATGGGGTGCT-TTGAAGAAAGATTTCTGAATTAGGGGTACCAGAAGCAATCTGGA-CTA--------GGTGAGA-TGA-TGGATGACCAAGAGGGTGAACCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     320310  96 -    383796 GTATGTAGGGGGTGCT-TTGAAGAAAGATTTCTGAATTAGGGGTACCAGTAGCAATCTAGA-CTA--------GGTGAGA-TGA-TGGATGACCAAGAGGGTGAACCA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               299400  96 + 123392446 ATTTGCGTGGGGTGCT-TTGAGGAAAGAGTTCTGGATTAGGAGTGCCAGAAGCAATCTGGA-TTG--------GGTGGGA-TAG-TGGGTGACCAAGAGGGCAGACCT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     103463 104 -   1411461 ATATGTATGGGGTGCT-TTGAGGAAAGAGTTCTGGATTAAGAGTGCTAGAAGCAATCCGGA-TTGGGTGGGATGGTGGGA-TGG-TGGGTGACCAAGAGGGCAGACCC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           250751  97 +  18854210 ATCTCTATGGGGTGCT-TTCAGGAAAGATTTCTGGATTAGAGGTGCTAGAAGCAATCCGGA-TTG--------GATGGGATTGG-TGAGTGACCAAGAAGGTAGACCA
i otoGar3.GL873550         C 0 I 275
s mm10.chr17               58040912  94 -  94987271 GCAGGTATGGGGCGCT-TTAAGGAAATGCTTCTGGATTAGGAG--CTAGAAGGAATTTGTA-TTA--------AGTGAGA-TGGAGGGGTGACTAAG-GAATGGAACA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26293888  97 +  26524999 GTATGTATGGTTTGCTCTTGAGGAGAGGTTTTTCTATT-GGGTTGTTAGAAACAGTCTGGGTTTG--------GATGGGA-TGG-TGGGTGACGGAGAGGGTGGAGCA
i canFam3.chr35            C 0 C 0

a score=63998.000000
s hg38.chr6_GL000254v2_alt  1416497 4 +   4827813 CCTT
s panTro5.chr6             30289764 4 + 175400573 TCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30520215 4 + 173848474 TCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     227325 4 +   2037526 TCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74900372 4 + 122973662 TCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30774189 4 + 172585720 TCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30069326 4 - 170955103 TCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     318636 4 +   1495729 TCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     416518 4 -    863181 TCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29568607 4 -  71996105 TCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     254466 4 -    735854 TCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     206696 4 -   1829203 TCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30379134 4 + 171630274 TTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           202508 4 +    515838 TCTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     834607 4 -   1771730 TCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     320406 4 -    383796 TCTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               299496 4 + 123392446 TCTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     103567 4 -   1411461 TCTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           251123 4 +  18854210 ccTT
i otoGar3.GL873550         I 275 C 0
s canFam3.chr35            26293985 4 +  26524999 TCTT
i canFam3.chr35            C 0 I 122
e mm10.chr17               58041006 0 -  94987271 C

a score=2774601.000000
s hg38.chr6_GL000254v2_alt  1416501 207 +   4827813 CTCTAGGCAG-TTTAAAGAAGGGTAGA-GGCACCCTTCTTCT----TGGGAGTGAGTGAGGAAAGAAGGGT-CAAGG--AGATGCTGGGGT------CCC------CTTCCAGGGAGGAGTGATGAGA--GGTGGTGGAAGCAGAGATTT-TTGAGAGGCACCTAACCTTCAGGGATCTGTTGTTTGAATGTATG-AAAAAGGAAGAGGGAAAATGGCTGGAATATGAGGAA
s panTro5.chr6             30289768 207 + 175400573 CTCTAGGCAG-TTTAAAGAAGGGTAGA-GGCACCCTTCTTCT----TGGGAGTGAGTGAGGAAAGAAGGGT-CAAGG--AGATGCTGGGGT------CCC------CTTCCAGGGAGGAGTGACGAGA--GGTGGTGGAAGCAGAGATTT-TTGAGAGGCACCTAACCTTCAGGGATCTGTTGTTTGAATGTATG-AAAAAGGAAGAGGGAAAATGGCTGGAATATGAGGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30520219 207 + 173848474 CTCTAGGCAG-TTTAAAGAAGGGTAGA-GGCACCCTTCTTCT----TGGGAGTGAGTGAGGAAAGAAGGGT-CAAGG--AGATGCTGGGGT------CCC------CTTCCAGGGAGGAGTGACGAGA--GGTGGTGGAAGCAGAGATTT-CTGAGAGGCACCTAACCTTCAGGGATCTGTTGTTTGAATGTATG-AAAAAGGAAGAGGGAAAATGGCTGGAATATGAGGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     227329 207 +   2037526 CTCTAGGCAGTTTTAAAGAAGGGTAGA-GGCACCCTTCTTCT----TGGGAGTGAGTGAGGAAAGAAGGGT-CAAGG--AGATGCTGGGGT------CCC------CTTCCAGGGAGGAGTGACGAGA--GGTGGTGGAAGCAGAGATTT-TTGAGAGGCACCTAACCTTCAGGGATCTGTTG-TTGAATGTATG-AAAAAGGAAGAGGGAAAATGGCTGGAATATGAGGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74900376 207 + 122973662 CTCTAGGCAG-TTTAAAGAAGGGTAGA-GGCACCCTTCTTCT----TGGGAGTGAGTGAGGAAAGAAGGGT-CAAGG--AGATGCTGGGGT------CCC------CTTCCAGAGAGGAGTGACGAGA--GGTGGTGGAAGCAGAGATTT-TTGAGAGGCACCTAACCTTCAGGGATCTGTTGTTTGAATGTATG-AAAAAGGAAGAGGGAACATGGCTGGAATATGCGGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30774193 207 + 172585720 CTCTAGGCAG-TTTAAAGAAGGGTAGA-GGCACCCTTCTTCT----TGGGAGTGAGTGAGGAAAGAAGGGT-CAAGG--AGATGCTGGGGT------CCC------CTTCCAGAGAGGAGTGATGAGA--GGTGGTAGAAGCAGAGATTT-CTGAGAGGCACTTAACCTTCAGGGATCTGTTGTTTGAATGTATG-AAAAAGGAAGAGGGAAAATGGCTGGAATATGAGGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30069330 207 - 170955103 CTCTAGGCAG-TTTAAAGAAGGGTAGA-GGCACCCTTCTTCT----TGGGAGTGAGTGAGGAAAGAAGGGT-CAAGG--AGATGCTGGGGT------CCC------CTTCCAGAGAGGAGTGATGAGA--GGTGGTAGAAGCAGAGATTT-CTGAGAGGCACTTAACCTTCAGGGATCTGTTGTTTGAATGTATG-AAAAAGGAAGAGGGAAAATGGCTGGAATATGAGGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     318640 207 +   1495729 CTCTAGGCAG-TTTAAAGAAGGGTAGA-GGCACCCTTCTTCT----TGGGAGTGAGTGAGGAAAGAAGGGT-CAAGG--AGATGCTGGGGT------CCC------CTTCCAGAGAGGAGTGATGAGA--GGTGGTAGAAGCAGAGATTT-CTGAGAGGCACTTAACCTTCAGGGATCTGTTGTTTGAATGTATG-AAAAAGGAAGAGGGAAAATGGCTGGAATATGAGGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     416522 207 -    863181 CTCTAGGCAG-TTTAAAGAAGGGTAGA-GGCACCCTTCTTCT----TGGGAATGAGTGAGGAAAGAAGGGT-CAAGG--AGATGCTGGGGT------CCC------CTTCCAGAGAGGAGTGATGAGA--GGTGGTGGAAGCAGAGATTT-CTGAGAGGCACTTAACCTTCAGGGATCTGTTGTTTGAATGTATG-AAAAAGGAAGAGGGAAAATGGCTGGAATATGAGGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29568611 207 -  71996105 CTCTAGGCAG-TTTAAAGAAGGGTAGA-GGCACCCTTCTTCT----TGGGAGTGAGTGAGGAAAGAAGGGT-CAAGG--AGATGCTGTGGT------CCC------CTTCCAGAGAGGAGTGATGAGA--GGTGGTGGAAGCAGAGATTT-CTGAGAGGCACCTAACCTTCAGGGATGTGTTGTTTGAATGTATG-AAAAAGGAAGAGGGAAAATGGCTGGAATATGAGGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     254470 207 -    735854 CTCTAGGCAG-TTTAAAGAAGGGTAGA-GGCACCCTTCTTCT----TGGGAATGAGTGAGGAAAGAAGGGT-CAAGG--AGATGCTGGGGT------CCC------CTTCCAGAGAGGAGTGATGAGA--GGTGGTGGAAGCAGAGATTT-CTGAGAGGCACCTAACCTTCAGGGATCTGTTGTTTGAATGTATG-AAAAAGGAAGAGGGAAAATGGCTGGAATATGAGGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     206700 204 -   1829203 CTCTAGGCAG-TTTAAAGAAGGGTAGA-GGCACC---CTTCT----TGGGAGTGAGTGAGGAAAAAAGGGT-CAAGG--AGATGCTGGGGT------CCC------CTTCCAGAGAGGAGTGATGAGA--GGTGGTGGAAGCAGAGATTT-CTGAGAGGCACCTAACCTTCAGGGATCTGTTGTTTGAATGTATG-AAAAAGGAAGAGGGAAAATGGCTGGAATATGAGGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30379138 208 + 171630274 CTCTAGGCGG-TTTAAAGAAGGGTAGAGGGCACCCTTGTTCT----TGGGAGTGAGTGAGGAAGGCAGGGTCCAAAG--AGATGCTGGGGT------CTC------CTTCCAGAGAGGAGTGATGAGA--GGTGGTGGAAGCAGAGGTTTCCTGGGAGGCACCTAACCTTCAGGAAGCTGCTGTTTGAC--TATG-AAAAAGGAAGAGGGAAAATGGTTGAAATATGAGGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           202512 208 +    515838 CTCTAGGTGG-TTTAAAGAAGGGTGGAGGGCACCCTTGTTCT----TGGGAGTGAGCGAGGAAGGAAGGGT-CAAGG--AGATGCTAGGGT------CCC------CTTCCAGAGAGGAGTGATGAGA--GGTGGTGAAAGCAGAGATTTCCTGGGAGGCACCTAACCTTCAGGGAGCTGTTA-TTGACTGTATG-AAAAAGAAAGAGGGAAAATGGTTGGAATATGAGGAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     834611 203 -   1771730 CTCTAGGCAT-TTTAAAGAAGGATGGAGGGCACCCTTGTTCT----TGGGAGTGAGTGAGGAAGGAAGGGT-CAAGG--AGATGCTGGGGT------CCC------TTTCCAGAGAGGAGTGATGAGA--GGTGGTGGAAGCAGA--TTTCCTGGGACACACCTAACCTTCAGGGAGCTGTTGTTTG----TATG-AAAAAGGAAGAGGGAAAATGGCTGGAATATGAGGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     320410 209 -    383796 CTCTAGGTGG-TTTAAAGAAGGGTGGAGGGCACCCTTGTTCT----TGGGAGTGAGTGAAGAAGGAAGGGT-CAAGG--AGATGCTGGGGT------CCC------CTTCCAGAGAGGAGTGATGAGA--GGTGGTGGAAGCAGAGGTTTCCTGGGAGGCACCTAACCTTCAGGGAGCTGTTGTTTGAATGTATG-AAAAAGGAAGAGGGAAAATGGTTGGAATATGAGGAA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               299500 210 + 123392446 CTCTAGGCAT-TTTAAAGAAGGGTAGAGGGCATCCTTCTTTG----GGGGAGTGAGTAAGGAAGGAAGGGG-CAGGG--AGATGCTGAGGT------CCCAGATCTCTTCTGGAGAGGAGTGATGACA--GGTGATGGAAGCAGAGATTC-CTGAGAGGCAGGTGACCTCCGGGAGTCTGCTGTTTG----TGTG-AAAAAGAAAGAGAGAAAATGGCTAGAATATGAGGAA
i micMur3.chr6             C 0 I 340
s proCoq1.NW_012149775v1     103571 208 -   1411461 CTCTAGGCAG-TTTAAAGAAGGGTAGAGGGCATCTTTCTTTT----GGGGAGTGAGCAAGGAAGGAAGGGG-CAGGGACATATGCTGAGGT------CCCGAATCCCTTCTGGAGAGGACTGATGACA--GGTGATGGAGGCAGAGATTC-CTGAGAGGCAACTGACCTCCAGGAGTCTGTTGTTTG----TATG-AA----AAAGAGAGAAAATGGCTAGAATATAAGGAA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           251127 216 +  18854210 CTCTAGGCAG-TTTAAAGAAGGATAGAGGGTATCCTTCTTTTTGCATGTAAGCAAGCAAGGAAGGAAAGGG-CAGGG--AGATGCTGGGGG------TCCAGCTCCCTTCTGGAGAGAAATGATGAGAGGGGTAATGGAAGCAGAGATTC-CTGAGAGGCAACTGACCTCCAGGAACCTATTGTTCA----TATG-AAAAAAGAAGAGAGAACATGGCTGGAATATGAGGAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58041006 155 -  94987271 -----------TCTCGAGA---------GCTACC-------T----TGGGAATGAGCACAGAAG---GGGT-AGAGG--AGGTGCTGGAGTCTTGACCCC------CTTTCCAAGA------ATGGGA--GGAGGTGGAAGCAGGGATCT--------------------------TGTACTGTCTGGGGGTACATAAAAAACGTGAGGGAACGTGGCTGAGATCTGAGGAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26294111 157 +  26524999 CTCCAGGCAG-TTTAAAGAAGGGACAG-GGCAGCTGCAGTCA----TGGGGATGGGGGTGG------GGGT-TGGGC--AACTCCTCAGGA------GCT------------GCAGGGAAGGCCCAGA---GCCCTAGAAGCAGAGAGAT--GCAGAAGCAGCTGACCTCTACG-----GCTGTTTG----TAAG-AG----------------TTGCGGG-----------
i canFam3.chr35            I 122 C 0

a score=516566.000000
s hg38.chr6_GL000254v2_alt  1416708 40 +   4827813 TCGAGGATAGACATtgttataggctgaactgtgccctccc
s panTro5.chr6             30289975 40 + 175400573 TCGAGGATAGACATtgttataggctgaactgtgccctccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30520426 40 + 173848474 TCGAGGATAGACATtgttataggctgaactgtgccctccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     227536 40 +   2037526 TCGAGGATAGACATtgttataggctgaactgtgccctccc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74900583 40 + 122973662 TCAAGGATAGACATtgttataggctgaactctgccctccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30774400 40 + 172585720 TCGAGGATAGACATtgttataggctgaactgtgccctccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30069537 40 - 170955103 TCAAGGATAGACATtgttataggctgaactgtgccctccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     318847 40 +   1495729 TCCAGGATAGACATtgttataggctgaactgtgccctccc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     416729 40 -    863181 TCGAGGATAGACATtgttataggctgaactgtgccctccc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29568818 40 -  71996105 TCAAGGATAGACATtgttataggctgaactgtgccctccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     254677 40 -    735854 TCGAGGATAGACATtgttataggctgaactgtgccctccc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     206904 40 -   1829203 TCAAGGATAGATATtgttatatgctgaactgtgccctccc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30379346 40 + 171630274 TCGAGGATGGACGTtgttataggctgaattgtgccctccc
i calJac3.chr4             C 0 I 15
s saiBol1.JH378341           202720 40 +    515838 TCGAGGATGGACGTTGTTATAGGCTGAATTGTGCCTTCCC
i saiBol1.JH378341         C 0 I 422
s cebCap1.NW_016107755v1     834814 40 -   1771730 TCGAGGATGGACATtgttataggctgaactgtgcccaccc
i cebCap1.NW_016107755v1   C 0 I 9
s aotNan1.NW_018496904v1     320619 40 -    383796 TCGAGGATGGACATTGTTATAGGCCAAATTGTGCCCTCCC
i aotNan1.NW_018496904v1   C 0 I 15
s proCoq1.NW_012149775v1     103779 39 -   1411461 -TGAGGACAGACGTtgttagaggttgagttatatcccccc
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           251343 40 +  18854210 TTGAGGGTAGACATtattagaggttgaattgtatcccccc
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58041161 36 -  94987271 TTAAGGAT----ATTGTTCTGGGTTACATTGTGCCTCCTG
i mm10.chr17               C 0 I 2
s canFam3.chr35            26294268 29 +  26524999 -CCGTGGTGGACACTGTTAGAGg------tgttccc----
i canFam3.chr35            C 0 C 0
e micMur3.chr6               299710 340 + 123392446 I

a score=468229.000000
s hg38.chr6_GL000254v2_alt  1416748  65 +   4827813 ccactc---------------------------cacacacacaca------------------caaagatagg--------------------------------------------ttgaa--------------------gtcc---tccaa-acctc-------agaatgttaccttgt-----------------------------ttt
s panTro5.chr6             30290015  65 + 175400573 ccactc---------------------------cacacacacaca------------------caaagatagg--------------------------------------------ttgaa--------------------gtcc---tccaa-acctc-------agaatgttaccttgt-----------------------------ttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30520466  65 + 173848474 ccactc---------------------------cacacacacaca------------------caaagatagg--------------------------------------------ttgaa--------------------gtcc---tccaa-acctc-------agaatgttaccttgt-----------------------------ttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     227576  65 +   2037526 ccactc---------------------------cacacacacaca------------------caaagatagg--------------------------------------------ttgaa--------------------gtcc---tccaa-acctc-------agaatgttaccttgt-----------------------------ttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74900623  65 + 122973662 ccactc---------------------------cacacacacaca------------------caaagatagg--------------------------------------------ttgaa--------------------gtcc---tccaa-acctc-------agaatgttaccttat-----------------------------ttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30774440  70 + 172585720 ccactc-----------------------------cacacacaca------------------caaagatagg--------------------------------------------ttgaa--------------------gtcc---tccaa-acctcctttcaaagaatatgaccttac-----------------------------ttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30069577  70 - 170955103 ccactc-----------------------------cacacacaca------------------caaagatagg--------------------------------------------ttgaa--------------------gtcc---tccaa-acctcctttcaaagaatatgaccttac-----------------------------ttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     318887  70 +   1495729 ccactc-----------------------------tacacacaca------------------caaagatagg--------------------------------------------ttgaa--------------------gtcc---tccaa-acctcctttcaaagaatatgaccttac-----------------------------ttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     416769  70 -    863181 ccactc-----------------------------cacacacaca------------------caaagatagg--------------------------------------------ttgaa--------------------gtcc---tccaa-acctcctttcaaagaatatgaccttac-----------------------------ttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29568858  70 -  71996105 ctactc-----------------------------cacacacaca------------------caaagatagg--------------------------------------------ttgaa--------------------gtcc---tccaa-acctcctttcaaagaatatgaccttac-----------------------------ttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     254717  70 -    735854 ccactc-----------------------------cacacacaca------------------caaagatagg--------------------------------------------ttgaa--------------------gtcc---tccaa-acctcctttcaaagaatatgaccttac-----------------------------ttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     206944  67 -   1829203 ccactc-------------------------cacacacacacaca------------------caaagatagg--------------------------------------------ttgaa--------------------gtcc---tccaa-acctcc-------aaatgtgaccttac-----------------------------ttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30379401  92 + 171630274 ccactcgcgcgggcacacacacacacacacacacacacacacaca------------------caaagatagg--------------------------------------------ttgaa--------------------gtcc---tacaa-acttc-------cgaatgtgaccttgt-----------------------------tta
i calJac3.chr4             I 15 C 0
s cebCap1.NW_016107755v1     834863  61 -   1771730 cccccc-------------------------------cacacaca------------------caaagatagg--------------------------------------------ttgaa--------------------gtcc---cacaa-acctc-------agaatgtgaccttat-----------------------------tta
i cebCap1.NW_016107755v1   I 9 C 0
s aotNan1.NW_018496904v1     320674  66 -    383796 ccactc--------------------------acacacacacaca------------------caAAGatagg--------------------------------------------ttgaa--------------------gtcc---tacaa-acctc-------agaatgtgaccttat-----------------------------tta
i aotNan1.NW_018496904v1   I 15 C 0
s proCoq1.NW_012149775v1     103818  53 -   1411461 ----------------------------------------acaaa------------------aaatgatatg--------------------------------------------ttgaa--------------------gacc---cccaatacctc-------agaatgtgaccttat-----------------------------ttg
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           251383  59 +  18854210 -------------------------------------catgaaac------------------aaataatatg--------------------------------------------ttgaa--------------------gacctagcctaatacctc-------agaatgtgaccttat-----------------------------ttg
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58041199 181 -  94987271 ---------------------cagctgtggagttacatatgcatagcctcagcacattagaggcaaagacagggactagaggtccatgccagcctgggatacatagaaagagactctttaaaGGGGGTGGGGTGTCAGTTTTGTTC---CCCAA-TTTTC-------TGAAT-TTACCTTATGCGTGTGTGTGTGTGTGCGCGCGCGtgtgttt
i mm10.chr17               I 2 I 1
s canFam3.chr35            26294297  52 +  26524999 -----------------------------------------ctca------------------aacagatatg--------------------------------------------cagca--------------------gtct---cccagggcctc-------agaatgtgaactcag-----------------------------ctg
i canFam3.chr35            C 0 C 0
e micMur3.chr6               299710 340 + 123392446 I
e saiBol1.JH378341           202760 422 +    515838 I

a score=3750576.000000
s hg38.chr6_GL000254v2_alt  1416813 320 +   4827813 gaaacaggatctttacataggtaatcaagtt--aaaatgaaggtcattagggtgggctctaatcca----gattgctgactt-acaaaaa---gaggaaatttggacacagaaacaaatgcatacaaaaga----a----aatgtgcag---a-------------------cctatcacccaaagaacatgtgaggctaccagaggctaggagacaggcatggaacagattctgtctcatggccgtcagaaggaaccaacactgctgacaccttgatttcagacttctacctcctgaactttgag---at---aaatgtctgttgtttcagccacctactttgcggtgcttcattagagc----agtac
s panTro5.chr6             30290080 320 + 175400573 gaaacaggatctttacataggtaatcaagtt--aaaatgaaggtcattagggtgggctctaatcca----gattgctgactt-acaaaaa---gaggaaatttggacacagagacagatgcatacaaaaga----a----aatgtgcag---a-------------------cctatcacccaaagaacatgtgaggctaccagaggctaggagacaggcatggaacagattctgtctcatggccctcagaaggaaccaacactgctgacaccttgatttcagacttctacctcctgaactttgag---at---aaatgtctgttgtttcagccacctactttgcggtgcttcattagagc----agtac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30520531 320 + 173848474 gaaacaggatctttacataggtaatcaagtt--aaaatgaaggtcattagggtgggctctaatcca----gattgctgactt-acaaaaa---gaggaaatttggacacagagacaaatgcatacaaaaga----a----aatgtgcag---a-------------------cctatcacccaaagaacatgtgaggctaccagaggctaggagacaggcatggaacagattctgtctcatggccctcagaaggaaccaacactgctgacaccttgatttcagacttctacctcctgaactttgag---at---aaatgtctgttgtttcagccacctactttgcggtgcttcattaaagc----agtac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     227641 319 +   2037526 gaaacaggatctttacataggtaatcaagtt--aaaatgaaggtcattagggtgggctctaatcca----gattgctgactt-acaaaaa---gaggaaatttggacacagagacaaatgcatacaaaaga----a----aatgtgcag---a-------------------cctatcacccaaagaacatatgaggctaccagaggctagga-acaggcatggaacagattctgtctcatggccctcagaaggaaccaacactgctgacaccttgatttcagacttctacctcctgaactttgag---at---aaatgtctgttgtttcagccacctactttgcggtgcttcattagagc----agtac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74900688 320 + 122973662 gaaacaggatctttacataggtaatcaagtt--aaaatgaaagtcattagggtgggctctaatcca----gattgctgactt-ataaaaa---gaggaaatttggacacagagacaaatgcatacaaaaga----a----aatgtgcag---a-------------------cctatcacccaaagagcatgtgaggctaccagaggctaggagacaggcatggaacagattctgtctcatggccctcagaaggaaccaacactgctgacaccttgatttcagacttctacctcctgaactttgag---at---aaatgtctgttgtttaagccacctactttgtggtgcttcattacagc----agtac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30774510 320 + 172585720 gaaacaggatctttacagaggtaatcaagtt--aaaatgaaggtcattagggtgggctgtaatcca----gattgctgactt-ataaaaa---gaggaaatttggacacagagacaaatgcatacaaaaga----a----aatgtgcag---a-------------------cctatcacccaaagaacatgtgaggctaccagaggctaggagacaggaatggaacagattctgtctcatggccctcagaaggaaccaacactgctgacaccttcatttcagacttctacctcctgaactttgag---at---agatgtctgttgtttaagccatctactttgtggtgcttcattacagc----agtac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30069647 320 - 170955103 gaaacaggatctttacagaggtaatcaagtt--aaaatgaaggtcattagggtgggctgtaatcca----gattgctgactt-ataaaaa---gaggaaatttggacacagagacaaatgcatacaaaaga----a----aatgtgcag---a-------------------cctatcacccaaagaacatgtgaggctaccagaggctaggagacaggaatggaacagattctgtctcatggccctcagaaggaaccaacactgctgacaccttcatttcagacttctacctcctgaactttgag---at---agatgtctgttgtttaagccatctactttgtggtgcttcattacagc----agtac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     318957 320 +   1495729 gaaacaggatctttacagaggtaatcaagtt--aaaatgaaggtcattagggtgggctgtaatcca----gattgctgactt-ataaaaa---gaggaaatttggacacagagacaaatgcatacaaaaga----a----aatgtgcag---a-------------------cctatcacccaaagaacatgtgaggctaccagaggctaggagacaggaatggaacagattctgtctcatggccctcagaaggaaccaacactgctgacaccttcatttcagacttctacctcctgaactttgag---at---agatgtctgttgtttaagccatctactttgtggtgcttcattacagc----agtac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     416839 320 -    863181 gaaacaggatctttacagaggtaatcaagtt--aaaatgaaggtcattagggtgggctgtaatcca----gattgctgactt-ataaaaa---gaggaaatttggacacagagacaaatgcgtacaaaaga----a----aatgtgcag---a-------------------cctatcacccaaagaacatgtgaggctaccagaggctaggagacaggaatggaacagattctgtctcatggccctcagaaggaaccaacactgctgacaccttcatttcagacttctacctcctgaactttgag---at---agatgtctgttgtttaagccacctactttgtggtgcttcattacagc----agtac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29568928 320 -  71996105 gaaacaggatctttacagaggtaatcaagtt--aaaatgaaggtcattagggtgggctgtaatcca----gattgctgactt-ataaaaa---gaggaaatttggacacagagacaaatgcatacgaaaga----a----aatgtgcag---a-------------------cctatcacccaaagaacatgtgaggctaccagagtctaggagataggaatggaacagattctgtctcatggccctcagaaggaaccaacactgctgacaccttcatttcagacttctacctcctgaactttgag---at---agatgtctgttgtttaagccacctactttgtggtgcttcattatagg----agtac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     254787 320 -    735854 gaaacaggatctttacagaggtagtcaagtt--aaaatgaaggtcattagggtgggctgtaatcca----gattgctgactt-ataaaaa---gaggaaatttggacacagagacaaatgcatacaaaaga----a----aatgtgcag---a-------------------cctatcacccaaagaacatgtgaggctaccagaggctaggagacaggaatggaacagattctgtctcatggccctcagaaggaaccaacactgctgacactttcatttcagacttctacctcctgaactttgag---at---agatgtctgttgtttaagccacctactttgtggtgcttcattacagc----agtac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     207011 316 -   1829203 gaaacaggatctttacagaggtaatcaagtt--aaaatgaaggtcattagggtgggttgtaatcca----gattgctgactt-ataaaaa---gaggaaatttggacacagagacaaatgcatacaaaaga----a----aatgtgcag---a-------------------cctatcacccaaagaacatgtgaggctaccagaggctaggagacaggaatggaacagattctgtctcatggccctcagaaggaaccaacactgctgacaccttcatttcagacttctacctcctgaactttg----------agatgtctgttgtttaagccacctactttgcggtgcttcattacagc----agtac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30379493 316 + 171630274 gaaacaggatctttacagaggtaatcaagtt--aaaatgagggtcatcagcatggcccctaatcca----gattgctgactt-acagaaa---gagaaaatttgggcacagagacaaatgcatgcaaaaga----a----aatgtgcag---g-------------------cctgtcacccaaagcaa--gcgaggctaccagagggcaggagacaggcagggaacaggttctgtctcatggccttcagaaggaagcgacactacccacgccttgatttaaaacttctacctcctgaactccaag---at---aaacgtcagtggtttaagccccctgttttatag-acttcattgcagc----agtg-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           203182 305 +    515838 gaaaCaggatctttacagaggtaatcaagtt--aaaatgatggtcattagggtggcccctaataca----gattgctgactt-acaaaaa---gagaaaatttgggcac--agacaaatgcatacaaaaga----a----aatgtgcag---a-------------------tctgtcacccaaagcacatgtgaggctaccagagggcaggagacaggcagggaacagac----tctcatggccttcagaagga---------accaacaccttgatttcagacttgtacctcctgaagtctgag---at---aaatgttagtggtttaagccacctattttatagtacttcattacagc----agtac
i saiBol1.JH378341         I 422 C 0
s cebCap1.NW_016107755v1     834924 320 -   1771730 gaaacaggatctttacagaggtaatcaagtt--aaaatgagggtcattagcatggcccctaatcca----gattgctgactt-acaaaaa---gagaaaatttgggcacagagacaaatgcatacaaaaga----g----aatgtgcag---a-------------------cctgtcacccaaagcacatgtgaggctaccagaggggaggagagaggcagggaacagattctgtctcatggccttcagaaggaaccaacactgccgacaccttgatttcagacttctacctcctgaactctgag---at---aaatgtcagtggtttaagccacctattttctagtacttcattacagc----agtac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     320740 310 -    383796 gaaacaggatctttaccgaggtaatcaagtt--aaaatgagggtcattagcgtggcccctaatcca----gattgctgactc-acaaaa-----agaaaatttggg--------caaacgcatacaaaagg----a----aatgagcag---a-------------------cctgtcacccaaagcacatgtgaggctaccagagggcaggagacaggcagggaacagactctgtctcatggccttcagaaggaaccaacactgccgacaccttgatttcagacttctatctcctgaactctgag---gt---aaatgtcagtggtttaagatacctaatttacagtatttcattacagc----agtac
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     103871 320 -   1411461 gaaataggatctttacagaggtaatcaattt--aaaatga-agtcattagtttaggccc-agtccaatatgattactgactt-----------agagaagtttggacag--agccaaatgcatacaaaagg----aagacaatatgcagacca-------------------cctgtaacccaaggggcatgtgagac--ccagaagctaggagagaggcatggaacaaa--ttctcgcatggccctcagaaagaacc-acactgctaacaccttgatttcggagttctacctcccgaacttcgagataat---agatgtctgttgctgaagcacct-actttgtggtactttgttaca-cagcaagcat
i proCoq1.NW_012149775v1   C 0 I 3
s otoGar3.GL873550           251442 312 +  18854210 taaaaaggatctttacaggggcaatcaagtt--aaaatga-ggtaatttggttagactc-aatccaggatgattgctgactt-attaa-----agggaagtttggacac--agccgaaagcatacacaagg----aagacaatatgtggacca-------------------cctctaactcaagaaacatgtgaaactaccagaagccaggagaggggcatggaacaaattttctctcatggccctcagaaggaacc-acactgctgacaccttgatctcggaattctacctccagaactttgagataat---aa----ctgttgctgaagccacc----------tactttgtTACA-C----AGCAT
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58041381 295 -  94987271 aggggaggattttcacaaaggtaatcaggttaaaaaatga-gattattacagtaggccctgatgcaggatgatttctatctt-aaaagagagtggagacacttgcacacagagacaggtacctagaaggaagccca----ggtgagacc---a-------------------tctgtggaccaaggaagtattgaggtttccaga-gccaggagaga-gcatggaacagatttctcct--tagccctcag---------------------------------acttctatct-ctagactttgaa---gt-gcgaatggtggttgttcaagccaccta-tttgtgacacttcattatttc----agctg
i mm10.chr17               I 1 C 0
s canFam3.chr35            26294349 341 +  26524999 gaaagagg--ctttacagagctcattcagtt--aaagtga-ggccgttagggcaggccctagtctgataggacttgtgtctttacaaaaa---gaggaggtttggacccctagacaaatgagcatggaggg----gaagcaacatgaag---acgacacagggagaaggcaccccataggccctggagcatctgcagctcccagacgccagcagacaggc-tccatcagatttgcccccacagccct---aacgatccaatcccgccaacacctgtctttccatcgtctatgtccagaactgtggg---actgggatcatctgctgttgcagccctc-agcaggtggtgctc--tgagggc----tgccc
i canFam3.chr35            C 0 C 0
e micMur3.chr6               299710 340 + 123392446 I

a score=7557697.000000
s hg38.chr6_GL000254v2_alt  1417133 525 +   4827813 taggaaactaatgcaGACATCAAAAAGGACCTGATCACTTTTTAGGGCTAAAAGGAAGAAAATCTAACACAGActttcattcaattcccttccctcccttcttctttccttacctGTCAGTCTATGAAGCATTTTTTTGACCACTGGATAATCTTCAGGGAGATCATCCTCTGAATTAGATGACTTGGATGTTGGGACTTCAAATCTACACAGATGAGGG-GAAGGGTCAGGAAATCA----------------GCCCT-------CTGATCCTAATGCCCC-CACGCATACCCCACTCACATCTCTGGAGGAAGAAGGGATGAGACTATA-CCCCAGAAAACCTGCCTATTAATGGGAA------CAAAGGTGTGGGCCCAGTGAGAACGTGATGGCTATGGCAGCTGGT-GAGAAAAGGAGGGAACAG--AAAAGTGGAACTCACCGTCTCCATGTCTTCCTCATATCCTAGGATGGGCAGAAACAAACATG-GATGTGAGCTCTGGGCTTCATTCCCTGGGGCATCCTTCCCTATCT-CTCCCCTCCTCAGGTGAGTTC
s panTro5.chr6             30290400 525 + 175400573 taggaaactaatgcaGACATCAAAAAGGACCTGATCACTTTTTAGGGCTAAAAGGAAGAAAATCTAACACAGACTCTCATTCAAttcccttccctcccttcttctttccttacctGTCAGTCTATGAAGCATGTTTTTGACCACTGGATAATCTTCAGGGAGATCATCCTCTGAATTAGATGACTTGGGTGTTGGGACTTCAAATCTACACAGATGAGGG-GAAGGGTCAGGAAATCA----------------GCCCT-------CTGATCCTAATGCCCC-CACGCATACCCGACTCACATCTCTGGAGGAAGAAGGGATGAGGCTATA-CCCCAGAAAACCTGCCTATTAATGGGAA------CAAAGGTGTGGGCCCAGTGAGAACGTGATGGCTATGGCAGCTGGT-GAGAAAAGGAAGGAACAG--AAAAGTGGAACTCACCGTCTCCATGTCTTCCTCATATCCTAGGATGGGCAGAAACAAACATG-GATGTGAGCTCTGGGCTTCATTCCCTGGGGCATCCTTCCCTATCT-CTCCCCTCCTCAGGTGAGTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30520851 525 + 173848474 taggaaactaatgcaGACATCAAAAAGGACCTGATCACTTTTTAGGGCTAAAAGGAAGAAAATCTAACACAGACTCTCATTCAAttcccttccctcccttcttctttccttacctGTCAGTCTATGAAGCATGTTTTTGACCACTGGATAATCTTCAGGGAGATCATCCTCTGAATTAGATGACTTGGGTGTTGGGACTTCAAATCTACACAGATGAGGG-GAAGGGTCAGGAAATCA----------------GCCCT-------CTGATCCTAATGCCCC-CACGCATACCCGACTCACATCTCTGGAGGAAGAAGGGATGAGGCTATA-CCCCAGAAAACCTGCCTATTAATGGGAA------CAAAGGTGTGGGCCCAGTGAGAACGTGATGGCTATGGCAGCTGGT-GAGAAAAGGAAGGAACAG--AAAAGTGGAACTCACCGTCTCCATGTCTTCCTCATATCCTAGGATGGGCAGAAACAAACATG-GATGTGAGCTCTGGGCTTCATTCCCTGGGGCATCCTTCCCTATCT-CTCCCCTCCTCAGGTGAGTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     227960 522 +   2037526 taggaaactaatgcaGACATCAAAAAGGACCTGATCACTTTTTAGGGCTAAAAGG-AGAAAATCTAACACAGACTCTCATTCAAttcccttccctcccttcttctttccttacctGTCA-TCTATGAAGCATGTTTTTGACCACTGGATAATCTTCAGGGAGATCATCCTCTGAATTAGATGACTTGGGTGTTGGGACTTCAAATCTACACAGATGAGGG-GAAGGGTC-GGAAATCA----------------GCCCT-------CTGATCCTAATGCCCC-CACGCATACCCCACTCACATCTCTGGAGGAAGAAGGGATGAGGCTATA-CCCCAGAAAACCTGCCTATTAATGGGAA------CAAAGGTGTGGGCCCAGTGAGAACGTGATGGCTATGGCAGCCGGT-GAGAAAAGGAAGGAACAG--AAAAGTGGAACTCACCGTCTCCATGTCTTCCTCATATCCTAGGATGGGCAGAAACAAACATG-GATGTGAGCTCTGGGCTTCATTCCCTGGGGCATCCTTCCCTATCT-CTCCCCTCCTCAGGTGAGTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74901008 525 + 122973662 taggaaactaatgcaGACATCAAAAAGGACCTGATCACTTCTTAGGGCTAAAAGGAAGAAAATCTAACACAGACTCTCATTCAAttcccttccctcccttcttctttccttacctGTCAGTCTATGAAGCATGTTTTTGACCACTGGATAATCTTCAGGGAGATCATCCTCTGAATTAGATGACTTGGATGTTGGGACTTCGAATCTAGACAGATGAGGG-GAAGGGTTAGGAAATCA----------------GCCCT-------CTGATCCTAATGTCCC-CACGCATACCCCACTCACATCTCTAGAGGAAGAAGGGATGAGGCTATA-CCCCAGAAAACCTGCCTATTAATGGGAA------CAAAGGTGCTGGCGCAGTGAGAATGTGATGGCTATGGCAGCTGGT-GAGAAAAGGAAGGAACAG--AAAAGTGGAACTCACCGTCTCCATGTCTTCCTCATATCCTAGGATGGGCAGAAACAAACATG-AATGTGAGCTCTGGGCTTCATTCCCTGGGGCATCCTTCCCTATCT-CTCCCCTCCTCAGGTGAGCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30774830 525 + 172585720 taggaaactaatgcaGACATCAAAAAGGACCTGATCACTTTTTAGGGCTAAAAGGAAGAAAATCTAACACAGACTGTCATTCAAttcccttccctcccttcttctttccttacctGTCAGTCTATGAAGCATGTTTTTAACCACTGGATAGTCTTCAGGGAGATCATCCTCTGATTTAGATGACTTAGGTGTTGGGACTTCAAATCTAGACAGATGAGGG-GAAGGGTCAGGAAATCA----------------GCCCT-------CTGCTGCTAATGCCCC-CACGCATACCCCATTCACATCTCTGGAGGGAGAAGGGATGAGGCTGTA-CCCCAGAAAACCTGCCTATTAATGGCAA------CAAAAGTGTGGGCCCAGTGAGAACGTGATGGCTATGGCAGCTCGT-GTGAAAAGGAAGGAACAG--AAAAGTGGAACTCACCGTCTCCATGTCTTCCTCATATCCTAGGATGGGCAGAAACAAACATG-GATGTGAGCTCTGGGCTTCATTCCCTGGGGCATCCCTCCCTATCT-CCCCCCTCCTCAGGTGAGCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30069967 525 - 170955103 taggaaactaatgcaGACATCAAAAAGGACCTGATCACTTTTTAGGGCTAAAAGGAAGAAAATCTAACACAGACTGTCATTCAAttcccttccctcccttcttctttccttacctGTCAGTCTATGAAGCATGTTTTTGACCACTGGATAATCTTCAGGGAGATCATCCTCTGATTTAGATGACTTAGGTGTTGGGACTTCAAATCTAGACAGATGAGGG-GAAGGGTCAGGAAATCA----------------GCCCT-------CTGCTGCTAATGCCCC-CACGCATACCCCATTCACATCTCTGGAGGGAGAAGGGATGAGGCTGTA-CCCCAGAAAACCTGCCTATTAATGGCAA------CAAAAGTGTGGGCCCAGTGAGAACGTGATGGCTATGGCAGCTCGT-GTGAAAAGGAAGGAACAG--AAAAGTGGAACTCACCGTCTCCATGTCTTCCTCATATCCTAGGATGGGCAGAAACAAACATG-GATGTGAGCTCTGGGCTTCATTCCCTGGGGCATCCCTCCCTATCT-CCCCCCTCCTCAGGTGAGCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     319277 525 +   1495729 taggaaactaatgcaGACATCAAAAATGACCTGATCACTTTTTAGGGCTAAAAGGAAGAAAATCTAACACAGACTGTCATTCAAttcccttccctcccttcttctttccttacctGTCAGTCTATGAAGCATGTTTTTGACCACTGGATAATCTTCAGGGAGATCATCCTCTGATTTAGATGACTTAGGTGTTGGGACTTCAAATCTAGACAGATGAGGG-GAAGGGTCAGGAAATCA----------------GCCCT-------CTGCTGCTAATGCCCC-CACGCATACCCCATTCACATCTCTGGAGGGAGAAGGGATGAGGCTGTA-CCCCAGAAAACCTGCCTATTAATGGCAA------CAAAAGTGTGGGCCCAGTGAGAACGTGATGGCTATGGCAGCTCGT-GTGAAAAGGAAGGAACAG--AAAAGTGGAACTCACCGTCTCCATGTCTTCCTCATATCCTAGGATGGGCAGAAACAAACATG-GATGTGAGCTCTGGGCTTCATTCCCTGGGGCATCCCTCCCTATCT-CCCCCCTCCTCAGGTGAGCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     417159 525 -    863181 taggaaactaatgcaGACATCAAAAAGGACCTGATCACTTTTTAGGGCTAAAAGGAAGAAAATCTAACACAGACTGTCATTCAAttcccttccctcccttcttctttccttacctGTCAGTCTATGAAGCATGTTTTTGACCACTGGATAATCTTCAGGGAGATCATCCTCTGATTTAGATGACTTAGGTGTTGGGACTTCAAATCTAGACAGATGAGGG-GAAGGGTCAGGAAATCA----------------GCCCT-------CTGCTGCTAATGCCCC-CACGCATACCCCATTCACACCTCTGGAGGGAGAAGGGATGAGGCTGTA-CCCCAGAAAACCTGCCTATTAATGGCAA------CAAAAGTGTGGGCCCAGTGAGAACGTGATGGCTATGGCAGCTCGT-GTGGAAAGGAAGGAACAG--AAAAGTGGAACTCACCGTCTCCATGTCTTCCTCATATCCTAGGATGGGCAGAAACAAACATG-GATGTGAGCTCTGGGCTTCATTCCCTGGGGCATCCCTCCCTATCT-TCCCCCTCCTCAGGTGAGCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29569248 526 -  71996105 taggaaactaatgcaGACATCAAAAAGGACCTGATCACTTTTTAGGGCTAAAAGGAAGAAAATCTAACACAGACTGTCATTCAAttcccttccctcccttcttctttccttacctGTCAGTCTATGAAGCATGTTTTTGACCACTGGATAATCTTCAGGGAGATCATCCTCTGATTTAGATGACTTAGGTGTTGGGACTTCAAATCTAGACAGATGAGGG-GAAGGGTCAGGAAATCA----------------GCCCT-------CTGCTGCTAATGCCCC-CACGCATACCCCATTCACATCTCTGGAGGGAGAAGGGATGAGGCTGTA-CCCCAGAAAACCTGCCTATTAATGGCAA------CAAAAGTGTAGGCCCAGTGAGAACGTGATGGCTATGGCAGCTTGT-GTGAAAAGGAAGGAACAG--AAAAGTGGAACTCACCGTCTCCATGTCTTCCTCATATCCTAGGATGGGCAGAAACAAACATG-GATGTGAGCTCTGGGCTTCATTCCCTGGGGCATCCCTCCCTATCTCCCCCCCTCCTCAGGTGAGCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     255107 525 -    735854 taggaaactaatgcaGACATCAAAAAGGACCTGATCACTTTTTAGGGCTAAAAGGAAGAAAATCTAACACAGACTGTCATTCAAttcccttccctcccttcttctttccttacctGTCAGTCTATGAAGCATGTTTTTGACCACTGGATAATCTTCAGGGAGATCATCCTCTGATTTAGATGACTTAGGTGTTGGGACTTCATATCTAGACAGATGAGGG-GAAGGGTCAGGAAATCA----------------GCCCT-------CTGCTGCTAATGCCCC-CACGCATACCCCATTCACATCTCTGGAGGGAGAAGGGATGAGGCTGTA-CCCCAGAAAACCTGCCTATTAATGGCAA------CAAAAGTGTGGGCCCAGTGAGAACGTGATGGCTATGGCAGCTCGT-GTGAAAAGGAAGGAACAG--AAAAGTGGAACTCACCGTCTCCATGTCTTCCTCATATCCTAGGATGGGCAGAAACAAACATG-GATGTGAGCTCTGGGCTTCATTCCCTGGGGCATCCCTCCCTATCT-CCCCCCTCCTCAGGTGAGCTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     207327 525 -   1829203 taggaaactaatgcaGACATCAAAAAGGACCTGATCACTTTTTAGGGCTAAAAGGAAGAAAATCTAACACAGATTGTCAttcacttcccttccctcccttcttctttccttacctGTCAGTCTATGAAGCATGTTTTTGACCACTGGATAATCTTCAGGGAGATCATCCTCTGATTTAGATGACTTAGGTGTTGGGACTTCAAATCTAGACAGATGAGGG-GAAGGGTCAGGAAATCA----------------GCCCT-------CTTATGCTAATGCCCC-CACGCATACCCCATTCACATCTCTGGAGGGAGAAGGGATGAGGCTATA-CCCCAGAAAACCTGCCTATTAATGGCAA------CAAAAGTGTGGGCCCAGTGAGAACGTGATGGCTATGGCAGCTGGT-GCGAAAAGGAAGGAACAG--AAAAGTGGAACTCACCGTCTCCATGTCTTCCTCATATCCTAGGATGGGCAGAAACAAACATG-GATGTGAGCTCTGGGCTTCATTCCCTGGGGCATCCCTCCCTATCT-CCCCCCTCCTCAGGTGAGCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30379809 525 + 171630274 caggaaactaatgcaGACATAAGAAAGGACCTGATC-TTTTTTAGGGCCAAAAGGGAGAAAATCTAACACAGACGCTCATTCAATTCCCTTCCCTCCCTTCTTCCCTCCTTACCTGTCAGTCTGTGAAGCATGTTTTTGACCACTGGATAATCTTCAGGGAGATCAGCCTCTGGATTAGGTGACTTGGGTGCTGGGACTTCAAATCTAGACAGATGAGGG-GAAGGGTCAGCAAATCA----------------GCCCT-------CTGATGCTAATGCCCCACACACATACCTCACTTGAATCTCTGGAGGGAGAAGGGGTGAGGCTATACCCCCAGAAAACCTGCCTATTAATGGGAA------CAAAGATGTGGGCCCAGTGGGAACATGATGGCTATGGTAGCTGCTAGTGAAAAGGAAAGAACAG-TAAAAGCAGAACTCACCGTCTCCACGTCTTCCTCATATCCTACGATGGACAGAAACAAACATG-GATGTGAGGTCTGGGCTTCATTCTG--GGGCATCCTTCCCTATCTTCCCCCCTGCCCAGGTGAGC--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           203487 525 +    515838 caggaaactaatgcaGACATGAAAAAGCACCTGATC-TTTTTTAGGGCTAAAAGGGAGAAAATCTAACACAGACTCTCATTCAATTCCCTTCCCTCC---CTTCCCTCCTTACCTGTCAGTCTATGAAGCATGTTTTTGACCACTGGGTAATCTTCAGGGAGATCATCCTCCGGATTAGGTAACTTGGGTGCTGGGACTTCAAATCTAGACAGATGAGGG-GCAGGGTCAGCAAATCA----------------GCCCT-------CTGATGCTAATGCCTCCCACACATACCTCACTCGAATCTCTAGAGGAAGAAGGGATGAGGCTGTACCCCCAGAAAACCTGCCTATTGATGGGAA------CAAAGATGTGGGCCCAGTAGGAGCATGATGGCTATGGTAGCTGCTAGTGAAAAGGAAAGAACAG-TAAAAGCAGAACTCACCGTCTCCACGTCTTCCTCATATCCTAGGATGGGCAGAAACAAACATG-GATGTGAGCTCTGGGCTTCATTCTGT-GGGCATCCTTCCCTATCTTCCCCCCTCCCCAGGTGAGCTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     835244 524 -   1771730 caggaaactaatgcaGACATCAAAAAGGACCCGATC-TTTTTTAGGGCTATCAGGGAGAAAATCTAACGCAGACTCTCATTCAATTCccctccctcc---cttccctccttacctGTCAGTCTATGAAGCATGTTTTTGACCACTGGATAATCTTCAGGGAGATCATCCTCTGGATTAGGTGACTTGGGTGCTGGGACTTCCAGTCTAGACAGATGAGGG-GAAGGGTCAGCAAATCA----------------GCCCT-------CTGATGCTAATGCCCC-CACACATACCTCACTCGAATCTCTGGAGGAAGAAGGGATGAGGCTGTACCCCCAGAAAACCTGCCTGTTAATGGGAA------CAAAAATGTGGGCCCAGTGGAAACATGATGGCTATGGTAGCTGCTAGTGAAAAGGAAAGAACAG-TAAAAGCAGAACTCACCGTCTCCACGTCTTCCTCATATCCTAGGATGGGCAGAAACAAACATG-GATGTGAGCTCTGGGCCTCATTCTGT-GGGCATCCTTTCCTATCTTCCCCCCTCCCCAGGTGAGCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     321050 525 -    383796 caggaaactaatgcaGACATTAAAAAGGACCTGATC-TTTTTTAGGGCTAAAAGGGAGAAAATCCAACGCAGACTCTCATTCAAttcccttccctcc---cttccctccttacctGTCAGTCTATGAAGCATGTTTTTGACCACTGGGTAATCTTCAGGGAGATCAGCCTCCGGATTATGTGACTTGGGTGTTGGGACTTCAAATCTAATCAGATGAGGG-GAAGGGTCAGCAAATCA----------------GCCCT-------CTGATGCTAATGCCCCCCACACATACCTCACTCGAATCTCTATAGGAAGAAGGGGTGAGGCTATACCCCCAGAAAACCTGCCTATTAATGGGAA------CAAAGATGTGGGCCCAGTGGGAACATGATGGCTATGGTAGCTGCTAGTGAAAAGCAAAGAACAG-TAAAAGCAGAACTCACCGTCTCCACGTCTTCCTCATATCCTAGGATGGGCAGAAACAAACATG-AATGTGAGCTCTGGGCTTCATTCTGT-GGGCATCCTTCCCTATCTTCCCGCCTCCGCAGGTGAGCTC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               300050 525 + 123392446 TAGGAAACTCATACAGACATCAAAAAGGACTTGATCATTTTTGAGAGCTAAAAGGGAGAAAGCCTAAGACAGACTCTGCTTCAGT-----TCCCTCCCTTCTGCCCGCCTTACCGGTCAGTCTGTGAAGCATGTTCTTGACCACTGGGTAATCTTCAGGGAGATCATCCTCTGAGTTAGATGACTTGGGTGTTGGGACATCAAATCTGGAAAGATGAGGG-GAAGGGTCAGGAAATCAGTAGACAACCCTTT--ACCCT-------CTGATGCTAATGCCCC-CACCCCTACCCCACTCACATCTCTGGAAGAGGAAAGGTTGAGGCCACG-CCCCAGAAAACCTGCCTGTGATTGGGGA------CAAAGATGTGGCCT--GTGGGAGAGTGATGGCTATGGCCTCTGGCAGTGA----AAAGGAACAG-TAAAAGTGGAACTCACCGTCTCCATGTCTTCCTTATATCCTG-GTTGGGCAAAAA-AAACATG-GATATGAGCTCTGGGCTTCATAGTGTGGGGTGCCCTCCCCCATCT----GCTTCCTCAGGTGAGCTC
i micMur3.chr6             I 340 I 102
s proCoq1.NW_012149775v1     104194 526 -   1411461 taggaaactaatacaGACATGAAAAAGGACTTGATCATTTTTGAGAACTAACAGGGAGAAAGCCTAACACAGACTCTGATTCAGT-----TCCCTCCCCTCTGCCCTCCTTACCGGTCAGTCTGTGAAGCATGTTCTTGACCACTGGGAAATCTTCAGGGAGATCATCCTCTGAGTTAGATGACTTGGGTGTTGGGACGTCAAATCTGGAAAGATGAGGG-GAATGGTCAGGAAATCAGTAGATAATCCTCT--ACCTT-------CTGA-GCTAATGCCCC-CACCTCTACCCCACTCACATCTCTGGAAGACGAAGGGGTGAGGCCACA-CCCCAGAAAACCTGCCTGTGACTGGGGA------CAAAGACATGGCCCCAGTGGGAAAGTGATGGCTATGGCAGCTGGCAGTGA----AAAGGAACAG-TAAAAGTGGAACTCACCGTCTCCATGTCTTCCTTATATCCTG-GTTGGGCAGAAA-AAACATG-GATATGAGCTCTGGGCTTCCTACTGTGGGGCACCCTCCCCCAGCC----ACCTCCTCAGGTGAGCTC
i proCoq1.NW_012149775v1   I 3 C 0
s otoGar3.GL873550           251755 503 +  18854210 -----------------CTTTGGAAAGGACTTGATCATTTTCGAAACCTAAAAGGAAGAATACCTAACACAGATTCTGATTCAGT-----TCCCTCCCTTCTTCTCTCCTTACCTGTCAGTCTATGAAGCATGTTTTTGACCACTGGGTAATCTTCAGGAAGACCATCCTCTGAGTTAGATGATTTGGGTGTTGGGACATCAAATCTAGAGAGA-----------AATCAGTAGAT-AGTAGATAGCCCTCTGCGCTCT-------CTGATGCTTATGTCCC-CACCACTACCCCACTCACATCTCTGAAGCAGGAAGCACTAAGGCCACA-CCCTAGAAAACCTGCCTGTGACTGGGAA------CAAATATGGGGCCCCAGTGGGAAAGTGATGGCTATAGTAGCTGGCAATGAAAAGAAAGGAATAG-TAACAATAGAACTCACCGCCTCCATGTCTTCCTTATATCCTGAGTTGGGCAGAAA-AAAAACATGATATGAGCTCTCAGCTTCATACTGTGGGATGCCTTCACCCA--------CCTTCTCAGGTGAGCTC
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58041676 496 -  94987271 taggaagtcaaaacTGATACCAAAGTGGACTTGAGCATTTTCTAGAGCGAAGAGGGAGCAAACAGAGCATAGCTTATGATCCG------CTCCCTCCCCTCTTC-------ACCTGTCAGCCTGTGAAGCATGTTTTTGACCACGGGGTAATCTTCAGGGAGATCCTCCTCTGAGTTAGATGGCTTGGGTGCTGGGACATCGAATCTGGAGAGACGAAGG-AAGTTATTGGCATCCCT----------------GTCTTTTTGATGCTGCTTCTGATGATCC-------TAACCCACTCACTTGTC----ACAGAAACAGGTGAGGCTACA-CTCTAGAAAGCCCGTTGCTAAGTGGAGG------TAAAGAGAGGGGTCTGGAGGGAAGGTCATGGCTATGGCTGTAGGTAGTGGGAAGGAAGAAACAAACAAAAATGGAACTCACCGTCTCCATGTCTTCCTCATATCCTGGTACGGGCAGAAGAAAACATA-GGTGTGAG--------TTCACACTGTGGGACATCTTCCCCT---------CCGCCTCAGGTGAGCTC
i mm10.chr17               C 0 I 4
s canFam3.chr35            26294690 513 +  26524999 taggacgccaacacGGACATGAAAGAAGTCCTGAATGTGTTAGAGGGAGAAGAGAGAGCACACCTGAACTAGACTCTCACTCAGC-----TGGGCCCCGCCTGCCCTCCTTACCTGCCAGTCTGTGGAGCATGTTTTTGACCACTGGATAGTCTTCGGGGAGGTCATCATCTGAGTTAGATGACTTGGGTGTTGGGACATCAAATCTGGACAGATGAGGGAGAAGGTTCAGGAAATCAGGAGAC----------ACCGT-------CCGC-CCTGATGCCCA--------------CCCACATCTCTGGAGCAGGAAGGGGTGAGTTCCCA--TCCAGAAGACCTGTCCGTGAATGTGAATGTGGGCAGAGATGTGAGCCCA-TGGGGAGGGGATGGATGCAGTCACTGGTAGTGGAAAGGAAGGGACAG--TAAAATGGAACTCACCTCCTCCACGTCTTCCTTACATCCTGGGATGGGCAGAAGAAAACATG-GATGTGAGCCCTGAGCATGGTGCTGGGGGGCTCTCCCCTC------TTCCCTTTCCTTGGGGAGCTG
i canFam3.chr35            C 0 C 0

a score=1354342.000000
s hg38.chr6_GL000254v2_alt  1417658 118 +   4827813 TGTCTGAGTTAGCAGTGTCCCTCCTCACCTTTCAGAGTGATCTCACCTCTTTACACA--------------CTGTGCTCC-TTTCCCTCTCATTCTCCTCCTTCACCTTTCATGATCCCTCCTTCCTCTCACC
s panTro5.chr6             30290925 118 + 175400573 TGTCTGAGTTAGCAGTGTCCCTCCTCACCTTTCAGAGTGATCTCACCTCGTTACACC--------------CTGTGCTCC-TTTCCCTCTCATTCTCCTCCTTCACCTTTCATGATCCCTCCTTCCTCTCACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30521376 118 + 173848474 TGTCTGAGTTAGCAGTGTCCCTCCTCACCTTTCAGAGTGATCTCACCTCGTTACACC--------------CTGTGCTCC-TTTCCCTCTCATTCTCCTCCTTCACCTTTCATGATCCCTCCTTCCTCTCACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     228482 118 +   2037526 TGTCTGAGTTAGCAGTGTCCCTCCTCACCTTTCAGAGTGATCTCACCTCTTTACACC--------------CTGTGCTCC-TTTCCCTCTCATTCTCCTCCTTCACCTTTCATGATCCCTCCTTCCTCTCACC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74901533 118 + 122973662 TGTCTGAGTTGGCAGTGTCCCTCCTCACCTCTCAGAGTGATCTCACCTCTTTACCCC--------------CTGTGCTCC-TTTTCCTCTCATTCTCCTCCTTCACCTTTCATGATCCCTCCTTCCTCTCACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30775355 118 + 172585720 TGTCTGAGTTGGCAGTGTCCCTCCTCACCTTTCAGAGTGATCTCACCTCCTTACCCC--------------CTGTGCTCC-TTTTCCTCTCATTCTCCTCCTTCATCTTTCATGATCCCTTCTTCCTCTCACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30070492 118 - 170955103 TGTCTGAGTTGGCAGTGTCCCTCCTCACCTTTCAGAGTGATCTCACCTCCTTACCCC--------------CTGTGCTCC-TTTTCCTCTCATTCTCCTCCTTCATCTTTCATGATCCCTTCTTCCTCTCACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     319802 118 +   1495729 TGTCTGAGTTGGCAGTGTCCCTCCTCACCTTTCAGAGTGATCTCACCTCCTTACCCC--------------CTGTGCTCC-TTTTCCTCTCATTCTCCTCCTTCATCTTTCATGATCCCTTCTTCCTCTCACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     417684 111 -    863181 TGTCTG-------AGTGTCCCTCCTCACCTTTCAGAGTGATCTCACCTCCTTACCCC--------------CTGTGCTCC-TTTTCCTCTCATTCTCCTCCTTCACCTTTCATGATCCCTTCTTCCTCTCACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29569774 111 -  71996105 TGTCTG-------AGTGTCCCTCCTCACCTTTCAGAGTGATCTCACCTCCTTACCCC--------------CTGTGCTCC-TTTTCCTCTCATTCTCCTCCTTCACCTTTCATGATTCCTTCTTCCTCTCACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     255632 111 -    735854 TGTCTG-------AGTGTCCCTCCTCACCTTTCAGAGTGATCTCACCTCCTTACCCC--------------CTGTGCTCC-TTTTCCTCTCATTCTCCTCCTTCACCTTTCATGATCCCTTCTTCCTCTCACC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     207852 118 -   1829203 TGTCTGAGTTGGCAGTGTCCCTCCTCACCTTTCAGAGTGATCTCACCTCCTTACCCC--------------CTGTGCTCC-TTTTCCTCTCATTCTCCTCCTTCACCTTTCATGATCCCTTCTTCCTCTCACC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30380334 116 + 171630274 --TCTGAGTTGGCAGCGTCCCACCTTACCTTTCAGGCTGATCTCGCCTCCTTACCCC--------------CTGTGCTCC-TTTACCTCTCATTCTCCTCCTTCACCTTTCATGATCCCTCCTTCCTCTCACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           204012 118 +    515838 TGTCTGAGCTGGCAGTGTCCCTCCTTACCTTTCAGACTGATCTCGCCTCCTTACCCA--------------CTGTGCCCC-TTTACCTCTCATTCTCCTCCTTCACCTTTCATGATCCCTCCTTCCTCTCACC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     835768 118 -   1771730 TGTCTGAGTTGGCAGTGTCCCTCCTTACCTTTCAGGCTGATCTCACCTCCTTAGGCT--------------TTGTGTTCC-TTTACCTCTCATTCTCCTCCTTCACCTTTCATGATCCCTCCTTCCTCTCAcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     321575 117 -    383796 TGTCTGAGTTGGCAGTGTCCCTCCTTACCTTTCAGGCTGATCTCGCCTCCTTACCCC--------------CTGTG-TCC-TTTACCTCTCATTCTCCTCCTTCACCTTTCATGATCCCTCCTTCCTCTCACC
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     104720 111 -   1411461 CATCTGAGTTGGTGACATCCCTT-CCCCCTCTCAGAGTGATCTCACTTCCACATCCC--------------CTGTGCTCC-TTTC------ATTCTGTCCCTTCCCCTTTCCCGACCCATCCTTCTTCTCTCT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           252258 116 +  18854210 CTTCCGAGTTCATGATGTCTCGCACCACCTCTCAGCATGATCTCACCTCCACATCCC--------------CTGTGTTCC-TTTCC--CCTCTCATCTACCTTCCCCTTTCATGACCCATCCTTCCTTTCCAG
i otoGar3.GL873550         C 0 I 3
s mm10.chr17               58042176 123 -  94987271 TGCTTGA----------TACCTTCCCACCTTTTAAAACCATCTCCCCACCCCACCCCAAACACCCTGCCCGCTCTGCTCCATTTTTCTCTTCAGTTCTCCCTTCTTCTTTCATGTCCTTTACTTCTGCCTACT
i mm10.chr17               I 4 C 0
s canFam3.chr35            26295203  63 +  26524999 -------GTTCTCAGTGGC------------TAAGA------------------TCC--------------CTGGCATCT-CTGGCCTCT--TTGTCCCCCT------------GTGCCTCCTTCCTCT----
i canFam3.chr35            C 0 C 0
e micMur3.chr6               300575 102 + 123392446 I

a score=1474969.000000
s hg38.chr6_GL000254v2_alt  1417776 109 +   4827813 CC---ATCACTTTTCCCTCATCCTCCTAACTCCATCCCCACTGTCCTC--CCCCTTTCCACTCCCCAAGGGTTCTCAATTCTCTTTTCCCAGGCTCGTCCGTGACTGTTTCTTG
s panTro5.chr6             30291043 109 + 175400573 CC---ATCACTTTTCCCTCATCCTCCTAACTCCATCCCCACTGTCCTC--CCCCTTTCCACTCCCCAAGGGTTCTCAATTCTCTTTTCCCAGGCTCGTCCATGACTGTTTCTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30521494 109 + 173848474 CC---ATCACTTTTCCCTCATCCTCCTAACTCCATCCCCACTGTCCTC--CCCCTTTCCACTCCCCAAGAGTTCTCAATTCTTTTTTCCCAGGCTCGTCCATGACTGTTTCTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     228600 108 +   2037526 CC---ATCACTTTTCCCTCATCCTCCTAACCCCATCCCCACTGTCCTC--CCCCTTTCCACTCCCC-AGGGTTCTCAATTCTCTTTTCCCAGGCTCGTCCATGACTGTTTCTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74901651 109 + 122973662 CC---ATCACTTTTCCCTCATCCTCCTAACTCCATCCCCACTGTCCTC--CCCCTTTCCACTCTCCAAGGGTTCTCAATTCTCTTTTCCCAGGCTCGTCCATGACTGTTTCTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30775473 109 + 172585720 CC---ATCACTTTTCCCTCATCCTCCTAGCTCCATCTCCACTGTCCTC--CCCCTTTCCACTCCCCAAAGGTTCTCAATTCTCTGTTCCCAGGCTTGTCCATGACTGTTTCTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30070610 109 - 170955103 CC---ATCACTTTTCCCTCATCCTCCTAGCTCCATCTCCACTGTCCTC--CCCCTTTCCACTCCCCAAAGGTTCTCAATTCTCTGTTCCCAGGCTTGTCCATGACTGTTTCTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     319920 109 +   1495729 CC---ATCACTTTTCCCTCATCCTCCTAGCTCCATCTCCACTGTCCTC--CCCCTTTCCACTCCCCAAAGGTTCTCAATTCTCTGTTCCCAGGCTTGTCCATGACTGTTTCTTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     417795 109 -    863181 CC---ATCACTTTTCCCTCATCCTCCTAACTCCATCTCCACTGTCCTC--CCCCTTTCCACTCCCCAAAGGTTCTCAATTCTCTGTTCCCAGGCTTGTCCATGACTGTTTCTTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29569885 109 -  71996105 CC---ATCACTTTTCCCTCATCCTCCTAACTCCATCTCCACTGTCCTC--CCCCTTTCCACTCCCCAAAGGTTCTCAATTCTCTGTTCCCAGGCTTGTCCATGACTGTTTCTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     255743 109 -    735854 CC---ATCACTTTTCCCTCATCCTCCTAACTCCATCTCCACTGTCCTC--CCCCTTTCCACTCCCCAAAGGTTCTCAATTCTCTGTTCCCAGGCTTGTCCATGACTGTTTCTTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     207970 109 -   1829203 CC---ATCACTTTTCCCTCATCCTCCTAACTCCATCTCCACTGTCCTG--CCCCTTTCCACTCCCCAGATGTTCTCAATTCTCTGTTCCCAGGCTTGTCCATGACTGTTTCTTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30380450 109 + 171630274 CT---GTAACTTTTTCCTCATCCTCCTAACTCCATCCCCACTGTCCTC--CCCATCTCCACTCCCCAAGCGTTCTCAATTTTCCTTTCCCAGCCTCATCCATGCCTGTTTCTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           204130 109 +    515838 CC---ATCACTTTTCCCTCATCCTCCTAACTCCATCCCCACCGTCGTC--CCCGTCTCCACTCCCCAAGGGTTCTCAGTTCTCCTTTCCCAGCCTCATCCATGCCTGTTTCTTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     835886 109 -   1771730 cc---atcacttttccctcatcctcctaactccatccccactgtcttc--cccatctccactccccaAGAGTTCTCAGTTCTCCTTTCCCAGCCTCATCCATGCCTGTTTCTTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     321692 109 -    383796 CC---ATCACTTTTCACTCGTCCTCCTAACTCCATCCCCACTGTCCTC--CCCATCTCCACTCCCCAAGAGTTCTCAATTCTCCTTTCCCAGCCTCATCCTTGCCTGTTTCTTG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               300677 107 + 123392446 cc---accactttttcctcatcctcctaacttcacccccactgtcctc--cccc--tccATTCCCTAAGGGTTCTCAATTCCCCTTCCCCAGCCTCATCCATGCCTGTTTCTTG
i micMur3.chr6             I 102 I 8
s proCoq1.NW_012149775v1     104831 107 -   1411461 CC---ATCACTTTTTCCTCATCCTCCTAACTTCACCCCCACTGTCCTC--CCCC--TCCATTCCCCAAGCGTTCTCAATTCTCCTTCCCCAGCCTCATCCATGCCTGTTTCTTG
i proCoq1.NW_012149775v1   C 0 I 5
s otoGar3.GL873550           252377  96 +  18854210 -------TACTTTTTCCTCATCCTCTTAACTTCACCTCCACTACCATC-TTCTC--TCCATTTCCTAGGGGTTCTCAATTTCCCTTCCCCAACCTCACCCATGCCT--------
i otoGar3.GL873550         I 3 C 0
s mm10.chr17               58042299  91 -  94987271 CCAAAATCACTTTCTCCTCAGGTTCCTAGCTTCATCCAGACTGTTATA--TGCC-----------------TTCTCCATCCT---TCCACAGCCTCA-ACACAACTACTTCTTA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26295266  79 +  26524999 CC---ATCATTGT------------------------CCACTGCCTTTGTTTCCAGCCCATTTCCCAGGG--------TTCTCCTTCCCCAGCCTTCTCCAGGACTTGTTTCTG
i canFam3.chr35            C 0 C 0

a score=101316.000000
s hg38.chr6_GL000254v2_alt  1417885 11 +   4827813 ---------TCCTCAGAGCC
s panTro5.chr6             30291152 11 + 175400573 ---------TCCTCAGAGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30521603 11 + 173848474 ---------TCCTCAGAGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     228708 11 +   2037526 ---------TCCTCAGAGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74901760 11 + 122973662 ---------TCCTCAGAGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30775582 11 + 172585720 ---------TCCCCAGAGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30070719 11 - 170955103 ---------TCCCCAGAGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     320029 11 +   1495729 ---------TCCCCAGAGCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     417904 11 -    863181 ---------TCCCCAGAGCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29569994 11 -  71996105 ---------TCCCCAGAGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     255852 11 -    735854 ---------TCCCCAGAGCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     208079 11 -   1829203 ---------TCCCCAGAGCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30380559 11 + 171630274 ---------TCCCCAGAGCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           204239 11 +    515838 ---------TCCCCAGAGCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     835995 11 -   1771730 ---------TCCCCAGAGCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     321801 11 -    383796 ---------TCCTCAGAGCC
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     104943  3 -   1411461 ---------TTC--------
i proCoq1.NW_012149775v1   I 5 C 0
s otoGar3.GL873550           252473 11 +  18854210 ---------TTCGCAGAGTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58042390  2 -  94987271 ----------CC--------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26295345 20 +  26524999 CCCTCTTACCTTCCGGAGTT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               300784  8 + 123392446 I

a score=811250.000000
s hg38.chr6_GL000254v2_alt  1417896 63 +   4827813 CTTGCCTTCCT-TGCTGCCT-CCTCAGTCCCATTCTCTGTCTCTTTCAGCGGCCCC-------ATCCTTATC
s panTro5.chr6             30291163 63 + 175400573 CTTGCCTTCCT-TGCTGCCT-CCTCAGTCCCATTCTCTGTCTCTTTCAGCGACCCC-------ATCCTTATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30521614 63 + 173848474 CTTGCCTTCCT-TGCTGCCT-CCTCAGTCCCATTCTCTGTCTCTTTCAGCGACCCC-------ATCCTTATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     228719 63 +   2037526 CTTGCCTTCCT-TGCTGCCT-CCTCAGTCCCATTCTCTGTCTCTTTCAGCGGCCCC-------ATCCTTATC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74901771 63 + 122973662 CTTGCCTTCCT-TGCTGCCT-CCTCAGTCCCATTCTCTGTCTCTTTCAGCGGCCCC-------ATTCTTATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30775593 62 + 172585720 CTTGCCTTCCTCTGCTGCCT-CCTCAGTCCCAT--TCTGTCTCTTTCAGTGGCCCC-------ATCCTTATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30070730 62 - 170955103 CTTGCCTTCCTCTGCTGCCT-CCTCAGTCCCAT--TCTGTCTCTTTCAGTGGCCCC-------ATCCTTATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     320040 62 +   1495729 CTTGCCTTCCTCTGCTGCCT-CCTCAGTCCCAT--TCTGTCTCTTTCAGTGGCCCC-------ATCCTTATC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     417915 62 -    863181 CTTGCCTTCCTCTGCTGCCT-CCTCAGCCCCAT--TCTGTCTCTTTCAGTGGCCCC-------ATCCTTATC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29570005 62 -  71996105 CTTGCCTTCCTCTGCTGCCT-CCTCAGTCCCAT--TCTGTCTCTTTCAGTGGCCCC-------ATCCTTATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     255863 62 -    735854 CTTGCCTTCCTCTGCTGCCT-CCTCAGTCCCAT--TCTGTCTCTTTCAGTGGCCCC-------ATCCTTATC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     208090 64 -   1829203 CTTGCCTTACTCTGCTGCCC-CCTTAGTCCCATTCTCTGTCTCTTTCAGTGGCCCC-------ATCCTTATC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30380570 57 + 171630274 CTTGTCTTCCTCTGCTGCC--------TCCCATTCTCTGTCTCTTTCAGTGCCTCT-------ATCCTTATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           204250 64 +    515838 CTTGCCTTCCTCTGCTGCCT-CCTCAGTCCCATTCTTTGTCTCTTTCAGTGCCTCC-------ATCCTTATC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     836006 63 -   1771730 CTTGCCTTCCTCTGCTGCCT-CCTCAGTCCCA-TCTCTGTCTCTTTCAGTGCCTCC-------ATCCTTATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     321812 64 -    383796 CTTGCCTTCCTCTGCTGCCT-CCTCAGTCCCATTCTCTGTCTCTTTCAGTGCCTCC-------ATCCTTATC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               300792 64 + 123392446 CTTGCCTCCCTCTGCTGCCT-TCTCAGCCCCATTCTCTGTGTCTTTCAATGGCCCC-------ATCCTTATC
i micMur3.chr6             I 8 I 56
s proCoq1.NW_012149775v1     104946 64 -   1411461 CTTGCCTCCCTCTGCTGCCT-CCTCAGCCCCATTCTCTGTGTCTTTCAGTGACCCC-------ATCCTTATC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           252484 60 +  18854210 CTTGCCTTCCTCTGCTGCTT-CCTCAGCCC-----------TTCTTCAGGGACCCCACCCTTTATCCTTACC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58042392 52 -  94987271 -------TCTTGTTTAATCT-TCCCAGGCCCACGCTC----TCTTTTAGTATGCTC--------TCCTTCTT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26295365 45 +  26524999 CTCACCTTTCCCTGCTGCCTCCCCCAGCCTCAT--------------------TCT-------ATCTTTATA
i canFam3.chr35            C 0 C 0

a score=664238.000000
s hg38.chr6_GL000254v2_alt  1417959 64 +   4827813 TACCTTCCCCAG--TGCATCCCAGAAAAACATCTGTCCCTTC---------CTCCCTCCATCACACAGACCAAAC
s panTro5.chr6             30291226 64 + 175400573 TACCTTCCCCAG--TGCATCCCAGAAAAACATCTGTCCCTTC---------CTCCCTCCATCACACAGACCAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30521677 64 + 173848474 TACCTTCCCCAG--TGCATCCCAGAAAAACATCTGTCCCTTC---------CTCCCTCCATCACACAGACCAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     228782 64 +   2037526 TACCTTCCCCAG--TGCATCCCAGAAAAACATCTGTCCCTTC---------CTCCCTCCATCACACAGACCAAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74901834 60 + 122973662 CACCTTCCCCAA--TGCATCCCAGAAAAACATCTGTCCCTT-------------CCTCCATCACACAGACCAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30775655 64 + 172585720 CATCGTTCCCAG--TGCATCCCAGAAAACCATCTGTCCCTTC---------TGCCGTCCATCACACAGACCGAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30070792 64 - 170955103 CATCGTTCCCAG--TGCATCCCAGAAAACCATCTGTCCCTTC---------TGCCGTCCATCACACAGACCGAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     320102 64 +   1495729 CATCGTTCCCAG--TGCATCCCAGAAAACCATCTGTCCCTTC---------TGCCGTCCATCACACAGACCGAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     417977 64 -    863181 CATCGTTCCCAG--TGCATCCCAGAAAACCATCTGTCCCTTC---------CGCCCTCCATCACACAGACCGAAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29570067 64 -  71996105 CATCTTTCCCAG--TGCATCCCAGAAAACCATCTGTCCCTTC---------CACCCTCCATCACACAGACCAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     255925 64 -    735854 CATCGTTCCCAG--TGCATCCCAGAAAACCATCTGTCCCTTC---------TGCCGTCCATCACACAGACCGAAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     208154 64 -   1829203 CATCTTTCCCAG--TGCATCCCAGAAAAACATCTGTCCCTTC---------CGCCCTCCATCACACAGACCAAAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30380627 64 + 171630274 TGTCTTCCCCAG--TGCATCCCAGAAAAACATCTGTCCCTTC---------CACCCTCCATCACACAGACCAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           204314 64 +    515838 TGTCTTCCCCAG--TGCGTCCCAGAAAAACATCTGTCCCTTC---------CACCCTCCGTCACACAGACCAAAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     836069 64 -   1771730 TGTCTTCCCCAT--TGCATCCCAGAAAAACATCTGTCCCTTC---------CACCCTCCGTCACACAGACAAAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     321876 64 -    383796 TGTCTTCCCCAG--TGCATCCCAGAAAAACATCTGTCCCTTC---------CACCCTCCATCACACAGACCAAAT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     105010 60 -   1411461 -ACCTTCCTGAG--TGTCTCCCAGACAAA-GTCTGTCCCC-----------CCACCCCCATCACACAGACCAAAC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           252544 73 +  18854210 CTCATTCTTGAG--TGTAGCCCAGACAAATGTCTGTCCTCTTTCACATACACACCCCCCAACACACAAACCAAAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58042444 54 -  94987271 --TAGTTACCAGCATGTCTTCCAGATATATGTCCACCCCGTC--------------ACCACAAAAGGGAC-----
i mm10.chr17               C 0 C 0
s canFam3.chr35            26295410 34 +  26524999 TACCTTTCTGAG-------------------ATTGTCCCT-----------CACCCT---------AGACCAA--
i canFam3.chr35            C 0 C 0
e micMur3.chr6               300856 56 + 123392446 I

a score=3439185.000000
s hg38.chr6_GL000254v2_alt  1418023 217 +   4827813 ACACACCCAGAGCCCTCGGGCTAAGAGTTGGTATATAAAAGCCTTACAATAAAGCTGCTTCCCCTCTTGCAATAAAAGCCCAGTGGCATTTATTGGGCCCTTTGCT----TTGTG--TCTCTGGACCCTGGCCAGGGAGGCAGCTAGACTTGAATGTGTCCCAAAAGGCCCAGCAGA-TCCACAGAG-TACTATGGGAGCCAGGAGAGGGCACTGGATGCTCCCC
s panTro5.chr6             30291290 217 + 175400573 ACACACCCAGAGCCCTCGGGCTAAGAGTTGGTATATAAAAGCCTTACAATAAAGCTGCTTCCCCTCTTGCAATAAAAGCCCAGTGGCATTTATTGGGCCCTTTGCT----TTGTG--TCTCTGGACCCTGGCCAGGGAGGCAGCTAGACTTGAATGTGTCCCAAAAGGCCCAGCAGA-TCCACGGAG-TACTATGGGAGCCAGGAGAGGGCACTGGATGCTCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30521741 217 + 173848474 ACACACCCAGAGCCCTCGGGCTAAGAGTTGGTATATAAAAGCCTTACAATAAAGCTGCTTCCCCTCTTGCAATAAAAGCCCAGTGGCATTTATTGGGCCCTTTGCT----TTGTG--TCTCTGGACCCTGGCCAGGGAGGCAGCTAGACTTGAATGTGTCCCAAAAGGCCCAGCAGA-TCCACGGAG-TACTATGGGAGCCAGGAGAGGGCACTGGATGCTCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     228846 217 +   2037526 ACACACCCAGAGCCCTCGGGCTAAGAGTTGGTATATAAAAGCCTTACAATAAAGCTGCTTCCCCTCTTGCAATAAAAGCCCAGTGGCATTTATTGGGCCCTTTGCT----TTGTG--TCTCTGGACCCTGGCCAGGGAGGCAGCTAGACTTGAATGTGTCCCAAAAGGCCCAGCAGA-TCCACGGAG-TACTATGGGAGCCAGGAGAGGGCACTGGATGCTCCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74901894 217 + 122973662 ACACACCCAGAGCCCTCGGGCTAAGAGTTGGTATATAAAAGCCTTACAATAAAGCTGCTTCCCCTCTTGCAATAAAAGCCCAGTGGCATTTATTGGGCCCTTTGCT----TTGTG--TCTCTGGACCCTGGCCTGGGAGGCAGCTAGACTTGAATGCGTCCCAAAAGGCCCAGCAGA-TCCACAGAG-TACTATGGGAGCCAGGGGAGGGCACTGTGTGCTCCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30775719 216 + 172585720 ACACACCCAGAGCCCTCGGGCTAAGAGTTGGTATATAAAAGCCTTACAATAAAGCTGCTTCCCCTCTTGCAATAAAAGCCCAGTGGCGTTTATTGGGCCCTTTGCT----TTGTG--TCTCTGGACCCTGGCCAGGGAGGCAGCTAGACTTGAATGTGTCCC-AAAGGCCCAGCAGA-TCCATAGAG-CACTATGGGAGCCAGGAGAGGGCGCTGGATGCTCCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30070856 216 - 170955103 ACACACCCAGAGCCCTCGGGCTAAGAGTTGGTATATAAAAGCCTTACAATAAAGCTGCTTCCCCTCTTGCAATAAAAGCCCAGTGGCGTTTATTGGGCCCTTTGCT----TTGTG--TCTCTGGACCCTGGCCAGGGAGGCAGCTAGACTTGAATGTGTCCC-AAAGGCCCAGCAGA-TCCATAGAG-CACTATGGGAGCCAGGAGAGGGCGCTGGATGCTCCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     320166 216 +   1495729 ACACACCCAGAGCCCTCGGGCTAAGAGTTGGTATATAAAAGCCTTACAATAAAGCTGCTTCCCCTCTTGCAATAAAAGCCCAGTGGCGTTTATTGGGCCCTTTGCT----TTGTG--TCTCTGGACCCTGGCCAGGGAGGCAGCTAGACTTGAATGTGTCCC-AAAGGCCCAGCAGA-TCCATAGAG-CACTATGGGAGCCAGGAGAGGGCGCTGGATGCTCCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     418041 216 -    863181 ACACACCCAGAGCCCTCAGGCTAAGAGTTGGTATATAAAAGCCTTACAATAAAGCTGCTTCCCCTCTTGCAATAAAAGCCCAGTGGCGTTTATTGGGCCCTTTGCT----TTGTG--TCTCTGGACCCTGGCCAGGGAGGCAGCTAGACTTGAATGTGTCCC-AAAGGCCCAGCAGA-TCCATAGAG-CACTATGGGAGCCAGGAGAGGGCGCTGGATGCTCCCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29570131 216 -  71996105 ACACACCCAGAGCCCTCGGGCTAAGAGTTGGTATATAAAAGCCTTACAATAAAGCTGCTTCCCCTCTTGCAATAAAAGCCCAGTGGCGTTTATTGGGCCCTTTGCT----TTGTG--TCTCTGGACCCTGGCCAGGGAGGCAGCTAGACTTGAATGTGTCCC-AAAGGCCCAGCAGA-TCCATAGAG-CACTATGGGAGCCAGGAGAGGGCGCTGGATGCTCCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     255989 216 -    735854 ACACACCCAGAGCCCTCGGGCTAAGAGTTGGTATATAAAAGCCTTACAATAAAGCTGCTTCCCCTCTTGCAATAAAAACCCAGTGGCGTTTATTGGGCCCTTTGCT----TTGTG--TCTCTGGACCCTGGCCAGGGAGGCAGCTAGACTTGAATGTGTCCC-AAAGGCCCAGCAGA-TCCATAGAG-CACTATGGGAGCCAGGAGAGGGCGCTGGATGCTCCCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     208218 216 -   1829203 ACACACCCAGAGCCCTCGGGCTAAGAGTTGGTATATAAAAGCCTTACAATAAAGCTGCTTCCCCTCTTGCAATAAAAGCCCAGTGGCATTTATTGGGCCCTTTGCT----TTGTG--TCTCTGGACCCCGGCCAGGGAGGCAGCTAGACTTGAATGTGTCCC-AAAGGCCCAGCAGA-TCCATAGAG-CACTATGGGAGCCAGGAGAGGGCGCTGGATGCTCCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30380691 217 + 171630274 ACACACCCAGAGCCCTTGGGCTAAGAGTTGGTATATAAAAGCCTTACAATAAAGCTGTTTCCCCTCTTACAGTAAAAGCCCCATGGCATTTATTGGGCCCTTTGCA----TTGTG--TCTCTGGACGCTGGCCAGGGAGGCAGCTGGGCTTGAGTGTGTCCCTAAAAGCCCAGCAGA-TCCGCAGAG-TACTATGGGAGCCAGGAGAGGGCACTGGATGCTCCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           204378 217 +    515838 ACACACCCAGAGTCCTTGGGCTAAGAGTTGGTATATAAAAGCCTTACAATAAAGCTGCTTCTCCTCTTGCAGTAAAAGCCCAGTGGCATTTATTGGGCCCTTTGCT----TTGTG--TCTCTGGACCGCGGCCAGGGAGGCAGCTGGGCTTGAGTGTGTCCCTAAAAGCCCAGCAGA-TCTGCAGAG-TACTATGGGAGCCAGGAGAGGGCGCTGGATGCTCCCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     836133 217 -   1771730 ACACACCCAGAGTCCTTGGGCTAAGAGTTGGTATATAAAAGCCTTACAATAAAGCTGCTTCCCCTCTTGCAGTAAAAGCCCAGTGACATTTATTGGGCCCTTTCCT----TTGTG--TCTCTGGACCCTGGCCAGGGAGGCAGCTGGGCTTGAGTGTGTCCCTAAAAGCCCAGCAGA-TCTGCAGAG-TACTATGGGAGCCAGGAGAGGGCGCTGGATGCTCCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     321940 215 -    383796 ACACACCCAGAGCCCTTGGGCTAAGAATTGGTATATAAAAGCCTTACAATAAAGCTGCTTCCCCTCTTGCAGTAAAAGCCCAGTGGCATTTATTGGGCCCTTTGCT----TTGTG--TCTCTGGACCCTGGCCAGGGAGACAGCTGGGCTTGA--GTGTCTCTAAAAGCCCAGCAGA-TCCGCAGAG-TACTATGGGAACCAGGAGAGGGCGCTGGATGCTCCCC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               300912 215 + 123392446 ACACAGCCGGGGCCCTTGGGCTAAGAGTTGGCATATAAAAGCCTTACAATAAAGCTGCTTCCTCTCTTGCCATAAAAGCCCGGTGGCGTTTATTGGGCCTTTTGTT----TTGTG--TATCT--ACCCAGGCCAGGGAGGCAGCTGGTCTTGGATGTGTCCCAAGAGGCCCGGCAGA-CCCGCAGTG-TGCCATGGGACCCAGGAGAGGGCGCTAGATGCTCCCC
i micMur3.chr6             I 56 C 0
s proCoq1.NW_012149775v1     105070 215 -   1411461 ACACACCCGGAGCCCTTGGGCTAAGAGTTGGCATATAAAAGCCTTACAATAAAGCTGCTTCCCCTCTTGCCATAAAAGCCTGGTGGCTTTTATTGGGCCTTTTGTT----TTGTG--TCTCT--ACCCAGGCCAGGGAGGCAGCTGGGCTTGGATGTGTCCCAAGAAGCGCAACAGA-CCCGCAGTG-TGCCATGGGACCCAGGAGAGGGCGCTAGATGTTCCCC
i proCoq1.NW_012149775v1   C 0 I 112
s otoGar3.GL873550           252617 218 +  18854210 GCACACCCAGAGCCTTTGGACAAAGAGTTAGTATATAAAAGCCTTACAATAAAACCGCTTCCCCTCTTGCCGTAAAAGCCTGGTGGCGTTTATAGGGCTCTTTGCT----TTATATCTCTCT--AGCCAGGCCATTGAGGCAGCTGGACTCGCGTGTGTCCCAAGAGGTGCAACAAA-CCCGCGGGGATGCCACAGAAGCCAGGAGAGGGCGCTCGATGGTCCCC
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58042498 215 -  94987271 ACACACCCATATTCCTTGAGCTAAGAGTTGTTATATAAAAGCCTAACAATAAAGCTGCTCTCCTTTTTGTCTTAAAAGCTCAGTGGCGTTTATTGGGCTCTTTGGTTTTATTATG--TCTCTGTACCCT-------CAGGCCCCTGATCTCAGAAGTGTCCTAAGAGACCCTACAGATTTTGTAGGG-AGCCATGGAAGCCTGAAGAGGGCGCTAGATTCTCTCA
i mm10.chr17               C 0 I 3
s canFam3.chr35            26295444 188 +  26524999 --ACACCTGGAGCCCCAGGGCTAAGAGTTGG--TATAAAAGCCTTATAACAAAGCTGCTTCCCTTCTTGCCATAAAAGCCCAGTGGCGTTTATTGGGCCCTTTGCT----TTGTG--TCTGTCTACACTGGCCAAGGAG----TTGGACCTGGATGTGTCCT---------------------GGGG-TGCCATGGGAA-CAAGAATGGATGCTGCCCGCCCCCC
i canFam3.chr35            C 0 C 0

a score=17290.000000
s hg38.chr6_GL000254v2_alt  1418240 1 +   4827813 T
s panTro5.chr6             30291507 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30521958 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     229063 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74902111 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30775935 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30071072 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     320382 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     418257 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29570347 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     256205 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     208434 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30380908 1 + 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           204595 1 +    515838 T
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     836350 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     322155 1 -    383796 T
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               301127 1 + 123392446 T
i micMur3.chr6             C 0 I 109
s otoGar3.GL873550           252836 1 +  18854210 T
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58042716 1 -  94987271 T
i mm10.chr17               I 3 C 0
s canFam3.chr35            26295632 1 +  26524999 T
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012149775v1     105285 112 -   1411461 I

a score=1342937.000000
s hg38.chr6_GL000254v2_alt  1418241 118 +   4827813 CCAAACACTGGGATACCGA---CCCCTCCACTTCACTG--TCTAGTGCTGATGGCTGGAGCAGGCCGATA-TGGTGGAGCGGGGGA---GAGAGAAACAATTTGCATAATTGTGCCAATTACTTTCA
s panTro5.chr6             30291508 118 + 175400573 CCAAACACTGGGATACCGA---CCCCTCCACTTCACTG--TCTAGTGCTGATGGCTGGAGCAGGCCGATA-TGGTGGAGCGGGGGA---GAGAGAAACAATTTGCCTAATTGTGCCAATTACTCTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30521959 118 + 173848474 CCAAACACTGGGATACCGA---CCCCTCCACTTCACTG--TCTAGTGCTGATGGCTGGAGCAGGCCGATA-TGGTGGAGCCGGGGA---GAGAGAAACAATTTGCCTAATTGTGCCAATTACCTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     229064 118 +   2037526 CCAAACAGTGGGATACCGA---CCCCTCCACTTCACTG--TCTAGTGCTGATGGCTGGAGCAGGCCGATA-TGGTGGAGCGGGGGA---GAGAGAAACAATTTGCCTAATTGTGCCAATTACTTTCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74902112 118 + 122973662 CCGAACGCTGGGATCCCGA---CCCCTCCACTTCACTG--TCTAGTGCTGATGGCTGGAGCAGGCCGATG-TGGTGGAGAGGGGGA---GAGAGAAACAATTTGCCTAATTGTGCCAATTACACTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30775936 118 + 172585720 CCAAACACTGGGATCCCGA---CCCCTCCACTTCACTG--TCTAGTGCTGATGTCTGGAGCAGGCCGATA-TGGTGGAGAGAGGGA---GAGAGAAACAATTTGCCTAATTCTGCCAATTACACCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30071073 118 - 170955103 CCAAACACTGGGATCCCGA---CCCCTCCACTTCACTG--TCTAGTGCTGATGTCTGGAGCAGGCCGATA-TGGTGGAGAGAGGGA---GAGAGAAACAATTTGCCTAATTCTGCCAATTACACCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     320383 118 +   1495729 CCAAACACTGGGATCCCGA---CCCCTCCACTTCACTG--TCTAGTGCTGATGTCTGGAGCAGGCCGATA-TGGTGGAGAGAGGGA---GAGAGAAACAATTTGCCTAATTCTGCCAATTACACCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     418258 118 -    863181 CCAAACACTGGGATCCCGA---CCCCTCCACTTCACTG--TCTAGTGCTGATGTCTGGAGCAGGCCGATA-TGGTAGAGAGAGGGA---GAGAGAAACAATTTGCCTAATTCTGCCAATTACACCCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29570348 118 -  71996105 CCAAACACTGGGATCCCGA---CCCCTCCACTTCACTG--TCTAGTGCTGATGTCTGGAGCAGGCCGATA-TGGTGGGGAGAGGGA---GAGAGAAACAATTTGCCTAATTGTGCCAATTACACCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     256206 118 -    735854 CCAAACACTGGGATCCCGA---CCCCTCCACTTCACTG--TCTAGTGCTGATGTCTGGAGCAGGCGGATA-TGGTGGAGAGAGGGA---GAGAGAAACAATTTGCCTAATTCTGCCAATTACACCCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     208435 118 -   1829203 CCAAACACTGGGATCCCGA---CCCCTCCACTTCACTG--TCTAGTGCTGATGTCTGGAGCAGGCCGATA-TGGTGGAGAGAGAGA---GAGAGAAACAATTTGCCTAATTGTGCCAATTACACCCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30380909 118 + 171630274 CCAAATACTGGGATGCCGA---CCCCTCCACTTTACTG--TCCAGTGCTGATGGCTGGAGTACGCTGGTA-AGGTAGAGAGGGGTA---GAGAGAAACAATTTGCCTAATTGTGCCAATTACACTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           204596 116 +    515838 CCGAATGCTGGGATACCGA---CCCCTCCACTTCACTG--TCCAGTGCTGATGGCTGGAGTAGGCCGGTA-AGGTGGAGAGGGG-----GAGAGAAACAATTTGCCTAATTGTGCCAATTACACTCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     836351 117 -   1771730 CCAAACACTGGGATGCAGA---CCCCTCCACTTCACTG--TCCAGTGCTAATGGCTGGAGTAGGCCGGTA-AGGTGGAGGGGGG-A---GAGAGAAACAATTTGCCTAATTGTACTAATTACACTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     322156 118 -    383796 CCAAACACTGGGATGCACA---CCCCTCCACTTCACTG--TCCAGTGCTGATGGCTGGAGTAAACTAGTA-AGGTGGAGAGGGGGA---GAGAGAAACAATTTGCCTAATTGTCCCAGTTACACTCA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           252837 116 +  18854210 -----CCCCCCGCCCCCGA---CTCCTCCACTTCACTG--TCCAGTGCTGAGGGCTGGAGTAGGCCAGTA-TGGTAGTGAGGGGTAGAGGAGAAAGACAATTTACCTAATTATGCCAATTACACCTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58042717  99 -  94987271 CCAAACACTGGGTTTCCTT---CATC-CCTCTTTTCTGATTCCAGAGAGGATGGCTGG-GAAGGCCAGTG-TGGCAG---GAAGAA---GAGAGGA----------------TGGCAATTACACCTA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26295633 118 +  26524999 CCAAATA----AATATCAGGCCCCCCTTCCCATCACTG--TCTCTCAGGTATGACTGGAGCACACCTGCAGTGGTGAAGGGAGGAG---AGGAAAGAGAATTTGCCTAATGATGCCAATTACACCTG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               301128 109 + 123392446 I
e proCoq1.NW_012149775v1     105285 112 -   1411461 I

a score=1576890.000000
s hg38.chr6_GL000254v2_alt  1418359 104 +   4827813 GACTAATTAGGTCTATGAAGACTTC-AAAGGGCAGAAGCAAGACCCAAGACC--AGCTTGGCTGCTGGGAAG-----AAGCCAGTCAGGAGTCCCAGACGCCCAGGGGTCGG
s panTro5.chr6             30291626 104 + 175400573 GACTAATTAGGTCTATGAAGACTTC-AAAGGGCAGAAGCAAGACCCAAGACC--AGCTTGGCTGCTGGGAAG-----AAGCCAGTCAGGAGTCCCAGACGCCCAGGGGTCGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30522077 104 + 173848474 GACCAATTAGGTCTATGAAGACTTC-AAAGGGCAGAAGCAAGACCCAAGACC--AGCTTGGCTGCTGGGAAG-----AAGCCAGTCAGGAGTCCCAGACGCCCAGGGGTCGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     229182 104 +   2037526 GACTAATTAGGTCTATGAAGACTTC-AAAGGGCAGAAGCAAGACCCAAGACC--AGCTTGGCTGCTGGGAAG-----AAGCCAGTCAGGAGTCCCAGACGCCTAGGGGTCGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74902230 100 + 122973662 GACTAATTAGGTCTATGAAGACTTC-AAAGGGCGGAAGCAAGACCCAAGACC--AGCTTGGCTGCTGGGGAG-----AAGCCATTCAGGAGTCCCAGACGCCCGGG----GG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30776054 100 + 172585720 GACTAATTAGGTCTATGAAGACTTC-AAAGGGCAGAAGCAAAACCCAAGACC--AGCTTGGCTGCTGGGGAG-----AAGCCAGTCAGGAGTCCCAGACGCCCGGG----GG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30071191 100 - 170955103 GACTAATTAGGTCTATGAAGACTTC-AAAGGGCAGAAGCAAAACCCAAGACC--AGCTTGGCTGCTGGGGAG-----AAGCCAGTCAGGAGTCCCAGACGCCCGGG----GG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     320501 100 +   1495729 GACTAATTAGGTCTATGAAGACTTC-AAAGGGCAGAAGCAAAACCCAAGACC--AGCTTGGCTGCTGGGGAG-----AAGCCAGTCAGGAGTCCCAGACGCCCGGG----GG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     418376 100 -    863181 GACTAATTAGGTCTATGAAGACTTC-AAAGGGCAGAAGCAAAACCTAAGACC--AGCTTGGCTGCTGGGGAG-----AAGCCAGTCAGGAGTCCCAGACGCCCGGG----GG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29570466 100 -  71996105 GACTAATTAGGTCTATGAAGACTTC-AAAGGGCAGAAGCAACACCCAAGACC--AGCTTGGCTGCTGGGGAG-----AAGCCAGTCAGGAGTCCCAGACCCCCGGG----GG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     256324 100 -    735854 GACTAATTAGGTCTATGAAGACTTC-AAAGGGCAGAAGCAAAACCCAAGACC--AGCTTGGCTGCTGGGGAG-----AAGCCAGTCAGGAGTCCCAGACGCCCGGG----GG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     208553 100 -   1829203 GACTAATTAGGTCTATGAAGACTTC-AAAGGGCAGAAGCAAAACCCAAGACC--AGCTTGGCTGCTGGGGAG-----AAGCCAGTCAGGAGTCCCAGACGCCCGGG----GG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30381027 100 + 171630274 GACTAATTAGGTCTATGAAGACTTC-AAAGGCCAGAAGCAAGACCCAAGACC--AGCTTGGCTGCTGGGGAG-----AAGCCAGTCAGGAATCTCAGACGCCCAGG----TG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           204712 100 +    515838 GACTAATTAGGTCTATGAAGACTTC-AAAGGGCAGAAGCAAGACCCAAGACG--AGCTTGGCTGCTGGGGAG-----AAGCCATTCAGGAATCTCAGACGCCCAGG----GG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     836468 100 -   1771730 GACTAATTAGGTCTATGAAGACTTC-AAAGGGCAGAAGCAAGACCCAAGACC--AGCTTGGCTGCTGGGGAG-----AAGCCAGTCAGTAATCTCGGACGCCCAGG----GG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     322274 102 -    383796 GACTAATTAGGTCTACGAAGACTTC-AAAGGGCAGAAGCAAGACCTAAGACCTAAGCTTGGCTACTGGGGAG-----AAGCCAGCCAGGAATCTCAGACGCCCAGG----GG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               301237 100 + 123392446 GACTAATTAGGTCTGCGAACACTTC-AAAGGGCGGAAGCAAGACCCGAGCCC--GGCTTGGCTGCTGGGGAG-----AAGCAGGTGGGGCGTCCAAGACGCCCGGG----GG
i micMur3.chr6             I 109 C 0
s proCoq1.NW_012149775v1     105397 100 -   1411461 GACTAATTAGATCTGCGAAGACTTC-AAAGGGCGGAAGCAAGACCCGAGCCC--GGCTTGGCTGCTGGGGAG-----AAGCAAGTCGGGCGTCCAAGACACCTGGG----GG
i proCoq1.NW_012149775v1   I 112 I 395
s otoGar3.GL873550           252953 100 +  18854210 TACTAATTAGGTCTATGAAGACTTCAAAAGGGCGGAAGCAAGACCCAAGACC--GGCTTGGCTGCTGGGGAG-----AAGCCAGTT-GGTGTTCCAGACGCCTGGG----GG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58042816  96 -  94987271 GACTAATTAGGTCTGTGAAGCCTTC-AAAGGGCGGAAGCCAGACCCAGGGC---GGGAGGGCTGCTAAGGGGTAAAAAAGCCAGATGGATGGTTTTGAGG------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26295751 100 +  26524999 GACTAATTAGGTCTGTGTAGACTTC-AAAGTGTGGAAGCAAGACTGGAGACT--GGCTAGGCTGCTGGGAAG-----AAGCCAGTGAGAAATCCAGGACGCCTGCG----GG
i canFam3.chr35            C 0 C 0

a score=496727.000000
s hg38.chr6_GL000254v2_alt  1418463 41 +   4827813 TCGGGCAAGGGAAT-GGGCTGGTTAGTGGC----------CAAGGAGCCGGG
s panTro5.chr6             30291730 41 + 175400573 TCGGGCAAGGGAAT-GGGCTGGTTAGTGGC----------CAAGGAGCCGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30522181 41 + 173848474 TCGGGCAAGGGAAT-GGGCTGGTTAGTGGC----------CAAGGAGCCGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     229286 41 +   2037526 TCGGGCAAGGGAAT-GAGCTGGTTAGTGGC----------CAAGGAGCCGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74902330 41 + 122973662 TCGGGCAAGGGAAT-GGGCTGGTTGGTGGC----------CAAGGAGCCGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30776154 41 + 172585720 TCGGGCAAGGTAAT-GGGTTGGTTGGTGGC----------CAAGGAGCCCGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30071291 41 - 170955103 TCGGGCAAGGTAAT-GGGTTGGTTGGTGGC----------CAAGGAGCCCGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     320601 41 +   1495729 TCGGGCAAGGTAAT-GGGTTGGTTGGTGGC----------CAAGGAGCCCGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     418476 41 -    863181 TCGGGCAAGGTAAT-GGGTTGGTTGGTGGC----------CAAGGAGCCCGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29570566 41 -  71996105 TCGGGCAAGGTAAT-GGGTTGGTTGGTGGC----------CAAGGAGCCCGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     256424 41 -    735854 TCGGGCAAGGTAAT-GGGTTGGTTGGTGGC----------CAAGGAGCCCGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     208653 41 -   1829203 TCGGGCAAGGTAAT-GGGTTGGTTGGTGGC----------CAAGGAGCCCGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30381127 41 + 171630274 TCGGGCAAGGAAATGGGGTTGG-TGGTGGC----------CAAGAAGCCGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           204812 42 +    515838 TCGGGCAAGGGAATGGGGTTGGTTGGTGGC----------CAAGAAGCCGGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     836568 42 -   1771730 TCGGGCAAGGGAATGGGGTTGGTTGGTGGC----------CAAGAAGCCGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     322376 42 -    383796 TCGGGCAAGGGAATGGGGTTGGTTGGTGGC----------CAAGAAGCCGGG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               301337 42 + 123392446 GCGGGCAAGGGAATGGAGTTGGTTGGCGGC----------CAAGGAGTCGGG
i micMur3.chr6             C 0 I 484
s otoGar3.GL873550           253053 35 +  18854210 TCGGGTAAGGGAAAGGGGTT-------GGC----------CAAGGAGCCTGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58042912 36 -  94987271 TACTGTAAAGGAATAGGAGTGGTTGATGTC----------TAAGGG------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26295851 52 +  26524999 TCTGGCAAGGGACTGGCGCTGGTGGGTAGCTGGTGGGTGGCGGGGAGTTGGG
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012149775v1     105497 395 -   1411461 I

a score=236561.000000
s hg38.chr6_GL000254v2_alt  1418504 24 +   4827813 --------------GCCCAGGAGAGGCGCGGGGGGTAG
s panTro5.chr6             30291771 24 + 175400573 --------------GCCCAGGAGAGGCGCGGGGGGTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30522222 24 + 173848474 --------------GCCCAGGAGAGGCGCGGGGGGTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     229327 24 +   2037526 --------------GCCCAGGAGAGGCGCGGGGGGTAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74902371 23 + 122973662 --------------GCCCAGGAGAGGTGC-GGGGGTAG
i nomLeu3.chr1a            C 0 I 248
s rheMac8.chr4             30776195 23 + 172585720 --------------GCCCAGGAGAGGCGC-GGGGGTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30071332 23 - 170955103 --------------GCCCAGGAGAGGCGC-GGGGGTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     320642 23 +   1495729 --------------GCCCAGGAGAGGCGC-GGGGGTAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     418517 23 -    863181 --------------GCCCAGGAGAGGCGC-GGGGGTAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29570607 23 -  71996105 --------------GCCCAGGAGAGGCGC-GGGGTTAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     256465 23 -    735854 --------------GCCCAGGAGAGGCGC-GGGGGTAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     208694 23 -   1829203 --------------GCCCAGGAGAGGCGC-GGGGGTAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30381168 23 + 171630274 --------------GCGAGGGAGAGACGC-GGGGTTAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           204854 23 +    515838 --------------ACGCAGGAGAGGCGC-GGGGTTAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     836610 23 -   1771730 --------------GCGCAGGAGAGGCGC-GGGGTTAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     322418 23 -    383796 --------------GCGCAGGAGAGGCGC-GGGGTTAG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           253088 21 +  18854210 --------------GCCCAGGAGAGGCAC---GTGTAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58042948 23 -  94987271 --------------GCTCAGGGAGGGCCT-AGTGGAAA
i mm10.chr17               C 0 I 1
s canFam3.chr35            26295903 38 +  26524999 GCGGAGAGGGGTGTGGCAAGGGGGGCCAAGGGGAGTGG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               301379 484 + 123392446 I
e proCoq1.NW_012149775v1     105497 395 -   1411461 I

a score=1529716.000000
s hg38.chr6_GL000254v2_alt  1418528 130 +   4827813 ATGGGTGGTAAGACTGGGATGTGGAGAGGAGCCAGAGGCCCCAGCG---GCTGTTCTCCCGCACCTCGCCTCCACCCCTGGCCGCTCCTGCCTGGGGCCTTG---GGAGGAGCCGA-AATAACAATAACAAACAACA--
s panTro5.chr6             30291795 130 + 175400573 ATGGGTGGTAAGACTGGGATGTGGAGAGGAGCCAGAGGCCCCAGCG---GCTGTTCTCCCGCACCTCGCCTCCACCCCTGGCCGCTCCTGCCTGGGGCCTTG---GGAGGAGCCGA-AATAACAATAACAAACAACA--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30522246 130 + 173848474 ATGGGTGGTAAGACTGGGATGTGGAGAGGAGCCAGAGGCCCCAGCG---GCTGTTCTCCCGCACCTCGCCTCCACCCGTGGCCGCTCCTGCCTGGGGCCTTG---GGAGGAGCCGA-AATAACAATAACAAACAACA--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     229351 130 +   2037526 ATGGGTGGTAAGACTGGGATGTGGAGAGGAGCCAGAGGCCCCAGCA---GCTGTTCTCCCGCACCTCGCCTCCACCTGTGGCCGCTCCTGCCTGGGGCCTTG---GGAGGAGCCGA-AATAACAATAACAAACAACA--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74902642 130 + 122973662 ATGGGTGGTAGGACTGGGATGTGGAGAGGAGCCAGAGGCCCCAGCG---GCCGTTCTCCCTCACCTCGCCTCCACCCGTGGCCGCTCCTGCCTGGGGCCTTG---GGAGGAGCCGA-AATAACAATAACAAACAACA--
i nomLeu3.chr1a            I 248 C 0
s rheMac8.chr4             30776218 130 + 172585720 ATGGGTGGTAAGACTGGGATGTGGAGAGGAGCCAGAGGCCCCGGCG---GCCGTTCTCCCGCACCTCGCCTCCACCCGTGGCAGCTCCTGCCTGGGGCCTTG---GGAGGAGCCGA-AATAACAATAACAAACAACA--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30071355 130 - 170955103 ATGGGTGGTAAGACTGGGATGTGGAGAGGAGCCAGAGGCCCCGGCG---GCCGTTCTCCCGCACCTCGCCTCCACCCGTGGCCGCTCCTGCCTGGGGCCTTG---GGAGGAGCCGA-AATAACAATAACAAACAACA--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     320665 130 +   1495729 ATGGGTGGTAAGACTGGGATGTGGAGAGGAGCCAGAGGCCCCGGCG---GCCGTTCTCCCGCACCTCGCCTCCACCCGTGGCCGCTCCTGCCTGGGGCCTTG---GGAGGAGCCGA-AATAACAATAACAAACAACA--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     418540 130 -    863181 ACGGGTGGTAAGACTGGGATATGGAGAGGAGCCAGAGGCCCCGGCG---GCCGTTCTCCCGCACCTCGCCTCCACCCGTGGCCGCTCCTGCCTGGGGCCTTG---GGAGGAGTCGA-AATAACAATAACAAACAACA--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29570630 130 -  71996105 ATGGGTGGTAAGACTGGGATGTGGAGAGGAGCCAGAGGCCCCGGCG---GCCGTTCTCCCGCACCTCGCCTCCACCCGTGGCCGCTCCTGCCTGGGGCCTTG---GGAGGAGCCGA-AATAACAATAACAAACAACA--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     256488 130 -    735854 ACGGGTGGTAAGACTGGGATGTGGAGAGGAGCCAGAGGCCCCGGCG---GCCGTTCTCCCGCACCTCGCCTCCACCCATGGCCGCTCCTGCCTGGGGCCTTG---GGAGGAGTCGA-AATAACAATAACAAACAACA--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     208717 130 -   1829203 ATGGGTGGTAAGACTGGGATGTGGAGAGGAGCCAGAGGCCCCGGCG---GCCGTTCTCCCGCACCTCGCCTCCACCCATGGCCGCTCCTGCCTGGGGCCTTA---GGAGGAGCCGA-AATAACAATAACAAACAACA--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30381191 130 + 171630274 GTGGGTGTTAAGACTGAGATGTGGAGAGGAGCCAGAGGCCGCAAGG---ACGGTTCTCCAGCACCTCGCCTCCACCCGTCCCCGCTCCTGCCCGGGGCCCTG---GGAGGAGCCGA-AATAACAATAACAAACAACA--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           204877 130 +    515838 GTGGGTGTTAAGACTGAGATGTGGAGAGGAGCCAGAGATCGCAAGG---ACGGTTCTCCCGCACCTCACCTCCACCCATCGCCGCTCCTGCCTGGGGCCCTG---GGAGGAGCCGA-AATAACAATAACAAACAACA--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     836633 130 -   1771730 GTGGGTGCTAAGACTGAGATGTGGACAGGAGCCAGAGGCCGCAAGG---ACGGTTCTCCCGCACCTCGCCTCCACCCGTCGGCGCTCCTGCCTGGGGCCCTG---GGAGGAGCCGA-AATAACAATAACAAACAACA--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     322441 127 -    383796 GTGGGTGCTAAGACTGAGATGTGGAGAGGAGCCAGAGGCCGCAAGG---ACGGTTCTCCCGCACCTCGCCTCCACCCGTCGCCACTCCTGCCTGGGGCCCTG---GGAGGAGCCGA-AATAACAATAACA---AACA--
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           253109 129 +  18854210 GTGGGTGATAAAGCTGGCACGTAAGGAGGAACCAGAAGCCCCAATG---GCTGTTCTCCCG-ACCTTGCTTCCGTCCGTCG-CGCCCTTGCTTGGGGCCTTG---GGAGGAGCCAATAATAACAATAACAAACTACA--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58042972 122 -  94987271 -----CTTTATGGCTGCAACGTGGAGACTAGCAAGAGGCC-TGCCA---GCTGTTCACCCCGACCTAGCTTCCACCTGTTTCCGCCCGTGCCTGGGGATCTG---GGAGGAGCTGA-G--AACAATAACAACCCACA--
i mm10.chr17               I 1 I 146
s canFam3.chr35            26295941 102 +  26524999 AGAGGTGCAGAGAT--GCAGGAAGTGAGGAGTGCGGGGGCGCAGGGTGTGTGGGTCTCCC----------------------------------GGGCCCTGAGAGGGGGAGCCGG-AGATCCAGTAACAAGTAGGGCC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               301379 484 + 123392446 I
e proCoq1.NW_012149775v1     105497 395 -   1411461 I

a score=1047773.000000
s hg38.chr6_GL000254v2_alt  1418658 105 +   4827813 CAGGGCTTAGCTTGAGCCAGAGTCCGAGACCAACCCCCACGACGCTACGGGG-----------AGGTTTGGATATGCCCCAACCCCTTGCTCCCTTCCTCCATCCTCTTGTCAGTC
s panTro5.chr6             30291925 105 + 175400573 CAGAGCTTAGCTTGAGCCAGAGTCCGAGACCAACCCCCACGACGCTACGGGG-----------AGGTTTGGATATGCCCCAACCCCTTGCTCCCTTCCTCCATCCTCTTGTCAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30522376 105 + 173848474 CAGAGCTTAGCTTGAGCCAGAGTCCGAGACCAACCCCCACGACGCTACGGGG-----------AGGTTTGGATATGCCCCAACCCCTTGCTCCCTTCCTCCATCCTCTTGTCAGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     229481 105 +   2037526 CAGAGCTTAGCTTGAGCCAGAGTCCGAGACCAACCCCCACGACGCTACGGGG-----------AGGTTTGGATATGCCCCAACCCCTTGCTCCCTTCCTCCATCCTCTTGTCAGTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74902772 104 + 122973662 CACAGCTTAGCTTGAGCC-GAGTCCGGGACCAACCCCCACGACGCTAAGGGG-----------GGATTTGGATCTGCCCCAACCCCTTGCTCCCTTCCTCCATCCTCTTGTCAGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30776348 105 + 172585720 CACAGCTTAGCTTGAGCCGGAGTCTGGGACCAACCCCCACGACCCTACGGGG-----------ACGTTTGGATTTGCCCCAACCCCTTGCTCCCTTCCTCCATCCTCTTGTCAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30071485 105 - 170955103 CACAGCTTAGCTTGAGCCGGAGTCTGGGACCAACCCCCACGACCCTACGGGG-----------ACGTTTGGATTTGCCCCAACCCCTTGCTCCCTTCCTCCATCCTCTTGTCAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     320795 105 +   1495729 CACAGCTTAGCTTGAGCCGGAGTCTGGGACCAACCCCCACGACCCTACGGGG-----------ACGTTTGGATTTGCCCCAACCCCTTGCTCCCTTCCTCCATCCTCTTGTCAGTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     418670 105 -    863181 CACAGCTTAGCTTGAGCCGGAGTCTGGGACCAACCCCCACGACCCTACGGGG-----------ACGTTTGGATTTGCCCCAACCCCTTGCTCCCTTCCTCCATCCTCTTGTCAGTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29570760 105 -  71996105 CACAGCTTAGCCTGAGCCAGAGTCTGGGACCAACCCCCACGACGCTACGGGG-----------ACGTTTGGATTTGCCCCAACCCCTTGCTCCCTTCCTCCATCCTCTTGTCAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     256618 105 -    735854 CACAGCTTAGCTTGAGCCGGAGTCTGGGACCAACCCCCACGACGCTACGGGG-----------ACGTTTGGATTTGCCCCAACCCCTTGCTCCCTTCCTCCATCCTCTTGTCAGTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     208847 105 -   1829203 CACAGCTTAGCTTGAGCCGGAGTCCGGGACCAACCCCCACGACGCTACGGGG-----------ACGTTTGGATCTGCCCCAACCCCTTGCTCCCTTCCTCCATCCTCTTGTCAGTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30381321 102 + 171630274 CACAGCTTAGCTTGAGCCAGAGTCCGGGACCAACCCCCACGACGCTATAAGG-----------GCGTTTGCTTCTGCGC---TCCCCTCCCCACCTCTTCCATCCTCCGATCAATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           205007 101 +    515838 CACAGTTTAGCTGGAGCCAGAGTCCGGGACCAACCCCCGCGACGCTATAGGG-----------GCGTTTGGATCTGCGC---ACCCCTCCCCACTTCCTCCATCCTCTGATCAGT-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     836763 102 -   1771730 CACAGCTTAGCCTGAGCCAGAGTCCGCGACCAACCCCCACGACGCTATAGGG-----------GCGTTTGGATCTGCGC---TGCGCTCCCCACTTCCTCCATCCTCTGATCAGTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     322568 102 -    383796 CACAGCTTAGCTTGAGCCAGAGTCCGGGACCAACCCCCACTACGCTATAGGG-----------GCGTTTGGATCTGCGC---TCCCCTCCCCACTTCTTCCATCCTCTGATCAGTC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           253238  99 +  18854210 CACAGCTCAGCTAGAGCCTGAGTCTGGGGACCGACCCCACGACGCTACAGGG-----------GTGTTTGGATCTGCTC------CCCACTTCCTTCCTGCATCCTTTGGTCAGTC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26296043  94 +  26524999 CAGAGC--GGCTGAGGCCAGTGACCGGAG--GGACCCCTGGACGCTACGGGGGAAGGAGGGTAGGGTGTGGATCTGCTT---------------TCCCTCCATTCCATATGCA---
i canFam3.chr35            C 0 C 0
e micMur3.chr6               301379 484 + 123392446 I
e mm10.chr17               58043094 146 -  94987271 I
e proCoq1.NW_012149775v1     105497 395 -   1411461 I

a score=1202553.000000
s hg38.chr6_GL000254v2_alt  1418763 130 +   4827813 CCCTCCTCCCCAGCTTTTTCTCCGCCCCCAACCCACCAGCCCAGCCTCCTGCTCCCGCTCCTCTAAGCA---GGTTCTGCCCTCGCCCACCATCCTCCCAGGACCCCTCCTCACCCTCAGCTGG--GTCGGCTCT------
s panTro5.chr6             30292030 130 + 175400573 CCCTCCTCCCCAGCTTTTTCTCCGCCCCCAACCCACCAGCCCAGCCTCCTGCTCCCGCTCCTCTAAGCA---GGTTCTGCCCTCGCCCACCATCCTCCCAGGACCCCTCCTCACCCTCAGCTGG--GTCGGCTCT------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30522481 130 + 173848474 CCCTCCTCCACAGCTTTTTCTCCGCCCCCAACCCACCAGCCCAGCCTCCTGCTCCCGCTCCTCTAAGCA---GGTTCTGCCCTCGCCCACCGTCCTCCCAGGACCCCTCCTCACCCTCAGCTGG--GTCGGCTCT------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     229586 130 +   2037526 CCCTCCTCCCCAGCTTTTTCTCCGCCCCCAACCCACCAGCTCAGCCTCCTGCTCCCGCTCCTCTAAGCA---GGTTCTGCCCTCGCCCACCATCCTCACAGGACCCCTCCTCACCCTCAGCTGG--GTCGGCTCT------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74902876 130 + 122973662 CCCTCCTCCCCAGCCTTTTCTCCGCCCCCAACCCACCAGCCCAGCCTCCTGCTCCCGCTCCTCTAAGCA---GGTTCTGCCCTCGCCCACCCTCTTCCCAGGCCCCCTCCTCACCCTCACCTGG--GTCGGCTCC------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30776453 119 + 172585720 CCCTTCTCCCTAGTTTTTTCTCCG-----------CCAGCCCAGTCTCCTGCTCCCGCTCCTCTATGCA---GGTTCTGCCCTCGCCCACCATCCTCCCAGGCCCCCTACTCACCCTCACCTGG--GTCGGCTCC------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30071590 119 - 170955103 CCCTTCTCCCTAGTTTTTTCTCCG-----------CCAGCCCAGTCTCCTGCTCCCGCTCCTCTATGCA---GGTTCTGCCCTCGCCCACCATCCTCCCAGGCCCCCTACTCACCCTCACCTGG--GTCGGCTCC------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     320900 119 +   1495729 CCCTTCTCCCTAGTTTTTTCTCCG-----------CCAGCCCAGTCTCCTGCTCCCGCTCCTCTATGCA---GGTTCTGCCCTCGCCCACCATCTTCCCAGGCCCCCTACTCACCCTCACCTGG--GTCGGCTCC------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     418775 119 -    863181 CCCTCCTCCCTAGTTTTTTCTCCG-----------CCAGCCCAGTCTCCTGCTCCCGCTCCTCTATGCA---GGTTCTGCCCTCGCCCACCATCCTCCCAGGCCCCCTACTCACCCTCACCTGG--GTCGGCTCC------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29570865 119 -  71996105 CCCTCCTCCCCAGTTTTTTCTCCG-----------CCAGCCCGGTCTCCTGCTCCCGCTCCTCTATGCA---GGTTCTGCCCTCGCCCACCATCCTCCCAGGCCCCCTGCTCACCCTCACCTGG--GTCGGCTCC------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     256723 119 -    735854 CCCTCCTCCCCAGTTTTTTCTCCG-----------CCAGCCCAGTCTCCTGCTCCCGCTCCTCTATGCA---GGTTCTGCCCTCGCCCACCATCCTCCCAGGCCCCCTGCTCACCCTCACCTGG--GTCGGCTCC------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     208952 119 -   1829203 CCCTCCTCCCCAGTTTTTTCTCCG-----------CCAGCCCAGCCTCCTGCTCCCGCTCCTCTGTGCA---GGTTCTGCTCTCGCCCACCATCCTCCCAGGACCCCTGCTCACCCTCACCTGG--GTCGGCTCC------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30381423 128 + 171630274 TCCTCCTCTCCAGCTTTTTCTCCGCCACCCACCAACCGGCCGAACCTCCTACT-CCCCTCCTCTAAGCA---GATTCTGCCCTCGCCCACCATCCTCCCAGACCCCC-GCTCGCCCTCTCCTGG--GTCGGCTCC------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           205108 127 +    515838 --CCCCTCTCCAGCTTTTTCTCCGCCACCCACCAACCGGCCCAACCTCCTACTCCCCCTCCTCTAAGCA---GATTCTGCCCTCGCCCACCATCCTCCCAGACCCCC-GCTCGCCCTCGCCCGG--GTCGGCTCC------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     836865 129 -   1771730 CCCTCCTCTCCAGCTTTTTCTCCACCACCCACCAACCGGCCCAACCTCCTGCTCCCCCTCCTCTAAGCA---GATTCTGCCCTCGCCCACCATCCTCCCAGACCCCC-GCTCGCCCTCACCTGG--GTCGGCTCC------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     322670 129 -    383796 CCCTCCTCTCCAGCTTTTTCTCCACCACCCATCAACCGGCCCAACCTCCTGCTCCCCCTCCTCTAAGCA---GGTTCTACCCTCGCCCACCATCCTCCCAGACCGCC-GATCGCCCTCGCCTGG--GTCGGCTCC------
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           253337 118 +  18854210 CCTTCCTTCTCTACCGTCACCACC-----------CCCGCC-AGTCTCCTGCTCCCACTCCGCTCTGCT---AGTTCTTACCTCCCTCACCCTCCAGCCCGGCCCCCAGCTCGCCCTTGCCCCG--ATCGGCTTC------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58043240 118 -  94987271 CCCTCCATTTCTGCTTTTTCTGCAC----------CCAGTGTCAACCTTGGCTCCAGTGATTCTGTTTATTGGGTCCTA-------TCACCACCCTCCCTGGGCTGCTCCTTTCCCTAATCCGGGTGTCTGCACC------
i mm10.chr17               I 146 C 0
s canFam3.chr35            26296137  84 +  26524999 ----CCCCCCCA-------CACCC-----------CCCGCCGAGCCT---------------------A---GGTCTGATTCTAGGCCGTCCTCCTCCTGG---------CCGCGGCCACCTGG--GCTCCCTCCGGGTGT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               301379 484 + 123392446 I
e proCoq1.NW_012149775v1     105497 395 -   1411461 I

a score=1369770.000000
s hg38.chr6_GL000254v2_alt  1418893 130 +   4827813 CCCTTCCGCCCGCC-GCTCCCTCCCCT-CCGCCAGCTCTCC----TCCTCCCGGGCGCCT-GCGGCTGCCCTGCC--AAAACTTCTGCAG---------TTCCCATGCCCTTCGCGGCGACTCCAGGGCTCTCCGCGTTCTATCCGGT
s panTro5.chr6             30292160 130 + 175400573 CCCTTCCGCCCGCC-TCTCCCTCCCCT-CCGCCAGCTCTCC----TCCTCCCGGGCGCCT-GCGGCTGCCCTGCC--AAAACTTCTGCAG---------TTCCCGTGCCCTTCGCGGCGACTCCAGGGCTCTCTGCGTTCTATCCGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30522611 130 + 173848474 CCCTTCCGCCCGCC-GCTCCCTCCCCT-CCGCCAGCTCTCC----TCCTCCCGGGCGCCT-GCGGCTGCCCTGCC--AAAACTTCTGCAG---------TTCCCGTGCCCTTCGCGGCGACTCCAGGGCTCTCCGCGTTCTATCCGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     229716 130 +   2037526 CCCTTCCGCCCGCC-GCTCCCTCCCCT-CCGCCAGCTCTCC----TCCTCCCGGGCGCCT-GCGGCTGCCCTGCC--AAAACTTCTGCAG---------TTCCCGTGCCCTTCGCGGCGACTCCAGGGCTCTCCGCGTTCTATCCGGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74903006 130 + 122973662 CCTTTCCGCCCGCC-GCTCCCTCCCCT-CCGCCAGCTCTCC----TCCTCCCAGGTGCCT-GCGACTGCCCTGTC--AAAACTTCTGCAG---------TTCCCGTGCCCTTCGCGGCGACTCCAGGGCTCTCCGCGTTCTATCCAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30776572 129 + 172585720 CACTTTCGCCCGCC-TCTCCCTCCCCT-ACGCCAGCTCTC-----TCCTCCCGGGCGACT-GCGGCTGCCCTGCC--AAAACTTGTGCAG---------TTCCCGTGCCCTTCGCGGCGACTCCAGGGCTCTGCGCGTTCTATCCAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30071709 129 - 170955103 CACTTTCGCCCGCC-TCTCCCTCCCCT-ACGCCAGCTCTC-----TCCTCCCGGGCGACT-GCGGCTGCCCTGCC--AAAACTTGTGCAG---------TTCCCGTGCCCTTCCCGGCGACTCCAGGGCTCTGCGCGTTCTATCCAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     321019 129 +   1495729 CACTTTCGCCCGCC-TCTCCCTCCCCT-ACGCCAGCTCTC-----TCCTCCCGGGCGACT-GCGGCTGCCCTGCC--AAAACTTGTGCAG---------TTCCCGTGCCCTTCCCGGCGACTCCAGGGCTCTGCGCGTTCTATCCAGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     418894 129 -    863181 CACTTTCGCCCGCC-TCTCCCTCCCCT-CCGCCAGCTCTC-----TCCTCCCGGGCGCCT-GCGGCTGCCCTGCC--AAAACTTGTGCAG---------TTCCCGTGCCCTTCGCGGCGACTCCAGGGCTCTGCGCGTTCTATCCAGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29570984 127 -  71996105 CACTTCCGCCCGCC-TCTCCCTCCCCT-CCGCCAGCTCTT-------CTCCCGGGCGACT-GCGGCTGCCCTGCC--AAAACTTGTGCAG---------TTCCCGTGCCCTTCGTGGCGACTCCAGGGCTCTGCGCGTTCTATCCAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     256842 130 -    735854 CACTTTCGCCGGCC-TCTCCCTCCCCT-CCGCCAGCTCTTC----TCCTCCCGGGCGCCT-GCGGCTGCCCTGCC--AAAACTTGTGCAG---------TTCCCGTGCCCTTCGCGGCGACTCCAGGGCTCTGCGCGTTCTATCCTGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     209071 130 -   1829203 CACTTCCACCCGCC-TCTCCCTCCCCT-CCGCCAGCTCTTC----TCCTCCCGGACGCCT-GCGGCTGCCCTGCC--AAAACTTCTGCAG---------TTCTCGTGCCCTTCGCGGCGACTCCAGGGCTCTGCGCCTTCTATCCAGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30381551 130 + 171630274 CCTTTGCGCCCACC-GCTCCCTTCCCT-CCGCCAGCTCTCC----TCCTGCCCGGCGCCT-GCAGCGGCCCTGAA--AAAACTCCTGCAG---------TTCCCGCCCTCTTCGCGGCAACTCTAGGGCTCTCCGCGTTCTATCCAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           205235 130 +    515838 CCGTTGCTCCCGCC-GCTCCCTCCCCT-CCGCCAGCTCTCC----TCCTCCCGGGCGCCT-GCAGCGGCCCTGTC--AAAACTCCTGCAG---------TTCCCGCGCTCTTCGCGGCAACTCCAGGGCTCTCCGCGTTCCATCCAGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     836994 130 -   1771730 CCATTGCGCCCGCC-GCTCCCTCCCCT-CCGCCAGCTCTCC----TCCTCCCGGGCGCCT-GCAGCGGCCCTGTC--AAAACTCCTGCAG---------TTCCCGCGCTCTTCGCGGCAACTCCAGGGCTCTCTGCGTTGTATCCAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     322799 130 -    383796 CAGTTGCGCCCGCC-GCTCCCTCCCCT-CCGCCAGCTCTCC----TCCTCCCAGGCGTCT-GCGGCGGCCCTGTC--AAAATTCCTGCAG---------TTCCCGCGCTGTTCGCGGCAACTCTAGGGCTCTCCGCGTTCTAGCCAGT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     105892 127 -   1411461 CCCTCCCGCCCGCCGGCTCCCTCCCCT-CTGCCAGCTGTCC----TGCTCCCGCGCGCCCCG--GCTGTCCGGCC--CGAACTCCCGCAG---------TTCCCGCGCTCTTCGCGG-GGCTCCAGG--CTCTCGCGTGTTGTCCAGT
i proCoq1.NW_012149775v1   I 395 I 5
s otoGar3.GL873550           253455 128 +  18854210 CCTTTCCACCCACCAGTTCCCTCCCCT-CCACCAGCTGTCT----TGGTGCCGGGCGCCCAGCCACTGCCCTGCC--AGAACTTCCGCAG---------TTCCCGCGCTCTCCTAGG-GGTTTCCGG---GAGAGCATTATATATAGT
i otoGar3.GL873550         C 0 I 6
s mm10.chr17               58043358 133 -  94987271 -----CCATTCCCC-TTTCTGGCTCCC-ACCCCGGCTCTCCAGGAGGCTTCTGAGATCTC-TAGGGGGCTCAGCCTTCTAACTGCCACTAGCCTGTTTCTTTCTGCCTCTTCC-------CTCCAGCCTCCTCCTCCCCTGACCGAGT
i mm10.chr17               C 0 I 2
s canFam3.chr35            26296221  95 +  26524999 CCATTCCCCGCGCG-TCCCCCGCATCTCCCGCGAGCCCTGG----CGTTCCCGCG-GTCA-GC---------GCA--GGGGCTT----AG---------GTGCCGCCCCCT-------GACCTCGGGGT---------------CAGT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               301379 484 + 123392446 I

a score=1148570.000000
s hg38.chr6_GL000254v2_alt  1419023 84 +   4827813 -ACCCCTTCTCTGCCTCCC-CAGTCTCTTCTCTCCAGCCC----CTCTCACAAGGCTCAGGCATCGGTCCAGCCTCCTCCCCTGTGGACC
s panTro5.chr6             30292290 72 + 175400573 -ACCCCTTCTCTGCCTCCC-CAGTCTCTTCTCTCCAGCCC----CTCTCACAA------------GGTCCAGCCTCCTCCCCTGTGGACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30522741 84 + 173848474 -ACCCCTTCTCTGCCTCCC-CAGTCTCTTCTCTCCAGCCC----CTCTCACAAGGCTCAGGCATCGGTCCAGCCTCCTCCCCTGTGGACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     229846 84 +   2037526 -ACCCCTTCTCTGCCTCCC-CAGTCTCTTCTCTCCAGCCC----CTCTCACAAGGCTCAGGCATCGGTCCAGCCTCCTCCCCTGTGGACC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74903136 84 + 122973662 -ACCCCTTCTCTGCCTCCC-CAGTCTCTTCTCTCCAGCCC----CTCTCACAAGGCTCAGGCATCCGTCCAGCCTCCCCCACTGTGGACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30776701 88 + 172585720 -ACCCCTTCTCTGCCTCCC-CACTCTCTTCTCTCCAGCCCCTCTCTCTCACAAGGCTCAGGCATCCGTCCAGCCTCCTCCCCTGTGGACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30071838 84 - 170955103 -ACCCCTTCTCTGCCTCCC-CACTCTCTTCTCTCCAGCCC----CTCTCACAAGGCTCAGGCATCCGTCCAGCCTCCTCCCCTGTGGACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     321148 84 +   1495729 -ACCCCTTCTCTGCCTCCC-CACTCTCTTCTCTCCAGCCC----CTCTCACAAGGCTCAGGCATCCGTCCAGCCTCCTCCCCTGTGGACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     419023 84 -    863181 -ACCCCTTCTCTGCCTCCC-CACTATCTTCTCTCCAGCCC----CTCTCACAAGGCTCAGGCATCCGTCCAGCCTCCTCCCCTGTGGACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29571111 84 -  71996105 -ACCCCTTCTCTGCCTCCC-CACTCTCTTCTCTCCAGCCC----CTCTCACAAGGCTCAGGCATCCGTCCAGCCTCCTCCCCTGGGGACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     256972 84 -    735854 -ACCCCTTCTCTGCCTCCC-CACTATCTTCTCTCCAGCCC----CTCTCACAAGGCTCAGGCATCCGTCCAGCCTCCTCCCCTGTGGACC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     209201 84 -   1829203 -ACCCCTTCTCTGCCTCCC-CACTCTCTTCTCTCCAGCCC----CTCTCACAAGGCTCAGGCATCCGTCCAGCCTCCTCCCCTGTGGACC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30381681 84 + 171630274 -ACCCCTTCTCTGCCTTCC-CAATCTCTTCTCCCCAGCCA----CTCTCACAAGGCTCAGGCATCCGTCCAGCCTCCTCCCCTGTGAACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           205365 84 +    515838 -ACCCCTTCTCTGCCTCCC-CAATCTCTTCTCCCCAGCCC----CTCTCACAAGGCTCAGGCATCCGTCCAGCCTCCTCCCCTGTGAACC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     837124 84 -   1771730 -ACCCCTTCTCTGCCTCCC-CAATCTCTTCTCCCCAGCCC----CTCTCACAAGGCTCAGGCATCCGTCCAGCCTCCTCCCCTGTGAACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     322929 84 -    383796 -ACCCATTCTCTGCCTCCC-CAATCTCTTCTCCCCAGCCC----CTCTCACGAGGTTCAGGCATCCGTCCAGCCTCCTCCCCTGTGAACC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               301863 82 + 123392446 -ACCCCTTCTCTGCCTCCC---AACTCTTCTCTCCAGCTC----CTCTCTCTAGACTCAGGCACCCGATCGGCCTCCTCCCCTCTGGACC
i micMur3.chr6             I 484 C 0
s proCoq1.NW_012149775v1     106024 84 -   1411461 -AGCCCTTCTCTGCCTCCC-CAAACTCTTCTCTCCAGCTC----CTCTCTCTAGACTCAGGCACCCGATCATTCCCCTCCCCTCTGGACC
i proCoq1.NW_012149775v1   I 5 C 0
s otoGar3.GL873550           253589 85 +  18854210 -ACCCCTTCCTGGTCTCCCCCAAACTCCTCTCCCCAGCTC----CTCTCACAAGACTGAGGCATCTGATCTGCCCCCTACCCTCTGGACC
i otoGar3.GL873550         I 6 C 0
s mm10.chr17               58043493 84 -  94987271 -ATTTCTTCCAGCCTGTCC-TACCTCCCTTTCTCAAACTA----CTCACTCAAGACTTGGCCAGTCTTTCTCCCTCCCTCCCCGCTTCCT
i mm10.chr17               I 2 I 98
s canFam3.chr35            26296316 55 +  26524999 GGCACCTCCT----TCCCC-CGCTCGACCCTTCCCGGCGC----CTCCCCCGGGA-------------------------CCTGTGGCC-
i canFam3.chr35            C 0 C 0

a score=514563.000000
s hg38.chr6_GL000254v2_alt  1419107 44 +   4827813 AAGTGTCAACTCCATCCATCGTCCTTCCGGGCGCCTCTCACCTT
s panTro5.chr6             30292362 44 + 175400573 AAGTGTCAACTCCATCCATCGTCCTTCCGGGCGCCTCTCACCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30522825 44 + 173848474 AAGTGCCAACTCCATCCATCGTCCTTCCGGGCGCCTCTCACCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     229930 44 +   2037526 AAGTGTCAACTCCATCCATCGTCCTTCCGGGCGCCTCTCACCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74903220 44 + 122973662 AAGTGTCAACTCCATCCATCGTCCTTCTGGGCGCCTCTCACCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30776789 44 + 172585720 AAGTGTCAATCCATCCCATCGTCCCTTCGGCCGCCTCTCACCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30071922 44 - 170955103 AAGTGTCAACTCCATCCATCGTCCTTCCGGGCGCCTCTCACCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     321232 44 +   1495729 AAGTGTCAACTCCATCCATCGTCCTTCCGGGCGCCTCTCACCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     419107 44 -    863181 AAGTGTCAACTCCATCCATCGTCCTTCCGGGCGCCTCTCACCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29571195 44 -  71996105 AAGTGTCAACTCCATCCATCGTCCTTCCGGGCGCCTCTCACCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     257056 44 -    735854 AAGTGTCAACTCCATCCATCGTCCTTCCGGGCGCCTCTCACCTT
i manLeu1.NW_012107142v1   C 0 M 544
s colAng1.NW_012115577v1     209285 44 -   1829203 AAGTGTCAACTCCATCTATCGTCCTTCCGGACGCCTCTCACCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30381765 43 + 171630274 AAGTGTCAACTCC-TCTTTCGTGCTTCTCGGCGTCTCGCACTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           205449 43 +    515838 AAGTGTCGACTCC-TCTTTCGTCCTTCCCGGCGCCTCGCACTTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     837208 43 -   1771730 AAGTGTCAACTCC-TCTTTCGTCCTTCCCGGAGCCTCGCACCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     323013 43 -    383796 AAGTGTCAACTCC-TCTTTCGTCCTTCCCGGCGCCTCGCACCTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               301945 42 + 123392446 AAGTGTCAACTCC--TCATCGTCCTTCAGGACACCTCTCACCGT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     106108 42 -   1411461 AAGTGTCAACCCC--TCATCGTCCTTCGGGGCACCTCTCACCTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           253674 42 +  18854210 AAGTATCAACTCC--TTATCCACCTTCAGGGCACCTCTCACCTC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26296371 29 +  26524999 AGCCGCCCGCCAC-CCCCCCATCCT-------GCCTC-------
i canFam3.chr35            C 0 C 0
e mm10.chr17               58043577 98 -  94987271 I

a score=152573.000000
s hg38.chr6_GL000254v2_alt  1419151 16 +   4827813 GAGGACCCAGGGT----CCT
s panTro5.chr6             30292406 16 + 175400573 GAGGACCCAGGGT----CCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30522869 16 + 173848474 GAGGACCCAGGGT----CCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     229974 16 +   2037526 GAGGACCCAGGGT----CCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74903264 16 + 122973662 GAGGACCCAGGGT----CCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30776833 20 + 172585720 GAGGACCCAGGGTCAGCCCT
i rheMac8.chr4             C 0 I 5607
s macFas5.chr4             30071966 20 - 170955103 GAGGACCCAGGGTCAGCCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     321276 20 +   1495729 GAGGACCCAGGGTCAGCCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     419151 20 -    863181 GAGGACCCAGGGTCAGCCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29571239 20 -  71996105 GAGGACCCAGGGTCAGCCCT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     209329 20 -   1829203 GAGGACCCAGGGTCAGCCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30381808 20 + 171630274 AAGGAACCAGGGTCAGCCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           205492 20 +    515838 GAGGAGCCAGGGTCAGCCCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     837251 20 -   1771730 GAGGAGCCAGGGTCAGACCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     323056 20 -    383796 GAGGAGCCAGGGTCAGCCCT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               301987 16 + 123392446 GAGGACCCGGGGTCGC----
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     106150 16 -   1411461 GAGGACCCGGGGTCAC----
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           253716 16 +  18854210 GGGGACCCAGGGTCTG----
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26296400  8 +  26524999 -----------GCCACCCC-
i canFam3.chr35            C 0 C 0
e mm10.chr17               58043577 98 -  94987271 I
e manLeu1.NW_012107142v1     257100 544 -    735854 M

a score=55811.000000
s hg38.chr6_GL000254v2_alt  1419167 5 +   4827813 CGCCC
s panTro5.chr6             30292422 5 + 175400573 CGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30522885 5 + 173848474 CGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     229990 5 +   2037526 CGCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74903280 5 + 122973662 CGTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30782460 5 + 172585720 CGCCC
i rheMac8.chr4             I 5607 C 0
s macFas5.chr4             30071986 5 - 170955103 CGCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     321296 5 +   1495729 CGCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     419171 5 -    863181 CGCCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29571259 5 -  71996105 CGCCC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     209349 5 -   1829203 CACCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30381828 5 + 171630274 CGCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           205512 5 +    515838 CGCCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     837271 5 -   1771730 CGCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     323076 5 -    383796 CGCTC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               302003 5 + 123392446 CCGCC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     106166 5 -   1411461 CCACC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           253732 5 +  18854210 CCCCC
i otoGar3.GL873550         C 0 I 4
s canFam3.chr35            26296408 5 +  26524999 CTCTC
i canFam3.chr35            C 0 C 0
e mm10.chr17               58043577 98 -  94987271 I
e manLeu1.NW_012107142v1     257100 544 -    735854 M

a score=248507.000000
s hg38.chr6_GL000254v2_alt  1419172 17 +   4827813 CCTCAT-CCTTTGCTTTT
s panTro5.chr6             30292427 17 + 175400573 CCTCAT-CCTTTGCTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30522890 17 + 173848474 CCTCAG-CCTTCGCTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     229995 17 +   2037526 CCTCAT-CCTTTGCTTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74903285 17 + 122973662 CCTCAT-CCTTTGCTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30782465 17 + 172585720 CCTCAT-CCTTTGCTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30071991 17 - 170955103 CCTCAT-CCTTTGCTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     321301 17 +   1495729 CCTCAT-CCTTTGCTTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     419176 17 -    863181 CCTCAT-CCTTTGCTTTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29571264 17 -  71996105 CCTCAT-CCTTTGCTTTT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     209354 17 -   1829203 CTTCAT-CCTTTGCTTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30381833 17 + 171630274 CCTCAT-CCTTTGCTTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           205517 17 +    515838 CCTCAT-TCTTTGCTTTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     837276 17 -   1771730 CCTCAT-CCTTTGCTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     323081 17 -    383796 CCTCAT-CCTTTGCTTTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               302008 17 + 123392446 CCTCAT-CCTTTGCTTTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     106171 17 -   1411461 CCTCAT-CCTTTGCTTTT
i proCoq1.NW_012149775v1   C 0 I 94
s otoGar3.GL873550           253741 17 +  18854210 CCTCAT-CTTTTGCTCCC
i otoGar3.GL873550         I 4 C 0
s mm10.chr17               58043675 17 -  94987271 cctcctgcctccgcttt-
i mm10.chr17               I 98 C 0
s canFam3.chr35            26296413 17 +  26524999 CCCCGT-CCTTTGCATTC
i canFam3.chr35            C 0 C 0
e manLeu1.NW_012107142v1     257100 544 -    735854 M

a score=414743.000000
s hg38.chr6_GL000254v2_alt  1419189 37 +   4827813 CTC-TCCCCACCCCATCCTTTGCCTAAACTTCCACAGG
s panTro5.chr6             30292444 37 + 175400573 CTC-TCCCCACCCCATCCTTTGCCTAAACTTCCACAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30522907 37 + 173848474 CTC-TCCCCACCCCATCCTTTGCCTAAACTTCCACAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     230012 37 +   2037526 CTC-TCCCCACCCCATCCTTTGCCTAAACTTCCACAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74903302 38 + 122973662 CTCTTCCCCACCCCATCCTTTGCCTAAACTTCCACGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30782482 37 + 172585720 CTC-TGCCCACCCCATCCTTTGCCTGAACTTCCACAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30072008 37 - 170955103 CTC-TGCCCACCCCATCCTTTGCCTGAACTTCCACAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     321318 37 +   1495729 CTC-TGCCCACCCCATCCTTTGCCTGAACTTCCACAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     419193 37 -    863181 CTC-TGCCCACCCCATCCTTTGCCTGAACTTCCACAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29571281 37 -  71996105 CTC-TGCCCACCCCATCCTTTGCCTGAACTTCCACAGG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     209371 37 -   1829203 CTC-TGCCCACCCTATCCTTTGCCTAAACTTCCACAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30381850 37 + 171630274 CTC-TCCCCACCCCATCCTTTGCCTAAACTTCCACAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           205534 37 +    515838 CTC-TCCCCACCCCATCCTTTGCCTAAACTTCCACAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     837293 37 -   1771730 CTC-TCCCCACCCCATCCTTTGCCTAAATTTCCACAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     323098 37 -    383796 CTC-TCCCCACCCCATCCTTTGCCTAAACTTCCACAGT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               302025 33 + 123392446 CTC-CCCCAAC----TCCCTTGCCTAAACTTCCGCAGG
i micMur3.chr6             C 0 I 60
s otoGar3.GL873550           253758 33 +  18854210 CCC-CCCCAAC----TCTCTTGCCTAAACTTTCATAAG
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58043692 37 -  94987271 ctg-gtgccaagctgtctgccaccTATATTTCCATTAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26296430 33 +  26524999 -----CTCTGATCCGTTCCTTGCCTAAACTTCCAGAAG
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012149775v1     106188 94 -   1411461 I
e manLeu1.NW_012107142v1     257100 544 -    735854 M

a score=620978.000000
s hg38.chr6_GL000254v2_alt  1419226 75 +   4827813 GCCTCCGGCTCC-AGACGTGCCATTCCCGGCTTCCCCGG---------GAACCTCCCGCTTCCACCAACAACT------CCGCG------ACGCGCG
s panTro5.chr6             30292481 75 + 175400573 GCCTCCGGCTCC-AGCCGTGCCATTCCCGGCTTCCCCGG---------GAACCTCCCGCTTCCACCAACAACT------CCGCG------ACGCGCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30522944 75 + 173848474 GCCTCCGGCTCC-AGACGTGCCATTCCCGGCTTCCCCGG---------GAACCTCCCGCTTCCACCAACAACT------CCGCG------ACGCGCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     230049 75 +   2037526 GCCTCCGGCTCC-AGACGTGCCATTCCCGGCTTCCCCGG---------GAACCTCCCGCTTCCACCAACAACT------CCGCG------ACGCGCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74903340 75 + 122973662 GCCTCCGGCTCC-AGATGTGCCATTCCCGGCTTCCCCGG---------AAACCTCCCGCTTCCACCAACAACT------CCGCG------ACGCGCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30782519 84 + 172585720 GCCTCCGGCTCC-AGACTTGCCATTCTCGGCTTCCCCGGGGAACCCATGAACCTCCGGCTTCCACCAACAACT------CCACG------ACGCGCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30072045 84 - 170955103 GCCTCCGGCTCC-AGACTTGCCATTCTCGGCTTCCCCGGGGAACCCATGAACCTCCGGCTTCCACCAACAACT------CCACG------ACGCGCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     321355 84 +   1495729 GCCTCCGGCTCC-AGACTTGCCATTCTCGGCTTCCCCGGGGAACCCATGAACCTCCGGCTTCCACCAACAACT------CCACG------ACGCGCG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     419230 84 -    863181 GCCTCCGGCTCC-AGACTTGCCATTCCCGGCTTCCCCGGGGAACCCATGAACCTCCGGCTTCCACCAACAACT------CCACG------ACGCGCG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29571318 84 -  71996105 GCCTCCGGCTCT-AGACTTGCCATTCCCGGCTTCCCCGGGGAACCCATGAACCTCCGGCTTCCACCAACAACT------CCACG------ACGCGCG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     209408 84 -   1829203 GCCTCCGGCTCC-AGGCTTGCCATTCCCGGCTTCCCCGGGGAACCCATGAACTTCCCGCTTCCACCAACAACT------CCGCG------ACGCGCG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30381887 90 + 171630274 GGCTCCGCCTCC-GGAGGTGCCATTCCTGGCTTCCCCGAGGAACCCAGAAACCTCCCCCTTACACCAACAACT------CCGCACTCGCAACGCGCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           205571 90 +    515838 GGGCCCGGCTCC-GGAGGTGCCATTCCCGGCTTTCCCCGGGAACCCAGGAACCTCCCCCTTACACCAACAACT------CCGCACTCGCAACGCGCG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     837330 90 -   1771730 GGCTCCGGCTCC-GGAGATGCCGTTCCCGGCTTTGCCGGGGAACCCAGGAACCTCTCCCTTACACCAACAACT------CCGCACTCGCAACGCGCG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     323135 90 -    383796 GGCTCCGGCTCC-GGAGGTGCCATTCCCGACTTCCCCGGGGAACCCAGGAACCTCCCCCTCACACCAACAACT------CCGCACTCGCTACGCGCG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           253792 84 +  18854210 GGCTCTGGCTCA-GGAGGTAACA-TCCCGGCT-----GGGGAACCCATAAACCAACCCCTTCCACCAACAGCTGCTGACCCGCG------ACGCGCA
i otoGar3.GL873550         I 1 I 1
s mm10.chr17               58043729 85 -  94987271 GGCTTCAGAGCG-AAAAGCATGGCTCCCACCTTTGCTAGGACACCCACAAACCTCT--TCTTCACCAACAACC--AGAACCGGA------GAAGGC-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26296463 59 +  26524999 AGCCCCGCCGCCGGGAGCCCCCGCGCCTAACCCCCGCGG-----CGGCAGGTCACC------CACCGGGA---------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               302058 60 + 123392446 I
e proCoq1.NW_012149775v1     106188 94 -   1411461 I
e manLeu1.NW_012107142v1     257100 544 -    735854 M

a score=7186670.000000
s hg38.chr6_GL000254v2_alt  1419301 451 +   4827813 CCCAGCCTCACCTCTCCGGGCAGGTCCAGGCAGCCCATGGTGGGGATGCGCCCCCCTCGGCGTCTCCCCGCACGGGCCCCAGGCTCAGCCAGCTTCTCTCGCAGCTCGCGGCTGATTCGCACCTCCACCGCCAGCCGCACATTAGACCTCAGGCTGCGGCGGGGACACGGCAGGCCGCAGCAGGGACAGGCGGTGGGGGAAGCCTCGGTGCCGGTCGCCGGCGGAGTCCCCCAGCGGCGGGCCAGACACGCGCGGCAGAAGCTGTGCTCGCACGCCAGAAGCACCGGGTCCTCGAAGGAGCCCCCGCACAGAGGACACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTCGGGCGCATCCATGGAAAGCCAGGATCTGGACGCCGCCCCTTCCGCGACCACCGTGACCGCCTTCGAGCGCGCAGATGGCGGGCCGCCCC
s panTro5.chr6             30292556 451 + 175400573 CCCAGCCTCACCTCTCCGGGCAGGTCCAGGCAGCCCATGGTGGGGATGCGCCCCCCTCGGCGTCTCCCCGCACGGGCCCCAGGCTCAGCCAGTTTCTCTCGCAGCTCGCGGCTGATTCGCACCTCCACCGCCAGCCGCACATTAGACCTCAGGCTGCGGCGGGGACACGGCAGGCCGCAGCAGGGACAGGCGGTGGGGGACGCCTCGGTGCCGGTCGCCGGCGGAGTCCCCCAGCGGCGGGCCAGACACGCGCGGCAGAAGCTGTGCTCGCACGCCAGAAGCACCGGGTCCTCGAAGGAGCCCCCGCACAGAGGACACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTCGGGCGCATCCATGGAAAGCCAGGATCTGGACGCCGCCCCTTCCGCGACCACCGTGACCGCCTTCGAGCGCGCAGATGGCGGGCCGCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30523019 451 + 173848474 CCCAGCCTCACCTCTCCGGGCAGGTCCAGGCAGCCCATGGTGGGGATGCGCCCCCCTCGGCGTCTCCCCGCACGGGCCCCAGGCTCAGCCAGCTTCTCTCGCAGCTCGCGGCTAATTCGCACCTCCACCGCCAGCCGCACATTAGACCTCAGGCTGCGGCGGGGACACGGCAGGCCGCAGCAGGGACAGGCGGTGGGGGAAGCCTCGGTGCCGGTCGCCGGCGGAGTCCCCCAGCGGCGGGCCAGACACGCGCGGCAGAAGCTGTGCTCGCACGCCAGAAGCACCGGGTCCTCGAAGGAGCCCCCGCACAGAGGACACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTCGGGCGCATCCATGGAAAGCCAGGATCTGGACGCCGCCCCTTCCGCCACCACCGTGACCGCCTTCGAGCGCGCAGATGGCGGGCCGCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     230124 450 +   2037526 CCCAGCCTCACCTCTCCGGGCAGGTCCAGGCAGCCCATGGTGGGGATGCGCCCCCCTCGGCGTCTCCCGGCATGGGCCCCAGGCTCAGCCAGCTTCTCTCGCAGCTCGCGGCTGATTCGCACCTCCACCGCCAGCCGCACATTAGACCTCAGGCTGCGGCGGGGACACGGCAGGCCGCAGCAGGGACAGGCGGT-GGGGAAGCCTCGGTGCCGGTCGCCGGCGGAGTCCCCCAGCGGCGGGCCAGACACGCGCGGCAGAAGCTGTGCTCGCACGCCAGAAGCACCGGGTCCTCGAAGGAGCCCCCGCACAGAGGACACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTTGGGCGCATCCATGGAAAGCCAGGATCTGGACGCCGCCCCTTCCGCGACCACCGTGAGCGCCTTCGAGCGCGCAGATGGCGGGCCGCCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74903415 451 + 122973662 CCCAGCCTCACCTCTCCGGGCAGGTCCAGGCAGCCCATGGTGGGGATGCGCCCCCCTCGGCGTCTCCCCGCACGGGCCCCAGGCTCAGCCAGCTTCTCTCGCAGCTCGCGGCTGATTCGCACCTCCACCGCCAGCCGCACATTAGACCTCAGGCTGCGGCGGGGACACGGCAGGCCGCAGGAGGGACAGGCGGTGGGGGAAGCCTCGGTGCCGGTCGCCGGCGGAGTCCCCCAGCGGCGGGCCAGACACGCGCGGCAGAAGCTGTGCTCGCACGCCAGAAGCACCGGGTCCTCGAAGGAGCCCCCGCACAGAGGACACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTCGGGCGCATCCATGGAAAGCCAGGATCTGGACGCCGCCCCTTCCGCGACCACCGTGACCGCCTTCGAGCGCGCAGATGGCGGGCCGCCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30782603 451 + 172585720 CCCAACCTCACCTCTCCGGGCGGGTCCAGGCAGCCCATGGTGGGGATGCGCCCCCCTCGGCGTCTCCCCGCACGGGCCCCAGGCTCAGCCAGCTTCTCTCGCAGCTCACGGCTGATTCGCACCTCCACTGCCAGCCGCACATTAGACCTCAggctgcggcggggacacggcaggccgcagcaggggcaggcggtgggggaagcctcggtgtcggtcgccggcggGGTCCCCCAGCGGCGGGCCAGACACGCGCGGCAGAAGCTGTGCTCGCACGCCAGAAGCACCGGGTCCTCGAAGGAGCCCCCGCACAGAGGACACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTCGGGCGCATCCATGGAAAGTCGGGATCTGGACGCCGCCCCTTGCGCGACCACCGCGACCGCCTTCGAGCGCGCAGATGGCGGGCCGCCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30072129 451 - 170955103 CCCAACCTCACCTCTCCGGGCGGGTCCAGGCAGCCCATGGTGGGGATGCGCCCCCCTCGGCGTCTCCCCGCACGGGCCCCAGGCTCAGCCAGCTTCTCTCGCAGCTCACGGCTGATTCGCACCTCCACTGCCAGCCGCACATTAGACCTCAggctgcggcggggacacggcaggccgcagcaggggcaggcggtgggggaagcctcggtgtcggtcgccggcggGGTCCCCCAGCGGCGGGCCAGACACGCGCGGCAGAAGCTGTGCTCGCACGCCAGAAGCACCGGGTCCTCGAAGGAGCCCCCGCACAGAGGACACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTCGGGCGCATCCATGGAAAGTCGGGATCTGGACGCCGCCCCTTGCGCGACCACCGCGACCGCCTTCGAGCGCGCAGATGGCGGGCCGCCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     321439 451 +   1495729 CCCAACCTCACCTCTCCGGGCGGGTCCAGGCAGCCCATGGTGGGGATGCGCCCCCCTCGGCGTCTCCCCGCACGGGCCCCAGGCTCAGCCAGCTTCTCTCGCAGCTCACGGCTGATTCGCACCTCCACTGCCAGCCGCACATTAGACCTCAGGCTGCGGCGGGGACACGGCAGGCCACAGCAGGGGCAGGCGGTGGGGGAAGCCTCGGTGTCGGTCGCCGGCGGGGTCCCCCAGCGGCGGGCCAGACACGCGCGGCAGAAGCTGTGCTCGCACGCCAGAAGCACCGGGTCCTCGAAGGAGCCCCCGCACAGAGGACACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTCGGGCGCATCCATGGAAAGTCGGGATCTGGACGCCGCCCCTTGCGCGACCACCGCGACCGCCTTCGAGCGCGCAGATGGCGGGCCGCCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     419314 451 -    863181 CCCAACCTCACCTCTCCGGGCGGGTCCAGGCAGCCCATGGTGGGGATGCGCCCCCCTCGGCGTCTCCCCGCACGGGCCCCAGGCTCAGCCAGCTTCTCTCGCAGCTCACGGCTGATTCGCACCTCCACTGCCAGCCGCACATTTGACCTCAggctgcggcggggacacggcaggccgcagcaggggcaggcggtgggggaagcctcggtgtcggtcgccggcggGGTCCCCCAGCGGCGGGCCAGACACGCGCGGCAGAAGCTGTGCTCGCACGCCAGAAGCACCGGGTCCTCGAAGGAGCCCCCGCACAGAGGACACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTCGGGCGCATCCATGGAAAGTTGGGATCTGGACGCCGCCCCTTGCGCGACCACCGCGACCGCCTTCGAGCGCGCAGATGGCGGGCCGCCCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29571402 451 -  71996105 CCCAACCTCACCTCTCCGGGCGGGTCCAGGCAGCCCATGGTGGGGATGCGCCCCCCTCGGCGTCTCCCCGCACGGGCCCCAGGCTCAGCCAGCTTCTCTCGCAGCTCACGGCTGATTCGCACCTCCACTGCCAGCCGCACATTAGACCTCAGGCTGCGGCGGGGACACGGCAGGCCGCAGCAGGGACAGGCGGTGGGGGAAGCCTCGGTGTCGGTCGCCGGCGGGGTCCCCCAGCGGCGGGCCAGACACGCGCGGCAGAAGCTGTGCTCACACGCCAGAAGCACCGGGTCCTCGAAGGAGCCCCCGCACAGAGGACACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTCGGGCGCATCCATGGAAAGTCGGGATCTGGACGCCGCCCCTTGCGCGACCACCGCGACCGCCTTCGAGTGCGCAGATGGCGGGCCGCCCC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     209492 442 -   1829203 CCCAACCTCACCTCTCCAGGCGGGTCCAGGCAGCCCATGGTGGGGATGCGCCCCCCTCGGCGTCTCCCCGCACGGGCCCCAGGCTCAGCCAGCTTCTCTCGCAGCTCACGGCTGATTCGCACCTCCACTGCCAGCCGCACATTAGACCTCAGGCTGCGGCGGGGACACGGCAGGCCGCAGCAGGGACAGGCGGTGGGGGAAGCCTCGGTGTCGGTCGCCGGCGGGGTCCCCCAGCGGCGGGCCAGACACGCGCGGCAGAAGCTGTGCTCGCACGCCAGAAGCACCGGGTCCTCGAAGGAGTCCCCGCACAGAGGACACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTCGGGCGCATCCATGGAAAGTTGGGATCTGGACGCCGCCCCTT---------CCGCGACCGCCTTCGAGCGCGCAGATGGCAGGCCGCCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30381977 451 + 171630274 CCCAGCCTCACCTCTCCGTGCGGGTCCAGAGAGCCCATGGTGGGGATGCGCCCCCCTCGGCGTCTCCCAGCGAGGGCCCCAGGCTCAGCCAGCTTCTGTCGCAGCTCGCGGCTGATCCGCACCTCCACCGCCAACCGCACATTAGACCTCAAGCTGCGGCGGGGACACGGCAGGCCGCAGCAGGGACAGGCGGTGGGGGAAGCCTCGGTGCCAGTCGCCGGCGGGGTCCCCCAGCGACGGGCCAGACACGCGCGGCAGAAGCTGTGCTCGCACGCCAGCAGCACCGGGTCCTCGAAGGGGCCCCCGCACAGAGGACACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTCAGGCGCATCCATGGAAAGCCGGGATCTGGACGCCGCCCTTTCCGCGACCACCGCGACCGCCTTCGAGCGCGCAGATGGCGGGCCGCCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           205661 451 +    515838 CCCAGCCTCACCTCTCCGTGTGGGTCCAGGCAGCCCATGGTGGGGATGCGCCCCCCGCGGCGTCTCCCCGCGAGGACCCCAGGCTCAGCCAGCTTCTGTCGCAGCTCGCGGCTGATCCGCACCTCCACCGCCAGCCGCACATTAGACCTCAGGCTGCGGCGGGGACACGGCAGGCCGCAGCAGGGACAGGCGGTGGGGGAAGCCTCTGTGCCAGTCGCCGGCGGGGTCCCCCAGCAACGGGCCAGACACGCGCGGCAGAAGCTGTGCTCACACGCCAGCAGCACCGGGTCCTCGAAGGGGCCCCCGCACAGAGGACACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTCGGGCGCATCCATGGAAAGCCGGGATCTGGACGCCGCCCTTTCCGCGACCACCGCGACCGCCTTCGAGCGCGCAGATGGCGGGCCGCCCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     837420 451 -   1771730 CCCAGCCTCACCTCTCCGTACGGGTCCAGAGAGCCCATGGTGGGGATGCGCCCCCCTCGGCGTCTCCCCGCGAGGGCCCCAGGCTCAGCCAGCTTCTGTCGCAGCTCGCGGCTGATCCGCACCTCCACTGCCAGCCGCACATTAGACCTCAGGCTGCGGCGGGGACACGGCAGGCCGCAGCAGGGACAGGCGGTGGCGGAAGCCTCGGTGCCAGTCGCCGGCGGGGTCCCCCAGCGACGGGCCAGACACGCGCGGCAGAAGCTGTGCTCGCACGCCAGTAGCACCGGGTCCTCGAAGGGGCCCCCGCACAGAGGACACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCTGGGCCCAGCTCGGGCGCATCCATGGAAAGCCGGTATCTGGACGCCGCCCTTTCCGCGACCACCGCGACCGCCTTCGAGCGCGCAGATGGCGGGCCGCCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     323225 451 -    383796 CCCAGTCTCACCTCTCCGTGCGGGTCCAGGCAGCCCATGGTGGGGATGCGCCCCCCTCGGCGTCTCCCCGCGAGGGCCCCAGGCTCAGCCAGCTTCTGTCGCAGCTCGCGGCTGATCCTCACCTCCACCGCCAGCCGCACATTAGACCTCAGGCTGCGACGGGGACACGGCAGGCCGCAGCAGGGACAGGCGGTGGGGGAAGCCTCGGTGCCAGTCGCCGGCGGGGTCCCCCAGCGACGTGCCAGACACGCGCGGCAGAAGCTGTGCTCGCACGCCAGCAGCACCGGGTCCTCGAAGGGGCCCCCGCAGAGAGGACACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTCGGGCGCATCCATGGAAAGCCGGGATCTGGACGCCGCCCTTTCCGCGACCACCGCCACCGCCTTCGAGCGCGCAGATGGCGGGCCGCCCC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               302118 451 + 123392446 CCCAGCTTCACCTCTGCGCGCGGGTCCAGGCAGCCCATGGTGGGGATGCGGCCCCCTCGGCGTCTCCCCGCGCGGGCCGCAGGCTCGGCCAGCTTCTCCCGAAGCCCGCGGCTGATCCGCACCTCCACGGCCAGCCGCACGTTCGACCTCAggcagcggcgggggcacggcaggccgcagcaggggcaggcggtggggggagcctcggtgccggccgccggcggggcCCCCCAGCAGCCAGCCAGACACGCGCGGCAGAAGCTGTGCTCGCACGCCAGAAGCACCGGGTCCTCGAAGGGGCCCCCGCACAGCGGACACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTCGGGCGCATCCATGGGGGCGCGGGGTCTGCACGCCGCCCCTTCCGCGACCTCCGCGACCGCCTCGGAGCGCGCAGATGGCGGGCGAGTCC
i micMur3.chr6             I 60 C 0
s proCoq1.NW_012149775v1     106282 451 -   1411461 CCCGGCCTCACCTCTGTGTGCGGGTCCAGGCAGCCCATGGTGGGGATGCGGCCCCCTCGGCGTCTCCCCGCGCGGGACCCAGGCTCGGCCAGCTTCTCCCGCAGCCCGCGGCTGATCCGCACCTCCACCGCCAGCCGCACATTCGACCTCAGGCAGCGGCGGGGGCACGGCAGGCCGCAGCAGGGGCAAGCGGTGGGGGAAGCCTCCGTGCCGGCCGCCGGCGGGGTCCCCCAGCAGCCGGCCAGACACGCGCGGCAGAAGCTGTGCTCACACGCCAGAAGCACCGGGTCCTCGAAGGGGCCGCTGCACAGCGGACACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTCCGGCGCATCCATGGGGAGCCCGGGTCTGAACGCCGCCCCTTCCTCGACCTCCGCGACCGCCTTCGAGCGCACAGATGGCCGGCCGGCCC
i proCoq1.NW_012149775v1   I 94 C 0
s otoGar3.GL873550           253877 451 +  18854210 CCCAGCCTCACCTCTGCATGCGGGTCTAGGCAGCCCATGGTAGGGATGCGGCCCCCTCGACGTCTCCCCGCGCGGGCCCCAGGCTCTGCCAGCTTCTCCCGCAGCCCGCGACTGATCCGCACCTCCACCGCCAGCCGCACATTAGATCTCAGGCAGCGGCGGGGGCACGGCAGGCCGCAGCAAGGGCAGGCGGTGGCTGAAGCCTCGGCGCCGGTCGTCGGCGGGGTCCCCCAGCAGCGGGCCAGACACGCGCGGCAGAAGCTGTGCTCACACGCCAGAAGCACCGGGTCCTCGAAAGGGCCCCCGCACAGCGGACACGTCGCCAACTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTCGGGAGCATCCATGAGGAGCCGGGGTCTGGACGCCTCCCCTTCCGCGACCACCGCGACCGCCTTCGAGCGCGCAGATGGTGGGCCGGCCT
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58043814 438 -  94987271 ----GCCTTACCTCTCCGTGGGGATCCAGGCAACCCATGGTGGGGATGCGGCCACCGCGTCGTCTCCCGGCCCGGGCTCCGGGCTCCGCCAGTTTCTCACGCAGCCCACGGCTGATGCGCACCTCCACTGCCAGTCGCACGTTGGACCTCAGGCTGCGTCTGGGGCATGGCTGGCCACAGCACGGGCAGGAAGGGGGCGCCGCCTCCGAGCCGGACGCCGCCGGGGCCCCCCAGCAGCGCGCCAAGCACGCACGGCAGAAGCTGTGTTCGCACGCCAGCAGGACTGGGTCCTCGAAGGGGCCCCCGCACAGCGGACATGTCGCCAGCTGCTCCAGACGCTCCACCAACCCCGGGCCCAGCTCGGGAGCCTCCATGGAAAGCAGGGGTCCCGACGCACCCTAGT---------CCTCAGCCGCCCCCGAGCTCGCAAGTGGCGGACCACGCC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26296522 436 +  26524999 CTCCGCCTCACCTCTCCGCTCGGGTCCAGGCAGCCCATCGTGGGGATgcggccccctcggcgcctccccgcgcgcgccccgggcTCCGCCAGCTTCTCGCGCAGCCCCCGGCTGATGCGCACCTCCACCGCCAGCCGCACGTTGGACCTCAGGCTGCGGCGGGGACACGGCTGGCCGCAGCAGGGGCAggcggggggtggcgcggggaccccggcggcgggcggggcgccccagcggcgggccAGGCACGCGCGGCAGAAGCTGTGCTCGCACGCCAACAGCACCGGGTCCTCGAAGGGACCCCCGCACAGCGGGCACGTCGCCAGCTGCTCCAGACGCTCCACCAGCCCCGGGCCCAGCTCGGGCGCCTCCATGGGGAACGCGCGCCCGGGCGTCCGGCCTTCCGCGGCCTCC---------------CGCGCCCTGGGCGGCCCTCGCC
i canFam3.chr35            C 0 C 0
e manLeu1.NW_012107142v1     257100 544 -    735854 M

a score=73791.000000
s hg38.chr6_GL000254v2_alt  1419752 4 +   4827813 TGCT
s panTro5.chr6             30293007 4 + 175400573 TGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30523470 4 + 173848474 TGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     230574 4 +   2037526 TGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74903866 4 + 122973662 TGCT
i nomLeu3.chr1a            C 0 M 387
s rheMac8.chr4             30783054 4 + 172585720 TGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30072580 4 - 170955103 TGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     321890 4 +   1495729 TGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     419765 4 -    863181 TGCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29571853 4 -  71996105 TGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     257644 4 -    735854 TGCT
i manLeu1.NW_012107142v1   M 544 C 0
s colAng1.NW_012115577v1     209934 4 -   1829203 TGCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30382428 4 + 171630274 TGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           206112 4 +    515838 TGCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     837871 4 -   1771730 TGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     323676 4 -    383796 TGCT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               302569 4 + 123392446 TGCT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     106733 4 -   1411461 TGCT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           254328 4 +  18854210 GGCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58044252 4 -  94987271 CGCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26296958 4 +  26524999 TGCT
i canFam3.chr35            C 0 C 0

a score=3561334.000000
s hg38.chr6_GL000254v2_alt  1419756 263 +   4827813 GCTTGCTGTGTAGATGCCCTTCTCTCCGACTCCCGCATTAACT-TT-TGCCGCTT-TCCGCCCCTCTCCTGGGATTGCCTCTCTCTTCAACCAGAGTCTCAGTC--TCGTCAAATCTCTCCACCACATCAGGCTTTATAGGGAGGGAGGAGGCTC-CCACGGGAGGTAAACACCAGGCCTTGCGTAACGCCTCATCTGGTTCTCCTGCTTCCCGGGTAAGGTTTG-GGGGAGCA----GGGAGGGGA--------------GAATAGCACACCTGGTTCCCAGAGCCT
s panTro5.chr6             30293011 263 + 175400573 GCTTGCTGTGTAGATGCCCTTCTCTCCAACTCCCGCATTAACT-TT-TGCCGCTT-TCCGCCCCTCTCCTGGGATTGCCTCTCTCTTCAACCAGAGTCTCAGTC--TCGTCAAATCTCTCCACCACATCAGGCTTTATAGGGAGGGAGGAGGCTC-CCACGGGAGGTAAACACCAGGCCTTGCGTAACGCCTCATCTGGTTCTCCTGCTTCCCGGGTAAGGTTTG-GGGGAGCA----GGGAGGGGA--------------GAATAGCACACCTGGTTCCCAGAGCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30523474 263 + 173848474 GCTTGCTGTGTAGATGCCCTTCTCTCCGACTCCCGCATTAACT-TT-TGCCGCTT-TCCGCCCCTCTCCTGGGATTGCCTCTCTCTTCAACCAGAGTCTCAGTC--TCGTCAAATCTCTCCATCACATCAGGCTTTATAGGGAGGGAGGAGGCTC-CCACGGGAGGTAAACACCAGGCCTTGCGTAACGCCTCATCTGGTTCTCCTGCTTCCGGGGTAAGGTTTG-GGGGAGCA----GGGAGGGGA--------------GAATAGCACACCTGGTTCCCAGAGCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     230578 263 +   2037526 GCTTGCTGTGTAGATGCCCTTCTCTCCGACTCCCGCATTAACT-TT-TGCCGCTT-TCCGCCCCTCTCCTGGGATTGCCTCTCTCTTCAACCAGAGTCTCAGTC--TCGTCAAATCTCTCCACCACATCAGGCTTTATAGGGAGGGAGGAGGCTC-CCACGGGAGGTAAACAGCAGGCCTTGCGTAACGCCTCATCTGGTTCTCCTGCTTCCCGGGTAAGGGTTG-CGGGAGCA----GGGAGGGGA--------------GAATAGCTCACCTGGTTCCCAGAGCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30783058 263 + 172585720 GCTTGCTGTGTAGATGCCCTTCTCTCCGACTCCCGCATTAACT-TT-TGCAGCTT-TCCGCCCCTCTCCTGGGATTGCCTCTGTCTTCAACCAGAGTCTTAGTC--TCGGCAAATCTCTCCACGACATCAGGCTTTATAGGGAGGGAGGAGGCTC-CCACGGGAGGTAAACACCAGGCCTTGCGTAATGCCTCATCTGGTTCTCCCGCTTCCCGGGTAAGGTTTG-GGGGAGCA----GGGAGGGGA--------------GAATAGCACACCTGGGTCCCCGAGCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30072584 263 - 170955103 GCTTGCTGTGTAGATGCCCTTCTCTCCGACTCCCGCATTAACT-TT-TGCAGCTT-TCCGCCCCTCTCCTGGGATTGCCTCTGTCTTCAACCAGAGTCTTAGTC--TCGGCAAATCTCTCCACGACATCAGGCTTTATAGGGAGGGAGGAGGCTC-CCACGGGAGGTAAACACCAGGCCTTGCGTAATGCCTCATCTGGTTCTCCCGCTTCCCGGGTAAGGTTTG-GGGGAGCA----GGGAGGGGA--------------GAATAGCACACCTGGGTCCCCGAGCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     321894 263 +   1495729 GCTTGCTGTGTAGATGCCCTTCTCTCCGACTCCCGCATTAACT-TT-TGCAGCTT-TCCGCCCCTCTCCTGGGATTGCCTCTGTCTTCAACCAGAGTCTTAGTC--TCGGCAAATCTCTCCACGACATCAGGCTTTATAGGGAGGGAGGAGGCTC-CCACGGGAGGTAAACACCAGGCCTTGCGTAATGCCTCATCTGGTTCTCCCGCTTCCCGGGTAAGGTTTG-GGGGAGCA----GGGAGGGGA--------------GAATAGCACACCTGGGTCCCCGAGCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     419769 263 -    863181 GCTTGCTGTGTAGATGCCCTTCTCTCCGACTCCCGCATTAACT-TT-TGCCGCTT-TCCGCCCCTCTCCTGGGATTGCCTCTGTCTTCAACCAGAGTCTTAGTC--TCGGCAAATCTCTCCACGACATCAGGCTTTATAGGGAGGGAGGAGGCTC-CCACGGGAGGTAAACACCAGGCCTTGCGTAATGCCTCATCTGGTTCTCCCGCTTCCCGGGTAAGGTTTG-GGGGAGCA----GGGAGGGGA--------------GAATAGCACACCTGGGTCCCCGAGCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29571857 263 -  71996105 GCTTGCTGTGTAGATGCCCTTCTCTCCGACTCCCGCATTAACT-TT-TGCCGCTT-TCCGCCCCTCTCCTGGGATTGCCTCTGTCTTCAACCAGAGTCTTAGTC--TCGGCAAATCTCTCCACGACATCAGGCTTTATAGGGAGGGAGGAGGCTC-CCACGGGAGGTAAACACCAGGCCTTGCGTAATGCCTCATCTGGTTCTCCCGCTTCCCGGGTAAGGTTTG-GGGGAGCA----GGGAGGGGA--------------GAATAGCACACCTGGGTCCCCGAGCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     257648 263 -    735854 GCTTGCTGTGTAGATGCCCTTCTCTCCGACTCCCGCATTAACT-TT-TGCCGCTT-TCCGCCCCTCTCCTGGGATTGCCTCTGTCTTCAACCAGAGTCTTAGTC--TCGGCAAATCTCTCCACGACATCAGGCTTTATAGGGAGGGAGGAGGCTC-CCACGGGAGGTAAACACCAGGCCTTGCGTAATGCCTCATCTGGTTCTCCCGCTTCCCGGGTAAGGTTTG-GGGGAGCA----GGGAGGGGA--------------GAATAGCACACCTGGGTCCCCGAGCCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     209938 263 -   1829203 GCTTGCTGTGTAGATGCCCTTATCTCCGACTCCCGCATTAACT-TT-TGCCGCTT-TCCGCCCCTCCCCTGGGATTGCCTCTGTCTTCAACCAGAGTCTCAGTC--TCGGCAAATCTCTCCACGACATCAGGCTTTATAGGGAGGGAGGAGGCTC-CCACGGGAGGTAAACACCAGGCCTTGCGTAATGCCTCATCTGGTTCTCCCGCTTCCCCGGTAAGGTTTG-GGGGAGCA----GGGAGGGGA--------------AAATAGCACACCTGGGTCCCCGAGCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30382432 261 + 171630274 GCTTGCTGTGTAGATGCCCTTCTCTCCGACTCCCGCATTAACT-TT-TGCCGCTT-TCTGCCCCTCTCCTGGGATTGCCTCTCTCTTCAACC--AGTCTCAGTC--TCGGCCAATCTCTCCACCACATCAGGCTTTATAGGGAGGGAGGAGGCTC-CCACGGGAGGTAAACACTAGGTCTTGCGCAACGCCTCATCTGGTTCTCCTGCTTCCCGAGTAAGGTTTG-GGGGAGGA----GGAAGGGGA--------------AAATAGTACACCTGGGTCCCCGAGCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           206116 261 +    515838 GCTTGCTGTGTAGATGCCCTTCTCTCCGACTCCCGCATTAACT-TT-TGCCGCTT-TCCGCCCCTCTCCTGGGATTGCCTCTCTCTTCAACC--AGTCTCAGTC--TCGGCCAATCTCTCCACCACATCAGGCTTTATAGGGAGGGAGGAGGCTC-CCGCGGGAGGTAAACACCAGGTCTTGCGCAACGCCTCATCTGGTTCTCCCGCTTCCCGAGTAAGGTTTG-GGGGAGGA----GGGAGGGGA--------------GAATAGTACACCTGGGTCCCCGAGCCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     837875 261 -   1771730 GCTTGCTGTGTAGATGCCCTTCTCTCCGTCTCCCGCATTAACT-TT-TGCCGCTT-TCCGCCCCTCTTCTGGGATTGCCTCTCTCTTCAACC--AGTCTCAGTC--TCGGCCAATCTCTCTGCCACATCAGGCTTTATAGGGAAGGAGGAGGCTC-CTGCGGGAGGTAAACACCAGGTCTTGCGCAACGCCTCATCTGGTTCTCCCGCTTCCCGAGTAAGGTTTG-GGGGAGGA----GGGTGGGGA--------------GAATAGTACACCTGGGTCCCCGAGCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     323680 259 -    383796 GCTTGCTGTGTAGATGCCCTTCTCTCCGACTCCCGCATTAACT-TT-TGCCGCTT-TCCGCCCCTTTACTGGGATTGC--CTCTCTTCAACC--AGTCTCAGTC--TTGGCCAATCTCTCCGCCACATCAGGCTTTATAGGGAGGGAGGAGGCTC-CCGCGGGAGGTAAACACCAGGCCTTGCGCAACGCCTCATCTGGTTCTCCCGCTTCCCGAGTAAGGTTTG-GGGGAGGA----GGGAGGGAA--------------GAATAGCACACCTGGGTCCCCGAGCCT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               302573 261 + 123392446 GCTGGCGGAGTCGGTGCCCCTCTCTGCGTCTCCCGCATTAAGT-TT-TGCCGCTTTTCTG--CCCCTCCTGGGCCTGCCT--GTCTTCAGCCAGAGTCTCGGCCAGTGCGCGAATCTCCCCGGCACGGCGGGCTTTATAGGGAGGGCGGAGGCTC-CTGCAGGAGGTAAACATCAGGCCTTGCGTAACTCCTCGTCTGGTTCTCCCGCCTCCCGAGTGAGGTTTG-GGGGAGGA----GG-TGGGGA--------------GAAGAGGACACCTGGGTCCTGGAGCCC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     106737 264 -   1411461 GCTTGCGGAGTCGGTGCCCCTCTCTGCGTCTCCCGCATGAATT-TT-TGCCGCTTCTCTGCCCCCCTCCTGGGGCTGCCTC-GGTCTCAACCAGAGTCTCGATCTGTGCGCGAATCTCCCCACCACATCAGGCTTTATAGGGAGGGTGGAGGCTC-CTGCGGGAGGTAAACATCAGGCCTTGCGTAACGCCTCATCTGGTTCTCCCGCTTCCCGAGTGAGGTTTG-GGGGAGGA----GG-TGGGGA--------------GAAGAGGACACCTCGGTCCTGGAGCCT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           254332 265 +  18854210 GCTTGCTGAATCGGTGCCCCTCTCTGCGTCTCCCTCATTAAGT-TT-TGCCGCTTTTCTGCCCCTCTCCTGGGATTGCCTC-TTCCTCCACCAGAGTCTCAGTCTATCCGCGAATCTCCCCTCTACATCAGGCTTTATAGGGAGGGAGGAGGCTC-CTGCTGGAGGTAAACATCAGGCCTTGCGTAACACCTCATCTGGTTCTCCCGCTTGCCGAGTAAGGTTTGAAGGGGGGA----GA-TGGGGA--------------GAATAGGACACCTCCGTCATCAAGCCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58044256 259 -  94987271 GCGTGCTGACTTGACGCCCCTCGCTGCGCCTCCCTCATTCACT-TCGCACCTCCTATCTACCCCTCTCCCGGG-CTGCCTCGG---TTACCCAGA---TCGGAC--TCAGAGCGTCTCCTCACCACGTCAGGTTTTATAGGGAGGGAGGAGGCCCGGTGCAGGAGGTAAACAGCAGACCTTGCGTAATGCCTCATCTGGTTCTCCCGCTTCCCTAGTAGGGTTTG-GGGCAGCA----GGGTGTGAA--------------GACTGAGACACCTAGGTTCTAGAACCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26296962 277 +  26524999 GCTCGCCGGCTGGACGGCCCTCGCTGCGCCCGGCGCATTCACTGCC-TGACGCCC-TCCGGCGCCCTCCCGAGAAAGCCTGTGTCTCCCAGCAG---CTCGCTG--TCCACCGCCCTCCCGGCCGCATCGGGCTTTATAGGG--GGAGGAGGTCC-CTGAGGCAGGTAAACATCAGGTCTTGCGCAACCCCTCACCTGCTTCTCTGGCTTCCCTGCTGAGGTTTG-AAGGAGGGCGGCGGGTGGGGAATGGGGTGGAGGAGGGAGAGGACTTCTGGGGCCTGGAACCG
i canFam3.chr35            C 0 C 0
e nomLeu3.chr1a            74903870 387 + 122973662 M

a score=5403491.000000
s hg38.chr6_GL000254v2_alt  1420019 377 +   4827813 AGGAGGCGGTCACTAGAGGGCGCTCTG-GGG-CGGGGTAGCCCTGTGTGGGGAGGGTAGCCCCCT---GTGA------CCC-CCCGA----AGAGCCCCAATTTTACCTTCCCCTCCGCCTGTGGTA----CGCGC---ATGGGCCGGGTGCCCAGGCTCACTCTTGGCATGTGCGCCCACATTGCCAAGGTGCGAGTCATTCCAGGTGGCTGGCACACCTACATCTGGGGGCTGGGGG-CCGGAAGCACAGAT----CCTGGTTTGTGTGGCTTTGGCAAGCCTC-TGAGTGTTGATGTGTGGTTTTCATTCCTG--GTGCCTCTCGCCTTTCCATCTTCCTTCCTTACCTATTAAGGGCTTAAGG----GCATTCTGCAGCTCTGGGGTAAGGGGTGGGGAGCAGGCGCC
s panTro5.chr6             30293274 377 + 175400573 AGAAGGCGGTCACTAGAGGGCGCTCTG-GGG-CGGGGTAGCCCTGTGTGGGGAGGGTAGCCCCCT---GTGA------CCC-CCTGA----AGAGCCCCAATTTTACCTTCCCCTCCGCCTGTGGTA----CGCGC---ATGGGCCGGGTGCCCAGGCTCACTCTTGGCATGTGCGCCCACATTGCCAAGGTGTGAGTCATTCCAGGTGGCTGGCACACCTACATCTGGGGGCTGGGGG-CCGGAAGCACAGAT----CCTGGTTTGTGTGGCTTTGGCAAGCCTC-TGAGTGTTGATGTGTGGTTTTCACTCCCG--GTGCCTCTCGCCTTTCCATCTTCCTTCCTTACCTATTAAGGGCTTAAGG----GCATTCTGCAGCTCTGGGGTAAGGGGTGGGGAGCAGGCGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30523737 377 + 173848474 AGGAGGCAGTCACTAGAGGGCGCTCTT-GGG-CGGGGTAGCCCTGTGTGGGGAGGGTAGCCCCCT---GTGA------CCC-CCCGA----AGAGCCCCAATTTTACCTTCCCCTCCGCCTGTGGTA----CGCGC---ATGGGCCGGGTGCCCAGGCTCACTCTTGGCATGTGCGCCCACATTGCCAAGGTGTGCGTCATTCCAGGTGGCTGGCACACCTACATCTGGGGGCTGGGGG-CCGGAAGCACAGAT----CCTGGTTTGTGTGGCTTTGGCAAGCCTC-TGAGTGTTGATGTGTGGTTTTCATTCCCG--GTGCCTCTCGCCTTTCCATCTTCCTTCCTTACCTATTAAGGGCTTAAGG----GCATTCTGCAGCTCTGGGGTAAGGGGTGGGGAGCAGGCGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     230841 375 +   2037526 AGGAGGCGGTCACTAGAGGGCGCTCTG-GGG-CGGGGTAGCCCTGTGTGGGGAGGGTAGCCCCCT---GTGA------CCC-CCCGA----AGAGCCCCAATTTTACCTTCCCCTCCGCCTGTGGTA----CGCGC---ATGGGCCGGGTGCCCA-GCTCACTCTTGGCGTGTGCGCCCACATTGCCAAGGTGTGAGTCATTCCAGGTGGCTGGCACACCTACATCTCGGGGGCTGGGG-CCGGAAGCACAGAT----CCTGGTTTGTGTGGCTTTGGCAAGCCTC-TGAGTGTTGATGTGTGGTTTTCATTCCCG--GTGCCTCTCGCCTTTCCATCTTCCTTCCTTACCTATTAA-GGCTTAAGG----GCATTCTGCAGCTCTGGGGTAAGGGGTGGGGAGCAGGCGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74904257 370 + 122973662 AGGAGGCGGTCACTAGAGGGCGCTCTG-GGG-CGGGGTAGCCCTGTGTGGGGAGGGTAGCCCCCT---GTGA------CCC-CCCGA----AGAGCCCCAGTTTTACCTTCCCCTCCGCCTGTGGTA----CGCGC---ATGGGCCGGGTGCCCAGGCTCACTCTTGGCATGTGCGCCCACATTGCCAAGGTGTGAGTCATTCCAGGTGGCTGGCACACCTACATCTGGGGGCTGGGGG-CCGGAAGCACAGAT----CCTGGTTTGTGTGGCTTTGGCAAGCCTC-TGAGTGTTGATGTGTGGTTTTCATTCCCG--GTGCCTCTCGCCTTTCCATCTTCCTTCCTTACCTGTTAAGGGCTTAAGG----GCATTCTGCAGCTCTGGGGTAAGGGGTGGGGAGC-------
i nomLeu3.chr1a            M 387 C 0
s rheMac8.chr4             30783321 377 + 172585720 AGGAGGTGGTCACTAGAGGGCGGTCTG-GAG-CGGGGTAACCCTGTGTGGGGAGGGTAGCCCTCT---GTGA------ACC-CCCGA----AGAGCCCCAATTTTACCTTCCCCTCGGCCTGTGGTA----CGCGC---ATGGGCCGGGTGCCCAGACTCACTCTTGGCATGTGCGCCCACATTGCCAAGGTGTGATTCATTCCAGGTGGCTGGCACACCTACATCTGGGGGCTGGGGG-CCGGAAGTAGAGAT----CCTGGTTTGTGTGGCTTTGGCAAGCCTC-TGAGTGTTGATGTGTGGTTTTCATTCCCG--GTGCCTCTCGCCTTTCCATCTTCCTTCCTTACCTATTAAGGGCTTAAGG----GCACTCTGAAGTTCTGAAGTAAGGGGTGGGGAACAGGCACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30072847 377 - 170955103 AGGAGGTGGTCACTAGAGGGCGGTCTG-GAG-CGGGGTAACCCTGTGTGGGGAGGGTAGCCCTCT---GTGA------ACC-CCCGA----AGAGCCCCAATTTTACCTTCCCCTCGGCCTGTGGTA----CGCGC---ATGGGCCGGGTGCCCAGACTCACTCTTGGCATGTGCGCCCACATTGCCAAGGTGTGATTCATTCCAGGTGGCTGGCACACCTACATCTGGGGGCTGGGGG-CCGGAAGTAGAGAT----CCTGGTTTGTGTGGCTTTGGCAAGCCTC-TGAGTGTTGATGTGTGGTTTTCATTCCCG--GTGCCTCTCGCCTTTCCATCTTCCTTCCTTACCTATTAAGGGCTTAAGG----GCACTCTGAAGTTCTGAAGTAAGGGGTGGGGAACAGGCACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     322157 377 +   1495729 AGGAGGTGGTCACTAGAGGGCGGTCTG-GAG-CGGGGTCACCCTGTGTGGGGAGGGTAGCCCTCT---GTGA------ACC-CCCGA----AGAGCCCCAATTTTACCTTCCCCTCGGCCTGTGGTA----CGCGC---ATGGGCCGGGTGCCCAGACTCACTCTTGGCATGTGCGCCCACATTGCCAAGGTGTGATTCATTCCAGGTGGCTGGCACACCTACATCTGGGGGCTGGGGG-CCGGAAGTAGAGAT----CCTGGTTTGTGTGGCTTTGGCAAGCCTC-TGAGTGTTGATGTGTGGTTTTCATTCCCG--GTGCCTCTCGCCTTTCCATCTTCCTTCCTTACCTATTAAGGGCTTAAGG----GCACTCTGAAGTTCTGAAGTAAGGGGTGGGGAACAGGCACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     420032 378 -    863181 AGGAGATGGTCACTAGAGGGCGGTCTG-GAG-CGGGGTAACCCTGTGTGGGGAGGGTAGCCCTCT---GTGA------ACC-CCCGA----AGAGCCCCAATTTTACCTTCCCCTTGGCCTGTGGTA----CGCGC---ATGGGCCGGGTGCCCAGACTCACTCTTGGCATGTGCGCCCACATTGCCAAGGTGTGATTCATTCCAGGTGGCTGGCACACCTACATCTGGGGGCTGGGGG-CCGGAAGTAGAGAT----CCTGGTTTGTGTGGCTTTGGCAAGCCTCTTGAGTGTTGATGTGTGGTTTTCATTCCCG--GTGCCTCTCGCCTTTCCATCTTCCTTCCTTACCTATTAAGGGCTTAAGG----GCACTCTGAAGTTCTGGAGTAAGGGGTGGGGAACAGGCACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29572120 378 -  71996105 AGGAGGTGGTCACTAGAGGGCGGTCTG-GAG-CGGGGTAACCCTGTGTGGGGAGGATAGCCCCCT---GTGA------ACC-CCCGA----AGAGCCCCAATTTTACCTTCCCCTCGGCCTGTGGTA----CACGC---ATGGGCCGGGTGCCCAGACTCACTCTTGGCATGTGCGCCCACATTGCCAAGGTGTGATTCATTCCAGGTGGCTGGCACACCTACATCTGGGGGCTGGGGG-CCGGAAGTAGAGAT----CCTGGTTTGTATGGCTTTGGCAAGCCTCTTGAGTGTTGATGTGTGGTTTTCATTCCCG--GTGCCTCTCGCCTTTCCATCTTCCTTCCTTACCTATTAAGGGCTTAAGG----GCACTCTGAAGTTCTGGAGTAAGGGGTGGGGAACAGGCACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     257911 378 -    735854 AGGAGGTGGTCACTAGAGGGCGGTCTG-GAG-CGGGATAACCCTGTGTGGGGAGGGTAGCCTTCT---GTGA------ACC-CCCGA----AGAGCCCCAATTTTACCTTCCCCTTGGCCTGTGGTA----CGCGC---ATGGGCCGGGTGCCCAGACTCACTCTTGGCATGTGCGCCCACATTGCCAAGGTGTGATTCATTCCAGGTGGCTGGCACACCTACATCTGGGGGCTGGGGG-CCGGAAGTAGAGAT----CCTGGTTTGTGTGGCTTTGGCAAGCCTCTTGAGTGTTGATGTGTGGTTTTCATTCCCG--GTGCCTCTCGCCTTTCCATCTTCCTTCCTTACCTATTAAGGGCTTAAGG----GCACTCTGAAGTTCTGGAGTAAGGGGTGGGGAACAGGCACC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     210201 377 -   1829203 AGGAGGCGGTCACTAGAGGGCGGTCTG-GGG-CGGGGTAACCCTGTATGGGGAGGGTAGCCGCCT---GTGA------ACC-CCCGA----AGAGCCCCAATTTTACCTTCCCCTCAGCCTGTGGTA----CGCGC---ATGGGCCGGGTGCCCAGGCTCACTCTTGGCATGTGCGCCCACATTGCCAAGGTGTGATTCATTCCAAGTGGCTGGCACACCTACATCTGGGGGCTGGGGG-CCAGAAGTAAAGAT----CCTGGTTTGTGTGGCTTTGGCAAACCTC-TGAGTGTTGATGTGTGGTTTTCATTCCTG--GTGCCTCTCGCCTTTCCATCTTCTTTCCTTACCTATTAAGGGCTTAAGG----GCACTCTGAAGTTCTGGAGTAAGGGGTGGGGAACAGGCACC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30382693 369 + 171630274 AGGAGGCTGCCACTAGAGGGCGCTCTG-GGGGCGGGGTAGCCCTGTAGGGGGAGGGTAGCCCCCT---GTGA------CCC-CCCAC--CAAGAGCCCCAGTTTTACGTTAT-----GCATGTGGTG----CGCAC---ATGGGCCGGGTGCCCAGGCTCGCTCTTGGCATGTGCACCCACATTGCCAAGGTGTGAGTCATTCCAGGTGGCTGGCACACCTACCTCTGGGGGCTGGGGG-CCGGAAGCACAGAT----CCTGGTTTGCGTGGCTTTGGCAAGCCTC-TGAGTGTTGATGTGTGGTTGTCATTC--------CCTCTCGCCTTTCCGTCTTCCTTCCTTACCTATTAAGGGCTTAAGG----GCACTCTGAAGCTCTAGGGTAAGGGGTGGAGAGCAGGCGCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           206377 379 +    515838 AAGAGGCTGCCACTAGAAGGCGCTCCG-GGGACGGGGTAGCCCTGTAGGGGGAGGGTAGCCCCCT---GTGA---ACCCCC-CCCAA--CAAGAGCCCCAATTTTACTTTAT-----GCATGTGGTG----CGCGC---ATGGGCCGGGTGGCCAGGCTCGCTCTTGGCATGTGCGCCCACATTGCCAAGGTGTGAGTCATTCCAGGTGGCTGGCACACCTACCTCTGGGAGCTGGGGGCCCGGAAGCACAGAT----CCTGGTTTGTGTGGCTTTGGCAAGCCTC-TGAGTGTTGATGTGTGGTTGTCATTCCCG--GTGCCTCTCGCCTTTCCGTCTTCCTTCCTTACCTATTAAGGGCTTAAGG----GCACTCTGAAGCTCTAGGGTAAGGGGTGGGGAGCAGGCGCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     838136 377 -   1771730 AGGAGGCTGCCACTAGAGGGCGCTCTG-GGGGCGGGGTAGTCCTGTAGGGGGAGGGTAGCCCCCT---GTGA------CCC-CCCAACGCAAGAGCCCCAATTTTACTTTAT-----GCATGTGGTG----CGCGC---ATGGGCCGGGAGCCCAGGCTCGCTCTTGGCATGTGCGCCCACATTGCCAAGGTGTGAGTCATTCCAGGTGGCTGGCACGCCTACCTCTGGGAGCTGGGGG-CCGGAAGCACAGAT----CCTGGTTTGTGTGGCTTTGGCAAGCCTC-CGAGTGTTGATGTGTGGTTGTCATCCCCG--GTGCCTCTCGCCTTTCCGTCTTCCTTCCTTACCTATTAAGGGCTTAAGG----GCACTCTGAAGCTCTAGGGTAAGGGGTGGGGAGCAGGCGCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     323939 380 -    383796 AGGAGGCTGCCACTAGAGGGCGCTCTG-GGGGCGGGGTAGCCCTGTAGGGGGAGGGTAGCCCCCT---GTGACCCCCCCCC-CCCGC--CGAGAGCCCCAATTTTACCTTAT-----GCATGTGGTG----CGCGC---ATGGGCCGGTTACCCAGGCTCGCTCTTGGCATGTGCGCCCACATTGCCAAGGTGTGAGTCATTCCAGGTGGCTGGCACACCTACCTCTGGGGGCTGGGG--CCGGAAGCACAGAT----CCTGGTTTGTGTGGCTTTGGCAAGCCTC-TGAGTGTTGATGTGTGGTTGTCATTCCCG--GTGCCTCTCGCCTTTCCGTCTTCCTTCCTTACCTATTAAGGGCTTAAGG----GCACTCTGAAGCTCTAGGGTAAGGGGTGGGGAGCAGGCGCC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               302834 376 + 123392446 AGGAGGTGGTCACTAG-GGGCGCTCTGAGGG-CAAGGTAGCCCTGCGTGGG-AGGGTAGCCCCT-----GTA------CCC-CCTCG----AGAGCCCGAGTTTTACCTTCCGCTCGGCCTGTGGTG----TGCAG---GCGGGCAGAGTGCCCAGGCTCGCTCTTGGCGTGTGTGCCCGCATCGCTGGGGCGTGAGTCACTCCAGGTGGCTGGCGCACCCACATCTGAGGGCC--GGG-CTGGAAGCACGGGTCTTGCTTGGTTTGTGCGGCTTTGGCAAGCCTC--GAGTGTTGGTGTGTGGCTGTCATTCCCCC-GCGCTTCTCGCCCTTCCATCTTCCCTCCTTACCTATTAAGGGCTTAAGC----ATACTCTGAAGCTCTGGGGTGAGGGGCGGGGAGCAGGTGCC
i micMur3.chr6             C 0 I 135
s proCoq1.NW_012149775v1     107001 375 -   1411461 AGGAGGTGGTCACTAG-GGGCGCTCCG-GGG-CAAGGTAGCCCTGTGTGGG-AGGGTAGCCCCCT---GTTA------CTCGCCTGG----AGAGCCCGAGTTTTATCTTCCTCTCGGCCTGTGGTG----TGCAG---GCGGGCAGAGTGCCCAGGCTCGCTCTTGGCATGTGTGCCCACATCGCCAGGGTGTGAGTCACTCCAGGTGGCTGGCACACCTACATCTGAGGGCC--GGG-CAGGAAGCACAGAT----CCTAGTGTGCGCGGCTTTGGCAAGCCTC-TGAGTGTTGGTGTGTGGCTGTCATTCCCCCTGCGCCGAG-GCCTTTCCATCTTCCCTCCTTACCTATTAAGGGCTTAAGA----ACACTCTGAAGCTCTGGGGTAAGGGGCGGGGAGCAGGCGCC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           254597 378 +  18854210 AGAAGGTGGCAATTAGTGGGCGCTTTGGGGA-CAAAGTAGTCCTGTGTGGGAAGGGTAGCCCACT---ACTA------CTCCCTTCA----AGAACCCGAATTTTACCTTCCCCTAGGCCTGTGGTGTGCCTGCAG---GTGGGCAGAGTGCCCGGGCTCGCTCTTGGCATGCGTGCCCACATCGCCAGGGTGTGAGTCATTCCAGGTGGCTGGCACACCTAC-TCTGAGGGCTGGGGG-CCGGAAGCACGGAT----CCTGGTTCGTGTGGCTTTGGCAAGCCTT-TGAGTGTTGGTGTGCGGCTGTCATTCCTG--GAGCCTATTGCCTTTCCATCT----TCCTTACCTATTAAGGGCTTAAGT----ACACTCTGAAGCTTTGGGGTAAGGGCTGGGGAGCAGGCGCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58044515 376 -  94987271 AGGAGGTGAGCACCAGGGCATGCGCTGTGGG-CAAGGTAGCACTGT-TGGGTTTGGTAGCCCCCGTGAGTGA------GTC-CCTGA----AGAGCGTGAGT----CTCCCCCCTTGGCCTGCGGTG----TGCTTTTGGTGGGCAGGATGCCCAGGCTCGCTCTTGGCATGCGTGCTCACATTGCCAGGGCATGAGTCATCCCAGGTGGCTGGCACACCTACATCTGGGGGTTGGGGGCCCGGAAGCTTGGGT----CCTGGACTGTGTGGCTTTGGCAGGCCTC-TGAGTGTTGGCGTGTGGTTGTCACTCCTG--GCGCCTCTCTGCCTTCCATCTTCCTGCCTTGCCTATTAAGGTCT---GG----GGACACGCAAGCTTCTGGAGAAGAGCTGGA-AGCAGGCGCC
i mm10.chr17               C 0 I 2
s canFam3.chr35            26297239 296 +  26524999 -AGGGGTAGTAGGGAGGGGAAGCTCCT-GGG-GCACTAGGCCTGGTGTGCGGAGGGCAGCCCCCT---GTCC------TCC-CCTGG------------------------------GCCTGCCCTG----GGCCG---GTGGGCAGGGTGCCCTAGC-CGCTTGTGGTATGTGTGCCTGCATGGCCAGGGCGTGAGTCATCCCCAGCTGCTGGCACACCTATATCTGGAGGCT------------------------CCTGG-------------------CTCC-TGTCTGCTGTTGTCGGGGTGACACTCCTG----------------TCCATCGCCCTGCCTTACCTATTAAGGGCTGAGGAGCTCGCTCTCTGAGGCTGTGG-GCAAGGGGCGG--AGCAGGTG--
i canFam3.chr35            C 0 C 0

a score=2327313.000000
s hg38.chr6_GL000254v2_alt  1420396 201 +   4827813 CACACTTCGGCCTCAGGGAGTCGG----GGCAGAGCTCTTTCAGCTCTACCTCTGGCCAGC-TCCCAGGGCCTCTCC--TTACTTTCTTCGTAAGTCTCTCTTTCTGGTT----CTTTCTCTCTGTTTTTCCC--CGTGTGTG-ATTTTATTACCAGTTTTCTCTTTCCT---TCCTTCTTtgg-aatgtacccg-gt-attatctattt-caactctggta
s panTro5.chr6             30293651 201 + 175400573 CATACTCCGGCCTCAGGGAGTAGG----GGCAGAGCTCTTTCAGCTCTACTTCTGGCCAGC-TCCCGGGGCCTCTCC--TTACTTTCTTCGTAAGTCTCTCTTTCTGGTT----CTTTCTCTCTGTTTTTCCC--CGTGTGTG-ATTTTATTACCAGTTTTCTCTTTCCT---TCCTTCTTtgg-aatgtacccg-gt-attatctattt-caactctggta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30524114 201 + 173848474 CACACTCCGGCCTCAGGGAGTCGG----GGCACAGCTCTTTCAGCTCTACCTCTGGCCAGC-TCCCAGGGCCTCTCC--TTACTTTCTTCGTAAGTCTCTCTTTCTGGTT----CTTTCTCTCTGTTTTTCCC--CGTGTGTG-ATTTTATTACCAGTTTTCTCTTTCCT---TCCTTCTTtgg-aatgtacccg-gt-attatctattt-caactctggta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     231216 200 +   2037526 CACACTCCGGCCTCAGGGAGTCGG----GGCAGAGCTCTTTCAGCTCTACCTCTGGCCAGC-TCCCAGGGCCTCTCC--TTACTTTCTTCGTAAGTCTCTCTTTCTGGTT----CTTTCTCTCTGTTTTTCCC--CGTGTGTG-ATTTTATTACCAGTTTTCTCTTTCCT---TCCTTC-Ttgg-aatgtacccg-gt-attatctattt-caactctggta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74904627 184 + 122973662 ------------------AGCCGG----GGCAGAGCTCTCTCAGCTCTACCTCTGGCCAGCTTCTCAGGGCCTCTCC--TTACTTTCTTCCTAAGTCTCTCTTTCTGGTT----CTTTCTTTCTGTTTTTCCC--CGTGTGTG-ATTTTATTTCCAGTTTTCTCTTTCCT---TCCTTCTTTGG-AATGTAGCCG-GT-attatctattt-caactctggta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30783698 201 + 172585720 CACACTCCGGCCTCAGGGAGTCGG----GGCAGAGCTCTCGCAACTCTACCTCTGACCAGC-TCCCAGGGCCTCTCC--TTAATTTCTTCGTGAGtctctctttctggtt----ctttctctctgtttttccc--tgtgtatg-tttttatttccagttctctctttcct---tccttctttgg-aatgtacccg-gt-attatctattt-caactctggta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30073224 201 - 170955103 CACACTCCGGCCTCAGGGAGTCAG----GGCAGAGCTCTCGCAACTCTACCTCTGACCAGC-TCCCAGGGCCTCTCC--TTAATTTCTTCGTGAGtctctctttctggtt----ctttctctctgtttttccc--tgtgtatg-tttttatttccagttctctctttcct---tccttctttgg-aatgtacccg-gt-attatctattt-caactctggta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     322534 201 +   1495729 CACACTCCGGCCTCAGGGAGTCAG----GGCAGAGCTCTCGCAACTCTACCTCTGACCAGC-TCCCAGGGCCTCTCC--TTAATTTCTTCGTGAGtctctctttctggtt----ctttctctctgtttttccc--tgtgtatg-tttttatttccagttctctctttcct---tccttctttgg-aatgtacccg-gt-attatctattt-caactctggta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     420410 201 -    863181 CACACTCCGGCCTCAGGGAGTCGG----GGCAGAGCTCTTGCAACTCTACCTCTGGCCAGC-TCCCAGGGCCTCTCC--TTAATTTCTTCGTGAGtctctctttctggtt----ctttctctctgtttttccc--tgtgtgtg-tttttatttccagttctctctttcct---tccttctttgg-aatgtacccg-gt-attatctattt-caactctggta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29572498 201 -  71996105 CACACTCCGGCCTCAGGGAGTCGG----GGCAGAGCTCTCACAACTCTACCTCTGGCCAGC-TTCCAGGGCCTCTCC--TTAATTTCTTCGTGAGtctctctttctggtt----ctttctctctgtttttccc--tgtgtgtg-tttttatttccagttctctctttcct---tccttctttgg-aatgtacctg-gt-attatctattt-caactctggta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     258289 199 -    735854 CACACTCCGGCCTCAGGGAGTCGG----GGCAGAGCTCTCGCAACTCTACCTCTGGCCAGC-TCCCAGGGCCTCTCC--TTAATTTCTTCGTGAGtctctctttctggtt----ctttctctctgtttttccc----tgtgtg-tttttatttccagttctctctttcct---tccttctttgg-aatgtacccg-gt-attatctattt-caactctggta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     210578 200 -   1829203 CACACTCCGGCCTCAGGGAGTCCG----GGCAGAGCTCTGGCAACTCTACCTCTGGCCGGC-TCCCAGGGCCTCTCC--TTAATTTCTTCGTTAGtctctctttctggtt----ctttctctctgtttttccc--tgcgtgtg-tttttatttccagttctctctttcct---tccttcttt-G-AATGTACCCG-GT-attatctattt-caactctggta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30383062 198 + 171630274 CACACT-CGGCCTC--GGAGTCAG----AGCAGAGCTCTCTCTGCTCTAAGTCTGGCCAGC-TCCCAGGGCCTCTCC--TTACTTTCATTCTGGGTCTCTCTTTCTGATC----CTTTCTCTCTATTTTTCCC--TGTGTGTG-TTTTTATTTTCATTTTTATCTTTCCC---CGCTTCTTTGG-AATGTACCCA-GT-ATTCTCTATTT-CCATTCTGGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           206756 198 +    515838 CACACT-CGGCCTC--GGAGTCAG----AGCAGAGCTGTCTCCGCTCTACATCTGGCCAGC-TCCCAGGGGCTCtcc--ttactttcttcctgggtctctctttctgatc----ctttctctctatttttccc--tgtgtgtg-tttttattttcatttttatctttccc---tccttctttGG-AGTGTACCCG-GT-ATTCTCTGTTT-CCACTCTGGTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     838513 198 -   1771730 CACACT-CGGCCTC--GGAGTCAG----AGCAGAGCTCTCTCCGCTCTATGTCTGGCCAGC-TCCCAGGGGCTCTCC--TTACTTTCTTCCTGGGTCTCTCTTTCTGATC----CTTTCTCTCTATTTTTCCC--TGTGTGTG-TTTTTATTGTCATTTTTATCTTTTCC---TCCTTCTTTGG-AATGTACCCG-GT-ATTCTCTGTTT-CCACTCTGGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     324319 201 -    383796 CACACT-CGGCCTCAGGGAGTCAG----AGCAGAGCTCTCTCCACTCTACCTCTGGCCAGC-TCCCAAGGCCTCTCc--ttactttcttcctgggtctctctttctgatc----ctttctcactatttttccc--tgtgtgtg-tttttattttcatttttgtctttccc---tccttctttGGAAATGTGCCCG-GT-ATTCTCTATTT-CCACTCTGTTA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     107376 205 -   1411461 CACACTCCTGCCTCCAGGAGTCCA------GAGGGCTCTTGCAGCTCTCCCTCCGGCTAGC-TCCCAGGGCCCCTCC--TTACTTTCTTCCTAAGTCTCTCTTTCTGGTT----CTTTCCCTCT-CTTTCCCCCATGTGTGTGTTTTTTATTTCCATTTTTGTCTTTCCCTCCTCCTTCTTGGG-AGTGTACCCGAGG-AGTATCTATTT-CAACTGTCATG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           254975 210 +  18854210 CACGCTCTTGCCTCAAGGAGTAGATAGAGGTAGGGctctctcagctctacctctggctagc-tctca-cccctctca--ttactttcttcctaagtctctcttcctggct----ttttccctctatttttccctctgtgtgtg-tttttatttccttttttttttcctttctctccttcttCAG-AATGTACCCAAGG-ATTATCTATTT-CCACTCTCCTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58044893 179 -  94987271 CACACTCTTGCCTC------TCAA----CTTCAGGCTCTGCATCctctctctctctctctc-tct------ctctct--ct-ctctctctctctctctctctctctcGTTTCCATTTTCTCTATGCTTTTCCT--T---TGTG-TTTTTATTTTCAGCTTTCTTGTTCAC--------CTTTAC-TTTGTACCTG-ACAATTACTCATTT-CAACT------
i mm10.chr17               I 2 C 0
s canFam3.chr35            26297535 179 +  26524999 --TACTCCTGCCTGGCCCAGTGGG----GGCA-----------------CCTCTGGCTGGC-TCCCAGAGCCTCTCCTATTACTGTCTTCCCATGTCACTCTTTCTAGTC----CTTTCTCTCAGTTTTTCCT--GCTGTATG-TTCTCATCTCTA-------CTCTCTT---TCCTTCTTCTG-CCTGTTCCCAAGG-GTTATCTCTTTGCAAATCTCTTG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               303210 135 + 123392446 I

a score=2162021.000000
s hg38.chr6_GL000254v2_alt  1420597 161 +   4827813 gttcacagaggcccagagaactggaatagccaaggtcacatagcaagggaat-----gaccagaagtggagccctaccctgg---tc---ttctgacttgtgttcttgctgtgagtcaaccctgccTT-----------TTTCAGTTGCAGATCCCTGGGACCCCCTC-------CTGCTTCCTGA-TTTT
s panTro5.chr6             30293852 161 + 175400573 gttcacagaggcccagagaactggaatagccaaggtcacatagcaagggaat-----gaccagaagtggagccctaccctgg---tc---ttctgacttgtgttcttgctgtgactcaaccctgccTT-----------TTTCAGTTGCAGATCCCTGGGACCCCCTC-------CTGCTTCCTGA-TTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30524315 161 + 173848474 gttcacagaggcccagagaactggaatagccaaggtcacatagcaagggaat-----gaccagaagtggagccctaccctgg---tc---ttctgacttgtgttcttgctgtgactcaaccctgccTT-----------TTTCAGTTGCAGATCCCTGGGACCCCCTC-------CTGCTTCCTGA-TTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     231416 159 +   2037526 gttcacagaggcccagagaactggaatagccaaggtcacatagcaagggaat-----gaccagaagtggagccctaccctgg---tc---ttctgacttgtgttcttgctgtgactcaa-ccTGCCTT-----------TTTCAGTTGCAGATCCCTGGGACCCCCTC-------CTGCTTCCTGA--TTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74904811 161 + 122973662 gttcacagaggcccagagagctggaatagccaaggtcacatagcaagggaat-----gaccagaagtggagccctaccctgg---tc---ttctgacttgtgttcttgctgtgactcaaccctgccTT-----------TTTCAGCTGCAGATCCCTGGGACCCCCTC-------CTGCTTCTTGA-TTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30783899 160 + 172585720 gttcacagaggcccagagagttggaatagctaaggtcacatagcaagggaat-----gaccagaagtggagccctaccctgg---tc---ttctgacttgtgttcttgctgtgactcaaccctgccTT-----------TTTCAGTTACAGATCCCTGGGA-CCCCTC-------CTGCTTCCTGA-TATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30073425 160 - 170955103 gttcacagaggcccagagagttggaatagctaaggtcacatagcaagggaat-----gaccagaagtggagccctaccctgg---tc---ttctgacttgtgttcttgctgtgactcaaccctgccTT-----------TTTCAGTTACAGATCCCTGGGA-CCCCTC-------CTGCTTCCTGA-TATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     322735 160 +   1495729 gttcacagaggcccagagagttggaatagctaaggtcacatagcaagggaat-----gaccagaagtggagccctaccctgg---tc---ttctgacttgtgttcttgctgtgactcaaccctgccTT-----------TTTCAGTTACAGATCCCTGGGA-CCCCTC-------CTGCTTCCTGA-TATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     420611 160 -    863181 gttcacagaggctcagagagttggaatagccaaagtcacatagcaagggaat-----gaccagaagtggagccctaccctgg---tc---ttctgacttgtgttcttgctgtgattcaaccctgccTT-----------TTTCAGTTACAGATCCCTGGGA-CCCCTC-------CTGCTTCCTGA-TTTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29572699 160 -  71996105 gttcacagaggcccagagagttggaatagccaaggtcacatagcaagggaat-----gaccagaagtggagccctaccctgg---tc---ttctgacttgtgttcttgctgtgactcaaccctgccTT-----------TTTCAGTTACAGATCCCTGGGA-CCCCTC-------CTGCTTCCTGA-TATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     258488 160 -    735854 gttcacagaggcccagagagttggaatagccaaggtcacatagcaagggaat-----gaccagaagtggagccctaccctgg---tc---ttctgacttgtgttcttgctgtgactcaaccctgccTT-----------TTTCAGTTACAGATCCCTGGGA-CCCCTC-------CTGCTTCCTGA-TTTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     210778 160 -   1829203 gttcacagaggcccagagagttggaatagccaaggtcacatagcaagggaat-----gaccagaagtggagccctaccctgg---tc---ttctgacgtgtgttcttgctgtgactcaaccctgccTT-----------TTTCAGTTACAGATCCCTGGGA-CCCTTC-------TTGCTTCCTGA-TTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30383260 163 + 171630274 GTTCactgaggctcagggagctggaatagccgaggtcacatagtaagggaat-----gaccagaagtggag-tctaccctgg---tcttcttctgacttgtgctcttgctgtgactcaaccctgccTT-----------TTTCGCTGACAGATCTCTGGGACTCCCTC-------CTGGTTCCTAA-TTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           206954 163 +    515838 GTTCactgaggctcaaggagctggaatagccgaggtcacatagcaagggaat-----gaccagaagtggag-cctaccccag---tcttattctgacttgtgctcttgctgtgactcaaccctgcctt-----------tttCGCTGGCAGATCCCTGGGACTCCCTC-------CTGCTTCCTGA-TTTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     838711 164 -   1771730 GTTCactgaggctcaaggagctggaatagctgaggtcacatagcaagagagt-----gaccagaagtggag-cctacccctg---tcatcttctgacttgtgctcttgctgtgactcaaccctgccTT-----------TTTCGCTGGCAGATCCCTGGGACTCCTTC-------CCGCTTCCTGATTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     324520 164 -    383796 GTTCactgaggctcagggagctggaatagccgaggtcacatagcaagggaat-----gaccagaagtggag-cctaccctgg---tcttcttctgacttctgctcttgctgtgactcaaccctgccTT-----------TTTCGCTGGCAGATCCCTGGGACTCCCTC-------CTGCTTCCTGATTTTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               303345 164 + 123392446 GTTCactgaggcccagagagctggaattgccaaggtcgcatagctagggaat-----ggccagaagtggagccatacctagg---tc---ttctgacttgtccccttgctgtgacccaaccctgcctc--------tttTTTAAATTGCAGATCCCTGGAACTCCCTC-------CTGCTTTCTGA-TTTT
i micMur3.chr6             I 135 C 0
s proCoq1.NW_012149775v1     107581 167 -   1411461 GTTCactgaggcccagagagctggaattgccaaggtcacatagcaagggaat-----gaccagaagtggaaccatacctagatcttc---tTCTGACTTGTCCCCTTGCTGTGACCCGACCCTGCCTC--------TTTTTTTAATTGCAGATCCCTGGAACTCCCTC-------CTGCTTTCTGA-TTTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           255185 186 +  18854210 GTTTactgaggtaaaaaaagctggaattgccaaggtcacatagaaaggaaatgaccagaccagaagtggaggcatacatagatcttc---ttctgactTGTCCCCATACTGTGACTCAA-CCTGCCTCTTTTTTTTTTTTTTTCATTGTAGATCCCTGGAACTCTGTCCTGGTTTCTGCTTTCTGA-TTTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58045072  94 -  94987271 GATCTCAGAGGCCCAGAGA----------CCCAGATCAT----CAAGGGAAT-----CAA------------CTTACCCATT---TG----------------------------------------------------TTTAAGTGACAGATCCTGGGAGCtccctt-------ctgccttc--a-ttt-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26297714 156 +  26524999 GTGAACGGCAGTGCGGAGAGCTGGCATTGCCAAGCTCACACAGCAAGGGAAT-----AAGCAGCAGTGGAGCCCATCCCAGA---TC------TGATCTGAGCCCTTGCTGGGACTCTACCCTACCCG-----------TCTCATTT-CAGGTC-CTGGAACTCCCTT-------CTGCTTTCTTT-CTCT
i canFam3.chr35            C 0 I 3

a score=37305.000000
s hg38.chr6_GL000254v2_alt  1420758 3 +   4827813 TTT
s panTro5.chr6             30294013 3 + 175400573 TTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30524476 3 + 173848474 TTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     231575 3 +   2037526 TTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74904972 3 + 122973662 TTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784059 3 + 172585720 TTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30073585 3 - 170955103 TTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     322895 3 +   1495729 TTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     420771 3 -    863181 TTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29572859 3 -  71996105 TTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     258648 3 -    735854 TTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     210938 3 -   1829203 TTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30383423 3 + 171630274 TTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           207117 3 +    515838 TTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     838875 3 -   1771730 TTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     324684 3 -    383796 TTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               303509 3 + 123392446 TTT
i micMur3.chr6             C 0 I 228
s proCoq1.NW_012149775v1     107748 3 -   1411461 TTT
i proCoq1.NW_012149775v1   C 0 I 2
s otoGar3.GL873550           255371 2 +  18854210 TT-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58045166 0 -  94987271 C
e canFam3.chr35            26297870 3 +  26524999 I

a score=1583565.000000
s hg38.chr6_GL000254v2_alt  1420761 139 +   4827813 CTGGTGTTCCTTTGTGCCTTCATTCCTCACCTCCA--T-TCTCTCTTTTTCTCCTTACCTGCTCCTCTCCCCACC----TCTCCTCTTCCTCCCTGCTCCCTCCTCTTCCTAGCTTCTCTACCCTTCCAATGCCAGGCCTAGCTAA
s panTro5.chr6             30294016 140 + 175400573 CTGGTGTTCCTTGGTGCCTTCATTCCTCACCTCCA--TCTCTCTCTTTTTCTCCTTACCTGCTCCTCTCCCCACC----TCTCCTCTTCCTCCCTGCTCCCTCCTCTTCCTAGCTTCTCTACCCTTCCAATGCCAGGCCTAGCTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30524479 140 + 173848474 CTGGTGTTCCTTTGTGCCTTCATTCCTCACCTCCA--TCTCTCTCTTTTTCTCCTTACCTGCTCCTCTCCCCACC----TCTCCTCTTCCTCCCTGCTCCCTCCTCTTCCTAGCTTCTCTACCCTTCCAATGCCAGGCCTAGCTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     231578 140 +   2037526 CTGGTGTTCCTTTGTGCCTTCATTCCTCACCTCCA--TCTCTCTCTTTTTCTCCTTACCTGCTCCTCTCCCCACC----TCTCCTCTTCCTCCCTGCTCCCTCCTCTTCCTAGCTTCTCTACCCTTCCAATGCCAGGCCTAGCTAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74904975 140 + 122973662 CTGGTGTTCCTTTGTGCCTTCATTCGTCACCTCCA--TCTCTCTCTTTTTCTCTTTACCTGCTCCTCTCACCACC----TCTCCTCTTCCTCCCTGCTCCCTCCTCTTCCTAGCTTCTCTGCCCTTCCAATGCCAGGCCTAGCTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784062 136 + 172585720 CTGGTGTTCCTTTGTGccttcattcctcaccttca--tctctc----tttctccttacctgctcctctcccaacc----tctcttcttcctccctgctccctcctcttcctagcttctctacccttcCAATGCCAGGCCTAGCTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30073588 136 - 170955103 CTGGTGTTCCTTTGTGCCTTCATTCCTCACCTTCA--TCTCTC----TTTCTCCTTACCTGCTCCTCTCCCAACC----TCTCTTCTTCCTCCCTGCTCCCTCCTCTTCCTAGCTTCTCTACCCTTCCAATGCCAGGCCTAGCTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     322898 136 +   1495729 CTGGTGTTCCTTTGTGCCTTCATTCCTCACCTTCA--tctctc----tttctccttacctgctcctctcccaacc----tctcttctttctccctgctccctcCTCTTCCTAGCTTCTCTACCCTTCCAATGCCAGGCCTAGCTGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     420774 136 -    863181 CTGGTGTTCCTTTGTGCCTTCATTCCTCACCTTCA--TCTCTC----TTTCTCCTTACCTGCTCCTCTCCCAACC----TCTCTTCTTCCTCCCTGCTCCCTCCTCTTCCTAGCTTCTCTACCCTTCCAATGCCAGGCCTAGCTGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29572862 136 -  71996105 CTGGTGTTCCTTTGTGCCTTCATTCCTCACCTTCA--TCTCTC----TTTCTCCTTACCTGCTCCTCTCCCAACC----TCTTTTCTTCCTCCCTGCTCCCTCCTCTTCCTAGCTTCTCTACCCTTCCAATGCCAGGCCTAGCTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     258651 136 -    735854 CTGGTGTTCCTTTGTGCCTTCATTCCTCACCTTCA--TCTCTC----TTTCTCCTTACCTGCTCCTCTCCCAACC----TCTCTTCTTCCTCCCTGCTCCCTCCTCTTCCTAGCTTCTCTACCCTTCCAATGCCAGGCCTAACTGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     210941 136 -   1829203 CTGGTGTTCCTTTGTGCCTTCATTCCTCACCTCCA--TCtctc----tttctccttacctgctcctctcccaacc----tctcttcttcctccctgctccctcctcttcctagcttctctgcccttcCAATGCCAGGCCTAGCTGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30383426 139 + 171630274 CTGATGTTCCTTTGTGCcttcattcctcacttcta--tctctctctttttctccttacctgctcctctccccacc----tatcctcttcctctctgctcccacctcttcCTAGCTTCTCTACCCTTTCAGT-CCAGGTCTAGCTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           207120 140 +    515838 CTGATGTTCCTTTATACcttcattcctcacttcca--tctctctctttttctccttacctgctcctctctccacc----tatcctcttcctctctgctcccgcctcttcCTAGCTTCTTTACCCTTTCAATGCCAGGTCTAGCTGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     838878 140 -   1771730 CTGATGTTCCTTTGTGCCTTCATTCCTCACTTCCA--TCTCTGTCTTTTTTGCCTTACCTGCTCCTCTCCCCACC----TATCCTCTTCCTCTCTGCTCCTGTCTCTTCCTAGCTTCTCTACCCTTTCAGTGCCAGATCTAGCTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     324687 140 -    383796 CTGATGTTCCTTTGTGCCTTCATtcctcacttcca--tctctctctttttctccttacctgctcctctccccacc----tatcctcttcctctctgctcctgcctcttcctagcttctcTACCCTTTCAATGCCAGGTCTAGCTGA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     107753 124 -   1411461 CTGATGTTC-------CCTTCTTCCCTTGCCTCCAActctctctcttttactcctcctccgctcctcttc---------ccagctctcctctcttcctcccttctctTCCTTGCTCCTGCCCC------ATGCCAGGCCTTGCTAT
i proCoq1.NW_012149775v1   I 2 C 0
s otoGar3.GL873550           255373 130 +  18854210 CTGATGTTC-------TCTTCTTCCTTTGCCTCCA--TCTCACTCTTTtcctcctcctcctctcctcctcttcccctttccttctcttcctcccccctcccttctcttcctGGCTCCTCTCCC------ATACCAAGCC-TACTGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58045166 118 -  94987271 ctgatctttccttgttactccccaccccacctcta--tcaccatctcttccttct-------------------c----tcctctctttcttcctgttctctcctcttcctagctcccctttctctt---ttcctagcctttctGC
i mm10.chr17               C 0 C 0
e micMur3.chr6               303512 228 + 123392446 I
e canFam3.chr35            26297870   3 +  26524999 I

a score=219819.000000
s hg38.chr6_GL000254v2_alt  1420900 17 +   4827813 CTGGATACTCATGGGGG
s panTro5.chr6             30294156 17 + 175400573 CTGGATACTCATGGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30524619 17 + 173848474 CTGGATACTCATGGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     231718 17 +   2037526 CTGGATACTCATGGGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905115 17 + 122973662 CTGGATACTCATGGGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784198 17 + 172585720 CTGGATACTCATGGGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30073724 17 - 170955103 CTGGATACTCATGGGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323034 17 +   1495729 TTGGATACTCATGGGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     420910 17 -    863181 CTGGATACTCATGGGGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29572998 17 -  71996105 CTGGATACTCATGGGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     258787 17 -    735854 CTGGATACTCATGGGGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211077 17 -   1829203 CTGGATACTCATGGGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30383565 16 + 171630274 CTGGATACTCATGGG-G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           207260 16 +    515838 CTGGATACTCATGGG-C
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     839018 16 -   1771730 CTGGATACTCATGGG-G
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     324827 16 -    383796 CTGGATACTCATGGG-G
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     107877 17 -   1411461 CTGGGTATCCATGGGGG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           255503 17 +  18854210 CTGGATATCCATGGGGG
i otoGar3.GL873550         C 0 I 30
s mm10.chr17               58045284 17 -  94987271 CTGGATACATTTAGGAA
i mm10.chr17               C 0 C 0
s dasNov3.JH580105                1 16 -     45298 CCGGACACCCCTGGGG-
i dasNov3.JH580105         N 0 C 0
e micMur3.chr6               303512 228 + 123392446 I
e canFam3.chr35            26297870  3 +  26524999 I

a score=108218.000000
s hg38.chr6_GL000254v2_alt  1420917 12 +   4827813 TTTGTGCATAAG
s panTro5.chr6             30294173 12 + 175400573 TTTGTGCATAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30524636 12 + 173848474 TTTGTGCAGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     231735 12 +   2037526 TTTGTGCATAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905132 12 + 122973662 TTTGTGCATAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784215 12 + 172585720 TGTGCACGTAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30073741 12 - 170955103 TGTGCACGTAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323051 12 +   1495729 TGTGCACGTAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     420927 12 -    863181 TGTGCACATAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573015 12 -  71996105 TGTGCACATAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     258804 12 -    735854 TGTGCACATAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211094 12 -   1829203 TGTGCGCATAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30383581 12 + 171630274 TTTGTGCATAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           207276 12 +    515838 TTTGTGCATAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     839034 12 -   1771730 TTTGTGCATAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     324843 12 -    383796 TTTGTGCATAAG
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     107894 12 -   1411461 TTTGTGAGTGAG
i proCoq1.NW_012149775v1   C 0 C 0
s mm10.chr17               58045301 12 -  94987271 ATTCTGAAAAAG
i mm10.chr17               C 0 C 0
e micMur3.chr6               303512 228 + 123392446 I
e dasNov3.JH580105               17  0 -     45298 C
e canFam3.chr35            26297870  3 +  26524999 I
e otoGar3.GL873550           255520 30 +  18854210 I

a score=688208.000000
s hg38.chr6_GL000254v2_alt  1420929 60 +   4827813 TAAACATCCAGATGTCTACAACTATGATCACCCACACTGTTATATAACATGTGT---CTGCAT
s panTro5.chr6             30294185 60 + 175400573 TAAACATCCAGATGTCTACAACTATGATCACCCACACTGTTATATAACATGTGT---CTGCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30524648 60 + 173848474 TAAACATCCAGATGTCTACAACTATGATCACCCACACTGTTATATAACATGTGT---CTGCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     231747 60 +   2037526 TAAACATCCAGATGTCTACAACTATGATCACCCACACTGTTATATAACATGTGT---CTGCAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905144 60 + 122973662 TAAACATCCAGATGTCTACAACTATGATCACCCACACTGTTACATAACATGTGT---CTGCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784227 60 + 172585720 TAAACATCCGACTGTCTACAACTATGATCACTCACACTGTTATATAACATGTGT---CTGCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30073753 60 - 170955103 TAAACATCCGACTGTCTACAACTATGATCACTCACACTGTTATATAACATGTGT---CTGCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323063 60 +   1495729 TAAACATCCGACTGTCTACAACTATGATCACTCACACTGTTATATAACATGTGT---CTGCAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     420939 60 -    863181 TAAACATTCAGCTGTCTACAACTATGATCACTCACACTGTTATATAACATGTGT---CTGCAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573027 60 -  71996105 TAAACATCCAGCTGTCTACAACTATGATCACTCACACTGTTATATAACATGTGT---CTGCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     258816 60 -    735854 TAAACATTCAGCTGTCTACAACTATGATCACTCACACTGTTATATAACATGTGT---CTGCAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211106 60 -   1829203 TAGACATCCAGCTGTCTACAACTATGATCACTCACACTGTTATATAACATGTGT---CTGCAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30383593 58 + 171630274 TAAACATCCAGATGTCTACAACTATGATCACCCACA--GTTATATAACATGTGT---CTGCGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           207288 58 +    515838 TAAACATCCAGAAGTCTACAACTATGATCACTCACA--GTTATATAACATGTGT---CTGCAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     839046 57 -   1771730 CAAACAT-CAGATGTCTACAACTATGATCACCCACA--GTTATATAACATGTGT---CTGCAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     324855 58 -    383796 TAAACATCTAGATGTCTACAACTATGATCACCTACA--GTTATATAACATGTGT---CTGCAT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     107906 48 -   1411461 --------TAAACATCTACAGCTGTGATCACCCACACTGTTA---AATACTTGT---GTGCA-
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           255550 55 +  18854210 NNNACATCCAGCTGTCTACAGCTGTGATCACTCACACTGTT-----ACACATGT---TTGCAT
i otoGar3.GL873550         I 30 C 0
s mm10.chr17               58045313 51 -  94987271 -----CTCTGTTTGTCCCCATATGTGACCACAAACACTGTT-----GCATGTGTACCATGC--
i mm10.chr17               C 0 C 0
s dasNov3.JH580105               17 56 -     45298 CGGGCATGCAGGCGTCTACA-CCGCAATCACGCACACGGCTGC---AAACGTGT---GTGCAT
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               303512 228 + 123392446 I
e canFam3.chr35            26297870  3 +  26524999 I

a score=839883.000000
s hg38.chr6_GL000254v2_alt  1420989 72 +   4827813 CCATCAGTGTCCAAATGCCCAAATGTGCACAAACTTGCAGACAGAAGCATTCATGTAATACAAACATCACAG
s panTro5.chr6             30294245 72 + 175400573 CCATCAGTGTCCAAATGCCCAAATGTGCACAAACTTGCAGACAGAAGCATTCATGTAATACAAACATCACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30524708 72 + 173848474 CCATCAGTGTCCAAATGCCCAAATGTGCACAAACTTGCAGACAGAAGCATTCATGTAATACAAACATCACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     231807 72 +   2037526 CCATCAGTGTCCAAATGCCCAAATGTGCACAAACTTGCAGACAGAAGCATTCATGTAATACAAACATCACAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905204 72 + 122973662 CCATCAGTGTCCAAATGCCCAAATGTGCACAAACTTGCAGACAGAAGCATTCATGTAATACAAACATCACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784287 61 + 172585720 CCATCAATGTCCAGATGCCCAAA-----------TTGCAGACAGAAGCATTCACGTAATACAAACATCACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30073813 61 - 170955103 CCATCAATGTCCAGATGCCCAAA-----------TTGCAGACAGAAGCATTCACGTAATACAAACATCACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323123 61 +   1495729 CCATCAATGTCCAGATGCCCAAA-----------TTGCAGACAGAAGCATTCACGTAATACAAACATCACAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     420999 59 -    863181 CCATCAATGTCCAGATGCCCAAA-----------TTGCAGAC--AAGCATTCACGTAATACAAACATCACAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573087 61 -  71996105 CCATCAATGTCCAGATGCCCAAA-----------TTGCAGACAGAAGCATTCACGTAATACAAACATCACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     258876 59 -    735854 CCATCAATGTCCAGATGCCCAAA-----------TTGCAGACAGAAGCATTCAC--AATACAAACATCACAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211166 61 -   1829203 CCATCAATGTCCAAATGCCCAAA-----------TTGCAGACAGAAGCATTCACGTAATACAAACATCACAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30383651 72 + 171630274 CCATCAATGTCCAAATGCTCTAATGTGTCTAAACCTGCAGATGAAAGCACTCATGTAATACAAACACCACAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           207346 72 +    515838 CCATCAATGTCCAAATGTCCGGATATGTGTAAACCTGCAGATGAAAACACTCATGTAATACAAACACCACAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     839103 72 -   1771730 CCATCAATGTCCAAATGCCCAAATGTGCATAAACCTGCAGATGAAAGCACTCATGTAATACAAACACCACAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     324913 72 -    383796 CCATCAATGTCCAAATGCCCAAATGTGCGTAAACCTGCAGATGAAAGCACTCATGTAATACAAACACCACAG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               303740 72 + 123392446 CCATCAATGCCCAAATGCCCCAGTGTGCACAAACTTACACACAGACACACTCGTGTAATGCAAGCATCACAG
i micMur3.chr6             I 228 I 11
s proCoq1.NW_012149775v1     107954 72 -   1411461 CCATCAACGTCCAAATGCCCCAGTGTGCACACACTTACAGACAGATACGCTCGTATAATGCAAACATCACAG
i proCoq1.NW_012149775v1   C 0 I 7
s otoGar3.GL873550           255605 72 +  18854210 CCATCAATGTCCAAATGCCTAAATGTGCACAAATGAATACACAGATACACTCATATAATGCAAACATCACAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58045364 68 -  94987271 TCATTGGTGTCCCA---CTCCAGTACGCACAAGCCTATAGATAGATACACTCATACAGTACAGGCATTACA-
i mm10.chr17               C 0 C 0
s dasNov3.JH580105               73 68 -     45298 CCACCGACGTACCAGTGCCC--ACGTGTGGGAACTT--AGACAGATACACTCACTGAAAGCACATGTCTCAT
i dasNov3.JH580105         C 0 C 0
e canFam3.chr35            26297870  3 +  26524999 I

a score=104798.000000
s hg38.chr6_GL000254v2_alt  1421061 16 +   4827813 CTAAATATAATGTGTA--
s panTro5.chr6             30294317 16 + 175400573 CTAAATATAGTGTGTA--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30524780 16 + 173848474 CTAAATATAATGCGTA--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     231879 16 +   2037526 CTAAATATAATGTGTA--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905276 16 + 122973662 TTAAATATAATGTGTA--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784348 16 + 172585720 CTAAATATAATGTGTA--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30073874 16 - 170955103 CTAAATATAATGTGTA--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323184 16 +   1495729 CTAAATATAATGTGTA--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421058 16 -    863181 CTAAATATAATGTGTA--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573148 16 -  71996105 CTAAATATAATGTGTA--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     258935 16 -    735854 CTAAATATAATGTGTA--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211227 16 -   1829203 CTAAATATAATGTGTA--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30383723 16 + 171630274 ATATATATCCTGTGTA--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           207418 16 +    515838 ATATATATCCTGTGTA--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     839175 16 -   1771730 ATATATATCCTGTGTA--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     324985 16 -    383796 ACATATATCCTGTGTA--
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           255677  7 +  18854210 ----ATACAGC-------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58045432  8 -  94987271 ---AACATATC-------
i mm10.chr17               C 0 C 0
s dasNov3.JH580105              141  7 -     45298 -----------GTGCGCC
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               303812 11 + 123392446 I
e proCoq1.NW_012149775v1     108026  7 -   1411461 I
e canFam3.chr35            26297870  3 +  26524999 I

a score=56557.000000
s hg38.chr6_GL000254v2_alt  1421077 4 +   4827813 TGAA
s panTro5.chr6             30294333 4 + 175400573 TGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30524796 4 + 173848474 TGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     231895 4 +   2037526 TGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905292 4 + 122973662 TGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784364 4 + 172585720 TGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30073890 4 - 170955103 TGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323200 4 +   1495729 TGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421074 4 -    863181 TGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573164 4 -  71996105 TGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     258951 4 -    735854 TGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211243 4 -   1829203 TGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30383739 4 + 171630274 TGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           207434 4 +    515838 TGAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     839191 4 -   1771730 TGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     325001 4 -    383796 TGAA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     108033 4 -   1411461 TCAA
i proCoq1.NW_012149775v1   I 7 C 0
s otoGar3.GL873550           255684 4 +  18854210 TGAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58045440 4 -  94987271 TCAG
i mm10.chr17               C 0 C 0
s dasNov3.JH580105              148 4 -     45298 TGCA
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               303812 11 + 123392446 I
e canFam3.chr35            26297870 3 +  26524999 I

a score=2550220.000000
s hg38.chr6_GL000254v2_alt  1421081 180 +   4827813 TAGCCTCATATGCATTGAATATCACTGGGATAAATGTCCAGTATTATTTAGGAAC-----------------------------------------------AGACGGACATGCTCAAAGAAAACAGGCAAAGAGACAGATACTCTATCATCAGTTTTATTATTAATAAGAATAACAGTATAACAGCAGTAAGTCTTT-ATGGAGCAGCAGGACTTTATTAGGCACCC
s panTro5.chr6             30294337 180 + 175400573 TAGCCTCATATGCATTGAATATCACTGGGATAAATGTCCAGTATTATTTCGGAAC-----------------------------------------------AGATGGACATGCTCAAAGAAAACAGGCAAAGAGACAGATACTCTATCATCAGTTTTATTATTAATAAGAACAACAGTATAACAGCAGTAAGTCTTT-ATGCAGCAGCAGGACTTTATTAGGCACCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30524800 180 + 173848474 TAGCCTCATATGCATTGAATATCACTGGGATAAATGTCCAGTATTATTTCGGAAC-----------------------------------------------AGATGGACATGCTCAAAGAAAACAGGCAAAGAGACAGATACTCTATCATCAGTTTTATTATTAATAAGAACAACAGTATAACAGCAGTAAGTCTTT-ATGCAGCAGCAGGACTTTATTAGGCACCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     231899 180 +   2037526 TAGCCTCATATGCATTGAATATCACTGGGATAAATGTCCAGTATTATTTAGGAAC-----------------------------------------------AGATGGACATGCTCAAAGAAAACAGGCAAAGAGACAGATACTCTATCATCAGTTTTATTATTAATAAGAACAACAGTATAACAGCAGTAAGTCTTT-ATGGAGCAGCAGGACTTTATTAGGCACCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905296 180 + 122973662 TAGCCTCATACGCATTGAATATCACTGGGATAAATATCCAGTATTATTTAGGAAC-----------------------------------------------AGATGGACATGCTCAAAGAAAACAGGCAAAGAGACAGATACTCTATCATCAGTTTTATTATTAATAACAACAACTGTATAACAGCAGTAAGTCTTT-ATGTAGCAGCAGAACTTTATTAGGCACCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784368 179 + 172585720 TAGCCTCATACACATTGAATATCACTGGGATAAATGTTCAGTATTATTTAGGAAC-----------------------------------------------AGATGGACATGCTCAAAGAAAACAGGCAAAGAGACAGATACTCTATCATTAGTTTTATTATTAA-AAGAACAAGAGTATAACAGCATGAAGTCTTT-ATGGAGCAGCAGGACTTTATTAGGCACCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30073894 179 - 170955103 TAGCCTCATACACATTGAATATCACTGGGATAAATGTTCAGTATTATTTAGGAAC-----------------------------------------------AGATGGACATGCTCAAAGAAAACAGGCAAAGAGACAGATACTCTATCATTAGTTTTATTATTAA-AAGAACAAGAGTATAACAGCATGAAGTCTTT-ATGGAGCAGCAGGACTTTATTAGGCACCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323204 179 +   1495729 TAGCCTCATACACATTGAATATCACTGGGATAAATGTTCAGTATTATTTAGGAAC-----------------------------------------------AGATGGACATGCTCAGAGAAAACAGGCAAAGAGACAGATACTCTATCATTAGTTTTATTATTAA-AAGAACAAGAGTATAACAGCATGAAGTCTTT-ATGGAGCAGCAGGACTTTATTAGGCACCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421078 179 -    863181 TAGCCTCATACACATTGAATATCACTGGGATAAATGTTCAGTACTATTTAGGAAC-----------------------------------------------AGATGGACATGCTCAAAGAAAACAGGCAAAGAGACAGATACTCTATCATTAGTTTTATTATTAA-AAGAACAAGAGTATAACAGCAGTAAGTCTTT-ATGGAACAGCAGGACTTTATTAGGCACCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573168 179 -  71996105 TAGCCTCATACACATTGAATATCACTGGGATAAATGTTCAGTATTATTTAGGAAC-----------------------------------------------AGATGGACATGCTCAAAGAAAACAGGCAAAGAGACAGATACTCTATCATTAGTTTTATTATTAA-AAGAACAAGAGTATAACAGCAGTAAGTCTTT-ATGGAGCAGCAGGACTTTATTAGGCACCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     258955 180 -    735854 TAGCCTCATAAACATTGAATATCACTGGGATAAATGTTCAGTATTATTTAGGAAC-----------------------------------------------AGATGGACATGCTCAAAGAAAACAGGCAAAGAGACAGATACTCTATCATTAGTTTTATTATGAATAAGAACAAGAGTATAACAGCAGTAAGTCTTT-ATGGAGCAGCAGGACTTTATTAGGCACCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211247 179 -   1829203 TAGCCTCATACACATTGAATATCACTGGGATAAATGTCCAGTATTATTTAGGAAC-----------------------------------------------AGATGGACATGCTCAAAGAAAACAGGCAAAGAGACAGATACTCTATCATTAGTTTTATTATTAA-AAGAACAAGAGTATAACAGCAGTAAGTCTTT-ATGGAGCAGCAGGACTTTATTAGGCACCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30383743 179 + 171630274 TAGCCTCATACACATCGTCTATCACTGGGATAAATGTCCAGTGTTATTTAGGAAC-----------------------------------------------AGATGGACATGCTCAAAGAAAACAGACAAAGAGGCAGATACTCTATCATTAGTTTTCTTATTAATAAGAACAACAGTGTAACAGCAGTAAGTCTTT-ATGGAGCAGCAGGACTTCATTAGACA-CC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           207438 180 +    515838 TAGCCTCATACACACCGAATATCCCTGGGATAAATGTCCAGTGTTATTTAGGAAC-----------------------------------------------AGATGGACATGCTCAAAGAAAACAGGCAAAGAGGCAGATACTCTGTCATTAGTTTTGTTATTAATAAGAACAACAGTATAACAGCAGTAAGTCTTT-ATGGAGCAGCAGGACTTCATTAGGCACCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     839195 225 -   1771730 TAGCCTCATACACACCAAATATCACTGCGATAAATGTCCAGTGTTATTTAGGAACAGATGGACATGCAAAGACAGACATGCTCAAAGATGGACATGCTCATTAGATGGACATGCTCAAAGAAAACAGGCAAAGAGGCAGATA--CTATCATTAGTTTTGTTATTAATAAGAACAACAGTATAACAACAGTAAGTCTTT-ATGGAGCAGCAGGACTTCATTAGACACCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     325005 180 -    383796 TAGCTTCGTACACATCGAATATCGCTGGGATAAATGTCCAGTGTTATTTAGGAAC-----------------------------------------------AGATGGACATGCTCAAAGAAAACAGGCAAAGAGGCAAATACTCTATCATTAGTTTTGTTATTAATAAGAACAACGGTATAATAGCAGTAAGTCTTT-ATGGAGCAGCAGGACTTCATTAGGCACCC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               303823 177 + 123392446 TAGTCTCATATGCATTAAATATCACTGAGAGAGACATCCAGTATTATTTAAGAAC-----------------------------------------------AGATGGACATGCTCAAAGAAAACATACAAAGAGAC----ATTGTGTCATTAGTTTTATAGTTAGTAAGAACAACAACACAGCAGCAGCCAGGCTTTGATGGAGCAGCAGGACTTTATTAGACACCT
i micMur3.chr6             I 11 C 0
s proCoq1.NW_012149775v1     108037 177 -   1411461 TAGTCTCACACACATTAAATATCACTGGGAGAGACATCCAGTATTATTTAAGAAC-----------------------------------------------AGATGGACATGCTCAAAGAAAACATACAAAGAGAC----ACTGTGTCATTAGTTTTATAGTCAATAAGAACAACAATACAACAGCAGCGAGGCTTTAGTGGAGCAGCAGGACTTTATTAGGCACCT
i proCoq1.NW_012149775v1   C 0 I 7
s otoGar3.GL873550           255688 176 +  18854210 TAGTCTAATACACATTAAATATCACTGGGGTGGACATCCAGTATTATTTAGGAAC-----------------------------------------------AGATGGACATGCTCAAAGAAAACATGCAAAAAGAC----ACTCTGTCATTAGTTTTATTATCAATAAGAACAACAATACAACAGCAGTAAGTCTTT-ATGGAGCACCAGGACTTTATTAGGCATCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58045444 156 -  94987271 TAGTCTCATA-ACATTGTGCATCAGGAGG--------------TTGTTGAGGGAC-----------------------------------------------AGATGAACA--CTCAACCAAAATAACCAGAGAGGA----ACCTTGTCATTAGTTTTATTGTTGATGATAATAACAAAACAA-GGCAT--GGGCTTT-ACAGAGCAGCAGCACTTTATTGGGCACCC
i mm10.chr17               C 0 C 0
s dasNov3.JH580105              152 163 -     45298 CGGCCCCGTACACATGGACTGTCAC-GGGACGGATTCCCGGTAGTGTATAAGGAC-----------------------------------------------AGGTGGACAGGCTCAGAGAAAACAGGCAG----------GCACTGACAAGAGCTTTGCTGTCAGTAAGAACACG---GCAACCCCAGAAGGTCTGC-ACCAAGCAGCGGCGCTT-AGTAGGCTT--
i dasNov3.JH580105         C 0 C 0
e canFam3.chr35            26297870   3 +  26524999 I

a score=239482.000000
s hg38.chr6_GL000254v2_alt  1421261 21 +   4827813 CCTCCAGGCACTCTTCTTCTG
s panTro5.chr6             30294517 21 + 175400573 CCTCCAGGCACTCTTCTTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30524980 21 + 173848474 CCTCCAGGCACTCTTCTTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232079 21 +   2037526 CCTCCAGGCACCCTTCTTCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905476 21 + 122973662 TCTCCAGGCACCCTTCTTCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784547 21 + 172585720 CCTCCAGGCACCCTTCTTCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074073 21 - 170955103 CCTCCAGGCACCCTTCTTCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323383 21 +   1495729 CCTCCAGGCACCCTTCTTCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421257 21 -    863181 CCTCCAGGCACCCTTCTTCCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573347 21 -  71996105 CCTCCAGGCACCCTTCTTCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259135 21 -    735854 CCTCCAGGCACCCTTCTTCCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211426 21 -   1829203 CCTCCAGGCACCCTTCTTCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30383922 21 + 171630274 CCTCCAGGCACCCTTCTTCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           207618 21 +    515838 CCTCCAGGCACCCTTCTTCTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     839420 21 -   1771730 CCTCCAGGCACCCTTCTTCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     325185 21 -    383796 CCTCCAGGCACCCTTCTTCCT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               304000  7 + 123392446 -------------GTCTTCC-
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           255864 20 +  18854210 CCTCCAGGCACTCATCTTCC-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58045600 18 -  94987271 CTTCCAGGCACCCTTCTT---
i mm10.chr17               C 0 C 0
s dasNov3.JH580105              315 14 -     45298 CCTGCAGGCTCCTA-------
i dasNov3.JH580105         C 0 C 0
e proCoq1.NW_012149775v1     108214  7 -   1411461 I
e canFam3.chr35            26297870  3 +  26524999 I

a score=1119730.000000
s hg38.chr6_GL000254v2_alt  1421282 71 +   4827813 CCTCCCCCATACTT-ATTGGG--GAGACACTCAAATATGACACCCTGATAAACAAACCTACACAAACAAACACA
s panTro5.chr6             30294538 71 + 175400573 CCTCCCCCATACTT-ATCAGG--GAGACACTCAAATATGACACCCTGATAAACAAACCTACACAAACAAACACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525001 71 + 173848474 CCTCCCCCATACTT-ATCAGG--GAGACACTCAAATATGACACCCTGATAAACAAACCTACACAAACAAACACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232100 71 +   2037526 CCTCCCCCATACTT-ATCAGG--GAGACACTCAAATATGACACCCTGATAAACAAACCTACACAAACAAACACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905497 71 + 122973662 CCTCCCCCATACTT-ATCAGG--GAGACACTCAAATATGACACCCTGATAAACAAACCTACACAAACAAACACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784568 67 + 172585720 CCTCCCCCATACTT-ATCAGG--GAGACACTCAAATATGACACCCTGAT----AAACCTACACAAACAAACACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074094 67 - 170955103 CCTCCCCCATACTT-ATCAGG--GAGACACTCAAATATGACACCCTGAT----AAACCTACACAAACAAACACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323404 67 +   1495729 CCTCCCCCATACTT-ATCAGG--GAGACACTCAAATATGACACCCTGAT----AAACCTACACAAACAAACACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421278 67 -    863181 CCTCCCCCATACTT-ACCAGG--GAGACACTCAAATATGACACCCTGAT----AAACCTACACAAACACACACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573368 67 -  71996105 CCTCCCCCATACTT-ATCAGG--GAGACACTCAAATATGACACCCTGAT----AAACCTACACAAACAAACACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259156 67 -    735854 CCTCCCCCATACTT-ATCAGG--GAGACACTCAAATATGACACCCTGAT----AAACCTACACAAACAAACACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211447 67 -   1829203 CCTCCCCCATACTT-ATCAGG--GAAACACTCAAATATGACACCCTGAT----AAACCTACACAAACAAACACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30383943 71 + 171630274 CCTCCCTCATACTT-ATCAGG--GAGACACTCAAATATGACACCCTGATAAACAAACCTGCACAGACAAACACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           207639 71 +    515838 CCTCCCTCATACTT-ATGAGG--GAGACACTCAAATATGATACCCCGATAAACAAACCTGCACAAACAAACACA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     839441 71 -   1771730 CCTCCCTCATACTT-ATCAGG--GAGACACTCAAATATGACACCCCGATAAACAAACCTGCACAAACAAATACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     325206 70 -    383796 CCTCCCTCATACTT-ATCAGG--GAGACACTCAAATATGACACCCTGA-AAACAAACCTGCACAAACAAACACA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               304007 71 + 123392446 CTTCCCCCATACTT-ATCAGG--GAGACACTCAAAAATGACACCCTGATAAACAAACCTATTGGAACAAACACA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     108221 71 -   1411461 CTTCCTCCATACTT-TTCAGG--GAGACACTCAAAAATGACACCCTGATAAACAAACCTACTAGAACAAACACA
i proCoq1.NW_012149775v1   I 7 C 0
s otoGar3.GL873550           255884 71 +  18854210 CACCTCCCATATTT-ATCAAA--GAGATGCTCAAAAATAACACCCTGATAAACAAACCTCCTAGGACAAACACA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58045618 71 -  94987271 CCTCCCCCACAGTT-ACTAGA--GAGGTACTCAAATGTGACACCATGATAAACAAACCTCCACAAACAAACACA
i mm10.chr17               C 0 I 141
s canFam3.chr35            26297873 69 +  26524999 CATCCCCACTACCT-GCACGTCCTTGACACTCAAACTGGACACCCTGAT----AAATCTACACAAACACGCATG
i canFam3.chr35            I 3 I 4
s dasNov3.JH580105              329 71 -     45298 CCACCCCCACCCCTCATCAGG--CAGACACTCAGGTACGACACCCTGAT-AACTGAGCTGCACAAACACAAACA
i dasNov3.JH580105         C 0 C 0

a score=109635.000000
s hg38.chr6_GL000254v2_alt  1421353 9 +   4827813 CGTACATTC
s panTro5.chr6             30294609 9 + 175400573 CGTACATTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525072 9 + 173848474 CGTACATTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232171 9 +   2037526 CGTACATTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905568 9 + 122973662 CATACATTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784635 9 + 172585720 CGTACATTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074161 9 - 170955103 CGTACATTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323471 9 +   1495729 CGTACATTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421345 9 -    863181 CGTACATTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573435 9 -  71996105 TGTACATTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259223 9 -    735854 CGTACATTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211514 9 -   1829203 TGTACATTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30384014 9 + 171630274 CAGACATTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           207710 9 +    515838 GGTACATTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     839512 9 -   1771730 AGTACATTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     325276 9 -    383796 CGTGCATTC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               304078 9 + 123392446 AGTATATTC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     108292 9 -   1411461 AGTACAATC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           255955 9 +  18854210 TGTACATTC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26297946 8 +  26524999 TGCGTATT-
i canFam3.chr35            I 4 C 0
s dasNov3.JH580105              400 5 -     45298 ----CATGC
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58045689 141 -  94987271 I

a score=1371525.000000
s hg38.chr6_GL000254v2_alt  1421362 90 +   4827813 ATCTTGGAACAACCCTCCCGGCTCAGTGCTCATAAAACACACAGATACCCAAGCATAAGACTACAGTTGTGACTGAAATCTATTTTGTAA
s panTro5.chr6             30294618 90 + 175400573 ATCTTGGAACAACCCTCCCAGCTCAGTGCTCATAAAACACACAGATACCCAAGCATAAGACTACAGTTGTGACTGAAATCTATTTTGTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525081 90 + 173848474 ATCTTGGAACAACCCTCCCAGCTCAGTGCTCATAAAACACACAGATACCCAAGCATAAGACTACAGTTGTGACTGAAATCTATTTTGTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232180 90 +   2037526 ATCTTGGAACAACCCTCCCAGCTCAGTGCTCATAAAACACACAGATACCCAAGCATAAGACTACAGTTGTGACTGAAATCTATTTTGTAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905577 90 + 122973662 ATCTTGGAACAACCCTCCCAGCTCAGTGCTCATAAAACACACAGATACCCAAACATAAGACTACGGTTGTGACTGAAATCTATTTTGTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784644 90 + 172585720 ATCTTGGAACAACCCTCCCAGCTCAGTGCTCATAAAACACACAGAAATCCAAGCGTAAGACTACAGTTGTGACTACAATCTATTTTGTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074170 90 - 170955103 ATCTTGGAACAACCCTCCCAGCTCAGTGCTCATAAAACACACAGAAATCCAAGCATAAGACTACAGTTGTGACTGCAATCTATTTTGTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323480 90 +   1495729 ATCTTGGAACAACCCTCCCAGCTCAGTGCTCATAAAACACACAGAAATCCAAGCATAAGACTACAGTTGTGACTGCAATCTATTTTGTAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421354 90 -    863181 ATCTTGGAACAACCCTCCCAGCTCCGTGCTCATAAAACACACAGAAATCCAAGCATAAGACTACAGTTGTGACTGCAATCTATTTTGTAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573444 90 -  71996105 ATCTTGGAACAACCCTCCCAGCTCAGTGCTCATAAAACACACAGAAATCCAAGCATAAGACTGCAGTTGTGACTGCAATCTATTTTGTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259232 90 -    735854 ATCTTGGAACAACCCTCCCAGCTCAGTGCTCATAAAACACACAGAAATCCAAGCATAAGACTACAGTTGTGACTGCAATCTATTTTGTAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211523 90 -   1829203 ATCTTGGAACAACCCTCCCAGCTCAGTGCTCATAAAACACACAGAAATCCAAGCATAAGACTACAGTCGTGACTGCAATCTATTTTGTAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30384023 88 + 171630274 ATCTTGGAACAGCCCTTCCAGCTCAGTGCCCATAAAACACACAGATACCCAAGCATAAGAC--TAGTTATGACTGAAATCTATTTTGTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           207719 90 +    515838 ATCTTGGGACAGCCCTTCCAGCTCAGTGCTCATAAAGCGCACAGATACCCAAGCATAAGACTATAGTTATGACCAAAATCTATTTTgtaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     839521 90 -   1771730 ATCTTGGAACAGCCCTTCCAGCTCAGTGCTCATAAAACACACAGATACCCAAGCATAAGACTACAGTTATGACTGAAATCTATTTTgtaa
i cebCap1.NW_016107755v1   C 0 I 216
s aotNan1.NW_018496904v1     325285 87 -    383796 ATCTTG---CAACCCTTCCAGCTCAGTGCTCATAAAACACACAGATACCCAAGCATAAGACTACAGTTATGACTGAAATCTATTTTgtaa
i aotNan1.NW_018496904v1   C 0 I 216
s micMur3.chr6               304087 90 + 123392446 ATCTTGGAACTACCCTCCCTGGTCACTGCTCATAAAACACACAGATACCCAAGCAAAAGACTAAATATATTACTAAAATCTGTTTTGTAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     108301 90 -   1411461 ATCTTGGAACGACTCTCCCAGTTCAGTGCTCATAAAACACACCAATACCCAAGCAAAAGACTACAGATATGACTGAAATCTGTTTTGTAA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           255964 90 +  18854210 ATCTTGTCACAACCCTTCCAGCTCAGTTCTCATAAAACACAGAGATACACAATCTAAAGATTACAGATATGACTGAAATCTGTTTTATAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58045830 74 -  94987271 atctcaaaaaaCAGCTCCCATTCCAA--CTTAAAAAAAAAAAAAAGACCCAA--------------CAACGATCTAAATCTGTTTCACAA
i mm10.chr17               I 141 C 0
s canFam3.chr35            26297954 73 +  26524999 ATCCTGGGACCAGCTTCCCAGCTTA-TGCTCA----------------CCAAGCAGGAGCCCGCAAACGTGACGGAAACCCAGTACGTAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105              405 90 -     45298 ATCTTGAAATGAATCTCCCTGCTCAGTGCTCGTAAAATGCACAGCTACTTAAGCAAAAGACCACAGTTAGAGCTGAAATCCGTTTTGTAA
i dasNov3.JH580105         C 0 C 0

a score=30639.000000
s hg38.chr6_GL000254v2_alt  1421452 3 +   4827813 AAG
s panTro5.chr6             30294708 3 + 175400573 AAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525171 3 + 173848474 AAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232270 3 +   2037526 AAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905667 3 + 122973662 AAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784734 3 + 172585720 AAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074260 3 - 170955103 AAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323570 3 +   1495729 AAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421444 3 -    863181 AAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573534 3 -  71996105 AAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259322 3 -    735854 AAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211613 3 -   1829203 AAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30384111 3 + 171630274 CAG
i calJac3.chr4             C 0 I 208
s saiBol1.JH378341           207809 3 +    515838 gag
i saiBol1.JH378341         C 0 I 213
s micMur3.chr6               304177 3 + 123392446 AAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     108391 3 -   1411461 AAA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           256054 3 +  18854210 ATC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58045904 3 -  94987271 AAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26298027 1 +  26524999 --G
i canFam3.chr35            C 0 I 2
s dasNov3.JH580105              495 3 -     45298 AAG
i dasNov3.JH580105         C 0 C 0
e aotNan1.NW_018496904v1     325372 216 -    383796 I
e cebCap1.NW_016107755v1     839611 216 -   1771730 I

a score=66631.000000
s hg38.chr6_GL000254v2_alt  1421455 7 +   4827813 ATGCACT
s panTro5.chr6             30294711 7 + 175400573 ATGCACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525174 7 + 173848474 ATGCACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232273 7 +   2037526 ATGCACT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905670 7 + 122973662 ATGCACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784737 7 + 172585720 ATGCACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074263 7 - 170955103 ATGCACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323573 7 +   1495729 ATGCACT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421447 7 -    863181 ATGCACT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573537 7 -  71996105 ATGCACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259325 7 -    735854 ATGCACT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211616 7 -   1829203 ATGCACT
i colAng1.NW_012115577v1   C 0 C 0
s micMur3.chr6               304180 7 + 123392446 ATGTACA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     108394 7 -   1411461 ATGTACG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           256057 7 +  18854210 ATATATT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58045907 7 -  94987271 ATGCATT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26298030 7 +  26524999 AGGCTTT
i canFam3.chr35            I 2 I 299
s dasNov3.JH580105              498 7 -     45298 GTGGATT
i dasNov3.JH580105         C 0 C 0
e saiBol1.JH378341           207812 213 +    515838 I
e aotNan1.NW_018496904v1     325372 216 -    383796 I
e cebCap1.NW_016107755v1     839611 216 -   1771730 I
e calJac3.chr4             30384114 208 + 171630274 I

a score=68144.000000
s hg38.chr6_GL000254v2_alt  1421462 7 +   4827813 TCTATGC--
s panTro5.chr6             30294718 7 + 175400573 TCTATGC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525181 7 + 173848474 TCTATGC--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232280 7 +   2037526 TCTATGC--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905677 7 + 122973662 TCTACGC--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784744 7 + 172585720 TCTATGC--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074270 7 - 170955103 TCTATGC--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323580 7 +   1495729 TCTATGC--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421454 7 -    863181 TCTATGC--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573544 7 -  71996105 TCTATGC--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259332 7 -    735854 TCTATGC--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211623 7 -   1829203 TCTATGC--
i colAng1.NW_012115577v1   C 0 C 0
s micMur3.chr6               304187 7 + 123392446 TCTATGC--
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     108401 7 -   1411461 TCTATGC--
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           256064 7 +  18854210 TCTATGC--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58045914 7 -  94987271 TCTATGC--
i mm10.chr17               C 0 I 1809
s dasNov3.JH580105              505 7 -     45298 --GGTGGGT
i dasNov3.JH580105         C 0 C 0
e canFam3.chr35            26298037 299 +  26524999 I
e saiBol1.JH378341           207812 213 +    515838 I
e aotNan1.NW_018496904v1     325372 216 -    383796 I
e cebCap1.NW_016107755v1     839611 216 -   1771730 I
e calJac3.chr4             30384114 208 + 171630274 I

a score=10920.000000
s hg38.chr6_GL000254v2_alt  1421469 1 +   4827813 T
s panTro5.chr6             30294725 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525188 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232287 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905684 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784751 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074277 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323587 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421461 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573551 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259339 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211630 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s micMur3.chr6               304194 1 + 123392446 T
i micMur3.chr6             C 0 I 1401
s proCoq1.NW_012149775v1     108408 1 -   1411461 T
i proCoq1.NW_012149775v1   C 0 I 246
s otoGar3.GL873550           256071 1 +  18854210 t
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105              512 1 -     45298 T
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58045921 1809 -  94987271 I
e canFam3.chr35            26298037 299 +  26524999 I
e saiBol1.JH378341           207812 213 +    515838 I
e aotNan1.NW_018496904v1     325372 216 -    383796 I
e cebCap1.NW_016107755v1     839611 216 -   1771730 I
e calJac3.chr4             30384114 208 + 171630274 I

a score=28584.000000
s hg38.chr6_GL000254v2_alt  1421470 5 +   4827813 CTGAT
s panTro5.chr6             30294726 5 + 175400573 CTGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525189 5 + 173848474 CTGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232288 5 +   2037526 CTGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905685 5 + 122973662 CTGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784752 5 + 172585720 ATGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074278 5 - 170955103 ATGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323588 5 +   1495729 ATGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421462 5 -    863181 ATGAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573552 5 -  71996105 ATGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259340 5 -    735854 ATGAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211631 5 -   1829203 ATGAT
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           256072 5 +  18854210 atggt
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105              513 5 -     45298 ACggt
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e mm10.chr17               58045921 1809 -  94987271 I
e proCoq1.NW_012149775v1     108409 246 -   1411461 I
e canFam3.chr35            26298037 299 +  26524999 I
e saiBol1.JH378341           207812 213 +    515838 I
e aotNan1.NW_018496904v1     325372 216 -    383796 I
e cebCap1.NW_016107755v1     839611 216 -   1771730 I
e calJac3.chr4             30384114 208 + 171630274 I

a score=69399.000000
s hg38.chr6_GL000254v2_alt  1421475 9 +   4827813 AGGTAGCAT
s panTro5.chr6             30294731 9 + 175400573 AGGTAGCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525194 9 + 173848474 AGGTAGCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232293 9 +   2037526 AGGTAGCAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905690 9 + 122973662 AGGTAGCAc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784757 9 + 172585720 AGGTAGCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074283 9 - 170955103 AGGTAGCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323593 9 +   1495729 AGGTAGCAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421467 9 -    863181 AGGTAGCAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573557 9 -  71996105 AGGTAGCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259345 9 -    735854 AGGTAGCAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211636 9 -   1829203 AGGTAGCAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30384322 9 + 171630274 aggaggaac
i calJac3.chr4             I 208 C 0
s otoGar3.GL873550           256077 9 +  18854210 aggaaaaat
i otoGar3.GL873550         C 0 I 210
s dasNov3.JH580105              518 9 -     45298 aggtaggat
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e mm10.chr17               58045921 1809 -  94987271 I
e proCoq1.NW_012149775v1     108409 246 -   1411461 I
e canFam3.chr35            26298037 299 +  26524999 I
e saiBol1.JH378341           207812 213 +    515838 I
e aotNan1.NW_018496904v1     325372 216 -    383796 I
e cebCap1.NW_016107755v1     839611 216 -   1771730 I

a score=54145.000000
s hg38.chr6_GL000254v2_alt  1421484 4 +   4827813 agag
s panTro5.chr6             30294740 4 + 175400573 agag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525203 4 + 173848474 agag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232302 4 +   2037526 agag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905699 4 + 122973662 agag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784766 4 + 172585720 AGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074292 4 - 170955103 AGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323602 4 +   1495729 AGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421476 4 -    863181 AGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573566 4 -  71996105 AGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259354 4 -    735854 AGAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211645 4 -   1829203 agag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30384331 4 + 171630274 agag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           208025 4 +    515838 agag
i saiBol1.JH378341         I 213 C 0
s cebCap1.NW_016107755v1     839827 4 -   1771730 agag
i cebCap1.NW_016107755v1   I 216 C 0
s aotNan1.NW_018496904v1     325588 4 -    383796 agag
i aotNan1.NW_018496904v1   I 216 C 0
s otoGar3.GL873550           256296 4 +  18854210 agag
i otoGar3.GL873550         I 210 C 0
s dasNov3.JH580105              527 4 -     45298 aagg
i dasNov3.JH580105         C 0 I 5328
e micMur3.chr6               304195 1401 + 123392446 I
e mm10.chr17               58045921 1809 -  94987271 I
e proCoq1.NW_012149775v1     108409 246 -   1411461 I
e canFam3.chr35            26298037 299 +  26524999 I

a score=74799.000000
s hg38.chr6_GL000254v2_alt  1421488 23 +   4827813 agat------agcagcatgagaagtgatc
s panTro5.chr6             30294744 23 + 175400573 agat------agcagcatgagaagtgatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525207 23 + 173848474 agat------agcagcatgagaagtgatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232306 23 +   2037526 agat------agcagcatgagaagtgatc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905703 23 + 122973662 agat------agcagcatgagaaatgatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784770  8 + 172585720 AGA---------------------TGATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074296  8 - 170955103 AGA---------------------TGATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323606  8 +   1495729 AGA---------------------TGATC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421480  8 -    863181 AGG---------------------TGATC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573570  8 -  71996105 AGA---------------------TGATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259358  8 -    735854 AGA---------------------TGATC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211649 23 -   1829203 agat------agcagcatgagaagtgatc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30384335 23 + 171630274 agat------agcagcatgagaagtgatt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           208029 23 +    515838 agag------agcagcaagagaagtgatc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     839831 23 -   1771730 agat------agcagcatgagaagtgatg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     325592 23 -    383796 agat------agcagcatgagaagtgatc
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           256300 29 +  18854210 agatgccagaaacagcatgagaagtgttt
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e mm10.chr17               58045921 1809 -  94987271 I
e dasNov3.JH580105              531 5328 -     45298 I
e proCoq1.NW_012149775v1     108409 246 -   1411461 I
e canFam3.chr35            26298037 299 +  26524999 I

a score=840292.000000
s hg38.chr6_GL000254v2_alt  1421511 80 +   4827813 ggcctgacattgctggctttggagactgaggcaggaagccacaagctaaggaagt-gggtaacctctggaagctgcaaaag
s panTro5.chr6             30294767 80 + 175400573 ggcctgacattgctggctttggagactgaggcaggaagccacaagctaaggaagt-gggtaacctctggaagctgcaaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525230 80 + 173848474 ggcctgacattgctggctttggagactgaggcaggaagccacaagctaaggaagt-gggtaacctctggaagctgcaaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232329 80 +   2037526 ggcctgacattgctggctttggagactgaggcaggaagccacaagctaagaaagt-gggtaacctctggaagctgcaaaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905726 80 + 122973662 ggcctgacattgctggctttggagactgaggcaggaagccacaagctaaagaagt-gggtaacctctggaagctgcaaaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784778 79 + 172585720 -GCCTgacattgctggctttggagactgaggcaggaagtcacaagctaaggaagt-gagtgacctctggaagctgcaaaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074304 79 - 170955103 -GCCTgacattgctggctttggagactgaggcaggaagtcacaagctaaggaagt-gagtgacctctggaagctgcaaaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323614 79 +   1495729 -GCCTgacattgctggctttggagactgaggcaggaagtcacaagctaaggaagt-gagtgacctctggaagctgcaaaag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421488 79 -    863181 -GCCTgacattgctggctttggagactgaggcaggaagtcacaagctaaggaagt-gagtgacctctggaagctgcaaaag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573578 29 -  71996105 -GCCTGACATTGCTGGctttggagactg---------------------------------------------------ag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259366 79 -    735854 -GCCTgacattgctggctttggagactgaggcaggaagtcacaagctaaggaagt-gagtgacctctggaagctgcaaaag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211672 79 -   1829203 -gcctgacattgctggctttggagactgaggcaggaagtcacaagctaaggaagt-gagtgacctctggaagctgcaaaag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30384358 71 + 171630274 ggc---------ctggctttggagactgtggctggaagccataagctaaagaagt-ggggagcctctggaagctgcaaaag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           208052 80 +    515838 ggcctgacatggctggctttggagactgtggctggaagccataaactaaggaagt-ggggggcctctggaagctgcagaag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     839854 80 -   1771730 gacctgacatggctggctttggagactgaggcaggaagccataagctaaggaagt-gggtggcctctggaagctgcaaaag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     325615 81 -    383796 ggcctgacatggcttgctttggagactgtggctggaagccataaactaaggaagtgggggggtctctggaagctgcaaaag
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     108655 80 -   1411461 ggcctgacattgctggctttgaaggttgaggaagggagcggtgagctgaggaagt-cggtggcctctagaagctgcaaagg
i proCoq1.NW_012149775v1   I 246 I 28
s otoGar3.GL873550           256329 79 +  18854210 aacctgacattgttggctttgaatgttgaggaagggagccatgagctcaggaagt-atgtggcctctagaagctgcaaag-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e mm10.chr17               58045921 1809 -  94987271 I
e dasNov3.JH580105              531 5328 -     45298 I
e canFam3.chr35            26298037 299 +  26524999 I

a score=316150.000000
s hg38.chr6_GL000254v2_alt  1421591 30 +   4827813 acgagggaatggattctctagcagaccatt
s panTro5.chr6             30294847 30 + 175400573 acgagggaatggattctctagcagaccatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525310 30 + 173848474 acgagggaatggattctctagcagaccatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232409 30 +   2037526 atgagggaatggattctctagcagaccatt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905806 30 + 122973662 acgagggaatgggttctctagcagaccatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784857 30 + 172585720 acgagggaatggattctctagcagaccgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074383 30 - 170955103 acgagggaatggattctctagcagaccgtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323693 30 +   1495729 acgagggaatggattctctagcagaccgtt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421567 30 -    863181 acgagggaatggattctctagcagaccgtt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573607 30 -  71996105 atgagggaatggattctctagcagaccgtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259445 30 -    735854 acgagggaatggattctctagcagaccgtt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211751 30 -   1829203 acgagggaatggattctccagcagaccatt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30384429 30 + 171630274 atggggcaatgaagtctccagcagaccatt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           208132 30 +    515838 atgaaggaatggagtctccagcagagcatt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     839934 30 -   1771730 atgagggaacggagtctccagcagaccatt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     325696 30 -    383796 atgggggaatggagtctccagcagaccatt
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           256408 30 +  18854210 gcaaaggaatggattttctactagagcatc
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e mm10.chr17               58045921 1809 -  94987271 I
e dasNov3.JH580105              531 5328 -     45298 I
e proCoq1.NW_012149775v1     108735 28 -   1411461 I
e canFam3.chr35            26298037 299 +  26524999 I

a score=338031.000000
s hg38.chr6_GL000254v2_alt  1421621 30 +   4827813 cagaaggaacctagcactgctgacacctta
s panTro5.chr6             30294877 30 + 175400573 cagaaggaacctagcactgctgacacctta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525340 30 + 173848474 cagaaggaacctagcactgctgacacctta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232439 30 +   2037526 cagaaggaacctagcactgctgacatctta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905836 30 + 122973662 cagaaggagcctagcactgctgacacctta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784887 30 + 172585720 cagaaggaaccaagcattgcggacaccttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074413 30 - 170955103 cagaaggaaccaagcattgcggacaccttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323723 30 +   1495729 cagaaggaaccaagcattgtggacaccttg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421597 30 -    863181 cagaaggaaccaagcattgcggacaccttg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573637 30 -  71996105 cagaaggaaccaagcattgcggacaccttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259475 30 -    735854 cagaaggaaccaagcattgcggacaccttg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211781 30 -   1829203 cagaaggaaccaagcattgtggacaccttg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30384459 30 + 171630274 cagaaggaaccaagcactgctgccaccttg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           208162 30 +    515838 cagaaggaaccaagcactgctgacaccttg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     839964 30 -   1771730 cagaaggaaccaagcactgctgacaccttg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     325726 30 -    383796 cagaagaaaccaagcactgctgctaccttg
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     108763 30 -   1411461 cagaaagaaccaagccctgctgacaccttg
i proCoq1.NW_012149775v1   I 28 C 0
s otoGar3.GL873550           256438 25 +  18854210 cagaaagaaccaaaccctgagg-----ttg
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e mm10.chr17               58045921 1809 -  94987271 I
e dasNov3.JH580105              531 5328 -     45298 I
e canFam3.chr35            26298037 299 +  26524999 I

a score=550614.000000
s hg38.chr6_GL000254v2_alt  1421651 48 +   4827813 a--tttttgcccagtaagacccatttcagact-ctgaactacagaataata
s panTro5.chr6             30294907 48 + 175400573 a--tttttgcccggtaagacccatttcagact-ctgaactacagaataata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525370 48 + 173848474 a--tttttgcccggtaagacccatttcagact-ctgaactacagaataata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232469 48 +   2037526 a--tttttgcccagtaagacccacttcagact-ctgaactacagaataata
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905866 50 + 122973662 atttttttgcccagtaagacccatttcagact-ctgaactacagaataata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784917 48 + 172585720 a--tttttgcctggtaagattcatttcagact-ctaaactacagaataata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074443 48 - 170955103 a--tttttgcctggtaagattcatttcagact-ctaaactagagaataata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323753 48 +   1495729 a--tttttgcctggtaagattcatttcagact-ctaaactagagaataata
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421627 48 -    863181 a--tttttgcctggtaagactcatttcagact-ctaaactacagaataata
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573667 48 -  71996105 a--tttttgcctggtaagactcatttcagact-ctaaactacagaataata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259505 48 -    735854 a--tttttgcctggtaagactcatttcagact-ctaaactacagaataata
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211811 48 -   1829203 a--tttttgcctagtaagactcatttcagact-ctaaactacagaataata
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30384489 48 + 171630274 a--cttttgcccagtaaaacttatttcatact-ctgaactacagaataata
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           208192 48 +    515838 a--tttttgaccagtaaaacttatttcatact-ctgaactacagaataata
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     839994 48 -   1771730 a--tttttgcccagtaaaacttatttcatgct-ctgaactacagaataata
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     325756 48 -    383796 a--tttttgcccaataaaacttatttcatact-ctgaactacagaataata
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     108793 49 -   1411461 a--ttttaacccagtaacacccacttcaggctcctgaactataagacaata
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           256463 49 +  18854210 a--ttttaactcagtaagacccatttcaggcttctgaatgacaagataata
i otoGar3.GL873550         C 0 I 291
s canFam3.chr35            26298336 49 +  26524999 A--TTGTTGCCCAGTGGTACCCACGTTGAATTCCGGAACCACGGAGGTGCT
i canFam3.chr35            I 299 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e mm10.chr17               58045921 1809 -  94987271 I
e dasNov3.JH580105              531 5328 -     45298 I

a score=101631.000000
s hg38.chr6_GL000254v2_alt  1421699 9 +   4827813 aagtaacaa
s panTro5.chr6             30294955 9 + 175400573 aagtaacaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525418 9 + 173848474 aagtaacaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232517 9 +   2037526 aagtaacaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905916 9 + 122973662 aagtaacaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784965 9 + 172585720 aagtaacaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074491 9 - 170955103 aagtaacaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323801 9 +   1495729 aagtaacaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421675 9 -    863181 aagtaacaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573715 9 -  71996105 aagtaacaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259553 9 -    735854 aagtaacaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211859 9 -   1829203 aagtaacaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30384537 9 + 171630274 aagtaacaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           208240 9 +    515838 aagtaacaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     840042 9 -   1771730 aagtaacaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     325804 9 -    383796 aagtagcaa
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     108842 2 -   1411461 -------aa
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr35            26298385 9 +  26524999 AGGTGGTGA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e mm10.chr17               58045921 1809 -  94987271 I
e dasNov3.JH580105              531 5328 -     45298 I
e otoGar3.GL873550           256512 291 +  18854210 I

a score=1471182.000000
s hg38.chr6_GL000254v2_alt  1421708 134 +   4827813 at-gtg-tattgtttcaagctccta---agtttgtgg------taatttgttacagtatcaataggaaactaatacaCAAGATTGCCTTTT---CTCCTCCAGTCTCTGACTCTCTGAGTCTGTTTG------------CACTTCTGTGTTGTTGCACCT
s panTro5.chr6             30294964 134 + 175400573 at-gtg-tattgtttcaagccccta---agtttgtgg------taatttgttacagtatcaataggaaactaatacaTAAGATTGCCTTTT---CTCCTCCAGTCTCTGGCTCTCTGAGTCTGTTTG------------CACTTCTGTGTTGTTGCACCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525427 134 + 173848474 at-gtg-tgttgtttcaagccccta---agtttgtgg------taatttgttacagtatcaataggaaactaatacaTAAGATTGCCTTTT---CTCCTCCAGTCTCTGGCTCTCTGAGTCTGTTTG------------CACTTCTGTGTTGTTGCACCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232526 134 +   2037526 at-gtg-tattgtttcaagccccta---agtttgtgg------taatttgttacagtatcaataggaaactaatacaCAAGATTGTCTTTT---CTCCTCCAGTCTCTGGCTCTCTGAGTCTGTTTG------------CACTTCTGTGTTGTTGCACCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74905925 134 + 122973662 at-gtg-tattgtttcaagccccta---agtttgtgg------taatttgttacagtatcaataggaaactaatacaCAAGATTGCCTTTT---CTCCTCCAGTCTCTGGCTCTCTGAGTCTGTTTG------------CACTTCTGTGTTGTTGCACCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30784974 137 + 172585720 at-gtg-tattgtttcaagccccta---agtttgtgg------taattttttacagtatcaataggaaactaatacaCAAGATTGCCTTTTCTCCTCCTCCAGTCTCTGGCTCTCTGAGTCTATTTG------------CACTTCTGTGTTGTTGCACCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074500 134 - 170955103 at-gtg-tattgtttcaagccccta---agtttgtgg------taattttttacagtatcaataggaaactaatacaCAAGATTGCCTTTT---CTCCTCCAGTCTCTGGCTCTCTGAGTCTATTTG------------CACTTCTGTGTTGTTGCACCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323810 134 +   1495729 at-gtg-tattgtttcaagccccta---agtttgtgg------taattttttacagtatcaataggaaactaatacaCAAGATTGCCTTTT---CTCCTCCAGTCTCTGGCTCTCTGAGTCTATTTG------------CACTTCTGTGTTGTTGCACCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421684 134 -    863181 at-gtg-tattgtttcaagccccta---agtttgtgg------taattttttacagtatcagtaggaaactaatacaCAAGATTGCCTTTT---CTCCTCCAGTCTCTGGCTCTCTGAGTCTATTTG------------CACTTCTGTGTTGTTGCACCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573724 134 -  71996105 at-gtg-tgttgtttcaagccccta---agtttgtgg------taactttttacagtatcaataggaaactaatacaCAAGACTGCCTTTT---CTCCTCCAGTCTCTGACTCTCTGAGTCTGTTTG------------CACTTCTGTGTTGTTGCACCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259562 134 -    735854 at-gtg-tattgtttcaagccccta---agtttgtgg------taattttttacagtatcaataggaaactaatacaCAAGATTGCCTTTT---CTCCTCCAGTCTCTGGCTCTCTGAGTCTATTTG------------TACTTCTGTGTTGTTGTACCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     211868 135 -   1829203 atggtg-tattgtttcaagccccta---agtttgtgg------taattttttacagtatcaataggaaactaatacaCAAGATTGCCTTTT---CTTCTCCAGTCTCTGGCTCTCCGAGTCTATTTG------------CACTTCTGTGTTGTTGCACCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30384546 142 + 171630274 at-gtg-tattgtgtcaagccccta---catttctgg------taatttgttgcagtatcgttaggaaactaattcaCAAGCTTGCC-TTT---CTCCTC--GTCTCTGGCTCTCTGCGTCTATGCACTCTACCACATGCAC-TCTCTGTTGTCGCACCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           208249 122 +    515838 at-gcg-tattgtgtcaagccccta---cttttctgg------taatttgttacagtatcatta-----------CGCGAGGTTGCCTTTT---CTCCTCCTGTCTCTGGCTGTCTGTGTCTATTCC------------CAC-TCTCTGTTGTCACACCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     840051 133 -   1771730 at-gtg-tattgtgtcaagccccta---tgtttctgg------taatttgttacagtatcattaggaaactaataGGCGAGGTTGCCTTTT---CTCCTCCAGTCTCTGGCTCTCTGCGTCTATTCG------------CAC-TCTCTGTTGTTGCACCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     325813 133 -    383796 at-gcg-tattgtgtcaagccccta---cgcttctgg------taatttgttacagtatcattaagaaactaatacGGGAGGTTGCCTTTT---CTCCTCCTGTCTCTGGCGCTCTGCATCCATTTG------------CAC-TCTCTATTGTCGCACCT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     108844 131 -   1411461 -t-gtg-tattgtttcgagccgcta---aatttgtgg------taccttcttacagcaccaataggaaactagtacaTATGATT-CCCTTT---CTCCCTCAGTCTCTGGCTCTCTCATTCTGTCTG------------CGCTGGTCTGTTTTTTGC-CT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           256803 126 +  18854210 at-gtg-tattgtttcaagccacta---agtttgtga------taatttgttatagcaccaataagaaac--------ATGATTGCCCTTT---CTCCCTCAGGCTCTGGCTCTCTGATTCTGTCTG------------CACTGGTCTGTTTTTGCCGCT
i otoGar3.GL873550         I 291 C 0
s canFam3.chr35            26298394 137 +  26524999 ---GTGCTGGGGTTGCAACTTCCTATACAGGTTGCAGATCACCTACGCTGTAGCGGCA--AATAGGAAACCACCACACGTGCTTCCCCATT---TGCCC---ATCCCTGATCCTGTGGGACTATCTG------------CACTACTTTTTTCTCCCTCCT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e mm10.chr17               58045921 1809 -  94987271 I
e dasNov3.JH580105              531 5328 -     45298 I

a score=852744.000000
s hg38.chr6_GL000254v2_alt  1421842 76 +   4827813 TCCAGTTTGTCATATTTTCTGGATGTCTCTGCCTCTCTTGACCTTCTTTTCAGTCTCATGTTATCTCTTTTC----------CTTC
s panTro5.chr6             30295098 76 + 175400573 TCCAGTTTGTCATATTTTCTGGATGTCTCTGCCTCTCTTGACCTTCTTTTCAGTCTCCTGTTATCTCTTTTC----------CTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525561 76 + 173848474 TCCAGTTTGTCATATTTTCTGGATGTCTGTGCCTCTCTTGACCTTCTTTTCAGTCTCCTGTTATCTCTTTTC----------CTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232660 76 +   2037526 TCCAGTTTGTCATATTTTCTGGATGTCTCTGCCTCTCTTGACCTTCTTTTCAGTCTCCTGTTATCTCTTTTC----------CTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74906059 76 + 122973662 TCCAATTTGTCACATTTTCTGAATGTCTCTGCCTCACTTGACCTTCTTTTCAGTCTCCTGTTATCTCTTTTC----------CTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30785111 68 + 172585720 TCCAATTTGTCATATTTTCTGGATGTCTCTGCCTCTC--GACCTT------AGTCTCCTGTTATCTCTTTTC----------CTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074634 68 - 170955103 TCCAATTTGTCATATTTTCTGGATGTCTCTGCCTCTC--GACCTT------AGTCTCCTGTTATCTCTTTTC----------CTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     323944 68 +   1495729 TCCAATTTGTCATATTTTCTGGATGTCTCTGCCTCTC--GACCTT------AGTCTCCTGTTACCTCTTTTC----------CTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421818 76 -    863181 TCCAATTTGTCATATTTTCTGGATGTCTCTGCCTCTCTTGACCTTTTTTTCAGTCTTCTGTTATCTCTTTTC----------CTTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573858 76 -  71996105 TCCAATTTGTCATATTTTCTGGATGTCTCTGCCTCTCTTGACCTTTTTTTCAGTCTCATGTTATCTCTTTTC----------CTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259696 76 -    735854 TCCAATTTGTCATATTTTCTGGATGTCTCTGCCTCTCTTGACCTTTTTTTCAGTCTTCTGTTATCTCTTTTC----------CTTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     212003 76 -   1829203 TCCAATTTGTCATATTTTCTGGATGTCTCTGCCTCTCTTGACCTTTTTTTCAGTCTCCTGTTATCTCTTTTC----------CTTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30384688 84 + 171630274 TCTAATTTGTCACA-TTTCTGGAT-TCTCTGCCTCTCTTGACCTTCTTGTCAGTCTCCTGTTGTCTCTTTTCCTTTGGATTACTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           208371 85 +    515838 TCCAATTTGTCACATTTTCTGGAT-TCTCTGCCTCTCTTGACCTTCTTGGCGGTCTCCTGTTGTTTCTTTTCCTTTGGATTACTTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     840184 85 -   1771730 TCCAATTTGTCACATTTTCTGGAT-TCTCTGCCTTTCTTGACCTTCTTGTGAGTCTCCTGTTATCTCTTTTCCTTTGGATTACTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     325946 85 -    383796 TCCAATTTGTCACATTTTCTGGAT-TCTCTGCCTCTCTTGACCTTCTTGTCGGTCTCCTGTTGTCTCTTTTCCTTTGGATTACTTC
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     108975 86 -   1411461 TCCAATTTGTCACATTTTCTGGAATTCTCTGCCTGTCTTGGCCTTCTTGTCAGTCCCCTTTTGTCTCTTTTCCTCTGGGTTACTTC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           256929 66 +  18854210 TCCAATTTGTCACGTTTTCTGAATTCATCTGC----CTTGGCCTTC----------------ATCTCTTTTCCTTTGGATTACTTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58047730 76 -  94987271 TCTGTTTTATTCTGATATCTGGATTTTACTGCTTTTCTTCACCACCTTGTTGGTCTACCTTTGTCTCCTGtc----------cttc
i mm10.chr17               I 1809 I 212
s canFam3.chr35            26298531 83 +  26524999 --CCCGTTGCCACTGTCTCTGGACATCTGTGCCTCTCCTGGCCTTCCTGTCCATTCTCTGGAGTTCCTTTCC-TGTGGATGGCTTC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e dasNov3.JH580105              531 5328 -     45298 I

a score=148945.000000
s hg38.chr6_GL000254v2_alt  1421918 12 +   4827813 ATTGTCCTGGCT
s panTro5.chr6             30295174 12 + 175400573 ATTGTCCTGGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525637 12 + 173848474 ATTGTCCTGGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232736 12 +   2037526 ATTGTCCTGGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74906135 12 + 122973662 ATTGTCCTGGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30785179 12 + 172585720 ATTGTCCTGGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074702 12 - 170955103 ATTGTCCTGGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     324012 12 +   1495729 ATTGTCCTGGTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421894 12 -    863181 ATTGTCCTGGTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573934 12 -  71996105 ATTGTCCTGGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259772 12 -    735854 ATTGTCCTGGTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     212079 12 -   1829203 ATTGTCCTGGTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30384772 12 + 171630274 ATAGTCCTCGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           208456 12 +    515838 ATTGTCCTGGCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     840269 12 -   1771730 ATTGTCCTGGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     326031 12 -    383796 ATTGTCCTGGTT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     109061 12 -   1411461 ATTTTCCTGGCT
i proCoq1.NW_012149775v1   C 0 I 1
s otoGar3.GL873550           256995 12 +  18854210 ACTTTCTTGGCT
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26298614 12 +  26524999 AGTCTCTTGTTC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e mm10.chr17               58047806 212 -  94987271 I
e dasNov3.JH580105              531 5328 -     45298 I

a score=471623.000000
s hg38.chr6_GL000254v2_alt  1421930 38 +   4827813 TATCCCCAACTCCAAGGCCTCTCAG-------GATCTTTTTGGAT
s panTro5.chr6             30295186 38 + 175400573 TATCCCCAACTCCAAGGCCTCTCAG-------GATCTTTTTGGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525649 38 + 173848474 TATACCCAACTCCAAGGCCTCTCAG-------GATCTTTTTGGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232748 38 +   2037526 TATCCCCAACTCCAAGGCCTCTCAG-------GATCTTTTTGGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74906147 38 + 122973662 TATCCTCAACTCCAAGGCCTCTCAG-------GATCTTTTTGGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30785191 38 + 172585720 TATTCCCAACTCCAAGGCCTCTCAG-------GATCTTTTTGGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074714 38 - 170955103 TATTCCCAACTCCAAGGCCTCTCAG-------GATCTTTTTGGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     324024 38 +   1495729 TATTCCCAACTCCAAGGCCTCTCAG-------GATCTTTTTGGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421906 38 -    863181 TATCCCCAACTCCAAGGCCTCTCAG-------GATCTTTTTGCAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573946 38 -  71996105 TATCCCCAACTCCAAGGCCTCTTAT-------GATCTTTTTGGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259784 38 -    735854 TATCCCCAACTCCAAGGCCTCTCAG-------GATCTTTTTGCAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     212091 38 -   1829203 TATCCCCAACTCCAAGGCCTCTCAG-------GATCTTTTTGGAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30384784 38 + 171630274 TATCCCCGACTCCAAGGCCTCTCAG-------GACCTTTTTGGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           208468 38 +    515838 TATCCCCGACTCCAAGGCCTCTCAG-------GACCTTTTTGGAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     840281 38 -   1771730 TATCCCGGACTCCAAAGCCTCTCAA-------GACCTTTTTGGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     326043 38 -    383796 TATCCCCAACTCCAAGGCCTCTCGG-------GACCTTTTTGGAT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     109074 45 -   1411461 CGTCCCCACCTCCAAGGCCTCCCAGACAATGAGCTCTTTCTGGAT
i proCoq1.NW_012149775v1   I 1 C 0
s otoGar3.GL873550           257008 45 +  18854210 CATTCCCACTGCCAAGGCTTGTCAGACAATGAGTTCTTTCTGGAT
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58048018 42 -  94987271 TATTTCTAGCATCAACAGCTCCTAA---CAGAGTTCTTTCTGGAT
i mm10.chr17               I 212 C 0
s canFam3.chr35            26298626 33 +  26524999 CATTTGAAACCTCAAG-----TCTG-------GGTCTCCTGGGAT
i canFam3.chr35            C 0 I 162
e micMur3.chr6               304195 1401 + 123392446 I
e dasNov3.JH580105              531 5328 -     45298 I

a score=1566814.000000
s hg38.chr6_GL000254v2_alt  1421968 133 +   4827813 CTGGGCTTGAAGTACTGGAGAAATGTCTCTGAGACTCCTCAAGAACCTCA-ATTGTCACCAATCCAAGTGCCTTGCTATGGCCCTCATGG-----GCTTGTcagcggttaacagcttcagttgcacattagaattatct
s panTro5.chr6             30295224 133 + 175400573 CTGGGCTTGAAGTACTGGAGAAATGTCTCTGAGACTCCTCAAGAACCTCA-ATTGTCACCAATCCAAGTACCTTGCCATGGCCCTCATGG-----GCTTGTcagcggttaacagcttcagttgcacattacaattatct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525687 133 + 173848474 CTGGGCTTGAAGTACTGGAGAAATGTCTCTGAGACTCCTCAAGAACCTCA-ATTGTCACCAATCCAAGTACCTTGCCATGGCCCTCATGG-----GCTTGTcagcggttaacagcttcagttgcacattagaattatct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232786 133 +   2037526 CTGGGCTTGAAGTACTGGAGAAATGTCTCTGAGACTCCTCAAGAACCTCA-ATTGTCACCATTCCAAGTGCCTTGCCATGGCCCTCATGG-----GCTTGTcagcggttaacagcttcagttgcacattagaattatct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74906185 133 + 122973662 CTGGGCTTGAAGTACTGGAGAACTGTCTCTGAGACTCCTCAAGAACCTCA-ACTGTCACCAATCCAAGTGCCTTGCCATGGCCCTCATGG-----GCTTGTcagcggttaacagcttcagttgcacattagaattatct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30785229 133 + 172585720 CTGGGCTTGAAGTACTAGAGGAATATCTCTGAGACTCCTCAAGAACCTCA-ATTGTCATCAATCCAAGTGCCTAGCCATGGCCCTCATGG-----GCTTGTcagtggttaacagcttcagttgcacattagaattatct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074752 133 - 170955103 CTGGGCTTGAAGTACTAGAGGAATATCTCTGAGACTCCTCAAGAACCTCA-ATTGTCATCAATCCAAGTGCCTAGCCATGGCCCTCATGG-----GCTTGTcagtggttaacagcttcagttgcacattagaattatct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     324062 133 +   1495729 CTGGGCTTGAAGTACTAGAGGAATATCTCTGAGACTCCTCAAGAACCTCA-ATTGTCATCAATCCAAGTGCCTAGCCATGGCCCTCATGG-----GCTTGTcagtggttaacagcttcagttgcacattagaattatct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     421944 133 -    863181 CTGGGCTTGAAGTACTGGAGGAATATCTCTGAGACTCCTCAAGAACCTCA-ATTGTCATCAATCCAAGTGCCTAGCCATGGCCCTCATGG-----GCTTGTcagcggttaacagcttcagttgcacattagaattatct
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29573984 133 -  71996105 CTGGGCTTGAAGTACTGGAGGAATATCTCTGAGACTCCTCAAGAACCTCA-ATTGTCATCAATCCAAGTGCCTAGCCATGGCCCTCACGG-----GCTTGTcagcggttaacagcttcagttgcacattagaattatct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259822 133 -    735854 CTGGGCTTAAAGTACTGGAGGAATATCTCTGAGACTCCTCAAGAACCTCA-ATTGTCATCAATCCAAGTGCCTAGCCATGGCCCTCATGG-----GCTTGTcagtggttaacagcttcagttgcacattagaattatct
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     212129 133 -   1829203 CTGGGCTTGAAGTACTGGAGGAATATCTCTGAGACTCCTCAAGAACCTCA-ATTGTCATCAATCCAAGTACCTAGCCATGGCCCTCATGG-----GCTTGTcagcggttaacagctttggttgcacattagaattatct
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30384822 130 + 171630274 CTGGGCTTGAAGTACTAGAGAAATGTCCCTGAGT---CTCAAGAACCTCA-ATTGTCACCAACCCAGGTGCCTTGCCATGGCCCTCATGA-----GCTTTTcagtggttaacagcttcatttgcgcattagaatcatct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           208506 133 +    515838 CTGGGCTTGAAGTACTAGAGAAATGTCCCTGAGTCTCCTCAAGAGCCTCA-ATTGTCACCAACCCAGGTGGCTTGCCATGGCCCTCATGA-----GCTTGTcagtggttaagagcttcatttgcacgttagaattatct
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     840319 133 -   1771730 CTGGGCTTGAAGTACTGGAGAAATGTCTCTGAGTCTCCTCAAGAATCTCA-ATTGTCACCAACCCAGGTGCCTTGCCATGGCCCTTATGA-----GCCTGTcagtgcttaacagcttcatttgcacattagaatcatct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     326081 132 -    383796 CTGGGCTTGAAGAACTGGAGAAATGTCTCTGAGTCTCCTCAAGAACCTTA-GTTGTCACCAATCC-GGTGCCTTGCCATGGCCCTCATGA-----GCTTGTcagtggttaacagcttcatttgcacattagaatcatct
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     109119 120 -   1411461 CTG--------------GAGAAGTGTCTCTGAGTGTCTCCGGGAACCTTGTATTGTCACTAATCCAAGTGCCCTGCCATGGCCTTCAAGG-----TCTTGCCCgtgcttcgcagccttgtttgcacattggaagcatct
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           257053 115 +  18854210 CTC--------------AAGAAATGTCTCTGAGTCTCTTTAGGAACCTTGTATTGTCACCAACTGAAGTGCCTTGCCATGGCCTTCAG----------TGTCCATGCTTAAcagccttgcttgcacattagaatcatct
i otoGar3.GL873550         C 0 I 258
s mm10.chr17               58048060 112 -  94987271 GTG-------AGTACCAGAAAAACACCTCTG--------------------AGTTCCTTCAGTCCAAGTGCCTTGCCATGGCCCTCAAGATCTTCTCTTGAcaatgcttcacagccttgtttggacatcgaaaccacca
i mm10.chr17               C 0 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e dasNov3.JH580105              531 5328 -     45298 I
e canFam3.chr35            26298659 162 +  26524999 I

a score=1499675.000000
s hg38.chr6_GL000254v2_alt  1422101 120 +   4827813 gggaaactttaaaactcctgatgcc-caagtgacacctcagaccaattaaacggacaccctgggggtgggtcccaggtgtcagta-cttttaaaagctttccagatggttgcagtgtttagc
s panTro5.chr6             30295357 120 + 175400573 gggaaactttaaaactcctgatgcc-caagtgacacctcagaccaattaaacggacactctggggatgggtcccaggtgtcagta-ctttcaaaagctttccagatgattccagtgtttagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525820 120 + 173848474 gggaaactttaaaactcctgatgcc-caagtgacacctcagaccaattaaacagacactctggggatgggtcccaggtgtcagta-ctttcaaaagctttccagatgattccagtgtttagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     232919 120 +   2037526 gggaaactttaaaactcctgatgcc-caagtgacacctcagaccaattaaacggacacgctggggatgggtcccaggtgtcagta-ctttcaaaagctttccagatggttccagtatttagc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74906318 120 + 122973662 gggaaactttaaaactcctgatgcc-caagtgacacctcagatcaattaaacggacactctcgggatgggtcccaggtgtcagta-cttttaaaagctttccagatggttccagtgtttagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30785362 120 + 172585720 gggaaactttaaaactcctgatgcc-caagtgacacctcagaccaattaaacagacactctagagatgtgtcccaggtatcagta-cttttaaaagctttccagatggttccagtgtttagc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30074885 120 - 170955103 gggaaactttaaaactcctgatgcc-caagtgacacctcagaccaattaaacagacactctagagatgtgtcccaggtatcagta-cttttaaaagctttccagatggttccagtgtttagc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     324195 120 +   1495729 gggaaactttaaaactcctgatgcc-caagtgacacctcagaccaattaaacagacactctagagatgtgtcccaggtatcagta-cttttaaaagctttccagatggttccagtgtttagc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     422077 120 -    863181 gggaaactttaaaactcctgatgcc-caggtgacacctcagaccaattaaacggacactctggagatgtgtcccaggtatcagta-cttttaaaagctttccagatggttccagtgtttagc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29574117 120 -  71996105 gggaaactttaaaactcctgatgcc-caagtaacacctcagaccaattaaacagacactctggagatgtgtcccaggtatcagta-gttttaaaagctttccagatggttccagtgtttagc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     259955 120 -    735854 gggaaactttaaaactcctgatgcc-caggtgacacctcagaccaattaaacggacactctggagatgtgtcccaggtatcagta-cttttaaaagctttccagatggttccagtgtttagc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     212262 120 -   1829203 gggaaactttaaaactcctgatgcc-caagtgacacctcagaccaattacacggacactctggagatgggtcccaggtatcagta-cttttaaaagctttccagatggttccggtgtttagc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30384952 118 + 171630274 gggaaac--taaaattcctgatgcc-caagtgacacctcagaccaattaaacggacactctggggatgggtcccagatgtcagga-ctttgaaaagctttccaggtggtttcagtgtttagc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           208639 120 +    515838 gggagactttaaaattcctgatgtg-caagtgacacctcagaccaattaaacagacactccggggatgggtcccagatgtcagga-ctttgataagctttccaggtggtttcagtgtttagc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     840452 120 -   1771730 gggaaactttaaaattcctgacgcg-caagtgacacctcagaccaattaaacggacactccggggatgggtcccagatgtcagga-cttttaaaagctttccaggtggtttcagtgtttagc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     326213 120 -    383796 gggaaactctaaaattcctgatgcg-caagtgacacctcagaccaattaaacggacactccggggatgggtcccagacgtcagga-cttgtaaaagctttcccggtggtttcagtgttgagc
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     109239 120 -   1411461 ggaaaacttttaaactcctgatgcc-caggtgacacctcagaccaattaaacagaatctctggagatgggtcccaggcatcagta-gtgttgaaagctctccaggaggttccagtgtttagc
i proCoq1.NW_012149775v1   C 0 I 133
s otoGar3.GL873550           257426 119 +  18854210 gggaaacttttaaactcctgatgcc-caggtgacatctcagaccaattaaacagtatttatgaagatgggtcccagacatcagta-gtattcaaagctctccaggaggttccagtgtttac-
i otoGar3.GL873550         I 258 C 0
s mm10.chr17               58048172 105 -  94987271 gagaaacct--aagtttctggttccttgggtgacacctccaaccagtgaagcagaacctctggacatgagtgacggacatcagcagctttcaagctcTTGCGTGATG---------------
i mm10.chr17               C 0 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e dasNov3.JH580105              531 5328 -     45298 I
e canFam3.chr35            26298659 162 +  26524999 I

a score=323011.000000
s hg38.chr6_GL000254v2_alt  1422221 39 +   4827813 taacaggagaaccaTGGTCTTGAATGACG-GCTGTTCATG
s panTro5.chr6             30295477 39 + 175400573 taacaggagaaccaTGGTCTTGAATGACG-GCTGTTCATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525940 39 + 173848474 taacaggagaaccaTGGTCTTGAATGACG-GCTGTTCATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     233039 39 +   2037526 taacaggagaaccaTGGTCTTGAATGACG-GCTGTTCATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74906438 39 + 122973662 taacaagggaaccaTGGTCTTGAATGATG-GGTATTCATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30785482 39 + 172585720 taaCAGGGGAACCATGGTCTTGAACGGTG-GATGTTCATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30075005 39 - 170955103 taaCAGGGGAACCATGGTCTTGAACGGTG-GATGTTCATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     324315 39 +   1495729 taaCAGGGGAACCATGGTCTTGAACGGTG-GATGTTCATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     422197 39 -    863181 taaCAGGGGAACCATGGTCTTGAACGGTG-GATGTTCATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29574237 39 -  71996105 taaCAGGGGAACCATGGTCTTGAACGGTG-GATGTTCGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     260075 39 -    735854 taaCAGGGGAACCGTGGTCTTGAACGGTG-GATGTTCATG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     212382 39 -   1829203 taaCAGGGGAACCATGATCTTGAACGGTG-GATGTTCATG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30385070 32 + 171630274 taaCAGGGAAACCATGGCTTTGAATGATG-GCT-------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           208759 32 +    515838 taaCAGGGAAGCCATGGCCTTGAATGACA-GCT-------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     840572 39 -   1771730 taaCAGGGAAACCATGGCCTTGAATGATA-GGTGTACATG
i cebCap1.NW_016107755v1   C 0 I 16
s aotNan1.NW_018496904v1     326333 32 -    383796 taaCAGGGAAACCATGGCCTTGAATGACG-GCT-------
i aotNan1.NW_018496904v1   C 0 I 2
s otoGar3.GL873550           257545 38 +  18854210 --caaaggAAGACACGGTCTTGCATGATGAGATGTGCAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58048277 22 -  94987271 -----------------TCGTGCATCATG-AGTCTGCAGT
i mm10.chr17               C 0 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e dasNov3.JH580105              531 5328 -     45298 I
e proCoq1.NW_012149775v1     109359 133 -   1411461 I
e canFam3.chr35            26298659 162 +  26524999 I

a score=24452.000000
s hg38.chr6_GL000254v2_alt  1422260 7 +   4827813 TGGGCTG-
s panTro5.chr6             30295516 7 + 175400573 TGGGCTG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525979 7 + 173848474 TGGGCTG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     233078 7 +   2037526 TGGGCTG-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74906477 7 + 122973662 TGGGCTG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30785521 7 + 172585720 TGAAcct-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30075044 7 - 170955103 TGAAcct-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     324354 7 +   1495729 TGAAcct-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     422236 7 -    863181 TGGAcct-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29574276 7 -  71996105 TGGAcct-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     260114 7 -    735854 TGGAcct-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     212421 7 -   1829203 TGGAcct-
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           257583 7 +  18854210 TGGGTCT-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58048299 7 -  94987271 -AGACCCG
i mm10.chr17               C 0 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e dasNov3.JH580105              531 5328 -     45298 I
e proCoq1.NW_012149775v1     109359 133 -   1411461 I
e canFam3.chr35            26298659 162 +  26524999 I
e saiBol1.JH378341           208791 0 +    515838 C
e aotNan1.NW_018496904v1     326365 2 -    383796 I
e cebCap1.NW_016107755v1     840611 16 -   1771730 I
e calJac3.chr4             30385102 0 + 171630274 C

a score=31715.000000
s hg38.chr6_GL000254v2_alt  1422267 4 +   4827813 -GTCA
s panTro5.chr6             30295523 4 + 175400573 -GTCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525986 4 + 173848474 -GTCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     233085 4 +   2037526 -GTCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74906484 4 + 122973662 -GTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30785528 4 + 172585720 -gtca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30075051 4 - 170955103 -gtca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     324361 4 +   1495729 -gtca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     422243 4 -    863181 -gtca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29574283 4 -  71996105 -gtca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     260121 4 -    735854 -gtca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     212428 4 -   1829203 -gtca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30385102 4 + 171630274 -GTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           208791 4 +    515838 -GTCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     840627 4 -   1771730 -GTCA
i cebCap1.NW_016107755v1   I 16 C 0
s aotNan1.NW_018496904v1     326367 2 -    383796 ---CA
i aotNan1.NW_018496904v1   I 2 C 0
s otoGar3.GL873550           257590 4 +  18854210 -Gtcc
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58048306 5 -  94987271 CCCCC
i mm10.chr17               C 0 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e dasNov3.JH580105              531 5328 -     45298 I
e proCoq1.NW_012149775v1     109359 133 -   1411461 I
e canFam3.chr35            26298659 162 +  26524999 I

a score=771388.000000
s hg38.chr6_GL000254v2_alt  1422271 80 +   4827813 ctccattttgctccttgtgctctggctgcagtgccttcta-cttctcgttccccga----gccactgctggtgcggctgcaccgc
s panTro5.chr6             30295527 80 + 175400573 ctccattttgctccttgtgctctggctgcagtgccttcta-cttctcgttccccga----gccactgctggtgcggctgcaccgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30525990 80 + 173848474 ctccattttgctccttgtgctctggctgcagtgccttcta-cttctcgttccccga----gccactgctggtgcggctgcaccgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     233089 79 +   2037526 ctccattttgctccttgtgctctggctgcagtgccttcta-cttct-gttccccga----gccactgctggtgcggctgcaccgc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74906488 84 + 122973662 ctccatcttgctccttgtgctctgtctgcagtgccttcta-tttcttgttccctgagcatgccattgctggtgcggctgtaccgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30785532 84 + 172585720 ctctattttgctccttgtgccctggctgcagtgctttcta-tttgttgttccctgagcgtgccactgctgctgcagctgtactgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30075055 84 - 170955103 ctctattttgctccttgtgccctggctgcagtgctttcta-tttgttgttccctgagcatgccactgctgctgcagctgtactgc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     324365 84 +   1495729 ctctattttgctccttgtgccctggctgcagtgctttcta-tttgttgttccctgagcgtgccactgctgctgcagctgtactgc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     422247 84 -    863181 ctccattttgctccttgtgccctggctgcagtgctttcta-tttgttgttccctgagcatgccactgctgctgcagctgtactgc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29574287 84 -  71996105 ctgtattttgctccttgtgccctggctgcagtgctttcta-tctgttgttctctgagcatgccactgctgctgcagctgtactgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     260125 84 -    735854 ctctattttgctccttgtgccctggctgcagtgctttcta-tttgttgttctctgagcatgccactgctgctgcagctgtactgc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     212432 84 -   1829203 ctccattttgcttcttgtgccctggctgcagtgcttccta-tttgttgttccctgagcatgccaccgctgctgcagctgtactgc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30385106 72 + 171630274 CTccattttgctccttatgctct-gctgcagcgccttcta-tctgttgttccctgagcatgccgctgc-----------tggcgc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           208795 84 +    515838 ctccattttgctccttatgctctggctgcagcgccttctc-cttgttgttccctgagcacgccactgctggtgtggctgtggcgc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     840631 82 -   1771730 ctccattttgcttcttatgctct-g-tgcaacgccttcga-tttgtcgttccctgagcatgccgctgctggtgcggctgtggcac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     326369 83 -    383796 ctccattttgctccttatgctct-gctgcagcgccttcta-tttgttgtgccctgagcatgccgctgctggtgcggctgtggcgc
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           257594 84 +  18854210 tgccattttactcctggtattgtagctgcactgccttata-ttttctattccttgaccataccaagatttatgtagctatacagc
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58048311 85 -  94987271 TCCTGTTTTGTTTCTTCTGTTCTGACTGCAGTGCCTTTTAGTCTCCTGTTGCTTGACCATTCCAAGGCTGGTCTAGATGTACAGT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26298821 53 +  26524999 ccacatcaggctccctgcatggagcctgcttctccttctg-cctctctctctct-------------------------------
i canFam3.chr35            I 162 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e dasNov3.JH580105              531 5328 -     45298 I
e proCoq1.NW_012149775v1     109359 133 -   1411461 I

a score=1375067.000000
s hg38.chr6_GL000254v2_alt  1422351 118 +   4827813 ctttgcactcactgttccctctgcctgggcccctgc-tcctccagagcttcaca-tggctttctccattttctcactcatgtctcaacccaaaggtaacat--tca-gagaggacttc------------------------------------------------------------------------------------------------------------------------------------tttta
s panTro5.chr6             30295607 118 + 175400573 ctttgcactcactgttccctctgcctgggcccctgc-tcctccagagcttcaca-tggctttctccattttctcactcatgtctcaacccaaaggtaacat--tca-gagagggcttc------------------------------------------------------------------------------------------------------------------------------------tttta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30526070 118 + 173848474 ctttgcactcactgttccctctgcctgggcccctgc-tcctccagagcttcaca-tggctttctccattttctcactcatgtctcaacccaaaggtaacat--tca-gagaggacttc------------------------------------------------------------------------------------------------------------------------------------tttta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     233168 117 +   2037526 ctttgcactcgctgttccctctgcctgggcctctgc-tcctccagagcttcaca-tggctttctccattttctcactcatgtctcaacccaaaggtaacct--tca-gagaggacttc-------------------------------------------------------------------------------------------------------------------------------------ttta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74906572 118 + 122973662 ctttgcactcgctgttccctctgcctgggcccctgc-tcctccagagcttcaca-tggctttctccattttctcactcatgtctcaacccaaaggtaacat--tca-gagaggacttc------------------------------------------------------------------------------------------------------------------------------------tttta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30785616 118 + 172585720 ctttgcactcgctcttccctctacttgggcccctgc-tcctccagagcctcaca-tggctttctccattttctcactcatgtctcaacccaaacgtaacat--tca-gagaggacttc------------------------------------------------------------------------------------------------------------------------------------tttta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30075139 118 - 170955103 ctttgcactcgctcttccctctacttgggcccctgc-tcctccagagcctcaca-tggctttctccattttctcactcatgtctcaacccaaacgtaacat--tca-gagaggacttc------------------------------------------------------------------------------------------------------------------------------------tttta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     324449 118 +   1495729 ctttgcactcgctcttccctctacttgggcccctgc-tcctccagagcctcaca-tggctttctccattttctcactcatgtctcaacccaaacgtaacat--tca-gagaggacttc------------------------------------------------------------------------------------------------------------------------------------tttta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     422331 118 -    863181 ctttgcactcgctcttctctctacttgggccgctgc-tcctccagagcctcaca-tggctttctccattttctcactcatgtctcaacctgaacgtaacat--tca-gagaggacttc------------------------------------------------------------------------------------------------------------------------------------tttta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29574371 118 -  71996105 ctttgcactcgctcttctctctacttgggcccctgc-tcctccagagcctcaca-tggctttctccattttctcactcatgtctcaacccaaacgtaacat--tca-gagaggacttc------------------------------------------------------------------------------------------------------------------------------------tttta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     260209 118 -    735854 ctttgcacttgctcttctctctacttgggcccctgc-tcctccagagcctcaca-tggctttctccattttctcactcatgtctcaacctaaacgtaacat--tca-gagaggacttc------------------------------------------------------------------------------------------------------------------------------------tttta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     212516 118 -   1829203 ctttgcactcgctcttccctccacttgggcccctgc-tcctccagagcctcaca-tggctttctccattttctcactcatgtctcaatccaaacgtaacaa--tca-gagaggacttc------------------------------------------------------------------------------------------------------------------------------------tttta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30385178 118 + 171630274 ctttgcacttgccgctccctctacttgggcctctgc-tccttcagagcttcaca-tggctttctccattttctcactcatgtctcaacccaaaggtaacat--tta-gagaggacttc------------------------------------------------------------------------------------------------------------------------------------tttta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           208879 118 +    515838 cttcgcactcgctgctccctctgcttgggcctctgc-tccttcagagcttcaca-tggctttctccattttctcactcatgtctcaacccaaaggtaacat--tca-gagaggacttc------------------------------------------------------------------------------------------------------------------------------------tttta
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     840713 117 -   1771730 ctttgcacttgctgccccctctgcttgggcctctgc-tccttcagagcttcacg-tggcttac-ccattttctcactcatgtctcaacccaaaggtaacaa--tta-gagaggacttc------------------------------------------------------------------------------------------------------------------------------------tttta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     326452 118 -    383796 ctttgcactcgctgccccctctgcttgggcctctgc-tccttcagagctgcaca-tggctttctccattttctcactcatgtctcaacccaaaggtaacat--tta-gagaggacttc------------------------------------------------------------------------------------------------------------------------------------tttta
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     109492 119 -   1411461 ctttgcactcagtgttccttctgcgtgggccccctc--cctccagagcttcaca-tggctttctccatcttctcttccaggtctcaactcaaaggtaacatagtca-gagaggactcc------------------------------------------------------------------------------------------------------------------------------------tttta
i proCoq1.NW_012149775v1   I 133 C 0
s otoGar3.GL873550           257678 114 +  18854210 ttttgtattccacgttccttctacttggggcccctcttcctctagagtttcaca-tggcttcc----ttttctcattcaggtctcaactcaaagggaacatattca-gaaaggacttc---------------------------------------------------------------------------------------------------------------------------------------ta
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58048396 241 -  94987271 CTCCACACTTATTGTTCCTTCACTTTAGAG-------------AAAGCTTCGAATTATCTCTCTCCGTCATCTCATTCAGGTCTCATCGCAAAGGCAACATAGTCA-GAGAGGACTCTTAttttcagtgttagggatggatgccatggtctcacacctgctgggtaagtaatttattattgagctacatatccagccccAGAGAAGGCTTCATCCATTAGCatttatttatttatttatttatttatttatttTA
i mm10.chr17               C 0 I 179
s canFam3.chr35            26298874  79 +  26524999 --------------ctccctctgtctg----------tctctcatgaataaata--------------------aataaaatctaaaacaaaACAGAACATACTCAGGAGAGGATATC------------------------------------------------------------------------------------------------------------------------------------ACTCA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e dasNov3.JH580105              531 5328 -     45298 I

a score=2415099.000000
s hg38.chr6_GL000254v2_alt  1422469 207 +   4827813 ---ccacttgtatctcaagtggtctttctcaaaggtattcactatctctttacccatatttattatcttcatgctatttattactgtctgcagtgatctatttatggacttttgatgtgtctctgtccaatagaaggtga-------gt------gaacagggacctaaccttcatgtttgctgctgctttccctgcacctagaatagcacctggcacacagt
s panTro5.chr6             30295725 207 + 175400573 ---ccacttgtatctcaagtggtctttctcaaaggtattcactatctctttacccatatttattatcttcatgctattcattactgtctgcaatgatctatttatggacttttgatctgtctctgtccaatagaaggtaa-------gt------gaacagggacctaaccttcatgttcgctgctgctttccctgcacctagaatagcacctggcacacagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30526188 207 + 173848474 ---ccacttgtatctcaagtggtctttctcaaaggtattcactatctctttacccatatttattatcttcatgctattcattactgtctgcaatgatctatttatggacatttgatctgtctctgtccaatagaaggtaa-------gt------gaacagggacctaaccttcatgttcgctgctgctttccctgcacctagaatagcacctggcacacagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     233285 207 +   2037526 ---ccacttgtatctcaagtggtctttctcaaaggtattcactatctctttacccatatttattatcttcatgctatttattactgtctacaatgatctatttatggacttttgatctgtctctgtccaatagaaggtaa-------gt------gaacagggacctaaccttcatgttcgctgctgctttccctgcacctagaatagtacctggcacacagt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74906690 207 + 122973662 ---ccacttgtatctcaagtggtctttctcaaaggtattcactatctctttacccatatttattatcttcatgctatttattactgtctgcaatgatctatttatagacttttgatctgtctctgtccaatagaaggtaa-------gt------gaacagggacctaaccttcatgttcgctgctgctttccctgcacctagaatagcacctggcacacagt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30785734 207 + 172585720 ---ccatctgtatctcaagtggtctatctcaaagacatccactatatatttacccatatttattatctccatggtatttattactgtctgcaatgatctatttatgaacttttgatctgtctctgtccaatagaaggtaa-------gt------gaacagggacctaacctttatgttcactgctgctttccctgcacctagaatagcacctagcacacagt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30075257 207 - 170955103 ---ccatctgtatctcaagtggtctatctcaaagacatccactatatatttacccatatttattatctccatggtatttattactgtctgcaatgatctatttatgaacttttgatctgtctctgtccaatagaaggtaa-------gt------gaacagggacctaaccttgatgttcactgctgctttccctgcacctagaatagcacctagcacacagt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     324567 207 +   1495729 ---ccatctgtatctcaagtggtctatctcaaagacattcactacatatttacccatatttattatctccatggtatttattactgtctgcaatgatctatttatgaacttttgatctgtctctgtccaatagaaggtaa-------gt------gaacagggacctaaactttatgttcactgctgctttccctgcacctagaatagcacctggcacacagt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     422449 207 -    863181 ---ccatctgtatctcaagtggtctatctcaaagacattcactatatatttacccatatttattatctccatggtatttattactgtctgcaatgatctatttatgtacttttgatctgtctctgtccaatagaaggtaa-------gt------gaacagggacctaacctttatgttcgctgctgctttccctgcacctagaatagcacctggcacacagt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29574489 207 -  71996105 ---ccatctgtatctcaagtggtctatctcaaagacattcactatatatttacccatatttattatctccatggtatttattactgtctgcaatgatctatttatgaacttttgatctgtctctgtccaatagaaggtaa-------gt------gaacagggacctaacctttatgttcactgctgctttccctgcacctagaatagcacctggcacacagt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     260327 207 -    735854 ---ccatctgtatctcaagtggtctatctcaaagacattcactatatatttacccatatttattatctccatggtatttattactgtctgcaatgatctatttatgaacttttgatctgtctctgtccaatagaaggtaa-------gt------gaacagggacctaacctttatgtttgctgctgctttccctgcacctagaatagcacctggcacacagt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     212634 207 -   1829203 ---ccatctgtatctcaagtggtctatctcaaaggcattcactatatatttacccatatttattgtctccatggtatttattactatctgcaatgatctatttatgaacttttgatctgtctctgtccaatagaaggtaa-------gt------gaacagggacttaacctttatgtccgttgctgctttccctgcacctagaatagcacctggcacacagt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30385296 190 + 171630274 ---ccacatgattctcaagttgtctttctcaaaggcattcactaactctgtacccagatttagtatcttcctggtatttattactgtctgcgatgatctatttattgacttttcatctgtctctctccaacagaa------------------------------ctaaccttcatgtttgctgctgctttccctgcacctagaacagcacctggcacacagt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           208997 190 +    515838 ---ccacatgtatcttaagtagtctttctcaaaggcattcactatctctgtacccagatttagtatcttcctggtatttattactatctgcaataacctacttatcgaccttttgtctgtctctatccaacagaa------------------------------ctaaccttcgtgttcgctgctgctttccctgcacctagaacagcacctggcacacagt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     840830 190 -   1771730 ---ccacatgtatctcaagtggtctttctcaaaggcattcactatctctgtacccagatttagtatcttcctggtatttattacgatctgcagtgatctacttattgacttttcatctgtctctatccaacagaa------------------------------caaaccttcatgtttgctgctgctttccctgcacctagaacagcacctggcacccagt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     326570 190 -    383796 ---ccacatgtatctcaagtggtctttctcaaaggcattcactatctctgtacccagatttagtatcttcctggtacttattactgtcggcaatgatctatttatcgactttttgtctgtctctatccaacagaa------------------------------ctaaccttcatgttcgctgctgctttccctgcacctagaacagcacctggcacacggt
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     109611 214 -   1411461 ---ccacttgtatctcaagtagttttcctcaaaggcattcactatctctttacccacatttactgtcttcacggcatgtattactgtctgcagtgatgtgtttacctgtctgtgatctgttcctatccaagagaagggaagtggcatgg------gaagaggaacctaaccttcacgttcgctgctgctttccctgcacccgcagcagtgcctggcacatagt
i proCoq1.NW_012149775v1   C 0 I 36
s otoGar3.GL873550           257792 196 +  18854210 ---ccacttgtatctcaagaagttttcctcaaaggcattcactatctctttacccagatttactgtattcgtggtatttgttgctatctacaatgatctatttgcttgtttatggtctgtttctatccaacagaaggtaa---------------------gatcccaaccttcattggtgctacagctttccctgcacctgaaatatcacctggcacac---
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58048816 200 -  94987271 ---CCAAATAAATTTCAAGTCATTTTTCTCAAAGGAATTAATTATCTTTTTA-----AGTTTGTATCTTCATCATCTTTATCTTGGTCTCCAATACTCTATTTACCTGTTTTTACT-----TCTATCCAGCAGATGACAAGCCCCACAG------GAGCAGGAATGTAGCCTTCATGTTTACAACTGTCTGACACACACCTGGCCCAATGCCCGGCACA----
i mm10.chr17               I 179 C 0
s canFam3.chr35            26298953 200 +  26524999 GCACCATGT-----CTGAGGAGTTCTCCACAAGGGcactgactgtctcctcacccagagttactgtcctcctggca-gtgtcaccacctgaaatgatctagctgtg---ttttgagctgcttctctccaacaaaaggcag-------ttttactggagcagaaggctggccttcaggt-------tgcggtccctgaacttggaatggtgcctggcacacggc
i canFam3.chr35            C 0 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e dasNov3.JH580105              531 5328 -     45298 I

a score=317966.000000
s hg38.chr6_GL000254v2_alt  1422676 42 +   4827813 gagccttaataaaCTTAGGTCCAG-TTGTTGAATTGCTCATTA-
s panTro5.chr6             30295932 42 + 175400573 gagccttaataaacttaggtccag-ttgttgaatTGCTCATTA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30526395 42 + 173848474 gagccttaataaacttaggtccag-ttgttgaatTGCTCATTA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     233492 42 +   2037526 gagccttaataaacttaggtccag-ttgttgaatTGCTCATTA-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74906897 42 + 122973662 gagccttaataaacttaggcccag-ttgttgaatTGCTCATCA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30785941 32 + 172585720 gagT---------CTTAGGCCCAG-CTGTTGAATTGCTCATT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30075464 32 - 170955103 gagT---------CTTAGGCCCAG-CTGTTGAATTGCTCATT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     324774 32 +   1495729 gagT---------CTTAGGCCCAG-CTGTTGAATTGCTCATT--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     422656 32 -    863181 gagT---------CTTAGGCCCAG-CTGTTGAATTGCTCATT--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29574696 32 -  71996105 gagT---------CTTAGGCCCAG-CTGTTGAATTGCTCATT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     260534 32 -    735854 gagT---------CTTAGGCCCAG-CTGTTGAATTGCTCATT--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     212841 41 -   1829203 gaatcttaataaaCTTAGGCCCAG-CTGTTGAATTGCTCATT--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30385486 41 + 171630274 gagtctcaataaaCTTCGGCTCCA-TTGTTGAATTGCTCGTG--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           209187 41 +    515838 gagtcttgataaacttaggcccag-ttgttgaatTGCTCATT--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     841020 40 -   1771730 gagtctcaataaaCTTAGGC-CAG-ATGTTGAATTGCTCATT--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     326760 41 -    383796 gagtctcgataaaCTTAGGCCCAG-TTGTTGAATTGCTCATT--
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           257988 41 +  18854210 -agcctcaacaaatCTATGCCCAGTTTGTTGTCTTGCTTTTC--
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58049016 39 -  94987271 GTGTCTCAATG--TCTCTACTCAG-TTGTTGGATTACTCATT--
i mm10.chr17               C 0 I 1
s canFam3.chr35            26299153 42 +  26524999 aggtctcggcaaacatACATGCAG-TCGTGGAATTGGCTGTC-A
i canFam3.chr35            C 0 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e dasNov3.JH580105              531 5328 -     45298 I
e proCoq1.NW_012149775v1     109825 36 -   1411461 I

a score=276338.000000
s hg38.chr6_GL000254v2_alt  1422718 33 +   4827813 CACTGATTGGACAACCTGAGAGGG---TCATTTGAT
s panTro5.chr6             30295974 33 + 175400573 CACTGATTGGACAATCTGAGAGGG---TCATTTGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30526437 33 + 173848474 CACTGATTGGACAATCTGAGAGGG---TCATTTGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     233534 33 +   2037526 CAGTGATTGGACAATCTGAGAGGG---TCATTTGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74906939 33 + 122973662 CACTACTTGGACAATCTGAGAGGG---TCATTTGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30785973 24 + 172585720 ---------TACAATCTGAGAGGG---TCATTTGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30075496 24 - 170955103 ---------TACAATCTGAGAGGG---TCATTTGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     324806 24 +   1495729 ---------TACAATCTGAGAGGG---TCATTTGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     422688 24 -    863181 ---------TACAATCTGAGAGGG---TCATTTGAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29574728 24 -  71996105 ---------TACAATCTGAGAGGG---TCATTTGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     260566 24 -    735854 ---------TACAATCTGAGAGGG---TCATTTGAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     212882 24 -   1829203 ---------TACAATCTGAGAGGG---TCATTTGAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30385527 32 + 171630274 -ACTGATTGGACAATGTGAGAGGG---TCATTTGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           209228 32 +    515838 -ACTGATTGGACAATGTGAGAGGG---TCATTTGAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     841060 32 -   1771730 -ACTGATTGGACAATGTGAGAGGG---TCATTTGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     326801 32 -    383796 -ACTGACTGGACAGTGTGAGAGGG---TTATTTGAT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     109861 33 -   1411461 CACGGATCGGGCACAGTGAGAGGG---TCCTTTGAC
i proCoq1.NW_012149775v1   I 36 C 0
s otoGar3.GL873550           258030 30 +  18854210 --CAGAT-GGGCAAAGTGAAGTGG---TCTTTTGAT
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58049056 34 -  94987271 --TTGATTGGGCAAAGTGAGAAGGTCTTCCTTCGAA
i mm10.chr17               I 1 C 0
s canFam3.chr35            26299195 31 +  26524999 --CCACGTGGGTGAAGTGAGAGGG---ACTTCTGAC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               304195 1401 + 123392446 I
e dasNov3.JH580105              531 5328 -     45298 I

a score=540243.000000
s hg38.chr6_GL000254v2_alt  1422751 40 +   4827813 TGACTCTGCTTAGACCTTCT----------------TATCCTT--CTCAACCAATAGT
s panTro5.chr6             30296007 40 + 175400573 TGACTCTGCTTAGACCTTCT----------------TATCCTT--CTCAACCAATAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30526470 40 + 173848474 TGACTCTGCTTAGACCTTCT----------------TATCCTT--CTCAACCAATAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     233567 40 +   2037526 TGACTCTGCTTAGACCTTCT----------------TATCCTT--CTCAACCAATAGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74906972 40 + 122973662 TGACTCTGCTTAGACCTTCT----------------TATCCTT--CTCAACCAATAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30785997 40 + 172585720 TGACTCTGCTTAGACCTTCT----------------TATCCTT--CTCAACCAATAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30075520 40 - 170955103 TGACTCTGCTTAGACCTTCT----------------TATCCTT--CTCAACCAATAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     324830 40 +   1495729 TGACTCTACTTAGACCTTCT----------------TATCCTT--CTCAACCAATAGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     422712 40 -    863181 TGACTCTGCTTAGACCTTCT----------------TATCCTT--CTCAACCAATAGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29574752 40 -  71996105 TGACTCTGCTTAGACCTTCT----------------TATCCTT--CTCAACCAATAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     260590 40 -    735854 TGACTCTGCTTAGACCTTCT----------------TATCCTT--CTCAACCAATAGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     212906 40 -   1829203 TGACTCTGCTTAGACCTTCT----------------TATCCTT--CTCAACCAATAGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30385559 39 + 171630274 TGACTCTGCTTAGACCTTCA----------------GATC-TT--CTCAATCATTAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           209260 38 +    515838 TGA--CTGCTTAGACCTTCG----------------GATCGTT--CTCAATCAGTAGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     841092 40 -   1771730 TGGCTCTGCTTAGACCTTCG----------------GATCCTT--CTCAATCAATAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     326833 38 -    383796 TGACTCTGCTT--ACCTTCG----------------GATCCTT--CTCAATCAATAGT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               305596 40 + 123392446 TGACTCTGCTGAGACCTTCT----------------TGTCCTT--CTCAGTCAATAGT
i micMur3.chr6             I 1401 I 57
s proCoq1.NW_012149775v1     109894 40 -   1411461 TGACCCTGCTTAGACCTTCT----------------TGTCCTT--CTCAGTCAATAGT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           258060 38 +  18854210 TAATTCTGCTTAGACTTTCT------------------TTCTT--CTCAGTCAGTAGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58049090 54 -  94987271 TGA--CTACTTATCTCATCTAAGTGCCAGACAAAGACACTCTT--ATCAATTAGTAGT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26299226 54 +  26524999 AGACTCTGCAGAGACCTTCTAGATGCTGGCCA----TAGTCTTACCCCTACCAGCAGA
i canFam3.chr35            C 0 C 0
e dasNov3.JH580105              531 5328 -     45298 I

a score=687978.000000
s hg38.chr6_GL000254v2_alt  1422791 62 +   4827813 CATGCCTCACTGGCAGATGCCAGGCATAGTGCTGGGAAACGCTCAGGTGTTATAAGACATAT
s panTro5.chr6             30296047 62 + 175400573 CATGCCTCACTGGCAGATGCCAGGCATAGTGCTGGGAAACGCTCATGTGTTGTGAGACATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30526510 62 + 173848474 CATGCCTCACTGGCAGATGCCAGGCATAGTGCTGGGAAACGCTCATGTGTTGTAAGACATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     233607 62 +   2037526 CATGCCTCACTGGCAGATGCCGGGCATAGTGCTGGGAAATGCTCATGTGTTGTAAGACATAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74907012 62 + 122973662 CATGCCTCACTGGCAGATGCCAGGTACAGTGCTGGGAAACGCTTATGTGATGTAAGACATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30786037 62 + 172585720 CATGCCTCACTGGCAGATTCCAGGCATAGTGCTGGGAAACACTCATGTGATATAAAACATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30075560 62 - 170955103 CATGCCTCACTGGCAGATTCCAGGCATAGTGCTGGGAAACACTCATGTGATATAAAACATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     324870 62 +   1495729 CATGCCTCACTGGCAGATTCCAGGCACGGTGCTGGGAAACACTCATGTGATATAAGACATAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     422752 62 -    863181 CATGCGTCACTGGCAGATTCCAGGCACGGTGCTGGGAAACACTCATGTGATATAAAACATAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29574792 62 -  71996105 CATGCCTCACTGGCAGATTCCAGGCACGGTGCTGGGAAACACTCATGTGATATAAAACATAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     260630 62 -    735854 CATGCCTCACTGGCAGATTCCAGGCACGGTGCTGGGAAACACTCATGTGATATAAGACATAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     212946 62 -   1829203 CATGCCTCACTGGCAGATTCCAGGCACAGTGCTGGGAAACACTCATGTGATATAAGACATAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30385598 62 + 171630274 CGTGCCTCACTGACATATGCCAGGCACAGTGCTGGGAAATTCTCATGTGATATGAGACGTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           209298 62 +    515838 CATGCCTCACTGACATATGCCAGGCACAGTGCTGGGAAACGCTCATGTGATGTGAGACATAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     841132 62 -   1771730 CATGCCTCACTGACATATGCCAGGCACGGTGCTGGGAAACGCTCATGTGATATGAGACATAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     326871 62 -    383796 CATGCCTCACTGACATCTGCCAGGCACAGTGCTGGGAAACGCTCATGTGATATGAGACATAT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     109934 61 -   1411461 CATTCCTCACCGGCAGATGCCAGGCACCGTGCTGGGAAATGCTCCTGTCATGTGGGACACA-
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           258098 39 +  18854210 CACTCCTCAGTGGCAGATGCCAGACAC---------------------TATATGAGACAT--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58049144 54 -  94987271 TCTTCCTCATTGTCAGGTGCCCAGGATGGTG------AATGCTTAGGTGCTAGAAGAACT--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26299280 57 +  26524999 TCTGCTTCCATGGCTGAGGTCAGG--TTGTGCTGGG-GGTGTTCATGTGGTAGGGCAGGT--
i canFam3.chr35            C 0 C 0
e micMur3.chr6               305636 57 + 123392446 I
e dasNov3.JH580105              531 5328 -     45298 I

a score=865101.000000
s hg38.chr6_GL000254v2_alt  1422853 62 +   4827813 GGTGCTCAG-TCTGGCTAG-GAAGTTCATGA-CTAGTTGTCATTTGCCTTCCATAACCAGATGGT
s panTro5.chr6             30296109 62 + 175400573 GGTGCTCAG-TCTGGCTAG-GAAGCTCATGA-CTAGCTGTCATTTGCCTTCCATAACCAGATGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30526572 62 + 173848474 GGTGCTCAG-TCTGGCTAG-GAAGCTCATGA-CTAGCTGTCATTTGCCTTCCATAACCAGATGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     233669 62 +   2037526 GGTGCTCAG-TCTGGCTAG-GAAGCTCATGA-CTAGTTGTCATTTGCCTTCCATAACCAGATGGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74907074 62 + 122973662 GGTGCTCAG-TCTGGCGAG-GAGGCTCATGA-CTAGTTGTCATTTGCCTTCCATAACCAGATGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30786099 62 + 172585720 GGTGCTCAG-TCTGGCTAG-GAAGCTCATGA-CTAGTTGCCATTTACCTTCCATAACCAGATAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30075622 62 - 170955103 GGTGCTCAG-TCTGGCTAG-GAAGCTCATGA-CTAGTTGCCATTTACCTTCCATAACCAGATAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     324932 62 +   1495729 GGTGCTCAG-TCTGGCTAG-GAAGCTCATGA-CTAGTTGTCATTTACCTTCCATAACCAGATGGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     422814 62 -    863181 GGTGCTCAG-TCTGGCTAG-GAAGCTCATGA-CTAGTTGTCATTTACCTTCCATAACCAGATGGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29574854 62 -  71996105 GGTGCTCAG-TCTGACTGG-GAAGTTCATGA-CTAGCTGTCATTTACCTTTCATAACCAGATGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     260692 62 -    735854 GGTGCTCAG-TCTGGCTAG-GAAGCTCATGA-CTAGTTGTCATTTACCTTCCATAACCAGATGGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     213008 62 -   1829203 GGTGCTTAG-TCTGGCTAG-GAAGCTCATGA-CTAGTTGTCATTTACCTTCCATAACCAGATGGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30385660 62 + 171630274 GGTACTCAG-TCTGGCTAG-GAAGCTCGTGA-CTAGTTGTCGTTTGCCTTCCATAACCAGGTGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           209360 62 +    515838 GGTACTCAG-TCTGGCTAG-GAAGCTCGTGA-CTAGTTGTCGTTTGCCTTCCATACCCAGATGAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     841194 62 -   1771730 GGTACTCAG-TCTGGCTAG-GAAGCTCGTGA-CTAGTTGTCGTTTGCCTTCCATAACCAGATGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     326933 62 -    383796 GGTACTCAG-TCTGGCTAG-GAAGCTCGTGA-CTAGTTGTCGTTTGCCTTCCATAACCAGATGAT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               305693 60 + 123392446 GGTGCTCAG-TCTGGCTGGAGAAGCTCATGG-CTAGTTGTTAGTTTCCCTCCATAACTAGAC---
i micMur3.chr6             I 57 C 0
s proCoq1.NW_012149775v1     109995 62 -   1411461 -GTGCTCCA-TCTGGCTGGAGAAGCTCATGA-CTAGTTGTTGTTTTCCCTCTATAACTAGACGAT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           258137 64 +  18854210 GGCATTCAGTTCTCGCTGGAGGAGCTCATGA-CTAGCTGTCATTTTGCTTTTATACCTAGGTGAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58049198 62 -  94987271 GGAGCTCTT-TCTGTTGCA-GAAGTGCACAA-CTAGCTGTTGCTTCCTGTCTGTGTCCAGGTGGC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26299337 61 +  26524999 GGCATTTAG---GGGCTCA-AGAGCTCATGGTCCCATTGTCACATGCCTTCTGTCAGCAGATGCT
i canFam3.chr35            C 0 C 0
e dasNov3.JH580105              531 5328 -     45298 I

a score=2744331.000000
s hg38.chr6_GL000254v2_alt  1422915 194 +   4827813 GAGGATTCCTGCTAACAAAGCATCAGCTCAACCTTTACGTCCAGGTTACAATGAGTTC---ATACCTAATGGTTCCAGGACAC-CAGTAAGGGAAAAGGCATTTGGAGACAGACTCTGCCTGGAAACATCTCACTTCTCAAGACCTTCTCCCTCCCTTTCCAGAATCCCTAACAACTCTATACT-----TGATGCTCTAATCA
s panTro5.chr6             30296171 194 + 175400573 GAGGATTCCTGCTAACAAAGCATCAGCTCAACCTTTACGTCCAGGTTACAATGAGTTC---ATACCTAATGGTTCCAGGACAC-CAGTAAGGGAAAAGGCATTTGGAGACAGACTCTGCCTGGAAACATCTCACTTCTCAAGACCTTCTCCCTCCCTTTCCAGAATCCCTAACAACTCTATACT-----TGATGCTCTAATCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30526634 194 + 173848474 GAGGATTCCTGCTAACAAAGCATCAGCTCAACCTTTACGTCCAGGTTACAATGAGTTC---ATACCTAATGGTTCCAGGACAC-CAGTAAGGGAAAAGGCATTTGGAGACAGACTCTGCCTGGAAACATCTCACTTCTCAAGACCTTCTCCCTCCCTTTCCAGAATCCCTAACAACTCTATACT-----TGATGCTCTAATCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     233731 193 +   2037526 GAGGATTCCTGCTAACAAAGCATCAGCTCAACCTTTACGTCCAGGTTACAATGAGTTC---ATACCTAATGGTTCCAGGACAC-CAGTAAGGGAAAAGGCATTTGGAGACAGACTCTGCCT-GAAACATCTCACTTCTCAAGACCTTCTCCCTCCCTTTCCAGAATCCCTAACAACTCTATACT-----TGATGCTCTAATCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74907136 194 + 122973662 GAGGATTCCTGCTAACAAAGCATCAGCTCAGCCTTTACGTCCTGGTTACAATGAGTTC---ATACCTAATGGTTCCAGGACAC-CAGTAAGGGAAAAGGCATTTGGAGATAGACTCTGCCAGGAAACATCTCACTTCTCAAGACCTTCTCCATCCCTTTCCAGAATCCTTAACAACTCTACACT-----TGATCCTCTAATCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30786161 194 + 172585720 GAGGATTCCTGCTAACAAAGCATCAGCTCAGCCTTTACACCCTGGTTACAATGAGTTC---ATACCTAATGGTTCCAGGACAC-CAGTAAGGGAAAAGGCATTTGGAGACAGACTCTGCCTGGAAACATCTCACTTCTCAAGACCTTCTCCCTCCCTTTCCAGAATCCCTAACCACTCTACACT-----TGATCCTCTAATCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30075684 194 - 170955103 GAGGATTCCTGCTAACAAAGCATCAGCTCAGCCTTTACACCCTGGTTACAATGAGTTC---ATACCTAATGGTTCCAGGACAC-CAGTAAGGGAAAAGGCATTTGGAGACAGACTCTGCCTGGAAACATCTCACTTCTCAAGACCTTCTCCCTCCCTTTCCAGAATCCCTAACCACTCTACACT-----TGATCCTCTAATCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     324994 194 +   1495729 GAGGATTCCTGCTAACAAAGCATCAGCTCAGCCTTTACGTCCTGGTTACAATGAGTTC---ATACCTAATGGTTCCAGGACAC-CAGTAAGGGAAAAGGCATTTGGAGACAGACCCTGCCTGGAAACAACTCACTTCTTAAGACCTTCTCCCTCCCTTTCCAGAATCCCTAACCACTCTACACT-----TGATCCTCTAACCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     422876 194 -    863181 GAGGATTCCTGCTAACAAAGCATCAGCTCAGCCTTTACGTTCTGGTTACAATGAGTTC---ATACCTAATGGTTCCAGGACAC-CAGTAAGGGAAAAGGCATTTGGAGACAGACTCTGCCTGGAAACATCTCACTTCTTAAGACCTTCTCCCTCCCTTTCCAGAATCCCTAACCACTCTACACT-----TGATCCTCTAACCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29574916 194 -  71996105 GAGGATTCCTGCTAACAAAGCATCAGCTCAGCCTTTACGTCCTGGTTACAATGAGTTC---ATACCTAATGGTTCCAGGACAC-CAGTAAGGGAAAAGGCATTTGGAGACAGACTCTGCCTGGAAACATCTCACTTCTCAAGACCTTCTCCCTCCCTTTCCAGAATCCCTAACCACTCTACACT-----TGATCCTCTAATCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     260754 197 -    735854 GAGGATTCCTGCTAACAAAGCATCAGCTCAGCCTTTACGTCCTGGTTACAATGAGTTCAGGACGCCTAATGGTTCCAGGACGC-CAGTAAGGGAAAAGGCATTTGGAGACAGACTCTGCCTGGAAACATCTCACTTCTCAAGACCTTCTCCCTCCCTTTCCAGAATCCCTAACCACTCTACACT-----TGATCCTCTAATCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     213070 134 -   1829203 GAGGATTCCTGCTAACAAGGCATCAGCTCAGCCTTTACGTCCTGGTTACAATGAGTTC---ATACCTAATGGTTCCAGGAC-------------------------------------------------------------ACCTTCTCCCTCCCTTTCCAGAATCCCTAACCACTCTACCCT-----TGATCCTCTAATCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30385722 194 + 171630274 GAGGATTCCTGCTAACCAAGCATCAGCTCAGCCTTTATATCCTGGTTACAATGAGTTC---ATACCTAATGGTTCCAGGATGC-CAGTAAGGGAAAAGGCATTTGGAGACAGACTCTGCCAGGGAACATCTCACTTCTCAATAACTTCTCCCTCCCTTTCCATAATCCCTAACAACTCTAAACT-----TGATCCCCTAATTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           209422 193 +    515838 GAGGA-TCCTGCTAACAAAGCATCAGCTCAGCCTTTACGTCCTGGTTACAATGAGTTC---ATACCTAATGGTTCCAGGACAC-CAGTAAGGGAAAAGGCATTTGGAGACAGACTCTGCCAGGGAACATCTCACTTGTCAATAATTTCTCCCTCCCTTTCCATAATCCCTAACAACTCTAAACT-----TGATCCCCTAATTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     841256 194 -   1771730 GAGGATTCCTGCTAACAAAGGATCAGCTCAGCCTTTACGCCCTGGCTACAATGAGTTC---ATACCTAATGGTTCCAGGACAC-CGGTAAGGGAAAAGGCATTTGGAGACAGACTCTGCCAGGGAACATCTCACTTCTCAATAGCTTCTCCCTCCCTTTCCATAATCCCTAACAACTCTAAACT-----TGATCCCCTAATTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     326995 194 -    383796 GAGGATTCCTGCTAACAACGCATCAGCTCAGCCTTTATGTCCTGGTTACAATGAGTTC---ATACCTAATGGTTCCAGGACAC-CAGTAAGGGAAAAGGCATTTGGAGACAGACTCTGCCAGGGAACATCTCACTTCTCAATAACTTCTCCCTCCCTTTCCATAATCCCTAACAACTCTAAACC-----TGATTCCCTAATTA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               305753 192 + 123392446 AAGGATTCCTGCTAGCAAAGCTTCCGCTTGGCCTTCACACCCTGGTTACCGTGAGTTC---ACATCTGATGGTTCTAGGACAC-CAGTAAGGGAAAAGGCATTTGGAGGCAGACTCTGCCAGGAAATATCTTACTCCTCAAGACCTTTTCCCTGTC--TCTGGAATCCCTAATAACTCTACACT-----TGATCCTTTAATCC
i micMur3.chr6             C 0 I 143
s proCoq1.NW_012149775v1     110057 191 -   1411461 GAGGATTCCTGCTAACAAAGCTTCCGCTCAGCCTTCATGCCCTGGTTACCATGAATTC---ACATCTAATGGTTCTGGGACAC-CAGTAAGGGAAAAGGCATTTGGAAGGAGACTGTGCCA-GAAACATCTCACTCCTCAAGACCTTTTCCCTCTC--TCCGGAATCGCTAACCACTCTACACT-----TGATCCTTTAATCC
i proCoq1.NW_012149775v1   C 0 I 1
s otoGar3.GL873550           258201 192 +  18854210 GGGGACTCCTGCTAACAAAGCTTTAGCTTAGCCTTCATGCCCTGGTTACCATGGGTTC---ATATCTAATGGTTCTAGGACTT-TAGTAAGGGAAAAGGCATTTGGAGGTAGACTCTGCCAGGAAACATTTCACTCCTCAAGACCTTTTCCTTCTC--TTCAGAATCCCTAACAGCTCTATACT-----TGATCTTTTAATCC
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58049260 181 -  94987271 GAGGACTTC-----------------CTCAACCTGAACAGCCTGCTTTCCACATTTTC---ACACCTGATGGTTCTAGGACAT-GGGTAAAGGAAAAGGCATTTGGGCCTGGACTCTGCCA-GGAACATTTTACTTCTCAAGACTTTCTTCCTCCCTCTCTAGATGCCCTAATGAGCTTACCTTATTAACAATCCTCTGATCC
i mm10.chr17               C 0 I 1
s canFam3.chr35            26299398 163 +  26524999 GAGGCTTT-----------------GCTCTGCCCATGAGGTGTGGTTCCGGTGAGCTC---ACACCTAGCAGTTCTAGGATACATAGCACGGGGAACAGCCTTCGCAGGTGAATGCGGCCAGG--ATGTCTCACTTCCTAGGACTCTCTCCCTCTC--ACCAGAATCCTTGACAACCAGGC--------TAATCC--------
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105             5859 171 -     45298 GGGGACTCCAGCCCGC---GCTCCAGCGCGCCCTGGGCGCCCGGCTGCC--CGCGTCC---ACTCCCCATGGTTCCAGGGCAG-GCTCGAGGCTGCCGGCCGCTG-----------TGCCCGGAGACGTCCCACTTCCC--GACCTTCTCCCCCTC--GCCAGG--CCCCAGGGACTCTACGC------GGGTCCCCTGTCGA
i dasNov3.JH580105         I 5328 C 0

a score=1747920.000000
s hg38.chr6_GL000254v2_alt  1423109 142 +   4827813 CC-ACTGAGTTCATTCTATTTCCAGA-----------GAGCCAGAAGGGTGGATGTGAT--TTTACGTGTGTCAGCTTGGCTTGGCTTGATCCAGTTGACCATGACGGGATCCTGTCTCTCTGCTAGGATCCACATCTTC--CTTCCTTAATGTAGGT
s panTro5.chr6             30296365 142 + 175400573 CC-ACTGAGTTCATTCTATTTCCAGA-----------GAGCCAGAAGGGTGGATGTGAT--TTTACGTGTGTCAGCTTGGCTTGGCTTGATCCAGTTGACCATGACGGGATCCTGTCTCTCTGCTAGGATCCACATCTTC--CTTCCTTAATGTAGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30526828 142 + 173848474 CC-ACTGAGTTCATTCTATTTCCAGA-----------GAGCCAGAAGGGTGGATGTGAT--TTTACGTGTGTCAGCTTGGCTTGGCTTGATCCAGTTGACCATGACGGGATCCTGTCTCTCTGCTAGGATCCACATCTTC--CTTCCTTAATGTAGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     233924 142 +   2037526 CC-ACTGAGTTCATTCTATTTCCAGA-----------GAGCCAGAAGGGTGGATGTGAT--TTTACGTGTGTCAGCTTGGCTTGGCTTGATCCAGTTGACCATGACGGGATCCTGTCTCTCTGGTAGGATCCACATCTTC--CTTCCTTAATGTAGGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74907330 142 + 122973662 CC-CCTGAGTTCATTCTATTTCCAGA-----------GAGCCAGAAGGGTGGATGTGAT--TTTATGTGTGTCAGCTTGGCTTGGCTTGTTCCAGTTGACCATGACAAGATCCTGTCTCTCTGCTAGGATCCACATCTTC--CTTCCTTAATGTAGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30786355 142 + 172585720 CC-CCCGAGTTCATTCTATTTCCAGA-----------GAGCCGGAAGGGTGGATGTGAT--TTTATGTGTGTCGGCTTTGCTTGGCTTGTTCCAGTTGACCATGACAGGATCCTGTCTCTCTGCTAGGATCCACCTCTTC--CTTCCTTAACATAGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30075878 142 - 170955103 CC-CCCGAGTTCATTCTATTTCCAGA-----------GAGCCGGAAGGGTGGATGTGAT--TTTATGTGTGTCGGCTTTGCTTGGCTTGTTCCAGTTGACCATGACAGGATCCTGTCTCTCTGCTAGGATCCACCTCTTC--CTTCCTTAACATAGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     325188 142 +   1495729 CC-CCCGAGTTCATTCTATTTCCAGA-----------GAGCCGGAAGGGTGGATGTGAT--TTTATGTGTGTCGGCTTTGCTTGGCTTGTTCCAGTTGACCATGACGGGATCCTGTCTCTCTGCTAGGATCCACCTCTTC--CTTCCTTAACATAGGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     423070 142 -    863181 CC-CCCGAGTTCATTCTATTTCCAGA-----------GAGCCGGAAGGGTGGATGTGAT--TTTATGTGTGTCGGCTTTGCTTGGCTTGTTCCAGTTGACCATGACAGGATCCTGTCTCTCTGCTAGGATCCACCTCTTC--CTTCCTTAACATAGGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29575110 142 -  71996105 CC-CCCGAGTTCATTCTATTTCCAGA-----------GAGCCGGAAGGGTGGATGTGAT--TTTATGTGTGTCAGCTTTGCTTGGCTTGTTCCAGTTGACCATGACAGGATCCTGTCTCTCTGCTAGGATCCACCTCTTC--CTTCCTTAACATAGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     260951 142 -    735854 CC-CCTGAGTTCATTCTATTTCCAGA-----------GAGCCGGAAGGGTGGATGTGAT--TTTATGTGTGTCGGCTTTGCTTGGCTTGTTCCAGTTGACCATGACAGGATCCTGTCTCTCTGCTAGGATCCACCTCTTC--CTTCCTTAACATAGGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     213204 142 -   1829203 CC-CCCAAGTTCATTCTATTTCCAGA-----------GAGCCGGAAGGGTGGATGTGAT--TTTATGTATGTCGGCTTTGCTTGACTTGTTCCAGTTGACCATGACAGGTTCTTGTCTCTCTGCTAGGATCCACATCTTC--CTTCCTTAACATAGGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30385916 130 + 171630274 CCTTCCAAAG-------------AGA-----------GAGCTGGAAGGGTGGGTGTGAT--TTTCTATGTGTCGGCTTGGCTTTGCTTGCTCCAGTTGATCATGATGGGATCCTGTCTCTCTGCTAGGATCCACATCTTC--CTTCCTTAATGTAGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           209615 143 +    515838 CCTTCCAAATTCATTCTATTTCCAGA-----------GAGCTGGAAGGGCGGGTGTGAT--TTTATGTGTGTCGGCTTGGCTTTGCTTGCTCCAGTTGATCATGATGGCATCCTGTCTCTCTGCTAGGATCCACATCTTC--CTTCCTTAATGTCGGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     841450 143 -   1771730 CCTTCCAAGTTCGTTCTATTTCCAGA-----------GAGCTGGAAGGGCGGGTGTGAT--TTTATGTGTGTTGGCTTGGCTTTGCTTGCTCCAGCTGATCATGATGGGATCCTGTCTCTCTGCTAGGATCCACATCTTC--CTTCCTTAATGTAGGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     327189 143 -    383796 CCTTCCAAGTTCGTTCTATTTCCAGA-----------GAGCTGGAAGGGCGGGTGTGAT--TTTATGTGTGTCGGCTTGGCTTTGCTTGCTCCAGTTGATCATGATGGGATCCTGTCTCTCTGCTAGGATCCACATCTTC--CTTCCTTAATGTAGGT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     110249 143 -   1411461 CC-CTTGGGTTCATTGTATCTCTGGA-----------GAGCTGGAAGGGTGGATATGAG--TTTGTGTGTGCTGGCTTGGCTTGGCTTGCTGCAGTTGACCATGGCTGCATCCTGCCTCTGGCTTAGCATCCACGTCTTCTCCTTGCTTCACACAGG-
i proCoq1.NW_012149775v1   I 1 C 0
s otoGar3.GL873550           258394 139 +  18854210 CT-TTTGGGTTCACTCTATCTCTGGA-----------GAGCCGGAAGGGTGGATGTGAT--TTTGTGTGTG-----TTGGCTTGGCTTGCTGTAGTTGACCGTGACTGCATCCTTCCTCTCTGTTAGCATCCACGTCTTCTTCTTGTTTAATGTAGGT
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58049442 126 -  94987271 CC-TCAGAGTTCATTCTATGACCATAAATGGAAAGTGGAGTTgagagagagggagaga------gagagagaTGACTTGGCTTGGTTTGCTCCAATTGACTGTAACAGAATCCCGCC-------------------------CCTCCTTAAAGCAGGT
i mm10.chr17               I 1 C 0
s canFam3.chr35            26299561 119 +  26524999 ---------CTCATTCTATCTGCAGA-----------GAGCTGGATGGGTGGACGTGCCTGTTGGTGTGTGTTGGCTTGGCTTGGCTTG---CCGGTGACAGTGACTGCA---CGTGCCCTTGTTTG-----------TG--CCACACTAACACCAGT
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105             6030 131 -     45298 CC-CTCGGGTTCGCGCCAGCTCCGGG-----------GAGGCGGAAGC-TGGAGGTGGG--------CGCGCTGGTCTGGCTTCGCTTGCTCCAGG-GACCATGACGA-----CGCCTCCCTGCTGGCGTCGACGCGCTCCCCTCCCCCGTTCCAGGA
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               305945 143 + 123392446 I

a score=4745124.000000
s hg38.chr6_GL000254v2_alt  1423251 353 +   4827813 GTCTCCTAAATAACTGTTCCCACCCCTTTCCAACTCCTTCCAGGAT--TCCTACTTGTGGTGTTGTGGAGTGTGACAGCTTGATACCCATGCATGGCACTAGGGAATGTCAGAGGTGGGACAGGCCTTGACCCATCCC---tt-----cttttccttctc---ttca-ttttttt-cttctatcctttcatttATCCTTCAGTC--TCTCT---CCTCCATATTAGCAACATCCTCATGCTTTT-AAAAGCCCCACTAGTCTTTAGAAGCTTTCC-AGAGGGAGAGATAAGTATGATAGAGGAGTTTGGGAGACTGATCACAGGACA-GTCATGGTCCCTGCCCTTAGGAAGTGTGATAAGGCAGGTAAAGTGTAT
s panTro5.chr6             30296507 353 + 175400573 GTCTCCTAAATAACTGTTCCCACCCCTTTCCAACTCCTTCCAGGAT--TCCTACTTGTGGTGTTGTGAAGTGTGACAGCTTGATACCCATGCATGGCACTAGGGAATGTCAGAGGTGGGACAGGCCTTGACCCATCCC---tt-----cttttccttctc---ttca-ttttttt-cttctatcctttcatttATCCTTCAGTC--TCTCG---CCTCCATATTAGCAACATCTTCATGCTTTT-AAAAGCCGCACGAGTCTTTAGAAGCTTTCC-AGAGGGAGAGATAAGTATGATAGAGGAGTTTGGGAGACTGATCACAGGACA-GTCATGGTCCCTGCCCGTAGGAAGTGTGATAAGGCAGGTAAAGTGTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30526970 353 + 173848474 GTCTCCTAAATAACTGTTCCCACCCCTTTCCAACTCCTTCCAGGAT--TCCTACTTGTGGTGTTGTGAAGTGTGACAGCTTGATACCCATGCATGGCACTAGGGAATGTCAGAGGTGGGACAGGCCTTGACCCATCCC---tt-----cttttccttctc---ttca-ttttttt-cttctatcctttcatttATCCTTCAGTC--TCTCG---CCTCCATATTAGCAACATCTTCATGCTTTT-AAAAGCCGCACGAGTCTTTAGAAGCTTTCC-AGAGGGAGAGATAAGTATGATAGAGGAGTTTGGGAGACTGATCACAGGACA-GTCATGGTCCCTGCCCGTAGGAAGTGTGATAAGGCAGGTAAAGTGTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     234066 353 +   2037526 GTCTCCTAAATAACTGTTCCCACCCCTTTCCAACTCCTTCCAGGAT--TCCTACTTGTGGTGTTGTGGAGTGTGACAGCTTGATACCCATGCATGGCACTAGGGAATGTCAGAGGTGGGACAGGCCTTGACCGATCCC---TT-----CTTTTCCTTCTC---TTCA-GTTTTTT-CTTCTATCCTTTCATTTATCCTTCAGTC--TCTCT---CCTCCATATTAGCAACATCCTCATGCTTTT-AAAAGCCCCACGAGTCTTTAGAAGCTTTCG-AGAGGGAGAGATAAGTATGATAGAGGAGTTTGGGAGACTGATCACAGGACA-GTCATGGTCCCTGCCCTTAGGAAGTGTGATAAGGCAGGTAAAGTGTAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74907472 328 + 122973662 GCCTCCTAAATAACTGTTCCCACCCCTTTCCAACTCCTTCCAGGAT--TCCTAC-TGTGGTGTTGTGGAGTGTGACAGCTCGATACCCATGCATGGCACTAGGGAA---------------------AGACCCATCCC---tt-----cttttccttctc---ttca-ttttttt-cttctatcctttcatttATCCTTCAGTC--TCTCT---CCTCCATATTAGCAACATCCTTATGCTTTT-AAAAGCCCCACAAGTCTTTAGAAGCTTTCC-AGAGGGAGAGATAAGTATGA-AGAGGAGTTTGGGAGACTGATCACAGGACA-GTCATGGTCCCCGCCCTTAGGAAGTGTGATAAGGCAGGTAAA--GTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30786497 353 + 172585720 GCCTCCCAAATAACTGTTCCCACCCCTTTCCACCTCCTTCCAGGAC--TCCTACTTGTGGTGTTGTGGAGTGTGACAGCTCGATACCCATGCACGGCACTAGGGAATGTTAGAGGTGGGACAGGCCTTGACCCATCCC---TT-----CTTTTCCTTCTC---TTCA-TTTTTTTCCTTCTATCCTTTTATTTATCCTTCAGTT--TCTCT---CCTCCAAATTAGCAACATCCTCATGCTTTT-AAAAGCCCCACAAGTCTTTAGAAGCTTTCA-AGAGGGAGAGATAAGTATGA-GGAGGAGTTTGGGAGACTGATCACAGGACA-GTCATGGTTCCTGCCCTTAGGAAGTGTGATAAGCCAGGTAAAGTGTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30076020 353 - 170955103 GCCTCCCAAATAACTGTTCCCACCCCTTTCCACCTCCTTCCAGGAC--TCCTACTTGTGGTGTTGTGGAGTGTGACAGCTCGATACCCATGCACGGCACTAGGGAATGTTAGAGGTGGGACAGGCCTTGACCCATCCC---TT-----CTTTTCCTTCTC---TTCA-TTTTTTTCCTTCTATCCTTTTATTTATCCTTCAGTT--TCTCT---CCTCCAAATTAGCAACATCCTCATGCTTTT-AAAAGCCCCACAAGTCTTTAGAAGCTTTCA-AGAGGGAGAGATAAGTATGA-GGAGGAGTTTGGGAGACTGATCACAGGACA-GTCATGGTTCCTGCCCTTAGGAAGTGTGATAAGCCAGGTAAAGTGTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     325330 353 +   1495729 GCCTCCCAAATAACTGTTCCCACCCCTTTCCACCTCCTTCCAGGAC--TCCTACTTGTGGTGTTGTGGAGTGTGACAGCTCGATACCCATGCATGGCACTAGGGAATGTTAGAGGTGGGACAGGCCTTCACCCATCCC---TT-----CTTTTCCTTCTC---TTCA-TTTTTTTCCTTCTATCCTTTTATTTATCCTTCAGTT--TCTCT---CCTCCAAATTAGCAACATCCTCATGCTTTT-AAAAGCCCCACAAGTCTTTAGAAGCTTTCA-AGAGGAAGAGATAAGTATGA-GGAGGAGTTTGGGAGACTGATCACAGGACA-GTCATGGTTCCTGCCCTTAGGAAGTGTAATAAGCCAGGTAAAGTGTAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     423212 353 -    863181 GCCTCCCAAATAACTGTTCCCACCCCTTTCCACCTCCTTCCAGGAC--TCCTACTTGTGGTGGTGTGGAGTGTGACAGCTCGATACCCATGCATGGCACTAGGGAATGTTAGAGGTGGGACAGGCCTTGACCCATCCC---TT-----CTTTTCCTTCTC---TTCA-TTTTTTTCCTTCTATCCTTTTATTTATCCTTCAGTT--TCTCT---CCTCCAAATTAGCAACATCCTCATGCTTTT-AAAAGCCCCACAAATCTTTAGAAGCTTTCA-AGAGGGAGAGATAAGTATGA-GGAGGAGTTTGGGAGACTGATCACAGGATA-GTCATGGTTCCTGCCCTTAGGAAGTGTGATAAGCCAGGTAAAGTGTAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29575252 349 -  71996105 GCCTCCCAAATAACTGTTCCCACCCCTTTCCACCTCCTTCCAGGAC--TCCTACTTGTGGTGTTGTGGAGTGTGACAGCTCGATACCCATGCATGGCACTAGGGAATGTTAGAGGTGGGACAGGCCTTGACCCATCCC---TT-----CTTTTCCTTCTC---TTCA-TTTTTTTCCTTCTATCCTTTTATTTATCCTTCAGTT--TCTCT---CCTCCAAATTATCAACATCCTCATGCTTTT-AAAAGCCCCACAAGTCTTTAGAAGCTTTCA-AGAGG----GATAAGTATGA-GGAGGAGTTTGGGAGACTGATCACAGGACA-GTCATGGTTCCTACCCTTAGGAAGTGTGATAAGCCAGATAAAGTGTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     261093 353 -    735854 GCCTCCCAAATAACTGTTCCCACCCCTTTCCACCTCCTTCCAGGAC--TCCTACTTGTGGTGGTGTGGAGTGTGACAGCTCGATACCCATGCATGGCACTAGGGAATGTTAGAGGTGGGACAGGCCTTGACCCATCCC---TT-----CTTTTCCTTCTC---TTCA-TTTTTTTCCTTCTATCCTTTTATTTATCCTTCAGTT--TCTCT---CCTCCAAATTAGCAACATCCTCATGCTTTT-AAAAGCCCCACAAATCTTTAGAAGCTTTCA-AGAGGAAGAGATAAGTATGA-GGAGGAGTTTGGGAGACTGATCACAGGACA-GTCATGGTTCCTGCCCTTAGGAAGTGTGATAAGCCAGGTAAAGTGTAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     213346 353 -   1829203 GCCTCCCAAATAACTGTTCCCACCCCTTTCCAACTCCTTCCAGGAC--TCCTACTTGTGGTGTTGTGGAGCGTGACAGCTCGATACCCATGCATGGCACTAGGGAATGTTAGAGGTGGGACAGGCCTTGACCCATCCC---TT-----CTTTTCCTTCTC---TTCA-TTTTTTTCCTTCTATCCTTTTGTTTATCCTTCAATT--TCTCT---CCTCCAAATTAGCAACATCCTCATGCTTTT-AAAAGCCCCACAAGTCTTTAGAAGCTTTCA-AGAGGGAGAGATAAGTATGA-GGAGGAGTTTGGGAGACTGATCACAGGACA-GTCATGGTTCCTGCCCTCAGGAAGTGTGATAAGCCAGGTAAAGTGTAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30386046 346 + 171630274 GCCTCCCCAATAACTGTTCCCACCCCTTTCCAGCTTCTTCCAGGAT--TCCTACTTGTGGTGTTGTGGAGTGTGACAGCTTGATACCCATGCATGGC----GGGA--GTTAGAGGTGGGAGAGGTCTTGACCCAtccc---tt-----tcttttcttctc---ttcc-tcttctttcttctttccttttatttatcctttAGTG--TATCT---CTTTCATATTAGTAACATCCTCATGCTTTT-TAAAACCCTGCAAGTTTTTAGAATCTTTGA-AGAGGGAGAGAGAAGTATGA-AGAGGT-TTTGGGAAACTAATGAGAGGACA-GTCATGGTCCCTGCCCTTAGGAAGTGTGATAAGGCAAGTAAAGAGCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           209758 335 +    515838 GCCT------------------CCCCTTTCCGACTCCTTCCAGGAT--TCCTACTTGTGGTGTTGTGGAGTGTGGCAGCTTGATGCCCATGCATGGCACTAGGGAATGTTAGAGGTGGGAGAGGTCTTGACCCATCCC---TT-----TCTTTTCTCCTC---TTCC-TCTTCCGTCTTCTCTCCTTTTATTTATCCTTCATTG--TGTCT---CCTCCATGTTAGTAACATCCTCATGCTTTT-CAAAACCCTGCAAGTTTTTAGAATCTTTCA-AGAGGGAGAGAGAAGTATGA-AGAGGTGTTTGGGAAACTAATGAGAGGACG-GTCATGGTCCCTGCCCTTAGGAAGTGTGATAAGGCAGGTAAAGTGTAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     841593 352 -   1771730 GCCTCCCCAATAACTGTTCCCACCTCTTTCCAACTCTTTCCAGGAT--TCCTACTTGTGGTGTTGTGGAGTGTGACAGCTTGGTACCCGTGCATGGCACTAGGGAATGTTAGAGGTGGGAGAGGTCTTGACCCATCCc---tt-----tcttttcttctc---ttcc-tcttctttcttctctccttttatttatccttcgttg--tgtct---CCTCCATGTTAGTAACATCCTCATGCTTTT-CAAAACCCTGCAAGTTTTTAGAATC-TTCA-AGAGGGAGAGAGAAATATGA-AGAGGTGTTTGGGAAACTaatgagagaaca-gtcatggtccctgcccttaggaagtgtaATAAGGCAGGTAAAGTGTAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     327332 354 -    383796 GCCTCCCCAAAAACCGTTCCCACCCCTTTCCAACTCCTTCCAGGAT--TCCTACTTGTGGTGTTGTGGAGTGTGACAGCTTGATACCCATGCATGGCACTAGGGAATGTTAGAGGTGGGAGAGGTCTTGACCCATCCC---TT-----TCTTTTCTTCTC---TTCC-TCTTCTTTCTTCTCTCCTTTTATTTATCCTTCAGTG--TATCT---CCTCAATATTAGTAACATCCTCATGCTTTTAAAAAACTCTGCAAATTTTTAGAATCTTTTA-AGAGGGAGAGAGAAGATTGA-AGAGGTGTTTGGGAAACTAATGAGAGGACA-GTCATGGTCCCTGCCCTTAGGAAGTGTGATAAGGCAGGTAAAGTGTAC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               306088 355 + 123392446 GCCACCCATGTAACTGTCCCTAACCCTTCCCAACTCCTTCCAGGAC--GTCTGCTTGTGGTGTTGCAGAATGTTACAGCTCAATACCCATGCATGGCACC-AGGGATGTTAGGGGCAGGAGAGGCCTTAGCCCAtccc---ttcctttctttcccttctc---ttcc--ttttgtccttctctccttttatctatcctccagtc--tctct---CCTCTGTGTCAGTAACATCCTCAGACTTTT-AAAAAGTCCACAAGTCTTTAGGAGCTTCCA-GGGGAGAGAGGTAGGAATGA-AGAGGTGTTTGGGAGACCAATGACAGGACA-GTCATGGT-CCTGCCCTTGGGAAGTGTGATGAGGCAGGTAAAGTATAT
i micMur3.chr6             I 143 I 770
s proCoq1.NW_012149775v1     110392 359 -   1411461 GCCGCCCAGGTAACTGTTCCCACCCCTTTCCAACTCCTTCCAGGAT--GTCTCCTTGTGGTGTTGCGGAATGTTACAGCTCAACACCCACGCATGGCACTGGGGGACGTTAGGGGTGGGAGAGGCCTTAGCCCTTCCC---TTCCTTCCTTTTCCTtctc---ttcc-tttttgtccttctctccctttgtctatcctctattc--tctct---cctctGTATCAGTAACATCCCCAGACTTTT-AAAAAGTCCACAAGTCTTTAGGGGCTTCCAGGGGGGGAGAGGTAGGTAAGA-AGAGGTGTTTGGGAGACCGATGACAGGACA-GTCATGGTCCCTGCCCTTGGGAAGTGTGACGAGGCAGGTAAAGTATAT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           258533 356 +  18854210 GCCTCCCATGTAACTGTTCCCACCCCTTTCCTACTTCTTCCAGGAT--GCCTGCTTCTGATGTTGTGGAATATTATATCTCAATATCCATCCATGGC-CT-GGGGATATTAGAGGTGGGAGAGATCTTAGCCCAtccc---ttcctttcttttccttctc---ttctttttttattcttctctccttttgtttatcctccagtc--tctct---tctctGTATCAGTCATATCTCTGTACTTTT--AAAAGCCCACAGGTCTTTAGGAGCCTCCA-AGGGGGAAAGGTAGGTATGT-AGAAGTGTTTGGGAGACCAATGACAGGACA-ATCATGGTGCCTGCCCTTTGGAACTGTGATAAGGCAGGTAATGTGTAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58049568 335 -  94987271 GCCTCCTACACAATTGTTCCCACCCCTTT-----------CAGGATAGGCATACTTATGGTGCTG-----TGTTACAGCACAGTACCTCTGCTTGCTACTAAGGAGTGTTCGAAGTCAGACAGGCT----CCTTCCTT---TT-----CTTTCTCCTTCC---TGCT-TTTATTTTCTTCACTCCTTTTGTTTATCCCTCAGTCTGTCTTT---CCTCTGTATCAGTAACAT-TTCATCTTTTTAAAAAAGTCTCTAAGTGTTTA--AGCCTTCA-AGGAGGGGAGGTAGGCATGA-AGTGGTGTTTGGAAGAATGATCATAGAATA-GTCATAGTCCCTGCCCTTAGAAAGTGCGATAAGGTGGGTGAAATATAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26299680 304 +  26524999 GCCTCCCATGCAGTCGTGCCCA-CCCTTCCCAGCTGC-TCCAGCCT--GTTCCTGTGCACTCATGTGGAATGTG------CAGTACCCACACACAA-GCCAGGGAGTACTGGGAGG---------CTCAGCCCATCCACAGTC-----TGTTTCCTTCTC---TTCC-TGCCTCT--TTCTAG---TTTGTTTGTTCCTCAACC--GGTCTCTGCCTCCATTTCAGTGACATCCCTGTCCTTTC-TGAGAGTCCACCCATCTGCAGGAGCCTTCT-AGGAGGAGAGGTCAGTACAC-AGCAGTGCTTGGAAGACT-----------------------TTGCCTTGAGGGAGTGTGATGAGGGAGA----------
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105             6161 255 -     45298 GCCTCCC--GTAGCCACTCCTAGCCCTTCCCGGCGC------GGCC------------------GCGGCGTGGGCCAGCTGGATACCCACGCTTGGCACC-GGGGGTGCTGGGGGGCGGGCAGGCTTAGCCCCGCCCC---TA-----CTTCTCCTTCTTCTGTTCC-TATATTTCCTTC--------------------------TCTCC---CCTCCATATCCAGGGACCTCTTATCCTTGT-AAAGATCC------------------TTGA-ATAGGAAAAA------CTGA------------------------CAGGACACAGCCTGGT-CCTGCCA--GGGGACTGTGATAGGGAGGGCAGAGTG---
i dasNov3.JH580105         C 0 C 0

a score=6336298.000000
s hg38.chr6_GL000254v2_alt  1423604 523 +   4827813 CCA-TCATCAACA-AAATTTAGCATTACTGAATTAGGGTGTGTAAGAAGGCAGATAAAGTGTATCCATCATCAACCTAAATCTGTCATTACCAAATTTTAAAGGTGCAGTGACAGGGG-AAGAGTGAGG-GAG-GATTCTGTTGACAGATTGAAGGACAAGTGGGAATCATTTCAGGAAGTCTTCCAGGAGGAGGTGACCTGTAAAAGAAGTGAAGGTTGTGTT-----GACTG----------GAAGAGAAGTGAAAAGGCCTGAACAAAGAATGTGAAGCATCTCTGGGGAGAAAACTGGA-TTGGGAAAAGAAGGGCTAGGAGGTAAGAAAT-CAAAATGAAGGAGACCATAATTCTTTCTCAATTCCCACTCACTATGCCCT-TCCCAAAGATTTTCTTCAA--TCTTGATTGTTTCTATAATGACTCA-TTTTTTTAAGGACTTGGATGT-----TTACACTGT-GCTTTAACATAGCTGGAAATTCTATTAGACCAGAGCAGTTTTCCTATGCAACTACTCCAAGGACTCTGAGTAAAACTTGCCCTG-A
s panTro5.chr6             30296860 524 + 175400573 CCA-TCATCAACA-AAATTTAGCATTACTGAATTAGGGTGTGTAAGAAGGCGGATAAAGTGTATCCATCATCAACCTAAATCTGTCATTACCAAATTTTAAAGGTGCAGTGACGGGGG-AAGAGTGAGG-GAG-GATTCTGTTGACAGATTGAAGGACAAGTGGGAATCATTTCAGGAAGTCTTCCAGGAGGAGGTGACCTGTAAAAGAAGTGAAGGTTGTGTT-----GACTG----------GAAGAGAAGTGAAAAGGCCTGAACAAAGAATGTGAAGCATCTCTGGGGAGAAAACTGGA-TTGGGAAAAGAAGGGCTAGGAGGTAAGAAAT-CAAAATGAAGGAGACCATAATTCTTTCTCAATTCCCACTCACTATGCCCT-TCCCAAAGATTTTCTTCAA--TCTTAGTTGTTTCTATAATGACTCA-TTTTTTTAAGGACTTGGATGT-----TTACACTGT-GCTTTAACATAGCTGGAAATTCTATTAGACCGGAGCAGTTTTCCTATGCAACTACTCCAAGGACTCTGAGTAAAACTTGCCCTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30527323 523 + 173848474 CCA-TCATCAACA-AAATTTAGCATTACTGAATTAGGGTGTGTAAGAAGGCAGATAAAGTGTATCTATCATCAACCTAAATCTGTCATTACCAAATTTTAAAGGTGCAGTGACGGGGG-AAGAGTGAGG-GAG-GATTCTGTTGACAGATTGAAGGACAAGTGGGAATCATTTCAGGAAGTCTTCCAGGAGGAGGTGACCTGTAAAAGAAGTGAAGGTTGTGTT-----GACTG----------GAAGAGAAGTGAAAAGGCCTGAACAAAGAATGTGAAGCATCTCTGGGGAGAAAACTGGA-TTGGGAAAAGAAGGGCTAGGAGGTAAGAAAT-CAAAATGAAGGAGACCATAATTCTTTCTCAATTCCCACTCACTATGCCCT-TCCCAAAGATTTTCTTCAA--TCTTGATTGTTTCTATAATGACTCA-TTTTTTTAAGGACTTGGATGT-----TTACACTGT-GCTTTAACATAGCTGGAAATTCTATTAGACCGGAGCAGTTTTCCTATGCAACTACTCCAAGGACTCTGAGTAAAACTTGCCCTG-A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     234419 523 +   2037526 CCA-TCATCAACA-AAATTTAGCATTACTGAATTAGGGTGTGTAAGAAGGCAGATAAAGTGTATCCATCATCAACCTAAATCTGTCATTACCAAATTTTAAAGGTGCAGTGACGGGGG-AAGAGTGAGG-GAG-GATTCTGTTGACAGATTGAAGGACAAGTGGGAATCATTTCAGGAAGTCTTCCAGGAGGAGGTGACCTGTAAAAGAAGTGAAGGTTGTGTT-----GACTG----------GAAGAGAAGTGAAAAGGCCTGAACAAAGAATGTGAAGCATCTCTGGAGAGAAAACTGGA-TTGGGAAAAGAAGGGCTAGGAGGTAAGAAAT-CAAAATGAAGGAGACCATAATTCTTTCTCAATTCCCACTCACTATGCCCT-TCCCAAAGATTTTCTTCAA--TCTTGATTGTTTCTATAATGACTCA-TTTTTTTAAGGACTTGGATGT-----TTACACTGT-GCTTTAACATAGCTGGAAATTCTATTAGACCAGAGCAGTTTTCCTATGCAACTACTCCAAGGACTCTGAGTAAAACTTGCCCTG-A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74907800 523 + 122973662 CCA-TCATCAACA-AAATTTAGCATTACTGAATTAGGGTGTGTAAGAAGGCAGATAAAGTGTATCCGTCATCAACCTAAATCTGTCATTACCAAATTTTAAAGGTGCAGTGAGGGGTG-AAGAGTGAGG-GAG-GATTCTGTTGACAGATTGAAGGACAAGTGGGAATCATTTCAGGAAGTCTTCCAGGAGGAGGTGACCTGTAAAAGAAATGAAGGTTGTGTT-----GAGTG----------GAAGAGAAGTGAAAAGGCCTGAACAAAGAATGTGAAGCATCTCTAGGGAAAAAACTGGA-TTGGGAAAAGAAGGGCTAGCAGGTAAGAAAT-CCCAACGAAGGAGACCATAATTCTTTCTCAATTCCCACTCACTATGCCCT-TCCCAAAGATTTTCTTCAA--TCTTGATTGTGTCTATAATGACTCA-TTTTTTTAAGGACTTGGATAT-----TTACACTGT-GCTTTAACATAACTGGAAATTCTATTAGACCAGAGCAGTTTTCCTATGCAACTACTCCAAGGACTCTGAGTAAAACTTGCCATG-A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30786850 521 + 172585720 CCA-CCATCAACA-AAATTTAGCATTATTGAATTGGGGTGTGTAATAAGGCAGATGAAGTGTATCCATCATCAACCTAAATCTGTCATTACCAAA-TTTAAAGTGGCAGTGAGGGGGG-AAGAGTGAGT-GAG-GATTCTGTTGACAGCTTGAAGGACAATTGGGAATCATTTTAGGAAGTCTTCCAGGAGGAGGTGACCTGTGAAAGAAAGGAAAGTTGTGTT-----GAGT-----------GAAGAGAAGTGAAAAGGCCTGAACAAAGAATGTGAAGCATCTCTGGGGAGAAAACTGGA-TTGGGAAAAGAAGGCCTAGGAGGTAAGAAAT-CCAAATGAAGGAGACCATATTTCTTTCTCAATTCTCACTCACTGTGCCCT-TCCCCAAGATTTTCTTCAA--TCTTGATTGTTTCTATAATGACTCA-TTTTTTTAAGGACTTGGACGT-----TTACACTAT-GCTTTAACATAACTGGAAATTCTATTAGACCAGAGCAGTTTTCCTATGCAACTACTCCAAGGACTCTGAGTAAAACTTGCCCTG-A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30076373 521 - 170955103 CCA-CCATCAACA-AAATTTAGCATTATTGAATTGGGGTGTGTAATAAGGCAGATGAAGTGTATCCATCATCAACCTAAATCTGTCATTACCAAA-TTTAAAGGGGCAGTGAGGGGGG-AAGAGTGAGT-GAG-GATTCTGTTGACAGCTTGAAGGACAATTGGGAATCATTTTAGGAAGTCTTCCAGGAGGAGGTGACCTGTGAAAGAAAGGAAAGTTGTGTT-----GAGT-----------GAAGAGAAGTGAAAAGGCCTGAACAAAGAATGTGAAGCATCTCTGGGGAGAAAACTGGA-TTGGGAAAAGAAGGCCTAGGAGGTAAGAAAT-CCAAATGAAGGAGACCATATTTCTTTCTCAATTCCCACTCACTGTGCCCT-TCCCCAAGATTTTCTTCAA--TCTTGATTGTTTCTATAATGACTCA-TTTTTTTAAGGACTTGGACGT-----TTACACTAT-GCTTTAACATAACTGGAAATTCTATTAGACCAGAGCAGTTTTCCTATGCAACTACTCCAAGGACTCTGAGTAAAACTTGCCCTG-A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     325683 522 +   1495729 CCA-TCATCAACA-AAATTTAGCATTATTGAATTGGGGTGTGTAATAAGGCAGATGAAGTGTATCTATCATCAACCTAAATCTGTCATTACCAAA-TTTAAAGGGGCAGTGAGGGGGG-AAGAGTGAGT-GAG-GTTTCTGTTGACAGCTTGAAGGACAATTGGGAATCATTTCAGGAAGTCTTCCAGGAGGAGGTGACCTGTAAAAGAAAGGAAGGTTGTGTT-----GAGTG----------GAAGAGAAGTGAAAAGGCCTGAACAAAGAATGTGAAGCATCTCTGGGGAGAAAACTGGA-TTGGGAAAAGAAGGCCTAGGAGGTAAGAAAT-CCAAATGAAAGAGACCATATTTCTTTCTCAATTCCCACTCACTGTGCCCT-TCCCAAAGATTTTCTTCAA--TCTCGATTGTTTCTATAATGACTCA-TTTTTTAAAGGACTTGGATGT-----TTACACTAT-GCTTTAACATAACTGGAAATTCTATTAGACCAGAGCAGTTTTCCTATACAACTACTCCAAGGACTCTGAGTAAAAATTGCCCTG-A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     423565 521 -    863181 CCA-TCATCAACA-AAATTTAGCATTATTGAATTGGGGTGTGTATTAAGGCAGATGAAGTGTATCCATCATCAATCTAAATCTGTCATTACCAAA-TTTAAAGGGGCAGTGAGGGGGG-AAGAGTGAGT-GAG-GATTCTGTTGACAGCTTGAAGGACAATTGGGAATCATTTCAGGAAGTCTTCCAGGAGGAGGTGACCTGTAAAAGAAAGGAAAGTTGTGTT-----GAGT-----------GAAGAGAAGTGAAAAGGCCTGAACAAAGAATGTGAAGCATCTCTGGGGAGAAAACTGGA-TTGGTAAAAGAAGGCCTAGGAGGTAAGAAAT-CCAAATGAAGGAGACCATATTTCTTTCTCAATTCCCACTCACTGTGCCCT-TCCCAAAGATTTTCTTCAA--TCTTGATTGTTTCTATAATGACTCA-TTGTTTTAAGGACTTGGACGT-----TTACATTAT-GCTTTAACATAACTGGAAATTCTATTAGACCAGAGCAGTTTTCCTATGCAACTACTCCAAGGACTCTGAGTAAAACTCACCCTG-A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29575601 523 -  71996105 CCA-TCATCAACA-AAATTTAGCATTACTGAATTGGGGTGTGTGTTAAGGCAGATGAAGTGTATCCATCATCAACCTAAATCTGTCATTACCAAA-TTTAAAGGGGCAGTGAGGGGGG-AAGAGTGAGT-GAG-GATTCTGTTGACAGCTTGAAGGATAATTGGGAATCATTTCAGGAAGTCTTCCAGGAGGAGGTGACCTGTAAAAGAAAGGAAAGTTGTGTT-----GAGTG----------GAAGAGAAGTGAAAAGGCCTGAACAAAGAATGTGAAGCATCTCTGGGGAGAAAACTGGA-TTGGGAAAAGAAGGCCTAGGAGGTAAGAAAT-CCAAATGAAGGAGACCATATTTCTTTCTCAATTCCCACTCACTGTGCCCT-TCCCAAAGATTTTCTTCAA--TCTTGATTGTTTCTATAATGACTCATTTTTTTTAAGGACTTGGACAT-----TTACACTAT-GCTTTAACATAACTGGAAATTCTATTAGACCAGAGCAGTTTTCCTATGCAACTACTCCAGGGACTCTGAGTAAAACTTGCCCTG-A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     261446 522 -    735854 CCA-TCATCAACA-AAATTTAGCATTATTGAATTGGGGTGTGTAATAAGGCAGATGAAGTGTATCTATCATCAACCTAAATCTGTCATTACCAAA-TTTAAAGGGGCAGTGAGGGGGG-AAGAGTGAGT-GAG-GTTTCTGTTGACAGCTTGAAGGACAATTGGGAATCATTTCAGGAAGTCTTCCAGGAGGAAGTGACCTGTAAAAGAAAGGAAGGTTGTGTT-----GCGTG----------GAAGAGAAGTGAAAAGGCCTGAACAAAGAATGTGAAGCATCTCTGGGGAGAAAACTGGA-TTGGGAAAAGAAGGCCTAGGAGGTAAGAAAT-CCAAATGAAAGAGACCATATTTCTTTCACAATTCCCACTCACTGTGCCCT-TCCCAAAGATTTTCTTCAA--TCTCGATTGTTTCTATAATGACTCA-TTTTTTTAAGGACTTGGACGT-----TTACACTAT-GCTTTAACATAACTGGAAATTCTATTAGACCAGAGCAGTTTTCCTATACAACTACTCCAAGGACTCTGAGTAAAAATTGCCCTG-A
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     213699 527 -   1829203 CCA-TCATCAACA-AAATTTAGCATTACTGAATTGGGGTGTGTAATAAAGCAGATGAAGTGTATCCGTCATCAACCTAAATCTGTCATTACCAAA-TTTAAAGGGGCAGTGAGGGGAG-AAGAGTGAGT-GAG-GATTCTGTTGACAGCTTGAAGGACAATTGGGAATCATTTCAGGAAGTCTTCCAGGAGGAGGTGACCTGTAAAAGAAAGGAAGGTTGTGTTCAGTGGAGTG----------GAAGAGAAGTGAAAAGGCCTGAACAAAGAATGTGAAGCATCTCTGGGGAGAAAACTGGA-TTGGGAAAAGAAGGCCTAGGAGGTAAGAAAT-CCAAATGAAGGAGACCATATTTCTTTCTCAATTCCCACTCACTATGCCCT-TCCCAAATATTTTCTTCAA--TCTTGATTGTTTCTATAATGACTCA-TTTTTTTAAGGACTTGGATGT-----TTACACTAT-GCTTTAACATAACTGGAAATTCTATTAGACCAGAGCAATTTTTCTATGCAACTACTCCAAGGACTCTGAGTAAAACTTGCCCTG-A
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30386392 508 + 171630274 CCATTCATCAGCA-AAATTTACCACTAATGAATTAGGGTATGTAATACGGCAGATAAGGTGTATCCATCATCAACTTAAATCTGTCATTACCAAATTATAAAGGTGCAGTGAGGGGGGTTAGAGTGGGT-GAG-GATTCTGTTGACATATTGAAGGACAAGTGGGAATGATTTCTGGAAGTCTTCCAGGAGGCAGTGACCTACGAATGAAAGGAAGGTTGTGTT-----GAGTG----------GAAGAGAAGTGAAAAGGCCTGAGCAAAGAATGTGAAGCATCTCTGGGGAGAAAACTGGA-TTGGGAAAAGAAGGCCTTGGAGGGAAGAAAT-CCAAATGAAAGAGATCATAATTTTTTCTCAGTTCATACTCACTATG--CT-TCCCAAAGATTTTCTTCAA--TCTTGATTGTTTCTATAATGCCTCA--TTTTTTAAGGACTTGGATGT-----TTACAATGT-GCTTTCACATAACTGGAAATTCTATCAGAGCAGAGCAATTT--------------TCCAAGGACACTGAGTAAAACTTGCCCTG-A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           210093 509 +    515838 CCATTCATCAACA-AAATTTACCACTAATGAATTAGGGTGTGTAATACGGCAGATAAGGTGTATCCATCGTCAACTTAAATCTGTCATTACCAAATTATAAAGGTGCAGTGATGGGGG-GAGAGTGAGC-GAG-GATTCTGTTGACATATTGAAGGACAAGTGGGAATGATTTCAGGAAGTCTTCCAGGAGGCAGTGACCTATGAATGAAAGGAAGGTTGTGTT-----GAGTG----------GAAGAGAAGTGAAAAGGTCTGAGCAAAGAATGTGAAGCATCT------------CTGGA-TTGGGAAAAGAAGGCCTTGGAAGTAAGAAAT-CCAAATGAAAGAGATCATAATTTTTTCTCAGTTCATAGTCACTATG--CT-TCCCAAAGATTTTCTTCAA--TCTTGATTGTTTCTGTAATGACTCA--TTTTTTAAGGACTTGGATGT-----TTACAATGT-GCTTTCACGTAACTGGAAATTCTATCAGAGCAGAGCAGTTTTCCTAAGCAACTGCTCCAAGGACACTGAGTAAAACTTGCCCTG-A
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     841945 522 -   1771730 CCATTCATCAACA-AAATTTACCACTAACCAATTAGGGTGTGTAATACGGCAGATAAGGTGTATCCATCATCAACTTGAATCTGTCATTACCAGATTATAAAGGTGCAGTGAGGGGGG-AAGAGTGAGT-GAG-GATTCTGTTGACATATTGAAGGACAAGTGGAAATGATTTCAGGAAGTCTTCCAGGAGGAGGTGACCTATGAATGAAATGAAGGTTGTGTT-----GAGTG----------GAAGAGAAGTGAAAAGACCTGAGCAAAGAATGTGAAGCACCTCTGGGAAGAAAACTGGA-TTGGGAAAAGAAGGCCTTGGAGGTAAGAAAT-CCAGATGAAAGAGATCAGAA-TTTTTCTCAGTTCACACTCACTATG--CT-TCCCAAAGATTTTCTTCAA--CCTTGATTGTTTCTATAATGACTCATTTTTTTTAAGGACTTGGATGT-----TTACAATGT-GCTTTCACAGAACTGGAAATTCTATCAGAGCAGAGAAGTTTTCCTATGCAACTACTCCAAGGACACTGAGTAAAACTTGCCCTG-A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     327686 522 -    383796 CCATTCATCAACA-AAATTTACCACTAATGAATTAGGGTGTGTAATACGGCAGATAAGGTGTATCCATCATCAACTTAAATCTGTCATTACCAAATTATAAAGGTGCAGTGAGGGGGG-AAGAGTGAGT-GAG-GATTCTGTTGACATATTGAAGGACAAGTGTGAATGATTTCAGGAAGTCTTCCAGGAGGCAGTGACCTATGAATGAAAGGAAGGTTGTGTT-----GAGTG----------GAAGAGAAGTGAAAAGGCCTGAGCAAAGAATGTGAAGCATCTCTGGGGAGAAAACTGGA-TTGGGAAAAGAAGTCCTTGGAGGTAAGAAAT-CCAAATGAAAGTGATCATAATTCTTTCTCAATTCACACTCACTATG--CT-TCCCAAAGATTTTCTTCAA--TCTTAATTGTTTCTCTAATGCCTCA-TTTTTTTAAGGACTTGGATGT-----TTATAATGT-GCTTTCACATAACTGGAAATTCTATCAGAGCAAAGCAGTTTTCCTATGCAACTGCTCCATGGACACTGAGTAAAACTTGCCCTG-A
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     110751 461 -   1411461 GCA-TCATCAGCC-AAACCTACCATTCCTGCGTTAGGGACTGTAACAAGGCAGATACGGTGTATCCGCCATCAGCCTCAATCTGTCGTTGCCGGA-----------CACTGA--GGGG-AAGAGCGGGT-GAC-GATCCTGCTGACAGA-GACAGGACGAGTGGGGACGATTTCAGGAAG----------------GACCTGTAAAAGGAGGAGAGGTTGTGTT-----GAGAG----------GGAGAGACAT-GAAAAGGCTGAACGGAGAATGTAAAGCACCTCTAGGGAGAAAACTGGACTTGGGAAAAGAAGGCCCAGGAAGTAAGAAGG-ATGAATGAAGGAAACCACAATTACTCCTCAATGTCCGCTGACTATGCCCT-TCCAAAATATTTCTTTCCA--TCTCGATTGCTTCTGTAATGACTAA-TTTTTTAAAAGACTCTGCAGT-----TGACAGTGT-ATTT-------------------------------TAGTTTTCCTACCCAACCACTTCAAGGACTCTGGGC-AAACATGCCCCG-A
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           258889 504 +  18854210 CCA-TCATCATCCAAAATCTATCATTACTAAATTAGGGGGCATAA-AAGGTAGATAAGGTATATCCATCATTAACCTAAATCTTTCATTACCAGATTGTAAAGGAGCACTGAGGGGGG-AAGAGTAGGT-GAG-GATTCTGTTGACAGATTGGGGGATGAGTAGGAATGATTTCAGGAAC----------------AACCTGTAAATGAAGGGAAGTTTGTGTT-----AAGTG----------ACAAAGAAATGGAAAAAGCCAAATGAAGAATGTAAAGCATCTTTAGGGAAAAAACTGTACTTGGGAAAAGAAGGCCCAGAAAGTAAGAAGG-ATAAATGAAGGAAACCACAATTATTTCTCAATTTCTGCTCACTATGCCCT-TCCAAAATATTTTTTTTCAATATTAGCTTGCTTCTATATTGAATAA--TTTTAAAAAGACTCTGCAGT-----TTACAGTAT-ATTTCAACATAACTGGAAACTCT-----GGCAAGGCAGTTTTTCTCTACCACTGCTCCAGGAACTCTTGTTAAAACATCCTCTG-A
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58049903 457 -  94987271 CCA-TCACCATCCCAAATCTATCATTACTAAATTAGTGAGTGTAATCAGACAGATAAAGTGTCTCCATC-----CCCAAGTATGC-------------------TGGGGTGAGGGATG---GATTGAGA-GTC-CTTTCTGTAGACAGATTAGAGGACAGGAGGAAGTGATTTCAGAAAATCTTCCTGCAGGAAATGACCTGTAAATG---GGAGGGCTGAGTA-----AAATGAGGGTAGTTAAAAAAAAAAAAAAAAAGACTGAGCAGAGAAATT-------TTCTACTGAAAGTGCTAAA------------AGACCTAGGAGACAAAGAATAAAAAATGATCAATGCTGCAATCCTTTCTCAACTCCCATTCATAGTGGTCT-TCC----------CTTCAA--TCACAGCT-------CAATAACTGC-TGGTTTTAGAGAAAAGAATGTGCCAAGTTCACTGC-TCTTCAGTATACTTGGAAGGTCT-------------------CTGGAGCAACTGTTGTAAGGGGTCAGAGTAGACTCTCTTCTG-A
i mm10.chr17               C 0 I 282
s canFam3.chr35            26299984 458 +  26524999 ACA-TCAT----G-GAATCCACTATGACGGAATTAGGGAGCGTGATAATGCATG-AAGATGCCTCCAGCAC---CCTGAGACCATCATTACTGAA-GGTAGAGGTGCAGTGAGCCAGG--AGAGTGGGTGGAG-GGTCATGTTGACAGATTGGGGGATGAGTGGGCCTGATGTCAGGAAGGCTCCCTGGAGGAGGAGACATATAAGTGAAGAGCAGGTTGGGTG-----GAGTG----------GGAAAGAAATGGAAAAGCTGAAACAAAAATTGTGAAGCCTCTTTGGGGAGAAAACCAGAATTGGGAAAAGAAAGCCCAGGCAGAAGGAAGC-ATGAATCAAGGAGGCCATGGTTCTTTCTCCGTTCCCACCTGCTGTGCCCCATTCACAAGGGTTTCTTCAA--TCCAGGTTGGTTCTCTGAGGACTCA-TTTTTTCAAGAGAACTGCTGA-----GTATGGTATGGTTTTAACACAGCTGG-----------------------------------------CAGG----CTGTGT---------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105             6416 437 -     45298 -----------------------------------------------------ACAGAGTGCTGCCACCATTAGCCACAGCCTGTCATCCCTGAATTACGAAGGTGCACTGA-GGTGG-AAGAGTGGGT-GGGCGATTACGCCTGCGG-TGGAAGGGTGAGTGGGAGTGA-ATCAGGGAGGCTTCCTGGAGGAGGTGACCTGTAAGTGATGAGAGGGTTGGGTT-----GAGTG----------GGACAAAAGTGAAAAAGCCTGCAAAAAG---GTCAAGCCTTTC-AGGGAGAAAATGGGAAATGGGAAAAGAAGGCCCAGCAGTT----GGT-AGCACTGACGAAAAGCACAGTTCCGTCTCAGCTCTCTCTCGCCATGCCTC-CCCCGAAGATCTCCCTGAA--GCAGGGGTGCTTCCCTAACAGCCCA-GTTTTTTAAA-ATGCCGCAAT-----TTACGCTGT-GCTGTGAC-CAGCCGGAGGTGCCGTTAGGGCAGGACAGCTGTCCTGTGCAGTCGCCCCGAG-------------------------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               306443 770 + 123392446 I

a score=3485591.000000
s hg38.chr6_GL000254v2_alt  1424127 296 +   4827813 TGGGGGAGGCAGTTTTAGGAGGGGTGG-CTTGAGGCAGGGATAGAGGAAGAATATCCAGCCAGATTAATCCAATCAATCTTGATACTCAAATACATGA-CTATGTTATAGAAATGTCACcttcatagtccattctctcatttaaccct-ataatagccgtgaggccaagtccagccatgttacactgaggcccctgggattctggcatggtaagggatttgactaggctcaaacagc-cggca-ggaggcagagccaggactgaaattcaaacctgctggctccaaagtct---atattctttt
s panTro5.chr6             30297384 296 + 175400573 TGGGGGAGGCAGTTTTAGGAGGGGTGG-CTTGAGGCAGGGATAGAGGAAGAATATCCAGCCAGATTAATCCAATCAATCTTGATACTCAAATACATGA-CTATGTTATAGAAATGTCACcttcatagtccattctctcatttaaccct-ataacagctgtgaggccaagtccagccatgttacactgaggcccctgggattctggcatggtaagggatttgactaggctcaaacagc-tggca-ggaggcagagccaggactgaaattcaaacctgctggctccaaagtct---atattctttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30527846 296 + 173848474 TGGGGGAGGCAGTTTTAGGAGGGGTGG-CTTGAGGCAGGGATAGAGGAAGAATATCCAGCCAGATTAATCCAATCAATCTTGATACTCAAATACATGA-CTATGTTATAGAAATGTCACcttcatagtccattctctcatttaaccct-ataacagctgtgaggccaagtccagccatgttacactgaggcccctgggattctggcatggtaagggatttgactaggctcaaacagc-cggca-ggaggcagagccaggactgaaattcaaacctgctggctccaaagtct---atattctttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     234942 296 +   2037526 TGGGGGAGGCAGTTTTAGGAGGGGTGG-CTTGAGGCACGGATAGAGGAAGAATATCCAGCCAGATTAATCCAATCAATCTTGATACTCAAATACATGA-CTATGTTATAGAAATGTCACcttcatagtccattctctcatttaaccct-ataacagctgtgaggccaagtccagccatgttacgctgaggcccctgggattctggcatggtaacggatttgactaggctcaaacagc-cggca-ggaggcagagccaggactgaaattcaaacctgctggctccaaagtct---atattctttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74908323 296 + 122973662 TGGGGGAGGCAGTTTTAGGAGGGGTGG-CTTGAGGCAGGGATAGAGGAATAAGATCCAGCCAGATTAATCCAATCAATCTTGATACTCAAATACATGA-CTATGTTATAGAAATGTCACcttcatagtcccttctctcatttaaccct-ataacagctgtgaggccaagtccagccacgttacactgaggcccctgggattctggcatggtgagggatttgactaggctcaaacagc-cagca-ggaggcagagccaggactgaaattcaaacctgctagctccaaagtct---gtattctttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30787371 296 + 172585720 TGTGGGAGGCAGTTTTAGGAGGAGTGG-CTTGAGGCAGGGATAGAGGAAGAAGATCCAGCCAGATTAATCCAATCAATCTTGATACTCAAATACATGA-CTATGTTATAGAAATATCACcttcatagtccattctctcatttaaccct-agaacagctgtaaggccaagtccagccacgttacagtgaggcctctgggattctggcatggtaagggatttgactaggctcaaacagc-cggca-agaggcagagctaggactgaaattcaaacctgctggctccaaagtct---gtattgtttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30076894 296 - 170955103 TGTGGGAGGCAGTTTTAGGAGGAGTGG-CTTGAGGCAGGGATAGAGGAAGAAGATCCAGCCAGATTAATCCAATCAATCTTGATACTCAAATACATGA-CTATGTTATAGAAATATCACcttcatagtccattctctcatttaaccct-agaacagctgtaaggccaagtccagccacgttacagtgaggcctctgggattctggcatggtaagggatttgactaggctcaaacagc-cggca-agaggcagagctaggactgaaattcaaacctgctggctccaaagtct---gtattgtttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     326205 296 +   1495729 TGTGGGAGGCAGTTTTAGGAGGAGTGG-CTTGAGGTAGGGATAGAGGAAGAAGATCCAGCCAGATTAATCCAATCAATCTTGATACTCAAATACATGA-CTATGTTATAGAAATGTCACcttcacagtccattctctcttttaaccct-agaacagctgtaaggccaagtccagccatgttacagtgaggcctctgggattctggcgtggtaagggatttgactaggctcaaacaac-cggca-agaggcagagctgggactgaaattcaaacctgctggctccaaagtct---gtattgtttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     424086 296 -    863181 TGTGGGAGGCAGTTTTAGGAGGAGTGG-CTTGAGGCAGGGATAGAGGAAGAAGATCCAGCCAGATTAATCCAATCAATCTTGATACTCAAATACATGA-CTATGTTATAGAAATGTCACcttcatagtccattctctcttttaaccct-agaacagctgtaaggccaagtccagccatgttacagtgaggcctctgggattctggcatggtaagggatttgactaggctcaaacagc-cggca-agaggcagagctggtactgaaattcaaacctgctggctccaaagtct---gtattgtttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29576124 294 -  71996105 TGTGGGAGGCAG--TTAGGAGGAGTGA-CTTGAGGCAGGGATAGAGGAAGAAGATCCAGCCAGATTAATCCAATCAATCTTGATACTCAAATACATGA-CTATGTTATAGAAATATCACcttcatagtccattctctcacttaaccct-agaacagctgtgaggccaagtccagccgtgttacagtgaggcctctgggattctggcgtggtaagggatttgactaggctcaaacagc-cggca-agaggcagagctaggactgaaattcaaacctgctggctccaaagtct---gtattgtttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     261968 296 -    735854 TGTGGGAGGCAGTTTTAGGAGGAGTGG-CTTGAGGCAGGGATAGAGGAAGAAGATCCAGCCAGATTAATCCAATCAATCTTGATACTCAAATACATGA-CTATGTTATAGAAATGTCACcttcacagtccattctctcttttaaccct-ggaacagctgtaaggccaagtccagccatgttacagtgaggcctctgggattctggcgtggtaagggatttgactaggctcaaacagc-cggca-agaggcagagctggtactgaaattcaaacctgctggctccaaagtct---gtattgtttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     214226 296 -   1829203 TGTGGGAGGCAGTTTTAGGAGGAGTGG-CTTGAGGCAGGGGTAGAGGAAGAAGATCCAGCCAGATTAATCCAATCAATCTTGATACTCAAATACATGA-CTATGTTATAGAAATGCCACcttcatagtccattctctcatttaaccct-cgaacagctgtaaggccaagtccagccgttttacagtgaggcctctgggattctggcatggtaagggatttgactaggctcaaacagt-cagca-agaggcagagctaggactgaaattcaaacctgctggctccaaagtct---gtattgtttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30386900 291 + 171630274 TGGGGAAGgcagttttaggaggggtgg-cttgaggcagaggtagaggaagaagatccagccagatcaatccaattaatcctgacactcaaATACATGA-CTATGATATAGAAATGTCACcttcatagtccgttctctcatttaaccct-ataacagctgtgagaccaagtccagccatgttacagtgagccccctgggattctggcatggtaagggatttgacgaggctcaaacagctcggca-------agagccaggattaaaattcaaacctcctggctccaaagtct---gtattctttt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           210602 291 +    515838 TGGGGAAGGCAGTTTTAGGAGGACTGG-CTTGAGGCAGAGCTAGAGGAAGAAGATCCAGCCAGATCAATCCAATTAACCCTGACACGCAAATACATGA-CCACGATACAGAAATGTCACcttcatagtccattctctcctttaaccct-ataacagctgcgagaccgagtccagccatgttacagtgagccccctgggattccggcatggtaagggatttgacgaggctcaaacagcacggca-------agagccaggattgagattcaaacctcctggctccgaagtct---gtattctttt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     842467 293 -   1771730 T-GGGAAGGCAGTTTTAGGAGGGGTGG-CTTGAGTCAGAGATAGTGGAAGAAGATCCAGCCAGATtaatccaattaatcctgacactcaaatacagga-ctatgatgtagaaatgtcaccctcatagtgcattctctcatttaaccct-gtaacagctgtgagaccgagtccagccatgttacagtgagccccctgggattctggcatggtaagggatttgacgaggctcaaacagcacggca-------agagccaggattgaaattcaaacctcctggctccaaagcctgtagtattctttt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     328208 291 -    383796 TGGGGAAGGCAGTTTTAGGAGGGGTGG-CTTGAGGCAGAGATAGAGGGAGAAGATCCAGCCAGATCAATCCaattaatcctcacactcaaatacatga-ctacgatatagaaatgtcaccttcatagtccattctctcatttaaccct-ataacagctgtgagaccgagtccagccatgttacagtgagccccctgggattctgacatggtaagggatttgacgaggctcaaacggcacggca-------agagccaggattgaaattcaaacctcctggctccaaagtct---gtattctttt
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     111212 284 -   1411461 -GGGGAGGGCAGGGTTAGGAGGGGTGGACTTGAGGTGGAAATAGAGGAAGAAGATCCAGCCATATGAATCCAATCATTCCTGAT-CTCAGAGGCATGACCTATGTTACGGGACTGTCACCCTCATAGTCcactctctcatttaaccct-gtaacagctgtgaggccaagtccagccattgtacggtgtcgtcactgggactctggtggggcaaagcatttgaccaggctcaaacagc-tggtt-agaggcagagccaggact-aaatccaaatgtactggctctaaattc--------------
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           259393 287 +  18854210 TAGGGAGAGCAGTTTTAGGAGGGGTGGACTTGAGGTAGAGACA---GAAGAAGATTCAGCCAGATTAATCTAA--AACCGTGATGCTAGAAGACGCAACCTGTACTGGAGGAATGTCATCCTCATAGCAcattctctcacttaacctt-attacagctgtgaggccaagtccagccatttcacagtgaggttactgggattct-----ggcaagggattcgcctatgctcaaatagc-tggtt-agaggcagagctaagaat-taatctaaatttcctggctctaaattcc---atgttctttc
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26300442 190 +  26524999 TCGAGTGGGCAGCTTCCTG-GGAGCTG-CTGCGGGTGGGGAC----GGTGAGGATTCAGCCAGACT-CTCCAAACCACCCTGACGCTCAAGGACATGAGCCTGGTTCTAGGGGCATCA----CACAGTC-----------------------ACAGCCGTCAGG-----------------------------------------------------------------------GC-TGAGA-----GCAGCACCGGGGCTGAAATTCAGATCCACGGCCTCCAGACACT---GTGCACTTTC
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105             6853 274 -     45298 -------GGAAGCTTCAGGAGGGGTGGGCTTGAAGGAG----------AGAGGATTCGGCCAGGGCCCCCTGGTCAGCCC-GGTGTCCAGGGACACGGCCCACACTACGGGGAGGTC---TGCA-GGGCcgttatcatgtctagccctcatgcgagccgtgggttcaaatccatcc--tttacaatgagggcactggggttcgggctgggaaagggatctgcct-ggatgaaacagc-tgttttggaggcagggcggggatggaaatttagatctactg-ctccaacatca---cttcctttct
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               306443 770 + 123392446 I
e mm10.chr17               58050360 282 -  94987271 I

a score=482728.000000
s hg38.chr6_GL000254v2_alt  1424423 41 +   4827813 cCTTAAATATTAATT----------TCTTTCT-----TTTGAGAC----TTTACTTTCTC
s panTro5.chr6             30297680 41 + 175400573 cCTTAAATATTAATT----------TCTTTCT-----TTTGAGAC----TTTACTTTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30528142 40 + 173848474 cCTTAAATA-TAATT----------TCTTTCT-----TTTGAGAC----TTTACTTTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     235238 41 +   2037526 cCTTAAATATTAATT----------TCTTTCT-----TTTGAGAC----TTTACTTTCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74908619 41 + 122973662 cCTTAAATACTAATT----------TCTTTCT-----TCTGAAAC----TTTACTTTCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30787667 41 + 172585720 cCTTAAATATTAATT----------TCTTTAT-----TTTGAGAC----TTTATTTTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30077190 41 - 170955103 cCTTAAATATTAATT----------TCTTTAT-----TTTGAGAC----TTTATTTTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     326501 41 +   1495729 cCTTAAATATTAATT----------TCTTTAT-----TTTGAGAC----TTTATTTTCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     424382 41 -    863181 cCTTAAATATTAATT----------TCTTTAT-----TTTGAGAT----GTTGCTTTCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29576418 41 -  71996105 cCTTAAATATTAATT----------TCTTTAT-----TTTGAGAC----GTTACTCTCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     262264 41 -    735854 cCTTAAATATTAATT----------TCTTTAT-----TTTGAGAT----GTTGCTTTCTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     214522 41 -   1829203 cCTTAAATATTAATT----------TCTTTAT-----TTTGAGAC----TTTACTTTCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30387191 40 + 171630274 cCTTAAATATTAATT----------TCTTTCT-----TCTGAGAC-----TTACTTTCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           210893 40 +    515838 cCTTAAATATGAATT----------TCTTTCT-----TTTGAGAC-----TTACTTTCTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     842760 40 -   1771730 ccttaaatattaatg----------tctttcA-----TTTGAGAC-----TTACTTTCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     328499 40 -    383796 cCTTAAATATAAATT----------TCTTTCT-----TTTGAGAC-----TTACTTTCTC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               307213 45 + 123392446 CCTTAAAAATTTATT----------TCTTTCT-----TCTGAGACTTTATTTACTTTCTC
i micMur3.chr6             I 770 C 0
s proCoq1.NW_012149775v1     111496 41 -   1411461 cCTTAAACATTAATT----------TCTTTCT-----TCTGAGAC----TTTACTTTCTC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           259680 26 +  18854210 cCTTAAACATTAA--------------TTTCT-----TCTGAGAC---------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26300632 51 +  26524999 CCTGAAACGTTGGTTACTCTCTTCATtttttt-----cttaagat----tttatttattc
i canFam3.chr35            C 0 I 426
s dasNov3.JH580105             7127 42 -     45298 tctgaaacattc-tt----------tctctctCTCTCTCTGAGTT----ATTTTTAT---
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58050360 282 -  94987271 I

a score=531949.000000
s hg38.chr6_GL000254v2_alt  1424464 41 +   4827813 -TTTTCTGTCCCTCCTGGAAGGCTCCTTCCT----TTCTCTCCCTT
s panTro5.chr6             30297721 41 + 175400573 -TTTTCTGTCCCTCCTGGAAGCCTCCTTCCT----TTCTCTCCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30528182 41 + 173848474 -TTTTCTGTCCCTCCTGGAAGCCTCCTTCCT----TTCTCTCCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     235279 41 +   2037526 -TTTTCTGTCCCTCCTGGAAGCCTCCTTCCT----TTCTCTCCCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74908660 41 + 122973662 -TTTTCTGTCCCTCCTGGAAGCCTCCTTCCT----TTCTCTCCCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30787708 41 + 172585720 -TTTTCTGTCCCTCCTGGAAGCCTCCTTCCT----TTCTCTGCCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30077231 41 - 170955103 -TTTTCTGTCCCTCCTGGAAGCCTCCTTCCT----TTCTCTGCCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     326542 41 +   1495729 -TTTTCTGTCCCTCCTGGAAGCCTCCTTCCT----TTCTCTGCCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     424423 41 -    863181 -TTTTCTGTCCCTCCTGGAAGCCTCCTTCCT----TTCTCTGCCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29576459 41 -  71996105 -TTTTCTGTCCCTCCTGGAAGCCTCCTTCCT----TTCTCTGCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     262305 41 -    735854 -TTTTCTGTCCCTCCTGGAAGCCTCCTTCCT----TTCTCTGCCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     214563 41 -   1829203 -TTTTCTGTCCCTCCTGGAAGCCTCCTTCCT----TTCTCTCCCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30387231 41 + 171630274 -TTTTCTGTCCCTCCTGGAAGCCTCCTTCCT----TTCTCTCCCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           210933 41 +    515838 -TTTTCTGTCCCTCCTGGAATTCTCCTTCCT----TTCTCTCCCTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     842800 41 -   1771730 -TTTTCTGTCCCTCCTGGAAGCCTCCTTCCT----TTCTCTTCCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     328539 41 -    383796 -TTTTCTGTCCCTCCTGGAAGTCTCCTTCCT----TTCTCTCCTTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               307258 41 + 123392446 -ATTTCTGTCACTCCTAGAAGCCTCCTTCTT----CCCTCTCCCTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     111537 41 -   1411461 -ATTTCTGTCCCTCCTGGGAGCCTCCTTCTT----CCCTCTCCCTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           259706 25 +  18854210 ---------------TGAGAAAAAAAATCTT------CTCTCTCTT
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105             7169 46 -     45298 TTTATTTTATttttttaaaagatttatttatttatttctctcccct
i dasNov3.JH580105         C 0 I 1013
e mm10.chr17               58050360 282 -  94987271 I
e canFam3.chr35            26300683 426 +  26524999 I

a score=727698.000000
s hg38.chr6_GL000254v2_alt  1424505 53 +   4827813 TAAATCCCTGCTTAGGGCTAACAGTTTCTCTGAAATGTTGCCCATCCTTCAAG
s panTro5.chr6             30297762 53 + 175400573 TAAATCCCTGCTTAGGGCTAACAGTTTCTCTGAAATGTTGCCCATCCTTCAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30528223 53 + 173848474 TAAATCCCTGCTTAGGGCTAACAGTTTCTCTGAAATGTTGCCCATCCTTCAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     235320 53 +   2037526 TAAATCCCTGCTTAGGGCTAACAGTTTCTCTGAAATGTTGCCCATCCTTCAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74908701 53 + 122973662 TAAATCTCTGCTTAGGGCTAACAGTTTCTCTGAAATGTTGCCCATCCTTCAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30787749 53 + 172585720 TAAATTTCTGCTTAGGGCTAACGGTTTCTCTGAAATGTTGCCCATCATTCAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30077272 53 - 170955103 TAAATTTCTGCTTAGGGCTAACGGTTTCTCTGAAATGTTGCCCATCATTCAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     326583 53 +   1495729 TAAATTTCTGCTTAGGGCTAACGGTTTCTCTGAAATGTTGCCCATCCTTCAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     424464 53 -    863181 TAAATTTCTGCTTAGGGCTAACGGTTTCTCTGAAATGTTGCCCATCCTTCAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29576500 53 -  71996105 TAAATTTCTGCTTAGGGCTAATGGTTTCTCTGAAATGTTGCCCATCCTTCAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     262346 53 -    735854 TAAATTTCTGCTTAGGGCTAACGGTTTCTCTGAAATGTTGCCCATCCTTCAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     214604 53 -   1829203 TAAATCTCTGCTTACGGCTAACAGTTTCTCTGAAATGTTGCCCATCCTTCAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30387272 53 + 171630274 TAAATCTCTGCTCAGGGCTAACAGTTTCTCTGAAATGTTTCCCATCCTTCAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           210974 53 +    515838 TAAATCTCTGCTCAGGGCTAACAGTTTCTCTGAAATGTTGCCCATCCTTCAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     842841 53 -   1771730 TAAATCTCTGCTCAGGGCTAACAGCTTCTCTGAAATGTTGCCCATCCTTCAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     328580 53 -    383796 TAAATCTCTGCTCAGGGCTAACAGTTTCTCTGAAATGTTGCCCAACCTTCAAG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               307299 52 + 123392446 TCAATCT-TGCTTAGGGCTCACAGTTCCTCTGAGATGCTGTCCCTCCTTCAAG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     111578 53 -   1411461 TCAATCTCTGCTTAGGGGTCACAGTTCCTCTAAGATGCTGACCCTCCTTCAAG
i proCoq1.NW_012149775v1   C 0 I 111
s otoGar3.GL873550           259731 53 +  18854210 TAAATCTCTGTTTAGGGCCAACAGTTTCTCTGAGATGTTGCCCCTCCTTCAAG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58050360 282 -  94987271 I
e dasNov3.JH580105             7215 1013 -     45298 I
e canFam3.chr35            26300683 426 +  26524999 I

a score=63359.000000
s hg38.chr6_GL000254v2_alt  1424558 5 +   4827813 TTCAT
s panTro5.chr6             30297815 5 + 175400573 TTCAT
i panTro5.chr6             C 0 I 1
s panPan2.chr6             30528276 5 + 173848474 TTCAT
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01015528v1     235373 5 +   2037526 TTCAT
i gorGor5.CYUI01015528v1   C 0 I 1
s nomLeu3.chr1a            74908754 5 + 122973662 TTCAT
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             30787802 5 + 172585720 TTCAT
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             30077325 5 - 170955103 TTCAT
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     326636 5 +   1495729 TTCAT
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     424517 5 -    863181 TTCAT
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29576553 5 -  71996105 TTCCT
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1     262399 5 -    735854 TTCAT
i manLeu1.NW_012107142v1   C 0 I 3374
s colAng1.NW_012115577v1     214657 5 -   1829203 TTCAT
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30387325 5 + 171630274 TTCAT
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           211027 5 +    515838 TCCAT
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     842894 5 -   1771730 TTCAT
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496904v1     328633 5 -    383796 TTCAT
i aotNan1.NW_018496904v1   C 0 I 1
s micMur3.chr6               307351 5 + 123392446 CTCAT
i micMur3.chr6             C 0 I 876
s otoGar3.GL873550           259784 5 +  18854210 TTCAT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58050360 282 -  94987271 I
e dasNov3.JH580105             7215 1013 -     45298 I
e proCoq1.NW_012149775v1     111631 111 -   1411461 I
e canFam3.chr35            26300683 426 +  26524999 I

a score=1077600.000000
s hg38.chr6_GL000254v2_alt  1424563 101 +   4827813 -GTAGGTGCTCACTTATTCTCTTTCCTTCCAACAACCC---ACCTATCAATGTCACTAATATTTC--TATCCATCATTTAAATTCTCCCCTAAATGTTCACTATTTG------
s panTro5.chr6             30297821 101 + 175400573 -CTAGGTGCTCACTTATTCTCTTTCCTTCCAACAACCC---ACCTATCAATGTCACTAATATTTC--TATCCATCATTTAAATTCTCCCCTAAATGTTCACTATTTG------
i panTro5.chr6             I 1 C 0
s panPan2.chr6             30528282 101 + 173848474 -CTAGGTGCTCACTTATTCTCTTTCCTTCCAACAACCC---ACCTATCAATGTCACTAATATTTC--TGTCCATCATTTAAATTCTCCCCTAAATGTTCACTATTTG------
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01015528v1     235379 101 +   2037526 -CTAGGTGCTCACTTATTCTCTTTCCTTCCAACAACCC---ACCTATCAATGTCACTAATATTTC--TATCCATCATTTAAATTCTCCCCTAAATGTTCACTATTTG------
i gorGor5.CYUI01015528v1   I 1 C 0
s nomLeu3.chr1a            74908760 101 + 122973662 -CTAGTTGCTCACTTATTCTCTTTCCTTCCAACAACCC---ACCTATCAATGTCACTAATATTTC--TATCCATTATTTAAATTCTCCCCTAAACGTTCACTATTTG------
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30787808 101 + 172585720 -CTAGGTGCTCACTTATTCTCTTTCCTTCTAACAACAC---ACTTGTCTATGTCACTGATATTTC--TATCCATCATTTAAATTCTCCCTTAAACGTTCACTATTTG------
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30077331 101 - 170955103 -CTAGGTGCTCACTTATTCTCTTTCCTTCTAACAACAC---ACTTGTCAATGTCACTGATATTTC--TATCCATCATTTAAATTCTCCCTTAAACGTTCACTATTTG------
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     326642 101 +   1495729 -CTAGGTGCTCACTTACTCTCTTTCCTTCTAACAACAC---ACTTGTCAATGTCACTGATATTTC--TATCCATCATTTAAATTCTCCCTTAAACGTTCACTATTTG------
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     424523 101 -    863181 -CTAGGTGCTCACTTATTCTCTTTCCTTCTAACAACAC---ACTTGTTTATGTCACTAATATTTC--TATCCATCATTTAAATTCTCCCTTAAACATTCACTATTTG------
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29576559 101 -  71996105 -CTAGGTGCTCACTTATTCTCTTTCCTTCTAACAACAC---ACTTGTCAATGTCACTAATATTTC--TATCCATCATTTAAATTCTCCCTTAAACGTTCACTATTTG------
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1     265778 101 -    735854 -CTAGGTGCTCACTTATTCTCTTTCCTTCTAACAACAC---ACTTGTCTATGTCACTAATATTTC--TATCCATCATTTAAATTCTCCCTTAAACATTCACTATTTG------
i manLeu1.NW_012107142v1   I 3374 C 0
s colAng1.NW_012115577v1     214663 101 -   1829203 -CTAGGTGCTCACTTATTCTCTTTCCTTCTAACAACAC---ACTTGTCAGTGTCACTAATATTTC--TATCCATCATTTAAATTCTCCCTTAAACGTTCACTATTTG------
i colAng1.NW_012115577v1   I 1 C 0
s calJac3.chr4             30387331 101 + 171630274 -CTAGGTGCTCACTTGTTCTCTTTCCTTCTAACAACCT---ACCTCTCAATGTCACTAATATTTC--TATCCATCATTTAAATTCTCCCTTAAACATTCACTATTTG------
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           211033 101 +    515838 -CTAGGTGCTCACTTGTTCTGTTTCCTTCTAACAACCT---ACCTCTCAATGTCACTAATATTTC--TATCCATCATTTAAATTCTCCCTTAAACATTCACTATTCG------
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     842900 100 -   1771730 -CTAGGTGCTCACTTG-TCTCTTTCCTTCTAACAACCT---ACCTCTCAATGTCACTAATATTTC--TCTCCATCATTTAAATTCTCCCTTAAACATTCACTATTTG------
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496904v1     328639 101 -    383796 -CTAGGTGCTCACTTGTTCTCTCTCCTTCTAACAACCT---ACCTCTCAATGTCACTAACATTTC--TATCCATCATTTAAATTCTCCTTTAAACATTCATTATTTG------
i aotNan1.NW_018496904v1   I 1 C 0
s otoGar3.GL873550           259789 113 +  18854210 CCTGCACGCTCATTTGTTCTCATTCCTTTTAACAACCCCTAACCTATCAATGTTATTGATACTTCTTTATCCAGCCTGTAAATCCCCCCTCAAATACTCACTGTTCATTTTTC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               307356 876 + 123392446 I
e mm10.chr17               58050360 282 -  94987271 I
e dasNov3.JH580105             7215 1013 -     45298 I
e proCoq1.NW_012149775v1     111631 111 -   1411461 I
e canFam3.chr35            26300683 426 +  26524999 I

a score=3276.000000
s hg38.chr6_GL000254v2_alt  1424664 1 +   4827813 T
s panTro5.chr6             30297922 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30528383 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     235480 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30387432 1 + 171630274 T
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           211134 1 +    515838 T
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     843000 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 I 9
s aotNan1.NW_018496904v1     328740 1 -    383796 T
i aotNan1.NW_018496904v1   C 0 I 9
s otoGar3.GL873550           259902 1 +  18854210 T
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               307356 876 + 123392446 I
e mm10.chr17               58050360 282 -  94987271 I
e dasNov3.JH580105             7215 1013 -     45298 I
e proCoq1.NW_012149775v1     111631 111 -   1411461 I
e canFam3.chr35            26300683 426 +  26524999 I
e colAng1.NW_012115577v1     214764 0 -   1829203 C
e manLeu1.NW_012107142v1     265879 0 -    735854 C
e chlSab2.chr17            29576660 0 -  71996105 C
e cerAty1.NW_012002535v1     424624 0 -    863181 C
e macNem1.NW_012012100v1     326743 0 +   1495729 C
e macFas5.chr4             30077432 0 - 170955103 C
e rheMac8.chr4             30787909 0 + 172585720 C
e nomLeu3.chr1a            74908861 0 + 122973662 C

a score=621.000000
s hg38.chr6_GL000254v2_alt  1424665 3 +   4827813 CTT
s panTro5.chr6             30297923 3 + 175400573 CTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30528384 3 + 173848474 CTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     235481 3 +   2037526 CTT
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30387434 2 + 171630274 CT-
i calJac3.chr4             I 1 I 2
s saiBol1.JH378341           211136 2 +    515838 CT-
i saiBol1.JH378341         I 1 I 2
s otoGar3.GL873550           259903 3 +  18854210 CTT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               307356 876 + 123392446 I
e mm10.chr17               58050360 282 -  94987271 I
e dasNov3.JH580105             7215 1013 -     45298 I
e proCoq1.NW_012149775v1     111631 111 -   1411461 I
e canFam3.chr35            26300683 426 +  26524999 I
e aotNan1.NW_018496904v1     328741 9 -    383796 I
e cebCap1.NW_016107755v1     843001 9 -   1771730 I
e colAng1.NW_012115577v1     214764 0 -   1829203 C
e manLeu1.NW_012107142v1     265879 0 -    735854 C
e chlSab2.chr17            29576660 0 -  71996105 C
e cerAty1.NW_012002535v1     424624 0 -    863181 C
e macNem1.NW_012012100v1     326743 0 +   1495729 C
e macFas5.chr4             30077432 0 - 170955103 C
e rheMac8.chr4             30787909 0 + 172585720 C
e nomLeu3.chr1a            74908861 0 + 122973662 C

a score=5206.000000
s hg38.chr6_GL000254v2_alt  1424668 6 +   4827813 CTCAGT
s panTro5.chr6             30297926 6 + 175400573 CTCAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30528387 6 + 173848474 CTCAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     235484 6 +   2037526 CTCAGT
i gorGor5.CYUI01015528v1   C 0 C 0
s otoGar3.GL873550           259906 6 +  18854210 CTCAAT
i otoGar3.GL873550         C 0 I 2
e micMur3.chr6               307356 876 + 123392446 I
e mm10.chr17               58050360 282 -  94987271 I
e dasNov3.JH580105             7215 1013 -     45298 I
e proCoq1.NW_012149775v1     111631 111 -   1411461 I
e canFam3.chr35            26300683 426 +  26524999 I
e saiBol1.JH378341           211138 2 +    515838 I
e aotNan1.NW_018496904v1     328741 9 -    383796 I
e cebCap1.NW_016107755v1     843001 9 -   1771730 I
e calJac3.chr4             30387436 2 + 171630274 I
e colAng1.NW_012115577v1     214764 0 -   1829203 C
e manLeu1.NW_012107142v1     265879 0 -    735854 C
e chlSab2.chr17            29576660 0 -  71996105 C
e cerAty1.NW_012002535v1     424624 0 -    863181 C
e macNem1.NW_012012100v1     326743 0 +   1495729 C
e macFas5.chr4             30077432 0 - 170955103 C
e rheMac8.chr4             30787909 0 + 172585720 C
e nomLeu3.chr1a            74908861 0 + 122973662 C

a score=306564.000000
s hg38.chr6_GL000254v2_alt  1424674 557 +   4827813 TTTC----------------TTATTTATTTAtttatttattattattatactttaagttttagggtacatgtgcacaatgtgcaggttagttacatatgtatacacgtgccatgctggtgcgctgcacccaccaactcgtcatctagcattaggtatacctcccaatgctatccctcccccctgccctcaccccacaacagtccccagagtgtgatgttccccttcctgtgtccacgtgttctcattgttcaattcccacctatgagtgagaatatgcggtgtttggttttttgttcttgcgatagtttactgagaatgatgatttccaatttcattcatgtccctacaaaggacatgaactcatcattttttatgactgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaataatgccacaataaacatacgtgtgcatgtgtctttatagcagcatgatttatagtcctctgggtatataaccagtaatgggatggctgggtcaaatgg
s panTro5.chr6             30297932 561 + 175400573 TTTC------------ttatttatttatttatttatttattattattatactttaagttttagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtgcgctgcacccactaactcgtcatctagcattaggtatatctcccaatgctatccctcccccctcccctcaccccacaacagtccccagagtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaatatgtggtgtttggttttttgttcttgcgatagtttactgagaatgatgatttccaatttcattcatgtccctacgaaggacatgaactcatcattttttgtggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgagtaatgccacaataaacatacgtgtgcatgtgtctttatagcagcatgatttatagtcctttgggtatatacccagtaatgggatggctgggtcaaatgg
i panTro5.chr6             C 0 I 25
s panPan2.chr6             30528393 557 + 173848474 TTTC----------------TTATTTATTTAtttatttattattattatactttaagttttagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtgccatgctggtgcgctgcacccactaactcgtcatctagcattaggtatatctcccaatgctatccctcccccctcccctcaccccacaacagtccccagagtgtgatgttccccttcctgtgtccatgtgttctcactgttcaattcccacctatgagtgagaatatgcggtgtttggttttttgttcttgcgatagtttactgagaatgatgatttccaatttcattcatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgagtaatgccacaataaacatacgtgtgcatgtgtctttatagcagcatgatttatagtcctttgggtatatacccagtaatgggatggctgggtcaaatgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     235490 573 +   2037526 TTTCttatttatttatttatttatttatttatttatttattattattatactttaagttttagggtacatgtgcacaatgtgcaggttagttacatatgtatacatgtaccatgctggtgcgctgcacccactaactcatcatctagcattaggtatatctcccaatgctatccctcccccctcccctcaccccacaacagtccccagagtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaatatgcggtgtttggttttttgttcttgcgatagtttactgagaatgatgatttccaatttcattcatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaataatgccacaataaacatacgtgtgcatgtgtctttatagcagcatgatttatagtcctttgggtatatacccagtaatgggatggctgggtcaaatgg
i gorGor5.CYUI01015528v1   C 0 C 0
e micMur3.chr6               307356 876 + 123392446 I
e mm10.chr17               58050360 282 -  94987271 I
e dasNov3.JH580105             7215 1013 -     45298 I
e proCoq1.NW_012149775v1     111631 111 -   1411461 I
e canFam3.chr35            26300683 426 +  26524999 I
e saiBol1.JH378341           211138   2 +    515838 I
e otoGar3.GL873550           259912   2 +  18854210 I
e aotNan1.NW_018496904v1     328741   9 -    383796 I
e cebCap1.NW_016107755v1     843001   9 -   1771730 I
e calJac3.chr4             30387436   2 + 171630274 I
e colAng1.NW_012115577v1     214764   0 -   1829203 C
e manLeu1.NW_012107142v1     265879   0 -    735854 C
e chlSab2.chr17            29576660   0 -  71996105 C
e cerAty1.NW_012002535v1     424624   0 -    863181 C
e macNem1.NW_012012100v1     326743   0 +   1495729 C
e macFas5.chr4             30077432   0 - 170955103 C
e rheMac8.chr4             30787909   0 + 172585720 C
e nomLeu3.chr1a            74908861   0 + 122973662 C

a score=1072448.000000
s hg38.chr6_GL000254v2_alt  1425231 3959 +   4827813 tatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgattgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttttctgatggccagtgatggtgagcattttttcatgtgttttttggctgcataaatgtcttcttttgagaagtgtctgttcatgtccttcgcccattttttgatggggttgtttgtttttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgagtaggttgcgaaaattttctcccattttgtaggttgcctattcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgccaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtaatgcctaggttttcttctagggtttttatggttttaggtctaacatttaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatccagtttcagctttctacatatggctagccagttttcccagcaccatttattaaatagggaatcctttccccattgcttgtttttctcaggtttgtcaaagatcagatacttgtagatatgcggccttatttctgagggctctgttctgttccattgatctatatctctgttttggcaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtaacgtgatgcctccagctttgttcttttggcttaggatagacttgacgatgcgggctcttttttggtcccatatgaactttaaagtagttttttccaattctgtgaagaaagtcattggtagcttgatggggatagcattgaatctgtaaattaccttgggcagtatggccattttcacgatattgattcttcctacccatgagcatggaatgttcttccatttgtttgtatcctcttttatttccttgagcagtggtttgtagttctccttgaagaggtccttcacatcccttataagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctgtgtttgtctgttgttggtgtataagaatgcttgtgacttttgtacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattttgggctgagacaatggggttttctagatatacaatcatgtcgtctgcaaacaggaacaatttgacttcctcttttcctaattgaataccctttatttccttctcctgactaattgccctggccagaccttccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccagtttttgcccattcagtatgatattggctgtgggtttgtcatagatagctcttattattttgaaatacatcccatcaatacctaatttattgagagtttttagcatgaagcgttgttgaattttgtcaaaggccttttctgcatctattgagataatcatgtggtttttgtctttgattctgtttatatgctggattacatttattgatttgtgtatattgaaccagccttgcatcccagggatgaagcccacttgatcatggtggataagctttttgatgtgctgctggatttggtttgccagtattttattgaggatttttgcatcaatgttcatcaaggatattggtctaaaattctcttttttggttgtgtctctgcccagctttggtatcaggatgatgctggcctcataaaatgagttagggaagattccctctttttctattgattggaatagtttcagaaggaatggtaccagttcctccttgtacctctggtagaattcggctgtgaatccatctggtcctggactctttttggttggtaagctattgattattgccacaatttcagatcctgttattggtctattcagagattcagcttcttcctggtttagtcttgggagagtgtatgtgtcaaggaatttatccatttcttctagattttctagtttatttgcatagaggtgtttgtagtattctctgatggtagtttctgtttctgtgggatcggtgatgatatcccctttatcattttttattgtgtctatttgattcttctctc-ttttttctttattagtcttgctagcggtttatcaattttgttgatcctttcaaaaaaccagctcctggattcattaattttttggagggtttttttgtgtctctatttccttcaattctgctctgattttagttatttcttgccttctgctagcttttgaatgtgtttgctcttgcttttctagttcttttaattgtgattatagggtgtcaattttagatctttcctgctttctcttgtgggcatttagtgctataaatttccctctacacactgctttgaatgcgtcccagagattctagtatgttgtatctttgttctcgttggtttcaaagaacatctttatttctgccttcatttcgttatgtacccagtagtcattcaggagcaggttgttcagtttccatgtagttgagcggttttgagtgagattcttaatcctgagttctagtttgattgaactgtggtctgagagatagtttgttataatttctgttcttttacatttgctgaggagagctttactttcaagtatgtggtcaattttggaataggtgtggtgtggtgctgaaaaaaatgtatattctgttgatttggggtggagagttctgtagatgtctattaggtctgcttggtgcagagctgagttcaattcctgggtatccttgttaactttctgtcttgttgatctgtctaatgttgacagtggggtgttaaagtctcccattattaatgcatgggaatctaagtctctttgtaggtcactcaggacttgctttatgaatctgggtgctcctgtattgggtgcatatatatttgggatagttagctcttcttgttgaattgatccctttaccattatgtaatggccttctttgtctcttttgatctttgttggtttaaagtctgttttatcagagactaggattgcaacccctgcctttttttgttttccatttgcttggtagatcttcctccatccttttattttgagcctatgtgtgtctctgcacgtgaaatgggtttcctgaatacagcacactgatgggtcttgactctttatccaatttgccagtctgtgtcttttaattggagc-atttagtccatttacatttaaagttaatattgttatgtgtgaatttgatcctgtcattatgatgttagc-tggttattttgctcattagttgatgcagtttcttcctagtctcaatggtc-tttaca-ttttggcatgattttgcagcagctggtactggttgttcctttccatgtttagtgcttccttcaggagctcttttagggcaggcctggtggtgacaaaatctctcagcatttgcttgtctgtaaaggattttatttctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattcttttttttaagaatgttgaatattgacccccactctcttctggcttgtagagtttctgccgagagatccgctgttagtctgatgggcttccctttgagggtaacccgacctttctctctggcttttcttaacattttttccttcatttcaactttggtgaatctgacaattacgtgtcttggagttgctcttctcg
s panPan2.chr6             30528950 3954 + 173848474 tatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgattgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatggtgagcattttttcatgtgttttttggctgcataaatgtcttcttttgagaagtgtctgttcatgtcctttgcccattttttgatgaagttgtttg-ttttttcttgtaaatttgttggagttcattgtagattctggatattagccctttgtcagatgagtaggttgtgaaaattttctcccgtattgtaggttgcctgttcactctgatggtagtttctgttgctgtgcagaagctcttgagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtaatgcctaggttttcttctagggtttttatggttttaggtctaacatgtaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatccagtttcaggtttctacatatggctagccagttttcccagcaccatttattaaataggaaatcctttccccattgcttgtttttctcaggtttgtcaaagatcagatagttgtagatatgtggccttatttctgagggctctgttctgttccattgatctatatctctgttttggcatcagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagtgtgatgcctccagctttgttcttttggcttaggattgacttggtgatgcgggctcttttttggttccatatgaactttaaagtagttttttccaattctgtgaagaaagtcattggtagattgatggggatagcattgaatctgtaaattaccttgggcagtatggccattttcacgatattgattcttcctacccatgagcatggaatgctcttccatttgtttgtatcctgttttatttccttgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattcctaggtattttattctctttgaagtaattgtgaatgggagttcactaatgatttggctctgtgtttgtctgttgttggtgtataagaatgcttgtgatttttgtacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattttgggctgagacaatggggttttctagatatacaatcatgtcgtctgcaaacaggaacaatttgacttcctcttttcctaattgaataccctttatttccttctcctgcctaattgccctagccagaacttccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgcccgttttcaaagggaatgcttccagtttttgcccattcagtatgatattggctgtgggtttgtcataaatagctcttattattttgaaatacatcccataaatacctaatttattgagagtttttagcatgaagcgttgttgaattttgccaaaggccttttctgcatctattgagataatcatgtgg-ttttgtctttgattctgtttatatgctggattacatttattgatttgtgtatattgaaccaaccttgcatcccagggatgaagcccacttgatcatggtggataagctttttgatgtgctgctggattcagtttgccagtattttattgaggatttttgcatcaatgttcatcaaggatattggtctaaaattctcttttttggttgtgtctctgcccagctttggtatcaggatgatgctggcctcataaaatgagttagggaagattccctccttttctattgattggaatagtttcagaaggaatggtaccagttcctctttgtacctctggtagaatttggctgtgaatccatctggtcctggactctttttggttggtaagctattgattattgcctcaatttcagatcctgttattggtctattcagagattcaacttcttcctggtttagtcttgggagagtgtatgtgtccaggaatttatccatttcttctagattttctagtttatttgcgtagaggtgtttgtagtattctctgatgctagtttctgtttctgtgggatcggtggtgatatcccctttatcattttttattgtgtctatttgattct----tc-ttttttctttattagtcttgctagcggtttatcaattttgttgatcctttcaaaaaaccagctcctggattcattaattttttgaagag-ttttttgtgtctctatttccttcagttctgctctgattttagttatttcttgccttctgctagcttttgaatgtgtttgctcttgcttttctagttcttttaattgtgattatagggtgtcaattttggatctttcctgctttctcttgtgggcatttagtgctataaatttccctctacacactgctttgaatgcgtcccagagattctggtatgttgtgtctttgttctcgttggtttcaaagaacatctttatttctgccttcatttcgttatgtacccagtagtcattcaggagcaggttgttcagtttccatgtagttgagcggttttgagtgagattcttaatcctgagttctagtttgattgaactgtggtctgagagatagtttgttataatttctgttcttttacatttgctgaggagagctttacttccaagtatgtggtcaattttggaataggtgtggtgtggtgctg-aaaaaatgtatattctgttgatttggggtagagagttgtgtagatgtctattaggtctgcttggtgcagagctgagttcaattcctgggtatccttgttgactttctgtctcgttgatctgtctaatgttgacagtggggtgttaaagtctcccattattaatgtgtgggaatctaagtctctttgtaggtcactcaggacttgctttatgaatctgggtgctcctgtattgggtgcatatatatttgggatagttagctcttcttgttgaattgatccctttaccattatgtaatggccttctttgtctcttttgatctttgttggtttaaagtctgttttatcagagactaggattgcaacccctgcctttttttg-tttccatttgcttggtagatcttcctccatccttttattttgagcctatgtgtgtctctgcctgtgagatgggtttcctgaatacagcacactgatgggtcttaactctttatccaatttgccagtctgtgtcttttaatggtagctatttagtccatttacatttaaagttaatattgttatgtgtgaatttgatcctgtcattatgatgttagcttggttattttgctcgttagttgatgcagtttcttcctagtctcaatggtcttttacatttttggcatgattttgcagcagctggtactggttgttcctttccatgtttagtgcttccttcaggagctcttttagggcaggcctggtggtgacaaaatctctcagcatttgcttgtctgtaaaggattttatttctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattcttttctttaagaatgttgaatattgacccccactctcttctggcttgtagaatttctgccgagagatccgctgttagtctgatgggcttccctttgagggtaacccaacctttctctctggctgcccttaacattttttccttcatttcaactttggtgaatctgacaattatgcgtcttggagttgctcttctgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     236063 3958 +   2037526 tatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgctcctatttctccacatcctctccagcacctgttctttcctgactttttaatgattgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatggtgagcattttttcatgtgttttttggctgcataaatgtcttcttttgagaagtgtctgttcatgtccttcgcccattttttgatggggttgtttgtttttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgagtaggttgtgaaaattttctcccatgttgtaggttgcctgttcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtaatgcctaggttttcttctagggtttttatggttttaggtctaacatttaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatccagtttcagctttctacatatggctagccagttttcccagcaccatttattaaatagggaatcctttccccattgcttgtttttctcaggtttgtcaaagatcagatggttgtagatatgcggccttatttctgagggctctgttctgttccattgatctatatctctgttttggcaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagtgtgatgtctccagctttgttctttgggcttaggattgacttggcgacgcgggctcttttttggttccatgtgaactttaaagtagttttttccaattctgtgaagaaagtcattggtagcttgatggggatagcattgaatctgtaaattaccttgggcagtatggccattttcacgatattgattcttcctacccatgagcatggaatgttcttccatttgtttgtatcctcttttatttccttgagcagtgatttgtagttctccttgaagaggtccttcacatcccttgtaagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttggctctgtgtttgtctgttgttggtgtataagaatgcttgtgatttttgtacattgattttgtatcctgagactttgttgaagttgcttatcagcttaaggagattttgggctgagacaatggggttttctagatatacaatcatgtcgtctgcaaacaggaacaatttgacttcctcttttcctaattgaataccctttatttccttctcctgcctaattgccctggccagaacttccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgcccgttttcaaagggaatgcttccagtttttgcccattcagtatgatattggctgtgggtttgtcatagatagctcttattattttgaaatacatcccatcaatacctaatttatcgagagtttttagcttgaagcgttgttgaattttgtcaaaggccttttctgcatctattgagataatcatgtggtttttgtgtttggctgtgtttatatgctggattacatttattgatttgcgtatattgaaccagccttgcatcccagggatgaagcccacttgatcatggtggataagctttttgatgtgctgctggatttggtttgccagtgttttattgaggatttttgcatcaatgttcatcaaggatattggtctaaaattctcttttttggttgtgtctgtgcccggctttggtatcaggatgatgctggcctcataaaatgagttagggaagattccctctttttctattgattggaatagttttagaaggaatggtaccagttcctccttctacctctggtagaattcggctgtgaatccatctggtcctggactctttttggttggtaagctattgattattgccacaatttcagatcctgttattggtctattcagagattcaacttcttcctggtttagtcttgggagagtgtatgtgtccaggaatttatccatttcttctagattttctagtttatttgcgtagaggtgtttgtagtattctctgatggtagtttgtgtttctgtgggatcagtggtgatatcccctttatcattttttattgtgtctatttgattcttctctctttttttctttattagtcttgctagcggtttatcaattttgttgatcctttcaaaaagccagctcctggattcattaattttttgaaggg-ttttttgtgtctctatttccttcagttctgctctgattttagttatttcttgccttctgctagcttttgaatgtgtttgctcttgcttttctagttcctttaattgtgatgttagggtgtcaattttggatctttcctgctttctcttgtgggcatttagtgctataaatttccctctacacactgctttgaatgcgtcccagagattctggtatgttgtgtctttgttctcattggtttcaaagaacatctttatttctgccttcatttcgttatgtacccagtaggcattcaggagcaggttgttcagtttccatgtagttgagcggttttgagtgagattcttaatcctgagttctagtttgattgcactgtggtctgagagatagtttgttataatttctgttcttttacatttgctgaggagagctttactttcaagtatgtggtcaattttggaataggtgtggtgtggtgctgaaaaaaatgtatattctgttgatttggggtggagagttctgtagatgtctattaggtctgcttggtgcagagctgagttcaattcctgggtatccttgttgactttctgtctcgttgatctgtctaatgttgacagtggggtgttaaagtctcccattattattgtgtgggaatctaagtctctttgtaggtcactcaggacttgctttatgaatctgggtgctcctgtattgggtgcatatatatttgggatagttagctcttcttgttgaattgatccctttaccattatgtaatggccttctttgtgtcttttgatctttgttggtttaaagtctgttttatcagagactaggattgcaacccctgccttttttgt-tttccatttgcttggtagatcttcctccatccttttattttgagcctatgtgtgtctccgcacgtgagatgggtttcctgaatacagcacactgatgggtcttgactctttatccaatttgccagtctgtgtcttttaattggagc-atttagtccatttacatttaaagttaatattgttatgtgtgaatttgatcctgtcattatgatattagc-tgattattttgctcgttagttgatgcagtttcttcctagtctcaatggtc-tttaca-ttttggcatgattttgcagcagctggtactagttgttcctttccatgtttagtgcttccttcaggagctcttttagggcaggcctggtggtgacaaaatctctcagcgtttgcttgtctgtaaagtattttatttctccttcacttatgaagcttagtttggctggatatgaaattctgggttgaaaattcttttctttaagaatgttgaatattggcccccactctcttctggcttgtagagtttctgccgagagatccgctgttagtctgatgggcttccctttgaggggaacccgacctttctctctggctgcccttaacattttttccttcatttcaactttggtgaatctgacaattatgtgtcttggagttgctcttctgg
i gorGor5.CYUI01015528v1   C 0 C 0
e micMur3.chr6               307356  876 + 123392446 I
e mm10.chr17               58050360  282 -  94987271 I
e dasNov3.JH580105             7215 1013 -     45298 I
e proCoq1.NW_012149775v1     111631  111 -   1411461 I
e canFam3.chr35            26300683  426 +  26524999 I
e saiBol1.JH378341           211138    2 +    515838 I
e otoGar3.GL873550           259912    2 +  18854210 I
e aotNan1.NW_018496904v1     328741    9 -    383796 I
e cebCap1.NW_016107755v1     843001    9 -   1771730 I
e calJac3.chr4             30387436    2 + 171630274 I
e colAng1.NW_012115577v1     214764    0 -   1829203 C
e manLeu1.NW_012107142v1     265879    0 -    735854 C
e chlSab2.chr17            29576660    0 -  71996105 C
e cerAty1.NW_012002535v1     424624    0 -    863181 C
e macNem1.NW_012012100v1     326743    0 +   1495729 C
e macFas5.chr4             30077432    0 - 170955103 C
e rheMac8.chr4             30787909    0 + 172585720 C
e nomLeu3.chr1a            74908861    0 + 122973662 C
e panTro5.chr6             30298493   25 + 175400573 I

a score=834120.000000
s hg38.chr6_GL000254v2_alt  1429190 1527 +   4827813 aggagtatctttgtggcgttctctgtatttcctgaatctgaacgttggcctgccttgctagattggggaagttctcctggataatatcctgcagagtgttttccaacttggttccattctccccgtcactttcaggtacaccaatcagatgtagatttggtcttttcacatagtcccatatttcttggaggctttgctcgtttctttttattcctttttctctaaacttcccttctcgcttcatttcattcatttcatcttccatcgctgataccctttcttctagttgatcgcatcagctcctgaggcttctacattcttcacgtagttctcgagccttggttttcagctccatcagctcctttaagcacttctctgtattggttattctagttattcattcttctaaattcttttcaaagttttcaacttctttgcctttggtttgaatgtcctcccatagttcggagtaatttgatcgtctgaagccttcttctctcagctcgtcaaagtcattctccgtccagctttgttccattcctggtgaggaactgcattcctttggaggaggagaggagctctgctttttagagtttccagtttttctgctctgttttttccccatctttgtggttttatctacttttggtctttgacgatggtgatgtacagatggg-ttttttgtgtggatgtcctttctgtttgttagttttccttctaacagacaggaccctcagctgcaggtctgttagagtacccggccgtgtgaagtgtcagtctgcccctgctggggggtgcctcccagttaggctgctcgggggtcaggggtcagggacccacttgaggaggcagtctgcccgttctcagatctccagctgcgtgctgggagaaccactgctctcttcaaagctgtcagacagggacatttaagtctgcagaggttactgctgtctttttgtttgtctgtgccctgcccccagaggtggagcctacagaggcaggcaggcctccttgagctgtggtgggctccacccagttcgagcttcccggctgttttgtttacctcagcaagcctgggcaatggcgggcgcccctcctccagcctcgctgccaccttgcagtttgatctcagactgctgtgctagcaatcagcgagactctgtgggcgtaggaccctctgagccaagtgcgggatataatctcctggtgcgccgttttttaagcccgtcggaaaagcgcagtattcgggtgagagtgacccgattttccaggtgccctctgtcacccctttctttgactaggaaagggaactccctgaccccttgtgcttcctgagtgaggcaatgcctcgccctgcttcggctcacgcacggtgcgcgcacccactgacctgtgcccactgtctggcactccctagtgagatgaacc-------tcagatggaaatgcagaaatcacctgtcttctgcgttgctcacgctgggagctgtagaccggagctgttcctatttggccatcttggctcctcccccCA
s panTro5.chr6             30298518 1534 + 175400573 aggagtatctttgtggcattctctgtatttcctgaatctgaatgttggcctgccttgctagattggggaagttctcctggataatatcctgcagagtgttttccaacttggttccattctccccgtcactttcaggtacaccaatcagatgtagatttggtcttttcacatagtcccatatttcttggaggctttgctcgtttctttttatacctttttctctaaacttcccttctcgcttcatttcattcatttcatcttccatcgctgataccctttcttctagttgattgcatcggctcctgaggcttctgcattcttcacgtagttctcgagccttggttttcagctccatcagctcctttaagcacttctctgtattggttattctagttattcattcttctaaattcttttcaaagttttcaacttctttgcctttggtttgaatgtcctcccatagctcggagtaatttgatcatctgaagccttcttctctcagctcgtcaaagtcattctccgtccagctttgttccgttcctggtgaggaactacgttcctttggaggaggagaggcactctgctttttagagtttccagtttttctgctctgttttttccccatctttgtggttttatctacttttggtctttgacaatggtgatgtacagatggg-tttttggtgtggatgtcctttctgtttgttagttttccttctaacagagaggaccctcagctgcaggtctgttagagtacccggctgtgtgaggtgtcagtctgcccctgctggggggtgcctcccagttaggctgctcgggggtcaggggtcagggacccacttgaggaggcagtctgcccattctcagatctccagctgcgttctgggagaaccactgctctcttcagagctgtcagacagggacatttaagtctgcagaggttactgttgtctttttgtttgtctgtgccctgcccccagaggtggagcctacagaggcaggcaggcctccttgagctgtggtgggctccacccagttcgagcttcccggctgctttgtttacctcagcaagcctgggcaatggcgggcgcccctctcccagcctcgctgccaccttgcagtttgatctcagactgctgtgctagcaatcagcgagactccgtgggcgtaggaccctctgagccatgtgcgggatataatctcctggtgtgccgttttttaagcccgtcggaaaagcgcagtattcgtgtgggagtgacccgattttccaggtgccctctgtcacccctttctttgactaggaaagggaactccctgaccccttgcacttcccgagtgaggcaatgcctcgccctgcttcggctcacgcacggtgcatgcacccactgacctgtgcccactgtctggcactccctagtgagatgaacccggtacctcagatggaaatgcagaaatcacctgtcttctgcgttgctcacgctgggagctgtagaccggagctgttcctatttggccatcttggctcctcccccCA
i panTro5.chr6             I 25 C 0
s panPan2.chr6             30532904 1534 + 173848474 aggagtatctttgtggcattctctgtatttcctgaatctgaatgttggcctgccttgctagattggggaagttctcctggataatatcctgcagagtgttttccaacttggttccattctccccgtcactttcaggtacaccaatcagatgtagatttggtcttttcacatagtcccatatttcttagaggctttgctcgtttctttttatacctttttctctaaacttcccttctcgcttcatttcattcatttcatcttccatcgctgataccctttcttctagttgattgcatcggctcctgaggcttctgcattcttcacgtagttctcgagccttggttttcagctccatcagctcctttaagcacttctctgtattggttattctagttattcattcttctaaattcttttcaaagttttcaacttctttgcctttggtttgaatgtcctcccatagctcggagtaatttgatcatctgaagccttcttctctcagctcgtcaaagtcattctccgtccagctttgttccgttcctggtgaggaactacgttcctttggaggaggagaggcactctgctttttagagtttccagtttttctgctctgttttttccccatctttgtggttttatctacttttggtctttgacaatggtgatgtacagatggg-tttttggtgtggatgtcctttctgtttgttagttttccttctaacagacaggaccctcagctgcaggtctgttagagtacccggctgtgtgaggtgtcagtctgcccctgctggggggtgcctcccagttaggctgctcgggggtcaggggtcagggacccacttgaggaggcagtctgcccattctcagatctccagctgcgttctgggagaaccactgctctcttcagagctgtcagacagggacatttaagtctgcagaggttactgttgtctttttgtttgtctgtgccctgcccccagaggtggagcctacagaggcaggcaggcctccttgagctgtggtgggctccacccagttcgagcttcccggctgctttgtttacctcagcaagcctgggcaatggcgggcgcccctcccccagcctcgctgccaccttgcagtttgatctcagactgctgtgctagcaatcagcgagactccgtgggcgtaggaccctctgagccatgtgcgggatataatctcctggtgtgccgttttttaagcccatcggaaaagcgcagtattcgggtgggagtgacccgattttccaggtgccctctgtcacccctttctttgactaggaaagggaactccctgaccccttgcacttcccgagtgaggcaatgcctcgccctgcttcggctcacgcacggtgcatgcacccactgacctgtgcccactgtctggcactccctagtgagatgaacccggtacctcagatggaaatgcagaaatcacctgtcttctgcattgctcacgctgggagctgtagaccggagctgttcctatttggccatcttggctcctcccccCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     240021 1531 +   2037526 aggagtatctttgtggcgttctctgtatttcctgaatctgaatgttggcctgccttgctagattggggaagttctcctggataatatcctgcagagtgttttccagcttggttccattctccccatcactttcaggtacaccaatcagatgtagatttggtcttttcacatagtccgatatttcttggaggctttgctcgtttctttttat-tctttttctctaaacttcccttcttgcttcatttcattcatttcatcttccatcgctgataccctttcttccagttgatcgcatcggctcctgaggcttctgcattcttcacgtagttctcgagccttggttttcagctccatcagctcctttaagcacttctctatattggttattctagttatacattcttctaaatttttttcaaagttttcaacttctttgccttt-gtttgaatgtcctcccgtagctcggagtaatttgatcgtctgaagtcttcttctctcagctcatcaaagtcattctccgtccagctttgttctgttcctggtgaggaactgcgttcctttggaggaggagaggagctctgctttttagagtttccagtttttctgctctgttttttccccatctttgtggttttatctacttttggtctttgacgatggtgacgtacagatgggtttttttttgtggatgtcctttctgtttgttagttttccttctaacagacaggaccctcagctgcaggtctgttagagtacctggccgtgtgaggtgtcagtgtgcccctgctggggggtgcctcccagttaggctgctcaggggtcaggggtcagggacccacttgagaaggcagtctgcccgttctcagatctccaactgcgtgctgggagaatcactgctctcttcaaagctgtcagacagggacatttaagtctgcagaggttactgctgtctttttgtttgtctgtgccctgcccccagaggtggagcctacagaggcaggcaggcctccttgagctgtggtgggctccacccagttcgagcttcccggctactttgtttacctcagcaagcctgggcaatggcaggcgcccctcccccagcctcgctgccaccttgcagtttgatctcagactgctgtgctagcaatcagcaagactccgtgggcgtaagaccctccgagccaggtgtgggatataatctcctggtgcaccgttttttaagcccgtc-gaaaagcgcagtattcgggtgggagtgacccaattttccaggtgccctctgtcacccctttctttgactaggaaagggaactccctgaccccttgcacttcctgagtgaggcaatgcctcgccctgcttcggctcatgcacggtgcgcgcacccactgacctgtgcccactgtctggcactccctagtgagatgaacccggtacctcagatggaaatgcagaaatcacccgtcttctgcgtcgctcacactgggagctgtagaccggagctgttcctattcggccatattggctcct-cccccG
i gorGor5.CYUI01015528v1   C 0 C 0
e micMur3.chr6               307356  876 + 123392446 I
e mm10.chr17               58050360  282 -  94987271 I
e dasNov3.JH580105             7215 1013 -     45298 I
e proCoq1.NW_012149775v1     111631  111 -   1411461 I
e canFam3.chr35            26300683  426 +  26524999 I
e saiBol1.JH378341           211138    2 +    515838 I
e otoGar3.GL873550           259912    2 +  18854210 I
e aotNan1.NW_018496904v1     328741    9 -    383796 I
e cebCap1.NW_016107755v1     843001    9 -   1771730 I
e calJac3.chr4             30387436    2 + 171630274 I
e colAng1.NW_012115577v1     214764    0 -   1829203 C
e manLeu1.NW_012107142v1     265879    0 -    735854 C
e chlSab2.chr17            29576660    0 -  71996105 C
e cerAty1.NW_012002535v1     424624    0 -    863181 C
e macNem1.NW_012012100v1     326743    0 +   1495729 C
e macFas5.chr4             30077432    0 - 170955103 C
e rheMac8.chr4             30787909    0 + 172585720 C
e nomLeu3.chr1a            74908861    0 + 122973662 C

a score=8281.000000
s hg38.chr6_GL000254v2_alt  1430717 1 +   4827813 T
s panTro5.chr6             30300052 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30534438 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     241552 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74908861 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30787909 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30077432 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     326743 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     424624 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29576660 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     265879 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     214764 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30387438 1 + 171630274 T
i calJac3.chr4             I 2 C 0
s saiBol1.JH378341           211140 1 +    515838 T
i saiBol1.JH378341         I 2 C 0
e micMur3.chr6               307356 876 + 123392446 I
e mm10.chr17               58050360 282 -  94987271 I
e dasNov3.JH580105             7215 1013 -     45298 I
e proCoq1.NW_012149775v1     111631 111 -   1411461 I
e canFam3.chr35            26300683 426 +  26524999 I
e otoGar3.GL873550           259912 2 +  18854210 I
e aotNan1.NW_018496904v1     328741 9 -    383796 I
e cebCap1.NW_016107755v1     843001 9 -   1771730 I

a score=24289.000000
s hg38.chr6_GL000254v2_alt  1430718 3 +   4827813 CTT
s panTro5.chr6             30300053 3 + 175400573 CTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30534439 3 + 173848474 CTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     241553 3 +   2037526 CTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74908862 3 + 122973662 CTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30787910 3 + 172585720 CTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30077433 3 - 170955103 CTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     326744 3 +   1495729 CTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     424625 3 -    863181 CTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29576661 3 -  71996105 CTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     265880 3 -    735854 CTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     214765 3 -   1829203 CTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30387439 3 + 171630274 CTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           211141 3 +    515838 CTG
i saiBol1.JH378341         C 0 C 0
s proCoq1.NW_012149775v1     111742 3 -   1411461 CTT
i proCoq1.NW_012149775v1   I 111 C 0
e micMur3.chr6               307356 876 + 123392446 I
e mm10.chr17               58050360 282 -  94987271 I
e dasNov3.JH580105             7215 1013 -     45298 I
e canFam3.chr35            26300683 426 +  26524999 I
e otoGar3.GL873550           259912 2 +  18854210 I
e aotNan1.NW_018496904v1     328741 9 -    383796 I
e cebCap1.NW_016107755v1     843001 9 -   1771730 I

a score=91886.000000
s hg38.chr6_GL000254v2_alt  1430721 8 +   4827813 CTCAGTTT
s panTro5.chr6             30300056 8 + 175400573 CTCAGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30534442 8 + 173848474 CTCAGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     241556 8 +   2037526 CTCAGTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74908865 8 + 122973662 CTCAATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30787913 8 + 172585720 CTCAATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30077436 8 - 170955103 CTCAATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     326747 8 +   1495729 CTCAATTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     424628 8 -    863181 CTCAATTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29576664 8 -  71996105 CTCAATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     265883 8 -    735854 CTCAATTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     214768 8 -   1829203 CTCAATTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30387442 8 + 171630274 CTCAATTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           211144 8 +    515838 CTCAATTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     843010 8 -   1771730 CTCAATTT
i cebCap1.NW_016107755v1   I 9 C 0
s aotNan1.NW_018496904v1     328750 8 -    383796 CTCAATTT
i aotNan1.NW_018496904v1   I 9 C 0
s proCoq1.NW_012149775v1     111745 8 -   1411461 CTCAATGT
i proCoq1.NW_012149775v1   C 0 C 0
e micMur3.chr6               307356 876 + 123392446 I
e mm10.chr17               58050360 282 -  94987271 I
e dasNov3.JH580105             7215 1013 -     45298 I
e canFam3.chr35            26300683 426 +  26524999 I
e otoGar3.GL873550           259912 2 +  18854210 I

a score=394436.000000
s hg38.chr6_GL000254v2_alt  1430729 30 +   4827813 TCTCAAGGCCTTCTTGTTCTCCAAGCCCTT
s panTro5.chr6             30300064 30 + 175400573 TCTCAAGGCCTTCTTGTTCTCCAAGCCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30534450 30 + 173848474 TCTCAAGGCCTTCTTGTTCTCCAAGCCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     241564 30 +   2037526 TCTCAAGGCCTTCTTGTTCTCCAAGCCCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74908873 30 + 122973662 TCTCAAGGCCTTCTTGTTCACCAAGCCCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30787921 30 + 172585720 TTTCAAGGCCTTCTTGTTCACCAAGCCCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30077444 30 - 170955103 TTTCAAGGCCTTCTTGTTCACCAAGCCCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     326755 30 +   1495729 TCTCAAGGCCTTCTTGTTCACCAAGCCCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     424636 30 -    863181 TCTCAAGGCCTTCTTGTTCACCAAGCCCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29576672 30 -  71996105 TTTCAAGGCCTTCTTGTTCACCAAGCCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     265891 30 -    735854 TCTCAAGGCCTTCTTGTTCACCAAGCCCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     214776 30 -   1829203 TCTCAAGGCCTTCTTGTTCACCAAGCCCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30387450 30 + 171630274 TCTCAAGACCTTCTTGTTCACCAAGCCCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           211152 30 +    515838 TCTCAAGGCCTTCTTGTTCACCAAGCCCTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     843018 30 -   1771730 TCTCAAAGCCTTCTTGTTCACCAAGCCCTT
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496904v1     328758 30 -    383796 TCTCAAGGCCTTCTTGTTCACCAAGCCCTT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     111753 30 -   1411461 TCCCAAGGCCTTCTTGTTCTCCAACCCCTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           259914 30 +  18854210 TCCCAGGGCCTTCTTGTTTCCCAACCTCTT
i otoGar3.GL873550         I 2 C 0
e micMur3.chr6               307356 876 + 123392446 I
e mm10.chr17               58050360 282 -  94987271 I
e dasNov3.JH580105             7215 1013 -     45298 I
e canFam3.chr35            26300683 426 +  26524999 I

a score=28146.000000
s hg38.chr6_GL000254v2_alt  1430759 5 +   4827813 AGCAG
s panTro5.chr6             30300094 5 + 175400573 AGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30534480 5 + 173848474 AGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     241594 5 +   2037526 AGCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74908903 5 + 122973662 AGCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30787951 5 + 172585720 AGCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30077474 5 - 170955103 AGCAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     326785 5 +   1495729 AGCAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     424666 5 -    863181 AGCAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29576702 5 -  71996105 AGCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     265921 5 -    735854 AGCAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     214806 5 -   1829203 AGCAG
i colAng1.NW_012115577v1   C 0 C 0
s proCoq1.NW_012149775v1     111783 5 -   1411461 AGCAG
i proCoq1.NW_012149775v1   C 0 I 1052
e micMur3.chr6               307356 876 + 123392446 I
e mm10.chr17               58050360 282 -  94987271 I
e dasNov3.JH580105             7215 1013 -     45298 I
e canFam3.chr35            26300683 426 +  26524999 I
e saiBol1.JH378341           211182 0 +    515838 C
e otoGar3.GL873550           259944 0 +  18854210 C
e aotNan1.NW_018496904v1     328788 0 -    383796 C
e cebCap1.NW_016107755v1     843048 1 -   1771730 I
e calJac3.chr4             30387480 0 + 171630274 C

a score=1575723.000000
s hg38.chr6_GL000254v2_alt  1430764 301 +   4827813 TTTCC-Attttttttttt--ttgtttgt----ttgtttgtttgtgacagagtctcgctctgtcaccaggctggagtgcagtggcatgagctcagttcactacaacctctgcctcctgggttcaagcgattctcctagcttagcctcccaagtagctgggactacaggcacatgccaccacacccagctaatttttgtatttttagtagagatggggttttgtcatgtttgccaggctggtcttgaactccttacctcaggtgatctgcctgcttcagcctaccaaagtgctaggattacaggtgtgag
s panTro5.chr6             30300099 303 + 175400573 TTTCT-GTttttttgtttgcttgtttgt----ttgtttatttgtgacagagtctcgctctgtcaccaggctggagtgcagtggcatgagctcagttcactacaacctctgcctcctgggttcaagcgattctcctagcttagcctcccaagtagctgggactacaggcacatgccaccacactcagctaatttttgtatttttagtagagatggggttttgtcatgtttgccaggctggtctttaactccttatctcaggtgatctgcctgcttcagcctaccaaagtgctaggattacaggtgtgag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30534485 303 + 173848474 TTTCT-GTttttttgtttgcttgtttgt----ttgtttatttgtgacagagtctcgctctgtcaccaggctggagtgcagtggcatgagctcagttcactacaacctctgcctcctgggttcaagcgattctcctagcttagcctcccaagtagctgggactacaggcacatgccaccacactcagctaatttttgtatttttagtagagatggggttttgtcatgtttgccaggctggtctttaactccttatctcaggtgatctgcctgcttcagcctaccaaagtgctaggattacaggtgtgag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     241599 303 +   2037526 TTTCC-gtttttttgtttgtttgtttgt----ttgtttgtttgtgacagagtctcactctgtcaccaggctggagtgcagtggcatgagctcagttcactacaacctctgcctcctgggttcaagcgattatcctagcttagcctcccaagtagctgggactataggcacatgccaccacacccagctaatttttgtatttttagtagagatggggttttgtcatgtttgccaggctggtcttgaactccttacctcaggtgatctgcctgcttcagcctaccaaagtgctaggattacaggtgtgag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74908908 296 + 122973662 TTTCC-GTTtttgt------ttgtttgt----ttgtttgtttgtgacagagtctcgctctgttgccaggctggagtgcagtggcatgatctcagttcactgcaacctccacctcctgggttcaagcgattctcccgcctcagcctcccaaatagctgggactacaggcgcatgccacgatgcccagctaatttttgtatttttagcagagatggagttttgtcacgtttgccaggctggtcttgaactcctgacctcaggtgatctgcctgcctcagcctcccaaagt-ccaatgtggtggaattcag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30787956 308 + 172585720 CTTTCAGTTTGTTCAtttgtttgtttgtttgtttgtttgtttgagacagagtctcgctctgtcgccaggctgcagtgcagtggcatgatctcagctcactgcagcctctgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggcacgtgccatcacacccagctaatttttgtatttttagtagagatggggttttgtcatgtttgccaggctggtctcggactcctgacctcaggtgatctgcctgcctcagcctcccaaaatgctgggatttcaggtgtgag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30077479 308 - 170955103 CTTTCAGTTTGTTCAtttgtttgtttgtttgtttgtttgtttgagacagagtctcgctctgtcgccaggctgcagtgcagtggcatgatctcagctcactgcagcctctgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggcacgtgccatcacacccagctaatttttgtatttttagtagagatggggttttgtcatgtttgccaggctggtctcggactcctgaccttaggtgatctgcctgcctcagcctcccaaaatgctgggatttcaggtgtgag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     326790 308 +   1495729 TTTCCAgtttgtttgtttgtttgtttgtttgtttgtttgtttgagatagagtctcgctctgtcaccaggctgcagtgcagtggcatgatctcagctcactgcagcctctgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggcatatgccatcacacccagctaatttttgtatttttagtagagatggggttttgtcatgtttgccaggctggtctcggactcctgaccttaggtgatctgcctgcctcagcctcccaaaatgctgggatttcaggtgtgag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     424671 288 -    863181 CTTCCAGtttgtttgtttgtttgt--------------------gacagagtctcgctctgtcgccaggctgcagtgcagtggcatgatctcagctcactgcagcctctgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggcacgtgccatcacacccagctaatttttgtatttttagtagagatggggttttgtcatgtttgccaggctggtctcagactcctgacctcaggtgatctgcctgcctcagcctcccaaaatgctgggatttcaggtgtgag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29576707 300 -  71996105 CTTCCAATTTGTTCAtttgtttgtttgt--------ttgttggagacagagtcttgctctgtcgccaggctgcagtgcagtggcatgatctcagctcactgcaacctctgcctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggcacatgccatcacacccagctaatttttgtatttttagtagagatgaggttttgtcatgtttgccaggctggtctcagactcctgacctcaggtgatctgcctgcctcagcctcccaaaatgctgggatttcaggtgtgag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     265926 292 -    735854 CTTCCAGtttgtttgtttgtttgtttgt----------------gacagagtctcgctctgtcgccaggctgcagtgcagtggcatgatctcagctcactgcagcctctgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggcacgtgccatcacacccagctaatttttgtatttttagtagagatggggttttgtcatgtttgccaggctggtctcggactcctgacctcaggtgatctgcctgcctcagcctcccaaaatgctgggatttcaggtgtgag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     214811 295 -   1829203 CTTCCAGTTTGTTCGtttgtttgtttgt------------ttgagacagagtctcgctctgtcaccaggctggagtgtagtggcataatctcagctcactgcaacctctgcctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggcacgtgccaccacacccagctaa-ttttgtatttttagtagagatggggttttgtcatgtttgccaggctggtctcgaactcctgacctcaggtgatctgcctgcctcagcctcccaaaatgctgggatttcaggtgtgag
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               307356 876 + 123392446 I
e mm10.chr17               58050360 282 -  94987271 I
e dasNov3.JH580105             7215 1013 -     45298 I
e proCoq1.NW_012149775v1     111788 1052 -   1411461 I
e canFam3.chr35            26300683 426 +  26524999 I
e saiBol1.JH378341           211182   0 +    515838 C
e otoGar3.GL873550           259944   0 +  18854210 C
e aotNan1.NW_018496904v1     328788   0 -    383796 C
e cebCap1.NW_016107755v1     843048   1 -   1771730 I
e calJac3.chr4             30387480   0 + 171630274 C

a score=96015.000000
s hg38.chr6_GL000254v2_alt  1431065 15 +   4827813 ccactgcacctggcc
s panTro5.chr6             30300402 15 + 175400573 ccaccgcacctggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30534788 15 + 173848474 ccaccgcacctggcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     241902 15 +   2037526 ccaccacacctggcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74909204 15 + 122973662 ccaccgcacctggcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30788264 15 + 172585720 ccactgcacctggcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30077787 15 - 170955103 ccactgcacctggcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     327098 15 +   1495729 ccactgcacctggcc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     424959 15 -    863181 ccactgcacctggcc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29577007 15 -  71996105 ccactgcacctgacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     266218 15 -    735854 ccactgcacctggcc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     215106 15 -   1829203 ccaccacacctggcc
i colAng1.NW_012115577v1   C 0 C 0
s mm10.chr17               58050642 15 -  94987271 CCATTTCCCATGGCC
i mm10.chr17               I 282 I 4
e micMur3.chr6               307356 876 + 123392446 I
e dasNov3.JH580105             7215 1013 -     45298 I
e proCoq1.NW_012149775v1     111788 1052 -   1411461 I
e canFam3.chr35            26300683 426 +  26524999 I
e saiBol1.JH378341           211182  0 +    515838 C
e otoGar3.GL873550           259944  0 +  18854210 C
e aotNan1.NW_018496904v1     328788  0 -    383796 C
e cebCap1.NW_016107755v1     843048  1 -   1771730 I
e calJac3.chr4             30387480  0 + 171630274 C

a score=12376.000000
s hg38.chr6_GL000254v2_alt  1431080 1 +   4827813 A
s panTro5.chr6             30300417 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30534803 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     241917 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74909219 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30788279 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30077802 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     327113 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     424974 1 -    863181 A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29577022 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     266233 1 -    735854 A
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     215121 1 -   1829203 A
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30387480 1 + 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           211182 1 +    515838 A
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     328788 1 -    383796 A
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           259944 1 +  18854210 A
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58050661 1 -  94987271 A
i mm10.chr17               I 4 C 0
e micMur3.chr6               307356 876 + 123392446 I
e dasNov3.JH580105             7215 1013 -     45298 I
e proCoq1.NW_012149775v1     111788 1052 -   1411461 I
e canFam3.chr35            26300683 426 +  26524999 I
e cebCap1.NW_016107755v1     843048 1 -   1771730 I

a score=15300.000000
s hg38.chr6_GL000254v2_alt  1431081 1 +   4827813 G
s panTro5.chr6             30300418 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30534804 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     241918 1 +   2037526 G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74909220 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30788280 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30077803 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     327114 1 +   1495729 G
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     424975 1 -    863181 G
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29577023 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     266234 1 -    735854 G
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     215122 1 -   1829203 G
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30387481 1 + 171630274 G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           211183 1 +    515838 G
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     843049 1 -   1771730 G
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496904v1     328789 1 -    383796 G
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           259945 1 +  18854210 G
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58050662 1 -  94987271 G
i mm10.chr17               C 0 C 0
e micMur3.chr6               307356 876 + 123392446 I
e dasNov3.JH580105             7215 1013 -     45298 I
e proCoq1.NW_012149775v1     111788 1052 -   1411461 I
e canFam3.chr35            26300683 426 +  26524999 I

a score=380536.000000
s hg38.chr6_GL000254v2_alt  1431082 29 +   4827813 CAGTTTCCTTTTAAGAGCTGTGCATTCAT
s panTro5.chr6             30300419 29 + 175400573 CAGTTTCCTTTTAAGAGCTGTGCATTCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30534805 29 + 173848474 CAGTTTCCTTTTAAGAGCTGTGCATTCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     241919 29 +   2037526 CAGTTTCCTTTTAAGAGCTGTGCATTCAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74909221 29 + 122973662 CAGTTTCCTTTTAAGAGTTGTGCATTCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30788281 29 + 172585720 CAGTCTCCTTTTAAGAGCTGTGCATTCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30077804 29 - 170955103 CAGTCTCCTTTTAAGAGCTGTGCATTCAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     327115 29 +   1495729 CAGTTTCCTTTTAAGAGCTGTGCATTCAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     424976 29 -    863181 CAGTTTCCTTTTAAGAGCTGTGCATTCAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29577024 29 -  71996105 CAGTTTCCTTTTAAGAGCTGTGCATTCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     266235 29 -    735854 CAGTTTCCTTTTAAGAGCTGTGCATTCAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     215123 29 -   1829203 CAGTTTCCTTTTAAGAGCTGTGCATTCAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30387482 29 + 171630274 CAGTTTCCTTTTAAGTGTTGTGCATTCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           211184 29 +    515838 CAGTTTCCTTTTAAGTGTTGTGCATTCAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     843050 29 -   1771730 CAGTTTCCTTTTAAGTGTTGTGCATTCAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     328790 29 -    383796 CAATTTCCTTTTAAGAGTTGTGCATTCAC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           259946 29 +  18854210 CAATATCCCTTTAAAAGCTGTGCATTTGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58050663 29 -  94987271 CAGAATTTCTTCAAGAGCTGACCATTCAC
i mm10.chr17               C 0 C 0
s dasNov3.JH580105             8228 29 -     45298 CGGTTTCTTTTTAAGAGCTGTGCTCTCAG
i dasNov3.JH580105         I 1013 C 0
e micMur3.chr6               307356 876 + 123392446 I
e proCoq1.NW_012149775v1     111788 1052 -   1411461 I
e canFam3.chr35            26300683 426 +  26524999 I

a score=5481266.000000
s hg38.chr6_GL000254v2_alt  1431111 470 +   4827813 TCATCCATT-Catt---taatcattcaacaactatttactaag----cacctactatgtaccatgcgttgttctaggagttaggaa--gagtggagagcaagccagccatagtcccttgt-cctctggtaatttagattccattgaaa-aaggc----caacaataagcaagtaaacaaataaattaacaagataattatagattgtgatcagtgc-tttgaagaatacaaagtgggtaatataagaggaattaactggaggaggtgtgcactacttttaataggatgttagaaaaagctcc-------tctgagaagg-----------------------tgaag---agagggagccagcaatg-agaagagttgggagag------------agc-----------aacaacagcagatgcaaagac--cctgaagtgggaaagatcttga--acgtatgaagtgggatgacaatgg-------------------------tttgatgtgagatt---------------ggagaggtactaagagccaagctgtgtaggaccttagggaccaggataaggag
s panTro5.chr6             30300448 470 + 175400573 TCATCCATT-Catt---taatcattcaacaactatttactaag----cacctactatgtaccatgcattgttctaggagttaggaa--gagtggagagcaagccagccatagtcccttgt-cctctggtaatttagattccattgaaa-aaggc----caacaataagcaagtaaacaaataaattaacaagataattatagattgtgatcagtgc-tttgaagaatacaaagtgggtaatataagaggaattaactggaggcggtgtgcactacttttaataggatgttagaaaaagctcc-------tctgagaagg-----------------------tgaag---agagggagccaacagtg-agaaaagttgggagaa------------agc-----------aacaacagcagatgcaaaggc--cctgaagtgggaaagatcttga--acgtatgaagtgggatgacaatgg-------------------------tttgatgtgagatt---------------ggagtggtactaagagccaagctgtgtaggaccttagggaccaggataaggag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30534834 470 + 173848474 TCATCCATT-Catt---taatcattcaacaactatttactaag----cacctactatgtaccatgcattgttctaggagttaggaa--gagtggagagcaagccagccatagtcccttgt-cctctggtaatttagattccattgaaa-aaggc----caacaataagcaagtaaacaaataaattaacaagataattatagattgtgatcagtgc-tttgaagaatacaaagtgggtaatataagaggaattaactggaggcggtgtgcactacttttaataggatgttagaaaaagctcc-------tctgagaagg-----------------------tgaag---agagggagccaacagtg-agaaaagttgggagaa------------agc-----------aacaacagcagatgcaaaggc--cctgaagtgggaaagatcttga--acgtatgaagtgggatgacaatgg-------------------------tttgatgtgagatt---------------ggagtggtactaagagccaagctgtgtaggaccttagggaccaggataaggag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     241948 470 +   2037526 TCATCCATT-Catt---taatcattcaacaactatttactaag----cacctactatgtaccatgcattgttctaggagttaggaa--gagtggagagcaagccagccataatcccttgt-cctctggtaatttagattccattgaaa-aaggc----caacaataagcaagtaaacaaataaattaacaagataattatagattgtgatcagtgc-tttgaagaatacaaagtgggtaatataagaggaattaactggaggaggtgtgcactacttttaataggatgttagaaaaagctcc-------tctgagaagg-----------------------tgatg---agagggagccagcagtg-agaagagttgggagag------------agc-----------aacaacagcagatgcaaaggc--cctgaagtgggaaagatcttga--acgtatgaagtgggatgacaatgg-------------------------tttgatgtgagatt---------------ggagaggtactaagagccaagctgtgtaggaccttagggaccaggataaggag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74909250 470 + 122973662 TCATCCATT-Catt---taatcattcaacaactatttactaag----cacctactatgtaccatgcattgttctaggagttaggaa--cagtggagaacaagccagccatagtcccttgt-cctctggtaatttagattccattgaaa-aaggc----caacaataagcaagtagacaaacaaactaacaagataattatagattgtgatcagtgc-tttgaagaatacaaagtgggtaatgtaagaggaattaactggaggacgtgtgcactacttttaataggatgttagaaaaacctcc-------tctgagaagg-----------------------tgatg---agagagagccagcagtg-agaagaattgggggag------------agc-----------aacaacagcagatgcaaaggc--cctgaagtgggaaagatcttga--acgtatgaagtgtgatgacaatgg-------------------------tttgatgtgagatt---------------ggagaggtactaagagccaagctgtgtaggaccttagggaccaggacaaggag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30788310 468 + 172585720 TTGTCCATT-Catt---taatcattcaacaactatttactaag----cacctactatgtaccatgcgttgttctaggagttaggaa--cagtggagaacaagccagtcatagtcccttgt-cctctggtaatttagattccactgaaa-aaggc----caacaataagcaagtaaataaataaattaacaagataattatagattgtgatcagtgc-tttgaagaatacaaagttggtaatataagaggaattaactggaggaggtgtgcactacttttaataggatgttagaaaaagctcc-------tctgagaagg-----------------------tgatg---agagggagcc-gcagtg-aggagagttgggggag------------agc-----------aacaacagcagatgcaaaggc--cctgaagtgcgaaagatcttga--atgtacgaagtgtaat-acaatgg-------------------------tttgatgtgagatt---------------ggagaggtactaagagccaagctgtgtaggaccttagggaccaggataaggag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30077833 468 - 170955103 TTGTCCatt-catt---taaccattcaacaactatttactaag----cacctactatgtaccatgcattgttctaggagttaggaa--cagtggagaacaagccagtcatagtcccttgt-cctctggtaatttagattccactgaaa-aaggc----caacaataagcaagtaaataaataaattaacaagataattatagattgtgatcagtgc-tttgaagaatacaaagttggtaatataagaggaattaactggaggaggtgtgcactacttttaataggatgttagaaaaagctcc-------tctgagaagg-----------------------tgatg---agagggagcc-gcagtg-aggagagttgggggag------------agc-----------aacaacagcagatgcaaaggc--cctgaagtgcgaaagatcttga--atgtacgaagtgtaat-acaatgg-------------------------tttgatgtgagatt---------------ggagaggtactaagagccaagctgtgtaggaccttagggaccaggataaggag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     327144 468 +   1495729 TCGTCCATT-Catt---taatcattcaacaactatttactaag----cacctactatgtaccatgcattgttctaggagttaagaa--cagtggagaacaagccagttatagtcccttgt-cctctggtaatttagattccactgaaa-aaggc----caacaataagcaagtaaataaataaattaacaagataattatagattgtgatcagtgc-tttgaagaatacaaagtgggtaatataagaggaattaactggaggaggtgtgcactacttttaataggatgttagaaaaagctcc-------tttgagaagg-----------------------tgatg---agagggagcc-gcagtg-agaagagttgggggag------------agc-----------aaaaacagcagatgcaaaggc--cctgaagtgtgaaagatcttga--atgtacgaagtgtaat-acaatgg-------------------------tttgatgtgagatt---------------ggagaggtactaagagccaagctgtgtaggaccttagggaccaggataaggag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     425005 468 -    863181 TCGCCCatt-catt---taaccattcaacaactatttactaag----cacctactatgtgccatgcattgttctaggagttaggaa--cagtggagaacaagccagtcatagtcccttgt-cctctggtaatttagattccactgaaa-aaggc----caacaataagcaagtaaataaataaattaacaagataattatagattgtgatcagtgc-tttgaagaatacaaagtgggtaatataagaggaattaactggaggaggtgtgcactacttttaataggatgttagaaaaagctcc-------tctgagaagg-----------------------tgatg---agagggagcc-gcagtg-aggagagttgggggag------------agc-----------aacaacagcagatgcaaaggc--cctgaagtgcgaaagatcttga--atgtacgaagtgtaat-acaatgg-------------------------tttgatgtgagatt---------------ggagaggtactaagagccaagctgtgtaggacctgagggaccaggataaggag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29577053 470 -  71996105 TCCTCCatt-catt---tgatcattcaacaactatttactaag----cacctactatgtaccatgcattgttctaggagttaggaa--cagtggagaacaagccagtcatagtcccttgt-cctctggtaatttagattccactgaaa-aaggc----caacaataagcaagtaaataaataaattaacaagataattatagattgtgatcagtgc-tttgaagaatacaaagtgggtaatataagaggaattaactggaggaggtgtgcactacttttaataggatgttagaaaaagctcc-------tctgagaagg-----------------------tgatg---agagggagccagcagtg-aggagagttgggggag------------agc-----------aacaacagcagatgcaaaggc--ccggaagtgcgaaagatcttga--acgtatgaagtgtaatgacaatgg-------------------------tttgatgtgagatt---------------ggagaggtactaagagccaagctgtgtaggaccttagggaccaggataaggag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     266264 468 -    735854 TCATCCatt-catt---taaccattcaacaactatttactaag----cacctactatgtgccatgcattgttctaggagttaggaa--cagtggagaacaagccagtcatagtcccttgt-cctctggtaatttagattccactgaaa-aaggc----caacaataagcaagtaaataaataaattaacaagataattatagattgtgatcagtgc-tttgaagaatacaaagtgggtaatataagaggaattaactggaggaggtgtgcactacttttaataggatgttagaaaaagctcc-------tctgagaagg-----------------------tgatg---agagggagcc-gcagtg-aggagagttgggggag------------agc-----------aacaacagcagatgcaaaggc--cctgaagtgtgaaagatcttga--atgtacgaagtgtaat-acaatgg-------------------------tttgatgtgagatt---------------ggagaggtaccaagagccaagctgtgtaggaccttagggaccaggataaggag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     215152 470 -   1829203 TCGTCCATT-Catt---taatcattcaacaactatttactaag----cacctattatgtaccatgcattgttctaggagttaggaa--cagtggagaacaagccagtcatagtcccttgt-cctctggtaatttagattccactaaaa-aaggc----caacaataagcaagtaaataaataaattaacaagataattatagattgtgatcagtgc-tttgaagaatacaaagtgggtaatataagaggaattaactggaggaggtgtgcactacttttaataggatgttagaaaaagctcc-------tccgagaagg-----------------------tgatg---agagggagccagcggtg-agaagagttgggggag------------agc-----------aacaacagcagatgcaaaggc--cctgaagtgggaAAGATCTTGA--ACGCATGAAGTGTAATgacaatgg-------------------------tttgatgtgagatt---------------ggagaggtactaagagccaagctgtgtaggaccttagggactaggataaggag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30387511 482 + 171630274 TCATCCATT-Cact---taattattcaacagctatttactaag----cacctactatgtaccatgcattgttctaggagttaggga--cagtggagaacaagccagccatagtcccttgt-cctctggaaatttagattccattgaaa-aaggc----caacaataagcaagtaaac----aaattaacaaggtaattatagattgtgatcagtgc-tttgaagaacacaaagt-ggtaatataagaggaattaactggaggaggtatatactacctttaataggatgttagaaaaagctcc-------tctgaggagg-------------------tgactgatg---agaaggagccggcagtg-agaagagttgggggagagccctttc-acagc-----------aacaacagcaaatgcagtgcc--tctgaagtgggaaagctcttggAGACGTATGAAGTGTGATGACAATGG-------------------------CTTGATGtgagatt---------------gaaaaggtactaagagccaagctgtgtaggaccttagggaccagaataaggag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           211213 486 +    515838 TTATCCATT-Cact---taattattcaacatctatttactaag----cacctactatgtaccatgcattgttctgggagttacgga--cagtggagaacaagccggccatagtcccttgt-cctctggaaatttagattccattgaaa-aaggc----caacaataagcaagtaaacaaataaattaacaaggtaattacagattgtgatcagtgc-tttgaagaacacaaagt-ggtaatataacaggaattaactggaggaggtgtgtactacatttaataggatgttagaaaaagctcc-------tctgaggagg-------------------tgactgatg---agagggagctggcagtg-acaagagttgggggagagccctctcaacagc-----------aacaacagcagatgtagcacc--tctgaagtgggaaagctcttgaagatgtatgaagtgtgatgacaatgg-------------------------cttgatgtgagatt---------------gaaaaggtactaagagccaagctgtgtgggaccttagggaccaggataagga-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     843079 484 -   1771730 TCATCCATC-Cact---taattattcaacagctatttactgag----cacctactatgcaccatgcattgttctaggagttaggga--cagtggagaacaagccaagcatagtcccttgt-cctctggaaatttagattccattgaaa-aaggc----caacaataagcaagtaaacaaataaattaacaaggtaattacagattgtgatcagtgc-tttgaagaacacaaagt-ggtaatataagaggaattaactggaggaggtgtgtactacgtttaataggatgttagaaaaagctcc-------tctgaggagg-------------------tgactgatg---agagggagccggcagtg-agaagggttgggggagagccctctcaacagc-----------aacaacagcagatgcag---c--tctgaggtgggaaagctcttgaagacgtatgaagtgtgaccacaatgg-------------------------cttgatgtgagact---------------aaaaaggtactaagagccaagctgtgtaggaccttagggaccaggataaggag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     328819 486 -    383796 TCATCCATT-Cact---taattattcaacagctattta-taag----cacctactatgtaccatgcattgttctaggagttaggga--cagtggagaacaagccagccatagtcccttgc-cctctggaaatttagattccattgaaa-aaggc----caacaataagcaagtaaacaaataaattaacaaggtaattacagattgtgatcagtgc-tttgaagaacacaaagt-ggtaatataagaggaattaactggaggaggtgtgtactacctttaataggatgttagaaaaagctcc-------tctgaggagg-------------------tgactgatg---agagggagccggcagtg-agaagagttgggggagagccctctcaacagc-----------aacaacagcagatgcagcgcc--tctgaagtgggaaggctcttgaagacgtatgaagtgtgacgacaatgg-------------------------cttgatgtgagatt---------------gagaaggcactaagagccaagctgtgtaggatcttagggaccaggataaggag
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           259975 500 +  18854210 TCATCCATT-Catt---taatcatccagttactatttactaaa----cacctactatatgtcaaacactgttctaggagttagggatgcaatggagaacaagccagacatggtccc-tgt-cctctggcaatttagattctattaggg-gagac----caacaataagcaa--------ataaattaacaagataattatagatc-tgataagtgc-tttgaagactacaaagtgggtaacataagaggaattaactagaggaggtattttctactgttaatagggtgttagaaaacactcc-------tctgaggaggtgacatttgagaggagccctgactgatg---agaggaagacagtagtgaagaagagttaggggaa------------ggccttctgggcatagaaagagctggtgcaaagccctccccaagtgggaAAGATCTTGAAGAAATGTGAAATGTGATAagaatgg-------------------------ttaaacatgatatt---------------ggagagatattataagccaagctgtgcagaacccgagagaccaggataaggg-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58050692 439 -  94987271 TCACTCACCACACTGAATGAtcattcaagaactgttt-ctaaa----cacccgatgtattcttatcactgtcagaagagatggggg--ta-caaagcagaagtcagacatggtttcttgt-ccttgggcaatttaaattgtattggca-gaaac----taataatgaacaagtaaacagataaattagcaagataattatagattataac---tgc-tctgaggaatataaagaggctaatataccaggaattaactggaggaggcatg---gagctttaataggataatagatggatctctgttgacatttgagcaga---------------gctctgacagatg---agagggaccc-ataatg-agaagagctgcggaag------------agt-----------catcttggta---gCAGCAGT--CTTGTA------------------AC----------TGACCAAGAAGG-------------------------TTCAACATGGGATA---------------GGAGAGATGCCAGAAGC----------AGTATCTTAGGG-TCAGGATAAGAA-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26301109 476 +  26524999 TTGTCCATT-CGGC---TCCTGGCtcagcagtgacgtactgag----ggcctcctatgtgtca------------------gagga--caaaggtggccaagccagccactgtcccttatccctccagcaagttagattctgttggga-aagac----taaccataagcaagtaaacaaataaattaacaagataattacaga-catgataagtgc-tttgcagaatatcaaatgggtgacgtaagaggaattgcctggaggaggtgtgtaccacttctaatagggggttagaaaacgcttc-------tcgggggagg-----------------------tgatgtttgagcggagccctgggtg-ccaag---ctggagcc------------agc-----------agcgggaacagatct-----t--gctgaagag----------TAC--GTGCACCAAGTGTGATGCCGTTGGTGGTTCTTTTTCTTTTTTCTTTTTtttttttttaagattttatttatttattcatgagagacacagagaga-aagagaggcagagacacaggcagagggagaagcag
i canFam3.chr35            I 426 I 167
s dasNov3.JH580105             8257 440 -     45298 TCACCCATT-CAAC---AACTTAAACAGACCCAAACGGTTAAGATTTCATTTACAAAGCTGCGTGTGTT-------------------TAGTTTTTCATCCACCCACTATAAGTGCTT---CCTTTG--AGTTAGGATACTGTAGGAACAAAGCAGCTCAGCAACAAACGAGTAAAC----AAGCTCACAGAGTACTCCTGGCTTGAGGCGAGCGCGCCTTGAGACTACAAAGCGGGC-CTTTACGAGGAGTCTGCCGGAGCAGG--TGCAGCACTTCTGACA------------------C-------TGTGAGGAGG--------TGGCTGGCGCCTGACTGACG---GGAGGGAGCCGG--GGG-AGAAGGGCTGGCCAGG-GCCGGCCAGGCAGC-----------GCGGGGAGCAGGGGCCCAGGC--CCTGAGG-GGGGAAGCTCGGGATGGAGCATGGGGCGGGC-----ATGG--------------------------TTGACGTGGG-CT---------------GGAG-GGCCCGAGGAGCCA----GTGGAGGGCCC---GCTCCAGGCCAG----
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               307356 876 + 123392446 I
e proCoq1.NW_012149775v1     111788 1052 -   1411461 I

a score=310084.000000
s hg38.chr6_GL000254v2_alt  1431581 35 +   4827813 ttgatcgttgttctaagagcagtggaatgccactg
s panTro5.chr6             30300918 35 + 175400573 ttgatctttgttctaagagcagtggaatgccactg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30535304 35 + 173848474 ttgatctttgttctaagagcagtggaatgccactg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     242418 35 +   2037526 ttgatctttgttctaagagcagtggaatgccactg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74909720 35 + 122973662 ttgatctttgttctaagagcagtggaatgccactg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30788778 35 + 172585720 ttgatctttgttctgagagcaatgaaatgacactg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30078301 35 - 170955103 ttgatctttgttctgagagcaatgaaatgacactg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     327612 35 +   1495729 ttgatctttgttctaagagcaatggaatgacactg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     425473 35 -    863181 ttgatctttgttctaagagcaatggaatgacactg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29577523 35 -  71996105 ttgatctttgttctaaaagcaatggaatgacactc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     266732 35 -    735854 ttgatctttgttctaagagcaatggaatgacactg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     215622 35 -   1829203 ttgatctttgttctaagagcagtgaaatgacactg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30387993 28 + 171630274 -------ttgttctaagagtagaggaatgccactg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           211699 28 +    515838 -------ctactctaagagtagaggagtgccacta
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     843563 28 -   1771730 -------ttgttctaagagcagaggaatgccgctg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     329305 28 -    383796 -------ttgttctaagagtagaggaatgccgctg
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           260475 30 +  18854210 -----ctctgttttcagagcagcaaaatgccactg
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58051131 12 -  94987271 -----CTTTGCTTT------------------CTT
i mm10.chr17               C 0 C 0
s dasNov3.JH580105             8697 30 -     45298 -----CGCCCTCCTAAGAGCCGGGGGAGGCCCCCG
i dasNov3.JH580105         C 0 I 38
e micMur3.chr6               307356 876 + 123392446 I
e proCoq1.NW_012149775v1     111788 1052 -   1411461 I
e canFam3.chr35            26301585 167 +  26524999 I

a score=313987.000000
s hg38.chr6_GL000254v2_alt  1431616 34 +   4827813 agtagctgtaagtgtgatatttacgtggtctaat
s panTro5.chr6             30300953 34 + 175400573 agtagctgtaagTGTGATATTTATGTGGTCTAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30535339 34 + 173848474 agtagctgtaagtgtgatatttatgtggtctaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     242453 34 +   2037526 agtagctgtaagtgtgatatttacgtggtctaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74909755 34 + 122973662 aggagctgtaagtgtgatatttacatggtctaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30788813 34 + 172585720 aggagctgtaagtgtgatatttacatggtctaaT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30078336 34 - 170955103 aggagctgtaagtgtgatatttacatggtctaaT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     327647 34 +   1495729 aggagctgtaagtgtgatatttacatggtctaaT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     425508 34 -    863181 aggagctgtaagtgtgatatttacatggtctaaT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29577558 34 -  71996105 aggagctgtaagTGTGATATTTACTTGGTCTAat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     266767 34 -    735854 aggagctgtaagtgtgatatttacatggtctaaT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     215657 32 -   1829203 aggatctgtaagtgtgatatttacatggtcta--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30388021 30 + 171630274 aggagctttaagTGTGGTGTTTACATGGTC----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           211727 30 +    515838 aggagccttaagtgtggtatttacatggtc----
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     843591 30 -   1771730 aggagctttaagtgtggtatttacatggtc----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     329333 30 -    383796 agaagctttaagtgtggtatttacatggtc----
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           260505 34 +  18854210 aagacctttaagtgggggatttacatggtccaat
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58051143 28 -  94987271 CTGAACCTTAAGTGGAGAAATTATCTGG------
i mm10.chr17               C 0 C 0
e micMur3.chr6               307356 876 + 123392446 I
e dasNov3.JH580105             8727 38 -     45298 I
e proCoq1.NW_012149775v1     111788 1052 -   1411461 I
e canFam3.chr35            26301585 167 +  26524999 I

a score=1045466.000000
s hg38.chr6_GL000254v2_alt  1431650 128 +   4827813 ggat----tgattgattgattgattgattgtagagatgggatccggctgtgttgcccaggctgatctcaagctcctggcttcaatcaatcctcccactttggcctcatctcccaaagagctgagattatagg
s panTro5.chr6             30300987 132 + 175400573 GGATGgattgattgattgattgattgattgtagagatgggatctggctgtgttgcccaggctggtctcaagctcctggcttcaatcaatcctcccactttggcctcatctcccaaagagctgagattatagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30535373 128 + 173848474 ggat----tgattgattgattgattgattgtagagatgggatctggctgtgttgcccaggctggtctcaagctcctggcttcaatcaatcctcccactttggcctcatctcccaaagagctgagattatagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     242487 128 +   2037526 ggat----tgattgattgattgattgattgtagagatgggatctggctgtgttgcccaggctggtctcaagctcctggcttcaatcaatcctcccactttggcctcatctcccaaagagctgagattatagg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74909789 128 + 122973662 tgat----tgattgattgattgattgattgtagagatgggatctggctgtgttgcccaggctggtctcaagctcctggcttcaatcaatcctcccactttggcctcagctcccaaagagctgagattatagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30788847 131 + 172585720 Cgattgattgattgactgattgattgattgtagagatggattctggctgcgttgcccaggctggtctcaagctcttggcttcaatcaatcc-cccaccttggcctcagctcccaaacagctgagataatagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30078370 131 - 170955103 Cgattgattgattgactgattgattgattgtagagatggattctggctgcgttgcccaggctggtctcaagctcttggcttcaatcaatcc-cccaccttggcctcagctcccaaacagctgagataatagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     327681 131 +   1495729 Cgattgattgattgactgattgattgattgtagagatggattctggctgcgttgcccaggctggtctcaagctcttggcttcaatcaatcc-cccaccttggcctcagctcccaaacagctgagataatagg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     425542 131 -    863181 Cgattgattgattgactgattgattgattgtagagatggattctggctgcgttacccaggctggtctcaagctcttggcttcaatcaatcc-cccaccttggcctcagctcccaaacagttgagataatagg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29577592 131 -  71996105 cgattgattgattgactgattgattgattgtagaggtggattctggctgtgttgcccaggctggtctcaagctcttggcttcaatcaatcc-cccaccttggcctcagctcccaaacagctgagataatagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     266801 131 -    735854 Cgattgattgattgactgattgattgattgtagaggtggattctggctgcgttacccaggctggtctcaagctcttggcttcaatcaatcc-cccaccttggcctcagctcccaaacagctgagataatagg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     215689 129 -   1829203 --attgattgattgattgattgattgattgGagagatgggttctggctgcattgcccaggctggtctcaagctcctggcttcaatcaatcc-cccaccttggcctcagctcccaaacagctgagataatagg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30388051 119 + 171630274 --------CAGTTGATTGATTGGTTGCttttagagatgggatctgcctgtgttgcccacgctggtctcaaactcctggcttcgatcaatcctctcactgtggc-----ctcccaacgagccgagattatagg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           211757 119 +    515838 --------CAGTTGATTGATTGGTTGCttttagagatgggatctgcctatgttgcccaggctggtctcaaactcctggtttcaatcaatcctctcaccttggc-----ctcccaacgagctgagattatagg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     843621 119 -   1771730 --------CAGTTGATTGATTGGTTGCttttagagatgggatctgcctgtgttgcccaggctggtctcaaactcctggctttgatcagtcctttcaccttggc-----ctcccaacgagctgagattatagg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     329363 116 -    383796 --------cggttgatgGATTGGTTGCttttagagatgggatctgcccg---tgcccaggctggtcccaaattcctggcttcgatcaatcctctcaccttggc-----ctcccaacgagctgagattatagg
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58051171   8 -  94987271 ------------------------------------------------------CCCAGGTT----------------------------------------------------------------------
i mm10.chr17               C 0 C 0
e micMur3.chr6               307356 876 + 123392446 I
e dasNov3.JH580105             8727  38 -     45298 I
e proCoq1.NW_012149775v1     111788 1052 -   1411461 I
e canFam3.chr35            26301585 167 +  26524999 I
e otoGar3.GL873550           260539   0 +  18854210 C

a score=271633.000000
s hg38.chr6_GL000254v2_alt  1431778 25 +   4827813 cataagctacca-cactcagcatgat
s panTro5.chr6             30301119 25 + 175400573 cataagctacca-cactcagcATGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30535501 25 + 173848474 cataagctacca-cactcagcatgat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     242615 25 +   2037526 cataagctacca-cactcagcatgat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74909917 25 + 122973662 cataagctacca-cactcagcatgat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30788978 25 + 172585720 cataagctacca-cactcagcATGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30078501 25 - 170955103 cataagctacca-cactcagcATGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     327812 25 +   1495729 cataagctacca-cactcagcATGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     425673 25 -    863181 cataagctgcca-cactcagcATGAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29577723 25 -  71996105 cataagctgcca-cactcagcATGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     266932 25 -    735854 cataagctgcca-cactcagcATGAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     215818 25 -   1829203 cataagctacca-cactcagcatgat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30388170 25 + 171630274 cataagctacca-cactcagccTGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           211876 25 +    515838 cataagctgcca-cactcagccTGAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     843740 25 -   1771730 cataagctgcca-cactcagccTGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     329479 25 -    383796 cataaactacca-cactcagccTGAT
i aotNan1.NW_018496904v1   C 0 C 0
s canFam3.chr35            26301752 26 +  26524999 CACGAGCAGCCATCATGTGGCCAGGT
i canFam3.chr35            I 167 C 0
e micMur3.chr6               307356 876 + 123392446 I
e mm10.chr17               58051179  0 -  94987271 C
e dasNov3.JH580105             8727 38 -     45298 I
e proCoq1.NW_012149775v1     111788 1052 -   1411461 I
e otoGar3.GL873550           260539  0 +  18854210 C

a score=267734.000000
s hg38.chr6_GL000254v2_alt  1431803 24 +   4827813 ttatgtattttgaagctcattttg
s panTro5.chr6             30301144 24 + 175400573 TTATTTATTTTGAAGCTCATTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30535526 24 + 173848474 ttatttattttgaagctcattttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     242640 24 +   2037526 ttatgtattttgaagctcattttA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74909942 24 + 122973662 ttatgtattttgaagctcattttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789003 24 + 172585720 TTACGTATTTTGAAGCTCATTTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30078526 24 - 170955103 TTACGTATTTTGAAGCTCATTTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     327837 24 +   1495729 TTATGTATTTTGAAGCTCATTTTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     425698 24 -    863181 TTACATATTTTGAAGCTCATTTTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29577748 24 -  71996105 TTATGTATTTTGAAGCTCATTTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     266957 24 -    735854 TTACATATTTTGAAGCTCATTTTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     215843 24 -   1829203 ttacgtattttgaagctcattttg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30388195 24 + 171630274 TTGTATATTTTGAAGCTCATTTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           211901 24 +    515838 ATGCGTATTTTGGGGCTCATTTTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     843765 24 -   1771730 TTGTGTATTTTGAGGCTCATTTTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     329504 24 -    383796 TTGTGTATTTTGAGGCTTATTTTG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           260539 24 +  18854210 ttttgtatttagaagTGCATTTTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58051179 23 -  94987271 TTCTGTATCTAGAAGCCCATCCT-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26301778 24 +  26524999 CTGTGTGGTCAGAGCCCCACATAG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               307356 876 + 123392446 I
e dasNov3.JH580105             8727 38 -     45298 I
e proCoq1.NW_012149775v1     111788 1052 -   1411461 I

a score=632843.000000
s hg38.chr6_GL000254v2_alt  1431827 61 +   4827813 TCCTAGTAGTCTTTTCTCTCAGTTTTCTTTTTCTAATTCCTATTCCCCTTCAC---ATTATTTA
s panTro5.chr6             30301168 61 + 175400573 TCCTAGTAGTCTTTTCTCTCAGTTTTCTTTTTCTAATTCCTATTCCCCTTCAC---ATTATTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30535550 61 + 173848474 TCCTAGTAGTCTTTTCTCTCAGTTTTCTTTTTCTAATTCCTATTCCCCTTCAC---ATTATTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     242664 61 +   2037526 TCCTAGTAGTCTTTTCTCTCAGTTTTCTTTTTCTAATTCCTATTCCCCTTCAC---ATTATTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74909966 60 + 122973662 TCCTAGTAGTCTTTTCTCTCAGTTTTC-TTTTCTAATTCCTATTCCCCTTCAC---ATTATTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789027 60 + 172585720 TCCTAGTAGTCTTTTCTCTCAGTTTTC-TTTTCTAATCCCCATCCCCCTTCAC---ATTATTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30078550 60 - 170955103 TCCTAGTAGTCTTTTCTCTCAGTTTTC-TTTTCTAATTCCCATCCCCCTTCAC---ATTATTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     327861 60 +   1495729 TCCTAGTAGTCTTTTCTCTCAGTTTTC-TTTTCTAATTCCCATCCCCCTTCAC---ATTGTTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     425722 60 -    863181 TCCTAGTAGTCTTTTCTCTCAGTTTTC-TTTTCTAATTCCCATCCCCCTTCAC---ATTATTTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29577772 60 -  71996105 TCCTAGTAGTCTTTTCTCTCAGTTTTC-TTTTCTAATTCCCATCCCCCTTCAC---ATTATTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     266981 60 -    735854 TCCTAGTAGTCTTTTCTCTCAGTTTTC-TTTTCTAATTCCCATCCCCCTTCAC---ATTATTTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     215867 60 -   1829203 TCCTAGTAGTCTTTTCTGTCAGTTTTC-TTTTCTAATTCCCATCCCCCTTCAC---ATTATTTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30388219 60 + 171630274 TCCTAGTAGTCTTTTCTCTCAGTTTTC-TTTTCTAATTAACATCCCCCTTTAC---ATTATTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           211925 60 +    515838 TCCCAGTAGTCTTTTCTCTCAGTTTTC-TTTTCTAATTAACATCCCCCTTCAC---ATTATTCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     843789 59 -   1771730 -ACTAGTAGTCTTTTCTCTCAGTTTTC-TTTTCTAATTAACATCCCCCTTCAC---ATTATTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     329528 60 -    383796 TCCTAGTAGTCTTTTCTCTCAGTTTTC-TTTTCTAATTAACATCCCCCTTCAC---ATTATTCA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           260563 55 +  18854210 TCTTATTAGTCTTTTGTCTCCATTTTC-TTTTCTG--------TCCCCTTCACGTTATTATTTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58051202 39 -  94987271 --TCGTTAGCCTCTTCATTC------C-TTTTCTTATTCTGGGTTTTC----------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26301802 32 +  26524999 CCCCAG------------CCACCCTCC-TCTTCT----------------TGC---ATGGTCAA
i canFam3.chr35            C 0 I 7
s dasNov3.JH580105             8765 55 -     45298 TCCTCGTGGTCTT----CTCGGTTCCC-TTCCCTAAGGCTGA-CCTCCTTCAC---GTCGTTTA
i dasNov3.JH580105         I 38 C 0
e micMur3.chr6               307356 876 + 123392446 I
e proCoq1.NW_012149775v1     111788 1052 -   1411461 I

a score=1105414.000000
s hg38.chr6_GL000254v2_alt  1431888 87 +   4827813 CATTCAAGACGATCATCTCATTTCCATGTCCACTTCCCCATCGGGGAGAATAGGTCTT-CCAAA-CAAGGTATTTATTAACCTGTACAA
s panTro5.chr6             30301229 87 + 175400573 CATTCAAGACGATCATCTCATTTCCATGTCCACTTCCCCATTGGAGAGAATAGGTCTT-CCAAA-CAAGTTATTTATTAACCTGTACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30535611 87 + 173848474 CATTCAAGACGATCATCTCATTTCCATGTCCACTTCCCCATTGGAGAGAATAGGTCTT-CCAAA-CAAGTTATTTATTAACCTGTACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     242725 87 +   2037526 CATTCAAGACGATCATCTCATTTCCATGTCCACTTCCCCATCGGGGAGAATAGGTCTT-CCAAA-CAAGTTATTTATTAACCTGTACAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910026 87 + 122973662 CATTCAAGACGATCATCTCATTTCCATGTCCACGTCCCCATCGGGGAGAATAGGTCTT-CCAAA-CAAGTTATTTATTAACTCGTACAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789087 87 + 172585720 CATTCAAGATGATAATCTCATTTCCATGTCCACTTCCCCATCAGGGAGAATAGGTCTT-CCAAA-CAAGTTATTTATTATCCCGTATAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30078610 87 - 170955103 CATTCAAGATGATAATCTCATTTCCATGTCCACTTCCCCATCAGGGAGAATAGGTCTT-CCAAA-CAAGTTATTTATTATCCCGTATAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     327921 87 +   1495729 CATTCAAGATGATAATCTCATTTCCATGTCCACTTCCCCATCAGGGAGAATAGGTCTT-CCAAA-CAAGTTATTTATTATCCCGTATAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     425782 87 -    863181 CATTCAAGATGATAATCTCATTTCCATGTCCACTTCCCCATCAGGGAGAATAGGTCTT-CCAAA-CAAGTTATTTATTATCCCGTATAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29577832 87 -  71996105 CATTCAAGATGATAATCTCATTTCCATGTCCACTTCCCCATCAGGGAGAATAGGTCTT-CCAAA-CAAGTTATTTATTATCCTGTATAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267041 87 -    735854 CATTCAAGATGATAATCTCATTTCCATGTCCACTTCCCCATCAGGGAGAATAGGTCTT-CCAAA-CAAGTTATTTATTATCCCGTATAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     215927 84 -   1829203 CATTCAA---GATAATCTCATTTCCATGTCCACTTCCCCATCAGGGAAAACAGGTCTT-CCAAA-CAAGTTATTTATTATCCTGTACAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30388279 86 + 171630274 CATTCAAGATGATCATTGAATTTCCATGTCTACTTCCCCATCAGGAAGAATAAGTTTT-CCAAA-CAAGTTATTTATTAACCCAT-CAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           211985 88 +    515838 CATTCAAGATGATCATCGAATTTCCATGTCCACTTCCCCACCAGGGAGAATAAGTTTTCCCAAA-CAAGTTATTtattaacccgtacaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     843848 87 -   1771730 CATTCAAGATGATCATCGAATTTCCATGTCCACTTCCCCATCAGGGAGAATAAGTTTT-CCAAA-CAAGTTATTTATTAACCCGTACAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     329588 87 -    383796 CGTTCAAAATGATCATCGAATTTCCATGTCCACTTCCCCATCAGGGAGAATAAGTTTT-CCAAA-CAAGTTATTTATTAACCCATACAA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               308232 86 + 123392446 CATTCAAGGTAATCACCCCATTTCCATGTCCACT-TCCCATTACAGAGAGTAGGTCTT-CCAAA-CAAATTATTTATTAACTTATATAG
i micMur3.chr6             I 876 C 0
s otoGar3.GL873550           260618 87 +  18854210 CACGCAAGATGATCATCCCATTTCCATGTCCACTCCCCCATTAGGGAGAATGGAACTT-CCAAA-CAAATTATTTATTAACCTGTACAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58051241 73 -  94987271 ----CATGCCATTTATCTCTCTTTCACATCCACCTCATCATC-----------TTCTT-ACAAATCAACAAGTTTCTTCACCTGCCCAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26301841 71 +  26524999 CATTCAC-------------TCTCTGTGCCTGCTTTCCCATCAGG--GGACGAGCCTT-CCAGA-AAAGTAATTTGTTAACCTGTGCA-
i canFam3.chr35            I 7 C 0
s dasNov3.JH580105             8820 81 -     45298 CATTTACG-TGAGCGTCCCATCTCCA-GGCCACTTCC----GGCAGGGGCTGAGTCTC-CCAAA-CAAGGAGCTTGTTAACCCGTGCTG
i dasNov3.JH580105         C 0 C 0
e proCoq1.NW_012149775v1     111788 1052 -   1411461 I

a score=2078673.000000
s hg38.chr6_GL000254v2_alt  1431975 168 +   4827813 GGATCGCTAGTAAGTGCACCAAATATAGCTAATTTGATTCTGGCTCCCACCTC-TATTAAAGACTTCAAAgaa--tcatagatttgtagaatgctagagttgtagggaacattaacaatgt-gtagtctagcccttacaacatggataagaaaattgattcccagagagatg
s panTro5.chr6             30301316 168 + 175400573 GGATCGCTAGTAAGTGCACCAAATATAGCTAATTTGATTCTGGCTCCCACCTC-TATTAAAGACTTCAAAgaa--tcttagatttgtagaatgctagagttgtagggaacattaacaatgt-gtagtctagcctttacaatatggataagaaaattgattcccagagagatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30535698 168 + 173848474 GGATCGCTAGTAAGTGCACCAAATATAGCTAATTTGATTCTGGCTCCCACCTC-TATTAAAGACTTCAAAgaa--tcgtagatttgtagaatgctagagttgtagggaacattaacaatgt-gtagtctagcctttacaatatggataagaaaattgattcccagagagatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     242812 168 +   2037526 GGATCGCTAGTAAGTGCACCAAATATAGCTAATTTGATTCTGGCTCCCACCTC-TATTAAAGACTTCAAAgaa--tcatagatttgtagaatgctagagttgtagggaacattaacaatgt-gtagtctagcccttacaatatggataagaaaattgattcccagagagatg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910113 168 + 122973662 GGATCGCTAGTAAGTGCACCAAATATAGCTAATTTGATTCTGGCTCCCACCTC-TAGTAAAGACTTCAAAgaa--tcatagattcgtagaatgctagagttgaagggaacattaacaatgt-gtagtctagcccttacaatatggataagaaaattgattcccagagagatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789174 168 + 172585720 GGATCGCTAGTAAGTGCACCAAATGCAGCTAATTTTTTTCTGGCTCCCACCTC-TATTAAATACATCAAAgaa--tcatagatttgtagaatgttagagttgaagggaacattaacaatgt-gtcatctagcccttacaatatgaataagaaaattgatgcccagagagatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30078697 168 - 170955103 GGATCGCTAGTAAGTGCACCAAATGCAGCTAATTTTTTTCTGGCTCCCACCTC-TATTAAATACATCAAAgaa--tcatagatttgtagaatgttagagttgaagggaacattaacaatgt-gtcgtctagcccttacaatatgaataagaaaattgatgcccagagagatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328008 168 +   1495729 GGATCGCTAGTAAGTGCACCAAATGTAGCTAATTTTTTTCTGGCTCCCACCTC-TATTAAATACTTCAAAgaa--tcatagatttgtagaatgttagagttgaagggaacattaacaatgt-gtagtctagcccttacaatatggataagaaaattgatgcccagagagatg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     425869 163 -    863181 GGATCGCTAGTAAGTGCACCAAAT-----TAATTTTTTTCTGGCTCCCACCTC-TATTAAATACATCAAAgaa--tcatagatttgtagaatgttagagttgaagggaacattaacaatgt-gtcgtctagcccttacaatatgaataagaaaattgatgcccagaaagatg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29577919 168 -  71996105 GGATCGCTAGTAAGTGCACCAAATGTAGCTAATTTTTTTCTGGCTCCCACCTC-TATTAAATACATCAAAgaa--tcatagatttgtagaatgttagagttgaagggagcattaacaatgt-gtcgtctagcccttacaatatgaataagaaaattgatgcccagagagatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267128 168 -    735854 GGATTGCTAGTAAGTGCACCAAATGCAGCTAATTTTTTTCTGGCTCCCACCTC-TATTAAATACTTCAAAgaa--tcatagatttgtagaatgttagagttgaagggaacattaacaatgt-gtcgtctagcccttacaatatgaataagaaaattgatgcccagagagatg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216011 168 -   1829203 GGATCGCTAGTAAGTGCACTAAATGTAGCTAATTTTATTCTGGCTCCCACCTC-TATTAAATACTTCAAAgaa--tcatagatttgtagaatgttagagttgaagggaacattaacaatgt-gtagtctagcccttacaatatggataagaaaattgatgcccagagagatg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30388365 168 + 171630274 GGATCTCTAGTAAGTGCACCAAATATAGCTAATTTGCCTCTGCCTCTCACCTC-TATTAAAGACTTCAGAgaa--tcatggatttgtagaatgttggagttgaaagggacactaacaatgt-gtagtctagcccttataatgtggataagaaaattgatacccagagagatg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           212073 168 +    515838 gggtctctagtaagtgcaccaaatatggctaatttggctctgcctttcacctc-tatcaaagacttcaaagaa--tcatagatttgtagaatgttggagttgaaagggacactaacaatgt-gtagtctagcccttataatatggataagaaaattgatacccagagagatg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     843935 164 -   1771730 GGCTCCCTAGTAAGTGCACCAAATATAGCTAATTTGACTCTGCCTCTCACCTC-TATTAAAGACTTCAAAgaa--tcatagatttgtagaatgttggagttgaaagggacaccaacaatgt-gtagtttagcccttacaatatggataaga----ccatgcccagagagatg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     329675 168 -    383796 GGATCTCTAGTAAGTGCGCCGAATATAGCTAATTTGACTCTGCCTCTCACTTC-TATTAAAGATCTCAAAgaa--tcatagatttgtagaatgttggagttgaaagggacactaacaatgt-gtattctagcccttacaatatggataagaacattgatacccagagagatg
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               308318 163 + 123392446 GGATCTCCAGTAAGGGCACCAAATACAGCTAATTTCATTCTGGTGCCCACCTC-TACTA---AGTTCAAAgaa--tcctagatttatagaatattaaggttgaaaggcatatttacaatgt-gtagtctaacccttacaatatagataagaaaattcatgccc--agagaTG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     112840 165 -   1411461 GGATCTCCAGTAAGTGTACCAAATAGAGCCAATTTCATTCTGGCTCCCACCTC-TACTA---AGTTCAAAgaa--tcctagaactgtagaatattagggttgaaagggatgtttacaatgt-gtagtctaacccttacaatatagataagaaaattcatgcccagagagatg
i proCoq1.NW_012149775v1   I 1052 C 0
s otoGar3.GL873550           260705 126 +  18854210 --------------------------------------------TCCCACCTCTTATTAGAGAGTTCAAAGAACTCTCtagatttatagaatattagagttgaaaagaacactaatagtct-gtagt-taatccttacaatataggtaagaaaattcatgcccagagagatg
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58051314  63 -  94987271 ----TGTCTCCAAATGTACCACATGTAGCTGATTT-AGTCTGGCTCCCAAT---CATTAGAGA------------TC--------------------------------------------------------------------ATAAGA---------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26301912 144 +  26524999 -------------GCACACCATGTGCAACC-ATTTGGTTCTGG-TCCGGCTCT-TACTATGGAGTGTGCAAAA--CCCCAGATGGGCAGGATGTCACAGGTAAAAGGGACATTTAAAAAaa-atattttatttatt----tattcatgaga-----gacacacagagagagg
i canFam3.chr35            C 0 I 338
s dasNov3.JH580105             8901 145 -     45298 GGCCTGCCAGCGCCTGCCGCGAATGCAGCT-------------------CCTC-TGCTGGAGAGCCCTAAgag--tcgcgggtttgtagaacatcagagctgaaagg-acgataacaatctcgccctcccatcttcacgtcat--accgggaagcggaggcccagagaCG--
i dasNov3.JH580105         C 0 C 0

a score=1371214.000000
s hg38.chr6_GL000254v2_alt  1432143 96 +   4827813 aTCTT-GCTGGTGTGTAAGTAGGGAAAACTTTCGGATCCTCATCTGTCAAGAATGCAGGAGCAGGTTCCTTCCTGTCTTTTAGGCGCCTGTTTCAAT
s panTro5.chr6             30301484 96 + 175400573 aTCTT-GTTGGTGTGTAAGTAGGGAAAACTTTCGGATCCTCATCTGTCAAGAATGCAGGAGCAGGTTCCTTCCTGTCTTTTAGGCGCCTATTTCAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30535866 96 + 173848474 aTCTT-GCTGGTGTGTAAGTAGGGAAAACTTTCGGATCCTCATCTGTCAAGAATGCAGGAGCAGGTTCCTTCCTGTCTTTTAGGCGCCTATTTCAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     242980 96 +   2037526 aTCTT-GCTAGTGTGTAAGTAGGGAAAACTTTCGGATCCTCATCTGTCAAGAATGCAGGAGCAGGTTCCTTCCTGTCTTTTAGGCGCCTATTTCAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910281 97 + 122973662 aTCTTAGCTGGTGTGTAAGTAGGGAAAACTTTCTGATCCTCATCTGTCAAGAATGCAGGAGCAGGTTCCTTCCTGTCTTTTAGGCACCTATTTCAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789342 96 + 172585720 aCCTA-GCTGGTGCGTAAGTAGGGAAAACTTTCTGATCCTCATCCCTCAAGAATGCAGGAGCACGTTCCTTCCTGTCTTTTAGGCACCTATTTCAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30078865 96 - 170955103 aCCTA-GCTGGTGCGTAAGTAGGGAAAACTTTCTGATCCTCATCCCTCAAGAATGCAGGAGCACGTTCCTTCCTGTCTTTTAGGCACCTATTTCAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328176 96 +   1495729 aCCTA-GCTGGTGCGTAAGTAGGGAAAACTTTCTGATCCTCATCCCTCAAGAATGCAGGAGCACGTTCCTTCCTGTCTTTTAGGCACCTATTTCAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426032 96 -    863181 aCCTA-GCTGGTGCGTAAGTAGGGAAAACTTTCTGATCCTCATCCCTCAAGAATGCAGGAGCACGTTCCTTCCTGTCTTTTAGGCACCTATTTCAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578087 96 -  71996105 aCCTA-GCTGGTGCGTAAGTAGGGAAAACTTTCTGATCCTCATCCCTCAAGAATGCAGGAGCACGTTCCTTCCTGTCTTTTAGATACCTATTTCAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267296 96 -    735854 aCCTA-GCTGGTGCGTAAGTAGGGAAAACTTTCTGATCCTCATCCCTCAAGAATGCAGGAGCACGTTCCTTCCTGTCTTTTAGGCACCTATTTCAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216179 96 -   1829203 aCCTA-GCTGGTGTGTAAGTAGGGAAAACTTTCTGATCCTCATCCCTCAAGAATGCAGGAGCAGGTTCCTTCCTGTCTTTTAGGCACCTATTTCAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30388533 96 + 171630274 aTCTA-GCTGGTGTGTGAGTAAGGAAAACTTTCTGATCCTTATTCCTCAAGAATGCAGAAGCAGGTTCCTTCCTGTCTTTTAGGCACCTATTTCAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           212241 96 +    515838 aTCTA-GCTGGTGTGTAAGTAAGGAAAACTTTATGATCCTCATCCCTCAAGAATGCAGAAGCAGGTTTCTTCCTGTCTTTTAGGCACCTATTTCAAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     844099 96 -   1771730 GTCTA-GCTGGTGTGTAAGTAAGGAAAACTTTCTGATCCTCATCCCTCAAGAATGCAGAAGCAGGTTCCTTCCTGTCTTTTGGGCACCTATTTCAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     329843 96 -    383796 aTCTA-GCTGGTGTGGAAGTAAGGAAAACTTTCTGATCCTCATCCCTCAAGAATGCAGAAGCAGGTTCCTTCCTGTCTTTTAGTCACCTATTTCGAT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               308481 90 + 123392446 ATCTA-GCTGATGTG------GAGGAATCTTTCTGACCCTCATCCCTCAGGAGTGCAGGAGCAGCTTCCTTCCTGTCTCGTTGGCACCTGTTTCAAT
i micMur3.chr6             C 0 I 345
s proCoq1.NW_012149775v1     113005 90 -   1411461 aTCTA-GCTGGTGTG------GAGGAATCTTTCCAATCCTCATCCCTCAGGAGTGCAGGAGCAGCTTCCTTCCTGTCTCTTTGGCACCTGTTTCAAT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           260831 96 +  18854210 aTCTA-GCTGGTGTGTAAGTAAAGGAATCTTTCTGGCCCTCATTCCCCAAGAGTGCAGGAGCAGGTTCCTTCCTGTCTCTTTAGCACCTCTTTCACT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58051377 93 -  94987271 ---TA-ACTGATATATAAGTGGGAAACCCTTTCTAATTTTCATCCCTTGGGAGTGAAGAAATAGGCTTTTTTCTGTCTCATAGGCAGCTGTTTCAGA
i mm10.chr17               C 0 C 0
s dasNov3.JH580105             9046 79 -     45298 GCCTG-GCTTGT-----------AGCATCTTTCTGGTCCT-GTCCCTTAGGAGGCC--GAGCAGGC-CCTTCCTGCTCCT--GGCACCGATTTCGAT
i dasNov3.JH580105         C 0 C 0
e canFam3.chr35            26302056 338 +  26524999 I

a score=15561.000000
s hg38.chr6_GL000254v2_alt  1432239 1 +   4827813 T
s panTro5.chr6             30301580 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30535962 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243076 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910378 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789438 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30078961 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328272 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426128 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578183 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267392 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216275 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30388629 1 + 171630274 T
i calJac3.chr4             C 0 I 323
s saiBol1.JH378341           212337 1 +    515838 T
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     844195 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     329939 1 -    383796 T
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     113095 1 -   1411461 T
i proCoq1.NW_012149775v1   C 0 I 339
s otoGar3.GL873550           260927 1 +  18854210 T
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58051470 1 -  94987271 T
i mm10.chr17               C 0 C 0
e micMur3.chr6               308571 345 + 123392446 I
e dasNov3.JH580105             9125 0 -     45298 C
e canFam3.chr35            26302056 338 +  26524999 I

a score=9555.000000
s hg38.chr6_GL000254v2_alt  1432240 1 +   4827813 A
s panTro5.chr6             30301581 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30535963 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243077 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910379 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789439 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30078962 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328273 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426129 1 -    863181 A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578184 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267393 1 -    735854 A
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216276 1 -   1829203 A
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     844196 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     329940 1 -    383796 A
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58051471 1 -  94987271 A
i mm10.chr17               C 0 I 1
e micMur3.chr6               308571 345 + 123392446 I
e dasNov3.JH580105             9125 0 -     45298 C
e proCoq1.NW_012149775v1     113096 339 -   1411461 I
e canFam3.chr35            26302056 338 +  26524999 I
e saiBol1.JH378341           212338 0 +    515838 C
e otoGar3.GL873550           260928 1 +  18854210 I
e calJac3.chr4             30388630 323 + 171630274 I

a score=10920.000000
s hg38.chr6_GL000254v2_alt  1432241 1 +   4827813 A
s panTro5.chr6             30301582 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30535964 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243078 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910380 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789440 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30078963 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328274 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426130 1 -    863181 A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578185 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267394 1 -    735854 A
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216277 1 -   1829203 A
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30388953 1 + 171630274 a
i calJac3.chr4             I 323 C 0
s cebCap1.NW_016107755v1     844197 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 I 340
s aotNan1.NW_018496904v1     329941 1 -    383796 A
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           260929 1 +  18854210 A
i otoGar3.GL873550         I 1 C 0
e micMur3.chr6               308571 345 + 123392446 I
e mm10.chr17               58051472 1 -  94987271 I
e dasNov3.JH580105             9125 0 -     45298 C
e proCoq1.NW_012149775v1     113096 339 -   1411461 I
e canFam3.chr35            26302056 338 +  26524999 I
e saiBol1.JH378341           212338 0 +    515838 C

a score=-21566.000000
s hg38.chr6_GL000254v2_alt  1432242 4 +   4827813 GAAA
s panTro5.chr6             30301583 4 + 175400573 gaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30535965 3 + 173848474 G-AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243079 3 +   2037526 G-AA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910381 4 + 122973662 GAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789441 2 + 172585720 G--A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30078964 2 - 170955103 G--A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328275 2 +   1495729 G--A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426131 2 -    863181 G--A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578186 2 -  71996105 G--A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267395 2 -    735854 G--A
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216278 2 -   1829203 G--A
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30388954 2 + 171630274 --ga
i calJac3.chr4             C 0 I 2
s saiBol1.JH378341           212338 1 +    515838 ---A
i saiBol1.JH378341         C 0 I 2
s aotNan1.NW_018496904v1     329942 2 -    383796 --AA
i aotNan1.NW_018496904v1   C 0 I 337
s mm10.chr17               58051473 3 -  94987271 -TCA
i mm10.chr17               I 1 I 1
s dasNov3.JH580105             9125 1 -     45298 G---
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               308571 345 + 123392446 I
e proCoq1.NW_012149775v1     113096 339 -   1411461 I
e canFam3.chr35            26302056 338 +  26524999 I
e otoGar3.GL873550           260930 0 +  18854210 C
e cebCap1.NW_016107755v1     844198 340 -   1771730 I

a score=107912.000000
s hg38.chr6_GL000254v2_alt  1432246 14 +   4827813 AAAAAATATTggct
s panTro5.chr6             30301587 14 + 175400573 aaaaaatattggct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30535968 14 + 173848474 AAAAAATATTggct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243082 14 +   2037526 AAAAAAAATTggct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910385 14 + 122973662 AAAAAACATTggct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789443 14 + 172585720 AAAAAATATTggct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30078966 14 - 170955103 AAAAAATATTggct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328277 14 +   1495729 AAAAAATATTggct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426133 14 -    863181 AAAAAATATTggct
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578188 14 -  71996105 AAAAAATATTggct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267397 14 -    735854 AAAAAATATTggct
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216280 14 -   1829203 AAAAAATATTggct
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30388958 14 + 171630274 tcaggatatcggta
i calJac3.chr4             I 2 C 0
s saiBol1.JH378341           212341 12 +    515838 --AAAATATTCACT
i saiBol1.JH378341         I 2 C 0
s otoGar3.GL873550           260930 13 +  18854210 -AAAGATATTAACT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58051477 12 -  94987271 --AACATACCCAGT
i mm10.chr17               I 1 I 31
s dasNov3.JH580105             9126 14 -     45298 GAAAGGTCTTAACT
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               308571 345 + 123392446 I
e proCoq1.NW_012149775v1     113096 339 -   1411461 I
e canFam3.chr35            26302056 338 +  26524999 I
e aotNan1.NW_018496904v1     329944 337 -    383796 I
e cebCap1.NW_016107755v1     844198 340 -   1771730 I

a score=56023.000000
s hg38.chr6_GL000254v2_alt  1432260 4 +   4827813 gggc
s panTro5.chr6             30301601 4 + 175400573 gggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30535982 4 + 173848474 gggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243096 4 +   2037526 gggc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910399 4 + 122973662 gggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789457 4 + 172585720 gggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30078980 4 - 170955103 gggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328291 4 +   1495729 gggc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426147 4 -    863181 gggt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578202 4 -  71996105 gggc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267411 4 -    735854 gggc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216294 4 -   1829203 gggc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30388972 4 + 171630274 gggt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           212353 4 +    515838 GAGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     844538 4 -   1771730 gggc
i cebCap1.NW_016107755v1   I 340 C 0
s aotNan1.NW_018496904v1     330281 4 -    383796 gggc
i aotNan1.NW_018496904v1   I 337 C 0
s otoGar3.GL873550           260943 4 +  18854210 GAGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58051520 4 -  94987271 GAGC
i mm10.chr17               I 31 C 0
s dasNov3.JH580105             9140 4 -     45298 GAGC
i dasNov3.JH580105         C 0 I 854
e micMur3.chr6               308571 345 + 123392446 I
e proCoq1.NW_012149775v1     113096 339 -   1411461 I
e canFam3.chr35            26302056 338 +  26524999 I

a score=15447.000000
s hg38.chr6_GL000254v2_alt  1432264 3 +   4827813 acg
s panTro5.chr6             30301605 3 + 175400573 acg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30535986 3 + 173848474 acg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243100 3 +   2037526 acg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910403 3 + 122973662 acg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789461 3 + 172585720 gca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30078984 3 - 170955103 gca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328295 3 +   1495729 gca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426151 3 -    863181 gca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578206 3 -  71996105 gca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267415 3 -    735854 gca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216298 3 -   1829203 tca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30388976 3 + 171630274 gcg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           212357 3 +    515838 ACG
i saiBol1.JH378341         C 0 I 627
s cebCap1.NW_016107755v1     844542 3 -   1771730 gcg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     330285 3 -    383796 gca
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           260947 3 +  18854210 ACC
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58051524 3 -  94987271 AAG
i mm10.chr17               C 0 C 0
e micMur3.chr6               308571 345 + 123392446 I
e dasNov3.JH580105             9144 854 -     45298 I
e proCoq1.NW_012149775v1     113096 339 -   1411461 I
e canFam3.chr35            26302056 338 +  26524999 I

a score=12334.000000
s hg38.chr6_GL000254v2_alt  1432267 2 +   4827813 gt
s panTro5.chr6             30301608 2 + 175400573 gt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30535989 2 + 173848474 gt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243103 2 +   2037526 gt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910406 2 + 122973662 gt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789464 2 + 172585720 gt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30078987 2 - 170955103 gt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328298 2 +   1495729 gt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426154 2 -    863181 gt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578209 2 -  71996105 gt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267418 2 -    735854 gt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216301 2 -   1829203 gt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30388979 2 + 171630274 gt
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     844545 2 -   1771730 gt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     330288 2 -    383796 gt
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           260951 1 +  18854210 A-
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58051527 2 -  94987271 GA
i mm10.chr17               C 0 C 0
e micMur3.chr6               308571 345 + 123392446 I
e dasNov3.JH580105             9144 854 -     45298 I
e proCoq1.NW_012149775v1     113096 339 -   1411461 I
e canFam3.chr35            26302056 338 +  26524999 I
e saiBol1.JH378341           212360 627 +    515838 I

a score=225952.000000
s hg38.chr6_GL000254v2_alt  1432269 22 +   4827813 ggctcatgc-ctgtaa--------------tcccaac
s panTro5.chr6             30301610 22 + 175400573 ggctcatgc-ctgtaa--------------tcccaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30535991 22 + 173848474 ggctcatgc-ctgtaa--------------tcccaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243105 22 +   2037526 ggctcatgc-ctgtaa--------------tcccaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910408 22 + 122973662 ggcttacgc-ctgtaa--------------tcccaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789466 22 + 172585720 ggctcacgc-ctgtaa--------------tcccagc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30078989 22 - 170955103 ggctcacgc-ctgtaa--------------tcccagc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328300 22 +   1495729 ggctcatgc-ctgtaa--------------tcccagc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426156 22 -    863181 ggctcatgc-ctgtaa--------------tcccagc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578211 22 -  71996105 ggctcatgc-ctgtaa--------------tcccagc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267420 22 -    735854 ggctcatgc-ctgtaa--------------tcccagc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216303 22 -   1829203 gtctcatgc-ctgtaa--------------tcccaac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30388981 22 + 171630274 ggctcatac-ctgtaa--------------tcccagt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           212987 22 +    515838 ggctcatac-ctgtaa--------------tcccggc
i saiBol1.JH378341         I 627 C 0
s cebCap1.NW_016107755v1     844547 22 -   1771730 ggctcatac-ctgtaa--------------tcccagc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     330290 22 -    383796 ggctcatac-ctgtaa--------------tcccagc
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           260952 21 +  18854210 -GGATATGT-CTAGAG--------------TCAAAGC
i otoGar3.GL873550         C 0 I 280
s mm10.chr17               58051529 37 -  94987271 GGTCCATGCTCAGTAACATTGGATTTGATGCTCCAGC
i mm10.chr17               C 0 C 0
e micMur3.chr6               308571 345 + 123392446 I
e dasNov3.JH580105             9144 854 -     45298 I
e proCoq1.NW_012149775v1     113096 339 -   1411461 I
e canFam3.chr35            26302056 338 +  26524999 I

a score=1067877.000000
s hg38.chr6_GL000254v2_alt  1432291 115 +   4827813 actttgggaggctgagttgggcagatcacaaggtcaagagatcgagaccat-----------cctggccaacatg-gtgaaaccc------cgtctctactaaaaatacaaaagttagc-tgggc------atggtggca
s panTro5.chr6             30301632 115 + 175400573 actttgggaggctgagtcaggcagatcacaaggtcaagagatcgagaccat-----------cctggccaacatg-gtgaaaccc------cgtctctactaaaaatacaaaagttagc-tgggc------atggtggca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536013 115 + 173848474 actttgggaggctgagtcaggcagatcacaaggtcaagagatcgagaccat-----------cctggccaacatg-gtgaaaccc------cgtctctactaaaaatacaaaagttagc-tgggc------atggtggca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243127 115 +   2037526 actttgggaggctgagttgggcagatcacaaggtcaagagatcgagaccat-----------cctggccaacatg-gtgaaaccc------cgtctctaccaaaaatacaaaagttagc-ttggc------atggtggca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910430 115 + 122973662 aatttcggaggctgaggcgggcagatcacaaggtcaagagatcgagaccat-----------cctggccaacatg-gtgaaaccc------cgtctctactgaaaatacaaaagttagc-tgggc------gtggtggca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789488 115 + 172585720 actctgggaggctgaggcaggcagatcacgaggtcaagagatcgagcccat-----------cctggccaatgtg-gtgaaatcc------catctcttctaaaaatacaaaagttagc-tgggc------atggtggca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079011 115 - 170955103 actctgggaggctgaggcaggcagatcacaaggtcaagagatcgagcccat-----------cctggccaacgtg-gtgaaatcc------catctcttctaaaaatacaaaagttagc-tgggc------atggtggca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328322 115 +   1495729 actctgggaggctgaggcaggcagatcacaaggtcaagagatcgagcccat-----------cctggccaacgtg-gtgaaatcc------catctcttctaaaaatacaaaagttagc-tgggc------atggtggca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426178 115 -    863181 actctgggaggctgaggcaggcagatcacgaggtcaagagatcgagcccat-----------cttggccaacgtg-gtgaaatcc------catctcttctaaaaatacaaaagttagc-tgggc------atggtggca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578233 115 -  71996105 actctgggaggctgaggcaggcagatcatgaggtcaagagatcgagcccat-----------cctggccaacgtg-gtgaaatcc------catctcttctaaaaatacaaaagttagc-tgaga------atggtggca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267442 115 -    735854 actctgggaggctgaggcaggcagatcacgaggtcaagagatcgagcccat-----------cttggccaacgtg-gtgaaatcc------catctcttctaaaaatacaaaagttagc-tgggc------atggtggca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216325 115 -   1829203 actctgggaggctgaggcaggcagatcccaaggtcaagagatcgagcccat-----------cctggccaacatg-gtgaaatcc------catctcttctaaaaatacaaaagttaac-tgggc------gtggtggca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389003 114 + 171630274 actttgggaggctgaggcgggtggatcacgaggtcaggagatagagacaat-----------cctggccaacatg-gtaaaaccc------tgtctctatt-aaaataagaaaattagc-tgggc------atggtggca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213009 115 +    515838 actttgggaggccaaggcgggcggatcacaaggtcaggagttggagaccat-----------cgtggccaacatg-gtaaaaccc------tgtctctactaaaaataagaaaattaac-cggga------atggaggca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     844569 115 -   1771730 actttgggaggccgaggtggacggatcacgaggtcaggagatggagaccat-----------ccagaccaacatg-gtaaaacac------tgtctctactaaaaataagaaaattagc-tgggc------atgatggca
i cebCap1.NW_016107755v1   C 0 I 6
s aotNan1.NW_018496904v1     330312 115 -    383796 actttgggaggccaaggcaggcagatcacgaggtcaggagatggagaccat-----------cctggccaacatg-gtaaaaccc------tgtctctactaaaaataagaaaattagc-tgggc------atggtggca
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58051566 127 -  94987271 ----------AGCAAGAGAGATACGTAGCAgggat-ggcgatggagcccagtgacacagctacttgtcaaatatgtgtaaggccctgggttcaaccATGGTAATAAAAGAAAAG--AGCATGGGCTATTAAACAATCACA
i mm10.chr17               C 0 C 0
e micMur3.chr6               308571 345 + 123392446 I
e dasNov3.JH580105             9144 854 -     45298 I
e proCoq1.NW_012149775v1     113096 339 -   1411461 I
e canFam3.chr35            26302056 338 +  26524999 I
e otoGar3.GL873550           260973 280 +  18854210 I

a score=28216.000000
s hg38.chr6_GL000254v2_alt  1432406 5 +   4827813 catga
s panTro5.chr6             30301747 5 + 175400573 catga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536128 5 + 173848474 catga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243242 5 +   2037526 catga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910545 5 + 122973662 catga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789603 5 + 172585720 catgc
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             30079126 5 - 170955103 catgc
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     328437 5 +   1495729 catgc
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     426293 5 -    863181 catgc
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29578348 5 -  71996105 catgc
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1     267557 5 -    735854 catgc
i manLeu1.NW_012107142v1   C 0 I 1
s colAng1.NW_012115577v1     216440 5 -   1829203 catgc
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30389117 5 + 171630274 cgcac
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           213124 5 +    515838 cgcac
i saiBol1.JH378341         C 0 I 1
s aotNan1.NW_018496904v1     330427 5 -    383796 cacac
i aotNan1.NW_018496904v1   C 0 I 1
s mm10.chr17               58051693 5 -  94987271 GATGA
i mm10.chr17               C 0 C 0
e micMur3.chr6               308571 345 + 123392446 I
e dasNov3.JH580105             9144 854 -     45298 I
e proCoq1.NW_012149775v1     113096 339 -   1411461 I
e canFam3.chr35            26302056 338 +  26524999 I
e otoGar3.GL873550           260973 280 +  18854210 I
e cebCap1.NW_016107755v1     844684 6 -   1771730 I

a score=267500.000000
s hg38.chr6_GL000254v2_alt  1432411 27 +   4827813 ------------tgtagtcacagctac-----------------ttaggaggctga
s panTro5.chr6             30301752 27 + 175400573 ------------tgtagtcccagctac-----------------ttaggaggctga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536133 27 + 173848474 ------------tgtagtcccagctac-----------------ttaggaggctga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243247 27 +   2037526 ------------tgtagtcccagctac-----------------ttaggaggctga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910550 27 + 122973662 ------------tgtagtcccagctac-----------------tcaggaggctga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789609 27 + 172585720 ------------tgtagtctcagctac-----------------tcaggaggctga
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30079132 27 - 170955103 ------------tgtagtctcagctac-----------------tcaggaggctga
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     328443 27 +   1495729 ------------tgtagtctcagctac-----------------tcaggaggctga
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     426299 27 -    863181 ------------tgtagtctcagctac-----------------tcaggaggctga
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29578354 27 -  71996105 ------------tgtagtctcagctac-----------------tcaggaggctga
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1     267563 27 -    735854 ------------tgtagtctcagctac-----------------tcaggaggctga
i manLeu1.NW_012107142v1   I 1 C 0
s colAng1.NW_012115577v1     216446 27 -   1829203 ------------tgtagtctcagctac-----------------tcaggaggctga
i colAng1.NW_012115577v1   I 1 C 0
s calJac3.chr4             30389123 27 + 171630274 ------------tgtagttccagctac-----------------tcgagaggctga
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           213130 27 +    515838 ------------tgtagttccagctac-----------------tcaagaggctta
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     844690 27 -   1771730 ------------tgtagtcccagctac-----------------tcgagaggctga
i cebCap1.NW_016107755v1   I 6 C 0
s aotNan1.NW_018496904v1     330433 27 -    383796 ------------tgtagtcccagctac-----------------tcgagaggctga
i aotNan1.NW_018496904v1   I 1 C 0
s mm10.chr17               58051698 56 -  94987271 GGTGAAGTACACAGTGATGTGAGCtatatcagatcaggttcagggtaggaagcaga
i mm10.chr17               C 0 C 0
e micMur3.chr6               308571 345 + 123392446 I
e dasNov3.JH580105             9144 854 -     45298 I
e proCoq1.NW_012149775v1     113096 339 -   1411461 I
e canFam3.chr35            26302056 338 +  26524999 I
e otoGar3.GL873550           260973 280 +  18854210 I

a score=370625.000000
s hg38.chr6_GL000254v2_alt  1432438 37 +   4827813 ggc----------------aggag-aattgcttgaactca-g-------gaggcagaggt------tg--
s panTro5.chr6             30301779 37 + 175400573 ggc----------------aggag-aattgcttgaactca-g-------gaggcagaggt------tg--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536160 37 + 173848474 ggc----------------aggag-aattgcttgaactca-g-------gaggcagaggt------tg--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243274 37 +   2037526 ggc----------------aggag-aattgcttgaactca-g-------gaggcagaggt------tg--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910577 37 + 122973662 ggc----------------gggag-aattgcttgaactca-g-------gaggcagaggt------tg--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789636 37 + 172585720 ggc----------------aggag-aattgcttgaaccca-g-------gaggtagaggt------tg--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079159 37 - 170955103 ggc----------------aggag-aattgcttgaaccca-g-------gaggtagaggt------tg--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328470 37 +   1495729 ggc----------------aggag-aattgcttgaaccca-g-------gaggtagaggt------tg--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426326 37 -    863181 ggc----------------aggag-aattgcttgaaccca-g-------gaggtagaggt------tg--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578381 37 -  71996105 ggc----------------aggag-aattgcttgaaccca-g-------gaggtagaggt------tg--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267590 37 -    735854 ggc----------------aggag-aattgcttgaaccca-g-------gaggtagaggt------tg--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216473 37 -   1829203 ggc----------------aggag-aattgcttgaaccca-g-------gaggtggaggt------tg--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389150 37 + 171630274 ggc----------------aggag-aatcacttgaacctg-g-------gaggtggaggt------tg--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213157 37 +    515838 ggc----------------aggag-aatcacttgaacctg-g-------gaggtggaggt------tg--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     844717 37 -   1771730 ggc----------------aggag-aatcacttgaaccta-g-------gaggtagaggt------tg--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     330460 37 -    383796 agc----------------aggag-aatcacttgaacctg-g-------gaggtggaggt------tg--
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58051754 54 -  94987271 agcccagtgggcattctaaagagc-aagagatttaactcagg-------gaagtagatga------tg--
i mm10.chr17               C 0 I 283
s canFam3.chr35            26302394 53 +  26524999 GGA----------------AGGAGCAAATACTGAAGTCCA-GGCATGCTGATGCCGAGGTATGACATGGA
i canFam3.chr35            I 338 C 0
e micMur3.chr6               308571 345 + 123392446 I
e dasNov3.JH580105             9144 854 -     45298 I
e proCoq1.NW_012149775v1     113096 339 -   1411461 I
e otoGar3.GL873550           260973 280 +  18854210 I

a score=50000.000000
s hg38.chr6_GL000254v2_alt  1432475 4 +   4827813 cagt
s panTro5.chr6             30301816 4 + 175400573 cagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536197 4 + 173848474 cagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243311 4 +   2037526 cagt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910614 4 + 122973662 cagt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789673 4 + 172585720 cagt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079196 4 - 170955103 cagt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328507 4 +   1495729 cagt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426363 4 -    863181 cagt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578418 4 -  71996105 cagt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267627 4 -    735854 cagt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216510 4 -   1829203 cagt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389187 4 + 171630274 cagt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213194 4 +    515838 cagt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     844754 4 -   1771730 cagt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     330497 4 -    383796 cagt
i aotNan1.NW_018496904v1   C 0 C 0
s canFam3.chr35            26302447 4 +  26524999 CAGC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               308571 345 + 123392446 I
e mm10.chr17               58051808 283 -  94987271 I
e dasNov3.JH580105             9144 854 -     45298 I
e proCoq1.NW_012149775v1     113096 339 -   1411461 I
e otoGar3.GL873550           260973 280 +  18854210 I

a score=270446.000000
s hg38.chr6_GL000254v2_alt  1432479 31 +   4827813 ----gag-caa-gatcactccactgca-ctccagcctg
s panTro5.chr6             30301820 31 + 175400573 ----gag-caa-gatcactccactgca-ctccagcctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536201 31 + 173848474 ----gag-caa-gatcactccactgca-ctccagcctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243315 31 +   2037526 ----gag-caa-gatcactccactgca-ctccagcctg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910618 32 + 122973662 ----gagccaa-gatcgcaccactgca-ctccagcctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789677 32 + 172585720 ----gagccaa-gatcgtaccactgca-ctccaacctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079200 32 - 170955103 ----gagccaa-gattgtaccactgca-ctccaacctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328511 32 +   1495729 ----gagccaa-gattgtaccactgca-ctccaacctg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426367 32 -    863181 ----gagccaa-gatcgtaccactgca-ctccaacctg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578422 32 -  71996105 ----gagccaa-gatcgtaccactgca-ctccaacctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267631 32 -    735854 ----gagtcaa-gatcgtaccactgca-ctctaacctg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216514 32 -   1829203 ----gagccaa-gatcgtgccactgcc-ctccaacctg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389191 32 + 171630274 ----gatccaa-tatcatgccactgca-ctccagcttg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213198 32 +    515838 ----gagccag-tatcatgccactgca-ctccagcctg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     844758 32 -   1771730 ----gagccaa-tatcatgccactgca-ctccagcctg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     330501 32 -    383796 ----gagccaa-tatcatgccactgca-ctccagccta
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           261253 29 +  18854210 ----gag-taa-gacgctagccccata-tgccaga--g
i otoGar3.GL873550         I 280 C 0
s canFam3.chr35            26302451 38 +  26524999 GAGGGAGACACTGAATGACCCCCTGCATCTCCACACTG
i canFam3.chr35            C 0 I 127
e micMur3.chr6               308571 345 + 123392446 I
e mm10.chr17               58051808 283 -  94987271 I
e dasNov3.JH580105             9144 854 -     45298 I
e proCoq1.NW_012149775v1     113096 339 -   1411461 I

a score=201948.000000
s hg38.chr6_GL000254v2_alt  1432510 26 +   4827813 gcgacagagcgagactccgtctcaaa
s panTro5.chr6             30301851 26 + 175400573 gcgacagagcgagactccgtctcaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536232 22 + 173848474 gcgacagagcgagactccgtct----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243346 22 +   2037526 gcgacagagcgagactccgtct----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910650 26 + 122973662 gcgatagagcgagactccatctcaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789709 26 + 172585720 gcgacagagcgagactccatctcatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079232 26 - 170955103 gcgacagagcgagactccatctcatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328543 26 +   1495729 gcgacagagcgagactccatctcatt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426399 26 -    863181 gcaacagagtgagactccatctcatt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578454 26 -  71996105 gtgacagagcgagactccatctcatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267663 26 -    735854 gcgacagagcgagactccatctcatt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216546 26 -   1829203 gcgacagagcgagactccttctcata
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389223 26 + 171630274 gcgacagagagagaccctgtctcaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213230 26 +    515838 gtgaaagagagagatcctgtctcaaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     844790 26 -   1771730 gcgacagagagagaccctgtctcaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     330533 26 -    383796 gcaacagagagagaacctgtctcaaa
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           261282 26 +  18854210 ctggcaggttcaaacccagccccggc
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               308571 345 + 123392446 I
e mm10.chr17               58051808 283 -  94987271 I
e dasNov3.JH580105             9144 854 -     45298 I
e proCoq1.NW_012149775v1     113096 339 -   1411461 I
e canFam3.chr35            26302489 127 +  26524999 I

a score=61646.000000
s hg38.chr6_GL000254v2_alt  1432536 31 +   4827813 aaaaaa---aaaaaaaaaaaaaaaa--------aaaaaaaaa
s panTro5.chr6             30301877 31 + 175400573 aaaaaa---aaaaaaaaaaaaaaaa--------aaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536254 18 + 173848474 ----------------acaaaaaaa--------aaaaaaaaG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243368 18 +   2037526 ----------------caaaaaaaa--------aaaaaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910676 31 + 122973662 aaaaaa---aaaaagaaaaagaaaa--------agaaaaaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789735 17 + 172585720 t-----------------aaaaaaa--------aaaaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079258 17 - 170955103 t-----------------aaaaaaa--------aaaaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328569 18 +   1495729 t----------------aaaaaaaa--------aaaaaaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426425 18 -    863181 t----------------gaaaaaaa--------aaaaaaaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578480 23 -  71996105 taaaa-----------aaaaaaaaa--------aaaaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267689 16 -    735854 t------------------aaaaaa--------aaaaaaaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216572 17 -   1829203 a-----------------aaaaaaa--------aaaacaaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389249 21 + 171630274 aaa-------------aagaagaaa--------gaaaagaag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213256 25 +    515838 aaag---------aagaagaagaaa--------gaaaagaag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     844816 25 -   1771730 aaga---------aagaagaagaaa--------gaaaagaag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     330559 24 -    383796 aaa----------aagaagaagaaa--------gaaaagaag
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           261308 34 +  18854210 caaaaactgcaaaaaaaGAAAAAGG--------AAAAAGAAA
i otoGar3.GL873550         C 0 I 25
s dasNov3.JH580105             9998 35 -     45298 -------agagaaattaaaaaaaaataaatcttaaaaaaAAA
i dasNov3.JH580105         I 854 I 16
e micMur3.chr6               308571 345 + 123392446 I
e mm10.chr17               58051808 283 -  94987271 I
e proCoq1.NW_012149775v1     113096 339 -   1411461 I
e canFam3.chr35            26302489 127 +  26524999 I

a score=310509.000000
s hg38.chr6_GL000254v2_alt  1432567 29 +   4827813 a--a------------------------------------------GTCAGGATGTCCTAACTGGTTTATTGG
s panTro5.chr6             30301908 71 + 175400573 a--aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGTCAGGATGTCCTAACTGGTTTATTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536272 27 + 173848474 T--A--------------------------------------------CAGGATGTCCTAACTGGTTTATTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243386 29 +   2037526 a--a------------------------------------------GTCAGGATGTCCTAACTGGTTTATTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910707 32 + 122973662 a--a---------------------------------------aaAGTCAGGATGTCCTAACTGGATTCTTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789752 29 + 172585720 a--a------------------------------------------GTCAGGATGTCCTAACTGGATTCTTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079275 29 - 170955103 a--a------------------------------------------GTCAGGATGTCCTAACTGGATTCTTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328587 29 +   1495729 a--a------------------------------------------GTCAGGATGTCCTAACTGCATTCTTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426443 29 -    863181 a--G------------------------------------------GTCAGGATGTCCTAACTGGATTCTTGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578503 29 -  71996105 a--a------------------------------------------GTCAAGATGTCCTAACTGGATTCTTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267705 29 -    735854 a--a------------------------------------------GTCAGGATGTCCTAACTGGATTCTTGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216589 31 -   1829203 aCCA------------------------------------------GTCAGGATGTCCTAACTGGATTCTTGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389270 29 + 171630274 a--a------------------------------------------gtccggacatcctaactggactcttgg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213281 29 +    515838 a--a------------------------------------------GTCAGGACGTCCTAACTGGACTCTTGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     844841 29 -   1771730 a--a------------------------------------------gtcaagaagtcctaactggactcttgg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     330583 29 -    383796 a--a------------------------------------------gtcaggacatcctaactggactcttgg
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               308916 29 + 123392446 a--a------------------------------------------gtcaggAGGTCCTAACTGGACTCTTGG
i micMur3.chr6             I 345 C 0
s proCoq1.NW_012149775v1     113435 29 -   1411461 A--A------------------------------------------GTCAAGAGGTCCTAACTGGACTCTTGG
i proCoq1.NW_012149775v1   I 339 C 0
s otoGar3.GL873550           261367 28 +  18854210 A--A------------------------------------------ACCAGGAGGTCCTAACTGGGTTCTT-G
i otoGar3.GL873550         I 25 C 0
s dasNov3.JH580105            10049 21 -     45298 A--G------------------------------------------GACTGGACGTCAGCCGTGG--------
i dasNov3.JH580105         I 16 C 0
e mm10.chr17               58051808 283 -  94987271 I
e canFam3.chr35            26302489 127 +  26524999 I

a score=608499.000000
s hg38.chr6_GL000254v2_alt  1432596 41 +   4827813 CTTCAAGGTCAATCACCATAGGTCAGTAGTGCTGCAGCTAC
s panTro5.chr6             30301979 41 + 175400573 CTTCAAGGTCAATCACCATAGGTCAGTAGTGCTGCAGCTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536299 41 + 173848474 CTTCAAGGTCAATCACCATAGGTCAGTAGTGCTGCAGCTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243415 41 +   2037526 CTTCAAGGTCAATCACCATAGGTCAGTAGTGCTGCAGCTAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910739 41 + 122973662 CTTCAAGGTCAATCACCATAGGTCAGTAGTGCTGCAGCTAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789781 41 + 172585720 CTTCAAGGTCAATCACCATAGGTCGGTAGTGCTGCAGCTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079304 41 - 170955103 CTTCAAGGTCAATCACCATAGGTCGGTAGTGCTGCAGCTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328616 41 +   1495729 CTTCAAGGTCAATCACCATAGGTCGGTAGTGCTGCAACTAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426472 41 -    863181 CTTCAAGGTCAATCACCATAGGTCGGTAGTGCTGCAGCTAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578532 41 -  71996105 CTTCAAGGTCAATCACCATAGGTCGGTAGTGCTGCAGCTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267734 41 -    735854 CTTCAAGGTCAATCACCATAGGTCGGTAGTGCTGCAGCTAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216620 41 -   1829203 CTTCAAGGTCAATCACCATAGGTCAGTAGTGCTGCAGCTAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389299 41 + 171630274 cttcaaggtcaatcaccataggtcagtaatgctgcagctac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213310 37 +    515838 CTTCAAGGTCAATCACCATAGGTCAGTAATGCTG----GGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     844870 41 -   1771730 cttcaaggtcaatcaccataggtcagtaatgctgcggctac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     330612 41 -    383796 cttcaaggtcaatcaccatagatcagtaatgctgcagctac
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               308945 41 + 123392446 CTTCAAAGTCAATCACCATAGGTCAGAAATGCTGCAGCTAC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     113464 41 -   1411461 CTTCAAAGTCAATCACCATAGGTCAGAAATGCTGCAGCTAC
i proCoq1.NW_012149775v1   C 0 I 101
s otoGar3.GL873550           261395 18 +  18854210 CTTCAAAGTCAATCAC-----------------------AC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58052091 39 -  94987271 CTTCATGATCAATCCCCATCAGTCAGAATT--TGCAGGTAC
i mm10.chr17               I 283 C 0
s dasNov3.JH580105            10070 39 -     45298 CTTCAGGGTTTGTC-CTGTAGGTCAGCAATGCTGCAGC-AC
i dasNov3.JH580105         C 0 C 0
e canFam3.chr35            26302489 127 +  26524999 I

a score=147701.000000
s hg38.chr6_GL000254v2_alt  1432637 15 +   4827813 TGCTAGCATAGCAGC
s panTro5.chr6             30302020 15 + 175400573 TGCTAGCATAGCAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536340 15 + 173848474 TGCTAGCATAGCAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243456 15 +   2037526 TGCTAGCATAGCAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910780 15 + 122973662 TGCTAGCATAGCGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789822 15 + 172585720 TGCTAGCATAGCGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079345 15 - 170955103 TGCTAGCATAGCGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328657 15 +   1495729 TGCTAGCATAGCGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426513 15 -    863181 TGCTAGCATAGCGTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578573 15 -  71996105 TGCTAGCATAGCGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267775 15 -    735854 TGCTAGCATAGCGTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216661 15 -   1829203 TGCTAGCATAGCGGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389340 15 + 171630274 tgatggcatagcagc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213347 15 +    515838 CGCTGGCATAGCGGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     844911 15 -   1771730 tgctggcatagcggc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     330653 15 -    383796 tgctggcatggcacc
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               308986 15 + 123392446 TCCCAGTGTAGTGAC
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           261413  6 +  18854210 TTTGAG---------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58052130 13 -  94987271 TTCTAGCACAGCA--
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            10109 15 -     45298 CCCTCGCACGGCAGC
i dasNov3.JH580105         C 0 C 0
e proCoq1.NW_012149775v1     113505 101 -   1411461 I
e canFam3.chr35            26302489 127 +  26524999 I

a score=561321.000000
s hg38.chr6_GL000254v2_alt  1432652 58 +   4827813 CACGGGCCCAGCTGCCCTA-CCCCCATGCACATTTCATGTTTATTGGGGCTCATCCATG
s panTro5.chr6             30302035 58 + 175400573 CACGGGCCCAGCTGCCCTA-CCCCTATGCACATTTCATGTTTATTGGGGCTCATCCATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536355 58 + 173848474 CACGGGCCCAGCTGCCCTA-CCCCTATGCACATTTCATGTTTATTGGGGCTCATCCATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243471 58 +   2037526 CACGGGCCCAGCTGCCCTA-CCCCCATGCACATTTCATGTTTATTGGGGCTCATCCATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910795 58 + 122973662 CACGGGCCCAGCTGCCCTA-CCCCCATGCACATTTCATGTTTATTGGGGCTCATCCATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789837 58 + 172585720 CACTGGCCCAGCTGCCCTA-CCGCCATGGACATTTCATGTTTATTGGGGCTCATCCATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079360 58 - 170955103 CACTGGCCCAGCTGCCCTA-CCGCCATGGACATTTCATGTTTATTGGGGCTCATCCATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328672 58 +   1495729 CACTGGCCCAGCTGCCCTA-CCGCCATGGACATTTCATGTTTATTGGGGCTCATCCATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426528 58 -    863181 CACCGGCCCAGCTGCCCTA-CCGCTGTGGACATTTCATGTTTATTGGGGCTCATCCATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578588 58 -  71996105 CACTGGCCCAGCTGCCCTA-CCGCCATGGACATTTCATGTTTATTGGGGCTCACCCATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267790 58 -    735854 CACTGGCCCAGCTGCCCTA-CCGCCATGGACATTTCATGTTTATTGGGGCTCATCCATG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216676 58 -   1829203 CACTGGCCCAGCTGCCCTA-CCCCCAGGGACATTTCATGTTAATTGGGGCTCATCCATG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389355 52 + 171630274 cactggcccagctgcccga-------tgcacatctcatatctattggggctcatccacg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213362 52 +    515838 CACTAGCCCAGCTGCCCAA-------TGCACATCTCATATCTACTGGGGCTCATCCACG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     844926 52 -   1771730 cactggcccagctgcccga-------tgcacatctcatgtctattggagctcatccaca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     330668 52 -    383796 caatggcccagctgcctga-------tgcacatctcatatctattggggctcatccacg
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               309001 58 + 123392446 CACAGCCCCAATTGTCCTA-CCCCCACAGACCTCTCCAGTCCACTGGGCCTTTTTCATC
i micMur3.chr6             C 0 I 32
s otoGar3.GL873550           261419 39 +  18854210 --------------------CCCCCAAGAACCTCACAACTCTATTGGGGCTTTtctacc
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               58052143 54 -  94987271 CAGTGTTCCC-CTGCCCTG-CTACCA---ACCTCTCATGTCTACTGGGACTTGTCCATC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26302616 55 +  26524999 CAGAGCCGATGCTACTCTCTCCTCCTCGGAC--CCCGTCCTTGTCGGG-CTCAGCTAG-
i canFam3.chr35            I 127 C 0
s dasNov3.JH580105            10124 52 -     45298 --CTGCCC---CCACCTGT-CCCCCATGGTCACCTCTTGCCCCTGGGGGCCTGTCACC-
i dasNov3.JH580105         C 0 C 0
e proCoq1.NW_012149775v1     113505 101 -   1411461 I

a score=282854.000000
s hg38.chr6_GL000254v2_alt  1432710 26 +   4827813 CTC---TTCTATaggaaaatagcctctac
s panTro5.chr6             30302093 26 + 175400573 CTC---TTCTATaggaaaatagcctctac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536413 26 + 173848474 CTC---TTCTATaggaaaatagcctctac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243529 26 +   2037526 CTC---TTCTAcaggaaaatagcctctac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910853 26 + 122973662 CTC---TTCTATaggaaaatagcctctac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789895 26 + 172585720 CTC---TTCTATCggaaaataggctctac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079418 26 - 170955103 CTC---TTCTATCggaaaataggctctac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328730 26 +   1495729 CTC---TTCTATCggaaaataggctctac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426586 26 -    863181 CTC---TTCTATaggaaaataggctctac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578646 26 -  71996105 CTC---TTCTATaggaaaataggctctac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267848 26 -    735854 CTC---TTCTATaggaaaataggctctac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216734 26 -   1829203 CTC---TTCTATaggaaaatagcctctac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389407 26 + 171630274 ctc---ttctgtaggaaaatggcctctac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213414 26 +    515838 CTC---TTCTgtaggaaaatggcctccac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     844978 26 -   1771730 ctc---ttctgcaggaaaatggccaccag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     330720 26 -    383796 ctc---ttctgtaggaaaatggcctctac
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           261460 26 +  18854210 ctc---ttctattagaaaatggcctccat
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               58052197 26 -  94987271 TTT---CTCTGAAAGACAATGACCTCTTC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26302671 28 +  26524999 CTCATGTGCTATaggaagttggcctccc-
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            10176  7 -     45298 ----------------------cctctgc
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               309059 32 + 123392446 I
e proCoq1.NW_012149775v1     113505 101 -   1411461 I

a score=77626.000000
s hg38.chr6_GL000254v2_alt  1432736 5 +   4827813 ctcac
s panTro5.chr6             30302119 5 + 175400573 ctcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536439 5 + 173848474 ctcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243555 5 +   2037526 ctcac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910879 5 + 122973662 ctcac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789921 5 + 172585720 ctcat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079444 5 - 170955103 ctcat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328756 5 +   1495729 ctcat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426612 5 -    863181 ctcat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578672 5 -  71996105 ctcat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267874 5 -    735854 ctcat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216760 5 -   1829203 ctcac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389433 5 + 171630274 ctcac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213440 5 +    515838 ctcac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     845004 5 -   1771730 ctcac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     330746 5 -    383796 ctcac
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     113606 5 -   1411461 ctcac
i proCoq1.NW_012149775v1   I 101 C 0
s otoGar3.GL873550           261486 5 +  18854210 ctcac
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58052223 5 -  94987271 TGTAC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26302699 5 +  26524999 ctcac
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            10183 5 -     45298 cccac
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               309059 32 + 123392446 I

a score=1695278.000000
s hg38.chr6_GL000254v2_alt  1432741 125 +   4827813 ttctgcatttcaaatctcatagaaatacatttagttggaaggac-ttaattcatgtccag-aatcctagctccaaa-aa--ttctgagaaatagagttttttac--ttttcaatctcttcaatagaaaggAA-
s panTro5.chr6             30302124 125 + 175400573 ttctgcatttcaaatctcatagaaatacatttagttggaaggac-ttaattcatgtccag-aatcctagctccaaa-aa--ttctgagaaatagagttttttac--ttttcaatctcttcaatagaaaggAA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536444 125 + 173848474 ttctgcatttcaaatctcatagaaatacatttagttggaaggac-ttaattcatgtccag-aatcctagctccaaa-aa--ttctgagaaatagagttttttac--ttttcaatctcttcaatagaaaggAA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243560 125 +   2037526 ttctgcatttcaaatctcatagaaatacatttagttggaaggac-ttaattcatgtccag-aatcctagctccaaa-aa--ttctgagaaatagagttttttac--ttttcaatctcttcaatagaaaggAA-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74910884 127 + 122973662 ttctgcatttcaaatctcgtacaaatacatttagttagaaggac-ttaattcatgtccag-aatcctagttccaaa-aa--ttctgagaaatagagttttttactatattcaatctcttcaatagaaaggAA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30789926 125 + 172585720 ttctgcatttcaaatctcatacaaatacatttagttggaaggac-ttaattcatgtccag-aatcctcgctccaaa-ga--ctctgagaaatagagttttttac--ttttcaatctcttcaatagaaaggAA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079449 125 - 170955103 ttctgcatttcaaatctcatacaaatacatttagttggaaggac-ttaattcatgtccag-aatcctagctccaaa-ga--ctctgagaaatagagttttttac--ttttcaatctcttcaatagaaaggAA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328761 125 +   1495729 ttctgcatttcaaatctcatacaaatacatttagttggaaggac-ttaattcatgtccag-aatcctagctccaaa-ga--ctctgagaaatagagttttttac--ttttcaatctcttcaatagaaaggAA-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426617 123 -    863181 ttctgcatttcaaatctcatacaaatacatttagttggaaggac-ttaattcatgtccag-aatcctagctccaaa-ga--ctctgagaaat--agttttttac--ttttcaatctcttcaatagaaaggAA-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578677 123 -  71996105 ttctgcatttcaaatctcatacaaatacatttagttggaaggac-ttaattaatgtccag-aatcctagctccaaa-ga--ctctgagaaat--agttttttac--ttttcaatctgttcaatagaaaggAA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     267879 125 -    735854 ttctgcatttcaaatctcatacaaatacatttagttggaaggac-ttaattcatgtccag-aatcctagctccaaa-ga--ctctgagaaatagagttttttac--ttttcaatctcttcaatagaaaggAA-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216765 122 -   1829203 ttctgcatttcaaatctcatacaaatacatttagttggaaggac-ttaattcatgtccag-aatcctagctccaaa-aa--ctctga-aaat--agttttttac--ttttcaatctcttcaatagaaaggAA-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389438 124 + 171630274 ttttgcctttcaaatctcatacacttacgtttagttggaaggac-ttaattcatgtccag-aatcctagctccaaa-ga--ttctgaaaaatagag-ttttaac--tttccaatcccttcaatagaagggaa-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213445 122 +    515838 ttttgcctttcaaatcttatacacatacgtttagttggaaggac-ttaattcatgtccag--atcctagctccaaa-aa--ttctgaaaaatagag-tttttac--ttttcagtctcttcaacag-agggaA-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     845009 124 -   1771730 ttttgcctttcaaatctcatacacatacgtttaattggaaggac-ttaattcatgtccag-aatcctagctccaaa-aa--ttctgaaaaatagag-tttttac--ttttcaatctcttcaacagaagggaa-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     330751 124 -    383796 ttttgcctttcaaatctcatacacatacgtttagtaggaaggac-ttaattcatgtccgg-aatcctagctgcaaa-aa--ttctgaaaaatcgag-tttttac--ttttcagtcccttcaacagaagggaa-
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               309091 123 + 123392446 ttctgctttttaaatcgcataaaaacacatctaattggaaggac-ttaattcaaatccag-agccttagctgca---aa--ttatgaaaaatggagttttttac--tttccagtctctccgatagaaggGGA-
i micMur3.chr6             I 32 C 0
s proCoq1.NW_012149775v1     113611 126 -   1411461 ttctgcttttgaaatctcataaaaacacatctatttggaaggac-ttaattcacacccag-agccctagctgcaaagaa--ttatgagaaatggagctttttac--tttccaatctctccaatagaaggGGA-
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           261491 125 +  18854210 ttctgattttcaaatctcataaagacacgtctaactggaaggac-tcaattcatgtccag-agccctagctgcaaagaa--ttctgagaaatggaggttttt-c--tttccagtctctataatagaaggggg-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58052228 111 -  94987271 TTCTGCTTTTCAAA-CTCATACAAGTTCATCTATTTGGGGTAACTTTAATTTACACCTAGGAGTTCAAGCCTCAGA-GAACTTCTGAGCAGTAAAGTGTTAAAA-------------------AAAAAAGAG-
i mm10.chr17               C 0 I 86
s canFam3.chr35            26302704  86 +  26524999 ttctgcctctcgaatcccacatacacacatttaactggcagaac-ctga-----GCCGAG-A---------------AG--TTCAG-------------TTTAC--TTCTCCA-------AACATAAGGGGA-
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            10188 124 -     45298 -tcttcctttgaggtcc--tacacatgcatctacctggcaggcc-cgagttcacacccag-aaccccagctgctaggaa--ttccggggcgtggagcctttcac--ctcccaacctctccaagtggaaggAGA
i dasNov3.JH580105         C 0 C 0

a score=885792.000000
s hg38.chr6_GL000254v2_alt  1432866 65 +   4827813 ATGAGGTCATTCCATATATGtaggttt-ggcagataaaatgcagaacatccagttaaatttgaatt
s panTro5.chr6             30302249 65 + 175400573 ATGAGGTCATTCCATATATGtagggtt-ggcagataaaatgcagaacatccagttaaatttgaatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536569 65 + 173848474 ATGAGGTCATTCCATATATGtagggtt-ggcagataaaatgcagaacatccagttaaatttgaatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243685 65 +   2037526 ATGAGGTCATTCCATATATGtagggtt-ggcagataaaatgcagaacatccagttaaatttgaatt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74911011 65 + 122973662 ATGAGGTCATTCCACATATGtagggtt-ggcagataaaatgcagaacatccagttaaatttgaatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30790051 65 + 172585720 GTGAGGTCAATCCACATATAtagggtt-ggcagataaaatgcagaatatccagttaaatttgaatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079574 65 - 170955103 GTGAGGTCAATCCACACATGtagggtt-ggcagataaaatgcagaacatccaattaaatttgaatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328886 65 +   1495729 GTGAGGTCAATCCACATATGtagggtt-ggcagataaaatgcagaacatccagttaaatttgaatt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426740 65 -    863181 GTGAGGTCAATCCACACATGtagggtt-ggaagataaaatgcagaacatccagttaaatttgaatt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578800 65 -  71996105 ATGAGGTCAATCCACACATGtagggtt-ggcagacaaaatgcagaacatccagttaaatttgaatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     268004 65 -    735854 GTGAGGTCAATCCACACATGtaggatt-ggcagataaaatgcagaacatccagttaaatttgaatt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216887 65 -   1829203 GTGAGGTCAATCCACATATGtaggttt-ggcagataaaatgcagaacatccagttaaatttgaatt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389562 65 + 171630274 aTGAAGTCAATCCACATATGtagggtt-ggcagataaaatacagaacatccagttaaatttgaatg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213567 65 +    515838 ATGAAGTCAATCTACATATGtagggtt-ggcagataaaatacagaacatccagttaaagttgaatt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     845133 45 -   1771730 aTGAAGTCAATCCACACATGTTGGGTT-G--------------------ccagttaaatttgaatt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     330875 65 -    383796 aTGCAGTCAATCCACATAGGtagggtt-ggcagataaaatacagaacatccagttaaatttgaatt
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               309214 65 + 123392446 ATAAAGTCAATCCACACATCtagagtt-ggcagataaaatataggatatccaattacatttaaatt
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     113737 65 -   1411461 ATAAAGTCAATCCATATACCtagagtt-gccagataaaatataggatatccagttaaatttaaatt
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           261616 66 +  18854210 aAAAAGTCAATACACATATCtagggttagccagataaaatacaggatgtccagttaagtttgaatt
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26302790 65 +  26524999 ATGAAGTCAACCCGTATGTCtacagct-gccagataaaatacaggacatccagttaaacatgaatt
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            10312 36 -     45298 AAGCAGTCCATCTGTGTATCTAGGGTC-GCCAGATAA-----------------------------
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58052339 86 -  94987271 I

a score=855363.000000
s hg38.chr6_GL000254v2_alt  1432931 63 +   4827813 tcagataaacaatga-tttttt--agtataagtatctcccaaatactgcat-ggggcatacttacac
s panTro5.chr6             30302314 63 + 175400573 tcagataaacaatga-tttttt--agtataagtatctcccaaatactgcat-ggggcatacttacac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536634 63 + 173848474 tcagataaacaatga-tttttt--agtataagtatctcccaaatactgcat-ggggcatacttacac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243750 61 +   2037526 tcagataaacaatga--ttttt--agtataagtatct-ccaaatactgcat-ggggcatgcttacac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74911076 63 + 122973662 ttagataaacaatga-tttttt--agtataagtatctcccaaatactgcat-ggggcatacttacac
i nomLeu3.chr1a            C 0 I 2
s rheMac8.chr4             30790116 63 + 172585720 tcagataaacaatga-tttttt--agtataaatatctcccaaatactgtat-ggggcatacttacac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079639 63 - 170955103 tcagataaacaatga-tttttt--agtataaatatctcccaaatactgtat-ggggcatacttacac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     328951 63 +   1495729 tcagataaacaatga-tttttt--agtataaatatctcccaaatgctgtat-ggggcatacttacac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426805 63 -    863181 tcagataaacaatga-tttttt--agtataaatatctcccaaatactgtat-ggggcatacttacac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578865 63 -  71996105 tcagataaacaatga-tttttt--agtataaatatctcccaaatactgtat-ggggcatacttacac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     268069 63 -    735854 tcagataaacaatga-tttttt--agtataaatatctcccaaatactgtat-ggggcatacttacac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     216952 64 -   1829203 tcagataaacaatgattttttt--agtataaatatctcccaaatactgtat-ggggcatacttacac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389627 63 + 171630274 tcagataaacaatga-gttttt--aatataaatatctcccaaatattgtat-ggggcatacttatac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213632 63 +    515838 tcagataaacaatga-gttttt--gatataaatatctcccaaatattgtat-ggggcatacttgtac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     845178 60 -   1771730 tcagataaacaatga-gttttt--aatataaatatctcccacatattgtat-ggggca---ttatac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     330940 63 -    383796 tcagataaacaatga-gttttt--aatataaacatctccgaaatattgtat-ggggcatagttgtac
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               309279 65 + 123392446 tcagataagcaataa-ctttttaaaatataagtatttcccaaatattgtat-ggggcatacttatac
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     113802 65 -   1411461 tcagataagcaataa-atttttaaaatataaatatctcccaaatattgtat-ggggcatacttatac
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           261682 65 +  18854210 tcagttaaacaaaga-atttttaaaatgtaagtatctcccaaatattgtat-agggcatacttatac
i otoGar3.GL873550         C 0 I 6
s mm10.chr17               58052425 60 -  94987271 TTAGTTGAAGAA--A-TTAGAA--agtacaagtactctagaaatattatct-ggaacata-ttaaac
i mm10.chr17               I 86 C 0
s canFam3.chr35            26302855 57 +  26524999 tcagataaaaaatga---------a-tagaaatatctcccaaatattatataggggaatacttgcac
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            10348 15 -     45298 ----------------------------------------------------gagagatgcctgcac
i dasNov3.JH580105         C 0 I 2

a score=46298.000000
s hg38.chr6_GL000254v2_alt  1432994 4 +   4827813 aaaa
s panTro5.chr6             30302377 4 + 175400573 aaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536697 4 + 173848474 aaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243811 4 +   2037526 aaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30790179 4 + 172585720 aaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079702 4 - 170955103 aaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     329014 4 +   1495729 aaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426868 4 -    863181 aaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578928 4 -  71996105 aaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     268132 4 -    735854 aaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     217016 4 -   1829203 aaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389690 4 + 171630274 taaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213695 4 +    515838 taaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     845238 4 -   1771730 taaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     331003 4 -    383796 taaa
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               309344 4 + 123392446 taaa
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     113867 4 -   1411461 taaa
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           261753 4 +  18854210 taaa
i otoGar3.GL873550         I 6 C 0
s canFam3.chr35            26302912 4 +  26524999 taaa
i canFam3.chr35            C 0 I 172
s dasNov3.JH580105            10365 4 -     45298 aaaa
i dasNov3.JH580105         I 2 C 0
e mm10.chr17               58052485 0 -  94987271 C
e nomLeu3.chr1a            74911139 2 + 122973662 I

a score=544113.000000
s hg38.chr6_GL000254v2_alt  1432998 39 +   4827813 tacttgttta--------------------------ttatttatctaaaattcagatttaaatgg
s panTro5.chr6             30302381 39 + 175400573 taattgttta--------------------------ttatttatctaaaatccagatttaaatgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536701 39 + 173848474 taattgttta--------------------------ttatttatctaaaatccagatttaaatgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243815 39 +   2037526 taattgttta--------------------------ttatttatctaaaattcagatttaaatgg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30790183 39 + 172585720 taattgttta--------------------------ttatttatctgaaattcagatttaaatgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079706 39 - 170955103 taattgttta--------------------------ttatttatctgaaattcagatttaaatgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     329018 39 +   1495729 taattgttta--------------------------ttatttatctgaaattcagatttaaatgg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426872 39 -    863181 taattattta--------------------------ttatttatctgaaattcagatttaaatgg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578932 39 -  71996105 taattattta--------------------------ttatttatctgaaattcagatttaaatgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     268136 39 -    735854 taattattta--------------------------ttatttatctgaaattcagatttaaatgg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     217020 39 -   1829203 taattgctta--------------------------ttatttatctgaaattcagattttaatgg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389694 39 + 171630274 taattgttta--------------------------ttatttatctgaaattcagatttaaatgg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213699 39 +    515838 taattgctta--------------------------tgatttatctgaaattcagatttaaatgg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     845242 39 -   1771730 tcattgctta--------------------------tgatttatctgaaattcagatttaaatgg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     331007 39 -    383796 taattgttta--------------------------ttatttatctgaaattcagatttaaatgg
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               309348 39 + 123392446 taagtgttca--------------------------ttgtttatctgaaattcagatttaaatgg
i micMur3.chr6             C 0 I 1121
s proCoq1.NW_012149775v1     113871 39 -   1411461 taagtgttca--------------------------ttgtttatctgaaattcagatttaaatgg
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           261757 39 +  18854210 caagtatcca--------------------------ttgtttctctgatattcagatttaaatgg
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58052485 34 -  94987271 -----attta--------------------------ttgtttatcctaaactcaaatttaaatga
i mm10.chr17               C 0 C 0
s canFam3.chr35            26303088 65 +  26524999 aaatcttttaaaaaaataaaaaataaaaatgatgagttattcttctgggattcagatttaagtag
i canFam3.chr35            I 172 C 0
s dasNov3.JH580105            10369 34 -     45298 taacc-------------------------------acgtttacctgaaattcatgcttacctgg
i dasNov3.JH580105         C 0 C 0
e nomLeu3.chr1a            74911139  2 + 122973662 I

a score=395939.000000
s hg38.chr6_GL000254v2_alt  1433037 33 +   4827813 acatcctgtact----------ttta-tttgat-aaatctgacaT
s panTro5.chr6             30302420 33 + 175400573 acatcctgtact----------ttta-tttgat-aaatctgacaT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536740 33 + 173848474 acatcctgtact----------ttta-tttgat-aaatctgacaT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243854 33 +   2037526 acatcctgtact----------ttta-tttgat-aaatctgacaT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30790222 33 + 172585720 acatcctgtact----------ttta-tttgat-aaatctgacaT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079745 33 - 170955103 acatcctgtact----------ttta-tttgat-aaatctgacaT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     329057 33 +   1495729 acatcctgtact----------ttta-tttgat-aaatctgacaT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426911 33 -    863181 acatcctgtact----------ttta-tttgat-aaatctgacaT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29578971 33 -  71996105 acatcctgtact----------ttta-tttgat-aaatctgacaT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     268175 33 -    735854 acatcctgtact----------tgta-tttgat-aaatctgacaT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     217059 33 -   1829203 acatcctgtact----------ttta-tttgat-aaatctgacaT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389733 33 + 171630274 acatcctgtact----------ttta-tttgat-aaatctgacaT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213738 33 +    515838 acatcctgtact----------ttta-tttggt-aaatctgacaT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     845281 33 -   1771730 acatcctgtact----------ttta-tttgat-aaatctgacaT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     331046 33 -    383796 acatcctgtact----------ttta-tttgat-aaatctgacaT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     113910 28 -   1411461 gtgtcc-----t----------ttta-tttgtg-gaatctgacaa
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           261796 34 +  18854210 atgtcctacatt----------tttattttact-gaatctgataa
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58052519 42 -  94987271 -agacctgtatttccatctgTGTTTG-TTTGAt-ttgtttgttat
i mm10.chr17               C 0 I 140
s canFam3.chr35            26303153 34 +  26524999 atgtcctgtgtt----------tttg-tttgctgaaatctggcag
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            10403 33 -     45298 atgccctgagtt----------ctta-ttagcc-cactctggcaC
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               309387 1121 + 123392446 I
e nomLeu3.chr1a            74911139  2 + 122973662 I

a score=550628.000000
s hg38.chr6_GL000254v2_alt  1433070 52 +   4827813 TTTGACAAATCTCCagcacagagactgagagcagaagtcct---------taatttagatg
s panTro5.chr6             30302453 52 + 175400573 TTTGACAAATATCCagcacagagactgagagcagaagtctt---------taatttagatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536773 52 + 173848474 TTTGACAAATATCCagcacagagactgagagcagaagtctt---------taatttagatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243887 52 +   2037526 TTTGACAAATATCCagcacagagactgagagcagaagtcct---------taatttagatg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30790255 52 + 172585720 TTTAACAAATATCgagcacagagactgagagcagaagtcct---------taatttaggtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079778 52 - 170955103 TTTAACAAATATCgagcacagagactgagagcagaagtcct---------taatttaggtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     329090 52 +   1495729 TTTAACAAATATCgagcacagagactgagagcagaagtcct---------taatttaggtg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426944 52 -    863181 TTTAACAAATATCgagcacagagactgagagcagaagtcct---------taatttaggtg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29579004 61 -  71996105 TTTAACAAATATTGAACACAGAGACTGAGAGCAGAAGTCCTTAATTTAGGTAATTTAGGtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     268208 52 -    735854 TTTAACAAATATCgagcacagagactgagagcagaagtcct---------taatttaggtg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     217092 52 -   1829203 TTTAACAAATATCAagcacagagactgagagcagaagtcct---------taatttaggtg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389766 52 + 171630274 CTTGACAAATATTTagcacagagactgagagtagaagtcct---------taatttaaatg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213771 51 +    515838 CTTGACAAATATCCagcacagagactgagagcagaagtcct---------taatttaaat-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     845314 51 -   1771730 CTTGACAAATATCCagcacagagactgagagcagaagtcct---------taatttaaat-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     331079 52 -    383796 CTTGACAAATATCCagcacagagattgagagcagaagtcct---------taatttaaatg
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     113938 52 -   1411461 cactaTAAATATCCAGTCCAgagactgagagtgaaggtcct---------gaatttgtatg
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           261830 52 +  18854210 ccctaCAAATATCCagcacagagattgagagcaggggtaca---------taatttggatg
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26303187 37 +  26524999 ccctaCAAAGATCTGGCACAgtg---------------ctc---------tagttgagatg
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            10436 51 -     45298 -TCTCCATGGGCTCAGCCCAGAGACTGCCAGCCAGGGACCC---------CAGCTTAGGTG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               309387 1121 + 123392446 I
e mm10.chr17               58052561 140 -  94987271 I
e nomLeu3.chr1a            74911139  2 + 122973662 I

a score=30006.000000
s hg38.chr6_GL000254v2_alt  1433122 5 +   4827813 -gggga
s panTro5.chr6             30302505 5 + 175400573 -gggga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536825 5 + 173848474 -gggga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243939 5 +   2037526 -gggga
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30790307 5 + 172585720 -gggga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079830 5 - 170955103 -gggga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     329142 5 +   1495729 -gggga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     426996 5 -    863181 -gggga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29579065 5 -  71996105 -gggga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     268260 5 -    735854 -ggtga
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     217144 5 -   1829203 -gggga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389818 5 + 171630274 -gggga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213822 5 +    515838 -gggga
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     845365 5 -   1771730 -gggga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     331131 5 -    383796 -gggga
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     113990 3 -   1411461 -ggg--
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           261882 3 +  18854210 -tga--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58052701 4 -  94987271 -GAGG-
i mm10.chr17               I 140 C 0
s canFam3.chr35            26303224 4 +  26524999 --ggga
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            10487 5 -     45298 CGGGG-
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               309387 1121 + 123392446 I
e nomLeu3.chr1a            74911139 2 + 122973662 I

a score=1267079.000000
s hg38.chr6_GL000254v2_alt  1433127 107 +   4827813 cattgaggaaggccca-tcttcc---aaggtgatatttaaggggagacctgagagatgaataagagatcatcatgctcaaagaggagagaagggcattgcaggcacaggta
s panTro5.chr6             30302510 107 + 175400573 cattgaggaaggccca-tcttcc---gaggtgatatttaaggggagacctgagagatgaataagagatcatcatgctcagagaggagagaagggcattgcaggcacaggta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536830 107 + 173848474 cattgaggaaggccca-tcttcc---gaggtgatatttaaggggagacctgagagatgaataagagatcatcatgctcagagaggagagaagggcattgcaggcacaggta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     243944 107 +   2037526 cattgaggaaggccca-tcttcc---gaggtgatatttaaggggagacctgagaggtgaataagagatcatcatgctcagagaggagagaagggcattgcaggcacaggta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            48060781 107 - 122973662 cactGAggaaggcctg-tctccc---taggtgatatttaaggggagacctgagagatgaataagaggtcatcatgctcagagaggagagaagggcattccaggcacaggta
i nomLeu3.chr1a            n 2 I 16718
s rheMac8.chr4             30790312 107 + 172585720 cattgaggaaggccca-tcttct---gaggtgatatttagggggagacctgagagatgaataagagatcgtcatgcacagagaggagagaagggcattccaggaactggta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079835 107 - 170955103 cattgaggaaggccca-tcttct---gaggtgatatttagggggagacctgagagatgaataagagatcgtcatgcacagagaggagagaagggcattccaggaactggta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     329147 107 +   1495729 cattgaggaaggccca-tcttct---gaggtgatatttagggggagacctgagagatgaataagagatcgtcatgcacagagaggagagaagggcattccaggaactggta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     427001 107 -    863181 cattgaggaaggccca-tcttcc---gaggtgatatttaggggaagacctgagagatgaataagagatcgtcatgcacagagaggagagaagggcattccaggaactggta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29579070 107 -  71996105 cattgaggaaggccca-tcttcc---aaggtgatatttagggggagacctgagagatgaataagagatcgtcatgcacagagaggagagaagggcattccaggaactggta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     268265 107 -    735854 cattgaggaaggccca-tcttcc---gaggtgatatttagggggagacctgagagatgaataagagatcgtcatgcacagagaggagagaagggcattccaggaactggta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     217149 107 -   1829203 cactgaggaaggccca-tcttcc---aaggtgatatttagggggagacctgagagatgaataagagatcgtcatgcacagagaggagagaagggcattccaggaactggta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389823 107 + 171630274 cactgaggaaggccca-tcctct---ggggtgatatttaaggggaaacctgagggatgaataagagatcatcatgcaaagaggggaaacaagcgcattccaggcacagaca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213827 107 +    515838 cattgaggaaggccca-tcctcc---ggggtgatatttaaggggaaacctgagacatgaataagagatcatcgtgcagcgaggggagacaagggcattccaggcacagaca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     845370 107 -   1771730 cactgagaaaggccca-tcctct---ggggtgatatctaaggggaaacctgagagatgaataagagatcatcatgcaaagaggggagacaagggcattccaggcacagaca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     331136 107 -    383796 cactgaggaaggccca-tcctct---ggagtgatatttaaggggaaacctgagagatgaataagagatcatcatgcaaagaggggagacaagggcattccaggcacagaca
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     113993 100 -   1411461 -attgaggaaggtctc-cctgag---ggggtgacagttaaggggagatctgagtgat------gaatttatcgcacacagaaaggagggaggggcattccaggcagagaga
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           261885 105 +  18854210 ---tattgaaggtctctcttgag---ggcacaacatttaaggggattcctgagagatgaataagaatttatcattcacagagaagaggaaagcacattccaggcagagaga
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58052705 100 -  94987271 CATATAGAagagatgg-ttttctaaggaggggaca-ccaagtggaggtctaggagataaat---agtccatcccatgcaaagagggagcaggga------agggagagaga
i mm10.chr17               C 0 C 0
s canFam3.chr35            26303228 102 +  26524999 cactgaggaaggcctc-tcggg----gaggcaacatt---gaggagacttgagagatgaatgaaacgtcatcaggaacagagaggaaggaagggta-tccaggcccaggaa
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            10492  82 -     45298 -GCTGAGGAAGG-CTG-CCCGGG---GGGGTGATAT-------GAGACCTGACAGAGGCTT--GGCTCCGCCGGGCCCAGA--GGAGAGAGGGGC---CCAG---------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               309387 1121 + 123392446 I

a score=826597.000000
s hg38.chr6_GL000254v2_alt  1433234 60 +   4827813 acagctttgcaacagc-ctagaggc-aagaacaatttgggctaatttaagcaaagttgacac
s panTro5.chr6             30302617 60 + 175400573 acagctttgcaacagc-ctagaggc-aagagcaatttgggctaatttaagcaaagttgacac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536937 60 + 173848474 acagctttgcaacagc-ctagaggc-aagagcaatttgggctaatttaagcaaagttgacac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     244051 60 +   2037526 acagctttgcaacagc-ctagaggc-aagaacaatttgggctaatttaagcaaagttgacac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74911141 60 + 122973662 ACAGCTTTGCAACAGC-CTAGAGGC-AAGAACAATTTGGGCTAATTTAAGCAAAGTTGACAC
i nomLeu3.chr1a            I 2 C 0
s rheMac8.chr4             30790419 60 + 172585720 acagctttgcaacaac-ctagaggc-aagaacaatttgggctaatttaagcaaagttgacac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30079942 60 - 170955103 acagctttgcaacaac-ctagaggc-aagaacaatttgggctaatttaagcaaagttgacac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     329254 60 +   1495729 acagctttgcaacaac-ctagaggc-aagaacaatttgggctaatttaagcaaagttgacac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     427108 60 -    863181 acagctttgcaacaac-ctagaggc-aagaacaatttgggctaatttaagcaaagttgacac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29579177 60 -  71996105 acagctttgcaacaac-ctagaggc-aagaacaatttgggctaatttaagcaaagttgacac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     268372 60 -    735854 acagctttgcaacaac-ctagaggc-aagaacaatttgggctaatttaagcaaagttgacac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     217256 60 -   1829203 acagctttgcaacaac-ctagaggc-aagaacaatttggactaatttaagcaaagttgacac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389930 60 + 171630274 acagctttgcatcaac-ctagaggc-aaaaacaatttgggctaatttaagcaaagttggcac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213934 60 +    515838 acggctttgcatcaac-ctagaggc-aaaaccaatttgggctaatttaagcaaagttggcac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     845477 60 -   1771730 acagctttgcatcaac-ctagaggc-aaaaacaatttgggctaatttaagcaaagttggcac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     331243 60 -    383796 acagctttgcatcaac-ctagcggc-aaaaacaatttgggctaatttaagcaacgttgacac
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     114093 60 -   1411461 acagctttgcaaagac-ccagagac-aagaacaatttgggctaatttaagcaaagctggcac
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           261990 61 +  18854210 atagctttacaaaggc-tcagaagcaaaaaacaatttggtataatttaagcaaaggtggcac
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58052805 57 -  94987271 acagcactgtacagac-ccagaggc-aagaaga--ctgggctagtgtgggTGGAGCCG-TAC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26303330 61 +  26524999 acagctttgcaaagatgctgaggac-aggaacggttcagggcaatttaaagaaagctgatgc
i canFam3.chr35            C 0 I 219
s dasNov3.JH580105            10574 16 -     45298 --------------AC-CCAGAGGC-AAGAAC------------------------------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               309387 1121 + 123392446 I

a score=2936004.000000
s hg38.chr6_GL000254v2_alt  1433294 242 +   4827813 atgatgagttaggagtaaagatggcacaagataataatgaagacgtaggcagagactagaGCAAGT-----GAAATCTTAAGTTTT-AGTAG-TGGAATAAA-CAAGAGTGGAATGGGGGAGACCCAGGGTCACTACCTGCTAATGGCAT-TC-C-CAGAGTTGTATACGGCAGTCA-TCCCAAAGAGagaaaactatgccagtaatttaggtgagaaag---gatgatggcttgagata-gtgggatccagtggagc
s panTro5.chr6             30302677 242 + 175400573 atgatgagttaggagtaaagatggcacaagataataatgaagatgtaggcagagactagaACAAGT-----GAAATCTTAAGTTTT-AGTAG-TGGAATAAA-CAAGAGTGGAATGGGGGAGACCCAGTGTCACTACCTGCTAATGGCAT-TC-C-CAGAGCTGTATACGGCAGTCA-TCCCAAAGAGagaaaactatgccagtaatttaggtgagaaag---gatgatggcttgagata-gtgggatccagtggagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30536997 242 + 173848474 atgatgagttaggagtaaagatggcacaagataataatgaagacgtaggcagagactagaGCAAGT-----GAAATCTTAAGTTTT-AGTAG-TGGAATAAA-CAAGAGTGGAATGGGGGAGACCCAGTGTCACTACCTGCTAATGGCAT-TC-C-CAGAGTTGTATACGGCAGTCA-TCCCAAAGAGagaaaactatgccagtaatttaggtgagaaag---gatgatggcttgagata-gtgggatccagtggagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     244111 242 +   2037526 atgatgagttaggagtaaagatggcacaagataataatgaagacgtaggcagagactagaGCAAGT-----GAAATCTTAAGTTTT-AGTAG-TGGAATAAA-CAAGAGTGGAATGGGGGAGACCCAGGGTCACTACCTGCTAATGGCAT-TC-C-CAGAGATGTATACGGCAGTCA-TCCCAAAGAGagaaaactatgccagtaatttaggtgagaaag---gatgatggcttgagata-gtgggatccagtggagc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74911201 240 + 122973662 ATGATGAGTTGGAAGTAAAGATGGCACAAGATAAGAATGAAGACTTAGGCAGAGAGTAGAGCAAGT-----GAAATCTTAAGTTTT-AGTAG-TGGAATAAA-CAGGAGTGGAATGGGGGAGACCCAGGGTCACTACCTGCTAATGGCAT-TC-C-CAGAGCTGTACACAGCAGTCA-TCCCAAAGAGAGAAAAC--TGCcagtaatttaggtgagaaag---gatgatggcttgagata-gtaggatccagtggagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30790479 242 + 172585720 atgatgagttgggactaaagatggcacaagataataatgaagacttaggcagagactagaGCAAGC-----GAGATCTTAAGTTTT-AGTAG-TGGAATAAA-CAGGAACGGAATGAGGGAGACCCAGGGTCACTACCTGCTAATGGCAT-TC-C-CAGAGTTGTATATGGCAGTCA-TCCCAAAGAGagaaaactatgccagtaatttaggtgagaaag---gatgatggcttgagata-gtgggatccagtggagc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30080002 242 - 170955103 atgatgagttgggactaaagatggcacaagataataatgaagacttaggcagagactagaGCAAGC-----GAGATCTTAAGTTTT-AGTAG-TGGAATAAA-CAGGAACGGAATGAGGGAGACCCAGGGTCACTACCTGCTAATGGCAT-TC-C-CAGAGTTGTATATGGCAGTCA-TCCCAAAGAGagaaaactatgccagtaatttaggtgagaaag---gatgatggcttgagata-gtgggatccagtggagc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     329314 242 +   1495729 atgatgagttgggactaaagatggcacaagataataatgaagacttaggcagaaactagaGCAAGC-----GAGATCTTAAGTTTT-AGTAG-TGGAATAAA-CAGGAACAGAATGAGGGAGACCCAGGGTCACTACCTGCTAATGGCAT-TC-C-CAGAGTTGTATATGGCAGTCA-TCCCAAAGAGagaaaactatgccagtaatttaggtgagaaag---gatgatggcttgagata-gtgggatccagtggagc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     427168 242 -    863181 atgatgagttgggactaaagatggcacaagataataatgaagacttaggcagagactagaGCAAGC-----GAGATCTTAAGTTTT-AGTAG-TGGAATAAA-CAGGAATGGAATGAGGGAGACCCAGGGTCACTACCTGCTAATGGCAT-TC-C-CAGAGTTGTATATGGCAGTCA-TCCCAAAGAGagaaaactatgccagtaatttaggtgagaaag---gatgatggcttgagata-gtgggatccagtggagc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29579237 242 -  71996105 atgatgagttgggactaaagatggcacaagataataatgaagacttaggcagagactagaGCAAGC-----GAGATCTTAAGTTTT-AGTAG-TGGAATAAA-CAGGAATGGAATGAGGGAGACCCAGGGTCACTACCTGCTAATGGCAT-TC-C-CAGAGTTGTATATGGCAGTCA-TCCCAAAGAGagaaaactatgccagtaatttaggtgagaaag---gatggtggcttgagata-gtgggatccagtggagc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     268432 245 -    735854 atgatgagttgggactaaagatggcacaagataataatgaagacttaggcagagactagaGCAAGC-----GAGATCTTAAGTTTT-AGTAG-TGGAATAAA-CAGGAATGGAATGAGGGAGACCCAGGGTCACTACCTGCTAATGGCAT-TC-C-CAGAGTTGTATATGGCAGTCA-TCCCAAAGAGagaaaactatgccagtaatttaggtgagaaaggatgatgatggcttgagata-gtgggatccagtggagc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     217316 242 -   1829203 atgatgagttgggactaaagatggcacaagataataatgaagacttaggcagagactagaGCAAGT-----GAGATCTTAAGTTTT-AGTAG-TGGAATAAA-GAGGAATGGAATGAGGGAGACCCAGGGTCACTACCTGCTAATGGCAT-TC-C-CAGAGTTGTATATGGCAGTCA-TCCCAAAGAGagaaaactatgccagtaatttaggtgagaaag---gatgatggcttgagata-gtgggatccagtggagc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30389990 242 + 171630274 atgatgagttgggagtgaagatagcacaagataataatgaagacttaggcagaaactagaGCAAGT-----GAAATCTTAAGTTTT-GGTAG-TGGAATAAG-CCAGAATGCAATGGGGGAGACCCAGGGCTACTATATGCAAATGGCAT-TC-C-CAGAGTTGTGTAAGGCCATCA-TCCCAAAGAGagaaaactgtgccagtaatttaggtgagaaag---gatgatggcttgagtta-gtgggctccagtggagc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           213994 242 +    515838 atgatgagctgagagggaagagggcagaagataatgatgaagacttaggcagagaccagaGCAAGT-----GAAATCTTAAGTTTT-AGTAG-TGGAATAAG-CAAGAGTGCCATGGGGGAGACCCAGGGCTACTACATGCGAATTGCAT-TC-C-CGGAGTTGTATAAGGCCATCA-TCTCAAAGAGagaaaactatgccagtaatttaggtgagaaag---aatgatggcttgagtta-gtgggctccagtggagc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     845537 242 -   1771730 atgatgagttgggagtgacgatggcacaagataataatgaagacttcggcagagactagaGCAAGC-----GAAATCTTAAGCTTT-AGTCG-TGGAATAAG-CAAGAGTGCAATGGGGGAGACCCAGGGCTACTACATGCGAACTGCAT-TC-C-CGGAGTTGTATAAGGCCATCA-TCCCAAAGAGagaaaaccatgccagtaatttaggtgagaaag---gatgatggcttgagtta-gtgggctccagtggagc
i cebCap1.NW_016107755v1   C 0 I 315
s aotNan1.NW_018496904v1     331303 240 -    383796 ataatgagttgggagtgaagatggcacaagataataatgaagacttgggcagagactagaGCAAGT-----GAAATCTTAAGTTTT-AATAG-TAGAATAAG-CAAGAGTGCAATGGGGGAGACCCAGGGCTACTACATGTGAACGGCAT-TA-C-CAGAGTTGTATAAGGCCGTCA-TCCCAAAGAGagaaaactataccagtaatttaggtgag--ag---catgatggcttgagtta-gtgggctccagtggagc
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     114153 238 -   1411461 atgatgaactgcaggtaaagatggtacaagataatagtgaagactcggg----gactagagcaagt-----gaaatctgccatgttaaggag-tagaattagccaagagtgcaatgggggaga-ccagggccaccacatgctaatggcatccc-c-cagagttgcacaaggtggtca--cctgaagacggaaaacaattccagt-atttagatgggagag---gatgatggctcgagtca-gtggggtccggtggagc
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           262051 235 +  18854210 ---atgagctg-ggataaagATGGTACAAGATAATAATGAAGACTTAAG----GGCTGGAGCAAGT-----GCAATCTTCCATTTTGAGAAGTTAGAATAAGTCAAGAGTGCAATGGGGGAGACCCAAGGCCACCACATACTAATGACATCCC-C-CAGAGTTGTACAGGGTAGTCCATCCTGAAAAGagaaaactataacagtaatttaggtgggagat---gatgatggcttgagtta-gtgagatgcagtg----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58052862 196 -  94987271 ACAGGGAGCAGAACCTAAAGATGGTTCGA-ATAATAATGAGGACTTAGGCAAAGGGTTG---------------ATATTAGGTTCTGAGGAG-T----CAAG-GGAGACAAGGATGGGAGAGACCAA---CCTTTACTTGCTGCTAGCAC-CC-CTCAGAGTAACGTGGGATGGTCC----------------------------ATTTAGGTGGGA------GATGTTGGCTTGAAGGA-GTGGGAGCCGATGAAGC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26303610 219 +  26524999 atggtgagctggaggtcagggtggtgccag-ta--gatgaagactcaggcagagaccaggTCATTC-----AGGGTCTCCAGGTAGAAGCAG-TGCAATACG-ACGAGTTGGAATCAGGGC-CCCCAGGGCTTTGAAT--CCAGTGGTAT-CC-C-CAGAGTTTTGTGAATTGGTCA-TC-TGAAGAAAG-AAACTGCTCCAG-------GATGAGAGAG---GACATTAG----------GTGGGAGCTGATGCAGC
i canFam3.chr35            I 219 C 0
s dasNov3.JH580105            10590 202 -     45298 ----TGGGCTCGGAG---AGCCGGTGTAAA---------------TGTGCATGACCTGGGGCCAGTTGCGCGGGGTCTTCGGTTCTGAGTCA-TGCAATGGG-----------------GACACCCA-----CCGGCATGGCAGTGGCCT-CCGC-CAGGACCGTGCAAGGCGGTCC-TCCTGCA-AGGGAAAACGAGTCTGGTAATTCAGGTGAGGGAG---G-TGATGGCTGGAGTCAGGCGGGCGCCGGGGC---
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               309387 1121 + 123392446 I

a score=96295.000000
s hg38.chr6_GL000254v2_alt  1433536 8 +   4827813 tgaaaatg
s panTro5.chr6             30302919 8 + 175400573 tgaaaatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30537239 8 + 173848474 tgaaaatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     244353 8 +   2037526 tgaaaatg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74911441 8 + 122973662 tgaaaatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30790721 8 + 172585720 tgaaaatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30080244 8 - 170955103 tgaaaatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     329556 8 +   1495729 tgaaaatg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     427410 8 -    863181 tgaaaatg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29579479 8 -  71996105 tgaaaatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     268677 8 -    735854 tgaaaatg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     217558 8 -   1829203 tgaaaatg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30390232 8 + 171630274 tgaaaatg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           214236 8 +    515838 tgaaaatg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     846094 8 -   1771730 tgaaaatg
i cebCap1.NW_016107755v1   I 315 C 0
s aotNan1.NW_018496904v1     331543 8 -    383796 tgaaaatg
i aotNan1.NW_018496904v1   C 0 I 316
s proCoq1.NW_012149775v1     114391 8 -   1411461 tggaaatg
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           262286 1 +  18854210 -------g
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58053058 2 -  94987271 ------TG
i mm10.chr17               C 0 I 5
s canFam3.chr35            26303829 8 +  26524999 TAGAAAGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            10792 5 -     45298 TGGAG---
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               309387 1121 + 123392446 I

a score=83238.000000
s hg38.chr6_GL000254v2_alt  1433544 6 +   4827813 agcagg
s panTro5.chr6             30302927 6 + 175400573 agcagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30537247 6 + 173848474 agcagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     244361 6 +   2037526 agcagg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74911449 6 + 122973662 agcagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30790729 6 + 172585720 agcaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30080252 6 - 170955103 agcagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     329564 6 +   1495729 agcagg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     427418 6 -    863181 agcagg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29579487 6 -  71996105 agcagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     268685 6 -    735854 agcagg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     217566 6 -   1829203 agcaga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30390240 6 + 171630274 agcagt
i calJac3.chr4             C 0 I 305
s saiBol1.JH378341           214244 6 +    515838 agcagt
i saiBol1.JH378341         C 0 I 315
s cebCap1.NW_016107755v1     846102 6 -   1771730 agcagc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     331867 6 -    383796 agcagc
i aotNan1.NW_018496904v1   I 316 C 0
s proCoq1.NW_012149775v1     114399 6 -   1411461 agtggg
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           262287 6 +  18854210 aggaga
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58053065 6 -  94987271 AGCAGG
i mm10.chr17               I 5 C 0
s canFam3.chr35            26303837 6 +  26524999 GGCAGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            10797 5 -     45298 -GAAGG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               309387 1121 + 123392446 I

a score=480068.000000
s hg38.chr6_GL000254v2_alt  1433550 41 +   4827813 ccaatttgaagtgtattttgtagatagaattgacaa------------------aaaca
s panTro5.chr6             30302933 41 + 175400573 ccaatttgaagtgtattttgtagatagaattgacaa------------------aaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30537253 41 + 173848474 ccaatttgaagtgtattttgtagatagaattgacaa------------------aaaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     244367 41 +   2037526 ccaatttgaactgtattttgtaggtagaattgacaa------------------aaaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74911455 41 + 122973662 ccaatttgaagtgtattttgtagatagaattgacaa------------------aaaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30790735 41 + 172585720 ccaatttgaactgtattttgtagatagaattgacaa------------------aaaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30080258 41 - 170955103 ccaatttgaactgtattttgtagatagaattgacaa------------------aaaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     329570 41 +   1495729 ccaatttgaactgtattttgtagatagacttgacaa------------------aaaca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     427424 41 -    863181 ccaatttgaactgtattttgtagacagaattgacaa------------------aaaca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29579493 41 -  71996105 ccaatttgaactgtattttgtagacagaattgacaa------------------aaaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     268691 41 -    735854 ccaatttgaactgtattttgtagatagaattgacaa------------------aaaca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     217572 41 -   1829203 ccaatttgaagtgtattttatagatagaattgacaa------------------aaaca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30390551 41 + 171630274 ccaatttaaagtgcattttgtagatagaattgacag------------------aaatg
i calJac3.chr4             I 305 C 0
s saiBol1.JH378341           214565 41 +    515838 ccaatttaaagtgcattttgtagacagaattgacag------------------aaatt
i saiBol1.JH378341         I 315 C 0
s cebCap1.NW_016107755v1     846108 41 -   1771730 ccaatttaaagtgcattttgtagatagaattgacag------------------aaatg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     331873 41 -    383796 cctatttaaggtgcattttgtagatagaattgacag------------------caatg
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     114405 41 -   1411461 ccaatttaaagtgtgttttctaggtagaattgaccg------------------aagtg
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           262293 59 +  18854210 ccaatgtaaagtgtgttttgaagatagaattgacaggctcggcacctatggctcaagcg
i otoGar3.GL873550         C 0 I 271
s mm10.chr17               58053071 40 -  94987271 TTCATCTGAAGCATAATTTATAGATAGAACTGACAA------------------TGTG-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26303843 32 +  26524999 TGGGCTCAAAGCGTGTTTTGTAGATGGAAGCA---------------------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            10802 40 -     45298 CCCACTTGC-GTGGACTTGGAATGCAGAATGGACGG------------------GCATT
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               309387 1121 + 123392446 I

a score=534722.000000
s hg38.chr6_GL000254v2_alt  1433591 39 +   4827813 ttgaagtggcctttgggtgatgagggaggggaaaatcaa
s panTro5.chr6             30302974 39 + 175400573 ttgaagtggcctttgggtgatgagggaggggaaaatcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30537294 39 + 173848474 ttgaagtggcctttgggtgatgagggaggggaaaatcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     244408 39 +   2037526 ttgaagtggcctttgggtgatgagggaggggaaaatcaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74911496 39 + 122973662 ttgaagtggcctttgggcgatgagggaagggaaaatcaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30790776 39 + 172585720 ttgaagtggcctttgggcaatgagggaggggaaaatcaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30080299 39 - 170955103 ttgaagtggcctttgggcaatgagggaggggaaaatcaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     329611 39 +   1495729 ttgaagtggcctttgggcaatgagggaggggaaaatcaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     427465 39 -    863181 ttgaagtggcctttgggcaatgagggaggggaaaatcaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29579534 39 -  71996105 ttgaagtggcctttgggcaatgagggaggggaaaatcaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     268732 39 -    735854 ttgaagtggcctttgggcaatgagggaggggaaaatcaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     217613 39 -   1829203 ttgaagtggcctttgggcaatgaaggaggggaaaatcaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30390592 38 + 171630274 ttgaagtggcc-ttgggtgatgagggaggggaaaatcca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           214606 39 +    515838 ttgaagtggcctttgggtgatgagggaggagaaaatcaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     846149 39 -   1771730 ttgaagtggcctttgggtgatgagggaggggaaaatccg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     331914 39 -    383796 ttgaagtggcctttgggtgatgagggaggggaaaatcaa
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     114446 38 -   1411461 ttggcattgtcttcgggg-gtgaggaagaggaaagtcaa
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           262623 39 +  18854210 ttgaagtagcctttggggtatgaaggagaggaaaatcaa
i otoGar3.GL873550         I 271 C 0
s mm10.chr17               58053111 33 -  94987271 TTGGAGTAAGTTTCA------GAGGGCAAGAAAAATTAA
i mm10.chr17               C 0 I 1620
s canFam3.chr35            26303875 39 +  26524999 ATGCCATGGTCACTGGGGGTCCTGGGGGGGGGGCATCAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            10842 37 -     45298 TTGGGGTGGCCACTGGG-AATGA-GGAGAGGAAAGTCAA
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               309387 1121 + 123392446 I

a score=1906156.000000
s hg38.chr6_GL000254v2_alt  1433630 163 +   4827813 tcatgaatttctaatttctggaatggatgactgTGT------AATTGCAA--G-GCTGTTACAGAAATGGGCTACATACTTAAT--------GAGCTTTGGATGTTGAGATGGGATCACAAGAGAGGGGGTAAAGACAAAGTGATGAGATATTTTGTTTCA--GTTGGACCACA---GTCCACAA
s panTro5.chr6             30303013 163 + 175400573 tgatgaatttctaatttctggaatggatgactgTGT------AATTGCAA--G-GCTGTTACAGAAATGGGCTACATACTTAAT--------GAGCTTTGGATGTTGAGATGGGATCACAAGAGAGGGGGTAAAGACAAAGTGATGAGATATTTTGTTTCA--GTTGGACCACA---GTCCACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30537333 163 + 173848474 tgatgaatttctaatttctggaatggatgactgTGT------AATTGTAA--G-GCTGTTACAGAAATGGGCTACATACTTAAT--------GAGCTTTGGATGTTGAGATGGGATCACAAGAGAGGGGGTAAAGACAAAGTGATGAGATATTTTGTTTCA--GCTGGACCACA---GTCCACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     244447 163 +   2037526 tgatgaatttctaatttctggaatggatgactgTGT------AATTGCAA--G-GCTGTTACAGAAATGGGCTACATACTTAAT--------GAGCTTTGGATGTTGAGATGAGATCACAAGAGAGGGGGTAAAGACAAAGTGATGAGATATTTTGTTTCA--GTTGGACCACA---GTCCACAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74911535 171 + 122973662 gaatgaatttctgatttctagaatggatgactgTGT------GATTGCAA--G-GCTGTTACAGAAATGGGCTACATTCTTAAGCATCCAAACAGCTTTGGATGTTGAGATGGGATCACGAGAGAGGGAGTAAGGACAAAGTGATGAGATATTTTGTTTCA--GTTGGACAAGA---GTCCACAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30790815 156 + 172585720 ggatgaatttctaatttctggaatggttgactgTGT------AATTGCAA--A-GCTGTTACAGAAATGC-------TTTTAAT--------GAGCTTTGGATGTTGAGATGGGATCACAAGAGAGGGGGTAAGGACAAAGTGATGCGATATTTTGTTTCA--GTTGGACAACA---GTCCACAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30080338 151 - 170955103 ggatgaatttctaatttctggaatggttgactgTGT------AATTGCAA--A-GCTGTTACAGA------------TCTTAAT--------GAGCTTTGGATGTTGAGATGGGATCACAAGAGAGGGGGTAAGGACAAAGTGATGCGATATTTTGTTTCA--GTTGGACAACA---GTCCACAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     329650 162 +   1495729 ggatgaatttctaatttctggaatggatgactgTGT------AATTGCAA--A-GCTGTTACAGAAATGGGCGACATTCTTAAT--------GAGCTTTGGATGTTGAGATGGGATCACAAGAG-GGGGGTAAGGACAAAGTGATGCGATATTTTGTTTCA--GTTGGACAACA---GTCCACAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     427504 163 -    863181 ggatgaatttctaatttctggaatggatgactgTGT------AATTGCAA--A-GCTGTTACAGAAATGGGTGATATTCTTAAT--------GAGCTTTGGATGTTGAGATGGGATCACAAGAGAGGGGGTAAGGACAAAGTGATGCGATATTTTGTTTCA--GTTGGACAACA---GTCCACAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29579573 163 -  71996105 ggatgaatttctaatttctggaatggatgactgTGT------AATTGCAA--A-GCTGTTACAGAAATGGGTGATATTCTTAAT--------GAGCTTTGGATGTTGAGATGGGATCACAAGAGAGGGGGTAAAGACAAAGTGATGCGATATTTTGTTTCA--GTTGGACAACA---GTCCACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     268771 163 -    735854 gaataaatttctaatttctggaatggatgactgTGT------AATTGCAA--A-GCTGTTACAGAAATGGGTGATATTCTTAAT--------GAGCTTTGGATGTTGAGATGGGATCACAAGAGAGGGGGTAAGGACAAAGTGATGCGATATTTTGTTTCA--GTTGGACAACA---GTCCACAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     217652 163 -   1829203 ggatgaatttctaatttctggaatggatgactgTGT------AATTGCAA--A-GCTGTTACAGAAATGGGCAACATTCTCAAT--------GAGCTTTGGATGTTGAGATGGGATCACAAGAGAGGGGGTAAGGACAAAGTGATGAGATATTTTGTTTCA--GTTGGACAACA---GTCCACAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30390630 164 + 171630274 agacgaatttctaatttttggaatggacaaccatgt------aattgcaa--gtgctgttacagaaatgggcaacatgcttaat--------gagctttggatgttgagaagggatcacaagAGAGGGGGTAAGGACAGAGTGATGAGCTATTTTGTTTCA--GTTGGACAGCA---ATCCACAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           214645 166 +    515838 agatgaatttctaatttttggaatggacaaccgtgt------aattgcaaatgtgctgttacagaaatgggCGACATTCTTGAT--------GAGCTTTGGATGTTGAGATGGGATCACAAGAGAGGGGGTAAGGACAAAGTGATGAGCTGTTTTGTTTCA--GCTGGACAACA---GTCCACAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     846188 164 -   1771730 agacgaatttctaatttttggaatggacaaccatgt------cattgcaa--gtgctgttacagaaatgggcaacattCTTAAT--------GAGCTTTGGATGTTGAGATGGGATCACAAGAGAGGGGGTAAGGACAAAGTGATGAGCTGTTTTGTTTCA--GCTGGACAGCA---GTCCACAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     331953 163 -    383796 agatgaatttcgaatttttggaatggacaaccgtgt------aattgcaa--gtgctattacagaaataggcaacattTTTAAT--------GAGCTTTGGATGTTGAGATGGGATCACAAGAGACGGGGTAA-GACAAAGTGATGAGCTGTTTTGTTTCA--GCTGGACAACA---GTCCACAA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     114484 160 -   1411461 ggctgaattcctgatttctagaatgaacatttgtgt------caatgcgg--g-gctatgactgaaatgggaaacccttttaag--------gagcttcgagtgttgagatgggatcaccagagg---cctaaggacaaagtgatgagatgtctTGTTGCA--GTCGGACAACA---GTGCACGA
i proCoq1.NW_012149775v1   C 0 I 52
s otoGar3.GL873550           262662 162 +  18854210 agatgaattcc-aatttttggaatgcacaactgtgt------caatgcag--t-gctattactgaagtgggaaatgcttttaag--------gagctttgggtgttgagatgggatcaCTAGAGAGGTGGTAAAGACAAGGTGATGAGTTATCTTGTTTCA--GTTGAACAACA---GTGCATGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26303914 120 +  26524999 GGATGAGTT-CTAGCTCCTGGAAGGG---ACCAGGT------TCCTGTAA--A-GCT---------------------CTTGAG--------GAGAGCTGGGCCTTGGGATGGGGTCACGAGAGAGGGGGTGAGGACAAAGTGA-----------------------GACAGCCCCTGTGTGCAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            10879 157 -     45298 GGCTAAGTTCCCGGGCCCTGGAAGGCTCAGCGGGGTTGCTGGACATGCAG--G-ACTAAAACAGGAACG-------CTCTTAAG--------AAGCTCTGGGTTTCGAGACTGGATGAC------GGGGATGGGGACAGAGTGA-GCGGTATCGGCGTCCGTCGGTGGACAGCA---GTGCGCGA
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               309387 1121 + 123392446 I
e mm10.chr17               58053144 1620 -  94987271 I

a score=643980.000000
s hg38.chr6_GL000254v2_alt  1433793 60 +   4827813 TAACTGCTTCTCCTCTCTGCAGAATATTCACTAACATGCAC-GAGACCTGTTTGCTCTGTC
s panTro5.chr6             30303176 60 + 175400573 TAACTGCTTCTCCTCTCTGCAGAATATTCACTAACATGCAC-GAGACCTGTTTGCTCTGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30537496 60 + 173848474 TAACTGCTTCTCCTCTCTGCAGAATATTCACTAACATGCAC-GAGACCTGTTTGCTCTGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     244610 60 +   2037526 TAACTGCTTCTCCTCTCTGCAGAATATTCACTAACATGCAC-GAGACCTGTTTGCTCTGTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74911706 61 + 122973662 TAACTGCTTCTCCTCTCTGCAGAATATTCCCTAACATGCACTGAGACCTGTTTGCTCTGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30790971 61 + 172585720 TAACTGCTTCTCCTCTCTGCAGAATATTCCCTAACATGCACTGAGACCTGTTTGCTCTGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30080489 61 - 170955103 TAACTGCTTCTCCTCTCTGCAGAATATTCCCTAACATGCACTGAGACCTGTTTGCtctgtc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     329812 61 +   1495729 TAACTGCTTCTCCTCTCTGCAGAATATTCCCTAACATGCACTGAGACCTGTTtcctctgtc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     427667 61 -    863181 TAACTGCTTCTCCTCTCTGCAGAATATTCCCTAACATGCACTGAGACCTGTTTGCTCTGtc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29579736 61 -  71996105 TAACTGCTTCTCCTCTCTGCAGAATATTCCCTAACATGCACTGAGACCTGTTTGCTCTGtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     268934 61 -    735854 TAACTGCTTCTCCTCTCTGCAGAATATTCCCTAACATGCACTGAGACCTGTttcctctgtc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     217815 61 -   1829203 TAACTGCTTCTCCTCTCTGCAGAATATTCCCTAACATGCACTGAGACCTGTTTGCTCTGtc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30390794 61 + 171630274 TGACTGCCTCTCCTCTCTGCAGAATGTCCCCTAACATGCACTGAGACCTGTTTGCTCTGtc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           214811 57 +    515838 ----TGCCTCTCCTCTCTGCAGAATGTCCCCCAACATGCACTGAGACCTGTTTGCCCTGTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     846352 59 -   1771730 TGACTGCCTCTC--CTCTGCAGAATGTCCCCTAACATGCACTGAGACCTGTTTGCtccatc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     332116 61 -    383796 TGACTGCCTCTCCTCTCTGCAGAATGTCCCCTAACATGCACTGAGACCTGTTTGCTCTGTC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           262824 55 +  18854210 CAACTGCCTCTCCTCTCTGCAGGCTGTTTTCTAACACATGC------CCACCTGCTGTGTT
i otoGar3.GL873550         C 0 I 2
s canFam3.chr35            26304034 32 +  26524999 -----------------------GCACTCCCTCCACTGCACT--TACCTGCTGGCTC----
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            11036 48 -     45298 ---GTGCCCCTCCTCTCTGCAGAACGTTCTTGAACCTGC-------CGCGTGCGCcct---
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               309387 1121 + 123392446 I
e mm10.chr17               58053144 1620 -  94987271 I
e proCoq1.NW_012149775v1     114644 52 -   1411461 I

a score=128732.000000
s hg38.chr6_GL000254v2_alt  1433853 10 +   4827813 CTTCTCTCCT
s panTro5.chr6             30303236 10 + 175400573 CTTCTCTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30537556 10 + 173848474 CTTCTCTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     244670 10 +   2037526 CTTCTCTCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74911767 10 + 122973662 CTTCTCTCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30791032 10 + 172585720 CTTCTCTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30080550 10 - 170955103 cttctctcct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     329873 10 +   1495729 cttctctcct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     427728 10 -    863181 cttctctcct
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29579797 10 -  71996105 cttctctcct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     268995 10 -    735854 cttctctcct
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     217876 10 -   1829203 cttctctcct
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30390855 10 + 171630274 cttctctcct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           214868 10 +    515838 CTTCTCTCCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     846411 10 -   1771730 cttctctcct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     332177 10 -    383796 CTTCTCTCCT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     114696 10 -   1411461 cccctcttct
i proCoq1.NW_012149775v1   I 52 C 0
s otoGar3.GL873550           262881  2 +  18854210 CC--------
i otoGar3.GL873550         I 2 C 0
s canFam3.chr35            26304066 10 +  26524999 CTTCTCCCCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            11084  6 -     45298 ----cctcct
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               309387 1121 + 123392446 I
e mm10.chr17               58053144 1620 -  94987271 I

a score=2281388.000000
s hg38.chr6_GL000254v2_alt  1433863 160 +   4827813 TCCTCCCTGCCCTCCCCTTCATCATTTTCTCCTTTTTATTCTCTGTCCTTTCTTTCTGTTCTGTAGTCATCCTATTTCCTTGACAGAATCGAAGCCTCAGCCAGTGAGATAGATGGAGTGTAGGCAGCTAGAAATGGAAAGGATTCCTGTGCTTCTGTGA
s panTro5.chr6             30303246 160 + 175400573 TCCTCCCTGCCTTCCCCTTCATCATTTTCTCCTTTTTATTCTCTGTCCTTTCTTTCTGCTCAGTAGTCATCCTATTTCCTCGACAAAATCGAAGCCTCAGCCAGTGAGATAGATGGAGTGTAGGCAGCTAGAAATGGAAAGGATTCCTGTGCTTCTGTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30537566 160 + 173848474 TCCTCCCTGCCTTCCCCTTCATCATTTTCTCCTTTTTATTCTCTGTCCTTTCTTTCTGCTCAGTAGTCATCCTATTTCCTCGACAGAATCGAAGCCTCAGCCAGTGAGATAGATGGAGTGTAGGCAGCTAGAAATGGAAAGGATTCCTGTGCTTCTGTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     244680 160 +   2037526 TCCTCCCTGCCCTCCCCTTCATCATTTTCTCCTTTTTATTCTCTGTCCTTTCTTTCTGTTCTGTAGTCATCCTATTTCCTCGACAGAATCGAAGCCTCAGCCAGTGAGATAGATGGAGTGTAGGCAGCTAGAAATGGAAAGGATTCCTGTGCTTCTGTGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74911777 160 + 122973662 TCCTCCCTGCCTTCTCCTTCATCATTTTCTCCTTTTCATCCTCTGTCCTTTCTTTCTGCTCTGTAGTCATCCTACTTCCTTGATAGAATCGAAGTCTCAGCCAGTGACATAGATGGAGCGTAGGCAGCTAGAAATGGAAAGGATTCCTGTGCTTCTGTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30791042 160 + 172585720 TCCTCCCTGCCTTCCCCTTCATTATTTTCTCCTTTTTATTCTCTGTCCTTTCTTTCTGCTCTATAGTCATCCTATTTCCTCGACAGATTCAAAGTCTCAGCCAGTGAGATAGATGGAGTGTAGGCAGCTAGAAATGGAAAGGATTCCTGTGCTTCTGTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30080560 160 - 170955103 tcctccctgccttccccttcattattttctcctttttattctctgtcctttctttctgctctATAGTCATCCTATTTCCTCGACAGATTCAAAGTCTCAGCCAGTGAGATAGATGGAGTGTAGGCAGCTAGAAATGGAAAGGATTCCTGTGCTTCTGTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     329883 160 +   1495729 tcctccctgccttccccttcatcattttctcttttttattctctgtcctttctttctgctcTGTAGTCATCCTATTTTCTCGACAGATTCAAAGTCTCAGCCAGTGAGATACATGGAGTGTAGGCAGCTAGAAATGGAAAGGATTCCTGTGCTTCTGTGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     427738 160 -    863181 tcctccctgccttccCCTTCATCATTTTCTCTTTTTTATTCTCTGTCCTTTCTTTCTGCTCTGTAGTCATCCTATTTCCTCGACAGATTCAAAGTCTCAGCCAGTGAGATAGATGGAGTGTAGGCAGCTAGAAATGGAAAGGATTCCTGTGCTTCTGTGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29579807 160 -  71996105 tcctccctgccttccccttcattattttctcttttttattctctgtcctttctttctGCTCTGTAGTCATCCTATTTCCTCGACAGATTCAAAGTCTCAGCCAGTGAGATAGATGGAGTGTAGGCAGCTAGAAATGGAAAGGATTCCTGTGCTTCTGTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     269005 160 -    735854 tcctccctgccttccccttcatcattttctcttttttattctctgtcctttctttctgctctGTAGTCATCCTATTTCCTCGACAGATTCAAAGTCTCAGCCAGTGAGATAGATGGAGTGTAGGCAGCTAGAAATGGAAAGGATTCCTGTGCTTCTGTGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     217886 160 -   1829203 tcctccctgccttccCCTTCATCATTTTCTCTTTTTTATTCTCTGTCCTTTCTTTCTGCTCTGTAGTCATCCTATTTCCTCAACAGATTCAAAGTCTCAGCCAGTGAGATAGATGGAGTGTAGGCAGCTAGAAATGGAAAGGATTCCTGTGCTTCTGTGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30390865 160 + 171630274 tcctccctgccttccccttcatcattttctctttcatattctccgtcctttcttTTGGCTTTGTAGTCATCCTATTTCCTCAACAGAATCGGAGCCTCAGCCAGTGAGATGGATGGAGTGTAGGCAGCTAGAAATGGAAAGAATTCCTGTGCTTCTGTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           214878 158 +    515838 TCCTCCCTGCCTTCCCCTTCATCATTTTCTCTTTCGAATTCTCTGTCCTTTCTTTTAGCTTTGTAGTCATCCTATTTCCTCAACAGAATCGGAGCCTCAGCC--TGAGATGGATGGAGTGTAGGCAGCTAGAAACGGAAAGAATTCCCGTGCTTCTGTGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     846421 159 -   1771730 tcctccctgccttccccttcatcattttctctttcatattctctgtcctttctTTTGGCTTTGTGGTCATCCTATTTCCTCAACAGAATCGGAGTCTCAGCCAGTGAGATGGATGGAGTGTAGGCAGCTAGAAATGG-AAGAATTCCTGTGCTTCTGTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     332187 158 -    383796 TCCTCCCTGCCTTCCCTTTCATCATTT--TCTTTCATATTCTCTGTCCTTTCTTTTGGCTTTGTAGTTATCCTACTTACTCAACAGAATCGGAGCCTCAGCCAGTGAGATGGATGGAGTGTAGGCAGCTAGAAACGGAAAGAATCCCTGTGCTTCTGTGA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               310508 160 + 123392446 TCCTCCCTGCCTTCTCCTCCATCAGTCTCTCTTCCTTATTCTCTCTCCTTTCCTTTTGCTTTGTAGACATCTTATTTTCTCAACAGAATCAGAGGTTCAGCCAGCAAGACGGAGAGAGTGTAGGAAGCTAGAAACGGAAAGGTTTCTGGTGGTTCTGTGA
i micMur3.chr6             I 1121 I 220
s proCoq1.NW_012149775v1     114706 160 -   1411461 ccctccctcccttcttctccatcagtttctcttccttattctctctcctctctTTTTGCTTTGTAGACATCCTATTTCCTCAACAGAATCAGAGGTTCAGCCAGCGAGATGGACGGAGCGTAGGAAGCTAGAAATGGAAAGGTTTCCTGTGATTCTGTGA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           262883 158 +  18854210 --CTCCCTGCCTTCTCCTCCATCATTTTCTCTTTATTATTTTCTCTCCTTTCTTTTTGCTTTGTAGACATCCTATGTCCTTGACATAATCAGAAGCTTAGCCAGTGACATGGATGGAGTGTAGAAAGCTTGAAATGGAATGGTTTCCTGTGGTTCTGTGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26304076 124 +  26524999 CCCTCCTCATCTGTACCCCCACCACACTTGCTTTGTTATTCTCTCTTC-----------------------------------CAGAGTCAGAGA-TCAGCCAATGGGGTGCATGGAGTATAGGAAGCCAGACAGGAGTGTTTTTTTCCTGGTTGTGGGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            11090 142 -     45298 cctcccctgctcccctctccaccacttccgcctccccgttccctctccttccTTTCTGCTCTGCAGCCTTCCTGTTATGGC-ACAGAATCAGAGGCCCCACAGGGGAGCT----GGAGTGGGGGAGGCTGGAAACGGGGAGGCCTCC-------------
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58053144 1620 -  94987271 I

a score=2759248.000000
s hg38.chr6_GL000254v2_alt  1434023 240 +   4827813 TTCACAGTCTCCCAGTGGGCCT-TTAAACCATTTAACCTCTGTTGTCCAGACCCCAGGAAGAGGGGAGGCTGGAAGAGGGAAAAGAACTTGGACTGGAGCAGCAG-GGGAGGCCCTGGAGGAAGGAGCAGGTATCATCCTCCAGCAAA-TGGGCAA---TCCATtagtccaaactcctcattttaaaatt-g-aaaaaactgaag---------------------------ccTTTGCCCATTTTGACTAAACCAGA--TAAGAAATTATACAGTA
s panTro5.chr6             30303406 240 + 175400573 TTCACAGTCTCCCAGTGGGCCT-TTAAACCATTTAACCTCTGTTGTCCAGACCCCAGGAAGAAGTGAGGCTGGAAGAGGGAAAAGAACTTGGACTGGAGCAGCAG-GGGAGGCCCTGGAGGAAGGAGCAGGCATCATCCTCCAGCAAA-TGGGCAA---TCCATtagtccaaattcctcattttaaaatt-g-aaaaaactgaag---------------------------ccTTTGCCCATTTTGACTAAACCAGA--TAAGAAATTATACAGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30537726 240 + 173848474 TTCACAGTCTCCCAGTGGGCCT-TTAAACAATTTAACCTCTGTTGTCCAGACCCCAGGAAGAGGTGAGGCTGGAAGAGGGAAAAGAACTTGGACTGGAGCAGCAG-GGGAGGCCCTGGAGGAAGGAGCAGGCATCATCCTCCAGCAAA-TGGGCAA---TCCATtagtccaaattcctcattttaaaatt-g-aaaaaactgaag---------------------------ccTTTGCCCATTTTGACTAAACCAGA--TAAGAAATTATACAGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     244840 238 +   2037526 TTC-CAGTCTCCCAGTGGGCCT-TTAAACCATTTAACCTCTGTTGTCCAGACCCCAGGAAGAGGTGAGGCTGGAAGAGGGAAAAGAACTTGGACTGGAGCAGCA--GGGAGGCCCTGGAGGAAGGAGCAGGCATCATCCTCCAGCAAA-TGGGCAA---TCCATtagtccaaactcctcattttaaaatt-g-aaaaaactgaag---------------------------ccTTTGCCCATTTTGACTAAACCAGA--TAAGAAATTATACAGTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74911937 241 + 122973662 TTCACAGTCTCCCAGTGGGCCT-TTAAACCACTTAACCTCTGTTGTCCAGGCCCCAGGAAGAGGTGAGGCTGGAAGAGGGAAAAGAACTTGGACTGGAGCAGCAA-GGGATGCCCTGAAGGAAGGAGCAGGCATCATCCTCCAGCAAA-TGGGCAa---tcccttagtccaaactcctcattttaaaatt-gaaaaaaactgaag---------------------------ccTTTGCCCATTTTGACTAAACCAGA--TAAGAAATTATACAGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30791202 240 + 172585720 TTCACAGTCTCCCAGTGGGCCT-TTAAACCATTTAACCTCTGTTGTCCAGACCCCAGGAAGAGGTGAGGCTGGAAGAGGTAAAAGAACTTGGACTGGAGCAGCAG-GGGAGGCCCTGGAGGAAGGAGCAGGCATCATCCTCCAGCAAA-TGGGCAA---TCCATtagtccaaactcctcattttaaaatt-g-aaaaaactaaag---------------------------tcTTTGCCCATTTTGAATAAACCAGA--TAAGAAATTATACAGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30080720 240 - 170955103 TTCACAGTCTCCCAGTGGGCCT-TTAAACCATTTAACCTCTGTTGTCCAGACCCCAGGAAGAGGTGAGGCTGGAAGAGGTAAAAGAACTTGGACTGGAGCAGCAG-GGGAGGCCCTGGAGGAAGGAGCAGGCATCATCCTCCAGCAAA-TGGGCAA---TCCATtagtccaaactcctcattttaaaatt-g-aaaaaactaaag---------------------------tcTTTGCCCATTTTGAATAAACCAGA--TAAGAAATTATACAGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     330043 239 +   1495729 TTCACAGTCTCCCAGTGGGCCT-TTAAACCATTTAACCTCTGTTGTCCAGACCCCAGGAAGAGGTGAGGCTGGAAGAGGTAAAAGAACTTGGACTGGAGCAGCAG-GGGAGGCCCTGGAGGAAGGAGCAGGCATCATCCTCCAGCAAA-TGGGCAA---TCCATTAGTCCAAACTCCTCATTTT-AAATT-G-AAAAAACTAAAG---------------------------TCTTTGCCCATTTTGAATAAACCAGA--TAAGAAATTATACAGTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     427898 239 -    863181 TTCACAGTCTCCCAGTGGGCCT-TTAAACCATTTAACCTCTGTTGTCCAGACCCCAGGAAGAGGTGAGGCTGGAAGAGGTAAAAGAACTTGGACTGGAGCAGCAG-GGGAGGCCCTGGAGGAAGGAGCAGGCATCATCCTCCAGCAAA-TGGGCAA---TCCATtagtccaaactcctcattttaaaatt-g-aaaaaactaaag---------------------------ccTTTGCCCATTTTGACTAAACCAGA--TAAGAAA-TATACAGTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29579967 240 -  71996105 TTCACAGTCTCCCAGTGGGCCT-TTAAACCATTTAACCTCTGTTGTCCAGACCCCAGGAAGAGGTGAGGCTGGAAGAGGTAAAAGAACTTGGACTGGAGCAGCAG-GGGAGGCCCTGGAGGAAGGAGCAGACATCATCCTCCAGCAAA-TGGGCAA---TCCATtagtccaaactcctcattttaaaatt-g-aaaaaactaaag---------------------------tcTTCGCCAATTTTAACTAAACCAGA--TAAGAAATTATACAGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     269165 239 -    735854 TTCACAGTCTCCCGGTGGGCCT-TTAAACCATTTAACCTCTGTTGTCCAGACCCCAGGAAGAGGTGAGGCTGGAAGAGGTAAAAGAACTTGGACTGGAGCAGCAG-GGGAGGCCCTGGAGGAAGGAGCAGGCATCATCCTCCAGCAAA-TGGGCAA---TCCATtagtccaaactcctcattttaaaatt-g-aaaaaactaaag---------------------------tcTTTGCCCATTTTGACTAAACCAGA--TAAGAAA-TATACAGTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     218046 240 -   1829203 TTCACAGTCTCCCAGTGGGCCT-TTAAACCATTTAACCTCTGTTGTCCAGACCCCAGGAAGAGGTGAGGCTGGAAGAGGCAAAAGAACTTGGACTAGAGCAGCAA-GGGAGGCCCTGGAGGAAGGAGCAGGCATCATCCTCCAGCAAA-CAGGCAA---TCTATTAGTCCAAACTCCTCATTTTAAAATT-G-TAAAAACTAAAG---------------------------TCTTTGCCCATTTTGACTAAACCAGA--TAAGAAATTATACAGTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30391025 239 + 171630274 TCCATGGTCTCCCAGT-GGCCT-TTAAACCACTTAACCTCTGTTGTCCAGACCCCAGGAAGAGGTAAGGCTGGAAGAGGGAAAAGAACTTGGACTGAAGCAGCAG-GGAAAGCCCTGGAGGAAGAAGCCGGCATCACCCCCCAGCAAA-TGGGCAA---TCCCTTAGTACAAACTCCTCATTTTAAATTG-A-AAAAAACTGAAG---------------------------GCTTTACCCATGTTGACTAAACCAGA--TAAGAAATTATACAGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           215036 229 +    515838 TCCACAGTCTCCCAGT-GGCCT-TTAAACCACTTAACCTCTGTTGTCCAGACCCCAGGAAGAGGTGAGGCTGGAAGAGGGAAAAGA------ACTGAAGCAGCAG-GGAAGGCCCTGGAGGAAGGAGCCGGCATCACCACCCAGCAAA-TGGGCAA---TCCCTTAGTACAAA---CTCATTTTAAATTG-A-AAAAAACTGAA----------------------------GCCTTGCCGATTTTGACTAAACCGGA--TAAGAAATTATACAGTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     846580 237 -   1771730 TCCA--GTCTCCCAGT-GGCCT-TTAAACCATTTAACCTCTGTTGTCCCGACCCCAGGAAGAGGTGAGGCTGGAAGCGGGTAAAGAACTTGGACTGAAGCATCAA-GGAAGGCCCTGGAGGAAAGAGCCAGCATCATCCTCCAGCAAA-TGGGCAA---TCCCTTAGTACAAACTCCTCATTTTAAATTG-A-AAAAAACTGAAG---------------------------CCTTTGCCCATTTTGACTAAACCAGA--TAAGAAATTACACAGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     332345 240 -    383796 TCCACAGTCTCCCAGT-GGCCT-TTAAACCACTTAACCTCTGTTGTCCAGACCCCAGGAAGAGGTGAGGCTGGAAGAGGGAAAAGAACTTGGACTGAAGCATCAA-GGAAGGCCCTGGAGGAAGGAGCCGGCATCACCCCCCAGCAAA-TGGTCAA---TCCCTTAGTACAAACTCCTCATTTTAAATTGAA-AAAAAACTGAGG---------------------------GCTTTGCCCATTTTGACTCAACCAGA--TAAGAAATTATACAGTA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     114866 239 -   1411461 GGCCCGGTTTTCCAGTGGACCTAGCAAGCCATTTAACCTCTC-TGCCCAGA-CCCAGGAACGGATGAGGCTGG-GGAGGCAGAAGAACATGGACTGAAGCAGCTC-AGGAGGCACTAGAGGAAGGAGCAGGCATCATCCTCTAGCAGA-GGGGAAA---TCCATTAGTCC-ATCTCCTCACTTGAAAGTT-G-AGAAAGCTAAAA---------------------------CCTTTGCCCATTCTGACCAAACTAGGTTTAAGAAATTGCACAGTA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           263041 235 +  18854210 ----------TCCAGTGGACCTAGTAAATCATTTAACATCTCTTGCACAGACCCCAGGAAGGGGTGAGGCTGGAGGAGGGAGAAGGACTTGGACTGAAGCAGCTCTAAGAGGCACTGGAAGAAGGAGCATCCATTGTTCTCTAGCAGACGGGAaaa---tccattagtccaaactcctcactctcaagtt-g-agaaagctgaag---------------------------cTTTTGTCCATTCTGACCAAACTAGGTTTATAGAACTGCACAGTA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26304200 172 +  26524999 TCTGCAGTCTCCTAG-GACCCG-GTAAACC---TGCCCTCTCTT--CCTGGTCCTGGGGAGGGCTGAGGCAGG-------------------------------G-GGGAGGCT---GGAGAAGGAG--------------TGGCAGA-TGGCAAAGCTCCTATCAGCCCAGACCCTTCATTTTA------C-A--------------------------------------TCTTTGCCTGTTGTGACTGAACTGG---CAACAAGCTGCCCAGAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            11232 181 -     45298 ----CCGCCTCCTGCTGGACTC----------------TCTGCC--TTGGACCCCGGGAAGGGGTGAGGCTGG------------------------------GC-GGGAGGCACTGCAGGAAGGAGCGGG----------------A-TGGGCGG----------------GCGCCTGGCGGTGAAGTGAG-GAAACAGTGAAGTGAGGAAACCCGGCCCACTCGGGAACTCCCTCGCCCATTCTGACCGGCAACGT--GGAGACAATG-------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               310668 220 + 123392446 I
e mm10.chr17               58053144 1620 -  94987271 I

a score=857275.000000
s hg38.chr6_GL000254v2_alt  1434263 85 +   4827813 TGAAGGAACATTGACACC--ACTTAGAAACAGTAGGGTGTCAAGATTTGACTTGACTCTTGTTAGTTTTGTGACTATAAAGTGAAAA
s panTro5.chr6             30303646 85 + 175400573 TGAAGGAACATTGACACC--ACTTAGAAACAGTAGGGTGTCAAGATTTGACTTGACTCTTGTTAGTTTTGTGACTATAAAGTGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30537966 85 + 173848474 TGAAGGAACATTGACACC--ACTTAGAAACAGTAGGGTGTCAAGATTTGACTTGACTCTTGTTAGTTTTGTGACTATAAAGTGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     245078 85 +   2037526 CGAAGGAACATTGACACC--ACTTAGAAACAGTAGGGTGTCAAGATTTGACTTGACTCTTGTTAGTTTTGTGACTATAAAGTGAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74912178 85 + 122973662 TGAAGGAACACTGACACC--ACTTAGAAACAGTAGGGTGTCAAGATTTGACTTGACTCTTGTTAGTTTTGTGACTATAAAGTGGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30791442 85 + 172585720 TGAAGGAACATTGACACC--ACTTAGAAATACTAGGGTGTCAAGATGTGACTTGACTCTTGTTAGTTTTGTGACTACAAAGTGAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30080960 85 - 170955103 TGAAGGAACATTGACACC--ACTTAGAAATACTAGGGTGTCAAGATGTGACTTGACTCTTGTTAGTTTTGTGACTACAAAGTGAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     330282 85 +   1495729 TGAAGGAACATTGACACC--ACTTAGAAATACTAGGGTGTCAAGATGTGACTTGACTCTTGTTAGTTTTGTGACTACAAAGTGAAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     428137 84 -    863181 TGAAGGAACATTGACACC--ACTTAGAAATAGTA-GGTGTCAAGATGTGACTTGACTCTTGTTAGTTTTGTGACTACAAAGTGAAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29580207 85 -  71996105 TGAAGGAACATTGACACC--ACTTAGAAATAGTAGGGTGTCAAGATGTGACTTGACTCTTGTTAGTTTTGTGACTACAAAGTGAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     269404 84 -    735854 TGAAGGAACATTGACACC--ACTTAGAAATAGTA-GGTGTCAAGATGTGACTTGACTCTTGTTAGTTTTGTGACTACAAAGTGAAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     218286 85 -   1829203 TGAAGGAACATTGCCACC--ACTTAGAAACAGTAGGGTGTCAAGATGTGACTTGACTCTTGTTAGTTTTGTGACTACAAAGTGAAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30391264 43 + 171630274 TGAATAACAACTGACACC--ACTTACAAAC------------------------------------------ACTATAAAATGAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           215265 43 +    515838 TGAAGGAACATTGACAAG--ACTTAGAAAC------------------------------------------ACTATAAAGTGAAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     846817 43 -   1771730 TGAAGGAAAATTGACAAC--ACTTAGAAAC------------------------------------------ACTGTAAAGTGAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     332585 43 -    383796 TGAAGGAACATCGACAAC--ACTTAGAAAC------------------------------------------ACTATAAAGTGAAAA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               310888 85 + 123392446 TGAAGGAACATTGATACC--ACTTGGAAACGATAGGGTTTCAAGATGTGACTGAACTCTTGTTAGTTTTGTGACTGTAAAATGGAAA
i micMur3.chr6             I 220 C 0
s proCoq1.NW_012149775v1     115105 85 -   1411461 TGAAGGAACATTGATACC--ACTTGGAAACGATAGGATTTCAAGATTTGACTCAACTCTTGttagtttcgtgactgtaaagtggaaa
i proCoq1.NW_012149775v1   C 0 I 1144
s otoGar3.GL873550           263276 73 +  18854210 TGAAGGAACGTTGACATC--ACTTGGACACAATAGGGTTTC------------AACTTTTGTTAGTTTTGTGGCTGTAAAGTGGAAA
i otoGar3.GL873550         C 0 I 2
s canFam3.chr35            26304372 79 +  26524999 CAAAGGAACAC--ACACC---TTCAGAAAC---TGATTTCCAAGGTTTGACTCAACTCCTGTTAGCTTTGTGGCTTTAGACTGGGAA
i canFam3.chr35            C 0 I 6
s dasNov3.JH580105            11413 83 -     45298 -GAGGCCACACCTCCACCTGGCGTCCAAGCAC--ATGCTTCAGGGCGTGACTC-ACGCCTGCTGGCTTTGTGACTGCACAGTGGAAG
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58053144 1620 -  94987271 I

a score=56488.000000
s hg38.chr6_GL000254v2_alt  1434348  8 +   4827813 CAATTATA--
s panTro5.chr6             30303731  8 + 175400573 CAATTATA--
i panTro5.chr6             C 0 I 6
s panPan2.chr6             30538051  8 + 173848474 CAATTATA--
i panPan2.chr6             C 0 I 6
s gorGor5.CYUI01015528v1     245163  8 +   2037526 CAATTATA--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74912263  8 + 122973662 CAATTATA--
i nomLeu3.chr1a            C 0 I 6
s rheMac8.chr4             30791527  3 + 172585720 CAA-------
i rheMac8.chr4             C 0 I 5
s macFas5.chr4             30081045  3 - 170955103 CAA-------
i macFas5.chr4             C 0 I 5
s macNem1.NW_012012100v1     330367  3 +   1495729 CAA-------
i macNem1.NW_012012100v1   C 0 I 5
s cerAty1.NW_012002535v1     428221  8 -    863181 CAATTATA--
i cerAty1.NW_012002535v1   C 0 I 6
s chlSab2.chr17            29580292  8 -  71996105 CAATTATA--
i chlSab2.chr17            C 0 I 6
s manLeu1.NW_012107142v1     269488  8 -    735854 CAATTATA--
i manLeu1.NW_012107142v1   C 0 I 6
s colAng1.NW_012115577v1     218371  8 -   1829203 CAATTATA--
i colAng1.NW_012115577v1   C 0 I 6
s calJac3.chr4             30391307  8 + 171630274 CAATTATA--
i calJac3.chr4             C 0 I 6
s saiBol1.JH378341           215308  8 +    515838 CAATTATA--
i saiBol1.JH378341         C 0 I 6
s cebCap1.NW_016107755v1     846860  8 -   1771730 CAATTATA--
i cebCap1.NW_016107755v1   C 0 I 6
s aotNan1.NW_018496904v1     332628  8 -    383796 CAATTATA--
i aotNan1.NW_018496904v1   C 0 I 6
s micMur3.chr6               310973  8 + 123392446 AAATTATA--
i micMur3.chr6             C 0 I 1126
s otoGar3.GL873550           263351  8 +  18854210 TACTTACA--
i otoGar3.GL873550         I 2 C 0
s canFam3.chr35            26304457  8 +  26524999 TACTTATA--
i canFam3.chr35            I 6 C 0
s dasNov3.JH580105            11496 10 -     45298 TAATCACATA
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58053144 1620 -  94987271 I
e proCoq1.NW_012149775v1     115190 1144 -   1411461 I

a score=-8261.000000
s hg38.chr6_GL000254v2_alt  1434356 3 +   4827813 TC-A
s panTro5.chr6             30303745 3 + 175400573 TC-A
i panTro5.chr6             I 6 C 0
s panPan2.chr6             30538065 3 + 173848474 TC-A
i panPan2.chr6             I 6 C 0
s gorGor5.CYUI01015528v1     245171 3 +   2037526 TC-A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74912277 3 + 122973662 TC-A
i nomLeu3.chr1a            I 6 C 0
s rheMac8.chr4             30791535 3 + 172585720 TC-A
i rheMac8.chr4             I 5 C 0
s macFas5.chr4             30081053 3 - 170955103 TC-A
i macFas5.chr4             I 5 C 0
s macNem1.NW_012012100v1     330375 3 +   1495729 TC-A
i macNem1.NW_012012100v1   I 5 C 0
s cerAty1.NW_012002535v1     428235 3 -    863181 TC-A
i cerAty1.NW_012002535v1   I 6 C 0
s chlSab2.chr17            29580306 3 -  71996105 TC-A
i chlSab2.chr17            I 6 C 0
s manLeu1.NW_012107142v1     269502 3 -    735854 TC-A
i manLeu1.NW_012107142v1   I 6 C 0
s colAng1.NW_012115577v1     218385 4 -   1829203 TCAA
i colAng1.NW_012115577v1   I 6 C 0
s calJac3.chr4             30391321 1 + 171630274 T---
i calJac3.chr4             I 6 C 0
s saiBol1.JH378341           215322 2 +    515838 TC--
i saiBol1.JH378341         I 6 C 0
s cebCap1.NW_016107755v1     846874 2 -   1771730 TC--
i cebCap1.NW_016107755v1   I 6 C 0
s aotNan1.NW_018496904v1     332642 2 -    383796 TC--
i aotNan1.NW_018496904v1   I 6 C 0
s otoGar3.GL873550           263359 2 +  18854210 TC--
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26304465 2 +  26524999 TC--
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            11506 3 -     45298 TC-A
i dasNov3.JH580105         C 0 I 143
e micMur3.chr6               310981 1126 + 123392446 I
e mm10.chr17               58053144 1620 -  94987271 I
e proCoq1.NW_012149775v1     115190 1144 -   1411461 I

a score=1315908.000000
s hg38.chr6_GL000254v2_alt  1434359 116 +   4827813 AAAAATTTGTTTTAGGGATGATA-AAAGTAATTTATacttattcgttcaa-aagtacttattaaggacctactatgtg-cagatacagtgttgaaagctagggactcagtggagatcaa
s panTro5.chr6             30303748 116 + 175400573 AAAAAATTGTTTTAGGGATGATA-AAAGTAATTTATatttattcgttcaa-aagtacttattaaggacctactatgtg-cagatacagtgttgaaagctagggactcagtggagatcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30538068 116 + 173848474 AAAAAATTGTTTTAGGGATGATA-AAAGTAATTTATatttattcgttcaa-aagtacttattaaggacctactatgtg-cagatacagtgttgaaagctagggactcagtggagatcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     245174 116 +   2037526 AAAAAATTGTTTTAGGGATGATA-AAAGTAATTTATatttattcgttcaa-aagtacttattaaggacctactatgtg-cagatacagtgttgaaagctagggactcagtggagatcaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74912280 117 + 122973662 AAAAAATTGTTTTAGGGATGATA-AAAGTAATTTATatttattcattcaa-aaatacttattaaggacctactatgtgccagatacagtgttgaaagctggggactcagtggagatcaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30791538 117 + 172585720 AAAAAATTGTTTTAGGGATGATA-AAAGTAATTTATatttattcatccaa-aaatacttattaaggacctactatgtgccagatacagtgttgaaagatggggactcagtggagatcaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30081056 117 - 170955103 AAAAAATTGTTTTAGGGATGATA-AAAGTAATTTATatttattcatccaa-aaatacttattaaggacctactatgtgccagatacagtgttgaaagatggggactcagtggagatcaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     330378 117 +   1495729 AAAAAATTGTTTTAGGGATGATA-AAAGTAATTTATatttattcatccaa-aaatatttattaaggacctactatgtgccagatacagtgttgaaagatggggactcagtggagatcaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     428238 117 -    863181 AAAAAATTGTTTTAGGAATGATA-AAAGTAATTTATatttattcatccaa-aaatacttattaaggacctactatgtgccagatacagtgttgaaagatggggactcagtggagatcaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29580309 117 -  71996105 AAAAAATTGTTTTAGGGATGATA-AAAGTAATTTATatttattcatccaa-aaatacttattaaggacctactatgtgccagatacagtgttgaaagatggggactcagtggagatcaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     269505 117 -    735854 AAAAAATTGTTTTAGGAATGATA-AAAGTAATTTATatttattcatccaa-aaatacttattaaggacctactatgtgccagatacagtgttgaaagatggggactcagtggagatcaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     218389 117 -   1829203 AAAAAATTGTTTTAGGGATGATA-AAAGTAATTTATatttattcattcaa-aaatacttattaaggacctactatgtgccagatacagtgttgaaagatggggactcagtggacatcaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30391322 116 + 171630274 AAAAAATTGTTTTAGGAATGA-A-AAAGTAATTTATatttattcattcaacaaatactgattaaagacctactatgtgccagatgcactgttggaagctggggactcagtggagatc-a
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           215324 114 +    515838 AAAAAATTGTTTTAGGAATGA-A-AAAGTAATTTATatttattcattcaacaaatactgattaaagacctactatgtgccagat--agtgttggaagccagggactcagtggagatc-a
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     846876 116 -   1771730 AAAAAATTGTTTTAGGAATGA-A-AAAGTAATTTATatttattcattcaacaaatactgattaaagacctactatgtgccagatacagtgttggaagccggggactcagtgaagatc-a
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     332644 116 -    383796 AAAAAATTGTTTTAGGAATGA-A-AAAGTAATTTACatttattcattcaacaaatactgattaaagacctactatgtgccagatacagtgttggaagccggggactcagtggacatc-a
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           263361 118 +  18854210 AAAGAATTCTTTTAAAGATCAAA-GAAAATAGTTATattcattacttcaacaagtatttactaagtacttactgtgctccagatacagtgttggaagctggggactcagcagataacaa
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26304467 108 +  26524999 AAAGACTTGTTTTC---ATGATC-AAAGGAAA------tcatttatccaacagatatttaggaagcccctactatgtgccagatactgtg-agggggctggggctccaaagaggatgaa
i canFam3.chr35            C 0 I 1269
s dasNov3.JH580105            11652 115 -     45298 AAAGAATCGTTTTAAGGATCAAATGAAGTGCTCTACatctattcaggcaacacgtgtttattaagcacctactatgtgcctggaactgtgcgtagagctggggactctgcagaga----
i dasNov3.JH580105         I 143 C 0
e micMur3.chr6               310981 1126 + 123392446 I
e mm10.chr17               58053144 1620 -  94987271 I
e proCoq1.NW_012149775v1     115190 1144 -   1411461 I

a score=1154071.000000
s hg38.chr6_GL000254v2_alt  1434475 117 +   4827813 cacagacag--gaacctggcctcatgggaattctaaactctagcggggagaac--agctcattaacaaataaataagtgtaatgtatggtaggtaccacgaagcaacataaagctgggaag
s panTro5.chr6             30303864 117 + 175400573 cacagacag--gaacctgccctcatgggaattctaaactctagcggggagaac--agctcattaacaaataaataagtggaatgtatggtaggtaccatgaagcaacataaagctgggaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30538184 116 + 173848474 cacagacag--gaacctactctcatgggaattctaaactctagcggggagaac--agctcattaacaaataaataagtggaatgtatggtaggta-cacgaagcaacataaagctgggaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     245290 117 +   2037526 cacagacag--gaacctgccctcatgggaattctaaactctagcggggagaac--agctcattaacaaataaataagtgtaatgtatggtaggtaccacgaagcaacataaagctgggaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74912397 115 + 122973662 cacagaccg--gaacctgccctcatgggaat--taaactctagtggggagaac--agctcattaacaaataaataagtggaatgtatggtaggtaccatgaagcaacataaagctgggaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30791655 115 + 172585720 cacagacag--gaacctgccctcatgggaat--taaactctagtggggaaaac--agctcattaacaaataattaagtggaatctatggtaggtaccatgaagcaacataaagctgggaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30081173 115 - 170955103 cacagacag--gaacctgccctcatgggaat--taaactctagtggggaaaac--agctcattaacaaataattaagtggaatctatggtaggtaccatgaagcaacataaagctgggaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     330495 115 +   1495729 cacagacag--gaacctgccctcatgggaat--taaactctagtggggaaaac--agctcattaacaaataattaagtggaatctatggtaggtaccatgaagcaacataaagctgggaag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     428355 115 -    863181 cacagacag--gaacctgccctcatgggaat--taaactctagtggggaaaac--agctcattaacaaataaataagtggaatctatagtaggtaccatgaagcaacataaagctgggaag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29580426 115 -  71996105 cacaaacag--gaacctgccctcatgggaat--taaactctagtggggaaaac--agctcattaacaaataaataagtggaatctatggtaggtaccatgaagcaacataaagctgggaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     269622 115 -    735854 cacagacag--gaacctgccctcatgggaat--taaactctagtggggaaaac--agctcattaacaaataaataagtggaatctatggtaggtaccatgaagcaacataaagctgggaag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     218506 115 -   1829203 cacagacag--gaacctgccctcacgggaat--taaactctagtggggaaaac--agctcattaacaaataaataagtagaatctatggtaggtaccatgaaacaacataaagctgggaag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30391438  98 + 171630274 ctcagaca------------------ggaat--tacactgcagtcaggaaaac--agctcc-taacaaataagtaagtggaatgtgtggcaggtacgatgaagcaacgtatagctgggaag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           215438 114 +    515838 cgcagacag--gaacctgccctcatgggaat--tacactgcagtcaggaaaac--agctca-taacaaataagtaagtggaatgtatggcaggtatgacgaagcaacgtataactgggaag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     846992 114 -   1771730 cacaggcag--gaacctgcactcatgggaat--tacactgcagtcaggaaaac--agctca-taacaaataagtgagtggaatgtatggcaggtaccatgaagcaatgtatagctgggaag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     332760 114 -    383796 cacagacag--gaacctgccctcatgggaat--tgcactgcagtcaggaaaac--agctca-taacaaataagtaagtggaatgtatggcaggtactatgaagcaacgtatagctgggaag
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           263479 114 +  18854210 agtagacag--gagccttctcccataagaat--tgcattctaatga-gaaaac--agatgattaacaaataaataagtgaaatgtatggtaggctccatgaagcaaagtaaagctggcaag
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            11767 103 -     45298 -acaagcaggcgagcc---cctc----------tgccttctaatggggaggacggagatca----ccaagggaggagtggaacgtgccggacttgctgtgaggcagcgtgagcctgtgaag
i dasNov3.JH580105         C 0 I 910
e micMur3.chr6               310981 1126 + 123392446 I
e mm10.chr17               58053144 1620 -  94987271 I
e proCoq1.NW_012149775v1     115190 1144 -   1411461 I
e canFam3.chr35            26304575 1269 +  26524999 I

a score=76190.000000
s hg38.chr6_GL000254v2_alt  1434592 7 +   4827813 aaagaca
s panTro5.chr6             30303981 7 + 175400573 aaagaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30538300 7 + 173848474 aaagaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     245407 7 +   2037526 aaagaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74912512 7 + 122973662 aaagata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30791770 7 + 172585720 aaagata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30081288 7 - 170955103 aaagata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     330610 7 +   1495729 aaagata
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     428470 7 -    863181 aaagata
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29580541 7 -  71996105 aaagata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     269737 7 -    735854 aaagata
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     218621 7 -   1829203 aaaggta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30391536 7 + 171630274 aaagata
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           215552 7 +    515838 aaagata
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     847106 7 -   1771730 aaagata
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     332874 7 -    383796 aaagata
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           263593 7 +  18854210 taagata
i otoGar3.GL873550         C 0 I 1
e micMur3.chr6               310981 1126 + 123392446 I
e mm10.chr17               58053144 1620 -  94987271 I
e dasNov3.JH580105            11870 910 -     45298 I
e proCoq1.NW_012149775v1     115190 1144 -   1411461 I
e canFam3.chr35            26304575 1269 +  26524999 I

a score=12000.000000
s hg38.chr6_GL000254v2_alt  1434599 1 +   4827813 C
s panTro5.chr6             30303988 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30538307 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     245414 1 +   2037526 C
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74912519 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30791777 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30081295 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     330617 1 +   1495729 C
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     428477 1 -    863181 C
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29580548 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     269744 1 -    735854 C
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     218628 1 -   1829203 C
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30391543 1 + 171630274 C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           215559 1 +    515838 C
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     847113 1 -   1771730 C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     332881 1 -    383796 C
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               310981 1126 + 123392446 I
e mm10.chr17               58053144 1620 -  94987271 I
e dasNov3.JH580105            11870 910 -     45298 I
e proCoq1.NW_012149775v1     115190 1144 -   1411461 I
e canFam3.chr35            26304575 1269 +  26524999 I
e otoGar3.GL873550           263600 1 +  18854210 I

a score=1243242.000000
s hg38.chr6_GL000254v2_alt  1434600 119 +   4827813 AAATGCTAGCATAGTTTTCTCTCTTTGGG-AT-GACTGCCTTATACAACTCTGGGGAATGCCATTAGCAAGTAGTGGCCTCGGATCTTCCCCCATTGCACTCTTG-CCTATTCC-ACTACTAA-
s panTro5.chr6             30303989 119 + 175400573 AAATGCTAGCATAGTTTTCTGTCTTTGGG-AT-GACTGCCTTATACAACTCTGGGGAATGCCATTAGCAAGTAGTGGCCCTGGATCTTCCCCCATTGCACTCTTG-CCTATTCC-ACTACTAA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30538308 119 + 173848474 AAATGCTAGCATAGTTTTCTGTCTTTGGG-AT-GACTGCCTTATACAACTCTGGGGAATGCCATTAGCAAGTAGTGGCCCTGGATCTTCCCCCATTGCACTCTTG-CCTATTCC-ACTACTAA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     245415 118 +   2037526 AAATGCTAGCATAGTTTTCTCTCTTTGGG-AT-GACTGCCTTATACAACTCTGGGGAATGCCATTAGCAAGTAGTGGCCTTGGATCTT-CCCCATTGCACTCTTG-CCTATTCC-ACTACTAA-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74912520 119 + 122973662 AAATCCTAGCATAGTTTTCTCTCTTTGGG-AT-GACTACCTTATACAACTCTGGGGAATGCCATTAGCAAGTGGTGGCCCTGGATCTTCCCCCATTGCACTCTTG-CCTATTCC-ACTACTAA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30791778 118 + 172585720 AAATACTAGCATAGTTTTCTCTCTTTGGG-AT-GACTGCC-TATACAACTCCGGGGAATGCCTTTAGCAAGTAGTGGCCCTGGATCTTCCCCCATTGCACTCTTG-CCTATTCC-ACTACTAA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30081296 119 - 170955103 AAATACTAGCATAGTTTTCTCTCTTTGGG-AT-GACTGCCTTATACAACTCCGGGGAATGCCTTTAGCAAGTAGTGGCCCTGGATCTTCCCCCATTGCACTCTTG-CCTATTCC-ACTACTAA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     330618 119 +   1495729 AAATACTAGCATAGTTTTCTCTCTTTGGG-AT-GACTGCCTTATACAACTCCGGGGAATGCCTTTAGCAAGTAGTGGCCCTGGATCTTCCCCCATTGCACTCTTG-CCTATTCC-ACTACTAA-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     428478 120 -    863181 AAATACTAGCATAGTTTTCTCTCTCTGGGAAT-GACTGCCTTATACAACTCCAGGGAATGCCATTAGCAAGTAGTGGCCCTGGATCTTCCCCCATTGCACTCTTG-CCTATTCC-ACTACTAA-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29580549 107 -  71996105 AAATACTAGCATAGTTTTCTCTCTTTGGG-AT-GACTGCCTTACACAACTCTGGGGAATGCCATTAGCAAGTAGTGGCCCTGGATCTTC------------CTTG-CCTATTCC-ACTACTAA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     269745 120 -    735854 AAATACTAGCATAGTTTTCTCTCTCTGGGAAT-GACTGCCTTATACAACTCCAGGGAATGCCATTAGCAAGTAGTGGCCCTGGATCTTCCCCCATTGCACTCTTG-CCTATTCC-ACTACTAA-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     218629 119 -   1829203 AAATACTAGCATAGTTTTCTCTCTTTGGG-AT-GACTGCCTTATACAACTCCGGGGAATGCCATTAGCAAGTAGTGGCCCTGGATCTTCCCCCATTGCACTCTTG-CCTATTCC-ACTACTAA-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30391544 118 + 171630274 AAATACCGGCATAGTTTTCTGTCTTTGGG-AT-GACTGCCTTCTGCAACCCCGGGGAATGCCGTTAGCAAGTAGTGGACCTGGGTCT-CCCCCATTGCACTCTTG-CTTATTCC-ACGACTAG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           215560 118 +    515838 AAATACTGGCATAGTTTTCTCTCTTTGGG-AT-GACTGCCTTATGCAACTCCAGGGAATGCCGTTAGCAAGTAGTGGCCCTGGGTCT-GCCCCATTGCACTCTTG-CTTATTCC-ACAACTAA-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     847114 118 -   1771730 AAATACTGGCATAGTTTTCTCTCTTTGGG-AT-GACTGTCTTATGCAACTCTGGGGAATGCCGTTAGCAAGTAGTGGCCCTGGGTCT-CCCCCATTGCACTCTTG-TTTATTCC-ACGACTAA-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     332882 117 -    383796 AATTCCTGGCATAGTTTTCTCTCTTTGGG-AT-GACTGCCTTATGCAACTCCGGGGAATGCCGTTAGCAAGTAGTGGCTCTGGGTCT--CCCCATTGCACTCTTG-CTTATTCC-ACGACTAA-
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         18591966 122 -  18854210 aattactgttatagttttctCTTTTCAGG-ATGGACTACCCTGTACAACTCTGGGGGATGTCATTAGTATGTGGTGGCCTTGGGTCT-CCCCCATTGCACTCTTGACTTATTCTAACTTCTCAA
i otoGar3.GL873550         n 1 C 0
e micMur3.chr6               310981 1126 + 123392446 I
e mm10.chr17               58053144 1620 -  94987271 I
e dasNov3.JH580105            11870 910 -     45298 I
e proCoq1.NW_012149775v1     115190 1144 -   1411461 I
e canFam3.chr35            26304575 1269 +  26524999 I

a score=224415.000000
s hg38.chr6_GL000254v2_alt   1434719 31 +   4827813 AACCTAAGTTTTTGCTTGCTCTAATCTCTAA
s panTro5.chr6              30304108 31 + 175400573 AACCTAAGTTTTTGCTTGCTCTAGTCTCTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30538427 31 + 173848474 AACCTAAGTTTTTGCTTGCTCTAGTCTCTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      245533 31 +   2037526 AACCTAAGTTTTCGCTTGCTCTAGTCTCTAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             74912639 31 + 122973662 AACTTAAGTTTTTGCTTGctctagtctctaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              30791896 31 + 172585720 AACTTAAGTTTTTGCTTGCTCTAGTCTCTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              30081415 31 - 170955103 AACTTAAGTTTTTGCTTGCTCTAGTCTCTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      330737 31 +   1495729 AACTTAAGTTTTTGCTTGCTCTAGTCTCTAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      428598 31 -    863181 AACTTAAGTTTTTGCTTGCTCTAGTCTCTAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29580656 31 -  71996105 AACTTAAGTTTTTGCTTGCTCTAGTCTCTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      269865 31 -    735854 AACTTAAGTTTTTGCTTGCTCTAGTCTCTAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      218748 31 -   1829203 AACTTAAGTTTTTGCTTGCTCTAGTCTCTAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             141240205 31 - 171630274 AACTTAAGATTTCACTTGCtctagtttctgc
i calJac3.chr4             n 0 I 15192
s otoGar3.GL873550          18592088 31 -  18854210 AATGGAAGATTGCACTTGCTCCAGCCCTTAA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6                310981 1126 + 123392446 I
e mm10.chr17                58053144 1620 -  94987271 I
e dasNov3.JH580105             11870 910 -     45298 I
e proCoq1.NW_012149775v1      115190 1144 -   1411461 I
e canFam3.chr35             26304575 1269 +  26524999 I
e saiBol1.JH378341            215678  0 +    515838 C
e aotNan1.NW_018496904v1      332999  0 -    383796 C
e cebCap1.NW_016107755v1      847232  0 -   1771730 C

a score=1963634.000000
s hg38.chr6_GL000254v2_alt  1434750 204 +   4827813 GTCTTCATTATTATCTTGTGCCATCTTTACTCCCAACTCATCATGCGTCAACTTTGCTTAAATTAGCCCAAAttg-ttcttgcctctaggttgat-----gcaaagctgttacctgtgcctgggatgccc-----ttctctcctctctgagcatgatgatctcttattcatctctcaggtctgcccttaaatatca---cctAGAGAGATGGGCCTT-C
s panTro5.chr6             30304139 195 + 175400573 GTCTTCATTATTATCTTGTGCCATCTTTACTCCCAACTCATCGTGCGTCAACTttgcttaaattagcccgaactg-ttcttgcctctaggttg--------------tgttacctgtgcctggaatgccc-----ttctctcctctctgagcatgatgatctcttattcatctctcaggtctgcccttaaatatca---cctagagaaatgggcctt-c
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30538458 195 + 173848474 GTCTTCATTATTATCTTGTGCCATCTTTACTCCCAACTCATCGTGCGTCAACTttgcttaaattagcccgaactg-ttcttgcctctaggttg--------------tgttacctgtgcctggaatgccc-----ttctctcctctctgagcatgatgatctcttattcatctctcaggtctgcccttaaatatca---cctagagaaatgggcctt-c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     245564 204 +   2037526 Gtcttcattattatcttgtgccatctttactcccaactcatcatgcgtcaactttgcttaaattagcccaaattg-ttcttgcctctaggttgat-----gcaaagctgttacctgtgcctggaatgccc-----ttctctcctctctgagcatgatgatctcttattgatctctcaggtctgcccttaaatatca---cctagagagatgggcctt-c
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74912670 205 + 122973662 gtcttcattattatcttgtgccatctttactcccaactcatcacacgtctacttggcttaaattagcccaaattg-ttcttgcctctaggttgat-----gcaaagctgttacctgtgcctggaatgccc-----ttctctcctctctgagcatgatgacctcttattcatctctcaggtctccccttaaatatca---cctagggagacaggccttcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30791927 209 + 172585720 GTCTTCATTATGATCTTGCGCTATCTTTACTCCCAACTCATCATGTGTCAACTttgctcaaattagcccaaattg-ttcttgcctctaggttgatgcaaagcaaagctgtta-gtgtgcctggaatgcct-----ttctttcctctctgagcatgaagatatcttattcatctctcaggtccctccttaaatatca---cctagggagatgggccttcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30081446 209 - 170955103 GTCTTCATTATGATCTTGCGCTATCTTTACTCCCAACTCATCATGTGTCAACTttgcttaaattagcccaaattg-ttcttgcctctaggttgatgcaaagcaaagctgtta-gtgtgcctggaatgcct-----ttctttcctctctgagcatgaagatatcttattcatctctcaggtccctccttaaatatca---cctagggagatgggccttcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     330768 208 +   1495729 GTCTTCATTATGATCTTGCGCTATCTTTACTCCCAACTCATCATGTGTCAACTTTGCTTAAATTAGCCCAAATTG-ttcttgcctctaggttgatgcaaagcaaagctgtta-gtgtgcctggaatgcct-----ttctttcctctctgagcatgaagatatcttattcatctctcaggtccctccttaaatatca---cctA-GGAGATGGGCCTTCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     428629 209 -    863181 GTCTTCATTATGATCTTGCGCTATCTTTACTCCCAACTCATCATGTGTCAACTttgcttaaattagcccaaattg-ttcttgcctctaggttgatgcaaagcaaagctgtta-gtatgcctggaatgcct-----ttctctcctctctgagcatgaagatctcttattcatctctcaggtccctccttaaatatca---cctagggagatgggccttcc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29580687 209 -  71996105 GTCTTCATTATGATCTTGCGCTATCTTTACTCCCAACTCATCATGTGTCAACTttgcttaaattagcccaaattg-ttcttgcctctaggttgatgcaaagcaaagctgtta-gtgtgcctggaatgcct-----ttctctcctctctgagcatgaagatctcttattcatctctcaggtccctccttaaatatca---cctagggagatgggccttcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     269896 209 -    735854 GTCTTCATTATGATCTTGCGCTATCTTTACTCCCAACTCATCATGTGTCAACTttgcttaaattagcccaaattg-ttcttgcctctaggttgatgcaaagcaaagctgtta-gtatgcctggaatgcct-----ttctctcctctctgagcatgaagatctcttattcatctcttaggtccctccttaaatatca---cctagggagatgggccttcc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     218779 205 -   1829203 GTCTTCATTATGATCTTGCGCTATCTTTACTCCCAACTCATCATGTGTCAACTTTGCTTAAATTAGCCCAAAttg-gtcttgcctctaggttggt-----gcaaagctgttacctgtgcctggaatgcct-----ttctctcctctctgagcatgaagatctcttattcatctctcaggttcctccttaaatatca---cctagggagatgggccttcc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30391662 210 + 171630274 Gtcttcattattatcttgtaccatcttcactcccagctcattatgtgccagcttcgcttaaattagcccaaattg-ttcttgcctctaggttgat-----gtaaagctattacctgtgcctggaatgcccttctcttctctcctctctgtgcatcattatctcttattcatctctcaggtctcaccttaaatatca---cttcAGAAGATGGGCCTTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           215678 208 +    515838 Gtcttcattattatctcgtaccatcttcactcccagatcattatgtgccaacttcacttaaattagccgaaattg-ttcttgcctctagtttgat-----gtaaagctatcacctgcgcctgcaatgcctttctcttctctgttctccgtgcatcatga--tcttattcatctctcaggtctcaccttaaatatca---cttcagaagatgggccttcc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     847232 210 -   1771730 Gtcttcattattatcttgtaccatcttcactcccagctcactatgtgccaacttcgcttaaattagcccaaattg-ttcttgcctctaggttgat-----gtgaagctatcacctgtgcccggaatgcccttctcttctctcctctctatgcatcatgatctcttattcatctctcaggtctcaccttaaatacca---tgtcagacgatgggccttcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     332999 210 -    383796 GTCTTCCTTATTATCTTGTACCGTcttcactcccagctcattatgtgccaacttcgcttaaattagcccaaatta-ttcttgcctctaggttgat-----gtaaagctatttcctgtgcctggaatgcccttctcttctctcctctctgtgcatcatgatctcttattcatctctcaggtctcgccttaaatatca---cttcagaagatgggccttct
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550         18592119 202 -  18854210 GTCTTCATTATTATCTTGTACCATcttta-tcccagctca---tgtgccacctttgcttaaattataccaaattgttttttgcttctgagccttt-----gtaaagctattctctctgcctggaatgtgc-----tttcctcttctctgtgaatgataaattcttattcatctctcaggaatccccttaaatgttgtgccctcaagaga--gaccttc-
i otoGar3.GL873550         C 0 n 0
e micMur3.chr6               310981 1126 + 123392446 I
e mm10.chr17               58053144 1620 -  94987271 I
e dasNov3.JH580105            11870 910 -     45298 I
e proCoq1.NW_012149775v1     115190 1144 -   1411461 I
e canFam3.chr35            26304575 1269 +  26524999 I

a score=75805.000000
s hg38.chr6_GL000254v2_alt  1434954 12 +   4827813 TCAAtgctggat
s panTro5.chr6             30304334 12 + 175400573 tcAAtgctggat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30538653 12 + 173848474 tcAAtgctggat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     245768 12 +   2037526 tcAAtgctggat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74912875 12 + 122973662 TCagtgctggat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30792136 12 + 172585720 tcaacGCTGGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30081655 12 - 170955103 tcaacGCTGGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     330976 12 +   1495729 TCAGCGCTGGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     428838 12 -    863181 TCAAtgctggat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29580896 12 -  71996105 tcaacGCTGGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     270105 12 -    735854 tcaacGCTGGAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     218984 12 -   1829203 TCAAtgctggat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30391872 12 + 171630274 TCAGTGCTGGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           215886  2 +    515838 tc----------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     847442 12 -   1771730 Tgagtgctggat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     333209  2 -    383796 tc----------
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               310981 1126 + 123392446 I
e mm10.chr17               58053144 1620 -  94987271 I
e dasNov3.JH580105            11870 910 -     45298 I
e proCoq1.NW_012149775v1     115190 1144 -   1411461 I
e canFam3.chr35            26304575 1269 +  26524999 I
e otoGar3.GL873550         18592321  0 -  18854210 I

a score=4655125.000000
s hg38.chr6_GL000254v2_alt  1434966 498 +   4827813 ggagtgctggatggagtAGATAGAGTTACAATCTCAATAGATTCTatttgagcaaagat--ttgaaggtggtaagagaagtcgtcaagtgcttatctgaaggaaggatcatccagatgaaaggaa------------aggcagaggcaaaggctgtgatgctgaagctgctgatgtgtttgagatttaacatgaggccatgtggctggagcagagggagcagcgggtgtggagtaggaagtcagagatgggactggccgactgtgcag---------------ggcttt--gtcattgtcaggacttcattcagtactgggtgaggtgag--CCTACCAGGGGTtggagtt---------------------ggtgggaaggggctgacttc-tggacgtgag---------------------ttactgcattggttgtggagtgtgagagcaaaggaggaggcaggaagctctaacgaatttggccccaccatggggaggatggagctgccagtgactgcagtgggaagaactgtgaggagctggcctgggcaggaatatcaggggtggcat
s panTro5.chr6             30304346 497 + 175400573 ggagtgctggatggagtAGATAGAGTTACAATCTCAATAGATTCTatttgagcaaagat--ttgaaggtggtaagagaagtcgtcaagtgcttatctgaaggaaggatcatccagatgaaaggaa------------aggcagaggcaaaggctgtgatgctgaagctgctgatgtgtttgagatttaacatgaggccatgtggctggagcagagggagcagcgggtgtggagtaggaagtcagagaggggactggccgactgtgcag---------------ggcttt--gtCATTgtcaggacttcattcagtactgggtgaggtgag--cctgccaggggttggagtt---------------------ggtgggaaggggctgatttc-tggacgtgag---------------------ttact-cattggttgtggagtgtgagagcaaaggaggaggcaggaagctctaacgaatttggctccaccatgggaaggatggagctgccagtgactgcagtgggaagaactgtgaggagctggcctgggcagaaagatcaggggtggcat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30538665 497 + 173848474 ggagtgctggatggagtAGATAGAGTTACAATCTCAATAGATTCTatttgagcaaagat--ttgaaggtggtaagagaagtcgtcaagtgcttatctgaaggaaggatcatccagatgaaaggaa------------aggcagaggcaaaggctgtgatgctgaagctgctgatgtgtttgagatttaacatgaggccatgtggctggagcagagggagcagcgggtgtggagtaggaagtcagagaggggactggccgactgtgcag---------------ggcttt--gtCATTgtcaggacttcattcagtactgggtgaggtgag--cctgccaggggttggagtt---------------------ggtgggaaggggctgatttc-tggacgtgag---------------------ttact-cattggttgtggagtgtgagagcaaaggaggaggcaggaagctctaacgaatttggctccaccatgggaaggatggagctgccagtgactgcagtgggaagaactgtgaggagctggcctgggcagaaagatcaggggtggcat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     245780 495 +   2037526 ggagtgctggatggagtAGATAGAGTTACAATCTCAATAGATTCTatttgagcaaagat--ttgaaggtggtaagagaagtcgtcaagagcttatctgaaggaaggatcatccagatgaaaggaa------------aggcagaggcaaaggctgtgatgctgaagctgctgatgtgtttgagatttaacatgaggccatgtggctggagcagagggagcagcgggtgtggagtaggaagtcagaga-gggactggccgactgtgcag---------------ggcctt--gtcattgtcaggacttcattcagtactgggtgaggtgag--CCTGCCAGGGGTTGGAGTT---------------------GGT-GGAAGGGGCTGATTTC-TGGACGTGAG---------------------TTACT-Cattggttgtggagtgtgagagcaaatgaggaggcaggaagctataacgaatttggccccaccatggggaggatggagctgccagtgactgcagtgggaagaactgtgaggagctggcctgggcaggaagatcagaggtggcat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74912887 498 + 122973662 ggagtgctggatggagtAGATAGAGTTACAAactcaatagattctatttgagcaaagat--ttgaaggtggtaagagaagtcgtcaagtgcttatctgaaggaagactcatccagatgaaaggaa------------aggcagaggcaaagattgtgatgctgaagctgctgatgtgtttgagatttaacatgaggccatgtggctggagcagagggagcaacgggtgtggagtaggaagtcagagaggtgactggccgactgtgcag---------------ggcctt--gtcattgtcaggactttCTTCAGTACTGggtgagttgag--cctggcaggggttggaggt---------------------agtgggaaggggctgatttc-tggacgtgag---------------------tttctgcattggttgtggagtgtgagagcaaaggaggaggcaggaagctctaatgaatttggccccatcatgggaaggatggagctgccagtgactgcagtgggaagaacggtgaggagctggcctgggcaggaagaccaggggtggcat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30792148 503 + 172585720 GGAGTGCTGGatggagtagacagagttacaatctcaatagattctatttgagcaaagat--ttgaaggtggtaagagaagtcgtcaagtgcttatctgaaggaaggatcatccagatgaaaggaa------aggcagaggcagaggcaaaggctgtggtgctgaaactgctcatgtgtttgggatttaacatgaggccatgtggctgggccagagggagcagcaggtgtggagtaggaagtcagataggcgactgaccgactgtgcag---------------ggcctt--gtcattgtcaggactttcttcggtactgggtgaggtgag--CCtggcagggattggaggt---------------------ggtgggaagggactgctttc-tgaacgtgag---------------------tttctgcattggttgtggagtgtgagagcaaaggatgaggcaggaagctctaacgagtttggccccagcacggggaggctggagctgccactgactgcagtgggaagaactgtgaggagctggcctgggcaggaggaccag-ggtggcat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30081667 503 - 170955103 GGAGTGCTGGatggagtagacagagttacaatctcaatagattctatttgagcaaagat--ttgaaggtggtaagagaagtcgtcaagtgcttatctgaaggaaggatcatccagatgaaaggaa------aggcagaggcagaggcaaaggctgtggtgctgaaactgctcatgtgtttgggatttaacatgaggccatgtggctgggccagagggagcagcaggtgtggagtaggaagtcagataggcgactgaccgactgtgcag---------------ggcctt--gtcattgtcaggactttcttcggtactgggtgaggtgag--cctggcagggattggagGT---------------------GGTGGGAAGGGACTGCTTTC-TGAACGTGAG---------------------TTTCtgcattggttgtggagtgtgagagcaaaggagggggcaggaagctctaacgagtttggccccagcacggggaggctggagctgccagtgactgcagtgggaagaactgtgaggagctggcctgggcaggaggaccag-ggtggcat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     330988 503 +   1495729 GGAGTGCTGGATGGAGTAGACAGAGTTACAATCTCAATAGATTCTatttgagcaaagat--ttgaaggtggtaagagaagtcgtcaagtgcttatctgaaggaaggatcatccagatgaaaggaa------aggcagaggcagaggcaaaggctgtggtgctgaaactgctcatgtgtttgggatttaacatgaggccatgtggctgggccagagggagcagcaggtgtggagtaggaagtcagataggcgactgaccgactgtgcag---------------ggcctt--gccattgtcaggactttcttcggtactgggtgaggtgag--CCtggcagggattggaggt---------------------ggtgggaagggactgctttc-tgaacgtgag---------------------tttctgcattggttgtggagtgtgagagcaaaggagggggcaggaagctctaacgagtttggccccagcacggggaggctggagctgccagtgactgcagtgggaagaactgtgaggagctggcctgggcaggaggaccag-ggtggcat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     428850 502 -    863181 ggagtgctggatggagtagacagagttacaatctcaatagattctatttaagcaaagat--ttgaaggtggtaagagaagtcgtcaagtgcttatctgaaggaaggatcatccagatgaaaggaa------aggcagaggcagaggcaaaggctgtggtgctgaaactgctcatgtgtttgagatttaacatgaggccatatggctgggccagagggagcagcgggtgtgcagtaggaactcagataggcgactgactgactgtgcag---------------ggcctt--gacattgtcaggactttcttcggtactgggtgaggtgag--cctggcagggattggagGT---------------------GGTGGG-AGGGACTGCTTTC-TGGACGTGAG---------------------TTTCtgcattggtcgtggagtgtgagagcaaagcaggaggcaggaagctctaacaagtttggccccagcatggggacaatggagctgccagtgactgcagtgggaagaactgtgaggagctggcctgggcaggaggaccag-ggtggcat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29580908 509 -  71996105 GGAGTGCTGGatggagtagacagagttacaatctcaatagattctatttgagcaaagat--ttgaaggtggtaagagaagtcgtcaagtgcttatctgaaggaaggatcatccagatgaaaggaaaggcagaggcagaggcagaggcaaaggctgtggtgctgaaactgctcatgtgtttgagatttaacatgaggccatgtggctgggccagagggagcagcaggtgtggagtaggaagtcagataggcgactgaccgactgtgcag---------------ggtctt--gtcattgtcaggactttcttcggtaccgggtgaggtgag--cctggcagggattagaggt---------------------gatggggagggacTGCTTTC-TGGACGTGAG---------------------TTTCtgcattggttgtggagtgtgggagcaaagcaggaggcaggaagctctaacaagtttggccccagcatggggacaatggagctgccagtgactgcagtgggaagaattgtgaggagctggcctgggcaggaggaccag-ggtggcat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     270117 507 -    735854 GGAGTGCTGGatggagtagacagagttacaatctcaatagattctatttaagcaaagat--ttgaaggtggtaagagaagtcgtcaagtgcttatctgaaggaaggatcatccagatgaaaggaaaggcagaggcagaggcagaggcaaaggctgtggtgctgaaactgctcatgtgtttgagatttaacatgaggccatgtggctgggccagagggagcagcaggtgtggagtaggaactcagataggcgactgaccgactgtgcag---------------ggcctt--gacattgtcaggactttcttcagtactgggtgaggtgag--cctggcagggattggaAGT---------------------GATGGGGAGGGACTGCTTTC-Tggacgt--g---------------------tttctgcattggttgtggagtgtgagagcaaagcaggaggcaggaagctctaacaagtttggccccagcatggggaggatggagctgccagtgattgcagtgggaagaactgtgaggagctggcctgggcaggaggaccag-ggtggcat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     218996 497 -   1829203 ggagtgctggatggagtAGACAGAGTTACAATCTCAATAGATTCTatttcagcaaagac--ttgaaggtggtaagagaagtcatcaaatgcttatctgaaggaaggatcatccagatgaaaggaa------------aggcagaggcaaaggctgtggtgctgaaactgctcatgtgtttgagatttaacatgaggccatgtggcagagccagagggagcagagggtgtggagtaggaagtcagataagcgactgaccgactgtgcag---------------ggcctt--gtcattgtcaggactttcttcggtactgggtgaagtgag--CCTGGAAggcattggaggt---------------------ggtgggaagggactgctttc-tggacgtgag---------------------tttctgcattggttgtggagtgtgagagcaaaggaggaggcaggaagctctaatgagtttggccccagcacgaggaggatggagctgccagtgactgcagtggaaagaactgtgaggagctggcctgggcaggaggaccag-ggtggcat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30391884 441 + 171630274 GAAGTGCTGGatggagtaggcagagttacaatttcaatagattctattcgagcaaagac--ttgaaggtggtaagaaaagtcatcaagtgcttacctgaaagaagaatcatccagatgaaaggaa------------aggcagaggcaaaggctgtgaagctgaagctgctgatgtgtttgggatttaacataagatcatgcggctgcagcagagggagca-taggcgtggagcaggaagtcagggaa-------------------------------------------gCCACTGTCAGGACTTCCTTCAGTACTGGGTGAGGCGAG--TCTGGCAGGCGTTGGAGGT---------------------GGTGGGAAGGGGCTGATTTC-TGGACATGAG---------------------TTTCTGCAT------CGGGGTGTGAGGGCAAAGGAGAAGGCAGGAAGCACTAACGAATTTG----------------------GCTGCCAGTGACTGCAATGGGAAGAACTGTGAGGAGCTGACCTGGGC-AGGAGGTCA-GGGTGGCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           215888 444 +    515838 --agtgctggatggagtaggcagagttacaatttcaataggttctgttcgagcaaagacttttgaaggtggtgagaaaagtcatcaagtgcttacctgaaagaaggatcatccagatgaaaggaa------------aggcagaggcaaaggctgtgaagctgaagttgctgatgtgtttgggatttaacataagtccatgcggctggagcagagggagcc-taggcgtggagcaggaagtcagagaa-------------------------------------------gtcacTGTCAGGACTTTCTTCAGTACTGGGTGAGCTGAGTCTCTGGCAGGGATTGGATGT---------------------GGTAGGAAGGGGCTGATTTC-TGAACACAAG---------------------TTTCTGCAT------tggggtgtgagggcaaaggagaaggcaggaagcactaacgaatttg----------------------gctgccagtgactgcaatgggaagaactgtgaggagctggcctggca-gggagatcaggggtggcat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     847454 443 -   1771730 gaagtgctggatggagtaggcagagttacaatttcattagattctattcgagcaaagac--ttgaaggtggtaagaaaagtcatcaagtgcttacctgaaagaaggatcatccagatgaaaggaa------------aggcaggggcaaaggctgtgaagctgaagctgccgatgtgtttgggatttaacataaggccatgctgctggagcagagggagca-taggcgtggagcaggaagtcagagaa-------------------------------------------gtcactggCAGGACTTTCTTCAGTACTGGCTGAGGTGAG--TCtggcaggggttggaggt---------------------ggtgggaagggtttgatttc-tggacatgag---------------------tttctgcat------tggggcgagagggcaaaggagaaggcaagaagcactaacgaatttg----------------------gctgccagtgactgcaatgggaagaactgtgaggagctggcctgggcaagaaggtcaggggtggcat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     333211 441 -    383796 --agtgctggatggagtaggcagagttacaatttcaatagattctattcgagcaaagac--ttgaaggtggtaagaaaagtcatcaagtgcttacctgaaagaaggatcatccagatgaaaggag------------aggcggaggcaaagactgtgaagctgaagctgctggtgtgtttgggatttaacgtaaggccatgcggctggagcagagggaaca-taggcgtggagtgggaagtcagagaa-------------------------------------------gtcactgtcaggactttcttcagtactgggtgaggtgag--tctggcaggggttggaggt---------------------ggtgggaaggggctgatttc-tggacatgag---------------------tttctgcat------tggggtgtgagggcaaaggagaaggcaggaagcactaacgaatttg----------------------gctgccagtgactacagtgggaagaactgtgaggagctggcctgggcaggaaggtcaggagtggcat
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           263601 495 +  18854210 ggaggactaggtaaggtaggcagag-------------aga----atttgagcaaaaat--ttaaa---ggtaagagaattagtcaagtgcttatctggaggaagagtggtccagatggaggcaa------------aggtagagacaaaggccctgaagctg-----------------------tagcataaga--------------------ggtcagcgggagaggagtatggagccagagaggggacgggcaggctgagggggtgggggtgggtggtggTCCTAGGTCACTGTAAGGACTTTCTTTAGTGCTAGTGgaggtgag--cctagtagggcttggaacctagtggaggtgagcctagtagggtaggaaggggctgagttcaagggcatgagctgatggagagctgagtggatttgctgctggactggtgggatgtgagtgcagaagagaagtcatgaagctctaagggatttggccccagtgctgggaggacagagctgccagtgactgaggtggggaaggctgtcaggggctggctcgggtggggagatgaggagttatgt
i otoGar3.GL873550         I 1 C 0
e micMur3.chr6               310981 1126 + 123392446 I
e mm10.chr17               58053144 1620 -  94987271 I
e dasNov3.JH580105            11870 910 -     45298 I
e proCoq1.NW_012149775v1     115190 1144 -   1411461 I
e canFam3.chr35            26304575 1269 +  26524999 I

a score=2327085.000000
s hg38.chr6_GL000254v2_alt  1435464 222 +   4827813 gttggacatgtgaagccaggaggcctgtgggccat-ccaaCAGTGCTGTGAACTGTGCAGCCCGATGTAAGCATATCTGACATTAGGAGTGGTGG-AGAAACAAAAAGAACAAGGATAGTTCATTTTAACACAGTAATAATTTTATAATTTTATAATTTT--------CAAATCATT-AAAGATTTTACTACTTTCTTAACTACTCCAGGAGCCTGTGTCACATTCCAGTCAC
s panTro5.chr6             30304843 230 + 175400573 gttggacatgtgaagccaggaggcctgtgggccat-ccaacagcgctgtgaactgtgcagcccaatgtaagcatatctgacattaggagtggtgg-agaaacaaaAAGAACAAGGATAGTTCATTTTAACACAGTAataattttataattttataattttataattttCAAATCATC-AAAGATTTTACTACTTTCTTAACTACTCCGGGAGCCTGTGTCACATTCCAGTCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30539162 230 + 173848474 gttggacatgtgaagccaggaggcctgtgggccat-ccaacagcgctgtgaactgtgcagcccaatgtaagcatatctgacattaggagtggtgg-agaaacaaaAAGAACAAGGATAGTTCATTTAAACACAGTAataattttataattttataattttataattttCAAATCATC-AAAGATTTTACTACTTTCTTAACTACTCCCGGAGCCTGTGTCACATTCCAGTCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     246275 222 +   2037526 gttggacatgtgaagccagtaggcctgtgggccat-ccaacagcgctgtgaactgtgcagcccaatgtaagcatatctgacattaggagtggtgg-agaaacaaaAAGAACAAGGATAGTTCATTTTAACACAGTAATAATTTTATAATTTTATAATTTT--------CAAATCATT-AAAGATTTTACTACTTTCTTAACTACTCCGGGAGCCTGTGTCACATTCCAGTCAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74913385 222 + 122973662 gttggacatgtgaagccaggaggcctgtgggccat-ccaaCAGCGCTGTGAACTGTGCAGCCCAATGTAAGCATATCTGACATTAGGAGTGGTGG-AAAAACAAAAAGAACAAGGATAGTTCATATTAACACAGTAATAATTTTGTAATTTTATAATTTT--------CAAATCATT-AAAGATTTTACTACTTTCTTAACTACTCCAGGAGCCTGTGTCACATTCCAGTCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30792651 222 + 172585720 gttggacatgtgaagccaggaggcctgtgggccat-ccaacagcgctgtgaactatgcagcccaatgtaagcatatctgaaattaggagtggtgg-agaaataaaAAGAACAAGGATAGTTCATATTAACACAGTAATAATTTTGTAATTTTATAATTTT--------CAAATCATT-AAAGATTTTACTACTTTCTTAACTACTCCAGGAGCTTGTGTCACATTCCAGTCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30082170 222 - 170955103 gttggacatgtgaagccaggaggcctgtgggccat-ccaacagcgctgtgaactatgcagcccaatgtaagcatatctgaaattaggagtggtgg-agaaataaaAAGAACAAGGATAGTTCATATTAACACAGTAATAATTTTGTAATTTTATAATTTT--------CAAATCATT-AAAGATTTTACTACTTTCTTAACTACTCCAGGAGCTTGTGTCACATTCCAGTCAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     331491 222 +   1495729 gttggacatgggaagccaggaggcctgtgggccat-cccacagcgctgtgaactatgcagcccaatgtaagcatatctgaaattaggagtggtGG-AGAAACAAAAAGAACAAGGATAGTTCATATTAACACAGTAATAATTTTGTAATTTTATAATTTT--------CAAATCATT-AAAGATTTTACTACTTTCTTAACTACTCCAGGAGCTTGTGTCACATTCCAGTCAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     429352 221 -    863181 gttggacatgtgaagccaggaggcctgtgggccat-ccaacagcgctgtgaactatgcagcccaatgtaagcatatctgaaatgaggagtggtgg-agaaacaaaAAGAACAAGGATAGTTCATATTAACACAGTAATAATTTTGTAATTTTATAATTTT--------CAAATCATT-AAAGATTTTACTACTTTCTTAACTACTCCAGGAGCTTGTGTCACATTCCA-TCAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29581417 222 -  71996105 gttggacatgtgaagccaggaggcctgtgggccat-ccaacagcgctgtgaactatgcagcccaatgtaagcgtatctgaaattaggagTGGTGG-AGAAACAAAAAGAACAAGGATAGTTCATATTAACACAGTAATAATTTTGTAATTTTATAATTTT--------CAAAACATT-AAAGATTTTACTACTTTCTTAACTACTCCAGGAGCTTGTGTCACATTCCAGTCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     270624 222 -    735854 gttggacatgtgaagccaggaggcctgtgggccat-ccaacagcgctgtgaactatgcagcccaatggaagcatatctgaaattaggagtggtgg-agaaacaaaAAGAACAAGGATAGTTCATATTAACACAGTAATAATTTTGCAATTTTATAATTTT--------CAAAACATT-AAAGATTTTACTACTTTCTTAACTACTCCAGGAGCTTGTGTCACATTCCAGTCAC
i manLeu1.NW_012107142v1   C 0 I 1287
s colAng1.NW_012115577v1     219493 222 -   1829203 gttggacatgtgaagccaggaggcctgtgggccat-gcaacagcgctgtgaactatgcagcccaatgtaagcatatctgaaattaggagtggtGG-AGAAACAAAAAGAACAAGGATAGTTCATATTAACACAGTAATAATTTTGTAATTTTATAATTTT--------CAAATCATT-AAAGATTTTACCACTTTCTTAACTACTCCAGGAGCTTGTGTCACATTCCAGTCAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30392325 220 + 171630274 GTTGGACGTGTGAAGCCAGGAGGCCTGTTGGCCAT-CCAGCAGCGCTGTGAACTGTGCAGCCCAGTGCAAGCGAATCTGACATTAGGAGTGGTTGCAGAAAGAGAAAGAACAAGAATAGTTCATATTAACACAACAATAATTTTGTAATTTTTTAA-TTT--------CAAATCGTT--AGGATTTTAC-ACTTTCTTAACTCCTCCAGGAGCCTGTGTCACTTTCCAGGCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           216332 221 +    515838 gttggacgtgtgaagtcaggaggcccgttggccat-ccagcagtgCTGTGAACTGTGCAGACCAGTGCAAGTGAATCTGACATTAGGAGTGGTGGCAGAAACAGAAAGAACAAGAATAGTTCATATTAACACAACAATAATTTTGTAATTTTGTAA-TTT--------CAAATCCTT-AAGGATTTGAC-ACTTTCTTAGCTCCTCCAGGAGCCTGTGTCACGTTCCAGGCAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     847897 221 -   1771730 gttggacgtgtgaagccaggaggcctgttggccat-ccagcagcgctgtgaactgtgcagcccagtgcaagcgaatctgacattaggagtggtGGCAGAAGCAGAAAGAACAAGAATAGTTCATATTAACACAACAATAATTTTGTAATTTTGTAA-TTT--------CAAATCGTT-AAGGATTTTAC-ACTTTCTTAGCTCCTCCAGGAGCCTGTGTCACATTCCAGTCAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     333652 219 -    383796 gttggacgtgtgaagccaggaggcctgttggccat-ccagcagcgctgtgaactgtgcagcccagtgcaagcgaatctgacattaggagtggtggcagaaatagaaaG---AAGAATAGTTTATATTAACACAACAATAATTTTGTAATTTTATAATTTT--------CAAATCGTT-AAAAATTTTAC-AGTTTCTTAGCTCCTCCAGGAGCCTCTGTCACGTTCCAGTCAC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           264096 198 +  18854210 gttggacgggtgaagccaagctgcctgttggccatcccaacagca-tgtggactgtgcagCCCTACATGAGCATA--TGACATTGGGAGTGGCCGCAGAACCAAAAAGAGCAGGAAAAGTACAAATTAACATAGCAG------------TTTATAAGTCT--------CAAATCTTTTAAAAATTTCACTGCTCTCTTAACTAGTTCAGGAGAGTTTGTAA------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58054764 178 -  94987271 GCTGGATGTGTGAATCCGG---GTTTGTCTGTCAT--------------GAACTGTGCAGCCCTGGATAAGCATA--TGGCATTATGGGTGGTGG-TGAAACTAAA---------ATAATCCCTATTAACA-----------TTAGCCATTTGTAATTTT--------CATGTATTT------CTTTCCTGCTCTCTTACCTGGTTCACAAGAGTCTA-CACATCTCCTTTAT
i mm10.chr17               I 1620 C 0
e micMur3.chr6               310981 1126 + 123392446 I
e dasNov3.JH580105            11870 910 -     45298 I
e proCoq1.NW_012149775v1     115190 1144 -   1411461 I
e canFam3.chr35            26304575 1269 +  26524999 I

a score=279736.000000
s hg38.chr6_GL000254v2_alt  1435686 23 +   4827813 AGGGAGGAAACTGGGGGCCATGC
s panTro5.chr6             30305073 23 + 175400573 AGGGAGGAAACTGGGGGTCATGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30539392 23 + 173848474 AGGGAGGAAACTGGGGGCCATGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     246497 21 +   2037526 --GGAGGAAACTGGGGGCCATGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74913607 23 + 122973662 AGGGAGGAAACTGGGGGCCATGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30792873 23 + 172585720 AGGGAGGAAACTGGGGGCCATGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30082392 23 - 170955103 AGGGAGAAAACTGGGGGCCATGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     331713 23 +   1495729 AGAGAGGAAACTGGGGGCCATGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     429573 23 -    863181 AGGGAGGAAACTGGGGGCCATGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29581639 23 -  71996105 AGGGAGGAAACTGGGGGCCATGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     272133 23 -    735854 AGGGAGGAAACTGGGGGCCATGC
i manLeu1.NW_012107142v1   I 1287 C 0
s colAng1.NW_012115577v1     219715 23 -   1829203 AGGGAGGAAACTGGGGGCCATGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30392545 23 + 171630274 AGGGAGGAAACTGGGGGCCATGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           216553 23 +    515838 AGGGAGGAGACTGGGGCCCATGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     848118 23 -   1771730 AGGGAGGAAACTGGGGGCCATGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     333871 23 -    383796 AGGGAGGAAACTGGGGCCCATGC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           264294 19 +  18854210 ----aggaaactgggggccatgg
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58054942 23 -  94987271 TGTAAGGAACCTGGAGGGCTGGC
i mm10.chr17               C 0 C 0
e micMur3.chr6               310981 1126 + 123392446 I
e dasNov3.JH580105            11870 910 -     45298 I
e proCoq1.NW_012149775v1     115190 1144 -   1411461 I
e canFam3.chr35            26304575 1269 +  26524999 I

a score=2055383.000000
s hg38.chr6_GL000254v2_alt  1435709 196 +   4827813 AGGATA----------------------AAGGTCAAAGCCTGC-----------ATGCTGGG----ACTCA---------AGTGCTTCCT-C-CCCA-ACAGTATTA------GAA-------CACCAACTCCCAGGAGCACAGAGACTTGAAGAGAGTGTCCGGGTCGTGGACTATGAGTCAGAGAAACCAAGCCAGGGGCATGCAAGGCAGCACGAGGCAGAGCAGGGAAACCCAGCAAG-GGAGGTGGCAACGCAC
s panTro5.chr6             30305096 196 + 175400573 AGGATA----------------------AAGGTCAAAGCCTGT-----------ATGCTGGG----ACTCA---------AGTGCTTCCT-C-CCCA-ACAGTATTA------GAA-------CACCAACTCCCAGGAACACAGAGACTTGAAGAGAGTGTCCGGGTCGTGGACTATGAGTCAGAGAAACCAAGCCAGGGGCATGCAAGGCAGCACGAGGCAGAGCAGGGGAACCCAGCAAG-GGAGGTGGCAACGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30539415 196 + 173848474 AGGATA----------------------AAGGTCAAAGCCTGC-----------ATGCTGGG----ACTCA---------AGTGCTTCCT-C-CCCA-ACAGTATTA------GAA-------CACCAACTCCCAGGAACACAGAGACTTGAAGAGAGTGTCCGGGTCGTGGACTATGAGTCAGAGAAACCAAGCCAGGGGCATGCAAGGCAGCACGAGGCAGAGCAAGGGAACCCAGCAAG-GGAGGTGGCAACGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     246518 196 +   2037526 AGGATA----------------------AAGGTCAAAGCCTGC-----------ATGCTGGG----ACTCA---------AGTGCTTCCT-C-CCCA-ACAGTATTA------GAA-------CACCAAGTCCCAGGAACACAGAGACTTGAAGAGAGTGTCCGGGTCGTGGACTGTGAGTCAGAGAAACCAAGCCAGGGGCATGCAAGGCAGCATGAGGCAGAGCAGGGGAACCCGGCAAG-GGAGGTGGCAATGCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74913630 194 + 122973662 AGGATG----------------------AAGGTCAAAGCCTGC-----------ATGCTGGG----ACTCA---------AGTGCTTCTT-C-CCCA-ACAGTGTTA------GAG-------CACCAACTCCCAGGAACACAGAGACTTGA--AGAGTGTCCGGGTCATAGACTATGAGTCAGAGAAACCAAGCCAGGGGCATGCAAGGCAGCACGAGGCAGAGCAGGGGAACCCAGCAAG-GGAGGTGGCAACACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30792896 196 + 172585720 AGGGTA----------------------AAGGTCAAAGCCTGC-----------ATGCTGGG----ACTCA---------AGTGCTTCTT-C-CCCA-GCAGTGTTA------GAG-------CACCGACTCCCATGAACACAGAGACTTGAAGAGAGTGTCTGGGTCGTGGACTGTGAGTCAGAGAAACCAAGCCAGGGGCATGCAAGGCAGCACAAGGCAGAGCAGGGGAACCCAGCAAG-GGAGGTGGCAACACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30082415 196 - 170955103 AGGGTA----------------------AAGGTCAAAGCCTGC-----------ATGCTGGG----ACTCA---------AGTGCTTCTT-C-CCCA-GCAGTGTTA------GAG-------CACCGACTCTCAGGAACACAGAGACTTGAAGAGAGTGTCTGGGTCGTGGACTGTGAGTCAGAGAAACCAAGCCAGGGGCATGCAAGGCAGCACAAGGCAGAGCAGGGGAACCCAGCAAG-GGAGGCGGCAACACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     331736 196 +   1495729 AGGGTA----------------------AAGGTCAAAGCCTGC-----------ATGCTGGG----ACTCA---------AGTGCTTCTT-C-CCCA-GCAGTGTTA------GAG-------CACCGACTCTCAGGAACACAGAGACTTGAAGAGAGTGTCTGGGTCGTGGACTGTGAGTCAGAGAAACCAAGCCAGGGGCATGCAAGGCAGCACAAGGCAGAGCAGGGGAACCCAGCAAG-GGAGGCGGCAACACAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     429596 195 -    863181 AGGGTA----------------------AAGGTCAAAGCCTGC-----------ATGCTGGG----ACTCA---------AGTGCTTCTT-C-CCCA-GCAGTGTTA------GAG-------CACCGACTCTCAGGAACACAGA-ACTTGAAGAGAGTGTCTGGGTCCTGGACTGTGAGTCAGAGAAACCAAGCCAGGGGCATGCAAGGCAGCACAAGGCAGAGCAGGGGAACCCAGCAAG-GGAGGCGGCAACACAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29581662 196 -  71996105 AGGGTA----------------------AAGGTCAAAGCCTGC-----------ATGCTGGG----ACTCA---------AGTGCTTCTT-C-CCCA-GCAGTGTTA------GAG-------CACCGACTCCCAGGAACACAGAGACTTGAAGAGAGTGTCTGGGTCATGGACTGTGAGTCAGAGAAACCAAGCCAGGGGCATGCAAGGCAGCACAAGGCAGAGCAGGGGAACGTAGCAAG-GGAGGCGGCAACACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     272156 196 -    735854 AGGGTA----------------------AAGGTCAAAGCCTGC-----------ATGCTGGG----ACTCA---------AGTGCTTCTT-C-CCCA-GCAGTGTTA------GAG-------CACCGACTCCCAGGAACACAGAGACTTGAAAAGAGTGTCTGGGTCGTGGACTGTGAGTCAGAGAAACCAAGCCAGGGGCATGCAAGGCAGCACAAGGCAGAGCAGGGGAACCCAGCAAG-GGAGGCGGCAACACAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     219738 196 -   1829203 AGGGTA----------------------AAGGTCAAAGCCTAC-----------ATGCTGGG----ACTCA---------AGTGCTTCTT-C-CCCA-ACAGTGTTA------GAG-------CACTGACTCCCAGGAACACAGAGACTTGAAGAGAGTGTCTGGGTCATGGACTGTGAGTCACAGAAACCAAGCCAGGGGCATGCAAGGCAGCACAAGGCAGAGCAGGAGAACCCAGCAAG-GGAGGCGGCAATGCAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30392568 190 + 171630274 AGGATG----------------------CAGGTCAAAG-CTGC-----------ATGCTGGG----CCTCA---------AATGTTTCTT-C-CCCA-ACAGTGTCA------GAG-------CCCCGACTGCCAGGGACGCAGAGACATGAGGAGAGTGACCGGGACTTGGTCTGTGAGTCAGAGAAACCAAGCCAGAGGCATGAAAGGCAGCTCAAGGCAGAGCAGGGGAACCCAGCGAG-GGAGGCA-----GCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           216576 195 +    515838 AGGATG----------------------GAGGTCAAAG-CTGC-----------CTGCTGGG----CCTCA---------AGTGCTTCTT-C-CCCA-ACAGTGTCA------GAG-------CCCCGACTGCCAGGGAGGCAGGGACATGAGGAGAGTGTCCGGGACGTGGACTGTGAGTCAGAGAAACCAAGCCAGAGGCGTGAAAGGCAGCACAAGGCAGAGCAGGGGAACCCAGCGAG-GGAGGCAGCAACGCAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     848141 195 -   1771730 AGAATG----------------------CAGATCAAAG-CTGC-----------ATGCTGGG----CCTCA---------AGTGCTTCTT-C-CCCA-ACAGTGGCA------GAG-------CCCCGACTGCCAGGGACGCAGAGACATGAGGAGAGTGACCCGGACGAGGACTGTGAGTCAGAGAAACCAAGCCAGAGGCATGAAAGGCAGCACACGGCAGAGCAGGGGAACCCAGCGAG-GGAGGCAGCAACGCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     333894 192 -    383796 AGGA-G----------------------CAGGTCAAAG-CTGC-----------ATGCTGGG----CCTCA---------AGTGCTTCTT-C-CCCA-ACAGTGTCA------GAG-------CCCCGACTGCCAGGGACACGGAGACATGAGGAGAGTGTCCGGGATGTGGACTGTGAGTCAGAGAAACCAAGCCAGAGGCATGAAAGGCAGCACAGGGCAGAGCAGGGGAACCCAGCGAG-GGAGGCAGCAACGC--
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           264313 226 +  18854210 agggtaagtggctggcctgc------ccaaggtcaaagtctgcaataggggcagaggcagggctgaaccca---------agtgctccctcc-ccca-acaatgttA------GAA-------CCCTGACTCCAAAGGACACAGACAC--AAAGAGAATGTCTGGGACGTGGACTATGAGTCAAAGAACCCAAGTTTGAGACATGAAAGACAGCATGAGGCAAAGCAGTGGGACCTGGGGAG-GGAGGCAGCAACACAG
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               58054965 209 -  94987271 AGAATAGGAAGTTCATTTGCACACCATCAGAGTCAATGTCAGC-----------CT-TAGGG----ACACAGCAGACAGTAGTGCTCCTG-CTCCCC-ATAATGTTAAACCTTGAC-------TCCTGACTCCCAGGGATATAATGACTCAAACAA-----CAGGGACATGGGCAGTGAGTCAGAAA--------------CATGAAAGA-AACGTGAAGCAGAGAAGG-----CTGGCTGGCGAAAGAGACAACACAG
i mm10.chr17               C 0 I 2
s dasNov3.JH580105            12780 162 -     45298 AGGCCA----------------------AGGGGCAGAGCCCCC-----------CTACGGGG--------A---------GCTTCTCCCC-A-CCCACACAGTGTGG------GAGCCCAGGCCCCTGGCTCCTGGGGACCCAGAGACACAAGGAGGGTGTGGGGTGC---GACAGTGAGTCAGAGAGGT--------GGACGCGGGGAGCAGCTCCAGCC-------GGCAGCCCAG---------------------
i dasNov3.JH580105         I 910 C 0
e micMur3.chr6               310981 1126 + 123392446 I
e proCoq1.NW_012149775v1     115190 1144 -   1411461 I
e canFam3.chr35            26304575 1269 +  26524999 I

a score=328180.000000
s hg38.chr6_GL000254v2_alt  1435905 21 +   4827813 AGTGACCTAGAAAAGCCTGAT
s panTro5.chr6             30305292 21 + 175400573 AGTGACCTAGAAAAGCCTGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30539611 21 + 173848474 AGTGACCTAGAAAAGCCTGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     246714 21 +   2037526 AGTGACCTAGAAAAGCCTGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74913824 21 + 122973662 AGTGACCTAGAAAAGCCTGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30793092 21 + 172585720 AGTGACCTAGAAAAGCCTGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30082611 21 - 170955103 AGTGACCTAGAAAAGCCTGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     331932 21 +   1495729 AGTGACCTAGAAAAGCCTGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     429791 21 -    863181 AGTGACCTAGAAAAGCCTGAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29581858 21 -  71996105 AGTGACCTAGAAAAGCCTGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     272352 21 -    735854 AGTGACCTAGAAAAGCCTGAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     219934 21 -   1829203 AGTGACCTAGAAAAGCCTGAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30392758 21 + 171630274 AGTGACCTAGAAAAGCCTGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           216771 21 +    515838 AGTGACCTAGAAAAGCCTGAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     848336 21 -   1771730 AGTGACCTAGAAAAGCCTGAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     334086 21 -    383796 AGTGACCTAGAAAAGCCTGAC
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     116334 21 -   1411461 AGTGACCTAGAAAAGCCTGAG
i proCoq1.NW_012149775v1   I 1144 C 0
s otoGar3.GL873550           264541 21 +  18854210 AGTGACCTAGAAAAGCCGGAT
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               58055176 21 -  94987271 AGTGACCTAGGAAAGCCTCTT
i mm10.chr17               I 2 C 0
s dasNov3.JH580105            12942 17 -     45298 AGCGACCTAGAAAGCCC----
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               310981 1126 + 123392446 I
e canFam3.chr35            26304575 1269 +  26524999 I

a score=311671.000000
s hg38.chr6_GL000254v2_alt  1435926 26 +   4827813 GAGCTGAGAGCCAGC-CGACAACAGGC
s panTro5.chr6             30305313 26 + 175400573 GAGCTGAGAGCCAGC-CGACAACAGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30539632 26 + 173848474 GAGCTGAGAGCCAGC-CGACAACAGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     246735 26 +   2037526 GAGCTGAGAGCCAGC-CGACAACAGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74913845 26 + 122973662 GAGCTGAGAGCCAGC-CGACAGCAGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30793113 26 + 172585720 GAACTGAGAGCCAGC-CCACAGCAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30082632 26 - 170955103 GAACTGAGAGCCAGC-CCACAGCAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     331953 26 +   1495729 GAACTGAGAGCCAGC-CCACAGCAGTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     429812 26 -    863181 GAACTGAGAGCCAGC-CCACAGCAGTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29581879 26 -  71996105 GAACTGAGAGCCAGC-CCACAGCAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     272373 26 -    735854 GAACTGAGAGCCAGC-CCACAGCAGTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     219955 26 -   1829203 GAACCGAGAGCCAGC-CGACAGCAGTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30392779 26 + 171630274 AAGCTGAGAGCCAGC-CGACAGCAGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           216792 26 +    515838 GAGCTGAGAGCCAGC-TGACAGCAGAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     848357 26 -   1771730 GAGCTGACAGCCAGC-CGACAGCAGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     334107 26 -    383796 GAGCTGAGAGCCAGC-CGACAGCAGGC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               312107 26 + 123392446 GAGCTGAGAGCGAGC-TGGCAGCACGC
i micMur3.chr6             I 1126 C 0
s proCoq1.NW_012149775v1     116355 26 -   1411461 GAGCTGAGAGCGAGC-TGACAGCACAC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           264562 15 +  18854210 -----------GAGC-TGACAGCAAGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58055197 18 -  94987271 GAGCTGAGAGTCAGT-CTA--------
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            12959 15 -     45298 ------------AGCACGGCCACATgc
i dasNov3.JH580105         C 0 C 0
e canFam3.chr35            26304575 1269 +  26524999 I

a score=2667334.000000
s hg38.chr6_GL000254v2_alt  1435952 163 +   4827813 CCCATGTGCCTCTGTGTCTTGGTCCACATGATAGACTctccctccctc----ccttccttcctctcctcTGGTGACCAGTAGCTAAAACATCACTGGCACGCTGCTGGCATC-----------CAGCCTGCCAATTAGTTCAGGAGCCACTCCCTCTGACTGC-CTCCTGAGCCTCAGA
s panTro5.chr6             30305339 163 + 175400573 CCCATGTGCCTCTGTGTCTTGGTCCACATGATAGACTctccctccctc----ccttccttcctctcctcTGGTGACCAGTAGCTAAAACATCACTGGCACGCTGCTGGCATC-----------CAGCTTGCCAATTAGTTCAGGAGCCACTCCCTCTGACTGC-CTCCTGAGCCTCAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30539658 163 + 173848474 CCCATGTGCCTCTGTGTCTTGGTCCACATGATAGACTctccctccctc----ccttccttcctctcctcTGGTGACCAGTAGCTAAAACATCACTGGCACGCTGCTGGCATC-----------CAGCTTGCCAATTAGTTCAGGAGCCACTCCCTCTGACTGC-CTCCTGAGCCTCAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     246761 163 +   2037526 CCCATGTGCCTCTGTGTCTTGGTCCACATGATAGACTctccctccctc----ccttccttcctctcctcTGGTGACCAGTAGCTAAAACATCACTGGCACGCTGCTGGCATC-----------CAGCCTGCCAATTAGTTCAGGAGCCACTCCCTCTGACTGC-CTCCTGAGCCTCAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74913871 163 + 122973662 CCCATGTGCCTCTGTGTCTTGGTCCACATGACAGACTctccctccctc----ccttccttcctctcctcTGGTGACCAGTAGCTAAAACATCACCGGCACGCTACTGGCATC-----------CAGCCTGCCAATTAGTTCAGGAGCCACTCCCTCTGACTGC-CTCCTGAGCCTCAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30793139 163 + 172585720 CCCATGTGCCTCTGCGTCTTGGTCCACATGACAGACTctccctccctt----ccttccttcctctcctcTGGTGACCAGTAGCCAAAACATCACCGGCACGCTGCTGGCATC-----------CAGCCTGCCAATTAGTTCAGGGGCCACTCCCTCTGACTGC-CTCCTGAGCCTCAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30082658 163 - 170955103 CCCATGTGCCTCTGCGTCTTGGTCCACATGACAGACTctccctccctt----ccttccttcctctcctCTGGTGACCAGTAGCCAAAACATCACCGGCACGCTGCTGGCATC-----------CAGCCTGCCAATTAGTTCAGGGGCCACTCCCTCTGACTGC-CTCCTGAGCCTCAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     331979 163 +   1495729 CCCATGTGCCTCTGCGTCTTGGTCCACATGACAGACTctccctccctt----ccttccttcctctcctcTGGTGACCAGTAGCCAAAACATCACCGGCACGCTGCTGGCATC-----------CAGCCTGCCAATTAGTTCAGGAGCCACTCCCTCTGACTGC-CTCCTGAGCCTCAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     429838 163 -    863181 CCCATGTGCCTCTGCGTCTTGGTCCACATGACAGACTctccctccctt----ccttccttcctctcctCTGGTGACCAGTAGCCAAAACATCACCGGCACGCTGCTGGCATC-----------CAGCCTGCCAATTAGTTCAGGAGCCACTCCCTCTGACTGC-CTCCTGAGCCTCAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29581905 163 -  71996105 CCCATGTGCCTCTGCGTCTTGGTCCACATGACAGACTctccctccctt----ccttccttcctctccCCTGGTGACCAGTAGCCAAAACATCACCGGCACGCTGCTGGCATC-----------CAGCCTGCCAATTAGTTCAGGAGCCACTCCCTCTGACTGC-CTCCTGAGCCTCAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     272399 163 -    735854 CCCATGTACCTCTGCGTCTTGGTCCACATGACAGACTctccctccctt----ccttccttcctctcctCTGGTGACCAGTAGCCAAAACATCACCAGCACGCTGCTGGCATC-----------CAGCCTGCCAATTAGTTCAGGAACCACTCCCTCTGACTGC-CTCCTGAGCCTCAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     219981 163 -   1829203 CCCATGTGCCTCTGCGTCTTGGTCCACATGACAGACTctccctccctt----ccttccttcctctcctCTGGTGACCAGTAGCCAAAACATCACCGGCACGCTGCTGGCATC-----------CAGCCTGCCAATTAGTTCAGGAGCCACTCCCTCTGACTGC-CTCCTGAGCCTCAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30392805 163 + 171630274 CCCATGTGCCTCTGGGTCTTGGCCCACATGACAGACTCTCCCTCCCTC----CCTTCCTTCCTCTCCTCTGGTGACCAGTCGCCAAAACATCACCGGCACGCTGCTGGCATC-----------CAGCCTGCCAATTAGTTCAGGAGCCACTCCCTCTGACTGC-CTCCTGAGCCTCAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           216818 163 +    515838 CCCGTGTGCCTCTGGGTCTTGGCCCACATGACAGACTGTCCCTCCCTC----CCTTCCTTCCTCTCCTCTGGTGACCAGTCACCAAAACATCACCGGCACGCTGCTGGCATC-----------CAGCCTGCCAATTAGTTCAGGAGCCACTCCCTCTGACTGC-CTCCTGAGCCTCAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     848383 163 -   1771730 CCCATGTGCCTCTGGGTCTTGGCCCACATGACAGACTctccctccctc----ccttccttcctctcctcTGGTGACCAGTCGCCAAAACATCACCGGCACGCTGCTGGCATC-----------CAGCCTGCCAATTAGTTCAGGAGCCACTCCCTCTGACTGC-CTCCTGAGCCTCAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     334133 167 -    383796 CCCATGTGCCTCTGGGTCTTGGCCCACATGACAGACTctccctccctcccttccttccttcctctcctCTGGTGACCAGTCGCCAAAACATCACCGGCACGCTGCTGGCATC-----------CAGCCTGCCAATTAGTTCAGGAGCCACTCCCTCTGACTGC-CTCCTGAGCCTCAGA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               312133 161 + 123392446 CCCAGCTGCCTCTGGGTCCTGG-CCCCACGACAGACTctccctccctc----ccttccttcctcctctcAG-TGACCGGTCGCCTAAACATCGCTGGCACGCGGCTGGCACC-----------CAGCCTGCCAATTAGCTCAGGAGCCTCTCCCTCTGACTCC-CTCCTGGGCCCCAGA
i micMur3.chr6             C 0 I 406
s proCoq1.NW_012149775v1     116381 161 -   1411461 CCCAGCTGCCTCTGGGTCCTGG-CCACATGACAGACTctccctccctc----ccttccttcctcTTCTCCGATGACCTGTCGCCAAAACATCACTGGCATGCTGCTGGCACC-----------CAGCCTGCCAATTAGGTCAGGAGCCTCTCCCT-TGACTTC-CTCCTGGGCCTCAGA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           264577 157 +  18854210 TCAAG-TGCCTCTGCGTCCTGG-CCACATGACAGA----CCCTCCCTC----CCTTCCTTCCTTTTCTGTGGTGACAAGTCACCAAAACATCACTGGCATGCTGCTGGCATC-----------CAGCCTGCCAATTAGTTCAGGAGCCTCTCCCTCTGACTTC-CTCCTGAACCTAAGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58055215 160 -  94987271 TCTATGTGCTTCTGGGTCTTGGCCCAAAGAACCAACTCTCCCTCCCT-----CTTTCCTTCCTCTTCCCTGATGACTTGTCACCAAAGTATCACAGGCATGCTGTTGGCAGC-----------CAGCCTGGCAATTAGTTCAGGAGCCTCTCCCTTTGACTTC-CTCTAGAGTCAAG--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26305844 144 +  26524999 CCCACGTACCCCTGCGTCGGG------------------CTTTCCCTC----CCGTCCCTCTTCTTCCCGGGTGACCTGGCGCCCAAACATCCCCGGCGTGCGGCTGGCATCCGGCGGGCGCACAGCCTGCCCATTAGTGCGGGAgccgcgcccgc-----gc-ccccggcg-------
i canFam3.chr35            I 1269 C 0
s dasNov3.JH580105            12974 128 -     45298 -----------------cccgg-ccacccg---ggcgccccgccccgg----ccTCCCC-----------GGTGACCTGTCGCCCGAGCATCCCCGGCATACTGCTGGCACC-----------CGGCCCGCCAATTAGC-CAGGCGCCCCTCCC--TGGCTGCTCGGAGGAGCCGCGG-
i dasNov3.JH580105         C 0 C 0

a score=1805027.000000
s hg38.chr6_GL000254v2_alt  1436115 151 +   4827813 TGTTACCTCCCCTGTCTCCCAAACACACC--CCTCCAGCTCTGTCCTG-CCTGCCCTGAATCTCTGGAAGGAAA-ACTTGCCCTGGGACCTGCCTTGGACTCTCTGGTTCCCCTCATCCAGCCCCTCCCTGCGCAGAACATGGCATCTCGTGCCC
s panTro5.chr6             30305502 151 + 175400573 TGTTACCTCCCCCGTCTCCCAAACACACC--CCTCCAGCTCTGTCCTG-CCTGCCCTGAATCTCTGGAAGGAAA-ACTGGCCCTGGGACCTGCCTTGGACTCTCTGGTTCCCCTCATCCATCCCCTCCCTGCGCAGAGCATGGCATCTCGCACCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30539821 151 + 173848474 TGTTACCTCCCCCGTCTCCCAAACACACC--CCTCCAGCTCTGTCCTG-CCTGCCCTGAATCTCTGGAAGGAAA-ACTGGCCCTGGGACCTGCCTTGGACTCTCTGGTTCCCCTCATCCAGCCCCTCCCTGCGCAGAGCATGGCATCTCGCACCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     246924 151 +   2037526 TGTTACCTTCCCCGTCTCCCAAACACACC--CCTCCAGCTCTGTCCTG-CCTGCCCTGAATCTCTGGAAGGAAA-ACTGGCCCTGGGACCTGCCTTGGACTCTCTGGTTCCCCTCATCCAGCCCCTCCCTGCGCAGAGCACAGCATCTCGCACCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74914034 151 + 122973662 TGTTACCTCCCCCGTCTCCCAAACACACC--ACTCCAGCTCTGTCCTG-CCTGCCCTGAACCTCTGGAAGGAAA-ACTGGCCCCGAGACCTGCCTTGGACCCTCTGGTTCCCCTCATCCAGCCCCTCCCTGAGCAGAGCACGGCATCTCGCACCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30793302 151 + 172585720 TGTTACCTCCCCCGTCTCCCAAACACACC--CCTCCAGCTCTGTCCTG-CCTGCCCTGAATCTCTGGAAGGAAA-ACTGGCCCCGGGACCTGCCTCGGACTCTCTGGCTCCCCTCATCCAGCCCCTCCCTCCGCAGAGGACGGTATCTCGCACAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30082821 151 - 170955103 TGTTACCTCCCCCGTCTCCCAAACACACC--TCTCCAGCTCTGTCCTG-CCTGCCCTGAATCTCTGGAAGGAAA-ACTGGCCCCGGGACCTGCCTCGGACTCTCTGGCTCCCCTCATCCAGCCCCTCCCTCCGCAGAGGACGGTATCTCGCACAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     332142 151 +   1495729 TGTTACCTCCCCCGTCTCCCAAACACACC--CCTCCAGCTCTGTCCTG-CCTGCCCTGAATCTCTGGAAGGAAA-ACTGGCCCCGGGACCTGCCTCGGACTCTCTGGCTCCCCTCATCCAGCCCCTCCCTCCGCAGAGGACGGTATCTCGCACAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     430001 151 -    863181 TGTTACCTCCCCCGTCTCCCAAACACACC--CCTCCAGCTCTGTCCTG-CCTGCCCTGAATCTCTGGAAGGAAA-ACTGGCCCCGGGACCTGCCTCGGACTCTCTGGCTCCCCTCATCCAGCCCCTCCCTCCGCAGAGGACGGTATCTCGCACAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29582068 151 -  71996105 TGTTACCTCCCCCGTCTCCCAAACACACC--CCTCCAGCTCTGTCCTG-CTTGCCCTGAATCTCTGGAAGGAAA-ACTGACCCCGGGACCTGCCTCGGACTCTCTGGCTCCCCTCATCCAGCCCCTCCCTCCGCAGAGGACGGTATCTCCCACAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     272562 151 -    735854 TGTTACCTCCCCCGTCTCCCAAACACACC--CCTCCAGCTCTGTCCTG-CCTGCCCGGAATCTCTGGAAGGAAA-ACTGGCCCCGGGACCTGCCTTGGACTCTCTGGCTCCCCTCATCCAGCCCCTCCCTCCACAGAGGATGGTATCTCGCACAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     220144 151 -   1829203 TGTTACCTCCCCCGTCTCCCAAACACACC--CCTCCAGCTCTGTCCTG-CCTGCCCTGAATCTCTGGAAGGAAA-ACTGGCCCCGGGACCTGCCTCGGACTCTCTGGCTCCCCTCATCCAGCCCCTCCCTCCACAGAGGGTGGTATCTCGCACAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30392968 152 + 171630274 TGTTACCTCCTCCATCTCCCAAACACACC--CCTCCAGCTCTGTCCTGCCCTGCCCTGAATCTCTGGAAGGAAA-ACTGGCCCCGGGACCTGCCTTGGACTCTCTGGCTCCCCACATCCAGCCCCTCCCTGCACAGAGCATGGTATCTCCAGCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           216981 151 +    515838 TGTTACCTCC-CCATCTCCCAAACACACC--CCTCCAGCTCTGTTCTGCCCTGCCCTGAATCTCTGGAAGGAAA-ACTGGCCCCGGGACCTGCCTTGGACTCTCTGGCTCCGCACATCCAGCCCCTCCCTGCACAGAGCATGGTATCTCGAGCCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     848546 151 -   1771730 TGTTACCTCT-CCATCTCCCAAACACACC--CCTCCAGCTCTGTCCTGCCCTGCCCTGAATCTCTGGAAGGAAA-ACTGGCCCCGGGACCTGCCTTGGACTCTCCTGCTCCCCACATCCAGCCCCTCCCTGCACAGCACATGGTATCTCGAGCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     334300 152 -    383796 TGTTACCTCCCCCATCTCCCAAACACACC--CCTCCAGCTCTGTCCTGCCCTGCCCTGAATCTCTGGAAGGAAA-ACTGGCCCTGGGACCTGCCTTGGACTCTCTGGCTCCCCACATCCAGCCCCTCCCTGCACAGAGCATGGTATCTGGAGCCC
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     116542 139 -   1411461 TGTTCCCCC-----------CAACACACT--CCTCTGGTCCTGTCCTGCCCCACCCTGCATCTCT-GGAGGAAA-ACTGG-CCCAGGACCTGCCCCGGACTCTCCGGCTCCCCTCAACGAGCCCCGCCCTGCACCGAGTGTGGCATCTCACACCC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           264734 145 +  18854210 TGTTACCCCT---------GTAACACACTGGGCTCCAGCCTTGTCCTGCCCCACCCTGCATCTCCGGGAGGAAA-ACTGGCCCCAGGACCTGCCTGGGACTCTCTAGCTCCCCTTAACAAGCCCCTCCCTGCACAAAGCGTGGCATCTCACTCCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58055375 146 -  94987271 -----CCTCCAGAGATCCCCCAACTCACC--CCTCCAGCCTTGCCCAATTCTATGTTGCATTTCTGGAAGTAAGCATTGGCCTCAGGACCTACCTAGGCCTCTC-AGCTCCTCTCCTGGATCCCCTCCTGGCGGGGAG-ATGGCATCTGGCACCC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26305988 104 +  26524999 ----------------------------c--cctccg------------cccgc-----gTGTCTGAGAGAGAA-GCTGGccc--gaccccgacccggactccgtggctgccgcc-ccgagcttccccccgcacccggcctggcctcgtgcgccc
i canFam3.chr35            C 0 I 587
s dasNov3.JH580105            13102  63 -     45298 -----------------------------------------------------------------------------------CCACACCCGCGT-GCACCCCCGGCCGTCCCGC--------CCACCTCCCGCAGAGCGCAGCAGCTCCTGCAG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               312294 406 + 123392446 I

a score=2707405.000000
s hg38.chr6_GL000254v2_alt  1436266 223 +   4827813 TTTTATCTGCCATTT--CTGGCCACCTTTGCAAGCGTCCTTGAAACCAGCGCTTGGTAGAGTTATCCACGCCCATGTGAGGCTCCCCTGCCCCCTG-GGTGGT---------------------------GTATGTGGCAGG--AGG----------AGCAGGGAGGAGCTTCAAGGAAGCAGAGGGAAAGGAACCTATAAGAGTTCTTGGGATGGCTTCCAGGAAGCTGTGAGGACAGAGCTAT-G-CTGAAAGGAGAAAGGCAAA
s panTro5.chr6             30305653 209 + 175400573 TTTTATCTGCCATTT--CTGGGCACCTTTGCAAGCGTCCTTGAAACCAGCGCTTGGTAGAGTTATCCACGCCCATATGAGGCTCCCCTGCCCT------------------------------------------TGGCAGG--AGG----------ATCAGGGAGGAGCTTCAAGGAAGCAGAGGGAAAGGAACCTATAAGAGTTCTTGGGATGGCTTCCAGGAAGCTGTGAGGACAGAGCTAT-G-CTGAAAGGAGAAAGGCAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30539972 223 + 173848474 TTTTATCTGCCATTT--CTGGGCACCTTTGCAAGCGTCCTTGAAACCAGCGCTTGGTAGAGTTATCCACGCCCATATGAGGCTCCCCTGCCCCCTG-GGTGGC---------------------------GTATGTGGCAGG--AGG----------ATCAGGGAGGAGCTTCAAGGAAGCAGAGGGAAAGGAACCTATAAGAGTTCTTGGGATGGCTTCCAGGAAGCTGTGAGGACAGAGCTAT-G-CTGAAAGGAGAAAGGCAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     247075 223 +   2037526 TTTTATCTGCCATTT--CTGGGCACCTTTGCAAGCGTCCTTGAAACCAGCGCTTGGTAGAGTTATCCACGCCCATGTGAGGCTCCCCTGCCCCCTG-GGTGGC---------------------------GTATGTGGCAGG--AGG----------AGCAGGGAGGAGCTTCAAGGAAGCAGAGGGAAAGGAACCTATAAGAGCTCTTGGGATGGCTTCCAGGAAGCTGTGAGGACAGAGCTAT-G-CTGAAAGGAGAAAGGCAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74914185 223 + 122973662 TTTTATCTGCCATTT--CTGGGCACCTTTGCAAGCGTCCTTGAAACCAGCGCTTGGTGGAGTTATCCACGCCCACATGAGGCTCCCCTGCCTCCTG-GGTGGC---------------------------GTGTGTGGCAGG--AGG----------AGCAGGGAGGAGCTTCAAGGAAGCAGAGGGAAAGGAACCTGTAAGAGCTCTTGGGATGGCTTCCAGGAAGCTGTGAAGATAGAGCTAT-G-CTGAAAGGAGAAAGGCAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30793453 222 + 172585720 TTTTATCTGCCATTT--CTGGGCACCTCTGTGAGCGTCCTTGAAACTAGCGCTTGATAGAGTTATCCACGCCCATGTGAGGCTCCCCTGTCCCCTG-GGTGGC---------------------------ATATGTGGCAGG--AGA----------AGCAGGGAGGAGCTTCAAGGAAGCAGA-GGAAAGGAACCTATAAGAGCTCTTGGGATGGCTTCCAGGAAGCTGTGAAGATAGAGCCAT-G-CTGAAAGGAGAAAGGCAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30082972 222 - 170955103 TTTTATCTGCCATTT--CTGGGCACCTTTGCGAGGGTCCTTGAAACTAGCGCTTGATAGAGTTATCCACGCCCATGTGAGGCTCCCCTGTCCCCTG-GGTGGC---------------------------ATATGTGGCAGG--AGA----------AGCAGGGAGGAGCTTCAAGGAAGCAGA-GGAAAGGAACCTATAAGAGCTCTTGGGATGGCTTCCAGGAAGCTGTGAAGATAGAGCCAT-G-CTGAAAGGAGAAAGGCAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     332293 222 +   1495729 TTTTATCTGCCATTT--CTGGGCACCTTTGCGAGGGTCCTTGAAACCAGTGCTTGATAGAGTTATCCACGCCCATGTGAGGCTCCCCTGTCCCCTG-GGTGGC---------------------------ATATGTGGCAGG--AGA----------AGCAGGGAGGAGCTTCAAGGAAGCAGA-GGAAAGGAACCTGTAAGAGCTCTTGGGATGGCTTCCAGGAAGCTGTGAAGATAGAGCCAT-G-CTGAAAGGAGAAAGGCAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     430152 221 -    863181 TTTTATCTGCCATTT--CTGGGCACCTTTGCGAGCGTCCTTGAAACTAGCGCTTGGTAGAGTTATCCACACCCATGTGAGGCTCCCCTGTCCCCTG-GGTGGC---------------------------ATATGTGGCAGG--AGA----------AGCAGGGAGGAGCTTCAAGGAAGCAGA-GGAAAGGAACCTGTAAGAGCTCTTGGGATGG-TTCCAGGAAGCCGTGAAGATAGAGCCAT-G-CTGAAAGGAGAAAGGCAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29582219 222 -  71996105 TTTTATCTGCCATTT--CTGGGCACCTTTGCGAGCGTCCTTGAAACTAGTGCTTGATAGAGTTATCCACGCCCATGTGAGGCTCCCCTGTCCCCTG-GGTGGC---------------------------ATATGTGGCAAG--AGA----------AGCAGGGAGGAGCTTCAAGGAAGCAGA-GGAAAGGAACCTATAAGAGCTCTTGGGATGGCTTCCAGGAAGCTGTGAAGATAGAGCCAT-G-CTGAAAGGAGAAAGGCAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     272713 221 -    735854 TTTTATCTGCCATTT--CTGGACACCTTTGCGAGCGTCCTTGAAACTAGCGCTTGATAGAGTTATCCACGCCCATGTGAGGCTCCCCTGTCTCCTG-GGTGGC---------------------------ATATGTGGCAGG--AGA----------AGCAGGGAGGAGCTTCAAGGAAGCAGA-GGAAAGGAACCTATAAGAGCTCTTGGGATGG-TTCCAGGAAGCCGTGAAGATAGAGCCAT-G-CTGAAAGGAGAAAGGCAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     220295 222 -   1829203 TTTTATCTGCCATTT--CTGGGCATCTTTGCGAGCGTCCTTGAAGCCAGCACTTGGTAGAGTTATCCACGCCCATGTGAGGCTCCCCTGTCCCCTG-GGTGGC---------------------------ATATGTGGCAGG--AGA----------AGCAGGGAGGAGCTTCAAGGAAGCAGA-GGAAAGGAACCTATAAGAGCTCTTGGGATGGCTTCCAGGAGGCTGTGAAGATAGAGCCAT-G-CTGCAAGGAGAAAGGCAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30393120 233 + 171630274 TTTTATCTGCCATCT--CTGAGCACCTTTGTGAGCGTCCTTGAAACCAGCGCTTGGTAGAGTTATCCACGCCCATGCCAGGCTTCCCTGCCCCCGC-TGTGGC---------------------------ATGTACCCCAGG--AGGAGCAGGGAGAAGCAGGGAGGAGCTTCAAGAAAGCAGATGAAAAGGAACCCATAAAAGCCCTTGGGATGGCTTCTAGGAAGCTATGAAGATAGAGCTAC-A-CTGAAAGGAGAAAGGCAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           217132 223 +    515838 TTTTATCTGCCATCT--CTGAGCACCTTTGTGAGCGTCCTTGAAACCAGCGCTTGGTACAGGTATCCACGCCCATGCCAGGCTCCCCTGCCCCCGG-GGTGGC---------------------------ATGTACCCCAGG--AGG----------AGCAGGGAGGAGCTTCAAGGAAGCAGATGAAAAGGAACCCATAAAAGCCCTTGGGATCGCTTCTAGGAAGCTGTGAAGATAGAGCTGC-T-CTGAAAGGAGAAAGGCAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     848697 223 -   1771730 TTTTATCTGCCATCT--CTGAGCACCTTTGTGAGCGTCCTTGAAACCAGTGCTTGGTAGAGTTATCCACACCCATGCCAGGCTCCCCTGCCCCCGG-GGTGGC---------------------------ATGTACCCCAGG--AGG----------AGCAAGGAGGAGCTTCAAGGAAGCAGATGAAAAGGAACCCATAAAAGCCCTTGGGATGGCTTCTAGGAAGCTGTGAAGATAGAGCTAT-G-CTGAAAGGAGAAAGGCAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     334452 223 -    383796 TTTTATCTGCCATCT--CTGAGCACCTTTGTGAGCGTCCTTGAAACCAGCGCTTGGTAGAGTTATCCACGCCCATGCCAGGCTCCCCTGCCCCCGG-GGTGGC---------------------------ACGTACCCCAGG--AGG----------AGCAGGGAGGAGCTTCAAGGAAGCAGATGAAAAGGAACCCATAAAAGCCCTTGGGATGGCTTCTAGGAAGCTGTGAAGATAGAGCTAC-A-CTGAAAGGAGAAAGGCAAA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     116681 224 -   1411461 TTTTATCTGCCCTCTCTCTGAGCACCTGTGTGAGCGTCCTTGAAACCA--GCTTGGAAGAGTTATCCACACCCATGCCAGGCGCTCCTGCCCCTAGGGGTGGC---------------------------GTGTGTGTCGGG--AAG----------AGCAGGAAGGAGCTTCAAGGAAGCGGAGGGAAAGGAAGCCACAAGCACTCTTGGGATGGCTCTGAGGAAGCTGTGAAGATACACGTAT-G-CTGGGAGGAGGAAGGCAAA
i proCoq1.NW_012149775v1   C 0 I 126
s otoGar3.GL873550           264879 249 +  18854210 TTTTATCTGTCCTTTTATCTGCCATCTCTCTGAGCA-CCTTGAAACCAG-GCTTAGAAGAGTTATCCACACCCATGCTGGGCTCTCCTGCTCCCAGTGGTGGCAAGGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgAGG--AAG----------AGCAGGAAAGAGCTTCAAGGAAGTGGAGGGAAAGGAGGCCAC-AGCACTCTTGGGACGGCTCTGAGGAAGCTTTGAAGATGAATCTAT-T-CTGGGAGGC-GAAAGCAAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58055521 215 -  94987271 TTTTATCTACAATCT--CAGAACACTTTTGTGAGCATCTTTGAAACCTGGGTTTGGTAGCTGTGTCCACACCCATGCTG---CTCCCTGTCCC-AG-GGGGGC---------------------------ATGCAAAGCATG--AAG----------AGTAGGAGGGA-CTTCAGAGAAGCAGAGGAAATGGTGCTTACAAAAGTTTGTGAGGTGCTTCCAACAAAACTGTGA----AGAGCTGTCA-CTGGGAGGAGAAAGGTGAG
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            13165 189 -     45298 GTTTACCTGCCCACT--CTGAGCACCTTTGC--GCGTCCTGGCAACCGAGGCTTGCTAGAGGCAcccgcggc--ggcccggctccc--gccccggg-ggtggc---------------------------gcgcgAGGCAGGCAGGG----------GGCAGGGAGGGCCT--------------GGGGAGGAACCTGT-------CCTGGG--GGCT--CAGGAAGCTCTGGCCGTGCGCCCGC-GCCTGGCAGGTGGCA------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               312294 406 + 123392446 I
e canFam3.chr35            26306092 587 +  26524999 I

a score=771381.000000
s hg38.chr6_GL000254v2_alt  1436489 74 +   4827813 GGCTACAGAAAAGTGAACACTGAAGAGGAATTAGGCAAGAACAAAG-----CCTACCAAGTTAGAAGAAGGGAATGAGA
s panTro5.chr6             30305862 73 + 175400573 G-CTACAGAAAAGTGAACACTGAAGAGGAATTAGGCAAGAACAAAG-----CCTACCAAGTTAGAAGAAGGGAATGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30540195 73 + 173848474 G-CTACAGAAAAGTGAACACTGAAGAGGAATTAGGCAAGAACAAAG-----CCTACCAAGTTAGAAGAAGGGAATGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     247298 73 +   2037526 G-CTACAGAAAAGTGAACACTGAAGAGGAATTAGGCAAGAACAAAG-----CCTACCAAGTTAGAAGAAGGGAATGAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74914408 74 + 122973662 GGCTACAGAGAAGTGAACACTGAAGAGGAATTAGGCAAGAACAAAG-----CCTACTAAGTTAGAAGAAGGGAATGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30793675 74 + 172585720 GGCTACAGAGAAGTGAACACTGAAGAGAAATTAGACAAGAATAAGG-----CCTACAAAGTTAGAGGAAGGGAATGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30083194 74 - 170955103 GGCTACAGAGAAGTGAACACTGAAGAGAAATTAGGCAAGAATAAGG-----CCTACAAAGTTAGAGGAAGGGAATGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     332515 74 +   1495729 GGCTACAGAGAAGTGAACACTGAAGAGAAATTAGGCAAGAATAAGG-----CCTACAAAGTTAGAGGAAGGGAATGGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     430373 74 -    863181 GGCTGCAGAGAAGTGAACACTGAAGAGAAATTAGGCAAGAATACGG-----CCTACAAAGTTAGAGGAAGGGGATGGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29582441 74 -  71996105 GGCTACAGAGAAGTGAACACTGAAGAGAAATTAGGCAAGAATAAGG-----CCTACAAAGTTAGAGGAAGGGAATGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     272934 74 -    735854 GGCTACAGAGAAGTGAACACTGAAGAGAAATTAGGCAAGAATAAGG-----CCTACAAAGTTAGAGGAAGGGAATGGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     220517 74 -   1829203 GGCTACAGAGAAGTGAACACTGAAGAGAAGTTAGGCAAGAACAAGG-----CCTACAAAGTTGGAGGAAGGGAATGGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30393353 79 + 171630274 GGCTACAGAGAAGTGGACACTGAAGAGGAATTAGGCAAGAACAAGGCAAGCCTTACTAAGTCAGAGCAAGGGAATGGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           217355 79 +    515838 GGCTTCAGAGAAGTCGACACTGAAGAGAAATTAGACAAGATCAAGGCAAGACTGACTAAGTCGGGGGAAGGGAATGGGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     848920 79 -   1771730 GGCTACAGAGAAGTGGACACTGAAGAGGAATTAGGCAAGATCAAGGCAAGCCTTACTAAGTCAGAGGAAGGGAATGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     334675 78 -    383796 GGCTACAGAGAAGTGGACACTGAAGAGGAATTAGGCAAGAACAAGGCAAG-CTCACTAAGTCAGAGGAAGGGAATGGGA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           265128 70 +  18854210 -GGCACAGAGAAGTGGACATT---GAGGAATTAGGAAAGAACAGGG-----CCCACCAAGTTAGAAGATAGGAATGGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58055736 61 -  94987271 ------------GTGGACACTGAGAAGGGACTTTGGGAAGACAGTG-----CCCACCAAGGCAGATGGAGAGCAGAAG-
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            13354 70 -     45298 GGCTGCAGGGAAACGGAGGGCGTTAGGGGAGGGGGCAGGATGCAGG-----C--ACCGAGTCAGGGGAAGGGATGGA--
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               312294 406 + 123392446 I
e proCoq1.NW_012149775v1     116905 126 -   1411461 I
e canFam3.chr35            26306092 587 +  26524999 I

a score=241360.000000
s hg38.chr6_GL000254v2_alt  1436563 18 +   4827813 GGGCGAAACAACAGCACC
s panTro5.chr6             30305935 18 + 175400573 GGGCGAAACAACAGCACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30540268 18 + 173848474 GGGCGAAACAACAGCACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     247371 18 +   2037526 GGGCGAAACAACAGCACC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74914482 18 + 122973662 GGGTGAAACAACAGCACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30793749 18 + 172585720 GGGCAAAACAACAGCACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30083268 18 - 170955103 GGGCAAAACAACAGCACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     332589 18 +   1495729 GGGCAAAACAACAGCACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     430447 18 -    863181 GGGCAAAACAACAGCACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29582515 18 -  71996105 GGGCAAAACAACAGCACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     273008 18 -    735854 GGGCAAAACAACAGCACC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     220591 18 -   1829203 GGGCAAAACAACAGCACC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30393432 18 + 171630274 GGGCAAAACTACAGCACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           217434 18 +    515838 GGGCGAAGCAACAGCACC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     848999 18 -   1771730 GGGCGAAGCAACAACATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     334753 15 -    383796 GGGAGAAACAACACC---
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               312700 18 + 123392446 GGGTGAAACAACAGCACC
i micMur3.chr6             I 406 C 0
s otoGar3.GL873550           265198 18 +  18854210 GGGTGAAACAACAGCACT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58055797 18 -  94987271 GCGAGAAACAACCACACC
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            13424 18 -     45298 GGGTGACACTGCAGCGAC
i dasNov3.JH580105         C 0 C 0
e proCoq1.NW_012149775v1     116905 126 -   1411461 I
e canFam3.chr35            26306092 587 +  26524999 I

a score=7279.000000
s hg38.chr6_GL000254v2_alt  1436581 1 +   4827813 A
s panTro5.chr6             30305953 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30540286 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     247389 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74914500 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30793767 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30083286 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     332607 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     430465 1 -    863181 A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29582533 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     273026 1 -    735854 A
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     220609 1 -   1829203 A
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30393450 1 + 171630274 G
i calJac3.chr4             C 0 C 0
s micMur3.chr6               312718 1 + 123392446 A
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           265216 1 +  18854210 G
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58055815 1 -  94987271 A
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            13442 1 -     45298 G
i dasNov3.JH580105         C 0 C 0
e proCoq1.NW_012149775v1     116905 126 -   1411461 I
e canFam3.chr35            26306092 587 +  26524999 I
e saiBol1.JH378341           217452 0 +    515838 C
e aotNan1.NW_018496904v1     334768 0 -    383796 C
e cebCap1.NW_016107755v1     849017 0 -   1771730 C

a score=72583.000000
s hg38.chr6_GL000254v2_alt  1436582 8 +   4827813 GAAAGGAA
s panTro5.chr6             30305954 8 + 175400573 GAAAGGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30540287 8 + 173848474 GAAAGGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     247390 8 +   2037526 gaaaggaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74914501 8 + 122973662 GAAAGGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30793768 8 + 172585720 GAAAGGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30083287 8 - 170955103 GAAAGGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     332608 8 +   1495729 GAAAGGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     430466 8 -    863181 GAAAGGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29582534 8 -  71996105 GAAAGGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     273027 8 -    735854 GAAAGGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     220610 8 -   1829203 GAAAGGAA
i colAng1.NW_012115577v1   C 0 C 0
s micMur3.chr6               312719 8 + 123392446 GAAAGGAA
i micMur3.chr6             C 0 I 45
s mm10.chr17               58055816 8 -  94987271 GAAACAAA
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            13443 8 -     45298 GGAAGGAA
i dasNov3.JH580105         C 0 C 0
e proCoq1.NW_012149775v1     116905 126 -   1411461 I
e canFam3.chr35            26306092 587 +  26524999 I
e saiBol1.JH378341           217452 0 +    515838 C
e otoGar3.GL873550           265217 0 +  18854210 C
e aotNan1.NW_018496904v1     334768 0 -    383796 C
e cebCap1.NW_016107755v1     849017 0 -   1771730 C
e calJac3.chr4             30393451 0 + 171630274 C

a score=8281.000000
s hg38.chr6_GL000254v2_alt  1436590 1 +   4827813 T
s panTro5.chr6             30305962 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30540295 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     247398 1 +   2037526 t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74914509 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30793776 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30083295 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     332616 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     430474 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29582542 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     273035 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     220618 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s mm10.chr17               58055824 1 -  94987271 T
i mm10.chr17               C 0 I 294
s dasNov3.JH580105            13451 1 -     45298 T
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               312727 45 + 123392446 I
e proCoq1.NW_012149775v1     116905 126 -   1411461 I
e canFam3.chr35            26306092 587 +  26524999 I
e saiBol1.JH378341           217452 0 +    515838 C
e otoGar3.GL873550           265217 0 +  18854210 C
e aotNan1.NW_018496904v1     334768 0 -    383796 C
e cebCap1.NW_016107755v1     849017 0 -   1771730 C
e calJac3.chr4             30393451 0 + 171630274 C

a score=27462.000000
s hg38.chr6_GL000254v2_alt  1436591 4 +   4827813 GAGG
s panTro5.chr6             30305963 4 + 175400573 GAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30540296 4 + 173848474 GAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     247399 4 +   2037526 gagg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74914510 4 + 122973662 GAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30793777 4 + 172585720 GAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30083296 4 - 170955103 GAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     332617 4 +   1495729 GAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     430475 4 -    863181 GAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29582543 4 -  71996105 GAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     273036 4 -    735854 GAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     220619 4 -   1829203 GAGG
i colAng1.NW_012115577v1   C 0 C 0
s dasNov3.JH580105            13452 4 -     45298 GGGG
i dasNov3.JH580105         C 0 I 1505
e micMur3.chr6               312727 45 + 123392446 I
e mm10.chr17               58055825 294 -  94987271 I
e proCoq1.NW_012149775v1     116905 126 -   1411461 I
e canFam3.chr35            26306092 587 +  26524999 I
e saiBol1.JH378341           217452 0 +    515838 C
e otoGar3.GL873550           265217 0 +  18854210 C
e aotNan1.NW_018496904v1     334768 0 -    383796 C
e cebCap1.NW_016107755v1     849017 0 -   1771730 C
e calJac3.chr4             30393451 0 + 171630274 C

a score=1374720.000000
s hg38.chr6_GL000254v2_alt  1436595 246 +   4827813 TTgccgggcacggtggctcatacctgtaatcccagcactttgggaggccgaggcaggcgaaccacctgaggtcgggagttcgagaccag--cctgaccaacatggagaaaccctgtctctactaaaaatacaaaattagctgggtatggtggtgcatgtctgtaa-tcccagctactcagtgaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgtggtgagccgatgcgccattgca
s panTro5.chr6             30305967 246 + 175400573 Gggccaggagcagtggctcatacctgtaatcccagcactttgggaggccgaggcaggcgaaccacctgaggtcgggagttcgagaccag--cctgaccaacatggagaaaccctgtctctactaaaaatacaaaattagctgggcatggtggtgcatgtctgtaa-tcccagctactcagtgaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgtggtgagccgatgcgccattgca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30540300 246 + 173848474 Gggccaggagcggtggctcatacctgtaatcccagcactttgggaggccgaggcaggcgaaccacctgaggtcgggagttcgagaccag--cctgaccaacatggagaaaccctgtctctactaaaaatacaaaattagctgggcatggtggtgcatgtctgtaa-tcccagctactcagtgaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgtggtgagccaatgcgccattgca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     247403 245 +   2037526 gggccaggcgcggtggctcatacctgtaatcccagcac-ttgggaggccgaggcaggcgaaccacctgaggtcgggagttcaagaccag--cctgaccaacatggagaaaccctgtctctactaaaaatacaaaattagctgggcatggtggtgcatgtctgtaa-tcccagctactcagtgaggctgaggccggagaatcgcttgaacccgggagtcggaggttgtggtgagccgatgcgtcattgca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74914514 246 + 122973662 Gggccgggcgcggtggctcacgcctgtaatctcagcactttgggaggccgaggcaggtgaatcacctgaggtcgggagtttgagaccag--cctgaccaacatggagaaaccccatctctactaaaagtacaaaattagctgggcgtggtggcgcatgtctgtaa-tcccagctactcagtgaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgtggtgagccgatgcgccattgca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30793781 246 + 172585720 Aggccgggcatggtggctcatgcctgtaatcacagcactttgggaggctaaggcgggcgaatcacctgaggtcaagagttcgagaccag--cctgaccaacatggagaaaccccgtctttactaaaaatacaaaattagccaggcatggtggcgcatgtctgtaa-ttccagctgctcggtgaggctgaggcaggagaattgcttgaacctgggaggcagaggttgtggtgagccagcatgccattgca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30083300 246 - 170955103 Aggccgggcatggtggctcatgcctgtaatcacagcactttgggaggctaaggcgggcgaatcacctgaggtcaagagttcgagaccag--cctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccgggcatggtggtgcatgtctgtaa-ttccagctgctcggtgaggctgaggcaggagaattgcttgaacccgggaggcggaggttgtggtgagccagcacgccattgca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     332621 246 +   1495729 Aggccgggcatggtggctcatgcctgtaatcacagcactttgggaggctaaggtgggcgaatcacctgaggtcaagatttcgagaccag--cctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccgggcatggtggtgcatgtctgtaa-ttccagctgctcggtgaggctgaggcaggagaattgcttgaacccgggaggtggaggttgtggtgagccagcacgccactgca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     430479 246 -    863181 Aggccgggcatggtggctcatgcctgtaatcacagcactttgggaggctaaggtgggcgaatcacctgaggtcaagagttcgagaccag--cctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccgggcatggtggcgcatgtctgtaa-ttccagctgctcagtgaggctgaggcaggagaattgcttgaacccgggaggcggaggttatggtgagccagcacgccattgca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29582547 246 -  71996105 Aggccgggcatggtggctcatgcctgtaatcgcagcactttgggaggctaaggcgggcgaatcacctgaggtcaagagttcgagaccag--cctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccgggcatggtggtgcatgtctgtaa-ttccagctactcggtgaggctgaggcaggagaattgcttgaacccgggaggcggaggttgtggtgagccagcacgccattgca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     273040 246 -    735854 Aggccgggcgcggtggctcatgcctgtaatcacagcactttgggaggctaaggcgggcgaatcacctgaggtcaagagttcgagaccag--cctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccgggcatggtggcgtatgtctgtaa-ttccagctactcggtgaggctgaggcaggagatttgcttgaatccaggaggcggaggttgtggtgagccagcacgccattgca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     220623 249 -   1829203 Aggccgggcatggtggctcatgcctgtaatcacagcactttgagaggctaaggcgggcgaatcacctgaggtcaagagttcgagaccaatccctgaccaacatggagaaaccccgtctctactaaaaatgcaaaattagccgggcatggtggcgtatgtctgtaatttcctgctactcggtaaggctgaggcaggagaattgcttgaacccgggaggcggaagttgtggtgagccaacacgctgttgca
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               312727  45 + 123392446 I
e mm10.chr17               58055825 294 -  94987271 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     116905 126 -   1411461 I
e canFam3.chr35            26306092 587 +  26524999 I
e saiBol1.JH378341           217452   0 +    515838 C
e otoGar3.GL873550           265217   0 +  18854210 C
e aotNan1.NW_018496904v1     334768   0 -    383796 C
e cebCap1.NW_016107755v1     849017   0 -   1771730 C
e calJac3.chr4             30393451   0 + 171630274 C

a score=212170.000000
s hg38.chr6_GL000254v2_alt  1436841 47 +   4827813 ctccagcctgggcaacaagagcaaaactgcatctcaaaaaaaaaaaa
s panTro5.chr6             30306213 47 + 175400573 ctccagcctgggcaacaagagcaaaactgcatctcaaaaaaaaaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30540546 47 + 173848474 ctccagcctgggcaacaagagcaaaactgcatctacaaaaaaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     247648 47 +   2037526 ctccagcctgggcaacaagagcaaaactgcatctcaaaaaaaaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74914760 47 + 122973662 ctccagcctgggcaacaaaagaaaaactgcatctcaaaaaagaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30794027 38 + 172585720 ctccagcctgggcaacaagagcaaaactccatctcaaa---------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30083546 38 - 170955103 ctccagcctgggcaacaagagcaaaactccatctcaaa---------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     332867 38 +   1495729 ctccagcctgggcaacaagagcaaaactccatctcaaa---------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     430725 38 -    863181 ctccagcctaggcaacaagagcaaaactccatctcaaa---------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29582793 39 -  71996105 ctccagcctgggcaataagagcaaaactccatctcaaaa--------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     273286 42 -    735854 ctccagcctgggcaacaagagcaaaactccatctcaaaaCaa-----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     220872 42 -   1829203 ctccagcctgggcaacaagagcaaaactccatctcaaaaaaa-----
i colAng1.NW_012115577v1   C 0 C 0
s mm10.chr17               58056119 39 -  94987271 CTCTAGCC----CAATAAGAG----ACTTTGTTTCAAAAAAACAAGA
i mm10.chr17               I 294 I 497
e micMur3.chr6               312727 45 + 123392446 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     116905 126 -   1411461 I
e canFam3.chr35            26306092 587 +  26524999 I
e saiBol1.JH378341           217452  0 +    515838 C
e otoGar3.GL873550           265217  0 +  18854210 C
e aotNan1.NW_018496904v1     334768  0 -    383796 C
e cebCap1.NW_016107755v1     849017  0 -   1771730 C
e calJac3.chr4             30393451  0 + 171630274 C

a score=-998.000000
s hg38.chr6_GL000254v2_alt  1436888 4 +   4827813 aaag
s panTro5.chr6             30306260 4 + 175400573 aaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30540593 1 + 173848474 g---
i panPan2.chr6             C 0 I 190
s gorGor5.CYUI01015528v1     247695 4 +   2037526 aaaa
i gorGor5.CYUI01015528v1   C 0 I 15
s nomLeu3.chr1a            74914807 4 + 122973662 agaa
i nomLeu3.chr1a            C 0 I 5
e micMur3.chr6               312727 45 + 123392446 I
e mm10.chr17               58056158 497 -  94987271 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     116905 126 -   1411461 I
e canFam3.chr35            26306092 587 +  26524999 I
e saiBol1.JH378341           217452 0 +    515838 C
e otoGar3.GL873550           265217 0 +  18854210 C
e aotNan1.NW_018496904v1     334768 0 -    383796 C
e cebCap1.NW_016107755v1     849017 0 -   1771730 C
e calJac3.chr4             30393451 0 + 171630274 C
e colAng1.NW_012115577v1     220914 0 -   1829203 C
e manLeu1.NW_012107142v1     273328 0 -    735854 C
e chlSab2.chr17            29582832 0 -  71996105 C
e cerAty1.NW_012002535v1     430763 0 -    863181 C
e macNem1.NW_012012100v1     332905 0 +   1495729 C
e macFas5.chr4             30083584 0 - 170955103 C
e rheMac8.chr4             30794065 0 + 172585720 C

a score=74401.000000
s hg38.chr6_GL000254v2_alt  1436892 25 +   4827813 aagaaaga-a-agaaagaaaaagaaaa
s panTro5.chr6             30306264 25 + 175400573 aagaaaga-a-agaaagaaaaagaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30540784 25 + 173848474 aagaaaga-a-agaaagaaaaagaaaa
i panPan2.chr6             I 190 C 0
s gorGor5.CYUI01015528v1     247714 25 +   2037526 aagaaaga-a-agaaagaaaaagaaaa
i gorGor5.CYUI01015528v1   I 15 C 0
s nomLeu3.chr1a            74914816 26 + 122973662 aagaaaaata-aaaaagaaaaagaaaa
i nomLeu3.chr1a            I 5 C 0
s rheMac8.chr4             30794065 16 + 172585720 -----------aaaaagaaaaagaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30083584 16 - 170955103 -----------aaaaagaaaaagaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     332905 16 +   1495729 -----------aaaaagaaaaagaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     430763 16 -    863181 -----------aaaaagaaaaagaaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29582832 16 -  71996105 -----------aaaaagaaaaagaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     273328 18 -    735854 ---------agaaaaagaaaaagaaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     220914 18 -   1829203 ---------agaaaaagaaaaagaaaa
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               312727 45 + 123392446 I
e mm10.chr17               58056158 497 -  94987271 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     116905 126 -   1411461 I
e canFam3.chr35            26306092 587 +  26524999 I
e saiBol1.JH378341           217452  0 +    515838 C
e otoGar3.GL873550           265217  0 +  18854210 C
e aotNan1.NW_018496904v1     334768  0 -    383796 C
e cebCap1.NW_016107755v1     849017  0 -   1771730 C
e calJac3.chr4             30393451  0 + 171630274 C

a score=9555.000000
s hg38.chr6_GL000254v2_alt  1436917 1 +   4827813 a
s panTro5.chr6             30306289 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30540809 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     247739 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74914842 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30794081 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30083600 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     332921 1 +   1495729 a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     430779 1 -    863181 a
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29582848 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     273346 1 -    735854 a
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     220932 1 -   1829203 a
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           217452 1 +    515838 A
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     849017 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     334768 1 -    383796 A
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               312727 45 + 123392446 I
e mm10.chr17               58056158 497 -  94987271 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     116905 126 -   1411461 I
e canFam3.chr35            26306092 587 +  26524999 I
e otoGar3.GL873550           265217 0 +  18854210 C
e calJac3.chr4             30393451 0 + 171630274 C

a score=391090.000000
s hg38.chr6_GL000254v2_alt  1436918 35 +   4827813 gaaaGGAATGAGGATCAGGAGTCGGGGGGAGAGAC
s panTro5.chr6             30306290 35 + 175400573 gaaagGAATGAGGATCAGGAGTCGGGGGGAGAGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30540810 35 + 173848474 gaaagGAATGAGGATCAGGAGTCGGGGGGAGAGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     247740 34 +   2037526 gaaaggaaTGAGGATCAGGAGTC-GGGGGAGAGAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74914843 35 + 122973662 gaaaGGAATGAGGATCAGGAGTCGGGGGGAGAGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30794082 35 + 172585720 gaaaGGAATGAGGATCAGGAGTTGGGGGGAGAGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30083601 35 - 170955103 gaaaGGAATGAGGATCAGGAGTCGGGGGGAGAGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     332922 35 +   1495729 gaaaGGAATGAGGATCAGGAGTCGGGGGGAGAGAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     430780 35 -    863181 gaaaGGAATGAGGATCAGGAGTTGGGGGGAGAGAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29582849 35 -  71996105 gaaaGGAATGAGGATCAGGAGTCAGGGGGAGAGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     273347 35 -    735854 gaaaGGAATGAGGATCAGGAGTCGGGGGGAGAGAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     220933 35 -   1829203 gaaaGGAATGAGGATCAGGAGTCGGGGGGAGAGAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30393451 35 + 171630274 GAAAGGAATGAGGACCAGGAGTGGGGAGGAGAGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           217453 35 +    515838 GAAAGGAATGAGGACCAGGAGTGGGGAGGAGAGAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     849018 35 -   1771730 GAAAGGAATGAGGACCAGGAGTGGGGAGGAGACAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     334769 35 -    383796 GAAaggaatgaggacgaggagtggggaggagagac
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           265217 35 +  18854210 GAAAGGAATGAGGAACAGAGATGGGGAAGAGAAGG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               312727 45 + 123392446 I
e mm10.chr17               58056158 497 -  94987271 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     116905 126 -   1411461 I
e canFam3.chr35            26306092 587 +  26524999 I

a score=248908.000000
s hg38.chr6_GL000254v2_alt  1436953 20 +   4827813 ATGATCTTACAGAACGGGCT
s panTro5.chr6             30306325 20 + 175400573 ATGATCTTACAGAACGGGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30540845 20 + 173848474 ATGATCTTACAGAACGGGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     247774 20 +   2037526 ATGATCTTACAGAACGGGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74914878 20 + 122973662 ATGATCTTACAGAAGGGGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30794117 20 + 172585720 ATGATTTTACAGAAGGGGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30083636 20 - 170955103 ATGATCTTACAGAAGGGGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     332957 20 +   1495729 ATGATCTTACAGAAGGGGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     430815 20 -    863181 ATGATCTTACAGAAGGGGCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29582884 20 -  71996105 ATGATCTTACAGAAGGGGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     273382 20 -    735854 ATGATCTTACAGAAGGGGCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     220968 20 -   1829203 ATGATCTTACAGAAGGGGCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30393486 20 + 171630274 GTGATCTTACAGAAGGAGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           217488 20 +    515838 ATTATCTTACAGAAGGGGCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     849053 20 -   1771730 GTGATCTTACAGAAGGGGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     334804 20 -    383796 gtgaTCTTACAGAAGGGGCT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     117031 20 -   1411461 ATGATCTTGCAGAAGTGGCT
i proCoq1.NW_012149775v1   I 126 C 0
s otoGar3.GL873550           265252 20 +  18854210 ATGATCTGCCAGAAGTGGCT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               312727 45 + 123392446 I
e mm10.chr17               58056158 497 -  94987271 I
e dasNov3.JH580105            13456 1505 -     45298 I
e canFam3.chr35            26306092 587 +  26524999 I

a score=2354180.000000
s hg38.chr6_GL000254v2_alt  1436973 179 +   4827813 GGACCTGGGGAGAGGATTTTGTCAGAACTATGGAAAGTTTGAAATGAGGTTGAAGAAGGA---GTGATGGTA-----ATACTTTTTACATTTTTAGAACATCTTCTTATATTTTATTTCATCATTCATTCCTCAtagatctcattacccccattttacggatcaagaaactgaggctcagagaggtg
s panTro5.chr6             30306345 179 + 175400573 GGACCTGGGGAGAGGATTTTGTCAGAACTATGGAAAGTTTGAAATGAGGTTGAAGAAGGA---GTGATAGTA-----ATACTTTTTACATTTTTAGAACATCTTCTTATATTTTATTTCATCATTCATTCCTCAcagatatcattacccccattttacagatcaagaaactgaggctcagagaggtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30540865 179 + 173848474 GGACCTGGGGAGAGGATTTTGTCAGAACTATGGAAAGTTTGAAATGAGGTTGAAGAAGGA---GTGATAGTA-----ATACTTTTTACATTTTTAGAACATCTTCTTATATTTTATTTCATCATTCATTCCTCAcagatatcattacccccattttacagatcaagaaactgaggctcagagaggtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     247794 178 +   2037526 GGACCTGGGGAGAGGATTTTGTCAGAACTATGGAAAGTTTGAAATGAGGTTGAAGAAGGA---GTGATAGTA-----ATACTTTTTACA-TTTTAGAACATCTTCTTAtattttatttcatcattcattcctcatagatatcattacccccattttacagatcaagaaactgaggctcagagaggtg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74914898 179 + 122973662 GGACCTGGGGAGAGGTTTTTGTCAGAACTATGGAAAGTTTGAAATGAGGTTGAAGAAGGA---GTGATAGTA-----ATACTTtttacatttttagaacatcttcatatattttatttcatcattcattcatcataggtatcattacccccattttacagatcaagaaactgaggctcagagaggtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30794137 179 + 172585720 GGACCTGGGGAGAAGATTTTGTCAGAACTATGGAAAGTTTGATATGAGATTGAAGGAGGA---GTGATAGTA-----ATACTTTTTACATTTTTGGAACATCTTCATATATTTTATTTCATCATTCATTCATCAtagatatcattacccccattttacagatcaagaaactgaggctcagagaggtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30083656 179 - 170955103 GGACCTGGGGAGAAGATTTTGTCAGAACTATGGAAAGTTTGATATGAGATTGAAGGAGGA---GTGATAGTA-----ATACTTTTTACATTTTTGGAACATCTTCATATATTTTATTTCATCATTCATTCATCAtagatatcattacccccattttacagatcaagaaactgaggctcagagaggtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     332977 179 +   1495729 GGACCTGGGGAGAAGATTTTGTCAGAACTATGGAAAGTTTGATATGAGATTGAAGAAGGA---GTGATAGTA-----ATACTTTTTACATTTTTGGAACATCTTCATATATTTTATTTCATCATTCATTCATCAtagatatcattacccccattttacagatcaagaaactgaggctcagagaggtg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     430835 179 -    863181 GGACCTGGGGAGAAGATTTTGTCAGAACTATGGAAAGTTTGATATGACATTGAAGAAGGA---GTGATAGTA-----ATACTTTTTACATTTTTGGAACATCTTCATATATTTTATTTCATCATTCATTCATCAtaggtatcattacccccattttacagatcaagaaactgaggctcagagaggtg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29582904 179 -  71996105 GGACCTGGGGAGAAGATTTTGTCAGAACTATGGAAAATTTGATATGAGATTGAAGAAGGA---GTGATAGTA-----ATACTTTTTACATTTTTGGAACATCTTCATATGTTTTATTTCATCATTCATTCATCAtagatatcattacccccattttacagatcaagaaactgaggctcagagaggtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     273402 179 -    735854 GGACCTGGGGAGAAGATTTTGTCAGAACTATGGAAAGTTTGATATGAGATTGAAGAAGGA---GTGATAGTA-----ATACTTTTTACATTTTTGGAACATCTTCATATATTTTATTTCATCATTCATTCATCAtagatatcattacccccattttacagatcaagaaactgaggctcagagaggtg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     220988 179 -   1829203 GGACCTGGGGAGAGGATTTTGTCAGAACTATGGAAAGTTTGATATGAGATTGAAAAAGGA---GTGATAGTA-----ATACTTTTTACATATTTGGAACATCTTCATATATTTTATTTCATCATTCATTCATCAtagatatcattacccccattttacagatcaagaaactgaggctcagagaggtg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30393506 179 + 171630274 GGGCCTGAGGAAAGGATTTTGTCAGAACCGTGGAAAGTTTGAAATGAGGTTGAAGAAAGA---CTAATAGTA-----ATACCTTTTCCATTTTTAGAGCATCTTCATATATTTTCTTTCATCATTAGTTCATTAtagatatcattacccccattttacagatcaagaaactgaggctcagagaggcg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           217508 179 +    515838 GGGCCTGAGGAAAGGATTTTGTCAGAACTATGGAAAGTTTGAAATGAGGTTGAAGAAAGA---CTAATAata-----acacttgttacatttttagagcatcttcatgtattttatttcatcattagttcattatagatatcattacctccattttacagatcaagaaactgaggctcagagaggtg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     849073 179 -   1771730 GGGCGTGAGGAAAGGATTTTGTCAGAACTATGGAAAGTTTGAAATGAGATTGAAGAAAGA---CTAATAGTA-----ATACTTTTTACATTTTTAGAGtatattcatatattttatttcatcattagttcattatagatatcactacacccattacacagattgagaaactgaggctcagagaggtg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     334824 179 -    383796 GGGCCTAAGGAGGGGATTTTGTCAGAACTATGGAAAGTTTGAAATGAGGTTGAAGAAAGA---CTAATAGTA-----ATACTTtttacatttttaaagcatcttcatatattttatttcatcattagttcattatagatatcattacccccattttacagatcaagaaactgaggctcagagaggtg
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               312772 178 + 123392446 GGACCTGGGGAGAGGATTTTGTGAGA-CTCTGTAAAGTTTGAAATGAGGTTAGAGAAGGG---ATAATAATA-----ATGCTTTTTGCATTTTCAGAGAATCTTCATATCTTTTATTTCATCATTCATTCATCAtagacattaatacttccactttacagattaagaaactgagactgaaagaggtg
i micMur3.chr6             I 45 I 2069
s proCoq1.NW_012149775v1     117051 182 -   1411461 GGACCTGGGGAGAGGATTTTGTCAGAGCTCTGTAAAGTTTGAAATGAGGGTGGAGAAGGGATAATAATAATA-----ATACTTTTTGCATTTTTAGAGAATCTTCATATCTTTTATTTCATCATTCATTCATCAtagatattaatactcccactttacagattaagaaactgagactcagagaagtg
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           265272 176 +  18854210 GGGCCTGAGGAGAGGATTTTGTCAGAACTC--TAAAGTTTGAAGTGAGGTTGGAGAAGGGATAGTAAAAAAACAAACAAACTTTTAAAATTTTTCAAGAATCTTCATATCATTTATT-----ATTCATTCATCAtagacatcatcactctcattttacagattaagaaactgagactc----aggtg
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58056158 497 -  94987271 I
e dasNov3.JH580105            13456 1505 -     45298 I
e canFam3.chr35            26306092 587 +  26524999 I

a score=367241.000000
s hg38.chr6_GL000254v2_alt  1437152 29 +   4827813 atgtgagttgtccaagatcacacagctaa
s panTro5.chr6             30306524 29 + 175400573 atgtgagttgtccaagatcacacagctaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30541044 29 + 173848474 atgtgagttgtccaagatcacacagctaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     247972 29 +   2037526 atgtgagttgtccaagatcacacagctaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74915077 29 + 122973662 atgtgagttgtccaagatcacacagctag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30794316 29 + 172585720 atgtgagttgcccgagatcacacagctag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30083835 29 - 170955103 atgtgagttgcccgagatcacacagctag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     333156 29 +   1495729 atgtgagttgcccgagatcacacagctag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     431014 29 -    863181 atgtgagttgcccaagatcacacagctag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29583083 29 -  71996105 atgtgagttgcccgagatcacacagctag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     273581 29 -    735854 atgtgagttgcccgagatcacacagctag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     221167 29 -   1829203 atgtgagttgcccgagatcacagagctag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30393685 29 + 171630274 atatgagttgcccaagatcacacagctag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           217687 29 +    515838 atgtgagttgcccaagatcgcacagctag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     849252 29 -   1771730 atgtgagttgcccaagatcacacagctac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     335003 29 -    383796 atgtgagttgcccaagatcacacagctag
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     117233 29 -   1411461 aagtgagttgcccaaaatctcgcagccag
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           265448 29 +  18854210 aagtgagttgcccaaaatcacacagctaA
i otoGar3.GL873550         C 0 I 597
e micMur3.chr6               312950 2069 + 123392446 I
e mm10.chr17               58056158 497 -  94987271 I
e dasNov3.JH580105            13456 1505 -     45298 I
e canFam3.chr35            26306092 587 +  26524999 I

a score=1565791.000000
s hg38.chr6_GL000254v2_alt  1437181 150 +   4827813 taagAAGGT-------------------------A---------CATTCTCCTCTATACCACAG-AGCACCT-CTTCTGTGTGTGGCATATTACATAGAAAAATGAGATTAGACATTTAG-AAGTTGAGGattctcatcccgcaaac--------acttatggggcactttttatgtgccaggcaacatgctaag
s panTro5.chr6             30306553 150 + 175400573 taagAAGGT-------------------------A---------CATTCTCCTCTATACCACAG-AGCACCT-CTTCTGTGTGTGGCATATTACATAGAAAAATGAGATTAGACATTTAG-AAGTTGAGGattctcatccagcaaac--------acttatggggcactttttatgtgccaggcaatatgctaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30541073 150 + 173848474 taagAAGGT-------------------------A---------CATTCTCCTCTATACCACAG-AGCACCT-CTTCTGTGTGTGGCATATTACATAGAAAAATGAGATTAGACATTTAG-AAGTTGAGGattctcatccagcaaac--------acttatggggcactttttatgtgccaggcaatatgctaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     248001 149 +   2037526 taagAAGGT-------------------------A---------CATTCTCCTCTATACCACAG-AGCACCT-CTTCTGTGTGT-GCATATTACATAGAAAAATGAGATTAGACATTTAG-AAGTTGAGGattctcatccagcaaac--------acttatggggcactttttatgtgccaggcaatatgctaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74915106 150 + 122973662 taagAATGT-------------------------A---------CATTCTCCTCTATACCACAG-AGCACCT-CTTCTGTATGTGGCATATTAAATAGAAAAATGAGATTAGACATTTAG-AAGTTGAGGattctcatccagcaaac--------acttatggggcactttttatgtgccaggcaatatgctaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30794345 151 + 172585720 taagAATGT-------------------------A---------CATTCTCCTCTATACCACAG-AGCACCTGCTTCTGTATGTGGCATATTAAATAGAAAAATGAGATTAGACATTTAG-AAGTTGAGAattctcatccaactaac--------acttatggggcactttttatgtgccaggcaatatgctagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30083864 151 - 170955103 taagAATGT-------------------------A---------CATTCTCCTCTATACCACAG-AGCACCTGCTTCTGTATGTGGCATATTAAATAGAAAAATGAGATTAGACATTTAG-AAGTTGAGAattctcatccaactaac--------acttatggggcactttttatgtgccaggcaatatgctagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     333185 151 +   1495729 taagAATGT-------------------------A---------CATTCTCCTCTATACCACAG-AGCACCTGCTTCTGTATGTGGCATATTAAATAGAAAAATGAGATTAGACATTTAG-AAGTTGAGAattctcatccaactaac--------acttacggggcactttttatgtgccaggcaatatgctagg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     431043 151 -    863181 taagAATGT-------------------------A---------CATTCTCCTCTATACCACAG-AGCACCTGCTTCTGTATGTGGCCTATTAAATAGAAAAATGAGATTAGACATTTAG-AAGTTGAGAattctcacccaactaac--------acttatggggcactttttatgtgccaggcaatatgctagg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29583112 176 -  71996105 taagAATGTTTCTCTATACCACATTCTCTATACCA---------CATTCTCCTCTATACCACAG-AGCACCTGCTTCTGTATGTGGCATATTAAATAGAAAAATGAGATTAGACATTTAG-AAGTTGAGAattctcatccaactaac--------acttatggggcactttttatgtgccaggcaatatgctagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     273610 148 -    735854 taagAATGT-------------------------A---------CATT---CTCTATACCACAG-AGCACCTGCTTCTGTATGTGGCATATTAAATAGCAAAATGAGATTAGACACTTAG-AAGTTGAGAATTCTCATCTaactaac--------acttatggggcactttttatgtgccaggcaatatgctagg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     221196 151 -   1829203 taagAATGT-------------------------A---------CATTCTCCTCTATACCACAG-AGCACCTGCTTCCGTATGTGGCATATTAAATAGAAAAATGAGATTAGACGTTTAG-AGGTTGAGAattctcatccaactaac--------acttatggggcactttttatgtgccaggcaatatgctagg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30393714 160 + 171630274 taagAATGT-------------------------A---------CATTCTCCTCTATACCACAGAGGCAGCTGCTTCTCTATGTAGTGTTTTACATAGAAAAATGAGATTAGACATTTAG-AAGTTGAGGattctcatccagcaaacatatatatatatataaggcactttttatgtgccaggcaatatgctaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           217716 147 +    515838 taa-----T-------------------------A---------CATTCTCCTCTATACCACAGTGGCAGCTGCTTCTGTATGTGGTGTATTACATAGAAAAATGAGATTAAACATTTAG-AAGTTGAGGattctcatccagcaaac--------atatatggggcactttttatgtgccaggcaatatgctaaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     849281 151 -   1771730 taagAATGT-------------------------A---------CATTTTCCTCTATACTACAGTGGCAGCTGCCTCTGTATGTGGTATATGACATAGAAAAATGAGATTAGATGTTTA--AAGTTGAAGattctcatccagcaaac--------atatatggggcactttttatgtgccaggcaatatgctaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     335032 152 -    383796 taagAATGT-------------------------A---------CATTTCCCTCTATAATACAGTGGCAACTGCTTCTGTATGTGGTGTATTACATAGAAAAATGAGATTAGACATTTAG-AAGTTGAGGattctcatccagcaaac--------atatacggggcactttttatgtgccaggcattatgttaaa
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     117262 156 -   1411461 taagAATGT-------------------------AAACGCTCTGCTTTCTCCTTTATACCA------CAGCTACTTCTGTGTGTGGCGTATTAAATAGAAAAGAGAGATTAAGCTTTTAGAAAGTTGAGGATTttcatccaacaagc--------atttatggggcactttttatgtgccaggcggtaagctaag
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           266074 119 +  18854210 GAATAGTAT-------------------------AAATGCTCTACTTTTCCCTTTGTGTCACAGCAGCAGCTGCTTCTGTATA-GGCGTAGTGAATAGAAAAGAGAGATTAAACTTTTAGAAAGTTGAGGATTTTC--------------------TTTAAGGG------------------------------G
i otoGar3.GL873550         I 597 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e mm10.chr17               58056158 497 -  94987271 I
e dasNov3.JH580105            13456 1505 -     45298 I
e canFam3.chr35            26306092 587 +  26524999 I

a score=2711619.000000
s hg38.chr6_GL000254v2_alt  1437331 224 +   4827813 cactgaagatactaagacgccctgctttcaaaagactgaccttctggttaaggagTGATATG----AGTGGTGCAAACCAGGTGGGGGGCGGGGCTGCCCATAGGCTGAGGGCTCCTCTGGGAGAGG-GCAGCTTAGGGAAGCTTTT-----ACAGCGGATGTCTGGGAAGAAGGGAACCACTTCCCCAGTGGGTGGTGGAAGG-GGATAGCAGAGGGCATTTCAGGGAAAAGCA
s panTro5.chr6             30306703 224 + 175400573 cactgaagatactaagacaccctgctttcaaaagactgaccttctggttaaggagtgatatg----agtggtgcaaaccaggtggggggcggggctgcccataggctgagggctcctctgggagagg-gcagcttagggaagctttt-----acaggggttgtctgggaagaagggaaccacttccccagtggatggcggaagg-ggatagcagagggcatttcagggaaaagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30541223 224 + 173848474 cactgaagatactaagacaccctgctttcaaaagactgaccttctggttaaggagtgatatg----agtggtgcaaaccaggtggggggcggggctgcccataggctgagggctcctctgggagagg-gcagcttagggaagctttt-----acaggggatgtctgggaagaagggaaccacttccccagtggatggcggaagg-ggatagcagagggcatttcagggaaaagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     248150 224 +   2037526 cactgaagatactaagacaccctgctttcaaaagactgaccttctggttaaggagtgatatg----agtggtgcaaaccaggtggggggcggggctgcccataggctgagggctcctctgggagagg-gcagcttagggaagctttt-----acaggggatgtctgggaagaagggaaccacttccccagtggatggcggaagg-ggatagcagagggcatttcagggaaaagca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74915256 224 + 122973662 cactgaagatactaagacaccctgctttcaaaagactgaccttctggttaaggagtgatatg----agtggtgcaaaccagatggggggcggggctgcccataggctgagggctcctctgggagagg-gcaggttagggaagctttt-----acaggggatgtctgggaagaagagaaccacttccccagtggatggcggaagg-ggatagcagggggcatttcagggaaaagca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30794496 224 + 172585720 cactgaagatactaagacaccctgttttcaaaagactgactttctggttaaggagtgatatg----aatggtgcaaaccagatgggatgcggggctgcccataggctgacggctcctctgggagagg-acagcttagagaagttttc-----acaggggctgcctgggaagaagggaactacttccccagtggatggcggaagg-ggatagcagagggcatttcaaggaaaagca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30084015 224 - 170955103 cactgaagatactaagacaccctgttttcaaaagactgaccttctggttaaggagTGGTATG----AATGGTGCAAACCAGATGGGGGGCGGGGCTGCCCATAGGCTGACGGCTCCTCTGGGAGAGG-ACAGCTTAGAGAAGTTTTC-----ACAGGGGATGTCTGGGAAGAAGGGAACTACTTCCCCAGTGGATGGTGGAAGG-GGATAGCAGAGGGCATTTCAGGGAAAAGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     333336 224 +   1495729 cactgaagatactaagacaccctgttttcaaaagactgaccttctggttaaggagtgatatg----aatggtgcaaaccagatggggggcggggctgcccataggctgacggctcctctgggagagg-acagcttagagaagttttc-----acaggggctgcctgggaagaagggaactacttccccagtggatggcggaagg-ggatagcagagggcatttcaaggaaaagca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     431194 224 -    863181 cactgaagatactaagacaccctgttttcaaaagactgaccttctggttaaggaatgatatg----aatggtgcaaaccagatggggggcggggctgcccataggctgagggctcctctgggagagg-acagcttagagaagttttc-----acaggggctgtctgggaagaagggaactacttccccagtggatggcggaagg-ggatagcagagggcatttcaaggaaaagca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29583288 224 -  71996105 cgctgaagatactaagacaccctgttttcaaaagactgaccttctggttaaggagtgatatg----aatagtgcaaaccagatggggggcggggctgcccataggctgaaggctcctctgggagagg-acagcttagagaagttttc-----acaggggctgtctgggaagaagggaactacttccccagtggatggcagaagg-ggatagcagagggcatttcagggaaaagca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     273758 224 -    735854 cactgaagatactaagacaccctgttttcaaaagactgaccttctggttaaggagtgatatg----aatggtgcaaaCCAGATGGGGGGCGGGGCTGCCCATAGGCTGAGGGCTCCTCTGGGAGAGG-ACAGCTTAGAGAAGTTTTC-----ACAGGGGATGTCTGGGAAGAAGGGAACTACTTCCCCAGTGGATGGCGGAAGG-GGATAGCAGAGGGCATTTCAGGGAAAAGCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     221347 224 -   1829203 cactgaagatactaagacaccatgttttcaaaagactgaccttctggttaaggagTGATATG----AATGGTGCAAACCAGATGGGGGGTGGGGCTGCCCATAGGCTGAGGGCTCCTCTGGGAGAGA-ACAGCTTAGAGAAGTTTTC-----ACAGGGGATGTCTGGGAAGAAGGGAACTACTTCCCCCATGGATGGCGGAAGG-GGATAGCAGAGGGCATTTCAGGGAAAATCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30393874 222 + 171630274 cactgaagatactaaggcagcctgctttcaaaagactgatcttgtggttaaggagTGATATG----GGTGGTGCAAACCAGATGGCG-GTGAGGCTGCCCATAGGCTGAGGGTTCCTCTGGGAGAGG-GCAGCCTAGGGAAGCTTCT-----ATAGGGAGTGTCTGGGAAGGAAGGAAACCTTTCCCCAGTGGACAGCGGAAGG-GGATGGCAGAGGGCGTTTCAGGCTAAAGC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           217863 223 +    515838 cactgaagatactaaggcagcctgctttcaaaagactgaccttgtggttaaggagTGATATG----GGTGGTGCAAACCAGACATGC-GTGGGGCTGCCCATAGGCTGAGGGCTCCTCTGGGAGAGG-GCAGCCTAGGGAAGCTTTT-----ATAGGGGATGTCTGGGAAGAAAGGAAACATTTCACCAGTGGGTGGTAGAAGG-GGATGGCAGAGGGTATTTCAGGCTAAAGCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     849432 223 -   1771730 cattgaagatactaaggcagcctgctttcaaaagactgatcttgtggttaaggagTGATATG----GGTGGTGCAAACCAGAAGGGG-GTGGGGCTGCCCATAGGCTGAAGGCTCCTCTGTGAGAGG-GCAGCCTAGGGAAGCTTTT-----ATAGGGGATGCCTGGGAAGAAAGGAAACATTTCCCCAGCGAATGGCGGAAGG-GGATGGCAGAGGGCATTTCAGGCTAAAGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     335184 223 -    383796 cactgaagatactaaggcagcctgctttcaaaagactgatcttgtggttaaggagTGATATG----GGTGGTGCAAACCAGACGGGG-GTGGGGCTGCCTGTCGGCTGAGGGCTCCTCTGGGAGAGG-GCAGCCTAGGGAAGCTTTT-----ATAGGGGATGTCTGGGAAGAAAGGAAACATTTCCCCAGTGGATGGCGGAAGG-GGATGGCAGAGGGCATTTCAGGCTAAAGCA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     117418 202 -   1411461 cactgaagatgcTAAGACGATCTG---------------AGCTCTGGTTGAGGAG-GACATG----AGCGGTACAAACCAGACAGGG-----GGCCGCCCAAGGACCGAGGGCTCCTCTGGG-GAGG-GCAGCTTAGGGAAGCTTTT-----ATAGGGGACATCTGAGAAGAAGGAAAACATCCCCCCAGTGGATGGTGGGAGG-GGGTGGCAGAGGGCCTTTCAGGAAAGAGCA
i proCoq1.NW_012149775v1   C 0 I 2121
s otoGar3.GL873550           266193 224 +  18854210 CACAGAAGATGCCAACACAATCTGCTTTCAAACAGCTGAGCCTCCAGTTAAGGAGTGACATC----AGCTGTACTAACCAGACAGAA-----GGCTGCCCAAGGACTGAGGGCTCCTCTGGG-GAGG-GCAGCTTAGGGAAGTTTTTACTTGATTAGGGACATATGAGAAAAAGGGAAACACTTCCCCTGTGGATGGTGGCAGGTAGATGGCAGAGGGCCATTCAGGAAAAAGCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58056655 219 -  94987271 CACCAAGCAGTCTAAGACATGTTGCCTTCCAAAGACTTAGCTACTTGTCAAGAAATGATGTGATATAAGCGAGCAAAACAGATAGGG----GTGTGGCCCAGGGCTAGAGGGCTTCTTTGGGGGGGGAGCAGTTTAGAAAAGCTT-C-----ACAGAGGAAGTCTGGGAA--AGGGAAATG---CACCAGAGGACAGTGGGAGG-AGGCAGGAGAGAGCCTGTCAGGCCAAAGCC
i mm10.chr17               I 497 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e dasNov3.JH580105            13456 1505 -     45298 I
e canFam3.chr35            26306092 587 +  26524999 I

a score=1445331.000000
s hg38.chr6_GL000254v2_alt  1437555 134 +   4827813 AGCAAGCAGAGTGTGTGGGAGAGCTCCAAGGAGTT-------------GAGATCCACAAAAGAGGGATGTGTAGGGAGCTGGATGGAAAAGCTAAAGAAATAATGGGGAGAATAGTGATATTAATTAAATTCGTGATCTGTTTAAAA
s panTro5.chr6             30306927 134 + 175400573 agcaagcagagtgtgtgggagagctccaaggagtt-------------gagatccacaaaagagggatgtgtagggagctggatggaaaagctaaagaaataatggggagaATAGTGATATTAATTAAATTCGTGATCTGTTTAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30541447 134 + 173848474 agcaagcagagtgtgtgggagagctccaaggagtt-------------gagatccataaaagagggatgtgtagggagctggatggaaaagctaaagaaataatggggagaATAGTGATATTAATTAAATTCGTGATCTGTTTAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     248374 134 +   2037526 agcaagcagagtgtgtgagagagctccaaggagtt-------------gagatccacaaaagagggatgtgtagggagctggatggaaaagctaaagaaataatggggagaATAGTGATATTAATTAAATTCGTGATCTGTTTAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74915480 134 + 122973662 agcaagcagagcgtgtgggagagctccaaggagtt-------------gagatccacaaaagagggatgtgtagggagctggatggaaaagctaaagaaataatggggagaACAGTGATATTAATTAAATTCGTGATCTGTTTAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30794720 132 + 172585720 agcaagc--agtgtgtgggagagctccaaggAGTT-------------GAGATCCACAAAAGAGGGATGTGTAGGGAGCTGGGTGGAAAAGCTACAGAAATAATGGGAAGAACAGTGATATTAATTAAATTCATTATCTGTTTAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30084239 132 - 170955103 AGCAAGC--AGTGTGTGGGAGAGCTCCAAGGAGTT-------------GAGATCCACAAAAGAGGGATGTGTAGGGAGCTGGGTGGAAAAGCTACAGAAATAATGGGAAGAACAGTGATATTAATTAAATTCATTATCTGTTTAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     333560 132 +   1495729 agcaagc--agtgtgtggaagagctccaaggAGTT-------------GAGATCCACAAAAGAGGGATTTGTAGGGAGCTGGGTGGAAAAGCTACAGAAATAATGGGAAGAACAGTGATATTAATTAAATTCATTATCTGTTTAAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     431418 132 -    863181 agcaagc--agtgtgtgggagagctccaaggAGTT-------------GAGATCCACAAAAGAGGGATTTGTAGGGAGCTGGGTGGAAAAGCTACAGAAATAATGGGAAGAACAGTGATATTAATTAAATTCATTATCTGTTTAAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29583512 132 -  71996105 agcaagc--agtgtgtgggagagctccaaggAGTT-------------GAGATCCACAAAAGAGGGATGTGTAGGGAGCTGGGTGGAAAAGCTACAGAAATAATGGGAAGAACAGTGATATTAATTAAATTCATTATCTGTTTAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     273982 134 -    735854 AGCAAGCAGAGTGTGTGGGAGAGCTCCAAGGAGTT-------------GAGATCCACAAAAGAGGGATGTGTAGGGAGCTGGGTGGAAAAGCTATAGAAATAATGGGAAGAACAGTGATATTAATTAAATTCATTATCTGTTTAAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     221571 134 -   1829203 AGCAAGCAGAGTGTGTGGGAGAGCTCCAAGGAGTT-------------GAGATCCACAAAAGAGGGGTGTGTAGGGAGCTGGGTGGAAAAGTTACAGAAATAATGGGAAGAACAGTGATATTAATTAAATTCATTATCTGTTTAAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30394096 130 + 171630274 ---AAGCAGAGTGTGTGGGAGAGCATGGAGGAGTT-------------GAGATACACGATGGAGGGATGTGTAGGGAACTAGATGGAAAAGCTAAAGAAA-ATTGGGAAGAACAGTGACATTAATTAGATTCATGATCTCTTTAACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           218086 134 +    515838 AGGAAGCAGAGTGTGTGGGAGAGCTCGGAGGAGTT-------------GAGAACCACAATAGAGGGATGTGTCGGGAACTAGATGGAAAAGCTAAAGAAATATTGGGGAGAACAGTGACATTAAGTAAATTCATGATCTCTTTAAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     849655 134 -   1771730 AGCAAGCAGAGTGTATGGGAGAGCTCAGAGGAGTT-------------GAGATCCACAACGGAGAGATGTGTAGGGAACTAGATTGAAAAGCTGAGGAAATATTGGGGAGAACAGTGACATTAATTAAATTCATGATCTCTTTAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     335407 134 -    383796 GGCAAGCAGAGTGTGTGGGAGAGCTCGGAGGAGTT-------------GAGATCCACAATGGAGGGATGTGTAGGGAACTAGATGGAAAAGCTAAAGAAATATTGGGGAGAACAGTGACATTAATTAAATTCATGATCTCTTTAAAA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           266417 137 +  18854210 CACAAGCA-TGTGTGTGGGAGAGCTCTGAAGAGTTAGGTGTGTTAAAGGAGA---ACAAAAGAGGGATGTGTAGAGGA--GGATGGAGAAGCTAAAGAAAGAACGAGGAGAACAGCGGCATTGA----ATTCATGATCCATTTAAAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58056874 128 -  94987271 AGGAAGCAGAGTGTGTGGGAGAACTGGGTACGTAC-------------AAAGAAAACAAAAGAGGG-CGTGAAGGGAGCTGGAAAGAGAATCTACAAAAGTAATTCGGAG-ACAGTAACATTAA----ATTTATGACCTATTCAAAA
i mm10.chr17               C 0 I 198
e micMur3.chr6               312950 2069 + 123392446 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e canFam3.chr35            26306092 587 +  26524999 I

a score=2242086.000000
s hg38.chr6_GL000254v2_alt  1437689 236 +   4827813 CCATTGCATAGggcaaggcacagtggctcatgcctataatcccagcactttgggagggtgaggcaggaggatcacttagcccaggagtgagagaccagcctgggcaacatagcaagatttgtcccaatgaaaaaaaaTACTAAATGTTT----TTAAAAGGCACAATGCATAGCTGTAATAACAGTTGAGGAGGAATCTTACAACTACAGTGTTAAAGGAGACAAAGGGTGTTTCTTCAT
s panTro5.chr6             30307061 235 + 175400573 CCATTGCATAGggcaaggcacagtggctcatgcctataatcccagcactttgggaggctgaggcaggaggatcacttagcccaggagtgagagaccagcctgggcaacatagcaagatttgtctcaatgaaaaaaa-TACTAAATGTTT----TTAAAAGGCACAATGCATAGCTGTAATAAGAGTTGAGGAGGAATCTTACAACTACAGTGTTAAAGGAGACAAAGGATGTTTCTTCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30541581 235 + 173848474 CCATTGCATAGggcaaggcacagtggctcatgcctataatcccagcactttgggaggctgaggcaggaggatcacttagcccaggagtgagagaccagcctgggcaacatagcaagatttgtctcaatgaaaaaaa-TACTAAATGTTT----TTAAAAGGCACAATGCATAGCTGTAATAAGAGTTGAGGAGGAATCTTACAACTACAGTGTTAAAGGAGACAAAGGATGTTTCTTCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     248508 236 +   2037526 CCATTGCATAGggcaaggcacagtggcttatgcctataatcccagcactttgggaggcagaggcaggaggatcacttagcccaggagtgagagaccagcctgggcaacatagcaagatttgtctcaatgaaaaaaaaTACTAAATGTTT----TTAAAAGGCACAATGCATAGCTGTAATAAGAGTTGAGGAGGAATCTTACAACTACAGTGTTAAAGGAGACAAAGGGTGTTTCTTCAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74915614 235 + 122973662 CCATTGCATAGggcaaggcacagtggctcatgcctataatcccagcactttgggaggctgaggcaggaggatcacttagcccaggagtgagagaccagcctgggcaacatagcaagatttgtctcaatgaaaaaaa-TACTAAATGTTT----TTAAAAGGCACAATGCATAGCTGTAATAAGAGTTGAGGAGGAATCTTACAACTACAGTGTTACAGGAGACAAAGGGTGTTTCTACAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30794852 235 + 172585720 CCATTGCATAGggcaaggcatagtggctcatgcctataatcccggcactttgggaggctgaggcaggaggatcacttagcccatgagtgagagaccagcctgggcaacatagcaagacttgtctcaatgaaaaaaa-TACTAAGTATTT----TTAAAAGGCACAATACATAGCTGTAATAAGAGTTGAGGAGGAATCTTACAACTATAGTGTTACAGGAGACAAAGGGTGTTTCTCCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30084371 235 - 170955103 CCATTGCATAGggcaaggcatagtggctcatgcctataatcccggcactttgggaggctgaggcaggaggatcacttagcccatgagtgagagaccagcctgggcaacatagcaagacttgtctcaatgaaaaaaa-TACTAAGTATTT----TTAAAAGGCACAATACATAGCTGTAATAAGAGTTGAGGAGGAATCTTACAACTATAGTGTTACAGGAGACAAAGGGTGTTTCTCCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     333692 235 +   1495729 CCATTGCATAGggcaaggcatagtggctcatgcctataatcccggcactttgggaggctgaggcaggaggatcacttagcccatgagtgagagaccagcctgggcaacatagcaagacttgtctcaatgaaaaaaa-TACTAAGTATTT----TTAAAAGGCACAATACATAGCTGTAATAAGAGTTGAGGAGGAATCTTACAACTATAGTGTTACTGGAGACAAAGGGTGTTTCTCCAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     431550 235 -    863181 CCATTGCATAGggcaaggcatagtggctcatgcctataatcccggcactttgggaggctgaggtaggaggatcacttagcccatgagtgagagaccagcctgggcaacatagcaagacttgtctcaatgaaaaaaa-TACTAAGTATTT----TTAAAAGGCACAATACATAGCTGTAATAAGAGTTGAGGAGGAATCTTACAACTATAGTGTTACAGGAGACAAAGTGTGTTTCTCCAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29583644 235 -  71996105 CCATTGCATAGggcaaggcatagtggctcatgcctataatcccggcactttgggaggctgaggcaggaggatcacttagcccatgagtgagataccagcctgggcaacatagcaagacttgtctcaatgaaaaaaa-TACTAAGTATTT----TTAAAAGGCACAATACATAGCTGTAATAAGAGTTGAGGAGGAATCTTACAACTATAGTGTTACAGGAGACAAAGGGTGTTTCTCCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     274116 235 -    735854 CCATTGCATAGggcaaggcacagtggctcatgcctataatcccggcactttgggaggctgaggcaggaggatcacttagcccatgagtgagagaccagcctgggcaacatagcaagacttgtctcaatgaaaaCAA-TACTAAGTATTT----TTAAAAGGCACAATACATAGCTGTAATACGAGTTGAGGAGGAGTCTTACAACTATAGTGTTACAGGAGACAAAGGGTGCTTCTCCAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     221705 235 -   1829203 CCATTGCATAGggcaaggcatggtggctcatgcctataatcccagcactttgggaggctgaggcaggaggatcacttagcccatgagtgagagaccagcctgggcaacatagcaagacttgtctcaatgaaaaaaa-TACTAAGTATTT----TTAAAAGGCACAATGCATAGCTGTAATAAGAGTTGAGGAGGAATCTTACAACTATAGTGTTACAGGAGACAAAGGGTGTTTCTCCAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30394226 237 + 171630274 CCATTGCATAGggccaggcacagtggctcatgcctataatcccagcactttgggaggctaaggcaagagcatcacttcgtgcaagagttagaggccagcctgggcagcatagcaagacttgtctcaatg-aaaaaa-aaaTCAACTTTTTTTATTTTAAACCACAGTGCATAGCT-TAATAAGAGTTGAGGAGGCATCTTACAACTATAGTGTTACAGGAGGAAAAGGGTGTTTTGCTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           218220 236 +    515838 CCATTGCATAGggccaggcacagtggctcatgcctataatcccagcactttgggaggctaaggcaagaggatcactttgtctaagagtcagagaccagcctgggcaacacagcaagacttgtctcaatgaaaaaaa-aaaTCCATTTTCTT--TTGAAAAGTACAGTGCATCACT-TAATAAGGGTTGAGGAAGAATCTTACAACTCTAGTGTTACAGGAGGAAAAGGGTGTTTTGCCCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     849789 233 -   1771730 CCATTGCATAGggccaggcacagtggctcatgcctataatcccagcactttgggaggctaaggcaagaggatcactttgtccaagagctagagaccagcctgggcaacatagcaagacttgtctcaatg-aaaaaa-aaaTCAATTTTT----TTGAAAAGTACAGTGCATAGCT-TAATAGGAGTTGAGGAGGAATCTTACAACTATAGTGTTACAGGAGGAAAAGGGTGTTTTGCCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     335541 236 -    383796 CCATTGCATAGggccaggcacagtggctcatgcctataatcccagcactttgggaggctaaggcaagaggatcactttgtccaagagttagagaccagcctgggcaacatagcaagacttgtctcaatgaaaaaaa-aaaTCAATTTTTTT--TTAAAAAGTACAGTGCATAGCT-TAATAAGAGTTGAGGAGGAATCTTACAACTATAGTGTTACAGGAGGAAAAGGGTGTTTTGCCCC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           266554  77 +  18854210 CCATTGCATAGTG-----------------------------------------------------------------------------------------------------------------ATAGAAAGGG-----------------TTAA---------------------------------GAGAGCTCTCACCACTATGGCTTTACAGGATAACAAGGGCGTTTCTCCAT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e mm10.chr17               58057002 198 -  94987271 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e canFam3.chr35            26306092 587 +  26524999 I

a score=1755841.000000
s hg38.chr6_GL000254v2_alt  1437925 161 +   4827813 TATGTTGCGGTGATGGAAA-------CTTAAATGAGATAAGGATATAT---TT-GAGTCTTCCTATATGCCAGATGGCATGCAAAATGTTTTtatatacattatgtaattgaattcat------------------gtaa------cagtgaaaaatagtgaagatgacctatttgggttgacatgag------aagatcta
s panTro5.chr6             30307296 161 + 175400573 TATGTTGCGGTGATGGAAA-------CTTAAATGAGATAAGGATATAT---TT-GAGTCTTCGTATATGCCAGATGGCATGCAAAATGTTTTtatatacattatgtaattgaattctt------------------gtat------cagttaaaaatagtgaagatgacctatttgggttgacatgag------aagatcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30541816 161 + 173848474 TATGTTGCGGTGATGGAAA-------CTTAAATGAGATAAGGATATAT---TT-GAGTCTTCGTATATGCCAGATGGCATGCAAAATGTTTTtatatacattatgtaattgaattctt------------------gtaa------cagttaaaaatagtgaagatgacctatttgggttgacatgag------aagatcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     248744 161 +   2037526 TATGTTGCGGTGATGGAAA-------CTTAAGTGAGATAAGGATATAT---TT-GAGTCTTCCTATATGCCAGATGGCATGCAAAATGTTTTtatatacattatgtaattgaattctt------------------gtaa------cagttaaaaagagtgaagatgacctatttgggttgacatgag------aagatcta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74915849 161 + 122973662 TATGTTGCGGTGATGGGAA-------ATTAAATGAGATAAGGATATAT---TT-GAGTCTTCCTATATGCCAGATGGCATGCAAAATGTTTTtatatacattatgtaattgaattcat------------------gtaa------cagttaaaaatagtgaagatgacctatttgggttgacatgag------aagaccta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30795087 168 + 172585720 TATGTTGCGGTGATGGGAACTTAAATCTTAAATGAGATAAGGATATAT---TT-GAGTCTTCCTATATGCCAGATGGCATGCAAAATGGTTTtatatacattatgtaattgaattcat------------------gtaa------cagttaaaaatagtgaagatgacctatttgggttgacatgag------aagatcta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30084606 168 - 170955103 TATGTTGCGGTGATGGGAACTTAAATCTTAAATGAGATAAGGATATAT---TT-GAGTCTTCCTATATGCCAGATGGCATGCAAAATGGTTTtatatacattatgtaattgaattcat------------------gtaa------cagttaaaaatagtgaagatgacctatttgggttgacatgag------aagatcta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     333927 168 +   1495729 TATGTTGCGGTGATGGGAACTTAAATCTTAAATGAGATAAGGATATAT---TT-AAGTCTTCCTATATGCCAGATGGCATGCAAAATGGTTTtatatacattatgtaattgaattcat------------------gtaa------cagttaaaaatagtgaagatgacctatttgggttgacatgag------aagatcta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     431785 168 -    863181 TATGTTGTGGTGATGGGAACTTAAATCTTAAATGAGATAAGGATATAT---TT-GAGTCTTCCTATATGCCAGATGGCATGCAAAATGGTTTtatatacattatgtaattgaattcat------------------gtaa------cagttaaaaatagtgaagatgacctatttgggttgacatgag------aagatcta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29583879 168 -  71996105 TATGTTGCGGTGATGGGAACTTAAATCTTAAATGAGATAAGGATATAT---TT-GAGTCTTCCTATATGCCAGATGGCATGCAAAATGGTTTTATATACATTGTGTAattgaattcat------------------gtaa------cagttaaaaatagtgaagatgacctatttgggttgacatgag------aagattta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     274351 168 -    735854 TATGTTGCGGTGATGGGAACTTAAATCTTAAATGAGATAAGGATATAT---TT-GAGTCTTCCTATATGCCAGATGGCATGCAAAATGGTTTtatatacattatgtaattgaattcat------------------gtaa------cagttaaaaatagtgaagatgacctatttgggttgacatgag------aagatcta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     221940 168 -   1829203 TATGTTGCAGTGATAGGAACTTAAATCTTAAATGAGATAAGGATATAT---TT-GAGTCTTCCTATATGCCAGATGGCATGCAACATGGTTTtatatacattatgtaattgaattcat------------------gtaa------cagttaaaaatagtgaagatgacctatttgggttgacatgag------aagatcta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30394463 161 + 171630274 TATGTTGCGATGATGGGAG-------CTTCAGTGAGATGAGGAAATAC---tt-gagtcttcctatatgccagatggcatgcaaaacgcctttatatacattatgtaatttaattcAT------------------GTAG------CAGTTAAAAATAGTGAAGATGACCTATTTGAGTTGACATGAG------AAGATCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           218456 161 +    515838 TATGTTGTGGTAATGGGAG-------CTTCAATGATATAAGGAAATAC---TT-GAGACTTTCTATATGCCAGATGGCATGCAAAATGCTTTtatatacattatgtaatgtaattcat------------------gtgg------cagtcaaaaatactgaagatgacctatttgggttgacatgag------aagatcta
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     850022 161 -   1771730 TATGTTGTGGTGACGGGAA-------CTTACATGAGATAAGGAAATAC---tt-gaatcttcctacatgccagatggcatgcaaaatgcttttatatacattatgtaatttaattcAT------------------CTAG------CAGTTAAATATAGTGAAGATGACCTGTTTGGGCTGACATAAG------AAGATCTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     335777 161 -    383796 TATGTTGTGGTGATGGGAA-------CTTAAATGAGATAAGGAAATAC---TT-GAGTCTTCCTATATGCCAGATGGCATGCAAAATGCTTTtatatatattatgtaatttaattcat------------------gtag------cagttaaatatagtgaagatgacctatttgggctgacataag------aagatcta
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           266631 170 +  18854210 TATGTTGGGGTGATAGGAG-------CTCAAATGAaataaagaaacattcatt-gaacattcctatatgccagacggcgtgctaagtgctttcacatacattatgtaatttaactcac------------------aGag------cagtttaaaagaatgaggaagaccaatttgggttgacatgagatctctaagacctc
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58057200 168 -  94987271 TATGCTGCA-----------------GTTAAAAGCAATGAGGAggagc---ttagaacgtagctgtgtggtaga--gcaggca------cttaacctgtatgaagccctggatttcatccccagcaccAAAGCTAAGCAAACAACCCAATAAAAGAGACGGAGGAAAACTCCTGTGGGTTGACATGAG------AAGAGTCC
i mm10.chr17               I 198 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e canFam3.chr35            26306092 587 +  26524999 I

a score=2009242.000000
s hg38.chr6_GL000254v2_alt  1438086 184 +   4827813 taagat-cgtggttaaaagaaaaagtc----agtgcagaa-cattatgtactataaattatgacccatagtaaagaaacacatacaGGGGAAGGGTTTTGGTC------AG-------AGGGAGTACAGAG----CCAGGGCAG-CCAAGAGAAGGAGGTGTGT-CTG---------------AGCCTGGTGCAGGCTG------------C--------------------------GTGCCTAGGGCTGGCACTGAGAGG
s panTro5.chr6             30307457 184 + 175400573 taagat-cgtggttaaaagaaaaagtc----agtgcagaa-cattatgtactataaattatgacccatagtaaagaaacacacacaGGGGAAGGATTTTGGTC------AG-------AGGGAGTACAGAG----CCAGGGCAG-CCAAGAGAAGGAGGTGTGT-CTG---------------AGCctggcgcaggctg------------c--------------------------gtgcctggggctggcgctgAGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30541977 184 + 173848474 taagat-cgtggttaaaagaaaaagtc----agtgcagaa-cattatgtactataaattatgacccatagtaaagaaacacatacaGGGGAAGGATTTTGGTT------AG-------AGGGAGTACAGAG----CCAGGGCAG-CCAAGAGAAGGAGGTGTGT-CTG---------------AGCctggcgcaggctg------------c--------------------------gtgcctggggctggcgctgAGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     248905 184 +   2037526 taagat-cgtggttaaaagaaaaagtc----agtgcagaa-cattatgtactataaattatgacccatagtaaagaaacacatacaGGGGAAGGATTTTGGTC------AG-------AGGGAGTACAGAG----CCAGGGCAG-CCAAGAGAAGGAGGTGTGT-CTG---------------AGCctggcgcaggctg------------c--------------------------gtgcctggggctggcgctgAGAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74916010 182 + 122973662 taagat-cacggttaaaagaaaaagtc----agtgcagaa-cattatgtactataaattatgacccatagtaaagaaacacatacaGGGGAAGGGTTTTGCTC------AG-------AGGGAGTACAGAG----CCAGGGCAG-CCAAGAGAAGGAG--GTGT-CTG---------------AGCCTGGCACAAGCTG------------C--------------------------ATGCCTGGGGATGGTGCTGAGAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30795255 180 + 172585720 taagat-catggttaaaagaaaa--------agtgcagaa-cattatgtgctataaattgtgatccatagtaaagaaacacatacaGGGGAAGGGTTTTGGTT------AG-------AGGGAGTACAGAG----CCAGGGCAG-CCAAGAGAAGGAGGCGTGT-CTG---------------AGCCTGGCACAGGCTG------------C--------------------------GTGCCTGGGGTTGCTGCTGAGAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30084774 180 - 170955103 taagat-catggttaaaagaaaa--------agtgcagaa-cattatgtgctataaattgtgatccatagtaaagaaacacatacaGGGGAAGGGTTTTGGTT------AG-------AGGGAGTACAGAG----CCAGGGCAG-CCAAGAGAAGGAGGCGTGT-CTG---------------AGCCTGGCACAGGCTG------------C--------------------------GTGCCTGGGGTTGCTGCTGAGAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     334095 180 +   1495729 taagat-catggttaaaagaaaa--------agtgcagaa-cattatgtgctataaattgtgatccatagtaaagaaacacatacaGGGGAAGGGTTTTGGTT------AG-------AGGGAGTACAGAG----CCAGGGCAG-CCAAGAGAAGGAGGCGTGT-CTG---------------AGCCTGGCATAGGCTG------------T--------------------------GTGCCTGGGGTTGCTGCTGAGAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     431953 180 -    863181 taagat-catggttgaaagaaaa--------agtgcagaa-cattatgtgctataaattgtgatccatagtaaagaaacacatacaGGGGAAGGGTTTTGGTT------AG-------AGGGAGTACAGAG----CCAGGGCAG-CCAAGAGAAGGAGGCGTGT-CTG---------------AGCCTGGCGCAGGCTG------------T--------------------------GTGCCTGGGGTTGCTGCTGAGAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29584047 180 -  71996105 taagat-catggttaaaagaaaa--------agtgcagaa-cattatgtgctataaattgtgatccatagtaaagaaacacatacaGGGGAAGGGTTTTGGTT------AG-------AGGGAGTACAGAG----CCAGGGCAG-CCAAGAGAAGGAGGCGTGT-CTG---------------AGCCTGGCGCAGGCTG------------C--------------------------GTGCCTGGGGTTGCTGCTGAGAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     274519 180 -    735854 taagat-catggttaaaagaaaa--------agtgcagaa-cattatgtgctataaattgtgatccatagtaaagaaacacatacaGGGGAAGAGTTTTGGTT------AG-------AGGGAGTACAGAG----CCAGGGCAG-CCAAGAGAAGGAGGTGTGT-CTG---------------AGCCTGGCGCAGGCTG------------C--------------------------GTGCCTGGGGTTGCTGCTGAGAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     222108 184 -   1829203 taagat-catggttgaaagaaaaagtc----agtgcagaa-cattatgtgctataaattgtgatccatagtaaagaaacacatacaGGGGAAGGGTTTTGGTT------AA-------AGGCAGTACAGAG----CCAGAGCAG-CCAAGAGAAGGAGGCATGT-CTG---------------AGCCTGGGGCAGGCTG------------C--------------------------GTGCCTGGGGTTGCTGCTGAGAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30394624 184 + 171630274 TAAGAT-CATGGTTAAAAGAAAAAGTC----AGGTCAGAA-CGTTATATACTATGAATTATGATCCACAGTAAAGAAACACATACAGGGGAAGGGTTTTGGTC------AG-------AGGGAGTACAGAG----CCAGGGCAG-CCGAGAGAAGGAGGCGCAT-CTG---------------AGCCTGGTGCAGGCTG------------C--------------------------ATGCCTGGGGCCGGCGCTGAGAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           218617 183 +    515838 taagat-catggttaaaagaaaaagtc----agttcagaa-cattatatactataaattgtgatccacagtaaagaaacaca-AAAGGGGAAGGGTTTTGGTC------AG-------AGGGAGTACAGAG----CCAGGGCAG-CCGAGAGAAGGAGGCACAT-CTG---------------GGTCTGGTGCGGGCTG------------C--------------------------GTGCCTGGGGCCGGCGCTGAGAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     850183 181 -   1771730 TAACAT-TATGGTTAAAAGAAAAAGTC----AGCTCAGAA-CATTATATACTATAAATTATGATCCACAGTAAAGAAACACATACAGGGGAAGGATTTTGGTC------AG-------AGGGAGTACAGAG----CCAGGGTAG-CCGAG---AGGAGGCGCCT-CTG---------------AGCCTGGTGCGGGCTG------------C--------------------------ATGCCTGGGGCCGGCGCTGAGAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     335938 184 -    383796 taacat-catggttaaaagaaaaagtc----agttcagaa-cattatatactataaattatgatccacagtaaagaaacacatacaGGGGAAGGGTTTTGGTC------AG-------AATGATTACAGAG----CCAGGGCAG-CCGAGAGAAGGAGGCGCAT-CTG---------------AGCCTGGTGCAGGCTG------------C--------------------------GTGCCTGGGGCCGGCGCTGAGAGG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           266801 214 +  18854210 taagatccatggttgaaagaaaaagta----agtgcagaa-cattgtgtgcctc--ataatgatccacattagagaaacatacacaGAGGGAGG-TTTGGGTC------AGAAGGAACAGGGAGTGCAAAG----CCCCGGCAGCCCAGGAGAATGCTGTGGGTCCTG---------------AG--GAGCGCGGGCAG------------CTCCGAGGTGGAGGGTGAGGGTGTGAAGTGCCTGGGGCTG-CGCTGAAAGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58057368 221 -  94987271 TAGGACGCACTGATAAAAGAACAAAGCACATGGTTGAAAG-AACTATGTGCCACGAGTTACAGCTCATCCTACAGAAGCTCACACAGGCGATGGCTTTGGTTTGAGGCAAA-------AGGGAGTCTAAAG----CCCAGACAA-CTGTGAC-AGAAGGTACAT-CTGGAGGTGGATGGGAGAGGATTAGTGTGCGTTGACGGTGGCACTTC--------------------------ATGTCTGGGCCTGGTACCGAGAGG
i mm10.chr17               C 0 I 132
s canFam3.chr35            26306679 187 +  26524999 TAAGACCCACGTTTAAAAGAAAAAGCA----GGTGCAGAAGTATTTTGTGCTATGAGCTGTGATCCATATTAAAGAAACACAT----GGGCAGGGTTTTG-TT------AG-------CGGGAACAAGGGGTGTCTGAAGGCAG-CTCAGTGAGCTAGGGATCC-CCG----------------GCCTGGTGAGGATGG--GGT-------C--------------------------CTGACTGGGGCTGGGACTGACACC
i canFam3.chr35            I 587 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I

a score=404825.000000
s hg38.chr6_GL000254v2_alt  1438270 41 +   4827813 GACATGGAGCTTGTCATACTGAGGGCATAACTCA-ATCCTGT
s panTro5.chr6             30307641 41 + 175400573 GACATGGAGCTTGTCATACTGAGGGCATAACTCA-ATCCTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30542161 41 + 173848474 GACATGGAGCTTGTCATACTGAGGGCATAACTCA-ATCCTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     249089 41 +   2037526 GACATGGATCTTGTCATACTGAGGGCATAACTCA-ATCCTGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74916192 41 + 122973662 GACATGGAGCTTGTCATACTGAGGGCATAACTAA-ATCCTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30795435 41 + 172585720 GGTATGAAGCTTGTCATACTGAGGGCATAACTCA-ATCCTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30084954 41 - 170955103 GATATGAAGCTTGTCATACTGAGGGCATAACTCA-ATCCTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     334275 41 +   1495729 GGTATGAAGCTTGTCATACTGAGGGCATAACTCA-ATCCTAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     432133 41 -    863181 GATATGAAGCTTGTCGTACTGAGGGCATAACTCA-ATCCTAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29584227 41 -  71996105 GATATGAAGCTTGTCATACTGAGGGCATAACTCA-ATCCTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     274699 41 -    735854 GGTATGAAGCTTGTCATACTGAGGGCATAACTCA-ATCCTAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     222292 41 -   1829203 GATATGAAGCTTGTCATACTGAGGGCATAACTCA-ATCCTGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30394808 40 + 171630274 GACATGGAGC-GGTCATACTGAGGGCAAAATTCA-ATCCTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           218800 41 +    515838 GACATGGAGCTGGTCATACTGAGGGCAGAACTCA-ATCCTGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     850364 41 -   1771730 CACATGGAGCTGGTCATACTGAGGGCAAAGCTCA-ATCTTGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     336122 41 -    383796 GACACGGAGCTGGTCATACTGAGGGCAAAACTCA-ATCCTGT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           267015 39 +  18854210 C---TGGAGATTGCCGTGCTGAGGGCGGAGCCCAGATCCTGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26306866 19 +  26524999 -------AACGTGCCAT---------------CA-ACCTTGC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e mm10.chr17               58057589 132 -  94987271 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I

a score=1956754.000000
s hg38.chr6_GL000254v2_alt  1438311 189 +   4827813 TACACTAGGCAAGTCTCAGAGAATTTTCAAGTGGAAGTGAAACACACTCTGGTGACACAGGTTGTAGAGATTGTTCTGTCTGCAGGTGG---ATAG--------ATTGGAGGCAGGAGGAGAGCAGTCAGGTAGGAGAG--ATCCCGTGGGGTGGACAAGCCTGGCCCCTGGAAACAGAGTCGGGGGA--GAGGAAGCAAGGGT
s panTro5.chr6             30307682 197 + 175400573 CACACTAGGCAAGTCTCAGAGAATTTTCAAGTGGAAGTGAAACACACTCTGGTGACACAGGTGGTAGAGATTGTTCTGTCTGCAGGTGG---ATAGGTGGATAGATTGGAGGCAGGAGGAGAGCAGTCAGGTAGGAGAG--ATCCCGAGGGGTGGACAAGGCTGGCCCCTGGAGACAGAGTCGGGGGA--GAGGAAGCAAGGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30542202 189 + 173848474 CACACTAGGCAAGTCTCAGAGAATTTTCAAGTGGAAGTGAAACACACTCTGGTGACACAGGTGGTAGAGATTGTTCTGTCTGCAGGTGG---ATAG--------ATTGGAGGCAGGAGGAGAGCAGTCAGGTAGGAGAG--ATCCCGAGGGGTGGACAAGGCTGGCCCCTGGAGACAGAGTCGGGGGA--GAGGAAGCAAGGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     249130 189 +   2037526 TACACTAGGCAAGTCTCAGAGAATTTTCAAGTGGAAGTGAAACACACTCTGGTGACACAGGTGGTAGAGATTGTTCTGTCTGCAGGTGG---ATAG--------ATTGGAGGCAGGAGGAGAGCAGTCAGGTAGGAGAG--ATCCCGAGGGGTGGACAAGGCTGGCCCCTGGAAACAGAGTCGGGGGA--GAGGAAGCAAGGGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74916233 189 + 122973662 TACACTAGGCAAGTCTCAGAGAATTTTCAAGTGGAAGCGAAACACACTCTGATGACACAGGTTGTAGAGATTGTTCTGTCTGCAGGTGG---ATAG--------ATTGGAGGCGGGAGGCGAGCAGTCAGGTAGGAGAG--ACCCCGAGGGGTGAACAAGGCTGGCCCCTGGAAACAGAGTCGGGGGA--GAGGAAGCAAGGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30795476 192 + 172585720 TACATTAGGCAAGTCTCAGAGAGTTTTCAAGTGGAAGTGAAACACACTCTGATGACACAGGTTGTAGAGATTGTTCTGTCTGCAGGTGAAGAATAG--------ATTGGAGACAGGAGGAGAGCAGTCAGGTAGGAGAG--ACCTGAGGGGGTGGACAAGGCTGGCCCCTGGAAATGGAGTCGAGGGA--GAGGAAGCAAGGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30084995 192 - 170955103 TACATTAGGCAAGTCTCAGAGAGTTTTCAAGTGGAAGTGAAACACACTCTGATGACACAGGTTGTAGAGATTGTTCTGTCTGCAGGTGAAGAATAG--------ATTGGAGACAGGAGGAGAGCAGTCAGGTAGGAGAG--ACCCGAGGGGGTGGACAAGGCTGGCCCCTGGAAATGGAGTCGAGGGA--GAGGAAGCAAGGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     334316 192 +   1495729 TACATTAGGCAAGTCTCAGAGAGTTTTCAAGTGGAAGTGAAACACACTCTGATGACACAGGTTGTAGAGATTGTTCTGTCTGCAGGTGAAGAATAG--------ATTGGAGACAGGAGGAGAGCAGTCAGGTAGGAGAG--ACCCGAGGGGGTGGACAAGGCTGGCCCCTGGAAATGGAGTCGAGGGA--GAGGAAGCAAGGGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     432174 192 -    863181 TACATTAGGCAAGTCTCAGAGAGTTTTCAAGTGGAAGTGAAACACACTCTGATGACACAGGTTGTAGAGATTGTTCTGTTTGCAGGTGGAGAATAG--------ATTGGAGACAGGAGGAGAGCAGTCAGGTAGGAGAG--ACTTGAGGGGGTGGACAAGGCTGGCCCCTGGAAATGGAGTCGAGGGA--GAGGAAGCAAGGGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29584268 192 -  71996105 TACATTAGGCAAGTCTCAGAGAGTTTTCAAGTGGAAGTGAAACACACTCTGATGACACAGGTTGTAGAGATTGTTCTGTCTGCAGGTGGAGAATAG--------ATTGGAGGCAGGAGGAGAGCAGTCAGGTAGGAGAG--ACCCGAGGGGGTGGACAAGGCTAGCCCCTGGAGATGGAGTCAAGGGA--GAGGAAGCAAGGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     274740 192 -    735854 TACATTAGGCAAGTCTCAGAGAGGTTTCAAGTGGAAGTGAAACACACTCTGATGACACAGGTTGTAGAGATTGTTCTGTCTGCAGGTGGAGAATAG--------ATTGGAGGCAGGAGGAGAGCAGTCAGGTAGGAGAG--ACCCGAGGGGGTGGACAAGGCTGGCCCCTGGAAATGGAGTCGAGGGA--GAGGAAGCAAGGGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     222333 192 -   1829203 TACGTTAGGCAAGTCTCAGAGAGTTTTCAAGTGGAAGTGAAACACACTCTGATGACACAGGTTGTAGAGATTGTTCTGTCTGCAGGTGGAGAATAG--------ATTGGAGACAGGAGGAGAGCAGTCAGGTAGGAGAG--ACCCGAGGGGGTGGACAAGGCTGGCCCCTGGAAATGGAGCCGAGGGA--GAGGAAGCAAGGGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30394848 190 + 171630274 TTCACTAGGCAAGTCT--GAGAGTTTTCAAGTGGAAGCGAAGCACACTCTGAGGACGCAGGTTGTAGAGACTGTTCTGGCTGCAGGTGGGGAATGG--------ATTGGAGGCAGGAGGAAAGCAGTCAGGTAGGAGAC--ACCCCGAGGGCTGCACAAGGCTGGACCCTGGGAACGAAGTAGAGGGA--GAGGAAGCAAGGGT
i calJac3.chr4             C 0 I 330
s saiBol1.JH378341           218841 183 +    515838 TTCACTAGGCAAGTCTCAGAGAGTTTTCAAGTGGAAGCAAAACATACTCTGA---------TTGTAGAGACTGTTCTAGCTGCAGGTGGGGAACAG--------ATTGGAGGCAGGAGGAGAGCAGTCAGGTAGGAGAC--ACCCCGAGGGCTGCATAAGGCCGGACCCTGGGAACGAAGTTGCAGGA--CAGGAAGCAAGGGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     850405 190 -   1771730 TTCATTAGGCAAGCCTCAGAGAGTTTTCAAGTGGAAGCGAAAC--ACTCTGATGACACAGGCTGTAGAGACTGTTCTGGCTGCAGGTGGGGAACAG--------ATTGGAGGCAGGAGGAGAGCAGTCAGGTAGGAGAT--ACCCCGAGGGCCGCACAAGGCTGAACCCTGGGAACGAAGTCCCGGGA--CAGGAAGCAAGGGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     336163 192 -    383796 TTCACTAggcaagtcttagagagttctcaagtggaagcgaaacacactctgatgacgcaggttgtagagattgttctggctgcaggtggggaatgg--------attggaggCAGTAGGAGAGCAGTCAGGTGGGAGAC--ACCCCGAGGGCTGCACAAGACTGGACCCTGGGAACGAAGTCGTAGGG--GAGGAAGCAAGGGT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           267054 179 +  18854210 TACC--------------GAGAATTTTTAAGAAGGGAAGACACACACTCTGATGACACGTGTCGTAGAGGTTGTTCAGCCCGCAGGTGGAAAATGG--------ATTGGAGGCGGGAGGGGAAC---CAGTTAGGAGTGGAGCTCACAGGGCTGCACAGGGTTGAAGGGTGGGAATAGGAACCGCAAATCGCACAGCCAAGGGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58057721 169 -  94987271 tactacaggtacagcccagACGGTTTCAAAGTGTGGCTGAAATGCAGTCTGACTAAACACGTTACAGTGA---TTCTGGCTCCAGGTAGAGAGCAG--------ATGGGTGG----------------GGGTGTGAGAG--AGCAGAAGGG-TGCACGAGGCTGGGCCGTGGGAA---AGCAAAGAGG--GAGGAAGGAAGTGT
i mm10.chr17               I 132 C 0
s canFam3.chr35            26306885 132 +  26524999 --TCTCAGGCCAATCCCAGAGAGCTCCTAGTGGGAAG----AAACAGTCTGATTAAACTTGTTCCAGGGGTGGTCCCGACTGTGGGGGA-----AG--------------------------CCAGTGAGGGCTGGGCC--ACC---------------GGCTGGGCCATGGGAA---------AGGA--GAGGAGG-------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I

a score=1302443.000000
s hg38.chr6_GL000254v2_alt  1438500 124 +   4827813 GAGAAACTGGGCTGAGGAAATGAGTGGGTGACAGATCTTCACATGGCTGGTAGGGGGAAAAAAAAGGAACACAG---AACACAATTAGATTATTTTCAGGATTTTCATCGCAGTTATATATGCAAAT
s panTro5.chr6             30307879 123 + 175400573 GAGAAACTGGGCTGAGGAAATGAGTGGGTGACAGATCTTCACATGGCTGGTAGGGG-AAAAAAAAGGAACACAG---AACACAATTAGATTATTTTCAGGATTTTCATCGCAGTTGTATATGCAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30542391 123 + 173848474 GAGAAACTGGGCTGAGGAAATGAGTGGGTGACAGATCTTCACATGGCTGGTAGGGG-AAAAAAAAGGAACACAG---AACACAATTAGATTATTTTCAGGATTTTCATCGCAGTTGTATATGCAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     249319 124 +   2037526 GAGAAACTGGGCTGAGGAAATGAGTGGGTGACAGACCTTCACATGGCTGGTAGGGGAAAAAAAAAGGAACACAG---AACACAATTAGATTATTTTCAGGattttcatcgcagttgtatatgcaaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74916422 123 + 122973662 GAGAAACTGGGCTGAGGAAATGAGTGGGTGACAGATCTTCACATGGCTGGTAGGGA-AAAAAAAAGGAACACGG---AACACAATTAGATTATTTTCAAGattttaatcgcagttatacatgcaaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30795668 124 + 172585720 GAGAAATTGGGCTGAGGAAGTGAGTGGGTGACAGATCTTCACATGGCTGGTTGGGGGGGAAAAAAGGAACACAG---AATACAATTAGATTATTTTCAGGattttaatcgcagttatacatgcaaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30085187 124 - 170955103 GAGAAATTGGGCTGAGGAAGTGAGTGGGTGACAGATCTTCACATGGCTGGTTGGGGGGGAAAAAAGGAACACAG---AATACAATTAGATTATTTTCAGGattttgatcgcagttatacatgcaaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     334508 124 +   1495729 GAGAAATTGGGCTGAGGAAGTGAGTGGGTGACAGATCTTCACATGGCTGGTTGGGGGGGGGAAAAGGAACACAG---AATACAATTAGATTATTTTCAGGattttaatcgcagttatacatgcaaat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     432366 124 -    863181 GAGAAATTGGGCTGAGGAAGTGAGTGGGTGACAGATCTTCACATGGCTGGTTGGTGGGGAAAAAAGGAACACAG---AACACAATTAGATTATTTTCAGGattttaatcgcagttatacatgcaaat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29584460 124 -  71996105 GAGAAATTGGGCTGAGGAAGTGAGTGGGTGACAGATCTTCACATGGCTGGTTGGGGGGGGGAAAAGGAACACAG---AATACAATTAGATTATTTTCAGGattttaattgcagttatacatgcaaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     274932 124 -    735854 GAGAAATTGGGCTGAGGAAGTGAGTGGGTGACAGATCTTCACATGGCTGGTTAGGGGGGAAAAAAGGAACACAG---AACACAATTAGATTATTTTCAGGattttaatcgcagttatacatgcaaat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     222525 124 -   1829203 GAGAAATTGGGCTGAGGAAGTGAGTGGGTGACAGATCTTCACATGGCTGGTTGGAGGGGAAGAAAGGAACACAG---AACACAATTAGATTATTTTCAGGattttaatcacagttatacatgcaaat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30395368 122 + 171630274 GAAAAGCTAGGCTGAGGAAGTGAGTGTGCAACAGATCTTGACATGGCTGGTAGGGG--AAAGAAAGGAACACAG---AACACAATTAGATTATTTTCAAGattttaatagcagttacacatgtaaat
i calJac3.chr4             I 330 C 0
s saiBol1.JH378341           219024 122 +    515838 GAAAAGCTGGGCTGAGGAAGTGAGTGGGCAACAGATCTTGACATGGCTGGTAGGGG--AAAGAAAGGAGCACAG---AACACAATTCGATTATTTTCAAGATTTTTATAGCAGTTACACATGCAAAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     850595 122 -   1771730 GAAAAGCTGGGCTGAGGAAGTGAGTGGGCAACAGATCTTGACGTGGCTGGTAGGGG--AAAGAAAGGAACACAG---AACACAATTCGATTATTTTCAAGATTTTAATAGCAGTTACACATGCAAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     336355 122 -    383796 GAAAAGCTAGGCTGAGGAAGTGAGTGGGCAACAGATCTTGACATGGCTGGTAGGGA--AAAGAAAGGAACACAG---AGCACAATTAGATTATTTTCAAGATTTTCATAGCAGTTACACATGCAAAT
i aotNan1.NW_018496904v1   C 0 I 40
s otoGar3.GL873550           267233 100 +  18854210 GACGACCCGGTTTGAGG-GGTGAGGGGGCGG--------------------------AACAAAAAGGAACACAACACAACACAACTAGATAATTTTCAGGATCTTAACCAAAGTTACACGTGCAAAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58057890 115 -  94987271 GTGAATCTCATCTGAAGGGGTGGGTGAGCGGTGGATC-CCTCCTGGCTGG-------GGGCATAAGGACTACAT---AGCACAGTT-GATTATTTTTAGAATTTGAATAGAAGTAATATGTGGAAAT
i mm10.chr17               C 0 I 21
s canFam3.chr35            26307017  90 +  26524999 -AGAA---------AAGGAGTGAGTGGGAAG----------CACGGCTGATGGGAC--------AGAAACTCA----AACAGAAGTAA---TTTTTCAGGatttgaat--cagttatacatgctcat
i canFam3.chr35            C 0 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I

a score=170282.000000
s hg38.chr6_GL000254v2_alt  1438624 17 +   4827813 AAAAAGTTAAACAAGTT
s panTro5.chr6             30308002 17 + 175400573 AAAAAGTTAAACAAGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30542514 17 + 173848474 AAAAAGTTAAACAAGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     249443 17 +   2037526 aaaaagttaaacaagtt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74916545 17 + 122973662 aaaaagttaaacaagtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30795792 17 + 172585720 aaaaagtcaaacaagta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30085311 17 - 170955103 aaaaagtcaaacaagta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     334632 17 +   1495729 aaaaagtcaaacaagta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     432490 17 -    863181 aaaaagtcaaacaagta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29584584 17 -  71996105 aaaaagtcaaacaagta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     275056 17 -    735854 aaaaagtcaaacaagta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     222649 17 -   1829203 aaaaagtcaaacaagta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30395490 17 + 171630274 aaaaagttaaaaaatta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           219146 17 +    515838 AAAAAGTTAAACAATTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     850717 17 -   1771730 AAAAAGTTAAACAATTA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           267333 17 +  18854210 GAAAACTCAAGTAATTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58058026 17 -  94987271 AAGGAACTAGAAAAGCA
i mm10.chr17               I 21 I 42
s canFam3.chr35            26307107 17 +  26524999 agaaagtcaaataatta
i canFam3.chr35            C 0 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e aotNan1.NW_018496904v1     336477 40 -    383796 I

a score=286747.000000
s hg38.chr6_GL000254v2_alt  1438641 31 +   4827813 GATGAGTTAATTTTTTAAAA-------TGGC----AGCcctc
s panTro5.chr6             30308019 28 + 175400573 GA---GTTAATTTTTTAAAA-------TGGC----AGCcctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30542531 28 + 173848474 GA---GTTAATTTTTTAAAA-------TGGC----AGCcctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     249460 28 +   2037526 ga---gttaattttttaaaa-------tggc----agccctc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74916562 31 + 122973662 gatgagttaattttttaaaa-------tggc----agccctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30795809 31 + 172585720 gatgagttaatttttttaaa-------cggc----agccctc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30085328 31 - 170955103 gatgagttaatttttttaaa-------cggc----agccctc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     334649 31 +   1495729 gatgagttaatttttttaaa-------cggc----agccctc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     432507 31 -    863181 gatgagttaatttttttaaa-------cggc----agccctc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29584601 31 -  71996105 gacgagttaatttttttaaa-------cggc----agccctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     275073 31 -    735854 gatgagttaatttttttaaa-------cggc----agccctc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     222666 31 -   1829203 gatgagttaatttttttaaa-------cggc----agccctc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30395507 31 + 171630274 gatgggttaattttttaaaa-------tagc----agcccta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           219163 31 +    515838 GATGGGTTAATTTTTTAAAA-------TAGC----AGCCCTC
i saiBol1.JH378341         C 0 M 2345
s cebCap1.NW_016107755v1     850734 31 -   1771730 GATGGGTTAATTCTTTAAAA-------TGGC----AGCCCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     336517 31 -    383796 GATGGGTTAATTTTTTTAAA-------TGGC----AGCCCTC
i aotNan1.NW_018496904v1   I 40 C 0
s otoGar3.GL873550           267350 33 +  18854210 -----GATAGTTAATTAGAAAAATTTCCAGC----AGCCCAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58058085 35 -  94987271 GGGGGGTTATTTTATTTATT-------TTGCATTTAATTCTC
i mm10.chr17               I 42 I 7
s canFam3.chr35            26307124 26 +  26524999 ----ggttaatgagagaaac-------tagc----agctcc-
i canFam3.chr35            C 0 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I

a score=1447768.000000
s hg38.chr6_GL000254v2_alt  1438672 152 +   4827813 accc----------------ccatctccactactttcaactctt--------t-tagctgttttggtg----------------------------------------ttcaccttcacatctgtaa---atacaaggattatattattac--tatttgctcttctaattttaggcattatctattattgatttgctgttatcaaagatatagctttttctt
s panTro5.chr6             30308047 152 + 175400573 accc----------------ccatctccactactttcaactctt--------t-tagctgttttggtg----------------------------------------ttcaccttcacatctgtaa---atacaaggattatattattac--tgtttgctcttctaattttaggcattatctattattgatttgctgttatcaaagatatagctttttctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30542559 152 + 173848474 accc----------------ccatctccactactttcaactctt--------t-tagctgttttggtg----------------------------------------ttcaccttcacatctgtaa---atacaaggattatattattac--tgtttgctcttctaattttaggcattatctattattgatttgctgttatcaaagatatagctttttctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     249488 152 +   2037526 accc----------------ccatctccactactttcaactctt--------t-tagctgttttggtg----------------------------------------ttcaccttcacatctgtaa---atacaaggattatattattac--tatttgctcttctaattttaggcattatctattattgatttgctgttatcaaagatatagatttttctt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74916593 124 + 122973662 actc----------------ccttctctactgctttcaactc----------t-tagctgttttggtg----------------------------------------ttcgccttcacagctgtaa---atacaaggattatattattac--tatttgctcttctaattttaggcattgtgtattATCAATTTGC--------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30795840 152 + 172585720 accc----------------ccacctccactactttcaactctt--------t-tagctgttttggcg----------------------------------------ttcaccttcacatctgtaa---atacgaggattatattattac--tatttactcttctaattttaggcgttatctattattgattttctgttatgaaagatataactttttctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30085359 152 - 170955103 accc----------------ccacctccactactttcaactctt--------t-tagctgttttggcg----------------------------------------ttcaccttcacatctgtaa---atacgaggattatattattac--tatttactcttctaattttaggcgttatctattattgattttctgttatgaaagatataactttttctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     334680 152 +   1495729 accc----------------ccacctccactactttcaactctt--------t-tagctgttttggtg----------------------------------------ttcaccttcacatctgtaa---atatgaggattatattattac--tatttactcttctaattttaggcgttatctattattgattttctgttatgaaagatataactttttctt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     432538 152 -    863181 accc----------------ccacctccactactttcaactctt--------t-tagctgttttggcg----------------------------------------ttcaccttcacatctgtaa---atacaaggatgatattactac--tatttactcttctaactttaggcgttatctattattgattttctgttatgaaagatataactttttctt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29584632 152 -  71996105 accc----------------ccatctccactactttcaactctt--------t-tagctgttttggcg----------------------------------------ttcaccttcacatctgtaa---atacgaggatgatattattac--tatttactcttctaattttaggcgttatctattattgattttctgttatgaaagatATAACTTTTTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     275104 152 -    735854 accc----------------ccatctccactactttcaactctt--------t-tagctgttttgacg----------------------------------------ttcaccttcacatctgtaa---atacgaggattatattattac--tatttactcttctaattttaggcattatctattattgattttctgttatgaaagatACAACTTTTTCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     222697 152 -   1829203 accc----------------ccatctccagtactttcaactctt--------t-tagctgttttggcg----------------------------------------ttcaccttcacatctgtaa---atacgaggattatgctgttac--tatttactcttctaattttaggcgttatctattattgattttctgttatgaaagatataactttttctt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30395538 152 + 171630274 accc----------------tcatctccactactttaaactctt--------t-tagctgtcttggtg----------------------------------------ttcaccttcacatctgtga---atacaaggattatattagtac--tattcgctcttctaattttaggcgttatctattatttatttgctgttatgaaatatatagctttttctt
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     850765 152 -   1771730 ACCC----------------CCATCTCTGctactttcaactctt--------t-tagctgttttggtg----------------------------------------ttcaccttcacatctgtga---atacaaggattatgttattac--tatttgcttttctaattttaggcattatttattatttatttgctgttatgaaagatatagctttttctt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     336548 152 -    383796 AGCC----------------CCATCTGCactactttcaactctt--------t-tagccgttttggtg----------------------------------------ttcaccttcacatctgtga---agacaaggattatattattac--tatttcctcttctaattttaggcgttatctattatttatttgctgttatgaaagatatagctttttctt
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           267383 161 +  18854210 ATCC----------------CCATCTCCACTCCTTTAAACTCCTGTATTTCAT-TTGCTGT-TTGGTG----------------------------------------TTTGCCTCCATGTCTGTTATGTGAACCAGGATTATATTATTGCTGTATATGCTCCTTCAATTTCAGGCTTTACCTACT---GATTTGCTCTTAACAAAGATACAGCtttttttt
i otoGar3.GL873550         C 0 I 290
s mm10.chr17               58058127 201 -  94987271 ACCTATCAGAATTATATTAGTTGTCTCTAGTACTTTCAACTCTT--------T-TATCTGATTTGGGGTGTTTTATTTTTTTGTTTGTTTGTTTTGTTTTGTTTGGAATTTAATTCTCAGCCTGTAA---CTATCAGAGTTATATT-TTAC--CATTAGTCCTTTCAATTTT---CACTAT---TGGTGGATTTACTTTTAGGAAAAATATAGCCACTAAAT
i mm10.chr17               I 7 I 6
s canFam3.chr35            26307150 148 +  26524999 accc----------------ccaccctcaccaccttgggtgctc--------cgtggttttgcttgtg--------------------------------------gctgtgcctgcaaagctggga---acaccaaggt----ttgttac--tgcatactcctgcgatcgtaggcatcacctgtt---gattaacttttatcaaaaatacagcttttcttt
i canFam3.chr35            C 0 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e saiBol1.JH378341           219194 2345 +    515838 M

a score=-1081.000000
s hg38.chr6_GL000254v2_alt  1438824 2 +   4827813 gt-
s panTro5.chr6             30308199 2 + 175400573 gt-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30542711 2 + 173848474 gt-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     249640 2 +   2037526 gt-
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30795992 2 + 172585720 at-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30085511 2 - 170955103 at-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     334832 2 +   1495729 at-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     432690 2 -    863181 at-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29584784 2 -  71996105 AT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     275256 2 -    735854 AT-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     222849 2 -   1829203 at-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30395690 2 + 171630274 tt-
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     850917 2 -   1771730 tt-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     336700 2 -    383796 tt-
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58058334 2 -  94987271 AA-
i mm10.chr17               I 6 C 0
s canFam3.chr35            26307298 2 +  26524999 -tt
i canFam3.chr35            C 0 I 137
e micMur3.chr6               312950 2069 + 123392446 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e saiBol1.JH378341           219194 2345 +    515838 M
e otoGar3.GL873550           267544 290 +  18854210 I
e nomLeu3.chr1a            74916717 0 + 122973662 C

a score=37991.000000
s hg38.chr6_GL000254v2_alt  1438826  9 +   4827813 aaccac-------------------aac------------------
s panTro5.chr6             30308201  9 + 175400573 aaccac-------------------aac------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30542713  9 + 173848474 aaccac-------------------aac------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     249642  9 +   2037526 aaccac-------------------aac------------------
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30795994  9 + 172585720 taccac-------------------aac------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30085513  9 - 170955103 taccac-------------------aac------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     334834  9 +   1495729 taccac-------------------aac------------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     432692  9 -    863181 aaccac-------------------aac------------------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29584786  9 -  71996105 AACCAC-------------------AAC------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     275258  9 -    735854 AACCAC-------------------AAC------------------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     222851  9 -   1829203 aaccac-------------------aac------------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30395692  9 + 171630274 aaccac-------------------agt------------------
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     850919  9 -   1771730 aACCAC-------------------AAT------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     336702  9 -    383796 aACCAC-------------------AGT------------------
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58058336  6 -  94987271 AATTGT----------------------------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26307437 46 +  26524999 aaccactgagccactcaggcatcccagctttcattttttcaccacc
i canFam3.chr35            I 137 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e saiBol1.JH378341           219194 2345 +    515838 M
e otoGar3.GL873550           267544 290 +  18854210 I
e nomLeu3.chr1a            74916717  0 + 122973662 C

a score=1762485.000000
s hg38.chr6_GL000254v2_alt  1438835 206 +   4827813 ctcacttgatcccacaaacacatatcctcactattcccaCTGTCCCTGGTTTATAGCTATTTCAAATacacacacac------acac----------acacacacacacacacacacacaTTTCTATGTGTA--TAAAACACAGATATGTAAATACACACAAACATGTCCTGAAGGATCAAATCAAACTAGGATTCAGGAAGATCATAGCTAAAGAAGACTTTC
s panTro5.chr6             30308210 194 + 175400573 ctcacttgatcccacaaacacatatcctcactattcccaCTGTCCCTGGTTTATAGCTATTTCAAA------------------AAT----------acacacacacacacacacacacaTTTCTATGTGTA--TAAAACACAGATGTGTAAATACACACAAACATGTCCTGAAGGATCAAATCAAACTAGGATTCAGGAAGATCATAGCTAAAGAAGACTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30542722 194 + 173848474 ctcacttgatcccacaaacacatatcctcactattcccaCTGTCCCTGGTTTATAGCTATTTCAAA------------------AAT----------acacacacacacacacacacacaTTTCTATGTGTA--TAAAACACAGATGTGTAAATACACACAAACATGTCCTGAAGGATCAAATCAAACTAGGATTCAGGAAGATCATAGCTAAAGAAGACTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     249651 206 +   2037526 ctcacttgatcccacaaacacatatcctcactattcccaCTGTCCCTGGTTTATAGCTATTTCAAAAATacacacac------acac----------acacacacacacacacacacacaTTTCTATGTGTA--TAAAACACAGATGTGTAAATACACACAAACATGTCCTGAAGGATCAAATCAAACTAGGATTCAGGAAGATCATAGCTAAAGAAGACTTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74916717 186 + 122973662 ------TGATCCCACAAACACATATCCTCACTATTCCCACTGTCCCTGGTTTATAGCTATTTCaaa--------------------a----------atacatacacacacacacatatatttctatgtgta--taaaacacagatgtgtaaatacacagaaacatgtcctgaaggatcaaatcaaactAGGATTCAGTAAGATCATAACTAAAGAAGACTTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796003 212 + 172585720 ctcacttggtcccacaaacacacatccTCACTATTTCCACTGTCCCTGGTTTATAGCTATTTCAAAAATacatacat------acat----acacacacacacaaacacacacacacacaTTTCTATGTGTA--TAAAACACAGATGTGTAAATACACAGAAACATGTCCTGAAGGATCAAATCAAAGTAGGATTCAGGAAGATCATAGCTAAAGAAGACTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30085522 212 - 170955103 ctcacttggtcccacaaacacacatccTCACTATTTCCACTGTCCCTGGTTTATAGCTATTTCAAAAATacatacat------acat----acacacacacaaacacacacacacacacaTTTCTATGTGTA--TAAAACACAGATGTGTAAATACACAGAAACATGTCCTGAAGGATCAAATCAAAGTAGGATTCAGGAAGATCATAGCTAAAGAAGACTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     334843 214 +   1495729 ctcacttggtcccacaaacacacatccTCACTATTTCCACTGTCCCTGGTTTATAGCTATTTCAAAAATACATACAT------ACAT--acacacacacacacacacacacacacacacaTTTCTATGTGTA--TAAAACACAGATGTGTAAATACACAGAAACATGTCCTGAAGGATCAAATCAAAGTAGGATTCAGGAAGATCATAGCTAAAGAAGACTTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     432701 216 -    863181 ctcacttggtcccacaaacacatatccTCACTATTTCCACTGTCCCTGGTTTATAGCTATTTCAAAAATACATACAT------ACATacacacacacacacacaaacacacacacacacaTTTCTATGTGTA--TAAAACACAGATGTGTAAATACACAGAAACATGTCCTGAAGGATCAAATCAAAGTAGGATTCAGGAAGATCATAGCTAAAGAAGACTTTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29584795 214 -  71996105 CTCACTTGGTTCCACAAACACATATCCTCACTATTTCCACTGTCCCTGGTTTATAGCTATTTCAAAAATACATGCAT------ACAT--acacacacacacacaaacacacacacacacaTTTCTATGTGTA--TAAAACACAGATGTGTAAATACACAGAAACATGTCCTGAAGGATCAAATCAAAGTAGGATTCAGGAAGATCATAGCTAAAGAAGACTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     275267 220 -    735854 CTCACTTGGTCCCACAAACACATATCTTCACTATTTCCACTGTCCCTGGTTTATAGCTATTTCAAAAATACATACATacacacacac--acacacacacacacaaacacacacatacacaTTTCTATGTGTA--TAAAACACAGATGTGTAAATATACAGAAACATGTCCTGAAGGATCAAATCAAAGTAGGATTCAGGAAGATCATAGCTAAAGAAGACTTTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     222860 196 -   1829203 ctcacttggtcccacaaacacatatccTCACTATTTCCACTGTCCCTGGTTTATAGCTATTTCAAAAATacatacac------acac--------------------acgcacacacacacTTCCGTGTGTA--TAAAACACAGATGTGTAAATGCACAGAAACATGTCCTGAAGGATCAAATCAAACTAGGATTCAGGAAGATCATAGCTAAAGAAGACTTTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30395701 183 + 171630274 ctcacttggtcccacaaacacatttcctcactattcccactgtccttggtctatagctatttcaaaaAT--------------AC--------------------ATACACATACATATATTTCTATGTGTG--TAAAAC-TATATATGTGAATACACGGAAACGTGTCCTGAAGC----AATCAAAGTAGGACTCAGGAAGATCATAGCTAAAGAAGACTTTG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     850928 189 -   1771730 CTCACTTGGTCCCACAAAAACATATTGTCACTATTCCCACTGTCCTTGGTCTATAGCTATTTCAAAAAT--------------ACGT------------------ACACACACACATATATTTCTATGTGTG--TAAAAC-TATATATGCAAATACACAGAAATGTGTCCTGAAGCACCAAATCAAACTAGGATTCAGGAAGATCGTAGCTAAAGAAGACTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     336711 189 -    383796 CTCACTTGGTCCCACAAAAACATATCCTGACTACTCCCACTGTCCTTGGTCTACAGCTATTTCAAAAAT--------------ACAT------------------ACACACACACATATATTTATATGTGTG--TAAAAT-TATGTATGTAAATACACAGAAACATGTCCTGAAGCACCAAATCAAGGTAGGATTCAGGAAGATTATAAGTAAAGAAGACTTTT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           267834 188 +  18854210 CTCACTTGATCC-----ACAAATATCTTCATCATCCCCATTATGCTCACTTTATAGCTATTTCAACAATACAT----------ATGT------------------GCACATACATATTTATTTCTATGTTTAATTAAA---TATGCATGTAAATACAAAGAAAAGTGTCACAAAGGACCAAATCAAAGTagaattcagggagatagtagctaacggagatcttc
i otoGar3.GL873550         I 290 C 0
s mm10.chr17               58058342 174 -  94987271 CTTACTTAATC-----AACAGACATTTTT-CCATCCACATTATC--TTACTTATAGCTATTTCAAAAGCATCTATAT------CTAT----------GCTGATTAATGCACATAAACACAT---------GA--AAAGAAACAGA---------------AAAAAGGTCCCCTGAGACCTCATCCAATTGTTATTCAGGAAGACAGTAGTTAAAGGAGTTCTTC
i mm10.chr17               C 0 I 294
s canFam3.chr35            26307483 196 +  26524999 atctcttggtc--ataaataggccccttcaccctccgcactatactcattttatagctatttcatgaGTGCTTGTGC------ACAC------------ACATTCACGCACATGTATCTCCCTCCATATGTG--CACAGC-TAGTTGGGTAGATGCAGAGA----CGTCCTGAGGTACCACGTCAGAGCAGGTTCCCGGG-GACTGTGGCTGAGAGAGACTTTA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e saiBol1.JH378341           219194 2345 +    515838 M

a score=27873.000000
s hg38.chr6_GL000254v2_alt  1439041 5 +   4827813 -GGCTT
s panTro5.chr6             30308404 5 + 175400573 -GGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30542916 5 + 173848474 -GGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     249857 5 +   2037526 -GGCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74916903 5 + 122973662 -AGCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796215 5 + 172585720 -AGCTg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30085734 5 - 170955103 -GGCTg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     335057 5 +   1495729 -GGCTg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     432917 5 -    863181 -GGCTg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585009 5 -  71996105 -GGCTg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     275487 5 -    735854 -GGCTg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     223056 5 -   1829203 -GGCTg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30395884 5 + 171630274 -GGCTg
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     851117 5 -   1771730 -GGCTg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     336900 5 -    383796 -GGCTg
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           268022 5 +  18854210 -atcct
i otoGar3.GL873550         C 0 I 174
s canFam3.chr35            26307679 5 +  26524999 ATTCT-
i canFam3.chr35            C 0 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e mm10.chr17               58058516 294 -  94987271 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e saiBol1.JH378341           219194 2345 +    515838 M

a score=125641.000000
s hg38.chr6_GL000254v2_alt  1439046 16 +   4827813 gcacgg-tggctcacac
s panTro5.chr6             30308409 16 + 175400573 gcacgg-tggctcacgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30542921 16 + 173848474 gcacgg-tggctcacgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     249862 16 +   2037526 gcacgg-tggctcacgc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74916908 16 + 122973662 gcatgg-tggctcacgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796220 16 + 172585720 gcgcgg-tggcttatgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30085739 16 - 170955103 gcgcgg-tggcttatgc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     335062 16 +   1495729 gcgtgg-tggcttatgc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     432922 16 -    863181 gcgcgg-tggcttatgc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585014 16 -  71996105 gcgcgg-tggcttatgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     275492 16 -    735854 gtgcgg-tggcttatgc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     223061 16 -   1829203 gcgcgg-tggcttatgc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30395889 16 + 171630274 gcgcgg-tagctcacgc
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     851122 16 -   1771730 gtgcgg-tggctcatgc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     336905 16 -    383796 gcgcag-tagctcaggc
i aotNan1.NW_018496904v1   C 0 C 0
s canFam3.chr35            26307684 17 +  26524999 GCCTGTCTGGTTTAAAT
i canFam3.chr35            C 0 I 102
e micMur3.chr6               312950 2069 + 123392446 I
e mm10.chr17               58058516 294 -  94987271 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e saiBol1.JH378341           219194 2345 +    515838 M
e otoGar3.GL873550           268027 174 +  18854210 I

a score=1006298.000000
s hg38.chr6_GL000254v2_alt  1439062 116 +   4827813 ctgtaatcctagcattttgggaggccaaggtgggcggatcacccaaggtcaggagttcgagaccagccagaccaacatggcaaaaccccatctctactaaaagtac-aaaaaattag
s panTro5.chr6             30308425 116 + 175400573 ctgtaatcccagcattttgggaggccaaggtgggcggatcacccaaggtcaggagttcgagaccagccagaccaacatggcaaaaccccatctctactaaaagtac-aaaaaattag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30542937 116 + 173848474 ctgtaatcccagcattttgggaggccaaggtgggcggatcacccaaggtcaggagttcgagaccagccagaccaacatggcaaaaccccatctctactaaaagtac-aaaaaattag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     249878 116 +   2037526 ctgtaatcccagcattttgggaggccaaggtgggcggatcacccaaggtcaggagttcgagaccagccagaccaacatggcaaaaccccatctctactaaaagtac-aaaaaattag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74916924 116 + 122973662 ctataatcccagcattttgggaggccaaggtgggcggatcacccaaggtcaggagttcgagaccagccagaccaacatggcgaaaccccatctctactaaaagtac-aaaaaattag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796236 116 + 172585720 ctgtaatcccagcattttgggaggccaaggtgggcggatcacccgaggtcaagagttcaagaccagccagaccaacatggcggaactccgtccctactaaaagtac-aaaaaattgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30085755 116 - 170955103 ctgtaatcccagcattttgggaggccaaggtgggcggatcacccgaggtcaagagttcaagaccagccagaccaacatggcggaactccgtccctactaaaagtac-aaaaaattgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     335078 116 +   1495729 ctgtaatcccagcattttgggaggccaaggtgggcggatcacccgaggtcaagagttcaagaccagccagaccaacatggcggaactccgtccctactaaaagtac-aaaaaattgg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     432938 116 -    863181 ctgtaatcccagcattttgggagtccaaggtgggcggatcacccgaggtcaagagttcaagaccagccagaccaacatggtggaactccgtccctactaaaagtac-aaaaaattgg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585030 116 -  71996105 ctgtaatcccagcattttgggaggccaaggtgggcggatcacccgaggtcaagagttcaagaccagccagaccaacatggcagaactctgtccctactaaaagtac-aaaaaattgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     275508 116 -    735854 ctgtaatcccagcattttgggaggccaaggtgggcggatcacccgaggtcaagagttcaagaccagccagaccaacatggcggaactccatccctactaaaagtac-aaaaaattgg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     223077 116 -   1829203 ctataatcccagcattttgggaggccaaggtgggcggatcacccgaggtcaagagttcaagaccagccagaccaacatggcggaactccgtccctattaaaagtac-aaaaaattgg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30395905 116 + 171630274 ctgtaatcccggcactttgggaggctgcagcaggcagatcacccaaattcaggagtttgagacaagccagaccaacatggcaaaacttcatctctactaaaaatac-aaataattag
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     851138 117 -   1771730 ctgtaatcccagcactttgggagcctgcagcaggcagatcactcaaggtcaggagttcgagaccagccagaccaacatggcaaaacttcatctctactaaaaatacaaaaaaattag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     336921 116 -    383796 ctgtaatcccagcattttgggaggctgcagcaggcagatcatccaaggtcaggagtttgagacaagccagaccaacatggcaaaactttgtctctactaaaaatac-aaaaaattag
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e mm10.chr17               58058516 294 -  94987271 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e canFam3.chr35            26307701 102 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M
e otoGar3.GL873550           268027 174 +  18854210 I

a score=22363.000000
s hg38.chr6_GL000254v2_alt  1439178 3 +   4827813 ctg
s panTro5.chr6             30308541 3 + 175400573 ccg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543053 3 + 173848474 ccg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     249994 3 +   2037526 ccg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917040 3 + 122973662 ccg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796352 3 + 172585720 ctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30085871 3 - 170955103 ctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     335194 3 +   1495729 ccg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433054 3 -    863181 cca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585146 3 -  71996105 cca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     275624 3 -    735854 cca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     223193 3 -   1829203 ccg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396021 3 + 171630274 cca
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     851255 3 -   1771730 ctg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     337037 3 -    383796 ccg
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58058810 3 -  94987271 cca
i mm10.chr17               I 294 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e canFam3.chr35            26307701 102 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M
e otoGar3.GL873550           268027 174 +  18854210 I

a score=482377.000000
s hg38.chr6_GL000254v2_alt  1439181 55 +   4827813 ggtgtggtggtgggcac-ctgtaatcccagctacctaagaga-------------ctgaggcaagagaa
s panTro5.chr6             30308544 55 + 175400573 ggtatggtggtgggcac-ctgtaatcccagcaacttaagaga-------------ctgaggcaggagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543056 55 + 173848474 ggtatggtggtgggcac-ctgtaatcccagcaacttaagaga-------------ctgaggcaggagaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     249997 55 +   2037526 ggtgtggtggtaggcac-ctgtaatcccagctacttaagaga-------------ctgaggcaggagaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917043 55 + 122973662 gatgtggtgatgggcac-ctgtaatctcagctacttaagaga-------------ctgaggcaggagaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796355 55 + 172585720 gatgtgatggtgggcac-ctgtaatcccagctagttaagaag-------------ctgaggcaggagaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30085874 55 - 170955103 gatgtgatggtgggcac-ctgtaatcccagctagttaagaag-------------ctgaggcaggagaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     335197 55 +   1495729 gatgtgatggtgggcac-ctgtaatcccagctagttaagaag-------------ctgaggcaggagaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433057 55 -    863181 gatgtgatggtgggcac-ctgtaatcccagctagttaagaag-------------ctgagacaggagaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585149 55 -  71996105 gatgtgatggtgggcac-ctgtaatcccagctagttaagaag-------------ctgaggcaggagaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     275627 55 -    735854 gatgtgatggttggcac-ctgtaatcccagctagttaagaag-------------ctgaggcaggagaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     223196 55 -   1829203 gatgtgatggtgggcac-ctgtaatcccagctagttaagaag-------------ctgaggcaggagaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396024 55 + 171630274 ggcatggtggcaagcac-ctgtaatcccagatatttaagagg-------------ctgaggcaggagaa
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     851258 55 -   1771730 ggcatggtggcaggcgc-ctgtaatccctgatatttaagagg-------------ctgaggcaggagaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     337040 55 -    383796 ggcatggtggcaggcgc-ctgtaatcccagatatttaagagg-------------ttgaggcaggagaa
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58058813 54 -  94987271 ggtatggtcaagtacct-ctctaattccaga-attcaggaga-------------atgagataggagga
i mm10.chr17               C 0 I 96
s canFam3.chr35            26307803 69 +  26524999 agtttacaggtgcacacacgggaagcccagagacttaagtaatttgtttgcagtcttgaagccagggaa
i canFam3.chr35            I 102 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e saiBol1.JH378341           219194 2345 +    515838 M
e otoGar3.GL873550           268027 174 +  18854210 I

a score=608017.000000
s hg38.chr6_GL000254v2_alt  1439236 71 +   4827813 gcccttgaacccgggaggctgaggttgcagtgagctgaga-tgtgccagtgcactccagcctgggtgacaga
s panTro5.chr6             30308599 71 + 175400573 gcccttgaacctgggaggctgaggttgcagtgagctgaga-tgtgccactgcactccagcctgggtgacaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543111 71 + 173848474 gcccttgaacctgggaggctgaggttgcagtgagctgaga-tgtgccactgcactccagcctgggtgacaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250052 71 +   2037526 gcccttgaacccgggaggctgaggttgcagtgagctgaga-tgtgccactgcactccagcctgggtgacaga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917098 71 + 122973662 gcccttgaacccgggaggctgaggttgcagtgagctgaga-tgtgccactgcactccagcctgggtgacagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796410 71 + 172585720 gcccttgaacccaggaggctgaggttgcagtgagctgaga-tgcgccactgcactccagcctgggtaacaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30085929 71 - 170955103 gcccttgaacccaggaggctgaggttgcagtgagctgaga-tgcgccactgcactccagcctgggtaacaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     335252 71 +   1495729 gcccttgaacccaggaggctgaggttgcagtgagctgaga-tgcgccactgcactccagcctgggtaacaga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433112 71 -    863181 gcccttgaacccaggaggctgaggttgcagtgagctgaga-tgcaccactgcactccagcctgggtaacaga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585204 71 -  71996105 gcccttgaacccaggaggctgaggttgcagtgagctgaga-tgcgccactgtactccagcctgggtaacaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     275682 71 -    735854 gcccttgaacccaggaggctgaggttgcagtgagctgaga-tgcaccactgcactccagcctgggtaacaga
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     223251 71 -   1829203 gcccttaaacccagaaggctgaggttgcagtgagctgaga-tgcgccactgcactccagcctgagtaacaga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396079 72 + 171630274 tcccttgaacagagaaagctgaggttgcagtgagctgagattgcgccactgcattccagcctgggcaataga
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     851313 72 -   1771730 tcccttgaacccagaaaactgaggttgcagtgagctcagattgcaccactgcactccagcctgggcaacaga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     337095 72 -    383796 tcccttgaacccaggaagctgaggttgcagtgagctgagattgtgccactgcactccagcctgggcaacaga
i aotNan1.NW_018496904v1   C 0 C 0
s canFam3.chr35            26307872 34 +  26524999 gcgc---aactggcaaaaaccaggtttgaaTGGGCTG-----------------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e mm10.chr17               58058867 96 -  94987271 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e saiBol1.JH378341           219194 2345 +    515838 M
e otoGar3.GL873550           268027 174 +  18854210 I

a score=31143.000000
s hg38.chr6_GL000254v2_alt  1439307 12 +   4827813 gcaaggcttcat
s panTro5.chr6             30308670 12 + 175400573 gcaaggcttcat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543182 12 + 173848474 gcaaggcttcat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250123 12 +   2037526 gcaaggcttcat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917169 12 + 122973662 gcaagacttcat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796481  5 + 172585720 gcaag-------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086000  5 - 170955103 gcaag-------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     335323  5 +   1495729 gcaag-------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433183  5 -    863181 gcaag-------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585275 12 -  71996105 gcaagacttcat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     275753 12 -    735854 gcaagacttcat
i manLeu1.NW_012107142v1   C 0 I 1548
s colAng1.NW_012115577v1     223322 12 -   1829203 gcaagacttcat
i colAng1.NW_012115577v1   C 0 I 8
s calJac3.chr4             30396151 12 + 171630274 gtgagactctgt
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     851385 12 -   1771730 gtaggactctgt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     337167 12 -    383796 gtgagactctgt
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58058963  8 -  94987271 ggaaggga----
i mm10.chr17               I 96 I 5
e micMur3.chr6               312950 2069 + 123392446 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e canFam3.chr35            26307906  0 +  26524999 C
e saiBol1.JH378341           219194 2345 +    515838 M
e otoGar3.GL873550           268027 174 +  18854210 I

a score=-14166.000000
s hg38.chr6_GL000254v2_alt  1439319 6 +   4827813 aaaaac
s panTro5.chr6             30308682 6 + 175400573 aaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543194 5 + 173848474 aaaaa-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250135 6 +   2037526 aaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917181 4 + 122973662 aaaa--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796486 2 + 172585720 ac----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086005 2 - 170955103 ac----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     335328 2 +   1495729 ac----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433188 2 -    863181 ac----
i cerAty1.NW_012002535v1   C 0 C 0
s colAng1.NW_012115577v1     223342 2 -   1829203 aC----
i colAng1.NW_012115577v1   I 8 I 23
s mm10.chr17               58058976 1 -  94987271 a-----
i mm10.chr17               I 5 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e canFam3.chr35            26307906 0 +  26524999 C
e saiBol1.JH378341           219194 2345 +    515838 M
e otoGar3.GL873550           268027 174 +  18854210 I
e aotNan1.NW_018496904v1     337179 0 -    383796 C
e cebCap1.NW_016107755v1     851397 0 -   1771730 C
e calJac3.chr4             30396163 0 + 171630274 C
e manLeu1.NW_012107142v1     275765 1548 -    735854 I
e chlSab2.chr17            29585287 0 -  71996105 C

a score=-20652.000000
s hg38.chr6_GL000254v2_alt  1439325 23 +   4827813 t-------------tcataaaaaaaaaaagaagaag
s panTro5.chr6             30308688 36 + 175400573 aaaaagaagaagaagaagaagaagaagaagaagaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543199 18 + 173848474 ------------------aaaaagaagaagaagaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250141 23 +   2037526 a-------------aaagaagaagaagaagaagaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917185 18 + 122973662 ------------------aagaagaagaagaagaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796488 18 + 172585720 ------------------ttcatctaaaaaaaaaTG
i rheMac8.chr4             C 0 I 17
s macFas5.chr4             30086007 18 - 170955103 ------------------ttcatctaaaaaaaaaTG
i macFas5.chr4             C 0 I 17
s macNem1.NW_012012100v1     335330 18 +   1495729 ------------------ttcatctaaaaaaaaaTG
i macNem1.NW_012012100v1   C 0 I 17
s cerAty1.NW_012002535v1     433190 18 -    863181 ------------------ttcatctaaaaaaaattt
i cerAty1.NW_012002535v1   C 0 I 17
s chlSab2.chr17            29585287 13 -  71996105 -----------------------ctaaaaaaaattt
i chlSab2.chr17            C 0 I 20
s calJac3.chr4             30396163 11 + 171630274 ---------------------ctcaaaaaaaa----
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     851397 15 -   1771730 ---------------------ctcaaaaaaaaaaaa
i cebCap1.NW_016107755v1   C 0 I 8
s aotNan1.NW_018496904v1     337179 15 -    383796 ---------------------ctcaaaaaaaaaaaa
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58058977 23 -  94987271 -------------gagagaaagaaagaaagagaaag
i mm10.chr17               C 0 I 5
s canFam3.chr35            26307906  7 +  26524999 --------------------------GAAGAGG---
i canFam3.chr35            C 0 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e dasNov3.JH580105            13456 1505 -     45298 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e saiBol1.JH378341           219194 2345 +    515838 M
e otoGar3.GL873550           268027 174 +  18854210 I
e colAng1.NW_012115577v1     223344 23 -   1829203 I
e manLeu1.NW_012107142v1     275765 1548 -    735854 I

a score=16574.000000
s hg38.chr6_GL000254v2_alt  1439348 3 +   4827813 aag
s panTro5.chr6             30308724 3 + 175400573 aag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543217 3 + 173848474 aag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250164 3 +   2037526 aag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917203 3 + 122973662 aag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796523 3 + 172585720 AAA
i rheMac8.chr4             I 17 C 0
s macFas5.chr4             30086042 3 - 170955103 AAA
i macFas5.chr4             I 17 C 0
s macNem1.NW_012012100v1     335365 3 +   1495729 AAA
i macNem1.NW_012012100v1   I 17 C 0
s cerAty1.NW_012002535v1     433225 3 -    863181 AAA
i cerAty1.NW_012002535v1   I 17 C 0
s manLeu1.NW_012107142v1     277313 3 -    735854 AAA
i manLeu1.NW_012107142v1   I 1548 C 0
s cebCap1.NW_016107755v1     851420 3 -   1771730 aag
i cebCap1.NW_016107755v1   I 8 C 0
s mm10.chr17               58059005 3 -  94987271 aag
i mm10.chr17               I 5 I 2
s canFam3.chr35            26307913 3 +  26524999 CAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            14961 3 -     45298 aaa
i dasNov3.JH580105         I 1505 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e saiBol1.JH378341           219194 2345 +    515838 M
e otoGar3.GL873550           268027 174 +  18854210 I
e aotNan1.NW_018496904v1     337194 0 -    383796 C
e calJac3.chr4             30396174 0 + 171630274 C
e colAng1.NW_012115577v1     223344 23 -   1829203 I
e chlSab2.chr17            29585300 20 -  71996105 I

a score=21877.000000
s hg38.chr6_GL000254v2_alt  1439351 2 +   4827813 aa
s panTro5.chr6             30308727 2 + 175400573 aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543220 2 + 173848474 aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250167 2 +   2037526 aa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917206 2 + 122973662 aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796526 2 + 172585720 AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086045 2 - 170955103 AA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     335368 2 +   1495729 AA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433228 2 -    863181 AA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585320 2 -  71996105 AA
i chlSab2.chr17            I 20 C 0
s manLeu1.NW_012107142v1     277316 2 -    735854 AA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     223367 2 -   1829203 AA
i colAng1.NW_012115577v1   I 23 C 0
s calJac3.chr4             30396174 2 + 171630274 aa
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     851423 2 -   1771730 aa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     337194 2 -    383796 aG
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58059010 2 -  94987271 ag
i mm10.chr17               I 2 C 0
s canFam3.chr35            26307916 2 +  26524999 GA
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            14964 2 -     45298 aa
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e saiBol1.JH378341           219194 2345 +    515838 M
e otoGar3.GL873550           268027 174 +  18854210 I

a score=278665.000000
s hg38.chr6_GL000254v2_alt  1439353 30 +   4827813 gaaGATTTGAACCAAAAGGTAGAGAAGCAC
s panTro5.chr6             30308729 30 + 175400573 gaagaaTTGAACGAAAACGTAGAGAAGCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543222 30 + 173848474 gaagaaTTGAACGAAAACGTAGAGAAGCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250169 30 +   2037526 gaagaTTTGAACCAAAAGGTAGAGAAGCAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917208 30 + 122973662 caaGATTTGAACCAAAAGGTAGAGAAGCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796528 30 + 172585720 GAAGATTTGAACCAAAAGGAAGAGAAGCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086047 30 - 170955103 GAAGATTTGAACCAAAAGGAAGAGAAGCAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     335370 30 +   1495729 GAAGATTTGAACCAAAAGGAAGAGAAGCAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433230 30 -    863181 GAAGATTTGAACCAAAAGGAAAAGAAGCAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585322 30 -  71996105 GAAGATTTGAACCAAAAGGAAGAGAAGCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     277318 30 -    735854 GAAGATTTGAACCAAAAGGAAAAGAAGCAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     223369 30 -   1829203 GAAGATTTGAACCAAAAGGAAGAGAAGCAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396176 30 + 171630274 GCAGATTTGAACCAAAAGGAAGAGAAGCAC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     851425 30 -   1771730 GCAGATTTGATCCAAAAGGAAGGGAAGAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     337196 30 -    383796 GCTGATTTGAACCAGAAGGAAGAGAAGCAC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           268201 30 +  18854210 GCAGACCTGAATCTAAAGGAGGAGAAAAGC
i otoGar3.GL873550         I 174 C 0
s mm10.chr17               58059012 30 -  94987271 aaagaaagaaagaaagaaagaaagaaagaa
i mm10.chr17               C 0 C 0
s canFam3.chr35            26307918 23 +  26524999 GGGGTTCTG-------GGGCAGGAAAGCCC
i canFam3.chr35            C 0 I 108
s dasNov3.JH580105            14966 30 -     45298 ccgagtttgagcATAAAGGAGGAGAAGGAA
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e saiBol1.JH378341           219194 2345 +    515838 M

a score=891608.000000
s hg38.chr6_GL000254v2_alt  1439383  99 +   4827813 -----------AAGACAAGAGGCCGTGAAAAAGCAAGTCATGCATTG-GTGAGTATG-TGTGTGGAGGGCAGGGATGAGGAAAATTTCAGAACAGA-----ATCAATTCAGCCTTGT
s panTro5.chr6             30308759  99 + 175400573 -----------AAGACAAGAGGCCGTGAAAAAGCAAGCCATGCATTG-ATGAGTATG-TGTGTGGAGGGCAGGGATGAGGAAAATTTCAGAACAGA-----ATCAATTCAGCCTTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543252  99 + 173848474 -----------AAGACAAGAGGCCGTGAAAAAGCAAGCCATGCATTG-ATGAGTATG-TGTGTGGAGGGCAGGGATGAGGAAAATTTCAGAACAGA-----ATCAATTCAGCCTTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250199  99 +   2037526 -----------AAGACAAGAGGCCGTGAAAAAGCAAGCCATGCATTG-GTGAGTATG-TGTGTGGAGGGCAGGGATGAGGAAAATTTCAGAACAGA-----ATCAATTCAGCCTTGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917238  99 + 122973662 -----------GAGACAAGAGGCCGTGAAAAAGCAAGCCATGCACTG-GTGAGTATG-TGTGTGGAGGGCAGGGATAAAGAACATTTCAGAACAGA-----ATCAATTCAGCCTTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796558 100 + 172585720 -----------AAGACAAGAGGCCATGAAAAAGCAAGCCGCGCATTGTGTGAGTATG-TGTGTGGAGGGCAGGGATGAGGAACATTTCAGAACAGA-----ATCAATTCAGCCTTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086077 100 - 170955103 -----------AAGACAAGAGGCCATGAAAAAGCAAGCCGCGCATTGTGTGAGTATG-TGTGTGGAGGGCAGGGATGAGGAACATTTCAGAACAGA-----ATCAATTCAGCCTTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     335400 100 +   1495729 -----------AAGACAAGAGGCCATGAAAAAGCAAGCCGTGCATTGTGTGAGTATG-TGTGTGGAGGGCAGGGATGAGGAACATTTCAGAACAGA-----ATCAATTCAGCTTTGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433260 100 -    863181 -----------AAGACAAGAGGCCATGAAAAAGCAAGCCGCGCATTGTGTGAGTATG-TGTGTGGAGGGCAGGGATGAGGAACATTTCAGAACAGA-----ATCAATTCAGCCTTGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585352 100 -  71996105 -----------AAGACAAGAGGCCATGAAAAAGCAAGCCGCGTATTGTGTGAGTATG-TGTGTGGAGGGCAGGGATGAGGAACATTTCAGAACAGA-----ATCAAATCAGCCTTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     277348 100 -    735854 -----------AAGACAAGAGGCCATGAAAAAGCAAGCCGCGCATTGTGTGAGTATG-TGTGTGGAGGGCAGGGATGAGGAACATTTCAGAACAGA-----ATCAATTCAGCCTTGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     223399 100 -   1829203 -----------AAGACAAGAGGCCATGAAGAAGCAAGCCGTGCATTGTGTGAGTATG-TGTGTGGAGGGCAGGGATGAGGAACATTTCAGAACAGA-----ATCAATTCAGCCTTGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396206 100 + 171630274 -----------AAGACAAGAGGCCATGAAAAAGAAACCCACACACTGTGTGAGTATG-TGCGTGGAGGGCAGGGATGAGAAACATTTCAGAACAGA-----TTCAATTCAGCCTTGT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     851455 100 -   1771730 -----------AAGACAAGAGGCTGTGAAAAAGAAACCCACACACTGTGTGAGTATG-TGTGTGGAGGGCAGGGATGAGAAACATTTCAGAACAGA-----ATCAATTCAGCCTCGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     337226 100 -    383796 -----------AAGACAAGAGGCTGTGAAAAAGAAACCCACACACTGTGTGAGTATG-TGTGCGGAGGGCAGGGATGAGAAACATTTCAGAACAGA-----ATCAATTCAGCCTTGT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           268231  74 +  18854210 -----------CAGACAAAAAAATATGAAAAAGGGGGCGAT---CTG------------------------GAGATGAGGAGCCTTTCAGAACAGT-----AGTGATTTGGCCTTTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58059042  94 -  94987271 -----------aggaaggaagagagaGAAATAACAA------------AaaagaaggatggaagtaagggagggaggaaggatggatagaaagagagaaagaTCTAGAGAGCCATCC
i mm10.chr17               C 0 I 5
s dasNov3.JH580105            14996 110 -     45298 AACACTGGGGGAGGACAAGAGGAAGTGAACAAGAAAGAAAGAC-TGGAGTGGCAGAA-GGCGGGGGCGGTGGGGAGATGGGGGCTTAAACAGCAGG-----ACTGACACTGCCTTGG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               312950 2069 + 123392446 I
e proCoq1.NW_012149775v1     117620 2121 -   1411461 I
e canFam3.chr35            26307941 108 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M

a score=1181982.000000
s hg38.chr6_GL000254v2_alt  1439482  98 +   4827813 GCAGAAAGGAATAATGAAGGCAGGAG--GCAGCAACTTCAGGGCTGTCTGAT------TTGAAGGAAATATTAAAGCCTTTATCAGGAAAGGGGAATCACTAACAG
s panTro5.chr6             30308858  98 + 175400573 GCAGAAAGGAATAATGAAGGCAGGAG--GCAACAACTTCAGGGCTGTCTGAT------TTGAAGGAAATATTAACGCCTTTATCAGGAAAGGGTAATCACTAACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543351  98 + 173848474 GCAGAAAGGAATAATGAAGGCAGGAG--GCAACAACTTCAGGGCTGTCTGAT------TTGAAGGAAATATTAATGCCTTTATCAGGAAAGGGTAATCACTAACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250298  98 +   2037526 GCAGAAAGGAATAATGAAGGCAGGAG--GCAACAACTTCAGGGCTGTCTGAT------TTGAAGGAAATATTAATGCCTTTATCAGGAAATGGTAATCACTAACAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917337  98 + 122973662 GCAGAAAGGAATAATGAAGGCAGGAG--GCAGCAACTTCAGGGCTGTCTGAA------TTGAAGGAAATATTAAAGCCTTTATCAGGAAAGGGAAATCACTAACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796658  98 + 172585720 GCAGAAAGGAATAATGAAGGCAGGAG--GCAGCAACTTCAGGGCTGTCTGAT------TTGAAGGAAATCTTAAAGGCTTTATCAGGAAAGGGGAATCACTAACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086177  98 - 170955103 GCAGAAAGGAATAATGAAGGCAGGAG--GCAGCAACTTCAGGGCTGTCTGAT------TTGAAGGAAATCTTAAAGGCTTTATCAGGAAAGGGGAATCACTAACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     335500  98 +   1495729 GCAGAAAGGAATAATGAAGGCAAGAG--GCAGCAACTTCAGGGCTGTCTGAT------TTGAAGGAAATCTTAAAGGCTTTATCAGGAAAGGGGAATCACTAACAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433360  98 -    863181 GCAGAAAGGAATAATGAAGGCAGGAG--GCAGCAACTTCAGGGCTGTCTGAT------TTGAAGGAAATCTTAAAGGCTTTATCAGGAAAGGGGAATCACTAACAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585452  98 -  71996105 GCAGAAAGGAATAATGAAGGCAGGAG--GCAGCAACTTCAGGGCTGTCTGAT------TTGAAGGAAATCTTAAAGGCTTTATTAGGAAAGGGGAATCACTAACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     277448  98 -    735854 GCAGAAAGGAATAATGAAGGCAGGAG--GCAGCAACTTCAGGGCTGTCTGAT------TTGAAGGAAATCTTAAAGGCTTTATCAGGAAAGGGGAATCACTAACAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     223499  98 -   1829203 GCAGAAAGGAATAATGAAGGCAGGAG--ACAGCAACTTCAGGGCTGTCTGAT------TTGAAGGAAATCTTAAAGGCTTTATCAGGAAAGGGGAATCACTAACAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396306  96 + 171630274 GCAGAAAGGAATAAAGAAGGCAGGAG--GCAGCAACTTCAGGGCTGTCTGAT------TTGAAGGAAATATTAAAGGCTTTATCAGGAAAGGGGAACCACTA--AG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     851555  96 -   1771730 ACAGAAAGGAATAATGAAGACAGGAG--GCAGCAACTTCAGGGCTGTCTGAT------TTGAAGGAAATATTAAAGGCTTTGTCAGGAAAGGGGAACCACTA--AG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     337326  96 -    383796 GCAGGAAGGAATAATGAAGGCAGGAG--GCAGCAACTTCAGGGCTGTCTGAG------TTGAAGGAAATATTAAAGGCTTTATCAGGAAAGGGGAACCACTA--AG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               315019  97 + 123392446 GCAGGAAGGGATAATGAGGGCAGAAG--ACAGCCACCTCAGAGCCATCTGAT------TTGAAGGACATGTTAAGG-CTCTATCAGGGAAGGGGAATAACTGACAG
i micMur3.chr6             I 2069 I 54
s proCoq1.NW_012149775v1     119741  97 -   1411461 GCAGGAAGGGATAATGAGGGCAGGAG--ACAGCAACCTCAGAGCCCTCTGAT------TTGAAGGAAATGTTAAGG-CTCTATCAGGGAAGGGGAAAAACTAACAG
i proCoq1.NW_012149775v1   I 2121 I 54
s otoGar3.GL873550           268305  68 +  18854210 ACAGAAAGAGATAATGAAGGCAAGAG--AGAGCAA-CTCAGAGCTGTCTGAT------TTGAAGGAACTGTTAAAG-C----------------------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58059141 100 -  94987271 CTAGAAAGGAATAATGAAGACAGAA----CAGCAACAGCACAGCTGTTTGGTTTAATGTTGAAGGACACTTGAGGGTTAATACTAGGGAAAGGT--TCATCAACAC
i mm10.chr17               I 5 C 0
s dasNov3.JH580105            15106  85 -     45298 GCAGAAATGAGTTGTGATGGCAGGAGCAGAAGCAAC-----AGCTGTGGGAC------TGGAGGCACGTGCTCAGA----------GGGGCGGGAATCACCAGCAG
i dasNov3.JH580105         C 0 C 0
e canFam3.chr35            26307941 108 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M

a score=172303.000000
s hg38.chr6_GL000254v2_alt  1439580 18 +   4827813 TCAGACAGAAGCACCAGA
s panTro5.chr6             30308956 18 + 175400573 TCAGACAGAAGCACCAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543449 18 + 173848474 TCAGACAGAAGCACCAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250396 18 +   2037526 TCAGACAGAAGCACCAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917435 18 + 122973662 TCAGACAGAAGCACCAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796756 18 + 172585720 TCAGACAGAAGCACCAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086275 18 - 170955103 TCAGACAGAAGCACCAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     335598 18 +   1495729 TCAGACAGAAGCACCAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433458 18 -    863181 TCAGACAGAAGCACCAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585550 18 -  71996105 TCAGACAGAACCACCAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     277546 18 -    735854 TCAGACAGAAGCACCAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     223597 18 -   1829203 TCAGACAGAAGCACCAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396402 18 + 171630274 TCAGACAGAAGCACTGGA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     851651 18 -   1771730 TCAGACAGAAGCGCCAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     337422 18 -    383796 TCAGACAGAAGCACCGGA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           268373  6 +  18854210 ------------ACAGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58059241 14 -  94987271 ----TCAAAAGCACTGCA
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            15191 12 -     45298 ------ACATGCACCTAC
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               315116 54 + 123392446 I
e proCoq1.NW_012149775v1     119838 54 -   1411461 I
e canFam3.chr35            26307941 108 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M

a score=413830.000000
s hg38.chr6_GL000254v2_alt  1439598 42 +   4827813 CTGAAGGAAAAAAGATCACAGCCCCATATCCTTAGAGAGTA---T
s panTro5.chr6             30308974 42 + 175400573 CTGAAGGAAAAAAGATCACAGACCCATATCCTTAGAGAGTG---T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543467 42 + 173848474 CTGAAGGAAAAAAGATCACAGACCCATATCCTTAGAGAGTG---T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250414 42 +   2037526 CTGAAGGAAAAAAGATCACAGACCCATATCCTTAGAGAGTG---T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917453 45 + 122973662 CTGAAGGAAAAAAGATCACAGCCCCATATCCTTAGAGAGTGTCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796774 45 + 172585720 CTGAATGAAAAAAGATCACAGCCTCATATCCTTAGAGAGTGTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086293 45 - 170955103 CTGAATGAAAAAAGATCACAGCCCCATATCCTTAGAGAGTGTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     335616 45 +   1495729 CTGAATGAAAAAAGATCACAGCCCCATATCCTTAGAGAGTGTCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433476 45 -    863181 CTGAATGAAAAAAGATCACAGCCCCATATCCTTAGAGGGTGTCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585568 45 -  71996105 CTGAATGAAAAAAGATCACAGCCCCATATCCTTAGAGAGTGTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     277564 45 -    735854 CTGAATGAAAAAAGATCACAGCCCCATATCCTTAGAGGGTGTCCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     223615 45 -   1829203 CTGAATGAAAAACTATCACAGCCCCATATCCTTAGAGAGTGTCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396420 45 + 171630274 CTGAAGGACAAAAGGTCACAGCCCCACATCCTCAGCGAGTGTCCT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     851669 45 -   1771730 CTGAAGGACAAAAGGTCACAGCCCCACATCCTCAGCGAGTGTCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     337440 45 -    383796 CTGAAGGACAAAAGGTCACAGCCGCACATCCTCAGCGAGTGTCCT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           268379 42 +  18854210 CTGAAGGATGAAAGGTCATGGCCCCACATCCT---AAAATATCCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58059255 39 -  94987271 CCGAAGGGTGACAGGTCACGGCCTCACATCCTTAGGGAG------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26308049 41 +  26524999 CTGTGGGTGGAAAGGTCATGGCCCAGTATCCTCAG-GAGCAT---
i canFam3.chr35            I 108 I 2
s dasNov3.JH580105            15203 38 -     45298 --CAGGGTGGAAAGGCC--GGTCCTGTGTCCTCAGCGAGCAT---
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               315116 54 + 123392446 I
e proCoq1.NW_012149775v1     119838 54 -   1411461 I
e saiBol1.JH378341           219194 2345 +    515838 M

a score=849828.000000
s hg38.chr6_GL000254v2_alt  1439640 60 +   4827813 ---CAGAGACCTCAGATG-CCAGGCATCTGCCATGCTGTTGTTTTACTCTGCAGTGAGTCACTG
s panTro5.chr6             30309016 60 + 175400573 ---CAGAGACCTCAGGTG-CCAGGCATCTGCCATGCTGTTGATTTATTCTGCAGTGAGTCACTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543509 60 + 173848474 ---CAGAGACCTCAGGTG-CCAGGCATCTGCCATGCTGTTGATTTATTCTGCAGTGAGTCACTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250456 60 +   2037526 ---CAGAGACCTCAGGTG-CCCGGCATCTGCCATGCTGTTGATTTATTCTGCAGTGAGTCACTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917498 60 + 122973662 ---CAGAGACCTCAGGTG-CCAGGCATCTGCCATGATGTTGATTTATTCTGCAGTGAGTCACTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796819 61 + 172585720 ---CAGAGACCTCAGGTGCCCAAGCATCTGCCATGCTGTTGATTTATTCTGCAGTGAGTCACTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086338 61 - 170955103 ---CAGAGACCTCAGGTGCCCAAGCATCTGCCATGCTGTTGATTTATTCTGCAGTGAGTCACTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     335661 61 +   1495729 ---CAGAGACCTCAGGTGCCCAAGCATCTGCCATGCTGTTGATTTATTCTGCAGTGAGTCACTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433521 61 -    863181 ---CAGAGACCTCAGGTGCCCAAGCATCTGCCATGCTGTTGATTTATTCTGCAGTGAGTCACTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585613 61 -  71996105 ---CAGAGACCTCAGGTGCCCAAGCATCTGCCATGCTGTTGATTTATTCTGCAGTGAGTCACTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     277609 61 -    735854 ---CAGAGACCTCAGGTGCCCAAGCATCTGCCATGCTGTTGATTTATTCTGCAGTGAGTCACTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     223660 61 -   1829203 ---CAGAGACCTCAGGTGCCCAAGCATCTGCCATGCTGTTGATTTATTCTGCAGTGAGTCACTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396465 60 + 171630274 ---CAGAGCCCTCGGGTG-CCAGGCATCTGCCATGCTGTTGACTTATTCTGCAGTGAGTCACTG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     851714 60 -   1771730 ---CAGAGCCCTCGGGTG-CCAGGCATCTGCCGTGCTGTTGATTTATTCTGCAGTGAGTCACTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     337485 60 -    383796 ---CAGAGCCCTCGGGTG-CCAGGCATCTGCCATGCTGTTGATTTATTCTGCAGTGAGTCACTG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               315170 60 + 123392446 ---CAGAGAACTCAGGTG-CCAGGCATCTGTCACGCTGTTGATTTATTCTGCAGTGAGTCACTG
i micMur3.chr6             I 54 C 0
s proCoq1.NW_012149775v1     119892 60 -   1411461 ---CAGAGATCTCAGGTG-CCAGGCATCTGACACGCTGTTGATTTATCCTACAGTGAGTCACTG
i proCoq1.NW_012149775v1   I 54 I 2
s otoGar3.GL873550           268421 60 +  18854210 ---CAGAGAACTCAGGTG-CCAGGCATCTTCCACACTGTTGATTTATTCCACAGTGAGTCACTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58059294 52 -  94987271 ----------CTCAGGAG-TCAGGCATGTGCCG-GCTGTTGATTTACCCTACAGTGAGTCACTG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26308092 39 +  26524999 ---AGGAGAACTCAGGTG-CCAGGCATCTG---------------------CACTGAGTCACCG
i canFam3.chr35            I 2 C 0
s dasNov3.JH580105            15241 60 -     45298 CCCCAGGGAGGCGGGG---GCAGGCACCCCACACG-TGCTGGCTGAGGACCCGCTGAGTCACTG
i dasNov3.JH580105         C 0 C 0
e saiBol1.JH378341           219194 2345 +    515838 M

a score=221877.000000
s hg38.chr6_GL000254v2_alt  1439700 16 +   4827813 GATCCTTGAAACTGGG
s panTro5.chr6             30309076 16 + 175400573 GATCCCTGAAACTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543569 16 + 173848474 GATCCCTGAAACTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250516 16 +   2037526 GATCCCTGAAACTGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917558 16 + 122973662 GATCCCTGAAACTGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796880 16 + 172585720 GATCCCTGAAACTAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086399 16 - 170955103 GATCCCTGAAACTAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     335722 16 +   1495729 GATCCCTGAAACTAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433582 16 -    863181 GATCCCTGAAACTAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585674 16 -  71996105 GATCCCTGAAACTAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     277670 16 -    735854 GATCCCTGAAACTAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     223721 16 -   1829203 GATCCCTGAAACTGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396525 16 + 171630274 GATCCCTGAAACTGAG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     851774 16 -   1771730 GAACCCTGAAACTGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     337545 16 -    383796 GATCCCTGAAACTGAG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               315230 16 + 123392446 GATCCCTGAAACTGAG
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           268481 16 +  18854210 GATCCCTGAAACTAAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58059346 16 -  94987271 GATCCCTGAAACTGAC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26308131 15 +  26524999 GATCCCAGAAACTGA-
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            15301 16 -     45298 GGCCCCAGAGCCTGGC
i dasNov3.JH580105         C 0 C 0
e proCoq1.NW_012149775v1     119952  2 -   1411461 I
e saiBol1.JH378341           219194 2345 +    515838 M

a score=3612450.000000
s hg38.chr6_GL000254v2_alt  1439716 227 +   4827813 GGCAAGGGTGAGATCATTACCCCAGAAGGCAGGGAGCAGAGACAACAAGGCCCTTGGGGTCCAGGCAGCTGAACCCGTCTGGTCAGAGGCCACTGTCACAAAACCAACAAAGAATTCATATCTAATAGGTTTTCCTCAGGGCTCAGATG----AGTAGGTTTGGGAGTTACTGG-GAGGCTGTGATACCAGG--CAGGATGACAAACAAAAACAGT-C-AGCCAAGAAAACAAGCT
s panTro5.chr6             30309092 227 + 175400573 GGCAAGGGTGAGATGATTACCCCAGAAGGCAGGGAGCAGAGACAACAAGGTCCTTGGGGTCCAGGCAGCTGAACCCGTCTGGTCAGAGGCCACTGTCACAAAACCAACAAAGAATTCATATCTAATAGGTTTTCCTCAGGGCTCAGATG----AGTAGGTTTGGGAGTCACTGG-GAGGCTGTGATACCAGG--CAGGATGACAAACAAAAACAGT-C-AGCCAAGAAAACAAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543585 227 + 173848474 GGCAAGGGTGAGATGATTACCCCAGAAGGCAGGGAGCAGAGACAACAAGGTCCTTGGGGTCCAGGCAGCTGAACCCGTCTGGTCAGAGGCCACTGTCACAAAACCAACAAAGAATTCATATCTAATAGGTTTTCCTCAGGGCTCAGATG----AGTAGGTTTGGGAGTCACTGG-GAGGCTGTGATACCAGG--CAGGATGACAAACAAAAACAGT-C-AGCCAAGAAAACAAGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250532 226 +   2037526 GGCAAGGGTGAGATCATTA-CCCAGAAGGCAGGTAGCAGAGACAACAAGGCCCTTGGGGTCCAGGCAACTGAACCCGTCTGGTCAGAGGCCACTGTCACAAAACCAACAAAGAATTCATATCTAATAGGTTTTCCTCAGGGCTCAGATG----AGTAGGTTTGGGAGTCACTGG-GAGGCTGTGATACCAGG--CAGGATGACAAACGAAAACAGT-C-AGCCAAGAAAACAAGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917574 227 + 122973662 GGCAAGGGTGAGATCATTACCCCAGAAGGCGGGGAGCAGAGACAACAAGGCCCTTGGGGTCCAGGGAGCTGAACCCGTCTGGTCAGAGGCCACTGTCACAAAACCAACAAAGAATTCATATCTAATAGGTTTTCCTCAGGGCTCAAATG----AGTAGGTTTGGGAGTCACTGG-GAGGCTGTGATCCCAGG--CAGGATGACAAACAAAAACAGC-C-AGCCAAGAAAACAAGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30796896 227 + 172585720 GGCAAGGGTGAGATCATCACCCCAGAAGGCAGGGAGCAGAGACAACAAGGCCCTTGGGGTCCAGGGAGCTGAACCCGTCTGGTCAGAGGCCACTGTCACAAAACCAACAAAGAATTCATATCTAATAGGTTTTCCTCAGGGCTCAAATG----AGTAGGTTTGGGAGTCACCGG-GAGTCTGTGATACCAGG--CAGGATGACAAACAAAAACAGC-C-AGCCAAGAAAACAAGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086415 227 - 170955103 GGCAAGGGTGAGATCATCACCCCAGAAGGCAGGGAGCAGAGACAACAAGGCCCTTGGGGTCCAGGGAGCTGAACCCGTCTGGTCAGAGGCCACTGTCACAAAACCAACAAAGAATTCATATCTAATAGGTTTTCCTCAGGGCTCAAATG----AGTAGGTTTGGGAGTCACCGG-GAGTCTGTGATACCAGG--CAGGATGACAAACAAAAACAGC-C-AGCCAAGAAAACAAGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     335738 227 +   1495729 GGCAAGGGTGAGATCATCACCCCAGAAGGCAGGGAGCAGAGACAACAAGGCCCTTGGGGTCCAGGGAGCTGAACCCGTCTGGTCAGAGGCCACTGTCACAAAACCAACAAAGAATTCATATCTAATAGGTTTTCCTCAGGGCTCAAATG----AGTAGGTTTGGGAGTCACCGG-GAGTCTGTGATACCAGG--CAGGATGACAAACAAAAACAGC-C-AGCCAAGAAAACAAGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433598 227 -    863181 GGCAAGGGTGAGATCATCACCCCAGAAGGCAGGGAGCAGAGACAACAAGGCCCTTGGGGTCCAGGGAGCTGAACCCGTCTGGTCAGAGGCCACTGTCACAAAACCAACAAAGAATTCATATCTAATAGGTTTTCCTCAGGGCTCAAATG----AGTAGGTTTGGGAGTCACCGG-GAGGCTGTGATACCAGG--CAGGATGACAAACAAAAACAGC-C-AGCCAAGAAAACAAGCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585690 227 -  71996105 GGCAAGGGTGAGATCATCACCCCAGAAGGCAGGGAGCAGAGACAACAAGGCCCTTGGGGTCCAGGGAGCTGAACCCGTCTGGTCAGAGGCCACTGTCACAAAACCAACAAAGAATTCATATCTAATAGGTTTTCCTCAGGGCTCAAATG----AGTAGGTTTGGGAGTCACCGG-GAGGCTGTGATACCAGG--CAGGATGACAAACAAAAACAGC-C-AGCCAAGAAAACAAGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     277686 227 -    735854 GGCAAGGGTGAGATCATCACCCCAGAAGGCAGGGAGCAGAGACAACAAGGCCCTTGGGGTCCAGGGAGCTGAACCCGTCTGGTCAGAGGCCACTGTCACAAAACCAACAAAGAATTCATATCTAATAGGTTTTCCTCAGGGCTCAAATG----AGTAGGTTTGGGAGTCACCGG-GAGGCTGTGATACCAGG--CAGGATGACAAACAAAAACAGC-C-AGCCAAGAAAACAAGCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     223737 227 -   1829203 GGCAAGGGTGAGATCATCACCCCAGAAGGCAGGGAGCAGAGACAACAAGGCCCTTGGGGTCCAGGGAGCCGAACCCGTCTGGTCAGAGGCCACTGTCACAAAACCAACAAAGAATTCATATCTAATAGGTTTTCCTCAGGGCTCAAATG----AGTAGGTTTGGGAGTCACCGG-GAGGCTGTGATACCAGG--CAGGATGACAAACAAAAACAGC-C-AGCCAAGAAAACAAGCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396541 228 + 171630274 GGCAAGGGTGAGATCATTACCCCAGAAGGCAGGGAGCAGAGACAACAAGGCCCTTGAGGTCCAGGGAGCTGAACCTGTCTAGTCAGAGGCCAGTGTCACAAAACCAACAAAGAATTCATATCTAATAGGTTTTCCTCAGGGCTCAAACG----AGCAGGATCGGGAGTCACCAGAAAGGCTGTGATACCAGGTTTGTGAT-ACAAACAAAAACAGC-C-AGTCAGGAAAACAAG-T
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     851790 227 -   1771730 GGCAAGGGTGAGATCATTACCCCAGAAGGCAGGGAGCAGAGACAACAAGGCCCTTGGGGTCCAGGGAGCTGAACCCGCCTAGTCAGAGGCCAGTGTCACAAAACCAGCAAAGAATTCATATCTAATAGGTTTTCCTCAGGGCTCAAATG----AGTAGAATCAGGAGTCACCAG-AAGGCTGTGATACCAGG--CAGGATGACAAACAAAAACAGC-C-AAACAAGAAAACAAGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     337561 227 -    383796 GGCAAGGGTGAGATCATTATCCCAGAAGGCAGGGAGCAGAGACAACAAGGCCCTTGGGGTCCAGGGAGCTGAACCCGTCTAGTCAGAGGCCAGTGTCACAAAACCAACAAAGAATTCATATCTAATAGATTTTCCTCAGGGCTCAAATG----AGTAGGATTGGGAGTCACCAG-AAGGCTGTGATACCAGG--CAGGATGACAAACAAAAACAGC-C-AGCCAAGAAAACAAACT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               315246 225 + 123392446 -GCAAGAGTGAGGTCATCACTCCAAAAG-CAGGGAGCAGAGACAATAAAGCCCTTGGGGTCCTGGGAGTTGAACCCGTCTGGTCAGAGGCCACTGTCACAAAACCCACAAAGAATTCATATCTAATAGGTTTTCCTCAGGGCTCACATG----AGTAGGTATGGGAGTCACTGG-GAGGCTGTGACACCAGG--GAGAATGACAAACAAAAACAGC-C-AGCCAAGAAAACAAGCT
i micMur3.chr6             C 0 I 254
s proCoq1.NW_012149775v1     119954 226 -   1411461 GGCAAGAGTGAGATCATCACTCCAAAAA-CAGGGAGCAGAGACAACAAAGCCCTTGGGGTTCTGGGAGTTCAACCCATCTGGTCAGAGGCCACTGTCACAAAACCAACAAAGAATTCATATCCAATAGGTTTTCCTCAGGGCTCAGATG----AGTATGTATGGGAGTCACTAG-GAGGCTGGGACACCAGG--CAGTATGACAAACAAAAACAGC-C-ATCCAAGAAAACAAGCT
i proCoq1.NW_012149775v1   I 2 C 0
s otoGar3.GL873550           268497 227 +  18854210 GGCAAGAGTGAGATCATCACCCCAAACGCCAGGGAACAGATACCACAAAGCCCTTGGGGTCCAGGGAATTAAACCTGTCTGGTCGGAGGCCACTGTCACAAAACCAACAAAGAATTCATATCTAATAGGTTTTCCTCAGGGCTCAAATG----AGTAGGTATGGGAGTCACTGG-GAAGCTGTGATACCTGG--CAGTATGACAAACAAAAACAGC-C-AGCCAAGAACACAAGCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58059362 210 -  94987271 AGCCAGGGTGAGGTCACCACCCCACAAGACAAGAGGCAGAAACAAGAAGGCCCTTGCGGACTGAGGAGATGAACCTGTCTGGTCAGAGGCCACGATCCCAAAACCAACAAAGAATTCGTATCTGACAGGTTTTCCTTGGGGCTCAAATGAATAAGTAGGTCTGGTAGTCACTGG-GAG----------------CTG--TGACAAACAAC-----T-T-TGCCAAAAAGATAAGGT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26308146 218 +  26524999 --------TGAGATCATCACCCGAACAGGCAGGGAGCAGAGACAACAAGGCCCTTG-GGTCCAGGGAGCCAAACCTGTCTGGTCAGAGGCCACTGTCACAGAACCAACCAAGAATACGTATCTAATAGGTTTTCCTCAGGCCTCAAATG----AGTAGGTATGGGAGTCACTGG-GAGGCTATG-TACCAGG--GAGGATGACAGACAAACACAAC-CTGGCCTGGGCAAGTGGCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            15317 219 -     45298 -AAAAGCATGAGGTCATCACCCC-GAAGGCAGAGAGCAGAGACAACAACCCCC---GGATCCAGGGAGCTG-GCCTGGCTGGACAGAGGCCACCGTCACGGAAGCAGCCAAGAATCCACGTCTAATGGGTTTCCCTCAAGGCTCACATG----GGCAGG--TGGGGGTCGCTGG-GAGGCTGCGATGCCAGG--CAGGGCG-CAAACACAGACGGTGC-GGCCGAGACAACCGGCT
i dasNov3.JH580105         C 0 C 0
e saiBol1.JH378341           219194 2345 +    515838 M

a score=395351.000000
s hg38.chr6_GL000254v2_alt  1439943 42 +   4827813 TCAGAGTGTTTGCCCTGGGAGAACAATGGATGTCCGGGTAG---------------------A
s panTro5.chr6             30309319 42 + 175400573 TCAGAGTGTTTGCCCTGGGAGAACAAGGGATGTCCAGGTAG---------------------A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543812 42 + 173848474 TCAGAGTGTTTGCCCTGGGAGAACAAGGGATGTCCAGGTAG---------------------A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250758 42 +   2037526 TCAGAGTGTTTGACCTGGGAGAACAAGGGATGTCCAGGTAG---------------------A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917801 60 + 122973662 TCAGAGTGTTTGCCCTGGGAGAACAAGGGATGTCCAGGTAG---AAGCCTGAGAGAGGTCCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797123 60 + 172585720 TCAGAGTGTTTACCCTGGCAGAACAAGGGATGTCTAGGTAG---AAGCCTGAGAGAGGTCCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086642 60 - 170955103 TCAGAGTGTTTGCCCTGGCAGAACAAGGGATGTCTAGGTAG---AAGCCTGAGAGAGGTCCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     335965 60 +   1495729 TCAGAGTGTTTGCCCTGGCAGAACAAGGGAAGTCTAGGTAG---AAGCCTGAGAAAGGTCCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433825 60 -    863181 TCCGAGTGTTTGCCCTGGCAGAACAAGGTATGTCTAGGTAG---AAGCCTGAGAGAGGTCCCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585917 60 -  71996105 TCAGAGTGTTTGCCCTGGCAGAACAAGGGATGTCTAGGTAG---AAGCCTGAGAGAGGTCCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     277913 60 -    735854 TCAGAGTGTTTGCCCTGGCAGAACAAGGGATGTCTAGGTAG---AAGCCTGAGAGAGGTCCCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     223964 60 -   1829203 TCAGAGTGTTTGCCCTGGCAGAACAAGGGATGTCTAGGTAG---AAGCCTGAGAGAGGTCCCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396769 45 + 171630274 GCGGAGCGTTTGCCCTGGCAGAGCAAGAGCTGTCCAGGTGG---AAGC---------------
i calJac3.chr4             C 0 I 5
s cebCap1.NW_016107755v1     852017 45 -   1771730 GCGGAGTGTTTGCCCTGGCAGAACAAGGGGTATCCAGGTAG---AAGC---------------
i cebCap1.NW_016107755v1   C 0 I 5
s aotNan1.NW_018496904v1     337788 45 -    383796 GCAGAGTGTTTGCCCTGGCAGAACAAGGGATGCCCAGGTAG---AAGC---------------
i aotNan1.NW_018496904v1   C 0 I 26
s proCoq1.NW_012149775v1     120180 41 -   1411461 GTGGAGTTTCTGCCCCGGGAGAACGA-GGATGTCCAGGTAG---A------------------
i proCoq1.NW_012149775v1   C 0 I 175
s otoGar3.GL873550           268724 41 +  18854210 ATGGAGTCTCTGCCCTGGGAGAATGA-GGATGTCCAGGTAG---A------------------
i otoGar3.GL873550         C 0 I 28
s mm10.chr17               58059572 38 -  94987271 ----GCCGTCTGCCCTGGGAGAACAAGGCGTAT-TAGGCAG---GA-----------------
i mm10.chr17               C 0 I 2
s canFam3.chr35            26308364 60 +  26524999 --GCAGTTTCTGCCCTGGGAGAATG-GGGGCGTCTGGGCAGCAGAAGCCGCGAAGAGCTTGCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            15536 27 -     45298 GCAGCGC-TCGGCCCTGGGAGGG--------GCCCA---------------------------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               315471 254 + 123392446 I
e saiBol1.JH378341           219194 2345 +    515838 M

a score=14728.000000
s hg38.chr6_GL000254v2_alt  1439985 3 +   4827813 GCC
s panTro5.chr6             30309361 3 + 175400573 GCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543854 3 + 173848474 GCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250800 3 +   2037526 GCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917861 3 + 122973662 GCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797183 3 + 172585720 ACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086702 3 - 170955103 ACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336025 3 +   1495729 ACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433885 3 -    863181 ACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585977 3 -  71996105 ACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     277973 3 -    735854 ACC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224024 3 -   1829203 ACC
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           268793 2 +  18854210 -CC
i otoGar3.GL873550         I 28 I 1
s mm10.chr17               58059612 1 -  94987271 A--
i mm10.chr17               I 2 C 0
s canFam3.chr35            26308424 3 +  26524999 GTC
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            15563 3 -     45298 GCC
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               315471 254 + 123392446 I
e proCoq1.NW_012149775v1     120221 175 -   1411461 I
e saiBol1.JH378341           219194 2345 +    515838 M
e aotNan1.NW_018496904v1     337833 26 -    383796 I
e cebCap1.NW_016107755v1     852062 5 -   1771730 I
e calJac3.chr4             30396814 5 + 171630274 I

a score=56766.000000
s hg38.chr6_GL000254v2_alt  1439988 6 +   4827813 AAAGCC
s panTro5.chr6             30309364 6 + 175400573 AAAGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543857 6 + 173848474 AAAGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250803 6 +   2037526 AAAGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917864 6 + 122973662 AAAGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797186 6 + 172585720 AAGGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086705 6 - 170955103 AAGGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336028 6 +   1495729 AAGGCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433888 6 -    863181 AAGGCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585980 6 -  71996105 AAGGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     277976 6 -    735854 AAGGCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224027 6 -   1829203 AAGGCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396819 6 + 171630274 AGAGGC
i calJac3.chr4             I 5 C 0
s cebCap1.NW_016107755v1     852067 6 -   1771730 AGAGGC
i cebCap1.NW_016107755v1   I 5 C 0
s otoGar3.GL873550           268796 6 +  18854210 AAGGCA
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58059613 6 -  94987271 GTGGCC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26308427 6 +  26524999 AAGGCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            15566 6 -     45298 GAGGCC
i dasNov3.JH580105         C 0 I 103
e micMur3.chr6               315471 254 + 123392446 I
e proCoq1.NW_012149775v1     120221 175 -   1411461 I
e saiBol1.JH378341           219194 2345 +    515838 M
e aotNan1.NW_018496904v1     337833 26 -    383796 I

a score=124453.000000
s hg38.chr6_GL000254v2_alt  1439994 14 +   4827813 ACT---GGC------TCCTCCCT
s panTro5.chr6             30309370 14 + 175400573 ACT---GGC------TCCTCCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543863 14 + 173848474 ACT---GGC------TCCTCCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250809 14 +   2037526 ACT---GGC------TCCTCCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917870 14 + 122973662 ACT---GGC------TCCTCCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797192 14 + 172585720 ACT---GGC------TCCTCCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086711 14 - 170955103 ACT---GGC------TCCTCCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336034 14 +   1495729 ACT---GGC------TCCTCCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433894 14 -    863181 ACT---GGC------TCCTCCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29585986 14 -  71996105 ACT---GGC------TCCTCCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     277982 14 -    735854 ACT---GGC------TCCTCCCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224033 14 -   1829203 ACT---GGC------TCCTCCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396825 14 + 171630274 CCC---AGC------TCCTCCCT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     852073 14 -   1771730 CCC---AGC------TCCTCCCT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           268802 14 +  18854210 GCT---GGC------CCCTACCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58059619 14 -  94987271 ACG---GGC------CTCAGCCA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26308433 23 +  26524999 ACCCAGGGCAGCCAGCCCTCTCT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               315471 254 + 123392446 I
e dasNov3.JH580105            15572 103 -     45298 I
e proCoq1.NW_012149775v1     120221 175 -   1411461 I
e saiBol1.JH378341           219194 2345 +    515838 M
e aotNan1.NW_018496904v1     337833 26 -    383796 I

a score=384792.000000
s hg38.chr6_GL000254v2_alt  1440008 46 +   4827813 CCCCACAACTCAGAGCCACCAG---------GGACCTGG----------GCCA-CGTGTCCCTTTC
s panTro5.chr6             30309384 46 + 175400573 CCCCACAACTCAGAGCCACCAG---------GGACCTGG----------GCCA-TGTGTCCCCTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543877 46 + 173848474 CCCCACAACTCAGAGCCACCAG---------GGACCTGG----------GCCA-TGTGTCCCCTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250823 46 +   2037526 CCCCACAATTCAGAGCCACCAG---------GGACCTGG----------GCCA-TGTGTCCCCTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917884 46 + 122973662 CCCCACAACTCAGAGCCACCAG---------GGACCTGG----------GCCA-TGTGTCCCCTAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797206 46 + 172585720 CCCCACAACTCAGAGCCACCAG---------GGACCTGG----------GCCA-TCTGTCCCCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086725 46 - 170955103 CCCCACAACTCAGAGCCACCAG---------GGACCTGG----------GCCA-TCTGTCCCCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336048 46 +   1495729 CCCCACAACTCAGAGCCACCAG---------GGACCTGG----------GCCA-TCTGTCCCCTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433908 46 -    863181 CCCCACAACTCAGAGCCACCAG---------GGACCTGG----------GCCA-TCTGTCCCCTTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586000 46 -  71996105 CCCCACAACTCAGAGCCACCAG---------GGACCTGG----------GCCA-TCTGTCCCCTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     277996 46 -    735854 CCCCACAACTCAGAGCCACCAG---------GGACCTGG----------GCCA-TCTGTCCCCTTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224047 46 -   1829203 CCCCACAACTCAGAGCCACAAG---------GGACCTGG----------GCCA-TCTGTCCCCTTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396839 41 + 171630274 CTCCACAACTCAGAACCCCCAG---------GGACCTGG----------ACCA-GGGGTCT-----
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     852087 41 -   1771730 CCCCACAACTCAGAGCCACCAG---------GGACCTGG----------ACCA-GGGGTCT-----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     337859 42 -    383796 CCCCACAACTCAGAGCCACGAG---------GGACCTGG----------ACCATGGGGTCT-----
i aotNan1.NW_018496904v1   I 26 C 0
s otoGar3.GL873550           268816 46 +  18854210 ACTCATGACTCAGCTTCACCAG---------GGCCCAGA----------GTCA-CCTATTCCCTTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58059633 60 -  94987271 -----GGCCACAGAGGCAGCTGTTGCAATCATAACCTAGTTTCCACAACATCA-CCTGAAACCTTT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26308456 45 +  26524999 AATCATGACTCAGCTTCCCCAA----------GCCCTGG----------GTCA-CCCACCCCCTCC
i canFam3.chr35            C 0 I 3100
e micMur3.chr6               315471 254 + 123392446 I
e dasNov3.JH580105            15572 103 -     45298 I
e proCoq1.NW_012149775v1     120221 175 -   1411461 I
e saiBol1.JH378341           219194 2345 +    515838 M

a score=518315.000000
s hg38.chr6_GL000254v2_alt  1440054 80 +   4827813 CATGACCAT-----GGGGTGTGTGACTGCGGGAGGCTGAAAGTGTCAGCACTGTGACCTGGAAATATATGCC--TGGATTGGGGAGG-------
s panTro5.chr6             30309430 79 + 175400573 -ATGACCAT-----GGGGTGTGTGACTGCAGGAGGCTGAAAGTGTCAGCACTGTGACCTGGAAATATATGCC--TGGATTGGGGAGG-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30543923 79 + 173848474 -ATGACCAT-----GGGGTGTGTGACTGCAGGAGGCTGAAAGTGTCAGCACTGTGACCTGGAAATATATGCC--TGGATTGGGGAGG-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250869 79 +   2037526 -ATGACCAT-----GGGGTGTGTGACTGCAGGAGGCTGAAAGTGTCAGCACTGTGACCTGGAAATATATGCC--TGGACTGGGGAGG-------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74917930 80 + 122973662 CATGACCAT-----GGGGTCTGTGACTGCGGGAGGCTGAAAGTGTCAGCACTGTGACCTGGAAATATATGCC--TGGATTGAGGAGG-------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797252 64 + 172585720 CATGACCAT---------------------GGAGGCTGAAAGTGTCAGCACTGTGACCTGGAATTATATGCC--TGGACTGGGGAGG-------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086771 64 - 170955103 CATGACCAT---------------------GGAGGCTGAAAGTGTCAGCACTGTGACCTGGAATTATATGCC--TGGACTGGGGAGG-------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336094 64 +   1495729 CATGACCAT---------------------GGAGGCTGAAAGTGTCAGCACTGTGACCTGGAATTATATGCC--TGGACTGGGGAGG-------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     433954 64 -    863181 CATGACCAT---------------------GGAGGCTGAAAGTGTCAGCACTGTGACTTGGAATTATATGCC--TGGACTGGGGAGG-------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586046 64 -  71996105 CATGACCAT---------------------GGAGGCTGAAAGTGTCAGCACTGTGACCTGGAATTATATGCC--TGGACTGGGGAGG-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278042 64 -    735854 CATGACCAT---------------------GGAGGCTGAAAGTGTCAGCACTGTGACCTGGAATTATATGCC--TGGACTGGGGAGG-------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224093 64 -   1829203 CATGACCAT---------------------GGAGGCTGAAAGTGTCAGCACTGTGACCTGGAATTATATGCC--TGGACTGGGGAGG-------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396880 64 + 171630274 -GTGACTGC--------------------GGGGGGCTGAAACTGTCAGCCGTGTGACCTGAGATTGTACGCC--TGGATTCTGGAGG-------
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     852128 64 -   1771730 -GTGACTGC--------------------AGGGGGCTGAAACTGTCGGCCATGTGACCTGAAATTATACTCC--TGGATTCTGGAGG-------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     337901 64 -    383796 -GTGACTGC--------------------AGGGGGCTGAAACTGTCAGCCCTGTGACCTGAAATTATACTCC--TGGATTCTGGAGG-------
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           268862 82 +  18854210 CATGGTCATGGGTGGGGGTCAGTAACTG--TGGGGCTGAATGCGTCAGCCCTGTGACCTGAGATTATATGGT--TAGGTTAGAAGT--------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58059693 66 -  94987271 CATGGACAT----------------------------AGAAGTGGCGACTTTGGAGATTGAAAGTGTCTGTCTTTgggctggagagacagttgg
i mm10.chr17               C 0 C 0
e micMur3.chr6               315471 254 + 123392446 I
e dasNov3.JH580105            15572 103 -     45298 I
e proCoq1.NW_012149775v1     120221 175 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M

a score=273947.000000
s hg38.chr6_GL000254v2_alt  1440134 28 +   4827813 TGGACACCTTGGAAATAAACTCCAGACT
s panTro5.chr6             30309509 28 + 175400573 TGGACACCTTGGAAATAAACTCCAGACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544002 28 + 173848474 TGGACACCTTGGAAATAAACTCCAGACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250948 28 +   2037526 TGGACACCTTGGAAATAAACTCCAGACT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918010 28 + 122973662 TGGACACCTTGGAAATAAACTCCAGACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797316 27 + 172585720 TGGACACCTTGGAAATAAACTCCAGAC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086835 27 - 170955103 TGGACACCTTGGAAATAAACTCCAGAC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336158 27 +   1495729 TGGACACCTTGGAAATAAACTCCAGAC-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434018 27 -    863181 TGGACACCTTGGAAATAAACTCCAGAC-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586110 27 -  71996105 TGGACACCTTGGAAATAAACTCCAGAC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278106 27 -    735854 TGGACACCTTGGAAATAAACTCCAGAC-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224157 27 -   1829203 TGGACACCTTGGAAATAAACTCCAGAT-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396944 27 + 171630274 TGGATGCCTTGGAAATAAACTCCAGAC-
i calJac3.chr4             C 0 I 1
s cebCap1.NW_016107755v1     852192 27 -   1771730 TAGATGCCTTGGAAATAAACTCCAGAA-
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496904v1     337965 27 -    383796 TGGATGCCTTGGAAATAAACTCCAGAC-
i aotNan1.NW_018496904v1   C 0 I 8
s proCoq1.NW_012149775v1     120396 27 -   1411461 TGGACAACTTGGAAATAAACTTGAGAC-
i proCoq1.NW_012149775v1   I 175 I 1
s otoGar3.GL873550           268944 27 +  18854210 TGGACATCTTGGAGATAAACTTGATAT-
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58059759 12 -  94987271 tgg-----ttgggagca-----------
i mm10.chr17               C 0 C 0
e micMur3.chr6               315471 254 + 123392446 I
e dasNov3.JH580105            15572 103 -     45298 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M

a score=30006.000000
s hg38.chr6_GL000254v2_alt  1440162 4 +   4827813 TCCT
s panTro5.chr6             30309537 4 + 175400573 TCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544030 4 + 173848474 TCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250976 4 +   2037526 TCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918038 4 + 122973662 TCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797343 3 + 172585720 -CCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086862 3 - 170955103 -CCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336185 3 +   1495729 -CCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434045 3 -    863181 -CCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586137 3 -  71996105 -CCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278133 3 -    735854 -CCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224184 3 -   1829203 -CCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396972 4 + 171630274 TCct
i calJac3.chr4             I 1 C 0
s cebCap1.NW_016107755v1     852220 4 -   1771730 TCct
i cebCap1.NW_016107755v1   I 1 C 0
s proCoq1.NW_012149775v1     120424 4 -   1411461 TGCT
i proCoq1.NW_012149775v1   I 1 C 0
s otoGar3.GL873550           268972 4 +  18854210 TGCT
i otoGar3.GL873550         I 1 C 0
e micMur3.chr6               315471 254 + 123392446 I
e mm10.chr17               58059771 0 -  94987271 C
e dasNov3.JH580105            15572 103 -     45298 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M
e aotNan1.NW_018496904v1     337992 8 -    383796 I

a score=12000.000000
s hg38.chr6_GL000254v2_alt  1440166 1 +   4827813 C
s panTro5.chr6             30309541 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544034 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250980 1 +   2037526 C
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918042 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797346 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086865 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336188 1 +   1495729 C
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434048 1 -    863181 C
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586140 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278136 1 -    735854 C
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224187 1 -   1829203 C
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     852224 1 -   1771730 c
i cebCap1.NW_016107755v1   C 0 I 2
s proCoq1.NW_012149775v1     120428 1 -   1411461 C
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           268976 1 +  18854210 C
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58059771 1 -  94987271 c
i mm10.chr17               C 0 C 0
e micMur3.chr6               315471 254 + 123392446 I
e dasNov3.JH580105            15572 103 -     45298 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M
e aotNan1.NW_018496904v1     337992 8 -    383796 I
e calJac3.chr4             30396976 0 + 171630274 C

a score=64414.000000
s hg38.chr6_GL000254v2_alt  1440167 7 +   4827813 TATTTGA
s panTro5.chr6             30309542 7 + 175400573 TATTTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544035 7 + 173848474 TATTTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250981 7 +   2037526 TATTTGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918043 7 + 122973662 TATTTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797347 7 + 172585720 TATTTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086866 7 - 170955103 TATTTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336189 7 +   1495729 TATTTGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434049 7 -    863181 TATTTGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586141 7 -  71996105 TATTTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278137 7 -    735854 TATTTGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224188 7 -   1829203 TATTTGA
i colAng1.NW_012115577v1   C 0 C 0
s proCoq1.NW_012149775v1     120429 7 -   1411461 TATTTGA
i proCoq1.NW_012149775v1   C 0 I 301
s otoGar3.GL873550           268977 7 +  18854210 TATTTGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58059772 7 -  94987271 tgtctga
i mm10.chr17               C 0 C 0
e micMur3.chr6               315471 254 + 123392446 I
e dasNov3.JH580105            15572 103 -     45298 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M
e aotNan1.NW_018496904v1     337992 8 -    383796 I
e cebCap1.NW_016107755v1     852225 2 -   1771730 I
e calJac3.chr4             30396976 0 + 171630274 C

a score=58235.000000
s hg38.chr6_GL000254v2_alt  1440174 10 +   4827813 AAAATTTTGT
s panTro5.chr6             30309549 10 + 175400573 AAAATTTTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544042 10 + 173848474 AAAATTTTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250988 10 +   2037526 AAAATTTTGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918050 10 + 122973662 AAAATTTTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797354 10 + 172585720 AAAGTTTTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086873 10 - 170955103 AAAGTTTTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336196 10 +   1495729 AAAGTTTTGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434056 10 -    863181 AAAGTTTTGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586148 10 -  71996105 AAAGTTTTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278144 10 -    735854 AAAGTTTTGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224195 10 -   1829203 AAAGTTTTGT
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           268984 10 +  18854210 CAAGTTTCTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58059779  1 -  94987271 ---------t
i mm10.chr17               C 0 C 0
e micMur3.chr6               315471 254 + 123392446 I
e dasNov3.JH580105            15572 103 -     45298 I
e proCoq1.NW_012149775v1     120436 301 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M
e aotNan1.NW_018496904v1     337992  8 -    383796 I
e cebCap1.NW_016107755v1     852225  2 -   1771730 I
e calJac3.chr4             30396976  0 + 171630274 C

a score=533163.000000
s hg38.chr6_GL000254v2_alt  1440184 114 +   4827813 ggccggaagcgttggctcaagcctgtaatctcagcactttgggaggccgaggca-ggtggatcacgag--gtcaggagatcg-gaccaa-ctggctatggtgaaaccccatctctacta
s panTro5.chr6             30309559 115 + 175400573 ggccgggagcgttggctcaagcctgtaatcttagcactttgggaggccgaggca-ggtggatcacgag--gtcaggagatcgagaccat-ctggctacggtgaaaccctgtctctacta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544052 115 + 173848474 ggccgggagcgttggctcaagcctgtaatctcagcactttgggaggccgaggca-ggtggatcacgag--gtcaggagatcaagaccat-ctggctacggtgaaaccctgtctctacta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     250998 115 +   2037526 ggccgggagcgttggctcaagcctgtaatctcagcactttgggaggccgaggca-ggtggatcacgag--gtcaggagatcgagaccat-ctggctacggtgaaaccctgtctctacta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918060 116 + 122973662 gaccgggagcattggctcaagcctgtaatcccagcactttgggaggccaaggcg-ggcagatcacgag--gttaggagatcgagaccatcctggctaaggtgaaacccagtctctacta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797364 116 + 172585720 ggctgggagtggtggctgaagcctgtaatcctagcactttgggaggccgaggca-ggcggatcacgag--gtcagaagatcgagaccatcctggctacagtgaaaccccgtctctacta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086883 116 - 170955103 Agctgggagtggtggctgaagcctgtaatcctagcactttgggaggccgaggca-ggcggatcacgag--gtcagaagatcgagaccatcctggctacggtgaaaccccgtctctacta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336206 116 +   1495729 ggctgggagtggtggctgaagcctgtaatcctagcactttgggaggccgaggca-ggcggatcacgag--gtcagaagatcgagaccatcctggctacggtgaaaccccgtctctacta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434066 116 -    863181 ggctgggagtcatggctcaagcctgtaatcctagcactttgggaggccgaggca-ggcggatcacgag--gtcagaagattgagaccatcctggctacggtgaaaccccgtctctacta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586158 116 -  71996105 ggctgggagtggtggctcaagcctgtaatcctagcactttgggaggccgaggca-ggcggatcatgag--gtcagaagatcgagaccatcctggctacggtgaagccccatctctaata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278154 116 -    735854 ggctgggagtgatggctcaagcctgtaatcctagcactttgggaggccgaggca-ggcggatcacgag--gtcagaagatcgagaccatcctggctacggtgaaaccccgtctctacta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224205 116 -   1829203 ggctgggagtggtggctcaagcctgtaatcccagcactttgggaggccgaggca-ggcggatcacgag--gtcagaagatggagaccatcctggctacggtgaaaccccgtctctacta
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           268994  31 +  18854210 G-------------------------------------------------------------------------------------CAT--TGAATATAGTTGAACTATAT-TCTACTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58059780  81 -  94987271 tatccagag----gacccaggttcg-attctcagcatt------------gacatggtggttcataagccatcagtaactccagACT---------------------CATATGCACta
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            15675  32 -     45298 GGCTGGGAGCACCGGCTCTTACTGG--ATC---GCAC----------------------------------------------------------------------------------
i dasNov3.JH580105         I 103 C 0
e micMur3.chr6               315471 254 + 123392446 I
e proCoq1.NW_012149775v1     120436 301 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M
e aotNan1.NW_018496904v1     337992   8 -    383796 I
e cebCap1.NW_016107755v1     852225   2 -   1771730 I
e calJac3.chr4             30396976   0 + 171630274 C

a score=21089.000000
s hg38.chr6_GL000254v2_alt  1440298 6 +   4827813 aacaaa
s panTro5.chr6             30309674 6 + 175400573 aacaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544167 6 + 173848474 aacaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     251113 6 +   2037526 aacaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918176 6 + 122973662 aacaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797480 3 + 172585720 ---aaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30086999 3 - 170955103 ---aaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336322 3 +   1495729 ---aaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434182 3 -    863181 ---aaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586274 3 -  71996105 ---aaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278270 3 -    735854 ---aaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224321 3 -   1829203 ---aaa
i colAng1.NW_012115577v1   C 0 C 0
s mm10.chr17               58059861 6 -  94987271 aataaa
i mm10.chr17               C 0 I 170
e micMur3.chr6               315471 254 + 123392446 I
e dasNov3.JH580105            15707 0 -     45298 C
e proCoq1.NW_012149775v1     120436 301 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M
e otoGar3.GL873550           269025 0 +  18854210 C
e aotNan1.NW_018496904v1     337992 8 -    383796 I
e cebCap1.NW_016107755v1     852225 2 -   1771730 I
e calJac3.chr4             30396976 0 + 171630274 C

a score=204215.000000
s hg38.chr6_GL000254v2_alt  1440304 36 +   4827813 atac-aaaaaattagccgggcatggtggcaggcacct
s panTro5.chr6             30309680 36 + 175400573 atac-aaaaaattagccgggcatggtggcaggcacct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544173 36 + 173848474 atac-aaaaaattagctgggcatggtggcaggcacct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     251119 36 +   2037526 atac-aaaaaattagccgggcatggtggcaggcacct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918182 36 + 122973662 atac-aaaaaattagccgggcgtggtggcaggcacct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797483 36 + 172585720 atac-aaaaaattggccgggcgtggtggcgggcgcct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30087002 36 - 170955103 atac-aaaaaattagccgggcgtggtggcgggcgcct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336325 36 +   1495729 atac-aaaaaattagccgggcgtggtggcgggcgcct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434185 37 -    863181 atacaaaaaaattcgccgggcgtggtggcgggcgcct
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586277 36 -  71996105 atac-aaaaaattagccgggcgtggtggtgggcgcct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278273 36 -    735854 atac-aaaaaattagccgggcgtggtggcgggtgcct
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224324 36 -   1829203 atac-aaaaaattagccgggcgtggtggccggcgcct
i colAng1.NW_012115577v1   C 0 C 0
s dasNov3.JH580105            15707 24 -     45298 -------------AGCTGGGCCTGGGGTTAGACACTT
i dasNov3.JH580105         C 0 I 32
e micMur3.chr6               315471 254 + 123392446 I
e mm10.chr17               58059867 170 -  94987271 I
e proCoq1.NW_012149775v1     120436 301 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M
e otoGar3.GL873550           269025  0 +  18854210 C
e aotNan1.NW_018496904v1     337992  8 -    383796 I
e cebCap1.NW_016107755v1     852225  2 -   1771730 I
e calJac3.chr4             30396976  0 + 171630274 C

a score=683978.000000
s hg38.chr6_GL000254v2_alt  1440340 155 +   4827813 gtagtcccagctactgtggaggctgaggcaggagaatggcatgaacccgggaggcagagcttgcagtgagccgagatcgcaccactgccctccagcctaggcaacagagcaagagtctgtctc-------aaaaaaaaaaaaaaaaaaagaaaaaaaaaaaa
s panTro5.chr6             30309716 138 + 175400573 gtagtcccagctactgtggaggctgaggcagaagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcaccactgccctctagcctgggcaacagagcaagagtctgtctc-------aaaaaaaaaaaaaaa-----------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544209 138 + 173848474 gtagtcccagctactgtggaggctgaggcagaagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcaccactgccctctagcctgggcaacagagcaagagtctgtcta-------caaaaaaaaaaaaag-----------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     251155 138 +   2037526 gtagtcccagctactgtggaggctgaggcagaagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcaccactgccctccagcctgggcaacagagcaagagtctgtctc-------aaaaaaaaaaaaaaa-----------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918218 138 + 122973662 gtagtcccagctactgtggaagctgaggcagga-aatggcgtgaacctgggaggcggggcttgcagtgagcctagatcgcaccactgcactctagcctgggtgacagagcaagattctgtctc-------agaaaaaaaaaaaaa----------------a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797519 136 + 172585720 gtagtcccagctactctggaggctgaagcaggagaatggcgtgaacctgggaggcggagcttgcagtaagttgagattgtgctactgcactccagcctgggcgacagagggaaactctgtctc---------aaaaaaaaaaaaa-----------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30087038 134 - 170955103 gtagtcccagctactctggaggctgaagcaggagaatggcgtgaacctgggaggcggagcttgcagtaagttgagattgtgctactacactccagcctgggcgacagagggaaactctgtct-----------aaaaaaaaaaaa-----------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336361 130 +   1495729 gtagtcccagctactctggaggctgaagcaggagaatggcgtgaacctgggaggcggagcttgcagtaagttgagattgtgctactgcactccagcctgggcgacagaggaaaactctgtct---------------caaaaaaa-----------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434222 137 -    863181 gtagtcccagctactctggaggctgaagcaggagaatggcgtgaacccgggaggcggaacttgcagtaagttgagattgtgctactgcactccagcctgggcgacagaggaaaactctgtctc--------aaaaaaaaaaaaaa-----------------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586313 145 -  71996105 gtagtcccagctactctggaggctgaagcaggagaatggcgtgaacctgggaggcggagcttgcagtaagttgagattgtgctactgcacttcagcctgggcgacagagggaaactctgtctcaaaaaaaaaaaaaaaaaaaaaa-----------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278309 137 -    735854 gtagtcccagctactctggaggctgaagcaggagaatggcgtgaacccgggaggcggaacttgcagtaagttgagattgtgctactgcactccagcctgggcgacagaggaaaactctgtctc--------aaaaaaaaaaaaaa-----------------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224360 135 -   1829203 gtagtcccagctactctggagactgaagcaggagaatggcgtgaacccgggaggcggagcttgcagtaagttgagattgtgctactgcactccagcctgggcgacagagggaaactctgtctc----------aaaaaaaaaaaa-----------------
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               315471 254 + 123392446 I
e mm10.chr17               58059867 170 -  94987271 I
e dasNov3.JH580105            15731  32 -     45298 I
e proCoq1.NW_012149775v1     120436 301 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M
e otoGar3.GL873550           269025   0 +  18854210 C
e aotNan1.NW_018496904v1     337992   8 -    383796 I
e cebCap1.NW_016107755v1     852225   2 -   1771730 I
e calJac3.chr4             30396976   0 + 171630274 C

a score=6608.000000
s hg38.chr6_GL000254v2_alt  1440495 3 +   4827813 gaa
s panTro5.chr6             30309854 3 + 175400573 gaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544347 1 + 173848474 --a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     251293 3 +   2037526 gaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918356 3 + 122973662 gaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797655 1 + 172585720 --a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30087172 1 - 170955103 --a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336491 1 +   1495729 --a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434359 1 -    863181 --a
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586458 1 -  71996105 --a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278446 1 -    735854 --a
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224495 1 -   1829203 --a
i colAng1.NW_012115577v1   C 0 C 0
s mm10.chr17               58060037 3 -  94987271 GAA
i mm10.chr17               I 170 C 0
e micMur3.chr6               315471 254 + 123392446 I
e dasNov3.JH580105            15731 32 -     45298 I
e proCoq1.NW_012149775v1     120436 301 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M
e otoGar3.GL873550           269025 0 +  18854210 C
e aotNan1.NW_018496904v1     337992 8 -    383796 I
e cebCap1.NW_016107755v1     852225 2 -   1771730 I
e calJac3.chr4             30396976 0 + 171630274 C

a score=6695.000000
s hg38.chr6_GL000254v2_alt  1440498 1 +   4827813 a
s panTro5.chr6             30309857 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544348 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     251296 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918359 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797656 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30087173 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336492 1 +   1495729 a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434360 1 -    863181 a
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586459 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278447 1 -    735854 a
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224496 1 -   1829203 a
i colAng1.NW_012115577v1   C 0 C 0
s micMur3.chr6               315725 1 + 123392446 A
i micMur3.chr6             I 254 C 0
s mm10.chr17               58060040 1 -  94987271 G
i mm10.chr17               C 0 C 0
e dasNov3.JH580105            15731 32 -     45298 I
e proCoq1.NW_012149775v1     120436 301 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M
e otoGar3.GL873550           269025 0 +  18854210 C
e aotNan1.NW_018496904v1     337992 8 -    383796 I
e cebCap1.NW_016107755v1     852225 2 -   1771730 I
e calJac3.chr4             30396976 0 + 171630274 C

a score=68517.000000
s hg38.chr6_GL000254v2_alt  1440499 9 +   4827813 aGTTTTTTG
s panTro5.chr6             30309858 9 + 175400573 aGTTTTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544349 9 + 173848474 aGTTTTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     251297 9 +   2037526 aGTTTTTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918360 9 + 122973662 aGTTTTTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797657 9 + 172585720 aGCTTTTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30087174 9 - 170955103 aGCTTTTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336493 9 +   1495729 aGCTTTTTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434361 9 -    863181 aGCTTTTTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586460 9 -  71996105 aGCTTTTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278448 9 -    735854 aGCTTTTTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224497 9 -   1829203 aGCTTTTTG
i colAng1.NW_012115577v1   C 0 C 0
s micMur3.chr6               315726 9 + 123392446 AGTTTCTTG
i micMur3.chr6             C 0 C 0
s mm10.chr17               58060041 9 -  94987271 AGTTTTTAC
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            15763 9 -     45298 AGTCTCCTG
i dasNov3.JH580105         I 32 C 0
e proCoq1.NW_012149775v1     120436 301 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M
e otoGar3.GL873550           269025 0 +  18854210 C
e aotNan1.NW_018496904v1     337992 8 -    383796 I
e cebCap1.NW_016107755v1     852225 2 -   1771730 I
e calJac3.chr4             30396976 0 + 171630274 C

a score=134094.000000
s hg38.chr6_GL000254v2_alt  1440508 17 +   4827813 CATTGAACTGGA-----TTCTG
s panTro5.chr6             30309867 17 + 175400573 CATTGAACTGGA-----TTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544358 17 + 173848474 CATTGAACTGGA-----TTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     251306 17 +   2037526 CATTGAACTGGA-----TTCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918369 17 + 122973662 CATTGAACTGGA-----TTCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797666 17 + 172585720 CATTGAGCAGGA-----TTCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30087183 17 - 170955103 CATTGAGCAGGA-----TTCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336502 17 +   1495729 CATTGAACAGGA-----TTCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434370 17 -    863181 CATTGAACAGGA-----TTCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586469 22 -  71996105 CATTGAACAGGATTCTGTTCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278457 17 -    735854 CATTGAACAGGA-----TTCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224506 17 -   1829203 CATTGAACAGGA-----TTCTG
i colAng1.NW_012115577v1   C 0 C 0
s micMur3.chr6               315735 17 + 123392446 CATTGAACTGGA-----TTCTA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     120737 17 -   1411461 CATTGAACTGGA-----TTCTA
i proCoq1.NW_012149775v1   I 301 C 0
s mm10.chr17               58060050 16 -  94987271 AACTGAGTT-GA-----TTCTA
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            15772 17 -     45298 CCTCGACCTGGG-----GTCTG
i dasNov3.JH580105         C 0 C 0
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M
e otoGar3.GL873550           269025  0 +  18854210 C
e aotNan1.NW_018496904v1     337992  8 -    383796 I
e cebCap1.NW_016107755v1     852225  2 -   1771730 I
e calJac3.chr4             30396976  0 + 171630274 C

a score=533413.000000
s hg38.chr6_GL000254v2_alt  1440525 62 +   4827813 CACATATCTAT--ACACATGC--TCCAATCCCACTAATTCATC-TTTTTTCCCAATGCCCAACCTAA
s panTro5.chr6             30309884 61 + 175400573 CACACATCTAT--ACACATGC--CCCAATCCCACTAATTCATC-TTTTT-CCCAATTCCCCACCTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544375 60 + 173848474 CACACATCTAT--ACACATGC--CCCAATCCCACTAATTCATC-TTTT--CCCAATTCCCCACCTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     251323 61 +   2037526 CACACATCTAC--ACACATGC--CCCAATCCCACTAATTCATC-TTTTT-CCCAATTCCCCACCTAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918386 61 + 122973662 CACACATCTAT--ACACATGC--CCCAACCCCACTAATTCATC-TTTTT-CCCAATTCCCCACCTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797683 61 + 172585720 CACACGTATAT--ACACATGC--CCCAACTCCACTAATTCATC-TTTTT-CCCAATTCCCCACCTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30087200 61 - 170955103 CACACGTATAT--ACACATGC--CCCAACTCCACTAATTCATC-TTTTT-CCCAATTCCCCACCTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336519 61 +   1495729 CACACGTATAT--ACACATGC--CCCAACTCCACTAATTCATC-TTTTT-CCCAATTCCCCACCTAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434387 61 -    863181 CACACGTATAT--ACACATGC--CCCAACTCCACTAATTCATC-TTTTT-CCCAATTCCCCACCTAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586491 61 -  71996105 CACACGTATAT--ACACATGC--CCCAACTCCACTAATTCATC-TTTTT-CCCAATTCCCCACCTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278474 61 -    735854 CACACGTATAT--ACACATGC--CCCAACTCCACTAATTCATC-TTTTT-CCCAATTCCCCACCTAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224523 61 -   1829203 CACACGTATAT--ACACATGC--CCCAACTCCACTAATTCATC-TTTTT-CCCAATTCCCCACCTAA
i colAng1.NW_012115577v1   C 0 C 0
s micMur3.chr6               315752 62 + 123392446 CACACATATATACACACATGC--TCCAACCCCACTAATTCATC-TTTTT-CCCAG-TTCCCACATGA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     120754 61 -   1411461 CACACACATAT--ACACATGC--TCCAACCCCACTAATTCATC-TTTTT-CCCAGTTTCCCACCTAA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           269025 62 +  18854210 CATACATATAC--ACACATGC--CCCAACTCCACTAATTCATCTTTTTT-CTCAATTTCCCACCTAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58060066 58 -  94987271 --CAAGTATAA--ACCCATACATCCTAAACACATTAATTCATT-TC----CTCAACTCCCCACTGAA
i mm10.chr17               C 0 I 184
s dasNov3.JH580105            15789 50 -     45298 --------TGG--AGACATGC-CCCCAACCCCACTATCTCGGG-CGCCC-CCAAGCCCCCTGA----
i dasNov3.JH580105         C 0 C 0
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M
e aotNan1.NW_018496904v1     337992  8 -    383796 I
e cebCap1.NW_016107755v1     852225  2 -   1771730 I
e calJac3.chr4             30396976  0 + 171630274 C

a score=399468.000000
s hg38.chr6_GL000254v2_alt  1440587 51 +   4827813 ACACTGAgag--------------aaaaaaaaagagcagcctctgacattcagaagttggcctaa----
s panTro5.chr6             30309945 51 + 175400573 ACACtgagag--------------agaaaaaaagagcagcctctgacgttcagaagttggcctaa----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544435 51 + 173848474 ACACtgagag--------------agaaaaaaagagcagcctctgacgttcagaagttggcctaa----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     251384 51 +   2037526 ACACTGAGAg-------------aaaaaaaaaagagcagcctctg-cgttcagaagttggcctaa----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918447 52 + 122973662 ACACTGAgag-------------aaaataaaaagagcagcctctgacattcagaagttggcctaa----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797744 65 + 172585720 ACCCTGAGAGAGAAAAAAAAAAAaaaaaaaaaagagcagcctctgacattcagaagttggcctaa----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30087261 65 - 170955103 ACCCTGAGAGAAAAAAAAAAAAAaaaaaaaaaagagcagcctctgacattcagaagttggcctaa----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336580 58 +   1495729 GCCCTGAGAG-------AAAAAAaaaaaaaaaagagtagcctctgacattcagaagttggcctaa----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434448 58 -    863181 ACCCTGAGAGAGAGAgaaaaaaaaaaaaaaaaaa-------tctgacattcagaagttggcctaa----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586552 62 -  71996105 ACCCTGAGAG---AAAAAAAAAAaaaaaaaaaagagcagcctctgacattcagacgttggcctaa----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278535 56 -    735854 ACCCTGAGAG---------AAAAaaaaaaaaaagagtagcctctgacattcagaagttggcctaa----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224584 56 -   1829203 ACCCTGAGAG---------GAAAaaaaaaaaaagagcagcctctgacattcagaagttggcctaa----
i colAng1.NW_012115577v1   C 0 C 0
s micMur3.chr6               315814 50 + 123392446 ACACtgagaa---------------agaaaaaagaacagcctctgacactcagaagatggcctaa----
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     120815 50 -   1411461 ACACtgagaa---------------agaaaaaagaacagcctctgacactcagaagttggcctaa----
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           269087 50 +  18854210 ACATtgagaa---------------agaacaaagaacagcctctgacattcagaagatggcctaa----
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            15839 55 -     45298 ACCCTGAGAA--------------AAGGAGAAAAAGTggcctcggacggtcagaggctggcccggaaca
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58060124 184 -  94987271 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M
e aotNan1.NW_018496904v1     337992  8 -    383796 I
e cebCap1.NW_016107755v1     852225  2 -   1771730 I
e calJac3.chr4             30396976  0 + 171630274 C

a score=30126.000000
s hg38.chr6_GL000254v2_alt  1440638 3 +   4827813 cag
s panTro5.chr6             30309996 3 + 175400573 cac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544486 3 + 173848474 cac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     251435 3 +   2037526 cac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918499 3 + 122973662 cac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797809 3 + 172585720 cag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30087326 3 - 170955103 cac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336638 3 +   1495729 cag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434506 3 -    863181 cac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586614 3 -  71996105 cac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278591 3 -    735854 cac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224640 3 -   1829203 cac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396976 3 + 171630274 cac
i calJac3.chr4             C 0 C 0
s micMur3.chr6               315864 3 + 123392446 cac
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     120865 3 -   1411461 cac
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           269137 3 +  18854210 cac
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            15894 3 -     45298 cac
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58060124 184 -  94987271 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M
e aotNan1.NW_018496904v1     337992 8 -    383796 I
e cebCap1.NW_016107755v1     852225 2 -   1771730 I

a score=275939.000000
s hg38.chr6_GL000254v2_alt  1440641 24 +   4827813 agctaaaccatgttattcacctag
s panTro5.chr6             30309999 24 + 175400573 agctaaaccacgttattcacctat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544489 24 + 173848474 agctaaaccatgttattcacctat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     251438 24 +   2037526 agctaaaccatgttattcacctat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918502 24 + 122973662 agctaaaccatgctattcacctat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797812 24 + 172585720 cgctaaaccatgttattcacctat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30087329 24 - 170955103 agctaaaccatgttattcacctat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336641 24 +   1495729 cgctaaaccatgttattcacctat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434509 24 -    863181 agctaaaccatgtttttcacctat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586617 24 -  71996105 agctaaaccatgttattcacctat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278594 24 -    735854 agctaaaccatgtttttcacctat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224643 24 -   1829203 agctaaaccatgttattcacctat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30396979 24 + 171630274 agctaaaccatgttattcacatat
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     852227 24 -   1771730 agctaaaccatgttattcacatat
i cebCap1.NW_016107755v1   I 2 C 0
s aotNan1.NW_018496904v1     338000 24 -    383796 agctaaaccatgttattcacatat
i aotNan1.NW_018496904v1   I 8 C 0
s micMur3.chr6               315867 23 + 123392446 agttaaaccatgtta-tctcctat
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     120868 23 -   1411461 agataaaccatgtta-tctcctat
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           269140 24 +  18854210 aaataaatcatattattttccttt
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            15897 23 -     45298 ggctaagccacgc-atcctcccgt
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58060124 184 -  94987271 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M

a score=2438859.000000
s hg38.chr6_GL000254v2_alt  1440665 204 +   4827813 taggcataaactatattacagaataccaatctcagacaagtttactcctagaccttgataaagtgagacaatgcaaggctgcttcacaagtttttctgagcacagatccaaaaaaaga-cactgtgccacccacaaaataccaaacaccccttctcttgg--ttaacagaaatgtt------------------------------tgctacttctttaccaattatagctttcccc
s panTro5.chr6             30310023 204 + 175400573 taggcataaactatattacagaataccaatctcagacaagtttactcctagaccttgataaagtgagacaatgcaagattgcttcataagtttttctgagcacagacccaaaaaaaga-cagtgtgccacccacaaaataccaaacaccccttctcttgg--ttaacagaaatgtt------------------------------tgctacttctttaccaattatagctttcccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544513 204 + 173848474 taggcataaactatattacagaatatcaatctcagacaagtttactcctagaccttgataaagtgagacaatgcaagattgcttcataagtttttctgagcacagacccaaaaaaaga-cactgtgccacccacaaaataccaaacaccccttctcttgg--ttaacagaaatgtt------------------------------tgctacttctttaccaattatagctttcccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     251462 204 +   2037526 taggcataaactatattacagaataccaatctcagacaagtttactcctagaccttgataaagtgagacaatgcaagattgcttcataagtttttcttagcacagacccaaaaaaaga-cacggtgccacccacaaaataccaaacaccccttctcttgg--ttaacagaaatgtt------------------------------tgctacttctttaccaattatagctttcccc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918526 204 + 122973662 taggcataaactatattacagaataccaatctcagacaagtttactcttagatcttgataaagtgagacaatgcaagtctgcttcataagtttttctgagcacagacccaaaaaaaga-caccgtgccacccacaaaatagcaaacaccccttctcttgg--ttaacagaaatgtt------------------------------tgctacttctttaccaattatagctttcccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30797836 205 + 172585720 taggcatatactatattacagaatgccaatctcagacaagtttactcttagaccttgataaagtgagacaatgtaaggttgcttcataagtttttctgagcacagacccaaaaaaaggtcactgtgccacccacaaaataccaaacacccctcctcttgg--ctaacagaaatgtt------------------------------tgctacttctttaccaattatagttttcccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30087353 205 - 170955103 taggcatatactatattacagaataccaatctcagacaagtttactcttagaccttgataaagtgagacaatgtaaggttgcttcataagtttttctgagcacagacccaaaaaaaggtcactgtgccacccacaaaataccaaacaccccttctcttgg--ctaacagaaatgtt------------------------------tgctacttctttaccaattatagttttcccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336665 205 +   1495729 taggcatatactatattacagaatgccaatctcagacaggtttactcttagaccttgataaagtgagacaatgtaaggttgcttcataagtttttctgagcacagacccaagaaaaggtcattgtgccacccacaaaataccaaacaccccttctcttgg--ctaacagaaatgtt------------------------------tgctacttctttaccaattatagttttcccc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434533 205 -    863181 taggcatatactatattacagaataccaatctcagacaaatttactcttagaccttgataaagtgagacaatgtaaggttgcttcataagtttttctgagcacagacccaagaaaaggtcactgtgccacccacgaaataccaaacaccccttctcttgg--ctaacagaaatgtt------------------------------tgctacttctttaccaattatagttttcccc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586641 205 -  71996105 taggcatgtactatattacagaataccaatctcagacaggtttactcttagaccttgataaagtgagacaatgtaaggtcgcttcataagtttttctgagcacagacccaaaaaaaggtcactgtgccacccacaaaataccaaacaccccttctcttgg--ctaacagaaatgtt------------------------------tgctacttctttaccaattatagttttcccg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278618 205 -    735854 taggcatatactatattacagaataccaatctcagacaggtttactcttagaccttgataaagtgagacaatgtaaggttgcttcataagtttttctgagcacagacccaagaaaaggtcactgtgccacccacaaaatactaaacaccccttctcttgg--ctaacagaaatgtt------------------------------tgctacttctttaccaattatagttttcccc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224667 205 -   1829203 taggcatatactatattacagaataccaatctcagacaagtttactcttagaccttgataaagtgagacaatgtaaggttgcttcataagtttttctgagcacagacccaagaaaaggtcactgtgccacccacaaaataccaaacacccgttctcttgg--ctaacagaaatgtt------------------------------tgcaacttctttaccaattatagttttcccc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30397003 202 + 171630274 taggcctaaactatattgcagaataccaatctcagaccagtttacacttagaccttgattaagtgagacaaggcaaggctgcttcataagtttgtctgagca--gacccatgaaaaggtcatcgtgccacccacaaaataccaaaca-cttttctcttgg--ctaaaagaaatgtt------------------------------tgctatttctttaccaattacagttttcccc
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     852251 205 -   1771730 taggcaaaaactacattacagaataccaatctcagacaagtttactcttagaccttgattaagtgagacaaggcaagcctgcttcataagtttgtctgagcacggacccataaaaaggtcattgtgccacccacaaaataccaaacaccccttctcttgg--ctaaaagaaatgtt------------------------------tgctacttctttaccaattacagttttcccc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     338024 203 -    383796 taggcataaactatattacagaataccaatcttagacaagtttactcttggaccttgattaagtgagacaaggcaaacctgcttcataagtttgtctgagcacagacccataaaaaggtcattgtg-ggtcaacaaaataccaaaca-cccttctcttgg--ctaaaagaaatgtt------------------------------tgctacttctttaccaattacagttttcccc
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               315890 203 + 123392446 taggcataaactatcttacagaataccagccccagacacgtttactctgagaccttgataaaattagacaaagcaagaccagttcataattttgcctgagcacaga-caaaaacaaggtgatcatg-cacccataaaataccaaacaccccttctctttg--ctaaacgaaatgat------------------------------tgctactactccaccaatcatagctttctct
i micMur3.chr6             C 0 I 2
s proCoq1.NW_012149775v1     120891 195 -   1411461 taggcataaactattgtacagaacaccagcctcagacaagttta---------cttgataaaatgagacaaagcaaggtcccctcataattctgtccgagcacaga-caaaaacaaggtcattgtgccacccagaaaatacctaacaccccttctcttgg--ctaaacgaaatgat------------------------------tggtactactctaccaatcatagctttctct
i proCoq1.NW_012149775v1   C 0 I 2
s otoGar3.GL873550           269164 204 +  18854210 taggcttaagctattttacagaataccaacctcagacaagtttactctaagaccttgattaaatgagacaaagaaaatctacttcataattttgtctgagcacaaa-tataaccaaggtcattgtgccacccccaaaataccaaataccccttctcttgg--ctaagcaaaatgat------------------------------tactactactttagcaatcatagttttctcc
i otoGar3.GL873550         C 0 I 244
s mm10.chr17               58060308 206 -  94987271 tatatataaactctcctatgtaatgccagtcttagacaagcttactcagagatcatgatacagt----catagcaaggtca---------------tgatcac-----------atgattagtgatccacacactaaataccaaacacctcttctctcaaaccaaagggaaataatattgtaaccaattttaaaaatgaccaacaacttcatttctaaaccaattatagcctatct-
i mm10.chr17               I 184 C 0
s dasNov3.JH580105            15920 176 -     45298 cagacagagcccaccccacaggat---aacctcagacaaggcta----------tgaggaaaaagagacaaagcaagg------catcattttgcccaagcacaga-aaaaaacagggtccccgggccacccctaaaccaccaaaca---ctcctcctag--ccagaatgagtg--------------------------------ggcaacttt----acacttgcagctttatcc
i dasNov3.JH580105         C 0 C 0
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M

a score=1640492.000000
s hg38.chr6_GL000254v2_alt  1440869 134 +   4827813 tcattctagtctcccctccctatagaaaatatttatttgggtattcattcacaggatctgctctgctttctaacagcatt-aatccagagcaaaccc-ccacttccttagacctttccccaaatcacctaaccaaa
s panTro5.chr6             30310227 134 + 175400573 tcattctagtcttccctccctatagaaaatacttatttgggtattcattcacaggatctgctctgctttctaacagcatt-aatccagagcaaaccc-ccacttccttagacctttccccagatcacctaaccaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544717 134 + 173848474 tcattctagtcttccctccctatagaaaatacttatttgggtattcattcacaggatctgctctgctttctaacagcatt-aatccagagcaaaccc-ccacttccttagacctttccccaaatcacctaaccaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     251666 133 +   2037526 tca-tctagtcttccctccctatagaaaatatttatttgggtattcattcacaggatctgctctgctttctaacagcatt-aatccagagcaaaccc-ccacttccttagacctttccccaaatcacctaaccaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918730 134 + 122973662 tcattctagtctcccctccctatagaaaatatttatttgggtattcattcacaggatctgctctgctttctaacagcatt-aatccagagcaaaccc-ccacttccttagacctttccccaaatcacctaaccaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30798041 132 + 172585720 tctttttagtcttccctccctatagaaaatatttatttggatattcattcacagaa--tgctctgctttctagcagcatt-aatctagagcaaaccc-ccacttccttagacttttcaccaaatcacctaaccaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30087558 132 - 170955103 tctttttagtcttccctccctatagaaaatatttatttggatattcattcacagaa--tgctctgctttctagcagcatt-aatctagagcaaaccc-ccacttccttagacttttcaccaaatcacctaaccaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     336870 132 +   1495729 tctttttagtcttccctccctatagaaaatatttatttggatattcattcacagaa--tgctctgctttctagcagcatt-aatctagagcaaaccc-ccacttccttagacttttcaccaaatcacctaaccaag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434738 132 -    863181 tcattttagtcttccctccctatggaaaatatttatttggatattcattcacagaa--tgctctgctttctagcagcatt-aatctagagcaaaccc-ccacttccttagacttttcaccaaatcatctaaccaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586846 132 -  71996105 tcattttagtcttccctccctatagaaaatatttatttggatattcattcacagaa--tgctctgctttctagcagcatt-aatctagagcaaaccc-ccacttccttagacttttcaccaaatcacctaaccaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278823 132 -    735854 tcattttagtcttccctccctatggaaaatatttatttggatattcattcacagaa--tgctctgctttctagcagcatt-aatctagagcaaaccc-ccacttccttagacttttcaccaaatcatctaaccaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     224872 132 -   1829203 tcattttagtcttccctccctatagaaaatatttatttggatattcattcacagag--tgctctgctttctagcagcatt-aatctagagcaaaccc-ccacttccttagacttttccccaaatcacctaaccaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30397205 128 + 171630274 tcattctagtctcccctgcccacagaaaatatttatttggatattcattcacagaatctgctctacttttgagc-------aatctagagaaaaccc-ccacttccttagaccttcccccaaatcacctagccaaa
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     852456 134 -   1771730 tcgttctagtctcccctccctaaagaaaatatttatttggatattcattcacagaatctgctctatttttgagcagcttt-aatctagagcaacccc-ccacttccttagaccttcccccaaatcacctagccaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     338227 134 -    383796 tcattctagtctcccctccctacagaaaatatttatttggatattcattcacagaatctgctctacttttgagcagcttt-aatctagagcaaaccc-ccacttccttagaccttcccccaaatcacctagccaaa
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               316095 131 + 123392446 tcattctagcctcccctccctatataaaagatttatgtagacattcagtaatggaatctgctctgctttctggtagtatt-aatctacagcaaaccc----cttccttagagcctcccccaaaccacctaaccaaa
i micMur3.chr6             I 2 I 1326
s proCoq1.NW_012149775v1     121088 134 -   1411461 tcattctagcctcccctccccatagaaaagatttatgtagacattcagtaagggagtctgctccactttctggcagcatt-aatctacagcaaaccc-ccacttccctagaccctccctcaaaccacctaaccaaa
i proCoq1.NW_012149775v1   I 2 C 0
s otoGar3.GL873550           269612 123 +  18854210 tcattctagtctcccctcccttcagaaaagttttatttagacatacactcatagaatctgccctgctttctgacagcatt-actctaaagcaaaccccccacttccttagacccttccccaaat------------
i otoGar3.GL873550         I 244 C 0
s mm10.chr17               58060514 134 -  94987271 tcattataatcttctgtatatatagataagattgcttgagatattcaaccaaacaatttatgttgttttatgacagcatt-aatttaaagcactctcttctcatacttagacccaccacaaaatcacctaactaa-
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            16096 132 -     45298 tcgtgctagtctccgttcccgacagataagagc-attgagatacccagtcgtagccttgcttccactttctggcagcgttcaagtgatagtgaaccc--cacttctgtggaccctcccccaagtcacccaaccaa-
i dasNov3.JH580105         C 0 C 0
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M

a score=1374883.000000
s hg38.chr6_GL000254v2_alt  1441003 134 +   4827813 acccaaaccctatcataggttttttcctaa--cactcttattaaaatgtcccacactccccatggggtgcattctccattgctgcaaggagtaataaacccagcatgtttaatgacagttatgttcctggggggtc
s panTro5.chr6             30310361 134 + 175400573 acccaaatcctatcataggttttttcctaa--cactcttattaaaatgtcccacactccccatggggtgcattctccattgctgcaaggagtaataaacccagcatgtttaatgacagttatgttcctggggggtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544851 134 + 173848474 acccaaatcctatcataggttttttcctaa--cactcttattaaaatgtcccacactccccatggggtgcattctccattgctgcaaggagtaataaacccagcatgtttaatgacagttatgttcctggggggtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     251799 134 +   2037526 acccaaaccctatcataggttttttcctaa--cactcttattaaaatgtcccacactccccatggggtgcattctccattgctgcaaggagtaataaacccagcatgtttaatgacagttatgttcctggggggtc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918864 134 + 122973662 acccaaatcctatcataggttttttcctaa--cactcttattgagatgtcccacactccccatggggtgcattctccattgctgcaaggagtaataaacccagcgtgtttaatgacagttatattcctggggggtc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30798173 134 + 172585720 acccaaatcctatcacagtttttttcctag--cactcttattgagatgtccctcactccccgtggggtacattcttccttgctacaaggagtaataaactcagcgtgtttaatgaccgttatgttcctggggggtc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30087690 134 - 170955103 acccaaatcctatcacagtttttttcctaa--cactcttattgagatgtccctcactccccgtggggtacgttcttcctcgctacaaggagtaataaactcagcgtgtttaatgaccgttatgttcctggggggtc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     337002 134 +   1495729 acccaaatcctatcacagtttttttcctaa--cactcttattgagatgtccctcactccccgtggggtacgttcttcctcgctacaaggagtaataaactcagcgtgtttaatgaccattatgttcctggggggtc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     434870 134 -    863181 acccaaatcctatcacagtttttttcctaa--cactcttattgagatgtccctcactcctcgtggggtacattcttccttgctacaaggagtaataaactcagcgtgtttaatgaccgttgtgttcctggggggtc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29586978 134 -  71996105 acccaaatcctatcacagcttttttcctaa--cactcttattgagatgtccctcactccccgtggggtacattcttccttgctacaaggagtaataaattcagcatgtttaatgaccattatgttcctggggggtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     278955 134 -    735854 acccaaatcctatcacagtttttttcctaa--cactcttattgagatgtccctcactccccgtggggtacattcttccttgctacaaggagtaataaactcagcgtgtttaatgaccgctatgttcctgggggatc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     225004 134 -   1829203 acccaaatcctatcacagcttttttcctaa--cactctgattgagatgtccctcactccccgtggggtacattcttccttgctacaaggagtaataaactcagcgtgtttaatgaccgttatgttcctggggggtc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30397333 134 + 171630274 gcccaaatcctatcataggctttttcctaa--cactcttattgatatggcccatgctccctatggggtgcattctcccttgctgtaaggagtaataaacccagcgtgttcaatggcagttatgttcctggagggtc
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     852590 134 -   1771730 gcccaaatcctatcataggctttttcctaa--cactcttattgagatgggccacactccctatggggtgcgttctcccttgctgcaaggagtaataaacccagcgtgttcaatggcagttatgttcctgggggatc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     338361 134 -    383796 gcccaaatcctatcataggctttttcctaa--cactgttattgagatggcccacgctccctatggggtgcattctcccttgctgcaaggagtaataaacccagcgtgttcaatggcagttgtgttcctagggggtc
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     121222 134 -   1411461 gccccaatgctataatccatttctttctcaaccactcttactgaggtgtcccacatgccc-atggggcacattctctctctctgcagggagtaataaacccaacttgttcaatgacaggtgtgttcctggggatc-
i proCoq1.NW_012149775v1   C 0 I 25
s otoGar3.GL873550           269735 127 +  18854210 --------cctatgataagttttgtcctaaggcagccttattgagaagtctcacattccctatgagctaccttctgcctatctgcaaggaataataaacccaacttgttcaatgacatgtgtgttcctgagggtc-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58060648  96 -  94987271 gccccaactcCGGGAGAGGTTC-------A--CAT---------GACTCCCCCAATTTCTAGCGAGGTGCAGTCTTACTCCATGCAAGAAACACTAAAACCAG----------------------CCTGGGGATTC
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            16228 129 -     45298 gcccacatccttcgacaagtttcttcctg---cgccctctgtgagaggccgcaccgttccccatgcgtgcg-tcttccctgccgcagtgtgtcgtgaacccaccttgctcagctgcaggtgtgttcctgggtc---
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               316226 1326 + 123392446 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M

a score=220093.000000
s hg38.chr6_GL000254v2_alt  1441137 22 +   4827813 -tttggctggaaaacacGGGTAA
s panTro5.chr6             30310495 22 + 175400573 -tttggctggaaaacacggataA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30544985 22 + 173848474 -tttggctggaaaacacggataA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     251933 22 +   2037526 -tttggctggaaaacacggataA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74918998 22 + 122973662 -tttggctggaaaacacGGGTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30798307 22 + 172585720 -tttggctggaaaatacggataA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30087824 22 - 170955103 -tttggctggaaaatacggataA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     337136 22 +   1495729 -tttggctggaaaatacggataA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     435004 22 -    863181 -tttggctggaAAATATGGATAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29587112 22 -  71996105 -tttggctggaaaatacggataA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     279089 22 -    735854 -tttggctggaAAATATGGATAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     225138 22 -   1829203 -tttggctggaaaatacggataA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30397467 22 + 171630274 -tttgtctggaaaacacggataA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     852724 22 -   1771730 -tttggctggaaaacacggataA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     338495 22 -    383796 -tttggctggaaaacacggataA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           269862 22 +  18854210 -tttggctgaaggacattgataA
i otoGar3.GL873550         C 0 I 4
s mm10.chr17               58060744 21 -  94987271 -TTTGGCTG-AGGACATCTATCA
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            16357 16 -     45298 cttTG-----AGAACTCAGGG--
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               316226 1326 + 123392446 I
e proCoq1.NW_012149775v1     121356 25 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M

a score=427252.000000
s hg38.chr6_GL000254v2_alt  1441159 34 +   4827813 CA----GTG-TTCTTTGCTT-----------CCTTCTTAACTCTCTGGGA
s panTro5.chr6             30310517 38 + 175400573 CACTCAGTG-TTCTTTGCTT-----------CCTTCTTAACTCTCTGGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30545007 38 + 173848474 CACTCAGTG-TTCTTTGCTT-----------CCTTCTTAACTCTCTGGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     251955 38 +   2037526 CACTCAGTG-TTCTTTGCTT-----------CCTTCTTAACTCTCTGGTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74919020 38 + 122973662 CACTCAGTG-TTCTTTGCTT-----------CCTTCTTAACTCTCTGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30798329 38 + 172585720 CACTCAGTG-TTCTTTGCTT-----------CCTTCTTAACCCTCTGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30087846 38 - 170955103 CACTCAGTG-TTCTTTGCTT-----------CCTTCTTAACCCTCTGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     337158 38 +   1495729 CACTCAGTG-TTCTTTGCTT-----------CCTTCTTAACCCTCTGGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     435026 38 -    863181 CACTCAGTG-TTCTTTGCTT-----------CCTTCTTAACCCTCTGGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29587134 38 -  71996105 CACTCAGTG-TTCTTTGCTT-----------CCTTCTTAACCCTCTGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     279111 38 -    735854 CACTCAGTG-TTCTTTGCTT-----------CCTTCTTAACCCTCTGGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     225160 38 -   1829203 CACTCAGTG-TTCTTTGCTT-----------CCTTCTTAACCCTCTGGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30397489 38 + 171630274 CACTCAGTG-TTCTTTGCTT-----------CCTTCTTAACCCTCTGGGA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     852746 38 -   1771730 CACTCAGTG-TTCTTTGCTT-----------CCTTCTTAACCCTCTGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     338517 38 -    383796 CACTCAGTG-TTCTTTGCTT-----------CCTTCTTAACCCTCTGGGT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     121381 33 -   1411461 ----CAGTG-TCCTTTTCTT-----------CCTTCTT-ACTCTCTGGGA
i proCoq1.NW_012149775v1   I 25 C 0
s otoGar3.GL873550           269888 33 +  18854210 ----CAGTG-TTCTTTTCTT-----------TCTTCTT-ACTCTCTGGGA
i otoGar3.GL873550         I 4 C 0
s mm10.chr17               58060765 50 -  94987271 TACCCAAtgtttctttgttttttgttttttgttttttTAATTTTCTGGGA
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            16373 24 -     45298 -------------TCTTCTT-----------CATTCTT-GCCCTCTGAG-
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               316226 1326 + 123392446 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           219194 2345 +    515838 M

a score=3074127.000000
s hg38.chr6_GL000254v2_alt  1441193 233 +   4827813 TCTACAT-TGAAGACCTGGCCCCATGTTGTGTGGGAGAAGCTGGTACAAAGGCAGGAGGTGCTCTTAGAAAGGACAAAACCAGTAatgcattcactcaacaaatatttatggagcacc-cacacatgccacagactgttctaggtac-caaggacaatagacaaataaagcaggatccctgaatttttaggaagctctcagttggggtagaggtgagaaacacacataaacagatc
s panTro5.chr6             30310555 233 + 175400573 TCTACAT-TGAAGACCTGGCCCCATGTTGTGTGGGAGAAGCTGGTACAAAGGCAGGAGGTGCTCTTAGAAAGGACAAAACCAGTAatgcgttcactcaacaaatatttatggagcacc-cacacatgccacagactgttctaggtac-caaggacaatagacaaataaagcaggatccctgaatttttaggaagctctcagttggggtagaggtgagaaacacacataaacagatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30545045 233 + 173848474 TCTACAT-TGAAGACCTGGCCCCATGTTGTGTGGGAGAAGCTGGTACAAAGGCAGGAGGTGCTCTTAGAAAGGACAAAACCAGTAatgcattcactcaacaaatatttatggagcacc-cacacatgccacagactgttctaggtac-caaggacaatagacaaataaagcaggatccctgaatttttaggaagctctcagttggggtagaggtgagaaacacacataaacagatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     251993 232 +   2037526 TCTACAT-TGAAGACCTGGCCCCATGTTATGTGGGAGAAGCTGGTACAAAGGCAGGAGGTGCTCTTAGAAAGGACAAAACCA-TAatgcattcactcaacaaatatttatggagcacc-cacacatgccacagactgttctaggtac-caaggacaatagacaaataaagcaggatccctgaatttttaggaagctctcagttggggtagaggtgagaaacacacataaacagatt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74919058 233 + 122973662 TCTACAT-TGAAGACCTGGCCCCATGTTGTGTGGGAGAAGCTGGTACAAAGGCAGGAAGTGCTCTTAGAAAGGACAAAATCAGTAatgcattcactcaacaaatatttatggagcacc-cacacatgccatagaccgttctaggtac-caaggacaatagacaaataaagcaggatccctgtatttttaggaagctctcagttggggtagaggtgagaaacacacataaacagatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30798367 233 + 172585720 TCTGCAT-TGAAGACCTGGCCCCATGTTGTGTGGGAGAAGCCAGTACAAAGGCAGGAGGTGCTCTTAGAGAGGACAAAGCCAGTAACGcattcactcaacaaatatttatggagcacc-cacacatgtcacagactgttctaggtgc-caaggacaatagacaaataaaacaggatccctgaattttcaggaagctctcaatcggagtagaggtgagaaacacacataaacagatc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30087884 233 - 170955103 TCTGCAT-TGAAGACCTGGCCCCATGTTGTGTGGGAGAAGCCAGTACAAAGGCAGGAGGTGCTCTTAGAGAGGACAAAGCCAGTAACGcattcactcaacaaatatttgtggagcacc-cacacatgtcacagactgttctaggtgc-caaggacaatagacaaataaagcaggatccctgaattttcaggaagctctcaatcggagtagaggtgagaaacacacataaacagatc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     337196 233 +   1495729 TATGCAT-TGAAGACCTGGCCCCATGTTGTGTGGGAGAAGCCAGTACAAAGGCAGGAGGTGCTCTTAGAAAGGACAAAGCCAGTAACGcattcactcaacaaatatttatggagcacc-cacacatgtcacagactgttctaggtgc-catggacaatagacaaataaaacaggatccctgaattttcaggaagctctcaatcggagtagaggtgagaaacacacataaacagatc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     435064 233 -    863181 TCTGCAT-TGAAGACCTGGCCCCATGTTGTGTGGGAGAAGCCAGTACAAAGGCAGGAGGTGCTCTTAGAGAGGACAAAGCCAGTAACGcattcactcaacaaatatttatggagcacc-cacacatgtcacagactgttctacgtgc-caaggacaatagacaaataaaacaggatccctgaattttcaggaagctctcaatcggagtagaggtgagaaacacacataaacagatc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29587172 233 -  71996105 TCTGCAT-TGAATACCTGGCCCCATGTTGTGTGGGAGAAGCCAGTACAAAGGCAGGAGGTGCTCTTAGAAAGGACAAAGCCAGTAACGcattcactcaacaaatatttatggagcacc-cacacatgtcacagactgttctaggtgc-caaggacaatagacaaataaaacaggatccctgaattttcaggaagctctcaatcggagtagaggtgagaaacacacataaacagatc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     279149 233 -    735854 TCTGCAT-TGAAGACCTGGCCCCATGTTGTGTGGGAGAAGCCAGTACAAAGGCAGGAGGTGCTCTTAGAAAGGACAAAGCCAGTAACGcattcactcaacaaatatttatggagcacc-cacacatgtcacagactgttctaggtgc-caaggacaatagacaaataaaacaggatccctgaattttcaggaagctctcaatcggagtagaggtgagaaacacacataaacagatc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     225198 231 -   1829203 TCTGCAT-TGAAGACCTGGCCCCATGTTGTGTGGGAGAAGCCAGTACAAAGGCAGGAGGTGCTCTTAGAAAGGACAAAGCCAGTAatgcattcactcaacaaatatttatggagcacc-cacacatgt--cagactgttctaggtgc-caaggacaatagacaaataaagcaggatccctgaattttcaggaagctctcaatcggagtagaggtgagaaacacacataaacagatc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30397527 233 + 171630274 TCTACAT-TGAAGACCTGGCCCCATGTTGTGTGGGAGAAGCTGGTACAAAGGCAGAAGGTACTCTTAGAAAGGACAAACCCAGTCatgcattcattcagcaaatatttatgaagcacc-cacgcatgccacagactgttctaggtgc-caaggacaatggacaaataaagcaggatccctggattttcaggaagctctcagttggggtagaggtgagaaacacacagaaacagacc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           221539 233 +    515838 TCTACAT-TGAAGACCTGGCCCCATGCTGTGTGGGAGAAGCTGGTACAAAGGCAGGAGGTACTCGCAGAAAGGACAGAACCAGTCatgcattcactcaacaaatatttatgaagcacc-cacgcatgccacagatggttctaggtgc-caaggacaatagacaaataaagcagaatccctggattttcaggaagctctcagctggggtagaggtgagaaacacacagaaacagacc
i saiBol1.JH378341         M 2345 C 0
s cebCap1.NW_016107755v1     852784 233 -   1771730 TCTACAT-TGAAGATCTGGCCCCATGTTGTGTGGGAGAAGCTGGTACAAAGGCAGGAGGTACTCTCAGAAAGGACAGAACCAGTCatgcattcactcaacaaatatttatgaagcacc-cacacatgccacagactgttctaggtgc-caaggacaataggcaaataaagcaggatccctggattttcaggaagctctcagttggggtagaggtgagaaacacacagaaacagacc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     338555 233 -    383796 TCTACAT-TGAAGACCCGGCCCTGTGTTGTGTGGGAGAAGCTGGTACAAAGGCAGGAGGTACTCTTAGAAAGGACAGAACCAGTCatgcattcactcaacaaatatttatgaagcacc-cacgcatgccacagactgttctaggtgc-caaggacaatagacaaataaagcaggatccctggattttcaggaagctctcagttggggtagaggtgagaaacacacagaaacagacc
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     121414 232 -   1411461 GGCACGT-TGAAAAACTGGATCCATGCTGTGTGGGGGAAGATGGTA-AAAGGCAGGAGGTATTGTCAGAAAGAACAAAACCAGCCatgcattcactcaaaaaatatttatggagcacc-cacacatgccacagactgttctaggtgc-ctagaacaacagacaaataaagcaggaatcatgaattttcaggaagctctcagttggggtgaaggtgagaaagacacataaacagatc
i proCoq1.NW_012149775v1   C 0 I 338
s otoGar3.GL873550           269921 230 +  18854210 TCCACATAAAAAAAATTAGACACATACTGTGTGGGAGAAGGTGGTA-AAAGGCATAGGGTATTGTCAGAAAGGACAAAACCAGTCTCAcattcactcaacaaatatttattgagcacc-cacacatgccaggggctgttctaggtac-taagaacaatggacaaacaaagcaggaaccttggattttcaggaagctctcagttaggatagaggtgagaaag--ccagaaacagat-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58060815 219 -  94987271 TGCACAG-AGAAGA-------CCACACTG-GTAGGAGAAGATGGTACTAA-GCAGGAGGTGGTGTCAGAAGAGACAGAG-AAGCTATGATGCCACTCAGCTCATATTTACAGAGTTCT-GGTGTGTGCCATAGAC-ATTCAAAGTGC-CAGAGACAACAG-TAACTATGGCAAGATTTCCAGCTTTTAGGGATGCGCTCAGTTGTGATGTCAGGAAGAGAC--ATATAAACAGATC
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            16397 186 -     45298 ----------------TGGACCCATGCTGGGTGGGAGAGGACAGTGTGGTGGTAGGAGGCATGG--AGCAGGGACAAAACCAGACATGCAGTCACCCA---TGTGTTTATCAGGCACCACACACAT-----------TTCTATGTGCTTAAGGACGATGG--------AGCAGGATTCCTGACCTTCCAGGAAGCGCCCAGTGGGG----------GAAAGACAGGTGAAGGGAGC
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               316226 1326 + 123392446 I
e canFam3.chr35            26308501 3100 +  26524999 I

a score=1077237.000000
s hg38.chr6_GL000254v2_alt  1441426 108 +   4827813 gtcttga-ttgtggagattagtg---cagtgatcaaagtatgccctggggac------tgctatgtgcttatagatgtggtgc--c--taaaccagtgtcggagaggagtgggggatcaaga
s panTro5.chr6             30310788 108 + 175400573 gtcttga-ttgtggagattagtg---cagtgatcaaggtatgccctggggac------tgctatgtgcttatagaggtggtgc--c--taaaccagtgtcggagaggagtgggggatcaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30545278 108 + 173848474 gtcttga-ttgtggagattagtg---cagtgatcaaggtatgccctggggac------tgctatgtgcttatagaggtggtgc--c--taaaccagtgtcggagaggagtgggggatcaaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     252225 107 +   2037526 gtcttga-ttgtggagattagtg---cagtgatcaaggtatgccctggggac------tgctatgtgcttatagaggtggtgc--c--taaaccagtgtcagagaggagt-ggggatcaaga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74919291 108 + 122973662 atctgga-ttgtggagattagtg---cagtgatcaaggtatgccctggggac------tgctatgtgcttatagaggtggcgc--c--taaactagtgtgggagaggagtgggggatcaaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30798600 109 + 172585720 atcttgatttgtggagattagtg---cagtgatcaagctatgccctggggac------tgctatgtgctcatagtggtggtgc--c--taaactagtgtcggagacaatggggggatcaaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30088117 109 - 170955103 atcttgatttgtggagattagtg---cagtgatcaagctaagccctggggac------tgctgtgtgctcatagtggtggtgc--c--taaactagtgtcggagacaatggggggatcaaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     337429 109 +   1495729 atcttgatttgtggagattagtg---cagtgatcaagctatgccctggggac------tgctatgtgctcatagtggtggtgc--c--taaactagtgtcggagacaatggggggatcaaga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     435297 109 -    863181 atcttgatttgtggagattagtg---cagtgatcaagctatgccctggggac------tgctatgtgctcatagtggtggtgc--c--taaactagtgtcagagacaatggggggatcaaga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29587405 109 -  71996105 atcttgatttgtggagattaatg---cagtgatcaagctatgccctggggac------tgctatgtgctcatagtggtggtgc--c--taaactagtgtcggagacaatggggggatcaaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     279382 109 -    735854 atcttgatttgtggagattaatg---cagtgatcaagctataccctggggac------tgctatgtgctcatagtggtggtgc--c--taaactagtgtcggagacaatggggggatcaaga
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     225429 108 -   1829203 atcttgatttgtggagattagtg---cagtgatcaagctatgccctggggac------tgctatgtgctcatagt-gtggtgc--c--taaactagtgtcggagagaatggggggatcaaga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30397760 108 + 171630274 atcttgagttgtggagattggtg---cagtgattaaggtgtgccctggggac------tgctatgtgctcacagaggaggtgc--c--taaactagtgtcagagagga-ggacggatcaaga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           221772 104 +    515838 atcttgagttgtggagattggtg---cagtgattaaggtgtgccctggggac------tgctatgtgctcatagaggaggtgc--c--taaactagtgtcagagagga-----ggatcaaga
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     853017 108 -   1771730 atcttgagttgtggcgattggtg---cagtgattaaggtgttccctggggac------tgctgtgtgcccatagaggaggtgc--c--taaactagtgtcagagagga-ggagggatcaaga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     338788 108 -    383796 atcttgagttgtggagattggtg---cagtgattaaggtgttccctggggac------tgctatgtgctcatagaggaggtgc--c--taaactagtgtcagagagga-ggagggatcaaga
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           270151 108 +  18854210 --------ttgtgaaggtaagtg---caatgacagaggcatg-cctggggactttacatgctgtgttctcctagaggaggtgc--acgtaaactagtgtgggagaggagggaggTGCCAGAG
i otoGar3.GL873550         C 0 I 382
s mm10.chr17               58061034 101 -  94987271 ATTGTTGTTTGTGGGCATATGTGTTACTGTG------------CCTGGACGC------T-CTCTCTTCTCACCCAGGAGGCTCATC--TAAAGACCTGTGGGAAAGGAGGTGGGACTCAGGA
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            16583 106 -     45298 TTTACGGTGTATGGAGAGGCCTG---GAGAGGCGGAGGCCTGCGCTGGGG-C------TGCCCTGTGCTCGCAG--GAGGTGC--C-GTCGACCACCAT-GGAGGGGAGCGGGGGTCCAGGA
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               316226 1326 + 123392446 I
e proCoq1.NW_012149775v1     121646 338 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I

a score=2195837.000000
s hg38.chr6_GL000254v2_alt  1441534 218 +   4827813 aaggctttcagggaagg-----------------------------------------------------aggcgtttgaggcc-----------------------------------ctggaaggctgaggacaagctaagaaga--------------aggaacaatgaaagagggtcagggagat-gtaaacagtgtgGTGAGTGGGGAATTTTAGGCAATTTGGCCTTTCTGGAGTGAAA----AATGGGAAGCAGGTGGGGGCAGGGGT-TAGGCTGAAGGCAGGCCAACGT-------GCAGTTCAGGCTTTATCCTTTAGAGAAG
s panTro5.chr6             30310896 218 + 175400573 aaggctttcagggaagg-----------------------------------------------------aggcgtttgaggcc-----------------------------------ttggaaggctgaggacaagctaagaaga--------------aggaacaatgaaagcgggtcagggagat-gtaaacaatgtgGTAAGTGGGGAATTTTAGGCAATTTGGCCTTTCTAGAGTGAAA----AATGGGAAGCAGGTAGGGGCAGGGGT-TAGGCTGAAGGCAGGCCAACGT-------GGAGTTCAGGCTTTATCCTTTAGAGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30545386 218 + 173848474 aaggctttcagggaagg-----------------------------------------------------aggcgtttgaggcc-----------------------------------ttggaaggctgaggacaagctaagaaga--------------aggaacaatgaaagcgggtcagggagat-gtaaacaatgtggaaagTGGGGAATTTTAGGCAATTTGGCCTTTCTAGAGTGAAA----AATGGGAAGCAGGTAGGGGCAGGGGT-TAGGCTGAAGGCAGGCCAACGT-------GGAGTTCAGGCTTTATCCTTTAGAGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     252332 218 +   2037526 aaggctttcagggaagg-----------------------------------------------------aggcgtttgaggcc-----------------------------------ctggaaggctgaggacaagctaagagga--------------aggaacaatgaaatcgggcccaggagat-gtaaacagtgtgGTAAGTGGGGAATTTTAGGCAATTTGGCCTTTCTGGAGTGAAA----AATGGGAAGCAGGTGGGGGCAGGGGT-TAGGCTGAAGGCAGGCCAACGT-------GGAGTTCAGGCTTTATCCTTTAGAGAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74919399 218 + 122973662 aaggctttcagggaagg-----------------------------------------------------aggcatttgaggcc-----------------------------------ctggaaggctgagggcaagctaagaaga--------------aggaacaatgaaagcgggtcagggagat-gtaaacagtgtgGTGAGTGGGGAATTTTAGGCAATTTGGCCTTTCTAGAGTGAAA----AATGGGAAGCAGGTGGGGGCAGGCGT-TAGGCTGAAGGCATGCCAACGT-------GGAGTTCAGGCTTTATCCTTTAGAGAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30798709 218 + 172585720 aaggctttcagggaagg-----------------------------------------------------aggcatttgaggcc-----------------------------------ctggaaggctgaagacaagctaagaaaa--------------acgaacaatgaaagcggatcagggagat-gtaaacagtgtgGTGAGTGGGGAATTTTAGGCAATTTGAGCTTTTTAGAGTGAAA----AATGGGAAGCAGGTCGGGGCAGGGGT-TAGGCTGAAGGCATGCCAACGT-------GGAGTTCAAGCTTTATCCTTTAGAGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30088226 218 - 170955103 aaggctttcagggaagg-----------------------------------------------------aggcatttgaggcc-----------------------------------ctggaaggctgaagacaagctaagaaaa--------------aggaacaatgaaagcggatcagggagat-gtaaacagtgtgGTGAGTGGGGAATTTTAGGCAATTTGAGCTTTTTAGAGTGAAA----AATGGGAAGCAGGTCGGGGCAGGGGT-TAGGCTGAAGGCATGCCAATGT-------GGAGTTCAAGCTTTATCCTTTAGAGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     337538 218 +   1495729 aaggctttcagggaagg-----------------------------------------------------aggcatttgaggcc-----------------------------------ctggaaggctgaagacaagctaagaaaa--------------acgaacaatgaaagcggatcagggagat-gtaaacagtgtgGTGAGTGGGGAATTTTAGGCAATTTGAGCTTTTTAGAGTGAAA----AATGGGAAGCAGGTCGGGGCAGGGGT-TAGGCTGAAGGCATGCCAATGT-------GGAGTTCAAGCTTTATCCTTTAGAGAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     435406 218 -    863181 aaggctttcagggaagg-----------------------------------------------------aggcatttgaggcc-----------------------------------ctggaaggctaaagacaagctaagaaaa--------------acgaacaatgaaagtggatcagggagat-gtaaacagtgtgGTGAGTGGGGACTTTTAGGCAATTTGAGCTTTCCAGAGTGAAA----AATGGGAAGCAGGTCGGGGCAGGGGT-TAGGCTGAAGGCATGCCAACGT-------GGAGTTCAGGCTTTATCCTTTAGAGAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29587514 218 -  71996105 aaggctttcagggaagg-----------------------------------------------------aggcatttgaggcc-----------------------------------ctggaaggctgaagacaagctaagaaaa--------------acgaacaatgaaagcggatcagggagat-gtaaacagtgtgGTGAGTGGGGAATTTTAGGCAATTTGAGCTTTTTAGAGTGAAA----AATGGGAAGCAGGTCGGGGCAGGGGT-TAGGCTGAAGGCATGCCAACGT-------GGAGTTCAGGCTTTATCCTTTAGAGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     279491 218 -    735854 aaggctttcagggaagg-----------------------------------------------------aggcatttgaggcc-----------------------------------ctggaaggctgaagacaagctaagaaaa--------------acgaacaatgaaagtggatcagggagat-gtaaacagtgtgGTGAGTGGGGACTTTTAGGCAATTTGAGCTTTCTAGAGTGAAA----AATGGGAAGCAGTTCGGGGCAGGGGT-TAGGCTGAAGGCATGCCAACGT-------GGAGTTCAGGCTTTATCCTTTAGAGAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     225537 218 -   1829203 aaagctttcagggaagg-----------------------------------------------------aggcatttgaggcc-----------------------------------ctggaaggctgaagacaagctaagaaaa--------------aggaacaatgaaagcggatcagggagat-gtaaacaatgtgGTGAGTGGCGAATTTTAGGCAATTTGGGCTTTTTAGAGTGAAA----AATGGGAAGCAGGTCAGGGCAGGGGT-TAGGCTGAAGGCATGCCAACGT-------GGAGTTCAGGCTTTATCCTTTAGAGAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30397868 218 + 171630274 aaggctttcagggacgg-----------------------------------------------------aggcatttgaggct-----------------------------------ctggaaggctgaggacaagccaagaaga--------------aggaacaatgaaagtgggtcagggagat-gtaaacggtgtgGTGAGTGGGGAATTTTAGGCAATTTGGCCTTTCTAGAGTGAAA----AATGAGAAGCAGGTAGGGGCAAGGGT-TAGGCTGAAGCGATGCCAATGT-------GAAGCTCAGCCTTTATCCTTTAGAGAAG
i calJac3.chr4             C 0 I 13
s saiBol1.JH378341           221876 218 +    515838 aaggctttcaggaacgg-----------------------------------------------------aggtatttgaggcc-----------------------------------ctggaaggctgaggacaagctaagaaga--------------aggaacaatgaaagcgggtcagggagat-gtaaacggtgtgGTGAGTGGGGAATTTTAGGCAATTTGGCCTTTCTAGAGTGAAA----AATGGGAAGCAGGTAGGGGTAAGGGT-TAGGCTGAAGGCACGCCAATGT-------GGAGTTCAGGTTTTATCCTTTAGAGAAG
i saiBol1.JH378341         C 0 I 18
s cebCap1.NW_016107755v1     853125 218 -   1771730 aaggctttcagtgacgg-----------------------------------------------------aggcgtttgaggcc-----------------------------------ctggaaggctgaggacaagtgaagaaga--------------aggaacaatgaaagtgggtcagggagat-gtaaacagtgtgGTGAGTGGGGAATTTTAGGCAATTTGGCCTTTCTAGAGTGAAA----AATGGGAAACAGTTAGGGGCAAGGGT-TACACTGAAGGCACGCCAATGT-------GGAGCTCAGGCTTCATCCTTTAGAGAAT
i cebCap1.NW_016107755v1   C 0 I 25
s aotNan1.NW_018496904v1     338896 214 -    383796 aaggctttcagggacgg-----------------------------------------------------agccgtttgaggcc-----------------------------------ctggaaggctgaggacaagctaagaaga--------------aggaaCAATGAAAGCGGGTCAGGGATAT-GTTAACGGTGTGGTTAGTGGGGAATTTTAGGCAATTTGGCCTTTCTAGAGTGAAA----AATGGGAAGCAGGTAGGGGCAAGGGT-TAGGCTAAAG----GCCAATGT-------GGAGTTCAGGCTTTATCCTTTAGAGAAG
i aotNan1.NW_018496904v1   C 0 I 4211
s mm10.chr17               58061135 321 -  94987271 AGAGCTCTCTGAGGAGGAAGAAGAAATAGGATGccaggtgtgataaagcacactcgtactctcatcattcaggagttggaggctggagaatcaggagttcaagactagcctcagctacactgtaaagctgaggcctggctttataaaattctgcctcagaCACATACAACAAAACAGTAGTAGAAGGA----ACACAAGCAGGTCA---AGGGATATTAGACATTTAGTGCTGTAGAGAAGGAGC----GTTTGGTGCGGTGCAAAATGAGTGAT-TAGGTTGGAGACACTTAAAATCCTTAATAGGTACCTAGACCTTATTTTTTAGAGAAA
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            16689 192 -     45298 -AGGCCTCTGGGGGAGG-------------------------------------------------------GTAGTCAAGGCC-----------------------------------TCGG--GGCTGGGGACCAGCTCAGGAGA--------------GGGGGCAGTG-GAGCAGGCGAGGGAGCTGGGGAGCAGCGC-GCGAGCAGGGGCTTTCAG-CAGCTGGGTCGCTCTCTCGTAAAGCCCCGACAAGCAGGAAGCAGGGGCGGAGGCATCGGCAGAGGGGTCAC-----T-------GGACTGCGG-------------------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               316226 1326 + 123392446 I
e proCoq1.NW_012149775v1     121646 338 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e otoGar3.GL873550           270259 382 +  18854210 I

a score=89954.000000
s hg38.chr6_GL000254v2_alt  1441752 12 +   4827813 GGA--GGCATTATT
s panTro5.chr6             30311114 12 + 175400573 GGA--GGCATTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30545604 12 + 173848474 GGA--GGCATTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     252550 12 +   2037526 GGA--GGCATTATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74919617 12 + 122973662 GGG--GGTGTTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30798927 12 + 172585720 GGG--GGCATTACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30088444 12 - 170955103 GGG--GGCATTACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     337756 12 +   1495729 GGG--GGCATTACT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     435624 12 -    863181 GGG--GGCATCACT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29587732 12 -  71996105 GGA--GGCATTACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     279709 12 -    735854 GGG--GGCATTACT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     225755 12 -   1829203 GGG--GGCATTACT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30398099 12 + 171630274 GGT--GGCATTATT
i calJac3.chr4             I 13 C 0
s saiBol1.JH378341           222112 14 +    515838 GGTCAGGCATTATT
i saiBol1.JH378341         I 18 C 0
s cebCap1.NW_016107755v1     853368 13 -   1771730 GGC-GGGCATTATT
i cebCap1.NW_016107755v1   I 25 C 0
s mm10.chr17               58061456 12 -  94987271 GGA--GATGTTATC
i mm10.chr17               C 0 C 0
e micMur3.chr6               316226 1326 + 123392446 I
e dasNov3.JH580105            16881  0 -     45298 C
e proCoq1.NW_012149775v1     121646 338 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e otoGar3.GL873550           270259 382 +  18854210 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I

a score=480695.000000
s hg38.chr6_GL000254v2_alt  1441764 44 +   4827813 GAAAGTCCAACAAGTTCTAACATGACCAGATTATATTTTTAGAA
s panTro5.chr6             30311126 44 + 175400573 GAAAGTCCAACAAGTTCTAACATGACCAGATTATATTTTTAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30545616 44 + 173848474 GAAAGTCCAACAAGTTCTAACATGACCAGATTATATTTTTAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     252562 44 +   2037526 GAAAGTCCAACAAGTTCTAACATGACCAGATTATATTTTTAGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74919629 44 + 122973662 GAAAGTCCATCAAGTTCTAACATGACCAGATTATATTTTTAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30798939 44 + 172585720 GAAAGTCCAACAAGTTCTAACATGACCAGATTATATTTTTAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30088456 44 - 170955103 GAAAGTCCAACAAGTTCTAACATGACCAGATTATATTTTTAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     337768 44 +   1495729 GAAAGTCCAACAAGTTCTAACATGACCAGATTATATTTTTAGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     435636 44 -    863181 GAAAGTCCAACAAGTTCTAACATGACCAGATTATATTTTTAGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29587744 44 -  71996105 GAAAGTCCAACAAGTTCTAACATGACCAGATTATATTTTTAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     279721 44 -    735854 GAAAGTCCAACAAGTTCTAACATGACCAGATTATATTTTTAGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     225767 44 -   1829203 GAAAGTCTAACAAGTTCTAACATGACCAGATTATATTTTTAGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30398111 44 + 171630274 GAAAGTCCAAAAAGTCCTAACATGACCAGattatatttttaaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           222126 44 +    515838 GAAAGTCCAAAAAGTCCTAACATGACCAGATTATATTTTAAAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     853381 44 -   1771730 GAAAGTCCAAAAAGTCCTAACATGACCAGATTATATTTTTAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           270641 43 +  18854210 GAAAGTCTGGCAAGTCCTGACATGATCAGATTATATTTCAAAA-
i otoGar3.GL873550         I 382 C 0
s mm10.chr17               58061468 44 -  94987271 ACAATCCCAGGGAATCCTGACATGATCACATTAGATTATAAGAA
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            16881 32 -     45298 -----------AAGCCCTGACA-GGCCGGATCGCGCTTTAGGAA
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               316226 1326 + 123392446 I
e proCoq1.NW_012149775v1     121646 338 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I

a score=432758.000000
s hg38.chr6_GL000254v2_alt  1441808 43 +   4827813 ATCATTTGAatatctgcaacttactttaaaatgcataaaatta
s panTro5.chr6             30311170 43 + 175400573 ATCATTTGAatatctgcaacttactttaaaatgcataaaatta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30545660 43 + 173848474 ATCATTTGAatatctgcaacttactttaaaatgcataaaatta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     252606 43 +   2037526 ATCATTTGAatatctgcaacttactttaaaatgcataaaatta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74919673 43 + 122973662 ATCATTTGAatatctgcaacttactttaaaatgcataaaatta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30798983 43 + 172585720 ATCATTTGAatatctgcagcttactttaaaatacaaaaaatta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30088500 43 - 170955103 ATCATTTGAatatctgcagcttactttaaaatacaaaaaatta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     337812 43 +   1495729 ATCATTTGAatatctgcagcttactttaaaatacaaaaaatta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     435680 42 -    863181 ATCATTTGAatacctgcagcttactttaaaatac-aaaaatta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29587788 42 -  71996105 ATCATTTGAatatctgcagcttactttaaaatac-aaaaatta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     279765 42 -    735854 ATCATTTGAatatctgcagcttactttaaaatac-aaaaatta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     225811 43 -   1829203 ATCATTTGAatatctgcagcttactttaaaatacaaaaactta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30398155 43 + 171630274 attatttGAatatctgcaacttactttaagatgcataaaatta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           222170 43 +    515838 ATCATTTGAatatctacaacttactttaaaatgcatacaatta
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     853425 43 -   1771730 ATCATTTGAatatctacaacttactttaaaatgcatacaatta
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     121984 43 -   1411461 ATCATTTGAatgtatgcaacttactttaaaatgcataaaatta
i proCoq1.NW_012149775v1   I 338 C 0
s otoGar3.GL873550           270684 43 +  18854210 ATCATTTTCatgtatgtaacttactttaaaatgcataaaattg
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58061512 38 -  94987271 -ATATTTTATTCTTTATAATCTCTTT----ACACATATAGTTA
i mm10.chr17               C 0 I 3212
s dasNov3.JH580105            16913 21 -     45298 -GAACCTGAGCGCACGGAGCTC---------------------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               316226 1326 + 123392446 I
e canFam3.chr35            26308501 3100 +  26524999 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I

a score=610265.000000
s hg38.chr6_GL000254v2_alt  1441851 56 +   4827813 taagatggatagaaggatgaaggaatgggtcgatggaaacatatttgataaagcaa
s panTro5.chr6             30311213 56 + 175400573 taagatggatagaaggatgaaggaatgggtcgatggaaacatatttgataaagcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30545703 56 + 173848474 taagatggatagaaggatgaaggaatgggtcgatggaaacatatttgataaagcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     252649 56 +   2037526 taagatggatagaaggatgaaggaatgggtcgatggaaacatatttgataaagcaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74919716 56 + 122973662 taagatggatagaaggatgaaggaatggatcaatggaaacatatttgataaagcaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30799026 56 + 172585720 taagatgaatagaaggatgaaggaatggatcaatggaaacatatttgataaagcaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30088543 56 - 170955103 taagatgaatagaaggatgaaggaatggatcaatggaaacatatttgataaagcaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     337855 56 +   1495729 taagatgaatagaaggatgaaggaatggatcaatggaaacatatttgataaagcaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     435722 54 -    863181 taagatgaatagaaggatgaaggaatggatcaatggaaac--atttgataaagcaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29587830 56 -  71996105 taagatgaatagaaggatgaaggaatggatcaatggaaacatatttgataaagcaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     279807 56 -    735854 taagatgaatagaaggatgaaggaatggatcaatggaaacatatttgataaagcaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     225854 56 -   1829203 taagatgaatagaaggatgaaggaatggatcaatggaaacatatttgataaagcaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30398198 56 + 171630274 taagatggatagatggatgaaggaatggatcaatggaaatatatttgataaagcaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           222213 56 +    515838 taaggtggatagatggatgaaggaatggatcaatggaaacatatttgataacgcaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     853468 56 -   1771730 taagatggatagatggatgaaggaatggatcaatggaaacatatttgataaagcaa
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     122027 54 -   1411461 taagatggctggagggatgaagggatggatagatgg-aa-acatttgatacagcaa
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           270727 55 +  18854210 taagatgggtagatggatgaagggatggataggtggaaa-atatttgataaagcaa
i otoGar3.GL873550         C 0 I 779
s dasNov3.JH580105            16934 39 -     45298 TAAGGCGCAGGGATGCCGGGTGGGACG-----------------CTGAGCAAGCAG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               316226 1326 + 123392446 I
e mm10.chr17               58061550 3212 -  94987271 I
e canFam3.chr35            26308501 3100 +  26524999 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I

a score=230460.000000
s hg38.chr6_GL000254v2_alt  1441907 27 +   4827813 gtacagtaaaatgctaatgagaaaatg
s panTro5.chr6             30311269 27 + 175400573 gtacagtaaaatgctaatgggaaaatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30545759 27 + 173848474 gtacagtacaatgctaatgggaaaatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     252705 27 +   2037526 gtacagtaaaatgctaatgagaaaatg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74919772 27 + 122973662 gtacagtaaaatgctaatgataaaatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30799082 27 + 172585720 gtatagtaaaatgctaatgttaaaatc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30088599 27 - 170955103 atatagtaaaatgctaatgataaaatc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     337911 27 +   1495729 gtatagtaaaatgctaatgataaaatc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     435776 27 -    863181 gtatagtaaaatgctaatgataaaatc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29587886 27 -  71996105 gtatagtaaaatgctaatgataaaatc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     279863 27 -    735854 gtatagtaaaatgctaatgataaaatc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     225910 27 -   1829203 gtatagtaaaatgctaatgataaaatc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30398254 27 + 171630274 gtatagtaaaatgccaacgataaaatc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           222269 27 +    515838 gtagagtaaaatgctaatgataaaatc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     853524 27 -   1771730 gtagagtaaaatgctgatgacaaaatc
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     122081 25 -   1411461 gtatagtaaaatgcttat--ttaaatc
i proCoq1.NW_012149775v1   C 0 C 0
s dasNov3.JH580105            16973 27 -     45298 CTTCAGCAGCGTCTTGGTGGGCGACCC
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               316226 1326 + 123392446 I
e mm10.chr17               58061550 3212 -  94987271 I
e canFam3.chr35            26308501 3100 +  26524999 I
e otoGar3.GL873550           270782 779 +  18854210 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I

a score=283536.000000
s hg38.chr6_GL000254v2_alt  1441934 28 +   4827813 taggtggta-atatttggatggtcactgt
s panTro5.chr6             30311296 28 + 175400573 taggtggta-atatttggatggtcactgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30545786 28 + 173848474 taggtggta-atatttggatggtcactgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     252732 28 +   2037526 taggtggta-atatttggatggtcactgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74919799 28 + 122973662 taggtggtg-gtatttggagggtaactgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30799109 28 + 172585720 taggtggtg-gtatttggatggtcactgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30088626 28 - 170955103 taggtggtg-gtatttggatggtcactgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     337938 28 +   1495729 taggtggtg-gtatttggatggtcactgt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     435803 28 -    863181 taggtggtg-gtatttggatggtcactgt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29587913 28 -  71996105 taggtggta-gtatttggatggtcactgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     279890 28 -    735854 taggtggtg-gtatttggatggtcactgt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     225937 28 -   1829203 taggtggtg-gtatttggatggtcactgt
i colAng1.NW_012115577v1   C 0 I 326
s calJac3.chr4             30398281 29 + 171630274 taggtggtgggtatttggatggtcactgt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           222296 29 +    515838 taggtgttgagtatttggatggtcactgt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     853551 29 -   1771730 taggtggtgggtatttggatggtcactgt
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     122106 26 -   1411461 taagtggtgggtattta---ggtcactgt
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           271561 28 +  18854210 taagtggtgggtattagg-tggtcactgt
i otoGar3.GL873550         I 779 C 0
s dasNov3.JH580105            17000 22 -     45298 ---GAggtg-ggct---gggggccactgc
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               316226 1326 + 123392446 I
e mm10.chr17               58061550 3212 -  94987271 I
e canFam3.chr35            26308501 3100 +  26524999 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I

a score=1437437.000000
s hg38.chr6_GL000254v2_alt  1441962 135 +   4827813 aaaattcattcaactctt----ctg---tcagaagattttcaaaataaaattttagaaaaGCATAGACTTTGGCCTGGGTAATGGAAGATGGATTGGGCAGAATAAGTCTGGAGGCAGGGAAATGAGAAAGGCAGCTGTCAT
s panTro5.chr6             30311324 135 + 175400573 aaaattcattcaactctt----ctg---tcagaagattttcaaaataaaattttagaaaaGCATAGACTTTGGCCTGGGTAATGGAGGATGGATTGGGCAGAATAAGTCTGGAGGCAGGGAAATGAGAAAGGCAGCTGTCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30545814 135 + 173848474 aaaattcattcaactctt----ctg---tcagaagattttcaaaataaaattttagaaaaGCATAGACTTTGGCCTGGGTAATGGAGGATGGATTGGGCAGAATAAGTCTGGAGGCAGGGAAATGAGAAAGGCAGCTGTCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     252760 135 +   2037526 aaaattcattcaactctt----ctg---tcagaaaattttcaaaataaaattttagaaaaGCATAGACTTTGGCCTGGGTAATGGAAGATGGATTGGGCAGAATAAGTCTGGAGGCAGGGAACTGAGAAAGGCAGCTGTCAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74919827 135 + 122973662 aaaattcattcaactctt----ctg---tcagaagattttcaaaataaaattttagagaaGCATAGACTTTGGCCTGGGTAATGGAAGATGGATTGGGCAGAATAAGTCTGGGGGCAGGGAGATGAGAAAGGCAGCTGTCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30799137 135 + 172585720 aaaattcattcaactctt----ctg---tcagaagattttcaaaataaaattttagaaaaGCATAGACTTTGGCCTGGGTAATGGAAGATGGATTGGGCAGAATAAGTCTGGAGGCAGGGAGATGAGAAAGGCAGCTGTTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30088654 135 - 170955103 aaaattcattcaactctt----ctg---tcagaagattttcaaaataaaattttagaaaaacaTAGACTTTGGCCTGGGTAATGGAAGATGGATTGGGCAGAATAAGTCTGGAGGCAGGGAGATGAGAAAGGCAACTGTCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     337966 135 +   1495729 aaaattcattcaactctt----ctg---tcagaagattttcaaaataaaattttagaaaaGCATAGACTTTGGCCTGGGTAATGGAAGACGGATTGGGCAGAATAAGTCTGGAGGCAGGGAGATGAGAAAGGCAGCTGTCAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     435831 135 -    863181 aaaattcattcaactctt----ctg---tcagaagattttcaaaataaaattttagaaaaGCATAGACTTTGGCCTGGGTAATGGAAGATGGATTGGGCAGAATAAGTCTGGAGGCGGGGAGATGAGAAAGTCAGCTGTTAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29587941 135 -  71996105 aaaattcattcaactctt----ctg---tcagaagattttcaaaataaaattttaaaaaaGCATAGACTTTGGCCTGGGTAATGGAAGATGGATTGGGCAGAATAAGTCTGGAAGCAGGGAGATGAGAAAGGCAACTGTCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     279918 135 -    735854 aaaattcattcaactctt----ctg---tcagaagattttcaaaataaaattttagaaaaGCATAGACTTTGGCCTGGGTAATGGAAGATGGATTGGGCAGAATAAGTCCGGAGGCGGGGAGATGAGAAAGTCAGCTGTTAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     226291 135 -   1829203 aaaattcattcaactctt----ctg---tcagaagattttcaaaataaaattttagaaaaGCATGGACTTTGGCCTGGGTAATGGAAGATGGATTGGGCAGAATAAGTCTGGAGGCAGGGAGATGAGAAAGGCAGTTGTCAT
i colAng1.NW_012115577v1   I 326 C 0
s calJac3.chr4             30398310 133 + 171630274 aaaattcattcaa-tctt----ctg---tcagagaattttcaaaataaaattttaggaaaGCATAGACTTTGGCCCGGGTCATGGAAGATAGATTGGGCAGAATAAGTTCGGAGGCCGGGAGATGAGAAAGGCA-TTGTCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           222325 133 +    515838 aaaattaattcaa-tcat----ctg---tcagaggattttcaaaataaaattttagaaaaGCATAGACTTTGGCCCGGGTAATGGAAGATGGATTGGGCAGAATAAGTCCAGAGGCAGGGAGATGAGAAAGGCA-TTGTCAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     853580 133 -   1771730 aaaattcattcaa-tctt----ctg---tcagaggattttcaatataaaattttagaaaaGCATAGACTTTGGCCTGGGTAATGGGAGGTGGATTGGGCCGAATAAGTCCGGAGGCAGGGAGATGAGAAAGGCA-TTGTCAT
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     122132 137 -   1411461 aaaattttttcaactcttccatctg---ttgaaaggttttcataataacattttaggaaaaAATGA--TTTTGCGGGGGTCATGGAGGTTGGATTGGGCAAGATAAGTCTGAAGGCAGGGAGATGAGGGAGGCAGCCGTCAT
i proCoq1.NW_012149775v1   C 0 I 197
s otoGar3.GL873550           271589 122 +  18854210 aaaattctttcaacttgt--atctg---ttggaaggttttcataataaaactttgg---------------TATGGAGGTCATAgagaatagattggacaaggtaagtctggaggtagagagatgggggagacagctatcat
i otoGar3.GL873550         C 0 I 3
s dasNov3.JH580105            17022 119 -     45298 aaaactc---cagctctt----ctgtattttgaaacttcgcatgataaagttttgggGGTGAAGTGACTTTGGGCTGGTTCATGGAGGATGGGTTGGG--GGATAATTCTAGAAACAG----ATCAGGGGGT----------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               316226 1326 + 123392446 I
e mm10.chr17               58061550 3212 -  94987271 I
e canFam3.chr35            26308501 3100 +  26524999 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I

a score=737544.000000
s hg38.chr6_GL000254v2_alt  1442097 77 +   4827813 AATCCAGGTGAGGGCTGATCTAGACAGTGCTAG--GAGGAAGATGGGTGGAGTCCTGTGGTAGGCGCTAACATCAAGGA
s panTro5.chr6             30311459 77 + 175400573 AATCCAGGTGAGGGCTGATCTAGACAGTGCTAG--GAGGAAGATGGGTGGAGTCCTGTGGTAGGCGCTAACATCAGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30545949 77 + 173848474 AATCCAGGTGAGGGCTGATCTAGACAGTGCTAG--GAGGAAGATGGGTGGAGTCCTGTGGTAGGCGCTAACATCAGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     252895 77 +   2037526 AATCCAGGTGAGGGCTGATCTAGACAGTGCTAG--GAGGAAGATGGGTGGAGTCCTGTGGTAGGCGCTAACATCAAGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74919962 77 + 122973662 AATCCAAGTGAGGGCTGATCTAGACAGTGCTAG--GAGGAAGGTGGGTGGAGTCCTGTGGTGGGCGCTAACATCAAGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30799272 77 + 172585720 AATCCAGTTGAGGGCTGATCTAGACAGTGCTAG--GAGGAAGGTGGGTGGAGTCCTGTGGTAGGCGCTAACATCAAGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30088789 77 - 170955103 AATCCAGGTGAGGGCTGATCTAGACAGTGCTAG--GAGGAAGGTGGGTGGAGTCCTGTGGTAGGCGCTAACATCAAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     338101 77 +   1495729 AATCCAGGTGAGGGCTGATCTAGACAGTGCTAG--GAGGAAGGTGGGTGGAGTCCTGTGGTAGGCGCTAACATCAAGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     435966 77 -    863181 AATCCAGTTGAGGGCTGATCTAGACAGTGCTAG--GAGGAAGGTGGGTGGAGTCCTGTGGTAGGCGCTAACATCAAGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29588076 77 -  71996105 AATCCAGGTGAGGGCTGATCTAGACAGTGCTAG--GAGGAAGGTGGGTGGAGTCCTGTGGTAGGCGCTAACATCAAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     280053 77 -    735854 AATCCAGTTGAGGGCTGATCTAGACAGTGCTAG--GAGGAAGGTGGGTGGAGTCCCGTGGTAGGCGCTAACATCAAGGA
i manLeu1.NW_012107142v1   C 0 M 958
s colAng1.NW_012115577v1     226426 77 -   1829203 AATCCAGGTGAGGGCTGATCTAGACAGTGCTAG--GAGGAAGGTGGGTGGAGTCCTGTGGTAGGCGCTAACATCAAGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30398443 77 + 171630274 AATTCAGGTGAGGGCTGATCTAGACAGTGCTGG--GAGGAAGGTTGGTGGAGTCCTGCGGTAGGTGCTAACATCAAAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           222458 76 +    515838 AATCCAGGTGAGGGCCGATCTAGACAGTGC-GG--GAGGAAGGTGGGTGGAGTCCTGCAGTAGGTGCTAACATCAAAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     853713 76 -   1771730 AATCCAGGTGAGGGCTGATCTAGACAGTGC-GG--GAGGAAGGTGGGTGGAGTCCTGTGGTAGGTGCTAACATCAAAGA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           271714 74 +  18854210 aatctga--aagagccagt---ggcagtaagggtagagaaaagtggatggattcctggggtaagagttaacatggacaa
i otoGar3.GL873550         I 3 C 0
s dasNov3.JH580105            17141 61 -     45298 GGCCCCGGT--GGTCTGGCCTGGGCAGAGGAGG--AAGGGGGAGAGGGCGGGGTCTGAGGGAGGA--------------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               316226 1326 + 123392446 I
e mm10.chr17               58061550 3212 -  94987271 I
e proCoq1.NW_012149775v1     122269 197 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I

a score=724379.000000
s hg38.chr6_GL000254v2_alt  1442174 91 +   4827813 GGTTG-------GGGCCTCAAGGACTGTAAGAATGAGGAAGAAGAAAGAGTTGAAGATAACACCTAGGTTGGGTGACTGTGTGGGGGTTGGTAGCAAC
s panTro5.chr6             30311536 90 + 175400573 GGTTG-------GGGCCTCAAGGACTGTAAGAATGAGGAAGAAGAAAGAGTTGAGGATAACACCTAGGTTGGGTGACTGTGTGGGG-CTGGTAGCAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30546026 90 + 173848474 GGTTG-------GGGCCTCAAGGACTGTAAGAATGAGGAAGAAGAAAGAGTTGAGGATAACACCTAGGTTGGGTGACTGTGTGGGG-CTGGTAGCAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     252972 90 +   2037526 GGTTG-------GGGCCTCAAGGACTGTAAGAATGAGGAAGAAGAAAGAGTTGAGGATAACACCTAGGTTGGGTGACTGTGTGGGG-TTGGTAGCAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74920039 91 + 122973662 GGTTG-------CGGCCTCAAGGACTGTAAGAATGAGGAAGAAGAAAGAGTTGAGGATAACACCTAGGTTGGGTGACTGGGTGGGGGTTGGTAGCAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30799349 90 + 172585720 GGTTG-------GGGCCTCAAGGACTGTGAGAATGAGGAAG-AGAAAGAGTTGAGGATAACACCTAGGTTGGGTGACTGGGTGGGGGTTGGTAGCAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30088866 90 - 170955103 GGTTG-------GGGCCTCAAGGACTGTGAGAATGAGGAAG-AGAAAGAGTTGAGGATAACACCTAGGTTGGGTGACTGGGTGGGGGTTGGTAGCAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     338178 90 +   1495729 GGTTG-------GGGCCTCAAGGACTGTGAGAATGAGGAAG-AGAAAGAGTTGAGGATAACACCTAGGTTGGGTGACTGGGTGGGGGTTGGTAGCAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     436043 90 -    863181 GGTTG-------GGGCCTCAAGGACTGCGAGAATGAGGAAG-AGAAAGAGTTGAGGATAACACCTAGGTTGGGTGACTGGGTGGGGGTTGGTAGGAAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29588153 90 -  71996105 GGTTG-------GGGCCTCAAGGACTGTGAGAATGAGGAAG-AGAAAGAGTTGAGGATAACACCTAGGTTGGGTGACTGGGTGGGGGTTGGTAGCAAC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     226503 90 -   1829203 GGTTG-------GGGCCTCAAGGACTGTGAGAATGAGGAAG-AGAAAGAGTTGAGGATAACACCTAGGTTGGGTGACTGGGTGGGGGTTGGTAGCAAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30398520 91 + 171630274 GTTTG-------GGGCCTCAAGGACTGTGAGAATGAGGAAGAAGAAAGAGTTGAGGATAACACCTGGGTTGGGTGACTGGGTGGGCGTTGGTAGCAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           222534 91 +    515838 GTTTG-------GGACCTCAAGGACTGTGAGAATGAGGAAGAAGAAAGAGTTGAGGATAACATCTAGGTTGGGTGACCGGGTGGGTGTTGGTAGCAAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     853789 91 -   1771730 CTTTG-------GGGCCCCAAGGACTGTGAGAATGAGGAAGAAGAAAGAGTTGAGGAGAACACCTAGGTTGGGTGACTGGGTGGGCGTTCATAGCAAC
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           271788 78 +  18854210 ----g-------ggactcgaaggaccttgagagtgagaa---agaaggagttgaggataacatccaGCTGGGGATTCCTTGTGGG------TGGCAAC
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            17202 56 -     45298 GGTTGTGTCCACAGGCCTGGAGGACCCTGAGAGCGA------AGGAGGAGCCGAG-------CCCAGGT-----------------------------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               316226 1326 + 123392446 I
e mm10.chr17               58061550 3212 -  94987271 I
e proCoq1.NW_012149775v1     122269 197 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M

a score=113032.000000
s hg38.chr6_GL000254v2_alt  1442265 15 +   4827813 AATGAGTATAAAACA
s panTro5.chr6             30311626 15 + 175400573 AATGAGTATAAAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30546116 15 + 173848474 AATGAGTATAAAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     253062 15 +   2037526 AGTGAGTATAAAACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74920130 15 + 122973662 AATGAGTAGAAAACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30799439 15 + 172585720 AATGACTCGAAAACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30088956 15 - 170955103 AATGACTCGAAAACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     338268 15 +   1495729 AATGACTCGAAAACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     436133 15 -    863181 AATGACTCGAAAACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29588243 15 -  71996105 AGTGACTCGAAAACA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     226593 15 -   1829203 AATGACTCGAAAACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30398611 15 + 171630274 AATGAGTAGAAAACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           222625 15 +    515838 AATGAGTAGGAAACA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     853880 14 -   1771730 -ATGAGTAGAAAACA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           271866 15 +  18854210 AATGAATAGAGGGCA
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58064762 15 -  94987271 AATGAATTGGGAACA
i mm10.chr17               I 3212 I 1
e micMur3.chr6               316226 1326 + 123392446 I
e dasNov3.JH580105            17258  0 -     45298 C
e proCoq1.NW_012149775v1     122269 197 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M

a score=991061.000000
s hg38.chr6_GL000254v2_alt  1442280 107 +   4827813 GGCAGCAGGATCAGGTCTGGGAAG-GGGGACAAGATGACTTCATGACCCCAGAGTTTCTATAG----GAATATGCTTTGGGAGCTTGCAGA--------------------CCCCTGGCTCCTCAAGGGGGC
s panTro5.chr6             30311641 107 + 175400573 GGCAGCAGGATCAGGTCTGGGAAG-GGGGACAAGATGACTTCATGACCCCAGAGTTTCTGTGG----GAATATGCTTTGGGAGCTTGCAGA--------------------CCCCTGGCTCCTCAAGGGGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30546131 107 + 173848474 GGCAGCAGGATCAGGTCTGGGAAG-GGGGACAAGATGACTTCATGACCCCAGAGTTTCTGTGG----GAATATGCTTTGGGAGCTTGCAGA--------------------CCCCTGGCTCCTCAAGGGGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     253077 107 +   2037526 GGCAGCAGGATCAGGTCTGGGAAG-GGGGACAAGATGACTTCATGACCCCAGAGTTTCTGTGG----GAATATGCTTTGGGAGCTTGCAGA--------------------CCCCTGGCTCCTCAAGGGGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74920145 107 + 122973662 GGCAGCAGGATCAGGTCTGGGGCG-GGGGACAAGATGATTTCATGACCCCAGAGTTTCTGTGG----GAATAAGCTTGGGGAGCTTGCAGA--------------------CCCCTGGCTCCTCAAGGGGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30799454 107 + 172585720 GGCAACAGGAGCAGGTCTGGGAAG-GGGGACAAGATGACTTCATGACCCCAAAGTTTCTGTGG----GACTATGCTTTGGGAGCTCGCAGA--------------------CTCCTGCCTCCCCAAGGGGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30088971 107 - 170955103 GGCAGCAGGAACAGGTCTGGGAAG-GGGGACAAGATGACTTCATGACCCCAAAGTTTCTGTGG----GAATATGCTTTGGGAGCTCGCAGA--------------------CTCCTGCCTCCCCAAGGGGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     338283 107 +   1495729 GGCAGCAGGAACAGGTCTGGGAAG-GGGGACAAGATGACTTCATGACCCCAAAGTTTCTGTGG----GAATATGCTTTGGGAGCTCGCAGA--------------------CTCCTGCCTCCACAAGGGGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     436148 107 -    863181 GGCAGCAGGAACAGGTCTGGGAAG-GGGGACAAGATGACTTCATGACCCCAAAGTTTCTGTGG----GAATATGCTTTGGGAGCTCGCAGA--------------------CTCCTGCCTCCCCAAGGGGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29588258 107 -  71996105 GGCAGCAGGAACAGGTCTGGGAAA-GGGGACAAGATGACTTCATGACCCCAAAGTTTCTGTGG----GAATATGCTTTGGGAGCTCGCAGA--------------------CTCCTGCCTCCCCAAGGGGGC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     226608 107 -   1829203 GGCAGCAGGAACAGTTCTGGGAAG-GGGGACAAGGTGACTTCATGACCCCAGAGTTTCTGTGG----GAATATGCTTTCGGAGCTCACAGA--------------------CTCCTACCTCCCCAAGGGGGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30398626 108 + 171630274 GGCAGCAGGAACAAGTCTGGGAAG--GGGACAAGATGACTTCATGACCTCAGA-TTTCAGTGGGAATGAATATGCTTTGGGAGCTCACAGA--------------------CCCTTGGCTCCTCAA-GGGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           222640 105 +    515838 GGCAGCAGGAACAAGTCTGGGAAG-CGGGACAAGATGACTTCATGACCTCACA-CTTCAGTGG----GAATATGCTTTGCAAGCTCACAGA--------------------CCCCTGGCTCCTCAA-GGGGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     853894 106 -   1771730 GGCAGCAGGAACAAGTCTGGGAAAGGGGGACAAGATGACTTCATGACCTCAAA-TTTCAGTGG----GAATATTCTTTGGGAGCTCACAGA--------------------CACCTGGCTCCTCAA-GGGGC
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     122466 104 -   1411461 GGCAGCAGGAACAGATCTGGGAAG-GGGGACAAGATGACT---TGATCTCAAAGTGTCTATGA----GAACATGCTTTGGGAGCTCGCAGA--------------------CCCCTGGCTCTTCACGGAGGA
i proCoq1.NW_012149775v1   I 197 C 0
s otoGar3.GL873550           271882 122 +  18854210 GGCAACAGGAACAGATCTGAGGAG-CGGGACAAGATGACT---TGATCTCAGACTGTCTGTGA----GA--ATGTTTTGGGGGCTCACAGACTAGCCCCCCCCAAAAAAAGCCCATAGCTTTTCGTGAAGGA
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58064778  90 -  94987271 GGAATCAAGAACAGACCTGGGCAG-GGGAACTAGGTCACTTCA-GGTCTTACAATGTCTGTGG----GAAT----TCTGGG------------------------------CATTGTGTTCCTCATGGAG--
i mm10.chr17               I 1 C 0
s dasNov3.JH580105            17258  82 -     45298 -------------GGTCTGGGGGG------------GACTTGAGGGTCCCA-AGCATCTGTGG----GAAGATGCTTTGGGAGCTCGGAGA--------------------CCCCTGAGTCCTCAAAGGGGC
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               316226 1326 + 123392446 I
e canFam3.chr35            26308501 3100 +  26524999 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M

a score=98714.000000
s hg38.chr6_GL000254v2_alt  1442387 8 +   4827813 CACTCTGG
s panTro5.chr6             30311748 8 + 175400573 CACTCTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30546238 8 + 173848474 CACTCTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     253184 8 +   2037526 CACTCCGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74920252 8 + 122973662 CACTCTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30799561 8 + 172585720 CACTCTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089078 8 - 170955103 CACTCTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     338390 8 +   1495729 CACTCTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     436255 8 -    863181 CACTCTGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29588365 8 -  71996105 CACTCTGG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     226715 8 -   1829203 CACTCTGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30398734 8 + 171630274 CGCTCTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           222745 8 +    515838 CGATCTGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     854000 8 -   1771730 CGCTCTGG
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               317552 8 + 123392446 CACTCTGG
i micMur3.chr6             I 1326 C 0
s proCoq1.NW_012149775v1     122570 8 -   1411461 CACTCTGG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           272004 8 +  18854210 CACTCTAA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            17340 8 -     45298 CATTCCGG
i dasNov3.JH580105         C 0 I 5
e mm10.chr17               58064868 0 -  94987271 C
e canFam3.chr35            26308501 3100 +  26524999 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M

a score=904478.000000
s hg38.chr6_GL000254v2_alt  1442395 88 +   4827813 TGGGGGAAGGGGCTCAGTACCGTGGATCTCCATCTCTTGACACTTGCCCCAGTTTTCACTGGATTTCCCCAGGAGTGGAGTGGCTCTT
s panTro5.chr6             30311756 88 + 175400573 TAGGGGAAGGGGCTCAGTACTGTGGATCTCCATCTCTTGACACTTGCCCCAGTTTTCACTGGATTTCCCCAGGAGTGGAGTGGCTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30546246 88 + 173848474 TAGGGGAAGGGGCTCAGTACTGTGGATCTCCATCTCTTGACACTTGCCCCAGTTTTCACTGGATTTCCCCAGGAGTGGAGTGGCTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     253192 88 +   2037526 TGGGGGAAGGGGCTCAGTACTGTGGATCTCCATCTCTTGACACTTGCCCCAGTTTTCACTGGATTTCCCCAGGAGTGGAGTGGCTCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74920260 88 + 122973662 TAGGGGAAGGGGCTCAGTACTGTGGGTCTCCATCTCTTGACACTTGCCCCAGTTTTCACTGGATTTCCCCAGGAGTGGAGTGGCTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30799569 87 + 172585720 T-GGGGGAAAGGCTCAGTTCCGTGGGTCTCCATCTCTTGACACTTGCCCCAGTTTTCACTGGATTTCCCTGGGAGTGGAGTGGCTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089086 87 - 170955103 T-GGGGAAAAGGCTCAGTTCCATGGGTCTCCATCTCTTGACACTTGCCCCAGTTTTCACTGGATTTCCCTAGGAGTGGAGTGGCTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     338398 87 +   1495729 T-GGGGAAAAGGCTCAGTTCTGTGGGTCTCCATCTCTTGACACTTGCCCCAGTTTTCACTGGATTTCCCTGGGAGTGGAGTGGCTCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     436263 87 -    863181 T-GGGGAAAAGGCTCAGTTCTGTGGGTCTCCATCTCTTGACACTTGCCCCAGTTTTCACTGGATTTCCCTGGGAGTGGAGTGGCTCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29588373 87 -  71996105 T-GGGGAAAAGGCTCAGTTCCGTGGGTCTCCATCTCTTGACACTTGCCCCAGTTTTCACTGGATTTCCCTGGGAGTGGAGTGGCTCTT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     226723 87 -   1829203 T-GGGGAAAAGGCTCAGTTCCGTGGGTCTCCATCTCTTGACACTTGCTCCAGTTTTCACTGGATTTCCCTGGGAGTGGAGTGGCTCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30398742 87 + 171630274 CAGGGGAA-GGGCTCAGCACCATGGGCCTCTGTCTCTTGACACTTGCCCCAGTTTTCACTGGATTTCCCCAAGAGTGGAATGGCTCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           222753 88 +    515838 CAGGGGAAGGGGCTCAGCACCGTGGGCCTCTGTCTCTTGACACTTGCCCCAGTTTTCACTGGATTTCCCCATGAGTGGAGCGGCTCTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     854008 88 -   1771730 TAGGGGAAGGGGCTCAGTGCCATGGGTCTCTGTCTCTTGACACTTGCCCCAGTTTTCACTGGATTTCCCCAAGAGTGGAGTGGCTCTT
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               317560 88 + 123392446 TAGGGGAAAGGGCACAGCACTGCGGGCCTCCTTCTCTTAACACTGCCCCCAGTTTTCAGTGGACTTCCTCAAGAGTAGAGTGACTCTT
i micMur3.chr6             C 0 I 741
s proCoq1.NW_012149775v1     122578 88 -   1411461 TTGGGGAAGGGTCTCAGCACTATGGGCCTCCTTCTCTTAACACTGCCCCCAGCTTTCACTGGACTTCCTCAAAAGTAGAGTGGCTCTT
i proCoq1.NW_012149775v1   C 0 I 4
s otoGar3.GL873550           272012 73 +  18854210 TGGGGGAA---------------GAGCCTCCTTCTCTTAATACTGACCCCTGTTTTCACTGGACTTCTTCAAGAATAGAGTGGCTCTT
i otoGar3.GL873550         C 0 I 4
s mm10.chr17               58064868 74 -  94987271 ------------CCCAGCACT-TGACTCTCT-TCTCTTGATGGTGATACCAGTTTCTTCTGGGCTTCCTCAAGAGCAGGAGGGCTCCT
i mm10.chr17               C 0 C 0
e dasNov3.JH580105            17348  5 -     45298 I
e canFam3.chr35            26308501 3100 +  26524999 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M

a score=146009.000000
s hg38.chr6_GL000254v2_alt  1442483 16 +   4827813 ACTCTCCCTCCCTAGG
s panTro5.chr6             30311844 16 + 175400573 ACTCTCCCTCCCTAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30546334 16 + 173848474 ACTCTCCCTCCCTAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     253280 16 +   2037526 ACTCTCCCTCCCTAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74920348 16 + 122973662 ACTCTCCGTCCCTAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30799656 16 + 172585720 ACTCTCCCTCCCTAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089173 16 - 170955103 ACTCTCCCTCCCTAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     338485 16 +   1495729 ACTCTCCCTCCCTAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     436350 16 -    863181 ACTCTCCCTCCTTAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29588460 16 -  71996105 ACTCTCCCTCCCTAGG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     226810 16 -   1829203 ACTCTCCCTCCATAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30398829 16 + 171630274 ACTCTCCCTCACTAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           222841 16 +    515838 ACTCTCCCTCACTAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     854096 16 -   1771730 ACTCTCCCTCACTAGA
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     122670 16 -   1411461 ACTCTCCTTCGCTAGG
i proCoq1.NW_012149775v1   I 4 C 0
s otoGar3.GL873550           272089 16 +  18854210 ACTTTCCCTCATTAGG
i otoGar3.GL873550         I 4 I 267
s mm10.chr17               58064942  8 -  94987271 GTTCTCTC--------
i mm10.chr17               C 0 C 0
e micMur3.chr6               317648 741 + 123392446 I
e dasNov3.JH580105            17348  5 -     45298 I
e canFam3.chr35            26308501 3100 +  26524999 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M

a score=362984.000000
s hg38.chr6_GL000254v2_alt  1442499 38 +   4827813 GAGCAGCTCTTCCACCCTCCTAATGACTTCTCCACTCC-----
s panTro5.chr6             30311860 38 + 175400573 GAGCAGCTCTTCCACCCTCCTAATGACTTCTCCACTCC-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30546350 38 + 173848474 GAGCAGCTCTTCCACCCTCCTAATGACTTCTCCACTCC-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     253296 38 +   2037526 GAGCAGCTCTTCCACCCTCCTAATGACTTCTCCACTCC-----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74920364 38 + 122973662 GAGCAGCTCTTCCACCCTCCTAATGACTTCTCCACTCC-----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30799672 38 + 172585720 GAGCAACTCTTCCACCCTCCTAATGACTTCTCCACTCC-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089189 38 - 170955103 GAGCAACTCTTCCACCCTCCTAATGACTTCTCCACTCC-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     338501 38 +   1495729 GAGCAACTCTTCCACCCTCCTAATGACTTCTCCGCTCC-----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     436366 38 -    863181 GAGCAACTCTTCCACCCTCCTAATGACTTCTCCACTCC-----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29588476 38 -  71996105 GAGCAACTCTTCCACCCTCCTAATGACTTCTCCACTCC-----
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     226826 38 -   1829203 GAGCAACTCTTCCACCCTCCTAATGACTTTTCCACTCC-----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30398845 38 + 171630274 GAGCAGCTCTTCCACCCTCCCAGTGACTTCTCCACTCC-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           222857 35 +    515838 GAGCAGCTCTTCCACCCTCCTAATGACTT---CACTCC-----
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     854112 38 -   1771730 GAGCAGCTCTTCCACCCTCCTAAGGACTCCTCCACTCC-----
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     122686 38 -   1411461 GAGGAGCTTTTCTGCCCTCCTAGTGCCTTCTCAACTCC-----
i proCoq1.NW_012149775v1   C 0 I 1030
s otoGar3.GL873550           272372 38 +  18854210 GGGAAGCTTTTCTGCCCTCCTAGTGCCTTCTCAATTCC-----
i otoGar3.GL873550         I 267 C 0
s mm10.chr17               58064950 36 -  94987271 -------ACTCCTATCTCCTTTGGAGCTTGCCTACTTAATCTC
i mm10.chr17               C 0 C 0
e micMur3.chr6               317648 741 + 123392446 I
e dasNov3.JH580105            17348  5 -     45298 I
e canFam3.chr35            26308501 3100 +  26524999 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M

a score=95560.000000
s hg38.chr6_GL000254v2_alt  1442537 13 +   4827813 TGCCATGCTTTTT
s panTro5.chr6             30311898 13 + 175400573 TGCCATGCTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30546388 13 + 173848474 TGCCATGCTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     253334 13 +   2037526 TGCCATGCTTTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74920402 13 + 122973662 CGCCATGCTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30799710 13 + 172585720 TACCATGCTTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089227 13 - 170955103 TACCATGCTTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     338539 13 +   1495729 TACCATGCTTTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     436404 13 -    863181 TACCATGCTTTTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29588514 13 -  71996105 TACCATGCCTTTT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     226864 12 -   1829203 -ACCATGCTTTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30398883 13 + 171630274 GGCCATGCTTTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           222892 13 +    515838 CACCATGCTTTCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     854150 13 -   1771730 CGCCATGCTTGCG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           272410 13 +  18854210 CATTATGGCAGTT
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58064986 13 -  94987271 GACCATACTTGTT
i mm10.chr17               C 0 C 0
e micMur3.chr6               317648 741 + 123392446 I
e dasNov3.JH580105            17348  5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M

a score=90185.000000
s hg38.chr6_GL000254v2_alt  1442550 10 +   4827813 CCTCTTTTAG
s panTro5.chr6             30311911 10 + 175400573 CCTCTTTTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30546401 10 + 173848474 CCTCTTTTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     253347 10 +   2037526 CCTCTTTTAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74920415 10 + 122973662 CCTCTTTTAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30799723 10 + 172585720 CCTCTTTTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089240 10 - 170955103 CCTCTTTTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     338552 10 +   1495729 CCTCTTTTAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     436417 10 -    863181 CCTCTTTTAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29588527 10 -  71996105 CCTCTTTCAG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     226876 10 -   1829203 CCTCTTTGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30398896 10 + 171630274 CCTCTTTTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           222905 10 +    515838 CCTCTTTTAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     854163  8 -   1771730 CCTC--TTAC
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               318389 10 + 123392446 cCTCTTCTAT
i micMur3.chr6             I 741 C 0
s otoGar3.GL873550           272424 10 +  18854210 CCTCTTCTAT
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58064999 10 -  94987271 CCCCTTCGAG
i mm10.chr17               C 0 I 1646
e dasNov3.JH580105            17348  5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M

a score=2460902.000000
s hg38.chr6_GL000254v2_alt  1442560 285 +   4827813 CTTTTGAAAACCATCTTTCTCCTTTCTCTGGTTTTCCAAGCCAGATACTCAAATTTGACCCTCCCTGGAGAGTACACCCTCTATGCTCACTATCTCT-TTTCCCTTCTGCTCATCTTAGCATCCCCCAAGTGTTG-CCCTTG------GCTCT--TTTCCAATACCATTGTTT----CTTTTTTATGTTCTCGCTTTCCTGTGGGTGACAGATTATGGAgttgtgggttgaattttgtctgcc--aaggacatattgaagtcctagccccaggtacctacgtatgtggctttattcaaaaa
s panTro5.chr6             30311921 287 + 175400573 CTTTTGAAAACCATCTTTCTCCTTTCTTTGGTTTTCCAAGCCAGATACTCAAATTTGACCCTCCCTGGAGAGTACACCCTCTATGCCCACTATCTCT-TTTCCCTTCTGCTCATCTTAGCATCCCCCAAGTGTTG-CCCTTG------GCTCTCTTTTCCAATACCATTGTTT----CTTTTTTATGTTCTCGCTTTCCTGTGGGTGACAGATTATGGAgttgtgggttgaattttatctgcc--aaagacatattgaagtcctagccccaggtacctacatatgtggctttattcaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30546411 287 + 173848474 CTTTTGAAAACCATCTTTCTCCTTTCTTTGGTTTTCCAAGCCAGATACTCAAATTTGACCCTCCCTGGAGAGTACACCCTCTATGCCCACTATCTCT-TTTCCCTTCTGCTCATCTTAGCATCCCCCAAGTGTTG-CCCTTG------GCTCTCTTTTCCAATACCATTGTTT----CTTTTTTATGTTCTCGCTTTCCTGTGGGTGACAGATTATGGAgtcgtgggttgaattttatctgcc--aaagacatattgaagtcctagccccaggtacctacatatgtggctttattcaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     253357 288 +   2037526 CTTTTGAAAACCATCTTTCTCCTTTCTTTGGTTTTCCAAGCCAGATACTCAAATTTGACCCTCCCTGGAGAGTACACCCTCTACGCTCACTATCTCT-TTTCCCTTCTGCTCATCTTAGCATCCCCCAAGTGTTGCCCCTTG------GCTCTCTTTTCCAATACCATTGTTT----CTTTTTTATGTTCTCGCTTTCCTGTGGGTGACAGATTATGGAgttgtgggttgaattttgtctccc--aaagacatattgaagtcctagccccaggtacctacgtatgtggctttattcaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74920425 287 + 122973662 CTTTTGAAAACCATCTTTCTCCTTTCTTTGGTTTTCCAGGCCACATACTCAAATTTGACCCTCCCTGGAGAGTACACCCTATATCCCCACTATCTCT-TTTCCCTTCTCCTCATCTTAGCCTCAACCAAGTGTTG-TCCTTG------GCTCTCTTTTCCAATACCATTGTTT----CTTTTTTATGTCCTCGCTTTCCTGTGGGTGACAGATTATGGAgttgtgggttgaattgtgtctgcc--aaagacatattgaagtcctagccccaggtatctatgtatgtggctttattcaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30799733 278 + 172585720 CTTTTGAAAACCATTTTTCTCTTTTCTTCAGTTTTCCAAGTCAGATACTCAAATTTGACCCTCCCTGGAGAATATATC---------CACTATCTAT-TTTCCCTTCTCCTCATCTTAGCCTCCCACAAGTGTTG-CCCTTG------GCTCTCTTTTCCAATAGCATTGTTT----CTTTTTTATGTCCTCACTTTCCTGTGGGTGACAGATTATGGAgttgtaggttgaattgtgtctgcc--aaagacatattgaagtcctagccccaggtacctatgtatgtgacttgattcaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089250 278 - 170955103 CTTTTGAAAACCATTTTTCTCTTTTCTTCAGTTTTCCAGGTCAGATACTCAAATTTGACCCTCCCTGGAGAATATATC---------CACTATCTAT-TTTCCCTTCTCCTCATCTTAGCCTCCCACAAGTGTTG-CCCTTG------GCTCTCTTTTCCAATAGCATTGTTT----CTTTTTTATGTCCTCACTTTCCTGTGGGTGACAGATTATGGAgttgtaggttgaattgtgtctgcc--aaagacatattgaagtcctagccccaggtacctatgtatgtgacttgattcaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     338562 278 +   1495729 CTTTTGAAAACCATTTTTCTCTTTTCTTCGGTTTTCCAGGTCAGATACTCAAATTTGACCCTCCCTGGAGAATATATC---------CACTATCTAT-TTTCCCTTCTCCTCATCTTAGCCTCCCACAAGTGTTG-CCCTTG------GCTCTCTTTTCCAATAGCATTGTTT----CTTTTTTATGTCCTCACTTTCCTGTGGGTGACAGATTATGGAgttgtaggttgaattgtgtctgcc--aaagacatattgaagtcctagccccaggtacctaggtatgtgacttgattcaaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     436427 274 -    863181 CTTTTGAAAACCATTTTTCTCTTTTCTTCAGTTTTCCAGGTCAGATACTCAAATTTGACCCTCCCTGGAGAATATATC---------CACTATCTAT-TTTCCCTTCTCCTCATCTTAGCCTCCCACAAGTGTTG-CCCTTG------GCTCTCTTTTCCAATAGCA----TT----CTTTTTTATGTCCTCACTTTCCTGTGGGTGACAGATTATGGAgttgtaggttgaattgtgcctgcc--aaagacatattgaagtcctagccccaggtacctatgtaggtgactttattcaaaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29588537 278 -  71996105 CTTTTGAAAACCATTTTTCTCCTTTCTTCGGTTTTCCAGGTCAGATACTCAAATTTGACCCTCCCTGGAAAATATATC---------CACTATCTAT-TTTCCCTTCTCCTCATCTTAGCCTCCCACAAGTGTTG-CCCTTG------GCTCTCTTTTCCAATAGCATTGTTT----CTTTTTTATGTCCCCACTTTCCTGTGGGTGACAGATTATGGAgttgtaggttgaattgtgtctgcc--aaagacatattgaagtcctagccccaggtacctatgtatgtgactttattcaaaaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     226886 278 -   1829203 CTTTTGAAAACCATTTTTCTCCTTTCTTCGGTTTTCCAGGTCAGATACTCAAATTTGACCCTCCCTGGAGAATATATC---------CACTATCTAT-TTTCCCTTCTCCTCATCTTAGCCTCCCACAAGTGTTG-CCCTTG------GCTCTCTTTTCCAATAGCATTGTTT----CTTTTTCATGTCCTCACTTTCCTGTGGGTGACAGATTATGGAgttgtaggttgaattgtgtctgcc--aaagacatattgaagtcctagccccaggtacctatgtatgcgactttattcaaaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30398906 278 + 171630274 ATTTTGAAAACCATCTTTCTCCTTTCTTTGGTCTCCCAGCCCAGATATTCAAATTTGATCCTTCCTTGAGAATACACCCTCTATCCCCACTGTCTGT-TTTCCTTTCTCCTCATCTTAGCCTCCCCCAAGTGTTG-TCCTTG------GCTCTCTTTTCCAACGCCATTGTTT----CTTTTTCATGTCCTCACTTTCCCATGGGTGACA-GTTATGGAgttgtgggttgaattgtgtctgcc--aaacacatgttgaagtcctagccccaa--------gtatgtgactttattcaaaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           222915 286 +    515838 GTTTTG-GAACCATCTTTCTCCTTTCTTTGGTCTCCCGTGCCAGATATTCAAATTGGATCCTTCCTTGAGAATACACCCTCCATCCCCACTATCTAT-TTATCTTTCTCCTCGTCTTAGCCTCCCCCAAGTGTTA-TCATTG------GCTCTCTTTTCCAACGCCATTGTTT----CTTTTTCATGTCCTCACTTTCCCGTGGGTGACAGGTTATGGAgctgtgcattgaattgtgtctgcc--aaacacatgctgaagtcctagccccaagtacctgtgtatgtgactttattcaaaaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     854171 287 -   1771730 CTTTTGGAAACCATCTTTCTCCTTTCTTTGGTCTCCCGGGCCAGACATTCAAATTGGATCCTTCCGTGAGAATACACCCTCTATCCCCACTATCTGT-TTATCTTTCTCCTCACCTTGGCCTCCCCCAAGTGTTG-TCCTTG------GCTCTCTTTTCCAACGCCATTGTTT----CTTTTTTATGTCCTCACTTTCCCGTGGGTGACAGGTTATGGAgttgtgggttgaattgtgtctgcc--aaacacatgttgaagttctagccccgagtacctatgcatgtgactttattcaaaaa
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               318399 292 + 123392446 CTTTTGAAGACCCTCTTTCTCCTTTCTTTGGTCTCCCAGCCCAGATACTCAAACTTGGCTCTTCCTGGAGAATACCTGCTCCATCCCCTCTGTTCTGTCTCCCTTTCTCCTCATCTTAGCTTCTCTCAAGTCTTG-TCCTAG--------GTTCTTTTCCAGTACCATTATTTCTCACTTTTTTATACTCTCGCTTTCCAGTGGGTGATAGATTATGGAgttgtggattgaattgtgtctgcccaaaagatatgctgaagtcctagccccaggtacctatgtatgtgtccttatttggaaa
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           272434 299 +  18854210 CTTTAGCAAACCCTTTCTTTCCTTTCTTTGGTCTCCCAGCCCAGATGCTCAAGCTTGACTTTTCCTGCAGAATAACTCCTCCATCCCTATTGTCTTA-CTTTCCTTCTCCTCATCTTAGCCTGTCTCAAGTCTTG-CACTTGCACTTGGCTCTCTTTTTCAGTACCATCATTTTTCTCTTCTTTATACCCTCACCTTCCAGTGGGTGGCAGAGAATGGAgttgtgtattgaattgtttctacccaaaagatatgttgaagtcctagtcccagatacctacgtatgtgactttatttggaaa
i otoGar3.GL873550         C 0 I 1
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348   5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M

a score=86107.000000
s hg38.chr6_GL000254v2_alt  1442845 9 +   4827813 tagggtcTT
s panTro5.chr6             30312208 9 + 175400573 tagggtctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30546698 9 + 173848474 tagggtctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     253645 9 +   2037526 taaggtctt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74920712 9 + 122973662 tagggtctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800011 9 + 172585720 tagggtctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089528 9 - 170955103 tagggtctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     338840 9 +   1495729 tagggtctt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     436701 9 -    863181 tagggtctt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29588815 9 -  71996105 tagggtctt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     227164 9 -   1829203 tagggtctt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30399184 9 + 171630274 tagggtctt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           223201 9 +    515838 tagggtcTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     854458 9 -   1771730 tagggtctt
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               318691 9 + 123392446 tagagtctt
i micMur3.chr6             C 0 I 384
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348 5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e otoGar3.GL873550           272733 1 +  18854210 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M

a score=1732953.000000
s hg38.chr6_GL000254v2_alt  1442854 253 +   4827813 ggccagatgaggtggctcacccctgtaatcccagcactttgggagaccaaggtgggcagattgcttgagctcaagagttggagaccagactgatcaacatagcaaaaccctgtccctac-aaaaaatacaaaaattagccaggcatggtgctgtgtgcctgtagtcccacatgctgtgtgcctgtagtcccacctactcgggaggctgatgtgggaagatcacttgagccagtgaggtggaggttgcagtaagc
s panTro5.chr6             30312217 230 + 175400573 ggccagatgaggtggctcacccctgtaatcccagcactttgggagaccaaggtgggcagattgcttgagctcaagagttggagaccagactgaccaacatagcaaaaccctgtctctac-aaaaaatacaaaaattagccaggcatggtgctgtgtgcctgtagtcccac-----------------------ctacttgggaggctgatgtgggaagatcacttgagccagtgaggtggaggttgcagtaagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30546707 230 + 173848474 ggccagatgaggtggctcacccctgtaatcccagcactttgggagaccaaggtgggcagattgcttgagctcaagagttggagaccagactgaccaacatagcaaaaccctgtctctac-aaaaaatacaaaaattagccaggcatggtgctgtgtgcctgtagtcccac-----------------------ctactcgggaggctgatgtgggaagatcacttgagccagtgaggtggaggttgcagtaagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     253654 253 +   2037526 ggccagatgaggtggctcacccctgtaatcccagcactttgggagaccaaggtgggcagattgcttgagctcaagagttggagaccagactgaccaacatagcaaaaccccgtctctac-aaaaaatacaaaaattagccaggcatggtgctgtgtgcctgtagtcccacgtgctgtgtgcctgtagtcccacctagtcgggaggctgatgtgggaagatcacttgagccagtgaggtggaggttgcagtaagc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74920721 230 + 122973662 ggccagatgaggtggctcacccctgtaatcccagcactttgggagaccaaggtgggcagattgcttgagctcaagagttggagaccagactgaccaacatagcaaaaccccgtctctac-aaaaaatacaaaaattagccaggcatggtgctgtgtgcctgtagtcccac-----------------------ctactcgggaggctgttgtgggaagatcacttgagccagtgaggcggaggttgcagtaagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800020 231 + 172585720 ggccagatgaggtggctcacccctgtaatcccagcactttgggagaccaaggtgggcagatcgcttgagctcaagagtttgagaccagcctgaccaacatggcaaaaccccatctctacaaaaaaatacaaaaattagccaggcatggtgctgtgtgcctgtagtcccag-----------------------ttacttgggaggctgatgcaggaagatcacttgagccagtgaggcggaggttgcagtaagc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089537 231 - 170955103 ggccagatgaggtggctcacccctgtaatcccagcactttgggagaccaaggtgggcagatcgcttgagctcaagagtttgagaccagcctgaccaacatggcaaaaccccgtctctacaaaaaaatacaaaaattagccaggcatggtgctgtgtgcctgtagtcccag-----------------------ttacttgggaggctgatgcaggaagatcacttgagccagtgaggcggaggttgcagtaagc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     338849 231 +   1495729 ggccagatgaggtggctcacccctgtaatcccagcactttgggagaccaaggtgggcagatcgcttgagctcaagagtttgagaccagcctgaccaacatggcaaaaccccgtctctacaaaaaaatacaaaaattagccaggcttggtgctgtgtgcctgtagtcccag-----------------------ttacttgggaggctgacgcaggaagatcacttgagccagcgaggcggaggttgcagtaagc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     436710 231 -    863181 ggccagatgaggtggctcacccctataatcccagcactttgggagaccaaggtgggcagattgcttgagctcaagagtttgagaccagcctgaccaacatggcaaaaccctgtctctacaaaaaaatacaaaaattagccaggcatggtgctgtgtgcctgtagtcccag-----------------------ttacttggggggctgatgtgggaagatcacttgagccagtgaggcggaggttacagtaagc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29588824 231 -  71996105 ggccagatgaggtagctcacccctgtaattctagcactttgggagaccaaggtgggcagatcgcttgagctcaagagtttgagaccagcctgaccaacatggcaaaaccctgtctctacaaaaaaatacaaaaattagccaggcatggtgctgtgtgcccgtagtcccag-----------------------ttacttgggaggctaatgcgggaagatcacttgagccagtgaggcggaggttgcagtaagc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     227173 231 -   1829203 ggccagatgaggtggctcacccctgtaatcccagcactttgggagaccaaggtgggcagatcacttgagctgaagagtttgagaccagcctgaccaacatggcaaaaccccgtttctacaaaaaaatacaaaaattagtcaggcatggtgctgtgtgtctgcagtcccag-----------------------ttacttgggaggctgatgcaggaagatcacttgagccagtgaggcggaggttgcagtaagc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30399193 229 + 171630274 ggccagttgaggtggctcacccctgtaatcccagcactttcagagactgaggaaggcagattgcttgagctcaagtgtttcagaccagtctgaccaacatggcaaaaccctgtctctat-aaaaaatacaaaaatttgccaggcatggt-gtgtgtgcctgtagtcccag-----------------------ctacttgggaggctgatgtgggaagatctcttgagccagaaaggcggaggttgcagtaagc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           223210 228 +    515838 ggccagttgaggtggctcacccctgtaatcccagcactttgggagactaaggaaggcagatcgcttgagctcaagtgtttgagaccagtctgaccagcatggcaaaaccctgtctctac---aaaatacaaaaatttgccaggcatggtggtgtgtgcctgtagtcccag-----------------------ctacttgggaggctgatgtgggaagatctcttgagccagaaaggcggaggttgcagtaagc
i saiBol1.JH378341         C 0 M 1393
s cebCap1.NW_016107755v1     854467 224 -   1771730 ggccagttgaggtggctcacccctgtaatcccagcactttgggagactgaggaaggcagatcgcttgagctcaagtgtttgagaccagtctgaccaacatggcaaaacc------ctac-aaaaaacacaaaaattcaccaggcatggtggtgtgtgcctgtagtcccag-----------------------ctacttgggaggctgatgtgggaagatctcttgagccagaatggtggaggttgcagtaagc
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               318700 384 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348   5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e otoGar3.GL873550           272733   1 +  18854210 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M

a score=331882.000000
s hg38.chr6_GL000254v2_alt  1443107 50 +   4827813 cgagatcatgccactgcactgcagcctgggtgatagagccagaccttgtc
s panTro5.chr6             30312447 50 + 175400573 cgagatcatgccactgcactgcagcctgggtgatagagccagaccttgtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30546937 50 + 173848474 cgagatcatgccactgcactgcagcctgggtgatagagccagaccttgtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     253907 50 +   2037526 cgagatcatgccactgcactgcagcctgggtgatagagccagaccttgtc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74920951 50 + 122973662 caagatcatggcattgcactgcagcctgggtgatagagccagaccttgtc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800251 50 + 172585720 caagatcatgccactgcattccagcctgggtgatagagccagaccttgtc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089768 50 - 170955103 cgagatcatgccactgcattccagcctgggtgatagagccagaccttgtc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     339080 50 +   1495729 cgagatcatgccactgcattccagcctgggtgatagagccagaccttgtc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     436941 50 -    863181 cgagatcatgccactgcactctagcctgggtgatagagccagaccttgtc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29589055 50 -  71996105 cgagatcatgccactgcactccagcctgggtgatagagccagattttgtc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     227404 50 -   1829203 caagatcatgccactgcactccagcctgggtgatagagccagaccttgtc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30399422 50 + 171630274 cgagactgtgccattgcaatccagcctgggtgatagaaccagaccttttc
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     854691 50 -   1771730 cgaggttgtgccactgcactccagcctgggtgatagaaccagaccttgtc
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               318700 384 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348  5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           223438 1393 +    515838 M
e otoGar3.GL873550           272733  1 +  18854210 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M

a score=37082.000000
s hg38.chr6_GL000254v2_alt  1443157 8 +   4827813 tcaaaaaa
s panTro5.chr6             30312497 8 + 175400573 tcaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30546987 8 + 173848474 tcaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     253957 8 +   2037526 tcaagaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921001 7 + 122973662 tcaa-Caa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800301 8 + 172585720 tcaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089818 8 - 170955103 tcaaaaaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     436991 8 -    863181 tcaaaaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29589105 8 -  71996105 tctaaaaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     227454 8 -   1829203 tcaaaaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30399472 8 + 171630274 tcaaaaaa
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     854741 8 -   1771730 tcaaaaaa
i cebCap1.NW_016107755v1   C 0 I 51
e micMur3.chr6               318700 384 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348 5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           223438 1393 +    515838 M
e otoGar3.GL873550           272733 1 +  18854210 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M
e macNem1.NW_012012100v1     339130 0 +   1495729 C

a score=15230.000000
s hg38.chr6_GL000254v2_alt  1443165 4 +   4827813 gaaa
s panTro5.chr6             30312505 4 + 175400573 gaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30546995 4 + 173848474 gaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     253965 4 +   2037526 gaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921008 4 + 122973662 gaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800309 4 + 172585720 aaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089826 4 - 170955103 aaaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     436999 4 -    863181 aaaa
i cerAty1.NW_012002535v1   C 0 I 10
s chlSab2.chr17            29589113 4 -  71996105 aaaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     227462 4 -   1829203 aaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30399480 4 + 171630274 agaa
i calJac3.chr4             C 0 C 0
e micMur3.chr6               318700 384 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348 5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           223438 1393 +    515838 M
e otoGar3.GL873550           272733 1 +  18854210 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e cebCap1.NW_016107755v1     854749 51 -   1771730 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M
e macNem1.NW_012012100v1     339130 0 +   1495729 C

a score=1722.000000
s hg38.chr6_GL000254v2_alt  1443169 1 +   4827813 g
s panTro5.chr6             30312509 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30546999 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     253969 1 +   2037526 g
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921012 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800313 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089830 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29589117 1 -  71996105 g
i chlSab2.chr17            C 0 I 7
s colAng1.NW_012115577v1     227466 1 -   1829203 g
i colAng1.NW_012115577v1   C 0 I 10
s calJac3.chr4             30399484 1 + 171630274 a
i calJac3.chr4             C 0 C 0
e micMur3.chr6               318700 384 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348 5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           223438 1393 +    515838 M
e otoGar3.GL873550           272733 1 +  18854210 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e cebCap1.NW_016107755v1     854749 51 -   1771730 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M
e cerAty1.NW_012002535v1     437003 10 -    863181 I
e macNem1.NW_012012100v1     339130 0 +   1495729 C

a score=6790.000000
s hg38.chr6_GL000254v2_alt  1443170 3 +   4827813 aaa
s panTro5.chr6             30312510 3 + 175400573 aaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547000 3 + 173848474 aaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     253970 3 +   2037526 aaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921013 3 + 122973662 aaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800314 3 + 172585720 aaa
i rheMac8.chr4             C 0 I 14
s macFas5.chr4             30089831 3 - 170955103 aaa
i macFas5.chr4             C 0 C 0
s calJac3.chr4             30399485 3 + 171630274 aag
i calJac3.chr4             C 0 C 0
e micMur3.chr6               318700 384 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348 5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           223438 1393 +    515838 M
e otoGar3.GL873550           272733 1 +  18854210 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e cebCap1.NW_016107755v1     854749 51 -   1771730 I
e colAng1.NW_012115577v1     227467 10 -   1829203 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M
e chlSab2.chr17            29589118 7 -  71996105 I
e cerAty1.NW_012002535v1     437003 10 -    863181 I
e macNem1.NW_012012100v1     339130 0 +   1495729 C

a score=6514.000000
s hg38.chr6_GL000254v2_alt  1443173 4 +   4827813 gaaa
s panTro5.chr6             30312513 4 + 175400573 gaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547003 4 + 173848474 gaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     253973 4 +   2037526 gaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921016 4 + 122973662 gaaa
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30089834 4 - 170955103 aaaa
i macFas5.chr4             C 0 C 0
s calJac3.chr4             30399488 4 + 171630274 aaaa
i calJac3.chr4             C 0 I 501
e micMur3.chr6               318700 384 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348 5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           223438 1393 +    515838 M
e otoGar3.GL873550           272733 1 +  18854210 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e cebCap1.NW_016107755v1     854749 51 -   1771730 I
e colAng1.NW_012115577v1     227467 10 -   1829203 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M
e chlSab2.chr17            29589118 7 -  71996105 I
e cerAty1.NW_012002535v1     437003 10 -    863181 I
e macNem1.NW_012012100v1     339130 0 +   1495729 C
e rheMac8.chr4             30800317 14 + 172585720 I

a score=1500.000000
s hg38.chr6_GL000254v2_alt  1443177 1 +   4827813 g
s panTro5.chr6             30312517 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547007 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     253977 1 +   2037526 g
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921020 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30089838 1 - 170955103 g
i macFas5.chr4             C 0 I 11
e micMur3.chr6               318700 384 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348 5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           223438 1393 +    515838 M
e otoGar3.GL873550           272733 1 +  18854210 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e cebCap1.NW_016107755v1     854749 51 -   1771730 I
e calJac3.chr4             30399492 501 + 171630274 I
e colAng1.NW_012115577v1     227467 10 -   1829203 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M
e chlSab2.chr17            29589118 7 -  71996105 I
e cerAty1.NW_012002535v1     437003 10 -    863181 I
e macNem1.NW_012012100v1     339130 0 +   1495729 C
e rheMac8.chr4             30800317 14 + 172585720 I

a score=59145.000000
s hg38.chr6_GL000254v2_alt  1443178 123 +   4827813 aaagaaagaaagaaaga--------------------------aagaaagaaagaaagaagaaagggagggaaagaagga--------aggaaggaagcaaggaaagaaggaaggagggagggagggagggaaggaaagaaggaaagaaagaGAGAG
s panTro5.chr6             30312518 145 + 175400573 aaagaaagaaagaaaga------gagagagagagaaggaaagaaagaaagaaggaaagaaaaaagaaaaagaaagaaaga------gaaagaaagagggaaagaaggaaggaaggagggagggagggagggaaggaaagaaggaaagaaagagagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547008 115 + 173848474 agagagagaga--------------------------------aggaaagaaagaaagaagaaggaaagaaaaagaaa----------aagaaagaaagagggaaagaaggaaggaaggagggagggagggaaggaaagaaggaaagaaagagagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     253978 157 +   2037526 aaagaaagaaagaaagaaagaaagaaagagagagaagagaagaaagaaagaaagaaagaaaagaaagaaagagaggaggaaagaaggaaggaaggaagcaaggaaagaaggaaggagggagggagggagggaaggaaagaaggaaagaaagaGAGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921021  93 + 122973662 aaggaaaga----------------------------------aagaaagaacttaggaa----------------------------aggaagggagggaggtatgtagg--tgtgggagggagggagggaggggagggagggaggaaagagagag
i nomLeu3.chr1a            C 0 C 0
e micMur3.chr6               318700 384 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348   5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           223438 1393 +    515838 M
e otoGar3.GL873550           272733   1 +  18854210 I
e aotNan1.NW_018496904v1     339110 4211 -    383796 I
e cebCap1.NW_016107755v1     854749  51 -   1771730 I
e calJac3.chr4             30399492 501 + 171630274 I
e colAng1.NW_012115577v1     227467  10 -   1829203 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M
e chlSab2.chr17            29589118   7 -  71996105 I
e cerAty1.NW_012002535v1     437003  10 -    863181 I
e macNem1.NW_012012100v1     339130   0 +   1495729 C
e macFas5.chr4             30089839  11 - 170955103 I
e rheMac8.chr4             30800317  14 + 172585720 I

a score=18310.000000
s hg38.chr6_GL000254v2_alt  1443301 14 +   4827813 AGAAAAAgaaaata
s panTro5.chr6             30312663 14 + 175400573 agaaaAAgaaaata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547123 14 + 173848474 agaaaAAgaaaata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     254135 14 +   2037526 AGAAAAAgaaaata
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921114 14 + 122973662 agaaaaagaaaata
i nomLeu3.chr1a            C 0 C 0
s aotNan1.NW_018496904v1     343321 14 -    383796 agaaaaagaaaaTT
i aotNan1.NW_018496904v1   I 4211 C 0
e micMur3.chr6               318700 384 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348  5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           223438 1393 +    515838 M
e otoGar3.GL873550           272733  1 +  18854210 I
e cebCap1.NW_016107755v1     854749 51 -   1771730 I
e calJac3.chr4             30399492 501 + 171630274 I
e colAng1.NW_012115577v1     227467 10 -   1829203 I
e manLeu1.NW_012107142v1     280130 958 -    735854 M
e chlSab2.chr17            29589118  7 -  71996105 I
e cerAty1.NW_012002535v1     437003 10 -    863181 I
e macNem1.NW_012012100v1     339130  0 +   1495729 C
e macFas5.chr4             30089839 11 - 170955103 I
e rheMac8.chr4             30800317 14 + 172585720 I

a score=4500.000000
s hg38.chr6_GL000254v2_alt  1443315 1 +   4827813 g
s panTro5.chr6             30312677 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547137 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     254149 1 +   2037526 g
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921128 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800331 1 + 172585720 g
i rheMac8.chr4             I 14 C 0
s macFas5.chr4             30089850 1 - 170955103 g
i macFas5.chr4             I 11 C 0
s chlSab2.chr17            29589125 1 -  71996105 g
i chlSab2.chr17            I 7 C 0
s manLeu1.NW_012107142v1     281114 1 -    735854 G
i manLeu1.NW_012107142v1   M 958 C 0
s aotNan1.NW_018496904v1     343335 1 -    383796 G
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               318700 384 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348 5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           223438 1393 +    515838 M
e otoGar3.GL873550           272733 1 +  18854210 I
e cebCap1.NW_016107755v1     854749 51 -   1771730 I
e calJac3.chr4             30399492 501 + 171630274 I
e colAng1.NW_012115577v1     227467 10 -   1829203 I
e cerAty1.NW_012002535v1     437003 10 -    863181 I
e macNem1.NW_012012100v1     339130 0 +   1495729 C

a score=5500.000000
s hg38.chr6_GL000254v2_alt  1443316 1 +   4827813 g
s panTro5.chr6             30312678 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547138 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     254150 1 +   2037526 g
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921129 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800332 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089851 1 - 170955103 g
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29589126 1 -  71996105 g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     281115 1 -    735854 G
i manLeu1.NW_012107142v1   C 0 C 0
s aotNan1.NW_018496904v1     343336 1 -    383796 G
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           272734 1 +  18854210 g
i otoGar3.GL873550         I 1 C 0
e micMur3.chr6               318700 384 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348 5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           223438 1393 +    515838 M
e cebCap1.NW_016107755v1     854749 51 -   1771730 I
e calJac3.chr4             30399492 501 + 171630274 I
e colAng1.NW_012115577v1     227467 10 -   1829203 I
e cerAty1.NW_012002535v1     437003 10 -    863181 I
e macNem1.NW_012012100v1     339130 0 +   1495729 C

a score=19206.000000
s hg38.chr6_GL000254v2_alt  1443317 3 +   4827813 gtc
s panTro5.chr6             30312679 3 + 175400573 gtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547139 3 + 173848474 gtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     254151 3 +   2037526 gtc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921130 3 + 122973662 gtc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800333 3 + 172585720 gtc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089852 3 - 170955103 gtc
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29589127 3 -  71996105 gtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     281116 3 -    735854 GTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     227477 3 -   1829203 gtc
i colAng1.NW_012115577v1   I 10 C 0
s aotNan1.NW_018496904v1     343337 3 -    383796 GTC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           272735 3 +  18854210 gtc
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               318700 384 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348 5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           223438 1393 +    515838 M
e cebCap1.NW_016107755v1     854749 51 -   1771730 I
e calJac3.chr4             30399492 501 + 171630274 I
e cerAty1.NW_012002535v1     437003 10 -    863181 I
e macNem1.NW_012012100v1     339130 0 +   1495729 C

a score=129725.000000
s hg38.chr6_GL000254v2_alt  1443320 22 +   4827813 ttttcatcaagttcagatgagg
s panTro5.chr6             30312682 22 + 175400573 ttttcatcaagttcaaatgagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547142 22 + 173848474 ttttcatcaagttcaaatgagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     254154 22 +   2037526 ttttcatcaagttcagatgagg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921133 22 + 122973662 ttttcatcaagttcaaatgagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800336 22 + 172585720 tattcatcaagtttaaatgaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089855 22 - 170955103 tattcatcaagtttaaatgaga
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     437013 22 -    863181 ttttcatcaagtttaaatgaga
i cerAty1.NW_012002535v1   I 10 C 0
s chlSab2.chr17            29589130 22 -  71996105 tattcatcaagtttaaatgaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     281119 22 -    735854 TATTCatcaagtttaaatgaga
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     227480 22 -   1829203 tattcataaagtttaaatgaga
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     343340 22 -    383796 TCATCGtcaagtttaaatgaag
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           272738 22 +  18854210 ttttcatcaagtttaaatgagg
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               318700 384 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348  5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           223438 1393 +    515838 M
e cebCap1.NW_016107755v1     854749 51 -   1771730 I
e calJac3.chr4             30399492 501 + 171630274 I
e macNem1.NW_012012100v1     339130  0 +   1495729 C

a score=89968.000000
s hg38.chr6_GL000254v2_alt  1443342 12 +   4827813 tcatattggatc
s panTro5.chr6             30312704 12 + 175400573 tcatattggatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547164 12 + 173848474 tcatattggatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     254176 12 +   2037526 tcatattggatc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921155 12 + 122973662 tcatattggatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800358 12 + 172585720 tcatattggatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089877 12 - 170955103 tcatattggatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     339130 12 +   1495729 tcatattggatt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     437035 12 -    863181 tcatattggatt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29589152 12 -  71996105 tcatattggatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     281141 12 -    735854 tcatattggatt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     227502 12 -   1829203 tcatattggatt
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496904v1     343362 12 -    383796 ccatattggatt
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           272760 12 +  18854210 ttgtactggatt
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               318700 384 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348  5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           223438 1393 +    515838 M
e cebCap1.NW_016107755v1     854749 51 -   1771730 I
e calJac3.chr4             30399492 501 + 171630274 I

a score=103015.000000
s hg38.chr6_GL000254v2_alt  1443354 14 +   4827813 agggtgggccatta
s panTro5.chr6             30312716 14 + 175400573 agggtgggccatta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547176 14 + 173848474 agggtgggccatta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     254188 14 +   2037526 aggatgggccatta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921167 14 + 122973662 agtgtgggccatta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800370 14 + 172585720 atggtgggccatta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089889 14 - 170955103 atggtgggccatta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     339142 14 +   1495729 atggtgggccatta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     437047 14 -    863181 atggtgggccatta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29589164 14 -  71996105 atggtggcccatta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     281153 14 -    735854 atggtgggccatta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     227514 14 -   1829203 atggtgggccatta
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     854800 14 -   1771730 agggtgggccctta
i cebCap1.NW_016107755v1   I 51 C 0
s aotNan1.NW_018496904v1     343374 14 -    383796 agggtgggccctta
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           272772 14 +  18854210 acaatggactctaa
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               318700 384 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348  5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e canFam3.chr35            26308501 3100 +  26524999 I
e saiBol1.JH378341           223438 1393 +    515838 M
e calJac3.chr4             30399492 501 + 171630274 I

a score=10920.000000
s hg38.chr6_GL000254v2_alt  1443368 1 +   4827813 t
s panTro5.chr6             30312730 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547190 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     254202 1 +   2037526 t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921181 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800384 1 + 172585720 t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089903 1 - 170955103 t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     339156 1 +   1495729 t
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     437061 1 -    863181 t
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29589178 1 -  71996105 t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     281167 1 -    735854 t
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     227528 1 -   1829203 t
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     854814 1 -   1771730 t
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     343388 1 -    383796 t
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           272786 1 +  18854210 t
i otoGar3.GL873550         C 0 I 22
s canFam3.chr35            26311601 1 +  26524999 t
i canFam3.chr35            I 3100 C 0
e micMur3.chr6               318700 384 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348 5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e saiBol1.JH378341           223438 1393 +    515838 M
e calJac3.chr4             30399492 501 + 171630274 I

a score=2363323.000000
s hg38.chr6_GL000254v2_alt  1443369 241 +   4827813 aagaggagggaaattttgacac--agacacatggga-----gacggccatgtg-aaaatgctgtcagagattggagtgaggcatctacaagccaaagaatgccacggattgccagcaaacaccaggagctagaagaggcaatgaagcattttttcctagagcctttggagagagcatggctctgctgacacc-ttgacttcagacttcttgcttccaaaactgtaagagaatgtg----tc-attgtttcaagcc
s panTro5.chr6             30312731 241 + 175400573 aagaggagggaaattttgacac--agacacatggga-----gacggccatggg-aaaatgctgtcagagattggagtgaggcatctacaagccaaagaatgccacggattgccagcaaacaccaggagctagaagaggcaatgaagcattgtttcctagagcctttggagagagcatggctctgctgacacc-ttgatttcagacttcttgcttccagaactgtaagagaatgtg----tc-attgtttcaagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547191 241 + 173848474 aagaggagggaaattttgacac--agacacatggga-----gacggccatggg-aaaatgctgtcagagattggagtgaggcatctacaagccaaagaatgccacggattgccagcaaacaccaggagctagaagaggcaatgaagcattgtttcctagagcctttggagagagcatggctctgctgacacc-ttgatttcagacttcttgcttccagaactgtaagagaatgtg----tc-attgtttcaagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     254203 241 +   2037526 aagaggagggaaattttgacac--agacacatggga-----gacggccatgtg-aaaatgctgtcagagattggagtgaggcatctacaagccaaagaatgccacggattgccagcaaacaccaggagctagaagaggcaatgaagcattttttcctagagcctttggagagagcatggctctgctgacacc-ttgacttcagacttcttgcttccaaaactgtaagagaatgtg----tc-attgtttcaagcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921182 241 + 122973662 aagaggagggaaattttgacac--agacacatggga-----gacggccatgtg-aaaatgctgtcagagatcggagtgaggcatctacaagccaaagaatgccgtggattgccagcaaacaccaggagctagaagaggcaatgaagcattctttcctagagcctttggacagagcatggctctgctgacacc-ttgatttcagacttcttgcttccagaactgtaagagaatgtg----tc-attgtttcaagcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800385 242 + 172585720 aagaagagggaaattttgacac--agacacatggga-----gacggccatgtg-aaaatgcggtcagagattggagtgaggcatctacaagccaaagaatgccacagattgccagcaaacaccaggaactagaagaggcaatgaagcgttctttcctagacgctttggagagagcatggctctgctgacacc-ttgatttcagaattcttgcttccagaactgtaagagaatgtg----tctattgtttcaagcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30089904 242 - 170955103 aagaagagggaaattttgacac--agacacatggga-----gacggccatatg-aaaatgcggtcagagattggagtgaggcatctacaagccaaagaatgccacagattgccagcaaacaccaggaactagaagaggcaatgaagcattctttcctagactctttggagagagcatggctctgctgacacc-ttgatttcagaatttttgcttccagaactgtaagagaatgtg----tccattgtttcaagcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     339157 242 +   1495729 aagaagagggaaatttcgacac--agacacatggga-----gacggccatgtg-aaaatgcggtcagagattggagtgaggcatctacaagccaaagaatgccacagattgccagcaaacaccaggaactagaagaggcaatgaagcattctttcctagactctttggagagagcatggctctgctgacacc-ttgatttcagaatttttgcttccagaactgtaagagaatgtg----tccattgtttcaagcc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     437062 234 -    863181 aagaagagggaaattttgacac--agacacatggga-----gatggccatgtg-aaaatgcggtcagagattggagtcaggcat--------caaagaatgccgcagattgccagcaaacaccaggaactagaagaggcaatgaagcgttctttcctagaccctttggagagagcatggctctgctgacacc-ttgatttcagaattcttgcttccagaactgtaagagaatgtg----tctattgtttcaagcc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29589179 242 -  71996105 aagaagagggaaattttgacac--agacacatggga-----gacggccatgtg-aaaatgcggtcagagattggagtgaggcatctacaagccaaagaatgctgcagattgccagcaaacaccaggaactagaagaggcaatgaagcgttctttcctagaccctttggagagagcatggctctgctgacacc-ttgatttcagaattcttgcttccagaactgtaagagaatgtg----tctattgtttcaagcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     281168 242 -    735854 aagaagagggaaattttgacac--agacacatggga-----gacagccatgtg-aaaatgcggtcagagattggagtgaggcatctacaagccaaagaatgccgcagattgccagcaaacaccaggaactagaagaggcaatgaagcgttctttcctagaccctttggagagagcatggctctgctgacacc-ttgatttcagaattcttgcttccagaactgtaagagaatgtg----tctattgtttcaagcc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     227529 242 -   1829203 aagaagagggaaattttaacac--agacacattgga-----gacggccatgtg-aaaatgcgatcagagattagagtgaggcatctacaagccaaagaatgccgcagattgccagcaaacaccaggaactagaagaggcaatgaagcgttctttcctagaccctttggagagagcaaggctctgctgacacc-ttgatttcagaattcttgcttccagaactgtaagagaatgtg----tctattttttcaagcc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30399993 242 + 171630274 aagaagagggaaattttgacac--agacacagggga-----gacagcaatgtg-aaaatggagccagagattggagtgatgcatatacaagccaaggaatggcatggattgccagcaaatactagaagctggaagaggcaatgaagcattctttcctagaccttttggagagagcatggctctgctgacacc-gtgatttcagacttcttgcttccagaactgtaagagaatgtg----tctattgtttcaggcc
i calJac3.chr4             I 501 C 0
s cebCap1.NW_016107755v1     854815 243 -   1771730 aagaagagggaaattttgacac--agacacaggggagatgggacggccatgtg-aaaatggagtcagagattggagtgatgcatctgcaagccacagaatggcgtggatcgccagccaataccaggagctggaagaggcaatgaagcgttct----tagaccctttggagagagcatggctctgctgacacc-ttgacttcaggcttcttgcttccagaactgtaagagaatgtg----tctgttgtttcaagcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     343389 232 -    383796 aagaagagggaaattttgacac--agacacagggta-----gacagccatgtg-aaaatggagtcagagattgga----------cacaagccaaggaatggcgtggattgccagcaaataccagaagctggaagaggcaatgaagcattctttcctagaccctttggagagagcgtggctctgctgacacc-ttgatttcagacttcttgcttccagaactgtaagagaatgtg----tctattgtttcaagcc
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           272809 227 +  18854210 aggaagaggaaaatttagacag--agagacacggga-----ga-ggccaggtgaaaaatgcagagagagattagagtgacacatctaaaggccaaggaacaccaagaattgccagcaaacac--------------accaaagaccagttcttttctagatcctttggagacaggattgctctatcaacatc-ttgatttcagacttctagcttccagaactgtgagaaagtgt-----tctgttgttttaagcc
i otoGar3.GL873550         I 22 I 370
s canFam3.chr35            26311602 231 +  26524999 atgaggagaccaactcagacacatagacacagagta-----gaaggctatgtg-aaggtgcaggtggagactggcctgatgtaccaaccagcctaggaacacccagaattg-cagtaagcaccaggaaccagaggaggcagggaaaggttcctggccagaccctttggaggga-----gctacgcaaatgtcattgcatccagcttcctccctt------------gagggtgtgagcttctcctgtctctagca
i canFam3.chr35            C 0 C 0
e micMur3.chr6               318700 384 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348   5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e saiBol1.JH378341           223438 1393 +    515838 M

a score=769632.000000
s hg38.chr6_GL000254v2_alt  1443610 122 +   4827813 ---------acacagtctatggtgatgtgttatggaagccctaggaaactaatataGCAGATAAGT-------------------------tgtgtgtgtgtgtgtgcatgta--tacgtgtgtgtgtgt----------ccgtctgtgtAGGGAAATACCGTGGAAA-
s panTro5.chr6             30312972 135 + 175400573 ---------acacagtctatggtgatgtgttatggaagccctaggaaactaatataGCAGATAAgtgtg--------------------tgtgtgtgtgtgtatgtgcatgta--tacgtgtgtgtgtgt--gtgtccatctgtctgtgtAGGGAAATATCGTGGAAA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547432 135 + 173848474 ---------acacagtctatggtgatgtgttatggaagccctaggaaactaatataGCAGATAAgt--g--------------------tgtgtgtgtgtgtatgtgcatgta--tacgtgtgtgtgtgtgtgtgtccatctgtctgtgtAGGGAAATATCGTGGAAA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     254444 110 +   2037526 ---------acacagtctatggtgatgtgttatggaagccctaggaaactaatataGCAGATAAGT-------------------------tgtgtgtgtgtgt--------------gtgtgtgtgtgt----------CCGTCTGTGTAGGGAAATACCGTGGAAA-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921423 123 + 122973662 ---------acacagtctgtggtgatgtgttatggaagccctaggaaactaatataGCAGATAAgt----------------------------gtgtgtgtgtgtgcgtgta--tacgtgtgtgtgtgt------ccatctgtctgtgtAGGGAAATACCATGGAAA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800627 138 + 172585720 ---------acacagtctatggtgatgtgttatggaagccctaggaaactaatataGCAGATAAgtgtg--------------------tgtgtgtgtgtgtgtgtgcatgcatgtatgtgtgtgtgtgtgtgtgtCCGTCTGTCT-TGCAGGGAAATAACATGGAAA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30090146 106 - 170955103 ---------acgcagtctatggtgatgtgttatggaagccctaggaaactaatataGCAGATAA----------------------------------------------------gtgtgtgtgtgtgtgtgggtccgtctgtCT-TGCAGGGAAATACCATGGAAA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     339399 128 +   1495729 ---------acacagtctatggtgatgtgttatggaagccctaggaaactaatataGCAGATAA----------------------------Ctgtgtgtgtgtgtgcatgca--tgtatgtgtgtgtgtgtgtgtccgtctgtCT-TGCAGGGAAATACCATGGAAA-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     437296 136 -    863181 ---------acacagtctatggtgatgtgttatggaagccctaggaaactaatataGCAGATAAgtgtg--------------------tgtgtgtgtgtgtgcatgcatgca--tgtatgtgtgtgtgtgtgtgtccgtctgtCT-TGCAGGGAAATAACATGGAAA-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29589421 156 -  71996105 ---------acacagtctatggtgatgtgttatggaagccctaggaaactaatataGCAGATAAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgca--tgtatgtgtgtgtgtgtgtgtCCGTCTGTCT-TGCAGGGAAATACCATGGAAA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     281410 108 -    735854 ---------acacagtctatggtgatgtattatggaagccctaggaaactaatataGCAGATAAgtgtg--------------------------------------------------tgtgtgtgtgtgtgtgtccgtctgtCT-TGCAGGGAAATAACATGGAAA-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     227771 146 -   1829203 ---------acacagtctatggtgatgtgttatggaagccctaggaaactaatataGCAGAtgtgtgtg------------tgtgtgtgtgtgtgtgtgCGCGCGCGCATGCATGTATATGTGTGTGTGTGTGCGTCCGTCTGTCT-TGCAGGGAAATACCATGGAAA-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30400235 121 + 171630274 ---------acacagtatatggtgatgtgctatggaagccctaggaaactaatataGGGGATAAgt--------------------------gtgtgtgtgtgtgtctgtgca--catgtgcgcgtgtgt----------gtgGCTGTGTAGGGAACTATCATGGAAA-
i calJac3.chr4             C 0 I 1
s cebCap1.NW_016107755v1     855058 117 -   1771730 ---------acacagtatatggtgatgtgttatggaagccctaggaaattaatataGGGGATAA------------------------------GTGTGTGTGTGTCTGTACA--CACGTGCACGTGTGT----------GTGACTGTGTAGGGAACTATCATGGAAA-
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496904v1     343621 117 -    383796 ---------acacagtatatggtgatgtgttatggaagccctaggaaattaatataGGGGATAA------------------------------gtgtgtgtgtgtctgtgca--catgtgtgcatgtgt----------gtgactgtgtAGGGAACTATCATGGAAA-
i aotNan1.NW_018496904v1   C 0 I 1
s canFam3.chr35            26311833  88 +  26524999 gctggtttgaagcagcct---------tgttgtagcagccctaggaaaccaatacaGGTGTCCAG--------------------------------------------------GGGGTCAAAACGGGA-----------------TGCAG-----CACCACAGAAAA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               318700 384 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348   5 -     45298 I
e proCoq1.NW_012149775v1     122724 1030 -   1411461 I
e saiBol1.JH378341           223438 1393 +    515838 M
e otoGar3.GL873550           273036 370 +  18854210 I

a score=139626.000000
s hg38.chr6_GL000254v2_alt  1443732 11 +   4827813 GTTACTATTTG
s panTro5.chr6             30313107 11 + 175400573 GTTACTATTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547567 11 + 173848474 GTTACTATTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     254554 11 +   2037526 GTTACTATTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921546 11 + 122973662 GTTATTATTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800765 11 + 172585720 GTTATTATTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30090252 11 - 170955103 GTTATTATTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     339527 11 +   1495729 GTTATTATTTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     437432 11 -    863181 ATTATTATTTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29589577 11 -  71996105 GTTATTATTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     281518 11 -    735854 GTTATTATTTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     227917 11 -   1829203 GTTATTATTTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30400357 11 + 171630274 GTTATTATTTG
i calJac3.chr4             I 1 C 0
s cebCap1.NW_016107755v1     855176 11 -   1771730 GTTATTATTTG
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496904v1     343739 11 -    383796 GTTATTATTTG
i aotNan1.NW_018496904v1   I 1 C 0
s micMur3.chr6               319084 11 + 123392446 GTTATTATTTG
i micMur3.chr6             I 384 C 0
s proCoq1.NW_012149775v1     123754 11 -   1411461 GTTATTATTTG
i proCoq1.NW_012149775v1   I 1030 C 0
s canFam3.chr35            26311921 11 +  26524999 GTTATTAATTT
i canFam3.chr35            C 0 C 0
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348  5 -     45298 I
e saiBol1.JH378341           223438 1393 +    515838 M
e otoGar3.GL873550           273036 370 +  18854210 I

a score=535403.000000
s hg38.chr6_GL000254v2_alt  1443743 46 +   4827813 TTATAGCCATTTTATCATATATTTTA-TGAGATTTTATCTTTTCAAG
s panTro5.chr6             30313118 46 + 175400573 TTATAGCCATTTTATCATATATTTTA-TGAGATTTTATCTCTTCAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547578 46 + 173848474 TTATAGCCATTTTATCATATATTTTA-TGAGATTTTATCTCTTCAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     254565 46 +   2037526 TTATAGCCATTTTATCATATATTTTA-TGAGATTTTATCTCTTCAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921557 46 + 122973662 TTATGGCCATTTTATCATACATTTTA-TGAGATTTTATCTTTTCAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800776 46 + 172585720 TTATAACCATTTTATCATCTATTTTA-TGAAATTTTATCTTTTCAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30090263 46 - 170955103 TTATAACCATTTTATCATCTATTTTA-TGAAATTTTATCTTTTCAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     339538 46 +   1495729 TTATAATCATTTTATCATCTATTTTA-TGAAATTTTATCTTTTCAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     437443 46 -    863181 TTATAACCATTTTATCATCTATTTTA-TGAAATTTTATCTTTTCAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29589588 46 -  71996105 TTATAACCATTTTATCATCTATTTTA-TGAAATTTTATCTTTTCAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     281529 46 -    735854 TTATAACCATTTTATCATCTATTTTA-TGAAATTTTATCTTTTCAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     227928 46 -   1829203 TTATAACCATTTTATCATCTATTTTA-TGATATTTTATCTTTTCAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30400368 46 + 171630274 TTATAACCATTTTATCATGTATTTTA-TGGGAATTTATCTTTTGAAG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     855187 46 -   1771730 TTATAACCATTTTATCACGTATTTTA-TGGGATTTTATCTTTTCAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     343750 46 -    383796 TTATAACCATTTTATCATGTATTTTA-TGGGAATTTATCTTTTGAAG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               319095 46 + 123392446 TTGTAACCATTCTATCATATATTTTT-TTGGATTTTATCTTTTCAAG
i micMur3.chr6             C 0 I 313
s proCoq1.NW_012149775v1     123765 46 -   1411461 TTATAACCATTCTATCATATATTTTG-TGGGATATTATCTTTTCAAG
i proCoq1.NW_012149775v1   C 0 I 422
s otoGar3.GL873550           273406 43 +  18854210 ttacagccaccatgcc---cagccTA-TGGGATTTTTCTTTTTCAAA
i otoGar3.GL873550         I 370 C 0
s canFam3.chr35            26311932 47 +  26524999 TTATAACTGTTCTGTTGCACATTTCAGGGGGATCTTCTACCTTCAAG
i canFam3.chr35            C 0 C 0
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348  5 -     45298 I
e saiBol1.JH378341           223438 1393 +    515838 M

a score=67535.000000
s hg38.chr6_GL000254v2_alt  1443789 7 +   4827813 TCAAC-TT
s panTro5.chr6             30313164 7 + 175400573 ACAAC-TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547624 7 + 173848474 ACAAC-TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     254611 7 +   2037526 ACAAC-TT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921603 7 + 122973662 ACAAC-TT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800822 7 + 172585720 ACAAC-TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30090309 7 - 170955103 ACAAC-TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     339584 7 +   1495729 ACAAC-TT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     437489 7 -    863181 ACAAC-TT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29589634 7 -  71996105 ACAAC-TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     281575 7 -    735854 ACAAC-TT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     227974 7 -   1829203 ACAAC-TT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30400414 7 + 171630274 ACAAC-TT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     855233 7 -   1771730 ACAAC-TT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     343796 7 -    383796 ACAAC-TT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           273449 8 +  18854210 ATGGCTTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26311979 7 +  26524999 ATGGC-TT
i canFam3.chr35            C 0 I 178
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348 5 -     45298 I
e proCoq1.NW_012149775v1     123811 422 -   1411461 I
e saiBol1.JH378341           223438 1393 +    515838 M

a score=20955.000000
s hg38.chr6_GL000254v2_alt  1443796 2 +   4827813 TG
s panTro5.chr6             30313171 2 + 175400573 TG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547631 2 + 173848474 TG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     254618 2 +   2037526 TG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921610 2 + 122973662 TG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800829 2 + 172585720 TG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30090316 2 - 170955103 TG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     339591 2 +   1495729 TG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     437496 2 -    863181 TG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29589641 2 -  71996105 TG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     281582 2 -    735854 TG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     227981 2 -   1829203 TG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30400421 2 + 171630274 TG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     855240 2 -   1771730 TG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     343803 2 -    383796 TG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           273457 2 +  18854210 TA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348 5 -     45298 I
e proCoq1.NW_012149775v1     123811 422 -   1411461 I
e canFam3.chr35            26311986 178 +  26524999 I
e saiBol1.JH378341           223438 1393 +    515838 M

a score=1739092.000000
s hg38.chr6_GL000254v2_alt  1443798 189 +   4827813 CATGTGCTTTGTGTTGAAAGACC-TGAGTTTGAACATTCATAccatatttggaatatgggaatgtaaccatacctaatttaagcag-ttgtga-gaagcaaatggaataa-----tgtatctgaatccatttaataaactgtTCAACATTGTAAACATGCTGTTAGTAGTATCATAA----------CTGTGTGAAGAGGCAGAAAA
s panTro5.chr6             30313173 189 + 175400573 CATGTGCTTTGTGTTGAAACACC-TGAGtttgaacattcataccatatttggaatatgggaatgtaacgatacctaatttaagcag-ttgtga-gaagcaaatggaataa-----tgtatctgaatccatttaataaactgttcaacattgtaaacatgCTGTTAGTAGTATCATAA----------CTGTGTGAAGAGGCAGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547633 189 + 173848474 CATGTGCTTTGTGTTGAAACACC-TGAGtttgaacattcataccatatttggaatatgggaatgtaacgatacctaatttaagcag-ttgtga-gaagcaaatggaataa-----tgtatctgaatccatttaataaactgttcaacattgtaaacatgCTGTTAGTAGTATCATAA----------CTGTGTGAAGAGGCAGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     254620 189 +   2037526 CATGTGCTTTGTGTTGAAAGACC-TGAGtttgaacattcataccatatttggaatatgggaatgtaacgatacctaatttaaccag-ttgtga-gaagcaaatggaataa-----tgtatctgaatccatttaataaactgttcaacattgtaaacatgCTGTTAGTAGTATCATAA----------CTGTGTGAAGAGGCAGAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921612 186 + 122973662 CATGTTCTTTGGGTTGAAAGACC-CGAGtttgaacattcataccgtatttggaatatgggaatgta--tatacctaatttaagcag-ttgtga-gaagcaaatggaataa-----tgtatctgaatcca-ttattaaactgttcaacgttgtaaacatgCTGTTAGTAGTATCATAA----------TGGTGTGAAGAGGCAGAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30800831 189 + 172585720 CATGTGCTTTGGGTTAAAAGACG-TGAGtttgaacattcataccatatttgaaatatgggaatgtaatgatacctaatttaagcag-tggtga-gaagcaaatggaataa-----tatatctgactccatttagtaaactgttcaacattgtaaacatgCTGTTAGTAATATCATAA----------CTGTGTGAAGAAGCAGAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30090318 189 - 170955103 CATATGCTTTGGGTTAAAAGACG-TGAGTTTGAACATTCATAccatatttgaaatatgggaatgtaatgatacctaattcaagcac-tggtga-gaagcaaatggaataa-----tgtatctgaatccatttagttaactgttcaacattgtaaacatggtgttagtagtatCATAA----------CTGTGTGAAGAGGCAGAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     339593 189 +   1495729 CATATGCTTTGGGTTAAAAGACG-TGAGTTTGAACATTCATAccatatttgaaatatgggaatgtaatgatacctaattcaagcac-tggtga-gaagcaaatggaataa-----tgtatctgaatccatttagttaactgtTCAACATTGTAAACATGGTGTTAGTAGTATCATAA----------CTGTGTGAAGAGGCAGAAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     437498 189 -    863181 CATGTGCTTTGGGTTAAAAGACG-TGAGtttgaacattcataccatatttgaaatacgggaatgtaatgatacctaatttaagcag-tggtga-gaagcaaatggaataa-----tgtatctgaatccatttagtaaactgttcaacattgtaaacatgCTGTTAGTAGTATCATAA----------CTGTGTGAAGAGGCAGAAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29589643 189 -  71996105 CATGTGCTTTGGGTTAAAAGATG-TGAGTTTGAACATTCATACCATATTTGAAATATGGGAATGTAATGATATCTAATTTAAGCAg-tgatga-gaagcaaatggaatca-----tgtatctgaatccatttagtaaactgttcaacattgtaaacatgCTGTTAGTAGTATCATAA----------CTGTGTGAAGAGGCAGAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     281584 189 -    735854 CAtgtgctttgggttaaaacacg-tgagtttgaacattcataccatatttgaaatatgggaatgtaatgatacctaatttaagcag-tggtga-gaagcaaatggaataa-----tgtatctgaatccatttagttaactgtTCAACATTGTCAACATGCTGTTAGTAGTATCATAA----------CTGTGTGAAGAAGCAGAAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     227983 189 -   1829203 CATGTGCTTTGGGTTAAAAGACGTTGActttgaacattcataccatatttgaaatatgggaatgtaatgatacctaatttaagcag-tggtga-gaagcaaat-gaataa-----tgtatctgaatccatttagtaaactgtTCAACATTGTAAACATGCTGTTAGTAGTATCATAA----------CTGCGTGAAGAGGCAGAAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30400423 189 + 171630274 CATGTACTTTGGGTTAAAAGGTC-TGAGTTCAAACATTCATGCCATATTTGGCATGTGTGAATGTAAAGACACCTAATTCAAGCAg-ttgtga-gaagcaaatggaataa-----tgtatctgaatccatttagtaaactgttcagccccgtaaacatgttgttagtactatCACAA----------CTGTGTGAAGGGGCAGTAAA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     855242 194 -   1771730 CATGTGCTTTGGGTTAAAAGACC-TGAGTTCGAACAGTCATGCCATATTTGGCATGTGGGAATGTAATGACACCCAATTCAAGCAG-TTGCGA-GAAGCAAATGGAATGATATACTGTATCTGAATCCATTTAGTGAACTGTTCAGCTCTGTAAACCTGTTGTTAGTACTGTCATAG----------CTGTGTGAAGGGGCAGTAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     343805 189 -    383796 CATGTACTTTGGGTTAAAAGACC-TGAGTTGGAACATTCATGCCATATTTGGCATGtgggaatgtaatgacacctaattcaagcag-ttgtga-gaagcaaatggaataa-----tgtgtctgaatccatttagtaaactgttcagctctgtaaacatgttgttagtactatCATAA----------CTGTGTGAAGGGACAGTAAA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           273459 200 +  18854210 CATGTACTTTGGATTAAAAGACT-AAAGTTCAAACATCTGTGccatatttgggacatggaaacctaatgataattaattcaaagagattttga-ggagtaaatgaaataa-----tgtttctgaaatcacttagtaaactattaagctctgtaaacatgtTGTTAGTGCTATCGTAGTATTCCTAACTTGTGTGGAGGAGCAGAAAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26312164 151 +  26524999 cacccgggctgcccTAAGAGATC-TGATTTGGAGCATCAGTGTCCTATCCGGAGTTTCGGAATGCAGCCATTCCTAATTCAAGAGG-AGGTGGTGAGGTCAGTAGAAGAG-----TGTCTAGGAAACTATTTGGGGGA------------------------------------GAG----------CTG---GGATCTGCAGACAC
i canFam3.chr35            I 178 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e dasNov3.JH580105            17348   5 -     45298 I
e proCoq1.NW_012149775v1     123811 422 -   1411461 I
e saiBol1.JH378341           223438 1393 +    515838 M

a score=452014.000000
s hg38.chr6_GL000254v2_alt  1443987 44 +   4827813 CACTTTGGACTGGGGGATGGAAATC-------TTGGCCAGGGTTCAGTATT
s panTro5.chr6             30313362 44 + 175400573 CACTTTGGACTGGGGGATGGAAATC-------TTGGCCAGGGTTCAGTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547822 44 + 173848474 CACTTTGGACTGGGGGATGGAAATC-------TTGGCCAGGGTTCAGTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     254809 44 +   2037526 CACTTTGGACTGGGGGATGGAAATC-------TTGGCCAGGGTTCAGTATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921798 44 + 122973662 CACTTTGGACTGGGGAATGGAAATC-------TTGGCCAGGGTTCAGTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30801020 51 + 172585720 CACTTTGGACTGGGGAATGGAAATCTAGGCCCTTGGCCAGGGTTCAGTATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30090507 51 - 170955103 CACTTTGGACTGAGGAATGGAAATCTAGGCCCTTGGCCAGGGTTCAGTATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     339782 51 +   1495729 CACTTTGGACTGAGGAATGGAAATCTAGGCCCTTGGCCAGGGTTCAGTATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     437687 51 -    863181 CACTTTGGACTGGGGAATGGAAATCTAGGCCCTTGGCCAGGGTTCAGTATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29589832 51 -  71996105 CACTTTGGACTGGGGAATGGAAATCTAGGCTGTTGGCCAGGGTTCAGTATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     281773 51 -    735854 CACTTTGGACTGGGGAATGGCAATCTAGGCCCTTGGCCAGGGTTCAGTATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     228172 51 -   1829203 CACTTTGGACTGGGTAATGGAAATCTAGGCCCTTGGCCAGGGTTCAATATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30400612 51 + 171630274 CACTTTGGACTGGGAAATGGAAATCTAGGCTCTTGGCAAGGGTTCCCTATT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     855436 51 -   1771730 CACTTTGGACGGGGGAATGGAAATCTAGGCTCTTGGCAAGGGTTCCGTATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     343994 51 -    383796 CACTTCGGACTGGGGAATGGAAATCTAGGTTTTTGGCAAGGGTTCCGTATT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           273659 51 +  18854210 CACCTTGGACTAGAGAATGGAAATGTAGGCCCTTGGTAGTGGTTCAGTACC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26312315 43 +  26524999 CACCCTGGACTGGAGAGTGTACATGTAGGCCCTTG--------TTCTTACC
i canFam3.chr35            C 0 I 3
s dasNov3.JH580105            17353 30 -     45298 CACCCTGGACTAG----------------CCCTTGGCC-----TCACTAAC
i dasNov3.JH580105         I 5 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e proCoq1.NW_012149775v1     123811 422 -   1411461 I
e saiBol1.JH378341           223438 1393 +    515838 M

a score=782083.000000
s hg38.chr6_GL000254v2_alt  1444031 83 +   4827813 CACTTGACTTCCCGGCCATAACATCGAATGAATGGCCAGGACTCTCTTTGAGTAAATGAGCTTCTGAGAGGCTCCTAAAGAGG
s panTro5.chr6             30313406 83 + 175400573 CACTTGACTTCCCGGCCATAACATCGAATGAATGGCCAGGACTCTCTTTGAGTAAATGAGCTTCTGAGAGGCTCCTAAAGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547866 83 + 173848474 CACTTGACTTCCCGGCCATAACATCGAATGAATGGCCAGGACTCTCTTTGAGTAAATGAGCTTCTGAGAGGCTCCTAAAGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     254853 83 +   2037526 CACTTGACTTCCCGGCCATAACATCGAATGAATGGCCAGGACTCTCTTTGAGTAAATGAGCTTCTGAGAGGCTCCTAAAGAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921842 83 + 122973662 CACTTGACCTCCCAGCCATAACATCGAATGAATGGCCAGGACTCTCTTTGAGTAAATGAGCTTCTGAGAGGCTCCTAAAGAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30801071 82 + 172585720 CACTT-ACTTCCCAGTCATAACATTGAACGAATGGCCAGAACACTCTTTCAGTAAATGAGCTTCTGAGAGGCTCCTAAAGAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30090558 83 - 170955103 CACTTGACTTCCCAGTCATAACATTGAATGAATGGCCAGAACACTCTTTCAGTAAATGAGCTTCTGAGAGGCTCCTAAAGAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     339833 83 +   1495729 CACTTGACTTCCCAGTCATAACATTGAATGAATGGCCAGAACACTCTTTCAGTAAATGAGCTTCTGAGAGGCTCCTAAAGAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     437738 83 -    863181 CACTTGACTTCCCAGTCATAACATTGAATGAATGGCCAGAACACTCTTTCAGTAAATGAGCTTCTGAGAGGCTCCTAAAGAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29589883 83 -  71996105 CACTTGACTTCCCAGTCATAACATTGAATGAATGGCCAGAACACTCTTTCAGTAAATGAGCTTCTGAGAGGCTCCTAAAGAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     281824 83 -    735854 CACTTGACTTCCCAGTCATAACATTGAATGAATGGCCAGAACACTCTTTCAGTAAATGAGCTTCTGAGAGGCTTCTAAAGAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     228223 83 -   1829203 CACTTGACTTCCCAGTCATAACACTGAATGAATGGCCAGAACACTCTTTCAGTAAATGAGCTTCTGAGAGGCTCCTAAAGAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30400663 57 + 171630274 CACTTGACTT--------------------------CATGACACTCTTTAAGTAAATGTTCTTCTGAGAGGCTCCTAAAGAGG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     855487 57 -   1771730 CACTTGACTT--------------------------CATGACACTCTTTAAGTAAATGTGCTTCTGAGAGGCTCCTAAAGAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     344045 57 -    383796 CACTTGACTT--------------------------CATGACACTCTTTAAGTAAATGTGCTTCTGAGAGGCTCCTAAAGAGG
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     124233 83 -   1411461 CACTTAACTTCCCAGCCACAACACTGAAGGAACGGCCAGGACACTCTTTAAGTAAATCAACTTCTGAAAGGCTCTAAAAGAGG
i proCoq1.NW_012149775v1   I 422 I 34
s otoGar3.GL873550           273710 83 +  18854210 CACTGAACTTCCCAGCCACAACATAGAATGAATTGTCAGAACAGGTTTTATGTAAATTAGCTTTTGAAAGGCTCTAAAAGAGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26312361 63 +  26524999 CACCTGACCTCCCACT--------------------CAGGATCCTCTCCAGATCTGACAGCTTCAGGAAAGCTAATGAGTGGG
i canFam3.chr35            I 3 C 0
s dasNov3.JH580105            17383 64 -     45298 TGCTTGGCTTCCCAGCCAC-ACACTG---TGATGGCCAGAA---------GGTGTATCAACTTCTGAAGGGTC------GGGG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e saiBol1.JH378341           223438 1393 +    515838 M

a score=267658.000000
s hg38.chr6_GL000254v2_alt  1444114 34 +   4827813 CGACCCCCATC----CCTC---ACGGCTGAGAAGAGTGTGA
s panTro5.chr6             30313489 34 + 175400573 CGACCCCCATC----CCTC---ACGGCTGAGAAGAGTGTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547949 34 + 173848474 CGACCCCCATC----CCTC---ACGGCTGAGAAGAGTGTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     254936 34 +   2037526 CGACCCCCATC----CCTC---ACGGCTGAGAAGAGTGTGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921925 34 + 122973662 GGACCCCTATC----CCTC---ACGGCTGAGAAGACTGTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30801153 34 + 172585720 CGACCCCTATC----CCTC---ATGGCTGAGAAGACTGTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30090641 34 - 170955103 CGACCCCTATC----CCTC---ATGGCTGAGAAGACTGTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     339916 34 +   1495729 CGACCCCTATC----CCTC---ATGGCTGAGAAGACTGTAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     437821 34 -    863181 CGACCCCTATC----CCTC---ATGGCAGAGAAGACTGTGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29589966 34 -  71996105 CGACCCCTATC----CCTC---ATGGCTGAGAAGACTGTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     281907 34 -    735854 TGAGCCCTATC----CCTC---ATGGCTGAGAAGACTGTGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     228306 34 -   1829203 CGACCCCTATC----CCTC---ATGGCTGAGAAGACTGTGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30400720 34 + 171630274 GGATACCTATC----CCTC---ACAGCTGAGTAGAGTGTGG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     855544 34 -   1771730 GCACACCTATC----CCTC---ACAGCTGAGTAGAGTGTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     344102 34 -    383796 GGACACCTATC----CCTC---ACAGCTGAGTAGAGTGTGG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           273793 30 +  18854210 AGGCCCCTCTC----CCCCCAGATGGCCAAGAAG-------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26312424 34 +  26524999 ----CCCCGGCGGGTGCTC---TGGGTGGAAGAGAGGGTGC
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            17447 34 -     45298 -GTCCCCTCCA----CCTCC--GGGGCCCAAGCTGCTGCCG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e proCoq1.NW_012149775v1     124316 34 -   1411461 I
e saiBol1.JH378341           223438 1393 +    515838 M

a score=854963.000000
s hg38.chr6_GL000254v2_alt  1444148 74 +   4827813 TCATCGTTTAAGG-----TTAAGGTCCAGGTTGGAAGACCTCCCCAAATTTAAACCTTGCTACAAAGTATTCTTTCATT
s panTro5.chr6             30313523 74 + 175400573 TCATCGTTCAAGG-----TTAAGGTCCAGGTTGGAAGACCTCCCCAAATTTAAACCTTGCTACAAAGTATTCTTTCATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30547983 74 + 173848474 TCATCGTTCAAGG-----TTAAGGTCCAGGTTGGAAGACCTCCCCAAATTTAAACCTTGCTACAAAGTATTCTTTCATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     254970 74 +   2037526 TCATCGTTCAAGG-----TTAAGGTCCAGGTTGGAAGACCTCCCCAAATTTAAACCTTGCTACAAAGTACTCTTTCATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74921959 74 + 122973662 TCATAGTTCAAGG-----TTAAGGTCCAGGTTGGAAGACCTCTCCAAATTTAAACCTTGCTACAAAGTATTCTTTCATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30801187 74 + 172585720 TCATAGTTCAAGG-----TTAAGATCCAGGTTGGAAGACTTTCCCAAATTTAAACCTTGCTACAAAGTATTCTTTCATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30090675 74 - 170955103 TCATAGTTCAAGG-----TTAAGATCCAGGTTGGAAGACCTCCCCAAATTTAAACCTTGCTACAAAGTATTCTTTCATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     339950 74 +   1495729 TCATAGTTCAAGG-----TTAAGATCCAGGTTGGAAGACCTCCCCAAATTTAAACCTTGCTACAAAGTATTCTTTCATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     437855 74 -    863181 TCATAGTTCAAGG-----TTAAGATCCAGGTTGGAAGACCTCCCCAAATTTAAACCTTGCTACAAAGTATTCTTTCATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29590000 74 -  71996105 TCATAGTTCAAGG-----TTAAGATCCAGGTTGGAAGACCTCCCCAAATTTAAACCTTGCTACAAAGTATTCTTTCATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     281941 74 -    735854 TCATAGTTCAAGG-----TTAAGATCCAGGTTGGAAGACCTCCCCAGATTTAAACCTTGCTACAAAGTATTATTTCATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     228340 74 -   1829203 TCATAGTTCAAGG-----TGAAGATCCAGGTTGGAAGACCTCCCCAAATTTAAACCTTGCTACAAAGTATTCTTTCATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30400754 79 + 171630274 TCATAGTTCAAGGTTAAATTAAGGTCCAGGATGGAAGACCTTCCCAAATTTAAACCTTGCCACAGAGTATTCTTTCATT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     855578 79 -   1771730 TCATAGTTCAAGGTTAAATTAAGGTCCAGGTTGGAAGACCTTCCCAAATTTAAACCTTGCCACAAAGTATTCTTTCATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     344136 79 -    383796 TCATAGTTCAAGGTTAAATTAAGGTCCAGGTTGGAAGACCTTCCCAAATTTAAACCTTGCCACAAAGTATTCTTTCATT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     124350 74 -   1411461 TCATAGTTCAAGG-----TTAAGGTCCAGGTTGGAAGACCTTCCCTAATTTAGACCTCGCCACAAAGTATCCCTTCATt
i proCoq1.NW_012149775v1   I 34 I 8
s otoGar3.GL873550           273823 62 +  18854210 ------------G-----TTAAGGTCCGAGTTGGAAAATCTCCACAAATTTAGGCTTTGTCACAAAGTATTCCTTCATT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26312458 51 +  26524999 TCAGAGTTGTTAG-----TAGTGGACCAGGGTG-------TCCCCAGATTGAAACTTGACCAC----------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            17481 72 -     45298 -CACAGGTGAAGG-----CTCAGGTCCAGGTTAGGAGACGTCGCCCAGGTTAAA-GTGGCCACGGCGTACCCCTTCGTG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e saiBol1.JH378341           223438 1393 +    515838 M

a score=289311.000000
s hg38.chr6_GL000254v2_alt  1444222 38 +   4827813 --TACTTTGAACCCTTCCTTCATTTACATCCCTTTAGGAA
s panTro5.chr6             30313597 38 + 175400573 --TACTTTGAACCCTTCCTTCATTTACATCCCTTTAGGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30548057 38 + 173848474 --TACTTTGAACCCTTCCTTCATTTACATCCCTTTAGGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     255044 38 +   2037526 --TACTTTGAACCCTTCCTTCATTTACATCCCTTTAGGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74922033 38 + 122973662 --TACTTTGAACCCTTCCTTCATTTACATCCCTTTAGGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30801261 38 + 172585720 --TATGTTGAACCCTTCCTTCATTTACATTCCTTTAGGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30090749 38 - 170955103 --TATGTTGAACCCTTCCTTCATTTACATCCCTTTAGGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     340024 38 +   1495729 --TATGTTGAACCCTTCCTTCATTTACATCCCTTTAGGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     437929 38 -    863181 --TATGTTGAACCCTTCCTTCATTTACATCCCTTTAGGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29590074 38 -  71996105 --TATGTTGAACCCTTCCTTCATTTACATCCCTTTAGGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     282015 38 -    735854 --TATGTTGAACCTTTCCTTCATTTACATCCCTTTAGGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     228414 38 -   1829203 --TATGTTGAACCCTTCCTTCATTTACATCCCTTTAGGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30400833 38 + 171630274 --TACTTTGAATCCTTCCTTCATTTAAATCCCTTTAGGAA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     855657 38 -   1771730 --TACTTTGAATCCTTCCTTCATTTAAATCCCTTTAGGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     344215 38 -    383796 --TACTTTGAATCCTTCCTTCATTTAAATCCCTTTAGGAA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           273885 11 +  18854210 --TACCGTGAACC---------------------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26312509  4 +  26524999 ----------------------------------TGGG--
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            17553 11 -     45298 TGTGTGGTGAG-----------------------------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e proCoq1.NW_012149775v1     124424  8 -   1411461 I
e saiBol1.JH378341           223438 1393 +    515838 M

a score=1127332.000000
s hg38.chr6_GL000254v2_alt  1444260 118 +   4827813 CCAGGCCCTGTAGTGCTCAAGGAGGGTGGGAGAGTGAAACGAAAAGGAGT-GAGATGCTGCTTCTGTTCTCGAGGACT--TCACAGTCAACTTGCGGTAAGTGCTGC-AGGGAGATGGCTGT
s panTro5.chr6             30313635 118 + 175400573 CCAGGACCTGTAGTGCTCAAGGAGGGTGGGAGAGTGAAACGAAAAGGAGT-GAGATGCTGCTTCCGTTCTCGAGGACT--TCACAGTCAACTTGCGGTAAGTGCTGC-AGGGAGATGGCTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30548095 118 + 173848474 CCAGGACCTGTAGTGCTCAAGGAGGGTGGGAGAGTGAAACGAAAAGGAGT-GAGATGCTGCTTCCGTTCTCGAGGACT--TCACAGTCAACTTGCGGTAAGTGCTGC-AGGGAGATGGCTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     255082 118 +   2037526 CCAGGCCCTGTAGTGCTCAAGGAGGGTGGGAGAGTgaaacgaaaaggagt-gagatgctgcttctgttctcgaggact--tcacagtcAACTTGCGATAAGTGCTGC-AGGGAGATGGCTGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74922071 118 + 122973662 CCAGGCCCTGTAGTGCTCAAGGAGGGTGGGAGAGTgaaacgaaaatgagt-gagatgctgcttctgttctcgaagact--tcacagtcAACTTGCGGTAAGTGCTGC-AGGGAGATGGCTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30801299 117 + 172585720 CCAGGCCCTGTACTGCTCAAGGAAGGTGGGGGAGTGGAATGAAAGTGAGT-GAGATGCTACTTCTGTTCTCCAGGACC--TCACAGTCAACTTGCAGGAAGTGCTGC-AGGGAGATGGCTG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30090787 117 - 170955103 CCAGGCCCTGTACTGCTCAAGGAGGGTGGGGGAGTGGAATGAAAGTGAGT-GAGATGCTACTTCTGTTCTCCAGGACC--TCACAGTCAACTTGCAGGAAGTGCTGC-AGGGAGATGGCTG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     340062 118 +   1495729 CCAGGCCCTGTACTGCTCAAGGAGGGTGGGGGAGTGGAATGAAAGTGAGT-GAGATGCTACTTCTGTTCTCCAGGACC--TCACGGTCAACTTGCAGGAAGTGCTGC-AGGGAGATGGCTGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     437967 118 -    863181 CCAGGCCCTGTACTGCTCAAGGAGGGTGGGGGAGTGGAatgaaagtgagt-gagatgctacttctgttctccaggacc--tcacagtcAACTTGCAGGAAGTGCTGC-AGGGAGATGGCTGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29590112 118 -  71996105 CCAGGCCCTGTACTGCTCAAGGAGGGTGGGGGAGTGGAATGAAAGTGAGT-GAGATGCTACTTCTGTTCTCCAGGACC--TCACAGTCAACTTGCAGGAAGTGCTGC-AAGGAGATGGCTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     282053 118 -    735854 CCAGGCCCTGTACTGCTCAAGGAGGGTGGGGGAGTGGAatgaaagtgagt-gagatgctacttctgttctccaggacc--tcacagtcAACTTGCAGGAAGTGCTGC-AGGGAGATGGCTGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     228452 118 -   1829203 CCAGGCCCTGTACTGCTCAAGGAGGGTGGGGGAGTGGAATGAAAGTAAGT-GAGATGCTACTTCTGTTCTCCAGGACC--TCACAGTCAACTTGCAGGAAGTGCTGC-AGGGAGATGGCTGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30400871 116 + 171630274 CCAGGCCCTGTACTGCTCAAGGAGGGTGGGAGAGTGACAGGAAAATGAGTAGGGAGGCTGCTTCTGTTCTCCGGGACT--TCACAGTCAACCTGCAGTAAG---TGC-AGGGAGATGGCAGT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     855695 118 -   1771730 CCAGGCTCTGTACTGCTCAAGGAGGGTGGGAGAGTgacacgaaaatgagtaaagacactgcttctgttct-caggact--tcacagtcGACTTGCAGTAAGTGCTGC-AGGGAGATGGCTGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     344253 119 -    383796 CCAGGCCCTGTACTGCTCAAGGAGGGTGGGAGAGTgacacgaaaatgagtaaagatgctgcttctgttctcgaggact--taacagtcAACTTGCAGTAAGTGCTGC-AGGGAGATGGCTGT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     124432 117 -   1411461 ccaggccctgtactgggcaaggaaggtgggagagtgaaacgaaaaggagt-aagacaccacttctgtcctcaaagact--tcacagtcta-ctgTGGTGGGTG-TGCGAGGGAGCTGGCTGT
i proCoq1.NW_012149775v1   I 8 I 1
s otoGar3.GL873550           273896 105 +  18854210 --AGGCCCTGTACAGGGCAGGGAAGGTGGGAGAGTGAAAAGAAAAGGAGT-AAGATCCTGCTTCTG---TCAGCCCCT--TC---------CTGTGATTGGTGCTGTGACAGGACTGGCTGT
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26312513 102 +  26524999 CCAGGTGCT------CTGGAGGAGGCTAGGGA---GGAAACCACAGGAGG-AAAGCCCTGCTTCTG----CCTGGGCTAGTCTCAGCCT-CCTGTGGGCAGTGCTCA-CAGGAGCTGG----
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            17564  92 -     45298 CCAGGCACTGCGGGGGCC-CGGAGGGTGGGCG--CCAGCCCAGGGTGAGC-CAGG-GCTGCCTCTG--CCCCAGGGGC--TGGCTG------TGCTGGAGCATCTGC---------------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e saiBol1.JH378341           223438 1393 +    515838 M

a score=1150536.000000
s hg38.chr6_GL000254v2_alt  1444378 104 +   4827813 AGTGGCTTTGGGAGTGTGCACACTTTTccaacagaaagtaccaggaaccctgcctggggaaggcttc----------------------------------------------------------------------------ccggaggaggtgaggtggagctggtccacgaaaattg
s panTro5.chr6             30313753 104 + 175400573 AGTGGCTTTGGGAGTGTGCACACTTTTccaacagaaagtaccaggaaccctgcctggggagggcttc----------------------------------------------------------------------------ctggaggaggtgaggtggagctggtccacgaaaattg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30548213 104 + 173848474 AGTGGCTTTGGGAGTGTGCACACTTTTccaacagaaagtaccaggaaccctgcctggggagggcttc----------------------------------------------------------------------------ctggaggaggtgaggtggagctggtccacgaaaattg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     255200 104 +   2037526 AGTGGCTTTGGGAGTGTGCACACTTTTccaacagaaggtaccaggaaccccgcctggggagggcttc----------------------------------------------------------------------------ctggaggaggtgaggtggagctggtccacgaaaattg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74922189 104 + 122973662 AGTGGCTTTGGGAGTGTGCACACTTTTCCAACAGAAAGAACCAGGAaccctgcctggggaaggcttc----------------------------------------------------------------------------ctggaggaggtgaggtggagctggtccacgaaaattg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30801416  96 + 172585720 --------TGGGAATGTGCACACTTTTCCAACAGAAAGAACCAGGAACGCTGCATGgggaaggcttc----------------------------------------------------------------------------ctggaggaggtgaggtggagctggtccacgaaaattg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30090904  96 - 170955103 --------TGGGAATGTGCACACTTTTCCAACAGAAAGAACCAGGAACGCTGCATGgggaaggcttc----------------------------------------------------------------------------ctggaggaggtgaggtggagctggtccacgaaaattg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     340180 104 +   1495729 AGTGGCTTTGGGAATGTGCACACTTTTCCAACAGAAAGAACCAGGAACGCTGCATGTggaaggcttc----------------------------------------------------------------------------ctggaggaggtgaggtggagctggtccacgaaaattg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     438085 104 -    863181 AGTGGCTTTGGGAATGTGTACACTTTTCCAACAGAAAGAACCAGGAATGCTGCGTGgggaaggcttc----------------------------------------------------------------------------ctggaggaggtgaggtggagctggttcacgaaaattg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29590230 104 -  71996105 AGTGGCTTTGGGAATGTGCACACTTTTCCAACAGAAAGAACCAGGAACGCTGCGTGgggaaggcttc----------------------------------------------------------------------------ctggaggaggtgaggtggagctggtccatgaaaattg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     282171 104 -    735854 AGTGGCTTTGGGAATGTGCACACTTTTCCAACAGAAAGAACCAGGAACGCTGCGTGgggaaggcttc----------------------------------------------------------------------------ctggaggaggtgaggtggagctggtccatgaaaattg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     228570 104 -   1829203 AGTGGCTTTGGGAATGTGCACACTTTTCCAACAGAAAGAACCAGGAACGCCGCGTGgggaaggcttc----------------------------------------------------------------------------ctggaggaggtgaggtggagctcgtccacgaaaattg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30400987 101 + 171630274 AGAGGCTTTGGGAGTGTGCACAC--TTCCGACAAGAGGAGTCAGGAGCCCTTtc-agggaaggcttc----------------------------------------------------------------------------ctggaggaggtgaggtggagctggtccacgaaaattg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           224831 139 +    515838 AGTGGCTTTGGGAGTGTGCACGC--TTCCAACAAGAAGAGTCAGGAGCCCTgcc-agggaaggcttc--------------------------------------ctggaggaggtgaGGTGGAGCCTgccagggaaggctttctggaggaggtgaggtggagctggtccacaaaaattg
i saiBol1.JH378341         M 1393 C 0
s cebCap1.NW_016107755v1     855813 139 -   1771730 AGTGGCTTTGGGGGTGTGCACAC--TTCCAACAAGAAGAGTCAGGACCCCTgcc-agggaaggcttc--------------------------------------ctggaggaggtgaggtggagcctgccagggaaggcttcctggaggaggcgaggtggagctagtccacgaaaattg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     344372 177 -    383796 AGTGGCTTTGGGAGTGTGCACAC--TTCCAACAAGAAGAGTCAGGAGCCCTgcc-agggaaggcttcctggaggaggtgaGGTGGAGCCTACcagggaaggcttcctggaggaggtgaggtggagcctgccagggaaggcttcctggaggaggcgaggtggagctggtccacgaaaattg
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     124550  81 -   1411461 AGCGGCTTTGGGAGTGTGGACAC--TTCCTACAGGAACAGCCAGGAACCCTGCCTGG-------------------------------------------------------------------------------------------------GGGGTGGAGCTGGTCCACGAAAATGG
i proCoq1.NW_012149775v1   I 1 C 0
s otoGar3.GL873550           274002 102 +  18854210 AATGGCTTTGGGAGTATGCACAC--TTTCCACAGGAAGAGCCAGGAACCCTGCCTGGGCATGGCTTC----------------------------------------------------------------------------CAGGAGAGGTTGTGGTGGAGCTGATCCATGAAAATTA
i otoGar3.GL873550         I 1 I 288
s canFam3.chr35            26312615  91 +  26524999 ----------AGGGTGTGGGCCC--TCCTCACAGGAGTAGCTGGGAAGCCTGCTTGGGGAA-GCGTC----------------------------------------------------------------------------CTGGAGGAGATGTGCTGAAGCCAGCCCACTGAATTTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            17656  95 -     45298 CGTGGCTTCGGGAGTGCACTTGC--TTCCTAGAGGAAGAGCCAGGGAGCCT-----GGGCGGGCTTC----------------------------------------------------------------------------CAGGAGGAGGCGGCCCCGGGC--GTCCACGCCAACTG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I

a score=625633.000000
s hg38.chr6_GL000254v2_alt  1444482 45 +   4827813 agtgggatttccaagACATCAGTCTTTCGCGGG-AAAAGAGAAATT
s panTro5.chr6             30313857 45 + 175400573 agtgggatttccaagACATCAGTCTTTCGCGGG-AAAAGAGAAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30548317 45 + 173848474 agtgggatttccaagACATCAGTCTTTCGCGGG-AAAAGAGAAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     255304 44 +   2037526 agtgggatttccaagACATCAGTCTTTCGC-GG-AAAAGAGAAATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74922293 45 + 122973662 agtgggatttccaagACATCAGTCTTTTGCGGG-AAAAGAGAAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30801512 45 + 172585720 agtgggatttCCAAGACATCAGTCTTTTGCGGG-AAAAGAGAAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091000 45 - 170955103 agtgggatttccaagACATCAGTCTTTTGCGGG-AAAAGAGAAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     340284 45 +   1495729 agtgggatttCCAAGACATCAGTCTTTTGGGGG-AAAAGAGAAATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     438189 45 -    863181 agtgggatttCCAAGACATCAGTCTTTTGCGGG-AAAAGAGAAATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29590334 44 -  71996105 agtgggatttccaagACATCAGTCTTTT-GGGG-AAAAGATAAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     282275 45 -    735854 agtgggatttCCAAGACATCAGTCTTTTGGGGG-AAAAGAGAAATT
i manLeu1.NW_012107142v1   C 0 M 1170
s colAng1.NW_012115577v1     228674 45 -   1829203 agtgggatttCCAAGACATCAGTCTTTTGCGGG-AAAAGAGAAATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30401088 45 + 171630274 agtgggatttccaagACATCAATCTTTTGCGGG-AAAAGAGAAAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           224970 46 +    515838 agtgggGTTTCCAAGACACCAGTCTTTTGCGGGAAAAAGAGAAATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     855952 45 -   1771730 agtgggatttCCAAGACATCAGTCTTTTGCGGG-AAAAGAGAAATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     344549 45 -    383796 agtgggatttCCAAGACATCAGTCTTTGGCGGG-AAAAGAGAAATT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     124631 44 -   1411461 AATGGGGTTTCCAAGACATTAGTCTTTTGT-GG-GAAAGAGGAATT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           274392 44 +  18854210 AGTGGGATTTCTAAGACATCGTTCTTTTGT-GG-AAAAGAGGAATT
i otoGar3.GL873550         I 288 C 0
s canFam3.chr35            26312706 44 +  26524999 AGTGAGATCTCTAAGGCATCACTGCTTTGT-GG-GAAAGAGACATG
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            17751 43 -     45298 AGTGGGATTCCCCTGACGTCAGTCTTCTGC--T-GAAAGAGGAACT
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I

a score=1688972.000000
s hg38.chr6_GL000254v2_alt  1444527 152 +   4827813 AGGGCATGGTTTTAATTTAGTAAATATTTATTAATCAAGTACCCCATTCTAGGGTCCGTGCTAAGTGTCTGGG---GTTGGTAGAGTCAGGAAGTATAAAATCAACTTAAGACATTTGG-----GAAAGATCTCCCTTTGTAGTAAGGAAGTTGAATCTG
s panTro5.chr6             30313902 152 + 175400573 AGGGCATGGTTTTAATTTAGTAAATATTTATTAATCAAGTACCCCATTCTAGGGTCCGTGCTAAGTGTCTGGG---GTTGGTAGAGTCAGGAAGTATAAAATCAACTTAAGACATTTGG-----GAAAGATCTCCCTTTGTAGTAAGGAAGTTGAATCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30548362 152 + 173848474 AGGGCATGGTTTTAATTTAGTAAATATTTATTAATCAAGTACCCCATTCTAGGGTCCGTGCTAAGTGTCTGGG---GTTGGTAGAGTCAGGAAGTATAAAATCAACTTAAGACATTTGG-----GAAAGATCTCCCTTTGTAGTAAGGAAGTTGAATCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     255348 152 +   2037526 AGGGCATGGTTTTAATTTAGTAAATATTTATTAATCAAGTACCCCATTCTAGGGTCCGTGCTAAGTGTCAGGG---ATTGGTAGAGTCAGGAAGTATAAAATCACCTTAAGACATTTGG-----GAAAGATCTCCCTTTGTAGTAAGGAAGTTGAATTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74922338 151 + 122973662 AGGGCATGGTTttaatttagtaaatatttattaatcaagtaccccattctagggtctgtgctaagtgtcaggg---GTTGGTAGAGCCA-GAAGTATAAAATCAACTTAAGACAGTTGG-----GAAAGATCTCCCTTTGTAGTAAGGAGGTTGAATCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30801557 152 + 172585720 AGGGCATGGTTttaatttagtaaatatttattaatcaagtaccccgttctagggtctgtgctaagtgtcaggg---gttggtagagccaggaagcataaaaTCAACTTAAGACACTTGG-----GAAAGATCTCCCTTTGTAGTAAGGAAGTTAAATCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091045 152 - 170955103 AGGGCATGGTTttaatttagtaaatatttattaatcaagtaccccgttctagggtctgtgctaagtgtcaggg---GTTGGTAGAGCCAGGAAGCATAAAATCAACTTAAGACACTTGG-----GAAAGATCTCCCTTTGTAGTAAGGAAGTTAAATCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     340329 152 +   1495729 AGGGCATGGTTTTAATTTAGTAAATATTTATTAATCAAGTACCCCGTTCTAGGGTCTGTGCTAAGTGTCAGGG---GTTGGTAGAGCCAGGAAGCATAAAATCAACTTAAGACACTTGG-----GAAAGATCTCCCTTTGTAGTAAGGAAGTTAAATCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     438234 152 -    863181 AGGGCATGGTTTTAATTTAGTAAATATTTATTAATCAAGTACCCCATTCTAGGGTCTATGCTAAGTGTCAGGG---GTTGGTAGAGCCAGGAAGCATAAAATCAACTTAAGACACTTGG-----GAAAGATCTCCCTTTGTAGTGAGGAAGTTAAATATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29590378 152 -  71996105 AGGGCATGGTTTTAATTTAGTAAATATTTATTAATCAAGTACCCCATTCTAGGGTCTATGCTAAGTGTCAGGG---GTTGGTAGAGCCAGGAAGTATAAAATCAACTTAAGATACTTGG-----GAAAGATCTCCCTTTGTAGTGAGGAAGTTAAATCTG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     228719 152 -   1829203 AGGGCATGGTTTTAATTTAGTAAATATTTATTAATCAAGTACCCCATTCTAGGGTCTATGCTAAGTGTCAGGG---GTTGGTAGAGCCAGGAAGTATAAAATCAACTTAAGACACTTGG-----GAAAGATCTCCCTTTGTAGTAAGGAAGTTAAATCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30401133 152 + 171630274 AACACATGGTTttaatttagtaaatatttattaatcaactaccccattctagggtttgtgctaagtgtcaggg---GTTGGTGGAGCCAGG-AGTATAAAATCAACTTAAGACAGTGGAG----GAAAGATCTCCCTTTCTAGTGAGGAAGTTAAATCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           225016 157 +    515838 AACACATGGttttaatttagtaaatatttatttaaaaaCTACCCCATTCCAGGGTTTGTGCTAAGTGTCAGGG---GTTGGTAGAGCCAGGAAGTATAAAATGATCTTAAGACAGTGGAGTGGAGAAAGATCTCCCTTTCCAGCAAGGAAGTTAAATCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     855997 152 -   1771730 AACACATGGTTTTAATTTAGTAAATATTTATTTAAAAACTACCCCATTCCAGGGTTCGTGCTAAGTGTCAGGG---GTTGGTAGAGCCAGGAAGTATAAAATCAACTTAAAACAGTGGA-----GAAAGATCTCCCTTTCTAGTAAGGAAGTTAAATCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     344594 152 -    383796 AACACATGGTTTTAATTTAGTAAATACTTATTTAAAAACTACCCCATTCTAGGGTTTGTGCTAAGTGTCAGGG---GTTGGTAGAGTCAGAAAGTATAAAATCAACTTAAGACAGTGAA-----GAAAGATCGCCCTTTCTAGTAAGGAAGTTAAATCTG
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     124675 152 -   1411461 AAGGGATGGTGTCAATTTAGTAAATACCTATTAATCAATTACCCAATTCTAGGGTCTGTGCTGAGTGTCAGGG---GTTGGGAGAGCAAGGAAGTGTAAAATCAACGTGAGACAGTTGG-----CAAAGAGCTCCGTTGCTAGTAAGGAAGCTGAATCCG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           274436 154 +  18854210 AGGGAATTGTTTCAATTTAGTAAATAATTATTAATTAACTACCACTTTCTAGAGTCTGTGCTAAGTGTCAGGGTCTGTTGGAAGAGCAA-GAAGTATAAAATCAAAATAAGACGGTGGG-----GAAAGAGCTCCTTTTCTAGTAAGGAATTTAGATCTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26312750 130 +  26524999 CTGGGATGGCTTCAATGTAGTAAATATTTA-TAGTTGACCACC-CATCCTAGAGTCTGTGCCAGGGGTCAGGG---GTCAAGAGAG------GGGACACCATCCA-------------------GGAACTTCTCCGTCTGCACTGAGGAAACTAAATCTG
i canFam3.chr35            C 0 I 82
s dasNov3.JH580105            17794 128 -     45298 -GGGGACAGTTTTCATTGAGTAAATATTTA---AGCAACTACCTCATTCCGGGGT-----------GTCAGGA---GT-----GGGGCGGGGCGTATGAAGTCAACACCGCCC---TCG-----CACAGGGCTCCCTTTCCAGCCAGGAGACC-AATCTG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e manLeu1.NW_012107142v1     282320 1170 -    735854 M

a score=167113.000000
s hg38.chr6_GL000254v2_alt  1444679 17 +   4827813 TACACAATGAAAGGAAA
s panTro5.chr6             30314054 17 + 175400573 TACACAATGAAAGGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30548514 17 + 173848474 TACACAATGAAAGGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     255500 17 +   2037526 TACACAATGAAAGGAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74922489 17 + 122973662 CCCACAATGAAAGGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30801709 17 + 172585720 TATACAATGAAAAGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091197 17 - 170955103 TATACAATGAAAAGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     340481 17 +   1495729 TATACAATGAAAAGAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     438386 17 -    863181 TACACAATGAAAGGAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29590530 17 -  71996105 TACACAATGAAAGGAAA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     228871 17 -   1829203 TATACAATGAAAGGAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30401285 17 + 171630274 TACACAATGAAAGGAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           225173 17 +    515838 TACACAATGAAAGGAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     856149 17 -   1771730 TACACAATGAAAGGAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     344746 17 -    383796 TACACAATGAAAGGAAA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     124827 17 -   1411461 TATTCAATTAAAGGAAG
i proCoq1.NW_012149775v1   C 0 I 31
s otoGar3.GL873550           274590 17 +  18854210 TATACAATTACATGAAA
i otoGar3.GL873550         C 0 I 3
s dasNov3.JH580105            17922  7 -     45298 CCTACAG----------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e canFam3.chr35            26312880 82 +  26524999 I
e manLeu1.NW_012107142v1     282320 1170 -    735854 M

a score=329104.000000
s hg38.chr6_GL000254v2_alt  1444696 35 +   4827813 CAAGGTAAAAGGCGCGAAGTCCATGACCATGACGA
s panTro5.chr6             30314071 35 + 175400573 CAAGGTAAAAGGCGCGAAGTCCATGACCATGACGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30548531 35 + 173848474 CAAGGTAAAAGGCGCGAAGTCCATGACCATGACGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     255517 35 +   2037526 CAAGGTAAAAGGCGCGAAGTCCTTGACCATGACGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74922506 35 + 122973662 CAAGGTAAAAGGCGCGAAGTCCATGACCATGACGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30801726 35 + 172585720 CAAGGCAAAAGGCGCGAAGTCCATGACCATGACGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091214 35 - 170955103 CAAGGCAAAAGGCGCGAAGTCCATGACCATGACGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     340498 35 +   1495729 CAAGGCAAAAGGCGCGAAGTCCATGACCATGACGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     438403 35 -    863181 CAAGGCAAAAGGCGCGAAGTCCATGACCATGACGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29590547 35 -  71996105 CAAGGCAAAAGGCGCGAAGTCCATGACCATGACGA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     228888 35 -   1829203 CAAGGCAAAAGGCGCGAAGTCCATGACCATGACGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30401302 35 + 171630274 CAAGATAAAGGGCGCGAAGTCCATGACCTTGACGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           225190 35 +    515838 CAAGATAAAAGGCGCGAAGCCCATGACCTTGACGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     856166 35 -   1771730 CAAGATAAAAGGCGCGAAGTCCATGACCTTGACGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     344763 35 -    383796 CAAGATAAAAGGCGCGAAGTCCATGACCTTGACGA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           274610 29 +  18854210 CACGGTAAGATATATGCAGTCCATGACTG------
i otoGar3.GL873550         I 3 C 0
s dasNov3.JH580105            17929 13 -     45298 ----------------------GTGACCCTGGCCA
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e proCoq1.NW_012149775v1     124844 31 -   1411461 I
e canFam3.chr35            26312880 82 +  26524999 I
e manLeu1.NW_012107142v1     282320 1170 -    735854 M

a score=535744.000000
s hg38.chr6_GL000254v2_alt  1444731 55 +   4827813 GGGCTGTGAGAACTGT-AAATAGGGA-TTTGG----GCAGTCCCGGC-TGATTCTGAATAAA
s panTro5.chr6             30314106 56 + 175400573 GGGCTGTGAGAACTGT-AAATAGGGAATTTGG----GCAGTCCCGGC-TGATTCTGAATAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30548566 56 + 173848474 GGGCTGTGAGAACTGT-AAATAGGGAATTTGG----GCAGTCCCGGC-TGATTCTGAATAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     255552 56 +   2037526 GGGCTGTGAGAACTGT-AAATAGGGAATTTGG----GCAGTCCCGGC-TGATTCTGAATAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74922541 56 + 122973662 GGGCTGTGAGAACTGT-AAATAGGGAATTTGG----GCAGTCCCGGC-TGATTCTGAATAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30801761 56 + 172585720 GGGCTGTGAGAATTGT-AAATAGGGAATTTGG----GCGGTCCTGGC-TGATTCTGAATGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091249 56 - 170955103 GGGCTGTGAGAATTGT-AAATAGGGAATTTGG----GCGGTCCTGGC-TGATTCTGAACGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     340533 56 +   1495729 GGGCTGTGAGAATTGT-AAATAGGGAATTTGG----GCGGTCCTGGC-TGATTCTGAATCAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     438438 56 -    863181 GGGCTGTGAGAATTGT-AAACAGGGAATTTGG----GCGGTCCTGGC-TGATTCTGAATGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29590582 56 -  71996105 GGGCTGTGAGAATTGT-AAACAGGGAATTTGG----GCGGTCCTGGC-TGATTCTGAATGAA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     228923 55 -   1829203 GGGCTGTGAGAATTGT-AAACAGGGAATTTGG----GCGGTCCTGGC-TGA-TCTGAATGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30401337 55 + 171630274 GGGCTGTGAGAACTGT-AAATAGGGAATTTGG----GCAGTCCCGGG-TGA-TCTGAATAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           225225 55 +    515838 GGGCTGTGAGAACTGT-AAATAGGGAATTTGG----GCAGTCCCAGG-TGA-TCTGAATAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     856201 55 -   1771730 GGGCTGTGAGAACTGT-AAATAGAGAATTTGG----GCAGTCCCGGG-TGA-TCTGAATAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     344798 55 -    383796 GGGCTGTGAGACCTGT-AAACAGGGAATTTGG----GCAGTCCCGGG-TGA-TCTGAATAAA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     124875 57 -   1411461 GGGCTTCGAGAACTGG-AAATAGGGAATTTGG----ATTGTCCCGGGGTGATTCTGAATACA
i proCoq1.NW_012149775v1   I 31 C 0
s otoGar3.GL873550           274639 50 +  18854210 GCACTTTGGGAAGT--------GGGAATTTGG----ACAGTCCTGGGATGATTCTGAATAAA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            17942 60 -     45298 GGGGTCTGAGTGCTGCGAAATAGCGAATTGGACTTCGCGCCCCTTTG-GGGTTGGGGTTGG-
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58065009 1646 -  94987271 I
e canFam3.chr35            26312880 82 +  26524999 I
e manLeu1.NW_012107142v1     282320 1170 -    735854 M

a score=1256922.000000
s hg38.chr6_GL000254v2_alt  1444786 115 +   4827813 AGTCCGGAGGG-----------GCGTTACTTTCGGGTCTCGGCCTGTGTGTCCCCAGCCCTTTGTTGT-CCCCTCCGCAGGAAGGTGAAGGCTGTTTATGTAATCGGCG-GCGCCT---------CGCGGGCGACTG---
s panTro5.chr6             30314162 115 + 175400573 AGTTCGGAGGG-----------GCGTTACTTTCGGGTCTTGGCCTGTGTGTCCCCAGCCCTTTGTTGT-CCCCTCCGCAGGAAGGTGAAGGCTGTTTATGTAATCGGCG-GCGCCT---------CGCGGGCGACTG---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30548622 115 + 173848474 AGTTCGGAGGG-----------GCGTTACTTTCGGGTCTCGGCCTGTGTGTCCCCAACCCTTTGTTGT-CCCCTCCGCAGGAAGGTGAAGGCTGTTTATGTAATCGGCG-GCGCCT---------CGCGGGCGACTG---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     255608 114 +   2037526 AGTCCGGAGGG-----------GCGTTACTTTCGGGTCTCGGCCTGTGTGTCCCCAGCCCTTTGTTGT-CCCCTCCGCAGGAAGGTGAAGGCTGTTTATGTAATCAGCG-GCGCCT---------CGCGGGCGACT----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74922597 115 + 122973662 AGTCCGGAAGG-----------GCGTTACTTTCGGGTCTCGGCCTGTGTGTCCCCAGCCCTTGGTTGT-CCCCTCCGCAGGGAGGTGAAGGCTGTTTATGTAATCGGCG-GCGCCT---------TGAGGACGACTG---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30801817 115 + 172585720 AGTCCGGAGGG-----------GCGTTGCTTTCGGGTCTCGACCTGCGTGTCCCCAGCCCTTGGTTGT-CCCCTCCGCAGGGAGATGAAGGCTGTTTATGTAATCGGCG-GCGCCT---------CGCGGGCGACTG---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091305 115 - 170955103 AGTCCGGAGGG-----------GCGTTGCTTTCGGGTCTCGACCTGCGTGTCCCCAGCCCTTGGTTGT-CCCCTCCGCAGGGAGGTGAAGGCTGTTTATGTAATCGGCG-GCGCCT---------CGCGGGCGACTG---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     340589 115 +   1495729 AGTCCGGAGGG-----------GCGTTGCTTTCGGGTCTCGACCTGCGTGTCCCCAGCCCTTGGTTGT-CCCCTCCGCAGGGAGGTGAAGGCTGTTTATGTAATCGGCG-GCGCCT---------CGCGGGCGACTG---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     438494 116 -    863181 AGTCCGGAGGG-----------GCGTCGCTTTCGGGTCTCGACCTGAGTGTCCCCAGCCCTTGGTTGTCCCCCTCCGCAGGGAGGTGAAGGCTGTTTATGTAATCGGCG-GCGCCT---------CGCGGGCGACTG---
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29590638 115 -  71996105 AGTCCAGAGGG-----------GCGTTGCTTTCGGGTCTCGACCTGCGTGTCCCCAGCCCTTGGTTGT-CCCCTCCGCAGGGAGGTGAAGGCTGTTTATGTAATCGGCG-GCGCCT---------CGCGGGCGACTG---
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     228978 115 -   1829203 AGTCCGGAGGG-----------GCGTTGCTTTCGGGTCTCGATCTGCGTGTCCCCAGCCCTTGGTTGT-CCCATCCGCAGGGAGGTGAAGGCTGTTTATGTAATCGGCG-GCGCCT---------CGCGGGCGACTG---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30401392 115 + 171630274 CGTCCGGAGAG-----------GCGTTGCTTGCGGGTCTTGGCCTGCGTGTCTCCAGCTCTCGGTTGT-CCCCTCCTTAGGGAGGTGAAGGCTGTTTATGTAATCGGCG-GCGCTT---------CGCGGGCGACCG---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           225280 115 +    515838 CGTCCGGAGGG-----------GCGTTGCTTGCTGGTCTCGGCCTGCGTGTCTCCAGCCCCCGGTTTT-CCCCTCCTTAGGGAGGTGAAGGCTGTTTATGTAATCGGCG-GCGCCT---------CGCGGGCGACTG---
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     856256 115 -   1771730 CGTCCGGAGGG-----------GCGTTGCTTGCGGGTCTCGGCCTGCTTGTCACCAGCCCTCTGTTTT-CCCCTCCTTAGGGAGGTGAAGGCTGTTTATGTAATCGGCG-GCGCCT---------CGCGGGCGACCG---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     344853 115 -    383796 CGTCCGGAGGG-----------GCGTTGCTTGCGGGTCTCGGCCTGCGTGTCCCCAGCTCTCGGTTGT-CCCCTCCTTAGGGAGGTGAAGGCTGTTTATGTAATCGGCG-GCGCCT---------CGCGGGCGACCG---
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     124932 100 -   1411461 CGTCCGGAGGG-----------GAGTTGCTTGCGTGTCGCGGTCTGCGTGTCTCCAGCCCAGGGTTGT-CCCTT---------------GGCTGCTTATGTAATCTGCG-GCGCCT---------CGAGGGCGACCG---
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           274689 114 +  18854210 CATCCGAAAGG-----------AAGTTGCTTGCGGGTCTTCGCCAGCGTGTCCCTAGACCAGAGCTGT-CCCCTCGGCTGCTAAGC-AAGTCTGCTTATGTAATCCGCG-GCGTTA---------CGCGGGCGACCG---
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58066655 125 -  94987271 AGTCCAGGGGGTGGTGCTGGAAGAGTTGTTTGCCTGTCTGCGCCTACATATCCCCAACCCAAGGTTGT-CCCTTCAACTGGCAAGTCAGGGCCACTTATGTAATC-GCC-ACGCCT---------TGCGGGTAACTT---
i mm10.chr17               I 1646 C 0
s dasNov3.JH580105            18002 106 -     45298 AATGCCAAGAG-----------GAAGGAC-TGCAGGTCCCGGCCTGCGGGC------------------GCGCCTGGCGGGCAGGTGAGGGCTGCATGTG----CGGCGCGCGCCTGCTGGCGTAAGCGCGCACCTGCCG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e canFam3.chr35            26312880  82 +  26524999 I
e manLeu1.NW_012107142v1     282320 1170 -    735854 M

a score=1198863.000000
s hg38.chr6_GL000254v2_alt  1444901 110 +   4827813 -------GGGGAAGTGAATGGGGGAGCCTGGCC------------AGGGCTGACT-----------GAGCGCCCCTG-------GAATCCGTG------CTCCGGGCGTTGGCTCACTCC--CGCC------------------CCGACACCTGGGCCCGCC----------------CTCCCGCT-GCG
s panTro5.chr6             30314277 110 + 175400573 -------GGGGAACTGGATGGGGGAGCCTGGCC------------AGGGCTGACT-----------GAGCGCCCCTG-------GAATCCGCG------CTCCGGGCGTTGGCTCACTCC--CGCC------------------CCGACACCTGGGCCCGCC----------------CTCCCGCT-GCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30548737 110 + 173848474 -------GGGGAACTGGATGGGGGAGCCTGGCC------------AGGGCTGACT-----------GAGCGCCCCTG-------GAATCCGCG------CTCCGGGCGTTGGCTCACTCC--CGCC------------------CCGACACCTGGGCCCGCC----------------CTCCCGCT-GCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     255722 110 +   2037526 -------GGGGAACTGGATGGGGGAGCCTGGCC------------AGGGCTGACT-----------GAGCGCCCCTG-------GAATCCGCG------CTCCGGGCGTTGGCTCACTCC--CGCC------------------CCGACACCTGGGCCCGCC----------------CTCCCGCT-GCG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74922712 110 + 122973662 -------GGGGAACTGGATGGGGGAGCCTGGCC------------AGGGCTGACT-----------GAGCGCCCCTG-------GAATCCGTG------CTCCGGGCGTTGGCTCACTCC--CGCC------------------CCGACACCTGGGCCCGCC----------------CTCCCGCT-GCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30801932 110 + 172585720 -------GGGGAACTGGCTGGGGGAGCCTGGCC------------AGGGCTGACT-----------GCGCGCCCCTG-------GAATCCGCG------CTCCGGGCGTTGGCTCGTTCC--CGCC------------------CCGACACCTGGGCCCGCC----------------CTCCCGCT-GCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091420 110 - 170955103 -------GGGGAACTGGCTGGGGGAGCCTGGCC------------AGGGCTGACT-----------GCGCGCCCCTG-------GAATCCGCG------CTCCGGGCGTTGGCTCTTTCC--CGCC------------------CCGACACCTGGGCCCGCC----------------CTCCCGCT-GCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     340704 110 +   1495729 -------GGGGAACTGGCTGGGGGAGCCTGGCC------------AGGGCTGACT-----------GCGCGCCCCTG-------GAATCCGCG------CTCTGGGCGTTGGCTCTTTCC--CGCC------------------CCGACACCTGGGCCCGCC----------------CTCCCGCT-GCG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     438610 110 -    863181 -------GGGGAACTGGATGGGGGAGCCTGGCC------------AGGGCTGACT-----------GCGCGCCCCTG-------GAATCTGCG------CTCCGGGCGTTGCCTCGTTCC--CGCC------------------CTGACACCTGGGCCCGCC----------------CTCCCACT-GCG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29590753 110 -  71996105 -------GGGGAACTGGATGGGGGAGCCTGGCC------------AGGGCTGACT-----------GCGCGCCCCTG-------GAATCTGCG------CTCCGGGCGTTGGCTCGTTCC--CGCC------------------CCGACACCTGGGCCCGCC----------------CTCCCGCT-GCG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     229093 110 -   1829203 -------GGGGAACTGGATGGAGGAGCCTAGCC------------AGGGCTGACT-----------GCGCGCCCCTG-------GAATCTGCG------CTCCGGGCGTTGGCTCGTTCC--CGCC------------------CCGACACCTGGGCCCGCC----------------CTCCCGCT-GCG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30401507 110 + 171630274 -------GGGGAACTGGATGGGGGAGCCGGGCC------------AGGGCTGACT-----------GCGGGCCCCTG-------GAATCCGCG------CTCCGGGCGTTGGCTCGCTCC--CGCC------------------CTTACACCAGGGCCCGCC----------------CTCCCGCT-GCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           225395 112 +    515838 -------GGGGAACTGGATGGGGGAGCCGGGCC------------AGGGCTGACT-----------GCGCGCCCCTG-------GAATCCGCG------CTCCGGGCGTTGGCTCGCTCCCGCGCC------------------CTAACACCAGAGCCCGCC----------------CTCCCGCT-GCG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     856371 110 -   1771730 -------GGGGAACTGGATGGGGGAGCCGGGCC------------AGGGCTGACT-----------GCGCGCCCCTG-------GAATCCGCG------CTCCGGGCGTTGGCTCGCTCC--CGCC------------------CTTACACCAGAGCCCGCC----------------CTCCCGCT-GCG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     344968 110 -    383796 -------GGGGAACTGGATGGGGGAGCCGGGCC------------AGGGCTGACT-----------GCGCGCCCCTG-------GAATCCACG------CTCCGGGCGTTGGCTCGCTCC--CGCC------------------CTTACACCAGGGCCCGCC----------------CTCCAGCT-GCG
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     125032 108 -   1411461 -------GGGGAACTGGATGGAGGAGCCGGGCC------------AGAGCTGACT-----------GCCCGCTCCTG-------GAATCCGCG------CTCCGGGCGTTGTCTCGCTCC--CGCC------------------CTGACACCTGGGCCCGCC----------------TC-CCGCT-GC-
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           274803 109 +  18854210 -------GGGGAACTGGATGGAGGAGCTGGGTC-------------GAGCTGACT-----------GCCGGCTCCTG-------GAATCCGCG------TTCCGGGCGTGGGCTCTCTCC--CGCC------------------CTGACGCTGGGGCCCGCC----------------CCTCTGCT-GCG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58066780  80 -  94987271 -------GGGGAACTGGACAGAGGAGCCCGGCC------------TGGGCTGACT-----------GAAT-CTCCTG-------GAATCCGTGGGCGGATACAGAGAG--------------GGCC------------------TCGGCA----------------------------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26312962  80 +  26524999 -------GGGGGTGGGGGTGGGGGGGCACGTTC------------TG----------------------------CT-------AAACCTGAG------CTCTGGGGGTGGGCTCTCCAC--AA----------------------------GGGACCCTCA----------------CCCCTGCG----
i canFam3.chr35            I 82 C 0
s dasNov3.JH580105            18108 183 -     45298 GTGTAAGCGCGCACTCGTTGGTGTAAGCGCGCACCTGCTGGTGTAAGCGCTCACCTGCTGGCGTAAGCGCGCACCTGCTGGTGTAAGCGCGCG-----CCTGCTGGCGTAAGCGCGCACC--TGCCGGTGTAAGCGCGCACTCGTTGGTGTAAGAGCGCACCTGCTGGTGTAAGCGCGCACCTGCTGGCG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e manLeu1.NW_012107142v1     282320 1170 -    735854 M

a score=240360.000000
s hg38.chr6_GL000254v2_alt  1445011 19 +   4827813 CAGCCACGCGCCGGGCAGC--------
s panTro5.chr6             30314387 19 + 175400573 CAGCCACGCGCCGGGCAGC--------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30548847 19 + 173848474 CAGCCACGCGCCGGGCAGC--------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     255832 19 +   2037526 CAGCCACGCGCCGGGCAGC--------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74922822 19 + 122973662 CAGCCACGCGCCGGGAAGC--------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802042 19 + 172585720 CAGCCGCCCGCCGGGCAGC--------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091530 19 - 170955103 CAGCCGCCCGCCGGGCAGC--------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     340814 19 +   1495729 CAGCCGCCCGCCGGGCAGC--------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     438720 19 -    863181 CAGCCACCCGCCGGGCAGC--------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29590863 19 -  71996105 CAGCCACCAGCCGGGCAGC--------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     283490 19 -    735854 CAGCCACCCGCCGGGCAGC--------
i manLeu1.NW_012107142v1   M 1170 C 0
s colAng1.NW_012115577v1     229203 19 -   1829203 CAGCCACCCGCCGGGCAGC--------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30401617 19 + 171630274 CAGCCACGCGCCGGGCAGC--------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           225507 19 +    515838 CAGCCACGCGCCGGGCAGC--------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     856481 19 -   1771730 CAGCCACGCGCCGGGCAGC--------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     345078 19 -    383796 CAGCCACGCGCCGGGCAGC--------
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     125140 19 -   1411461 CAGACACGCGCCAGGCAGC--------
i proCoq1.NW_012149775v1   C 0 I 11
s otoGar3.GL873550           274912 19 +  18854210 CAGACCAAAGCCTGGCAGC--------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58066860 19 -  94987271 CAGACACGCGCCTGGCAGC--------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26313042 11 +  26524999 -GGACCCCCACC---------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            18291 26 -     45298 TAACCGC-CGCGGGGACGCGGGGAACT
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I

a score=78495.000000
s hg38.chr6_GL000254v2_alt  1445030 12 +   4827813 AGCGTGGGCTGG
s panTro5.chr6             30314406 12 + 175400573 AGCGTGGTCTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30548866 12 + 173848474 AGCGTGGTCTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     255851 12 +   2037526 AGCGTGGTCTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74922841 12 + 122973662 AGGGTGGTCGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802061 12 + 172585720 AGGGTGGTCGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091549 12 - 170955103 AGGGTGGTCGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     340833 12 +   1495729 AGGGTGGTCGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     438739 12 -    863181 AGGGTGGTCGGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29590882 12 -  71996105 AGGGTGGTCGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     283509 12 -    735854 AGGGTGGTCGGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     229222 12 -   1829203 AGGGTGGTCGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30401636 12 + 171630274 CGGGTGGTCGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           225526 12 +    515838 CAGGTGGTCAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     856500 12 -   1771730 CGGGTGGTCGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     345097 12 -    383796 CGGGTGGTCGGG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           274931 11 +  18854210 CCGGCTGTCTA-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58066879  7 -  94987271 TGCGTGA-----
i mm10.chr17               C 0 C 0
s canFam3.chr35            26313053  5 +  26524999 -----AGCCT--
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            18317 12 -     45298 GGAAGGGGCAGG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e proCoq1.NW_012149775v1     125159 11 -   1411461 I

a score=294822.000000
s hg38.chr6_GL000254v2_alt  1445042 21 +   4827813 -CGGGCGACTC-----CCCACGCCTCC
s panTro5.chr6             30314418 21 + 175400573 -CGGGCGACTC-----CCCACGCCTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30548878 21 + 173848474 -CGGGCGACTC-----CCCACGCCTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     255863 21 +   2037526 -CGGGCGACTC-----CCCACGCCTCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74922853 21 + 122973662 -TGGGCGACTC-----CCCACGCCTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802073 21 + 172585720 -CGGGCGACTC-----CCCACGCCTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091561 21 - 170955103 -CGGGCGACTC-----CCCACGCCTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     340845 21 +   1495729 -CGGGCGACTC-----CCCACGCCTCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     438751 21 -    863181 -CAGGCGACTC-----CCCAAGCCTCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29590894 21 -  71996105 -CGGGCGACTC-----CCCACGCCTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     283521 21 -    735854 -CGGGCGACTC-----CCCACGCCTCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     229234 21 -   1829203 -TGGGCGACTC-----CCCACGCCTCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30401648 21 + 171630274 -CGGGCGACTC-----CCCACGCCTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           225538 21 +    515838 -CGGGCGACTC-----CCCGAGCTTCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     856512 21 -   1771730 -CGGGCGACTC-----CCCAAGCCTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     345109 21 -    383796 -CGGGCGACTC-----CCCACGCCTCC
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     125170 21 -   1411461 -CGGGCGACTC-----CCCACGCCTCC
i proCoq1.NW_012149775v1   I 11 I 246
s otoGar3.GL873550           274942 21 +  18854210 -CTGGCGACTC-----CTCGCGCCTCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58066886 20 -  94987271 --GGTCCGCCA-----GCCACACCCCG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26313058 26 +  26524999 -CAGGCCCCTCCAATTCCCGGGTCTCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            18329 18 -     45298 CCGGGC----T-----GACAGGCCTCC
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I

a score=207059.000000
s hg38.chr6_GL000254v2_alt  1445063 21 +   4827813 TGCAACACCGCCCTCTCCCTA
s panTro5.chr6             30314439 21 + 175400573 TGCAACACCGCCCTCTCCCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30548899 21 + 173848474 TGCAACACCGCCCTCTCCCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     255884 21 +   2037526 TGCAACACCGCCCTCTCCCTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74922874 21 + 122973662 TGCAACACCGCCCTCTCCCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802094 21 + 172585720 TGCAACACCGCCTTCTCCCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091582 21 - 170955103 TGCAACACCGCCTTCTCCCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     340866 21 +   1495729 TGCAACACCGCCTTCTCCCTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     438772 21 -    863181 TGCAACACCGCCTTCTCCCTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29590915 21 -  71996105 TGCAACACCGCCTTCTCCCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     283542 21 -    735854 TGCAACACCGCCTTCTCCCTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     229255 21 -   1829203 TGCAACACCAACTTCTCCCTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30401669 21 + 171630274 TGCAAAACTGGCTTCTCCCTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           225559 21 +    515838 TGCAAAACTGCCTTCTCCCTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     856533 21 -   1771730 TGCAAAACTGCTTTCTCCCTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     345130 21 -    383796 TGCAAAACTGCCTTCTCCCTA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           274963 21 +  18854210 TATTGCATTGCAGTCTCCCAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58066906 21 -  94987271 TACAGCCCAGCCACCGACCTA
i mm10.chr17               C 0 I 10308
s canFam3.chr35            26313084  9 +  26524999 --------CACCCTCAC----
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            18347 13 -     45298 TGGAATGCGCCCT--------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e proCoq1.NW_012149775v1     125191 246 -   1411461 I

a score=690042.000000
s hg38.chr6_GL000254v2_alt  1445084 75 +   4827813 -CCGGAGCGAGGAGGCAGGAAAAGCCTAGAGACGCCTGGT--------CCCATCCGCCTACCCAGTCCCCAGCCGGCCTGAAGG
s panTro5.chr6             30314460 75 + 175400573 -CCGGAGCGAGGCGGCAGGAAAAGCCTAGAGACGCCTGGT--------CCCATCCGCCTACCCAGTCCCCAGCCGGCCTGAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30548920 75 + 173848474 -CCGGAGCGAGGCGGCAGGAAAAGCCTAGAGACGCCTGGT--------CCCATCCGCCTACCCAGTCCCCAGCCGGCCTGAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     255905 75 +   2037526 -CCAGAGCTAGGCGGCAGGAAAAGCCTAGAGACGCCTGGT--------CCCATCCGCCTACCCAGTCCCCAGCCGGCCTGAAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74922895 75 + 122973662 -CCGGAGCGAGGCGGCAGGAAAAGCCTAGAGACGCCCGGT--------CCCATCCGCCTACCCAGTCCCCAGCCGGGCTGAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802115 75 + 172585720 -CTGGAGCGAGGCGGCTGGAAAAGCCTAGAGACTCCTTGT--------CCCATCCGCCTCCCCAGTCCCCAGCCGGGCTAAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091603 75 - 170955103 -CTGGAGCGAGGCGGCTGGAAAAGCCTAGAGACTCCTTGT--------CCCATCCGCCTCCCCAGTCCCCAGCCGGGCTGAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     340887 75 +   1495729 -CTGGAGCGAGGCGGCTGGAAAAGCCTAGAGACTCCTTGT--------CCCATCTGCCTCCCCAGTCCCCAGCCGGGCTGAAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     438793 75 -    863181 -CTGGAGCGAGGCGGCTGGAAAAGCCTAGAGACTCCTTGT--------CCCATCCGCCTCCCCAGTCCCCAGCCGGGCTGAAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29590936 75 -  71996105 -CTGCAGCGAGGCGGCTGGAAAAGCCTAGAGACTCCCGGT--------CCCACCCGCCTCCCCAGTCCCCAGCCGGGCTGAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     283563 75 -    735854 -CTGCAGCGAGGCGGCTGGAAAAGCCTAGAGACTCCTGGT--------CCCATCCGCCTCCCCAGTCCCCAGCCGGGCTGAAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     229276 75 -   1829203 -CTGGAGCGAGGCGGCTGGAAAAGCCTAGAGACTCTTGGT--------CCCATCCGCCTCCCCAGTCCCCAGCCGGGCTGAAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30401690 75 + 171630274 -CCCTACCGAGGCGGCTGGAAAATCCTACAGACCCCTGAA--------CCCATCCGCCTACCCAGTCCTCAGCCGGACTGAAGG
i calJac3.chr4             C 0 I 2
s saiBol1.JH378341           225580 75 +    515838 -CCCCACCGAAGCGGCTGGAAAATCCTACAGACGCCTGAT--------CCCATCCACCTACTCAGTCCCCAGCCGGACTGAAGG
i saiBol1.JH378341         C 0 I 2
s cebCap1.NW_016107755v1     856554 75 -   1771730 -CCCCACCGAGGCGGCTGGAAAATCCTACAGACGCCTGAT--------CCCATCCGCCTACCCAGTCCCCAGCAGGACTGAAGG
i cebCap1.NW_016107755v1   C 0 I 2
s aotNan1.NW_018496904v1     345151 75 -    383796 -CCCGACCGAGGAGACTGGAAAATCCTGCAGACGCCTGAT--------CCCATCTGCCTACCCAGTGTCCAGCCGGGCTGAAGG
i aotNan1.NW_018496904v1   C 0 I 4053
s otoGar3.GL873550           274984 58 +  18854210 -TTCGAACGCTGAGGCTCTAAAAGCCTCCGGACGCCCGCC--------CTCATCCGCCTACCCTGCC-----------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26313093 44 +  26524999 -----------------AGGAACCCCCACCTCCGCCAGGT--------CCC-TCTGCCTCTGCATTTACC--------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            18360 76 -     45298 GGGCGAGCGGGGCG--TGGCGCGGCTCCCGGACACCCGGTCCGCCCTccccgccagcccgcccacgcgcgacccggcc------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58066927 10308 -  94987271 I
e proCoq1.NW_012149775v1     125191 246 -   1411461 I

a score=548326.000000
s hg38.chr6_GL000254v2_alt  1445159 63 +   4827813 GAGGAAGAGGAAGGAACCCATAATCATCCCAAAC--TGGCGCAAATGGTGGGTTTTACTGTCCAG
s panTro5.chr6             30314535 63 + 175400573 GAGGAAGAGGAAGGAACCCATAATCATCCCAAAC--TGGCGCAAATGGTGGGTTTTACTGTCCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30548995 63 + 173848474 GAGGAAGAGGAAGGAACCCATAATCATCCCAAAC--TGGCGCAAATGGTGGGTTTTACTGTCCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     255980 63 +   2037526 GAGGAAGAGGAAGGAACCCATAATCATCCCAAAC--TGGCGCAAATGGTGGGTTTTACTGTCCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74922970 63 + 122973662 GAGGAAGAGGAAAGAACTCATAATCATCCCAAAC--CGGCTCAAATCGTGGGTTTTACTGTCCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802190 65 + 172585720 GAGGAAGAGGAAGGAATCCACAATCATCCCAAACAACGGCGCAAATCGTGGGTTTTACTGTCCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091678 65 - 170955103 GAGGAAGAGGAAGGAATCCACAATCATCCCAAACAACGGCGCAAATCGTGGGTTTTACTGTCCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     340962 65 +   1495729 GAGGAAGAGGAAGGAATCCACAATCATCCCAAACAACGGCGCAAATCGTGGGTTTTACTGTCCAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     438868 65 -    863181 GAGGAAGAGGAAGGAATCCACAATCATCCCAAACAACGGCGCAAATCGTGGGTTTTACTGTCCAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29591011 65 -  71996105 GAGGAAGAGGAAGGAATCCACAATCATCCCAAACAACGGCACAAATCGTGGGTTTTACTGTCCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     283638 65 -    735854 GAAGAAGAGGAAAGAATCCACAATCGTCCCAAACAACGGCACAAATCGTGGGTTTTACTGTCCAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     229351 65 -   1829203 GAGGAAGAGGAAGGAATCCACAATCATCCCAAACAACGGCGCAAATCGTGGGTTTTACTGTCCAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30401767 65 + 171630274 GAGGAAGAGGAAGGAACCCATAATCATCTCATACTCTGGCCCAGATCGTGCGTTTTACTCTCCGT
i calJac3.chr4             I 2 C 0
s saiBol1.JH378341           225657 65 +    515838 GAGGAAGAGGAAGGAACCCATAATCATCTCAAACTCTGGCCCAGATCGTGCGTTTTACTCTCCGT
i saiBol1.JH378341         I 2 C 0
s cebCap1.NW_016107755v1     856631 65 -   1771730 GAGGAAGAGGAAGGAACCCATAATCATCTCAAACTCTGGCCCAGATCGTGCGTTTTACTCTCCGT
i cebCap1.NW_016107755v1   I 2 C 0
s aotNan1.NW_018496904v1     349279 65 -    383796 GAGGAAGAGAAAGGAACCCATAATCGTCTCAAACTCTGGCCCAGATCGTGCGTTTTACTCTCCGT
i aotNan1.NW_018496904v1   I 4053 C 0
s otoGar3.GL873550           275042 40 +  18854210 ---GGGGAGAATGGAACTCATAATAATCTTAAAG-------------------TCCTCTGTT---
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26313137 29 +  26524999 -----------------------CCACCTCCCACCA-------------GGGTCCTGCTGTCCAG
i canFam3.chr35            C 0 I 52
s dasNov3.JH580105            18436 53 -     45298 -----------gcgaccccgccgccgccagggccctgcccgcgAATCCTGGGGCCTGCTCGCGG-
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58066927 10308 -  94987271 I
e proCoq1.NW_012149775v1     125191 246 -   1411461 I

a score=911121.000000
s hg38.chr6_GL000254v2_alt  1445222 86 +   4827813 AGGTCATT-----------TCGTCTCTGCGTTTCCAACCTCCTCG-CCCTTTTACTTTTTTTGGGCTCACTCAGGAAACTGGAGCAG---TCCTTCTCTGG
s panTro5.chr6             30314598 86 + 175400573 AGGTCATT-----------TCGTCTCTGCGTTTCCAACCTCCTCG-CCCTTTTACTTTTTTTGGGCTCATTCAGGAAACTGGAGCAG---TCCTTCTCTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30549058 86 + 173848474 AGGTCATT-----------TCGTCTCTGCGTTTCCAACCTCCTCG-CCCTTTTACTTTTTTTGGGCTCATTCAGGAAACTGGAGCAG---TCCTTCTCTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     256043 86 +   2037526 AGGTCATT-----------TCGTCTCTGCGTTTCCAACCTCCTCG-CCCTTTTACTTTTTTTGGGCTCACTCAGGAAACTGGAGCAG---TCCTTCTCTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74923033 85 + 122973662 AGGTCATT-----------TCGTCTCTGCGTTTCCAACCTCCTCG-CCCTTTTAC-TTTTTTGGGCTCACTCAGGAAACTGGAGCAG---TCCTTCTCTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802255 85 + 172585720 AGGTAATT-----------TCTTCTCTGTGTTTCCAACCTCCTCG-CCCTTTTAC-TTTTTTGGGCTCACTCAGGAAACCGGAGCAG---TCCTTCTCTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091743 85 - 170955103 AGGTAATT-----------TCTTCTCTGTGTTTCCAACCTCCTCA-CCCTTTTAC-TTTTTTGGGCTCACTCAGGAAACCGGAGCAG---TCCTTCTCTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     341027 85 +   1495729 AGGTAATT-----------TCTTCTCTGTGTTTCCAACCTCCTCA-CCCTTTTAC-TTTTTTGGGCTCACTCAGGAAACCGGAGCAG---TCCTTCTCTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     438933 85 -    863181 AGGTAATT-----------TCTTCTCTGTGTTTCCAACCTCCTCG-CCCTTTTAC-TTTTTTGGGCTCACTCAGGAAACCGGAGCAG---TCCTTCTCTGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29591076 85 -  71996105 AAGTAATT-----------TCTTCTCTGTGTTTCCGACCTCTTTG-CCCTTTTAC-TTTTTTGGGCTCACTCAGGAAACCGGAGCAG---TCCTTCTCTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     283703 85 -    735854 AGGTAATT-----------TCTTCTCTGTGTTTCCGATCTCCTTG-CCCTTTTAC-TTTTTTGGGCTCACTCAGGAAACCGGAGCAG---TCCTTCTCTGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     229416 84 -   1829203 GGGTAATT-----------TCTTCTCTGTGTTT-CAACCTCCTCG-CCCTGTTAC-TTTTTTGAGCTCACTCAGGAAACCGGAGCAG---TCCTTCTCTGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30401832 85 + 171630274 AGGTCATT-----------TCGTCTCTGTGTTTCCAACCTCCTCC-CCCTTTTAT-ATTTTTGGGCTCGCTGAGGAAACAGGAGCAG---TCCTCCTCTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           225722 88 +    515838 GGGTCATT-----------TCGTCTCTGTGTTTCCAACCTTCTCT-CCCTTTTAC-TTTTTGGGGATCTCTTAGGAAACAGGAGCAGTCCTCCTCCTCTGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     856696 85 -   1771730 AGGTCATT-----------TCGTCTCTGTGTTTCCAACCTCCTCG-CCCTTTTAC-TTTTTGGGGATCTCTTAGGAAACAGGAGCAG---TCCTCCTCTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     349344 85 -    383796 AGGTCATT-----------TCGTCTCTGTGTTTCCAACCTCCTCG-CCCTTTTAC-ATTTTTGGGCTCGCTCAGGAAACAGGAGCAG---TCCTTCTCTGG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           275082 94 +  18854210 AGGTCATTT---TGTCCCATTGTCTCTGTGTTTCCAAGTTCCTCACCCCTTTTAC-TTTTTGAGAGTCATCCAGGAAACAGGAACTG---TCTTTGCCTGA
i otoGar3.GL873550         C 0 I 4
s dasNov3.JH580105            18489 96 -     45298 GGGTCCTCCGCGCAACCCGCCGCCTCGGCTTTCCCAAGCCCCTCG-CGCCTTTCA-CTTTTGCAGATCATCCCGGAATCAGGGGCAG---TCCTCCTCTGG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58066927 10308 -  94987271 I
e proCoq1.NW_012149775v1     125191 246 -   1411461 I
e canFam3.chr35            26313166 52 +  26524999 I

a score=169841.000000
s hg38.chr6_GL000254v2_alt  1445308 14 +   4827813 GTTTAACTTCAGTC
s panTro5.chr6             30314684 14 + 175400573 GTTTAACTTCAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30549144 14 + 173848474 GTTTAACTTCAGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     256129 14 +   2037526 GTTTAACTTCAGTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74923118 14 + 122973662 GTTTAACCTCAGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802340 14 + 172585720 TTTTAACTTCAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091828 14 - 170955103 TTTTAACTTCAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     341112 14 +   1495729 GTTTAACTTCAGTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     439018 14 -    863181 GTTTAACTTCAGTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29591161 14 -  71996105 GTTTAACTTCAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     283788 14 -    735854 GTTTAACTTCAGTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     229500 14 -   1829203 GTTTAACTTCAGTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30401917 14 + 171630274 GTTTAACTTCAGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           225810 14 +    515838 GTTTAACTTCAGTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     856781 14 -   1771730 GTTTAACTTCAGTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     349429 14 -    383796 GTTTAACATCAGTC
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     125437 14 -   1411461 GTTTAACTTCGATC
i proCoq1.NW_012149775v1   I 246 C 0
s otoGar3.GL873550           275180 14 +  18854210 ATTTAACCTTAATC
i otoGar3.GL873550         I 4 C 0
s dasNov3.JH580105            18585  9 -     45298 AGCTGACCT-----
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58066927 10308 -  94987271 I
e canFam3.chr35            26313166 52 +  26524999 I

a score=1172976.000000
s hg38.chr6_GL000254v2_alt  1445322 98 +   4827813 CCTCACATGGCAACACTAGGAATGATCAAGACTTTTGTTGCGGGTAGTGGTGATGTGGGTT-TGAGAGGAGGATGCATCTGGTCGTGGGATTAATTTTG
s panTro5.chr6             30314698 98 + 175400573 CCTCACACGGCAACACTAGGAATGATCAAGACTTCTGTTGCGGGTAGTGGTGATGTGGGTT-TGAGAGGAGGATGCATCTGGTCGTGGGATTAATGTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30549158 98 + 173848474 CCTCACACGGCAACACTAGGAATGATCAAGACTTCTGTTGCGGGTAGTGGTGATGTGGGTT-TGAGAGGAGGATGCATCTGGTCGTGGGATTAATGTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     256143 98 +   2037526 CCTCACATGGCAACACTAGGAATGATCAAGACTTTTGTTGCGGGTAGTGGTGATGTGGGTT-TGAGAGAAGGATGCATCTGGTCGTGGGATTAATTTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74923132 98 + 122973662 CCTCACATGGCAACACTAGGAATGATCAAGACTTTTGTTGCGGGTAGTGGTGATGTGGGTT-TGAGGGGAGGATGCATCTGGTCGTGGGATTAATTTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802354 93 + 172585720 CCTCACATGGCGACACTAGGAATGATCAAGACTTTTGTTGCGG---GTGGTGATGTGGGTT-TGAGAGGAGGATACATCTGGCCCT--GATTCATTTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091842 93 - 170955103 CCTCACATGGCGACACTAGGAATGATCAAGACTTTTGTTGCGG---GTGGTGATGTGGGTT-TGAGAGGAGGATACATCTGGCCCT--GATTCATTTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     341126 93 +   1495729 CCTCACATGGCGACACTAGGAATGATCAAGACTTTTGTTGCGG---GTGGTGATGTGGGTT-TGAGAGGAGGATACATCTGGCCCT--GATTCATTTTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     439032 93 -    863181 CCTCACATGGCGACACTAGGAATGATCAAGACTTTTGTTGCGG---GTGGTGATGTGGGTT-TGAGAGGAGGATACATCTGGCCCT--GATTCATTTTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29591175 96 -  71996105 CCTCACATGGCGACACTAGGAATGATCAAGACTTTTGTTGCGGGTAGTGGTGATGTGGGTT-TGAGAGGAGGATACATCTGGCCCT--GATTCATTTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     283802 96 -    735854 CCTCACATGGCGACACTAAGAATGATCAAGACTTTTGTTGCGGGTAGTGGTGATGTGGGTT-TGAGAGGAGGATACATCTGGCCCT--GATTCATTTTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     229514 96 -   1829203 CCTCACATGGCGACACTAGGAATGATCAAGACTTTTGTTGCGGGTAGTGGTGATGTGGGTT-TGAGAGGAGGATACATCTGGCCCT--GATTCATTTTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30401931 98 + 171630274 CCTCACACGGCAACACTAGGAATGATCAAGACTTTGGTTTCGGGTAGTGGTGGTGCGGGTT-TGAGAGGAGGATGCGTCTGGTCCTGGGATAAATTTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           225824 98 +    515838 CCTCACATGGCAACACCAGGAATGATCAAGACTTTTGTTTCGGGTAGTGGTGATGCGGATT-TGAGTGGAGGAAGCATCTGGTCCTAGGATAAATTCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     856795 98 -   1771730 CTTCACACGACAACACTAGGAATGATCAAGACTTTCGTTTTGGGTAGTGGTGATGCGGGTT-TGAGAGGAGGAAACATCTGGTCCTGGGAAAAATTTTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     349443 98 -    383796 CCTCACATGGCAACACTAGGAATGATCAAGACTTTTGTTGCGGTTAGTGGTGGTGCGGGTT-TGAGAAGAGGATGCGTCTGGTCCTGGGTTAAATTTTG
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     125451 98 -   1411461 CCTCACGTGGCAACCCTAGAAATGATCGAGATTTCTCTTGCGGGTGGTGGTGGTGAGGGTT-CCAGGGGAAGATGCATCTAGTCCTGGGATTAATTTTg
i proCoq1.NW_012149775v1   C 0 I 715
s otoGar3.GL873550           275194 95 +  18854210 CCTCACATGGCAACCCTAGAAATGATCGAGATTTTTGTTACA---AGTGGTGGTGAGGGTT-TGAAGGGAAGATGCATCTGGTTCTGGGATTAATTTTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26313218 78 +  26524999 CCTTCCACAGCGCCACAGTGAATGATGAAGATTTTTGCTGTGG---GTGGTGGCGAGGGTTATGA------------------CCTGAGATTACTTTTG
i canFam3.chr35            I 52 C 0
s dasNov3.JH580105            18594 88 -     45298 -------GGGCAACGC--GAAATGATGGAGAGTTTCGTTGCGGATCGTGGTGGTGAGAGTT-CAAGGGGCTGACGCCGCCAGGCG-GGGATCGATTCCG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58066927 10308 -  94987271 I

a score=140701.000000
s hg38.chr6_GL000254v2_alt  1445420 11 +   4827813 GTTTCTGAGTA
s panTro5.chr6             30314796 11 + 175400573 GTTTCTGAGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30549256 11 + 173848474 GTTTCTGAGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     256241 11 +   2037526 GTTTCTGAGTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74923230 11 + 122973662 GTTTCTGAGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802447 11 + 172585720 GTTTCTGAGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091935 11 - 170955103 GTTTCTGAGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     341219 11 +   1495729 GTTTTTGAGTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     439125 11 -    863181 GTTTCTGAGTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29591271 11 -  71996105 GTTTCTGAGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     283898 11 -    735854 GTTTCTGAGTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     229610 11 -   1829203 GTTTCTGAGTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30402029 11 + 171630274 GTTTCTGAGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           225922 11 +    515838 GTTTCTGAGTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     856893 11 -   1771730 GTTTCTGAGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     349541 11 -    383796 GTTTCTGAGTA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           275289 11 +  18854210 GTTTCAGAATA
i otoGar3.GL873550         C 0 I 487
s canFam3.chr35            26313296  9 +  26524999 GCATCTGAG--
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            18682  9 -     45298 GTTTCTGAG--
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58066927 10308 -  94987271 I
e proCoq1.NW_012149775v1     125549 715 -   1411461 I

a score=215692.000000
s hg38.chr6_GL000254v2_alt  1445431 19 +   4827813 TTATGAAGAACTAGAAAAG
s panTro5.chr6             30314807 19 + 175400573 TTATGAAGAACTAGAAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30549267 19 + 173848474 TTATGAAGAACTAGAAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     256252 19 +   2037526 TTATGAAGAACTAGAAAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74923241 19 + 122973662 TTATGAAGAACTAGAAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802458 19 + 172585720 CTATGGAGAACCAGAAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091946 19 - 170955103 CTATGGAGAACCAGAAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     341230 19 +   1495729 CTATGGAGAACCAGAAAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     439136 19 -    863181 CTATGGAGAACCAGAAAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29591282 19 -  71996105 CGATGGAGAACCAGAAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     283909 19 -    735854 CGATGGAGAACCAGAAAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     229621 19 -   1829203 CTATGGAGAACCAGAAAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30402040 19 + 171630274 CTATGAAGAACTAGAAACG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           225933 19 +    515838 CTATGAAGAACTAGAAAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     856904 19 -   1771730 CTATGAAGAACTAGAAAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     349552 19 -    383796 CTATGAAGAACTAGAAAAG
i aotNan1.NW_018496904v1   C 0 C 0
s canFam3.chr35            26313305 18 +  26524999 -TATGCGGAAGTAGAAAAG
i canFam3.chr35            C 0 I 4158
s dasNov3.JH580105            18691 18 -     45298 -TGTGAGGAACCAGGAAAG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58066927 10308 -  94987271 I
e proCoq1.NW_012149775v1     125549 715 -   1411461 I
e otoGar3.GL873550           275300 487 +  18854210 I

a score=57256.000000
s hg38.chr6_GL000254v2_alt  1445450 7 +   4827813 TTTTGCG----
s panTro5.chr6             30314826 7 + 175400573 TTTTGCG----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30549286 7 + 173848474 TTTTGCG----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     256271 7 +   2037526 TTTTGCG----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74923260 7 + 122973662 TTTTGCG----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802477 7 + 172585720 TTTTGCG----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091965 7 - 170955103 TTTTGCG----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     341249 7 +   1495729 TTTTGCG----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     439155 7 -    863181 TTTTGCG----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29591301 7 -  71996105 TTTTGCG----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     283928 7 -    735854 TTTTGCG----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     229640 7 -   1829203 TTTTGCG----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30402059 7 + 171630274 TTCTGAG----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           225952 7 +    515838 TTCTGAG----
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     856923 7 -   1771730 TTCTGAG----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     349571 7 -    383796 TTCTGAG----
i aotNan1.NW_018496904v1   C 0 C 0
s dasNov3.JH580105            18709 7 -     45298 ----GCGCGCG
i dasNov3.JH580105         C 0 I 3505
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58066927 10308 -  94987271 I
e proCoq1.NW_012149775v1     125549 715 -   1411461 I
e canFam3.chr35            26313323 4158 +  26524999 I
e otoGar3.GL873550           275300 487 +  18854210 I

a score=79680.000000
s hg38.chr6_GL000254v2_alt  1445457 7 +   4827813 TATGTCG
s panTro5.chr6             30314833 7 + 175400573 TATGTCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30549293 7 + 173848474 TATGTCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     256278 7 +   2037526 TATGTCG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74923267 7 + 122973662 TATGTCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802484 7 + 172585720 TATGTCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091972 7 - 170955103 TATGTCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     341256 7 +   1495729 TATGTCG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     439162 7 -    863181 TATGTCG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29591308 7 -  71996105 TATGTCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     283935 7 -    735854 TATGTCG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     229647 7 -   1829203 TATGTCG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30402066 7 + 171630274 TATGTCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           225959 7 +    515838 TATGTCG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     856930 7 -   1771730 TATGTCG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     349578 7 -    383796 TATGTCG
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58066927 10308 -  94987271 I
e dasNov3.JH580105            18716 3505 -     45298 I
e proCoq1.NW_012149775v1     125549 715 -   1411461 I
e canFam3.chr35            26313323 4158 +  26524999 I
e otoGar3.GL873550           275300 487 +  18854210 I

a score=511510.000000
s hg38.chr6_GL000254v2_alt  1445464 44 +   4827813 GTTTTCAGGATGGGGTTCAGATGGGTCAAAGCCCTGTGCAGGTC
s panTro5.chr6             30314840 44 + 175400573 GTTTTCAGGATGGGGTTCAGATGGGTCAAAGCCCTGTGCAGGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30549300 44 + 173848474 GTTTTCAGGATGGGGTTCAGATGGGTCAAAGCCCTGTGCAGGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     256285 44 +   2037526 GTTTTCAGGATGGGGTTCAGATGGGTCAAAGCCCTGTGCAGGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74923274 44 + 122973662 GTTTTCAGGATGGGGTTCAGATGGGTCAAAGCCCTGTGCAGGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802491 44 + 172585720 GTTTTCAGGATGAGGTTCAGATGGGTCAAAGCCCTGTGCAGGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30091979 44 - 170955103 GTTTTCAGGATGAGGTTCAGATGGGTCAAAGCCCTGTGCAGGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     341263 44 +   1495729 GTTTTCAGGATGAGGTTCAGATGGGTCAAAGCCCTGTGCAGGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     439169 44 -    863181 GTTTTCAGGATGAGGTTCAAATGGGTCAAAGCCCTGTGCAGGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29591315 44 -  71996105 GTTTTCAGGATGAGGCTCAGATGGGTCAAAGCCCTGTGCAGGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     283942 44 -    735854 GTTTTCAGGATGAGGTTCAGATGAGTCAAAGCCCTGTGCAGGGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     229654 44 -   1829203 GTTTTCAGGATGAGGTTCAGATGGGTCAAAGCCCTGTGCAGGGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30402073 44 + 171630274 GTTTTCAGGATGAGGTTCGGATGGGTCAAAGCCCTGCGCAGGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           225966 44 +    515838 GTTTTCAGGAAGAGGTTCGGATGGGTCAAAGCCCTGTGCAGGGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     856937 44 -   1771730 GTTTTCAGGATGAGGTTCGGATGGGTCAAAGCCTTGTGCAGGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     349585 44 -    383796 GTTTTCAGGATGAGGTTCGGTTGGGTCAAAGCCTTGTGCAGGGC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           275787 44 +  18854210 GTTTTCAGGATGAGGTCCAGGTGGGCCGAGACTGCGTTCAGGAT
i otoGar3.GL873550         I 487 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58066927 10308 -  94987271 I
e dasNov3.JH580105            18716 3505 -     45298 I
e proCoq1.NW_012149775v1     125549 715 -   1411461 I
e canFam3.chr35            26313323 4158 +  26524999 I

a score=1220370.000000
s hg38.chr6_GL000254v2_alt  1445508 125 +   4827813 CACGGGGGCTGCAGGAGGTAAAATGGAGGAGGAGACAGGCGGACAAGCTGGGGTCAGTGGTCCACTCCCCTGTGTC--TGTCTTAACCGAGATGCAGCTGGATGCT-----------------------------------------------TGCACGTGG-----------Cagctttttcaa
s panTro5.chr6             30314884 125 + 175400573 CACGGGGGCTGCAGGAGGTAAAATGCAGGAGGAGACAGGCGGACAAGCTGGGGTCAGTGGTCCACTCCCCTGTGTC--TGTCTTAACCGAGATGCAGCTGGATGCT-----------------------------------------------TGCACGTGG-----------Cagctttttcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30549344 125 + 173848474 CACGGGGGCTGCAGGAGGTAAAATGCAGGAGGAGACAGGCGGACAAGCTGGGGTCAGTGGTCCACTCCCCTGTGTC--TGTCTTAACCGAGATGCAGCTGGATGCT-----------------------------------------------TGCACGTGG-----------Cagctttttcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     256329 125 +   2037526 CACGGGGGCTGCAGGAGGTAAAATGCAGAAGGAGACAGGCGGACAAGCTGGGGTCAGTGGTCCACTCCCCTGTGTC--TGTCTTAACCGAGATGCAGCTGGATGCT-----------------------------------------------TGCACGTGG-----------Cagctttttcaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74923318 125 + 122973662 CACAGGGGCTGCACGAGGTAAGATGGAGGAAGAGACAGAGGGACAAGCCGGGGTCAGCGGTCCAGTCCCCTGCGTC--CGTCTTAAACAAGATGCAGCTGGATGCT-----------------------------------------------TGCACGCGG-----------Cagctttttcaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802535 125 + 172585720 CACAGGGGCTGCAGGAGGTAAGATGGAGGAGGAGCCAGGGGGACAAGCCGGGGTCAGTGGTCCAGTCCCCTACGTC--TGTCTTAACCAGGATGCAGCTGGATGCT-----------------------------------------------TGCACGTGG-----------CAGCTTTTTCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30092023 125 - 170955103 CACAGGGGCTGCAGGAGGTAAGATGGAGGAGGAGCCAGGGGGACAAGCCGGGGTCAGTGGTCCAGTCCCCTACGTC--TGTCTTAACCAGGATGCAGCTGGATGCT-----------------------------------------------TGCACGTGG-----------CAGCTTTTTCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     341307 125 +   1495729 CACAGGGGCTGCAGGAGGTAAGATGGAGGAGGAGCCAGGGGGACAAGCCGGGGTCAGTGGTCCAGTCCCCTACGTC--TGTCTTAATCAGGATGCAGCTGGATGCT-----------------------------------------------TGCAGGTGG-----------CAGCATTTTTAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     439213 120 -    863181 CACAGGGGCTGCAGGAGGTAAGATGGAGGAGGAGCCAGGGGGACAAGCC-----CAGTGGTCCAGTCCCCTACGTC--TGTCTTAACCAGGATGCAGCTGGATGCT-----------------------------------------------TGCACGTGG-----------CAGCTTTTTCAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29591359 125 -  71996105 CACAGGGGCTGCAGGAGGTAAGATGGAGGAGGAGCCAGGGGGACAAGCCGGGGTCAGTGGTCCAGTTCCCTACGTC--TGTCTTAACCAGGATGCAGCTGGATGCT-----------------------------------------------TGCACGTGG-----------CAGCTTTTTCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     283986 125 -    735854 CACAGGGGCTGCAGGAGGTAAGATGGAAGAGGAGCCAGGGGGACAAGCCGGGGTCAGTGGTCCAGTTCCCTACGTC--TGTCTTAACCAGGATGCAGCTGGATGCT-----------------------------------------------TGCACGTGG-----------CAGCTTTTTCAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     229698 125 -   1829203 CACAGGGGCTGCAGGAGGTAAGATGGAGGAGGAGCCAGGGGGACAAGCCGGGGTCAGTGGTCCAGTCCCCTACGTC--TGTCTTAACCAGGATGCAGCTGGATGCT-----------------------------------------------TGCACGTGG-----------CAGCTTTTTCAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30402117 124 + 171630274 CGCGGGGGCTGCGGGAGATAAGGTGGAGGAAGAGAGAGG-GAACAAGCCGGGGTCAGTGGTGCAGTCCTCCGAGTC--TGTCTTATCCACGGTGCAGCTGGATGCT-----------------------------------------------TGCACTTGG-----------Cagctttttcaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           226010 124 +    515838 CATGGGGGCTGCAGGAGATAAGGTGGAGGAAGACAGGGG-GAACAAGCCGAGGTCAGTGGTCCAGGCCCCCGAGTC--TGTCTTAACCAGGATGCAGCTAGATGCT-----------------------------------------------TGCACTTGG-----------Cagctttttcaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     856981 123 -   1771730 CATGGGAGCTGCAGGAGATAAGGTGGAGGAAGAGAGAGG-GAACAAG-CGGGGTCAGTGGTCCAGGCCCCCGTGTC--TGTCTTAACCAGGATGCAGCTAGATGCT-----------------------------------------------TGCACTTGG-----------Cagctttttcaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     349629 123 -    383796 CACGGGGGCTGCGGGAGATAAGGTGGAGGAAGAGAGAGG-GAGCAAG-CCGGGTCAGTGGTCCGGTCCCCCGAGTC--TGTCTTAACCAGGGTGCAGCTAGACGCT-----------------------------------------------TGCACTTGG-----------Cagctttttcaa
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           275831 181 +  18854210 CAAGAGGGCTGCAGGAGGTGAGGTAGAGAAGAAAGCAGGGGTAGATC----GGTTAGTGATCCAGTCCCCCTCATCTGTGTCTTAACCAGGATGCAGCTGGATGCTCTCTCATCTCAGCTTTTTCTTCCTTTTTTTGTTCAAGGTATCCAAAGTTCAAATGGTAATCTCATCTCagttttttcaa
i otoGar3.GL873550         C 0 I 3
s mm10.chr17               58077235 103 -  94987271 CACAAGAGTTTCAGGTAATACAGTAGAGAAAGCAGCAGC-CAATGTGTTGGA--CAGCGCCTTGCACCCCTGTGTC---------AGCAGGGTGCAGCCAGAAGCT-----------------------------------------------TTTCTGAGG-----------------------
i mm10.chr17               I 10308 C 0
e micMur3.chr6               319141 313 + 123392446 I
e dasNov3.JH580105            18716 3505 -     45298 I
e proCoq1.NW_012149775v1     125549 715 -   1411461 I
e canFam3.chr35            26313323 4158 +  26524999 I

a score=779485.000000
s hg38.chr6_GL000254v2_alt  1445633 85 +   4827813 ccacctgttgatagacgt-----tcg-tttccagtcttatcctgttaccaactgtgctgcaatgaacagccttgtgtatagccttt-tagtg
s panTro5.chr6             30315009 85 + 175400573 ccacctgttgatagacgt-----tcg-tttccagtcttatcctgttaccaactgtgctgcaatgaacagccttgtgtatagccttt-tagtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30549469 85 + 173848474 ccacctgttgatagacgt-----tcg-tttccagtcttatcctgttaccaactgtgctgcaatgaacagccttgtgtatagccttt-tagtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     256454 85 +   2037526 ccacctgttgatagaagt-----tcg-tttccagtcttatcctgttaccaactgtgctgcaatgaacagccttgtgtatagccttt-tggtg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74923443 86 + 122973662 ccacctgttgatagacgt-----ttgttttccagtcttatcctgttaccaactgtgctgcaaagaacagccttgtgtatagccttt-tagtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802660 66 + 172585720 C------------------------g-tttccagtcttatcctgtcaccaactgtgctgcaatgaacagcctagtgtatagccttt-tagtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30092148 66 - 170955103 C------------------------g-tttccagtcttatcctgtcaccaactgtgctgcaatgaacagcctagtgtatagccttt-tagtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     341432 66 +   1495729 C------------------------g-tttccagtcttatcctgttaccaactgtgctgcaatgaacagcctagtgtatagccttt-tagtg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     439333 66 -    863181 C------------------------g-tttccagtcttatcctgttaccaactgtgctgcaatgaacagcctagtgtatagccttt-tagtg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29591484 66 -  71996105 C------------------------g-tttccagtcctatcctgttaccaactgtgctgcaatgaacagcctagtgtatagccttt-taccg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     284111 66 -    735854 C------------------------g-tttccagtcttatcctgttaccaactgtactgcaatgaacagcctagtgtatagccttt-tagtg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     229823 66 -   1829203 C------------------------g-tttccagtcttatcctgttaccaactgtgctgcaatgaacagcctagtgtatagccttt-tagtg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30402241 85 + 171630274 ccaccggttgatagacgt-----ttg-tttccgatcttatcctgttaccaactgtgctgcaatgaacagctttgtgtatagctttt-ccgtg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           226134 85 +    515838 ccacctgctgatagacgt-----ttg-tttccggtcttaccccgttagcaactgtgctgcaatgaacagctttgtgtatagccttt-cagtg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     857104 85 -   1771730 ccacctgttgatagacgt-----ttg-tttccggtcttatcctgttaccaactgtgctgcaatgaacagctttgtgtataactttt-tagtg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     349752 85 -    383796 ccacctgttgatagacgt-----ttg-tttccggtcttatcctgttaccaactctgctgcaatgaacagctttgtgtatagctttt-tagtg
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     126264 82 -   1411461 CCAcctgtcgatgtacgt-----ttg-ttttcagacttgtcctgttacgaactgcgct---atgaacagcctcgttcatgGCCTTT-CTGTG
i proCoq1.NW_012149775v1   I 715 C 0
s otoGar3.GL873550           276015 90 +  18854210 ccacctgtcaatgtacatttgagttg-ttttcagtcttgctctgttacaaacactgttgcaatgaatagcctcgtatatagtcttt-tagtg
i otoGar3.GL873550         I 3 C 0
s mm10.chr17               58077338 51 -  94987271 ---------------------------------------TCCTGCTACCAA--GTGCAGCACTGAAAAACCTCGTGTATAGTCTTTGGGGGG
i mm10.chr17               C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e dasNov3.JH580105            18716 3505 -     45298 I
e canFam3.chr35            26313323 4158 +  26524999 I

a score=684191.000000
s hg38.chr6_GL000254v2_alt  1445718 66 +   4827813 tatttgagcctttcttttCGACCCAGGCATATTGTAAGGAGAGAGGAAC-T--GAG--ATAGAAGGAA---TAT
s panTro5.chr6             30315094 66 + 175400573 tatttgagcctttcttttCGACCCAGGCATATTGTAAGGAGAGAGGAAC-T--GAG--ATAGAAGGAA---TAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30549554 66 + 173848474 tatttgagcctttcttttCGACCCAGGCATATTGTAAGGAGAGAGGAAC-T--GAG--ATAGAAGGAA---TAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     256539 66 +   2037526 tatttgagcctttcttttCGACCCAGGCATATTGTAAGGAGAGAGGAAC-T--GAG--ATAGAAGGAA---TAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74923529 68 + 122973662 tatttgagcctttcttttCGACCCAGGCATATTGTAAGGAGAGAGGAAC-TGAGAG--ATAGAAGGAA---TAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802726 64 + 172585720 tatttgAGCCTTTCTTTTCGACCCAGGCATATTGTAAGGAGAGAGGAAC-T--GAA----AAATGGAG---TAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30092214 64 - 170955103 tatttgAGCCTTTCTTTTCGACCCAGGCATATTGTAAGGAGAGAGGAAC-T--GAA----AAATGGAG---TAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     341498 64 +   1495729 tatttgagcctttctttTCGACCCAGGCATATTGTAAGGAGAGAGGAAC-T--GAA----AAATGAAG---TAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     439399 64 -    863181 tatttgagcctttctttTCGACCCAGGCATATTGTAAGGAGAGAGGAAC-T--GAA----AAATGAAG---TAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29591550 64 -  71996105 tatttGAGCCTTTCTTTTCGACCCAGGCATATTGTAAGGAGAGAGCAAC-T--GAA----AAATGGAG---TAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     284177 64 -    735854 tatttgAGCCTTTCTTTTCGACCCAGGCATATTGTAAGGAGAGAGGAAC-T--GAA----AAATGGAG---TAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     229889 64 -   1829203 tatttgagcctttctttTCGACCCAGGCATATTGTAAGGAGAGAAGAAC-T--GAA----AAATGGAG---TAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30402326 68 + 171630274 tATTTGATCCTTCCTTTTCAATCCAGGCATATTGCAGAAAGGAAGAAAC-T--GAAAGACAGAAGGAA---TAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           226219 68 +    515838 tatttgATAATTCCTTTTCAATCCAGGCATATTGAAGGGAGGAAGAAAC-T--GAGAGACAGAAGGAA---TAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     857189 69 -   1771730 tatttgATCCTTCCTTTTCAATCCAGGCATATTGCAGGAAGGAAGAAACTT--GAGAGACAGAAGGAA---TAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     349837 68 -    383796 tatttgATCCTTCCTTTTCAATCCAGGCATATTGCAGGGAGGAAGAAAC-T--GAGACACAGAAGGAA---TAT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     126346 63 -   1411461 TATTCCAGCCTTTGTTTCCGACCCGGGCGTACTGGAGAGA-----GAAC-T--GAGAGAAAGAAGGAG---CAT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           276105 71 +  18854210 ggtttgagcctttctttTCCATCCAGGCACATTGGAGGGAGGGAGGAAT-T--GAAACAGAGAAGAAGAAACAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58077389 46 -  94987271 TATTCCA--CTGTCTTCTCTACTTGGG----------------GGAGAC-A--GGG----AGAGGAAA---CAT
i mm10.chr17               C 0 I 31
s canFam3.chr35            26317481 62 +  26524999 TATTTCAGGCTTTCGTGTGGATACAGGCACACTG--GGGAAAAGGACAT-T--GAA----AGAAGGAA---CAT
i canFam3.chr35            I 4158 C 0
e micMur3.chr6               319141 313 + 123392446 I
e dasNov3.JH580105            18716 3505 -     45298 I

a score=488945.000000
s hg38.chr6_GL000254v2_alt  1445784 49 +   4827813 TTAAAGCAGGGTCAGAGAAATCAGGACTGGATCAGGAGGAAGCCCG----AAG
s panTro5.chr6             30315160 49 + 175400573 TTAAAGCAGGGTCAGAGAAATCAGGACTGGATCAGGAGGAAGCCCG----AAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30549620 49 + 173848474 TTAAAGCAGGGTCAGAGAAATCAGGACTGGATCAGGAGGAAGCCCG----AAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     256605 49 +   2037526 TTAAAGCAGGGTCAGAGAAATCAGGACTGGATCAGGAGGAAGCCCG----AAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74923597 49 + 122973662 TTAAAGCAGGGCCAGAGAAATCAGGACTGGATCAGGAGGAAGCCCG----AAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802790 49 + 172585720 TTAAAGCAGGGTCAGAGAAATCAGCACTGGATCAGGAGGAAGCCCG----AAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30092278 49 - 170955103 TTAAAGCAGGGTCAGAGAAATCAGCACTGGATCAGGAGGAAGCCGG----AAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     341562 49 +   1495729 TTAAAGCAGGGTCAGAGAAATCAGCACTGGATCAGGAGGAAGCCCG----AAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     439463 49 -    863181 TTAAAGCAGGGTCAGAGAAATCAGCACTGGATCAGGAGGAAGCCCG----AAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29591614 49 -  71996105 TTAAAGCAGGGTCAGAGAAATCAGCACTGGATCAGGAGGAAGCCCG----AAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     284241 49 -    735854 TTAAAGCAGGGTCAGAGAAATCAGCACTGGATCAGGAGGAAGCCCG----AAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     229953 49 -   1829203 TTAAAGCAGGGTCAGAGAAATCAGCACTGGATCAGGAGGAAGCCAG----AAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30402394 41 + 171630274 TTAAAGC--------AGACATCAGGACTGGATCAGGAGGAAGCACG----AAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           226287 41 +    515838 TTAAAGC--------AGACATCAGGACTGGATCAGGAGGAAGCCCG----AAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     857258 41 -   1771730 TTAAAGC--------AGACATCAGGACTGGATCAGGAGGAAGCCCA----AAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     349905 41 -    383796 TTAAAGC--------AGACATCAGGACTGGATCCGGAGGAAGCCCC----AAG
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     126409 50 -   1411461 TTAAAGCGCGGTCAGAGACATCAGGCCTGGGTC---AGGAAGCCTGAATGAAG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           276176 38 +  18854210 TTAGAGCATGGTC---GAC------CCTGGATC---AGGAAGCCAGA---AGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26317543 45 +  26524999 TTAGGGCGGGGTCAGAGATGTCAGGCCTGCCCTGGGCAGCA--CCG------G
i canFam3.chr35            C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58077435 31 -  94987271 I
e dasNov3.JH580105            18716 3505 -     45298 I

a score=192690.000000
s hg38.chr6_GL000254v2_alt  1445833 14 +   4827813 GGTGTAACCTTCCC
s panTro5.chr6             30315209 14 + 175400573 GGTGTAACCTTCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30549669 14 + 173848474 GGTGTAACCTTCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     256654 14 +   2037526 GGTGTAACCTTCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74923646 14 + 122973662 GGTGTAACCTTCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802839 14 + 172585720 GGTGTAACCTTCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30092327 14 - 170955103 GGTGTAACCTTCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     341611 14 +   1495729 GGTGTAACCTTCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     439512 14 -    863181 GGTGTAACCTTCCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29591663 14 -  71996105 GGTGTAACCTTCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     284290 14 -    735854 GGTGTAACCTTCCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     230002 14 -   1829203 GATGTAACCTTCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30402435 14 + 171630274 GGTGTAGCCTTCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           226328 14 +    515838 GGTGTAACCTTCCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     857299 14 -   1771730 TGTGTAACCTTCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     349946 14 -    383796 TGTGTAACCTTCCC
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     126459 14 -   1411461 GGTGTAACCTTCCC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           276214 14 +  18854210 GTGGTAGTCCTCCC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26317588 13 +  26524999 AGTGTGATCTTTC-
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            22221 14 -     45298 GGCGCCGCGCTCCC
i dasNov3.JH580105         I 3505 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58077435 31 -  94987271 I

a score=545436.000000
s hg38.chr6_GL000254v2_alt  1445847 41 +   4827813 ATAGGGCTGCTGGAAGCCTAGCTTCAACCCTTCCAGCTGCA
s panTro5.chr6             30315223 41 + 175400573 ATAGGGCTGCTGGAAGCCTAGCTTCAACCCTTCCAGCTGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30549683 41 + 173848474 ATAGGGCTGCTGGAAGCCTAGCTTCAACCCTTCCAGCTGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     256668 41 +   2037526 ACAGGGCTGCTGGAAGCCTAGCTTCAACCCTTCCAGCTGCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74923660 41 + 122973662 ATAGGGCTGCTGGAAGCCTAGCTTCAACCCTTCCAGCTGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802853 41 + 172585720 ATGGGGCTGCTGGAAGCCTAGCTTCAACCCTTCCAGCTGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30092341 41 - 170955103 ATGGGGCTGCTGGAAGCCTAGCTTCAACCCTTCCAGCTGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     341625 41 +   1495729 ATAGGGCTGCTGGAAGCCTAGCTTCAACCCTTCCAGCTGCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     439526 41 -    863181 ATGGGGCTGCTGGAAGCCTAGCTTCAACCCTTCCAGCTGCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29591677 41 -  71996105 ATAGGGCTGCTGGAAGCCTAGCTTCAACCCTTCCAGCTGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     284304 41 -    735854 ATAGGGCTGCTGGAAGCCTAGCTTCAACCCTTCCAGCTGCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     230016 41 -   1829203 ATAGGGCTGCTGGAAGCCTAGCTTCAACCCTTCCACCTGCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30402449 41 + 171630274 ATAGGGCTGCTGGTAGCCTAGCTTCAACAGTTCCAGCGGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           226342 41 +    515838 ATAGGGCTGCTAGTAGCCTAGCTTCAAGCCTTCCAGCTGCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     857313 41 -   1771730 ATAGGGCTGCTGGTAGCCTAGCTTCAACCCTTCCAGCTGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     349960 41 -    383796 ATAGGGCTGCTGGTAGCCTAGCTTCAACCCTTCCAGCGGCA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     126473 41 -   1411461 AAAGGGCTACTGGAAGCCCAGCTTCAACGCTACCAGCTGCA
i proCoq1.NW_012149775v1   C 0 I 511
s otoGar3.GL873550           276228 39 +  18854210 AAAGGACTACTGGAAGCCTAGCTTCAACCCTATCAG--GAA
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58077466 30 -  94987271 GTAGGGCCAC----------ACTTCACTTCTACCATTTGT-
i mm10.chr17               I 31 C 0
s canFam3.chr35            26317601 31 +  26524999 ----------TGGAAGCCTAGCTCCAACCCCGCAAGCTGCA
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            22235 38 -     45298 AGAGGGCGCTCAGGACGCAGGTGTCAGCC--GCCAGC-GCG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I

a score=4314837.000000
s hg38.chr6_GL000254v2_alt  1445888 412 +   4827813 GCACATCCCAAACT----------GGGGCGAGAAGCGAGTGAGGAGGAGATGCAGAGGAAGGCAAAGA-ACAACTCTAGCGACCCAGGGTGATCCGGGTGCCGGAAAACAGAAGCTGGAAAAAGG------AGATCTG-CCCCGGAAAGGAGGCATGGAAAGTGTAGATGTGGGTCCTCGAGGTGGCGTCGTAGAAGACTACCTCTCCGCCCTAGTAATCCAAGCGGACGCCCACTTTGTTCGGACAGATCGGGAGATCCT----CCCGGGAACCGCTCTCGATGAGCGCCTGGCACTGGGAGCCGCTGCTGTGCAGCTCCACGAAGCCGGTCAAGGGCTCCAC-------CTCCAGGAAGCCCCGCCTGGGAACCAGCTCCAAGGCCAAGCCCCGGCACGCAGGCCCCGCCCCCGGGCCGTTGGAGCTCCG-CCTCCCAGG
s panTro5.chr6             30315264 408 + 175400573 GCACATCCCAAAGT----------GGGGCGAGAAGCGAGTGAGGAG---ATGCAGAGGAAGGCAAAGA-ACAACTCTAGCGACCCAGGATGATCCGGGTGCCGGAAAACAGAAGCTGGAAAAAGG------AGATCTG-CCCCGGAAAGGAGGCATGGAAAGTGTAGATGTGGGTCCTCGAGGTGGCGTCGTAGAAGACTACCTCTCCGCCCTAGTAATCCACGCGGACGCCCACTTTGTTCGGACAGACCGGGAGATCCT----CCCGGGAACCGCTCTCGATGAGCGCCTGGCACTGGGAGCCGGTGCTGTGCAGCTCCACGAAGCCGGTCAAGGGCTCCAC-------CTCGAGGAAGCCCCGCCTGGGAACCAGCTCCAAGGCCAAGCCC-GGCACGCAGGCCCCGCCCCCGGGCCCTTGGAGCTCCG-CCTCCCAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30549724 408 + 173848474 GCACATCCCAAAGT----------GGGGCGAGAAGCGAGTGAGGAG---ATGCAGAGGAAGGCAAAGA-ACAACTCTAGCGACCCAGGGTGATCCGGGTGCCGGAAAACAGAAGCTGGAAAAAGG------AGATCTG-CCCCGGAAAGGAGGCATGGAAAGTGTAGATGTGGGTCCTCGAGGTGGCGTCGTAGAAGACTACCTCTCCGCCCTAGTAATCCACGCGGACGCCCACTTTGTTCGGACAGACCGGGAGATCCT----CCCGGGAACCGCTCTCGATGAGCGCCTGGCACTGGGAGCCGGTGCTGTGCAGCTCCACGAAGCCGGTCAAGGGCTCCAC-------CTCGAGGAAGCCCCGCCTGGGAACCAGCTCCAAGGCCAAGCCC-GGCACGCAGGCCCCGCCCCCGGGCCCTTGGAGCTCCG-CCTCCCAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     256709 409 +   2037526 GCACATCCCAAAGT----------GGGGCGAGAAGCGAGTGAGGAGGAGATGCAGAGGAAGGCAAAGA-ACAACTCTAGCGACCCAAGGTGATCCGGGTGCCGGAAAACAGAAGCTGGAAAAAGG------AGATCTG-CCCCGGAAAG--GGCATGGAAAGTGTAGATGTGGGTCCTCGAGGTGGCGTCGTAGAAGACTACCTCTCCGCCCTAGTAATCCACGCGGACACCCACTTTGTTCGGACAGACCGGGAGATCCT----CCCGGGAACCGCTCTCGATGAGCGCCTGGCACTGGGAGCCGGTGCTGTGCAGCTCCACGAAGCCGGTCAAGGGCTCCAC-------CTCCAGGAAGCCCCGCCTGGGAACCAGCTCCAAGGCCAAGCCC-AGCACGCAGGCCCCGCCCCCGGGCCCTTGGAGCTCCG-CCTCCCAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74923701 420 + 122973662 GCACATCCCAAAGTGGGGTTGT-GGGGGCGAGAAGCGAGTGAGGAGGAGATGCAGAGGAAGGCGAAGA-ACAACTCTATGGACCCAAGGTGATCCGGGTGCCGGAAAACAGATGCTGGAAAAAGG------AGATCTG-CCCCGGAAAGGAGGCATGGAAAGTGTAGATGTGGGTGCTCGAGGTGGCGTCGTAGAAGACTACCTCTCCGCCCTAGTAATCCACGCGGACTACCACTTTGTTCGGACAGACCGGGAGATCCT----CCCGGGAACCGCTCTCTGTGAGCGCCTGGCACTGGGAGCCGGTGCTGTACAGCTCCTCGAAGCCGGTCAAGGGCTCCAC-------CTCCAAGAAGCCCCGCCTAGGAACCAGCGCCAAGGCCACGCCC-AGCACGCAGGCCCCGCCCCCGGGCCCTTGGAGCCCCG-CCTCCCAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30802894 394 + 172585720 GCACATCCCAAAGTGGGCTGGT-GGCAGCGAGAAGCAAGTGAGGAGGAGATGCAGAGGAAGGCAAAGA-ACAACTCTAGGGACCCA---------GGGTGCCGGAAAAC--AAGCTGGAAAAAGG------AGATCTG-CCCCGGGAAGGAGGCATGGAAAGAGTAGATGTGGGGGCTAGAGGTGGCGTCGTAGAAGACTACTTCTCTGCCCTCGTAATCCATGTGGACACCCACTTTATTCGGAAAGACCGTGAGATCCT----CCCGGTAACCGCTCTCAGTGAGCGCCGGGCACTCGGA----------------GCCCGGAAGCCGGTCAAGGGCTCCAC-------CTCCAGGAAGCCCCGCCTAGGAACCAGCTTCAAGGCCACGTCC-AGCACGCAGGCCCCGCCCCCGGGCCCTTGGAGCCCCGCCCCCCCAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30092382 393 - 170955103 GCACATCCCAAAGTGGGCTGGT-GGCAGCGAGAAGCAAGTGAGGAGGAGATGCAGAGGAAGGCAAAGA-ACAACTCTAGGGACCCA---------GGGTGCCGGAAAAC--AAGCTGGAAAAAGG------AGATCTG-CCCCGGGAAGGAGGCATGGAAAGAGTAGATGTGGGGGCTAGAGGTGGCGTCGTAGAAGACTACTTCTCTGCCCTCGTAATCCATGTGGACACCCACTTTATTCGGAAAGACCGTGAGATCCT----CCCGGTAACCGCTCTCAGTGAGCGCCGGGCACTCGGA----------------GCCCGGAAGCCGGTCAACGGCTCCAC-------CTCCAGGAAGCCCCGCCTAGGAACCAGCTTCAAGGCCACGTCC-AGCACGCAGGCCCCGCCCCCGGGCCCTTGGAGCCCCG-CCCCCCAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     341666 411 +   1495729 GCACATCCCAAAGTGGTCTGGT-GGGGGCGAGGAGCAAGTGAGGAGGAGATGCAGAGGAAGGCAAAGA-ACAACTCTAGGGACCCA---------GGGTGCCGGAAAACAGAAGCTGGAAAAAGG------AGATCTG-CCCCAGGAAGGAGGCATGGAAAGTGTAGATGTGGGGGCTAGAGGTGGTGTCGTAGAAGACTACCTCTCCGCCCTCGTAATCCACGTGGACACCCACTTTGTTCGGACAGACCGGGAGATCCT----CCCGGGAACCGCTCTCGGTGAGCGCCGGGCACTCGGAGCCGGTGACGTGCAGCGCCCGGAAGCCGGTCAAGGGCTCCAC-------CTCCAGGAAGCCCCGCCTAGGAACCAGCTTCAAGGCCGCGTCC-AGCACACAGGCCCCGCCCCCGGGCCCTTGGAGCCCCG-CCCCCCAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     439567 411 -    863181 GCACATCCCAAAGTGGGCTGGT-GGGGGCGAGAAGCAAGTGAGGAGGAGATGCAGAGGAAGGCAAAGA-ACAACTCTAGGGACCCA---------GGGTGCCGGAAAACAGAAGCTGGAAAAAGG------AGATCTG-CCCCAGGAAGGAGGCATGGAAAGTGTAGATGTGGGGGCTAGAGGTGGCGTCGTAGAAGACTACCTCTCCGCCCTCGTAATCCACGTGGACACCCACTTTGTTCGGACAGACCGGGAGATCCT----CCCGGGAACCGCTCTCGGTGAGCGCCGGGCACTCGGAGCCGGCGATGTGCAGCGCCCGGAAGCCGGTCAAGGGCTCCAC-------CTCCAGGAAGCCCCGCCTAGGAATCAGCTTCAAGGCCACGTCC-AGCACGCAGGCCCCGCCCCCGGGCCCTTGGAGCCCCG-CCCCCCAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29591718 407 -  71996105 GCACATCCCAAAGCGGGCTGGT-GGGGGCGAGAAGCAAGTGAGGAGGAAATGCAGAGGAAGGCAAAGA-ACAACTCTAGGGACCCA---------GGGTGCCGGAAAACAGAAGCTGGAAAAAGG------AGATCTG-CCCCGGGAAGGAGGCATGGAAAGTGTAGATGTGGGGGCTAGAGGTGGC----TAGAAGACTACCTCTCCGCCCTCGTAATCCACGTGGACACCCACTTTGTTCGGACAGACCGGGACATCCT----CCCAGGAACCGCTCTCGGTGAGCGCCGGGTACTCGGAGCCGGTGATGTGCAGCGCCCGGAAGCCGGTCAAGGGCTCCAC-------CTCCAGGAAGCCCCGCCTAGGAACCAGCTTCAAGGCCACGTCC-AGCACGCAGGCCCCGCCCCCGGGCCCTTGGAGCCCCG-CCCCCCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     284345 411 -    735854 GCACATCCCAAAGTGGGCTGGT-GGGAGCGAGGAGCAAGTAAGGAGGAGATGCAGAGGAAGGCAAAGA-ACAACTCTAGGGACCCA---------GGGTGCCGAAAAACAGAAGCTGGAAAAAGG------AGATCTG-CCCCAGGAAGGAGGCATGGAAAGTGTAGATGTGGGGGCTAGAGGTGGCGTCGTAGAAGACTACCTCTCCGCCCTCGTAATCCACGTGGACACCCACTTTGTTGGGACAGACCGGGAGATCCT----CCCGGGAACCGCTCTCGGTGAGCGCCGGGCACTGGGAGCCGGTGATGTGCAGCGCCCGGAAGCCGGTCAAGGGCTCCAC-------CTCCAGGAAGCCCCGCCTAGGAACCAGCTTAAAGGCCACGTCC-AACACGCAGGCCCCGCCCCCGGGCCCTTGGAGCCCCG-CCCCCCAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     230057 411 -   1829203 GCACATCCCAAAGTGGGCTGGTGGGGGGCGAGAAGCAAGTGAGGAGGAGATGTAGAGGAAGGCAAAGA-ACAACTCTAGGGACCCA---------GGGTGCCGGAAAACAGAAGCTGGAAAAAGG------ATATCTG-TCCCGGGAAGGAGGCATGGAAAGTGTAGATGTGGGGGCTAGAGGTGGCGTCGTAGAAGACTACCTCTCTGCCCTCGTAATCCACGTGGACACCCACTTTGTTCGGACAGACCAGGAGATCCT----CCCGGGAACCGCTCTCGGTGGGCGCCGAGCACTCGGAGCCAGTGATGTGCAGCGCCGGGAAGCGGGACAAGGGCTCCAC-------CTCCAGGAAGCCCCGCCTAGAAACCAGCTTCAAGGCCACGTCC-AGCACGCAGGCCCCGCCCCCGGGCCCTTGGAGCCCCA--CCCCCAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30402490 409 + 171630274 GCATATCCCAAAGTCAGGTGGT-GGGGGCGCGAAGCGAGTGAGGAGGAGATGCAGAGGAAGACAAGGA-ACAACTCTAGGGGCCCAGGGTGATCTGGGTGCCAGAAAACAGAAGCTGGAAAAAGG---GGAAAATCTG-CCCCGGGAAGGAGGCATGGAAAGTGTAGATGTGGGTGCTTGACGTGGCGTCGCAGAAGACTACCTCTCCACCCTTCTAATCCACGCCGATGCCCAGTTTGTTTAGACAGACCTGGAGATCCT------------------TCAGTGAACGCCTGGCACTCGGACCCGGTGATATGCAACTCCCAGAAGTCGGTCAAGGGCTCCAC-------CTCCAGAAAGCCCCGCCTGGGAACCAACTCCGAGGCCACGCCC-AGCATGTAGGCCGGGTTCCCGGGACCTTGGAGCTCCG-CCTCCCAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           226383 390 +    515838 GCACATCCCAAAGTGAGGTGTT-GGGGGCGAGAAGGGAGTGGGGAGGAGATGCAGAGGAAGGCAAAGA-ACAACTCTAGGGACCCAGGGTGATCTGGGTGCCAGAAAACAGAAGCTGGAGAAAGG---GGAAGATCTG-CCCTGGGAAGGAGGCATGGAAAGTGTAGATGTGGGTGCTCGAGGTGGCATCGCAGAAGACTACCTCTCCACC---GTAATCCACGCCGAGGCCCAGTTTGTTTAGACAGACCTGGAGATCCT------------------TCAGGGAGCGCCTGGCACTGGGAGCCGGTGACGTGCAG---------------CAAAGGCTGCAC-------CTCCAGAAAGCCCCGCCTGGGAACCAGCTCCGAGGCCACGCCC-AGCATGTAGGCCCCG-CCCCGGAACCTTGGAGCTCCG-CCTCCCAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     857354 390 -   1771730 GCACATCTCAAAATGAGGTGGT-GGAGGCGAGACGCGAGTGAGGAGGAGATGCAGAGGAAGGCAAAGA-AAAACTCTAGGGACCCAGGGTGATCTGGGTGCCAGGAAACAGAAGCTGGAAAAAGG---GGAAGATCTG-CCCCGGGAAGGAGGCATGGAAAGTGTGGATGTGGGTGCTCGAGGGGGCGTCGCAGAGGACTACCTCTCCCCC---GTAATCCACGCCGAGGGCCAGTTTGTTTAGACAGACCTGGAGATCCT------------------TCAGTGAGCGCCTGGCACTGGGAGCCAGTGATGTGCAG---------------CAAAGGCTCCAC-------CTCCGGAAAGCCCCGCCTGGGGACCAGCTCCGAGGCCACGCCC-AGCATTTAGGCCCCG-CCCCGGAACCTTGGAGCTCCG-CCTCCCAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     350001 400 -    383796 GCACACCCCAAAGTGAGGTGGT-GGGGGCGAGAAGCGAGTGAGGAGGAGATGCAGAGGAAGGCAAAGA-ACAACTCTAGGGACCCAGGGTGATCTTGGTGCCAGAAAACAGAAGCTGGAAAAAGG---GGAAGATCTG-CCCCGGGAAGGAGGCATGGAAAGTGTAGATGTGGGTGCTCGAGGTGGCGTCGCAGAAGACTACCTCTCCACC---GTAATCCACGCCGAGGCCCAGTTTGTTTCA------CTGGAGATCCT------------------TCAGTGAGCGCCTGGCACTCGGAGCCGGTGATATGCAGCTCCCATAAATCGGTCAAAGGCTCCAC-------CTCCAGAAAGCCCCGCCCGGGAACCAGCTCCGAGGCCACGCCC-AGCATTTAGGCCCCGCCCCTGGGACCTTGGAGCTCCG-CCTCCCAGG
i aotNan1.NW_018496904v1   C 0 I 1179
s otoGar3.GL873550           276268 399 +  18854210 GCACCTTCTAAAGTAA-------GGGGGC--------AGCGAGGAGGAGGCAGAGGGGAAGGTAAAGA---AACCCTAGGGACTCAGGGTGACCTGGGTACTGGCAGACAGGTGCTAGGAAAAGG---GGAAGATCTGCCCCCAAGAACAAGACTTTGAAGGTGTAGATGTGG---------TTTGCGTCGTAGAAGAGTGTCTCCCCACACTTGTAATCCACGGAGAGGTCTACTTTCTACAGACGGACCGGGAGATCCT----GCCGCGCACCGCCCTCGGTGAGCGCCTGGCCCTTGGAGCAGGCGATGTGCAGCTTCCAGAAACCTGCAGAGGAATCCCC-------AACAAGGAAGCCCCTCCCAGACACTAGCTCCGAGGCCACGCCT-ACCACTCAGGTCACGCCCCCTGGCCCGCGGAGCTCCG-CCTCCCAGG
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58077496 408 -  94987271 -CTCATCCCGTCCTGAGTG----ATAGGTGGGAAGAGACTGAGGAACACACA-----------AGCGA-GCAGCCCTAAGGGCTCAGGGTGATATGGCTGCAGGCAACTTGGAGCCCGAAAAGGG---GGAAGACCTT-CCCGTCAAAGGAAGTTTGGAAAGTATAGATGTGTTTGCTAGTGATGGCATCATAGAAGACGACCTCTCCACAGTCATGATTCACATAGACACCCACTTTCTTAAGACAGACCTGGAGGTACT----CCTGGGCTTTACAATTGGTGAATGGCTGGCATCCAGAGGGCGAGATCCGCAGTGCCCATATGTAGCTCTGCGCGCTCACGGTTTGACTCTGG---GCCCCTC----GCGCCAACTCTGTAACCACGCCC-ACAATGCATGCCCCACCTGAGGGCCCCCGGATTTCTG-CCTCCCACA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26317632 335 +  26524999 GCACACCCCAAAGT---------GGGGGCGGC-----ACCGGGGAGGAAGCGGATAGGAAGGTAAAGAAACAGCCCTGGGG--TCAGGACCCTCTGGGGGCTCCAGAAAAAGAGCCCCCAAAAGGGATGGAGGCCCTG-ACCC--------------------GTGCATGGGGTCGCTCGCGGGGGCGTCGTGGAAGGCCGCCTC-CCGCGCTCGTAGTCCG-GCGGACGCTGGCTCTTCTTGGACGCCCCGGGAGACCCCCGACCCCACAAGC-----TCAGCCAGCACC---CACT---------------------TCTGGCTGCCCGCCCAGG------C-------CTCGGGGAGGCCTCG-----------------------AACTC-ACCA-GCAGCTCCCGCCCCCGGGCCCTCGGAGCCCCG-CCTCCCGGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            22273 395 -     45298 --GCACCCCCAggc---------gggggcg----gcgggggcggcgggggcccg---------------gcTCCTCTAGGGGCGCAGCGTGACCTGGGTGCCGGCGAACAGGAGCCGGAAGAAGG---GGAAGACGCG-CCCGGGGAAGGAGGCGTGGAAGGTGTAGACGTGGCCGCCCGTGGCGGCGTCGTGGAAGAGCACCTCCCCGCGCTCGTGGTCCACGCAGACGCGCAGCCTTCGCGGGCGCGCGGGCAGCTCCT----CGCGCTCGCCCGACTCGGCCAGCGCCTGGCACTCGGCGCCCGTCACGCGCAGCGCCCAGAAGCCGGCGCCGGGCTCGAG-------CAGCAGGTAgccgcgccgcgccgcgtgctccgcggcggcgccc-accacgcaggccccgccgtccgggccgcgcagcTCGG-CCTCCCAgg
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e proCoq1.NW_012149775v1     126514 511 -   1411461 I

a score=29873.000000
s hg38.chr6_GL000254v2_alt  1446300 3 +   4827813 CGC
s panTro5.chr6             30315672 3 + 175400573 CGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30550132 3 + 173848474 CGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     257118 3 +   2037526 CGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74924121 3 + 122973662 AGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30803288 3 + 172585720 CGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30092775 3 - 170955103 CGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     342077 3 +   1495729 CGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     439978 3 -    863181 CGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29592125 3 -  71996105 CGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     284756 3 -    735854 CGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     230468 3 -   1829203 CGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30402899 3 + 171630274 CGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           226773 3 +    515838 CGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     857744 3 -   1771730 CGC
i cebCap1.NW_016107755v1   C 0 I 1146
s otoGar3.GL873550           276667 3 +  18854210 AGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58077904 1 -  94987271 --C
i mm10.chr17               C 0 I 2
s canFam3.chr35            26317967 1 +  26524999 --C
i canFam3.chr35            C 0 I 1
s dasNov3.JH580105            22668 3 -     45298 ccc
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e proCoq1.NW_012149775v1     126514 511 -   1411461 I
e aotNan1.NW_018496904v1     350401 1179 -    383796 I

a score=258715.000000
s hg38.chr6_GL000254v2_alt  1446303 31 +   4827813 CGCGGCCGGAGCAAAGGCCC---AGCGAGCCCAG
s panTro5.chr6             30315675 31 + 175400573 CGCGGCCGGAGCAAAGGCCC---AGCGAGCCCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30550135 31 + 173848474 CGCGGCCGGAGCAAAGGCCC---AGCGAGCCCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     257121 31 +   2037526 CGCGGCCGGAGCAAAGGCCC---AGCGAGCCCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74924124 31 + 122973662 CGCTGCCGGAGCAAAGGCCC---AGCGAGCCCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30803291 31 + 172585720 CGCGGCCGTAGTAAAGGCCC---AGCGAGCCCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30092778 31 - 170955103 CGCGGCCGTAGTAAAGGCCC---AGCGAGCCCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     342080 31 +   1495729 CGCGACCGTAGTAAAGGCCC---AGCGAGCCCAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     439981 31 -    863181 CGCGGCCGTAGTAAAGGCCC---AGCGAGCCCAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29592128 31 -  71996105 TGCGGCCGTAGTTAAGGCCC---AGCGAGCCCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     284759 31 -    735854 CGCGGCCGTAGTAAAGGCCC---AGCGAGCCCAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     230471 31 -   1829203 CGCGGCCGTAGTAAAGGCCC---AGCGAGCCCAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30402902 34 + 171630274 ATCCGCCTGAGGAAAGGCCCCCTGGCGAGTCCAG
i calJac3.chr4             C 0 I 987
s saiBol1.JH378341           226776 33 +    515838 ATCTGCCTGAGGAAA-GCCCCCTGGCGAGCCCAG
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           276670 31 +  18854210 GGTGGCCAGAGGAGAAGCCA---GGAGAGTTTGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58077907 31 -  94987271 GGCGGCCTGAGGAGAGGCCT---GGGGAACCCCT
i mm10.chr17               I 2 C 0
s canFam3.chr35            26317969 31 +  26524999 GGAGGCCGGACGAGAGGCAG---GGCGAGCCCCG
i canFam3.chr35            I 1 I 2
s dasNov3.JH580105            22671 31 -     45298 ggcggcccgcggccacgccc---ggcgcgcccAG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e proCoq1.NW_012149775v1     126514 511 -   1411461 I
e aotNan1.NW_018496904v1     350401 1179 -    383796 I
e cebCap1.NW_016107755v1     857747 1146 -   1771730 I

a score=88602.000000
s hg38.chr6_GL000254v2_alt  1446334 9 +   4827813 CACTCAGCG
s panTro5.chr6             30315706 9 + 175400573 CACTCAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30550166 9 + 173848474 CACTCAGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     257152 9 +   2037526 CACTCAGCG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74924155 9 + 122973662 CACTCAGCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30803322 9 + 172585720 CACGCAGCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30092809 9 - 170955103 CACGCAGCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     342111 9 +   1495729 CACGCAGCG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     440012 9 -    863181 CACGCAGCG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29592159 9 -  71996105 CACGCAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     284790 9 -    735854 CACGCAGCG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     230502 9 -   1829203 CACGCAGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30403923 9 + 171630274 cacaCAGCT
i calJac3.chr4             I 987 C 0
s saiBol1.JH378341           226809 9 +    515838 CACCCAGCG
i saiBol1.JH378341         C 0 I 1411
s otoGar3.GL873550           276701 9 +  18854210 CACGCAGCG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58077938 9 -  94987271 CACACAGTG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26318002 9 +  26524999 CACCTTGCC
i canFam3.chr35            I 2 I 3
s dasNov3.JH580105            22702 9 -     45298 CACGCAGCG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e proCoq1.NW_012149775v1     126514 511 -   1411461 I
e aotNan1.NW_018496904v1     350401 1179 -    383796 I
e cebCap1.NW_016107755v1     857747 1146 -   1771730 I

a score=165212.000000
s hg38.chr6_GL000254v2_alt  1446343 24 +   4827813 GAACCTGTAGAAGCGTCGGGGGTT
s panTro5.chr6             30315715 24 + 175400573 GAACCTGTAGAAGCGTCGGGGGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30550175 24 + 173848474 GAACCTGTAGAAGCGTCGGGGGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     257161 24 +   2037526 GAACGTGTAGAAGCGTCGGGGGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74924164 24 + 122973662 GAACCGGTAGAAGAGTCGAGGGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30803331 24 + 172585720 GAACCGGTAGAAGAGTCGGTGGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30092818 24 - 170955103 GAACCGGTAGAAGAGTCGGTGGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     342120 24 +   1495729 GAACCGGTAGAAGCGTCGGTGGTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     440021 24 -    863181 GAAGCGGTAGAAGCGTCGGTGGTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29592168 24 -  71996105 GAACCGGTAGAAGCGTCGGTGGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     284799 24 -    735854 AAACCGGTAGAAGCGTCGGTGGTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     230511 24 -   1829203 GAACCGGTAGAGGCGTCGGTGGTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30403932 24 + 171630274 GAACTGGTCAAAGAGTCTGCAGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           228229 24 +    515838 GAACTGGCACAAGGGTCTGCAGTA
i saiBol1.JH378341         I 1411 C 0
s otoGar3.GL873550           276710 24 +  18854210 GTCTGGACAGAAATGCCCAGGATC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58077947 24 -  94987271 GAAAGGGTAGAATGGTCGAGGTTT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26318014 24 +  26524999 CCCCCGCGCGCAGCGTCTGCAGGT
i canFam3.chr35            I 3 C 0
s dasNov3.JH580105            22711 24 -     45298 GAACGGGTGGAAGCGCTCGGGGTC
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e proCoq1.NW_012149775v1     126514 511 -   1411461 I
e aotNan1.NW_018496904v1     350401 1179 -    383796 I
e cebCap1.NW_016107755v1     857747 1146 -   1771730 I

a score=90738.000000
s hg38.chr6_GL000254v2_alt  1446367 14 +   4827813 GCCCCGCTTCTGCG
s panTro5.chr6             30315739 14 + 175400573 GCCCCGCTTCTGCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30550199 14 + 173848474 GCCCCGCTTCTGCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     257185 13 +   2037526 GCCCCGCTTC-GCG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74924188 14 + 122973662 GCCCGGCTTCTGCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30803355 14 + 172585720 TCCCGGCTTCTTCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30092842 14 - 170955103 TCCCGGCTTCTTCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     342144 14 +   1495729 TCCCGGCTTCTTCG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     440045 14 -    863181 TCCCGGCTTCTTCG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29592192 14 -  71996105 TCCCGGCTTCTTCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     284823 14 -    735854 TCCCAGCTTCTTCG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     230535 14 -   1829203 TCCCGGCTTCTTCG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30403956 14 + 171630274 GCCCGGCTTCTGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           228253 14 +    515838 GCCCGGCTTCCACA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     858893 14 -   1771730 GCCCGGCTTCTACA
i cebCap1.NW_016107755v1   I 1146 C 0
s otoGar3.GL873550           276734 14 +  18854210 CACCGGCATATCCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58077971 14 -  94987271 TGCCTGCCTATTGG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26318038  7 +  26524999 -----GCCTGTG--
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            22735 14 -     45298 CGCGGGCGCCTCCG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e proCoq1.NW_012149775v1     126514 511 -   1411461 I
e aotNan1.NW_018496904v1     350401 1179 -    383796 I

a score=410985.000000
s hg38.chr6_GL000254v2_alt  1446381 37 +   4827813 AACCGCCCTGGGATGCGAGGTTCAGCGTCACTATCTC
s panTro5.chr6             30315753 37 + 175400573 AACCGTCCTGGGATGCGAGGTTCAGCGTCACTATCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30550213 37 + 173848474 AACCGTCCTGGGATGCGAGGTTCAGCGTCACTATCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     257198 37 +   2037526 AACCGCCCTGGGATGCGAGGTTCAGCGTCACTATCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74924202 37 + 122973662 AACCGCCCTGGGATGCGAGGTCCAGCGTCACTATCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30803369 37 + 172585720 AACTGCCCTGGGATGCGAGATCCAGAGTCACTATCTT
i rheMac8.chr4             C 0 I 3
s macFas5.chr4             30092856 37 - 170955103 AACTGCCCTGGGATGCGAGATCCAGAGTCACTATCTT
i macFas5.chr4             C 0 I 3
s macNem1.NW_012012100v1     342158 37 +   1495729 AACTGCCCTGGGATGCGAGATCCAGAGTCACTATCTT
i macNem1.NW_012012100v1   C 0 I 3
s cerAty1.NW_012002535v1     440059 37 -    863181 AACTGCTCTGGGATGCGAGATCCAGAGTCACTATCTT
i cerAty1.NW_012002535v1   C 0 I 3
s chlSab2.chr17            29592206 37 -  71996105 AACTGCCCTGGGATGCGAGATCCAGAGTCACTATCTT
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012107142v1     284837 37 -    735854 AACTGCCCTGGGATGCGAGATCCAGAGTCACTGTCTT
i manLeu1.NW_012107142v1   C 0 I 223
s colAng1.NW_012115577v1     230549 37 -   1829203 AACTGCCCTGGGATGCGAGATCCAGAGTCACTATCTT
i colAng1.NW_012115577v1   C 0 I 3
s calJac3.chr4             30403970 37 + 171630274 AACCAACCTAGGAGTCGAGGTCCAGCATCACTGTCTT
i calJac3.chr4             C 0 I 3
s saiBol1.JH378341           228267 37 +    515838 AACCACCCTGGGATTCGAGGTCCAGTGTCACTGTCTT
i saiBol1.JH378341         C 0 I 3
s cebCap1.NW_016107755v1     858907 37 -   1771730 AACCAGCCTGGGATTCGAGGTCCAGTGTCACTGTCTT
i cebCap1.NW_016107755v1   C 0 I 3
s aotNan1.NW_018496904v1     351580 37 -    383796 AACCACCCTGGGATTCGAGGTCCAGCGTCACTGTCTT
i aotNan1.NW_018496904v1   I 1179 I 3
s otoGar3.GL873550           276748 37 +  18854210 AACCGCCCCGAAGGATGAGGTCCAGAGTCACTGTCTT
i otoGar3.GL873550         C 0 I 3
s mm10.chr17               58077985 37 -  94987271 AAGCTTTTCCAGCTACAATATACAAGGTCACTTTCTT
i mm10.chr17               C 0 I 3
s canFam3.chr35            26318045 34 +  26524999 AGCCGGTCTTGGAG--GGGGTCCGGAGCCG-TGTCTT
i canFam3.chr35            C 0 I 1
s dasNov3.JH580105            22749 37 -     45298 GGTCGTCCGCGGCGGCCAGGTGGAGCGTCACCGTCTT
i dasNov3.JH580105         C 0 I 3
e micMur3.chr6               319141 313 + 123392446 I
e proCoq1.NW_012149775v1     126514 511 -   1411461 I

a score=960331.000000
s hg38.chr6_GL000254v2_alt  1446418 61 +   4827813 ATCCTGGGAAAGGATGAGATCCGGGTGGGCCGAGGCTGCGTCCAGTGTCACAGGGGCTGTG
s panTro5.chr6             30315790 61 + 175400573 ATCCTGGGAAAGGATGAGATCCGGGTGGGCCGAGGCTGCGTCCAGTGTCACAGGGGCTGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30550250 61 + 173848474 ATCCTGGGAAAGGATGAGATCCGGGTGGGCCGAGGCTGCGTCCAGTGTCACAGGGGCTGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     257235 61 +   2037526 ATCCTGGGAAAGGATGAGATCCGGGTGGGCCGAGGCTGCGTCCAGTGTCACAGGGGCTGTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74924239 61 + 122973662 ATCCTGGGAAAGTATGAGATCCGGGTGGGCCGAGGCTGCGTCCAGTGTCACAGGGGCTGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30803409 61 + 172585720 ATCCTGGGAAAGGATGAGGTCCGGGTGGGCCGAGGCTGCGTCCAGTGTCACAGGGGCTGTG
i rheMac8.chr4             I 3 C 0
s macFas5.chr4             30092896 61 - 170955103 ATCCTGGGAAAGGATGAGGTCCGGGTGGGCCGAGGCTGCGTCCAGTGTCACAGGGGCTGTG
i macFas5.chr4             I 3 C 0
s macNem1.NW_012012100v1     342198 61 +   1495729 ATCCTGGGAAAGGATGAGGTCCGGGTGGGCCGAGGCTGCGTCCAGTGTCACAGGGGCTGTG
i macNem1.NW_012012100v1   I 3 C 0
s cerAty1.NW_012002535v1     440099 61 -    863181 ATCCTGGGAAAGGATGAGGTCCGGGTGGGCCGAGGCTACGTCCAGTGTCACAGGGGCTGTG
i cerAty1.NW_012002535v1   I 3 C 0
s chlSab2.chr17            29592246 61 -  71996105 ATCCTGGGAAAGGATGAGGTCCGGGTGGGCCGAGGCTTCGTCCAGTGTCACAGGGGCTGTG
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012107142v1     285097 61 -    735854 ATCCTGGGAAATGATGAGGTCCGGGTGGGCCGAGGCTGCGTCCAGTGTCACAGGGGCTGTG
i manLeu1.NW_012107142v1   I 223 C 0
s colAng1.NW_012115577v1     230589 61 -   1829203 ATCCTGGGAAAGGATGAGGTCCGGGTGGGCCGAGGCTGCGTCCAGTGTCACAGGGGCTGTG
i colAng1.NW_012115577v1   I 3 C 0
s calJac3.chr4             30404010 55 + 171630274 ATCCTGGGAAAGGATGAGGTCCAAGTG------GGCTGCATCCAGTGTTACAGGGGCTGTG
i calJac3.chr4             I 3 C 0
s saiBol1.JH378341           228307 61 +    515838 ATCCTGGGAAAGGATGAGGTCCGAGTGGGCTGAGGCTGCATCCAGTGTTACAGGGGCTGTG
i saiBol1.JH378341         I 3 C 0
s cebCap1.NW_016107755v1     858947 61 -   1771730 ATCCTGGGAAAGGATGAGGTCTGAGTGGGCTGAGACTGCATCCGGTGTTACAGGGGCTGTG
i cebCap1.NW_016107755v1   I 3 C 0
s aotNan1.NW_018496904v1     351620 61 -    383796 ATCCTGGGAAAGGATGAGTTCCGAGTGGGCTGAGGCTGCATCCAGTGTCACAGGGGCTGTG
i aotNan1.NW_018496904v1   I 3 C 0
s proCoq1.NW_012149775v1     127025 60 -   1411461 ATCCTGGGAAAGGATGAGGACTTGG-GGGCCAAGGCTGCGGCCAGGGTCACAGGGGCTGTG
i proCoq1.NW_012149775v1   I 511 I 157
s otoGar3.GL873550           276788 61 +  18854210 ATCCTGGCAAAGGATGAGCTTTGAGTGAGCTGTGGCTCGGTGCAGGGTCACAGGGGCTGTG
i otoGar3.GL873550         I 3 I 3
s mm10.chr17               58078025 61 -  94987271 ATCCTGAGAAAAGGTGAGGTCTGGGTCAGCTGAGGACTTGTCCAGGGTCACAGGGACTGTG
i mm10.chr17               I 3 C 0
s canFam3.chr35            26318080 61 +  26524999 AGACTGGAGGATGAGGAGGTCCGGGTGAGCCGAGGTCACCTCCAGCGTCCTGGGGGCTGCG
i canFam3.chr35            I 1 C 0
s dasNov3.JH580105            22789 61 -     45298 GTCCTCGGAAAGGACGAGGTCCGGGTGCGCCGAGGCCGGGTCCAGGGTCACGGGGGCTGCG
i dasNov3.JH580105         I 3 C 0
e micMur3.chr6               319141 313 + 123392446 I

a score=555303.000000
s hg38.chr6_GL000254v2_alt  1446479 52 +   4827813 TGAAGATGAGGA----GAAAGAGGTGGCCAA-------------CCCCGGGTCAAGTTGTCCA---AACCCC
s panTro5.chr6             30315851 52 + 175400573 TGAAGATGAGGA----GAAAGAGGTGGCCAA-------------CCCCGGGTCAAGTTGTCCA---AACCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30550311 52 + 173848474 TGAAGATGAGGA----GAAAGAGGTGGCCAA-------------CCCCGGGTCAAGTTGTCCA---AACCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     257296 51 +   2037526 TGAAGATGAGGA-----AAAGAGGTGGCCAA-------------CCCCGGGTCAAGTTGTCCA---AACCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74924300 52 + 122973662 TGAAGATGAGGA----GAAAGAGATGGCCAA-------------CCCCGGGTCAAGTTGTCCA---AACCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30803470 52 + 172585720 TGAAGATGAGGA----GAAAGAGGTGGCCAA-------------CCCCGGGTCAAGATGTCCA---AACCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30092957 52 - 170955103 TGAAGATGAGGA----GAAAGAGGTGGCCAA-------------CCCCGGGTCAAGATGTCCA---AACCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     342259 52 +   1495729 TGAAGATGAGGA----GAAAGAGGTGGCCAA-------------CCCCGGGTCAAGATGTCCA---AACCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     440160 52 -    863181 TGAAGATGAGGA----GAAAGAGGTGGCCAA-------------CCACGGGTCAAGATGTCCA---AACCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29592307 52 -  71996105 TGAAGATGAGGA----GAAAGAGGTGGCCAA-------------CCCCAGGTCAAGATGTCCA---AACCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     285158 52 -    735854 TGAAGATGAGGA----GAAAGAGGTGGCCAA-------------CCCCGGGTCAAGATGTCCA---AACCCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     230650 52 -   1829203 TGAAGATGAGGA----GAAAGAGGTGGCCAA-------------CCCCGGGTCAAGATGTCCA---AACCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30404065 65 + 171630274 TGAAGATGAGGA----GAAAGAAGTGGCCAACCCCTTTTGACAACCCCGGATCAAGTTGTCCA---AACCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           228368 65 +    515838 AGAAGATGAGGA----GAAAGAAGTGGCCAACCCCTCTTGACAACCCTGGATCAAATTGTCCA---AACCCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     859008 64 -   1771730 AGAAGATGAGGA----GAAAGAAGTGGTCAACCCTTCTTGACAGCCCCGGATCCAGTTGTCC----AACCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     351681 65 -    383796 TGAAGATGAGGA----GAAAGAAGTGGCCAACCCCTCTTGACAACCCCAGGTCAAGTTGTCCA---AACCCC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           276852 54 +  18854210 TGAGGAGGAGGA----GAAAGAGGGGACCG--------------CTCTAGGTTAAGTCGTCCAGCCAACCCC
i otoGar3.GL873550         I 3 C 0
s mm10.chr17               58078086 54 -  94987271 GGAAGATAAAGAAGAGGAAAGAGGTA--TAG-------------CCTCAAGTCAAGTTGTCCA---GTCCCC
i mm10.chr17               C 0 I 1228
s canFam3.chr35            26318141 36 +  26524999 GGAGGTTGAGGA----G-GAGGGACGGCGAC-------------CCC---------TTGCCTC---------
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            22850 38 -     45298 ---------GGA----GAAGCAGGGG------------------CAGCGGGTCAGGGGGTCCA---gccccc
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e proCoq1.NW_012149775v1     127085 157 -   1411461 I

a score=948018.000000
s hg38.chr6_GL000254v2_alt  1446531 114 +   4827813 CTACC---TTCCTCTGATACCCCCGTCCCACCACCCGCCCCGCTCGATGCCGCCAG--AGAGGCTTTCTCTTCCCAG---TCACAGCCTTTGTGGTCCCCAGAGAAGTCTTAGGCCCGGCAC
s panTro5.chr6             30315903 114 + 175400573 CTGCC---TTCCTCTGATACCCCCGTCCCACCACCCGCCCCGCTCGATGCCGCCAG--AGAGGCTTTCTCTTCCCAG---TCACAGCCTTTGTGGTCCCCAGAGAAGTCTTAGGCCCGGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30550363 114 + 173848474 CTACC---TTCCTCTGATACCCCCGTCCCACCACCCGCCCCGCTCGATGCCGCCAG--AGAGGCTTTCTCTTCCCAG---TCACAGCCTTTGTGGTCCCCAGAGAAGTCTTAGGCCCGGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     257347 114 +   2037526 CTACC---TTCCTCTGATACCCCCGTCCCACCACCCGCCCCTCTCGATGCCGCCAG--AGAGGCTTTCTCTTCCCAG---TCACAGCCTTTGTGGTCCCCAGAGAAGTCTTAGGCCCGGCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74924352 113 + 122973662 CTACC---TTCCTCTGATACCCCCGTCCCACCCCCCGCCCCGCTCAATG-CACCAG--AGAGGCTTTCTCTTCCCAG---TCACAGCCTTTGTGGTCCCCAGAGAAGTCTCAGGCCCGGCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30803522 102 + 172585720 CCACC---TTCCTCTGACACC------------CGCGCCCCGCTCCATGAAGTCAG--AGAGGCTTTCTCTTCCCAG---TCACTGCCTTTGTGGTCCCCAGAGAAGTCTTAGGCCCGGCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30093009 102 - 170955103 CCACC---TTCCTCTGACACC------------CGCGCCCCGCTCCATGAAGTCAG--AGAGGCTTTCTCTTCCCAG---TCACTGCCTTTGTGGTCCCCAGAGAAGTCTTAGGCCCGGCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     342311 105 +   1495729 CTACCTTTTTCCTCTGACACC------------CGCTCCCCTCTCCATGAAGTCAG--AAAGGCTTTCTCTTCCCAG---TCACTGCCTTTGTGGTCCCCAGAGAAGTCTTAGGCCCGGCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     440212 105 -    863181 CTACCTTCTTCCTCTGACACC------------CGCTCCCCTCTCCATGAAGTCAG--AAAGGCTTTCTCTTCCCAG---TCACTGCCTTTGTGGTCCCCAGAGAAGTCTTAGGCCCGGCCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29592359 105 -  71996105 CTACCTTCTTCCTCTGACACC------------CGCGCCCCGCTCCATGAAGTCAG--AGAGGCTTTCTCTTCCCAG---TCACTGCCTTTGTGGTCCCCAGAGAAGTCTTAGGCCCGGCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     285210 102 -    735854 CTAC---CTTCCTCTGACACC------------CGCTCCCCGCTCCATGAAGTCAG--AGAGGCTTTCTCTTCCCAG---TCACTGCCTTTGTGGTCCCCAGAGAAGTCTTAGGCCGGGCGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     230702 102 -   1829203 CTACC---TTACTCTGACACC------------CGCGCCCCGCTCCATGAAGTCAG--AGAGGCTTTCTCTTCCCAG---TCACTGCCTTTTTGATCCCCAGAGAAGTCTTAGGCCCGGCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30404130 114 + 171630274 CTACC---TCCCTCTGACACCCCTGTCCCACTCCTAGCTCCACCCCATGTAGCCAG--AGAGGCTTTCTCTTCCCAG---TCACAGCCTTTGTGGTCCCCAGAGAAGTCTTAGGCCTGGCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           228433 114 +    515838 CTACC---TCCCTCTGATACCCCTATCCCACTCCTAGCTCCGCTCCATGCAGCCAG--AGAGGCTTTCTCTTCCCAG---TCACAGCCTTTGTGGTCCCCAGAAAAGTCTTACGCCCAGCCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     859072 114 -   1771730 CTACC---TCCCACTGACACCCCTGTCCCACTCCCAGCTCCGCTCCATGCAGCCAG--AGAGGCTTTCTCTTCCCAG---TCACAGCCTTTGCGGTCTCCAGAAAAGTCTTAGGCCCAGCGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     351746 114 -    383796 CTACC---TCCCTCTGACACCCCCGTCCAACGCCTAGCTCCGCTTCATGCAGCCAG--AGAGGCTTTCTCTTTTCAG---TCACAGCCTTTGTGGTCCCCAGAGAAGTCTTAGGCCCAGCCC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           276906 110 +  18854210 TTACC---TC------AGAGCCTCCGTCCGCAGCGCCCCTTCCTCCCATTAGCCAGAAAGAGGTTGCCTCTTTCCAG---TCTCAGCCTTTGTGGACCTTAGAAGAGTCCTAGGCCACGCCC
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26318177  75 +  26524999 CCAGC---TCCCGCTGGAAGC----------------ACCCGCAC-------------CGTGTCTTTGTCTTTGCGG---TCAC-GCCCTCCTTGTCCCCAGAGAGGTC--AG---------
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            22888  57 -     45298 ------------------------------------------------gccgccgg--g----------ctccccggggtgcgcagcgcgcgctggccgcggaggcgccctgggccc-----
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e proCoq1.NW_012149775v1     127085 157 -   1411461 I

a score=1054563.000000
s hg38.chr6_GL000254v2_alt  1446645 93 +   4827813 CGCCTCCT-----CCTCCTCAAAGTTAATCCCTAAATTTCAC----AATGTGTTG---TTCTGTGGGCGCAG-AGAGAAGTTCTTCATTGGTGGTGGTGGTGAGAT
s panTro5.chr6             30316017 93 + 175400573 CGCCTCCT-----CCTCCTCAAAGTTAATCCCTAAATTTCAC----AATGTGTTG---TTCTGTGGGCGCAG-AGAGAAGTTCTTCATTGGTGGTGGTGGTGAGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30550477 93 + 173848474 CGCCTCCT-----CCTCCTCAAAGTTAATCCCTAAATTTCAC----AATGTGTTG---TTCTGTGGGCGCAG-AGAGAAGTTCTTCATTGGTGGTGGTGGTGAGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     257461 93 +   2037526 CGCCTCCT-----CCTCCTCAAAGTTAATCCCTAAATTTCAC----AATGTGTTG---TTCTGTGGGCGCAG-AGAGAAGTTCTTCATTGGTGGTGGTGGTGAGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74924465 93 + 122973662 CGCCTCCT-----CCTCCTCAAAGTTAATCCCTAAATTTCAC----AATGTGTTG---TTCTGTGGGCGCAG-AGAGAAGTTCCTCATTGGTGGTGGTGGTGAGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30803624 93 + 172585720 CGCGTCCT-----CCTCCTCAAAGTTAATCCCTGAATTTCAC----AATGTGTTG---TTCTGTGGGCGCAG-AGAGAAGTTCCCCATTGGTGGTGGTGGTGAGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30093111 93 - 170955103 CGCGTCCT-----CCTCCTCAAAGTTAATCCCTGAATTTCAC----AATGTGTTG---TTCTGTGGGCGCAG-AGAGAAGTTCCCCATTGGTGGTGGTGGTGAGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     342416 93 +   1495729 CGCTTCCT-----CCTCCTCAAAGTTAATCCCTGAATTTCAC----AGTGTGTTG---TTCTGTGGGCGCAG-AGAGAAGTTCCCCATTGGTGGTGGTGGTGAGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     440317 93 -    863181 CGCGTCCT-----CCTCTTCAAAGTTAATCCCTGAATTTCAC----GATGTGTTG---TTCTGTGGGCGCAG-AGAGAAGTTCCCCATTGGTGGTGGTGGTGAGAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29592464 93 -  71996105 CGCGTCCT-----CCTCCTCAAAGTTAATCCCTGAATTTCAC----AGTGTGGTG---TTCTGTGGGCGCAG-AGAGAAGTTCCCCATTGGTGGTGGTGGTGAGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     285312 90 -    735854 CGCG---T-----CCTCCTCAAAGTTAATCCCTGAATTTCAC----AATGTGTTG---TTCTGTGGGCGCAG-AGAGAAGTTCCCCATTGGTGGTGGCGGTGAGAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     230804 93 -   1829203 CGCCTCCT-----CCTCCTGAAAGTTAATCCCTGATTTTCAC----AATGTGTTG---TTCTGTGGGCGCAA-AGAGAAGTTCCCCATTGGTGGTGGTGGTGAGAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30404244 84 + 171630274 TGCCTCGT-----CCTTCTCAAAGTTAATCCCTAAATTTCAC----AGTG---TG---TTCTGTGGATGCAG-AGAGAAGTT-CCCACTGGTGGTA-----GAGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           228547 88 +    515838 TGCCTCCT-----TCTTCTCAAAGTTAATCCCTACATTTCAC----AATGTGTTG---TTCTGTGGATGCAG-AGAGAAGTTCCCCATTGGTGGTA-----GAGAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     859186 88 -   1771730 TGCCTCCT-----CCTTCTCAAAGTTAATCCCTAAATTTCAC----AACGTGTTG---TTCTGTGGATGCAG-AGAGAAGTTCCTCATTGGTGGTA-----GAGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     351860 88 -    383796 TGCCTCCT-----CCTTCTCAAAGTTAATCCCTAAATTTCAC----AATGTGTTG---TTCTGTGGATGCAA-AGAGATGTTCCCCATTGGTGGTA-----GAGAT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     127242 96 -   1411461 CGCCCCCT-----CCTCCTCGAAGTTAATTGCTAAATTTCAC----AACGCGTAGTTGTTTGGTGGGCGTGG-AGAGCAGCTCCCCCCTGGTGGCGGTGGTGGGAG
i proCoq1.NW_012149775v1   I 157 C 0
s otoGar3.GL873550           277017 99 +  18854210 CACCCCCTTACCCCCACCTTGAAGTTAATTGCTAAATTTCCC----AATGCATTGT--TTTTGTGGGTGTAG-AGAGGAGCTCCACATtggtggtggtggtggtgg
i otoGar3.GL873550         I 1 I 9
s canFam3.chr35            26318252 74 +  26524999 --------------------------AACCCCTAAAGCTCACCGCGCACGTGCTG---TCCTGCGGGTGCAGAAGGGGAG---CTGAGGGGAGGTCCTGGGGAGGT
i canFam3.chr35            C 0 I 1
s dasNov3.JH580105            22945 83 -     45298 --tccccg-----ccTCCCGGGAATTGATCGCTAAATTTCAC----CAAGCGCCG---CCTTG-GGGTGTGG-GCGGCAGCTTCCC-------GTGATGGAGAGGG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319141 313 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I

a score=57951.000000
s hg38.chr6_GL000254v2_alt  1446738 4 +   4827813 CATT
s panTro5.chr6             30316110 4 + 175400573 CATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30550570 4 + 173848474 CATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     257554 4 +   2037526 CATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74924558 4 + 122973662 CATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30803717 4 + 172585720 CGTT
i rheMac8.chr4             C 0 I 436
s macFas5.chr4             30093204 4 - 170955103 CGTT
i macFas5.chr4             C 0 I 436
s macNem1.NW_012012100v1     342509 4 +   1495729 CGTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     440410 4 -    863181 CATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29592557 4 -  71996105 CGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     285402 4 -    735854 CATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     230897 4 -   1829203 CATC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30404328 4 + 171630274 CATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           228635 4 +    515838 CATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     859274 4 -   1771730 CATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     351948 4 -    383796 CATT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               319454 4 + 123392446 CATT
i micMur3.chr6             I 313 C 0
s proCoq1.NW_012149775v1     127338 4 -   1411461 CATT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           277125 4 +  18854210 AATT
i otoGar3.GL873550         I 9 C 0
s canFam3.chr35            26318327 4 +  26524999 CATG
i canFam3.chr35            I 1 C 0
s dasNov3.JH580105            23028 4 -     45298 CGTT
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58078140 1228 -  94987271 I

a score=495471.000000
s hg38.chr6_GL000254v2_alt  1446742 32 +   4827813 TCAACACCCGAAGATGAGACCATCTCTTCCTT
s panTro5.chr6             30316114 32 + 175400573 TCAACACCCGAAGATGAGACCATCTCTTCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30550574 32 + 173848474 TCAACACCCGAAGATGAGACCATCTCTTCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     257558 32 +   2037526 TCAACACCCGAAGATGAGACCATCTCTTCCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74924562 32 + 122973662 TCAACACCCGAAGATGAGACCATCTCTTCCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30804157 32 + 172585720 TCAACACCCGAAGATGAGACCATCTCTTCTTT
i rheMac8.chr4             I 436 C 0
s macFas5.chr4             30093644 32 - 170955103 TCAACACCCGAAGATGAGACCATCTCTTCTTT
i macFas5.chr4             I 436 C 0
s macNem1.NW_012012100v1     342513 32 +   1495729 TCAACACCCAAAGATGAGACCATCTCTTCCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     440414 32 -    863181 TCAACACCCGAAGATGAGACCATCTCTTCCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29592561 32 -  71996105 TCAACACCCGAAGATGAGACCATCTCTTCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     285406 32 -    735854 TCAACACCCGAAGATGAGACCATCTCTTCCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     230901 32 -   1829203 TCGACATCCGAAGATGAGACCATCTCTTCCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30404332 32 + 171630274 TCAACACCCAAATATGAGACCATCTCTTCCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           228639 32 +    515838 TCAACACCCAAAGATAAGACCATCTATTCCTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     859278 32 -   1771730 TCAACACCCAAAGATGAGACCATCTCTTCCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     351952 32 -    383796 TCAACACCCAAAGATGAGACCATCTCTTCTTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               319458 32 + 123392446 TCAACACCCAAAGATGAGACCATCCCCTCCTT
i micMur3.chr6             C 0 I 3437
s proCoq1.NW_012149775v1     127342 32 -   1411461 TCAACACCCAAAGATGAGGCCATCTCCTCCTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           277129 32 +  18854210 TCAACGCCGAAAGATGAGACCATCGCTTCCTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26318331 30 +  26524999 CTAACACC-GAAGCCGAG-CTGTCTCCTCTTT
i canFam3.chr35            C 0 I 3
s dasNov3.JH580105            23032 28 -     45298 TCAACAGCCAGGGCCGAGCCCACCCCTG----
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58078140 1228 -  94987271 I

a score=819617.000000
s hg38.chr6_GL000254v2_alt  1446774 80 +   4827813 GTCCATTTCCCGTGGCCCCTAATTC-CC-ATGTCTAAGACAAGAATTGAGTCTAGTATAAGAGG-GTCAAGGCTCAGACTTT-C
s panTro5.chr6             30316146 81 + 175400573 GTCCATTTCCCGCGGCCCCTAATTC-CC-ATGTCTAAGACAAGAATTGAGTCTAGTATAAGAGGTGTCAAGGCTCAGACTTT-C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30550606 81 + 173848474 GTCCATTTCCCGCGGCCCCTAATTC-CC-ATGTCTAAGACAAGAATTGAGTCTAGTATAAGAGGTGTCAAGGCTCAGACTTT-C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     257590 82 +   2037526 GTCCATTTCCCGCGGCCCCTAATTC-CC-ATGTCTAAGACAAGAATTGAGTCTAGTATAAGAGGTGTCAAGGCTCAGACTTTCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74924594 81 + 122973662 GTCCATTTCCCGCGGCCCCTAATTC-CC-ATGTCTAAGACAAGCATTGAGTCTAGTATAAGAGGTGTCGAGGCTCAGACTTT-C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30804189 81 + 172585720 GCCCATTTCCCGTGGCCCCTAATTC-CC-CTGTCTAAAACAAGAATTGAGTCTAGTATAAGAGATGTCGAGGCTCAGACTTT-C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30093676 81 - 170955103 GCCCATTTCCCGTGGCCCCTAATTC-CC-CTGTCTAAAACAAGAATTGAGTCTAGTATAAGAGATGTCGAGGCTCAGACTTT-C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     342545 81 +   1495729 GCCCATTTCCCGTGGCCCCTAATTC-CC-ATGTCTAAGACAAGAATTGAGTCTAGTATGAGAGATGTCAAGGCTCAGACTTT-C
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     440446 81 -    863181 GCCCTTTTCCCGTGGCCCCTAATTC-CC-ATGTCTAAGACAAGAATTGAGTCTAGTATAAGAGATGTCGAGGCTCAGACTTT-C
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29592593 81 -  71996105 GCCCATTTCCCGTGGCCCCTAATTC-CC-ATGTCTAAGACAAGAATTGAGTCAGGTATAAGAGATGTCGAGGCTCAGACTTT-C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     285438 81 -    735854 GCCCATTTCCCGTGGCCCCTAATTC-CC-ATGTCTAAGACAAGAATTGAGTCTGGTATAAGAGATGTCGAGGCTCAGACTTT-C
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     230933 81 -   1829203 GCCCATTTCCCGTGGCCCCTAATTC-CC-ATGTCTAAGACAAGAATTGACTCTAATATAAGAGATGTCGAGGCTCAGACTTT-C
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30404364 77 + 171630274 GCCCATTTCCCCTGACCCTTAATTC-CCAATATCT-----AAGAATTGCATCTAGTATAAGTGGTGTGGAGGCTCAGACTTT-C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           228671 77 +    515838 ACCCATTTCCCCTGGTCCCTAATTC-CCAATATCT-----AAGAATTGCATCTAGTATAAGTGGTGTTGAGGCTCAGACTTT-C
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     859310 76 -   1771730 GCCCATTTCCCC-GGTCCCTAATTC-CCAATATCT-----AAGAATTGCATCTAGTATAAGTGGTGTTGAGGCTCAGACTTT-C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     351984 77 -    383796 GCCCATTTCCCCTGTCCCTTAATTC-CCAATATCT-----AAGAATTGCATCTAGTATAAGTGGTGTCGAGGCTCAGACTTT-C
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     127374 82 -   1411461 CCCGGTTTTCCGTGGTCCGTAATTTCCC-ATATCTAAAACAAGACTTGGGGCTAGTGTAAGAGATGTCGAGGATCAGACTTT-C
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           277161 60 +  18854210 ACTCGTTTCCCGTTGTCTCTAGTTG-CC-ATATCTATAACAAGAGTTCGGGCTAGTATAAGA----------------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26318364 73 +  26524999 CCCCTTCTCCTGCAGGC---------CC-TCATCTAAAGCGGGATTTGGGACGAATGTGAGAGATGTCAAGGCTCAGACTTT-C
i canFam3.chr35            I 3 I 451
s dasNov3.JH580105            23060 50 -     45298 --------------------------------GCCCGCTCAAGGCTGGGGTCTGCTGCG-GAGATGCTGGGGCTCCGACTCC-C
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I

a score=819556.000000
s hg38.chr6_GL000254v2_alt  1446854 77 +   4827813 TGAGGGCCAGTAATTTTCTAAAGTGGAGTTCCTCAAACACAGGGATGAGTGAAAGTGTTGGAATACAAAAGGAGGAA
s panTro5.chr6             30316227 76 + 175400573 TGAGGGCCAGTAATTTTCTAAAGTGGAGTTCCTCAAACACAGGGATGAGTGAA-GTGTTGGAATACAAAAGGAGGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30550687 76 + 173848474 TGAGGGCCAGTAATTTTCTAAAGTGGAGTTCCTCAAACACAGGGATGAGTGAA-GTGTTGGAATACAAAAGGAGGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     257672 76 +   2037526 TGAGGGCCAGTAATTTTCTAAAGTGGAGTTCCTCAAACACAGGGATGAGTGAA-GTGTTCGAATACAAAAGGAGGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74924675 76 + 122973662 TGAGGGCCAGTAATTTTCTAAAGCGGAGTTCCTCAAACACAGGGATGAGTGAA-GTGTTGGAATACAAAAGGAGGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30804270 76 + 172585720 TGAGCGCCAGTAATTTTCTAAAGTGGAGTTCCTCAAACACAGGGATGAGTGAA-GTGTTGGAATATAAAAGGAGGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30093757 76 - 170955103 TGAGCGCCAGTAATTTTCTAAAGTGGAGTTCCTCAAACACAGGGATGAGTGAA-GTGTTGGAATATAAAAGGAGGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     342626 76 +   1495729 TGAACGCCAGTAATTTTCTAAAGTGGAGTTCCTCAAACACAGGGATGAGTGAA-GTGTTGGAATACAAAAGGAGGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     440527 76 -    863181 TGAGCGCCAGTAATTTTCTAAAGTGGAGTTCCTCAAACACAGGGATGAGTGAA-GTGTTGGAATACAAAAGGAGGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29592674 76 -  71996105 TGAGCGCCAGTAATTTTCTAAAGTGGAGTTCCTCAAACACAGGGATGAGTGAA-GTGTTGGAATACAAAAGGAGGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     285519 76 -    735854 TGAGCGCCAGTAATTTTCTAAAGTGGAGTTCCTAAAACACAGGGATGAGTGAA-GTGTTGGAATACAAAAGGAGGAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     231014 76 -   1829203 TGAGCGCCAGTAATTTTCTAAAGTGGAGTTCCTCAAACACAGGGATGAGTGAA-GTGTTGGAATACAAAAGGAGGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30404441 76 + 171630274 TGAGCTCCAGTAATTTTCTAAAAGGGAGTTCCTCAAACACAGGGATGAGTGAA-GTGTTGAAATATGAAAGGAGGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           228748 76 +    515838 TGAGCTCCAGTAATTTTCTAAAATGGAGTTCCTCAAACACAGGGATGAGTGAA-CAGTCACcacacacacacacaca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     859386 76 -   1771730 TGAGCTCCAGTAATTTTCTAAAATGGAGTTCCTCAAACACAGGGATGAGTGAC-GTGTTGGAATACAAAAGGAGGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     352061 76 -    383796 TGAGCTCCAGTAATTTTCTAAAATGGAGTTCCTCAAACATGGGGATGAGTGAA-GTGTTGGAATACAAAAGGAGGAA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     127456 76 -   1411461 TGAGCGCGAGTCATATTCCAAAGTGGAGTCCCTCAAACACAGGGATGAGTAAG-GTGTTGGAATACAGGAGGAGGAA
i proCoq1.NW_012149775v1   C 0 I 816
s otoGar3.GL873550           277221 38 +  18854210 -----------------------CGGAGCTA---------------GAGGAAG-GTGTTAGAATACAGAAGAAGGAA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            23110 21 -     45298 ---------------------------------CGAGCTCAGGCACTGGGGGA-G----------------------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=307885.000000
s hg38.chr6_GL000254v2_alt  1446931 48 +   4827813 TAGTCAT-------------CCCCCGCCACACACACATACA--CTTTTACTAGGATTCCACGT---
s panTro5.chr6             30316303 46 + 175400573 TAGTCAT-------------CCCCCGCCACACACACA--CA--CTTTTACTAGGATTCCACGT---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30550763 46 + 173848474 TAGTCAT-------------CCCCCGCCACACACACA--CA--CTTTTACTAGGATTCCACGT---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     257748 47 +   2037526 TAGTCAT------------CCCCCCGCCACACACACA--CA--CTTTTACTAGGATTCCACGT---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74924751 46 + 122973662 TAGTCAT-------------CCCCCGCCACACACACA--CA--CTTTTGCTAGGATTCCACGT---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30804346 48 + 172585720 TAGTCAT-------------CCCCTGCCACACACACA--CACTCTTTTACCAGGATTCTACGT---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30093833 48 - 170955103 TAGTCAT-------------CCCCTGCCACACACACA--CACTCTTTTACCAGGATTCTACGT---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     342702 46 +   1495729 TAGTCAT-------------CCCCCGCCACACACACA--CA--GTTTTACCAGGATTCTACGT---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     440603 46 -    863181 TAGTCAT-------------CCCCCGCCACACACACA--CA--CTTTTACCAGGATTCTACGT---
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29592750 46 -  71996105 TAGTCAT-------------CCCCCGCCACACACACA--CA--CTTTTACCGGGATTCTACGT---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     285595 46 -    735854 TCGTCAT-------------CCCCCGCCACACACACA--CA--CTTTTACCAGGATTCTACGT---
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     231090 46 -   1829203 TAGTCAT-------------TCCCCGCCACACACACA--CA--CTTTTACCAGGAGTCTACGT---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30404517 37 + 171630274 CAGTCAC----------------------CACACACA--CA--CTTCTACTAGGATTCCACGT---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           228824 35 +    515838 cacacac---------------------acacacaca--ca--cTT---CTAGGATCCCACGT---
i saiBol1.JH378341         C 0 I 335
s cebCap1.NW_016107755v1     859462 40 -   1771730 CAGTcac----------------cacacacacacaca--ca--cTT---CTAGGATCCCACGT---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     352137 56 -    383796 CAGTCACcacacacacacacacacacacacacacaca--ca--cTT---CTAGGATTCCACGT---
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           277259 46 +  18854210 TAGACAG------------AACCATGCCCCCCATACA--CA--CTT-TATGGGATTTAGATAT---
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            23131 36 -     45298 --------------------CCCCAGGCAGGGACACG--GC--------CGAGGAGGGGGCACCCT
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e proCoq1.NW_012149775v1     127532 816 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=2957751.000000
s hg38.chr6_GL000254v2_alt  1446979 302 +   4827813 TCAGTCGCAGTTTA-TTAAAGTTAGAAGTGTC--TCCATCCACCCCCTACAGAGGCTTGC---GTGG---TGGTTCCAG--TCTGCTAAATATTTCAGAATGGGGACCTCATTCTATCTACTGATTTATCAAATC-----------------TCATTAATTAATTTC-CCTTGCT-GATATGAGGGGTTGGGAGAGAAGGGGGACGTGGGAATGTAAGGAAGAGCGAGAGTGGTCGGGCTCATGGGGTTTGATGGACTGTGACCCAGGCTGGC-GTTGCTCCTCTCCGGATTTCACTCCTGGC------TGAACTGGTGCCTTCGGTAAACAGCTGCTT
s panTro5.chr6             30316349 302 + 175400573 TCAGTCACAGTTTA-TTAAAGTTAGAAGTGTC--TCCATCCACCCCCTACAGAGGCTTGC---GTGG---TGGTTCCAG--TCTGCTAAATATTTCAGAATGGGGACCTCATTCTATCTACTGATTTATCAAATC-----------------TCATTAATTAATTTC-CCTTGCT-GATATGAGGGGTTGGGAGAGAAGGGGGACGTGGGAATGTAAAGAAGAGCGAGAGTGGTCGGGCTCATGGGGTTTGATGGACTGTGACCCAGGCTGGC-GTTGCTCATCTCTGGATTTCACTCCTGGC------TGAACTGGTGCCTTCGGTAAACAGCTGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30550809 302 + 173848474 TCAGTCACAGTTTA-TTAAAGTTAGAAGTGTC--TCCATCCACCCCCTACAGAGGCTTGC---GTGG---TGGTTCCAG--TCTGCTAAATATTTCAGAATGGGGACCTCATTCTATCTACTGATTTATCAAATC-----------------TCATTAATTAATTTC-CCTTGCT-GATATGAGGGGTTGGGAGAGAAGGGGGACGTGGGAATGTAAAGAAGAGCGAGAGTGGTCGGGCTCATGGGGTTTGATGGACTGTGACCCAGGCTGGC-GTTGCTCGTCTCTGGATTTCACTCCTGGC------TGAACTGGTGCCTTCGGTAAACAGCTGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     257795 301 +   2037526 TCAGTCACAGTTTA-TTAAAGTTAAAAGTGTC--TCCATCCACCCCCTACAGAGGCTTGC---GTGG---TGGTTCCAG--TCTGCTAAATATTTCAGAATGGGGACCTCATTCTATCTACTGATTTATCAAATC-----------------TCATTAATTAATTTC-TCTTGCT-GATATGAGGGGTTGGGAGAGAAGGGGGACGTGGGAATGTAA-GTAGAGCGAGAGTGGTCGGGCTCATGGGGTTTGATGGACTGTGACCCAGGCTGGC-GTTGCTCGTCTCTGGATTTCACTCCTGGC------TGAACTGGTGCCTTCGGTAAACAGCTGCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74924797 302 + 122973662 TCAGTCACAGTTTA-TTAAAGTTAGAACTGTC--TCCATCCACCCACTACAGAGGCTTGC---GTGG---TGGTTCCAG--TCTGCTAAATATTTCAGAATGGGGACCTCATTCTATCTACTGATTTATCAAATC-----------------TCATTAATTAATTTC-CCTTGCT-GATATGAGGGGTTGGGAGAGAAGGGGGACGTGGGAATGTAAGGAAGAGCGAGAGTGGTCGGGCTCATGGGGTTTGATGGACTGTGACCCAGGCTGGC-GTTGCTCATCTCTGGACTTCACTCCTGGC------TGAACAGTTGCCCTCGGTAAACAGCTGTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30804394 302 + 172585720 TCAGTCACAGTTTATTTAAAGCTAGAAGTGTC--TCCATCCACCCATTACAGAGGCTTGC---GTGG---TGGTTCCAG--TCTGCTAAATATTTCAGAATGGGGG-CTCATTCTGTCTACTGATTTATCAAATC-----------------GCATTAATTAATTTC-CCTTGCT-GATATGAGGGGTTGGGAGAGAAGGGGGATGTGGGAATGTAAGGAAGAGCGAGAGTGGGCGGGCTTATGGGGTTTGACGGACTGTGACCCAGGCTGGC-CTTGCTCATCTCTGGACTTCACTGCTGGC------TGAACTGGTGCCCTCGGTAAACAGCTGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30093881 302 - 170955103 TCAGTCACAGTTTATTTAAAGCTAGAAGTGTC--TCCATCCACCCATTACAGAGGCTTGC---GTGG---TGGTTCCAG--TCTGCTAAATATTTCAGAATGGGGG-CTCATTCTGTCTACTGATTTATCAAATC-----------------GCATTAATTAATTTC-CCTTGCT-GATATGAGGGGTTGGGAGAGAAGGGGGATGTGGGAATGTAAGGAAGAGCGAGAGTGGGCGGGCTTATGGGGTTTGACGGACTGTGACCCAGGCTGGC-CTTGCTCATCTCTGGACTTCACTGCTGGC------TGAACTGGTGCCCTCGGTAAACAGCTGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     342748 300 +   1495729 TCAGTCACAGTTTATTTAAAGCTAGAAGTGTC--TCCATCCACCCATTACAGAGGCTTGC---GTGG---TGGTTCCAG--TCTGTTAAATATTTCAGAATGGGGG-CTCGTTCTGTCTACTGATTTATCAAATC-----------------GCATTAATTAATTTC-CCTTGCT-GATATGAGGGGTTGGGAGAGAAGGGGGATGTGGGAATGTAAGGAAGAGAGAGAGTGGGCGGGCTTATGGGGTTTGACGGACTGTGACCCA--TTGGC-GTTGCTCATCTCTGGACTTCACTGCTGGC------TGAACTGGTGCCCTCGGTAAACAGCTGCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     440649 300 -    863181 TCAGTCACAGTTTATTTAAAGCTAGAAGTGTC--TCCATCCACCCATTACAGAGGCTTGC---GTGG---TGGTTCCAG--TCTGCTAAATATTTCAGAATGGGGA-CTCATTCTGTCTACTGATTTATCAAATC-----------------GCATTAATTAATTTC-CCTTGCT-GATATGAGGGGTTGGGAGAGAAGGGGGATGTGGGAATGTAAGGAAGAGCGAGAGTGGGCGGGCTCATGGGGTTTGACGGACTGTGACCCA--TTGGC-GTTGCTCATCTCTGGACTTCACTGCTGGC------TGAACTGGTGCCCTCGGTAAACAGCTGCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29592796 302 -  71996105 TCAGTCACAGTTTATTTAAAGCTAGAAGTGTC--TCCATCCACCCATTACAGAGGCTTGC---GTGG---TGGTTCCAG--TCTGCTAAATATTTCAGAATGGGGA-CTCATTCTGTCTACTGATTTATCAAATC-----------------GCATTAATTAATTTC-CCTTGCT-GATATGAGGGGTTGGgagagaagagggatgtgggaatgtaaggaagagcgagagtgggaGGGCTCATGGGGTTTGACGGACTGTGACCCAGGCTGGC-CTTGCTCATCTCTGGACTTCACTGCTGGC------TGAACTGGTGCCCTCGGTAAACAGCTGCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     285641 302 -    735854 TCAGTCACAGTTTATTTAAAGCTAGAAGTGTC--TCCATCCACCCATTACAGAGGCTTGC---GTGG---TGGTTCCAG--TCTGTTAAATATTTCAGAATGGGGA-CTCATTCTGTCTACTGATTTATCAAATC-----------------GCATTAATTAATTTC-CCTTGCT-GATATAAGGGGTTGGGAGACAAGGGGGATGTGGGAATGTAAGGAAGAGCGAGAGTGGGCGGGCTCATGGGGTTTGACGGACTGTGACCCAGGCTGGC-CTTGCTCATCTCTGGACTTCACTGCTGGC------TGAACTGGTGCCCTCGGTAAATAGCTGCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     231136 301 -   1829203 TCAGTCGCAGTTTA-TTAAAGCTAGAAGTGTC--TCCATCCACCCATTACAGAAGCTTGC---GTGG---TGGTTCCAG--TCTGCTAAATATTTCAGAATGGGGG-CTCATTCTGTCTACTGATTTATCAAATC-----------------GCATTAATTAATTTC-CCTTGCT-GATATGAGGGGTTGGGAGAGAAGGGGGATGTGGGAATGTAAGGAAGAGCGAGAGTGGGCGGGCTCATGGGGTTTGACGGACTGTGACGCAGGCTGGC-CTTGCTCATCTCTGGACTTCACTGCTGGC------TGAACTGGTGCCCTCGGTAAACAGCTGCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30404554 295 + 171630274 TCAGTCACAGTTTA-TTAAAGCTAGAAG----------TCACCCCC-TACAGAGGCTTGC---ATAG---TGCTTTTAGTTTCTGCTAAATATTTCAGAAAGGGGACCTCATTCTATCTACTGATTTATCCAATC-----------------TCATTAATTAATTTC-CCTTGCT-GATGTGAGGAGTTGAGAGAGCTGGAGAATGTGGGAATGTACGGAAGAGTGAGAGTGGTCTGTTTCAT-GGGTTTGACAGACTGTGACCCAGGCCAGCGGATGGTCATCTCTGGACTTCCCGCCTGGC------TGAACTGGTGCCCTCGATAAACAGCTGCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           229194 303 +    515838 TCAATCACAGTTTA-TTAAAGCTAGAAGTGTC--TCCATCCACCCC-TACAGAGGCTTGC---ATGG---TGGTTCCAGTTTCTGCTAAGTATTTCAGAATGGGGACCTCATTCTACCTACTGATTTATCCAATC-----------------ACATTAATTAATTTC-CCTTGCT-GATGTGAGGGGTTGGGAGAGCTGGAGAATGTGGGAATGTAAGGAAGAGTGAGAGTGGTCGGGCTCAT-GGGTTTGACGGACTGTGACCCAGGTCGGCAGATGCTCATCTCTGGACTTCACGCCTGGC------TGAACTGGTGCCCTCCGTAAACAGCTGCTT
i saiBol1.JH378341         I 335 C 0
s cebCap1.NW_016107755v1     859502 303 -   1771730 TCAATCACAGTTTA-TTAAAGCTAGAAGTGTC--TCCATCCACCCCTTACAGAGGCTTGC---ATGg---tggttccagtttctgctaaatatttcagaacggggacctcattctatctactgatttatccaatc-----------------tcattAATTAATTTC-CCTTGCT-GATGTGAGGGGTTGAGAGAGCTGGAGAATGTGGGAATGTAAGGAAGAGTGAGAGTGGTCGTGCTCAT-GGGTTTGACGGACTGTGACCCAGGTC-GCAGATGCTCGTCTCTGGACTTCACGCCTGGC------TGAACTGGTGCCCTCCATAAACAGCTGCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     352193 304 -    383796 TCAATCACAGTTTA-TTAAAGCTAGAAGTGTC--TCCATCCACCCCCTACAGAGGCTTGC---ATGG---TGGTTCCAGTTTCTGCTAAATATTTCAGAACGGGGACCTCATTCTGTCTACTGATTTATCCAATC-----------------TCATTAATTAATTTC-CCTTGCT-GATGTGAGGGGTTGAGAGAGCTGGAGAATGTGGGAATGTAAGGAAGAGTGAGAGTGGTCGTGCTCAT-GGGTTTGACGGACTGTGACCGAGGCCGGCAGTTGTTCATCTCTGGACTTCAAGCCTGGC------TGAACTGATGCCCTCGATAAACAGCTGCTT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           277305 279 +  18854210 TGAGTCACT------TTAAAGCTAG-----------------------ACAAAAGCTTTTGTAGTAG---TGGTTCCAGCTTCCGCTAAAGATTTAGGAATGGGGACCTCGTCCTATTTCCTGATTTGTTATCTCATCTCAAAACTTTTACTTCAATATTTAATTTTGCCTTGTTGGATGTGAGGCATTGGGAGAGACGGAAGATCTGGGAATGTGA---------------------------GGGACTGAGAGATTGTGACCTAGCCAGGC-CTTACTCATCTCTGGACCCCATATCTGGTGGTCGGTAACCACGCTGCTTTGGTAAATAGCTATTT
i otoGar3.GL873550         C 0 I 192
s dasNov3.JH580105            23167 190 -     45298 GGCGTCCCGGCTGA-TCAGGTTCGGAAGGGCTGGTCCTCGCCCCCGCT-----GGCCTGG---GCAGCGCTGGTTCCAGGCTCTGCTGGAGCGCCTGGAATGGGGGCCT------------------------GC-----------------GC------TAAGCTC-CCGAGCA-GG-ACGTCGGGGTTGGAGAGGCGGAGGGTGTGGAAA------------------------------------------------GGCCCCGGGTGGC-----------------------TCCTGAC------TGAGC-------------AAACCGGCGTTT
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e proCoq1.NW_012149775v1     127532 816 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=871486.000000
s hg38.chr6_GL000254v2_alt  1447281  87 +   4827813 ------AAAGAGTGCG--------------GGGACTGCTGCAGGGACTTCCTTTTTCCACTAGGCGGCACCACAGCCAAAGTGATAAG---AAGTCAAGCGT-GGGGCGGG
s panTro5.chr6             30316651  87 + 175400573 ------AAAGAGTGCG--------------GGGACTGCTGCAGGGACTTCCTTTTTCCACTAGGCGGCACCACAGCCAAAGTGATAAG---AAGTCAAGCGT-GGGGCGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551111  87 + 173848474 ------AAAGAGTGCG--------------GGGACTGCTGCAGGGACTTCCTTTTTCCACTAGGCGGCACCACAGCCAAAGTGATAAG---AAGTCAAGCGT-GGGGCGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258096  86 +   2037526 ------AAAGAGTGC---------------GGGACTGCTGCAGGGACTTCCTTTTTCCACTAGGCGGCACCACAGCCAAAGTGATAAG---AAGTCAAGCGT-GGGGAGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925099  87 + 122973662 ------AAAGAGTGAG--------------GGGACTGCTGCAGGGGCTTCCTTTTTCCACTAGGCGGCACCACAGCCAAAGTGATAAG---AAGTCAAGCGT-GAGGCGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30804696  87 + 172585720 ------AAAGAGTGCG--------------GGGACTGCTGCAGGGACTTCCTTTTTCCACTAGGCGGCACCACAGCCAAAGTGATAAG---AAGTCAAGCGT-GGGGCGGG
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             30094183  87 - 170955103 ------AAAGAGTGCG--------------GGGACTGCTGCAGGGACTTCCTTTTTCCACTAGGCGGCACCACAGCCAAAGTGATAAG---AAGTCAAGCGT-GGGGCGGG
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     343048  84 +   1495729 ------AAAGAGTGCG--------------GGGACTGCTGCAGGGACTTCCTTTTTCCACTAGGCGGCACCACAACCAAAGTGAT------AAGTCAAGAGT-GGGGCGGG
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     440949  88 -    863181 ------AAAGAGTGCG--------------GGGACTGCTGCAGGGACTTCCTTTTTCCACTAGGCGGCACCACAGCCAAAGTGATAAG---AAGTCAAGCGTGGGGGCAGC
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29593098  87 -  71996105 ------AAAGAGTGCG--------------GGGACTGCTGCAGGGACTTTCTTTTTCCACTAGGCGGCACCACAGCCAAAGTGATAAG---AAGTCAAGCGT-GGGGCGGG
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1     285943  87 -    735854 ------AAAGAGGGCG--------------GGGACTGCTGTAGGGACTTCCTTTTTCCACTAGGCGGCACCACAACCAAAGTGATAAG---AAGTCAAGCGT-GGGGCGGG
i manLeu1.NW_012107142v1   C 0 I 1
s colAng1.NW_012115577v1     231437  87 -   1829203 ------AAAGAGTGCG--------------GGGACTGCTGCAGGGACTTCCTTTTTCCACTAGGCGGCACCACAGCCAAAGTGATAAG---AAGTCAAGCGT-GGGGCGGG
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30404849  85 + 171630274 --------AGAGTGCA--------------CGGACTGCTGCAGGGACTTCCTTTCTCCACTAGGCGGCACCACAGCCAAGGCGATAAG---AATGCAAGCGT-GGGGCGGG
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           229497  82 +    515838 --------AGAGTGCC----------------GGCCGCTGTAGGGGCTTCCCTTCTCCACTAGGCGGCACCAAAGCCAAAGCGATAGG---AACGCAAGC-T-GGGGCGGG
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     859805  85 -   1771730 --------AGAGTGCG--------------CGGGCCGCTGCAGGGGCTCCCTTTCTCCACTAGGCGGCACCACAGCCAAAGCGATAAG---AACACAAGCGT-GGGGCGGG
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496904v1     352497  85 -    383796 --------GGAGTGCA--------------CGGACTGCTGCAGGGACTTCCTTTCTCCATTAGGCGGCACCACAGCCAAAGCGATAAG---AACGCAAGCGC-AGGGCAGG
i aotNan1.NW_018496904v1   C 0 I 5
s otoGar3.GL873550           277776 102 +  18854210 ------aaaaaaGGCGGAGAGAAGCAAAGGGAGACTGCTGTAGAGACTTCCTTTATCCACTAGGGAGCACCACAGCCAAAGCGATAAGAAAAAGTCAAGCGT-AGGACA--
i otoGar3.GL873550         I 192 C 0
s dasNov3.JH580105            23357  70 -     45298 AGAAAGGAGAAGCACG--------------AGGGCACGGGGCGGGGC------------CGGAGGGGCACCTCGGCCCAGGCGACGCC---------------GGGACCGG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e proCoq1.NW_012149775v1     127532 816 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=80754.000000
s hg38.chr6_GL000254v2_alt  1447368 10 +   4827813 TGGCTGGAGA
s panTro5.chr6             30316738 10 + 175400573 TGGCTGGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551198 10 + 173848474 TGGCTGGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258182 10 +   2037526 TGGCTGGAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925186 10 + 122973662 TGGCTGGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30804784 10 + 172585720 TGGCTGGAGA
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30094271 10 - 170955103 TGGCTGGAGA
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     343133 10 +   1495729 TGGCTGGAGA
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     441038 10 -    863181 TGGCTGGAGA
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29593186 10 -  71996105 TGGCTGGAGA
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1     286031 10 -    735854 TGGCTGGAGA
i manLeu1.NW_012107142v1   I 1 C 0
s colAng1.NW_012115577v1     231525 10 -   1829203 TGGCTGGAGA
i colAng1.NW_012115577v1   I 1 C 0
s calJac3.chr4             30404935 10 + 171630274 TGGCTGAAAG
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           229580 10 +    515838 TGGCTGAAAG
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     859891 10 -   1771730 TGGCTGAAAG
i cebCap1.NW_016107755v1   I 1 C 0
s dasNov3.JH580105            23427  3 -     45298 CGG-------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e proCoq1.NW_012149775v1     127532 816 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I
e otoGar3.GL873550           277878  0 +  18854210 C
e aotNan1.NW_018496904v1     352582  5 -    383796 I

a score=1933135.000000
s hg38.chr6_GL000254v2_alt  1447378 223 +   4827813 TTGTCTCTTCCCCTCCTTTTGCTCAAGAATTC----GTCCATTCCTTCTCCAACTCTCTTCACCA------CCACCCCCGCCCCCATCTCCACTCTCAGTAGCCCGAGCCCT-C------------CCATTCTCCACTCCTTCGACCCAATTCCACTAAGTCAAGAACCGTGGTCGGTCTCAGCCACTCACTCAGCGCCACTC-TATGCTCCGAAGTCCGTGTAGCACCACCGCTCCCCGTGTTCTC
s panTro5.chr6             30316748 223 + 175400573 TTGTCTTTTCCCCTCCTTTTGCTCAAGAACTC----GTCCATTCCTTCGCCAACTCTCTTTACCA------CCACCCCCGCCCCCATCTCCACTCTCAGTAGCCCGAGCCCT-C------------CCATTCTCCACTCCTTCGACCCAATTCCACTAAGTCAAGAACCGTGGTCGGTCTCAGCCACTCACTCAGCGCCACTC-TATGCTCCGAAGTCCGTGTAGCACCACCGCTCCTCGTGTTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551208 223 + 173848474 TTGTCTTTTCCCCTCCTTTTGCTCAAGAACTC----GTCCATTCCTTCGCCAACTCTCTTTACCA------CCACCCCCGCCCCCATCTCCACTCTCAGTAGCCCGAGCCCT-C------------CCATTCTCCACTCCTTCGACCCAATTCCACTAAGTCAAGAACCGTGGTCGGTCTCAGCCACTCACTCAGCGCCACTC-TATGCTCCGAAGTCCGTGTAGCACCACCGCTCCTCGTGTTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258192 222 +   2037526 TTGTCTTTTCCCCTCCTTTTGCTCAACAACT-----GTCCATTCCTTCTCCAACTCTCTTCACCA------CCACCCCCGCCCCCATCTCCACTCTCAGTAGCCCGAGCCCT-C------------CCATTCTCCACTCCTTCGACCCAATTCCACTAAGTCAAGAACCGTGGTCGGTCTCAGCCACTCACTCAGCGCCACTC-TGTGCTCCGAAGTCCGTGTAGCACCACTGCTCCCCGTGTTCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925196 223 + 122973662 TTGTCTTTTCCCCTCCTTTTGCTCAAGAACTC----GTCCATTCCTTCTCCAACTCTCTTCACCA------CCACCCCCGCCCCCATCTCCACTCTCAGTAGCCGGAACCCT-C------------CCCTTCTCCACTCCTTCGACCCAATTCCACTAACTCAAGAACCGTGGTCGCTCTGAGCCACTCACTCAGCGCCACTC-TATGCTCCGAAGTCAGTGTAGCACCACCGCTCCCCGTGTTCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30804794 222 + 172585720 TTGTGTTTTCCCCTCCTTTTCCTCAAGAACTT----GTCCGTTCCTTctccag--ctcttcacca------ccacccccacccccatctccactctcAGTAGCCCGAGCCCT-C------------CCCTTCTCCACTCCTTCGACCCAATTCCACTAAGTCAAGAACCCTGGTCGCTCTCAGTTACTCATTCAGCGCTACTCTTATGCTCCGAAGTCCGTGTAGCACCACCGCTCCCCGTGTTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30094281 222 - 170955103 TTGTGTTTTCCCCTCCTTTTCCTCAAGAACTT----GTCCGTtccttctccag--ctcttcacca------ccacccccacccccatctccactctcAGTAGCCCGAGCTCT-C------------CCCTTCTCCACTCCTTCGACCCAATTCCACTAAGTCAAGAACCCTGGTCGCTCTCAGTTACTCATTCAGCGCTACTCTTATGCTCCGAAGTCCGTGTAGCACCACCGCTCCCCGTGTTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     343143 222 +   1495729 TTGTGTTTTCCCCTCCTTTTGCTCAAGAACTC----GTCCATTCCTTctccaa--ctcttcacca------ccacccccgcccccatctccactctcAGTAGCCCGAGCTCT-C------------CCCTTCTCCACCCCTTCGACCCAATTCCACTAAGTCAAGAACCCTGGTCGCTCTCAGTTACTCATTCAGCGCTACTCTTATGCTCCGAAGTCCGTGTAGCACCACCGCTCCCCGTGTTCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441048 222 -    863181 TTGTGTTTTCCTCTCTTTTTGCTCAAGAACTC----GTCCGTtccttctccaa--ctcttcacca------ccacctccacccccatctccactctcAGTAGCCCAAGCCCT-C------------CCTTTCTCCACTCCTTCGACCCAATTCCACTAAGTCAAGAACCCTGATCGCTCTCAGTTACTCACTCAGCGCTACTCTTATGCTCCGAAGTCCGTGTAGCACCACCGCTCCCCGTGTTCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29593196 228 -  71996105 TTGTGTTTTCCCCTCCTTTTGCTCAAGAACTC----GTCCGTTCCTTctccaa--ctcttcaccaccacccccacccccacccccatctctactctcAGTAGCCCAAGCCCT-C------------CCCTTCTCCACTCCTTCGACCCAATTCCACTAAGTCAAGAACCCTGATCGCTCTCAGTTACTCACTCAGCGCTACTCTTATGCTCCGAAGTCCGTGTAGCACCACCGctccccgtgttctc
i chlSab2.chr17            C 0 I 21
s manLeu1.NW_012107142v1     286041 222 -    735854 TTGTGTTTTCCCCTCCTTTTGCTCAAGAACTC----GTCCGTTCCTTTTCCAA--CTCCTCACCA------CCACCCCCGCCCCCATCTCCACTCTCAGTAGCCCGAGCCCT-C------------CCCTTCTCCACTCCTTCGACCCAATTCCACTAAGTCAAGAACCCTGATCGCTCTCAGTTACTCACTCAGCGCTACTCTTATGCTCCGAAGTCCGTGTAGCACCACCGCTCCCCGTGTTCTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     231535 219 -   1829203 TTGTGTTTTCCCCTCCTTTTGCTCAAGAACTC----Gtccattccttctccaa--ctcttcacca------ccacccccgcccccatctccactctcAGTAGCCCGAGCCCT-C------------CCCTTCTCCAGTCCTTCGACCCAATTCC---AAGTCAAGAACCCTGGTCGCTCTCAGTCACTCACTCGGCGCTTCTCTTATGCTTCGAAGTCCGTGTAGCACCACCGCTCCCCGTGTTCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30404945 203 + 171630274 TTGTATTTTCCCCTCCTTTTGCTCAAGAACTC----GTCCATTCCTTCTCCAACTCTCTTCACCA------CCACCAC--CTCCCATTCCCACTCTCAGTAGCCCGAGCCCTGC------------CCCTTCTCCACTCCTTCCACCCAGTTCCACTCAGGAACCCACT---------------CA----CTCAGTGCCATTC-TATGCTCCTAAATCCGAACAGCACCGCCACTCCCGGTGTTCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           229590 200 +    515838 TTGTGTTTTCCCCTCCTTTTGCTCAAGAACTC----G---ATTCCTTCTCCAGCTCTCTTCACCA------CCATCAC--CCCCCATCCCCACTCTCAGTAGCCGGAGCCCTGC------------CTCTTCTCCACTCCTTCCACCCAATTCCACTCAATCAGGAACC---------------CA----CTCAGTGCCATTA-TATGCTCCTACGTCTGAGCAGCACCCCGGCTCCCCGTGTTCTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     859901 203 -   1771730 TTGTATTTT-CCCTCCTTTTGCTCAAGAACTC----G---ATTCCTTCTCCAGCTCTCTTCACCA------CCATCAC--CCCCCATCCCCACTCTCAGTAGCCCGAGCGCTGC------------CCCTTCTCCGCTCCTTCCACCCAATTCCACTCAGTCAGGAACC---------------CACTCGCTCAGTGCCATTC-TATGCTCCTACGTCTGAACAGCACCACGGCTCCCCGTGCGCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     352587 204 -    383796 TTCTATTTTCCCCTCCTTTTGCTCAAGAACTC----G---ATTCCTTCACCAACTCTCTTCGCCA------CCATCAC--CCCCCATCCCCACTCTCAGTAGCCGGAGCCCTGC------------CCCTTCTCCACTCCTTCCACCCAATTCCACTCAGTCAGGAATC---------------CACTCACTCAGTGCCATTC-TATGCTCCTAAGTCTGAACAGCACCATGGCTCCCCATGTTCTC
i aotNan1.NW_018496904v1   I 5 C 0
s otoGar3.GL873550           277878 197 +  18854210 -----------------TTAGAGCAGAAGGTCCATAGCCAGGTCTTTTTCCAA--GTCTTCACCA------CCATCAC------------CACTCT--GTAGCCCGGGCCCG-CTCCCCATTCCATCCCGTCTCCATACCCTCGACCCAACTCGACGTAATCAGAGACCCTGATCGCTCTCAGCCACTCACTCAGTGTCACTT-GACGCTCTTCAGTCCGCGCAGCGCCAGGGCTCCT---------
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            23430 123 -     45298 ----ACCTTCCCCTTCTCCTGCTCCAGGACAC-------------------------------CG------CGCCCCC---------TCCCACGCGCAG-GGCCCGGCCGCC-C--------------------------------------------------------------------GCCGCTCACTCAGAGCCATCT-GGAGCTCTTCCGTGGGCGCAGCGAC---GCCCCCCGACTTCTC
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e proCoq1.NW_012149775v1     127532 816 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=57505.000000
s hg38.chr6_GL000254v2_alt  1447601 6 +   4827813 TGAGCT
s panTro5.chr6             30316971 6 + 175400573 TGAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551431 6 + 173848474 TGAGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258414 6 +   2037526 TGAGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925419 6 + 122973662 TGAGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805016 6 + 172585720 TGAGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30094503 6 - 170955103 TGAGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     343365 6 +   1495729 TGAGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441270 6 -    863181 TGAGCT
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     286263 6 -    735854 TGAGCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     231754 6 -   1829203 TGAGCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30405148 6 + 171630274 TGAGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           229790 6 +    515838 TGAGCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     860104 6 -   1771730 TGAGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     352791 6 -    383796 TGAGCT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           278075 4 +  18854210 ACAG--
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            23553 6 -     45298 GGAGCT
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e proCoq1.NW_012149775v1     127532 816 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I
e chlSab2.chr17            29593424 21 -  71996105 I

a score=462290.000000
s hg38.chr6_GL000254v2_alt  1447607 54 +   4827813 GGCTTAGCTTGAAGGAACCTCACAAAACCAAGCCCGGATCGCTGTCAGCC----ACTC
s panTro5.chr6             30316977 54 + 175400573 GGCTTGGCTTGAAGGAACCTCACGAAACCAAGCCCGGATCGCTGTCAGCC----ACTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551437 54 + 173848474 GGCTTGGCTTGAAGGAACCTCACGAAACCAAGCCCGGATCGCTGTCAGCC----ACTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258420 54 +   2037526 GGCTTGGCTTGAAGGAACGTCACAAAACCAAGCCCGGATCGCTGTCAGCC----ACTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925425 54 + 122973662 GGCTTGGCTTGAAGGAACCTCACAAAACCGAGCCCGGATCGCTGTCAGCC----ACTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805022 53 + 172585720 GGTTTGACTTGAAGGAACCTCACAAAA-CAAGCCCGGATCGCTGTCAGTC----ACTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30094509 53 - 170955103 GGTTTGACTTGAAGGAACCTCACAAAA-CAAGCCCGGATCGCTGTCAGTC----ACTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     343371 45 +   1495729 GGTTTGACTTGAAGG--------AAAA-CAAGCCCGGATCGCTGTCAGTC----ACTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441276 53 -    863181 GGTTTGGCTTGAAGGAACCTCACAAAA-CAAGCCCGGATCGCTGTCAGTC----ACTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29593445 53 -  71996105 GGTTTGACTTGAAGGAACCTCACAAAA-CAAGCCCGGATCGCTGTCAGTC----ACTC
i chlSab2.chr17            I 21 C 0
s manLeu1.NW_012107142v1     286269 53 -    735854 GGTTTGGCTTGAAGGAACCTCACAAAA-CAAGCCCGGATCGCTGTCAGTC----ACTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     231760 53 -   1829203 GGCTTGACTTGAAGGAACCTCACAAAA-CAAGCCCGGATCGCTGTCAGTC----ACTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30405154 49 + 171630274 GGCTTGGCTTGAAGGAACCTCACAAAA-CAAGCCAGGGTCTCTGTCAGCC--------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           229796 49 +    515838 GGCTTGGCTTGAAGGAACCTCACGAAA-CAAGCCAGGATCGCTGTCAGCC--------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     860110 53 -   1771730 GGCTTGCCTTGAAGGAACTTCACAAAA-CAAGCCAGGATTACTGTCAGCCACTC----
i cebCap1.NW_016107755v1   C 0 I 6899
s aotNan1.NW_018496904v1     352797 49 -    383796 GGCTTGGCTTGAAGGAACCTCACAAAA-CAAGCCAGGATCACTGTCAGCC--------
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           278079 53 +  18854210 GGCTTGGCTTGAAGGAACCACGCCTAA-CAGGTCACAGTGGCTCTCAGCC----ACTT
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            23559 20 -     45298 GCCTGAGCTTTGGAGACCCT--------------------------------------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e proCoq1.NW_012149775v1     127532 816 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=549994.000000
s hg38.chr6_GL000254v2_alt  1447661 68 +   4827813 ACTCAGTGCCGCATGGAGCTCCTCG----GACAGC-GCAACGTCAAATGTCTTCGTATCCTGAGAGCTCGCTC
s panTro5.chr6             30317031 68 + 175400573 ACTCAGTGCCGCATGGAGCTCCTCG----GACAGC-GCAGCGTCGAATGTCTTCGTATCCTGAGAGCTGGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551491 68 + 173848474 ACTCAGTGCCGCATGGAGCTCCTCG----GACAGC-GCAGCGTCGAATGTCTTCGTATCCTGAGAGCTGGCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258474 68 +   2037526 ACTCAGTGCCGCATGGAGCTCCTCG----GACAGC-GCAGCGTCAAATGTCTTCGTATCCTGAGAGCTGGCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925479 68 + 122973662 ACTCAGCGCCGCATGGAGCTCCTCG----AACAGC-GCAGCGCCAAATATCTTCGTGTCCTGAGAGCTGGCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805075 68 + 172585720 ACTCAGTGCCGCATGGAGCTCCTCG----GACAGC-GCAGCGCCAACTGTCTTTGTGTCCTGAGAGCTGGCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30094562 68 - 170955103 ACTCAGTGCCGCATGGAGCTCCTCG----GACAGC-GCAGCGCCAACTGTCTTTGTGTCCTGAGAGCTGGCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     343416 68 +   1495729 ACTCAGTGCCGCATGGAGCTCCTCG----GACAGC-GCAGCGCCAACTGTCTTTGTGTCCTGAGAGCTGGCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441329 68 -    863181 ACTCAGTGCCGCATGGAGCTCCTTG----GCCAGC-GCAGCGCCAACTGTCTTTGTGTCCTGAGAGCTGGCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29593498 72 -  71996105 ACTCAGTGCCGCATGGAGCTCCTCAGACAGACAGT-GCAGCGCCAACTGTCTTTGTGTCCTGAGAGCTGGCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286322 72 -    735854 ACTCAGTGCCGCATGGAGCTCCTCGGACAGACAGT-GCAGCGCCAACTGTCTTTGTGTCCTGAGAGCTGGCTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     231813 68 -   1829203 ACTCGGTGCCGCATGGAGCTCCTCG----GACAGC-GCAGCGCCAACTGTCTTTGTGTCCTGAGAGCTGGCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30405203 69 + 171630274 ACTCATTGCCACGGGGAGCTCCTTG----GACAGCCACAGCGTCAAAGCTCTTCATGTTCTGAGAGCTGGCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           229845 69 +    515838 ACTCAGTGCCACGGGGAGCTCCTTG----GACAGCCGCAGCGTCAAATCTCTTCATGCTCTGAGAGCTGGCTC
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     352846 67 -    383796 ACTCAGTGCCACAGGGAGCGCCTTG----GACAGCTGCAGCGTCAAA--TCTTCGTGTTCTGAGAGCTGGCTC
i aotNan1.NW_018496904v1   C 0 I 8038
s otoGar3.GL873550           278132 65 +  18854210 ACTCACCGTCACCTCCAGTTCC-------CACAGC-GCAGTGCCAAAGCTCCCTGCATTCTCAGAGCTAGCTC
i otoGar3.GL873550         C 0 I 3
s dasNov3.JH580105            23579 20 -     45298 --------CCACATAAGAGGCCCTG----CTC-----------------------------------------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e proCoq1.NW_012149775v1     127532 816 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I
e cebCap1.NW_016107755v1     860163 6899 -   1771730 I

a score=174946.000000
s hg38.chr6_GL000254v2_alt  1447729 25 +   4827813 CTTGACCAGAAATCTCATCATAAGA
s panTro5.chr6             30317099 25 + 175400573 CTTGACCAGAAATCTCATCATAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551559 25 + 173848474 CTTGACCAGAAATCTCATCATAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258542 25 +   2037526 CTTGACCAGCAATCTCATCATAAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925547 25 + 122973662 CTTGACCAGAAATCTCAGCATGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805143 25 + 172585720 CTTGACCAGAAATCTCAGCATAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30094630 25 - 170955103 CTTGACCAGAAATCTCAGCATAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     343484 25 +   1495729 CTTGACCAGAAATCTCAGCATAAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441397 25 -    863181 CTTGACCAGAAATCTCAGCATAAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29593570 25 -  71996105 CTTGACCAGAAATCTCAGCATAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286394 25 -    735854 CTTGACCAGAAATCTCAGCATAAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     231881 25 -   1829203 CTTGACCAGAAATCTCAGCATAAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30405272 25 + 171630274 TGCAACCAGATACCTCAACATAAGA
i calJac3.chr4             C 0 I 17396
s saiBol1.JH378341           229914 25 +    515838 TGCAACCAGATACCTCAGCATAAGA
i saiBol1.JH378341         C 0 I 6530
s otoGar3.GL873550           278200 22 +  18854210 TTTG---AGGAACCTCAACAGAAGA
i otoGar3.GL873550         I 3 C 0
s dasNov3.JH580105            23599  3 -     45298 -------------CGC---------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e proCoq1.NW_012149775v1     127532 816 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I
e aotNan1.NW_018496904v1     352913 8038 -    383796 I
e cebCap1.NW_016107755v1     860163 6899 -   1771730 I

a score=61045.000000
s hg38.chr6_GL000254v2_alt  1447754 5 +   4827813 GGCCA
s panTro5.chr6             30317124 5 + 175400573 GGCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551584 5 + 173848474 GGCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258567 5 +   2037526 GGCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925572 5 + 122973662 GGCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805168 5 + 172585720 GGCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30094655 5 - 170955103 GGCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     343509 5 +   1495729 GGCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441422 5 -    863181 GGCCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29593595 5 -  71996105 GGCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286419 5 -    735854 GGCCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     231906 5 -   1829203 GGCCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30422693 5 + 171630274 GGCCA
i calJac3.chr4             I 17396 C 0
s saiBol1.JH378341           236469 5 +    515838 GGCCA
i saiBol1.JH378341         I 6530 C 0
s cebCap1.NW_016107755v1     867062 5 -   1771730 GGCCG
i cebCap1.NW_016107755v1   I 6899 C 0
s otoGar3.GL873550           278222 5 +  18854210 GGCCA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            23602 4 -     45298 -GCCG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e proCoq1.NW_012149775v1     127532 816 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I
e aotNan1.NW_018496904v1     352913 8038 -    383796 I

a score=946029.000000
s hg38.chr6_GL000254v2_alt  1447759  95 +   4827813 GGAGACATACTGGAAAAGTGACTTTCCC-AGCAGACGAGGCCCGAAACAG----GGAGTGGGATGGGGCTGAAGAGTGGTGATTTGGTGGCCCCGATGTA
s panTro5.chr6             30317129  95 + 175400573 GGAGACATACTGGAAAAGTGACTTTCCC-AGCAGACGAGGCCCGAAACAG----GGAGTGGGATGGGGCTAAAGAGTGGTGATTTGGTGGCCCCGATGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551589  95 + 173848474 GGAGACATACTGGAAAAGTGACTTTCCC-AGCAGACGAGGCCCGAAACAG----GGAGTGGGATGGGGCTAAAGAGTGGTGATTTGGTGGCCCCGATGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258572  95 +   2037526 GGAGACATACTGGAAAAGTGACTTTCCC-AGCAGACGAGGCCCGAAACAG----GGAGTGGGATGGGGCTGAAGAGTGGTGATTTGGTGGCCCCGATGTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925577  95 + 122973662 GGAGACATACTGGAAAAGTGACTTTCCC-AGCAGAGGAGGCCCGAAACAG----GGAGTGGGATGGGGCTGAGGAGTGGTGATTTGGTGGCCCCGATGTA
i nomLeu3.chr1a            C 0 I 3
s rheMac8.chr4             30805173  91 + 172585720 GGAGAC--ACTGGAAGAGTGACTTTCCC-AGCAGAGGAGGCCCGAAACAG----GGAGTGGGAT--GGCTGAGCAGTGGCGATTTGGTGGCCCCGATGTA
i rheMac8.chr4             C 0 I 3
s macFas5.chr4             30094660  91 - 170955103 GGAGAC--ACTGGAAGAGTGACTTTCCC-AGCAGAGGAGGCCCGAAACAG----GGAGTGGGAT--GGCTGAGCAGTGGCGATTTGGTGGCCCCGATGTA
i macFas5.chr4             C 0 I 3
s macNem1.NW_012012100v1     343514  91 +   1495729 GGAGAC--ACTGGGAGAGTGCTTTTCCC-AGCAGAGGAGGCCCGAAACAG----GGAGTGGGAT--GGCTGAGGAGTGGCGATTTGGTGGCCCCGATGTA
i macNem1.NW_012012100v1   C 0 I 3
s cerAty1.NW_012002535v1     441427  91 -    863181 GGAGAC--ACTGGAAAAGTGACTTTCCC-AGCAGAGGAGGCCCGAAACAG----GGAGTGGCAT--GGCTGAGGAGTGGCGATTTGGTTGCCCCGATGTA
i cerAty1.NW_012002535v1   C 0 I 3
s chlSab2.chr17            29593600  91 -  71996105 GGAGAC--ACTGGAAGAGTGACTTTCCC-AGCAGAGGAGGCCCGAAACAG----GGAGTGGGAT--GGCTGAGGAGTGGCGATTTGGTGGCCCCGATGTA
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012107142v1     286424  91 -    735854 GGAGAC--ACTGGAAGAGTGACTTTCCC-AGCAGAGGAGGCCCGAAACAG----GGAGTGGGAT--GGCTGAGGAGTGGCGATTTGGTGGCCCCGATGTA
i manLeu1.NW_012107142v1   C 0 I 3
s colAng1.NW_012115577v1     231911  91 -   1829203 GGAGAC--ACTGGAAGAGTGACTTTCCC-AGCAGAGGAGGCCCGAAACAG----GGAGTGGGAT--GGCTGAGGAGTGGCGATTTGGTGGCCCCGATGTA
i colAng1.NW_012115577v1   C 0 I 3
s calJac3.chr4             30422698  94 + 171630274 GGAGACATTCT-GAAGAGCGACTTTCCC-AGCAGAGGAGGCCCAAGACCA----GGAGTGGGATGGGGCTGAGGAGTGGCAATTTGGTGGCCTTGATGTA
i calJac3.chr4             C 0 I 3
s saiBol1.JH378341           236474  95 +    515838 GGAGACATTCTGGAAGAGCAACTTTCCC-AGCAGAGGAGGCCCAAGACCA----GGAGTGGGATGGGGCTGAGGAGTGGCAATTTGGTGGCCTTGATGTA
i saiBol1.JH378341         C 0 I 3
s cebCap1.NW_016107755v1     867067  95 -   1771730 GGAGACATTCTGGAAGAGCGACTTTCCC-AGCAGAGGAGGCCCAAGACCA----GCAGTGGGATGGGGCTGAGGAGTGGCAATTTGGTGGCCTTGATGTA
i cebCap1.NW_016107755v1   C 0 I 9
s aotNan1.NW_018496904v1     360951  93 -    383796 GGAGACATTCTGGAAGAGCGACTTTCCC-AGCAGAGGAGGCCCAAGACCA----GGAGTGGGATGGGGCT--GGAGTGGCAATTTGGTGGCCTTGATGTA
i aotNan1.NW_018496904v1   I 8038 I 3
s otoGar3.GL873550           278227 100 +  18854210 GGAGACATGCTGCAGAAGTAGTTTTCCCTTGCAAAGGAGGCCCGAAATGGGGGAGGAGTGGAATGAAGACGAGGGACTGGGAGTTGGTGACCCGGGTGTA
i otoGar3.GL873550         C 0 I 3
s dasNov3.JH580105            23606  80 -     45298 GGAGCAAGGCTGGAGAGACGGCTTTCCT-AGCGAAGGAGGCCCGGAACAG----GGGCTGGAGTAAAG----GCAACTCCGGTTCAGTG-----------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e proCoq1.NW_012149775v1     127532 816 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=70600.000000
s hg38.chr6_GL000254v2_alt  1447854 6 +   4827813 GTTCTG
s panTro5.chr6             30317224 6 + 175400573 GTTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551684 6 + 173848474 GTTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258667 6 +   2037526 GTTCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925675 6 + 122973662 GTTCTG
i nomLeu3.chr1a            I 3 C 0
s rheMac8.chr4             30805267 6 + 172585720 GTTCTG
i rheMac8.chr4             I 3 C 0
s macFas5.chr4             30094754 6 - 170955103 GTTCTG
i macFas5.chr4             I 3 C 0
s macNem1.NW_012012100v1     343608 6 +   1495729 GTTCTG
i macNem1.NW_012012100v1   I 3 C 0
s cerAty1.NW_012002535v1     441521 6 -    863181 GTTCTG
i cerAty1.NW_012002535v1   I 3 C 0
s chlSab2.chr17            29593694 6 -  71996105 GTTCTG
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012107142v1     286518 6 -    735854 GTTCTG
i manLeu1.NW_012107142v1   I 3 C 0
s colAng1.NW_012115577v1     232005 6 -   1829203 GTTCTG
i colAng1.NW_012115577v1   I 3 C 0
s calJac3.chr4             30422795 6 + 171630274 GTTCTG
i calJac3.chr4             I 3 C 0
s saiBol1.JH378341           236572 6 +    515838 GTTCTG
i saiBol1.JH378341         I 3 C 0
s aotNan1.NW_018496904v1     361047 6 -    383796 GTTCTG
i aotNan1.NW_018496904v1   I 3 C 0
s otoGar3.GL873550           278330 6 +  18854210 GTTCTG
i otoGar3.GL873550         I 3 C 0
s dasNov3.JH580105            23686 6 -     45298 GTGCCA
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e proCoq1.NW_012149775v1     127532 816 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I
e cebCap1.NW_016107755v1     867162 9 -   1771730 I

a score=810784.000000
s hg38.chr6_GL000254v2_alt  1447860 97 +   4827813 CCGCCTTTGCGGGAGAAGGAAAGGAGAAAAG--AGGTCAGCGGGAGCACCTCGGCAGCAATCCTCCATTGCCAGACAGCACAGCTGAGCTCTACATACA
s panTro5.chr6             30317230 97 + 175400573 CCGCCTTTGCGGGAGAAGGAAAGGAGAAAAG--AGGTCAGCGGGAGCACCTCGGCAGCAATCCTCCATTGCCAGACAGCACAGCTGAGCTCTACATACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551690 97 + 173848474 CCGCCTTTGCGGGAGAAGGAAAGGAGAAAAG--AGGTCAGCGGGAGCACCTCGGCAGCAATCCTCCATTGCCAGACAGCACAGCTGAGCTCTACATACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258673 97 +   2037526 CCGCCTTTGCGGGAGAAGGAAAGGAGAAAAG--AGGTCAGCGGGAGCACCTCGGCAGCAATCCTCCATTGCCAGACAGCACAGCTGAGCTCTACATACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925681 92 + 122973662 CCGCCTTTGCGGGAGAAGGAAAGGAAAAAAG--AGGTCGGCGGGAGCACCTCAGCAGCAATCC-----TGCCAGCCAGCACAGCTGAGCTCTACATACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805273 96 + 172585720 -GGCCTTTGCGGGAGAAGGAAAGGAGAAAAG--AGGTCAATGGGAGCATCTCAGCAGCAATCCTCCATTCCCAGACAGCACAGCTGAGCTCTACAAGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30094760 96 - 170955103 -GGCCTTTGCGGGAGAAGGAAAGGAGAAAAG--AGGTCAATGGGAGCATCTCAGCAGCAATCCTCCATTCCCAGACAGCACAGCTGAGCTCTACATGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     343614 97 +   1495729 CCGCCTTTGCGGGAGAAGGAAAGGAGAAAAG--AGGTCAGTGGGAGCATCTCAGCAGCAATCCTCCATTCCCAGACAGCACAGCTGAGCTCTACATACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441527 97 -    863181 CCGCCTTTGCGGGAGAAGGAAAGGAGAAAAG--AGGTCGGTGGGAGCACCTCAGCAGCAATCCTCCATTCCCAGACAGCACAGCTGAGCTCTACATACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29593700 97 -  71996105 CCGCCTTTGCGGGAGAAGGAAAGGAGAAAAG--AGGTTAGTGGGAGCATCTCAGCAGCAATCCTCCATTCCCAGACAGCACAGCTGAGCTCTACATACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286524 97 -    735854 CCGCCTTTGCGAGAGAAGGAAAGGAGAAAAG--AGGTCAGTGGGAGCATCTCAGCAGCAATCCTCCATTCCCAGACAGCACAGCTGAGCTCTACATACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232011 97 -   1829203 CCGCCTTTGCGGGAGAAAGAAAGGAGAAAAG--AGGTCAGTGGGAGCACCTCAGCAGCAATCCTCCATTCCCAGACAGCACAGCTGAGCTCTACATACA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           236578 95 +    515838 CCACCTGTGTGGGAAAAGGAAAAGAG--AAG--AGGTCAGTGGGATCCCCTCAGCAGCAATCCTCCACTGCCAGACAGCACAGCTGAGCTCTGCACACC
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     361053 97 -    383796 CTGCCTTTGTGGGAGAAGGAAAGGAGAAAAG--AGGTCAGTGGGAGCACCTCAGCAGCAATCCTCCATTGCCAGACAGCACAGCTGAGCTCTGCACACC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           278336 81 +  18854210 TGGCTTTTGAGGGAG-AGGAATGGAGGAAAGAAAGGCCAGCGGGAGCAAGTCATCAGTAGTCCTTCACTGCCAGATG--------GAGCT---------
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            23692 94 -     45298 CCGCCTTGGGGGAAGAAGTAAAGGAGAAAAG---CATCGG-GGGAGCCAGGCAGGAATAGCCCTCCCTTGCCAGACAGCGCTCCCCAACTGTA-GTACA
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e proCoq1.NW_012149775v1     127532 816 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I
e cebCap1.NW_016107755v1     867162  9 -   1771730 I
e calJac3.chr4             30422801  0 + 171630274 C

a score=454995.000000
s hg38.chr6_GL000254v2_alt  1447957 46 +   4827813 GCAGGAGGGATGGAGGTGAAACTCAAGAAAGTACACCTGAACAAGT--
s panTro5.chr6             30317327 46 + 175400573 GCAGGAGGGATGGAGGTGAAACTCAAGAAAGTACACCTGAACAAGT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551787 46 + 173848474 GCAGGAGGGATGGAGGTGAAACTCAAGAAAGTACACCTGAACAAGT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258770 46 +   2037526 GCAGGAGGGATGGAGGTGAAACTCAAGAAAGTACACCTGAACAAGT--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925773 46 + 122973662 GCAGGAGGGATAGAGGTGAAATTCAAGAAAGTACACCTGAACAACT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805369 46 + 172585720 GCAGGAGAGATGGAGGTGAAACTCAAGAAAGTACACCCGAACAAGT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30094856 46 - 170955103 GCAGGAGAGATGGAGGTGAAACTCAAGAAAGTACACCCGAACAAGT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     343711 46 +   1495729 GCAGGAGAGATGGAGGTGAAGCTCAAGAAGGTACACCCGAACAAGT--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441624 46 -    863181 GCAGGAGAGATGGAGGTGAAACTCAAGAAGGTACAACCGAACAAGT--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29593797 42 -  71996105 GCAGGAGAGATGGAGGTGAAACTCAA----GTACACTCGAACAAGT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286621 46 -    735854 GCAGGAGAGATGGAGGTGAAACTCAAGAAGGTACAACCGAACAAGT--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232108 46 -   1829203 GCAGGACAGATGGAGGTGAAACTCAAGAAAGTACACCTGAGCAAGT--
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           236673 46 +    515838 GCAGGAGGGTTGGCGGTGAAACTCAAGACAGTACACCTGAACAAGT--
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     361150 46 -    383796 GCAGGAGGGATGGCGGTGAAACTCAAGAAAGTACACCTGAGCAAGT--
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     128348 46 -   1411461 GCAGGAGGGATACAGGTTAAACTCAAGAAAGTACACCTGCACAAGT--
i proCoq1.NW_012149775v1   I 816 I 656
s otoGar3.GL873550           278417 45 +  18854210 GCAGGAGAGATAGAGGTTAAACTCAAGAGAATACACCTGGTTAGG---
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            23786 48 -     45298 GCAGGAGGGGTGGGGGTTAGACTCGAGAAAGCACGCCTGAGCACTTAT
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e canFam3.chr35            26318437 451 +  26524999 I
e cebCap1.NW_016107755v1     867162  9 -   1771730 I
e calJac3.chr4             30422801  0 + 171630274 C

a score=299932.000000
s hg38.chr6_GL000254v2_alt  1448003 36 +   4827813 CGGAGCGCCCTCTGTTTCCTGGCAGAGGTGTAATTT
s panTro5.chr6             30317373 36 + 175400573 CGGAGCGCCCTCTGTTTCCTGGCAGAGGTGTAATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551833 36 + 173848474 CGGAGCGCCCTCTGTTTCCTGGCAGAGGTGTAATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258816 36 +   2037526 CGGAGCGCCCTCTGTTTCCTGGCAGAGGTGTAATTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925819 36 + 122973662 CGGAGCGCCCTCTGTTTCCTGGCGGAGGTGCAATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805415 36 + 172585720 CGGGGCACCCACTGTTTCCTGGCAGAGGTGTAATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30094902 36 - 170955103 CGGGGCACCCACTGTTTCCTGGCAGAGGTGTAATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     343757 36 +   1495729 CGGGGCACCCACTGTTTCCTGGCAGAGGTGTAATTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441670 36 -    863181 CGGGGCACCCACTGTTTCCTGGCAGAGGTGTAATTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29593839 36 -  71996105 CGGGGCACCCACTGTTTCCTGGCAGAGGTGTAATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286667 36 -    735854 CGGGGCACCCACTGTTTCCTGGCAGAGGTGTAATTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232154 36 -   1829203 CGGGGCACCCACTGTTTCCTGGCAGAGGTGTAATTT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           236719 35 +    515838 CGGGG-GCCCACTGTTTCCTGGTGGAGGTGTAATTT
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     361196 35 -    383796 CGGGG-GCCCACTGCTTCCTGGCGGAGGTGTAATGT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           278462 31 +  18854210 -GGGTTGTCC----TTTCCTGGGGGAGGTGTAATTT
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            23834 36 -     45298 CAGGGGGCGTCCTGTTAGCTGGGGGAGCTTAACTTT
i dasNov3.JH580105         C 0 I 286
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e proCoq1.NW_012149775v1     128394 656 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I
e cebCap1.NW_016107755v1     867162  9 -   1771730 I
e calJac3.chr4             30422801  0 + 171630274 C

a score=187578.000000
s hg38.chr6_GL000254v2_alt  1448039 22 +   4827813 GGGGAGGAACTGAGGAAATGGA
s panTro5.chr6             30317409 22 + 175400573 GGGGAGGAACTGAGGAAATGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551869 22 + 173848474 GGGGAGGAACTGAGGAAATGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258852 22 +   2037526 GGGGAGGAACTGAGGAAATGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925855 22 + 122973662 GGGGAGGAAATGAGGAAATGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805451 22 + 172585720 AGGGAGGAACTGAGGAAATGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30094938 22 - 170955103 AGGGAGGAACTGAGGAAATGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     343793 22 +   1495729 AGGGAGGAACTGAGGAAATGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441706 22 -    863181 AGGGAGGAACTGAGGAAATGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29593875 22 -  71996105 AGGGAGGAACTGAGGAAATGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286703 22 -    735854 AGGGAGGAACTGAGGAAATGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232190 22 -   1829203 AGGGAGGAACTGAGGAAATGGA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           236754 22 +    515838 GGGGAGGAACTGAGGAAATGGA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     361231 22 -    383796 GGGGAGGAACTGAGGAAATGGA
i aotNan1.NW_018496904v1   C 0 I 284
s otoGar3.GL873550           278493 18 +  18854210 GGGGAGGAAATGAATGAG----
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e dasNov3.JH580105            23870 286 -     45298 I
e proCoq1.NW_012149775v1     128394 656 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I
e cebCap1.NW_016107755v1     867162  9 -   1771730 I
e calJac3.chr4             30422801  0 + 171630274 C

a score=44948.000000
s hg38.chr6_GL000254v2_alt  1448061 7 +   4827813 ATAAATG
s panTro5.chr6             30317431 7 + 175400573 ATAAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551891 7 + 173848474 ATAAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258874 7 +   2037526 ATAAATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925877 7 + 122973662 ATAAATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805473 7 + 172585720 ATAAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30094960 7 - 170955103 ATAAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     343815 7 +   1495729 ATAAATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441728 7 -    863181 ATAAATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29593897 7 -  71996105 ATAAATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286725 7 -    735854 ATAAATG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232212 7 -   1829203 ATAAATG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           236776 7 +    515838 TGAGATG
i saiBol1.JH378341         C 0 I 261
s otoGar3.GL873550           278511 7 +  18854210 ATGCCTG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e dasNov3.JH580105            23870 286 -     45298 I
e proCoq1.NW_012149775v1     128394 656 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I
e aotNan1.NW_018496904v1     361253 284 -    383796 I
e cebCap1.NW_016107755v1     867162 9 -   1771730 I
e calJac3.chr4             30422801 0 + 171630274 C

a score=89463.000000
s hg38.chr6_GL000254v2_alt  1448068 19 +   4827813 Aattcattcatttattcat
s panTro5.chr6             30317438 19 + 175400573 Aattcattcatttattcat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551898 19 + 173848474 Aattcattcatttattcat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258881 11 +   2037526 AATTC--------ATTCAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925884 19 + 122973662 Aattcattcatttattcat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805480 19 + 172585720 Aattcattcatttattcat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30094967 19 - 170955103 Aattcattcatttatttat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     343822 19 +   1495729 Aattcattcatttatttat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441735 19 -    863181 Aattcattcatttattcat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29593904 19 -  71996105 Aattcattcatttattcat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286732 19 -    735854 Aattcattcatttattcat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232219 19 -   1829203 Aattcattcatttattcat
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           278518  8 +  18854210 ----CCCCCACC-------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e dasNov3.JH580105            23870 286 -     45298 I
e proCoq1.NW_012149775v1     128394 656 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I
e saiBol1.JH378341           236783 261 +    515838 I
e aotNan1.NW_018496904v1     361253 284 -    383796 I
e cebCap1.NW_016107755v1     867162  9 -   1771730 I
e calJac3.chr4             30422801  0 + 171630274 C

a score=105051.000000
s hg38.chr6_GL000254v2_alt  1448087 18 +   4827813 ttattccattTAGTGGAA
s panTro5.chr6             30317457 18 + 175400573 ttattccattTAGTGGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551917 18 + 173848474 ttattccattTAGTGGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258892 18 +   2037526 TTATTCCATTTAGTGGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925903 18 + 122973662 ttattccattTGGTGGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805499 18 + 172585720 ttattccattTGGTGGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30094986 18 - 170955103 ttattCCATTTGGTGGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     343841 18 +   1495729 ttattctattTGGTGGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441754 18 -    863181 ttatttcattTGGTGGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29593923 18 -  71996105 ttattccattTGGTGGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286751 18 -    735854 ttatttcattTGGTGGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232238 18 -   1829203 ttattccattTGGTGGAA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           237044 16 +    515838 TCATTCCATTT-GTGAT-
i saiBol1.JH378341         I 261 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e dasNov3.JH580105            23870 286 -     45298 I
e proCoq1.NW_012149775v1     128394 656 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I
e otoGar3.GL873550           278526  0 +  18854210 C
e aotNan1.NW_018496904v1     361253 284 -    383796 I
e cebCap1.NW_016107755v1     867162  9 -   1771730 I
e calJac3.chr4             30422801  0 + 171630274 C

a score=40709.000000
s hg38.chr6_GL000254v2_alt  1448105 5 +   4827813 TTGGG
s panTro5.chr6             30317475 5 + 175400573 TTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551935 5 + 173848474 TTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258910 5 +   2037526 TTGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925921 5 + 122973662 TTGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805517 5 + 172585720 TTGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095004 5 - 170955103 TTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     343859 5 +   1495729 TTGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441772 5 -    863181 TTGGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29593941 5 -  71996105 TTGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286769 5 -    735854 TTGGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232256 5 -   1829203 TTGGG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           237060 5 +    515838 TTGAG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     361537 5 -    383796 TTGAG
i aotNan1.NW_018496904v1   I 284 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e mm10.chr17               58078140 1228 -  94987271 I
e dasNov3.JH580105            23870 286 -     45298 I
e proCoq1.NW_012149775v1     128394 656 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I
e otoGar3.GL873550           278526 0 +  18854210 C
e cebCap1.NW_016107755v1     867162 9 -   1771730 I
e calJac3.chr4             30422801 0 + 171630274 C

a score=20055.000000
s hg38.chr6_GL000254v2_alt  1448110 2 +   4827813 TG
s panTro5.chr6             30317480 2 + 175400573 TG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551940 2 + 173848474 TG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258915 2 +   2037526 TG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925926 2 + 122973662 TG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805522 2 + 172585720 TG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095009 2 - 170955103 TG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     343864 2 +   1495729 TG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441777 2 -    863181 TG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29593946 2 -  71996105 TG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286774 2 -    735854 TG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232261 2 -   1829203 TG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           237065 2 +    515838 TG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     361542 2 -    383796 TG
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58079368 2 -  94987271 TG
i mm10.chr17               I 1228 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e dasNov3.JH580105            23870 286 -     45298 I
e proCoq1.NW_012149775v1     128394 656 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I
e otoGar3.GL873550           278526 0 +  18854210 C
e cebCap1.NW_016107755v1     867162 9 -   1771730 I
e calJac3.chr4             30422801 0 + 171630274 C

a score=461021.000000
s hg38.chr6_GL000254v2_alt  1448112 47 +   4827813 GATACAGCATTTTGACCACCTGTAGACTTAGAGGT----CCCTTAGTATTC----
s panTro5.chr6             30317482 47 + 175400573 GATACAGCATTTTGACCACCTGTAGACTTAGAGGT----CCCTTAGTATTC----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551942 47 + 173848474 GATACAGCATTTTGACCACCTGTAGACTTAGAGGT----CCCTTAGTATTC----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258917 47 +   2037526 GATACAGCATTTTGACCACCTGTAGACTTAGAGGT----CCGTTAGTATTC----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925928 47 + 122973662 GATACAGCATTTTGACCACCTGTAGACTTAGAGGT----CCCTTAGTATTC----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805524 47 + 172585720 GATACAGCATTTTGACCACCTGTAGACTTGGAGGT----CCCTTCGTATTC----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095011 47 - 170955103 GATACAGCATTTTGACCACCTGTAGACTTGGAGGT----CCCTTGGTATTC----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     343866 47 +   1495729 GATACAGCATTTTGACCACCTGTAGACTTGGAGGT----CCCTTAGTATTT----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441779 47 -    863181 GATACAGCATTTTGACCACCTGTAGACTTGGAGGT----CCCTTAGTATTC----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29593948 47 -  71996105 GATACAGCATTTTGACCACCTGTAGACTTGGAGGT----CCCTTAGTATTT----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286776 47 -    735854 GATACAGCATTTTGACCACCTGTAGACTTGGAGGT----CCCTTAGTATTC----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232263 47 -   1829203 GATACAGCATTTTGACCACCTGTAGACTTGGAGGT----CCCTTAGTATTC----
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           237067 47 +    515838 GATACAGCATTTTGACCACCTGCAGACTTGGAGGT----CCCTTAGCATTC----
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     361544 47 -    383796 GATATAGCGTTTTGACCACCTGCAGACTTGGAGGT----CCCTTAGCATTC----
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     129050 51 -   1411461 GATAGAGCACTTTGACCACCTGTAGACCTGGAGGTTGCCCCTTCAGTGCTC----
i proCoq1.NW_012149775v1   I 656 C 0
s otoGar3.GL873550           278526 36 +  18854210 ---------------CCATCTGTAGACTTGGAGGTTGCCCCTTCAATGTTG----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58079370 48 -  94987271 GACAGAACATTTTG---ACCTGCAGACCTGGAGGT----CCCTTGCTTCCCCCTC
i mm10.chr17               C 0 C 0
e micMur3.chr6               319490 3437 + 123392446 I
e dasNov3.JH580105            23870 286 -     45298 I
e canFam3.chr35            26318437 451 +  26524999 I
e cebCap1.NW_016107755v1     867162  9 -   1771730 I
e calJac3.chr4             30422801  0 + 171630274 C

a score=20107.000000
s hg38.chr6_GL000254v2_alt  1448159 2 +   4827813 --AG
s panTro5.chr6             30317529 2 + 175400573 --AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551989 2 + 173848474 --AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258964 2 +   2037526 --AG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925975 2 + 122973662 --AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805571 2 + 172585720 --AG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095058 2 - 170955103 --AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     343913 2 +   1495729 --AG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441826 2 -    863181 --AG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29593995 2 -  71996105 --AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286823 2 -    735854 --AG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232310 2 -   1829203 --AG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           237114 2 +    515838 --AG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     361591 2 -    383796 --AG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               322927 2 + 123392446 --AG
i micMur3.chr6             I 3437 C 0
s proCoq1.NW_012149775v1     129101 2 -   1411461 --AG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           278562 2 +  18854210 --GA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58079418 4 -  94987271 AGGA
i mm10.chr17               C 0 C 0
e dasNov3.JH580105            23870 286 -     45298 I
e canFam3.chr35            26318437 451 +  26524999 I
e cebCap1.NW_016107755v1     867162 9 -   1771730 I
e calJac3.chr4             30422801 0 + 171630274 C

a score=831350.000000
s hg38.chr6_GL000254v2_alt  1448161 74 +   4827813 AGAC-------------AGGA-CTCTTACCTGCAGAAGATGA-CCC-GGGCTCTGAGGTTTTGTTCATTTTATGATTATTTTTCTGTAAC
s panTro5.chr6             30317531 74 + 175400573 AGAC-------------AGGA-CTCTTACCTGCAGAAGATGA-CCT-GGGCTCTGAGGTTTTGTTCATTTTATGATTATTTTTCTGTAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30551991 74 + 173848474 AGAC-------------AGGA-CTCTTACCTGCAGAAGATGA-CCT-GGGCTCTGAGGTTTTGTTCATTTTATGATTATTTTTCTGTAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     258966 73 +   2037526 AGAC-------------AGGA-CTCTTACCTGCAGAAGATGA-CCC-GGGCTCTGAGG-TTTGTTCATTTTATGATTATTTTTCTGTAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74925977 74 + 122973662 AGAC-------------AGGA-CTCTTACCTGGAGAAGATGA-CCT-GGGCTCTGAGGTTTTGTTGATTTTATGATTATTTTTCTGTAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805573 75 + 172585720 AGAC-------------AGGA-CTCTTACCTGGAGAAGATGACCCT-GGGCTCTGAGGTTTTGTTCATTTTATGAATATTTTTCTGTAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095060 74 - 170955103 AGAC-------------AGGA-CTCTTACCTGGAGAAGATGA-CCT-GGGCTCTGAGGTTTTGTTCATTTTATGATTATTTTTCTGTAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     343915 74 +   1495729 AGAC-------------AGGA-CTCTTACCTGGAGAAGATGA-CCT-GGGCTCTGAGGTTTTGTTCATTTTATGATTATTTTTCTGTAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441828 74 -    863181 AGTC-------------AGGA-CTCTTACCTAGAGAAGATGA-CTT-GGGCTCTGAGGTTTTGTTCATTTTATGAATATTTTTCTGTAAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29593997 74 -  71996105 AGAC-------------AGGA-CTCTTACCTGGAGAAGATGA-CAC-GGGCTCTGAGGTTTCGTTCATTTTATGATTATTTTTCTGTAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286825 75 -    735854 AGAC-------------AGGA-CTCTTACCTGGAGAAGATGA-CCCTGGGCTCTGAGGTTTTGTTCATTTTATGATTATTTTTCTGTAAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232312 74 -   1829203 AGAC-------------AGGA-CTCTTACCTGGAGAAGATGA-CTT-GGGCTCTGAGGTTCTGTTCATTTTATGATTATTTTTCTGTAAC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           237116 74 +    515838 AGAC-------------AGGA-CTCTTACCTGGAGAAGATGA-CCC-AGGCTCGGAGGTTTTTTCCATTTTAGAATTATTTTTCTGTAAC
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     361593 74 -    383796 AGAC-------------AGGA-CTCTTACCTGGAGAAGATGA-CCC-AGGCTCTGAGGTTTTTTCCATTTTAGAGTTATTTTTCTGTAAC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               322929 74 + 123392446 AGAC-------------AGGA-CTCCTACCTGGAGAGGGTGA-CTC-AGGCTCTGGGGTTTTCTTCGTTTTAGGATTGTTATTCTGTAAC
i micMur3.chr6             C 0 I 70
s proCoq1.NW_012149775v1     129103 74 -   1411461 AGAC-------------AGGA-CTCCTACCTGGAGAGGGTGA-CTC-AGGCTCTGAGGTTTTCTTCGTTTTAGGATTGTTATTCTGTAAC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           278564 73 +  18854210 AGAT-------------GGGACCTCCCATCTGGAGAGGATGA-CTC-AGACTTTGATGTGTTCCT--TTTTAGGGTTATTTTTCTGTAAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58079422 63 -  94987271 AGACCAATGTGCTAGGAAGGA-ATCCTACCTGAGGTGGGCAA-CAC-TG------------------------AATTATTCTTCTGTAAC
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            24156 74 -     45298 GGGC-------------GAGA-CGCCTACCTGGAGAGGGTGA-CCC-GGGCTCCGACGGCTTCTTCTTTTTAGGATTACTGTTCTCTAAC
i dasNov3.JH580105         I 286 C 0
e canFam3.chr35            26318437 451 +  26524999 I
e cebCap1.NW_016107755v1     867162  9 -   1771730 I
e calJac3.chr4             30422801  0 + 171630274 C

a score=612242.000000
s hg38.chr6_GL000254v2_alt  1448235 62 +   4827813 AAG----------CCCCCTAAAAATTG--GGGAGAGAAAA-CCTATTT--GGTCTTGATAACCAGAAGCTGCAAATT-
s panTro5.chr6             30317605 62 + 175400573 AAG----------CCCCCTAAAAATTG--GGGAGAGAAAA-CCAATTT--GGTCTTGATAACCAGAAGCTGCAAATT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30552065 62 + 173848474 AAG----------CCCCCTAAAAATTG--GGGAGAGAAAA-CCAATTT--GGTCTTGATAACCAGAAGCTGCAAATT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     259039 62 +   2037526 AAG----------CCCCCTAAAAATTG--GGGAGAGAAAA-CCAATTT--GGTCTTGATAACCAGAAGCTGCAAATT-
i gorGor5.CYUI01015528v1   C 0 I 1
s nomLeu3.chr1a            74926051 62 + 122973662 AAG----------TCCCCTAAGAATTG--GGGAGAGAAAA-CCAACTT--GGTCTTCATAACCAGAAGCTGCAAACT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805648 62 + 172585720 AAG----------CCCCCTAGGAATTG--GGGAGAGAAAA-CCAATTT--GGTCTTGATAACCAGAAGCTGCAAATT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095134 62 - 170955103 AAG----------CCCCCTAGGAATTG--GGGAGAGAAAA-CCAATTT--GGTCTTGATAACCAGAAGCTGCAAACT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     343989 62 +   1495729 AAG----------GCCCCTAGGAATTG--GGGAGAGGAAA-CCAATTT--GGTCTTGATAACCAGAAGCTGCAAATT-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441902 62 -    863181 AAG----------CCTCCTAGGAATTG--GGGAGAGAAAA-CCAATTT--GGTCTTGATAACCAGAAGCTGCAAATT-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29594071 62 -  71996105 AAG----------CCCCCTAGGAATTG--GGGAGAGAAAA-CCAATTT--GGTCTTGATAACCAGAAGCTGCAAATT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286900 62 -    735854 AAG----------CCCCCTAGGAATTG--GGGAGAGAAAA-CCAATTT--GGTCTTGATAACCAGAAGCTGCAAATT-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232386 58 -   1829203 AAG----------GCCCCTAGGAATTG--GGGAGAGAAAA-CCAATTT--GGTCTTGATAACCAGAAGCTG----TT-
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           237190 62 +    515838 AAG----------CCCCCTAGGTGTTG--GGGAGAGAAAA-GAAATTT--GATCTTGATAGCCAGAAGCTGCAAATT-
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     361667 72 -    383796 AAGGAATTCCCAATTCCCTAGGAATTG--GGAAGAGAAAA-GAAATTT--GATCTTGATAGCCAGAAGCTACAAATT-
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     129177 63 -   1411461 GGG----------CACCCTGAGAATTG--GGAGGAGAAAACCAATTTC--CATATTGATAACCAGAAACTGTAAATT-
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           278637 64 +  18854210 AGG----------CACTCTAAGAATTGAAGGGGGAGGGAA-CAATTTT--GGTATTGATAACCAGGAACTGTAAAGT-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58079485 62 -  94987271 AGG----------CTCCCTAGAAATTG--GAGATAGAAAG-CAAATTT--TAGGTTGATAACAAGAAGTTACAAATT-
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            24230 65 -     45298 AGG----------TACCCTAGGGAGTG--GGGGAAAGAGA-AGCGTTCAGGGTCTGCAACACCAGAAGCTGCCAATTT
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               323003 70 + 123392446 I
e canFam3.chr35            26318437 451 +  26524999 I
e cebCap1.NW_016107755v1     867162  9 -   1771730 I
e calJac3.chr4             30422801  0 + 171630274 C

a score=79724.000000
s hg38.chr6_GL000254v2_alt  1448297 6 +   4827813 AAAAAC
s panTro5.chr6             30317667 6 + 175400573 AAAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30552127 6 + 173848474 AAAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     259102 6 +   2037526 AAAAAC
i gorGor5.CYUI01015528v1   I 1 C 0
s nomLeu3.chr1a            74926113 6 + 122973662 AAAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805710 6 + 172585720 AAAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095196 6 - 170955103 AAAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     344051 6 +   1495729 AAAAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441964 6 -    863181 AAAAAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29594133 6 -  71996105 AAAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286962 6 -    735854 AAAAAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232444 6 -   1829203 AAAAAC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           237252 6 +    515838 AACAAC
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     361739 6 -    383796 AACAAC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               323073 6 + 123392446 AAAAAC
i micMur3.chr6             I 70 C 0
s proCoq1.NW_012149775v1     129240 6 -   1411461 AAAAAC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           278701 6 +  18854210 AAGAAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58079547 6 -  94987271 AAAAGC
i mm10.chr17               C 0 I 151
s dasNov3.JH580105            24295 6 -     45298 AAAAAG
i dasNov3.JH580105         C 0 C 0
e canFam3.chr35            26318437 451 +  26524999 I
e cebCap1.NW_016107755v1     867162 9 -   1771730 I
e calJac3.chr4             30422801 0 + 171630274 C

a score=88315.000000
s hg38.chr6_GL000254v2_alt  1448303 7 +   4827813 AAAAACA
s panTro5.chr6             30317673 7 + 175400573 AAAAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30552133 7 + 173848474 AAAAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     259108 7 +   2037526 AAAAACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74926119 7 + 122973662 AAAAACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805716 7 + 172585720 AAAAACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095202 7 - 170955103 AAAAACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     344057 7 +   1495729 AAAAACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441970 7 -    863181 AAAAACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29594139 7 -  71996105 AAAAACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286968 7 -    735854 AAAAACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232450 7 -   1829203 AAAAACA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           237258 7 +    515838 AAAAACA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     361745 7 -    383796 AAAGACA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               323079 7 + 123392446 AAAAACA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     129246 7 -   1411461 AAAAACA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           278707 7 +  18854210 AAAAGTA
i otoGar3.GL873550         C 0 I 368
s dasNov3.JH580105            24301 7 -     45298 GAAAACG
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58079553 151 -  94987271 I
e canFam3.chr35            26318437 451 +  26524999 I
e cebCap1.NW_016107755v1     867162 9 -   1771730 I
e calJac3.chr4             30422801 0 + 171630274 C

a score=121139.000000
s hg38.chr6_GL000254v2_alt  1448310 11 +   4827813 -AGCACCCTGCC
s panTro5.chr6             30317680 11 + 175400573 -AGCACCCTGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30552140 11 + 173848474 -AGCACCCTGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     259115 11 +   2037526 -AACACCCTGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74926126 11 + 122973662 -ACCACCCTGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805723 11 + 172585720 -AGCGCCCTGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095209 11 - 170955103 -AACACCCTGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     344064 11 +   1495729 -AGCGCCCTGCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441977 11 -    863181 -AGCACCCTGCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29594146 11 -  71996105 -AGCACCCTGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286975 11 -    735854 -AGCGCCCTGCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232457 11 -   1829203 -AGCACCCTGCC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           237265 11 +    515838 -AGCACCCTGCC
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     361752 11 -    383796 -AGCACCCTGCC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               323086 11 + 123392446 -AGCACCCTGCC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     129253 11 -   1411461 -AGCACCCTGCC
i proCoq1.NW_012149775v1   C 0 C 0
s dasNov3.JH580105            24308 12 -     45298 AACCCCTCCGTC
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58079553 151 -  94987271 I
e canFam3.chr35            26318437 451 +  26524999 I
e otoGar3.GL873550           278714 368 +  18854210 I
e cebCap1.NW_016107755v1     867162  9 -   1771730 I
e calJac3.chr4             30422801  0 + 171630274 C

a score=13923.000000
s hg38.chr6_GL000254v2_alt  1448321 1 +   4827813 A
s panTro5.chr6             30317691 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30552151 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     259126 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74926137 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805734 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095220 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     344075 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441988 1 -    863181 A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29594157 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286986 1 -    735854 A
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232468 1 -   1829203 A
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           237276 1 +    515838 A
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     361763 1 -    383796 A
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               323097 1 + 123392446 A
i micMur3.chr6             C 0 I 48
s proCoq1.NW_012149775v1     129264 1 -   1411461 A
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           279082 1 +  18854210 A
i otoGar3.GL873550         I 368 C 0
s dasNov3.JH580105            24320 1 -     45298 A
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58079553 151 -  94987271 I
e canFam3.chr35            26318437 451 +  26524999 I
e cebCap1.NW_016107755v1     867162 9 -   1771730 I
e calJac3.chr4             30422801 0 + 171630274 C

a score=466420.000000
s hg38.chr6_GL000254v2_alt  1448322 52 +   4827813 TCATCAATCAGAACAGTCAATGGTTCTCAGTGGGACCCATTCCCCACCCAGG
s panTro5.chr6             30317692 52 + 175400573 TCATCAATCAGAACAGTCAATGGTTCTCAGTGGGACCCATTCCCCACCCAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30552152 52 + 173848474 TCATCAATCAGAACAGTCAATGGTTCTCAGTGGGACCCATTCCCCACCCAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     259127 52 +   2037526 TCATCAATCAGAACAGTCAATGGTTCTCAGTGGGACCCATTCCCCACCCAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74926138 52 + 122973662 TCATCAATCAGAACAGCCAATTGTTCTCAGTGGGGACCATTCCCCACCCAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805735 52 + 172585720 TCATCCATCCCAACAGTCAATGGTTCTCAGTGGGGCCTATTCCCCACCCAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095221 52 - 170955103 TCATCCATCCGAACAGTCAATGGTTCTCAGTGGGGCCTATTCCCCACCCAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     344076 52 +   1495729 TCATCCATCTGAACCGTCAATGGTTCTCAGTGGGGCCTATTCCCCACCCAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     441989 52 -    863181 TCATCTATCCGAACAGTcaatggttctcagtggggtctattccccacccaag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29594158 52 -  71996105 TCATCCATCCGAACAGTCAATGGTTCTCAGTGGGGCCTATTCCCCACCCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     286987 52 -    735854 TCATCCATCCGAACAGTCAATGGTTCTCAGTGGGGCCTGTTCCCCACCCAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232469 52 -   1829203 TCATCCATCCAAACAGTCAATGGTTCTCAGTGGGGCCTATTCCCCACCCAGG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           237277 52 +    515838 CCATCAATCAGAACTGTTAATGGTTCTCAATGGGGTCCATTCCCTACCCTTG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     361764 52 -    383796 CCATCAATCAGAACTGTTaatggttctcaacggggtccattccccgcccttg
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     129265 51 -   1411461 -CATCCGTAAGAACAGAGAGTGGTCCTCAATGGGGACCATCTCCCACTCACA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           279083 52 +  18854210 CCATCAATAAGAACACTCAGTGGTCCTCAGTGGAGACCATCTCCCACTTACA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            24321 49 -     45298 TCAGCAAGCGCGACTGTCGGCGCTTCTCAGTGGGGC---TGCCCCCCCCAGG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               323098 48 + 123392446 I
e mm10.chr17               58079553 151 -  94987271 I
e canFam3.chr35            26318437 451 +  26524999 I
e cebCap1.NW_016107755v1     867162  9 -   1771730 I
e calJac3.chr4             30422801  0 + 171630274 C

a score=490607.000000
s hg38.chr6_GL000254v2_alt  1448374 44 +   4827813 GGGAAGTGTGGAAACCTTTCAGGTTGTCTCAGTGACAACAAGAG
s panTro5.chr6             30317744 44 + 175400573 GGGAAGTGTGGAAACCTTTCAGGTTGTCTCAGTGACAGCAAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30552204 44 + 173848474 GGGAAGTGTGGAAACCTTTCAGGTTGTCTCAGTGACAGCAAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     259179 44 +   2037526 GGGAAGTGTGGAAACCTTTCAGGTTGTCTCAGTGACAACAAGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74926190 44 + 122973662 GGGAAGTGTGGAAACCTTTCAGGTTGTCTCAGTGACAACAAGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805787 44 + 172585720 GGGAAGTGTGGAAACCTTTCAGGCTGTCTCAGTGACAACAAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095273 44 - 170955103 GGGAAGTGTGGAAACCTTTCAGGTTGTCTCAGTGACAACAAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     344128 44 +   1495729 GGGAAGTGTGGAAACCTTTCAGGTTGTCTCAGTGACAACAAGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     442041 44 -    863181 gggaagtgtggaaacctttcaggttgtctcagtgacaacaagaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29594210 44 -  71996105 GGGAAGTGTGGAAACCTTTCAGGTTGTCTCAGTGACAACAAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     287039 44 -    735854 GGGAAGTGTGGAAACCTTTCAGGTTGTCTCAGTGACAACAAGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232521 44 -   1829203 GGGAAGTGTGGAAACCTTTCAGGTTGTCTCAGTGACAACAAGAA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           237329 44 +    515838 GGGAAGTGTTGAAACCTGTCAGGTTGTCTCAGTGACAGCAGAAG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     361816 44 -    383796 gggaagtgttgaaacctttcaggttgtctcagtgacagcagaag
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               323146 44 + 123392446 GGGAAGTGGGCAAACCTTTAAGATTGTCTCAGTGACAGCAAGAG
i micMur3.chr6             I 48 I 1373
s proCoq1.NW_012149775v1     129316 44 -   1411461 AGGAAGTGGGGAAACCTTTCAGATTGTCTCAGTGACAGCAAGAG
i proCoq1.NW_012149775v1   C 0 I 1
s otoGar3.GL873550           279135 44 +  18854210 GGGAAGAGTGGAAGTGTTTCAGATGATCTCAGGGACAGCAGGAG
i otoGar3.GL873550         C 0 I 1
s dasNov3.JH580105            24370 19 -     45298 -----------------------TGGTCTC--CGACGGCAGGAG
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58079553 151 -  94987271 I
e canFam3.chr35            26318437 451 +  26524999 I
e cebCap1.NW_016107755v1     867162  9 -   1771730 I
e calJac3.chr4             30422801  0 + 171630274 C

a score=1176872.000000
s hg38.chr6_GL000254v2_alt  1448418 129 +   4827813 TGTGGTTCTCTACTGGCTTATAGGGCTTTCTGGGGCCTGGGATACTAAGCATTTAACAGGGCAAAAGTCATGGAGCATAACAAAGAT--GGCCTTTCTAAACACC-GGTAGCTCCTTTTGTGGAGAAATGCT
s panTro5.chr6             30317788 129 + 175400573 TGTGGTTCTCTACTGGCTTATAGGGCTTTCTGGGGCCTGGGATACTAAGCATTTAACAGGGCAAAAGTCATGGAGCATAACAAAGAT--GGCCTTTCTAAACACC-AGTAGCTCCTTTTGTGGAGAAATGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30552248 129 + 173848474 TGTGGTTCTCTACTGGCTTATAGGGCTTTCTGGGGCCTGGGATACTAAGCATTTAACAGGGCAAAAGTCATGGAGCATAACAAAGAT--GGCCTTTCTAAACACC-AGTAGCTCCTTTTGTGGAGAAATGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     259223 128 +   2037526 TGTGGTTCTCTACTGGCTTATAGGGCTTTCTGGGGCCTGGGATACTAAGCATTTAACAGGGCAAAAGTCATGGAGCATAACAAAGAT--GGCCTTTCTAAACACC-GGTAGCTCCTTTT-TGGAGAAATGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74926234 129 + 122973662 GGTGGTTCTCTACTGGCTTATAGGGCTTTCTGGGGCCTGGAATGCTAAGCATTTAACAGGGCAAAAGTCATGGAGCATAAAAAAGAT--GGCCTTTCTAAACACC-GGTAGCTCCTTTCGTGGAGAAATGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805831 129 + 172585720 GGGGCTTCTCTACTGGCTTATAGGGCTTTCTGGGGCCTGGGATGCTAAGCATTTAACAGGGCAAAAGTCATGGAGCTTCACAAAGAC--GGCCTTTCTAAACACC-GGTAGCTCCTTTCATGGAGAAATGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095317 129 - 170955103 GGGGGTTCTCTACTGGCTTATAGGGCTTTCTGGGGCCTGGGATGCTAAGCATTTAACAGAGCAAAAGTCATGGAGCATCACAAAGAC--GGCCTTTCTAAACACC-GGTAGCTCCTTTCATGGAGAAATGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     344172 129 +   1495729 GGGGGTTCTCTACTGGCTTATAGGGCTTTCTGGGGCCTGGGATGCTAAGCATTTAACAGGGCAAAAGTCATGGAGCTTCACAAAGAT--GGCCTTTCTAAACACC-GGTAGCTCCTTTCATGGAGAAATGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     442085 129 -    863181 gggggttctctactggcttatagggctttctggggcctgggatgctaagcatttaacagggcaaaagtcaTGGAGCATCACAAAGAC--GGCCTTTCTAAACACC-GGTAGCTCCTTTCATGGAGAAATGCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29594254 129 -  71996105 GGGGCTTCTCTACTGGCTTATAGGGCTTTCTGGGGCCTGGGATGCTAAGAATTTAACAGGGCAAAAGTCATGGAGCATCACAAAGAC--GGCCTTTCTAAACACC-GGTAGCTCCTTTCATGGAGAAATGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     287083 129 -    735854 GCGGGTTCTCTACTGGCTTATAGGGCTTTCTGGGGCCTGGGATGCTAAGCATTTAACAGGGCAAAAGTCATGGAGCATCACAAAGAC--GGCCTTTCTAAACACT-GGTAGCTCCTTTCATGGAGAAATGCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232565 130 -   1829203 GGGGGTTCTCTACTGGCTTATAGGGCTTTCTGGGGCCTGGGATGCTAAGCACTTCACAGGGCAAAAGTCATGGAGCATCACAAAGAC--GGCCTTTCTAAACACCGGGTAGCTCCTTTCATGGAGAAATGCT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           237373 129 +    515838 GAGGGTTCTCTACTGGCTTATAGTGCTTTCCGGGGCCTGGGATGCTAAGCATTTAACAGGTCAAAAACCGTGGAGCATAATAAAGAC--GGCCTTTCTAAACACC-AGTAGCTCCTTTCATGGAGAAATGCT
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     361860 129 -    383796 gaaggttctctactggcttatagtgctttctggggcctgggatgctaagcatTTAACAGGGCAAAAATCGTGGAGCATAATAAAGAT--GGCCTTTCTAAACACC-AGTAGCTCCTTTCATGGAGAAATGCT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     129361 131 -   1411461 GGGACTTCTCTGCTGGCCGGTAGTGCTTCCTGGGACCTGGGATGTTAAACATTCAACAGAGCACAAGTCATGGAGCACGATGAAGACTTAGCCTCTCCCAATGCC-AGTAGCTCCTTCTGTGGAGAAACGCT
i proCoq1.NW_012149775v1   I 1 C 0
s otoGar3.GL873550           279180 110 +  18854210 TGGGTATCTCTACTGACCTGTAGTGTGTCCTGGGGCCTGGGATGTTAAACATTCAACAGAGCACAAGTCATGCAATACAACAAAGAC--AGCCTCTCCAGATGCC-AG-------------------ACACT
i otoGar3.GL873550         I 1 C 0
s dasNov3.JH580105            24389  82 -     45298 -GGGGCTCTCGGCTGGCCTTGAGTGCCCCCCGGGTCT----------------------GGAAACGGTCACAGAGCACAACCAGGAC--TCCC----------CT-GG------------TGGGAAGGCG--
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               323190 1373 + 123392446 I
e mm10.chr17               58079553 151 -  94987271 I
e canFam3.chr35            26318437 451 +  26524999 I
e cebCap1.NW_016107755v1     867162   9 -   1771730 I
e calJac3.chr4             30422801   0 + 171630274 C

a score=3743377.000000
s hg38.chr6_GL000254v2_alt  1448547 349 +   4827813 GGTGGAATAGGATCCCTAAATCCTGCTCTCTGGCTTTGGAATGCAT------TCTGTAGTTTCTggctttggagaaaggagttctaattctctctctttcacttaatgatcatatgacctgggtaacttacctcccctcccggaagctacatgg-------acctcac-tgtaagttgcagataataacacctatcttggaggatagttgtggggttttgaaatattagatgcg----------cacatagtggtcctttaagaaatggtacttctactgttATTGTCTTAGGTGGCAGAACCATATCTAATGACTTTAGCACAGGCTGTTATTACAGTGGGTCTCCAT-CCCCTGAGCTGTACTGAC----CTCACA
s panTro5.chr6             30317917 346 + 175400573 GGTGgaataggatccctaaatcctgctctctggctttggaatgcat------tctgtagtttctggctttggagaaaggagttctgattctctctctttcacttaataatcatatgacctgggtaacttacctcccctcccggaagctacatgg-------acctcac-tgtaagttgcagataataacacctatcttggaggatagttgtggggttttgaaatattagatgcg----------gacatagtggtcctttaagaaatggtacttct---gttattatcttaggtggcagaaccatatctaatgactttagcacaggctgttattacagtgggtctccat-cccctgagctgtactgac----ctcaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30552377 346 + 173848474 GGTGgaataggatccctaaatcctgctctctggctttggaatgcat------tctgtagtttctggctttggagaaaggagttctgattctctctctttcacttaataatcatatgacctgggtaacttacctcccctcccggaagctacatgg-------acctcac-tgtaagttgcagataataacacctatcttggaggatagttgtggggttttgaaatattagatgcg----------gacatagtggtcctttaagaaatggtacttct---gttattatcttaggtggcagaaccatatctaatgactttagcacaggctgttattacagtgggtctccat-cccctgagctgtactgac----ctcaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     259351 349 +   2037526 GGTGgaataggatccctaaatcctgctctctggctttggaatgcat------tctgtagtttctggctttggagaaaggagttctaattctctctctttcacttaataatcatatgacctgggtaacttacctcccctcccggaagctgcatgg-------acctcac-tgtaagttgcagataataacacctatcttggaggatagttgtggggttttgaaatattagatgcg----------cacatagtggtcctttaagaaatggtacttctactgttATTATCTTAGGTGGCAGAACCATATCTAATGACTTTAGCACAGGCTGTTATTACAGTGGGTCTCCGT-CCCCTGAGCTGTACTGAC----CTCACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74926363 355 + 122973662 GGTGgaataggatccgtaaatcctgctctctggctttggaatgcattctgtATCTGTAGTTTCTggctttggagaaatgagttctaattctctctctttcacttagtaatcatatgacctggctaacttacctcccctcccggaagctatgtgg-------acctcac-tgtaagttgcagataataacacctaccttggaggatagttgtggggttttgaaatattagatgtg----------tacatagtggtcctttaagaaacggtacttctactgttATTATCTTAGGTGGCAGAACCATAGCTAATGACTTTAGCACAGGCTGTTATTACAGTGGGTCTCCAT-CCCCTGAGCTGTCCTGAC----CTCACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30805960 349 + 172585720 GGTGGAATAGGATCCCTAAATCCTGCTCTCTGGCTTTGGCATGTGT------TGTGTAGTTTCTggctttggagaaaggcgttctaattctctctctttcacttaataatcatatgacctggataacttaccacccatcccggaagctgcatgg-------acctcac-tgtaagttgcagatagtaacacctaccttggaggatagttgtggggttttgaaatattagatgtg----------catataGTGGTCCTTTAAGAAACGGTACTTCTACTGTTATTATCTTAGGTGGCAGAACCATCTCTAATGACTTTAGCACAAGCTGTTATTACAGTGGGTCTCCAT-CCCCTGACCTGTCCTGAC----CTCACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095446 343 - 170955103 GGTGAAATAGGATCCCTAAATCCTGCTCTCTGGCTTTGGCATGTGT------TGTGTAGTTTCTggctttggagaaaggagttctaattctctctctttcacttaataatcatatgacctggataacttacctcccctcccggaagctgcatgg-------acctcac-tgtaagttgcagatagtaacacctaccttggaggatagttgtggggttttgaaatattagatgtg----------catataGTGGTCCTTTAAGAAACGG------TACtgttattatcttaggtggcagaaccatctctaatgactttagcacaggctgttattacagtgggtctccat-cccctgagctgtcctgac----ctcaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     344301 343 +   1495729 GGTGAAATAGGATCCCTAAATCCTGCTCTCTGGCTTTGGCATGTGT------TGTGTAGTTTCTggctttggagaaaggagttctaattctctctctttcacttaataatcatatgacctggataacttacctcccctcccggaagctgcatgg-------acctgac-tgtaagttgcagatagtaacacctaccttggaggatagttgtggggttttgaaatattagatgtG----------CATATAGTGGTCCTTTAAGAAACGG------TACTGTTATTATCTTAGGTGGCAGAACCATCTCTAATGACTTTAGCACAGGCTGTTATTACAGTGGGTCTCCAT-CCCCTGAGCTGTCCTGAC----CTCACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     442214 349 -    863181 GGTGAAATAGGATCCCTAAATCCTGCTCTCTGGCTTTggcatgcgt------tgtgtagtttctggctttggagaaaggagttctaattctctctctttcacttaataatcatatgacctggataacttacctcccctcccggaagctgcatgg-------acctcac-tgtaagttgcagatagtaacacctaccttggaagatagttgtggggttttgaaatattagatgtg----------catataGTGGTCCTTTAAGAAACGGTACTTCTACtgttattatcttaggtggcagaaccatctctaatgactttagcacaggctgttattacagtgggtctccat-cccctgagctgtcctgac----ctcaca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29594383 349 -  71996105 GGTGGAATAGGATCCCTAAATCCTGCTCTCTGGCTTTGGCATGCGT------TGTGTAGTTTCTggctttggagaaaggagttctaattctctctctttcacttaataatcatatgacctggataacttacctcccctcctggaagctgcatgg-------acctcac-tgtaagttgcagatagtaacacctaccttggaggatagttgtggggttttgaaatattagatgtg----------catataGTGGTCCTTTAAGAAACGGTACTTCTACTGTTATTATCTTAGGTGGCAGGACCATCTCTAATGACTTTAGCACAGGCTGTTATTACAGTGGGTCTCCAT-CCCCTGAGCTGTCCTGAC----CTCACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     287212 349 -    735854 GGTGGAATAGGATCCCTAAATCCTGCTCTCTGGCTTTGGCATGCGT------TGTGTACTTTCTggctttggagaaaggagttctaattctctctctttcacttaataatcatatgacctggataacttacctcccctcccggaagctgcatgg-------acctcac-tgtaagttgcagatagtaacacctaccttggaggatagttgtggggttttgaaatattagatgtg----------catataGTGGTCCTTTAAGAAACAGTACTTCTACtgttattatcttaggtggcagaaccatctctaatgactttagcacaggctgttattacagtgggtctccat-cccctgagctgtcctgac----ctcaca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     232695 349 -   1829203 GGTGGAATAGGATCCCTAAATCCTGCTCTCTGGCTTTGGCATGCGT------TGTGTAGTTTCTggctttggagaaaggagttctaattctctctctttcacttaataatcatatgacctggctaacttacctcccctcctggaagctgcatgg-------acttcac-tgtaagttgcagatagtaacacctaccttggaggatagttgtggggttttgaaatattagatgtG----------CATATAGTGGTCCTTTAAGAAACAGTACTTCTACTGTTATTATGTTAGGTGGCACAACCATCTCTCATGACTTTAGCACAGGCTGTTATTACAGTGGGTCTCCAT-CCCCTGAGCTGTCCTGAC----CTCACA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           237502 340 +    515838 GGTGGAGTAGGATCCGTAAATCCTGCTCTCTGGCTTGGGAATGCAT------TGTATAGTTTCTggctttggagaaagaagttcaaattctgcctctttcatttaataatcatacgacctgggtaacttacctcccctccctgaagccacatgg-------acctcac-tgtaagttgcagataataacacctaccatggaggatagttgtggggttttgaaacactagatgtg----------ca---------cttTTCAGAAATGGTACTTCTACTGTTATCATCTTCGGTGGCAAAACCATCTCTAATAACTTTAACACAGGCTGCTATTACACTGGGTCTCCAT-CCCCTGAGCTGTCCTGAC----CTCACA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     361989 340 -    383796 GGTGGAGCAGGATCCGTAAATCCTGCTCTCTGGCTTGGGAATCCAT------TGTATAGTTCCTggctttggagaaagaagttctatttctgcctctttcatttaataatcatacgacctgggtaacttacctcccgtccctgaagccacacgg-------acctcac-tgtaagttgcagataataacacctaccttggaggatagttgtggggttttgaaacactagatgtg----------ca---------cttTTAAGAAATGGTACATCTACTGTTATTATCTTAGGTGGCAAAACCATCTCTAATAACTTTAACACAGGCTGTGATTACAGTGGGTCTCCAA-CCCCTGAGCTGTCCTGAC----CTCATA
i aotNan1.NW_018496904v1   C 0 I 63
s micMur3.chr6               324563 339 + 123392446 GGTGGAAgagagtccctaaatcctgctctctggctttggaatgcag------tatgtagtttctggctttggagaaatgagttct-attctgtctccttcacttaatagt-acatgacctaggtaacttaccttacctccctggagttacatgg-------gtctcat-tgcaaattgcagataataacacttaccttggaggatagttgtagggttttgaaatgttgg------------------atagtgGTCCTTTAAGAAATGGTACTTCTAGTGTTACCATTTCAGGTGGCAGAACCATCTCTGATGACTTCAGCACAGGCTGTCATTACAGTGGGTCTCCAT-CCCCTGAGCTGTCCTGAC----CTCTCA
i micMur3.chr6             I 1373 C 0
s proCoq1.NW_012149775v1     129492 369 -   1411461 GGT-GAACAGaatccctaaatcctgctctctggctttgcaatgcat------tatgtagtttctggctttggagaaatgagttctaattctgtctctttcacttaatagc-acgtgacctaggtaactaaccttacctccctggagttacatgggaactctgtctcat-tgcaaattgcaaataataacactcatcttggagaatacttgtggagttttgaaatattgaatgtgggatgcttaacacatagtggtcctttaagaaatggtacttctTGTGTTGTCATCTCAGGTGGGAGAACCATCTCTGCTGACTTCAGCACAGGCTGTTATTACAGTGGGTCTCCATCCCCCCGAGCTGTCCTGACCTCTCTCTCA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           279290 354 +  18854210 GGTGGAAAAGAATCCCTAAATTCTTCTCTGTGGCTTTGGAATGCAT------TAGGTAGTTTCTggctttggagaaatgagttctaattctatctctttaacttcatagt-acttgacctaggtaacttacctcacctctctggagttacatga-------gctgtct-tgtaaattgcat---ataacacttgtctgggaggatagttgtaaggttttgaaatattgaatgtgggcttatcaacacatagtggtcctttaagaaatgatactt-ttatGTTGCCATCTCAGGTGGCAGAACCATCTCTGATGACTTTAGCGCAGGCTGTTATTATAGTGGGTCTCCAT-TCCCTGAGCTGTCCTGAC----CTCACA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            24471 312 -     45298 GGTGGGCGAGGGCCCGAGACAC---------GGCTCCGGAA-GCAC------CACGGAGCCCCTGCCTCTGCGGAAGCGGCCTctggatctgcctcctccacat-gtggtcaca-gacctg------taacgtcaccgccccggagcctcaggg-------accccccttgtaaactgaaggtag-accatctgccttg----agagttgtggggttt--gagtactggacgtggggtgcttggcgcaCGGTGGACCTGTTAGAAACGGCGATTCTAGTTCGACC--------------------CTCCGGTGACCTTGGCACGAGCTGC-GTTACAGCGGGACCC--T-CCCCTGAGCTGCCTTCGC----CTCTCA
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58079553 151 -  94987271 I
e canFam3.chr35            26318437 451 +  26524999 I
e cebCap1.NW_016107755v1     867162   9 -   1771730 I
e calJac3.chr4             30422801   0 + 171630274 C

a score=241914.000000
s hg38.chr6_GL000254v2_alt  1448896 17 +   4827813 CCCAGAGGAGTTTGCCT
s panTro5.chr6             30318263 17 + 175400573 cccagaggagtttgcct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30552723 17 + 173848474 cccagaggagtttgcct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     259700 17 +   2037526 CCCAGAGGAGTTTGCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74926718 17 + 122973662 CCCAGAGGAGTTTGCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30806309 17 + 172585720 CCCAGAGGAGTTTGCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095789 17 - 170955103 cccagaggagtttgccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     344644 17 +   1495729 CCCAGAGGAGTTTGCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     442563 17 -    863181 cccagaggagtttgccc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29594732 17 -  71996105 CCCAGAGGAGTTTGCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     287561 17 -    735854 cccagaggagtttgccc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     233044 17 -   1829203 CCCAGAGGAGTTTGCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30422801 17 + 171630274 CCCAGAGGAGTTTGTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           237842 17 +    515838 CCCAGAGGAGTTTGTCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     867171 17 -   1771730 CCCAGAGGAGTTTGTCC
i cebCap1.NW_016107755v1   I 9 C 0
s aotNan1.NW_018496904v1     362392 17 -    383796 CCCAGAGGAGTTTGTCC
i aotNan1.NW_018496904v1   I 63 C 0
s micMur3.chr6               324902 17 + 123392446 CCCAGAGGACCATTGCC
i micMur3.chr6             C 0 I 12
s proCoq1.NW_012149775v1     129861 17 -   1411461 CCCAGAGGAGCTTTCCC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           279644 17 +  18854210 CCCAGAGGAATTTGCCT
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            24783 10 -     45298 CCCAGAGGCG-------
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58079553 151 -  94987271 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=172916.000000
s hg38.chr6_GL000254v2_alt  1448913 16 +   4827813 CGAAACCTGC----TGCCCT-
s panTro5.chr6             30318280 16 + 175400573 cgaaacctgg----tgCCCT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30552740 16 + 173848474 cgaaacctgg----tgCCCT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     259717 16 +   2037526 CGAAACCTGG----TGCCCT-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74926735 16 + 122973662 CGAAACCTGG----TGCCCT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30806326 16 + 172585720 AGAAACCTGG----TGCCCT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095806 16 - 170955103 agaaacctgg----tgCCCT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     344661 16 +   1495729 AGAAACCTGG----TGCCCT-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     442580 16 -    863181 agaaacctgg----tgCCCT-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29594749 16 -  71996105 AGAAACCTGG----TGCCCT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     287578 16 -    735854 agaaacctgg----tgCCCT-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     233061 16 -   1829203 AGAAACCTGG----TGCCCT-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30422818 16 + 171630274 AGAAACCTGG----TGCCCT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           237859 16 +    515838 AGAAACCTGG----TGCCCT-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     867188 16 -   1771730 AGAAACCTGG----TGCCCT-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     362409 16 -    383796 GGAAGCCTGG----TGACCT-
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     129878 20 -   1411461 AGAAACCTGGCATGTGCCGG-
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           279661 20 +  18854210 AGAAACCTGGGGTATGGCCA-
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            24793 12 -     45298 -----ACCGG----CACCCGC
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               324919 12 + 123392446 I
e mm10.chr17               58079553 151 -  94987271 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=892900.000000
s hg38.chr6_GL000254v2_alt  1448929 69 +   4827813 -------GTAGGGGCAGCAAATACTACAGAGGTGGAGCTGCCT-CCTTCTTGTCCCACTTTTT-CCTCCCTGTCTCTA-
s panTro5.chr6             30318296 69 + 175400573 -------GTAGGGGCAGCAAATACTACAGAGGTGGAGCTGCCT-CCTTCTTGTCCCACTTTTT-CCTCCCTGTCTCTA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30552756 69 + 173848474 -------GTAGGGGCAGCAAATACTACAGAGGTGGAGCTGCCT-CCTTCTTGTCCCACTTTTT-CCTCCCTGTCTCTA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     259733 69 +   2037526 -------GTAGGGGCAGCAAATACTACAGAGGTGGAGCTGCCT-CCTTCTTGTCCCACTTTTT-CCTCCCTGTCTCTA-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74926751 68 + 122973662 -------GTAGGGA-AGCAAATACTACAGAGGTGGAGCTGCCT-CCTTCTTGTCCCACTTTTT-CCTCTTTGTCTCTA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30806342 69 + 172585720 -------GTAAGGGCAGCGAATACTACAGAGGTGGAGCTGCCT-CCTTCTTGTCCCACTTTTT-CCTCCCTGTCTCTA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095822 69 - 170955103 -------GTAAGGGCAGCGAATACTACAGAGGTGGAGCTGCCT-CCTTCTTGTCCCACTTTTT-CCTCCCTGTCTCTA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     344677 69 +   1495729 -------GTAAGGGCAGCGAATACTACAGAGGTGGAGCTGCCT-CCTTCTTGTCCCACTTTTT-CCTCCCTGTCTCTA-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     442596 69 -    863181 -------GTAAGGGCAGCGAATACTACAGAGGTGGAGCTGCCT-CCTTCTTGTCCCACTTTTT-CCTCCCTGTCTCTA-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29594765 69 -  71996105 -------GTAAGGGCAGCGAATACTACAGAGGTGGAGCTGCCT-CCTTCTTGTCCTACTTTTT-CCTCCCTGTCTCTA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     287594 69 -    735854 -------GTAAGGGCAGCGAATACTACAGAGGTGGAGCTGCCT-CCCTCTTGTCCCACTTTTT-CCTCCCTGTCTCTA-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     233077 69 -   1829203 -------GTAAGGGCAGCGAATACTACAGAGGTGGATTTGCCT-CCTTCTTGTCCCACTTTTT-CCTCCCTGTCTCTA-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30422834 67 + 171630274 -------GTAGGG--GGCGGATACTACAGAGGTGGGGCTGCCC-CCTTCATGTCCCGCTTTTT-CTTCTCTGTCTTTA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           237875 68 +    515838 -------GTAGGG-CGGTGAATACTACAGAGATGAAGCTGCCT-CCTTCTTGTCCCGCTTTTT-CTTCTCTGTCTCTA-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     867204 67 -   1771730 -------GTGGGG--GGCGAATACTACAGAGGTGGAGCTGCCT-CCTTCTTGTCCCGCTTTTT-CTTCTCTGTCTCTA-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     362425 69 -    383796 -------GTAGGGGCGGCGAATACTACAGACGCGGAGCTGCCT-CCTTCTCGTCCCACGTTTT-CTTCTCTGTCTCTA-
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               324931 68 + 123392446 -------GTAGGG-CAGCTAACACTGCAGAGATTGAGCTGCCT-CCTCCTTGTCCCACTTTTT-CCTTCCTGTCTTTA-
i micMur3.chr6             I 12 C 0
s proCoq1.NW_012149775v1     129898 68 -   1411461 -------GTATGG-CAGCTAATACTACAGAGGTTGAGCTGTCT-CCTCCTTGTCCCACCTTTT-CCTTCCTATCTTTA-
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           279681 69 +  18854210 -------GTAGAG-CAGCTAATACCATAGAGGTTGAGCTGCCTGCCTCCCTGTCACATCTTTT-CCTCCCTGTCTTCA-
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            24805 69 -     45298 GTGGGCCGGAGGG-CGGCTACTGCCTCAG--------CTGCAC-CCCACCCCCCTCACCCCTTGCCCTCCTTTCTCTGA
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58079553 151 -  94987271 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=688549.000000
s hg38.chr6_GL000254v2_alt  1448998 46 +   4827813 GGAGTGAAGAAATACATTTGTAA-TTTTCTATTACTTCTGAATACTT
s panTro5.chr6             30318365 46 + 175400573 GGAGTGAAGAAATACATTTGTAA-TTTTCTATTACTTCTGAATACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30552825 46 + 173848474 GGAGTGAAGAAATACATTTGTAA-TTTTCTATTACTTCTGAATACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     259802 46 +   2037526 GGAGTGAAGAAATACATTTGTAA-TTTTCTATTACTTCTGAATACTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74926819 46 + 122973662 GGAGTGAAGAAATACATTTGTAA-TTTTCTATTACTTCTGAATACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30806411 46 + 172585720 TGAGTGAAGAAATACATTTGTAA-TTTTCTATTACTTCTGAATACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095891 46 - 170955103 TGAGTGAAGAAATACATTTGTAA-TTTTCTATTACTTCTGAATACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     344746 46 +   1495729 TGAGTGAAGAAATACATTTGTAA-TTTTCTATTACTTCTGAATACTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     442665 46 -    863181 TGAGTGAAGAAAAACATTTGTAA-TTTTCTATTACTTCTGAATACTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29594834 46 -  71996105 TGAGTGAAGAAATACATTTGTAA-TTTTCTATTACTTCTGAATACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     287663 46 -    735854 TGAGTGAAGAAATACATTTGTAA-TTTTCTATTACTTCTGAATACTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     233146 46 -   1829203 TGAGTGAAGAAATACATTTGTAA-TTTTCTATTACTTCTGAATACTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30422901 46 + 171630274 GGAGTGAAGAAATAAATTTATAA-TTTTCTACTACTTCTAAATACTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           237943 45 +    515838 -GAGTGAAGAAATAAATTTATAA-TTTTCTACTACTTCTAAATACTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     867271 46 -   1771730 GGAGTGAATAAATAAATTTATAA-TTTTCTACTACTTCTAAATACTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     362494 46 -    383796 GGAGTGAATAAATAAATTTATAA-TTTTCTACTACTTCTAAATACTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               324999 46 + 123392446 GAAATAAAGAAATAAATTTATAA-TTTCCTATTACGTCTGAATATTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     129966 46 -   1411461 GAAATAAACAAATAAATTTATAA-TTTCCTATTACTTCTGAATGTTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           279750 47 +  18854210 AGAATAAAGAAATAAAGTTACCATTTTTCTATTACCTCTGAATACTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58079704 46 -  94987271 GGAACTGAGAAATGAATGTATAC-ATTTCCATTCCTCTAGAATATTT
i mm10.chr17               I 151 C 0
s dasNov3.JH580105            24874 46 -     45298 GGAGTGAGGAAATAAAGTTATAA-TTTTATATCACTTTTGAATGCTT
i dasNov3.JH580105         C 0 I 805
e canFam3.chr35            26318437 451 +  26524999 I

a score=226414.000000
s hg38.chr6_GL000254v2_alt  1449044 18 +   4827813 CAAAGTTTGGGATTA---GTG
s panTro5.chr6             30318411 18 + 175400573 CAAAGTTTGGGATTA---GTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30552871 18 + 173848474 CAAAGTTTGGGATTA---GTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     259848 18 +   2037526 CAAAGTTTGGGATTA---GTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74926865 18 + 122973662 CAAAGTTTGGGATTA---GTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30806457 18 + 172585720 CAAAGTTTGGGATTA---GTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095937 18 - 170955103 CAAAGTTTGGGATTA---GTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     344792 18 +   1495729 CAAAGTTTGGGATTA---GTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     442711 18 -    863181 CAAAGTTTGGGATTA---GTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29594880 18 -  71996105 CAAAGTTTGGGATTA---GTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     287709 18 -    735854 CAAAGTTTGGGATTA---GTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     233192 18 -   1829203 CAAAGTTTGGGATTA---GTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30422947 18 + 171630274 AAAAGTTTGGGATTC---GTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           237988 18 +    515838 TAAAGATTGGGATTA---GTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     867317 18 -   1771730 TAAAGTTTGGGATTA---GTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     362540 18 -    383796 TAAAGTTTGGGATTA---GTC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               325045 18 + 123392446 TAAAAATTGGGATTA---GTC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     130012 18 -   1411461 TAAAAATTGGGATTA---GTC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           279797 18 +  18854210 TAAAAACTGGGATTA---GTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58079750 21 -  94987271 TTTAATTAGTGAAAAGGTGTC
i mm10.chr17               C 0 C 0
e dasNov3.JH580105            24920 805 -     45298 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=5232975.000000
s hg38.chr6_GL000254v2_alt  1449062 378 +   4827813 ACTGTTTTGTGAGT-TACCTGAG-TTTAAAATAATAAAAC--AA--CCATAT-----GCCTGTT-CTCTCAATTGGCTGAGGAATCGGCATTCACTTATATCTGGCCTTC----ATGTAATCATAGAGACACA-ATTCTTCCCCTT------TTCTCACTTTCCCCAAATGGCAGAAGCAACCAACCATCATTTCTCACTTACAGCTCTTCA---------------TGTCATTTTTATTCATGCTTTTGAAGAATCTGTTTTCATCTTTTTTCCTATCAGCCTGGAGTTGGTC--TGGGGAATAAAGAATGGGATGAAATGGTGAGAGTCCAGAGGGGTTGAGCAAAGAACTCACTATCACACAGCAAGGCACTAATTTGAAATGCCTGGGAGAAGTAGAAGCTGCATTTGACTCTC
s panTro5.chr6             30318429 378 + 175400573 ACTGTTTTGTGAGT-TACCTGAG-TTTAAAATAATAAAAC--AA--CCATAT-----GCCTGTT-CTCTCAATTGGCTGAGGAATGGGCATTCACTTATATCTGGCCTTC----ATGTAATCATAGAGACACA-ATTCTTCCCCTT------TTCTCACTTTCCCCAAATGGCAGAAGCAACCAACCATCATTTCTCACTTACAGCTCTTCA---------------TGTCATTTTTATTCATGCTTTTGAAGAATCTGTTTTCATCTTTTTTCCTATCAGCCTGGAGTTGGTC--TGGGGAATAAAGAATGGGATGAAATGGTGAGAGTCCAGAGGGGTTGAGCAAAGAACTCACTATCACACAGCAAGGCACTAATTTGAAATGCCTGGGAGAAGTAGAAGCTGCATTTGTCTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30552889 378 + 173848474 ACTGTTTTGTGAGT-TACCTGAG-TTTAAAATAATAAAAC--AA--CCATAT-----GCCTGTT-CTCTCAATTGGCTGAGGAATGGGCATTCACTTATATCTGGCCTTC----ATGTAATCATAGAGACACA-ATTCTTCCCCTT------TTCTCACTTTCCCCAAATGGCAGAAGCAACCAACCATCATTTCTCACTTACAGCTCTTCA---------------TGTCATTTTTATTCATGCTTTTGAAGAATCTGTTTTCATCTTTTTTCCTATCAGCCTGGAGTTGGTC--TGGGGAATAAAGAATGGGATGAAATGGTGAGAGTCCAGAGGGGTTGAGCAAAGAACTCACTATCACACAGCAAGGCACTAATTTGAAATGCCTGGGAGAAGTAGAAGCTGCATTTGTCTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     259866 377 +   2037526 ACTGTTTTGTGAGT-TACCTGAG-TTTAAAATAATAAAAC--AA--CCACAT-----GCCTGTT-CTCTCAATTGGCTGAGGAATGGGCATTCACTTATATCTGGCCTTC----CTGTAATCATAGAGACACA-A-TCTTCCCATT------TTCTCACTTTCCCCAAATGGCAGAAGCAACGAACCATCATTTCTAACTTACAGCTCTTCA---------------TGTCATTTTTATTCATGCTTTTGAAGAATCTGTTTTCATCTTTTTTCCTATCAGCCTGGAGTTGGTC--TGGGGAATAAAGAATGGGATGAAATGGTGAGAGTCCAGAGGGGTTGAGCAAAGAACTCACTATCACACAGCAAGGCACTAATGTGAAATTCCTGGGAGAAGTAGAAGCTGCATTTGTCTCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74926883 379 + 122973662 ACTGTTTTGTGAGT-TACCCGAGTTTTAAAATAATAAAAC--AA--CCATGT-----GCCTGTT-CTTTCAATTGGCTGAGGAATGGGCATTCACTTATATCTGGCCTTC----ATGTAATCATAGAGACACA-ATTCTTCCCCTT------TTCTCATTTTCCCCAAATGGCAGGAGCAACCAACCATCATTTCTCACTTACAGCTCTTCA---------------TGTCATTTTTATTCATGCTTTTGAAGAATCTGTTTTCATCTTTTTTCCTATCAGCCTGGAGGTAGTC--TGGGGAATAAAGAATGGGATGAAATGGTGAGAGTCCAGAGGGGTTGAGCAAAGAACTCAGTATCACACAGCAAGGCACTAATTTGAAAGGCCTGGGAGAAGTAGAAGCTGCATTTGTCTCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30806475 378 + 172585720 ACTGTTTTGTGAGT-TACCTTAG-TTTAAAATAACAAAAC--AA--CCATAT-----GCCTGTT-CTCTCAATTGGCTGAGGAATGGGCATTCACTTCTATCTGGCCTTC----ATCTAATCATAGAGACACA-ATTCTTCCCCTT------TTCTCACTTTCCCCAAATGGCAGGAGCAACCAACCATCGTTTCTCACTTACAGCCCTTCA---------------TGTCATTATTATTAACGCTTTTGAAGAATCTGCTTTCATCTTTTTTCCTATCAGCCTGGAGGTGGTC--TGGGGAATAAAGAATGGGATGAAATGGTGAGAGTCCAGAGGGGTTGAGCAAAGAGCTCAGTATCACACAGCAAGGCACTGATTTGAAATGCCTGGGAGAAGTGGAAGCTGCATTTGTCTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30095955 378 - 170955103 ATTGTTTTGTGAGT-TACCTTAG-TTTAAAATAACAAAAC--AA--CCATAT-----GCCTGTT-CTCTCAATTGGCTGAGGAATGGGCATTCACTTCTATCTGGCCTTC----ATCTAATCATAGAGACACA-ATTCTTCCCCTT------TTCTCACTTTCCCCAAATGGCAGGAGCAACCAACCGTCGTTTCTCACTTACAGCCCTTCA---------------TGTCATTATTATTAACGCTTTTGAAGAATCTGCTTTCATCTTTTTTCCTATCAGCCTGGAGGTGGTC--TGGGGAATAAAGAATGGGATGAAATGGTGAGAGTCCAGAGGGGTTGAGCAAAGAGCTCAGTATCACACAGCAAGGCACTGATTTGAAATGCCTGCGAGAAGTGGAAGCTGCATTTGTCTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     344810 378 +   1495729 ACTGTTTTGTGAGT-TACCTTAG-TTTAAAATAACAAAAC--AA--CCATAT-----GCCTGTT-CTCTCAATTGGCTGAGGAATGGGCATTCACTTCTATCTGGCCTTC----ATCTAATCTTAGAGACACA-ATTCTTCCCCTT------TCCTCACTTTCCCCAAATGGCAGGAGCAACCAACTGTCGTTTCTCACTTACAGCCCTTCA---------------TGTCATTATTATTAAAGCTTTTGAAGAATCTGCTTTCATCTTTTTTCCTATCAGCCTGGAGGTGGTC--TGGGGAATAAAGAATGGGATGAAATGGTGAGAGTCCAGAGGGGTTGAGCAAAGAGCTCAGTATCACACAGCAAGGCACTGATTTGAAATGCCTGGGAGAAGTGGAAGCTGCATTTGTCTCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     442729 378 -    863181 ACTGTTTTGTGAGT-TACCTTAG-TTTAAAATAACAAAAC--AA--CCATAT-----GCCTGTT-CTCTCAATTGGCTGAGGAATGGGCATTCACTTCTATCTGGCCTTC----ATCTAATCATAGAGACACA-ATTCTTCCCCTT------TTCTCACTTTCTCCAAATGGCAGGAGCAACCAACTGTCGTTTCTCACTTACAGCCCTTCA---------------TGTCATTATTATTAATGTTTTTGAAGAATCTGCTTTCATCTTTTTTCCTATCAGCCTGGAGGTGGTC--TGGGGAATAAAGAATGGGATGAAATGGTGAGAGTCCAGAGGGGTTGAGCAAAGAGCTCAGTATCACACAGCAAGGCACTGATTTGAAATGCCTGGGAAAAGTAGAAGCTGCATTTGTCTCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29594898 374 -  71996105 ACTATTTTGTGAGT-TACCTTAG-TTTAAAATAACAAAAC--CA--CCATAT-----GCCTGTT-CTCTCAATTGGCTGAGGAATGGGCATTCACTTCTATCTGGCCTTC----ATCTAATCTTAGAGACACA-ATTCTTCCCCTT------TCCTCACTTTCCCCAAATGGCAGAAGCAACCAACTGTCGTTTCTC----ACAGCCCTTCA---------------TGTCATTATTATTAATGCTTTTGAAGAATCTGCTTTCATCTTTTTTCCTACCAGCCTGGAGGTGGTC--TGGGGAATAAAGAATGGGATGAAATGGTGAGAGTCCAGAGGGGTTGAGCAAAGAGCTCAGTATCACACAGCAAGGCACTGATTTGAAATGCCTGGGAGAAGTGGAAGCTGCATTTGTCTCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     287727 378 -    735854 ATTGTTTTGTGAGT-TACCTTAG-TTTAAAATAACAAAAC--AA--CCATAT-----GCCTGTT-CTCTCAATTGGCTGAGGAATGGGCATTCACTTCTATCTGGCCTTC----ATCTAATCATAGAGACACA-ATTCTTCCCCTT------TTCTCACTTTCCCCAAATGGCAGGAGCAACCAACCGTCGTTTCTCACTTACAGCCCTTCA---------------TGTCATTATTATTAACGCTTTTGAAGAATCTGCTTTCATCTTTTTTCCTATCAGCCTGGAGGTGGTC--TGGGGAATAAAGAATGGGATGAAATGGTGAGAGTCCAGAGGGGTTGAGCAAAGAGCTCAGTATCACACAGCAAGGCACTGATTTGAAATGCCTGGGAAAAGTAGAAGCTGCATTTGTCTCTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     233210 378 -   1829203 ACTGTTTTGTGAGT-TACCTTAG-TTTAAAATAACAAAAC--AA--CCATAT-----GCCTGTT-CGCTCAATTGGCTGAGGAATGGGCATTCACTTATATCTGGCCTTC----ATCTAATCATAGAGACACA-ATTCTTCCCCTT------TTCTCACTTTCCCCAAATGGCAGGAGCAACCAACCGTCGTTTCTCACTTACAGGCCTTCA---------------CGTCATTATTATTAATGCTTTTGAAGAATCTGCTTTCATCTTTTTTCCTATCAGCCTGGAGGTGGTC--TGGGGAATAAAGAATGGGATGAAATGGTGAGAGTCCAGAGGGGTTGAGCAAAGGGCTCAGTATCACACAGCAAGGCACTGATTTGAAATGCCTGGGAGAAGTGGAAGCTGCATTTGTCTCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30422965 367 + 171630274 GCTGTTTTGTGAGT-TGCCTGAG-TTTAAAATAATAAAAC--AA--CCACCT-----GCCTGTT-CTCTCAGTTGGCTGAGGAATGGGCGTTCACTTGCATCTGGCCTGC----ATGTAATCATAGAGACACA-ATTCTT-CCCTT------TTCTCACTTTCCCCAAATGGCAGGAGCAA-CAACCATCATTTCTCACTTACAGCTCTTCA---------------TGTCGTTTTCATTCATGCTTTTGAAGAATCTGTTTTCATCTCTTTCCCTATCAGCCTGCAGGTGGTC--TGGGGAATAAAGAATGGGATGAAATGGTG-------AGAGGGGTTGAGCGAAGGACTCCGTATCACACAGCAAGGCACGGATTTGAAATGCCTGGGAGAAATGGGAGCTACATTTA--TCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           238006 378 +    515838 ACTGCTTTGTGAGT-TGCCTAAG-TCTGAAATAATAAAAC--AA--CCATCT-----GCCTGTT-CTCTCAATTGGCTGAGGAATGGGCACTCACTTACATGTGGCCTTC----ATGCAATCACAGAGACACG-ATTCTTCCCCTT------TTCTCACTTTCCCCAAATGGCAGGAGCAATCAACCATCATTTCTCAGTTACAGCTCTTCA---------------TGGCATTTTCATTCATGCTTTTGAAGAATCTATTTTTATCTCTTTTCCTATCAGCCTGCAGGTGGTC--TGGGGAATAAAGAATGGGATGAAATGGTGAGAGTCCAGAGGGGTTGAGCAAAGGACTCCATATCACACAGCAAGGCACTGATTTGAAATGCCTGGGAGAAGTGGGAGCTGCATTTATCTCTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     867335 376 -   1771730 GCTGTTTTGTGAGT-TGCCTAAG-TTTAAAATAATAAAAC--AA--CCATCT-----GCCTGTT-CTCTCAATTGGCTGAGGAATGGGCATTCACTTACATCTGGCCTTC----ATGTAATCATAGAGACACA-ATTCTTCCCCTT------TTCTCGCTTTCCCCAAATGGCAGGAGCAATCAACCATCATCTCTCACTTACAGCTCTTCA---------------TGTCATTTT--TTCATGCTTTTGAAGAATCCGTTTTCATCTCTTTTCCTATCAGCCTGCAGGTGATC--TGGGGAACAAAGAATGGAATGAAATGATAAGAGTCCAGAGGGGTTGAGTGAAGGACTCCGTATCACACAGCAAGGCACTGATTTGAAATGCCTGGGAGAAGTGGGAGCTGCATTTATCTCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     362558 376 -    383796 ACTGTTTTGTGAGT-TGCCTGAG-TTTAAAATAATAAAACATAA--CCATCT-----GCCTGTT-CTCTCAATTGGCTGAGGAATGGGCATTCACTTACATCTGGCCTTC----GTGTAATCATAGAGACACA-ATTCTTCCCCTT------TTCTCACTTTCCCCAAATGGCAGGAGCAATCAGCCATCATTTCTCACTTACAGCTCTTCA---------------TGTCGTTTGCATTCATGCTTTTGAAGAATCTGTTTTCATCTCTTTTCCTATCAGCCTGCAGGTGGTC--TGGGGAATAAAGAATGGGATGAAATGATGAGAGTCCAGAGGGGTTGAGCGAAGGACTCCGTATCACACAGCAAGGCACTGATTTGAAATGCCTGGGAGAACTGGGAGCTGCGTTTATC----
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               325063 371 + 123392446 ACTGTTTTGTGAGT-TACCTGAG-TTTAAAATAATAAAATATAT--CCATAT-----GCCTG---TTCTCAATTGGCCAAGGAATGGGCATCCACACATATCTGGCCTTC----ACGTAAGCACAGAGACAGATTTTTTTCCCCTT-TGATCTTCTCACTTTCCCCAAATGGCAGGAGCA----------ACTTCCCACTTACAGGTCTTCA-----------------TAGTTTTCATTCATGCCTGTGAAGAATCTGTTTTCATTTTCCTTCCTATCAGCCTGTAGATTGTC--TGGGG-GTAGAGAACGTGATGAATTGGTGAGAGTCCAGAGAGGTTGAACAAAGAACCCAGCATCACACAGCAAGTCACTGATTTGGAATGCGTGGGAGAAACGGGAGCTGGATTTGTCTTTC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     130030 372 -   1411461 ACTGTTTTGTGAGT-TACCTGAG-TTTAAAATAATAAAATATAT--CCATAT-----GCCTG---TTCTCAACTGGCTGAGGAATGGGCATCCACCTGTATCTGGCCTTC----ACGTAATCACAGAGACAGA-TTTCTTCCCCTT-TGCTCTTCTCACTTTCCCCAAATGGCAGGAGCA----------ACTTCCCCCTTACAGCTCTTCA---------------CTTAGTCTTCATTCATGCCTGTGAAGAATCTGTTTTTATCTTCCTTTCTATCAGCTTGGAGGTTGGC--TGTGG-GTAGATAATGTGATGAAATGGTCACAGTCCAGAGAGGTTGAGCAAAGAACCCAGTATCACACAGCAGGGCACTGATTTGGAATGCCTGGGAGAAATGGGAGCTGGATTTGTCTCTC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           279815 355 +  18854210 ACTGTTCTGTGAGT-TACCTGAG-TTTAAAACAAGAAAACATGC--CCATAT-----GCCTATCCTTCTCAATTGGCTAAGGAATGGGCATTCA---------------C----ATGTAATCACAGACACAGA-TTTCTTCCCCTT-TGCTTTTCTCACTTTCTCCAAATGGCAGGAACAA----CCATCACTTCCCACTTACAGCTCTTAATGTAGTTTTCACTGATGCAGTTTTCATTCATGCCTTTGAAAAATCTGCTTTCATCT----------------------------TGGGG-GTAGAGAATGGGATGAAATGGTGAGAGTCCAGAGAAGTTGAGCAAAGAACCCAGTATCACACAGCAAGGCACTGACTTTAAATGCCTGAGAGAAATGGGAGCTGGATTTTTCTCTC
i otoGar3.GL873550         C 0 I 43
s mm10.chr17               58079771 350 -  94987271 ACTATCTTATGATTATCTCTAGA-TTTAAAAGGATAAAAC--AGTTCTATAA-----GCTTGTT-CTTC--------------ACTGGTGTTCACACACACTAGACCTTCCTCAACCTACCAATAAGGAGATA-A--CCTCCCCTTTTGTATTTCTCATTTTCCCCAAACAGCAGGACCAGCC-----------CAGACTTACAGCTCTCCT---------------TTTCTTCTTTATTCAGGCTGTTCATGAATGCGCTTTTATCTCTCTTCCCTTCGGCATTCATATCGTC--TGTGA-GGAGAGAGTA-AAGGAAATG--CAGAGTCCATAGAGGTTAACCAGGGAACT-AGAACCACACAGCGAGGCACTGATTT-------CTGGGAGAGGTGGGCCTGGGATTCCTCAC--
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            25725 375 -     45298 ACTGTTTTGTGAGT-TGCCCAAG-TTTAAGATAATAAAAT--TT--CCATCTGCAGGGCCTGTC-CCCCCCAGGGGCCGAGGAAGGGGCACT-GCCCACACCTGGCCCAC----AGCGAGTCCTAGAGAGCCT-TCCCCTCGGCTT------GGCTCACTTTCTCCGAATGGCAGGCACAG----CGGCCAGTTCCAACTTACAGCTCTTCA---------------GTAAGCTTTCGTTCATGCCTTTGAAGAATTTGCTTTTGTCCTTCTTCTGGTCTGCCTGGAGGTTTTCTGTGGGGAGAGAATGACGGCATGAGATGGAGAGAGCCCAGAAAGGTTCATCAGGGAAGCCAGCACCACACAGCAACGCCCT--CTGGGAATGCCCGG--AGAGGGGTTGCAGGATGAGCTTCC-
i dasNov3.JH580105         I 805 C 0
e canFam3.chr35            26318437 451 +  26524999 I

a score=190130.000000
s hg38.chr6_GL000254v2_alt  1449440 15 +   4827813 ATATTCTTATTGGAC
s panTro5.chr6             30318807 15 + 175400573 ATATTCTTATTGGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30553267 15 + 173848474 ATATTCTTATTGGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     260243 15 +   2037526 ATATTCTTATTGGAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74927262 15 + 122973662 ATATTCTTATTGGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30806853 15 + 172585720 ATATTCTTATTGGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30096333 15 - 170955103 ATATTCTTATTGGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     345188 15 +   1495729 ATATTCTTATTGGAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     443107 15 -    863181 ATATTCTTATTGGAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29595272 15 -  71996105 ATATTCTTATTAGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     288105 15 -    735854 ATATTCTTATTGGAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     233588 15 -   1829203 ATATTCTTATTGGAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30423332 15 + 171630274 ATATTCTTAGTGGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           238384 15 +    515838 ATATGCTTAGTGGAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     867711 15 -   1771730 ATATTCTTAGCAGAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     362934 14 -    383796 -TATTCTTAGTGGAC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               325434 15 + 123392446 ATATTTTTAAGGTAC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     130402 15 -   1411461 ATACTTTTAGGGTAC
i proCoq1.NW_012149775v1   C 0 C 0
s mm10.chr17               58080121 15 -  94987271 ATTGTCTCAGTGGAC
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            26100 15 -     45298 GTATTCTTAGCAGAG
i dasNov3.JH580105         C 0 C 0
e canFam3.chr35            26318437 451 +  26524999 I
e otoGar3.GL873550           280170 43 +  18854210 I

a score=1870004.000000
s hg38.chr6_GL000254v2_alt  1449455 160 +   4827813 CAGGAAGGTATGCAACCCTTGAG----AGATGCCCTTT------------------------------------------------CTGATTTCCTGT--GGTGACTGCCTAGCCCAGCACTGTCCAGTATGAATGATGAATGTAATCTGAGTCACGaatgtgagccacttatatatttttaaattttctagtagtcacatttaa--aaagtagaa
s panTro5.chr6             30318822 160 + 175400573 CAGGAAGGTATGCAACCCTTGAG----AGATGCCCTTT------------------------------------------------CTGCTTTCCTGT--GGTGGCTGCCTAGCCCAGCACTGTCCAGTATGAATGATGAATGTAATCTGAGTCACAaatgtgagccacttatatatttttaaattttctagtagtcacatttaa--aaagtagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30553282 160 + 173848474 CAGGAAGGTATGCAACCCTTGAG----AGATGCCCTTT------------------------------------------------CTGCTTTCCTGT--GGTGGCTGCCTAGCCCAGCACTGTCCAGTATGAATGATGAATGTAATCTGAGTCACAaatgtgagccacttatatatttttaaattttctagtagtcacatttaa--aaagtagaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     260258 160 +   2037526 CAGGAAGGTATGCAACCCTTGAG----AGATGCCCTTT------------------------------------------------CTGCTTTCCTGT--GGTGGCTGCCTAGCCCAGCACTGTCCAGTATGAATGATGAATGTAATCTGAGTCACAaatgtgagccacttttatatttttaaattttctagtagtcacatttaa--aaagtagaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74927277 160 + 122973662 CAGGAAGGTATGAAATCCTTGAG----AGATGCTGTTT------------------------------------------------CTGCTTTCCTGT--GGTGGCTGCCTAGCCCAGCACTGTCCAGTATGAATGATGAATGTAATCTGAGTCACAaatgtgagccatttacatatttttaaattttctagtagtcacatttaa--aaagtagaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30806868 153 + 172585720 CAGGAAGGTATGAAACCCTTAAG----AGATGCCCTTT------------------------------------------------CTGCTTTCCTAT--GGTGGTTGCCTAGCCcagcactgtccagt-------atgaatgtaatctgagtcacaaatgtgagtcacttatatatttttaaattttctagtagtcacatttaa--aaagtacaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30096348 153 - 170955103 CAGGAAGGTATGAAACCCTTAAG----AGATGCCCTTT------------------------------------------------CTGCTTTCCTAT--GGTGGTTGCCTAGCCcagcactgtccagt-------atgaatgtaatctgagtcacaaatgtgagtcacttatatatttttaaattttctagtagtcacatttaa--aaagtacaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     345203 153 +   1495729 CAGGAAGGTATGAAACCCTTGAG----AGATGCCCTTT------------------------------------------------CTGCTTTCCTGT--GGTGGTTGCCTAGCCcagcactgtccagt-------atgaatgtaatgtgagtcacaaatgtgagtcacttacatatttttaaattttctagtagtcacatttaa--agagtacaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     443122 153 -    863181 CAGGAAGGTATGAAACCCTTGAG----AGATGCCCTTT------------------------------------------------CTGCTTTCCTGT--GGTGGTTGCCTAGCCcagcactgtccagt-------atgaatgtaatctgagtcccaaatgtgagtcacttatatatttttacattttctagtagtcacatttaa--agagtacaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29595287 153 -  71996105 CAAGAAGGTATGAAACCCTTAAG----AGATGCCCTTT------------------------------------------------CTGCTTTCCTGT--GGTGGTTGCCTAGCCcagcactgtccagt-------atgaatgtaatctgagtcacaaatgtgagtcacttatatatttttaaattttctagtagtcacatgtaa--agagtacaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     288120 153 -    735854 CAGGAAGGTATGAAACCCTTGAG----AGATGCCCTTT------------------------------------------------CTGCTTTCCTGT--GGTGGTTGCCTAGCCcagcactgtccagt-------atgaatgtaatctgagtcccaaatgtgagtcacttacatatttttacattttctagtagtcacatttaa--agagtacaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     233603 153 -   1829203 CAGGAAGGTATGAAACCCTTGAG----AGATGCCCTTT------------------------------------------------CTGCTTTTCTGG--GGTGGTTGCCTAGCCcagcactgtccagt-------atgaatgtaatctgagtcacaaatgtgagtcacttacatatttttaaattttctagtagtcacatttaa--aaagtacaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30423347 138 + 171630274 CGGGAAGGCATGAAACCCTGGA-----AGATGCCCTTT------------------------------------------------CTGCTTTCCTGT--GGTGGCTGCCTAGCCcggcactgtccagt-------atgaatgtaatctgactcacaaa-----------tatataaatttaaattttttagtcgt---atttaa--aaagtagaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           238399 151 +    515838 CAGGAAGGCATGAAACCCCTGA-----AGATGCCCTTT------------------------------------------------CTGCTTTCCTGT--GGTGGTTGCCTAGCCTGGCACTGTCCAGC-------ACGAATGTAATCTGAGTCACAaatgtgaggcacttacataattttaaattttttagtagtcacatttaa--aaagtaga-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     867726 152 -   1771730 TAGGAAGGTATGAAACCCTTGA-----AGATGCCTTTT------------------------------------------------CTGCTTTCCTGT--GGTGGCTGCCTAGCCcggcactgtccagt-------atgaatataatctgagtcacaaatgtgaggtgcctacataattttaaatattttagcagtcacatttaa--aaagtagaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     362948 152 -    383796 CAGGCAGGCATGAAACCCTTGA-----AGATGCCCTTT------------------------------------------------CTGCTTTCCTGT--GGTGGCTGCCTAGCCcggcactgtccagt-------atgaatgtaatctgagtcacaaatgtgaggcacttacataattttaaattttttagtagtcacatttaa--aaagtagaa
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               325449 145 + 123392446 CAAGAAGGTATAAAACACTTGAG----AGATTCCCTCT------------------------------------------------CTGCTTCCCTGT--GGTGGCTACC--------cactgtttagt-------acaaatataatctgagccacaaatgtgagccacttaaataactttaaattttctagtagtcacattaaa--aaagtaaaa
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     130417 153 -   1411461 CAAGAAGGTATAAAACACTTGAG----AGATTTCCTTC------------------------------------------------CTGCTTCCCTGT--GGTGGCTAACTAGCCcaacactgtccagt-------gcaactataatctgagccacaaatatgacccatttatataattttaaattttctagtagtcacattaaa--aagataaaa
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           280213 144 +  18854210 aaagaaaGCATAAAACATTTGAG----AGATTCCCCTCCTCCTTTTTTAAGCAACAAGAGTCTCACTCTCGAAGGAGATAAGACTTCTGCTTCCCTGT--GGTGGCTGTCTAGCCC----------------------------------AGCCACAAATGTGACCCACTTACATAATTTT--------------------------------aaa
i otoGar3.GL873550         I 43 C 0
s mm10.chr17               58080136 135 -  94987271 CAAGAAGGCACCGAA-----GAGGAATAGGTGCCCTAG------------------------------------------------GGGC-TCCCCAC--AGTGGCTCTCCAGCTCAGCTCTGTGCAGA-------AC------------AGACACGAACATCAATCACT----GAGTGTTGAATTTTCTAGAGGCCATTTTGGA--AACATAAAA
i mm10.chr17               C 0 I 836
s dasNov3.JH580105            26115 150 -     45298 CAAG-AGGTGTGAAAAGGGAACG----CGCTGCCCTTC------------------------------------------------CCGC---CCTGTGAGGAGGCTGTCCAGC-cagcactgtctagc-------agaaatgtggccggagccacagcggtgagcccct--cattagcttaaattctctagttgtcccactaaaacaaaatagaa
i dasNov3.JH580105         C 0 I 1
e canFam3.chr35            26318437 451 +  26524999 I

a score=773314.000000
s hg38.chr6_GL000254v2_alt  1449615 63 +   4827813 agaaactagt-aaaattaactttaattatatattttatttaactcaatattctcaa---aatgttat
s panTro5.chr6             30318982 63 + 175400573 agaaactagt-aaaattaactttaattatatattttatttaactcaatattctcaa---aatgttat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30553442 63 + 173848474 agaaactagt-aaaattaactttaattatatattttatttaactcaatattctcaa---aatgttat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     260418 63 +   2037526 agaaactagt-aaaattaactttaattatatattttatttaactcaatattctcaa---aatgttat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74927437 66 + 122973662 agaaactagt-aaaattaactttagttatatattttatttaactcaatattctcaaaataatgttat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807021 66 + 172585720 agaaactagt-aaaattaactttaattatatattttatttaactcaatattctcaaaataatgttat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30096501 66 - 170955103 agaaactagt-aaaattaactttaattatatattttatttaactcaatattctcaaaataatgttat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     345356 66 +   1495729 agaaactagt-aaaattaactttaattatatgttttatttaactcaatattctcaaaataatgttat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     443275 66 -    863181 agaaactagt-aaaattaactttaattatatgttttatttaactcaatattctgaaaataatgttat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29595440 66 -  71996105 agaaactaat-aaaattaactttaattatatattttatttaactcaatattctcaaaataatgttat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     288273 66 -    735854 agaaactagt-aaaattaactttaattatatgttttatttaactcaatattctcaaaataatgttat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     233756 66 -   1829203 agaaactagt-aaaaataactttaattatatattttatttaactcaatattctcaaaataatgttat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30423485 62 + 171630274 agcaactagc-aaaattaatt----ttatatattttatttaactcgatagtctcaaaataatgtcat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           238550 59 +    515838 ---aactagt-aaaattaatt----ttatacattttatttaactcgatagtctcaaaataatgtcat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     867878 63 -   1771730 ggaaactagtaaaaattaatt----ttatatatttcatttaactcaatagtctcaaaataatgtcac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     363100 62 -    383796 agaaactagt-aaaattaatt----ttatatattttatttaacttgatagtctcaaaataatgtcat
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               325594 62 + 123392446 agaaactagt-aaagttaatgttagttatata-tttatttacctcaatattttcaa---aatattat
i micMur3.chr6             C 0 I 167
s proCoq1.NW_012149775v1     130570 61 -   1411461 agaaactagt-aaagttaattttagttatata-tttatttaactcaatatttt-aa---aatattat
i proCoq1.NW_012149775v1   C 0 I 3
s otoGar3.GL873550           280357 63 +  18854210 agaaatgagt-aaaattaattttaattatatattttatttaatacaatattttcaa---aatattgt
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            26266 48 -     45298 gggagccggg-gaagttggttttaacgatctgctttatttaacccagta------------------
i dasNov3.JH580105         I 1 C 0
e mm10.chr17               58080271 836 -  94987271 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=334857.000000
s hg38.chr6_GL000254v2_alt  1449678 26 +   4827813 ttcaacatgtattataaaaattattg
s panTro5.chr6             30319045 26 + 175400573 ttcaacatgtattataaaaattattg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30553505 26 + 173848474 ttcaacatgtattataaaaattattg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     260481 26 +   2037526 ttcaacatgtattataaaaattattg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74927503 26 + 122973662 ttcaacatgtattataaaaattattg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807087 26 + 172585720 ttcaacatgtattataaaaattattg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30096567 26 - 170955103 ttcaacatgtattataaaaattattg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     345422 26 +   1495729 ttcaacatgtattataaaaattattg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     443341 26 -    863181 ttcaacatgtattataaaaattattg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29595506 26 -  71996105 ttcaacatgtattataaaaattattg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     288339 26 -    735854 ttcaacatgtattataaaaattattg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     233822 26 -   1829203 ttcaacatgtattataaaaattattg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30423547 26 + 171630274 ttcaacatgtattataaaaattattg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           238609 26 +    515838 ttcaacatgtattataaaaattattg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     867941 26 -   1771730 ttcaacatgtattataaaaattattg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     363162 26 -    383796 ttcaacatatattataaaaattattg
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     130634 24 -   1411461 ttcaacatgaactataagaattat--
i proCoq1.NW_012149775v1   I 3 C 0
s otoGar3.GL873550           280420 26 +  18854210 ttcaacatgaactataagaactactg
i otoGar3.GL873550         C 0 I 648
s dasNov3.JH580105            26314 17 -     45298 ttcgacgtgcacgacag---------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               325656 167 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=781486.000000
s hg38.chr6_GL000254v2_alt  1449704 73 +   4827813 ctatc--ttttacagtctctttttacactcaatcttgtgaaat--taatgattcttcacatatagcatgtttaaatt
s panTro5.chr6             30319071 73 + 175400573 ctatc--ttttacagtctctttttacactcaatcttgtgaaat--taatgattcctcacatatagcatgtttaaatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30553531 73 + 173848474 ctatc--ttttacagtctctttttacactcaatcttgtgaaat--taatgattcttcacatatagcatgtttaaatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     260507 73 +   2037526 ctatc--ttttacagtctctttttacactcaatcttgtgaaat--taatgattcttcacatatagcatgtttaaatt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74927529 73 + 122973662 ctatc--ttttacagtctctttttacactcaatcttgtgaaat--taatgattcttcacatatagcatgtttgaatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807113 73 + 172585720 ctgtc--ttttacagtctctttttacaatcaatcttgtgaaat--taatgattcttcacatatagcatgtttgaatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30096593 73 - 170955103 ctgtc--ttttacagtctctttttacaatcaatcttgtgaaat--taatgattcttcacatatagcatgtttgaatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     345448 73 +   1495729 ctgtc--ttttacagtctctttttacaatcaatcttgtgaaat--taatgattcttcacatatagcatgtttgaatg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     443367 73 -    863181 ctgtc--ttttatagtctctttttacaatcaatcttgtgaaat--taatgattcttcacatatagcatgtttgaatt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29595532 73 -  71996105 ctgtc--ttttacagtctctttttacaatcaatcttgtgaaat--taatgattcttcacatatagcatgtttgaatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     288365 73 -    735854 ctgtc--ttttatagtctctttttacaatcaatcttgtgaaat--taatgattcttcacatatagcatgtttgaatt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     233848 73 -   1829203 ctgtc--ttttacagtctctttttacaatcaatctcgtgaaat--taatgattcttcacatatagcatgtttgaata
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30423573 71 + 171630274 ctata--tttt--agtctgtttttagactcaatcttgtgaaat--taatgattcttcacatatagcacatttgaact
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           238635 71 +    515838 ctata--tttt--agtctctttttagacccaatcttgtgaaat--taatgattcttcacatatagcacatttgaatt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     867967 73 -   1771730 ctatatttttt--tgtctctttttagactcaatcttgtgaaat--taatgattcttcacatatagcatgtttgaatt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     363188 71 -    383796 ctata--tttt--agtctctttttagactcagtcttgtgaaat--taatgattcttcacatatagcatgtttgaatt
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     130658 72 -   1411461 -tata--ttttacattctgttttcatactcaatcttgtgaaat--tgatgattcttcctttacagcacgtttgaatt
i proCoq1.NW_012149775v1   C 0 C 0
s dasNov3.JH580105            26331 75 -     45298 cagcc--gtttgcaccctttcttctcacgaggccgtgtggagtcccagtgcctttttgctcacagcacgtctcattt
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               325656 167 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e canFam3.chr35            26318437 451 +  26524999 I
e otoGar3.GL873550           280446 648 +  18854210 I

a score=133558.000000
s hg38.chr6_GL000254v2_alt  1449777 10 +   4827813 tggactagct
s panTro5.chr6             30319144 10 + 175400573 tggactagct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30553604 10 + 173848474 tggactagct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     260580 10 +   2037526 tggactagct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74927602 10 + 122973662 tggactagct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807186 10 + 172585720 tggactagct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30096666 10 - 170955103 tggactagct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     345521 10 +   1495729 tggactagct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     443440 10 -    863181 tggactagct
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29595605 10 -  71996105 tggaccacct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     288438 10 -    735854 tggactacct
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     233921 10 -   1829203 tggactagcg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30423644 10 + 171630274 tggactagct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           238706 10 +    515838 tggactagct
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868040 10 -   1771730 tggactagct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     363259 10 -    383796 tggactagct
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     130730 10 -   1411461 tggactagct
i proCoq1.NW_012149775v1   C 0 I 47
s otoGar3.GL873550           281094 10 +  18854210 tagagtagcc
i otoGar3.GL873550         I 648 C 0
s dasNov3.JH580105            26406 10 -     45298 gggactggcc
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               325656 167 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=86734.000000
s hg38.chr6_GL000254v2_alt  1449787 7 +   4827813 acatttc
s panTro5.chr6             30319154 7 + 175400573 acatttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30553614 7 + 173848474 acatttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     260590 7 +   2037526 acatttc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74927612 7 + 122973662 acatttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807196 7 + 172585720 acatttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30096676 7 - 170955103 acatttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     345531 7 +   1495729 acatttc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     443450 7 -    863181 acatttc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29595615 7 -  71996105 acatttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     288448 7 -    735854 acatttc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     233931 7 -   1829203 acatttc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30423654 7 + 171630274 acatttc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           238716 7 +    515838 acatttc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868050 7 -   1771730 acctttc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     363269 7 -    383796 acatttc
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           281104 6 +  18854210 -aatttt
i otoGar3.GL873550         C 0 I 1
s dasNov3.JH580105            26416 7 -     45298 acattcc
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               325656 167 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e proCoq1.NW_012149775v1     130740 47 -   1411461 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=132444.000000
s hg38.chr6_GL000254v2_alt  1449794 12 +   4827813 aagtgcctgtca
s panTro5.chr6             30319161 12 + 175400573 aagtgcctgtcg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30553621 12 + 173848474 aagtgcctgtcg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     260597 12 +   2037526 aagtgcctgtca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74927619 12 + 122973662 aagtgcctgtca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807203 12 + 172585720 aagcgcctgttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30096683 12 - 170955103 aagcgcctgttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     345538 12 +   1495729 aagcgcctgttg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     443457 12 -    863181 aagtgcctgtcg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29595622 12 -  71996105 aggtgcctgtgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     288455 12 -    735854 aagtgcctatcg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     233938 12 -   1829203 aagtgcctgtcg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30423661 12 + 171630274 aaatgcccgtcg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           238723 12 +    515838 aaatgcctgtca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868057 12 -   1771730 aaatgcccatcg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     363276 12 -    383796 aaatgcccgttg
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     130787 12 -   1411461 aagtgcctgatg
i proCoq1.NW_012149775v1   I 47 C 0
s otoGar3.GL873550           281111 12 +  18854210 aagtgcctaatg
i otoGar3.GL873550         I 1 C 0
s dasNov3.JH580105            26423 12 -     45298 aagcgcttggca
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               325656 167 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=261871.000000
s hg38.chr6_GL000254v2_alt  1449806 21 +   4827813 gcacatgtggctagcagctac
s panTro5.chr6             30319173 21 + 175400573 gcacatgtggctagcagctac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30553633 18 + 173848474 gcacatgtggct---agctac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     260609 21 +   2037526 gcacatgtggctagcagctac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74927631 21 + 122973662 gcacatgtggctagcagctac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807215 21 + 172585720 gcacctgtggctagcagctac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30096695 21 - 170955103 gcacctgtggctagcagctac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     345550 21 +   1495729 gcacctgtggctagcagctac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     443469 21 -    863181 gcacatgtggctagcagctac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29595634 21 -  71996105 gcacatgtggctagcagctac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     288467 21 -    735854 gcacatgtggctagcagctac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     233950 21 -   1829203 gcacatgtggctagcagctac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30423673 21 + 171630274 gcccttgtggctagcagctac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           238735 21 +    515838 gcccatgtggctagcagctac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868069 21 -   1771730 gcccgggtggctagcagctac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     363288  9 -    383796 gcccgtgtg------------
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               325823 21 + 123392446 gcacatgtggctagtggctac
i micMur3.chr6             I 167 C 0
s proCoq1.NW_012149775v1     130799 21 -   1411461 gcacacgtggctagtggctac
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           281123 21 +  18854210 gtacatgtggccagtggctac
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            26435 21 -     45298 gcctcggatgctagcagctac
i dasNov3.JH580105         C 0 I 244
e mm10.chr17               58080271 836 -  94987271 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=1176598.000000
s hg38.chr6_GL000254v2_alt  1449827  98 +   4827813 taaattg---------------------gacagt---gcagagctagcccctttctcactgcCTGACAAAGGTAGGTGCTCAGGACAAAGAGTGCCTTGAGGCTTCACCCTTTAGCTTC---AGA
s panTro5.chr6             30319194  98 + 175400573 taaattg---------------------gacagt---gcagagctagcccctttctcactgcCTGACAAAGGTAGGTGCTCAGGACAAAGAGTGCCTTGAGGCTTCACCCTTTAGCTTC---AGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30553651  98 + 173848474 taaattg---------------------gacagt---gcagagctagcccctttctcactgcCTGACAAAGGTAGGTGCTCAGGACAAAGAGTGCCTTGAGGCTTCACCCTTTAGCTTC---AGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     260630  98 +   2037526 taaattg---------------------gacagt---gcagagctagcccctttctcactgcCTGACAAAAGTAGGTGCTCAGGACAAAGAGTGCCTTGAGGCTTCACCCTTTAGCTTC---AGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74927652  98 + 122973662 taaattg---------------------gacagt---gcagagctagcccctttctcactgcCTGACAAAGGTAGGTGCTCAGGACAAAGAGTGCCTTGAGGCCTCACCCTTTAGCTTC---AGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807236  98 + 172585720 caaactg---------------------gacagt---gcagAGCTGGCCCCTTTCTCACTGCCTGACAAAGGTAGGTGCTCAGGACAAAGAGAACCTTGAGGCTTCACCCTTCAGCTTC---AGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30096716  98 - 170955103 caaactg---------------------gacagt---gcagAGCTGGCCCCTTTCTCACTGCCTGACAAAGGTAGGTGCTCAGGACAAAGAGAGCCTTGAGGCTTCACCCTTCAGCTTC---AGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     345571  98 +   1495729 caaactg---------------------gacagt---gcagAGCTGGCCCCTTTCTCACTGCCTGACAAAGGTAGGTGCTCAGGACAAAGAGAGCCTTGAGGCTTCACCCTTCAGCTTC---AGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     443490  98 -    863181 caaactg---------------------gacagt---gcagAGCTAGCCCCTTTCTCACTGCCTGACAAAGGTAGGTGCTCAGGACAAAGAGAGCCTTGAGGCTTCACCCTTCAGCTTC---AGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29595655  98 -  71996105 caaattg---------------------gacagt---gcagAGCTAGCCCCTTTCTCACTGTCTGACAAAGGTAGGTGCTCAGGACAAAGAGAGCCTTGAGGCTTCACCCTTCAGCTTC---AGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     288488  98 -    735854 caaattg---------------------gacagt---gcagAGCTAGCCCCTTTCTCACTGCCTGACAAAGGTAGGTGCTCAGGACAAAGAGAACCTTGAGGCTTCACCCTTCAGCTTC---AGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     233971 101 -   1829203 caaattg---------------------gacaATTGGACAGAGCTAGCCCCTTTCTCACTGCCTGACAAAGGTAGGTGCTCAGGACAAAGAAAGCCTTGAGGCTTCACCCTTCAGCTTC---AGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30423694  99 + 171630274 caaattg---------------------gacagt---tcagAGCTAGCCCCTTTCTCACTACATGATGAAGGCAGGTGCTTGGGAC--AGAATGCTCTGAGGCTTCACTCTCTAGCTTCAGAAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           238756 120 +    515838 cAAGCAGTACAGTACTGTCCTGAAGCACGACAGT---TCAGAGCTAGCCCCTTTCTCACTACATGACGAAGGGAGGTGCTAGGGAC--AGAATGCTCTGAGGCTTCCCTCTCTAGCTTCAGAAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868090  99 -   1771730 caaattg---------------------gacagt---tcagAGCTGGCCCCTTTCTCACTACCTGACGAAGGTAGGTGCTCGGGAC--AGAATGCTCTGAGGCTTCACTCTCTAGCTTCAGAAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     363297  92 -    383796 ----------------------------gacagt---TCAGAGCTAGCCCCTTTCTCACTACCTGACGAAGGTAGGTGCTCGGGAC--AGAATGCTCTGAGGCTTCACTCTCTAGCTTCAGAAGA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               325844  98 + 123392446 caaattg---------------------ggcagt---gcagAGCTAGCCCCTTCCTCACTACCTGACAAAGGTGGGTGCTGGGGACAAAAGGTGCTTTGAGGCCTCACTCATTAGCTTT---AGA
i micMur3.chr6             C 0 I 216
s proCoq1.NW_012149775v1     130820  97 -   1411461 caaattg---------------------ggcagt---gcagAGCTAG-CCCTTCCTCACTACCTGACAAAGGTGGGTGCTGAGGACAAAAGGTGCTTTGAGGCCTCTCTCTTTAGCGTC---AGA
i proCoq1.NW_012149775v1   C 0 I 3
s otoGar3.GL873550           281144  78 +  18854210 caaattg---------------------ggcaat---gcagAGCTAGTCCTTTCCTCACTGTCTGACAAAGGTAGGAGCTAAG--------------------CTCTGTCTTTAGCTTC---ACA
i otoGar3.GL873550         C 0 I 3
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26456 244 -     45298 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=2228223.000000
s hg38.chr6_GL000254v2_alt  1449925 208 +   4827813 AGGCCTACTGTAGGGCTAACCA-CCCAGGAG--CCAGGTGGGGTAAG-GGGGGGCCCCACTCTCCTAAAGCCTGGATGGCAGTCCTGCCCTCTTTCCCATGAAAGAGGGCTTGAGAGGGGGAACGAAGACAGAGCTCCTGCAAGGGGAGGCCAAGTGCCTTCATC-TCCCAGTTCACCCCTGCCAG-----------------AAGAGACTCCTTTTGCAGGTAGAGGAT
s panTro5.chr6             30319292 208 + 175400573 AGGCCTCCTGTAGGGCTAACCA-CCCAGGAG--CCAGGTGGGGTAAG-GGGGGGCCCCACTCTCCTAAAGCCTGGATGGCAGTCCTGCCCTCTTTCCCATGAAAGAGGGCTTGAGAGGGGGAACGAAGACAGAGCTCCTGCAAGGGGAGGCCAAGTGCCTTCATC-TCCCAGTTCACCCCTGCCAG-----------------AAGAGACTCCTTTTGCAGGTAGAGGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30553749 208 + 173848474 AGGCCTCCTGTAGGGCTAACCA-CCCAGGAG--CCAGGTGGGGTAAG-GGGGGGCCCCACTCTCCTAAAGCCTGGATGGCAGTCCTGCCCTCTTTCCCATGAAAGAGGGCTTGAGAGGGGGAACGAAGACAGAGCTCCTGCAAGGGGAGGCCGAGTGCCTTCATC-TCCCAGTTCACCCCTGCCAG-----------------AAGAGACCCCTTTTGCAGGTAGAGGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     260728 208 +   2037526 AGGCCTACTGTAGGGCTAACCA-CCCAGGAG--CCAGGTGGGGTAAG-GGGGGGCCCCACTCTCCTAAAGCCTGGATGGCAGTCCTTCCCTCTTTCCCATGAAAGAGGGCTTGAGAGGGGGAACGAAGACAGAGCTCCTGCAAGGGGAGGCCGAGTGCCTTCATC-TCCCAGTTCACCCCTGCCAG-----------------AAGAGACTCCTTTTGCAGGTAGAGGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74927750 207 + 122973662 AGGCCTACTGTGGGGCTAACGA-CCCAGGAG--CCAGGTGGGGTAAG-GGGGGG-CCCACTCTCCTAAAGCCTGGATGGCAGTCCTGCCCTCTTTCCCATGAAAGAGGGCTTGAGAGGGGGAACGAAGACACAGCTCCTGCAAGGGGAGGCCGAGTGCCTTCATC-TCCCAGTCCATCCCTGCCGG-----------------AAGAGACTCTTTTTGCAGGTAGAGGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807334 225 + 172585720 AGGCCTACTGTGGGGCCAA-CC-CCCAGGAG--CCAGGTGGCGTAAGAGGGAGGCCCCACTATCCTAAAGCCTGGATGGCAGTCCTGCCCTCTTCCCTATGAACAAGGGCTTGAGAGGGGGAATGAAGACAGAGCTCCTGCAAAGAGAGGCCGAGTGCCTTCATC-TCCCGGTTCACCCCTGCCGGAAATAGGAGCAGGGCATAAGAGACTCCTTTTGCAGGTAGAGGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30096814 225 - 170955103 AGGCCTACTGTGGGGCCAA-CC-CCCAGGAG--CCAGGTGGCGTAAGAGGGAGGCCCCACTATCCTAAAGCCTGGATGGCAGTCCTGCCCTCTTCCCTATGAACAAGGGCTTGAGAGGGGGAATGAAGACAGAGCTCCTGCAAAGAGAGGCCGAGTGCCTTCATC-TCCCGGTTCACCCCTGCCGGAAATAGGAGCAGGGCATAAGAGACTCCTTTTGCAGGTAGAGGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     345669 225 +   1495729 AGGCCTACTGTGGGGCCAA-CC-CCCAGGAG--CCAGGTGGCGTAAGAGGGAGGCCCCACTATCCTAAAGCCTGGATGGCAGTCCTGCCCTCTTCCCTATGAACAAGGGCTTGAGAGGGGGAATGAAGACAGAGCTCCTGCAAGGGGAGGCCGAGTGCCTTCATC-TCCCGGTTCACCCCTGCCGGAAATAGGAGCAGGGCATAAGAGACTCCTTTTGCAGGTAGAGGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     443588 226 -    863181 AGGCCTACTGTGGGGCTAA-CCACCCAGGAG--CCAGGTGGTGTAAGAGGGAGGCCCCACTATCCTAAAGCCTGGATGGCAGTCCTGCCCTCTTCCCTATGAAAGAGGGCTTGAGAGGGGAAATGAAGACAGAGCTCCTGCAAGGGGAGGCCGAGTGCCTTCATC-TCCTGGTTTACCCTTGCCGGAAATAGGAGCAGGGCATAAGAGACTCCTTTTGCAGGTAGAGGAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29595753 224 -  71996105 AGGCCTACTGTGGGGCTAA-CA-CCCAGGAG--CCAGGTGGCATAAGAGGGAGGCCCCACTATCCT-AAGCCTGGATGGCAGTCCTGCCCTCTTCCCTATGAACGAGGGCTTGAGAGGGGGAATGAAGACAGAGCTCCTGCAAGGGGAGGCCGAGTACCTTCATC-TCCCGGTTCACCCCTGCCGGAAATAGGAGCAGGGCATAAGAGACTCCTTTTGCAGGTAGAGGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     288586 226 -    735854 AGGCCTACTGTGGGGCTAACCA-CCCAGGAG--CCAGCTGATGTAAGAGGGAGGCCCCACTATCCTAAAGCCTGGATGGCAGTCCTGCCCTCTTCCCTATGAACGAGGGCTTGAGAGGGGGAATGAAGACAGAGCTCCTGCAACGGGAGGCCGAGTGCCTTCATC-TCCCGGTTTACCCTTGCCGGAAATAGGAGCAGGGCATAAGAGACTCCTTTTGCAGGTAGAGGAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     234072 226 -   1829203 AGGCCTACCGTGGGGCTAAGCA-CCCAGGAG--CCAGGTGGCGTAAGAGGGAGGCCTCACTATCCTAAAGCCTGGATGGCGGTCCTGCCCTCTCCCCTATGAAAGAGGGCTTGAGAGGAGGAATGAAGACAGAGCTCCTGCAAGGGGAGGCCGAGTGCCTTCATC-TCCCAGTTCACCCCTGCCGGAAATAGGAGCAGCGCATAAGAGACTCCTTTTTCAGGTAGAGGAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30423793 224 + 171630274 AGGCCTACTGTGGGAAAAGCCG-CCCAGGAG--CCAGGTGGGGT--GGGGGGGGCCCCACTCTCCTAAACACTGGATGGCAGTCCTGCCTTCTTCCTCATGAAACAGGGCTTGAGAGGGGGAACCAAGACAGACCTCCTGAAAGGGGAGGCTGAGTGCCCTCATC-TCCCAGTTCACCTCTGCCAGAAATAGGGGCAGAGCATAAGAGACTCCTTTTGCAGGTAGAAGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           238876 226 +    515838 AGGCCTACTGTGGGACTAGCCA-CCCAGAAG--CCAGGTGGGGTAAGAGGGGGACCCCACTCTCCTAAACCCTGGATGACGGTCCTGCCTTCTTCCCCATGAAACAGGGCTTGAGAGGGGGAACGAAGATAGACCTCCTGAAAGGGGAGGCTGAGTGCCCTCATC-TCCCAGTTCACCTCTGCCAGACATAGGGGCAGAGCATAAGAGACTCCTTTTGCAGGTAGAGGAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868189 223 -   1771730 AGGCCTACTGTGGGAAAAGCCG-CCCAGGAT--CCAGGTGGGGTAAAAGGAGCTCCCCACTCTCCTAAACCCTGGATGGCAGTCCTGCCTTCTTCCCCATGAAACAGGGCTTGAGAGGCGGAACCAAGACACACCTCCTGAAAGGGGAGGCTGAGTGCCCTCATC-TCCCAGTTCACCTCTGCCAGAAACAGGGGCAGAGCATAAGAGA---CTTTTGCAGGTAGAGGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     363389 226 -    383796 AGGCCTACTGTGGGAAAAGTCG-CCCAGGAG--CCAGGTGGGGTAAAAGGAGCACCCCACTCTCCTAAACCCTGGATGGCAGTCCTGCCTTCTTCCCCATGAAACAGGGCTTGAGAGGGGGAACCAAGACAGACCTCCTGAAAGGGGAGGCTGAATGCCCTCATC-TCCCAGTTCACCTCTGCCAGAAATAGGGGCAGAGCATAAAAGACTCCTTTTGCAGGTAGAAGAT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     130920 218 -   1411461 AGGGCTGCTGTGGGGCCAGCCA-CCCAGGAGCACAGTGTGTGGTAGG-AAGGGGCCCCACTCCCCTAAAGCCTG---------AGTGGCAACACTGCCCAGAAAGAGGGCTTGAGAGGAGAAA-GGAGACAGAGTTCCTGAAGTGAGAAGCTGAGTGCCCCTCCTCTCCTAGTGCAGCCCTGCTGGAAATAGGGGCAGGGCTCAGAGACCCCTCTGTGCAGGTAGAGGAG
i proCoq1.NW_012149775v1   I 3 C 0
s otoGar3.GL873550           281225 212 +  18854210 AGGCCTGCAGTGGGCCCAGCGA-CACAAGAG--TAAGGTGTGGCAAG-AGGGGGTTGTGCTCCCCTAACGCC-----------ACTGCCTTCTTTCCCCAAAAGGAGGGTTTGAGAAAAGAAA-GGAGATAGAGGTCCTAAAGTG-GCAGCTGAGTGCCTCTTCT-TCCCAGTGCACTCCTGCTGGAAACAGGGGCAGGGCATAGGGACCCCTCGGTATAGGTATAGGAG
i otoGar3.GL873550         I 3 C 0
e micMur3.chr6               325942 216 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26456 244 -     45298 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=1117443.000000
s hg38.chr6_GL000254v2_alt  1450133 79 +   4827813 GAGCCCAGAAGCTGGGGACAATGGCCCATTCCTGGCCTAGATTTCCTGTAGGGGTGCT--------GGACTGAGTGGAGAACTATAG
s panTro5.chr6             30319500 79 + 175400573 GAGCCCAGAAGTTGGGGACAATGGCCCATTCCTGGCCTAGATTTCCTGTAGGGGTGCT--------GGACTGAGTGGAGAACTATAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30553957 79 + 173848474 GAGCCCAGAAGTTGGGGACAATGGCCCATTCCTGGCCTAGATTTCCTGTAGGGGTGCT--------GGACTGAGTGGAGAACTATAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     260936 79 +   2037526 GAGCCCAGAAGTTGGGGACAATGGCCCATTCCTGGCCTAGATTTCCTGTAGGGGTGCT--------GGACTGAGTGGAGAACTGTAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74927957 79 + 122973662 GAGCCCAGAAGTTGGGGACAATGGCCCATTCCTGGCCTAGATTTCCTGTAGGGGTGCT--------GGACTGAGTGAAGAGCTATAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807559 79 + 172585720 GAGCCCAGAAGTTGGGGACAATGGCCCATTCCTGGCCTAGATTTCCTGTAAGGATGTT--------GGACTGAGTGAAGAGCTGTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30097039 79 - 170955103 GAGCCCAGAAGTTGGGGACAATGGCCCATTCCTGGCCTAGATTTCCTGTAGGGATGTT--------GGACTGAGTGAAGAGCTGTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     345894 79 +   1495729 GAGCCCAGAAGTTGGGGACAATGGCCCATTCCTGGCCTAGATTTCCTGTAGGGATGTT--------GGACTGAGTGAAGAGCTGTAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     443814 79 -    863181 GAGCCCAGAAGTTGGGGACAATGGCCCATTCGTGGCCTAGATTTCCTGTAGGGATGTT--------GGACTGAGTGAAGAGCTGTAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29595977 79 -  71996105 GAGCCCAGAAGTTGGGGACAATGGCCCATTCCTGGCCTAGATTTCCTGTAGGGATGTT--------GGACTGAGTGAAGAGCTATAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     288812 79 -    735854 GAGCCCAGAAGTTGGGGACAATGGCCCATTCGTGGCCTAGATTTCCTGTAAGGATGTT--------GGACTGAGTGAAGAGCTGTAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     234298 79 -   1829203 GAACCCAGAAGTTGGGGACAATGGCCCATTCCTGGCCTAGATTTCCTGTAAGGATGTT--------GGACTGAGTGAAGAGCTGTAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424017 79 + 171630274 GAGCCCAGAAGTTGGAGACAATGGCCCATTCCTGGCCTAGATTTCCTGTAGGGGTGCT--------GGACTGAGTGAAGTGCTGTAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239102 79 +    515838 GAGTCCAGAAGTTGGGGACAACGGCCCATTCCTGGCCTAGATTTCCCGTAGGGGTGCT--------GGACTGAGTGAAGTGCTGTAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868412 79 -   1771730 GAGCCCAGAAGTTGGGGACAATGGCCCATTCCTGGCCTAGATTTCCCATAGGGGTGCT--------GGACTGAGTGAAGTGCTGTAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     363615 79 -    383796 GAGCCCAGAAGTTGGAGACAACGGCCCATTCCTGGCCTAGATTTCCTGTAGGGGTGCT--------GGACTGAATGAAGTGCTGTAG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               326158 79 + 123392446 GAGCCCAGAAGCTGGGAACAATAGCCCCTTCCTGGCCTGGATTTCCTGTAGGGGTGCT--------GGACTGAGCGAAGAGCTGCAG
i micMur3.chr6             I 216 C 0
s proCoq1.NW_012149775v1     131138 79 -   1411461 AAGCCTAGAAGCTGGGAACAATGGCGCCTTCCTGGCCTGGATTTCCTGTAGGAGTGCT--------GGACTGAGTGAAGAGCTGCAG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           281437 87 +  18854210 GAGCCCAGAAGCTGGGAATAATAGCCCATTCCTGGCCTGTTTTTCCTATAGGGGTGCTGGACTGAAGGACTGAGTGAAGAGATGCAG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26456 244 -     45298 I
e canFam3.chr35            26318437 451 +  26524999 I

a score=130563.000000
s hg38.chr6_GL000254v2_alt  1450212 10 +   4827813 GGTGGAGCCC
s panTro5.chr6             30319579 10 + 175400573 GGTGGAGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554036 10 + 173848474 GGTGGAGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261015 10 +   2037526 GGTGGAGCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928036 10 + 122973662 GGTGGAGCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807638 10 + 172585720 GGTGGAGCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30097118 10 - 170955103 GGTAGAACCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     345973 10 +   1495729 GGTAGAACCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     443893 10 -    863181 GGTGGAGCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596056 10 -  71996105 GGTGGAGCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     288891 10 -    735854 GACGGAGCTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     234377 10 -   1829203 GGTGGAGCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424096 10 + 171630274 GGTGGAGCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239181 10 +    515838 GGCAGAGCCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868491 10 -   1771730 GGCGGAGCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     363694 10 -    383796 GGTGAAGCCC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               326237 10 + 123392446 GGTGTAGCCC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     131217 10 -   1411461 GCTGGAGCCC
i proCoq1.NW_012149775v1   C 0 I 33
s otoGar3.GL873550           281524 10 +  18854210 TGAAGAGCCC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26318888 10 +  26524999 GGTGAGGCCC
i canFam3.chr35            I 451 C 0
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26456 244 -     45298 I

a score=66218.000000
s hg38.chr6_GL000254v2_alt  1450222 5 +   4827813 CTAGA
s panTro5.chr6             30319589 5 + 175400573 CTAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554046 5 + 173848474 CTAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261025 5 +   2037526 CTAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928046 5 + 122973662 CGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807648 5 + 172585720 CTAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30097128 5 - 170955103 CTAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     345983 5 +   1495729 CTAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     443903 5 -    863181 CTAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596066 5 -  71996105 CTAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     288901 5 -    735854 CTAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     234387 5 -   1829203 CTAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424106 5 + 171630274 CTAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239191 5 +    515838 CTAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868501 5 -   1771730 CTAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     363704 5 -    383796 CTAGA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               326247 5 + 123392446 ATAGA
i micMur3.chr6             C 0 I 94
s otoGar3.GL873550           281534 5 +  18854210 ATAGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26318898 5 +  26524999 CTCGA
i canFam3.chr35            C 0 C 0
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26456 244 -     45298 I
e proCoq1.NW_012149775v1     131227 33 -   1411461 I

a score=164016.000000
s hg38.chr6_GL000254v2_alt  1450227 16 +   4827813 TGGGGAGCTACTTCTG
s panTro5.chr6             30319594 16 + 175400573 TGGGGAGCTACTTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554051 16 + 173848474 TGGGGAGCTACTTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261030 16 +   2037526 TGGGGAGCTACTTCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928051 16 + 122973662 TGGGGAGCTACTTCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807653 16 + 172585720 TGGGGAGCTGCGTCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30097133 16 - 170955103 TGGGGAGCTGCGTCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     345988 16 +   1495729 TGGGGAGCTGTATCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     443908 16 -    863181 TGGGGAGCTGCGTCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596071 16 -  71996105 TGGGGAGCTACGTCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     288906 16 -    735854 TGGGAAGCTGCGTCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     234392 16 -   1829203 TGGGGAGCTGCATCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424111 16 + 171630274 TGGGGAGCTACTTCGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239196 16 +    515838 TGGGGAGCTACTTCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868506 16 -   1771730 TGGGGAGCTACTTCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     363709 16 -    383796 TGGGGAGCTACTTCTG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           281539  5 +  18854210 TGGG-----------G
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26318903 16 +  26524999 TGGAGGGCCTCCTCTG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               326252 94 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26456 244 -     45298 I
e proCoq1.NW_012149775v1     131227 33 -   1411461 I

a score=488833.000000
s hg38.chr6_GL000254v2_alt  1450243 52 +   4827813 G-CCCCAGCACCCTTCCCCCAGTGTCTTGCAGCCCCAAGACAGCACAAGACAG
s panTro5.chr6             30319610 52 + 175400573 G-CCCCAGCACCCTTCCCCCAGTGTCCTGCAGCCCCAAGACAGCACAAGACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554067 52 + 173848474 G-CCCCAGCACCCTTCCCCCAGTGTCCTGCAGCCCCAAGACAGCACAAGACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261046 52 +   2037526 G-CCCCAGCACCCTTCCCCCAGTGTCCTGCAGCCCCAAGACAGCACAAGACAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928067 52 + 122973662 G-TCCCAGCACCCTTCTGCCAGTGTCCTGCTGCCCCAAGACAGCACAAGACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807669 51 + 172585720 G--CCCAGCACCCTTCCCCCAGTGTCCTGCAGCCCCAAGACAGCACAAGACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30097149 51 - 170955103 G--CCCAGCACCCTTCCCCCAGTGTCCTGCAGCCCCAAGACAGCACAAGACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346004 51 +   1495729 G--CCCAGCACCCTTCCCCCAGTGTCCTGCAGCCCCAAGACAGCACAAGACAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     443924 51 -    863181 G--CCCAGCACCCTTCCCCCAGTGTCCTGCAGCCCCAAGACAGCACAAGACAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596087 51 -  71996105 G--CCCAGCATCCTTCCCCCAGTGTCCTGCAGCCCCAAGACAGCACAAGACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     288922 51 -    735854 G--CCCAGCACCCTTCCCCCAGTGTCCTGCAGCCCCAAGACAGCACAAGACAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     234408 49 -   1829203 G--CCCAGCACGCTTCCCC--GTGTCCTGCAGCCCCAAGACTGCACAAGACAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424127 52 + 171630274 G-CCCCAGCACCCGTCCTCCAGTGTCCTGCAGCCCCAAGAGGGCACAGGACAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239212 38 +    515838 G-CCCCAGCACCCTACCTCCAGTGTCCTGCAGCCCCA--------------AG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868522 52 -   1771730 G-CCCCAGCACCCTTCCTCCAGTGTCCTGCAGCCCCAAGAGGGCACAGGACAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     363725 52 -    383796 G-CCCCAGCACCCTTCCTCCAGTGTCCGGCAGCCCCAAGAGGGCACAGGACAG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           281544 19 +  18854210 G-TTCCAG---------------------------------AGCACAGAGCAG
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26318919 50 +  26524999 GGCCCCTGCACTCTTCT---AGCACCCTGCTGCTCCAGGAGAGCCCAGGACAG
i canFam3.chr35            C 0 I 1
s dasNov3.JH580105            26700 51 -     45298 -gcccctgc-tcctctctgtactgccctgTGCCCCCGCTCCTCTACTGCACTG
i dasNov3.JH580105         I 244 C 0
e micMur3.chr6               326252 94 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e proCoq1.NW_012149775v1     131227 33 -   1411461 I

a score=912436.000000
s hg38.chr6_GL000254v2_alt  1450295 67 +   4827813 -CCTGGGGCTAGGTAGTGGGACAAGCGTGGGCAGCTT----CCCTGA-GAGCCACCAGCCCAGTCATGGGGAC
s panTro5.chr6             30319662 67 + 175400573 -CCTGGGGCTAGGTAGTGGGACAAGCGTGGGCAGCTT----CCCTGA-GAGCCACCAGCCCAGTCATGGGGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554119 67 + 173848474 -CCTGGGGCTAGGTAGTGGGACAAGCGTGGGCAGCTT----CCCTGA-GAGCCACCAGCCCAGTCATGGGGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261098 67 +   2037526 -CCTGGGGCTAGTTAGTGGGACAAGCGTGGGCAGCTT----CCCTGA-GAGCCACCAGCCCAGTCATGGGGAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928119 67 + 122973662 -CCTGGGGCTAGGTAGTGGGACAAGCGTGGGCAGCTT----CCCTGA-GAGCCACCAGCCCAGTCATGGGGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807720 67 + 172585720 -CCTGGGGCTAGGTAGTGGGACAAGCATGGGCAGCTT----CCCTGA-GAGCCACCAGCCCAGTCATGGGGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30097200 67 - 170955103 -CCTGGGGCTAGGTAGTGGGACAAGCATGGGCAGCTT----CCCTGA-GAGCCACCAGCCCAGTCATGGGGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346055 67 +   1495729 -CCTGGGGCTAGGTAGTGGGACAAGCATGGGCAGCTT----CCCTGA-GAGCCACCAGCCCAGTCATGGGGAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     443975 67 -    863181 -CCTGGGGCTAGGTAGCGGGACAAGCATGGGCAGCTT----CCCTGA-GAGCCACCAGCCCAGTCATGGGGAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596138 67 -  71996105 -CCTGGGGCTAGGTAGTGGGACAAGCATGGGCAGCTT----CCCTGA-GAGCCACCAGCCCAGTCATGGGGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     288973 67 -    735854 -CCTGGGGCTAGGTAGTGGGACAAGCATGGGCAGCTT----CCCTGA-GAGCCACCAGCCCAGTCATGGGGAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     234457 72 -   1829203 -CCTGGGGCTAGGTAGTAGGACAAGCATGGGCAGCTTGTCCCACTGACTGGCCACCAGCCCAGTCATGGGAAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424179 67 + 171630274 -CCTGGGGCTAGGTAGTGGAATAAGCATGGGCAGCTT----CCCTGA-GAGCCACCAGCCCAGTCATGAGGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239250 67 +    515838 -CCTGGGGCTAGGTAGTGGAATAAGCATGGGCAGCTT----CCCTGA-GAGCCACCAGCCCAGTCATGAGGAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868574 67 -   1771730 -CCTGGGGCTAGGTAGTGGAATAAGCATGGGCAGCTT----CCCTGA-GAGCCATCAGCCCAGTCATGAGGAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     363777 67 -    383796 -CCTGGGGCTAGGTAGTGGAATAAGCATGGACAGCTT----CCCTGA-GAGCCACCAGCCTAGTCATGAGGAC
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     131260 67 -   1411461 -CCTGGGAGTAGGTAGAGGGAGAGGCGTGGGCAGCTC----CCCTGA-CAGTCACCAGCGCAGCCATGTAGAA
i proCoq1.NW_012149775v1   I 33 C 0
s otoGar3.GL873550           281564 67 +  18854210 -CCTGGGAGTAGGTAAAGAGAAAAGCCTGGGCAACTC----CCCTGA-CAGCTACCAGGGCTGCCATGTAGAA
i otoGar3.GL873550         I 1 C 0
s canFam3.chr35            26318970 66 +  26524999 -CCTGGGGAGATGTGGACGGAGAAGCGCAGGCAGGTC----GCCTG--CAGCCACCAGCCCTGCCTTGGCAGC
i canFam3.chr35            I 1 C 0
s dasNov3.JH580105            26751 67 -     45298 CCAGGGAGCTTGGAGGAGGGAGAAGCGAGGGCAGCT-----CCCCAA-GAGTGACCGGCTCAGTTTTGGGGTG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               326252 94 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I

a score=199721.000000
s hg38.chr6_GL000254v2_alt  1450362 14 +   4827813 -TGCTCAGGGGAGAC
s panTro5.chr6             30319729 14 + 175400573 -TGCTCAGGGGAGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554186 14 + 173848474 -TGCTCAGGGGAGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261165 14 +   2037526 -TGCTCAGGGGAGAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928186 14 + 122973662 -TGCTCAGGGGAGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807787 14 + 172585720 -TGCTCAGGGGAGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30097267 14 - 170955103 -TGCTCAGGGGAGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346122 14 +   1495729 -TGCTCAGGGGAGAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     444042 14 -    863181 -TGCTCAGGGGAGAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596205 14 -  71996105 -TGCTCAGGGGAGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289040 14 -    735854 -TGCTCAGGGGAGAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     234529 14 -   1829203 -TGCTCAGGGGAGAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424246 14 + 171630274 -TGCTTGGGGCAGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239317 14 +    515838 -TGCTCGGGGCAGAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868641 14 -   1771730 -TGCTTGGGCTAGAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     363844 14 -    383796 -TGCTCGGGGCAGAC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               326346 14 + 123392446 -TGCTCAGGGGAGAC
i micMur3.chr6             I 94 C 0
s proCoq1.NW_012149775v1     131327 14 -   1411461 -TGCTCAGGGGAGAC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           281631 14 +  18854210 -TGCTCAGGGGAGAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26319036  2 +  26524999 -------------AC
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            26818 15 -     45298 TGGCCCAGATGGGAC
i dasNov3.JH580105         C 0 I 2271
e mm10.chr17               58080271 836 -  94987271 I

a score=551385.000000
s hg38.chr6_GL000254v2_alt  1450376 38 +   4827813 GCGGGGGCCCTCTTAGGAGGGGTCTGCAAACCTAGAGC------
s panTro5.chr6             30319743 38 + 175400573 GCGGGGGCCCTCTTAGGAGGGGTCTGCAAACCTAGAGC------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554200 38 + 173848474 GCGGGGGCCCTCTTAGGAGGGGTCTGCAAACCTAGAGC------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261179 38 +   2037526 GCGGGGGCCCTCTTAGGAGGGGTCTGCAAACCTAGAGC------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928200 38 + 122973662 TCGGGGGCCCTCTTAGGAGGGGTCTGCAAACCTAGAGC------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807801 38 + 172585720 TCGGGGGCCCTCTTAGGAGGGGTCTGCAAACCTAGAGC------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30097281 38 - 170955103 TCTGGGGCCCTCTTAGGAGGGGTCTGCAAACCTAGAGC------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346136 38 +   1495729 TCTGGGGCCCTCTTAGGAGGGGTCTGCAAACCTAGAGC------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     444056 38 -    863181 TCGGGGGCCCTCTTAGGAGGGGTCTGCAAACCTAGAGC------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596219 38 -  71996105 TCGGGGGCCCTCTTAGGAGGGGTTTGCAAACCTAGAGC------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289054 38 -    735854 TCGGGGGCCCTCTTAGGAGGGGTCTGCAAACCTAGAGC------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     234543 38 -   1829203 TCTGGGGCCCTCTTAGGAGGGGTCTGCAAACCTAGAGC------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424260 38 + 171630274 TCGGTGGCCCTCTTAGGAGGGGTCTGCAAATCTAGAGC------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239331 38 +    515838 TCGGTGGCCCTCTTAGGAGGGATCTGCAAATCTAGAGC------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868655 38 -   1771730 TCGGTGGCCCTCTTAGGAGGCATCTGCAAATCTAGAGC------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     363858 38 -    383796 TCGGTGGCCCTCTTAGGAGGGGTCTGCAAATATAGAGC------
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               326360 38 + 123392446 TCAGTGAGCCCCTTAGGAGGGATCTGCAAACCTAGAGC------
i micMur3.chr6             C 0 I 6
s proCoq1.NW_012149775v1     131341 38 -   1411461 TCAGTGACCCTCTTAGGAGGGATCTGCAAACCTAGAGC------
i proCoq1.NW_012149775v1   C 0 I 137
s otoGar3.GL873550           281645 38 +  18854210 TCAGTGACCCTCTTAGGAAGGATCTGCAAACCTGGGGC------
i otoGar3.GL873550         C 0 I 6
s canFam3.chr35            26319038 44 +  26524999 TCAGGAACCCTCCTCTGAGGGGTTCATACATCTGGTGCCTGAAC
i canFam3.chr35            C 0 C 0
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I

a score=342590.000000
s hg38.chr6_GL000254v2_alt  1450414 26 +   4827813 ATAGGAAACACTGCCTGGGAGCACTT
s panTro5.chr6             30319781 26 + 175400573 ATAGGAAACACTGCCTGGGAGCACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554238 26 + 173848474 ATAGGAAACACTGCCTGGGAGCACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261217 26 +   2037526 ATAGGAAACACTGCCTGGGAGCACTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928238 26 + 122973662 ATAGGAAACACTGCCTGGGAGCACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807839 26 + 172585720 ACAGGAAACACTGCCTGGGAGCACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30097319 26 - 170955103 ACAGGAAACACTGCCTGGGATCACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346174 26 +   1495729 ACAGGAAACACTGCCTGGGATCACTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     444094 26 -    863181 ACAGGAAACACTGCCTGGGAGCACTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596257 26 -  71996105 ACAGGAAACACTGCCTGGGAGCACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289092 26 -    735854 ACAGGAAACACTGCCTGGGAGCACTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     234581 26 -   1829203 ACAGGAAACACTGCCTGGGAGCACTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424298 26 + 171630274 AGAGGAAACATTGCCAGGGAGCACTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239369 26 +    515838 AGAGGAAACGTTGCCGGGGAGCACTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868693 26 -   1771730 AGAGGAAACATTGCCAGGGAGCACTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     363896 26 -    383796 AGAGGAAACATTGCCGGGGAGCACTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               326404 26 + 123392446 AGAGGAAATACTGCCTGGGAGCACTT
i micMur3.chr6             I 6 I 102
s otoGar3.GL873550           281689 26 +  18854210 AGAGGAAATACAGCCTGAGAACACTT
i otoGar3.GL873550         I 6 C 0
s canFam3.chr35            26319082 26 +  26524999 GCAGGAATCATGGCTGGGGAGTACTT
i canFam3.chr35            C 0 C 0
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I
e proCoq1.NW_012149775v1     131379 137 -   1411461 I

a score=1005283.000000
s hg38.chr6_GL000254v2_alt  1450440 101 +   4827813 CACCTACAAGGGCCTTTAGCGGCTTCAGGGCCCAGCCACACCCTTCTCCACGTACATGTTCCAGACCCAGTCA--CCC-CGAGCAGGGAGAACCAACCCTCATA
s panTro5.chr6             30319807 101 + 175400573 CACCTACAAGGGCCTTTAGCGGCTTCAGGGCCCAGCCACACCCTTCTCCATGTACGTGTTCCAGACCCAGTCA--CCC-CGAGCAGGGAGAACCAACCCTCATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554264 101 + 173848474 CACCTACAAGGGCCTTTAGCGGCTTCAGGGCCCAGCCACACCCTTCTCCATGTACGTGTTCCAGACCCAGTCA--CCC-CGAGCAGGGAGAACCAACCCTCATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261243 100 +   2037526 CACCTACAAGGGCCTTTAGCGGCTTCAGGGCCCAGTCACACCCTTCTCCATGTAGGTGTTCCAGACCCAGTCA--CCC-CGAGCA-GGAGAACCAACCCTCATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928264 101 + 122973662 CACCTACAAGGGCCTTTAGCCGCTTCGGGGCCCAGCCACACCCTTTTCCATGTACGCGTTCCAGACCCAGTCA--CCC-CGAGCAGGGAAAACCAACCCTCATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807865 101 + 172585720 CACCTACAAAGGCCTTTAGCCGCTTCAGGGCCCAGCCACACCCTTCTCCATGTATGCGTTCCAGACCCAGTCA--CCC-CGAGCAGGGAGAACCAACCCTCACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30097345 101 - 170955103 CACCTACAAAGGCCATTAGCCGCTTCAGGGCCCAGCCACACCCTTCTCCATGTATGTGTTCCAGACCCAGTCA--CCC-CGAGCAGGGAGAACCAACCCTCACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346200 101 +   1495729 CACCTACAAAGGCCGTTAGCCGCTTCAGGGCCCAGCCACACCCTTCTCCATGTATGCGTTCCAGACCCAGTCA--CCC-CGAGCAGGGAGAACCAACCCTCACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     444120 101 -    863181 CACCTACAAAGGCCTTTAGCCACTTCAGGGCCCAGCCACACCCTTCTCCATGTATGGGTTCCAGACCCAGTCA--CCC-CGAGCAGGGAGAACCAACCCTCACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596283 101 -  71996105 CACCTACAAAGGCCTTTAGCCGCTTCAGGGCCCAGCCACACCCTTCTCCATGTATGGGTTCCAGACCCAGTCA--CCC-CGAGCAGGGAGAACCAACCCTCATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289118 101 -    735854 CACCTACAAAGGCCTTTAGCCGCTTCAGGGCCCAGCCACACCCTTCTCCATGTATGCGTTCCAGACCCAGTCA--CCC-CGAGCAGGGAGAACCAACCCTCGTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     234607 101 -   1829203 TACCTACAAAGGCCTTTAGTCGATTCAGGGCCCAGCCACACCCTTCTCCATGTATGGGTTCCAGACCCAGTCA--CCT-CGAGCAGGGAGAACCAACCCTCATA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424324 101 + 171630274 CACCTACAAGGCCCTTTGGACACTTCAGGGCCCAGCCACGCCCATCTCCATCTATGGGATCCAGACTCAGTCA--CCT-CCAGCAGGAAGAACCAACCCTCATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239395 101 +    515838 CACCTACAAGGCCCTTTGGACACTTCAGGGCCCAGCCACGCCCATCTCCATCTATGGGCTCCAGACTCAGTCA--CCT-CAAGCAGGAAGAAGCAACCCTCATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868719 101 -   1771730 CACATACAAAGCCCTTTGGACACTTTGGGGACCAGCCACGCCCATCTCCATCTATGGGCTCCAGACTCAGTCA--CCT-TGAGCAGGAAGAACCAACGCTCATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     363922 101 -    383796 CACCTACAAGGCCATTTGGACACTTCAGGGCCCAGCCACACCCATCTCCATCTATGGGATCCAGACTCAGTCA--CCT-CCAGCAGGAAGAACCAACCCTCATA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           281715  92 +  18854210 -TGCTACAAGGCTCTTCAGGCATTTCAGGGTCCAATTCCATCCCTA---------GGTTTCCAGACCCAGTCATTCCC-CCAACAGGAAGCAATGACTTTCAA-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26319108  93 +  26524999 TTCCTATGGGGTTCAGTTACCTCCCCA----CCAGCTAC-----CCTCCACTTTTACTCCCCCCCACCTGCAA--CCCTCCACCAGGCAGCAGCAACCCTCAGA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               326430 102 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I
e proCoq1.NW_012149775v1     131379 137 -   1411461 I

a score=47762.000000
s hg38.chr6_GL000254v2_alt  1450541 4 +   4827813 -ATAA
s panTro5.chr6             30319908 4 + 175400573 -ATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554365 4 + 173848474 -ATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261343 4 +   2037526 -ATAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928365 4 + 122973662 -ATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807966 4 + 172585720 -ATAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30097446 4 - 170955103 -ATAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346301 4 +   1495729 -ATAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     444221 4 -    863181 -ATAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596384 4 -  71996105 -ATAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289219 4 -    735854 -ATAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     234708 4 -   1829203 -ATAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424425 4 + 171630274 -ATAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239496 4 +    515838 -ATAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868820 4 -   1771730 -ATAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     364023 4 -    383796 -ATAA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               326532 4 + 123392446 -ATAG
i micMur3.chr6             I 102 C 0
s otoGar3.GL873550           281807 4 +  18854210 -GTAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26319201 5 +  26524999 CTTGG
i canFam3.chr35            C 0 C 0
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I
e proCoq1.NW_012149775v1     131379 137 -   1411461 I

a score=377918.000000
s hg38.chr6_GL000254v2_alt  1450545 23 +   4827813 GAACTGTGGAGATTGGACCTGTG
s panTro5.chr6             30319912 23 + 175400573 GAACTGTGGAGATTGGACCTGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554369 23 + 173848474 GAACTGTGGAGATTGGACCTGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261347 23 +   2037526 GAACTGTGGAGATTGGACCTGTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928369 23 + 122973662 GAACTGTGGAGATTGGACCTGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807970 23 + 172585720 GAACTGTGGAGATTGGACCTGTG
i rheMac8.chr4             C 0 I 6
s macFas5.chr4             30097450 23 - 170955103 GAACTGTGGAGATTGGACCTGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346305 23 +   1495729 GAACTGTGGAGATTGGACCTGTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     444225 23 -    863181 GAACTGTGGAGATTGGACCTGTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596388 23 -  71996105 GAACTGTGGAGATTGGACCTGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289223 23 -    735854 GAACTGTGGAGATTGGACCTGTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     234712 23 -   1829203 GAACTGTGGAGACTGGACCTGTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424429 23 + 171630274 GAATTGTGGAGACTGGACCTGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239500 23 +    515838 GAACCGTGGAGATCAGACCTGTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868824 23 -   1771730 GAACTGTGGAGATCGGACCTGTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     364027 23 -    383796 GAACTGTGGAGATTGGACCTGTG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               326536 23 + 123392446 GAACTGTGGAGACTGGACCAGTG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     131516 23 -   1411461 GAACTGTGGAGATTGGACCAGTG
i proCoq1.NW_012149775v1   I 137 C 0
s otoGar3.GL873550           281811 23 +  18854210 GAACTATGGAGATTGGGCCAGTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26319206 23 +  26524999 GAACTGGGGAGATTGGACCAGTG
i canFam3.chr35            C 0 C 0
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I

a score=17068.000000
s hg38.chr6_GL000254v2_alt  1450568 13 +   4827813 GTATAAGTAGACT
s panTro5.chr6             30319935 13 + 175400573 GTATAAGTAGACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554392 13 + 173848474 GTATAAGTAGACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261370 13 +   2037526 GTATAAGTAGACT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928392 13 + 122973662 GTATAAGTAGACT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30097473  6 - 170955103 -----TGTGGA--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346328  6 +   1495729 -----TGTGGA--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     444248  6 -    863181 -----TGTGGA--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596411  6 -  71996105 -----TGTGGA--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289246  6 -    735854 -----TGTGGA--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     234735  6 -   1829203 -----TGTGGA--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424452 10 + 171630274 GTGTGCTGGG---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239523 13 +    515838 GTGTACACAGATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868847 13 -   1771730 GTGTACACAGATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     364050 13 -    383796 GTGTACATAGATT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               326559 13 + 123392446 GTGTGAGTAGACT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     131539 13 -   1411461 GTGTGAGTACAAT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           281834 13 +  18854210 GTGTAAGTAGATT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26319229 13 +  26524999 GCATAGATAGACC
i canFam3.chr35            C 0 C 0
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I
e rheMac8.chr4             30807993  6 + 172585720 I

a score=36504.000000
s hg38.chr6_GL000254v2_alt  1450581 3 +   4827813 -CCC
s panTro5.chr6             30319948 3 + 175400573 -CCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554405 3 + 173848474 -CCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261383 3 +   2037526 -CCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928405 3 + 122973662 -CCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30807999 3 + 172585720 -CCC
i rheMac8.chr4             I 6 C 0
s macFas5.chr4             30097479 3 - 170955103 -CCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346334 3 +   1495729 -CCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     444254 3 -    863181 -CCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596417 3 -  71996105 -CCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289252 3 -    735854 -CCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     234741 3 -   1829203 -CCC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           239536 3 +    515838 -CCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868860 3 -   1771730 -CCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     364063 3 -    383796 -CCC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               326572 3 + 123392446 -CCC
i micMur3.chr6             C 0 I 305
s proCoq1.NW_012149775v1     131552 3 -   1411461 -CCC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           281847 3 +  18854210 -CCC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26319242 3 +  26524999 ATT-
i canFam3.chr35            C 0 C 0
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I
e calJac3.chr4             30424462 0 + 171630274 C

a score=360856.000000
s hg38.chr6_GL000254v2_alt  1450584 39 +   4827813 TACCACCTCCTGTA-TTTCCTAGGCTTTAATAGGGCCAGG
s panTro5.chr6             30319951 39 + 175400573 TACCACCTCCTGTA-TTTCCTAGGCTTTAATAGGGCCAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554408 39 + 173848474 TACCACCTCCTGTA-TTTCCTAGGCTTTAATAGGGCCAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261386 39 +   2037526 TACCACCTCCTGTA-TTTCCTAGGCTTTAATAGGGCCAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928408 39 + 122973662 TACCACCTCCTGTA-TTTCCTGGGCTTTAATAGGGCCAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30808002 39 + 172585720 CAGAACCTCCTGTA-TTTCCTGGGCTTTAATGGGGTCAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30097482 39 - 170955103 CAGCACCTCCTGTA-TTTCCTGGGCTTTAATGGGGTCAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346337 39 +   1495729 CAGCACCTCCTGTA-TTTCCTGGGCTTTAATGGGGTCAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     444257 39 -    863181 CAGCACCTCCTGTA-TTTCCTGGGCTTTAACGGGGTCAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596420 39 -  71996105 CAGCACCTCCTGTA-TTTCCTGGGCTTTAATGGGGTCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289255 39 -    735854 CAGCACCTCCTGTA-TTTCCTGGGCTTTAATGGGGTCAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     234744 39 -   1829203 CAGCACCTCCTGTA-TTTCCTGGGCTTTAATGGGGTCAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424462 33 + 171630274 ------CTCTTGTA-TTTCCTGGGCTTTAATAGGGCCAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239539 40 +    515838 TACCACCTTCTGTATTTTCCTGGGCTTTAATAGGGCCAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868863 35 -   1771730 TACCACCTCCTGTA-----TTGGGCTTGAATAGGGCCAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     364066 39 -    383796 TACCACCTCCTGTA-TTTCCTGGGCTTTAATAGGGCCAGG
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     131555 37 -   1411461 CACCACC--CCCCA-TTTCCTGGGCTTTCATAGGGCCAGG
i proCoq1.NW_012149775v1   C 0 I 153
s otoGar3.GL873550           281850 26 +  18854210 CACCTTCCACTCCA-TTATCTGGATCC-------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26319245 16 +  26524999 TGGGACCCTATGCA-TC-----------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               326575 305 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I

a score=1770100.000000
s hg38.chr6_GL000254v2_alt  1450623 210 +   4827813 TGGCCATTGTGCCTTCTTCTTTGGGGTaaaaataaaataaaaataag---ag--aaa---aaaaaaagaaggaaataGGGCCAGGTGGGAGTTGGGGGACtgtgtgtg---------------tgtgagtttgtgtatgtgAAAGAGGGAAA----GAAAAG-----------GGGGATACAGAGTAGAGCACACCAGT--CTCCCCAACT-CCAAACCTGATGAAGTGGAAAGGGCT--GGGCTCCTTTATT
s panTro5.chr6             30319990 213 + 175400573 TGGCCATTGTGCCTTCTTCTTTGGGGtaaaaataaaataaaaataag---ag--agagagaaaaaaagaaggaaaTAGGGCCAGGTGGTAGTTGGGGGACtgtgtgtg---------------tgtgagtttgtgtatgtgAAAGAGGGAAA----GAAAAG-----------GGGGATACAGAGTAGAGCACACCAGT--CTCCCCAACT-CCAAACCTGATGAAGTGGAAAGGGCT--GGGCTCCTTTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554447 212 + 173848474 TGGCCATTGTGCCTTCTTCTTTGGGGtaaaaataaaataaaaataag---ag--agaga-aaaaaaagaaGGAAATAGGGCCAGGTGGTAGTTGGGGGACtgtgtgtg---------------tgtgagtttgtgtatgtgAAAGAGGGAAA----GAAAAG-----------GGGGATACAGAGTAGAGCACACCAGT--CTCCCCAACT-CCAAACCTGATGAAGTGGAAAGGGCT--GGGCTCCTTTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261425 210 +   2037526 TGGCCATTGTGCCTTCTTCTTTGGGGTaaaaataaaataaaaataag---ag--aaa---aaaaaaagaaggaaataGGGCCAGGTGGGAGTTGGGGGACtgtgtgtg---------------tgtgagtttgtgtatgtgAAAGAGGGAAA----GAAAAG-----------GGGGATACAGAGTAGAGCACACCAGT--CTCCCCAACT-CCAAACCTGATGAAGTGGAAAGGGCT--GGGCTCCTTTATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928447 210 + 122973662 TGGCCATTATGCCTTCTTCTTTGGGGTaaaaa-aaaataaaaataag---ag--aaaa--aaaaaaagaaGGAAATAGGGCCAGGTGGGAGTTGGTGGACTGTGTATG---------------TGTGAGTTTGTGTATGTGAAAGAGGGAGA----GAAAAG-----------GGGGATACAGAGCAGACCACACCGGT--CTCCCCAACT-CCAAACCTGATGAAGTGGAAAGGGCT--GGGCTCCTTTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30808041 213 + 172585720 TGGCCATTGTGCCTTCTTCTTTGGGGTaaaaataaaataaaaataag---ag--aaaaaaaaaaaaagaaGGAAATAGGGCCAGGTGGGAGTTGGAGGACTGTGTGTG---------------TGTGAGTTTATGTATGTGAAAGAGGAAGA----GAAAAA-----------GGGAATACAGAGCAGACCACACCAGT--CTTGCCAACT-CCAAACCTGATGAAGTGGAAAGGGCT--GGGCTCCTTTATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30097521 206 - 170955103 TGGCCATTGTGCCTTCTTCTTTGGGGTaaaaataaaataa----------ag--agaaaaaaaaaaagaaggaaataGGGCCAGGTGGGAGTTGGAGGACTGTGTGTG---------------TGTGAGTTTATGTATGTGAAAGAGGAAGA----GAAAAA-----------GGAAATACAGAGCAGACCACACCAGT--CTTGCCAACT-CCAAACCTGATGAAGTGGAAAGGGCT--GGGCTCCTTTATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346376 206 +   1495729 TGGCCATTGTGCCTTCTTCTTTGGGGTaaaaataaaataa----------ag--agaaaaaaaaaaagaaggaaataGGGCCAGGTGGGAGTTGGAGGACTGTGTGTG---------------TGTGAGTTTATGTATGTGAAAGAGGAAGA----GAAAAA-----------GGAAATACAGAGCAGACCACACCAGT--CTTGCCAACT-CCAAACCTGATGAAGTGGAAAGGGCT--GGGCTCCTTTATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     444296 216 -    863181 TGGCCATTGTGCCTTCTTCTTTGGGGTaaaaataaaataaaaataagagaaa--aaaaaaaaaaaaagaaGGAAATAGGGCCAGGTGGGAGTTGGGGGACTGTGTGTG---------------TGAGAGTTTACGTATGTGAAAGAGGAAGA----GAAAAA-----------GGGAATACAGAGCAGACCACACCAGT--CTTGCCAACT-CCAAACCTGATGAAGTGGAAAGGGCT--GGGCTCCTTTATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596459 215 -  71996105 TGGCCATTGTGCCTTCTTCTTTGGGGTaaaacgaaaataaaaataag---aggaaaaaaaaaaaaaagaaGGAAATAGGGCCAGGTGGGAGTTGGAGGACTGTGTGTG---------------TGAGAGTTTACGTATGTGAAAGAGGAAGA----GAAAAA-----------GGGAATACAGAGCAGACCACACCAGT--CTTGCCAACT-CCAAACCTGATGAAGTGGAAAGGGCT--GGGCTCCTTTATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289294 212 -    735854 TGGCCATTGTGCCTTCTCCTTTGGGGTAAAAATAaaataaaaataag---ag---agagagaaaaaagaaggaaaTAGGGCCAGGTGGGAGTTGGGGGACTGTGTGTG---------------TGAGAGTTTACGTATGTGAAAGAGGAAGA----GAAAAA-----------GGGAATACGGAGCAGACCACACCAGT--CTTGCCAACT-CCAAACCTGATGAAGTGGAAAGGGCT--GGGCTCCTTTATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     234783 208 -   1829203 TGGCCATTGTGCCTTCTCCTTTGGGGTaaaaataaaataaaaataag---ac-------agaaaaaaaaaGGAAATAGGGCCAGGTGGGAGTTGGGGGACTGTGTGTG---------------TGTGAGTTTATGTATGTGAAAGAGGAAGA----GAAAAA-----------GGGAATACAGAGCAGACCACACCAGT--CTTGCCAACT-CCAAACCTGATGAAGTGGAAAGGGCT--GGGCTCCTTTGTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424495 182 + 171630274 TGATCATTGTGACTTCTTCTTTGGGATA----------------------AA--------AATAAAAGATGGAAATAGGGCCAGGTGGGAGTTGAGGGAC--TGTGTG---------------TGTGAGTTTGTGTATGTGAGAGAGGGAGA----GAAAAA-----------GGAGACACTGAGCAGACCACACTGAT--CTCCCCCACT-CCAAACCCGATG----GGAAAGGGCT--GGTCCCCTTTACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239579 184 +    515838 TGATCATTGTGCCTTCTTCTTTGGGGTA----------------------AA--------AATAAAAGAAGGAAATAGGGCCAGGTGGGAGTTGAGGGACTGTGTGTG---------------TGTGAGTTTGTGTATGTGAGAGAGGGAGA----GGAAAG-----------GGAGATACCCAGCAGACCACACTGAT--CTCCCCCACT-CCAAACCCGATG----GGAAAGGGCT--GGTCCCCTTTACT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     868898 189 -   1771730 TGATCATTGTACCTTCTTCTTTGGGGTAAAAAT-----------------AA--------AATAAAAGAAGGAAATAGGGCCAGGTGGGAGTTGGGGGACTCtgtgtg---------------tgtgagtttgtgtctgtgAGAGAGGGAGA----GAAAAG-----------GGAGATGCCCAGCAGACCACACTGAT--CTCCCCCACT-CCAAACCAGATG----GGAAAGGGCT--GGTCCGCTTTATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     364105 189 -    383796 TGATCATTGTGCCTTCTTCTTTGGGGTAAAAAT-----------------AA--------AATAAAAGAAGGAAATAGGGCCAGGTGGGAGTTGGGGGACtgtgtgtg---------------tgtgagtttgtgtctgtgAGAAAGGGAGA----GAAAAG-----------GGAGATACCGAGCAGACCACACTGAT--CTCCCCGACT-CCAAACCCAATG----AGAAAGGTCT--GGTCCCCTTTATT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           281876 141 +  18854210 --------------------------------------------------------------------------------CCATGTAGGTGTTGGGGGATCATGTGTGCACACAGGTGGGGCACGTGCCTCTGTGTGTGTGTGAGAGAGAGATTGTATGAAG-----------GGGGAGAAAGAACAGGCTGTGACTGT--CTTTTCCACTCCCAAACCTGCTGAAGTGGAAAG-------------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26319261 142 +  26524999 -------------------------------------------------------------------------------ACCAGGTGGGAGGAAGGGGTC-----ATG---------------TTCAAGTGTG-------GAAGGGGAGACA----GAACAGCTGAGCCCATCGGCATCACAGGCTACACCACGGTAGTCCCTCTCCCACT-CCCAAATCCACCCCATGCTAAAGGCTAGGGACCCCGTTGTT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               326575 305 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I
e proCoq1.NW_012149775v1     131592 153 -   1411461 I

a score=489129.000000
s hg38.chr6_GL000254v2_alt  1450833 39 +   4827813 GAAATTCCAAACTAGAA--CCAAACTATTCTTGACCTGAAG
s panTro5.chr6             30320203 39 + 175400573 GAAATTCCAAACTAGAA--CCAAACTATTCTTGACCTGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554659 39 + 173848474 GAAATTCCAAACTAGAA--CCAAACTATTCTTGACCTGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261635 39 +   2037526 GAAATTCCAAACTAGAA--CCAAACTATTCTTGACCTGAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928657 39 + 122973662 GAAATTCCAAACTAGAA--CCAAACTATTCTTGATCTGAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30808254 39 + 172585720 GAAATTCCAAACTAGAA--CCAAACTATTCTTGACCTGCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30097727 39 - 170955103 GAAATTCCAAACTAGAA--CCAAACTATTCTTGACCTGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346582 39 +   1495729 GAAATTCCAAACTAGAA--CCAAACTATTCTTGACCTGAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     444512 38 -    863181 GAAACTCCAAACTAGAA---CAAACTATTCTTGACCTGAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596674 39 -  71996105 GAAATTCCAAACTAGAA--CCAAACTATTCTTGACCTGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289506 38 -    735854 GAAACTCCAAACTAGAA---CAAACTATTCTTGACCTGAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     234991 39 -   1829203 GAAATTCCAAACTAGAA--CCAAACTATTCTTGACCTGAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424677 39 + 171630274 GAAATCCCAAACTAGAA--CCAAACTATTCTTGACCTGAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239763 39 +    515838 GAAATCCCAAACTAGAA--CCAAACTATTCTTGACCTGAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     869087 39 -   1771730 GAAATCCCAAACTAGAA--CCAAACTATTCTCTACCTGAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     364294 39 -    383796 GAAATCCCAAACTAGAA--CCAAACTATTCTTGACCTGAAA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     131745 39 -   1411461 GAAATTCTAAACTAGAA--CCAAAGTATTTTCGACCTGAAG
i proCoq1.NW_012149775v1   I 153 I 92
s otoGar3.GL873550           282017 30 +  18854210 -----------CTAGAAGGCCCGtttttttttttcctgtag
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26319403 39 +  26524999 CAAATTCTGAACTGGAA--CCAGACTATTTTACAGCTGAAG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               326575 305 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I

a score=41529.000000
s hg38.chr6_GL000254v2_alt  1450872 5 +   4827813 AGCCT
s panTro5.chr6             30320242 5 + 175400573 AGCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554698 5 + 173848474 AGCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261674 5 +   2037526 AGCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928696 5 + 122973662 AGCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30808293 5 + 172585720 AGCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30097766 5 - 170955103 AGCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346621 5 +   1495729 AGCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     444550 5 -    863181 AGCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596713 5 -  71996105 AGCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289544 5 -    735854 AGCCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     235030 5 -   1829203 AGCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424716 5 + 171630274 AGATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239802 5 +    515838 AGACT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     869126 5 -   1771730 AGACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     364333 5 -    383796 AGACT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           282047 4 +  18854210 agac-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26319442 5 +  26524999 TGACT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               326575 305 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I
e proCoq1.NW_012149775v1     131784 92 -   1411461 I

a score=9090.000000
s hg38.chr6_GL000254v2_alt  1450877 1 +   4827813 A
s panTro5.chr6             30320247 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554703 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261679 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928701 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30808298 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30097771 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346626 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     444555 1 -    863181 A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596718 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289549 1 -    735854 A
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     235035 1 -   1829203 A
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424721 1 + 171630274 A
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     869131 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     364338 1 -    383796 A
i aotNan1.NW_018496904v1   C 0 C 0
s canFam3.chr35            26319447 1 +  26524999 G
i canFam3.chr35            C 0 C 0
e micMur3.chr6               326575 305 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I
e proCoq1.NW_012149775v1     131784 92 -   1411461 I
e saiBol1.JH378341           239807 0 +    515838 C
e otoGar3.GL873550           282051 0 +  18854210 C

a score=97699.000000
s hg38.chr6_GL000254v2_alt  1450878 11 +   4827813 GAAAGGTGCTG---
s panTro5.chr6             30320248 11 + 175400573 TAAAGGTGCTG---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554704 11 + 173848474 TAAAGGTGCTG---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261680 11 +   2037526 TAAAGGTGCTG---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928702 11 + 122973662 TAAAGGTGCTG---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30808299 11 + 172585720 TAAAGGTGCTG---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30097772 11 - 170955103 TAAAGGTGCTG---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346627 11 +   1495729 TAAAGGTGCTG---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     444556 11 -    863181 TAAAGGTGCTG---
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596719 11 -  71996105 TAAAGGTGCTG---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289550 11 -    735854 TAAAGGTGCTG---
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     235036 11 -   1829203 GAAAGGTGCTG---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424722 11 + 171630274 TAAAGGTGCTG---
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     869132 11 -   1771730 TAAAGGTACTG---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     364339 11 -    383796 TAAAGGTGCTG---
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           282051 12 +  18854210 --agagtgtcactc
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               326575 305 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I
e proCoq1.NW_012149775v1     131784 92 -   1411461 I
e canFam3.chr35            26319448  0 +  26524999 C
e saiBol1.JH378341           239807  0 +    515838 C

a score=163459.000000
s hg38.chr6_GL000254v2_alt  1450889 29 +   4827813 GATCG--------ggctggacgtggtggctcacgcct
s panTro5.chr6             30320259 29 + 175400573 GATCG--------ggctggacgtggtggctcacgcct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554715 29 + 173848474 GATCG--------ggctggacgtggtggctcacgcct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261691 29 +   2037526 GATCG--------ggctggatgtggtggctcacgcct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928713 29 + 122973662 GATCA--------ggccgggcgtggtggctcacgcct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30808310 29 + 172585720 GATCG--------ggctgggcatggtggctcacgcct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30097783 29 - 170955103 GATCA--------ggccgggcatggtggctcacgcct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346638 29 +   1495729 GATCA--------ggccgggcatggtggctcacgcct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     444567 29 -    863181 GATCG--------ggccgggcatggtggctcacgcct
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596730 29 -  71996105 AATCA--------ggccgggcatggtggctcatgcct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289561 29 -    735854 GATCA--------ggccgggcatggtggctcacgcct
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     235047 29 -   1829203 GATCA--------ggccgggcatggtggctcacacct
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           282063 37 +  18854210 tatcgccttcagtagagtgccgtggtgtcacacagct
i otoGar3.GL873550         C 0 I 247
e micMur3.chr6               326575 305 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I
e proCoq1.NW_012149775v1     131784 92 -   1411461 I
e canFam3.chr35            26319448  0 +  26524999 C
e saiBol1.JH378341           239807  0 +    515838 C
e aotNan1.NW_018496904v1     364350  0 -    383796 C
e cebCap1.NW_016107755v1     869143  0 -   1771730 C
e calJac3.chr4             30424733  0 + 171630274 C

a score=1459704.000000
s hg38.chr6_GL000254v2_alt  1450918 283 +   4827813 gtaatcccagcactttgggaggctga-ggcgggt--------ggatcacaa-gtcagcagttcgagaccagcttgaccaacctggtgaaaccccgtctctactaaaaatac----aaaaaactagctgggcat-ggtggtgtgcgcctgtaacaccagcgacttgggaagctgaggcaggagaattgcttgaaacca-gaaggcggaggttgcagtgagccgagattgcgccact-gcactctatcctgggcaataagagcaaaactctgtc--AAaaataaataaataaa------------------------------------------------------------------------------------taaacaaataa
s panTro5.chr6             30320288 283 + 175400573 gtaatcccagcactgtgggaggctga-ggtgggt--------ggatcacaa-gtcagcagttcgagaccagcttgaccaacacggtgaaaccccatctctactaaaaatac----aaaaaactagctgggcgt-ggtggtgtgcgcctgtaacaccagcgacttgggaagctgaggcaggagaatcgcttgaaacca-gaaggcggaggttgcagtgagccgagattgcgccact-gcactctatcctgggcaataagagcaaaactccgtc--aaaaataaataaataaa------------------------------------------------------------------------------------caaacaaataa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30554744 283 + 173848474 gtaatcccagcactgtgggaggctga-ggtgggt--------ggatcacaa-gtcagcagttcgagaccagcttgaccaacacggtgaaaccccatctctactaaaaatac----aaaaaactagctgggcgt-ggtggtgtgcgcctgtaacaccagcgacttgggaagctgaggcaggagaatcgcttgaaacca-gaaggcggaggttgcagtgagccgagattgcgccact-gcactctatcctgggcaataagagcaaaactccgtc--aaaaataaataaataaa------------------------------------------------------------------------------------taaacaaataa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     261720 284 +   2037526 gtaatcccagcactttgggaggctgagggcgggt--------ggatcacaa-gtcagcagttcgagaccagcttgaccaacatggtgaaaccccgtctctactaaaaatac----aaaaaactagctgggcgtgggtggtgtgcgcctgtaaccccagcgacttgggaagctga-gcaggagaatcgcttgaaacca-gaaggcggaggttgcagtgagccgagattgcgccact-gcactctatcctgggcaataagagcaaaactccgtc--AAaaataaataaataaa------------------------------------------------------------------------------------taaacaaataa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74928742 285 + 122973662 gtaatcccagcactttgggaggctga-ggcgggt--------ggatcacaaggtcagcagttcgagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatac---aaaaaaactagctgggcgt-ggtggtgtgcgcctgtaaccctagcgactttggaagctgaggcaggagaatcgcttgaaacca-gaaggcagaggttgcagtgagccgagattgcgccact-gcactctatcctgggcaataagagcaaaactccgtc--AAaaataaataaataaa------------------------------------------------------------------------------------taaatgaataa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30808339 287 + 172585720 gtaatcccagcactttgggaggctga-ggcgggt--------ggatcacaaggtcagcagttcgagaccagcctgaccaacatggtgaaaccccatctctactaaaaatac--aaaaaaaactagctaggtgt-ggtggcaggcgcctgtaatcctagcgacttggaaggctgaggcaggagaatcgcttgaaacca-gaaggtggaggttgcagtgtgccaagattgcgccact-gcactctagcctgggcaataagagcaaaactccatct-ctaaataaataaataag------------------------------------------------------------------------------------taaataaataa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30097812 297 - 170955103 gtaatccccgcactttgggaggctga-ggcgggtggatcacaggatcacaaggtcagcagttcgagaccagcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaaaaaaactagctagatgt-ggtggcaggagcctgtaatcctagcgacttggaaggctgaggcaggagaatcgcttgaaacca-gaaggcggaggttgcagtgtgccgagattgcgccact-gcactctagcctgggcaataagagcaaaactccatct-ctaaataaataaataag------------------------------------------------------------------------------------taaataaataa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346667 292 +   1495729 gtaatcccagcactttgggaggctga-ggcgggt--------ggatcacaaggtcagcagttcgagaccagcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaaaaaaactagctagatgt-ggtggcaggagcctgtaatcctagcgacttggaaggctgaggcaggagaatcgcttgaaaccaggaaggcggaggttgcagtgctgcgagattgcgccactggcactctagcctgggcaataagagcaaaactccatctcctaaataaataaataag------------------------------------------------------------------------------------taaataaataa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     444596 372 -    863181 gtaatcccagcactttgggaggctga-ggcgggt--------ggatcacaaggtcaacagttcgagaccagcctgaccaacatggtgaaaccccatctctactaaaaatat-gaaaaaaacctagctaggtgt-ggtggcgggcacctgtaatcctagcgacttgggaggctgaggcaggagaatcgcttgaaactg-gaaggcagaggttgcagtgtgccgagattgcgcccct-gcactctagcctgggcaataagagcaaaactccatct-ctaaataaataaataagtaaataaataaataaataaataaataaataaataaataaataaataagtaaatacacaaataaataaataaataaataaataaataaataaataa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29596759 308 -  71996105 gtaatcccagcactttgggaggctga-ggcgggt--------gtatcacaaggtcagcagttcgagaccagcctgaccaacatggtgaaaccccatctctactaaaaatat-gaaaaaaacctagctaggtgt-ggtggcgggcacctgtaatcctagcgacttgggaggctgaggcaggagaatcgcttgaaactg-gaaggcagaggttgcagtgtgccgagattgcgcccct-gcactctaacctgggcaataagagcaaaactccatct-ctaaataaataaataag----------------------------------------------------------------taagtaaatacataaataaataaataaataa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289590 308 -    735854 gtaatcccagcactttgggaggctga-ggcgggt--------ggatcacaaggtcagcagttcgagaccagcctgaccaacatgctgaaaccccatctctactaaaaatat-gaaaaaaacctagctaggtgt-ggtggcgggcacctgtaatcctagcgacttgggaggctgaggcaggagaatcgcttgaaactg-gaaggcagaggttgcagtgtgccgagattgcgcccct-gcactctagcctgggcaataagagcaaaactccatct-ctaaataaataaataag----------------------------------------------------------------taaatacacaaataaataaataaataaataa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     235076 283 -   1829203 gtaatcccagcactttgggaggctga-agcaggt--------ggatcacaaggtcagcagttcgagaccagcctgaccaacatggtgaaaccccatctctactaaaaatac--gaaaaatcctagctaggtgt-ggtggcgggcgcctgtaatcctagcgacttgggaggctgaggcaggagaatcgcttgaaact--ggaggcagaggttgcagtgtgcagagattgcgccact-gcactctagcctgggcaataagagcaaaactccatat-ctaaataaataaataag------------------------------------------------------------------------------------ta---aaataa
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               326575 305 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I
e proCoq1.NW_012149775v1     131784  92 -   1411461 I
e canFam3.chr35            26319448   0 +  26524999 C
e saiBol1.JH378341           239807   0 +    515838 C
e otoGar3.GL873550           282100 247 +  18854210 I
e aotNan1.NW_018496904v1     364350   0 -    383796 C
e cebCap1.NW_016107755v1     869143   0 -   1771730 C
e calJac3.chr4             30424733   0 + 171630274 C

a score=1521.000000
s hg38.chr6_GL000254v2_alt  1451201 1 +   4827813 a----
s panTro5.chr6             30320571 1 + 175400573 a----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30555027 1 + 173848474 a----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     262004 1 +   2037526 a----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74929027 5 + 122973662 ataaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30808626 1 + 172585720 a----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30098109 1 - 170955103 a----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346959 1 +   1495729 a----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     444968 1 -    863181 a----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29597067 1 -  71996105 a----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289898 1 -    735854 a----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     235359 1 -   1829203 a----
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           239807 1 +    515838 A----
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           282347 1 +  18854210 A----
i otoGar3.GL873550         I 247 C 0
e micMur3.chr6               326575 305 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I
e proCoq1.NW_012149775v1     131784 92 -   1411461 I
e canFam3.chr35            26319448 0 +  26524999 C
e aotNan1.NW_018496904v1     364350 0 -    383796 C
e cebCap1.NW_016107755v1     869143 0 -   1771730 C
e calJac3.chr4             30424733 0 + 171630274 C

a score=71200.000000
s hg38.chr6_GL000254v2_alt  1451202 11 +   4827813 taaaGTTGCTA
s panTro5.chr6             30320572  7 + 175400573 ----GTTGCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30555028  7 + 173848474 ----GTTGCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     262005 11 +   2037526 taaaGTTGCTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74929032 11 + 122973662 taaaGTTGCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30808627 11 + 172585720 taaaGGTGCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30098110 11 - 170955103 taaaAGTGCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346960 11 +   1495729 taaaAGTGCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     444969 11 -    863181 taaaGGTGCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29597068 11 -  71996105 taaaGGTGCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289899 11 -    735854 taaaGGTGCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     235360 11 -   1829203 taaaGGTGCTG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           239808 11 +    515838 TAAAGCTGCTG
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           282348 11 +  18854210 TAAAGTTGCTA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26319448 11 +  26524999 TACAGTTGCTG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               326575 305 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I
e proCoq1.NW_012149775v1     131784 92 -   1411461 I
e aotNan1.NW_018496904v1     364350  0 -    383796 C
e cebCap1.NW_016107755v1     869143  0 -   1771730 C
e calJac3.chr4             30424733  0 + 171630274 C

a score=800879.000000
s hg38.chr6_GL000254v2_alt  1451213 80 +   4827813 GATCGGC-TGAGATCATGCCCAGTGGGGTGGGAGGAGCT----AGACAAAGC----AGAGCAG-TTAGTGGACAAAAGAAAAGCTCAGAC
s panTro5.chr6             30320579 80 + 175400573 GATCGGC-TGAGATCATGCCCAGTGGGATGGGAGGAGCT----AGACAAAGC----AGAGCAG-TTAGTGGACAAAAGAAAAGCTCAGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30555035 80 + 173848474 GATCGGC-TGAGATCATGCCCAGTGGGATGGGAGGAGCT----AGACAAAGC----AGAGCAG-TTAGTGGACAAAAGAAAAGCTCAGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     262016 80 +   2037526 GATCGGC-TGAGATCATGCCCAGTGGGATGGGAGGAGCT----AGACAAAGC----AGAGCAG-TTAGTGGACAAAAGAAAAGCTCAGAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74929043 80 + 122973662 GATGGGC-TGAGATCATGCCCAGTGGGATGGAAGGAGCT----GGACAAAGA----AGAGCAG-TTACTGGacaaaagaaaagctcagaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30808638 80 + 172585720 GATCGAC-TGAGATCATGCCCAGTGGGATGGGAGGAGCT----GGATAAAAC----AGAGCAG-TTACTGGacaaaagaaaaactcagac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30098121 80 - 170955103 GATCGAC-TGAGATCATGCCCAGTGGGATGGGAGGAGAT----GGATAAAAC----AGAGCAG-TTACTGGacaaaagaaaaactcagac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     346971 78 +   1495729 GATCGAC-TGAGATCATGCCCAGTGGGATGGAGGGAG-T----GGATAAAAC----AGAGCAGTTTACTGGACAAA--GAAAACTCAGAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     444980 80 -    863181 GATTGAC-TGAGATCATGCCCAGTGGGATGGGAGGAGGT----GGATAAAAC----AGAGCAG-TTACTGGacaaaagaaaaactcagac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29597079 80 -  71996105 GATCAAC-TGAGATCATGCCCAGTGGGATGGGAGGAGGT----GGATAAAAC----AGAGCAG-TTACTGGacaaaagaaaaactcagac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289910 80 -    735854 GATTGAC-TGAGATCATGCCCAGTGGGATGGGAGGAGGT----GGATAAAAC----AGAGCAG-TTACTGGacaaaagaaaaactcagac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     235371 80 -   1829203 GATCGAC-TGAGATCATGCCCAGTGGGATGGGAGGAGCT----GGATAAAAC----AGAGCAG-TTACTGGACAAAAGAAAAACTCAGGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424733 79 + 171630274 GATTGGC-TGAGATCATGCCCAGCGGGATAGGAGGAGCT----GGACAAAGC----AGAGCA--TTAGTGGATGAAAGAAAAACTCAGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239819 87 +    515838 GATTGGC-TGAGATCATGCCCAGTGGGATAGGGGGAGCTATTAGTGGAGAGCTATTAGAGCA--TTAGTGGACAAAAGAAAAACTCAGAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     869143 79 -   1771730 GATTGGT-TGAGATCATGCCCAGTGGGATAGGAGGAGCT----GGGCAAAGC----AGAGCA--TTAGTGGACAGAAGAAAAACTCAGAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     364350 79 -    383796 GATTGGC-TGAGATAATGCCCAGTGGGATAGGAGGAGCT----GGACAAAGC----GGAGCA--TTACTGGACAAAAGAAAAACTCAGAC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           282359 77 +  18854210 GATCAGCTTTAGATTATACCTGGTGGGATGGGA-GAGCT----GCAAAAAGC----AGAGCAA-TTACTGGAAAAGAGAAAAGCTCA---
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26319459 63 +  26524999 GATCAGA-TGAGATGACACGGAGTGGGATGGTA-GAGCC----AGACCAGGC----ACAGCA--TTGGTG---------------CAAAC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               326575 305 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I
e proCoq1.NW_012149775v1     131784 92 -   1411461 I

a score=1237577.000000
s hg38.chr6_GL000254v2_alt  1451293 109 +   4827813 AACAAAATTAAGAATAAAA-CAAAACATGCTTTCCTGTTTATGTCTGCCGAGTGGAGATTCCCGGCT-GAATGGGT-GGAGATCTTGGGGCATTGCCCTGGTCCTCCTTTTC
s panTro5.chr6             30320659 109 + 175400573 AACAAAATTAAGAATAGAA-CAAAACATGCTTTCCTGTTTATGTCTGCCGAGTGGAGATTCCCGGCT-GAATGGGT-GGAGATCTTGGGGCATTGCCCTGGTCCTCCTTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30555115 109 + 173848474 AACAAAATTAAGAATAGAA-CAAAACATGCTTTCCTGTTTATGTCTGCCGAGTGGAGATTCCCGGCT-GAATGGGT-GGAGATCTTGGGGCATTGCCCTGGTCCTCCTTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     262096 109 +   2037526 AACAAAATTAAGAATAAAA-CAAAACATGCTTTCCTGTTTATGTCTGCCGAGTGGAGATTCCCAGCT-GAATGGAT-GGAGATCTTGGGGCATTGCCCTGGTCCTCCTTTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74929123 109 + 122973662 aacaaaattaagaacaaaa-caaaacaTGATTTCCTGTTTATGTCTGCCGAGTGGAGATTCCTGGCT-GAATGGGT-GGAGATCTTGGGGCATTGCCCTGGTCCTCCTTTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30808718 109 + 172585720 aacaaaactaagaacaaaa-caaaacaTGCTTTCCTGTTTATGTCTTCTGAGTGGAGATTCCTGACT-GAATGGGT-GGGGATCTTGGGGCATTGCCCTGGTCCTCCTTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30098201 109 - 170955103 aacaaaactaagaacaaaa-caaaacaTGCTTTCCTGTTTATGTCTTCTGAGTGGAGATTCCTGACT-GAATGGGT-GGGGATCTTGGGGCATTGCCCTGGTCCTCCTTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     347049 107 +   1495729 AAC-AAACTAAGAACAAAA-CAAAACATGCTTTCCTGTTTATGTCTTCTGAGTGGAGATTCCTGACTGGAATGGGTGGGGGATCTTGGGGCATG--CCTGGT-CTCCTTTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     445060 109 -    863181 aacaaaattaagaacaaaa-caaaacaTGCTTTCCTGTTTATGTCTTCTGAGTGGAGATTCCTGACT-GAATGGGT-AGGGATCTTGGGGCATTGCCCTGGTCCTCCTTTTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29597159  87 -  71996105 aacaaaattaagaacaaaa-caaaacaTGCTTTCCTGTTTATGTCTTCTGAGTG------------------------GGGATCTTGGGGCATTGCCCTGGTCCTCCTTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     289990 109 -    735854 aacaaaattaagaacaaaa-caaaacaTGCTTTCCTGTTTATGTCTTCTGAGTGGAGATTCCTGACT-GAATGGGT-AGGGATCTTGGGGCATTGCCCTGGTCCTCCTTTTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     235451 109 -   1829203 AACAAAATTAAGAACAAAA-CAAAACATGCTTTCCTGTTTATGTCTTCTGAGTGAAAATTCCTGACT-GAATGGGT-GGGGATCTTGGGGAATTGCCCTGGTCCTCCTTTTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424812  91 + 171630274 CACAAAATTAAGAAT-------------------CTGCTTATGTCTGCCGAGTGGAGATGACTGGCT-GAATGGGT-GGGGATCTTGGGGCATTGCCCTGGTCCTCCTTTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239906  91 +    515838 CACAAAATTAAGAAT-------------------CTGTTTATGTCTGCCGAGTGGAGATGCCTGGCT-GAATGGGT-GGGGATCTTGGGGCATTGCTCTGGTTCTCCTTTTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     869222  91 -   1771730 CACAAAATTAAGAAT-------------------CTGTTTATGTCTGCCGAGTGGGGATGCCTGGCT-AAATGGGT-GGGGATCTTGGGGCATTGCCCTGGTCCTCCTTTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     364429  91 -    383796 CACAAAATTAGGAAT-------------------CTGTTTATGTCTGCCGGGTGGAGATGCCTGGCT-GAATGGGT-GGGGATCTTGGGGCATTGCTCTGGTCCTCCTTTTC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               326880 110 + 123392446 AACAAAATTAACAACAAAACCAAAACACAGTTCCCTGTTTATGTCTGCTGAGTAGAGATTCCTGGCT-GAATGGGT-GGGGTTCTTGGGGCATTGCTCTGGTCCTGCTTTTC
i micMur3.chr6             I 305 I 147
s proCoq1.NW_012149775v1     131876 110 -   1411461 AACAAAATTAAGAACAAAAACAAAACACGATTCCCTGTTTATGTCTGTTGAGCGGAGATTCCTGGCT-GAATAGGT-GGGGTTCTTGGGGCATTGCCCTGGTCCTGCTTTTC
i proCoq1.NW_012149775v1   I 92 C 0
s otoGar3.GL873550           282436 101 +  18854210 AACAAAATTAAGAACAAAA-CAAAACATGGTCCCCTGTTTATATCTGCTGAGCAGAGATTCCTGACT-GAATGGAT-GTGGTTC--------TTGCCCTTGGCCTCCTTTTC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26319522  66 +  26524999 AACAAAATTGAGAACAGAA-GAAAACATCCTTCCCTG-----------------GAGACTCCTGGCT-GGATCGGG-G--------------------------TCTTCTTC
i canFam3.chr35            C 0 C 0
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I

a score=1216054.000000
s hg38.chr6_GL000254v2_alt  1451402 128 +   4827813 TGTAGTCCCAAGGGGAAGTGTTTGTGTATGGggggctgggggttggggtgggggaggtgggtgtggAACTCCAGGTGATAATTTC----A--GAAGATTCCATCTAGCTGTCTTTATGCCCACCTTAGA-CCAAC
s panTro5.chr6             30320768 128 + 175400573 CGTAGTCCCAAGGGGAAGTGTTTGTGTATGGggggctgggggttggggtgggggaggtgggtgtggAACTCCAGGTGATAATTTC----A--GAAGATTCCATCTAGCCGTCTTTATGCCCACCTTAGA-CCAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30555224 128 + 173848474 CGTAGTCCCAAGGGGAAGTGTTTGTGTATGGggggctgggggttggggtgggggaggtgggtgtggAACTCCAGGTGATAATTTC----A--GAAGATTCCATCTAGCCGTCTTTATGCCCACCTTAGA-CCAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     262205 127 +   2037526 CGTAGTCCCAAGGGGAAGTGTTTGTGTATggggggct-ggggttggggtgggggaggtgggtgtggAACTCCAGGTGATAATTTC----A--GAAGATTCCATCTAGCTGTCTTTATGCCCACCTTAGA-CCAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74929232 128 + 122973662 CGTAGTCCCAAGGGGAAGTGTTtgtgtatgggggtctgggggttggggtgggggaggtgggtgtggAACTCCAGGTGATAATTTC----A--GAAGATTCCATCTAGCTGTCTTTATGCCCACCTTAGA-CCAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30808827 126 + 172585720 CATAGTCCCAAGGGGAAGTGTTTGTGT--GGGGGGCTGGGGATTGGGGTGGGGGACGAGGGTGTGGAACTCCAGGTGATAATTTC----A--GAAGATTCCATCTAGCTGTCTTTATGCCCACCTTAGA-CCGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30098310 126 - 170955103 CATAGTCCCAAGGGGAAGTGTTTGTGT--GGggggctggggattggggtgggggacgagggtgtggAACTCCAGGTGATAATTTC----A--GAAGATTCCATCTAGCTGTCTTTATGCCCACCTTAGA-CCGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     347156 124 +   1495729 CATAGTCCCAA-GGGAAGTGTTTGTGT---GGGGGCTGGGGATTGGGTGGGGGGACGAGGGTGTGGAACTCCAGGTGATAATTTC----A--GAAGATTCTATCTAGCTG-CTTTATGCCCAACCTATAGACGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     445169 126 -    863181 CATAGTCCCAAGGGGAAGTGTTTGTGT--GGGGGGCTGGGGATTGGGGTGGGGGACGAGGGTATGGAACTCCAGGTGATAATTTC----A--GAAGATTCCATCTAGCTGTCTTTATGCCCACCTTAGA-CCAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29597246 126 -  71996105 CGTAGTCCCAAGCGGAAGTGTTTGTGT--GGGGGGCTGGGGATTGGGGTGGGGGAAGAGGCTATGGAACTCCAGGTAATAATTTC----A--GAAGATTCCATCTAGCTGTTTTTATGCCCACCTTAGA-CCAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     290099 126 -    735854 CATAGTCCCAAGGGGAAGTGTTTGTGT--GGGGGGCTGGGGATTGGGGTGGGGGACGAGGGTATGGAACTCCAGGTGATAATTTC----A--GAAGATTCCATCTAGCTGTCTTTATGCCCACCTTAGA-CCGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     235560 126 -   1829203 CATAGTCCCAAGGGGAAGTGTTTGTGT--GGggggctggggattggggtgggggaagagggtgtggAACTCCAGGTGATAATTTC----A--GAAGATTCCATCTAGCTGTCTTTATGCCCACCTTAGA-CCAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30424903 117 + 171630274 CATAGTCCCAAGGGGAAGTGTTTGTGTATGGAGGGCTGGGGGTCAGGGCAGGGGAGGAGAGCATGGAACTCCTGGTGATAATTTC----A--GAACATTCCATCTAGCTGTCTTTTTT------------CCAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           239997 128 +    515838 CAGAGTCCCAAGGGGAAGTGTTTGTGTATGGAGGGCTGGGGGTAAGGGCAGGGGAGGAGGGCGTGGAACTCCTGGTGATACTTTC----A--GAACGTGCCATCTAGTTGTCTGTATTCCAGGCTTAGA-CCAAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     869313 127 -   1771730 CAGAGTCCCAAGGGAAAGTGTTTATGTATGGAGGGCTGGGGGTCAGGGCAGAGGA-GAGAGCGTGGAACTCCTGGTGATAATTTC----A--GAACATTCCTTCTAGCTGTCTTTGTTCCAGGCTTAGA-CCAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     364520 128 -    383796 CATAGCCCCAACAGGAAGTGTTTGTGTATGGAGAGCTGGGGGTCGGGGCAGGGGAGGAGGGCGTGGAACTCCTGGTGATAATTTC----A--GAACATTCCATCTAGCTGTCTTTATTCCAGGCTTAGA-CCAAC
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     131986 120 -   1411461 CATAGGTGCATGGGGAGGTGTT----TGTGTGGCAGTGGGGG-TGGTGGGGGTG----GGGTGCGGAGTTCT-GGTGGTATTTCTAGAAA--GAAGATTCCAACCAGCTC--TTTATTCCTGGCTTAGA-CAAGG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           282537 125 +  18854210 CATAGGTGCACGGGGAGGTGTTTGTGTGTGTGGAAGTGGGGGTTAGTGGTGGTG----GGGTGTGGAGCTCT-GGGGATATTTTTAGGAA--GAAGACTCCAAGCAGCTG--TTTATTCTTGTCTTGGA-CAAGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26319588 105 +  26524999 CATAGGCTCGCGGGA----------------------GGGGTGCAGGGAAGGGTACATGGGGGGGGGCATCC-TCTGATATTCCC----AGGGAGAAAACCATCCAGCTGACTTGGCTCC--GCTTAGA-CAAAC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               326990 147 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I

a score=3332490.000000
s hg38.chr6_GL000254v2_alt  1451530 240 +   4827813 ACAGTCTTCACATTAAGGGGAGTCCTTACAAATACTAACCCTTCTTCCTAGTTGCAAACACAGAAAGGTTTATGAAA---AATATCTGGCCGAACATCTAAAACCCAAGTCATCCACT----ACTGTTCTG-CTGATTTCTGTTTCCCTGTAAGGCTGGAAGAGGTTTCTCCCCAGAATGTCACTGATTTTGAATTTATTTTCTCTTCTTCTGTAGGCAGGAGGAGACA-----CCAGTGTGCACCAGAGAAG
s panTro5.chr6             30320896 240 + 175400573 ACAGTCTTCACATTAAGGGGAGTCCTTACAAATACTAACCCTTCTTCCTAGTTGCAAACACAGACAGGTTTATGAAA---AATATCTGGCCGAACATCTAAAACCCAAGTCATCCACT----ACTGTTCTG-CTGATTTCTGTTTCCCTGTAAGGCTGGAAGAAGTTTCTCCCCAGAATGTCACTGATTTTGAATTTATTTTCTCTTCTCCTGTAGGCAGGAGGAGACA-----CCAGTGTGCACCAGAGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30555352 240 + 173848474 ACAGTCTTCACATTAAGGGGAGTCCTTACAAATACTAACCCTTCTTCCTAGTTGCAAACACAGACAGGTTTATGAAA---AATATCTGGCCGAACATCTAAAACCCAAGTCATCCACT----ACTGTTCTG-CTGATTTCTGTTTCCCTGTAAGGCTGGAAGAGGTTTCTCCCCAGAATGTCACTGATTTTGAATTTATTTTCTCTTCTTCTGTAGGCAGGAGGAGACA-----CCAGTGTGCACCAGAGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     262332 240 +   2037526 ACGGTCTTCACATTAAGGGGAGTCCTTACAAATACTAACCTTTCTTCCTAGTTGCAAACACAGACAGGGTTATGAAA---AATATCTGGCCAAACATCTAAAACCCAAGTCATCCACT----ACTGTTCTG-CTGATTTCTGTTTCCCTGTAAGGCTGGAAGAGGTTTCTCCCCAGAATGTCACTGATTTTGAATTTATTTTCTCTTCTTCTGTAGGCAGGAGGAGACA-----CCAGTGTGCACCAGAGAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74929360 240 + 122973662 ACAGTCTTCACAGTAAGGGAAGTCCTTACAAATATCAACCCTTCTTCCTAGTTGCAAACACAGACAGGTTAATGAAA---AATATCTGGGCGAACATCTAAAACCCAAGTCATCCACT----ACTGTTCTG-CTGATTTCTGTTTCCCTGTAAGGCTGGAAGAGGTTTCTCCCCAGAATGTCACTGATTTTGAATTTATTTTCTCTTCTTCTATAGGCAGCAGGAGACA-----CCAGTGTGCACCAGAGAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30808953 238 + 172585720 ACAGTCTTCACAGTAAAGGGAGTCCTTACAAATACCAACCCTTCTTCCTAGTTGCAAACACAGACAGGTCTATGAAA---AATATCTGTCCGAACATTTAAAACCCAAGTCCTCCACT----ACTGTTCTG-CTGATT--TGTTTCCCTGAAAGGCTGGAAGAGGGATCTCCCCAAAATGTCACTGATTTTGAATTTATTTTCTCTTCTTCTCTAGTCAGGAAGAGACA-----CCAGCGTGTACCAGAGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30098436 238 - 170955103 ACAGTCTTCACAGTAAAGGGAGTCCTTACAAATACCAACCCTTCTTCCTAGTTGCAAACACAGACAGGTCTATGAAA---AATACCTGTCCGAACATTTAAAACCCAAGTCATCCACT----ACTGTTCTG-CTGATT--TGTTTCCCTGTAAGGCTGGAAGAGGGATCTCCCCAAAATGTCACTGATTTTGAATTAATTTTCTCTTCTTCTATAGTCATGAGGAGACA-----TCAGCGTGTACCAGAGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     347280 238 +   1495729 ACAGTCTTCACAGTAAAGGGAGTCCTTACAAATACCAACCCTTCTTCCTAGTTGCAAACACAGACAGGTCTATGAAA---AATACCTGTCCGAACATTTAAAACCCAAGTCATCGACT----ACTGTTCTG-CTGATT--TGTTTCCCTGTAAGGCTGGAAGAGGGATCTCCCCAAAATGTCACTGATTTTGAATTAATTTTCTCTTCTTCTATAGTCATGAGGAGACA-----TCAGCGTGTACCAGAGAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     445295 238 -    863181 ACAGTCTTCACAGTAAAGGGAGTCCTTACAAATACCAACCTTTCTTCCTAGTTGCAAACACAGACAGGTCGATGAAA---AATATCTGTCCGAACATTTAAAACCCAAGTCATCCACT----ACTGTTCTG-CTGATT--TGTTTCCCTATAAGGCTGGAAGAGGGATCTCCCCAAAATGTCACTGATTTTGAATTTATTTTCTCTTATTCTGTAGTCAGGAAGAGACA-----CCAGCGTGTACCAGAGAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29597372 238 -  71996105 ACAGTCTTCACAGTAAAGGGAGTCCTTACAAATACCAACCTTTCTTCCTAGTTGCAAATACAGACAGGTCTATGAAA---AATATCTGTCTGAACATTTAAAACCCAAGTCATCCACT----ACTGTTCTG-CTGATA--TGTTTCCCTATAAGGCTGGAAGAGGGATCTCCCCAAAATGTCACTGATTTTGAATTTATTTTCTCTTCTTCTATAGTCAGGAAGAGACA-----CCAGCGTGCACCAGAGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     290225 238 -    735854 ACAGTCTTCACAGTAAAGGGAGTCCTTACAAATACCAACCCTTCTTCCTAGTTGCAAACACAGACAGGTCTATGAAA---AATATCTGTCCGAACATTTAAAACCCAAGTCATCCACT----ACTGTTCTG-CTGATT--TGTTTCCCTGTAAGGCTGGAAGAGGGATCTCCCCAAAATGTCACTGATTTTGAATTTATTTTCTCTTATTCTGTAGTCAGGAAGAGACA-----CCAGCATGTACCAGAGAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     235686 238 -   1829203 ACAGTCTTCACAGTAAAGGGAGTCCTTACAAATACCAACCTTTCTTCCTAGTTGCAAACACAGACAGGTCTATGAAA---AATATCTGTCCGAACATTTAAAACTCAAGTCATCCACT----ACTGTTCTG-CTGATT--TGTTTCCCTGTAAGGCTGGAAGAGGGATCTCCCCAAAACGTCACTGATTTTGAATTTATTGTATCTTCTTCTATAGTCAGGAAGAGACA-----CCAGCATGCACCAGAGAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30425020 238 + 171630274 ACAGTCTTCAAAGTAAAGGGAGTCCTTACAAATACCAACCCTTCTTCCTAATTGCAAACACAGACAGGTTTTTTAAA---AATATCTGGCCAAACATCTAAAATCCAAGTCATCCACT----ACTGGTCTG-CTGATTTCTGTTTCCCTGTAAGGCTGGAAGAGGGATTTCCCCAAAATGTCACTGATTTTGAATTTATTTTCTCTTCTTCTATAGTCAGGAGGAGACA-----CCA--ATGCACCTGAGAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           240125 240 +    515838 ACAGCCTTCAGAGTAGAGGGAGTCCTTACAAACACCAACCCTTCTTCCTAGCTGCAAACACAGACAGGTTTTTTAAA---AATATCTGGCAGAACATCTAAAATCCAAGTCATCCAGT----ACTGTTCTG-CTGATTTCTGTTTCCCTATAAGGCTGGAAGAGGGATTTCTGCAAAATGTCACTGATTTAAAATTTATTTTCTCTTCCTCTATAGTCAGGAGAAGATG-----CCAGTGTGCACCAGGGAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     869440 236 -   1771730 ACAGCCTTCGGAGTAAACGGTGTCCTTACAAATACCAACCCTTCTTCCTAGTTGCAAACACAGATGGGTTTCTTAAA---CATATCTGGCCGAACATCTAAAATCCAAGTCATCCACT----ACTGTTCTG-CTGATTTCTGTTTCCCTGTAAGGCTGGAAGAGGGATTTCCGCAAAATGTCACTGAT----AATTTATTTTCTTTTCCTCTATAGTCAGGAGAAGACA-----CCAGTGTGCACCAGAGAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     364648 238 -    383796 ACAGCCTTCAGAGTAAAGGGAGTCCTTACAAATACCAACCCTTCTTGCTAGTTGCAAACACAGACAGGTTTTTTAAA---AATATCTGGCCAAACATCTAAAATCCAAGTCATCCACT----AGTGTTCTG-CTGATT--TGTTTCCCTGTAAGGCTGGAAGAGGGATTTCCCCAAAATGTCACTGATTTTGAATTTATTTTCTCTTCTTCTATAGTCAGGAGGAGACA-----CCAGTGTGCACCAGAGAAG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               327137 245 + 123392446 ACAGCCTTCACAATGAAGGGAGTACTTACAAATACCAACCCTTCGTCCTAGTTGCAAACCTGGACAAGTGTTTGAAA---CATATCTGACCAAACATCTAAAGCCCGAGTCATACACTTCTGTCTGTTCTGGCCAATTTCTGTTTCCTTGCAAGACTGGAAGAGGGATTTCCCCAAAATGTCATTGACTTTGAATCTATTTTCTCTTCTTCTATGGTTAGGAAGAGACA-----CCAGTGTGCACCAGAGAAG
i micMur3.chr6             I 147 I 302
s proCoq1.NW_012149775v1     132106 241 -   1411461 ACAGCCTTCACAATGAAGGGAGTCCTTACAAATACCAACCCTTCATTCTCGTTGCAAACCTGGACAAGTTTTTCAAA---AATATCTGACCAAACATCTAAAGCCCAAGTCATCTACT----TCTGTTCTGGCCAATTTCTGTTTCCCTGCAAGACTGGAACAGGGATTTCCCCAAAACATCATTGACTTTGATTCTATTTTCTCTTCTTCTATGGTTAGGAAGAGACG-----CCAGTGTGCGCCAGAGAAG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           282662 239 +  18854210 ATAGCGTTCTCAATGAAGGGAGTCCTTACAAATACCAACCCTTCTTCCTAGTTGCAAACCCAGACAAGTTTTTGAAA---AATATCTGACCAAACATCTAAAGCCTAAATCATCCACT------TGTTCCATTTGATTTCTGTTTCCCTGCAAGACTGGAAGAGTGATTTCCCCCAAATGTCACTAACTTTGAATCTACTTTCTTTTGTTCTTTGGTTAGGAGGAGATA-----TCAGTGTGTACCAGAGAAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26319693 247 +  26524999 --AGCTTCTGCAGTGAAGGGAGTCCTCACAAATATGGAACCATCTTCCTGGTTGCAAACCCAGACCCATTTTTCAAAAACAATATCGGACCAAATATCTAAAGCCCAAGATGTCCCCT----TCTGTTCTCCTTGATTTCTGCTTTCCTGTGAGGCTGGAAGATGGATTTCCCCGGAATGTCATTGATTTTTAATCTATTTTCCCTTTTTCTGAAGTTAGGAATGGACAGAGCTCCAGTGTGAACCAGGGAAG
i canFam3.chr35            C 0 C 0
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I

a score=215543.000000
s hg38.chr6_GL000254v2_alt  1451770 18 +   4827813 GAGAAGTCA-------GAGATGACA
s panTro5.chr6             30321136 18 + 175400573 GAGAAGTCA-------GAGATGACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30555592 18 + 173848474 GAGAAGTCA-------GAGATGACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     262572 18 +   2037526 GAGAAGTCA-------GACATGACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74929600 18 + 122973662 GAGAAGCCA-------GAGATGACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30809191 18 + 172585720 GAGAAGCCA-------GAGATGACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30098674 18 - 170955103 GAGAAGCCA-------GAGATGACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     347518 18 +   1495729 GAGAAGCCA-------GAGATGACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     445533 18 -    863181 GAGAAGCCA-------GAGATGACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29597610 18 -  71996105 GAGAAGCCA-------GAGATGACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     290463 18 -    735854 GAGAAGCCA-------GAGATGACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     235924 18 -   1829203 GAGAAGCCA-------GAGACGACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30425258 18 + 171630274 TAAAAGCCA-------GAGATCACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           240365 18 +    515838 TAAAAGCCA-------GAGATCACA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     869676 18 -   1771730 CAAAAGCCA-------GAGATCACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     364886 18 -    383796 CAAAAGCCA-------GAGATCACA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     132347 18 -   1411461 TAAAAGCCA-------GAGATCACA
i proCoq1.NW_012149775v1   C 0 I 85
s otoGar3.GL873550           282901 18 +  18854210 TAAAAGTCA-------GAAAACACA
i otoGar3.GL873550         C 0 I 2
s canFam3.chr35            26319940 25 +  26524999 GAGAAGCCACTTGCTGGAGATGACA
i canFam3.chr35            C 0 I 2
e micMur3.chr6               327382 302 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I

a score=867961.000000
s hg38.chr6_GL000254v2_alt  1451788 84 +   4827813 GTCCCTGCCTGA-GGCC--ATCTCTGGTCCACCAGACAACTCATCACCAACTTCCCAACAGCCACTGCTCTAGGCCAGGTGTCCACA
s panTro5.chr6             30321154 84 + 175400573 GTCCCTGCCTGA-GGCC--ATCTCTGGTCCACCAGACAACTCATCACCAACTTCCCAACAGCCACTGCTCTAGGCCAGGTGTCCACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30555610 84 + 173848474 GTCCCTGCCTGA-GGCC--ATCTCTGGTCCACCAGACAACTCATCACCAACTTCCCAACAGCCACTGCTCTAGGCCAGGTGTCCACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     262590 84 +   2037526 GTCCCTGCCTGA-GGCC--ATCTCTGGTCCACCAGACAACTCATCACCAACTTCCCAACAGCCACTGCTCTAGGCCAGGTGTCCACG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74929618 84 + 122973662 GTCCCTGCCTGA-GGCC--ATCTCTGGTCCACCAGACAACTCAGCACCAACTTCCCAACAGCCACTGCTCTAGGCCAGGTGTCCACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30809209 84 + 172585720 GTCCCTGCCTGA-GGCC--ATCTCTGGTCCACCAGACAACTTAGCATCAACTTCCCAACAGCCACTGCTCCGGGCCAGGTGTCCACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30098692 84 - 170955103 GTCCCTGCCTGA-GGCC--ATCTCTGGTCCACCAGACAACTTAGCACCGACTTCCCAACAGCCACTGCTCCGGGCCAGGTGTCCACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     347536 84 +   1495729 GTCCCTGCCTGA-GGCC--ATCTCTGGTCCACCAGACAACTTAGCACCGACTTCCCAACAGCCACTGCTCCGGGCCAGGTGTCCACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     445551 84 -    863181 GTCCCTGCCTGA-GGCC--ATCTCTGGTCCACCAGACAACTTAGCACCAACTTCCCAACAGCCACTGCTCCAGGCCAGGTGTCCATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29597628 84 -  71996105 GTTCCTGCCTGA-GGCC--ATCTCTGGTCCACCAGACAACTTAGCACCAACTTCCCAACAGCCACTGCTCCAGGCCAGGTGTCCACG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     290481 84 -    735854 GTCCCTGCCTGA-GGCC--ATCTCTGGTCCACCAGACAACTTAGCACCAACTTCCCAACAGCCACTGCTCCAGGCCAGGTGTCCATG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     235942 84 -   1829203 GTTCCTGCCTGA-GGCC--ATCTCTGGTCCACCAGACAACTTAGCACCAACTTCCCAACAGCCACTGCTCCAGGCCAGGTGTCCACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30425276 85 + 171630274 GTCCTTGCCTGAGGGCC--ATCTCTGGCCcaccagacaactcagcacccacttcctgacagacactgctctaggccaggcatccatg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           240383 85 +    515838 GTCCTTGCCTGAGGGCC--ACTGCTGGCTCACCAGACAACTCAGCACCAACTTCCCAACAGACACTGCTCCAGGCCAGGCATCCACG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     869694 85 -   1771730 GTCCTTGCCTGAGGGCC--ACCTCTGGCCCACCAGACAACTCAGCACCAACTTCCCAACAGACACTGCTCTAGACCAGGCATCCACG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     364904 85 -    383796 GTCCTTGCCTGAGGGCC--ACCTCTGGCCCTCCAGACAACTCAGCACCAACTCCCCAATAGACACTGCTCTAGCCCAGGCATCCACG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           282921 82 +  18854210 TTCCCTGGCTAAAGGCCTTGCCTCTGGTTCACCAGACAA---AGCACCAATTTCATGATGGCCACCGCAACAGGATAAGGACCTC--
i otoGar3.GL873550         I 2 C 0
s canFam3.chr35            26319967 62 +  26524999 GTCCCTGCCTGA-GGGC-----------CCCACAGGCATCTGAGCGTCCACCCCGCTG-AGCCACT------------TGGTCCATT
i canFam3.chr35            I 2 C 0
e micMur3.chr6               327382 302 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I
e proCoq1.NW_012149775v1     132365 85 -   1411461 I

a score=849721.000000
s hg38.chr6_GL000254v2_alt  1451872 71 +   4827813 TGGGGAATAGGTCCAGGCCC--TCTATGGCTCTCGCAGGAGTCAGGGAGGCAGATAAATAACATATCACGAAG
s panTro5.chr6             30321238 71 + 175400573 TGGGGAATAGGTCCAGGCCC--TCTATGGCTCTCGCAGGAGTCAGGGAGGCAGATAAATAACATATCACGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30555694 71 + 173848474 TGGGGAATAGGTCCAGGCCC--TCTATGGCTCTCGCAGGAGTCAGGGAGGCAGATAAATAACATATCACGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     262674 71 +   2037526 TGGGGAATAGGTCCAGGCCC--TCTATGGCTCTCGCAGGAGTCAGGGAGGCAGATAAATAACATATCACGAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74929702 71 + 122973662 TGGGGAATAGGTCCAGGCCC--TCTATGGCTCTCGCAGGAGTCAGGGAGGCAGATAAATAACATATCACGAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30809293 73 + 172585720 TGGGGAATAGGTCCAGCCCCTTTTTATGGCTCTCGCAGGAGTCAGGGAAGCAGATAAGTAACATATCACAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30098776 73 - 170955103 TGGGGAATAGGTCCAGGCCCTTTTTATGGCTCTCGCAGGAGTCAGGGAAGCAGATAAGTAACATATCACAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     347620 73 +   1495729 TGGGGAATAGGTCCAGGCCCTTTTTATGGCTCTCGCAGGAGTCAGGGAAGCAGATAAGTAACATATCACAAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     445635 73 -    863181 TGGGGAATAGGTCCAGGCCCTTTTTATGGCTCTCGCAGGAGTCAGGGAGGCAGATAAGTAACATATCACGAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29597712 73 -  71996105 TGGGGAATAGGTCCAGGCCCTTTTTATGGCTCTCGCAGGAGTCAGGGAGGCAGATAAGTAACCTATCATGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     290565 73 -    735854 TGGGGAATAGGTCCAGGCCCTTTTTATGGCTCTCACAGGAGTCAGGGAAGCAGATAAGTAACATATCACGAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     236026 73 -   1829203 TGGGGAATAGGTCCAGGCCCTTTTTATGGCTCTTGGAGGAGTCAGGGAGGCAGATAAGTAACATATCACGAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30425361 73 + 171630274 tgtggaataggtccaggccctctttatggttctcacagtggtcagggaggcaggtaagtaacatatcacaaag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           240468 73 +    515838 TGTGGAATAGGTCCAGGCCCTCTTTATGGCTCTCATAGTGGTCAGGGAGGCAGATAAGTAACATATCACAAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     869779 73 -   1771730 TGTGGAATAGGTCCAGGCCCTCTTTATGGCTCTCACAGTGGTCAGGGAGGCAGAGAAGTAACATAGCTTGAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     364989 73 -    383796 TGTGGAATAGGTCCAGGCCCTCTTTATGGCTCTCACAGTGGTCAGGGAGGCAGATAAGTAACATATCAAGAAG
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     132450 73 -   1411461 TTGGGCATAAGTCCAGGTCCCCTCTGTGGCTCTCACAGGAGTCAGGGTGGCAGGCAAGTAGCACATGATGAAG
i proCoq1.NW_012149775v1   I 85 C 0
s otoGar3.GL873550           283003 67 +  18854210 ------ATAAGCCCAGGTCCCTTCTTGTTCTCTCACAGGAGTCAGGGAGACAGACAAGCAACATATGATGAAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26320029 55 +  26524999 ------------CAGGGGTGCCTCTGTGGCTCTTGCAGGGGTCATGCAGGCAGAGAA------CGTGATGGAG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               327382 302 + 123392446 I
e mm10.chr17               58080271 836 -  94987271 I
e dasNov3.JH580105            26833 2271 -     45298 I

a score=1402234.000000
s hg38.chr6_GL000254v2_alt  1451943 120 +   4827813 ACAGAATATAAGAAATGCCTGGGAGGAGGCATACTGATGCGTGGAAAGTACTCAGCCAGAAGCCTGGCACTAGAAGGGCCCAGGGATTGT---TG----GCATGTATGAGTCACAGTTCCATTTCAG
s panTro5.chr6             30321309 120 + 175400573 ACAGAATGTAAGAAATGCCTGGGAGGAGGCATACTGATGCGTGGAAAGTACTCAGCCAGAAGCCTGGCACTAGAAGGGCCCAGGGATTGT---TG----GCATGTATGAGTCACAGTTCCATTTCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30555765 120 + 173848474 ACAGAATGTAAGAAATGCCTGGGAGGAGGCATACTGATGCGTGGAAAGTACTCAGCCAGAAGCCTGGCACTAGAAGGGCCCAGGGATTGT---TG----GCATGTATGAGTCACAGTTCCATTTCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     262745 120 +   2037526 ACAGAATGTAAGAAATGCCTGGGAGGAGGCATACTGATGCGTGGAAAGTACTCAGCCAGAAGCCTGGCACTAGAAGGGCCCAGGGATTGT---TG----GCATGTATGAGTCACAGTTCCATTTCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74929773 120 + 122973662 ACAGAATGTAAGAAATGCCTGGGAGGAGGCATACTGATGCATGGAAAGTACTCAGCCAGGAGCCTCGCACTTGAAGGGCCCAGGGATTGT---TG----GCATGTATGAGTCACAGTTCCATTTCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30809366 120 + 172585720 ACAGAATGTAAGAAATGCCTGGGAGGAGGTATACTGATGCATGGAAAGTGCTCAGCCAGGAGCCTGGCACTAGAAGGGCCCAGGAATTGT---TG----GCATGTACGAGTCATAGTTCCATTTCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30098849 120 - 170955103 ACAGAATGTAAGAAATGCCTGGGAGGAGGTATACTGATGCATGGAAAGTGCTCAGCCAGGAGCCTGGCGCTAGAAGGGCCCAGGAATTGT---TG----GCATGTACGAGTCATAGTTCCATTTCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     347693 120 +   1495729 ACAGAATGTAAGAAATGCCTGGGAGGAGGTATACTGATGCATGGAAAGTGCTCAGCCAGGAGCCTGGCGCTAGAAGGGCCCAGGAATTGT---TG----GCATGTACGAGTCATAGTTCCATTTCAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     445708 120 -    863181 ACAGAATGTAAGAAATGCCTGGGAGGAGGTATACTGATGCATGGAAAGTGCTCAGCCAGGAGCCTGGCGCTAGAAGGGCCCAGGAATTGT---TG----GCATGTACGAGTCATAGTTCCATTTCAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29597785 120 -  71996105 ACAGAATGTAAGAAATGCCTGGGAGGAGGTATACTGATGCATGGAAAGTGCTCAGCCAGGAGCCTGGCGCTAGAAGGGCCCAGGAATTGT---TG----GCATGTACGAGTCATAGTTCCATTTCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     290638 120 -    735854 ACAGAATGTAAGAAATGCCTGGGAGGAGGTATACTGATGCATGGAAAGTGCTCAGCCAGGAGCCTGGCGCTAGAAGGGCCCACGAATTGT---TG----GCATGTACGAGTCATAGTTCCATTTCAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     236099 120 -   1829203 ACAGAATGTAAGAAATGCCTGGGAGGAGGTATACTGATGCACGGAAAGTGCTCAGCCAGGAGCCTGGCGCTAGAAGGGCCCAGGAATTGT---TG----GCATGTACGAATCATAGTTCCATTTCAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30425434 120 + 171630274 acagaatataagaaatgcctgggaggAGACATACTGAGGCATGGAAAGTGCTCAGCCAGGAGCCTGGCATTAGAAGGGCCCAGGGATTAT---TG----ACACTTATGAGTCACAGTTCCTTTTCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           240541 107 +    515838 ATAGAATATAAGAAATGTCTGGGA-----------GAGGCATGGAAAGTGCTCAGCCAGGAGCCTGGCATTAGAAGGGCCCAGGGATTAC---TG----ACACATATAAGT--CAGTTCTGTTTCAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     869852 118 -   1771730 ACAGAATATAAGAAATGCCTGGGAGGAGACATACTGAGGCATGGAAAGTGCTCAGCCAGGAGCCTGGCATTAGAAGGGCCCAGGGATTAT---TG----ACATGTATGAGT--CAGTTCTGTTTCAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     365062 119 -    383796 ACAGAATATAAGAAATGCCTGGGAGGAGACATACTAAGGCATGG-AAGTGCTCAGCCAGGAGCCTGGCATTAGAAGGGCCCAGGGATTAT---TG----ACATGTATGAGTCACAGTTCCGTTTCAG
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     132523 124 -   1411461 ACAGGGTGTAAGAAATGTGTGAAAGGAAGCACAGTGATGCATGGAAAGTGCTCAGCAGAGAGCCTGGTATTTGAAGGACTCAGTGGTTGC---AGGCATGTATGTATGAGTCACCGTTCAGTTTCAG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           283070 112 +  18854210 CCAGGGTGTGAGAAATGTCTGGAAGGAAGCCCAGTGATGCATGGAAAGTGCTCAGCAGGGAGCCTAGCATTAGAAA--------GGTTAC---TG----GTGTGTAAGAGTCAAAGTTCAGTTTCAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58081107  84 -  94987271 ACGCAGCACGAGAAATTTCTGG--------ATATTGATGCTTTGGAAATACCCAGCATTCAGCCTGGCTTCTGGGAGGCCCAGGCAGTGT---CT--------------------------------
i mm10.chr17               I 836 C 0
s canFam3.chr35            26320084  88 +  26524999 -----------------------AAGGAACATA---------GGCAAGTCCTCAGCAGAGAACCTGACCTCCACAGGGCCCTGGGGTTGTTACTG----GCATGCAGGAATCA---GTCTAGTGCTG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               327382 302 + 123392446 I
e dasNov3.JH580105            26833 2271 -     45298 I

a score=352731.000000
s hg38.chr6_GL000254v2_alt  1452063 27 +   4827813 TGGAGTGAGCAGGGAGAGAATCTCCTG
s panTro5.chr6             30321429 27 + 175400573 TGGAGTGAGCAGGGAGAGAATCTCCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30555885 27 + 173848474 TGGAGTGAGCAGGGAGAGAATCTCCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     262865 27 +   2037526 TGGAGTGAGCAGGGAGAGAATCTCCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74929893 27 + 122973662 TGGAGTGAGCAGGGAGAGAATCTCCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30809486 27 + 172585720 TGGAATGAGCAGGGAGAGAATCTCCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30098969 27 - 170955103 TGGAATGAGCAGGGAGAGAATCTCCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     347813 27 +   1495729 TGGAATGAGCAGGGAGAGAATCTCCTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     445828 27 -    863181 TGGAATGAGCAGGGAGAGAATCTCCTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29597905 27 -  71996105 TGGAATGAGCAGGGAAAGAATCTCCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     290758 27 -    735854 TGGAATGAGCAGGGAGAGAATCTCCTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     236219 27 -   1829203 TGGAATGAGCATGGAGAGAATCTCCTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30425554 27 + 171630274 TGGAGTGAGCAGGGAGAGAATCTCCTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           240648 27 +    515838 TGGAGTGAGCAGGGAGAGAATCTCCTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     869970 27 -   1771730 TGGAGTGAGCAGGGAGAGAATCTCCTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     365181 27 -    383796 TGGAGTGAGCAGGGAGAGAATCTCCTA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     132647 27 -   1411461 TGGGGTAATGGGGGACAGAATCCCCTA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           283182 26 +  18854210 TGGAGTAATGGGGGG-AGAATTCCCTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58081191 20 -  94987271 ----GTGATGATGGAGAGAATCCC---
i mm10.chr17               C 0 C 0
s canFam3.chr35            26320172 23 +  26524999 TGGGGT--TCCAGAAGAG--TCCCCTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            29104 24 -     45298 TGGGGTG---GGGGGCAGAGTCCCCTG
i dasNov3.JH580105         I 2271 C 0
e micMur3.chr6               327382 302 + 123392446 I

a score=308280.000000
s hg38.chr6_GL000254v2_alt  1452090 23 +   4827813 GAAGTAGGTGA----ATAGAGAAAATA
s panTro5.chr6             30321456 23 + 175400573 GAAGTAGGTGA----ATAGAGAAAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30555912 23 + 173848474 GAAGTAGGTGA----ATAGAGAAAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     262892 23 +   2037526 GAAGCAGGTGA----ATAGAGAAAATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74929920 23 + 122973662 GAAGTAGGTGA----ATAGAGAAAATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30809513 23 + 172585720 GAAGTAGGTGA----CTAGAGAAAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30098996 23 - 170955103 GAAGTAGGTGA----CTAGAGAAAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     347840 23 +   1495729 GAAGTAGGTGA----CTAGAGAAAATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     445855 23 -    863181 GAAGTAGGTGA----CTAGAGAAAATA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29597932 23 -  71996105 GAAGTAGGTAA----CTAGAGAAAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     290785 23 -    735854 GAAGTAGGTGA----CTAGAGAAAATA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     236246 23 -   1829203 GAAGTAGGTGA----CTAGAGAAAATA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30425581 23 + 171630274 GAAGCAGGTGA----ATGGAGAAAATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           240675 23 +    515838 GAAGTAGGTGA----ATGGAGAAAATG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     869997 23 -   1771730 GAAGTAGATGA----ATGGAGGAAATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     365208 23 -    383796 GAAGTAGGTGA----ATGGAGAAAATA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               327684 23 + 123392446 gaagtaggtga----atggagaaggtg
i micMur3.chr6             I 302 I 1
s proCoq1.NW_012149775v1     132674 23 -   1411461 GAAGTAGGTGA----ATGGAGAAGGTG
i proCoq1.NW_012149775v1   C 0 I 1
s otoGar3.GL873550           283208 23 +  18854210 GAAGTAGGCTA----ATAAAGAAGGTG
i otoGar3.GL873550         C 0 I 279
s mm10.chr17               58081211 23 -  94987271 GAGGTCAGTGA----GCATAGGGGCTG
i mm10.chr17               C 0 I 1
s canFam3.chr35            26320195 22 +  26524999 GCGGTAGGTGGTGACCTGGAGA-----
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            29128 23 -     45298 GAGGTACCGGA----GCTGAGCGGCCA
i dasNov3.JH580105         C 0 C 0

a score=3422342.000000
s hg38.chr6_GL000254v2_alt  1452113 220 +   4827813 CAGCCTCTTCCTTACCTTTGAATTTTTTCAGGCTCCCTG---TGATGGAGTCGTGTCTTGATTTTGCTTCACTGAGTTTTTTCTCCAGTTCTAGAGGAACAGGGGTTGGGTTGAGAAACT--GAAACTCTTCACTTCTAGGAAGATGTGGTTGAGCTGGTTGGTGAGATCAGGGGATGAGGTGT-------GGGAGAAGGAGGAT--CTGAGATATGGGGTTGA--------G-AAATGAGGG
s panTro5.chr6             30321479 220 + 175400573 CAGCCTCTTCCTTACCTTTGAATTTTTTCAGGCTCCCTG---TGATGGAGTCATGTCTTGATTTTGCTTCACTGAGTTTTTTCTCCAGTTCCAGGGGAACAGGGGTTGGGTTGAGAAACT--GAAACTCTTCACTTCTAGGAAGATGTGGTTGAGCTGGTTGGTGAGATCAGGGGATGAGGTGT-------GGGAGAAGGAGGAT--CTGAGACATGGGGTTGA--------G-AAATGAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30555935 220 + 173848474 CAGCCTCTTCCGTACCTTTGAATTTTTTCAGGCTCCCTG---TGATGGAGTCATGTCTTGATTTTGCTTCACTGAGTTTTTTCTCCAGTTCCAGGGGAACAGGGGTTGGGTTGAGAAACT--GAAACTCTTCACTTCTAGGAAGATGTGGTTGAGCTGATTGGTGAGATCAGGGGATGAGGTGT-------GGGAGAAGGAGGAT--CTGAGACATGGGGTTGA--------G-AAATGAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     262915 220 +   2037526 CAGCCTCTTCCTTACCTTTGAATTTTTTCAGGCTCCCTG---TGATGGAGTCATGTCTTGATTTTGCTTCACTGAGTTTTTTCTCCAGTTCCAGAGGAACAGGGGTTGGGTTGAGAAACT--GAAACTCTTCACTTCTAGGAAGATGTGGTTGAGCTGGTTGGTGAGATCAGGGGATGAGGTGT-------GGGAGAAGGAGGAT--CTGAGACATGGGGTTGA--------G-AAATGAGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74929943 220 + 122973662 CAGCCTCTTCCTTACCTTTGAATTTTTTCAGGCTCCCTG---TGATGGAGTCATGTCTTGACTTTGCTTCACTGAGTTTTTTCTCCAGTTCCAGAGGAATAGGGGTTGGGTTGAGAAACT--GAAACTCTTCACTCCTAGGAAGATGTGGTTGAGCTGGTTGGTGAGATCAGGAGATGAGGTGT-------GGGAGAAGAAGGAT--CTGAGACATGGGACTGA--------G-AAATGAGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30809536 220 + 172585720 CAGCCTTTTCCTTACCTTTGAATTTTTTCATTCTCCATG---TGATGGAGTCATGTCTTGATTTTGCTTCACTGAGTTTTCTCTCCAGCTCCAGAGGAACAGGGGTTGGGTTGAGAAACT--GAAACTCTTCACTCCTAGGAAGATGTGGCTGAGGGGGGTGGTGAGATCAGGGGCTGAGGTGT-------GGGAGAAGGAGGAT--CTGAGACATGGGGTTGA--------G-AAATGAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099019 220 - 170955103 CAGCCTTTTCCTTACCTTTGAATTTTTTCATTCTCCCTG---TGATGGAGTCATGTCTTGATTTTGCTTCACTGAGTTTTCTCTCCAGCTCCAGAGGAACAGGGGTTGGTTTGAGAAACT--GAAACTCTTCACTCCTAGGAAGATGTGGCTGAGCGGGGTGGTGAGATCAGGGGCTGAGGTGT-------GGGAGAAGGAGGAT--CTGAGACATGGGGTTGA--------G-AAATGAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     347863 221 +   1495729 CAGCCTTTTCCTTACCTTTGAATTTTTTCATTCTCCCTG---TGATGGAGTCATGTCTTGATTTTGCTTCACTGAGTTTTCTCTCCAGCTCCAGAGGAACAGGGGTTGGTTTGAGAAACT--GAAACTCTTCACTCCTAGGAAGATGTGGCTGAGCGGGGTGGTGAGATCAGGGGCTGAGGTGT-------GGGAGAAGGAGGAT--CTGAGACATGGGGTTGA--------GAAAATGAGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     445878 220 -    863181 CAGCCTTTTCCTTACCTTTGCATTTTTTCATTCTCCCTG---TGATGGAGTCATGTCTTGATTTTGCTTCACTGAGTTTTCTCTCCAGCTCCAGAGGAACAGGGGTTGGGTTGAGAAACT--GAAACTCTTCACTCCTAGGAAGATGTGGCTGAGCTGGGTGGTGAGATCAGGGGATGAGGTGT-------GGGAGAAGGAGGAC--CTGAGACATGGGGTTGA--------G-AAATGAGGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29597955 220 -  71996105 CACCCTTTTCCTTACCTTTGCATTTTTTCAGGCTCCCTG---TGATGGAGTCATGTCTTGATTTTGCTTCACTGAGTTTTCTCTCCAGCTCCAGAGGAACAGGGGTTGGGTTGAGAAACT--GAAACTCTTCACTCGTAGGAAGATGTGGCTGAGCGGGGTGGTGAGATCAGGGGATGAGGTGT-------GGGAGAAGGAGGAC--CTGAGACATGGGGTTGA--------G-AAATGAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     290808 220 -    735854 CAGCCTTTTCCTTACCTTTGAATTTTTTCATTCTCCCTG---TGATGGAGTCATGTCTTGATTTTGCTTCACTGAGTTTTCTCTCCAGCTCCAGAGGAACAGGGGTTGGGTTGAGAAACT--GAAACTCTTCACTCCTAGGAAGATGTGGCTGAGCGGGGTGGTGAGATCAGGGGATGAGGTAT-------GGGAGAAGGAGGAC--CTGAGACATGGGGTTGA--------G-AAATGGGGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     236269 220 -   1829203 CAGCCTTTTCCTTACCTTTGAATTTTTTCAGGCTCCCTG---TGATGGAGTCATGTCTTGATTTTGCTTCACTGAGTTTTCTCTCCAGCTCCAGAGGAACAGGGGCTGGGTTGAGAAACT--GAAACTCTTCACTCCTAGGAAGATGTGGCTGAGCTGTGTGGTGAGATCAGGGGATGAGGTGT-------GGGAGAAGGAGGAT--CTGAGACATGGGGTTGA--------G-AAATGAGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30425604 218 + 171630274 CAGCCTCTTCCTCACCTTTTCATTGTTTGAGGCTATTGG---TGATGGAGTCATGTCTTG-TTTTGCTTCACTGAGTTTTCTCTCCAGCTCCAGAGGAACAGGGGTGGGCTTGAGAAACT--GAAACCCTTCATTCCTAGAAAGATGTGGCTGAGCTGGGTGGTGAGATCAGGGGATGAGGTCT-------GGGAGAAGGATGAT--CTGAGACA-GGGGCTGA--------G-AAATGAGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           240698 220 +    515838 CAGCCTCTTCCTTACCTTTTCATTGCTTCAGGCTCTCTG---TGACAGACTCATGTCTTGATTTTGCTTCACTGAGTTTTCTCTCCAGCTCCGGAGGAACAGGGGTTGGCTTGAGAAACT--GAAACCCTTCATTCCTAGGAAGATGTGGCTGAGCTGGGTGGTGAGATCAGGGGATAAGGTCT-------GGGAGAAGGAGGAT--CTGAGACATGGGGCTGA--------G-AAATGAGCG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     870020 220 -   1771730 CAGCCTCTTCCTTACCTTTTCATTGTTTCAGGCTCTCTG---TGATGGAGTCGTATCTTGATTTTGCTTCACTGAGTTTTCTCTCCAGCTCCAAAGGAACAGGGGTTGGCTTGAGAAACT--GAAATCCTTCACTCCTAGGAAGATGTGGCTGAGCTCAGTGGTGAGATCAGGGGATGAGGTCT-------GGGAGAAGGAGGAT--CTGAGATGTGGGGCTGA--------G-AAATGAGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     365231 220 -    383796 CAGCCTCTTCCTTACCTCTTCGTTGTTTCAGGCTCTCTG---TGATGGAGTCATGTCTTGATTTTGCTTCACTGAGTTTTCTCTCCAGCTCCAGAGGAACAGGGGTTGGCTTGAGAAACT--GAAACCCTTCACTCCTAGGAAGATGTGTCTGAGCTGGGTGGTGAGATCAGGGGATGAGGTCT-------GGGAGAAGGATGAT--CTGAGACATGGGGCTGA--------G-AAATGAGGG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               327708 220 + 123392446 CATCCTCTTCCTTACCTTTGAGTTTTTTCAGGCTCCCTG---TGATGGAGTCATGTCTTGATTTTGCTTCACTAAGTTTTTTCTCGAGGTCCAGATGAATAGGGATTGGGCTGAGAAATT--GAAACTCTTCACTCCTAGAGAGACATGGCTGAACTGAGTGGTGAGATCAGGGGATGGACTGT-------CAGGGAGGGAGGAT--CTGAGACATGGAGTTAA--------G-GGATGAGGG
i micMur3.chr6             I 1 I 29
s proCoq1.NW_012149775v1     132698 220 -   1411461 CAGCCTCTTCTTTATCTCTGAATTTTTTCAGGCTCCCTG---TGATGGAGTCATGTCTTGATTTTGCTTCACTGAGTTTTTTCTCGAGGTCCAGATGAACAGGGATTGGGCTGTGAAATT--GAAACTCTTCACTCCTAGAGAGACATGGCCGAGCTGAGTGGTGAGATCAGGGGATGAACTGT-------CAGGCAGGGAGGAT--CTGAGATATGGGGTTGA--------G-GGATGAGGG
i proCoq1.NW_012149775v1   I 1 C 0
s otoGar3.GL873550           283510 220 +  18854210 cAGCCTCTTCTTTACCTTTGAATCTTTTCAGGTTCCCTG---TAATGGAGTCATGTCTTGATTTTGCTTCACTGAGTTTTCTCACAAAGTCCAGAAAAACAGGAACTGGGCTGAGAAATT--GAAACTTTTCACTCCTAGGAAGACATGGTTGAGCTGAGTGGTGGGATAAGGGGATAGAGTGT-------GGGAGAGGGAGGAT--CTGAGACATGGGGTCGA--------G-GGATGAGGG
i otoGar3.GL873550         I 279 C 0
s mm10.chr17               58081235 202 -  94987271 CAG-CGATCCCTCACCTTTGAGTTCTGTCAGGGTTTTTA---TGATGGACTCATGCCTTGCTTTTGCTTCACTGCATTTTTTCTCCAGGTCCTCAGGAACTGGGTTTGGGTTGAGAAACT--GAAATTCCTTACCCCTGTGAAGATA-AGTTTATCTGAGTGTTACGTTCAGGGGGTAGAGGGT-------GGG-CAGGAAGGGC--CGGAGAT---GGGTT---------------------
i mm10.chr17               I 1 C 0
s canFam3.chr35            26320217 215 +  26524999 CAGTATTTGCCTGACCTTTGG-----TCCAGGTTCTCTGTAATGATGGAGTCAGGTTTTGA--TTGTTTCACTGAGTTTTTCTCCAGGCTTCAG-GGAACAGGGGATGGGCTGTGGAGTGAAAAAACCCTTCGCCTCCAGGAAG--GTGGCTGAGCTGGAGGGTGAGAT-GGGGGAGGGGGCGCTGTGCCAGGGAGACGGGGGGTGGGTGAGACG-GGGGTTGG--------G-GA-------
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            29151 220 -     45298 CAGCCGC--CCTTACCTCTGAACTTCTTTATGGCCTCTG---TGATGGAGTCGTGCCTGGACTTCCCGTCACTGAGCTTTTTCTCCAGGTCCGAGGAAACCGGGGTTGGGGTGAGAAACT--GAAAGCCTTCGCTCCTGGGAAGACAGGCCTGAGCTGGGAGGTGA-ATCAGGGA--GGGCTGT-------Ggggggcgtgg-----ctaggggctggggtggacgtcaaggg-cagtggggg
i dasNov3.JH580105         C 0 C 0

a score=116969.000000
s hg38.chr6_GL000254v2_alt  1452333 10 +   4827813 --------GATGAAGACC
s panTro5.chr6             30321699 10 + 175400573 --------GATGAAGACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556155 10 + 173848474 --------GATGAAGACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263135 10 +   2037526 --------GATGAAGACC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930163 10 + 122973662 --------GATGAAGACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30809756 10 + 172585720 --------GATGAAAACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099239 10 - 170955103 --------GATGAAAACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348084 10 +   1495729 --------GATGAAAACT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     446098 10 -    863181 --------GATGCAAACT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29598175 10 -  71996105 --------GATGAAAACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291028 10 -    735854 --------GATGAAAACT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     236489 10 -   1829203 --------GATGAAAACT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30425822 10 + 171630274 --------GATGAAGACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           240918 10 +    515838 --------GATGAAGACC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     870240 10 -   1771730 --------GATGAAGACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     365451 10 -    383796 --------GATGAAGACC
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     132918 10 -   1411461 --------CATGAAGACC
i proCoq1.NW_012149775v1   C 0 I 29
s otoGar3.GL873550           283730 10 +  18854210 --------CATGAATACT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26320432 10 +  26524999 --------GATGGGGGCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            29371 18 -     45298 gggccgtggctaggggct
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               327928 29 + 123392446 I
e mm10.chr17               58081437  0 -  94987271 C

a score=9062.000000
s hg38.chr6_GL000254v2_alt  1452343 4 +   4827813 TGGG
s panTro5.chr6             30321709 4 + 175400573 TGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556165 4 + 173848474 TGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263145 4 +   2037526 TGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930173 3 + 122973662 T-AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30809766 4 + 172585720 TGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099249 4 - 170955103 TGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348094 4 +   1495729 TGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     446108 4 -    863181 TGGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29598185 4 -  71996105 TGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291038 4 -    735854 TGGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     236499 4 -   1829203 TGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30425832 3 + 171630274 T-AG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           240928 3 +    515838 T-AG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     870250 3 -   1771730 T-AG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     365461 3 -    383796 T-AG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           283740 3 +  18854210 -TGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26320442 3 +  26524999 -AGG
i canFam3.chr35            C 0 I 33836
s dasNov3.JH580105            29389 2 -     45298 --gg
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               327928 29 + 123392446 I
e mm10.chr17               58081437 0 -  94987271 C
e proCoq1.NW_012149775v1     132928 29 -   1411461 I

a score=138773.000000
s hg38.chr6_GL000254v2_alt  1452347 13 +   4827813 GGTAGAActgaga
s panTro5.chr6             30321713 13 + 175400573 GGTAGAACTGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556169 13 + 173848474 GGTAGAActgaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263149 13 +   2037526 GGTAGAACTGAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930176 13 + 122973662 GGTAGAACTGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30809770 13 + 172585720 GGTAGgaccgaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099253 13 - 170955103 GGTAGgaccgaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348098 13 +   1495729 GGTAGgaccgaga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     446112 13 -    863181 GGTAGgaccaaga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29598189 13 -  71996105 GGTAGgactgaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291042 13 -    735854 GGTAGGACAGAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     236503 13 -   1829203 GGTAGgactgaga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30425835 13 + 171630274 GGTAGGATTggga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           240931 13 +    515838 GGTGGgaccggga
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     870253 13 -   1771730 GGTAGgaccggga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     365464 13 -    383796 GATAGgaccggga
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           283743 13 +  18854210 GGTAGGGTAGAGA
i otoGar3.GL873550         C 0 I 43
s dasNov3.JH580105            29391 13 -     45298 ggtagaggtgggg
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               327928 29 + 123392446 I
e mm10.chr17               58081437  0 -  94987271 C
e proCoq1.NW_012149775v1     132928 29 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I

a score=52151.000000
s hg38.chr6_GL000254v2_alt  1452360 6 +   4827813 gcggtg
s panTro5.chr6             30321726 6 + 175400573 gcggtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556182 6 + 173848474 gcggtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263162 6 +   2037526 gcggtg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930189 6 + 122973662 gtggtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30809783 6 + 172585720 gcggtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099266 6 - 170955103 gcggtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348111 6 +   1495729 gcggtg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     446125 6 -    863181 gcggtg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29598202 6 -  71996105 gtggtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291055 6 -    735854 gtggtg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     236516 6 -   1829203 gcagtg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30425848 6 + 171630274 gcagcg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           240944 6 +    515838 gcagca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     870266 6 -   1771730 gcagca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     365477 6 -    383796 gcagca
i aotNan1.NW_018496904v1   C 0 C 0
s dasNov3.JH580105            29404 6 -     45298 acagtg
i dasNov3.JH580105         C 0 I 1
e micMur3.chr6               327928 29 + 123392446 I
e mm10.chr17               58081437 0 -  94987271 C
e proCoq1.NW_012149775v1     132928 29 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e otoGar3.GL873550           283756 43 +  18854210 I

a score=254170.000000
s hg38.chr6_GL000254v2_alt  1452366 24 +   4827813 gatcacacctgtaatcccagcact
s panTro5.chr6             30321732 24 + 175400573 gctcacacctgtaatcccagcact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556188 24 + 173848474 gctcacacctgtaatcccagcact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263168 24 +   2037526 gctcacacctgtaatcccagcact
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930195 24 + 122973662 tctcacgcctgtaatcccagcact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30809789 24 + 172585720 gctcacgcctgtaatcccagcact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099272 24 - 170955103 gctcacgcctgtaatcccagcact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348117 24 +   1495729 gctcacgcctgtaatcccagcact
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     446131 24 -    863181 gctcacgcctgtaatcccagcact
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29598208 24 -  71996105 gctcacgcctgtaatcccagcact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291061 24 -    735854 gctcacgcctgtaatcccagcact
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     236522 24 -   1829203 gctcacgcctgtaatcccagcact
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30425854 24 + 171630274 gctcacacctgtaatcccagcact
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           240950 24 +    515838 gttcatgcctgtaatcctggcact
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     870272 24 -   1771730 gctcacgcctgtaatcccagcact
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     365483 24 -    383796 gctcatgcctgtaatcccagcact
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               327928 29 + 123392446 I
e mm10.chr17               58081437  0 -  94987271 C
e dasNov3.JH580105            29410  1 -     45298 I
e proCoq1.NW_012149775v1     132928 29 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e otoGar3.GL873550           283756 43 +  18854210 I

a score=287321.000000
s hg38.chr6_GL000254v2_alt  1452390 33 +   4827813 ttgggaggctgaggcgggtggatcacctgaggt
s panTro5.chr6             30321756 33 + 175400573 ttgggaggctgaggcgggtggatcacctgaggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556212 33 + 173848474 ttgggaggctgaggcgggtggatcacctgaggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263192 33 +   2037526 ttgggaggctgaggcgggtggatcacctgaggt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930219 33 + 122973662 ttgggaggccaacgtgggtggatcacctgaggt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30809813 32 + 172585720 ttgggaggccaagg-gggtggatcacctgaggt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099296 32 - 170955103 ttgggaggccaagg-gggtggatcacctgaggt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348141 32 +   1495729 ttgggaggccaagg-gggtggatcacctgaggt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     446155 33 -    863181 ttgggaggccaaggcgggtggatcacctgaggt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29598232 33 -  71996105 ttgggaggccaaggcgggtggatcacctgaggt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291085 33 -    735854 ttgggaggccaaggcgggtggatcacctgaggt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     236546 33 -   1829203 ttgggaggccaaggcgggtggatcacctgaggt
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           240974 33 +    515838 ttgggaggctgaggcgggtggatcacttgaggt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     870296 33 -   1771730 ttgggaagctgaggcgggtggatcacttgaggt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     365507 33 -    383796 ttgggaggctgaggcgggtggatcacttgaggt
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58081437  8 -  94987271 -------------------------CCTGAAGT
i mm10.chr17               C 0 C 0
e micMur3.chr6               327928 29 + 123392446 I
e dasNov3.JH580105            29410  1 -     45298 I
e proCoq1.NW_012149775v1     132928 29 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e otoGar3.GL873550           283756 43 +  18854210 I
e calJac3.chr4             30425878  0 + 171630274 C

a score=84080.000000
s hg38.chr6_GL000254v2_alt  1452423 9 +   4827813 caggagttc
s panTro5.chr6             30321789 9 + 175400573 caggagttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556245 9 + 173848474 caggagttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263225 9 +   2037526 caggagttc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930252 9 + 122973662 caggagttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30809845 9 + 172585720 caggagttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099328 9 - 170955103 caggagttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348173 9 +   1495729 caggagttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     446188 9 -    863181 caggagttc
i cerAty1.NW_012002535v1   C 0 I 650
s chlSab2.chr17            29598265 9 -  71996105 caggagttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291118 9 -    735854 caggagttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     236579 9 -   1829203 caggagttt
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           241007 9 +    515838 caggagttc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     870329 9 -   1771730 caggagttc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     365540 9 -    383796 caggagttc
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               327928 29 + 123392446 I
e mm10.chr17               58081445 0 -  94987271 C
e dasNov3.JH580105            29410 1 -     45298 I
e proCoq1.NW_012149775v1     132928 29 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e otoGar3.GL873550           283756 43 +  18854210 I
e calJac3.chr4             30425878 0 + 171630274 C

a score=814159.000000
s hg38.chr6_GL000254v2_alt  1452432 93 +   4827813 aagactagcctggccaacatggtaaaacccggtctctactaaaaatatgaaaattag-ccaggcttggtggcaagcgcctgtagtctcagctac
s panTro5.chr6             30321798 93 + 175400573 gagactagcctggccaacatggtaaaacccggtctctactaaaaatatgaaaattag-ccaggcttggtggcaagcgcctgtagtctcagctac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556254 93 + 173848474 gagactagcctggccaacatggtgaaacccggtctctactaaaaatatgaaaattag-ccaggcttggtggcaagcgcctgtagtctcagctac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263234 94 +   2037526 gagactagcctggccaacatggtaaaacccggtctctactaaaaatatgaaaattagcccaggcttggtggcaagcgcctgtagtctcagctac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930261 93 + 122973662 gagactagcctggccaacatggtaaaacctggtatctactaaaaatacgaaaattag-ccaggcttggtggcaagtgcctgtagtctcagctac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30809854 93 + 172585720 gagactagccttaccaacatggtgaaacccggtctctactaaaaatacgaaaattat-ccaggcttggtggcaagcacctgtagtctcagctac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099337 93 - 170955103 gagactagcctgaccaacatggtgaaacccggtctctactaaaaatacgaaaattag-ccaggcttggtggcaagcacctgtagtctcagctac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348182 93 +   1495729 gagactagcctgaccaacatggtgaaacccggtctctacaaaaaatacgaaaattag-ccacgcttggtggcaagcacctgtagtctcagctac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     446847 93 -    863181 gagactagcctgaccaacatggtgaaacccggtctctactaaaaatatgaaaattag-ccaggcttggtggcaagcgcctgtagtctcagctac
i cerAty1.NW_012002535v1   I 650 C 0
s chlSab2.chr17            29598274 93 -  71996105 aagactagcctgaccaacatggtgaaacctggtctctactaaaaatacgaaaattag-ccaggcttggtggcaagcgcttgtagtctcagctac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291127 93 -    735854 gagactagcctgaccaacatggtgaaacccggtctctactaaaaatacgaaaattag-ccaggcttggtggcaagcgcctgtagtctcagctac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     236588 93 -   1829203 gagactagcctgaccaacatggtgaaacccggtctctactaaaaatatgaaaaatag-ccaggcttggtggcaagcgcctgtagtctcagctac
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           241016 93 +    515838 gagactagcctggccaacatggtaaaacctcatctctactaaagatacaaaaattat-ctaggcttggtggcaagtgcctgtagtctcagctac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     870338 93 -   1771730 gagactagcttggccaacatggtaaaacctcatctctactaaagatacaaaaattat-tcaggcttggtggcaagtgcctgtagtctcagctat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     365549 92 -    383796 gagactagcccggccaacacggtaaaacctcatctctactaaagatacaaaaattat-ccaggcttggtggcaagtgcttgtagtct-agttac
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               327928 29 + 123392446 I
e mm10.chr17               58081445  0 -  94987271 C
e dasNov3.JH580105            29410  1 -     45298 I
e proCoq1.NW_012149775v1     132928 29 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e otoGar3.GL873550           283756 43 +  18854210 I
e calJac3.chr4             30425878  0 + 171630274 C

a score=33840.000000
s hg38.chr6_GL000254v2_alt  1452525 3 +   4827813 ttg
s panTro5.chr6             30321891 3 + 175400573 ttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556347 3 + 173848474 ttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263328 3 +   2037526 ttg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930354 3 + 122973662 ttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30809947 3 + 172585720 ttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099430 3 - 170955103 ttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348275 3 +   1495729 ttg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     446940 3 -    863181 ttg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29598367 3 -  71996105 ttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291220 3 -    735854 ttg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     236681 3 -   1829203 ttg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30425878 3 + 171630274 ttg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           241109 3 +    515838 ttg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     870431 3 -   1771730 ttg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     365641 3 -    383796 ttg
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               327928 29 + 123392446 I
e mm10.chr17               58081445 0 -  94987271 C
e dasNov3.JH580105            29410 1 -     45298 I
e proCoq1.NW_012149775v1     132928 29 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e otoGar3.GL873550           283756 43 +  18854210 I

a score=1137815.000000
s hg38.chr6_GL000254v2_alt  1452528 145 +   4827813 ggaggctgaggcaggagaatcacttgaacctgggagacaaaggttgcagtgagctgagattgcaccactgcactccagcctgagcaacaagagc-aaagctccatctcaaaaaaa----aaaaaaaaaaaaaa--gaaGACCTGGCGGTTAA
s panTro5.chr6             30321894 147 + 175400573 ggaggctgaggcaggagaatcacttgaacctgggagacaaaggttgcagtgagctgagattgcaccactgcactccagcctgagcaacaagaac-aaagctccatctcaaaaaaa----aaaaaaaaaaaaaaaagaaGACCTGGCGGTTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556350 140 + 173848474 ggaggctgaggcaggagaatcacttgaacctgggagacaaaggttgcagtgagctgagattgcaccactgcactccagcctgagcaacaagaac-aaagctccatctcacacaca----aaaaaaaaa-------gaaGACCTGGCGGTTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263331 143 +   2037526 ggaggctaaggcaggagaatcacttgaacctgggagacaaaggttgcagtgagctgagattgcaccactgcactccagcctgagcaacaagagc-aaagctccatctcaacaaaa----aaaaaaaaaaaa----gaaGACCTGGCGGTTAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930357 142 + 122973662 ggaggctgaggcaggagaatcacttgaacctgggagacaaaggttgcagtgagctgagattttgccactgcactccagcctgagcaacaagagcaaaagcgccatctcaaaaaaa----aaaaaaaaaa------aaaGACCTGGGGGTTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30809950 147 + 172585720 ggaggctgaggcaggagaatcacttgaacctgggagacgaaggttgtagtgagctgagattgtgccactgcactccagcctgagcaacaagagc-aaagctccatctaaaaaaca----aaacaaacaaacaaacaaaaaCCTGAGGGTTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099433 147 - 170955103 ggaggctgaggcaggagaatcacttgaacctgggagacgaaggttgtagtgagctgagattgtgccactgcactccagcctgagcaacaagagc-aaagctccatctaaaaaaca----aaacaaacaaacaaacaaaaaCCTGAGGGTTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348278 151 +   1495729 ggaggctgaggcaggagaatcacttgaacctgggagacgaaggttgtagtgagctgagattgtgccactgcactccagcctgagcaacaagagc-aaagctccatctaaaaaacaaaacaaacaaacaaacaaacaaaAACCTGAGGGTTAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     446943 147 -    863181 ggaggctgaggcaggagaatcacttgaacctgggagacgaaggttgtagtgagctgagattgcgccactgcactccagcctgagcaacaagagc-aaagctccatctaaaaaaca----aaacaaacaaacaaacaaaaaCCTGGGGGTTAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29598370 147 -  71996105 ggaggctgaggtaggagaatcacttgaacctgggagacgaaggttgcagtgagctgagattccatcactgcactccagcctgagcaacaagagc-aaagctccatctaaaaaaca----aaacaaacaaacaaacaaaaaCCTGGGGGTTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291223 147 -    735854 ggaggctgaggcaggagaatcacttgaacctgggagacgaaggttgtagtgagctgagattgcgccactgcactccagcctgagcaacaagagc-aaagctccatctaaaaaaca----aaacaaacaaacaaacaaaaaCCTGGGGGTTAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     236684 151 -   1829203 ggaggctgaggcaggagaatcacttgaacctgggagacaaaggttgcagtgagctgagattgcaccactgcactccagcctgagcaacaagagc-aaagctccatctaaaaaacaaaacaaacaagcaaacaaacaaaACCCTGGGGGTTAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30425881 122 + 171630274 ggaggctgaggtaggagaatcacttgaactcaagaaacggaggttgcagtgagctgagattgtgtcactctactctagcctgggcaacaaaaga-aaaactccgtctaaaaaaaa----aaa-------------------CTGGG------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           241112 132 +    515838 ggaggttaaggcaggagaatcacttgaactcaagagacggaggttgcagtgagctgagattgtgccactgtactctatcctgggcaacaaaaga-aaaactccgtcaaaaaaaaa----aaa--aaaa-------aCAGACCTGGG------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     870434 126 -   1771730 ggaggttgaggcaggagaatcacttgaactcaagagacaggggttgcagtgagctgagattgtgccactgtacgctagcctgggcaacaaaaga-aaaactccgtctaaaaaaaa----aaC---------------AGACCTGGG------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     365644 134 -    383796 ggaagttgaggcaggggaatcacttgaactccagagacggaggttgcagtgagctgagattgtgccactgtactctagcctgggcaacaaaaga-aaaactccttctgaaaaaaa----aaaaaaaaa-------aaaGACCTGGG------
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58081445  41 -  94987271 GGAGGCAGAG--------------------TGAAAAATATAGAGT-CAATGAGCTGAGTTTT------------------------------------------------------------------------------------------
i mm10.chr17               C 0 C 0
e micMur3.chr6               327928  29 + 123392446 I
e dasNov3.JH580105            29410   1 -     45298 I
e proCoq1.NW_012149775v1     132928  29 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e otoGar3.GL873550           283756  43 +  18854210 I

a score=7397.000000
s hg38.chr6_GL000254v2_alt  1452673 1 +   4827813 G
s panTro5.chr6             30322041 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556490 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263474 1 +   2037526 G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930499 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810097 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099580 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348429 1 +   1495729 G
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447090 1 -    863181 G
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29598517 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291370 1 -    735854 G
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     236835 1 -   1829203 G
i colAng1.NW_012115577v1   C 0 C 0
s micMur3.chr6               327957 1 + 123392446 g
i micMur3.chr6             I 29 C 0
s mm10.chr17               58081486 1 -  94987271 A
i mm10.chr17               C 0 C 0
e dasNov3.JH580105            29410 1 -     45298 I
e proCoq1.NW_012149775v1     132928 29 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e saiBol1.JH378341           241244 0 +    515838 C
e otoGar3.GL873550           283756 43 +  18854210 I
e aotNan1.NW_018496904v1     365778 0 -    383796 C
e cebCap1.NW_016107755v1     870560 0 -   1771730 C
e calJac3.chr4             30426003 0 + 171630274 C

a score=107380.000000
s hg38.chr6_GL000254v2_alt  1452674 12 +   4827813 GGATAGTGAGCT
s panTro5.chr6             30322042 12 + 175400573 GGATAGTGAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556491 12 + 173848474 GGATAGTGAGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263475 12 +   2037526 GGATAGTGAGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930500 12 + 122973662 GGATAGTGAGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810098 12 + 172585720 GGATAGTGAGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099581 12 - 170955103 GGATAGTGAGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348430 12 +   1495729 GGATAGTGAGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447091 12 -    863181 GGATAGTGAGCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29598518 12 -  71996105 GGATAGTGAGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291371 12 -    735854 GGATAGTGAGCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     236836 12 -   1829203 GGATAGTGAGCT
i colAng1.NW_012115577v1   C 0 C 0
s micMur3.chr6               327958 12 + 123392446 ggatagtgagcc
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     132957 12 -   1411461 GGATAGTGAGCT
i proCoq1.NW_012149775v1   I 29 C 0
s mm10.chr17               58081487 12 -  94987271 GAATATGGGACT
i mm10.chr17               C 0 C 0
e dasNov3.JH580105            29410  1 -     45298 I
e canFam3.chr35            26320445 33836 +  26524999 I
e saiBol1.JH378341           241244  0 +    515838 C
e otoGar3.GL873550           283756 43 +  18854210 I
e aotNan1.NW_018496904v1     365778  0 -    383796 C
e cebCap1.NW_016107755v1     870560  0 -   1771730 C
e calJac3.chr4             30426003  0 + 171630274 C

a score=197999.000000
s hg38.chr6_GL000254v2_alt  1452686 20 +   4827813 GGGAGTCAGAAAGTCAGGGC
s panTro5.chr6             30322054 20 + 175400573 GGGAGTCAGAAAGTCAGGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556503 20 + 173848474 GGGAGTCAGAAAGTCAGGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263487 20 +   2037526 GGGAGTCAGAAAGTCAGGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930512 20 + 122973662 AGGAGTCAGAAAGCCAGGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810110 20 + 172585720 GGGAGTCAGAAGGCCAGGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099593 20 - 170955103 GGGAGTCAGAAGGCCAGGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348442 20 +   1495729 GGGAGTCAGAAGGCCAGGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447103 20 -    863181 GGGAGTCCGAAGGCCAGGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29598530 20 -  71996105 GGGAGTCCGAAGGCCAGGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291383 20 -    735854 GGGAGTCCGAAGGCCAGGGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     236848 20 -   1829203 GGGAGTTAGAAGGCCAGGGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426003 11 + 171630274 --------GAAGTCCA-GGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           241244 12 +    515838 --------GAGGGCCAGGGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     870560 12 -   1771730 --------Gagggccagggc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     365778 12 -    383796 --------GAAGGCCAGGGC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               327970 20 + 123392446 gggagttgggaggccagggc
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     132969 20 -   1411461 GGGATTTGGGAGGCCAGGGC
i proCoq1.NW_012149775v1   C 0 C 0
s mm10.chr17               58081499 15 -  94987271 GAG-----TGAGATCAGACC
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            29411 20 -     45298 gggggacagcaggccagggc
i dasNov3.JH580105         I 1 C 0
e canFam3.chr35            26320445 33836 +  26524999 I
e otoGar3.GL873550           283756 43 +  18854210 I

a score=2834953.000000
s hg38.chr6_GL000254v2_alt  1452706 227 +   4827813 TAGGGATATGGGGCAGGA-GTGAGGTAGGGCATAGGGAgata--tggaaatgaagatgggagatggagacagag---aggagGG-AAAAAAACAGGGTCAGGGAGACAGAGTAGGGGACCCAGGAGCTATTCAGTTGAGCAAG---GGGGCATTCAGGAAATAGTAGAATCTGTGCTGAAGAAG-----GAGGAAGGCTGAGAAAACAGCTGGTTTCTTTA-ACAACCAACC-ACTTGC---TAATA
s panTro5.chr6             30322074 227 + 175400573 TAGGGATATGGGGCAGGA-GTGAGGTAGGGCATAGGGAgata--tggaaatgaagatgggagatggagacagag---aggagGG-AAAAAAACAGGATCAGGGAGACAGAGTAGGGGACCCAGGAGCTATTCAGTTGAGCAAG---GGGGCATTCAGGAAATAGTAGAATCTGTGCTGAAGAAG-----GAGGAAGCCTGAGAAAACAGCTGGTTTCTTTA-ACAACCAACC-ACGTGC---TAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556523 227 + 173848474 TAGGGATATGGGGCAGGA-GTGAGGTAGGGCATAGGGAgata--tggaaatgaagatgggagatggagacagag---aggagGG-AAAAAAACAGGGTCAGGGAGACAGAGTAGGGGACCCAGGAGCTATTCAGTTGAGCAAG---GGGGCATTCAGGAAATAGTAGAATCTGTGCTGAAGAAG-----GAGGAAGCCTGAGAAAACAGCTGGTTTCTTTA-ACAACCAACC-ACATGC---TAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263507 227 +   2037526 TAGGGATATGGGGCAGGA-GTGAGGTAGGGCATAGGGAgata--tggaaatgaagatgggagatggagacagag---aggagGG-AAAAAAACAGGGTCAGGGAGACAGAGTAGGGGACCCAGGAGCTATTCAGTTGAGCAAG---GGGGCATTCAGGAAATAGTAGAATCTGTGCTGAAGAAG-----GAGGAAGCCTGAGAAAACGGCTGGTTTCTTTA-ACAACCAACC-ACGTGC---TAATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930532 230 + 122973662 TAGGGATATGGGGCAGGA-GTGAGGTAGGGCATAGGGAgata--tggaaatgaagatgggagatggagacagag---aggagaG-AAAAAAACAGAGTCAGGGAAACAGAGTAGGGGACCCAGGAGCTATTCAGTTGAGCAAG---GGGGCATTCAGGAAATAGTAGAATCTGTGCTGAAGAAG-----GAGGAAGCCTGAGAAAACAGTCGGTTTCTTTA-ACAACCAACC-ACATGCTAATAATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810130 227 + 172585720 CAGGGATATGGGGCAGGA-GTGAGGTAGGGCATAGGGAgata--tggaaatgaagatgggagatggagacagag---aggagag-aaaaaaacagggtcagggagacagagTAGGGGACCCCGGAGCTATTCATTTGAGCAAG---GGGGCATTCAGGAAATAATAGAATCTGTACTGAAGAAG-----CAGGAAGCCTGAGAAAACAGTTGATTTCTTTA-ACAACCAACC-ATGTGC---TAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099613 227 - 170955103 CAGGGATATGGGGCAGGA-GTGAGGTAGGGCATagggagata--tagaaatgaagatgggagatggagacagag---aggagag-aaaaaaacagggtcagggagacagagTAGGGGACCCCGGAGCTATTCATTTGAGCAAG---GGGGCATTCAGGAAATAATAGAATCTGTACTGAAGAAG-----CAGGAAGCCTGAGAAAACAGTTGATTTCTTTA-ACAACCAACC-ATGTGC---TAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348462 227 +   1495729 CAGGGATATGGGGCAGGA-GTGAGGTAGGGCATAGGGAgata--tggaaatgaagatgggagatggagacagag---aggagag-aaaaaaacagggtcagggagacagagTAGGGGACCCCGGAGCTATTCATTTGAGCAAG---GGGGCATTCAGGAAATAATAGAATCTGTACTGAAGAAG-----CAGGAAGCCTGAGAAAACAGTTGATTTCTTTA-ACAACCAACC-ATGTGC---TAATA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447123 227 -    863181 TAgggatacgggacagga-gtgaggtagggcatagggagata--tggaaatgaagatgggagatggagacagag---aggagaG-AAAAAAACAGGGTCAGGGTGACAGAGTAGGGGACCCAAGAGCTGTTCAGTTGAGCAAG---GGGGCATTCAGGAAATAGTAGAATATGTGCTGAAGCAG-----CAGGAAGCCTGAGAAAACAGTTGATTTCTTTA-ACAACCAACC-ACGTGC---TAATA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29598550 227 -  71996105 TAgggatacgggacagga-gtgaggtagggcatagggagata--tggaaatgaagatgggagatggagacagag---aggagaG-AAAAAAACAGGGTCAGGGAGACAGAGTAGGGGACCCAAGAGCTATTCAGTTGAGCAAG---GGGGCATTCAGGAAATAGTAGAATCTGTGCTGAAGAAG-----CAGGAAGCCTGAGAAAACAGTTGATTTCTTTA-ACAACCGACC-ACGTGC---TAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291403 227 -    735854 TAgggatacgggacagga-gtgaggtagggcatagggagata--tggaaatgaagatgggagatggagccagag---aggagaG-AAAAAAACAGGGTCAGGGTGACAGAGTAGGGGACCCAAGAGCTGTTCAGTTGAGCAAG---GAGGCATTCAGGAAATAGTAGAATATGTGCTGAAGCAG-----CAGGAAGCCTGAGAAAACAGTTGATTTCTTTA-ACAACCAACC-ACGTGC---TAATA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     236868 227 -   1829203 TAGGGATACGGGGCAGGA-GTGAGGTAGGGCATAGGGAgata--tggaaatgaagatgggagatggagacagag---aggagaG-AAAAAAACAGGGTCAGGAAGACAGAGTAGGGGACTCAGGAGCTATTCAGTTGAGCTAG---GGGGCATTCAGGAAATAGTAGAATCTGTGCTGAAGAAG-----CAGGAAGCCTGAGAAAACAGTTGGTTTCTTTA-ACAACCAACC-ATGTGC---TAATA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426014 220 + 171630274 TAGGGATATGGGGCAGGA-GTGAAGTAGGACATGAGGAGATATACGGAAATGAAGATAAGAAATGGAGACAGAG---GAGAG---GAAAAAACAGGATCAGGGAGACAGAGTAGG-------GGAGCTATTCAGTTGAGCAAG---GGGGCATTCAGGAAATAGGAGAATCTGGGTTGAAGAAG-----CAGGAAGCCTGAGAAAACAGTTGGTTTCTTTA-ACAATCAACC-ACCTGC---TAATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           241256 230 +    515838 TAGGGATATGAGGCAGGA-ATAAGGTAGGACATAGGGAGATATGTGGAAATGAAGATGAGAGATGGAGACAGAG---AAGAGAGAAAAAAAACAGGGTCAGGGAGACAGAGTAGGGGACCCAGGAGCTATTCAGTTGAGCGAG---GGGGCATTCAGGAAATAGGAGAATCTGTGTTGAAGAAG-----CAGGAAGCCTGAGAAAACAGTTGGTTACTTTA-ACAACCAACC-ACCTGC---TAATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     870572 229 -   1771730 tagggatatgaggcagga-ataaggtaggacatagggAGATATATGGAAATGAAGGTGAGAGATGGAGACAGAG---AGGAGAG-GAAAAAATGGGGTCAGGGAGACAGAGTAGGGGTCCCAGGAGCTATTCAGTTGAGCAAG---GGGGCATTCAGGAAATAGGAGAATCTGTGTTGAAGAAG-----CAGGAAGCCTGAGAAAACAGCTGGTTTCTTTA-ACAACCAACC-ACCTGC---TAATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     365790 214 -    383796 TAGGGATATGAGGCAGGA-GTGAGGTAGGGCATAGTGAGATACatggaaatgaagatgagagatggagacagag---aggagaggggatAAAAGGGGTCAGGGAGACAGAGTAGGGGATCCAGGAGCTATTCAGTTGAGCAAG---AGGGCATTCAGGAAATAGGAGAATCTGTGTTGA---------------------AGAAAACAGTTGGTTTCTTTA-ACAACCAACC-ACCTGC---TAATA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               327990 229 + 123392446 tagggattcgggGCAAGAGGGGAGGTAAGGCATA-GCAgata--tggaaatgaagattgcagatggagacagaggcaaggagag-aagggaaa-ggagcagggagatggagtggGGGACCCATCAGCCATTCTGCTGGGCAAG----GGGAATGCAAGAAATCAGAGAATCTGTGCTGGAGAAT-----CAGGAAGCCCAAGGAAACAGCTGGTCTCTTTA-ACAACCAACCCACTTGC---TAATA
i micMur3.chr6             C 0 I 120
s proCoq1.NW_012149775v1     132989 228 -   1411461 TAGGGATTTGGGGCAGGA-GGGAGGTGAGGCATAGGGAGATA--TGGAAATGAAGATTGCAGATGGAG--AGAGGCAAGGAGAG-AGGGGAAAGGGAGCAGGGAGATGGAGTAGGGGACCCATAAGCCATTGTGCTGAGCAAG----GGGCATGCAGGAAATAGTAGACTCTGTGCTGGAGAAT-----CAGGAAGCCGGAGGAAACAGTTGGTCTCTTTA-ACAACCAACCCACTTGC---TAATA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           283799 195 +  18854210 --------------------------TAGGCATAGGGAGATA--TAGAAATGAAGATTGGAGATGAAGACAGAGGCAGGGAGCA-AGGGGAATGGGAACAGGGAGATGGAGTAGGGGACCCATGAGGCATGTGGCTAAGCAAG----GGGCATGCAGGAAAAAGGAGAATCTGTGCTGAATAAT-----CAGGAAGCTGGA-GAAACAGTTGGTTTCT----------AACCTACTTGC---TTATA
i otoGar3.GL873550         I 43 C 0
s mm10.chr17               58081514 180 -  94987271 --------------------------------TGAGGAGATA--TGGAAATGAAGATGGGAGATGGGTGCAGAG---AAGAGAG-AAGGCAAAGGGG--AGGGACGTAGAGTAGGAAACCCAGGACTCACTCATTTGA-TATG---AAGA-----AGGAAATGGGAAGGAGACTTCTGTAAAGC-----TGAG----TGGAAAAAACA-----TGCCTTTACCCAAGAGATC-ACATGC---TACTG
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            29431 181 -     45298 --tggagacg---------gtgaggaggggtgt-ggcaggtg--tggc--------------atgggggtcagc---gggaggg-------------cctgggaga-ggagtgggTGACCCAGGAGCA--------GGGCAGGGCAGGGGCATGCAGGAGCCAGGAG--------CTGAGGATTGCGCCCGGGAGGCTGGAGGAAGCAGCTCCCTCCGCGC-CAAGCCGCCC-CTCGGC---CAATG
i dasNov3.JH580105         C 0 C 0
e canFam3.chr35            26320445 33836 +  26524999 I

a score=422791.000000
s hg38.chr6_GL000254v2_alt  1452933 38 +   4827813 TGGTTGGCATAGGCATTCCCCGGCTGCAGCCTAAATGT
s panTro5.chr6             30322301 38 + 175400573 TGGTTGGCATAGGCATTCCCCGGCTGCAGCCTAAATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556750 38 + 173848474 TGGTTGGCATAGGCATTCCCCGGCTGCAGCCTAAATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263734 38 +   2037526 TGGTTGGCATAGGCATTCCCCAGCTGCAGCCTAAATGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930762 38 + 122973662 TGGTTGGCATAGGCCTTCCCCGGCTGCAGCCTAAATGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810357 38 + 172585720 TGGTTGGCACAGGCCTTCCCCGGCTGCAGCCTAAAAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099840 38 - 170955103 TGGTTGGCATAGGCCTTCCCCGGCTGCAGCCTAAATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348689 38 +   1495729 TGGTTGGCATAGGCCTTCCCCGGCTGCAGCCTAAATGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447350 38 -    863181 TGGTTGGCATAGGCCTTCCCTGGCTGCAGCCTAAATGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29598777 38 -  71996105 CGGTTGGCATTGGCCTTCCCCGGCTGCAGCCTAAATGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291630 38 -    735854 TGGTTGGCATAGGCCTTCCCTGGCTGCAGCCTAAATGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     237095 38 -   1829203 TGGTTGGCATAGGCCTTCCCCGGCTGCAGCCTAAATGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426234 38 + 171630274 TGGTTGGCCTAGGCCTTCCCCTGTTGCAGCCTAAATGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           241486 37 +    515838 TGGTTGGCCTA-CCTTTCCGCTGCTGCAGACTAAATGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     870801 37 -   1771730 TGGTTGGCCTA-GCCTTCCCCAGCTGTAGCCTAAATGT
i cebCap1.NW_016107755v1   C 0 I 9
s aotNan1.NW_018496904v1     366004 38 -    383796 TAGTTGGCCTAGGCCTTCCCCTGCTGCAGCCTAAATGT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     133217 37 -   1411461 TGCTCAGCTTAGGCCTCCCCGACCTGCA-CCTAAATGT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           283994 37 +  18854210 TGATCAGCTTAGGCCTCCTCCACCTACA-CTTAAGTAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58081694 36 -  94987271 TGGATAGCTT-GGTCTTCCCTATCT-CAGCCTACATAG
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            29612 30 -     45298 CGCTCGGTTTAGGCGTTCCCCACCCGTGAC--------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               328219 120 + 123392446 I
e canFam3.chr35            26320445 33836 +  26524999 I

a score=198184.000000
s hg38.chr6_GL000254v2_alt  1452971 18 +   4827813 ATGAATGCAGAGTTAGAG
s panTro5.chr6             30322339 18 + 175400573 ATGAATGCAAAGTTAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556788 18 + 173848474 ATGAATGCAAAGTTAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263772 18 +   2037526 ATGAATGCAAAGTTAGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930800 18 + 122973662 GTGAATGCAAAGTTGGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810395 18 + 172585720 GTGAATGCAAAGTTAGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099878 18 - 170955103 GTGAATGCAAAGTTAGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348727 18 +   1495729 GTGAATGCAAAGTTAGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447388 18 -    863181 GTGAATGCAAAGTTAGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29598815 18 -  71996105 GTGAATGCAAAGTTAGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291668 18 -    735854 GTGAATGCAAAGTTAGCG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     237133 18 -   1829203 GTGAATGCAAAGTTAGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426272 18 + 171630274 GTGACTGCAAAGTTAGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           241523 18 +    515838 CTAACTGCAAAGTTAGAG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     366042 18 -    383796 CTGACTGCAAAGTTAGAG
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     133254 18 -   1411461 GTGACTGCAAAGTTAGAG
i proCoq1.NW_012149775v1   C 0 I 64
s otoGar3.GL873550           284031 17 +  18854210 GTGACTACAAAGTTATA-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58081730 18 -  94987271 TTTATAGCCAAGTTATTG
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            29642 12 -     45298 ------GCGAAGTTGGAG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               328219 120 + 123392446 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=486402.000000
s hg38.chr6_GL000254v2_alt  1452989 61 +   4827813 GTGGGTGGGTATTTCTGAGAGAGGAATGTTGACTGCATTTGGATATACGCTGAGAATTGT--G
s panTro5.chr6             30322357 61 + 175400573 GTGGGTGGGTATTTCTGAGAGAGGAATGTTGACTGCATTTGGATATACGCTGAGAATTGT--A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556806 61 + 173848474 GTGGGTGGGTATTTCTGAGAGAGGAATGTTGACTGCATTTGGATATACGCTGAGAATTGT--A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263790 61 +   2037526 GTGGGTGGGTATTTCTGAGAGAGGAATGTTGACTGCATTTGGATATACGCTGAGAATTGT--A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930818 61 + 122973662 GTGGGTGGGTATTTCGGAGAGAGGAATGTTGACCGCATTTGGATATATGTTGAGAATTGT--A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810413 61 + 172585720 GTGGGTGGGTATTTCTGAGAGAGGAATGTTGACTGCATTTGGATACATGTTGAGAATTGT--A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099896 61 - 170955103 GTGGGTGGGTATTTCTGAGAGAGGAATGTTGACTGCATTTGGATACGTGTTGAGAATTGT--A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348745 61 +   1495729 GTGGGTGGGTATTTCTGAGAGAGGAATGTTGACTGCATTTGGATACGTGTTGAGAATTGT--A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447406 61 -    863181 GTGGGTGTGTATTTCTGAGAGAGGAATGTTGACTGCATTTGGATAGGTGTTGAGAATTGT--A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29598833 61 -  71996105 GTGGGTGGGTATTTCTAAGACAGGAATGTTGACTGCATTTGAATACGTGTTGAGAATTGT--A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291686 61 -    735854 GTGGGTGGGTATTTCTGAGAGAGGAATGTTGACTGCATTTGGATAGGTGTTGAGAATTGT--A
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     237151 61 -   1829203 GTGGGTGGGTATTTCTGAGAGAGGAATGTTGACTGCATTTGGATACATGTTGAGAATTGT--A
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426290 53 + 171630274 GTGGGTG----------AGAGAGCAATGTTGACTGCATTTGAATATATTTTGAGTATTGTACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           241541 53 +    515838 GTGGGTG----------AGAGAGCCATGTTGACTGCATTTGAGTATATTTTGAGTATTGTACA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     366060 53 -    383796 GTGGGTG----------AGAGAGCAATGTTGACTGCATTTGAATATATTTTGAGTATTGTACA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           284048 61 +  18854210 GTATGTGGTTATCTGTGAGGGAGGAATGTTGAGTGTGTCTGAATATATGCCAAGTGTTGT--G
i otoGar3.GL873550         C 0 I 361
s mm10.chr17               58081748 39 -  94987271 ---------------------GGGAATG-TGAACACACTTGGATCTATGTTGAATGTTGT--A
i mm10.chr17               C 0 I 2
s dasNov3.JH580105            29654 52 -     45298 ---CGTGGGCATTGCGGGGAGGAGGGCGGGGATCGC---TGGCTGCGAGCCCCACGCG-----
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               328219 120 + 123392446 I
e proCoq1.NW_012149775v1     133272 64 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=116218.000000
s hg38.chr6_GL000254v2_alt  1453050 11 +   4827813 TGTGGATGAAT
s panTro5.chr6             30322418 11 + 175400573 TGTGGATGAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556867 11 + 173848474 TGTGGATGAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263851 11 +   2037526 TGTGGATGAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930879 11 + 122973662 TGTGGATGAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810474 11 + 172585720 CGTGGATGAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099957 11 - 170955103 CGTGGATGAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348806 11 +   1495729 CGTGGATGAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447467 11 -    863181 TGTGGATGAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29598894 10 -  71996105 TGTGGATG-AT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291747 11 -    735854 TGTGGATGAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     237212 11 -   1829203 TGTGGATGAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426343 11 + 171630274 TGTGGATGAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           241594 11 +    515838 TGTGGATGAAT
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     366113 11 -    383796 TGTGGATGAAT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           284470 11 +  18854210 TATGCATGAAT
i otoGar3.GL873550         I 361 C 0
s mm10.chr17               58081789 11 -  94987271 TGTGAGTGAAG
i mm10.chr17               I 2 C 0
s dasNov3.JH580105            29706 11 -     45298 TCTGCAGGGGT
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               328219 120 + 123392446 I
e proCoq1.NW_012149775v1     133272 64 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=82212.000000
s hg38.chr6_GL000254v2_alt  1453061 6 +   4827813 CAGTAG
s panTro5.chr6             30322429 6 + 175400573 CAGTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556878 6 + 173848474 CAGTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263862 6 +   2037526 CAGTAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930890 6 + 122973662 CAGTAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810485 6 + 172585720 CAGTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099968 6 - 170955103 CAGTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348817 6 +   1495729 CAGTAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447478 6 -    863181 CAGTAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29598904 6 -  71996105 CAGTAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291758 6 -    735854 CAGTAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     237223 6 -   1829203 CAGTAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426354 6 + 171630274 CAGTAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           241605 6 +    515838 CAGTAG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     366124 6 -    383796 CAGTAG
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     133336 6 -   1411461 CAGTAG
i proCoq1.NW_012149775v1   I 64 C 0
s otoGar3.GL873550           284481 6 +  18854210 CAGTAA
i otoGar3.GL873550         C 0 I 6
s mm10.chr17               58081800 6 -  94987271 CAGAAA
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            29717 6 -     45298 CAGTCC
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               328219 120 + 123392446 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838 9 -   1771730 I

a score=1183947.000000
s hg38.chr6_GL000254v2_alt  1453067 86 +   4827813 GCAAAATACATTTGGGGTGGCCCATCATACCTGCACAAGACGACTTTGATATCCTAGAAGAGAA--------AGAGAAACAGCACAGCCTCAGC
s panTro5.chr6             30322435 86 + 175400573 GCAAAATACATTTGGGGTGGCCCATCATACCTGCACAAGACGACTTTGATATCCTAGAAGAGAA--------AGAGAAACAGCACAGCCTCAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556884 86 + 173848474 GCAAAATACATTTGGGGTGGCCCATCATACCTGCACAAGACGACTTTGATATCCTAGAAGAGAA--------AGAGAAATAGCACAGCCTCAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263868 86 +   2037526 GCAAAATACATTTGGGGTGGCCCATCATACCTGCACAGGACGACTTTGATATCCTAGAAGAGAA--------AGAGAAACAGCACAGCCTCAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930896 86 + 122973662 GCAAAATGCATTTGGGGTGGCCCATCATACCTGCACAAGACGACTTTGATATCCTAGAAGAGAA--------AGAGAAACAGCACAGCCTCAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810491 86 + 172585720 GCAAAATATATTTGGGGTGGCCCATCATACCTGCACAAGACGACTTTGATATCCTAGAAGAGAA--------AGAGAAATAGCACAGCCTCAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30099974 85 - 170955103 GCAAAATATATTTGGGGTGGCCCATCATACCTGCACAAGACG-CTTTGATATCCTAGAAGAGAA--------AGAGAAACAGCACAGCCTCAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348823 85 +   1495729 GCAAAATATATTTGGGGTGGCCCATCATACCTGCACAAGACG-CTTTGATATCCTAGAAGAGAA--------AGAGAAACAGCACAGCCTCAGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447484 86 -    863181 GCAAAATACATTTGGGGTGGCCCATCATACCTGCGCAAGACGACTTTGATATCCTAGAAGAGAA--------AGAGAAACAGCACAGCCTCAGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29598910 86 -  71996105 GCAAAATACATTTGGGGTGGCCCATGATACCTGCGCAAGATGACTTTGATATCCTAGAAGAGAA--------AGAGAAACAGCACAGCCTCAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291764 86 -    735854 ACAAAATACATTTGGGGTGGCCCATCATACCTGCGCAAGACGACTTTGATATCCTAGAAGAGAA--------AGAGAAACAGCACAGCCTCAGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     237229 86 -   1829203 GCAAAATACATTTGGGGTGGCCCATCATACCTGCGCAAGACGACTTTAATATCCTAGAAGAGAA--------AGAGAAACAGCACAGCCTCAGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426360 84 + 171630274 GCAAAATACATTTGGGGTGGCCCATCATACCTGCACAAGACAACTCTGATATCCTAGAAGAGAG----------AGAAACAGCACAGCTTCAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           241611 84 +    515838 GCAAAATACATTTGGGGTGGCCCATCATACCTGCTCAAGACAACTCTGATATCCCAGAAGAGAA----------AGAAAAAGCACAGCCTCAGC
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     366130 84 -    383796 GCAAAATACATTTGGGGTGGCCCATCATACCTGCACAAGGCAACTCTGATATCCTAGAAGAGAA----------AGAAACAGCACAGCCTCAGC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               328339 86 + 123392446 GCAAAATGCATTTGGCGTGGCCATCCACACCTGCACAAGACAACTTTGATGCCCTAGAAGAGGA--------AGAGGAACAGCACAACCTTAGC
i micMur3.chr6             I 120 C 0
s proCoq1.NW_012149775v1     133342 86 -   1411461 GCAAAATGCATTTGGGATGGCCCATCACACCCGCACAAGACAACTTTGATGCCCTAGAAGAGGA--------AGAGGAACAGTACAACCTCAGC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           284493 86 +  18854210 GCAAAATGCATTTGGGACTGCCCATAACACCTGCACAAGATGACTTTGATGTCCTAGAAGAGAA--------AGAGAAACAGCACAACCTCAGC
i otoGar3.GL873550         I 6 C 0
s mm10.chr17               58081806 93 -  94987271 CCACAGTGCACTGGGGAT-GCCCATCATACCTGCTCAAGGCGTCTTTAATGTCCTGGAAGagaaagaaagaaagaaagaaagaaCCACATCAGA
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            29723 76 -     45298 ----GAAGCGCCCCGGGCTGC----AGTACCTGCAGAGGACGACCTTGATGCCCTAGAGGAGAA----------GGGAAGAGCGCGGCCTCAGC
i dasNov3.JH580105         C 0 I 638
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=311900.000000
s hg38.chr6_GL000254v2_alt  1453153 24 +   4827813 ACTTGGCTGATTCCCAGGAGCCAA
s panTro5.chr6             30322521 24 + 175400573 GCTTGGCTGATTCCCAGGAGCCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556970 24 + 173848474 ACTTGGCTGATTCCCAGGAGCCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263954 24 +   2037526 ACTTGGCTGATTCCCAGGAGCCAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74930982 24 + 122973662 ACTTGGCTGATTCCCAGGGGCCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810577 24 + 172585720 ACTTGGCTGATTCCCAGGAGCCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100059 24 - 170955103 ACTTGGCCGATTCCCGGGAGCCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348908 24 +   1495729 ACTTGGCCGATTCCCGGGAGCCAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447570 24 -    863181 ACTTGGCTGATTCCCAGGAGCCAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29598996 24 -  71996105 ACTTGGCCGATTCCCAGGAGCCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291850 24 -    735854 ACTTGGCTGATTCCCAGGAGCCAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     237315 24 -   1829203 ACTTGGCTGATTCCCAGGAGCCAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426444 24 + 171630274 ACTTGGCTGATTCCCAGGAGCCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           241695 24 +    515838 ACTTGGCTGATTCCCAGGAGCCAA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     366214 24 -    383796 ACTTGGCTGATTCCCAGGAGCCAA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               328425 24 + 123392446 ACTTGGCCTATTTGCAGGCGCTAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     133428 24 -   1411461 ACTTGGCCTATTCGCAGGCGCTAA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           284579 24 +  18854210 ACTTGCCCTATTCACAGGAGCTAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58081899 24 -  94987271 GCTCACCTGAGTCACAGGAAGCAA
i mm10.chr17               C 0 I 83
e dasNov3.JH580105            29799 638 -     45298 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=34015.000000
s hg38.chr6_GL000254v2_alt  1453177 4 +   4827813 GGAG
s panTro5.chr6             30322545 4 + 175400573 GGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556994 4 + 173848474 GGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263978 4 +   2037526 GGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931006 4 + 122973662 GGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810601 4 + 172585720 GGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100083 4 - 170955103 GCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348932 4 +   1495729 GCAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447594 4 -    863181 GGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29599020 4 -  71996105 GGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291874 4 -    735854 GGAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     237339 4 -   1829203 GGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426468 4 + 171630274 AGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           241719 4 +    515838 AAAG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     366238 4 -    383796 AAAG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               328449 4 + 123392446 GGCA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     133452 4 -   1411461 GGTG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           284603 4 +  18854210 GGAG
i otoGar3.GL873550         C 0 I 11
e mm10.chr17               58081923 83 -  94987271 I
e dasNov3.JH580105            29799 638 -     45298 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838 9 -   1771730 I

a score=121964.000000
s hg38.chr6_GL000254v2_alt  1453181 14 +   4827813 GA-GATACAGAGCCT
s panTro5.chr6             30322549 14 + 175400573 GA-GATACAGAGCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30556998 14 + 173848474 GA-GATACAGAGCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263982 14 +   2037526 GA-GATACAGAGCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931010 14 + 122973662 GA-GGTACAGAGCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810605 14 + 172585720 GA-GGTTCAGAGCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100087 14 - 170955103 GA-GGTTCAGAGCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348936 14 +   1495729 GA-GGTTCAGAGCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447598 14 -    863181 GA-GGTTCACAGCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29599024 14 -  71996105 GA-GGTTCAGAGCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291878 14 -    735854 GA-GGTTCACAGCCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     237343 14 -   1829203 GA-GGTTCAGAGCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426472 14 + 171630274 GA-GGTGCAGACCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           241723 14 +    515838 GA-AGTGCAGACCCT
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     366242 14 -    383796 GA-GGTACAGACCCT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               328453 12 + 123392446 ---GGTGCAGACCCT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     133456 15 -   1411461 GGTGGTGCAGGCCCT
i proCoq1.NW_012149775v1   C 0 C 0
e mm10.chr17               58081923 83 -  94987271 I
e dasNov3.JH580105            29799 638 -     45298 I
e canFam3.chr35            26320445 33836 +  26524999 I
e otoGar3.GL873550           284607 11 +  18854210 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=522958.000000
s hg38.chr6_GL000254v2_alt  1453195 43 +   4827813 GCTGGGTGTGGGGCAGAGCAGGAGGAGTAAGAACCCCTCCAAG---------
s panTro5.chr6             30322563 43 + 175400573 GCTGGGTGTGGGGCAGAGCAGGAGGAGTAAGAACCCCTCCAAG---------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30557012 43 + 173848474 GCTGGGTGTGGGGCAGAGCAGGAGGAGTAAGAACCCCTCCAAG---------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     263996 43 +   2037526 GCTGGGTGTGGGGCAGAGCAGGAGGAGTAAGAACCCCTCCAAG---------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931024 43 + 122973662 GCTGGGTGTGGGGCAGAGCCGGAGGAGTAAGAACCCCTCCAAG---------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810619 43 + 172585720 GCCGGATGTGGGGCAGAGCAGGAAGAGTGAGAACCCCTCTAAG---------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100101 43 - 170955103 GCCGGATGTGGGGCAGAGCAGGAAGAGTGAGAACCCCTCCAAG---------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348950 43 +   1495729 GCCGGATGTGGGGCAGAGCAGGAAGAGTGAGAACCCCTCCAAG---------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447612 43 -    863181 GCCAGATGTGGGGCAGAGCAGGAGGAATAAGAACCCCTCTAAG---------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29599038 43 -  71996105 GCCGGATGTGGGGCAGAGCAGGAGGAGTGAGAACCCCTCCAAG---------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291892 43 -    735854 GCCAGATGTGGGGCAGAGCAGGAGGAATAAGAACCCCTCTAAG---------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     237357 43 -   1829203 GCCGGATGTGGGGCAGAGCAGGAGGAGTGAGAACCCCTCCAAG---------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426486 43 + 171630274 GCTGGGTGTGGGGCAGAGCAGGAGGAGTAAGAAcccctcccat---------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           241737 43 +    515838 GCTGGGTGCGGAGCAGAGCAGGAGGAGTAAGAACCCCTCCAAT---------
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     366256 43 -    383796 GCTGGGTGTGGGGCAGAGCAGGAGGAGTAAGAACCCCTCCAAT---------
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               328465 43 + 123392446 GCTGGGTGTGGAGCAGAGCAGGAAAAGTGCGAACACCTCTAAG---------
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     133471 43 -   1411461 GCTGGGTGTGGAGCAGAGCAGGAAGAGTGAGAAAACCTCCAAG---------
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           284618 52 +  18854210 GCTGGGTGTGGAGCAGAGCAGGAAGAGTGAGGACACCTCCAAGTtctctctc
i otoGar3.GL873550         I 11 C 0
e mm10.chr17               58081923 83 -  94987271 I
e dasNov3.JH580105            29799 638 -     45298 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=80883.000000
s hg38.chr6_GL000254v2_alt  1453238 5 +   4827813 TCTCT
s panTro5.chr6             30322606 5 + 175400573 TCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30557055 5 + 173848474 TCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     264039 5 +   2037526 TCTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931067 5 + 122973662 TCTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810662 5 + 172585720 TCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100144 5 - 170955103 TCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348993 5 +   1495729 TCTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447655 5 -    863181 TCTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29599081 5 -  71996105 TCTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291935 5 -    735854 TCTCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     237400 5 -   1829203 TCTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426529 5 + 171630274 tctct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           241780 5 +    515838 TCTCT
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     366299 5 -    383796 TCTCT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               328508 5 + 123392446 tctct
i micMur3.chr6             C 0 I 115
s proCoq1.NW_012149775v1     133514 5 -   1411461 tctct
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           284670 5 +  18854210 tctct
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58082006 5 -  94987271 tctct
i mm10.chr17               I 83 C 0
e dasNov3.JH580105            29799 638 -     45298 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838 9 -   1771730 I

a score=51508.000000
s hg38.chr6_GL000254v2_alt  1453243 5 +   4827813 CTTAC
s panTro5.chr6             30322611 5 + 175400573 CTTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30557060 5 + 173848474 CTTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     264044 5 +   2037526 CTTAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931072 5 + 122973662 CTTAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810667 5 + 172585720 CTTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100149 5 - 170955103 CTTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     348998 5 +   1495729 CTTAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447660 5 -    863181 CTTAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29599086 5 -  71996105 CTTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291940 5 -    735854 CTTAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     237405 5 -   1829203 CTTAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426534 5 + 171630274 ctcgc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           241785 5 +    515838 CTCGC
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     366304 5 -    383796 CTCGC
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     133519 5 -   1411461 ctctc
i proCoq1.NW_012149775v1   C 0 I 50
s otoGar3.GL873550           284675 5 +  18854210 ctttc
i otoGar3.GL873550         C 0 I 18
s mm10.chr17               58082011 5 -  94987271 cttcc
i mm10.chr17               C 0 C 0
e micMur3.chr6               328513 115 + 123392446 I
e dasNov3.JH580105            29799 638 -     45298 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838 9 -   1771730 I

a score=207803.000000
s hg38.chr6_GL000254v2_alt  1453248 23 +   4827813 -CCCATCCTCCTCCCCTCT-----CCCCA-------------------------------------------------------------
s panTro5.chr6             30322616 23 + 175400573 -CCCATCCTCCTCCCCTCT-----CCCCA-------------------------------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30557065 23 + 173848474 -CCCATCCTCCTCCCCTCT-----CCCCA-------------------------------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     264049 23 +   2037526 -CCCATCCTCCTCCCCTCT-----CCCCA-------------------------------------------------------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931077 23 + 122973662 -CCCATCCTCCTCCCCTCT-----CCCCA-------------------------------------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810672 23 + 172585720 -CCCATCCTCCTCCCCTCT-----CCTCA-------------------------------------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100154 23 - 170955103 -CCCATCCTCCTCCCCTCT-----CCTCA-------------------------------------------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     349003 23 +   1495729 -CCCATCCTCCTCCCCTCT-----CCTCA-------------------------------------------------------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447665 23 -    863181 -CCCATCCTCCTCCCCTCT-----CCTCA-------------------------------------------------------------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29599091 23 -  71996105 -CCCATCCTCCTCCCCTCT-----CCTCA-------------------------------------------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291945 23 -    735854 -CCCATCCTCCTCCCCTCT-----CCTCA-------------------------------------------------------------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     237410 23 -   1829203 -CCCATCCTCCTCCCCTCT-----CCTCA-------------------------------------------------------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426539 23 + 171630274 -cccatcctcatcccctct-----cctcc-------------------------------------------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           241790 23 +    515838 -CCCATCCTCCTCCCCGCT-----CCTCC-------------------------------------------------------------
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     366309 23 -    383796 -CCCATTCTCCTCCCCTCT-----CCTCA-------------------------------------------------------------
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           284698 28 +  18854210 -CCCATTCTCTTTCTCCCTGTACACCCCA-------------------------------------------------------------
i otoGar3.GL873550         I 18 I 7
s mm10.chr17               58082016 85 -  94987271 tccctccttcctttctcct-----cctccttcttctcctcctccttttcctccttctcctctccctccttcccctcctcccccttctcct
i mm10.chr17               C 0 C 0
e micMur3.chr6               328513 115 + 123392446 I
e dasNov3.JH580105            29799 638 -     45298 I
e proCoq1.NW_012149775v1     133524 50 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=636523.000000
s hg38.chr6_GL000254v2_alt  1453271  67 +   4827813 -----CCACG--------------AAGGGCTTCT----------------------------------------------CCAAGAAGCA---------CTGCTCTGCCAGTAAGCAGAAAAGTGTTTTGACCTCAAGAAG
s panTro5.chr6             30322639  67 + 175400573 -----CCACG--------------AAGGGCTTCT----------------------------------------------CCAAGAAGCA---------CTGCTCTGCCAGTAAGCAGAAAACTGTTTTGACCTCAAGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30557088  67 + 173848474 -----CCACG--------------AAGGGCTTCT----------------------------------------------CCAAGAAGCA---------CTGCTCTGCCAGTAAGCAGAAAAGTGTTTTGACCTCAAGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     264072  67 +   2037526 -----CCACG--------------AAGGGCTTCT----------------------------------------------CCAAGAAGCA---------CTGCTCTGCCAGTAAGCAGAAAAGTGTTTTGACCTCAAGAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931100  67 + 122973662 -----CCACG--------------GAGGGCTTCT----------------------------------------------CCAAGAAGCA---------CTGCTCTGCCAGTAAGCAGAAAAGTGTTTTGACCTCAAGAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810695  65 + 172585720 -----CCACG--------------GAGGGCTTCT----------------------------------------------CCAAGAAGCA--------CCTGCTCTGCCAGTAAGCAG---AGTATTTCAACCTCAAGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100177  65 - 170955103 -----CCACG--------------GAGGGCTTCT----------------------------------------------CCAAGAAGCA--------CCTGCTCTGCCAGTAAGCAG---AGTATTTCAACCTCAAGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     349026  65 +   1495729 -----CCACG--------------GAGGGCTTCT----------------------------------------------CCAAGAAGCA--------CCTGCTCTGCCAGTAAGCAG---AGTATTTCAACCTCAAGAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447688  65 -    863181 -----CCACG--------------GAGGGCTTCT----------------------------------------------CCAAGAAGCA--------CCTGCTCTGCCAGTAAGCAG---AATATTTCAACCTCAAGAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29599114  65 -  71996105 -----CCACG--------------GAGGGCTTCT----------------------------------------------CCAAGAAGCA--------CCTGCTCTGCCAGTAAGCAG---AGTATTTCGACCTCAAGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     291968  65 -    735854 -----CCACG--------------GAGGGCTTCT----------------------------------------------CCAAGAAGCA--------CCTGCTCTGCCAGTAAGCAG---AATATTTCAACTTCAAGAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     237433  64 -   1829203 -----CCAC---------------GAGGGCTTCT----------------------------------------------CCAAGAAGCA--------CCTGCTCTGCCAGTAAGCAG---AGTATTTCGACCTCAAGAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426562  68 + 171630274 -----ccACG--------------GAGGGCTTCT----------------------------------------------CCAAGAATCA--------CCTGCTCTGCCAGTAAGCAGGAAAAGGTTTAGACCTCAAGAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           241813  68 +    515838 -----CCACG--------------GAGGGCTTCT----------------------------------------------CCAACAAGCT--------CCTGCTCTGCCAGTAAGCAGGAAAGGGTTTAGACCTCAAGAAG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     366332  68 -    383796 -----CCACG--------------GAGGGCTTCT----------------------------------------------CCAAGAAGCA--------CCTGCTCTGCCAGTAAACAGGAAAGGGTTTAGACCTCAAGAAG
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     133574  68 -   1411461 -----CCATG--------------AAGGGCTCTT----------------------------------------------CCAAGAAGCA--------CCTGATCTGCCAGTAAGCAGGAAAATGGTTAGACCTCAAGAAG
i proCoq1.NW_012149775v1   I 50 C 0
s otoGar3.GL873550           284733  82 +  18854210 -----CCCTGCCCACCTGCCACACAAGTGCTCTT----------------------------------------------CCAAGAAGGA--------TCTGATCTTCCAGTAGGCAGGAAAATGGTTAGACCTCAAGAAG
i otoGar3.GL873550         I 7 C 0
s mm10.chr17               58082101 121 -  94987271 ccactccatt--------------ctggacctctgtctctcttcctcctcctcctccATCCCATTCTGACCACCCCCCCCCCAAAAAAAAAAAAAACTCCTGAT------ATAGACAGGACAGTGTTTAAACATCAAAAGG
i mm10.chr17               C 0 C 0
e micMur3.chr6               328513 115 + 123392446 I
e dasNov3.JH580105            29799 638 -     45298 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838   9 -   1771730 I

a score=1548663.000000
s hg38.chr6_GL000254v2_alt  1453338 118 +   4827813 AACTGAGTGA--------AGAAGAGAAGAGTGAG----ATTTAGAAGATGAA----------------TTTGGCTCTGAGACTGAAC-AAGGGAGCC-TGCTAGCCAG-GGCAGGAGAAAGGCTAGAATGGCTTTGCATGATCTTTCTT
s panTro5.chr6             30322706 119 + 175400573 AACTGAGTGA--------AGAAGAGAAGAGTGAG----ATTTAGAAGATGAA----------------TTTGGCTCTGAGACTGAAC-AAGGGAGCCCTGCTAGCCAG-GGCAGGAGAAAGGCTAGAATGGCTTTGCATGATCTTTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30557155 119 + 173848474 AACTGAGTGA--------AGAAGAGAAGAGTGAG----ATTTAGAAGATGAA----------------TTTGGCTCTGAGACTGAAC-AAGGGAGCCCTGCTAGCCAG-GGCAGGAGAAAGGCTAGAATGGCTTTGCATGATCTTTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     264139 119 +   2037526 AACTGAGTGA--------AGAAGAGAAGAGTGAG----ATTTAGAAGATGAA----------------TTTGGCTCTGAGACTGAAC-AAGGGAGCCCTGCTAGCCAG-GGCAGGAGAAAGGCTAGAATGGCTTTGCATGATCTTTCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931167 119 + 122973662 AACTGAGTGA--------AGAAGAGAAGGGTAAG----ATTTAGAAGATGAA----------------TTTGGCTCTGAGACTGAAC-AGGGGAGCCCTGCTAGCCAG-GGCAGGAGAAAGGCTAGAATGGCTTTGCATGATCTTTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810760 119 + 172585720 AACTGAGTGA--------AGAAGAGAAGAGTGAG----ATTTAGAAGATTAA----------------TTTGGCTCTGAGACTGAAC-AGGGGAGCACTGCTAGCCAG-GGCAGGAGAAAGGCTAGAATGGCTTTGCATGATCTTTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100242 119 - 170955103 AACTGAGTGA--------AGAAGAGAAGAGTGAG----ATTTAGAAGATGAA----------------TTTGGCTCTGAGACTGAAC-AGGGGAGCACTGCTAGCCAG-GGCAGGAGAAAGGCTAGAATGGCTTTGCATGATCTTTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     349091 119 +   1495729 AACTGAGTGA--------AGAAGAGAAGAGTGAG----ATTTAGAAGATGAA----------------TTTGGCTCTGAGACTGAAC-AGGGGAGCACTGCTAGCCAG-GGCAGGAGAAAGGCTAGAATGGCTTTGCATGATCTTTCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447753 119 -    863181 AACTGAGTGA--------AGAAGAGAAGAGTGAG----ATTTAGAAGATGAA----------------TTTGGCTCTGAGACTGAAC-AGGGGAGCACTGCTAGCCAG-GGCAGGAGAAAGGCTAGAATGGCTTTGCATGATCTTTCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29599179 119 -  71996105 AACTGAGTGA--------AGAAGAGAAGGGTGAG----ATTTAGAAGATGAA----------------TTTGGCTCTGAGACTGAAC-AGGGGAGCACTGCTAGCCAG-GGCAGGAGAAAGGCTAGAATGGCTTTGCATGATCTTTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     292033 119 -    735854 AACTGAGTGA--------AGAAGAGAAGAGTGAG----ATTTAGAAGATGAA----------------TTTGGCTCTGAGACTGAAC-AGGGGAGCACTGCTAGCCAG-GGCAGGAGAAAGGCTAGAATGGCTTTGCATGATCTTTCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     237497 119 -   1829203 AACTGAGTGA--------AGAAGAGAAGAGTGAG----ATTTAGAAGATGAA----------------TTTGGCTCTGAAACTGAAC-AGGGGAGCACTGCTAGCCAG-GGCAGGAGAAAGGCTAGAATGGCTTTGCATGATCTTTCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426630 119 + 171630274 AACTGAGTGA--------AGAAGAGAAGAGTGAG----ATTTAGAAGATAAA----------------TTTGGCTCTGAGACTGAAC-AGGGGAGCCCTGCTAGCCAG-GGCAGGAGAAAGGCTAGAATGGCTTTGCATAATCTTTCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           241881 119 +    515838 AACTGAGTGA--------AGAAGAGAAGAGTGAG----ATTTAGAAGATGGA----------------TTTGGCTCTGAGACTGAAC-AGGGGAACCCTGCTAGCCAG-GGCAGGAGAAAGGCTAGAATGGCTTTGTATAATCTTTCTT
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     366400 119 -    383796 AACTGAGTGA--------AAAAGAGAAGAGTGAG----ATTTAGATGATGAA----------------TTTGGCTCTGAGACTGAAC-AGGGGAGCCCTGCTAGCCGG-GGCAGGAAAAAGGCTAGAATGGTTTTGCATGATCTTTCTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               328628 121 + 123392446 AACTGAGTGT--------AGAACAGAAGAGTGAG----ATTTGAAAAATGAA---------------TTTTGTCTCTGAGACTGAACTGGAGGAACCCTGCTAGCCAG-GACAGAAGAAAGGCTAGAATAGCTTCGTGTGATCCTTCTT
i micMur3.chr6             I 115 C 0
s proCoq1.NW_012149775v1     133642 121 -   1411461 AACTGAGTGT--------AGAAGAGAAGAGTGAG----ATTTGAAAAATGAA---------------TTTTGTCTCTGAGACTGAACTGGGGGAGCCCTGCTAGCCAG-GACAGAAGAAAGGCTAGAATGGCTTTGTGTGATCTTTCTT
i proCoq1.NW_012149775v1   C 0 I 419
s otoGar3.GL873550           284815 118 +  18854210 AACGGAG-----------AGAAGAGGAGACTGAG----ATTTGGAAGATGAA---------------TTTTTTCTCTGAGACTAAACTGGGGGAGCCATGCTAGCAAG-GACAGATGAAAGGCTAGAATGGCTTTGGGTGATCTTTCTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58082222 143 -  94987271 AACAGAGTGAGCAGAATGAGGAGAGAAGAAAGAGTAACATTTGGGACACAGATTTTTGTTTTTGTTTTTTTGCCTCTGGTACAGAAA-CAGGAAGCTCAGCTTGGCAGTGTCAGGATAAAGGATGGAGTGGCTCTCCATGGCTT-----
i mm10.chr17               C 0 C 0
e dasNov3.JH580105            29799 638 -     45298 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838   9 -   1771730 I

a score=45853.000000
s hg38.chr6_GL000254v2_alt  1453456 4 +   4827813 AAAA
s panTro5.chr6             30322825 4 + 175400573 AAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30557274 4 + 173848474 AAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     264258 4 +   2037526 AAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931286 4 + 122973662 AAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810879 4 + 172585720 AAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100361 4 - 170955103 AAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     349210 4 +   1495729 AAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447872 4 -    863181 AAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29599298 4 -  71996105 AAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     292152 4 -    735854 AAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     237616 4 -   1829203 AAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426749 4 + 171630274 AAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           242000 4 +    515838 AAAA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     366519 4 -    383796 AAAA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               328749 4 + 123392446 GAAA
i micMur3.chr6             C 0 I 22
s otoGar3.GL873550           284933 4 +  18854210 GAAA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58082365 0 -  94987271 C
e dasNov3.JH580105            29799 638 -     45298 I
e proCoq1.NW_012149775v1     133763 419 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838 9 -   1771730 I

a score=288081.000000
s hg38.chr6_GL000254v2_alt  1453460 33 +   4827813 TAAATAAATAGGTTTTTGAACCTGTGGGAGAAT
s panTro5.chr6             30322829 33 + 175400573 TAAATAAATAGGTTTTTGAACCTGTGGGAGAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30557278 33 + 173848474 TAAATAAATAGGTTTTTGAACCTGTGGGAGAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     264262 33 +   2037526 TAAATAAATAGGTTTTTGAACCTGTGGGAGAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931290 33 + 122973662 TAAATAAATAGGTTTTTGAACCTGTGGGAGAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810883 33 + 172585720 TAAATAAATAGGTTTTTGAACCTGTGGGAGAAT
i rheMac8.chr4             C 0 I 3
s macFas5.chr4             30100365 33 - 170955103 TAAATAAATAGGTTTTTGAACCTGTGGGAGAAT
i macFas5.chr4             C 0 I 3
s macNem1.NW_012012100v1     349214 33 +   1495729 TAAATAAATAGGTTTTTGAACCTGTGGGAGAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     447876 33 -    863181 TAAATAAATAGGTTTTTGAACCTGTGGGAGAAT
i cerAty1.NW_012002535v1   C 0 I 1137
s chlSab2.chr17            29599302 33 -  71996105 TAAATAAATAAGTTTTTGAACCTGTGGGAGAAT
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012107142v1     292156 33 -    735854 TAAATAAATAGGTTTTTGAACCTGTGGGAGAAT
i manLeu1.NW_012107142v1   C 0 I 3
s colAng1.NW_012115577v1     237620 33 -   1829203 TAAATAAATAGGTTTTTGAACCTGTGGGAGAAT
i colAng1.NW_012115577v1   C 0 I 3
s calJac3.chr4             30426753 33 + 171630274 GAAGTGAATGGGTTTTTGAAGCTATGGGAGAAT
i calJac3.chr4             C 0 I 3
s saiBol1.JH378341           242004 33 +    515838 GAAGTGAATGGGTTTTTGAAGCTATGGGAGAAT
i saiBol1.JH378341         C 0 I 3
s aotNan1.NW_018496904v1     366523 33 -    383796 GAAGCGAATGGCTTTTTGAAGCTATGGGAGAAT
i aotNan1.NW_018496904v1   C 0 I 3
s otoGar3.GL873550           284937 19 +  18854210 GAAAAAAATAGATTCTTGA--------------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               328753 22 + 123392446 I
e mm10.chr17               58082365  0 -  94987271 C
e dasNov3.JH580105            29799 638 -     45298 I
e proCoq1.NW_012149775v1     133763 419 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=534179.000000
s hg38.chr6_GL000254v2_alt  1453493 50 +   4827813 AGATGACTTGAGGAGGAATCATCTCAGC---TTGTTTTAAGCACCAGCTAGAC
s panTro5.chr6             30322862 50 + 175400573 AGATGACTTGAGGAGGAATCATCTCAGC---TTGTTTTAAGCACCACCTAGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30557311 50 + 173848474 AGATGACTTGAGGAGGAATCATCTCAGC---TTGTTTTAAGCACCAGCTAGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     264295 50 +   2037526 AGATGACTTGAGGAGGAATCATCTCAGC---TTGTTTTAAGCACCAGCTAGAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931323 50 + 122973662 AGATGACTTGAGGAGGGATCATCTCAGC---TTGTTTTAAGCACCAGCTAGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810919 50 + 172585720 AGATGACTTGAGGAGGGATCACCTCAGC---TTGTTTTAAGCACCAGCTGGAC
i rheMac8.chr4             I 3 C 0
s macFas5.chr4             30100401 50 - 170955103 AGATGACTTGAGGAGGGATCACCTCAGC---TTGTTTTAAGCACCAGCTGGAC
i macFas5.chr4             I 3 C 0
s macNem1.NW_012012100v1     349247 50 +   1495729 AGATGACTTGAGGAGGGATCACCTCAGC---TTGTTTTAAGCACCAGCTGGAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     449046 50 -    863181 AGATGACTTGAGGAGGGATCACCTCAGC---TTGTTTTAAGCACCAGCTGGAC
i cerAty1.NW_012002535v1   I 1137 C 0
s chlSab2.chr17            29599338 50 -  71996105 AGATGACTTGAGGACGGATCACCTCAGC---TTGTTTTAAGCACCAGCTGGAC
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012107142v1     292192 50 -    735854 AGATGACTTGAGGAGGGATCACCTCAGC---TTGTTTTAAGCACCAGCTGGAC
i manLeu1.NW_012107142v1   I 3 C 0
s colAng1.NW_012115577v1     237656 50 -   1829203 AGATGACTTGAGAAGGGATCACCTCGGC---TTGTTTTAAGCACCAGCTGGAC
i colAng1.NW_012115577v1   I 3 C 0
s calJac3.chr4             30426789 50 + 171630274 GGATGACTTGAGGAGGGATCATCTCAGC---TAGTTTCGAGCACCAGCTAGAC
i calJac3.chr4             I 3 C 0
s saiBol1.JH378341           242040 50 +    515838 AGATGGCTCGAGGAGGGATCATCTCAGC---TTGTTTTGAGCACCAGCTAGAC
i saiBol1.JH378341         I 3 C 0
s aotNan1.NW_018496904v1     366559 50 -    383796 AGATGGCTTGAGGAGGGATCATCTCAGC---TTGTTTCGAGCACCAGCCAGAC
i aotNan1.NW_018496904v1   I 3 C 0
s micMur3.chr6               328775 50 + 123392446 AGATGAATTCAGGAGGGATCATCTCAGG---TTATTCTGAGCACCAGCTAGAC
i micMur3.chr6             I 22 I 685
s otoGar3.GL873550           284956 53 +  18854210 AGATCAATTCAGGAGGGATCATCTCAGGATCTCATTTTAAGCACCAGCTAGAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58082365 26 -  94987271 ---------------------CCCCACT---TCTCTTTTCCCTCTAGCTC---
i mm10.chr17               C 0 C 0
e dasNov3.JH580105            29799 638 -     45298 I
e proCoq1.NW_012149775v1     133763 419 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=212980.000000
s hg38.chr6_GL000254v2_alt  1453543 23 +   4827813 Ttgcactgtccaatatggtagcc
s panTro5.chr6             30322912 23 + 175400573 ctgcactgtccaatatggtagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30557361 23 + 173848474 ctgcactgtccaatatggtagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     264345 23 +   2037526 ctgcactgtccaatatggtagcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931373 23 + 122973662 ctgcactgtccaatatggtagcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810969 23 + 172585720 ctgcactgtccaatacggtagcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100451 23 - 170955103 ctgcactgtccaatacggtagcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     349297 23 +   1495729 ctgcactgtccaatacggtagcc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     449096 23 -    863181 ctgcactgtccaatacggtagcc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29599388 23 -  71996105 ctgcactgtccaatacggtagcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     292242 23 -    735854 ctgcactgtccaatacggtagcc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     237706 23 -   1829203 ctgcactgtccaatacggtagcc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426839 19 + 171630274 ctgcactgtccaatacagt----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           242090 19 +    515838 ctgcactgtccaatacagt----
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     366609 19 -    383796 ctgcactgtccaatacaat----
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           285009 23 +  18854210 ctgcactgtccaatttagtagcc
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58082391 23 -  94987271 TGGCCCTGTTCACTCTGGCCCCC
i mm10.chr17               C 0 I 226
e micMur3.chr6               328825 685 + 123392446 I
e dasNov3.JH580105            29799 638 -     45298 I
e proCoq1.NW_012149775v1     133763 419 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=71841.000000
s hg38.chr6_GL000254v2_alt  1453566 10 +   4827813 accaaccaca
s panTro5.chr6             30322935 10 + 175400573 accaaccaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30557384 10 + 173848474 accaaccaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     264368 10 +   2037526 accaaccaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931396 10 + 122973662 accaaccaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30810992 10 + 172585720 accaaccaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100474 10 - 170955103 accaaccaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     349320 10 +   1495729 accaaccaca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     449119 10 -    863181 accaaccaca
i cerAty1.NW_012002535v1   C 0 I 298
s chlSab2.chr17            29599411 10 -  71996105 accaaccaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     292265 10 -    735854 accaaccaca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     237729 10 -   1829203 accaaccaca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426858  3 + 171630274 -------gca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           242109  3 +    515838 -------gca
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     366628  3 -    383796 -------gca
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           285032 10 +  18854210 accaactaca
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               328825 685 + 123392446 I
e mm10.chr17               58082414 226 -  94987271 I
e dasNov3.JH580105            29799 638 -     45298 I
e proCoq1.NW_012149775v1     133763 419 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=57489.000000
s hg38.chr6_GL000254v2_alt  1453576 8 +   4827813 tgtggcta
s panTro5.chr6             30322945 8 + 175400573 tgtggcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30557394 8 + 173848474 tgtggcga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     264378 8 +   2037526 tgtggcta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931406 8 + 122973662 tgtggcta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811002 8 + 172585720 catggctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100484 8 - 170955103 catggctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     349330 8 +   1495729 catggctg
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29599421 8 -  71996105 catggcta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     292275 8 -    735854 catggcta
i manLeu1.NW_012107142v1   C 0 M 940
s colAng1.NW_012115577v1     237739 8 -   1829203 catggcta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426861 8 + 171630274 tgtggcta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           242112 8 +    515838 tgtggcta
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     366631 8 -    383796 tgtggcta
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           285042 8 +  18854210 tgtagcta
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               328825 685 + 123392446 I
e mm10.chr17               58082414 226 -  94987271 I
e dasNov3.JH580105            29799 638 -     45298 I
e proCoq1.NW_012149775v1     133763 419 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838 9 -   1771730 I
e cerAty1.NW_012002535v1     449129 298 -    863181 I

a score=874819.000000
s hg38.chr6_GL000254v2_alt  1453584 162 +   4827813 ctgaacattggaaattgtggctagtgtgacaaagaactgaatttttaatttcatttttactaattcaaatttaaatt-aaaaatagaggccaggcacggtggttcacgcctgtaatcccagcactttgggaggctgaggtgggcagatcacttgaggtcagga
s panTro5.chr6             30322953 162 + 175400573 ctgaacattggaaattgtggctagtgtgacaaagaactgaatttttaatttgatttttactaattcaaatttaaatt-aaaaatagaggccaggcatggtggttcacgcctgtaatcccagcactttgggaggctgaggtgggcagatcacttgaggtcagga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30557402 162 + 173848474 ctgaacattggaaattgtggctagtgtgacaaagaactgaatttttaatttgatttttactaattcaaatttaaatt-aaaaatagaggccaggcatggtggttcacgcctgtaatcccagcactttgggaggctgaggtgggcagatcacttgaggtcagga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     264386 162 +   2037526 ctgaacattggaaattgtggctagtgtgacaaagaactgaatttttaatttgatttttactaattcaaatttaaatt-aaaaatagaggccaggcacggtggttcacgcctgtaatcccagcactttgggaggctgaggtgggcagatcacttgaggtcagga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931414 162 + 122973662 ctgaacattggaaattgtggctagtgtgacaaaggactgaatttttaatttgatttttactaattcaaatttaaatt-aaaaatagaggccgggcatggtggttcacgcctgtaatcccagcactttgggaggctgagatgggcagatcacctgaggtcagga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811010 123 + 172585720 tggaacattgggaattctgg---------------------------------------ctaattcaaatttaaatt-aaaaatagaatccaggcacggtggttcacgcctgtaatcccagcactttgggaggccgaggtgggcaaatcacctgaggtcagga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100492 123 - 170955103 tggaacattgggaattctgg---------------------------------------ctaattcaaatttaaatt-aaaaatagaatccgggcacggtggttcacgcctgtaatcccagcactttgggaggccgaggtgggcaaatcacctgaggtcagga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     349338 123 +   1495729 tggaacattgggaattctgg---------------------------------------ctaattcaaatttaaatt-aaaaatagaatccgggcacggtggttcacgcctgtaatcccagcactttgggaggccgaggtgggcaaatcacctgaggtcagga
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29599429 123 -  71996105 tggaacattgggaattctgg---------------------------------------ctaattcaaatttaaatt-aaaaatagaatccgggcacggtggttcacgcctgtaatcccagcactttgggaggctgaggtgggcaaatcacctgaggtcagga
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     237747 162 -   1829203 tggaacactggaaattctggctagtgtgacaaaggactgaatttttaatttgatttttactaattcaaatttaaatt-aaaaatagaatccgggcatggtggttcacgcctgtaatcccagcactttgggaggctgaggtgggcaaatcacctgaggtcagga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30426869 161 + 171630274 ctgaacacttgaaattgtggccagtg-gacaaagaactgaatttttaatttaatttttactaattcaaatttaaatt-aaaaatagaggctgggtgcagtggttcatgcctgtagtcccagcactttgggaggctgaggtgagcagattgcctgaggtcagga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           242120 161 +    515838 ctgaacacttgaaattgtggccagtg-gacaaagaactgaatttttaatttaatttttactaattcaaatttaaact-taaaatagaggctgggtgcagtggttcacacctgtagtcccagcactttgggagaccaaggtgggcagatcgcctgaggtcagaa
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     366639 162 -    383796 ctgaacacttgaaattgtggctagtg-gacaaagaactgaatttttaatttaatttttactaattcaaatttaaattaaaaaatagaagttggatgtggtggttcatgcctgtagtcccagcactttgggaggttgaggtgggcagatcgcctgaggtcagga
i aotNan1.NW_018496904v1   C 0 I 346
s otoGar3.GL873550           285050 135 +  18854210 ctgagcacttgcaa-tgcagctagtgcaacaaggaatcaattttttaatttaatcatcaccaatttaaatttaaaaa-ctgaagcagggtTAGGTGCAGTGGCTGA-GTTTGTGATCCTAGCTATTTGGGAGGCAGAG-------------------------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               328825 685 + 123392446 I
e mm10.chr17               58082414 226 -  94987271 I
e dasNov3.JH580105            29799 638 -     45298 I
e proCoq1.NW_012149775v1     133763 419 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838   9 -   1771730 I
e manLeu1.NW_012107142v1     292283 940 -    735854 M
e cerAty1.NW_012002535v1     449129 298 -    863181 I

a score=628668.000000
s hg38.chr6_GL000254v2_alt  1453746 133 +   4827813 gttcgagaccatcctggccaacatggtaaaaccccgtgtctgctaagaatacaaaaattagctgggcg-tggtggtggggacctgtaatcccagctacttggga-------------------cttgggcctaggaggcggaagttgtagtgt
s panTro5.chr6             30323115 133 + 175400573 gttcgagaccagcctggccaacatggtaaaaccccatgtctgctaagaatacaaaaattagctgggcg-tggtggtggggacctgtaatcccagctactcggga-------------------cttgggcctaggaggcggaagttgtaatga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30557564 133 + 173848474 gttcgagaccagcctggccaacatggtaaaaccccatgtctgctaagaatacaaaaattagctgggcg-tggtggtggggacctgtaatcccagctactcggga-------------------cttgggcctaggaggcggaagttgtaatga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     264548 133 +   2037526 gttcgagaccagcctggccaacatggtaaaaccccgtgtctgctaagaatacaaaaattagctgggca-tggtggtggagacctgtaatcccagctactcagga-------------------cttgggcctaggaggcagaagttgtaatga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931576 133 + 122973662 gttcgagaccagcctggccaacatggtaaaaccccacgtctgctaagaatacaaaaattagcctgggg-tggtggtggggacctgtaatcccagctactcggga-------------------cttgagcctaggaggtggaagttgcagaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811133 139 + 172585720 gttcgagaccagcctggccaacatggtgaaaccctgtgtctggtaagaatacaaaaattagcc--------------gggacctgtaatcccagctactcgggagactgaggcaggagaacagcttgagcctaggagacagaggttgcagtga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100615 139 - 170955103 gttcgagaccagcctggccaacatggtgaaaccccgtgtctggtaagaatacaaaaattagcc--------------aggacctgtaatcccagctactcgggagactgaggcaggagaccagcttgagcctaggagacagaggttgcagtga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     349461 139 +   1495729 gttcgagaccagcctggccaacatggtgaaaccccgtgtctggtaagaatacaaaaattagcc--------------aggacctgtaatcccagctactcgggagactgaggcaggagaccagcttgagcctaggagacagaggttgcagtga
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29599552 139 -  71996105 gttcgagaccagcctggccaacgtggtgaaaccccgtgtctgctaagaatacaaaaattagcc--------------gggacctgtaatcccagctactcgggagactgaggcaggagaaccgcttgagcctaggagacagaggttgcagtga
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     237909 139 -   1829203 gtttgagaccagcctggccaacatggtgaaaccccgtgtctgctaagaatacaaaaattagcc--------------gggacctgtaatcccagcaacttgggagactgaggcaggagaaccgcttgagcctaggagacagaagttgcagtga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30427030 153 + 171630274 gttcaagaccagcctgaccaacatggtgaaaccccatgtctattaagaatacaaaaattatcctggtgttggtggtgagcacctgtaatgccagctattaaagaggctgaagcaggagaatcacttgagctcaggaggtgaaggttacagtga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           242281 152 +    515838 gttcaagaccaacctggccaacatggtgacaccccatgtctattaagaatacaaaaattagccaggtg-tggtggtgagcacctgtaatgccagctattcaagagactgaagcaggagaatcacttgagcccgggaggtgaaggttgcagtga
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           285185 101 +  18854210 ------------------------AGTGAGACTCCATCTCTAAGAAGaaattttaaataattttaaaa----------------------------acttgggaggctgaggcaagagaattgcttaagcccaagagtttgaagttgctgtga
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               328825 685 + 123392446 I
e mm10.chr17               58082414 226 -  94987271 I
e dasNov3.JH580105            29799 638 -     45298 I
e proCoq1.NW_012149775v1     133763 419 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e aotNan1.NW_018496904v1     366801 346 -    383796 I
e cebCap1.NW_016107755v1     870838   9 -   1771730 I
e manLeu1.NW_012107142v1     292283 940 -    735854 M
e cerAty1.NW_012002535v1     449129 298 -    863181 I

a score=367548.000000
s hg38.chr6_GL000254v2_alt  1453879 71 +   4827813 gccaaaatcgcgccactgtactccagc------------------ctgggcaacagagcaagattccatctcaa-----aaaataa--aataa----------aat
s panTro5.chr6             30323248 71 + 175400573 gccaaaatcgcgccactgtactccagc------------------ctggccaacagagcaagattccatctcaa-----aaaataa--aataa----------aat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30557697 71 + 173848474 gccaaaatcgcgccactgtactccagc------------------ctgggcaacagagcaagattccatctcaa-----aaaataa--aataa----------aat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     264681 71 +   2037526 gccaaaatcgcgccactgtactccagc------------------ctgggcaacagagcaagattccatctcaa-----aaaataa--aataa----------aat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931709 76 + 122973662 gccaaaatcgcgccactgtactccagc------------------ctgggcaacagagcaagattccatttcaaaaaataaaataa--aataa----------aat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811272 68 + 172585720 gccaaaatcatgacactgtactccagc------------------ctgggcaagagggcgagattccacctcaa-----aaaagaa-----aa----------aat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100754 68 - 170955103 gccaaaatcatgacactgtactccagc------------------ctgggcaagagggcgagattccatctcaa-----aaaagaa-----aa----------aat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     349600 68 +   1495729 gccaaaatcatgacactgtactccagc------------------ctgggcaagagggcgagattccatctcaa-----aaaagaa-----aa----------aat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     449427 71 -    863181 gccaaaatcgcg-cactgtactccagc------------------ct-ggcaacagggcgagattccatctcaa-----aaaagaaaaaataa----------aat
i cerAty1.NW_012002535v1   I 298 C 0
s chlSab2.chr17            29599691 73 -  71996105 gccaaaatcgcgccactgtactccagc------------------ctgggcaacagggcgagattccatctcaa-----aaaagaaaaaataa----------aat
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     238048 73 -   1829203 gccaaaatcgtgccactgtactccagc------------------ctgggcaacagggcaagattccatctcaa-----aaaagaaaaaataa----------aat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30427183 86 + 171630274 gccgagatcgtgccactgcactccagccactgccactccctttctctgggcaacagagcaagactcaatctaaa-----aaaaaaa-----ag----------aag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           242433 63 +    515838 gctgagattgtgtcactgcactccagc------------------ctgggcaacagagtgagactcaatctaaa-----aaaaaga--------------------
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           285286 80 +  18854210 gctg---tgacgccatagcactctacc------------------aagggtgacatagtaacactctgtctcaa-----aaTAATAGTAATAATAAtaattttaaa
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               328825 685 + 123392446 I
e mm10.chr17               58082414 226 -  94987271 I
e dasNov3.JH580105            29799 638 -     45298 I
e proCoq1.NW_012149775v1     133763 419 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e aotNan1.NW_018496904v1     366801 346 -    383796 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I
e manLeu1.NW_012107142v1     292283 940 -    735854 M

a score=91335.000000
s hg38.chr6_GL000254v2_alt  1453950 14 +   4827813 aaatagaagaaggg
s panTro5.chr6             30323319 14 + 175400573 aaatagaagaaggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30557768 14 + 173848474 aaatagaagaaggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     264752 14 +   2037526 aaatagaagaaggg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931785 14 + 122973662 aaatagaagaaggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811340 14 + 172585720 aaatagaagaagtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100822 14 - 170955103 aaatagaagaagtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     349668 14 +   1495729 aaatagaagaagtg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     449498 14 -    863181 aaatagaagaagtg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29599764 14 -  71996105 aaatagaagaagta
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     238121 14 -   1829203 aaatagaagaagtg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30427269 14 + 171630274 aagaagaaaaagtg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           242496 14 +    515838 aaaaagaaaaagtg
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           285366 14 +  18854210 acataaaaaaaact
i otoGar3.GL873550         C 0 I 10
s mm10.chr17               58082640 14 -  94987271 aaaccaaagcattg
i mm10.chr17               I 226 C 0
e micMur3.chr6               328825 685 + 123392446 I
e dasNov3.JH580105            29799 638 -     45298 I
e proCoq1.NW_012149775v1     133763 419 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e aotNan1.NW_018496904v1     366801 346 -    383796 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I
e manLeu1.NW_012107142v1     292283 940 -    735854 M

a score=659089.000000
s hg38.chr6_GL000254v2_alt  1453964  79 +   4827813 taaagtac--------------------------------------tttttccattaaacacaactttattgatttggtaagact----atattttactttaacaattgacaa----tttagcat
s panTro5.chr6             30323333  79 + 175400573 taaagtac--------------------------------------tttttccattaaacacaactttattgatttggtaagact----atattttactttaacaattgacaa----tttagcat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30557782  79 + 173848474 taaagtac--------------------------------------tttttccattaaacacaactttattgatttggtaagact----atattttactttaacaattgacaa----tttagcat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     264766  79 +   2037526 taaagtac--------------------------------------tttttccattaaacacaactttattgatttggtaagact----atattttactttaacaattgacaa----tttagcat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931799  79 + 122973662 taaagtac--------------------------------------tttttccattaaacacaactttattgatttggtaggact----acattttactttaacaatCAACaa----tttagcat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811354  79 + 172585720 taaaatac--------------------------------------tttttccattaaacacaactttattggtttggtaggact----atattttactttaacaatcgacaa----tttagcat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100836  79 - 170955103 taaaatac--------------------------------------tttttccattaaatacaactttattggtttggtaggact----atattttactttaacaatcgacaa----tttagcat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     349682  79 +   1495729 taaaatac--------------------------------------tttttccattaaacacaactttattggtttggtaggact----atattttactttaacaatcgacaa----tttagcat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     449512  78 -    863181 taaaatac---------------------------------------ttttccattaaacacaactttattggtttggtaggact----atattttactgtaCCAATCAACGa----tttagcat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29599778  79 -  71996105 tgaaatac--------------------------------------tttttccattaaacacaactttattggtttggtaggact----atattttactttaacaatcgacaa----tttagcat
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     238135  79 -   1829203 taaaatac--------------------------------------tttttccattaaacacaacttgattggtttggtaggact----atattttactttaacaatCAATGG----tttagcat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30427283 113 + 171630274 taaaatacttatttctgctcattcatggcaaag----gaaaaaacttttttccattaaacacaactttatttatatggtagaact----gcattttactttaacaattgacaa----tttagcat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           242510 117 +    515838 taaaatacttttttctgctcatgcatagcaaagaaaaaaaaaaacttttttccattaaacacaactttattgatatggtagaact----acattttactttaacaattgacaa----tttagcat
i saiBol1.JH378341         C 0 C 0
s proCoq1.NW_012149775v1     134182  79 -   1411461 taaaatac--------------------------------------ttttcccattaagtacaactttattgatttggtaggact----acattttacttcaacGTTtaacaa----tttagcat
i proCoq1.NW_012149775v1   I 419 C 0
s otoGar3.GL873550           285390  81 +  18854210 taaaata---------------------------------------ttttttcattaaatacaaatttattgatttggtaggact-----cgttttactttaaTAATCAACAATTTTTTTAGCAT
i otoGar3.GL873550         I 10 C 0
s mm10.chr17               58082654  82 -  94987271 -caaatac--------------------------------------actttcagttaaatgccactttactggtttagtagaactaattacattttacctccacaattgGTAC----tttggcat
i mm10.chr17               C 0 C 0
e micMur3.chr6               328825 685 + 123392446 I
e dasNov3.JH580105            29799 638 -     45298 I
e canFam3.chr35            26320445 33836 +  26524999 I
e aotNan1.NW_018496904v1     366801 346 -    383796 I
e cebCap1.NW_016107755v1     870838   9 -   1771730 I
e manLeu1.NW_012107142v1     292283 940 -    735854 M

a score=560916.000000
s hg38.chr6_GL000254v2_alt  1454043 73 +   4827813 ctgaattgagatgtgccaaagtgaaaaat-atacacacaatttcaaagactcagtgt------aaaaaaaaaaaaaaaaa
s panTro5.chr6             30323412 73 + 175400573 ctgaattgagatgtgccaaagtgaaaaat-atacacacaatttcaaagactcagtgt------aaaaaaaaaaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30557861 73 + 173848474 ctgaattgagatgtgccaaagtgaaaaat-atacacacaatttcaaagactcagtgt------aaaaaaacaaaaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     264845 71 +   2037526 ctgaattgagatatgccaaagtg-aaaat-atacacacaatttcaaa-actcagtgt------aaaaaaaaaaaaaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931878 72 + 122973662 ccgaattgagatgtgccaaagtgaaaaat-atacacacgatttcaaagactcagtgt------aaaaaaaaaaaaacca-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811433 73 + 172585720 ccgaattgagatgtgccaaagtgaaaaac-atacacacaatttcaaagactcagtgt------aaaaaaaaaaaaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100915 73 - 170955103 ctgaattgagatgtgccaaagtgaaaaac-atacacacaatttcaaagactcagtgt------aaaaaaaaaaaaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     349761 79 +   1495729 ctgaattgagatgtgccaaagtgaaaaac-atacacacaatttcaaagactcagtgtaaaaaaaaaaaaaaaaaaaaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     449590 75 -    863181 ccgaa-tgagatgtgccaaagtg--aaat-aaacacacaa-ttcaaagactcagtgtaaaaaaaaaaaaaaaaaaaaaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29599857 73 -  71996105 ctgaattgagatgtgccaaagtgaaaaac-atacacacaatttcaaagactcagtgt------aaaaaaaaaaaaaaaaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     238214 73 -   1829203 ccgaattgagatgtgccaaagtgaaaaat-atacacacaatttcaaagactcagtgt------aaaaaaaaaaaaaaaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30427396 68 + 171630274 ctgaattgagatgtgctaaagtgaaaaat-atacacaccatttcaaagactcagtgt------taaaaaaaaaaa-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           242627 69 +    515838 ctgaattgagatgtgctgaagtgaaaaat-atacacaaaatttcatagactcaatgt------taaaaaaaaaaaa----
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     367147 69 -    383796 ctgaattgagatgtgataaagcaaaaaataatacacacaatttca-agactcagtat------aaaaaaaaaaaaa----
i aotNan1.NW_018496904v1   I 346 C 0
s proCoq1.NW_012149775v1     134261 65 -   1411461 ttgaattaagatgtgtttaagtgaaaaat-atatatcc---ttcacagactcagtat------taaaaaaaaaaa-----
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           285471 70 +  18854210 TTGAATTAAAAAGTATTTAAGCAAAAAAT-GTATATCC---TTCAAAGACTCAGTAT------AAAAAAAAAAAAAGCAA
i otoGar3.GL873550         C 0 I 1316
s mm10.chr17               58082736 50 -  94987271 ctaaattgaaatgtacaaaag--acaaac-tagca------ttcaaagacttagaac------ca---------------
i mm10.chr17               C 0 C 0
e micMur3.chr6               328825 685 + 123392446 I
e dasNov3.JH580105            29799 638 -     45298 I
e canFam3.chr35            26320445 33836 +  26524999 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I
e manLeu1.NW_012107142v1     292283 940 -    735854 M

a score=1096039.000000
s hg38.chr6_GL000254v2_alt  1454116 145 +   4827813 aaaaaccacca---aaaac----ccagaatgtgaaatatctcattaatacttttaaaat-attcattacaggctgaaagg-ataatatttcagatatattgagtt----aaaatattt----t-attaaaa-ttaatttcacttttatc---attttaatgtgacta
s panTro5.chr6             30323485 140 + 175400573 -----ccacca---aaaac----ccagaatgtgaaatatctcattaatacttttaaaat-attcattacaggctgaaagg-ataatatttcagatatattgagtt----aaaatattt----t-attaaaa-ttaatttcacttttatc---attttaatgtgacta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30557934 140 + 173848474 -----ccacca---aaaac----ccagaatgtgaaatatctcattaatacttttaaaat-attcattacaggctgaaagg-ataatatttcagatatattgagtt----aaaatattt----t-attaaaa-ttaatttcacttttatc---attttaatgtgacta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     264916 140 +   2037526 ----accacca---aaaac----ccagaatgtgaaatatctcattaatacttttaaaat-attcattacaggctgaaagg-ataatatttcagatatattgagtt----aaaata-tt----t-attaaaa-ttaatttcacttttatc---attttaatgtgacta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74931950 140 + 122973662 -----ccacca---aaaac----ccagaatgtgaaatatctcattaatacttttaaaat-attcattacaggctgaaagg-ataatatttcagatatattgagtt----aaaatattt----t-attaaaa-ttaatttcacttttatc---attttaatgtgacta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811506 142 + 172585720 --acaccacca---aaaac----ccggaatgtga-atgtctcattaatacttttaaaat-attcattacaggctgaaagg-ataatatttcagatatattgagtt----aaaatattt----t-attaaaa-ttaatttcacttttata---gttttaatgtggcta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30100988 142 - 170955103 --acaccacca---aaaac----ccggaatgtga-atgtctcattaatacttttaaaat-attcattacaggctgaaagg-ataatatttcagatatattgagtt----aaaatattt----t-attaaaa-ttaatttcacttttatc---gttttaatgtggcta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     349840 142 +   1495729 --aaaccacca---aaaac----ccggaatgtga-atgtctcattaatacttttaaaat-attcattacaggctgaaagg-ataatatttcagatatattgagtt----aaaatattt----t-attaaaa-ttaatttcacttttatc---gttttaatgtggcta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     449665 141 -    863181 --ccaccaccac--aaaac----ccggaatgtgacctatctca-taaaacttttaaaatcattcat---gggctgaaagg-ataatatttcagatatattgagtt----aaaatattt----t-attaaat-taaatttcacttttatc---attttaatgtggcta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29599930 146 -  71996105 --acaccaccaccaaaaac----ctggaatgtgaaatgtctcattaatacttttaaaat-attcattacaggctgaaagg-ataatatttcagatatattgagtt----aaaatattt----t-attaaaa-ttaatttcacttttatc---gttttaatgtggcta
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     238287 146 -   1829203 --aaaccaccaccaaaaac----ccggaatgtgaaatatctcattaacacttttaaaat-attcattataggctgaaagg-ataatatttcagatatattgagtt----aaaatattt----t-attaaaa-ttaatttcacttttatc---gttttaatatggcta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30427464 135 + 171630274 ---------cg---aaaac----ctagaatctgaaatagctcattaatacttttaaaat-atgcattacaggctgaaagg-ataatagttcaaatatattgaatt-----aaatgttt----t-attaaaa-ttaatttcacttttatc---tttttaatgtggcta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           242696 138 +    515838 ------aaccg---aaaac----ctggaatctgaaatatctcattaatacttttaaaat-atgcattacaggctgaaagg-ataatagttcagatacattgagtt-----aaatattt----t-attaaaa-ttaatttcacttttatc---tttttaatgtagcta
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     367216 140 -    383796 ------cacca---aaaac----ttggaatctg-aatatctcattaatacttttaaaat-atgcattacaggctgaaaggaaaaatagttcagagatattgagtt-----aaatattt----taattaaaatttaatttcacttttatc---tttttaacatggcta
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     134326 141 -   1411461 --------cca---aaaac----ccggaatgtgaaatatctcatgaatacttttaaaat-attcattacaggctgaaagg-ataacattttggatatattgagctaaataaaatattt----t-attaaaa-taaatttcacttttatc---tttttaatttggcta
i proCoq1.NW_012149775v1   C 0 I 99
s mm10.chr17               58082786 135 -  94987271 ----------a---aaaaccactcaagaatatgaaatagctcattaatatgtttaag-----------caggctgaaatg-attatattt--gaaatactgggttaaataaaatgtttagaat-gttttta-ttacatgtacttttatctgatttttcttttga---
i mm10.chr17               C 0 C 0
e micMur3.chr6               328825 685 + 123392446 I
e dasNov3.JH580105            29799 638 -     45298 I
e canFam3.chr35            26320445 33836 +  26524999 I
e otoGar3.GL873550           285541 1316 +  18854210 I
e cebCap1.NW_016107755v1     870838   9 -   1771730 I
e manLeu1.NW_012107142v1     292283 940 -    735854 M

a score=23851.000000
s hg38.chr6_GL000254v2_alt  1454261 4 +   4827813 acca
s gorGor5.CYUI01015528v1     265056 4 +   2037526 acta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932090 4 + 122973662 acta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811648 4 + 172585720 acta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101130 4 - 170955103 acta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     349982 4 +   1495729 acta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     449806 4 -    863181 acta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600076 4 -  71996105 acta
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     238433 4 -   1829203 acta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30427599 4 + 171630274 acta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           242834 4 +    515838 acta
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     367356 4 -    383796 acta
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58082921 4 -  94987271 aaca
i mm10.chr17               C 0 C 0
e micMur3.chr6               328825 685 + 123392446 I
e dasNov3.JH580105            29799 638 -     45298 I
e proCoq1.NW_012149775v1     134467 99 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e otoGar3.GL873550           285541 1316 +  18854210 I
e cebCap1.NW_016107755v1     870838 9 -   1771730 I
e manLeu1.NW_012107142v1     292283 940 -    735854 M
e panPan2.chr6             30558074 0 + 173848474 C
e panTro5.chr6             30323625 0 + 175400573 C

a score=410333.000000
s hg38.chr6_GL000254v2_alt  1454265 49 +   4827813 gaaaaatt----------tgtaattccatatgtggctgaaactacatttct-aAATCACA
s panTro5.chr6             30323625 49 + 175400573 gaaaaatt----------tgtaattccatatgtggctgaaactacatttct-aAATCACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558074 49 + 173848474 gaaaaatt----------tgtaattccatatgtggctgaaactacatttct-aAATCATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265060 49 +   2037526 gaaaaatt----------tgtaattccatatgtggctgaaactacatttct-aAATCACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932094 49 + 122973662 taaaaatt----------tgtaattccatatgtggctgaaattacatttct-aAATCACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811652 49 + 172585720 gaaaaatt----------tgtaattccatatgtggctgaaattacatttct-aAATCACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101134 49 - 170955103 gaaaaatt----------tgtaattccatatgtggctgaaattacatttct-aAATCACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     349986 49 +   1495729 gaaaaatt----------tgtaattccatatgtggctgaaattacatttct-aAATCACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     449810 45 -    863181 g-aaaatt----------tgtaattccatatgtggctg-aattacatttct-aAAT--CA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600080 49 -  71996105 gaaaaatt----------tgtaaatccatatgtggctgaaattacatttct-aAATCACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     293225 49 -    735854 GAAAAATT----------TGTAATTCCATATGTGGCTGAAATTACATTTCT-AAATCACA
i manLeu1.NW_012107142v1   M 940 C 0
s colAng1.NW_012115577v1     238437 49 -   1829203 aaaaaatt----------tgtaattccatatgtggctgaaattacatttct-aAATCACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30427603 49 + 171630274 gaaaaatt----------tataattccatatgtggctgaaattgcatttct-aCATCATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           242838 49 +    515838 gaaaaatt----------tataattccaaatgtggctgaaattacatttct-aAAGCATA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     367360 49 -    383796 gcaaaatt----------tataattccgtatgtggctgaaa-tacatttctaAAATCATA
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58082925 58 -  94987271 gagtagctctacttggcctggaattccacatgtagaccaggctg-actttg-aactcaca
i mm10.chr17               C 0 I 2389
e micMur3.chr6               328825 685 + 123392446 I
e dasNov3.JH580105            29799 638 -     45298 I
e proCoq1.NW_012149775v1     134467 99 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e otoGar3.GL873550           285541 1316 +  18854210 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=650034.000000
s hg38.chr6_GL000254v2_alt  1454314 76 +   4827813 CATGTGGCCAGAATTATATTTATGA---------ATTAC-A-TATGTGGCTCACATTTTCATTCTAATACATGCGGCTCACATATTG
s panTro5.chr6             30323674 76 + 175400573 CATGTGGCCAGAATTATATTTATGA---------ATTAC-A-TATGTGGCTCACATTTTCATTCTAATACTTGCGGCTCACATATTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558123 76 + 173848474 CATGTGGCCAGAATTATATTTATGA---------ATTAC-A-TATGTGGCTCACATTTTCATTCTAATACTTGCGGCTCACATATTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265109 76 +   2037526 CATGTGGCCAGAATTATATTTATGA---------ATTAC-A-TATGTGGCTCACATTTTCATTCTAATACATGCGGCTCACATATTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932143 74 + 122973662 C--GTGGCCAGAATTATATTTATGA---------ATTAC-A-TATGTGGCTCACATTTTCATTCTAATACATGCGGCTCACATATTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811701 76 + 172585720 CATGTGGCCAGAATTATATTTATGA---------ATTAC-A-TATGTGGCTCACATTTTCATTCTAATACATGCGGCTCACATATTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101183 76 - 170955103 CATGTGGCCAGAATTATATTTATGA---------ATTAC-A-TATGTGGCTCACATTTTCATTCTAATACATGCGGCTCACATATTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350035 76 +   1495729 CATGTGGCCAGAATTATATTTATGA---------ATTAC-A-TATGTGGCTCACATTTTCATTCTAATACATGCGGCTCACATATTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     449855 77 -    863181 CATGTGGCCAGAATTATATTTATAA---------ATTAC-ATTATGTGGCTCACATTTTCATTCTAATACATGCGGCTCACATATTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600129 76 -  71996105 CATGTGGCCAGAATTATATTTACAA---------ATTAC-A-TATGTGGCTCACATTTTCATTCTAATACATGCGGCTCACATATTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     293274 85 -    735854 CATGTGGCCAGAATTATATTTATAAATTATATTTATTAC-A-TATGTGGCTCACATTTTCATTCTAATACATGCGGCTCACATATTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     238486 76 -   1829203 CATGTGGCCAGAATTATATTTATAA---------ATTAC-A-TATGTGGCTCACATTTTCATTTTAATACATGCGGCTCACATATTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30427652 76 + 171630274 CATGTGGCCTGtattatatttataa---------attat-a-tatGTGGCTCACATTATCATTCTAatacatgtggctcacatattg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           242887 76 +    515838 CATGTGGCCTGTATTATATTTATAA---------ATTAT-A-CGTGTGGCTCACATTGTCATTCTAATACATGTGGCTCACGTATTG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     367409 75 -    383796 CATGTGGCCTGTATTATATTTATAA---------ATTATAA-TATGTGGCTTACATTATCATCT--GTACATGTGGCTCACATATTG
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               328825 685 + 123392446 I
e mm10.chr17               58082983 2389 -  94987271 I
e dasNov3.JH580105            29799 638 -     45298 I
e proCoq1.NW_012149775v1     134467 99 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e otoGar3.GL873550           285541 1316 +  18854210 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=90775.000000
s hg38.chr6_GL000254v2_alt  1454390 11 +   4827813 CTA-TTGGACAG
s panTro5.chr6             30323750 11 + 175400573 CTA-TTGGACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558199 11 + 173848474 CTA-TTGGACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265185 11 +   2037526 CTA-TTGGACAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932217 11 + 122973662 CTA-TTGGACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811777 11 + 172585720 CTA-TTGGACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101259 11 - 170955103 CTA-TTGGACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350111 11 +   1495729 CTA-TTGGACAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     449932  9 -    863181 C---TTGGACAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600205 11 -  71996105 CTA-TTGGACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     293359 11 -    735854 CTT-TTGGACAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     238562 11 -   1829203 CTA-TTGGACAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30427728 11 + 171630274 cta-ttggacag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           242963 11 +    515838 CTA-TTGGACAG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     367484 12 -    383796 CTATTTGGACTG
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     134566 10 -   1411461 CTA-TTGGAAG-
i proCoq1.NW_012149775v1   I 99 C 0
e micMur3.chr6               328825 685 + 123392446 I
e mm10.chr17               58082983 2389 -  94987271 I
e dasNov3.JH580105            29799 638 -     45298 I
e canFam3.chr35            26320445 33836 +  26524999 I
e otoGar3.GL873550           285541 1316 +  18854210 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=508641.000000
s hg38.chr6_GL000254v2_alt  1454401 49 +   4827813 CACTGGGCTAGAGGTAGG-ATGGTTGGGG-CAATCTCAGGTATTCTGCCAG-
s panTro5.chr6             30323761 49 + 175400573 CACTGGGCTAGAGGTAGG-ATGGTTGGGG-CAATCTCAGGTATTCTGCCAG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558210 49 + 173848474 CACTGGGCTAGAGGTAGG-ATGGTTGGGG-CAATCTCAGGTATTCTGCCAG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265196 49 +   2037526 CACTGGGCTAGAGGTAGG-ATGGTTGGGG-CAATCTCAGGTATTCTGCCAG-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932228 49 + 122973662 CACTGGGCTAGAGGTAGG-ATGGTTGGGG-CAATCTCAGGTATTCTGCCAG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811788 48 + 172585720 CACTGGGCTGGAGGTAGG-ATGG-TGGGG-CAATCTCAGGTATTCTGCCAG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101270 48 - 170955103 CACTGGGCTGGAGGTAGG-ATGG-TGGGG-CAATCTCAGGTATTCTGCCAG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350122 48 +   1495729 CACTGGGCTGGAGGTAGG-ATGG-TGGGG-CAATCTCAGGTATTCTGCCAG-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     449941 49 -    863181 CACTGGGCTGGAGGTAGG-ATGGTTGGGG-CAATCTCAGGTATTCTGCCAG-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600216 49 -  71996105 CACTGGGCTGGAGGTAGG-ATGGTTGGGG-CAATCTCAGGTATTCTGCCAG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     293370 48 -    735854 CACTGGGCTGGAGGTAGG-ATGG-TGGGG-CAATCTCAGGTATTCTGTCAG-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     238573 49 -   1829203 CACTGGGCTGGAGGTAGG-ATGGTTGGGG-CAGTCTCAGGTATTCTGCCAG-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30427739 48 + 171630274 cactgGGCTAGAGGTAGG-ATGG-TCGGG-CAATCTCAGGTATTCTGCCAG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           242974 48 +    515838 CACTGGACTAGAGGTAGG-ATGG-TCGGG-CAATCTCAGGTATTCTGCCAG-
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     367496 48 -    383796 CACTGG-CTAGGGGTAGGAATGG-CCGGG-CAATCTCAGGTATTCTGCCAG-
i aotNan1.NW_018496904v1   C 0 I 803
s micMur3.chr6               329510 49 + 123392446 CACTGGGCTAGAGGTAGG-ATGA-TTGGG-CAATCTCAGGTATTGTGCTAGG
i micMur3.chr6             I 685 C 0
s proCoq1.NW_012149775v1     134576 50 -   1411461 TACGGGCCTAGAGGTAGG-ATGA-TAGGGACAATCTCAGGTATTGTGCTAGG
i proCoq1.NW_012149775v1   C 0 C 0
e mm10.chr17               58082983 2389 -  94987271 I
e dasNov3.JH580105            29799 638 -     45298 I
e canFam3.chr35            26320445 33836 +  26524999 I
e otoGar3.GL873550           285541 1316 +  18854210 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=439442.000000
s hg38.chr6_GL000254v2_alt  1454450 45 +   4827813 TGGTCCATGCTCTGACCTGAGACTAGGGATGGGCTGCTACCTCTC
s panTro5.chr6             30323810 45 + 175400573 TGGTCCATGCTCTGACATGAGACTAGGGATGGGCTGCTACCTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558259 45 + 173848474 TGGTCCATGCTCTGACCTGAGACTAGGGATGGGCTGCTACCTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265245 45 +   2037526 TGGTCCATGCTCTGACCTGAGACTAGGGATGGGCTGCTACCTCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932277 45 + 122973662 TGGTCCATGCTCTGACCTGAGACTAGGGATGGGCTGCTACCTCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811836 45 + 172585720 TGGTCCATGCTCTGACCTGAGACTAGGGATGGGTTGCTACCTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101318 45 - 170955103 TGGTCCATGCTCTGACCTGAGACTAGGGATGGGTTGCTACCTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350170 45 +   1495729 TGGTCCATGCTCTGACCTGAGACTAGGGATGGGTTGCTACCTCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     449990 45 -    863181 TAGTCCACGCTCTGACCTGAGACTGAGGATGGGTTGCTACCTCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600265 45 -  71996105 TGGTCCATGCTCTGACCTGAGACTAAGGATGGGTTGCTACCTCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     293418 45 -    735854 TGGTCCATGCTCTGACCTGAGACTAGGGATGGGTTGCTACCTCTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     238622 45 -   1829203 TGGTCCATGCTCTGACCTGAGACTAGGGATGGGTTGCTACCTCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30427787 45 + 171630274 TGGCCTATGCTCTGACCTGAGACTAGGGATGGGCTACCACCTCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243022 45 +    515838 TGACCCATGCTCTGACCTGAGACTAGGGACGGGCTGCTGCCTCTC
i saiBol1.JH378341         C 0 C 0
s micMur3.chr6               329559 43 + 123392446 GGGTCAGTGCTGTCACCTGAGACTAGG-ATGGGCTGCTACCTCT-
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     134626 45 -   1411461 CGGTCAGTGCTGTCACCTGAGACTAGGAATGGGCTGCTACCTCTC
i proCoq1.NW_012149775v1   C 0 I 278
e mm10.chr17               58082983 2389 -  94987271 I
e dasNov3.JH580105            29799 638 -     45298 I
e canFam3.chr35            26320445 33836 +  26524999 I
e otoGar3.GL873550           285541 1316 +  18854210 I
e aotNan1.NW_018496904v1     367544 803 -    383796 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=47912.000000
s hg38.chr6_GL000254v2_alt  1454495 6 +   4827813 TGCAAT
s panTro5.chr6             30323855 6 + 175400573 TGCAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558304 6 + 173848474 TGCAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265290 6 +   2037526 TGCAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932322 6 + 122973662 TGCAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811881 6 + 172585720 TGCAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101363 6 - 170955103 TGCAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350215 6 +   1495729 TGCAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450035 6 -    863181 TGCAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600310 6 -  71996105 TGCAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     293463 6 -    735854 TGCAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     238667 6 -   1829203 TACAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30427832 6 + 171630274 TACAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243067 6 +    515838 TACAGT
i saiBol1.JH378341         C 0 C 0
s micMur3.chr6               329602 5 + 123392446 -GCGAT
i micMur3.chr6             C 0 C 0
e mm10.chr17               58082983 2389 -  94987271 I
e dasNov3.JH580105            29799 638 -     45298 I
e proCoq1.NW_012149775v1     134671 278 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e otoGar3.GL873550           285541 1316 +  18854210 I
e aotNan1.NW_018496904v1     367544 803 -    383796 I
e cebCap1.NW_016107755v1     870838 9 -   1771730 I

a score=46998.000000
s hg38.chr6_GL000254v2_alt  1454501 6 +   4827813 TCTGCC
s panTro5.chr6             30323861 6 + 175400573 TCTGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558310 6 + 173848474 TCTGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265296 6 +   2037526 TCTGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932328 6 + 122973662 TCTGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811887 6 + 172585720 TCTGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101369 6 - 170955103 TCTGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350221 6 +   1495729 TCTGCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450041 6 -    863181 TCTGCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600316 6 -  71996105 TCTGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     293469 6 -    735854 TCTGCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     238673 6 -   1829203 TCTGCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30427838 6 + 171630274 TCTTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243073 6 +    515838 TCTTTC
i saiBol1.JH378341         C 0 C 0
s micMur3.chr6               329607 6 + 123392446 TCAGAC
i micMur3.chr6             C 0 I 4
s mm10.chr17               58085372 6 -  94987271 TTTATT
i mm10.chr17               I 2389 C 0
e dasNov3.JH580105            29799 638 -     45298 I
e proCoq1.NW_012149775v1     134671 278 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e otoGar3.GL873550           285541 1316 +  18854210 I
e aotNan1.NW_018496904v1     367544 803 -    383796 I
e cebCap1.NW_016107755v1     870838 9 -   1771730 I

a score=47005.000000
s hg38.chr6_GL000254v2_alt  1454507 5 +   4827813 CCCAA
s panTro5.chr6             30323867 5 + 175400573 CCCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558316 5 + 173848474 CCCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265302 5 +   2037526 CCCAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932334 5 + 122973662 CCCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811893 5 + 172585720 CTCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101375 5 - 170955103 CCCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350227 5 +   1495729 CCCAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450047 4 -    863181 C-CAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600322 5 -  71996105 CCCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     293475 5 -    735854 CTCAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     238679 5 -   1829203 CCCAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30427844 5 + 171630274 CCCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243079 5 +    515838 CCCAA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     368347 5 -    383796 CCCAA
i aotNan1.NW_018496904v1   I 803 C 0
s micMur3.chr6               329617 5 + 123392446 CCCAA
i micMur3.chr6             I 4 C 0
s mm10.chr17               58085378 5 -  94987271 CACAT
i mm10.chr17               C 0 C 0
e dasNov3.JH580105            29799 638 -     45298 I
e proCoq1.NW_012149775v1     134671 278 -   1411461 I
e canFam3.chr35            26320445 33836 +  26524999 I
e otoGar3.GL873550           285541 1316 +  18854210 I
e cebCap1.NW_016107755v1     870838 9 -   1771730 I

a score=279251.000000
s hg38.chr6_GL000254v2_alt  1454512 21 +   4827813 GGGACTCACCTCCAGCA-GCTG
s panTro5.chr6             30323872 21 + 175400573 GGGACTCACCTCCAGCA-GCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558321 21 + 173848474 GGGACTCACCTCCAGCA-GCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265307 21 +   2037526 GGGACTCACCTCCAGCA-GCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932339 21 + 122973662 GGGACTCACCTCCAGCA-GCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811898 21 + 172585720 GGGACTCACCTCCAGCA-GCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101380 21 - 170955103 GGGACTCACCTCCAGCA-GCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350232 21 +   1495729 GGGACTCACCTCCAGCA-GCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450051 22 -    863181 GGGACTCACCTCCAGCAGGCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600327 21 -  71996105 GGGACTCACCTCCAGCA-GCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     293480 21 -    735854 GGGACTCACCTCCAGCA-GCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     238684 21 -   1829203 GGGACTCACCTCCAGCA-GCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30427849 21 + 171630274 AGGACTCACCTCCAGCA-GCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243084 21 +    515838 GGGACTCAGCTCCAGCA-GCTG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     368352 20 -    383796 GGAACTCA-CTCCAGCA-GCTG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               329622 21 + 123392446 GGGACTCACCTCTAGCA-GCTG
i micMur3.chr6             C 0 I 1527
s mm10.chr17               58085383 21 -  94987271 AGGACTCACCTTTAGTA-GCTC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26354281 21 +  26524999 GGGGCTCACCGTCAGCA-GCTC
i canFam3.chr35            I 33836 C 0
s dasNov3.JH580105            30437 21 -     45298 GGGTCTCACCCAGAGCA-GCTC
i dasNov3.JH580105         I 638 C 0
e proCoq1.NW_012149775v1     134671 278 -   1411461 I
e otoGar3.GL873550           285541 1316 +  18854210 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=282990.000000
s hg38.chr6_GL000254v2_alt  1454533 29 +   4827813 CCTGGGTGGC-ATGTTC-TGCTTGGTCTTCA
s panTro5.chr6             30323893 29 + 175400573 CCTGGGTGGC-ATGTTC-TGCTTGGTCTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558342 29 + 173848474 CCTGGGTGGC-ATGTTC-TGCTTGGTCTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265328 29 +   2037526 CCTGGGTGGC-ATGTTC-TGCTTGGTCTTCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932360 29 + 122973662 CCTGGGTGGC-ATGTTC-TGCTTGGTCTTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811919 29 + 172585720 CCTGGGTGGC-ATGTTC-TGCTTGGTCTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101401 29 - 170955103 CCTGGGTGGC-ATGTTC-TGCTTGGTCTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350253 29 +   1495729 CCTGGGTGGC-ATGTTC-TGCTTGGTCTTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450073 31 -    863181 CCTGGGTGGCAATGTTCGTGCTTGGTCTTTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600348 29 -  71996105 CCTGGGTGGC-ATGTTC-TGCTTGGTCTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     293501 29 -    735854 CCTGGGTGGC-ATGTTC-TGCTTGGTCTTTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     238705 29 -   1829203 CCTGGGTGGC-ATGTTC-TGCTTGGTCTTTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30427870 29 + 171630274 CCTGGGTGGC-ATTTTC-TGCTTGATCTTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243105 28 +    515838 CCTGAGTGGC-ATTTTC-T-CTTGATCTTCA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     368372 29 -    383796 CCTGGGTGGC-ATTTTC-TGCTTGATCTTCA
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58085404 29 -  94987271 CATGGATGAT-GATTGC-AGCCTTATTTTCA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26354302 29 +  26524999 CCTGGCGGGC-CTCCCC-AGCTTCTCCTCCA
i canFam3.chr35            C 0 I 59
s dasNov3.JH580105            30458 29 -     45298 GCTGGGGCAC-AGTTCC-TGCCTGGCCCTCA
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e proCoq1.NW_012149775v1     134671 278 -   1411461 I
e otoGar3.GL873550           285541 1316 +  18854210 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=581741.000000
s hg38.chr6_GL000254v2_alt  1454562 67 +   4827813 GGGAATCAACGAGCTTCTTGAGATCGTTCAACTGTGGCTCAGTGGAGGCAACATAGTGTTTCCCCGC-
s panTro5.chr6             30323922 67 + 175400573 GGGAATCAATGAGCTTCTTGAGATCGTTCAACTGTGGCTCAGTGGAGGCAACATAGTGTTTCCCCGC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558371 67 + 173848474 GGGAATCAATGAGCTTCTTGAGATTGTTCAACTGTGGCTCAGTGGAGGCAACATAGTGTTTCCCTGC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265357 67 +   2037526 GGGAATCAATGAGCTTCTTGAGATCATTCAACTGTGGCTCAGTGGAGGCAACATAGCGTTTCCCCGC-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932389 67 + 122973662 GGGAATCAATGAGCTTCTTGAGACAGTTCAGCTGTGGCTCGGTGGAGGCAACATAGTGTTTCCCGGC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30811948 65 + 172585720 GGGAATCAATGAGCTTCTTGAGATAGTTCGACTGTGGCTCAGGGGAGGCTAC--AGTGTTTCCCCGC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101430 65 - 170955103 GGGAATCAATGAGCTTCTTGAGATAGTTCGACTGTGGCTCAGTGGAGGCTAC--AGTGTTTCCCCGC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350282 65 +   1495729 GGGAATCAATGAGCTTCTTGAGATAGTTCGACTGTGGCTCAGTGGAGGCTAC--AGTGTTTCCCCGC-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450104 65 -    863181 GGGAATCAATGAGCTTCTTGAGATAGTTCAACTGTGGCTCGGTGGAGGCTAC--AGTGTTTCCCCGC-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600377 65 -  71996105 GGGAATCAATGAGCTTCTTGAGATAGTTCAACTGTGGCTCGGTGGAGGTTAC--AGTGTTTCCCCAC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     293530 65 -    735854 GGGAATCAATGAGCTTCTTGAGATAGTTCAACTGTGGCTCGATGGAGGCTAC--AGTGTTTCCCCGC-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     238734 65 -   1829203 GGGAATCAATGAGCTTCTTGAGATAGTTCAACTGTGGCTCGGTGGAGGCTAC--AGTGTTTCCCCAC-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30427899 67 + 171630274 GGGAACCAATGAGCTCCCTGAGATTGTTCAACTGTGGCTCCGTGGAGGGAACATAGTGTTTCCCTGC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243133 65 +    515838 AGGAATCAATGAGCTCCTTGAGATTGTTCAGCTGTGGCTCGGTGGAGGCAAC--AGTATTTCCCTGC-
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     368401 67 -    383796 GGGAATCCATGAGCTCCTTGAGATTGTTCGACTGTAGCTCGGTGGAGGCAACATGGTGTTTCCCTGC-
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58085433 67 -  94987271 AGGATTTAGTGAGCTTCCTTAGAGAGTTCAGCTGCTTCTCTGTCACAGTGACATATTGTCTCAACTG-
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            30487 67 -     45298 GGGAATCCACCAGCTTGCCGAGGGAGCGCAGCTGCGCCTCGGTGGATGTGGTG-AAGATGTCGCGGCC
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e proCoq1.NW_012149775v1     134671 278 -   1411461 I
e canFam3.chr35            26354331 59 +  26524999 I
e otoGar3.GL873550           285541 1316 +  18854210 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=1295263.000000
s hg38.chr6_GL000254v2_alt  1454629 134 +   4827813 TTCCGTTCCCTCATGAC----CCAGCCAGTAAATCCGTGATAGC----AGGAAATTCTTCTCCTCCTCTAGGACTTGATGCAGGAGTTCAAATTCTGTGAGGATCCTTTGCTTCTCATGTTCTACCTGGTCCT------AAGAAACAG-
s panTro5.chr6             30323989 134 + 175400573 TTCCGTTCCCTCATGAC----CCAGCCAGTAAATCCGTGATAGC----AGGAAATTCTTCTCCTCCTCTAGGACTTGATGCAGGAGTTCAAATTCTGTGAGGATCCTTTGCTTCTCATGTTCTACCTGGTCCT------AAGAAACAG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558438 134 + 173848474 TTCCGTTCCCTCATGAC----CCAGCCAGTAAATCCGTGATAGC----AGGAAATTCTTCTCCTCCTCTAGGACTTGATGCAGGAGTTCAAATTCTGTGAGGATCCTTTGCTTCTCATGTTCTACCTGGTCCT------AAGAAACAG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265424 134 +   2037526 TTCCGTTCCCTCATGAC----CCAGCCAGTAAATCCGTGATAGC----AGGAAATTCTTCTCCTCCTCTAGGACTTGATGCAGGAGTTCAAATTCTGTGAGGATCCTTTGCTTCTCATGTTCTACCTGGTCCT------AAGAAACAG-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932456 134 + 122973662 TTCCGTTCCCTCGTGAC----CCAGCCAGTAAATCCGTGACAGC----AGGAAATTCTTCTCCTCCTCTAGGACTTGATGCAGGAGTTCAAATTCTGTGAGGATCCTTTGCTTCTCATGTTCTACCTGGTCCT------AAGAAACAG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30812013 131 + 172585720 TTCGGCTCCCTCAGAAC----CCAGCCAGTAAATCCGTGACAGC----AGGGAATTCTT---CTCCTCTAGGACTTGATGCAGGCGTTCAAATTCTGTAAGGATCCTTTGCTTCTCATGTTCTACCTGGTCCT------AAGAAACAG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101495 134 - 170955103 TTCGGCTCCCTCAGAAC----CCAGCCAGTAAATCCGTGACAGC----AGGGAATTCTTCTCCTCCTCTAGGACTTGATGCAGGCGTTCAAATTCTGTAAGGATCCTTTGCTTCTCATGTTCTACCTGGTCCT------AAGAAACAG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350347 134 +   1495729 TTCGGCTCCCTCAGAAC----CCAGCCAGTAAATCCGTGACAGC----AGGGAATTCTTCTCCTCCTCTAGGACTTGATGCAGGCGTTCAAATTCTGTAAGGATCCTTTGCTTCTCATGTTCTACCTGGTCCT------AAGAAACAG-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450169 134 -    863181 TTCGGCTCCCTCAGAAC----CCAGCCAGTAAATCCGTGACAGC----AGGGAATTCTTCTCCTCCTCTAGGACTTGATGCAGGCGTTCAAATTCTGTAAGGATCCTTTGCTTCTCATGTTCTACCTGGTCCT------AAGAAACAG-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600442 134 -  71996105 TTCGGCTCCCTCATAAC----CCAGCCAGTAAATCTGTGACAGC----AGGGAATTCTTCTCCTCCTCTAGGACTTGACGCAGGCGTTCAAATTCTGTAAGGATCCTTTGCTTCTCATGTTCCACCTGGTCCT------AAGAAACAG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     293595 134 -    735854 TTCGGCTCCCTCAGAAC----CCAGCCAGTAAATCCGTGACAGC----AGGGAATTCTTCTCCTCCTCTAGGACTTGATGCAGGCGTTCAAAATCTGTAAGGATCCTTTGCTTCTCATGTTCTACCTGGTCCT------AAGAAACAG-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     238799 134 -   1829203 TTCAGCTCCCTGATAAC----CCAGCCAGTAAATCCGTGACAGA----AGGGAATTCTTCTCCTCCTCTAGGACTTGATGCAGGCGTTCAAATTCTGTAAGGATCCTTTGCTTCTCATGTTCTACCTGGTACT------AAGAAACAG-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30427966 115 + 171630274 TTCAGCTTCCTAATGAC----CCAGCCAGTAAATCTGTGACAGC----AGAAAAGTCTTCTCCTCCTCTAGGATCTGATGCAGGTGCTCAGG-------------------TTCTCATGTTCCACCTGGTCCT------AAGAAAAAG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243198 131 +    515838 TTCAGCTCCCTCATGAC----CCTGCCAGTAAATCCATGACAGC----AGGAAA---TTCTTCTCCTCTAGGATCTGATGCAGGAGTTCAGGTTCTATGAGGATCGTTTGCTTCTCATGTTCCACCTGGTCCT------AAGAAACAG-
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     368468 134 -    383796 TTCGGCTCTCTCATGAC----CCAGCCAGTAAATCCGTGACAGC----AGGAAAGTCTTCTCCTCCTCCAGGATCTGATGCAGGTGTTCAAGTTCTGTGAGGATCCTTTGCTTCTCATGTTCCACCTGGTCCT------AAGAAACAG-
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58085500 134 -  94987271 CTTGGCTCCCTGCTGCT----CCAGCCAGTCCAGCCTGGACAGG----AGGAAACTCTCTTCCTCATCTAGTCTCTGGCGCAGGAGCTTGAATTCCTCATGGATCTTTAGTTTCTCTAGATCCACCTGGGCCT------GGGGACGAA-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26354390 134 +  26524999 TCCCGTTGCTTCAGGATGTCGCCATCCAGCTTCTCCAGCTCAGCTAAAAGGACGCTCTGCTGCTCCTCCAGGAACTGACTCAGATGTGCAAACTCGAAAATCACTTTTTGTCTTTTGGTGGCCACCTGGCACT------G---------
i canFam3.chr35            I 59 C 0
s dasNov3.JH580105            30554 141 -     45298 CTTGGCCCCCTCCTGGT----CCAGCCAGGCCAGCCTGGAGAGC----AGGAACTTCTCCTCCTCCTTGAGCACCTGCCTCAGGCGCTTGAATTCCGCGGCCACGCGCTGCTTCTCGAACTCCACCTGGGCCTGGAGCAAAGAAAACGA
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e proCoq1.NW_012149775v1     134671 278 -   1411461 I
e otoGar3.GL873550           285541 1316 +  18854210 I
e cebCap1.NW_016107755v1     870838   9 -   1771730 I

a score=476347.000000
s hg38.chr6_GL000254v2_alt  1454763 46 +   4827813 GGACAGGCAGAGGGTGAGAGGATGGCCTCGAA---GGTCCTTCTAGCCC
s panTro5.chr6             30324123 46 + 175400573 GGACAGGCAGAGGATGAGAGGATGGCCTCGAA---GGTCCTTCTAGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558572 46 + 173848474 GGACAGGCAGAGGGTGAGAGGATGGCCTCGAA---GGTCCTTCTAGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265558 46 +   2037526 GGACAGGCAGAGGATGAGAGGATGGCCTCGAA---GGTCCTTCTAGCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932590 46 + 122973662 GGACAGGCAGAGGATGAGAGGATGGCCTTGAA---GGTCCTTCTAACCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30812144 46 + 172585720 GGACAGGCAGAGGATGAAAGGATGGCCTAAAA---TGTCCTTCTAGCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101629 46 - 170955103 GGACAGGCAGAGGATGAAAGGATGGCCTCAAA---GGTCCTTCTAGCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350481 46 +   1495729 GGACAGGCAGAGGATGAAAGGATGGCCTCAAA---GGTCCTTCTAGCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450303 46 -    863181 GGATAGGCAGAGGGTGAAAGGATGGCCTCAAA---GGTCCTTCTAGACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600576 46 -  71996105 GGACAGGCAGTGGATGAAAGGATGGCCTTGAA---GGTCCTTCTAGCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     293729 46 -    735854 GGACAGGCAGAGGATGAAAGGATGGCCTCAAA---GGTCCTTCTAGCCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     238933 46 -   1829203 GGACAGGCAGAGGATGAAAGGATGGCCTTGAA---GGTCCTTCTAGCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30428081 46 + 171630274 GGACAGGCAGAGGATGAGAGGATGTCCTCGAA---GGTGTGTCTAGCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243329 46 +    515838 GGACAGGCAGAGGATGAGAGGATGGCCTCGAA---GGTGCTTCTAGCCC
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     368602 46 -    383796 GGACAGGCAGAGGATGAGAGAATGGCCTCGAA---GGTGCTTCTAGCCC
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     134949 45 -   1411461 GGACAGGCAGAAGATGAGAGGGTGGCCTCGAA----GTCCTTCTAGCCC
i proCoq1.NW_012149775v1   I 278 I 93
s mm10.chr17               58085634 48 -  94987271 GGAGAGGATGCAGATATGAG-ATGACCATGAGAAGGGTCCTCCAAGCCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26354524 42 +  26524999 -GGCAGG--GTGGAGGCCAGGAGGGAGTTATG---CCTCCTCCTCCCC-
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            30695 45 -     45298 CAGCGGGGTGGGGGTGGGGGGGTTG-TTCAGA---GGCCACTCCAGCCC
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e otoGar3.GL873550           285541 1316 +  18854210 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=63950.000000
s hg38.chr6_GL000254v2_alt  1454809 6 +   4827813 ACTTTA
s panTro5.chr6             30324169 6 + 175400573 ACTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558618 6 + 173848474 ACTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265604 6 +   2037526 ACTTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932636 6 + 122973662 ACTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30812190 6 + 172585720 ACTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101675 6 - 170955103 ACTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350527 6 +   1495729 ACTTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450349 6 -    863181 ACTTTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600622 6 -  71996105 ACTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     293775 6 -    735854 ACTTTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     238979 6 -   1829203 ACTTTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30428127 6 + 171630274 CCTTTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243375 6 +    515838 ACTTTA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     368648 6 -    383796 ACTTTA
i aotNan1.NW_018496904v1   C 0 C 0
s mm10.chr17               58085682 6 -  94987271 CCTTTA
i mm10.chr17               C 0 I 1520
s canFam3.chr35            26354566 5 +  26524999 -CCTTC
i canFam3.chr35            C 0 I 1
s dasNov3.JH580105            30740 5 -     45298 -CTCAA
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e proCoq1.NW_012149775v1     134994 93 -   1411461 I
e otoGar3.GL873550           285541 1316 +  18854210 I
e cebCap1.NW_016107755v1     870838 9 -   1771730 I

a score=76861.000000
s hg38.chr6_GL000254v2_alt  1454815 8 +   4827813 TTCAGCCA----
s panTro5.chr6             30324175 8 + 175400573 TTCAGCCA----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558624 8 + 173848474 TTCAGCCA----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265610 8 +   2037526 TTCAGCCA----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932642 8 + 122973662 TTCAGCCA----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30812196 8 + 172585720 TTCAGCCA----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101681 8 - 170955103 TTCAGCCA----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350533 8 +   1495729 TTCAGCCA----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450355 8 -    863181 TTCAGCCA----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600628 8 -  71996105 TTCAGCCA----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     293781 8 -    735854 TTCAGCCA----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     238985 8 -   1829203 TTCAACCA----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30428133 8 + 171630274 TTCAGCTA----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243381 8 +    515838 TTCAGCTA----
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     368654 8 -    383796 TTCAGCTA----
i aotNan1.NW_018496904v1   C 0 C 0
s canFam3.chr35            26354572 8 +  26524999 TTCTGCCA----
i canFam3.chr35            I 1 T 33005
s dasNov3.JH580105            30745 8 -     45298 ----GCCAGTTT
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e mm10.chr17               58085688 1520 -  94987271 I
e proCoq1.NW_012149775v1     134994 93 -   1411461 I
e otoGar3.GL873550           285541 1316 +  18854210 I
e cebCap1.NW_016107755v1     870838 9 -   1771730 I

a score=667391.000000
s hg38.chr6_GL000254v2_alt  1454823 74 +   4827813 -TTAATTTTATTAAGTTTGTGTGGAATTCCCAACCAGAGCAATGTGCCAGGGCAGACCTGGAAGAAAGGAAAGGA
s panTro5.chr6             30324183 74 + 175400573 -TTAATTTTATTAAGTTTATGTGGAATTCCCAACCAGAGCAATGTGCCAGGGCAGACCTGGAAGAAAGGAAAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558632 74 + 173848474 -TTAATTTTATTAAGTTTATGTGGAATTCCCAAGCAGAGCAATGTGCCAGGGCAGACCTGGAAGAAAGGAAAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265618 74 +   2037526 -TTAATTTTATTAAGTTTCTGTGGAATTCCCAACCAGAGCAATGTGCCAGGGCAGACCTGGAAGAAAGGAAAGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932650 74 + 122973662 -TTAATTTTATTAAGTTTATATGGAATTCCCAACCAGAGCAATGTGCCAGGGCAGACCCGGAAGAAAGGCAAGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30812204 74 + 172585720 -TTAATTTTATTAAGTTTATATGGAATTCCCAACCAGAGCAATGTGCCAGGGCAGACCTGGAAGAAAGGAAAGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101689 74 - 170955103 -TTAATTTTATTAAGTTTATATGGAATTCCCAACCAGAGCAATGTGCCAGGGCAGACCTGGAAGAAAGGAAAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350541 74 +   1495729 -TTAATTTTATTAAGTTTATATGGAATTCCCAACCAGAGCAATGTGCCAGGGCAGACCTGGAAGAAAGGAAAGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450363 74 -    863181 -TTAATTGTATTAAGTTTATATGGAATTCCCAACCAGAGCAATGTGCCAGGGCAGACCTGGAAGAAAGGAAAGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600636 74 -  71996105 -TTAATTTTATTAAGTTTATATGAAATTCCCAACCAGAGCAACGTGCCAGGGCAGACCTGGAAGAAAGGAAAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     293789 74 -    735854 -TTAATTTTATTAAGTTTATATGGAATTCCCAACCAGAGCAATGTGCCAGGGCAGACCTGGAAGAAAGGAAAGGA
i manLeu1.NW_012107142v1   C 0 I 5867
s colAng1.NW_012115577v1     238993 74 -   1829203 -TTAATTTTATTAAGTTTATATGGAATTCCCAACCAGAGCAATGTGCCAGGGTAGACCTGGAAGAAAGGAAAGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30428141 65 + 171630274 -TTAAT---------TTTATCCAGAGTTCCCAACCAGAGCAGTGTGCCAGGGCAGAGCTGGAAGAAAGGAAAGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243389 74 +    515838 -TTAACTTCATTAAGTTTATCTGAAGTTCCCAACAAGAGCAGTGTGCCAGGGCAGGGCTGGGAGAAAGGAAAGGA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     368662 74 -    383796 -TTAATTTTATTAAGTTTATCCGGAGCTCCCAACCACAGCAGTGTGCCAGGGCAGACCTGGAAGAAAGGAAAGGA
i aotNan1.NW_018496904v1   C 0 C 0
s dasNov3.JH580105            30753 72 -     45298 TCCAACTTTATTCAG-TTATACTGAGGACCAAGACAGAGCCACGTGCTGTGGAAG--CCAGGGGTGGGGAAAGGT
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e mm10.chr17               58085688 1520 -  94987271 I
e proCoq1.NW_012149775v1     134994 93 -   1411461 I
e canFam3.chr35            26354580 33005 +  26524999 T
e otoGar3.GL873550           285541 1316 +  18854210 I
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=39915.000000
s hg38.chr6_GL000254v2_alt  1454897 4 +   4827813 GAGG
s panTro5.chr6             30324257 4 + 175400573 GAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558706 4 + 173848474 GAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265692 4 +   2037526 GAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932724 4 + 122973662 GAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30812278 4 + 172585720 GAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101763 4 - 170955103 GAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350615 4 +   1495729 GAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450437 4 -    863181 GAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600710 4 -  71996105 GAGG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     239067 4 -   1829203 GAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30428206 4 + 171630274 GAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243463 4 +    515838 GAGG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     368736 4 -    383796 GAGG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           286857 4 +  18854210 GAAA
i otoGar3.GL873550         I 1316 C 0
s dasNov3.JH580105            30825 4 -     45298 GCGG
i dasNov3.JH580105         C 0 I 268
e micMur3.chr6               329643 1527 + 123392446 I
e mm10.chr17               58085688 1520 -  94987271 I
e proCoq1.NW_012149775v1     134994 93 -   1411461 I
e canFam3.chr35            26354580 33005 +  26524999 T
e cebCap1.NW_016107755v1     870838 9 -   1771730 I
e manLeu1.NW_012107142v1     293863 5867 -    735854 I

a score=117742.000000
s hg38.chr6_GL000254v2_alt  1454901 15 +   4827813 AGAACAAACTTCTAA
s panTro5.chr6             30324261 15 + 175400573 AGAACAAACTTCTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558710 15 + 173848474 AGAACAAACTTCTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265696 15 +   2037526 AGAACAAACTTCTAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932728 15 + 122973662 AGaacaaacttttaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30812282 15 + 172585720 AGAAGAAACATTTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101767 15 - 170955103 AGAAGAAACATTTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350619 15 +   1495729 AGAAGAAACATTTAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450441 15 -    863181 AGAACAAACTTTTAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600714 15 -  71996105 AGAACAAACTTTTAA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     239071 15 -   1829203 AGAACAAACATTTAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30428210 15 + 171630274 AGAACAAACTTATAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243467 15 +    515838 AGAACAAACTTTTAA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     368740 15 -    383796 AGaacaaacttttaa
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           286861 15 +  18854210 AGGATAAACTTTTAA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e mm10.chr17               58085688 1520 -  94987271 I
e dasNov3.JH580105            30829 268 -     45298 I
e proCoq1.NW_012149775v1     134994 93 -   1411461 I
e canFam3.chr35            26354580 33005 +  26524999 T
e cebCap1.NW_016107755v1     870838  9 -   1771730 I
e manLeu1.NW_012107142v1     293863 5867 -    735854 I

a score=33840.000000
s hg38.chr6_GL000254v2_alt  1454916 3 +   4827813 AAG
s panTro5.chr6             30324276 3 + 175400573 AAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558725 3 + 173848474 AAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265711 3 +   2037526 AAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932743 3 + 122973662 aag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30812297 3 + 172585720 AAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101782 3 - 170955103 AAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350634 3 +   1495729 AAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450456 3 -    863181 AAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600729 3 -  71996105 AAG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     239086 3 -   1829203 AAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30428225 3 + 171630274 AAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243482 3 +    515838 AAG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     368755 3 -    383796 aag
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           286876 3 +  18854210 AAG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            31097 3 -     45298 AAG
i dasNov3.JH580105         I 268 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e mm10.chr17               58085688 1520 -  94987271 I
e proCoq1.NW_012149775v1     134994 93 -   1411461 I
e canFam3.chr35            26354580 33005 +  26524999 T
e cebCap1.NW_016107755v1     870838 9 -   1771730 I
e manLeu1.NW_012107142v1     293863 5867 -    735854 I

a score=438391.000000
s hg38.chr6_GL000254v2_alt  1454919 43 +   4827813 CACCTACTACGTGCTCAGCTTTAAGCGAAATTATTAATTTATG
s panTro5.chr6             30324279 43 + 175400573 CACCTACTACGTGCTCAGCTTTAAGCGAAATTATTAATTTATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558728 43 + 173848474 CACCTACTACGTGCTCAGCTTTAAGCGAAATTATTAATTTATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265714 43 +   2037526 CACCTACTACATGCTCAGCTTTAAGCGAAATTATTAATTTATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932746 43 + 122973662 cacctattacgtgctcagctttaacagaaattattaatttatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30812300 43 + 172585720 CACCTACTAAGTGCTCAGCTTTAAGCGAAATTATTAATTTATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101785 43 - 170955103 CACCTACTAAGTGCTCAGCTTTAAGCGAAATTATTAATTTATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350637 43 +   1495729 CACCTACTAAGTGCTCAGCTTTAAGCGAAATTATTAATTTATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450459 43 -    863181 CACCTACTAAGTGCTCAGCTTTAAGCGAAATTATTAATTTATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600732 43 -  71996105 CACCTACTAAGTGCTCAGCTTTAAGTGAAATTATTAATTTATG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     239089 43 -   1829203 CACCTACTAAGTGCTCAGCTTTAAGCGAAATTATTAATTTATG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30428228 43 + 171630274 CATTTACTACATGCTCAGCTTTAGGCGAAATTATTAATTTGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243485 43 +    515838 CACTTACTACATGCTCAGCTTTAGGCGATATTATTAATTTATG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     368758 43 -    383796 cacttactacatgctcagctttaggagaaattattaatttaca
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     135087 43 -   1411461 CACTTACTATGTGCTCAGCTTTAGGCTAAATTGTTAATTTATG
i proCoq1.NW_012149775v1   I 93 I 979
s otoGar3.GL873550           286879 43 +  18854210 CACTTTATATGTTCTCAGCTTTAGGCTAAATTACTAATTTATG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            31100 41 -     45298 CCCTTACT--GTGCTCAGTTTCAGGCTAAACTATTTATTTACG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e mm10.chr17               58085688 1520 -  94987271 I
e canFam3.chr35            26354580 33005 +  26524999 T
e cebCap1.NW_016107755v1     870838  9 -   1771730 I
e manLeu1.NW_012107142v1     293863 5867 -    735854 I

a score=170879.000000
s hg38.chr6_GL000254v2_alt  1454962 22 +   4827813 GTTTACCA--CTTGCCTTCAAGGA
s panTro5.chr6             30324322 22 + 175400573 GTTTACCA--CTTGCCTTCAAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558771 21 + 173848474 GTTTACCA--CTTGCC-TCAAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265757 22 +   2037526 GTTTACCA--CTTGCCTTCAAGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932789 22 + 122973662 gtttacca--cttgccttcaagga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30812343 22 + 172585720 GTTTATTA--CTTGCCTTCAACGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101828 22 - 170955103 GTTTATTA--CTCGCCTTCAACGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350680 22 +   1495729 GTTTATTA--CTCGCCTTCAACGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450502 22 -    863181 GTTTATCA--CTTGCCTTCAAGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600775 22 -  71996105 GTTTATCA--CTTGCCTTCAAGGA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     239132 22 -   1829203 GTTTATCA--CTTGCCTTCAAGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30428271 22 + 171630274 GTTAATTA--TTTGCTTTCAAGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243528 22 +    515838 GTTAATCA--TTTGCCTTCGAAGA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     368801 22 -    383796 gttaatca--tttgccttcaagga
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           286922 24 +  18854210 TTTTATCATTTTTGCCTGCAAGGA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            31141 24 -     45298 TTTTATCACTTTTGCCTTCAAGAA
i dasNov3.JH580105         C 0 I 866
e micMur3.chr6               329643 1527 + 123392446 I
e mm10.chr17               58085688 1520 -  94987271 I
e proCoq1.NW_012149775v1     135130 979 -   1411461 I
e canFam3.chr35            26354580 33005 +  26524999 T
e cebCap1.NW_016107755v1     870838  9 -   1771730 I
e manLeu1.NW_012107142v1     293863 5867 -    735854 I

a score=736846.000000
s hg38.chr6_GL000254v2_alt  1454984  96 +   4827813 ----ACTGTCTAATACAATTCCAGAAGGCTTTTCAGTTTATAAT---CTTTCATATAGATTTTATTCCTTT-------------------------------------CACGCACACAGG------AAAATAGGTAA---------GTGGGGTCA
s panTro5.chr6             30324344  96 + 175400573 ----ACTGTCTAATACATTTCCGGAAGGCTTTTCGGTTTATAAT---CTTTCATATAGATTTTATTCCTTT-------------------------------------CACGCACGCAGG------AAAATAGGTAA---------GTGGGGTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558792  96 + 173848474 ----ACTGTCTAATACAATTCCAGAAGGCTTTTCAGTTTATAAT---CTTTCATATAGATTTTATTCCTTT-------------------------------------CACGCACACAGG------AAAATAGGTAA---------GTGGGGTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265779  96 +   2037526 ----ACTGTCTAATACATTTCCAGAAGGCTTTTCGGTTTATAAT---CTTTCATATAGATTTTATTCCTTT-------------------------------------CACGCACACAGG------AAAATAGGTAA---------GTGGGGTCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932811  96 + 122973662 ----actgtctaatACATTTCCAGAAGGCTTTTCAGTTTATAAT---CTTTCATATAGATTTTATTCCTTT-------------------------------------CACACACGCAGG------AAAATAGGTAA---------GTGGGGTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30812365  96 + 172585720 ----AGTGTCTAAtacatttccagaaggcttttcagtttataat---ctttcatatagattttatttctct-------------------------------------cacacacacagg------aaaataggtaa---------gtggggtca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30101850  96 - 170955103 ----AGTGTCTAATACATTTCCAGAAGGCTTTTCAGTTTATAAT---CTTTCATATAGATTTTATTTCTCT-------------------------------------CACACACACAGG------AAAATAGGTAA---------GTGGGGTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350702  96 +   1495729 ----AGTGTCTAATACATTTCCAGAAGGCTTTTCAGTTTATAAT---CTTTCATATAGATTTTATTTCTCT-------------------------------------CACACACACAGG------AAAATAGGTAA---------GTGGGGTCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450524  96 -    863181 ----AGTGTCTAATACATTTCCAGAAGGCTTTTCAGTTTATAAT---CTTTCATGTAGATTTTATTTCTCT-------------------------------------CACACACACAGG------AAAATAGGTAA---------GTGGGGTCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29600797  95 -  71996105 ----AGTGTCTAATACA-TTCCAGAAGGCTTTTCAGTTTATAAT---CTTTCATATAGATTTTATTTCTTT-------------------------------------CACATACACAGG------AAAATAGGTAA---------GTGGGGTCA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     239154  96 -   1829203 ----AGTGTCTAATACATTTCCAGAAGGCTTTTCAGTTTATAAT---CTTTCATATAGATTTTATTTCTTT-------------------------------------CACACACACAGG------AAAATAGGTAA---------GTGGGGTCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30428293 109 + 171630274 ACTGAGTGTCTAATGCATTTCCAGAAGGCTTTTCACTTTATAAT---CTTTCATATAGATTTTATTCCTTT-------------------------------------CACACACACAGG------AAAATAAGTAAAGGTGTTGGGTGGGGTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243550 109 +    515838 ACTGAGTGTCTGATACATTTCCAGAAGGCTTTTCACTTTATACT---CTTTCATATAGATTTTATTCCTTT-------------------------------------CACACACACAGG------AAAATAAGTAAAGGTGTTGGGTGGGGTCA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     368823 111 -    383796 actgagtgtctaatgCATTTCCAGAAGGCTTTTCAGTTTATAAT---CTATCATGTAGATTTTATTCCTTT-----------------------------------CACACACACACAGG------AAAGTAAGTAAAGGTGTTGGGTGGGGTCA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           286946 135 +  18854210 TCTGGGTGTCTAATACTCTTCCAGAAG---------TTTATAATATACTTTCGCGCAGATTT--TTCCTTTACTCCCCGCCCCCGCATCCCCCCCTCCCCCCCCTCCACACACACTCAGAGCAGGTAAAGAAGATAG---------ACAGCGTAA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e mm10.chr17               58085688 1520 -  94987271 I
e dasNov3.JH580105            31165 866 -     45298 I
e proCoq1.NW_012149775v1     135130 979 -   1411461 I
e canFam3.chr35            26354580 33005 +  26524999 T
e cebCap1.NW_016107755v1     870838   9 -   1771730 I
e manLeu1.NW_012107142v1     293863 5867 -    735854 I

a score=194945.000000
s hg38.chr6_GL000254v2_alt  1455080 37 +   4827813 CAATGTCTTCATtttccttctgtct---------------tttttttttttt
s panTro5.chr6             30324440 52 + 175400573 CAATGTCTTCATTTTCCTCCTGTCTCTCttttattttattttattttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558888 44 + 173848474 CAATGTCTTCATTTTCCTTCTGttc--------ttttttttttttttttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265875 46 +   2037526 CAATGTCTTCATTTTCCTTCTGTCT------CTCttttttttattttttatt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932907 44 + 122973662 CAATGTCTTCATTTTCCTTCTGTCT--------Ctttttttttttttttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30812461 37 + 172585720 caatgtcttcattttCCctctctct---------------ctctctctctct
i rheMac8.chr4             C 0 I 11
s macFas5.chr4             30101946 37 - 170955103 CAATGTCTTCATTTTCCctctctct---------------ctctctctctct
i macFas5.chr4             C 0 I 12
s macNem1.NW_012012100v1     350798 37 +   1495729 CAATGTCTTCATTTTCCctctctct---------------ctctctctctct
i macNem1.NW_012012100v1   C 0 I 12
s cerAty1.NW_012002535v1     450620 37 -    863181 CAATGTCTTCATTTTCCCTCTCTCT---------------CTCTCTCttttt
i cerAty1.NW_012002535v1   C 0 I 7
s chlSab2.chr17            29600892 37 -  71996105 CAATGTCTTCATTTtccctctctct---------------ctctctctcttt
i chlSab2.chr17            C 0 I 8
s colAng1.NW_012115577v1     239250 37 -   1829203 CAATGTCTTCATTTTCCCTCTCTCT---------------CTCTCttttttt
i colAng1.NW_012115577v1   C 0 I 8
s calJac3.chr4             30428402 45 + 171630274 CAATGTCTTCATTTTCTCTCTCTCt-------tttcttttttcttttttttc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243659 45 +    515838 CAATGTCTTCATtctctctctctct-------ctctctctctctctctctct
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     368934 32 -    383796 CAATGTCTTCAGtttctct--------------------ttttttttttttt
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e mm10.chr17               58085688 1520 -  94987271 I
e dasNov3.JH580105            31165 866 -     45298 I
e proCoq1.NW_012149775v1     135130 979 -   1411461 I
e canFam3.chr35            26354580 33005 +  26524999 T
e otoGar3.GL873550           287081  0 +  18854210 C
e cebCap1.NW_016107755v1     870838  9 -   1771730 I
e manLeu1.NW_012107142v1     293863 5867 -    735854 I

a score=201732.000000
s hg38.chr6_GL000254v2_alt  1455117 29 +   4827813 tttttg-agacagtctctcactctgtcact
s panTro5.chr6             30324492 29 + 175400573 tttttg-agacaggctctcactctgtcact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558932 30 + 173848474 tttttgtagacaggctctcactctgtcact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265921 29 +   2037526 tttttg-agacaggctctcactctgtcact
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932951 29 + 122973662 tttttg-aaacaggctctcactctgtcact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30812509 29 + 172585720 tctttg-agaaaggctctcactctgtcact
i rheMac8.chr4             I 11 C 0
s macFas5.chr4             30101995 29 - 170955103 tttttg-agaaaggctctcactctgtcact
i macFas5.chr4             I 12 C 0
s macNem1.NW_012012100v1     350847 29 +   1495729 tttttg-agaaaggctctcactctgtcact
i macNem1.NW_012012100v1   I 12 C 0
s cerAty1.NW_012002535v1     450664 29 -    863181 tttttg-agaaaggctctcactctgtcact
i cerAty1.NW_012002535v1   I 7 C 0
s chlSab2.chr17            29600937 29 -  71996105 tttttg-agaaaggctctcactctgtcact
i chlSab2.chr17            I 8 C 0
s manLeu1.NW_012107142v1     299730 29 -    735854 tttttg-agaaaggctctcactctgtcact
i manLeu1.NW_012107142v1   I 5867 C 0
s colAng1.NW_012115577v1     239295 29 -   1829203 tttttg-agaaaggctctcagtctgtcact
i colAng1.NW_012115577v1   I 8 C 0
s calJac3.chr4             30428447 28 + 171630274 tttttg-agacagggtctca-tctgtcact
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           243704 14 +    515838 ctctc----------------tctctctct
i saiBol1.JH378341         C 0 M 762
s aotNan1.NW_018496904v1     368966 29 -    383796 tttttg-aggcagggtctcactctgtcact
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e mm10.chr17               58085688 1520 -  94987271 I
e dasNov3.JH580105            31165 866 -     45298 I
e proCoq1.NW_012149775v1     135130 979 -   1411461 I
e canFam3.chr35            26354580 33005 +  26524999 T
e otoGar3.GL873550           287081  0 +  18854210 C
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=909382.000000
s hg38.chr6_GL000254v2_alt  1455146 129 +   4827813 caggctggagtgcagt-gcacgatcacggctcactgcagcctcatcctcccaggctcaaacaatactttcacctcccagcctctctagtagctgggactacaggcgtg-tgctaccacgcccggctagtt----t-----------------------------
s panTro5.chr6             30324521 129 + 175400573 caggctggagtgcagt-gcacgatcacggctcactgcagcctcatccttccaggctcaaacaatactttcacctcccagcctctctagtagctgggactacaggcgtg-tgctaccacgcccggctagtt----t-----------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30558962 129 + 173848474 caggctggagtgcagt-gcacgatcacggctcacagcagcctcatcctcccaggctcaaacaatactttcacctcccagcctctctagtagctgggactacaggcgtg-tgctaccacgcccgcctagtt----t-----------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     265950 129 +   2037526 caggctggagtgcagt-gcacgatcacggctcactgcagcctcatcctcccaggctcaaacaatactttcacctcccagcctctctagtagctgggactacaggcgta-tgctaccacgcccggctagtt----t-----------------------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74932980 129 + 122973662 caggctggagtgcagt-gcacgatcacggctcactgcagcctcatcctcccaggctcaaacaatactttcacctcccagcctctctagtagctgggactacaggcgtg-tgctaccacgcccggctagtt----t-----------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30812538 129 + 172585720 caggctggactgcagt-gcacgatcacggctcactgcagcctcaacctaccaggctcaaacaatactttcatctcccagtctctctagtagctgggacgacaggcctg-tgctaccacgccctgctagtt----t-----------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30102024 129 - 170955103 caggctggactgcagt-gcacgatcacggctcactgcagcctcaacctaccaggctcaaacaatactttcatctcccagtctctctagtagctgggacgacaggcctg-tgctaccacgccctgctagtt----t-----------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     350876 129 +   1495729 caggctggactgcagt-gcacgatcacggctcactgcagcctcaacctaccaggctcaaacaatactttcatctcccagtctctctagtagctgggacgacaggcctg-tgctaccacgcccggctagtt----t-----------------------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450693 129 -    863181 caggctggactgcagt-gcacgatcacggctcactgcagcctcaacccaccaggctcaaacaatactttcatctcccagtctctctagtagctgggacgacaggcctg-tgctaccacgcccggctagtt----t-----------------------------
i cerAty1.NW_012002535v1   C 0 I 28
s chlSab2.chr17            29600966 133 -  71996105 caggctggactgcagt-gcacgatcacggctcactgcagcctcaacctaccaggctcaaacaatactttcatctcccagtctctctagtagctgggacgataggcctg-tgctaccacgccgggctagtttttat-----------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     299759 129 -    735854 caggctggactgcggt-gcacgatcacggctcactgcagcctcaacccaccaggctcaaacaatactttcatctcccagtctctctagtagctgggacgacaggcctg-tgctaccacgcccagctagtt----t-----------------------------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     239324 129 -   1829203 caggccggactgcagt-gcacgatcacggctcactgcagcctcaacctaccaggctcaaacaatactttcatctcccagtctctctagtagctgggacgacaggcctg-tgctaccacgcccggctagtt----t-----------------------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30428475 158 + 171630274 gaggctggagtgcagtggcatgatcacggctcactgcagccttgacctcccaggcacaaacaatcctttcacct-ccagcctctggagtggctgggactacaggcgtg-ccccaccacgcccagcttttt----tctttttttctttcttttcttttcttttct
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1     368995 124 -    383796 gaggctggagtgcagtggcgtgatcacggctcactgccgccttaacctcccaggcacaaacaatcctttcacct-ccagcctctggagtagctgggactacaggcgtgaccccaccacgcccgac---------------------------------------
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e mm10.chr17               58085688 1520 -  94987271 I
e dasNov3.JH580105            31165 866 -     45298 I
e proCoq1.NW_012149775v1     135130 979 -   1411461 I
e canFam3.chr35            26354580 33005 +  26524999 T
e saiBol1.JH378341           243718 762 +    515838 M
e otoGar3.GL873550           287081   0 +  18854210 C
e cebCap1.NW_016107755v1     870838   9 -   1771730 I

a score=64143.000000
s hg38.chr6_GL000254v2_alt  1455275 15 +   4827813 tctttcttttttttt
s panTro5.chr6             30324650 15 + 175400573 tctttcttttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30559091 15 + 173848474 tctttcttttttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     266079 15 +   2037526 tctttcttttttttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74933109 15 + 122973662 ttctttttttttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30812667 15 + 172585720 ttttgtttgtttgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30102153 15 - 170955103 ttttgtttgtttgtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     351005 15 +   1495729 ttttgtttgtttgtt
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29601099 15 -  71996105 tttttattttttatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     299888 15 -    735854 ttttgtttgtttgtt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     239453 15 -   1829203 gtttgtttttttttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30428633 15 + 171630274 ttttttttttttttt
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496904v1     369119 12 -    383796 ---tttttttttttt
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e mm10.chr17               58085688 1520 -  94987271 I
e dasNov3.JH580105            31165 866 -     45298 I
e proCoq1.NW_012149775v1     135130 979 -   1411461 I
e canFam3.chr35            26354580 33005 +  26524999 T
e saiBol1.JH378341           243718 762 +    515838 M
e otoGar3.GL873550           287081  0 +  18854210 C
e cebCap1.NW_016107755v1     870838  9 -   1771730 I
e cerAty1.NW_012002535v1     450822 28 -    863181 I

a score=159296.000000
s hg38.chr6_GL000254v2_alt  1455290 33 +   4827813 ttaattaagaggagagtctctctatgttgccca
s panTro5.chr6             30324665 32 + 175400573 t-aatcaagaggagagtctcgctatgttgccca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30559106 31 + 173848474 --aatcaagaggagagtctcgctatgttgccca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     266094 32 +   2037526 t-aatcaagaggagagtctcgctatgttgccca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74933124 32 + 122973662 t-tattaagaggagagtctcgctatgtcgccca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30812682 29 + 172585720 ----tttagacgagagtctcgctatgttgccca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30102168 29 - 170955103 ----tttagacgggagtctcgctatgttgccca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     351020 29 +   1495729 ----tttagacgggagtctcgctatgttgccca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450850 33 -    863181 ttgttttaggcgagagtctcgctctgttgccta
i cerAty1.NW_012002535v1   I 28 C 0
s chlSab2.chr17            29601114 31 -  71996105 --ttcttagacgagagtctcgctctgttgccca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     299903 31 -    735854 --tttagacacgagagtctcgccatgttgccca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     239468 33 -   1829203 tttttttagacaagagtctcgctatgttgccca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30428648 33 + 171630274 tttttttAAACGAAGGTCTTGGTGTGTTCCCCA
i calJac3.chr4             C 0 I 3891
s aotNan1.NW_018496904v1     369131 33 -    383796 ttttttgagacgaaggtcttggtgcgttgccca
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e mm10.chr17               58085688 1520 -  94987271 I
e dasNov3.JH580105            31165 866 -     45298 I
e proCoq1.NW_012149775v1     135130 979 -   1411461 I
e canFam3.chr35            26354580 33005 +  26524999 T
e saiBol1.JH378341           243718 762 +    515838 M
e otoGar3.GL873550           287081  0 +  18854210 C
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=600545.000000
s hg38.chr6_GL000254v2_alt  1455323 82 +   4827813 ggctggtctcaaactcctgggctcaagcgatcctcagcctcccagagtgctgtgattactggcgtgagccaccgcgcccggc
s panTro5.chr6             30324697 82 + 175400573 ggctggtctcaaactcctgggctcaagcgatcctcagcctcccagagtgctgtgattactggcgtgagccaccgcgcccggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30559137 82 + 173848474 ggctggtctcaaactcctgggctcaagcgatcctcagcctcccagagtgctgtgattactggcgtgagccaccgcgccctgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     266126 80 +   2037526 ggctggtctcaaactcctgggctcaagcgatcctcagcctcccagagtgctgtgattactg--gtgagccaccgcgcccggc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74933156 82 + 122973662 ggctggtctcaaactcctgggctcaagtgatcctcagcctcccagagtgctgtgattactggcgtgaggcaccgcgcccggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30812711 82 + 172585720 ggctggtctcaaattactgggcttaagcgatcttcagcctcccagagtgctgtgattactggcgtgagccaccgcgcccggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30102197 82 - 170955103 ggctggtctcaaattactgggcttaagcgatcttcagcctcccagagtgctgtgattactggcgtgagccaccgcgcccggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     351049 82 +   1495729 ggctggtctcaaattactgggcttaagcgatcttcagcctcccagagtgctgtgattactggcgtgagccaccgcgcccggc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     450883 82 -    863181 ggctggtctcaaattactgggcttaagcaatcttcagcctcccagagtgctgtgattactggcgtgagccaccgcgccccgc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29601145 82 -  71996105 ggctggtctcaaattactgggcttaagcgatcttcagcctcccagagtgctgtgattactggcgtgagccaccacgcccggc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     299934 82 -    735854 ggctggtctcaaattactgggcttaagcgatcttcagcctcccagagtgctgtgattactggcgtgagccaccgcgcccggt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     239501 82 -   1829203 ggctggtctcaaattcctgggcttaagcgatcttcagcctcccagagtgctgtgattactggcgtgagccaccgcgcccggc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30432572 76 + 171630274 ggcaagtcttaaactcctggggtcaagcgat------cctcccagagccctgggattactggcgtgagccaccacactcggt
i calJac3.chr4             I 3891 C 0
s aotNan1.NW_018496904v1     369164 76 -    383796 ggctggtcttaaactccagggttcaagcgat------cctcccagagccctgggattactggcaagagccaccacgcccggt
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e mm10.chr17               58085688 1520 -  94987271 I
e dasNov3.JH580105            31165 866 -     45298 I
e proCoq1.NW_012149775v1     135130 979 -   1411461 I
e canFam3.chr35            26354580 33005 +  26524999 T
e saiBol1.JH378341           243718 762 +    515838 M
e otoGar3.GL873550           287081  0 +  18854210 C
e cebCap1.NW_016107755v1     870838  9 -   1771730 I

a score=1497543.000000
s hg38.chr6_GL000254v2_alt  1455405 214 +   4827813 cAATGTCTTCATTTTCTAATTGGGGAATCCGTTG--------------------------AGGGCGCAGCTCGGCCTTAAAAACCTGTACTTGCGATTCTAAGACCAGCGCGGGTTTTCCGTGCCCCACCTTGTCTGCCGGT---GGAGACTG-AGCAGTCAGCCCGCTGTAATA--GCGAGG-CCGACGCGGGAGGTGATGCCGCCTGGCCGGTCAGGTGCTGAGGCGCCG---------------AGGAGAGGACATGGC------------------------------------
s panTro5.chr6             30324779 214 + 175400573 cAATGTCTTCATTTTCTAATTGGGGAATCCGTTG--------------------------AGGGCGCAGCTCGGCCTTAAAAACCTGTACTTGCGATTCCAAGACCAGCGTGGGTTTTCCGTGCCCCACCTTGTCTGCAGGT---GGAGACTG-AGCAGTCAGCCCGCTGTAATA--GCGAGG-CCGACGCGGGAGGTGATGCCGCCTGGCGGGTCAGGTGCTGAGGCGCAG---------------AGGAGAGGACATGGC------------------------------------
i panTro5.chr6             C 0 I 77
s panPan2.chr6             30559219 214 + 173848474 cAATGTCTTCATTTTCTAATTGGGGAATCCGTTG--------------------------AGGGCGCAGCTCGGCCTTAAAAACCTGTACTTGCGATTCTAAGACCAGCGCGGGTTTTCCGTGCCCCACCTTGTCTGCCGGT---GGAGACTG-AGCAGTCAGCCCGCTGTAATA--GCGAGG-CCGACGCGGGAGGTGATGCCGCCTGGCGGGTCAGGTGCTGAGGCGCAG---------------AGGACAGGATATGGC------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     266206 214 +   2037526 cAATGTCTTCATTTTCTAATTGGGGAATCCGTTG--------------------------AGGGCGCAGCTCGGCCTTAAAAACCTGTACTTGCGATTCCAAGACCAGCGCGGGTTTTCCGTGCCCCACCTTGTCTGCAGGT---GGAGACTG-AGCAGTCAGCCCGCTGTAATA--GCGAGG-CCGACGCGGGAGGTGATGCCGCCTGGCGGGTCAGGTGCTGAGGCGCAG---------------AGGAGAGGACATGGC------------------------------------
i gorGor5.CYUI01015528v1   C 0 I 77
s nomLeu3.chr1a            74933238 214 + 122973662 cAATGTCTTCATTTTCTAATTGGGGAATCCATTG--------------------------AGGGCGCAGCTCGGCCTTAAAAACCTGTTCTTGCGATTCTAAGACCAGCGCGGGTTTTCCGTGCCCCACCTTGTCTGCAGGT---GGAGACTG-AGCAGTCAGCCCGCTGTAATA--GCGAGG-CCGACGCGGGAGGTGACGCCGCCTGGCGGGTCAGGTGCTGAGGCGCAG---------------AGGAGAGGACACGGC------------------------------------
i nomLeu3.chr1a            C 0 I 77
s rheMac8.chr4             30812793 205 + 172585720 cAATGTCTTCGTTTTCTAATTGGGGAATCCGCTG--------------------------AGGGCGCAACTGGGCCTTAAAAACCTGTACTTGGGATTCTAA---------GGGTTTTCCGTGTCCCACCTCGTCTGCAGAT---GGAGACTG-AGCAGTCAGCCCGCTGTGATA--ATGAGG-CCGACGCGGGAGGTGATGCCGCCTGGCGGGTCATGTGCTGAGGCGCAG---------------AGGAGAGGACATGGC------------------------------------
i rheMac8.chr4             C 0 I 72
s macFas5.chr4             30102279 205 - 170955103 cAATGTCTTCGTTTTCTAATTGGGGAATCCGCTG--------------------------AGGGCGCAACTGGGCCTTAAAAACCTGTACTTGGGATTCTAA---------GGGTTTTCCGTGTCCCACCTCGTCTGCAGAT---GGAGACTG-AGCAGTCAGCCCGCTGTGATA--ATGAGG-CCGACGCGGGAGGTGATGCCGCCTGGCGGGTCATGTGCTGAGGCGCAG---------------AGGAGAGGACAAGGC------------------------------------
i macFas5.chr4             C 0 I 72
s macNem1.NW_012012100v1     351131 205 +   1495729 cAATGTCTTCGTTTTCTAATTGGGGAATCCGCTG--------------------------AGGGCGCAACTGGGCCTTAAAAACCTGTACTTGGGATTCTAA---------GGGTTTTCCGTGTCCCACCTCGTCTGCAGAT---GGAGACTG-AGCAGTCAGCCCGCTGTGATA--ATGAGG-CCGACGCGGGAGGTGATGCCGCTTGGCGGGTCATGTGCTGAGGCGCAG---------------AGGAGAGGACAAGCC------------------------------------
i macNem1.NW_012012100v1   C 0 I 72
s cerAty1.NW_012002535v1     450965 205 -    863181 cAATGTCTTCGTTTTCTAATTGGGGAATCCGCTG--------------------------AGGGCGCAACTGGGCCTTAAAAACCTGTACTTGGGATTCTAA---------GGGTTTTCCGTATCCCACCTCGTCTGCAGAT---GGAGACTG-AGCAGTCAACCCGCTGTGATA--ACGAGG-CCGACGCGGGAGGTGATGCCGCCTGGCGGGTCATGTGCTGAGGCGCAG---------------AGGAGAGGACATGGC------------------------------------
i cerAty1.NW_012002535v1   C 0 I 72
s chlSab2.chr17            29601227 205 -  71996105 cAATGTCTTCATTTTCTAATTGGGGAATCCGCTG--------------------------AGGGCGCAGCCGGGCCTTAAAAACCTGTACTTGGGATTCTAA---------GGGTTTTCCGTGTCCCACCTCATCTGCAGAT---GGAGACTG-CGCAGTCAACCCGCTGTGATA--ACGAGG-CCGACGCGGGAGGTGATGCCGCCTGGCGGGTCATGTGCTGAGGCGCAG---------------AGGAGAGGACATGGC------------------------------------
i chlSab2.chr17            C 0 I 73
s manLeu1.NW_012107142v1     300016 205 -    735854 cAATGTCTTCGTTTTCTAATTGGGGAATCCGCTG--------------------------AGGGCGCAACTGGGCCTTAAAAACCTGTACTTGGGATTCTAA---------CGGTTTTCCGTGTCCCACCTCGTCTGCAGAT---GGAGACTG-AGCAGTCAGCCCGCTGTGATA--ACGAGG-CCAACGCGGGAGGTGATGCCGCCTGGCGGGTCATGTGCTGAGGCGCAG---------------AGGAGAGGACATGGC------------------------------------
i manLeu1.NW_012107142v1   C 0 I 72
s colAng1.NW_012115577v1     239583 205 -   1829203 cAATGTCTTCGTTTTCTAATTGGGGAATCCGCTG--------------------------AAGGCGCAACTGGGCCTTAAAAACTTGTACTTGGGATTCTAA---------GGGTTTTCCGTGTCCCATCTCGTCTGCAGAT---GGAGACTG-AGCAGTCAACCCGCTGTGATA--ACGAGG-CCGACGCGGGAGGTGATGTCGCCTGGCGGGTCATGTACTGAGGCGCAG---------------AGGAGAGGACATGGC------------------------------------
i colAng1.NW_012115577v1   C 0 I 73
s calJac3.chr4             30432648 210 + 171630274 caatg-tttcattttGTAGTTGGGGGATCCGCTG--------------------------AGGGCGCAGCTGTATCTT--AAACCTGAGCTTGCGATTCTAAGACCAGCG-CGGTTTGGCGTTCCCCACCTTGT-TGCAGGT---GGAGACCGAAGCAGCCAGCCCGCGTTAACA--GCGAGG-CCAACGCGGGAGGTGCTGCCGCCTGGCGGGTCAGGGGCTGAGGCACAG---------------AGGAGAGGACTTGGC------------------------------------
i calJac3.chr4             C 0 I 82
s aotNan1.NW_018496904v1     369240 212 -    383796 cAATGTTTTCATTTTGTAGTTGCGGGATCCGCTG--------------------------AGGGCGCAGCTGTATCTT--AAACCTGAGCTAGCGATTCTAAGACCAGCG-CGGTTTCCCGTTCCCCACCTTGTCTGCAGGC---GGAGACCGAAGCTGCCAACCCGCGGTAACA--GCGAGG-CCGACGCGGGAGGTGCTGCCGCCTGGCGGGTCAGGGGCTGGGACGCAG---------------AGGAGAGGACTCGGC------------------------------------
i aotNan1.NW_018496904v1   C 0 I 69
s otoGar3.GL873550           287081 282 +  18854210 CGGTGTCTTGGTTTTCTAACTGGGGAATCAGTCTCTAGCTATAATAGTAACCGCCTGGGCGGGGCGGAGCTGGGTCTT-AGAACCAATAC----GATACGAGGGC------GTGTT-----TACCCCACCTGGCGTGCAGGTGGAGGAGACAGAAGCAGCCGACCTGCTCCAACCATGCGAGGCCCGGCCAGGCGGGAGCTGCGGCGCGGCGGCTGAGCGGCGGGGACGTAGCCTCACTCGCCCGCCGGGTCCGGGTCAATCCAGCCTGCTCCCCGCCGTGCTCTACGCCACTCTTGC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e mm10.chr17               58085688 1520 -  94987271 I
e dasNov3.JH580105            31165 866 -     45298 I
e proCoq1.NW_012149775v1     135130 979 -   1411461 I
e canFam3.chr35            26354580 33005 +  26524999 T
e saiBol1.JH378341           243718 762 +    515838 M
e cebCap1.NW_016107755v1     870838   9 -   1771730 I

a score=271604.000000
s hg38.chr6_GL000254v2_alt  1455619 27 +   4827813 ----TCACTGGATCTTTTTCTGAGGGGTCAG
s panTro5.chr6             30325070 27 + 175400573 ----TCACTGGATCTTTTTCTGAGGGGTCAG
i panTro5.chr6             I 77 C 0
s panPan2.chr6             30559433 27 + 173848474 ----TCACTGGATCTTTTTCTGAGGGGTCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     266497 27 +   2037526 ----TCACTGGATCTTTTTCTGAGGGGTCAG
i gorGor5.CYUI01015528v1   I 77 C 0
s nomLeu3.chr1a            74933529 27 + 122973662 ----TCACTGGATCTTTTTCCGAGGGGTCAG
i nomLeu3.chr1a            I 77 C 0
s rheMac8.chr4             30813070 27 + 172585720 ----TCACTGGATCTTTTTCTGAGGGGTCAG
i rheMac8.chr4             I 72 C 0
s macFas5.chr4             30102556 27 - 170955103 ----TCACTGGATCTTTTTCTGAGGGGTCAG
i macFas5.chr4             I 72 C 0
s macNem1.NW_012012100v1     351408 27 +   1495729 ----TCACTGGATCTTTTTCTGAGGGGTCAG
i macNem1.NW_012012100v1   I 72 C 0
s cerAty1.NW_012002535v1     451242 27 -    863181 ----TCACTGGATCTTTTTCTGAGGGGTCAG
i cerAty1.NW_012002535v1   I 72 C 0
s chlSab2.chr17            29601505 27 -  71996105 ----TCACTGGATCTTTTTCTGAGGGGTCAG
i chlSab2.chr17            I 73 C 0
s manLeu1.NW_012107142v1     300293 27 -    735854 ----TCACTGGATCTTTTTCTGAGGGGTCAG
i manLeu1.NW_012107142v1   I 72 C 0
s colAng1.NW_012115577v1     239861 27 -   1829203 ----TCACCGGATCTTTTTCTGAGGGGTCAG
i colAng1.NW_012115577v1   I 73 C 0
s calJac3.chr4             30432940 27 + 171630274 ----TCATTGGGTCTTTTTCTGAGGAGTCAG
i calJac3.chr4             I 82 C 0
s cebCap1.NW_016107755v1     870847 27 -   1771730 ----TCACTGGGTGTTTTTCTGAGGGGTCAG
i cebCap1.NW_016107755v1   I 9 C 0
s aotNan1.NW_018496904v1     369521 27 -    383796 ----TTTCTGGGTCTTTTTCTGAGGGGTCAA
i aotNan1.NW_018496904v1   I 69 C 0
s otoGar3.GL873550           287363 31 +  18854210 TTTGCCACCGGGTCTTTTTCTGCCGGGTCAA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e mm10.chr17               58085688 1520 -  94987271 I
e dasNov3.JH580105            31165 866 -     45298 I
e proCoq1.NW_012149775v1     135130 979 -   1411461 I
e canFam3.chr35            26354580 33005 +  26524999 T
e saiBol1.JH378341           243718 762 +    515838 M

a score=643814.000000
s hg38.chr6_GL000254v2_alt  1455646 63 +   4827813 TGTAATAGGGG-ATTCCAGGAGCTTTGGCAGAGATGTTTCTGCTT--CCAGAGATCGTGGGATGGA
s panTro5.chr6             30325097 63 + 175400573 TGTAATAGGGG-ATTCCAGGAGCTTTGGCAGAGATGTTTCTGCTT--CCAGAGATCGTGGGATGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30559460 63 + 173848474 TGTAATAGGGG-ATTCCAGGAGCTTTGGCAGAGATGTTTCTGCTT--CCAGAGATCGTGGGATGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     266524 64 +   2037526 TGTAATAGGGGAATTCCAGGAGCTTTGGCAGAGATGTTTCTGCTT--CCAGAGATCATGGGATGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74933556 63 + 122973662 TGTAATGGGGG-ATTCCAGGAGCTTTGGCAGAGATGTTTCTGCTT--CCAGAGATCGTGGGATGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30813097 63 + 172585720 TGTAATAGGGG-ATTCCAGGAGCTTTGGCAGAGATGTTTCTGCTT--CCAGAGATGGTGGGATGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30102583 63 - 170955103 TGTAATCGGGG-ATTCCAGGAGCTTTGGCAGAGATGTTTCTGCTT--CCAGAGATGGTGGGATGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     351435 63 +   1495729 TGTAATCGGGG-ATTCCAGGAGCTTTGGCAGAGATGTTTCTGCTT--CCAGAGATGGTGGGATGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     451269 63 -    863181 TGTAATCGGGG-ATTCCAGGAGCTTTGGCAGAGATGTTTCTGCTT--CCAGAGATGGTGGGATGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29601532 63 -  71996105 TGTAATAGGGG-ATTCCAGGAGCTTTGGCAGAGATGTTTCTGCTT--CCAGAGATGGTGGGATGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     300320 63 -    735854 TGTAATCGGGG-ATTCCAGGAGCTTTGGCAGAGATGTTTCTGCTT--CCAGAGATGGTGGGATGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     239888 63 -   1829203 TGTAATAGGGA-ATTCCAGGAGCTTTGGCAGAGATGTTTCTGCTT--CCAGAGATGGTGGGATGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30432967 62 + 171630274 TGTAATAGGGG-ATTCCAAGAGCTTT-GCAGAGATGTTTCTGCTT--CCGGTGATCATGGGATGGA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     870874 63 -   1771730 TGTAATCAGGG-GTTCCAGGAGCTTTGGCAGAGATGTCTCTGCTT--CCGGAGATCACAGGATGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     369548 62 -    383796 TGTAATAGGGG-ATTCCAGGAGCTTTGGGAGAGATGTTTCTGCTT---CGGAGATCATGGGATGGA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           287394 63 +  18854210 CGTAACAAGAG-ATTCCAGGAGCTTCGGCAGAGACGTTTCTGCTT--CGGAGGACCGTGGGATGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58087208 65 -  94987271 TGTATAAAGGA-AGGCTAGGAGCTTCATCAGCAATGCCTCAGTTTCCCCAGAAGTGTTTGGAATGA
i mm10.chr17               I 1520 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e dasNov3.JH580105            31165 866 -     45298 I
e proCoq1.NW_012149775v1     135130 979 -   1411461 I
e canFam3.chr35            26354580 33005 +  26524999 T
e saiBol1.JH378341           243718 762 +    515838 M

a score=119508.000000
s hg38.chr6_GL000254v2_alt  1455709 10 +   4827813 G-TTTTTCTTA
s panTro5.chr6             30325160 10 + 175400573 G-TTTTTCTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30559523 10 + 173848474 G-TTTTTCTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     266588 10 +   2037526 G-TTTTTCTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74933619 10 + 122973662 G-TTTTTCTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30813160 10 + 172585720 G-TTTTTCTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30102646 10 - 170955103 G-TTTTTCTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     351498 10 +   1495729 G-TTTTTCTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     451332 10 -    863181 G-TTTTTCTTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29601595 10 -  71996105 G-TTTTTCTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     300383 10 -    735854 G-TTTTTCTTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     239951 10 -   1829203 G-TTTTTCTTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30433029 10 + 171630274 G-TTTTTCTTA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     870937 10 -   1771730 G-TTTTTCTTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     369610 10 -    383796 G-TTTTTCTTA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           287457 11 +  18854210 GTTTTTTCTTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58087273 10 -  94987271 G-CATTTCTTA
i mm10.chr17               C 0 C 0
s dasNov3.JH580105            32031 10 -     45298 G-CTGCTCTCA
i dasNov3.JH580105         I 866 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e proCoq1.NW_012149775v1     135130 979 -   1411461 I
e canFam3.chr35            26354580 33005 +  26524999 T
e saiBol1.JH378341           243718 762 +    515838 M

a score=120366.000000
s hg38.chr6_GL000254v2_alt  1455719 17 +   4827813 CCGTGAAGACATCGACC
s panTro5.chr6             30325170 17 + 175400573 CCGTGAAGACATCGACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30559533 17 + 173848474 CCGTGAAGACATCGACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     266598 17 +   2037526 CCGTGAAGACATCGACC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74933629 17 + 122973662 CCGTGAAGACATCGACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30813170 16 + 172585720 -TGTGAAGACCCGGACG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30102656 16 - 170955103 -TGTGAAGACCCGGACG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     351508 16 +   1495729 -TGTGAAGACCCGGACG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     451342 16 -    863181 -CGTGAAGACCCGGACG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29601605 16 -  71996105 -CGTGAAGACCCGGACG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     300393 16 -    735854 -CGTGAAGACCCGGACG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     239961 14 -   1829203 -CGTGAAGACCTGGA--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30433039 17 + 171630274 CCCTGAAGTCACGGATG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     870947 17 -   1771730 CCCCGAAGACACGGATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     369620 17 -    383796 CCCTAAAGACACGGATG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           287468 17 +  18854210 CCGTGAAGACAGCGATC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58087283 17 -  94987271 CCCTGAACGCCCAGATT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26321575 17 +  26524999 ctgtggaggtatccccc
i canFam3.chr35            T 33005 C 0
s dasNov3.JH580105            32041 17 -     45298 CCATGAAGACGTTGATC
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e proCoq1.NW_012149775v1     135130 979 -   1411461 I
e saiBol1.JH378341           243718 762 +    515838 M

a score=2693025.000000
s hg38.chr6_GL000254v2_alt  1455736 260 +   4827813 CTGTGTACACCTTGTGCCTTCACTTGTACTGTCTCCTTCTCCTTTTGCTGC----------------AAGACTTGGATCTGCTCTTGAATCTGCCCCTGCGGAAAGAGGG---------CCGTT-TGGACAGGCTGTGCCTGGAGATTTCT-GGCCTCATAAAATCCTCCTGGTCTCTTAGGAGAGCTGGTGACACTCTCCAGGTGAGTCCTTGTGTAATTATTAAG---------GACTCGCCTT--------TCTCAAGCTGGCGGGGAAAGGGGTTGCTGAGAAGGGAGAAATCTGGAGCC
s panTro5.chr6             30325187 260 + 175400573 CCGTGTACACCTTGTGCCTTCACTTGTACTGTCTCCTTCTCCTTTTGCTGC----------------AAGACTTGGATCTGCTCTTGAATCTGCCCCTGCGGAAAGAGGG---------CCGTT-TGGACAGGCTGTGCCTGGAGATTTCT-GGCCTCATAAAATCCTCCTGGTCTCTTAGGAGAGCTGGTGACACTCTCCAGGTGAGTCCTTGTGTAATTATTAAG---------GACTCGCCTT--------TCTCAAGCTGGCGGGGAAAGGGGTTGCTGAGAAGGGAGAAATCTGGAGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30559550 260 + 173848474 CTGTGTACACCTTGTGCCTTCACTTGTACTGTCTCCTTCTCCTTTTGCTGC----------------AAGACTTGGATCTGCTCTTGAATCTGCCCCTGCGGAAAGAGGG---------CCGTT-TGGACAGGCTGTGCCTGGAGATTTCT-GGCCTCATAAAATCCTCCTGGTCTCTTAGGAGAGCTGGTGACACTCTCCAGGTGAGTCCTTGTGTAATTATTAAG---------GACTCGCCTT--------TCTCAAGCTGGCGGGGAAAGGGGTTGCTGAGAAGGGAGAAATCTGGAGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     266615 259 +   2037526 CTGTGTACACCTTGTGCCTTCACTTGTACTGTCTCCTTCTCCTTTTGCTGC----------------AAGACTTGGATCTGCTCTTGAATCTGCCCCTGCGGAAAGAGGG---------CCGTT-TGGACAGGCTGTGCCTGGAGATTTCT--GCCTCATAAAATCCTCCTGGTCTCTTAGGAGAGCTGGTGACACTCTCCAGGTGAGTCCTTGTGTAATTATTAAG---------GACTCGCCTT--------TCTCAAGCTGGAGGGGAAAGGGGTTGCTGAGAAGGGAGAAATCTGGAGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74933646 259 + 122973662 CTGTGTACACCTTGTGCCTTCACTTGTACTGTCTCCTTCTCCTTTTGCTGC----------------AAGACTTGGATCTGCTCTTGAATCTGCCCCTGCGGAAAGAGGG---------CCGTT-TGGACAGGCTGTGCCTGGAGATTTCT-GGCCTCATAAAATCCTCCTGGTCTCTTAGGAGAGCTGGTGACACTCTCCAGGTGAGTCCTTGTGTAATTATTAAG---------GACTCGCCTT--------TCTCAAGCTGGC-GGGAAAGGGGTTGCTGGGAAGGGAGAAATCTGGAGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30813186 246 + 172585720 CTGTGTACACCTTGTGCCTTCACTTGTACTGTCTC---CTCCTTTTGCTGC----------------AAGACTTGGA------------TCTGCCCCTGCGGAGAGAGGG---------CCGTT-TGGGCAGGCTGTGCCTGGAGATTTCTGGGCCTCATTAAATCCTCCTGGTCTCTTAGGAGAGTGGGTAACACTCTCCAGGTGAGTCCTTGTGTAATTATTAAG---------GACTCGCCGT--------TCTCAAGCTGGTGGGGAAAGGGGTTGCTGGGAAGGGAGAAATCTGGAGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30102672 246 - 170955103 CTGTGTACACCTTGTGCCTTCACTTGTACTGTCTC---CTCCTTTTGCTGC----------------AAGACTTGGA------------TCTGCCCCTGCGGAGAGAGGG---------CCGTT-TGGGCAGGCTGTGCCTGGAGATTTCTGGGCCTCATTAAATCCTCCTGGTCTCTTAGGAGAGTGGGTAACACTCTCCAGGTGAGTCCTTGTGTAATTATTAAG---------GACTCGCCGT--------TCTCAAGCTGGTGGGGAAAGGGGTTGCTGGGAAGGGAGAAATCTGGAGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     351524 246 +   1495729 CTGTGTACACCTTGTGCCTTCACTTGTACTGTCTC---CTCCTTTTGCTGC----------------AAGACTTGGA------------TCTGCCCCTGCGGAGAGAGGG---------CCGTT-TGGGCAGGCTGTGCCTGGAGATTTCTGGGCCTCATTAAATCCTCCTGGTCTCTTAGGAGAGTGGGTAACACTCTCCAGGTGAGTCCTTGTGTAATTATTAAG---------GACTCGCCGT--------TCTCAAGCTGGTGGGGAAAGGGGTTGCTGGGAAGGGAGAAATCTGGAGCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     451358 261 -    863181 CTGTGTACACCTTGTGTCTTCACTTGTACTGTCTCCTTCTCCTTTTGCTGC----------------AAGACTTGGATCTGCTCTTGAGTCTGCCTCTGCGGAGAGAGGG---------CCGTT-TGGGCGGGCTGTGCCTGGAGATTTCTGGGCTTGATTAAATCCTCCTGGTCTCTTAGGAGAGTGGGTAACACTCTCCAGGTGAGTCCTTGTGTAATTATTAAG---------GACTCGCCTT--------TCTCAAGCTGGTGGGGAAAGGGGTTGCTGGGAAGGGAGAAATCTGGAGCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29601621 258 -  71996105 CTGTGTACACCTTGTGTCTTCACTTGTACTGTCTC---CTCCTTTTACTGC----------------AAGACTTGGATCTGCTCTTGAGTCTGCCCCTGCGGAGAGAGGG---------CCGTT-TGGGCAGGCTGTGTCTGGAGATTTCTGGGCCTCATTAAATCCTCCTGGTCTCTTAGGAGAGCGGGTAACACTCTCCAGGTGAGTCCTTGTGTAATTATTAAG---------GACTCGCCGT--------TCTCAAGCTGGTGGGGAAAGGGGTTACTGGAAAGGGAGAAATCTGGAGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     300409 258 -    735854 CTGTGTACACCTTGTGTCTTCACTTGTACTGTCTC---CTCCTTTTGCTGC----------------AAGACTTGGATCCGATCTTGAGTCTGCCTCTGCGGAGAGAGGG---------CCGTT-TGGGCGGGCTGTGCCTGGAGATTATTGGGCCTCATTAAATCCTCCTGGTCTCTTAGGAGAGTGGGTAACACTCTCCAGGTGAGTCCTTGTGTAATTATTAAG---------AACTCGCCTT--------TCTCAAGCTGGTGGGGAAAGGGGTTGCTGGGAAGGGAGAAATCTGGAGCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     239975 261 -   1829203 GTGTGTACAccttgtgcctgtacttgtactgtctccttctccttTTGCTGA----------------AAGATTTGGATCTGCTCTTGAGTCTGCCCCTGCGGAGAGAGGG---------CCGTT-TGGGCAGGCTGTGCCTGGAGATTTCTGGGCCTCATTAAATCCTCCTGGTCTCTTAGGAAAGCAGGTAACACTCTCCAGGTGAGTCCTGGTGTAATTATTAAG---------GACTTGCCGT--------TCTCAAGCTGGTGGGGAAAGGGGTTGCTGGGAAGAGAGAAATCTGGAGCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30433056 256 + 171630274 CTCTGTTCGCC-TGTGCCTTCACTTGTACCGTCTC---CTCCTTTGGCTGT----------------AAGACTTCCATCTGCGCTTGACTCTGCCCCTGCGGAGAGAGGG---------CCGTT-TGAGCAGGCTGTGCCTGGTGATTTCTGGGCCTCATAAAATCCTCCTGGTCTCTTAGGAGAGCATGTGACACTCTCCAGGTGAGTCCTTGTGTAATTATTAAG---------GACCCGCCTT--------TCTCAAGCTGG-GGGAAAAGGGGTGGCTGGGAAGGAAGAAGTCTGGAGCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           244482 253 +    515838 CTCTGTTCGCCTTGTGCCTTCACTTGCACCGT------CTCCTTTTGCTGT----------------AAAACTTCGATCTGCGCTTGGCTCTGCCGCTGCAGAGAGAGGG----------CGTT-TGGGCAGGCTGTGCCTGGTGATTTCTGGGCCTCATAAAATCCTCCTGGACTCTTAGGAGAGCACGTGACACTCTCCAGGTGAGTCCTTGTGTAATTATTAAG---------AACTCGACTT--------TCTCAAGCTGG-GGGAAAAAGGGTTGCTGGGAAGGTAGAAATCTGGAGCC
i saiBol1.JH378341         M 762 C 0
s cebCap1.NW_016107755v1     870964 255 -   1771730 CTCTGTTCGCCTTGTGCCTTCATTTGTACGGTCT----CTCCTTTTGCTGT----------------AAGACTTCAATCTGCGCTTGACTCTGCCCCTGCAGAGAGAGGG---------CCGTTCCGCGCAGGCTGTGCCTGGTGATTTCTGGGCCTCATAAAATCCTCC-GGTCTCTTAGGAGAGCACGTGACACTCTCCAGGTGAGTCCTTGTGTAATTATTAAG---------GACTCGCCTT--------TCTCAAACTGG-GGGAAAAGGGGTTGCT-GGCAGGAGGAAATCTGGAGCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     369637 260 -    383796 CTCTGTTCGCCTTGTGCCTTAACTTGTACCGTCTCCTTCTCCTTTTGCTGT----------------AAGACTTCGATCTGCGCTTGACTCTGACCCTGCGGAGAGAGGG---------CCGTT-TGGGCAGGCTGTGCCTGGTGATTTCTGGGCCTCATAAAATCCTCCTGGTCTCTTAGGAGAGCATGTGACACTCTCCGGGTGAGGCCTTGTGTAATTATTAAG---------GACTCGCCTT--------TCTCAAGCTGG-GGGAAAAGGGGTTGCTGGGAAGGAAGAAATCTGGAGCC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           287485 242 +  18854210 CTCTCTTCGCCCTGCGCCTTCACTTGCACTATCTC---CTCCTTTTGCTGT----------------AAGACCTGGATCTGCGATCGG-TCTGCCTCTGTGGGAAGAGGG---------CCGTT-TGGGCAGGCTGTGCTGGGAGATTTCTGGGCCTCGTAAAACGTTCCGGGTGTCTCAGGAGA-----------CCTCTAG----------GTGTGATTATTAATACACACCCCGCCCACCCTT--------TCCCAAA---GGGGAGCATGGTGCTTCTGGGAAGGGAGAAATCTGGAGCC
i otoGar3.GL873550         C 0 I 127
s mm10.chr17               58087300 222 -  94987271 GCCCCTTCACCTTGTTTTTTCTCTTCAATTATTTTCTTGTCCTTTTGCCCC----------------AAATCTTGGGCCTGTGACTCAATCTGCACCTGTAAGGAGAGGG---------TGCTT-CAGCCAGGCTCTGAC-----------------------------------TCTTGAGAG-GCAGGGAAGATGTTCCAGG---GTACTGATGTCATTATTAGC---------AGTCCTCCCTGGCCCCCATCTCTCGATAG--GAACAAGGAGGTGATGGAAAGAAA------TGGAACT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26321592 250 +  26524999 -----ccccccccgcccccccgcctttgctctcctgctctctctttctctcaaaTCCAAGTGAAAAGAAGACCTCGGTCCA---GTGAAACTGCCCCTGTGTGGAG---------------GCA-TTGGCAAGCCTTGCCTACAGGTCTGAGGGCTTCCTGGCAGTGTCTGGATCTCTCAGGACGGTGGTAAGCTCGCCC---GTAGGTCATGCTCTGATTATTAAT---------GGA---------------GCCCACGCTGG---AGGTAGGGTGTGAGGGTCAGGGAGACATCTGCAGCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            32058 214 -     45298 TTCTGTTCACCTTGGGCCTTCACCTGGCTGATGGCCTTTTCCTTCTGCTGC----------------AATACCTCAATCTTCGCCTGAATCTGCCCCTGGGGGGGGGGGGGGGGAGAGGGCATT-TGGGCAAGCTGC-CCGGGAGA------GGCAC----GAGTTCCCTTGACCTCTCAGGGG----------------CGGGTGAG----------ACTGCCGAG---------GGC---------------T-----------GGGGCGGCGGGTGGCAGAGCAGAGGGAGGA-TGGCTTT
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e proCoq1.NW_012149775v1     135130 979 -   1411461 I

a score=129041.000000
s hg38.chr6_GL000254v2_alt  1455996 13 +   4827813 ----TAAGTGA------------------CCTAAA
s panTro5.chr6             30325447 13 + 175400573 ----TAAGTGA------------------CCTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30559810 13 + 173848474 ----TAAGTGA------------------CCTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     266874 13 +   2037526 ----TAAGTGA------------------CCTAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74933905 13 + 122973662 ----TAAGTGA------------------CCTAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30813432 13 + 172585720 ----TGAGTGA------------------CCTAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30102918 13 - 170955103 ----TGAGTGA------------------CCTAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     351770 13 +   1495729 ----TGAGTGA------------------CCTAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     451619 13 -    863181 ----TGAGTGA------------------CCTAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29601879 13 -  71996105 ----TAAGTGA------------------CCTAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     300667 13 -    735854 ----TGAGTGA------------------CCTAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     240236 13 -   1829203 ----TAAGTGA------------------CCTAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30433312 13 + 171630274 ----TAAGTGA------------------CCTAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           244735 13 +    515838 ----CAAGTGA------------------CCTAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     871219 13 -   1771730 ----TAAGTGA------------------CCTAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     369897 13 -    383796 ----TAAGTGA------------------CCTAAA
i aotNan1.NW_018496904v1   C 0 I 13
s otoGar3.GL873550           287854 31 +  18854210 ----taagcgatttctcttgtctcaggctcccaag
i otoGar3.GL873550         I 127 I 16
s mm10.chr17               58087522 11 -  94987271 ----TTAGTGA------------------CTTG--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26321842 13 +  26524999 ----CAAGGGT------------------CCTACA
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            32272 13 -     45298 CACGTGAGTGA------------------TG----
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e proCoq1.NW_012149775v1     135130 979 -   1411461 I

a score=1026718.000000
s hg38.chr6_GL000254v2_alt  1456009 120 +   4827813 TGACCA-----------------------------------------------------------------------------------------------------------GAACATAGTTATTTATGACTAAC--T-------AGGACTAtg--gatggtgctttg-----g-aattatcaaagaa---ctacaaacttcccttcatctgtcctaccaacaac-tttaagagagttgttttgttt
s panTro5.chr6             30325460 120 + 175400573 TGACCA-----------------------------------------------------------------------------------------------------------GAACATAGTTATTTATGACTAAC--T-------AGGACTAtg--gatggtgctttg-----g-aattatcaaagaa---ctacaaacttcccttcatctgtcctaccaacaac-tttaagagagttgttttgttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30559823 120 + 173848474 TGACCA-----------------------------------------------------------------------------------------------------------GAACATAGTTATTTATGACTAAC--T-------AGGACTAtg--gatggtgctttg-----g-aattatcaaagaa---ctacaaacttcccttcatctgtcctaccaacaac-tttaagagagttgttttgttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     266887 120 +   2037526 TGACCA-----------------------------------------------------------------------------------------------------------GAACATAGTTATTTATGACTAAC--T-------AGGACTAtg--gatggtgctttg-----g-aattatcagagaa---ctacaaacttcccttcatctgtcctaccaacaac-tttaagagagttgttttgttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74933918 120 + 122973662 TGACCA-----------------------------------------------------------------------------------------------------------GAACATACTTATTTATGACTAAC--T-------AGGACTAtg--gatggtgctttg-----g-aattatcaaagaa---ctacaaacttcccttcatctgtcctaccaacaac-tttaagagagatgttttgttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30813445 123 + 172585720 TGACCA-----------------------------------------------------------------------------------------------------------GAACATGGTTATTTATGACTAAC--T-------AGGACTAtg--gatggtgctttg-----g-aattatcaaagaactcctacaaacttgccttcatctgtcttacctacaac-tttaagagagatgctttgttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30102931 123 - 170955103 TGACCA-----------------------------------------------------------------------------------------------------------GAACATGGTTATTTATGACTAAC--T-------AGGACTAtg--gatggtgctttg-----g-aattatcaaagaactcctacaaacttgccttcatctgtcttacctacaac-tttaagagagatgctttgttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     351783 123 +   1495729 TGACCA-----------------------------------------------------------------------------------------------------------GAACATGGTTATTTATGACTTAC--T-------AGGACTAtg--gatggtgctttg-----g-aattatcaaagaactcctacaaacttgccttcatctgtcttacctacaac-tttaagagagatgctttgttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     451632 122 -    863181 TGACCA-----------------------------------------------------------------------------------------------------------GAACATGGTTATTTATGACTAAC--T-------AGGACTAtg--gatggtgctttg-----g-aattatcaaagaactcctacaaacttcccttcatctgtcttaccaacaac--ttaagagagatgttttgttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29601892 123 -  71996105 TGACCA-----------------------------------------------------------------------------------------------------------GAACATGGTTATTTATGACTAAC--T-------AGGACTAtg--gatggtgctttg-----g-aattatcaaagaactcctacaaacttgccttcatctgtcttaccaacaac-tttaagagagatgttttgttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     300680 123 -    735854 TGACCA-----------------------------------------------------------------------------------------------------------GAACATGGTTATTTATGACTAAC--T-------AGGACTAtg--gatagtgctttg-----g-aattatcaaacaactcctacaaacttcccttcatctgtcttacctacaac-tttaagagagatgttttgttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     240249 123 -   1829203 TGACCA-----------------------------------------------------------------------------------------------------------GAACATGGTTATTTATGACTAAC--T-------AGGACTAtg--gatggtgctttg-----g-aattatcaaagaactcctacaaacttcccttcatctgtcttaccaacaac-tttaagagagatgttttgttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30433325 121 + 171630274 CGAACA-----------------------------------------------------------------------------------------------------------GAACACGGTTATTTATGACTAACTAT-------GAAGCTATG--AATGGTGCTTTG-----G-GATTATC----AACCCCTACGCACTTCCCTtcatctgtcctaccaacaac-tttaagggagatgttttgttt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           244748 119 +    515838 TGAACA-----------------------------------------------------------------------------------------------------------GAACATGGTTTTTTATGAC------C-------GAGACTAtg--gatggtgctttg-----g-gattatcaaagaactcctacccacttcccttcatctgccctaccaacaac-tttaagggagatgttttgttt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     871232 119 -   1771730 CGAACA-----------------------------------------------------------------------------------------------------------GAACATGGTTTTTTATGAC------T-------GAGACTAtg--gatggtgctttg-----g-gattatcaaagaactcctacccacttcccttcatctgtcctaccaacaac-tttaagagagatgttttgttt
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           287901 241 +  18854210 tgcccggctgtttcttgttgttgttgtaattgtcgttattgtttagctggcccgggtgcacctccaccctcagcgtatgtggctggcgccttaagcactgagctatgggtgctgagccTGGATGTTTGTTATTTAA--TGACTGTGAGGACTATGTAGATGGCGCTTTGTTTTAG-AGTTATCAAACAATTCCTACAC-CCTCCCctcatctgtcctaccaacaac-ttttagaaa--tgttttgttt
i otoGar3.GL873550         I 16 C 0
s mm10.chr17               58087533 102 -  94987271 -----A-----------------------------------------------------------------------------------------------------------GAAAATA-CTACTAATGATCATT--T---------------G--GATGGCGCTTTG-----G-TATTCTCAGGGGA-------AGACTTCTCCTCATCCGTCCTATCACATTC-TTTAAGAGATAGGTTTCATCT
i mm10.chr17               C 0 I 643
s canFam3.chr35            26321855  77 +  26524999 ------------------------------------------------------------------------------------------------------------------------------------------------------------AGACGGTGGTGTC-----G-TCCTA------AATTAGTACTAAt---acctcatgtatcatcccagcaccccttaagaggtatgtgatgttt
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            32285  95 -     45298 ------------------------------------------------------------------------------------------------------------------------------------TGAC--C-------GAAACC-TG--GATGGAGCTTTG-----ATTATTATCAAACAGCTCCCACCAGCAT---TTCAGCTGTCCCCCAGCAGAC-TCCAAGAGGTAAGTTTTGTTT
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e proCoq1.NW_012149775v1     135130 979 -   1411461 I
e aotNan1.NW_018496904v1     369910  13 -    383796 I

a score=162299.000000
s hg38.chr6_GL000254v2_alt  1456129 16 +   4827813 ttgccat--ttgaaaggt
s panTro5.chr6             30325580 16 + 175400573 ttgccat--ttgaaaggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30559943 16 + 173848474 ttgccat--ttgaaaggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     267007 16 +   2037526 ttgccat--ttgaaaggt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74934038 16 + 122973662 ttgccat--ttgaaaggt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30813568 16 + 172585720 ttgccat--ttgaaaggt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30103054 16 - 170955103 ttgccat--ttgaaaggt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     351906 16 +   1495729 ttgccat--ttgaaaggt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     451754 16 -    863181 ttgccat--ttggaaggt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29602015 16 -  71996105 ttgccat--ttgaaaggt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     300803 16 -    735854 ttgccat--ttgaaaggt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     240372 16 -   1829203 ttgccat--tttagaggt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30433446 16 + 171630274 ttgccat--ttgaaaggt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           244867 16 +    515838 ccgccat--ttgaaaggt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     871351 16 -   1771730 ctgccat--ttgaaaggt
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           288142 16 +  18854210 gcaccat--ttgaaagac
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26321932 16 +  26524999 --gccacgagtgaaagct
i canFam3.chr35            C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e mm10.chr17               58087635 643 -  94987271 I
e dasNov3.JH580105            32380  0 -     45298 C
e proCoq1.NW_012149775v1     135130 979 -   1411461 I
e aotNan1.NW_018496904v1     369910 13 -    383796 I

a score=890817.000000
s hg38.chr6_GL000254v2_alt  1456145 79 +   4827813 gaggtacctgaggctcagagaggtaaagtgattccttgcaggttgtacagtaaactcacaagactgggcttgagcccaa
s panTro5.chr6             30325596 79 + 175400573 gaggtacctgaggctcagagaggtaaagtgattccttgcaggttgtacagtaaactcacaagactgggcttgagcccaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30559959 79 + 173848474 gaggtacctgaggctcagagaggtaaagtgattccttgcaggttgtacagtaaactcacaagactgggcttgagcccaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     267023 79 +   2037526 gaggtacctgaggctcagagaggtaaagtgattccttgcaggttgtacagtaaactcacaagactgggcttgagcccaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74934054 79 + 122973662 gaggtacctgaggctcagagaggtaaagtgattccttgcagggtgtacagtaaactcacaagactggacttgagcccaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30813584 79 + 172585720 gagatacctgaggttcagagaggtaaagtgattccttgcaggttgtacagtaaactcacaagacgggacttgagcccaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30103070 79 - 170955103 gagatacctgaggttcagagaggtaaagtgattccttgcaggttgtacagtaaactcacaagacgggacttgagcccaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     351922 79 +   1495729 gagatacctgaggttcagagaggtaaagtgattccttgcaggttgtacagtaaactcacaagatgggacttgagcccaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     451770 79 -    863181 gagatacctgaggttcagagaggtaaagtgattccttgcaggttgtacagtaaactcacaagactggacttgagcccaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29602031 79 -  71996105 gacatacctgaggttcagagaggtaaagtgattccttgcaggttgtacagtaaactcacaagacgggacttgagcccaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     300819 79 -    735854 gagatacctgaggttcagagaggtaaagtgattccttgcaggttgtacagtaaactcacaagactggacttgagcccaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     240388 79 -   1829203 gagatacctgaggttcagagaggtcaagtgattccttgcaggttgcacagtaaactcacaagactggacttgagcccaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30433462 79 + 171630274 gaggtacctgaggctcagagaggtgaagtgattccttacaggttacacagtaaactcaggagactgaacttgagcccaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           244883 78 +    515838 gaggtacctgaggctcagagaggtaaagtgatt-cttgcaggttgcacagtaaactcaggagactgaatttaagcccaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     871367 78 -   1771730 gaggtaactgaggctcagagaggtaaagtgatt-cttgcaggttgcacagcaaactcaggaaactgaacttaagcccaa
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     136109 78 -   1411461 gaggcacctgaggcccagagaggtaaagtgcttcctggaagattgtacagtaaactcagg-gtctggacctgagcccaa
i proCoq1.NW_012149775v1   I 979 C 0
s otoGar3.GL873550           288158 68 +  18854210 gaggcacttgaggccctgagaggt----------ctggaaggttgtacaataaacttaggagtctagacttgaa-ccaa
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26321948 71 +  26524999 -gagcactggagcctcagaga-------tgagtcctcaaaggtcatgcagtaaactcaggagtctgaccttgagcccaa
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            32380 58 -     45298 -----------GCCCCAGAGA----------CTCCTGGGGGGCCACTTGGTGAGCCCCGGAGCCTGGACTTGAGCCCAA
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e mm10.chr17               58087635 643 -  94987271 I
e aotNan1.NW_018496904v1     369910 13 -    383796 I

a score=1933121.000000
s hg38.chr6_GL000254v2_alt  1456224 188 +   4827813 accttctgagtcaaattttcacatcc-------------tttccattCTCCATTGC-ACCTTGATTTAG--AGAGTCAGCAGTT-------------CCCCAGACTCAGCTCTTTGAACC----------CACTGTGCCTGACTGCGAGCTGCCCACTCAAGCCCAAG-----GGGTG-GGGGCAATGGGGTGCAAACCCTCAGTGGGAAGGTAGCAGTTTCCAGGGCCTCAC
s panTro5.chr6             30325675 188 + 175400573 accttctgagtcaaattttcacatcc-------------tttccattctccattgc-ACCTTGATTTAG--AGAGTCAGCAGTT-------------CCCCAGACTCAGCTCTTTGAACC----------CACTGTGCCTGACTGCGAGCTGCCCACTCAAGCCCTAG-----GGGTG-GGGGCAATGGGGTGCAAACCCTCAGTGGGAAGGTAGCAGTTTCCAGGGCCTCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30560038 188 + 173848474 accttctgagtcaaattttcacatcc-------------tttccattCTCCATTGC-ACCTTGATTTAG--AGAGTCAGCAGTT-------------CCCCAGACTCAGCTCTTTGAACC----------CACTGTGCCTGACTGCGAGCTGCCCACTCAAGCCCTAG-----GGGTG-GGGGCAATGGGGTGCAAACCCTCAGTGGGAAGGTAGCAGTTTCCAGGGCCTCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     267102 187 +   2037526 accttctgagtcaaattttcacatcc-------------tttccattctccattgc-ACCTTGATTTAG--AGAGTCAGCAGTT-------------CCCCAGACTCAGCTCTTTGAACC----------CACTGTGCCTGACTGCGAGCTGCCCACTCAAGCCCAAG-----GGGTG-GGGGCGAT-GGGTGCAAACCCTCAGTGGGAAGGTAGCAGTTTCCAGGGCCTCAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74934133 188 + 122973662 accttctgagtcaaattttcacatcc-------------tttccattTTCCATTGC-ACCTTGATTTAG--AGAGTCAGTAGTT-------------CCCCAGATTCAGCCCTTTGAACC----------CACTGTGCCTGACTGCGAGCTGCCCACTCAAGCCCAAG-----GGGTG-GGGGCAATGGGGTGCAAACCCTCAGTGGGAAGGTAGTAGTTTCCAGGGCCTCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30813663 185 + 172585720 accttctgagtcaaattttcacatcc-------------tttccattctccattgt-gccttgATTT----AGAGTCAGCAGTT-------------CCCCAAACTCAGCTCTTTGAACC----------CACTGTGCCTGACTGCGAGCTGCCCATTCAAGCCCAAA-----GGGCG-GGG-CAATGAGGTGCAAACCGTCAGTGGGAAGGTAGCGGTTTCCGGGGCCTCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30103149 187 - 170955103 accttctgagtcaaattttcacatcc-------------tttccattctccattgt-gccttgATTT----AGAGTCAGCAGTT-------------CCCCAGACTCAGCTCTTTGAACC----------CACTGTGCCTGACTGCGAGCTGCCCACTCAAGCCCAAA---GGGGGGG-GGG-CAATGAGGTGCAAACCCTCAGTGGGAAGGTAGCGGTTTCCGGGGCCTCAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     352001 190 +   1495729 accttctgagtcaaattttcacatcc-------------tttccattctccattgt-gccttgATTT----AGAGTCAGCAGTT-------------CCCCAGACTCAGCTCTTTGAACC----------CACTGTGCCTGACTGCGAGCTGCCCACTCAAGCCCAAAGGGGGGGGGG-GGG-CAATGAGGTGCAAACCCTCAGTGGGAAGGTAGCGGTTTCCGGGGCCTCAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     451849 185 -    863181 accttctgagtcaaattttcacatcc-------------tttccattctccattgc-GCCTTGATTT----AGAGTCAGCAGTT-------------CCCCAGACTCAGCTCTTTGAACC----------CACTGTGCCTGACTGCAAGCTGCCCACTCAAGCCCAAA-----GTGGG-GGG-CAATGAGGTGCAAACCCTCAGTGGGAAGGTAGCGGTTTCCGGGGCCTCAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29602110 186 -  71996105 accttctgagtcaaattttcacatcc-------------tttccattctccattgc-gccttgATTT----AGAGTCAGCAGTT-------------CCCCAGACTCAGCTCTTTGAACC----------CACTGTGCCTGACTGCGAGCTGCCCACTCAAGCCCAAA-----GGGGG-GGGACAATGAGGTGCAAACCCTCAGTGGGAAGGTAGTGGTTTCCAGGACCTCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     300898 185 -    735854 accttctgagtcaaattttcacatcc-------------tttccattctccattgt-gccttgATTT----AGAGTCAGCAGTT-------------CCCCAGACTCAGCTCTTTGAACC----------CACTGTGCCTGACTGCGAGCTGCCCACTCAAGCCCAAA-----GTGGG-GGT-CAATGAGGTGCAAACCCTCAGTGGGAAGGTAGCGGTTTCCGGGGCCTCAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     240467 186 -   1829203 accttctgagtcaaattttcacatcc-------------tttccagtctccattgc-acCTTGATTT----AGAGTCAGCAGTT-------------CCCCAGCCTCAGTTCTTTGAACC----------CACTGTGCCTGACTGTGAGCTGCCCACTCAAGCCCAAG-----GGATGCGGG-CAATGAGTTGCAAACCCTCAGTGGGAAGGTAGCGGTTTCTAGGGCCTCAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30433541 187 + 171630274 accttctgagtcaaattttcacatcc-------------ttttcattCTGCCTTGA-GCCTTGATTTAA--ACAGCCAGCAGTT-------------CC-CAGACTCAGCTCTTTGAACC----------CACTGTGCCTGACTGCAAGTTGCCCACTCAAGCCCAAG-----GGGTG-GGGGCAATGGGGTGCAAACCCACAGTGGGAAGGTAGCAGTTTCCAGGGCCTCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           244961 188 +    515838 accttctgagtcaaattttcatatcc-------------tttccattCTGCCTTGA-GCCTTGATTTAA--ACAGTCAGCAGTT-------------CCGTAGACTCAGCTCTTCGAACG----------CACTGTGCCTGACTGCAAGCTGTCCACTCGTGCCCAAG-----GGGTG-GGGGCAATGGGGTGCAAACCCACAGTGGGAAGGTAGCAGTTTCCAGGGCCTCAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     871445 173 -   1771730 accttctgagtcagattttcatatcc-------------tttccattCTGCCTTG------------------AGTCAGCAGTT-------------CCGCAGACTCAGCTCTTCGAACC----------CACTGTGCCTGACTGTAAGCTGCCCACTCAAGCCCAAG-----GGGTG-GGGGCAATGGGGTGCAAACCCACAGTGGGAAGGTAGCAGTTTCCAGGGCCTCAC
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     136187 186 -   1411461 acctcccgagtcaaaattccacatcc-------------tttccgttctccactgt-gccctgATTCCA--ACAAGCAGCAGTT-------------CCCCAGACTCAGATCGTTGCACC----------TTCTGTGCCTGACAGCGAACTCCCTGCTCAAGTGCAAG-----GGTTG-GGGGCAATGGCGTACAAACCCACAGCGAGGAGGTAACGGTTTCCGGGGCCCT--
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           288226 178 +  18854210 aatttctgagtcaaaattctgcatcc-------------attccactCTTCATTAT-ACCTTAATTCCA--ACAGGCAGCAGTT-------------CCCCAGACTCACATCTTTGCACC----------CTCTGTGCCTAACCACCAACTCCCTGCTCACGTGCAAG-----GGGGG-GAGG----------CAAACTCACCGAGAGGAAGTAATAGTTTCCAGGACCTCCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58088278 174 -  94987271 accctctgggtca---tttcgcctgccccTAGAGTACTATTCTGATTCTTCGTCTT-GCTTTGGTTA----CAGACTGGCATTT-------------TCTAGAACTCAATTCTTTGAGCC----------CACTGGACCTGGCTATAAATGGCCAACTCAAGTACAAA-----GAGTA-CAG-CAAT-GGGTGTCAATCAA--------------------CTGGGGCCTCCC
i mm10.chr17               I 643 I 3
s canFam3.chr35            26322019 167 +  26524999 acc-------tcaaaattccacgttc-------------cttccactTTCCATTATGGCCTTGATTTCA--ACAGACATCAGAT-------------CT-CAAACACAGACCTTTGTGCC----------CTTGGGG----------AACTGCCTGCTAGTGGGCACG-----GATGA-GGG--GAT-GGGAGCAGGGCGAGAGCGAGGAGGTA-CTGCCTCCCAGGCCTCTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            32438 173 -     45298 ACCTCCTGATGAAAAACCCCACGCCC-------------TTCCCACCCTCCAGGAC-ACCCCGATTTTAACAGACTCGGCCTTTGAACCACATGCTATTCCAGAGGTGATTCATTCCACCGGCAGACCGGCCCCATGCCTGGCTCTGAAGGGCCTACTCGAG-----------GGGCG-CAG-----------------------GCGGAGGAAGC-----------CCTGAC
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               329643 1527 + 123392446 I
e aotNan1.NW_018496904v1     369910  13 -    383796 I

a score=1272362.000000
s hg38.chr6_GL000254v2_alt  1456412 109 +   4827813 TGAACTC-------CTGGGCTGAT-GGGGGAACAGGGAA-GAAACCTCAAATGCCTACCTGATAATTCTGGGCAGCTTCTT--------------CGATCAAGCTGACATTATGGGATTTGTGGTCCTTGGA
s panTro5.chr6             30325863 109 + 175400573 TGAACTC-------CTGGGCTGAT-GGGGGAACAGGGAA-GAAACCTCAAATGCCTACCTGATAATTCTGGGCAGCTTCTT--------------CGATCAAGCTGACATTATGGGATTTGTGGTCCTTGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30560226 109 + 173848474 TGAACTC-------CTGGGCTGAT-GGGGGAACAGGGAA-GAAACCTCAAATGCCTACCTGATAATTCTGGGCAGCTTCTT--------------CGATCAAGCTGACATTATGGGATTTGTGGTCCTTGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     267289 109 +   2037526 TGAACTC-------CTGGGCTGAT-GGGGGAACAGGGAA-GAAACCTCAAATGCCTACCTGATAATTCTGGGCAGCTTCTT--------------CGATCAAGCTGACATTATGGGATTTGTGGTCCTTGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74934321 109 + 122973662 TGAACTC-------CTGGGCTGAT-GGGGGAACAGGGAA-GAAACCTCAAATCCCTACCTGATAATTCTGAGCAGCTTCTT--------------CTATCAGGCTGACATTATGGGATTTGTGGTCCTTGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30813848  98 + 172585720 TGAACTC-------CTGGGCTGAT-GGGGG------------AACCTCAAATGCCTACCTGATAATTCTGCGCAGCTTCTT--------------CAATCAAGCTGACATTATGGGATTTGTGGTCCTTGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30103336  98 - 170955103 TGAACTC-------CTGGGCTGAT-GGGGG------------AACCTCAAATGCCTACCTGATAATTCTGCGCAGCTTCTT--------------CGATCAAGCTGACATTATGGGATTTGTGGTCCTTGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     352191  98 +   1495729 TGAACTC-------CTGGGCTGAT-GGGGG------------AACCTCAAATGCCTACCTGATAATTCTGCGCAGCTTCTT--------------CGATCAAGCTGACATTATGGGATTTGTGGTCCTTGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     452034  98 -    863181 TGAACTC-------CTGGGCTGAT-GGGGG------------ACCCTCAAATGCCTACCTGATAATTCTGGGCAGCTTCTT--------------AGATCAAGCTGACATTATGGGATTTGTGGTCCTTGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29602296  98 -  71996105 TGAACTC-------CTGGGCTGAT-GGGGG------------AACCTCAAATGCCTACCTGATAATTCTGGGCAGCTTCTT--------------CGATCAAGCTGACATTATGGGATTTGTGGTCCTTGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     301083  98 -    735854 TGAACTC-------CTGGGCTGAT-GGGGG------------AACCTCAAATGCCTACCTGATAATTCTGGGCAGCTTCTT--------------AGATCAAGCTGACATTATGGGATTTGTGGTCCTTGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     240653  98 -   1829203 TGAACTC-------CTGGGCTGAT-GGGGG------------AACCTCAAATGCCTACCTGATAATTCTGGGCAGCTTCTT--------------CGATCAAGCTGACATTACTGGATTTGTGGTCCTTGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30433728 109 + 171630274 TGAATGC-------CTGGGCTGAT-AAGGGAGCAGGGAA-AAAACCTCAAATGCCTACCTGGTAATTCTGGGCAGCTTCAT--------------CAATCAAGCTGGCATTATGAGATTTGTGGTCCTTGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           245149 110 +    515838 TGAACGC-------CTGGGCTGAT-AGGGGAACAGGGAATAAAACCTCAAATGTCTACCTGATAATTCTGGGCAGCTTCAT--------------TGATCAAGCTGGCATTATGGGATTTGTGGTCCTTGGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     871618 110 -   1771730 GGAATGC-------CTGGGCTGAC-AGGGGAGCAGGCAATAAAACCTCAAATGTCTACCTGATAATTCTTGGCAGCTTCAT--------------TGATCAAGCTGGCATTATGAGATTTGTGATCCTTGGA
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               331170 107 + 123392446 TGAACTC-------CTGGGCTGAT-GGGCA--CAGGGAA-GGAAGCCCGAAAGCCTACCTGATAATGCTGGGCGGCTGCTT--------------CTATCCAGCTGGCGTTATGGGATCTGTGGTCCTTGGA
i micMur3.chr6             I 1527 I 196
s proCoq1.NW_012149775v1     136373 108 -   1411461 CGAACTC-------CTGGGCTGATGGGGGA--TGGGGAA-GCAAGCCCAAATGCCTACCCGATAATGCTGGGCAGCTGCTT--------------CTATCAAGCTGGCGTTATGGGATCTGTGGTCCTTGGA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           288404 107 +  18854210 TGAACTC-------ATCGGCTGTG-GGGGC--CAGGAAA-GTAAGCCCAAATGCCTACCTGATAATTCTGAGTAGTTTCAT--------------CTATCAAGCTGGCATCATGGGATTTGTGGTCTTTGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58088455 109 -  94987271 TGAACTCTACTCTGCTGGGCT----GGGGG--CAGAGAA---GGGCCCAGGTGCCTACCTTGTAGTTCTGGGCAGCCTCAT--------------CTATCAAGGTGACATTGTGAGACTTGTGGTCCTTGGA
i mm10.chr17               I 3 C 0
s canFam3.chr35            26322186  85 +  26524999 -----------------------------------------------GGAACTATGATCTGACCAGTCAGGGCAGGTCCCTGGGGGCAATGGCTGCTGTCGGATCTCCGTGGTGGACTCTGTGGTGCTTGGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            32611 103 -     45298 AGGGCCC-------CT-GGCTGGT-GGGGCTAGGGGGGA------CCCTGGCGCCTACCTGGTACCTCTGGGCCGCTTCGT--------------CCAGTGGGCTGGCGTTGTGGAATTTGTGCTCCCTGGA
i dasNov3.JH580105         C 0 C 0
e aotNan1.NW_018496904v1     369910  13 -    383796 I

a score=1906274.000000
s hg38.chr6_GL000254v2_alt  1456521 163 +   4827813 TTCACGACACACAAAACAGAGGAACTTCCCATCATCCTCGCAGAAATAGTGGAACATCTCCTGGTGCCTCGGGCATGTAGCCTCTTTCCTTTTGGACTGCACCTCAGAGGCTTGTAGAGCTTGGATTTTCTCCACCAGATTCCGCAACAGCGAGTTGAACCTG
s panTro5.chr6             30325972 163 + 175400573 TTCACGACACACAAAACAGAGGAACTTCCCATCATCCTCGCAGAAATAATGGAACATCTCCTGGTGCCTCGGGCATGTAGCCTCTTTCCTTTTGGACTGCACCTCAGAGGCTTGTAGAGCTTGGATTTTCTCCACCAGATTCCGCAACAGCGAGTTGAACCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30560335 163 + 173848474 TTCACGACACACAAAACAGAGGAACTTCCCATCATCCTCGCAGAAATAATGGAACATCTCCTGGTGCCTCGGGCATGTAGCCTCTTTCCTTTTGGACTGCACCTCAGAGGCTTGTAGAGCTTGGATTTTCTCCACCAGATTCCGCAACAGCGAGTTGAACCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     267398 162 +   2037526 TTCACGACACACAAAACAGAGGAACTTCCCATCATCCTCGCAGAAATAATGGAACATCTCCTGGTGCCTCGGGCATGTAGCCTCTTTCCTTTTGGACTGCACCTCAGAGGCTTGTAGAGCTTGGATTTTCTCCA-CAGATTCCACAACAGTGAGTTGAACCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74934430 163 + 122973662 TTCACGACACACAAAACAGAGGAACTTCCCATCATCCTCGCAGAAATAATGGAGCATCTCCTGGTGCCTCGGGCATGTAGGCTCTTTCCTTTTGGACTGCACCTCAGAGGCTTGTAGAGCTTGGATTTTCTCCACCAGATTCCACAACAGTGAGTTGAACCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30813946 163 + 172585720 TTCACGACACACAAAACAGAGGAACTTCCCATCATCCTTGCAGAAATAATAGAACATCTCCTGGTGCTTTGGGCATGTAGGCTCTTTCCTTTTGGACTGCACCTCAGAGGCTTGTAGAGCTTGGATTTTCTCCACTAGATTCGCCAACAGCCGGTTGAGCCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30103434 163 - 170955103 TTCACGACACACAAAACAGAGGAACTTCCCATCATCCTTGCAGAAATAATAGAACATCTCCTGGTGCTTTGGGCATGTAGGCTCTTTCCTTTTGGACTGCACCTCAGAGGCTTGTAGAGCTTGGATTTTCTCCACCAGATTCGCCAACAGCCGGTTGAGCCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     352289 163 +   1495729 TTCACGACACACAAAACAGAGGAACTTCCCATCATCCTTGCAGAAATAATAGAACATCTCCTGGTGCTTTGGGCATGTAGGCTCTTTCCTTTTGGACTGCACCTCAGAGGCTTGTAGAGCTTGGATTTTCTCCACCAGATTCGCCAACAGCCGGTTGAGCCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     452132 163 -    863181 TTCACGACACACAGAACAGAGGAACTTCCCATCATCCTTGCAGAAATAATGGAACATCTCCTGGTGCTTTGGGCATGTAGGCTCTTTCCTTTTGGACTGCACCTCAGAGGCTTGTAGAGCTTGGATTTTCTCCACCAGATTCGCCAACAGCCAGTTGAGCCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29602394 163 -  71996105 TTCACTACACACAAAACAGAGGAACTTCCCATCATCCTTGCAGAAATAATAGAACATCTCCTGGTGCTTTGGGCATGTAGACTCTTTCCTTTTAGACTGCACCTCAGAGGCTTGTAGAGCTTGGATTTTCTCCGCCAGATTCGCCAACAGCCACTTGAGCCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     301181 163 -    735854 TTCACGACACACAAAACAGAGGAACTTCCCATCATCCTTGCAGAAATAATGGAACATCTCCTGGTGCTTTGGGCATGTAGGCTCTTTCCTTTTGGACTGCACCTCAGAGGCTTGTAGAGCTTGGATTTTCTCCACCAGATTCGCCAACAGCCGGTTGAGCCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     240751 163 -   1829203 TTCATGACACACAAAACAGAGGAACTTCCCATCATCCTTGCAGAAATAATAGAACATCTCCTGGTGCTTTGGGCATGTAGGCTCTTTCCTTTTGGACTGCACCTCAGAGGCTTATAGAGCTTGGATTTTCTCCACCAGATTCTCCAACAGCCAGGTGAGCCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30433837 147 + 171630274 TTCATGACACACAAATCA----------------TCCTCGCAGAAATAATGGAACATCTCCTGGTGCCCCCGGCATGCAGGTGTTTTCCTTTCAGACTGCACCTCAGAGGCATCTAGAGCTTGGATTTTCTCCACCAGATTCACCAACAGTCAGTTGGACATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           245259 163 +    515838 TTCACGACACACAAAACAGAGGAACTTCCCATAGTCCTCACAGAAATAATGGAACGTCTCCTGGTGCCTCGGGCATGCAGGCGTTTTCCTTTTGGACCGCACCTCAGAGGCATCTAGAGCTTGGATTTTCTCCACCAGATTCACCAACAATCAGTTGGACATC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     871728 163 -   1771730 TTCACGACACACAAAACAGAGGAACTTTCCATCATCCTTACAAAAATAATGGAACATCTCCTCGTGCCCCAGGCATGTAGGCATTTTCCTTTCAGACTGCACCTCAGAGGCATCTAGAGCTTGGATTTTCTCCACCAGATTCACCAACAGTCAGTTGGACACC
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     136481 163 -   1411461 CTCACGACACACAACACAGAGGAACTTCCCATCGTGCTCACAGAAGTAATGGAACCTCTCCCGGTGCCGCGGACACGACAGCTCTTCCCTTTTGGGCTGCATCTCAGACGGAGCCAGAGCTTGGATTTTCTCCACGAGATTCACCAGCAGCCAGTTGGGCCTG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           288511 161 +  18854210 CTCATGACACACAACACAGAGGAACGT-CGGTCGTGCCCACAGAAGTAATGGGGCCTCTCCTGGTGCT-CGGGCACAACGGCTTTTCCCTTTTGGGTTGTGTCTTAGAGGGATCCAGAGTTTGGATTTTCTCTACAAGATTCGCCAAAAGCCAGGTGGACTTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58088564 163 -  94987271 GTCACGACACACCACACAGAGGAATGCCCCATCCTGCTCGCAGAAGTAATGTAGCTTTTCCTTGTGCCTCTGACATCTTGAGTCTTCCTTTTCTGCTTGGATGTCAGCAGGATCCATACTTTGGATCTTCTCTGCAAGACTAGCCAGCAGCTTATTGGGCCTG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26322271 103 +  26524999 TTCAGCATACACGA-----GGGAACTTCCCATCAGGCCCACGGA------------------------------------GCCCTCTCCCTCTGG----------------CTCTGGGGCTGGGATGTTCTCCAT--GGTTCCCCAGTGACCGG-CGGGCCTA
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            32714 163 -     45298 TTCGCGGCACACCACACAGAGAAACTTGCCGTCCTGCTCGCAGAAGTAGTGGAAGTTCTCGCGGTGCTTCTGGCACCGGAGCTCCCTGCTCTCGGCCGGCGCCTGGGTGGCGCCCAGAGCCTGGATCTTCTCCACCAGGTTCACCAGCAGCCAGTTGGGCCGC
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               331277 196 + 123392446 I
e aotNan1.NW_018496904v1     369910  13 -    383796 I

a score=1146896.000000
s hg38.chr6_GL000254v2_alt  1456684 87 +   4827813 ATTGCGTTCTTCCTTACGGAAGTTTTGCAGAGGGGACATTTGAAAAATCCACATGATGTTTCCCCAATCTGAGT-GATGCATTTGAGG
s panTro5.chr6             30326135 87 + 175400573 ATTGCGTTCTTCCTTACGGAAGTTTTGCAGAGGGGACATTTGAAAAATCCACATGATGTTTCCCCAATCTGAGT-GATGCATTTGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30560498 87 + 173848474 ATTGCGTTCTTCCTTACGGAAGTTTTGCAGAGGGGACATTTGAAAAATCCACATGATGTTTCCCCAATCTGAGT-GATGCATTTGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     267560 87 +   2037526 ATTGCGTTCTTCCTTACGGAAGTTTTGCAGAGGGGACATTTGAAAAATCCACATGATGTTTCCCCAATCTGAGT-GATGCATTTGAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74934593 87 + 122973662 ATTGCATTCTTCCTTACGGAAGTTTTGCAGAGGGGACATTTGAAAAATCCACGTGATGTTTCCTCAATCTGAGT-GATGCATTTGAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30814109 87 + 172585720 ATAGTGTTCTTCCTTACGGAAGTTTTGCAGAGGGGACATTTGAAAAATCCACATGATGTTTCCCCACTCTGAGT-GATGCATTTGAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30103597 87 - 170955103 ATTGTGTTCTTCCTTACGGAAGTTTTGCAGAGGGGACATTTGAAAAATCCATATGATGTTTCCCCACTCTGAGT-GATGCATTTGAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     352452 87 +   1495729 ATTGTGTTCTTCCTTACGGAAGTTTTGCAGAGGGGACATTTGAAAAATCCGTATGATGTTTCCCCACTCTGAGT-GATGCATTTGAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     452295 87 -    863181 ATTGTGTTCTTCCTTATGGAAGTTTTGCAGAGGGGACATTTGAAAAATCCACATGATGTTTCCCCACTCTGAGT-GATGCATTTGAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29602557 87 -  71996105 ATTGTGTTCTTCCTTATGGAAGTTTTGCAGAGGGGACATTTGAAAAATCCACATGATGTTTCCCCACTCTGAGT-GATACATTTGAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     301344 87 -    735854 ATTGTGTTCTTCCTTACGGAAGTTTTGCAGAGGGGACATTTGAAAAATCCACATGATGTTTCCCCACTCTGAGT-GATGCATTTGAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     240914 87 -   1829203 ATTGTGTTCTTCCTTATGGAAGTTTTGCAGAGGGGACATTTGAAAAATCCACATGATATTTCCCCACTCTGAGT-GATGCATTTGAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30433984 87 + 171630274 ATCGTGTTCTTCCTTACAGAAGTTTTGCAGAGGGGACATTTGAAAAATTCGCATGATGCTTCCTCACTCTGAGT-GATGCATTTGAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           245422 87 +    515838 ATTGTATTCTTCCTTACGGAAGTTTTGCAGAGGGGACATTTGAAAAATTCGCATGATGCTTCCCCACTCTGAGT-GATGCATTTGAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     871891 87 -   1771730 ATTGTATTCTTCCTTACAGAAGTTTTGCAGAGAGGACATTTGAAAAATTCGCATGATGCTTCCCCACTCTGAGT-GATGCATTTGAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     369923 88 -    383796 ATTGTGTTCTTCCTTACAGACGTTTTGCAGAGGGGACTTTTGAAAAATTCACATGATGCTTCCCCACTCTGAGTGGATGCATTTGAGG
i aotNan1.NW_018496904v1   I 13 C 0
s proCoq1.NW_012149775v1     136644 86 -   1411461 CATGTGGCCTTCGTCACAGAATTGTTGCACGGGGGACATTTGAAAAAATTGTCTCATGCTTCCCCTCTCCGGGT-G-TGCATCTGAGG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           288672 84 +  18854210 AATATG---TTCTTCATGGAACTGTTGTAGAAGAGACATCTGAAAAGATTGCCTGACCCTTCCCCACTCTAAGT-GATGCATCTGAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58088727 84 -  94987271 AACGTATTCTTATTCACAGAGAGTTTGCAGAGAGGACATTGGATCTTTTC---TGACGTTTTTCCAACCTGACT-GATACACTGCAGG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26322374 78 +  26524999 --AGCG-TCTTCCTCCCAGAGTTGTTGCC---AGGACACTGGAGAGGACGGGAGGATGCTTCCCTA---TGTGC-ACTGCCTCTGACA
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            32877 87 -     45298 AGCGAGTCCTTGCGCACCGACTTGCTGCACAGGGGACACTTGAGGACGTCGTCGGAAGCCTCCCCGCTCAGCAT-GATGCACCCGAGG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               331277 196 + 123392446 I

a score=1488997.000000
s hg38.chr6_GL000254v2_alt  1456771 84 +   4827813 CAGAAATTGTGCCCACAGTCGATGGTGACAGGTTTCTGCAGAATGTCCAGGCAGATGGGGCAGATCACTTCCTCTTGCAGTTTG
s panTro5.chr6             30326222 84 + 175400573 CAGAAATTGTGCCCACAGTCGATGGTGACAGGTTTCTGCAGAATGTCCAGGCAGATGGGGCAGATCACTTCCTCTTGCAGTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30560585 84 + 173848474 CAGAAATTGTGCCCACAGTCGATGGTGACAGGTTTCTGCAGAATGTCCAGGCAGATGGGGCAGATCACTTCCTCTTGCAGTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     267647 84 +   2037526 CAGAAATTGTGCCCACAGTCGATGGTGACAGGTTTCTGCAGAATGTCCAGGCAGATGGGGCAGATCACTTCCTCTTGCAGTTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74934680 84 + 122973662 CAGAAATTGTGCCCACAGTCGATGGTGACAGGTTTCTGCAGAATGTCTAGGCAGATGGGGCAGATCACTTCCTCTTGCAGTTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30814196 84 + 172585720 CAGAAATTGTGCCCACAGTCGATGGTGACAGGCTTCTGCAGAATGTCCAGGCAGATGGGGCAGATCACTTCCTCTTGCAGTTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30103684 84 - 170955103 CAGAAATTGTGCCCACAGTCGATGGTGACAGGTTTCTGCAGAATGTCCAGGCAGATGGGGCAGATCACTTCCTCTTGCAGTTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     352539 84 +   1495729 CAGAAATTGTGCCCACAGTCGATGGTGACAGGTTTCTGCAGAATGTCCAGGCAGATGGGGCAGATCACTTCCTCTTGCAGTTTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     452382 84 -    863181 CAGAAATTGTGCCCACAGTCGATGGTGACAGGTTTCTGCAGAATGTCCAGGCAGATGGGGCAGATCACTTCCTCTCGCAGTTTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29602644 84 -  71996105 CAGAAATTGTGCCCACATTCGATGGTGATAGGTTTCTGCAGAATGTCCAGGCAGATGGGGCAGATCACTTCCTCTTGCGGTTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     301431 84 -    735854 CAGAAATTGTGCCCACAGTCGATGGTGACAGGCTTCTGCAGAATGTCCAGGCAGATGGGGCAGATCACTTCCTCTCGCAGTTTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     241001 84 -   1829203 CAGAAATTGTGCCCACAGTCGATGGTGACAGGTTTCTGCAGAATGTCCAGGCAGATGGGGCCGATCACTTCCTCTTGCAGTTTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30434071 84 + 171630274 CAGAAATTGTGCCCACAGTCAATGGTGGCAGGTTTCTCCAGAACATCCAGGCAGATGGAACAGATCACTTCCTCTTGCAGCTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           245509 84 +    515838 CAGAAATTGTGCCCACAGTCGATGGTGACAGGTTTCTCCAGAATGTCCAGGCAGATGGAACGGATCGCTTCCTCTTGCAGTTTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     871978 84 -   1771730 CAGAAATTGTGCCCACAGTTGATGGTGACAGGTTTTTCCAGAACGTCCAGGCAGATGGAACAGATCACTTCCTCTTGCAGTTTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     370011 84 -    383796 CAGAAATTGTGCCCACAGTCAATGGTGACAGGTTTCTCCAGAACGTCCAGGCAGATGGGACAGATCACCTCCTCTTGCAGTTTG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               331473 83 + 123392446 CAGAAATTATGCCCACAGTTGATGGTGACAGGGTACT-CAGAATGTCCAAGCGGACAGGGCAAGTCACTTCCTCCTGCAGTTTG
i micMur3.chr6             I 196 I 212
s proCoq1.NW_012149775v1     136730 83 -   1411461 CAGAAATTGTGCCTGCAGTCGATGGTGACAGGGTCCT-CAGAATGTCCAAGCAGGTGGGGCAAGTCACCTCCTCCTGCAGTTTG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           288756 84 +  18854210 CAGAAATTTTGCCTGCAGTGGATGGTGACAGAGTCCTGCAGAATGTCCAAGCAGATGGGGCAGATCACGTCCTCCTGCAGTTTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58088811 84 -  94987271 CAGAAGTTGTGCCCACAGTCAATGGTGACAGGATCTTGTAGAATTTCCATGCAGATGGGGCAGGTCACCTCCTCCTGCAGTTGG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26322452 82 +  26524999 GAGAAAGGGTGCCCAGAGTTGGTGG-GGCAGGGTCCTGCGGAATATCCACGCAG-TGGGGCACATGGCCTCCTCCAGCTGTCAA
i canFam3.chr35            C 0 I 9
s dasNov3.JH580105            32964 84 -     45298 CAGAAGTTGTGCCCGCAGTCGATGGTGACCGGGTTCTGCAGCGTGTCCATGCAGATGGGGCAGGTCACGTCCTCCTGCAGCGTG
i dasNov3.JH580105         C 0 C 0

a score=449778.000000
s hg38.chr6_GL000254v2_alt  1456855 37 +   4827813 TTCACAAACTGCCCACTGGCCATGACAGAACAACAGG---
s panTro5.chr6             30326306 37 + 175400573 TTCACAAACTGCCCACTGGCCATGACAGAACAACAGG---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30560669 37 + 173848474 TTCACAAACTGCCCACTGGCCATGACAGAACAACGGG---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     267731 37 +   2037526 TTCACAAGCTGCCCACTGGCCATGACAGAACAACGGG---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74934764 37 + 122973662 TTCACAAACTGCCCACTGGCCATGACAGAACAACAGG---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30814280 37 + 172585720 TTCACAAACTACCCACTGGCCGTGACAGAACAGCAGG---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30103768 37 - 170955103 TTCACAAACTACCCACTGGCCGTGACAGAACAGCAGG---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     352623 37 +   1495729 TTCACAAACTACCCACTGGCCGTGACAGAACAGCAGG---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     452466 37 -    863181 TTCACAAACTACCCACTGGCCGTGACAGAACAGCAGG---
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29602728 37 -  71996105 TTCACAAACTACCCACTGGCCGTGACAGAACAGCAGG---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     301515 37 -    735854 TTCACAAACTACCCACTGGCCGTGACAGAACAGCAGG---
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     241085 37 -   1829203 TTCACAAACTACCCACTGGCCGTGACAGAACAGCAGG---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30434155 37 + 171630274 TTCACGAACTGCCCACAGGCCATGACAGAGCCACGGC---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           245593 37 +    515838 TTCACAAACTGCCCACGGGCCATGACAGATCAGCAGG---
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     872062 37 -   1771730 TTCACGAACTGCCCACGGGCCATGACAGAGCAGCAGG---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     370095 37 -    383796 TTCACAAACTGCCCACTGGCCATGACAGAGCAGCAGG---
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     136813 35 -   1411461 TTGGCAAACTG--GACTGGCCATGACAGAGCAGCAGG---
i proCoq1.NW_012149775v1   C 0 I 184
s otoGar3.GL873550           288840 37 +  18854210 TTGGCAGAGGGTTGACTGGCCATGACAGAGCAACAAG---
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58088895 37 -  94987271 CAGGCCAGAGGTTGGCCTGCCATGATGGAACAGCAGG---
i mm10.chr17               C 0 C 0
s canFam3.chr35            26322543 35 +  26524999 CTGGTAAACCCTTGATTGGCCATGGCTGGTCAAGG-----
i canFam3.chr35            I 9 C 0
s dasNov3.JH580105            33048 40 -     45298 CTGGCGAAGTGCTGGCCGGCCATGGGGCGGGAGCGGGAGG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               331556 212 + 123392446 I

a score=913946.000000
s hg38.chr6_GL000254v2_alt  1456892 87 +   4827813 GCTGTTTCAAGACTGTAGGAAGCTGTGC--------CAAGTCTGTAGGAGCCCCGGAGTCCACTGTGGATACTGTTTCTAGGAAGGGAGAAGGGA
s panTro5.chr6             30326343 87 + 175400573 GCTGTTTCAAGACTGTAGGAAGCTGTGC--------CAAGTCTGTAGGAGCCCCGGAGTCCACTGTGGATACTGTTTCTAGGAAGGGAGAAGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30560706 87 + 173848474 GCTGTTTCAAGACTGTAGGAAGCTGTGC--------CAAGTCTGTAGGAGCCCCGGAGTCCACTGTGGATACTGTTTCTAGGAAGGGAGAAGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     267768 87 +   2037526 GCTATTTCAAGACTGTAGGAAGCTGTGC--------CAAGTCTGTAGGAGCCCCGGAGTCCACTGTGGATACTGTTTCTAGGAAGGGAGAAGGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74934801 87 + 122973662 GCTGTTTCAAGACTGTAGGAAGCTGTGC--------CAAGTCTGTAGGAGTCCCAGAGTCCACTGTGGATACTGTTTCTAGGAAAGGAGAAGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30814317 87 + 172585720 GCTGGTTCAAGACTGTAGGAAGCTGTGC--------CAAGTCTGTAGGAGTCCCGGAGTCCAATGTGGATACTGTCTCTAGGAAGGGAGAAGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30103805 87 - 170955103 GCTGTTTCAAGACTGTAGGAAGCTGTGC--------CAAGTCTGTAGGAGTCCCGGAGTCCAATGTGGATACTGTCTCTAGGAAGGGAGAAGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     352660 85 +   1495729 GCTGTTTCAAGAC--TAGGAAGCTGTGC--------CAAGTCTGTAGGAGTCCCGGAGTCCAATGTGGATACTGTCTCTAGGAAGGGAGAAGGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     452503 87 -    863181 GCTGTTTCAAGACTGTAGGAAGCTGTGC--------CAAGCATGTAGGAGTCCCGGAGTCCAATGTGGATACTGTCTCTAGGAAGGGAGAAGGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29602765 87 -  71996105 GCTGTTTCAAGACTGTAGGAAGCTGTGC--------CAAGTCTGTAGGAGTCCCGGAGTCCAATGTGGATACTGTCTCTAGGAAGGGAGAAGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     301552 87 -    735854 GCTGTTTCAAGACTGTAGGAAGCTGTGC--------CAAGTCTGTAGGAGTCCCGGAGTCCAATGTGGATACTGTCTCTAGGAAGGGAGAAGGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     241122 87 -   1829203 GCTGTTTCAAGACTGTCAGAAGCTGCGC--------CAAGTCTGTAGGAGTCCCGGAGTCCAATGTGGATACTGTCTCTAGGAAGGGAGAAGGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30434192 86 + 171630274 GCTGTTGCAAGACTGCAGGAAGCTGTGT--------CAAGTCTGTAGGAGTCCAGGAGTCCA-TGTGGACACCGCTTCTAGGAAGGGAGAAGGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           245630 87 +    515838 GCTGTTGCAAGACTTCAGGAAGCTGTGT--------CAAGTCTGTAGGAGTCCAGGAGTCCACTGTGGACACCACTTCTAGGAAGGGAGAAGGGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     872099 87 -   1771730 GCTGTTGCAAGACTGTAGGAAGCTGTGT--------CAAGTCTGTAGGAGTCCAGGAATCCACTGTGGTCACTGCTTCTAGGAAGGGAGAAGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     370132 87 -    383796 GCTGTTGCAAGACTGCAGGAAGCTGTGT--------CAAGTCTGTAGGAGTCCAGGAGTCCACTGTGGACACCGCTTCTAGGAAGGGAGAAGGGA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           288877 61 +  18854210 ---------------------GCTGTTT--------CAAGCTTGTAGGAGGATAGGAGACTGCT-TAGACCCTGGTTCT----AAGTGAAAGGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58088932 60 -  94987271 GCTAATCTGAGA------------------------------TGTGAAAGTACAGAAATCCAAGGC-----CTGGTGCTTGTAAGAGAGAAGGAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26322578 64 +  26524999 GCTGCTTC--------------CTGCTA--------CA-------GAGAGTCTACAGGTCTGCTGTGGACCCTGGCTCTGGGAAGGGAGAAGG--
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            33088 81 -     45298 ------GCCCGGCAGCGGGGACCCGTGCGGCCGGCTCAAGGAAGGGGGAGAC----AGGACACGGCG----CTGGCTCTAGGAAGTGGGGGGAGA
i dasNov3.JH580105         C 0 I 178
e micMur3.chr6               331556 212 + 123392446 I
e proCoq1.NW_012149775v1     136848 184 -   1411461 I

a score=603423.000000
s hg38.chr6_GL000254v2_alt  1456979 55 +   4827813 GTCAGAGAAAGTGGAGGTCAGAGATTCTGCCAATTAGTTAGAAGAGCAGAGAGAG
s panTro5.chr6             30326430 55 + 175400573 GTCAGAGAAAGTGGAGGTCAGAGACTCTGCCAATTAGTTAGAAGAGCAGAGAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30560793 55 + 173848474 GTCAGAGAAAGTGGAGGTCAGAGATTCTGCCAATTAGTTAGAAGAGCAGAGAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     267855 55 +   2037526 GTCAGAGAAAGTGGAGGTCAGAGATTCTGCCAATTAGTTAGAAGAGCAGAGAGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74934888 55 + 122973662 GTCAGACAAAGTGGAGGTCAGAGATTCTGCCAATTAGTTAGAAGAGCAGAGAGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30814404 55 + 172585720 GTCAGAGAAGATGGAGGTCAGAGATTCTGCCAATTAGTTAGAAGAGCAGAGAGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30103892 55 - 170955103 GTCAGAGAAGATGGAGGTCAGAGATTCTGCCAATTAGTTAGAAGAGCAGAGagag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     352745 55 +   1495729 GTCAGAGAAGATGGAGGTCAGAGATTCTGCCAATTAGTTagaagagcagagagag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     452590 55 -    863181 GTCAGAGAAGGTGGAGGTCAGAGATTCTGCCAATTAGTTAGAAGAGCAGAGAGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29602852 55 -  71996105 GTCAGAGAAGGTGGAGGTCAGAGATTCTGCCAATTAGTTAGAAGAGCAGAGAGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     301639 55 -    735854 GTCAGAGAAGGTGGAGGTCAGAGGTTCTGCCAATTAGTTAGAAGAGCAGAGAGAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     241209 55 -   1829203 GTCAGAGAAGGTGGAAGTCAGAGATTCTGCCAATTAGTTAgaagagcagagaaag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30434278 55 + 171630274 GTCAGAAAAGGTGGAGGGCAGAGATTCTGCCAATTAGTTAGAAGAGCAGGGAGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           245717 55 +    515838 GTCAGAAAAGGTGGAGGGCAGAGATTCTGACAATTAGTTAGAAGAGCAGGGAGAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     872186 55 -   1771730 GTCAGAAAAGGTGGAGGTCAGAGATTCTGCCAATTAGTTAGAAGAGCAGGGAGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     370219 55 -    383796 GTCAGAAAAGGTGGAGGTCAGAGATTCCGCCAATTAGTTAGAAGAGCAGGGAGAG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           288938 45 +  18854210 AACAGAGGAGGTGGAGGTCAAAGATTCTACCACTTAGTT----------GGAGTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58088992 47 -  94987271 GC---AGGAGGCAGAGGTTGAAGAGTAT----CTCAGGGAGAGGATTAGAG-GAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26322642 21 +  26524999 --------AACCAAAGGACAGAGGCCTCG--------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               331556 212 + 123392446 I
e dasNov3.JH580105            33169 178 -     45298 I
e proCoq1.NW_012149775v1     136848 184 -   1411461 I

a score=692641.000000
s hg38.chr6_GL000254v2_alt  1457034 76 +   4827813 AGGAAAAGAAGAGGGAG-AAAAA--AATAAAGAAATGATAGAAAAGCGTAAAATTTAGGATCTAGAAAATATTATAAAG
s panTro5.chr6             30326485 76 + 175400573 AGGAAAAGAAGAGGGAG-AAAAA--AATAAAGAAATGATAGAAAAGCGTAAAATTTAGGATCTAGAAAATATTATAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30560848 76 + 173848474 AGGAAAAGAAGAGGGAG-AAAAA--AATAAAGAAATGATAGAAAAGCATAAAATTTCCGATCTAGAAAATATTATAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     267910 76 +   2037526 AGGAAAAGAAGAGGGAG-AAAAA--AATAAAGAAATGATAGAAAAGCATAAAATTTCCGATCTAGAAAATATTATAAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74934943 76 + 122973662 AGGAAAAGAAGAGGGAG-AAAAA--AGTGAAGAAATGATAGAAAAGGGTAAAATTTAGGATCTAAAAAATATTACAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30814459 77 + 172585720 AGGAAAAGAAGAGGGAGAAAAAA--AATAAAGAAATGATAGAATATGGTAACATTTAGGATCTAGAAAATATTATAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30103947 77 - 170955103 aggaaaagaagagggagaaaaaa--aaaaaagaaatgaTAGAATATGGTAACATTTAGGATCTAGAAAATATTATAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     352800 77 +   1495729 aggaaaagaagagggagaaaaaa--aaaaaagaaatgaTAGAATATGGTAACATTTAGGATCTAGAAAATATTATAAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     452645 77 -    863181 AGGAAAAGAAGAGGGAGAAAAAA--AATAAAGAAATGATAGAAAATGGTAACATTTAGGATCTAGAAAATATTATAAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29602907 73 -  71996105 AGGAAAAGAAGAGGGAGAAAAAA--AAT----AAATGATAGAATATGGTAACATTTAGGATCTAGAAAATATTATAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     301694 77 -    735854 AGGAAAAGAAGAGGGAGGAAAAA--AATAAAGAAATGATAGAAAATGGTAAAATTTAGGATCTAGAAAATATTATAAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     241264 77 -   1829203 aggaaaagaagagggagaAAAAA--AATAAAGAAATGATAGAAAACGGTAAAATTTAGGATCTAGAAAATATTACAAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30434333 78 + 171630274 AGGAAAAGAAGAAGGAGAGAAAAAAAATAAAAGAATGATAGAAAAAGGTAAAATTTA-GATCTAGAAAATATCATAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           245772 73 +    515838 AGAAAAAGAAGAGGGAGAAAAAA-----AAAAGAATGATAGAAAAGGGTAAAATCTA-GATCTAGAAAATATTATAAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     872241 75 -   1771730 AGGAAAAGAAGAGGGAGAAAAAA-AAATAAAAGAATGATAGAAAAGGGTAAAATTTA-GATCTAGAAAATGTTAT--AG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     370274 78 -    383796 AGGAAAAGAAGAGGGAGAAAAAAAATTAAAAAAAATGAGAGAAAAGGGTAAAATTTA-GATCTAGAAAATATTATAAAG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           288983 76 +  18854210 AGGGGGAAAAGAGGAAG-AAAAA--ATTAAAGAAATTATAGAAAAGAGTTAAAATTAGAATGTAGGGAATATTATAAAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58089039 70 -  94987271 AATGAGGGAAGGGGGGGTTAAAT------AAATAATGACAGAAAAGAGTCAGCGATAAA---TGGGGAATATTCTAAAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26322663 65 +  26524999 -GAGAAGGCACAGGGAG----AA--AACACATGAATGGTACACAGGATTTCACATGATAACCCAGACCATAG-------
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            33347 74 -     45298 AGGAAAGGAAAGGGGGGACGAGA--GTCAGGGAAGACGAAGCAGCGGGGACGAGCTGGGGCGCAGACCTTCCTCCA---
i dasNov3.JH580105         I 178 C 0
e micMur3.chr6               331556 212 + 123392446 I
e proCoq1.NW_012149775v1     136848 184 -   1411461 I

a score=455137.000000
s hg38.chr6_GL000254v2_alt  1457110 28 +   4827813 AGAGGAAAACAGATGGGCAGTCCTACCT
s panTro5.chr6             30326561 28 + 175400573 AGAGGAAAACAGATGGGCAGTCCTACCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30560924 28 + 173848474 AGAGGAAAACAGATGGGCAGTCCTACCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     267986 28 +   2037526 AGAGGAAAACAGATGGGCAGTCCTACCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935019 28 + 122973662 AGAGGAAAACAGATGGGCAGTCCTACCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30814536 28 + 172585720 AGAGGAAAACAGATGGGCAGTCCTACCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104024 28 - 170955103 AGAGGAAAACAGATGGGCAGTCCTACCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     352877 28 +   1495729 AGAGGAAAACAGATGGGCAGTCCTACCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     452722 28 -    863181 ACAGGAAAACAGATGGGCAGTCCTACCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29602980 28 -  71996105 AGAGGAAAACAGATGGGCAGTCCTACCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     301771 28 -    735854 AGAGGAAAACAGATGGGCAGTCCTACCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     241341 27 -   1829203 AGAGGAAAA-AAATGGGCAGTCCTACCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30434411 28 + 171630274 AGAGGAAAACAGGTGGGCAATCCTACCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           245845 28 +    515838 AGAGGAAAACAGACGGGCAATCCTACCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     872316 28 -   1771730 AGAGGAAAACAGGTGGGCAATCCTACCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     370352 28 -    383796 AGAGGAAAACAGACGGGCAATCCTACCT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               331768 28 + 123392446 AGAGGAAAACAGATGGACAGTCCTACCT
i micMur3.chr6             I 212 I 387
s proCoq1.NW_012149775v1     137032 28 -   1411461 AGAGGAAAACAGATGGACAGTCCTACCT
i proCoq1.NW_012149775v1   I 184 I 246
s otoGar3.GL873550           289059 27 +  18854210 AGAGGAAAACAAGTGGACAATTCTACC-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58089109 28 -  94987271 AGAAGAAAACAGATGGTCAGTCCTCTCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26322728 27 +  26524999 GGAAGGAACTGGGTGG-CGACACTGGGT
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            33421 25 -     45298 ---GGGGAGGCGATGGGCAAACCTGCCT
i dasNov3.JH580105         C 0 C 0

a score=1940959.000000
s hg38.chr6_GL000254v2_alt  1457138 183 +   4827813 TGCTACCTCTTGAGAACAAATGGATACTTTGAATGTGTAATAGGCTGCTTATAAAGTGAAATAAGTTGTCCTGAACTTTGGAC----TA----AAGGTATGTTTGTATGG----TGGTTGACTAAGAT-CAGAATGACCGGGGCACCAAACACCACTTATGGGGCATTTCCCAATCAGCTCTGAGTAGGGAGTGGA
s panTro5.chr6             30326589 183 + 175400573 TGCTACCTCTTGAGAACAAATGGATACTTTGAATGTGTAATAGGCTGCTTATAAAGTGAAATAAGTTGTCCTGAACTTTGGAC----TA----AAGGTATGTTTGTATGG----TGGTTGACTAAGAT-CAGAATGACCGGGGCACCAAACACCACTTATGGGGGATTTCCCAATCAGCTCTGAGTAGGGAGTGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30560952 183 + 173848474 TGCTACCTCTTGAGAACAAATGGATACTCTGAATGTGTAATAGGCTGCTTATAAAGTGAAATAAGTTGTCCTGAACTTTGGAC----TA----AAGGTATGTTTGTATGG----TGGTTGACTAAGAT-CAGAATGACCGGGGCACCAAACACCACTTATGGGGGATTTCCCAATCAGCTCTGAGTAGGGAGTGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268014 183 +   2037526 TGCTACCTCTTGAGAACAAATGGATACTCTGAATGTGTAATAGGCTGCTTATAAAGTGAAATAAGTTGCCCTGAACTTTGGAC----TA----AAGGTATGTTTGTATGG----TGGTTGACTAAGAT-CAGAATGACCGGGGCACCAAACACCACTTATGGGGGATTTCCCAATCAGCTCTGAGTAGGGAGTGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935047 183 + 122973662 TGCTACCTCTTGAGAACAAATGGATACTTTGAATGTGTAATAGGCTGCTTATAAAGTGAAATAAGTTGTCCTGAACTTTGGAC----TG----AAGGTATGTTTGTGTGG----TGGCTGACTAAGAT-CAGAATGACCGGGGCACAAAACACCACTTATGGGGGATTTCCCAATCAGCTCTGAGTAGGGAGTGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30814564 183 + 172585720 TGCTACCTCTTAAGAACAAATGGATATTTTGAATGTATAATAGGCTGCTTATAAAGTGAGATAAGTTGTCCTGAACTTTGGAC----TA----AAGGTATGTTTGTATGG----TGGTTGACTAAGAT-CAGAATGACCGGGGCACCTAACACCACTCACAGGGGATTTCCCAATCAGCTCTGAGTAGGGAGTGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104052 183 - 170955103 TGCTACCTCTTAAGAACAAATGGATATTTTGAATGTATAATAGGCTGCTTATAAAGTGAGATAAGTTGTCCTGAACTTTGGAC----TA----AAGGTATGTTTGTATGG----TGGTTGACTAAGAT-CAGAATGACCGGGGCACCTAACACCACTCACAGGGGATTTCCCAATCAGCTCTGAGTAGGGAGTGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     352905 183 +   1495729 TGCTACCTCTTAAGAACAAATGGATATTTTGAATGTATAATAGGCTGCTTATAAAGTGAGATAAGTTGTCCTGAACTTTGGAC----TA----AAGGTATGTTTGTATGG----TGGTTGACTAAGAT-CAGAATGACCGGGGCACCTAACACCACTCACAGGGGATTTCCCAATCAGCTCTGAGTAGGGAGTGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     452750 183 -    863181 TGCTACCTCTTAAAAACAAATGGATATTTTGAATGTGTAATAGGCTGCTTATAAAGTGAGATAAGTTGTCCTGAACTTTGGAC----TA----AAGGTATGTTTGTATGG----TGGTTGACTAAGAT-CAGAATGACCGGGACACCTAACACCACTCACAGGGGATTTCCCAATCAGCTCTGAGTAGGGAGTGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603008 183 -  71996105 TGCTACCTCTTAAGAACAAATGCATATTTTGAATGTGTAATAGGCTGCTTATAAAGTGAGATAAATTGTCCTGAACTTTGGAC----TA----AAGGTATGTTTGTATGG----TGGTTGACTAAGAT-CGGAATGACCAGGGCACCTAACACCACTCACAGGGGATTTCCCAATCAGCTCTGAGTAGGGAGTGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     301799 183 -    735854 TGCTACCTCTTAAGAACAAATGGATATTTTGAATGTGTAATAGGCTGCTTATAAAGTGAGATAAGTTGTCCTGAACTTTGGAC----TA----AAGGTATGTTTGTATGG----TGGTTGACTAAGAT-CAGAATGACCGGGACACCTAACACCACTCACAGGGGATTTCCCAATCAGCTCTGAGTAGGGAGTGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     241368 183 -   1829203 TGCTACCTCTTAAGAACAAATGGATATTTTGAATGTGTAATAGGTTGCTTATAAAGTGAAATAAGTTGTCCTGAACTTTGGAC----TA----AAGGTATTTTTGTATGG----TGGTTGACTAAGAT-CAGAATGACTGGGGCACCTAACACCACTCACAGGGGATTTCCCAATCAGCTCTGAGTAGGGAGTGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30434439 177 + 171630274 TGCTACCTCTTGAGAACAAATGGTTATTTTGAATGTGTAATAAGCTGCTTATAAAGTGGGATAAGTTGTCCTGAACTTTGAAC----TA----AAGATATGTTTGTATGG----TGG----CTAAGAT-CAGAATGATGGGGGCACCAAACACCACTCACAGGGGATTTCC--ATCAGCTCTGAGTAGGGAGTGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           245873 177 +    515838 TGCTACCTCTTGAGAACAAATGGATAGTCTGAATGTGTAATAGGCTGCTTATAAAGTGGGATAAGTTGTCCTGGACTTTGAAC----TA----AAGGTATGTTTGTATGG----TGGCTGACTGAGAT-CAGAATGATGGGGGCACCAAACACCACTCA----GGATTTCC--ATCAGCTCTGAGTAGGGAGTGGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     872344 177 -   1771730 TGCTATCTCTTGAGAACAAATGGATATTTTGAATGTGTAATAGGCTGCTTATAAAGTGGGATAAGTTGTCCTGGACTTTGAAC----TA----AAGATATGTTTGTATGG----TGG----CTAAGAT-CAAAATGATGGGGTCACCAAACACCACTCACAGGGGATTTTC--ATCAGCTCTGAGTAGGGAGTGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     370380 181 -    383796 TGCTACCTCTTGAGAACAAATGGATATTTTGAATGTATAATAGGCTGCCTATAAAGTGGGATAAGTTGTCCTGGACTTTGAAC----TA----AAGATATGTTTGTATGG----TGGCTGATTAAGAT-CAGAATGATGGGGGCATCAAACACCACTCACAGGAGATTTCC--ATCAGCTCTGAGTAGGGAGTGGA
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           289086 138 +  18854210 -----------------------------TGAATGT-------GCTTCTTTTAAAATGAGGTAAGTTATGTTGAACCTTGGAC----TA----AAGATATGTTTGTAAGG----CAATTCACTGAGAT-CAGAACGACCAAGGTACCAA--------CACAGAGGATTTCCC-ATCAGTTTCAGGTAGGGAGTGAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58089137 158 -  94987271 CCCTGTCTCTCAAGAACA----GAAACCGAGAGTGCCT-----GCTGCCTATAAAGTAGAGCAAGACTTCCTGGACCTTGAACTAATTA----AACATATCTTTCTGAAG----CAGATT-CAGAGAA-CAGAAAGACGAAGTGACAAAG-------------------TCCACTCAGGTGTAATTGGGGAGTGGA
i mm10.chr17               C 0 I 150
s canFam3.chr35            26322755 157 +  26524999 CAGCACTTGTCGGGAGTGAGGTGGGGCCCCATGT-TGATACATGTTAGTCACACAGTGGGCTGCACAGTCCAGGGCCTTGTAC----CAATGGAGGGTACGTTGAGAAGGCAGTTAGTTGGCTGAGCCGCACAGGCCCCGGGGCACCAGAACCCGCTTATAG----------------------------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            33446 143 -     45298 CGCTGCCTCTCGAGGGCCGGC--------------TGTGCCGGGC---------AGTGGGGCAATTGCCCCTGGACCTTGGAC----CT----ATTAAAAGTGCGTGCGA----GCACTTCCCGAGG--CTGCAGGCCCGGAGTCCAAGGC----------GGAGACTTCCCGCTCAGCTc-gggcggggc-----
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               331796 387 + 123392446 I
e proCoq1.NW_012149775v1     137060 246 -   1411461 I

a score=355728.000000
s hg38.chr6_GL000254v2_alt  1457321 34 +   4827813 GGGGTGGGTGGTGATGCCTACTGAAAGGTCACAG
s panTro5.chr6             30326772 34 + 175400573 GGGGTGGGTGGTGATGCCTACTGAAAGGTCACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30561135 34 + 173848474 GGGGTGGGTGGTGATGCCTACTGAAAGGTCACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268197 34 +   2037526 GGGGTGGGTGGTGATGCCTACTGAAAGGTCACAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935230 34 + 122973662 GGGGTAGGTGGTGATGCCTACTGAAAGGTCACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30814747 34 + 172585720 GGGGTGGGTGGTGATGCCTACTGAAAGGTCACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104235 34 - 170955103 GGGGTGGGTGGTGATGCCTACTGAAAGGTCACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     353088 34 +   1495729 GGGGTGGGTGGTGATGCCTACTGAAAGGTCACAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     452933 34 -    863181 GGGGTGGGTAGTGATGCCTACTGAAAGGTCACAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603191 34 -  71996105 GGGGTGGGTGGTGATGCCTACTGAAACGTCACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     301982 34 -    735854 GGGGTGGGTGGTGATGCCTACTGAAAGGTCACAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     241551 34 -   1829203 GGGGTGGGTGGTGATGCCTACTGAAAGGTCACAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30434616 19 + 171630274 GAGGTGGGTGG---------------GGTCACAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           246050 34 +    515838 GGGGTGGGTGGGGATGCCTGCCGAAAGGTCACAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     872521 34 -   1771730 GGGGTGGGTGGGGACGCCTGCCGAAAAGTCACAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     370561 34 -    383796 GGGGTGGGCAGGGACGCCTGCCGAAAGGTCACAG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           289224 30 +  18854210 AGGGGGGA----GATGCCTGCTGAAATGTCACAG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            33589 27 -     45298 ggggcgcgcg-------cTCCGGGAGGGCCACGG
i dasNov3.JH580105         C 0 I 1269
e micMur3.chr6               331796 387 + 123392446 I
e mm10.chr17               58089295 150 -  94987271 I
e proCoq1.NW_012149775v1     137060 246 -   1411461 I
e canFam3.chr35            26322912  0 +  26524999 C

a score=449413.000000
s hg38.chr6_GL000254v2_alt  1457355 42 +   4827813 CCAG--TTCACTGCAATGCTT----TGGGCATCTTGTATGCAAAGTTC
s panTro5.chr6             30326806 42 + 175400573 CCAG--TTCACTGCAATGCTT----TGGGCATCTTGTATGCAAAGTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30561169 42 + 173848474 CCAG--TTCACTGCAATGCTT----TGGGCATCTTGTATGCAAAGTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268231 42 +   2037526 CCAG--TTCACTGCAATGCTT----TGGGCATCTTGTACGCAAAGTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935264 42 + 122973662 CCAG--TTCACTGCAATGCTT----TGGGCATCTTGTAGGCAAAGTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30814781 42 + 172585720 CCAG--TTCACTGCAATGCTT----TGAGTATCTTGTATGCAAAGTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104269 42 - 170955103 CCAG--TTCACTGCAATGCTT----TGAGTATCTTGTATGCAAAGTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     353122 42 +   1495729 CCAG--TTCACTGCAATGCTT----TGAGCATCTTGTATGCAAAGTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     452967 42 -    863181 CCAG--TTCACTGCAATGCTT----TGGGCATCTTGTATGCAAAGTTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603225 42 -  71996105 CCAG--TTCACTGCAATGCTT----TGAGTATCTTGTAAGCAAAGTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302016 42 -    735854 CCAG--TTCACTGCAATGCTT----TGGGCATCTTGTATGCAAAGTTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     241585 42 -   1829203 CCAG--TTCACTGCAATGCTT----TGGGTATCTCGTATGCAAAGTTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30434635 42 + 171630274 CTAG--TTCACCACAATGCTT----TGGGCATCTTGTATGCAAAGTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           246084 42 +    515838 CTAG--TTCACCATAATGCTT----TGGGCATCTTGTATTCGAAGTTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     872555 42 -   1771730 CTAG--TTCACCACAATGCTT----TGGGCATCTTGTATGCAAAGTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     370595 42 -    383796 CTAG--TTCACCACAATGCTT----TGGGCATCTCGTATACAAAGTTC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           289254 41 +  18854210 CTAAACTTCACC---ATGTTT----CTGGCATCTTGTATGCAGAGCTT
i otoGar3.GL873550         C 0 I 195
s canFam3.chr35            26322912 34 +  26524999 -------------CAATGCCTCTCCTGAAT-TCCTGAATGCAGAGCCC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               331796 387 + 123392446 I
e mm10.chr17               58089295 150 -  94987271 I
e dasNov3.JH580105            33616 1269 -     45298 I
e proCoq1.NW_012149775v1     137060 246 -   1411461 I

a score=354748.000000
s hg38.chr6_GL000254v2_alt  1457397 37 +   4827813 AAGCCTCGGTAGAGCATCTGGA--------AAGTAGGGGAAGGGC
s panTro5.chr6             30326848 37 + 175400573 AAGCCTTGGTAGAGCATCTGGA--------AAGTAGGGGAAGGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30561211 37 + 173848474 AAGCCTTGGTAGAGCATCTGGA--------AAGTAGGGGAAGGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268273 37 +   2037526 AAGTCTTGGTAGAGCATCTGGA--------AAGTAAGGGAAGGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935306 37 + 122973662 AAGCCTTGGTAGAGCATCTGGA--------AAGTAAGGGAAGGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30814823 37 + 172585720 AAGCATTGGTGGAGCATCTGGA--------AAGTAAGGGAAGGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104311 37 - 170955103 AAGCATTGGTGGAGCATCTGGA--------AAGTAAGGGAAGGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     353164 37 +   1495729 AAGCATTGGTGGAGCATCTGGA--------AAGTAAGGGAAGGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453009 37 -    863181 AAGCGTTGGTAGAGCATCTGGA--------AAGTAAGGGAAGGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603267 37 -  71996105 AAGCATTGGTGGAGCATCTGGA--------AAGTAAGGGAAGAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302058 37 -    735854 AAGCGTTGGTAGAGCATCTGGA--------AAGTAAGGGAAGGGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     241627 37 -   1829203 AAGTGTTGGTAGAGCATCTGAA--------AAGTAAGGGAAGGGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30434677 45 + 171630274 AAGCCTGGGTACAGCATCTAGAAAGGAAGGAAGGAAGGGAAGGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           246126 37 +    515838 AAGCCTGGGTACAGCATCTGGA--------AAGGAAGGGAAGGGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     872597 37 -   1771730 AAGCCTGGGTACAGCATCTGGA--------AATGAAGGGAAGGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     370637 37 -    383796 AAGCCTGGGTACAGCATCTGGA--------AAGGAAGGGAAGGGC
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           289490 37 +  18854210 AAACCTTGTGAGAGCATATAGA--------AAGGAAGGAAAGGGT
i otoGar3.GL873550         I 195 C 0
s canFam3.chr35            26322946 15 +  26524999 AGACCCCAGGAGAAC------------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               331796 387 + 123392446 I
e mm10.chr17               58089295 150 -  94987271 I
e dasNov3.JH580105            33616 1269 -     45298 I
e proCoq1.NW_012149775v1     137060 246 -   1411461 I

a score=296702.000000
s hg38.chr6_GL000254v2_alt  1457434 22 +   4827813 AATTCTCTACCTCAGGTGCTTT
s panTro5.chr6             30326885 22 + 175400573 AATTCTCTACCTCAGGTGCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30561248 22 + 173848474 AATTCTCTACCTCAGGTGCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268310 22 +   2037526 AATTCTCTGCCTCAGGTGCTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935343 22 + 122973662 AATTCTCTACCTCAGGTGCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30814860 22 + 172585720 AATTCTCTACCTCAGGTACTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104348 22 - 170955103 AATTCTCTACCTCAGGTACTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     353201 22 +   1495729 AATTCTCTACCTCAGGTACTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453046 22 -    863181 AATTCTCTACCTCAGGTACTTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603304 22 -  71996105 AATTCTCTACCTCAGGTACTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302095 22 -    735854 AATTCTCTACCTCAGGTACTTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     241664 22 -   1829203 AATTCTCTACCTCAGGTACTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30434722 22 + 171630274 AATTTTCTACCTTAGGTACTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           246163 22 +    515838 AATTCTCTACCTTAGGTACTTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     872634 22 -   1771730 AATTCTCTACCTTAGGTACTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     370674 22 -    383796 AATTCTCTACCTTAGGTACTTT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     137306 22 -   1411461 AATTCTCAACCTCAGGTACTTC
i proCoq1.NW_012149775v1   I 246 C 0
s otoGar3.GL873550           289527 22 +  18854210 AATTTTCAACCTCAGGTACttt
i otoGar3.GL873550         C 0 I 578
s canFam3.chr35            26322961 18 +  26524999 ----CACCACCTCAGGGACGTG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               331796 387 + 123392446 I
e mm10.chr17               58089295 150 -  94987271 I
e dasNov3.JH580105            33616 1269 -     45298 I

a score=186179.000000
s hg38.chr6_GL000254v2_alt  1457456 16 +   4827813 GGCTCCTCAC----AGAATT
s panTro5.chr6             30326907 16 + 175400573 GGCTCCTCAC----AGAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30561270 16 + 173848474 GGCTCCTCAC----AGAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268332 16 +   2037526 GGCTCCTCAC----AGAATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935365 16 + 122973662 GGCTCCTCAC----AGAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30814882 16 + 172585720 GGTTCCTCAC----AGAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104370 16 - 170955103 GGTTCCTCAC----AGAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     353223 16 +   1495729 GGTTCCTCAC----AGAATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453068 16 -    863181 GGTTCCTCAC----AGAATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603326 16 -  71996105 GGTTCCTCAC----AGAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302117 16 -    735854 GGTTCCTCAC----AGAATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     241686 16 -   1829203 GGTTCCTCAC----AGAATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30434744 16 + 171630274 GGTTCCTCAC----AAAATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           246185 16 +    515838 GGTTCCTCAC----AGAATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     872656 16 -   1771730 GGTTCCTCAC----AGAATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     370696 16 -    383796 GGCTCTTCGC----AGAATT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     137328 16 -   1411461 GGCTTCTCAA----AGAATT
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr35            26322979 20 +  26524999 GCTCCCACATGTGAAGGGTT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               331796 387 + 123392446 I
e mm10.chr17               58089295 150 -  94987271 I
e dasNov3.JH580105            33616 1269 -     45298 I
e otoGar3.GL873550           289549 578 +  18854210 I

a score=1400113.000000
s hg38.chr6_GL000254v2_alt  1457472 116 +   4827813 TTGTGAAAATGTGGAGGTTATCATCACCTACCTT-GGGGAATTTCCAGTCACAGGGTCAACCAACCAC------------------TCCCTAGCTCAGTAGGATAGGCAAGGAACTTCCTTTCTAAAGAGTTGTT
s panTro5.chr6             30326923 116 + 175400573 TTGTGAAAATGTGGAGGTTATCATCACCTACCTT-GGGGAATTTCCAGTCACAGGGTCAACCAACCAC------------------TCCCTAGCTCAGTAGGATAGGCAAGGAACTTCCTTTCTAAAAAGTTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30561286 116 + 173848474 TTGTGAAAATGTGGAGGTTATCATCACCTACCTT-GGGGAATTTCCAGTCACAGGGTCAACCAACCAC------------------TCCCTAGCTCAGTAGGATAGGCAAGGAACTTCCTTTCTAAAAAGTTGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268348 115 +   2037526 TTGTGAAAATGTGGAGGTTATCATCACCTACC-T-GGGGAATTTCCAGTCACAGGATCAACCAACCAC------------------TCCCTAGCTCAGTAGGATAGGCAAGGAACTTCCTTTCTAAAAAGTTGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935381 116 + 122973662 TTGTGAAAATGTGGAGGTTATCATCACCTACCTT-GGGGAATTTCCAGTCACCGGGTCAACCAACCAC------------------TCCCTAGTTCAGTAGGATAGGCAAGGAACTTCCTTTCTAAAAAGTTGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30814898 116 + 172585720 TTGTGAAAACATGGAGGTTATCATCACCTACCTT-GGGGAATTTCCAGTCACAGCGCCAACCAACCAC------------------TCCCTAGTTCAGTAGGAGAGGCAAGGAACTTCCTTTCTGAAAAGTTGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104386 116 - 170955103 TTGTGAAAACATGGAGGTTATCATCACCTACCTT-GGGGAATTTCCAGTCACAGCGCCAACCAACCAC------------------TCCCTAGTTCAGTAGGAGAGGCAAGGAACTTCCTTTCTGAAAAGTTGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     353239 116 +   1495729 TTGTGAAAACATGGAGGTTATCATCACCTACCTT-GGGGAATTTCCAGTCACAGCGCCAACCAACCAC------------------TCCCTAGTTCAGTAGGAGAGGCAAGGAACTTCCTTTCTGAAAAGTTGTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453084 117 -    863181 TTGTGAAAATGTGGAGGTTATCATCACCTACCTTGGGGGAATTTCCAGTCACAGCGCCAACCAACCAC------------------TCCCTAGTTCAGTAGGAGAGGCAAGGAACTTCCTTTCTGAAAAGTTGTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603342 116 -  71996105 TTGTGAAAATGTGGAGGTTATCATCACCTACCTT-GGGGAATTTCCAGTCACAGCGCCAACCAGCCAC------------------TCCCTAGTTCAGTAGGAGAGGCAAGGAACTTCCTTTCTGAAAAGTTGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302133 116 -    735854 TTGTGAAAATGTGGAGGTTATCATCACTTACCTT-GGGGAATTTCCAGTCACAGCACCAACCAACCAC------------------TCCCTAGTTCAGTAGGAGAGGCAAGGAACTTCCTTTCTGAAAAGTTGTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     241702 116 -   1829203 TTGTGAAAATGTGGAGGTTATCATCACCTACCTT-GGGGAATTTCCAGTCACAGCGCCAACCAACCAC------------------TCCCTAGTTCAGTAGAAGAGGCAAGGAACTTCCTTTCTGAAAAGTTGTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30434760 116 + 171630274 TTGTGAAAATGTGGAGATTATCATCACCTACCTT-GGAGAATTTCCAGTCACAGGGCCAACCAATCAC------------------TACCTAGTTCAGTGGAAGAGGCAAGGAATTTCCTTTCTGAAAAGTCATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           246201 116 +    515838 TTGTGAAAATGTGGAGGTTATCATCACCTACCTT-GGAGAATTTCCAGTCACAGGGTCAACCAGCCAC------------------TCCCTAGGTCAGCAGGAGAGGCAAAGAACTTCCTTTCTGAAAAGTGGTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     872672 116 -   1771730 TTGTGAAAATGTGGAGGTTATCGTCACCTGCCTT-GGAGAATTTCCAGTCACAGGGCCAACCAACCAC------------------TACCTAGTTCAGCGGGAGAGGCAAGGAATTTCCTTTCTGAAAAGTCGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     370712 116 -    383796 TTGTGAAAATGTGGAGTTTATCATCACCTACCTT-GTAGAATTTCCAGTCACAGGGCCAACGAACCAC------------------TCGCTAGTTCAGTGGGAGAGGCAAGGAACTTCCTTTCTGAAAAGTCGTT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     137344 115 -   1411461 CTGCAGAAATGTGGAAGATGTTGTCACCTACCTC-AGAGAATTTCCAGTCACAGGGAGGATCAGTCA-------------------TCCCTAGTGCAGTGGGAGAAGCAGGGAACTTCCTTTCTGAGAGGTTGTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           290127 111 +  18854210 TTGCAGAAATGTGGAAGCTATAATCACC-ACCTT-GGGGAATTTCCAATCACAAGGAGAACCAGTCA-------------------TCCCTAATTCAGTGGGAAAAGCAAGAAACTTCTTTTCTAAGAG---GTT
i otoGar3.GL873550         I 578 C 0
s canFam3.chr35            26322999 124 +  26524999 TTGTGCAATCGAGGACGATCTGGTCACTGGTCTG-GGGAGATTTCCAGT----GCTCCAGACAACCCCGTGGCTGACGTGGTGATATTCCTGGTCCAGCAGGCAGAGCCAGGAGGTCCCTCCAGGCAGG------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               331796 387 + 123392446 I
e mm10.chr17               58089295 150 -  94987271 I
e dasNov3.JH580105            33616 1269 -     45298 I

a score=362239.000000
s hg38.chr6_GL000254v2_alt  1457588 37 +   4827813 CTTTGTTTTTGCACTTTGCTCTTGCCCCTGGT-GATCT
s panTro5.chr6             30327039 37 + 175400573 CTTTGTTTTTGCACTTTGCTCTTGCCCCTGGT-GATCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30561402 37 + 173848474 CTTTGTTTTTGCACTTTGCTCTTGCCCCTGGT-GATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268463 37 +   2037526 CTTTGTTTTTGCACTTTGCTGTTACCCCTGGT-GATCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935497 37 + 122973662 ATTTGTTTTTGCACTTTGCTCTTGCCCCTGGT-GATCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815014 36 + 172585720 CTTTGTTTTTGTACTTTGCTCTTGCCCC-GGT-GATCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104502 36 - 170955103 CTTTGTTTTTGTACTTTGCTCTTGCCCC-GGT-GATCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     353355 36 +   1495729 CTTTGTTTTTGTACTTTGCTCTTGCCCC-GGT-GATCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453201 37 -    863181 CTTTGTTTTGGTAATTTGCTCTTGCCCCTGGT-GATCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603458 36 -  71996105 ATTTGTTTTTGTACTTTGCTCTTGCCCC-GGT-GATCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302249 37 -    735854 CTTTGTTTTGGTACTTTGCTCTTGCCCCTGGT-GATCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     241818 36 -   1829203 CTTTGTTTTTGTACTTTGCTCTTGCCCC-GGT-GATCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30434876 36 + 171630274 CTTTGTTTTTGTACTTTGCTCT-TCCCCTGGT-GATCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           246317 37 +    515838 CTTTGTTTTTGTACTTTGCTCTGGCCCCTGGT-GATCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     872788 37 -   1771730 CTTTGTTTTTGTACTTTGCTCTGGCCCCTGGT-GATCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     370828 37 -    383796 CTTTGTTTTTGTACTTTGCTTTTGCCCCTGGT-GATCT
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     137459 38 -   1411461 CTCTGTTTCCATATGTTGTTTTTGATCCTGGTGGATCT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           290238 32 +  18854210 CTTTGTTTTTGTACA------TTGACCCTGGCGGGTCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58089445 25 -  94987271 CTCTGTCTCTGTACTT--CTCAGATTC-----------
i mm10.chr17               I 150 C 0
s canFam3.chr35            26323123 31 +  26524999 ---TGGTTCTGCA----GGTGCTAGACCTGCTGGATCC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               331796 387 + 123392446 I
e dasNov3.JH580105            33616 1269 -     45298 I

a score=537161.000000
s hg38.chr6_GL000254v2_alt  1457625 37 +   4827813 -TCTGTCTCCCCACA-ACACCTGTAGTAGTCTGTCC--TCT
s panTro5.chr6             30327076 37 + 175400573 -TCTGCCTCCCCACA-ACACCTGTAGTAGTCTGTCC--TCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30561439 37 + 173848474 -TCTGCCTCCCCACA-ACACCTGTAGTAGTCTGTCC--TCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268500 37 +   2037526 -TCTGCCTCCCCACA-ACACCTGTAGTAGTCTGTCC--TCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935534 37 + 122973662 -TCTGCCTCCCCACA-GCACCTGTAGTAGTCTGTCC--TCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815050 37 + 172585720 -TCTGCCTCCCCACA-GCATCTGTAGTAGTCTGTCC--TCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104538 37 - 170955103 -TCTGCCTCCCCACA-GCATCTGTAGTAGTCTGTCC--TCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     353391 37 +   1495729 -TCTGCCTCCCCACA-GCATCTGCAGTAGTCTGTCC--TCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453238 37 -    863181 -TCTGCCTCCCCACA-GCGTCTGTAGTAGTCTGTCC--TCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603494 37 -  71996105 -TCTGCCTCCCCACA-GCATCTGTAATAGTCTGTCC--TCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302286 37 -    735854 -TCTGCCTCCCCACA-GCGTCTGTAGTAGTCTGTCC--TCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     241854 37 -   1829203 -TCTGCCTCCCCACA-ACATCTGTAGTAGTCTGTCC--TCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30434912 37 + 171630274 -TCGGCCTCCCCACA-GCACCTGCAGCAGTCTGTCC--TCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           246354 37 +    515838 -TCTGCCTCCCCACA-GCACCTGCAGCAGTCTGTCC--TCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     872825 37 -   1771730 -TCTGCCTCCCCACA-GCACCTGCAACAGTCTGTCC--TCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     370865 34 -    383796 ----GCCTCCCCACA-GCACCTGCAGCACTCTGTCC--TCT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               332183 37 + 123392446 -TCTGACTCCCCACA-ATGCCTGTGGCAGTCTGTCC--TCT
i micMur3.chr6             I 387 C 0
s proCoq1.NW_012149775v1     137497 37 -   1411461 -TCTGACTTCCCACA-ACACCTGTGGCAGTCTGTCC--TCT
i proCoq1.NW_012149775v1   C 0 I 84
s otoGar3.GL873550           290270 37 +  18854210 -TCTGCTTCCCCACA-ACATCTGTAGCAGTCTGTCC--TCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58089470 40 -  94987271 -CCCACCTACCCACACACACACACATCAGCTTGCCTGACCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26323154 37 +  26524999 CTTATTTCCCCCACA-GC-TCAGGGACAGTCTGTCT--CCT
i canFam3.chr35            C 0 C 0
e dasNov3.JH580105            33616 1269 -     45298 I

a score=839225.000000
s hg38.chr6_GL000254v2_alt  1457662 81 +   4827813 GTTGA-TTTTTT---CTCTGTATGTCTCCAGTATGCTGGTGTCTC---CGTGCCCATTCTTTGCT------TTGCCAATTCTGTCTATATGTTC
s panTro5.chr6             30327113 81 + 175400573 GTTGA-TTTTTT---CTCTGTATGTCTCCAGTATGCTGGTGTCTC---CGTGCCCATTCTTTGCT------TTGCCAATTCTGTCTATATGTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30561476 81 + 173848474 GTTGA-TTTTTT---CTCTGTATGTCTCCAGTATGCTGGTGTCTC---CGTGCCCATTCTTTGCT------TTGCCAATTCTGTCTATATGTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268537 81 +   2037526 GTTGA-TTTTTT---CTCTGTATGTCTCCAGTATGCTGGTGTCTC---CGTGCCCATTCTTTGCT------TTGCCACTTCTGTCTATATGTGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935571 81 + 122973662 GTTGA-TTTTTT---CTCTGTATGTCTCCAGTACGCTGGTGTCTC---CGTGCCCATTCTTTGCT------TTGCCAATTCTGTCTATATGTGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815087 81 + 172585720 GTTGA-TTTTTT---CTCTGTACGTCTCCAGGATGCTGGTGTCTC---CACGCCCATTCTTTGCT------TTGCCAATTCTGTCTATATGTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104575 81 - 170955103 GTTGA-TTTTTT---CTCTGTACGTCTCCAGGATGCTGGTGTCTC---CACGCCCATTCTTTGCT------TTGCCAATTCTGTCTATATGTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     353428 81 +   1495729 GTTGA-TTTTTT---CTCTGTACGTCTCCAGGATGCTGGTGTCTC---CATGCCCATTCTTTGCT------TTGCCAATTCTGTCTATATGTGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453275 81 -    863181 GTTGA-TTTTTT---CTCTGTACGTCTCCAGGATGCTGGCGTCTC---CACGCCCATTCTTTGCT------TTGCCAGTTCTGTCTATATGTGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603531 81 -  71996105 GTTGA-TTTTTT---CTCTGTACGTCTCCAGGATGCTGGTGTCTC---CACGCCCATTCTTTGCT------TTGCCAGTTCTGTCTATATGTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302323 81 -    735854 GTTGA-TTTTTT---CTCTGTACGTCTCCAGGATGCTGGTGTCTC---CACGCCCATTCTTTGCT------TTGCCAGTTCTGTCTATATGTGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     241891 81 -   1829203 GTTGA-TTTTTT---CTCTGTACGTTTCCAGGATGCTGGTGTCTT---CACGCCCATTCTTCGCT------TTGCCAGTTCTGTCTATATGTGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30434949 82 + 171630274 GTTAGTTTTTTT---CCCTGTATGTCTCCAATGGGCTGGTGTCTC---CATGCCCGTTCTTCGCT------TTGCCAATTCTGTCTACATGTGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           246391 81 +    515838 GTTAG-TATCTT---CCCTGTATGTCTCCAATACGCTGATGTCTC---CATGCCCATTCTTCGCT------TTGCCAGTTCTGTCTATATGTGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     872862 81 -   1771730 GTCAG-TTTTTT---CCCTGCGTGTCTCCAGTGCGCTGGTGTCTC---CATGCCTGTTCTTTGCT------TTGCCAGTTCTGTCTATATGTGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     370899 80 -    383796 GTTAG-TTTTTC---CCCTGTATGTCTCCAATACTCTGGTGTCTC---CATGCTCGTTCTTTGCT------TTGCCAATTCTGT-TATATAAGC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               332220 81 + 123392446 CTTGG-GGTTCT---CCCTGCACGTCCTCAGCACTCTGGTGTCTG---TGTGCCCATTCTTGGCT------TTGCCTAGTCTTTATCTGTGTTC
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           290307 80 +  18854210 CGTGG-GTTTTTTTCCCCTGCATGTCTTCAACA--CTAGTGTCTG---CATGCCCATTCTTAGGT------CTGCCTATTCTTTATCTGTGT--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58089510 89 -  94987271 GTGGA-CTTTAG---CTTGACAAGGAAAGTATCAGCCAGGGTCACCGACATTTCCATTAGTAGCTCAACACTTCTTAACCCTTCCTCT-TGCTC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26323191 45 +  26524999 -TTGG-GTTCTC---TGCTCTAGGGC------------------C---CCTGCCCATTCTCTGCT---------CCAGGC--------------
i canFam3.chr35            C 0 C 0
e dasNov3.JH580105            33616 1269 -     45298 I
e proCoq1.NW_012149775v1     137534 84 -   1411461 I

a score=831911.000000
s hg38.chr6_GL000254v2_alt  1457743 60 +   4827813 TTCTT------------------CTTCCTTCTTGGTGCTTCTCTGATCC--CTGACTTGCCTT---CTATGGCTTTTGTTATG
s panTro5.chr6             30327194 60 + 175400573 TTCTT------------------CTTCCTTCTTGGTGCTTCTCTGATCC--CTGACTTGCCTT---CTATGGCTTTTGTTATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30561557 60 + 173848474 TTCTT------------------CTTCCTTCTTGGTGCTTCTCTGATCC--CTGACTTGCCTT---CTATGGCTTTTGTTATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268618 60 +   2037526 TTCTT------------------CTTCCTTCTTGGTGCTTCTCTGATCC--CTGACTTGCCTT---CTATGGCTTTTGTTATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935652 63 + 122973662 TTCTT------------------CTTCCTTCTTGGTGCTTCTCTGATCC--CTGACTTGCCTTCTCCTATGGCTTTTGTTATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815168 63 + 172585720 TTCTT------------------CTTCCTTCTTGGTGCTTCTCTGATCC--CTGACTTGCCTTCTCCTATGGCTTTTGTTCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104656 63 - 170955103 TTCTT------------------CTTCCTTCTTGGTGCTTCTCTGATCC--CTGACTTGCCTTCTCCTATGGCTTTTGTTCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     353509 63 +   1495729 TTCTT------------------CTTCCTTCTTGGTGCTTCTCTGATCC--CTGACTTGCCTTCTCCTATGGCTTTTGTTCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453356 63 -    863181 TTCTT------------------CTTCCTTCTTGGTGCTTCTCTGATCC--CTGACTTGCCTTCTCCTATGGCTTTTGTTCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603612 63 -  71996105 TTCTT------------------CTTCCTTCTTGGTGCTTCTCTGATCC--CTGACTTGCCTTCTCCTATGGCTTTTGCTCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302404 63 -    735854 TTCTT------------------CTTCCTTCTTGGTGCTTCTCTGATCC--CTGACTTGCCTTCTCCTATGGCTTTTGTTCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     241972 63 -   1829203 TTCTT------------------CTTCCTTCTTGGTGCTTCTCTGATCC--CTGACTTGCCTTCTCCTATGGCTTTTGTTCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435031 63 + 171630274 TTCCT------------------CTTCCTTCTTGGTGCTTCTCTGATCC--CTGACTCGCCTTCCTCTATGGCTTTCGTTCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           246472 57 +    515838 TTCCT------------------CTTCCTTCTTGGTGCTTCTCTGATCC--CTGACTTGTCTTCC-CCATGGC-----TTCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     872943 63 -   1771730 TTCTT------------------CTTCCTTCTTGGTGCTTCTCTGGTCC--CTGACTCGCCTTCCCCTATGGCTTCTGTTCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     370979 63 -    383796 TTCTT------------------CTTCCTTCTTGGTGCTTCTCTGATCC--CTGACTCGCCTTCCCCTATGGCTTCTGTTCTG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               332301 61 + 123392446 --CTT------------------CCACCTCCTTGGTGCATCTCTGATCC--CCGACTTCACTTCCCCTGTGGCTTTTGTTCTG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     137618 63 -   1411461 TTCTT------------------CCTCCTTCTTGGTGCATCTCTGATCC--ACGACTTCACTTCCCCTGTGGCTTTTGTTCTG
i proCoq1.NW_012149775v1   I 84 C 0
s otoGar3.GL873550           290387 63 +  18854210 TTCTT------------------CCTCCTTCTCGTTGCATCTCTGATCC--CTGACTTAACTTCCTTAATAGCTTTTGTTCTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58089599 75 -  94987271 -TTTTGTGCCCAGGAAGACGGTGCTCCCTCCTTCCTCCCTCTCCATCCCCACTAACCTCTCCTCT-------CTTCTGTTCTG
i mm10.chr17               C 0 I 318
s canFam3.chr35            26323236 47 +  26524999 GTCTT------------------CCTGCTTCTTGGTG-----CTGTTCC--CTAGATTGATTTCTGGTGGAG-----------
i canFam3.chr35            C 0 C 0
e dasNov3.JH580105            33616 1269 -     45298 I

a score=525888.000000
s hg38.chr6_GL000254v2_alt  1457803 39 +   4827813 ACTAGGAATATATCAACCAGTGTTACATACATTCCCTTC
s panTro5.chr6             30327254 39 + 175400573 ACTAGGAATATATCAACCAGTGTTACATACATTCCCTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30561617 39 + 173848474 ACTAGGAATATATCAACCAGTGTTACATACATTCCCTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268678 39 +   2037526 ACTAGGAATATATCAACCAGTGTTACATACATTCCCTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935715 39 + 122973662 ACTAGGAATATATCAACCAGTGTTACATACATTCCCTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815231 39 + 172585720 ACTAGGAATATATCAACCAGTGTCACATACATTCCCTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104719 39 - 170955103 ACTAGGAATATATCAACCAGTGTCACATACATTCCCTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     353572 39 +   1495729 ACTAGGAATATATCAACCAGTGTCACATACATTCCCTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453419 39 -    863181 ACTAGGAATATATCAACCAGTGTCACATACATTCCCTTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603675 39 -  71996105 ACTAGGAATATATCAACCAGTGTCACATACATTCCCTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302467 39 -    735854 ACTAGGAATATATCAACCAGTGTCACATACATTCCCTTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     242035 39 -   1829203 ACTAGGAATATATCAACCAGTGTCACATACATTCCCTTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435094 39 + 171630274 ACTAGGAATACATCAACCAGTGTCACATACATTCCCTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           246529 39 +    515838 ACTAGGAATACATCAACCAGTGTCACATACATTCCCTTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873006 39 -   1771730 ACTAGGAATACATCAACCAGTGTCACATACATTCCCTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     371042 39 -    383796 ACTAGGAATACATCAACCAGTGTCACAGACATTCCCTTC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               332362 39 + 123392446 ACCAGGAAAATATCAGCCAGTGTCACCTACACTCCCTTC
i micMur3.chr6             C 0 I 123
s proCoq1.NW_012149775v1     137681 39 -   1411461 ACCAGGAAAATATCAGCCAGTGTCACCTACATCGCCTTC
i proCoq1.NW_012149775v1   C 0 I 8
s otoGar3.GL873550           290450 39 +  18854210 ACTAGGAAAATATCAGCTCGAGTCACCTGTCCTCCCTTC
i otoGar3.GL873550         C 0 I 8
s canFam3.chr35            26323283  4 +  26524999 ------------------------------GCTC-----
i canFam3.chr35            C 0 C 0
e mm10.chr17               58089674 318 -  94987271 I
e dasNov3.JH580105            33616 1269 -     45298 I

a score=795014.000000
s hg38.chr6_GL000254v2_alt  1457842 66 +   4827813 TGTACA--TTCATGTCCTAACCTTCCCTCCTTGCCTCTTGTCTT--AAGGAAAAGGGTGCTTCCT-CCCTA
s panTro5.chr6             30327293 66 + 175400573 TGTACA--TTCATGTCCTAACCTTCCCTCCTTGCCTCTTGTCTT--AAGGGAAAGGGTGCTTCCT-CCCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30561656 66 + 173848474 TGTACA--TTCATGTCCTAACCTTCCCTCCTTGCCTCTTGTCTT--AAGGGAAAGGGTGCTTCCT-CCCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268717 65 +   2037526 TGTACA--TTCATGTCCTAACCTTCCCTCCTTGCCTCTTGTCTT--AAGGAAAA-GGTGCTTCCT-CCCTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935754 66 + 122973662 TGTACA--TTCATGTCCTAACCTTCCCTCCTTGCCTCTTGTCTT--AAGGAAAAGGGTGCTTCCT-CCCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815270 68 + 172585720 TGTACA--TTCATGCCCTAACCTTCCCTCCTTGCCTCTTGTCTTAAAAAAAAAAGGGTACTTCCT-CCCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104758 68 - 170955103 TGTACA--TTCATGCCCTAACCTTCCCTCCTTGCCTCTTGTCTTAAAAAAAAAAGGGTACTTCCT-CCCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     353611 68 +   1495729 TGTACA--TTCATGCCCTAACCTTCCCTCCTTGCCTCTTGTCTTAAAAAAAAAAGGGTACTTCCT-CCCTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453458 66 -    863181 TGTACA--TTCATGCCCTAACCTTCCCTCCTTGCCTCTTGTCTT--AAGGAAAAGGGTGCTTCCT-CCCTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603714 67 -  71996105 TGTACA--TTCATGCCCTAACCTTCCCTCCTTGCCTCTTGTCTT--AAGGAAAAGGGTGCTTCCTCCCCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302506 60 -    735854 TGTACA--TTCATGCCCTAACCTTCCCTCCTTGCCTCTTGTCTT--------AAGGGTGCTTCCT-CCCTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     242074 66 -   1829203 TGTACA--TTCATGCCCTAACCTTCCCTCCTTGCCTCTTGTCTT--AAGGAAAAGGGTGCTTCCT-CCCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435133 66 + 171630274 TGTACA--TTTGTGTCCTAACCTTCCCTCCTTGCCTCTTGTCTT--AAGGAAAAAGATGCTTCCT-TCCTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           246568 66 +    515838 TGTACA--TTCACATCCTAACCTTCCCTCCTTCCCTCTTGTCTT--AAGGAAAAAGATGCTTCCT-CCCTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873045 66 -   1771730 TGTACA--TTCATGTCCTAACCTTCCCTCCTTGCCTCTTGTCTT--GAGGAAAAAGATGCTTCCT-CCCTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     371081 66 -    383796 TGTACA--TTCATGTCCTAACCTTCCCTCCTTGCCTCTTGCCTT--AAGGAAAAAGATGCTTCCT-CCCTA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     137728 66 -   1411461 AACACG--TTCATGTCTTGACCTTTCCTCCTTCCTTCTTGTCTT--AAGGAAAAAGGTGCTTCCT-CCCTA
i proCoq1.NW_012149775v1   I 8 C 0
s otoGar3.GL873550           290497 66 +  18854210 AACACA--TTTATGTCTTAACCTTAACTCCATCCTTCTTGTCTT--ACCAAAAGAGGTTCTTCTT-CCCTA
i otoGar3.GL873550         I 8 C 0
s canFam3.chr35            26323287 62 +  26524999 TGCACAAGTTTGTATCTTAACCT------CTTCCTTCCTGTGTC--AAGGGGAGAGGTCAGGTCA-CCCTG
i canFam3.chr35            C 0 I 326
e micMur3.chr6               332401 123 + 123392446 I
e mm10.chr17               58089674 318 -  94987271 I
e dasNov3.JH580105            33616 1269 -     45298 I

a score=80039.000000
s hg38.chr6_GL000254v2_alt  1457908 7 +   4827813 CCCCTTC
s panTro5.chr6             30327359 7 + 175400573 CCCCTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30561722 7 + 173848474 CCCCTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268782 7 +   2037526 CCCCTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935820 7 + 122973662 CCCCTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815338 7 + 172585720 CCCCTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104826 7 - 170955103 CCCCTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     353679 7 +   1495729 CCCCTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453524 7 -    863181 CCCCTTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603781 7 -  71996105 CCCTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302566 7 -    735854 CCCCTTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     242140 7 -   1829203 CCCCTTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435199 7 + 171630274 CCTCTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           246634 7 +    515838 CCTCTTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873111 7 -   1771730 CGTCTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     371147 7 -    383796 CCTCTTC
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     137794 7 -   1411461 TCCCTTC
i proCoq1.NW_012149775v1   C 0 I 43
s otoGar3.GL873550           290563 7 +  18854210 TGTCTCC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               332401 123 + 123392446 I
e mm10.chr17               58089674 318 -  94987271 I
e dasNov3.JH580105            33616 1269 -     45298 I
e canFam3.chr35            26323349 326 +  26524999 I

a score=55699.000000
s hg38.chr6_GL000254v2_alt  1457915 6 +   4827813 TCTTGG
s panTro5.chr6             30327366 6 + 175400573 TCTTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30561729 6 + 173848474 TCTTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268789 6 +   2037526 TCTTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935827 6 + 122973662 TCTTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815345 6 + 172585720 CCTTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104833 6 - 170955103 CCTTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     353686 6 +   1495729 CCTTAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453531 6 -    863181 CCTTAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603788 6 -  71996105 CCTTAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302573 6 -    735854 CCTTAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     242147 6 -   1829203 CCTTAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435206 6 + 171630274 CCTTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           246641 6 +    515838 CCTTGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873118 6 -   1771730 CCTTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     371154 6 -    383796 CCTTGG
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           290570 6 +  18854210 CTCTGG
i otoGar3.GL873550         C 0 I 372
e micMur3.chr6               332401 123 + 123392446 I
e mm10.chr17               58089674 318 -  94987271 I
e dasNov3.JH580105            33616 1269 -     45298 I
e proCoq1.NW_012149775v1     137801 43 -   1411461 I
e canFam3.chr35            26323349 326 +  26524999 I

a score=337912.000000
s hg38.chr6_GL000254v2_alt  1457921 41 +   4827813 TATAGCTTCCACCCTCACCTCCTCACTCTCCATTATCAGCC
s panTro5.chr6             30327372 41 + 175400573 TACAGCTTCCACCCTCACCTCCTCACTCTCCATTATCAGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30561735 41 + 173848474 TACAGCTTCCACCCTCACCTCCTCACTCTCCATTATCAGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268795 41 +   2037526 TATAGCTTCCACCCTCACCTTCTCACTCTCCATTATCAGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935833 41 + 122973662 TATAGCTTCCACCCTCACCTCCTCACTCTCCATTATCAGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815351 41 + 172585720 TATAGCTTCCACCCTCACCTCCCCACTCTCCATTATCAGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104839 41 - 170955103 TATAGCTTCCACCCTCACCTCCCCACTCTCCATTATCAGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     353692 41 +   1495729 TATAGCTTCCACCCTCACCTCCCCACTCTCCATTATCAGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453537 41 -    863181 TATAGCTTCCACCCTCACCTCCCCACTCTCCATTATCAGCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603794 41 -  71996105 TATAGTTTCCACCCTCACCTCCCCACTCTCCATTATCAGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302579 41 -    735854 TATAGCTTCCACCCTCACCTCCCCACTCTCCATTATCAGCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     242153 41 -   1829203 TATAGCTTCCACCCTCACCTCCCCACTCTCCATTATCAGCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435212 30 + 171630274 TCTAACTTCCACCCTC-CCT----------CATTATTGGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           246647 33 +    515838 TCTAGCTTCCCTCCCC-TCT-------CTCCATTATTGGCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873124 40 -   1771730 CCTAGCTTCCACCCTC-CCTCCCTTATCTCCATTATCAGCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     371160 40 -    383796 TCTAGCTTCCACCCTC-CCTCACCTCTCTCCATTATTGGCC
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               332401 123 + 123392446 I
e mm10.chr17               58089674 318 -  94987271 I
e dasNov3.JH580105            33616 1269 -     45298 I
e proCoq1.NW_012149775v1     137801 43 -   1411461 I
e canFam3.chr35            26323349 326 +  26524999 I
e otoGar3.GL873550           290576 372 +  18854210 I

a score=93505.000000
s hg38.chr6_GL000254v2_alt  1457962 7 +   4827813 GTCTGTC
s panTro5.chr6             30327413 7 + 175400573 GTCTGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30561776 7 + 173848474 GTCTGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268836 7 +   2037526 GTCTGTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935874 7 + 122973662 GTCTGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815392 7 + 172585720 GCCTGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104880 7 - 170955103 GTCTGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     353733 7 +   1495729 GTCTGTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453578 7 -    863181 GTCTGTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603835 7 -  71996105 ATCTGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302620 7 -    735854 GTCTGTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     242194 7 -   1829203 ATCTGTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435242 7 + 171630274 GTCTGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           246680 7 +    515838 ATCTGTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873164 7 -   1771730 ATCTGTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     371200 7 -    383796 GTCTGTC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               332524 7 + 123392446 GTCTGTC
i micMur3.chr6             I 123 C 0
s proCoq1.NW_012149775v1     137844 7 -   1411461 GTCTGTC
i proCoq1.NW_012149775v1   I 43 C 0
e mm10.chr17               58089674 318 -  94987271 I
e dasNov3.JH580105            33616 1269 -     45298 I
e canFam3.chr35            26323349 326 +  26524999 I
e otoGar3.GL873550           290576 372 +  18854210 I

a score=203118.000000
s hg38.chr6_GL000254v2_alt  1457969 16 +   4827813 CCCAGCAAGAAGTACA
s panTro5.chr6             30327420 16 + 175400573 CCCAGCAAGAAGTACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30561783 16 + 173848474 CCCAGCAAGAAGTACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268843 16 +   2037526 CCCAGCAAGAAGTACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935881 16 + 122973662 CCCAGCAAGAAGTACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815399 16 + 172585720 CCCAACAAGAAGTACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104887 16 - 170955103 CCCAACAAGAAGTACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     353740 16 +   1495729 CCCAACAAGAAGTACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453585 16 -    863181 CCCAACAAGAAGTACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603842 16 -  71996105 CCCAACAAGAAGTACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302627 16 -    735854 CCCAACAAGAAGTACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     242201 16 -   1829203 CCCAACAAGAAGTACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435249 16 + 171630274 CCCAGCAAGAAGTACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           246687 16 +    515838 CCCAGCAAGAAGTATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873171 16 -   1771730 CCCAGCGAGGAGTACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     371207 16 -    383796 CCCAGCGAGAAGTACA
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               332531 16 + 123392446 CCTACCAAGAAGCACA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     137851 16 -   1411461 CCCACCAAGAAGCACA
i proCoq1.NW_012149775v1   C 0 C 0
s dasNov3.JH580105            34885 14 -     45298 CCCGACAAGGGACT--
i dasNov3.JH580105         I 1269 C 0
e mm10.chr17               58089674 318 -  94987271 I
e canFam3.chr35            26323349 326 +  26524999 I
e otoGar3.GL873550           290576 372 +  18854210 I

a score=380620.000000
s hg38.chr6_GL000254v2_alt  1457985 27 +   4827813 CCATTAATTTTTGTCTGATCTTAATCT
s panTro5.chr6             30327436 27 + 175400573 CCATTAATTTTTGTCTGATCTTAATCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30561799 27 + 173848474 CCATTAATTTTTGTCTGATCTTAATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268859 27 +   2037526 CCATTAATTTTTGTCTGATCTTAATCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935897 27 + 122973662 CCATTAATTTTTATCTGATCGTAATCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815415 27 + 172585720 CCATTAATTTTTATCTGATCTTAATCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104903 27 - 170955103 CCATTAATTTTTATCTGATCTTAATCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     353756 27 +   1495729 CCATTAATTTTTATCTGATCTTAATCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453601 27 -    863181 CCATTAATTTTTATCTGATCTTAATCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603858 27 -  71996105 CCATTAATTTTTATCTGATCTTAATCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302643 27 -    735854 CCATTAATTTTTATCTGATCTTAATCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     242217 27 -   1829203 CCATTAATTTTTATCTTATCTTAATCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435265 27 + 171630274 CCATTAAATTTTTTTTAATCTTAATTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           246703 27 +    515838 CCATTAATTTTTATTTGATCTTAATTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873187 26 -   1771730 CCATTAATATTTATCTGATC-TAATTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     371223 27 -    383796 CCATTAATTTTTATCTGATCTTAATTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               332547 27 + 123392446 CCATTAATTTTTACCTGATCTTAATCT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     137867 27 -   1411461 CCGTTATTTTTTACCTGATCTTAATCT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           290948 27 +  18854210 CCCTTAATTATTATCTGATCTTAATCT
i otoGar3.GL873550         I 372 C 0
s dasNov3.JH580105            34899 27 -     45298 CTGCTGATTCTTACTGGACTTTAATTT
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58089674 318 -  94987271 I
e canFam3.chr35            26323349 326 +  26524999 I

a score=3425224.000000
s hg38.chr6_GL000254v2_alt  1458012 259 +   4827813 TAGGTCAAACAGGGCTTGTGGATGATTATTATAATAATAGCCagagtgatcatacactctgctttgcctggaaccatcctgggtttcactttgtcctggtgtaa----ttattaatagcacctcctttcactttcagaaatgtccagtttggactataaattatgtggctcccc---tTATAGCAACTGCTGTAAACCAAAGACTTTCAGAAATGTTATACCT-----------------------------------------------CCAGACCTTTCTTTTT-GTTTGTTTTAGGGTTAAATTAAAACAG
s panTro5.chr6             30327463 259 + 175400573 TAGGTCAAACAGGGCTTGTGGATGATTATTATAATAATAGCCagagtgatcatacactctgctttgcctggaaacatcctgggtttcactttgtccttgtgtaa----ttattaatagcacctcctttcactttcagaaatgtccagtttggactataaattatgtggctcccc---tTATAGCAACTGCTGTAAACCAAAGACTTTCAGAAATGTTATACCT-----------------------------------------------CCAGACCTTTCTTTTT-GTTTGTTTTAGGGTTAAATTAAAACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30561826 259 + 173848474 TAGGTCAAACAGGGCTTGTGGATGATTATTATAATAATAGCCagagtgatcatacactctgctttgcctggaaacatcctgggtttcactttgtccttgtgtaa----ttattaatagcacctcctttcactttcagaaatgtccagtttggactataaattatgtggctcccc---tTATAGCAACTGCTGTAAACCAAAGACTTTCAGAAATGTTATACCT-----------------------------------------------CCAGACCTTTCTTTTT-GTTTGTTTTAGGGTTAAATTAAAACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     268886 258 +   2037526 TAGGTCAAACAGGGCTTGTGGATGATTATTATAATAATAGCCagagtgatcatacactctgctttgcctggaaccatcctgggtttcactttgtcctggtgtaa----ttattaacagcacctcctttcactttcagaaatgtccagtttggactataaattatgtggct-ccc---ttaTAGCAACTGCTGTAAACCAAAGACTTTCAGAAATGTTATACCT-----------------------------------------------CCAGACCTTTCTTTTT-GTTTGTTTTAGGGTTAAATTAAAACAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74935924 253 + 122973662 TAGGTCAAACAGGGCTTGTGGATGATT-TTATAATAATAGCCagagtgatcatacactctgctttgcctggaaccatcctgggtttcactttgtcctggtgtaa----ttattaatagcacctcctttcactttcagaaatgtccagtttggactataaattacat-----CCC---TTACAGCAACTGCTGTAAACCAAAGACTTTCAGAAATGTTATACCT-----------------------------------------------CCAGACCTTTCTGTTT-GTTTGCTTTAGGGTTAAATTAAAACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815442 257 + 172585720 TAG-TCAAACAGGGCTTGTGGATGATT-TTGTAATAATAACCagagtgatcatacactctgctttgcctggaaccatcctgggtttcactttgtcctggtgtaa----ttattaatagcacctcctttcactttcagaaatgtccagttcagactataaattacgtggctcccc---tTATAGCAACTGCCATAAACCAAAGACTTTCAGAAATGTTATATCT-----------------------------------------------CCAGACCTTTCTGTTT-GTTTGCTTTCGGGTTAAATTAAAACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30104930 257 - 170955103 TAG-TCAAACAGGGCTTGTGGATGATT-TTGTAATAATAACCagagtgatcatacactctgctttgcctggaaccatcctgggtttcactttgtcctggtgtaa----ttattaatagcacctcctttcactttcagaaatgtccagttcagactataaattacgtggCTCCTC---TTATAGCAACTGCCATAAACCAAAGACTTTCAGAAATGTTATATCT-----------------------------------------------CCAGACCTTTCTGTTT-GTTTGCTTTCGGGTTAAATTAAAACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     353783 257 +   1495729 TAG-TCAAACAGGGCTTGTGGATGATT-TTGTAATAATAACCagagtgatcatacactctgctttgcctggaaccatcctgggtttcactttgtcctggtgtaa----ttattaatagcacctcctttcactttcagaaatgtccagttcagactataaattacgtggctcccc---tTATAGCAACTGCCATAAACCAAAGACTTTCGGAAATGTTATATCT-----------------------------------------------CCAGACCTTTCTGTTT-GTTTGCTTTCGGGTTAAATTAAAACAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453628 258 -    863181 TAGTTCAACCGGGGCTTGTGGATGATT-TTGTAATAATAGCCagagtgatcatacactctgctttgcctggaaccatcctgggtttcactttgtcctggtgtaa----ttattaatagcacctcctttcactttcagaaatgtccagtttggactgtaaattacgtggctcccc---tTATAGCAACTGCCGTAAACCGAAGACTTTCAGAAATGTTATATCT-----------------------------------------------CCAGACCTTTCTGTTT-GTTTGCTTTAGGATTAAATTAAAACAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29603885 258 -  71996105 TAGGTCAAACAGGGTTTGTGGATGATT-TTGTAACAATAGCCagagtgatcatacactccgctttgcctggaaccatcctgagtttcactttgtcctggtgtaa----ttattagtagcacctcctttcactttcagaaatgtccagtttggactgtaaattacgtggctcccc---tTATAGCAACTGCCGTAAACCAAAGACTTTCAGAAATGTTATATCT-----------------------------------------------CCAGACCTTTCTGTTT-GTTTGCTTTAGGGTTAAATTAAAACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302670 258 -    735854 TAGGTCAAACAGGGCTTGTGGATGATT-TTGTAATAATAGCCagagtaatcatacactctgctttgcctggaaccatcctgggtttcactttgtcctggtgtaa----ttattaatagcacctcctttcactttcagaaatgtccagtttggactgtaaattacgtggctcccc---tTATAGCAACTGCCGTAAACCAAAGACTTTCAGAAATGTTATATCT-----------------------------------------------CCAGATCTTTCTGTTT-GTTTGCTTTAGGGTTAAATTAAAACAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     242244 258 -   1829203 TAGGTCAAACAGGGCTTGTGGATGATT-TTATAATAATAGCCagagtgatcatacactctgctttgcctggaaccatcctgggtttcactttgtcctggtgtaa----ttattaatagcacctcctttcactttcagaaatgtccagtttggactgtaaattaCGTTACTCCCC---TTATAGCAACTGCCGTAAACCAAAGACTTCCAGAAATGTTATATCT-----------------------------------------------CCAGACCTTTCTGTTT-GTTTGCTTTAGGGTTAAATTAAAACAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435292 255 + 171630274 TAGGTCAAACAGGGCTTGTGGATGATT-TTATAATAATAGTC--Agtgattatacattctgctttgcctggagccatcctgggtttcactttgtcctggtgtaa----ttattaatagcacctcctttcattttcagaaatgtccagtttggactgtgaattatgtggttcccctaATCATAGCAACTGTTGTAAACCAAAGACTTTCAGAAATGTTATACCT-----------------------------------------------CCAGAC----CTGTTT-ATTTGCTTTAGGGTTGAATTAAAACAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           246730 261 +    515838 TAGGTCAAACAGAGCTTGTGGATGATT-TTATAATAATAGCCagagtgatcatacattctgctttgcctggagccatcttgggtttcactttgttctggtataattatttattaataacacttcctttcattttcagaaatgtccagtttggatgatgaattatgtggctcccctaATTATAGCAACTGCTGTAAACCAAAGACTTTCAGAAATGTTATACCT-----------------------------------------------CCAGAC----CTGTTT-ATTTGCTTTAAGGTTAAATTAAAACAG
i saiBol1.JH378341         C 0 I 200
s cebCap1.NW_016107755v1     873213 257 -   1771730 TAGGTCAAACAGGGCTTGTGGATGATT-TTATAATAATAGCCagagtaatcatacattctgctttgcctggagccatcctgggtttcactttgtcctggtgtaa----ttattaatagcacctcctttcattttcagaaatgtccagtttggacgatgaattatgtggttcccctaATTATAGCAACTGCTGTAAACCAAGGACTTTCAGAAATGTTATACCT-----------------------------------------------CCAGGC----CTGTTT-ATTTGCTTTAGGGTTGAATTAAAACAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     371250 257 -    383796 TAGGTCAAACAGGGCTTGTGGATGATT-TTATAACAATAGCGagagtgatcatacattctgctttgcctggagccatactgggtttcgctttgtcccggtgtaa----ttattaatagcacctcctttcattttcagaaatgtccagtttggactatgaattatgtggttcccctaATTATAGTAACTGCTGTAAATCAAAGACTTTCAGAAATGTTACACCT-----------------------------------------------CCAGAC----CTGTTT-ATTTGCTTTAGGGTTGAATTAAACCAG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               332574 254 + 123392446 T-----AAATGGGAATTGTGGGTGATT-TTATGATTATAGCCagagtgatcatacattctgctttgcctggagcagtcctgggtttcactttgtcctgttgtga-----tattaatagttcctcctttcatcatcagaagtgtccagtctggatgataaattatatggttaccctaATTATAGCAACTGTTGTAAGCCAAAGACTTTCAGAAATGTTATACCT-----------------------------------------------CTAGGCCTTTCTCTTG-GTTTGC-TTAAGGTCAAATGAAAGCAG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     137894 244 -   1411461 T-----AAATGGGAATTGTGGGTGATT-TTATGATTATAGCCagagtgatcagacattctgctttg-----------cctgggtttgggtttgtcctggtgtaa-----tattaatagtccctcctttcattctcagaagtgtccagtctggatgataaattatatggttaccctaATTATAGCAACTTTTGTAAGCCAAAGACTTTCAGAAATGTTATACCT-----------------------------------------------CTAGGCCTTTCTGTTG-GTTTGCTTTAAGGTCAGATGAAAGCAG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           290975 259 +  18854210 TAAGTCAAATAGGGATTGTGAGTGATT-TTATGACTAAAGCCagagtgatcataca-tctgctttgcctggaattgtcctgggtttcactttgtcctagtgtga----ttattaatagtgattcctttcatccttggaagtgttcagtttggatggtaaattatatggttactctaATTATAGCAACTGTTGTAAGCCAAATATTTTCAGAAATGTTATATCT-----------------------------------------------CCAGGCTTTTCTCTTT-GTTTGCTGTATGCTCA-ATGACCATAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58089992 299 -  94987271 CAGGTCACACAGGG--TGTGGAGGATT-TTATGGCTATAGCCCCAACAATAGTTCCTTGTCAtttgccagggacagtcttggctttacctttgtcccctcataa----atgtcaacagcccttcctttcattctcaaaagtatccA-CTCATATTATAGA------GGTTACTTTGATTACAGCAACTACTGAAAGCTGAACACTTTCAGAAATACTACACCTAcacttctcagccttttggctaagatcaagtgtagAAATACCAGACCTCAGGCCTGTCTATTTCATTCACTTTAAGGTTGAATTAAAGCA-
i mm10.chr17               I 318 C 0
s dasNov3.JH580105            34926 234 -     45298 TAGGTCAGTGAGGAA-------------TTAGAATTACGGCCTGAG-GGGCGAGCACTGCCTCTCGCGTCGGGACA-CCTGG--CCGGCTTTGT-CTGGCCCAC----CGGTGAAGAGCATCCCCTTGCATCCTCCAGAGCGGCAAGTCTGGACGGGAATGTCTACGGTTCCCC-GATTCCAGCAACGGGTGGAAGC---GCAGTTCCAGGGCTGCTGAACCC-----------------------------------------------CAGGG-----CTTCCT-GCTCCAGCCCGGACTGAACGAAACGT-
i dasNov3.JH580105         C 0 C 0
e canFam3.chr35            26323349 326 +  26524999 I

a score=279014.000000
s hg38.chr6_GL000254v2_alt  1458271 24 +   4827813 TCTAACATCTGTAAATTGTTTTAC---
s panTro5.chr6             30327722 24 + 175400573 TCTAACATCTGTAAATTGTTTTAC---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562085 24 + 173848474 TCTAACATCTGTAAATTGTTTTAC---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269144 24 +   2037526 TCTAACATCTGTAAATTGTTTTAC---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74936177 24 + 122973662 CCTAACATCTGTAAATTGTTTTAC---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815699 24 + 172585720 CCTAACATCTGTAAATTGTTTTAC---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30105187 24 - 170955103 CCTAACATCTGTAAATTGTTTTAC---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     354040 24 +   1495729 CCTAACATCTGTAAATTGTTTTAC---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453886 24 -    863181 CCTAACATCTGTAAATTGTTTTAC---
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29604143 24 -  71996105 CCTAACATCTGTAAATTGTTTTAC---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302928 24 -    735854 CCTAACATCTGTAAATTGTTTTAC---
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     242502 24 -   1829203 CCTAATATCTATAAATTGTTTTAC---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435547 24 + 171630274 CCTAACATCTGTATATTGTTTTAC---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           247191 24 +    515838 CCTAACATCTGCACATTGTTTTAT---
i saiBol1.JH378341         I 200 C 0
s cebCap1.NW_016107755v1     873470 24 -   1771730 CCTAACATCTACAAATTGTTTTAC---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     371507 24 -    383796 CCTAACATCTGTATATTGTTTTAC---
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               332828 22 + 123392446 CCTAACATT--TATAGTGTTTTAC---
i micMur3.chr6             C 0 I 11
s proCoq1.NW_012149775v1     138138 22 -   1411461 CCTAACATT--TACAGTGTTTTAC---
i proCoq1.NW_012149775v1   C 0 I 3
s otoGar3.GL873550           291234 24 +  18854210 TCTAACATTTGTATAGCACGCTGC---
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               58090291 21 -  94987271 ---AATATTTTTGTAAGGTTTTAT---
i mm10.chr17               C 0 I 3
s dasNov3.JH580105            35160 19 -     45298 --------TCCCACGGAGCTCCTCGGT
i dasNov3.JH580105         C 0 C 0
e canFam3.chr35            26323349 326 +  26524999 I

a score=53822.000000
s hg38.chr6_GL000254v2_alt  1458295 5 +   4827813 TTACA
s panTro5.chr6             30327746 5 + 175400573 TTATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562109 5 + 173848474 TTATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269168 5 +   2037526 TTATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74936201 5 + 122973662 TTATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815723 5 + 172585720 TTACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30105211 5 - 170955103 TTACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     354064 5 +   1495729 TTACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453910 5 -    863181 TTACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29604167 5 -  71996105 TTACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302952 5 -    735854 TTACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     242526 5 -   1829203 TTACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435571 4 + 171630274 -TATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           247215 5 +    515838 GTATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873494 5 -   1771730 TTATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     371531 5 -    383796 TTATA
i aotNan1.NW_018496904v1   C 0 C 0
s proCoq1.NW_012149775v1     138163 5 -   1411461 TTTAA
i proCoq1.NW_012149775v1   I 3 I 3
s otoGar3.GL873550           291260 5 +  18854210 TTTCA
i otoGar3.GL873550         I 2 I 4
s mm10.chr17               58090315 5 -  94987271 TTGCA
i mm10.chr17               I 3 C 0
s dasNov3.JH580105            35179 5 -     45298 TTAAA
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               332850 11 + 123392446 I
e canFam3.chr35            26323349 326 +  26524999 I

a score=261689.000000
s hg38.chr6_GL000254v2_alt  1458300 16 +   4827813 --CTCCTAAACTGCTGGC
s panTro5.chr6             30327751 16 + 175400573 --CTCCTAAACTGCTGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562114 16 + 173848474 --CTCCTAAACTGCTGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269173 16 +   2037526 --CTCCTAAACTGCTGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74936206 16 + 122973662 --CTCCTAAACTGCTGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815728 16 + 172585720 --CTCCTAAACTGCTGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30105216 16 - 170955103 --CTCCTAAACTGCTGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     354069 16 +   1495729 --CTCCTAAACTGCCGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453915 16 -    863181 --CTCCTAAACTGCTGGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29604172 16 -  71996105 --CTCCTAAACTGCCGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302957 16 -    735854 --CTCCTAAACTGCTGGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     242531 16 -   1829203 --CTCCTAAACTGCCGGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435575 16 + 171630274 --CTCCTAAACTGCTGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           247220 16 +    515838 --CTCCTAAACTGCTGGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873499 16 -   1771730 --CTCCTAAACTGCTGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     371536 16 -    383796 --CTCCTAAACTGCTGGC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               332861 16 + 123392446 --CTCCTAAGCTGCTAGC
i micMur3.chr6             I 11 C 0
s proCoq1.NW_012149775v1     138171 16 -   1411461 --CTCCGAAGCTGCTAGC
i proCoq1.NW_012149775v1   I 3 C 0
s otoGar3.GL873550           291269 16 +  18854210 --CTCTTAAACTGCTGGC
i otoGar3.GL873550         I 4 C 0
s mm10.chr17               58090320 16 -  94987271 --TTCATACTCAGCTGTC
i mm10.chr17               C 0 I 2
s dasNov3.JH580105            35184 18 -     45298 CTGTCCTGAGCCGCTGGC
i dasNov3.JH580105         C 0 C 0
e canFam3.chr35            26323349 326 +  26524999 I

a score=313193.000000
s hg38.chr6_GL000254v2_alt  1458316 22 +   4827813 CCCTAGAAGCAGAATTTAACTT
s panTro5.chr6             30327767 22 + 175400573 CCCTAGAAGCAGAATTTAACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562130 22 + 173848474 CCCTAGAAGCAGAATTTAACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269189 22 +   2037526 CCCTAGAAGCAGAATTTAACTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74936222 22 + 122973662 CCCTAAAAGCAGAATTTAACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815744 22 + 172585720 CCCTAGAAGCATAATTTAACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30105232 22 - 170955103 CCCTAGAAGCATAATTTAACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     354085 22 +   1495729 CCCTAGAAGCATAATTTAACTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453931 22 -    863181 CCCTAGAAGCATAATTTAACTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29604188 22 -  71996105 CCCTAGAAGCAGAATTTAACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302973 22 -    735854 CCCTAGAAGCATAATTTAACTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     242547 22 -   1829203 CCCTAGAAGCAGAATTTAACTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435591 22 + 171630274 CCCTAGAGGCAGAATTTAACTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           247236 22 +    515838 CCCTAGAGGCAGAACTTAACTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873515 22 -   1771730 CCCGAGAGGCAGAATTTAACTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     371552 22 -    383796 CCCTAGAGGCAGAATTTAACTT
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               332877 21 + 123392446 CCCTGGAGGC-AAATTTAACTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     138187 21 -   1411461 CCCTGGAGGC-AAATTTAACTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           291285 22 +  18854210 CCCTGCAGGTGGAATTTAATTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58090338 22 -  94987271 ATCTAGAGGtaaaatttaattt
i mm10.chr17               I 2 I 2309
s canFam3.chr35            26323675 17 +  26524999 CCCTA-----AGAATTGAACTT
i canFam3.chr35            I 326 C 0
s dasNov3.JH580105            35202 19 -     45298 -CCGCGCGGCAGGACTTCTC--
i dasNov3.JH580105         C 0 C 0

a score=1236300.000000
s hg38.chr6_GL000254v2_alt  1458338 90 +   4827813 TTGACAGGTTTTGTTTGACTGGCATGATGATTTAGAAAATAATGATAATGTAGATGCCTTTAGA--GAGGGTGGCTA-----TGTTCCCCACCG--CTC--
s panTro5.chr6             30327789 90 + 175400573 TTGACAGGTTTTGTTTGACTGGCATGATGATTTAGAAAATAATGATAAGGTAGATGCCTTTAGA--GAGGGTGGCTA-----TGTTCCCCACCG--CTC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562152 90 + 173848474 TTGACAGGTTTTGTTTGACTGGCATGATGATTTAGAAAATAATGATAAGGTAGATGCCTTTAGA--GAGGGTGGCTA-----TGTTCCCCACCG--CTC--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269211 90 +   2037526 TTGACAGGTTTTGTTTGACTGGCATGATGATTTAGAAAATAATGATAATGTAGATGCCTTTAGA--GAGGGTGGCTA-----TGTTCCCCACCG--CTC--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74936244 92 + 122973662 TTGCCAGGTTTTGTTTGACTGGCATGATGATTTAGAAAATAATGATAATGCAGATGCCTTTAGA--GAGGGTGGCTA-----TGTTCCCCACCACTCTC--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815766 94 + 172585720 TTGACAGGTTTCGTTTGACTGGCATGATGATTTAGAAAATAATAATAATGTAGATGCCTTTAGAGAGAGGGAGGCTA-----TGTTCCCCACCACTCTC--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30105254 94 - 170955103 TTGACAGGTTTCGTTTGACTGGCATGATGATTTAGAAAATAATAATAATGTAGATGCCTTTAGAGAGAGGGAGGCTA-----TGTTCCCCACCACTCTC--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     354107 94 +   1495729 TTGACAGGTTTCGTTTGACTGGCATGATGATTTAGAAAATAATAATAATGTAGATGCCTTTAGAGAGAGGGAGGCTA-----TGTTCCCCACCACTCTC--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     453953 94 -    863181 TTGACAGGTTTTGTTTGACTGGCATGATGATTTAGAAAATAATAATAATGTAGATGCCTTTGGAGAGAGGGTGGCTA-----TGTTCCCCACCACTCTC--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29604210 94 -  71996105 TTGACAGGTTTTGTTTGACTGGCATGATGATTTAGAAAATAATAATAATGTAGATGCCTTTAGAGAGAGGGTGGCTA-----TGTTCCCCACCACTCTC--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     302995 94 -    735854 TTGACAGGTTTTGTTTGACTGGCATGATGATTTAGAAAATAATGATAATGTAGATGCCTTTAGAGAGAGGGTGGCTA-----TGTTCCCCACCACTCTC--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     242569 94 -   1829203 TTGACAGGTTTTGTTTGACTGGCATGATGATTTAGAAAATAATGATAATGTAGATGCCTTTAGAGTGAGGGTGGCTA-----TGTTCCCCACCACTCTC--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435613 95 + 171630274 TTGACAGGTCCTGTTTGACTGGCATGACGATTTAGAAAATAATGATAACGTAGATGCCTTTAGA--GCGGGTGGCTATGATGTGTTCTCCACCA--CTC--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           247258 90 +    515838 TTGACAGGTCTTGTTTGACTGGCATGGTGATTTAGAAAATAATGATAATGTAGATGCCTTTAGA--GAGGGTGGCTA-----TGTTCTCCACCA--CTC--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873537 90 -   1771730 TTGACAGGTCTTGTTTGACTGGCGTGATGATTTAGAAAACAATGGTAATGTAAATGCCTTTAGG--GAGGGTGGCTA-----TGTTTTTCACCA--CTC--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     371574 95 -    383796 TTGACAGGTCTTGTTTGACTGGCATGATGATTTAGAAAATAATGCTAATGTAGATGCCTTTAGA--GAGGGTGGCTATGTTATGTTCTCTACCA--CTC--
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               332898 90 + 123392446 TTAATGGGTTTTATTTGACTGACATAATGATTTTTAAAATAATGATTATTTGGATGTCTTTAGA--GAGGGTGGCTA-----TTTTTTCCACCA--CTC--
i micMur3.chr6             C 0 I 16
s proCoq1.NW_012149775v1     138208 90 -   1411461 TTGACAGGTTTTGTTTGACTGACATAATGATTTCAAAAATAATGATTATTTGGATGTCTTTAGA--GAGGGTGGCTA-----TTTTTTCCACCA--CTC--
i proCoq1.NW_012149775v1   C 0 I 22
s otoGar3.GL873550           291307 90 +  18854210 TTGACAGATTTTGTTTGACTGGCATGATGATTTAAAAAATAACGATAATTTGAATTCCTTTAGA--GAGGGTAGCTA-----TCTTCTCCACTG--CTT--
i otoGar3.GL873550         C 0 I 2
s canFam3.chr35            26323692 86 +  26524999 TTAGATGGTTTTGCTTGACTGCCATGGTGATTTTAAAAATACTAGTCATGCACATGCCTTTCAG--GAGGGTGGC-------TTGCCCCCAGGA--C----
i canFam3.chr35            C 0 C 0
s dasNov3.JH580105            35221 82 -     45298 CTGGCGGGCTTGGTCAGACTGGCACGGGGTCTT--AAAATGACGGTAGC-TGGACGCCTGCAGA-----GGAGGCAA-----AGCTC----CCA--CTCCC
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58090360 2309 -  94987271 I

a score=164987.000000
s hg38.chr6_GL000254v2_alt  1458428 15 +   4827813 TGCTACCTCACGTCT
s panTro5.chr6             30327879 15 + 175400573 TGCTACCTCACGTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562242 15 + 173848474 TGCTACCTCACGTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269301 15 +   2037526 TGCTACCTCACATCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74936336 15 + 122973662 TGCTACCTCACATCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815860 15 + 172585720 TGCTATCTCACATCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30105348 15 - 170955103 TGCTATCTCACATCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     354201 15 +   1495729 TGCTATCTCACATCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     454047 15 -    863181 TGCTATCTCACGTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29604304 15 -  71996105 TGCTGTCTCATGTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     303089 15 -    735854 TGCTATCTCACGTCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     242663 15 -   1829203 TGCTATCTCACATCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435708 15 + 171630274 CGCTACCTCAGGTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           247348 15 +    515838 TGCTACCTCACATCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873627 15 -   1771730 TGCTACCTCACGTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     371669 15 -    383796 TGCTACCTCATGTCT
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           291399 15 +  18854210 TATTAACTTATGTCT
i otoGar3.GL873550         I 2 C 0
s canFam3.chr35            26323778 15 +  26524999 TCCTTCCTCTCGTCT
i canFam3.chr35            C 0 I 1
s dasNov3.JH580105            35303 15 -     45298 CACTGCCTGTGGTGC
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               332988 16 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     138298 22 -   1411461 I

a score=17102.000000
s hg38.chr6_GL000254v2_alt  1458443 6 +   4827813 CCTTGG
s panTro5.chr6             30327894 6 + 175400573 CCTTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562257 6 + 173848474 CCTTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269316 6 +   2037526 CCTTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74936351 6 + 122973662 CCTCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815875 6 + 172585720 CCTGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30105363 6 - 170955103 CCTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     354216 6 +   1495729 CCTGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     454062 6 -    863181 CCTCGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29604319 6 -  71996105 TCTTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     303104 6 -    735854 CCTCGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     242678 6 -   1829203 CCTTGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435723 6 + 171630274 TTTTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           247363 6 +    515838 TTTTGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873642 6 -   1771730 TTTTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     371684 6 -    383796 TTTTGG
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               333004 5 + 123392446 CCTCT-
i micMur3.chr6             I 16 I 1
s otoGar3.GL873550           291414 2 +  18854210 ---CT-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26323794 5 +  26524999 TCTGG-
i canFam3.chr35            I 1 C 0
s dasNov3.JH580105            35318 4 -     45298 -CTGG-
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     138298 22 -   1411461 I

a score=244953.000000
s hg38.chr6_GL000254v2_alt  1458449 18 +   4827813 CCCTTGAAGG-C-ATTTGAC
s panTro5.chr6             30327900 18 + 175400573 CCCTTGAAGG-C-ATTTGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562263 18 + 173848474 CCCTTGAAGG-C-GTTTGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269322 18 +   2037526 CCCTTGAAGG-C-ATTTGAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74936357 18 + 122973662 CCCTTGAAGG-C-ATGTGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30815881 18 + 172585720 CCCTTGAAGG-C-ATTTGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30105369 18 - 170955103 CCCTTGAAGG-C-ATTTGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     354222 18 +   1495729 CCCTTGAAGG-C-ATTTGAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     454068 18 -    863181 CCCTTGAAGG-C-ATTTGAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29604325 18 -  71996105 CCCTTGAAGG-T-ATTTGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     303110 18 -    735854 CCCTTGAAGG-C-ATTTGAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     242684 18 -   1829203 CCCTTGAAGG-C-ATTTGAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435729 19 + 171630274 CCCTTGAAGG-CAATTTGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           247369 19 +    515838 TCCTTGAAGG-AAATTTGCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873648 18 -   1771730 -CCTTGAAGA-CAATTTGAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     371690 19 -    383796 CCCTTGAAGG-CAATTTGAC
i aotNan1.NW_018496904v1   C 0 C 0
s micMur3.chr6               333010 18 + 123392446 CCCCTGAAAG-C-ATTTGTC
i micMur3.chr6             I 1 C 0
s proCoq1.NW_012149775v1     138320 18 -   1411461 CCCATGAAGG-C-ATTTGAC
i proCoq1.NW_012149775v1   I 22 C 0
s otoGar3.GL873550           291416 18 +  18854210 -CCATGCAGGAC-ATTTGAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26323799 18 +  26524999 CCCCTGAGGA-C-ATCGGAC
i canFam3.chr35            C 0 I 1751
s dasNov3.JH580105            35322 17 -     45298 -CCCCGAGGG-C-CTCTGAT
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58090360 2309 -  94987271 I

a score=1261788.000000
s hg38.chr6_GL000254v2_alt  1458467 87 +   4827813 ATTATGACTCTGATTTATAGATTTATTTTGCTTATATTACCTCATTTAAGTCTCACCTGTAAG---AAATTATCTTTATCCTTTCTCAAA-
s panTro5.chr6             30327918 87 + 175400573 ATTATGACTCTGATTTATAGATTTATTTTGCTTATATTACCTCATTTAAGTCTCACCTGTAAG---AAATTATCTTTATCCTTTCTCAAA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562281 87 + 173848474 ATTATGACTCTGATTTATAGATTTATTTTGCTTATATTACCTCATTTAAGTCTCACCTGTAAG---AAATTATCTTTATCCTTTCTCAAA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269340 87 +   2037526 ATTATGACTCTGATTTATAGATTTATTTTGCTTATATTACCTCATTTAAGTCTCACCTGTAAG---AAATTATCTTTATCCTTTCTCAAA-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74936375 87 + 122973662 ATTATAACCCTGATTTATAAATTTATTTTGTTTATATTACCTCATTTAAATCTCACCTGTAAG---AAATTATCTTTATCCTttctcaaa-
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             30815899 87 + 172585720 ATTATGACCCTGATTTATAGATTTATTTTGCTTATATTACCTCATTTAAGTCTCACCTGTGAG---AAATTATCTTTATCCTTTCTCAAA-
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             30105387 87 - 170955103 ATTATGACCCTGATTTATAGATTTATTTTGCTTATATTACCTCATTGAAGTCTCACCTGTGAG---AAATTATCTTTATCCTTTCTCAAA-
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     354240 87 +   1495729 ATTATGACCCTGATTTATAGATTTATTTTGCTTATATTACCTCATTGAAGTCTCACCTGTGAG---AAATTATCTTTATCCTTTCTCAAA-
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     454086 87 -    863181 ATTATGACCCTGATTTATAGATTTATTTTGCTCATATTACCTCATTTAAGTCTCACCTGTGAG---AAATTATCTTTATCCTTTCTCAAA-
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29604343 87 -  71996105 ATTATGACCCTGATTTATAGATTTATTTTGCTTATATTACTTCATTTAAGTCTCACCTGTGAG---AAATTATCTTTATCCTTTCTCAAA-
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1     303128 87 -    735854 ATTATGACCCTGATTTATAGATTTATTTTGCTTATATTACCTCATTTAAGTCTCACCTGTGAG---AAATTATCTTTATCCTTTCTCAAA-
i manLeu1.NW_012107142v1   C 0 M 630
s colAng1.NW_012115577v1     242702 87 -   1829203 ATTATGACCCTGATTTATAGATTTATTTTGCTTATATTACCTCATTTAAGTCTCACCTGTAAG---AAATTATCTTTATCCTTTCTGAAA-
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30435748 87 + 171630274 ATTATGACCCTGATTTATAGATTTATTTTGCTTATATTACCTCATTTAAGTCTCACCGGTGAG---AAATTATTTGTATCCAttctcaaa-
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           247388 87 +    515838 ATTATGACCTTGATTTATAGATTTATTTTGCTTATATTACCTTATTTAAGTCTCACCTGTAAG---AAATTATCTTTATCCATTCTCAAA-
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     873666 87 -   1771730 ATTATGACCCTGATTTATAGATTTATTTTGCTTATATTACCTCATTTAAGTCTTAACTGTAAG---AAATTATCTTTATCCAttctcaaa-
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496904v1     371709 87 -    383796 GTTATGACCCTGATTTATAGATTTATTTTGCTTATATTACCTCATTTAAGTCTCATGTGTAAG---AAATTATCTGTATCCAttctcaaa-
i aotNan1.NW_018496904v1   C 0 I 1
s micMur3.chr6               333028 87 + 123392446 CTTATGACCCTGAGTTACAAATTTATTTTGTTTATATTACTTCATTTAAGTTTCACCTGCAAG---AAATTATCTTTATCCATCCTCAAA-
i micMur3.chr6             C 0 I 1
s proCoq1.NW_012149775v1     138338 87 -   1411461 CTTATGACCCTGAGTTGCAAATTTCTTTTGCTTATATTTCTTCGTTTAAGTTTCACCTGTAAG---AAATTATCTTTATCCATTCTCAAA-
i proCoq1.NW_012149775v1   C 0 I 1
s otoGar3.GL873550           291434 87 +  18854210 CTTGTGACCCTGATATACAGATTTCTTTTGTTTATATTACTTCATTTAAGTTTCACCTACAAG---AAATTATGTTTATCCATTCCCAAA-
i otoGar3.GL873550         C 0 I 1
s dasNov3.JH580105            35339 85 -     45298 CTCATGACCCTGCTTTGCCATTTTCTCTcac--acgttatctcatttaattctcacctgtgagaataaatcatc----tccattcacgaag
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58090360 2309 -  94987271 I
e canFam3.chr35            26323817 1751 +  26524999 I

a score=1150699.000000
s hg38.chr6_GL000254v2_alt  1458554 105 +   4827813 AAAGGAACTCAGTATTCTtcagaatcacttggaaaacttgttaaaa-----------ttcagatttgctgaactc-----------------------------------------cagtagagactttctctttcaacaggtccttggtggagcct
s panTro5.chr6             30328005 105 + 175400573 AAAGGAACTCAGTATTCTtcagaatcacttggaaaacttgttaaaa-----------ttcagatttgctgaactc-----------------------------------------cagtagagactttctctttcaacaggtccttggtggagtct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562368 105 + 173848474 AAAGGAACTCAGTATTCTtcagaatcacttggaaaacttgttaaaa-----------ttcagatttgctgaactc-----------------------------------------cagtagagactttctctttcaacaggtccttggtggagtct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269427 100 +   2037526 AAAGGaacttagtattcttcagaatcacttggaaaacttgttaaaa-----------ttc----ttgctgagct------------------------------------------cagtagagactttctctttcaacaggtccttggtggagtct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74936463 103 + 122973662 aaagcaactcagtattcttcagaatcacttggaaaacttgttaaaa-----------ttcagatttgctgaactc-----------------------------------------cagcagagactt--tgtttcaacaggtccttggtggagcct
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30815987 105 + 172585720 AAAGCAACTCGgtgttcttcagaatcacttggaaaagttgttaaaa-----------ttcagagttgctgaactc-----------------------------------------cagcagagactttctgtttcaacaggtccttggtggagcct
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30105475 105 - 170955103 AAAGCAACTCGgtgttcttcagaatcacttggaaaagttgttaaaa-----------ttcagagttgctgaactc-----------------------------------------cagcagagactttctgtttcaacaggtccttggtggagcct
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     354328 105 +   1495729 AAAGCAACTCGgtgttcttcagaatcacttggaaaagttgttaaaa-----------ttcagagttgctgaactc-----------------------------------------cagcagagactttctgtttcaacaggtccttggtggagcct
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     454174 105 -    863181 AAAGCAACTCGgtgttcttcagaatcacttggaaaaattgttaaaa-----------ttcagatttgctgaactc-----------------------------------------cagcagagacttcttgtttcaacaggtccttggtggagcct
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29604431 105 -  71996105 AAAGCAACTCGgtgttcttcagaatcacttggaaaagttgttaaaa-----------ttcagagttgctgaactc-----------------------------------------cagcagagactttctgtttcaacaggtccttggtggagcct
i chlSab2.chr17            I 1 C 0
s colAng1.NW_012115577v1     242790 105 -   1829203 AAAGCCATTCCGTATTCTtcagaatcacttggaaaagttgttaaaa-----------ttcagatttgctgaactc-----------------------------------------cagcagagactttctgtttcaacaggtccttggtggagcct
i colAng1.NW_012115577v1   I 1 C 0
s calJac3.chr4             30435836 104 + 171630274 aaagcaattcagtattcttcagaatcacttggaaaac-tgttaaaa-----------ttcagatttgtggaactc-----------------------------------------cagcaaagactttctgttttaacaggtccttggtggggcct
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           247476 104 +    515838 AGAGCAAATCAGTATTCTtcagaatcacttggaaaac-ttttaaaa-----------ttcagatttgtggaactc-----------------------------------------cagcaaagactttctgtttcaacagatccttggtggggcct
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     873754 104 -   1771730 aaagcaactcagtattcttcagaatcacttggaaaac-ttttaaaa-----------ttcagatttgtggaactc-----------------------------------------cagcacaggctttctgtttcaacaggtccttggtggggcct
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496904v1     371797 104 -    383796 aaagcaactcagtattcttcagaatcacttggaaaac-tgttaaaa-----------ttcagatttgcggaactc-----------------------------------------cagcaaagactttctgtttcaacagttccttggtggggccT
i aotNan1.NW_018496904v1   I 1 M 5010
s micMur3.chr6               333116 105 + 123392446 AAGGAAACAGagtatgcttcagaatcccttggaaaacctgttaaaa-----------cacagatttgctgatccc-----------------------------------------cagcagagactttctgtttcagtaggtctagggtggggcct
i micMur3.chr6             I 1 C 0
s proCoq1.NW_012149775v1     138426 105 -   1411461 AAGGAAACAGAACATCTTtcagaatcccttggaaaacttgttaaaa-----------cactaatttgctgagccc-----------------------------------------cagcagagactttctgtttcagtaggttgagggtggggcct
i proCoq1.NW_012149775v1   I 1 C 0
s otoGar3.GL873550           291522 104 +  18854210 AAGGAAATGGAATAtgcttcagaatcccttggaaaacttgtt-aaa-----------cacagataggctgagccc-----------------------------------------caacagagactttctgtttctataggtccaaggtggggctt
i otoGar3.GL873550         I 1 C 0
s dasNov3.JH580105            35424 154 -     45298 gagaaaactgagtatccttcagaatcacccagggagcttgttaaaGACGCTGCTGACTCTGGATGAATTGAACGCTTTATTAATATGTATCTATAATTGATGTTAAAAAAAACAGGTTGCTGAGGCTCT-TGTTGCTATGTGTCCATG--GGGGCCC
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58090360 2309 -  94987271 I
e canFam3.chr35            26323817 1751 +  26524999 I
e manLeu1.NW_012107142v1     303215 630 -    735854 M

a score=216418.000000
s hg38.chr6_GL000254v2_alt  1458659 19 +   4827813 gatgattgacatcttaagc
s panTro5.chr6             30328110 19 + 175400573 gatgattgacatcttaagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562473 19 + 173848474 gatgattgacatcttaagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269527 19 +   2037526 gatgattgacatcttaagc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74936566 19 + 122973662 gatgattgacatcttaagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30816092 19 + 172585720 gatgattgacatcttaagc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30105580 19 - 170955103 gatgattgacatcttaagc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     354433 19 +   1495729 gatgattgacatcttaagc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     454279 19 -    863181 gatgattgacatcttaagc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29604536 19 -  71996105 gatgattgacatcttaagc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     242895 19 -   1829203 gatgattgacatcttaagc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435940 19 + 171630274 gatgattgacattttaggc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           247580 19 +    515838 gatgattgacatcttaagc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873858 19 -   1771730 gatgattgacatctgaagc
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               333221 19 + 123392446 gataatttacatcttaaac
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     138531 19 -   1411461 gataatttacatcttaaac
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           291626 19 +  18854210 gataatttatattgtaaac
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            35578 19 -     45298 AATGAATTACTGTTTAAAT
i dasNov3.JH580105         C 0 I 62
e mm10.chr17               58090360 2309 -  94987271 I
e canFam3.chr35            26323817 1751 +  26524999 I
e aotNan1.NW_018496904v1     371901 5010 -    383796 M
e manLeu1.NW_012107142v1     303215 630 -    735854 M

a score=118973.000000
s hg38.chr6_GL000254v2_alt  1458678 11 +   4827813 aaattctctgg
s panTro5.chr6             30328129 11 + 175400573 aaattctccgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562492 11 + 173848474 aaattctccgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269546 11 +   2037526 aaattctctgg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74936585 11 + 122973662 aaattctctgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30816111 11 + 172585720 aaattctctgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30105599 11 - 170955103 aaattctctgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     354452 11 +   1495729 aaattctctgg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     454298 11 -    863181 aaattctctgg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29604555 11 -  71996105 caattctctgg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     242914 11 -   1829203 aaattctctgg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435959 11 + 171630274 aaattccctag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           247599 11 +    515838 aaattccctgg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873877 11 -   1771730 aaattccctgg
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               333240 11 + 123392446 aaattctctgg
i micMur3.chr6             C 0 I 21
s proCoq1.NW_012149775v1     138550 11 -   1411461 aaattctcccg
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           291645 11 +  18854210 aaattctcagg
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH580105            35597 62 -     45298 I
e canFam3.chr35            26323817 1751 +  26524999 I
e aotNan1.NW_018496904v1     371901 5010 -    383796 M
e manLeu1.NW_012107142v1     303215 630 -    735854 M

a score=179678.000000
s hg38.chr6_GL000254v2_alt  1458689 23 +   4827813 agaagtcgatgctcc-tgatggag
s panTro5.chr6             30328140 23 + 175400573 agaagtcgatgctcc-tgatggag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562503 23 + 173848474 agaagtcgatgctcc-tgatggag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269557 23 +   2037526 agaagtcgatgctcc-tgatggag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74936596 23 + 122973662 agatgtcgatgctcc-tgatggag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30816122 23 + 172585720 agatgctgatgctcc-tgatgggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30105610 23 - 170955103 agatgctgatgctcc-tgatgggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     354463 23 +   1495729 agatgctgatgctcc-tgatgggg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     454309 23 -    863181 agatgctgatgctcc-tgatgggg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29604566 23 -  71996105 agatgctgatgctcc-tgatgggg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     242925 23 -   1829203 agatgttgatgctcc-tgatgggg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435970 23 + 171630274 agatgttgatgctgc-tgatagag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           247610 23 +    515838 agatgttgatgctgc-tgatagag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873888 23 -   1771730 agatggtgatgctgc-tgatagag
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     138561 22 -   1411461 -gatgccagtgctgc-tgaaggta
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           291656 23 +  18854210 -gatgccagtgctgcttgaaggta
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333251 21 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH580105            35597 62 -     45298 I
e canFam3.chr35            26323817 1751 +  26524999 I
e aotNan1.NW_018496904v1     371901 5010 -    383796 M
e manLeu1.NW_012107142v1     303215 630 -    735854 M

a score=183628.000000
s hg38.chr6_GL000254v2_alt  1458712 16 +   4827813 gctcacacattgataa
s panTro5.chr6             30328163 16 + 175400573 gctcacacattgataa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562526 16 + 173848474 gctcacacattgataa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269580 16 +   2037526 gctcacacattgataa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74936619 16 + 122973662 gctcacacattgataa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30816145 16 + 172585720 gctcacacattgataa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30105633 16 - 170955103 gctcacacattgataa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     354486 16 +   1495729 gctcacacattgataa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     454332 16 -    863181 gctcacacattgataa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29604589 16 -  71996105 gctcacacattgataa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     242948 16 -   1829203 gctcacacattgataa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30435993 16 + 171630274 gcccacacgttgataa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           247633 16 +    515838 gcccacacattgataa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873911 16 -   1771730 gcccacacattgataa
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               333272 16 + 123392446 gcccacacattgagaa
i micMur3.chr6             I 21 C 0
s proCoq1.NW_012149775v1     138583 16 -   1411461 gcccacacattgagaa
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           291679 16 +  18854210 gcccacacatggagaa
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH580105            35597 62 -     45298 I
e canFam3.chr35            26323817 1751 +  26524999 I
e aotNan1.NW_018496904v1     371901 5010 -    383796 M
e manLeu1.NW_012107142v1     303215 630 -    735854 M

a score=985392.000000
s hg38.chr6_GL000254v2_alt  1458728 93 +   4827813 cccctgGTTTAGAGACACTACTAAttgttccagctcatccagctaataaatgacagatctcagacttaattccaggtttcctattccacatta
s panTro5.chr6             30328179 93 + 175400573 cccctggtttagagacactactaattgttccagctcatccagctaataaatgacagatctcagacttaattccaggtttcctattccacatta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562542 93 + 173848474 cccctgGTTTAGAGACACTACTAAttgttccagctcatccagctaataaatgacagatctcagacttaattccaggtttcctattccacatta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269596 93 +   2037526 cccctggtttagagacactactaattgttccagctcatccagctaataagtgacagatctcagacttaattccaggtttcctattccacatta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74936635 93 + 122973662 cccctggtttagagacactactaattgttccagctcatccagctaataaacgacagatctcagacttaattccaggtttcctattccacatta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30816161 93 + 172585720 cccctggtttagagacactactaattgttccagctcatccagctaataattgacagatctcagacttaattccaggtttcctattccatatta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30105649 93 - 170955103 cccctggtttagagacactactaattgttccagctcatccagctaataattgacagatctcagacttaattccaggtttcctattccatatta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     354502 93 +   1495729 ccgctgGTTTAGAGACACTACTAAttgttccagctcatccagctaataattgacagatctcagacttaattccaggtttcctattccatatta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     454348 93 -    863181 cccctggtttagagacactactacttgttccagctcatccagctaataattgacagatctcagacttaattccaggtttcctattccacatta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29604605 92 -  71996105 cccctggtttagagacactactaattgttccagctcatccagctaataattgacagatctcagacttaattccaggtttcctattccacatt-
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     242964 93 -   1829203 cccctgGTTTAGAGACACTACTAAttgttccagctcatccagctaataactgacagatctcagacttaattccagatttcctattccacatta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30436009 93 + 171630274 cccctggtttagagacactagtaattgttccagctcatccagctaataaatgacagatctcagacttagttccaggtttcctagtccaTATTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           247649 84 +    515838 cccctgGTTTGGAGACGCTACTAATTGT---------TCcagctaataagtgacagatctcagacctaattccaggtttcctagcccATATTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     873927 84 -   1771730 cccctgGTTTAGAGACGCTACTAATTGT---------TCcagctaataaatgacagctctcagacttaattccaggtttcctagtccaTATTA
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               333288 93 + 123392446 ccactgGTTTGGAGACACCACAAAGtgcaccagctcatccagctcataaatgacagagctgagattcagtcccaggttttccattccatatta
i micMur3.chr6             C 0 I 103
s proCoq1.NW_012149775v1     138599 93 -   1411461 tcactgGTTTGGAGACACCACAAAGtgttccagctcatccagctcataaatgacacagctgagattcaatcccaggttttccattccatatta
i proCoq1.NW_012149775v1   C 0 I 33
s otoGar3.GL873550           291695 93 +  18854210 caactgATATAGAGACATCACAAAGtgttccagttcatccagctcataaatgccagagctgagattcaatcccaggttttctattctatatta
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            35659 87 -     45298 ctgccagactggaggtaccgcaggttgCCCCAGCGCATCCAGCTATCAGTCCACAG-CCCCAGGCC----ACCAGCTCTCC-ACTCCCCCTTA
i dasNov3.JH580105         I 62 C 0
e mm10.chr17               58090360 2309 -  94987271 I
e canFam3.chr35            26323817 1751 +  26524999 I
e aotNan1.NW_018496904v1     371901 5010 -    383796 M
e manLeu1.NW_012107142v1     303215 630 -    735854 M

a score=285391.000000
s hg38.chr6_GL000254v2_alt  1458821 35 +   4827813 agtcttctttATTCTTTCTTGTTTCAGCATTAATG
s panTro5.chr6             30328272 35 + 175400573 agtcttctttATTCTTTCTTGTTTCAGCATTAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562635 35 + 173848474 agtcttctttATTCTTTCTTGTTTCAGCATTAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269689 35 +   2037526 agtcttctttATTCTTTCTTGTTTCAGCATTAATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74936728 35 + 122973662 agtcttctttATTCTTTCTTGTTTCAGCATTAATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30816254 35 + 172585720 agtcttctttATTCTTTCTTGTTTCAGCATTAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30105742 35 - 170955103 agtcttctttATTCTTTCTTGTTTCAGCATTAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     354595 35 +   1495729 agtcttctttATTCTTTCTTGTTTCAGCATTAATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     454441 35 -    863181 agtcttctttATTCTTTCTTGTTTCAGCATTAATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29604697 34 -  71996105 -gtcttctttATTCTTTCTTGTTTCAGCATTAACA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     243057 35 -   1829203 agtcttctttATTCTTTCTTGTTTCAGCATTAACG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30436102 35 + 171630274 CATCTCCTTTATTCTTCCTTGTTTCAGCATTAACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           247733 35 +    515838 CATCTTCTTTATTCTTTCTTGTTTCAGCATTAACA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     874011 35 -   1771730 CATCTTCTTCATTCTTTCTTGTTTCAGCATTAACA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           291788 31 +  18854210 agtgcttgctcttctTTCCTATTTTAGCATT----
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            35746 28 -     45298 GATGCTCTTTCTTCTGCA------CAGCATTAAC-
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               333381 103 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     138692 33 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I
e aotNan1.NW_018496904v1     371901 5010 -    383796 M
e manLeu1.NW_012107142v1     303215 630 -    735854 M

a score=336515.000000
s hg38.chr6_GL000254v2_alt  1458856 37 +   4827813 AAAACAAATAGTAATCTTTAAAAATGAT-AAACAAATA
s panTro5.chr6             30328307 37 + 175400573 AAAACAAATAGTAATCTTTAAAAATGAT-AAACAAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562670 37 + 173848474 AAAACAAATAGTAATCTTTAAAAATGAT-AAACAAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269724 37 +   2037526 AAAACAAATAGTAATCTTTAAAAATGAT-AAACAAATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74936763 37 + 122973662 AAAACAAATAGTAATCTTTAAAAATGAT-AAACAAATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30816289 37 + 172585720 AAAACAAATAGCAATCTTTAAAAATAAT-AAACAAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30105777 37 - 170955103 AAAACAAATAGCAATCTTTAAAAATGAT-AAACAAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     354630 37 +   1495729 AAAACAAATAGCAATCTTTAAAAATGAT-AAACAAATA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     454476 38 -    863181 AAAACAAATAGTAATCTTTAAAAATGATAAAAAAAATA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29604731 37 -  71996105 AAAACAAATAGCAATCTTTAAAAATGAT-AAACAAATA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     243092 37 -   1829203 AAAACAAATAGTAATCTTTCAAAATGAT-AAACAAATA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30436137 37 + 171630274 AAAACAAATGGTAATCTTTAAAAATGAT-AAACAAATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           247768 37 +    515838 AAAACAAATAGTAATCTTTAAAAATGAT-AAGCAAATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     874046 37 -   1771730 AAAACAAAGAGTAATCTTTAAAAATGAT-AAACAAATA
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     138725 36 -   1411461 AAAACAAACAGTAATCTTC-AAAATGAT-AAGCAAATC
i proCoq1.NW_012149775v1   I 33 I 37
s otoGar3.GL873550           291819 34 +  18854210 --AACAAATAGTAACCTTC-AAAATGAT-AAGCAAATT
i otoGar3.GL873550         C 0 I 31
s dasNov3.JH580105            35774 15 -     45298 ---------CGTAATCTCCAAAGA--------------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               333381 103 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e canFam3.chr35            26323817 1751 +  26524999 I
e aotNan1.NW_018496904v1     371901 5010 -    383796 M
e manLeu1.NW_012107142v1     303215 630 -    735854 M

a score=2140451.000000
s hg38.chr6_GL000254v2_alt  1458893 203 +   4827813 TTTTAAAAGAACATTGGTATTTCAATGAAGCTGGGCAACCCAGCAGAGAGAATGAAAATACTC---ATATGAACACCACTGGAGAGTTTCAAAGAACTGTCACCAAACAGGTACTGATGGCTTCATGAGGAAGGAAATTTAGACATAAAAAATGAGAATCTACAGTGTTTCAAA-GGTGCTTTACTCTCTCAGAATTATTATTGTTA
s panTro5.chr6             30328344 203 + 175400573 TTTTAAAAGAACATTGGTATTTCAATGAAGCTGGGCAACCCAGCAGAGAGAATGAAAATACTC---ATATGAACACCAGTGGAGAGTTTCAAACAACTGTCACCAAACAGGTACTGATGGCTTCATGAGGAAGGAAATTTAGACATAAAAAATGAGAATCTACAGTGTTTCAAA-GGTGCTTTACTCTCTCAGAATTATTATTGTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562707 203 + 173848474 TTTTAAAAGAACATTGGTATTTCAATGAAGCTGGGCAACCCAGCAGAGAGAATGAAAATACTC---ATATGAACACCAGTGGAGAGTTTCAAACAACTGTCACCAAACAGGTACTGATGGCTTCATGAGGAAGGAAATTTAGACATAAAAAATGAGAATCTACAGTGTTTCAAA-GGTGCTTTACTCTCTCAGAATTATTATTGTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269761 201 +   2037526 TTTTAAAAGAAC--CAATATTTCAATGAAGCTGGGCAACCCAGCAGAGAGAATGAAAATACTC---ATATGAACACCACTGGAGAGTTTCAAACAACTGTCACCAAACAGGTACTGATGGCTTCATGAGGAAGGAAATTTAGACATAAAAAATGAGAATCTACAGTGTTTCAAA-GGTGCTTTACTCTCTCAGAATTATTATTGTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74936800 203 + 122973662 TTTTAAAAGAACATTGGTATTTCAATGAAGCTGGGCAAGCCAGCAGAGAGAATGAAAATACTC---ATATGAACACCACTGGAGAGTTTCAAACAACTATCACCAAACAGGTACTGATGGCTTCATGAGGAAGGAAATTTAGACATAAAAAAGGAGAATCTATAGTGCTTCAAA-GGTGCTTTACTCTCTCAGAATTATTATTGTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30816326 203 + 172585720 TTTTAATAGAACATTGGTATTTCAATGAAGCTGGGCAAGCCAGCAGAGAGAATGAAAATACTC---GTATGAACACCACTGGAGAGTTTCAAACAACTATCACCAAACAGGTACTGATGGCTTCATGAGGAAAGAAATTTAGACATAAAAAGGGAGAATCTATAGTGTTTCAAA-GGTGCTTTACTGTCTCAGAATTATTATTGTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30105814 203 - 170955103 TTTTAATAGAACATTGGAATTTCAATGAAGCTGGGCAAGCCAGCAGAGAGAATGAAAATACTC---ATATGAACACCACTGGAGAGTTTCAAACAACTATCACCAAACAGGTACTGATGGCTTCATGAGGAAAGAAATTTAGACATAAAAAGGGGGAATCTATAGTGTTTCAAA-GCTGCTTTACTGTCTCAGAATTATTATTGTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     354667 203 +   1495729 TTTTAATAGAACATTGGTATTTCAATGAAGCTGGGCAAGCCAGCAGAGAGAATGAAAATACTC---ATATGAACACCACTGGAGAGTTTCAAACAACTATCACCAAACAGGTACTGATGGCTTCATGAGGAAAGAAATTTAGACATAAAAAGGGAGAATCTATAGTGTTTCAAA-GGTGCTTTACTGTCTCAGAATTATTATTGTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     454514 203 -    863181 TTTTCATAGAATATTGATATTTCAATGAAGCTGGGCAAGCCAGCAGAGAGAATGAAAATACTC---ATATGAACACCACTGGAGAGTTTCAAACAACTATCACCAAACAGGTACTGATGGTTTCATGAGGAAAGAAATTTAGACATAAAAAAGGAGAATCTAGAGTGTTTCAAA-GGTGCTTTACTGTCTCAGAATTATTATTGTTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29604768 203 -  71996105 TTTTAATAGAACATTGGTATTTCAATGAAGCTGGGCAAGCCAGCAGAGAGAATGAAAATACTC---ATATGAACACCACTGGAGAGTTTCAAACAGCTATCACCAAACAGGTACTGATGGCTTCATGAGGAAAGAAATTTAGACATAAAAAAGGAGAATCTATAGTGTTTCAAA-GGTGCTTTACTGTCTCAGAATTATTATTGTTA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     243129 203 -   1829203 TTTTAATAGAACATTGGTATTTCAATGAAGCTGGGCAGGCTAGCAGAGAGAATGAAAATACTC---ATATGAACACCACTGGAGAGTTTCAAACAACTATCACCAAACAGGTACTGATGGCTTCATGAAGAAAGAAATTTAGACATAAAAAAGGAGAATATTTAGTGTTTCAAA-GGTGCTTTACTGTCTCAGAATTATTATTGTTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30436174 199 + 171630274 TTTTAAAAGAATATTAGTATTTCAATGAAGTTGGGCAAGCCAGCAGAAGGAATGAAAATACAC---CTATGAACACCACTGGAGAGTTTCAAACAACTATCACCAAACAGGTACCAATGATTTCATGAGAAAGAAAATTTAGAAATAAA---GGAGAATCTATAGTGTTTCAAA-GGTGCTTTACTCTCTCA-AATTATTATTGTTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           247805 199 +    515838 CTTTAAAAGAACATCAGTATTTCAATGAAGTTGGGCAAGCCAGAAGAAGAAATGAAAATATTC---ATATGAACACCACTGGAGAGTTTCAAACAACTATCACCAAACAGGTACCAATGGCTTCATGAGGAAGGAAATTTAGAAATAAA---GAAGAATATATAGTGTTTCAAA-GGTGCTTTACTCTCTCA-AATTATTATTGTTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     874083 199 -   1771730 TTTTAAAAGATCATTAGTATTTCAATGAAGTTGGGCAAGCCAGCAGAAGGAATGAAAATACTC---ATATGAACACCATTGGAGAATTTCAAACAACTATCACCAAACAGGTACCGATGGCTTCATGAGGAAGGAAATTTAGAAATAAA---GGAGAATCTATAGTGTTTCAAA-GGTGCTTTACTCTCTCA-Aattattattatta
i cebCap1.NW_016107755v1   C 0 I 323
s micMur3.chr6               333484 203 + 123392446 TTTTAAACGAACATTGATATTTCAACGAGGCTGGGCAAGCCAGCAGAAAGGACGAGAATACTT---ACGCGGACACCACTGGAGAGCTCCAAACAACTATCACTGAACAGGTACTGGCGGCTTCACGTGGGGGGAGATTTAGACATAAAATAGGAGAAAGTACGGTATTGCAAA-GGTGTTTTACTCTCCTAGAATTATTATTGTTA
i micMur3.chr6             I 103 I 1
s proCoq1.NW_012149775v1     138798 203 -   1411461 TTTTAAATGAACATTGATATTTCAACGAGGCTGGGCAAGCCAGCAGAAAGGATGAGCATGCTC---ATGTGAAAACCACGGGAGAGCTCCAAACAACTGTCACCAAACAGGTACCGACAGCTTCATGTGGGGGGAAATTTAGATGTAAAAAAGGAGAATGTGTAGTGTTCCAAA-GGTGTTTTACTCTCCTAGAATTATTATTGTTA
i proCoq1.NW_012149775v1   I 37 I 1
s otoGar3.GL873550           291884 196 +  18854210 TTTTAAAATAACATTGATATTTCAATAAGTTTGGGCAAGCCAGGACAAA-GATGAGAATACTC---ATATGAACACCACTGGAGGGTTTCAAACAGCTACC----AACAGGTATTGATGACTTCAGGTGGTAAAAAATTTAAACATAAAAA--GAGAATGTATAGTGTTCCAAA-AGTGTTTTACTCTTTTAGAATTATCATTGTTA
i otoGar3.GL873550         I 31 I 1
s dasNov3.JH580105            35789 176 -     45298 --------GAATGGGGGTGCCTCAGTGAGGCTGGGCA-GCCACCAGCAAGAA-GGAAACACCCAGTATTTGAACACGACCCGAGATTTTCAAA---TTGTCCCCAAACAGACCCTGGTGGCTTCATGTGGAGG-------------AAAGAGAAAGAAGATGTGGTGTGCCGGGCTGCACTCACCTCCCTGGGATCTGTGGG-----
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58090360 2309 -  94987271 I
e canFam3.chr35            26323817 1751 +  26524999 I
e aotNan1.NW_018496904v1     371901 5010 -    383796 M
e manLeu1.NW_012107142v1     303215 630 -    735854 M

a score=273278.000000
s hg38.chr6_GL000254v2_alt  1459096 24 +   4827813 TCCTGGGTCATCCATCCACTGGAC
s panTro5.chr6             30328547 24 + 175400573 TCCTGGGTCATCCATCCACTGGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562910 24 + 173848474 TCCTGGGTCATCCATCCACTGGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269962 24 +   2037526 TCCTGGGTCATCCATCCACTGGAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74937003 24 + 122973662 TCCTGGGTTATCCATCCACTGGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30816529 24 + 172585720 TCCCGGGTTATCCATCCACTGGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30106017 24 - 170955103 TCCCGGGTTATCCATCCACTGGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     354870 24 +   1495729 TCCCGGGTTATCCATCCACTGGAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     454717 24 -    863181 TCCCGGATTATCTATCCACTGGAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29604971 24 -  71996105 TCCCGGGTTATCCATCCACTGGAC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     243332 24 -   1829203 TCCCAGGTTATCCATCCACTGGAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30436373 24 + 171630274 TCCTGGGTTATCCATCCACTGGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           248004 24 +    515838 TCCTGGGTTATCCATCCACTGGAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     874605 24 -   1771730 tCCTGGGTTATCCATCCACTGGAC
i cebCap1.NW_016107755v1   I 323 C 0
s micMur3.chr6               333688 24 + 123392446 CCTTGAGTTATCCATCCACAGGAC
i micMur3.chr6             I 1 C 0
s proCoq1.NW_012149775v1     139002 24 -   1411461 CCTTGAGTTATCCATCCATGGGAC
i proCoq1.NW_012149775v1   I 1 C 0
s otoGar3.GL873550           292081 24 +  18854210 CCCTGGATTATCTATTCACTGGAC
i otoGar3.GL873550         I 1 C 0
s dasNov3.JH580105            35965 23 -     45298 GCCTAGG-CGGCCATCCCCTGGCC
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58090360 2309 -  94987271 I
e canFam3.chr35            26323817 1751 +  26524999 I
e aotNan1.NW_018496904v1     371901 5010 -    383796 M
e manLeu1.NW_012107142v1     303215 630 -    735854 M

a score=73056.000000
s hg38.chr6_GL000254v2_alt  1459120 7 +   4827813 TGAATGG
s panTro5.chr6             30328571 7 + 175400573 TGAATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562934 7 + 173848474 TGAATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269986 7 +   2037526 TGAATGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74937027 7 + 122973662 TGAGTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30816553 7 + 172585720 TGAATGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30106041 7 - 170955103 TGAATGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     354894 7 +   1495729 TGAATGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     454741 7 -    863181 TGAATGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29604995 7 -  71996105 TGAATGG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     243356 7 -   1829203 TGAATGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30436397 7 + 171630274 TGAATGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           248028 7 +    515838 TGAATGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     874629 7 -   1771730 TGAATGG
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     139026 7 -   1411461 TGAATGG
i proCoq1.NW_012149775v1   C 0 C 0
s dasNov3.JH580105            35988 7 -     45298 TGGCTGG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               333712 0 + 123392446 C
e mm10.chr17               58090360 2309 -  94987271 I
e canFam3.chr35            26323817 1751 +  26524999 I
e otoGar3.GL873550           292105 0 +  18854210 C
e aotNan1.NW_018496904v1     371901 5010 -    383796 M
e manLeu1.NW_012107142v1     303215 630 -    735854 M

a score=35353.000000
s hg38.chr6_GL000254v2_alt  1459127  8 +   4827813 A-----------------------------------------GATATAT
s panTro5.chr6             30328578  8 + 175400573 A-----------------------------------------GATATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562941  8 + 173848474 A-----------------------------------------Gatatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     269993  8 +   2037526 A-----------------------------------------GATATAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74937034  8 + 122973662 A-----------------------------------------GATATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30816560  8 + 172585720 a-----------------------------------------tatatat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30106048  8 - 170955103 a-----------------------------------------tatatat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     354901  8 +   1495729 a-----------------------------------------tatatat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     454748  8 -    863181 A-----------------------------------------TATATAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29605002 49 -  71996105 AGATacacacacacacacacacacacacacatatatacacattatatat
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     243363  8 -   1829203 A-----------------------------------------Gatatat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30436404  8 + 171630274 A-----------------------------------------TATATAt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           248035  8 +    515838 A-----------------------------------------TATATAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     874636  8 -   1771730 A-----------------------------------------TATATAt
i cebCap1.NW_016107755v1   C 0 I 34
e micMur3.chr6               333712  0 + 123392446 C
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH580105            35995  0 -     45298 C
e proCoq1.NW_012149775v1     139033  0 -   1411461 C
e canFam3.chr35            26323817 1751 +  26524999 I
e otoGar3.GL873550           292105  0 +  18854210 C
e aotNan1.NW_018496904v1     371901 5010 -    383796 M
e manLeu1.NW_012107142v1     303215 630 -    735854 M

a score=20585.000000
s hg38.chr6_GL000254v2_alt  1459135 5 +   4827813 ATATA
s panTro5.chr6             30328586 5 + 175400573 ATATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562949 5 + 173848474 atata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     270001 5 +   2037526 ATATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74937042 5 + 122973662 ATACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30816568 5 + 172585720 atata
i rheMac8.chr4             C 0 I 61
s macFas5.chr4             30106056 5 - 170955103 atata
i macFas5.chr4             C 0 I 60
s macNem1.NW_012012100v1     354909 5 +   1495729 atata
i macNem1.NW_012012100v1   C 0 I 151
s cerAty1.NW_012002535v1     454756 5 -    863181 ATACA
i cerAty1.NW_012002535v1   C 0 I 8
s chlSab2.chr17            29605051 5 -  71996105 acaca
i chlSab2.chr17            C 0 I 2
s colAng1.NW_012115577v1     243371 5 -   1829203 atata
i colAng1.NW_012115577v1   C 0 I 38
s saiBol1.JH378341           248043 1 +    515838 ----A
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6               333712 0 + 123392446 C
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH580105            35995 0 -     45298 C
e proCoq1.NW_012149775v1     139033 0 -   1411461 C
e canFam3.chr35            26323817 1751 +  26524999 I
e otoGar3.GL873550           292105 0 +  18854210 C
e aotNan1.NW_018496904v1     371901 5010 -    383796 M
e cebCap1.NW_016107755v1     874644 34 -   1771730 I
e calJac3.chr4             30436412 0 + 171630274 C
e manLeu1.NW_012107142v1     303215 630 -    735854 M

a score=6545.000000
s hg38.chr6_GL000254v2_alt  1459140 6 +   4827813 CATA-TA
s panTro5.chr6             30328591 6 + 175400573 CACA-TA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562954 6 + 173848474 tata-ta
i panPan2.chr6             C 0 I 19
s gorGor5.CYUI01015528v1     270006 6 +   2037526 CATA-TA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74937047 2 + 122973662 TA-----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30816634 6 + 172585720 cata-ta
i rheMac8.chr4             I 61 C 0
s macFas5.chr4             30106121 6 - 170955103 caTA-TA
i macFas5.chr4             I 60 C 0
s cerAty1.NW_012002535v1     454769 7 -    863181 CACACTA
i cerAty1.NW_012002535v1   I 8 C 0
s chlSab2.chr17            29605058 6 -  71996105 cata-ta
i chlSab2.chr17            I 2 C 0
s colAng1.NW_012115577v1     243414 6 -   1829203 caTA-TA
i colAng1.NW_012115577v1   I 38 C 0
e micMur3.chr6               333712 0 + 123392446 C
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH580105            35995 0 -     45298 C
e proCoq1.NW_012149775v1     139033 0 -   1411461 C
e canFam3.chr35            26323817 1751 +  26524999 I
e saiBol1.JH378341           248044 0 +    515838 C
e otoGar3.GL873550           292105 0 +  18854210 C
e aotNan1.NW_018496904v1     371901 5010 -    383796 M
e cebCap1.NW_016107755v1     874644 34 -   1771730 I
e calJac3.chr4             30436412 0 + 171630274 C
e manLeu1.NW_012107142v1     303215 630 -    735854 M
e macNem1.NW_012012100v1     354914 151 +   1495729 I

a score=25025.000000
s hg38.chr6_GL000254v2_alt  1459146 21 +   4827813 T-TTTTtttctttcttctttc-----t
s panTro5.chr6             30328597 18 + 175400573 TAtttttttctttc----ttc-----t
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     270012 15 +   2037526 --tttttttctttc----ttc------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74937049 16 + 122973662 --TTtttttctttc----ttc-----t
i nomLeu3.chr1a            C 0 I 2
s rheMac8.chr4             30816640 17 + 172585720 tatttttttctttc----ttc------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30106127 16 - 170955103 TA-ttttttctttc----ttc------
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     454776 22 -    863181 TATTTTtttctttc----ttcttctt-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29605064 17 -  71996105 tatttttttctttc----ttc------
i chlSab2.chr17            C 0 I 2
s colAng1.NW_012115577v1     243420 15 -   1829203 TAtttttttctttc----t--------
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               333712  0 + 123392446 C
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH580105            35995  0 -     45298 C
e proCoq1.NW_012149775v1     139033  0 -   1411461 C
e canFam3.chr35            26323817 1751 +  26524999 I
e saiBol1.JH378341           248044  0 +    515838 C
e otoGar3.GL873550           292105  0 +  18854210 C
e aotNan1.NW_018496904v1     371901 5010 -    383796 M
e cebCap1.NW_016107755v1     874644 34 -   1771730 I
e calJac3.chr4             30436412  0 + 171630274 C
e manLeu1.NW_012107142v1     303215 630 -    735854 M
e macNem1.NW_012012100v1     354914 151 +   1495729 I
e panPan2.chr6             30562960 19 + 173848474 I

a score=4730.000000
s hg38.chr6_GL000254v2_alt  1459167 2 +   4827813 tt
s panTro5.chr6             30328615 2 + 175400573 tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562979 2 + 173848474 tt
i panPan2.chr6             I 19 C 0
s gorGor5.CYUI01015528v1     270027 1 +   2037526 -t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74937067 2 + 122973662 tt
i nomLeu3.chr1a            I 2 C 0
s cerAty1.NW_012002535v1     454798 2 -    863181 ct
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29605083 2 -  71996105 tt
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012107142v1     303845 2 -    735854 tt
i manLeu1.NW_012107142v1   M 630 C 0
s colAng1.NW_012115577v1     243435 2 -   1829203 tt
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               333712 0 + 123392446 C
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH580105            35995 0 -     45298 C
e proCoq1.NW_012149775v1     139033 0 -   1411461 C
e canFam3.chr35            26323817 1751 +  26524999 I
e saiBol1.JH378341           248044 0 +    515838 C
e otoGar3.GL873550           292105 0 +  18854210 C
e aotNan1.NW_018496904v1     371901 5010 -    383796 M
e cebCap1.NW_016107755v1     874644 34 -   1771730 I
e calJac3.chr4             30436412 0 + 171630274 C
e macNem1.NW_012012100v1     354914 151 +   1495729 I
e macFas5.chr4             30106143 0 - 170955103 C
e rheMac8.chr4             30816657 0 + 172585720 C

a score=251315.000000
s hg38.chr6_GL000254v2_alt  1459169 41 +   4827813 ttttttttttttgagacagagtttcactattattgcccaga
s panTro5.chr6             30328617 41 + 175400573 ttttttttttttgagacagagtttcactattattgcccaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30562981 41 + 173848474 ctttttttttttgagacagagtttcactattattgcccaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     270028 41 +   2037526 ttttttttttttgagacagagtttcactattattgcccaga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74937069 41 + 122973662 ttttttttttttgagacagagtttcactattattgcctaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30816657 41 + 172585720 ttttttttttttgagacagagtttcactcttattgcccaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30106143 41 - 170955103 ttttttttttttgagacagagtttcactcttattgcccaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     355065 41 +   1495729 tttttttgttttgagacagagtttcactcttattgcccaca
i macNem1.NW_012012100v1   I 151 C 0
s cerAty1.NW_012002535v1     454800 41 -    863181 ttttttttttttgagacagagtttcactcttattgcccata
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29605085 41 -  71996105 ttttttttttttgagacagagtttcactcttattgcccaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     303847 41 -    735854 ttttttttttttgagacagagtttcactcttattgcccaca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     243437 41 -   1829203 ttctttttttttgagacagagtttcactcttattgcccaca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30436412 35 + 171630274 ------ttttttgagacggagttttgcttgtgttacactgg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           248044 35 +    515838 ------tttttcgagacagagttttgcttgtgctgcactgg
i saiBol1.JH378341         C 0 C 0
s dasNov3.JH580105            35995  8 -     45298 ------TCCCTGGA---------------------------
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               333712  0 + 123392446 C
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139033  0 -   1411461 C
e canFam3.chr35            26323817 1751 +  26524999 I
e otoGar3.GL873550           292105  0 +  18854210 C
e aotNan1.NW_018496904v1     371901 5010 -    383796 M
e cebCap1.NW_016107755v1     874644 34 -   1771730 I

a score=2272504.000000
s hg38.chr6_GL000254v2_alt  1459210 257 +   4827813 ctggagtgcaatggcgtgatctcggttcactacaacctctgaatccccggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggcacctgccaccacatccagctaa-ttttttgtatttttaatagagacggggtttcaccacgttggccaggctggtcttgaac---------tcctgacctcagatgacccacctgcctcagcctcccaaagt-gctgggattacaggcgtgagccactgtgcccagccCT
s panTro5.chr6             30328658 257 + 175400573 ctggagtgcaatggcgtgatctcggttcactacaacctctgaatccccggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcacctgccaccacatccagctaa-ttttttgtatttttaatagagacggggtttcaccacgttggccgggctggtcttgaac---------tcctgacctcagatgacccacctgcctcagcctcccaaagt-gctgggattacaggtgtgagccactgtgcccagccCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30563022 257 + 173848474 ctggagtgcaatggcgtgatctcggttcactacaacctctgaatccccggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcacctgccaccacatccagctaa-ttttttgtatttttaatagagacggggtttcaccacgttggccgggctggtcttgaac---------tcctgacctcagatgacccacctgcctcagcctcccaaagt-gctgggattacaggtgtgagccactgtgcccagccCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     270069 257 +   2037526 ctggagtgcaatggcgtgatctcggttcactacaacctctgaatccccagttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcacctgccaccacatccagctaa-ttttttgtatttttaatagagacggggtttcaccacgttggccgggctggtcttgaac---------tcctgacctcagatgacccacctgcctcagcttcccaaagt-gctgggattacaggcatgagccactgtgcccagccCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74937110 258 + 122973662 ccggggtgcaatggcatgatctcggttcattacaacctctgactcctaggttcaagcgattctcctgcctcagcctcccaagtagctgggattataggcacccaccaccacacccagctaatttttttgtatttttaatagagacggggtttcgccatgttggccaggctggtcttgaac---------tcctgacctcagatgacccacctgcctcagcctcccaaagt-gctgggattacagttgtgagccactgtgcccagccCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30816698 257 + 172585720 ctggagtgcaatggcatgatctcggttcactacaacctctgacatccagattcaagagattctcctgcctcagcctcccaagtagctgggattataggcacccaccaccacacccagctaa-ttttttgtatttttaatagagacggggtttcaccatgttggccgggccagtcttgaac---------tcctgacctcagatgacccacctgcctcagcctcccaaagt-gctgagattacaggcgtgagccactgtgcccagccCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30106184 257 - 170955103 ctggagtgcaatggcatgatctcggttcactacaacctctgacatccagattcaagagattctcctgcctcagcctcccaagtagctgggattataggcacccaccaccacacccagctaa-ttttttgtatttttaatagagacggggtttcaccacgttggccgggccagtcttgaac---------tcctgacctcagatgacccacctgcctcagcctcccaaagt-gctgagattacaggcgtgagccactgtgcccagccCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     355106 257 +   1495729 ctggagtgcaatggcatgatctcggttcactacaacctctgacatccaggttcaagagattctcctgcctcagcctcccaagtagctgggattataggcacccaccaccacacccagctaa-ttttttgtatttttaatagagacggggtttcaccacgttggccgggccagtcttgaac---------tcctgacctcagatgacccacctgcctcagcctcccaaagt-gctgagattacaggcgtgagccactgtgcccagccCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     454841 257 -    863181 ctggagtgcaatggcatgatctcggttcactacaacctctgacatccagattcaagcgattctcctgcctcagcctcccaagtagctgggattataggcacccaccatcacacccagctaa-ttttttgtatttttaatagagacggggtttcaccacgttggccgggccagtcttgaac---------tcctgacctcagatgacccacctgcctcagcctcccaaagt-gctgagattacaggcgtgagccactgtgtccagccCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29605126 257 -  71996105 ctggagtgcaatggcatgatctcggttcactacaacctctgacatccagattcaagcgattctcctgcctcagcctcccaagtagctgggattataggcacccaccaccacacccagctaa-ttttttgtatttttaatagagacggggtttcaccacgttggccgggccagtcttgaac---------tcctgacctcagatgacccacctgcctcagcctcccaaagt-gctgagattacaggcgtgagccactgtgcccagccCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     303888 257 -    735854 ctggagtgcaatggcatgatctcggttcactacaacctctgacatccagattcaagcgattctcctgcctcagcctcccaagtaggtgggattataggcacccaccaccacacccagctaa-ttttttgtatttttaatagagacggggtttcaccacgttggccgggcctgtcttgaac---------tcctgacctcagatgacccacctgcctcagcctcccaaagt-gctgagattacaggcgtgagccactgtgcccagccCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     243478 257 -   1829203 ccggagtgcaatagcatgatcttggttcaccacaacctctgacatccagattcaagcgattctcctgcctcagcctcccaagtagctaggattataggcacccaccaccacacccagctaa-ttttttgtatttttaatagagacggagtttcaccacgttggccgggacggtcttgaac---------tcctgacctcagatgactcacctgcctcaacctcccacagt-gctgagattacaggtgtgagccactgtgcccagccCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30436447 257 + 171630274 ctggagtgcaatggtgcgatatcggctcactgtaacttctgcctcccaggttcaagcaattctcctgcctcagcctgccaagtagctgggattacaggcacctgccaccacacccagataa-ttttttgtatttttagtatagatgaggtttcaccacattggccaggctggtcttgaac---------tcctgacctcaggtgacccacctgcctcagcctcccaaagt-gctgggattacaggtgtgagccactgcacccagccCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           248079 257 +    515838 ctggagtgcaatggtgcaatctcggctcactgcaactcctgcctcccaggttcaagtgattctcctgcctcagcctcccaggtagctgggattataggcacctgccaccacacccagctaa-tattttgcatttttagtatagatgaggttttaccacgttggccaggctggtcttgaac---------tcctgacctcaggtgacccacctgcctcagcatcccaaagt-gctgggattacaggtgtgagccactgcacccagtcCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     874678 257 -   1771730 ctggagtgcaatggtgcaatctcagctcactgcaacttctgcctcccaggttcaagcaattctcctgcctcagcctcccaggtaactgggattacaggcacctgccaccacacccagctaa-tattttgcatttttagtatagacgaggtttcaccacgttggccaggctggtcttgaac---------tcctgacctcaggtgacccacccgcctcagcctcccaaagt-gctgggattacaggtgtgagccactgcacccagccCC
i cebCap1.NW_016107755v1   I 34 C 0
s dasNov3.JH580105            36003 210 -     45298 ---------------------CCGGCTGGT-----CCCCTGGGCTCCTG-----------TCCCCTGGCC------------TGGCTGATCTCTTGGGCTCCTGTCTcctggcctggctgg-tccttggcctggctggtcc--cctgggctgccgtcccctggcttggctggtccctggcctggctggtccctgacctggctggtcccttgggctcctgtcccctgacatggctgg--tccctggcctg----gttggtccctgccct
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               333712   0 + 123392446 C
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139033   0 -   1411461 C
e canFam3.chr35            26323817 1751 +  26524999 I
e otoGar3.GL873550           292105   0 +  18854210 C
e aotNan1.NW_018496904v1     371901 5010 -    383796 M

a score=88910.000000
s hg38.chr6_GL000254v2_alt  1459467 7 +   4827813 TGAATGG
s panTro5.chr6             30328915 7 + 175400573 TGAATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30563279 7 + 173848474 TGAATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     270326 7 +   2037526 TGAATGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74937368 7 + 122973662 TGAATGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30816955 7 + 172585720 TGAATGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30106441 7 - 170955103 TGAATGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     355363 7 +   1495729 TGAATGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     455098 7 -    863181 TGAATGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29605383 7 -  71996105 TGAATGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     304145 7 -    735854 TGAATGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     243735 7 -   1829203 TGAATGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30436704 7 + 171630274 TGAATGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           248336 7 +    515838 TGAATGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     874935 7 -   1771730 TGAATGG
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               333712 7 + 123392446 TGAATGG
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           292105 7 +  18854210 TGAATGG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            36213 7 -     45298 ggcctgg
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139033 0 -   1411461 C
e canFam3.chr35            26323817 1751 +  26524999 I
e aotNan1.NW_018496904v1     371901 5010 -    383796 M

a score=572543.000000
s hg38.chr6_GL000254v2_alt  1459474 47 +   4827813 ATATCTTAAACTC--T---TAGTAGGCTCAGTAGTCTG--AAACCAAA-TGCCTC
s panTro5.chr6             30328922 47 + 175400573 ATATCTTAAACTC--T---TAGTAGGCTCAGTAGTCTG--AAACCAAA-TGCCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30563286 47 + 173848474 ATATCTTAAACTC--T---TAGTAGGCTCAGTAGTCTG--AAACCAAA-TGCCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     270333 47 +   2037526 ATATCTTAAACTC--T---TAGTAGGCTCAGTAGTCTG--AAACCAAA-TGCCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74937375 47 + 122973662 ATATCTTAAACTC--T---TAGTAGGCTCAGTAGTCTG--AAACCAAA-TGCCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30816962 46 + 172585720 AAATCTTAAACTC--T---TAGTAGGCTCAGTAGTCTG--AAACCAAA--GTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30106448 46 - 170955103 AAATCTTAAACTC--T---TAGTAGGCTCAGTAGTCTG--AAACCAAA--GTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     355370 46 +   1495729 AAATCTTAAACTC--T---TAGTAGGCTCAGTAGTCTG--AAACCAAA--GTCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     455105 46 -    863181 AAATCTTAAACTC--T---TAGTAGGCTCAGTGGTCTG--AAACCAAA--GCCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29605390 46 -  71996105 AAATCTTAAACTC--T---TAGTAGGCTCAGTGGTCTG--AAACCAAA--GCCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     304152 46 -    735854 AAATCTTAAACTC--T---TAGTAGGCTCAGTGGTCTG--AAACCAAA--GCCTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     243742 46 -   1829203 ATATCTTAAACTC--T---TAGTAGGCTCAGTGGTCTG--AAACCAAA--GCCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30436711 47 + 171630274 ATATCTTAAACTC--T---TAGTAGTCTCAGTAGTCTG--AAACGAAA-TGTCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           248343 47 +    515838 ATATCTTAAACTC--T---TAGTAGCCTCAGTAGTCTG--AAACCAAA-TGCCTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     874942 49 -   1771730 ATATCTTAAACTCTTT---TAGTAGCCTCAGTAGTCTG--AAACCAAA-TGCCTC
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               333719 49 + 123392446 CTATTTTAAACTC--T---TAGCAGGCTCAGTAGTCTGAAAAACCAAG-TTCCTC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     139033 49 -   1411461 ATATTTTAAACTC--T---TAGCAGGCTCAGTAGTCTGAAAAACCAAA-TGCCTC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           292112 47 +  18854210 ACATTTTAAACTC--T---TCGCAGGCTCAGTAGACTG--AAACCAAA-TGCCTC
i otoGar3.GL873550         C 0 I 556
s dasNov3.JH580105            36220 42 -     45298 ---------actC--TTACTAGTGGGCTCAGGAGCCTG--AAACCAAAGTGCCTC
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58090360 2309 -  94987271 I
e canFam3.chr35            26323817 1751 +  26524999 I
e aotNan1.NW_018496904v1     371901 5010 -    383796 M

a score=348640.000000
s hg38.chr6_GL000254v2_alt  1459521 27 +   4827813 CAATTTGCAAGGGCTAGGGTCTTGAGA
s panTro5.chr6             30328969 27 + 175400573 CAGTTTGCAAGGGCTAGGGTCTTGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30563333 27 + 173848474 CAGTTTGCAAGGGCTAGGGTCTTGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     270380 27 +   2037526 CAGTTTGCAAGGGCTAGGGTCTTGAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74937422 27 + 122973662 CAGTTTGCAAGGGCTAGGGTCTTGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30817008 27 + 172585720 CAATTTGCAAGGGCTAGGGTCTTGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30106494 27 - 170955103 CAATTTGCAAGGGCTAGGGTCTTGAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     355416 27 +   1495729 CAATTTGCAAGGGCTAGCGTCTTGAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     455151 27 -    863181 CAATTTGCAAGGGCTAGGTTCTTGAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29605436 27 -  71996105 CAATTTGCGAGGGCTAGGGTCTTGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     304198 27 -    735854 CAATTTGCAAGGGCTAGGTTCTTGAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     243788 27 -   1829203 CAATTTGCAAGGGCTAGGGTCTTGAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30436758 27 + 171630274 CAATTTGCAAGGGCTGGGGTTTTGAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           248390 27 +    515838 CAATTTGCAAGAGCTGGGGTCTTAAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     874991 27 -   1771730 CAATTTGCAAGGGCTGGCGTCTTGAGA
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               333768 27 + 123392446 CAATTTGCAAGTGCTGGGGTCTTGAGA
i micMur3.chr6             C 0 I 29247
s proCoq1.NW_012149775v1     139082 27 -   1411461 CAATTTGCAAGTGCTGGGATCTTGAGA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           292715 27 +  18854210 CAGTTTACAAGTGGTGGGGTCTGGAAA
i otoGar3.GL873550         I 556 C 0
s dasNov3.JH580105            36262 26 -     45298 -TGGTCTCAAGAGCCAGGGTCCTGAGA
i dasNov3.JH580105         C 0 C 0
e mm10.chr17               58090360 2309 -  94987271 I
e canFam3.chr35            26323817 1751 +  26524999 I
e aotNan1.NW_018496904v1     371901 5010 -    383796 M

a score=679276.000000
s hg38.chr6_GL000254v2_alt  1459548 63 +   4827813 TAGTTGGTATTGTGTTAGTTCCAAAG-------GACTTCCAAGCCAATTCTGAGGCATAGAGTTTATAAA
s panTro5.chr6             30328996 63 + 175400573 TAGTTGGTATTGTGTTAGTTCCAAAG-------GACTTCCAAGCCAATTCTGAGGCATAGAGTTTATAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30563360 63 + 173848474 TAGTTGGTATTGTGTTAGTTCCAAAG-------GACTTCCAAGCCAATTCTGAGGCATAGAGTTTATAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     270407 63 +   2037526 TAGTTGGTATTGTGTTAGTTCCAAAG-------GACTTCCAAGCCAATTCTGAGGCATAGAGTTTATAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74937449 63 + 122973662 GAGTTGATATTGTGTTAGTTCCAAAG-------GACTTCCAAGCCAATTCTGAGGCATAGAGTTTATAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30817035 63 + 172585720 GAGTTGGTACTGTGTTAGTTCCAAAG-------GACTTCCAAGCCAATTCTGAGGCATAGAGTTTATAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30106521 63 - 170955103 GAGTTGGTACTGTGTTAGTTCCAAAG-------GACTTCCAAGCCAATTCTGAGGCATAGAGTTTATAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     355443 63 +   1495729 GAGTGGGTACTGTGTTAGTTCCAAAG-------GACTTCCAAGCCAATTCTGAGGCATAGAGTTTATAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     455178 63 -    863181 GAGTTGGTACTGTGTTAGTTCCAAAG-------GACTTCCAAGCCAATTCTGAGGCATAGAGTTTATAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29605463 63 -  71996105 GAGTTGGTACTGTGTTCGTTCCAAAG-------GACTTCCAAGCCAATTCTGAGGCGTAGAGTTTATAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     304225 63 -    735854 TAGTTGGTATTGTGTTAGTTCCAAAG-------GACTTCCAAGCCAATTCTGAGGCATAGAGTTTATAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     243815 63 -   1829203 GAGTTGGTATTGTGTTAGTTCCAAAG-------GACTTCCAAGCCAATTCTGAGGCATAGAGTTTATAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30436785 63 + 171630274 GAGCTGTTATTGTGTTAGTTCCAAAG-------GACTTCCAAGTCAACTCTGAGGCATAGAGTTTATAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           248417 63 +    515838 GAGCTAGTATTATGTTAGTTCCAAAG-------GACTTCCAAGTCAACTCTGAGGCATAGAGTTTCTAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     875018 63 -   1771730 GAGCTGGTATTGTGTTAGTTTCAAAG-------GACTTCCAAGTCAACTCTGAGGCATAGAGTTTATAAA
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     139109 60 -   1411461 GAGAT-AGATTGTACTAATTCCAAAG-------AACTTCCAAGCCAA--CTGGGGCATAGAATTTATAAA
i proCoq1.NW_012149775v1   C 0 I 101
s otoGar3.GL873550           292742 61 +  18854210 GAGATGATATTGTATTACTTCCAAAG-------AATTTCCAAGCCAA--CTGGGACATAGAATTTATAAA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            36288 61 -     45298 -GAGGGGGGCTGTGTC-GCTCCAAAGGGGCCGTGACTGCCAAGTCG---CTGG---ATGGAGTTACGAG-
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e canFam3.chr35            26323817 1751 +  26524999 I
e aotNan1.NW_018496904v1     371901 5010 -    383796 M

a score=966102.000000
s hg38.chr6_GL000254v2_alt  1459611 109 +   4827813 AATTAGCCATAGAACAGGAAATGATGCAGAGC-CTCATGCACATG----AGACAG---------------------------------------------CTGTCACACACAAGAA---------AGCAGACACAGAGCCATGCAGCAGCGAGTGCACAGATCTGGAG
s panTro5.chr6             30329059 109 + 175400573 AATTAGCCATAGAACAGGAAATGATGCAGAGC-CTCATGCACATG----AGACAG---------------------------------------------CTGTCACACACAAGAA---------AGCAGACACAGAGCCACGCAGCAGTGAGTGCACAGATCTGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30563423 109 + 173848474 AATTAGCCATAGAACAGGAAATGATGCAGAGC-CTCATGCACATG----AGACAG---------------------------------------------CTGTCACACACAAGAA---------AGCAGACACAGAGCCACGCAGCAGTGAGTGCACAGATCTGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     270470 109 +   2037526 AATTAGCCGTAGAACAGGAAATGATGCAGAGC-CTCATGCACATG----ACACAG---------------------------------------------CTGTCACACACAAGAA---------AGCAGACACAGAGCCATGCAGCAGTGAGTGCACAGATCTGGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74937512 109 + 122973662 AATTAGCCATAGAACAGGAAATGATGCAGAGCTCTCATGCACATG----AGACAG---------------------------------------------CTGTCACACACAAGGA---------AGCAGACACAGAGCCATGCAGCAGCCA-TGCACAGATCTGGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30817098 110 + 172585720 AATTAGCCATAGAACAGGAAATGATGCAGAGCTCTAATGCACATG----AGACAG---------------------------------------------CTATCACACACAAGAA---------AGTAGACACAGAGCCATGCAGCAGCAGGTGCACAGATCTGGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30106584 110 - 170955103 AATTAGCCATAGAACAGGAAATGATGCAGAGCTCTAATGCACATG----AGACAG---------------------------------------------CTATCACACACAAGAA---------AGTAGACACAGAGCCATGCAGCAGCAGGTGCACAGATCTGGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     355506 110 +   1495729 AATTAGCCATAGAACAGGAAATGATGCAGAGCTCTAATGCACATG----AGACAG---------------------------------------------CTATCACACACAAGAA---------AGTAGACACAGAGCCATGCAGCAGCAGGTGCACAGATCTGGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     455241 110 -    863181 AATTAGCCATAGAACAGGAAATGATGCAGAGCTCTCATGCGCATG----AGACAA---------------------------------------------CTATCACACACAAGAA---------AGTAGACACAGAGCCATGCAGTAGCAGGTGCACAGATCTGGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29605526 110 -  71996105 AATTAGCCATAGAACAGGAAATGATGCAGAGCTCTCATGCGCATG----AGACAG---------------------------------------------CTATCACACACAAGAA---------AGTAGACACAGAGCCATGCAGCAGCAGGTGCACAGATCTGGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     304288 110 -    735854 AATTAGCCATAGAATGGGAAATGATGCAGAGCTCTCATGCGCATG----AGACAG---------------------------------------------CTATCACACACAAGAA---------AGTAGACACAGAGCCATACAGCAGCAGGTGCACAGATCTGGAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     243878 110 -   1829203 AATTAGCCATAGAACAGGAAATGATGCAGAGCTCTCATGCGCATG----AGACAG---------------------------------------------CTATCACACACAAGAA---------AGTAGACACAGAGCCATGCAGCCGCAGGTGCACAGATCTGGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30436848 108 + 171630274 AATTAGCCATAGAAGAGGAAGTGATGCAGAGCTGTCATGCAC--G----AGACAG---------------------------------------------CTATCACACACAAGAA---------AGCAGACAAGGAGCCATGCAGCCGTGGGCGCACAGATCTGGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           248480 108 +    515838 AATTAGCCATAGAAGAGGAAGTAATGCAGAGCTCTCCTGCAC--G----AGACAG---------------------------------------------CTATCACACACAAGAA---------GGCAGACAAGGAGCCACGCAGCCGTGGGTGCACAGATCTGAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     875081 108 -   1771730 AATTAGCCATAGAAGAGGAAGTGATGCAGAGCTCTCATACAC--A----AGACAG---------------------------------------------CTATCACACACAAGAA---------AGCAGACAAGGAGCCACCCAGCCGTGGGCGCACAGATCTGGAG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           292803 167 +  18854210 TTGTAGCCATAAAAGAGG-AGTAATGGAGAGCTATTATATACATGACCTAGACAGACACAAATGCAAGTAGGTAAAtactaaaggtgacaaagtgagactctgtccaaaaaaagaaaaaagagagaaCAGGTAAGGAGTCACACAGCAATGGGTACACAAATCTAGAG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            36349  87 -     45298 CGTTGGCTGCAGAGGAGGAAGTGATGTTGAGC--TGGTCCCCAGG----AGGCAG---------------------------------------------CCAGCCCA------GG---------AGCGGGCAGGGAG---------------TGGACAGAGGGGGAG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139169 101 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I
e aotNan1.NW_018496904v1     371901 5010 -    383796 M

a score=15300.000000
s hg38.chr6_GL000254v2_alt  1459720 1 +   4827813 G
s panTro5.chr6             30329168 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30563532 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     270579 1 +   2037526 G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74937621 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30817208 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30106694 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     355616 1 +   1495729 G
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     455351 1 -    863181 G
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29605636 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     304398 1 -    735854 G
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     243988 1 -   1829203 G
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30436956 1 + 171630274 G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           248588 1 +    515838 G
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     875189 1 -   1771730 G
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     139270 1 -   1411461 G
i proCoq1.NW_012149775v1   I 101 C 0
s otoGar3.GL873550           292970 1 +  18854210 G
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH580105            36436 1 -     45298 G
i dasNov3.JH580105         C 0 I 795
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e canFam3.chr35            26323817 1751 +  26524999 I
e aotNan1.NW_018496904v1     371901 5010 -    383796 M

a score=3327184.000000
s hg38.chr6_GL000254v2_alt  1459721 329 +   4827813 GGACCTGCCAAGACTAATGGGATGAGACACCTTATCAGAGGCCAGTGAAGGCTAGAGGCAGCTCAGTTGTCAGACTAGACAGC----------CCCACAATGTTACATAAGCCTCCCTGCATCACGATTCCAGCTACAGAAGCTTCCCCTGCCTCAGGATTCACATTTC-CGGGCCTAtgtgaattggtagaatgtctatggaggaaaataatgtgatatgtttcaaaactacaaatgctcattccctttatcccagaaattccacctctgggaatttagtctacagatatactcacacatataaatttattttggactttgtggtaatgtttgcattag
s panTro5.chr6             30329169 329 + 175400573 GGACCTGCCAAGACTAATGGGATGAGACACCTTATCAGAGGCCAGTGAAGGCTAGAGGCAGCTCAGTTGTCAGACTAGACAGC----------CCCACAATGTTACATAAGCCTCCCTGCATCACGATTCCAGCTACAGAAGCTTCCCCTGCCTCAGGATTCACATTTC-CGGGCCTAtgtgaattggtagaatgtctatggaggaaaataatgtgatatgtttcaaaactacaaatgctcattccctttatcccagaaactccacctctgggaatttagtctacagatatactcacacatataaatttattttggactttgtggtaatgtttgcattag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30563533 328 + 173848474 GGACCTGCCAAGACTAATGGGATGAGACACCTTATCAGAGGCCAGTGAAGGCTAGAGGCAGCTCAGTTGTCAGACTAGACAGC----------CCCACAATGTTACATAAGCCTCCCTGCATCGCGATTCCAGCTACAGAAGCTTCCCCTGCCTCAGGATTCACATTTC-CGGGCCTAtgtgaattggtagaatgtctatggaggaaaataatgtgatatg-ttcaaaactacacatgctcattccctttatcccagaaattccacctccgggaatttagtctacggatatactcacacatatacatttattttggactttgtggtaatgtttgcattag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     270580 328 +   2037526 GGACCTGCCAAGACTAATGGGATGAGACACCTTATCAGAGGCCAGTGAAGGCTAGAGACAGCTCAGTTGTCAGATTAGACAGC----------CCCACAATGTTACATAA-CCTCCCTGCATCACGATTCCAGCTACAGAAGCTTCCCCTGTCTCAGGAGTCACATTTC-CGGGCCTAtatgaattggtagaatgtctatggaggaaaataatgtgatatgtttcaaaactacaaatgctcattccctttatcccagaaattccacctctgggaatttagtctacagatatactcacacatataaatttattttggactttgtggtaatgtttgcattag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74937622 329 + 122973662 GGACCTGCCAAGACTAATGGGATGAGACACCTTATCAGAGGCCAGTGAAGGCTAGAGGCAGCTCAACTGTCAGACTAGACAGC----------CCCACAATGTTACATAAGCCTCCCTGCATCAGGATTCCAGCTACAGAAGCTTCCCCTGCCCCAGGATTCCcatttc-tgggccaatgtgaattggtagaatgtctatggaggaaaataatgtgatatgtttcaaaactacaaatgctcattccctttatcccagaaattccatctctgggaatttagtctacagatatactcacacatataaatttattttggactttgtggtaatgtttgcattag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30817209 329 + 172585720 GGACCAGCCAAAACTAATGGGATGAGACACCTTTTCAGAGGCCAGTGAAGGCCAGAGGCAGCTCAGTTGTCAGACTAAACAGC----------CCCACCATGTTACACAAGCCTCCCTGCCTCAGGATTCCAGCTACAGAAGCTTCCCCGGCCTCAGGGTTCACATTTC-TGACCCaatgtgaattggtagcatgcctatggaggaaaataatgtgatatgtttcaaaactacaaatgctcattccctttatcccagaaattccacctctgggaaactagtctacagatatactcacacatataaatttattttggactttgtggtaatgtttgcattag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30106695 329 - 170955103 GGACCAGCCAAAACTAATGGGATGAGACACCTTTTCAGAGGCCAGTGAAGGCCAGAGGCAGCTCAGTTGTCAGACTAAACAGC----------CCCACCATGTTACACAAGCCTCCCTGCCTCAGGATTCCAGCTACAGAAGCTTCCCCGGCCTCAGGGTTCACATTTC-TGACCCaatgtgaattggtagcatgcctatggaggaaaataatgtgatatgtttcaaaactacaaatgctcattccctttatcccagaaattccacctctgggaaactagtctacagatatactcacacatataaatttattttggactttgtggtaatgtttgcattag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     355617 329 +   1495729 GGACCAGCCAAAACTAATGGGATGAGACACCTTTTCAGAGGCCAGTGAAGGCCAGAGGCAGCTCAGTTGTCAGACTAAACAGC----------CCCACCATATTACACAAGCCTCCCTGCCTCAGGATTCCAGCGACAGAAGCTTCCCCGGCCTCAGGGTTCacatttc-tggcccaatgtgaattggtagcatgtctatggaggaaaataatgtgatatgtttcaaaactacaaatgctcgttccctttatcccagaaattccacctctgggaaactagtctacagatatactcacacatataaatttattttggactttgtggtaatgtttgcattag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     455352 329 -    863181 GGACCTGCCAAGACTAATGGGATGAGACACCTTTTCAGAGGCCAGTGAAGGCCAGAGGCAGCTCAGTTGTCAGACTAGACAGC----------CCCACCATGTTACACAAGCCTCCCTGCCTCAGGATTCCAGCTACAGAAGCTTCCCTGGCCTCAGGGTTCACGTTTC-TGGCCCaatgtgaattggtagcatgtctatggaggaaaataatgtgatatgtttcaaaactacaaatgctcattccctttatcccagaaattccacctctgggaatctagtctacagatatactcacacatataaatttattttggactttgtggtaatgtttgcagtag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29605637 329 -  71996105 GGACCTGCCAAAACTAATGGGATGAGACATCTTTTCAGAGGCCAGTGAAGGCTAGAGGCAGCTCAGCTGTCAGACTAAACAGC----------CCCACCATGTTACACAAGCCTCCCTGTGTCAGGGTTCCAGCTACAGAAGTTTCCCTGGCCTCAGGGTTCacatttc-tggcccaatgtgaattggtagcatgtctagggaggaaaataatgtgatatgtttcaaaactgcaaatgctcattccctttataccagaaattccacctctgggaatctagtctacagatatactcacacatataaatttattttggactttgtggtaatgtttgcattag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     304399 329 -    735854 GGACCTGCCAAGACTAACTGGATGAGACACCTTTTCAGAGGCCAGTGAAGGCTAGAGGCAGCTCAGTTGTCAGACTAGACAGC----------CCCACAATGTTACACAAGCCTCCCTGCCTCAGGATTCCAGCTACAGAAGCTTCCCTGGCCTCAGGGTTCACGTTTC-TGGCCCaatgtgaattggtagcatatctatggaggaaaataatgtgatatgtttcaaaactacaaaggctcagtccctttatcccagaaattccacctctgggaatctagtctacagatatactcacacatataaatttattttggactttgtggtaatgtttgcattag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     243989 329 -   1829203 AGACCTGCCAAGACTAATGGGATGAGACACCTTTTCAGAGGCCAGTGAAGGCTAGAGGCAGCTCAGTTGTCAGACTAGACAGC----------CCCACCATGTTACACAAGCCTCCCTGCATCAGGATTCCAGCTACAGAAGATTCCCTGGCCTCAGGGTTCacatttc-tggcccagtgtaaattggtagcatgtctatggaggaaaataatgtgatatgtttcaaaactacaaatgctcgttccctttatcccagaaattccacctctgggaatctagtctatagatatactcacacatataaatttattttggactttgtggtaatgtttgcattag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30436957 325 + 171630274 -GACACACCAAGACTAATGGGATGAGACACCTTATCAGAGCCCAGTGAAGGCTAGAGGCAGCTCACTTGTCAGACTAGACAGC----------CTCACAACATTACATAAGCCTCCTTGCATCAGGATTCCAGCTACAG-AGCTGCTCCTGCCTCAGGATTCACATTTC-AGAGTCaatgtaaattgatagaatgtctacagaggtcaatactgt--tatgtttcaaaattacaaatgcttatctcctttgtcctagaaattccgcctctaggaatttattctgcagatatactaacacatataaatttactttggacttcatggtaatgttcgcattag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           248589 301 +    515838 -GACCTGCCAAGACTAATGGGATGAGACACCTTATCAGAGCCCAGGGAAGGCTAGAGGCAGCTCACTTGTCAGACTTTACAGC----------CTCACAATATTACATAAGCCTCCCTGCATCAGGATTCCAGCTACAGAAGCTGCTCCTGCCTCAGGATTCacatttc-tgggccaat-------------------------gtcaatactgtgatatgtttcaaaattacaaatgcttatcccctttatcctagaaattccacctctaggaatttattctacag--atactcacatatataaatttactttgaacttcatggtaatgtttgcattag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     875190 326 -   1771730 -GACATATGAAGACTAATGGGATGAGACACCTTATCAGAGCCCAGTGAAGGCTAGAGGCAGCTCACTTGTCAGACTGGACAGC----------CTCACAATGTTACAGAAGCCTCTTTGCATCAGGATTCCAGCTACAGAAGCTGCTCCTGCCTCAGGATTCACGGTTC-tgggccaatgtaaataggtagaatgtctatggaggtcaatattgtgatatgtttcaaaattacaaatgcttatcccctttatcctagaaattccacctctaggaatttattctacag--atactcacacacataaatttactttggacttcgtggtaatgtttgcattag
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     139271 333 -   1411461 GGACCTGCCAAGACTAATGGGATGAGAGACCTTATTAGAGGCTAGTGAGAGCCTGAGGTAGATCGGT-----GACTAGACACCCCTCCCCTG-CCCACAGTGTTACAGAAGCCTCCCTGCATCAGGATTCTGGCTGCATAAGCTTCCCCTACATCAGGATTCacatttc-tgggccaatgtgaattgctgtaatttccatggaggtcaatattgcaatatgtttcaaaggtacaaatgctcatcccctttatcccaggaattccacctctaagaatttgttctacagatacgctcacacacgtaaaagtactttggactttgtcgtaatgtttgcattag
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           292971 322 +  18854210 GGACCTGCCAAGACTAATGGGA-AAAATATCTTATCAGAAGCTAATGAGAAACAGAGGCAACTCAGC-----GACTAGACATCTCTCCCCTGACCCACAATGTTACATAAGCCTCCTTGCATCAGGATTCTAGCTGCGTAAGTTTCCCCTGCATCCGGATTCACATTTCTTAGACCaatgtgaattgttataatttcaatggaaatcaatattgcaatatgtttcagggttacaaatg------------atcccagaaattccacctctaagaattggttctacagatacactcatacacatagaagtactttggactttgtgataatgtttgcatcag
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH580105            36437 795 -     45298 I
e canFam3.chr35            26323817 1751 +  26524999 I
e aotNan1.NW_018496904v1     371901 5010 -    383796 M

a score=1671805.000000
s hg38.chr6_GL000254v2_alt  1460050 163 +   4827813 caaaatattagaaaacaatctaaatgtacatcagtatggaaatgtttaaataaattatagcccagctttataacagaatagaaataaaaaagaatcagggagttccttatttacatatggaaaatatggccaagatatgttgttatgtgaagaaaggaaaaaa
s panTro5.chr6             30329498 163 + 175400573 caaaatattagaaaacaacctaaatgtacatcagtatggaaatgtttaaataaattatagcccagctttataacagaatagaaataaaaaagaatcagggagttccttatttacatatggaaaatatggccaagatatgttgttatgtgaagaaaggaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30563861 163 + 173848474 caaaatattagaaaacaacctaaatgtacatcagtatggaaatgtttaaataaattatagcccagctttataacagaatagaaataaaaaagaatcagggagttccttatttacatatggaaaatatggccaagatatgttgttatgtgaagaaaggaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     270908 162 +   2037526 caaaatattagaaaacaacctaaatgtacatcagtatggaaatgtttaaataaattatagcccagctttataacggaatag-aataaaaaagaatcagggagttccttatttacatatggaaaatatggccaagatatgttgttatgtgaagaaaggaaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74937951 163 + 122973662 caaaatattagaaaacaacctaaatgtacatcagtatggaaatgtttacataaattatagcccagctttataacggaatagaaataaaaaagaatcagggagttccttatttacgaatggaaaatatggccaagatatgttgttatgtgaagaaagaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30817538 160 + 172585720 caaaatattagaaaacaacctaaatgtacatcagtatggaaatgtttaaataaattatagcccagctttataattgaatagaaataaaaaagaatcagggagttcttcatttacaaatggaaaatatgaccaagatacgtggttacgtgaagaaagaaaa---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30107024 160 - 170955103 caaaatattagaaaacaacctaaatgtacatcagtatggaaatgtttaaataaattatagcccagctttataattgaatagaaataaaaaagaatcagggagttcttcatttacaaatggaaaatatgaccaagatacgtggttacgtgaagaaagaaaa---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     355946 160 +   1495729 caaaatattagaaaacaacctaaatgtacatcagtatggaaatgtttaaataaattatagcccagctttataattgaatagaaataaaaaagaatcagggagttcttcatttacaaatggaaaatatgaccaagatacgtggttacgtgaagaaagaaaa---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     455681 160 -    863181 caaaatattagaaaacaacctaaatgtacaccagtatgaaaatgtttaaataaattatagcccagctttataattgaatagaaataaaaaagaatcagggagttcttcatttacaaatggaaaatatgaccaggatacgtggttacgtgaagaaagaaaa---
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29605966 163 -  71996105 caaaatattagaaaacaacctaaatgtacatcagtatggaaatgtttaaataaattatatcccagctttataattgaatagaaataaaaaagaatcagggagttcttcatttacaaatggaaaatatgaccaagatacgtagttacgtgaagaaagaaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     304728 163 -    735854 taaaatattagaaaacaacctaaatgtacatcagtatggaaatgtttaaataaattatatcccagctttataattgaatagaaataaaaaagaatcagggagttcttcatttacaaatggaaaatatgaccaagatacgtggttacgtgaagaaaggaaaaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     244318 160 -   1829203 caaaatattagaaaacaacctaaatgtacatcagtatggaaatgtttaaataaattatagccgagctttataactgaatagaagtaaaaaagaatcagggagttcttcatttacaaatggaaaatatgaccaagatacgtggttacatgaggaaagaaaa---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30437282 162 + 171630274 caaaattttagaaaacaacctaaatgtacatcagtagggaaatatttaaataaattatagcccagctttataattgaatagaaataaaaaagaatcagggacttctttatttacaagt-gaaagtatgcccaagatatgttattatgtgaagaaattaaaaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           248890 162 +    515838 caaaatattagaaaacaacctaaatgtacataagtaggcaaatatttaagtaaattatagaccagctttataactgaatagaaataaaaaagaatcagggacttctttatttacaagt-gaaagtatgccaaagacatgttattatgtgaagaaattaaaaaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     875516 162 -   1771730 caaaatattagaaaacaatctatatgtacatcagtaaggaaatatttaaataaattatagcccacctttataactgaataaaaataaaaaagaatcaaggacttctttatttacaagt-gaaagtatgcccaagatatgttattatgtgaagaaattaaaaaa
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     139604 162 -   1411461 cagaagattgg-aaacaacctaaatggacatcagaggggaaatgtttaaataaattgtagtctagctctaaaactaaatagaaataaaaaagaatcaggaagttctgtacttataggtagaaaatgtcaccaatatatgttgttatatgaaaaaagaaaaaaa
i proCoq1.NW_012149775v1   C 0 I 1140
s otoGar3.GL873550           293293 161 +  18854210 caaaagactag-aaacaacctaaatgtacaacagtagagaaatgtttaaataaattgtagtcagactctaaaactaaatagaaataaaaaagaatccagaagttctctacttacaagtagaaaatgtcaccaaggtattttg-tatgtgaaaaaagacaggaa
i otoGar3.GL873550         C 0 I 5
s dasNov3.JH580105            37232 143 -     45298 caaaagactgg-aaacaccctacat--------gctgggaaatgtttacttaaattatggtccagctctaaaaggaaataa----aagacagaatgaggaag-ccttgattgaca----gaaaatac--ctcatttacattgttgtgtgaacacacacacgat
i dasNov3.JH580105         I 795 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e canFam3.chr35            26323817 1751 +  26524999 I
e aotNan1.NW_018496904v1     371901 5010 -    383796 M

a score=376564.000000
s hg38.chr6_GL000254v2_alt  1460213 40 +   4827813 caaataatgcagaaaaatgcatgtactatgctaccatttg
s panTro5.chr6             30329661 40 + 175400573 caaataatgcagaaaaatgtatgtactatgctaccatttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30564024 40 + 173848474 caaataatgcagaaaaatgtatgtactgtgctaccatttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     271070 40 +   2037526 caaataatgcagaaaaatgcatgtactatgctaccatttg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74938114 40 + 122973662 caaataatgcagaaaaatgcatgtactatgctaccatttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30817698 39 + 172585720 -aaataatgcagaaaaatgcatgtactatgctaccatttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30107184 39 - 170955103 -aaataatgcagaaaaatgcatgtactatgctaccatttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     356106 39 +   1495729 -aaataatgcagaaaaatgcatgtactatgctaccatttg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     455841 39 -    863181 -aaacaatgcagaaaaatgcttgtactatgctaccatttg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29606129 40 -  71996105 caaataatgcagaaaaatgcttgtactatgctaccatttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     304891 40 -    735854 caaataatgcagaaaaatgcatgtactatgctaccatttg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     244478 39 -   1829203 -aaacaatgcagaaaaatgcatgtactatgctaccacttg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30437444 40 + 171630274 caaataatgtagaacaatgcatgtactatgctaccattta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           249052 40 +    515838 caaataatgtagagcaatgcatgtattctgccaccatgta
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     875678 40 -   1771730 caaataatgtagaacaatgcatgtactatgctaccattta
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           293459 26 +  18854210 ccaatgatgcaaa--------------tttttaccatttg
i otoGar3.GL873550         I 5 C 0
s dasNov3.JH580105            37375 38 -     45298 --aatggagcagaataatgcatatgctacgttactatatg
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139766 1140 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I
e aotNan1.NW_018496904v1     371901 5010 -    383796 M

a score=499281.000000
s hg38.chr6_GL000254v2_alt  1460253 49 +   4827813 ggtag-aaaaaaa-atac--ttattttcttgaatatccaaataagttctttct
s panTro5.chr6             30329701 50 + 175400573 ggtag-aaaaaaatatac--ttattttcttgaatatccaaataagttctttct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30564064 50 + 173848474 ggtag-aaaaaaatatac--ttattttcttgaatatccaaataagttctttct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     271110 49 +   2037526 ggtag-aaaaaat-atac--ttattttcttgaatatccaaataagttctttct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74938154 49 + 122973662 ggtag-aaaaaat-gtac--ttattttcttgaatatccaaataagttctttct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30817737 49 + 172585720 gttag-aaaaaat-atac--ttattttcttgaatatccataaaagttctttct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30107223 49 - 170955103 ggtag-aaaaaat-atac--ttattttcttgaatatccataaaagttctttct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     356145 49 +   1495729 ggtag-aaaaaat-atac--ttattttcttgaatatccataaaagttctttct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     455880 49 -    863181 ggtag-aaaaaac-atac--ttactttcttgaatatccatataagttctttct
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29606169 49 -  71996105 ggtag-aaataat-atac--ttattttcttgaatatccatataagttctttct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     304931 49 -    735854 ggtag-aaaaaat-atac--ttattttcttgaatatccataaaagttctttct
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     244517 50 -   1829203 ggtagaaaaaaat-atac--ttattttcttgaatatccatataagttctttct
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30437484 49 + 171630274 ggtag-gaaaAGA-ATAC--CTATTTTTTTGAATATGCATATAAGCTTTTTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           249092 49 +    515838 ggcag-gaaaaaa-atac--ttattttcttgaatatgcatataaactctttct
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     875718 48 -   1771730 ggtag-gaaaa-a-atac--ttattttcttgaatatgcatataagctctttct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     376911 49 -    383796 ggtag-gaaaaaa-atac--ttattttcttgaatatgcatataagctctttct
i aotNan1.NW_018496904v1   M 5010 C 0
s otoGar3.GL873550           293485 49 +  18854210 cataa-aaaattt-agac--ttattttctcgaacatgcacataagctctctct
i otoGar3.GL873550         C 0 I 145
s dasNov3.JH580105            37413 46 -     45298 ---ag-caaaaac-atgtggttatttccttgaacatgcatatagactctct--
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139766 1140 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I

a score=1460244.000000
s hg38.chr6_GL000254v2_alt  1460302 125 +   4827813 ggaaggataagaatttaataactaacaatggttgtctctaaggagagggactgactagccagggaacaggggtggaagagaggcttttctttgtatgacata-----ttacattttgtgaatttttaatt----
s panTro5.chr6             30329751 125 + 175400573 ggaaggataagaatctaataactaacaatgattgtctctaaggagagggactgactagccagggaacaggggtggaagagaggcttttctttgtatgacata-----ttacattttgtgaatttttaatt----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30564114 125 + 173848474 ggaaggataagaatctaataactaacaatgattgtctctaaggagagggactgactagccagggaacaggggtggaagagaggcttttctttgtatgacata-----ttacattttgtgaatttttaatt----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     271159 125 +   2037526 ggaaggataagaatctaataactaacaatggttgtctctaaggagagggactgactagccagggaacaggggtggaagagaggcttttctttgtatgacata-----ttacattttgtgaatttttaatt----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74938203 125 + 122973662 ggaaggataagaatctaataactaacaatggctgtctctaaggagagggactgactagccagggaacaggggtggaagagaggcttttctctgcatgacata-----ttacattttgtgaatttttaatt----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30817786 125 + 172585720 ggaaggataagaatctaataactaacaatgattgtctgtaaggagagggactgactagccagggaacaggggtggaagagaggcttttctttgaacgatata-----ttatattttgtgaatttttaatt----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30107272 123 - 170955103 ggaaggataagaatctaataactaacaatgattgtctgtaaggagagggactgactagccggggaaca--ggtggaagagaggcttttctttgaacgatata-----ttacattttgtgaatttttaatt----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     356194 125 +   1495729 ggaaggataagaatctaataactaacaatgattgtctgtaaggagagggactgactagccggggaacaggggtggaagagaggcttttctttgaacgatata-----ttacattgtgtgaatttttaatt----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     455929 125 -    863181 ggaaggataagaatctaataactaacaatgattgtctctaaggagagggactgactagccggggaacaggggtggaagagaagcttttcttcgaacgatata-----ttacattttgtgaatttttacct----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29606218 125 -  71996105 ggaaggataagaatctaataactaacaatgattgtctgtaaggagagagactgactagccagggaacaggggtggaagagaggcttttctctgaacgatata-----ttacattttgtgaatttttaatt----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     304980 125 -    735854 ggaaggataagaatctaataactaacaatggttgtctgtaaggagagggactgactagccggggaacaggggtggaagagaggcttttctttgaacgatata-----ttacattttgtgaatttttaatt----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     244567 125 -   1829203 ggaaggataagaatctaataactaacaatgattgtctctaaggagagggactgactagccagggaacaggggtggaagagaggcttttctttgaatgatata-----ttacattttgtgaatttttaatt----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30437533 125 + 171630274 GGAAGGATGGGAATCTAATAACTAAAAATGGTTGCCTCTAAGGAGACGGACTGGCTAGCTGAGGAACAGGGGTGGAAAAGAGGCTTTTCTTTATATGATATT-----TTACATTTTGTGAATTTTTAATT----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           249141 125 +    515838 ggaaggatgagaatctaataactaacaatggttgcctctaaggagagggattggctagctgggaaacaggggtggaagagaggcttttctttatatgatata-----ttacattttgtgaatttttaatt----
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     875766 124 -   1771730 ggaaggatgggaatctaataactaaaaatggttgcctctaaagagacggactggctagctgggg-acaggggtggaagagaggcttttctttatacaatata-----ttacattttgtgaatttttaatt----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     376960 125 -    383796 ggaaggatgggaatctaataactaaaaatggttgcctctaaggagatggactggctagctggggaacaggggtggaagagaggattttctttatacaatata-----ttacattttgtgaatttttaatt----
i aotNan1.NW_018496904v1   C 0 C 0
s otoGar3.GL873550           293679 130 +  18854210 ggaaggataagaatctaatatctaacaatgattgcctctaaggagatggactggctggctgaggaacagtggtagaagagaggattttcattgtacagtatactctgttacattttgTAATAttttattt----
i otoGar3.GL873550         I 145 I 242
s dasNov3.JH580105            37459 125 -     45298 ggaatgactggaatctagtaac----atcggcttcctctaaagagaggaactggctggctggtgaataggggtggaagaaagactttccattgtatattatt-----ttacattttgtgggcttttaaaaaact
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139766 1140 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I

a score=2396330.000000
s hg38.chr6_GL000254v2_alt  1460427 264 +   4827813 gtataaatacattaAGTTTTTTTCTTTTTTAGTACTTTTTACATTATG-TTTT-ACAACATTAAATAGTAaatc--aaaaaatggacagagaatgaaatggacatttgcagagcaataaaaccaattaaccaataaatacttgaaaacagtaatcttgaaaatgcacgctcaactcattggctcatgcctgtaattccagcactttgtgaggccaaggcaggcagatttcttgagcataggagttcaagagcagcc-tggacaacatgg
s panTro5.chr6             30329876 264 + 175400573 gtataaatacattaAGTTTTTTTCTTTTTTAGTACTTTTTACATTATG-TTTT-ACAACATTAAATAGTAaatc--aaaaaatggacagagaatgaaatggacatttgcagagcaataaaaccaattaaccaataaatacttgaaaacagtaatcttgaaaatgcacgctcaactcattggctcatgcctgtaattccagcactttgtgaggccaaggcaggcagatttcttgagcataggagttcaagagcagcc-tggacaacatgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30564239 263 + 173848474 gtataaatacattaAG-TTTTTTCTTTTTTAGTACTTTTTACATTATG-TTTT-ACAACATTAAATAGTAaatc--aaaaaatggacagagaatgaaatggacatttgcagagcaataaaaccaattaaccaataaatacttgaaaacagtaatcttgaaaatgcacgctcaactcattggctcatgcctgtaattccagcactttgtgaggccaaggcaggcagatttcttgagcataggagctcaagagcagcc-tggacaacatgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     271284 263 +   2037526 gtataaatacattaAGTTTTTTTCTTTTTTAGTACTTTTTACATTATG-TTTT-ACAACATTAAATAGTAAATC--AAAAAATAGACAGAGAATGAAATGGACATTTGCAGAGCAAT-AAACCAATTAACCAATAAATACTTGAAAACAGTAATCTTGAAAATGCACGCTCAACTCATtggctcatgcctgtaattccagcactttgtgaggccaaggcaggcagatttcttgagcataggagttcaagagcagcc-tggacaacatgg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74938328 265 + 122973662 gcataaatacattaAGTTTTTTTCTTTTTTAGTACTTTTTACATTATGATTTT-ACAACATTAAATAGTAAATC--AAAAAATGGACAGAGAATGAAATGGGCATTTGCAGAGCAATAAAACCAATTAACCAATAAATACCTGAAAACAGTAATCTTGAAAATGCACGCTGAACTCATCggctcatgcctgtaattccagcactctgtgaggccaagacaggcagacttcttgagcgtaggagttcaagagcagcc-tggacaacatgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30817911 260 + 172585720 gtataaatacattG-TTTTTTTCTTTTTTTAATGCTTTTTACATTATG-TTTT-----TATTAAATAGTAAATC-aaaaaaatgaacagagaatgaaatggaaatttgcaaagcaataaaaccaattaaccaataagtatatgaaaacagcaatcttgaaaatgcacgctgagctcattggctcgtgcctataatcccagcactttgtgaggccaaggcaggcagatttcttgagggcaggagttcaagagcaacc-tggacaacatgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30107395 260 - 170955103 gtataaatacattG-TTTTTTTCTTTTTTTAATGCTTTTTACATTATG-TTTT-----TATTAAATAGTAAATC-aaaaaaatgaacagagaatgaaatggaaatttgcaaagcaataaaaccaattaaccaataagtatatgaaaacagcaatcttgaaaatgcacgctgagctcattggctcgtgcctataatcccagcactttgtgaggccaaggcaggcagatttcttgagggcaggagttcaagagcaacc-tggacaacatgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     356319 260 +   1495729 gtataaatacattG-TTTTTTTCTTTTTTTAATGCTTTTTACATTATG-TTTT-----TATTAAATAGTAAATC-aaaaaaatgaacagagaatgaaatggaaatttgcaaagcaataaaaccaattaaccaataagtatatgaaaacagcaatcttgaaaatgcacgctgagctcattggctcgtgcctataatcccagcactttgtgaggccaaggcaggcagatttcttgagggcaggagttcaagagcaacc-tggacaacatgg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     456054 259 -    863181 gtataaatacattG-TTTTTTTCTTTTTTTAGTACTTTTTACGTTATG-TTTT-----TATTAAATAGTAAATC-aaaaaaatgtacagagaatgaaatggaaatttgcaaggcaataaaaccaattaaccaataagtatatg-aaacagcaatcttgaaaatgcacgctgagctcattggcttgtgcctataatcccagcactttgtgaggccaaggcaggcagatttcttgagggcaggagttcaagagcaacc-tggacaacatgg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29606343 261 -  71996105 gtataaatacatta-ttttttTCTTTTTTTAATGCTTTTTACATTATG-GTTT-----TATTAAATAGTAAATCAaaaaaaatgaacagagaatgaaatggaaatttgcaaagcaataaaaccaattaaccactaagtatatgaaaacagcaatcttgaaaatgcacgctgagctcattggctcgtgcctataatcccagcaatttgtgaggccaaggcaggcagatttcttgagggcaggagttcaagagcagcc-tgaacaacatgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     305105 258 -    735854 gtataaatacattG-TTTTTTTCTTTTTTTAATGCTTTTTACATTGT---TTT-----TATTAAATAGTAAATC-AAAAAAATGAACAGAGAATGAAATGGAAATTTGCAAAGCAATAAAACCAATTAACCAATAAGTATATGAAAACAGCAATCTTGAAAATGCACgctgagctcattggctcgtgcctataatcccagcactttgtgaggccaaggcaggcagatttcttgagggcaggagttcaagagcaacc-tggacaacatgg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     244692 259 -   1829203 gtataaatacattg--ttttttcTTTTTTTAGTACTTTTTACATTATG-TTTT-----TATTAAATCGTAAATT-TAaaaaatggacagagaatgaaatggaaatttgcaaagcaataaaatcaattaaccaataagtatatgaaaacagcaatcttgaaaatgcacgctgagctcattggctcgtgcctataatcccagcactttgtgaggccaaggcaggcagatttcttgagtgcaggagttcaagagcagcc-tggacaacatgg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30437658 258 + 171630274 GTATAGAAACATTC-------AGTGTTTTTAGTATTTTTTACATTATG-TTTTTACAACATTAAATAATAaatc--aaaaaatggacagagaatgatatggaaatttacagagcaataaaaccaattgaccaataaatatacgaaaacagtgatcttgaaaatgcatgctgaacacattagctcatgcctgtaattctggcactttgtgagaccaagacaagcagatttcttgagcccaggagttcaagagcagcc-tgggcaacatgg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           249266 258 +    515838 gtgtaaatacatta-------AGTTCTTTTAGTATTTTTTACATTATG-TTTTTACAACATTAAATAATAaata--aaaaaatggacagagaatgaaatggaaatttacagagcaataaaaccaattaaccaataaatatatgaaaacagtagtcctgaaaatgcttgctgagcacattggctcatgcctgtaattccagcactttgtgagaccaaggcaagcagatttcttgagcccaagagttcaagagcagcc-tgggcaacatgg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     875890 253 -   1771730 gtataaatacattg------------ttttagtattttttacattatg-tttttacaacattaaataataaatc--aaaaaatggacagagaatgaaaTGGAAATTTACAGAGCAATAAAACCAATTGACCAATAAATATATGATAACAGTAATCTTGAAAATGCACGCTGAACACATtggctcatgcctataattccagcagtttgtgaggtcaaggcaagcagatttcttgagcccgggagttcaagagcagcc-tgggcaacatgg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     377085 257 -    383796 gtataaatacatta--------ATTTTTTTAGTATTTTTTACATTATG-TTTGTACAACATTAAATAATAAATC--AAAAAATGGACAGAGAATGAGGTGGAAATTTACAGAGCAATAAAACCAATTGACCAATAAATACATGAAAACAGTAATCTTGAAAATGCGTGCTGAACACATtgactcatgcctgtaattccagcactttgtgagaccaaggcaagcagatttcttgagcccaggagttcaagagcagcc-tgggcaacatga
i aotNan1.NW_018496904v1   C 0 C 0
s dasNov3.JH580105            37584 197 -     45298 aggtaaata--------------------taatacttttaaaaaaatg---------aaATTAAATAACAAACC--AAAAAAAATTGGTAGTTTGAACTGGAAATCCACTGAGCATGAAAACCAATTGACCGcta--tatatgaaaacagtaatca-gggaatgcaaattaaaaagat--------------------aacatttggtg------------gcagactt----ggcccaggggtt--agggcgtccgtctaccacatgg
i dasNov3.JH580105         C 0 I 110
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139766 1140 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I

a score=686823.000000
s hg38.chr6_GL000254v2_alt  1460691 73 +   4827813 tgaaaccctgtctctacaaaaaatacaaaagttagctgggcatggtggcacacacctata-gtcccagcttctt
s panTro5.chr6             30330140 73 + 175400573 tgaaaccctgtctctacaaaaaatacaaaagttagctgggcatggtggcacgcacctata-gtcccagcttctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30564502 73 + 173848474 tgaaaccctgtctctacaaaaaatacaaaagttagctgggcatggtggcacgcacctata-gtcccagcttctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     271547 73 +   2037526 tgaaaccctgtctctacaaaaaatacaaaagttagctgggcatggtggcacgcacctata-gtcccagcttctt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74938593 73 + 122973662 tgaaaccctgtctctacaaaaaatacaaaagttagctgggcatggtggcacgcacctata-gtcccagcttctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30818171 72 + 172585720 tgaaa-cctgtctctacaaaaaatacaaaagttagccaggcatggtggcacgcacccaca-gtcccagctactt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30107655 72 - 170955103 tgaaa-cctgtctctacaaaaaatacaaaagttagccaggcatggtggcacgcacccaca-gtcccagctactt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     356579 73 +   1495729 tgaaaccctgtctctacaaaaaatacaaaagttagccaggcatggtggcacgcacccaca-gtcccagctactt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     456313 73 -    863181 tgaaaccctgtctctacaaaaaatacaaaagttagccaggcatggtggcacgcacccaca-gtcccagctactt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29606604 73 -  71996105 tgaaactctgtctttacaaaaaatacaaaagttagccaggcatggtggcacacacccaca-gtcccagctactt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     305363 73 -    735854 tgaaaccctgtctctacaaaaaatacaaaagttagccaggcatggtggcacgcacccaca-gtcccagctactt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     244951 73 -   1829203 tgaaaccctgtctctacaaaaaatacaaaagttagccaggcatggtggcacgcacctaca-gtcccagctactt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30437916 74 + 171630274 caaaaccctgtctctacaaaaaatacagaagttacccaggcatagtggcgtgcacctatatttcccagctgctt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           249524 74 +    515838 caaaaccctgtctctacaaaaaatacaaaagttacccaggcatagtggcacacacctgtatttcccagctactt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     876143 74 -   1771730 caaaaccttgtttctacaaaaaatacaaaagttacccagtcatagtggcacacacatatatttcccagctactt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     377342 74 -    383796 caaaaccttgtctctacaaaaaatacaaaagttacccaggcatagtggcacgcacctatatttcccagctactt
i aotNan1.NW_018496904v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH580105            37781 110 -     45298 I
e proCoq1.NW_012149775v1     139766 1140 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I

a score=292488.000000
s hg38.chr6_GL000254v2_alt  1460764 30 +   4827813 ggaaggctgatgcaggaggattgcat---------gaac----
s panTro5.chr6             30330213 30 + 175400573 ggaaggctgatgcaggaggattgcat---------gaac----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30564575 30 + 173848474 ggaaggctgatgcaggaggattgcat---------gaac----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     271620 30 +   2037526 ggaaggctgatgcaggaggattgcat---------gaac----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74938666 30 + 122973662 ggaaggctgatgcaggaggattgcat---------gaac----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30818243 30 + 172585720 ggaaggctgatgcaggaggattgggt---------gagc----
i rheMac8.chr4             C 0 I 7
s macFas5.chr4             30107727 30 - 170955103 ggaaggctgatgcaggaggattgggt---------gagc----
i macFas5.chr4             C 0 I 7
s macNem1.NW_012012100v1     356652 30 +   1495729 ggaaggctgatgcaggaggattgggt---------gagc----
i macNem1.NW_012012100v1   C 0 I 7
s cerAty1.NW_012002535v1     456386 30 -    863181 ggaagactgatgcaggaggattgggt---------gagc----
i cerAty1.NW_012002535v1   C 0 I 7
s chlSab2.chr17            29606677 30 -  71996105 ggaaggctgatgcaggaggattgggt---------gagc----
i chlSab2.chr17            C 0 I 12
s manLeu1.NW_012107142v1     305436 30 -    735854 ggaaggctgatgcaagaggattgggt---------gagc----
i manLeu1.NW_012107142v1   C 0 I 7
s colAng1.NW_012115577v1     245024 30 -   1829203 ggaaggctgatgcaggaggattgcgt---------gagc----
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30437990 30 + 171630274 ggaaggttgatgcaggagggttgctt---------gagc----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           249598 30 +    515838 ggaaggttgatgcaggagggttgctt---------gagc----
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     876217 30 -   1771730 ggaaggttgatgcaggagggttgctt---------gagc----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     377416 30 -    383796 ggaaggttgatgcaggagggttgctt---------gagc----
i aotNan1.NW_018496904v1   C 0 C 0
s dasNov3.JH580105            37891 43 -     45298 gggagccccatgcgcaaggagtgtgcccgtaaggagagccgcc
i dasNov3.JH580105         I 110 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139766 1140 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I

a score=-14641.000000
s hg38.chr6_GL000254v2_alt  1460794 10 +   4827813 --ctgcgagatc
s panTro5.chr6             30330243 10 + 175400573 --ctgcgagatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30564605 10 + 173848474 --ctgcgagatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     271650 10 +   2037526 --ctgggagatc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74938696 10 + 122973662 --ctgggagatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30818280  5 + 172585720 -------atgcc
i rheMac8.chr4             I 7 C 0
s macFas5.chr4             30107764  5 - 170955103 -------atgcc
i macFas5.chr4             I 7 C 0
s macNem1.NW_012012100v1     356689  5 +   1495729 -------atgcc
i macNem1.NW_012012100v1   I 7 C 0
s cerAty1.NW_012002535v1     456423  5 -    863181 -------atgcc
i cerAty1.NW_012002535v1   I 7 C 0
s manLeu1.NW_012107142v1     305473  5 -    735854 -------atgcc
i manLeu1.NW_012107142v1   I 7 C 0
s colAng1.NW_012115577v1     245055  5 -   1829203 -------gtgat
i colAng1.NW_012115577v1   I 1 I 6
s calJac3.chr4             30438020 10 + 171630274 --ctgggaggtc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           249628  7 +    515838 --ctgggag---
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     876247 10 -   1771730 --ctgggaggtc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     377446 10 -    383796 --ctgggaagtc
i aotNan1.NW_018496904v1   C 0 C 0
s dasNov3.JH580105            37934 10 -     45298 cagcgtgaaa--
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139766 1140 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I
e chlSab2.chr17            29606707 12 -  71996105 I

a score=732801.000000
s hg38.chr6_GL000254v2_alt  1460804  93 +   4827813 gaggctgcagtgagcc--gtgatcatgccactgcactt---tagccgccctactgcactccagcttgggtaacagagcaagac----------------gttt-ccttaaaaaaa
s panTro5.chr6             30330253  93 + 175400573 gaggctgcagtgagcc--gtgatcatgccactgcactt---tagccgccctactgcactccagcttgggtaacagagcaagac----------------gttt-ccttaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30564615  94 + 173848474 gaggctgcagtgagcc--gtgatcatgccactgcactt---tagccgccctactgcactccagcttgggtaacagagcaagac----------------gtttaccttaaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     271660  93 +   2037526 gaggctgcagtgagcc--gtgatcatgccactgcactt---tagccgccctactgcactccagcttgggtaacagagcaagac----------------gttt-ccttaaaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74938706  93 + 122973662 gaggctgcaatgagcc--atgatcatgccactgcactt---tagccgccctactgcactccagcttgggtaagagagtgagac----------------cttt-tctaaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30818285  93 + 172585720 gggtctgcagtgagcc--gtgatcatgccactgcactt---tagccgccctactgcactccagcttgggtaacagaggaagac----------------cttt-tctaaaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30107769  87 - 170955103 gggtctgcagtgagcc--gtgatcatgccactgcactt---tagccgccctactgcactccagcttgggtaacagaggaagac----------------cttt-tctaa------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     356694  92 +   1495729 gggtctgcagtgagcc--gtgatcatgccactgcactt---gagccgccctactgcactccagcttgggtaacagaggaagac----------------cttt-tctaa-aaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     456428  87 -    863181 gggtctgcagtgagcc--gtgatcatgccactgcactt---tagccgccctactgcactccagcttgggtaacaggggaagac----------------cttt-tctaa------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29606719  85 -  71996105 gggtctacagtgagcc--gtgatcatgccactgcactt---tagccgccctactgcactccagtttgagtaacagaggaagac----------------cttt-tct--------
i chlSab2.chr17            I 12 C 0
s manLeu1.NW_012107142v1     305478  93 -    735854 gggtctgcagtgagcc--gtgatcatgccactgcactt---tagccgccctactgcactccagcttgggtaacagagcaagac----------------cttt-tcttaaaaaaa
i manLeu1.NW_012107142v1   C 0 I 1325
s colAng1.NW_012115577v1     245066  87 -   1829203 cggtctgcagtgagcc--atgatcatgccactgcactt---tagccgccctactgcactccagcttgagtaacagagcaagaa----------------cttt-tctaa------
i colAng1.NW_012115577v1   I 6 C 0
s calJac3.chr4             30438030  93 + 171630274 aaggctgcagtgagcc--gtgattgtgccaatgcactt---tagctgccttactgcactccagcctgggtaacaaagcaagaa----------------cttg-tctcaaaaaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           249635  72 +    515838 ------------------gtgactgcgccaatgca-tt---tagcc-ccttacagcactccagcctgggtaacaaagcaagac----------------cttg-tctcaaaa---
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     876257  92 -   1771730 agggctgcagtgagcc--gtgactgtgccaatgcactt---tagcc-ccttactgcactccagcctgggtaacaaagcaaggc----------------cttg-tctcaaaaaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496904v1     377456  92 -    383796 agggctgcagtgagcc--gtgattgtaccaatgcactt---tagcc-ccttactgcactccagcctgagtaacaaagcaagac----------------tttg-tctcaaaaaaa
i aotNan1.NW_018496904v1   C 0 C 0
s dasNov3.JH580105            37944 104 -     45298 gaaagtgcagcctgcccaggaatggtgccac-acacacggagagctg---------acacaagatgatgcaacagaaagaaacacagattcccgtgccgctga-tgacaagagaa
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139766 1140 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I

a score=-32224.000000
s hg38.chr6_GL000254v2_alt  1460897  8 +   4827813 aaaaaa-------------------------------------aa
s panTro5.chr6             30330346 15 + 175400573 aaaaaa------------------------------aaaaaagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30564709 12 + 173848474 aaaaag---------------------------------aaagaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     271753 45 +   2037526 aaagaaagaaagaaagaagaaagaaagaaagaaagaaagaaagaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74938799 36 + 122973662 aaaaaa---------aaagaaaaagaaagaaagagagagagagaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30818378  4 + 172585720 -----------------------------------------aaaa
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     356786  4 +   1495729 -----------------------------------------aaaa
i macNem1.NW_012012100v1   C 0 C 0
s colAng1.NW_012115577v1     245153  4 -   1829203 -----------------------------------------aaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30438123  1 + 171630274 -------------------------------------a-------
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     876349  8 -   1771730 -------------------------------------aaaaaaaa
i cebCap1.NW_016107755v1   C 0 I 2451
s aotNan1.NW_018496904v1     377548  8 -    383796 -------------------------------------aaaaaaag
i aotNan1.NW_018496904v1   C 0 C 0
s dasNov3.JH580105            38048  8 -     45298 -------------------------------------gcggacaa
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139766 1140 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I
e saiBol1.JH378341           249707  0 +    515838 C
e otoGar3.GL873550           293809 242 +  18854210 I
e manLeu1.NW_012107142v1     305571 1325 -    735854 I
e chlSab2.chr17            29606804  0 -  71996105 C
e cerAty1.NW_012002535v1     456515  0 -    863181 C
e macFas5.chr4             30107856  0 - 170955103 C

a score=28686.000000
s hg38.chr6_GL000254v2_alt  1460905 22 +   4827813 ----------agaaagaaagaaagaaaaagaa
s panTro5.chr6             30330361 22 + 175400573 ----------agaaagaaagaaagaaaaagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30564721 22 + 173848474 ----------agaaagaaagaaagaaaaagaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     271798 22 +   2037526 ----------agaaagaaagaaagaaaaagaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74938835 22 + 122973662 ----------agaaagaaagaaagaaagagaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30818382 19 + 172585720 ----------aaaaaaaaaaaaagaaaag---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30107856 10 - 170955103 -------------------aaaagaaaag---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     356790 19 +   1495729 ----------aaaaaaaagaaaagaaaag---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     456515 19 -    863181 ----------aaaaaaaaagaaaagaaag---
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29606804 10 -  71996105 -------------------aaaaaaaaag---
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     245157 19 -   1829203 ----------aaaaagaaaggaagaaaag---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30438124 16 + 171630274 ------------agaaaaagaaaaagaa----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           249707 14 +    515838 --------------aaaaagaaaaagga----
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     377556 14 -    383796 --------------aaaaagaaaagaaa----
i aotNan1.NW_018496904v1   C 0 C 0
s dasNov3.JH580105            38056 28 -     45298 agaaggcgcagcaaatagacacagagaa----
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139766 1140 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I
e cebCap1.NW_016107755v1     876357 2451 -   1771730 I
e manLeu1.NW_012107142v1     305571 1325 -    735854 I

a score=3834473.000000
s hg38.chr6_GL000254v2_alt  1460927 441 +   4827813 a------------------------------aaagaaaatgccaatta----aa---ataaaagaagatatcagtttatatcttaag-tttaagtct-ggaatatcaaatatagccaaggacatggagaaataggtactcctataccctactggtgagagtataaattacaataat-----ttaaaaatatttagtagaatttaaaCGGTGTACTTTCATTTCAAGGTTCTGTAatgataatgatgatgatgaAAATACTGCTACCAGTA-----aataaaagctaacatttcttgaatgcttaccatgtgccaggcacagtcccaagcattttg--cgtattaact--catttatatagagaagtattattattcccattttgaggacaagtcaacggagatcaagagagattaagcaatttgccccaaaggtcattcagtaagtaaatagtggaatggggacttgaacccaggtagcctctagagccttctt
s panTro5.chr6             30330383 441 + 175400573 a------------------------------aaagaaaatgccaatta----aa---ataaaagaagatatcattttatatcttaag-tttaagtct-ggaatatcaaatatagccaaggacatggagaaataggtactcctataccctactggtgagagtataaattacaataat-----ttaaaaatatttagtagaatttaaaCGGTGTACTTTCATTTCAAGGTTCTGTAACGATAATGATGATGATGAAAATACTACTACCAGTA-----aataaaagctaacatttcttgaatgcttaccatgtgccaggcacagtcccaagcattttg--cgtattaact--catttatatagagaagtattattattcccattttgaggacaagtcaaccgagatcaagagagattaagtaatttgtcccaaaggtcattcagtaagtaaatagtggaatggggacttgaacccaggtagcctctagagccttctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30564743 441 + 173848474 a------------------------------aaagaaaatgccaatta----aa---ataaaagaagatatcattttatatcttaag-tttaagtct-ggaatatcaaatatagccaaggacatggagaaataggtactcctataccctactggtgagagtataaattacaataat-----ttaaaaatatttagtagaatttaaaCGGTGTACTTTCATTTCAAGGTTCTGTAACGATAATGATGATGATGAAAATACTACTACCAGTA-----aataaaagctaacatttcttgaatgcttaccatgtgccaggcacagtcccaagcattttg--catattaact--catttatatagagaagtattattattcccattttgaggacaagtcaacggagatcaagagagattaagtaatttgtcccaaaggtcattcagtaagtaaatagtggaatggggacttgaacccaggtagcctctagagccttctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     271820 441 +   2037526 a------------------------------aaagaaaATGCCAATTA----AA---ATAAAAGAAGATGTCATTTTATATCTTAAG-TTTAAGTCT-GGAATATCAAATATAGCCAAGGACATGGAGAAATAGGTACTCCTATACCCTACTGGTGAGAGTATAAATTACAATAAT-----TTAAAAATATTTAGTAGAATTTAAACGGTGTACTTTCATTTCAAGGTTCTGTAACGATAATGACGATGATGAAAATACTACTACCAGTA-----aataaaagctaacatttcttgaatgcttaccatgtgccaggcacagtcccaagcattttg--cgtattaact--catttatatagagaagtattattattcccattttgaggacaagtcaacggagatcaagagagattaagtaatttgtcccaaaggtcattcagtaagtaaatagtggaatggggacttgaacgcaggtagcctctagagccttctt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74938857 441 + 122973662 a------------------------------aaagaaaatgccaatta----aa---ataaaagaagatatcattttatatcttaag-tttaagtct-ggaatatcaaatataaccaaggacatggagaaataggtactcctataccctactggtgagagtataaattacagtaac-----ttaaaaatatttagtagaatttaaATGGTGTACTTTCATTTCAAGGTTGTGTAatgataatgatgatgatgaAAATACTACTACGAGTA-----aataaaagctaacatttcttgaatgcttaccatgtgccaggcacagtcccaagcattttg--catattaact--catttatatagggaagtattattattcccattttgaggacaagtcaatggagatcaagagagattaagtaatttgccccaaaggtcattcagtaagtaaatagtggaatgggggcttgaacccaggtagcctctagagccttctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30818401 435 + 172585720 a------------------------------aaagaaaaggccaatta----aa---gtaaaataagataccattttatatc-------ttaagtct-ggaatatcaaatatagccaaggacatagagaaataggtactcctataccctactggtgatagcataaattACAGTAAT-----TTAAAAATATTTAGTAGAATTTAAACGGTGTACTTTCATTTCAAGGTTATGTAatgataatgatgatgatgaAAATACGACTACCAGCA-----aataaaagttaaaatttcttgaatgcttactatgtgccaggcacagtcccaagcattttg--catattaact--catgtatataaggaagtattattattcccattttgaggacaagtcaatggaggtcaagagaaattaagtaatttgccccaaaggtcattcagcaagtaaatagtggaatggggacttgaacccaggtagcctctagagccttctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30107866 435 - 170955103 a------------------------------aaagaaaaggccaatta----aa---gtaaaataagatatcattttatatc-------ttaagtct-ggaatatcaaatatagccaaggacatagagaaataggtactcctataccctactggtgatagtataaattacagtaat-----ttaaaaatatttagtagaatttaaaCGGTGTACTTTCATTTCAAGGTTATGTAatgataatgatgatgatgaAAATACGACTACCAGCA-----aataaaagttaaaatttcttgaatgcttaccatgtgccaggcacagtcccaagcattttg--catattaact--catttatatagggaagtattattattcccattttgaggacaagtcaatggaggtcaagagaaattaagtaatttgccccaaaggtcattcagcaagtaaatagtggaatggggacttgaacccaggtagcctctagagccttctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     356809 435 +   1495729 a------------------------------aaagaaaaggccaatta----aa---gtaaaataagataccattttatatc-------ttaagtct-ggaatatcaaatatagccaaggacatagagaaataggtactcctataccctactggtgatagtataaattACAGTAAT-----TTAAAAATATTTAGTAGAATTTAAACGGTGTACTTTCATTTCAAGGTTATGTAatgataatgatgatgatgaAAATACGACTACCAGCA-----aataaaagttaaaatttcttgaatgcttactatgtgccaggcacagtcccaagcattttg--catattaact--catgtatataaggaagtattattattcccattttgaggacaagtcaatggaggtcaagagaaattaagtaatttgccccaaaggtcattcagcaagtaaatggtggaatggggacttgaacccaggtagcctctagagccTTCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     456534 435 -    863181 a------------------------------aaagaaaaggccaatta----aa---ataaaataagatatcattttatatc-------ttaattct-ggaatatcaaatatagccaaggacatggagaaatagatactcctataccctactggtgagagtataaattacagtaat-----ttAAAAATATTTAGTAGAATTTAAATGGTGTACTTTCATTTCAAGGTTATGTAatgataatgatgatgatgaAAATACGACTACCAGTA-----aataaatgttaaaatttcttgaatgcttaccatgtgccgggcacagtcccaagcattttg--catattaact--catttatatagggaagtattattattcccattttgaggacaagtcaatggaggtcaagagagattaagtaatttgccccaaaggtcatgcagcaagtaaatagtggaatggggacttgaacccaggtagcctctagagccttctt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29606814 434 -  71996105 a------------------------------aaagaaaaggccaatta----aa---ataaaataggatatcattttatatc-------ttaagtct-ggaatatcaaatagagccaaggacatagagaaataggtactcctataccctactggtgagagtataaattacag-aat-----ttaaaaatatttagtagaatttaaaCAGTGTACTTTCATTTCAAGGTTATGTAATGATAATGTTGATGATGAAAATACGACTACCAGTA-----aataaaagttaaaatttcttgaatgcttaccatgtgccaggcacagtcccaagcatttcg--catattaact--catttatatagggaagtattattattcccgttttgaggacaagtcaatggaggtcaagagagtttaagtaatttgccccaaaggtcattcagcaagtaaatagtggactggagacttgaacccaggtagcctctagagccttctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     306896 429 -    735854 a------------------------------aaagaaaaggccaatta----aa---ataaaataagatatcattt--taac-------ttaagtct-ggaatatcaaatatagccaaggacatggagaaataggtactcctataccctactggcgagagtataaattacagtaat-----ttaaaaa----tagtAGAATTTAAACGGTGTACTTTCATTTCAAGGTTATGTAATGATAATAATGATGATGAAAATATGACTACCAGTA-----aataaaagctaaaatttcttgaatgtttaccatgtgccaggcacagtcccaagcattttg--catattaact--catttatatagggaagtattattattcccattttgaggacaagccaatggaggtcaagagagattaagtaatttgccccaaaggtcatgcagcaagtaaatagtggaatggggacttgaacccaggtagcttctagagccTTCTT
i manLeu1.NW_012107142v1   I 1325 C 0
s colAng1.NW_012115577v1     245176 435 -   1829203 a------------------------------aaaggaaatgccaatta----aa---ataaaagaagatatcattttatatc-------ttaagtca-ggaatatcaaatatagccaaggacatggagaaataggtactcctataccctactggtgagagtataaattacagtaac-----ttaaaaatatttagtaGAATTTAAATGGTGTACTTTCATTTCAAGGTTACATAACGATAATGATGATGATGAAAATACGACTACCAGTA-----aataaaagctaacatttcttcaatgcttaccatgtgccaggcacagtcccaggcattttg--catattaact--catttatatagggaagtattattattcccattttgaggacaagtcagtggaggtcaagagagattaagtaatttgccccaaaggtcattcagcaagtaaatagtggaatggggacttgagcccaggtaacctctagagccTTctt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30438140 435 + 171630274 a----------------------------------aaaatgcaaatta----aa---ataaaagaagatatcattttgtatcttaag-attaagtct-ggaatatcaaatatagccaaaaatatggagaaatggggactcttataccctactggtgggagtataaattacagtaat-----ttaaaaatatttaatagaatttaAACAGTGTGCTTTCATTTTAAGGTTATGTAATGATAATATTGATTATGAAAATACTGCTACCTCTA-----aataaaagctaacatttcttgaatgcttaccgtgtgccaggcatagtcccaagcattttg--caaattagct--cacatatatagggaagtattattattcccattttgaggacaagtcaactgaggtcaagagagatgaagtaatttgccc--aaggtcattcaggaagtaaatagtggaatggggacttgagcccagagagcctctagagccttctt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           249721 431 +    515838 a----------------------------------aaaatgcaaatta----aa---ataaaagaagataccattttgtatc-------ttaagtct-ggaataccaaatatagccaacagaatggagaaatggggactcttataccctactggtgagagtataaattacaataat-----ttAAAAATATTTAGTAGAATTTAAACAGTGTACTTTCATTTTAAGGTTATGTAATGATAATGTTAATGATGAAAATACTGCTACCTCTA-----aataaaagctagcattttgtgaatgcttaccatgtgccaggcatggtctcaagcattttg--caaattagcttatatatatatagggaagtattattattcctattttgaggaccagtctactgaggtcaagagagattaagtaatttgctc--aaggtcattcagtaagtaaatagtggaatggggacctgaacccagagaggctctggagccTTCTT
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496904v1     377570 469 -    383796 aGAaagaa----aggaaggaaggaaggaaggaagggaaatgcaaattaaaataa---ataaaagagaatatcattttatatctcaag-tttaagtct-ggaatatcaaatatagccacaaatatggagaaatggggactcctataccctactggtgagagtataaattACAGTGAT-----GTAAAAATATTTAGTAGAATTTAAATGGTGTACTTTCATTTTAAGGTTATGTAATGATAATGTTGATGATGAAAATACTGCTACCTCTA-----aataaaagctaacatttcatgaatgcttaccatgtgccaggcatagtcccaagcattttg--caaattagct--catatatatagggaagtattattattcccattttgaggaccaatcaactgaggtcaagagagattaagtaatttgccc--aagttcattcaataagtaaatagtggaatgggaacttgaaaccagagagcctctagagccTTCTT
i aotNan1.NW_018496904v1   C 0 N 0
s dasNov3.JH580105            38084 463 -     45298 -cagacaaccggggtggggggggggggaggggagggaaata--aatta----aAAAGAAAAAAAAAGATAACATTTGATACCTCAATCCAAAAGCCTAGGAGTATCAGATTTACTCAAGTACAT-GTGAAATGGG-GTTCTTACACCCTGTT-TTGGGAGTACAAATGAAAATAAGAGCGATTTATTATACTTGGTAGAATAGAAAATGTGTACTTTCATTCCAGGGTTGTATAATAATGGTGAAAATAAGGGAAATACTGCTGCTGCTAGTACCACtaagaggccacactt----gatgggtaccatgtgcccggcacggtc-caagcgttttgctcatcttagct--ccctga-acggggaagtattatta-tcctattttgaggacacgccagct--ggtcgagagcacttaagtaacttgccc--aagctc-cccaggaagtaaacggtg----gggggtctcgccccaggGGACCCC---AGCCTTCCG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139766 1140 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I
e cebCap1.NW_016107755v1     876357 2451 -   1771730 I

a score=524409.000000
s hg38.chr6_GL000254v2_alt  1461368 63 +   4827813 --acaccctgtatgattctgccTctctagagaaaaccttgcacatgtgcactcagagatgcatgt
s panTro5.chr6             30330824 63 + 175400573 --acaccctgtatgattctgCCCctctagagaaaaccttgcacatgtgcactcagagatgcatgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30565184 63 + 173848474 --acaccctgtatgattctgcccctctagagaaaaccttgcacatgtgcactcagagatgcatgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     272261 63 +   2037526 --acaccctgtatgattctgCCCctctagagaaaaccttgcacatgtgcactcagagatgcatgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74939298 63 + 122973662 --acaccctgtatgattctgCCCctctagagaaaaccttgcacatgtgcactcagagatgcatgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30818836 63 + 172585720 --acgccctgtgtgatTCGGCCCctctagagaaaactttgcacatgtgcactcagagatgcatgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30108301 63 - 170955103 --acgccctgtgtgatTCGGCCCctctagagaaaactttgcacatgtgcactcagagatgcatgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     357244 63 +   1495729 --ACGCCCTGTGTGATTCGGCCCctctagagaaaactttgcacatgtgcactcagagatgcatgt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     456969 63 -    863181 --acaccctgtgtgatTCGGCCCctctagagaaaactttgcacatgtgcactcagagatgcatgt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29607248 63 -  71996105 --acaccctgtgtgatTCAGCCCctctagagaaaactttgcacatgtgcactcagagatgcatgt
i chlSab2.chr17            C 0 I 44
s manLeu1.NW_012107142v1     307325 63 -    735854 --ACACCCTGTGTGATTCGGCCCctctagagaaaactttgcacatgtgcactcagagatgcatgt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     245611 63 -   1829203 --acacccagtatgattctgcccctctagagaaaactttgcacatgtgcactcagagatgcatgt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30438575 63 + 171630274 --aCATTCTGTATGATTCTGCCTCAAtagagaaaatcttgcatatgtgcactcagagatgcatgt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           250152 63 +    515838 --ACACCCTGTATGATTCTGCCCCAAtagagaaaatcttgcatatgcgcactcagagatacatgt
i saiBol1.JH378341         C 0 C 0
s dasNov3.JH580105            38547 64 -     45298 AGGCAGCCTGTA-GAGTCTGCCCGTCTGGAGATGATCTCTCATGTGTGCGCTCAGAGATGTGTAG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139766 1140 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I
e cebCap1.NW_016107755v1     876357 2451 -   1771730 I

a score=69483.000000
s hg38.chr6_GL000254v2_alt  1461431 11 +   4827813 aacagtattaa
s panTro5.chr6             30330887 11 + 175400573 aacagtattaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30565247 11 + 173848474 aacagtattaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     272324 11 +   2037526 aacagtattaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74939361 11 + 122973662 aacagtattaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30818899 11 + 172585720 aacagtgttaa
i rheMac8.chr4             C 0 I 31
s macFas5.chr4             30108364 11 - 170955103 aacagtgttaa
i macFas5.chr4             C 0 I 18
s macNem1.NW_012012100v1     357307 11 +   1495729 aacagtgttaa
i macNem1.NW_012012100v1   C 0 I 31
s cerAty1.NW_012002535v1     457032 11 -    863181 aacagtgttaa
i cerAty1.NW_012002535v1   C 0 I 31
s manLeu1.NW_012107142v1     307388 11 -    735854 aacagtgttaa
i manLeu1.NW_012107142v1   C 0 I 31
s colAng1.NW_012115577v1     245674 11 -   1829203 aacagtgttaa
i colAng1.NW_012115577v1   C 0 I 363
s calJac3.chr4             30438638 11 + 171630274 aacggtgctaa
i calJac3.chr4             C 0 I 18
s saiBol1.JH378341           250215 11 +    515838 aacagtgctaa
i saiBol1.JH378341         C 0 I 18
s dasNov3.JH580105            38611 11 -     45298 GAGGCAATTAG
i dasNov3.JH580105         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139766 1140 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I
e cebCap1.NW_016107755v1     876357 2451 -   1771730 I
e chlSab2.chr17            29607311 44 -  71996105 I

a score=239313.000000
s hg38.chr6_GL000254v2_alt  1461442 278 +   4827813 taTTggctgggtgcggtggctcccgcctgtaatcccagcactttgggaggctgaggcgggcggatcacgaggtcaggagatcaagaccatcctggctaacccggtgaaaccctgtctccactaaaaatacaaaaaattagccaggcatggtggccggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgggaacctgggaggcggagcttccagtgagccgagatcgcgccactgccctccagcctgggcgacagggtgaggct
s panTro5.chr6             30330898 278 + 175400573 taTTggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcggatcacgaggtcaggagatcaagaccatcctggctaacccggtgaaaccctgtctccactaaaaatacaaaaaattagccaggcgtagtggccggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgggaacctgggaggcggagcttgcagtgagccgagatcgcgccactgccctccagcctgggcgacagggtgagact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30565258 278 + 173848474 taTTggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcggatcacgaggtcaggagatcaagaccatcctggctaacccggtgaaaccctgtctccactaaaaatacaaaaaattagccaggcgtagtggccggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgggaacctgggaggcggagcttgcagtgagccgagatcgcgccactgccctccagcctgggcgacagggtgagact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     272335 278 +   2037526 taTTggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcggatcacgaggtcaggagatcaagaccatcctggctaacccggtgaaaccctgtctccactaaaaatacaaaaaattagccaggcgtagtggccggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgggaacctgggaggcggatcttgcagtgagccgagatcgcgccactgccctccagcctgggcgacagggtgagact
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74939372 278 + 122973662 taTTggccgggcgcggtggttcatgcctgtaatcccagcactttggaaggccgaggcgggcggatcacgaggccaggagatcaagaccgtcctggctaacccggtgaaaccccatctctactaaaaatacaaaaaattagccaggagtgttggcgggcgcctgtagtcccagctacccgggaggctgaggcaggaaaatggcgggaacctgggaggcagagcttgcagtgagccaagattgcgccactgcactccagcctgggcgacagggagagact
i nomLeu3.chr1a            C 0 C 0
s dasNov3.JH580105            38622 146 -     45298 TGTTGTTT-------ATAAAACACGGATACAGCCCCATGACTT-----------AGCGGGGGGATCCAAAGGCC-----------------------GACTCG----AATC-----------------------------CCAGGGCTACCGG---------GCAGTTACAG-----CGGGGGGCTAGGGCTGCA---------------------TCGGGCTCCCTGGCCACCGAGCTCCTGCCAC-----------------------GTGTGGCT
i dasNov3.JH580105         C 0 N 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139766 1140 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I
e saiBol1.JH378341           250226  18 +    515838 I
e otoGar3.GL873550           293809 242 +  18854210 I
e cebCap1.NW_016107755v1     876357 2451 -   1771730 I
e calJac3.chr4             30438649  18 + 171630274 I
e colAng1.NW_012115577v1     245685 363 -   1829203 I
e manLeu1.NW_012107142v1     307399  31 -    735854 I
e chlSab2.chr17            29607311  44 -  71996105 I
e cerAty1.NW_012002535v1     457043  31 -    863181 I
e macNem1.NW_012012100v1     357318  31 +   1495729 I
e macFas5.chr4             30108375  18 - 170955103 I
e rheMac8.chr4             30818910  31 + 172585720 I

a score=7820.000000
s hg38.chr6_GL000254v2_alt  1461720 15 +   4827813 ccgtctcaaaa---------aaat
s panTro5.chr6             30331176 23 + 175400573 ccgtctcaaaaaaataa-ataaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30565536 15 + 173848474 ccgtctcaaaa---------aaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     272613 24 +   2037526 ccgtctcaaaaaaaaaaGataaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74939650 21 + 122973662 ccgtcacaaaaaaaaaa---aaaa
i nomLeu3.chr1a            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139766 1140 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I
e saiBol1.JH378341           250226 18 +    515838 I
e otoGar3.GL873550           293809 242 +  18854210 I
e cebCap1.NW_016107755v1     876357 2451 -   1771730 I
e calJac3.chr4             30438649 18 + 171630274 I
e colAng1.NW_012115577v1     245685 363 -   1829203 I
e manLeu1.NW_012107142v1     307399 31 -    735854 I
e chlSab2.chr17            29607311 44 -  71996105 I
e cerAty1.NW_012002535v1     457043 31 -    863181 I
e macNem1.NW_012012100v1     357318 31 +   1495729 I
e macFas5.chr4             30108375 18 - 170955103 I
e rheMac8.chr4             30818910 31 + 172585720 I

a score=16164.000000
s hg38.chr6_GL000254v2_alt  1461735 13 +   4827813 aaataaataaata
s panTro5.chr6             30331199 13 + 175400573 aaataaataaata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30565551 13 + 173848474 aaataaataaata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     272637 13 +   2037526 aaataaataaata
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74939671 13 + 122973662 aagcaaaaTATTA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30108393 13 - 170955103 aagcaaaatactg
i macFas5.chr4             I 18 C 0
s calJac3.chr4             30438667 13 + 171630274 aagcaaaatattg
i calJac3.chr4             I 18 C 0
s saiBol1.JH378341           250244 13 +    515838 aagtaaaaTGTTG
i saiBol1.JH378341         I 18 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139766 1140 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I
e cebCap1.NW_016107755v1     876357 2451 -   1771730 I
e colAng1.NW_012115577v1     245685 363 -   1829203 I
e manLeu1.NW_012107142v1     307399 31 -    735854 I
e chlSab2.chr17            29607311 44 -  71996105 I
e cerAty1.NW_012002535v1     457043 31 -    863181 I
e macNem1.NW_012012100v1     357318 31 +   1495729 I
e rheMac8.chr4             30818910 31 + 172585720 I

a score=289934.000000
s hg38.chr6_GL000254v2_alt  1461748 35 +   4827813 aataaaTCCTATGTcagggtttttcaatgatagca
s panTro5.chr6             30331212 35 + 175400573 aataaatCCTATATcaggatttttcaatgatagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30565564 35 + 173848474 aataaaTCCTATATcaggatttttcaatgatagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     272650 35 +   2037526 aataaatCCTATATcaggatttttcaatgatagca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74939684 35 + 122973662 AATAAATCCTGTATcagggtttttcaatgacagca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30818941 35 + 172585720 aaTAAATACTATATcagggtttttcaattacagca
i rheMac8.chr4             I 31 C 0
s macFas5.chr4             30108406 35 - 170955103 aaTAAATACTATATcagggtttttcaattacagca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     357349 35 +   1495729 aaTAAATACTATATcagggtttttcaattacagca
i macNem1.NW_012012100v1   I 31 C 0
s cerAty1.NW_012002535v1     457074 35 -    863181 aaTAAATACTATATcagggtttttcaattacagca
i cerAty1.NW_012002535v1   I 31 C 0
s chlSab2.chr17            29607355 35 -  71996105 aaTAAATACTATATcagggtttttcaattacagca
i chlSab2.chr17            I 44 C 0
s manLeu1.NW_012107142v1     307430 35 -    735854 aaTAAATACTATATcagggtttttcaattacagca
i manLeu1.NW_012107142v1   I 31 C 0
s calJac3.chr4             30438680 35 + 171630274 aaTAAACCTTATATcagggtttttcaattacagca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           250257 35 +    515838 AATAAATCCTGTATcagtgattttcaagtacagca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     878808 35 -   1771730 aataaacccTATATcagggtttttcaactacagca
i cebCap1.NW_016107755v1   I 2451 C 0
s aotNan1.NW_018496901v1      54935 35 -    486031 aataaacccTATATcagggtttttcaattacagca
i aotNan1.NW_018496901v1   N 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139766 1140 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I
e colAng1.NW_012115577v1     245685 363 -   1829203 I

a score=584629.000000
s hg38.chr6_GL000254v2_alt  1461783 69 +   4827813 c-tgttgacattttaggctggataattctttggtgtgtggtggccctgtgcactgtaggatgtttaccag
s panTro5.chr6             30331247 69 + 175400573 c-tgttgacattttaggctggataattctttggtgtgtggtggccctgtgcactgtaggatgtttaccag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30565599 69 + 173848474 c-tgttgacattttaggctggataattctttggtgtgtggtggccctgtgcactgtaggatgtttaccag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     272685 69 +   2037526 c-tgttgacattttaggctggataattctttggtgtgtggtggccctgtgcactgtaggatgtttaccag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74939719 69 + 122973662 c-tgttgacattttaggctggataattctttggtgtggggtgctcctgtgcactgtaggatgtttaccag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30818976 70 + 172585720 cttgttgacattttaggctggataattctttggtgtggggtgctcctgtgcactgtaggatgtttaccag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30108441 70 - 170955103 cttgttgacattttaggctggataattctttggtgtggggtgctcctgtgcactgtaggatgtttatcag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     357384 70 +   1495729 cttgttgacattttaggctggataattctttggtgtggggtgctcctgtgcactgtaggatgtttaccag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     457109 69 -    863181 c-tgttgacattttaggctggataattctttggtgtggggtgctcctgtgcactgtaggatatttaccag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29607390 69 -  71996105 c-tgttgacattttaggctggagaattctttggtatggggtgctcctgtgcactgtaggatgtttaccag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     307465 69 -    735854 c-tgttgacattttaggctggataattctttggtgtggggtgctcctgtgcactgtaggatatttaccag
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30438715 69 + 171630274 t-tattggcattttaggctggataattctttcatgtggggtgggcctgtacactgtaggttgtttaccag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           250292 69 +    515838 t-tactggcattttaggctggataattctttgatgtggggtgggcctggacactgtaggatgcttaccag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     878843 69 -   1771730 t-tattggcattttaggctggataattctttgatgtggagtgggcctgtacactgtaggatgtttaccag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      54970 60 -    486031 t-tattgacattttacgctggataattctttgatgtgg---------gtaaactgtaggatgtttaccag
i aotNan1.NW_018496901v1   C 0 C 0
s dasNov3.JH567297             5530 68 +     53444 C-TCCTGCCACGTGTGGCTAGG-AGTTCCTGGCCGTgggggcttcctgtgctctgccggccgattagcag
i dasNov3.JH567297         N 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     139766 1140 -   1411461 I
e canFam3.chr35            26323817 1751 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I
e colAng1.NW_012115577v1     245685 363 -   1829203 I

a score=879905.000000
s hg38.chr6_GL000254v2_alt  1461852 83 +   4827813 catccctggcctctaccactagattccagtagcactcctatcccccagttgtgacaaacaaaaatgtctccaagcatgaccaa
s panTro5.chr6             30331316 83 + 175400573 catccctggcctctaccactagattccagtagcactcctatcccctagttgtgacaaacaaaaatgtctccaagcatgagcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30565668 83 + 173848474 catccctggcctctaccactagattccagtagcactcctatcccctagttgtgacaaacaaaaatgtctccaagcatgagcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     272754 83 +   2037526 catccctggcctctgccactagattccagtagcgctcctatcccctagttgtgacaaacaaaaatgtctccaagcatgaccaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74939788 83 + 122973662 catccctggcctctaccactagattccagtagcactcctatcccccagttgtgacaaacaaaaatgtctccaagcatgaccaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30819046 83 + 172585720 catccctggcctctaccactagattccagtagcactcccatcccccagttggggcaaacaaaaatgtctccaagcatgaccaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30108511 83 - 170955103 catccctggcctctaccactagattccagtagcactcccatccgccagttgggacaaacaaaaatgtctccaagcatgaccaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     357454 83 +   1495729 catccctggcctctaccactagattccagtagcactcccatcccccagttggggcaaacaaaaatgtctccaagcatgaccaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     457178 83 -    863181 catccctggcctctaccactagattccagtagcactctcatcctccagttgggacaaacaaaaatgtctccaagcatgaccaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29607459 83 -  71996105 catccctggcctctaccactagattccaggagcactcccatcccccagttgggacaaacaaaaatgtctccaagcatgaccaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     307534 83 -    735854 catccctggcctctaccactagattccagtagcactctcatcctccagttgggacaaacaaaaatgtctccaagcatgaccaa
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30438784 83 + 171630274 catccctggcctctaccactagattccagtagcactcccatccccaagttatgacaaacaaaaatgtctccaagcatgaccga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           250361 83 +    515838 catccctggcctctaccactagattccagcagcactctcatccccaagttatgacaaacaaaaatgtctccaagcatgaccga
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     878912 83 -   1771730 catccctggcctctaccactagattccagcagcactcctatccccaagttatgacaaacaaaaatgtctccaagcatgaccaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      55030 83 -    486031 catccctggcctctaccactagattccagcagcgctcccatccccaagttatgacaaacaaaaatgtctccaagcatgaccga
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     140906 82 -   1411461 catccctggcctctgcc-ctggattccagtagtactcccatcccctacttgtgacaaacaaaaatgtctccagatgtgaccaa
i proCoq1.NW_012149775v1   I 1140 C 0
s dasNov3.JH567297             5598 82 +     53444 cccccctggccccactctccaggagccaggagtgctcccttcccccag-cgtggccagcaaagtcccctcgagacatcgccac
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e canFam3.chr35            26323817 1751 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I
e colAng1.NW_012115577v1     245685 363 -   1829203 I

a score=4317229.000000
s hg38.chr6_GL000254v2_alt  1461935 502 +   4827813 atgtcc------ctgggg-----gaca-aa--acctctgatggaaaaccagtgATCTGTATGTAGTCATATGGCTag-gtctcaaaacagtaatgagtatgtggtgatttatatacacttagaaaca-cacaa-----cacttcatatagtttgcagtttc-catatatgtgatagaagtttaaacacaaggcctgaaaggatacatactaaatttatggcagtgtttgcttccgggag--------gagagagagaaagagcgagagaggaatggaactaagaagagaacTAAATGGACAGAGGGAT-----------TCTCAAATTTTTTTGAGATTAAAATTTAAAAaattaaatctgtaatatttaattttta-----aaa-atctgaggcaaacatagcaaaatgtttgtatttgttaattctaggttgtggttataag-gtgcttgttatatgattttctattattttctatatTAAGTTTTTCCAAAGTAAAATATTTTAGTTAAaataggaaaaatgttgaaaatgaacaatggatagaaat
s panTro5.chr6             30331399 502 + 175400573 atgtcc------ctgggg-----gaca-aa--acctctgatggaaaaccagtgCTCTGTATGTAGTCATATGGCTag-gtctcaaaacagtaatgagtatgtggtgatttatatacacttagaaaca-cacaa-----cacttcatatagtttgcagtttc-catatatgtgatagaagtttaaacacaaggcctgaaaggatacatactaaatttatggcagtgtttgcttctgggag--------gagagagagaaagagagagagaggaatggaaCTAAGAAGAGAACTAAATGGACAGGGGGAA-----------TCTCAAATTTTTTTGAGATTAAAATTTAAAAAATGAAatctgtaatatttaattttta-----aaa-atctgaggcaaacatagcaaaatgtttgtatttgttaattctaggttgtggttataag-gtgcttgttatatgattttctattattttctatatTAAGTTTTTCCAAAGTAAAATATTTTAGTTAAAATAGGAAAACTGTggaaaatgaacaatggatagaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30565751 502 + 173848474 atgtcc------ctgggg-----gaca-aa--acctctgatggaaaaccagtgCTCTGTATGTAGTCATATGGCTag-gtctcaaaacagtaatgagtatgtggtgatttatatacacttagaaaca-cacaa-----cacttcatatagtttgcagtttc-catatatgtgatagaagtttaaacacaaggcctgaaaggatacatactaaatttatggcagtgtttgcttctgggag--------gagagagagaaagagagagagaggaatggaaCTAAGAAGAGAACTAAATGGACAGGGGGAA-----------TCTCAAATTTTTTTGAGATTAAAATTTAAAAAATGAAatctgtaatatttaattttta-----aaa-atctgaggcaaacatagcaaaatgtttgtatttgttaattctaggttgtggttataag-gtgcttgttatatgattttctattattttctatatTAAGTTTTTCCAAAGTAAAATATTTTAGTTAAAATAGGAAAACTGTggaaaatgaacaatggatagaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     272837 502 +   2037526 atgtcc------ctgggg-----gaca-aa--acctctgatggaaaaccagtgCTCTGTATGTAGTCATATGGCTag-gtctcaaaacagtaatgagtatgtggtgatttatacacacttagaaaca-cacaa-----cacttcatatagtttgcagtttc-catatatgtgatagaagtttaaacacaaggcctgaaaggatacatactaaatttatggcagtgtttgcttccgggag--------gagagagagaaagagagagagaggaatggaaCTAAGAAGAGAACTAAATGGACAGAGGGAA-----------TCTCAAATTTTTTTGAGATTAAAATTAAAAAaattaaatctgtaatatttaattttta-----aaa-atctgaggcaaacatagcaaaatgtttgtatttgttaattctaggttgtggttataag-gtgcttgttatatgattttctattattttctatatTAAGTTTTTCCAAAGTAAAATATTTTAGTTAAAATAGGAAAACTGTggaaaatgaacaatggatagaaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74939871 473 + 122973662 atatcc------ctgggg-----gaca-aa--acctctggtggaaaaccagtgATCTGTATGCAGTCATATGGCTag-gtctcaaaacagtaatgagtatgtggtgatttatatacacttagaaaca-cacaa-----cacttcatatagtttgcagtttc-catatatgtgatagaagtttaaacacaaggcctgaaaggatacatactaaatttatggcagtgtttgcttccgggag----------gagagagaaagagagagagaggaatggaactaagaagagaactaaatggacagagggaa-----------tctcaaattt---------------------------atctgtaatatttaattttta-----aaa-atttgaggcaaacatagcaaaatgtttgtatttgttaattctaggttgtggttttaag-gtgcttgctatatgattttctattattttctatatTAAGTTTTTCCAGAATAAAATATTTTAGTTAAAATAGGAAAACTGTAGAAAATGAACAACGGATAGAAAT
i nomLeu3.chr1a            C 0 I 150
s rheMac8.chr4             30819129 463 + 172585720 atgtcc------ctgggg-----gaca-aa--acctctgggggaaaaccagtgATCTGTATGTAGTTCTATGGCTAG-GTCTCAAAACAGTAATGagtatgcaatgatttacatacacttagaaaca-cacaa-----tacttcatgtagtctacagtttc-catatgtgtgatagaagtttaaacacaaggtctgaaaggatacatactaaatttatggcagtatttacttctgggag----------gaaagagagagagagagagagcaatggaactaagaagaaaactaaatggacagagggaa-----------cctcaaattt---------------------------atctgtaaaatttaattttct-----aaa-atctgaggcaaacatagcaaaa----------tgttaattctaggttgtggttataag-gtgcttgttatatgattttctattattttctatatTAAGTTTTTCCAAAATAAAATATTTTAGTTAAAACAGGAAAACTGTAGaaaatgaacaatggatagaaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30108594 463 - 170955103 atgtcc------ctgggg-----gaca-aa--acctctgggggaaaaccagtgATCTGTATGTAGTTCTATGGCTAG-GTCTCAAAACAGTAATGagtatgcaatgatttacatacacttagaaaca-cacaa-----tacttcatgtagtctacagtttc-catatgtgtgatagaagtttaaacacaaggtctgaaaggatacatactaaatttatggcagtatttacttctgggag----------gaaagagagagagagagagagcaatggaactaagaagaaaactaaatggacagagggaa-----------cctcaaattt---------------------------atctgtaaaatttaattttct-----aaa-atctgaggcaaacatagcaaaa----------tgttaattctaggttgtggttataag-gtgcttgttatatgattttctattattttctatatTAAGTTTTTCCAAAATAAAATATTTTAGTTAAAACAGGAAAACTGTAGaaaatgaacaatggatagaaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     357537 463 +   1495729 atgtcc------ctgggg-----gaca-aa--acctctgggggaaaaccagtgATCTGTATGTAGTTCTATGGCTAG-GTCTCAAAACAGTAATGagtatgcaatgatttacatacacttagaaaca-cacaa-----tacttcatatagtctacagtttc-catatgtgtgatagaagtttaaacacaaggtctgaaaggatacatactaaatttatggcagtatttacttctggaag----------gaaagagagagagagagagagcaatggaactaagaagaaaactaaatggacagagggaa-----------cctcaaattt---------------------------atctgtaaaatttaattttct-----aaa-atctgaggcaaacatagcaaaa----------tgttaattctaggttgtggttgtaag-gtgcttgttatatgattttctattattttctatatTAAGTTTTTCCAAAATAAAATATTTTAGTTAAAACAGGAAAACTGTAGAAAATGAAcaatggatagaaat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     457261 471 -    863181 atgtcc------ctgggg-----gaca-aa--acctctggtggaaaaccagtgATCTGTATGTAGTTCTATGGCTAG-GTCTCAAAACAGTAATGagtatgcaatgatttatatacacttagaaaca-cacaa-----tacttcatatagtctgcgatttc-catatatgtgacagaagtttaaacacaaagtctgaaaggatacatactaaatttatggtagtatttgcttctgggag------gagagagagagagagagagagagagcaatggaactaagaagaaaactaaatggacagagggaa-----------cctcaaattt---------------------------atctgtaatatttaattttct-----aaa-atctgaggcaaacatagcaaaatg------tttgttaattctaggttgtggttataag-gtgcttgttatatgattttctattattttctatatTAAGTTTTTCCAAAATAAAATATTttaattaaaacaggaaacctgtagaaaatgaacaatggatagaaat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29607542 463 -  71996105 ttgtcc------ctgggg-----gaca-aa--acctctgggggaaaaccagtgATCTGTATGTAGTTCTATGGCTAG-GTCTCAAAACAGTAATGagtatgcaatgatttacatacacttagaaaca-cacaa-----tacttcatatagtctacagtttc-catatgtgtgatagaagtttaaacacaaggtctgaaatgatacatactaaatttatggcagtatttgcttctgggag--------------gaaagagagagagagagcaatggaactaagaagaaaactaaatgaaaagagagaa-----------cctcaaattt---------------------------atctgtaatatttaattttct-----aaa-atctgaggcaaacatagcaaaatg------tttgttaattctaggttgtggttataag-gtgctagttatatgattttctactgttttctatatTAAGTTTTTCCAAAATAAAATATTTTAGTTaaaacaggaaaactgtagaaaatgaacaatgcatagaaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     307617 471 -    735854 atgtcc------ctaggg-----gaca-aa--acctctggtggaaaaccagtgATCTGTATGTAGTTCTATGGCTag-gtctcaaaacagtaatgagtatgcaatgatttatatacacttagaaaca-cacaa-----cacttcatatagtctgcgatttc-catatatgtgacagaagtttaaacacaaggtctgaaaggatacatactaaatttatggtagtatttgcttctgggag------gagagagagagagagagagagagagcaatggaactaagaagaaaactaaatggacagagggaa-----------cctcaaattt---------------------------atctgtaatatttaattttct-----aaa-atctgaggcaaacatagcaaaatg------tttgttaattctaggttgtggttataag-gtgcttgttatatgattttctattattttctatatTAAGTTTTTCCAAAATAAAATATTttaattaaaacaggaaacctgtagaaaatgaacaatggatagaaat
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30438867 454 + 171630274 gtgtcc------ctggga-----gaca-aa--acctc-ggttaaaaaccagtgATCTGTATGTAGTCATATGGCTCG-GTCTCAAAACACTAATGAATAtgtgataatttatatacacttagaaaca-cacaa-----caattcatgtagtttgcagtttc-catatatatgatagaagtttaaacacagggcctgaaaggatacacaccatatttatggtggtgtttgcttctggg--------------------gagagagagagacggatggaactaagaagggaactaaatggacagagaaaa-----------cctcaaatct---------------------------acctgtaatatttaatttttt-----aaa-aTACgaagcaa----aacaaaatgtttatatttgttaattctagattgtgggaacaagagtgcttattatatgattttctattattttctgtgttaagttttt-caaaataaaatattttagttaaaataggaaaaCTGTAGaaaatgaacaatggatag----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           250444 458 +    515838 gtgtcc------ctgggg-----gaca-aa--acctctagttgaaaaccagtgATCTGTATGTAGTCATATAGCTGA-ATCTCAAAACTGTAATGagtatgtgataatttatatacacttagaaaca-cacaa-----catttcatggagtttgcagtttc-cgtatatatgatagaagtttaaacacagggcctgaaaggatacacattgcatttatggtggtgtttgcttctggg----------------gagagagagagagagagggatggaacttagaagggaactaaatggacagagaaaa-----------cctcaaatct---------------------------atctgtaatgtttaatttttt------ta-atatgaagcaa----agcaaaatgttcatatttgttaattctaggttgtagttacaagagtgcttattatatgattttctattactttctgtgttaagttttt-caaaatgaaatattttagttaaaaTAGGAAAACTGTAGaaaatgaacagtggatag----
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     878995 454 -   1771730 gtgtcc------ctgggg-----gaca-aa--acctctggttgaaaaccagtgATCTATATGTAGCCATATGGCTCG-GTCTCAAAACACTAATGAATAtgtgataatttatatacacttagaaaca-c---a-----catttcatgtagtttgcagtttc-catatatatgatagaagtttaaacacagggcctgaaaggatacacaccacatttatggtggtgtttgcttctggg------------------gagaaagagagagagggatggaactaagaagggaactaaatggacagagaaaa-----------cctcaaatct---------------------------atctgtaatatttaatttttt-----taa-atatgaaacta----agcaaaatgttcatatttgttaattctaggttgtggttacaagagtgcttattatatgattttctattattttctgtgttaaggtttt-caaaataaaatattttagttaaaaTAGGAAAACTGTAGaaaatgaacagtggatag----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      55113 446 -    486031 gtgtcc------ctgggg-----gaca-aa--atctctggttgaaaaccagtgatctatatgtagtcgtatggctTG-GTCTCAAAATACTAATGAATATGTGATAATTTATATACAGTTAGAAACA-CACAA-----CGCTTCATGTAGTTTGCAGTTTC-CATATATat-----------------------------gagacacactacatttatggcggtgtttgcttctggggggagagagagagagagagagagagagagagagggatagaactaagaagggaactaaatggacagaaaaaa-----------cctcaaatct---------------------------atctgtaatatttaatttttt-----tta-atttgaagcaa----agcaaaatgttcatatttcttaattctaggttgtggttacaagggtgcttattatataattttctattattttctgtgttaagttttt-caaaataaaatattttagttaaaataggaaaactgtagaaaatgaacaatggctag----
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     140988 477 -   1411461 atgtcc------ctgagg-----gaca-aa--acctccagttgagaaccactgACGTGTATGTATTCGTATGGCTag-gtcttagaacagtaatgaatgtgaggtcatttatatgcatttagaaaca-cacaagacagcattccatatagtttgcagttccatatatacgtgatagaagttttaatacatggcctgaaaggacacacaccaaattgatggcggtgcttgcttctggaga--gagagagagagagagagagagagagagagagatggaactaagaagagaactccatgcaccaagggga-----------cattgaattt---------------------------at---taacatttcattttta-----aaa-atctggtgaaaatatggcaaaatgtctacatttgttagttctaggttatggttccaagggtgcttgctatattattttctactgttttccatagtaatttttt-caaaatAAAACAATTTAGTTAAAATAGAGAAACTATAAAAAATGAACAATAAT-------
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr35            26325568 427 +  26524999 atgtct-----gCTGGGG-----GAAACAA--ACCCATGACAGGAATCCACAGATCTGCATTTGTTCACGTGGCT-G-GTTTCA-AACAGTAGTGAGCATGAGATCGTTTATACACATGTGAAAACA-CACGA-----AACTCTGTAGGGTTCGAGGTCCTATGTACACATGGCAGAGGCACAAGCATGTGGCCT-----TGTGCACACTGCATGCGTGATTGCGTTTGCTCCTG------------------GAGACACAGGGAGAACAGTATAG-------------------------------------------Cctccaattt---------------------------gtttctaacatttaattttatttgacaaa-gacttgagctaatatggcaaaatgtttacatttgtggatttgaggctatggttaccaggctgcttattatatgattttctattcttttccatactaatgtttt-caaaataaaacaatttagttaaaa-aGgaaaaacataaaaaatgaataaagaat------
i canFam3.chr35            I 1751 C 0
s dasNov3.JH567297             5680 431 +     53444 gtgtcccctcggctgggggaggtgacg-aaccacccctggCGAGGAATCCCCGGCCT--CTGTATTCATAAGGCTAGAAGCTCAAAACGCTG--------------------ACACATTTAAACACAGCACAC-----AACTCTGTACGGT----GGTTCC-TGTGCACATGGAGGACG--GAGGCGTGGGGCT--GAAGGAGACACGTCG-GTTCTCGCCATCACCTGCGtctggg----------------------gagagcaagaggagtgg-gctgggacggg------gtgcacagcgggcagccgtctttctctccacattt-----------------------------------catttcatgttta-----aaaggtttgaagcaaatacggcaaagtttacat---tgttaatactggactgtgattacaggggtgtttgttatatgactttctattcttttccaagttaattttt--caaaagaaaaca----agtttcaa---gggaaatataaaaaatagacaatgtatatacat
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e otoGar3.GL873550           293809 242 +  18854210 I
e colAng1.NW_012115577v1     245685 363 -   1829203 I

a score=3168022.000000
s hg38.chr6_GL000254v2_alt  1462437 309 +   4827813 aaaaatagaaattcagaggaattctaaaataaattctaaaatt--aagaaaaagttcaactcctttcctactactcaggaaaatacaaataatgcgatacaaatacaaaaatgagat-aaactttgtactc-atcagattggcaaaatttttcaaaaatgtccagagctgatgaggatgtggaaaaatgggactct---tcatatgtggctggtttcagtgtgaatgggcactatctttttcaaaagcCT------------------------------------CAAGGCAAATGACTTAAAATGCATTTGAACGGTGACTACAAAGAATATTATAAGAAAAGTAAAATG-
s panTro5.chr6             30331901 309 + 175400573 aaaaatagaaattcaaaggaattctaaaataaattctaaaatt--aagaaaaagttcaactccttccctactactcaggaaaatacaaataatgcgatacaaatacaaaaatgagat-aaactttgtactc-atcaaattggcaaaatttttcaaaaatgtccagagctgatgaggatgtggaaaaatgggactct---tcatatgtggctggtttcagtgtgaataggcactatctttttcaaaagcCT------------------------------------CAAGGCAAATGACTTAAAATGCATTTGAACGGTGACTAGAAAGAATATTATAAGAAAAGTAAAATG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30566253 309 + 173848474 aaaaatagaaattcaaaggaattctaaaataaattctaaaatt--aagaaaaagttcaactccttccctactactcaggaaaatacaaataatgcgatacaaatacaaaaatgagat-aaactttgtactc-atcaaattggcaaaatttttcaaaaatgtccagagctgatgaggatgtggaaaaatgggactct---tcatatgtggctggtttcagtgtgaataggcactatctttttcaaaagcCT------------------------------------CAAGGCAAATGACTTAAAATGCATTTGAACGGTGACTAGAAAGAATATTATAAGAAAAGTAAAATG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     273339 308 +   2037526 aaaaatagaaattcaaaggaattctaaaataaattctaaaatt--aagaaaaagttcaactccttccctactactcaggaaaatacaaataatgcgatacaaatacaaaaatgagat-aaactttgtactc-atcaaattggcaaaatttttcaaaaatgtccagagctgatgaggatgtggaaaaatgggactct---tcatatgtggctggtttcagtgtgaatgggcactatctttttcgaaggcCT------------------------------------CAAGGCAAATGACTTAAAATGCATTTGAACGGTGACTAG-AAGAATATTATAAGAAAAGTAAAATG-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74940494 309 + 122973662 agaaatagaaattcaaaggaattctaaaataaattctaaaatt--aagaaaaagttcaactccttccctactactcaggaaaatacaaataatgtgatacaaatacaaaaatgagat-aaactttgtactt-atcagactagcaaactttttcaaaaatgtccagagctgatgaggatgtggaaaaatgggactct---tcatatgtggcaggctggagtgtgaatgggcattatctttttcgaaagcCT------------------------------------CAAGGCAAATGACTTAAAATGCATTTCAAGGGTCACTAGAAAGAATATTATAAGAAAAGTAAAATG-
i nomLeu3.chr1a            I 150 C 0
s rheMac8.chr4             30819592 309 + 172585720 agaaatagaaattcaaaggcattttaaaataaattctaaaatt--aagaaaaagttcaactccttccctactactcaggaaaatacaaataatgagatacaaatacaaaaatgagat-aaactttgtactc-atcagattggcaaaatttttcaaaaatgtcccgagctgacgaggatgtggaaaaatgggacact---tcatacgttgctggttggagtgtgaatgggcactatctttttcgaaagcCT------------------------------------CAAGGCAAATGACTTAAAGTGCATTCGAAGTGTGACTAGAAAGAATATTATAAGAAAAGTAAAATG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30109057 309 - 170955103 agaaatagaaattcaaaggcattttaaaataaattctaaaatt--aagaaaaagttcaactccttccctactactcagggaaatacaaataatgagatacaaatacaaaaatgagat-aaactttgtactc-atcagattggcaaaatttttcaaaaatgtcccgagctgacgaggatgtggaaaaatgggacact---tcatacgttgctggttggagtgtgaatgggcactatctttttctaaagcCT------------------------------------CAAGGCAAATGACTTAAAGTGCATTCGAAGTGTGACTAGAAAGAATATTATAAGAAAAGTAAAATG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     358000 309 +   1495729 agaaatagacattcaaaggcattttaaaataaattctaaaatt--aagaaaaagttcaactccttccctactactcaggaaaatacaaataatgagatacaaatacaaaaatgagat-aaactttgtactc-atcagattggcaaaatttttcaaaaatgtcccgagctgacgaggatgtggaaaaatgggacact---tcatacgttgctggttggagtgtgaatgggcactatctttttcgaaagcCT------------------------------------CAAGGCAAATGACTTAAAGTGCATTCGAAGTGTGACTAGAAAGAATATTATAAGAAAAGTAAAATG-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     457732 308 -    863181 agaaatagaaattcaaaggcattctaaaataaattctaaaatt--aagaaaaagttcaactccttccctactactcaggaaaatacaaatagtg-gatacaaatacaaaaatgagat-aaactttgtactc-atcagactggcaaaatttttcaaaaatgtcccaagctgatgaggatgtggaaaaatgggacact---tcatacggtgctggttggagtgtgaatgggcactatctttttcgaaagcCT------------------------------------CAAGGCAAATGACTTAAAGTGAATTCGAAGTGTGACTAGAAAGAATATTATAAGAAAAGTAAAATG-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29608005 307 -  71996105 agaaatagaaattcaaaggcattctaaaataaattctaaaatt--aagaaaaagttcaattccttccctactattcaggaaaatacaaatagtg-gatacaaatacaaaaatgagat-aaactttgtactc-atcagattggtgaaatttttcaaaaatgtcccaagctgacgaggatgtggaaaaatgggacact---tcatacgttgctggttggagtgtg-atgggcactatccttttcgaaaacCT------------------------------------CAAGGCAAATGACTTAAAGTGCATTCGAAGTGTGACTAGAAAGAATATTATAAGAAAAGTAAAATG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     308088 308 -    735854 agaaatagaaattcaaaggcattctaaaataaattctaaaatt--aagaaaaagttcaactccttccctactactcaggaaaatacaaatagtg-gatacaaatacaaaaatgagat-aaactttgtactc-atcagactggcaaaatttttcaaaaatgtcccaagctgatgaggatgtggaaaaatgggacact---tcatacggtgctggttggagtgtgaatgggcactatctttttcgaaagcCT------------------------------------CAAGGCAAATGACTTAAAGTGAATTCGAAGTGTGACTAGAAAGAATATTATAAGAAAAGTAAAATG-
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30439321 295 + 171630274 --agatagaaattcacaggaattctaa------------aatt--aaaaataagttcaactccttccctactactcaggaaaatacaaataatgagatacaaatacaaagatgaaat-taactttgtactc-atcagattggcaaaatgtttcaaaaatgtcctgagctgatgaggatgtggaaaaatgggactct---tcatacattgctggtaggagtgtgaatgggcaccatctttctcaaaagcCT------------------------------------CAAGGCAAATGACTTGAAATGCATTCAAAGGGTGACTAGAAAGAATATTATAAGAAAAGTAAAATG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           250902 307 +    515838 --agatagaaattcacaggaattctaaaataaattctagaatt--aagaaaaagttcaactccttccctactactcaggaaaatacaaataatgagatacaaatacagaaatgaaat-taactttgtactc-atcagattggcaaaatgtttcaaaaatgtcctgagctgatgaggatgtggaaaaatgggactct---tcatacattgctggtaggagtgtgaatgggcaccacctttctcgaaagcct------------------------------------taaggcaaatgacttaaaaTGCATTCGAAGGGTGACTAGAAAGAATATTATGAGAAAAGTAAAATG-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     879449 306 -   1771730 --agatagaaattcacaggaattctaa-ataaattctaaaatt--aagaaaaagttcaactccttccttactactcaggaaaatacaaataatgagatacaaatacaaaaatgaaat-taactttgtactc-atcagattggcaaaatgtttcaaaaatgtcctgagctgatgaggatgtggaaaaatgggactct---tcacacattgctggtaagagtgtgaatgggcaccatctttctcgaaagcCT------------------------------------CAAGGCAAATGACTTGAAATGCATTTGAAGGGTGACTAGAAAGAATATTATAAGAAAAGTAAAATG-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      55559 305 -    486031 --agatagaaattcacaggaattctaaaataaattctaaaatt--aagaaaaagttcaactccttccctgctactcaggaaaatacaaataatgagatacaaatacaaaaatgaaat-taactttgtactc-atcagattggcaaaatgtttcaaaaatgtcctgagctgatgaggatgtgg-aaaatgggactct---tcatacattgctggtaagagtgtgaatgggcaccatctttctcgaaagcCT------------------------------------CAAGGCAAATGACTTGAAATGCATTCCAAGGGTGACT-GAAAGAATATTATAAGAAAAGTAAAATG-
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     141465 280 -   1411461 AGAAATAGAAATTTAAAAGAATTCTAAAATAATTTCTAAAAT---------AAGTTCAAATCCCTCCCTACTGTTTGGA---------------------Aaatacaagaatgagac-aaactttgtactc-atcagcttggcaaaatttattttaaatgtccagagctgacaaggatgtggaaaaatgggatgct---tcatatgctg-tggtaggcataagaatggtcactatctttttggaaagcaT------------------------------------CAGGGCAAATGACATAAAATGAAATCAGTGGGTGACTAGAAAGAATATTATAAGAAAAGTAAAATG-
i proCoq1.NW_012149775v1   C 0 I 252
s canFam3.chr35            26325995 295 +  26524999 aaaaataaatattcaaactaattct----taaattctaaaat-----aaaaaagttcaaa---ctgcctggtactcaggaaaatatagataatgagatacaaaca---gtatgagataaaactctgtagtc-accagattggc--attttttttttaatttccaaaggcaataaggatgtggaaaaatgagaccctttattatacattgctggtaagaatgtgagtggtcatcaccttGCATCAGAAACT------------------------------------GAAGGCAAATAATGTATAATGCAATCAACTGGTGATGAGAAAGCATGTTAT---AAATGTAAAAGG-
i canFam3.chr35            C 0 I 23
s dasNov3.JH567297             6111 315 +     53444 ------------tcaaaggaagtctaaaataaattctaaaactgaaataaagagtttagc---ctccctactactcaggaaaatgcaaat----------taaaacaacaatgagataaaactctgtacttaatctgataagctaaaaggtct--aagtgtccagagcggacaaggggtgggggaGGTG-----CC---CCGTGCGTGGCTCCTAGGAGAGTTGATGGCCGCGCTCTCTTTCGACAGCGTCTAGCAGGATTAAATGGAGTATCCCAAGAGCAAAGACAAGATAAATGATATAAAATGCAGTCCA--GGTGATTAGAAAGCATATTATGAGAAAAGT-AAATGT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e otoGar3.GL873550           293809 242 +  18854210 I
e colAng1.NW_012115577v1     245685 363 -   1829203 I

a score=92055.000000
s hg38.chr6_GL000254v2_alt  1462746 11 +   4827813 CACACAGGATT
s panTro5.chr6             30332210 11 + 175400573 AACACAGGATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30566562 11 + 173848474 AACACAGGATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     273647 11 +   2037526 CACACAGGATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74940803 11 + 122973662 CACACAGGATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30819901 11 + 172585720 CACATGGGATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30109366 11 - 170955103 CACATGGGATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     358309 11 +   1495729 CACATGGGATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     458040 11 -    863181 CACACGGGATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29608312 11 -  71996105 CACACGGGATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     308396 11 -    735854 CACACGGGATT
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30439616 11 + 171630274 TACACAGGATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           251209 11 +    515838 GACACAGGATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     879755 11 -   1771730 TACACAGGATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      55864 11 -    486031 TACACAGGACT
i aotNan1.NW_018496901v1   C 0 C 0
s canFam3.chr35            26326313 10 +  26524999 -TAAAAGGATT
i canFam3.chr35            I 23 C 0
s dasNov3.JH567297             6426 11 +     53444 AAACCAGAATT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     141745 252 -   1411461 I
e otoGar3.GL873550           293809 242 +  18854210 I
e colAng1.NW_012115577v1     245685 363 -   1829203 I

a score=1200348.000000
s hg38.chr6_GL000254v2_alt  1462757 118 +   4827813 TCAAAA------------------------------GGGTTTTT-AGGCTTCAAGATAAGTCAGGGACGGTG--------GGGTCGAAATGAAGTCAAGGGACAGC-TTACACAG----AGATACCCTATAACCAGTCTCCCAACAAGAGAGCTAGATTTTA
s panTro5.chr6             30332221 118 + 175400573 TCAAAA------------------------------GGATTTTT-AGGCTTCAAGGTAAGTCAGGGACGGTG--------GGGTCGAAATGAAGTCAAGGGACAGC-TTACACAG----AGATACCCTATAACCAGTCTCCCAACAAGAGAGCTAGATTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30566573 118 + 173848474 TCAAAA------------------------------GGATTTTT-AGGCTTCAAGGTAAGTCAGGGACGGTG--------GGGTCGAAATGAAGTCAAGGGACAGC-TTACACAG----AGATACCCTATAACCAGTCTCCCAACAAGAGAGCTAGATTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     273658 117 +   2037526 TCAAAA------------------------------GGGTTTTT-AGGCTTCAAGATAAGTCAGGGACGGT---------GGGTCGAAATAAAGTCAAGGGACAGC-TTACACAG----AGATACCCTATAACCAGTCTCCCAACAAGAGAGCTAGATTTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74940814 118 + 122973662 TCAAAA------------------------------GGGTTTTT-AGGCTTCAAGATAAGTCAGGGACGGTG--------GGGTCAGAATGAAGTCAAGGGACAGC-TTACACAG----AGATACCCTATAACCAGTCTCCCAACAAGAGAGCTAGATTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30819912 122 + 172585720 TCAAAA------------------------------GGATTTTT-AGGCTTCAAGATAAGTCAGGGACGGTG--------GGGTCGGAATGAAGTCAAGGGACAGC-TTACACAGAGATAGATACCCTATAACCAGTCTCCCGACAAGAGAGCTAGATTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30109377 122 - 170955103 TCAAAA------------------------------GGATTTTT-AGGCTTCAAGATAAGTCAGGGACGGTG--------GGGTCGGAATGAAGTCAAGGGACAGC-TTACACAGAGATAGATACCCTATAACCAGTCTCCCGACAAGAGAGCTAGATTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     358320 122 +   1495729 TCAAAA------------------------------GGATTTTT-AGGCTTCAAGATAAGTCAGGGACGGTG--------GGGTCGGAATGAAGTCAAGGGACAGC-TTACACAGAGATAGATACCCTATAACCAGTCTCCCGACAAGAGAGCTAGATTTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     458051 118 -    863181 TCAAAA------------------------------GGGTTTTT-AGGCTTCAAGAGAAGTCAGGGACGGTG--------GGGTCGGAATGAAGTCAAGGGACGGC-TTACACAG----AGATACCCTTTAACCAGTCTCCCAACAAGAGAGCTAGATTTTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29608323 122 -  71996105 TCAAAA------------------------------GCGTTTTT-AGGCTTCAAGATAAGTCAGGGATGGTG--------GGGTCGGAATGAAGTCAAGGGACAGC-TTACACAGAGATAGATACCCTATAACCAGTCCCCCGACAAGAGAGCTAGATTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     308407 118 -    735854 TCAAAA------------------------------GGGTTTTT-AGGCTTCAAGATAAGTCAGGGACGGTG--------GGGTCGGAATGAAGTCAAGGGACGGC-TTACACAG----AGATACCCTTTAACCAGTCTCCCAACAAGAGACCTAGATTTTA
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30439627 118 + 171630274 TCAGAA------------------------------GGGTTTTT-AGGCTTCAAGATAAGTCAGGCACTTTG--------TGGTCGGAATGATGTCAAGGGACAGC-TTACACAG----AGATACCCTATAACCAGTCTCCCGAGGAGAGAGCTAGATTTTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           251220 119 +    515838 TCAGAA------------------------------GGGTTTTTAAGGCTTCAAGGTAAGTCAGGCACTGCG--------CGGCTGGAATGAAGTCAAGGGACAGC-TTACACAG----AGATACCCTATCACCAGTCTCCCGAGGAGAGAGAGAGATTTTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     879766 119 -   1771730 TCAGAA------------------------------GAGTTTTTAAGGCTTCAAGATAAGTCAGGCACTGTG--------CGGTCGGAATGAAGTCAAGGGACAGC-TTACACAG----AGATACCCTATAACCAGTCTCCCGAGGACAGAGCTAGATTTTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      55875 118 -    486031 TCAGAA------------------------------GGGTTTTT-AGGCTTCAAGATAAGTCAGGCACAGTG--------TGGTCGGAATGAAGTCAAGGGACAGT-TTACACAG----AGATACCCTATAACCAGTCTCCCGAGGAGAGAGCTAGATTTTA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     141997 117 -   1411461 TCAAAA------------------------------AGGTTTTT-AGACTTCAAGATAAGTCAGG-ACTGTG--------GGGTAGGAATGAGGTCAAGGGACAGC-CTACACAG----AGATACCCTATAACCAGCCTCCCCAGGAGAGTGCTAGATTTTA
i proCoq1.NW_012149775v1   I 252 I 33
s canFam3.chr35            26326323  98 +  26524999 TCTAAA------------------------------AGGTTTTC-AGACTTCAGGACAAGT-------------------------GAAGAATGTGGAGGAGCAGCACTGTGAAG----GGAGAGCCTGTACCTGGTTTCCCTAGGAGA----CAAATTTTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297             6437 153 +     53444 TCAAAAAAGAAGGTTGCAAAAAAAAAAAAAAAAAAGAAGTGTCC-AGACTTCAGGAGGAGTCCAGGCCTGTGTGTGGGGTGGGCGGGAGTGCCCAGAAGGGGC--C-CTACACAA----AGATATCCCAGAACCAGACCCCCGGC-AGGGAGCTAGATTGTA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e otoGar3.GL873550           293809 242 +  18854210 I
e colAng1.NW_012115577v1     245685 363 -   1829203 I

a score=401745.000000
s hg38.chr6_GL000254v2_alt  1462875 41 +   4827813 TTTAGTTAAAAATAGAAATTAGAAACAGGAGGTAGTAAAAA
s panTro5.chr6             30332339 41 + 175400573 TTTAGTTAAAAATAGAAATTAGAAACAGGAGGTAGTAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30566691 41 + 173848474 TTTAGTTAAAAATAGAAATTAGAAACAGGAGGTAGTAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     273775 41 +   2037526 TTTAGTTAAAAATAGAAATTAGAAACAGGAGGTAGTAAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74940932 41 + 122973662 TTTAGTTAAAAATAGAAATTAGAAACAGGAGGTAGTAAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30820034 41 + 172585720 TTTAGTTAAAAATAGAAATTCGAAACTGGAGGTAGGAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30109499 41 - 170955103 TTTAGTTAAAAATAGAAATTCGAAACTGGAGGTAGGAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     358442 41 +   1495729 TTTAGTTAAAAATAGAAATTCGAAACTGGAGGTAGGAAAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     458169 41 -    863181 TTTAGTTAAAAATAGAAATTCGAAACTAGAGGTAGTAAAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29608445 41 -  71996105 TTTAGTTAAAAATAGAAATTCGAAACTGGAGGTAGTAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     308525 41 -    735854 TTTAGTTAAAAATAGAAATTCGAAACTAGAGGTAGTAAAAA
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30439745 41 + 171630274 CTTAGTTGAAAATGGAAATTAGAAACTAGAGGTAGTAAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           251339 41 +    515838 CTTAGTTAAAAATGGAAATTAGAAACTAGAGGCAGTAAAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     879885 41 -   1771730 CTTAGTTAAAAATGGAAATTAGAAACTAGAAGTAGTAAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      55993 41 -    486031 CTTAGTTAAAAATGGAAATTAGAAACTAGAGGTAGTAAAAA
i aotNan1.NW_018496901v1   C 0 C 0
s canFam3.chr35            26326421 41 +  26524999 CTTAGTTAAAAATAGGCATCAGAAACTGAAAGAAATAAAAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297             6590 37 +     53444 ----CTCAAAAATAAGAAGTAGAAAAGGAGAGCCATAAAAA
i dasNov3.JH567297         C 0 I 1179
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     142114 33 -   1411461 I
e otoGar3.GL873550           293809 242 +  18854210 I
e colAng1.NW_012115577v1     245685 363 -   1829203 I

a score=17198.000000
s hg38.chr6_GL000254v2_alt  1462916 3 +   4827813 CAG
s panTro5.chr6             30332380 3 + 175400573 CAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30566732 3 + 173848474 CAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     273816 3 +   2037526 CAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74940973 3 + 122973662 CAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30820075 3 + 172585720 CAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30109540 3 - 170955103 CAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     358483 3 +   1495729 CAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     458210 3 -    863181 CAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29608486 3 -  71996105 CAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     308566 3 -    735854 CAG
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30439786 2 + 171630274 CA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           251380 3 +    515838 CAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     879926 3 -   1771730 CAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      56034 2 -    486031 CA-
i aotNan1.NW_018496901v1   C 0 C 0
s canFam3.chr35            26326462 3 +  26524999 CAG
i canFam3.chr35            C 0 I 195
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142114 33 -   1411461 I
e otoGar3.GL873550           293809 242 +  18854210 I
e colAng1.NW_012115577v1     245685 363 -   1829203 I

a score=127319.000000
s hg38.chr6_GL000254v2_alt  1462919 29 +   4827813 GG-Ttttcttcctttctttctttttttctt
s panTro5.chr6             30332383 29 + 175400573 AG-Ttttctttctttctttctttctttctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30566735 29 + 173848474 AG-Ttttctttctttctttctttctttctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     273819 29 +   2037526 GG-Ttttcttcctttctttctttctttctt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74940976 28 + 122973662 GG--TTTCTTTCTCtttctttttctttctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30820078 30 + 172585720 GGCGtttctttctttctttctttctttctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30109543 30 - 170955103 GGCGtttttttctttctttctttctttctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     358486 30 +   1495729 GGCGtttctttctttctttctttctttctt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     458213 30 -    863181 GGGGTTTTTttctttctttctttctttttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29608489  5 -  71996105 GGCtt-------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     308569 30 -    735854 GGGTTTTttttctttctttctttctttttt
i manLeu1.NW_012107142v1   C 0 I 9057
s calJac3.chr4             30439788 28 + 171630274 --GTTCTCTTGCTTTCtttctttctttctt
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     879929 24 -   1771730 ---ttctct---tttctttctttctttctc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      56036 28 -    486031 --GTtttctttctttctttctttctttctt
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142114 33 -   1411461 I
e canFam3.chr35            26326465 195 +  26524999 I
e saiBol1.JH378341           251383  0 +    515838 C
e otoGar3.GL873550           293809 242 +  18854210 I
e colAng1.NW_012115577v1     245685 363 -   1829203 I

a score=27843.000000
s hg38.chr6_GL000254v2_alt  1462948 5 +   4827813 tcttt
s panTro5.chr6             30332412 5 + 175400573 tcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30566764 5 + 173848474 tcttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     273848 5 +   2037526 tcttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941004 5 + 122973662 ccttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30820108 5 + 172585720 tcttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30109573 5 - 170955103 tcttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     358516 5 +   1495729 tcttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     458243 5 -    863181 ttttt
i cerAty1.NW_012002535v1   C 0 I 77
s manLeu1.NW_012107142v1     317656 5 -    735854 tcttt
i manLeu1.NW_012107142v1   I 9057 C 0
s calJac3.chr4             30439816 5 + 171630274 tcttt
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     879953 5 -   1771730 tttct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      56064 5 -    486031 ttttt
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142114 33 -   1411461 I
e canFam3.chr35            26326465 195 +  26524999 I
e saiBol1.JH378341           251383 0 +    515838 C
e otoGar3.GL873550           293809 242 +  18854210 I
e colAng1.NW_012115577v1     245685 363 -   1829203 I
e chlSab2.chr17            29608494 0 -  71996105 C

a score=17259.000000
s hg38.chr6_GL000254v2_alt  1462953 4 +   4827813 cttt
s panTro5.chr6             30332417 4 + 175400573 cttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30566769 4 + 173848474 cttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     273853 4 +   2037526 cttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941009 4 + 122973662 cttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30820113 4 + 172585720 tttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30109578 4 - 170955103 tttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     358521 4 +   1495729 cttt
i macNem1.NW_012012100v1   C 0 C 0
s manLeu1.NW_012107142v1     317661 4 -    735854 cttt
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30439821 4 + 171630274 tttt
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     879958 4 -   1771730 ttct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      56069 4 -    486031 tttt
i aotNan1.NW_018496901v1   C 0 I 3
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142114 33 -   1411461 I
e canFam3.chr35            26326465 195 +  26524999 I
e saiBol1.JH378341           251383 0 +    515838 C
e otoGar3.GL873550           293809 242 +  18854210 I
e colAng1.NW_012115577v1     245685 363 -   1829203 I
e chlSab2.chr17            29608494 0 -  71996105 C
e cerAty1.NW_012002535v1     458248 77 -    863181 I

a score=9343.000000
s hg38.chr6_GL000254v2_alt  1462957 4 +   4827813 cttt
s panTro5.chr6             30332421 4 + 175400573 cttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30566773 4 + 173848474 cttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     273857 4 +   2037526 cttc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941013 4 + 122973662 cttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30820117 4 + 172585720 tttt
i rheMac8.chr4             C 0 I 661
s macNem1.NW_012012100v1     358525 4 +   1495729 cttt
i macNem1.NW_012012100v1   C 0 C 0
s manLeu1.NW_012107142v1     317665 4 -    735854 cttg
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30439825 4 + 171630274 tttt
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     879962 4 -   1771730 ttct
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142114 33 -   1411461 I
e canFam3.chr35            26326465 195 +  26524999 I
e saiBol1.JH378341           251383 0 +    515838 C
e otoGar3.GL873550           293809 242 +  18854210 I
e aotNan1.NW_018496901v1      56073 3 -    486031 I
e colAng1.NW_012115577v1     245685 363 -   1829203 I
e chlSab2.chr17            29608494 0 -  71996105 C
e cerAty1.NW_012002535v1     458248 77 -    863181 I
e macFas5.chr4             30109582 0 - 170955103 C

a score=4431.000000
s hg38.chr6_GL000254v2_alt  1462961 2 +   4827813 ct
s panTro5.chr6             30332425 2 + 175400573 ct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30566777 2 + 173848474 ct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     273861 2 +   2037526 ct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941017 2 + 122973662 ct
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1     358529 2 +   1495729 ct
i macNem1.NW_012012100v1   C 0 C 0
s manLeu1.NW_012107142v1     317669 2 -    735854 ct
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30439829 2 + 171630274 tt
i calJac3.chr4             C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142114 33 -   1411461 I
e canFam3.chr35            26326465 195 +  26524999 I
e saiBol1.JH378341           251383 0 +    515838 C
e otoGar3.GL873550           293809 242 +  18854210 I
e aotNan1.NW_018496901v1      56073 3 -    486031 I
e cebCap1.NW_016107755v1     879966 0 -   1771730 C
e colAng1.NW_012115577v1     245685 363 -   1829203 I
e chlSab2.chr17            29608494 0 -  71996105 C
e cerAty1.NW_012002535v1     458248 77 -    863181 I
e macFas5.chr4             30109582 0 - 170955103 C
e rheMac8.chr4             30820121 661 + 172585720 I

a score=-3920.000000
s hg38.chr6_GL000254v2_alt  1462963 11 +   4827813 ctctttctttc-
s panTro5.chr6             30332427  9 + 175400573 ttc--tctttc-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30566779  3 + 173848474 ttc---------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     273863  2 +   2037526 -tc---------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941019  3 + 122973662 tcc---------
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1     358531 11 +   1495729 ttctttctttc-
i macNem1.NW_012012100v1   C 0 I 605
s manLeu1.NW_012107142v1     317671 11 -    735854 ttcttgctttc-
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     879966 12 -   1771730 ctctctctattt
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142114 33 -   1411461 I
e canFam3.chr35            26326465 195 +  26524999 I
e saiBol1.JH378341           251383  0 +    515838 C
e otoGar3.GL873550           293809 242 +  18854210 I
e aotNan1.NW_018496901v1      56073  3 -    486031 I
e calJac3.chr4             30439831  0 + 171630274 C
e colAng1.NW_012115577v1     245685 363 -   1829203 I
e chlSab2.chr17            29608494  0 -  71996105 C
e cerAty1.NW_012002535v1     458248 77 -    863181 I
e macFas5.chr4             30109582  0 - 170955103 C
e rheMac8.chr4             30820121 661 + 172585720 I

a score=18251.000000
s hg38.chr6_GL000254v2_alt  1462974 47 +   4827813 ctccttccttccttccttccttccttcctttc-tttcttccttccttt-
s panTro5.chr6             30332436 45 + 175400573 tttctttctttctttcctccttccttccgttc---tctttctttcttt-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30566782 33 + 173848474 ------------tttcctccttccttccgttc---tctttctttcttt-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     273865 26 +   2037526 ------------tttctttctttct----------tctttctttcttt-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941022 35 + 122973662 ------------ttccttccttccttccttcc-ttccttccttccttc-
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            29608494  4 -  71996105 --------------------------------------------cttt-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     317682 40 -    735854 --------ttgctttcttgctttcttgcttttctttctttctttcttt-
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     879978 47 -   1771730 -ctctctctttctttccttctttctttctttc-tttcctcctttccttt
i cebCap1.NW_016107755v1   C 0 I 69
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142114 33 -   1411461 I
e canFam3.chr35            26326465 195 +  26524999 I
e saiBol1.JH378341           251383  0 +    515838 C
e otoGar3.GL873550           293809 242 +  18854210 I
e aotNan1.NW_018496901v1      56073  3 -    486031 I
e calJac3.chr4             30439831  0 + 171630274 C
e colAng1.NW_012115577v1     245685 363 -   1829203 I
e cerAty1.NW_012002535v1     458248 77 -    863181 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109582  0 - 170955103 C
e rheMac8.chr4             30820121 661 + 172585720 I

a score=28368.000000
s hg38.chr6_GL000254v2_alt  1463021 17 +   4827813 ctttctttc--tttctttc
s panTro5.chr6             30332481 17 + 175400573 ctttctttc--tttctttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30566815 17 + 173848474 ctttctttc--tttctttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     273891 17 +   2037526 ctttctttc--tttctttc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941057 19 + 122973662 ctttctttctttttctttc
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            29608498 17 -  71996105 ctttctttc--ttttcttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     317722 17 -    735854 ctttctttc--tttctttc
i manLeu1.NW_012107142v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142114 33 -   1411461 I
e canFam3.chr35            26326465 195 +  26524999 I
e saiBol1.JH378341           251383  0 +    515838 C
e otoGar3.GL873550           293809 242 +  18854210 I
e aotNan1.NW_018496901v1      56073  3 -    486031 I
e cebCap1.NW_016107755v1     880025 69 -   1771730 I
e calJac3.chr4             30439831  0 + 171630274 C
e colAng1.NW_012115577v1     245685 363 -   1829203 I
e cerAty1.NW_012002535v1     458248 77 -    863181 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109582  0 - 170955103 C
e rheMac8.chr4             30820121 661 + 172585720 I

a score=21597.000000
s hg38.chr6_GL000254v2_alt  1463038 22 +   4827813 -tttctttttctt--tttctttttc
s panTro5.chr6             30332498 24 + 175400573 -tttctttttctttctttctttctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30566832 20 + 173848474 -tttc--tttctt--tcttttcttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     273908 22 +   2037526 -tttc--tttctttctttctttttc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941076 22 + 122973662 -tttc--ttccttccttccttcctt
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            29608515 22 -  71996105 -tctt--ttcttttcttttcttttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     317739 22 -    735854 -tttc--tttctttctttatttctt
i manLeu1.NW_012107142v1   C 0 C 0
s saiBol1.JH378341           251383 22 +    515838 TTCTC-TTTTCtttctttctttc--
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142114 33 -   1411461 I
e canFam3.chr35            26326465 195 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I
e aotNan1.NW_018496901v1      56073  3 -    486031 I
e cebCap1.NW_016107755v1     880025 69 -   1771730 I
e calJac3.chr4             30439831  0 + 171630274 C
e colAng1.NW_012115577v1     245685 363 -   1829203 I
e cerAty1.NW_012002535v1     458248 77 -    863181 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109582  0 - 170955103 C
e rheMac8.chr4             30820121 661 + 172585720 I

a score=32207.000000
s hg38.chr6_GL000254v2_alt  1463060 16 +   4827813 ttttcttttcttttcg
s panTro5.chr6             30332522 16 + 175400573 ttttcttttctttTCg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30566852 16 + 173848474 ctttctCTGAGACACG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     273930 16 +   2037526 ttttcttttcttttcg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941098 16 + 122973662 tctttcttttttttca
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30109582 13 - 170955103 ---tttttttttttcg
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29608537 15 -  71996105 -ttttttttttttttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     317761 15 -    735854 -ctttttttttttttg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     246048 16 -   1829203 ttttttttttttttca
i colAng1.NW_012115577v1   I 363 C 0
s saiBol1.JH378341           251405 16 +    515838 ttttcttttctttttt
i saiBol1.JH378341         C 0 I 2
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142114 33 -   1411461 I
e canFam3.chr35            26326465 195 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I
e aotNan1.NW_018496901v1      56073  3 -    486031 I
e cebCap1.NW_016107755v1     880025 69 -   1771730 I
e calJac3.chr4             30439831  0 + 171630274 C
e cerAty1.NW_012002535v1     458248 77 -    863181 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=-6758.000000
s hg38.chr6_GL000254v2_alt  1463076 1 +   4827813 -a
s panTro5.chr6             30332538 1 + 175400573 -a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30566868 1 + 173848474 -C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     273946 1 +   2037526 -a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941114 1 + 122973662 -a
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30109595 1 - 170955103 -a
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29608552 1 -  71996105 -a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     317776 1 -    735854 -a
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     246064 1 -   1829203 -a
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30439831 1 + 171630274 g-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           251423 1 +    515838 t-
i saiBol1.JH378341         I 2 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142114 33 -   1411461 I
e canFam3.chr35            26326465 195 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I
e aotNan1.NW_018496901v1      56073 3 -    486031 I
e cebCap1.NW_016107755v1     880025 69 -   1771730 I
e cerAty1.NW_012002535v1     458248 77 -    863181 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=1861.000000
s hg38.chr6_GL000254v2_alt  1463077 1 +   4827813 g
s panTro5.chr6             30332539 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30566869 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     273947 1 +   2037526 g
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941115 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30109596 1 - 170955103 g
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29608553 1 -  71996105 g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     317777 1 -    735854 g
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     246065 1 -   1829203 g
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30439832 1 + 171630274 g
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           251424 1 +    515838 a
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     880094 1 -   1771730 t
i cebCap1.NW_016107755v1   I 69 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142114 33 -   1411461 I
e canFam3.chr35            26326465 195 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I
e aotNan1.NW_018496901v1      56073 3 -    486031 I
e cerAty1.NW_012002535v1     458248 77 -    863181 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=289747.000000
s hg38.chr6_GL000254v2_alt  1463078 50 +   4827813 acagag------------------------------ttttgctttggttgcccaggctggggtgcaatggtgcaatctca
s panTro5.chr6             30332540 50 + 175400573 acagag------------------------------ttttgctttggttgcccaggctggagtgcaatggtgcgatctca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30566870 80 + 173848474 ACAGGGGATAGGNNNNNNNNNNNNNNNNNNNNGAGTttttgctttggttgcccaggctggagtgcaatggtgcgatctca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     273948 50 +   2037526 acagag------------------------------ttttgctttggttgcccaggctggagtgcaatggtgcgatctca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941116 50 + 122973662 acagag------------------------------ttttgctttggttgcccaggctggagtgcaatcgtgcgatctca
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30109597 50 - 170955103 acagag------------------------------ttttgctttggttgcccaggctggagtgcaatgatgcgatcttg
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29608554 50 -  71996105 acagag------------------------------ttttgctttggttgcccaggctggagtgcaatgatgtgatcttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     317778 50 -    735854 acagag------------------------------ttttgctttggttgcccaggctggagtgcaatgatgcgatcttg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     246066 50 -   1829203 acagag------------------------------ttttgctttggatgcccaggctggagtgcaatgatgctatcttg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30439833 50 + 171630274 acagag------------------------------ttttgctttggttgcccaggctggagttcaatggcatgacctcg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           251425 47 +    515838 acagag------------------------------ttttgctt---ttgcccaggttggagcgcaatggcatgacctcg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     880095 50 -   1771730 acagag------------------------------ttttgctttggttacccaggctgcagtgcaatggcatgaccttg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      56076 50 -    486031 acagag------------------------------ttttgctttggttgcccaggttggagtgcaatggcaagacctcg
i aotNan1.NW_018496901v1   I 3 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142114 33 -   1411461 I
e canFam3.chr35            26326465 195 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I
e cerAty1.NW_012002535v1     458248 77 -    863181 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=1462638.000000
s hg38.chr6_GL000254v2_alt  1463128 194 +   4827813 gctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggattacagggctgtgccaccatgcctggctgattcttgta-tttttagtagagacagggtttcaccatgttgatcaggctggtgtt-gaactcctgacctccagtgatcagcccgccttggcctcccaaag
s panTro5.chr6             30332590 194 + 175400573 gctcactgtaacctccgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggattacagggctgtgccaccatgcctggctaatttttgta-tttttagtagagacagggtttcaccatgttgatcaagctggtgtt-gaactcctgacctccagtgatcagcccgcctcggcctcccaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30566950 194 + 173848474 gctcactgtaacctccgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggattacagggctgtgccaccatgcctggctaatttttgta-tttttagtagagacagggtttcaccatgttgatcaagctggtgtt-gaactcctgacctccagtgatcagcccgcctcggcctcccaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     273998 193 +   2037526 gctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggattacagggctgtgccaccatgcctggctaatttttgta-tttttagtagagacagggtttcaccatgttgatcaggctggtgtt-gaactcctgacctcc-gtgatcagcccgccttggcctcccaaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941166 195 + 122973662 gctcactgcaacctccgcctcccaggtgcaagcgattctcctgcctcagcctcccaagtagctgggattacagggctgtgccaccatgcctggctaatttttgta-tttttagtagagacagggtttcaccatgttgatcaggctggtgttggaactcctgacctccagtgatcagcctgcctcggcctcccaaag
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30109647 193 - 170955103 gctcactgcaaactccgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggggtgtgccaccatgcctggctaatttttgtattttttagtagagacagggtttcaccatattggccagcctggtctt-gaactcctgacctt--gtgatccatccacctcaacctcccaaag
i macFas5.chr4             C 0 I 364
s cerAty1.NW_012002535v1     458325 194 -    863181 gctcactgcaacttctgcctcccaggttcaagcgattctcctgcttcagcctcccaagtagctgggattacaggggtgtgccaccatgcccggctaatttttgta-tttttagtagagacagggtttcaccatgttgatcaggctggtgtt-gaactcctgacctccagtgatcagcccgccttggcctctcaaag
i cerAty1.NW_012002535v1   I 77 C 0
s chlSab2.chr17            29608604 194 -  71996105 gctcactgcaacctccgcctcccaggttcaagcgattctcctgcttcagcctcccaagtagctgggattacaggggtgtgccaccatgcccggctaatttttgta-tttttagtagagacagggtttcaccatgttgatcaggctggtgtt-gaactcctgacctccagtgatcagcccgccttagcctctcaaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     317828 187 -    735854 gctcactgcaacctccgcctcccaggttcaagcgattctcctgtctcagcctcccaagtagctgggattacaggggtgtgccaccatggccggctaatttttgta-tttttagtagaga-------tcaccatgttggtcaggctggtgtt-gaactcctgacctccagtgatcagcccgccttggcctctcaaag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     246116 194 -   1829203 gctcactgcaacctccgcctcccaggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggggtgtgccaccatgcccggctaatttttgta-tttttagtagagacagggtttcaccatgttgatcaggctggtgtt-gaactcctgacctccagtgatcagcctgccttggcctctcaaag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30439883 194 + 171630274 gctcactgcaacctccacctcccaggttcaagtgattctcctgcctcagcctcccaagtagctgagattacaggcatgtgtcaccacacctggccaatttttgta-tttttagtagagatgcggtttcaccatgttgatcaggctgatgtc-aaactcctgacctccagtgatcagcccacctcggcttcctaaag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           251472 194 +    515838 gctcactgcaacctccacctcccaggttcaggtgatcctcctgcctcagcctcccaagtagccaggattacaggcatgcgtcaccatgcctggctaatttttgta-tttttagtagagatggggtttcaccatgttgatcaggctagtgtc-aaactcctgacctccagtgatcagcccacctcggcttcctgaag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     880145 194 -   1771730 gctcactgcaatctccacctcccaggttcaagtgatcctcctgcctcagcctcccaagtagctgggattacaggcatgcgtcaccacgcctggctaatttttgtg-tttttagtagagatggggtttcaccatgttcatcaggcgggtgtc-aaactcctggcctccagtgatcagcccaccttggcatcttaaag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      56126 194 -    486031 gctcactgcaacctccacctcccaggttcaagtgatcctcctgcctcagcctcccaagtagctgggattacaggcatgcgtcaccacacctggctaatttttgta-tttttagtagagatggggtttcaccatgttgatcaggctggtgtc-aaactcctgacctccagtgatcagcccacctcggcttcctaaag
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142114  33 -   1411461 I
e canFam3.chr35            26326465 195 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=195579.000000
s hg38.chr6_GL000254v2_alt  1463322 36 +   4827813 tgctgggattacaggcatgagtcacagcacttagcc
s panTro5.chr6             30332784 36 + 175400573 tgctgggattacaggcatgagtcacagcacttagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30567144 36 + 173848474 tgctgggattaccggcatgagtcacagcacttagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     274191 36 +   2037526 tgctgggattacaggcatgagtcacagcacttagcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941361 36 + 122973662 tgctgggattacaggcatgagtcacggcacttagcc
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     458519 36 -    863181 tgctgggattacaggcgtgagtcactgcacttagcc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29608798 36 -  71996105 tgctgggattacaggcgtgagtcactgcacttagcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     318015 36 -    735854 tgctgggattacaggcgtgagtcactgcacttagcT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     246310 36 -   1829203 tgctgggagtacaggcatgagtcactgcacttagcc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30440077 34 + 171630274 tgctgggattacaggcatgagccaTGGTG--TGGCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           251666 34 +    515838 tgctgggattacaggcatgagccaccATG--TGGCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     880339 34 -   1771730 tgctgggattacaggcgtgagccaccgtg--cGGCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      56320 34 -    486031 tgctggcattacaggcgtgagccactgtg--TGGCT
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142114 33 -   1411461 I
e canFam3.chr35            26326465 195 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109840 364 - 170955103 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=3678.000000
s hg38.chr6_GL000254v2_alt  1463358 2 +   4827813 -AT
s panTro5.chr6             30332820 2 + 175400573 -AT
i panTro5.chr6             C 0 I 1
s panPan2.chr6             30567180 2 + 173848474 -AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     274227 2 +   2037526 -AT
i gorGor5.CYUI01015528v1   C 0 I 1
s nomLeu3.chr1a            74941397 2 + 122973662 -GT
i nomLeu3.chr1a            C 0 I 1
s cerAty1.NW_012002535v1     458555 2 -    863181 -GT
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29608834 2 -  71996105 -GT
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1     318051 2 -    735854 -GT
i manLeu1.NW_012107142v1   C 0 I 1
s colAng1.NW_012115577v1     246346 2 -   1829203 -GT
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30440111 2 + 171630274 -AT
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           251700 2 +    515838 -AT
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     880373 2 -   1771730 -AT
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496901v1      56354 2 -    486031 -GT
i aotNan1.NW_018496901v1   C 0 I 1
s canFam3.chr35            26326660 2 +  26524999 aa-
i canFam3.chr35            I 195 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142114 33 -   1411461 I
e otoGar3.GL873550           293809 242 +  18854210 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109840 364 - 170955103 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=279186.000000
s hg38.chr6_GL000254v2_alt  1463360 32 +   4827813 AAAAAAGTTCTGTTTAAAATACCAGAATGATT
s panTro5.chr6             30332823 32 + 175400573 AAAAAAGTTCTGTTTAAAATACCAGAATGATT
i panTro5.chr6             I 1 C 0
s panPan2.chr6             30567182 32 + 173848474 AAAAAAGTTCTGTTTAAAATACCAGAATGATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     274230 32 +   2037526 AAAAAAGTTCTGTTTAAAATACCAGAATGATT
i gorGor5.CYUI01015528v1   I 1 C 0
s nomLeu3.chr1a            74941400 32 + 122973662 AAAACAGTTCTGTTTAAAATACCAGAATGATT
i nomLeu3.chr1a            I 1 C 0
s cerAty1.NW_012002535v1     458558 32 -    863181 AAAACAGTTCTGTTTAAAATACCAGAATGATT
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29608837 32 -  71996105 AAAACAGTTCTGTTTAAAATACCAGAATGATT
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1     318054 32 -    735854 AAAACAGTTCTGTTTAAAATACTGGAATAATT
i manLeu1.NW_012107142v1   I 1 C 0
s colAng1.NW_012115577v1     246349 32 -   1829203 AAAACAGTTTTGTTTAAAATACCAGAATGATT
i colAng1.NW_012115577v1   I 1 C 0
s calJac3.chr4             30440114 32 + 171630274 AAAACAGCTCTGTTTAAAATACCAGAATGATT
i calJac3.chr4             I 1 I 62
s saiBol1.JH378341           251703 32 +    515838 AAAACAGTTCTGTTTAAAATACCAGAATGATT
i saiBol1.JH378341         I 1 I 55
s cebCap1.NW_016107755v1     880376 32 -   1771730 AAAACAGTTCTGTTTAAAATACCAGAATGATT
i cebCap1.NW_016107755v1   I 1 I 61
s aotNan1.NW_018496901v1      56357 32 -    486031 AAAACAGTTCTGTTTAAAATACCAGAATGATT
i aotNan1.NW_018496901v1   I 1 I 55
s proCoq1.NW_012149775v1     142147 32 -   1411461 AAAACAGTTCTGTTTAAAATACCTTAATGATT
i proCoq1.NW_012149775v1   I 33 C 0
s canFam3.chr35            26326662 32 +  26524999 aaaaCAGCTCTGTTTAAAATACCTTGATGGTT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e otoGar3.GL873550           293809 242 +  18854210 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109840 364 - 170955103 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=44803.000000
s hg38.chr6_GL000254v2_alt  1463392 6 +   4827813 AAAATG
s panTro5.chr6             30332855 6 + 175400573 AAAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30567214 6 + 173848474 AAAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     274262 6 +   2037526 AAAATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941432 6 + 122973662 AAAATG
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     458590 6 -    863181 AAAATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29608869 6 -  71996105 AAAATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     318086 6 -    735854 AAAATG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     246381 6 -   1829203 AAAATG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30440208 6 + 171630274 AAGATG
i calJac3.chr4             I 62 C 0
s saiBol1.JH378341           251790 6 +    515838 AAGATG
i saiBol1.JH378341         I 55 C 0
s aotNan1.NW_018496901v1      56444 6 -    486031 AAGATG
i aotNan1.NW_018496901v1   I 55 C 0
s proCoq1.NW_012149775v1     142179 6 -   1411461 AAAATA
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr35            26326694 6 +  26524999 AAAATG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e otoGar3.GL873550           293809 242 +  18854210 I
e cebCap1.NW_016107755v1     880408 61 -   1771730 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109840 364 - 170955103 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=157313.000000
s hg38.chr6_GL000254v2_alt  1463398 23 +   4827813 TTTGCTTTCTGTTTGCATGTATA------------------
s panTro5.chr6             30332861 23 + 175400573 TTTGCTTTCTGTTTGCCTGTATA------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30567220 23 + 173848474 TTTGCTTTCTGTTTGCCTGTATA------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     274268 23 +   2037526 TTTGCTTTCTGTTTGCATGTATA------------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941438 23 + 122973662 TTTGCTTTCTGTTTGCATGTATA------------------
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     458596 23 -    863181 TTTGCTTTCTGTTTGCATGTATA------------------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29608875 23 -  71996105 TTTACTTTCCGTTTGCATGTATA------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     318092 23 -    735854 TTTGCTTCCTGTTTGCATGTATA------------------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     246387 23 -   1829203 TTTGCTTTCTGTTTGCATGTATA------------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30440214 21 + 171630274 TTTACTT--TGTTTGCATGTATA------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           251796 23 +    515838 TTTACTTTCTGTTTGCATATATA------------------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     880469 23 -   1771730 TTTACTTTCTGTTTGCATGTATA------------------
i cebCap1.NW_016107755v1   I 61 C 0
s aotNan1.NW_018496901v1      56450 23 -    486031 TTTACTTTCTGTTTGCATGTATA------------------
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     142185 23 -   1411461 TTTGCTTTCTATTTGCATGTATA------------------
i proCoq1.NW_012149775v1   C 0 I 147
s canFam3.chr35            26326700 36 +  26524999 -----TTTGTGGGAGCTGGTAGACTGGGTGAGGTTAACATA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e otoGar3.GL873550           293809 242 +  18854210 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109840 364 - 170955103 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=86186.000000
s hg38.chr6_GL000254v2_alt  1463421 15 +   4827813 TCATCCCATT-AAAAA
s panTro5.chr6             30332884 15 + 175400573 TCATCCCATT-AAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30567243 15 + 173848474 TCATCCCATT-AAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     274291 15 +   2037526 TCATCCCATT-AAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941461 15 + 122973662 TCATCCCATT-AAAAA
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     458619 16 -    863181 TCATCCCGTTAAAAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29608898 16 -  71996105 TCATCCCGTTAAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     318115 16 -    735854 TCATCCCGTTAAAAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     246410 16 -   1829203 TCATCCCGTTAAAAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30440235 15 + 171630274 TGATCCCGTT-AAAAA
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           251819 15 +    515838 TGATCCCATT-AAAAA
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     880492 15 -   1771730 TGATCCCATT-AAAAA
i cebCap1.NW_016107755v1   C 0 I 304
s aotNan1.NW_018496901v1      56473 15 -    486031 TGATCCCATT-AAAAA
i aotNan1.NW_018496901v1   C 0 I 1
s canFam3.chr35            26326736 15 +  26524999 TGACCCCACT-TAGAG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142208 147 -   1411461 I
e otoGar3.GL873550           293809 242 +  18854210 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109840 364 - 170955103 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=15972.000000
s hg38.chr6_GL000254v2_alt  1463436  4 +   4827813 ------TGAG-
s panTro5.chr6             30332899  4 + 175400573 ------TGAG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30567258  4 + 173848474 ------TGAG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     274306  4 +   2037526 ------TGAG-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941476  4 + 122973662 ------TAAG-
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     458635  4 -    863181 ------TAAG-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29608914  4 -  71996105 ------TAAG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     318131  4 -    735854 ------TAAG-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     246426  4 -   1829203 ------TAAG-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30440251  4 + 171630274 ------TAAG-
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           251835  4 +    515838 ------TAAG-
i saiBol1.JH378341         I 1 C 0
s aotNan1.NW_018496901v1      56489  4 -    486031 ------TAAG-
i aotNan1.NW_018496901v1   I 1 C 0
s canFam3.chr35            26326751 11 +  26524999 GGAGGATAGGG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142208 147 -   1411461 I
e otoGar3.GL873550           293809 242 +  18854210 I
e cebCap1.NW_016107755v1     880507 304 -   1771730 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109840 364 - 170955103 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=542779.000000
s hg38.chr6_GL000254v2_alt  1463440  95 +   4827813 TTTAAAGTTTTCTATAGAGA-TATATACATGCAAACAGAAAG--------------AAAAAAAAATAGGAGGGCCATCAAAATAAATGGAGCAACAAAGTTCAGTT-----------TATA
s panTro5.chr6             30332903  96 + 175400573 TTTAAAGTTTTCTATAGAGATTATATACATGCAAACAGAAAG--------------AAAAAAAAATAGGAGGGCCATCAAAATAAATGGAGCAACAAAGGTCAGTT-----------TATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30567262  95 + 173848474 TTTAAAGTTTTCTATAGAGATTATATACATGCAAACAGAAAG---------------AAAAAAAATAGGAGGGCCATCAAAATAAATGGAGCAACAAAGGTCAGTT-----------TATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     274310  96 +   2037526 TTTAAAGTTTTCTATAGAGATTATATACATGCAAACAGAAAG--------------AAAAAAAAATAGGAGGGCCATCAAAATAAATGGAGCAACAAAGGTCAGTT-----------TATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941480  94 + 122973662 TTTAAAGTTTTCTATAGAGATTATATACATGCAAACAGAAAG----------------AAAAAAATAGGAGGGCCATCAAAATAAATGGAGCAACAAAGGTCAGTT-----------TATA
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     458639 116 -    863181 TTTAAAGTTTTCTATGGAGATTATATACAGGCAAACCGAAAGC-----aaaaaaaaaaaaaaaaaTTGGAGGGCCATAAAAATAAATGCAGCAACAAAGGTCAGTCAATATAACATGTATA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29608918 110 -  71996105 TTTAAAGTTTTCTATAGAGATTATATACAGGCAAACCGAAAGC-----------AAAAAAAAAAATTGGAGGGCCAAAAAAATAAATGGAGCAACAAAGGTCAGTCAATATAACATGTATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     318135 117 -    735854 TTTAAAGTTTTCTATGGAGATTATATACAGGCAAACTGAAAGC----aaaaaaaaaaaaaaaaaaTTGGAGGGCCATAAAAATAAATGGAGCAACAAAGGTCAGTCAATATAACATGTATA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     246430 105 -   1829203 TTTAAAGTTTTCTATAGAGATTATATACATGCaaacagaaagc----aaaacaaaaaaaaaaaaaTTGGAGGGCCATAAAAATAAATGGAGCAACAAAGGTCAGTTAA------------A
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30440255 107 + 171630274 TTTAAAGTTTTGTATAGAGATCATATGCATGCAAACAGAAAGC---aaaaaaaaaaaaaaaaaaaaGGTGGGGCCATGCAAATAAATGGAGTAACAAAGGTCAGTT-----------TTTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           251839 110 +    515838 TTTAAAGTTTTGTATAGAGATCATATACATGCAAACAGAAAGCaaaaaaaaaaaaaaaaaaaaaaaaGTGGGGCCATACAAATAAATGGAGCAACAAAGGTCAGTT-----------TTTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     880811  99 -   1771730 TTTAAAGTTTTGTATAGAGATCATATACATGCAAACAGAAAG-----------AAAAAAGAAAAAAAGTGGGGCCATACAAATAAATGGAGCAACAAGGGTCAGTT-----------TTTA
i cebCap1.NW_016107755v1   I 304 C 0
s aotNan1.NW_018496901v1      56493 101 -    486031 TTTAAAGTTCTGTAGAGAGATCATATGCATGCAAACAGAAAGC---------AAAAAAAAAAAAAAGGTGGGGCCATACAAATAAATGGAGCAACAAAGGTCAGTT-----------TTTA
i aotNan1.NW_018496901v1   C 0 C 0
s canFam3.chr35            26326762  88 +  26524999 TTTAAAGTCCTTGATAAAAATTAGATACATGCAAACAAGGAGC----------AAGGAAAAACAAT--------CCTAAAAATAAATGTCATAA----GGTCAGTT-----------ACTA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142208 147 -   1411461 I
e otoGar3.GL873550           293809 242 +  18854210 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109840 364 - 170955103 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=804278.000000
s hg38.chr6_GL000254v2_alt  1463535 102 +   4827813 TATAGCAGTCAATATAACATTGGGCTGAATTGCTCAACCAAAGGATCAGTCATGAGATTAAAAACCCCAACAAAATGTAAAGCTCCCTTTCTTCCTTAGAGA
s panTro5.chr6             30332999 102 + 175400573 TATAGCAGTCAATATAACACTGGGCCGAATTGCTCAACCAAAGGATCAGTCATGAGATTAAAAACCCCAACAAAATGTAAAGCTCCCTTTCTTCCTTAGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30567357 102 + 173848474 TATAGCAGTCAATATAACACTGGGCCGAATTGCTCAACCAAAGGATCAGTCATGAGATTAAAAACCCCAACAAAATGTAAAGCTCCCTTTCTTCCTTAGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     274406 102 +   2037526 TATAGCAGTCAATATAACATTGGGCTGAATTGCTCAACCAAAGGATCAGTCATGAGATTAAAAACCCCAACAAAATGTAAAGCTCCCTTTCTTCCTTAGAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941574 102 + 122973662 TATAGCAGTCAATATAACATTGGGCTGAATTGCTCAACCAAAGGATCAGTCATGAGATTAAAAACCCCAACAAAATGTAAAGCTTCATTTCTTCCTTAGAGA
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     458755 102 -    863181 TATAGCAGTCAATATAACACTGGGCTGAATGGCTCAACCAAAGGATCAGTCATGAGATTAAAAATCCCAACAAAATGTAAAGCTCCCTTTCTTCCTTAGAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29609028 102 -  71996105 TATAGCAGTCAATATAACACTGGGCTGAATTGCTCAACCAAATGATCAGTCATGAGATTAAAAATCCCAACAAAATGTAAAGCTCCCTTTCTTCCTTAGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     318252 102 -    735854 TATAGCAGTCAATATAACACTGGGCTGAATTGCTCAACCAAAGGATCAGTCATGAGATTAAAAATCCCAACAAAATGTAAAGCTCCCTTTCTTCCTTAGAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     246535 102 -   1829203 TATAGCAGTCAATATAACACCGGGCTGAATGGCTCAACCAAAGGATCAGTCATGAGATTAAAAATCCCAACAAAATGTAAAGCTCCCTTTCTTCCTTAGAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30440362 102 + 171630274 TATGGCAGTCAATACAACACTGGGCTGAATTGCCCAACCAAAGGATCAGCTGTGAGATTAAAAACCCCAACAAAATGTAAAGCTCCCTTCTTCCCTTAGAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           251949 102 +    515838 TATGGCAGTCAATACAAGACAGGGCTGAATTGTTCAACCAAAGGATCAACCGTGAGATTAAAAACCCCAACAAAATGTAAAGCTCCCTTCTTCCCTTGGAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     880910  99 -   1771730 TATGGCAGTCAATACAACACTGGGCTGAATTGCTCA---AAAGGATCAGCCGTGAGATTAAAAACCCCAACAAAATGTAAAGCTCCCTTATTCCCTCAGAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      56594 102 -    486031 TATGGCAGTCAATACAACACTTGGCTGAATTGCTCAACCAAAGGATCAGCCATGAGATTAAAAACCCCAAGAAAATGTAAAGCTCCCTTCTTCCCTTAGAGA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     142355 101 -   1411461 TATAGCATTCAATAT-ACATTGCGCTGAATCACCCAACAGAAGGATCAGCCATAAGATTAAGAAACCCAACAAAATGTAAAGTTCCCTTTCTTCTTTAGAGA
i proCoq1.NW_012149775v1   I 147 I 2344
s canFam3.chr35            26326850  95 +  26524999 -----CATGCAATGTAACA-AGGACCAAATTGCTCAAAAATGGGATCTGTAATGGGATTAAAAAACCCAAC-ACCTGTGATGTTCCCTTTTTTCCCTGGAGA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e otoGar3.GL873550           293809 242 +  18854210 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109840 364 - 170955103 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=102440.000000
s hg38.chr6_GL000254v2_alt  1463637 17 +   4827813 AACCCATTAAAACATAG
s panTro5.chr6             30333101 17 + 175400573 AACCCATTAAAACATAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30567459 17 + 173848474 AACCCATTAAAACATAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     274508 17 +   2037526 AACCCATTAAAACATAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941676 17 + 122973662 AACCCATTAAAACATAG
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     458857 17 -    863181 AACCCATTAAAACATAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29609130 17 -  71996105 AACCCATTAAAACATAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     318354 17 -    735854 AACCCATTAAAACATAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     246637 17 -   1829203 AACCCATTAAAACATAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30440464 17 + 171630274 AACCCATTAAAAGATAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           252051 17 +    515838 AACCCATTAAAAGATAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     881009 17 -   1771730 AACGCATTAAAAGATAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      56696 17 -    486031 AACCCATTAAAAGATAT
i aotNan1.NW_018496901v1   C 0 I 308
s canFam3.chr35            26326945 13 +  26524999 GATGCATTAGCAG----
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e otoGar3.GL873550           293809 242 +  18854210 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109840 364 - 170955103 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=1219210.000000
s hg38.chr6_GL000254v2_alt  1463654 197 +   4827813 -------------------------AAGCA----------------------TAAATCCA-----------------------------GAGAT--------------------------------------AGTTTAAGGGCTGCTGTGCCTGTGCAGATG----GGAGAACCTCATGGTGGTCTCACTCCTCTCCCTCTGCCAGGAGAAACTGCAGT-ctcctaa-caccgcgactccaac----t----taggagcaagggcag-ggggaagaagctgaaaaggcctggccttcacttgactcagttatccaga--------ttatttaaa
s panTro5.chr6             30333118 197 + 175400573 -------------------------AAGCA----------------------TAAATCCA-----------------------------GAGAT--------------------------------------AGTTTAAGGGCTGCTGCGCCTGTGCAAATG----GGAGAGCCTCATGGTTGTCTCACTCCTCTCCCTCTGCCAGGAGAAACTGCAGT-CTCCTAA-CACCGCGACTCCAAC----T----TAGGAGCAAGGGCAG-GGGGAAGAAGCTGAAAAGGCCTGGCCTTCACTTGACTCAGTTATCTAGA--------TTATTTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30567476 197 + 173848474 -------------------------AAGCA----------------------TAAATCCA-----------------------------GAGAT--------------------------------------AGTTTAAGGGCTGCTGCGCCTGTGCAAATG----GGAGAGCCTCATGGTGGTCTCActcctctccctctgccaggagaaactgcagt-ctcctaa-caccgcgactccaac----t----taggagcaagggcag-ggggaagaagctgaaaaggcctggccttcacttgactcagttatctaga--------ttatttaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     274525 197 +   2037526 -------------------------AAGCA----------------------TAAATCCA-----------------------------GAGAT--------------------------------------AGTTTAAGGGCTGCTGCGCCTGTGCAAATG----GGAGAACCTCATGGTGGTCTCACTCCTCTCCCTCTGCCAGGAGAAACCGCAGT-CTCCTAA-CACCGCGACTCCAAC----T----TAGGAGCAAGCGCAG-GGGGAAGAAGCTGAAAAGGCCTGGCCTTCACTTGACTCAGTTATGCAGA--------TTATTTAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941693 198 + 122973662 -------------------------AAGCA----------------------TAAATCCA-----------------------------GAGAT--------------------------------------AGTTTAAGGGCTGCTGTGCCAGTGCAAATG----GAAGAACCTCATGACGGTCTCACTCCTCTCCCTCTGCCAGGAGAAACTGCAGTCCTCCTAA-CACTGCGACTCCAAC----T----TAGGAGCAAGCGCAG-AGGAAAGAAGCTGAAAAGGCCTGGCCTTCACTTGACTCAGTTATCTAGA--------TTATTTAAA
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     458874 198 -    863181 -------------------------AAGCA----------------------TAAATCCG-----------------------------GAGAT--------------------------------------AGTTTAAGGGCTGTTGTGCCAGTGCAAATG----GAAGAACCTCATGGTGGTCTCACTcctttccctctgccacgagaaactgcagtcctccaaa-cactgtgactccaac----t----taggagcaagggcag-ggggaagaagctgaaaagacctggccttcacttgactcagttatctaga--------ttatttaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29609147 198 -  71996105 -------------------------AAGCA----------------------TAAATCCA-----------------------------GAGAT--------------------------------------AGTTTAAGGGCTGCTGTGCCAGTGCAAATG----GAAGAACCTCATGGTGCTCTCACTCCTTTCCCACTGCCAGGAGAAACTGTAGTCCTCCTAA-CACCGTGACTCCAAC----T----GAGGAGCAAGGGCAG-GGGGAAGAAGCTGAAAAGACCTGGCCTTAGCTTGACTCAGTTAAGTAGA--------TTATTTAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     318371 198 -    735854 -------------------------AAGCA----------------------TAAATCCG-----------------------------GAGAT--------------------------------------AGTTTAAGGGCTGTTGTGCCAGTGCAAATG----GAAGAACCTCATGGTGGTCTCactcctttccctctgccaggagaaactgcagtcctcctaa-caccgtgactccaac----t----taggagcaagggcag-ggggaagaagctgaaaagacctggccttcacttgactcagttatctaga--------ttatttaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     246654 198 -   1829203 -------------------------AAGCA----------------------TAAATCCA-----------------------------GAAAT--------------------------------------AGTTTAAGGGCTGCTGTACCAGTGCAGATG----GAAGAACCTCATGGTGGTCTCACTCCTTTCCCTCTGCCAGGAGAAACTGCAGTcctcctaa-caccatgactccaac----c----taggagcaagggcag-ggggaagaagctgaaaagacctggccttcacttgactcagttatctaga--------ttatttaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30440481 199 + 171630274 -------------------------CAGCA----------------------GAAATCCA-----------------------------GAGAT--------------------------------------AGTTTAAGGTCTGTTGTGCCAACACGAATG----GAAGAACTTCGTGG---TCTCACTCCTCTCCCTTTGCCAGGAGAAACTGCAGTcctcctaa-taccatgactccagc----ttaggtaggagcaagggcag-ggagaagaagctgaaaagacctggccttcacttgactcagttatctaga--------ttgtttaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           252068 199 +    515838 -------------------------AAGCA----------------------TAAATCCA-----------------------------GAGAT--------------------------------------AGTTTAAGGTCTGTTGTGCCAACACAAATG----GAAGAACCTGATGG---TCTCACTCCTCACCCTCTGCCAGGAGAAACTGCAGTcctcctaa-taccatgactccagc----ttaggtaggggcaagggcag-ggggaagaagctgaaaagacccggccttcacttgactcagttatctgga--------ttgtttaaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     881026 203 -   1771730 -------------------------AAGTA----------------------TAAATCCA-----------------------------AAGAT--------------------------------------AGTTTAAGGTCTGTTGTGCCAACACAAATG----GAAGAACCTTGTGG---TCTCACTCCTCTCCTTCTGCCAGGAGAAGCTGCAGTCCTCCTAA-TACCGTGAATCTACCTTAGTTAGGTAGGAGCAGGGGCAG-GGGGAAGAAGCTGAAAAGACCTGGCCTTCACTTGACTCAGTTATCTAGA--------TTGTTTAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      57021 198 -    486031 -------------------------AAGCA----------------------TAAATCCA-----------------------------AAGAT--------------------------------------AGTTTAAGGTCTGTTGTGCCAACACAAATG----GAAGAACCTCATGG---TCTCACTCCTCTCCCTCTGCCAGGAGAAACTGCAGTCCTCCTGA-TACGGTGACTGCAGC----TTAGGTAGGAGCAAGGGC-G-GTGGAAGAAGCTGAAAAGACCTGGCCTTCACTTGACTCAGTTATCTAGA--------TTGTTTAAA
i aotNan1.NW_018496901v1   I 308 C 0
s canFam3.chr35            26326958 325 +  26524999 AGGCAcctgggtggctcagccaggtaagcgtctgactcttggtctcaggttctgagttcaggccccatgtcaggctccaTGCTGGGTGTGAGATGTGCTTAATAGGTAAATTAGACAAACAGCATGAGCATAAGTCTAGCAGCTGCTGTACCCATGCAGATGGGGTGGATGGTCCCAAGGCAGGCCCACCGGGTTTCCTCTA-TGGGAGAGCCCACAGGCAGCCTCATCGCCCCAGCTCCAAC----C----CAGGTGCTAGCAGGGTGGGGAGGAGGCCCAAAACATCTGGTCCTCACTTGACTTACTTACCTAAAGAGATTAGttatttaaa
i canFam3.chr35            C 0 I 2518
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e otoGar3.GL873550           293809 242 +  18854210 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109840 364 - 170955103 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=1122857.000000
s hg38.chr6_GL000254v2_alt  1463851 192 +   4827813 TTATTGGATTGGCCGGTGGAatggtt--aattttatatgtcaacttggctagg--ccgcgctacccag-ttatttgCTATGGTTATGCTGCTTCTACAATAAA-TGACATCAGA-GAAAAGT-GGTTGAGAGAAAAGTGGCAAGAAGAAATAAAAATATGCTTGGGTTTGAGGATCTAAATGCC-CCCATCAGAACACATC
s panTro5.chr6             30333315 192 + 175400573 TTATTGGATTGGCCGGTGGAatggtt--aattttatatgtcaacttggctagg--ccgcgctacccag-ttatctgCTATGGTTATGCTGCTTCTACAATAAA-TGACATCAGA-GAAAAGT-GGTTGAGAGAAAAGTGGCAAGAAGAAATAAAAATATGCTTGGGTTTGAGGATCTAAATGCC-CCTATCAGAACACATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30567673 192 + 173848474 ttattggattggCCGGTGGAatggtt--aattttatatgtcaacttggctagg--ccgcgctacccag-ttatctgCTATGGTTATGCTGCTTCTACAATAAA-TGACATCAGA-GAAAAGT-GGTTGAGAGAAAAGTGGCAAGAAGAAATAAAAATATGCTTGGGTTTGAGGATCTAAATGCC-CCTATCAGAACACATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     274722 192 +   2037526 TTATTGGATTGGCCGGCAGAatggtt--aattttatacgtcaacttggctagg--ctgcgctacccag-ttatttgCTATGGTTATGCTGCTTCTACAATAAA-TGACATCAGA-GAAAAGT-GGTTGAGAGAAAAGTGGCAAGAAGAAATAAAAATATGCTTGGGTTTGAGGATCTAAATGCC-CCTATCAGAACACATC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74941891 192 + 122973662 TTATGGGATTGGCCtgtggaatggtt--aattttatatgtcaacttggctagg--ccgcggtacccag-ttatttgCTATGGTTATGCTGCTTCTACAATAAA-TGACATCAGA-GAAAAGT-GGTTGAGAGAAAAGTGGCAAGAAGAAATAAAAATATGCTTGGGTTTGAGGATCTAAATGCC-CCTATCAGAACACATC
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     459072 200 -    863181 TTATTGGATTGGCCtgtggaatggtttaatttttatatgtcaacttggctaggccccgcgctacccagCGCATTTGCTATGGTTATGCTGCTTCTACAATAAGTTGACATCAGAGGAAAAGTGGGTTGAGAGAAAAGTGGCAAGAAGAAATAAAAATATGC-TGGGTTTGAGGATCTAAATGCCGCCTATCAGAACACATC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29609345 182 -  71996105 TTATTGGATTGGCCTGGGGAatggtt--aattttatatgtcaacttggctagg--ccgcgctacccag-gcatttgCTATGGTTATGCTGCTTCTACGATAAG-TGACATCAGA-GAAAAGT-AGTTGAGAGAAAAGTGGCAAGAAGAAATAAAAATATGCTTGGGTTTGAGGAT-----------GTATCAGAACACATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     318569 192 -    735854 ttattggattggcctgtggaatggtt--aattttatatgtcaacttggctagg--ccgcgctacccag-gcatttgCTATGGTTATGCTGCTTCTACAATAAG-TGACATCAGA-GAAAAGT-GGTTGAGAGAAAAGTGGCAAGAAGAAATAAAAATATGCTTGGGTTTGAGGATCTAAATGCC-CCTATCAGAACACATC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     246852 192 -   1829203 TTATTGGATTGGCCtgtggaatggtt--aattttatatgtcaacttggctagg--ccgcgctacccag-gcatttgCTATGGTTATGCTGCTTCTACAACAAG-TGACATCAGA-GAAAAGT-GGTTGAGAGAAAAGTGGCAAGAAGAAATAAAAATATGCTTGGGTTTGAGGATCTAAACACC-CCTATCAGAACACATC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30440680 189 + 171630274 TTATTGGATTGACC-GTGAAatgact--aataccatgtgtcaacttgtctggg--ctctggaacctgg-gtatttgCTGTAGTTATGCTACTTGAGCAATAAA-TGACATCAGA-GAAAAG--GATTGAGAGAAAACTGGCAAGAAGAAATAAACATATGCTTGCATTT-AAGATCTAAATGCC-CCTATCAGAACACATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           252267 191 +    515838 TTATCGGACCGGCC-ATGGAatgact--aatttcatgtgtcaatttgtctggg--ctgtggaacccgg-gtgtttgCTATGGTTATGCTACTTGAACAATAAA-TGACATCAGA-GAAAAGT-GGTTGAGAGAAAACTGGCAAGAAGAAATGAACATATGCTTGCATTTGAGGGTCTAAACGCC-CCTATCAGAACACATC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     881229 191 -   1771730 TTATTGGATTGGCC-Gtggaatggct--aatttcatgtgtcaacttgtctggg--ctgtggaacccgg-gtatttgCTATGGTTATGCTGCTTGAACAATAAA-TGACATCAGA-GAAAAGT-GGTTGAGAGAAAAGTGGCAAGAAGAAATAAAGATATGCTTGCATTTGAGGATCTAAACGCC-CCTATCAGAACACATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      57219 190 -    486031 TTATTGGATTGGCC-GTGGAatggct--aatttcatgtgtcaacttgtctggg--ctgcggaacccgg-gtatttgCTATGGTTACGCTACTTGGACAATAAA-TGACATCAGA-GAAAAGT-GGTTGAGAGAAAAGTGGCAAGAAGAAATAAACA-ATGCTTGCATTTGAGGATCTAAACGCC-CCTATCAGAACACATC
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I
e otoGar3.GL873550           293809 242 +  18854210 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109840 364 - 170955103 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=2002360.000000
s hg38.chr6_GL000254v2_alt  1464043 310 +   4827813 AG----ACT-ATGTAATATTCTTGTACCACAGAAGTACCGTGTCC----AGAGCCTAACACAGAGCTCT--------TGGTAACT---CACtctgggaagcgcattttaataaaggtaaccgcaaactggactgccttgaga--ggaggtcacttggatggc-aagcagttttgaaatctcat-t---------tcaggaggcat-gaggaggatctg--gttggccctgagagactcagg-agtaca-gagtg-ctgcctt-cCAGATGCGGGGAGGTTTGTGGTGGA-TGTCTGTCTCTCCCATGGT-CTCAACACTTCTATGCAGATTTCCGCgggctgaattgtgtcc
s panTro5.chr6             30333507 302 + 175400573 AG----ATT-ATGTAATATTCTCGTACCACAGAAGTACCATGTCC----AGAGCCTAACACAGAGCTCT--------TGGTAACT---CACtctgggaaccgcattttaataaaggtaaccgcaaactggactgccttgaga--ggaggtcacttggatggc-aagcagttttgaaatctcat-t---------tcaggaGGCAT-GAGGAGGAT----------CCCTGAGAGACTCAGG-AGTACA-GAGTG-CTGCCTT-CCAGATGCGGGGAGGTTTGTGGTGGA-TGTCTGTCTCTCCCATGGT-CTCAACACTTCTATGCAGATTTCCGCgggctgagttgtgtcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30567865 302 + 173848474 AG----ATT-ATGTAATATTCTCGTACCACAGAAGTACCATGTCC----AGAGCCTAACACAGAGCTCT--------TGGTAACT---CACtctgggaaccgcattttaataaaggtaaccgcaaactggactgccttgaga--ggaggtcacttggatggc-aagcagttttgaaatctcat-t---------tcaggaGGCAT-GAGGAGGAT----------CCCTGAGAGACTCAGG-AGTACA-GAGTG-CTGCCTT-CCAGATGCGGGGAGGTTTGTGGTGGA-TGTCTGTCTCTCCCATGGT-CTCAACACTTCTATGCAGATTTCCGCgggctgagttgtgtcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     274914 309 +   2037526 AG----ACT-ATGTAATATTCTTGTACCACAGAAGTACCATGTCC----AGAGCCTAACACAGAGCTCT--------TGGTAACT---CACtctgggaaccgcattttaataaaggtaaccgcaaactggactgccttgaga--ggaggtcacttggatggc-aagcagttttgaaatctcat-t---------tcaggaggcat-gaggaggatctg--gttggccctgagagactcagg-agtaca-gagtg-ctgcctt-ccagatgcggggaggtttgtggtgga-TGTCTGTCTCT-CCATGGT-CTCAACACTTCTATGCAGATTTCCGCgggctgaattgtgtcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74942083 309 + 122973662 AG----ACT-ATGTAATATTCTTGTACCACAGAAGTACCCTGTCC----AGAGCCTAACACAGAGCTCT--------TGGTAACT---CACtctgggaaccacattttaataaaggtacccgcaaactgggctgccttgaga---gagggcacttggatggc-aagcagctttgaaatctcat-t---------tcaggaggcat-gaggaggatctg--gttggccctgagagactcagg-agtaca-gagtg-ctgcctt-ccagatgcggggaggtttgtggtgga-TGTCTGTCTCTCCTACGGT-CTCAACACTTCTATGCAGATTTCtgtgggctgaattgtgtcc
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     459272 321 -    863181 AG----ACTAATGTCATATTCTTGT---AAAGAAGTACTGTGGCCTAAAAGAGCCTAACACAGACCTCT--------TGGTAACT---CACtctgggaaccacattttaataaaggtacccgcaaaatgggac-ccttgagaagggagggcacttggatggcaaagcagctttaaaatcccatct---------tcaggaggcatggaggaggatctg--gttgacctggagagactcaggaagtaca-gagtgcctgccttcCCAGATGCGGGGAGGTTTGTGGTGGATTGTCTGTCTCTCCCATGGTCCTCAACACTTCTCTTCAGATTTCCGCCGGCTGAATTGTGTCC
i cerAty1.NW_012002535v1   C 0 I 1118
s chlSab2.chr17            29609527 311 -  71996105 AG----ACT-ATGTCATATTCTTATACCACAGAAGTACTGTGCCC----AGAGCCTAACACAGACATCT--------TGGTAACT---CACtctgggaaccacattttaataaaggtacccgcaaactggactgccttgaga--ggagggcacttggatggc-aagcagctttgaaatcccat-t---------tcaggaggcatggaggaggatctg--gTTGACCCTGAGAGACTCAGG-AGTACA-GAGTG-CTGCCTT-CCAGATGCGGGGAGGTTTGTGGTGGA-TGTCTGTCTCTCCCATGGT-CTCAACACCTCTCTGCAGATTTCCGCAggctgaattgtgtcc
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012107142v1     318761 311 -    735854 AG----ACT-ATGTCATATTCTTGTACCACAGAAGTACTGTGCCC----AGAGCCTAACACAGACCTCT--------TGGTAACT---CACtctgggaaccacattttaataaaggtacccgcaaactggactgccttgaga--ggagggcacttggatggc-aagcagctttaaaatcccat-t---------tcaggaggcatagaggaggatctg--gttgaccctgagagactcagg-agtaca-gagtg-ctgcctt-ccagatgtggggaggtttgtGGTGGA-TGTCTGTCTCTCCCATGGT-CTCAACACTTCTCTTCAGATTTCCGCCggctgaattgtgtcc
i manLeu1.NW_012107142v1   C 0 I 2
s colAng1.NW_012115577v1     247044 311 -   1829203 AG----ACT-ATGTCATATTCTTGTACCACAGAAGTACTGTGCCC----AGAGCCTAACACAGACCTCT--------TGGTAACT---CACtctgggaaccacattttaataaaggcacccgcaaactggactgccttgaga--ggagggcacttggatggc-aagcagctttgaaatcccat-t---------tcaggaggcacggaggaggatctg--gTTGACCCTGAGAGACTCAGG-AGTACA-GAGTG-CTGCCTT-CCAGATGCGGGGGGGTTTGTGGTGGA-TGTCTGTCTCTCCCACGGT-CTCAACACTTCTATGCAGATTTCCGCCggctgaattgtgtcc
i colAng1.NW_012115577v1   C 0 I 2
s calJac3.chr4             30440869 312 + 171630274 AGACTCACT-ATGTAATATTCTTGTACCACAGAAGTACTGTGCCC----AGAGCCTAAAACAGAGCTCC--------CTATAACTCCTCTCtctggga---acattttaatcaaggtacccgcaaactggactgccttgaga--ggagggcacttggatgac-aagcagctttgaaatcccat-t---------tcaggaggcatggaggaggatct---atggGCCCTGAGGGACTCAGG-AGTACA-GAGCG-CAGCCTT-CCAGATGCTGGGAGGTTTGTGGTGGA-TGGCTGTCTCGCCCATGGT-GTCA--ACTTCTATGCAGATTTCCTtgggttgaattgtgtcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           252458 311 +    515838 AG----ACT-ACGTAATATTCTTGTACCACGGAAGTACTGTGCCC----AGAGTCTAAAACAGAGCTCT--------CTGTAACTCCTCACtctgggaaccacattttaatcaaggtacccacaaactggactgccttgaga--tgagggcacttggatgac-aagcagctttgaaatcccat-t---------tcaggaggcatggaggaggatct---gtggGCCCTGAGGGACCCAGG-AGTACA-GAGCG-CGGCCTT-CCAGATGCTGGGAGGTTTGTGGTGGA-TGGCTGTCTCACCCATGGT-CTCA--ACTTCTATGCAGATTTCCAAgggctgaattgtgttc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     881420 309 -   1771730 AG----GCT-ACATAATATTCTTGTACCACAGAAGTACTGTGCCC----AGAGCCTAAAACAGAGCCCT--------CTGTAACTCCCCACtctgggagccacattttaatcaaggtacccgcaaactggactgctttgaga--ggagggcacttggatgac-aagcagctttgaaattccat-t---------tcaggaggcacggAGGAGGATCA---GTGGGCCCTGAGGGGCTCAGG-AGT--A-GAGTG-CGGCCTT-CCAGATGCTGGGAGGTTTGTGGTGGA-TGGCTGTCTCGCCCATGGT-GTCA--ACTTCTATGCAGATTTCCGCgggctgaattgtgtcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      57409 311 -    486031 AG----ACT-ACGTAATATTCTTGTACCACAGAAGTACTGTGCCC----AGAGCCTAAAACAGAGCGCT--------CTGTAACTCCTCACtctgggaaccacattttaatcaaggtacccgcaaactggactgccttgaga--ggagggcacttggatgac-aagcagctttgaaatcccat-t---------tcaggagacatggaggaggatct---gtggGCCCTGAGGGACCCAGG-AGTACA-GAGTG-CAGCCTT-CCAGATGCTGGGAGGTTTGTGGTGGA-TGCCTGTCTCGCCCACAGT-GTCA--ACTTCTATGCAGATTTCCGAggactgaattgtgtcc
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           294051 333 +  18854210 ag----ccT-ATGTTATAGTCTTGTAACACAGAAATAGTTTGCCC----AGAGCCCAGCACAGAACTCTTATAAGAGTTATAACACCTCATTCTGGGAAC-ACATTTTGATAAAGATATGCACATAACGGGCTGCCTTGAGA--GAAGGCCACTCAGATGCC-AAACTACTTTGAAATCCCAT-TCCTGAAATCCCAGGAGGTGTGGCTGAAGCTCTGATGTTGGCCCTGAGAGAGTCTGG-AATACAGGAGAG-CTGCCTT-CCAAATGCCAGGAGGTCTGTGATGGG-GCTCTGTCCCTCTTATGTT-CTCAACACTTCTGTGCATAGtgttctgggctgaattgtgtcc
i otoGar3.GL873550         I 242 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109840 364 - 170955103 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=590503.000000
s hg38.chr6_GL000254v2_alt  1464353 100 +   4827813 ctctcacccactgctccaaacttgtatgatgaagccctaactccaagaacctcaaaatgtgactatatttggaaatagggcctttgaa-agttgattaaat
s panTro5.chr6             30333809 100 + 175400573 ctctcacccactgctccaaacttgtatgatgaagccctaactccaagaacctcaaaatgtgactatatttggaaatagggcctttgaa-agttgattaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30568167 100 + 173848474 ctctcacccactgctccaaacttgtatgatgaagccctaactccaagaacctcaaaatgtgactatatttggaaatagggcctttgaa-agttgattaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     275223 100 +   2037526 ctctcacccactgctccaaacttgtatgatgaagccctaactccaagaacctcaaaatgtgactatatttggaaatagggcctttgaa-agttgattaaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74942392 100 + 122973662 ctctcacccactgctccaaacttgtatgatgaagccctaactccaagagcctcaaaatgtgactatatttggaaataaggcctttgaa-agttgattaaat
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            29609840 100 -  71996105 ctctcacccactcctcccaacttgtatgatgaagccctgactccaagaacctcaaaatgtgactatatttggaaatagagcctttaaa-agatgattaaat
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012107142v1     319074 100 -    735854 ctcccatccactcctcccaacttgtatgatgaagccctgactccaagaacctcaaaatgtgactatatttggaaatagagcctttaaa-agatgattaaat
i manLeu1.NW_012107142v1   I 2 C 0
s colAng1.NW_012115577v1     247357 100 -   1829203 ctctcacccactcctcccaacgtgtatgatgaagccctgactccaagaacctcaaaatgtgactatatttggaaatagagcctttaaa-agatgattaaat
i colAng1.NW_012115577v1   I 2 C 0
s calJac3.chr4             30441181  99 + 171630274 ctctcactcactcctccaaacttgtatcatgaagccataactccaaaaacctcagaatgtgactatatttggaaatagggcctttaaa-a-atgattaagt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           252769 100 +    515838 ctctcacccactcctccaaacttgtgtgatgaagccctaactccaaaaacctcagaatgtgactatatttggaaatagggcctttaaa-agatgattaagt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     881729  99 -   1771730 ctctcacccattcctccaaacttgtatgatgaagcc-taactccaaaaacctcagaatgtgactatatttggaaatagggcctttaaa-agatgattaagt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      57720 100 -    486031 ctctcacccactcctccaaacttgtatgatgaagccctaactccaaaaacctcagaatgtgactatatttggaaacagggcctttaaa-agatgattaagt
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           294384  89 +  18854210 -----------ttccccaattttctatgttg-agcactggcccctaatacctaaaaatgtgactgtatttgaacatagagtttttaaagaggtgattaaat
i otoGar3.GL873550         C 0 I 2
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I
e cerAty1.NW_012002535v1     459593 1118 -    863181 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109840 364 - 170955103 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=696161.000000
s hg38.chr6_GL000254v2_alt  1464453 143 +   4827813 tgtcgac--aaagagtcaaactctataaaatattcaaagagatgtattttgagccaaatatgggtggccatggcccatgacacagccctcaggagatcctgagaacatgtgcctgaggtggttagggcacagcctggtttcatac
s panTro5.chr6             30333909 143 + 175400573 tgttgac--aaagagtcaaactctataaaatattcaaagagatgtattttgagccaaatatgggtggccatggcccatgacacagccctcaggagatcctgagaacatgtgcctgaggtggttagggcacagcctggtttcatac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30568267 143 + 173848474 tgttgac--aaagagtcaaactctataaaatattcaaagagatgtattttgagccaaatatgggtggccatggcccatgacacagccctcaggagatcctgagaacatgtgcctgaggtggttagggcacagcctggtttcatac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     275323 142 +   2037526 tgttgac--aaagagtcaaactctataaagtattcaaagagatgtattttgagccaaatgtgggtggccatgg-ccatgacacagccctcaggagatcctgagaacgtgtgcctgaggtggttagggcacagccttgtttcatac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74942492 143 + 122973662 tgttgac--aaagagtcaaactctataaaatattcaaagagatgtattttgagtcaaatatgggtgaccatggcccatgacacagccctcaggagatcctgagaacttgtgcctgaggtggttagggcacagcctggtttcatac
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            29609940 138 -  71996105 tgttgac---aagagtcaaactctataaaatattcaaagagatgtattttgagccaaatatgggtgaccatggcccatgacacagcccttaggagatcccaagaccatgtgctggaggtggttagggcacagcctggttg----c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     319174 138 -    735854 tgttgac---aagagtcaaactctataaaatattcaaagagatgtattttgagccaaatatgggtgaccatggcccatgacacagctcttaggagatcccgagaccatgtgctggaggtggttagggcacagcctggttt----c
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     247457 138 -   1829203 tgttgac---aagagtcaaactctataaaatattcaaagagatgtattttgaaccaaatatgggtgaccagggcccatgacacagcccttaggagatcccgagaccatgtgctggaggtggttagggcacagcctggttt----c
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30441280 131 + 171630274 tgttggtgaaaagagttaaactctgtaaaatattcaaagagatttattctgagccaaatatgggtgaccatggcccgtgacacagccctcaggggatcc--------------agaggtggttagggcacagcccagtttcacac
i calJac3.chr4             C 0 I 2395
s saiBol1.JH378341           252869 145 +    515838 tgttggtgaaaagagttaaactccgtaaaatattcaaagagatttactctgagccaaatatgggtgaccatggcccatgacacaggcctcaggggatcccaagaacaagtactggaggtggttagggcacagcccagtttcgtac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     881828 145 -   1771730 tgttggtgaaaagagttaaactctgtaaaatattcaaagagatttattctgagccaaatatgggtgacgatggcccgtgacacagacttcaggggatcctgagaacatgtaccagtggtggttagggcacagcccagttttatac
i cebCap1.NW_016107755v1   C 0 I 2396
s aotNan1.NW_018496901v1      57820 143 -    486031 tgttggtgaaaagagttaaactctgtaaaatattcaaagagatttattctgagccaaatatgggtgaccatggcctgtg--acagacctcaggggatcccgagaacatgtaccagaggtggttagggcacagcccagtttcatac
i aotNan1.NW_018496901v1   C 0 I 2378
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I
e otoGar3.GL873550           294473   2 +  18854210 I
e cerAty1.NW_012002535v1     459593 1118 -    863181 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109840 364 - 170955103 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=3276.000000
s hg38.chr6_GL000254v2_alt  1464596 1 +   4827813 a
s panTro5.chr6             30334052 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30568410 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     275465 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74942635 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            29610078 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     319312 1 -    735854 a
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     247595 1 -   1829203 a
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           253014 1 +    515838 a
i saiBol1.JH378341         C 0 I 2385
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I
e otoGar3.GL873550           294473 2 +  18854210 I
e aotNan1.NW_018496901v1      57963 2378 -    486031 I
e cebCap1.NW_016107755v1     881973 2396 -   1771730 I
e calJac3.chr4             30441411 2395 + 171630274 I
e cerAty1.NW_012002535v1     459593 1118 -    863181 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109840 364 - 170955103 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=512501.000000
s hg38.chr6_GL000254v2_alt  1464597 223 +   4827813 tacatttttgggagacatgatacttcaatcaagtacatttaagatgtacatgggttaggttcagaaaggcaggatgactcaaagtagggagcttccaggttataagtagatttaaacattttctggttgacagttggttgagtttatctgaagacctgggatcaatggaaaggaaatgtctgggttgagataaagaactgtggagagaaaagagaaaagttcc
s panTro5.chr6             30334053 216 + 175400573 tacatttttgggagacatgatacttcaatcaagtacatttaagatgtacattggttaggttcagaaaggcaggatgactcaaagtagggggcttccaggttataagtagatttaaacattttctggttgacagttggttgagtttatctgaagacctgggatcaatggaaaggaaatgtctgggttgagataaagaactgtgg-------agagaaaagttcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30568411 216 + 173848474 tacatttttgggagacatgatacttcaatcaagtacatttaagatgtacattggttaggttcagaaaggcaggatgactcaaagtagggggcttccaggttataagtagatttaaacattttctggttgacagttggttgagtttatctgaagacctgggatcaatggaaaggaaatgtctgggttgagataaagaactgtgg-------agagaaaagttcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     275466 212 +   2037526 tacatttttgggagacatgatacttcaatcaagtacatttaagatgtacattggttaggttcagaaaggcaggatgactcaaagtagggggcttccaggttataagtacatttaaacgttttctggttgac----ggctgagtttatctaaagacctgggatcaatggaaaggaaatgtctgggttgagataaagaactgtgg-------agagaaaagttcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74942636 216 + 122973662 tacatttttgggagacatgagacttcaatcaagtacatttaagatgtacattggttaggttcagaaaggcaggacgactcagagtagggggcttccaggttataggtagatttaaacattttctggttgacagttggttgagtttatctaaagacctgggatcaatggaaaggaaatgtctgggctgagataaagaattgtgg-------agagaaaagttct
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            29610079 216 -  71996105 tacatttttgggagacatgagacatcaatcaagtacatttaagatgtatattggttaggttcagaaaggcaggaggactcaaagtagggggcttccaggttataggtagatttgaacattttctggttgacagttggttgagtttatctaaagacctgggatcaatggaaaggaaatgtcttggctgagataaagaactgtgg-------agagaaaagttct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     319313 216 -    735854 tacatttttgggagacatgaggcatcaatcaagtacatttaagatgtatattggttagcttcagaaaggcaggaggactcaaagtagggggcttccaggttacaggtagatttaaacattttctggttgacaattggttgagtttatctaaagacctgggatcaatggaaaggaaatgtcttggttgagataaagaactgtgg-------agaGAAAAATTCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     247596 211 -   1829203 tacatttttgggagacatgaggcatcaatcaagtacatttaagatgtatattggttagcttcagaaaggcaggaggactcacagtagggggcttccaggttacaggtagatttaaacattttctggttgacaattggttgagtttatctaaagacctgggatcaatggaaaggaaatgtcttggttgagataaagaactgtgg-------agagaaat-----
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I
e saiBol1.JH378341           253015 2385 +    515838 I
e otoGar3.GL873550           294473   2 +  18854210 I
e aotNan1.NW_018496901v1      57963 2378 -    486031 I
e cebCap1.NW_016107755v1     881973 2396 -   1771730 I
e calJac3.chr4             30441411 2395 + 171630274 I
e cerAty1.NW_012002535v1     459593 1118 -    863181 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e macFas5.chr4             30109840 364 - 170955103 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=3581.000000
s hg38.chr6_GL000254v2_alt  1464820 16 +   4827813 tttttttttttttttt--
s panTro5.chr6             30334269 14 + 175400573 --tttttttttttttt--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30568627 12 + 173848474 ----tttttttttttt--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     275678 11 +   2037526 -----ttttttttttt--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74942852 10 + 122973662 ------tttttttttt--
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30110204 16 - 170955103 --tttatttatttattta
i macFas5.chr4             I 364 C 0
s chlSab2.chr17            29610295 16 -  71996105 --tttgttttttttttgt
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012107142v1     319529  2 -    735854 --TT--------------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     247807 16 -   1829203 --tttttttttttttttt
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I
e saiBol1.JH378341           253015 2385 +    515838 I
e otoGar3.GL873550           294473  2 +  18854210 I
e aotNan1.NW_018496901v1      57963 2378 -    486031 I
e cebCap1.NW_016107755v1     881973 2396 -   1771730 I
e calJac3.chr4             30441411 2395 + 171630274 I
e cerAty1.NW_012002535v1     459593 1118 -    863181 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=57708.000000
s hg38.chr6_GL000254v2_alt  1464836 27 +   4827813 tttttgagacaaggtctcactctgtca
s panTro5.chr6             30334283 27 + 175400573 tttttgagacaaggtctcactctgtca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30568639 27 + 173848474 tttttgagacaaggtctcactctgtca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     275689 27 +   2037526 ctttttagacgaggtctcactctgtca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74942862 25 + 122973662 tttttgagacgaggtctca--ctgtca
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30110220 27 - 170955103 tttttgaggcagagtcttgctttgttg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     460711 25 -    863181 tttttgagac--agtcttgctctgttg
i cerAty1.NW_012002535v1   I 1118 C 0
s chlSab2.chr17            29610314 27 -  71996105 tttttgagatgaggtctcactttgttg
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012107142v1     319531  7 -    735854 --------------------tttgttg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     247823 27 -   1829203 tttttgagatgaggtcttactttgttg
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I
e saiBol1.JH378341           253015 2385 +    515838 I
e otoGar3.GL873550           294473  2 +  18854210 I
e aotNan1.NW_018496901v1      57963 2378 -    486031 I
e cebCap1.NW_016107755v1     881973 2396 -   1771730 I
e calJac3.chr4             30441411 2395 + 171630274 I
e macNem1.NW_012012100v1     358542 605 +   1495729 I
e rheMac8.chr4             30820121 661 + 172585720 I

a score=484214.000000
s hg38.chr6_GL000254v2_alt  1464863 100 +   4827813 cccagactgcagtgcaatggcatgatctcgactcactgcaacctccgcctcccaggttccagccattctcctgcctcagcctcccaagtagctggcatta
s panTro5.chr6             30334310 100 + 175400573 cccagactgcagtgcaatggcatgatctcgactcactgcaacctctgcctcccaggttccagccattctcctgcctcagcctcccaggtagctggcatta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30568666 100 + 173848474 cccagactgcagtgcaatggcatgatctcgactcactgcaacctctgcctcccaggttccagccattctcctgcctcagcctcccaggtagctggcatta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     275716 100 +   2037526 cccagactgcagtgcaatggcatgatctcgactcactgcaacctccgcctcccaggttccagcctttctcctgcctcagcctcccaagtagctggcatta
i gorGor5.CYUI01015528v1   C 0 I 1
s nomLeu3.chr1a            74942887  95 + 122973662 cccagactgga-tg-aatggc-cgatctc-actcactgcaacctctgcctcccaggttccagcca-tccccggcctcagcctcccaagtagctgggatta
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             30820782 100 + 172585720 cccaggctggagtgcagtggcgcaatctcggctcactgcacgctcagcctccctggttcacaccattctcctgcctcagcctcccgagtagctgggacta
i rheMac8.chr4             I 661 I 28
s macFas5.chr4             30110247 100 - 170955103 cccaggctggagtgcagtggcgcaatctcggctcactgcacgctcagcctccctggttcacaccattctcctgcctcagcctcccgagtagctgggacta
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     359147 100 +   1495729 cccaggctggagtgcagtggcgcaatcttggctcactgcacgctcagcctccctggttcacaccattctcctgcctcagcctcccgagtagctgggacta
i macNem1.NW_012012100v1   I 605 I 28
s cerAty1.NW_012002535v1     460736 100 -    863181 cccaggctggagtgcagtggcgcaatctcggctcactgcacgctcagcctccctggttcacaccattctcctgcctcagcctcccaagtagctgggacta
i cerAty1.NW_012002535v1   C 0 I 28
s chlSab2.chr17            29610341 100 -  71996105 cccagactggagtgcaatggcacaatcttgactcactgccacctccgcctcccaggttccagcaattcttctgcctcagcctcccgagtaactgggacta
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1     319538 100 -    735854 cccagactgaagtgcaatggcatgatcttgactcactgcaacctccgcctcccaggttccagctattcttctgcctcagcctcccgagtagctgggacta
i manLeu1.NW_012107142v1   C 0 I 1
s colAng1.NW_012115577v1     247850 100 -   1829203 cccagactggagtgcaatggcatgatcttgactcactgcaacctctgcctcccaggttccagcgattcttctgcctcagcctcctgagtagctgggacta
i colAng1.NW_012115577v1   C 0 I 1
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I
e saiBol1.JH378341           253015 2385 +    515838 I
e otoGar3.GL873550           294473   2 +  18854210 I
e aotNan1.NW_018496901v1      57963 2378 -    486031 I
e cebCap1.NW_016107755v1     881973 2396 -   1771730 I
e calJac3.chr4             30441411 2395 + 171630274 I

a score=62473.000000
s hg38.chr6_GL000254v2_alt  1464963 26 +   4827813 aggcatgcaccacctcgcctggctaa
s panTro5.chr6             30334410 26 + 175400573 aggcatgcaccacctcgcctggctaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30568766 26 + 173848474 aggcatgcaccacctcgcctggctaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     275817 26 +   2037526 aggcatgcaccaccttgcctggctaa
i gorGor5.CYUI01015528v1   I 1 C 0
s nomLeu3.chr1a            74942983 26 + 122973662 aggcatgcaccaccttgcctggctca
i nomLeu3.chr1a            I 1 C 0
s macFas5.chr4             30110348 26 - 170955103 aggcgcccgccacagagctctgctaa
i macFas5.chr4             I 1 I 1
s chlSab2.chr17            29610442 26 -  71996105 aggcatgtgccaccacgcccagctaa
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1     319639 26 -    735854 aggcatgtgccaccacgcccggctaa
i manLeu1.NW_012107142v1   I 1 C 0
s colAng1.NW_012115577v1     247951 26 -   1829203 aggcatgtgccactacgccaggctaa
i colAng1.NW_012115577v1   I 1 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I
e saiBol1.JH378341           253015 2385 +    515838 I
e otoGar3.GL873550           294473  2 +  18854210 I
e aotNan1.NW_018496901v1      57963 2378 -    486031 I
e cebCap1.NW_016107755v1     881973 2396 -   1771730 I
e calJac3.chr4             30441411 2395 + 171630274 I
e cerAty1.NW_012002535v1     460836 28 -    863181 I
e macNem1.NW_012012100v1     359247 28 +   1495729 I
e rheMac8.chr4             30820882 28 + 172585720 I

a score=317132.000000
s hg38.chr6_GL000254v2_alt  1464989 67 +   4827813 ttttttgta-tttttagtagagatgggatttctccatgttggtcaggctggtctcgaactcccgacct
s panTro5.chr6             30334436 67 + 175400573 ttttttgta-tttttagtagagatgggatttctccatgttggtcaggctggtcttgaaatcccgacct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30568792 67 + 173848474 ttttttgta-tttttagtagagatgggatttctccatgttggtcaggctggtcttgaactcccgacct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     275843 67 +   2037526 ttttttgta-tttttagtagagatgggagttctccatgttggtcaggctggtctcgaactcccgacct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74943009 67 + 122973662 ttttttgta-tttttagtggagatgggatttctccatgttggtcaggctggtctcgaactcccgacct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30820910 67 + 172585720 ttttttgta-tttttagtagagatggggtttcaccgcgttagccaagatggtctctatctcctgacct
i rheMac8.chr4             I 28 C 0
s macFas5.chr4             30110375 67 - 170955103 ttttttgta-tttttagtagagacggggtttcaccacgttagccaagatggtctctatctcctgacct
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     359275 67 +   1495729 ttttttgta-tttttagtagagacggggtttcaccgcgttagccaagatggtctctatctcctgacct
i macNem1.NW_012012100v1   I 28 C 0
s cerAty1.NW_012002535v1     460864 67 -    863181 ttttttgta-tttttagtagagatggcgtttcaccgtgttagccaagatggtctctatatcctgacct
i cerAty1.NW_012002535v1   I 28 C 0
s chlSab2.chr17            29610468 67 -  71996105 -tttttgtattttttagtagagacagagtttcaccatattggccaggctggtcttgaactcctgacct
i chlSab2.chr17            C 0 I 617
s manLeu1.NW_012107142v1     319665 67 -    735854 -tttttgtattttttagtagagacagggtttcaccatattggccaggctggtcctgaactcctgacct
i manLeu1.NW_012107142v1   C 0 M 1656
s colAng1.NW_012115577v1     247977 67 -   1829203 -tttttgtattttttagtggagacagggtttcaccatattgaccaggctggtcttgaactcctgacct
i colAng1.NW_012115577v1   C 0 I 640
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I
e saiBol1.JH378341           253015 2385 +    515838 I
e otoGar3.GL873550           294473  2 +  18854210 I
e aotNan1.NW_018496901v1      57963 2378 -    486031 I
e cebCap1.NW_016107755v1     881973 2396 -   1771730 I
e calJac3.chr4             30441411 2395 + 171630274 I

a score=-3690.000000
s hg38.chr6_GL000254v2_alt  1465056 3 +   4827813 cag
s panTro5.chr6             30334503 3 + 175400573 cag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30568859 3 + 173848474 cag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     275910 3 +   2037526 cag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74943076 3 + 122973662 cag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30820977 1 + 172585720 c--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30110442 1 - 170955103 c--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     359342 1 +   1495729 c--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     460931 1 -    863181 c--
i cerAty1.NW_012002535v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I
e saiBol1.JH378341           253015 2385 +    515838 I
e otoGar3.GL873550           294473 2 +  18854210 I
e aotNan1.NW_018496901v1      57963 2378 -    486031 I
e cebCap1.NW_016107755v1     881973 2396 -   1771730 I
e calJac3.chr4             30441411 2395 + 171630274 I
e colAng1.NW_012115577v1     248044 640 -   1829203 I
e manLeu1.NW_012107142v1     319732 1656 -    735854 M
e chlSab2.chr17            29610535 617 -  71996105 I

a score=2158639.000000
s hg38.chr6_GL000254v2_alt  1465059 479 +   4827813 gtgatctgtctgcctcggcctcccaaagtgctgggattacaggcgtgagc--caccgcacccggcacaaagttcttaatgtgcagaggaagccttcaggtagcaggcttcagagagaatagattataaatgttttttattagactcaaaaagggtgccagactct----tgattatctcctggacctg-aaaaaaagggaaaaggggattc-----------------------tctatagaatgtaga-tttttcccccacaagagacaactttgcagggcaatttcaagatatggcaaggaaatacatttggggttaaaatattttgatttctttccttatttgttatgtaatgttatgccagagccagtttggaaagtaggccacat----tagggttaaataaaacccctctgatgagactttacggtttgtagggcatgactccccaggccccttaggtagaaatttgggcaagagaaggaaaaaggtcagagtt-tagtcctcagaggt
s panTro5.chr6             30334506 502 + 175400573 gtgatctgtctgcctcggcctcccaaagtgctgggattacaggcgtgagc--caccgcacccggcacaaagttcttaatgtgcagaggaagccttcaggtagcaggcttcagagagaatagattataaatgttttttattagactcaaaaagggtgccagactct----tgattatctcctggacctg-aaaaaaagggaaaaggggattccctacattctatagaatctacattctatagaatgtaga-tttttcccccacaagagacaactttgcagggcaatttcaagatatggcaaggaaatacatttggggttaaaatattttgatttctttccttatttgttatgtaatgttatgccagagccagtttggaaagtaggccacat----tagggttaaataaaacccctctgatgagactttacagtttgtagggcatgactccccaggccccttaggtagaaatttgggcaagagaaggaaaaaggtcagagtt-tagtcctcagaggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30568862 502 + 173848474 gtgatctgtctgcctcggcctcccaaagtgctgggattacaggcgtgagc--caccgcacccggcacaaagttcttaatgtgcagaggaagccttcaggtagcaggcttcagagagaatagattataaatgttttttattagactcaaaaagggtgccagactct----tgattatctcctggacctg-aaaaaaagggaaaaggggattccctacattctatagaatctacattctatagaatgtaga-tttttcccccacaagagacaactttgcagggcaatttcaagatatggcaaggaaatacatttggggttaaaatattttgatttctttccttatttgttatgtaatgttatgccagagccagtttggaaagtaggccacat----tagggttaaataaaacccttctgatgagactttacagtttgtagggcatgactccccaggccccttaggtagaaatttgggcaagagaaggaaaaaggtcagagtt-tagtcctcagaggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     275913 479 +   2037526 gtgatctgtctgcctcggcctcccaaagtgctgggattacaggcgtgagc--ccccgcacccggcacaaagttcttaatgtgcagaggaagacttcaggtagcaggcttcagagagaatagattataaatgttttttattaggcttaaaaagggtgccagactct----tgattatctcctggacctg-aaaaaaagggaaaaggggattc-----------------------tctatagaatgtaga-tttttcccccacaagagacaactttgcagggcaatttcaagatatggcaaggaaatacatttggggttaaaatattttgatttctttccttatttactatgtaatgttatgccagagccagtttggaaagtaggccacat----tagggttaaataaaacccctctgatgagactttacggtttgtagggcatgactccccaggccccttaggtagaaatttgggcaagagaaggaaaaaggtcagagtt-tagtcctcagaggt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74943079 470 + 122973662 gtgatctgtctgccttggcctcccaaagtgctgggattacaggcatgagc----------------caaagttcttaatgtgcagaggaagccttcaggtagcaggcttcagaaagaatagattgtaaatgttttttattagactcaaaaagggtgccagactct----tgattatctcctggacctgaaaaaaaagggaaaaggggattc-----------------------tctatagaatgtaga-tttttcccccacaagagacgactttgcagggcaatttcaagatatggcaaggaaatatatttggggttaaaatattttgatttctttccttatttgttatgtaatgttatgccagagccagtgtggaaagtaggccacattatatagggtcaaataaaacccctctgatgagactttacggtttgtagggcgtaactccccaggccccttaggtagaaatttgggcaagagaaggaaaaaggtcagagtt-tagtcctcagagtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30820978 476 + 172585720 gtgatccgcccaccttggcctcccaaagtgctgggattacaggcgtgagc--caccgcgcctggccCAaagttcttaatgtgcagaggaagccttcaggtagcaggcttcagagacaatagattgtaaatggtttttattagactcaaaaagggtgccagactcttagttgattgtctcctggacctg--aaaaaagagaaaaggggattc-----------------------tctatagaatgtaga-tttttcccccacgagagacgactttgcagggcaatttcaagatatggcaaggaaatatatttggggttaaaatgttttgatttctttccttatttgtt-----atgttatgccagagccagtttggaaagtaggccacattatatagggttaaataaaacccctctgatgagactttaccgtttgtagggcatcactccccaggccacttaggtagaaatttgggcaagagaaggaaaaaagtca------aagtccttagGgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30110443 476 - 170955103 gtgatccgcccaccttggcctcccaaagtgctgggattacaggcgtgagc--caccgcgcctggcccaaagttcttaatgtgcagaggaagccttcaggtagcaggcttcagagacaatagattgtaaatggtttttattagactcaaaaagggtgccagactcttagttgattatctcctggacctg--gaaaaagagaaaaggggattc-----------------------tctatagaatgtaga-tttttcccccacgagagacgactttgcagggcaatttcaagatatggcaaggaaacatatttggggttaaaatgttttgatttctttccttatttgtt-----atgttatgccacagccagtttggaaagtaggccacattatatagggttaaataaaacccctctgatgagactctactgtttgtagggcatcactccccaggccacttaggtagaaatttgggcaagagaaggaaaaaagtca------aagtccttagGgtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     359343 476 +   1495729 gtgatccgcccaccttggcctcccaaagtgctgggattacaggcgtgagc--caccgtgcctggccCAaagttcttaatgtgcagaggaagccttcaggtagcaggcttcagagagaatagattgtaaatggtttttattagactcaaaaagggtgccagactcttagttgattatctcctggacctg--aaaaaagagaaaaggggattc-----------------------tctatagaatgtaga-tttttcccccacgagagacgactttgcagggcaatttcaagatatggcaaggaaacatatttggggttaaaatgttttgatttctttccttatttgtt-----atgttatgccagagccagtttggaaagtaggccacattatatagggttaaataaaacccctctgatgagactctactgtttgtagggcatcactccccaggccacttaggtagaaatttgggcaagagaaggaaaaaagtca------aagtccttagGgtt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     460932 484 -    863181 gtgatctgcccaccttggccttccaaagtgctgggattacaggcgtgaattacaccgtgcctggccCAaagttcttaatgtgctgaggaagccttcaggtagcaggcttcagagagaatagattgtaaatggtttttattagactcaaaaagggtgccagactcttagttgattatctcctggacctg--aaaaaagggaaaaggggattc-----------------------tctacagaatgtaga-tttttcccccacgagagatgactttgcagggcaatttcaagatatggcaaggaaatatatttggggttaaaatgttttgatttctttccttatttgtt-----atgtaatgccagagccagtttggaaagtaggccgctttatacagggttaaataaaacccctctgatgaaactttaccgtttgtagggcatgactccccatgccgcttaggtagaaatttgggcaagagaaggaaaaaagtcagagtttaagtccCTAGGgtt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29611152 481 -  71996105 gtaatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagc--caccgcgcccagcccaaagttcttaatgtgctgaggaaggcttctggtagcaggcttcagagagaatagattgtaaatggtttttattagactcagaaagggtgccacactcttagttgattatctcctggacctg--aaaaaagggaaaaggggattc-----------------------tctatagaatgtaga-tttttcccccacgagagacgactttgcagggcaatttcaagatatggcaaggaaatatatctggggttaaaatgttttgatttctttccttatttgtt-----atgttatgccagagccagtttggaaagtaggccacattatatagggttaaataaaacccctctgatgagactttaccatttgtagggcatgactcctcaggccgcttaggtagaaatttgggcaagagaaggaaaaaagtcagagtt-tagtccttagggtt
i chlSab2.chr17            I 617 C 0
s colAng1.NW_012115577v1     248684 483 -   1829203 gtgattcgtccaccttggcctcccaaagtgctcggattacaggcgtaagc--caccgcgcctggcccaaagttcttaatgtgtggagaaagccttcaggtagcaggcttcagagagaatagattgtaaatggtttttattagactcaaaaagggtgccagactcttagctgattatctcctggacctg--aaaaaagggaaaaggggattc-----------------------tctatagaatgtagattttttcccccacgagagatgactttgcagggcaatttcaagatatggcaaggaaatatatttggggttaaaatgttttgatttctttccttatttgtt-----atgttatgccagagccagtttggaaagtaggccacattatatagggttaaataaaacccgtctgatgagattttaccgtttgtaaggcatgagtccccaggccgcttaggtagaaatttgggcaagagaaggaaaaaagtcagagtttaagtccttagggtt
i colAng1.NW_012115577v1   I 640 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I
e saiBol1.JH378341           253015 2385 +    515838 I
e otoGar3.GL873550           294473   2 +  18854210 I
e aotNan1.NW_018496901v1      57963 2378 -    486031 I
e cebCap1.NW_016107755v1     881973 2396 -   1771730 I
e calJac3.chr4             30441411 2395 + 171630274 I
e manLeu1.NW_012107142v1     319732 1656 -    735854 M

a score=1421635.000000
s hg38.chr6_GL000254v2_alt  1465538 278 +   4827813 aaaataagcccatcagagcggacctttgtctaatctgactggtgtcttcataagaagacgagatttggaca-cacagaagggcaccagggatgctccacatgaggaaagaccttgtgaggactcactgagtagacggccatctgtaagccaag--gagagcggcctcacaggcaacaaccttgatcttggactttcagcctccagaactttgagaaaataaattgctgttgctagagccacccagcctgtggtactttgttacggaggtcctggcaaaaga
s panTro5.chr6             30335008 278 + 175400573 aaaataagcccatcagagcggacctttgtctaatctgactggcgtcttcataagaagaggagatttggaca-cacagaagagcaccagggatgctccacagaaggaaagaccttgtgaggactcactgagtagacggctatctgtaagccaag--gagagtggcctcacaagcaacaaccttgatcttggactttcagcctccagaactttgagaaaataaattgctgttgctagagccacccagcctgtggtactttgttacggaggtcctggcaaaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30569364 278 + 173848474 aaaataagcccatcagagcggacctttgtctaatctgactggcgtcttcataagaagaggagatttggaca-cacagaagagcaccagggatgctccacagaaggaaagaccttgtgaggactcactgagtagatggccatctgtaagccaag--gagagtggcctcacaagcaacaaccttgatcttggactttcagcctccagaactttgagaaaataaattgctgttgctagagccacccagcctgtggtattttgttacggaggtcctggcaaaaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     276392 278 +   2037526 aaaataagcccatcagagcggacctttgtctaatctgactggcgtcttcataagaagaggagatttggaca-cacagaagggcaccagggatgctccacgtgaggaaagaccttgtgaggactcactgagtagacggccatctgtaagccaag--gagagtggcctcacaggcaacaaccttgatcttgtactttcagcctccagaactttgagaaaataaattgctgttgctagagccacccagcctgtggtactttgttatggaggtcctggcaaaaga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74943549 278 + 122973662 aaaataagcccataagagtggacctttgtctaatctgaccggcgtcttcataagaagaggagatttggaca-cacagagaggcaccagggatgctccacgtgaggaaagaccttgtgaggactcagtgagtagacggccatctgtaagccaag--gagagaggcctcacaagcaacaaccttgatcttggactttcagcctccagaactttgagaaaataaattgctgttgccagagccacccagcctgtggtactttgttatggaggtcctggcaaaaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30821454 275 + 172585720 aaaataagcccatcacagtgggcctttgtctaatctgactggtgtcttcataagaag---agatttggaca-caccgagaggcgccagggatgctccacgtgaggacagaccttgtgaggacgcagtgagtagacggccgtctgcaagccaag--gagagaggcctcacaagcaacaaccttgatcttggactctcagcctccagaactttgagaaaataaattgccgctgctagagccactgagcctgtggtactttgttatggaggtcctggcaaaaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30110919 275 - 170955103 aaaataagcccatcacagtgggcctttgtctaatctgactggtgtcttcataagaag---agatttggaca-caccgagaggcgccagggatgctccacgtgaggacagaccttgtgaggacgcagtgagtagacggccgtctgcaagccaag--gagagaggcctcacaagcaacaaccttgatcttggactctcagcctccagaactttgagaaaataaattgccgctgctagagccactgagcctgtggtactttgttatggaggtcctggcaaaaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     359819 275 +   1495729 aaaataagcccatcacagtgggcctttgtctaatctgactggtgtcttcatgagaag---agatttggaca-cacagagaggcgccagggatgctccacgtgaggacagaccttgtgaggatgcagtgagtagacggccgtctgcaagccaag--gagagaggcctcacaagcaacaaccttgatcttggactctcagcctccagaactttgagaaaataaattgccgctgctagagccactgagcctgtggtactttgttatggaggtcctggcaaaaga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     461416 275 -    863181 aaaataagcccatcagagtgggcctttgtctaatctgactggtgtcttcataagaag---agatttggaca-cacagaaaggcacgagggatgctccacgtgaggaaagaccttgtgaagacgcagtgagtagacggccgtctgcaagccaag--gagagaggcctcacaagcaacagccttgatcttggactttcagcctccagaactttgagaaaataaattgctgctgctagagccactcagcctgtggtactttgttatggaggtcctggcaaaaga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29611633 257 -  71996105 aaaataagcccatcagagtgggcctttgtctaatctgactggtgtcttcataagaag----------------------aggcgccagggatgctccatgtgaggaaagaccttgtgaggacgcagtgagtagacggccgtctgcaagccaag--gagagaggcctcacaagcaacaaccttgatcttggactttcagcctccagaactttgagaaaataaattgctgctgctagagccactcagcctgtggtacttggttatggaagtcctggcaaaaga
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     249167 276 -   1829203 aaaatgagcccatcagagtgggcctttgtctaatctgactggtgtcttcataagacg---agatttggaca-cacagagaggcaccagggatgctccacgtgaggaaagaccttgtgaggacgtagtgagtagacagccgtctgcaagccaaggagagagaggcctcacaagaaacaaccttgatcttggactttcagcctccagaactttgagaaaataaattggcgctgctagag-cactcagcctgttgtactttgttatggaggtcctggcaaaaga
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           294475 274 +  18854210 aaaataagcctagtag-gtgggccgtaatccagtctaacttatgtctttacaagaagaggagattaagacaccgcagaaaggcaccagggatgctccatttgaggaaagatcttatgaggatgcagtgagaaaatggtcatctgcaagccaag--gagagaggctccagaagaaacaatcttgatcttgaacatccatcctcc--aactatgag-aaacaaatt-ctgttgctaaagccacccagtctgtggcactttgttatggtaatcttggcaaacta
i otoGar3.GL873550         I 2 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I
e saiBol1.JH378341           253015 2385 +    515838 I
e aotNan1.NW_018496901v1      57963 2378 -    486031 I
e cebCap1.NW_016107755v1     881973 2396 -   1771730 I
e calJac3.chr4             30441411 2395 + 171630274 I
e manLeu1.NW_012107142v1     319732 1656 -    735854 M

a score=10958.000000
s hg38.chr6_GL000254v2_alt  1465816 2 +   4827813 at
s panTro5.chr6             30335286 2 + 175400573 at
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30569642 2 + 173848474 at
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     276670 2 +   2037526 at
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74943827 2 + 122973662 at
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30821729 2 + 172585720 ac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30111194 2 - 170955103 ac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     360094 2 +   1495729 ac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     461691 2 -    863181 ac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29611890 2 -  71996105 ac
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     249443 2 -   1829203 ac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30443806 2 + 171630274 ac
i calJac3.chr4             I 2395 C 0
s saiBol1.JH378341           255400 2 +    515838 ac
i saiBol1.JH378341         I 2385 C 0
s otoGar3.GL873550           294749 2 +  18854210 at
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I
e aotNan1.NW_018496901v1      57963 2378 -    486031 I
e cebCap1.NW_016107755v1     881973 2396 -   1771730 I
e manLeu1.NW_012107142v1     319732 1656 -    735854 M

a score=49195.000000
s hg38.chr6_GL000254v2_alt  1465818 6 +   4827813 acaCAG
s panTro5.chr6             30335288 6 + 175400573 acaCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30569644 6 + 173848474 acaCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     276672 6 +   2037526 acaCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74943829 6 + 122973662 acaCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30821731 6 + 172585720 acaCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30111196 6 - 170955103 acaCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     360096 6 +   1495729 acaCAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     461693 6 -    863181 acaCAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29611892 6 -  71996105 acaCAG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     249445 6 -   1829203 acaCAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30443808 6 + 171630274 acacac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           255402 6 +    515838 acacac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     884369 6 -   1771730 acacac
i cebCap1.NW_016107755v1   I 2396 C 0
s otoGar3.GL873550           294751 6 +  18854210 acCCAG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I
e aotNan1.NW_018496901v1      57963 2378 -    486031 I
e manLeu1.NW_012107142v1     319732 1656 -    735854 M

a score=1788545.000000
s hg38.chr6_GL000254v2_alt  1465824 203 +   4827813 ATGAACTCCCATATCACCGCAGAGCCCACCTTCCATCCCCACAACCCCAGTTCTGAGTTTCCAGCTCTTCGCAAGGGATCTCCCAACC-CTTACACCTCCTACTGGATGGAGCAGTGCTCATCTCCTCTTCTCTCTATTGCAAA--CTTCAGTGcaggcactccacaatcctgcagctgcaatgtgagccagtttagcccctctgg
s panTro5.chr6             30335294 203 + 175400573 ATGAACTCCCATATCACCGCAGAGCCCACCTTCCATCCCCGCAACCCCAGATCTGAGTTTCCAGCTCTTCGCAAGGGATCTCCCAACC-CTTACACCTCCTACTGGATGGAGCACTGCTCATCTCCTCTTCCCTCTATTGCAAA--CTTCAGTGcaggcactccacaatcctgcagctgcaatgtgagccagtttagcccctctgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30569650 203 + 173848474 ATGAACTCCCATATCACCGCAGAGCCCACCTTCCATCCCCGCAACCCCAGATCTGAGTTTCCAGCTCTTCGCAAGGGATCTCCCAACC-CTTACACCTCCTACTGGATGGAGCACTGCTCATCTCCTCTTCCCTCTATTGCAAA--CTTCAGTGcaggcactccacaatcctgcagctgcaatgtgagccagtttagcccctctgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     276678 201 +   2037526 ATGAACTCCCATATCACCGCAGAG-CCACCTTCCATCACCACAA-CCCAGATCTGAGTTTCCAGCTCTTCTCAAGGGGTCTCCCAACC-CTTACACCTCCTACTGGATGGAGCAGTGCTCATCTCCTCTTCCCTCTATTGCAAA--CTTCAGTGCaggcactccacaatcctgcagctgcaatgtgagccagtttagcccctgtgg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74943835 203 + 122973662 ATGAACTCCCATATCACCGCAGAGCCCACCTTCCATCCCCACAACCCCAGATCTGAGTTTCCAGCTCTTCACAAGGGGTCTCCCAACG-CTTACACCTCCTACTGGATGGAGCAGTGCTCATCTCCTCTTCCCTCTATTGCAAA--CTTCAGTGcaggcactccacagtcctgcagctgcagtgtgagccagtttagcccctctgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30821737 202 + 172585720 ATGAACTCCCATATCACTGCAGAGCCCACCTTCCATCCCCCCAACCCCAGATCAGAGTTTCCAGCTCTTCACAAGGGGTCTCCCGACC-CTTCCACCTCCTACTGGATGGAGCA-TGCTCATCTCCTCTTCCCTCTATTCCAAA--CTTCAGTGcaggcactccacaatcctgcagctgcaatgtgagccagtttagcccctctga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30111202 202 - 170955103 ATGAACTCCCATATCACTGCAGAGCCCACCTTCCATCCCCCCAACCCCAGATCAGAGTTTCCAGCTCTTCACGAGGGGTCTCCCGACC-CTTCCACCTCCTACTGGATGGAGCA-TGCTCATCTCCTCTTCCCTCTATTCCAAA--CTTCAGTGcaggcactccacaatcctgcagctgcaatgtgagccagtttagcccctctgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     360102 202 +   1495729 ATGAACTCCCATATCACTGCAGAGCCCACCTTCCATCCCCCCAACCCCAGATCAGAGTTTCCAGCTCTTCACGAGGGGTCTCCCGACC-CTTCCACCTCCTACTGGATGGAGCA-TGCTCATCTCCTCTTCCCTCTATTCCAAA--CTTCAGTGcaggcactccacaatcctgcagctgcaatgtgagccagtttagcccctctgg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     461699 202 -    863181 ATGAACTCCCATATCACTGCAGAGCCCACCTTCCATCCCCCTAACCCCAGATCTGAGTTTCCAGCTCTTCACGAGGGGTCTCCCGACC-CTTCCACCTCCTACTGGATGGAGCG-TGCTCATCTCCTCTTCCCCCTATTCCAAA--CTTCAGTGcaggcactccacaatcctgcagctgcaatgtgagccagtttagcccctctgg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29611898 202 -  71996105 ATGAACTCCCATATCACTGCAGAGCCCACCTTCCATCCCCCCAACCCCAGATCAGAGTTTCCAGCTCTTCATGAGGGGTCTCCCGACC-CTTCCACCTCCTACTGGACGGAGCG-TGCTCATCTCCTCTTCCCTCTATTCCAAA--CTTCAGTGCaggcactccacaatcctgcagctgcaatgtgagccagtttagcccctctgg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     249451 202 -   1829203 ATGAACGCCCATATCACTGCAGAGCCCACCTTCCATCCCCGCAACCCCAGATCTGATTTTCCAGCTCTTCACGAGGGGTCTCCCAACC-CTTCCACCTCCTACTGGATGGAGCA-TGCTCATCTCCTCTTCCCTCTATTCCAAA--CTTCAGTGcaggcactccacaatcctgcagctgcaatgtgagccagtttagcccctctgg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30443814 197 + 171630274 acaaactcacaTATCACTGCAGAGCCCACCTCCCATCCCCCCA---CCAGATCTGAGTTCCCAGCTCTCCACGAGGGGTCTTCCAACC-CTCACACCTCCTACTGGAT---GCAGCCCTCATTGCCTCTTTCCGCCCTCCCAGA--CTTCAGTGcaggcactccataatcctccagctgcaatgtgagccagttcagcccctctgc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           255408 200 +    515838 acGAACTCACATATCACTGCAGAGCCCACCTCCCATCCCCCCA---CCAGATCTGAGTTCCCAGCTCTCCACGAGGGGTCTCCTGACC-CTCACACCTCCTGCTGGATGCAGCAGCATTCATCGCCTCTTTCCGCCATTCCAAC--CTTCAGTGcaggcactccataatcctccagctgcactgtgagccagttcagcccctctgg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     884375 198 -   1771730 acGAACTCACATATCACTGCAGAGCTCACCTCCCATCCCCCCA---CCAGATCTGAGTTCCCAGCTCTCCACAAGGGGTCTCCCAACC-CTCACACCTCCT--TGGATGCAGCAGCACTCATCGCCTCTTTCCGCCATTCCAAC--CTTCAGTGcaggcactccataatcctccagctgcactgtgaaccagttcagcccctctgg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      60341 200 -    486031 ATGAACTCACATATCACTGCAGAGCCCACCTCCCATCCTCCCT---CCAGATCTGAGTTCCCAGCTCTTCATGAGGGGTCTCCCGACC-CTCACACCTCCTACTGGATGCAGCAGCACTCATCGCCTCTTTCCTCCATTCCAAA--CTTTAGTGCAGGCTCTCCATAATCCTCCAGCTGCaatgtgagccagttcagcccctctgg
i aotNan1.NW_018496901v1   I 2378 C 0
s otoGar3.GL873550           294757 194 +  18854210 GTGTACTCCCCTATCCCAGTGGAGCCTACCTTACATGCCCCCCTACC-----------TTCCAGCTCCTTAAAAGGGGTCTCCCAACCTCTTACATCTCCAACTAGACATAGCAGTGCTCATTATCAGTTCTCTCCATTCCAAACTCTTCAGCACAGGCACTCAGCAGTACTCCAGATGGAATG-GAGCTGATTTGATCCCTCTAG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I
e manLeu1.NW_012107142v1     319732 1656 -    735854 M

a score=890187.000000
s hg38.chr6_GL000254v2_alt  1466027 82 +   4827813 actgtgtgtgggcaat-------------------atacaccaaaattattttaaaatgcacctaagaccgtttggcccagtagtttcatgtctaaaagtt
s panTro5.chr6             30335497 82 + 175400573 actgtgtgtgggcaat-------------------atataccaaaattattttaaaatgcacctaagaccgtttggcccagtagtttcatgtctaaaaatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30569853 82 + 173848474 actgtgtgtgggcaat-------------------atataccaaaattattttaaaatgcacctaagaccgtttggcccagtagtttcatgtctaaaaatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     276879 82 +   2037526 actgtgtgtgggcaat-------------------atataccaaaattattttaaaatgcacctaagaccgtttggcccagtagtttcatgtctaaaaatt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74944038 82 + 122973662 actgtatgtgggcaat-------------------atacaccaaaattattttaaaatgcacctaagaccttttggcccagtagtttcatgtctaaaaatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30821939 82 + 172585720 actgtatgtgggcaat-------------------atataccaaaatcatttttaaatgcacctaagaccttttggcccagcaatttcatgtctaaaaatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30111404 82 - 170955103 actgtatgtgggcaat-------------------atataccaaaatcatttttaaatgcacctaagaccttttggcccagcaatttcatgtctaaaaatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     360304 82 +   1495729 actgtatgtgggcaat-------------------atataccaaaatcatttttaaatgcacctaagaccttttggcccagcaatttcatgtctaaaaatt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     461901 82 -    863181 actgtatgtgggcaat-------------------atataccaaaatcatttttaaatgcacctaagaccttttggcccagcaatttcatgtctaaaaatt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29612100 82 -  71996105 actgtatgtgggcaat-------------------atataccaaaattatttttaaatgcacctaagaccttttggcccagcaatttcatgtctaaaaatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     321399 82 -    735854 ACTGTATGTGggcaat-------------------atataccaaaattatttttaaatgcacctaagaccttttggcccagcaatttcatgtctaaaaatt
i manLeu1.NW_012107142v1   M 1656 C 0
s colAng1.NW_012115577v1     249653 82 -   1829203 actgtatgtgggcaat-------------------atataccaaaattatttttaaatgcacctaacaacttttggcccagcaatttcatgtctaaaaatt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30444011 82 + 171630274 actgtatgtgggcaat-------------------atataccgaaattattttaaaatgcacctaagattttttggcccagcaacttcatgtctgaaaagt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           255608 82 +    515838 actgtatgtggccaat-------------------atataccgaaattattttaaaatgcacctaagagcttttggcccagcaatttcatgtgtgaaaact
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     884573 82 -   1771730 actgtatgtgggcaat-------------------atataccgaaattatttaaaaatgcacctaagatcttttggcccagcaatttcatgtctgaaaact
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      60541 82 -    486031 actgtatgtgggcaat-------------------atataccgaaattattttaaaatgcacctaagatcttttggcccagcaatttcatgtctaaaaatt
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           294951 98 +  18854210 ---ATATTTTGGCAATATATACTAAAATATATTAGatatactaaaattcttttcaaatgcacataaaaccttttgtcccagcaattccacgtctaaaaatt
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I

a score=5848103.000000
s hg38.chr6_GL000254v2_alt  1466109 615 +   4827813 ttccctaagtgaagccatcctcacagggttaacaataattctggacagaaatataattataattaagccttaatcagactgcactttgactcacttccttgaaaccaaaagtcatgtaacactagacactgaccagtcatatccccattgttgctctaggtaggatttctgacataagaatcagccaaggcaggaggattgcttgaagccaggagttcgagaccagcctgggcaaca-aagcaagatcccatctct--acaaaaa---aaattattaa-tt---aaaaaa------attttttt--------aaagaattgcttaagcagatcctgaattttagtagaacagctgatgacaactagtttaagacctccacaaaggaactgttttctcaa-cttga-taatacagcttcttcatctccttgtcccatgacttcaccctgcactcttcagccagtcactttggccaactccaaaatctttaaaatctctagctccaaattatttggggagatggatttgaagttcccttccatgtcctcatttg--------------gcagccctacgattaaacctctttctctgctgcaaccaggtttcagcttactgactttctgtgcctgttgggcaacaaatctgttatgg
s panTro5.chr6             30335579 617 + 175400573 ttccctaagtgaagccatcctcacagggttaacaataattctggacagaaatataattataattaagccttaatcagactgcactttgactcacttccttgaaaccaaaagtcatgtaacactagacactgaccagtcatatccccattgttgctctaggtaggatttctgacataagaatcagccaaggcaggaggattgcttgaagccaggagttcgagaccagcctgggcaaca-aagcaagatcccatctcta-aaaaaaa---aaattattaa-tt--aaaaaaa------attttttt--------aaagaattgcttaagcagatcctgaattttagcagaacagctgatgacaactagtttaagacctccacaaaggaactgttttctcaa-cttga-taatacagcttcttcatctccttgtcccatgacttcaccctgcactcttcagccaatcacttaggccaactccaaaatctttaaaatctctagctccaaattatttggggagatggatttgaagttcccttccatgtcctcatttg--------------gcagccctacgattaaacctctttctctgctgcaaccaggtttcagcttactgactttctgtgcctgttgggcaataaatctattatgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30569935 610 + 173848474 ttccctaagtgaagccatcctcacagggttaacaataattctggacagaaatataattataattaagccttaatcagactgcactttgactcacttccttgaaaccaaaagtcatgtaacactagacactgaccagtcatatccccattgttgctctaggtaggatttctgacataagaatcagccaaggcaggaggattgcttgaagccaggagttcgagaccagcctgggcaaca-aagcaagatcccatctct----aaaaa---aaattattaa-t----aaaaaa--------tttttt--------aaagaattgcttaagcagatcctgaattttagcagaacagctgatgacaactagtttaagacctccacaaaggaactgttttctcaa-cttga-taatacagcttcttcatctccttgtcccatgacttcaccctgcactcttcagccaatcacttaggccaactccaaaatctttaaaatctctagctccaaattatttggggagatggatttgaagttcccttccatgtcctcatttg--------------gcagccctacgattaaacctctttctctgctgcaaccaggtttcagcttactgactttctgtgcctgttgggcaataaatctattatgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     276961 617 +   2037526 ttccctaagtgaagccatcctcacagggttaacaataattctggacagaaatataattataattaagccttaatcagactgcactttgactcacttccttgaaaccaaaagtcatgtaacactagacactgaccagtcatatccccattgttgctctaggtaggatttctgacataagaatcagccaaggcaggaggatggcttgaagccaggagttcgagaccagcctgggcaaca-aagcaagatcccatctcta-caaaaaa---aaattattaa-tt--aaaaaaa------attttttt--------aaagaattgcttaagcagatcctgaattttagcagaacagctgatgacaactagtttaagacctccacaaaggaactgttttctcaa-cttga-taatacagcttcttcatctccttgtcccatgacttcaccctgcactcttcagccaatcactttggccaactccaaaatctttaaaatctctagctccagattatttggggagatggatttggagttcccttccatgtcctcatttg--------------acggccctacgattaaacctctttctctgctgcaaccaggtttcagcttactgactttctgtgcctgttgggcaacaaatctattatgg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74944120 618 + 122973662 ttccctaagtgaagccatcctcacagggtcaacaataattctggacagacatatagttataattaagccttaatcaggatgcactttgactcacttccttgaaaccaaaagtcatgtaacactagatactgaccattcatatccccattgttgctataggtaggatttctgacataagaatcagccaaggcaggaggattgcttgaagccaggagttcgagaccagcctgggtaaca-aagcaagatcccatctctacaaaaaaa---aaattatgaa-tt--aaaaaaa------attttttt--------aaagaattgcttaagcagatcctgaattttagcagaacagctgatgacaactagtttaagacctccacaaagggactgttttctcag-cttga-taatacagcttcttcatctccttgtcccatgacttcaccctgcactcttcagccaatcactttggcccactccaaaatctttaaaatctctagctccaaattctttggggagatggatttgaagttcccttctatgtcctcatttg--------------gtggccctacgattaaacctctttctctgctgcaaccaggtttcagcttactgactctctgtgcctgttgggcaacaaatctattatgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30822021 618 + 172585720 ttccctaagtgaagccatcctcacagggttaacaatcattctggacagaaatatagttataattaagccttaatcaggctgcactttgactcactgccttgaaaccaaaagttatgtaacactagatactgaccagtcatatccccgttgttgctatacgtaggatttctgacataagaatcagccaaatcaggaggattgcttgaagccaggagttcgcgaccagcctgggcaaca-aagcaagatcccaactcta-caaaaca---aaattattaagtt--aaaaaca------attttttt--------aaagaattgcttaagcagatcctgaatttcagcagaacagatgatgacaactagtttaagacctccacgaaggaactgttttctcag-catgg-taatacagcttcttcatctccctgtcccatgacttcaccctgcactcttcagccaatcactttggtccactccaaaatctttaaaatctctagctccaaattctttggggagatggatttgaagttcccttccatgtcctcatttg--------------gtggccctatgattaaacctctttctctgctgcaaccaggtttcagctgactgacttgctgtgcctgttgggcaacaaatctattatgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30111486 618 - 170955103 ttccctaagtgaagccatcctcacagggttaacaatcattctggacagaaatatagttataattaagccttaatcaggctgcactttgactcactgccttgaaaccaaaagttatgtaacactagatactgaccagtcatatccccgttgttgctatacgtaggatttctgacataagaatcagccaaatcaggaggattgcttgaagccaggagttcgcgactagcctgggcaaca-aagcaagatcccaactcta-caaaaca---aaattattaaatt--aaaaaca------attttttt--------aaagaattgcttaagcagatcctgaatttcagcagaacagatgatgacaactagtttaagacctccacgaaggaactgttttctcag-catgg-taatacagcttcttcatctccctgtcccatgacttcaccctgcactcttcagccgatcactttggtccactccaaaatctttaaaatctctagctccaaattctttggggagatggatttgaagttcccttccatgtcctcatttg--------------gtggccctacgattaaacctctttctctgctgcaaccaggtttcagctgactgacttgctgtgcctgttgggcaacaaatctattatgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     360386 618 +   1495729 ttccctaagtgaagccatcctcacagggttaacaatcattctggacagaaatatagttataattaagccttaatcaggctgcactttgactcactgccttgaaaccaaaagttatgtaacactagatactgaccagtcatatccccgttgttgctatacgtaggatttctgacataagaatcagccaaatcaggaggattgcttgaagccaggagttcgcgaccagcctgggcaaca-aagcaagatcccaactcta-caaaaca---aaattattaaatt--aaaaaca------attttttt--------aaagaattgcttaagcagatcctgaatttcagcagaacagatgatgacaactagtttaagacctccacaaaggaactgttttctcag-catgg-taatacagcttcttcatctccctgtcccatgacttcaccctgcactcttcagccaatcactttggtccactccaaaatctttaaaatctctagctccaaattctctggggagatggatttgaagttcccttccatgtcctcatttg--------------gtggccctacgattaaacctctttctctgctgcaaccaggtttcagctgactgacttgctgtgcctgttgggcaacaaatctattatgg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     461983 632 -    863181 ttccctaagtgaagccatcctcacagggttaacaatcattctggacagaaatataattataattaagccttaatcaggctgcactttgactcactgccttgaaaccaaaagttatgtaacactagatactgaccagtcatatccccgttgttgctatacgtaggatttctgacataagaatcagccaaatcaggaggattgcttgaagccaggagttcgcgaccagcctgggcaaca-aagcaagatcccaactcta-caaaaca---aaattattaaatt--aaaaaca------atcttttt--------aaagaattgcttaagcagatcctgaatttcagcagaacagatgatgacaactagtttaagacctccacgaaggaactgttttctcag-catga-taatacagcttcttcatctccctgtcccatgacttcaccctgcactcttcagccaatcactttggtccactccaaaatctttaaaatctctagctccaaattctttggggagatggatttgaagttcccttccatgtcctcattcggtggccctacgattgtggccctacgattaaacctctttctctgctgcaaccaggtttcagcttactgacttgctgtgcctgttgggcaacaaatctattaggg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29612182 612 -  71996105 ttccctaagtgaagccatcctcacagggttaacaatcattctggacagaaatatagttataattaagccttaatcaggctgcacttggactcacttccttgaaaccgaaagttatgtaacactagatactgaccagtcatatccccattgttgctatacgtaggatttctgacataagaatcagccaaatcaggaggattgcttgaagtcaggagttcgcgaccagcctgggcaaca-aagcaagatcccaactct------acg---aaattattaaatt-aaaaaaaa------tttttttt--------aaagaattgcttaagcagatcctgaatttcagcagaacagatgatgacaactagtttaagacctccacgaaggaactgttttctcagcca----taatacagcttcttcatctccttgtcccatgacttcaccctgcactcttcagccaatcactttggtccactccaaaatctttaaaatctctagctccaaattctttggggagatggatttgaagttcccttctatgtcctcatttg--------------gtggccctacgattaaacctctttctctgctgcaaccaggtttcagcttactgacttgctgtgcctgttgggcaacaaatctattatgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     321481 617 -    735854 ttccctaagtgaagcaatcctcacagggttaacaatcattctggacagaaatatagttataattaagcc-taatcaggctgcactttgacttacttccttgaaaccaa-------gtaacactagatactgaccagtcatatccctgttgttgctataggtaggatttctgacataagaaacagccaaatcaggaggattgtttgaagccaggagttcgcgaccagcctgggcaaca-aagcaagatcccaactct------aca---aaattattaaatt-taaaaaaa------attttttt--------aaagaattgcttaagcagatcctgaatttcagcagaacagatgatgacaactagtttaagacctccacgaaggaactgttttctcag-ca----taatacagcttcttcatctccctgtcccatgacttcaccctgcactcttcagccaatcactttggtccactccaaaatctttaaaatctctagctccaaattctttggggagatggatttgaagttcccttccatgtcctcattcggtggccctacgattgtggccctacgattaaacctctttctctgctgcaaccaggtttcagcttactgacttgctgtgcctgttgggcaacaaatctattaggg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     249735 620 -   1829203 ttccctaagtgaagccatcctcacagggttaacaatcattctggacagaaatatacttacaattaagccttaatcaggctgcactttgactcacttccttgaaactgaaagttatgtaacactagatactgaccagtcatatccccgttgttgctatatgcaggatttctgacataagaatcagccaaatcaggaggattgcttgaagccaggagttcgtgaccagcctgggcaaca-aagcaagatcccaactcta-caaaaca---aaattattaaattaaaaaaaaa------tttttttt--------aaggaattgcttaagcagatcctgaatttcagcagaacagatgatgacaacttgtttaagacctccacaaaggaactgttttctcag-catga-taatacaggttcttcatctccttgtcccatgacttcacccttcactcttcagccaatcactttggtccactccaaaatctttaaaatctctagctccagattctttggggaggtggatttgaagttcccttccatgtcctcatttg--------------gtggccctacgattaaacctctttctctgctgcaaccaggtttcagcttactgacttgctgtgcctattgggcaacaaatctattatgg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30444093 630 + 171630274 ttccctgagtgaagtcatcctcacagggttaacaagaattctggacagaaatataggtataattaagccttaatcagactgcacttcgactcatttccttgaaaccgaaagtcatgtaacactagatactga-cagtcat-atcccattgttgctataggtaggatttctcacataagaatcagagaaggcgggaggattgcttgaaaccaagagttcaagaccagcctgggcaacaaaagcaaggtgccatctcta-caaaaaaaataaataaataa-----aaataaaataagtatttttttaatttaaaaaagaattgcttaagcagatcctgaatttcagcagaacgactgatgaaaactagtttaagacctccacaaa-gaactgtatcctcag-cataattaatacagctttttcatctccctgtcctatgactt-gcactgcactcttcagccaatcactttggcccactccaaaacctctaaaatgcctagctccaaattctttggggagatcgatttgaagttcccttccatgcccacatttg--------------gcagccctacaattaaacctctctctctgccacaagtaggtttcagctcatttacttgctgtgcctgttgggcaacaaatctattatgg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           255690 618 +    515838 taccctgagtgaagccatcctcacagggttaacaagaattctggacagaaattaaggtataattaagccttaatcagactgcactttgactaatttccttaaaaccaaaagtcatgtaacactagacactgaccagtcacaaccccattgttgctataggtaggatttctgatgtaagaatcaaccaaggcagcaggattgcttgaaaccaggagttcaagaccagcctgcgcaacacaagcaaggtcccatctcta-caaaaaa---caattattaa-----aa-----------atttttttaatttaaaaaagaattgcttaagcagatcctgaatttcagcagaacaactgatgacaactagtttaagacctccacaaa-gcactgtattctcag-cataattaatacggcttcttcatctccctgtcctatgactt-gcactgcactcttcagccaatcactttggcccactccaaaacctttaaaatccctagctccaaattctttggggagatggatgtgaagttcccttccacgccctcatttg--------------gcagccctacgattaaacctctttctctgccgcaagcaggtttcagcttatttacttgctgtgcctgttgggcaacaaatctattatga
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     884655 617 -   1771730 taccctgagtgaagccatcctcacagggttaacaagaattctggacagaaatataggtataattaagccttaatcagactgcactttgactcatttccttaaaaccaaaagtcatgtaacactagacactgaccagtcatatccacattgttgctataggtaggatttctgacataagaatcagccaaggcaggaggattgcttgaaaccaggagttcaagaccagcctgggcaacaaaaggaagatcccatctcta-ccaaaaaa--aaattattaa-----a------------atttttttaatttaaaaaagaattgcttaagcagatcctgaatttctgcagaacaactgatgacaactagtttaagacctccacaaa-gaactgtattctcag-cataattaatacggcttcttcatctccctgtcctatgactt-gcactggactctttagccaatcac-ttggcccactccaaaacctttaaaatccctagctccaaattctttggggagatgggtttgaagttcccttccatgccctcatttg--------------gcagccctacgattaaacctccttctctgccgcaaccaggtttcagcttatttacttgctgtgcctgttgggcaacaaatttgttatgg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      60623 611 -    486031 ttccctaagtgaggccatcctcacagggttaacaagaattctggacagaaatataggtataa-------ttaatcagactgcactttgactcatttccttaaaaccaaaagtcatgtaacactagacactgaccagtcatatccccattgttgctataggtaggatttctgacataagaatcagccaaggcaggaggattgcttgaaaccaggagttcaagaccagcctgggcaacaaaaggaagagcccatctcta-caaaaaa---aaattattaa-----at-----------ttttttttaatttaaaaaagaattgcttaagcagatccgaaatttctgcagaacaactgatgacaactagtttaagacctccacaaa-gaactgtattctcag-cataattaatacagcttcttcatctccctgtcctatgactt-gcactgcactcttcagccaatcactttggcccactccaaaacctttaaaatccctagctccaaattctttggggagatggatttgaagttcccttccatgccctcatttg--------------gcagccctacgattaaacctctttctctgccacaaccaggtttcagcttatttacttgctgtgcctgttgggcaacaaatctattatgg
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I
e otoGar3.GL873550           295049   0 +  18854210 C

a score=2847948.000000
s hg38.chr6_GL000254v2_alt  1466724 274 +   4827813 ttacataaggaagtaatcaaaAGCATATATAGTCAGAGAAAAGAAACCAGAAGGATAACTTatttgttcattacaatggatacttattactatgtgacaggcataattctaggcacttttattacagtgaataaagtatacagaagccccacccact---gagagccaggcagtaaatcagctaaccaaatgaatcatacattaggaggaaat-tt--tttttttcacattaaggttctaaggaggaaataaatattatggag-gaaaaaataaagcagaa
s panTro5.chr6             30336196 274 + 175400573 ttacataaggaagtaatcaaaAGCATATATAGTCAGCGAAAAGAAACCAGAAGGATAACTTatttgttcattacaatggatacttattactatgtgtcaggcataattctaggcacttttattacagtgaataaagtagacagaagccccacccact---gagagccaggcagtaaatcagctaaccaaatgaatcatacattaggaggaaat-tt--tttttttcacattaaggttctaaggaggaaataaatattatggag-gaaaaaataaagcagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30570545 274 + 173848474 ttacataaggaagtaatcaaaAGCATATATAGTCAGCGAAAAGAAACCAGAAGGATAACTTatttgttcattacaatggatacttattactatgtgtcaggcataattctaggcacttttattacagtgaataaagtagacagaagccccacccact---gagagccaggcagtaaatcagctaaccaaatgaatcatacattaggaggacat-tt--tttttttcacattaaggttctaaggaggaaataaatattatggag-gaaaaaataaagcagaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     277578 273 +   2037526 ttacataaggaagtaatcaaaagCATATATAGTCAGAGAAAAGAAACCAGAAGGATAACTTatttgttcattacaatggatacttattactatgtgtcaggcataattctaggcacttttattacagtgaataaagtagacagaagccccacccact---gagagccaggcagtaaatcagctaaccaaatgaatcatacattaggaggaaa--tt--tttttttcacattaaggctctaaggaggaaataaatattatggag-gaaaaaataaagcagaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74944738 274 + 122973662 ttacataaggaaataatcaaaAGCATACATAGTCAGAGAAAAGAAACCAGAAGGATAACTTatttgttcattacaatggattcttattaccatgtgtcaggcataattctaggcacttgtattacagtgaataaagtagacagaagccccacccact---gagagccaggcagtaaatcagctaaccaaatgaatcatacattaggaggaaat-at--tttttttcacattaaggttctaaggaggaaataaatattatggag-gaaaaaataaagcagaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30822639 274 + 172585720 ttacataaggaaataatcaaaagcatatataaTC-GAGAAAAGAAACCAGAAGGATAATTTatttgttcattacaatggatacttattactatgtgtcagacataattctaggcactcgtattacagtgaataaagtagacagaagccccacccact---gagagccaggcagtaaatcagctaaccaaatgaatcatacattaggaggaaat-at-ttttttttcacattaaggttctaaggaggaaataaatattatggag-gaaaaaataaagcagaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30112104 275 - 170955103 ttacataaggaaataatcaaaagcatatataaTC-GAGAAAAGAAACCAGAAGGATAATTTatttgttcattacaatggatacttattactatgtgtcagacataattctaggcactcgtattacagtgaataaagtagacagaagccccacccact---gagagccaggcagtaaatcagttaaccaaatgaatcatacattaggaggaaat-atattttttttcacatgaaggttctaaggaggaaataaatattatggag-gaaaaaataaagcagaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     361004 275 +   1495729 ttacataaggaaataatcaaaagcatatataaTC-GAGAAAAGAAACCAGAAGGATAATTTatttgttcattacaatggatacttattactatgtgtcagacataattctaggcactcgtattacagtgaataaagtagacagaagccccacccact---gagagccaggcagtaaatcagttaaccaaatgaatcatacattaggaggaaat-atattttttttcacatgaaggttctaaggaggaaataaatattatggag-gaaaaaataaagcagaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     462615 276 -    863181 ttacataaggaaataatcaaaAGCATATATAGTCAGAGAAAAGAAACCAGAAGGATAATTTatttgttcattacaatggatacttagtactatgtgtcagacataattctaggcactcgtattacagtgaataaagtagacagaagccccacccact---gagagccaggcagtaaatcagttaaccaaatgaatcatacattaggaggaaat-atattttttttcacatgaaggttctaaggaggaaataaatattatggag-gaaaaaataaagcagaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29612794 275 -  71996105 ctacataaggaaataatcaaaagCATATATAGTCAGAGAAAAGAAACCAGAAGGATAATTTatttgttcattacaatggatacctattactgtgtgtcagacataattctaggcactcgtattacagtgaataaagtagacagaagccccacccact---gagagccagggagtagatcagctaaccaaatgaatcatacattaggaggaaat-ac-atttttttcacattaaggttctaaggaggaaataaatattatggag-gaaaaaataaagcagaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     322098 275 -    735854 ttacataaggaaataatcaaaAGCATATATAGTCAGAGAAAAGAAACCAGAAGGATAATTTatttgttcattacaatggatacttagtactatgtgtcagacataattctaggcactcgtattacagtgaataaagtagacagaagccccatccact---gagagccaggcagtaaatcagctaaccaaatgcatcatacattaggaggaaat-at-atttttttcacatgaaggttctaaggaggaaataaatattatggag-gaaaaaataaagcagaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     250355 274 -   1829203 ttacataaggaaataatcaaaAGCATATATAGTCAGAGAAAAGAAACCAGAAGGATAATTTatttgttcattacaatggatacttattactgtgtgtcaggcataattctaggcactcgtattacagtgaataaagtagacagaagccccacccact---gagagccagacagtaaatcagctaaccaaatgaatcatacattaggaggaaat-at--tttttttcacattaaggttctaaggaggaaataaatattatggag-gaaaaaataaagcagaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30444723 273 + 171630274 ttacataaagaaataatcaaaagcaaatgtagtcagagaA---AAACCAGAAGGAAAACTTatttattcattacaacagatagttattactatgtgtcaggcgtaattctgggcacttgcattgcagagaacaaagtagacagaagccccgcccact---gagagccaggcagtaaatcagctaaccaaatgaatcatatgttaggaggaagtatt-ttttttttcacattaaggctctaagtaggaaataaatattatggag-aaaaaaataagggcgga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           256308 271 +    515838 ttacataaggaagtaatcg-----aaatgtagtcagagaAAAGAAAGCAGAAGGATAACTTGCTTGttcattacaatggatacttgttactatgtgtcaggcataattctaggcacttgtattgcagtgaacaaagcagacagaagccccgcccacc---gagagccaggcagtaaatcagctaactaaatgaatcgtacgttaggaggaaat-tt-ttttttttcacattaaggctctaagtaggaaataaatattatggagaaaaaaaattaaggcgga
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     885272 275 -   1771730 ttacataaggaaataatcaaaagcaaatgtagtcagagaAAAGAAACCAGAAGGATAACTTGtttgttcattacaatggatacttattactatgtgtcaggcataattctaggcacttgtattgcagtgaacaaagtagacagaagccccgcccact---gagagccaggcagtaaatcagctaaccaaatgaattgtacattaggaggaaat-at-ttttttttcacattaaggctctaagtaggaaataaatattatggag-aaaaaaataaaggcaga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      61234 275 -    486031 ttacataaggaaataatcaaaagcaaatgtagtcagagaAAAGAAACCAGAAGGATAATTTGtttgttcattacaatggatgctcattactatgtgtcaggcataattccaggcacttgtattgccttgaacaaagtagacagaagccccacccact---gagagccaggcagtaaatcagctagccaaatgaatcgtactttaggaggaaat-at-ttttttttcacattaaggctctaagtaggaaataaatattatggag-aaaaaaataaaggcgga
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           295049 231 +  18854210 ttccctaagggaataatcaaaaacatatgtcttcagagaaaatgcatgggaaggatacttta----ttcatTacaa---atacttattattacatgtcaggcacaattgtaggcacacatatcacagcaaacaaactaaa-agaatttctactcactgaggagaaccagacagtaaatcagctaaccaaatgagtcatg---------------tt------------------------agaaggtaataaatgt--tgaga-taaaaaataaagcagga
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             6627 1179 +     53444 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I

a score=911473.000000
s hg38.chr6_GL000254v2_alt  1466998 84 +   4827813 agggagtat--gaa----gagcagtcgatatggttccagttttcaatagagctgtcaaaataggcttgagaaggtgaaaact-ggcatcaa
s panTro5.chr6             30336470 84 + 175400573 agggggtat--gaa----gagcagttgatatggctccagttttcaatagagctgtcaaaataggcttgagaaggtgaaaact-ggcatcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30570819 84 + 173848474 agggggtat--gaa----gagcagttgatatggctccagttttcaatagagctgtcaaaataggcttgagaaggtgaaaact-ggcatcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     277851 84 +   2037526 agggggtat--gaa----gagcagtcgatatggttccagttttcaatagagctgtcaaaatgggcttaagaacgtgaaaact-ggcatcaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74945012 84 + 122973662 agggggtac--gaa----gagcagtcgatatggttccagttttcaatagagctgtcaaaatgggcctgagaaggtgaaaact-ggcatcaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30822913 84 + 172585720 agggggcat--gaa----gagcagacgatatggttccagttttcaatagagctgtcaaaatgggcctgagaatgtgaAAACT-GGCATCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30112379 84 - 170955103 aggggacat--gaa----gagcaggcgatatggttccagttttcaatagagctgtcaaaatgggcctgagaatgtgaAAACT-GGCATCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     361279 84 +   1495729 agggggcat--gaa----gagcaggcgatatggttccagttttcaaaagagctgtcaaaatgggcctgagaatgtgaAAACT-GGCATCAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     462891 88 -    863181 agggggcat--gagcctttctcaggcgatatggttccagttttcaataaagctgtcaaaatgggcctgagaatgtgaAAACT-GGCATCAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29613069 84 -  71996105 agggggcat--gaa----gagcaggcgatatggttccagttttcaatagagctgtcaaaatgggcctcagaatgtgaAAACT-GGCATCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     322373 84 -    735854 agggggcat--gaa----gagcaggcgatatggttccagttttcaatagagctgtcaaaatgggcctgagaatgtgaAAACT-GGCATCAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     250629 84 -   1829203 agggggcat--gaa----gagcaggcaatatggttccagttttcaatagagcggtcaaaatgggcctgagaatgtgaAAACT-GGCATCAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30444996 83 + 171630274 agggggcag--gaa----gacca-gtgatatggttccagttttcaatagggctgtcgaaatgaacctgagaaagtgaaaacc-ggcatcaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           256579 84 +    515838 agtgggcat--gaa----gagcaggtgatatggttccagttttcaatagggctgtcaaaatggacctgagaaggtgaaaacc-ggcatcaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     885547 84 -   1771730 agtgggcat--gaa----gagcaggtgatatggttccagttttcaatagggctgtcaaaatggacctgagaaggtgaaaacc-ggcatcaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      61509 84 -    486031 agggggcat--gaa----gagcaggtgatatggttccagttttcaatagggctgtcaaaatggacctgagaaggtgaAAAAC-GGCATCAA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           295280 82 +  18854210 aagggacat--gag----aagcaggtgataaggttccaattttcaacagtgttgccaaaatgggcctgagaagatgaaaac---gcatcaa
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297             7806 86 +     53444 AAGGAGTATCAGGG----GAGTGGGTGGGA-AGTTCCCGTTATCAGTGGGGTGCTCGAAATGGGCCTGACAAGGGGCTAATCGGGCAATGA
i dasNov3.JH567297         I 1179 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I
e canFam3.chr35            26327283 2518 +  26524999 I

a score=2038075.000000
s hg38.chr6_GL000254v2_alt  1467082 190 +   4827813 cttgcaggcagtTAacagtaaggtg-ccaa--tagttgttactgctggttggtgaaattatgggtaattatattcttttatacttttctgtgctttccaaatgcagcacaatta-aca-tatttgcttttacaat-t--aaaaaaa-TCC---CACAATAAATGTTACTTAAAAAAAAAAACTGACACCTTCAGTTGTTCCC
s panTro5.chr6             30336554 190 + 175400573 cttgcaggcagtTAacagtaaggtg-ccaa--tagttgttattgctggttggttaaattatgggtaattatattcttttatacttttctgtgctttccaaatgcagcacaatta-aca-tatttgcttttacaat-t--aaaaaaa-TCC---CACAATAAATGTTACTTAAAAAAAAAAACTGACACCTTCAATTGTTCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30570903 189 + 173848474 cttgcaggcagtTAacagtaaggtg-ccaa--tagttgttattgctggttggttaaattatgggtaattatattcttttatacttttctgtgctttccaaatgcagcacaatta-aca-tatttgcttttacaat-t--aaaaaaa-TCC---CACAATAAATGTTACTT-AAAAAAAAAACTGACACCTTCAATTGTTCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     277935 190 +   2037526 cttgcaggcagtTAacagtaaggtg-ccaa--tagttgttattgctggttggtgaaattatgggtaattatattcttttatacttttctgtactttccaaatgcagcacaatta-aca-tatttgcttttacaat-t--aaaaaaaGTCC---CACAATAAATGTTACTT-TAAAAAAAAACTGACACCTTCAATTGTTCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74945096 190 + 122973662 cttgcaggcagtTAacaacaagttg-ccaa--cagttgttattgcttgttggtgaaattatgggtaattatattcttttatacttttctgtactttccaaatatagtacaatta-aca-tacttgcttttacaatgt--aaaaaaa-TCC---CACAATAAATGTTACTT-AAAAAAAAGCCTGACACCTTCAATTGGTCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30822997 190 + 172585720 TTTTCAGGCAGTTAacagcaaggtg-tcga--cagttgttactgctggttggtgaaattatgggtaactatattcttttatacttttctgtactttccaaatatagtataatta-gca-tacttgcttttacaat-t-taaaaaaa-TCC---CACAATAAATGTTACTT-AAAAAAAACACTGACACCTTCAATTGGTCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30112463 190 - 170955103 TTTTCAGGCAGTTAacagcaaggtg-tcga--cagttgtcactgctggttggtgaaattaagggtaattatattcttttatacttttctgtactttccaaatatagtacaatta-gca-tacttgcttttacaat-t-aaaaaaaa-TCC---CACAATAAATGTTACTT-AAAAAAAACACTGACACCTTCAATTGGTCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     361363 190 +   1495729 TTTTCAGGCAGTTAacagcaaggtg-tcga--cagttgttactgctggttggtgaaattaagggtaattatattcttttatacttttctgtactttccaaatatagtacaatta-gca-tacttgcttttacaat-t-taaaaaaa-TCC---CACAATAAATGTTACTT-AAAAAAAACACTGACACCTTCAATTGGTCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     462979 190 -    863181 TTTTCAGGCAGTTAacagcaaggtg-tcaa--cagttgttatggctggttggtgaaattatgggtcattatattcttttatacttttctgtactttccaaatatagtacaatta-gca-tacttgcttttacaat-t-taaaaaaa-TCC---CACAATAAATGTTACTT-AAAAAAAACACTGACACCTTCAATTGGTCCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29613153 189 -  71996105 TTTTCAGGCAGTTAACGGcaaggtg-tcga--cagttgttactgctggttggtgaaattatgggtaattatattcttttatacttttctgtactttccaaatatagtacaatta-gca-tacttgcttttacaat-t--taaaaaa-TCC---CACAATAAATGTTACTT-AAAAAAAACACTGACACCTTCAATTGGTCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     322457 189 -    735854 TTTTCAGGCAGTTAacagcaaggtg-tcaa--cagttgttacggctggttggtgaaattatgggtaattatattcttttatacttttccgtactttccaaatatagtacaatta-aca-tacttgcttttacaat-t--aaaaaaa-TCC---CACAATAAATGTTACTT-AAAAAAAAAACTGACACCTTCAATTGGTCCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     250713 190 -   1829203 TTTTCAGGCAGTTAacagcaaggtg-tcaa--cagttgttactgctggttggtgaaattatgggtaattatattcttttatacttttctgtactttccaaatatagtacaatta-aca-tacttgcttttacaat-taaaaaaaaa-TCC---CACAATAAATGTTACTT-AAAAAAAA-ACTGACACCTTCAATTGGTCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30445079 187 + 171630274 cctgcaggcagtTAacagcaaagtg-tcaa--cagctgttatagctggttggcgaaattatgggtcattatattcttttatacttttttgtgctttccgaatacagtataatta-aca-tacttgcttttacaat-t--agaaaaa-GCC---CACAATAAATGTTACTT-TA--AAAAACCTGACACCTTCAATTGGTCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           256663 187 +    515838 cctgcaggcagtTAacagcaagggg-tcaa--cagttgttattgctgattggcaaaattatgggtcattatattcttttataattttctgtgctttccaaatacagtataatta-aca-tacttgcttttataat-t--agaaaaa-GTC---CACAATAAATGTTACTT-TA--AAACACCTGACACCTTCAATTGGTCCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     885631 187 -   1771730 cctgcaggcagtTAacagcaaggtg-ccaa--cagttgttattgctggctggcaaaattatgggtcattatattctttcatacttttctgtgctttccaaatacagtataatta-aca-tacttgcttttacaat-t--agaaaaa-GCC---CACAATAAATGTTACTT-TA--AAAAACCTGACACCTTCAATTGGTCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      61593 189 -    486031 CCTGCAGGCACTTAacagcaaggag-tcaa--ccgttgttattgctggttggagaaattatgggtcattatattcttttatacttttctgtgctttccaaatacagtataatta-ata-tacttgcttttacaat-t--agaaaaa-GCC---CACAATAAATGTTACTT-TAAGAAAAACCTGACACCTTCAATTGGTCCC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           295362 176 +  18854210 cttgaaggCATGTAacagcaagatacttaa--cagttgttactgctgattgaaggaattgtg--------------tttacacttttctgtcctttccagatatattacaatgacaca-tagttgcttttacaat-t--agaaaaa-aCC---CATAGTAAATCTTACTT-TAAAAAAA-CCTCACACCTTTGATTGGCCCA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26329801 173 +  26524999 CCTGCAGGCAGATCACCACTCAACG-TCAACGCAATTCTTGCTGCTCG--GATGGGATTCTGGCTA-----ATTCTT-----CTCTTCTGTGCTTTCTGGATATATTGCAGTTA-ACA-CACTCATTTTTACAAT-T--AGAAAAA-ACC---CACAATAAATGCTACAT-AGAAA------CCACATCTTCAGTCGACTCC
i canFam3.chr35            I 2518 C 0
s dasNov3.JH567297             7892 145 +     53444 -CTTTAAAGAGTTGACAGCAAAAGG-CCAG-------------------------------GGACAAT----TTCTTTCATATT------TACCTTCTAAGTATTTTGTAATTA-ACATTAGTTGCTTTTACAAT-T--AGGAAAA-AACAAACACAGTAAATATTACTT-TTTAAAAAATC--------TCCATGGGTCCG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     142456 2344 -   1411461 I

a score=3295593.000000
s hg38.chr6_GL000254v2_alt  1467272 256 +   4827813 CATTTTCTAC-AGAATAAAGTCC-AACTCGT---------------CCTCCATTG---------GCCTCTTCCCTTTCATCTAAACTTATCTTTCATTCCTT---------AACTGTCTTTTCCAGTTGGCCTGATACCCTGTGACCCAGATTTGCCAAACagg-gttgtcagatttagcaaata-aaagtacaggacacccagttaaatatgaacgtcaga-taaacaatgaataatgcaat-atttgagacatact-aaaaaactacttgttgtacatctgaaattcaagttta
s panTro5.chr6             30336744 257 + 175400573 CATTTTCTAC-AGAATAAAGTCC-AACTTGT---------------CCTCCATTG---------GCCTCTTCCCTTTCATCTAAACTTATCTTTCATTCCTT---------AACTGTCTTTTCCAGTTGGCCTGATACCCTGTGACCCAGATTTGCCAAACagg-gttgtcagatttagcaaata-aaagtacaggacacccagttaaatatgaacgtcaga-taaacaatgaataatgcaat-atttgagacatactaaaaaaactacttgttgtacatctgaaattcaagttta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30571092 257 + 173848474 CATTTTCTAC-AGAATAAAGTCC-AACTTGT---------------CCTCCATTG---------GCCTCTTCCCTTTCATCTAAACTTATCTTTCATTCCTT---------AACTGTCTTTTCCAGTTGGCCTGATACCCTGTGACCCAGATTTGCCAAACagg-gttgtcagatttagcaaata-aaagtacaggacacccagttaaatatgaacgtcaga-taaacaatgaataatgcaat-atttgagacatactaaaaaaactacttgttgtacatctgaaattcaagttta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     278125 255 +   2037526 CATTTTCTAC-AGAATAAAGTCC-AACTCGT---------------CCTCCATTG---------GCCTCTTCCCTTTCATCTAAACTT-TCTTTCATTCCTT---------AACTGTCTTTTTCAGTTGGCCTGATACCCTGTGACCCAGATTTGCCAAACagg-gttgtcagatttagcaaata-aaagtacaggacacccagttaaatatgaacgtcaga-taaacaatgaataatgcaat-atttgagacatact-aaaaaattacttgttgtacatctgaaattcaagttta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74945286 256 + 122973662 CATTTTCTAC-ATAATAAAGTCC-AACTCCT---------------ACTCCATGG---------GCCTCTTCCCTTTCATCTAAACTTATCTGTCATTCCTT---------GACTGTCTTTTCCAGTCGGCCTGATACCCTGTGACCCAGATTTGCCAAAtagg-gttgtcagatttagcaaata-aaagtacaggacactcagttaaatatgaacttcaga-taaacagtgaataatgcaat-atttgagacacact-aaaaaattacttgttgtacatctgaaattcaagttca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30823187 256 + 172585720 CATTTGCTAC-AGAATACAGTCC-AACTCCT---------------CCTCCGTGG---------GCCTCTTCCCTTTCATCTAAACTTATCCTTCATTCCTT---------GACTGTCTTTTCCAGTCGGCCTGATACCCTGTGACCCAGATTTTCCAAAtagg-gttgtcagatttagcaaata-aaagtacaggacacccagttaaatgtgaacttcaga-taaacaatgaataatgcaat-agttgagacatact-aaaaaattatttgttgtacatctgaaattcaagttta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30112653 256 - 170955103 CATTTGCTAC-AGAATACAGTCC-AACTCCT---------------CCTCCGTGG---------GCCTCTTCCCTTTCATCTAAACTTATCCTTCATTCCTT---------GACTGTCTTTTCCAGTCGGCCTGATACCCTGTGACCCAGATTTTCCAAAtagg-gttgtcagatttagcaaata-aaagtacaggacacccagttaaatgtgaacttcaga-taaacaatgaataatgcaat-agttgagacatact-aaaaaattatttgttgtacatctgaaattcaagttta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     361553 256 +   1495729 CATTTGCTAC-AGAATACAGTCC-AACTCCT---------------CCTCCGTGG---------GCCTCTTCCCTTTCATCTAAATTTATCCTTCATTCCTT---------GACTGTCTTTTCCAGTCGGCCTGATACCCTGTGACCCAGATTTGCCAAAtagg-gttgtcagatttagcaaata-aaagtacaggacacccagttaaatgtgaacttcaga-taaacaatgaataatgcaat-agttgagacatact-aaaaaattatttgttgtacatctgaaattcaagttta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     463169 256 -    863181 CATTTTCTAC-AGAATATAGTCC-AACTCCT---------------CCTCCATGG---------GCCTCTTCCCTTTCATCTAAACTTATCCTTCATTCCTT---------GACTGTCTTTTCCAGTCGGCCTGATACCCTGTGACCCAGATTTGCCAAAtagg-gttgtcagatttagcaaata-aaagtacaggacacccagttaaatgtgaacttcaga-taaacaatgcataatgcaat-atttgagacatact-aaaaaattatttgttgtacatctgaaattcaagttta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29613342 256 -  71996105 CATTTTCTAC-AGAATATAGTCC-AACTCCT---------------CCTCCATGG---------GCCTCTTCCCTTTCATCTAAACTTATCCTTCATTCCTT---------GACTGTCTTTTCCAGTCGGCCTGATACCCTGTGACCCAGATTTGCCAAACagg-gttgtcagatttagcaaata-aaagtacaggacacccagttaaatgtgaacttcaga-taaacaatgaataatgcaat-atttgagacatatt-aaaaaattatttgttgtacatctgaaattcaagttta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     322646 256 -    735854 CATTTTCTAC-AGAATATAGTCC-AACTCCT---------------CCTCCATGG---------GCCTCTTCCCTTTCATCTAAACTTATCCTTCATTCCTT---------GACTGTCTTTTCCAGTCGGCCCAATACCCTGTGACCCAGATTTGCCAAAtagg-gttgtcagatttagcaaata-aaagtacaggacacccagttaaatgtgaacttcaga-taaacaatgcataatgcaat-atttgagacatact-aaaaaattatttgttgtacatctgaaattcaagttta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     250903 256 -   1829203 CATTTTCTAC-AGAATACAGTCC-AACTCCT---------------CCTCCATGG---------GCCTCTTCCCTTTCATCTAAACTTATCCTTCATTCCTT---------GACTGTCTTTTCCAGTCGGCCTGATACCCTGTGACCCAGATTTGCCAAAtagg-gttgtcagatttagcaaata-aaagtacaggacacccagttaaatgtgaacttcaga-taaacaatgaataatgcaat-atttgagacatact-aaaaaattatttgttgtacatctgaaattgaagttta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30445266 255 + 171630274 TATTTTCTAC-AAAATAAAGTCC-AACTCTT---------------CCTCCATGG---------GCCTCTTCCCTTTCATCTAAACTTATCTTTCATTCCTC---------TAATGTCTTTTCCAGTCAGCCTGATACCCTGTGACCCAGATTTGCCAAAtagg-gtttccagatttagcaaata-aaagtaaagggcacccagttatatatgaacttcaga-taaacaat-aatagtgcaat-atttgaggcatacg-aaaaaattatttgttgtacatctaaaattcaggttta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           256850 256 +    515838 TATTTTCTAC-AAAATAAAGCCT-AACTCTT---------------CCTCCATGG---------GCCTCTTCCCTTTCATCTAAACTTATCTTTCATTCCTC---------GACTGTTCTTTCCAGTCAGCCTGATACCCTGTGACCCAGATTTGCCAAAtagg-gctgccagatttagcaaata-aaagtaaagggcacccagttaaatatgaacttcaga-taaacaacaaataatgcagt-atttgagacatact-aaaaaattatttgttgcacatctaaaattcaagttta
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     885818 256 -   1771730 TATTTTCTAC-AAAATAAAGTCT-AACTCTT---------------CCTCCACGG---------GCCTCTTCCCTTTCATCTAAACTTATCTTTCATTCCTC---------GACTGTCTTTTCCAGTCAGCCTGATACCCTGCGACCCAGATTTGCCAAAtagg-gttgccagatttagcaagta-aaagtaaaggacacccagttaaataggaacttcaga-taaacaatgaataatgcgat-atttgagacatact-aaaaaattatttgttgcacatctaaaattcaagttta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      61782 257 -    486031 TATTTTCTACAAAAATAAAGTCT-AACTCCT---------------CCTCCATGG---------GCCTCTTCCCTTTCATCTAAACTTATCTTTCATTCCTC---------GACTGTCTTTCCCAGTCAGCCTGATACCCTGTGACCCAGATTTGCCATAtagg-gttgccagatttagcaaata-aaagtaaaggacacccagttaaatatgaacttcaga-taaacaaggaataatgcaat-atttgagacatact-aaaaaattatttgtcgtacatctaaaattcaagttta
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     144800 257 -   1411461 CATTTTCTAC-AGAATGAAGTCCAAACTCCT---------------CCTCCATAG---------GTCCCCTGCCTTCCACCTAAATTTACCTTCTGTTCCTC-------AAGACTGTCTTTCCCAGTCTGACCGATACTCTGTGGCCCAGATTTGCCAAGtaag-gttgccagattcagcaaata-aaagta-aagatgccttgttaaatatgaatttcaga-taaacaa-gaatgatgcaat-atttgagacatact-aaaaaattatttgttgtacatctgaaattccagttta
i proCoq1.NW_012149775v1   I 2344 I 35
s otoGar3.GL873550           295538 256 +  18854210 CATTTTCTAC-AGAATAAAGGCTAAACTCCT---------------CCTCCATGT---------GCCTCCTGCTTTCCTCCTAAACTTACCTTTTTTTCCTC-------AAGACTATCTTTTCCAGTCGGAATGATACTCTATGACCCTGATTTCCCAAGGAGGTgttgccagattcagcaaata-aagggacaggacaccatgttaaatataaatttcaga-aaacaat-gaataatgcaat-atttgagacatgtt----aaattatttgttgtatatctgaaattctagttta
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26329974 239 +  26524999 CGATTTCTGT-GGGAGAGTGTCTGAACTGCTGCTGGTGTTTACGGGCCTCTAGGG---------GCCTCCGGCC-TCCACCCAACCTCATTGTTAGTTCCTCTCTGC-ACACACTGTCTTTCCCAGTCACACAGTTCCTTTGTGACCCACACTGGCCAAGGagg-gttgccagatttggcaaaaagaaagtgtgagacacc-agttaaacctgaacttcaga-tga----taaatgatacaataagttaagacatact--------------------------------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297             8037 259 +     53444 GGTTTTCTAC-AGGACAAAGTTTGCACTCCT---------------GATAGCTGGAGCCTGGCAGGCTCCTCCCTT----CTCGACTGATCTTTAGCTCCTCCTGGAGATAAAGTGTCCTTTCCAGGAAGGCTGATGCTCTATGACTCGAATTTGCCAGGAaag-gttgccag---tcacagata-aaaatagaggacaccgggtcaaatatgaatttcagagtaaac-----atagtgcaat-atttagggcacacc---tatactattacttgtttatctgaa---caaattta
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I

a score=390378.000000
s hg38.chr6_GL000254v2_alt  1467528 37 +   4827813 actgagcatcgtatgtttttcctgacaaTGTGACAAG
s panTro5.chr6             30337001 37 + 175400573 actgagcatcgtatgtttttcctgacaaTGTGACAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30571349 37 + 173848474 actgagcatcgtatgtttttcctgacaaTGTGACAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     278380 37 +   2037526 actgagcatcgtatgtttttcctgacaaTGTGACAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74945542 37 + 122973662 actgagcatcatatgtttttcctggcaaTGTGACAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30823443 37 + 172585720 actgagcattgtatgtttttcctagcaatcTGACAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30112909 37 - 170955103 actgagcattgtatgcttttcctagcaatcTGACAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     361809 37 +   1495729 actgagcattgtatgcttttcctagcaatcTGACAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     463425 37 -    863181 actgagcattgtatgtttttcctagcaacATGACAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29613598 37 -  71996105 actgagcattgtatgtttttcctagcaatcTGACAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     322902 37 -    735854 actgagcattgtatgtttttcctagcaacATGACAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251159 37 -   1829203 actgagcattgtatgtttttcctagcaaTATGACAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30445521 37 + 171630274 actgagcatcgtgtgtttttcctggcaaTGTGACAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           257106 37 +    515838 actgagcattgtgtgtttctcctggcaaTGTGACAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     886074 37 -   1771730 actgagcattgtgtgtttttcctggcaaTGTGACAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      62039 35 -    486031 actgagcatc--gtgtttttcctggcaaTGTGACAAG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           295795 37 +  18854210 agtgagcatcctgtatcttatctggcaaAGCTATAAA
i otoGar3.GL873550         I 1 C 0
s canFam3.chr35            26330213 11 +  26524999 -------------tattttt------------aaaa-
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297             8296 37 +     53444 actgagcatcgcatattttatctggtaccactaCAAG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     145057 35 -   1411461 I

a score=1208806.000000
s hg38.chr6_GL000254v2_alt  1467565 106 +   4827813 TGATCTTCCTTCCCC-TGTGCTGGAATAATCTCTTTTCCATCTTTCCAAATT--TTTCCAGCTAATCAGAGGGTGGGGAGGAGGGATGGATGTGGGTGGGAATGAGAGA
s panTro5.chr6             30337038 106 + 175400573 TGTTCTTCCTTCCCC-TGTGCTGGAATAATCTCTTTTCCATCTTTCCAAATT--TTTCCAGCTAATCAGAGGGTGGGGAGGAGGGATGGATGTGGGTGGGAATGAGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30571386 106 + 173848474 TGTTCTTCCTTCCCC-TGTGCTGGAATAATCTCTTTTCCATCTTTCCAAATT--TTTCCAGCTAATCAGAGGGTGGGGAGGAGGGATGGATGTGGGTGGGAATGAGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     278417 106 +   2037526 TGATCTTCCTTCCCC-TGTGCTGGAATAATCTCTTTTCCATCTTTCCAAATT--TTTCCAGCTAATCAGAGGGTGGGGAGGAGGGATGGATGTGGGTGGGAATGAGAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74945579 106 + 122973662 TGATCTTCCTTCCCC-TGTGCTGGAATAATCTCTTTTCCATCTTTCCAAATT--TTTCCAGCTGATCAGAGGATGGGGAGGAGGGATGGATGTGGGTGGGAATGAGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30823480 106 + 172585720 TAATCTTCCTTCCCC-TGTGCTGGAATAATCTCTTTTCCATCTTTCCAAATT--TTTCCAGCTGATCAGAGGATGGGGAGGAGGGATGGATGTGGGTGGGAATGAAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30112946 106 - 170955103 TGATCTTCCTTCCCC-TGTGCTGGAATAATCTCTTTTCCATCTTTCCAAATT--TTTCCAGCTGATCAGAGGGTGGGGAAGAGGGATGGATGTGGGTGGGAATGAAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     361846 106 +   1495729 TGATCTTCCTTCCCC-TGTGCTGGAATAATCTCTTTTCCATCTTTCCAAATT--TTTCCAGCTGATCAGAGGGTGGGGAAGAGGGATGGATGTGGGTGGGAATGAAAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     463462 106 -    863181 TAATCTTCCTTCCCC-TGTGCTGGAATAATCTCTTTTCCATCTTTCCAAATA--TTTCCAGCTGATCAGAGGGTGGGGAGGAGGGATGGATGTGGGTGGGAATGAAAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29613635 106 -  71996105 TGATCTTCCTTCCCC-TGTGCTGGAATAATCTCTTTTCCATCTTTCCAAATT--TTTCCAGCTGATCAGAGGGTGGGGAGGAGGGATGGATGTGGGTGGGAATGAAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     322939 106 -    735854 TAATCTTCCTTCCCC-TGTGCTGGAATAATCTCTTTTCCATCTTTCCAAATA--TTTCCAGCTGATCAGAGGGTGGGGAGGAGGGATGGATGTGGGTGGGAATGAAAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251196 106 -   1829203 TGATCTTCCTTCCCC-TGTGCTGGAATAATCTCTTTTCCATCTTTCCAAATT--TTTCCAGCTGATTAGAGGGTGGGGAGGAGGGATGGATGTGGGTGGGAATGAAAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30445558 104 + 171630274 TGACCTTCCCT--CC-TGTGCTGGAATAATCTCCTTTTCATTTTTTGAAATT--TTTGCAACTTATCAGAGAGCAGGGTGGAGAGATGGGTGCGGGTGGGAATGCAAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           257143 106 +    515838 TGATCTTCCCTCCCC-TGTGCTGGAATTATCTCCTTTCCATTTTTTGAAATT--TTTGCAACTGATCAGAGAGCATGGAGGCGGGATGGGTGCGGATGGGAATGCAAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     886111 106 -   1771730 TGATCTTCCCTCCCC-TGTGCTGGAATTATCTCCTTTCCATTTTTTGAAATT--TTTGCAACTGATCAGAGAGTAGGGAGGAGGGATGGGTGTAGGTGGGAATGCAAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      62074 106 -    486031 TGATCTTCCCTCCCC-TGTGCTGGAATTATCTCCTTTCCATTTTTTGAAATT--TTTGCTGCTGATCAGAGAGCAAGAATGAGGGATGGGTGCAGGTGGAAATGCAAGA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     145092 107 -   1411461 TGATTGTCCTTCCCCATGTGCTGAAATAATCTCTTTTCCATCTTCCCCAGTT--TTTCCAAGTAACCAGCGGGTGGGGAAGAGGGGTGAGTGTGGCTGGGGATGAAAGA
i proCoq1.NW_012149775v1   I 35 I 80
s otoGar3.GL873550           295832  84 +  18854210 TGATCCTCCTTCCCCATGTGCTAGAATAATCTCTTCTCTATCTTCCCCAATT--TTTTCAGGTAACCAGAAGGTGAGGAGGAGGGG-----------------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26330224  62 +  26524999 -------------------------------------agatttttaaaaatctatttatacatga-cagacacagggagacagagacgcaagca---------gagaga
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297             8333  93 +     53444 -TCACTTCCTTCCCCATCTGCTGGAATAG----CTTTTCATCTTCCCAAACC--TTTCCATTAAACCAGAGGACGGGGCTGGAG---------AGGTTGGGAGGGAGGA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I

a score=90123.000000
s hg38.chr6_GL000254v2_alt  1467671 8 +   4827813 TAAGCCTG
s panTro5.chr6             30337144 8 + 175400573 TAAGCCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30571492 8 + 173848474 TAAGCCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     278523 8 +   2037526 TAAGCCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74945685 8 + 122973662 TAAGCCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30823586 8 + 172585720 TAAGCCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113052 8 - 170955103 TAAGCCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     361952 8 +   1495729 TAAGCCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     463568 8 -    863181 TAAGCCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29613741 8 -  71996105 TAAGCCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     323045 8 -    735854 TAAGCCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251302 8 -   1829203 TAAGCCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30445662 8 + 171630274 CAAGCCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           257249 8 +    515838 CAAGCCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     886217 8 -   1771730 CAAGCCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      62180 8 -    486031 CAAGCCTG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           295916 8 +  18854210 TGAGCATG
i otoGar3.GL873550         C 0 I 23
s canFam3.chr35            26330286 8 +  26524999 gaagcagg
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297             8426 4 +     53444 CAAG----
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     145199 80 -   1411461 I

a score=260287.000000
s hg38.chr6_GL000254v2_alt  1467679 24 +   4827813 CCTATCAACTCCTGTATTTAATAT
s panTro5.chr6             30337152 24 + 175400573 CCTATCAACTCCTGTATTTAATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30571500 24 + 173848474 CCTATCAACTCCTGTATTTAATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     278531 24 +   2037526 CCTATCAACTCCTGTATTTAATAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74945693 24 + 122973662 CCTATCAACTCCTGTATTTAATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30823594 24 + 172585720 CCTATCAACTCCTGTATTTAATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113060 24 - 170955103 CCTATCAACTCCTGTATTTAATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     361960 24 +   1495729 CCTATCAACTTCTGTATTTAATAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     463576 24 -    863181 CCTATCAACTCCTGTATTTAATAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29613749 24 -  71996105 CCTATCAACTCCTGTATTTAATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     323053 24 -    735854 CCTATCAACTCCTGTATTTAATAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251310 24 -   1829203 CCTATCAACTGCTGTATTTAATAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30445670 24 + 171630274 CCTATCAACTCCTATATTTAATAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           257257 24 +    515838 CCTATCAACTCCTGTGTTTAATAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     886225 24 -   1771730 CCTATCAACTCCTATATTTAATAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      62188 24 -    486031 CCTATCAACTCCCATATTTAATAT
i aotNan1.NW_018496901v1   C 0 C 0
s canFam3.chr35            26330294  8 +  26524999 --------ctcc--------acat
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297             8430 23 +     53444 CCCAGCAGCTCCTGCA-CTAACAC
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     145199 80 -   1411461 I
e otoGar3.GL873550           295924 23 +  18854210 I

a score=79345.000000
s hg38.chr6_GL000254v2_alt  1467703 9 +   4827813 AGGATATTC
s panTro5.chr6             30337176 9 + 175400573 AAGATATTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30571524 9 + 173848474 AAGATATTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     278555 9 +   2037526 AAGATATTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74945717 9 + 122973662 AAGATATTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30823618 9 + 172585720 AAGATATTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113084 9 - 170955103 AAGATATTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     361984 9 +   1495729 AAGATATTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     463600 9 -    863181 AAGATATTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29613773 9 -  71996105 AAGATATTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     323077 9 -    735854 AAGATATTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251334 9 -   1829203 AAGATATTC
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     886249 9 -   1771730 AAGATATTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      62212 9 -    486031 AAGATATTC
i aotNan1.NW_018496901v1   C 0 C 0
s dasNov3.JH567297             8453 9 +     53444 GAGGTGCTC
i dasNov3.JH567297         C 0 I 18
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     145199 80 -   1411461 I
e canFam3.chr35            26330302 0 +  26524999 C
e saiBol1.JH378341           257281 0 +    515838 C
e otoGar3.GL873550           295924 23 +  18854210 I
e calJac3.chr4             30445694 0 + 171630274 C

a score=49106.000000
s hg38.chr6_GL000254v2_alt  1467712 6 +   4827813 CTGGGg-
s panTro5.chr6             30337185 6 + 175400573 CTGGGg-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30571533 6 + 173848474 CTGGGg-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     278564 6 +   2037526 CTGGGg-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74945726 6 + 122973662 CTAGGg-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30823627 6 + 172585720 CTGGGg-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113093 6 - 170955103 CTGGGg-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     361993 6 +   1495729 CTGGGg-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     463609 6 -    863181 CTGGGg-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29613782 6 -  71996105 CTGGGg-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     323086 6 -    735854 CTGGGg-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251343 6 -   1829203 CTGGGg-
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     886258 6 -   1771730 CTGGGG-
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496901v1      62221 6 -    486031 CTGGGG-
i aotNan1.NW_018496901v1   C 0 I 1
s canFam3.chr35            26330302 5 +  26524999 --aggga
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             8462 18 +     53444 I
e proCoq1.NW_012149775v1     145199 80 -   1411461 I
e saiBol1.JH378341           257281 0 +    515838 C
e otoGar3.GL873550           295924 23 +  18854210 I
e calJac3.chr4             30445694 0 + 171630274 C

a score=42967.000000
s hg38.chr6_GL000254v2_alt  1467718 8 +   4827813 gccaggtg
s panTro5.chr6             30337191 8 + 175400573 gccaggtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30571539 8 + 173848474 gccaggtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     278570 8 +   2037526 gccaggtg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74945732 8 + 122973662 gccaggtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30823633 8 + 172585720 gccggggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113099 8 - 170955103 gccgggca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     361999 8 +   1495729 gccgggca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     463615 8 -    863181 gccgggcg
i cerAty1.NW_012002535v1   C 0 I 494
s chlSab2.chr17            29613788 8 -  71996105 gccgggcg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     323092 8 -    735854 gccgggcg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251349 8 -   1829203 gccaggcg
i colAng1.NW_012115577v1   C 0 C 0
s canFam3.chr35            26330307 8 +  26524999 gcccgatg
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             8462 18 +     53444 I
e proCoq1.NW_012149775v1     145199 80 -   1411461 I
e saiBol1.JH378341           257281 0 +    515838 C
e otoGar3.GL873550           295924 23 +  18854210 I
e aotNan1.NW_018496901v1      62227 1 -    486031 I
e cebCap1.NW_016107755v1     886264 1 -   1771730 I
e calJac3.chr4             30445694 0 + 171630274 C

a score=307089.000000
s hg38.chr6_GL000254v2_alt  1467726 56 +   4827813 tggtggcttatgcctgtaatcccag----------cactttgggaggccaaggcgggtggatcacc
s panTro5.chr6             30337199 56 + 175400573 tggtggctcatgcctgtaatcccag----------cactttgggaggccaaggtgggtggatcacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30571547 56 + 173848474 tggtggctcatgcctgtaatcccag----------cactttgggaggccaaggtgggtggatcacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     278578 55 +   2037526 tggtggctcatgcctgtaat-ccag----------cactttgggaggccaaggcgggtggatcacc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74945740 56 + 122973662 cagtggctcacgcctgtaatcccag----------cactttgggagggtgaggtgggaggatcacc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30823641 56 + 172585720 tggtggttcatgcctgtaatcccag----------cactttgggaggccaaggcgggcagatcacc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113107 56 - 170955103 cggtggttcatgcctgtaatcccag----------cactttgggaggccaaggcgggcagatcacc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     362007 56 +   1495729 cggtggttcatgcctgtaatcccag----------cactttgggaggccaaggcgggcagatcacc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     464117 56 -    863181 cggtggttcatgcctgtaatcccag----------cactttgggaggccaaggcgggcagatcacc
i cerAty1.NW_012002535v1   I 494 C 0
s chlSab2.chr17            29613796 56 -  71996105 cggtggttcatgcctgtaatcccag----------cactttgggaggccaaggcgggcagatcacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     323100 56 -    735854 cagtggttcatgcctgtaatcccag----------cactttgggaggctaaggcgggcagatcacc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251357 56 -   1829203 ccatggttcatgcctacaatcccag----------cactttgggagaccaaggcgggcagatcaag
i colAng1.NW_012115577v1   C 0 C 0
s canFam3.chr35            26330315 57 +  26524999 ---tgggacttg------atcccaggccacaggatcactccttgggccaaaggcaggcgctccacc
i canFam3.chr35            C 0 I 335
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             8462 18 +     53444 I
e proCoq1.NW_012149775v1     145199 80 -   1411461 I
e saiBol1.JH378341           257281  0 +    515838 C
e otoGar3.GL873550           295924 23 +  18854210 I
e aotNan1.NW_018496901v1      62227  1 -    486031 I
e cebCap1.NW_016107755v1     886264  1 -   1771730 I
e calJac3.chr4             30445694  0 + 171630274 C

a score=218799.000000
s hg38.chr6_GL000254v2_alt  1467782 44 +   4827813 tgaggtcagggggttc----aagaccagcctggccaacatggtgaaac
s panTro5.chr6             30337255 43 + 175400573 tgaggtca-ggggttc----aagaccagcctggccaacatggtgaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30571603 43 + 173848474 tgaggtca-ggggttc----aagaccagcctggccaacatggtgaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     278633 43 +   2037526 tgaggtca-ggggttc----aagaccagcctggccaacacggtgaaac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74945796 42 + 122973662 tga------agagctctcctatctcctacttggccaacatggtgaaac
i nomLeu3.chr1a            C 0 I 127
s rheMac8.chr4             30823697 43 + 172585720 tgaggtca-ggggttc----aagaccaacctggccagcatggtgaaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113163 43 - 170955103 tgaggtca-ggggttc----aagaccagcctggccagcatggtgaaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     362063 43 +   1495729 tgaggtca-ggggttc----gagaccagcctggccagcatggtgaaac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     464173 43 -    863181 tgaggtca-ggggttc----gagaccagcctggccagcatggtgaaac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29613852 43 -  71996105 tgaggtca-ggggttc----gagaccagcctggccagcatggtgaaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     323156 43 -    735854 tgaggtga-ggggttc----gagaccagcctggccagcatggtgaaac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251413 43 -   1829203 tgaggtca-ggggttc----gagaccagcctggccagcatggtgaaac
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             8462 18 +     53444 I
e proCoq1.NW_012149775v1     145199 80 -   1411461 I
e canFam3.chr35            26330372 335 +  26524999 I
e saiBol1.JH378341           257281  0 +    515838 C
e otoGar3.GL873550           295924 23 +  18854210 I
e aotNan1.NW_018496901v1      62227  1 -    486031 I
e cebCap1.NW_016107755v1     886264  1 -   1771730 I
e calJac3.chr4             30445694  0 + 171630274 C

a score=656560.000000
s hg38.chr6_GL000254v2_alt  1467826 140 +   4827813 cttgtctctact-aaaatacaaaaattagctggatgtggtggcgcatgcctgtagtcccagttactcgggaagctgaggcaggagaatcacttgaacctgggaggcagaggttgcagtgagccgagattgcaccactgcac
s panTro5.chr6             30337298 140 + 175400573 cttgtgtctact-aaaatacaaaaattagctggatgtggtggcgcatgcctgtagtcccagttactcgggaagctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccgagattgcaccactgcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30571646 140 + 173848474 cttgtctctact-aaaatacaaaaattagctggatgtggtggcgcatgcctgtagtcccagttactcgggaagctgaggcaggggaatcacttgaacccgggaggcagaggttgcagtgagccgagattgcaccactgcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     278676 140 +   2037526 cttgtctctact-aaaatacaaaaattagctggatgtggtggcgcatgcctgtagtcccagttactcgggaagctgaggaaggagaatcacttgaacctgggaggcagaggttgcagtgagccgagattgcaccactgcac
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30823740 141 + 172585720 cttgtctctactaaaaatacaagaattagctgggcatggtggtgcgtgcctgtagttccagttactcgggaagctgaggcaggagaatcgcttgaacatgggaggcagaggttgcagtgagccgagatcgcgccactgcac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113206 141 - 170955103 cttgtgtctactaaaaatacaagaattagctgggcatggtggcgcatgcctgtagttccagttactcgggaagctgaggcaggagaatcgcttgaacatgggaggcagaggttgcagtgagccgagatcatgccactgtac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     362106 141 +   1495729 cttgtgtctactaaaaatacaagaattagctgggcatggtggcgcatgcctgtagttccagttactcgggaagctgaggcaggagaatcgcttgaacatgggaggcagaggttgcagtgagccgagatcatgccactgtac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     464216 141 -    863181 cttgtgtctactaaaaatacaagaattagctaggcatggtggcgcgtgcctgtagttccagttactcaggaagctgaggcaggagaatcgcttgaacatgggaggcagaggttgcagtgagccgagatcatgccactgcac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29613895 141 -  71996105 cctgtctctactaaaaatacaagaattagctaggcatggtggcgcgtgcctgtagttccagttactcgggaagctgaggcaggagaatcgcttgaacatgggaggcagaggttgcagtgagccaagatcatgccactgcac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     323199 141 -    735854 cttgtctctactaaaaatacaagaattagctaggcatggtggcgcgtgcctgtagttccagttactcaggaagctgaggcaggagaatcgcttgaacatgggaggcagaggttgcagtgagccgagatcatgccactgcac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251456 141 -   1829203 cttgtctctactaaaaatacaagaattagctgggcatggtggcacatgcctgtagttccagttactcgggaagctgaggcaggagaatcgcttgaacatgggaggcagaggttgcagtgagccgagatcatgccactgcac
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             8462  18 +     53444 I
e proCoq1.NW_012149775v1     145199  80 -   1411461 I
e canFam3.chr35            26330372 335 +  26524999 I
e saiBol1.JH378341           257281   0 +    515838 C
e otoGar3.GL873550           295924  23 +  18854210 I
e aotNan1.NW_018496901v1      62227   1 -    486031 I
e cebCap1.NW_016107755v1     886264   1 -   1771730 I
e calJac3.chr4             30445694   0 + 171630274 C
e nomLeu3.chr1a            74945838 127 + 122973662 I

a score=146146.000000
s hg38.chr6_GL000254v2_alt  1467966 55 +   4827813 tccagcctggtgacagagtgagactcctcaccaaaaa-aaaaaaaaaag---------a-------------aaaaaa
s panTro5.chr6             30337438 60 + 175400573 tccagcctggtgacagagtgagactcctcaccaaaaagaaaaaaaaaac---------aaaa---------caaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30571786 59 + 173848474 tccagcctggtgacagagtgagactcctcaccaaaaagaaaaacaaaac---------aaaa----------caaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     278816 69 +   2037526 tccagcctggtgacagagtgagactcctcaccaaaaaaaaaaaaaaaaa---------aaaaaaaaaaaaaaaaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30823881 43 + 172585720 tacagcctggtaacagagtgagactcctctc-------------aaaaa---------a-------------aaaaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113347 50 - 170955103 tccagcctggtaacagagtgagactcttctc------aaaaaaaaaaaa---------a-------------aaaaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     362247 56 +   1495729 tccagcctggtaacagagtgagactcttctcaaaaaaaaaaaaaaaaaa---------a-------------aaaaag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     464357 43 -    863181 tccagcctggtaacagagtgagactcctctc-------------aaaaa---------g-------------aaaaag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29614036 52 -  71996105 tccagcctggtaacagagtgagactcctctc-------------aaaaaaaaaaaaaga-------------aaaaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     323340 43 -    735854 tccagcctggtaacagagtgagactcctctc-------------aaaaa---------g-------------aaaaag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251597 47 -   1829203 tctagcctggtaacagagtgagactcctctc---------aaaaaaaag---------a-------------aaaaag
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           295947 34 +  18854210 TCAAATCTTATGTTAGTGTAAGATCCTT----------------AGGAA---------A-------------------
i otoGar3.GL873550         I 23 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             8462 18 +     53444 I
e proCoq1.NW_012149775v1     145199 80 -   1411461 I
e canFam3.chr35            26330372 335 +  26524999 I
e saiBol1.JH378341           257281  0 +    515838 C
e aotNan1.NW_018496901v1      62227  1 -    486031 I
e cebCap1.NW_016107755v1     886264  1 -   1771730 I
e calJac3.chr4             30445694  0 + 171630274 C
e nomLeu3.chr1a            74945838 127 + 122973662 I

a score=125301.000000
s hg38.chr6_GL000254v2_alt  1468021 24 +   4827813 aaGATATTCCTGGGGAGTAGATGG
s panTro5.chr6             30337498 24 + 175400573 aaGATATTCCTGGGGAGTAGTTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30571845 24 + 173848474 aaGATATTCCTGGGGAGTAGTTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     278885 24 +   2037526 aaGATATTCCTGGGGAGTAGTTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30823924 24 + 172585720 aaGATATTCCTGGGGAGTGGTTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113397 24 - 170955103 aaGATATTCCTGGAGATTGGTTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     362303 24 +   1495729 aaGATATTCCTGGAGATTGGTTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     464400 24 -    863181 aaGATATTCCTGGGGAGTGGTTGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29614088 24 -  71996105 aaGATATTCCTGGGGAGTGGTTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     323383 24 -    735854 aaGATATTCCTGGGGAGTGGTTGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251644 24 -   1829203 aaGATATTCCTGGGGAGTGGTTGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30445694 16 + 171630274 AAGATATTCTTGGGGA--------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           257281 16 +    515838 AAGATATTCCTGGGGA--------
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           295981 15 +  18854210 AGGGTGCAGCAGGTG---------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             8462 18 +     53444 I
e proCoq1.NW_012149775v1     145199 80 -   1411461 I
e canFam3.chr35            26330372 335 +  26524999 I
e aotNan1.NW_018496901v1      62227  1 -    486031 I
e cebCap1.NW_016107755v1     886264  1 -   1771730 I
e nomLeu3.chr1a            74945838 127 + 122973662 I

a score=95889.000000
s hg38.chr6_GL000254v2_alt  1468045 12 +   4827813 GTGGTGGAGGGC
s panTro5.chr6             30337522 12 + 175400573 GTGGTGGAGGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30571869 12 + 173848474 GTGGTGGAGGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     278909 12 +   2037526 GTGGTGGAGGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30823948 12 + 172585720 GTGGTGGAGGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113421 12 - 170955103 GTGGTAGAGGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     362327 12 +   1495729 GTGGTAGAGGGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     464424 12 -    863181 GTGGTGGAGGGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29614112 12 -  71996105 GTAGTGGAGGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     323407 12 -    735854 GTGGTGGAGGGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251668 12 -   1829203 GTGGTGGAGGGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30445710 12 + 171630274 GTGGTGGGGGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           257297 11 +    515838 GTGGC-GGGGGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     886265 12 -   1771730 GTGGTGGCGGGT
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496901v1      62228 12 -    486031 GTGGTGGGGGGT
i aotNan1.NW_018496901v1   I 1 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             8462 18 +     53444 I
e proCoq1.NW_012149775v1     145199 80 -   1411461 I
e canFam3.chr35            26330372 335 +  26524999 I
e otoGar3.GL873550           295996  0 +  18854210 C
e nomLeu3.chr1a            74945838 127 + 122973662 I

a score=322558.000000
s hg38.chr6_GL000254v2_alt  1468057 36 +   4827813 GGGGGAACAAGGGTGGGGTATTGT-TAAAACATCGTA
s panTro5.chr6             30337534 36 + 175400573 GGGGGAACAAGGATGGGGTATTGT-AAAAACATCGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30571881 36 + 173848474 GGGGGAACAAGGATGGGGTATTGT-AAAAACATCGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     278921 36 +   2037526 GGGGGAACAAGGATGGCGTATTGT-AAAAACATCATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74945965 37 + 122973662 GGGGAAAAAAGGGTGGGGCATTTTAAAAAACATCGTA
i nomLeu3.chr1a            I 127 C 0
s rheMac8.chr4             30823960 36 + 172585720 GGGGGCACAAGGGTGGGGTATTGT-AAAAACATCATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113433 36 - 170955103 GGGGGCACAAGGGTGGGGTATTGT-AAAAACGTTGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     362339 36 +   1495729 GGGGGCACAAGGGTGGGGTATTGT-AAAAACGTTGTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     464436 36 -    863181 GGGGGCACAAGGGTGGGGTATTGT-AAAAACATCGTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29614124 36 -  71996105 GGGGGCACAAGGGTGGGATATTGT-AAAAACATCGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     323419 36 -    735854 GGGGGCACAAGGGTGGGGTATTGT-AAAAACATCGTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251680 36 -   1829203 GGGGACACAAGGGTGGGGTATTGT-AAAATCATCGTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30445722 36 + 171630274 AGAGGGACAAGGATGGGGCATTGT-GAAAACATTGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           257308 36 +    515838 AGGGGGACAAGGATGGGGCATTGT-GAAAACATCGTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     886277 36 -   1771730 AGGGAGACAAGGATGGGGCATTGT-GAAAACATCGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      62240 36 -    486031 AGGGGGACAAGGATAGGGCATTGT-GAAAACATCGTA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           295996 22 +  18854210 -------TAAGGAAGGGGCATGGT-TGAAA-------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             8462 18 +     53444 I
e proCoq1.NW_012149775v1     145199 80 -   1411461 I
e canFam3.chr35            26330372 335 +  26524999 I

a score=35176.000000
s hg38.chr6_GL000254v2_alt  1468093 3 +   4827813 AAA
s panTro5.chr6             30337570 3 + 175400573 AAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30571917 3 + 173848474 AAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     278957 3 +   2037526 AAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74946002 3 + 122973662 AAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30823996 3 + 172585720 AAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113469 3 - 170955103 AAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     362375 3 +   1495729 AGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     464472 3 -    863181 AAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29614160 3 -  71996105 AAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     323455 3 -    735854 AAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251716 3 -   1829203 AAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30445758 3 + 171630274 AAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           257344 3 +    515838 AAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     886313 3 -   1771730 AAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      62276 3 -    486031 AAA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     145279 3 -   1411461 AAA
i proCoq1.NW_012149775v1   I 80 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             8462 18 +     53444 I
e canFam3.chr35            26330372 335 +  26524999 I
e otoGar3.GL873550           296018 0 +  18854210 C

a score=779449.000000
s hg38.chr6_GL000254v2_alt  1468096 70 +   4827813 GGGCTC-CT-----TTTTTGATCTTGAATTATGACTTTCCTATAG-ATAAAAATTGCACCTTTAATCAGAGAACAAT
s panTro5.chr6             30337573 70 + 175400573 GGGCTC-CT-----TTTTTGATCTTGAATTATCACTTTCCTATAG-ATAAAAATTGCACCTTTAATCGGAGAACAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30571920 70 + 173848474 GGGCTC-CT-----TTTTTGATCTTGAATTATGACTTTCCTATAG-ATAAAAATTGCACCTTTAATCGGAGAACAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     278960 70 +   2037526 GGGCTC-CT-----TTTTTGATCTTGAATTATGACTTTCCTATAG-ATAAAAATTGCACCTTTAATCGGAGAACAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74946005 72 + 122973662 TGGCTCATT-----TTTTTGATCTTGAATTATGACTTTCCTATAGAAAAAAAATTGCACCTTTAATTGGAGAACAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30823999 69 + 172585720 -GGCTC-CT-----TTTTTGATCTTGAATTATGACTTTCCTATAG-ATAAAAATGTCACCTTTAATCAGAGAACAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113472 70 - 170955103 GGGCTC-CT-----TTTTTGATCTTGAATTATGACTTTCCTATAG-ATAAAAATGTCACCTTTAATCAGAGAACAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     362378 70 +   1495729 GGGCTC-CT-----TTTTTGATCTTGAATTATGACTTTCCTATAG-ATAAAAATGTCACCTTTAATCAGAGAACAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     464475 70 -    863181 GGGCTC-CT-----TTTTTTATCTTGAATTATTACTTTCCTATAG-ATAAAAATGTCACCTTTAATCAGAGAACAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29614163 70 -  71996105 GGGCTC-CT-----TTTTTGATCTTGAATTATGACTTTCCTATAG-ATAAAAATGTCACCTTTAATCAGAGAACAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     323458 70 -    735854 GGGCTC-CT-----TTTTTGATCTTGAATTATTACTTTCCTATAG-ATAAAAATGTCATCTTTAATCAGAGAACAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251719 70 -   1829203 GGGCTC-CT-----TTTTTGATCTTGAATTATGACTTTCCTATAG-ATAAAAATTTCACCTTTAATCAGAGAACAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30445761 75 + 171630274 GGGCTC-CTTTTTATTTTTCACCTTGAATTATGACTTTCCTATAG-TTAAAAATTGCACCTTTAATTGGAGAACAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           257347 75 +    515838 GGGCTC-CTTTTTATTTTTCACCTTGAATTATGACTTTCCTTTAG-ATAAAAATTGCACCTTTAGTTGGAGAACAAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     886316 75 -   1771730 GGGCTC-CTTGTTATTTTTCACGTTGAATTATGACTTTCCTATAG-ATAAAAATTGCACCTTTAGTTGGAGAACAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      62279 75 -    486031 GGGTTC-ATTTTTATTTTTCACCTTGAATTATGACTTTCCTATAG-ATAAAAATTGTACCTTTAGTTGGAGAACAAT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     145282 69 -   1411461 GGGCTC--T-----TTCTTGACCTTGGGTTGTGACTTTCCTGTAG-ATAAAGATTGTACCTTTAATTGGAGCACCCT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           296018 69 +  18854210 GGGTTC--T-----TTCTTGACCTTGGGTTGTGACTTTCCTGTAG-ATAAAAATTGCACCTATAATTTGAGGACCCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26330707 59 +  26524999 gagccc-ca-----tgttgggtttaga-----gattct------g-aaaaaAACTTTGGCTTTGATCAGGGGGCCCT
i canFam3.chr35            I 335 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             8462 18 +     53444 I

a score=1033575.000000
s hg38.chr6_GL000254v2_alt  1468166 81 +   4827813 GGCCCAGGTGTCAGGT--ATAGGTG-AAAGT---CCAA------A---------GTTCTCTTCAGAAAAGAAACTCTATTT-----TAGTTATACAGAACATTTATT
s panTro5.chr6             30337643 81 + 175400573 GGCCCAGGTGTCAGGT--ATAGGTG-AAAGT---CCAA------A---------GTTCTCTTCAGAAAAGAAACTCTATTT-----TAGTTATACAGAACATTTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30571990 81 + 173848474 GGCCCAGGTGTCAGGT--ATAGGTG-AAAGT---CCAA------A---------GTTCTCTTCAGAAAAGAAACTCTATTT-----TAGTTATACAGAACATTTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     279030 81 +   2037526 GGCCCAGGTGTCAGGT--ATAGGTG-AAAGT---CCAA------A---------GTTCTCTTCAGAAAAGAAACTCTATTT-----TAGTTATACAGAACATTTATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74946077 82 + 122973662 GGCCCAGGTGTCAGGT--ATAGGTGAAAAGT---CCAA------A---------GTTCTCTTCAGAAAAGAAACTCTATTT-----TAGTTATACAGAACATTTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30824068 81 + 172585720 GGCTCAGGTGTCAGGT--ATAGGCG-AAAGT---CCAA------A---------GTTCTCTTCAGAAAAGAAACTCTATGT-----TAGTTATACAGAACATTTATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113542 81 - 170955103 GGCTCAGGTGTCAGGT--ATAGGCG-AAAGT---CCAA------A---------GTTCTCTTCAGAAAAGAAACTCTATGT-----TAGTTATACAGAACATCCATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     362448 81 +   1495729 GGCTCAGGTGTCAGGT--ATAGGCG-AAAGT---CCAA------A---------GTTCTCTTCAGAAAAGAAACTCTATGT-----TAGTTATACAGAACATCCATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     464545 81 -    863181 GGCTCAGGTGTCAGGT--ATAGGCG-AAAGT---CTAA------A---------GTTCTCTTCAGAAAAGAAACTCTATGT-----TAGTTATACAGAACATCCATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29614233 63 -  71996105 GGCTCA------------------G-AAAGT---CCAA------A---------GTTCTCTTCAGAAAAGAAACTC--TGT-----TAGTTATACAGAACATTTATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     323528 81 -    735854 GGCTCAGGTGTCAGGT--ATAGGCG-AAAGT---CCAA------A---------GTTCTCTTCAGAAAAGAAACTCTATGT-----TAGTTATACAGAACATCTATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251789 81 -   1829203 GGCTCAGGTGTCAGGT--ATAGGTG-AAAGT---CCAA------A---------GTTCTCTTCAGAAAAGAAACTCTATGT-----TAGTTATACAGAACATTTATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30445836 81 + 171630274 GGCCCAGATGTCAGGT--ACAAGTG-AAAGT---CCAA------A---------GTTCTCTTCAGAAAGGAAACTCTATTT-----TAGTTATACAGAACAGTTATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           257422 81 +    515838 GGCCCAGATGTAAGGT--ACAGGTG-AAAGT---TCAA------A---------GTTCTCTTCAGAAAAGAAACTCTATTT-----TAGTTATACAGAACATTTATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     886391 79 -   1771730 GGTCCAGATGTCAGGT--ACAGGTG-AAAGT---CCAA------A---------GTTCTCTTCAGAAAAGAAACTC--TTT-----TAGTTATACAGAACAGTCATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      62354 81 -    486031 GGCCCAGATGTCAGGT--ACAGGTG-AAAGT---CCAA------A---------GTTCTCTTCAGAAAAGAAACTCTATTT-----TAGTTATACAGAACAGTTAAT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     145351 81 -   1411461 GACCCAGGAGTCAGGT--ACAGGTG-AATAT---CCAA------G---------GTCCTCTTCAGAAAAGTAACTCCATTT-----TAGTTATACAGGAAGTTTATT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           296087 86 +  18854210 GACCCAAGTGTCAAGT--ACAGGTG-AATGC---CCAA------A---------GTTCTCCTCAGAAAACAAACTCTATTTTAGAATAGTTATAGAGGACATTTATC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26330766 91 +  26524999 GGTCCTGGACTCAAGTGAAAAGGTG-AATGT---CCAA------AGGCTTGGAGGTTCTCCCCAGGAAAGAAACTCTGTTC-----TAGTT-TATAGAACTTTTTTt
i canFam3.chr35            C 0 I 540
s dasNov3.JH567297             8480 83 +     53444 GACCCAAGTGTCACGT--GGAGAGG-GAAGTGCCCCAAGACTCGA---------GTTCTCCCCAGGAAAGAAACT--ATTT-----TAGTTACACAG-----CTATA
i dasNov3.JH567297         I 18 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I

a score=96834.000000
s hg38.chr6_GL000254v2_alt  1468247 11 +   4827813 CAAATCTTCCA
s panTro5.chr6             30337724 11 + 175400573 CAAATCTTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30572071 11 + 173848474 CAAATCTTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     279111 11 +   2037526 CAAATCTTCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74946159 11 + 122973662 CAAATCTTCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30824149 11 + 172585720 CAAATCTTCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113623 11 - 170955103 CAAATCTTCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     362529 11 +   1495729 CAAATCTTCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     464626 11 -    863181 CAAATCTTCCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29614296 11 -  71996105 CAAATCTTCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     323609 11 -    735854 CAAATCTTCCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251870 11 -   1829203 CAAATCTTCCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30445917  8 + 171630274 CAGATCTT---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           257503  8 +    515838 CAAATCTT---
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     886470  8 -   1771730 CAGATCTT---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      62435  8 -    486031 CAGATCTT---
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     145432 11 -   1411461 CAAACTTTCCA
i proCoq1.NW_012149775v1   C 0 I 26
s otoGar3.GL873550           296173 11 +  18854210 CAAATTTTCCA
i otoGar3.GL873550         C 0 I 1
s dasNov3.JH567297             8563 11 +     53444 CGCATTTTTCA
i dasNov3.JH567297         C 0 I 2
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e canFam3.chr35            26330857 540 +  26524999 I

a score=202306.000000
s hg38.chr6_GL000254v2_alt  1468258 22 +   4827813 CTATTTAATTTATGTAAAATAT
s panTro5.chr6             30337735 22 + 175400573 CTATTTAATTTATGTAAAATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30572082 22 + 173848474 CTATTTAATTTATGTAAAATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     279122 17 +   2037526 CT-----ATTTATGTAAAATAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74946170 17 + 122973662 CT-----ATTTATGTAAAATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30824160 17 + 172585720 CT-----ATTTATGTAAAATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113634 22 - 170955103 CTATTTAATTTATGTAAAATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     362540 22 +   1495729 CTATTTAATTTATGTAAAATAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     464637 22 -    863181 CTATTTAATTTATGTAAAATAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29614307 22 -  71996105 CTATTTAATTTATGTAAAATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     323620 22 -    735854 CTATTTAATTTATGTAAAATAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251881 22 -   1829203 CTATTTAATTTATGTAAAATAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30445925 22 + 171630274 CTATTTAATTCATGTAGAATAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           257511 22 +    515838 CTATTTAATTCATGCAAAATAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     886478 22 -   1771730 CTATTTAATTCATGTAAAATAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      62443 22 -    486031 CTATTTAATTCATGTAAAATAT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           296185 22 +  18854210 CTTTTCTAATTCTGGAAAATTC
i otoGar3.GL873550         I 1 C 0
s dasNov3.JH567297             8576 22 +     53444 TAATTTGGCTCAGGTAAGCTGT
i dasNov3.JH567297         I 2 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     145443 26 -   1411461 I
e canFam3.chr35            26330857 540 +  26524999 I

a score=31842.000000
s hg38.chr6_GL000254v2_alt  1468280 2 +   4827813 CC
s panTro5.chr6             30337757 2 + 175400573 CC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30572104 2 + 173848474 CC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     279139 2 +   2037526 CC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74946187 2 + 122973662 CC
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             30824177 2 + 172585720 CC
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             30113656 2 - 170955103 CC
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     362562 2 +   1495729 CC
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     464659 2 -    863181 CC
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29614329 2 -  71996105 CC
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1     323642 2 -    735854 CC
i manLeu1.NW_012107142v1   C 0 I 1
s colAng1.NW_012115577v1     251903 2 -   1829203 CC
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30445947 2 + 171630274 CC
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           257533 2 +    515838 CC
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     886500 2 -   1771730 CC
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496901v1      62465 2 -    486031 CC
i aotNan1.NW_018496901v1   C 0 I 1
s otoGar3.GL873550           296207 2 +  18854210 CC
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26331397 2 +  26524999 CT
i canFam3.chr35            I 540 C 0
s dasNov3.JH567297             8598 2 +     53444 CC
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     145443 26 -   1411461 I

a score=392790.000000
s hg38.chr6_GL000254v2_alt  1468282 44 +   4827813 -TAGTCAATG-TTTTTAACC-C--G--AGTGTTTTTAAACATTG-------------C-TTTTTA
s panTro5.chr6             30337759 44 + 175400573 -TAGTCAATG-TTTTTAACC-C--G--AGTGTTTTTAAACATTT-------------C-TTTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30572106 44 + 173848474 -TAGTCAATG-TTTTTAACC-C--G--AGTGTTTTTAAACATTT-------------C-TTTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     279141 44 +   2037526 -TAGTCAATG-TTTTTAACT-C--G--AGTGTTTTTAAACATTG-------------C-TTTTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74946190 46 + 122973662 -TAGTCAACG-TTTTTAACC-C--AACAGTGTTTTTAAAAATTG-------------C-TTTTTA
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30824180 41 + 172585720 -TAGTCAATG-TTTTTAACC-C--G--AGTGTTTTTAAAAATTG-------------G-TTT---
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30113659 46 - 170955103 -TAGTCAATG-TTTTTAACC-CAAG--AGTGTTTTTAAAAATTG-------------G-TTTTTA
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     362565 46 +   1495729 -TAGTCAATG-TTTTTAACC-CAAG--AGTGTTTTTAAAAATTG-------------G-TTTTTA
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     464662 44 -    863181 -TAGTCAATG-TTTTTAACC-C--G--AGTGTTTTTAAAAATTG-------------G-TTTTTT
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29614332 54 -  71996105 -TAGTCAATG-TTTTTAACC-C--A--AGTGTTTTTACAAAttgtttttttttttttt-ttt---
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1     323645 41 -    735854 -TAGTCAATG-TTTTTAACC-C--G--AGTGTTTTTAAAAATTG-------------G-TTT---
i manLeu1.NW_012107142v1   I 1 C 0
s colAng1.NW_012115577v1     251906 39 -   1829203 -TAGTCAATG-TTTTTAACC-C--G--AGTGTTTTTAAAATT---------------G-TTT---
i colAng1.NW_012115577v1   I 1 C 0
s calJac3.chr4             30445950 38 + 171630274 -------ATG-TTTTTAACC-C--A--AGTATTTTTTAAAACTG-------------C-TTTTTA
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           257536 45 +    515838 -TAGTCAATG-TTTTTAACC-C--A--AGTATTTTTAAAAACTG-------------CTTTTTTA
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     886503 45 -   1771730 -TAGTCAATG-TTTTTACCTAA--A--AGAATTTTTAAAAATTG-------------C-TTTTCA
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496901v1      62468 45 -    486031 -TAGTCAATG-TTTTTACCCAA--A--AGTATTTTTAAAAATTG-------------C-TTTTTA
i aotNan1.NW_018496901v1   I 1 C 0
s proCoq1.NW_012149775v1     145469 47 -   1411461 -TAGTCGATGTTTTTTAACC-CAAG--AGTGTTTTTGAAAATTA-------------C-TTTTTA
i proCoq1.NW_012149775v1   I 26 I 22
s otoGar3.GL873550           296210 46 +  18854210 -TGCTTAATG-TTTTTAAAC-CAAG--AGTGTTTTTAAATTTTT-------------G-TTTTTG
i otoGar3.GL873550         I 1 I 9
s canFam3.chr35            26331399 39 +  26524999 -TAGTCAT---TTTTTAAAC-C--T--GGTG---TCAAATCTTA-------------C-ATTTTA
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297             8600 45 +     53444 TTAGTATATT-TTTTTAACC-C--A--AGAGTTTTAAAAAACTA-------------C-CTTTTA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I

a score=-65280.000000
s hg38.chr6_GL000254v2_alt  1468326 12 +   4827813 -----------------AAAAAT-----AAAAAA
s panTro5.chr6             30337803 12 + 175400573 -----------------AAAAAT-----AAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30572150 11 + 173848474 -----------------AAAAAT------AAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     279185 12 +   2037526 -----------------AAAAAT-----AAAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74946236 12 + 122973662 -----------------AAGAAT-----AAAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30824221  8 + 172585720 ------------------AAAAA-----AAA---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113705 12 - 170955103 -----------------AAAAAA-----AAATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     362611 12 +   1495729 -----------------AAAAAA-----AAAATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     464706 12 -    863181 -----------------TTAAAA-----AAAATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29614386  2 -  71996105 ------------------aa--------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     323686 11 -    735854 ------------------AAAAA-----AAAATG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     251945  9 -   1829203 ------------------AAAAA-----AAAA--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30445988 17 + 171630274 -----------------AAAAAAGACAAAACAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           257581 17 +    515838 -----------------AAAAAAGACAAAACAGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     886548 17 -   1771730 -----------------AAAAAAGACAAAACAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      62513 17 -    486031 -----------------AAAAAATACAGAACAAT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           296265  6 +  18854210 -----------------AAATAT-----------
i otoGar3.GL873550         I 9 C 0
s canFam3.chr35            26331438  2 +  26524999 --------------------------------TT
i canFam3.chr35            C 0 I 2
s dasNov3.JH567297             8645 23 +     53444 TGCTGTTTTGCTTTCCCACCAAT-----------
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     145516 22 -   1411461 I

a score=2148219.000000
s hg38.chr6_GL000254v2_alt  1468338 183 +   4827813 -----CTTTTAAAATATTGAACCATTTACGGGGGCTTTAAAAACAGACAGCTTTTGTTCCAAATGAGGATGCCTCTCCTTCCGTTTGTCTGACCTACCCTTTG-----CCCCCATGGTCCCCTACTCCATTTATTAGCTCCACAGAGACCTGACAGAACCTT-AAAGTTGATCCCTGAGTCAGACT---GGGCCTGT
s panTro5.chr6             30337815 183 + 175400573 -----CTTTTAAAATATTGAACCATTTACGGGGGCTTTAAAAACAGACAGCTTTTGTTCCAAATGAGGATGCCTCTCCTTCCATTTGTCTGACCTACCCTTTG-----CCCCCATGGTCCCCTACTCCATTTATTAGCTCCACAGAGACCTGACAGAACCTT-AAAGTTGATCCCTGAGTCAGACT---GGGCCTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30572161 183 + 173848474 -----CTTTTAAAATATTGAACCATTTACGGGGGCTTTAAAAACAGACAGCTTTTGTTCCAAATGAGGATGCCTCTCCTTCCATTTGTCTGACCTACCCTTTG-----CCCCCATGGTCCCCTACTCCATTTATTAGCTCCACAGAGACCTGACAGAACCTT-AAAGTTGATCCCTGAGTCAGACT---GGGCCTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     279197 182 +   2037526 -----CTTTTAAAATATTGAACCATTTACGGGGGCTTTAAAAACAGACAGCTTTTGTTCCAAATGAGGATGCCTCTCCTTCCATTTGTCTGACCTACCCTTTG------CCCCATGGTCCCCTACTCCATTTATTAGCTCCACAGAGACCTGACAGAACCTT-AAAGTTGATCCCTGAGTCAGACT---GGGCCTGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74946248 183 + 122973662 -----CTTTTAAAATATTGAACCATTTAAGGGGGCTTTAAAAACAGACAGCTTTTGTTCTAAATGAGGATGCCTCTCCTTCCATTTGTCTGAGCTACCCTTTG-----CCCCCATGACCCCCTACTCCGTTTATTAGCTCCACAGAGACCTGACAGCACCTT-AAAGTTGATCCCTGAGTCAGACT---GGTCCTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30824229 180 + 172585720 -------TTTTAAATATTGAACCATTTACGGGGTCTTTAAAAACAGACAGCTTTTGTTCCAAACGAGGATGCCTCTCCTTCCATTTGTCTGA-CTACCCTTTG-----CCCCCATGGTCCCCTGCTCCATTCATTAGCTCCACAGAGACCTGACAGCACCTT-AAAGTGGATTCCTGAGTCAGACT---GGTCCTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113717 182 - 170955103 -----TTTTTTAAATATTGAACCATTTACGGGGTCTTTAAAAACAGACAGCTTTTGTTCCAAACGAGGATGCCTCTCCTTCCATTTGTCTGA-CTACCCTTTG-----CCCCCATGGTCCCCTGCTCCATTCGTTAGCTCCACAGAGACCTGACAGCACCTT-AAAGTGGATTCCTGAGTCAGACT---GGTCCTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     362623 182 +   1495729 -----TTTTTTAAATATTGAACCATTTACGGGGTCTTTAAAAACAGACAGCTTTTGTTCCAAACGAGGATGCCTCTCCTTCCATTTGTCTGA-CTACCCTTTG-----CCCCCATGGTCCCCTGCTCCATTCGTTAGCTCCACAGAGACCTGACAGCACCTT-AAAGTGGATCCCTGAGTCAGACT---GGTCCTGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     464718 182 -    863181 -----TTTTTTAAATATTGAACCATTTACGGGGTCTTTAAAAACAGACAGCTTTTGTTCCAAATGAAGATGCCTCTCCTTCCATTTGTCTGA-CTACCCTTTG-----CCCCCATGGTCCCCTGCTCCATTCATTAGCTCCACAGAGACCTGACAGCACCTT-AAAGTGGATCCCTGAGTCAGACT---GGTCCTGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29614388 181 -  71996105 ------tttttAAATATTGAACCATTTACAGGGGCTTTAAAAACAGACAGCTTTTGTTCCAAATGAAGATGCCTCTCCTTCCATTTGTCTGA-CTACCCTTTG-----CCTCTATGGTCCCCTACTCCATTCGTTAGCTCCACAGAGACCTGACAGCACCTT-AAAGTGGATCCCTGAGTCAGACT---GGTCCTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     323697 182 -    735854 -----TTTTTTAAATATTGAACCATTTACGGGGTCTTTAAAAACAGACAGCTTTTGTTCCAAATGAGGATGCCTCTCCTTCCATTTGTCTGA-CTACCCTTTG-----CCCCCATGGTCCCCTACTCCATTCATTAGCTCCACAGAGACCTGACAGCACCTT-AAAGTGGATCCCTGAGTCAGACT---GGTCCTGT
i manLeu1.NW_012107142v1   C 0 I 732
s colAng1.NW_012115577v1     251954 180 -   1829203 -------GTTTAAATATTGAACCATTTACGGGGTCTTTAAAAACAGATAGCTTTCGTTCCAAATGAAGATGCCTCTCCTTCCATTTGTCTGA-CTACCCTTTG-----TCCCCATGGTCCCCTACTCCATTCATTAGCTCCACAGAGACCTGACAGCACCTT-AAAGTTGATCCCTGAGTCAAACT---GGTCCTGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30446005 179 + 171630274 -----CTTTTAAAACATTGAACAATTTATGGGGGCTTTAAAAAC----AGCTTTTGTCCCAAATGAGGATGCCTCTCCTTCCATTCGTCTGATTTACCCTTTG-----CCCTCATGGTCCCCTACTCCACTGATTAGCTCCACAGAGACTTGAAAGCACCTT-AAAGTCAATCCCTGAGTAAGGCT---GGTCCTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           257598 176 +    515838 -----CTTTTAAAACATTGAACAATTTATGGGAGCTTTAAAAAC----AGCTTTTGTTCCAAACGAGGATGCCTCTCCTTCCATTTGTTTGACCTACCCTTTG-----CCCCCA---TCTCCTACTCCATTGATTAGCTCCACAGAGACCTGACAGCACCTT-AAAGTCGATCCCTGAGTAAGGCT---GGTCCTGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     886565 179 -   1771730 -----CTTTTAAAATTTTGAACAATTTATGGGGGCTTTAAAAAC----AGCTTTTGTCCCAAACGAGGATGCCTCTCCTTCCATTTGTCTGACCTACCCTTTG-----CCCCCATGGTCCCCTACTCCATTTATTAGCTCCACAGAGACCTGACAGCACCTT-AAAGTCAGTCCCTGAGTAAGGCT---GGTCCTGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      62530 179 -    486031 -----CTGTTAAAATATTGAACAATTTATGGGGGCTTTAAAAAC----AGCTTTTGTCCCAAATGAGGATGCCTCTCCTTCCATTTGTCTGACCTACCCTTTG-----CCCCCATGGTCCCCTACTCCATTTATTAGCTCCACAGAGACCTGACAGCACCTT-AAAGTCAATCCCTGAGTAAGGCT---GGTCCTGT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     145538 180 -   1411461 -----CTTTTAAAATATGGAACAATTTATGGAGGCTTT-AAAATGGACAGCTTTTGTTCCAAATGAGGATACCTCTCCATCCA----TATGACCTACTCTTTG-----CTCCCATGG-CCCCTACCCTGCTCATTAGCCCCACAGAGACCTTACAGCACCTT-AAAGCCGATCCCCGAGTCAGACTCACAGTCCTGT
i proCoq1.NW_012149775v1   I 22 C 0
s otoGar3.GL873550           296271 180 +  18854210 -----CTTTTAAAATAATGAACAATTTAAGGAGGCTTTAAAAATGGGCAGCTTTTGTTCCAAAT---GATACCTCTCCATCCATTTGTCTGACCTATTC--TG-----CTCCCATGGTCCCTTACCCCATTCTTTAGCTC--CAGAGCCCTGACAGCAACTTAAAAGCTGATCCCCGAGTCAGACTTGCAGTCCTGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26331442 166 +  26524999 -------TTTCAGGTATTGGATAATTCCAGGAGG-----AAGCTGGACAGCTTCTGTTCCAGACAAGAATGCAT----TGCTGTTTGTCTGCCTCCCTCCTTGCCCCCCCCCCATGGTCCCTTAC-CTGTTCTTTAGCTCCACAGGGACCAAAGGGCATCTT-CCTGCTGATT-CTGACTTATGT------------
i canFam3.chr35            I 2 C 0
s dasNov3.JH567297             8668 130 +     53444 CTTTTCCTTTTAAATGATGAACAATTTAAGGGGGCTTTAAAAGTGGGCAGCTTTTGTCCC----------------------------CCGA------CCCTG---------------------------TCATCAGCGCCAC--GGTCCCAAGAGCCCCTG-AAGGCTGGGCTCACCGTCCCACC---ACGACAGT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I

a score=1985402.000000
s hg38.chr6_GL000254v2_alt  1468521 167 +   4827813 CTCAAGGTCAGCTCACATCTGAAATCAAGCCTCTGCTGAGTCTGTGGAGTAAAAGGCTGATA------------------------------------------CTCCCTTCTCTCCTGCAAGACAGCTGTGTGCTCTGGCCCAGAGTGGGCACAGAA---CTGCTG-GGCCCAGGCTGTCAGAAACTTCTGGGCTGGCATCCAGCTGCTCCA
s panTro5.chr6             30337998 167 + 175400573 CTCAAGGTCAGCTCACATCTGAAATCAAGCCTCTGCTGAGTCTGTGGAGTAAAAGGCTGATA------------------------------------------CTCCCTTCTCTCCTGCAAGACAGCAGTGTGCTCTGGCCCAGAGTGGGCACAGAA---CTGCTG-GACCCAGGCTGTCAGAAACTTCTGGGCTGGCATCCAGCTGCTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30572344 167 + 173848474 CTCAAGGTCAGCTCACATCTGAAATCAAGCCTCTGCTGAGTCTGTGGAGTAAAAGGCTGATA------------------------------------------CTCCCTTCTCTCCTGCAAGACAGCAGTGTGCTCTGGCCCAGAGTGGGCACAGAA---CTGCTG-GGCCCAGGCTGTCAGAAACTTCTGGGCTGGCATCCAGCTGCTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     279379 167 +   2037526 CTCAAGGTCAGCTCACATCTGAAATCAAGCCTCTGCTGAGTCTGTGGAGTAAAAGGCTGATA------------------------------------------CTCCCTTCTCTCCTGCAAGACAGCAGTGTGCTCTGGCCCACAGGGGGCACAGAA---CTGCTG-GACCCAGGCTGTCAGAAACTTCTGGGCTGGCATCCAGCTGCTCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74946431 167 + 122973662 CTCAAGGTCAGCTCACATCTGAAATCAAGCCTCTGCTGAGTCTGTGGAGTAGAACGCTGATG------------------------------------------CTCCCTTCTCTCCTGCAAGACAGCAGTGTGCTCTGGCCCACAGTGGGTGCAGAA---CTGCTG-GGCCCAGGCTGCCggaaacttctgggctggcatccagatgctcca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30824409 166 + 172585720 CTCAAGGTCAGCTCACATCTGAAGTCAAGCCTCTGCTGAGTCTGTGGAGTAG-AGGCTGATA------------------------------------------CTCCCTTCTCTCCTGCAAGACAGCAGTGTGCTCTGGCCCAGCGTGGGCAAAGAA---CTGCTG-GGCCCAGCCTTCCAGAAACTCCTGGGCTGGTGTCCAGCTGCTCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30113899 166 - 170955103 CTCAAGGTCAGCTCACATCTGAAGTCAAGCCTCTGCTGAGTCTGTGGAGTAG-AGGCTGATA------------------------------------------CTCCCTTCTCTCCTGCAAGACAGCGGTGTGCTCTGGCCCAGCGTGGGCACAGAA---CTGCTG-GGCCCAGCCTTCCAGAAACTCCTGGGCTGGCATCCAGCTGCTCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     362805 166 +   1495729 CTCAAGGTCAGCTCACATCTGAAGTCAAGCCTCTGCTGAGTCTGTGGAGTAG-AGGCTGATA------------------------------------------CTCCCTTCTCTCCTGCAAGACAGCGGTGTGCTCTGGCCCAGCGTGGGCACAGAA---CTGCTG-GGCCCAGCCTTCCAGAAACTCCTGGGCTGGCGTCCAGCTGCTCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     464900 166 -    863181 CTCAAGGTCAGCTCACATCTGAAGTCAAGCGTCTGCTGAGTCTGTGGAGTAG-AGGCTGATA------------------------------------------CTCCCTTCTCTCCTGCAAGACAGCGGTGTGCTCTGGCCCAGCGTGGGCACAGAA---CTGCTG-GGCCCAGCCTTCCAGAAACTCCTGGGCTGGCGTCCAGCTGCTCCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29614569 166 -  71996105 CTCAAGGTCAGCTCACATCTGAAGTCAAGCCTCTGCTGAGTCTGTGGAGTAG-AGGCTGATA------------------------------------------CTCCCTTCTCTCCTGCAAGACAGCGGTGTGCTCTGGCCCAGCGTGGGCACAGAA---CTGCTG-GGCCCAGCCTTCCAGAAACTCCTGGGCTGGCGTCCAGCTGCTCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     324611 166 -    735854 CTCAAGGTCAGCTCACATCTGAAGTCAAGCGTCTGCTGAGTCTGTGGAGTAG-AGGCTGATA------------------------------------------CTCCCTTCTCTCCTGCAAGACAGCGGTGTGCTCTGGCCCAGCGTGGGCACAGAA---CTGCTG-GGCCCAGCCTTCCAGAAACTCCTGGGCTGGCGTCCAGCTGCTCCA
i manLeu1.NW_012107142v1   I 732 C 0
s colAng1.NW_012115577v1     252134 167 -   1829203 CTCAAGGTCAGTTCACATCTGAAATCAAGCCTCTGCTGAGTCTGTGGAGTAGAAGGCTGATA------------------------------------------CTCCCTTCTCTCCTGCAAGACAGCAGTGTGCTCTGGCCCAGAGTGGGCACCGAA---CTGCTG-GGCCCAGCCTTCCAGAAACTCCCGGGCTGGCGTCCAGCTGCTCCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30446184 167 + 171630274 CACAAGGTCAGCTCACATCTGAGATCAAGCCTCTGCTGTGTCTGTGGAGTAGAAGGCTGATA------------------------------------------CTCCCTTCTCTCCTGCAAGACAGCTGTGTGCTCTGGCCCAGAGTGGGCACAGAA---CTGTTG-GGCCCAGGCTGCCAGAAACTCCTGGGCTGACATCCAGCTATTCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           257774 166 +    515838 CACAAGGTCAGCTCACATCTGAAATCAAGCCTCTGCTGCATCTGTGGAGTAGAAGACTAATA------------------------------------------CTCCCTTCTCTCCTGCAGGACAGCTGTGTGCTCTGGCCCAGAGTGGGCACAGAA---CTGTTG-GGCCCAGGCTGCCAGAAACT-CTGGGCTGACATCCAGCTACTCAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     886744 158 -   1771730 CACAAGGTCAGCTCACATCTGAAATAGAGCCTCTGCTGTATCTGTGGAGTAGAAGGCTAATA------------------------------------------CTCCCTTCTCTCCTGCAAGACA------TGCTCTGGCCCAGAGTGGGCAGAGAA---C---TG-GGCCCCGGCTGCCAGAAACTCCTGGGCTGATATCCAGCTACTCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      62709 167 -    486031 CACAAGGTCAGCTCACATCTGAAATCAAGCCTCTGCTGCATCTGTGGAGTAGAAGGCTAATA------------------------------------------CTCCCTTCTCTCCTGCAAGACAGCTGTGTGCTCTGGCCCAGAGTGGGCACAGAA---CTGTTG-GGCCCTGGCTGCCAGAAACTCCTGGGCTGATATCCAGCTACTCCA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     145718 169 -   1411461 CACAAGGTCAGCTCAG-TCCGAAATGAAGCTTCTGCTGAGCCCGCAGGGTGCAAGGCTGATA------------------------------------------CCCCCCTGTCTCCTGCAAGACAGCAACGTGCTCTGGCCTAGAGCGGGCACAGATGAGCTGCTG-GGCCCAGGCTGCCGGGAACTCACGGGCTGACATCCAGCCACTCCA
i proCoq1.NW_012149775v1   C 0 I 174
s otoGar3.GL873550           296451 167 +  18854210 CACAAGATCACTCATC-TCTGAAATCAAGCTTCTGCTGAGTCTGCAGGATGGGAGACTGACA------------------------------------------CTCCCTTCTCCCCTGCAAGACAGCAATGTGCTCTAGTCCAGAGCAGG--CAGAAGAGCTGCTG-GGCCCAGGCTGCCAGAAACTCATGGGCTGACAGCCAACCACTCTA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26331608 141 +  26524999 -TCATGGTC--------------------CCTGTCACAGATCTGCAGTGGGCAAGGTGGGCA------------------------------------------CCCCACCCTGTTTCCCGAGACAGCCCTGAGCTCTGGCT--GGGGAGGCACCAGA---CAGCTGCTGCACCTGCCTCCAGAAACCC---AGTTCACATCCAGCATCGTA-
i canFam3.chr35            C 0 I 11
s dasNov3.JH567297             8798 189 +     53444 -----GCCCAGCTCACGTCTGGAATCAG----CTTCTAAGTGCGCAGGGGGG-CAGCTGATGGGtccctccctcccctcaaccctcccctcctccctcccttccctcccctctctccttcATGACAGCAACATGCTC-GGCC--AAGTCGGCACAGGAGCACAGCTG-GGC-------TGCAGGAATTC--GCGACGGCCCCCGGCACCGCA-
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I

a score=1062044.000000
s hg38.chr6_GL000254v2_alt  1468688 101 +   4827813 ATGCACAAAGCCAGCTAACGCAGGCCAACCATGCCA--GTGAGTCCACATTACAGAAGGACGGGAAGCAGTGGGATGCGGTACCCAGG-GGTAGCAGTCTAA-TC
s panTro5.chr6             30338165 101 + 175400573 ATGCACAAAGCCAGCTAACGCAGGCCAACCATGCCA--GTGAGTCCACATTACAGAAGGATGGGAAGCAGTGGGATGCGGTACCCAGG-GGTAGCAGTCTAA-TC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30572511 101 + 173848474 ATGCACAAAGCCAGCTAACGCAGGCCAACCATGCCA--GTGAGTCCACATTACAGAAGGACGGGAAGCAGTGGGATGCGGTACCCAGG-GGTAGCAGTCTAA-TC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     279546 100 +   2037526 ATGCACAAAGCCAGCTAACGCAGGCCAACCATGCCA--GTGAGTCCACATTACAGAAGGACGGGAAGCAGTGGGATGCGGTA-CCAGG-GGTAGCAGTCTAA-TC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74946598 101 + 122973662 atgcacaaagctggctaacgtgggccaaccatgcca--gtgagtccacattacagatggacgggaagcagtgggattcagtacccagg-ggtagcagtctaa-tc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30824575 101 + 172585720 ATGCACAAAGCCAGCTAACGCTGGCCAACCATGCCA--GTGAGTCCACATTGCAGATGGACGGGAAGCAGTGGGATGCAGTACCCAGG-GGCAGCAATCTAA-TC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30114065 101 - 170955103 ATGCACAAAGCCAGCTAACGCGGGCCAACCATGCCA--GTGAGTCCACATTGCAGATGGACGGGAAGCAGTGGGATGCAGTACCCAGG-GGCAGCAATCTAA-TC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     362971 101 +   1495729 CTGCACAAAGCCAGCTAACGCGGGCCAACCATGCCA--GTGAGTCCACATTGCAGATGGACGGGAAGCAGTGGGATGCAGTACCCAGG-GGCAGCAATCTAA-TC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     465066 101 -    863181 ATGCACAAAGCCAGCTACCGCGGGCCAACCATGCCA--GTGAGTCCACATTGCAGATGGACGGGAAGCAGTGGGATGCAGTACCCAGG-GGCAGCAATCTAA-TC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29614735 101 -  71996105 ATGCACAAAGCCAGCTAACACGGGCCAACCATGCCA--GTGAGTCCACATTACAGATGGACGGGAAGCAGTGGGATGCAGTACCCAGG-GGCAGCAATCTAA-TC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     324777 101 -    735854 ATGCACAAAGCCAGCTACCGCGGGCCAACCATGCCA--GTGAGTCCACATTGCAGATGGACGGGAAGCAGTGGGATGCAGTACCCAGG-GGCAGCAATCTAA-TC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     252301 101 -   1829203 ATGCACAAAGCCAGCTAACGCGGGCCAACCATGCCA--GTGAGTCCACATTGCAGATGGACGGGAAGCAGTGGGATGCAGTACCCAGG-GGTAGCAATCTAA-TC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30446351 100 + 171630274 ATGCACAAAGCCAGCTAACGTGGGCCAACCATGCCA--ATGAGTCCA-ATTACAGATGGATGGGAAGCAGTGGGACGCGGCACCCAGG-AGTAGCAGTCTCA-TC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           257940 100 +    515838 ATGCACAAAGCCAGCTAATGGGGGCAAACCATGCTA--ATGAGTCCA-ATTACAGATGGATGGGAAGCAGTGGGACACGGCACCCAGG-AGTAACAGTCTAA-TC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     886902 100 -   1771730 ATGCCCAAAGCCAGCTAATGCCGGCCAACCATGCCA--ATGAGTCCA-ATTACAGATGGATGGGAAGCAGTGGGATGAGGCACCCAGG-AGTAGCAGTCTAA-TC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      62876 100 -    486031 ATGCCCAAAGTCAGCTAACGCGGGCCAACCATGCTG--ATGAGTCCA-ATTACAGATGGATGGGAAGCAGTGGGACGAGGCACCCAGG-AGTAGCAGTCTAA-TC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           296618 100 +  18854210 ATGCACAAAACTGGC-AGCAGTAGCGAACCATCCCA--GCGAGCCCATGTTATAGATGGAC-AGCGGCAGTGGGCCATGGCACCCAGG-GGCAGAAGTCTAATTC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26331760  94 +  26524999 ATGCCCAAAAC---CTAAGCCTGG--AGGGATGCCACCCTGAGTCCACGGTACAGATGG---GGACACAGGAGGATGT--CACGCATGCAGTGGCAGTGCAA-GC
i canFam3.chr35            I 11 C 0
s dasNov3.JH567297             8987  76 +     53444 GTGCAC-AGGCCCTCTAA----GGGCGCCCGCCCCA--GT-------------------CTCGGAGGCCGTGGG-TGCTGCACCAGAG-GCTGCCGGTGTGG-AC
i dasNov3.JH567297         C 0 I 31
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     145887 174 -   1411461 I

a score=351578.000000
s hg38.chr6_GL000254v2_alt  1468789 32 +   4827813 CCTCCCAAAGCCAAATTCTAGAAAAATTTTCC
s panTro5.chr6             30338266 32 + 175400573 CCTCCCAAAGCCAAATTCTAGAAaaattttcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30572612 32 + 173848474 CCTCCCAAAGCCAAATTCTAGAAAAATTTTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     279646 32 +   2037526 CCTCCCAAAGCCAAATTCTAGAAaaattttcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74946699 32 + 122973662 cctcccaaagccaaattctagaaaaATTTTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30824676 32 + 172585720 CCTCCCAAAGCCAAATTCTAGAAAAATTTTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30114166 32 - 170955103 CCTCCCAAAGCCAAATTCTAGAAAAATTTTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     363072 32 +   1495729 CCTCCCAAAGCCAAATTCTAGAAAAATTTTCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     465167 32 -    863181 CCTCCCAAAGCCAAATTCTAGAAAAATTTTCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29614836 32 -  71996105 CCTCCCAAAGCCAAATTCTAGAAAAATTTTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     324878 32 -    735854 CCTCCCAAAGCCAAATTCTAGAAAAATTTTCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     252402 32 -   1829203 CCTCCCAAAGTCAAATTCTAGAAAAATTTTCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30446451 32 + 171630274 CCTCCCAAAGCCAAATTCTGGAAAAGAATTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           258040 32 +    515838 CCTCCCAAAGCCAAATTCTAGAAAAAATTTCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     887002 32 -   1771730 CCTCCCAAAGCCAAATTCTAGAAAAAAAATTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      62976 32 -    486031 CCTCCCAAAGCCAAATTCTAGAAAAAATTTTC
i aotNan1.NW_018496901v1   C 0 I 17
s otoGar3.GL873550           296718 32 +  18854210 CCTTCTGGAACCAAATTCTAGAAAAAATTTCC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26331854 12 +  26524999 ACCACCATTACC--------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             9063 31 +     53444 I
e proCoq1.NW_012149775v1     145887 174 -   1411461 I

a score=6559.000000
s hg38.chr6_GL000254v2_alt  1468821 1 +   4827813 A
s panTro5.chr6             30338298 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30572644 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     279678 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30824708 1 + 172585720 A
i rheMac8.chr4             C 0 I 16
s macFas5.chr4             30114198 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     363104 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 I 16
s cerAty1.NW_012002535v1     465199 1 -    863181 A
i cerAty1.NW_012002535v1   C 0 I 16
s chlSab2.chr17            29614868 1 -  71996105 A
i chlSab2.chr17            C 0 I 16
s manLeu1.NW_012107142v1     324910 1 -    735854 A
i manLeu1.NW_012107142v1   C 0 I 16
s colAng1.NW_012115577v1     252434 1 -   1829203 A
i colAng1.NW_012115577v1   C 0 I 16
s calJac3.chr4             30446483 1 + 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           258072 1 +    515838 A
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     887034 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 I 17
s otoGar3.GL873550           296750 1 +  18854210 A
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             9063 31 +     53444 I
e proCoq1.NW_012149775v1     145887 174 -   1411461 I
e canFam3.chr35            26331866 0 +  26524999 C
e aotNan1.NW_018496901v1      63008 17 -    486031 I
e nomLeu3.chr1a            74946731 0 + 122973662 C

a score=-2061.000000
s hg38.chr6_GL000254v2_alt  1468822 46 +   4827813 AATTTAAAAAATGGAAAAGG-------GAAAAATGGAAAATGGAAAAAATTTT
s panTro5.chr6             30338299 31 + 175400573 aattta----------------------aaaaatggaaaatggaaaaaatttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30572645 31 + 173848474 AATTTA----------------------AAAAATGGAAAATGGAAAAAATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     279679 53 +   2037526 aatttaaaaaatggaaaagggaaaaatggaaaatggaaaatggaaaaaatttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74946731 17 + 122973662 -ACTTA-------------------------------AGATTGTGAAAA----
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30114199 16 - 170955103 --CTTG-------------------------------AGATTGTGAAAA----
i macFas5.chr4             C 0 C 0
s otoGar3.GL873550           296751 14 +  18854210 --CTTA-------------------------------AAACTGTGAA------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26331866 15 +  26524999 --TTTA-------------------------------GGACTGAGAGA-----
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             9063 31 +     53444 I
e proCoq1.NW_012149775v1     145887 174 -   1411461 I
e saiBol1.JH378341           258073  0 +    515838 C
e aotNan1.NW_018496901v1      63008 17 -    486031 I
e cebCap1.NW_016107755v1     887035 17 -   1771730 I
e calJac3.chr4             30446484  0 + 171630274 C
e colAng1.NW_012115577v1     252435 16 -   1829203 I
e manLeu1.NW_012107142v1     324911 16 -    735854 I
e chlSab2.chr17            29614869 16 -  71996105 I
e cerAty1.NW_012002535v1     465200 16 -    863181 I
e macNem1.NW_012012100v1     363105 16 +   1495729 I
e rheMac8.chr4             30824709 16 + 172585720 I

a score=272.000000
s hg38.chr6_GL000254v2_alt  1468868 29 +   4827813 AAATTTAATTTTCCAAATTTAAAAAATGG
s panTro5.chr6             30338330 29 + 175400573 aaatttaattttccaaatttaaaaAATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30572676 29 + 173848474 TAATTTAATTTTCCAAATTTAAAAAATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     279732 29 +   2037526 aaatttaattttccaaatttaaaaAATGG
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30446484 16 + 171630274 ---------CTTCAGACTGTGAAAA----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           258073 16 +    515838 ---------CTTAAGACTGTGAAAA----
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           296765  2 +  18854210 --------------------GA-------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26331881  1 +  26524999 ----------------------------G
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             9063 31 +     53444 I
e proCoq1.NW_012149775v1     145887 174 -   1411461 I
e aotNan1.NW_018496901v1      63008 17 -    486031 I
e cebCap1.NW_016107755v1     887035 17 -   1771730 I
e colAng1.NW_012115577v1     252435 16 -   1829203 I
e manLeu1.NW_012107142v1     324911 16 -    735854 I
e chlSab2.chr17            29614869 16 -  71996105 I
e cerAty1.NW_012002535v1     465200 16 -    863181 I
e macNem1.NW_012012100v1     363105 16 +   1495729 I
e macFas5.chr4             30114215  0 - 170955103 C
e rheMac8.chr4             30824709 16 + 172585720 I
e nomLeu3.chr1a            74946748  0 + 122973662 C

a score=67541.000000
s hg38.chr6_GL000254v2_alt  1468897 5 +   4827813 TAAAA
s panTro5.chr6             30338359 5 + 175400573 TAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30572705 5 + 173848474 TAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     279761 5 +   2037526 TAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74946748 5 + 122973662 TAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30824725 5 + 172585720 TAAAA
i rheMac8.chr4             I 16 C 0
s macFas5.chr4             30114215 5 - 170955103 TAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     363121 5 +   1495729 TAAAA
i macNem1.NW_012012100v1   I 16 C 0
s cerAty1.NW_012002535v1     465216 5 -    863181 TAAAA
i cerAty1.NW_012002535v1   I 16 C 0
s chlSab2.chr17            29614885 5 -  71996105 TAAAA
i chlSab2.chr17            I 16 C 0
s manLeu1.NW_012107142v1     324927 5 -    735854 TAAAA
i manLeu1.NW_012107142v1   I 16 C 0
s colAng1.NW_012115577v1     252451 5 -   1829203 TAAAA
i colAng1.NW_012115577v1   I 16 C 0
s calJac3.chr4             30446500 5 + 171630274 TAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           258089 5 +    515838 TAAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     887052 5 -   1771730 TAAAA
i cebCap1.NW_016107755v1   I 17 C 0
s aotNan1.NW_018496901v1      63025 5 -    486031 TAAAA
i aotNan1.NW_018496901v1   I 17 C 0
s otoGar3.GL873550           296767 5 +  18854210 TAAAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26331882 5 +  26524999 TAAAG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             9063 31 +     53444 I
e proCoq1.NW_012149775v1     145887 174 -   1411461 I

a score=176351.000000
s hg38.chr6_GL000254v2_alt  1468902 19 +   4827813 GCTCTTAC-CCATGGCCATA
s panTro5.chr6             30338364 18 + 175400573 -CTCTTAC-CCATGACCATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30572710 18 + 173848474 -CTCTTAC-CCATGACCATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     279766 19 +   2037526 GCTCTTAC-CCATGGCCATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74946753 19 + 122973662 GCTCTTAC-CCATGACCACG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30824730 19 + 172585720 GCTCTTAC-CCATGATCATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30114220 19 - 170955103 GCTCTTAC-CCATGATCATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     363126 19 +   1495729 GCTCTTAC-CCATGATCATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     465221 19 -    863181 GCTCTTAC-CCATGGTCATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29614890 19 -  71996105 GCTCTTAC-CCATGATCATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     324932 19 -    735854 GCTCTTAC-CCATGATCATG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     252456 19 -   1829203 GCTCTTAC-CCATGATCATG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30446505 17 + 171630274 --GTTTAC-CCGTGACCGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           258094 17 +    515838 --CTTTAC-CCATGACCATG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     887057 17 -   1771730 --CGTTAC-CCATGATCATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      63030 17 -    486031 --GTTTAC-CCATGACCATG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           296772 19 +  18854210 ATTCTTAC-CCATGACCATG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26331887 19 +  26524999 GTCCTCACACCATCACCCA-
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297             9094 16 +     53444 GCTCTTAC-CCACCACG---
i dasNov3.JH567297         I 31 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     145887 174 -   1411461 I

a score=1024125.000000
s hg38.chr6_GL000254v2_alt  1468921 78 +   4827813 GTTTTTCATCTTGACATCCTCAGCACTTACCATGGTACCTGGCACAAAACAGCTAATTTTT--CAGTTGCCATACTGAAC
s panTro5.chr6             30338382 78 + 175400573 GTTTTTCATCTTGACATCCTCAGCACTTACCATGGTACCTGGCACAAAACAGCTAATTTTT--CAGTTGCCATACTGAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30572728 78 + 173848474 GTTTTTCATCTTGACATCCTCAGCACTTACCATGGTACCTGGCACAAAACAGCTAATTTTT--CAGTTGCCATACTGAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     279785 78 +   2037526 GTTTTTCATCTTGACATCCTCAGCACTTACCATGGTACCTGGCACAAAACAGCTAATTTTT--CAGTTGCCATACTGAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74946772 78 + 122973662 GTTTTTCATCTTGACACCCTCAGCACTTACCATGGTTCCTGGCACAAAACAGCTAATTTTT--CAGTTGCCATACTAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30824749 78 + 172585720 GTTTTTCATCTTGACATCCTCAGCACTTACCATGGTACCTGGCACAAAACAGCTAATTTTT--CAGTTGCCATACTAAAC
i rheMac8.chr4             C 0 I 2
s macFas5.chr4             30114239 78 - 170955103 GTTTTTCATCTTGACATCCTCAGCACTTACCATGGTACCTGGCACAAAACAGCTAATTTTT--CAGTTGCCATACTAAAC
i macFas5.chr4             C 0 I 2
s macNem1.NW_012012100v1     363145 78 +   1495729 GTTTTTCATCTTGACATCCTCAGCACTTACCATGGTACCTGGCACAAAACAGCTAATTTTT--CAATTGCCATACTAAAC
i macNem1.NW_012012100v1   C 0 I 2
s cerAty1.NW_012002535v1     465240 78 -    863181 GTTTTTCATCTTGACATCCTCAGCACTTACCACGGTACCTGGCACAAAACAGCTAATTTTT--CAGTTGCCATACTAAAC
i cerAty1.NW_012002535v1   C 0 I 2
s chlSab2.chr17            29614909 78 -  71996105 GTTTTTCATCTTGACATCCTCAGCACTTACCATGGTACCTGGCACAAAACAGCTAATTTTT--CAGTTGCCATACTAAAC
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012107142v1     324951 78 -    735854 GTTTTTCATCTTGACATCCTCAGCACTTACCACGGTACCTGGCACAAAACAGCTAATTTTT--CAGTTGCCATACTAAAC
i manLeu1.NW_012107142v1   C 0 I 2
s colAng1.NW_012115577v1     252475 78 -   1829203 GTTTTTCATCTTGACATCCTCAGCACTTACCATGGTACCTGGCACAAAACAGCTAATTTTT--CAGTTGCCATACTAAAC
i colAng1.NW_012115577v1   C 0 I 2
s calJac3.chr4             30446522 78 + 171630274 GTTTTTCATCTTGACATCCTCAGCACTTATCATGGTACCTGGCACAAAATCACTAATTTTT--CAGCTGCCATACTAAAC
i calJac3.chr4             C 0 I 2
s saiBol1.JH378341           258111 78 +    515838 GGTTTTCATCTTGACATCCTCAGCACTTATCATGGTAGCTGCCACAAAATAGCTAATTTTT--CAGTTGCCATACTAAAC
i saiBol1.JH378341         C 0 I 2
s cebCap1.NW_016107755v1     887074 78 -   1771730 GTTTTTCATCTTGACATCCTCAGTACTTACCATGGCACCTGGCACAAAGTAGCTAATCTTT--CAGTTGCCATACTAAAC
i cebCap1.NW_016107755v1   C 0 I 2
s aotNan1.NW_018496901v1      63047 78 -    486031 GTTTTTCATCTTGACATCCTCAGTACTTATCATGGTACCTGCCACAGAATAGCTAATTTTT--CAGTTGCCGTACTAAAC
i aotNan1.NW_018496901v1   C 0 I 2
s proCoq1.NW_012149775v1     146061 78 -   1411461 GTTTTCCACCTTGATGTCCTCAGCACTTACCGCAATACTTGACCCAAAATAGCTAATCTTT--CAGTTGCCATACTACAC
i proCoq1.NW_012149775v1   I 174 I 34
s otoGar3.GL873550           296791 78 +  18854210 CTTCGTCATCTTGATGTCCTCAGCACTTACCACAATACTTGGCCCCAAATAACCATTTTTT--CAGTTGTCATGCTAAAC
i otoGar3.GL873550         C 0 I 2
s canFam3.chr35            26331906 66 +  26524999 ------TTTCTTTGTCTCCTTGTCTCATACCCAGGTCCCTGGAGCAGAACAG------TTT--GTGTTGCTGTGTTAAAT
i canFam3.chr35            C 0 I 2
s dasNov3.JH567297             9110 76 +     53444 --TCTCCATCTCCACGCCCTCGGCACTTACAGCAGCAGCTGGCACA-CGCGGTTGCTCCCTGGCCGCGGCCGTATCCAC-
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I

a score=299132.000000
s hg38.chr6_GL000254v2_alt  1468999 30 +   4827813 AGCCATTTTATACaggctctcta-tattcca
s panTro5.chr6             30338460 30 + 175400573 AGCCATTTTATACAGGCTGTCta-tattcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30572806 30 + 173848474 AGCCATTTTATACAGGCTGTCta-tattcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     279863 30 +   2037526 AGCCATTTTATACAGGctctcta-tattcca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74946850 30 + 122973662 AGCCATTTTATACaggctctcta-tattcca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30824829 30 + 172585720 AGCCATTTTATACAGGCGctcta-tattcca
i rheMac8.chr4             I 2 C 0
s macFas5.chr4             30114319 30 - 170955103 AGCCATTTTATACAGGCGctcta-tattcca
i macFas5.chr4             I 2 C 0
s macNem1.NW_012012100v1     363225 30 +   1495729 AGCCATTTTATACAGGCGctcta-tattcca
i macNem1.NW_012012100v1   I 2 C 0
s cerAty1.NW_012002535v1     465320 30 -    863181 AGCCATTTTATACAGGCGctcta-tattcca
i cerAty1.NW_012002535v1   I 2 C 0
s chlSab2.chr17            29614989 30 -  71996105 AGCCATTTTATACAGGCGCTCTG-TATTCCA
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012107142v1     325031 30 -    735854 AGCCATTTTATACAGGCGctcta-tattcca
i manLeu1.NW_012107142v1   I 2 C 0
s colAng1.NW_012115577v1     252555 30 -   1829203 AGCCATTTTATACAGGCActcta-tactcca
i colAng1.NW_012115577v1   I 2 C 0
s calJac3.chr4             30446602 30 + 171630274 AGCCATTTTATGCAGGCTGTCTA-TGTTCCA
i calJac3.chr4             I 2 C 0
s saiBol1.JH378341           258191 29 +    515838 AGTC-TTTTATTCaggctctcta-tgtccca
i saiBol1.JH378341         I 2 C 0
s cebCap1.NW_016107755v1     887154 30 -   1771730 GGCCATTTTATACAGGctctcta-tgttcca
i cebCap1.NW_016107755v1   I 2 C 0
s aotNan1.NW_018496901v1      63127 30 -    486031 AGCCATTTTATGTAGGCTGTCTA-TGTTCCA
i aotNan1.NW_018496901v1   I 2 C 0
s otoGar3.GL873550           296871 30 +  18854210 AGCCATTTTTTACAGGCtttcta-tgtacca
i otoGar3.GL873550         I 2 I 2
s canFam3.chr35            26331974 16 +  26524999 AGCCATTTGGTAGAGG---------------
i canFam3.chr35            I 2 C 0
s dasNov3.JH567297             9186 27 +     53444 -AGCACTTTCCAGAGGCCAGGTACTGCT---
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     146139 34 -   1411461 I

a score=2115787.000000
s hg38.chr6_GL000254v2_alt  1469029 185 +   4827813 atgacaacaatctttaggcaacattgttaagtga----cagaacagtgtttagtatgcaaaactttgcttaataaaggggagaaataccaatat------------------------------atatagttgtatttaacttctatttacataaagaaacattgaaaggatacgcagaaaactaataaaagtgtgtaccggtgggccagggac-ggggg
s panTro5.chr6             30338490 185 + 175400573 atgacaacaatctttaggcaacattgttaagtga----cagaacagtgtttagtatgcaaaactttgcttaataaaggggagaaataccaatat------------------------------atatagttgtatttaacttctatttacataaagaaacattgaaaggatacgcagaaaactaataaaagtgtgtaccggtgggccagggac-ggggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30572836 185 + 173848474 atgacaacaatctttaggcaacattgttaagtga----cagaacagtgtttagtatgcaaaactttgcttaataaaggggagaaataccaatat------------------------------atatagttgtatttaacttctatttacataaagaaacattgaaaggatacgcagaaaactaataaaagtgtgtaccggtgggccagggac-ggggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     279893 185 +   2037526 atgacaacaatctttaggcaacattgttaactga----cagaacagtgtttagtatgcaaaactttgctcaataaaggggagaaataccaatat------------------------------atatagttgtatttgacttctatttacataaagaaacattgaaaggatacgcagaaaactaataaaagtgtgtaccggtgggccagggac-ggggg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74946880 186 + 122973662 atgacaacaatctttaggcaacattgctaagtga----cagaacagtgtttggtatgcaaaactttgcttaataaaagggataaataccaatat------------------------------atatagttgtatttaacttctatttacataaagaaacattgaaaggatacacagaaaactaataaaagtgtgtaccggtgggccagggacaggggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30824859 183 + 172585720 atgacaacaatctttaggcaacattgttaagtga----cagaacagtgtttagaatgcaaaaccttgcttaataaaagcgagaaatacca--at------------------------------atatagttgtatttaacttctacttacataaagaaacattgaaaggatacacagaaagctaacaaaagtttgtaccggtgggcccgggat-ggggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30114349 183 - 170955103 atgacaacaatctttaggcaacattgttaagtga----cagaacagtgtttagaatgcaaaaccttgcttaataaaagcgagaaatacca--at------------------------------atatagttgtatttaacttctacttacataaagaaacattgaaaggatacacagaaagctaacaaaagtttgtaccggtgggcccgggat-ggggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     363255 183 +   1495729 atgacaacaatctttaggcaacattgttaagtga----cagaacagtgtttagaatgcaaaaccttgcttaataaaagcgagaaatacca--at------------------------------atatagttgtatttaacttctacttacataaagaaacattgaaaggatacacagaaagctaacaaaagtttgtaccggtgggcccgggat-ggggg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     465350 183 -    863181 atgacaacaatctttaggcaacattgttaagtga----cagaacagtgtttagaatgcaaaaccttgcttaataaaagcgagaaatacca--at------------------------------atatagttgtatttaacttctacttacataaagaaacattgaaaggatacacagaaagctaacaaaagtttgtaccggtgggccagggat-ggggg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29615019 183 -  71996105 ATGACAACAatctttaggcaacattgttaagtga----cagaacagtgtttagaatgcaaaaccttgcttaataaaagcgagaaatacca--at------------------------------atatagttgtatttaacttctacttacataaagaaacattgaaaggatacacagaaagctaacaaaagtttgtaccggtgggcccgggat-ggggg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     325061 183 -    735854 atgacaacaatctttaggcaacattgttaagtga----cagaacagtgtttagaatgcaaaaccttgcttaataaaagtgagaaatacca--at------------------------------atatagttgtatttaacttctacttacataaagaaacattgaaaggatacacagaaagctaacaaaagtttgtaccggtgggccagggat-ggggg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     252585 183 -   1829203 atgacaacaatctttaggcaacattgttaagtga----cagaacagtgtttagaatgcaaaactttgcttaataaaatcgagaaatacca--at------------------------------atgtagttgtatttaacttctacttacataaagaaacattgaaaggatacacagaaagctaataaaagtttgtaccggtgggccagggat-ggggg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30446632 184 + 171630274 ATGACAACAGTGTTTAGGCAacattgttaagtga----cagaacagtgtttagtatgcaaaacttttcttaataaaagggagacatagctatat------------------------------atatacttgtattt-acttctacttacataaagaaacattgaaaggatacacagaaaactaataaaagtatctacctatgggCCAGGGAC-AGGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           258220 206 +    515838 atgacaacagtgtttaggcaacattgttaagtga----cagaatagtgtttagtacgcaaaactttgcttaataaaagggaaaaatagccatat--------atatatatagatatagatatagatatacatgtgttt-acttctacttacataaagaaacattgaaaagatacacagaaaactaataaaagtatgtacctatgggccagggac-agggt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     887184 214 -   1771730 atgacaacaatgtctaggcaacattgttaagtga----cagaacagtgtttagtatgcaaaactttgcttaagaaaagggagaaatatatatatatatatatatatatatatatatatatatatatatacttgtattt-acttctacttacataaagaaacattgaaaggatacacagaaaactaataaaagtatgtacctatgggccagagac-cgggt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      63157 181 -    486031 ATGACAACAATGTTTAGGCAACA---TTaagtga----cagaacagtgtttagtatgcaaaacttttcttaataaaacggagaaatagctatat------------------------------atatatttgtattt-acttctacttacataaagaaacattgaaaggatacacagaaaactaataaaagtatgtacctatgggccagggcc-agggt
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     146173 184 -   1411461 gtgacaaaaatctttagacgatattgttatgtgacaaacagaacagtgtttagcatgcaaacttttgcttaataaaaggaagaaatgccaatat------------------------------atatacttgtattt-actttgacttacat----aaacattgaaaggatacacaaggaactcataaacgtgtttacctgtgggtcagggat-ggggg
i proCoq1.NW_012149775v1   I 34 I 3949
s otoGar3.GL873550           296903 180 +  18854210 gtgataaaaatctttagacagtattgttaggtga-----aaaacagtgtctagcaggcaaatttttgcttaataagaaggagaaatgctgatat----------------------------acatatacatgtattt-acttgaacttacaa----aaacattgaaaggatgtacaaataactaataaacatgtttacctgt-ggtcagggat-gaggg
i otoGar3.GL873550         I 2 I 1
s canFam3.chr35            26331990 158 +  26524999 -GGATGGAAATCTTCAGGCTGCAGTGTT----------------AGTGTCTATGGAGCAAAA-TCTACTT---aagagggagaaacacaa--at------------------------------ctatacttg-attt-acttctgcttcta-aaagggatgctgaaaggacacacaggaa----ataaaactgcttccctgtggggcaggggt-gggg-
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297             9213 145 +     53444 GTGGCGAGGACC--CAGGCTGTA---------------C------GTGCTAACTGTGCAAAACCCTGAT-AGCAAAAGGGAGGGCTGCGA----------------------------------ATATACCTGTATTTGCCC---------------GAACCCTGGAAGCATACACAGGAAACTCAAGGAGGCGTTTACCTGTGGGGTAGGGAT-GGGG-
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I

a score=1244253.000000
s hg38.chr6_GL000254v2_alt  1469214 120 +   4827813 tagtggtaggtggaatgaatgaagaagggcaaggtggtcacagtcctacttaatctatacctttta-atatat-tat-tttttga------gccaagtgtat----gtataaccCTT------TAAG--TTACATAGTTAA
s panTro5.chr6             30338675 120 + 175400573 tagtggtaggtggaatgaatgaagaagggcaaggtggtcacagtcctacttaatctatacctttta-atatat-tat-tttttga------gccaagtgtat----gtataaccCTT------TAAG--TTACATAGTTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30573021 120 + 173848474 tagtggtaggtggaatgaatgaagaagggcaaggtggtcacagtcctacttaatctatacctttta-atatat-tat-tttttga------gccaagtgtat----gtataaccCTT------TAAG--TTACATAGTTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     280078 120 +   2037526 tagtggtaggtggaATGAATGAAGAAGGGCAAGGTGGTCACAGTCCTACTTAATCTATACCTTTTA-ATATAT-TAT-TTTTTGA------GCCAAGTGTAT----GTATAACCCTT------TAAG--TTACATAGTTAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74947066 120 + 122973662 tagtggtagatggaatgaatgaagaagggcaaggtggtcacagtcttacttaatctatacctttta-atatat-tat-tttttga------accaagtgaat----gtataaccCTT------TAAG--TTACATAGTTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30825042 117 + 172585720 tagtggtagatggaatgaat---gaagggcaaggtggtcacaatcctacttaatgtgtacctttta-atatat-tat-tttttga------gccaagtgaat----gtATAACCCTT------TAAG--TTACATAGTTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30114532 117 - 170955103 tagtggtagatggaatgaat---gaagggcaaggtggtcacaatcctacttaatgtgtacctttta-atatat-tat-tttttga------gccaagtgaat----gtATAACCCTT------TAAG--TTACATAGTTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     363438 117 +   1495729 tagtggtagatggaatgaat---gaagggcaaggtggtcacaatcctacttaatgtgtacctttta-atatat-tat-tttttga------gccaagtgaat----gtATAACCCTT------TAAG--TTACATAGTTAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     465533 117 -    863181 tagtggtagatggaatgaat---gaagggcaaggtggtcacaatcctacttaatgtgtacctttta-atatat-tat-tttttga------gccaagtgaat----gtATAACCCTT------TAAG--TGGCATAGTTAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29615202 117 -  71996105 tagtggtagatggaatgaat---gaagggcaaggtggtcacaatcctacttaatgtgtacctttta-atatat-tat-tttttga------gccaagtgaat----gtATAACCCTT------TAAG--TTACATAGTTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     325244 117 -    735854 tagtggtagatggaatgaat---gaagggcaaggtggtcacaatcctacttaatgtgtacctttta-atatat-tat-tttttga------gccaagtgaat----gtATAACCCTT------TAAG--TGGCATAGTTAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     252768 117 -   1829203 tagtggtaggtggaatgaat---gaagggcaaggtggtcacaatcctacttaatgtgtacctttta-atatat-tat-tttttga------gccaagtgagt----gtATAACCCTT------TAAG--TTACATAGTTAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30446816 122 + 171630274 TTGTGGTAAATGGAATTAATGAAGAAGGACAACGTGGTCACCACTCTACTTAATGTACACTTTTTTTATATAT-TACTTTTTTGA------GCTAAGCGAAT----GTATAATCCTT------TAAG--TTACATAGTTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           258426 123 +    515838 ttgtggtagacagAATGAATGAAGAAGGGCAAGGTGGTCACAACCCTGCTTAATGTACATGttttatatatatatatatatttGA------GCCAAGTGAAT----GGATAATCCTT------TAAG--TTATGCAGTTAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     887398 121 -   1771730 ttgtggtagatggaatgaatgaagaaggacaaggtggtcacaaccctacttaatgtacatgttttatatatat-tat-tttttga------gccaaatgaat----gtataatcctt------taag--ttacatagttaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      63338 121 -    486031 ttgtggtagatggaatgaatgaagaaggacaaggtggtcacaaccctacttaatgtccacgttttatgtatat-tat-tttttga------gccaagtgaat----gtataatcctt------taag--ttacatagttaa
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           297084 114 +  18854210 gagtggaagatggagtgaat----aaggGCAAGGTGGTTGCAAAT---CTTGATGTACACTTC----atatat-tat-ttttttataatataCCAAGTGAAT------ATACCACTT------TATA--TTGTATAGTTAA
i otoGar3.GL873550         I 1 I 587
s canFam3.chr35            26332148 119 +  26524999 ccgtggcagacgg-gtgaat----agaggtggattggttgcaaattttcttgatggacatcttt---atgtat-tat-----tga------accaagtgaataagtgtattaccctttaaaaataaa--tTACATCATAAA
i canFam3.chr35            C 0 I 5
s dasNov3.JH567297             9358 111 +     53444 TCGTGGCAGGTGGGGCGAAT-----AGGGC--GGCGGTTACCAAT---CTTTATGTGCACCTGTC--CTCCAT-GAA-TTCTTGA------ACTGTGCCAAG----GTGCAACCCTT------TAAAACTTACACGTTCAA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     146357 3949 -   1411461 I

a score=23951.000000
s hg38.chr6_GL000254v2_alt  1469334 2 +   4827813 AA
s panTro5.chr6             30338795 2 + 175400573 AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30573141 2 + 173848474 AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     280198 2 +   2037526 AA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74947186 2 + 122973662 AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30825159 2 + 172585720 AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30114649 2 - 170955103 AA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     363555 2 +   1495729 AA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     465650 2 -    863181 AA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29615319 2 -  71996105 AA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     325361 2 -    735854 AA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     252885 2 -   1829203 AA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30446938 2 + 171630274 AA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           258549 2 +    515838 AA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     887519 2 -   1771730 aa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      63459 2 -    486031 ag
i aotNan1.NW_018496901v1   C 0 C 0
s canFam3.chr35            26332272 2 +  26524999 AG
i canFam3.chr35            I 5 I 4
s dasNov3.JH567297             9469 2 +     53444 AA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     146357 3949 -   1411461 I
e otoGar3.GL873550           297198 587 +  18854210 I

a score=51715.000000
s hg38.chr6_GL000254v2_alt  1469336  5 +   4827813 --------------TCATC
s panTro5.chr6             30338797  5 + 175400573 --------------TCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30573143  5 + 173848474 --------------TCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     280200  5 +   2037526 --------------TCATC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74947188  5 + 122973662 --------------TCATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30825161  5 + 172585720 --------------TCATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30114651  5 - 170955103 --------------TCATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     363557  5 +   1495729 --------------TCATC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     465652  5 -    863181 --------------TCATC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29615321  5 -  71996105 --------------TCATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     325363  5 -    735854 --------------TCATC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     252887  5 -   1829203 --------------TCATC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30446940  5 + 171630274 --------------TCATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           258551  5 +    515838 --------------TCATC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     887521  5 -   1771730 --------------tcaTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      63461  5 -    486031 --------------tcaTC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           297785  5 +  18854210 --------------ttatt
i otoGar3.GL873550         I 587 C 0
s canFam3.chr35            26332278  4 +  26524999 ---------------tatt
i canFam3.chr35            I 4 I 11
s dasNov3.JH567297             9471 19 +     53444 TTAAGTTGTATACCTTATT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     146357 3949 -   1411461 I

a score=2278084.000000
s hg38.chr6_GL000254v2_alt  1469341 201 +   4827813 TATTT--TTGGTTATATAATTTTGTAGTAGCAAAAAACTCAACTGAAAAATAGGAAG----CTATTCTCTCCATTTCTCTCTGTGGTCACATAGCCGCTCACGTTTAATTCTTTCTAAGCTCACAGATTGACCAACACAGCCAC--------CATACTTGAGTTTCCATGACTTTATAATTCTAGTGCCCATCACTGTCTCAATCTAGATTTCCT
s panTro5.chr6             30338802 201 + 175400573 TATTT--TTGGTTATATAATTTTGTAGTAGCAAAAAACTCAACTGAAAAATAGGAAG----CTATTCTCTCCGTTTCTCTCTGTGGTCACATAGCCGCTCATGTTTAATTCTTTCTAAGCTCACTGATTGACCAACACAGCCAC--------CATACTTGAGTTTCCATGACTTTATAACTCTAGTGCCCATCACTGTCTCAATCTAGATTTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30573148 201 + 173848474 TATTT--TTGGTTATATAATTTTGTAGTAGCAAAAAACTCAACTGAAAAATAGGAAG----CTATTCTCTCCGTTTCTCTCTGTGGTCACATAGCCGCTCATGTTTAATTCTTTCTAAGCTCACTGATTGACCAACACAGCCAC--------CATACTTGAGTTTCCATGACTTTATAACTCTAGTGCCCATCACTGTCTCAATCTAGATTTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     280205 201 +   2037526 TATTT--TTGGTTATATCATTTTGTAGTAGCAAAAAACTCAACTGAAAAATAGGAAG----CTATTCTCTCCATTTCTCTCTGTGGTCACATAGCCGCTCATGTTTAATTCTTTCTAAGCTCACAGATTGACCAACACAGCCAC--------CATACTTGAGTTTCCATGACTTTATAATTCTAGTGCCCATCACTGTCTCAATCTAGATTTCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74947193 201 + 122973662 TATTT--TTGGTTATATAATTTTGTAGTAGCAAAAAGCTGAACTGAAAAATAGGAAG----CTATTCTCTCTGTTTCTCTCTGTGGTCACATAGCCTCTCATGTTTAATTCTTTCTAGGCTCACAGATTAACCAACACAGCCAC--------CATACTTGAGTTTCCATGACTTTATAACTCTAGTTCCCATCGCTGTCTCAATCTAGATTTCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30825166 197 + 172585720 TATTT--TTGGTTATATAATTTTGTAGTAGCAAAAAACTGAAATGAAAAATAGGAAG----CTATTCTCTCCATTTCTCTCTGTGGTCACATAACCTCTCAAGT----TTCTCTCTAGGCTCACAGATTGACCAACACAGCCGC--------CATACTTGAGTTTCCATGACTTTATAACTCTAGTGCCCATCATTGTCTCAATCTAGATTTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30114656 197 - 170955103 TATTT--TTGGTTATATAATTTTGTAGTAGCAAAAAACTGAACTGAAAAATAGGAAG----CTATTCTCTCCATTTCTCTCTGTGGTCACATAACCTCTCAAGT----TTCTCTCTAGGCTCACAGATTGACCAACACAGCCAC--------CATACTTGAGTTTCCATGACTTTATAACTCTAGTGCCCATCATTGTCTCAATCTAGATTTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     363562 197 +   1495729 TATTT--TTGGTTATATAATTTTGTAGTAGCAAAAAACTGAACTGAAAAATAGGAAG----CTATTCTCTCCATTTCTCTCTGTGGTCACATAACCTCTCAAGT----TTCTCTCTAGGCTCACAGATTGACCAACACAGCCAC--------CATACTTGAGTTTCCATGACTTTATAACTCTAGTGCCCATCATTGTCTCAATCTAGATTTCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     465657 195 -    863181 TATTT--TTGGTTCTATAATTTGGTAGTAGCAAAAAACGGAACTGAAGAATAGGAAG----CTATTCTCTCCATTTCTCTCTGTGGTCACATAGCCTCTCATGT----TTCTCTCTAGGCTCACAGATTGACCAACACAGCCAC--------CATACTTGAGTTTCC--GAGTTTATAACTCTAGTGCCCATCATTGTCTCAATCTAGATTTCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29615326 190 -  71996105 TATTT--TTGGTTATATAATTTTGTAGTGGCAAAAAACTGAACTGAAAAATAGGAAG-----------CTCCGTTTCTGTCTGTGGTCACATAGCCTCTCATGT----TTCCCTCTAGGCTCACAGATTGACCGACACGGCCAC--------CATACTTGAGTTTCCATGACTTTATAACTCTAGTGCCCATCATTGTCTCAATCTAGATTTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     325368 197 -    735854 TATTT--TTGGTTCTATAATTTGGTAGTAGCAAAAAACGGAACTGAAAAATAGGAAG----CTATTCTCTCCATTTCTCTCTGTGGTCACATAGCCTCTCATGT----TTCTCTCTAGGCTCATAGATTGACCAACACGGCCAC--------CATACTTGAGTTTCTATGACTTTATAACTCTAGTGCCCATCATTGTCTCAGTCTAGATTTCCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     252892 197 -   1829203 TATTT--TTGGTTATATAATTTTGTAGTAGCAAAAAACTGAACTGAAAAATAGGAAG----CTATTCTCTCCGTTTCTCTCTGTGGTCATATAACCTCTCATGT----TTCTCTCTAGGCTCACAGATTGACCAACCCGGCCAC--------CATACTTGAGTTTCCATGACTTTATAACTCTAGTGCCCATCATTATCTCAATCTAGATTTCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30446945 200 + 171630274 TATTT--TTGGTTATATAATTGTGTAGTAGCAAAAACCTGAACTCAAAAATAGGAAG----CTATGCTCTCCATTTCTCTCTGCGGTCACATAGCCTCTCATGTTTATTTCTTCCTA-GCTCACAGATTGACAAGCAAGGCCAC--------CATATTTGAGTTTCCATGACTTTATAACTCTAGTGCCCATCACTGTCTCAATCTAGATTTCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           258556 201 +    515838 TATTT--TTGGTTATATAATTGTGTAGTAGCAAAAAACTAAACTCAAAAACAGGAAG----CTATGCTCTCCATTTCTCTCTGTGGTCACATAGCCTCTCATATTTATTTCTTCCTAGGCTCACAGATTGACCAGCAAGGCCAC--------CATATTTGAGTTTCCATGACTTTATAACTCTAGTGCCCATCACTGTCTCAATCTAGATTTCCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     887526 205 -   1771730 TATTT--TGGGTTATATAATTGTATAGTAGCAAAAAACCCAACTCAAAAACAGGAAGCTATCTATGCTCTCCATTCCTCTCTACGGTCACATAGCCTCTCATATTTATTTCTTCCTAGGCTCACAGATTGACCAGCAAGGCCAC--------TATATTTGAGTTTCCATGACTTTATAACTCTAGTGCCCATCACTGTCTCAATCTAGATTttct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      63466 200 -    486031 TATTT--TTGGTTATATAATTGTATAGTAGCAAAAAACTGAACTGAAAAATAGGAAG----CTATGTTCTCCATTTCTCTCAG-GGTCACATAGCCTCTCATGTTTATTTCTTCCTAGGCTCACAGATTGACCAGCAAGGCCAC--------CATATTTGAGTTTCCATGATTTTATAACTCTAGTACCCATCACTGTCTCAATCTAGATTTCCT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     150306 198 -   1411461 TATTT--TTGGTTATATCATTTTATGGTGGC-AAAAGCTGGACTGGAAAATAGGGAG----CTACTCTCTCCATTTCTCTCTGTGGTCACGTAGCCTCTCG-CCTTACTTCTTCCTGGGCTCACAGGTGGACCAAGT-GGCCGC--------CGCACTTGAGTTTCCATGACTTTGTAGCTCTGGTGCCCATCACTGTCTCAGTCCAGGTTTCCT
i proCoq1.NW_012149775v1   I 3949 I 795
s otoGar3.GL873550           297790 176 +  18854210 tattt--GGGGTTATATCATTTTGTGGTGGC-AAAAGCTGAACT--------GGGAG----CTATTTTCTCCATTTTAC-----------------------CTTTATTTACTCCTAGGATCACAAACGAACCAATA-GGCCATGATTCTTGAGTTCTCGAGTTtccatgactttataactctagtgcccatcactgtctcagtctagatttcct
i otoGar3.GL873550         C 0 I 3
s canFam3.chr35            26332293 133 +  26524999 tattttattGGTTATATCATTTTGTTG-GGAAAGAAGCTGACCTGGAAAATAGAGAG----CTACTCGCTCCAAATGGCTATG---------------------------------------------------ACATTTCCAC-------------------TTCCAGGGC-TCATGGACTTGGTGCCTGACACCATCTCAGCC------TCCT
i canFam3.chr35            I 11 I 2
s dasNov3.JH567297             9490 174 +     53444 TTATT--TCGGTGACATG---TTGTCACAGC-AAAAGCAGAACTGGCAAATGGGAAG----TCCACCGCTCCATTTCTC------ATCACCCAG--GCTCACTTTTATTTCCTCCTGGGTCCCCAGGTGGACCGACAAGG------------TACACTTGA--TCCTCTGGCAACGCAACTGCGGCCCCCGT---------AGTCTTGACTTTTT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I

a score=822117.000000
s hg38.chr6_GL000254v2_alt  1469542 76 +   4827813 TTTCCCCAA-AA----------AAAATCTGCTACGTCACTTGCtataatttctagctctctgccaaatgtttcacacatagctttta
s panTro5.chr6             30339003 76 + 175400573 TTCCCCCCA-AA----------AAAATCTGCTATGTCACTTGCtataatttctagctctctgccaaatgtttcacacatagctttta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30573349 76 + 173848474 TTCCCCCCA-AA----------AAAATCTGCTATGTCACTTGCtataatttctagctctctgccaaatgtttcacacatagctttta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     280406 76 +   2037526 TTTCCCCCA-AA----------AAAATCTGCTATGTCACTTGCtataatttctagctctctgccaaatgtttcacacatagctttta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74947394 75 + 122973662 TTTCCCC-A-AA----------AAAATCTGCTATGTCACTTGCtataatttctagctttctgccaaatgtttcacgcatggctttta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30825363 75 + 172585720 TTTCCCC-C-AA----------AAAGTCTGCTATGTCACTTGCtataatttctagctctctgccaaatgtttcatgcatggctttta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30114853 75 - 170955103 TTTCCCC-C-AA----------Aaagtctgctatgtcacttgctataatttctagctctctgccaaatgtttcatgcatggctttta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     363759 75 +   1495729 TTTCCCC-C-AA----------AAAGTCTGCTATGTCACTTGCtataatttctagctctctgccaaatgtttcatgcatggctttta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     465852 75 -    863181 TTTCCCC-C-AA----------AAAGTCTGCTATGTCACTTGCtataatttctagctctctgccaaatgtttcatgcatggctttta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29615516 75 -  71996105 TTTCCCC-C-AA----------AAAGTCTGCCATGTCACTTGCtataatttctagctctctaccaaatgtttcatgcatggctttta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     325565 75 -    735854 TTTCCCC-C-AA----------AAAGTCTGCTATGTCACTTGCtataatttctagctctctgccaaatgtttcatgcatggctttta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     253089 75 -   1829203 TTTCCCC-C-AA----------AAAGTCTGCTATGTCACTTGCtataatttctagctctctgccaaatgtttcatgcatggctttta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30447145 75 + 171630274 TTTCCCC-C-CA----------AAAATCTGCTGCATCACTTGCtgtaatttctggctctctgccaaatgtttcaaacatggctttta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           258757 76 +    515838 TTTCCCC-CAAA----------AAAATCTGCTGCATCACCTGCtataatttctggctctctgccaaatgttttaagcatggctttta
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     887731 73 -   1771730 tttcccc---aa----------aaaatctgctgcatcacttgctataatttctggctctctg-caaatgtttcaagcatggctttta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      63666 76 -    486031 TTTCCCC-CCAA----------AAAATCTGCTGCATCACTTGCtataatttctggctctctgccaaatgtttcaagcatggctttta
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           297969 71 +  18854210 gttcccc-c--------------aagtctgctttgccacttgttatagtttctagttctttgccaaatttttcaagcatgtc-ttta
i otoGar3.GL873550         I 3 C 0
s canFam3.chr35            26332428 76 +  26524999 --CCTCC-C-AA-------CCCCAGATCTGTGGAGCCACTTGTTATAATTCCTACTTTTCTGCCAGGTCTTCCCAGCTCAGCTTTTC
i canFam3.chr35            I 2 C 0
s dasNov3.JH567297             9664 75 +     53444 TTTCCTT-C-TGTTTTTGCTTTCACATCTGCCATGCCACT---TAAAATTTC------TCTGCAAAAT-CTTCAAGCCTGGCTTTTA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     150504 795 -   1411461 I

a score=306459.000000
s hg38.chr6_GL000254v2_alt  1469618 28 +   4827813 tccttttgaagatagcatatacattgtt
s panTro5.chr6             30339079 28 + 175400573 tccttttgaagatagcatatacattgtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30573425 28 + 173848474 tccttttgaagatagcatatacattgtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     280482 28 +   2037526 tccttttgaagatagcatatacattgtt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74947469 28 + 122973662 tccttttgaagatagcatacacattgtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30825438 28 + 172585720 tccttttgaagatagcatatacgttgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30114928 28 - 170955103 tccttttgaagatagcatatacgttgtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     363834 28 +   1495729 tccttttgaagatagcatatacgttgtt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     465927 28 -    863181 tccttttgaagatagcatatacgttgtt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29615591 28 -  71996105 tcctttcgaagatagcgtatacgttgtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     325640 28 -    735854 tccttttgaagatagcatatacgttgtt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     253164 28 -   1829203 tccttttgaagatagcatatacgttgtt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30447220 28 + 171630274 tctttttgaacatagcatatacattgtt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           258833 28 +    515838 tctttttgaacatagcatatacattgtt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     887804 28 -   1771730 tctttttgaacatagtatatacattgtt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      63742 28 -    486031 tctttttgaacatagcatatacattgtt
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           298040 22 +  18854210 tctttttaaa------acatgcatagtt
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26332504 27 +  26524999 TTCCTTC-AATGTGGCATCTACGTTGCT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             9739  0 +     53444 C
e proCoq1.NW_012149775v1     150504 795 -   1411461 I

a score=359768.000000
s hg38.chr6_GL000254v2_alt  1469646 34 +   4827813 ------------atatagtctatgcccaataaccccagagtctgga
s panTro5.chr6             30339107 34 + 175400573 ------------atacagtctatgcccaataaccccagagtctgga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30573453 34 + 173848474 ------------atacagtctatgcccaataaccccagagtctgga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     280510 34 +   2037526 ------------atatagtctatgcccaataaccccagagtctgga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74947497 34 + 122973662 ------------atacagtctatgcccaataaccccagaggctgga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30825466 34 + 172585720 ------------atacagtctatgcccaataaccccagagtctgga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30114956 34 - 170955103 ------------atacagtctatgcccaataaccccagagtctgga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     363862 34 +   1495729 ------------atacagtctatgcccaataaccccagaggctgga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     465955 34 -    863181 ------------atacagtctatgcccaataaccccagagtctgga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29615619 34 -  71996105 ------------ataccgtctctgcccaataaccccagaggctgga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     325668 34 -    735854 ------------atacagtctatgcccaataaccccagagtctgga
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     253192 34 -   1829203 ------------atacagtctctgcccaataaccccagggtctgga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30447248 34 + 171630274 ------------atacagtctatgcccaataaccccagagtctgga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           258861 34 +    515838 ------------atagagcctatgcccaataacaccagagtctgga
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     887832 34 -   1771730 ------------atacaatctatgcccaataacaccagagtctgga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      63770 34 -    486031 ------------atataatctatgcccaataataccagagtctgaa
i aotNan1.NW_018496901v1   C 0 C 0
s canFam3.chr35            26332531 46 +  26524999 GCCCCCCACCCTCTCCTGTCTGTGACCAGAAACTCCAGTGTCTGAA
i canFam3.chr35            C 0 I 3
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             9739  0 +     53444 C
e proCoq1.NW_012149775v1     150504 795 -   1411461 I
e otoGar3.GL873550           298062  0 +  18854210 C

a score=215999.000000
s hg38.chr6_GL000254v2_alt  1469680 31 +   4827813 agccccatgggtctgattctgttgtctg-ttt---
s panTro5.chr6             30339141 30 + 175400573 agccccattggtctgattctgttgtctg--tt---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30573487 30 + 173848474 agccccattggtctgattctgttgtctg--tt---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     280544 31 +   2037526 agccccatgggtctgattctgttgtctg-ttt---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74947531 32 + 122973662 agccccgtgggtctgattctgttgtctagttt---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30825500 28 + 172585720 agccccgtgggtctgattctgttgtttg-------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30114990 28 - 170955103 agccccgtgggtctgattctgttgtttg-------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     363896 28 +   1495729 agccccgtgggtctgattctgttgtttg-------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     465989 28 -    863181 agccccgtgggtctgattctgttgtttg-------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29615653 28 -  71996105 agccccgtgggtctgattctgttgtctg-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     325702 28 -    735854 agccccgtgggtctgattctgttgtttg-------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     253226 28 -   1829203 agccccgtgggtctgattctggtgtctg-------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30447282 31 + 171630274 agctgtgtgggtctgattctgttttctg----ttt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           258895 31 +    515838 agctgtgtgggtctgattctgttgtctg----ttt
i saiBol1.JH378341         C 0 I 78
s cebCap1.NW_016107755v1     887866 31 -   1771730 agctgtgtgggtctgattctgttgtctg----ttt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      63804 31 -    486031 agctgtgtgggtttaactctgttgtctg----ttt
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             9739  0 +     53444 C
e proCoq1.NW_012149775v1     150504 795 -   1411461 I
e canFam3.chr35            26332577  3 +  26524999 I
e otoGar3.GL873550           298062  0 +  18854210 C

a score=2548.000000
s hg38.chr6_GL000254v2_alt  1469711 1 +   4827813 t
s panTro5.chr6             30339171 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30573517 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     280575 1 +   2037526 t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74947563 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30447313 1 + 171630274 t
i calJac3.chr4             C 0 I 1
s cebCap1.NW_016107755v1     887897 1 -   1771730 t
i cebCap1.NW_016107755v1   C 0 I 75
s aotNan1.NW_018496901v1      63835 1 -    486031 t
i aotNan1.NW_018496901v1   C 0 I 19
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             9739 0 +     53444 C
e proCoq1.NW_012149775v1     150504 795 -   1411461 I
e canFam3.chr35            26332577 3 +  26524999 I
e saiBol1.JH378341           258926 78 +    515838 I
e otoGar3.GL873550           298062 0 +  18854210 C
e colAng1.NW_012115577v1     253254 0 -   1829203 C
e manLeu1.NW_012107142v1     325730 0 -    735854 C
e chlSab2.chr17            29615681 0 -  71996105 C
e cerAty1.NW_012002535v1     466017 0 -    863181 C
e macNem1.NW_012012100v1     363924 0 +   1495729 C
e macFas5.chr4             30115018 0 - 170955103 C
e rheMac8.chr4             30825528 0 + 172585720 C

a score=69364.000000
s hg38.chr6_GL000254v2_alt  1469712 23 +   4827813 tatttttgtt---------------tttt-----tttcttttc
s panTro5.chr6             30339172 19 + 175400573 tgtttttgtt---------------tttt---------ttttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30573518 28 + 173848474 tgtttttgtt---------------tttttttcttttcttttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     280576 25 +   2037526 tatttttgtt---------------tttt---tttttcttttc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74947564 25 + 122973662 tttgtttgtt---------------tgtt---ttgtttttttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30825528 23 + 172585720 --ttgttgtt---------------tttt---cttttcttttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30115018 23 - 170955103 --ttgttgtt---------------tttt---cttttcttttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     363924 23 +   1495729 --ttgttgtt---------------tttt---cttttcttttc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     466017 38 -    863181 --ttgttgttttttcttttcttttctttt---cttttcttttc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29615681 23 -  71996105 --ttgttgtt---------------tttt---cttttcttttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     325730 28 -    735854 --ttgttgtt----------ttttctttt---cttttcttttc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     253254 20 -   1829203 --ttgttgtt------------------t---tatttcttttc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30447315 25 + 171630274 tattagtgtg---------------tgtg---tgtgtgtgtgt
i calJac3.chr4             I 1 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             9739  0 +     53444 C
e proCoq1.NW_012149775v1     150504 795 -   1411461 I
e canFam3.chr35            26332577  3 +  26524999 I
e saiBol1.JH378341           258926 78 +    515838 I
e otoGar3.GL873550           298062  0 +  18854210 C
e aotNan1.NW_018496901v1      63836 19 -    486031 I
e cebCap1.NW_016107755v1     887898 75 -   1771730 I

a score=54335.000000
s hg38.chr6_GL000254v2_alt  1469735 10 +   4827813 ttttcttttt
s panTro5.chr6             30339191 10 + 175400573 ttttcttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30573546 10 + 173848474 ttttcttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     280601 10 +   2037526 ttttcttttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74947589 10 + 122973662 ttttcttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30825551 10 + 172585720 ttttcttgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30115041 10 - 170955103 ttttcttttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     363947 10 +   1495729 ttttcttttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     466055 10 -    863181 ttttcttttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29615704 10 -  71996105 ttttcttttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     325758 10 -    735854 ttttcttttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     253274 10 -   1829203 ttttcttttc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30447340 10 + 171630274 gtgtgtgtgt
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496901v1      63855 10 -    486031 gtgtatgtgt
i aotNan1.NW_018496901v1   I 19 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             9739  0 +     53444 C
e proCoq1.NW_012149775v1     150504 795 -   1411461 I
e canFam3.chr35            26332577  3 +  26524999 I
e saiBol1.JH378341           258926 78 +    515838 I
e otoGar3.GL873550           298062  0 +  18854210 C
e cebCap1.NW_016107755v1     887898 75 -   1771730 I

a score=103433.000000
s hg38.chr6_GL000254v2_alt  1469745 10 +   4827813 gagacaaggt
s panTro5.chr6             30339201 10 + 175400573 gagacatggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30573556 10 + 173848474 gagacatggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     280611 10 +   2037526 gagacaaggt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74947599 10 + 122973662 gagacaaggt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30825561 10 + 172585720 gagacaaggt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30115051 10 - 170955103 gagacaaggt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     363957 10 +   1495729 gagacaaggt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     466065 10 -    863181 gagacaaggt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29615714 10 -  71996105 gagacaaggt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     325768 10 -    735854 gagacaaggt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     253284 10 -   1829203 aagacaaggt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30447350 10 + 171630274 gagacaaggt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           259004 10 +    515838 gagacaaggt
i saiBol1.JH378341         I 78 C 0
s cebCap1.NW_016107755v1     887973 10 -   1771730 gagacaaggt
i cebCap1.NW_016107755v1   I 75 C 0
s aotNan1.NW_018496901v1      63865 10 -    486031 gtgacaaggt
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297             9739  0 +     53444 C
e proCoq1.NW_012149775v1     150504 795 -   1411461 I
e canFam3.chr35            26332577  3 +  26524999 I
e otoGar3.GL873550           298062  0 +  18854210 C

a score=34455.000000
s hg38.chr6_GL000254v2_alt  1469755 3 +   4827813 ctg
s panTro5.chr6             30339211 3 + 175400573 ctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30573566 3 + 173848474 ctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     280621 3 +   2037526 ctg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74947609 3 + 122973662 ctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30825571 3 + 172585720 ctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30115061 3 - 170955103 ctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     363967 3 +   1495729 ctg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     466075 3 -    863181 ctg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29615724 3 -  71996105 ctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     325778 3 -    735854 ctg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     253294 3 -   1829203 ctg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30447360 3 + 171630274 ccg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           259014 3 +    515838 ctg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     887983 3 -   1771730 ctg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      63875 3 -    486031 ctg
i aotNan1.NW_018496901v1   C 0 C 0
s dasNov3.JH567297             9739 3 +     53444 CGG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     150504 795 -   1411461 I
e canFam3.chr35            26332577 3 +  26524999 I
e otoGar3.GL873550           298062 0 +  18854210 C

a score=647739.000000
s hg38.chr6_GL000254v2_alt  1469758 62 +   4827813 gctctacggcccaggctggagtacagtggcatgatctcagctctttgcaacctctgcttccc
s panTro5.chr6             30339214 62 + 175400573 gctctacagcccaggctggagtacagtggcatgatctcagctcattgcaacctctgcttccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30573569 62 + 173848474 gctctacagcccaggctggagtacagtggcatgatctcagctcattgcaacctctgcttccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     280624 62 +   2037526 gctctacagcccaggctggagtacagtggcgtgatctcagctcattgcaacctctgcttccc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74947612 62 + 122973662 gctctacagcccaggctggagtacagtggcgtgatctcagctcattgcaacctctgcttccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30825574 62 + 172585720 gctctatagcccgggctggagtacagtggcgtgatctcagctcattgcaacctctgcctccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30115064 62 - 170955103 gctctatagcccgggctggagtacagtggcgtgatctcagctcattgcaacctctgcctccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     363970 62 +   1495729 gctctatagcccgggctggagtacagtggcgtgatctcagctcattgcaacctctgcctccc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     466078 62 -    863181 gctctacagcccaggctggagtacagtggcgtgatctcagctcattgcaacctctgtctccc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29615727 62 -  71996105 gctctatagcccaggctggagtacagtggcatgatctcagctcattgcaacctctgcctccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     325781 62 -    735854 gctctacagcccaggctggagtacagtggcgtgatctcagctcattgcaacctctgtctccc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     253297 62 -   1829203 gctctatagcccaggctggagtacagtggcgtgatctcaactcattgcaacctctgcctccc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30447363 62 + 171630274 gctccatatcccaggctggagtacagtggcatgatctcagctcattgcaacctctgcctctc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           259017 62 +    515838 gccctatagcccaggctggagtacagtggcatgatctcagctcattgcaacctctgcctcct
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     887986 62 -   1771730 gccctatagcccaggctggagtacagtggcatgatctcagctcattgcaacctctgcctccc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      63878 62 -    486031 gccctatagcccaggctggagtacagtggcatgatcccagctcattgcaacctctgcctccc
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           298062 49 +  18854210 gttatacggtct-------------gtgtaataatcccagagtctggaggcctgtgggtccc
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297             9742 19 +     53444 --------GCTCCGAC------------------------------GCAGCCTCCGC-----
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     150504 795 -   1411461 I
e canFam3.chr35            26332577  3 +  26524999 I

a score=935035.000000
s hg38.chr6_GL000254v2_alt  1469820 109 +   4827813 aagcgcaagccgtccatccacttcagcc---------accctagtagctgggactacaggtgtg-caccaccacacccaactgacttttgca-ttttttgtagaaacggagtttcaccat
s panTro5.chr6             30339276 109 + 175400573 aagcgcaagccatccatccacttcagcc---------accctagtagctgggactacaggtgtg-caccaccacacccaactaacttttgca-ttttttgtagaaacggagtttcaccat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30573631 109 + 173848474 aagcgcaagccgtccatccacttcagcc---------accctagtagctgggactacaggtgtg-caccaccacacccaactaacttttgca-ttttttgtagaaacggagtttcaccat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     280686 109 +   2037526 aagcgcaagccgtccatccacttcagcc---------accctagtagctgggactacaggtgtg-caccaccacacccaactaacttttgca-ttttttgtagaaacggagtttcaccat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74947674 109 + 122973662 aggcgcaagccgtccatccacttcagcc---------actctagtagctgggactacaggtgtg-caccaccacgcccggctaacttttgca-ttttttgtagagacggagtttcaccat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30825636 109 + 172585720 aggcgcaagctgtccacccactttagcc---------acccgagttactgggactacaggtgtg-caccaccatgcccagctaacttttgca-ttttttgtagagacggagtttcatcat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30115126 109 - 170955103 aggcgcaagctgtccacccactttagcc---------acccgagttactgggactacaggtgtg-caccaccatgcccagctaacttttgca-ttttttgtaaagacggagtttcatcat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     364032 109 +   1495729 aggcgcaagctgtccacccactttagcc---------acccgagttactgggactacaggtgtg-caccaccatgcccagctaacttttgca-ttttttgtagagacggagtttcatcat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     466140 109 -    863181 acgtgcaagctgttcacccacttcagcc---------acccaagttactgggactacaggtgtg-cagcaccacgcccgattaacttttgca-ttttttgtagagacggagtttcatcat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29615789 110 -  71996105 aggtgcaagctgtccacccacttcagcc---------acccgagttactgggactacaggtgtgccaccaccacgcccggctaacttttgca-ttttttgtagagatggcgtttcatcat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     325843 109 -    735854 acgtgcaagctgttcacccacttcagcc---------acccaagttactgggactacaggtgtg-cagcaccacgcccgattaacttttgca-ttttttgtagagacggagtttcatcat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     253359 109 -   1829203 aggtgcaagctgtccacccacttcagcc---------acccgagttactgggactacaagtgtg-cagcaccacgcccggctaacttttgca-ttttttgtagagacggagtttcatcat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30447425 118 + 171630274 aggcttaagccatccacccacttcagccatgcaagtaatgcaagtagctgggactacagctgtg-caccaccacacccggctaactttctca-ttttttgtagagatggggttttgccat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           259079 109 +    515838 gggcttaagccatccacccactttagcc---------acccgagtagctggaactacaggtgtg-aaccaccaca-ccggctaactttctcatttttttgtagagatggggttttgccat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     888048 110 -   1771730 aggcttaagccatccacccactttagcc---------acccgagtagctgggactacaggtgtg-caccaccacatccggctaactttctcatttttttgtagagacgggattttgccat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      63940 109 -    486031 aggcttaagccatctacccactttagcc---------acccgagtagctgggactacaggtgtg-caccaccacacccagctaactttccca-ttttttgtagagacggggttttgccgt
i aotNan1.NW_018496901v1   C 0 C 0
s dasNov3.JH567297             9761  30 +     53444 -------------------------------------------------------GCAGGTCTG------------------------TGCG-TCTGT--------CGGAGCTTCCGG--
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     150504 795 -   1411461 I
e canFam3.chr35            26332577   3 +  26524999 I
e otoGar3.GL873550           298111   0 +  18854210 C

a score=869477.000000
s hg38.chr6_GL000254v2_alt  1469929 102 +   4827813 gttgtgcaggctggtcttgaactcttgagctcaagtaattccccagcctc-agcctcccaaagtgctggtatggcaagcatgagccactgcacctggcctgtt
s panTro5.chr6             30339385 102 + 175400573 gttgtgcaggttggtcttgaactcatgagctcaagtaattccccagcctc-agcctcccaaagtgctggtgtgacaagcatgagccactgcacctggcctgtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30573740 102 + 173848474 gttgtgcaggttggtcttgaactcatgagctcaagtaattccccagcctc-agcctcccaaagtgctggtgtgacaagcatgagccactgcacctggcctgtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     280795 102 +   2037526 gttgtgcaggctggtcttgaactcatgagctcaagtaattccccagcctc-agcctcccaaagtgctggtatgacaagcatgagccactgcacctggcctgtt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74947783 102 + 122973662 gttgcgcaggctggtctcgaactcatgagctcaagtaatcccccagcctc-agcctcccaaagtgctgggatgacaggcatgagccaccgcacccggcctgtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30825745 102 + 172585720 gttgcccaggctggtctcgaactcatgagctcaagtaatcccccagcctc-agcctcccaaagtgctgggatgacaggcatgagccaccgcgccccgtctgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30115235 102 - 170955103 gttgcccaggctggtctcgaactcatgagctcaagtaatcccccagcctc-agcctcccaaagtgctgggatgacaggcatgagccaccgcgccccgcctgtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     364141 102 +   1495729 gttgcccaggctggtctcgaactcatgagctcaagtaatcccccagcctc-agcctcccaaagtgctgggatgacaggcatgagccaccgcgccccgcctgtt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     466249 102 -    863181 gttgcccaggctagtctcgaactcatgagctcaagtaatcccccagcctc-agcctcccaaagtgctgggatgacaagcatgagccaccgcgcccggcctgtt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29615899 102 -  71996105 gttgcccaggctggtctcgaactcatgagctcaagtaatcccccagcctc-agcctcccgaagtactgggatgacaggcatgagccaccgcgccctgcctgtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     325952 102 -    735854 gttgcccaggctagtctcgaactcatgagctcaagtaatcccccagcctc-agcctcccaaagtgctgggatgacaagcatgagccaccgcgcccggcctgtt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     253468 102 -   1829203 gttgcccaggctggtctcgagctcatgagctcaagtaatcccccagcctc-agcctcccaaagtgctgggatgacaggcatgagccaccgcacccggcctgtt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30447543 101 + 171630274 gttacccaagctggtcttgaacttatgagctcaagagatcctccagcttc-agactcccaaagtgctgggatgaca-gcatgagccaccacgcccagcctgtt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           259188 101 +    515838 gttacccaagctggtcttgaacttatgagctcaagagatcctccagcttc-agacccccaacgtgctgggatgaca-gcatgcgccaccacgcccagcctgtt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     888158 101 -   1771730 gttacccaagctggtcttgagcttatgagctcaagaggtcctccagcttc-ggacccacaaagtgtggggatgaca-gcatgcgtcaccacgcccagcctgtt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      64049 101 -    486031 gttacccaagctggtcttgaacttatgagctcaaaagatcctccagcttc-agacccccaaagtgctgggatgaca-gcatgtgccaccacgcccagcctgtt
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           298111  19 +  18854210 gttctattgtctgtttttg------------------------------------------------------------------------------------
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297             9791  70 +     53444 -------------GACGTGCGGTCATGGCCT-----GCTGCCTGCGCTTCTTGCCTCCC----TGCTGGA-------GTCTTCTCCCTGGTGACTGGTC----
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     150504 795 -   1411461 I
e canFam3.chr35            26332577   3 +  26524999 I

a score=3559125.000000
s hg38.chr6_GL000254v2_alt  1470031 320 +   4827813 tctgcttttcttgtggc-a-a---tct-----cgcctctctggg--gcttgattatttttgcttgtttgctagatgc----------------------atttgag-------------------------gcctaggatgctattatcttcttcccagaatga------ttgtttttgacactagcagTTTAGAGTCACTTTGAACAAGTTCAATGGTTACTTGAGATTCTCTGGGC-TGGGACACCATTTCTACTCCCTTTAAGCCTTTAAAGGCTGCCAAAAATGCagcttggattcttaaactctct------tcagcaaatgctcccagaacagaagcgacccc-a-gt-tgcaggctcacctccatg--tt--cctttcctttcccaaatttt
s panTro5.chr6             30339487 320 + 175400573 tctgcttttcttatggc-a-a---tct-----cgcctctctgtg--gcttgattatttttgcttgtttgctagatgc----------------------atttgag-------------------------gcctaggacgctattatcttcttccCAGAATGA------TTGTTTTGGACACTAGCAGTTTAGAGTCACTTTGAACAAGTTCAATGGTTACTTCAGATTCTCTGGGC-TGGGACACCGTTTCTACTCCCTTTAAGGCTTTAAaggctgccaaaaatgcagcttggattcttaaactctct------tcagcaaatgctcccagaacagaagcgacccc-a-gt-tgcaggctcacctccatg--tt--cctttcctttcccaaatttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30573842 320 + 173848474 tctgcttttcttatggc-a-a---tct-----cgcctctctggg--gcttgattatttttgcttgtttgctagatgc----------------------atttgag-------------------------gcctaggacgctattatcttcttccCAGAATGA------TTGTTTTGGACACTAGCAGTTTAGAGTCACTTTGAACAAGTTCGATGGTTACTTCAGATTCTCTGGGC-TGGGACACCGTTTCTACTCCCTTTAAGGCTTTAAAGGCTGCCAAAAATGCagcttggattcttaaactctct------tcagcaaatgctcccagaacagaagcgacccc-a-gt-tgcaggctcacctccatg--tt--cctttcctttcccaaatttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     280897 320 +   2037526 tctgcttttcttatggc-a-a---tct-----cacctctctggg--gcttgattatttttgcttgtttgctagatgc----------------------atttgag-------------------------gcctaggatgctattatcttcttcccagaatga------ttgtttttgacactagcagTTTAGAGTCACTTTGAACAAGTTCAATGATTACTTGAGATTCTCTGGGC-TGGGACACCatttctactccctttaagcctttaaaggctgccaaaaatgcagcttggattcttaaactctct------tcagcaaatgctcccagaacagaagcgacccc-a-gt-tgcaggctcacctccatg--tt--cctttcctttcccaaatttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74947885 321 + 122973662 tctgcttttcttatggc-a-a---tct-----cgcctctctgag--gcttgattatttttgcttgtttgttagatgc----------------------atttgag-------------------------gcctaggatgctgttatcttcttcccagaatga------ttgtttttgacactagcagTTTAGAGTCACTTTGAACAAGTTCAATGGTTACTTGAGATTTTCTGGGCTTGGGACACCATTTCTACTCCCTTTGAGCCTTTAAAGGCTGCCAAAAATGCagcttggattcttaaactctct------tcagcaaatgctcccagtacagaagcaacccc-a-gt-tgcagactcacctccatg--tt--cctttcctttcccaaatttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30825847 321 + 172585720 tctgcttttcttatggc-a-a---tct-----cacctctctggg--gcttggttatttttgcttgtttgctagatgc----------------------atttgag-------------------------gcctaagatgctgttatcttcttcccagaacga------ttgtttttgacactagcagTTTAGAGTCACTTTGAACAAGTTCAGTGGTTACTTGAGATTTTCTgggcttgggacaccatttctactccctttaagcctttcaaggctgccaaaaatgcagcttggatttttaaactctct------tcaacaaatgctcccagaacagaagcaacccc-a-gt-tgcaggctcacctccatg--tt--cctcttctttcccaaatttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30115337 321 - 170955103 tctgcttttcttatggc-a-a---tct-----cacctctctggg--gcttggttatttttgcttgtttgctagatgc----------------------atttgag-------------------------gcctaagatgctgttatcttcttcccagaatga------ttgtttttgacactagcagTTTAGAGTCACTTTGAACAAGTTCAGTGGTTACTTGAGATTTTCTGGGCTTGGGACAcaatttctactccctttaagcctttcaaggctgccaaaaatgcagcttggattcttaaactctct------tcaacaaatgctctcagaacagaagcaacccc-a-at-tgcaggctcacctccacg--tt--ccttttctttcccaaatttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     364243 321 +   1495729 tctgcttttcttatggc-a-a---tct-----cacctctctggg--gcttggttatttttgcttgtttgctagatgc----------------------atttgag-------------------------gcctaagatgctgttatcttcttcccagaatga------ttgtttttgacactagcagTTTAGAGTCACTTTGAACAAGTTCAGTGGTTACTTGAGATTTTCTGGGCTTGGGACACAATTTCTACTCCCTTTAAGCCTTTCAAGGCTGCCAAAAATGCagcttggattcttaaactctct------tcaacaaatgctctcagaacagaagcaacccc-a-gt-tgcaggctcacctccacg--tt--ccttttctttcccaaatttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     466351 321 -    863181 tctgcttttcttatggc-a-a---tct-----cgcctctctggg--acttggttacttttgcttgtttgctagatgc----------------------attTGAG-------------------------GCCTAAGATGCTGTTATCTTCTTCCTAGAATGA------TTGTTTTTGACACTAGCAGTTTAGAGTCACTTTGAACAAGTTCAGTGGTTACTTGAGATTTTCTGGGCTTGGGACACAATTTCTACTCCCTTTAAGCCTTTCAAGGCTGCCAAAAATGCagcttggattcttaaactctct------tcaacaaatgctctcagaacagaagcaacccc-a-gt-tgcaggctcacctccatg--tt--ccttttctttcccaaatttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29616001 321 -  71996105 tctgctttgcttatggc-a-a---tct-----cacctctctggg--gcttggttatttttgcttgtttgctagatgc----------------------atttgag-------------------------gcctaagatgctgttatcttcttcccagaatga------ttgtttttgacactagcagTTTAGAGTCACTTTGAACAAGTTCAGTGGTTACTTGAGATTTTCTgggcttgggacaccatttctactccctttaagcctttcagggctgccaaaaatgcagcttggattcttaaactctct------tcaacaaatgctcccagaatggaagcaacccc-a-gt-tgcaggtgcacctccatg--tt--ccttttctttcccaaatttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     326054 321 -    735854 tctgcttttcttatggc-a-a---tct-----cgcctctctggg--acttggttacttttgcttgtttgctagatgc----------------------atttgag-------------------------gcctaagatgctgttatcttcttcctagaatga------ttgtttttgacactagcagTTTAGAGTCACTTTGAACAAGTTCAGTGGTTACTTGAGATTTTCTgggcttgggacaccatttctacttcctttaagcctttcagggctgccaaaaatgcagcttggattcttaaactctct------tcaacaaatgctctcagaacagaagcaacccc-a-gt-tgcaggctcacctccatg--tt--ccttttctttcccaaatttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     253570 321 -   1829203 tctacttttcttatggc-a-g---tct-----agcctctctggg--gcttggttatttttgcttgtttgctagatgc----------------------gtttgag-------------------------gcctaagatgctgttatcttcttccCAGAATGA------TCGTTTTTGACACGAGCAGTTTAGAGTCACTTTGAAGAAGTTCAGTGGTTACTTGAGATTTTCTgggcttgggacaccatttctactccctttaagcctttcaaggctgccaaaaatgcagcttggattcttaaactatct------tcaacaaatgctcccagaacagaagcaacccc-a-gt-tgcaggctcacctccatg--tt--ccttttctttcccaaatttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30447644 324 + 171630274 tcttcttttcttattgc-a-a---tct-----cacctctctggt--gcttggttatttttgcttgtttgctaaatgc----------------------ctttgag-------------------------gccttggatgctgtcatcttcttcccaaaataatt---tttgtttttgacactagcagtttagagtcactTCGAACAGGTTAAGCGGTTGCTTCAGATTTTCTGGGCTTGGGACTCCACTTCTACTTCCTTTAAGACTCTAAAGGCGCCCAAAAATGCAGGTTGGATTCTTGAACTCTCT------Ccagcaaatgctcccagaacagaagcaacctc-a-gt-tctaggttcgcctccacg--tt--cctttcctttcccaaatttt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           259289 320 +    515838 tctgcttttcttgttgc-a-a---tct-----cgcctctctggt--gcttggttatttttgcttgtttgctagatgc----------------------atttggg-------------------------gcctcagatgctgttatcttcttcccaaaatgatt---tttgtttttgacagtagcagtttagagtcactTTGAACAAGTTCAGTGATTCCTTCAGATTTTCTGGGCTTGGGACTCCACTTCTACTTCCTTTAAGACTTTAAAGG---CCAAAAATGCAGGTTGGATTCTTGAACTCTCT------tcagcaaatgctcccagaacag-agcaactcc-a-gt-tccaggttcacctccatg--tt--cctttcctttcccaaatttt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     888259 324 -   1771730 tctgcttttcttattgc-a-a---tct-----cgcctctctggt--gtttggttatttttgcttgtttgctagatgc----------------------atttgag-------------------------gcctcggacgctgttatcttcttcccaaaatgatt---tttgtttttgacactagcagtttagagtcactTTGAACAAGTTCAGTGATTGCTTCAGATTTTCTGGGCTTGCGACTCCACTTCTACTTCCTTTAAGGCTTTAAAGGCGCCCAAAAATGCAGGTTGGATTCTTGAACTCTCT------tcagcaaatgctcccagaacagaagcaactcc-a-gt-tccaggttcacctccatg--tt--cctttcctttcccacatttt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      64150 324 -    486031 tctgcttttcttattgc-a-a---tct-----cgcctctctggt--gcttggttatttttgcttgtttgctagatgc----------------------atttgag-------------------------gcctcggatgctgttatcttcttcccaaaatgatt---tttgtttttgacactagcagtttagagtcactTTGAACAAGTTCAGTGGTTGCTTCAGATTTTCTGGGCTTAGGACTCCATCTCTACTTTCTTTAAGACTTTAAAGGTGCCCAAACATGCAGGTTGGATTCTTGAACTCTCT------tcagcaaatgctcccagaacagaagcaacttc-a-tt-tccaggttcacctccatg--tt--cctttcccttcccaaatttt
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           298130 343 +  18854210 -ctgcttttcttaccag-t-agtctct-----cacctctttggt--gcttggttacctttgcttgtttgctggatgt----------------------atttgagaaagtacttgtagaaatagtttgaagccgaggatgatgttattttctttccaaaagcatt---tttgtttttaacactagcagtttagagtcactttaaacaa--tcagTGCTTGCTTGAGATATTCT-GGCTTGAGACTCAACTTCTAGTTCATTGAAGCCTT------------AAAATGCAGCTTGGATTCTCAAACTCtttg--ggatcagcaaatgcccccaggacagaagcaaccctaa-gt-tttaggctcacctccatggatt--cctttccatccccaaatttt
i otoGar3.GL873550         C 0 I 267
s canFam3.chr35            26332580 328 +  26524999 TCTGCTTCTCTTATTGCTG-g---tct-----cttctccgtggggagcctggcgatctttgcttgcgaactaggtgtttggtaacgcatctgtaggataattcaag-------------------------gcctgcaatgatgttagtttcttcctgcaaagatt---tttgtttttgacagtagcagtctaagagTTCCTTAAACGAGCTCGG-GAT-------GAAGTTTGGGGCCTGGGACTTCATTTCTA--------------------GCTTCTAAAAATACAGCACGGGACCTC-AGCAGCCTGCAGAATCAGCACACATCCCCAG-ACAGAAGCAACCCC-ACGT-GCCAGGCTCCCCTCCTCA--GCAACCTTTCCTTTCCCAAAATTT
i canFam3.chr35            I 3 C 0
s dasNov3.JH567297             9861 263 +     53444 TTTGCTGTGCTCGGGGT-ATA---TCTGGAAGAGTCTCTGTGGG------------------------------CAC----------------------ATTCGCG-------------------------GCCCAGGAAGGTGTTGGCTCCCCTGCAAAGGATTTTGCTTCGCCTGTGACACCGGCTGTCTAGAGTCACTGTCAC--AGCTCAAAG----CCCGAG-CTCCCTGGGC-TGGGCCTCCTCTCCCCGCCC-----------TCGGGGCTGAGGAAAACGCAGCCTGGATTC-----------------TCAGCG------CCCAGGA-------AGCCCA-G-GTCTGCAGGCTTGCCTCTGCA--GG--CGCCTTCCTCCCCGAATCTT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     150504 795 -   1411461 I

a score=2340244.000000
s hg38.chr6_GL000254v2_alt  1470351 224 +   4827813 ggcccagcaattcc------------------------------------------------tcacta-ac--ctttgaata-tttaagtaagatac-ttaaaaatatt--------------------------------------------------------ttacccagcatttttagttgtcttcaaatggaggcttggtctgaattactcagtccattaatggaagcagaagcccTTCTGATGCAGGCCT-TAGTTTTTCAGTAGTTTGCTCTTCTCTGGGCCTTAGCTTTCAGAAAGAT-TCTCTTG-------TCTGT----------------AGTAGTAAAGTCTGTA
s panTro5.chr6             30339807 224 + 175400573 ggcccagcaattcc------------------------------------------------tcacta-ac--ctttgaata-tttaagtaagatac-ttaaaaatact--------------------------------------------------------ttacccagcatttttagttgtcttcaaatggaggcttggtctgaattactcagtccattaatggaagcagaaGCCCTTCTGATGCAGGCCT-TAGTTTTTCAGTAGTTTGCTCTTCTCTGGGCCTTAGCTTTCAGAAAGAT-TCTCTTG-------TCTGT----------------AGTAGTAAAGTCTGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30574162 224 + 173848474 ggcccagcaattcc------------------------------------------------tcacta-ac--ctttgaata-tttaagtaagatac-ttaaaaatact--------------------------------------------------------ttacccagcatttttagttgtcttcaaatggaggcttggtctgaattactcagtccactaatggaagcagaagcccTTCTGATGCAGGCCT-TAGTTTTTCAGTAGTTTGCTCTTCTCTGGGCCTTAGCTTTCAGAAAGAT-TCTCTTG-------TCTGT----------------AGTAGTAAAGTCTGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     281217 223 +   2037526 ggcccagcaattcc------------------------------------------------tcacta-ac--ctttgaata-tttaagtaagatac-ttaaaaatatt--------------------------------------------------------ttacccagc-tttttagttgtcttcaaatggaggcttggtctgaattactcagtccattaatggaagcagaaGCCCTTCTGATGCAGGCCT-TAGTTTTTCAGTAGTTTGCTCTTCTCTGGGCCTTAGCTTTCAGAAAGAT-TCTCTTG-------TCTGT----------------AGTAGTAAAGTCTGTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74948206 224 + 122973662 ggcccagcaattcc------------------------------------------------tcacta-ac--ctttgaata-tttaagtaagatac-ttaaaaatatt--------------------------------------------------------tgacccagcatttttagttgtcttcaaatggaggcttggtctgaattactcagtccattaatggaagcagaagcccTTCTGATGCAGGCCT-TAGTTTTTCAGTAGTTTGCTCTTCTCAGGGCCTTAGCTTTCAGAAAGAT-TCTCTTT-------TCTGT----------------AGTAGTAAAGTCTGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30826168 225 + 172585720 ggcccagcaattcc------------------------------------------------tcacta-cc--ctttgaatattttaagcaagatac-ttaaaaatatt--------------------------------------------------------ttacccagcatttttagttgtctgcacttggaggcttggtctgaattactcagtccattaatggaagcagaaGCCCTTCTGATGCAGGCCT-TAGTTTTTCAGTAGTTTGCTCTTCTCTGGGCCTTAGCTTTCAGAAGGAT-TCTCTTT-------TCTGT----------------AGTAGTAAAGTCTGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30115658 225 - 170955103 ggcccagcaattcc------------------------------------------------tcacta-cc--ctttgaatattttaagcaagatac-ttaaaaatatt--------------------------------------------------------ttacccagcatttttagttgtctgcacttggaggcttggtctgaattactcagtccattaatggaagcagaaGCCCTTCCGATGCAGGCCT-TAGTTTTTCAGTAGTTTGCTCTTCTCTGGGCCTTAGCTTTCAGAAGGAT-TCTCTTT-------TCTGT----------------AGTAGTAAAGTCTGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     364564 225 +   1495729 ggcccagcaattcc------------------------------------------------tcacta-cc--ctttgaatattttaagcaagatac-ttaaaaatatt--------------------------------------------------------ttacccagcatttttagttgtctgcacttggaggcttggtctgaattactcagtccattaatggaagcagaagcccTTCCGATGCAGGCCT-TAGTTTTTCAGTAGTTTGCTCTTCTCTGGGCCTTAGCTTTCAGAAGGAT-TCTCTTT-------TCTGT----------------AGTAGTAAAGTCTGTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     466672 225 -    863181 ggcccagcaattcc------------------------------------------------tcacta-cc--ctttgaatattttaagcaagatac-ttaaaaatatt--------------------------------------------------------ttacccagcatttttagttgtctgcacttggaggcttggtctgaattactcagtccattcatggaagcagaagcccTTCCGATGCAGGCCT-CAGTTTTTCAGTAGTTTGCTCTTCTCTGGGCCTTAGTTTTCAGAAACAT-TCTCTTT-------TCTGT----------------AGTAGTAAAGTCTGTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29616322 225 -  71996105 ggcccagcaattcc------------------------------------------------tcacta-cc--ctttgaatattttaagcaagatac-ttaaaaatatt--------------------------------------------------------ttacccagcatttttagttgtctgcacttggaggcttggtctgaattactcagtccattaatggaagcagaaGCCCTCCTGATGCAGGCCT-TAGTTTTTCAGTAGTTTGCTCTTCTCTGGGCCTTAGCTTTCAGAATGAT-TCTCTTT-------TCTGT----------------AGTAGTAAAGTCTGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     326375 225 -    735854 ggcccagcaattcc------------------------------------------------tcacta-cc--ctttgaatattttaagcaagatac-ttaaaaatatt--------------------------------------------------------ttacccagcatttttagttgtctgcacttggaggcttggtctgaattactcagtccattaatggaagcagaaGCCCTTCCGATGCAGGCCT-CAGTTTTTCAGTAGTTTGCTCTTCTCTGGGCCTTAGCTTTCAGAAACAT-TCTCTTT-------TCTGT----------------AGTAGTAAAGTCTGTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     253891 225 -   1829203 ggcccagcaattcc------------------------------------------------tcacta-cc--ctttgaatattttaagcaagatac-ttaaaaatatt--------------------------------------------------------ttacccagcatttttagttgtcttcacttggaggcttggtctgaattactcagtccattaacggaagcagaaGCCCTTCTGATGCAGGCCT-TAGTTTTTCAGTAGTTTGCTCTTCTCTGGGCCTTAGCTTTCAGAAAGAT-TCTCTTT-------TCTGT----------------AGTAGTAAAGTCTGTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30447968 223 + 171630274 ggcccagcaattcc------------------------------------------------tcactagcc--ctttaaa-t-tttaagtgagatactttaaaaatatt--------------------------------------------------------ttacccagcatttttagttgtcttcacttggaggcttggtctgaattactcagtctgctaatggaggcaaaaGCCCTTCTGATCCAGGCCA-TAGTTTTGTAGTAGTTTGCTCTTCTCTGGACCTTAGCTTCCAGAAAGAT-TCTATTT-------TCTGT----------------AGTAGTAAAGTCTG--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           259609 274 +    515838 ggctcagcaattcc------------------------------------------------tcactagcc--ctttgaatt-tttaagtaagataatttAAAAATATTTTACCCAAATAAAG--AAAATTTTTTTAAAAAAAAG----AACAACAACAAAAAGCttacccagcatttttagttgtcttcacttggaggcttggtctgaattactcagtccgctaatggaagcaaaaGCCCTTTTGATCCAGGCCA-TAGTTTTGTAGCAGTTTGCTCTTCTCTGGACTTTAGCTTTCAGAAAGGT-TCTATTT-------TCTAT----------------AGTAGTGAAGTCTG--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     888583 280 -   1771730 ggcccagcaattcc------------------------------------------------tcactagcc--ctTTGAATT-TTTAAGTAAGATACTTTAAAAATATTTTACCCAAATAAAGAAAAAATTTTTTTAAAAAGAAAGAACAACAACAACAAAAatcttacccagcatctttagttgtcttcacttggaggcttggtctgaattactcagtccgctaatggaagcaaaaGCCCTTTTGATTCAGGCCA-TAGTTTTGTAGCAGTTTGCTGTTCTCTGGGCTTTAGCTTTCAGAAAGGT-TCTATTT-------TCTAT----------------AGTAGTAAAGTCTG--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      64474 224 -    486031 ggcccagcaattcc------------------------------------------------tcactagcc--cttttaatt-tttaagtaagatactttaaaaatatc--------------------------------------------------------ttacccagcatttttagttgtcttcgtttggaggcttggtcggaattacttagtccgctaatggaagtaaaaTCCCTTCTGCTCCAGGCCA-TAGTTTTGTAGTAGTTTGCTCTTCTCTGGACCTTAGCTTCCAGAAAGAT-TCTATTT-------TCTGT----------------AGTAGTAAAGTCTG--
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           298740 299 +  18854210 agctcagaaaatccacctgcctgaacctctgagagcgctaggattacaggcatgagccatcttcccca-gctgttttgaatt-ttttagaaagatacttttaagatatt--------------------------------------------------------ttatgtagctcttttggttatcttcacttggaggcttggtctgaattactcagtccattaatggaagcagaaATCCTTCTGATTCAGGCCT-CAGTTTTTCAGTGGTTTGCTCTTCTCTGGACCTTACCTTTCAGAAATctctctctctcccttcctctgtccctcccctctcccccAGTAGTAAAGTCTGCA
i otoGar3.GL873550         I 267 C 0
s canFam3.chr35            26332908 172 +  26524999 -----------------------------------------------------------------------------GAATTTTCTC-----GATACTTTAAGAGTATT--------------------------------------------------------TTATCCAGATTTTTTAGTTGTCTTCACCTGCAGGA--GGCATGAATTCCTCAGTGCTCCCACAGAGGTGGAAACCCTTCTGATCCAGGTTTCTGGCTTTTCAGGGCTTTGCTCT------------------CAGAAAACC-TTGTTTC-------CTCTG----------------AGATGCATGGTC----
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            10124 210 +     53444 GGCCCTGCAATTCC------------------------------------------------TCAGTAGCC--CTTTGGAGGCTGGCGGTG-------GTAAACCCTTT--------------------------------------------------------TCATCCAG-GTTCGGAGCTGTCTTCACCTGAGGTC---GCTCCAGCCGCCCGG-CCTCGGATGGACGCCCCAGGCCCTCTGGTCCAGGCCC-CGGGTTTCCCGAGCTCTG---TCCTCTGGACCTCAGCGTTCAGGACAAA-GCCCTTT-------CCTTT----------------ACTAGCCAAGGCTC--
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     150504 795 -   1411461 I

a score=4137444.000000
s hg38.chr6_GL000254v2_alt  1470575 354 +   4827813 TAAAGTCTGCATGGACTTTTCTTGCGTAC----ACACATTGCCGCATCACCTCCAGTCAAGGCTGGAAGAGAATCTTGCATTTTACACATCTAATATTTCAG-AAGAGCTGGAGTCACAGCAGTCCTCTTCACTGAGCTCAGAAACAAAAACCCTG------------CTTGTGCATATATTCAGGCTGGGACCTCTAAAATGCAGACACCTAAGTGCTCCAGCTTTGAGAATTCTAGCTTCAGTGTGACAACGGCATAAGGA--GTTGCCCTACGGTGTAAAGGCCCCTGTGAGGTCTCAGTTTGCAGACCAGGATGTGACAAGGAGATTGGAGCTGCAGTCAGCTCTAGAGGCTGAAAGAGGAGCCAAACA
s panTro5.chr6             30340031 354 + 175400573 TAAAGTCTGCATGGACTTTTCTTGCATAC----ACACATTGCCGCATCACCTCCAGTCAGGGCTGGAAGAGAACCTTGCATTTTACACATCTAATATTTCAG-AAGAGCTGGAGTCACAGCAGTCCTCTTCACTGAGCTCAGAAACAAAAACCCTG------------CTTGTGCATATATTCAGGCTGGGACCTCTAAAATGCAGACACCTAAGTGCTCCAGCTTTGAGAATTCTAGCTTCAGTGTGACAACGGCATAAGGA--GTTGCCCTACGGTGTAAACGCCCCTGTGAGGTCTCAGTTTGCAGACCAGGATGTGACAAGGAGATTGGAGCTGCACTCAGCTCTAGAGGCCGAAAGAGGAGCCAAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30574386 354 + 173848474 TAAAGTCTGCATGGACTTTTCTTGCATAC----ACACATTGCCGCATCACCTCCAGTCAGGGCTGGAAGAGAACCTTGCATTTTACACATCTAATATTTCAG-AAGAGCTGGAGTCACAGCAGTCCTCTTCACTGAGCTCAGAAACAAAAACCCTG------------CTTGTGCATATATTCAGGCTGGGACCTCTAAAATGCAGACACCTAAGTGCTCCAGCTTTGAGAATTCTAGCTTCAGTGTGACAACGGCATAAGGA--GTTGCCCTACGGTGTAAACGCCCCTGTGAGGTCTCAGTTTGCCGACCAGGATGTGACAAGGAGATTGGAGCTGCACTCAGCTCTAGAGGCCGAAAGAGGAGCCAAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     281440 354 +   2037526 TAAAGTCTGCATGGACTTTTCTTGCGTAC----ACACATTGCCGCATCACCTCCAGTCAAGGCTGGAAGAGAATCTTGCATTTTACACATCTAATATTTCAG-AAGAGCTGGAGTCAGAGCAGTCCTCTTCACTGAGCTCAGAAACAAAAACCCTG------------CTTGTGCATATATTCAGGCTGGGACCTCTAAAATGCAGACACTTAAGTGCTCCAGGTTTGAGAATTCTAGCTTCAGTGTGACAACGGCATAAGGA--GTTGCCCTACGGTGTAAAGGCCCCTGTGAGGTCTCAGTTTGCAGACCAGGATGTGACAAGGAGATTGGAGCTGCACTCAGCTCTAGAGGCCGGAAGAGGAGCCAAACG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74948430 354 + 122973662 TAAAGTCTGCATGGACTTTTCTTGCATAC----ACACATTGCCGCATCACCTCTAGTCAGGGCTGGAAGAGAACCTTGCATGTTACACATCTACTATTTCAG-AAGAGCTGGAGTCAGAGCAGTCCTCTTCACTGGGTTCAGAAACAAAAAGCCTG------------CTTGTGCATATATTCAGGCTGGGACCTCCAAAATGCAGACACCTAAGTGCTCCAGCTTTGAGAATTCTAGCTTTAGTGTGACAACGGCATAAGGA--GTTGCCCTATGGCGTAAAGGCCCCTGTGAGGTCTCAGTTTGCAGACCAGGATGTGACAAGGAGATTGGAGCTGCAGTCAGCTCTAGAGGCCGAAAGAGGAGCCAAACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30826393 354 + 172585720 TAAAATTTGCATGGACTTTTCTTGCATAC----ACACATTGCTGCATCACCTCCAGTCAGGGCTAGAAGAGAACCTTGCATTTTACACATCTAATATTTCAG-AAGAGCTGGAGTCAGAGCAGTCCTCTTCACTGGGCTCAGAAACAAAAAGCCTG------------TTTGTGCACATATTCAGGCTGGGACCTCTGAAATGCAGACACCTCAGTGCTCCAGCTTTGAGAATTCTAGCTTCAGTGTGACAACGGCATAAGGA--GTTGCCCTATGGCGTAATGGCCCCTGAGAGGTCTCAGTTTGCAGACCACGATGTGACAAGGAGATTGGAGCTGCAGTCAGCTCTAGAGGCCAAAAGAGGAGCCAAACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30115883 354 - 170955103 TAAAATTTGCATGGACTTTTCTTGCATAC----ACACATTGCTGCATCACCTCCAGTCAGGGCTAGAAGAGAACCTTGCATTTTACACATCTAATATTTCAG-AAGAGCTGGAGTCAGAGCAGTCCTCTTCACTGGGCTCAGAAACAAGAAGCCTG------------TTTGTGCACATATTCAGGCTGGGACCTCTGACATGCAGACACCTCAGTGCTCCAGCTTTGAGAATTCTAGCTTCAGTGTGACAACGGCATAAGGA--GTTGCCCTATGGCGTAATGGCCCCTGAGAGGTCTCAGTTTGCAGACCACGATGTGACAAGGAGATTGGAGCTGCAGTCAGCTCTAGAGGCCAAAAGAGGAGCCAAACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     364789 354 +   1495729 TAAAATTTGCATGGACTTTTCTTGCATAC----ACACATTGCTGCATCACCTCCAGTCAGGGCTAGAAGAGAACCTTGCATTTTACACATCCAATATTTCAG-AAGAACTGGAGTCAGAGCAGTCCTCTTCACTGGGCTCAGAAACAAGAAGCCTG------------TTTGTGCACATATTCAGGCTGGGACCTCTGAAATGCAGACACCTCAGTGCTCCAGCTTTGAGAATTCTAGCTTCAGTGTGACAACGGCATAAGGA--GTTGCCCTATGGCGTAATGGCCCCTGAGAGGTCTCAGTTTGCAGACCAGGATGTGACAAAGAGATTGGAGCCGCAGTCAGCTCTAGAGGCCAAAAGAGGAGCCAAACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     466897 354 -    863181 TAAAATTTGCATGGACTTTTCTTGCATAC----ACACATTGCCGCATCACCTCCAGTCAGGGCTGGAAGAGAGCCTTGCATTTTACACATCTAATATTTCAG-AAGAGCTGGAGTCAGAGCAGTCCTCTTCACTGGGCTCAGAAACAAAAAGCCTG------------TTTGTGCACATATTCAGGCTGGGACCTCTGACATGCAGACACCTCAGTGCTCCAGCTTTGAGAACTCTAGCTTCAGTGTGACAACGGCATAAGGA--GTTGCCCTATGGCGTAATGGCCCCTGAGAGGTCTCAGTTTGCAGACCACGATGTGACAAGGAGATTGGAGCTGCAGTCAGCTCTAGAGGCCAAAAGAGGAGCCAAACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29616547 352 -  71996105 TAAAATTTGCATGGACTTTTCTTGCATAC----ACACATTGCTGCATCACCTCCAGTCAGGGCTGGAAGAGAACCTTGCATTTTACACATCTAATATTTCAG-AAGAGCTGGAGTCAGAGCAGTCCTCTTCACTGAGCTCAGAAACAAAAAGCCTG------------TTTGTGCACATATTCAGGCTGGGACCTCTGAAATGCAGACACCTCAGTGCTCCAGCTTTGAGAATTCTAGCTTCAGTGTGACAACGGCATAAGGA--GTTGCCCTATGGCGTAATGGCCCCTGAGAGGTCT--GTTTGCAGACCACGATGTGACAAGGAGATTGGAGCTGCAGTCAGCTCTAGAGGCCAAAAGAGGAGCCAAACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     326600 354 -    735854 TAAAATTTGCATGGACTTTTCTTGCATAC----ACACATTGCTGCATCACCTCCAGTCAGGGCTAGGAGAGAGCCTTGCATTTTACACATCTAATATTTCAG-AAGAGCTGGAGTCAGAGCAGTCCTCTTCACTGGGCTCAGAAACAAAAAGCCTG------------TTTGTGCACATATTCAGGCTGGGACCTCTGACATGCAGACACCTCAGTGCTCCAGCTTTGAGAACTCTAGCTTCAGTGTGACAACGGCATAAGGA--GTTGCCCTATGGCGTAATGGCCCCTGAGAGGTCTCAGTTTGCAGACCACGATGTGACAAGGAGATTGGAGCTGCAGTCAGCTCTAGAGGCCAAAAGAGGAGCCAAACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     254116 354 -   1829203 TAAAATTTGCATGGACTTTTTTTGCATAC----ACACATTGCTGCATCACCTCCAGTCAGGGCTGGAAGAGAACCTTGCATTTTACACATCTAATATTTCAG-AAGAGCTGGATTCAGAGCAGTCCTCTCCACTGGGCTCAGAAACAAAATGCCTG------------TTCGTGCACATATTCAGGCTGGGACCTCTGAAATGCAGACACCTCAGTGCTCCAGCTTTGAGAATTCTAGCTTCAGTGTGACAACGCCATAAGGA--GTTGCCTTACGGGGTAATGGCCTCTAAGAGGTCTCAGTTTGCAGACCGGGATGTGACAAGGAGATTGGAGCTGCAGTCAGCTCTAGAGGCCAAAAGAGGAGCCAAACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30448191 343 + 171630274 ---------CATGGACTTTTCTTGCATAC----ACGCATTGCCCCATTACCTCCAGTCAGGGCTGGAAGAGAACCTTGCATTTTTCACATCTAGTATTTCAG-AAGAGCTGGAGTCAGAGCAGTCCTCTTCACTGGGCCCAGAAACA-AAAAGCTG------------TTTGTGCACATATTCAGGCTGGGGCCTCTAAAATGCAGACATGTATGTGCTGCAGCTTTAAGAATTCTAGTTTCAGTGTGACAACAGCACAAGGA--GTTGCCCTGTGGCATAAAGGCCCCTGAGAGGTCTCAGTTTGCAGACCAGGTTGTGAC-AGGAGATTGGAGCTGCAGTCAGCTCTAGAGGCAGAAAGAGAAGCCAAACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           259883 306 +    515838 -----------TAAACT----CTGCATGC----ACGCATTGCCCCATTACCTCCAGTCAGGGCTGGAAGAGAACCTTGCATTTTTCACATCTAATATTTCAG-AAGAGCTGAAGTCAGAGCAGTCCTCTTCACTGGGCCCAGAAACATAAATGCTG------------TTTGTGCACATATTCAGGCTGGGGCCTCTAAAATGCAGACTTGTATGTGCTGCAGCTTTAAGAATTCTACTTTCAGTGTGACAATGGCCTAAGGA--GTTGCCC--------------------------------TGCAGACCAGGTTGTGAC-AGGGGTTTGGAGCTGCAGTCAGCTCTAGGCTCAGAAAGAGGGGCCAAACA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     888863 351 -   1771730 -----------TAAACT----CTGCATGC----ACGCATTGCCACATTACCTCCAGTCAGGGCTGGAAGAGAACCTTGCATTTTTCACATCTAATATTTCAG-AAGAGCTGAAGTCAGAGCAGTCCTCTTCACTGGGCCCAGAAACATAAAGGCTGCAAACAGCCTGATTTGTGCACATAATCAGGCTGGGGCCTCTAAAATGCAGACATGTATGTGCTGCAGCTGTAAGAATTCTAGTTT-AGTGTGACAACGGCATAAGGATCGTCGCCCTGTGGCATAAAGACCCCTGAGTGGTCTCAGTTTGCAGACCAGGATGTGAC-AGGAGATTGGAGCTGAAGTCAGCTCTAGAGGCAGAAAGAGGAGCCAAACA
i cebCap1.NW_016107755v1   C 0 I 507
s aotNan1.NW_018496901v1      64698 353 -    486031 TAAAGTCTGCATGGACTTTTCTTGCATGC----ACGCATTGCCCCATTACCTCCAGTCAGGGCTGGAAGAGAACCTTGCATTTTTCACATCTAATATTTCAG-AAGAGCTGGAGTCAGAGCAGTCCTCTTCACTGGGCGCAGAAACATAAAGGCTG------------TTTGTGCACATATTCAGGCTGGGGCCTCTAAAATGCAGACATGTATGTGCTGCAGCTTTAAGAATTCTAGTTTCAGTGTGACAACGGCATAAGGA--GCTGCCCTGTGGCGTAAAGGCCCCTGAGAGGTCTCAGTTTGCAGACCAGGTTGTGAC-AGGAGATTGGAGCTGCAGTCGGCTCTAGAGGCAGAAATAGGAGCCAAACA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     151299 350 -   1411461 TAAAGTCTGCATGGCCTTTTCTTGCATAC----ACACATTGCTGCCTCACCGCCAGCCAGGGCAAGAAGAGAAGTCTGCCTCTTACACATCTAGTATTCCAG-AAGCGCTAGGGTCAGAGCAGCCCTCCTTACCGGGCTCGGAAACAAAAGGCCCG------------TTTGCGCATGGATTCAGGCATTGGCTGCTAAGATGCTGGCAC----GCGCTGCAGCTTGGATAATTGTAGCTCCAGTGCGACACCAGTATGAGGA--GTTGCTCTGTGGCATAAAGGCCCCTGATAGGTCCCAGTTTGCAGACCAGGATGTGACAAGGAGATCGGAGCCGCAGGAAGCTCTGGAGGCAGAAAGCGGGGCCAAACA
i proCoq1.NW_012149775v1   I 795 I 738
s otoGar3.GL873550           299039 320 +  18854210 ----------GTGGACTTTTCTGGCATACAAATACACTGTTCCCCCTCATCCTCATTCCTGGTTGGATGAGAATCCTGCATCTCACACATCTAATTTTCTGGAAAGAGCTGGAATCAGAGCAGTCGTCCTTACCAGGCTCAGAAACAAAAAGCCTG------------TCTGTACATCTGTTCAGGCTAGGGCCTCTAAAATACAGACAC----ACACTGAAGCTTTGAGAATTGCAGCTCTAGTGTATCATCAGTGTAAGGA--GTTCCTCTGTGTCACAAAGGCCCCTGATAGGCCTCAGTTTGCAAGCCAGGATGTGAAAAGGAGATTGGAGCTGCAGAAA------GAGG-------------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26333080 287 +  26524999 --------ACATGGAGTTTCCCGGGGCA-----GCATGCAGCCCCCTGACC-CCAGGCAGGGCCGGAGTACAGTCTTGCA-----------------TCCAG-AAGAGCAGAAG-CAGAGTGGTCCTCCTCACCAGGCTT-GAGACAAGAGGCCTT------------TGGGTGCACAGG--------GGGGCAACTGAGCTGAAGGCCAGTCTGCTTCCCAG--------ACTCTGGCCTCAGGGCAACACCAGCAGTAGGG----------------------CCCATGATAGGTCTCAGTTTGCAGACCAGGATGTGAC-AGGAAATTGGAACTG-GGCCAGCTCTAGAAGCCGCAAAAGGAGCCAAACA
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            10334 251 +     53444 ---------CAGGGACTCTGCTCACATAC----GCA-GTGGC-----CATCGAGGGTCAGGGCTGGTAGTCGGGCT---------------------CCCAG-GGGAGCTGCGACTCGGGCCTCTGGCCCGGCTGGACCC------------CCAG------------TTGGC-----TGCTCA----GGGGCCCCT----------------------------------------GCTTCCCACTCACACC-----CCGCA--GGCGCCCC-TGGCATTAGAGCCCCTGATAGGTCTCAGTTTGCAGACCAGGATGTGACAACGAGCTTGGAGCTGCAGGCAGCTCTGGAGGCAGAAAGAGGAGCCAAACA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I

a score=51575.000000
s hg38.chr6_GL000254v2_alt  1470929 6 +   4827813 GCAAAC
s panTro5.chr6             30340385 6 + 175400573 GCAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30574740 6 + 173848474 GCAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     281794 6 +   2037526 GCAAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74948784 6 + 122973662 GCAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30826747 6 + 172585720 GAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30116237 6 - 170955103 GAAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     365143 6 +   1495729 GAAAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     467251 6 -    863181 GAAAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29616899 6 -  71996105 GAAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     326954 6 -    735854 GAAAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     254470 6 -   1829203 GAAAAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30448534 6 + 171630274 GAAAAC
i calJac3.chr4             C 0 I 510
s saiBol1.JH378341           260189 6 +    515838 GAAAAC
i saiBol1.JH378341         C 0 I 516
s aotNan1.NW_018496901v1      65051 6 -    486031 GAAAAC
i aotNan1.NW_018496901v1   C 0 I 507
s canFam3.chr35            26333367 6 +  26524999 GAAAAC
i canFam3.chr35            C 0 I 4
s dasNov3.JH567297            10585 6 +     53444 GAAGGC
i dasNov3.JH567297         C 0 I 2
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     151649 738 -   1411461 I
e otoGar3.GL873550           299359 0 +  18854210 C
e cebCap1.NW_016107755v1     889214 507 -   1771730 I

a score=7046184.000000
s hg38.chr6_GL000254v2_alt  1470935 712 +   4827813 AGAGGTGCCAAATGCTGCCTTAGAAATCTGTAAGCCAGCTAAGAGTTCTGCAGTCTCAACT---AAACAAAACTTTTTTATTCCATTGGTTTGGGGTGTACTGTTCTTAGGGCTTTTGCCAACTGAATTGGTCT-GTGGTGTCTTGAAAGATTGGGGTTCTGCACGGAAAAGGCTCGGAGGCCAGTTCTCTGAGGCTGCCTTTGTTGCAAGAAATAAAA-----------TGAATCTTTCCAGAGCC----AC-------AGCACTAGCATTTGGAGACCACTCTC----AGGGGCTTTGGGGCGTACGACTTTCGGGGCTCTGGTCCTCTGTTTCCCTATCCGTAGAATGGAGACGGCTACTCTGTGAGAAGCCCGAGGTGCGCAGGACCCAAGTGAGGAGCCGGCA-----ACCTGAAGTCCTCAGGATGGGGAGGGATCCGAAGGAGGCGGTGTGAAGACTCAAGAGGACCGCCTTGGGGTGGGAAGAGGACAGCCCGGCACTGGCTGCTGGCCCAGGTGCTGTGATGGGTTTCGTGCGC--AGAGAGGCCTGACAGCCTCTGCATCAGTGACCGGGCGAAGAGTGGGGCAGCTCGGACGGCGGTTGGGGAACGTTAGGGA--------GATTGGCGCGCGGAC---------CACTGGG----TGAGC--GCCCAGGAAC--G--CC-GGACGCGCGCCTT-CACGCCCGGGTGCCTGGCGGCGTTTTAGAAAAGCTGTATTTGAAAAGCAACCGAC-TGGGGTGAAGGC-GGGGG
s panTro5.chr6             30340391 715 + 175400573 AGAGGTGCCAAATGCTGCCTTAGAAATCTGTAAGCCAGCTAAGAGTTCTGCAGTCTCAACT---AAACAAAACTTTTTTATTCCATTGGTTTGGGGTGTACTGTTCTTAGGGCTTTTGCCAACTGAATTGGTCT-GTGGTGTCTTGAAAGATTGGGGGTCTGCACGGAAAAGGCTTGGAGGCCAGTTCTCTGAGGCTGCCTTTGTTGCAGGAAATAAAA---------TGTGAATCTTTCCAGAGCC----AC-------AGTACTAGCATTTGGAGACCACTCTC----AGGGGCCTTTGGGCGTACGACTTTCGGGGCTCTGGTCCTCTGTTTCCGTATCCGTAGAATGGAGACGGCTACTCTGCGAGAAGCCCGAGGTGCGCAGGACCCAAGTGAGGAGCCGGCA-----ACCTGAAGTCCGCAGGATGAGGAGGGATCCGAAGGAGGCGGTGTGGAGCCTCAAGAGGACTGCCTTGGGGTGGGAAGAGGACAGCCCGGCACTGGCTGCGGGCCCAGGTGCTGTGATGGGTTTCGTGCGC--GGTGAGGACTGACAGCCTCTGCATCAGTGACCGGGCGAAGAGTGGGGCAGCTCGGACGGCGGTTGGGGAACGTTAGGGA--------GGTTGGGGCGCGGAC---------CACGGGG----TGAGC--GCCCAGGAAC--G--CC-GGACGCGCGCCTT-CACGCCCGGGTGACTGGCGGCGTTTTAGAAAAGCTGTATTTGAAAAGTAACCGAT-TGGGGTGAAGGTGGGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30574746 715 + 173848474 AGAGGTGCCAAATGCTGCCTTAGAAATCTGTAAGCCAGCTAAGAGTTCTGCAGTCTCAACT---AAACAAAACTTTTTTATTCCATTGGTTTGGGGTGTACTGTTCTTAGGGCTTTTGCCAACTGAATTGGTCT-GTGGTGTCTTGAAAGATTGGGGGTCTGCACGGAAAAGGCTTGGAGGCCAGTTCTCTGAGGCTGCCTTTGTTGCAGGAAATAAAA---------TGTGAATCTTTCCAGAGCC----AC-------AGTACTAGCATTTGGAGACCACTCTC----AGGGGCCTTTGGGCGTACGACTTTCGGGGCTCTGGTCCTCTGTTTCCGTATCCGTAGAATGGAGACGGCTACTCTGCGAGAAGCCCGAGGTGCGCAGGACCCAAGTGAGGAGCCGGCA-----ACCTGAAGTCCGCAGGATGAGGAGGGATCCGAAGGAGGCGGTGTGGAGCCTCAAGAGGACTGCCTTGGGGTGGGAAGAGGACAGCCCGGCACTGGCTGCGGGCCCAGGTGCTGTGATGGGTTTCGTGCGC--GGTGAGGACTGACAGCCTCTGCATCAGTGACCGGGCGAAGAGTGGGGCAGCTCGGACGGCGGTTGGGGAACGTTAGGGA--------GGTTGGGGCGCGGAC---------CACGGGG----TGAGC--GCCCAGGAAC--G--CC-GGACGCGCGCCTT-CACGCCCGGGTGACTGGCGGCGTTTTAGAAAAGCTGTATTTGAAAAGTAACCGAT-TGGGGTGAAGGTGGGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     281800 711 +   2037526 AGAGGTGCCAAATGCTGCCTTAGAAATCTGTAAGCCAGCTAAGAGTTCTGCAGTCTCAACT---AAACAAAACTTTTTTATTCCATTGGTTTGGGGTGTACTGTTCTCAGGGCTTTTGCCAACTGAATTGGTCT-GTGGTGTCTTGAAAGATTGGGGGTCTGCACGGAAAAGGCTTGGAGGCCAGTTCTCTGAGGCTGCCTTTGTTGCAGGAAATAAAA-----------TGAATCTTTCCAGAGCC----AC-------AGCACTAGCATTTGGAGACCACTCTC----AGGGGCTTTGGGGCGTACGACTTTCGGGGCTCTGGTCCTCTGTTTCCGTATCCGTAGAATGGAGACGGCTACTCTGTGAGAAGCCCGAGGTGCGCAGGACCCAAATGAGGAGCCGGCA-----ACCTGAAGTCCTCAGGATGAGGAGGGATCCGAAGGAGGCGGTGTGGAGACTCAAGAGGACCGCCTT-GGGTGGGAAGAGGACAGCCCGGCACTGGCTGCTGGCCCAGGTGCTGTGATGGGTTTCGTGCGC--AGAGAGGCCTGACAGCCTCTGCATCAGTGACCGGGCGAAGAGTGGGGCAGCTCGGACGGCGGTTGGGGAACGTTAGGGA--------GGTTGGGGCGCGGAC---------CACTGGG----TGAGC--GCCCAGGAAC--G--CC-GGACGCGCGCCTT-CACGCCCGGGTGACTGGCGGCGTTTTAGAAAAGCTGTATTTGAAAAGCAACCGAT-TGGGGTGAAGGC-GGGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74948790 715 + 122973662 AGAGGTGCCAAATGCTGCCTTAGAAATCTGTAAGCCAGCTAAGAGTTCTGCAGTCTCAACT---AAACAAAACTTTTTTATTCCATTGGTTTGGGGTGTACTGTTCTTAGAGCTTTTGCCAACTGAATTGGTCT-GTGGTGTCTTGAAGGATTGGGGGTCTGCACGGAAAAAGCTTGGAGGCCAGTTCTCTGAGGCTGCCTTTGTTGCAGGAAATAAAA---------TGTAAATCTTTCCAGAGCC----AC-------AGTACTAGCATTTGGAGACCACTCTC----AGGGGCCTTTGGGCTTACGACTTTCGGGGCTCTGATCCTCTCTTTCCCTATCGGTAGAATGGAGACGGCTACTCTGTGAGAAGCCCGAGGAGCGCAGGACCCAAGTGAGGAGCCGGCA-----ACCTGAAGTCCGCAGGCTGAGGAGGGATCCGAAGGAGGCGGTGTGGAGACTCGAGAGGACCGCCTTGGGGTGGGAAGAGGACAGCCCGGCACTGTCTACGGGCCCTGGTGCTGTGATGGGCTTGGTGTGC--AGAGAGGCCTGACAGCCTCTGCATCAGTGACCCGGCGAAGAGTGGGGCAGCTCGGACGGCGGTTGGGGAACGTTAGGAA--------GGTTGGGGCGCGGAC---------CACGGGG----TGAGC--GCCCAGGAAC--G--CC-GGACGCGCGCCCT-CACGCCCGGATGACTGGCGGCGTTTTAGAAAAGCTGTATTTGAAAAGCAACCGAT-TGGGGTGAAGGTGAGGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30826753 691 + 172585720 AGAGGTGCCAAATGCTGCCTTAGAAATCTGTAAGCCAGCTAAGAGTTCTGCAGGCTCAACT--------AAACTTTTTTATTCCATTGGTTTGGGGTGTACTGTTCTTAGAGCTTTTGCCAACTGAATTGATCT-ATGGTGACTTGAAGGATTGGGGGTCTGCACGGAAAAGGCTTGGAGGCCAGTTCTCTGAGGCTGCCTTTGTTGCAGGAAATAAAA---------TGTAAATCTTTCCAGAGCC----AC-------AGTACTAGCATTTGGAGACCACTCTC----AGGGG-------------------CGGGGctctgggcctctgtttccctatccgtagaatggagaCGGCTACTCTGTGAGAAGCCCCAGGTGCGCAGGACCCAAGTGAGGAGCCGGCG-----ACCTGACGTCCGCGGGCTGAGGAGGGATCCGAAGGAGGCGGTGTGGAGACTCGAGAGGACTGCCTTGGGGTGGGAAGAGGACAGCCCGGCACTGGCTGCAGGCCCAGGTGCTGTGATGGGCTTCGTACGC--AGAGAGGCCTGACAGCCTCTGCATCAGCGACCGGGAGAAGAGTGGGGCAGCTCGGACGGCAGTTGGGGAAGGTTAGGTA--------GGTTGCGGCGCGGAC---------CACGCGG----TGAGC--GCCCAGGAAC--G--CC-GGAAGCGCGCCCC-CACGCCCAGGTGACTGGCGGCGTTTTAGAAAAGCTGTATTTGAAGAGCAATCGAT-TGGGGTGAAGGTGGGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30116243 691 - 170955103 AGAGGTGCCAAATGCTGCCTTAGAAATCTGTAAGCCAGCTAAGAGTTCTGCAGGCTCAACT--------AAACTTTTTTATTCCATTGGTTTGGGGTGTACTGTTCTTAGAGCTTTTGCCAACTGAATTGATCT-GTGGTGACTTGAAGGATTGGGGGTCTGCACGGAAAAGGCTTGGAGGCCAGTTCTCTGAGGCTGCCTTTTTTGCAGGAAATAAAA---------TGTAAATCTTTCCATAGCC----AC-------AGTACTAGCATTTGGAGACCACTCTC----AGGGG-------------------CGGGGctctgggcctctgtttccctatccgtagaatggagaCGGCTACTCTGTGAGAAGCCCCAGGTGCGCAGGACCCAAGTGAGGAGCCGGCG-----ACCTGACTTCCGCGGGCTGAGGAGGGATCCGAAGGAGGCGGTGTGGAGACTCGAGAGGACTGCCTTGGGGTGGGAAGAGGACAGCCCGGCACTGGCTGCAGGCCCAGGTGCTGTGATGGGCTTCGTACGC--AGAGAGGCCTGACAGCCTCTGCATCAGCGACCGGGCGAAGAGTGGGGCAGCTCGGACGGCAGTTGGGGAAGGTTAGGTA--------GGTTGCGGCGCGGAC---------CACGCGG----TGAGC--GCCCAGGAAC--G--CC-GGAAGCGCGCCCC-CACGCCCAGGTGACTGGCGGCGTTTTAGAAAAGCTGTATTTGAAGAGCAACCGAT-TGGGGTGAAGGTGGGGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     365149 693 +   1495729 AGAGGTGCCAAATGCTGCCTTAGAAATCTGTAAGCCAGCTAAGAGTTCTGCAGGCTCAACT--------AAACTTTTTTATTCCATTGGTTTGGGGTGTACTGTTCTTAGAGCTTTTGCCAACTGAATTGATCT-GTGGTGACTTGAAGGATTGGGGGTCTGCACGGAAAAGGCTTGGAGGCCAGTTCTCTGAGGCTGCCTTTTTTGCAGGAAATAAAA---------TGTAAATCTTTCCATAGCC----AC-------AGTACTAGCATTTGGAGACCACTCTC----AGGGG-------------------TGGGGctctgggcctctgtttccctatccgtagaatggagaCGGCTACTCTGTGAGAAGCCCCAGGTGCGCAGGACCCAAGTGAGGAGCCGGCG-----ACCTGACTTCCGCGGGCTGAGGAGGGATCCGAAGGAGGCGGTGTGGAGACTCGAGAGGACTGCCTTGGGGTGGGAAGAGGACAGGCCGGCACTGGCTGCAGGCCCAGGTGCTGTGATGGGCTTCGTACGCAGAGAGAGGCCTGACAGCCTCTGCATCAGCGACCGGGCGAAGAGTAGGATAGCTCGGACGGCAGTTGGGGAAGGTTAGGTA--------GGTTGCGGCGCGGAC---------CACGCGG----TGAGC--TCCCAGGAAC--G--CC-GGAAGCGCGCCCC-CACCCCCAGGTGACTGGCGGCGTTTTAGAAAAGCTGTATTTGAAGAGCAACCGAT-TGGGATGAAGGTGGGGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     467257 691 -    863181 AGAGGTGCCAAATGCTGCCTTAGAAATCTGTAAGCCAGCTAAGAGTTCTGCAGGCTCAACT--------AAACTTTTTTATTCCATTGGTTTGGGGTGTACTGTTCTTAGAGCTTTTGCCAACTGAATTGATCT-GTAGTGACTTGAAGGATTGGGGGTCTGCACGGAAAAGGCTTGGAGGCCAGTTCTCTGAGGCAGCCTTTGTTGCAGGAAATAAAA---------TGTAAATCTTTCCAGAGCC----AC-------AGTACTAGCATTTGGAGACCACTCTC----AGGGG-------------------CGGGGctctgggcctctgtttccctatccgtagaatggagaCGGCTACTCTGTGAGAAGCCGGAGGTGCGCAGGATCCAAGTGAGGAGCCGGCG-----ACCTGACGTCCGCAGGCTGAGCAGGGATCCGAAGAAGGCGGTGTGGAGACTCGAGAGGACCGCCTTGGGGTGGGAAGAGGACAGCCCGGCACTGGCTGCAGGCCCAGGTGCTGTGATGGGCTTCGTACGT--AGAGAGGCCTGACAGCCTCTGCATCAGCGACCGGGCGAAGAGTTGGGCAGCTCGGACGGCAGTTGGGGAACGTTAGGTA--------GGTTGCGGCGCGGAC---------CACGCGG----TGAGC--GCCCAGGAAC--G--CC-GGAAGCGCGCCCC-CACGCCCAGGTGACTGGCGGCGTTTTAGAAAAGCTGTATTTGAAAAGCAACCGAT-TGGAGTGAAGGTGAGGGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29616905 691 -  71996105 AGAGGTGCCAAATGCTGCCTTAGAAATCTGTAAGCCAGCTAAGAGTTCTGCAGGCTCAAGT--------AAACTTTTTTATTCCATTGGTTTGGGGTGTACTGTTCTTAGAGCTTTTGCCAACTGAATTGATCT-GTAGTGACTTGAAGGATTAGGGGTCTGCACGGAAAAGGCTCGGAGGCCAGTTCTCTGAGGCTGCCTTTGTTGCAGGAAATAAAA---------TGTAAATCTTTCCAGAGCC----AC-------AGTACTAGCATTTGGAGACCACTCTC----AGGGG-------------------CGGGGctctgggcctctgtttccctatccgtagaatggagaCGGCTACTCCGTGAGAAGCCCGAGGTGCGCAGGACCCAAGTGAGGAGCCGACG-----ACCTGACGTCCGCAGGCTGAGCAGGGATCCGAAGGAGGCGGTGTAGAGACTCGAGAGGACCGCCTTGGGGTGGGAAGAGGACAGCCCGGCACTGGCTGCAGGCCCAGGTGCTGTGATGGGGTTCGTACAC--AGAGAGGCCTGACAGCCTCTGCATCAGCGACCGGGCGAAGAGTGGGGCAGCTCGGACTGCAGTTGGGGAAGGTTAGGTA--------GGTTGCGGCGCGGAC---------CACGCGG----TGAGC--GCCCAGGAAC--G--CC-GGAAGCGCGCCCC-CACGCCCAGGTGACTGGCGGCGTTTTAGAAAAGCTGTATCTGGAGAGCAACCGAT-TGGGGTGAAGGTGGGGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     326960 693 -    735854 AGAGGTGCCAAATGCTGCCTTAGAAATCTGTAAGCCAGCTAAGAGTTCTGCAGGCTCAACT--------AAACTTTTTTATTCCATTGGTTTGGGATGTACTGTTCTTAGAGCTTTTGCCAACTGAATTGATCT-GTGGTGACTTGAAGGATTGGGGGTCTGCACAGAAAAGGCTTGGAGGCCAGTTCTCTGAGGCAGCCTTTGTTGCAGGAAATAAAA---------TGTAAATCTTTCCATAGCC----AC-------AGTACTAGCATTTGGAGACCACTCTC----AGGGG-------------------TGGGGctctgggcctctgtttccctatccgtagaatggagaCGGCTACTCTGTGAGAAGCCCCAGGTGCGCAGGACCCAAGTGAGGAGCCGGCG-----ACCTGACTTCCGCGGGCTGAGGAGGAATCCGAAGGAGGCGGTGTGGAGACTCGAGAGGACTGCCTTGGGGTGGGAAGAGGACAGGCCGGCACTGGCTGCAGGCCCAGGTGCTGTGATGGGCTTCGTACGCAGAGAGAGGCCTGACAGCCTCTGCATCAGCGACCGGGCGAAGAGTGGGGCAGCTCGGACGGCAGTTGGGGAACGTTAGGTA--------GGTTGCAGCGCGGAC---------CACGCGG----TCAGC--GCCCAGGAAC--G--CC-GGAAGCGCGCCCC-CACGCCCAGGTGACTGGCGGCGTTTTAGAAAAGCTGTATTTGAAAAGCAACCGAT-TGGAGTGAAGGTGAGGGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     254476 678 -   1829203 AGAGGTGCCAAATGCTGCCTTAGAAATCTGCAAGCCAGCTAAGAGTTCTGCAGGCTCAACT--------AAACTTTTTTATTCCATTGGTTTGGGGTGTACTGTTCTTAGAGCTTTTGCCAACTGAATTGATCT-GTGGTGACTTGAAGGATTGGGGGTCTGCACGGAAAAGGCTTGGAGGCCAGTTCTCTGTGGCTGCCTTTGTTGCAGGAAATAAAA---------TGTAAATCTTTCCAGAGCC----GC-------AGTACTAGCATTTGGAGGCCACTCTC----AGGGG-------------------CGGGGctctgggcctctgtttccctatccgtagaatggagacaGCTACTCTGTGAGAAGCCTGAGGTGTGCAGGACCCAAGTGATGAGCCGGCG-----ACCTGGCGTCCGCAGGCTGAGGAGGGATCCGAAGGAGGCGGTGTGGAGACTCGAGAGGACCGCCTTGG---GGGAAGGGGACAGCCTGGCACTGGCTGCAGGCCCAGGTGCTGTGATGGGCTTCGTACGC--AGAGAGGCCTGTCAGCCTCTGCATCAGCGACCGGGCGAAGAGTGGGGCAGCTCGGACGGCA----------GTTACGTA--------GGTTGCGGCGCGGAC---------CACGCGG----TGAGC--GCCCAGGAAC--G--CC-GGAAGCGCGCCCC-TACGCCCAGGTGACTGGAGGCGTTTTAGAAAAGCTGTATTTGAAAAGCAACCGAT-TGGAGTGAAGGTGGGAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30449050 685 + 171630274 AGAGGTGCCAAACGCTACCTTTAAATTCTGTAAGCCAGCTAAGAGTTCTGCAGGCTCAACT---AAACAAAACTTTTTTATTGCATTGGTTT-GGGAGTACTGTTCTTAGAGCTTTTGCTA--------------GTGGTGACTAGAAGGATTGGGGGTCTGCACGGAAAAGGCCTGGAGGCCAGTTGTTTGAGGCTGC--CTGTTGCAGGAAATAAAATGCAAATCATGTAAACCCTTCCAGAGCC----AC-------AGAACTAGCATTTGGAGACCACTCTCAGGGAGGGG-TCTTTGGGGTACGACTTTCAGGGctctgggcctctatttccctattcgtagaatggagacaGCTACTCTGTGAGAAGCCAGAGATGCGTAGGACCCAAGTGAGGAGCCAGCG-----A--------CCGCAGGGTGAGGAGGGACCCGAAGGAGGCGGTGCCGAGACTCGGGAAAACCGCCTAGGGGTGGGAAGAGGACACCCCGGCCCTGGCTGCAGGCCCAGGTGCTGTGATGGGCTTCGTGCGC-------------------TCCTCATCAGCGCCCGTGCGAAGAGTGAGGCAGCTCGGGCGGCGGTTGCGGAATGTTAGGGA--------GGTTGGGGCGCGGAC---------CACCGGG----TGAGC--GCCCAGGAAC--G--CC-TGACGGGAAATCT-CACTCCCAAGTGACTGGCGGCGTTTTAGAAAAGTTATATTTCAAAAGCAACTGAT-TGGGGTGAAGGTGGGGG-
i calJac3.chr4             I 510 I 1
s saiBol1.JH378341           260711 683 +    515838 AGAGGTGCCACACGCTACCTTTAAAATCTGTAAGCCAGCTAAGAGTTCTGCAGGCTC-ACT---AAACAAAACTTTTTTATTCCATTGGTTTGGGGAGTACTGTTCTTAGAGCTTTTGCCA--------------GTGGTGACTAGAAGGATTGGGGGTCTGCACGGAAAAGGCGTGGAGGCCAGTTCTCGGAGGCTGCCTCTGTTGCAGGAAATAAAATGCAAATTATGCAAATCCTTCCAGAGCC----AC-------AGAACTAGCATTTGGAGACCACTCTC----AGGGG-TCTTTGGGGTACGATTTTCAGGGctctgggcctctgtttccctatccgtagaatggagaCCGCTACTCTGTGAGAAGCCAGAGATGCGCAGGACCCAGGTGAGGAGGCGGCG-----A--------CCGCAGGGTGAGGGGGGACCCGAAGGAGGCGGTGCCGAGACTCGGGAGAACCGCCTAGGGGTGGGAAGAGGACACCCCGGCCCTGGCTGCGGGCCCAGGTGCTGTGATGGGCTTCGTGCGC-------------------TCCGCATCAGTGCCGGTGCGAAGAGTCGGGCAGCTCGGGCGGCGGTTGCGGAATGCTAGGGA--------GGTTGGGGCGCGGAC---------CACCGGG----TGAGC--CCCCAGGAAC--G--CC-TGACGCGCTCTCT-CACACCCGAGTGACTGGCGGCGTTTTAGAAAAGTTATATTTGAAAAGCAGCCGAT-TGGGGTGAAGGTGGGGG-
i saiBol1.JH378341         I 516 I 1
s cebCap1.NW_016107755v1     889721 684 -   1771730 AGAGGTGCCAAACGCTACCTTTAAAATCTGTAAGGCAGCTAAGAGTTCTGCAGGCTCAGCT---AAACAAAACTTTTTTATTCCATTGGTTTGGGGAGCACCGTTCTTAGAGCTTTTGCTA--------------GTGGTGACTAGAAGGACCGGGGGTCTGCACGGAAAAGGCGTGGAGGCCAGTTCCCGGAGGCCGCCTCTGTTGCGGGAAATAAAATGCAAATCATGCAAATCCTGCCAGAGCC----AC-------AGAACTAGCATTTGGAGACCACTATC----AGGGG-TCTTTGGGGTACGACTTTCAGGGCTCTGGGCCTCTGTTTCCCTGTGCGTAGAATGGAGACGGCTACTCTGTGAGAAGCCAGAGACGCACAGGACCCAGGTGAGGAGCCGGCG-----A--------CCGCAGGGTGTGGGGGGACCCGAAGGAGGCGGTGCCGAGACTCGAGAGAACCGCCTAGGGGTGGGAAGAGGACACCCCGGCCCTGGCTGCGGGCCCAGGTACTGTGATGGGCTTCGTGCGC-------------------TCCGCATCAGTGCCCCTGCGAAGAGTGAGGCAGCTCGGGCGGCGGTTTCGGAATGTTAGGGA--------GGTTGGGGCGCGGAC---------CACCGGG----TGAGC--ACCCAGGAAA--G--CC-GGACGCGAGATCT-CACGCCCGAGTGACTGGCGGCGTTTTAGAAAAGTGATATTTGAAAAGCAACCGAT-TGGGGTGAAGGTGGGGG-
i cebCap1.NW_016107755v1   I 507 I 371
s aotNan1.NW_018496901v1      65564 683 -    486031 AGAGGTGCCAAACGCTACCTTTAAAATCTGTAAGGCAGCTAAGAGTTCTGCAGGCTCAACT---AAACAAAACTTTTTTATTCCATTGGTTTGGGGAGTACTGTTCTTAGAACTTTTGCTA--------------GTGGTGTCTAGAAGGATTGGGGGTCTGCACGGAAAAGGC-TGGAGGCCAGTTCCCTGAGGCTGCCTCTGTTGCAGGAAATAAAATGCAAATCATGCAAATCCTTCCAGAGCC----AC-------AGAACTAGCATTTGGAGACCACTCTC----AGGGG-TCTTTGGGGTACGACTTTCAGGGctctgggcctctgtttccctatccgtagaatggagaCGGCTACTCTGTGAGAAGCCAGAGATGCGCAGGACCCAGATGAGGAGCCGGCG-----A--------CCGCAGGGTGAGGAGGGACCCGAAGGAGGCGGTGCCGAGACTCGAGAGAACCGCCTAGGGGTGGGAAGACGACACCCCGGCCCTGGCTGCGGGCCCAGGTGCTGTGGCGGGCTTTGTGCGC-------------------TCCGCACCAGTGCCGGTGCGAAGAGTGGGGCAGCTCGGGCGGCGGTTGCAGAATGTTAGGGA--------GGTTGGGGCGCGGAC---------CACCAGG----TGAGC--GCCCAGGAAA--G--CC-GGATGCGCGATCT-CACACCCGAGTGACTGGCGGCGTTTTAGAAAAGTTATATTTGAAAAGCAACCGAT-TGGGGTGAAGGTGGGGG-
i aotNan1.NW_018496901v1   I 507 I 347
s otoGar3.GL873550           299359 639 +  18854210 --------------------CAGAAAT--------------AGAGT-------------CT---AAACAAAGCTTTTTCATTCCATTGGTTTGGGGTAAACTCTACCCGGAAATTTTGCTAAATGGATTGGTAT-GGGGTGACTTGAAGGATTGGAGGTCTGCAGGGAAAAGGTTTGGAGGCCAGTTTTCTGAGTCTACCAC--TTGTAGAAAATCAAA---------TACAAATCTTTCCAGAGTC----ACTTACAAAAGTACTTGGTTTCGGTGACCACTTTC----AGGGC--CTTTGAGGTCTCCCTTTCAGGGTTCTGGGCATCAGTTAC------AGTAGAATGGAGATGGCCACTCTTTAAGAAGTCGAAGGCGCGGAGGACCCAAAT---GAGCTGGCA-----CCCACAAGTCCTTTGGGGCAGGAGAGGCCAGAAGGAAGCTGCAATGAGACTCCACAGACTAGTCCGGTGGTAGAAAGAGGACAATCCGGCCCTGGCTGCGGGCTCAAGAGCTGTGATCAGCTTAGTGCCC--TGAGT------------------------ACCAAGCAAAGAGTGGGGCATCTTGGGAGGCGGTTAGAGACAGTTGGGAT--------GATTGCCACGCTGAC---------CACGCGG----TGAGCGTGCTCTGGAACTAG--CCGGGGCACGTGCCCC-TGGGCTCAAGCGACTGATGGGCTTTTAG-AACGCGGCATTTGAAAAGCAACCGATGCAGGGTAGAGGAGG----
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26333377 556 +  26524999 AGTGGTGCTA-ATGATGCATTAAAAACCTGTAAGTGAGCAAAGGTTTCCGCAGGCTTCACCTGCAGACAGAGCTGCTTCA-CCCATGGGTCC-GGCTGTCCAGTCC--AGAGTCGTGGCTAGGTGCATCCGTAC-G-GGTGACTTCAAGGGCTGAGGGTC--CACGGGGAAGGGCCGAGG--CAGGTTTCCGAGACTGCCTGTCTTGTGGGA-----------------------TCTTCCAGGGTC----AC----------------TTATGGAACCCGCT-TC----AGTGA-------------CCCATTCAGGGCCCTGGG-GTGTGTCACTCCATCCGCAGGATGGAGGTGGCTGCCCTGC----AGGTCCAGGTTCGCAGGACCCAAATGCGCTGTGGGCGTGGACACTTGG------------GGGGGTGGTCCCCTCAGTGGCGGAGTGGAGGGT---------------------GGCCGAGG-------GGCCCCGGCTGGGTGACTAGCTGTCGT-------TGGGTGGTC--------------------------------------------------------GGTGGCCGTTG-GGAACGTTGGGGC--------GGTTGGGGCGCGGGCAGCAGGGGGCGTGGGG----GACGC--GCTCGGGAAG--GATCC-GAGCGCGCACCCTCCGCGCTTGGGGGACCGAGGGTGCTTTAGAAAA---------------CAGCCGGT-T----TGGAAGC------
i canFam3.chr35            I 4 C 0
s dasNov3.JH567297            10593 623 +     53444 CGAGGTGCTGAATGATGCATTAAAAACCTGTAGGGCCGCG----------------CGGCT--------------------CCCTTCCCTCCGGGTTGCCCTCTCCCTAGGGCGTCTCCTAGGTGGATTGCTATAGCGGTGCCTGGAAGGGCCGCGGGTGC---TGGGGGGCGCTTGGAGGCTGG-TGTCCCCGGCTGC-TCTGTTGCAGGAAACCAGG---------TGTGAATCTTTTCAAGACCGTTTAC-------AGAACTTGCTTTTGGCGACCACCCTC----AGGGG------------------CTGTGGGTCGAGGCCTCTGTTGC---GTCGGAGGAGTGG------------TGCAGGGGGGCGGTGACCGCCAGAGCCGAGGTAGGGGCGCCCCG-----ACTTGACGTCCGCGGGGGCAGGGGCG-CCGGGAGGAGGCGGCGCGGAGACCCGG----------CGGTGGCGGGAAGGGG---GTCCGGCCCGGGCTGCAGGCTCCACCGGGGGAACCAGGTCAGTGCCC--GGAGCGGCGAggcggcctcccccgcgcgg--cgggcggccAGTggggcggctggg--ggcggttgggggccgttgggggcggggggcgttgggggcgttggg---------ggcggtGGCACCGCGC--GCTCAGAGAG--G--CG-GGGCTCGCGTGCC-CGCCCCACAATGA-----GGCCGTT---AAAAACCGCATTTGAAAAGCAGCCTCT-TTGGGG------------
i dasNov3.JH567297         I 2 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     151649 738 -   1411461 I

a score=323653.000000
s hg38.chr6_GL000254v2_alt  1471647 42 +   4827813 AGC-GGAATCCTGA-TTACACTGTCCC-AATTTCAGTTGAGGTGG
s panTro5.chr6             30341106 42 + 175400573 AGC-GGAATCCTGA-TTATACTGTCCC-AGTTTCAGTTGAGGTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30575461 43 + 173848474 AGC-GGAATCCTGA-TTATACTGTCCCAAGTTTCAGTTGAGGTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     282511 42 +   2037526 AGC-GGAATCCTGA-TTATACTGTCCC-AATTTCAGTTGAGGTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74949505 42 + 122973662 AGC-GGAATCCTGA-TTATACTGTCCC-AATTTCAGTTGAGGTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30827444 43 + 172585720 AGCGGGAATCCTGA-TTATACTGTCCC-AATTTCAGTTGAGGTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30116934 43 - 170955103 AGCGGGAATCCTGA-TTATACTGTCCC-AATTTCAGTTGAGGTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     365842 43 +   1495729 AGCGGGAATCCTCA-TTATACTGTCCC-AATTTCAGTTGAGGTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     467948 43 -    863181 AGAGGGAATCCTGA-TTATACTGTCCC-AATTTCAGTTGAGGTGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29617596 43 -  71996105 AGCGGGAATCCTGA-TTATACTGTCCC-AATTTCAGTTGAGGTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     327653 43 -    735854 AGAGGGAATCCTGA-TTATACTGTCCC-AATTTCAGTTGAGGTGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     255154 43 -   1829203 AGCGGGAATCCTGA-TTATACTGGCCC-AATTTCAGTTGAGGTGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30449736 38 + 171630274 AGCGGGAATCCTGA-TTCTATTGTTCC-AAT-----TTGAGGTGG
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           261395 37 +    515838 AG-GGGAATCCTGA-TCCCACTGTCCC-AAT-----TTGAGGTGG
i saiBol1.JH378341         I 1 C 0
s otoGar3.GL873550           299998 40 +  18854210 ---AGTGATCCTTA-CTATATTGCCCC-AATATCGTTTGAGGTGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26333933 37 +  26524999 ------AATCTTGG-TTATACTGCCCG-GCGTTCAGCGGTTGTGG
i canFam3.chr35            C 0 I 2948
s dasNov3.JH567297            11216 40 +     53444 ----GTCACCCTGATTTCTGTTGATCC-TCTTTCAGCAAACGGGT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     151649 738 -   1411461 I
e aotNan1.NW_018496901v1      66247 347 -    486031 I
e cebCap1.NW_016107755v1     890405 371 -   1771730 I

a score=56998.000000
s hg38.chr6_GL000254v2_alt  1471689 6 +   4827813 GCTTTT
s panTro5.chr6             30341148 6 + 175400573 GCTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30575504 6 + 173848474 GCTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     282553 6 +   2037526 GCTTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74949547 6 + 122973662 GCTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30827487 6 + 172585720 GCTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30116977 6 - 170955103 GCTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     365885 6 +   1495729 GCTTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     467991 6 -    863181 GCTTTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29617639 6 -  71996105 GCTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     327696 6 -    735854 GCTTTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     255197 6 -   1829203 GCTTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30449774 6 + 171630274 Gttttt
i calJac3.chr4             C 0 I 290
s saiBol1.JH378341           261432 6 +    515838 GCTAtt
i saiBol1.JH378341         C 0 I 299
s otoGar3.GL873550           300038 6 +  18854210 ACCTTT
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            11256 6 +     53444 GTTTTT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     151649 738 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e aotNan1.NW_018496901v1      66247 347 -    486031 I
e cebCap1.NW_016107755v1     890405 371 -   1771730 I

a score=8281.000000
s hg38.chr6_GL000254v2_alt  1471695 1 +   4827813 A
s panTro5.chr6             30341154 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30575510 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     282559 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74949553 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30827493 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30116983 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     365891 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     467997 1 -    863181 A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29617645 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     327702 1 -    735854 A
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     255203 1 -   1829203 A
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30450070 1 + 171630274 A
i calJac3.chr4             I 290 C 0
s saiBol1.JH378341           261737 1 +    515838 a
i saiBol1.JH378341         I 299 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297            11262 0 +     53444 C
e proCoq1.NW_012149775v1     151649 738 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           300044 0 +  18854210 C
e aotNan1.NW_018496901v1      66247 347 -    486031 I
e cebCap1.NW_016107755v1     890405 371 -   1771730 I

a score=140425.000000
s hg38.chr6_GL000254v2_alt  1471696 17 +   4827813 AAAGAAATCCCAATTCA
s panTro5.chr6             30341155 17 + 175400573 AAAGAAATCCCAACTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30575511 17 + 173848474 AAAGAAATCCCAACTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     282560 17 +   2037526 AAAGAAATCCCAATTGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74949554 17 + 122973662 AAAGAAATCCCAACTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30827494 17 + 172585720 AAAGAAATCCCAACTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30116984 17 - 170955103 AAAGAAATCCCAACTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     365892 17 +   1495729 AAAGAAATCCCAACTCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     467998 17 -    863181 AAAGAAATCCCAACTCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29617646 17 -  71996105 AAAGAAATCCCAACTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     327703 17 -    735854 AAAGAAATCCCAACTCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     255204 17 -   1829203 AAAGAAACCCCAACTCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30450071 17 + 171630274 AAAAAAATCCCAAAGCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           261738 17 +    515838 aaaaaaaTCCCAAAGCG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496901v1      66594 17 -    486031 AAAAAAATCCCAAAGCG
i aotNan1.NW_018496901v1   I 347 C 0
s otoGar3.GL873550           300044 17 +  18854210 TCTTAAATTTTAAAGCA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            11262 11 +     53444 ------CTCCCAAAGCA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     151649 738 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e cebCap1.NW_016107755v1     890405 371 -   1771730 I

a score=373630.000000
s hg38.chr6_GL000254v2_alt  1471713 36 +   4827813 CACATTCGATCAGGTTAGTTACAAGAAAGGCTGGGA
s panTro5.chr6             30341172 36 + 175400573 CACATTCGATCAGGTTAGTTACAAGAAAGGCTGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30575528 36 + 173848474 CACATTCGATCAGGTTAGTTACAAGAAAGGCTGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     282577 36 +   2037526 CACATTCGATCAGGTTAGTTACAAGAAAGGCTGGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74949571 36 + 122973662 CACATTCGATCAGGTTAGTTACAAGAAACGCTGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30827511 36 + 172585720 CACATTCGATCAGGTTAGTTACAAGAAAGGCTGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30117001 36 - 170955103 CACATTCGATCAGGTTAGTTACAAGAAAGGCTGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     365909 36 +   1495729 CACATTCGATCAGGTTAGTTACAAGAAAGGCTGGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     468015 36 -    863181 CACATTCGATCAGGTTAGTTACAAGAAAGGCTGGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29617663 36 -  71996105 CACATTCGATCAGGTTAGTTACAAGAAAGGCTGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     327720 36 -    735854 CACATTCGATCAGGTTAGTTACAAGAAAGGCTGGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     255221 36 -   1829203 CACATTCGATCAGGTTAGTTACAAGAAAGGCTGGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30450088 34 + 171630274 CACATTCGATCAGGTTAGTTACAAGAAAGGCT--GA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           261755 34 +    515838 CACATTCGATCAGGATAGTTACAAGAAAGGCT--GA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     890776 34 -   1771730 CACATTTGATCAAGTTAGTTACAAGAAAGGCT--GA
i cebCap1.NW_016107755v1   I 371 C 0
s aotNan1.NW_018496901v1      66611 34 -    486031 CACATTCGGTCAGGTGAGTTACAAGAAAGACT--GA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           300061 34 +  18854210 AATGTTCGATCATGAAAGTTAAACAAAAGGTTGG--
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            11273 32 +     53444 CACATATGATCACGGAAACG--GAAAAAGGGTGG--
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     151649 738 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=444553.000000
s hg38.chr6_GL000254v2_alt  1471749 35 +   4827813 GGAGGTGGGGCTGGAAACACCAG-------AGGGCCCAGATG
s panTro5.chr6             30341208 35 + 175400573 GGAGGTGGGGCTGGAAACACCAG-------AGGGCCCAGATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30575564 35 + 173848474 GGAGGTGGGGCTGGAAACACCAG-------AGGGCCCAGATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     282613 35 +   2037526 GGAGGTGGGGCTGGAAACAACAG-------AGGGCCCAGATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74949607 35 + 122973662 GGAGGTGGGGCTGGAAACACCCG-------AGGGCCCAGATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30827547 35 + 172585720 GGAGGTGGGGCTGGAAACACCCG-------AGGGCCCAGATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30117037 35 - 170955103 GGAGGTGGGGCTGGAAACACCCG-------AGGGCCCAGATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     365945 35 +   1495729 GGAGGTGGGGCTGGAAACACCCG-------AGGGCCCAGATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     468051 42 -    863181 GGAGGTGGGGCTGGAAACACCCGAGGGCCCAGGGCCCAGATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29617699 35 -  71996105 GGAGGTGGGGCTGGAAACACCCG-------AGGGCCCAGATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     327756 35 -    735854 GGAGGTGGGGCTGGAAACACCCG-------AGGGCCCAGATG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     255257 35 -   1829203 GGAGGTGGGGCTGGAAACACCCG-------AGGGCCCAGATG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30450122 35 + 171630274 GGAGGTGGGGCTGGAAACACCCG-------AGGACGCAGATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           261789 35 +    515838 GGAGGTGGGGCTGGTAACACCCG-------AGGACGCAGATG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     890810 35 -   1771730 GGAGGTGGGGCTGGAAACACCCA-------AGGAGGCAGATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      66645 35 -    486031 GGAGGTGGGGCTGGAAACACCCG-------AGGACGCAGATG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     152387 35 -   1411461 GGAGGTGGGGCTGGAAACGCTGG-------AGGGCTCAGATG
i proCoq1.NW_012149775v1   I 738 I 1536
s otoGar3.GL873550           300095 35 +  18854210 GGAAGTGGGGTTGGAAACACCCC-------AGGGCTCAGATG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            11305 17 +     53444 GGAGGT-GGGCTGGAAAC------------------------
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=487730.000000
s hg38.chr6_GL000254v2_alt  1471784 46 +   4827813 TCCGTTGGCGACGGTCTTCTGCAAACGACAGAGCGCAAGCCTTG-CC
s panTro5.chr6             30341243 46 + 175400573 TCAGTTGGCAACGGTCTTCAGCAAACGACAGAGCGCAAGCCTTG-CC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30575599 46 + 173848474 TCAGTTGGCAACGGTCTTCTGCAAACGACAGAGCGCAAGCCTTG-CC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     282648 46 +   2037526 TCAGTTGGCAACGGTCTTCTGCAAACGACAGAGCGCAAGCCTTG-CC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74949642 46 + 122973662 TCAGTTGGCAACGGTTTTCTGCAAACCACAGAGCGCAAGCCTTG-CC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30827582 47 + 172585720 CCGGTTGGCAACGGTTTTCTGCAAACGACAGAGCGCAAGCCTTGCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30117072 47 - 170955103 CCGGTTGGCAACGGTTTTCTGCAAACGACAGAGCGCAAGCCTTGCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     365980 47 +   1495729 CCGGTTGGCAACGGTTTTCTGCAAACGACAGAGCGCAAGCCTTGCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     468093 47 -    863181 CCGGTTGGCAACGGTTTTCTGCAAACGACAGAGCGCAAGCCTTGCCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29617734 47 -  71996105 CCGGTTGGCAACGGTTTTCTGCAAACGACAGAGCGCAAGCCTTGCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     327791 47 -    735854 CCGGTTGGCAACGGTTTTCTGCAAACGACAGAGCGCAAGCCTTGCCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     255292 47 -   1829203 CCGGTTGGCAACGGTTTTCTGCAAACGACAGAACGCAAGCCTTGCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30450157 46 + 171630274 CCAATTGGCGACAGTTTTCTGCAAACGACACAGCGCAAGCCTTG-CC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           261824 46 +    515838 CTAGTTGGCAACAGTTTTCTGCAAACGACAGAGCTCAAGCCTTG-CC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     890845 46 -   1771730 CCAATTGGCGACGGTTTTCTGCAAACAACAGAGCGCAAGCCTTG-CC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      66680 46 -    486031 CCAATTGGCGACAGTTTTCTGCAAACGACAGAGCGCAAGCCTTG-CC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           300130 43 +  18854210 ---CGTGTTGAAAGTTTCCAGCAAACAACCGAGTGCAAGCCTTG-CC
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            11322 31 +     53444 ----TTGGC-----------GCAGACAGCACCGCTCAGGCCTCG-CC
i dasNov3.JH567297         C 0 I 513
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     152422 1536 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=3483243.000000
s hg38.chr6_GL000254v2_alt  1471830 356 +   4827813 CCTGGAATTCTAGAGCCGCCGCAAAGATAGGAACTCAAAACGACCCGAGC-CCCGGAGCCGCAG-CCC--------------CTCGGGACGGTCACG----------AGCAGAG-CTCCCAAGGG----GACCGCTGGGGACT-------------GGGCGGGGGCTCTGCTTCTCACCTGTTCCTTCTCTATCCACTGAGCCCTGACACGTAGGACCAGCGCTACTAACAGACTTGTTTTCCGGTTCAGCTCCCCTTAGGGCTCCTGTTGGAAACCGACCCTATCTGGGGAGCCTGTCTGGGCCACTCCCATTGCCGGAGAACTCTCCTG-GGG----CGGGGAGATGGCccaggtttgtggggcttgaaagcttacacagtgttgtgtcttttcaagaaaaag
s panTro5.chr6             30341289 356 + 175400573 CCTGGAATTCTGGAGCCGCCGCAAAGATAGGAACTCAAAACGACCCGAGC-CCCGGAGCCGCAG-CCC--------------CTCGGGACGGTCACG----------AGCAGAG-CTTCCAAGGG----GACCGCTGGGGACT-------------GGGCGGGGGCTCTGCTTCTCACCTGTTCCTTCTCTATCCACTGAGCCCTGACACGTAGGACCAGCGCTACTAACAGACTTGTTTTCCGGTTCAGCTCCCCTTAGGGCTCCTGTTGGAAACCGGGCCTATCTGGGGAGCATGTCTGGGCCACTCCCACTGTCGGAGAACTCTCCTG-GGG----CGGGGAGATGGCccaggtttgcggggcttgaaagcttacacagtgttgtgccttttcaagaaaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30575645 356 + 173848474 CCTGGAATTCTGGAGCCGCCGCAAAGATAGGAACTCAAAACGACCCGAGC-CCCGGAGCCGCAG-CCC--------------CTCGGGACGGTCACG----------AGCAGAG-CTTCCAAGGG----GACCGCTGGGGACT-------------GGGCGGGGGCTCTGCTTCTCACCTGTTCCTTCTCTATCCACTGAGCCCTGACACGTAGGACCAGCGCTACTAACAGACTTGTTTTCCGGTTCAGCTCCCCTTAGGGCTCCTGTTGGAAACCGGGCCTATCTGGGGAGCATGTCTGGGCCACTCCCACTGTCGGAGAACTCTCCTG-GGG----CGGGGAGATGGCccaggtttgcggggcttgaaagcttacacagtgttgtgccttttcaagaaaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     282694 356 +   2037526 CCTGGAATTCTGGAGCCGCCGCAAAGATAGGAACTCAAAACGACCCGAGC-CCCGGAGCCGCAG-CCC--------------CTCGGGACGGTCACG----------AGCAGAG-CTTCCAAGGG----GATCGCTGGGGACT-------------GGGCGGGGGCTCTGCTTCTCACCTGTTCCTTCTCTATCCACTGAGCCCTGACACGTAGGACCAGCGCTACTAACAGACTTGTTTTCCGGTTCAGCTCCCCTTAGGGCTCCTGTTGGAAACCGACCCTATCTGGGGAGCCTGTCTGGGCCACTCCCATTGCCGGAGAACTCTCCTG-GGG----aggggagatggcccaggtttgtggggcttgaaagcttacacagtgttgtgccttttcaagaaaaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74949688 355 + 122973662 CCTGGAATTCTGGAGCCGCCGCAAAGATA-GAACTCAAAACGACCCGAGC-CCCGGAGCCGCAG-CCC--------------CTCGGGACGGTTACG----------AGCAGAG-CTTCCAAGGG----GACCGCTGGGCACT-------------GGGCGGGGGCTCTGCTTCTCACCTGTTCCTTCTCTATCCACTGAGCCCTGACACGTAGGACCAGCGCTACTAACAGACTTGTTTTCCGGTTCAGCTCCTCTTAGGGCTCCTGTGAGAAACCGACCCTATCTGGGGAGCCTGTCTGGACCACTCCCATTGCCGGAGAACTCTCCTg-ggg----cggagaaatggcccaggtttgtggggcttgaaagcttacacagtgttgggccttttcaagaaaaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30827629 363 + 172585720 CCTGGAATTCTGGAGCCGCCGCAAAGATAGGAACTCAAAACGGCCTGAGT-CCCGGAGCCGCAG-CCC--------------CTTGGGACGGTTACG---AACTTTCAGCAGAG-CTTCCAAGGGAACTGACCGCTGGGCACT-------------GGCCAAGGGCTCTGCTGCTCACCTGTTCCTCCTCTATCCATTAAGACCTGACACATAGGACCAGCG---CTAAGAGACTTGTTTTCCAGTTCAGCTCTCCTTAGGGCTTCTGTTGGAAACCGGCCCTATCTGGGGAGCCTGTCTGGGCCACTCCCACTGCCGGAGAACTCTCTTG-GGG----CGGGGAGATGGCccaggtttgtggggcttgaaa-cttacacggtgttggaccttttcaagaaaaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30117119 364 - 170955103 CCTGGAATTCTGGAGCCGCCGCAAAGATAGGAACTCAAAACGGCCTGAGT-CCCGGAGCCGCAG-CCC--------------CTTGGGACGGTTACG---AACTTTCAGCAGAG-CTTCCAAGGGAACTGACCGCTGGGCACT-------------GGCCAAGGGCTCTGCTGCTCACCTGTTCCTCCTCTATCCATTAAGCCCTGACACATAGGACCAGCG---CTAAGAGACTTGTTTTCCAGTTCAGCTCTCCttagggcttctgttggaaaccggccctatctggggagcctgtctgggccactcccactgccggagaactctcctg-gcg----cAGAGAGATGGCccaggtttgtggggcttgaaagcttacacggtgttggaccttttcaagaaaaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     366027 368 +   1495729 CCTGGAATTCTGGAGCCGCCGCAAAGATAGGAACTCAAAACGGCCTGAGT-CCCGGAGCCGCAGCCCC--------------CTTGGGACGGTTACG---AACTTTCAGCAGAG-CTTCCAAGGGAATTGACCGCTGGGCACT-------------GGGCAGGGGCTCTGCTGCTCACCTGTTTCTCCTCTATCCACTGAGCCCTGACACATAGGACCAGCGCTACTAAGAGACTTGTTTTCCAGTTCAGCTCTCCttagggcttctgttggaaaccggccctatctggggagcctgtctgggccactcccactgccggggaactctcctg-GGA----CGGGGAGATGGCTcaggtttgtggggcttgaaagcttacacggtgttggaccttttcaagaaaaag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     468140 367 -    863181 CCTGGAATTCTGGAGCCGCCGCAAAGATAGGAACTCAAAACGGCCTGAGT-CCCGGAGCCGCAG-CCC--------------CTCGGGACGGTTACG---AGCTTTCAGCAGAG-CTTCCAAGGGAACTGACCGCTGGGCACT-------------GGGCAGGGGCTCTGCTGCTCACCTGTTCCTCCTCTATCCACTGAGCCCTGACACATAGGACCAGCGCTACTAAGATACTTGTTTTCCAGTTCAGCTCTCCTTAGGGCTTCTGTTGGAAACCGGCCCTATCTGGGGAGCCTGTCTGGGCCACTCCCACTGCCGGAGAACTCTCTCG-GGG----CGGGGAGATGGCccaggtttgtggggcttgaaagcttacacggtgttggaccttttcaagaaaaag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29617781 364 -  71996105 CCTGGAATTCTGGAGCCGCCGCAAAGATAGGAACTCAAAACGGCCTGAGC-CCCGGAGCCGCAA-CCC--------------CTTGGGACGGTTACG---AACTTTCAGCAGAG-CTTTCAAGGGAACTGACCGCTGGGCACT-------------GGGCAGGGGCTCTGCTGCTCACTTGTTCCTCCTCTATCCACTGAGCCCTGACACATAGGACCAGCG---CTAAGAGACTTGTTTTCCAGTTCAGCTCTCCTTAGGGCTTCTGTTGGAAACTGGCCCTATTTGGGGAGCCTGTCTGGGCCACTCCCACTGCCGGAGAACTCTCTTG-GGG----CGGGGAGATGGCccaggtttatggggcttgaaagcttgcacggtgttggaccttttcaagaaaaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     327838 368 -    735854 CCTGGAATTCTGGAGCCGCCGCAAAGATAGGAACTCAAAACGGCCTGAGT-CCCGGAGCCGCAGCCCC--------------CTTGGGACGGTTACG---AACTTTCAGCAGAG-CTTCCAAGGGAACTGACCGCTGGGCACT-------------GGGCAGGGGCTCTGCTGCTCACCTGTTCCTCCTCTATCCACTGAGCCCTGACACATAGGACCAGCGCTACTAAGATACTTGTTTTCCAGTTCAGCTCTCCTTAGGGCTTCTGTTGGAAACCGGCCCTATCTGGGGAGCCTGTCTGGGCCACTCCCACTGCTGGAGAACTCTCCTG-GGG----CGGGGAGATGGCccaggtttgtggggcttgaaagcttacacggtgttggaccttttcaagaaaaag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     255339 366 -   1829203 CCTGGAATTCTGGAGCCGCCGCAAAGATAGGAACTCAAAACCGCCTGAGC-CCCGGAGCGGCAG-CCC--------------CTCGGGACGGTTATG---AACTTTCAGCAGAG-CTTCCAAGGGAACTGACCGCTGGGCACT-------------GGGCAGGGGCTCTGCTGCTCACCTGTTCCTCCTCTATCCACTCAGCCCTGACACATAGGACCAGCGCTACTAAGAGACTTGTTTTCCAGTTCAGCTCTCCTTAGGGCTTCTGTTGGAAACCGGCCCTATCTGGGGAGCCTGTCTGGGCCACTCCCACTGCCGGAGAACTCTCTTG-GGG----CGGGgagatgga-caggtttgtggggcttgaaagcttacacggtgttggaccttttcaagaaaaag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30450203 361 + 171630274 TCTGGAATTCTGGAGTCGTGTCAAAGACAGGAATTCAAAACGGCCTGAGCGCCCTGAGAGGCAG-CCC--------------TTCGGGACGGTTACT---AACCTTCAGCAGGA-CTTCCAAGGGAGCTGACCGCTAGGCACT-------------------GAGCTCTGCTTTTCACCTGTTCCTCCTCCATCCACTGAGCTCTGACACGTAGGACCAGAGCTACCGAGAGACTTGTTTTCTGGTTCAACTCCCCTTAGGGCTCCTGTTGGAAACTGGTCCTATCTGAGGAGCGTGCCTAGGCCACTCCCACTGCTGGAAAACTCTCCTG-GGG----CAGGAAGAgggcccaggtttgtggggttt-caaccttacacagtgttcgatcttttcaagaaaaag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           261870 364 +    515838 TCTGGAATTCTGGAGTCGTGTCAAAGACAGGAATTCAAAACGGCCTGAGCCCCGGGAGATGCAG-CCC--------------CTCGGGACGGTTACTAACAACCTTCAGCAGGA-CTTCCAAGAGAGCTGACCGCTGGGCACT-------------------GGGCTCTGCTTTTCACTTGTTCCTCCTCCATCCACTGAGCCCTGACACTTAGGACCAGCACTACCAAGAGATTTGTTTTCCGGTTCAGCTCCCCCTAGGGCTCCTGCTGGAAACCGGCCCTATCTGAGGAGCGTGCCTGGGCCACTCCCACTGCTGGAAAACTCTCCTG-GGG----CGGGAAGATTGCccaggtttgtgagactt-caagcttacacagtgttggaccttttcaagaaaaag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     890891 361 -   1771730 TCTGGAATTCTGGAGTCGTGTCAAAGACAGAAATTCAAAACGGCCTGAGCCCCCGGAGAGGCAG-CCC--------------CTGGGGACGGTTACT---AACCTTCAGCAGGA-CTTCCAAGGGAGCTGACCGCTGGGCACT-------------------GGGCTCTGCTTTTCACCTGCTCCTCCTTCATCCACTGAGCCCAGACA-GTAGGACCAGCGCTACCAAGAGACTTGTTTTCCGGTTCAGCTCCCAGTAGGGCTCCTGTTGGAAACCGGCCCTATCTGAGGAGCGTGCCTGGGCCACTCCCACTGCTGGAAAACTCTCTTGTGGG----ggggaagatggcccaggtttgtaggactt-caaggttacacagtgttggaccttttcaagaaaaag
i cebCap1.NW_016107755v1   C 0 I 2
s aotNan1.NW_018496901v1      66726 361 -    486031 TCTGGAATTCTGGAGTTGTGTCAAAGACAGGAATTCAAAACGGCCTGAGCCCCCGGAGAGGCAG-CCC--------------CTCGGGACAGTTACT---AACCTTCAGCAGGA-CTTCCAAGAGAGCTGACCGGTAGGCACT-------------------GGGCTCTGCTTTTCACCTGTTCCTCCTCCATCCACTGAGCCCTGACACGTAGGACCAGCGCTACCAAGAGATTTGTTTTCCGGGTCAGCTACCCTTAGGGCTCCTGTTGGAAACCGGCCCTATCTGAAGAGACTGCGTGGGCCACTCCCACTGCTGGAAAACTCTCCTG-GGG----CAGGAAGATGGCccaggtttgtggggctt-caagttgacacagtgttggaccttttcaagaaaaag
i aotNan1.NW_018496901v1   C 0 I 2
s otoGar3.GL873550           300173 345 +  18854210 CCTGGAATTCTGAAGCCGCTGGGAAGAAAGGAACTGAAAACAGCCTGAGCACTGGGATCCTCAC-CCCACACCGCCACCGCTCCGGGGACGGTTAGG---ATCTTTCAGCAGGGACGTGCAAGGGAACTGAATGCTGAGCACACAAGGCCGGGCCGGGTCTGGGACTCTACGTCGCAACAGTCCCTCCT---GCCGCTGAGCCCTGCCT-------CCAGCGCTACTAAGCAACTTGTCCT------------------GGGTTGCAAGTGCCCACCAGC--------------------AGCGCATCCCCACTGCCCAGAAACAATTCTG-GGGGAGcaggggagacggcccaagtttgtggagctt-taagctt------ttgtgggccttttcaagacaaag
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297            11353 513 +     53444 I
e proCoq1.NW_012149775v1     152422 1536 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=16640.000000
s hg38.chr6_GL000254v2_alt  1472186 2 +   4827813 ga
s panTro5.chr6             30341645 2 + 175400573 ga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30576001 2 + 173848474 ga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     283050 2 +   2037526 ga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74950043 2 + 122973662 ga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30827992 2 + 172585720 ga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30117483 2 - 170955103 ga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     366395 2 +   1495729 ga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     468507 2 -    863181 ga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29618145 2 -  71996105 ga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     328206 2 -    735854 ga
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     255705 2 -   1829203 ga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30450564 2 + 171630274 aa
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           262234 2 +    515838 aa
i saiBol1.JH378341         C 0 I 1
s otoGar3.GL873550           300518 2 +  18854210 ga
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297            11353 513 +     53444 I
e proCoq1.NW_012149775v1     152422 1536 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e aotNan1.NW_018496901v1      67087 2 -    486031 I
e cebCap1.NW_016107755v1     891252 2 -   1771730 I

a score=19068.000000
s hg38.chr6_GL000254v2_alt  1472188 3 +   4827813 tac
s panTro5.chr6             30341647 3 + 175400573 tac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30576003 3 + 173848474 tac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     283052 3 +   2037526 tac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74950045 3 + 122973662 tgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30827994 3 + 172585720 tac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30117485 3 - 170955103 tac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     366397 3 +   1495729 tac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     468509 3 -    863181 tac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29618147 3 -  71996105 tac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     328208 3 -    735854 tac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     255707 3 -   1829203 tac
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           300520 3 +  18854210 cac
i otoGar3.GL873550         C 0 I 124
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297            11353 513 +     53444 I
e proCoq1.NW_012149775v1     152422 1536 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           262236 1 +    515838 I
e aotNan1.NW_018496901v1      67087 2 -    486031 I
e cebCap1.NW_016107755v1     891252 2 -   1771730 I
e calJac3.chr4             30450566 1 + 171630274 I

a score=356928.000000
s hg38.chr6_GL000254v2_alt  1472191 61 +   4827813 agccgggcacggtggctcacgcctgtaatcccggtactttgggtggccgaggtgggtggat
s panTro5.chr6             30341650 61 + 175400573 agccgggcgcggtggctcacgcctgtaatcccagcactttgggtggccgaggtgggtggat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30576006 61 + 173848474 agccgggcgcggtggctcacgcctgtaatcccagcactttgggtggccgaggtgggtggat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     283055 61 +   2037526 agccgggcacggtggctcacgcctgtaatcccggtactttgggtggccgatgtgggtggat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74950048 61 + 122973662 agccgggcacggtggctcacgcctgtaatcccggtactttgggtggccgaggtgggtgcat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30827997 61 + 172585720 agctgggcgcggtggctcacacctgtaatcccagtactttgggtgaccgagatgggtggat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30117488 61 - 170955103 agctgggcgcggtggctcacacctgtaatcccagtactttgggtgaccgagatgggtggat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     366400 61 +   1495729 agccgggcgcggtggctcacgcctgtaatcccagtactttgggtggccgagatgggtggat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     468512 61 -    863181 agccgggcgcggtggctcatgcctgtaatcccagtactttgggtggccgagatgggtggat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29618150 61 -  71996105 agccgggcgcggtggctcacgcctgtaatcccagtactttgggtgaccaagatgggtggat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     328211 61 -    735854 agccgggcgcggtggctcatgcctgtaatcccagtactttgggtggccgagatgggtggat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     255710 61 -   1829203 agccgggcgcggtggctcacgcctataatcccagtactttgggtggccgagatgggtggat
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297            11353 513 +     53444 I
e proCoq1.NW_012149775v1     152422 1536 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           262236  1 +    515838 I
e otoGar3.GL873550           300523 124 +  18854210 I
e aotNan1.NW_018496901v1      67087  2 -    486031 I
e cebCap1.NW_016107755v1     891252  2 -   1771730 I
e calJac3.chr4             30450566  1 + 171630274 I

a score=1258941.000000
s hg38.chr6_GL000254v2_alt  1472252 254 +   4827813 cacgaggtcaggaga--tcgagaccatcctggccaacatggtgaaacctcgtctctactaaaaatacaaaaaattagctgggcatagtgagtggcatgtgcctgtaatcccagctactcgggcggctgagccaggagaatctcttgaaccagggaggcggaggttgcagtgaggcagtgagccaagatcgttgccactacactcaggtctggcgac--agagcaacactccgtctcaaaataaaaaaattaaaaaaaa
s panTro5.chr6             30341711 249 + 175400573 cacgaggtcaggata--tcgagaccatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaaattagctgggc---gtg-gtggcgtgtgcctgcaatcccagctactcgggcggctgaggcgggagaatcccttgaaccagggaggcggagggtgcagtgaggcagtgagccgagatcg-tgccactgcactccggtctggcgac--agagcaagactccgtctcaaaaaaaaaaaaaaaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30576067 239 + 173848474 cacgaggtcaggata--tcgagaccatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaaattagctgggc---gtg-gtggcgtgtgcctgcaatcccagctactcgggcggctgaggcgggagaatcccttgaaccagggaggcggagggtgcagtgaggcagtgagccgagatcg-tgccactgcactccggtctggcgac--agagcaagactccgtctacaaaaaaaaaaa----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     283116 246 +   2037526 cacaaggtcaggaga--tcgagaccatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaaattagctgggc---ata-gtggcgtgtgcctgtaatcccagctactcgggcggctgagccgggagaatctcttgaaccagggaggcggaggttgcagtgaggcagtgagccaagatca-tgccactacactcaggtctggcgac--agagcaacactccgtctcaacataaaaaaa---taaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74950109 246 + 122973662 cacgaggtcaggaga--tcgagaccatcctggccaacatggtgaaaccccgtttctactaaaaatacaaaaaattagccgggc---gta-gtggcgtgtgcctgtaatcccagctactcgggcggctgagccgggagaatcccttgaaccagggaggcggaggttgcagtgaggcagtgagccaagatcg-tgccactgcactcaggcctggcgac--agagcaagactccgtctcaaaataaaaaat---aaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30828058 229 + 172585720 cacgaggtcaggaga--tcgagaccatccttgccaacatggtgaaaccccgcctctactaaaaatacaaaaaattagctgggc-----a-gtggcgcgtggcagtaatcccagatactagggcggctgagccgggagaatcccttgaaccagggaggcggaggttgcagtgaggcagtgagccaagatcg-tgccactgtactcaggcctggcgac--agagcaagactccgtctcaaac------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30117549 229 - 170955103 cacgaggtcaggaga--tcgagaccatccttgccaacatggtgaaaccccgcctctactaaaaatacaaaaaattagctgggc-----a-gtggcgcgtggcagtaatcccagatactagggcggctgagccgggagaatcccttgaaccagggaggcggaggttgcagtgaggcagtgagccaagatgg-tgccactgtactcaggcctggcgac--agagcaagactccgtctcaaac------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     366461 235 +   1495729 cacgaggtcaggaga--tcgagaccgtccttgccaacatggtgaaaccccgcctctactaaaaatacaaaaaattagctgggc-----a-gtggcgcgtggctgtaatcctagctactagggcggctgagccgggagaatcctttgaaccagggaggcggaggttgcagtgaggcagtgagccaagatcg-tgcggctgtactcaggcctgg-gac--agagcaagactccgtctcaaaaa-----------aaaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     468573 211 -    863181 cacgaggtcaggaga--tcgagaccgtccttgccaacatggtgaaaccccgcctctactaaaactacaaaaaattagctgggc-----a-gtggcgcgtggctgtaatcctagctactagggcggc------------------tgaaccagggaggcggaggttgcagtgaggcagtgagccaagatcg-tgccactgtactcaggcctggggac--agagcaagactccgtctcaaaa------------------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29618211 230 -  71996105 cacgaggtcaggaga--tcgagaccatccttgccaacatggtgaaactccgcctttactaaaaatacaaaaaattagctgggc-----a-gtggcgcgtggctgtaatcccagctactagggcggctgagccgggagaaccccttgaaccagggaggcggaggttgcagtgaggcagtgagccaagatcg-tgccactgtaatcaggcctggcgac--agagcaagactccgtctcaaaaa-----------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     328272 241 -    735854 cacgaggtcaggaga--tcgagaccgtccttgccaacatggtgaaaccccgcctctactaaaaatacaaaaaattagctgggc-----a-gtggcgcgtggctgtaatcctagctactagggcggctgagccgggagaatcctttgaaccagggaggcggaggttgcagtgaggcagtgagccaagatcg-tgccgctgtactcaggcctgg-gac--agagcaagactccgtctcaaaaaaaaaa-----aaaaaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     255771 228 -   1829203 cacgaggtcaggaga--tcgagaccatccttgccaacatggtgaaaccccgcctctactaaaaatacaaaaaattagccggtc-----a-gtggcgcgtggctgtaatcccagctactaaggcggctgagccgggagaatcctttgaaccagggaggcagaggttgcagtgaggcagtgagccaagattg-tgccactgtactcaggcctggcgac--agagcaagactccgtctcaaa-------------------
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           300647 235 +  18854210 caccgaggcaggagggttcgaacctgcccgggcc----tgctaaacaacaatgacaactaca---acaaaaaaatagctgggt---gtt-gtggcaggtgcctgtagtcccagctacttgggaagctgaggcaagagaatcacttaagcccaagaatttaatgttgctgaga-gctgtg----------g-cgccagggcactctacccagggcacttatagtgagactctgtctcttaaaaaataaaataaaataaa
i otoGar3.GL873550         I 124 I 3175
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297            11353 513 +     53444 I
e proCoq1.NW_012149775v1     152422 1536 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           262236   1 +    515838 I
e aotNan1.NW_018496901v1      67087   2 -    486031 I
e cebCap1.NW_016107755v1     891252   2 -   1771730 I
e calJac3.chr4             30450566   1 + 171630274 I

a score=28415.000000
s hg38.chr6_GL000254v2_alt  1472506 17 +   4827813 aaggaaagaaagaaaag
s panTro5.chr6             30341960  1 + 175400573 a----------------
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     283362 17 +   2037526 aaggaaagaaagaaaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74950355 17 + 122973662 aaggaaagaaagaaaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30828287 15 + 172585720 --aagagaaaagaaaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30117778 15 - 170955103 --aagagaaaagaaaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     366696 17 +   1495729 agaaaagaaaagaaaac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     468784  6 -    863181 -----------aaaaag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29618441 15 -  71996105 --aagagaaaagaaaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     328513 17 -    735854 agaaaagaaaagaaaag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     255999 15 -   1829203 --aaaagaaaagaaaag
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297            11353 513 +     53444 I
e proCoq1.NW_012149775v1     152422 1536 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           262236  1 +    515838 I
e otoGar3.GL873550           300882 3175 +  18854210 I
e aotNan1.NW_018496901v1      67087  2 -    486031 I
e cebCap1.NW_016107755v1     891252  2 -   1771730 I
e calJac3.chr4             30450566  1 + 171630274 I
e panPan2.chr6             30576306  0 + 173848474 C

a score=36025.000000
s hg38.chr6_GL000254v2_alt  1472523 7 +   4827813 aaaaagg
s gorGor5.CYUI01015528v1     283379 7 +   2037526 aaaaagg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74950372 7 + 122973662 aaaaagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30828302 7 + 172585720 aaaaagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30117793 7 - 170955103 aaaaagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     366713 7 +   1495729 aaaaagg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     468790 7 -    863181 aaaaagg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29618456 7 -  71996105 aaaaagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     328530 7 -    735854 aaaaagg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     256014 7 -   1829203 aaaaagg
i colAng1.NW_012115577v1   C 0 C 0
s dasNov3.JH567297            11866 7 +     53444 aaaaagg
i dasNov3.JH567297         I 513 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     152422 1536 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           262236 1 +    515838 I
e otoGar3.GL873550           300882 3175 +  18854210 I
e aotNan1.NW_018496901v1      67087 2 -    486031 I
e cebCap1.NW_016107755v1     891252 2 -   1771730 I
e calJac3.chr4             30450566 1 + 171630274 I
e panPan2.chr6             30576306 0 + 173848474 C
e panTro5.chr6             30341961 0 + 175400573 C

a score=1841.000000
s hg38.chr6_GL000254v2_alt  1472530 1 +   4827813 -a
s panTro5.chr6             30341961 1 + 175400573 -a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30576306 1 + 173848474 -a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     283386 1 +   2037526 -a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74950379 1 + 122973662 -a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30828309 1 + 172585720 -a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30117800 1 - 170955103 -a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     366720 1 +   1495729 -a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     468797 1 -    863181 -a
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29618463 1 -  71996105 -a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     328537 1 -    735854 -a
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     256021 1 -   1829203 -a
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     891254 1 -   1771730 -a
i cebCap1.NW_016107755v1   I 2 C 0
s aotNan1.NW_018496901v1      67089 1 -    486031 -a
i aotNan1.NW_018496901v1   I 2 C 0
s dasNov3.JH567297            11873 1 +     53444 t-
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     152422 1536 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           262236 1 +    515838 I
e otoGar3.GL873550           300882 3175 +  18854210 I
e calJac3.chr4             30450566 1 + 171630274 I

a score=984485.000000
s hg38.chr6_GL000254v2_alt  1472531 92 +   4827813 tacagaatttgacaaaattaagaataaaagcaaata-tgacttacaatgaggaaaaacaatgacagcaaatgataaatgtttaaaaactgaca
s panTro5.chr6             30341962 92 + 175400573 tacaaaatttgacaaaattaagaataaaagcaaata-tgacttagaatgaggaaaagcagtgacagcaaatgataaatgtttaaaaactgacg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30576307 92 + 173848474 tacaaaatttgacaaaattaagaataaaagcaaata-tgacttagaatgaggaaaagcagtgacagcaaatgataaatgtttaaaaactgacg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     283387 92 +   2037526 tacagaatttgacaaaattaagaataaaagcaaata-tgacttacaatgaggaaaatcaatgacagcaaatgataaatgtttaaaaactgaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74950380 92 + 122973662 tacagaatttgacaaaattaagaataaaagcaaata-tgacttacaatgaggaaaagcaatgacagcaaatgataaatgtttaaaaactgaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30828310 92 + 172585720 tacaaaatttgacaaaattaagaataaatgcaaata-tgacttagaatgaggaaaagcagtgacagcaaatgataaatgtttaaaaactgaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30117801 92 - 170955103 tacaaaatttgacaaaattaagaataaatgcaaata-tgacttagaatgaggaaaagcagtgacagcaaatgataaatgtttaaaaactgaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     366721 92 +   1495729 tacaaaatttgacaaaattaagaataaatgcaaata-tgacttagaatgaggaaaagcagtgacagcaaatgatgaatgtttaaaaactgaca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     468798 92 -    863181 tacaaaatttgacaaaattaagaataaatgctaata-tgacttagaatgaggaaaagcagtgacagcaaatgataaatgtttaaaaactgaca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29618464 92 -  71996105 tacaaaatttgacaaaattaagaataaatgcaaata-tgacttagaatgaggaaaagcagtgacagcaaatgataaatgtttaaaaactgaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     328538 92 -    735854 tacaaaatttgacaaaattaagaataaatgcaaata-tgacttagaatgaggaaaagcagtgacagcaaatgataaatgtttaaaaactgaca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     256022 92 -   1829203 tacaaaatttgacaaaattaagaataaatgcaaata-tgacttagaatgaggaaaagcagtgacagcaaatgataaacgtttaaaaactgaca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30450567 92 + 171630274 tacaaaatttgacaaaattaagaataaaagaaaata-tgacttagaatgaggaaaagcagcgacagcaaatgatcaatgtttaaaagctgaca
i calJac3.chr4             I 1 I 2
s saiBol1.JH378341           262237 88 +    515838 tacaaaatttgacaaaattaagaataaaagcaaata-tgacttggaa----gaaaagcagtgacagtaaatgataaatgtttaaaagctgaca
i saiBol1.JH378341         I 1 I 2
s cebCap1.NW_016107755v1     891255 92 -   1771730 tacaaaatttgacaaaattaagaataaaagaaaata-tgacttagaatgaggaaaagcagtgacagtaaatgataaatgtttaaaagctgaca
i cebCap1.NW_016107755v1   C 0 I 35
s aotNan1.NW_018496901v1      67090 92 -    486031 tacaaaatttgacaaaattaagaataaaagaaaata-tgacttagaatgaggaaaagcagtgacagcaaattataaatgtttaaaagctgaca
i aotNan1.NW_018496901v1   C 0 I 2
s dasNov3.JH567297            11874 84 +     53444 tatagaattaga-------aataaccaaaggaaatatttacttagaatga-gaacagcaatgacaacaaattacaaat-tttgaaagcagagg
i dasNov3.JH567297         C 0 I 2
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     152422 1536 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           300882 3175 +  18854210 I

a score=207348.000000
s hg38.chr6_GL000254v2_alt  1472623 30 +   4827813 tatcacaaacatc-----aaaaaatccccccaaaa
s panTro5.chr6             30342054 30 + 175400573 tatcacaaacatc-----aaaaaatccaaaaaaaa
i panTro5.chr6             C 0 I 1
s panPan2.chr6             30576399 30 + 173848474 tatcacaaacatc-----aaaaaatccaaaaaaaa
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01015528v1     283479 29 +   2037526 tatcacaaacatc-----aaaaaatcccaaaaaa-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74950472 30 + 122973662 tatcacaaacatc-----aaaaaatccaaaaaaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30828402 30 + 172585720 tattacaaacatc-----aaaaaatccaaaaactg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30117893 30 - 170955103 tatcacaaacatc-----aaaaaatccaaaaactg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     366813 30 +   1495729 tatcacaaacatc-----aaaaaatccaaaaaaag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     468890 30 -    863181 tatcacaaacatc-----aaaaaatccaaaaaaag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29618556 30 -  71996105 tatcacaaacatc-----aaaaaatccaaaaaagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     328630 30 -    735854 tatcacaaacatc-----aaaaaatccaaaaaaag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     256114 28 -   1829203 tatcacaaacatc-----aaaaa--tcaaaaaaag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30450661 32 + 171630274 taccgcaaacatc--aaaaaaaaatcctaaaaaa-
i calJac3.chr4             I 2 I 1
s saiBol1.JH378341           262327 34 +    515838 taccacaaacatcaaaaaaaaaaatccaaaaaaa-
i saiBol1.JH378341         I 2 C 0
s aotNan1.NW_018496901v1      67184 30 -    486031 taccacaaacatc----aaaaaaatccaaaaaaa-
i aotNan1.NW_018496901v1   I 2 C 0
s dasNov3.JH567297            11960 25 +     53444 tatcacaaatgtt------aaaaatgcagaa----
i dasNov3.JH567297         I 2 I 8
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     152422 1536 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           300882 3175 +  18854210 I
e cebCap1.NW_016107755v1     891347 35 -   1771730 I

a score=4022381.000000
s hg38.chr6_GL000254v2_alt  1472653 438 +   4827813 ttctaa-taactgcttgaa-ccacc----------cctatattttcccat---ttatattttttga---ttccctcttcattcgacaacacttttgtaatgtattttcctgggtgagaatgaataatttggtatttcgtctagcatagttaagcaaaaa-aagttttt---attgaaagtttagaaaagttaatatccatttcacaa-tcgttattggt-aataatatgcaaatttttagtgctattaattttggagaagcctctgtgaagagtttcctatgtaagc-ctgagatttcagggcatttcaagttttcttgggcagtgactaatcttaaat-----------------------actcttttaagttgctgaaagtcattggcctgtttttcgttaagtccttgttgtgaaggtgtagtatgaa------actgtttgt--agatgtcaatattttatgccaaaacaacaatttttt-taagtttta
s panTro5.chr6             30342085 438 + 175400573 ttctaa-taattgcttgaa-ccacc----------cctatattttcccct---ttatattttttga---ttccctctttatttgacaacacttttgtaatgtattttcctgggtgagaatgaataatttggtatttcgtctagcagagttaagcaaaaa-aagttttc---attgaaagtttagaaaagttaatgtccgtttcacaa-tcgttattggt-aataatatgcaaatttttagtgctattaattttggagaagcctctgtgaagagtttcctatgtaagc-ctgagatttcagggcatttcaagttttcttgggcagtgactaatcttaaat-----------------------acttttttaagttgctaaaagtcactggcctgttttttgttaagtccttgttgtaaaggtgtagcatgaa------attgtttgt--agatgtcaatattttatgccaaaacaacaatttttt-aaagtttta
i panTro5.chr6             I 1 C 0
s panPan2.chr6             30576430 438 + 173848474 ttctaa-taattgcttgaa-ccacc----------cctatattttcccct---ttatattttttga---ttccctctttatttgacaacacttttgtaatgtattttcctgggtgagaatgaataatttggtatttcgtctagcatagttaagcaaaaa-aagttttc---attgaaagtttagaaaagttaatatccgtttcacaa-tcgttattggt-aataatatgcaaatttttagtgctattaattttggagaagcctctgtgaagagtttcctatgtaagc-ctgagatttcagggcatttcaagttttcttgggcagtgactaatcttaaat-----------------------acttttttaagttgctaaaagtcactggcctgttttttgttaagtccttgttgtaaaggtgtagcatgaa------attgtttgt--agatgtcaatattttatgccaaaacaacaatttttt-aaagtttta
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01015528v1     283508 437 +   2037526 ttctaa-tagctgcttgaa-ccacc----------cctatattttcccat---ttatattttttga---ttccctcttcatttgacaacacttttgtaatgtattttcctgagtgagaatgaataatttggtatttcatctaacatagttaagcaaaaa-aagttttt---attgaaagtttagaaaagttaatatccatttcacaa-t-gttattggt-aataatatgcaaatttttagtgctaataattttggagaagcctctgtgaagagtttcctatgtaagc-ctgagatttcagggcatttcaagttttcttgggcagtgactaatcttaaat-----------------------actcttttaagttgctaaaagtcattggcctgtttttctttaagtccttgttgtaaaggtgtagtatgaa------attgtttgt--agatgtcaatattttatgccaaaacaacaatttttt-taagtttta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74950502 437 + 122973662 ttctaa-taactgcttgaa-ccacc----------cctatattttcccct---ttatattttttga---ttccctcttcatttgacaacac-tttgtaatgtattttcctgggtgagaatgaataatttggtattttgtctagcatagttaagcaaaaa-aaagttt----attgaaagtttagaaaagttaatatccatttcacaa-tcgttattggt-aataatatgcaaa-ttttagtgctattaattttggagaagtctctgtgaagagtttcctatgtaagc-ctgagatttcagggcatttcaagttttcttgggcagtgactaatcttaaat-----------------------actcttttaagttgctaaaagtcattggcctgttttttgttaagtccttgttgtaaaggtgtagtatgaa------attgtttgttcagatgtcaatattttataccaaaacaacaatttttt-taagtttta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30828432 425 + 172585720 ttctaa-taactgcttgaa-ccacc----------cctatattttcccct---ttatattttttga---ttccgtcttcatttgacaacacttttctaatatattttcctgggtgagaatgaataagttggtatttcgtccagcatagttaagcaaaaa-aggttttt---actgaaagtttagaaaagttaatatccgtttcacaa-tcgttattgtt-aataatatgcaaatttttagtgctattaattttggagaagcctctgtgaagagtttcctatgtaagc-ctgagatttcagggcatttcaagttttcttgggcagtgattaatcttaaat-----------------------actcttttaagttgccagaagtcactggcctgttttttgttaagtccttgttgtaaagttgtagtatgaa------attgtttgt---------------ctatgccaaaacaacaattttta-aaagtttta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30117923 425 - 170955103 ttctaa-taactgcttgaa-ccacc----------cctatattttcccct---ttatgttttttga---ttccctcttcgcttgacaacacttttctaatatattttcctgggtgagaatgaataagttggtatttcgtccagcatagttaagcaaaaa-aggttttt---actgaaagtttagaaaagttaatatccgtttcacaa-tcgttattgtt-aataatatgcaaatttttagtgctattaattttggagaagcctctgtgaagagtttcctatgtaagc-ctgagatttcagggcatttcaagttttcttgggcagtgattaatcttaaat-----------------------actcttttaagttgccagaagtcactggcctgttttttgttaagtccttgttgtaaagttgtagtatgaa------attgtttgt---------------ctatgccaaaacaacaattttta-aaagtttta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     366843 425 +   1495729 ttctga-taactgcttgaa-ccacc----------cctatattttcccct---ttatgttttttga---ttccctcttcacttgacaacacttttctaatatattttcctgggtgagaatgaataagttggtatttcgtccggcatagttaagcaaaaa-aagttttt---attgaaagtttagaaaagttaatatcggtttcacaa-tcgttattgtt-aataatatgcaaatttttagtgctattaattttggagaagcctctgtgaagagtttcctatgtaagc-ctgagatttcagggcatttcaagttttcttgggcagtgattaatcttaaat-----------------------actcttttaagttgccagaagtcactggcctgttttttgttaagtccttgttgtaaagttgtagtatgaa------attgtttgt---------------ctatgccaaaacaacaattttta-aaagtttta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     468920 418 -    863181 ttctga-taactgcttgaa-ccacc----------cctgtattttcccct---ttatgttttttga---ttccctcttcacttgacaacacttttctaatatattttcctgggtgagaatgaataagttggtatttcgtccggcatagttaagcaaaaa-aaggtttt---attgaaagtttagaaaagttaatatccgtttcacaa-tcgttatcgtt-aataatatgcaaatttttagtgctattaattttggagaagcctctgtgaagagtttcctatgtaagc-ctgagatttcagggcatttcaagttttcttgggcagtgactaatcttaaat-----------------------actcttttaagttgctaaaagtcattgacctgttttttgttaagtccttgttgtaaagttgtagtatgaA------A----TTGT---------------CTATGCCAA---AACAATTTttt-aaagtttta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29618586 425 -  71996105 ttctaa-taactgcttgaa-ctacc----------cctgtattttcccct---ttatattttttga---ttctgtcttcatttgacaacacttttctaatatattttcctgggtgagaatgaataatttggtatttcgtccagcatagttaagcaaaaa-aggttttt---attgaaagtttagaaaagttaatatctgtttcacaa-tcgttattgtt-aataatatgcaaatttttagtgctattaattttggagaagcctctgtgaagagtttcctatgtaagc-ctgagatttcagagcatttcaagttttcttgggcagtgactaatcttaaat-----------------------actcttttaagttgctaaaagtcattggcctgttttttgttaagtccttgttgtaaagttgtagtattaa------attgtttgt---------------ctatgccaaaacaacaatttttt-aaagttttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     328660 418 -    735854 ttctga-taactgcttgaa-ccacc----------cctgtattttcccct---ttatgttttttga---ttccctcttcacttgacaacacttttctaatatattttcctgggtgagaatgaataagttggtatttcgtccggcatagttaagcaaaaa-aagttttt---attgaaagtttagaaaagttaatatctgtttcacaa-tcgttattgtt-aataatatgcaaatttttagtgctattaattttggagaagcctctgtgaagagtttcctatgtaagc-ctgagatttcagggcatttcaagttttcttgggcagtgattaatcttaaat-----------------------actcttttaagttgctaaaagtcattgacctgttttttgttaagtccttgttgtaaagttgtagtatgaA------A----TTGT---------------CTATGCCAA---AACAATTTttt-aaagtttta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     256142 425 -   1829203 ttctaa-taactgcttgaa-ccacc----------cctatattttcccct---ttatattttttga---ttccgtcttcatttgacaacacttttctaatatattttcctgggtgagaatgaataatttggtatttcgtctggcatagttaagcaaaaa-aagttttt---attgaaagtttagaaaagttaatatccatttcacaa-tcgttattgtt-aataatgtgcaaatttttagtgctattaattttggagaagcctctgtgaagagttttctatgtaagc-ctgagatttcagggcatttcaagttttcttgggcagtgactaatcttaaat-----------------------actcttttaagttgctaaaagtcattggcctcttttttgttaagtccttgctgtaaagttgtagtatgaA------ATTGTTTGT---------------CTATGCCAAAACAACAATTTttt-aaagtttta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30450694 419 + 171630274 -ttcta-taactgcttaaa-ccact----------gctatattttcacct---ttatactttttga---ttttctcttcatttg---acacttctgtaatgtattttcttgggtaagaatgaataatttggtatttcatctagcataggtaagcaaaaa-acatttttttaattgaaagtttaggaaagttaatatctgtttcacaa-tcattattggt-a---------aaatttttagtgctattaatcttggagacgcctctttgaagagtttcctatgtaagt-ctgagatttcagagcatttcaagttat-ttgtgcagtgactaatcttaaat-----------------------actcttttaagttgctacaggtcattgagctgtttattgttaaatccttgttgtaaaggtgtagta-gaa------attgttcgt--caatgtcaatattttatgtcaa---aacctttt-----aagtttta
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           262361 413 +    515838 --------agttgcttaaa-ccact----------gctatattttcacct---ttataccttttga---tttcctcttcatttg---acactttcataatgtattttcttgggtgagaataaataatttggtatttcatctagcatagttaagcaaaaataaaatttttttattgaaagtttagaaaagttaatatctgtttcacaa-tcattattgataa---------aaatttttagtgctattaattttggagtagcctctatgaagagtttcctatgtaagt-ctgagatttcagggcatttcaagttat-ttgggcagtgactaatcttaaat-----------------------actcttttaagttgctaaaggtcattgctctgtttattgttaagttctcgttgtaaaggtgtagga-gaa------att----gt--caatgtcaatattttatgtcaa---aactttttttt-aaagttt--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     891382 423 -   1771730 -ttcta-taactgcttaaa-tcact----------gctatattttcacct---ttatactttttga---ttccttcttcatttg---acacttttgtaatgtaatttcttgggtaagaatgaataatttggtatttcatctagcatagttaagcaaaaaaaattttttttaattgaaagtttagaaaagttaatatctctttcacga-tcattattggt-a---------aaatttttagtgctattaattttggagacgcctctgtgaagagtttcctatgtaagt-ctgagatttcagggcatttcaagttat-ttgggcagtgactaatcttaaat-----------------------actcttttaagttgctaaaggtcattgagctgtttattgttaagtcgttgtcgtaaaggtgtagtg-gaa------attgtttgt--caatgtcaatattttatgccaa---aactttttttt--aagtttta
i cebCap1.NW_016107755v1   I 35 C 0
s aotNan1.NW_018496901v1      67214 425 -    486031 gttcta-taactgcttaaa-ccact----------gctatattttcacctatattatactttttga---ttccctcttcatttg---acactttcgtaatgtattttcttgggtgagaatgaataatttggtatttcatctagcatagttaagcaaaaaaaaattttt---attgaaagtttagaaaagttaatatctgtttcacaa-tcattattggt-----------aaatttttagtgctattaattttggagacacctctgtgaggagtttcctatgtaagt-ctgagatttcagggcatttcaagtttt-ttgggcagtgactaatcttaaat-----------------------actcttttaagttgctaaaggtcattgagctgtttattgttaagtccttgtcgtaaaggtgtagga-gaa------attgtttgt--caatgtcaatattttatgccaa---aacatttatttttaagtttta
i aotNan1.NW_018496901v1   C 0 C 0
s dasNov3.JH567297            11993 437 +     53444 ttttaattaactgcctgaacccacctgctgtatttccaaaatttttagct---ttgtatttttttaaatctcgttcttcattta-tagcagtttc-------attttct--gttgag----aataatttggtttttcttctagcatggttaacaaaatt-tagtttttattatttaaagtttagaaaagtcaatttcagttttacaacttgttattggt-aataacatcc--acttttggtgttgttaaagttggggaaacccctgtcaagagtttttt-tgtgagctttaagatttcagaacatttcaagatttcttgggttttgactagccttaaatggtctaatagtctaatagtcttaattgtctttagttgctaaaggtctttaaactgtt----gtcaagtccttgttgtgaaggtacattatgaattctagattatcttt-------------------------------ttttttt-taagattta
i dasNov3.JH567297         I 8 I 2497
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e proCoq1.NW_012149775v1     152422 1536 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           300882 3175 +  18854210 I

a score=1855455.000000
s hg38.chr6_GL000254v2_alt  1473091 190 +   4827813 atgtgtttatgtggttaattcttcatcaagtgattgtcaaacaatctaggcatctattctatttaaaatgtatcccttcccttcaataaattgctggttttggctggaaccaaac---tttttttcttctt-caattccttttctgatgtcagaataacttctattaatttcatGTGCAAATATGCAAGAGATC
s panTro5.chr6             30342523 192 + 175400573 atgtgtttatgcggttcattcttcatcaagtgattgtcaaacaatctaggcatctattctatctaaaatgtatcccttcccttcaataaattgctggttttggctggaaccaaac-t-tttttttcttcttccaattccgtttttgatgtcagaataacttctattaatttcaCATGCAAATATGTAAGAGATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30576868 192 + 173848474 atgtgtttatgcggttcattcttcatcaagtgattgtcaaacaatctaggcatctattctatctaaaatgtatcccttcccttcaataaattgctggttttggctggaaccaaac-t-tttttttcttcttccaattccgtttttgatgtcagaataacttctattaatttcaCATGCAAATATGTAAGAGATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     283945 191 +   2037526 aagtgtttatgtggttaattcttcatcaagtgattgtcaaacaatctaggcatctattctatttaaaatgtatcccttcccttcaataaattgctggttttggctggaaccaaac---tttttttcttcttccaattccctttttgatgtcagaataacttctattaatttcatGTGCAAATATGCAAGAGATC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74950939 191 + 122973662 atgtgtttacgcggttcattcttcatcaagtgattgtcaaacaatctaggcatctattctattaaaaatgtatcccctcccttcaataaattgctggttttggctggaaccaaac---tttttttcttcttccaattctctttttgatgtcagaataacttctattaatttcatgtgcaaatattcaagagatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30828857 192 + 172585720 atgtgtttatgcggttcattcttcatcaagtgattgtcaaacaatctaggcatctattctatttaaaatgtatcccttcccttcaataagttgctggttttggctggaactaaac-t-tttttttcttcttccaattccctttttgatgtcagaacaacttctattaatttcatGTGCAAATATATAAGAGATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30118348 192 - 170955103 atgtgtttatgcggttcattcttcatcaagtgattgtcaaacaatctaggcatctattctatttaaaatgtatcccttcccttcaataagttgctggttttggctggaaccaaac-t-tttttttcttcttccaattccctttttgatgtcagaacaacttctattaatttcatGTGCAAATATATAAGAGATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     367268 192 +   1495729 atgtgtttatgcggttcattcttcatcaagtgattgtcaaacaatctaggcatctattctatttaaaatgtatcccttccctttgataagttgctggttttggctggaaccaaac-t-tttttttcttcttccaattccctttttgatgtcagaacaacttctattaatttcatGTGCAAATATATAAGAGATC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     469338 192 -    863181 atgtgtttatgcggttcattcttcatcaagtgattgtcaaacaatctaggcatctattctatttaaaatgtatcccttcccttcaataagttgctggttttggctggaaccaaac-t-gttttttcttcttccaattccctttttgatgtcagaacaacttctattaatttcatGTGCAAATATATAAGAGATC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29619011 192 -  71996105 atgtgtttatgcggttcattcttcatcaagtgattgtcaaacaatctaggcatctattctatttaaaatgtatcccttcccttcaataagttgctggttttggctggaatcaaac-t-tttttttcttcttccaattccctttttgatgtcagaataacttctattaatttcatGTGTAAATATGTAAGAGATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     329078 192 -    735854 atgtgtttatgcggttcattcttcatcaagtgattgtcaaacaatctaggcatctattctatttaaaatgtatcccttcccttcaataagttgctggttttggctggaaccaaac-t-gttttttcttcttccaattccctttttgatgtcagaacaacttctattaatttcatGTGCAAATATATAAGAGATC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     256567 193 -   1829203 atgtgtttatgcggttcattcttcatcaagtgattgtcaaacaatctaggcatctattctatttaaaatgcatcccttcccttcaataagttgctgattttggctggaaccaaactt-tttttttcttcttccaattccgtttttgatgtcagaataacttctattaatttcatGTGCAAATATGTAAGAGATC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30451113 183 + 171630274 gtatgtttatgcggttcattct---tcaagtgattgtcaaataggctaggcatctatt-----taaaatgtatcccttccctccaataaattactgctttcgactggaaccaaac-a--ttttttcttcttccaattccctttctgatgtcagaataacttttactaatttcatgtgcaaatatgtaagagatc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           262774 186 +    515838 -tatgtttatgtggttcattcttcatcaagtgattatcaaataagctaggcatctatt-----taaaatgtatcccttcccttcaataaattactgctttcgactggaaccaaac-a-tttttttcgtcttccaattccctttctgatgtcagaataacttcttctaatttcatGTGCAAATATGTAAGAGATC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     891805 188 -   1771730 atatgtttatgcagttcattcttcatcaagtgattgtcaaataagctagccatctatt-----taaactgtatcccttcccttcaataaattactgcttttgactggaaccaaac-gttttttttcttcttccaattccctttctgatgtcagaataacttctactaatttcattTGCAAATATGTAAGAGATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      67639 188 -    486031 gtatgtttatgtggttcattcttcatcaagtgattgtcaaataagctaggcatctatt-----taaaatgtatcccttcccttcaataaattactgcttttgactggaaccaaac-attttttttcctcttccaattccctttctgatgtcagaataacttctactaatttcatGTGCAAATATGTGAGAGATC
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297            12430 2497 +     53444 I
e proCoq1.NW_012149775v1     152422 1536 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           300882 3175 +  18854210 I

a score=3977214.000000
s hg38.chr6_GL000254v2_alt  1473281 357 +   4827813 ATTTTATTTCatg-----atgtatgtataattgtatatgcatat---ttaataagtatattcctaaagaagagagcttccattttgactagactttgatgagactgagtaatacgcttataattttctacatctaggggttaaaaggatttattggcttcactgtccacagacttctggtgcctcatgtcacagcacacaatcttattgtgacagatctct-gacctttcactttagtctctgatgtcaggtgagttatctcagtgggtggtg------gttcctgtaagccacttctacactgagacgggtagcaataacttgactatacatgaaagtgcttatgaaccacatatcctagtaatctcaaac
s panTro5.chr6             30342715 352 + 175400573 ATTTTATTTCatg-----atgtatgtataattgtatatgtataa---ttaataagtatattcctaaagaagagaacttccattttgactagactttgatgagactgagtactacgcttataattttctacatctaggggttaaaaggatttattggcttcactgcccacagacttctggtgcctcatgtcacagcacacattcttattgtgacagatctct-gacctttc-----agtctctgatgtcaggtgagttatctcagtgggtggtg------gttcctgtaagccacttctacactgagacgggtagcaataacttgaccatacatggaagtgcttatgaaccacatgtcctagtaagctcaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30577060 352 + 173848474 ATTTTATTTCatg-----atgtatgtataattgtatatgtataa---ttaataagtatattcctaaagaagagaacttccattttgactagactttgatgagactgagtactacgcttataattttctacatctaggggttaaaaggatttattggcttcactgcccacagacttctggtgcctcatgtcacagcacacattcttattgtgacagatctct-gacctttc-----agtctctgatgtcaggtgagttatctcagtgggtggtg------gttcctgtaagccacttctacactgagacgggtagcaataacttgaccatacatggaagtgcttatgaaccacatgtcctagtaagctcaaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     284136 357 +   2037526 ATTTTATTTCatg-----atgtatgtataattgtatatgtataa---ttaataagtatattcctaaagaagagaacttccattttgactagactttgatgagactgagtactacgcttataattttctacatctaggagttaaaaggatttattggcttcactgtccacagacttctggtgcctcatgtcacagcacacattcttattgtgacagatctct-gacctttcactttagtctctgatgtcaggtgagttatctcagtgggtggtg------gttcctgtaagccacttctacactgagactggcagcaataacttgactatacatgaaagtgcttatgaaccacgtatcctagtaatctcaaac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74951130 357 + 122973662 attttatttcatg-----atgtatgtataattgtatatgtataa---ttaataagtatattcctaaagaagagaacttccattttgactaggctttgatgagactgagcactacgcttataattttctacatctaggggttaaaaggatttattggcttcactgtccacagacttctggtgcctcatgtcacagcacacattcttattgtgacagatgtct-gacctttcactttagtctctgatgtcagctgagttatctcagtgggtggtg------gttcctgtaagccacttctacactgagacgggtagcaataacttgactgtacatgaaagtgcttatgaaccacatgtcctagtaagctcaaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30829049 362 + 172585720 ATTTTATTTCatgtataattgtatgtataattgtatatgtataa---ttgttaagtatattcctaaagaagagaacttccattttgactagactttgatgagactgagtactacgcttataattttttacatctaggggttaaaaggatttattggcttcactgtccacagacttctggtgcttcatgtcacagcatacattcttattgtgacagatctcc-gacctttcactttagtctctgatgtcaggtgagttatttcagtgggtggtg------cttcctataagccacttctacactgagacaggtagcaataacttaactatacatggaaatgcttatgaaccacatgtcctagtaagctcaaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30118540 362 - 170955103 ATTTTATTTCatgtataattgtatgtataattgtatatgtataa---ttgttaagtatattcctaaagaagagaacttccattttgactagactttgatgagactgagtactacacttataattttttacatctaggggttaaaaggatttATTGGcttcactgtccacagacttctggtgcctcatgtcacagcatacattcttattgtgacagatctct-gacctttcactttagtctctgatgtcaggtgagttatttcagtgggtggtg------cttcctataagccacttctacactgagacaggtagcaataacttgactatacatggaaatgcttatgaaccacatgtcctagtaagctcaaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     367460 357 +   1495729 ATTTTATTTCatg-----acgtatgtataattgtatatgtataa---ttgttaagtatattcctaaagaagagaacttccattttgactagactttgatgagactgagtactacacttataattttttacatctaggggttaaaaggatttattggcttcactgtccacagacttctggtgcctcatgtcacagcatacattcttattgtgacagatctct-gacctttcactttagtctctgatgtcaggtgagttatttcagtgggtggtg------cttcctataagccacttctacactgagacaggtagcaataacttgactatatatggaaatgcttatgaaccacatgtcctagtaagctcaaac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     469530 357 -    863181 ATTTTATTTCatg-----atgtatgtataattgtatatgtataa---ttgttaagtatattcctaaagaagagaacttccattttgactagactttgatgagactgagtactatgcttataattttttacatctaggggttaaaaggatttattggcttcactgtccacagatttctggtgcctcatgtcacagcatacattcttattgtgacagatctct-gacctttcacttcagtctctgatgtcaggtgagttatctcagtgggtggtg------cttcctataagccacttctacactgagacaggtagcaataacttgactatatatggaaatgcttatgaaccacatgtcctagtaagctcaaac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29619203 357 -  71996105 ATTTTATTTCatg-----atatatgtataattgtatatgtataa---ttgttaagtatattcctaaagaagagaacttccattttgactagactttgatgagactgagtactacgcttataattttttacatctaggggttaaaaggatttATTGGcttcactgtccacagacttctggtgcctcatgtcacagcatacattcttattttgacagatctct-gacctttcactttagtctctgatgtcaggtgagttatctcagtgggtggtg------cttcctataagccacttctacactgagacaggtagcaataacttgactatacatggaaatgtttatgaaccacatgtcctagtaagctcaaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     329270 357 -    735854 ATTTTATTTCatg-----atgtatgtataattgtatatgtataa---ttgttaagtatattcctaaagaggagaacttccattttgactagactttgatgagactgagtactatgcttataattttttacatctaggggttaaaaggatttattggcttcactgtccacagatttctggtgcctcatgtcacagcatacattcttattgtgacagatctct-gacctttcacttcagtctctgatgtcaggtgagttatctcagtgagtggtg------cttcctataagccacttctacactgagacaggtagcaataacttgactatatatggaaatgcttatgaaccacatgtcctagtaagctcaaac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     256760 357 -   1829203 ATTTTATTTCacg-----atgtatgtataattgtatatgtataa---ttgttaggtatattcctaaagaagagaacttccattttgactagactttgatgagactgagtactacgcttataattttttacatctaggggttaaaaggatttATTGGcttcactgtccacagacttctggtgcctcatgtcacagcatacattcttattttgacagatctct-gacctttcactttagtctctgatgtcaggtgagttatctcagtgggtggtg------cttcctataagccacttctacactgagacaggtagcaataacttgactatacatggaaatgcttatgaaccacatgtcctagtaagctcaaac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30451296 360 + 171630274 attttatttcatg-----atgtatgtataattatatatgtataattgttgttaagtatattcctaaagaagaggacttccattttgattcgactttgatgagactgagttctatgcttgtaattttctacatctaggggttaaaaggatttattagcttcactgtccacagacttctggtgcctcatgtgacagcacccattcttatcctgacagatttct-gaccttgcactttagtctctgatgtcaggtgagttgtctcagtgggcggtg------gttcctgtaagccacttctacactgagacaggtagcaataacttggctatacatgcaagtgcttatgagccacatgtcctcgtaagctcaacc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           262960 356 +    515838 ATTTTATTTCatg-----atgtatgtataattatatatgtataa---ttgttaaatatattcctaaagaagaggacttccattgtgattcaactttgatgagactgagttctatgcttataattttctacatctaggggttaagaggatttattggcttcaccgtccacagacttctggtgcttcatgtcatagcacccattcttatcctgacagatttct-gaccttgcactttagtctctgatgtcaggtgagttgtctcagtgggtggtg------gttcctgtaagccacgtctacactgagacaggtagcaataa-ttgactatacatgcaagtgtttatgaaccacatgtcctagtaagctcaacc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     891993 355 -   1771730 ATTTCATTTCatg-----ttgtatgtacaattatatatgcataa---ttgttaggtacattcctaaagaagaggacttctattgtgattcgactttgatgagactgagttctatgcttataattttctacatctaggggttaaaaggatttattggcttcactgtccacagacttctggtgcctcacgtcacagcacccattcttatcctgacagatttct-gaccttgcactttagtctctgatgtcaggtgagttgtctcagtgggtggtg------gttcctgtaagccacttctacactgagacaggtagcaataa--cgactatacatgcaagtgtttatgaaccacatgtcctagtaagctcaacc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      67827 357 -    486031 ATTTTATTTCatg-----atgtatgtataattatacatgtataa---ttgttaagtatattcctaaagaagaggacttccattttgattcgactttgatgagactgagttctatgcttataattttctacacctaggggttaaaaggatttattggcttcactgtccacagacttctggtgcctcatgtcacagcacccattcttatcctgacagatttct-gaccttgcactttagtctctgatgtcaggtgagttgtctcagtgggtggtg------gttcctgtaagccacttctacactgagacaggtagcaataacttgactatacatgcaagtgcttatgaaccacatgtcctagtcagctcaacc
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     153958 360 -   1411461 ATTTTATTTCata-----atgtgtgtataattgtataagttgca---gtattaaatatattcctgaagaagagaactttcattttgactgcacttcgatgaaactgaattctacacgtatgattttctacatctaggggttaaaaggatttattggctccactgtccacagacttctggtgcctcatgtcatgagatacattcttgtcctgacaggcccatggaccttgcacgtcagtctctggtgtcaggtgagctgtctcagtgggtggtagaggctgttcctggaagccatttctatatcgaaac----agcaataacttgactatacatgtaagtgtttatgaaccgcatatcttggtacatccagac
i proCoq1.NW_012149775v1   I 1536 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297            12430 2497 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           300882 3175 +  18854210 I

a score=1485888.000000
s hg38.chr6_GL000254v2_alt  1473638 125 +   4827813 aatgtaatcccaacttaatttccccttagctagaacccccacatgctacctgatacaagagaaactgtgacagagggaagttgacgtggaa---ggagacagtaatcctaaccgtggttaaaatatgt
s panTro5.chr6             30343067 125 + 175400573 aatgtaatcccaacttaatttccccttagctagatcccccaaatgctacctgatacaagagaaactgtgacagagggaagttggcatggaa---ggagacagtaatcctaaccgtggttaaaatatgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30577412 125 + 173848474 aatgtaatcccaacttaatttccccttagctagatcccccaaatgctacctgatacaagagaaactgtgacagagggaagttggcatggaa---ggagacagtaatcctaaccgtggttaaaatatgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     284493 125 +   2037526 aatgtaatcccaacttaatttccccttagctagatcccccaactgctacctgatacaagagaaactgtgacagagggaagttgacgtggaa---ggagacagtaatcctaaccgtggttaaaatacgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74951487 125 + 122973662 aatgtaatcccaacttaatttcctcttagctagatcccccaaatgccacctgatacaagagaaactgtgacagagggaagttgacatggaa---ggagacagtaatcctaactgtagttaaaatatgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30829411 125 + 172585720 aatgtaatcccaacataatttccccttagctaaatcccccaaatgctacctgatacaagagaaactgtgacagaagaaagttggcatggaa---ggagacagtaatcctaactgtgattaaaatatgt
i rheMac8.chr4             C 0 I 313
s macFas5.chr4             30118902 125 - 170955103 aatgtaatcccaacataatttccccttagctaaatcccccaaatgctacctgatacaagagaaactgtgacagaagaaagttggcatggaa---ggagacagtaatcctaaccgtgattaaaatatgt
i macFas5.chr4             C 0 I 313
s macNem1.NW_012012100v1     367817 125 +   1495729 aatgtaatcccaacataatttccccttagctaaatcccccaaatgctacctgatacaagagaaactgtgacagaagaaagttggcatggaa---ggagacagtaatcctaaccgtgattaaaatatgt
i macNem1.NW_012012100v1   C 0 I 313
s cerAty1.NW_012002535v1     469887 125 -    863181 aatgtaatcccaacataatttccccttagctagatcccccgaatgctacctgatacaagaaaaactgtgacagagggaagttggcatggaa---ggaggcagtaatcctaaccgtgattaaaatatgt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29619560 125 -  71996105 aatgtaatcccaacttaatttccccttagctagatcccccaaatgctacctgatacaagagaaactgtgacagagggaagttggcatggaa---ggagacagtaatcctaaccgtgattaaaatatgt
i chlSab2.chr17            C 0 I 323
s manLeu1.NW_012107142v1     329627 125 -    735854 aatgtaatcccaacataatttccccttagctagatcccccgaatgctacctgatacaagaaaaactgtgacagagggaagttggcatggaa---ggaggcagtaatcctaaccgtgattaaaatatgt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     257117 124 -   1829203 aatgtaatcccaactt-atttccccttagctagatcccccaaatgctacctgatacaagagaaactgtgacagagggaagttggcacagaa---ggagacagtaatcctaactgtgattaaaatatgt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30451656 125 + 171630274 aatgtaaccccaatttaatttccccttagctagatcccccaaatgttgcctgatacaagagaaactgtgacagagggaagttggcatggaa---ggagacaatagtcctaaccgtggttaaaatatat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           263316 125 +    515838 aatgtaatcccaatttaatttccccttagctagatcccccaaaagttgcctgatacaagagaaactgtgacagaggaaagttggcacggaa---ggagacaatagtcctaaccgcggttagaatatgt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     892348 122 -   1771730 aatgtaatcccaatttaatttccccttagctagatcccccaaatgttgcctgatacaagagaaactgtgacagagggaagttggcacggaa---ggagac---agtcctaaccgtggttaaaatatgc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      68184 125 -    486031 aatgtaatcccaatttaatctccccttagctagatcccccaaatgttgcctgatacaagagaaactgtgacagagggaagttggcacggaa---ggagacaatagtcctaaccatggttaaaatatgt
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     154318 118 -   1411461 catgtaagctcaacgcacgttccccttagctagatccccaaaatgccacctgatacaatagaaactatgagaggaag---tcggagtggaa---agagacagcaatc----ctgtggttaaaatacat
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           304057 123 +  18854210 aatgtaagctgaacacaatttccccttagctagatcccccaaatgccacttgatacaagagaaattatgacagagag-----gaggtggaatagaaagacaccaatcctatctgtggttaaaatatgt
i otoGar3.GL873550         I 3175 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297            12430 2497 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=93831.000000
s hg38.chr6_GL000254v2_alt  1473763 8 +   4827813 tacttttg
s panTro5.chr6             30343192 8 + 175400573 tacttttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30577537 8 + 173848474 tacttttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     284618 8 +   2037526 tacttttg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74951612 8 + 122973662 tacttttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30829849 8 + 172585720 tacttttg
i rheMac8.chr4             I 313 C 0
s macFas5.chr4             30119340 8 - 170955103 tacttttg
i macFas5.chr4             I 313 C 0
s macNem1.NW_012012100v1     368255 8 +   1495729 tacttttg
i macNem1.NW_012012100v1   I 313 C 0
s cerAty1.NW_012002535v1     470012 8 -    863181 tacttctg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29620008 8 -  71996105 tacttttg
i chlSab2.chr17            I 323 C 0
s manLeu1.NW_012107142v1     329752 8 -    735854 tacttctg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     257241 8 -   1829203 tacttccg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30451781 8 + 171630274 tacttttg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           263441 8 +    515838 tactttta
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     892470 8 -   1771730 tactttta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      68309 8 -    486031 tacttttg
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     154436 8 -   1411461 tacatttg
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           304180 8 +  18854210 tacattta
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58090360 2309 -  94987271 I
e dasNov3.JH567297            12430 2497 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=61050.000000
s hg38.chr6_GL000254v2_alt  1473771 5 +   4827813 caaat
s panTro5.chr6             30343200 5 + 175400573 caaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30577545 5 + 173848474 caaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     284626 5 +   2037526 caaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74951620 5 + 122973662 caaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30829857 5 + 172585720 caaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30119348 5 - 170955103 caaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     368263 5 +   1495729 caaag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     470020 5 -    863181 caaat
i cerAty1.NW_012002535v1   C 0 I 311
s chlSab2.chr17            29620016 5 -  71996105 caaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     329760 5 -    735854 caaat
i manLeu1.NW_012107142v1   C 0 I 311
s colAng1.NW_012115577v1     257249 5 -   1829203 caaat
i colAng1.NW_012115577v1   C 0 I 309
s calJac3.chr4             30451789 5 + 171630274 caaat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           263449 5 +    515838 caaat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     892478 5 -   1771730 caaat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      68317 5 -    486031 caaat
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     154444 5 -   1411461 caaat
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           304188 5 +  18854210 aaagt
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58092669 5 -  94987271 caaat
i mm10.chr17               I 2309 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            12430 2497 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=312983.000000
s hg38.chr6_GL000254v2_alt  1473776 27 +   4827813 tttacaaaacacttagcatgaccatat
s panTro5.chr6             30343205 27 + 175400573 tttacaaaacacttggcatgaccatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30577550 27 + 173848474 tttacaaaacacttggcatgaccatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     284631 27 +   2037526 tttacaaaacacttagcatgaccatat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74951625 27 + 122973662 tttacaaaacacttagcatgaccatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30829862 27 + 172585720 tttacaaaacacttagcatgaccatat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30119353 27 - 170955103 tttacaaaacacttagcatgaccatat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     368268 27 +   1495729 tttacaaaacacttagcatgaccatat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     470336 27 -    863181 tttacaaaacacttagcatgaccatat
i cerAty1.NW_012002535v1   I 311 C 0
s chlSab2.chr17            29620021 27 -  71996105 tttacaaaacacttagcatgaccatat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     330076 27 -    735854 tttacaaaacacttagcatgaccatat
i manLeu1.NW_012107142v1   I 311 C 0
s colAng1.NW_012115577v1     257563 27 -   1829203 tttacaaaacacttagcatgagcatat
i colAng1.NW_012115577v1   I 309 C 0
s calJac3.chr4             30451794 26 + 171630274 tttacaaaacacctggtatgaccatg-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           263454 26 +    515838 tttacaaaacacctggtatgaccatg-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     892483 26 -   1771730 tttacaaaacacctggtatgaccatg-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      68322 26 -    486031 tttacaaaacacctggtatgaccata-
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     154449 27 -   1411461 tttacaaaatacctagtgtgactatgt
i proCoq1.NW_012149775v1   C 0 I 95
s otoGar3.GL873550           304193 27 +  18854210 tttataaaatacttagtatcactatat
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58092674 24 -  94987271 tttacaaaaatc---agatgactgtgt
i mm10.chr17               C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            12430 2497 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=955166.000000
s hg38.chr6_GL000254v2_alt  1473803  92 +   4827813 tgaacacattgcttgga---attcc---------------agggtcttggaaagaaccagtgcaagggaTGAACTTAATGGCAGAGCTTCCTCTGCACACTTCACGACTG
s panTro5.chr6             30343232  92 + 175400573 tgaacacactgcttgga---attcc---------------acgatcttgcaaagggccagtgcaagggaTGAACTTAATGGCAGAGTTTCCTCTGCACACTTCACTACTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30577577  92 + 173848474 tgaacacattgcttgga---attcc---------------acgatcttggaaagggccagtgcaagggaTGAACTTAATGGCAGAGTTTCCTCTGCACACTTCACTACTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     284658  92 +   2037526 tgaacacattgcttgga---attcc---------------agggtcttggaaaggaccagtgcaagggaTGAACTTAATGGCAGAACTTTCTCTGCACACTTCACGACTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74951652  92 + 122973662 tgaacacattgcttgga---attcc---------------agggtcttggaaaggaccagtgcaagggaTGAACTTAATGGCAGAGCTTCCTCTGCACACTTCACGACTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30829889 107 + 172585720 tgaacacactgcttgga---attccagggtctggaattctagggtcttggaaagggccagtgcaagggatggacTTAATGGTAGAGCTTCCTCTGCACACTTCACGACTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30119380 107 - 170955103 tgaacacactgcttgga---attccagggtctggaattctagggtcttggaaagggccagtgcaagggatggacTTAATGGTAGAGCTTCCTCTGCACACTTCACGACTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     368295 107 +   1495729 tgaacacactgcttgga---attccagggtctggaattctagggtcttggaaagggccagtgcaagggatggacTTAATGGTAGAGCTTCCTCTGCACACTTCACGACTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     470363 107 -    863181 tgaacacattgcttgga---attccagagtctggaattccagggtcttggaaagggccagtgcaagggatggacTTAATGGCAGAGCTTCCTCTGCACACTTCACGACTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29620048 107 -  71996105 tgaacacattgcttgga---attccagggtctggaattccagggtcttggaaagggccagtgcaagggatggacTTAATGGCAGAGCTTCCTCTGCACACTTCACGACTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     330103 107 -    735854 tgaacacattgcttgga---attccagagtctggaattccagggtcttggaaagggccagtgcaagggatggacTTAATGGCAGAGCTTCCTCTGCACACTTCACGACTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     257590  92 -   1829203 tgaacacattgcttgga---attcc---------------agggtcttggaaagggccagtgcaagggatggacTTAATGGTAGAGCTTCCTCTGCACACTTTACGACTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30451820  92 + 171630274 tgaacacattgcttgga---attct---------------ggggccttggaaagggccggtgcaagggaTGAACTTCACAGCAGAGCTTCCTCTGCACACCTCATGATTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           263480  92 +    515838 tgaacacattgcttgga---attcc---------------agggtcttggaaagggtgggtgcaagggaTGAACTTCACAGCAGAGCTTCCTCTGCACACCTCACGGTTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     892509  92 -   1771730 tgaacacattgcttgga---attcc---------------agggccttggaaagggccggtgcaagggaTGAACTTCACAGCAGAGCTTCCTCTGCACACCTCATGATTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      68348  92 -    486031 tgaatacattgcttgga---attcc---------------agggccttggaaagggctggtgcaagggaTGAACTTCACGGCAGAGCTTCTTCTGCATACCTCACGATTG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           304220  92 +  18854210 -gaacacattgttagagtctgttgc---------------agga-ctttgaaaggaccagtgcaagGGTTAAACTTCATCATAGATCTT-CTCTGCACACCCCACTACTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58092698  84 -  94987271 -gaacacacagt---ga---atgcc----------catctagggccttagaaaacgc-agtgcaaaag-tgagCACCTTGGCTGTGGATGCCACACACAGCCA-------
i mm10.chr17               C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            12430 2497 +     53444 I
e proCoq1.NW_012149775v1     154476  95 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=542364.000000
s hg38.chr6_GL000254v2_alt  1473895 43 +   4827813 CAACAGGCTTGTCCCTGAAGTC-TCTCCGCTGGGGTCCCACTTC
s panTro5.chr6             30343324 43 + 175400573 CAACAGgattgtccctgaagtt-tctccgctggggtcccacttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30577669 43 + 173848474 CAACAGgattgtccctgaagtt-tctccgctggggtcccacttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     284750 43 +   2037526 CAACAGgattgtccctgaagtc-tctccgctagggtcccacttc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74951744 43 + 122973662 CAACAGgattgtccctgaagtc-tctccgctggggtcccacttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30829996 43 + 172585720 CAACAGgattgtccctgaagtc-tctccactggggtctcacttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30119487 43 - 170955103 CAACAGgattgtccctgaagtc-tctccactggggtcccacttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     368402 43 +   1495729 CAACAGgattgtccctgaagtc-tctccactggggtcccacttc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     470470 43 -    863181 CAACAGgattatccctgaagtc-tctccactggggtcccacttc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29620155 43 -  71996105 CAACAGGATTGTCCCTGAAGTC-TCTCCACTGGGGTCCCACTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     330210 43 -    735854 CAACAGgattatccctgaagtc-tctccactggggtcccacttc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     257682 43 -   1829203 CAACAGgattgtccctgaagtc-tctccactggggtcccacttc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30451912 43 + 171630274 CAGCAGGATTGTCTCTAGATTC-TCCCTGCTGGGGTCCCACTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           263572 43 +    515838 cagcaggattgtccctgaagtc-tctctgctggggtctcacttc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     892601 43 -   1771730 CAGCAGGATTGTCCCTGAAGTC-TCTCTGCTGGCGTCCCACTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      68440 43 -    486031 cagcaggattgtccctgaagtc-tctctgctggggtcccacttc
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     154571 43 -   1411461 CGGCAGGATTGTCTGTGAAGTC-TCTCTGCTGGGGTCCCACTTC
i proCoq1.NW_012149775v1   I 95 I 12
s otoGar3.GL873550           304312 44 +  18854210 CAGAAGGGTGGTCTCTGAAGtcttctctgctagggtcccatttc
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58092782 34 -  94987271 CGACATAA------CTCAGCTC-T---TGCCGAGCTCCTGCTTC
i mm10.chr17               C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            12430 2497 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=297876.000000
s hg38.chr6_GL000254v2_alt  1473938 29 +   4827813 AGGCTGA--CGTACTGTCTGTgt----caccgaac
s panTro5.chr6             30343367 31 + 175400573 aggctgactcttactgtctgtct----caccgaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30577712 31 + 173848474 aggctgactcttactgtctgtct----caccgaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     284793 31 +   2037526 aggctgacttgtactgtctgtct----caccgaac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74951787 31 + 122973662 aggctgactcacactgtctgtct----caccgaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30830039 31 + 172585720 aggctgagtcttactgtctgtct----caccaaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30119530 31 - 170955103 aggctgagtcttactgtctgtct----caccaaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     368445 31 +   1495729 aggctgagtcttactgtctgtct----caccaaac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     470513 31 -    863181 aggctgagtcttactgtctgtct----caccaaac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29620198 29 -  71996105 AGGCT--GTCTTACTGTCTGTCT----CACCAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     330253 31 -    735854 aggctgagtcttactgtctgtct----caccaaac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     257725 31 -   1829203 aggctgagtcttactgtctgtct----caccaaac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30451955 31 + 171630274 AGGCTGACTCTTACTGTCTGTCT----CACCAAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           263615 31 +    515838 aggctgacccttactgtctgcct----caccaaac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     892644 31 -   1771730 AGGCTGACTCCTACTGTCTGTCT----CACAGAAc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      68483 31 -    486031 aggctgactcttactgtctgtct----caccgaac
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           304356 28 +  18854210 aggctgactctcac--tctgcct----cactgtc-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58092816 21 -  94987271 --------------TGTCTAACTCCTCCCCCTAAC
i mm10.chr17               C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            12430 2497 +     53444 I
e proCoq1.NW_012149775v1     154614 12 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=1759818.000000
s hg38.chr6_GL000254v2_alt  1473967 135 +   4827813 atcactctctgcatttgctta-ccctttttgattcttccctgtgcctca----gtttggagttggaagctcataaattcccctattatagggaagtggctgattgtgtaaccctatccttttgttgaaataggtgtgtcc
s panTro5.chr6             30343398 135 + 175400573 atcactctctgcatttactta-ccctttttgattcttccctgtgcctca----gtttggagttggaagctcataaattcccctattatagggaagtggctgattgtgtaaccctatccttttgttgaaataggtgtgtcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30577743 135 + 173848474 atcactctctgcatttactta-ccctttttgattcttccctgtgcctca----gtttggagttggaagctcataaattcccctattatagggaagtggctgattgtgtaaccctatccttttgttgaaataggtgtgtcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     284824 135 +   2037526 atcactctctgcatttgctta-ccctttttgattcttccctgtgcctca----gtttggagttggaagctcataaattcccctattatagggaagtggctgattgtgtaaccctatccttttgttgaaataggtgtgtcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74951818 135 + 122973662 atcactctctgcatttgctta-ccctttttgattcttccctgtgcctca----gtttggagttggaagctcataaattcccctattacagggaagtggctgattgtgtaaccctatccttttgttgaaataggtgtgtcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30830070 136 + 172585720 atcactctctgcatttgcttacccctttttgattcttccctgtgcctca----gtttggagttggaagctcataaattcccctattacagggaagtggctgattgtgtaaccctatccttttgttgaaataggtgtgtcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30119561 136 - 170955103 atcactctctgcatttgcttacccctttttgattcttccctgtgcctca----gtttggagttggaagctcataaattcccctattacagggaagtggctgattgtgtaaccctatccttttgttgaaataggtgtgtcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     368476 136 +   1495729 atcactctctgcatttgcttacccctttttgattcttccctgtgcctca----gtttggagttggaagctcataaattcccctattacagggaagtggctgattgtgTAACCCTATCCTTTTGTTGAAATAGGTGTATCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     470544 136 -    863181 atcactctctgcatttgcttacccctttttgattcttccctgtgcctca----gtttggagttggaagctcataaattcccctattacagggaagtggctgattgtgTAACCCTATCCTTTTGTTGAAATAGGTGTGTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29620227 136 -  71996105 ATCACTCTCTGCATTTGCTTACCCCTTTTTAATTTTTCCCTGTGCCTCA----GTTTGGAGTTGGAAGCTCGTAAATTCCCCTATTACAGGGAAGTGGCTGATTGTGTAACCCTATCCTTTTGTTGAAATAGGTGTGTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     330284 136 -    735854 atcactctctgcatttgcttacccctttttgattcttccctgtgcctca----gtttggagttggaagctcataaattcccctattacagggaagtggctgattgtgtaaccctatccttttgttgaaataggtgtgtcc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     257756 136 -   1829203 gtcactctctgcatttgcttacccctttttgattcttccctgtgcctca----gtttggagttggaagctcataaattcccctattacggggaagtggctgattgtgtaaccctatccttttgttgaaataggtgtgtcc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30451986 137 + 171630274 ATCACTCTCTGCATTTGCTTA-CTCTTTTTGATTCTTCCCTGTGCCTCAGT--GTTTGCAGTTGGAAGCTCATAAATTCCCCTATTATAGGGAAGTAGCTGATTGTGTAACCTTATCCTTTTGTTGAAATAGGTGTGTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           263646 137 +    515838 atccctctctgcatttgctta-ctccttttgattcttccctgtgcctcagt--gtttgcagttggaagctcataaattcccctattatagggacgtggctgattgcgtaaccttatccttttgttgaaataggtgtgtcc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     892675 137 -   1771730 atcactctctgtatttgctta-ctctttttgattcttccctgtgcctcagt--gtttgcagttagaagctcataaattcccctattatagggaagtggctgattgtataaccttatccttttgttgaaataggtgtgtcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      68514 137 -    486031 atcactctctgcattcgctta-ctctttttgattcttccccgtgcctcagt--gtttgcagttggaagctcataaattctcctattatagggaagtggctgattgtgtaaccttatccttttgttgaaataggtgtgtcc
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     154626 135 -   1411461 GTCGCTCTCTGCGTTTGCTTA-CTTCTTTCGATTA-TCTCTGTGCTTCAGTGAGTTTGCAGTTGGAGGCTCATACATTCCCC--TTACAGGAAA-TGGTTAAATGGGAAACCTTATCCTTTTGTTGAAATTGGTGTGTCT
i proCoq1.NW_012149775v1   I 12 I 93
s otoGar3.GL873550           304384 129 +  18854210 atcactttctgcatttgctta-ctccttttgattcttctctatgcttcggtgagtttggagttggaggctcataaattcccttattacaagaaagtggttaattatgTGACCCAATCCTTCT----------GTGTGTCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58092837 131 -  94987271 -TTACTCCCTGCACTTGCCAA-CTCCTTTCGCTTCTTCTCTG-GACCCA----G--TGAGTTTGAAAGCTCATATATTGCTCTATTTCAAGGAAGTGTATAATAGCATAGCCGTATGCTTTTGTTGACACAGGTGTGTCT
i mm10.chr17               C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            12430 2497 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=980542.000000
s hg38.chr6_GL000254v2_alt  1474102 94 +   4827813 aGTTAAGTATTTACTGTAAGCCAGCCCCTCATACGCATTCCAC--------TGGGGGTGGATTCATTGCTTTCTACAACCTCGCCATATGTAATGTCCACAC
s panTro5.chr6             30343533 94 + 175400573 aGTTAAGTATTTACTGTAAGCCAGCCCCTCATATGCATTCCAC--------TTGGGATGGATTCGTTGCTTTCTACAACCTCGCCGTCTATAATGTCCACAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30577878 94 + 173848474 aGTTAAGTATTTACTGTAAGCCAGCCCCTCATATGCATTCCAC--------TTGGGATGGATTCGTTGCTTTCTACAACCTCGCCGTCTATAATGTCCACAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     284959 94 +   2037526 aGTTAAGTATTTACTGTAAGCCAGCCCCTCATACGCATTCCAC--------TGGGGGTGGATTCATTGCTTTCTACAACCTCGCCATATGTAATGTCCACAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74951953 94 + 122973662 GGTTAAGTATTTACTGTAAGCCAGCCCCTCATACACATTCCAC--------TGGGGGTGGATTCATTGCTTTCTACAACGTCGCCATATGTAATGTCCACAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30830206 95 + 172585720 aGTTAAGTGTTTACCATAAGCCAACCCCTCATACGCATTCCACT-------TTGGGATAGATTCATTGCTTTCTACAACCTCGCCATCTAAAATGTCCACAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30119697 95 - 170955103 aGTTAAGTGTTTACCATAAGCCAACCCCTCATACGCATTCCACT-------TTGGGATAGATTCATTGCTTTCTACAACCTCGCCATCTAAAATGTCCACAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     368612 95 +   1495729 AGTTAAGTGTTTACCATAAGCCAACCCCTCATACGCATTCCACT-------TTGGGATAGATTCATTGCTTTCTACAACCTCGCCATCTAAAATGTCCACAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     470680 95 -    863181 AGTTAAGTGTTCACCATAAGCCAGCCCCTCATATGCATTCCACT-------TTGGGGTGGATTCATTGCTTTCTACAACCTCGCCATCTAAAATGTCCACAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29620363 95 -  71996105 AGTTAAGTGTTTACCATAAGCCAGCCCCTCATACGCATTCCACT-------TTGGGGTGGATTCATTGCTTTCTACAACCTCGCCATCTAAAATGTCCACAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     330420 95 -    735854 aGTTAAGTGTTCACCATAAGCCAGCCCCTCATATGCATTCCACT-------TTGGGGTGGATTCATTGCTTTCTACAACCTCGCCATCTAAAATGTCCACAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     257892 95 -   1829203 aGTTAAGTGTTTACCATAAGCCAGCCCCTCATACGCATTCCACT-------TTGGGGTGGATTCATTGCTTTCTACAACCTCGCCATCTAAAATGTCCACAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30452123 94 + 171630274 AGTTAAGTATTTACTGTAAGCTAGCCCCTCATATGCATTCCGC--------TTGGGGTGGACTCATTCCTTTCCATAACCTTGCCATCTAAAATGCCCACAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           263783 94 +    515838 aGTTAAGTATTTACTGTAAGCCAGCCCCTCATAAGCATTCCGC--------TTGGGGTGGATTCAGTCCCTTCTACAACCTCGCCATCTAAAATGTTCACAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     892812 94 -   1771730 aGTTAAGTATTTACTGTAAGCCAGCCCCTCATATGCATTCCGC--------TTGGGGTGGATTCATTCATTTCTACAACCTCGCCATCTAAAATGTCCACAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      68651 94 -    486031 aGTTAAGTATTTACTGTAAGCCAGCCCCTCACACGCATTCCAC--------TTGGGGTGGATTCATTCCTTTCTACAACCTTGCCATCTAAAATGCCCACAC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           304513 93 +  18854210 ATCTAAGTACTTACAGTAAACCAGCCCCTCATACACACTCCACTC------AGAGGATGGATGCATTCCTTTCCGAAACCTCTCCATCCA-AACATCCAC--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58092968 86 -  94987271 --------------AACAAGTCAGATGATCCTACCCATTCCACTCAAGAGGTAGAGATAGA--CATATCTCTTCACAGCATCTATAGCCCAGATGTCCACAC
i mm10.chr17               C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            12430 2497 +     53444 I
e proCoq1.NW_012149775v1     154761 93 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=762285.000000
s hg38.chr6_GL000254v2_alt  1474196 68 +   4827813 TGGTCCATCTGGCTGTGCTTCTCAAGAGCAGCTGTTTTGTAGGACTTGAAATAAGGATTCCTTAACAA
s panTro5.chr6             30343627 68 + 175400573 TGGTCCATCTGGCTGTGCTTCTCAGGAGCAGCTGTTTTGTAGGACTTGAAATAAGGATTTCTTAACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30577972 68 + 173848474 TGGTCCATCTGGCTGTGCTTCTCAGGAGCAGCTGTTTTGTAGGACTTGAAATAAGGATTTCTTAACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     285053 68 +   2037526 TGGTCCATCTGGCTGCGCTTCTCAAGAGCAGCTGTTTTGTAGGACTTGAAATAAGGATTCGTTAACAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74952047 68 + 122973662 TGGTCCATCTGGCTGTGCTTCTCAGGAGCAGCTGTTTTGTAGGACTTGAAATAAGGATTCCTTAACAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30830301 68 + 172585720 GGGTCCATCTGGCTGTGCTTCTCACAAGCAGCTGTTTTGTAGGACCTGAAATAAGGATTCCTTAACAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30119792 68 - 170955103 GGGTCCGTCTGGCTGTGCTTCTCACAAGCAGCTGTTTTGTAGGACTTGAAATAAGGATTCCTTAACAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     368707 68 +   1495729 GGGTCCGTCTGGCTGTGCTTCTCACAAGCAGCTGTTTTGTAGGACTTGAAATAAGGATTCCTTAACAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     470775 68 -    863181 GGGTCCATCTGGGTGTGCTTCTCACGAGCAGCTGTTTTGTAGGACTTGAAATAAGGATTCCTTAACAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29620458 68 -  71996105 TGGTCCATCTGGCTGTGCTTCTCATGAGCAGCTGTTTTGTAGGGCTTGAAATAAGGATTCCTTAACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     330515 68 -    735854 GGGTCCATCTGGCTGTGCTTCTCACGAGCAGCTGTTTTGTAGGACTTGAAATAAGGATTCCTTAACAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     257987 68 -   1829203 TGGTCCATCTGGCTGTGCTTCTCACGAGCAGCTGTTTTGTAGGGCTTGAAATAAGGATTCCTTAACAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30452217 67 + 171630274 TGGTCCATCTGGCTGTGCTTCTCAGGAGCAACTCTTTTGTAGGACTTGAAATAAGGATTCCTTATAA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           263877 65 +    515838 TGGTTCATCTGAC--TGCTTCTCAGGAGCAAGTGTTTTGTAGGACTTGAAATAAGGATTCCTTATAA-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     892906 67 -   1771730 TGGTCCATCTGGCTGTGCTTCTCAGGAGCAACTGTTTTGTAGGACTTGAAATAAGGATTCCTTATAA-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      68745 67 -    486031 TGGTCCATCTGGCTGTGCTTCTCAGGAGCAACTGTTTTGTAGGACTTGAAATAAGGATTCATTATAA-
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     154854 68 -   1411461 TGGTTCACCTGACTGTGCTTTTCAGGAGCGGCTGTTTTTTAGGACTCAGAATAAGGATTCTTTATCAA
i proCoq1.NW_012149775v1   I 93 C 0
s otoGar3.GL873550           304606 51 +  18854210 -------------CGTTCTATCCAACAGCTA----TTTTTAGGACTCAAAATAAGGATTCTTTATCAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58093054 57 -  94987271 TGCTCCATCTG-CTGTGTTTTTTGGA------TGTCTCCTAAGACTGTAAATAAGGATTATTTA----
i mm10.chr17               C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            12430 2497 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=12215.000000
s hg38.chr6_GL000254v2_alt  1474264 2 +   4827813 CC
s panTro5.chr6             30343695 2 + 175400573 CC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30578040 2 + 173848474 CC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     285121 2 +   2037526 CC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74952115 2 + 122973662 CC
i nomLeu3.chr1a            C 0 C 0
s manLeu1.NW_012107142v1     330583 2 -    735854 cc
i manLeu1.NW_012107142v1   C 0 I 3686
s colAng1.NW_012115577v1     258055 2 -   1829203 cc
i colAng1.NW_012115577v1   C 0 I 90
s calJac3.chr4             30452284 2 + 171630274 TC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           263942 2 +    515838 TC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     892973 2 -   1771730 TC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      68812 2 -    486031 TC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     154922 2 -   1411461 CC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           304657 2 +  18854210 CC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58093111 2 -  94987271 TC
i mm10.chr17               C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            12430 2497 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I
e chlSab2.chr17            29620526 0 -  71996105 C
e cerAty1.NW_012002535v1     470843 0 -    863181 C
e macNem1.NW_012012100v1     368775 0 +   1495729 C
e macFas5.chr4             30119860 0 - 170955103 C
e rheMac8.chr4             30830369 0 + 172585720 C

a score=213791.000000
s hg38.chr6_GL000254v2_alt  1474266 51 +   4827813 TGGTGAATGCCTAATAGCCTCAATACATTTCAGGCTGTTTTAGTTTTGTTT
s panTro5.chr6             30343697 51 + 175400573 TGGGGAATGCCTAGTAGCCTCAATACATTTCAGGCTGTTTTAGTTTTGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30578042 51 + 173848474 TGGGGAATGCCTAATAGCCTCAATACATTTCAGGCTGTTTTAGTTTTGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     285123 51 +   2037526 TGGTGAATGCCTAATAGCCTCAATACATTTCAGGCTGTTTTAGTTTTGTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74952117 51 + 122973662 TGGTGAATGCGTAATAGCCTCAATACATTTCAGGCTGTTTTAGTTTTGTTT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30452286 49 + 171630274 TGATGAATGCCTAATGGCCTCAATGCATTTCAGGC--TTTTAGTTTTCTTT
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           263944 51 +    515838 TGATGGATGCCTAATAGCCTCAATACATTTCAGGCTGTTTTGGTTTTCTTT
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     892975 50 -   1771730 TGATGAATG-CTAATAGCCTCAGTACATTtcaggctgttttagttttcctt
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496901v1      68814 51 -    486031 TGATGAATGCCTAATAGCCTCAATACATTTCAGGCTGTTTTAGTTTTCTTT
i aotNan1.NW_018496901v1   C 0 I 1
s proCoq1.NW_012149775v1     154924 47 -   1411461 TGGCGAATGACTAATAGCCTCAATATATTTCAGGCCA----ATTTTTGTTT
i proCoq1.NW_012149775v1   C 0 I 1
s otoGar3.GL873550           304659 50 +  18854210 TGGTGAATGACTAATAGCCTCAATATATTTCAGGCTA-GTTATTTTTGTTT
i otoGar3.GL873550         C 0 I 245
s mm10.chr17               58093113 48 -  94987271 TAGTGAATGACTAATTACCTCAATATACTTTGTGCTAATTAGATTTTT---
i mm10.chr17               C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            12430 2497 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I
e colAng1.NW_012115577v1     258057 90 -   1829203 I
e manLeu1.NW_012107142v1     330585 3686 -    735854 I
e chlSab2.chr17            29620526  0 -  71996105 C
e cerAty1.NW_012002535v1     470843  0 -    863181 C
e macNem1.NW_012012100v1     368775  0 +   1495729 C
e macFas5.chr4             30119860  0 - 170955103 C
e rheMac8.chr4             30830369  0 + 172585720 C

a score=245369.000000
s hg38.chr6_GL000254v2_alt  1474317  60 +   4827813 ATTTGGT------------------------------------------------------TTTCGTGttttgtggtgagaacacttaaaatctactctctcagcaattttcaa
s panTro5.chr6             30343748  60 + 175400573 ATTTGGT------------------------------------------------------TTTCATGttttgtggtgagaacacttaaaatctactctcttagcaattttcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30578093  60 + 173848474 ATTTGGT------------------------------------------------------TTTCATGttttgtggtgagaacacttaaaatctactctcttagcaattttcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     285174  60 +   2037526 ATTTGGT------------------------------------------------------TTTCGTGttttgtggtgagaatacttaaaatctactctcttagcaattttcaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74952168  60 + 122973662 ATTTGGT------------------------------------------------------TTTCGTGttttgtggtgagaacacttaaaatctactctcttagcaatgttcaa
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30452336  60 + 171630274 ATTTGGT------------------------------------------------------TTTCttgttttgtgatgagaatatttaaaatctactctcttagcaattttcaa
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           263996  58 +    515838 ATTTGG--------------------------------------------------------TTCttgttttgtggtgagaacatttaaaatctactctcttagcaattttcaa
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     893026  60 -   1771730 atttggt------------------------------------------------------tttcttgttttgtggtgagaacatttaaaatctactctcttagcaattttcaa
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496901v1      68866  58 -    486031 ATTTGG--------------------------------------------------------TTCttgttttgtggtgagaacatttaaaatctactctcttagcaattttcaa
i aotNan1.NW_018496901v1   I 1 C 0
s proCoq1.NW_012149775v1     154972  58 -   1411461 atttg--------------------------------------------------------ttttttgttttgtggtgagagcacttaaggcctactctcttagcagttttcaa
i proCoq1.NW_012149775v1   I 1 I 215
s otoGar3.GL873550           304954 114 +  18854210 acttgattttccatttttgtgatactttactaagaagaatgtgtttcaactccatccagtttttttcgttttgtggtgagaacactcaaaccctactctcttagaaattttcaa
i otoGar3.GL873550         I 245 C 0
s mm10.chr17               58093161  54 -  94987271 -----GT------------------------------------------------------TTGTTTTTGTTATAGTGATAACACTTACAATCTATTCTCGT-GCACTTTAAAA
i mm10.chr17               C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            12430 2497 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I
e colAng1.NW_012115577v1     258057  90 -   1829203 I
e manLeu1.NW_012107142v1     330585 3686 -    735854 I
e chlSab2.chr17            29620526   0 -  71996105 C
e cerAty1.NW_012002535v1     470843   0 -    863181 C
e macNem1.NW_012012100v1     368775   0 +   1495729 C
e macFas5.chr4             30119860   0 - 170955103 C
e rheMac8.chr4             30830369   0 + 172585720 C

a score=4664.000000
s hg38.chr6_GL000254v2_alt  1474377 4 +   4827813 gaac
s panTro5.chr6             30343808 4 + 175400573 gaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30578153 4 + 173848474 gaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     285234 4 +   2037526 gaac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74952228 4 + 122973662 gaac
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30452396 2 + 171630274 ta--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           264054 4 +    515838 taac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     893086 4 -   1771730 taac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      68924 4 -    486031 taac
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           305068 4 +  18854210 aaat
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58093215 4 -  94987271 AGAC
i mm10.chr17               C 0 I 288
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            12430 2497 +     53444 I
e proCoq1.NW_012149775v1     155030 215 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e colAng1.NW_012115577v1     258057 90 -   1829203 I
e manLeu1.NW_012107142v1     330585 3686 -    735854 I
e chlSab2.chr17            29620526 0 -  71996105 C
e cerAty1.NW_012002535v1     470843 0 -    863181 C
e macNem1.NW_012012100v1     368775 0 +   1495729 C
e macFas5.chr4             30119860 0 - 170955103 C
e rheMac8.chr4             30830369 0 + 172585720 C

a score=330492.000000
s hg38.chr6_GL000254v2_alt  1474381 117 +   4827813 acagtgtaccattactaac--aaatcaccagaaggtacaacagatctcttgaa-gtattcctccttgaagtaactgaaactttgtatcctttgaccaacccatccccatgcccaccacgc
s panTro5.chr6             30343812 116 + 175400573 acagtgtatcattactaac--aagtcaccagaaggtacaatagatctcttgaa-gtattcctccttgaagtaactgaaactttgtatcctttgaccaa-ccatccccgtgccccccacac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30578157 117 + 173848474 acagtgtatcattactaac--aagtcaccagaaggtacaatagatctcttgaa-gtattcctccttgaagtaactgaaactttgtatcctttgaccaacccatccccgtgccccccacac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     285238 117 +   2037526 acagtgtaccattactaac--aaatcaccagaaggtacaacagatctcttgaa-gtattcctccttgaagtaactgaaactttgtatcctttgaccaacccatccccatgcccaccacac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74952232 117 + 122973662 acagtgtttcattactaac--aaatcaccagaaggtacaatagatctcttgaa-gtattcctccttgaagtaactgaaactttgtatcctttgaccaacccatccccaggccccccatgc
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30452398 114 + 171630274 acagtgaatcattactaac--aaatcaccataaggtacaatagagctcttgaa-gtattctttcttgaagtaactgaaac--tgtatcccttgaccaacccatttccatgcccc-cattg
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           264058 117 +    515838 acagtgaatcatgactaac--aagtcaccatattttacaacagagctcttgaa-gtattcttccttgaagtaactgaaactttgtatcccttgatcaatccattcccatacccctcattg
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     893090 117 -   1771730 acagtgaatcattactaac--aagtcaccataaggtacagtagagctctggaa-gtattcttccttgaagtaactgaaactttgtatcccttgaccaacccattcccatgcccctcattg
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496901v1      68928 117 -    486031 acagtgaatcatgactcac--aagtcaccataaggtacaatagagttcttgaa-gtattcttccttaaagtaactgaaactttgtatcctttgagcaacccattcccatgctccccattg
i aotNan1.NW_018496901v1   C 0 I 1
s otoGar3.GL873550           305072 105 +  18854210 gcagtacattattattaactgtagtcatt------cacaatagatctcttgaacttattgctcct--agctaactaaaatattgtatcc-ttgact--ccaacctccactgccacc----
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58093219 288 -  94987271 I
e dasNov3.JH567297            12430 2497 +     53444 I
e proCoq1.NW_012149775v1     155030 215 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e colAng1.NW_012115577v1     258057  90 -   1829203 I
e manLeu1.NW_012107142v1     330585 3686 -    735854 I
e chlSab2.chr17            29620526   0 -  71996105 C
e cerAty1.NW_012002535v1     470843   0 -    863181 C
e macNem1.NW_012012100v1     368775   0 +   1495729 C
e macFas5.chr4             30119860   0 - 170955103 C
e rheMac8.chr4             30830369   0 + 172585720 C

a score=912404.000000
s hg38.chr6_GL000254v2_alt  1474498 88 +   4827813 ccagactttggtaaccaccattgtattaatactgtctgcttctaccagttaac-ttttttacactctgagtataagtgaggtcatgctg
s panTro5.chr6             30343928 88 + 175400573 ccagactttggtaaccaccattgtattaatactgtctgcttctacgagttaac-ttctttacactccgagtataagtgaggtcatgctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30578274 88 + 173848474 ccagactttggtaaccaccattgtattaatactgtctgcttctacgagttaac-ttctttacactccgagtataagtgaggtcatgctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     285355 88 +   2037526 ccagactttggtaactaccattgtattaatactgtctgcttctaccagttaac-ttttttacactctgagtataagtgaggtcatgctg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74952349 88 + 122973662 ccagactttggtaaccaccattgtattaatactgtttgcttctacgagttaac-ttttttacactccaagtataagtgaggtcatgctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30830369 88 + 172585720 ccagactttggtaaccaccatggtattaatgctgtctgcttctacgagttaac-ttttttacactccaagtataagtgaggtcatgctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30119860 88 - 170955103 ccagactttggtaaccaccatggtattaatgctgtcagcttctacgagttaac-ttttttacactccaagtataagtgaggtcatgctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     368775 88 +   1495729 ccagactttggtaaccaccatggtattaatgctgtctgcttctacgagttaac-ttttttacactccaagtataagtgaggtcatgctg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     470843 88 -    863181 ccagactttggtaaccaccattgcattaatactgtctgcttctacgagttaac-ttttttacactccaagtataagtgaggtcatgctg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29620526 88 -  71996105 ccagactttggtaaccaccattgtattaatactgtctgcttctacgagttaac-ttttttacactccaagtataagtgaggtcatgctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     334271 88 -    735854 ccagactttggtaaccaccatggtattaatgctgtctgcttctacgagttaac-ttttttacactccaagtataagtgaggtcatgctg
i manLeu1.NW_012107142v1   I 3686 C 0
s colAng1.NW_012115577v1     258147 88 -   1829203 ccagactttggtaaccaccattgtattaatactgtctgcttctacgaattaac-ttttttacactctgagtataagtgaggtcatgctg
i colAng1.NW_012115577v1   I 90 C 0
s calJac3.chr4             30452513 88 + 171630274 accgcctttagcaaccaccactgtattaacgctatctgcttctatgggttaac-ttttttacactctgagtataagtgaggccatgctg
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           264176 83 +    515838 gcagcctttagtaaccaccattgtattaatactatctgcttctatgggttaacgttttttacactc------taagtgaggccaagctg
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     893208 88 -   1771730 acagcctttagtaaccaccactgtattaatactatctgcttctatgggttaac-ttttctacaatctgagtataagtgaggccaagctg
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496901v1      69046 88 -    486031 gcagcctttagtaaccaccactgtattaatactatctgcttctatgggttcac-ttttttacattctgagtataagtgagcccatgctg
i aotNan1.NW_018496901v1   I 1 C 0
s otoGar3.GL873550           305177 80 +  18854210 ccagcctctggtaaccaccattctac--------tctgcttctatgagtcaac-ttttttacactacacatataagtgaaatcatgcag
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58093219 288 -  94987271 I
e dasNov3.JH567297            12430 2497 +     53444 I
e proCoq1.NW_012149775v1     155030 215 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=309834.000000
s hg38.chr6_GL000254v2_alt  1474586 27 +   4827813 tattGGAGGTTGTTTCCTCCACGCGAC
s panTro5.chr6             30344016 27 + 175400573 tattGGAGGTTGTTTCCTCCACGCGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30578362 27 + 173848474 tattGGAGGTTGTTTCCTCCACGCGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     285443 27 +   2037526 tattGGAGCTTGTTTCCTCCACGCGAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74952437 27 + 122973662 tattGGACGTTGTTTCCTCCATGCGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30830457 27 + 172585720 tattGGAGGTTGTTTCCTCCACGCCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30119948 27 - 170955103 tattGGAGGTTGTTTCCTCCACGCCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     368863 27 +   1495729 tattGGAGGTTGTTTCCTCCACGCCAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     470931 27 -    863181 tattGGAGGTTGTTTCCTCCACACCAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29620614 27 -  71996105 tattGGAGGTTGTTTCCTCCACGCCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     334359 27 -    735854 tattGGAGGTTGTTTCCTCCACGCCAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     258235 27 -   1829203 tattGGAGGCTGTTTCCTCCACGCCAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30452601 27 + 171630274 tattGGAGGTTGTTCCCTCCACGCCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           264259 27 +    515838 tattGGAGGCTGTTTCCTCCACGCCAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     893296 27 -   1771730 tattGGAGGTTGTTTCCTCCATGCCAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      69134 27 -    486031 tcttGGAGGTTGTTTCCTCCACGCCAC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           305257 27 +  18854210 ttcttgAGGCTGTTTCATCCATGCCGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58093507 26 -  94987271 TGTTTGAGGTTG-TCCCTCCAGGCCAT
i mm10.chr17               I 288 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            12430 2497 +     53444 I
e proCoq1.NW_012149775v1     155030 215 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=2008328.000000
s hg38.chr6_GL000254v2_alt  1474613 161 +   4827813 TGGGTGGAATTCAGAGGTTTCTACCAATAACTCATTTCTTTCACCAGCAGCTCCCAAGGGCTC-TGCTGAGTCCCCCATGCCTCCTAAATCTGAGATCTTGAACCCCTGCTCCTCCCCAACCCTG-TTTTTCTGAGAACTGC-CTCATCAAACA-TAG---AGCATAG
s panTro5.chr6             30344043 161 + 175400573 TGGGTGGAATTCAGAGGTTTCTACCAATAACTCGTTGCTTTCACCAGCAGCTCCCAAGGGCTC-TGCTGAGTCCCCCATGCCTCCTGAATCTCAGATCTTGAACCCCTGCTCCTCCCCAACCCTG-TTTTTCTGAGAACTGC-ATCATCAAACA-TAG---AGCATAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30578389 161 + 173848474 TGGGTGGAATTCAGAGGTTTCTACCAATAACTCGTTGCTTTCACCAGCAGCTCCCAAGGGCTC-TGCTGAGTCCCCCATGCCTCCTGAATCTCAGATCTTGAACCCCTGCTCCTCCCCAACCCTG-TTTTTCTGAGAACTGC-ATCATCAAACA-TAG---AGCATAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     285470 161 +   2037526 TGGGTGGAATTCAGAGGTTTCTACCAATAACTCATTTCTTTCACCGGCAGCTCCCAAGGGCTC-TGCTGAGTCCCCCATGCCTCCTGAATCTCAGATCTTGAACCCCTGCTCCTCCCCAACCCTG-TTTTTCTGAGAACTGC-ATCATCAAACA-TAG---AGCATAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74952464 161 + 122973662 CGGGTGGAATTCAGAGGTTTCTACCAATAACTCTTTGCTTTCACCAGCAGCTCGCAAGGGCTC-TGCTGAGTCCCCCATGCCTCCTGAATCTCAGATCTTGAACCCCTGCTCCTCCCCAACCCTG-TTTTTCTGAGAACTGC-ATCATCAAACA-TAG---AGCATAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30830484 162 + 172585720 TGGGTGGAATTCAGAGGTTTCCACCAATAACTTGTTGCTTTCACCAGCAGCTCCCAAGGGCTC-TGCTGAGTCCCCCATGCCTCCTAAATCTCAGATCTTGAACCCCTGCTCCTCCCCAACCCTG-TTTTTCTGAGAACTGC-ATCATCAAACATTAG---AGCATAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30119975 162 - 170955103 TGGGTGGAATTCAGAGGTTTCCACCAATAACTTGTTGCTTTCACCAGCAGCTCCCAAGGGCTC-TGCTGAGTCCCCCATGCCTCCTAAATCTCAGATCTTGAACCCCTGCTCCTCCCCAACCCTG-TTTTTCTGAGAACTGC-ATCATcaaacattag---agcatag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     368890 163 +   1495729 TGGGTGGAATTCAGAGGTTTCCACCAATAACTTGTTGCTTTCACCAGCAGCTCCCAAGGGCTC-TGCTGAGTCCCCCATGCCTCCTAAATCTCAGATCTTGAACCCCTGCTCCTCCCCAACCCTGTTTTTTCTGAGAACTGC-ATCATCAAACATTAG---AGCATAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     470958 161 -    863181 TGGGTGGAATTCAGAGGTTTCCACCAGTAACTTGTTGCTTTCACCAGCAGCTCCCAAGGGCTC-TGCTGAGTCCCCCATGCCTCCTAAATCTCAGATCTTGAACCCCTGCTCCTCCCCAACCCTG-TTTTTCTGAGAACTGC-ATCATCAAACA-TAG---AGCATAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29620641 161 -  71996105 TGGGTGGAATTCAGAGGTTTCCACCAATAACTTGTTGCTTTCACCAGCAGCTCCCAAGGGCTC-TGCTGAGTCCCCCATGCCTCCTGAATCTCAGATCTTGAACCCCTGCTCCTCCCCAACCCTG-TTTTTCTGAGAACTGC-ATCATcaaaca-tag---agcatag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     334386 161 -    735854 TGGGTGGAATTCAGAGGTTTCCACCAATAACTTGTTGCTTTCACCAGCAGCTCCCAAGGGCTC-TGCTGAGTCCCCCATGCCTCCTAAATCTCAGATCTTGAACCCCTGCTCCTCCCCAACCCTG-TTTTTCTGAGAACTGC-ATCATCAAACA-TAG---AGCATAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     258262 161 -   1829203 TGGGTGGAATTCAGATGTTTCCACCAATAACTTGTTGTTTTCACCAGCAGCTCCCAAGGGCTC-TGCTGAGTCCCCCATGCCTCCTGAATCTCAGATCTTGAACCCCTGCTCCTCCCCAACCCTG-TTTTTCTGAGAACTGC-ATCATCAAACA-TAG---AGCATAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30452628 160 + 171630274 TGGGTGGAACTCAGAGGTTTCTACCAATAACTTGTTGCTTTCACCAGCAACTCCCAA-GGCTC-TGCTGAGTCCCCAGTGCCTCCTGAATCCCAGATCTTGAACCCCTGCTCCTCCCCAACCCTG-TTTTTCTGAGAACTCC-ATCATCAAACA-TAG---AGCATAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           264286 163 +    515838 TGGGTGGAGCTCAGAGGTTTCTACCAATAACTTGTTGCTTTCACCAGCAGCTCCCAAGGGCTC-TGCTGAGTCCCCAGTGCCTCCTGAATCCCAGATCTTGAA-CCCTGCTCCTCCCCAACCCTG-TTTTTCTGAGAATTCC-ATCATCAAACA-TAGCATAGCATAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     893323 161 -   1771730 TGGGTGGAACTCAGAGGTTTCTACCAATAACTTGTTGCTTTCACCAGCAGCTCCCAAGGGCTC-TGCTGAGTCCCCAGTGCCTCCTGAATCCCAGATCTCGAAACTCTGCTTCTCCCAAACCCTG-TTTTTCTGAGAACTCC-AACATCAAACA-TAG---AGCATAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      69161 161 -    486031 TGGGTGGAACTCAGAGGTTTCTACCAATAACTTGTTGCTTTCACCAGCAGTTCCCAAGGGCTCTTGCTGAGTCCCCAGTGCCTCCTGAATCCCAGATCTTGAA-CCCTGCTTCTCCCCAACCCTG-TTTTTCTGAGAACTCC-ATCATCAAACA-TAG---AGCATAG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     155245 161 -   1411461 TGGGTTGAATTCAGAGCTTCCCACCAAGAACTTGTTGCGTTGACTAGCAGCTCCCAAGGGCTC-CGCTGAGCCCTTCACATCTCCTGAGTCTCAGATCTTAAACCCCTGCTCCTCTCGTATCCTG-TTTTTCTGAAGACCGT-ATCATCAAACA-TAG---AGCATAG
i proCoq1.NW_012149775v1   I 215 I 486
s otoGar3.GL873550           305284 162 +  18854210 GGGGTCAAACTCAGGGGTTTCCACCAAGAACTTCTTGTATTTACTAGCAACTCTCCAGAGCtc-cgctgagttctttacatctcttgagtctcaagtcttgaacccctgccactctcttatcctg-tttttctgaggaccataattgtcaaata-tag---agcccag
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58093533 103 -  94987271 CAGGTAGAATTCAGGGGCTCCTGCCAA-----------------------------------------GAGCCCTCCATGTCTCCTGAGTCCCAA-----GAG-------------CTACCTCAT-TTTTTCCGAGATCTGT-ATGCTCAAATT-TAG---AGCCTCA
i mm10.chr17               C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            12430 2497 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=423711.000000
s hg38.chr6_GL000254v2_alt  1474774 41 +   4827813 CAACTTTC---------------------CTGAGATTTCTCTAAATTTCCTCTTATTCAGGT
s panTro5.chr6             30344204 41 + 175400573 CACCTTTC---------------------CTGAGATTTCTCTAAATTTCCTCTTATTCAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30578550 41 + 173848474 CACCTTTC---------------------CTGAGATTTCTCTAAATTTCCTCTTATTCAAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     285631 40 +   2037526 CAACTTTC---------------------CTGAGATTTCTCT-AACTTCCTCTTATTCAAGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74952625 41 + 122973662 CACCTTTC---------------------CTGTGATTTCTCTAAATTTCCTCTTACTCAAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30830646 41 + 172585720 CACCTTCC---------------------CTGTGATTTCTCTAAATTTCCTTTCACTCAAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30120137 41 - 170955103 caccttcc---------------------ctgtgatttctctaaatttcctttcactcaagt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     369053 41 +   1495729 CACCTTCC---------------------CTGTGATTTCTCTAAATTTCCTTTCACTCAAGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     471119 41 -    863181 CACCTTCC---------------------CTGTGATTTCTCTAAATTTCCTTTCACTCAAGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29620802 41 -  71996105 cacctttc---------------------ctgtgatttctctaaatttcctttcactcaagt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     334547 41 -    735854 CACCTTCC---------------------CTGTGATTTCTCTAAATTTCCTTTCACTCAAGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     258423 41 -   1829203 CACCTTTC---------------------CTGTGATTTCTCCAAATTTCCTCTCACTCAAGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30452788 41 + 171630274 CACCTTTC---------------------CTGTGATTCCTCTAAATTTCCTCTTACTCGAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           264449 41 +    515838 CACCTTTC---------------------CTGTGACTCCTCTAAATTTCCTCTTACTCAAGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     893484 41 -   1771730 CACCTTTC---------------------CTGTGATTCCTCTAAATTTCCTCTTACTCAAGT
i cebCap1.NW_016107755v1   C 0 I 533
s aotNan1.NW_018496901v1      69322 41 -    486031 CACCTTTC---------------------CTGTGATTCCTCTAAATTTCCTCTTACTCAAGT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           305446 36 +  18854210 cagatttt---------------------ct--gatttctctaaattgcctctcactca---
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58093636 62 -  94987271 TATCTTTCTGTGGTTTTCCTCATATCTTTCTGTGGTTTTCCTAAGTGCTCTCTGGATTGTGT
i mm10.chr17               C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            12430 2497 +     53444 I
e proCoq1.NW_012149775v1     155406 486 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=46957.000000
s hg38.chr6_GL000254v2_alt  1474815 5 +   4827813 --CACTG
s panTro5.chr6             30344245 5 + 175400573 --CACTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30578591 5 + 173848474 --CACTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     285671 5 +   2037526 --CACTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74952666 5 + 122973662 --CACTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30830687 5 + 172585720 --CACTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30120178 5 - 170955103 --cactg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     369094 5 +   1495729 --CACTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     471160 5 -    863181 --CACTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29620843 5 -  71996105 --cactg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     334588 5 -    735854 --CACTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     258464 5 -   1829203 --CACCG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30452829 5 + 171630274 --CACTG
i calJac3.chr4             C 0 I 581
s saiBol1.JH378341           264490 5 +    515838 --CACTG
i saiBol1.JH378341         C 0 I 552
s cebCap1.NW_016107755v1     894058 5 -   1771730 --CACTG
i cebCap1.NW_016107755v1   I 533 C 0
s aotNan1.NW_018496901v1      69363 5 -    486031 --CACTG
i aotNan1.NW_018496901v1   C 0 C 0
s mm10.chr17               58093698 5 -  94987271 AGCTC--
i mm10.chr17               C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            12430 2497 +     53444 I
e proCoq1.NW_012149775v1     155406 486 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           305482 0 +  18854210 C

a score=17160.000000
s hg38.chr6_GL000254v2_alt  1474820 2 +   4827813 TG-
s panTro5.chr6             30344250 2 + 175400573 TG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30578596 2 + 173848474 TG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     285676 2 +   2037526 TG-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74952671 2 + 122973662 TG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30830692 2 + 172585720 TG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30120183 2 - 170955103 tg-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     369099 2 +   1495729 TG-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     471165 2 -    863181 TG-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29620848 2 -  71996105 tg-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     334593 2 -    735854 TG-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     258469 2 -   1829203 TG-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30453415 2 + 171630274 TG-
i calJac3.chr4             I 581 C 0
s saiBol1.JH378341           265047 2 +    515838 TG-
i saiBol1.JH378341         I 552 C 0
s cebCap1.NW_016107755v1     894063 2 -   1771730 TG-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      69368 2 -    486031 TG-
i aotNan1.NW_018496901v1   C 0 I 559
s mm10.chr17               58093703 2 -  94987271 -GG
i mm10.chr17               C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            12430 2497 +     53444 I
e proCoq1.NW_012149775v1     155406 486 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           305482 0 +  18854210 C

a score=47665.000000
s hg38.chr6_GL000254v2_alt  1474822 6 +   4827813 --CATGAC
s panTro5.chr6             30344252 6 + 175400573 --CATGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30578598 6 + 173848474 --CATGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     285678 6 +   2037526 --CATGAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74952673 6 + 122973662 --CATGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30830694 6 + 172585720 --CATGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30120185 6 - 170955103 --catgac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     369101 6 +   1495729 --CATGAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     471167 6 -    863181 --CATGAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29620850 6 -  71996105 --catgac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     334595 6 -    735854 --CATGAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     258471 6 -   1829203 --CATGAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30453417 6 + 171630274 --TATAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           265049 6 +    515838 --TATAAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     894065 6 -   1771730 --TATGAT
i cebCap1.NW_016107755v1   C 0 C 0
s mm10.chr17               58093705 8 -  94987271 TATTCAAC
i mm10.chr17               C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            12430 2497 +     53444 I
e proCoq1.NW_012149775v1     155406 486 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           305482 0 +  18854210 C
e aotNan1.NW_018496901v1      69370 559 -    486031 I

a score=1084920.000000
s hg38.chr6_GL000254v2_alt  1474828 102 +   4827813 AGATTGACTGCTTGATTCCTGGAAGTCTAGGGATAAAAAGTATTGAGTGCTGGTCTAAAGGACAGGTTTCAGCAGAGGACACAATCTCAGGgcagacaactt
s panTro5.chr6             30344258 102 + 175400573 AGATTGACTGCTTGATTCCTGGAAGTCTAGGGATTAAAAATATTGAGTGCTGGGCTAGAGGACAGGTTTCAGCAGAGGACACAATCTCAGAgcagacaactt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30578604 102 + 173848474 AGATTGACTGCTTGATTCCTGGAAGTCTAGGGATTAAAAATATTGAGTGCTGGGCTAGAGGACAGGTTTCAGCAGAGGACACAATCTCAGAgcagacaactt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     285684 102 +   2037526 AGATTGACTGCTTGATTCCTGGAAGTCTAGGGATAAAAAGTATTGAGTGCTGGGCTAGAGGACAGGTTTCAGCAGAGGACACAATCTCAGAgcagacaactt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74952679  98 + 122973662 AGAT----TGCTTGATTCCTGGAAGTCTAGGGATAAAAAGTATTGAGTGCTGGGCTAGAGGACAGGTTTCAGCAGAGGACACAATCTCAGAgcagacaactt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30830700 102 + 172585720 AGATTGACTGCTTGTTTCCTGGAAGTCTAGGGATAAAAGGTATTGAGTGCTGGATTACAGAACAGGTTTCATCAGAGGACACAATCTCAGAgcagacaactt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30120191 102 - 170955103 agattgactgcttgtttcctggaagtctagggataaaaggtattgagtgctgggttacagaacaggtttcatcagaggacacaatctcagagcagacaactt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     369107 102 +   1495729 AGATTGACTGCTTGTTTCCTGGAAGTCTAGGGATAAAAGGTATTGAGTGCTgggttacagaacaggtttcatcagaggacacaatctcagagcagacaactt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     471173 102 -    863181 AGATTGACTGCTTGTTTCCTGGAAGTCTAGGGATAAAAGGTATTGAGTGCTgggttacagaacaggtttcatcagaggacacaatctcagagcagacaactt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29620856  97 -  71996105 agattgactgcttgtttcctggaagtctagggataaaaggtattgagtgctgggttacaggacaggtttcatcagaggacacaatctcagagcagac-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     334601 102 -    735854 AGATTGACTGCTTGTTTCCTGGAAGTCTAGGGATAAAAGGTATTGAGTGCTGGGTTACAGGACAGGTTTCATCAGAAGACACAATCTCAGAgcagacaactt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     258477 102 -   1829203 AGATTGACTGCTTGTTTCCTGGAAGTCTAGGGATAAAAGGTATTGAGTGCTGAGTTGCAGGACAGGTTTCATCAGAGGACACAATCTCAGAgcagacaactt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30453423 102 + 171630274 AGATTGACTGCTTATTTCCTGGAAGTCTAGGGATAAAAGGTATTGAGTGTGGGGTTAGAGGATGGGTTTCGTCAGAGGACACACTCTCAGAgcagacaactt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           265055 102 +    515838 AGATTGGCTGCTTGTTTCCTGGAAGTCTAGGGATAAAAGGtattgagtgtggggttagaggatgggtttcgtcataggacacactctcagagcagacaacgt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     894071 102 -   1771730 AGATTGACTGCTTGTTCCCTGGAAGTCTAGGGATAAAAGGTATTGAGTGTGGGGTTAGAGGATGGGTTTTGTCAGAGGACACACTCTCAGAgcagacaactt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      69929 102 -    486031 AGATTGACTGCTTGTTTCCTGGAAGTCTAGGGATAAAAGGTATTGAGTGTTGGGTTAGAGGATGGGTTTCGTCAGAGGACACACTCTCAGAgcagacaactt
i aotNan1.NW_018496901v1   I 559 C 0
s otoGar3.GL873550           305482  78 +  18854210 agatagactgctt-----------gtccaggaataga-------------tgaggtagaagacagatttcatcaaaggacacagttgcagagcagataactt
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58093713  90 -  94987271 ATGGTGGCTGGCAGTTCCCCGGAGCT------------GGTGTTTACATTTTGGACAGAGGATGGGGCTTATCAAAGGACACAATTGCAGAGCGGATAGGTT
i mm10.chr17               C 0 I 910
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            12430 2497 +     53444 I
e proCoq1.NW_012149775v1     155406 486 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=286284.000000
s hg38.chr6_GL000254v2_alt  1474930 29 +   4827813 aagtttcagtattaggcatttccgttctt-
s panTro5.chr6             30344360 29 + 175400573 aaggttcaatattaggcatttccgttctt-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30578706 29 + 173848474 aaggttcaatattaggcatttccgttctt-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     285786 29 +   2037526 aagtttcagtattaggcatttctgttctt-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74952777 29 + 122973662 aacgttcaatattaggcatttccgttctt-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30830802 29 + 172585720 aaggtccaatattagtcatttcctttctt-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30120293 29 - 170955103 aaggtccaatattagtcatttcctttctt-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     369209 29 +   1495729 aaggtccaatattagtcatttcctttctt-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     471275 29 -    863181 aaggtccaatattagtcatttcctttctt-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29620953 29 -  71996105 aaggtccaatattagtcatttcctttctt-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     334703 29 -    735854 aaggtccaatattagtcatttcctttctt-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     258579 29 -   1829203 aaggtccaatattagtcatttcctttctt-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30453525 29 + 171630274 aaggttcagtattaggcatttctgttctt-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           265157 29 +    515838 aaggttcagtattaggcatttctgttctt-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     894173 29 -   1771730 aaggctcagtattaggcatttctgttctt-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      70031 29 -    486031 aaggttcagtattaggcatttctgttctt-
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           305560 30 +  18854210 aaaattcactattaggtatttctgttttta
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58093803 910 -  94987271 I
e dasNov3.JH567297            12430 2497 +     53444 I
e proCoq1.NW_012149775v1     155406 486 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=3295803.000000
s hg38.chr6_GL000254v2_alt  1474959 311 +   4827813 aaacattccttcactatttctgcc-caagacatttctcactggtaaactttcCTTGTTGGTTACCTGCCTTCTGCAGCCCTGCAGGCTC--TGTCTCTCTCCTGGG--CCACCCCTCTTCCTCTT-ACACAGTTTTATGCTCCCCTTCCCTTCTCTTTCCTTCC---------ATCTTCAGTCTACATATTTCACGGCTAGCTTTCCACAGCCAGATGTTTCTTGCCCTGAGGAATTATGCTATCAG--TTTTTAAGCCACCGTTTAAAAGACGG---TTGCCAGTGCCCTAGAGTCTTGGCAACAATGCTCCACCTTCCGGAGGTGA---AG-C
s panTro5.chr6             30344389 313 + 175400573 aaacattccttcactatttctgcc-caagacatttctcactggtaaactttcctccTTGGTCGCCTGCCTTCTGCAGCCCTGCAGG--C--TGTCTCTCTCCTGGG--CCACCCCTCTTCCTCTTAACACAGTTTTATGCTCCCCTTCCCTTCTCTCTCCTTCC---------ATCTCCAATCTACATATTTCACGGCTAGCTTTCCACAGCCAGATGTTTCTTGCCCTGAGGAATTACGCTACCAG--TTTTTAAGCCACCATTTAAAAAACGAAATATCCCAGTGCCCTGGAGTCTTGGCAACAACGCTCCACCTTCCGGAGGTGA---AG-A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30578735 313 + 173848474 aaacattccttcactatttctgcc-caagacatttctcactggtaaactttcctccTTGGTCGCCGGCCTTCTGCAGCCCTGCAGG--C--TGTCTCTCTCCTGGG--CCACCCCTCTTCCTCTTAACACAGTTTTATGCTCCCCTTCCCTTCTCTCTCCTTCC---------ATCTCCAATCTACATATTTCACGGCTAGCTTTCCACAGCCAGATGTTTCTTGCCCTGAGGAATTACGCTACCAG--TTTTTAAGCCACCATTTAAAAAACGAAATATCCCAGTGCCCTGGAGTCTTGGCAACAACGCTCCACCTTCCGGAGGTGA---AG-A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     285815 313 +   2037526 aaacattccttcactagttctgcc-caagacatttctcactggtaaactttcCTTGTTGGTTACCTGCCTTCTGCAGCCCTGCAGGCTC--TGTCTCTCTCCTGGG--CCACCCCTCTTCCTCTT-ACACAGTTTTATG-TCCCCTTCCCTTCTCTTTCCTTCC---------ATCTTCAATCTACATATTTCACGGCTAGCTTTCCACAGCCAGATGTTTCTTGCCCTGAGGAATTATGCTACCAG--TTTTTAAGCCACCATTTAAAAAACGAAATATCCCAGTGCCCTAGAGTCTTGGCAACAATGCTCCACCTTCCGGAGGTGA---AG-A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74952806 310 + 122973662 aaacattccttcactatttctgcc-caagacatttctcactggtaaattttcctccttggtcgcctgccttctgcagccttgcaggctc--tg----tctcctggg--ccacccctcttcctctt-acacagttttatgctccccttcccttctctctccttcc---------atctccAATCTACATATTTCACGGCTAGCTTTCCACAGCCAGATGTTTCTTGCCCTGAGGAATTACGCTACCAG--TTTTTAAGCCACCATTTAAAAAACGAAATATCCCAGTGCCCTAGGGTCTTGGCAACAATGCTCCAACTTCCGGAGGTGA---AG-A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30830831 314 + 172585720 aaacattcctttgctatttctgcc-caagacatttctcactggtaaactttcctccTTGGTCGCCTGCCTTCTGCAGCCCCGCAGGCTC--TGTCTCTCTCCTGGG--CCACCCCTCTTCCTCTT-ACACAGTTTTATGTTCCCCTTCCCTTCTCTCTCCTTCC---------ATCTCCAATCTACATATTTCATGACTAGCTTTTCACAGTCAGATGTTTGTTGCCCTGAGGAATTACGCTACCAG--TTTTTAGTCCACCATTTAAAAAAAGAAATATCCCAGTGCCCTGGAGTCTTGGCAACAATGCTCCAACTTCCGGAGGTGA---AG-A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30120322 314 - 170955103 aaacattcctttgctatttctgcc-caagacatttctcactggtaaactttcctccTTGGTCGCCTGCCTTCTGCAGCCCCGCAGGCTC--TGTCTCTCTCCTGGG--CCACCCCTCTTCCTCTT-ACACAGTTTTATGTTCCCCTTCCCTTCTCTCTCCTTCC---------ATCTCCAATCTACATATTTCATGACTAGCTTTTCACAGTCAGATGTTTCTTGCCCTGAGGAATTACGCTACCAG--TTTTTAGTCCACCATTTAAAAAAAGAAATATCCCAGTGCCCTGGAGTCTTGGCAACAATGCTCCAACTTCCGGAGGTGA---AG-A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     369238 314 +   1495729 aaacattcctttgctatttctgcc-caagacatttctcactggtaaactttcctccTTGGTCGCCTGCCTTCTGCAGCCCCGCAGGCTC--TGTCTCTCTCCTGGG--CCACCCCTCTTCCTCTT-ACACAGTTTTATGTTCCCCTTCCCTTCTCTCTCCTTCC---------ATCTCCAATCTACATATTTCATGACTAGCTTTTCACAGTCAGATGTTTCTTGCCCTGAGGAATTACGCTACCAG--TTTTTAGTCCACCATTTAAAAAAAGAAATATCCCAGTGCCCTGGAGTCTTGGCAACAATGCTCCAACTTCCGGAGGTAA---AG-A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     471304 314 -    863181 aaacattcctttgctatttctgcc-caagacatttctcactgataaactttcctccTTGGTCGCCTGCCTTCTGCAGCCCCGCAGGCTC--TGTCTCTCTCCTGGG--CCACCCCTCTTCCTCTT-ACACAGTTTTATGTTCCCCTTCCCTTCTCTCTCCTTCC---------ATCTCCAATCTACATATTTCATGACTAGCTTTCCACAGCCAGATGTTTCTTGCCCTGAGGAATTACGCTATCAG--TTTTTAGTCCACCATTTAAAAAAAGAAATATCCCAGTGCCCTGGAGTCTTGGCAACAATGCTCCAACTTCCGGAGGTGA---AG-A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29620982 314 -  71996105 aaacattccttcgctatttctgcc-caagacatttctcactggtaaactttcctccTTGGTCGCCTGCCTTCTGCAGCCCCGCAGGCTC--TGTCTCTCTCCTGGG--CCACCCCTCTTCCTCTT-ACACAGTTTTATGTTCCCCTTCCCTTCTCTCTCCTTCC---------ATCTCCAATCTACATATTTCATGACTAGCTTTTCACAGCCAGATGTTTCTTGCCCTGAGGAATTACGTCACCAG--TTTTTAGTCCACCATTTAAAAAAAGAAATATCCCAGTGCCCTGGAGTCTTGGCAACAATGCTCCAACTTCCGGAGGTGA---AG-A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     334732 314 -    735854 aaacattcctttgctatttctgcc-caagacatttctcactgataaactttcctccTTGGTCGCCTGCCTTCTGCAGCCCCGCAGGCTC--TGTCTCTCTCCTGGG--CCACCCCTCTTCCTCTT-ACACAGTTTTATGTTCCCCTTCCCTTCTCTCTCCTTCC---------GTCTCCAATCTACATATTTCATGACTAGCTTTTCACAGCCAGATGTTTCTTGCCCTGAGGAATTACCCCACCAG--TTTTTAGTCCACCATTTAAAAAAAGAAATATCCCAGTGCCCTGGAGTCTTGGCAACAATGCTTCAACTTCCGGAGGTGA---AG-A
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     258608 314 -   1829203 aaacattccttcgctatttctgcc-caagacatttctcactggtaaactttcctccTTGGTTGCCTGCCTTCTGCAGCCCCGCAGGCTC--TGTCTCTCTCCTGGG--CCACCCCTCTTCCTCTT-ACACAGTTTTATGTTCCCCTTCCCTTCTCTCTCCTTCC---------ATCTCCAATCTACATATTTCATGACTAGCTTTCCACAGCCAGATGTTTCTTGCCCTGAGGAATTACGCTACCAG--TTTTTAGGCCACCATTTAAAAAAAGAAATATCCCAGTGCCCTGGAGTCTTGGCAACAATGCTCCAACTTCCGGAGGTGA---AG-A
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30453554 311 + 171630274 aaacatttcttcgctatttctgcc-caagaca--tctcactggTAAAGTTCCCTCCTTGGTCGCCTGCCTTCTGCAGCCCTGCAGGCTCTGTGCCTCTCT-TAGGG--CCACCCCTATTCCTCTT-ACACAGTTTTATGCTCCCGTTCCCTCCTCTCTCCTCCC---------AACGTCAATCTACGTATTTCACAGCTAGATTTCCACAGCCAAATATTTCTTGTCCTAGGAAATTACTCTACCAG--CTTTTAAGCCACCATT-AAAAAATGAAAAATCCCAGTGCCCT--AGTCTTGGCAGCAACGCTCCACCTTCCGGAGGTGA---ACCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           265186 311 +    515838 aaacatttcttcgctatttctgcc-caagacatttctcactggtaaacgtccctccttggtcgcctgccttctgcagccctgcaggc----tgtctctctccaggg--ccacccctcttcctctt-acacagttttatgctccgcttccctccTCTCTCCTCCC---------ATCCTCGATCTACATATTTCACAGCTAGCTTTCCACAGCCAGACATTTCTTGCCCTGGGGAATTA-TCTACCAG--TTTTTAAGCCACCATT-AAAAGAAGAAAAATCCCAGTGCCCTGGAGTCTTGGCAGCAACGCTCCACCTTCCGGAGGCGA---ACCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     894202 315 -   1771730 aaacatttcttcactatttctgcg-caagacacttctcactggTAAAGTTCCCTCCTTGGTCGCCTGCCTTGTGCAGCCCTGCAGGCTC--CGTCTCTCTCCAGGA--CCACCCTGCTTCCTCTT-ACACAGTTTTATGCGCCCCTTCCCTCCTCTCTCCTTCC---------ATCCTCAATCTACATATTTCACAGCTAGCTTTCCACAGCCAGATATTTCTTGCCCTGGAGAATTACTCTATCAG--TTTTTAAGCCACCATTAAAAAAAAGAAAAATCCCAGTGCCCTGGAGCCTTGGCAGCAACGCTCCACCTTCCAGAGGTAA---ACCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      70060 314 -    486031 aaacatttcttcactatttctgcc-caagacatttctcactggcaaacttccctccttggtcgcctgccttctgcagccctgcaggctc--tgtctctctccagggctctgtccctcttcctCTT-ACAGAGTTTTATGTTTCCCTTCCATC--CTCTCCTCCC---------ATCCTCAATCTACATATTTCACAGCTAGCTTTCCACAGCCATGTATTTCTTGCCCTGAGGAATTACTCTGCCAG--TTTTTAAGCCACCATT-AAAAAAAGAAAAATCCCAGTGCCCTGGAGTCTTGGCAGCAATGCGCCACCTTCCGGAGGTGA---ATCA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           305590 298 +  18854210 aaaaattctttggctgcttcttccacaggacattttttgctggcaagatttcctc-ttagt------cctccTGCTGCCCTGCAGGCTC--AGTCTCTCTCCTGGG--CTACCCGTCTTCCTCTT-ACACAGTTTTATG------------TCTTTCTTCCCCT---------ATCCCTGATCTACATATTCTAGGGCTAACTTCTCACAGACAGATATTTCTTGCTCTGAGGAATTACATTGCTAG---TTTTAAGTCAACATTTTTTAAAAGAAATAACCCAGTGCCCTGGAGTTTTGGCAGCTCCAGGCAGCCTTCCAAGGGTGAAAGAG-A
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            14927 288 +     53444 AAAAATGCTGTGGCTGTTCCTACC-CCAG-CACATCTGACTGCTGGTGTCTCCCT-----TCCTCTGCCTTCTGCGGCCCTGCAGGCTC--TG--TCCCTCCTGGG--CTGACCTGAGCTCTCTC------CTTTTAGCCCTCCCCTCCACCCTCCCTCTCCACTAAAAACAGAAACAAAAACTACACGCTGCAGGGCTGTCTTTGCACAGCCAGATATTTCTTACCTTGAGGAACTACATTGCAGGGtttttttattttttatttttta-atGAAAAGTGCCAGTCCC----AGCC----CAGCAGAG---------TCAGAGC----------
i dasNov3.JH567297         I 2497 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58093803 910 -  94987271 I
e proCoq1.NW_012149775v1     155406 486 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=59732.000000
s hg38.chr6_GL000254v2_alt  1475270 8 +   4827813 ---GAAATGGT
s panTro5.chr6             30344702 8 + 175400573 ---GAAGCGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30579048 8 + 173848474 ---GAAGCGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     286128 8 +   2037526 ---GAAACGGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74953116 5 + 122973662 ---GAAGC---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30831145 8 + 172585720 ---GAAGCGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30120636 8 - 170955103 ---GAAGCGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     369552 8 +   1495729 ---GAAGCGGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     471618 8 -    863181 ---GAAGCGGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29621296 8 -  71996105 ---GAAGCGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     335046 8 -    735854 ---GAAGCGGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     258922 8 -   1829203 ---GAAGCGAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30453865 8 + 171630274 ---GAAGCCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           265497 8 +    515838 ---GAAGTCAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     894517 8 -   1771730 ---GAAGTCGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      70374 8 -    486031 ---GAAGCCGT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           305888 8 +  18854210 ---GAAGCTGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58094713 8 -  94987271 ---GAAACCAA
i mm10.chr17               I 910 C 0
s dasNov3.JH567297            15215 8 +     53444 CCAGGAGA---
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e proCoq1.NW_012149775v1     155406 486 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=676861.000000
s hg38.chr6_GL000254v2_alt  1475278 51 +   4827813 -----GTCCTGTC--TTGAAAGACAGCGCCACCTACTGTCCATCAAGAGACAGCTGCC
s panTro5.chr6             30344710 51 + 175400573 -----GTCCTGTC--TTGAAAGACAGCGCCACCTACTGCCCACCAAGAGACAGCTGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30579056 51 + 173848474 -----GTCCTGTC--TTGAAAGACAGCGCCACCTACTGCCCACCAAGAGACAGCTGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     286136 51 +   2037526 -----GTCCTGTC--TTGAAAGACAGCGCCACCTACTGTCCACCAAGAGACAGCTGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74953121 46 + 122973662 ----------GTC--TTGAAAGACAGCGCCACCTACTGCCCACCAAGAGACAGCTGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30831153 51 + 172585720 -----GTCCTGTC--TTGAAAGACAGCGCCACCTACTGCCCACCAAGAGACAGCTGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30120644 51 - 170955103 -----GTCCTGTC--TTGAAAGACAGCGCCACCTACTGCCCACCAAGAGACAGCTTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     369560 51 +   1495729 -----GTCCTGTC--TTGAAAGACAGCGCCACCTACTGCCCACCAAGAGACAGCTGCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     471626 51 -    863181 -----GTCCTGTC--TTGAAAGACAGCGCCACCTACTGCCCACCAAGAGACAGCTGCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29621304 51 -  71996105 -----GTCCTGTC--TTGAAAGACAGCGCCACCTACTGCCCACCAAGAGACCGCTGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     335054 51 -    735854 -----GTCCTGTC--TTGAAAGACAGCGCCACCTACTGCCCACCAAGAGACAGCTGCG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     258930 51 -   1829203 -----GTCCTGTC--TGGAAAGACAGCGCCACCTGCTGCCCACCAAGAGACAGCTGCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30453873 51 + 171630274 -----GTCCTATC--TTGAAAGACAGCGCCACCTACTGCCCACCAAGAGACAACTGCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           265505 51 +    515838 -----GTCCTGTC--TTGAAAGACAGCGCCACCTACTGCCCACCAGGAGACAACTGCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     894525 51 -   1771730 -----TTCCTATC--TTGAAAGACAGTGCCACCTACTGCCCACCAAGAGACAACTACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      70382 51 -    486031 -----GTCCTGTC--TTGAAAGACAGCGCCACCTACTGCCCACCAAGACACAACTGCA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     155892 51 -   1411461 -----GTCCTGTC--TTGGGAGACAGCGCCACCTACTGCCCGCCGGGAGACAGCTGCC
i proCoq1.NW_012149775v1   I 486 I 225
s otoGar3.GL873550           305896 52 +  18854210 -----GTCCTGCCCACTGGGAGACAGCGCCACCTACTGCCCACT-GGACATGGCTGCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58094721 50 -  94987271 -----GTCCTAAC--TTGGGAGGCAGCACCACCTACTGTCCGTGAAGGCACAA-TGCT
i mm10.chr17               C 0 C 0
s dasNov3.JH567297            15223 48 +     53444 GCCGCGTCCTCCC--C--GCAGACGGGGCC-CCCGCTGCCCGTCGAGAGA--GCT---
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=1353006.000000
s hg38.chr6_GL000254v2_alt  1475329 133 +   4827813 --GAAAACAGCTGAATGA-----CCCTGTTCATTGCCTGTTCTGGGGAGGGTGGCAGATAATCCAGGCAAGAATAA-TTCGAAGGTACATTGAACTTGAGGTGGTGATGGAACACTTAAGAATGCACAGAAGTTTAAACTC
s panTro5.chr6             30344761 133 + 175400573 --GAAAACAGCTGAATGA-----CTCTGTCCATTTCCTGTTCTGGGGAGGGTGGCAGATAATCCAGGCAAGAATAA-TTCGAAGGTACATTGAACTTGAGGTGGTGATGGAACATTTAAGAATGCACAGAAGTTTAAACTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30579107 133 + 173848474 --GAAAACAGCTGAATGA-----CTCTGTCCATTTCCTGTTCTGGGGAGGGTGGCAGATAATCCAGGCAAGAATAA-TTCGAAGGTACATTGAACTTGAGGTGGTGATGGAACATTTAAGAATGCACAGAAGTTTAAACTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     286187 133 +   2037526 --GAAAACAGCTGAATGA-----CCCTGTTCATTGCCTGTTCTGGGGAGGGTGGCAGATAATCCAGGCAAGAATAA-TTCGAAGGTACATTGAACTTGAGGTGGTGATGGAACACTTAAGAATGCACAGAAGTTTAAACTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74953167 133 + 122973662 --GAAAACAGCTGAATGA-----CCCTGTTCATTGCCTGTTCTGGGGAGGGTGGCAGATAATCCAGGCAAGAATAA-TTAGAAGGTACATTGAACTTGAGGTGGTGATGGAACATTTAAGAATGCACAGAAGTTTAAACTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30831204 133 + 172585720 --GAAAACAACTGAATGA-----CCCTGTCCATTGTCGGTTCTGGGGAGGGTGGCAGATAATCCAGGCAAGAATAA-TTAGAAGGTACATTGAACTTGAGGTAGTGATGGAACATTTAAGAATACACAGAAGTTTAAACTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30120695 133 - 170955103 --GAAAACAACTGAATGA-----CCCTGTCCATTGTCGGTTCTGGGGAGGGTGGCAGATAATCCAGGCAAGAATAA-TTAGAAGGTACATTGAACTTGAGGTAGTGATGGAACATTTAAGAATACACAGAAGTTTAAATTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     369611 133 +   1495729 --GAAAACAACTGAATGA-----CCCTGTCCATTGTCGGTTCTGGGGAGGGTGGCAGATAATCCAGGCAAGAATAA-TTAGAAGGTACATTGAACTTGAGGTAGTGATGGAACATTTAAGAATACACAGAAGTTTAAATTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     471677 133 -    863181 --GAAAACAACTGAATGA-----CCCTGTCTATTGTCGGTTCTGGGGAGGGTGGCAGATAATCCAGGCAAGAATAA-TTAGAAGGTACATTGAACTTGAGGTAGTGATGGAACATTTAAGAATACACAGAAGTTTAAACTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29621355 133 -  71996105 --GGAAACAACTGAATGA-----CCCTATCCATTGCCGGTTCTGGGGAGGGTGGCAGATAATCCAGGCAAGAATAA-TTAGAAGGTACATTGAACTTGAGGTGGTGATGGAATATTTAAGAATGCACAGAAGTTTAAACTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     335105 133 -    735854 --GAAAACAACTGAATGA-----CCCTGTCCATTGCCGGTTCTGGGGAGGGTGGCAGATAATCCAGGCAAGAATAA-TTAGAAGGTACATTGAACTTGAGGTAGTGATGGAACATTTAAGAATGCAAAGAAGTTTAAACTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     258981 133 -   1829203 --GAAAACAACTGAATGA-----CCCTGTCTATTGCCTGTTCTGGGGAGGGTGGCAGATAATCCAGACAAGAATAA-TTAGAAGGTACATTGAACTTGAGGTGGTGATGGAACATTTAAGAATGCACAGAAGTTTAAACTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30453924 133 + 171630274 --GAAAACAGCTAAATGA-----CCCTGTCCATTGCCTGTTCTGGGCAGGGTGGCAGATAATCCAGGTAAGAGTAA-TTAGAAGGTACATTGAACTTGCGGTGGTGAtgggacatttaagaatgcacaaaagtttaaactc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           265556 132 +    515838 --GAAAACAGTTGAATGA-----CCCTGTCCATTGCCTGTTCTGGGCAGGGTGGCAGATAATCCAGGTAAGAATAA-TTAGAAGGCACATTGAACTTGCGGTGGTGATGGGACATTTAAGAATGCACAAAAGTTTAAACT-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     894576 133 -   1771730 --GAACACAGCTGAATGA-----CCCTGTCCATTGCCTGTTCTGGACAGGGTGGCAGATAATCCAGGTAAGAATAA-TTAGAAGGTACACTGAACTTGCGGTGGTGATGGGACATTTAAGAATGCACAAAAGTTTAAACTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      70433 126 -    486031 --GAAAACAGCTGAATGA-----CCCTGTCCATTGTTTGTTCTGG-------GGCAGATAATCCAGGTAAGAATAA-TTAGAAGGTACAGTGAACATGAGGTGATGATGGGACATTTAAGAATGCACAAATGTTTAAACTC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           305948  65 +  18854210 ------------------------------------------------------CAAAACACCCAGCCAAAGATAA-TCCAGA---------------------TAGTGGAATGACCAAGGATGCCCCGTAGTTTAAACTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58094771 131 -  94987271 ---AAAACATTTGACTGAAGGAGCCATGGC-----TCTATTTTGGGCACAGTTTAGCGTAATTCTGACTAGAACAATTTAGAAGGAACACTGAACTTGAGCTCATGAGATGACATATAAGGAAGCTCATA--TAAAAAGTT
i mm10.chr17               C 0 C 0
s dasNov3.JH567297            15271 121 +     53444 GGGGGCTGAGCTGAG-GA-----CCCT--------CCACCCTCGGGCGGCGGGGCAGAGCGTCCAGG--GGAAGGG-GTCGAGGGGAC--TGGACCTGAGGGGCTG-CAGGGCGCCCGGGCAAGCGCAGGAATGCAGGCTC
i dasNov3.JH567297         C 0 I 4744
e micMur3.chr6               333795 29247 + 123392446 I
e proCoq1.NW_012149775v1     155943 225 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=190930.000000
s hg38.chr6_GL000254v2_alt  1475462 17 +   4827813 AATAGGGATAGTAATAC
s panTro5.chr6             30344894 17 + 175400573 AATAGGGATAGTAATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30579240 17 + 173848474 AATAGGGATAGTAATAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     286320 17 +   2037526 AATAGGGATAGTAATAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74953300 17 + 122973662 AATAGGGATATCAATAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30831337 17 + 172585720 AATAGGGATATCAATAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30120828 17 - 170955103 AATAGGGATATCAATAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     369744 17 +   1495729 AATAGGGATATCAATAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     471810 17 -    863181 AATAGGGATATCAATAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29621488 17 -  71996105 AATAGGGATATCAATAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     335238 17 -    735854 AATAGGGATATCAATAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     259114 17 -   1829203 AATAGGGATATCAATAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30454057 17 + 171630274 aataggaatatcaagac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           265688 17 +    515838 AATAGGGATATCAAGAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     894709 17 -   1771730 AATAGGGATATCAAGAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      70559 17 -    486031 AGTAGGGATATCAAGAC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           306013 17 +  18854210 AATAGGGAGATCAAGGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58094902 17 -  94987271 GATAAGGAGATTAAAAC
i mm10.chr17               C 0 I 1994
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            15392 4744 +     53444 I
e proCoq1.NW_012149775v1     155943 225 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=841846.000000
s hg38.chr6_GL000254v2_alt  1475479  97 +   4827813 CA-AG-------------CTGGCATCGGGCCTCAGGGAGGTTACAGGATCTGCATAGTGCTAACAACTGTGCATCGG----------------------------------------------------------------TAGAATGGGAATCTGAATCCGGACACTCC--GCCTG
s panTro5.chr6             30344911  94 + 175400573 CA-AG-------------CTGGCATCGGGCCTCAGGGAGATTACAGGATCTGCATAGTGCTAACAACTGTGCATCGG----------------------------------------------------------------TAGAATGGGAATCTGAATCCGGCCACT-----TCTG
i panTro5.chr6             C 0 I 1
s panPan2.chr6             30579257  94 + 173848474 CA-AG-------------CTGGCATCGGGCCTCAGGGAGATTACAGGATCTGCATAGTGCTAACAACTGTGCATCGG----------------------------------------------------------------TAGAATGGGAATCTGAATCCGGCCACT-----TCTG
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01015528v1     286337  97 +   2037526 CA-AG-------------CTGGCATCGGGCCTCAGGGAGGTTACAGGATCTGCATAGTGCTAACAACTGTGCATCGG----------------------------------------------------------------TAGAATGGGAATTTGAATCCGGACACTCC--GCCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74953317  97 + 122973662 CA-AG-------------ATGGCATCGGGCCTCAGGGAGGTTACAGGATCTGCATAGTGCTAACAACTGTGCATCGG----------------------------------------------------------------TAGAACGGGAATCTGAATCCGGCCACTCC--GCCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30831354  97 + 172585720 TA-GG-------------ATGGCATCGGGCCTCAGGGAGGTTACAGGATACGCATAGTGCTAACAACTGTGCATCGG----------------------------------------------------------------TACAAGGGGAATCTGAATCCAGCCACTCT--GCCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30120845  97 - 170955103 TA-GG-------------ATGTCATCGGGCCTCAGGGAGGTTACAGGATACGCATAGTGCTAACAACTGTGCATCGG----------------------------------------------------------------TACAAGGGGAATCTGAATCCAGCCACTCT--GCCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     369761  96 +   1495729 TA-GG-------------ATGTCATCGGGCCTCAGGGAGGTTACAGGATAC-CATAGTGCTAACAACTGTGCATCGG----------------------------------------------------------------TACAAGGGGAATCTGAATCCAGCCACTCT--GCCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     471827  97 -    863181 TA-GG-------------ATGGCATCGGGCCTCAGGGAGGTTACAGGATACGCATAGTGCTAACAACTGTGCATCGG----------------------------------------------------------------TACAAGGAGAATCTGAATCCAGCCACTCT--GCCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29621505  97 -  71996105 TA-GG-------------ATGGCATCGGGCCTCAGGGAGGTTACAGGATCCGCATAGTGCTAACAACTGTGCATCGG----------------------------------------------------------------TACAATGGGAATCTGAATCCGGCCACTCT--GCCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     335255  97 -    735854 TA-GG-------------ATGGCATCGGGCCTCAGGGAGGTTACAGGATACGCATAGTGCTAACAACTGTGCATCGG----------------------------------------------------------------TGCAATGGGAATCTGAATCCGGCCACTCT--GCCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     259131  97 -   1829203 TA-GG-------------ATGGCATCGGGCCTCAGGGAGGTTACAGGATACGCATAGTGCTAACAACTGCGCATGGG----------------------------------------------------------------TACAATGGGAATCTGAATCCGGCCACTCT--GCCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30454074 164 + 171630274 taggg-------------atggcatccggcCTTAAGGAGGCTACAGGATCTGCATAGTGCTAACAACTGTGCAGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTGAATCCGGCCTCTCCCACCCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           265705  96 +    515838 TA-GG-------------ATGGCAT-CGGCCTCAAGGAGGCTACAGGATCTGCATAGTGCTAACAACTGTGCAGAGG----------------------------------------------------------------TAGAATGGGAATCTGAATCCGGCCTCTCC--ACCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     894726  97 -   1771730 CA-GG-------------ATAGCATCCGGTCTCAAGGAGGCTGCAGGATCTGCATAGTGCTAACAACTGTGCAGAGG----------------------------------------------------------------TAGAATGGGAATCTGAATCCGTCCTCTCC--ACCTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      70576  96 -    486031 CA-GG-------------ATGGCAT-CGGCCTCAAGGAGGCTACAGGATCTGCATAGTGCTAACAACTGTGCACAGG----------------------------------------------------------------TAGAATGGGAATCTGAATCCGGCCTCTCC--ACCTA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           306030 109 +  18854210 CA-GGAATAAGGATCTGCATGGCTTTCGTgctgaggaaggttatggcacttgcatatggttaacaactgtgcaggag----------------------------------------------------------------cagagtggggatctgaa-ccaactcttct--gcctt
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e proCoq1.NW_012149775v1     155943 225 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=5864311.000000
s hg38.chr6_GL000254v2_alt  1475576 508 +   4827813 TGAAGTCCACGTAGCTCCACCTCGCTGCACTAAGATAGAGTAGATCTCC-TTTTATGGATGATCAAATAAGTGAGAGGGAACCCAGGAGCCAGTGGAGAGGAGAATTTTAAGGAGGGGACTGCTGATGATCTAAAGTTTGAGTCATCAGTTTGGATGTGAACTGAGAAAAT-ACCGCTGGGAT--------------------------------------------------------------------------------------------------TTGAGTTTAGGACTTAGTTGGAGACCCTT-AGAGAGTGGTTTAGGGTGCCCAGCCCTGGGATAGGCATAGGAGAGTATGGAAAGACAGAAAGACATAGTCCTATCCCTCATGAAGCTAAATGTGAGCCAAAGCCAGGGAAGTTGGC-AAAAATCAAATGGTAATAAATGAGACGGTGATTTAGGAAAGAGAGATCCATGTAGAACctgcaggcccctctgacacctt--tgtgaaaattaggatggatcagttcactttcttggggccattgctg-ccctgagccagagc------------------------------------------------------------------------ccacag---------------cttggca------------------------agcaacctct-------gggctag------------gtctcagccccc
s panTro5.chr6             30345006 508 + 175400573 TGAAGTCCACGTAGCTCCACCTCCCTGCACTAAGATAGAGTAGATCTCC-TTTTATGGATGACCAAATAAGTGAGAGGGAACCCAGGAGCCAGTGGAGAGGAGAATTTTAAGGAGGGGACTGCTGATGATCTAACGTTTGAGTCATCAGTTTGGATGTGAACTGAGAACAT-ATCGCTGGGAT--------------------------------------------------------------------------------------------------TTGAGTTTAGGACTTAGTTGGAGACCCTT-AGAGAGTGGTTTAAGgtgccgagccctgggctaggcataggagagtatggaaagacagaaagacatagtcctatccctcatgaagctAAATATGAGCCAAAGCCAGGGAAGTTGGC-AAAAATCACATGGTAATAAATGAGACGGTGATTTAGGAAAGAGAGATCCATGTAGAACctgcaggcccctctgacacctt--tgtgcaaattaggatggatcagttcacttccttggggccactgctg-ccctgagccagagc------------------------------------------------------------------------ccacag---------------cttggca------------------------agcaacctgt-------ggactag------------gtctcagccccc
i panTro5.chr6             I 1 C 0
s panPan2.chr6             30579352 508 + 173848474 TGAAGTCCACGTAGCTCCACCTCCCTGCACTAAGATAGAGTAGATCTCC-TTTTATGGATGACCAAATAAGTGAGAGGGAACCCAGGAGCCAGTGGAGAGGAGAATTTTAAGGAGGGGACTGCTGATGATCTAACGTTTGAGTCATCAGTTTGGATGTGAACTGAGAACAT-ATCGCTGGGAT--------------------------------------------------------------------------------------------------TTGAGTTTAGGACTTAGTTGGAGACCCTT-AGAGAGTGGTTTAAGgtgccgagccctgggctaggcataggagagtatggaaagacagaaagacatagtcctatccctcatgaagctAAATATGAGCCAAAGCCAGGGAAGTTGGC-AAAAATCACATGGTAATAAATGAGACGGTGATTTAGGAAAGAGAGATCCATGTAGAACTTGCAGgcccctctgacacctt--tgtgcaaattaggatggatcagttcacttccttggggccactgctg-ccctgagccagagc------------------------------------------------------------------------ccacag---------------cttggca------------------------agcaacctgt-------ggactag------------gtctcagccccc
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01015528v1     286434 505 +   2037526 TGAAGTCCACGTAGCTCCACCTCGCTGCACTAAGATAGAGTAGATCTCC-TTTTATGGATGATCAAATAAGTGAGAGGGAACCCAGGAGCCAGTGGAGAGGAGAATTTTAAGGAGGGGACTGCTGATGATCTAACGTTTGAGTCATCAGTTTGGATGTGAACTGAGAAAAT-ATCGCTGGGAT--------------------------------------------------------------------------------------------------TTGAGTTTAGGACTTAGTTGGAGACCCTT-AGAGAGTGGTTTAAGGTGCC-AGCCCTGGGCTAGGCATAGGAGAGTATGGAAAGACAGAAAGACATAGTCCTATCCCTCATGAAGCTAAATGTGAGCCAAAGCCAGGGAAGTTGGC-AAAAATCAAATGGTAATAAATGAGACGGTGATTTAGGAAAGAGAGATCCATGTAGAACctgcagg-ccctctgacacctt--tgtgcaaattaggatggatcagttcactttcttggggccattgctg-ccctgagccagagc------------------------------------------------------------------------ccacag---------------cttggca------------------------aacaacctgt-------gggctag------------gtctcag-cccc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74953414 508 + 122973662 TGAAGTCCACGTAGCTCCACCTCGCTGCACTAAGATAGAGTAGATCTCC-TTTTATGGATGATCAAATAAGCGAGACGGAACCCAGGAGCCAGTGGAGAGGAGAATTTTAAGGAGGGGGCTGCTGATGATCTAACGTTCGAGTCATCAGTTTGGATGTGAACTGAGAAAAT-ATCGCTGGGAT--------------------------------------------------------------------------------------------------TTGAGTTTAGGACTTAGCTGGAGACCCTT-AGAGAGTGGTTTAAGgtgcccagccctgggctaggcataggagagtatggaaagacagaaagacatagtcctatccctcatggagctGAATATGAGCCAAAGCCAGGGAAGTTGGC-AAAAATCAAATGGTAATAAATTAGACGGTGATTTAGGAAAGAGAGATCCATGTAGAACctgcgggcccctctgacacctt--tgtgcaaattaggatggatcagttcactttcttggggccactgctg-ccctgagccagagc------------------------------------------------------------------------ccacag---------------cttggca------------------------agcaacctgt-------gggctag------------gtctcagccccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30831451 498 + 172585720 TGAAGTCCACGTAGCTCCACCTCGCTGCAC----------TAGATCTCC-TTTTATGGATGATCAAATAAGTGAGAGGGAGCCCAGGAGCCAGTGGAGAGGAGAATTTTAAGGAGGGGACTGCCGATGATCTAACGTTTGAGTCATCAGTTTGGATGTGAACTGAGAAAAT-ATCGCTGGGAT--------------------------------------------------------------------------------------------------TTGAGTTTAGGACTTAGTTGGAGACCCTT-AGAGAGTGGTTTAAGgtgcccagccgtgggctaggtacaggagagtatggaaagacagaaagacatagtcctatccctcatggagctAAATATGAGCCAAAGCCAGGGAAGTTGGC-AAAAATCAAATGGTAATAAATGAGACAGTGATTTAGGAAAGAGAGATCCATGTAGAACctgcaggcccctctgacacctt--tgtgcaaattaggatggatccgttcacttccttggggccattgctg-ctctgagccagagc------------------------------------------------------------------------ccacag---------------cttggca------------------------agcaacctgt-------gggttag------------gtctcagccccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30120942 498 - 170955103 TGAAGTCCACGTAGCTCCACCTCGCTGCAC----------TAGATCTCC-TTTTATGGATGATCAAATAAGTGAGAGGGAGCCCAGGAGCCAGTGGAAAGGAGAATTTTAAGGAGGGGACTGCCGATGATCTAACGTTTGAGTCATCAGTTTGGATGTGAACTGAGAAAAT-ATCGCTGGGAT--------------------------------------------------------------------------------------------------TTGAGTTTAGGACTTAGTTGGAGACCCTT-AGAGAGTGGTTTAAGgtgcccagccgtgggctaggtacaggagagtatggaaagacagaaagacatagtcctatccctcatggagctAAATATGAGCCAAAGCCAGGGAAGTTGGC-AAAAATCAAATGGTAATAAATGAGACAGTGATTTAGGAAAGAGAGATCCATGTAGAACctgcaggcccctctgacacctt--tgtgcaaattaggatggatccgttcacttccttggggccattgctg-ctctgagccagagc------------------------------------------------------------------------ccacag---------------cttggca------------------------agcaacctgt-------gggttag------------gtctcagccccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     369857 498 +   1495729 TGAAGTCCACGTAGCTCCACCTCGCTGCAC----------TAGATCTCC-TTTTATGGATGATCAAATAAGTGAGAGGGAGCCCAGGAGCCAGTGGAAAGGAGAATTTTAAGGAGGGGACTGCCGATGATCTAACGTTTGAGTCATCAGTTTGGATGTGAACTGAGAAAAT-ATCGCTGGGAT--------------------------------------------------------------------------------------------------TTGAGTTTAGGACTTAGTTGGAGACCCTT-AGAGAGTGGTTTAAGGTGCCCAGCCGTGGGCTAGGTACAGGAGAGTATGGAAAGACAGAAAGACATAGTCCTATCCCTCATGGAGCTAAATATGAGCCAAAGCCAGGGAAGTTGGC-AAAAATCAAATGGTAATAAATGAGACAGTGATTTAGGAAAGAGAGATCCATGTAGAACctgcaggcccctctgacacctt--tgtgcaaattaggatggatccgttcacttccttggggccattgctg-ctctgagccagagc------------------------------------------------------------------------ccacag---------------cttggca------------------------agcaacctgt-------gggttag------------gtctcagccccc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     471924 498 -    863181 TGAAGTCCACGTAGCTCCACCTCGCTGCAC----------TAGATCTCC-TTTTATGGATGATCAAATAAGTGAGAGGGAGCCCAGGAGCCAGTGGAAAGGAGAATTTTAAGGAGGGGACTGCCGATGATCTAACGTTTGAGTCATCAGTTTGGATGTGAACTGAGAAAAT-ATCGCTGGGAT--------------------------------------------------------------------------------------------------TTGAGTTTAGGACTTAGTTGGAGACCCTT-AGAGAGTGGTTTAAGgtgcccagccatgggctaggtacaggagagtatggaaagacagaaagacatagtcctatccctcatggagctAAATATGAGCCAAAGCCAGGGAAGTTGGC-AAAAATCAAATGGTAATAAATGAGACAGTGATTTAGGAAAGAGAGATCCATGTAGAACctgcaggcccctctgacacctt--tgtgcaaattaggatggatacgttcacttccttggggccattgctg-ttctgagccagagc------------------------------------------------------------------------ccacag---------------cttggca------------------------agcaacctgt-------gggttag------------gtctcagccccc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29621602 497 -  71996105 TGAAGTCCACGTAGCTCCACCTCGCTGCAC----------TAGATCTCC-TTTTATGAATGATCAAATAAGTGAGAGGGAACCCGGGAGCCAGTGGAGAGGAGAATTTTAAGGAGGGG-CCGCTGATGATCTAACGTTTGAGTCATCAGTTTGGATGTGAACTGAGAAAAT-ATCGCTGGGAT--------------------------------------------------------------------------------------------------TTGAGTTTAGGACTTAGTTGGAGACCCTT-AGAGAGTGGTTTAAGGTGCCCAGCCGTGGGCTAGGCATAGGAGAGTATGGAAAGACAGAAAGACATAGTCCTATCCCTCATGGAGCTAAATATGAGCCAAAGCCAGGGAAGTTGGC-AAAAATGAAATGGTAATAAATGGGACAGTGAGTTAGGAAAGAGAGATCCATGTAGAACctgcaggcccctctgacacctt--tgtgcaaattaggatggatccgttcacttccttggggccattgctg-ctctgagccagagc------------------------------------------------------------------------ccacag---------------cttggca------------------------agcaacctgt-------gggttag------------gtctcagccccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     335352 596 -    735854 TGAAGTCCACGTAGCTCCACCTCGCTGCAC----------TAGATCTCC-TTTTATGAATGATCAAATAAGTGAGAGGGAACCCAGGAGCCAGTGGAGAGGAGAATTTTAAGGAGGGGACTGCTGATGATCTAACGTTTGAGTCATCAGTTTGGATGTGAACTGAGAAAAT-ATCGCTGGGATTTGAGTTTAGGACTTAGTTGGAGACCCTTAGAGAGTGGTTTAAGGTGCCCAGCCGTGGGCCTGTCTCTTATACACATCTAGATGTGTATAAGAGACAGTTGAGTTTAGGACTTAGTTGGAGACCCTT-AGAGAGTGGTTTAAGGTGCCCAGCCGTGGGCTAGGTATAGGAGAGCATGGAAAGACAGAAAGACATAGTCCTATCCCTCATGGAGCTAAATATGAGCCAAAGCCAGGGAAGTTGGC-AAAAATCAAATGGTAATAAATGAGACAGTGATTTAGGAAAGAGAGATCCATGTAGAACctgcaggcccctctgacacctt--tgtgcaaattaggatggatccgttcacttccttggggccattgctg-ttctgagccagagc------------------------------------------------------------------------ccacag---------------cttggca------------------------agcaacctgt-------gggttag------------gtctcagccccc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     259228 498 -   1829203 TGAAGTCCACGTAGCTCCACCTCGCTGCAC----------TAGATCTCC-TTTTATGGATGATCAAATAAGTGAGAGGGAACCCAAGAGCCAGTGGAGAGGAGAATTTTAAGGAGGGGACTGCCGATGATCCAACGTTTGAGTCATCAGTTTGGATGTGAACCGAGAAAAT-ATCGCTGGGAT--------------------------------------------------------------------------------------------------TTGAGTTTAGGACTTAGTTGGAGACCCTT-AGAGAGTGGTTTAAGGTGCCCAGCCATGGGCTAGGTATAGGAGAGTACGGAAAGCCAGAAAGACATAGTCCTATCCCTCACGGAGCTACATATGAGCCAAAGCCAGGGAAGTTGGC-AAAAATCAAATGGTAATAAATGAGACAGTGATTTAGGAAAGAGAGATCCACGTAGAACctgcaggcccctctgacacctt--tgggcaaattaggatggatccgttcacttccttggggccactgctt-ctctgagtcagagc------------------------------------------------------------------------tcacaa---------------cttggca------------------------agcaacctgt-------gggttag------------gtctcagccccc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30454238 504 + 171630274 TGAAGTCCACATAGTTCCACATCGCTGCACCAGGATAGAGTAGATTTCC-TTTTATGCATCAGCCAATAAGTGAGAGAGAACCCAGGAGCAAGTTG---GGAGAATTTCAAGGAGGGAACTGCGGATGATCTAACGTTTGAGTCATCAGTTCAGATGTGAACCGAGAAAAT-ATCGCTGGGAT--------------------------------------------------------------------------------------------------TTGAGTTTAAGACTTAGTTGGAGACCTTT-AGTGAGTGGTTTAAGgtgcccagccctgggctaggtgtaggaaagtatgaaaagatggaaagatatagtcctatccctcatagagctAAATATGAGCCAAAGCCAGGGAAGTTGGC-AAAAATCAAATGGTAATCAATGAGACAGCGATTTTAAAAAGAGAGATACATACAG-GCctgcaggcctctctgacacctt--tgtgcaaattaggatggatccattcacttccttggggctactgctg-ctctgagccagagc------------------------------------------------------------------------ccttag---------------cttggca------------------------agtaacctat-------ggggtag------------gtcttagccccc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           265801 504 +    515838 TGAAGTCCACATAGTTCCACATTGCTGCACTAGGATGGAGTAGATTTCC-TTTCATACATCAGCAAATAAGTGAGAGAGAACCCAGGAGCAAGTTG---GGAGAATTTCAAGGAGGAGACTGCTGATGATCTAACGTTTGAGTCATCAGTTTGGATGTGAACCAAGAAAAT-ATCGCTGGGAT--------------------------------------------------------------------------------------------------TTGCGTTTAATACTTAGTTGGAGACCTTT-AGAGAGTGGTTTAAGGTGCCCAGCCCTGGGCTAGGTGTAGGAGAGTATGAAAAGATGGAAAGATATAGTCCTATATCTCATAGAGCTAAATATGAACCAAAGCCAGGGAAGCTGGC-AAAAATCAAATGGTAATAAATTAGACAGTGATTTTAAAAAGAGAGATACATATGG-ACCTTCAGgtccctctgacacctt--tgtgcaaattaggatggatccgttcacttccttggggccactgctg-ccctgagccagagc------------------------------------------------------------------------cctcag---------------cttggca------------------------agcaacctgt-------ggggtag------------gtcttagccccc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     894823 504 -   1771730 TGAAGTCCACGTAGTTCCACATCGCTGCACTAGGATAGAGTAGATTTCC-TTTTATGGATGAGCAAATAAGTGAGAGAGAACCCGGGATCAAGTTG---GGAGAATTTCAAGGAGGGGACTGCTGATGATCTAACGTTTGAGTCATCAGTTTGGATGTGAACCGAGAAAAT-ATCGCTGGGAT--------------------------------------------------------------------------------------------------TTGAGTTTAAGACTTAGTTGGAGACTGTT-AGAGAGTGGTTTAAGGTGCCCAGCCCTGGGCTAGGTGCAGAAGAGTATGAAAAGACAGAGAGATATAGTCCTATATCTCATAGAGCTAAATATAAGTCAAAGCCAGGGAAATTGGC-AAAAATCAAATGGTAATAGATGAGACAGTGATTTAGAAAACAGAGATACATATAG-ACctgcaggtccctctgacactat--tgtacaaattaggatggatccattcacttccttggggccactgctg-ccctgagccagagc------------------------------------------------------------------------cctcag---------------cttggca------------------------agcaacctgt-------ggggtag------------gtcctagccccc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      70672 507 -    486031 TGAAGTCCACGTAGCTCCACATCGCTGCACTAGGATAGAGTAGATTTCCTTTTTATGCATCAACAAATAAGTGAGAGAGAACCCAGGAGCAAGTTG---GGAGAATTTCAAGTAGGGGACTGCTGATGATCTAACGTTTGAGTCATCAGTTTGGATGTGAACCGAGAAAAT-ATCGCTGGGAT--------------------------------------------------------------------------------------------------TTGAGTTTAAGACTTAGTTGGAGACCTTT-AGAGAGTGGTTTAAGGTGCCCAGCCCTGGGCTAGGTGTAGGAGAGTATGAAAAGAAGGAAAGATATAGTCCTGTATCTCATAGAGCTAAATATGAGCCAAAGCCAGGGAAGCTGGC-AAAAATCAAATGGTAATCGATGAGGCAGTGATTTAAAAAAGAGAGATACATATAG-ACctgcaggcccctctgacacctttgtgtgcaaattaggatggatccattcacttccttggggccactgctg-ccctgagccagagc------------------------------------------------------------------------cctcag---------------cttggca------------------------agcaacctgt-------ggggtag------------gtcttagccccc
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     156168 508 -   1411461 TGAAGTCCATGTAGGTCCACCTCCCTGCCCTGGGAGTGAGTGGATCTCC-TTTTATGGATGATCAGAGAAGTGAGAGGGAACCCAAGAGCCAGTGGAGAGGAGAATTTAAAGGAGAGGACTGCTGATGACCTAACGTTTGCGTTGTCAGTGTGGATGTGAACTGAGAAAAC-ATCACCAGGAT--------------------------------------------------------------------------------------------------TTGAGTTTAGGATTTAGTTGGAGACCTTTGAGAGAGTGGCTTAAGGTGCCCATCCctgggctaggcacagaagggtatggaaagatgcagagacatagtcctgtcctgcatggagctaagtatgagccaaagtcagggaaattggc-aaaaacCAAATGTTCATAAATGAGATGGTAGTTTAGGAAAGGGAGATGCACATAG-ACctgcaggctcctccaacccctt--tgtgcaaattagtgtgggcccctcttcttcttcggggccagtgcta-ccctgagccagggt------------------------------------------------------------------------gcatgg---------------cttggca------------------------agcagactgt-------gggctgg------------gtctcagtcccc
i proCoq1.NW_012149775v1   I 225 C 0
s otoGar3.GL873550           306139 639 +  18854210 cgaagtccatttagttccacCTCCCGGTGCTAGGAATGAATGAAT-TCC-TTTTAAGGATGATCAAAGAAGTGAGAGGGAACCCAGGAGCCAATGCAGAGGATATTTTAAAGGAGAGAACTGTTGCTTATCTAATGTTTGAGTCATCAGTTCAGATGTGGATTGAGAAAATAATCACTAGGAT--------------------------------------------------------------------------------------------------TTGAGTTTAGGATTGACTTGGAGACCTTTAAGAGAGTGGCTTAAGGTGCCCAGCCCTGGGCTAGGCACAGGAGTATACAGAAAGATGGAAAGACAAAGTCCTGTCCCTCAAGGAGGTAAGTATGAGCTAAAGTCAGGGAAATTGTCAAAAAAACAAATGTTAATAAATGAAATGATAGTTTAGGAAAGGGAGATGCACATAG-ACCTGCAAGTTCCTCC-TCCCCTT--TGTGTAAATTATCATAGGCTCCTCCTCTTCTTTGGAGCCAATACTACCCCTGAGCAAGGGTCTCAGCTCCCACTCACTCACCAGCTGCTATTCTTGTTTTGTTGTTGTTGTTGtttgtttttgtttttttgagacagggtcttactatgtcacccttggcagagtgctgtgacatcacagatcacagcaacctctaactctcgggcttaagcgattctcttgcctcagcctcc
i otoGar3.GL873550         C 0 I 210
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=10424.000000
s hg38.chr6_GL000254v2_alt  1476084 1 +   4827813 a
s panTro5.chr6             30345514 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30579860 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     286939 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74953922 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30831949 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30121440 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     370355 1 +   1495729 a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     472422 1 -    863181 a
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29622099 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     335948 1 -    735854 a
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     259726 1 -   1829203 a
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30454742 1 + 171630274 a
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           266305 1 +    515838 G
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     895327 1 -   1771730 a
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      71179 1 -    486031 a
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     156676 1 -   1411461 a
i proCoq1.NW_012149775v1   C 0 I 73
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           306778 210 +  18854210 I

a score=49238.000000
s hg38.chr6_GL000254v2_alt  1476085 6 +   4827813 ttcatc
s panTro5.chr6             30345515 6 + 175400573 ttcatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30579861 6 + 173848474 ttcatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     286940 6 +   2037526 TTCatc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74953923 6 + 122973662 ttcatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30831950 6 + 172585720 ttAATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30121441 6 - 170955103 ttAATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     370356 6 +   1495729 ttAATC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     472423 6 -    863181 ttAATC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29622100 6 -  71996105 ttAATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     335949 6 -    735854 ttAATC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     259727 6 -   1829203 ttAATC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30454743 6 + 171630274 ttcatc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           266306 6 +    515838 TTTATC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     895328 6 -   1771730 tccgtc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      71180 6 -    486031 ttcatc
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e proCoq1.NW_012149775v1     156677 73 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           306778 210 +  18854210 I

a score=53584.000000
s hg38.chr6_GL000254v2_alt  1476091 4 +   4827813 AGAA
s panTro5.chr6             30345521 4 + 175400573 AGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30579867 4 + 173848474 AGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     286946 4 +   2037526 agaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74953929 4 + 122973662 AGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30831956 4 + 172585720 AGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30121447 4 - 170955103 AGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     370362 4 +   1495729 AGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     472429 4 -    863181 AGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29622106 4 -  71996105 AGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     335955 4 -    735854 AGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     259733 4 -   1829203 AGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30454749 4 + 171630274 AGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           266312 4 +    515838 AGAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     895334 4 -   1771730 AGAA
i cebCap1.NW_016107755v1   C 0 I 317
s aotNan1.NW_018496901v1      71186 4 -    486031 agaa
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     156750 4 -   1411461 AGaa
i proCoq1.NW_012149775v1   I 73 C 0
s otoGar3.GL873550           306988 4 +  18854210 AGAC
i otoGar3.GL873550         I 210 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=1282263.000000
s hg38.chr6_GL000254v2_alt  1476095 103 +   4827813 TGAAGACTGACTTGTTAGGAAAGTTTCATTCAGGAAACTGGGACTTGAGCTGGGCTTCCACTGATGTGAAGGGTTTGGAGCAGCTGTGTGAAAGAGGTAGGAG
s panTro5.chr6             30345525 103 + 175400573 TGAAGACTGGCTTGTTAggaaagtttcattcaggaaactgggacttgagctgggcttccactgatgtgaagggtttggagcagctgtgtgaaagaggtaggag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30579871 103 + 173848474 TGAAGACTGGCTTGTTAggaaagtttcattcaggaaactgggacttgagctgggcttccactgatgtgaagggtttggagcagctgtgtgaaagaggtaggag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     286950 103 +   2037526 tgaagactgacttgttaggaaagtttcattcaggaaaccgggacttgagctgggcttccactgatgtgaagggtttggagcagctgtgtgaaagaggtaggag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74953933 103 + 122973662 TGAAGACTGACTTGTTAGGAAAGTTTCATTTAGGAAACTGGGACTTGAGCTGGGCTTCCACTGATGTGAAGGGTTTGGAGCAGCTGTGTGAAAGAGGTAGGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30831960 103 + 172585720 TGAAGACTGACTTGTTACgaaagtttcattcaggaaactgggacttgagctgggcttccactgatgtgaagggtttggagcagctgtgagaaagaggtaggag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30121451 103 - 170955103 TGAAGACTGACTTGTTACGAAAGTTTCATTCAGGAAACTGGGACTTGAGCTGGGCTTCCACTGATGTGAAGGGTTTGGAGCAGCTGTGAGAAAGAGGTAGGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     370366 103 +   1495729 TGAAGACTGACTTGTTACgaaagtttcattcaggaaactgggacttgagctgggcttccactgatgtgaagggtttggagcagctgtgaggaagaggtaggAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     472433 103 -    863181 TGAAGACTGACTTGTTACgaaagtttcattcaggaaactgggacttgagctgggcttccactgatgtgaagggtttggagcagctgtgagaaagaggtaggag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29622110 103 -  71996105 TGAAGACTGACTTGTTACGAAAGTTTCATTCAGGAAACTGGGACTTGAGCTGGGCTTCCACTGATGTGAAGGGTTTGGAGCAGCTGTGAGAAAGAGGTAGGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     335959 103 -    735854 TGAAGACTGACTTGTTACgaaagtttcattcaggaaactgggacttgagctgggcttccactgatgtgaagggtttggagcagctgtgagaaagaggtaggag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     259737 103 -   1829203 TGAAGACCGACTTGTTACTaaagtttcattcaggaaacttggacttgagctgggcttccactgatgtgaagggtttggagcagctgtgagaaagaggtaggag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30454753 103 + 171630274 TGAAGGCTGACTTGTTAGGAAAGTTCAATTCAGGAAACTAGGACTTGAGCTGAGCTTCCACTGATGTGAAGTATTTGGAGCAGCTGTGAGAAATGGGTAGGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           266316 103 +    515838 TGAAGACTGACTTGTTAGGAAAGTTCAATTCAGGAAACTGGGACTTGAACTGAGCTTCCACTGATGTGAAGAGTTTGGAACAGCTGTGAGAAAGGGGTAGGAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     895655 103 -   1771730 TGAAGACTGACTTTTTAggaaagttcaattcaggaaactaggacttgagctgagcttccactgatgtgaagagtttggagcagctgtgagaaaggggtaggag
i cebCap1.NW_016107755v1   I 317 C 0
s aotNan1.NW_018496901v1      71190 103 -    486031 tgaagactgacttgttaggaaagttcgattcaggaaactacgacttgagctgagcttccactgatgtgaagagtttggagcagcagtgagaaaggggtaggAG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     156754 103 -   1411461 tgaagactgagtctttaggaaagtttcatgcaggaaactgggccttgagctgggcttcgactgatgccaagggtttagagcaactgggagaaagaggtagggg
i proCoq1.NW_012149775v1   C 0 I 72
s otoGar3.GL873550           306992 101 +  18854210 TGAAGGCTGACTTGCCAGGAAAGTTTCACACAGAAAACTGAGACTTGGACTGGGCTTCATCTGATGTGAAGGATTTAGAGTAGCTTCAAGGAAAAGGTAGG--
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=911025.000000
s hg38.chr6_GL000254v2_alt  1476198 80 +   4827813 TTAGGTCTTCCCTGCTGGGAAATGTCAAAACAGAGGCAATTAAGAGTCATAAAGGAGAGGGAAAAGACAAAAATCACCTG
s panTro5.chr6             30345628 80 + 175400573 gcaggtgttttctgctgggaaatgtcaaaacagaggcAATCAAGAGTCATAAAGGAGAGGGAGAAGACAAAAATCACCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30579974 80 + 173848474 gcaggtgttttctgctgggaaatgtcaaaacagaggcAATCAAGAGTCATAAAGGAGAGGGAGAAGACAAAAATCACCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     287053 80 +   2037526 gtaggtcttccctgctgggaaatgtcaaaacagaggcAATTAAGAGTCATAAAGGAGAGGGAGAAGACAAAAATCACCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74954036 80 + 122973662 GTGGGTCTTTTCTGCTGGGAAATGTCAAAACAGAGGCAATTAAGAGTCATAAAGGAGAGGGAGAAGACAAAAATCACCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30832063 80 + 172585720 gtaggtcttttctgctgggaaatgtcaaaacagaggcAATTAAGAGTCATAAAGGAGAGGGAGAAGACAAAAATCACCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30121554 80 - 170955103 GTAGGTCTTTTCTGCTGGGAAATGTCAAAACAGAGGCAATTAAGAGTCATAAAGGAGAGGGAGAAGACAAAAATCACCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     370469 80 +   1495729 GTAGGTCTTTTCTGCTGGGAAATGTCAAAACAGAGGCAATTAAGAGTCATAAAGGAGAGGGAGAAGACAAAAATCACCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     472536 80 -    863181 gtaggtcttttctgctgggaaatgtcaaaacagaggcAATTAAGAGTCATAAAGGAGAGGGAGAAGACAAAAATCACCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29622213 80 -  71996105 GTAGGTCTTTTCTGCTGGGAAATGTCAAAACAGAGGCAATTAAGAGTCATAGAGGAGAGAGAGAAGACAAAAATCACCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     336062 80 -    735854 gtaggtcttttctgctgggaaatgtcaaaacagaggcAATTAAGAGTCATAAAGGAGAGGGAGAAGACAAAAATCACCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     259840 79 -   1829203 gtaggtcttttctgctgggaaatgtc-aaacagaggcAATCAAGAGTCATAAAGGAGAGGGAGAAGACAAAAATCACCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30454856 80 + 171630274 GTAGGTCTTTTCTGCTGGGAAATGTCAAAACGGAGGCAATTAAGAGTCATAAAGGAAAAAGAGAAGACAAAAATCTCCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           266419 80 +    515838 GTAGGTCTTTTCTGCTGGGAAATGTCAAAACAGAGGCAATTAAGAGTCATAAAGGAGAAGGAGAAGACAAAAATCTCCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     895758 80 -   1771730 gtaggtcttttctgctgggaaatgtcaaaacagaggcAATTAAAAGTCATAAAGGAAAAGGGGAAGACAGAAATCTCCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      71293 80 -    486031 GTAGGTCTTTTCTGCTGGGAAATGTCAAAATAGAGGCAATTAAGAGTCATAAAGGAAAAGGAGAAGACAAAAATCTCCTG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           307093 78 +  18854210 --AGGCCTTTTCTGCTGGGAAGAGGCAGAGCAGAGGCAGGAAAGAAGCATAAAGGAGAGGGAGAAAATGAAAATTGCCTG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e proCoq1.NW_012149775v1     156857 72 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=112703.000000
s hg38.chr6_GL000254v2_alt  1476278 9 +   4827813 ACTCTTGGC
s panTro5.chr6             30345708 9 + 175400573 ACTCTTGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30580054 9 + 173848474 ACTCTTGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     287133 9 +   2037526 ACTCTTGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74954116 9 + 122973662 ACTCTTGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30832143 9 + 172585720 ACTCTTGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30121634 9 - 170955103 ACTCTTGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     370549 9 +   1495729 ACTCTTGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     472616 9 -    863181 ACTCTTGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29622293 9 -  71996105 ACTCTTGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     336142 9 -    735854 ACTCTTGGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     259919 9 -   1829203 ACTCTTGGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30454936 9 + 171630274 ACTCTTGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           266499 9 +    515838 ACTCTTGTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     895838 9 -   1771730 ACTCTTGTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      71373 9 -    486031 ACTCTTGTC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     156929 9 -   1411461 actcttgac
i proCoq1.NW_012149775v1   I 72 C 0
s otoGar3.GL873550           307171 9 +  18854210 TCCCTTGGC
i otoGar3.GL873550         C 0 I 430
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=1338783.000000
s hg38.chr6_GL000254v2_alt  1476287 121 +   4827813 TCCAGTATTTTTAAAGCAGGAGAAATTAGATAAGATCACTCCTTTAAAACAGTTACTGAGCATCTAATATATTCAAGGAGCTATGCCGAATAGGCTGACTCAGGGAAATAAGGACCCTGAC
s panTro5.chr6             30345717 121 + 175400573 TCCAGTATTTTTAAAGCAGGAGAAATTAGATAAGAtcactcctttaaaacagttactgagcacctaatatattcaaggagctatgctgAATAGGCTGACTCAGGGAAATAAGGACCCTGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30580063 121 + 173848474 TCCAGTATTTTTAAAGCAGGAGAAATTAGATAAGAtcactcctttaaaacagttactgagcacctaatatattcaaggagctatgctgAATAGGCTGACTCAGGGAAATAAGGACCCTGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     287142 121 +   2037526 TCCAGTATTTTTAAAGCAGGAGAAATTAGATAAGAtcactcctttaaaacagttactgagcacctaatatattcaaggagctatgccgAATAGGCTGACTCAGGGAAATAAGGACCCTGAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74954125 121 + 122973662 TCCAGTATTTTTAAAGCAGAAGAAATTAGATAAGATCCCTCCTTTAAAACAGTTATTGAGCACCTAATATATTGATGGAGCTATGCTAAATAGGCTGACTCAGGGAAATAAGGACCCTGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30832152 121 + 172585720 TCCGGTATTTTTAAAGCAGGAGAAATTCGATAAGAtcactcctttaaaacagttactgagcacctaatatattcaaggagctatgctgAATAGGCTGACTCAGGGAAATAAGGACACTGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30121643 121 - 170955103 TCCGGTATTTTTAAAGCAGGAGAAATTCGATAAGAtcactcctttaaaacagttactgagcacctaatatattcaaggagctatgctgAATAGGCTGACTCAGGGAAATAAGGACACTGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     370558 121 +   1495729 TCCGGTATTTTTAAAGCAGGAGAAATTCGATAAGAtcactcctttaaaacagttactgagcacctaatatattcaaggagctatgctgAATAGGCTGACTCAGGGAAATAAGGACACTGAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     472625 121 -    863181 TCCGGTATTTTTAAAGCAGGAGAAATTCGATAAGAtcactcctttaaaacagttactgagcacctaatatattcaaggagctatgctgAATAGGCTGACTCAGGGAAATAAGGACACTGAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29622302 121 -  71996105 TCCGGTATTTTTAAAGCAGGAGAAACTCGATAAGAtcactcctttaaaacagttactgagcacctaatatattcaaggagctatgctgAATAGGCTGACTCAGGGAAATAAGGACACTGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     336151 121 -    735854 TCCGGTATTTTTAAAGCAGGAGAAATTCGATAAGAtcactcctttaaaacagttactgagcacctaatatattcaaggagctatgctgAATAGGCTGACTCAGGGAAATAAGGACACTGAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     259928 121 -   1829203 TCCGGTATTTTTAAAGCAGGAGAAGTTCGATAAGAtcactcctttaaaacagttactgagcacctaatatattcaaggagctatgctgAATAGGCTGACTCAGGGAAATAAGGACCCTGAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30454945 121 + 171630274 TCCAATATTTTTAAAGTAGGAGAAATTAGATAAGAttactcctttaaaacagttactgagcatcaaatatatgcaaggagctctgctgAATAGACTGACTCAGGGAAGTAAGAACGCTGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           266508 121 +    515838 TCCAATATTTTTTAAGTAGGAGAAATTAAGTAAGAtcactcctttaaaacagttattgagcatctaatatatgcaaggagctatgctgAATAGACTGACTCAGGGAAATAAGAACCCTGAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     895847 121 -   1771730 TCCAATATTTTTTAAGTAGGAGAAATTAGATAAGAtcactcctttaaaacagttattgagcatctgatatatgcaaggagctatgctGAATAGACTGACTCAGGGAAATAAGAACTCTGAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      71382 119 -    486031 TCCAATATTTTTAAAGTAAGAGAAATTAGATAAGAtcactcctttaaaacagttattgagcatctaatatatgcaaggagctatactgAATAGACTGACTCA--GAAATAAGAACCCTGAC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     156938 120 -   1411461 tCCAACATTTTTAAAGCAGGTAAAATTAGGTTAGGtcactcattttaaa-aattactgagcacctagtatatgtaaggacctgtgccaaataggctgacaccggggaatgataaccctgac
i proCoq1.NW_012149775v1   C 0 I 26
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I

a score=274332.000000
s hg38.chr6_GL000254v2_alt  1476408 28 +   4827813 AGTTGCGCATTAGTTTGTAGTTTATGAA
s panTro5.chr6             30345838 28 + 175400573 AATTGCGCATTAGTTTGTAGTTTATGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30580184 28 + 173848474 AATTGCGCATTAGTTTGTAGTTTATGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     287263 28 +   2037526 AATTGCGCATTAGTTTGTAGTTTATGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74954246 28 + 122973662 AATTGCGCAGTAGTTTGTAGTTTAAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30832273 28 + 172585720 ACTTGCACATTAGTTTGTAGTTTATGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30121764 28 - 170955103 ACTTGCACATTAGTTTGTAGTTTATGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     370679 28 +   1495729 ACTTGCACATTAGTTTGTAGTTTATGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     472746 28 -    863181 ACTTGCGCATTAGTTTGTAGTTTATGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29622423 28 -  71996105 ACTTGCGCATTAGTTTGTAGTTTATGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     336272 28 -    735854 ACTTGCGCATTAGTTTGTAGTTTATGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     260049 28 -   1829203 ACTTGCGCATTAGTTTATAGTTTATGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30455066 28 + 171630274 AATCGCACATTGGTTTGTAGTTTATGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           266629 28 +    515838 AATTGCACATTGGTTTGTAGTTTATGAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     895968 28 -   1771730 AATTGCATATTGGTTTGTAGTTTATGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      71501 28 -    486031 AATTGCACATTGGTTTGTAGTTTATGAA
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e proCoq1.NW_012149775v1     157058 26 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I

a score=2463450.000000
s hg38.chr6_GL000254v2_alt  1476436 228 +   4827813 GCACATCCATTTCCAGCTATGACATTTTGTCCACTTTCTTGTAAAGGAGGCTGAAGTTGTGGCTGCCCCTGAACATGAAGCTACAAATCTCCACGATTAGGACCATAATCCAGATTCTTTGACTAGTCCAGAATTCCTTTCATTCTGACCA--------TCCTCTTCTTAAACATTTTAAAATTTAGGTAattgtttagatagatggcacatttgctggctcaaaattttaaa--aac
s panTro5.chr6             30345866 228 + 175400573 GCACATCCATTTCCAGCTATGACATTTCGTCCACTTTCTTGTAAAGGAGGCTGAAGTTGTGGCTGCCCCTGAACATGAAGCTACAAATCTCCACAATTAGGACCATAATCCAGATTCTTTGACTAGTCCAGAATTCCTTTCATTCTGACCA--------TCCTCTTCTTAAACATTTTAAAATTTAGGTAattgtttagatagatggcacatttgctggctcaaaattttaaa--aac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30580212 228 + 173848474 GCACATCCATTTCCAGCTATGACATTTCGTCCACTTTCTTGTAAAGGAGGCTGAAGTTGTGGCTGCCCCTGAACATGAAGCTACAAATCTCCACAATTAGGACCATAATCCAGATTCTTTGACTAGTCCAGAATTCCTTTCATTCTGACCA--------TCCTCTTCTTAAACATTTTAAAATTTAGGTAattgtttagatagatggcacatttgctggctcaaaattttaaa--aac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     287291 228 +   2037526 GCACATCCATTTCCAGGTATGACATTTCGTTCACTTTCTTGTAAAGGAGGCTGAAGTTGTGGCTGCCCCTGAACATGAAGCTACAAATCTCCACAATTAGGACCATAATCCAGATTCTTTGACTAGTCCAGAATTCCTTTCATTCTGACCA--------TCCTCTTCTTAAACATTTTAAAATTTAGATAATTGTTTAGATAGATGGCACATTTGCTGGCTCAAAATTTTAAA--Aac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74954274 228 + 122973662 GCACATCCATTTCCAGCTATGACATTCCGTCCACTTTCCTGTAAAGGAGGCTGAAGCTGTGGCTGCCCCTGAACATGAAGCTACAAATCTCCACAATTAGGACCATAATCCAGATTCTTTGACTAGTCCAGAATTCCTTTCATTCTGACCA--------TCCTcttcttaaacattttaaaatttgtataattgtttagatagatggcacatttactggctcaaaattttaaa--aac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30832301 228 + 172585720 GCACATCCATTTCCGGCTATGACATTTCGTCCACTTTCCTGTAAAGGAGGCGGAAGTTGTGGCTGTCCCTGAACATGAAGCTACAAATCTCCACAATTAGGACCATAATCCAGATTCTTTGTCTAGTCCAGAATTCCTTTCATTCTCACCA--------TCCTCTTCTTAAACATTTTTAAATGTAGGTAattgtttagatagatggcacacttactggctcaaaatttttaa--aac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30121792 228 - 170955103 GCACATCCATTTCCGGCTATGACATTTCGTCCCCTTTCCTGTAAAGGAGGCGGAAGTTGTGGCTGTCCCTGAACATGAAGCTACAAATCTCCACAATTAGGACCATAATCCAGATTCTTTGTCTAGTCCAGAATTCCTTTCATTCTCACCA--------TCCTCTTCTTAAACATTTTTAAATGTAGGTAattgtttagatagatggcacacttactggctcaaaatttttaa--aac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     370707 228 +   1495729 GCACATCCATTTCCGGCTATGACATTTCGTCCACTTTCCTGTAAAGGAGGCGGAAGTTGTGGCTGTCCCTGAACATGAAGCTACAAATCTCCACAATTAGGACCATAATCCAGATTCTTTGTCTAGTCCAGAATTCCTTTCATTCTCACCA--------TCCTCTTCTTAAACATTTTTAAATGTAGGTAattgtttagatagatggcacacttactggctcaaaatttttaa--aac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     472774 228 -    863181 GCACATCCATTTCCAGCTATGACATTTCGTCCACTTTCCTGTAAAGGAGGCGGAAGTTGTGGCTGTCCCTGAACATGAAGCTACAAATCTCCACAGTTAGGACCATAATCCAGATTCTTTGTCTAGTCTAGAATTCCTTTCGTTCTCACCA--------TCCTCTTCTTAAACATTTTTAAATGTAGGTAattgtttagatagatggcacactcactggctcaaaatttttaa--aac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29622451 228 -  71996105 GCACATCCATTTCCGGCTATGACATTTCGTCCACTTTCCTGTAAAGGAGGCGGAAGTTGTGGCTGTCCCTGAACATGAAGCTACAAATCTCCACAATTAGGACCATAATCCAGATTCTTTGTCTAGTCCAGAATTCCTTTCATTCTCACCA--------TCCTCTTCTTAAACATTTTTAAATGTAGGTAattgtttcgatagatggcacacttactggctcaaaatttttaa--aac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     336300 228 -    735854 GCACATCCATTTCCAGCTATGACATTTCGTCCACTTTCCTGTAAAGGAGGCGGAAGTTGTGGCTGTCCCTGAACATGAAGCTACAAATCTCCACAGTTAGGACCATAATCCAGATTCTTTGTCTAGTCTAGAATTCCTTTCGTTCTCACCA--------TCCTCTTCTTAAACATTTTTAAATGTAGGTAATTGTTTAGATAGATGGCACACTCACTGGCTCAAAATTTTTAA--AAC
i manLeu1.NW_012107142v1   C 0 M 380
s colAng1.NW_012115577v1     260077 228 -   1829203 GCACATCCATTTCCAGCTATGACATTTCGTCCACTTTCCTGTAAAGGAGGCGGAAGTTGTGGCTGTCCCTGAACATGAAGCTACAAATCTCCACAATTAGGACCATAATCCAGATTCTTTGTCTAGTCCAGAATTCGTTTCATTCTCACTA--------TCCTCTTCTTAAACATTTTTAAATATAGGTAattatttagatagatggcacacttactggctcaaaatttttaa--aac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30455094 232 + 171630274 GCACATCCATTTCCAGCTGTGACATTTCATCCACTTTCCTGTAAAGGAGGCTGAAGTTGTGGCTGCCCCTGAACATGAAGCTGCAAATCTCTACAATTAGGATCATAATCCAGATTCTTTGACTAGTCCAGAGTTTCTTTCATTCTGACCACCGATTCTTTCTTTTCTTAAACATTTTAAAATTTAAGTAATTGTT----TAGATTACACACTTTCTGGTTCAAAATTTTAAA--AAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           266657 235 +    515838 GCACATCCATTTCCAGCTATGACATTTCATCCACTTTCCTGTAAA-GAGGCTGAAGTTGTGGCTGCTCCTGAACATGAAGCTACAAATCTCTACAATTAGGATCATAATCCATATTCTTTGACTAGTTCAGAATTCCTTTTATTCTGACCACTGATCCTTTCTTTTCTTTAACATTTTTAAATTTAAGTAattgtttagctagatggcacatttcccagctcaaaattttaaa--aac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     895996 236 -   1771730 GCACATCTATTTCCAGCTGTGACATTTCATCCACTTTCCTGTAAAGGAGGCTGAAGTGGTGGCTGCCGCTGAACATGAAGCTGCAAATCTCTACAATTAGGATCATAATCCAGATTCTTTGACTAGTCCAGAATTCCTTTCATTCTGACCACTGATTCTTTCTTTTCTTAAACATTTTAAAATTTAAGTAACTGtttaaatagatggcacacttcctggttcaaaattttaaa--aac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      71529 236 -    486031 GCACATCCATTTCCAGCTGTGACATTTCATCCACTTTCCTGTAAAGGAGGCTGAAGTTGTGGCTGCCCCTGAACATGAAGCTACAAATCTCTACAATTATGGTCATAATCCAGATTCTTTGACTAGTCCAGAATTCCTTTCATTCTGACCACTGATTCTTTCTTTTCTTTAACATTTTAGTATTTAAGTAattgtttagatagatggcacatttcgtggctcaaaattttaaa--aac
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     157084 238 -   1411461 GCACAGCCATTTTCAGCTGTGACACGCGAGCCACCTGCCTGTGCAGGAGCCTGAAGCTGTGGCTGTCCCAGAGCACGAGGCTCCAAATCTCTGGAATTAGGCCTAGAATCCAGACCTTCTGACTAGTCCAGAATTCCTTTCATTCTAGCCACCGATTCTTCCTCTTCTTAAACCTTTCAAAATATAAGTAattgtttaaaaagatgctacatttactggttcaaaatttaaaaggaac
i proCoq1.NW_012149775v1   I 26 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I

a score=1076594.000000
s hg38.chr6_GL000254v2_alt  1476664 113 +   4827813 acaggaaaaagtctccctcttgcccctggtttccacacatctagtttctctctccagaagcaaatt-ttactagttcattgatatattcttccagagatgttctttgcataaaa
s panTro5.chr6             30346094 113 + 175400573 acagggaaaagtctccctcttgcccctggtttccacacatctagtttctctctccagaagcaacct-ttactagttcattgacgtagtcttccagagatgttctttgcataaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30580440 113 + 173848474 acagggaaaagtctccctcttgcccctggtttccacacatctagtttctctctccagaagcaacct-ttactagttcattgacgtagtcttccagagatgttctttgcataaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     287519 112 +   2037526 acaggaaaaa-tctccctcttgcccctggtttccacacatctagtttctctctccagaagcaactt-ttactagttcattgatgtattcttccagagatgttctttgcataaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74954502 113 + 122973662 acagggaaaagtctccctcttgcccctggtttccacacatctagtttctctctccagaagtaacct-ttactagttcattgatatattcttccagagatgttcttagcataaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30832529 113 + 172585720 acagggaaaagtctccctcttgccccgggtttccagacatctagtttctctctccagaaacaacct-ttactagtttattgatgtattcttccagagatgttctttgcataaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30122020 113 - 170955103 acagggaaaagtctccctcttgccccgggtttccagacatctagtttctctctccagaaacaacct-ttactagtttattgatgtattcttccagagatgttctttgcataaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     370935 113 +   1495729 acagggaaaagtctccctcttgccccgggtttccagacatctagtttctctctccagaaacaacat-ttactagtttattgatgtattcttccagagatgttctttgcataaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     473002 113 -    863181 gcagggaaaagtctccctcttgccccgggtttccagacatctagtttctctctccagaaacaacct-tcactagtttattgatgtattcttccagagatgttctttgcataaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29622679 113 -  71996105 acagggaaaagtctccctcttgccccgggtttccagacatctagtttctctctccagaaacaacct-ttactagtttattgatgtattcttccagagatgttctttgcataaaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     260305 113 -   1829203 acagggaaaagtctccctcttgccccgggtttccagacatctagtttctctctccagaaacaacct-ttactagtttattgatgtattcttccagagatgttctttgcataaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30455326 112 + 171630274 ACGGGGGAAAGGCTCCCTCCTGCCCCTGG-TTCCAGACATCTAATTTCTCTCTCCAGaagcaatct-ttactagtttattgatgtatccttccagagatattctttggataaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           266892 113 +    515838 acagaggaaagtctccctcctgcccctggtttccagacatctagtttctctcttcagaagcaatct-ttactagtttattgatgtatccttccagagatattctttcgataaaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     896232 112 -   1771730 acaggggaaaggctccctcctgcccctgg-ttccagacatctagtttctctctccagaagcagtct-ttactagtttatcgatgtatccttccagagatattctttggttaaag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      71765 113 -    486031 acaggggaaagtctccctcctgcccctggtttccagacatctagtttctctcttcagaagcaatct-ttactagtttattgatgtatccttccagagatattctttggataaaa
i aotNan1.NW_018496901v1   C 0 I 361
s proCoq1.NW_012149775v1     157322 114 -   1411461 gcattggaaagtgtccctcccactcctggtttccagacatctaggttttctccccagaggcaacctgttactagtttcttgatgtatccttccagaaatattctctgcataaaa
i proCoq1.NW_012149775v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I
e manLeu1.NW_012107142v1     336528 380 -    735854 M

a score=232600.000000
s hg38.chr6_GL000254v2_alt  1476777 28 +   4827813 agcaaataagaatg-tatttattcttccc
s panTro5.chr6             30346207 28 + 175400573 agcaaataagaatg-tatttattcttccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30580553 28 + 173848474 agcaaataagaatg-tatttattcttccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     287631 28 +   2037526 agcaaataagaatg-catttattcttccc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74954615 28 + 122973662 agcaaataagaatg-tatttattcttccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30832642 28 + 172585720 agcaaataagaatg-tatttattcttccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30122133 28 - 170955103 agcaaataagaatg-tatttattcttccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     371048 28 +   1495729 agcaaataagaatg-tatttattcttccc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     473115 28 -    863181 agcaaataagaatg-tatttattcttccc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29622792 28 -  71996105 agcaaataagaatg-tatttattcttccc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     260418 22 -   1829203 agcaaataagaatg-------ttcttccc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30455438 29 + 171630274 agcaagtaagaatgttatttattgttccc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           267005 29 +    515838 agcaaataagaatgttatttattcttccc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     896344 29 -   1771730 agcaagtaagaatgttatttattcttcct
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     157436 28 -   1411461 agcaaataagtatg-tatttattcttccc
i proCoq1.NW_012149775v1   C 0 I 50
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I
e aotNan1.NW_018496901v1      71878 361 -    486031 I
e manLeu1.NW_012107142v1     336528 380 -    735854 M

a score=256425.000000
s hg38.chr6_GL000254v2_alt  1476805 37 +   4827813 cgatttgtgcaaataatagcatattatacacactgtt
s panTro5.chr6             30346235 37 + 175400573 cgatttgtgcaaataatagcatattacacacactgtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30580581 37 + 173848474 cgatttgtgcaaataatagcatattacacacactgtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     287659 37 +   2037526 cgatttgtgcaaataatagcatattatacacactgtt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74954643 37 + 122973662 cgatttatgcaaataatagcatattatatacactgtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30832670 37 + 172585720 caatctgtgcaaataatggcatattgtacacactgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30122161 37 - 170955103 caatctgtgcaaataatggcatattgtacacactgtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     371076 37 +   1495729 caatctgtgcaaataatggcatattgtacacactgtt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     473143 37 -    863181 caatctgtgcaaacaatggcatattgtacacactgtt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29622820 37 -  71996105 caatctgtgcaaataacggcatattgtacacactgtt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     260440 36 -   1829203 caatctatgcaaataatggcata-tatacacactgtt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30455467 37 + 171630274 ccatttatgcaaataatgccatattacacacactgtt
i calJac3.chr4             C 0 I 312
s saiBol1.JH378341           267034 37 +    515838 ccatttatgcaaataataccatattgcacacactgtt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     896373 37 -   1771730 ccatttatgcaaataataccatattacacacactgtt
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e proCoq1.NW_012149775v1     157464 50 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I
e aotNan1.NW_018496901v1      71878 361 -    486031 I
e manLeu1.NW_012107142v1     336528 380 -    735854 M

a score=74652.000000
s hg38.chr6_GL000254v2_alt  1476842 9 +   4827813 ctgtacctt
s panTro5.chr6             30346272 9 + 175400573 ctgtacctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30580618 9 + 173848474 ctgtacctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     287696 9 +   2037526 ctgtacctt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74954680 9 + 122973662 ctgtacctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30832707 9 + 172585720 ctgtacctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30122198 9 - 170955103 ctgtacctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     371113 9 +   1495729 ctgtacctt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     473180 9 -    863181 ctgtacctt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29622857 9 -  71996105 ctgtacctt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     260476 9 -   1829203 ctgtacctt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30455816 9 + 171630274 cTGTACCTT
i calJac3.chr4             I 312 C 0
s saiBol1.JH378341           267071 9 +    515838 ctgtatctt
i saiBol1.JH378341         C 0 I 306
s cebCap1.NW_016107755v1     896410 9 -   1771730 ctgtatctt
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e proCoq1.NW_012149775v1     157464 50 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I
e aotNan1.NW_018496901v1      71878 361 -    486031 I
e manLeu1.NW_012107142v1     336528 380 -    735854 M

a score=28206.000000
s hg38.chr6_GL000254v2_alt  1476851 6 +   4827813 gctttt
s panTro5.chr6             30346281 6 + 175400573 gctttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30580627 6 + 173848474 gctttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     287705 6 +   2037526 gctttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74954689 6 + 122973662 gctttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30832716 6 + 172585720 attttA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30122207 6 - 170955103 attttA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     371122 6 +   1495729 attttA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     473189 6 -    863181 atttta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29622866 6 -  71996105 attttA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     260485 6 -   1829203 actttA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30455825 6 + 171630274 GCtttt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           267386 6 +    515838 GCtttt
i saiBol1.JH378341         I 306 C 0
s cebCap1.NW_016107755v1     896419 6 -   1771730 gttttt
i cebCap1.NW_016107755v1   C 0 I 302
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e proCoq1.NW_012149775v1     157464 50 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I
e aotNan1.NW_018496901v1      71878 361 -    486031 I
e manLeu1.NW_012107142v1     336528 380 -    735854 M

a score=7304.000000
s hg38.chr6_GL000254v2_alt  1476857 10 +   4827813 AAATTTAATT-
s panTro5.chr6             30346287 10 + 175400573 AAATTTAATT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30580633 10 + 173848474 AAATTTAATT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     287711 10 +   2037526 AAATTTAATT-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74954695  5 + 122973662 A-----AATT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30832722  4 + 172585720 ------AATT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30122213  4 - 170955103 ------AATT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     371128  4 +   1495729 ------AATT-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     473195  4 -    863181 ------catt-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29622872  4 -  71996105 ------AATT-
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     260491  4 -   1829203 ------AATT-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30455831  5 + 171630274 ------aaatg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           267392  5 +    515838 ------aaatg
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e proCoq1.NW_012149775v1     157464 50 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I
e aotNan1.NW_018496901v1      71878 361 -    486031 I
e cebCap1.NW_016107755v1     896425 302 -   1771730 I
e manLeu1.NW_012107142v1     336528 380 -    735854 M

a score=1187375.000000
s hg38.chr6_GL000254v2_alt  1476867 133 +   4827813 TATTTTTA-TTTTTTTAAATCAGTAATCTATGTGTCCAAAGCATAAACCAGGCATGGGCATAGACCAGAAGCCAAGCTGGGATAAACAGGGGGTTGCTTTGTTCCTGTCTGATGTGAGATGGGCACCATTAAGC
s panTro5.chr6             30346297 133 + 175400573 TATTTTTA-TTTTTTAAAATCAGTAATCTATGTGTCCAAAGCATAAACCAGGCATGGGCATAGACCAGAAGCCAAGCTGGGATAAACAGGGGGTTGCTTTGTTCCTGGTTGATGTGAGATGGGCACCATCAAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30580643 133 + 173848474 TATTTTTA-TTTTTTAAAATCAGTAATCTATGTGTCCAAAGCATAAACCAGGCATGGGCATAGACCAGAAGCCAAGCTGGGATAAACAGGGGGTTGCTTTGTTCCTGGTTGATGTGAGATGGGCACCATCAAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     287721 133 +   2037526 TATTTTTA-TTTTTTAAAATCAGTAATCTACGTGTCCAAAGCATAAACCAGGCATGGGCATAGACCAGAAGCCAAGCTGGGATAAACAGGGGGTTGCTTTGTTCCTGTCTGATATGAGATGGGCACCATTAAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74954700 133 + 122973662 TATTTTTA-TTTTTTAAAATCAGTAATCTATGTATCCAAAGCATAAACCAGGCATGGGCATAGACCAGAAGCCAAGCTGGGATAAACAGGGAGTCGCTTTGTTCCTGGCTGATATGAGATGGGCACCATCAAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30832726 133 + 172585720 TATTTTTG-TTTTTTAAAATCAGTAATCTATGTGTCCAAAGCATAAACCAGGCATGGGCATAGACCAGAAGCCAAGCTGGGATAAACAAGGGGTTGCTTTGTTCCTGGCTGACATGAGATGGGCACCATCAAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30122217 133 - 170955103 TATTTTTG-TTTTTTAAAATCAGTAATCTATGTGTCCAAAGCATAAACCAGGCATGGGCATAGACCAGAAGCCAAGCTGGGATAAACAAGGGGTTGCTTTGTTCCTGGCTGACATGAGATGGGCACCATCAAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     371132 133 +   1495729 TATTTTTG-TTTTTTAAAATCAGTAATCTATGTGTCCAAAGCATAAACCAGGCATGGGCATAGACCAGAAGCCAAGCTGGGATAAACAAGGGGTTGCTTTGTTCCTGGCTGACATGAGATGGGCACCATCAAGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     473199 133 -    863181 taTTTTTG-TTTTTTAAAATCAGTAATCTATGTGTCCAAAGCATAAACCAGGCATGGGCATAGACCAGAAGCCAAGCTGGGATAAACAAGGGGTTGTTTTGTTCCTGGCTGACATGAGATGGGCACCATCAAGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29622876 133 -  71996105 TAATTTTG-TTTTTTAAAATCAGTAATCTATGTGTCCAAAGCATAAACCAGGCATGGGCATAGACCAGAAGCCAAGCTGGGATAAACAAGGGGTTGCTTTGTTCCTGGCTGACATGAGATGGGCACCATCAAGC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     260495 133 -   1829203 TATTTTTG-TTTTTTAAAATCAGTAATCTATGTGTCCAAAGCATAAACCAGGCATGGGCATAGACCAGAAGCCAAGCTGGGATAAACAAGGGGTTGCTTTGTTCCTGGCTGATATGAGATGGGCACCATCAAGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30455836 133 + 171630274 tattttta-ttttttaaattCAGTAATCTACATGTCCAAAGCATAAACCAGGCATGGGCATAGACTGAAAGCCAAGCTGGGATAAGGAAGGGGTTGCTTTGTTCCTGGCTCATACAAGATGGGCACCATCAAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           267397 134 +    515838 tatttttattttttttaattCAGTAATCTATGTGTCCAAAGCATAAATCAGGAGTGGGCATAGACTGAAAGCCAAGCTGGGATAAGCAAGGAGTTGCTTTGTTCCTGGATGATATGAGATGGGCACCATCAAGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     896727 133 -   1771730 TATTTTTA-TTTTTTAAATTCAGTAATCTATGTGTCCAAATCATAAACCAGGAGTGGGCATACACTGAAAGCCAAGCTGGGATAAGCAAGGGGTTGCTTTGTTCCTGGCTGATATGAGACGGGCACTATCAAgc
i cebCap1.NW_016107755v1   I 302 C 0
s aotNan1.NW_018496901v1      72239 133 -    486031 TATTTTTA-TTTTTTAAATTCAGTAATCTACGTGTCCAAAGCATAAACCAGGCGTGGGCATAGACTGAAAGCCAAGCTGGGATAAGCAAGGAGTTGCTTTGCTCTTGGCTGATATGAGATGGGCACCATCAAGC
i aotNan1.NW_018496901v1   I 361 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e proCoq1.NW_012149775v1     157464  50 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I
e manLeu1.NW_012107142v1     336528 380 -    735854 M

a score=910.000000
s hg38.chr6_GL000254v2_alt  1477000 1 +   4827813 t
s nomLeu3.chr1a            74954833 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30455969 1 + 171630274 T
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     896860 1 -   1771730 t
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      72372 1 -    486031 T
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e proCoq1.NW_012149775v1     157464 50 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           267531 0 +    515838 C
e otoGar3.GL873550           307180 430 +  18854210 I
e colAng1.NW_012115577v1     260628 0 -   1829203 C
e manLeu1.NW_012107142v1     336528 380 -    735854 M
e chlSab2.chr17            29623009 0 -  71996105 C
e cerAty1.NW_012002535v1     473332 0 -    863181 C
e macNem1.NW_012012100v1     371265 0 +   1495729 C
e macFas5.chr4             30122350 0 - 170955103 C
e rheMac8.chr4             30832859 0 + 172585720 C
e gorGor5.CYUI01015528v1     287854 0 +   2037526 C
e panPan2.chr6             30580776 0 + 173848474 C
e panTro5.chr6             30346430 0 + 175400573 C

a score=26462.000000
s hg38.chr6_GL000254v2_alt  1477001 9 +   4827813 ttttttttt
s panTro5.chr6             30346430 9 + 175400573 ttttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30580776 6 + 173848474 ---tttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     287854 2 +   2037526 -------tt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74954834 9 + 122973662 ttttttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30832859 7 + 172585720 --ttttttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30122350 6 - 170955103 ---tttttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     371265 6 +   1495729 ---tttttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     473332 6 -    863181 ---tttttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29623009 5 -  71996105 ----ttttt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     260628 6 -   1829203 ---TCtttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30455970 9 + 171630274 TTTTTTTtt
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     896861 9 -   1771730 ttttttttt
i cebCap1.NW_016107755v1   C 0 I 7
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e proCoq1.NW_012149775v1     157464 50 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           267531 0 +    515838 C
e otoGar3.GL873550           307180 430 +  18854210 I
e aotNan1.NW_018496901v1      72373 0 -    486031 C
e manLeu1.NW_012107142v1     336528 380 -    735854 M

a score=24024.000000
s hg38.chr6_GL000254v2_alt  1477010 4 +   4827813 tttt
s panTro5.chr6             30346439 4 + 175400573 tttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30580782 4 + 173848474 tttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     287856 4 +   2037526 tttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74954843 4 + 122973662 tttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30832866 4 + 172585720 tttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30122356 4 - 170955103 tttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     371271 4 +   1495729 tttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     473338 4 -    863181 tttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29623014 4 -  71996105 tttt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     260634 4 -   1829203 tttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30455979 4 + 171630274 tttt
i calJac3.chr4             C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e proCoq1.NW_012149775v1     157464 50 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           267531 0 +    515838 C
e otoGar3.GL873550           307180 430 +  18854210 I
e aotNan1.NW_018496901v1      72373 0 -    486031 C
e cebCap1.NW_016107755v1     896870 7 -   1771730 I
e manLeu1.NW_012107142v1     336528 380 -    735854 M

a score=373261.000000
s hg38.chr6_GL000254v2_alt  1477014 89 +   4827813 tttttcg-------agacagagtctggctctgtcat-ccaggct-ggagtacagtggcgcaatctcggctcactgcaagctccacctcccgggttcac
s panTro5.chr6             30346443 89 + 175400573 ttctccg-------agacagagtctggctctgtcat-ccaggct-ggagtacagtggcgcgatctcggctcactgcaagccccatctcccgggttcat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30580786 89 + 173848474 ttctccg-------agacagagtctggctctgtcat-ccaggct-ggagtacagtggcgcgatctcggctcactgcaagccccatctcccgggttcat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     287860 89 +   2037526 tttttcg-------agacagagtctggctctgtcat-ccaggct-ggagtacagtggcgcaatctcggctcactgcaagctccacctcccgggttcac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74954847 90 + 122973662 tttttcg-------agacagagtctggctctgtcat-ccaggctgggagtatagtggtgcgatctcggctcactgcaagctccacctcccaggttcac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30832870 89 + 172585720 ttttttt-------agacagagtctggctctgtcgc-ccaggct-ggagttcagtggcatgatctctgctcactgcaagctccgcctcccgggttcat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30122360 89 - 170955103 ttttttt-------agacagagtctggctctgtcgc-ccaggct-ggagttcagtggcatgatctctgctcactgcaagctccgcctcccgggttcat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     371275 89 +   1495729 ttttttt-------agacagagtctggctctgtcgc-ccaggct-ggagttcagtgacatgatctctgctcactgcaagctccgcctcccgggttcat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     473342 96 -    863181 tttttttttttttgggacggagtct-gctctgtcgcgccgggct-ggagtgcagtggctggatctcagctcactgcaagctctgcctcccgagtttac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29623018 89 -  71996105 ttttttt-------agacagagtctggctctgtcgc-ccaggct-ggagttcagtggcatgatctctgctcactgcaagctccgcctcccaggttcac
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     260638 89 -   1829203 ttttttt-------agacggagtctggctctgtcgc-ccaggct-ggggtgcagtggcacgatctctgctcactgcaagctccgcctcccgggttcat
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e proCoq1.NW_012149775v1     157464 50 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           267531  0 +    515838 C
e otoGar3.GL873550           307180 430 +  18854210 I
e aotNan1.NW_018496901v1      72373  0 -    486031 C
e cebCap1.NW_016107755v1     896870  7 -   1771730 I
e calJac3.chr4             30455983  0 + 171630274 C
e manLeu1.NW_012107142v1     336528 380 -    735854 M

a score=1017038.000000
s hg38.chr6_GL000254v2_alt  1477103 185 +   4827813 gccattctcctacttcagcctcccgagtagctgggactacaggcacccgccaccatgcccggctaatg----------------agacagggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccacctgtctcggcctcccaaagtgttgggattacaggcgtgagcc-accatgcct-ggccAAGC-------
s panTro5.chr6             30346532 185 + 175400573 gccattctcctacttcagcctcccgagtagctgggactataggcacccaccaccacggccagctaatg----------------agacggggtttcaccacattagccaggatggtctccatctcctgacctcgtgatccacctgtctcagcctcccaaagtgttgggattataggcgtgagcc-accatgcct-ggccAAGC-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30580875 185 + 173848474 gccattctcctacttcagcctcccgagtagctgggactataggcacccaccaccacggccagctaatg----------------agacggggtttcaccacattagccaggatggtctccatctcctgacctcgtgatccacctgtctcagcctcccaaagtgttgggattataggcgtgagcc-accatgcct-ggccAAGc-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     287949 184 +   2037526 gccattctcctacttcagcct-ccgagtagctgggactacaggcacccgccaccatgcccggctaatg----------------agacagggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccacctgtctcggcctcccaaagtgttgggattacaggcgtgagcc-accatgcct-ggccAAGC-------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74954937 192 + 122973662 gccattctcctacttcatcctcctgagtagctgggactacaggcacccaccaccatgctgggctaatg----------------agacggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccacctgtctcagcctcccaaagttttgagattacaggtgtgagcc-accatgact-ggccAAGCTTTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30832959 202 + 172585720 gccattctcttgctttagcctcctgagtagctgggactacaggcgcccgccaccacacccagctaatttctgtatttttcgtgcagacggggtttcaccgtgttagccaggatggtctcaatctcctgacctcatgatccacccgcctcggcctcccaaagtattgggattacaggcatgagcctaccatgcct-ggccAAGc-------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30122449 201 - 170955103 gccattctcttgctttagcttcctgagtagctgggactacaggcgcctgccaccacacccagctaatttctgtatttttcgtgcagacggggtttcaccgtgttagccaggatggtctcaatctcctgacctcatgatccacccgcctcggcctcccaaagtattgggattacaggcgtgagcc-accatgcct-ggccAAGC-------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     371364 201 +   1495729 gccattctcttgctttagcttcctgagtagctgggactacaggcgcctgccaccacacccagctaatttctgtatttttcgtgcagacggggtttcaccgtgttagccaggatggtctcaatctcctgacctcatgatccacccgcctcggcctcccaaagtattgggattacaggcgtgagcc-accatgcct-ggccAAGC-------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     473438 202 -    863181 gccattctcctgcctcagcctcccgaatagctgggactacaggtgcccaccacctcacccagctaatttctgtacttttcgtgcagacggggtttcaccgtgttagccaggatggtctcaatctcctgacctcatgatccacccgcctcggcctcccaaagtgttgggattacaggcgtgagcc-accatgcctggGCCAAGC-------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29623107 201 -  71996105 gccattctcctgctttagcctcctgagtagctgggactacaggcgcccgccaccacacccagctaatttctgtatttttcgtgcagacggggtttcaccgtgttagccaggatggtctcaatctcctgacctcatgatccacccgcctcggcctcccaaagtattgggattacaggcgtgagcc-accatgtct-ggccAAGc-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     336908 201 -    735854 gccattctcctgcctcagcctcccgaatagctgggactacaggcgcccgccacctcacccagctaatttctgtacttttcgtgcagacggggtttcaccgtgttagccaggatggtctcaatctcctgacctcatgatccacccgcctcggcctcccaaagtgttgggattacaggcgtgagcc-actatgtct-ggccAAGc-------
i manLeu1.NW_012107142v1   M 380 C 0
s colAng1.NW_012115577v1     260727 201 -   1829203 gccattctcctgcttcagcctcctgagtagctgagactacaggtgtccgccaccacacccagctaatttctgtatttttagtgcagacggggtttcaccatgttagccaggatggtcttgatctcctgacctcatgatccacccgcctcggcctcccaaagtgttgggattacaggcatgagcc-accatgcct-ggccAAGc-------
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e proCoq1.NW_012149775v1     157464  50 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           267531   0 +    515838 C
e otoGar3.GL873550           307180 430 +  18854210 I
e aotNan1.NW_018496901v1      72373   0 -    486031 C
e cebCap1.NW_016107755v1     896870   7 -   1771730 I
e calJac3.chr4             30455983   0 + 171630274 C

a score=9143.000000
s hg38.chr6_GL000254v2_alt  1477288 4 +   4827813 TTTT
s panTro5.chr6             30346717 4 + 175400573 TTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30581060 3 + 173848474 -ttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     288133 1 +   2037526 ---T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74955129 4 + 122973662 TTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30833161 3 + 172585720 -ttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30122650 4 - 170955103 TTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     371565 4 +   1495729 TTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     473640 1 -    863181 ---T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29623308 3 -  71996105 -ttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     337109 3 -    735854 -ttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     260928 2 -   1829203 --tt
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496901v1      72373 4 -    486031 TTTT
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e proCoq1.NW_012149775v1     157464 50 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           267531 0 +    515838 C
e otoGar3.GL873550           307180 430 +  18854210 I
e cebCap1.NW_016107755v1     896870 7 -   1771730 I
e calJac3.chr4             30455983 0 + 171630274 C

a score=71862.000000
s hg38.chr6_GL000254v2_alt  1477292 8 +   4827813 TTtttttt
s panTro5.chr6             30346721 8 + 175400573 TTtttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30581063 8 + 173848474 tttttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     288134 8 +   2037526 TTtttttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74955133 8 + 122973662 TTtttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30833164 8 + 172585720 tttttttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30122654 8 - 170955103 TTtttttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     371569 8 +   1495729 TTtttttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     473641 8 -    863181 TTtttttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29623311 8 -  71996105 tttttttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     337112 8 -    735854 tttttttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     260930 8 -   1829203 tttttttt
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           267531 8 +    515838 TTTTTGTT
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496901v1      72377 8 -    486031 TTtttttt
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     157514 8 -   1411461 ttttttct
i proCoq1.NW_012149775v1   I 50 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I
e cebCap1.NW_016107755v1     896870 7 -   1771730 I
e calJac3.chr4             30455983 0 + 171630274 C

a score=76824.000000
s hg38.chr6_GL000254v2_alt  1477300 11 +   4827813 aatgtatcaa-t
s panTro5.chr6             30346729 11 + 175400573 aatgtatcaa-t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30581071 11 + 173848474 aatgtatcaa-t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     288142 11 +   2037526 aatgtatcaa-t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74955141 11 + 122973662 aatgtatcaa-t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30833172 11 + 172585720 aatgtatcaa-t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30122662 11 - 170955103 aatgtatcaa-t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     371577 11 +   1495729 aatgtatcaa-t
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     473649 11 -    863181 aatgtatcaa-t
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29623319 11 -  71996105 aatgtatcaa-t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     337120 11 -    735854 aatgtatcaa-t
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     260938 11 -   1829203 aatgtatcaa-t
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30455983 10 + 171630274 aacgtatcaa--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           267539  8 +    515838 --AAAATCAG--
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496901v1      72385 11 -    486031 aatgtatcaat-
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     157522 11 -   1411461 catgtatcaa-t
i proCoq1.NW_012149775v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I
e cebCap1.NW_016107755v1     896870  7 -   1771730 I

a score=6133743.000000
s hg38.chr6_GL000254v2_alt  1477311 572 +   4827813 ttatgttggagattattccaatagcaaaagttcccttccacaccccaccccctactaatggctgcacaatgttctattgtatgaatgtagctagtttatttagcttaacttccgttgatgaacatttgttttttttctaaaatttgaagcaaatgtttctaaaacattgatgcaataggtatatgcatatattatttcacatatgcatgaatatatatgta----aaa-tttctaacatcagagttgctggctcaaagagaatgtacatttgtaatcttggaggaaattctcaaattcctactcctctaaaggaggagtactaattggcattcccatcagcagtgtatgggagtgccaatttcctcacacacttaccaacactgtgttaccaaatgtttggatttctgtcaatctgata-ggaaaaatagtatgtcagtgttattttaatttgtattttcttcatgagattgagat----tatcttttaatatgctttagagacatttggtatttctttttctatgaaatgtctgctgagatacctctgcccaattttcttcttggtagttgataaattctt
s panTro5.chr6             30346740 572 + 175400573 ttatgttggagattattcgaatagcaaaagttcccttccacaccccaccccctactaatggctgaacagtgttctgttatatgaatgtagctagtttatttagcttaacttccgttgatgaacatttggtttttttctaaaatttgaatcaaatgtttctaaaacattgatgcaataggtatatgcatatattatttcatatatgcatgagtatatatgta----aaa-tttctaacatcagaattgctggctcaaagagaatgtacatttgtaatcttggaggaaattctcaaattcctactcccctaaaggaggagtactaattggcattcccatcagcagtgtatgggagtgccaatttcctcacacacttaccaacactgtgtcaccaaatgtttggatttctgtcaatctgata-ggaaaaatagtatgtcagtgttattttaatttgtattttcttcatgagattgagat----tatcttttaatatgctttagagacatttggtatttctttttctatgaaatgtctgctgagatacctctgcccaattttcttcttggtagttgataaattctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30581082 573 + 173848474 ttatgttggagattattctaatagcaaaagttcccttccacaccccaccccctactaatggctgaacagtgttctgttgtatgaatgtagctagtttatttagcttaacttccgttgatgaacatttggtttttttctaaaatttgaatcaaatgtttctaaaacattgatgcaataggtatatgcatatattatttcatatatgcatgagtatatatgta----aaattttctaacatcagaattgctggctcaaagagaatgtacatttgtaatcttggaggaaattctcaaattcctactcccctaaaggaggagtactaattggcattcccatcagcagtgtatgggagtgccaatttcctcacacacttaccaacactgtgtcaccaaatgtttggatttctgtcaatctgata-ggaaaaatagtatgtcagtgttattttaatttgtattttcttcatgagattgagat----tatcttttaatatgctttagagacatttggtatttctttttctatgaaatgtctgctgagatacctctgcccaattttcttcttggtagttgataaattctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     288153 570 +   2037526 ttatgttggagattattccaatagcaaaagttcccttccacaccccaccccctactaatggctgcacaatattctattgtatgaatgtagctagtttatttagcttaacttccgttgatgaacattt--tttttttctaaaatttgaagcaaaagtttctaaaacattgatgcaataggtatatgcatgtattatttcacatatgcatgagtatatatgta----aaa-tttctaacatcagaattgctggctcaaagagaatgtacatttgtaatcttggaggaaattctcaaattcctactcctctgaaggaagagtactaattggcattcccatcagcagtgtatgggagcgccaatttcctcacacacttaccaacacagtgttaccaaatgtttggatttctgtcaatctgata-ggaaaaatagtatgtcagtgttattttaatttgtattttcttcatgagattgagat----tatcttttaatatgctttagagacatttggtatttctttttctatgaaatgtctgctgagatacctctgcccaattttcttcttggtagttgataaattctt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74955152 569 + 122973662 ttatgttggagattattccaatagcaaaagttcccttccacaccccgccccctactaatggctgcacagtgttctattgcatgaatgtagctagtttatttagcttaacttccattgatgaacatttggtttttttctaaaatttgaagcaaatgtttctaaaacattgatgcactacgtatatgcatatattatttcacatatgcatgagtatatatgta----aaa-tttctaacatcagaattgctggctcagagagaatgtacatttgtaatcttggaggaaattctcaaatccct------ctaaaggaggagtactaattggcattcccatcagcagtgtatgggagtgcctatttcct--cacacttaccaacattgtgttaccaaatgtttggatttctgtcaatctgatagggaaaaatagtatgtcagtgttattttaatttgtattttcttcataagagtgagactgagtatcttttaatatgctttagagacatttgatatttctttttcgatgaaatgtctactgagatacctctgcccaattttcttctcggtagttgataaattctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30833183 577 + 172585720 ttatgttggagattattccaatagcaaaagttcccttccgcaccccatcccctactaatggctgcacagtgttctattgtatgaatgtagccagtttatttaacttaacttccattgatgaacatttggtttgtttctaaaatttgaagcaaatgtttctaaaacattgatgcaatgtgtatatgcatatatcatttcacatatgcatgagtatatatgta----aaa-tttctaacatcagaattgctggctcaaagagaatgtacacttgtaatcttggaggaaattctcaaatccctactcctctaaaggaggagtactaattggcattcccatcagcagtatatgggagtgcctatttcctcacacacttaccaacactgtgttaccaaacgtttggatttctgtcaatctgatagggaaaaatagtatgccagtgttattttaatttgtattttctccatgagagtgagactgagtatcttttaatatactttagagacatttggtatttttttttctatgaaatgtctgctgagatacctctgcccaattttcttattggtggttgataaattctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30122673 573 - 170955103 ttatgttggagattattccaatagcaaaagttcccttccgcaccccatcccctactaatggctgcacagtgttctattgtatgaatgtagccagtttatttaacttaacttccattgatgaacatttg----gtttctaaaatttgaagcaaatgtttctaaaacattgatgcaatgtgtatatgcatatatcatttcacatatgcatgagtatatatgta----aaa-tttctaacatcagaattgctggctcaaagagaatgtacacttgtaatcttggaggaaattctcaaatccctactcctctaaaggaggagtactaattggcattcccatcagcagtatatgggagtgcctatttcctcacacacttaccaacactgtgttaccaaacgtttggatttctgtcaatctgatagggaaaaatagtatgccagtgttattttaatttgtattttctccatgagagtgagactgagtatcttttaatatactttagagacatttggtatttttttttctatgaaatgtctgctgagatacctctgcccaattttcttattggtggttgataaattctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     371588 577 +   1495729 ttatgttggagattattccaatagcaaaagttcccttccgcaccccatcccctactaatggctgcacagtgttctattgtatgaatgtagccagtttatttaacttaacttccattgatgaacatttggtttgtttctaaaatttgaagcaaatgtttctaaaacattgatgcaatgtgtatatgcatatatcatttcacatatgcatgagtatatatgta----aaa-tttctaacatcagaattgctggctcaaagagaatgtacacttgtaatcttggaggaaattctcaaatccctactcctctaaaggaggagtactaattggcattcccatcagcagtatatgggagtgcctatttcctcacacacttaccaacactgtgttaccaaacgtttggatttctgtcaatctgatagggaaaaatagtatgccagtgttattttaatttgtattttctccatgagagtgagactgagtatcttttaatatactttagagacatttggtatttttttttctatgaaatgtctgctgagatacctctgcccaattttcttattggtggttgataaattctt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     473660 576 -    863181 ttatgttggagattaatccaatagcaaaag-tccctctggccacccaccccctactaatggctgcacagtgttctattgtatgaatgtagccagtttatttaacttaacttccattgatgaacatttggtttgtttctaaaatttgaagcaaatgtttctaaaacattgatgcaatgtgtatatgcatatatcatttcacatatgcatgagtatatatgta----aaa-tttctaacatcagaattgctggctcaaagagaatgtacacttgtaatcttggaggaaattctcaaatccctactcttctaaaggaggagtactaattggcattcccatcagcagtatatgggagtgcctatttcctcacacacttaccaacactgtgttaccaaacgtttggatttctgtcaatctgatagggaaaaatagtatgccagtgttattttaatttgtattttctccatgagagtgagactgagtatcttttaatatactttagagacatttggtatttctttttctatgaaatgtctgctgagatacctctgcccaattttcttattggtggttgataaattctt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29623330 577 -  71996105 ttatgttggagattattccaacagcaaaagttcccttccgcaccccaccccctactaatggctgcacagtgttctattgtgtgaatgtagccagtttatttaacttaacttccattgatgaacatttggtttgtttctaaaatttgaagcaaatgtttctaaaacattgatgcaacgtgtatatgcatatatcatttcacatatgcatgaatatatatgta----aaa-tttctaacatcagaattgctggctcaaagagaatgtacacttgtaatcttggaggaaattctcaaatccctactcctgtaaaggaggagtactaattggccttcccatcagcagtatatgggagtgcctatttcctcacacacttaccaacactgtgttaccaaacgtttggatttctgtcaatctgatagggaaaaatagtatgccagtgttattttaatttgtattttctccatgagagtgagactgagtatcttttaatatactttagagacatttggtaattttttttctatgaaatgtctgctgagatacctctgcccaattttcttattggtggttgataaattctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     337131 577 -    735854 ttatgttggaggttattccaatagcaaaagttcccttccgcaccccaccccctactaatggctgcacagtgttctattgtatgaatgtagccagtttatttaacttaacttccattgatgaacatttggtttgtttctaaaatttgaagcaaatgtttctaaaacattgatgcaatgtgtatatgcatatatcatttcacatatgcatgagtatatatgta----aaa-tttctaacatcagaattgctggctcaaagagaatgtacacttgtaatcttggaggaaattctcaaatccctactcttctaaaggaggagtactaattggcattcccatcagcagtatatgggagtgcctatttcctcacacacttaccaacactgtgttaccaaacgtttggatttctgtcaatctgatagggaaaaatagtatgccagtgttattttaatttgtattttctccatgagagtgagactgagtatcttttaatatactttagagacatttggtatttctttttctatgaaatgtctgctgagatacctctgcccaattttcttattggtggttgataaattctt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     260949 577 -   1829203 ttatgttggagattattccaatagcaaaagttcccttcttcaccccatcccctacgaatggctgcacagtgttctattgtatgaatgtagctagtttatttaacttaacttccattgacgaacatttggtttgtttctaaaatttgaagcaaatgtttctaaaacattgatgcaatgtgtatatgcatatatcatttcacatatgcatgagtatatatgta----aaa-tttctaacatcagaattgctggctcaaagagaatgtacacttgtaatcttggaggaaattctcaaatccctactcctctaaaggaggagtactaattggcattcccatcagcagtatatgggagtgcctgtttcctcacacacttaccaacactgtgttaccaaacgtttggatttctgtcaatctgatagggaaaaatagtatgccagtgttattttaatttgtattttcttcatgagagtgagactgagtatcttttaatatactttagagacatttggtatttctttttctatgaaatgtctgctaagatacctctgcccaattttcttattggtagttgataaattctt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30455993 575 + 171630274 ttatgttggagattattccaatggcaaaagctcccttctgcaccctaccccctactaatggctgcacagtggtctactgtatgaatgtagctagtttatttagcttaacttccattgttaaacatttggttggtttccaaaatttgaagcaaatgtttttgaaacattgatgcaatatttatatgcatatattatttcacatatgcatgagaatatatgtatgttaaa-tttctaacatcagacttgctggctgaaagagaatgttcatttgtaatcttagaggaaattctcaaattcctactcctcta---aaggagtactagttgacatttccatcagcagtacataggagtgcctatttcctcccgcacataccaacactgtgttaccaaacacttggatttctgtcaatctgattggggaagatagtatg-cagtgctattttaatttgca-tttctttataagagtgagactgagtatcttttaatatgctttagagacattttgtatttctttttctatgaaatgtctgttgagatacttctgcccgatgttcttcttggtagttgataaattc-t
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           267547 578 +    515838 TTATGTTGGAGATTATTCCAATAGCAAAGGTTCCTTTCTGCAACCTACCCCCTACTAATGAGtacacagtgttctactaaatgaatgtagctagtttatttagcttaacttccattgatgaacatttggttagtttctaaaatttgaagcaaatgtttctcaaacattgatgcaatatttatatgcatatattatttcacatatgcatgagtatatacgtatgttaaa-tttctaacatcagattcactggctcaaagagaatgtgcatttgtaatcttggaggaagttctcaaattcctactcctctaaagaaggagtattaattgacatttccatcagcagtacatgggagtgcctatttcttcacacacata-tgacactgtgttaccaaacgcttggatttctgtcaatctggttgcggaaaatagtacg-cagtgcaaatttaatttgcattttcctcatgagagtgagactgagtatcttttaatgtgctttagagacattttgtatttcttttt-tatgaaatgtctgttgagatacttctgcctgatgttcttcttggtagttgataaattctt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     896877 578 -   1771730 ttatgttggaga-tattccaatagcaaaagttcctttctgcatcctaccccctactaatggctgcacagtgttctactgtgtgaatgtagctagtttatttagcttaacttccattgatgaacatttggttagtttctaaaattcgaagcaaatgtttctcaaacattgatgaaatacttatatgcatatattatttcacatatgcatgagtatatacgtatgctaaa-tttctaacatcagacttgctggctcaaagagaatgtgcatttgtaatcttggaggaaattctcaaattcct-ctcctctaaagaaggagtattaattgacatttccatcagcagaacatgggattgcctatttcctcacacacataccaacaccgtattaccaaacgcttggatttctgtcaatctgattggggaaaatagtatg-cagtgttattttaatttgcattttcttcatgagagtgagactgagtatcttttaatatgctttagagatattttgtatttctttttctatgaaatgtctgttgagatacttctgcccgatgttcttcttggtagttgataaattctt
i cebCap1.NW_016107755v1   I 7 C 0
s aotNan1.NW_018496901v1      72396 576 -    486031 -tatgttggagattattccaatagcaaaagttcctttctgcatcctaccccctactaatggctgcacggtgttctac-gtatgaatgtagctagtttatttagtttaacttccatcgacaaacatttggttagtttctaaaatttgaagcaaatgtttctaaaacattgatgcaatttttatatgcatatattatttcacatatgcgtgagtatatacgtatgttaaa-tttctaacatcagacttgctggctcaaagagaatgtgcatttgtaatcttggaggaaattctcaaattcct-ctcgtctaaagaaggagtactaattgacatttccatcagcagtacatgggagtgcctatttcctcacacacatacagacactgtgttaccaaacacttggatttctgtcaatctgattggggaaaatagtatg-cagtgttattttcatttgcattttcttcatgagagtgagactgagtatcttttaatatgctttagagatattttgtatttctttttctatgaaatgtctgttgagatacttctgcccagtgttcttc-tggtagttgctaaatcctt
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     157533 555 -   1411461 ttaccttggagattattccaataacaaacgctccctccttcaccctgccccctgctaatgggtg--cagtgtcctattgtacggatgtagccagtttatttagcttaaacttcatgggtgaacatttggtttgtgtct-aaatttgatgcaaatgtttctaaaacgtcgatgcagtgtttatatagatatattatttcatacatgcatgcgtatacctgta--------tgttgaacatcagaattgctgg-tcaaagagaatgcgcatttgtagtgttgaaggaaattatgaaattactactcccctcaaggaggagtactaactgacattcccatcagccatgtgtgggggtgcctgtctcctcac--------caacactgtgtcaccaaacgtttggatttctgccaatctgatagaggaaaagagtatttcagtgtc------atttgcctttttttcatgtgagtgagactgagcatcttttaaaatgttttagagactttttgtatttctttttctatgaagtgtctgttcat-ttcttctgtccatttttctctttggtaatcgataatttctt
i proCoq1.NW_012149775v1   C 0 I 28
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I

a score=217066.000000
s hg38.chr6_GL000254v2_alt  1477883 22 +   4827813 atttgcaagagctgtatataaa
s panTro5.chr6             30347312 22 + 175400573 atttgtaagagctgtatataaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30581655 22 + 173848474 atttgtaagagctgtatataaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     288723 22 +   2037526 atttgcaagagctgtatataaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74955721 22 + 122973662 atttgtaagagctctatataaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30833760 22 + 172585720 atttgtaagagctctatgtaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30123246 22 - 170955103 atttgtaagagctctatgtaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     372165 22 +   1495729 atttgtaagagctctatgtaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     474236 22 -    863181 atttgtaagagctctatgtaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29623907 22 -  71996105 atttgtaagagctctatgtaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     337708 22 -    735854 atttgtaagagctctatgtaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     261526 22 -   1829203 atttgtaagagctctacgtaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30456568 22 + 171630274 atttgtaagagctctgtataAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           268125 22 +    515838 atttgtaagagctcaatataaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     897455 22 -   1771730 atttgtaagagctctatataaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      72972 22 -    486031 atttgtaagagctctatataaa
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e proCoq1.NW_012149775v1     158088 28 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I

a score=690914.000000
s hg38.chr6_GL000254v2_alt  1477905 72 +   4827813 agg----taattagCCCTTTGATTTTGATGGCAGTTGTAAATATTTTTCTTCTTCCAATGGTATTTCGTCATTTGT
s panTro5.chr6             30347334 72 + 175400573 ggg----taattagCCCTCTGATTTTGATGGCAGTTGTAAATATTTTTCTTCTTCCATTGATATTTCATCATTTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30581677 72 + 173848474 ggg----taattagCCCTCTGATTTTGATGGCAGTTGTAAATATTTTTCTTCTTCCATTGATATTTCATCATTTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     288745 72 +   2037526 agg----taattagCCCTCAGATTTTGATGGCAGTTGTAAATATTTTTCTTCTTCCGATGGTATTTCGTCATTTGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74955743 72 + 122973662 cgg----taattagCCCTTTCATTTTGATGGTAGTTGTAAATGTTTTTCTTCTTCCATTGGTATTTGGTCATTTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30833782 72 + 172585720 agg----taattagCCCTCTGATTTTGATGGTAGTTATAAATatttttcttctttcatttttatttggtcatttgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30123268 72 - 170955103 agg----taattagCCCTCTGATTTTGATGGTAGTTATAAATatttttcttctttcatttgtatttggtcatttgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     372187 72 +   1495729 agg----taattagCCCTCTGATTTTGATGGTAGTTATAAATAtttttcttctttcatttgtatttggtcatttgt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     474258 72 -    863181 agg----taattagCCCTCTGATTTTGATGGTAGTTGTAAATatttttcttctttcatttgtatttggtcatttgt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29623929 72 -  71996105 agg----taattagCCCTCTGATTTTGATGGTAGTTATAAATatttttcttctttcatttgtatttggtcatttgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     337730 72 -    735854 agg----taattagCCCTCTGATTTTGATGGTAGTTGTAAATatttttcttctttcatttgtatttggtcatttgt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     261548 72 -   1829203 ggg----taattagCCCTCTGATTTTGATGGTAGTTGTAAATATTTTTCTTCTTTCATTTGTATTTGGTCATTTGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30456590 61 + 171630274 GGGTGATTAATTAGCCCTATGATTTTGATGGCAGTTG---------------TTCCATTTTTATTTGGTCATTTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           268147 76 +    515838 gggtaattaATTGGTCCTTTGATTTTGATGGCAGTTGCAAATATTTTTCTTCTTCCATTTTTATTTGGTCATTTGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     897477 76 -   1771730 gggtaattaATTAACCCGTTGATTTTGATGGCAGTTGTAAACAATTTTCTTCTTCCATTTTTATTTGGTCATTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      72994 76 -    486031 gggtaattaattagccctttgattttgatggcagttgtgaatatttttcttcttccatttttgtttagtcatttgt
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     158116 67 -   1411461 agg----gaaattaccctttgattttgatggtagtcataaatgtttttc-----ccatttttatttggtcatttgt
i proCoq1.NW_012149775v1   I 28 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            15392 4744 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I

a score=1434392.000000
s hg38.chr6_GL000254v2_alt  1477977 141 +   4827813 CTCTTGACATTGCACTTACGG---TT---TTTTTTCCCCCATGCAGGTCTTTTTTAATGTGGCTGAATTTATCTTTCTTTCCTTTTATGGTTTCTACATTTGAAACATTCTCAAG---CTACTGCTAGTTAAATACAGTGGATTTCTGCC
s panTro5.chr6             30347406 140 + 175400573 CTCTTGACATTGTACTTATGG----T---TTTTTTCCCCCGTGCAGGTCTTTTTTAATGTGGCTGAATTTATCTTTCTTTCCTTTTATGGTTTCTACATTTGAAACATTCTCAAG---CTACTGCTAGTTAAATACAGTGGATTTCTGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30581749 140 + 173848474 CTCTTGACATTGTACTTATGG----T---TTTTTTCCCCCGTGCAGGTCTTTTTTAATGTGGCTGAATTTATCTTTCTTTCCTTTTATGGTTTCTACATTTGAAACATTCTCAAG---CTACTGCTAGTTAAATACAGTGGATTTCTGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     288817 140 +   2037526 CTCTTGACATTGCACTTATGG----T---TTTTTTCCCCTATGCAGGTCTTTTTTAATGTGGCTGAATTTATCTTTCTTTCCTTTTATGGTTTCTACATTTGAAACATTCTCAAG---CTACTGCTAGTTAAATACAGTGGATTTCTGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74955815 140 + 122973662 CTCTTGACATTGCACTTTTGG----T---TTTTTTCCCCCCTGCAGGTCTTTTTTAATGTGGTTGAATTAATCTTTCTTTCCTTTTATGGTTTCTACATTTGAAACATTCTCAAG---CTACTGCTAGTTAAATACAGTGGATTTCTGCC
i nomLeu3.chr1a            C 0 M 100
s rheMac8.chr4             30833854 143 + 172585720 ctcttgacattGCACTTAAGG----T---TTTTTTCCCCCGTGCAAGTCTTTTTTAATGTGGCTGAATTTATCTTTCTTTCCTTTTATGGTTTCTACATTTGAAACATTCTCAAGCTACTACTGCTAGTTAAACACAGTGGATTTCTGCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30123340 143 - 170955103 ctcttgacattGCACTTAAGG----T---TTTTTTCCCCCGTGCAAGTCTTTTTTAATGTGGCTGAATTTATCTTTCTTTCCTTTTATGGTTTCTACATTTGAAACATTCTCAAGCTACTACTGCTAGTTAAACACAGTGGATTTCTGCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     372259 143 +   1495729 ctcttgACATTGCACTTAAGG----T---TTTTTTCCCCCGTGCAAGTCTTTTTTAATGTGGCTGAATTTATCTTTCTTTCCTTTTATGGTTTCTACATTTGAAACATTCTCAAGCTACTACTGCTAGTTAAACACAGTGGATTTCTGCG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     474330 143 -    863181 ctcttgacattGCACTTAAGG----T---TTTTTTCCCCCGTGCAAGTCTTTTTTAATGTGGCTGAATTTATCTTTCTTTCCTTTTATGGTTTCTACATTTGAAACATTCTCAAGCTACTACTGCTAGTTAAACCCAGTGGATTTCTGCG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29624001 143 -  71996105 ctcttgacattGCACTTAAGG----T---TTTTTCCCCCCGTGCAAGTCTTTTTTAATGTGGCTGAATTTATCTTTCTTTCCTTTTATGGTTTCTACATTTGAAACATTCTCAAGCTACTACTGCTAGTTAAACACAGCGGATTTCTGCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     337802 143 -    735854 ctcttgacattGCACTTAAGG----T---TTTTTTCCCCCGTGCAAGTCTTTTTTAATGTGGCTGAATTTATCTTTCTTTCCTTTTATGGTTTCTACATTTGAAACATTCTCAAGCTACTACTGCTAGTTAAACCCAGTGGATTTCTGCG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     261620 141 -   1829203 CTCCTGACATTGCACTTACGG----T---TTTT--CCCCTGTGCAAGTCTTTTTTAATGTGGCTGAATTTATCTTTCTTTCCTTTTATGGTTTCTACATTTGAAACATTCTCAAGCTACTACTGCTAGTTAAACACAGTGGATTTCTGCG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30456651 134 + 171630274 CCCTCGTCACTGCACTTACAG----GTTTTTTTTTTCCCTGTGCAGATCTTTTTAAATGTGACTGAATTTATCTCTCTTTTCTTCTGTAGTTTCTACATTTGA---------AAG---CTAGTGCTAGTTAAATATAGTGGATTTCCACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           268223 140 +    515838 CTCTTGTCACTGCACTTATAG----G---TTTTTTTCCCTATGCAGATCTTTTTAAATGTGACTGAATTTATCTTTCTTTCCTTCTGTGGTTTCTACATTTGAAACATTCTGAAG---CTAGTGCTAGTTAAATACGGTGGATTTCCACC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     897553 139 -   1771730 CTCTTGTCACTGCGCTTACAG----G---TTTTTTGCCCTATGCAGATCTTTTTAAATGTGACTGAATTTATCTTTCTTTCCTTCTGTGGTTTCTACATTTGAAACATTCTGAAG---CTAGTGCTAGTTAAATGCAGTGGA-TTCCACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      73070 139 -    486031 ctcttatcactgcacttatag----g----ttttttccccgtgcagatctttttaaatgtgactgaatttatctttctttccttctgtgttgtctacatttgGAACATTCTGAAG---CTAGTGCTAGTTAAATTCAGTGGATTTCCACC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     158183 128 -   1411461 ctcttgacattgcttttgTAGGTTGT---TTTTTTTTTTCACGCAGATCTTTTTAAAGA----------------TCTTTCCTGTAATGGCTTCTACATTGGAAACATTCTCAAG---CTCGTGTTACTTAAATACAGTGgattcctgcc
i proCoq1.NW_012149775v1   C 0 C 0
s dasNov3.JH567297            20136 126 +     53444 CTCTTGACGTTGC------------T---TTTT-----CCATTCAGATGTTTTC-AGTGTGGTTGGATTTATTTGTCTTTCCTTTTATGGCTTCCATGTTTTGATCCTACTTAAG---CGAGTATTTCTTAAACACAGTAATTTCCTGTC
i dasNov3.JH567297         I 4744 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I

a score=433446.000000
s hg38.chr6_GL000254v2_alt  1478118 39 +   4827813 TTCAAGTTGCTCAATAAACCAGTAGGAAAATCAAGAAAA
s panTro5.chr6             30347546 39 + 175400573 TTCAAGTTGCTCAATAAACCAGTAGGAGAATCAAGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30581889 39 + 173848474 TTCAAGTTGCTCAATAAACCAGTAGGAGAATCAAGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     288957 39 +   2037526 TTCAAGTTGCTCAATAAACCAGTAGGAAAATCAAGAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30833997 39 + 172585720 TTCAAGTTTCTCAATAAGCCAGTAGGAAAATCAAGAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30123483 39 - 170955103 TTCAAGTTTCTCAATAAGCCAGTAGGAAAATCAAGAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     372402 39 +   1495729 TTCAAGTTTCTCAATAAGCCAGTAGGAAAATCAAGAAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     474473 39 -    863181 TTCAAGTTGCTCAATAAGCCAGTAGGAAAATCAAGAAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29624144 39 -  71996105 TTCAAGTTGCTCAATAAGCCAGTAGGAAAATCAAGAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     337945 39 -    735854 TTCAAGTTGCTCAATAAGCCAGTAGGAAAATCAAGAAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     261761 39 -   1829203 TTCAAGTTGCTCAATAAGCCAGTAGGAAAATCAAGAAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30456785 39 + 171630274 TTCAAGTTACTCACTAAGCTGGCAGGAAAATCAAGAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           268363 39 +    515838 TTCAAGTTGCTCAATAAGCCAGTAGGAAAATCAAGAAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     897692 39 -   1771730 TTCAAGTTGCTCAATAAGCCAGTAGGAAAATCAAGGAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      73209 39 -    486031 TTTAAGTTGCTCAATAAGCCAATAGGAAAATCAAGAAAA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     158311 39 -   1411461 ttcaagtggctcaataagctggtagaaaaatcaagaaaa
i proCoq1.NW_012149775v1   C 0 I 1835
s dasNov3.JH567297            20262 38 +     53444 TTCAA-TTGCTCAATGAGGCAACAGGAAAATCAAGAAAG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I
e nomLeu3.chr1a            74955955 100 + 122973662 M

a score=808158.000000
s hg38.chr6_GL000254v2_alt  1478157 89 +   4827813 GTACCTAAGTAACTAGTAGAAGTTACTATATAGTCAGTACTATAAGTTGGTACAAAGTGCTGTTTCTTcatctgtctatccatacatct
s panTro5.chr6             30347585 89 + 175400573 GTACCTAAGTAACTAGTAGAAGTAACTATATAATCAATACTATAAGTTGGTACAGAGTGCTGTTTCTTtatctgtctatccatacatct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30581928 89 + 173848474 GTACCTAAGTAACTAGTAGAAGTAACTATATAATCAATACTATAAGTTGGTACAGAGTGCTGTTTCTTtatctgtctatccatacatct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     288996 89 +   2037526 GTACCTAAGTAACTAGTAGAAGTTACTATATAATCAGTACTATAAGTTGGTACAAAGTGCTGTTTCTTCAGCTGTCTATCCATACATCT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30834036 89 + 172585720 GTACCTAAGTAACTAGTAGAAGTTACTATATGATCAATACTGTAAGTTGGTACAAAGTGCTATTTCTTCATCTGTCTATCCATACATCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30123522 89 - 170955103 GTACCTAAGTAACTAGTAGAAGTTACTATATGATCAATACTGTAAGTTGGTACAAAGTGCTATTTCTTCATCTGTCTATCCATACATCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     372441 89 +   1495729 GTACCTAAGTAACTAGTAGAAGTTACTATATGATCAATACTGTAAGTTGGTACAAAGTGCTATTTCTTCATCTGTCTATCCATACATCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     474512 89 -    863181 GTACCTAAGTAACTAGTAGAAGTTACTATATGATCAATACTGTAAGTTGGTACAAAGTGCTATTTCTTCatctgtctatccatacatct
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29624183 89 -  71996105 GTACCTAAGTAACTAGTAGAAGTTACTATATGATCAATACTGTAAGTTGGTACAAAGAGCTATTTCTTCATCTGTCTATTCATACATCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     337984 89 -    735854 GTACCTAAGTAACTAGTAGAAGTTACTATATGATCAATACTGTAAGTTGGTACAAAGTGCTATTTCTTCatctgtctatccatacatct
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     261800 89 -   1829203 GTACCTAACTAACGAGTAGAAGTTACTATATGATCAGTACTATAAGTTGGTACAAAGTGCTATTTCTTCATCTGTCTATCCATATATCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30456824 89 + 171630274 GTACCTAAATAATCAGTAGACGTTACTATATAATCAATACTATGAGGTGGTACAACGTGctgtttcttcatctgtctatccatacatct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           268402 85 +    515838 GCACC----TAATCAGTAGAAGTTACTATATAATCAATACTATGAGTTGGTACAACACGctgtttcttcatctgtctatccgtatgtct
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     897731 85 -   1771730 GCACC----TAATCAGTAGAAGTTACTACATAATCAATACTATGAGTTGGTACAACGTGCTGTTTCTTCATCTGTCTATCCATATATCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      73248 89 -    486031 GTACCTAAATAATCAGTAGAAGTTACTATATAATCAATACTATGAGTTGGTACAACATGCTGTTTCTTCATCTGTCTATCCACACATCT
i aotNan1.NW_018496901v1   C 0 C 0
s dasNov3.JH567297            20300 80 +     53444 --GCC-------ATAATAGGAGTTACCATACGATCAGTACTCTAAGGTGGTACAGGGTGCTATTTCTTCATCTCTCTGTCCAGCCATCC
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e proCoq1.NW_012149775v1     158350 1835 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I
e nomLeu3.chr1a            74955955 100 + 122973662 M

a score=5312826.000000
s hg38.chr6_GL000254v2_alt  1478246 509 +   4827813 aattatcaatctatctgtccatctgtccattaatccatccatTTATCAAGCTTTTACTGAATCCTTTCTAAGAGCAAAAAAAGGTATATATAGAGAGATGACATTTTatggtaatgaagcccatgggctgcgataagagacacccagatctgaatcccagctctatgtttacaccactgtggccttgggcaggttacttaatctgtccacatttttgtttcttATACTATTTCATGAGATACGACAGGAACGTAGATTGTGGAGGGGTCAAGGATTGAAGGTTAAAAAAC-AGACATTGTCGGAAATGCCTTAGGAAGAGAACTATAAGTGAGTACAATGCCTACATTTATAATTTCAGGTGGTGAAATCTGAATCCtgacaaggtcaagagagtggccactagggtgggtggcaaaagcaaaggtcattggatgtgagcaggacaa-gaactgaaaggccttggtgttaaatgatca---tgtacgtagtctttgaaatcacca-ggaTCATGG
s panTro5.chr6             30347674 510 + 175400573 aattatcaatctatctgtccatctgtccattaacccatccatttatcAAGCTTTTACTGAATTCTTTCTAAGAGCGAGAAAAGGTATGTATAGAGAGATGACATTTTATGGTAATGAAGCCTGTgggctgggatgagagacacccggatctgaatcccagctctatgtttacaccactgtggccttgggcaggttacttaatctgtccacatttttgtttcttATACTATTGCATGAGCTATGACAGGAACGTAGATTGTGGAGGGGTCAAGGATTGAAGGTTAAAAAAC-AGAAGTTGTTGGAAATGGCTTAGGAAGAAAACTATAAGTGAGTAAAATGCCTAGATTTGTAATTTCAGGTGGTGAAATCTGAATCCtgataaggtcaagagagtggccactagggtgggtggcaaaagcaaaggtcattggatgtgagcaggacaaggaactgaaaggccttggtgttaaatgatca---tgtacatagtctttgaaatcacca-ggaTCATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30582017 510 + 173848474 aattatcaatctatctgtccatctgtccattaacccatccatttatcAAGCTTTTACTGAATTCTTTCTAAGAGCGAGAAAAGGTATGTATAGAGAGATGACATTTTATGGTAATGAAGCCTGTgggctgggatgagagacacccggatctgaatcccagctctatgtttacaccactgtggccttgggcaggttacttaatctgtccacatttttgtttcttATACTATTGCATGAGCTATGACAGGAACGTAGATTGTGGAGGGGTCAAGGATTGAAGGTTAAAAAAC-AGAAGTTGTTGGAAATGGCTTAGGAAGAAAACTATAAGTGAGTAAAATGCCTAGATTTGTAATTTCAGGTGGTGAAATCTGAATCCtgataaggtcaagagagtggccactagggtgggtggcaaaagcaaaggtcattggatgtgagcaggacaaggaactgaaaggccttggtgttaaatgatca---tgtacatagtctttgaaatcacca-ggaTCATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     289085 510 +   2037526 AATTATCAATCTATCTGTCCATCTGTCCATTAACCCATCCATTTATCAAGCTTTTACTGAATTCTTTCTAACAGCAAGAAAAGGTATATATAGAGAGATGACATTTTatggtaatgaagcccatgggctgggatgagagacacccagatctgaatcccagctctatgtttacaccactgtggccttgggcaggttacttaatctgtccacatttttgtttcttATACTATTTCATGAGATACGACAGGAACGTAGATTGTGGAGGGGTCAAGGATTGAAGGTTAAAAAAC-AGACACTGTCGGAAATGGCTTAGGAAGAGAACTATAAGTGAGTACAATGCCTACATTTATAATTTCAGGTGGTGAAATCTGAATCCtgacaaggtcaagagagtggccactagggtgggtggcaaaagcaaaggtcattggatgtgagcaggacaaggaactgaaaggccttggtgttaaatgatca---tgtacatagtgtttgaaatcacca-ggaTCATGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74956055 509 + 122973662 AATTATC-ATCTATCTGTCCATCTGTCCATTAACCCATCCATTTATCAAGCTTTTGCTGAATTCTTTCTAAGAGCAAGAAAAGGTATATAGAGAGAGATGACATTTTATGGTAATGAAGCCTGTgggctgggatgagagacacccagatctaaatcccagctctatgtttacaccacagtggccttgggcaggttacttaatctgtccacatttttgtttcttATATTATTTCGTGAGATATGACAggaacgtagattgtggaggggtcaaggattgaaggttaaaaaac-agatgttgtcggaaatggcttaggaagagaactataagtgagtacaatgcctagatttgtaatttcaggtggtgaaatctgaatcctgacaagatcaagagagtggccactagggtgggtggcaaaagcaaaggtcactggatgtgagcaggacaaggaactgaaaggccttggtgttaaatgatca---tgtacacagtctttgaaatcacca-ggaTCATGG
i nomLeu3.chr1a            M 100 C 0
s rheMac8.chr4             30834125 509 + 172585720 AATTATCAATCTATCTGTCCATCTGTCCACTAACCTATCCATTTATCAAACTTTTACTGAATTCTTTCTAAGAACAAGAAAAGTTAGATATAGAGAGATGACATTTTatggtaatgaagcccatgggctgggatgagagacacccagatctgaatcctagctctgtgtttacaccactgtggccttgggcaggttacttaatctgtccatatttttgtttcttGTATTATTTCATGAGATATGACAGGAACGTAGATTGTGGAGGGGTCAAGGATTGAAGGTTAAAAAAC-AGATGTTGCCGGAAATGGCTTAGGAAGATAACTATAAGTGAGTACAATGCCTAGATTTGTCATTTCAGGTGATGAAATCTGAATCCtgacaaggtcaagagagtgg-cactagggtgggtggcaaaagcaaaggtcactggatgtgagtaggacaatgaactgaaaggccttggtgttaaatgatca---tgtacatagtctttgaaatcacca-ggaTCATGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30123611 509 - 170955103 AATTATCAATCTATCTGTCCATCTGTCCACTAACCTATCCATTTATCAAACTTTTACTGAATTCTTTCTAAGAACAAGAAAAGGTAGATATAGAGAGATGACATTTTATGgcaatgaagcccatgggctgggatgagagacacccagatctgaatcctagctctgtgtttacaccactgtggccttgggcaggttacttaatctgtccatatttttgtttcttGTATTATTTCATGAGAAATGACAGGAACGTAGATTGTGGAGGGGTCAAGGATTGAAGGTTAAAAAAC-AGATGTTGCCGGAAATGGCTTAGGAAGATAACTATAAGTGAGTACAATGCCTAGATTTGTCATTTCAGGTGATGAAATCTGAATCCTGACAAGGTCAAAAgagtgg-cactagggtgggtggcaaaagcaaaggtcactggatgtgagtaggacaacgaactgaaaggccttggtgttaaatgatca---tgtacatagtctttgaaatcacca-ggaTCATGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     372530 508 +   1495729 AATTATCAATCTATCTGTCCATCTGTCCACTAACCTATCCATTTATCAAACTTTTACTGAATTCTTT-TAAGAACAAGAAAAGGTAGATATAGAGAGATGACATTTTATGgcaatgaagcccatgggctgggatgagagacacccagatctgaatcctagctctgtgtttacaccactgtggccttgggcaggttacttaatctgtccatatttttgtttcttGTATTATTTCATGAGATATGACAGGAACGTAGATTGTGGAGGGGTCAAGGATTGAAGGTTAAAAAAC-AGATGTTGCCGGAAATGGCTTAGGAAGATAACTATAAGTGAGTACAATGCCTAGATTTGTCATTTCAGGTGATGAAATCTGAATCCtgacaaggtcaagagagtgg-cactagggtgggtggcaaaagcaaaggtcactggatgtgagtaggacaacgaactgaaaggccttggtgttaaatgatca---tgtacatagtctttgaaatcacca-ggaTCATGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     474601 509 -    863181 aattatctatctatctgtccatctgtccactaacccatccatttatcaaacttttactgtattctttctaAAAACAAGAAAAAGTAGATAtagagagatgacattttatggtaatgaagccaatgggctgggatgagagacacccagatctgaatcctagctctgtgtttacaccactgtggccttgggcaggttacttaatctgtccatatttttgtttcttGTATTATTTCATGAGATATGACAggaacgtagattgtggaggggtcaaggattgaaggttaaaaaac-agatgttgccggaaatggcttaggaagataactataagtgagtacaatgcctagatttgtcatttcaggtgatgaaatctgaatcctgacaaggtcaagagagtgg-cactagggtgggtggcaaaagcaaaggtcactggatgtgagtaggacaacgaactgaaaggccttggtgttaaatgatca---tgtacatagtctttgaaatcaccg-ggaTCATGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29624272 505 -  71996105 AAT----TATCTATCTGTCCATCTGTCCACTAATCTATCCATTTATCAAACTTTTACTGAATTCTTTCTAAGAACAAGAAAAGGTAGATATAGAGAGATGACATTTTATGGTAATGAAGCCcatgggctgggatgagagaaacccagatctgaatcctagctctgtgtttacaccactgtggccttgggcaggttacttaatctgtccatatttttgtttcttGTATTATTTCATGAGATATGACAGGAACGTAGATTGTGGAGGGGTCAAGGATTGAAGGTTAAAAAAC-AGATGTTGCCGGAAATGGCTTAGGAAGAGAACTATAAGTGAGTACAATGCCTAGATTTGTCATTTCAGGTGATGAAATCTGAATCCTGACAAGGTCAagagagtgg-cactagggtgggtggcaaaaacaaaggtcactggttgtgagtaggacaacgaactgaaaggccttggtgttaaatgatca---tgtacatagtctttgaaatcacca-ggaTCATGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     338073 509 -    735854 aattatctatctatctgtccatctgtccactaacccatccatttatcaaacttttactgtattctttctaAAAACAAGAAAAAGTAGATATAGAGAGATGACATTTTATGGTAATGAAGCCAatgggctgggatgagagacacccagatctgaatcctagctctgtgtttacaccactgtggccttgggcaggttacttaatctgtccatatttttgtttcttGTATTATTTCATGAGATATGACAGGAACGTAGATTGTGGAGGGGTCAAGGATTGAAGGTTAAAAAAC-AGATGTTGCCGGAAATGGCTTAGGAAGATAACTATAAGTGAGTACAATGCCTAGATTTGTCATTTCAGGTGATGAAATCCGAATCCtgacaaggtcaagagagtgg-cactagggtgggtggcaaaagcaaaggtcactggatgtgagtaggacaacgaactgaaaggccttggtgttaaatgatca---tgtacatagtctttgaaatcactg-ggaTCATGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     261889 511 -   1829203 AATTATCAATCTATCTGTCCATCTGTCCACTAACCTATCCATTTATCAAACTTTTACTGAATTCTTTCTAAGAGCAAGAAAAGGTATATATAGAGAGATGACATTTTatggtaatgaagcccatgggctgggatgagagacacccagatctgaagcctagctctatgtttacaccactgtggccttgggcaggttacttaatacgtccacatttttgtttcttATATTATTTCATGAGGTATGACAGGAACGTAGATTGTGGAGGGGTCAAGGATTGAAGGTTAAAAAACAAGACGTTGCTGGAAATGGCTTAGGAAGAGAACTATAAGTGAGTACAATGCCTAGATTTGTCATTTCAGGTGATGAAATCTGAATCCtgacaaggccaagagagtggccactagggtgggtggcaaaagcaaaggtcattggatgtgagtaggacaaggaactgaaaggccttggtgttaaatgatca---tgtacatagtctttgaaatcacca-ggaTCATGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30456913 492 + 171630274 aattatcaatctatttgcccatctgtccattaacccattcacttatGAAGCTTTTACTGAATTCTTTCTAAAAGCAAGAAAAGgta--t-------------attt--tgataatgaagcccgtgggctgggatgacagacattcagatctgaatcccaactctgatcttacaccactgtggtcttgggcaggttacttaatctgtccacatttttgtttcttATGTTATTTTATGAGATATGACAGACAtgtagattgtggaggggtcaaggattgaaggttaaagatc-agatgttgtaagaaacggcttaggaagagaactataagtgagtacaatgcctagatttttaatttcaggtggtgaaatctgaatcctgactagatcaagagagtggccactagggtgggtggcaaaagtaaaggtcactggacgtgagcaggacaaggaactgaaaggccttggtgttatatgatca---tgtatacgg-ctttaaaatcacca-ggaTCATGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           268487 505 +    515838 aatcatcaatctatttgtccatctgtccattaacccattcacttatcAAGCTTTTACTGAATTCTTTCTAAAAGCAAGAAAAGGTA--TATAGAGAGACGACATTT--TGATAATGAAACCCGtgggctgggatgacagacattcagatccgcttcccagctctgatcttacacaactgtgttcttgggcaggttacttaatctgtccacatttttgtttcttATGTTATTTCATGAGATATGACAGACATGTAGATTGTGGAGGGGTCAAGGATTGAAGGTTAAAGATC-AGATGTTGTAAGAAACGGCTTAGGAAGAGAACTATAAGTGAGTACACTGCCTAGATTTTTAATTTCAGGTGGTGAAATCTGAATCCtgacaaggtcaagagagtggccactagggtgggtggcaaaagtaaaggtccttggatgtgagcaggacaaggaactgaaaggccttggtgttatatgatca---tgtatatag-ctttgaaatcacca-ggaTCACGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     897816 497 -   1771730 AATTATCAATCTATGTGTCCATCTGTCCATTAACCCATTCACTTATCAAGCTTTTCCTGAATTCTTTCTAAAAGCAAGAAAAGGTA--TATagagagatgacattt--tgataatgaagcccgtgggctgggatgacagacattcagatctgcttcccagttctgatcttacaccactgtggtcttgggcaggttacttaatctgtccacatttttgtttcttATGTTATTTCATGAGATGCGACAGACATGTAGATTGTGGAGGGGCCAAGGATTGAAGGTTAAAGATC-AG------------ACGGCTTAGGAAGAGAACTATAAGTGAGTACACTGCCTAGATTTTTAATTTCAGGTGGTGAAATCTGAATCCtgacaaggtcaagagagtggccactagggtggttggccaaagtaaaggtcattggatgtgagcaggacaaggaactgaaaagccttggtgttatatgatcatgttgtatatggtctttgaaatcacca-gagtcatgG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      73337 505 -    486031 AATTTTCAATCTATTTGTCCATCTGTCCATTAACACATTCACTTATCAAGCTTTTACTGAATTCTTTCTAAAAGCAAGAGAAGGTA--TATAGAGAGATGACATTT--TGATAATGAAGCCTGTGGGCTGGGATGAcagacattcagatctgcatcccagctctaatcttacaccactgtggtcttgggcaggttacttactctgtccacatttttgtttcttATGTTATTTCATGAGATACGACAGAAATGTAGATTGTGGAGGGGTCAAGGATCAAAGGTTAAAGAAC-AGATGTTGTAGGAAATGGCTTAGGAAGAGAACTATAAGTGAGTACACTGCCTAGATTTTTAATTTCAGGTGGTGAAATCTGAATCCtgacaaggtcaagaga-tggccactaggatgggtggcaaaagtaaaggtcattggatgtgagcaggacaaggaactgaaaagccttggcgttatatgatca---tgtatacggtctttgaaatcacca-ggaTCATGG
i aotNan1.NW_018496901v1   C 0 C 0
s dasNov3.JH567297            20380 491 +     53444 -ATTGTTACTC----TGTCCATCTGTCCATTCACCTACCCATTCTTCAAGGTTTTCCTGGACTCTTTCTAAGGACAAGGAAAG---TGTGAagagagatggtattttgtggtgatagagcacacaggctaggatgggagacatccagatctgaacctcagctcaacatttactcttccatggctttgggaaggctgcttaatctctcAACATTTATGTCTCTCCTATGTGCCTGTGAGGTATTTCACAAATGTagaaggtggggggcttaagggttagaggttgaagaac-agctgtggcatga-gtagcttagggagagatgta-aggtgagtataatgcctgggttagcgatttcaggtggtgtaatctggattctgacaaggtccagggagtggccactgaggtgggtgacaaaagggaaggtcattggatgtgagcaggtcaaggaacctagggggcctagtgttagaaggtca---t----------cctgaaatcaccctggatgatgg
i dasNov3.JH567297         C 0 I 691
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e proCoq1.NW_012149775v1     158350 1835 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I

a score=2582421.000000
s hg38.chr6_GL000254v2_alt  1478755 264 +   4827813 TAATTTCacagccagatgaaggg----------caagttctgggaggatcctgagcacaggagcttctgtccccggtggagtgtgggatgtgccaccctcccagcatgtggatgcactcaccaacctggaatctctccaaacctctttgttcaggatcttacagaggttccattatttaggtatgattgatcaaatcactggctgttggtgattaactcagtccctgggctcctctcccctccccagaggtcagaggtgagactgaaagttcca
s panTro5.chr6             30348184 264 + 175400573 TGATTTCACACCCAGATGAaggg----------caagttctgggaggatcctgagcacaggagcttctgtccccggtggagtgtgggatgtgccaccctcccagtgtgtggatgcacttaccaacctggaatctctccaaacctctttgttcaggatcttacagaggttccactatgtaggtacaattgatcaaatcactggctgttggtgattaactcagtccccgggctcctctcccctccccagaggtcagaggtgggactgaaagttcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30582527 264 + 173848474 TGATTTCACACCCAGATGAaggg----------caagttctgggaggatcctgagcacaggagcttctgtccccggtggagtgtgggatgtgccaccctcccagtgtgtggatgcacttaccaacctggaatctctccaaacctctttgttcaggatcttacagaggttccactatgtaggtacgattgatcaaatcactggctgttggtgattaactcagtccccgggctcctctcccctccccagaggtcagaggtgggactgaaagttcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     289595 264 +   2037526 TAATTTCACTGCCAGATGAaggg----------caagctctgggaggatcctgagcacaggagcttctgtccccagtggagtgtgggatgtgccaccctcccagcgtgtggatgcactcaccaacctggaatctctccaaacctctttgttcaggatcttacagaggttccattatgtaggtatgattgatcaaatcactggctgttggtgattaactcagtccctgggcccctctcccctccccagaggttaaaggtgagactgaaagttcca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74956564 264 + 122973662 TGATTTCacagccagatgaagga----------caaggtctgggaggatcctgagcacgggagctcctgtccccggtggagtgtgggatgtgccaccctcccagtgtgtggatgcactcaccaacctggaatctctccaaacctctttgtttaggatcttacagaggttccattatgtaggtatgattgatcaaatcactggctgttggtgattaactcagtccctgggctcctctgccctccccagaggtcagaggtgagactgaaagttcca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30834634 264 + 172585720 TGATTTCacagccagatgaaggg----------caaagtctgggaggatcctgagcacaggagcttctgtcctgggtggagtgtgggatgtgccaccctcccagcgtgtggatgcgctcaccaacctggaatctctccaaacctctttgtttagggtcttacagaggttccattatgtaggtatgattgatcaaatcactggctgttggtgattaactcagcccctgggctcctctcccctccccacaggtcagaggtgagactaaaagttcca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30124120 264 - 170955103 TGATTTCacagccagatgaaggg----------caaagtctgggaggatcctgagcacaggagcttctgtcctgggtggagtgtgggatgtgccaccctcccagcgtgtggatgcgctcaccaacctggaatctctccaaacctctttgtttagggtcttacagaggttccattatgtaggtatgattgatcaaatcactggctgttggtgattaactcagcccctgggctcctctcccctccccacaggtcagaggtgagactgaaagttcca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     373038 264 +   1495729 TGATTTCacagccagatgaaggg----------caaagtctgggaggatcctgagcacaggagcttctgtcctgggtggagtgtgggatgtgccaccctcccagcgtgtggatgcgctcaccaacctggaatctctccaaacctctttgtttagggtcttacagaggttccattatgtaggtatgattgatcaaatcactggctgttggtgattaactcagcccctgggctcctctcccctccccacaggtcagaggtgagactgaaagttcca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     475110 264 -    863181 TGATTTCacagccagatgaaggg----------caaagtctgggagaatcctgagcacaggagcttctgtcctgggtggggtgtgggatgtgccaccctcccagggtgtggatgcgctcaccaacctggaatctctccaaacctctttgtttagggtcttacagaggttctattatgtaggtatgattgatcaaatcactggctgttggtgattaactcagcccctgggctcctctcccctccccacaggtcagaggtgagactgaaagttcca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29624777 263 -  71996105 TGATTTCacagccagatgaaggg----------caaagtctgggaggatcctgagcacaggagcttctgtcctgggtggagtgtgggatgtgccaccttcccagtgtgtggatgcgctcaccaacctggaatatctccaaacctctttgtttagggtcttacagaggttctattatgtaggtatgattgatcaaatcactggctgttggtgattaactcagcccctgggctcctctcccctccccacaggtcagagatgagactgaaagtt-ca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     338582 264 -    735854 TGATTTCacagccagatgaaggg----------caaagtctgggagaatcctgagcacaggagcttccgtcctgggtggagtgtgggatgtgccaccctcccagcgtgtggatgcgctcaccaacctggaatctctccaaacctctttgtttagggtcttacagaggttctattacgtaggtatgattgatcaaatcactggctgttggtgattaactcagcccctgggctcctctcccctccccacaggtcagaggtgagactgaaagttcca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     262400 264 -   1829203 TGATTTCacagccagatgaaggg----------caaagtctgggaggatcctcagcacaggagcttctgtcctgggtggagtgtgggatgtgccaccctcacagcgtgtggatgcgctcaccaacctggaatctctccaaacatctttgtttagggtcttacagaggttccattatgtaggtatgattgatcaaattactggctgttggtgattaactcagcccctaggctcctctcccctccccacaggtcagaggtgagactgaaagttcca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30457405 253 + 171630274 TGATTTCATGGCCAGATGAAGGGGTACACA-------------------TCTGAGCACAGGAGCTGCTGTCCCTGGTGGAGTGTGggatgtgccaccctcccagcatgttgatgcactcaccaacctggaatctcttcaaacttctttgtttagggtcttacggagattccatgatttaggtatgattgattaa-ttactggccattggcgattaactcagtccctgggctcctctcctctccccaga-gtcaaaggtgagaatgaaagttcca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           268992 255 +    515838 TGATTTCATGGCCAGATGAGGGGGTACACA-------------------TCTGAGCACAGGAGCTGCTGTCCCCGGTGGAGTGAGggatgtgccaccctcccagcatgtggctgcactcatcaacctggaatctctccaaacttctttgtttagggtcttacggagattccatgatttaggtatgattgattaagttactggccattggtgattaacccagtccctgggctcctttcccctccccagaggtcaaaggtgagaatgaaagttcca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     898313 274 -   1771730 TGATTTCacggccagatgaaggggtacacagggcaaagtccaggaggatcctgagcacaggagctgctgtccccagtggagtgtgggatgtgccaccctcccagcatgtggctgcactcaccaacctggaatctccccaaacctctttgtttagggacttacagagattccatgatttaggtatgattgattaaattactggccgttggtgattaacccagtccctgggctcctctcccctccccagaggtcaaaggtgagaatgaaagttcca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      73842 274 -    486031 TGATTTCATGgccagatgaaggggtacacagggcaaagtccgggaggatcctgagcacaggagctgctgtccctggtggagtgtgggatgtgccaccctcccagcatgtggatgcactcactaacctggaatctctccaaacctctttgcttagggtcttacggagattccaagatttagatatgattgattaaactactggctgttggtgattaactcagtccctgggctcctctcccctccccagaggtcaaaggtgagaatgaaagttcca
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            20871 691 +     53444 I
e proCoq1.NW_012149775v1     158350 1835 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           307180 430 +  18854210 I

a score=10491.000000
s hg38.chr6_GL000254v2_alt  1479019 2 +   4827813 ac
s panTro5.chr6             30348448 2 + 175400573 ac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30582791 2 + 173848474 ac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     289859 2 +   2037526 ac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74956828 2 + 122973662 ac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30834898 2 + 172585720 ac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30124384 2 - 170955103 ac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     373302 2 +   1495729 ac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     475374 2 -    863181 ac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29625040 2 -  71996105 ac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     338846 2 -    735854 ac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     262664 1 -   1829203 a-
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1     898587 2 -   1771730 ac
i cebCap1.NW_016107755v1   C 0 I 27
s aotNan1.NW_018496901v1      74116 2 -    486031 ac
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            20871 691 +     53444 I
e proCoq1.NW_012149775v1     158350 1835 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           269247 0 +    515838 C
e otoGar3.GL873550           307180 430 +  18854210 I
e calJac3.chr4             30457658 0 + 171630274 C

a score=6228.000000
s hg38.chr6_GL000254v2_alt  1479021 1 +   4827813 c
s panTro5.chr6             30348450 1 + 175400573 c
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30582793 1 + 173848474 c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     289861 1 +   2037526 c
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74956830 1 + 122973662 c
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30834900 1 + 172585720 c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30124386 1 - 170955103 c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     373304 1 +   1495729 c
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     475376 1 -    863181 c
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29625042 1 -  71996105 c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     338848 1 -    735854 c
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     262665 1 -   1829203 t
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496901v1      74118 1 -    486031 c
i aotNan1.NW_018496901v1   C 0 I 15
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            20871 691 +     53444 I
e proCoq1.NW_012149775v1     158350 1835 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           269247 0 +    515838 C
e otoGar3.GL873550           307180 430 +  18854210 I
e cebCap1.NW_016107755v1     898589 27 -   1771730 I
e calJac3.chr4             30457658 0 + 171630274 C

a score=166430.000000
s hg38.chr6_GL000254v2_alt  1479022 29 +   4827813 agccaggcgtggtggttcacgcctgtaat
s panTro5.chr6             30348451 29 + 175400573 ggccaggcgtggtggctcacgcctgtaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30582794 29 + 173848474 ggccaggcgtggtggctcacgcctgtaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     289862 29 +   2037526 agccaggcgtggtggttcacgcctgtaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74956831 29 + 122973662 ggccgggcatggtggctcacacctataat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30834901 29 + 172585720 agccaggtgtggtggctcacgcctgtaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30124387 29 - 170955103 agccaggtgtggtggctcacgcctgtaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     373305 29 +   1495729 agccaggtgtggtggctcacgcctgtaat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     475377 29 -    863181 agccaggtgtggtggctcacgcctgtaat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29625043 29 -  71996105 ggccaggtgtggtggctcacgcctgtaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     338849 29 -    735854 AGCCAGGTGTGGTGGCTCACGCCTGTAAT
i manLeu1.NW_012107142v1   C 0 M 500
s colAng1.NW_012115577v1     262666 29 -   1829203 ggccaggtatggtggctcacgcctgtaat
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            20871 691 +     53444 I
e proCoq1.NW_012149775v1     158350 1835 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           269247  0 +    515838 C
e otoGar3.GL873550           307180 430 +  18854210 I
e aotNan1.NW_018496901v1      74119 15 -    486031 I
e cebCap1.NW_016107755v1     898589 27 -   1771730 I
e calJac3.chr4             30457658  0 + 171630274 C

a score=1260689.000000
s hg38.chr6_GL000254v2_alt  1479051 285 +   4827813 cccagcattttgggaggccaaggcaggcaggtaacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaatattagctgggcatggtggtgtgcacctgtaatcccagctactcggga-------------------------ggctgaggcaggagattcgctggaacctgggaggcagaggttgcagtgagctgagatagtgccgttgcactccagcttgggcaacaagagtgaaactc--tgtctc--aaaaaaaaaaaaaagaaagaaagaaagaaa
s panTro5.chr6             30348480 282 + 175400573 cccagcattttgggaggccaaggcaggcagataacctgaagtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaatattagctgggcatggtggtgtgcacctgtaatcccagctactcggga-------------------------ggctgaggcaggagattcactggaacctgggaggcagaggttgcagtgagctgagatagtgccattgcactccagcttgggcaacaagagtgaaactc--tgtctc-----aaaaaaaaaaagaaagaaagaaagaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30582823 284 + 173848474 cccagcattttgggaggccaaggcaggcagataacctgaagtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaatattagctgggcatggtggtgtgcacctgtaatcccagctactcggga-------------------------ggctgaggcaggagattcgctggaacctgggaggcagaggttgcagtgagctgagatagtgccattgcactccagcttgggcaacaagagtgaaactc--tgtcta---caaaaaaaaaaaagaaagaaagaaagaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     289891 283 +   2037526 cccagcattttgggaggccaaggcaggcaggtaacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaatattagctgggcatggtggtgtgcacctgtaatcccagctactcggga-------------------------ggctgaagcaggagaatcgctggaacctgggaggcagaggttgcagtgagctgagatagtgccattgcactccagcttgggcaacaagagtgaaactc--tgtctc----aaaaaaaaaaaaaaaagaaagaaagaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74956860 313 + 122973662 cccagcattttgggaggccaaggcaggcaggtaacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctgtactaaaaatacaaaatattagctgggcatggtggtgtgcacctgtaatcccagctactcgggattacacctttaatcccagctactcctgctgagtcaggagaatcgcttgaacctgggaggcagaggttgcagtgagctgagatagtgccattgcactccagcttgggcaacaagagtgaaactct-tgtctcaaaaaaaaaaaaaaaaaaacgaaagaaagaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30834930 271 + 172585720 cccagcattttgggagggcgaggcaggcagatcacctgagatcaggagttcgagaccagcctggccaacatggtgaaactccgtctctactaaaaatataaaatattagttgggcatagtggtatgcacctgtaatcccagctactcagga-------------------------ggctgaggcaggagaattgcttgaacctggaaggcagaggtttcggtgagctgagatagtgccattgcactctagcttgggcaacaagagtgaaactc--tgtctc----------------aaaaaaaaaaaagaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30124416 270 - 170955103 cccagcattttgggagggcgaggcaggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaactccgtctctactaaaaatataaaatattagttgggcatagtggtatgcacctgtaatcccagctactcagga-------------------------ggctgaggcaggagaattgcttgaacctggaaggcagaggtttcggtgagctgagatagtgccattgcactctagcttgggcaacaagagtgaaactc--tgtctc-----------------aaaaaaaaaaagaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     373334 270 +   1495729 cccagcattttgggagggcgaggcaggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaactccgtctctactaaaaatataaaatattagttgggcatagtggtatgcacctgtaatcccagctactcagga-------------------------ggctgaggcaggagaattgcttgaacctggaaggcagaggtttcggtgagctgagatagtgccattgcactctagcttgggcaacaagagtgaaactc--tgtctc-----------------aaaaaaaaaaagaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     475406 272 -    863181 cccagcattttgggagggcgaggcaggcagatcacctgaggtcaggagttcgagaccggcctggccaacatggtgaaactccgtctctactaaaaatacaaaatattagttgggcatagtggtatgcacctgtaatcccagctactcagga-------------------------ggctgaggcaggagaattgcttgaacctggaaggcagaggtttcggtgagctgagatagtgccattgcactctagcttgggcaacaagggtgaaactctgtgtctc-----------------aaaaaaaaaaagaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29625072 270 -  71996105 cccagcattttgggagggcaaggcaggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaactccgtctctactaaaaatataaaatattagttgggcatagtggtgtgcacctgtaatcccagctactcagga-------------------------ggctgaggcaggagaattgcttgaacctggaaggcagaggtttcggtgagctgagatagtgccattgcactctagcttggacaacaagagtgaaactc--tgcctc-----------------aaaaaaaaaaagaaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     262695 269 -   1829203 cccagcattttgggagggcgaggcaggcagatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaactccatctctactaaaaatacaaaatattagctgggcatagtggtgtgcacctgtaatcccagctacttggga-------------------------ggctgaggcaggagaattgcttgaacctgggaggcagaggttttggtgagctgagatagtgccattgcactccagcttgggcaacaagagtgaaactc--tgtctc------------------aaaaaaaaaagaaa
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            20871 691 +     53444 I
e proCoq1.NW_012149775v1     158350 1835 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           269247   0 +    515838 C
e otoGar3.GL873550           307180 430 +  18854210 I
e aotNan1.NW_018496901v1      74119  15 -    486031 I
e cebCap1.NW_016107755v1     898589  27 -   1771730 I
e calJac3.chr4             30457658   0 + 171630274 C
e manLeu1.NW_012107142v1     338878 500 -    735854 M

a score=56881.000000
s hg38.chr6_GL000254v2_alt  1479336 10 +   4827813 gaaagatccc
s panTro5.chr6             30348762 10 + 175400573 gaaagttccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30583107 10 + 173848474 gaaagttccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     290174 10 +   2037526 gaaagttctc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74957173 10 + 122973662 gaaagttccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30835201 10 + 172585720 gaaagttccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30124686 10 - 170955103 gaaagttccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     373604 10 +   1495729 gaaagttccc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     475678 10 -    863181 gaaagttccc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29625342 10 -  71996105 gaaagttccc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     262964 10 -   1829203 gaaagttccc
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           307610 10 +  18854210 gaaagttcca
i otoGar3.GL873550         I 430 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            20871 691 +     53444 I
e proCoq1.NW_012149775v1     158350 1835 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           269247  0 +    515838 C
e aotNan1.NW_018496901v1      74119 15 -    486031 I
e cebCap1.NW_016107755v1     898589 27 -   1771730 I
e calJac3.chr4             30457658  0 + 171630274 C
e manLeu1.NW_012107142v1     338878 500 -    735854 M

a score=101011.000000
s hg38.chr6_GL000254v2_alt  1479346 14 +   4827813 accctctaatcaca
s panTro5.chr6             30348772 14 + 175400573 accgtctaatcaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30583117 14 + 173848474 accgtctaatcaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     290184 14 +   2037526 cccctctaatcaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74957183 14 + 122973662 accctctaatcaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30835211 14 + 172585720 accctctaatcaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30124696 14 - 170955103 accctctaatcaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     373614 14 +   1495729 accctctaatcaca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     475688 14 -    863181 accctctaatcaca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29625352 14 -  71996105 accctctaatcaca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     262974 14 -   1829203 accctctaatcaca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30457658 14 + 171630274 acactataatcgcg
i calJac3.chr4             C 0 I 4
s saiBol1.JH378341           269247 14 +    515838 accctctaatcgca
i saiBol1.JH378341         C 0 I 4
s otoGar3.GL873550           307620 14 +  18854210 accctctaatcata
i otoGar3.GL873550         C 0 I 4
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            20871 691 +     53444 I
e proCoq1.NW_012149775v1     158350 1835 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e aotNan1.NW_018496901v1      74119 15 -    486031 I
e cebCap1.NW_016107755v1     898589 27 -   1771730 I
e manLeu1.NW_012107142v1     338878 500 -    735854 M

a score=98984.000000
s hg38.chr6_GL000254v2_alt  1479360 12 +   4827813 tggttcttctgc
s panTro5.chr6             30348786 12 + 175400573 tggttcttctgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30583131 12 + 173848474 tggttcttctgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     290198 12 +   2037526 tggttcttctgc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74957197 12 + 122973662 tggttcttctgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30835225 12 + 172585720 tggttcttctgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30124710 12 - 170955103 tggttcttctgc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     373628 12 +   1495729 tggttcttctgc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     475702 12 -    863181 tggttcttctgc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29625366 12 -  71996105 cggttcttctgc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     262988 12 -   1829203 tggttcttctgc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30457676 12 + 171630274 tggtttttctgg
i calJac3.chr4             I 4 C 0
s saiBol1.JH378341           269265 12 +    515838 tggtttttctga
i saiBol1.JH378341         I 4 C 0
s aotNan1.NW_018496901v1      74134 12 -    486031 tggtttttctga
i aotNan1.NW_018496901v1   I 15 C 0
s otoGar3.GL873550           307638 12 +  18854210 tggttcttcctg
i otoGar3.GL873550         I 4 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            20871 691 +     53444 I
e proCoq1.NW_012149775v1     158350 1835 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e cebCap1.NW_016107755v1     898589 27 -   1771730 I
e manLeu1.NW_012107142v1     338878 500 -    735854 M

a score=2838153.000000
s hg38.chr6_GL000254v2_alt  1479372 317 +   4827813 caaccagcccccattcttcctccaagagtcacctcattagcataaaCCCTGGTATGGTTGAAAAGGGCTTATTATGAATAAT-AAAAGATACACTCATCAGAACATAACCATGTGGTAAGTTGAGGTGCAT---------CAGgaattaagatgattcaacttaaaatttttgactttatgatgggtttactggggtatt-gagtacactttcaccttacaatatttctgacttcagtgaattcactgggacgtaaccccatcataagttaaggatcatcttttcaaggg-ttttaggagctctgtgccaagacta-attatatata-----------ta----------------------------------t-------
s panTro5.chr6             30348798 317 + 175400573 caaccagcccccattcttcctccaagagtcacctcattagcataaaCCCTGGTATGGTTGAAAAGGGCTTATTATGAATAAT-AAAAGATACACTCATCAGAACATAACCATGTGGTAAGTTGAGGTGCAT---------CTGgaattaaaatgattcaacttaaaatttttgactttatgatgggtttactggggtatt-gagtacgctttcaccttgcaatatttctgacttcagtgaattcactgggacgtaaccccatcataagttaaggatcatctgTTcaaggg-ttttaggagctctgtgccaagacta-attgtataca-----------ta----------------------------------t-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30583143 317 + 173848474 caaccagcccccattcttcctccaagagtcacctcattagcataaaCCCTGGTATGGTTGAAAAGGGCTTATTATGAATAAT-AAAAGATACACTCATCAGAACATAACCATGTGGTAAGTTGAGGTGCAT---------CTGgaattaagatgattcaacttaaaatttttgactttatgatgggtttactggggtatt-gagtacgctttcaccttgcaatatttctgacttcagtgaattcactgggacgtaaccccatcataagttaaggatcatctgTTcaaggg-ttttaggagctctgtgccaagacta-attgtataca-----------ta----------------------------------t-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     290210 318 +   2037526 caaccagccccccttcttcctccaagagtcacctcattagcataaaCCCTGGTATGGTTGAAAAGGGCTTATTATGAATAAT-AAAAGATACACTCATCAGAACATAACCATGTGGTAAGTTGAGGTGCAT---------CTGgaattaagatgattcaacttaaaatttttgactttatgatgggtttactggggtatt-gagtacactttcaccttacaatatttctgacttcagtgaattcactgggacataaccccatcataagttaaggatcatctgTTcaaggg-ttttaggagctctgcgccaagaCTA-ATTATATACA----------TTA----------------------------------T-------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74957209 352 + 122973662 caaccagcctccattcttcctccaagagtcacctcattagcataaaCCCTGGTATGGTTGAAAAGGGCTTATTATGAATAAT-AAAAGATACACCCATCAGAACATAACTGTGCGGTAAGTTGAGGTGCAT---------CTGgaattaagatgattcaacttaaaatttttgactttatgatgggtttagtggggtatt-gagtacactttcaccttacaatatttctgacttcagtgaattcactgggacgtaaccccatcataagttaaggatcatctgTTCAAGGGTTTTTCGGAGCTCTGTGCCAAGACTA-ATTTtatata-----------tatacatatatatatatatatgtatatgtatatatCT-------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30835237 324 + 172585720 caaccagctcccattcttcctccaagagt--cctcaTTAGCATAAACTCTGGTATGGTTGAAAAGGACTTATTATGAATAAT-AAAAGATACATTCATTGGAACATAACTGTGTGGTAAGTTGAGGTGCATCTAATTCTAATGgaattaggataattcaacttaaaatttttgactttacaatgggtttactggggtatt-gaatacactttcaccttgcaatatttctgacttcagtgaattcattgggacgtaaccccatcataagttaagggtcacctgTTcaatgg-ttttaggagctctgtgccaagaCTA-ATTTtatata-----------ta----------------------------------t-------
i rheMac8.chr4             C 0 I 31
s macFas5.chr4             30124722 324 - 170955103 cagccagctcccattcttcctccaagagt--cctcaCTAGCATAAACTCTGGTATGGTTGAAAAGGACTTATTATGAATAAT-AAAAGATACATTCATTGGAACATAACTGTGTGGTAAGTTGAGGTGCATCTAATTCTAATGgaattaggataattcaacttaaaatttttgactttacaatgggtttactggggtatt-gaatacactttcaccttgcaatatttctgacttcagtgaattcattgggacgtaaccccatcataagttaagggtcacctgTTCAATGG-TTTTAGGAGCTCTGTGCCAAGACTA-ATTTtatata-----------ta----------------------------------t-------
i macFas5.chr4             C 0 I 31
s macNem1.NW_012012100v1     373640 324 +   1495729 caaccagctcccattcttcctccaagagt--cctcaTTAGCATAAACTCTGGTATGGTTGAAAAGGACTTATTATGAATAAT-AAAAGATACATTCATTGGAACATAACTGTGTGGTAAGTTGAGGTGCATCTAATTCTAATGgaattaggatgattcaacttaaaatttttgactttacaatgggtttactggggtatt-gaatacactttcaccttgcaatatttctgacttcagtgaattcattgggacgtaaccccatcataagttaagggtcacctgTTCAATGG-TTTTAGGAGCTCTGTGCCAAGACTA-ATTATATATA-----------Ta----------------------------------c-------
i macNem1.NW_012012100v1   C 0 I 55
s cerAty1.NW_012002535v1     475714 313 -    863181 caaccagcccccattcttcctccaagagt--cctcaTTAGCATAAACTCTGGTATGGTTGAAAAGGACTTATTATGAATAAT-AAAAGATACATTCATTGGAACATAACTGTGTGGTAAGTTGAGGTGCAT---------ATGgaattaggatgattcaacttaaaatttttgac--tacaatgggtttactggggtatt-gaatacactttcaccttgcaatatttctgacttcagtgaattcattgggacgtaaccccatcataagttaaggatcacctgTTcaatgg-ttttaggagctctgtgccaagaCTA-ATTTtatata-----------ta----------------------------------t-------
i cerAty1.NW_012002535v1   C 0 I 3
s chlSab2.chr17            29625378 315 -  71996105 caaccagcccccattcttcctccaagagt--cctcaTTAGCATAAACTCTGGTATGGTTGAAAAGGACTTATTATGAATAAT-AAAAGATACATTCATTGGAACATAACTGTGTGGTAAGTTGAGGTGCAT---------ATGgaattaggatgattcaacttaaaatatttgactttacaatgggtttactggggtatt-gaatacactttcaccttgcaatatttctgacttcagtgaattcattgggacgtaaccccatcataagttaaggatcacctgTTCAATGG-TTTTAGGAGCTCTGTGCCAAGACTA-ATTTtatata-----------ta----------------------------------t-------
i chlSab2.chr17            C 0 I 37
s colAng1.NW_012115577v1     263000 309 -   1829203 caaccagcccccattcttcctccaagagt--cctcaTTAGCATAAATTCTGGTATTATTGAAAAGGACTTATTATGAATAAT-AAAAGATACATTCATTGGGACATAACTGTGTGGTAAGTTGAGGTGCAT---------ATGGAATTAGGATGATTCAACTTAAAATTTTTGACTTTACAATGA------Tggggtatt-gagtacactttcaccttgcaatatttctgacttcagtgaattcattgggatgtaaccccatcataagttaaggatcacctgTTcaaggg-ttttaggagctctgtgccaagaCTA-ATTTtatata-----------ta----------------------------------t-------
i colAng1.NW_012115577v1   C 0 I 3
s calJac3.chr4             30457688 318 + 171630274 caaccagcccctattcttcctccaagaatcacctcatgagcataaaCTTGGGTATGGTTGAAAGGAGCttattataaataataaaaaaataGGTTCGTTGGAATGTAACTGTGTGGTAAGTTGAGCTGTAT---------CTGgatttaggatgattcaacttaaagtgcttgactttacaatgggtttactggggtatt-gagtacactttcaacttgcaatatttctgacttcagtgaattcattgggacgtgaccccatcataagttaaggagcatctgTTcaagga-ttttaggagctctgtgccaagacta-attgtatcta-----------tt----------------------------------t-------
i calJac3.chr4             C 0 I 6
s saiBol1.JH378341           269277 328 +    515838 caaccagcccccattcttcttcaaagagtcacctcatgagcataaaCTCAGGTATGGTTGAAAGGGGCTTATTGTAAATAAT-AAAAGATAGGTTCATCGGAATGTAACTGTGTGGTAAGTTGAGCTGTAT---------CTGgatttagtatgattcaacttaaagttcttgactttacaatgggtttactggggtatt-gagtacactttcaacttgcaatatttctgacttcagtgaattcattgggatgtgaccccatcataagttaaggagcatctgTTcaaggg-ttttaggagctctgtgccaagaCTA-ATTGTATCTATTATTTTTTTTTT----------------------------------T-------
i saiBol1.JH378341         C 0 I 6
s cebCap1.NW_016107755v1     898616 317 -   1771730 caaccagcccccattcttcctccaagagtcacctcatgagcataaaCTCGGGTATGGTTGAAAGGGGCTTATTATAAGTAAT-AAAAGATAGGTTCATTGGAATGTAACTGTGTGGTAAGTTGAGCTGCAT---------CTGgatttaggatgattaaacttaaagttcttgactttacaatgggtttactggggtatt-gagtacactttcaacttgcaatatttctgacttcagtgaattcattgggacgtgaccccatcataagttaaggagcatctgTTcaaggg-ttttaggagctctgtgccaagacta-attgtatcta-----------tt----------------------------------t-------
i cebCap1.NW_016107755v1   I 27 I 6
s aotNan1.NW_018496901v1      74146 318 -    486031 caaccagcccccattcttcctccaagggtcacctcaggagcataaaCTCAAGTATGGTTGAAAGGGGCTTATTATAAATAAT-AAAAgataggttcatcggaatgtaactgcgtggtaagttgagctgcat---------ctgGATTTAGGATGATTCAACTTAAAGTTTTTTACTTTACAATGGGTTTACTggggtattggagtacactttcaacttgcaatatttctgacttcagtgaattcattgggacgtgaccccatcataagttaaggagcatctgTTcaaggg-ttttaggagttctgtgccaagacta-attatatcta-----------tt----------------------------------t-------
i aotNan1.NW_018496901v1   C 0 I 6
s otoGar3.GL873550           307650 312 +  18854210 caaccagcttcca----tcctccaagagtcacctcat-------AACTCAGGTATGTTTGAAAGGGGCTTAGTATAAATAAT---AAGATACATTTGTCTGAACATAATCCCATTATAAATTGTGGGGCAT---------ACAGACTTAGGATGGCTGGATTTTTAATTTTTGACTTTGTGATGGGTTTATTggggtact-aagtgcatgttcaacttacaatattttttactttgatgggtttattgggatgtaacctcatcataagtgaaggaatgtctgTTCAGTGG-TTTCAGAAACTGAGGACCAAATATACAGTGTATATT-----------TT----------------------------------TAAATTAT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            20871 691 +     53444 I
e proCoq1.NW_012149775v1     158350 1835 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e manLeu1.NW_012107142v1     338878 500 -    735854 M

a score=29415.000000
s hg38.chr6_GL000254v2_alt  1479689 6 +   4827813 ctcaca
s panTro5.chr6             30349115 6 + 175400573 ctcaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30583460 6 + 173848474 ctcaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     290528 6 +   2037526 CTCACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74957561 6 + 122973662 CTCACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30835592 6 + 172585720 cacaca
i rheMac8.chr4             I 31 I 14
s macFas5.chr4             30125077 6 - 170955103 cacaca
i macFas5.chr4             I 31 I 14
s cerAty1.NW_012002535v1     476030 6 -    863181 cgcaca
i cerAty1.NW_012002535v1   I 3 I 18
s chlSab2.chr17            29625730 6 -  71996105 cacaca
i chlSab2.chr17            I 37 I 14
s colAng1.NW_012115577v1     263312 6 -   1829203 catata
i colAng1.NW_012115577v1   I 3 I 17
s calJac3.chr4             30458012 6 + 171630274 attaca
i calJac3.chr4             I 6 C 0
s saiBol1.JH378341           269611 6 +    515838 ATTGCA
i saiBol1.JH378341         I 6 C 0
s cebCap1.NW_016107755v1     898939 6 -   1771730 cttaca
i cebCap1.NW_016107755v1   I 6 C 0
s aotNan1.NW_018496901v1      74470 6 -    486031 attaca
i aotNan1.NW_018496901v1   I 6 C 0
s otoGar3.GL873550           307962 6 +  18854210 ATCACA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            20871 691 +     53444 I
e proCoq1.NW_012149775v1     158350 1835 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e manLeu1.NW_012107142v1     338878 500 -    735854 M
e macNem1.NW_012012100v1     373964 55 +   1495729 I

a score=974.000000
s hg38.chr6_GL000254v2_alt  1479695 2 +   4827813 ag
s panTro5.chr6             30349121 2 + 175400573 at
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30583466 2 + 173848474 at
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     290534 2 +   2037526 AG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74957567 2 + 122973662 AT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30835612 2 + 172585720 aa
i rheMac8.chr4             I 14 C 0
s macFas5.chr4             30125097 2 - 170955103 AA
i macFas5.chr4             I 14 C 0
s macNem1.NW_012012100v1     374019 2 +   1495729 AA
i macNem1.NW_012012100v1   I 55 C 0
s cerAty1.NW_012002535v1     476054 2 -    863181 AA
i cerAty1.NW_012002535v1   I 18 C 0
s chlSab2.chr17            29625750 2 -  71996105 AA
i chlSab2.chr17            I 14 C 0
s colAng1.NW_012115577v1     263335 1 -   1829203 a-
i colAng1.NW_012115577v1   I 17 C 0
s calJac3.chr4             30458018 2 + 171630274 at
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           269617 2 +    515838 AT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     898945 2 -   1771730 at
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      74476 2 -    486031 at
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           307968 2 +  18854210 AT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            20871 691 +     53444 I
e proCoq1.NW_012149775v1     158350 1835 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e manLeu1.NW_012107142v1     338878 500 -    735854 M

a score=109056.000000
s hg38.chr6_GL000254v2_alt  1479697 9 +   4827813 atcacaCAG
s panTro5.chr6             30349123 9 + 175400573 atcacaCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30583468 9 + 173848474 atcacaCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     290536 9 +   2037526 ATCACACAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74957569 9 + 122973662 ATCACACAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30835614 9 + 172585720 atcacacaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30125099 9 - 170955103 ATCACACAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     374021 9 +   1495729 ATCACACAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     476056 9 -    863181 ATCACACAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29625752 9 -  71996105 ATCACACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     339397 9 -    735854 ATCACACAA
i manLeu1.NW_012107142v1   M 500 C 0
s colAng1.NW_012115577v1     263336 9 -   1829203 ATCACACAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30458020 9 + 171630274 attacaCAA
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           269619 9 +    515838 ATCACGCAA
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     898947 9 -   1771730 atcacaCAA
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496901v1      74478 9 -    486031 atcacaCAA
i aotNan1.NW_018496901v1   C 0 I 1
s otoGar3.GL873550           307970 9 +  18854210 ATCACACAA
i otoGar3.GL873550         C 0 I 1
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            20871 691 +     53444 I
e proCoq1.NW_012149775v1     158350 1835 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=55522.000000
s hg38.chr6_GL000254v2_alt  1479706 4 +   4827813 CCCA
s panTro5.chr6             30349132 4 + 175400573 CCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30583477 4 + 173848474 CCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     290545 4 +   2037526 CCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74957578 4 + 122973662 CCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30835623 4 + 172585720 ccca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30125108 4 - 170955103 CCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     374030 4 +   1495729 CCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     476065 4 -    863181 CCCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29625761 4 -  71996105 CCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     339406 4 -    735854 CCCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     263345 4 -   1829203 CCCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30458030 4 + 171630274 CCCA
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           269629 4 +    515838 CCCA
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     898957 4 -   1771730 CCCA
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496901v1      74488 4 -    486031 CCCA
i aotNan1.NW_018496901v1   I 1 C 0
s proCoq1.NW_012149775v1     160185 4 -   1411461 CCCA
i proCoq1.NW_012149775v1   I 1835 C 0
s otoGar3.GL873550           307980 4 +  18854210 CCTG
i otoGar3.GL873550         I 1 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e dasNov3.JH567297            20871 691 +     53444 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=1219708.000000
s hg38.chr6_GL000254v2_alt  1479710 95 +   4827813 CAGCAAACAGTGGCAAAGTGGGATTGAGGGAGGAGGCTCTGAAATGAGG-TTTTCAACAAGCGTCTTGGACCCTTAGAAGTTTCAAGTGACAGCCC
s panTro5.chr6             30349136 94 + 175400573 CAGCAAACAGTGGCAAAGTGGGATTGAGGGAGGAGGCTCTGAAATGAGG--TTTCAACAAGCGTCTTGGACCCTTAAAAGTTTCAAGTGACAGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30583481 95 + 173848474 CAGCAAACAGTGGCAAAGTGGGATTGAGGGAGGAGGCTCTGAAATGAGG-TTTTCAACAAGCGTCTTGGACCCTTAAAAGTTTCAAGTGACAGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     290549 95 +   2037526 CAGCAAACAGTGGCAAAGTGGGATTGAGAGAGGAGGCTCTGAAATGAGG-TTTTCAACAAGGGTCTTGGACTCTTAAAAGTTTCAAGTGACAGCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74957582 91 + 122973662 CAG----CAGTGGCAAAGTGAGATTGAGGGAGGAGGCTCTGAAACAAGG-TTTTCAACAAGCATCTTGGACCCTTAAAAGTTTCAAGTGACAGCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30835627 95 + 172585720 cagcaaacaGTGGCAAAGTGGGATTGAGGGAGGAGGCTCTGAAATGAGG-TTTTCCACAAGCATCTTGAACCCTTAAAAGTTTCAAGTGACAGCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30125112 95 - 170955103 CAGCAAACAGTGGCAAAGTGGGATTGAGGGAGGAGGCTCTGAAATGAGG-TTTTCCACAAGCATCTTGAACCCTTAAAAGTTTCAAGTGACAGCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     374034 95 +   1495729 CAGCAAACAGTGGCAAAGTGGGATTGAGGGAGGAGGCTCTGAAATGAGG-TTTTCCACAAGCATCTTGAACCCTTAAAAGTTTCAAGTGACAGCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     476069 95 -    863181 CAGCAAACAGTGGCAAAGTGGGATTGAGGGAGGAGGCTCTGAAATGAGG-TTTTCCACAAGCATCTTGAACCCTTAAAAGTTTCAAGTGACAGCCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29625765 95 -  71996105 CAGCAAACAGTGGCAAAGTGGGATTGAGGGAGGAGGCTCTGAAATGAGG-TTTTCCACAAGCATCTTGAACCCTTAAAAGTTTCAAGTGACAGCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     339410 95 -    735854 CAGCAAACAGTGGCAAAGTGGGATTGAGGGAGGAGGCTCTGAAATGAGG-TTTTCCACAAGCATCTTGAACCCTTAAAAGTTTCAAGTGACAGCCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     263349 95 -   1829203 CAACAAACAGTGGCAAAGTGGGATTGAGGGAGGAGGCTCTGAAATGATG-TTTTCCACAAGCATCTTGAACCCTTAAAAGTTTCAAGTGACAGCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30458034 94 + 171630274 CAGC-AACAGTAGCAAAGTGGGATTGAGGGAGGAGGCTAAGAAATGAGG-TTTTTGACAAGCTTCTTGGACCCTTAAAAGTTTGAAGTGACAGCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           269633 95 +    515838 CAGCAAACAGTGAGAAAGTGGGATTGAGGGAGGAGGCTATGAAATGAGG-TTTTCAACAAGCTTCTTGGACCCTTAAAAGTTTGAAGTGACAGCCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     898961 95 -   1771730 CAGCAAACAGTGGCAAAGTGGGATTGAGGGAGGAGGCTATGAAATGAGG-TTTTCGACAAGCTTCAAGGACCCTTAAAAGTTTGAAGTGATAGCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      74492 95 -    486031 CAGCAAACGGTGGCAAAGTGGGATTGAGGGAGGAGGCTGTGAAATGAGG-TTTTCGACAAGTTTCTTGGATCCTTAAAAGTTTGAAGTGACAGCCC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     160189 96 -   1411461 CAGCAAACAGTGGCAAAGTGGGACTGAGGGAGGGGGCTATGGGGTGAGATTTTTCAACAAGAATCTTGGACCCTTAAAAGCCTCAAGTGGTAGCCC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           307984 92 +  18854210 CAGCAAACAGTGGTGAAGTGAGATTGAAGTAGGAGGCTATGGAGTGAGG-TTTTCAACAAGAATCTTGA---CCAGGCATCCTCAAACTACAGCCC
i otoGar3.GL873550         C 0 I 774
s dasNov3.JH567297            21562 95 +     53444 CGGGAGGCAGTGGTAAAGTGGGATTGAGGAAGGAAGTTATGGGGTAAAA-TTTTCAACAAGAGACTCAGACCTTCTAAAGCTTCAGGTGGTAGCCC
i dasNov3.JH567297         I 691 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=141828.000000
s hg38.chr6_GL000254v2_alt  1479805 14 +   4827813 TTATTAGTGGCACC
s panTro5.chr6             30349230 14 + 175400573 TTATTAGTGGCACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30583576 14 + 173848474 TTATTAGTGGCACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     290644 14 +   2037526 TTATTAGTGGCACC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74957673 14 + 122973662 TTATTAGTGGCACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30835722 14 + 172585720 TTGTTAGTGGCACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30125207 14 - 170955103 TTGTTACTGGCACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     374129 14 +   1495729 TTGTTACTGGCACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     476164 14 -    863181 TTGTTAGTGGCACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29625860 14 -  71996105 TTGTTAGTGGCACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     339505 14 -    735854 TTGTTAGTGGCACC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     263444 14 -   1829203 TTGTTAGTGGCGCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30458128 14 + 171630274 TTATCAGTGGCACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           269728 14 +    515838 TTATCAGTGGCACC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     899056 14 -   1771730 TTATCAGTGGCACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      74587 14 -    486031 TTATCAGTGGCGCC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     160285 14 -   1411461 CAGTTAGTGCCCCA
i proCoq1.NW_012149775v1   C 0 I 1
s dasNov3.JH567297            21657 14 +     53444 TCACTCATTGTATC
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           308076 774 +  18854210 I

a score=636194.000000
s hg38.chr6_GL000254v2_alt  1479819 57 +   4827813 CCTTAGGGGCTCCCTCAAACTCAATGCCAAGACTAGCCTGACTGGAGGGAACTTAGA
s panTro5.chr6             30349244 57 + 175400573 CCTTGGGGGCTCCCTCAAACTCAATGCCAAGACTAGCCTGACTGGAGGGAACTTAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30583590 57 + 173848474 CCTTGGGGGCTCCCTCAAACTCAATGCCAAGACTAGCCTGACTGGAGGGAACTTAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     290658 57 +   2037526 CCTTGGGGGCTCCCTCAAACTCAATGCCAAGACTAGCCTGACTGGAGGGAACTTAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74957687 57 + 122973662 CCTTGGGGGCTCCCTCAAACTCAATGCCAAGACTAGCCTGACTGGAGGGAACTTAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30835736 57 + 172585720 CCTTGGGGACTCCCTCAAACTCAATGCCAAGGCTAGCCTGACTGGAGGGAACTTAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30125221 57 - 170955103 CCTTGGGGACTCCCTCAAACTCAATGCCAAGACTAGCCTGACTGGAGGGAACTTAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     374143 57 +   1495729 CCTTGGGGACTCCCTCAAACTCAATGCCAAGACTAGCCTGACTGGAGGGAACTTAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     476178 57 -    863181 CCTTGGGGACTCCCTCAAACTCAATGCCAAGACTAGCCTGACTGGAGGGAACTTAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29625874 57 -  71996105 CCTTGGGGACTCCCTCAAACTCAATGCCAAGACTAGCCTGACTGGAGGGAACTTAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     339519 57 -    735854 CCTTGGGGACTCCCTCAAACTCAATGCCAAGACTAGCCTGACTGGAGGGAACTTAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     263458 57 -   1829203 CCTTGGGGGCTCCCTCAAACTCAATGCCAAGACTAGCCTGACTGGAGGGAACTTAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30458142 54 + 171630274 CCTTGGGGGATCCCCCAAACTTAATGCC---TCCTGACATTAAGGAGGGAACTTAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           269742 54 +    515838 CCTTGGGGGATCCCCCAAACTCTATGCC---TCCAGCCTGACTGGAGGGAATGTAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     899070 54 -   1771730 CCTTGGGGGATCCCCCAAACTCTATGCC---TCCAGCCTGACTGGAGGGAACTTAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      74601 54 -    486031 CCTTGGGGGATCCCCCAAACTCTATGCC---TCCAGCCTGACTGGAGGGAACTTAGA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     160300 57 -   1411461 CCCCGTGAGCTCACCAAAAGTCAATGCCAAGACCCGCCTGACTGGAGGGAAGTTGGA
i proCoq1.NW_012149775v1   I 1 I 111
s otoGar3.GL873550           308850 57 +  18854210 CCCTGTGAGCTCAGCCAAAGTCAATGCCAAGACCAGTCTAAATGGAGGGAAATTGGA
i otoGar3.GL873550         I 774 I 3
s dasNov3.JH567297            21671 36 +     53444 CTTTGCGGGCTCCCCCA------GTGCCGG--------TGACTGGGGAGG-------
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=449701.000000
s hg38.chr6_GL000254v2_alt  1479876 38 +   4827813 CAATGGGGTGGGCATTTGATGTTCCAG---CATCTTGAGTG
s panTro5.chr6             30349301 38 + 175400573 CAATGGGGTGGGCAGTTGATGTTCCAG---CATCTTGAGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30583647 38 + 173848474 CAATGGGGTGGGCAGTTGATGTTCCAG---CATCTTGAGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     290715 38 +   2037526 CAATGGGGTGGGCAGTTGATGTTCCAG---CATCTTGAGTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74957744 38 + 122973662 CAATGGGGTGGGCAGTTGATATTCCAG---CATCTTGAGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30835793 41 + 172585720 CAATGGGGTGGGCAGTTGATGTTCCAGCTCCATCTTGAGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30125278 38 - 170955103 CAATGGGGTGGGCAGTTGATGTTCCAG---CATCTTGAGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     374200 38 +   1495729 CAATGGGGTGGGCAGTTGATGTTCCAG---CATCTTGAGTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     476235 38 -    863181 CAATGGGGTGGGCAGTTGATGTTCCAG---CATCTTGAGTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29625931 38 -  71996105 CAATGGGGTGGGCAGTTAATGTTCCAG---CATCTTGAGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     339576 38 -    735854 CAATGGGGTGGGCAGTTGATGTTCCAG---CATCTTGAGTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     263515 38 -   1829203 CAATGGGGTGGGCAGTTGATGTTCCAG---CATCTTGAGTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30458196 38 + 171630274 CATTCGGGTGGGCAGTTGATGTTCCAG---CAACTTGAGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           269796 38 +    515838 CAATGGGGTGGGCAGTTGATGTTCCAG---CATCTTGAGTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     899124 38 -   1771730 CAATCGGGTGGACAGTTGATGTTCAAG---CATCTTGAGTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      74655 38 -    486031 CAGTCGGGTGGGCAGTTGATGTTCCAG---CAACTTGAGTG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           308910 38 +  18854210 CAGTGAGGGGGGCAGCTGAAGTTCCAG---CATCATGAATA
i otoGar3.GL873550         I 3 C 0
s dasNov3.JH567297            21707 33 +     53444 -AGTGTGGTGGG----TGGTGTTCTCG---CGTCACGAGTC
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58094919 1994 -  94987271 I
e proCoq1.NW_012149775v1     160357 111 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=266089.000000
s hg38.chr6_GL000254v2_alt  1479914 21 +   4827813 GGTGCCATTATTCTGTGACAC
s panTro5.chr6             30349339 21 + 175400573 GGTGCCATTGTTCTGTGACAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30583685 21 + 173848474 GGTGCCATTGTTCTGTGACAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     290753 21 +   2037526 GGTGCCATTGTTCTGTGACAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74957782 21 + 122973662 GGTGCCATTGTTCTGTGACAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30835834 21 + 172585720 GGTGCCATTGTTCTGTGACAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30125316 21 - 170955103 GGTGCCATTGTTCTGTGACAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     374238 21 +   1495729 GGTGCCATTGTTCTGTGACAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     476273 21 -    863181 GGTGCCATTGTTCTGTGACAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29625969 21 -  71996105 AGTGCCATTGTTCTGTGACAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     339614 21 -    735854 GGTGCCATTGTTCTGTGACAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     263553 21 -   1829203 GGTGCCATTGTTCTGTGACTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30458234 21 + 171630274 GGTGCCATGGTTCCGTGACAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           269834 21 +    515838 GGTGCCATGATTCTGTGACAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     899162 21 -   1771730 GGTGCCATGGTTCTGTGACAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      74693 21 -    486031 GGTGCCATGGTTCTGTGACAC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           308948 21 +  18854210 GGTGTTACAGTTCTGTGATGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58096913 21 -  94987271 GGTGTCACGGTCATGTGACAC
i mm10.chr17               I 1994 I 2
s dasNov3.JH567297            21740 21 +     53444 AGTGCCCTGGCTCTGACTCTC
i dasNov3.JH567297         C 0 I 877
e micMur3.chr6               333795 29247 + 123392446 I
e proCoq1.NW_012149775v1     160357 111 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=584548.000000
s hg38.chr6_GL000254v2_alt  1479935 47 +   4827813 CTGGATCCTGGGGTTCCATAAGC-TGGGGTTCTAGGATGTCCATTCTT
s panTro5.chr6             30349360 47 + 175400573 CTGGATCCTGGGGTTCCACAAGC-TGGGGTTCTAGGATGTCCATTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30583706 47 + 173848474 CTGGATCCTGGGGTTCCACAAGC-TGGGGTTCTAGGATGTCCATTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     290774 47 +   2037526 CTGGATCCTGGGGTTCCATAAGC-TGGGGTTCTAGGATGTCCATTCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74957803 47 + 122973662 CTGGATCCTGGGGTTCCATAAGC-TGGGGTTCTAGGATGTCCATTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30835855 47 + 172585720 CTGGATCCTGGGGTTCCATAAAC-TGGGGTTCTAGGATGTCCATTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30125337 47 - 170955103 CTGGATCCTGGGGTTCCATAAGC-TGGGGTTCTAGGATGTCCATTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     374259 47 +   1495729 CTGGATCCTGGGGTTCCATAAGC-TGGGGTTCTAGGATGTCCATTCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     476294 47 -    863181 CTGGATCCTGGGGTTCCATAAGC-TGGGGTTCTAGGATGTCCATTCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29625990 47 -  71996105 CTGGATCCTGGGGTTTCATAAGC-TGGGGTTCTAGGATGTCCATTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     339635 47 -    735854 CTGGATCCTGGGGTTCCATAAGC-TGGGGTTCTAGGATGTCCATTCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     263574 46 -   1829203 CTGGATCCTGGGGTTCCAT-AGC-TAGGGTTCTAGGATGTCCATTCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30458255 47 + 171630274 CTGGATGCTGAGGTTCCATAAGC-TGTGGTTCTGGGATGTCCATTCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           269855 47 +    515838 CTGGATCCTGAGGTTCCATAAGC-TGGGGTTCTGGGATGTCCATTCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     899183 47 -   1771730 CTGGATCCTGAGGTTCCATAAGC-TGGGGTTCTGGGATGTCCATTCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      74714 47 -    486031 CTGGATCCTGAAGTTCCATAAGC-TGGGATTCTGGGATGTCCATTCTC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           308969 47 +  18854210 CTGGATCACAATGTTCCCTAAGC-TGGGGTTCTAGGGTCCCCATTCCA
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               58096936 47 -  94987271 CTAGAATTTGTGGTTCCACATGTGTGAGGTTCTTGGG-GCTCATTCTC
i mm10.chr17               I 2 C 0
s dasNov3.JH567297            22638 47 +     53444 CTGTATCCTGAGGTTGGGCAAGC-TGGCGTGCCAGGGGTTTCCTTCTG
i dasNov3.JH567297         I 877 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e proCoq1.NW_012149775v1     160357 111 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=7001094.000000
s hg38.chr6_GL000254v2_alt  1479982 552 +   4827813 AGTTGAGT---------CTCATTTCCTGTCATATCGACGTCAAAGGC-CCAAGACCTTCCTCCTCCCCTTGAGCAAACAAGCCATGCCCTGCAC----CAAAGTCCATCTCACCTTCCAG----------CTACCCTAGG-TAAT------------T-----TTCCTGGTAATTCAGTGTTTCTAGGAAAGCATGAGTCTTTCCACCCCCTGC-CCTGAGATTTACTGACATATGA------ACACATATGATTGGCATGATAT---AAGAA----CCACTCGTctgctggcca--tctctccaggtctggagccagagaagatgatctgaaattgtagcaggagaaattgaggtaggatactaagaaagC--TTTTCAGGAGT-GGGGCTAGGCAAGAGGTGC-AGCATGAGGGAATAAGAGTGAATCCTCAGTATCTAAGGGA---GGTGGCAGGT-GGCG-GGGGACTTCTTTCTTTGGGTCATCTTTGGTGGTGATTTGACAGGAAGGAACAAAGTGGCTTCAAACATTATACAAGTCTCTAG-------------------------------------------TCTGTTCTGTGTCCTGTTTTCTTTCTC--ATTCTTTCAGTGTGGAATCTATATGACCCTGGGAGGGATGTTGG
s panTro5.chr6             30349407 552 + 175400573 AGTTGAGT---------CTCATTTCCTGTCATATCGACGTCAAAGGC-CCAAGACCTTCCTCCTCCCCTTGAGCAAACAAGCCACGCCCTGCAC----CAAAGTCCATCTCACCTTCCAG----------CTACCCTAGG-TAAT------------T-----TTCCTGGTAATTCAGTGTTTCTAGGAAAGCATGAGTCTTTCCACCCCCCGC-CCTGAGATTTACTGACATATGA------ACACATATGATTGGCATGATAT---AAGAA----CCACTcatctgctggcca--tctctccaggtctggagccagagaaaatgatctgaaattgtagcaggagaaattgaggtaggatactaagaaagC--TTTTCAGGAGT-GGGGCTAGGCAAGAGGTGC-AGCATGAGAGAATAAGAGTGAATCCTCAGCATCTAAGGGA---GGTGGCAGGT-GGCA-GGGGACTTCCTTCTTTGGGTCATCTTTGGTGGTGATTTGACAGGAAGGAACAAAGTGGCTTCAAACATTATACAAGTCTCTGG-------------------------------------------TCTGTTCTGTGTCCTGTTTTCTTTCTC--ATTCTTTCAGTGTGGAATCTATATGACCCTGGGAGGGATGTTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30583753 552 + 173848474 AGTTGAGT---------CTCATTTCCTGTCATATCGACGTCAAAGGC-CCAAGACCTTCCTCCTCCCCTTGAGCAAACAAGCCACGCCCTGCAC----CAAAGTCCATCTCACCTTCCAG----------CTACCCTAGG-TAAT------------T-----TTCCTGGTAATTCAGTGTTTCTAGGAAAGCACGAGTCTTTCCACCCCCCGC-CCTGAGATTTACTGACATATGA------ACACATATGATTGGCATGATAT---AAGAA----CCACTcatctgctggcca--tctctccaggtctggagccagagaaaatgatctgaaattgtagcaggagaaattgaggtaggatactaagaaagC--TTTTCAGGAGT-GGGGCTAGGCAAGAGGTGC-AGCATGAGAGAATAAGAGTGAATCCTCAGCATCTAAGGGA---GGTGGCAGGT-GGCA-GGGGACTTCCTTCTTTGGGTCATCTTTGGTGGTGATTTGACAGGAAGGAACAAAGTGGCTTCAAACATTATACAAGTCTCTGG-------------------------------------------TCTGTTCTGTGTCCTGTTTTCTTTCTC--ATTCTTTCAGTGTGGAATCTGTATGACCCTGGGAGGGATGTTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     290821 552 +   2037526 AGTTGAGT---------CTCATTTCCTGTCATATCGACGTCAAAGGC-CCAAGACCTTCCTCCTCCCCTTGAGCAAACAAGCCACGCCCTGCAC----CAAAGTCCATCTCACCTTCCAG----------CTACCCTAGG-TAAT------------T-----TTCCTGGTAATTCAGTGTTTCTAGGAAAGCATGAGTCTTTCCACCCCCTGC-CCTGAGATTTACTGACATATGA------ACACATATGATTGGCATGATAT---AAGAA----CCACTcatctgctggcca--tctctccaggtctggagccagagaaaatgatctgaaattgtagcaggagaaattgaggtaggatactaaggaagC--TTTTCAGGAGT-GGGGCTAGGCAAGAGGTGC-AGCATGAGGGAATAAGAGTGAATCCTCAGTATCTAAGGGA---GGTGGCAGTT-GGTG-GGGGACTTCCTTATTTGGGTCATCTTTGGTGGTGATTTGACAGGAAGGAACAAAGTGGCTTCAAACATTATACAAGTCACTGG-------------------------------------------TCTGTTCTGTGTCCTGTTTTCTTTCTC--ATTCTTTCAGTGTGGAATCTATATGTCCCTGGGAGGGATGTTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74957850 550 + 122973662 AGTTGAGT---------CTCATTTCCTGTCATATCGACGTCAAAGGC-CCAAGACCTTCCTCCTCCCCATGAGCAAACAAGCCACGCCCTGCACCAGTCAAAGTCTATCTCACCTTCCAG----------CTACCCTAGG-TAAT------------T-----TTCCTGGTAATTCAGTGTTTCTAGGAAAGTGTGAGTCTTTCCACCCCCCGC-CCTGAGATTT------ATATGA------ACACATATGATTGGCATGATTT---AAGAA----CCACTcacctgctggcca--tctctccaggtctggagccagagaaaatgatctgaaattgtagcagaagaaattgaggtaggatactaagaaagC--TTTTCAGGAGT-CGGGCTAGGCAAGAGGTGC-AGCATGAGAGAATGAGAGTGAATCCTCAGTATCTAAGGGA---AGTGGCAGGT-GGCG-GGGGACTTCTTTCTTTGGGTCATCTTTGGTGGTGATTTGACAGGAAGGAACAAAGTGGCTTCAAACATTTTACAAGTCTCTGG-------------------------------------------TCTGTTCTGTGTCCTGTTTTCTTTCTC--ATTCTTTCAGTGTGGAATCTATATGACCCTGGGAGGGATGTTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30835902 547 + 172585720 AGTTGAGT---------CTCAGTTCCTGTCACATCGACGTCAAAGGC-CCAAGACCTTCCTCCTCCCTGTAAGCAAACAAGCCACGCCCTGCAC----CAAAGTCCGTCTCACCTTCCAG----------CTACCCTAGG-TAAT------------T-----TTCCTGGTAATTCAGTGTTTCTAGGAAAGCGT--GTCTTTCCACCCCCCGC-CCTGAGATTTACTGACATGTGA------ACACGTATGACTGGCACGATTT---AAGAA----CCACTcacctgctggcca--tctctccaggtctgcagccagagaaaatgatctgaaattgtagcaggagaaattgaggtaggatactaagaaagC--TTTTCAGGAGT-GGGTCTAGGCAAGAGGTGC-AGCATGAGGGAATGAGAGTGAATCCCCAGTATCTAAGGGA---AGTGGCAAGT-GGTG-GGGCACTTCCTTCTTTGGGTCATCTTTGGTGGTGATTTGACAGGAAGGAACAAAGTGGCTTCAAAC---ATATAAGTTTCTGG-------------------------------------------TCTGTTCTGTGTCCTGTTTTCTTTCTC--ATTCTTTCAGTGTGGAATCTATATGACCCTGGGAGGGATGCTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30125384 547 - 170955103 AGTTGAGT---------CTCAGTTCCTGTCACATCGACGTCAAAGGC-CCAAGACCTTCCTCCTCCCTGTAAGCAAACAAGCCACGCCCTGCAC----CAAAGTCCATCTCACCTTCCAG----------CTACCCTAGG-TAAT------------T-----TTCCTGGTAATTCAGTGTTTCTAGGAAAGCGT--GTCTTTCCACCCCCCGC-CCTGAGATTTACTGACATGTGA------ACACGTATGACTGGCACGATTT---AAGAA----CCACTCACCTGCTGGCCA--TCTCTCCAGGTCTGCAGCCAGAGAAAATGATCTGAAATTGTAGCAGGAGAAATTGAGGTAGGATACTAAGAAAGC--TTTTCAGGAGT-GGGGCTAGGCAAGAGGTGC-AGCATGAGGGAATGAGAGTGAATCCCCAGTATCTAAGGGA---AGTGGCAAGT-GGTG-GGGGACTTCCTTCTTTGGGTCATCTTTGGTGGTGATTTGACAGGAAGGAACAAAGTGGCTTCAAAC---ATATAAGTTTCTGG-------------------------------------------TCTGTTCTGTGTCCTGTTTTCTTTCTC--ATTCTTTCAGTGTGGAATCTATATGACCCTGGGAGGGATGCTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     374306 547 +   1495729 AGTTGAGT---------CTCAGTTCCTGTCACATCGACGTCAAAGGC-CCAAGACCTTCCTCCTCCCTGTAAGCAAACAAGCCACGCCCTGCAC----CAAAGTCCATCTCACCTTCCAG----------CTACCCTAGG-TAAT------------T-----TTCCTGGTAATTCAGTGTTTCTAGGAAAGCGT--GTCTTTCCACCCCCCGC-CCTGAGATTTACTGACATGTGA------ACACGTATGACTGGCACGATTT---AAGAA----CCACTcacctgctggcca--tctctccaggtctgcagccagagaaaatgatctgaaattgtagcaggagaaattgaggtaggatactaagaaagC--TTTTCAGGAGT-GGGGCTAGGCAAGAGGTGC-AGCATGAGGGAATGAGAGTGAATCCCCAGTATCTAAGGGA---AGTGGCAAGT-GGTG-GGGGACTTCCTTCTTTGGGTCATCTTTGGTGGTGATTTGACAGGAAGGAACAAAGTGGCTTCAAAC---ATATAAGTTTCTGG-------------------------------------------TCTGTTCTGTGTCCTGTTTTCTTTCTC--ATTCTTTCAGTGTGGAATCTATATGACCCTGGGAGGGATGCTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     476341 545 -    863181 AGTTGAGT---------CTCAGTTCCTGTCACATCGACGTCAAAGGC-CCAAGACCTTCCTCCTCCCTGTAAGCAAACAAGCCACGCCCTGCAC----CAAAGTCCATCTCACCTTCCAG----------CTACCCTAGG-TAAT------------T-----TTCCTGGTAATTCAGTGTTTCTAGGAAAGCGT--GTCTTTCCACCCCCCGC-CCTCAGATTTACTGACATGTGA------ACACGTATGACTGGCACGATTT---AAGAA----CCACTcacctgctggcca--tctctccaggtctgcagccagagaaaatgatctgaaattgtagcaggagaaattgaggtaggatactaagaaaga--ttttcAGGAGT-GGGTCTAGGCAAGAGGTGC-AGCATGAGGGAATGAGAGTGAATCCCCAGTATCTAAGGGA---AGTGGCAAGT-GGTG-GGGGACTTCCTTCTTTGGGTCATCTTTGGTGGTGATTTGACAGAAGGGAACAAAGTGGCTTCAAAC---ATAT--GTTTCTGG-------------------------------------------TCTGTTCTGTGTCCTGTTTTCTTTCTC--ATTCTTTCAGTGTGGAATCTATATGACCCTGGGAGAGATGCTGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29626037 547 -  71996105 AGTTGAGT---------CTCAGTTCCTGTCACATCGACGTCAAAGGC-CCAAGACCTTCCTCCTCCCTGTAAGCAAACAAGCCACGCCCTGCAC----CAAAGTCCGTCTCACCTTCCAG----------CTACCCTAGG-TAAT------------T-----TTCCTGGTAATTCAGTGTTTCTAGGAAAGCGT--GTCTTTCCACCCCCCGC-CCTGAGATCTACTGACATGTGA------ACACGTATGACTGGCACGATTT---AAGAA----CCACTCACCTGCTGGCCA--TCTCTCCAGGTCTGCAGCCAGAGAAAATGATCTGAAATTGTAGCAGGAGAAATTGAGGTAGGATACTAAGAAAGA--TTTTCAGGAGT-GGGTCTAGGCAAGAGGTGC-AGCATGAGGGAATGAGAGTGAATCCCCAGTATCTAAGGGA---AGTGGCAAGT-GGTG-GGGGACTTCCTTCTTTGGGTCATCTTTGGTGGTGATTTGACAGGAAGGAACAAAGTGGCTTCAAAC---ATATAAGTTTCTGG-------------------------------------------TCTGTTCTGTGTCCTGTTTTCTTTCTC--ATTCTTTCAGTGTGGAATCTGTATGACCCTGGGAGGGATGCTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     339682 547 -    735854 AGTTGAGT---------CTCAGTTCCTGTCACATCGACGTCAAAGGC-CCAAGACCTTCCTCCTCCCTGTAAGCAAACAAGCCACGCCCTGCAC----CAAAGTCCATCTCACCTTCCAA----------CTACCCTAGG-TAAT------------T-----TTCCTGGTAATTCAGTGTTTCTAGGAAAGCGT--GTCTTTCCACCCCCTGC-CCTCAGATTTACTGACATGTGA------ACACGTATGACTGGCACGATTT---AAGAA----CCACTcacctgctggcca--tctctccaggtctgcagccagagaaaatgatctgaaattgtagcaggagaaattgaggtaggatactaagaaagC--TTTTCAGGAGT-GGGTCTAGGCAAGAGGTGC-AGCATGAGGGAATGAGAGTGAATCCCCAGTATCTAAGGGA---AGTGGCAAGT-GGTG-GGGGACTTCCTTCTTTGGGTCATCTTTGGTGGTGATTTGACAGGAAGGAACAAAGTGGCTTCAAAC---ATATAAGTTTCTGG-------------------------------------------TCTGTTCTGTGTCCTGTTTTCTTTCTC--ATTCTTTCAGTGTGGAATCTATATGACCCTGGGAGGGATGCTGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     263620 554 -   1829203 AGTTGAGT---------CTCAGTTCCTGTCATATCGACGTCAAAGGC-CCAAGACCTTCCTCCTACTTGTGAGCAAACAAGCCACGCCCTGTACCAGTCAAAGTCCATCTCACCTTCCAG----------CTACCCTAGG-TAAT------------G-----TTCCTGGTAATTCAGTGTTTCTAGGAAAGCGT--GTCTTTCCACCTCCCGC-CCTGAGATTTACTGACATGTGA------ACACGTATGACTGGCACGATTT---AAGAA----CCACTTACctgctggcca--tctctccaggtctgcagccagagaaaatgatctgaaattgtagcaggagaaattgaggtaggatactaagaaagC--TTTTCAGGAGT-GGGTCTAGGCAAGAGGTGC-GGCATGAGGGAATGAGAGTGAATCCCCAGTATCTAAGGGA---AATGGCAGGT-GGCG-GGGGACTTCCTTCTTTGGGTCATCTTTGGTGGTGATTTGACAGGAAGGAACAAAGTGGCTTCAAACATTATATAAGTCTCTGA-------------------------------------------TCTGTTCTGTGTCCTGTTTTCTTTCTC--ATTCTTTCAGTGTGGAGTCTATATGACCCTGGGAGGGATGCTGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30458302 549 + 171630274 AGTTGAG----------------TCCTGTCATATCGACGTCAAAGGC-CCAAGACCTTCCTCCTCTCCATGAGCAAACAAGGCACACCCTGCACCAGTCAACGTCCATCTCACCTTCCAG----------CTACCCTAGGTTTAT------------T-----TTCCTAGTAATGCAGTGTTTCTAGGAAAGGGCGAGTCTCTCCACCCC---A-CACGAGATTTACTGACATATGA------ACACATATGATTGGCACGATTT---AAGAA----CCACTCACCTGCTGGCCATCTCTCTCCAGGTCTAGAGCTGGAGAAAATGATCTGAAGTTACAGCAGAAGAAATTGAGGTAGGATACTAAGAAAGC--TTTTCGGGAGG-GGGAGTAGGCAAGAGGTGT-AGCATGAGGGAATGAGAGTGAATGCTCGGTGT-GAAAGGA---AGTGGTGGGT-GGGGTGGAAACTTCCTTCTTTGGGTCATCTTTGGAGGTGATTTGACAGCAAGGAACAAAGTGGCTTCAAACATTACACAAGTCTCTGG-------------------------------------------TCTGTTCTGTGTCCTGTTTTCTTTCTC--ATCCTTTCAGTGTGGAATCTATATGACCCTGGGAAGGATGTTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           269902 546 +    515838 AGTTGAG----------------TCCTGTCATATCGACGTCAAAGGC-CCAAGACCTTCCTCCTCCCCGTAAGCAAACAAGCCACGCCCTGCACCAGTCAACGTCCATCTCACCTTCCAG----------CAATCCTAGG-TCAT------------T-----TTCCTGGCAATGCAGTGTTTCTAGGAAAGAGTGAGTCTCTCCATGCC---A-CCTGAGATTTACTGACATATGA------ACACATATAATTGGCACAATTT---AAGAA----CCACTcacctgctggcca--tctctccaggtctggagccagagaaaatgatctgaagttacagcagaagaaattgaggtaggatactaagaaagC--TTTTCAGGAGG-GGGACTAGGCAAGAGGTGT-AGCATGAGGGAATGAGAGTGAATGCTCGGTGT-GAAAGGA---AGTGGCAGGT-GGGGTGGGGGCTTCCTTCTTTGGGTCATCTTTGGAGGTGATTTGACAGCAAGGAACAAAGTGGCTTCAAACATTCCACAAGTCTCTGG-------------------------------------------TCTGTTCTGTGTCCTGTTTTCTTTCTC--ATCCTTTCAGTGTGGAATCTATATGACCCTGGGAGAGATGTTGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     899230 545 -   1771730 ACTTGAG----------------TCCTGTCATATTGACGTCAAAGGC-CCAAGACCTTCCTCCTCCCCATGAGCAAACAAGCCACACCCTGCACCAGTCAACGTCCATCTCACCTTCCAG----------CAACCCTAGG-TCAT------------T-----TTCCTGGTAATGCAGTGTTTCTAGGAAAGGATGAGTCTCTCCATGCC---A-CCTGAGATTTACTGACATATGA------ACACACATGATTGGCACGATTT---AAGAA----CCACTCACCTGCTGGCCA--TCTCTCCAGGTCTGGAGCCGGAGAAAATGATCTGAAGTTATAGCAGAAGAAATTGAGGTAGGATACT-AGAAAGC--GTTTCAGGAGG-GGGACTAGGCAACAGGTGC-AGCATGAGGGAATGAGAGTGAATGCTTGGTGT-GAAAGGA---AGTGGCGGGT-GGGGTGGGGACTTCCTTCTTTGGGTCGTCTTTGGAGGTGATTTGACAGCAAGGAACAAAGTGGCTTCAAACATGACACAAGTCTCTGG-------------------------------------------TCTGTTCTGTGTCCTGTTTTCTTTCTC--ATCCTTTCAGTGTGGAATCTATATGACCCTGGGAGGGACGTTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      74761 546 -    486031 AGTTGAG----------------TCTTGTCATATCAACGTCAAAGGC-CCAAGACCTTCCTCCTCCCCATGAGCAAACAAGCCACACCCTGCACCAGTCAACGTCCATCTCACCTTCCAG----------CTACCCCAGG-TTAT------------T-----TTCCTGGTAATGCAGTGTTTCTAGGAAAGGGTGAGTCTCTCCACCCC---A-CCTGAGATTTACTGACATATGA------ACACATATGTTTGGCATGATTT---AAGAA----CCACTCACCTGCTGGCCA--TCTCTCCAGGTCTGGAGCCGGAGAAAATGATCTGAAGTTATAGCAGAAGAAATTGAGGTAGGATACTAAGAAAGC--TTTTCAGGAGG-GGGACTAGGCAAGAGGTGC-AGCATGAGGGAATGAGAGTGAATGCTCAGTGT-GAAAGGA---AGTGGTGGGT-GGGGTGGGGACTTCCTTCTTTGGGTCATCTTTGGAGGTGATTTGACAGCAAGGAACAAAGTGGCTTCAAACATTACACAAGTCTCTGG-------------------------------------------TCTGTTCTGTGTCCTGTTTTCTTTCTC--ATCCTTTCAGTGTGGAATCTCTATGACCCTGGGAGGGATGTTGG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     160468 568 -   1411461 AGTTGAGT---------CTCAGTTCCTGTCCTATTTACGTGAAAAGT-CCAAGACTTTCCTCCTCCCCATGAGCAAATGAGCCACACCCTGCACCAACCAAAGTCCATCTCACCTTCCGC----------CTCCCCTAGG-ACATGGGGAGTTTCG-T-----TTCCTCGTAATTCCGTGTTTCCAGGAACGGGTGAGTCTCTCCAGCTCCCCA-CCGCAGTTTTACTGATGTATGA------ACATGTATAATTGGCACAACTG---AAGAA----CCACTCGCCTGCTGGCCA--TCTGCCCAGGTCTGGACCCTGAGAAAATGATCTGCAATTGCAGCCGGAGAAATTGCGGTAAGATACTAAGAGAGC--TTTTTGGGAGG-AGGGCTAGGCGAGGGGCAT-AGCATGAGGCCACGCCAGTGAATGCTCAGCATTCGAGGGA---AGCGGTGGGGCGGTG-GGGTACTTCCTTTTTTGGGTCCTCTTTGGAAGCAGTTTGACAGGAAGAGACAAAGTGGCTTCACACATTATGTGAGTCTCTGA-------------------------------------------tctgttctatgtcctgttctctttctc--tttctTTCACTACGGGATCCATATGACCCTGGAAGGGATGTTAG
i proCoq1.NW_012149775v1   I 111 I 59
s otoGar3.GL873550           309018 572 +  18854210 AGTCTAAT---------CTTAGTTCCTGTCATGTTTATGTTAAAGGT-CCAAGACTTTCCTCCTCCCCATGAGCTAACAAGCCACACCCTGCACCAAGCAAAGTCCATCTCTCCTTCCCG----------CTACCCTAGG-TCCTGGGGAGTTTTATT-----TTCCTGGTAATTCAATGTTTCCAGGAACGGGCAAGTCTCTCTACCTCCCCCTCCCCAGGTTTACTGACATATGAACATACACATGTATAATTGGCACGATTT----TGAA----CCACTCACCTGCTGGCCG--TCTTCCCAGGTCTGGAGCCTGAGGAAATGATCTGAAATTGTAGCAGGAGAAATTGAGGTAAGGTACTA----AGC--TTTTTGGCAGG-AGGACCAGGCAAGAGATGT-AACATGAAGCAATGAGAGTGAATGCCCAGTATTTAAGGGACGTGGCGGTGGGG-GGGG-GGGTGATTTCTTCTTTGGGTTATCTTTGGAGGTGGTTTGACAGGAAGAAACAAAGTGGCTTCAAACATTATATGAGTCTCTGG-------------------------------------------TCTGTTCTATGTCCTGTTCTCTTTCTC--TTCTTTTAATTATGGAATCCATATGACCCTGGCAGGGATGTAT-
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               58096983 586 -  94987271 AGTTGGTGATATTTGCATTCAAGTTCTGTGAGATTTGCATTAAAGGCACTGAGACTTTCCTCTTCCCCGTAAGAAAATATGCCACACCCTGCCA----CAAAGTTCATCTCACTGTTCAG----------TGAGTGCAGC-TCATGGGTATTTTCATT-----TCCCTGATAATTCACTG---CTGAAGCAGGAGGAATCTCTTCACCTTC--T-CCCTAGTTTCACAGGCATGTGA------GTGTATATAATTGGCATAATTC---AAGAAGAACCGGCTCATCTGCTGGTCT--TCTCCCTAGGTCTGGAGACCAAGAAAATGA-----AGTTGAAAAGGAGAGATTTGAGGTAGGGTATTAAGAGAGTAATTTTGGGGAGG-GTGCTCAAACAAGAAGTGG-GGTA------AAgaagag-----------------gagga---ggaagaggag-gagg-aggCACTTCCTTTTTTAGGTCATCCTTGGAAGTTGTTTGAAAGGAAAGGACAAAGTAGCGTCATATGTtctctctctctctctctccctctctctctccctccctccctccctccctccccctccctcccccctctctccTGTTCTCTTTCTC------TTTCAACATGACATCATTGCACTCTTGGATAACTTGATGG
i mm10.chr17               C 0 C 0
s dasNov3.JH567297            22685 552 +     53444 AACTGGCT---------GTCAATTCCTATCATGTTTACCCCGATGGCACCAAGACTTTGCTCTTCCCCATGAGCAAATGAGCCACACCCTGCACCAACCAAAGTCCACCTCACCTGCCCGGTCAATCACCCAGCCTTGTG-GAGT------------TCCATATTCCTGGGAATTTGGAGTTTCTGGGAGAGGGCGGGCCTCTTCCCTGCTCTC-CC--AGGTTCACCAACACATGA------GCTTATCTAATTGACGTGATCGGAAAAGAA----TCATTC-CCTGCTGGCCA--CCTCCCCAGATCTGGAGCACGAGACGGTGACCCGA---CGGAACAGGGAAGATTGAGGTAGGATTCTA----AGT--GTTTCAGGAGGAGGGTCTGGGCAAGAGGCATGGGCTTGAGGGAATGAAGGCGACCAAACAGTGTGTGGGGGA---A----------GGAG------CTTCCTTCTCTGGACCTTCTTTGGAGGTG-TGTGAAGGGAAGGGACTTGGGGGCCCCAAAC--TGCACAGGTCTCTGG-------------------------------------------ATTGCCCCAGGTCCCATTCTCTTTCCCTTACCTTTTCCTTGTGGAATCCATATGGCCCTGGGAAGAGAGTTGG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=738929.000000
s hg38.chr6_GL000254v2_alt  1480534  70 +   4827813 TTGGAAGAATGACCAGCTGATGGAGATGCTGCTGTAATTATTGGTGGTAATAATGGGCAG---------------CAGTGAGCCA----------------------------------------------
s panTro5.chr6             30349959  70 + 175400573 TTGGAAGAATGACCAGCTGATGGAGATGCTGCTGTAATTATTGGTGGTAATAATGGGCAG---------------CAGTGAGCCA----------------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30584305  70 + 173848474 TTGGAAGAATGACCAGCTGATGGAGATGCTGCTGTAATTATTGGTGGTAATAATGGGCAG---------------CAGTGAGCCA----------------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     291373  70 +   2037526 TTATAAGAATGACCAGCTGATGGAGATGCTGCTGTAATTATTGGTGGTAATAATGGGCAG---------------CAGTGAGCCA----------------------------------------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74958400  70 + 122973662 TTGGGAGAATGACCAGCTGATGGAGATGCTGCTGTAATGATTGGTGGTAATAATGGGCAG---------------CAGTGAGCCA----------------------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30836449  70 + 172585720 TTGGGAGAATGACCAGCTGATGGAGATGCTGCTGTAATGATTGGTGTTAATAATGGGCAG---------------CAGTGAGCCA----------------------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30125931  70 - 170955103 TTGGGAGAATGACCAGCTGATGGAGATGCTGCTGTAATGATTGGTGTTAATAATGGGCAG---------------CAGTGAGCCA----------------------------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     374853  70 +   1495729 TTGGGAGAATGACCAGCTGATGGAGATGCTGCTGTAATGATTGGTGTTAATAATGGGCAG---------------CAGTGAGCCA----------------------------------------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     476886  70 -    863181 TTGGGAGAATGACCAGCTGATAGAGATGCTGCTGTAATGATTGGTGTTAATAATGGGCAG---------------CAGTGAGCCA----------------------------------------------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29626584  70 -  71996105 TTGGGAGAATGACCAGCTGATGGAGATGCTGCTGTAATGATTGGTGTTAATAATGGGCAG---------------CAGTGAGCCA----------------------------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     340229  70 -    735854 TTGGGAGAATGACCAGCTGATGGAGATGCTGCTGTAATGATTGGTGTTAATAATGGGCAG---------------CAGTGAGCCA----------------------------------------------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     264174  70 -   1829203 TTGGGAGAATGACCAGCTGATGGAGATGCTGCTGTAATGATTGGTGCTAATAATGGGCAG---------------CAGTGAGCCA----------------------------------------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30458851  70 + 171630274 TTGGGAGAATAACCAGCTGATGGGGGTGCTGCTGTAATGATTGGTGGTACGAATGGGCAG---------------CAGTGAGCCG----------------------------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           270448  70 +    515838 TTAGGAGAATGACCAGCGGATGGGGGTGCTGCTGTCATGATTGGTGGTAGAAATGGGCAG---------------CAGTGAGCCG----------------------------------------------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     899775  70 -   1771730 TTGGGAGAATGACCAGCTGATGGGGGTGCTGCTATAATGATTGGTGGTAGGAATGGGCAG---------------CAGTGAGCTG----------------------------------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      75307  70 -    486031 TTGGGAAAATGACCAGCTGATGGGGGTGCTGCTGTGATGATTGGTGGTAGGAATGGGTAG---------------CAGTGAGCCG----------------------------------------------
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           309590  61 +  18854210 TTGGGGAAATGATTAGCTGCTAGAGATGCTGC--AAATGGTAGATAGTAATAATGGACAA---------------CCA-----------------------------------------------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58097569  68 -  94987271 -TTAATAAAGGGTCA-CTGACAAGGTTCCACCTTAAGAGGTTAGTGGTATCAAACAGCAG---------------CAGTGAGCCC----------------------------------------------
i mm10.chr17               C 0 C 0
s dasNov3.JH567297            23237 125 +     53444 TTGGGAGAATGAGAGGCTGAAAGAGAGGTGGATGCAA------ATGGTAGCAGTTGCCAAGCTCTCAGAGTGTGTCTGTGAAACACCTGGTATCAAAGTTTGGGAGACTGCAAAGTCCTGTGACTGAAACA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e proCoq1.NW_012149775v1     161036  59 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=1392977.000000
s hg38.chr6_GL000254v2_alt  1480604 109 +   4827813 CCCGGTGTGACAGTGTAGGAGAAAACAGTCCAAACTCCTGCCAAACTCTCTCTACTGATGGCAAATCAGAGGAGAC--TCAAATTG-TAAGTTTATAGTGGT----CTGGCTTTTG
s panTro5.chr6             30350029 109 + 175400573 CCCGGTGTGACAGTGTAGGAGAAAACAGTCCAAACTCCTGCCAAACTCTCTCTACTGATGGCAAATCAGAGGAGAC--TCAAATTG-TAAGTTTATAGTGGT----CTGGCTTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30584375 109 + 173848474 CCCGGTGTGACAGTGTAGGAGAAAACAGTCCAAACTCCTGCCAAACTCTCTCTACTGATGGCAAATCAGAGGAGAC--TCAAATTG-TAAGTTTATAGTGGT----CTGGCTTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     291443 109 +   2037526 CCCGGTGTGATAGTGTAGGAGAAAACAGTCCAAACTCCTGCCAAACTCTCTCTACTGATGGCAAATCAGAGGAGAC--TCAAATTG-TAAGTTTATAGTGGT----CTGGCTTTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74958470 109 + 122973662 CCTGGTGTGACAGTGTAGGAGAAAACAGTCCAAACTCCTGCCAAACTCTCTCTGCTGATGGCAAATCAGAGGAGAC--TCAAATTG-TAAGTTTATAGTTGT----CTGGCTTTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30836519 109 + 172585720 CCTGGTGTGACAGTGTAGGAGAAAACAGTCCAAACTCCCGCCAAACTCTCTCTACTGATGGCAAATCAGCGGAGAC--TCACATTG-TAAATTTATCATGGT----CTGGCTTTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30126001 109 - 170955103 CCTGGTGTGACAGTGTAGGAGAAAACAGTCCAAACTCCCGCCGAACTCTCTCTACTGATGGCAAATCAGCGGAGAC--TCACATTG-TAAATTTATCATGGT----CTGGCTTTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     374923 109 +   1495729 CCTGGTGTGACAGTGTAGGAGAAAACAGTCCAAACTCCCGCCAAACTCTCTCTACTGATGGCAAATCAGCGGAGAC--TCACATTG-TAAATTTATCGTGGT----CTGGCTTTTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     476956 109 -    863181 CCTGGTGTGACAGTGTAGGAGAAAACAGTCCAAACTCCCGCCAAACTCTCTCTACTGATGGCAAATCAGCGGAGAC--TCACATTG-TAAACTTATCGTGGT----CTGGCTTTTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29626654 109 -  71996105 CCTGGTGTGACAGTGTAGGAGAAAACAGTCCAAACTCCCGCCAAACTCTCTCTACTGATGGCAAATCAGCGGAGAC--TCACATTG-TAAATTTATCGTGGT----CTGGCTTTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     340299 109 -    735854 CCTGGTGTGACAGTGTAGGAGAAAACAGTCCAAACTCCCGCCGAACTCTCTCTACTGATGGCAAATCAGCGGAGAC--TCACATTG-TAAACTTATCGTGGT----CTGGCTTTTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     264244 109 -   1829203 CCTGGTATGACAGTTTAGGAGAAAACAGTCCAAATTCATGCCAAACTCTCTCTACTGATGGCAAATCAGCGGAGAC--TCACATTG-TAAATTTATCGTGGT----CTGGCTTTTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30458921 109 + 171630274 TCTAGTGTGACAGTGTGGGAGAAAACAGTTCAAACTCCTACCAAACTCTCTCTACTGACGGCAAATCAGCGGAGAT--TCACATTG-TAAGTTTATGGTGGT----CTGGCTTTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           270518 109 +    515838 TCTAGTGTGACAGTGTGGGAGAAAACAGTTCAAACTCCTACCAAATTTTCTCTACTGATGGCAAATCAGTGGAGAT--TCACATTG-TAAGTTTATGGTGGT----CTGGCTTTTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     899845 109 -   1771730 TCTAGTGTGACAATGTGGGAGAAAATAGTCCAAACTCCTACCAGACTCTCTCTACTGATGGCAAATCAGCGGAGAT--TCACATTG-TAAGTTTATGGTGGT----CTGGCTTTTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      75377 109 -    486031 TCTAGTGTGACAGTGTGGGAGAAAACAGTTCAAACTCCTACCAAACTCTCTCCACTGATGGCAAATCAGCGGAGAT--TCACATTG-TAAGTTTATGGTGAT----CTGGCTTATG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     161095 112 -   1411461 cccagcgtgacagtGTGGGACAGAACAGTGCAAACTCCCGCCAAACTCT-CCGACTGACAGCAAACCAGAGGAGAC--TCAAATTG-GAAGTTTAGGATGGCCTGGCTGGCTTCTG
i proCoq1.NW_012149775v1   I 59 C 0
s otoGar3.GL873550           309651 114 +  18854210 CGTAGTGTGACAGTGTGGGAGAGAACAGCCCAGACTCCCGCCAAACTCTGTCAACTGACAACAAAACACAGGAGAG--TCAAATTGTTGAGTTTATGATGGTCTGGCTGGCTTTTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58097637 103 -  94987271 TGTAGGGAACCAGCCCCAGAGGGGACACATAAAGTTCTGTCTGAATTCTCCCTGCCAGCCACA---CAGTAGAGAC--------TG-TCAGCTTGTCGTTGA-TAGTTTACTTCTG
i mm10.chr17               C 0 C 0
s dasNov3.JH567297            23362 111 +     53444 TCTGGTATCACAGTTTGGGAGAGGAAACTCTAAAGTCCTGCCAAATTCTCTGAACTGAGGGTAAATCAGAGAAGACTTTCAACTTG-TAGGCCTAGGTTGCT----CTGGTTTCTG
i dasNov3.JH567297         C 0 I 140
e micMur3.chr6               333795 29247 + 123392446 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=6404283.000000
s hg38.chr6_GL000254v2_alt  1480713 501 +   4827813 GCCATGACAATGA---------------------CACC---------------------------------------TTGCCCT----TTTAATTTGGGGCCCGTGCAAATATT-CACTGAAAGCTGTCAAGAGGAAAACAGAG----------TTGGTTATTGAATCACTTGCTTCCTCTAGG-------------TGTATG-------AAAAATAAT---TTCAAGTTTAA---CAAACACAAGGAAACCGCAGGGTCCATGTCAAAGCTGATGAGCTATTTCTGAAACTCGTGCAGAATTGTGGTTTGTGTGGTCTATGTCACGGCACCCTTGAGGGAGAGTGGGCAATTGCCTGAACTTGG-AGGCTGTGTCCTGTCC-CCAGGCTGCTCCAGGGCTGCCTCCTTCCGACTGGGCCTTCTTATCTGGG---ACTGTTGAGGGCAACAGGCCTTCCGAAGA-CCAGTGAAGAAGGAGGCCCTGCAGA-----------CAGGAGGCTGACAGGGTAGGAACAAGGCCATGATCCCTTTGCAGAAGGACAACCAGGAGGAGGGTGTCTGCCCCATCTGCCAGGAGAGCCTGAAGGAGGCCGTGAGCACCAACTGCGG
s panTro5.chr6             30350138 501 + 175400573 GCCATGACAATGA---------------------CACC---------------------------------------TTGCCCT----TTTAATTTGGGGCCCGTGCAAATATT-CACTGAAAGCTGTCAAGAGGAAAACAGAA----------TTGGTTATTGAATCACTTGCTTCCTCTAGG-------------TGTATG-------AAAAATAAT---TTCAAGTTTAA---CAAATACAAGGAAACCGCAGGGTCCATGTCAAAGTTGATGAGCTATTTCTGAAACTCGTGCAGAATTGTGGTTTGTGTGGTCTATGTCACGGCACCCTTGAGGGAGAGTGGGCAATTGCCTGAACTTGG-AGGCTGTGTCCTGTCC-CCAGGCTGCTCCAGGGCTGCCTCCTTCCGACTGGGCCTTCTTATCTGGG---ACTGTTGAGGGCAACAGGCCTTCCGAAGA-CCAGTGAAGAAGGAGGCCCTGCAGA-----------CAGGAGGCTGACAGGGTAGGAACGAGGCCATGATCCCTTTGCAGAAGGACAACCAGGAGGAGGGTGTCTGCCCCATCTGCCAGGAGAGCCTGAAGGAGGCCGTGAGCACCAACTGCGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30584484 501 + 173848474 GCCATGACAATGA---------------------CACC---------------------------------------TTGCCCT----TTTAATTTGGGGCCCGTGCAAATATT-CACTGAAAGCTGTCAAGAGGAAAACAGAA----------TTGGTTATTGAATCACTTGCTTCCTCTAGG-------------TGTATG-------AAAAATAAT---TTCAAGTTTAA---CAAATACAAGGAAACCGCAGGGTCCATGTCAAAGCTGATGAGCTATTTCTGAAACTCGTGCAGAATTGTGGTTTGTGTGGTCTATGTCACGGCACCCTTGAGGGAGAGTGGGCAATTGCCTGAACTTGG-AGGCTGTGTCCTGTCC-CCAGGCTGCTCCAGGGCTGCCTCCTTCCGACTGGGCCTTCTTATCTGGG---ACTGTTGAGGGCAACAGGCCTTCCGAAGA-CCAGTGAAGAAGGAGGCCCTGCAGA-----------CAGGAGGCTGACAGGGTAGGAACGAGGCCATGATCCCTTTGCAGAAGGACAACCAGGAGGAGGGTGTCTGCCCCATCTGCCAGGAGAGCCTGAAGGAGGCCGTGAGCACCAACTGCGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     291552 501 +   2037526 GCCATGACAATGA---------------------CACC---------------------------------------TTGCCCT----TTTAATTTGGGGCCCGTGCAAATATT-CACTGAAAGCTGTCAAGAGGAAAACAGAA----------TTGGTTATTGAATCACTTGCTTCCTCTAGG-------------TGTATG-------AAAAATAAT---TTCAAGTTTAA---CAAATAGAAGGAAACCACAGGGTCCATGTCAAAGCTGATGAGCTATTTCTGAAACTCGTGCAGAATTGTGGTTTGTGTGGTCTATGTCACGGCACCCTTGAGGGAGAGTGGGCAATTGCCTGAACTTGG-AGGCTGTGTCCTGTCC-CCAGGCTGCTCCAGGGCTGCCTCCTTCCGACTGGGCCTTCTTATCTGGG---ACTGTTGAGGGCAACAGGCCTTCCGAAGA-CCAGTGAAGAAGGAGGCCCTGCAGA-----------CAGGAGGCTGACAGGGTAGGAACAAGGCCATGATCCCTTTGCAGAAGGACAACCAGGAGGAGGGTGTCTGCCCCATCTGCCAGGAGAGCCTGAAGGAGGCCGTGAGCACCAACTGCGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74958579 503 + 122973662 GCCATGACAATGA---------------------CACC---------------------------------------TTGCTCT----TTTAATTTGGGGCCCATATAAATATT-CACTGAAAGCTGTCAAGACAAAAACAGAA----------TTGGTTATTGAATCACTTGCTTCCTCTAGG-------------TGTATGA------AAAAATAAT---TTCAAGTTTAA---CAAATACAAGGAAACCGCAGGGTCCATGTCAAAGCTGATGAGCTATTTCTGAAACTCGTGCAGAATTGCGGTTTGTGTGGTCTATGTCACGGCACCCTTGATGGAGAGTGGGCAATTGCCTGAACTTGG-AGGCTGTGTCCTGTCCTCCAGGCTGCTCCAGGGCTGCCTCCTTCCGGCTGGGCCTTCTTATCTGGG---ACTGTTGAGGGCGACAGGCCTTCCGAAGA-CCAGTGAAGAAGGAGGCCCTGCAGA-----------CAGGAGGCTGACAGGGTAGGAACGAGGCCATGATCCCTTTGCAGAAGGACAACCAGGAGGAGGGTGTCTGCCCCATCTGCCAGGAGAGCCTGAAGGAGACCGTGAGCACCAACTGCGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30836628 501 + 172585720 GCTATGATAGTGA---------------------CACC---------------------------------------TTGCCCT----TTTAATTT-GGGCCCGTAAAAATATT-CATTGAAAGCTCTCAAGAGGAAAACAGAA----------TTGGTTATTGAATCACTTGCTTCCTCTAGG-------------TGTATG-------AAAAATAAT---TTCAAGTTTAA---TAAATACAAGGAAACCGCAGGGTCCATGTCAAAGCTGATGAGCTATTTCTGAAACTCGTGCAGAATTGTGGTTTGTGTGGTCTATGTCACGGCACCCTTGATGGAGAGCGGGCAATTGCCTGAACTTGG-AGGCTGTGTCCCGTCCTCCAGGCTGCTACAGGGCTGCCTCCTTCCGGCTGGGCCTTCTTATCTGGG---ACTGTGGAGGGCGACAGGCCTTCCGAAGA-GCAGTGAAGAAGGAGGCCCTGTAGA-----------CAAGAGGCTGACAGGGTAGGAATAAGGCCATGATACCTTTGCATAAGGACAACCAGGAGGAGGGTGTCTGCCCCATCTGCCAGGAGAGCCTGAAGGAGGCTGTGAGCACCAACTGCGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30126110 501 - 170955103 GCTATGATAGTGA---------------------CACC---------------------------------------TTGCCCT----TTTAATTT-GGGCCCGTAAAAATATT-CATTGAAAGCTCTCAAGAGGAAAACAGAA----------TTGGTTATTGAATCACTTGCTTCCTCTAGG-------------TGTATG-------AAAAATAAT---TTCAAGTTTAA---TAAATACAAGGAAACCGCAGGGTCCATGTCAAAGCTGATGAGCTATTTCTGAAACTCGTGCAGAATTGTGGTTTGTGTGGTCTATGTCACGGCACCCTTGATGGAGAGCGGGCAGTTGCCTGAACTTGG-AGGCTGTGTCCTGTCCTCCAGGCTGCTACAGGGCTGCCTCCTTCCGGCTGGGCCTTCTTATCTGGG---ACTGTTGAGGGCGACAGGCCTTCCGAAGA-CCAGTGAAGAAGGAGGCCCTGTAGA-----------CAGGAGGCTGACAGGGTAGGAATAAGGCCATGATACCTTTGCATAAGGACAACCAGGAGGAGGGTGTCTGCCCCATCTGCCAGGAGAGCCTGAAGGAGGCCGTGAGCACCAACTGCGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     375032 501 +   1495729 GCTATGATAGTGA---------------------CACC---------------------------------------TTGCCCT----TTTAATTT-GGGCCCGTAAAAATATT-CATTGAAAGCTCTCAAGAGGAAAACAGAA----------TTGGTTATTGAATCACTTGCTTCCTCTAGG-------------TGTATG-------AAAAATAAT---TTCAAGTTTAA---TAAATACAAGGAAACCGCAGGGTCCATGTCAAAGCTGATGAGCTATTTCTGAAACTCGTGCAGAATTGTGGTTTGTGTGGTCCATGTCACGGCACCCTTGATGGAGAGCGGGCAGTTGCCTGAACTTGG-AGGCTGTGTCCTGTCCTCCAGGCTGCTACAGGGCTGCCTCCTTCCGGCTGGGCCTTCTTATCTGGG---ACTGTTGAGGGCGACAGGCCTTCCGAAGA-CCAGTGAAGAAGGAGGCCCTGTAGA-----------CAGGAGGCTGACAGGGTAGGAATAAGGCCATGATACCTTTGCATAAGGACAACCAGGAGGAGGGTGTCTGCCCCATCTGCCAGGAGAGCCTGAAGGAGGCTGTGAGCACCAACTGCGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     477065 501 -    863181 GCTATGATAGTGA---------------------CACC---------------------------------------TTGCCCT----TTTAATTT-GGGCCCGTAAAAATATT-CATTGAAAGCTCTCAAGAGGAAAACAGAA----------TTGGTTATTGAATCACTTGCTTCCTCTAGG-------------TGTATG-------AAAAATAAT---TTCAAGTTTAA---TAAATACAAGGAAACTGCAGGGTCCATGTCAAAGCTGATGAGCTATTTCTGAAACTCGTGCAGAATTGTGGTTTGTGTGGTCTATGTCACGGCACCCTTGATGGAGAGCGGGCAATTGCCTGAACTTGG-AGGCTGTGTCCTGTCCTCCAGGCTGCTACAGGGCTGCCTCCTTCCGGCTGGGCCTTCTTATCTGGG---ACTGTTGAGGGCGACAGGCCTTCCGAAGA-GCAGTGAAGAAGGAGGCTCTGTAGA-----------CAAGAGGCTGACAGGGTAGGAATAAGGCCATGATACCTTTGCATAAGGACAACCAGGAGGAGGGTGTCTGCCCCATCTGCCAGGAGAGCCTGAAGGAGGCCGTGAGCACCAACTGCGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29626763 501 -  71996105 GCTATGATAGTGA---------------------CACC---------------------------------------TTGCCCT----TTTAATTT-GGGCCCGTAAAAATATT-CATTGAAAGCTCTCAAGAGGAAAACAGAA----------TTGGTTATTGAATCACTTGCTTCCTCTAGG-------------TGTATG-------AAAAATAAT---TTCAAGTTTAA---TAAATACAAGGAAACCGCAGGGTCCATGTCAAAGCTGATGAGCTATTTCTGAAACTCGTGCAGAATTGTGGTTTGTGTGGTCTATGTCACGGCACCCTTGATGGAGAGCGGGCAATTGCCTGAACTTGG-AGGCTGTGTCCTGTCCTCCAGGCTGCTACAGGGCTGCCTCCTTCCGGCTGGGCCTTCTTATCTGGG---ACTGTTGAGGGCGACAGGCCTTCCGAAGA-CCAGTGAAGAAGGAGGCCCTGTAGA-----------CAAGAGGCTGACAGGGTAGGAATAAGGCCATGATACCTTTGCATAAGGACAACCAGGAGGAGGGTGTCTGCCCCATCTGCCAGGAGAGCCTGAAGGAGGCCGTGAGCACCAACTGCGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     340408 501 -    735854 GCTACGATAGTGA---------------------CACC---------------------------------------TTGCCCT----TTTAATTT-GGGCCCGTAAAAATATT-CATTGAAAGCTCTCAAGAGGAAAACAGAA----------TTGGTTATTGAATCACTTGCTTCCTCTAGG-------------TGTATG-------AAAAATAAT---TTCAAGTTTAA---TAAATACAAGGAAACCGCAGGGTCCATGTCAAAGCTGATGAGCTATTTCTGAAACTCGTGGAGAATTGTGGTTTGTGTGGTCTATGTCACGGCACCCTTGATGGAGAGCGGGCAGTTGCCTGAACTTGG-AGGCTGTGTCCTATCCTCCAGGCTGCTACAGGGCTGCCTCCTTCCGGCTGGGCCTTCTTATCTGGG---ACTGTTGAGGGCGACAGGCCTTTCGAAGA-GCAGTGAAGAAGGAGGCTCTGTAGA-----------CAGGAGGCTGACAGGGTAGGAATAAGGCCATGATACCTTTGCATAAGGACAACCAGGAGGAGGGTGTCTGCCCCATCTGCCAGGAGAGCCTGAAGGAGGCCGTGAGCACCAACTGCGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     264353 501 -   1829203 GCCATGATAGTGA---------------------TACC---------------------------------------TTGCCCT----TTTAATTT-GGGCCTGTAAAAATATT-CATTGAAAGCTCTCAAGAGGAAAACAGAA----------TTGGTTATTGAATCACTTGCTTCCTCTAGG-------------TGTATG-------AAAAATAAT---TTCAAGTTTAA---TAAATACAAGGAAACCGCAGGGTCCATGTCAAAGCTGATGAGCTATTTCTGAAACTCATGCAGAATTGTGGTTTGTGTGGTCTATGTCACGGCACCCTTGATGGAGAGCGGGCAATTGCCTGAACTTGG-AGGCTGTGTCCTGTCCTCCAGGCTGCTACAGGGCTGCCTCCTTCCTGCTGGGCCTTCTTATCTGGG---ACTGTTGAGGGTGACAGGCCTTCCGAAGA-CCAGTGAAGAAGGAGGCCCTGTAGA-----------CAGGAGGCTGACAGGGTAGGAATAAGGCCATGATACCTTTGCATAAGGACAACCAGGAGGAGGGTGTCTGCCCCATCTGCCAGGAGAGCCTGAAGGAGGCCGTGAGCACCAACTGCGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30459030 512 + 171630274 GCCACGACATTGA---------------------CACC---------------------------------------TTGCCCT----TTTAATTTGGGGCCCATAAAAATATT-CACATAAGGCTCTCAAGAGGAAAAC-GAG----------TTAGCTATTGCATCACTTGCTTCCTCTAGG-------------TGTATG-------AAAAATAAT---TTCAAGCTTGA---CAAATACAAGGAAACTGCAGGGTCCATGTGAAAGCTGATAAGCTATTTCTGAAACTTGTGCAGAATTGTGGTTTGTGTGGTCTATGTCACGGCATCCTTGAAGGAGAGCGGGCAATTGCCTGAAGTTAG-AGGCTGTGTCCTATTCTCCAGGCTGCTCCAGGGCTGCCTCCTTCCAACCCGGCCTTCTTATCTGGG---ACTATTGAGGGCCACAGGCCTTCCGAAGT-CCAGTGAGGAAGGAGACCCTGCAGACAGAAGGCAGGCAGGAGGCTGACAGGGTGGGGATAAGGCCATGATCCCCTTGCATAAGGACACCCAGGAGGAGGGTGTCTGCCCCATCTGCCAGGAGAGCCTGAAGGAGGCCATGAGCACCAAATGTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           270627 512 +    515838 GCCATGACATTGA---------------------CACC---------------------------------------TTGCCCT----TTTAACTTGGGCCTCATAAAAATATT-CACATAAGGCTCTCAAGAGGAAAACAGGG----------TTAGTTATTGCATCACTTACTTCCTTTAGG-------------TGTATG-------AAAAATAAT---TTCAAGTTTGA---CAAATACAAGGAAACTGCAGGGTCCATGTGAAAGCTGATAAGCTATTTCTGAAACTTGTGCAGAATTGTGGTTTGTGTGGTCTATGTCATGGCATCCTTGACGGGGAGCGGGCAATTGCCTGAAGTTAG-AGGCTGTGTCCTGTTCTCCAGGCTGCTCCAGGGCTGCCTCCTTCCAACCGGGCCTTCTTATCTGGG---ACTATTGA-GGCCACAGGCCTTCCGAAGA-CCAGTGAGGAAGGAGGCTCTGCAGACAAGAGGCAGGCAGGAGGCTGGCAGGGTGGGGACACGGCCATGATCCCTTTGCATAAGGACACCCAGGAGGAGGGTGTCTGCCCCATCTGCCAGGAGAGCCTGAAGGAGGCCATGAGCACCAAATGTGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     899954 513 -   1771730 GCCATGACATTGA---------------------CACT---------------------------------------TTGCCCT----TTTGATTTGGGGCCCATAAAAATATT-CACATAAGGCTCTCAAGAGGAAAACAGAG----------TTAGTTATTGCATCACTTGCTTCCTCTAGG-------------TGTATG-------AAAAATAAT---TTCAAGTTTGA---CAAATACAAGGAAACTGCAGGGTCCATGTGAAAGCTGATAAGCTATTTCTGAAACTTGTGCAGAATTGTGGTTTGTGTGGTCTATGTCACGGCATCCTTGATGGAGAGTGGGCAATTGCCTGAAGTTAG-AGGCTGTGTCCTGATCTCCAGGCTGCTCCAGGGCTGCCTCCTTCCAACCGGGCCTTCTTATCTGGG---ACCCTTGAGGGCTACAGGCCTTCCGAAGA-CCAGTGAAGAAGGAGGCCCTGCAGACAGGAGGCAGGCAGAAGGCTGACAGGGTGGGGACAAGGCCATGATCCCTTTGCATAAGGACACCCAGGAGGAGGGTGTCTGCCCCATCTGCCAGGAGAGCCTGAAGGAGGCCGTGAGCACCAAATGTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      75486 502 -    486031 GCCATGACATTGA---------------------CACC---------------------------------------TTGCCCT----TCTAATTTTGGGCCCATAAAAATATT-CACATAAGGCTCTCAAGAGGAAAATAGAG----------TTAGTTATTGCATCACTTGCTTCCTCTAGG-------------TGTGTG-------AAAAATAAT---TTCAAGTTTGA---CAAATACAAGGAAACTGCGGGGTCCATGTGAAAGCTGATAAGCTATTTCTGAAACTTGTGCAGAATTGTGGTTTCTGTGGTCTATGTCACGGCGTCCTTGATGGAGAGTGGGCAATTGCCTGAAGTTAG-AGGCTGTGTCCTGTTCTCCAGGCTGCTCCAGGGTTTCCTCCTTCCAACCGGGCCTTCTTATCTGGG---ACTATTGAGGGCCACGGGGCTTCCAAAGA-CCAGTAAGGAAGGAGGCCCTGCAGA-----------CAGGAGGCTGACAGGGTGGGGACAAGGCCATGATCCCTTTGCATAAGGACACCCAGGAGGAGGGTGTCTGCCCCATCTGCCAGGAGAGGCTGAAGGAGGCCGTGAGCACCAAATGTGG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     161207 495 -   1411461 GCCATGACAAGGA---------------------CACC---------------------------------------CTGGCCT----TTTAGTTC-GGGGCTATAAAAATACT-CACAGAACACTCTCCAGAGGAAAACAGAA----------TTGGTTATTGAATCACCTGCTTCCTCCAGA-------------TGTATG-------AAAAATAAAG--TTCAGGTTTAG---CGAATACGAGGAAACCAGAGGGAGAGTATCAAAACTGATGAGACATTTCAGAAGCTCGTGCGGAATCACAGTGTGTGTGGTCCATGCAGCGGCG-CCTTGATGGAGAGTGGCCAGTTGCCTGAAGCTGC-AGCCTGAGTCCTGTCCTCCAGGCTGCT-CAGGGCTGCCTCCTTCC--CTGGGCCT-CTTATCTGGG---ACTGTTGAGTGCAACAGGCCTTCCGAAGACCCGGTAGAAAAGGAGGTCCCGTAGA-----------CA-GAGGCTGGT-GGGTGAGGAGGAGGCCATGGTCCCTTTGCACAAGGACAGCTGGGAGGAGGAAATCTG-CCCATCTGCCAGGCGTGACTGAAGGAGGCCTTGAGCACTGACTGCGG
i proCoq1.NW_012149775v1   C 0 I 1213
s otoGar3.GL873550           309765 466 +  18854210 GCCATGACAGTGA---------------------CACC---------------------------------------CTTGCCT----TGTAATTT-GGGGCCATAAAAATATT-CACAGAAAGCTCTCAAGAGGGAAACAGAA----------CTGGTTATTGAATCACCTGCTTCCCCCAAG-------------TGTATG-------AAAAATAAAGACTTCAAACTTAGCAACAAATATGAGGAAACCAGAAGGTGCATGTCAAAACTGACAGGGTATTTCTGAAATTTGTGCAGAATCGTGGTTTGTGTGGTCCGTGCCGCTGCTCCCTTGATGGA------------ACTTGAAGTTGG-AAGCTAAGTCCTGTCCTCCGGGCTTCTCCAGGGCTGCCTTCTTCT------GCCT---------------------------ACAAGCCTTCCGAAGACCCAGCAGAGAAGGAGGTCCTGTAGA-----------CAGGAGGCTGTTGGGGTGAGGAGGAGGCCATGCTCCCTTTATGCAAGGAGACCAAGGAGGCAGGAATCTGCCCCATTTGCCAGGAGTGCCTGAAGGAGGCAGTGAGCACCAACTGCGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58097740 430 -  94987271 GCCATGACCGTAA---------------------CAAG---------------------------------------GTGGCCTAAAATTTAGCTT-TAAACTGTAAAACGATTGCACAGAAAACTCTC------AAAACAGAA----------TTGGGGTTTGGAGCTCCTGCTTCCTCCAGGTCTGTGGAAGAATTGTATA-------AGGAATAGT---TTCAAGTTTAG---CAAATAC-------------------------------TGAGTTTTTTTTGAAATCCCTGCAGGATTGTGTCTCTTATAGTCCAGACTCTGGACTCTCTGAT----AGTGGACAGTGGCCTTAAGTCCA-GGCCCCAGTCC---ACTTTATCTTGCTCCAGA----TCACCTTCT-ACCGAGCCCTTTCACATGGG---ACAAT---------CTGGCCTTCAAAAGA-CC-------------------CAGT-----------GGGGAGACTAGTGAGGTGGGA------CCATGGGCTCTCTTGACAAGGACAACCAGGA------CATTTGTCCTATCTGCCTGGATCCCCTGAAGGAGGCTGTGAGCACCGACTGCAG
i mm10.chr17               C 0 C 0
s dasNov3.JH567297            23613 547 +     53444 gccatcaccatcatgcatcaccacggcttttcatcaccccaacaggaactctgtaccaatttagctttaattccctattGACCT----TTTGGTTT-GGGGCTATAATAGTTTC-TACAGAA--CAAACAAGAGGAAAATAGAATTTTTTTTGGTTTATTTTTGAATTTCCTCCTTCATCTAGT-------------TGTATGAAGAGTGAAGAGTGAC---TTCAAGTTGAG---CAGATACCAGGAAACCAGAAGGTACTCCCCAAAGC-GTTTGGGTGTTCCTGAACCTTACGCAGGGCCGGGG---AGGTGGCCCACACCACGGCTCCCTTGGTGG--AGTGGTCGGTTGCCAGAGCGGGGAAGGCTGAGCCGGGTTCTCTTGGCTGTTCCAGGGCTGGCTCC--CCTGCCGGGCCATCTCCTCTGGGCATCCTCCTGTGG----TGGGGCTTCAGAGAC-CCAGTG-----------------GG-----------AAGGAGGCTGGT-GGGTGGGG---GGGCCATGATCCCTTTGCAGAAGGACGTCCAGGAGGAGGACATCTGCCCCATATGCCAGGAGCACCTAAAGGAGGCAGTGAGCACTGAAGGCAA
i dasNov3.JH567297         I 140 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=398620.000000
s hg38.chr6_GL000254v2_alt  1481214 26 +   4827813 ACATCTCTTCTGTCGAGTGTGCCTGA
s panTro5.chr6             30350639 26 + 175400573 ACATCTCTTCTGTCGAGTGTGCCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30584985 26 + 173848474 ACATCTCTTCTGTCGAGTGTGCCTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     292053 26 +   2037526 ACATCTCTTCTGTCGAGTGTGCCTGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74959082 26 + 122973662 ACATCTCTTCTGTCGAGTGTGCCTGA
i nomLeu3.chr1a            C 0 M 100
s rheMac8.chr4             30837129 26 + 172585720 ACATCTCTTCTGTCGAGTGTGCCTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30126611 26 - 170955103 ACATCTCTTCTGTCGAGTGTGCCTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     375533 26 +   1495729 ACATCTCTTCTGTCGAGTGTGCCTGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     477566 26 -    863181 ACATCTCTTCTGTCGAGTGTGCCTGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29627264 26 -  71996105 ACATCTCTTCTGTCGAGTGTGCCTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     340909 26 -    735854 ACATCTCTTCTGTCGAGTGTGCCTGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     264854 26 -   1829203 ACATCTCTTCTGTCGAGTGTGCCTGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30459542 26 + 171630274 ACATCTCTTCTGTCGAGTGTGCCTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           271139 26 +    515838 ACATCTCTTCTGTCGAGTGTGCCTGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     900467 26 -   1771730 ACATCTCTTCTGTCGAGTGTGCCTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      75988 26 -    486031 ACATCTCTTCTGTCGAGTGTGCCTGA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           310231 26 +  18854210 ACACCTATTCTGTAGAGTGTGCCTGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58098170 26 -  94987271 ACATCTCTTCTGCCGCATGTGCCTGA
i mm10.chr17               C 0 C 0
s dasNov3.JH567297            24160 26 +     53444 ACACCTCTTCTGTCGAGGGTGCCTGG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=3980158.000000
s hg38.chr6_GL000254v2_alt  1481240 349 +   4827813 CACAGCATGTGGAGAAGGCCTCAGCCTCTGG---GGTCTTCTGCTGCCCCCTCTGCCGGAAGCCCTGTTCTGAGGAGGTGCTAGGGACAGGCTATATCTGCCCCAACCACCAGAAGAGGGTGTGCAGGTTCTGTGAGGAGAGCAGACTTCTTCTATGTGTGGAATGCTTGGTGTCCCCTGAACACATGTCTCATCATGAACTGACCATTGAAAATGCCCTCAGCCACTACAAGGTAAGCCTGGGTCACCGCAGCCAGGC-CCTGCCTCCACCTCGCTGAGGTGCTGCATCC--TACATGTTCATCATGCCTGGCACCTCAGAGTAGCTCAACAATGGACATCTCTCTTTGTTTCT
s panTro5.chr6             30350665 349 + 175400573 CACAGCATGTGGAGAAGGCCTCAGCCTCTGG---GGTCTTCTGCTGCCCCCTCTGCCGGAAGCCCTGTTCTGAGGAGGTGCTAGGGACAGGCTATATCTGCCCCAACCACCAGAAGAGGGTGTGCAGGTTCTGTGAGGAGAGCAGACTTCTTCTATGTGTGGAATGCCTGGTGTCCCCTGAACACATGTCTCATCATGAACTGACCATTGAAAATGCCCTCAGCCACTACAAGGTAAGCCTGGGTCACCGCAGCCAGGC-CCTGCCTCCACCTCGCTGAGGTGCTGCATCC--TACATGTTCATCATGCCTGGCACCTCAGAGTAGCTCAACAATGGACATCTCTCTTTGTTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30585011 349 + 173848474 CACAGCATGTGGAGAAGGCCTCAGCCTCTGG---GGTCTTCTGTTGCCCCCTCTGCCGGAAGCCCTGTTCCGAGGAGGTGCTAGGGACAGGCTATATCTGCCCCAACCACCAGAAGAGGGTGTGCAGGTTCTGTGAGGAGAGCAGACTTCTTCTATGTGTGGAATGCCTGGTGTCCCCTGAACACATGTCTCATCATGAACTGACCATTGAAAATGCCCTCAGCCACTACAAGGTAAGCCTGGGTCACCGCAGCCAGGC-CCTGCCTCCACCTCGCTGAGGTGCTGCATCC--TACATGTTCATCATGCCTGGCACCTCAGAGTAGCTCAACAATGGACATCTCTCTTTGTTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     292079 349 +   2037526 CACAGCATGTGGAGAAGGCCTCAGCCTCTGG---GGTCTTCTGCTGCCCCCTCTGCCGGAAGCCCTGTTCCGAGGAGGTGCTAGGGACAGGCTATATCTGCCCCAACCACCAGAAGAGGGTGTGCAGGTTCTGTGAGGAGAGCAGACTTCTTCTATGTGTGGAATGCCTGGTGTCCCCTGAACACATGTCTCATCATGAACTGACCATTGAAAATGCCCTCAGCCACTACAAGGTAAGCCTGGGTCACCGCAGCCAGGC-CCTGCCTCCACCTCGCTGAGGTGCTGCATCC--TACATGTTCATCATGCCTGGCACCTCAGAGTAGCTCAACAATGGACATCTCTCTTTGTTTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30837155 349 + 172585720 CACAGCACGTGGAGAAGGCCTCAGCCTCCGG---GGTCTTCTGCTGCCCCCTCTGCCGGAAGCCCTGTTCTGAGGAGGTGCTGGGGACAGGCTATATCTGCCCCAACCACCAGAAGAGGGTGTGCAGATTCTGTGAGGAGAGCAGACTTCTTCTATGTGTGGAATGCCTGGTGTCCCCTGAACACGTGTCTCATCATGAACTGACCATAGAAAATGCCCTCAGCCACTACAAGGTAAGCCTGGGTCACTGCAGCCAGGC-CCTGCTCCCACCTCCCTGAAGTACTGCATCC--TACATGTTCATCATGCCTGGCACCTCAGAGTAGCTCAACAATGGACACCTCTCTTTGTTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30126637 349 - 170955103 CACAGCACGTGGAGAAGGCCTCAGCCTCCGG---GGTCTTCTGCTGCCCCCTCTGCCGGAAGCCCTGTTCTGAGGAGGTGCTGGGGACAGGCTATATCTGCCCCAACCACCAGAAGAGGGTGTGCAGATTCTGTGAGGAGAGCAGACTTCTTCTATGTGTGGAATGCCTGGTGTCCCCTGAACACGTGTCTCATCATGAACTGACCATAGAAAATGCCCTCAGCCACTACAAGGTAAGCCTGGGTCACTGCAGCCAGGC-CCTGCCCCCACCTCCCTGAAGTACTGCATCC--TACATGTTCATCATGCCTGGCACCTCAGAGTAGCTCAACAATGGACACCTCTCTTTGTTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     375559 349 +   1495729 CACAGCACGTGGAGAAGGCCTCAGCCTCCGG---GGTCTTCTGCTGCCCCCTCTGCCGGAAGCCCTGTTCTGAGGAGGTGCTGGGGACAGGCTATATCTGCCCCAACCACCAGAAGAGGGTGTGCAGATTCTGTGAGGAGAGCAGACTTCTTCTATGTGTGGAATGCCTGGTGTCCCCTGAACACGTGTCTCATCATGAACTGACCATAGAAAATGCCCTCAGCCACTACAAGGTAAGCCTGGGTCACTGCAGCCAGGC-CCTGCCCCCACCTCCCTGAAGTACTGCATCC--TACATGTTCATCATGCCTGGCAACTCAGAGTAGCTCAACAATGGACACCTCTCTTTGTTTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     477592 349 -    863181 CACAGCACGTGGAGAAGGCCTCAGCCTCCGG---GGTCTTCTGCTGCCCCCTCTGCCGGAAGCCCTGTTCTGAGGAGGTGCTGGGGACAGGCTATATCTGCCCCAACCACCAGAAAAGGGTGTGCAGATTCTGTGAGGAGAGCAGACTTCTTCTATGTGTGGAATGCCTGGTGTCCCCTGAACACGTGTCTCATCATGAACTGACCATAGAAAATGCCCTCAGCCACTACAAGGTAAGCCTGGGTCACTGCAGCCAGGC-CCTGCTCCCACCTCCCTGAAGTACTGCATCC--TACATGTTCATCATGCCTGGCACCTCAGAGTAGCTCAACAATGGACACCTCTCTTTGTTTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29627290 349 -  71996105 CACAGCACGTGGAGAAGGCCTCAGCCTCCGG---GGTCTTCTGCTGCCCCCTCTGCCGGAAGCCCTGTTCTGAGGAGGTGCTGGGGACAGGCTATATCTGCCCCAACCACCAGAAGAGGGTGTGCAGATTCTGTGAGGAGAGCAGACTTCTTCTATGTGTGGAATGCCTGGTGTCCCCTGAACACGTGTCTCATCATGAACTGACCATAGAAAATGCCCTCAGCCACTACAAGGTAAGCCTGGGTCACTGCAGCCAGGC-CCTGCTCCCACCTCCCTGAAGTACTGCATCC--TACATGTTCATCATGCCTGGCACCTCAGAGTAGCTCAACAATGGACACCTCTCTTTGTTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     340935 349 -    735854 CACAGCACGTGGAGAAGGCCTCAGCCTCCGG---GGTCTTCTGCTGCCCCCTCTGCCGGAAGCCCTGTTCTGAGGAGGTGCTGGGGACAGGCTATATCTGCCCCAACCACCAGAAGAGGGTGTGCAGATTCTGTGAGGAGAGCAGACTTCTTCTATGTGTGGAATGCCTGGTGTCCCCTGAACACGTGTCTCATCATGAACTGACCATAGAAAATGCCCTCAGCCACTACAAGGTAAGCCTGGGTCACTGTAGCCAGGC-CCTGCTCCCACCTCCCTGAAGTACTGCATCC--TACATGTTCATCATGCCTGGCACCTCAGAGTAGCTCAACAATGGACACCTCTCTTTGTTTCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     264880 348 -   1829203 CACAGCACGTGGAGAAGGCCTCAACCTCTGG---GGTCTTCTGCTGCCCACTCTGCCGGAAGCCCTGTTCTGAGGAGGTGCTGGGGACAGGCTATATCTGCCCCAACCACCAGAAGAGGGTGTGCAGATTCTGTGAGGAGAGCAGACTTCTTCTATGTGTGGAATGCCTGGTGTCCCCTGAACACGTGTCTCATCATGAACTGACCATAGAAAATGCCCTCAGCCACTACAAGGTAAGCCTGGGTCACTGCAGCCAGGC-CCTGC-CCCACCTCCCTGAAGTACTGCATCC--TACATGTTCATCATGCCTGGCACCTCAGAGTAGCTCAACAATGGATATCTCTCTTTGTTTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30459568 349 + 171630274 AACAGCATGTGGAGAAGGCCTCAGCCTCCGG---GGTCATCTGCTGCCCCCTCTGCCGGAAGCCCTGTTCTGAGGAAGTGCTGGGAACAGGTTATATCTGTCTCAACCACCAGAAGAGGGTGTGCAGGTTCTGTGAGGAGAGCAGACTTCTTCTGTGTTTGGAATGCCTGGTGTCCCCTGAACACACGTCTCATCATGAGCTGACCATTGAAAATGCCCTCAGTCACTACAAGGTAAGCCCCGGTCACTGTAGCCAGAC-CCTGCCCCCGCCCCCCTGAGGTGCTGCATTC--TGCATGTTCATCATGCCTGGCACCTCAGAATAGCTCGACAACGGACACCTCTCTTTGTTTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           271165 348 +    515838 AACAGCACGTGGAGAAGGCCTCAGCCTCCGG---GGTCATCTGCTGCCCCCTCTGCCGGACGCCCTGTTCCGAGGAGGTGCTGGGAACAGGTTATATCTGCCTCAACCACCAGAAGAGGGTGTGCAGGTTCTGTGAGGAGAGTAGACTTCTTCTATGTGTGGAATGCCTGGTGTCCCCTGAACACACATCTCATCGTGAGCTGACCATCGAAAATGCCCTCAGTCACTACAAGGTAAGCCCCGGTCACCGTAGCCAG-C-CCTGTCCCCACCTCCCTGAGGTACAGCATCC--TACGTGTTCATCATGCCTGGCACCTCAGAATAGCTCATCAACGGACACCTCTCTTTGTTTCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     900493 348 -   1771730 AACAGCATGTGGAGAAGGCCTCAGCCTCTGG---GGTCATCTGCTGCCCCCTCTGCCGGAAGCCCTGTTCCGAGGAGGTGCTGGGAACAGGTTATATCTGCCTCAACCACCAGAAGAGGGTGTGCAGGTTCTGTGAGGAGAGCAGACTTCTTCTGTGTGTGGAATGCCTGGTGTCCCCTGAACACACGTCTCATCGTGAGCTGACCATTGAAAATGCCCTCAGTCACTACAAGGTAAGCCCCAGCCACCATAGCCAG-G-CCTGCCCCCACCTCCCTGAGGTATGGCATCC--TACATGTTCATCATACCTGGCACCTCAGAATAGCTGGACAATGGACACCTCTCTTTGTTTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      76014 349 -    486031 AACAGCATGTGGAGAAGGCCTCAGCCTCCGG---GGTCATCTGCTGCCCCCTCTGCCGGAAGCCCTGTTCTGAGGAGGTGCTGGGAACAGGTTATATCTGCCTCAACCACCAGAAGAGGGTGTGCAGGTTCTGTGAGGAGAGCAGACTTCTTCTGTGTGTGGAATGCCTGGTGTCCCCTGAACACACATCTCATCGTGAGCTGACCATTGAAAATGCCCTCAGTCACTACAAGGTAAGCCCCGGTCACAGCAGCCAGGG-CCTGCCCCCGCCTCCCTGAGGCACTGCATCC--TACATGTTCATCATGCCTGGCACCTCAGAATAGCTCGACAACGGACACTTCTCTTTGTTTCT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           310257 348 +  18854210 CCCAGCACGTGGAGAAGGCCTCAACCTCCGG---AGCCCTTTGCTGCCCTGTCTGCCGGAAGCCCTACTCTGAAGGGGTGCTGGGGAAAGGCTATATCTGCCTCAGCCACCAGAAGAGGGTGCGCATGTTTTGTGAGGAAAGGAGACTGCTTCTGTGTATGGAATGCCTGGTGTCCCCCGAACACAAGTCTCATCGGGAGCTGGCCATTGAAAATGCCATCAGCCACTACAAGGTAAGACTGGGTCACTGTGGCCGGCCTCCTGTCCTTGTGTCCTTGAGCTGCTCCTTCC--TACATGTTCATTATGCCTGACCCCTCAGAGAGGGTCCACAACTGACACCTTTC--TGTTTCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58098196 312 -  94987271 CCCAGCACATGGATAAGGCTTCAGTCTCTGG---GATTCTCAGCTGCCCAGTCTGCAGGAAGCCATGTTCCGAGGGGGTCCTTGGAGACAATTACATCTGCCACACCCACCAGAAGAGGGTGCGCAGGTTCTGTGAGGCTAGCGGACATCTCTTGTGTGAGGAATGCCTCCAATCCCCTGAACACCAGTCCCATACTGAACTCTCCATTGAAAATGCCATCAGCCACTACAAGGTAAGCTTGTGTCACCCCA-TTGGAC-CCTTCCT-----------------------------AAGTTCA---------GATCCTCACAGAGGCTTGGTAACTGACACTCTCCTTTGACTTT
i mm10.chr17               C 0 C 0
s dasNov3.JH567297            24186 332 +     53444 CCAAGCACCTG---AAGGCCTTGGCCTCTGGAGAAGCCCTCTGCTGCCCCACCTGCCG-------------GAGGAGATGCTGGGGGCAGGCTACGTCTGCCAGCGCCACGAGAAGAAGGTGAGCTGGTTCTGTGAAGACAGCCACCTTCTTCTGTGTGAGGAATGCCTGGCGTCCTCTGAGCACCGGCCTCCCCACCTGCTGGCCATTGAGGATGCCATCAGGCACTACAAGGTAAGGCCAGGTCGTCGT-GCTGTCC-CCCGTCACCATCCCAC----GTCGTGCCTTCCTTCCCCGTTCTTCATG-GTGCCGCATCATAGAGGAGCAAAAACTGACTCCTCTCTTTCttttt
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e nomLeu3.chr1a            74959108 100 + 122973662 M

a score=15561.000000
s hg38.chr6_GL000254v2_alt  1481589 1 +   4827813 T
s panTro5.chr6             30351014 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30585360 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     292428 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74959208 1 + 122973662 T
i nomLeu3.chr1a            M 100 C 0
s rheMac8.chr4             30837504 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30126986 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     375908 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     477941 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29627639 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     341284 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     265228 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30459917 1 + 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           271513 1 +    515838 T
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     900841 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      76363 1 -    486031 T
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           310605 1 +  18854210 T
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58098508 1 -  94987271 T
i mm10.chr17               C 0 C 0
s dasNov3.JH567297            24518 1 +     53444 t
i dasNov3.JH567297         C 0 I 149
e micMur3.chr6               333795 29247 + 123392446 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=359044.000000
s hg38.chr6_GL000254v2_alt  1481590 28 +   4827813 CTGCTTCATCCTGTTTTGGACCCTTGTC
s panTro5.chr6             30351015 28 + 175400573 CTGCTTCATCCTGTTTTGGACCCTTGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30585361 28 + 173848474 CTGCTTCATCCTGTTTTGGACCCTTGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     292429 28 +   2037526 CTGCTTCATCCTGTTTTGGACCCTTGTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74959209 28 + 122973662 CTGCTTCATCCTGTTTTGGACCCTTGTC
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             30837505 28 + 172585720 CTGCTTCATCCTGTTTTGGACCCTTGTC
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             30126987 28 - 170955103 CTGCTTCATCCTGTTTTGGACCCTTGTC
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     375909 28 +   1495729 CTGCTTCATCCTGTTTTGGACCCTTGTC
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     477942 28 -    863181 CTGCTTCATCCTGTTTTGGACCCTTGTC
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29627640 28 -  71996105 CTGCTTCATCCTGTTTTGGACCCTTGTC
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1     341285 28 -    735854 CTGCTTCATCCTGTTTTGGACCCTTGTC
i manLeu1.NW_012107142v1   C 0 I 4927
s colAng1.NW_012115577v1     265229 28 -   1829203 CTGCTTCATCCTGTTTTGGACCCTTGTC
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30459918 28 + 171630274 CTGCCTCATCCTATTTTGGACCCTTGTC
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           271514 28 +    515838 CTGCTTCCTCCTATTTTGGACCCTTGTC
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     900842 28 -   1771730 CTGCTTCATTCTATTTTGAACCCTTGTC
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496901v1      76364 27 -    486031 CT-CTTCATCCTATTTTGGACCCTTGTC
i aotNan1.NW_018496901v1   C 0 I 1
s otoGar3.GL873550           310606 28 +  18854210 CTGCTTCATCCTCCTTCGGACCCTTGTC
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58098509 27 -  94987271 CTG-GTCATCCAACTTGGGGCCTTGGTC
i mm10.chr17               C 0 I 1
s dasNov3.JH567297            24668 28 +     53444 ctgctgcaccacatggtcaaGCCTTGTC
i dasNov3.JH567297         I 149 I 1
e micMur3.chr6               333795 29247 + 123392446 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=4836345.000000
s hg38.chr6_GL000254v2_alt  1481618 435 +   4827813 TTGCTTTTCTGTGTA---------TATTTTGAGGCTG---AT------GTTTCCATGCATCAATGTGAGTCTGTCTAAAAGAGGAT-ATTGTCAGTGTGATGtcagagtcc--------------------ca-------------------gtctgctcat------ctgtagaatagagtaat-------------------------------tggactaactaatgc------------------------------aaaaccctttcaggactaaaactgtgt--gaACTCCTGGTTGATAGTACTAGAAACTTGGCTAGAAATGTAATCAGGTTTTATATACACTAGTAATTATCCTGAAAATATATTAAAACCTGAAAGTTA-CTACATAA-TTttttctctctttttct---tccttctgcatttgtcttatctttccttttcctttCTTTGCTATGGCAATTA-TTTTATCTTATTCTGTTAAAttttctatcacaaaagttacatgc-tgtaggtaataaattcagaaag--cactgaaaggtataaagtcaagact--aaaa
s panTro5.chr6             30351043 435 + 175400573 TTGCTTTTCTGTGTA---------TATTTTGAGGCTG---AT------GTTTCCATGCATTAATGTGAGTCTGTCTAAAAGAGGAT-ATTGTCAGTGTGATGtcagagtcc--------------------ca-------------------gtctgctcat------ctgtagaatagagtaat-------------------------------tggactaactaatgc------------------------------aaaaccctttcaggactaaaactgtgt--gaACTCCTGGTTGATAGTACTAGAAACTTGGCTAGAAATGTAATCAGGTTTTATATACACTAGTAATTATCCTGCAAATATATTAAAACCTGAAAGTTA-CTACATAA-TTttttctctctttttct---tccttctgcatttgtcttatctttccttttcctttCTTTGCTATGGCAATTA-TTTTATCTTATTCTGTTAAAttttctatcacaaaagttacatgc-tgtaggtaataaattcagaaaa--cactgaaaggtataaagtcaagact--aaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30585389 435 + 173848474 TTGCTTTTCTGTGTA---------TATTTTGAGGCTG---AT------GTTTCCATGCATTAATGTGAGTCTGTCTAAAAGAGGAT-ATTGTCAGTGTGATGtcagagtcc--------------------ca-------------------gtctgctcat------ctgtagaatagagtaat-------------------------------tggactaactaatgc------------------------------aaaaccctttcaggactaaaactgtgt--gaACTCCTGGTTGATAGTACTAGAAACTTGGCTAGAAATGTAATCAGGTTTTATATACACTAGTAATTATCCTGCAAATATATTAAAACCTGAAAGTTA-CTACATAA-TTttttctctctttttct---tccttctgcatttgtcttatctttccttttcctttCTTTGCTATGGCAATTA-TTTTATCTTATTCTGTTAAATtttctatcacaaaagttacatgc-tgtaggtaataaattcagaaaa--cactgaaaggtataaagtcaagact--aaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     292457 437 +   2037526 TTGCTTTTCTGTGTA---------TATTTTAAGGCTG---AT------GTTTCCATGCATTAATGTGAGTCTGTCTAAAAGAGGAT-ATTGTCAGTGTGATGtcagagtcc--------------------ca-------------------gtctgctcat------ctgtagaatagagtaat-------------------------------tggactaactaatgc------------------------------aaaaccctttcaggactaaaactgtgt--gaACTCCTGGTTGATAGTACTAGAAACTTGGCTAGAAATGTAATCAGGTTTTATATACACTAGTAATTATCCTGCAAATATATTAAAACCTGAAAGTTA-CTACATAA-TTttttctctctttctct---tccttctgcatttgtcttatctttccttttcctttctttgctATGGCAATTA-TTTTATCTTATTCTGTTAAATTTTGTAtcacaaaagttacatgc-tgtaggtaataaattcagaaag--cactgaaaggtataaagtcaagactaaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74959238 436 + 122973662 TTGCTTTTCTGTGTA---------TATTTTGAGGCTG---AT------GTTTCCATGCATTAATGTGAGTCTGTCTAAAAGAGGATAATTGTCAGTGTGATGtcagagtcc--------------------ca-------------------gtctgctcat------ctgtagaatggagtaat-------------------------------tggactaactaatgc------------------------------aaaaccctttcaggactaagattgtgt--gaattcctggttGATAGTACTAGAAACTTGGCTAGAAACGTAATCAGGTTTTATATACACTAGTAATTATCCTGCAAATATATTAAAACCTGAAAGTTA-CTACATAA-TTttttctctctttctcc---tccttctgcatttgtcttttctttccttttcctttCTTTGCTATGGCAATTA-TTTTATCTTATTCTGTTAAAttttctatcataaaaattacatgc-tgtaggcaataaattcagaaag--cactgaaaggtacaaagtcaagact--aaaa
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30837534 433 + 172585720 TTGC--TTCTGTGTA---------TATTTTGAGGCTG---AT------GTTTCAGTGCGTTAACGTGAGTCTGTCTAAAAGAGGAT-ACTGTCACTGTGATGtcagagtct--------------------ca-------------------gtctgctcat------ctgtagaatggagtaat-------------------------------tgcactaactaatgc------------------------------aaaaccctttcaggactaagactgtgt--gaATTCCTGGTTGATAGTACTAGAAACTTGGCTAGAAATGTAATCAGGTTTTATACAAACTAGTAATTATCCTGCAAATACATTAAAACTTGAAAGTTA-GTACATAAtttttttctctctttctct---tccttctgcatttgtctt-tcttcccttttcctttctttGCTATGGCAATTA-TTTTATCTTATTCTGTTAAATTTTCTATCATAAAAGTTACCTGC-TGTAGGTAATACATTCAGAAAG--CACTGAAATGTATAAAGTCAAGACT--AAAA
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30127016 433 - 170955103 TTGC--TTCTGTGTA---------TATTTTGAGGCTG---AT------GTTTCAGTGCGTTAACGTGAGTCTGTCTAAAAGAGGAT-ACTGTCACCGTGATGtcagagtct--------------------ca-------------------gtctgctcat------ctatagaatggagtaat-------------------------------tgcactaactaatgc------------------------------aaaaccctttcaggactaagactgtgt--gaATTCCTGGTTGATAGTACTAGAAACTTGGCTAGAAATGTAATCAGGTTTTATATAAACTAGTAATTATCCTGCAAATATATTAAAACCTGAAAGTTA-GTACATAAtttttttctctctttctct---tccttctgcatttgtctt-tcttcccttttcctttctttGCTATGGCAATTA-TTTTATCTTATTCTGTTAAATTTTCTATCATAAAAGTTACCTGC-TGTAGGTAATACATTCAGAAAG--CACTGAAAGGTATAAAGTCAAGACT--AAAA
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     375938 433 +   1495729 TTGC--TTCTGTGTA---------TATTTTGAGGCTG---AT------GTTTCAGTGCGTTAACGTGAGTCTGTCTAAAAGAGGAT-ACTGTCACCGTGATGtcagagtct--------------------ca-------------------gtctgctcat------ctatagaatggagtaat-------------------------------tgcactaactaatgc------------------------------aaaaccctttcaggactaagactgtgt--gaATTCCTGGTTGATAGTACTAGAAACTTGGCTAGAAATGTAATCAGGTTTTATACAAACTAGTAATTATCCTGCAAATACATTAAAACTTGAAAGTTA-GTACATAAtttttttctctctttctct---tccttctgcatttgtctt-tcttcccttttcctttctttGCTATGGCAATTA-TTTTATCTTATTCTGTTAAATTTTCTATCATAAAAGTTACCTGC-TGTAGGTAATACATTCAGAAAG--CACTGAAAGGTATAAAGTCAAGACT--AAAA
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     477971 433 -    863181 TTGC--TTCTGTGTA---------TATTTTGAGGCTG---AT------GTTTCAGTGTGTTAACGTGAGTCTGTCTAAAAGAGGAT-ACTGTCACTGTGATGtcagagtct--------------------ca-------------------gtctgctcat------ctgtagaatggagtaat-------------------------------tgcactaactaatgc------------------------------aaaaccctttcaggactaagactgtgt--gaATTCCTGGTTGATAGTACTAGAAACTTGGCTAGAAATGTAATCAGGTTTTATATAAACTAGTAATTATCCTGCAAATATATTAAAACCTGAAAGTTA-GTACATAAtttttttctctctttctct---tacttctgcatttgtctt-tcttcccttttcctttctttGCTATGGCAATTA-TTTTATCTTATTCTGTTAAATTTTCCATCATAAAAGTTACCTGC-TGTAGGTAATACATTCAGAAAG--CACTGAAAGGTATAATGTCAAGACT--AAAA
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29627669 433 -  71996105 TTGC--TTCTGTGTA---------TATTTTGAGGCTG---CT------GTTTCAGTGCGTTAACGTGAGTCTGTCTAAAAGAGGAT-ACTGTCACTGTGATGTCAGAGTCC--------------------CC-------------------GTCTGCTCAT------CTGTAGAATGGAGTAAT-------------------------------TGCACTAACTAATGC------------------------------AAAACCCTTTCAGGACTAAGACTGTGT--GAATTCCTGGTTGATAGTACTAGAAACTTGGCTAGAAACGTAATCAGGTTTTATATAAACTAGTAATTATCCTGCAAATATATTAAAACCTGAAAGTTA-GTACATAAtttttttctctctttctct---tccttctgcatttgtctt-tcttcccttttcctttctttGCTATGGCAATTA-TTTTATCTTATTCTGTTAAATTTTCTATCATAAAAGTTACATGA-TGTAGGTAATACATTCAGAAAG--CACTGAAAGGTATAAAGTCAAGACT--AAAA
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1     346240 433 -    735854 TTGC--TTCTGTGTA---------TATTTTGAGGCTG---AT------GTTTCAGTGCGTTAACGTGAGTCTGTCTAAAAGAGGAT-ACTGTCACTGTGATGtcagagtct--------------------ca-------------------gtctgctcat------ctgtagaatggagtaat-------------------------------tgcactaactaatgc------------------------------aaaaccctttcaggactaagactgtgt--gaATTCCTGGTTGATAGTACTAGAAACTTGGCTAGAAATGTAATCAGGTTTTATATAAACTAGTAATTATCCTGCAAATATATTAAAACCTGAAAGTTA-GTACATAAtttttttctctctttctct---tacttctgcatttgtctt-tcttcccttttcctttctttGCTATGGCAATTA-TTTTATCTTATTCTGTTAAATTTTCCATCATAAAAGTTACCTGC-TGTAGGTAATACATTCAGAAAG--CACTGAAAGGTATAAAGTCAAGACT--AAAA
i manLeu1.NW_012107142v1   I 4927 C 0
s colAng1.NW_012115577v1     265258 432 -   1829203 TTGC--TTCTGTGTA---------TATTTTGAGGCTG---AT------GTTTCAGTGTGTTAATGTGAGTCTGTCTAAAAGAGGAT-ACTGTCACTGTGATGtcagagtcc--------------------ca-------------------gtctgctcat------ctgtagaatggagcaat-------------------------------tgcactaactaatgc------------------------------aaaaccctttcaggactaagactgtgt--gaATTCCTGGTTGATAGTCCTAGAAACTTGGCTAGAAATGTAATCAGGTTTTATATAAACTAGTAATTATCCTGCAAATATATTAAAACCTGAAAGTTA-GTACATAA-TTTTTTCTCTTTTTCTCT---TCCTTCTGCATTTGTCTT-TCTTCCCTTTTCCTTTCTTTGCTATGGCAATTG-TTTTATCTTATTCTGTTAAATTTTCTATCATAAAAGTTACCTGC-TGtaggtaatacattcagaaag--cactgaaaggtataaagtcaagact--aaaa
i colAng1.NW_012115577v1   I 1 C 0
s calJac3.chr4             30459947 424 + 171630274 TTGCTTTTCTGTGTA---------TATTTTGAGGCTG---AC------GTTCCAAAGCATGAATGTGAGTCTGTCTAAAAGAGAAT-ACTGTCACTGTGATGtcagggtcc--------------------ca-------------------atatgctcat------ctgtagaatgaagtaat-------------------------------tggactaattaatgc-------------------------------aaacactttcaggact--gacTGTGT--GAATTCCTGGTTGAGAATACTGGAAACCGGACTAGAAATGTAATCAGGTTTTATATACACTAGTAATTATCCTGAAAATATATTAAAACCTAAA----A-GTACATAA-Ttt----tttctttctct---tccttctgcatttgtcttttctttccttttcctttgtttgctATGGTAATTATTTTTATCTTATTCTGTTAAAttttctatgacaaaagttacatgc-tgtagataataaattcagaaag--cactg-aaggtataaagtcaagact--aaaa
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           271543 436 +    515838 TTGCTTTTCTGCGCA---------TATTTTGAGGCTG---AT------GTTCCAATGCATCAATGTGAGTCTGTCTAAAAGAGAAC-ACTGTCACTGTGATGtcagggtcc--------------------ca-------------------atatgctcat------ctgcagaatgaagcaat-------------------------------tggactaactaacgc------------------------------gaaaccctttcagGACTAAGACTGTGG--GGATTCCTGCTTGAGAATACTGGAAACTGGACCAGAAATGTAATCAGGTTTTATATACACTGGTAATTATCCTGCCGATACATTAAAACCTGAAAGTTA-GTACATAA-ttttttctttctttctct---tccttccgcatttgccttttctttccttttcctttctttGCCATGGTAATTATTTTTATCTTATTCCGTTAAATTTTCTATCACCAAGGTtacatgc-tctagctaataaattcagaaag--cccggaaaggtataaaatcaagact--aaaa
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     900871 438 -   1771730 TTGCTTTTCTGTGTA---------TATTTGGAGGCTG---AT------GTTCCAGTGCATTAATGTGAGTCTGTCTAAAAGAGAAC-ACTGTCCCTGTGATGtcagggtcc--------------------ca-------------------atatgctcat------ctgtagaatgaagtaat-------------------------------tggactaaccaatgc------------------------------aaaaccctttcaggactaagactgtgt--gaattcctggttGATAATACTAGAAACTTGGCCAGAAATGTAATCA-GTTTTATATACACTAGTAATTATCCTGCCGATATATTAAAACCTGAAAGTTA-GTACGTAA-TTTTTTCTCTCTTTCTCTAGAGACTTCTGCATttgtcttttctttccttttcctttctttgctATGGTAATTATTTTTATCTTATTCTGTTAAATTTTCTGTGacaaaagttgcatgc-tctagataataaattcagaaag--cactgaaaggtatgaagtcaaggct--aaaa
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496901v1      76392 436 -    486031 TTGCTTTTCTGTGTA---------TATTTTGAGGCTG---AT------GTTCCAATACATTAATGTGAGTCTGTCTAAAAGAGAAC-ACTGTCACTGTGACGtcagggtcc--------------------ca-------------------atatgctcat------ctgtagaatgaagtaat-------------------------------tgtactaactaatGC------------------------------AAAACGCTTTCAGGACTAAGACTGTGT--GAATTCCTGGTTGATAATACTAGAAACTTGGCTAGAAATGTAATCAGGTTTTATATACACTAGTAATTATCCTGCCGGTATATTAAAACCTGAAAGTTA-GTACATAA-TTttttctctctttctct---tccttttgcatttgtcttttctttccttttcctttCTTTGCTATGGTAATTATTTTTATCTTATTTCATTAAATtttctatgacaaaagttacgtgc-tctagataataaattcaaaaag--cactgaaaggtataaagtcaagact--aaaa
i aotNan1.NW_018496901v1   I 1 C 0
s otoGar3.GL873550           310635 431 +  18854210 CTGCTTTTCTGTGTA---------TATTTTGCTACTG---ACGTT--AGTTTCAGTGCATCACTGTGAGTCTGTCTAAAAGAGGAT-ACTGTCACTGTGGTGTCAGAGCTCCAGGAAGCATAGGCCACTGTCA-------------------GTCTGCTCAT------CTGGATAATGCAG-------------------------------------------ATAATGT------------------------------TCAACTCTTTTAGCACTCAGACTATTT--GGCTCCCTGGTTGATAATACTAGAAACTTGGCTAGAAATGTAATCAGATTTTACACACACTAGTAATTCTCCTGTAAATATATTGAAACCTGGAAATTACCTGCGTGA-------------TTCTCT---TTTTCCTACGTTTGTCTTTTCTTTCCTTTTCCTTTTTTT-CTATAATACT---TTTAATCTTATTTTGTTAGGTGTT-TATTACAAAAGTTATGTAT-TTTTAGTAATAAATTCAGTAA---CCCTGaaaggtataaagtcaaaact--aaac
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58098537 499 -  94987271 TTGCTTTTCTGTGTGCCTCTCTGCTACTATCAGGGTTTCCAG------GTCTCCGTGTATCGATGTAGGT-------------GAT-CCTGCTACTATGATGGTGAAGACC--------------------CAGGAAGTATGGGCCACTGT-GTTTACTCTTGCTGTACTAGATAATGTATTAGTTCATGAGATGCTGTGCTGGATAATGAGAGGCTGTATTACATAATGTACAAGTTAATGAGATGTTGTACTAGAAATGAGAACCACTTCTTGACTAAGATTATATTGGGTTCCCTGGTGGATGGTCCTAGAAGCTAGTCTAGACATGTCATCAAGTTTTATCTGTGCTG----TTATCTTGTAAAGAT-TTGAAATCTGAAAACTT-GTACACGA-TGCCCTATTCCCCTCTCC---CCC------------CTT-TCCTTCCTTTCCGGAACACTACTGTTGTT-----TCTTGTGTTATTTATTTATTTTTTTCTAAAAAAACGATTCACGC-CTTTGGTAGTAAATACAGTCGA--TACCAAATGATAAAATATCAAAACT--AAAA
i mm10.chr17               I 1 I 2302
s dasNov3.JH567297            24697 452 +     53444 TTGCTTTTCTGTGTA---------TTTTTTGCCATTG---ATGTCAAAGTTTCAATGCATTTATGTGAGCCTTT---AAAGAGGAT-AATATCTCTCTGATGTCACATTCC--------------------CA-GAAATATGAGTTACTTtcagtttctcat------ctgtagactggggg----------------------------------tggagtagatggtga------------------------------aaaggcctttgagtcctaaggctctat--gg-ctcCTGGTTGATAGTGCTAGGAGTGTTGCTAGAAGTGTGATCAGG-TTTATGTATGCTAACAGTTATCCTGCAAATATGTTGAAGCCTGGAAATTA-GTGCATGG-TTCTCTTTTACTCTTctc---ccttccttcctccattccttcctcccttccttccttTTTATTATGACCAT---TTTCATTCTATTTTATTTAAAAATTTATCATAAACATTCTATGCTTATTGATAATAAATCCAAAAAAATAACTGAAAGGTATGAAGTAAAAATG--AAGA
i dasNov3.JH567297         I 1 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=894950.000000
s hg38.chr6_GL000254v2_alt  1482053 82 +   4827813 acttgtcttcctttctccctccattcatagtcctcagaggtaaccattgtttgatttttgtacatccttccaaaaaa-t-gtgt
s panTro5.chr6             30351478 82 + 175400573 acttgtcttcctttctccctccattcatagtcctcagaggtaaccattgtttgatttttgtacatccttccaaaaaa-t-gtgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30585824 83 + 173848474 acttgtcttcctttctccctccattcatagtcctcagaggtaaccattgtttgatttttgtacatccttccaaaaaa-tagtgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     292894 82 +   2037526 actggtcttcctttctccctccattcatagtcctcagaggtaaccattgtttgatttttgtacatccttccaaaaaa-t-gtgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74959674 82 + 122973662 acttgtcttcctttctccctccattcatagtcctcagaggtaaccactgtttgatttttgtacatccttccaaaaaa-t-gtgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30837967 80 + 172585720 ACTTGTCTTCCTTTCTCCCTCCGTTCATAGTCCTCAGAGGTA--TATTGTTCGATTTTTGTACATCCTTCCAAAAAA-T-GTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30127449 80 - 170955103 ACTTGTCTTCCTTTCTCCCTCCGTTCATAGTCCTCAGAGGTA--TATTGTTCGATTTTTGTACATCCTTCCAAAAAA-T-GTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     376371 80 +   1495729 ACTTGTCTTCCTTTCTCCCTCCGTTCATAGTCCTCAGAGGTA--TATTGTTCGATTTTTGTACATCCTTCCAAAAAA-T-GTGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     478404 80 -    863181 ACTTGTCTTCCTTTCTTCCTCCGTTCATAGTCCTCAGAAGTA--TATTGTTCGATTTTTGTACATCCTTCCAAAAAA-T-GTGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29628102 80 -  71996105 ACTTGTCTTCCTTTCTCCCTCCGTTCATAGTCCTCAGAGGTA--TATTGTTCGATTTTTGTACATCCTTCCAAAAAA-T-GTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     346673 80 -    735854 ACTTGTCTTCCTTTCTCCCTCCGTTCATAGTCCTCAGAAGTA--TATTGTTCGATTTTTGTACATCCTTCCAAAAAA-T-GTGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     265690 82 -   1829203 acttgtcttcctttctccctccattcatagtcctcagaggtaaccattgttcgatttttgtacatccttccaaaaaa-t-gtgt
i colAng1.NW_012115577v1   C 0 I 46
s calJac3.chr4             30460371 78 + 171630274 atttgtcttcctttctccctccattcacagtcctcagaggtaaccattctcagatttttgtacatccttccaaaaaa------t
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           271979 83 +    515838 atttgtcttcctttctcccaccattcacagtcctcagaggtaaccattgtcagatttttgtacatccttccaaaaaaat-gtga
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     901309 78 -   1771730 atttgtcttcctttctccctccattcacagtcctcagaggtaaccattgtcagatttttgtacatccttccaaaaaa------t
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      76828 82 -    486031 atttgtcttcctttctccctccattcacagtcctcagaggtaaccattGTCAGATTTTTGTACATCCTTCCAAAAAA-T-GTGA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           311066 82 +  18854210 atctttcttcctctctccttccattctcagtcc-cagaggtagccattgttagatttttgtgtatccttccagaaaa-ttgtgt
i otoGar3.GL873550         C 0 I 6
s dasNov3.JH567297            25149 73 +     53444 ATCTTTCTCCCTGCCTCCCTCCATTCTCAGTTTCTAGGGGTA---ATT------TTTTTGTGTATCCTTCCAGAAAA-T-ATTT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58099036 2302 -  94987271 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=112787.000000
s hg38.chr6_GL000254v2_alt  1482135 21 +   4827813 gtgcttatgaatgcactctt----------------a
s panTro5.chr6             30351560 23 + 175400573 gtgcttatgaatgcactctt--------------aca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30585907 25 + 173848474 gtgcttatgaatgcactctt------------acaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     292976 26 +   2037526 gtgcttatg-atgcactctt----------acacaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74959756 37 + 122973662 gtgtttatgaatgcactcttacacacacacacacaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30838047 19 + 172585720 ----TTGTGAATGCACTCTT--------------ACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30127529 19 - 170955103 ----TTGTGAATGCACTCTT--------------ACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     376451 19 +   1495729 ----TTGTGAATGCACTCTT--------------ACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     478484 19 -    863181 ----TTGTGAATGCACTCTT--------------ACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29628182 19 -  71996105 ----TTGTGAATGCACTCTT--------------ACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     346753 19 -    735854 ----TTGTGAATGCACTCTT--------------ACA
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30460449 21 + 171630274 gtgtttataaatgcactctt--------------a--
i calJac3.chr4             C 0 I 3
s saiBol1.JH378341           272062 21 +    515838 gtgtttataaatgcactgtt--------------a--
i saiBol1.JH378341         C 0 I 13
s cebCap1.NW_016107755v1     901387 21 -   1771730 gtgtttatgaatgcactctt--------------a--
i cebCap1.NW_016107755v1   C 0 I 3
s aotNan1.NW_018496901v1      76910 21 -    486031 GTGTTTATAAATGCACTCTT--------------A--
i aotNan1.NW_018496901v1   C 0 I 773
s otoGar3.GL873550           311154 22 +  18854210 gtgtgtgtgaatccactctt--------------aa-
i otoGar3.GL873550         I 6 C 0
s dasNov3.JH567297            25222 12 +     53444 --------GTATACACTCTA-----------------
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58099036 2302 -  94987271 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e colAng1.NW_012115577v1     265772 46 -   1829203 I

a score=34720.000000
s hg38.chr6_GL000254v2_alt  1482156 19 +   4827813 --------cacaca--cccacaca----------caccc
s panTro5.chr6             30351583 19 + 175400573 --------cacaca--cacacaca----------caccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30585932 19 + 173848474 --------cacaca--cacacaca----------caccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     293002 19 +   2037526 --------cacaca--cacacaca----------caccc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74959793 19 + 122973662 --------cacaca--cacacaca----------caccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30838066 27 + 172585720 --------CACACG--CGCGCGCG--TGCGCTCTCTCTC
i rheMac8.chr4             C 0 I 6
s macFas5.chr4             30127548 27 - 170955103 --------CACACA--CGCGCGCG--CGCGCGCTCTCTC
i macFas5.chr4             C 0 I 6
s macNem1.NW_012012100v1     376470 29 +   1495729 --------CACACAcgcgcgcgcg--cgcgcgcTCTCTC
i macNem1.NW_012012100v1   C 0 I 6
s cerAty1.NW_012002535v1     478503 17 -    863181 --------CACACG--CGCGCG------------CTCTC
i cerAty1.NW_012002535v1   C 0 I 6
s chlSab2.chr17            29628201 19 -  71996105 --------CACACA--CGCGCGCG----------CTCTC
i chlSab2.chr17            C 0 I 6
s manLeu1.NW_012107142v1     346772 29 -    735854 --------CACACG--CGCGCGCGCGTGCGCTCTCTCTC
i manLeu1.NW_012107142v1   C 0 I 6
s calJac3.chr4             30460473 27 + 171630274 --------cacacg--cacacaca--cacatgcacacac
i calJac3.chr4             I 3 C 0
s saiBol1.JH378341           272096 27 +    515838 --------cacaca--cacacaca--cacacgcacatac
i saiBol1.JH378341         I 13 C 0
s cebCap1.NW_016107755v1     901411 27 -   1771730 --------cacacg--cacacaca--cacatgcacacac
i cebCap1.NW_016107755v1   I 3 C 0
s otoGar3.GL873550           311176 12 +  18854210 --------aaaaaa--actaca-----------------
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            25234 16 +     53444 GGAAAAATAAAACA--CA---------------------
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58099036 2302 -  94987271 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e aotNan1.NW_018496901v1      76931 773 -    486031 I
e colAng1.NW_012115577v1     265772 46 -   1829203 I

a score=1615830.000000
s hg38.chr6_GL000254v2_alt  1482175 159 +   4827813 tcaaaggattctctctata--tttttttctgtaactcatttttgttatctaaaagtgtggcttgaacattttct-------ca--------tcagcatgtatagatcttctgaattattttcaagaactgtgtggtattaaattctatgaatgtaccataaattggcagactttgg-
s panTro5.chr6             30351602 159 + 175400573 tcaaaggattctctctata--tttttttctgtaactcatttttgttatctaaaagtatggcttgaacattttct-------ca--------tcagcatgtatagatcttctgaattattttcaacaactgtgtggtattaaattctatgaatgtaccataaattggcagacattgg-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30585951 159 + 173848474 tcaaaggattctctctcta--tttttttctgtaactcatttttgttatctaaaagtatggcttgaacattttct-------ca--------tcagcatgtatagatcttctgaattattttcaacaactgtgtggtattaaattctatgaatgtaccataaattggcagacattgg-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     293021 159 +   2037526 tcaaaggattctctctata--tttttttctgtaactcatttttgttatctaaaagtatggcttgaacattttct-------ca--------tcagcatgtatagatcttctgaattattttcaacaactgtgtggtattaaattctatgaatgtaccataaattggcagacattgg-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74959812 159 + 122973662 tgaaaggattctctctgta--tttttttctgtaactcatttttgttatctaaaagtatggcttggacattttct-------ca--------tcagcatgtatagatcttctgaatgattttcaacaactgtgtggtattaaattctatgaatgtaccataaattggcagacattgg-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30838099 160 + 172585720 TCAAAGGATTCTCTCTGTAT-TTTttttctgtaacccatttttattatctaaaagtatggcttgaacattttct-------ca--------tcagcatgtataaatcttctgaattattttcaacaactgtgtggtattgaattctatgaatgtaccataaattggtagacattgg-
i rheMac8.chr4             I 6 C 0
s macFas5.chr4             30127581 160 - 170955103 TCAAAGGATTCTCTCTGTAT-TTTTTttctgtaacccatttttattatctaaaagtatggcttgaacattttct-------ca--------tcagcatgtatagatcttctgaattattttcaacaactgtgtggtattgaattctatgaatgtaccataaattggtagacattgg-
i macFas5.chr4             I 6 C 0
s macNem1.NW_012012100v1     376505 160 +   1495729 TCAAAGGATTCTCTCTGTAT-TTTTTttctgtaacccatttttattatctaaaagtatggcttgaacattttct-------ca--------tcagcatgtataaatcttctgaattattttcaacaactgtgtggtattgaattctatgaatgtaccataaattggtagacattgg-
i macNem1.NW_012012100v1   I 6 I 295
s cerAty1.NW_012002535v1     478526 160 -    863181 TCAAAGGATTCTCTCTGTAT-TTTTTttctgtaacccatttttattatctaaaagtatggcttgaatattttct-------ca--------tcagcatgtatagatcttctgaattattttcaacaactgtgtggtattgaattctatgaatgtaccataaattggtagacattgg-
i cerAty1.NW_012002535v1   I 6 C 0
s chlSab2.chr17            29628226 160 -  71996105 TCAAAGGATTCTCTCTGTAT-TTTTTttctgtaacccatttttattatctaaaagtatgacttgaacattttct-------ca--------tcagcatatatagatcttctgaattattttcaacaactgtgtgatattgaattctatgaatgtaccataaattggtagacattgg-
i chlSab2.chr17            I 6 C 0
s manLeu1.NW_012107142v1     346807 160 -    735854 TCAAAGGATTCTCTCTGTAT-TTTttttctgtaacccatttttattatctaaaagtatggcttgaacattttct-------ca--------tcagcatgtataaatcttctgaattattttcaacaactgtgtggtattgaattctatgaatgtaccataaattggtagacattgg-
i manLeu1.NW_012107142v1   I 6 C 0
s colAng1.NW_012115577v1     265818 161 -   1829203 tcaaaggattctctctgtatatttttttctgtaactcatttttattatctaaaagtatggcttgaacattttct-------ca--------tcagcatgtatagatcttctgaattattttcaacaactgtgtggtattgaattctatgaatgtaccataaattggtagacattgg-
i colAng1.NW_012115577v1   I 46 C 0
s calJac3.chr4             30460500 155 + 171630274 tcaaaggattctcta------tttttttctgtaactcactttcactatctaaaagtgtgtcttggacattttcc-------ca--------tcagcatgtatagatcttctgaattctttccaacaactgtgtggtattgaattctatgaatgtaccgtaaatttgcagacactgg-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           272123 152 +    515838 tcaaaggattctcta------tttttttctgtaactcactttcattatctgaaagtatg---cggacattttcc-------ca--------tcagcatgtatagatcttctgaattcttttcaacaactgtgtgatattgaattctatgaatgtaccataaattggcagacactgg-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     901438 155 -   1771730 tcaaaggattctttt------tttttttctgtaactcactttcattatccaaaagtatgtcttggacattttcc-------ca--------tcagcatgtatagatcttctgaattcttttcaacaactgtgtggtactgaattctatgaatgtaccataAATTGGCAGACACTGG-
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           311188 163 +  18854210 -caaaaaattacctctatg--tttttttctgtaacttatttttatcatctaaaaatat--cttggccatgttctcactttcca--------tcagtatgtttagatctcttgaattcttttccacaactgcctgatactgaagtgtatgaatatgccatgaattggcaaacattgc-
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            25250 158 +     53444 --GAAGGAGTC----------TCTTTttctgcacctcatttttagcatctaaaaaagtgtcttggacatttttc-------catttgtccttcagtacttatagatctactaaattctttccaacaactgcaaggtatacaattctgtgaatgtatcacaagttggcagacatttgt
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58099036 2302 -  94987271 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e aotNan1.NW_018496901v1      76931 773 -    486031 I

a score=23374.000000
s hg38.chr6_GL000254v2_alt  1482334 3 +   4827813 gtc
s panTro5.chr6             30351761 3 + 175400573 gtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30586110 3 + 173848474 gtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     293180 3 +   2037526 gtt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74959971 3 + 122973662 gtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30838259 3 + 172585720 att
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30127741 3 - 170955103 att
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     478686 3 -    863181 att
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29628386 3 -  71996105 att
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     346967 3 -    735854 att
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     265979 3 -   1829203 att
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30460655 3 + 171630274 gtt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           272275 3 +    515838 gtt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     901593 3 -   1771730 ATT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           311351 3 +  18854210 att
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            25408 3 +     53444 gtt
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58099036 2302 -  94987271 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e aotNan1.NW_018496901v1      76931 773 -    486031 I
e macNem1.NW_012012100v1     376665 295 +   1495729 I

a score=252477.000000
s hg38.chr6_GL000254v2_alt  1482337 27 +   4827813 atttccaagctattgtt---ttgttttaag----
s panTro5.chr6             30351764 27 + 175400573 atttccaagctattgtt---ttgttttaag----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30586113 27 + 173848474 atttccaagctattgtt---ttgttttaag----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     293183 27 +   2037526 atttccaagctattgtt---ttgttttaag----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74959974 27 + 122973662 atttccaagctattgtt---ttgttttaag----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30838262 27 + 172585720 attttcaagctattgtt---ttgttttagg----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30127744 27 - 170955103 attttcaagctattgtt---ttgttttagg----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     376960 27 +   1495729 attttcaagctattgtt---ttgttttagg----
i macNem1.NW_012012100v1   I 295 C 0
s cerAty1.NW_012002535v1     478689 27 -    863181 attttcaagctattgtt---ttgttttagg----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29628389 27 -  71996105 attttcaagctattgtt---ttgttttagg----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     346970 27 -    735854 attttcaagctattgtt---ttgttttagg----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     265982 27 -   1829203 attttcaagctattgtt---tcgttttagg----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30460658 30 + 171630274 atttccaagctattgttggatttatttaag----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           272278 27 +    515838 atttccaaactattgtt---ttgttttaag----
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     901596 27 -   1771730 ATCTCCAAGCTATTGTT---TTGTTTTAAG----
i cebCap1.NW_016107755v1   C 0 I 310
s otoGar3.GL873550           311354 27 +  18854210 -attccaggctattgggg--tctttttaag----
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            25411 31 +     53444 gtttccaggttatggct---ttgttttgttttgt
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58099036 2302 -  94987271 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e aotNan1.NW_018496901v1      76931 773 -    486031 I

a score=75033.000000
s hg38.chr6_GL000254v2_alt  1482364 6 +   4827813 attaca
s panTro5.chr6             30351791 6 + 175400573 attaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30586140 6 + 173848474 attaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     293210 6 +   2037526 attaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74960001 6 + 122973662 attaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30838289 6 + 172585720 attaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30127771 6 - 170955103 attaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     376987 6 +   1495729 attaca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     478716 6 -    863181 attaca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29628416 6 -  71996105 attaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     346997 6 -    735854 attaca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     266009 6 -   1829203 gttaca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30460688 6 + 171630274 attaca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           272305 6 +    515838 attaca
i saiBol1.JH378341         C 0 I 313
s cebCap1.NW_016107755v1     901933 6 -   1771730 aTTACA
i cebCap1.NW_016107755v1   I 310 C 0
s aotNan1.NW_018496901v1      77704 6 -    486031 aTTACA
i aotNan1.NW_018496901v1   I 773 C 0
s otoGar3.GL873550           311381 6 +  18854210 attaca
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            25442 6 +     53444 tttgta
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58099036 2302 -  94987271 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=91902.000000
s hg38.chr6_GL000254v2_alt  1482370 7 +   4827813 cagaatg
s panTro5.chr6             30351797 7 + 175400573 cagaatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30586146 7 + 173848474 cagaatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     293216 7 +   2037526 cagaatg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74960007 7 + 122973662 cagaatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30838295 7 + 172585720 cagaatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30127777 7 - 170955103 cagaatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     376993 7 +   1495729 cagaatg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     478722 7 -    863181 cagaatg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29628422 7 -  71996105 cagaatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     347003 7 -    735854 cagaatg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     266015 7 -   1829203 cagaatt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30460694 7 + 171630274 cagaatg
i calJac3.chr4             C 0 I 4153
s saiBol1.JH378341           272624 7 +    515838 cagaatg
i saiBol1.JH378341         I 313 C 0
s cebCap1.NW_016107755v1     901939 7 -   1771730 CAGAATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      77710 7 -    486031 CAGAATG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           311387 7 +  18854210 cacaatg
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            25448 7 +     53444 tagaatg
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58099036 2302 -  94987271 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=3407993.000000
s hg38.chr6_GL000254v2_alt  1482377 345 +   4827813 ttctaatgaatatccttcaacatatatattGGAGGACCTAGA--------------------------------------------------------------------------ATATCCA-------AGATATattttggtgagagcataagg-tagaaatctaactttagtttttccaagtta-taatcaatttgt----cctatcaccatttattgaatgattcatatagttt-c-cccattgatttgaatgccaatgtcataatataccatatatgcatattttcttgcatactgccttgattctttatgctgttctattctgtctatgcttgcctataagccaaggtattttagagattttatccttaccatatattttaatgtcaggtattttgatagaatcctcacaatactcttatttttcaga
s panTro5.chr6             30351804 345 + 175400573 ttctaatgaatatccttcaacatatatATTGGAGGACCTAGA--------------------------------------------------------------------------ATACCCA-------AGATATattttggtgagagcataagg-tagaaatctaactttagtttttccaagtta-taatcaatttgt----cctatcaccatttattgaatgattcatatagttt-c-cccattgatttgaatgccaatgtcataatacatcatatatgcatattttcttgcatattgccttaattctttgtgctgttctattctgtctatgcttgcctataagccaagatattttagagattttatccttaccatatattttaatgtcaggtattttgatagaatcctcacaatattcttatttttcaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30586153 345 + 173848474 ttctaatgaatatcctttaacatatatATTGGAGGACCTAGA--------------------------------------------------------------------------ATACCCA-------AGATATattttggtgagagcataagg-tagaaatctaactttagtttttccaagtta-taatcaatttgt----cctatcaccatttattgaatgattcatatagttt-c-cccattgatttgaatgccaatgtcataatacatcatatatgcatattttcttgcatattgccttaattctttgtgctgttctattctgtctatgcttgcctataagccaagatattttagagattttatccttaccatatattttaatgtcaggtattttgatagaatcctcacaatattcttatttttcaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     293223 346 +   2037526 ttctaatgaatatccttcaacatatatATTGGAGGACCTAGA--------------------------------------------------------------------------ATATCCA-------AGATATATTTTGGTGAGAGCAtaagg-tagaaatctaactttagtttttccaagtta-taatcaatttgt----cctatcaccatttgttgaatgattcatatagtttcc-cccattgaTTTGAATGCCAATGTCATAATACACCATATATGCATATTTTCTTGCATATTGCCTTGATTCTTTGTGCTGTTCTATTCTGTCTACGCTTGCCTATAAGCCAAGGTATTTTAGAGATTTTGTCCTTACCATATATTTTAATGTCAGGTATTTTGATAGAATCCTCACAATACTCTTATTTTTCAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74960014 345 + 122973662 ttctaatgaatatccttcaacatatgtATTGCAGGACCTAGA--------------------------------------------------------------------------ATATCCA-------AGATATattttggtgagagcataagg-tagaaatctaacttcagtttttccaagtta-taatcaatttgt----cctatcaccatttattgaatgattcatatagttt-c-cccactgatttgaatgccaatgtcataatacaccatatatgcatattttcttgcatatttccttgattctctgttctgttctactctgtctatgcttgcctataagccaaggtattttagagatttcatccttaccatatattttagtgtcaggtattttgatagaatcctcacaatactcttacttttcaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30838302 345 + 172585720 ttctaatgaatatccttCAACAGATATATAGGAGGACCTAGA--------------------------------------------------------------------------ATATCCA-------AGATATattttggtgaaagcataagg-tagaaatctaactttagtttttccaagtta-taatcaatttgt----ccgatcaccatttattgaatgattcatatagttt-c-cccattgatttgaatgccaatgtcataatataccatatatgcatattttcttgcatatttccttgattctctgttctgttctattctgtttatgcttgcctataagccaaggtattttagatattttatctttaccatatatttcaatgtcaggtattttgatagaatcctcacaatactcttatttttcaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30127784 345 - 170955103 ttctaatgaatatccttCAACAGATATATAGGAGGACCTAGA--------------------------------------------------------------------------ATATCCA-------AGATATattttggtgaaagcataagg-tagaaatctaactttagtttttccaagtta-taatcaatttgt----ccgatcaccatttattgaatgattcatatagttt-c-cccattgatttgaatgccaatgtcataatataccatatatgcatattttcttgcatatttccttgattctctgttctgttctattctgtttatgcttgcctataagccaaggtattttagatattttatctttaccatatatttcaatgtcaggtattttgatagaatcctcacaatactcttatttttcaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     377000 345 +   1495729 ttctaatgaatatccttCAACAGATATATAGGAGGACCTAGA--------------------------------------------------------------------------ATATCCA-------AGATATattttggtgaaagcataagg-tagaaatctaactttagtttttccaagtta-taatcaatttgt----ccgatcaccatttattgaatgattcatatagttt-c-cccattgatttgaatgccaatgtcataatataccatatatgcatattttcttgcatatttccttgattctctgttctgttctattctgtttatgcttgcctataagccaaggtattttagatattttatctttaccatatatttcaatgtcaggtattttgatagaatcctcacaatactcttatttttcaga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     478729 345 -    863181 ttctaatgaatatctttCAACAGATATATAGGAGGACCTAGA--------------------------------------------------------------------------ATATCCA-------AGATATAttttggggaaagcataagg-tagaaatctaactttagtttttccaagtta-taatcaatttgt----ccgatcaccatttattgaatgattcatatagttt-c-cccattgatttgaatgccaatgtcataatataccatatatgcatattttcttgcatatttccttgattctctgttctgttctattctgtctatgcttgcctataagccaaggtattttagagattttatctttaccatatatttcaatgtcaggtattttgatagaatcctcacaatactcttatttttcaga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29628429 345 -  71996105 ttctaatgaatatccttCAACAGATATATAGGAGGACCTAGA--------------------------------------------------------------------------ATATCCA-------AGATATattttggtgaaagcgtaagg-tagaaatctaactttagtttttccaagtta-taatcaatttgt----ccgatcaccatttattgaatgattcatatagttt-c-cccattgatttgaatgccaatgtcgtaatataccacatatgcatattttcttgcatatttccttgattctctgttctgttctattctgtctatacttgcctataagccaaggtattttagagattttatctttaccatatatttcaacgtcaggtattttgatagaatcctcacaatactcttatttttcaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     347010 345 -    735854 ttctaatgaatatctttCAACAGATATATAGGAGGACCTAGA--------------------------------------------------------------------------ATATCCA-------AGATATattttggtgaaagcataagg-tagaaatctaactttagtttttccaagtta-taatcaatttgt----ccaatcaccatttattgaatgattcatatagttt-c-cccattgatttgaatgccaatgtcgtaatataccatatatgcatattttcttgcatatttccttgattctctgttctgttctattctgtctatgcttgcctataagccaaggtattttagagattttatctttaccatatatttcaatgtcaggtattttgatagaatcctcacaatactcttatttttcaga
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     266022 345 -   1829203 ttctaatgaatatccttCAACAGATATATAGGAGGACCTAGA--------------------------------------------------------------------------ATATCCA-------AGATATattttggtgaaagcataaga-tagaaatctaactttagtttttccaagtta-taatcaatttgt----cctatcactatttattgaatgattcatatagttt-c-cccattgatttgaatgccaatgtcataatataccatatatgcatattttcttgcatatttccttgatgctctgttctgttctattctgtctatgcttgcctataagccaaggtattttagagattttatctttaccatatatttcaatttcaggtattttgatagaatcctcacagtactcttatttttcaga
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           272631 344 +    515838 ttctaatgaatatccttcaacatatatATTGGAGGAtataga--------------------------------------------------------------------------ctatcca-------agatatatttcagtgatagcataaga-taggagtctaactttagtttttccaagtta-taatc-atttgt----cctatcaccatttattgaatgattcatatagttt-c-cccactgatttcaatgccaatgttataatacaccatatgtgcatattttattgcatattttcttgattctctgttttgttctattctgtctatgcttgtctataagccaaagtattttaggcactttacacatacagtaagttttaatgtcaggtattttgatagaaccctcgcaatactcttatttttcaga
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     901946 340 -   1771730 TTCTAATGAATAACCTTCAACATATATATTGGAGAATATAGA--------------------------------------------------------------------------CTATCCA-------AGAAATatttcagtgatagcattagg-taggagtctaactttagtttttccaagtta-taatc-atttgt----cctatcaccatttattgaatgattcatatagttt-c-cccaccgatttgaatgtcaatgttataatacaccatatgtgcatattttattgcatatttcc----ttctctgttttgttctattctgtctatgcttgtctataagccaaagtattttaggcactttacctttacaatatgttttaatgtcagatattttgatagaaccctcacaatactcttatttttcaga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      77717 342 -    486031 TTCTAATGAATATCCTTCAACATATATATTGGAGGGTATAGA--------------------------------------------------------------------------ATATCCA-------AGATATatttcagtgatagcataagg-taggagtctaactttag-ttttccaagtta-taatc-atttgt----cctatcaccatttattgaatgattcatatagttt-c-cccactgatttgaatgccaatgttataatacaccatatgtgcatattttattccatatttcattgattctctgttttgttctattctgtctatgcttgtctataagccaaagtattttaggcactttatttttacaatatgttttaatgtca-atattttgatagaaccctcacaatactcttatatttcaga
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           311394 345 +  18854210 ttgtaataaacatccttcaacatatatTTTGGAGGACTTAGAT-------------------------------------------------------------------------TTTTCCA-------AGATATattttggtgaaagcataagg-gaggaatttaactttactgtttccacatta-tagtcaatttgtcctacctatcagcatttattaaataatccacatagttt-c-ccttctgatttgggtaccaacttcataatacgccatctattcatgtttgcttgaatattttcttgactctctattttattttattctatttctgct----gatgagtcagatcattttagacattata-atttgcaatatgttttaatgtcagttattgtgatagaatcctcacaatacttttttttttcaga
i otoGar3.GL873550         C 0 I 130
s dasNov3.JH567297            25455 399 +     53444 ctgcaataaacatcttttaacatatattttg-aggactgagatatatatatttTATgtactggggactgaacccaggacctcccatgtaggaggcaggtgctcaagcgcttgagccacatccactcccTGAGCTATACCTTGATGAAGGAGTAAGGAAAGGACTCTAACTCC--TCCTCCTAAGTGACTGGCCAGTTTGT----CCTCTCACAATTTATTGAATAATCC--AGAGTTT-CTCCCACTGATTCAAAAGCCACCTTCATACT-TGCCACACAtgcatattttcttgcatattttcttgACACTTGGCT-------------------CCTGCCTACAAGTCAAAGCACTTTACATGCTGTAGCTTTACAATATGTTTT--TGTCAAATAGGTCT-TAGAACCCTCA-AATACCCTTATA-TTCATA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58099036 2302 -  94987271 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e calJac3.chr4             30460701 4153 + 171630274 I

a score=1105922.000000
s hg38.chr6_GL000254v2_alt  1482722 109 +   4827813 attcgtgcagatatttgtatatc-tttattttgccaattagctttggaattatttttatcaacctttccCCTGACCCCAATCCAGTTAGTATTTGA----CTGGAC----AATTGACA
s panTro5.chr6             30352149 109 + 175400573 atttgtgcagatatttgtatatc-tttattttgccaattagctttggaattatttttatcaacctttccCCTGACCCCAATCCAGTTAGTATTTGA----CTGGAC----AATTGACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30586498 109 + 173848474 atttgtgcagatatttgtatatc-tttattttgccaattagctttggaattatttttatcaacctttccCCTGACCCCAATCCAGTTAGTATTTGA----CTGGAC----AATTGACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     293569 109 +   2037526 ATTCGTGCAGATATTTGTATATC-TTTATTTTGCCAATTAGCTTTGGAATTATTTTTATCAACCTTTCCCCTGACCCCAATCCAGTTAGTATTTGA----CTGGAC----AATTGACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74960359 109 + 122973662 atttgtgcagatatttgtatatc-tttattttgccaattagctttagaattatttttatcaagcttttccCTGACCGCAATCCAGTCAGTATTTGA----CTGGAC----AATTGACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30838647 109 + 172585720 attTGTGCAGATGTTTGTATATC-TTTATTTTGTCAATTAGCTTCAGAATTATTTTTATCAACCTTTCCCCTGACCCCAATCCAGTTAGTATTTGA----CTGGAC----AACTGACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30128129 109 - 170955103 attTGTGCAGATGTTTGTATATC-TTTATTTTGTCAATTAGCTTTAGAATTATTTTTATCAACCTTTCCCCTGACCCCAATCCAGTTAGTATTTGA----CTGGAC----AACTGACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     377345 109 +   1495729 attTGTGCAGATGTTTGTATATC-TTTATTTTGTCAATTAGCTTTAGAATTATTTTTATCAACCTTTCCCCTGACCCCAATCCAGTTAGTATTTGA----CTGGAC----AACTGACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     479074 109 -    863181 attTGTGCAGATGTTTGTATATC-TTTATTTTGTCAATTAGCTTTAGAATTATTTTTATCAACCTTTCCCCTGACCCCAATCCAGTTAGTATTTGA----CTGGAC----AACTGACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29628774 109 -  71996105 attTGTGCAGATGTTTGTATATC-TTTATTTTGTCAATTAGCTTTAGAATTATTTTTATCAACCTTTTCCCTGACCCCAATCCAGTTAGTATTTGA----CTGGAC----AACTGACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     347355 109 -    735854 attTGTGCAGATGTTTGTATATC-TTTATTTTGTCAATTAGCTTTAGAATTATTTTTATCAACATTTCCCCTGACCCCAATCCAGTTAGTATTTGA----CTGGAC----AACTGACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     266367 109 -   1829203 attTGTGCAGATGTTTGTATATC-TTTATTTTGTCAATTAGCTTTAGAATTATTTTTATCAACCTTTCCCCTAACCCCAATCCAGTTAGTATTTGA----CTGGAC----AACTGACA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           272975 107 +    515838 attTGTGCAGATACTTGTATATC-TTTATTTTGCCAATTAGCTTTAGAAT--TTTTTATCAACCTTTCCCCTGACCCCAATCCAGTTAGAATTTGA----CTGGAC----GATGGACA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     902286 107 -   1771730 attTGTGCAGATACTTGTATATC-TTTATTTTGCCAATTAGTTTTCAAAT--TTTTTATCAACCTTTCCCCTGACCCCAATCCAGTTAGAATTTGA----CTGGAC----GATTGACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      78059 107 -    486031 atttgtgc-gatacttgtatatcttttattttgccaattagctttagaat--tttttatcaacctttccCCTGACCCCAATCCAGTTAGAATTTGA----CTGGAC----GATTGACA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           311869 110 +  18854210 TTTTTTGCAAAGATTTGTGTATT-TTTATTT---CAATTAGCTTTAGAATTATTTTTACCCACCTTTCCCCCAACCCCAATCTAATTAACATTTGATCAGTTGGAA----TATTGGCA
i otoGar3.GL873550         I 130 C 0
s dasNov3.JH567297            25854 101 +     53444 ATTTTCATGGACA--TGCATATG-TTTATCTTGCCAATTAACTTTAGAATTATTTTTACCAATCC---------CACCAATCCAGCTGATATTCGG----CTGGATGGAAAACTGAC-
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58099036 2302 -  94987271 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e calJac3.chr4             30460701 4153 + 171630274 I

a score=456457.000000
s hg38.chr6_GL000254v2_alt  1482831 39 +   4827813 ATATTTTCAC-ATGGCATCCTTCTATCCAATAGTGAAGGC
s panTro5.chr6             30352258 39 + 175400573 ATATTTTCAC-GTGGCATCCTTCTATCCAATAGTGAAGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30586607 39 + 173848474 ATATTTTCAC-ATGGCATCCTTCTATCCAATAGTGAAGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     293678 39 +   2037526 ATATTTTCAC-ATGGCATCCTTCTATCCAATAGTGAAGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74960468 39 + 122973662 ATATTTTCAC-ATGGCATCCTTCTATCCAATAGTGAAGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30838756 39 + 172585720 ATATTTTCAC-ATGGCATCCTTCTATCCAATAGTGAAGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30128238 39 - 170955103 ATATTTTCAC-ATGGCATCCTTCTATCCAATAGTGAAGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     377454 39 +   1495729 ATATTTTCAC-ATGGCATCCTTCTATCCAATAGTGAAGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     479183 39 -    863181 ATATTTTCAC-ATGGCATCCTTCTATCCAATAGTGAAGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29628883 39 -  71996105 ATATTTTCAC-ATGGCATCCTTCTATCCAATAGTAAAGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     347464 39 -    735854 ATATTTTCAC-ATGGCATCCTTCTATCCAATAGTGAAGGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     266476 39 -   1829203 ATATTTTCAC-ATGGCATCCTTCTATCCAATAGTGAAGGC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           273082 39 +    515838 ATATTTTCAC-ATGGTGTCCTTTTATCCAATAGTGAAGGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     902393 39 -   1771730 ATATTTTCAC-ATGGTGTCCTTTTATCCAATAGTGAAGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      78166 39 -    486031 ATATTTTCAC-ATGGTGTCTTTTTATCCAATAGTGAAGGC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           311979 39 +  18854210 ATATTTTTGC-TTGATATCTTTCTAGCCAATAATAAAAGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58101338 39 -  94987271 ATACTTCCCT-GTCAGGTCTTTCTACCCAATAGTGAAGGC
i mm10.chr17               I 2302 I 117
s dasNov3.JH567297            25955 40 +     53444 ATATTTTCACTGTGGTATCTCTCCATTGAATAGAGAGGTA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e calJac3.chr4             30460701 4153 + 171630274 I

a score=338194.000000
s hg38.chr6_GL000254v2_alt  1482870 42 +   4827813 TGAACTTCCAAAGCTGAGGTAGCTTTGAGATACTTGACTTTT
s panTro5.chr6             30352297 42 + 175400573 TGAACTTCCAAAGCTGAGGTAGCTTTGAGATACTTGACTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30586646 42 + 173848474 TGAACTTCCAAAGCTGAGGTAGCTTTGAGATACTTGACTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     293717 42 +   2037526 TGAACTTCCAAAGCTGAGGTAGCTTTGAGATACTTGACTTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74960507 42 + 122973662 TGAACTTCCAAAGCTGAGGTAGCTTTGAGATACTTGACTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30838795 42 + 172585720 TGAGTTTCCAAAGCTGAGGTAGCTTTGAAATACTTGACTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30128277 42 - 170955103 TGAGTTTCCAAAGCTGAGGTAGCTTTGAAATACTTGACTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     377493 42 +   1495729 TGAGTTTCCAAAGCTGAGGTAGCTTTGAAATACTTGACTTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     479222 42 -    863181 TGAATTTCCAAAGCTGAGGTAGCTTTGAGATACTTGACTTTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29628922 42 -  71996105 TGAATTTCCAAAGCTGAGGCAGCTTTGAGATACTTGACTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     347503 42 -    735854 TGAATTTCCAAAGCTGAGGTAGCTTTGAGATACTTGACTTTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     266515 41 -   1829203 TGAATTTCCAAAGCTAAGGTAGCTTTGAGATAC-TGACTTTC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           273121 37 +    515838 TGAATTTCCAAAAT-----CATCTTTGAGATACTTGGCTTTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     902432 37 -   1771730 TGAATTTCCAAAAT-----CTTCTTTGAGATACTTGGCTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      78205 37 -    486031 TGAATTTCCAAAAT-----CTTCTTTGAGATACTTGGCTTTT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           312018 12 +  18854210 CGAATTTGCAGA------------------------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58101494 34 -  94987271 TAAATTTCCAAAGT--------CTCTCAGATAGTTGGCTTTT
i mm10.chr17               I 117 C 0
s dasNov3.JH567297            25995 37 +     53444 GGGATTGTCAAAGT-----CTTCTTCTAGGTACTTGACTTTA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e calJac3.chr4             30460701 4153 + 171630274 I

a score=2268890.000000
s hg38.chr6_GL000254v2_alt  1482912 222 +   4827813 GGAGAACAT-GTTATGATACAGAATGAGAAAGTGGGGAGTCCAGATTAAAAGTGACTACAGAAAGGTAGAGAAATAATTGAAAAAGCC--AG------------------------AGGCAAAGTTCTATTTGGTTCTAACATCATTCCCTCCAGGTGCAATGTCCACAGGAGAGTGGG--GAGGGATTCCTCACCTGCCGATGAAGCAGCATAAGATGGAGAAATTTATT-TCCTCACTAAATGATTTTTT
s panTro5.chr6             30352339 222 + 175400573 GGAGAACAT-GTTATGATACAGAATGAGAAAGTGGGGAGTCCAGATTAAAAGTGACTACAGAAAGGTAGAGAAATAATTGAAAAAGCC--AG------------------------AGGCAAAGTTCTATTTGGTTCTAACATCATTCCCTCTAGGTGCAATGTCCACAGGAGAGTGGG--GAGGGATTCCTCACCTGCCGATGAAGCAGCATAAGATGGAGAAATTTATT-TCCTCACTAAATGATTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30586688 222 + 173848474 GGAGAACAT-GTTATGATACAGAATGAGAAAGTGGGGAGTCCAGATTAAAAGTGACTACAGAAAGGTAGAGAAATAATTGAAAAAGCC--AG------------------------AGGCAAAGTTCTATTTGGTTCTAACATCATTCCCTCTAGGTGCAATGTCCACAGGAGAGTGGG--GAGGGATTCCTCACCTGCCGATGAAGCAGCATAAGATGGAGAAATTTATT-TCCTCACTAAATGATTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     293759 222 +   2037526 GGAGAACAT-GTTATGATACAGAATGAGAAAGTGGGGAGTCCAGATTAAAAGTGACTACAGAAAGGTAGAGAAATAATTGAAAAAGCC--AG------------------------AGGCAAAGTTCTATTTGGTTCTAACATCATTCCCTCTAGGTGCAATGTCCACAGGAGAGTGGG--GAGGGATTCCTCACCTGCCGATGAAGCAGCATAAGATGGAGAAATTTATT-TCCTCACTAAACGATTTTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74960549 222 + 122973662 GGAAAACAT-GTTATGATACAGAATGAGAAAGTGGGGAGTCCAGATTAAAAGTGACTACAGAAAGGTAAAGAAATAATTGAAAAAGCC--AG------------------------AGGCAAAGTTCTATTTGGTTCTAACATCATTCCCTCTAGGTGCAGTGTCCACAGGAGAGTGGG--GAGGGATTCCTCACCTGCCGATGAAGCAGCATAAGATGGAGAAATTTATT-TCCTCACTAGATGATTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30838837 222 + 172585720 GGAGAACAT-GTTATGATGCAGAATGAGAAAGTGGGGAATCCAGATTTAAAGTAACTATGGAAAGGTAGAGAAATAATTCAAAAAGCC--AG------------------------AGGCAAAGTTCTACTTGGTTGTAATATCATTCCCTCTAGGTGCAGTGTTCACAGGAGAGTGGG--GAGGGATTTCTCACCTGCCGATGAAGCAGCATAAGATGGAGAAATTTATT-TCGtcaataagtgatttatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30128319 222 - 170955103 GGAGAACAT-GTTATGATGCAGAATGAGAAAGTGGGGAATCCAGATTTAAAGTAACTATGGAAAGGTAGAGAAATAATTCAAAAAGCC--AG------------------------AGGCAAAGTTCTACTTGGTTGTAATATCATTCCCTCTAGGTGCAGTGTCCACAGGAGAGTGGG--GAGGGATTTCTCACCTGCCGATGAAGCAGCATAAGATGGAGAAATTTATT-TCGTCAATAAGTGATTTATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     377535 222 +   1495729 GGAGAACAT-GTTATGATGCAGAATGAGAAAGTGGGGAATCCAGATTTAAAGTAACTATGGAAAGGTAGAGAAATAATTCAAAAAGCC--AG------------------------AGGCAAAGTTCTACTTGGTTGTAATATCATTCCCTCTAGGTGCAGTGTCCACAGGAGAGTGGG--GAGGGATTTCTCACCTGCCGATGAAGCAGCATAAGATGGAGAAATTTATT-TCGtcaataagtgatttatt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     479264 222 -    863181 GGGGAACAT-GTAATGATGCAGAATGAGAAAGTGGGGAATCCAGATTTAAAGTAACAATGGAAAGGTAGAGAAATAATTCAGAAAGCC--AG------------------------AGGCAAAGTTCTACTTGGTTGTAATATAATTCCCTCTAGGTTCAGTGTCCACAGGAGAGTGGG--GAGGGATTTCTCACCTGCCGATGAAGCAGCATAAGATGGAGAAATTTATT-TCCtcaataagtgatgtatt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29628964 222 -  71996105 GGAGAACAT-ATTATGATGCAGAATGAGAAAGTGGGGAGTCCAGATTTAAAGTAACTATGGAAAGGTAGAGAAATAATTCAGAAAGCC--AG------------------------AGGCAAAGTTCTACTTGGTTGTAATACCATTCCCTCTAGGTGCAGTGTCCACAGGAGAGTGGG--GAGGGATTTCTCACCTGCCGATGAAGCAGCATAAGATGGAGAAATTTATT-TCCTCAATAAGTGATTTATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     347545 222 -    735854 GGGGAACAT-GTTATGATGCAGAATGAGAAAGTGGGGAATCCAGATTTAAAGTAACAATGGAAAGGTAGAGAAATAATTCAGAAAGCC--AG------------------------AGGCAAAGTTCTACTTGGTTGTAATATCATTCCCTCTAGGTTCAGTGTCCACAGGAGAGTGGG--GAGGGATTTCTCACCTGCCGATGAAGCAGCATAAGATGGAGAAATTTATT-TCCtcaataagtgatgtatt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     266556 222 -   1829203 GGAGAATAT-GTTATGATGCAGAATGAGAAAGTGGGGAGTCCAGATTTAAAGTAACTGTGGAAAGGTAGAGAAATAATTCAAAAAGCC--AG------------------------AGGCAAAGTTCTACTTGGTTGTAACATCATTCCCTCTAGGTGCAGTGTCCACAGGAGAGTGGG--GAGGGATTTCTCACCTGCCTATGAAGCAGCATAAGATGGAGAAATTTATT-TCCtcaataagtgatttatt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30464854 248 + 171630274 GGAGAACAT-GTTATGATACAAAATAAGGAAGTGGGAAGTCCATATTGGAGATGACTATGGAAAGGTAGAGAAATAATTCAAAAAGCC--AGTTTTTGaatttaaaaaaaattattttaCGACGTTCTGCTTGGTTCTAACATCATTTCCTTTAGGCGCAGTGTCCACA-GAGAGTGGGGTGGGGGATTTCTCATCTGCCGATGACACAGCGTAAGATGGAGAAATTTATTCCCCTCACTAGATGATTTATT
i calJac3.chr4             I 4153 C 0
s saiBol1.JH378341           273158 248 +    515838 AGAGAACAT-GTTATTATACAAAATAAGAAAGTGGGAAGTCCATATGGGAAATGACTGTGGGAAGGTAGAGAAATCATTCAAAAACCC--AGTTTTCGAATTTTTTAAAAATTATTTTGCAAAGTTCTACTTGGTTCTAACATCATTTCCTGTAGGCACACTGTCCACA-GAGAGTGGGGTGGGGGATTTCTCACCTGACGATGAGACAGCATAAGATGGAGAAATGTATTCCCCTCCCTAAATGATTAATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     902469 248 -   1771730 GGAGAACAT-GTTATGATACAAAATAAGAAAGTGGGAAGTCCATGTTGGAAATGACTATAGAAAGATAGATAAATAATTCAAAAAGCC--AGTTTTTGAATTTTTTAAAAATTATTTTGCAAAGTTCTGCTTGGTTCTAACATCATTTTCTCTAGGCACACTGTCCACA-GAGAGTGGGGTGGGGGATTTCTCACCTGCCGATGAGGCAGCATAAGATGGAGAAATTTATTCCCCtcactaaatgatttatt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      78242 248 -    486031 GGAGAACAT-GTTATGATATAAAATAAGAAAGTGGGAAGTCCATACTGGAAATGACTATGGAAAGGTAGAGAAATAATTCAAAAAGCC--AGTTTTTGAATTTTTTAAAAATTATTTTGCAAAGTTCTACGTAGTTCTAACATCATTTCCTCTAGGCACACTGTCCACA-GAGAGTGGGGTGGGGGATTTCTCACCTGCCGATGAGGCAGCATAAGATGGAGAAATTTATTCCCCtcactaaatgatttatt
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           312030 193 +  18854210 -GAGAATAT-GCTATGATACAAGAAGAGAAAGTGGG-AGTCCAGATTGGAGGTAACTATGAAAAGATGGAGAAATAATACAAAAAGCCAAAG------------------------AGACAAAGTTCTCTTTGATTCTAACATCATTCCCTCAAGATGCAGTGTCAGCAGGAGAGTGGG--GACAG-----------------------GCAT------GAGAAACCTAAT-CACTCACTAAGTGAtttttt
i otoGar3.GL873550         C 0 I 247
s mm10.chr17               58101528 186 -  94987271 AAAGAAAGTCGTCACCATGTGGAACAATAGACGAGACAGTCTAAATCGAAACCGA--ATGTACAGG-------ATGATTCAGAAAGCTGAAA------------------------GGGCCATGTTCTACTGTGTC--------------------TACTAAGTCTACAGTAGAG-GGG--TAGGG---------CTTCCCATGAGTCAGGTGTGCAAAGACAGGGCTCTT-CCATACTTGAATGATTAACT
i mm10.chr17               C 0 C 0
s dasNov3.JH567297            26032 209 +     53444 TGGGGGCAC-GT----ATAGAGGATGAGAAACTAGGGAGTCAAGTTTGGGGG-GACCATGAAAAGATAAATGGACAATTCAGAAAGTTG-AG------------------------GGGCAAAGCTCTCTTTGATTCTAATGTCATTCTCTCTAGGTGTAGTG--AGCAGGGGGGAGGG--GAGGGACTTCCCACCTCCTGATGAGCTAAGAGACCCTGAAGGA--------ACTACACTGGCTTACTTATT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I

a score=1156324.000000
s hg38.chr6_GL000254v2_alt  1483134 102 +   4827813 CAGGTCTGTCCTTTGTGTTAGATGTCATGCTAGGCATT--GTAGAAAGTACAAAGATGATTCATAATTCTTG-----------------TTTCAAAT---------------------------------------------CTGTCTTTAAATAATGACAAGAAA
s panTro5.chr6             30352561 102 + 175400573 CAGGTCTGTCCTTTGTGTTAGATGTCATGCTAGGCATT--GTAGAAAGTACAAAGATGATTCATAATTCTTG-----------------TTTCAAAT---------------------------------------------CTGTCTTTAAATAATGACAAGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30586910 102 + 173848474 CAGGTCTGTCCTTTGTGTTAGATGTCATGCTAGGCATT--GTAGAAAGTACAAAGATGATTCATAATTCTTG-----------------TTTCAAAT---------------------------------------------CTGTCTTTAAATAATGACAAGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     293981 102 +   2037526 CAGGTCTGTCCTTTGTGTTAGATGTCATGCTAGGCATT--GTAGAAAGTACAAAGATGATTCATAATTCTTG-----------------TTTCAAAT---------------------------------------------CTATCTTTAAATAATGACAAGAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74960771 102 + 122973662 CACGTCTGTCCTTTGTGTTAGATGTCATGCTAGGCATT--GTAGAAAGTACAAAGATGATTCATAATTCTTG-----------------TTTCAAAT---------------------------------------------CTGTCTTTAAATAATGACAAGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30839059 102 + 172585720 cagttctgtactttgtgttagatgtcatgctaggcatt--gtaggaagtaaaaagaTGATTCACAATTCTTG-----------------CTTCAAAT---------------------------------------------CTGTCTTTAAATAATGACAAGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30128541 102 - 170955103 CAGTTCTGTACTTTGTGTTAGATGTCATGCTAGGCATT--GTAGGAAGTAAAAAGATGATTCACAATTCTTG-----------------CTTCAAAT---------------------------------------------CTGTCTTTAAATAATGACAAGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     377757 102 +   1495729 cagttctgtactttgtgttagatgtcatgctaggcatt--gtaggaagtaaaaagaTGATTCACAATTCTTG-----------------CTTCAAAT---------------------------------------------CTGTCTTTAAATAATGACAAGAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     479486 102 -    863181 cagttctgtactttgtgttagatgtcatgctaggcatt--gtaggaagtacaaagatgattcataattcttg-----------------cttcaaAT---------------------------------------------CTGTCTTTAAATAATGACAAGAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29629186 102 -  71996105 CAGTTCTGTACTTTGTGTTAGATGTCATGCTAGGCATT--GTAGGAAGTACAATGATGATTCATAATTTTTG-----------------CTTCAAAT---------------------------------------------CTGTCTTTAAATAATGACAAGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     347767 102 -    735854 cagttctgtactttgtgttagatgtcatgctaggcatt--gtaggaagtacaaagatgattcataattcttg-----------------cttcaaat---------------------------------------------ctgtctttaaataatgacaagaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     266778 102 -   1829203 cagttctgtactttgtgttagatgtcatgctaggcatt--gtagaaagtacaaagatgattcataattcttg-----------------cttcaaAT---------------------------------------------CTGTCTTTAAATAATGACAAGAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30465102 102 + 171630274 CAGGTCTGTACTTGGTGTTAGATGTCATGCTAGGCATT--GCAGGAAGTACAAAGATGATTTATAATTCTTG-----------------TTTCAAAT---------------------------------------------CTGACTTTAAGTAATGACAAGAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           273406 102 +    515838 CAGGTCTGTACTTTGTGTTAGGTGTCATGCTGGGCATT--GCAGGAAGTACAAAGATGATTCATAATTCTTG-----------------TTTCAAAT---------------------------------------------CTGACTTTAAATAATGACAAAAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     902717 102 -   1771730 caggtctgtactttgtgttaggtgtcatgctaggcatt--gcaggaagtacaaagatgattcataattcttg-----------------tttcaaat---------------------------------------------ctgactttaaataatgacaagaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      78490 102 -    486031 caggtctgtactttgtgttagatgtcatgctacgcatt--gcaggaagtacaaagatgattcataattcttg-----------------cttcaaAT---------------------------------------------CTGACTTTAAATAATGACAAGAAA
i aotNan1.NW_018496901v1   C 0 M 2215
s mm10.chr17               58101714  98 -  94987271 CGGGTCTGCGCTGTCTGTAAGATGTCACGACAGGCATTGGGGAGGAAACGCAAAGGTGATTCAGGA-----------------------CTTCAAGT---------------------------------------------CCATACTTAAGTAGTAACAGGAAG
i mm10.chr17               C 0 C 0
s dasNov3.JH567297            26241 163 +     53444 TAAGTCTGTATTTTGTGCAGGATGTGGTGCTAGGCGTT--GTGGGAA-TACAAAGGCGATTCATAATCCTTGTAGTCAACACTACCTTTTTTCATGTACAGTTTTTTTACTTTTTAAAAAAGATACTTAGATTACATGAACACTACATTTAAATTATGACAGGAAC
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           312223 247 +  18854210 I

a score=645015.000000
s hg38.chr6_GL000254v2_alt  1483236 67 +   4827813 GCTAAAACAAATAAATAACGATGACacttgttcat-taagt-aaaccttagtaagttcctgctgtgtgt
s panTro5.chr6             30352663 68 + 175400573 GCTAAAACAAATAAATAACGATGACacttgttcat-taagtaaaaacttagtaagttcctgctgtgtgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30587012 68 + 173848474 GCTAAAACAAATAAATAACGATGACacttgttcat-taagtaaaaacttagtaagttcctgctgtgtgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     294083 68 +   2037526 GCTAAAACAAATAAATAACGATGACacttgttcat-taagtaaaaacttagtaagttcctgctgtgtgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74960873 67 + 122973662 GCTAAAACAAATAAATAACGATGACACTTGtt-at-taagtaaaaacttagtaagatcctgctgtgtgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30839161 68 + 172585720 CCTAAAACAAATAAATAACAATGACacttgttcat-taagtaaaaacttaataagttcctgctgtgtgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30128643 68 - 170955103 CCTAAAACTAATAAATAACAATGACacttgttaat-taagtaaaaacttaataagttcctgctgtgtgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     377859 68 +   1495729 CCTAAAACAAATAAATAACAATGACacttgttcat-taagtaaaaacttaataagttcctgctgtgtgt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     479588 68 -    863181 CCTAAAACAAATAAGTAACAACGACacttgttcat-taagtaaaaacttaataagttcctgctgtgtgt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29629288 68 -  71996105 CCTAAAACAAATAAATAACAATGACacttgttcat-taagtaaaaacttaataagttcctgctgtgtgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     347869 68 -    735854 cctaaaacaaataagtaacaatGACacttgttcat-taagtaaaaacttagtaagttcctgctgtgtgt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     266880 68 -   1829203 CCTAAAACAAATAGATAACAATGACacttgttcat-taagtaaaaacttaataagttcctgctgtgtgt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30465204 68 + 171630274 CCTAAAACAAATAAGTAATGAGGACatttgttcat-taagtaaaaacttaataagttcctgctgtgtgt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           273508 68 +    515838 CCTAAAACAAATAAATAATGATGACatttgttcat-taagtaaaaacttattaagttcctgctgtgtgt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     902819 68 -   1771730 cctaaaacaaataaataatgatGACatttgttcat-taagtaaaaacttaataagttcctgctgtgtgt
i cebCap1.NW_016107755v1   C 0 C 0
s mm10.chr17               58101812 62 -  94987271 -TGTAGAAAAATAAATATGA---ACATTTGTTCTTATAAGGAAGA---CAGTGAGTGTCTGCTGCACGT
i mm10.chr17               C 0 I 22
s dasNov3.JH567297            26404 64 +     53444 CCTAAAATGAATATATTACAACAATATTTGCTCTT-T---TAAGGACTGAATAAGTTTCCACTGT-TGT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           312223 247 +  18854210 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M

a score=333265.000000
s hg38.chr6_GL000254v2_alt  1483303 38 +   4827813 gagaaactgcagcatgtgctaggaat-caatga------agacag
s panTro5.chr6             30352731 38 + 175400573 gagaaactgcagcatgtgctaggaat-caatga------agacag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30587080 38 + 173848474 gagaaactgcagcatgtgctaggaat-caatga------agacag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     294151 38 +   2037526 gagaaactgcagcatgtgctaggaat-caatga------agacag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74960940 38 + 122973662 aagaaactgcagtatgtgctaggaat-ctatga------agacag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30839229 38 + 172585720 gagaaactgcagtatatgttagaaat-caatga------agacag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30128711 38 - 170955103 gagaaactgcagtatatgttagaaat-caatga------agacag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     377927 38 +   1495729 gagaaactgcagtatatgttagaaat-caatga------agacag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     479656 38 -    863181 gagaaactgcagtatatgttagaaat-caatga------agacag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29629356 38 -  71996105 gagaaactgcagtatatgttagaaat-caatga------agacag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     347937 38 -    735854 gagaaactgcagtatatgttagaaat-caatga------agacag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     266948 38 -   1829203 gagaaactgcagtatatgttagaaat-cagtga------agacag
i colAng1.NW_012115577v1   C 0 I 1024
s calJac3.chr4             30465272 38 + 171630274 gagaaactacagtgtatgccaggaat-cagtga------agacag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           273576 38 +    515838 gagaaattgcagtatatgccaggaat-caatga------agacag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     902887 38 -   1771730 gagaaactgcagtatatgccaggaat-cggtga------agacag
i cebCap1.NW_016107755v1   C 0 C 0
s dasNov3.JH567297            26468 44 +     53444 TAGCATCT-TGATACATGCCAGGAGCACAATGATAATCGAGGCAG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58101874 22 -  94987271 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           312223 247 +  18854210 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M

a score=569799.000000
s hg38.chr6_GL000254v2_alt  1483341 75 +   4827813 atgccattccttctgcca-ggagtttgcagtgtagtaagggagaca--caaataagtaatcaaagaa-ctgtaac---------tttt-
s panTro5.chr6             30352769 74 + 175400573 atgccattccttctgcca-ggagtttgcagtgtagtaagggagaca--caaataagtaatcaaagaa-ctgtaac----------ttt-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30587118 74 + 173848474 atgccattccttctgcca-ggagtttgcagtgtagtaagggagaca--caaataagtaatcaaagaa-ctgtaaa----------ctt-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     294189 84 +   2037526 attccattccttctgcca-ggagtttgcagtgtagtaagggagaca--caaataagtaatcaaagaa-ctgtaactttttttcttttt-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74960978 75 + 122973662 acgccattccttctgcca-ggagtttgcagtgtagtaagggagaca--caaataagtaatcaaagaa-ttgtaac---------tttt-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30839267 74 + 172585720 atgccattccttctgcca-ggagtttgcagtttagtaagggagaca--caaacaagtaatcaaagaa-ctgtaaa----------ctt-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30128749 74 - 170955103 atgccattccttctgcca-ggagtttgcagtttagtaagggagaca--caaacaagtaatcaaagaa-ctgtaaa----------ctt-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     377965 73 +   1495729 atgccattccttctgcca-ggagtttgcagtttagtaagggagaca--caaacaagtaatcaaagaa-ctgtaaa----------c-t-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     479694 73 -    863181 atgccattccttctgcca-ggagtttgcagtttagtaagggagaca--caaacaagtaatcaaagaa-ctgtaaa----------c-t-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29629394 74 -  71996105 atgccattccttctgcca-ggagtttgcagtttagtaagggagaca--caaacaagtaatcaaagaa-ctgtaaa----------ctt-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     347975 74 -    735854 atgccattccttctgcca-ggagtttgcagtttagtaagggagaca--caaacaagtaatcaaagaa-ctgtaaA----------Ctt-
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30465310 74 + 171630274 acaccattccttccacca-ggagtttgcagtttagtaagggagaca--caaataagtaatcaaagaa-ctgtaac----------gtt-
i calJac3.chr4             C 0 I 2
s saiBol1.JH378341           273614 74 +    515838 ataccattccttccacca-ggagtttgcagtttattaagggagaca--caaataagtaatcaaagaa-ctgtaac----------ttt-
i saiBol1.JH378341         C 0 I 2
s cebCap1.NW_016107755v1     902925 74 -   1771730 ataccattccttctgcca-agagtttgcaggttagtaagggagaca--caaataagtaatcaaagaa-ctgtaac----------att-
i cebCap1.NW_016107755v1   C 0 I 1
s dasNov3.JH567297            26512 79 +     53444 GTGCCATCCCTGCTGCCAGGGGGTTGGCAGCTTACTAAGGGGGCCGATTGAGTAAGAAATCAGACAAGCTGCAAG----------TGTT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58101874 22 -  94987271 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           312223 247 +  18854210 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e colAng1.NW_012115577v1     266986 1024 -   1829203 I

a score=-21218.000000
s hg38.chr6_GL000254v2_alt  1483416  3 +   4827813 -tt-----------t
s panTro5.chr6             30352843  3 + 175400573 -tt-----------t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30587192  3 + 173848474 -tt-----------t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     294273  3 +   2037526 -tt-----------t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74961053  3 + 122973662 -tt-----------t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30839341  2 + 172585720 -tt------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30128823  2 - 170955103 -tt------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     378038  2 +   1495729 -tt------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     479767  2 -    863181 -tt------------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29629468  9 -  71996105 -tttttttgt-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     348049 13 -    735854 -ttttttttttttt-
i manLeu1.NW_012107142v1   C 0 T 2882
s calJac3.chr4             30465386  2 + 171630274 -at------------
i calJac3.chr4             I 2 C 0
s saiBol1.JH378341           273690  2 +    515838 -tt------------
i saiBol1.JH378341         I 2 C 0
s dasNov3.JH567297            26591  3 +     53444 CTT------------
i dasNov3.JH567297         C 0 I 455
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58101874 22 -  94987271 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           312223 247 +  18854210 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e cebCap1.NW_016107755v1     902999  1 -   1771730 I
e colAng1.NW_012115577v1     266986 1024 -   1829203 I

a score=-872.000000
s hg38.chr6_GL000254v2_alt  1483419 4 +   4827813 ttct----
s panTro5.chr6             30352846 4 + 175400573 ttct----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30587195 4 + 173848474 ttct----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     294276 8 +   2037526 ttctcttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74961056 4 + 122973662 ttct----
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378341           273692 3 +    515838 -----ttg
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58101874 22 -  94987271 I
e dasNov3.JH567297            26594 455 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           312223 247 +  18854210 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e cebCap1.NW_016107755v1     902999 1 -   1771730 I
e calJac3.chr4             30465388 0 + 171630274 C
e colAng1.NW_012115577v1     266986 1024 -   1829203 I
e manLeu1.NW_012107142v1     348062 2882 -    735854 T
e chlSab2.chr17            29629477 0 -  71996105 C
e cerAty1.NW_012002535v1     479769 0 -    863181 C
e macNem1.NW_012012100v1     378040 0 +   1495729 C
e macFas5.chr4             30128825 0 - 170955103 C
e rheMac8.chr4             30839343 0 + 172585720 C

a score=1632.000000
s hg38.chr6_GL000254v2_alt  1483423 5 +   4827813 ttttt
s gorGor5.CYUI01015528v1     294284 5 +   2037526 ttttt
i gorGor5.CYUI01015528v1   C 0 C 0
s saiBol1.JH378341           273695 5 +    515838 ttttt
i saiBol1.JH378341         C 0 I 1
s otoGar3.GL873550           312470 5 +  18854210 cccTT
i otoGar3.GL873550         I 247 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58101874 22 -  94987271 I
e dasNov3.JH567297            26594 455 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e cebCap1.NW_016107755v1     902999 1 -   1771730 I
e calJac3.chr4             30465388 0 + 171630274 C
e colAng1.NW_012115577v1     266986 1024 -   1829203 I
e manLeu1.NW_012107142v1     348062 2882 -    735854 T
e chlSab2.chr17            29629477 0 -  71996105 C
e cerAty1.NW_012002535v1     479769 0 -    863181 C
e macNem1.NW_012012100v1     378040 0 +   1495729 C
e macFas5.chr4             30128825 0 - 170955103 C
e rheMac8.chr4             30839343 0 + 172585720 C
e nomLeu3.chr1a            74961060 0 + 122973662 C
e panPan2.chr6             30587199 0 + 173848474 C
e panTro5.chr6             30352850 0 + 175400573 C

a score=55583.000000
s hg38.chr6_GL000254v2_alt  1483428 14 +   4827813 cttttttttttttt
s panTro5.chr6             30352850 13 + 175400573 -ttttttttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30587199 13 + 173848474 -ttttttttttgtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     294289 14 +   2037526 tttttttttttttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74961060  7 + 122973662 -------ttttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30839343 14 + 172585720 tttttttttttttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30128825 14 - 170955103 tttttttttttttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     378040 14 +   1495729 tttttttttttttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     479769 14 -    863181 ttttttttcttttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29629477 13 -  71996105 -tttgttttgtttt
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341           273701 14 +    515838 ttttgtttttgttt
i saiBol1.JH378341         I 1 M 243
s otoGar3.GL873550           312475 14 +  18854210 TTTTTTtttttttt
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58101874 22 -  94987271 I
e dasNov3.JH567297            26594 455 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e cebCap1.NW_016107755v1     902999  1 -   1771730 I
e calJac3.chr4             30465388  0 + 171630274 C
e colAng1.NW_012115577v1     266986 1024 -   1829203 I
e manLeu1.NW_012107142v1     348062 2882 -    735854 T

a score=724326.000000
s hg38.chr6_GL000254v2_alt  1483442 198 +   4827813 gagatggagtctcactctgtcacccaagctggagagcagtggcatgatctcggctcactgcaacctcc---------------------------------------------------------------------------gtctcccaggttcaagcaattc-tttgcctcagcctcccgagtagctgggattacaggcacccaccaccaggcctagcta---------------atttttgtatttt--------tagtagaaacg--gggtttc-------accatcttggccaggctggt-
s panTro5.chr6             30352863 198 + 175400573 gagatggagtctcactctgtcacccaggctggagagcagtggcgtgatctcggctcactgcaacctcc---------------------------------------------------------------------------gtctcccaggttcaagcaattc-tttgcctcagcctcccgagtagctgggattacaggcacccaccaccaggcctagcta---------------atttttgtatttt--------tagtagaaacg--gggtttc-------accatcttggccaggctggt-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30587212 198 + 173848474 agtatggagtctcactctgtcacccaggctggagagcagtggcgtgatctcggctcactgcaacctcc---------------------------------------------------------------------------atctcccaggttcaagcaattc-tttgcctcagcctcccgagtagctgggattacaggcacccaccaccaggcctagcta---------------atttttgtatttt--------tagtagaaacg--gggtttc-------accatcttggccaggctggt-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     294303 198 +   2037526 gagatggagtctcactctgtcacccaggctggagagcagtggcatgatctcggctcactgcaacctcc---------------------------------------------------------------------------gcctcccaggttcaagcaattc-tttgcctcagcctcccgagtagctgggattacaggcacccaccaccaggcccagcca---------------atttttgtatttt--------tagtagaaacg--gggtttc-------accatcttggccaggctggt-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74961067 198 + 122973662 gagacggagtctcactctgtcacccaggctggagtgcagtggcatgatctcggctcactgcaacctcg---------------------------------------------------------------------------gcctcccaggttcaagcaattc-tttgcctcagcctcccgagtagctgggattacaggcacccaccaccaggcccagcta---------------atttttgtatttt--------tagtagaaacg--gagtttc-------accatcttggccaggctggt-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30839357 195 + 172585720 gagacagaatctcactctgtcacccaggttggagtgcagtggcgtgatcttggctcactgcaacctcc---------------------------------------------------------------------------accttccgggttcaagcaattc-tccgcctcagcctcctgagtaactgggattacaggcgcccaccaccatgcccaacta---------------atttttgtattt-----------gtagaaatg--gagtttc-------cccatcttggccggggtagt-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30128839 195 - 170955103 gagacagaatctcactctgtcacccaggttggagtgcagtggcgtgatcttggctcactgcaacctcc---------------------------------------------------------------------------accttccgggttcaagcaattc-tccacctcagcctcctgagtaactgggattacaggcgcccaccaccatgcccaacta---------------atttttgtattt-----------gtagaaatg--gagtttc-------cccatcttggccagggtagt-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     378054 195 +   1495729 gagacagaatctcactctgtcacccaggttggagtgcagtggcgtgatcttggctcactgcaacctcc---------------------------------------------------------------------------accttccgggttcaagcaattc-tccacctcagcctcctgagtaactgggattacaggcgcccaccaccatgcccaacta---------------atttttgtattt-----------gtagaaatg--gagtttc-------cccatcttggccagggtagt-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     479783 195 -    863181 gagacaaactctcactctgtcacccaggttggagtgcagtggcgtgatcttggctcactgcaacctcc---------------------------------------------------------------------------accttccgggttcaagcaattc-tctgcctcagcctcctgagtagctgggattacaggcgcccgccaccatgcacaacta---------------atttttgtattt-----------gtagaaatg--gggtttc-------cccatcttgtccggggtggt-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29629490 195 -  71996105 gagacagagtctcactctgtcacccaggttggagtgcagtggcgtgatcttggctcactgcaacctcc---------------------------------------------------------------------------accttctgggttcaagcaattc-tctgcctcagcctcctgagtagctgggattacaagcgcccgccaccatgcccaacta---------------atttttgtattt-----------gtagaaatg--ggctttc-------cccatcttggccggggtggt-
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550           312489 303 +  18854210 gagacggagtctcaagttgtcgccctgtgtagagtgccgtggcatcat----agtcacagcaacctccaattcttcttctcttgcctcagtttttttatttctagtaaaaacaggggtctcacttttgctcaggctgatcttgaactcgtgagctcgagcaatccaccccccttgccctcccagagtgctaggattacaggcataaaccaccgctcccagccACTAAATGATTTATTTATGTCTGTAGTTTGTGCTGGATGGTAGGTATGCTAGGTACTGTGGGAAGTAATCCTTGTCAAGTCTGTC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58101874  22 -  94987271 I
e dasNov3.JH567297            26594 455 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           273715 243 +    515838 M
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e cebCap1.NW_016107755v1     902999   1 -   1771730 I
e calJac3.chr4             30465388   0 + 171630274 C
e colAng1.NW_012115577v1     266986 1024 -   1829203 I
e manLeu1.NW_012107142v1     348062 2882 -    735854 T

a score=189071.000000
s hg38.chr6_GL000254v2_alt  1483640  58 +   4827813 cttg----------------------------------------------------------------aactcctg------------------------acctcatgatccatctgc---------gctggcctccc----------------------------------------------aaa---------------------------------------agaactgtaacttt
s panTro5.chr6             30353061  58 + 175400573 cttg----------------------------------------------------------------aactcctg------------------------acctcatgatccatctgc---------gctggcctccc----------------------------------------------aaa---------------------------------------agaactataacttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30587410  58 + 173848474 cttg----------------------------------------------------------------aactcctg------------------------acctcatgatccatctgc---------gctggcctccc----------------------------------------------aaa---------------------------------------agaactataacttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     294501  58 +   2037526 cttg----------------------------------------------------------------aactcctg------------------------acctcatgatccatctgc---------cctggcctccc----------------------------------------------aaa---------------------------------------agaactgtaacttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74961265  58 + 122973662 cttg----------------------------------------------------------------aactcctg------------------------acctcatgatccatctgc---------cttggcctccc----------------------------------------------aaa---------------------------------------agaactgtaacttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30839552  58 + 172585720 cttg----------------------------------------------------------------aactactg------------------------accttgtcatccatctgc---------ttcatcctccc----------------------------------------------aaa---------------------------------------agaactgtaacttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30129034  58 - 170955103 cttg----------------------------------------------------------------aactactg------------------------accttgtcatccatctgc---------ctcagcctccc----------------------------------------------aaa---------------------------------------agaactgtaacttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     378249  58 +   1495729 cttg----------------------------------------------------------------aactactg------------------------accttgtcatccatctgc---------ctcagcctccc----------------------------------------------aaa---------------------------------------agaactgtaacttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     479978  58 -    863181 cttg----------------------------------------------------------------aactactg------------------------accttgtcatccatctgc---------ctcagcctccc----------------------------------------------aaa---------------------------------------agaactgtaacttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29629685  58 -  71996105 cttg----------------------------------------------------------------aactactg------------------------accttgtcattcatctgc---------ctcagcctccc----------------------------------------------aaa---------------------------------------agaactgtaacttt
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341           273966  97 +    515838 ctcg----------------------------------------------------------------atctcttg------------------------acctcgtgatccacccgc---------ctcggcctccc----------------------------------------------aaagtgctgggattacaggcttgagccaccgcacccggccTCAGAACTGTAACATT
i saiBol1.JH378341         M 243 C 0
s otoGar3.GL873550           312792 201 +  18854210 CTTGAGTAATGACAAGAAAACTAAAACAAGTAAAATAACAACatttgttaattaaagcaaaacttaataattcctgctgtgtgttaggaactgcagtacaagctaggaatcaatgagcaagacagatactgccatccctgatgccgggaacttgtgttttagtaagagagatagacaAGAAATAAAA---------------------------------------TGAATTCTAAGTGT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58101874  22 -  94987271 I
e dasNov3.JH567297            26594 455 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e cebCap1.NW_016107755v1     902999   1 -   1771730 I
e calJac3.chr4             30465388   0 + 171630274 C
e colAng1.NW_012115577v1     266986 1024 -   1829203 I
e manLeu1.NW_012107142v1     348062 2882 -    735854 T

a score=7098.000000
s hg38.chr6_GL000254v2_alt  1483698 1 +   4827813 t
s panTro5.chr6             30353119 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30587468 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     294559 1 +   2037526 t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74961323 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30839610 1 + 172585720 t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30129092 1 - 170955103 t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     378307 1 +   1495729 t
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     480036 1 -    863181 t
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29629743 1 -  71996105 t
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341           274063 1 +    515838 T
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           312993 1 +  18854210 T
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58101896 1 -  94987271 T
i mm10.chr17               I 22 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            26594 455 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e cebCap1.NW_016107755v1     902999 1 -   1771730 I
e calJac3.chr4             30465388 0 + 171630274 C
e colAng1.NW_012115577v1     266986 1024 -   1829203 I
e manLeu1.NW_012107142v1     348062 2882 -    735854 T

a score=44586.000000
s hg38.chr6_GL000254v2_alt  1483699 7 +   4827813 tattagt
s panTro5.chr6             30353120 7 + 175400573 tattagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30587469 7 + 173848474 tattagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     294560 7 +   2037526 tattagt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74961324 7 + 122973662 tattagt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30839611 7 + 172585720 tattagt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30129093 7 - 170955103 tattagt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     378308 7 +   1495729 tattagt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     480037 7 -    863181 tattagt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29629744 7 -  71996105 cattagt
i chlSab2.chr17            C 0 C 0
s saiBol1.JH378341           274064 7 +    515838 TATTAGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     903000 7 -   1771730 tattagt
i cebCap1.NW_016107755v1   I 1 C 0
s otoGar3.GL873550           312995 7 +  18854210 AACGAGC
i otoGar3.GL873550         I 1 I 1
s mm10.chr17               58101897 7 -  94987271 TATCAGA
i mm10.chr17               C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            26594 455 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e calJac3.chr4             30465388 0 + 171630274 C
e colAng1.NW_012115577v1     266986 1024 -   1829203 I
e manLeu1.NW_012107142v1     348062 2882 -    735854 T

a score=927426.000000
s hg38.chr6_GL000254v2_alt  1483706 130 +   4827813 taggaagaaaataaa-caag---------------ggtctgggatgaacagtaatgggtggcccatgtccatttggtcagtgagggcct------------catagaggaagtgaccttgaagctgagggctggcagaagagaaatcaacc--tgcaaag
s panTro5.chr6             30353127 130 + 175400573 taggaagaaaataaa-caag---------------ggtctgggatgaacagtaatgggtggcccatgtccatttggtcagtgagggcct------------catagaggaagtgaccttgaagctgagggctggcagaagagaaatcaacc--tgcaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30587476 130 + 173848474 taggaagaaaataaa-caag---------------ggtctgggatgaacagtaatgggtggcccatgtccatttggtcagtgagggcct------------catagaggaagtgaccttgaagctgagggctggcagaagagaaatcaacc--tgcaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     294567 130 +   2037526 taggaagaaaataaa-caag---------------ggtctgggatgaacagtaatgggtggcccatgtccatttggtcagtgagggcct------------catagaggaagtgacattgaagctgagggctggcagaagagaaatcaacc--tgcaaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74961331 130 + 122973662 taggaagaaaataaa-caag---------------ggtctgggatgaacagtaacgggtggcccatgtccatttggtcagtgagggcct------------catagaggaagtgaccttgaagctgagggctggcagaagagaaatcaacc--tgcaaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30839618 132 + 172585720 taggaagaaaataaa-caag---------------ggtctgggatgaacagtaattggtggcccatgtccatttggtcagtgagggcct------------catagaggaagtgaccttgaagctaagggctggcagaagagaaatcaacctgtgcaaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30129100 132 - 170955103 taggaagaaaataaa-caag---------------ggtctgggatgaacagtaattggtggcccatgtccatttggtcagtgagggcct------------catagaggaagtgaccttgaagctaagggctggcagaagagaaatcaacctgtgcaaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     378315 132 +   1495729 taggaagaaaataaa-caag---------------ggtctgggatgaacagtaattggtggcccatgtccatttggtcagtgagggcct------------catagaggaagtgaccttgaagctaagggctggcagaagagaaatcaacctgtgcaaag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     480044 132 -    863181 taggaagaaaataaa-caag---------------ggtctgggatgaacagtaattggtggcccatgtccatttggtcagtgagggcct------------catggaggaagtgaccttgaagctaagggctggcggaagagaaatcagcctgtgcaaag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29629751 132 -  71996105 taggaagaaaataaa-caag---------------ggtctgggatgaacagtaattggcggcccatgtccatttggtcagtgagggcct------------catggaggaagtgaccttgaagctgagggctggcagaagagaaatcaacctgtgcaaag
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30465388 132 + 171630274 tagggagaaaataag-caag---------------ggtctgggatggacagtaatgggtggcccatgtccatgtggtcagtgagggcct------------catagaggaagtgacgttgacgctgatggctggaagaagagaaattgaccagtgcaaag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           274071 132 +    515838 TAGGAATAAAATAAG-CAAG---------------GGTCTGGGATGGACAGTAATGGGCgacccatgtccatgtggtcagtgagggcct------------catagaggaagtgtcattgaagctgagggctggaagaagagaaattgaccagtgcaaag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     903007 132 -   1771730 taggaagaaaataag-caag---------------agtctgggatggacagtaatgggtggcccatgtccatgtggtcagtgagggcct------------catagaggaagtgacgttgaagctgagggctggaagaagagaaattgaccagtgcaaag
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           313003 101 +  18854210 AAGGAAAAGAAGAAAGCAAG---------------GCTCTGAGATGGGGAACAATGTGTGACCCAT---------GTGAGTGATGG---------------------AGGAGTGACAGTGAAACT--------------GAGAAGTGCACCAGTGCAAAG
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58101904 145 -  94987271 GAGGCAGGCAAGAAA-CAGAACTACAAGTGTTGGTGATCTAAGAAGGAGAATAGTGGGTGGCCCTTCCTAGAGTGATCAACCAAGGCCTATCCGGAAGTGACATCACGGAAGTGACATCACAGCT--------------GAGACATGCACCAGGACAAAG
i mm10.chr17               C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            26594 455 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e colAng1.NW_012115577v1     266986 1024 -   1829203 I
e manLeu1.NW_012107142v1     348062 2882 -    735854 T

a score=685221.000000
s hg38.chr6_GL000254v2_alt  1483836 78 +   4827813 acaggg-ggtagggagtGCATACAGATGCCCACACCTG-AGAAGTCTTGTTATATTTGAAGAATTTATC-ATTAGAGTTTG
s panTro5.chr6             30353257 78 + 175400573 acaggg-ggtagggagtGCATACAGATGCCCACACCTG-AGAAGTCTTGTTATATTTGAAGAATTTATC-ATTAGAGTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30587606 78 + 173848474 acaggg-ggtagggagtGCATACAGATGCCCACACCTG-AGAAGTCTTGTTATATTTGAAGAATTTATC-ATTAGAGTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     294697 78 +   2037526 acagga-ggtagggagtGCATACAGATGCCCACACCTG-AGAAGTCTTGTTATATTTGAAGAATTTATC-ATTAGAGTTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74961461 78 + 122973662 acaggg-ggtagggagtgcatgcagaTGCCCACACCtg-agaagtcttgttgtatttgaagaatttatc-attacagtttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30839750 78 + 172585720 acaggg-ggtagggagtgcatgcagaTGCCCACACCTG-ATAAGTCTTGTTATATGTGAAGAATTTATC-Attagagtttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30129232 78 - 170955103 acaggg-ggtagggagtgcatgcagaTGCCCACACCTG-ATAAGTCTTGTTATATGTGAAGAATTTATC-ATTAGAGTTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     378447 78 +   1495729 acaggg-ggtagggagtgcatgcagaTGCCCACACCTG-ATAAGTCTTGTTATATGTGAAGAATTTATC-ATTAGAGTTTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     480176 78 -    863181 acaggg-ggtagggagtgcatgcagaTGCCCACACCTG-ATAAGTCTTGTTATATGTGAAGAATTTATC-Attagagtttg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29629883 78 -  71996105 acgggg-ggtagggagtgcatgcagaTGTCCACACCTG-ATAAGTCTTGTTATATGTGAAGAATTTATC-Attaaagtttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     345180 78 -    735854 ACAGGG-GGTAGGGAGTGCATGCAGATGCCCACACCTG-ATAAGTCTTGTTATATGTGAAGAATTTATC-ATTAGAGTTTG
i manLeu1.NW_012107142v1   T 2882 C 0
s calJac3.chr4             30465520 79 + 171630274 actgggcggcagggagtgcatgcagTTGCCCACACCTG-GGAAGTCTTGTTATATTTGAAgaatttatc-attagaatttg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           274203 74 +    515838 aCTGAGCAGCAGGGAGTGCATGCAGATGCACATGCCTG-GGAA-----TTTATATTTGAAGAATTTATC-Attagagtttg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     903139 79 -   1771730 actgggtggcagggagtgcatGCAGATGCCCACGCCTG-GGAAGTCTTGTTATATTTGAAgaatttatc-attagagtttg
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           313104 80 +  18854210 ACTGGGAGGCAGGGAGCACATGCAGAAGCCCCAGCCCGCCGAAGTCTTGTTGCATTTGAAGAATTTATC-Attagagtttg
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58102049 79 -  94987271 ACGGGG-TGTGGGGAGCAGATGCAGAATCCAAGTCCAG-AGAAATCCTGTTACACTTGGAGAATTTATTAATCAGGGTTTG
i mm10.chr17               C 0 I 1069
e micMur3.chr6               333795 29247 + 123392446 I
e dasNov3.JH567297            26594 455 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e colAng1.NW_012115577v1     266986 1024 -   1829203 I

a score=220858.000000
s hg38.chr6_GL000254v2_alt  1483914 25 +   4827813 AATCGACAGGACTTACTGAGAGATT
s panTro5.chr6             30353335 25 + 175400573 AATCAACAGGACTTACTGAGAGATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30587684 25 + 173848474 AATCGACAGGACTTACTGAGAGATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     294775 25 +   2037526 AATCGACAGGACTTACTGATAGATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74961539 25 + 122973662 aatcgacaggacttactgacagatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30839828 25 + 172585720 aatcaacaggacttactgatagatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30129310 25 - 170955103 AATCAACAGGACTTACTGATAGATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     378525 25 +   1495729 AATCAACAGGACTTACTGATAGATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     480254 25 -    863181 aatcaacaggacttactgatagatt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29629961 25 -  71996105 aatcaacaggacttactgatagatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     345258 25 -    735854 AATCAACAGGACTTACTAATAGATT
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30465599 25 + 171630274 aatcgacaggacttactgatagatt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           274277 25 +    515838 agtcgacaggacttactgatagatt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     903218 25 -   1771730 aatcgacaggacttactgatagatt
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           313184 25 +  18854210 aatcaacaggatttactgataattt
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            26594 455 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e colAng1.NW_012115577v1     266986 1024 -   1829203 I

a score=14898.000000
s hg38.chr6_GL000254v2_alt  1483939 2 +   4827813 AG
s panTro5.chr6             30353360 2 + 175400573 AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30587709 2 + 173848474 AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     294800 2 +   2037526 AG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74961564 2 + 122973662 ag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30839853 2 + 172585720 ag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30129335 2 - 170955103 AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     378550 2 +   1495729 AG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     480279 2 -    863181 ag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29629986 2 -  71996105 ag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     345283 2 -    735854 AG
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     903243 2 -   1771730 ag
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           313209 2 +  18854210 ag
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            26594 455 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           274302 0 +    515838 C
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e calJac3.chr4             30465624 0 + 171630274 C
e colAng1.NW_012115577v1     266986 1024 -   1829203 I

a score=20274.000000
s hg38.chr6_GL000254v2_alt  1483941 7 +   4827813 AAGTGGG
s panTro5.chr6             30353362 7 + 175400573 AAGTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30587711 7 + 173848474 AAGTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     294802 7 +   2037526 AAGTGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74961566 7 + 122973662 aagtggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30839855 6 + 172585720 aagt-gg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30129337 6 - 170955103 AAGT-AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     378552 6 +   1495729 AAGT-AG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     480281 6 -    863181 aagt-gg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29629988 6 -  71996105 aagt-gg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     345285 6 -    735854 AAGT-GG
i manLeu1.NW_012107142v1   C 0 C 0
s otoGar3.GL873550           313211 7 +  18854210 aagtgag
i otoGar3.GL873550         C 0 I 278
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            26594 455 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           274302 0 +    515838 C
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e cebCap1.NW_016107755v1     903245 0 -   1771730 C
e calJac3.chr4             30465624 0 + 171630274 C
e colAng1.NW_012115577v1     266986 1024 -   1829203 I

a score=1730818.000000
s hg38.chr6_GL000254v2_alt  1483948 375 +   4827813 TTCtttgtaagaaaaaaacaaccccatcaaaaagtgggcaaaggatatgaacagacgcttctcaaaagaagacatttatgcaaccaacagacatatgaaaaaatgctcatcatcactggtctttagagaaatgcaaatcaaaaccacaatgagataccatctc-tgccagttagaatggcaatcattaaaaagtcagtaaacaacagattctggagacgaagtggagaaataggaacgcttttacactgttggtgggagtgtaaattagttcaaccattgtggaagacagtgtggtgattcctcaaggatctaaaaccagaaataccatttgacccagcaatcccattactgggtatatacccaaaggattataaa
s panTro5.chr6             30353369 375 + 175400573 TTCtttgtaagaaaaaaacaaccccatcaaaaagtgggcaaaggatatgaacagacgcttctcaaaagaagacatttatgcaaccaacagacatatgaaaaaatgctcatcatcactggtctttagagaaatgcaaatcaaaaccacaatgagataccatctc-tgccagttagaatggcaatcattaaaaagtcagtaaacaacagattctggagacgaagtggagaaataggaacgcttttacactgttggtgggagtgtaaattagttcaaccattgtggaagacagtgtggtgattcctcaaggatctaaaaccagaaataccatttgacccagcaatcctattactgggtatatacccaaaggattataaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30587718 375 + 173848474 TTCtttgtaagaaaaaaacaaccccatcaaaaagtgggcaaaggatatgaacagacgcttctcaaaagaagacatttatgcaaccaacagacatatgaaaaaatgctcatcatcactggtctttagagaaatgcaaatcaaaaccacaatgagataccatctc-tgccagttagaatggcaatcattaaaaagtcagtaaacaacagattctggagacgaagtggagaaataggaacgcttttacactgttggtgggagtgtaaattagttcaaccattgtggaagacagtgtggtgattcctcaaggatctaaaaccagaaataccatttgacccagcaatcctattactgggtatatacccaaaggattataaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     294809 374 +   2037526 TTCtttgtaagaaaaaaacaaccccatcaaaaagtgggcaaaggatatgaacagatgcttctcaaaagaagacatttatgcaaccaacagacatatgaaaaaatgctcatcatcactggtctttagagaaatgc-aatcaaaaccacaatgagataccatctc-tgccagttagaatggcaatcattaaaaagtcagtaaacaacagattctggagacgaagtggagaaataggaacgcttttacactgttggtgggagtgtaaattagttcaaccattgtggaagacagtgtggtgattcctcaaggatctaaaaccagaaataccatttgacccagcaatcccattactggggatatacccaaaggattataaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74961573 376 + 122973662 TTCtttgtaagaaaaaaacaaccccatcgaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcaaccaacaaacatatgaaaaaatgctcatcatcactggtctttagagaaatgcagatcaaaaccacaatgagataccatctcatgccagttagaatggcaatcattaaaaagtcagtaaacaacagattctggagatgaagtggagaaataggaatgcttttacactgttggtgggagtgtaaattagttcaaccattgtggaagacagtgtggcgattcctcaaggatctaaaaccagaaataccatttgacccagcaatccaattactgggtatatatccaaaggattataaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30839861 372 + 172585720 TTCtttgtaagaaaaaaacaaccccatcaaaaagtgggtgaaggatatgaacagatacttctcaaaagaagacatttatgtggccaacaaacatatgaaagaaagctcatcaccactggtcattacagaaatgtacacc-aaaccacaatgagatacaatttcacgccagttagaatggcgatcattaaaaagtcaggaaacaa---attctggagatgaagtggagaaataggaatgcttttacactgttggtgggagtgtaaattagttcaaccattgtggaagacagcgtggcgattcttcaaggacctagaaccagaaataccatttgacctagcaatctcattactgggtatatacccaaaggattataaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30129343 373 - 170955103 TTCtttgtaagaaaaaaacaaccccatcaaaaagtgggtgaaggatatgaacagatacttctcaaaagaagacatttatgtggccaacaaacatatgaaagaaagctcatcaccattggtcattacagaaatgtacatcaaaaccacagtgagatacaatttcatgccagttacaatggcgatcattaaaaagtcaggaaacaa---attctggagatgaagtggagaaataggaacgcttttacactgttggtgggagtgtaaattagttcaaccattgtggaagacagcgtggcgattcttcaaggacctagaaccagaaataccatttgacccagcaatcccattactgggtatatacccaaaggattataaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     378558 373 +   1495729 TTCtttgtaagaaaaaaacaaccccatcaaaaagtgggtgaaggatatgaacagatacttctcaaaagaagacatttatgtggccaacaaacatatgaaagaaagctcatcaccattggtcattacagaaatgtacatcaaaaccacagtgagatacaatttcatgccagttacaatggcgatcattaaaaagtcaggaaacaa---attctggagatgaagtggagaaataggaacgcttttacactgttggtgggagtgtaaattagttcaaccattgtggaagacagcgtggcgattcttcaaggacctagaaccagaaataccatttgacccagcaatcccattactgggtatatacccaaaggattataaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     480287 367 -    863181 TTCTTTGTAAGAA------aaccccatcaaaaagtgggtgaaggatatgaacagatacttctcaaaagaagacatttatgtggccaacaaacatgtgaaaaaaagctcatcaccactggtcattacagaaatgtacatcaaaaccataatgagatacaatttcatgccagttagaatggcgatcattaaaaagtcaggaaacaa---attctggagacgaagtggagaaataggaacgcttttgcactgttggtgggagtgtaaattagttcaacgattgtggaagacagcgtggcgattcttcaaggacctagaaccagaaataccatttgacccagcaattccattactgggtatatacccaaaggattataaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29629994 372 -  71996105 TTCtttattagaaaaaaacaaccccatcaaaaagtgggtgaaggatatgaacagatacttctcaaaagaagacatttatgtggccaacaaacatatgaaa-aaagctcatcaccactggtcattacagaaatgtacatcaaaaccacaatgagatacaatttcatgccagttagaatggcgatcattaaaaagtcaggaaacaa---attctggagatgaagtggagaaataggaatgcttttacactgttggtgggagtgtaaattagttcaaccattgtgaaatacagtgtggcgattcttcaaggacctagaaccagaaataccatttgacctagcaatcccattactgggtatatacccaaaggattataaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     345291 373 -    735854 TTCtttgtaagaaaaaaacaaccccatcaaaaagtgggtgaaggatatgaacagatacttctcaaaagaagacatttatgtggccaacaaacatatgaaagaaagctcatcaccactggtcattacagaaatgtacatcaaaaccacaatgagatacaatttcacgccagttagaatggcgatcattaaaaagtcaggaaacaa---attctggagatgaagtggagaaataggaacgcttttacactgttggtgggagtgtaaattagttcaaccattgtggaagacagcgtggcgattcttcaaggacctagaaccagaaataccatttgacccagcaatcccattactgggtatatacccaaaggattataaa
i manLeu1.NW_012107142v1   C 0 I 3767
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            26594 455 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           274302   0 +    515838 C
e otoGar3.GL873550           313218 278 +  18854210 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e cebCap1.NW_016107755v1     903245   0 -   1771730 C
e calJac3.chr4             30465624   0 + 171630274 C
e colAng1.NW_012115577v1     266986 1024 -   1829203 I

a score=1273209.000000
s hg38.chr6_GL000254v2_alt  1484323 325 +   4827813 tcattctactataaagacacatgcacacgtatgtttattgtggcatggttcacaatagcaaagacttggaaccaacccaaatgcccatcaatgatagactggataaagaaaatatggcacatatacaccatggaatactatgcagccataaaaacagatgagttcacgtcctttacagggacgtggatgaagatggaaaccatcattctcagcaaactaacacaagatcagaaaaccaaacaccacatgttctcactcgtaagtgagagttgaacaatgagaacacgtggacacagggaggggaatatcacacaccggggcctgt
s panTro5.chr6             30353744 325 + 175400573 tcattctactataaagacacatgcacacgtatgtttattgtggcatggttcacaatagcaaagacttggaaccaacccaaatgcccatcaacgatagactggataaagaaaatatggcacatatacaccatggaatactatgcagccataaaaacagatgagttcacgtcctttacagggacgtggatgaagatggaaaccatcattctcagcaaactaacacaatatcagaaaaccaaacaccacatgttctcactcgtaagtgagagttgaacaatgagaacacgtggacacagggaggggaatatcacacaccagggcctgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30588093 325 + 173848474 tcattctactataaagacacatgcacacgtatgtttattgtggcatggttcacaatagcaaagacttggaaccaacccaaatgcccatcaacgatagactggataaagaaaatatggcacatatacaccatggaatactatgcagccataaaaacagatgagttcacgtcctttacagggacgtggatgaagatggaaaccatcattctcagcaaactaacacaagatcagaaaaccaaacaccacatgttctcactcgtaagtgagagttgaacaatgagaacacgtggacacagggaggggaatatcacacaccggggcctgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     295183 324 +   2037526 tcattctactataaagacacatgcacacatatgtttattgtggcatggttcacaatagcaaagacttggaaccaacccaaatgcccatcaacgatagactggataaagaaaatacggcacatattcaccatggaatactatgcagccataaaaacagatgagttcacgtcctttgcagggacatggatgaagctggaaaccatcattctcagcaaactaacacaagaacagaaaaccaaacaccacatgttctcactcgtaagtgagagttgaacaatgagaacatgtggacacggggaggggaatatca-acaccggggcctgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74961949 324 + 122973662 tcatcctactataaagacacatgcacacgtatgtttactgtggcatggttcacaatagcaaagacttggagccaacccaaatg-ccgtcaatgatagactggataaagaaaatatggcacaaatacaccatggaatactatgcagccataaaaacggacgagttcacgtcctttgcagggacatggatgaagctggaaaccgtcattctcagcaaactaacataagaacagaaaaccaaacaccacatgttctcactcgtaagtggaagttgaacaatgagaacacatggacacagggaggggaacatcacacaccggggcctgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30840233 325 + 172585720 atattctactataaaaacacatgcacacgtatgtttattgcggcacagttcacaatagcaaagacttggaaccaacccaaatacccatcaacgatagactggataatgaaaatatggcacatatacaccatggaatactatgcagccataaaaacagatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcagtaaactaacacaagaacagaaaaccaaaccccacatgttctcactcgtatgtgggagctgaacaatgagaacacatggacacagggaggggaacatcacacaccagggcctgt
i rheMac8.chr4             C 0 I 8
s macFas5.chr4             30129716 325 - 170955103 atattctactataaaaacacatgcacacgtatgtttattgcggcacagttcacaatagcaaagacttggaaccaacccaaatacccatcaacgatagactggataatgaaaatatggcacatatacaccatggaatactatgcagccataaaaacagatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcagtaaactaacacaagaacagaaaaccaaaccccacatgttctcactcgtatgtgggagctgaacaatgagaacacatggacacagggaggggaacatcacacaccagggcctgt
i macFas5.chr4             C 0 I 8
s macNem1.NW_012012100v1     378931 325 +   1495729 atattctactataaaaacacatgcacacgtatgtttattgcggcacagttcacaatagcaaagacttggaaccaacccaaatacccatcaacgatagactggataatgaaaatatggcacatatacaccatggaatactatgcagccataaaaacagatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcagtaaactaacacaagaacagaaaaccaaaccccacatgttctcactcgtatgtgggagctgaacaatgagaacacatggacacagggaggggaacatcacacaccagggcctgt
i macNem1.NW_012012100v1   C 0 I 92
s cerAty1.NW_012002535v1     480654 325 -    863181 atattctactataaaaacacatgcacatgtatgtttattgcggcacagttcacaatagcaaagacttggaaccaacccaaatgcccatcaacgatagactggataatgaaaatatggcacatatacaccatggaatactatgcagccataaaaacagatgagttcatgtcctttgcagggacatgggtgaagctggaaaccatcattctcagtaaactaacacaagaacagaaaaccaaaccccacatgttctcactcgtatgtgggagctgaacaatgagaacacatggacacagggaggggaacatcacacaccagggcctgt
i cerAty1.NW_012002535v1   C 0 I 8
s chlSab2.chr17            29630366 325 -  71996105 atattctactataaaaacacatgcacatgtatgtttattgtggcacagttcacaatagcaaagacttggaaccaacccaaatgcccatcagtgatagactggataatgaaaatatggcacatatacaccatggaatactatgcagccataaaaacaaatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcagcaaactaacacaagaacagaaaaccaaaccccacatgttctcactcgtatgtgggagctgaacaatgagaacacatggacacagggaggggaacatcacacaccagggcctgt
i chlSab2.chr17            C 0 I 601
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            26594 455 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           274302   0 +    515838 C
e otoGar3.GL873550           313218 278 +  18854210 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e cebCap1.NW_016107755v1     903245   0 -   1771730 C
e calJac3.chr4             30465624   0 + 171630274 C
e colAng1.NW_012115577v1     266986 1024 -   1829203 I
e manLeu1.NW_012107142v1     345664 3767 -    735854 I

a score=67986.000000
s hg38.chr6_GL000254v2_alt  1484648 31 +   4827813 gaggggatgggggg-taggggagggatagcat
s panTro5.chr6             30354069 31 + 175400573 gagggggtggaggg-taggggagggatagcat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30588418 31 + 173848474 gagggggtggaggg-taggggagggatagcat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     295507 31 +   2037526 gaggggatgggggg-taggggagggatagcat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74962273 32 + 122973662 gaggggatggggggctaggggagggatagcat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30840566 31 + 172585720 cagggcatgggggg-taggggaaggatagcat
i rheMac8.chr4             I 8 I 37
s macFas5.chr4             30130049 31 - 170955103 cagggcatggtggg-taggggaaggatagcat
i macFas5.chr4             I 8 C 0
s cerAty1.NW_012002535v1     480987 31 -    863181 cagggcatgggggg-taggggaaggatagcat
i cerAty1.NW_012002535v1   I 8 I 47
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            26594 455 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           274302  0 +    515838 C
e otoGar3.GL873550           313218 278 +  18854210 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e cebCap1.NW_016107755v1     903245  0 -   1771730 C
e calJac3.chr4             30465624  0 + 171630274 C
e colAng1.NW_012115577v1     266986 1024 -   1829203 I
e manLeu1.NW_012107142v1     345664 3767 -    735854 I
e chlSab2.chr17            29630691 601 -  71996105 I
e macNem1.NW_012012100v1     379256 92 +   1495729 I

a score=93488.000000
s hg38.chr6_GL000254v2_alt  1484679 127 +   4827813 taggagaaatacctaacgtggatgacggtttgatgggtgcagcaaaccaccatggcacgtgtatacctatgtaacaaacctgcatgttctgtacatgtgccccagaacttaaagtataTATAT-TTTA
s panTro5.chr6             30354100 127 + 175400573 taggagaaatacctaacgtggatgacggtttgatgggtgcagcaaaccaccatggcacgtgtatacctatgtaacaaacctgcacgttctgtacatgtgccccagaacttaaagtataTATAT-TTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30588449 126 + 173848474 taggagaaatacctaacgtggatgacggtttgatgggtgcagc-aaccaccatggcacgtgtatacctatgtaacaaacctgcatgttctgtacatgtgccccagaacttaaagtataTATAT-TTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     295538 127 +   2037526 taggagaaatacctaacgtggatgatggtttgatgggtgcagcaaaccaccatggcacatgtatacctatttaacaaacctgcatgttctgtacatgtgccccagaacttaaagtataTATAT-TTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74962305 128 + 122973662 taggagaaatacctaacgtagatgacgggttgatggatgcagcaaaccaccatggcaagcgtatacccatgtaacaaacctgcatgttctgcacatgtgccccagaacttaaagtatatatataacaa
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30130080  38 - 170955103 ------------------------------------------------------acacacacacacacac---acacacacacac----------------------------acaTATATAT-----
i macFas5.chr4             C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            26594 455 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e saiBol1.JH378341           274302   0 +    515838 C
e otoGar3.GL873550           313218 278 +  18854210 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e cebCap1.NW_016107755v1     903245   0 -   1771730 C
e calJac3.chr4             30465624   0 + 171630274 C
e colAng1.NW_012115577v1     266986 1024 -   1829203 I
e manLeu1.NW_012107142v1     345664 3767 -    735854 I
e chlSab2.chr17            29630691 601 -  71996105 I
e cerAty1.NW_012002535v1     481018  47 -    863181 I
e macNem1.NW_012012100v1     379256  92 +   1495729 I
e rheMac8.chr4             30840597  37 + 172585720 I

a score=3090.000000
s hg38.chr6_GL000254v2_alt  1484806 2 +   4827813 AA
s panTro5.chr6             30354227 2 + 175400573 AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30588575 2 + 173848474 AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     295665 2 +   2037526 AA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74962433 2 + 122973662 aa
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30465624 2 + 171630274 aa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           274302 2 +    515838 ag
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            26594 455 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           313218 278 +  18854210 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e cebCap1.NW_016107755v1     903245 0 -   1771730 C
e colAng1.NW_012115577v1     266986 1024 -   1829203 I
e manLeu1.NW_012107142v1     345664 3767 -    735854 I
e chlSab2.chr17            29630691 601 -  71996105 I
e cerAty1.NW_012002535v1     481018 47 -    863181 I
e macNem1.NW_012012100v1     379256 92 +   1495729 I
e macFas5.chr4             30130118 0 - 170955103 C
e rheMac8.chr4             30840597 37 + 172585720 I

a score=7896.000000
s hg38.chr6_GL000254v2_alt  1484808 3 +   4827813 AAG
s panTro5.chr6             30354229 3 + 175400573 AAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30588577 3 + 173848474 AAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     295667 3 +   2037526 AAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74962435 3 + 122973662 aaG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30465626 3 + 171630274 aag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           274304 3 +    515838 aag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     903245 3 -   1771730 aag
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            26594 455 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           313218 278 +  18854210 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e colAng1.NW_012115577v1     266986 1024 -   1829203 I
e manLeu1.NW_012107142v1     345664 3767 -    735854 I
e chlSab2.chr17            29630691 601 -  71996105 I
e cerAty1.NW_012002535v1     481018 47 -    863181 I
e macNem1.NW_012012100v1     379256 92 +   1495729 I
e macFas5.chr4             30130118 0 - 170955103 C
e rheMac8.chr4             30840597 37 + 172585720 I

a score=4547128.000000
s hg38.chr6_GL000254v2_alt  1484811 621 +   4827813 Tgggttgaaggaaggaggaaggtcaaagatgacttcatgagtttctggtttgagaaactgaatagatgatgtgaaagataataacttggtagaacaggtttgaatgcaacaccaagagtttcatttaagacaagttgagtccaagttgagacacatcaaaataggatcttacatatgcagctggatcacaaatttagatctccagagtcttattcctagaacctagaacaaagatccatccagacaaagacaatatttaaatccaagaaaagcgggcacggtggctcacacctgtagtcccagcactttgggaggccaaagtgggaggatcgcttgagcccaggagttcaagaccag----cttaggcaacacagtgagatactatctctagaacaacaacagcaacaacaaagtgaaattaacaggattt----aaaaa------------------aaagaacgtgacaatttggggctgggtgcagtggctcacgcctgtggtcccagctacttggaaggttgaggtgggaggattgcttgagcccaagagagtgaggc----tggagtgagctgtgattgtaccactgcactgcagccaggaagacagagcaagaccctgtctcaaacaaagaaacaaacaaccaag
s panTro5.chr6             30354232 621 + 175400573 Tgggttgaaagaaggaggaaggtcaaagatgacttcatgagtttctggtttgagaaactgaatagatgatgtgaaagataataacttggtagaacaggtttgaatgcaacaccaagagtttcatttaagacaagttgagtccaagttgagacacatcagaataggatcttacatatgcagctggatcacaaatttagatctccagagtcttattcctagaacctagaacaaagatccatccagacaaagacaatatttaaatccaagaaaagtgggcacggtggctcacacctgtagtcccagcactttgggaggccaaagtgggaggatcgcttgagcccaggagttcaagaccag----cttaggcaacacagtgagatactatctctagaacaacaacagcaacaacaaagtgaaattaacaggattt----aaaaa------------------aaagaacatgacaatttggggctgggtgcagtggctcacgcctgtggtcccagctacttggaaggttgaggtgggaggattgcttgagcccaagagagtgaggc----tggagtgagctgtgattgtaccactgcactgcagccaggaacacagagcaagaccctgtctcaaacaaagaaacaaacaaccaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30588580 621 + 173848474 Tgggttgaaagaaggaggaaggtcaaagatgacttcatgagtttctggtttgagaaactgaatagatgatgtgaaagataataacttggtagaacaggtttgaatgcaacaccaagagtttcatttaagacaagttgagtccaagttgagacacatcaaaataggatcttacatatgcagctggatcacaaatttagatctccagagtcttattcctagaacctagaacaaagatccatccagacaaagacaatatttaaatccaagaaaagtgggcacggtggctcacacctgtagtcccagcactttgggaggccaaagtgggaggatcgcttgagcccaggagttcaagaccag----cttaggcaacacagtgagatactatctctagaacaacaacagcaacaacaaagtgaaattaacaggattt----aaaaa------------------aaagaacgtgacaatttggggctgggtgcagtggctcacgcctgtggtcccagctacttggaaggttgaggtgggaggattgcttgagcccaagagagtgaggc----tggagtgagctgtgattgtaccactgcactgcagccaggaagacagagcaagaccctgtctcaaacaaagaaacaaacaaccaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     295670 621 +   2037526 Tgggttgaaggaaggaggaaggtcaaagacgacttcatgagtttctggtttgagaaactgaatagatgatgtgaaagataataacttggtagaacaggtttgaatgcaacaccaagagtttcatttaagacaagctgagtccaagttgagacacatcgaaataggatcttacatacgcagctggatcacaaatttagatctccagagtcgtattcctagaacctagaacaaagatccatccagacaaagacaatatttaaatccaagaaaagtgggcacggtggctcacacctgtagtcccagcactttgggaggccaaagtgggaggatcacttgagcccaggagttcaagaccag----cttaggcaacacagtgagatactatctctagaacaataacagcaacaacaaagtgaaattaacaggattt----aaaaa------------------aaagaacgtgacaatttggggctgggtgcagtggctcacgcctgtggtcccagctacttggaaggttgaggtgggaggattgcttgagcccaagagagtgaggc----tggagtgagctgtgattgtaccactgcactgcagccaggaagacagagcaagaccctgtctcaaacaaagaaacaaacaaccaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74962438 620 + 122973662 TAGGTtgaaggaaggaggaaggtcaaagatgacttcatgagtttctggtttgagaaactgaatagatgatgtgaaagataagaacttggtagaacaggtttgaatgcaacaccaagagtttcattt-agacaagttgagtccaagttgagacacatcaaaacaggatcttacatacgcagctggatcacaaatttagatctccagagtcgtattcctagaacctagaacaaagatccatcaggacaaagacaatatttaaatccaagaaaagtgggcatggtggctcacacctgtagtcccagcactttgggaggccaaagtgggaggatcacttgagcctaggagttcaagaccag----cttaagcaacacagtgagatactatctctagaacaacaacaacaacaataaagtgaaattaacaggattt----taaaa------------------aaataacgtgacaatttggggctgggtgcagtggctcacgcctgtagtcccagctacttggaaggttgaggtgggaggattgcttgagcccaagagagtgagac----tggagtgagctgtgattgtaccactgcactgcagccaggaagacagagcaagaccctgtctcaaacaaagaaacaaacaaccaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30840634 612 + 172585720 Tgggttgaaggaaagaggaaggtcaaaaatgacttcatgagtttctggcttgagaaactgaatggatgatgtgaaagataagaacttggtagaacaggtttgaatgcaacaccaagagtttcattcaagacaatttgagtccaagttgagatacatcaaaataggatcttacatatgcagctggatcacaaatttagatctccagagtcatattcctagaacctcgaacaaagatccatcaggacaaagacgatatttaaatccaaggaaagtgcgcacggtggctcacacctgtaatcccagcactttgggaagccaaagtgggaggatcgcttgagcccaggagttcaagaccagcacacttaggcaacacagtgagacactatctctagaacaa------caacaacaaagtgaaattaacaggattt----aaaaa------------------aaagaatgtgacaatttggggctgggtgcagtggctcacgcctgtagtcccagctacttggaaggttgaggtgggaggattgtttgagccgaagagagtgaggc----tgcagtgagctgtgattgtaccactgcactgcagtcaggacgacagagcaagaccctgtctcaagcaaagaaacaaac-------
i rheMac8.chr4             I 37 C 0
s macFas5.chr4             30130118 611 - 170955103 -gggttgaaggaaaaaggaaggtcaaaaatgacttcatgagtttctggcttgagaaactgaatggatgatgtgaaagataagaacttggtagaacaggtttgaatgcaacaccaagagtttcattcaagacaatttgagtccaagttgagatacatcaaaataggatcttacatatgcagctggatcacaaatttagatctccagagtcatattcctagaacctcgaacaaagatccatcaggacaaagacaatatttaaatccaaggaaagtgcgcacggtggctcacacctgtaatcccagcactttgggaggccaaagtgggaggatcgcttgagcccaggagttcaagaccagcacgcttaggcaacacagtgagacactatctctagaacaa------caacaacaaagtgaaattaacaggattt----aaaaa------------------aaagaatgtgacaatttggggctgggtgcagtggctcacgcctgtagtcccagctacttggaaggttgaggtgggaggattgtttgagccgaagagagtgaggc----tgcagtgagctgtgattgtaccactgcactgcagccaggacgacagagcaagaccctgtctcaagcaaagaaacaaac-------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     379348 612 +   1495729 Tgggttgaaggaaaaaggaaggtcaaaaatgacttcatgagtttctggcttgagaaactgaatggatgatgtgaaagataagaacttggtagaacaggtttgaatgcaacaccaagagtttcattcaagacaatttgagtccaagttgagatacatcaaaataggatcttacatatgcagctggatcacaaatttagatctccagagtcatattcctagaacctcgaacaaagatccatcaggacaaagacaatatttaaatccaaggaaagtgcgcacggtggctcacacctgtaatcccagcactttgggaggccaaagtgggaggatcgcttgagcccaggagttcaagaccagcacgcttaggcaacacagtgagacactatctctagaacaa------caacaacaaagtgaaattaacaggattt----aaaaa------------------aaagaatgtgacaatttggggctgggtgcagtggctcacgcctgtagtcccagctacttggaaggttgaggtgggaggattgtttgagccgaagagagtgaggc----tgcagtgagctgtgattgtaccactgcactgcagtcaggacgacagagcaagaccctgtctcaagcaaagaaacaaac-------
i macNem1.NW_012012100v1   I 92 C 0
s cerAty1.NW_012002535v1     481065 612 -    863181 Tgggttgaaggaaagaggaaggtcaaaaatgacttcatgagtttctggcttgagaaactgaatggatgatgtgaaagataagaacttggtagaacaggtttgaatgcaacaccgagagtttcattcaagacaagttgagtccaagttgagatacatcaaaataagatcttacatatgcagctggatcacaaatttagatctccagagtcatattcctagaacctagaacgaagatccatcaggtcaaagacaatatttaaatccaaggaaagtgcgcacggtggctcacacctgtaatcccagcactttgggaagccaaagtgggaggattgcttgagcccaggagttcaagaccagcacgcttaggcaacacagtgagacactatctctagaacaa------caacaacaaagtgaaattaacaggattt----aaaaa------------------aaagaatgtgacaatttgaggctgggtgcagtggctcacacctgtagtcccagctacttggaaggttgaggtgggaggattgtttgagccgaagagagtgaggc----tgcagtgagctgtgattgtaccactgcactgcagccaggacgacagagcaagaccctgtctcaagcaaataaacgaac-------
i cerAty1.NW_012002535v1   I 47 C 0
s manLeu1.NW_012107142v1     349431 613 -    735854 Tgggttgaaggaaagaggaaggtcaaaaatgacttcatgagtttctggcttgagaaactgaatggatgatgtgaaagataagaacttggtagaacaggtttgaatgcaacaccgagagtttcattcaagacaagttgagtccaagttgagatacatcaaaataggatcttacatatgcagctggatcacaaatttagatctccagagtcatattcctagaacctagaacaaagatccatcaggacaaagacaatatttaaatccaaggaaagtgcgcacagtggctcacacctgtaatcccagcactttgggaagccaaagtgggaggatcgcttgagcccaggagttcaagaccagcacacttaggcaacacagtgagacactatctctagaacaa------caacaacaaagtgaaattaacaggattt---aaaaaa------------------aaagaatgtgacaatttggggctgggtgcagtggctcacgcctgtagtcccagctacttgaaaggttgaggtgggaggattgtttgagccgaagagagtgaggc----tgcagtgagctgtgattgtaccactgcactgcagtcaggacgacagagcaataccctgtctcaagcaaagaaacaaac-------
i manLeu1.NW_012107142v1   I 3767 C 0
s colAng1.NW_012115577v1     268010 615 -   1829203 tgggttgaaggaaagaggaaggtcaaagatgacttcatgagtttctggcttgagaaactgaatggatgatgtgaaagataagaacttggtagaacaggtttgaatgcaacaccaagagtttcattcaagacaagttgagtccaagttgagatacatcaaaataggatcttacatatgcagctggatcacaaatttagatctcc-tagtcatattcctagaacctagaacaaagatccatcaggacaaagacaatatttaaatccaaggaaagtgggcacggtggctcacacctgtaatcctagcactttgggaagccaaagtgggaggatcgcttgagcccaggagttcaagaccagtgcgcttaggcaacacagtgagatactatctctagaacag------caacaacaaagtgaaattaacaggattt----aaaaa------------------aaagaatgtgacaatttggggctgggtgcagtggctcacgcctgtagtcccagctacttggaaggttgaggtgggaggattgcttgagcccaagagagtgaggctgcatgcagtgagctgtgattttaccactgcactgcagccaggacgacagagcaagaccctgtctcaagcaaagaaacaaac-------
i colAng1.NW_012115577v1   I 1024 C 0
s calJac3.chr4             30465629 604 + 171630274 tggattgaaggaaggaggagggtcaaagacaatttcatgagtttctggtttgagaaactgagtgaatgatgtgaaagacaagaacttggtagaacacgtttgaatgcaacatcaagaatttcattcaagacaaattgaatccaagttgagacacatcaaaacaggatcttagatatgcaactggatcacaaagctatatctccagagtcatattcctagaacctagaacaaagatccatcaggacaaagacaatatttaaatccaaggaaagtgggcacagtggctcatacctgtaatcccagcactttgggagcctgaagtggaaggatctcttgagcccaggaattcaagaccag----cttaggcaacagtgtgagacactatctttacaacaa------caacaatgaagtgaaattagcaggatttaaaaaaaaa------------------aaaggacttgacaatttggggctgggtgcagtggttcatgcctgtagtcccagctacttggaaggctgaggtgggaggattgctggagcccaggagagtgtggc----tgcagtgagctgtgattttaccactgcactgcacccaggacgacagaacaagaccctgtctca---------------aaccaag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           274307 610 +    515838 tgaattgaaggaaggaggagggtcaaagacaacttcatgagtttctggtttgagaaactgagtggatgatgtgaaagataagaacttggtagaacaggtttgaatgcaacatcaagagtttcattcaagacaaattgagtccaagttgagacacatgaaaataggatcttagatatgcaactggatcacaaagctgtatctccacagtcatattcctagaacctagaacaaagatccatcaggacaaagacaatatttaaatccaaggaaagtgggcacagtggcttatacctataatcacagcactttgggaggctgaaatggaaggatctcttgagcccaggaactcaagacaag----cttaggcaacagcgtgagacactgtctctgcaaaaa------caacaatgaagtgaaattagcagaattt---------ttttttt-----------aaaggacttgacaatttggggctgggtgcaatggctcatgcctgtagtctcagctacttggaaggct-------gaggattgctggagcccaggagagtgaggc----tggagtgagctgtgactttaccactgcactgcacccaggatgacagagcaagaccttgtctcaaataaagaaacagacaaccaag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     903248 622 -   1771730 tggattgaaggaaggaggggggtcaaagacaatttcatgagtttctggtttgagaaactgagtggatggtgtgaaagataagaacttggtagaacaggtttgaatgcaacatcaagagtttcattcaagacaaattgagtccaagttgagacacatcaaaataagatcttagatatgcaactggatCACAAAGCTATATCTCCAGAGTCATATTCCTAGAACCTAGAACAAAGATACATCAGGACAAAG--AATATTTAAATGCAAGGAAAGTAggcacagtggctcatacctgtaatcctagcactttgggaggctgaagtggaaagatctcttgagcccaggaattcaagaccag----cttagccaacagcgtaagacactgtc--tacaacaa------caacaatgaagtgaaattagcaggATTT---------TTTTTTTTTTTTTGAAAAAAAGGACTTGACAATTTGGGGCTgcgtgcagtggctcatgcctgtaatcccagctacttggaaggctgaggtgggaggattgctggagctcaggagagtgaggc----tgcagtgagctgtgattttaccactgcactgcacccagggtgacagagcaagaccctgtctcaaataaagaaaCAC--AACCAAG
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            26594 455 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           313218 278 +  18854210 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e chlSab2.chr17            29630691 601 -  71996105 I

a score=319509.000000
s hg38.chr6_GL000254v2_alt  1485432 42 +   4827813 aaaccaaggaaactgatgtaattgcctc-aaaagaggctagac
s panTro5.chr6             30354853 42 + 175400573 aaaccaaggaaactgatgtaattgcctc-gaaagaggctagac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30589201 42 + 173848474 aaaccaaggaaactgatgtaattgcgtc-gaaagaggctagac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     296291 42 +   2037526 aaaccaaggaaactgatgtaattgcctc-aaaagaggctagac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74963058 42 + 122973662 aaaccaaggaaattgatgtaattgcctc-aaaagaggctagac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30841246 41 + 172585720 -aaccaaggaaattgatgtaatagcctc-aaaagaggctagac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30130729 41 - 170955103 -aaccaaggaaattgatgtaatagcctc-aaaagaggctagac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     379960 41 +   1495729 -aaccaaggaaattgatgtaatagcctc-aaaagaggctagac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     481677 41 -    863181 -aaccaaggaaattgatgtaatagcctc-aaaagaggctagac
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     350044 41 -    735854 -aaccaaggaaattgatgtaatagcctc-aaaagaggctagac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     268625 41 -   1829203 -aaccaaggaaattgatgtaatagcctc-aaaagaggctagac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30466233 39 + 171630274 aaaccaagg-aattgatgta--agcctc-aaaagaggctagac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           274917 41 +    515838 aaaccaagg-aattgatgtaatagcctc-aaaagaggctagac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     903870 41 -   1771730 AAACCAAGG-AATTGATGTAATAGCCTC-AAAAGAGGCTAGAC
i cebCap1.NW_016107755v1   C 0 C 0
s dasNov3.JH567297            27049 43 +     53444 aatccaagggtaccggtgtcacatccttggagagagtcgagag
i dasNov3.JH567297         I 455 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e otoGar3.GL873550           313218 278 +  18854210 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e chlSab2.chr17            29630691 601 -  71996105 I

a score=212417.000000
s hg38.chr6_GL000254v2_alt  1485474 23 +   4827813 agaaaagaagttttggggtaagg
s panTro5.chr6             30354895 23 + 175400573 agaaaagaagttttggggtaagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30589243 23 + 173848474 agaaaagaagttttggggtaagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     296333 23 +   2037526 agaaaagaagttttggggtaagt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74963100 23 + 122973662 agaaaagaagttttggggtaagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30841287 23 + 172585720 agaaaagaagttttggggcaagt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30130770 23 - 170955103 agaaaagaagttttggggcaagt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     380001 23 +   1495729 agaaaagaagttttggggcaagt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     481718 23 -    863181 agaaaagaagttttggggcaagt
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     350085 23 -    735854 agaaaagaagttttggggcaagt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     268666 23 -   1829203 agaaaagaagttttggggcaagt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30466272 23 + 171630274 agaaaagaagtttcagggtaagt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           274958 23 +    515838 agaaaagaagtttcagggtaagg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     903911 23 -   1771730 agaaaagaagtttcagggtaagg
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           313496 23 +  18854210 aggaaagaagttctgggacaaga
i otoGar3.GL873550         I 278 C 0
s dasNov3.JH567297            27092 23 +     53444 agcaaagaagctccagggcaggg
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e aotNan1.NW_018496901v1      78592 2215 -    486031 M
e chlSab2.chr17            29630691 601 -  71996105 I

a score=902525.000000
s hg38.chr6_GL000254v2_alt  1485497 90 +   4827813 ttctgggaaaggccgtcatttagatgtaggcagaggaggacccagcaaaggagac--aggatg-agttgcc--agaaaggcaggagaaaaacaag
s panTro5.chr6             30354918 90 + 175400573 ttctgggaaaggccgtcatttagatgtaggcagagaaggacccagcaaaggagac--aggatg-agttgcc--agaaaggcaggagaaaaacaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30589266 90 + 173848474 ttctgggaaaggccgtcatttagatgtaggcagagaaggacccagcaaaggagac--aggatg-agttgcc--agaaaggcaggagaaaaacaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     296356 90 +   2037526 ttctgggaaaggccgtcatttagatgtaggcagaggaggacccagcaaaggagac--aggatg-agttgcc--agaaaggcaggagaaaaacaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74963123 89 + 122973662 ttctgggaaaggccgtcatttaaatgtaggcag-ggaggatccagcaaaggagac--aggatg-agttgcc--agaaaggcaggagaaaaacaag
i nomLeu3.chr1a            C 0 M 869
s rheMac8.chr4             30841310 90 + 172585720 ttctgggaaaggctgtcatttagatgtaggcagaggaggacccagcaaaggagac--agaatg-agttgtc--agaaaggcaggagaaaaacaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30130793 90 - 170955103 ttctgggaaaggctgtcatttagatgtaggcagaggaggacccagcaaaggagac--agaatg-agttgtc--agaaaggcaggagaaaaacaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     380024 90 +   1495729 ttctgggaaaggctgtcatttagatgtaggcagaggaggacccagcaaaggagac--agaatg-agttgtc--agaaaggcaggagaaaaacaag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     481741 90 -    863181 ttctgggaaaggctgtcatttagatgtaggcagaggaggacccagcaaaggagac--aggatg-agttgtc--agaaaggcaggagaaaaacaag
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     350108 90 -    735854 ttctgggaaaggctgtcatttagatgtaggcagaggaggacccagcaaaggagac--agaatg-agttgtc--agaaaggcaggagaaaaacaag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     268689 90 -   1829203 ttctgagaaaggctgtcatttagatgtaggcagaggaggacccagcaaaggagac--aggatg-agttgtc--agaaaggcaggagaaaaacaag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30466295 91 + 171630274 ttctgggaaatgccatcatttagatgcaggtagaggagga-ccagcaaagaagacatagggtg-agttgcc--agaaaggcagaagaaaaacaag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           274981 91 +    515838 ctctgggaaaggccgtcatttagatgtaggtagaggagaa-ccagcaaagaagacgtaggatg-agttgcc--acaaaggcagaagaaaaacaag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     903934 87 -   1771730 ttctgggaaaggctgtcatttagat----gtagaggagaa-ccagtaaagaagatgtaggatg-agttacc--agaaaggcagaagaaaaacaag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      80808 91 -    486031 TTCTGGGAACAGccgacatttagatgtaggtagaggagaa-ccagcaaagaagacatgggatg-agttgcc--agaaaggcagaagaaaaacaag
i aotNan1.NW_018496901v1   M 2215 C 0
s otoGar3.GL873550           313519 94 +  18854210 ttctgggaaaggccatgattcagatgtagggagaggaggacgcagcaaaggagacttaggata-aactgccaaaaaaaggcaggagtaaaataag
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            27115 90 +     53444 tcctgagaaaggccgtcacttagacgtggacagaggaggagccagcacagg-gac--tggacgtggcctcc--agaaaggcagttgggaaatgag
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e chlSab2.chr17            29630691 601 -  71996105 I

a score=1373956.000000
s hg38.chr6_GL000254v2_alt  1485587 168 +   4827813 gggaat---ggtgccccagctgctaagagagaagggtattttaagagattataatagattgcattgaacaatgcta-acac----ttcagtaagatggtggcagagGCATGAGAGctgagttgggaggaggcacatttcttccatag---taataacagggaacaagagaaggtgtctg
s panTro5.chr6             30355008 168 + 175400573 gggaat---ggtgccccagctgctaagagagaagggtattttaagagattataatagattgcattgaacgatgcta-acac----ttcagtaagatggtggcagagGCATGAGAGctgagttgggaggaggcacacttcttccatag---taataacagggaacaagggaaggtgtctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30589356 168 + 173848474 gggaat---ggtgccccagctgctaagagagaagggtattttaagagattataatagattgcattgaacgatgcta-acac----ttcagtaagatggtggcagagGCATGAGAGctgagttgggaggaggcacacttcttccatag---taataacagggaacaagggaaggtgtctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     296446 168 +   2037526 gggaat---ggtgccccagctgctaagagagaagggtattttaagagattataatagattgcattgaacgatgcta-acac----ttctgtaagatggtggcagagGCATGAGAGctgagttgggaggaggcacacttcttccatag---taataacagggaacaagagaaggtgtctg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30841400 168 + 172585720 gggaat---ggtgttccagttgctaagagagaagggtattttaagagatgacaatagattgcattgaacgatggta-acac----ttcagtaagatggtggcagagGCATGAGAGCTGGGTTGTgaggaggcacacttcttccatag---taataacagcaaacaagagaaggtgtctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30130883 168 - 170955103 gggaat---ggtgtcccagttgctaagagagaagggtattttaagagatgacaatagattgcattgaacgatggta-acac----ttcagtaagatggtggcagagGCATGAGAGCTGGGTTGTGAGGAGGCACACTTCTTCCATAG---TAATAACAGCAAACAAGAGAAGGTGTCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     380114 168 +   1495729 gggaat---ggtgtcccagttgctaagagagaagggtattttaagagatgacaatagattgcattgaacgatggta-acac----ttcagtaagatggtggcagagGCATGAGAGCTGGGTTGTgaggaggcacacttcttccatag---taataacagcaaacaagagaaggtgtctg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     481831 168 -    863181 gggaat---ggtgtcccagttgctaagagagaagggtattttaagagatgacaatagattgcattgaacgatggta-acat----ttcagtaagatggtggcagagGCATGAGAGCTGGGTTGTgaggaggcacacttcttccatag---taataacagcaaataagagaaggtgtctg
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     350198 168 -    735854 gggaat---ggtgttcgagttgctaagagagaagggtattttaagagatgacaatagattgcattgaacgatggta-acat----ttcagtaagatggtggcagaggcatgagagctggattGTgaggaggcacacttcttccatag---taataacagcaaataagagaaggtgtctg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     268779 168 -   1829203 gggaat---ggcgtcccagttgctaagagagaagggtattttaagagatgacaatagattgcactgaacgatggta-acac----ttcagtaagatggtggcagagGCATGAGAGCTGGGTTGTgaggaggcacacttcttccatag---taataacagcaaacaagagaaggtgtctg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30466386 178 + 171630274 ggtaatggaggagtcccaattgccaagatagaagggtattttaagagatgacaatagattgcattgaatgattcta-atttattattcagtaaggtgGTGGTAGAGGCATGggagctgggttgagaggaggcacacttcttccatagtaataataatagggaacaagggaaggtgtctg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           275072 168 +    515838 ggtaat---ggagccccaattgctaagagagaagggtattttaagagatgacaatagattgcattgaactatgcta-atac----ttcagtaaggtggtggcagagGCATGggagctgggttgagaggaggcacacttcttccatag---taataatagggaacaagagaaggtgtctg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     904021 168 -   1771730 ggtaat---ggagccgcaattgctaagagagaagggtattttaagcgatgacaatagattgcattgaacgatgcta-atac----ttcagtaaggtggtggcagagGCATGggagctgggttgagaggaggcacacttcttccatag---taataatagggaacaagagaaggtgtctg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      80899 168 -    486031 ggtaat---ggagtcccaattgctaagacagaagggtattttaagagatgacaatagattgcattgaatgatgcta-atac----ttcagtaaggtggtggcagagGCATGggagctgggttgagaggaggcacacttcttccatag---tagtaatagggaacaagagaaggtgtctg
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           313613 142 +  18854210 gggagt---ggt-----------------------atattttaagaagggataatagattgtgctgaatgatgctgtacac-------agtaagatgatggcagagaagtgaaccattgACCGGGAGGAGATACACTG-TATCATTA---TAACAGCAGGGAACAAAAGGAGGTGTCTG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            27205 159 +     53444 gggtgt---ggtgaccccgacaatgagagagaggag--tttcaggaagggaaggtaga--gggttgaatggtgctg-CGCA----GCCCGCAAGATGGTGGCAGGGCAGTGGACACTCGGATGGAAGGAGG-----GTGTAAAACAT---TAGAAAGAGAGGAGAAGGGGTGGTGTGTG
i dasNov3.JH567297         C 0 I 22
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e chlSab2.chr17            29630691 601 -  71996105 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=1215981.000000
s hg38.chr6_GL000254v2_alt  1485755 160 +   4827813 caagcctacatagttttgcagttttggaagtccaggttt---tgttctggtttttattttctc-ata----atatttgaggaaggaacatcagcagtatgggt-gggatcaggatggatgtgaaaggtttgaaaagaaacaagatggtgtgatgcagtgtgggagagcg--
s panTro5.chr6             30355176 160 + 175400573 caagcctacatagttttgcagttttcgaaatccaggttt---tgttctggtttttattttctc-ata----atgtttgaggaaggaacatcagcagtatgggt-gggatcaggatggatgtgaaaggtttgaaaagaaacaagatggtgtgatgcagtgtgggagagcg--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30589524 160 + 173848474 caagcctacatagttttgcagttttcgaaatccaggttt---tgttctggtttttattttctc-ata----atatttgaggaaggaacatcagcagtatgggt-gggatcaggatggatgtgaaaggtttgaaaagaaacaagatggtgtgatgcagtgtgggagagcg--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     296614 160 +   2037526 caagcctacacagttttgcagttttggaaatccagattt---tgttctggtttttattttctc-ata----atatttgaggaaggaacatcagcagtatgggt-gggatcaggatggatgtgaaaggtttgaaaagaaacaagatggtgtgatgcagtgtgggagagcg--
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30841568 161 + 172585720 caagcatacgtagttttgcagttttggaaatgcaggttt---tgttctggtttttattttctcaata----atatgtgaggaaggaacatcagcagtatgggt-gggatcaggatggatgcgaaaggtttgaaaagaaagaagatggtgtgatgcagtgtgggatagtg--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30131051 161 - 170955103 CAAGCATACGTAGTTTTGCAGTTTTGGAAAtgcaggttt---tgttctggtttttattttctcaata----atatgtgaggaaggaacatcagcagtatgggt-gggatcaggatggatgcgaaaggtttgaaaagaaagaagatggtatggtgcagtgtgggatagcg--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     380282 161 +   1495729 caagcatacgtagttttgcagttttggaaatgtaggttt---tgttctggtttttattttctcaata----atatgtgaggaaggaacatcagcagtatgggt-gggatcaggatggatgcgaaaggtttgaaaagaaagaagatggtatggtgcagtgtgggatagtg--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     481999 161 -    863181 caagcatatgtagttttgcagttttggaaatgcaggttt---tgttctggtttttattttctcaata----atacgtgaggaaggaacatcagcagtatgggt-gggatcaggatggatgcgaaaggtttgaaaagaaagaagatggtgtgatgcagtgtgggatagcg--
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     350366 161 -    735854 caagcatatgcagttttgcagttttggaaatgcaggttt---tgttctggtttttattttctcaata----atatgtgaggaaggaacatcagcagtatgggt-gggatcaggatggatgcgaaaggtttgaaaagaaagaagatggtgtgatgcagtgtgggatagcg--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     268947 160 -   1829203 caa-catatgtagttctgcagttttggaaatgctggttt---tgttttggtttttattttctcaata----atatgtgaggaaggaacatcagcagtatgggt-gggatcaggatggatgtgaaaggtttgaaaagaaagaagatggtgtgatgccgtgtgggatagcg--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30466564 160 + 171630274 caagtgtacgtaattttgcagttttggaaatgcaggttt---tgttctggtttttattttctcagta----gtaagtgaggagagagcatcagcagtatgggt-gaggtcaggatggatgtgaaaggtttgaaaaga---aagatggtgtgatgcagtgtgggagagtgaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           275240 156 +    515838 caagt----gtagttttgcagttttggaaatgcaggttt---tgttctggtttttattttctcagta----ggaaggaaagaaggagcatcagcagtatgggt-gaggtcaggatggatgtgaaaggtttgaaaaga---aagttggtgtgatgtagtgtgggagagtgaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     904189 160 -   1771730 caagtgtacgtagttttgtggttttggaaatgcaggttt---ggttctggtttttattttctcagta----gtaagtgaggagggagcatcagcagtatgggt-gaggtcaggatggatgtgaaaggtctgaaaaga---aagatggtgtgatgtagtgtgggagagtgaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      81067 160 -    486031 caagtgtacgtagttttgcagttttggaaatgcaggttt---tgttctggtttttattttctcagta----gtaagtgagaagggagcatcagcagtgtgggt-aaggtcaggatggatgtgaaaggtttgaaaaga---aagatggtgtgatgtagtctgggagagtgaa
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           313755 164 +  18854210 CAAGTGGAAGGAATTTTGCAGTTTTGGAGAT---AGTTTGGGTGTTCTGGGTTTTATTTTCTCAATAATATATATGTGAGGAAGGAACCTTCCCAGTGTGGGTAGAAATC----TGGATGTGAAAGGTTTGAAAAGAGAGATGACTATGTGATATAGCTTGGAAAAGTGAA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27364  22 +     53444 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e chlSab2.chr17            29630691 601 -  71996105 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=2615480.000000
s hg38.chr6_GL000254v2_alt  1485915 346 +   4827813 cttacaagagaaactatgtagggttggcagacagtatgtagcaccaatttgaggtctgaaatg------tttaacatgtttcaggaggctgcctgaggacagacagcaaacaagaaggtgatggtacatttta-ccatggataaggagttgtctgaaaagtaacacagagagggag-ggtaagggagttgagtatatttctgaagaagtgattataatggtggaccCTA---------------------TGTGTACTCATGGATATTGACAGCGTACTTTTGAAATTAAGGAGGGTTTTTTTTTTACTGA--TTTTTTCACCATATCTCTATTTATTTGAATTAAACTTTGTA-GTTAAGTATTGTAAATTTTGTTC
s panTro5.chr6             30355336 346 + 175400573 cttacgagagaaactatgtagggttggcagacagtatgtagcaccaatttgaggtctgaaatg------tttaacatgtttcaggaggctgcctaaggacagacagcaaacaagaaggtgatggtacatttta-ccatggataaggagttgtctgaaaaataacacagagagggag-ggtaagggagttgagtatatttctgaagaagtgattataatggtggaccCTA---------------------TGTGTTCTCATGGATATTGACAGCGTACTTTTGAAATTAAGGAGGG-TTTTTTTTTACTGA--TTTTTTCACCATATCTCTATTTATTTGAATTAAACTTTGCAGGTTAAGTATTGTAAATTATGTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30589684 346 + 173848474 cttacgagagaaactatgtagtgttggcagacagtatgtagcaccaatttgaggtctgaaatg------tttaacatgtttcaggaggctgcctaaggacagacagcaaacaagaaggtgatggtacatttta-ccatggataaggagttgtctgaaaaataacacagagagggag-ggtaagggagttgagtatatttctgaagaagtgattataatggtggaccCTA---------------------TGTGTTCTCATGGATATTGACAGCGTACTTTTGAAATTAAGGAGGG-TTTTTTTTTACTGA--TTTTTTCACCATATCTCTATTTATTTGAATTAAACGTTGCAGGTTAAGTATTGTAAATTATGTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     296774 344 +   2037526 cttacaagagaaactatgtagggttggcagacagtatgtagcaccaatttgagttctgaaatg------tttaacatgtttcaggaggctgcctgaggacagacagcaaacaagaaggtgatggtacatttta-ccatggataaggagttgtctgaaaagtaacacagagagggag-ggtaagggagttgagtatatttctgaagaagtgattataatggtggaccCTA---------------------TGTGTACTCATGGATATTGACAGC-TACTTTTGAAATTAAGGAGGG-TTTTTTTTTACTGA--TTTTTTCACCATATCTCTATTTATTTGAATTAAACTTTGTA-GTTAAGTATTGTAAATTATGTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30841729 345 + 172585720 cttacaagagaaactatgtagggttggcagacagtatgtggcaccaatttgaggtctgaaatg------tttaacatgtttcaggaggctgcttgaggacagacagcaaacaagaaggtgagggcacatttta-ccatggataaggagttgtctgaaaagcaatacagagagagag-ggtaagggagttgagtgtatttctgaagaagtgattatgatggtggaccgtA---------------------TGTGTAGTCATTGATATTGATAGCATACTTTTAAAATTAAGGAGGA---TTTTTTTACTGA-TTTTTTTCACCATATCTCTATTTATTTGAATTAAACTTTGTAGATTAAGTACTGTAAATTATGTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30131212 345 - 170955103 cttacaagagaaactatgtagggttggcagacagtatgtggcaccaagttgaggtctgAAATG------TTTAACATGTTTCAGGAGgctgcttgaggacagacagcaaacaagaaggtgagggcacatttta-ccatggataaggagttgtctgaaaagcaatacagagagagag-ggtaagggagttgagtgtatttctgaagaagtgattataatggtggaccgtA---------------------TGTGTACTCATTGATATTGATAGCATACTTTTAAAATTAAGGAGGA---TTTTTTTACTGA-TTTTTTTCACTATATCTCTATTTATTTGAATTAAACTTTGTAGATTAAGTACTGTAAATTATGTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     380443 343 +   1495729 cttacaagagaaactatgtagggttggcagacagtatgtggcaccaagttgaggtctgaaatg------tttaacatgtttcaggaggctgcttgaggacagacagcaaacaagaaggtgagggcacatttta-ccatggataaggagttgtctgaaaagcaatac--agagagag-ggtaagggagttgagtgtatttctgaagaagtgattataatggtggaccgtA---------------------TGTGTACTCATTGATATTGATAGCATACTTTTAAAATTAAGGAGGA---TTTTTTTACTGA-TTTTTTTCACCATATCTCTATTTATTTGAATTAAACTTTGTAGATTAAGTACTGTAAATTATGTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     482160 345 -    863181 cttacaagagaaactatgtagggttggcagacagtatgtagcaccaatttgaggtctgaaatg------tttaacatgtttcaggaggctacttgaggacagacagcaaacaagaaggtgagggcacatttta-ccatggataaggagttgtctgaaaagcaatacagagagagag-ggtaagggagttgagtgtatttctgaagaagtgattataatggtggaccCTA---------------------TGTGTACTCATTGATATTGATAGCATACTTTTAAAATTAAGGAGGA---TTTTTTTACTGA-TTTTTTTCACCATATCTCTATTTATTTGAATTAAACTTTGTAGATTAAGTACTGTAAATTATGTTC
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     350527 344 -    735854 cttacaagagaaactatgtagggttggcagacagtatgtagcaccaatttgaggtctgaaatg------tttaacatgtttcaggaggctacttgaggacagacagcaaacaagaaggtgagggcacatttta-ccatggataaggagttgtctg-aaagcaatacagagagagag-ggtaagggagttgagtgtatttctgaagaagtgattataatggtggaccgtA---------------------TGTGTACTCATTGATATTGATAGCATACTTTTAAAATTAAGGAGGA---TTTTTTTACTGA-TTTTTTTCACCATATCTCTATTTATTTGAATTAAACTTTGTAGATTAAGTACTGTAAATTATGTTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     269107 341 -   1829203 cttacaagagaaactatgtagggttggcagacagtatgtagcaccaatttgaggtctgaaatg------tttaacatgtttcaggaggctgcttgaggacagacagcaaacaagaaggtgagggcacatttta-ccatggataaggagttgtctgaaaagcaatacagagagagag-ggtaagggagttgagtgtatttctgaagaagtgactgttatTCTGAA---GA---------------------AGTGTACTCATTGATATTGATAGCATACTTTTAAAATTAAGGAGGA----TTTTTTACTGA-TTTTTTTTACCATGTCTCTATTTATTTGAATTAAACTTTGTAGATTAAGTATTGTAAATTATGTTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30466724 323 + 171630274 ctcataagagaaactatgcagggttagcagacagtatggagcaccagcttgaggtctgagatG------TTTAACATGTTTCAGGAGGCTGCCTGAGGACAGACAGCCAACAAGAA-GTGATGATACATTTTA-CCAAGAATAAGGAGTTGTCCAAAAAGTAATA--GTG-------------------GAGGGTATTTCTGAAGAAGTGATTGTAATGGTGGACCCTA---------------------TGTATACTCATGGATATTAATAGCATACTTTTGAAATCAAGGAGTT----TTTTTAACTGATTTTTTTTTACCATATCTCTATTTATTT-AAATTAGCTTTGTAGATTAAGTATTATAAATTATGTTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           275396 340 +    515838 ctcacatgagaaactatgtagggttagcagacagtatggagcaccaacttgaggtctgaaatg------tttaacatatttcaggaggctgcctgaggacagacagccaacaagaa-gtgatgatacatttta-ccaaggataaggagttgtccaaaaagtaata--gagagggag-ggttagggagctgagggtatttctgaagaagtgattgtaatggtggaccctg---------------------TGTGTACTCATGGATATTGATAGTATACTTTTGAAATCAAGGAGTT----TTTTTAACTGA--TTTTTTCACCGTATCTCTATTTATTTAAAATAAACTTTGTAGATTAAGTATTACAAATTATGTTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     904349 336 -   1771730 ctcacaagagaaactatgtagggttagcagacagtatggagcaccagcttgaggtctgaaatg------tttaacatgtttcaggaggctacctgaggactgacagccaacaagaa-gtgatgatacatttta-ccaaggataaggagttgtctgaaaagtaata--gag----ag-ggttagggagttgagggtatttctgaagaagtgattgtaatggtggaccCTA---------------------TGTGTACTCATGGATATTGATAGTATACTTTTGAAATCAAGGAGTT----TTTTTAACTGA--TTTTTTCACCGTATCTGTATTTATTTAAATTAAACTTTGTAGATTAAGTATTACAAATTATGTTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      81227 336 -    486031 ctcacaagagaaactatgtagggttaggagacagtatggagcaccaacttgaggtctgaaatg------tttaacatgtttcaggaggctgcctgaggacagacagccaacaagaa-gtgatgatacatttta-ccagggataaggagttgtctgaaaagtaata--gagagagag-ggttaaggagttgagggtatttctgaagaagtgattgtaatggtggaccCTA---------------------TGTGTACTCATGGATATTGAGAGTATACTTTTGAAATCAAGGAGTT----TTTTTAACTGA--TTTTTTCACTGTATCTGTATTTATTTAAATTAAACTTTGTAGAT----TATTACAAATTATGTTA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           313919 342 +  18854210 CCTTTGAGAGACACTGGCTAGTATTGGCAAGCAGTTTGGAGCACCAGTTTGAAGCTTGAAACTGAGGGCTTTAACATGTTCCA--AGGATACTTGAGGACAGTCAACCAA----AAGGTAATGGCACATTTTACCCAAAGATAGGGAATTGTGTGAAAAATAATACagagagggagaagcaagagagttgagggtgtttctgaagaagcgatcataatgGGGGCTCCAG---------------------GGTGTGTTTGCAGATGTTGATAGCACAATCTTGCAATTAAGGGGTT--------TTAAAAT-TTTTTTTAACTATGTGTTTATTTCTCTGATGtaaaatttgtaaattaaatattataaattatattc
i otoGar3.GL873550         C 0 I 1
s dasNov3.JH567297            27386 313 +     53444 CCTGAGAGACAAGCTG-ATAGGATTGGCAGGCAGCAGG----AGCAATCTGAGGGGGAAACCA--GGGATCTGCCATGTTTCCAGAGG---------------------ACAAGATGGTGGAGG-----TTAT-CTGGGAACAATGAGTCA-CTGAGGAGCTGTA---GGGGTGAC-GACCAGGGAGGTTGG-GTGTTTTTAAAGAA---ATTATCACGGTGGACCTGAAACAGCCTCAACCAGGGGAAGTGTGCACTTGTGGCTCTTGACAGCGCAATTTTGAAACCG-----------TTTTCTTGTGG----TTTTCCCCATTTCTGTATTTCGTTGGATCAGATTCCCTC-------CATGGTAGCTTGTGTCC
i dasNov3.JH567297         I 22 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     161702 1213 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e chlSab2.chr17            29630691 601 -  71996105 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=447412.000000
s hg38.chr6_GL000254v2_alt  1486261 54 +   4827813 TTTTAAAAGAATCATATAATCCCTGACTGTACTCTAAAAAGACCGAAAAATTTA
s panTro5.chr6             30355682 54 + 175400573 TTTTAAAAGAATCATATAATCCCTGACTGTACTCTAAAAAGACCGAAAAATTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590030 54 + 173848474 TTTTAAAAGAATCATATAATCCCTGACTGTACTCTAAAAAGACCGAAAAATTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297118 54 +   2037526 TTTTAAAAGAATCATATAATCCCTGACTGTACTCTAAAAAGACCGAAAAATTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842074 53 + 172585720 TTTTAAAAGAATCATATAATCCCTGACTGT-CTCTAAAAAGACTGAAACATTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30131557 53 - 170955103 TTTTAAAAGAATCATATAATCCCTGACTGT-CTCTAAAAAGACTGAAACATTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     380786 53 +   1495729 TTTTAAAAGAATCATATAATCCCTGACTGT-CTCTAAAAAGACTGAAACATTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     482505 53 -    863181 TTTTAAAAGAATCATATAATCCCTGACTGT-CTCTAAAAAGACTGAAACATTTA
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     350871 53 -    735854 TTTTAAAAGAATCATATAATCCCTGACTGT-CTCTAAAAAGACTGAAACATTTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     269448 53 -   1829203 TTTTAAAAGAATCGTATAATCCCTGACTGT-CTCTAAAAAGACTGAAACATTTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30467047 52 + 171630274 TTT--AAAGAATCATATAATCCCTGACTATACTCTAAAAAGACTGAAAAATTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           275736 39 +    515838 TTT--AAAAAATCA-------------TATACTCTAAAAAGATTGAAAAATTTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     904685 52 -   1771730 TTT--AAAGAATCATATAATCCCTGACTGTACTGTAAAAAGATTGAAAAATTTA
i cebCap1.NW_016107755v1   C 0 I 285
s aotNan1.NW_018496901v1      81563 52 -    486031 TTT--AAAGAATCACATAATCCCTGACTATACTCTAAAAAGATTGAAAAATTTA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     162915 54 -   1411461 TTTTAAAGGAATTCTGTAATCCCTGACTGTACTCTAGGAAGACTGAAAAATGTG
i proCoq1.NW_012149775v1   I 1213 C 0
s otoGar3.GL873550           314262 54 +  18854210 ttttaaaGGAATTATGTAATCCCTGACTGTATTCTAGAAAGACAGAAAAATTTA
i otoGar3.GL873550         I 1 C 0
s dasNov3.JH567297            27699 39 +     53444 TCTTCACAG---------------GACTGCTCTCCAGAAGGACTGAGCAAATTC
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e canFam3.chr35            26333970 2948 +  26524999 I
e chlSab2.chr17            29630691 601 -  71996105 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=944149.000000
s hg38.chr6_GL000254v2_alt  1486315 104 +   4827813 TAAAATCTACAAATTCTTATTTGTATACCTGTTTCCTCACTGACCAATCAATGTCAGTGTCAATCACTTTAATGTATTTTGCTGGTTTAG-TAAGTGTGTGACAG
s panTro5.chr6             30355736 104 + 175400573 TAAAATCTACAAATTCTTATTTGTATACCTGTTTCCTCACTGACCAATCAATGTCAGTGTCAATCACTTTAATGTATTTTGCTGGTTTAG-TAAGTGTGTGACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590084 104 + 173848474 TAAAATCTACAAATTCTTATTTGTATACCTGTTTCCTCACTGACCAATCAATGTCAGTGTCAATCACTTTAATGTATTTTGCTGGTTTAG-TAAGTGTGTGACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297172 104 +   2037526 TAAAATCTACAAATTCTTATTTGTATACCTGTTTCCTCACTGACCAATCAATGTCAGTGTCAATCACTTTAATGTATTTTGCTGGTTTAG-TAAGTGTGTGACAG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842127 104 + 172585720 TGAAATCTACAAATTCTTATTTGTGTACCTATTTCCTCACTGACCAACCAATGCCAGTGTCAATCACTTTAATGTATTTTGCTGGTTTAG-TAAGTGTGTGGCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30131610 104 - 170955103 TGAAATCTACAAATTCTTATTTGTGTACCTATTTCCTCACTGACCAACCAATGCCAGTGTCAATCACTTTAATGTATTTTGCTGGTTTAG-TAAGTGTGTGACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     380839 104 +   1495729 TGAAATCTACAAATTCTTATTTGTGTACCTATTTCCTCACTGACCAACCAATGCCAGTGTCAATCACTTTAATGTATTTTGCTGGTTTAG-TAAGTGTGTGACAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     482558 104 -    863181 TGAAATCTACAAATTCTTATTTGTGTACCTATTTCCTCACTGACCAATCAATGCCAGTGTCAATCACTTTCATCTATTTTGCTGGTTTAG-TAAGTGTGTGACAG
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     350924 104 -    735854 TGAAATCTACAAATTCTTATTTGTGTACCTGTTTCCTCACTGACCAATCAATGCCAGTGTCAATCACTTTCATGTATTTTGCTGGTTTAG-TAAGTGTGTGACAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     269501 104 -   1829203 TAAAATCCACAAATTCTTATCTGTATACCTGTTTCCTCACTGACCAACCAATGCCAGTGTCAATCACTTTAATGTATTTTGCTGGTTTAG-TAAGTGTGTGACAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30467099 100 + 171630274 TAAAATCTACAAATTCTTATTTGTATACCTGTTTCCTCACTGACCAACCAATGCCAGTGTCG----CTTTAATGTATTTTGCTGGTTTGG-TAAGTGAGTGATGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           275775  98 +    515838 TAAAACCTACAAATTCTTATTTGCATACCTGTTTCCTCACTGCCCAACCAATGCCAGTGTCAAT--CACTTATGTATTTTGCTGATTT-----AGTGAGTGATGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     905022 104 -   1771730 TAAAATCTACAAATTCTTATTTGTATACCTGTTTCATCACTGACCAACCAATGCCAGTGTCAATCACTTCAATGTATTTTGCTGGTTTAG-TAAGTGAGTGATGG
i cebCap1.NW_016107755v1   I 285 C 0
s aotNan1.NW_018496901v1      81615 104 -    486031 TAAAATCTACAAATTCTTATTTGTATACCTGTTTCCTCACTGACCAACCAATGCCAGTGTCAATCACGTCAATGTATTTTGCTGGTTTAG-TGAGTGAGTGACGA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     162969 103 -   1411461 -TAAATCTGCAAAGTCTGATTTGTATACCTGTTTCCTCCCTGACGGACCAGTGTTGGTGTCGATCGCTGTAACATGTCTGGCTGGTTTAA-TGAGTGTGTGACAG
i proCoq1.NW_012149775v1   C 0 I 210
s otoGar3.GL873550           314316 100 +  18854210 -TAAATCTAGAAAGTCATATTTGTGTATCTGTTTCCTC----ACTGACCAATGTTGACATCAATCATTTTAATGTGTTTTGCGGGTTTAATTAAGTGTGTAACAG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            27738  94 +     53444 ACAATGCTCCAAAGAAGGATTTGGAAGCCTG-TTCCCCACTGCCGGATAAACGTGGGGCTCGATCACCTTAAT-------GCTCATTTAA-T-AGTGTGTG-CAG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e canFam3.chr35            26333970 2948 +  26524999 I
e chlSab2.chr17            29630691 601 -  71996105 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=345545.000000
s hg38.chr6_GL000254v2_alt  1486419 44 +   4827813 TGATGTACGTTGTTTTACTTTGCTTGATTATGAATGCTAGTAGT--
s panTro5.chr6             30355840 44 + 175400573 TGATGTACATTGTTTTACTTTGCTTGATTATGAATGCTAGTAGT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590188 44 + 173848474 TGATGTACATTGTTTTACTTTGCTTGATTATGAATGCTAGTAGT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297276 44 +   2037526 TGATGTACGTTGTTTTACTTTGCTTGATTATGAATGCTAGTAGT--
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842231 44 + 172585720 TGATGTACGTTGTTTGACTTTGCTTGATTATGACTGCTAGTAGT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30131714 44 - 170955103 TGATGTACGTTGTTTGACTTTGCTTGATTATGACTGCTAGTAGT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     380943 44 +   1495729 TGATGTACGTTGTTTGACTTTGCTTGATTATGACTGCTAGTAGT--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     482662 44 -    863181 TGATGTACGTTGTTTGACTTTGCTTAATTATGAATGCTAGTAGT--
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     351028 44 -    735854 TGATGTACGTTGTTTGACTTTGCTTGATTATGACTGCTAGTAGT--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     269605 44 -   1829203 TGATGTACGTTGTTTGACTTTGCTTGATTATGAATGCTAGCAGT--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30467199 41 + 171630274 TGATGTACATTGTTTTACTTTGCTTGATTATGAATGCT---AGT--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           275873 41 +    515838 TGATGTACATTGTTTTACTTTGCTTGATTATGAATGCT---ACT--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     905126 41 -   1771730 TGATGTACATTGTTTTATTTTGCTTGATTATGAATGCT---AGT--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      81719 41 -    486031 TGATGTACATTGTTTTACTTTGCTTGATTATGAATGCT---AGT--
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           314416 37 +  18854210 TGACTTACATTGTTTGACTTTGCTTGATTA-AAATGCT--------
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            27832 43 +     53444 TGACTTACGTGGCTTTACTTCATGTGAGGATAAACACT---GGTCT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     163072 210 -   1411461 I
e canFam3.chr35            26333970 2948 +  26524999 I
e chlSab2.chr17            29630691 601 -  71996105 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=574299.000000
s hg38.chr6_GL000254v2_alt  1486463 65 +   4827813 GGTGAGGCTTTTATCC--ATGAAGACTCGCTGTCTGCATTTTCCCCTAGAATCAGGGCATAAATTCT
s panTro5.chr6             30355884 65 + 175400573 GGTGAGGCTTTTATCC--ATGAAGACTCGCTGTCTGCATTTTCCCCTAGAATCAGGGCATAAATTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590232 65 + 173848474 GGTGAGGCTTTTATCC--ATGAAGACTCGCTGTCTGCATTTTCCCCTAGAATCAGGGCATAAATTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297320 65 +   2037526 GGTGAGGCTTTTATCC--ATGAAGACTCGCTGTCTGCATTTTCCCCTAGAATCAGGGCATAAATTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842275 65 + 172585720 GGTGAGGCTTTTATCC--ATGAAGACTTGCAGTCTGCATTTTCCCCTAGAATCAGGGCATACATTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30131758 65 - 170955103 GGTGAGGCTTTTACCC--ATGAAGACTCGCAGTCTGCGTTTTCCCCTAGAATCAGGGCATACATTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     380987 65 +   1495729 GGTGAGGCTTTTACCC--ATGAAGACTCGCAGTCTGCGTTTTCCCCTAGAATCAGGGCATACATTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     482706 65 -    863181 GGTGGGGCTTTTATCC--ATGAAGACTCGCAGTCTGCATTTTCCCCTAGAATCAGGACATACATTCC
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     351072 65 -    735854 GGTGGGGCTTTTATCC--ATGAAGACTCGCAGTCTGCATTTTCCCCTAGAATCAGGACATACATTCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     269649 65 -   1829203 GGTGAGGCTTTTATCC--ATGAATACTCGCAGTCTGCATTTTCCCCTAGAATCAGGGCATACATTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30467240 65 + 171630274 GGTGAGGCTTTTATCC--CTGAAGACTCGATATCTGCATTTTCCCCTAGAATCAGGGCATAAATTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           275914 65 +    515838 GGTGAGGCTTTTATCC--CTGAAGACTCGATGTCTGCATTTTCCCTTAGAATCAGGGCATAAATTCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     905167 65 -   1771730 GGTGAGGCTTTTATCC--CTGAAGACTCGAAGTCTGCATTTTCCCCTAGAATCAGGGCATAAATTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      81760 65 -    486031 GGTGAGGTTTTTATCC--CTGAAGACTCGATGTCTGCATTTTCCCCTAGAATCAGGGCATGAATTCT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           314453 55 +  18854210 ----------TCATTT--GTGAAGACTCACTGGCTACATTTTCCCTTAGCATCAGGGAATAAATTCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26336918 65 +  26524999 GGAGACACTTGCACCC--CCAGATCCACTCAGCCTGCACAGCTCCCCTCACACCGGGCGTAAATGAA
i canFam3.chr35            I 2948 C 0
s dasNov3.JH567297            27875 63 +     53444 --GGAGGCTTTTATCCATATGAAGAGTCCCTGTCTG--TTTCCAACTAGAaaggggtcttaacctct
i dasNov3.JH567297         C 0 I 523
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     163072 210 -   1411461 I
e chlSab2.chr17            29630691 601 -  71996105 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=448597.000000
s hg38.chr6_GL000254v2_alt  1486528 57 +   4827813 ACATGATTGCATCAAAATAGTTTATCTTTTGGATAATGAGCTCCATTAGTTGTGTTT----
s panTro5.chr6             30355949 53 + 175400573 ACATGATTGCATCAAAGTAGTTTATCTTTTGGATAATGAGCTCCATTAGTTG----T----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590297 53 + 173848474 ACATGATTGCATCAAAGTAGTTTATCTTTTGGATAATGAGCTCCATTAGTTG----T----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297385 53 +   2037526 ACATGATTGCATCAAAGCAGTTTATCTTTTGGATAATGAGCTCCATTAGTTG----T----
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842340 53 + 172585720 ACATGACTGCATCAAAGTAGTTTATCTTTTGGATCATGAGCTCCATTAATTA----T----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30131823 53 - 170955103 ACGTGACTGCATCAAAGTAGTTTATCTTTTGGATCATGAGCTCCATTAATTG----T----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     381052 53 +   1495729 ACGTGACTGCATCAAAGTAGTTTATCTTTTGGATCATGAGCTCCATTAATTG----T----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     482771 53 -    863181 ACATGACTGCATCAAAGTAGTTTATCTTTTGGATCATGAGCTCCATTAATTG----T----
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     351137 53 -    735854 ACATGACTGCATCAAAGTAGTTTATCTTTTGGATCATGAGCTCCATTAATTG----T----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     269714 53 -   1829203 ACATGACTGCATCGAAGTAGTTTATCTTTTGGATCATGAGCTCCATTAATTG----T----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30467305 53 + 171630274 ACATGATTGCATCAAAGTAGTTTATCTTTTGGTTAATGGGCTACATTAGTTG----T----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           275979 53 +    515838 ACATGACTGCATCAAAGTCGTTTATCTTTTGGTTAATGGACTACATTCGTTG----T----
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     905232 52 -   1771730 ACATGATTGCATCAAAGTAGTTTATCTTTT-GTTAATGGGCTACATTAGCTG----T----
i cebCap1.NW_016107755v1   C 0 I 331
s aotNan1.NW_018496901v1      81825 53 -    486031 ACATGATTGCATCAAAGTAGTTTATCTTTTGGTTAATGGGCTACATTAGTTG----T----
i aotNan1.NW_018496901v1   C 0 I 313
s otoGar3.GL873550           314508 53 +  18854210 ACATGATTGCATCAAAGTACTTTATCTTTTGCATAATAAGCCACATTAGTTA----T----
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26336983 57 +  26524999 GTGTGATGGCACCAAAGTTCTTTCTCTGTTAGATGATAAACTATTTTAGTTA----TGGTT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     163072 210 -   1411461 I
e chlSab2.chr17            29630691 601 -  71996105 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=71825.000000
s hg38.chr6_GL000254v2_alt  1486585 10 +   4827813 GTTTAACCTA
s panTro5.chr6             30356002 10 + 175400573 GTTTAACCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590350 10 + 173848474 GTTTAACCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297438 10 +   2037526 GTTTAACCTA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842393 10 + 172585720 GTTTAACCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30131876 10 - 170955103 GTTTAACCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     381105 10 +   1495729 GTTTAACCTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     482824 10 -    863181 GTTTAACTTA
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     351190 10 -    735854 GTTTAACCTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     269767 10 -   1829203 GTTTAACCTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30467358 10 + 171630274 GTTTAACCTA
i calJac3.chr4             C 0 I 271
s saiBol1.JH378341           276032 10 +    515838 GTTTAACCTA
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           314561 10 +  18854210 GTTTCACCTA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26337040  6 +  26524999 ----AACCTC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     163072 210 -   1411461 I
e aotNan1.NW_018496901v1      81878 313 -    486031 I
e cebCap1.NW_016107755v1     905284 331 -   1771730 I
e chlSab2.chr17            29630691 601 -  71996105 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=10229.000000
s hg38.chr6_GL000254v2_alt  1486595 2 +   4827813 CA
s panTro5.chr6             30356012 2 + 175400573 TG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590360 2 + 173848474 CG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297448 2 +   2037526 CA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842403 2 + 172585720 CA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30131886 2 - 170955103 CA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     381115 2 +   1495729 CA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     482834 2 -    863181 CA
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     351200 2 -    735854 CA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     269777 2 -   1829203 CA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30467639 2 + 171630274 CA
i calJac3.chr4             I 271 I 1
s saiBol1.JH378341           276042 2 +    515838 CA
i saiBol1.JH378341         C 0 I 1
s otoGar3.GL873550           314571 2 +  18854210 TG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26337046 2 +  26524999 CA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     163072 210 -   1411461 I
e aotNan1.NW_018496901v1      81878 313 -    486031 I
e cebCap1.NW_016107755v1     905284 331 -   1771730 I
e chlSab2.chr17            29630691 601 -  71996105 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=52989.000000
s hg38.chr6_GL000254v2_alt  1486597 8 +   4827813 TTTTTTTA
s panTro5.chr6             30356014 8 + 175400573 TTTTTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590362 8 + 173848474 TTTTTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297450 8 +   2037526 TTTTTTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842405 7 + 172585720 -TTTTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30131888 7 - 170955103 -TTTTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     381117 7 +   1495729 -TTTTTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     482836 7 -    863181 -TTTTTTA
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     351202 7 -    735854 -TTTTTTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     269779 7 -   1829203 -TTTTTTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30467642 7 + 171630274 -TTTCTTT
i calJac3.chr4             I 1 I 2
s saiBol1.JH378341           276045 7 +    515838 -tttgttt
i saiBol1.JH378341         I 1 I 307
s cebCap1.NW_016107755v1     905615 7 -   1771730 -TTTTTTT
i cebCap1.NW_016107755v1   I 331 I 1
s aotNan1.NW_018496901v1      82191 6 -    486031 --TTTTTT
i aotNan1.NW_018496901v1   I 313 I 2
s otoGar3.GL873550           314573 7 +  18854210 -TTTTTCA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26337048 8 +  26524999 TTTTTTTA
i canFam3.chr35            C 0 I 3
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     163072 210 -   1411461 I
e chlSab2.chr17            29630691 601 -  71996105 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=188243.000000
s hg38.chr6_GL000254v2_alt  1486605 19 +   4827813 TTCTGTTATT--TCTTCTTAA
s panTro5.chr6             30356022 19 + 175400573 TTCTGTTATT--TCTTCTTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590370 19 + 173848474 TTCTGTTATT--TCTTCTTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297458 19 +   2037526 TTCTGTTATT--TCTTCTTAA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842412 19 + 172585720 TTCTGTTATT--TCTTCTTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30131895 19 - 170955103 TTCTGTTATT--TCTTCTTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     381124 19 +   1495729 TTCTGTTATT--TCTTCTTAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     482843 19 -    863181 TTCTGTTATT--TCTTCTTAA
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     351209 19 -    735854 TTCTGTTATT--TCTTCTTAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     269786 19 -   1829203 TTCTGTTATT--TCTTCTTAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30467651 19 + 171630274 TTCTGTTATT--TCTTCTTAA
i calJac3.chr4             I 2 C 0
s saiBol1.JH378341           276359 19 +    515838 TTCTGTTATT--TCTTCTTAA
i saiBol1.JH378341         I 307 C 0
s cebCap1.NW_016107755v1     905623 19 -   1771730 TTCTGTAATT--TCTTCTTAA
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496901v1      82199 19 -    486031 TTCTGTTATT--TCTTCTTAA
i aotNan1.NW_018496901v1   I 2 C 0
s otoGar3.GL873550           314580 21 +  18854210 TTCTGTTATTTCTCTTCTTTA
i otoGar3.GL873550         C 0 I 3
s canFam3.chr35            26337059 19 +  26524999 CTCTGTTATT--TCTTTTCTG
i canFam3.chr35            I 3 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     163072 210 -   1411461 I
e chlSab2.chr17            29630691 601 -  71996105 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=151022.000000
s hg38.chr6_GL000254v2_alt  1486624 18 +   4827813 --TTA---T-ATTTTTGGGCAAAT--
s panTro5.chr6             30356041 18 + 175400573 --TTA---T-ATTTTTGGGCAACT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590389 18 + 173848474 --TTA---T-ATTTTTGGGCAACT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297477 18 +   2037526 --TTA---T-ATTTTTGGGCAAAT--
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842431 18 + 172585720 --TTA---T-ATTTTTGGGCAAAA--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30131914 18 - 170955103 --TTA---T-ATTTTTGGGCAAAA--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     381143 18 +   1495729 --TGA---T-ATTTTTGGGCAAAA--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     482862 18 -    863181 --TTA---T-ATTTTTGGGCAAAA--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29631292 18 -  71996105 --ttA---T-ATTTTTGGGCAAAA--
i chlSab2.chr17            I 601 C 0
s manLeu1.NW_012107142v1     351228 18 -    735854 --TTA---T-ATTTTTGGGCAAAA--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     269805 18 -   1829203 --TTA---T-ATTTTTGGGCAAAA--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30467670 18 + 171630274 --TTA---C-ATTTTTGGGCAACA--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           276378 18 +    515838 --TTA---C-ATTTTTGGGCAAAA--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     905642 18 -   1771730 --TTA---C-ATTTTTGGGCAAAA--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      82218 18 -    486031 --TTA---C-ATTTTTGAGCAAAA--
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           314604 19 +  18854210 --TTG---TAATTTGGGGGCAAAA--
i otoGar3.GL873550         I 3 I 1
s canFam3.chr35            26337078 25 +  26524999 TTTTAGAGT-ATTTGTGGATCGAGAC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     163072 210 -   1411461 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=1415190.000000
s hg38.chr6_GL000254v2_alt  1486642 147 +   4827813 TTTTAGAAATTTGCATTTAAATTGGCTCTATTCTTTTTTATAATATAATCTCCATGTCTTAAATACACAGAAATT---TGTTTAATATGAGTGTGC-TGCTCTGTTT-TATTTT-TAAAGGTTTATT-AATTCCT-GGCTTACTTGG---------------------------AATT---------TCAT
s panTro5.chr6             30356059 147 + 175400573 TTTTAGAAATTTGTATTTAAATTGGCTCTATTCTTTTTTATAATATAATCTCCATGTCTTAAATACACAGAAATT---TGTTTAATATGAGTGTGC-TGCTCTGTTT-TATTTT-TAAAGGTTTATT-TATTCCT-GGCTTACTTGG---------------------------AATT---------TCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590407 147 + 173848474 TTTTAGAAATTTGTATTTAAATTGGCTCTATTCTTTTTTATAATATAATCTCCATGTCTTAAATACACAGAAATT---TGTTTAATATGAGTGTGC-TGCTCTGTTT-TATTTT-TAAAGGTTTATT-TATTCCT-GGCTTACTTGG---------------------------AATT---------TCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297495 147 +   2037526 TTTTAGAAATTTGTATTTAAATTAGCTCTATTCTTTTTTATAATATAATCTCCACGTCTTAAATACACAGAAATT---TGTTTAATATGAGTGTGC-TGCTCTGTTT-TATTTT-TAAAGGTTTATT-AATTCCT-GGCTTACTTGG---------------------------AATT---------TCAT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842449 147 + 172585720 TTTTAGAAATTTGTATTTAAATTGGCTCTATTCTTTTTCATAATATAATCTCCATGTCTTAAATACACAGAAATT---TGTTTGATAAGAGTGTGC-TGCTCTGTTT-TATTTT-TAAAGATTTATT-AATTCCT-GGCTTACTTGG---------------------------AATT---------TCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30131932 147 - 170955103 TTTTAGAAATTTGTATTCAAATTGGTTCTATTCTTTTTCATAATATAATCTCCATGTCTTAAATACACAGAAATT---TGTTTGATAAGAGTGTGC-TGCTCTGTTT-TATTTT-TAAAGATTTATT-AATTCCT-GGCTTACTTGG---------------------------AATT---------TCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     381161 142 +   1495729 TTTTAGAAATTTGTATTCAAATTGG-----TTCTTTTTCATAATATAATCTCCATGTCTTAAATACACAGAAATT---TGTTTGATAAGAGTGTGC-TGCTCTGTTT-TATTTT-TAAAGATTTATT-AATTCCT-GGCTTACTTGG---------------------------AATT---------TCAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     482880 148 -    863181 TTTTAGAAATTTGTATTTAAATTGGCTCTATTCTTTTTCGAAATATAATCTCCATGTCTTAAATACACAGAAATT---TGTTTGATAAGAGTGTGC-TGCTCTGTTT-TATTTT-TAAAGATTTATT-AATTCCTGGGCTTACTTGG---------------------------AATT---------TCAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29631310 147 -  71996105 TTTTAGAAATTTGTATTTAAATTGGCTCTATTCTTTTTCATAATATAATCTCCATGTCTTAAATACACAGAAATT---TGTTTGATAAGAGTGTGC-TGCTCTGTTT-TATTTT-TAAAGATTTATT-AATTCCT-GGCTTACTTGG---------------------------AATT---------TCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     351246 147 -    735854 TTTTAGAAATTTGTATTTAAATTGGCTCTATTCTTTTTCATAATATAATCTCCATGTCTTAAATACACAGAAATT---TGTTTGATAAGAGTGTGC-TGCTCTGTTT-TATTTT-TAAAGATTTATT-AATTCCT-GGCTTACTTGG---------------------------AATT---------TCAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     269823 147 -   1829203 TTTTAGAAATTTGTATTTAAATTGGCTCTATTCGTCTTCATAATATAATCTCCATGTCTTAAATACACAGAAATT---TGTTTGATAAGAGTGTGC-TGCTCTGTTT-TATTTT-TAAAGATTTATT-AATTCCT-GGCTTACTTGG---------------------------AATT---------TCAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30467688 152 + 171630274 GTTTATAAAATCGTATTTAAATTGGATGTATTCTTTTTTACAATATAATCTTCATGTACTAAATACACATAACTC--ATGTCAATATTGAATGTGCTTGCTCTGTTTCTATTTTATAAAGGTTAATTACATTCCC-TGACTACCTTG---------------------------GATT---------TTAT
i calJac3.chr4             C 0 M 979
s saiBol1.JH378341           276396 150 +    515838 CTTTAGAAAATTGTATTTAAATTGTTTGTATTCTTTTTTACAATATAATCTTCATGTTCTAACTACACAGAAATTTGTTGTCTAATATGAGTGTGC-TGCTCTgttt-tatttt-taaaggtttatt-cattcct-agcttacttgg---------------------------aatt---------ttat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     905660 147 -   1771730 TTTTAGAAAATTGTATTTAAATTGGTTGTATTCTTTTTCACAATATAATCTTCATGTTCTAAATACACAGAAATT---TGTCTAATATGAGTGTGC-TGCTCTGTTT-TATTTC-TAAAGGTTTATT-CATTCCT-GGCTTACTTGG---------------------------AATT---------TTAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      82236 147 -    486031 TTTTAGAAAATTGTATTTAAATTGGTTTTATTCTTTTTTACAATATAATCTTCATGTTCTAAATACACAGAAATT---TGTCTAATATGAGTGTGC-TGCTCTGTTT-TATTTT-TAAAGGTTTATT-CATTCCT-GGCTTACTTGG---------------------------AATT---------TTAT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     163282 142 -   1411461 TTTTAGAAATTTGTATTTAACTGAGTTCTATTCATTTTAACAACTCAATCTCCATGTCTTGAAT-CACAGAAATT---TGCCTAATACGATTATAC-TGTTCTGTGT-TATTTT-TAAAG----ATT-AATTCCT-GGTTTCTTTGT---------------------------AATT---------TAAT
i proCoq1.NW_012149775v1   I 210 C 0
s otoGar3.GL873550           314624 154 +  18854210 TTTTAGAAATTTGCATTTATGTGAGTTCCATTCATTTTAACAACATAAGCTCCATGTCtc-------------tt---tttct-------ttttct-ttttcttttt-tttttt-t---------tt-gagacag-agtttcactatgtcaccctcagtagagtgcTTGACATAAATTAAGTTCTTATAAT
i otoGar3.GL873550         I 1 C 0
s canFam3.chr35            26337103 142 +  26524999 ATTTAGAAATTTGCACTTAAATCAGTTTTATTCTTTCAAAAAATAGAATCACCGTGTCCTA----CTCAGTAATC---CATCTAA-ATGATTATAC-TGTTCTGTTT-Catttt-taaatattaatt-aattCCT-GGCTTCTCTGG---------------------------AATC---------TACT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=562597.000000
s hg38.chr6_GL000254v2_alt  1486789 62 +   4827813 ATAGTATGTTGTGTGAAGGATGACTCCACGTTAATT-TTTCTTTATTCTGGTATCCAGTTGTT
s panTro5.chr6             30356206 62 + 175400573 ATAGTATGTTGTGTGAAGGATGACTCCACGTTAATT-TTTCTTTATTCTGGTATCCAGTTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590554 62 + 173848474 ATAGTATGTTGTGTGAAGGATGACTCCACGTTAATT-TTTCTTTATTCTGGTATCCAGTTGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297642 62 +   2037526 ATAGTATGTTGTGTGAAGGATGACTCCACGTTAATT-TTTCTTTATTCTGGTATCCAGTTGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842596 62 + 172585720 GTAGTATGTTGTATGAAGAATGACTTCAGGTTAATT-TTTCTTTATTCTGGTATCCAGTCGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30132079 62 - 170955103 GTAGTATGTTGTGTGAAGGATGACTCCAGGTTAATT-TTTCTTTATTCTGGTATCCAGTCGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     381303 62 +   1495729 GTAGTATGTTGTGTGAAGGATGACTCCAGGTTAATT-TTTCTTTATTCTGGTATCCAGTCGTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     483028 61 -    863181 GTAGTATGTTGTATGAAGGATGACTCCAGGTT-ATT-TTTCTTTATTCTGGTATCCAGTCGTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29631457 62 -  71996105 GTAGTATGTTGTATGAAGGATGACTCTAGGTTAATT-TTTCTTTATTCTGGTATCTAGTCGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     351393 61 -    735854 GTAGTATGTTGTATGAAGGATGACTCCAGGTT-ATT-TTTCTTTATTCTGGTATCCAGTCATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     269970 62 -   1829203 GTAGTATGTTGTGTGAAGGATGACTCCAGGTTAATT-TTTCTTTATTCTGGTATCCAGTCGTT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           276546 62 +    515838 atagtatgttgtgtgaaggatgactccatgttaatt-tttcttcattctggtatccagttgtc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     905807 62 -   1771730 AGAGCAGGTTGTGTGAAGAATGACTCCATGTTAATT-TTTCTTCATTCTGGTGTCCAGTTGTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      82383 62 -    486031 ATAGTATGTTGTATGAAGGATGACTCCATGTTAATT-TTTCTTCATTCTGGTATCCGGTTGTC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     163424 62 -   1411461 ATAGCGTGTTGTGTGAAGAGTGACTCCATGTTAATG-TTTCTTTATTCTGGTATCCAGTTGTC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           314778 57 +  18854210 AAACTATTTTATTT------TTACTCCAGTTCGTTGACTTTTTTTTTCTGTTTTAAGGTTATT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26337245 57 +  26524999 GTGCTGGGTTGTATGAGGGATGATTTCATGTTAATT----CTTTTTTCTGG--TTCAGTTGTC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e calJac3.chr4             30467840 979 + 171630274 M
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=93343.000000
s hg38.chr6_GL000254v2_alt  1486851 9 +   4827813 CCCAAAATA
s panTro5.chr6             30356268 9 + 175400573 CCCAAAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590616 9 + 173848474 CCCAAAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297704 9 +   2037526 CCCAAAATA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842658 9 + 172585720 CCCAAAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30132141 9 - 170955103 CCCAAAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     381365 9 +   1495729 CCCAAAATA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     483089 9 -    863181 CCCAAAATA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29631519 9 -  71996105 CCCAAAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     351454 9 -    735854 CCCAAAATA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     270032 9 -   1829203 CCCAAAAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30468820 9 + 171630274 CCCAAAGCA
i calJac3.chr4             M 979 C 0
s saiBol1.JH378341           276608 9 +    515838 cccaaagca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     905869 9 -   1771730 CCCAAAGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      82445 9 -    486031 CCCAAAGCA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     163486 9 -   1411461 CCCAAAACG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           314835 9 +  18854210 ATTAATGTA
i otoGar3.GL873550         C 0 I 190
s canFam3.chr35            26337302 9 +  26524999 CCCAAATCA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=847429.000000
s hg38.chr6_GL000254v2_alt  1486860 95 +   4827813 TTTATATAACAGTGAGTCCTTTCCACATTTAC---GTGTTGTTTCTCGCTTGACATCAATTAAGTTCTCATGATGGGCTG--TTTTTTTTTT---ACTCTAGT
s panTro5.chr6             30356277 95 + 175400573 TTTATATAACAGTGAGTCCTTTCCACATTTAT---GTGTTGTTTCTCGCTTGACATCAATTAAGTTCTCATGATGGGCTG--TTTTTTTTTT---ACTCTAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590625 94 + 173848474 TTTATATAACAGTGAGTCCTTTCCACATTTAT---GTGTTGTTTCTCGCTTGACATCAATTAAGTTCGCATGATGGGCTG---TTTTTTTTT---ACTCTAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297713 94 +   2037526 TTTATATAACAGTGAGTCCTTTCCACATTTAC---GTGTTGTTTCTCGCTTGACATCAATTAAGTTCTCATGATGGGCTG---TTTTTTTTT---ACTCTAGT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842667 93 + 172585720 TTTATATGATAGTGAATCTTTTCCACATTTAT---GTGTTGTTTCTCACTTGACATCAATTATGTTCTTCTGATGGGCTG----CTTTTTTT---ACTCTAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30132150 93 - 170955103 TTTATATGATAGTGAATCTTTTCCACATTTAT---GTGTTGTTTCTCACTTGACATCAGTTATGTTCTTCTGATGGGCTG----CTTTTTTT---ACTCTAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     381374 93 +   1495729 TTTATATGATAGTGAATCTTTTCCACATTTAT---GTGTTGTTTCTCACTTGACATCAGTTATGTTCTTCTGATGGGCTG----CTTTTTTT---ACTCTAGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     483098 93 -    863181 TTTATATGATAGTGAATCTTTTCCACATTTAT---GTGTTGTTTCTCGCTTGACATCAATTGTGTTCTTCTGATAGGCTG----CTTTTTTT---ACTCTAGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29631528 93 -  71996105 TTTATATGATAGTGAATCTTTTCCACATTTAT---GTGTTGTTTCTCACTTGACATCAATTGTGTTCTTCTGATGGGCTG----CTTTTTTT---ACTCTAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     351463 93 -    735854 TTTATATGATAGTGAATCTTTTCCACATTTAT---GTGTTGTTTCTCGCTTGACATCAATTGTGTTCTTCTGATGGGCTG----CTTTTTTT---ACTCTAGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     270041 93 -   1829203 TTTATATGATAGTGAATCTTTTCCACATTTAT---GTGTTGTTTCTCGCTTGACATCAATTATGTTCTTCTGATGGGCTG----CTTTTTTT---ACTCTAGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30468829 88 + 171630274 TTACTATAATAGTGAGTTCTTTCCACATTTAT---GTATTGTTTCTCGCTTGGCATAAATTA-----Ttatgatgggttt----tttttttt---actctagt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           276617 95 +    515838 tttctataaaagtgagttctttccacatttac---gtattgtttctcgcttggcataaattaagttcttatgatgggctt----ttttttttt-aactctagt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     905878 94 -   1771730 TTTCTATAATAGTGAGTTCTTTCCACATTTAC---GTGTTGTTTCTCGTTTGGCATAAATTAAGTTCTTATGATGGGCTT----TTTTTTTTT--ACTCTAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      82454 96 -    486031 TTTCTATAATAGTGAGTTCTTTCCACATTTAC---GTGTTGTTTCTCGCTTGGCATAAATTAAGTTCTTATGATGGGTTT----TTTTTTCTTTTATTCTAGT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     163495 94 -   1411461 TTTCTGTAATAGTGAGTGCTTTCCACATTCATGTGGTGTTGTTTCTGGCTTGACATAAATCAAGTTCTTATAATGGAC------TTTTTATT---ACTTTAGT
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr35            26337311 97 +  26524999 TTTCTGTAATAGTAAGTCTGTTCCACACCTAT---GTGCTATTTCTGCTTTGACATAAATTAACTTTTTATAGTAGCACAATATACTTTTTT---ACTCTAGC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e otoGar3.GL873550           314844 190 +  18854210 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=207269.000000
s hg38.chr6_GL000254v2_alt  1486955 21 +   4827813 CCATTGATTATTCTTTCTGTT------------
s panTro5.chr6             30356372 21 + 175400573 CCattgattattctttctatt------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590719 21 + 173848474 CCattgattattctttctgtt------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297807 21 +   2037526 CCattgattattctttctgtt------------
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842760 21 + 172585720 CCATTGATTATTCTTCCTGTT------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30132243 21 - 170955103 CCATTGATTATTCTTCCTGTT------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     381467 21 +   1495729 CCATTGATTATTCTTCCTGTT------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     483191 21 -    863181 ACATTGATTATTCTTCCTGTT------------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29631621 21 -  71996105 ACATTGATTATTCTTCCTGTT------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     351556 21 -    735854 ACATTGATTATTCTTCCTGTT------------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     270134 19 -   1829203 CCATTGATTATTCTTCCTG--------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30468917 21 + 171630274 ccattgattattctctctgtt------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           276712 21 +    515838 ccattgattattctttctgtt------------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     905972 21 -   1771730 CCATTGATTATTCTTTCTGTT------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      82550 21 -    486031 CCATTGATTATTCTTTCTGTT------------
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     163589 21 -   1411461 CCGTTAATTATTTTTTCTGTT------------
i proCoq1.NW_012149775v1   C 0 I 2341
s otoGar3.GL873550           315034 12 +  18854210 ccACCCATTATT---------------------
i otoGar3.GL873550         I 190 C 0
s canFam3.chr35            26337408 33 +  26524999 CCTTTGAATATTTTTTCTGTTCTTACAGATATT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=71060.000000
s hg38.chr6_GL000254v2_alt  1486976 18 +   4827813 A---------TATAGTT--TTGACAACAT
s panTro5.chr6             30356393 25 + 175400573 attattat--tatAGTT--TTGACAACAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590740 25 + 173848474 attattat--tatAGTT--TCGACAACAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297828 25 +   2037526 attattat--tatAGTT--TTGACAACAT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842781 21 + 172585720 A---TTAT--TATGGTT--TTGAT-ACAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30132264 21 - 170955103 A---TTAT--TATGGTT--TTGAT-ACAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     381488 21 +   1495729 A---TTAT--TATGGTT--TTGAT-ACAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     483212 21 -    863181 A---TTAT--TATGGTT--TTGAT-ATAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29631642 21 -  71996105 A---TTAT--TATGGTT--TTGAT-ATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     351577 21 -    735854 A---TTAT--TATGGTT--TTGAT-ATAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     270153 20 -   1829203 ----TTAT--TATGGTT--TTGAT-ACCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30468938 20 + 171630274 a---t-----tatgattacttgat-acac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           276733 25 +    515838 a---ttatgatatgattatttgaa-acat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     905993 25 -   1771730 A---TTATGATATGATTATTTGAA-ACAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      82571 25 -    486031 A---TTATGATATGATTATTTGAA-ACAC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           315046 17 +  18854210 ---------ATATATTT--TTGAT-ACTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26337441 17 +  26524999 ---------ATGTAGTT--TTGAT-GATT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     163610 2341 -   1411461 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=583874.000000
s hg38.chr6_GL000254v2_alt  1486994 49 +   4827813 GTTACTTTATGGTTTATTTTTAAATCTAGCAGCATTTTTGCCATTTAAT
s panTro5.chr6             30356418 49 + 175400573 GTTACTTTATGGTTTATTTTTAAATCTAGCAGCATTTTTGCCATTTAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590765 49 + 173848474 GTTACTTTATGGTTTATTTTTAAATCTAGCAGCATTTTTGCCATTTAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297853 49 +   2037526 GTTACTTTATGGTTTATTTTTAAATCTAGCAGCATTTTTGCCATTTAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842802 49 + 172585720 GTTACTTTATGGTTTACTTTTAAATCTAACAGCATTTTTGCCATTTAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30132285 49 - 170955103 GTTACTTTATGGTTTACTTTTAAATCTAACAGCATTTTTGCCATTTAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     381509 49 +   1495729 GTTACTTTATGGTTTACTTTTAAATCTAACAGCATTTTTGCCATTTAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     483233 49 -    863181 GTTACTTTATGGTTTACTTTTAAATCTAACAGCATTTTTGCCATTTAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29631663 49 -  71996105 GTTACTTTATGGTTTACTTTTAAATCTAACAGCATTTTTGCCATTTAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     351598 49 -    735854 GTTATTTTATGGTTTACTTTTAAATCTAACAGCATTTTTGCCATTTAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     270173 49 -   1829203 GTTACTTTATGGTTTACTTTTAAATCTAACAGCATTTTTGCCATTTAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30468958 49 + 171630274 attacttgatagtttattttttaatctagcagcatttttgccatttaac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           276758 49 +    515838 gttacttgacggtttatttttaaatctagcagcatttttgccatttaac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     906018 49 -   1771730 GTTACTTCATGTTTTATTTTTAAATCTAGCAGCATTTTTGCCATTTAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      82596 49 -    486031 GTTACTTGATGGTTTATTTTTAAATCTAGCAGCATTTTTGCCATTTAAC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     165951 49 -   1411461 GTTACTTTATGGTTCATTTTTAAACCTAGCAGCATCTTTGCCATTTAAT
i proCoq1.NW_012149775v1   I 2341 I 59
s otoGar3.GL873550           315063 49 +  18854210 GTTACTTTATGGCTCATCTTTAAGTCTAGCAGCATCTTTGCCATTTAAT
i otoGar3.GL873550         C 0 I 36
s canFam3.chr35            26337458 43 +  26524999 ATTCCTTTTCG------TTAAAAATCTAGCAGTACCTTTGCCATATAAT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=206198.000000
s hg38.chr6_GL000254v2_alt  1487043 23 +   4827813 -AA-TTTTATTACCTG----ATATTTTTG
s panTro5.chr6             30356467 23 + 175400573 -AA-TTTTATTACCTG----ATATTTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590814 23 + 173848474 -AA-TTTTATTACCTG----ATATTTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297902 23 +   2037526 -AA-TTTTATTACCTG----ATATTTTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842851 24 + 172585720 -AATTTTTATTATCTG----ATATTTTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30132334 24 - 170955103 -AATTTTTATTATCTG----ATATTTTTG
i macFas5.chr4             C 0 I 4
s macNem1.NW_012012100v1     381558 24 +   1495729 -AATTTTTATTATCTG----ATATTTTTG
i macNem1.NW_012012100v1   C 0 I 4
s cerAty1.NW_012002535v1     483282 24 -    863181 -AATTTTTATTATCTG----ATATTTTTG
i cerAty1.NW_012002535v1   C 0 I 4
s chlSab2.chr17            29631712 24 -  71996105 -AATTTTTATTATCTG----ATATTTTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     351647 24 -    735854 -AATTTTTATTATCTG----ATATTTTTG
i manLeu1.NW_012107142v1   C 0 I 4
s colAng1.NW_012115577v1     270222 23 -   1829203 -AATTTTTATTATCTG----ATATTTTT-
i colAng1.NW_012115577v1   C 0 I 4
s calJac3.chr4             30469007 24 + 171630274 -aatttttattacctt----atatttttg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           276807 24 +    515838 -aatttttattacctt----atatttttg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     906067 24 -   1771730 -AATTTTTATTACCTT----ATATTTTTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      82645 24 -    486031 -AATTTTTATTACCTT----ATATTTTTG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           315148 23 +  18854210 --GTTTTTATTACCTG----ACATTTTGG
i otoGar3.GL873550         I 36 I 4
s canFam3.chr35            26337501 29 +  26524999 AATTTTTTATAAACTGTAAAATGTTCCTG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     166000 59 -   1411461 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=29223.000000
s hg38.chr6_GL000254v2_alt  1487066 2 +   4827813 CT
s panTro5.chr6             30356490 2 + 175400573 CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590837 2 + 173848474 CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297925 2 +   2037526 CT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842875 2 + 172585720 CT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30132362 2 - 170955103 CT
i macFas5.chr4             I 4 C 0
s macNem1.NW_012012100v1     381586 2 +   1495729 CT
i macNem1.NW_012012100v1   I 4 C 0
s cerAty1.NW_012002535v1     483310 2 -    863181 CT
i cerAty1.NW_012002535v1   I 4 C 0
s chlSab2.chr17            29631736 2 -  71996105 CT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     351675 2 -    735854 CT
i manLeu1.NW_012107142v1   I 4 C 0
s colAng1.NW_012115577v1     270249 2 -   1829203 CT
i colAng1.NW_012115577v1   I 4 C 0
s calJac3.chr4             30469031 2 + 171630274 ct
i calJac3.chr4             C 0 I 5
s saiBol1.JH378341           276831 2 +    515838 ct
i saiBol1.JH378341         C 0 I 5
s cebCap1.NW_016107755v1     906091 2 -   1771730 CT
i cebCap1.NW_016107755v1   C 0 I 5
s aotNan1.NW_018496901v1      82669 2 -    486031 CT
i aotNan1.NW_018496901v1   C 0 I 6058
s proCoq1.NW_012149775v1     166059 2 -   1411461 CT
i proCoq1.NW_012149775v1   I 59 C 0
s otoGar3.GL873550           315175 2 +  18854210 CT
i otoGar3.GL873550         I 4 C 0
s canFam3.chr35            26337530 2 +  26524999 CT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=9449.000000
s hg38.chr6_GL000254v2_alt  1487068 5 +   4827813 ----GTCTT
s panTro5.chr6             30356492 5 + 175400573 ----GTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590839 5 + 173848474 ----GTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297927 5 +   2037526 ----GTCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842877 5 + 172585720 ----GTCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30132364 5 - 170955103 ----GTCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     381588 5 +   1495729 ----GTCAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     483312 5 -    863181 ----GTCAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29631738 5 -  71996105 ----GTCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     351677 5 -    735854 ----GTCAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     270251 5 -   1829203 ----GTCAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30469038 4 + 171630274 ----ttca-
i calJac3.chr4             I 5 C 0
s saiBol1.JH378341           276838 4 +    515838 ----ttca-
i saiBol1.JH378341         I 5 C 0
s cebCap1.NW_016107755v1     906098 4 -   1771730 ----TTCA-
i cebCap1.NW_016107755v1   I 5 C 0
s proCoq1.NW_012149775v1     166061 5 -   1411461 ----GTCCT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           315177 5 +  18854210 ----GTTCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26337532 9 +  26524999 GATTACCTT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e aotNan1.NW_018496901v1      82671 6058 -    486031 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=2772092.000000
s hg38.chr6_GL000254v2_alt  1487073 257 +   4827813 TTAAGATGAGTGCTTTTTTACAATGTTTCTAAATTTCATAGATCATTCCATAAGATTTTAATGGTTATTGCATTAAATTTGTTGATTAC--TAAGAATCATGACTTTTGGGGATTTAGTTAGTCTTCTCAACCAGTACCAAGATACATCACTAACGGCTTTCCACTATGTATCTGAATCAGATATTAAATTGTCTTTACTTAAACCTCATGTGCCCTGACTCTA-TTGAGGGTAGCTATGTATTTTATAACACTA--TTTTT
s panTro5.chr6             30356497 259 + 175400573 TTAAGATGAGTGCTTTTTTACAATGTTTCTAAATTTCATAGATCATTCCATAAGATTTTAATGGTTATTGCATTAAATTTGTTGATTACTTTAAGAATCATGACTTTTGGGGGTTTAGTTAGTCTTCTCAACCACTACCGAGATACATCACTAACAGCTTTCCATTATGTATCTGAATCAGATATTAAATTGTCTTTACTTAAACCTCATGTGCCCTGACTCTA-TTGAGGGTAGCTATGTATTTTATAACACTA--TTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30590844 259 + 173848474 TTAAGATGAGTGCTTTTTTACAATGTTTCTAAATTTCATAGATCATTCCATAAGATTTTAATGGTTATTGCATTAAATTTGTTGATTACTTTAAGAATCATGACTTTTGGGGGTTTAGTTAGTCTTCTCAACCACTACCGAGATACATCACTAACAGCTTTCCATTATGTATCTGAATCAGATATTAAATTGTCTTTACTTAAACCTCATGTGCCCTGACTCTA-TTGAGGGTAGCTATGTATTTTATAACACTA--TTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     297932 259 +   2037526 TTAAGATGAGTGCTTTTTTACAATGTTTCTAAATTTCATAGATCATTCCATAAGATTTTAATGGTTATTGCATTAAATTTGTTGATTACTTTAAGAATCATGACTTTTGGGGGTTTAGTTAGTCTTCTCAACCAGTACCAAGATACATCACTAACAGCTTTCCACTATGTATCTGAATCAGATATTAAATTGTCTTTACTTAAACCTCATGTGCCCTGACTCTA-TTGAGGGTAGCTATGTATTTTATAACACCA--TTCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30842882 261 + 172585720 TTAAGATGAGGGCTTTTTTACAATGTTTCTAAATTTTATAGAGCATTCCATAAGATTTTAATGATTATTGCATTAAATGTGTTGATCACTTTAAGAATCATGACTTTTGGGGGTTTAGTTAGTCTTCTCAACTAGTACCCAGATGTATCACTAACAGTTTTCCACTATGTATCTGAATCAGATATTAAATTGTCTTTACTTAAACCTCATGTGCCCTGACTCTA-TTGAGGATAGCTATGTATTTTATAATGTTATTTTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30132369 261 - 170955103 TTAAGATGAGTGCTTTTTTACAATGTTTCTAAATTTTATAGAGCATTCCGTAAGATTTTAATGATTATTGCATTAAATTTGTTGATGACTTTAAGAATCATGGCTTTTGGGGGTTTAGTTAGTCTTCTCAACTAGTACCCAGATGTATCACTAACAGTTTTCCACTATGTATCTGAATCAGATATTAAATTGTCTTTACTTAAACCTCATGTGCCCTGACTCTA-TTGAGGATAGCTATGTATTTTATAATGTTATTTTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     381593 260 +   1495729 TTAAGATGAGTGCTTTTTTACAATGTTTCTAAATTTTATAGAGCATTCCGTAAGATTTTAATGATTATTGCATTAAATTTGTTGATGACTTTAAGAATCATGGCTTTTGGGGGTTTAGTTAGTCTTCTCAACTAGTACCCAGATGTATCACTAACAGTTTTCCACTATGTATCTGAATCAGATATTAAATTGTCTTTACTTAAACCTCATGTGCCCTGACTCTA-TTGAGGATAGCTATGTATTTTATAATGTTA-TTTTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     483317 258 -    863181 TTAAGATGAGTGCTTTTTTACAATGTTTCTAAATTTTATAGAGCATTCCGTAAGATTTTAATGATTATTGCATTAAATTTGTTGATTACTTTAAGAATCATGACTTTTGGGGGTTTAGTTAGTTTTCTCACCTAGTACACAGATATATCACTAACAGTTTTCCACTATGTATCTGAATCAGATATTAAATTGTCTTTACTTAAACCTCATGTGCCCTGACTCTA-TTGAGGATAGCTATGTATTTTATAACGTTA---TTTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29631743 256 -  71996105 TTAAGATGAGTGCTTTTTTACAATGTTTCTAAATTTTATAGAGCATTCCATAAGATTTTAATGATTATTGCATTAAATGTGTTGATTACTTTAAGAATCATGACTTTTGGGGGTTTAGTTAGTCTTCTCAACTAGTACCCAGATATATCACTAACAGTTTTCCACTATGTGTCTGAATCAGATATTAAATTGTCTTTACTTAAACCTCATGTGCCCT---CTTA-TTGAGGATAGCTATGTATTTTATAACGTTA--TTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     351682 258 -    735854 TTAAGATGAGTGCTTTTTTACAATGTTTCTAAATTTTATAGAGCATTCCATAAGATTTTAATGATTATTGCATTAAATTTGTTGATTACTTTAAGAATCATGACTTTTGGGGGTTTAGTTAGTCTTCTCAACTAGTACCCAGATGTATCACTAACAGTTTTCCACTATGTATCTGAATCAGATATTAAATTGTCTTTACTTAAACCTCATATGCCCTGACTCTA-TTGAGGATAGCTATGTATTTTATAACGTTA---TTTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     270256 258 -   1829203 TTAAGATGAGTGCCTTTTTACAATGTTTCTAAATTTTATAGAGCATTCTGTAAGATTTTAATGATTGTTGCATTAAATTTGTTGATTACTTTAAGAATCATGACTTTTGGGGGTTTAGTTAGTCTTCTCAACTAGTACCCAGATATATCACTAACAGTTTTCCACTATGTATCTGAATCAGATATTAAATTGTCTTTACTTAAACCTCATGTGCCCTGACTCTA-TTGAGGATAGCTATGTATTTTATAACGTAA---TTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30469042 257 + 171630274 ttaagatgagtgcttttttacaatgtttctaaattttacagagcattccctaagattttaatggttattgcattaaatttgttgattactttaagaatcataactttt-ggaatttatttagtcttctcaaccagtaccaagatacatcactAAAAGCTTTCCACTATGTATTTGAATCAGATACTAGATTTTCTCTACTTAAACCTCATGTACCCTGACTCTA-TTTAGGGTAACTATATATTTTATAACATTA---TTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           276842 257 +    515838 ttaagatgagtgcttttttccaatgtttctaaattttacagagcattccctaagagtttaatggttattgcattaaatttgttgattactttaaaaataataactttt-ggtatttatttagttttctcaaccagtaccaagatatatcactGAAAGCTTTCCACTATGTATTTGAATCAGATACTAAATTTTCTCTACTTAAACCTCATGTGCCCTGACTCTA-TTGAGGATAGCTATATATTTTATAACATTA---TTTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     906102 257 -   1771730 TTAAGAAGAGTGCTTTTTTACAATCTTTCTAAATTTTACAGAGCATTCCCTAAGATTTTAATGGTTATTGCATTAAATTTGTTGATTACTTTAAAAATTATAACTTTT-GGGATTTTTTTATTCTTCTCAACCAGTACCAAGATATATCACTAAAAGCTTTCCACTATGTATTTGAATCAGATACTAAATTTTCTCTACTTCAACCTCATGTGCCCTGACTCTA-TTCAGGGTAACTATATATTTTATAACATTA---TTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      88729 257 -    486031 TTAAGATGAGTGCTTTTTTACAATGTTTCTAAATTTTACAGAGCATTCCCTAAGGTTTTAATGGTTATTGCATTAAATTTGTTGATTACTTTAAAAATCATAACTTTT-GGGATTTATTTAGTCTTCTCAATCAGTACCAAGATACATCACTAAAAGCTTTCCACTATGCATTTGAATCAGATACTAAATTTTCTCTACTTAAACCTCATGTGCCCTGACTCTG-TTGAGGGTACCTATATATTTTATAACATTA---TTTT
i aotNan1.NW_018496901v1   I 6058 C 0
s proCoq1.NW_012149775v1     166066 258 -   1411461 TTCAGATGAATGCTCTCGTACAATGTTTCTGAGTTTTACAGAGCATTGCCTCAGATTTCAATGGTCATTGCATTAAATTTATTGATTACTTTAAGAATCATGAGTTTTGGGTGCTTATTTAGTCTTCTCAACCAGTAGCAGGATATATCCCTGTGAGTTTTCCTTCACATATCTGAATCAGATGTTAAATTGTCTTTATTTAAACCTCCTGTGCCCCGAATCTA-TTAGGAGTAGCTATATAGTTTATAACATTA---GTTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           315182 253 +  18854210 TTCAGATGAATGCTCTCATACAAGGTTGCTAAGTTTTATAGAGGATTCCCTTAGATT----TGGTCATGGCATTAAATTTGTTGGTTACTTTAAGAATCATCACTTTGAGGAGTTTCTTTCATTTTCTCAACCAGTAACTGGATATATCACTAAGAGTTTTCCTTTACATATCTGAATC--ATATTAACTTGTCTTTATTTAAAGTTCATGTGCCCTAACTCTATTTAAGAGTAGCTATATATTTTATAATGTTG---GATT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26337541 229 +  26524999 TTCAGAGGCATCTTCTTATTCAGTGCTTCTGAGTTT-ATAGAGCATTCCTTCAG--TATAATTG-CACTGCATTAAACTTGTTGGTTACATTAAGAATTATGACTTTTGAGGGCTCACTTA-CCTTCTCAACCAATAGCAGGATATATCACCGAGGATTTTCT-TCGCATTTCTGAATCAGATG-----------TTATTTAAACCT-------------TGTA-TTGAGAGTAGATATATATTTTATAAGGTTC--GTTTT
i canFam3.chr35            C 0 I 6046
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=5496.000000
s hg38.chr6_GL000254v2_alt  1487330 1 +   4827813 T-
s panTro5.chr6             30356756 1 + 175400573 T-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30591103 1 + 173848474 T-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     298191 1 +   2037526 T-
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30843143 1 + 172585720 T-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30132630 1 - 170955103 T-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     381853 1 +   1495729 T-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     483575 1 -    863181 T-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29631999 1 -  71996105 T-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     351940 1 -    735854 T-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     270514 1 -   1829203 T-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30469299 1 + 171630274 T-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           277099 1 +    515838 T-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     906359 1 -   1771730 T-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      88986 1 -    486031 T-
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     166324 2 -   1411461 TT
i proCoq1.NW_012149775v1   C 0 I 5901
s otoGar3.GL873550           315435 1 +  18854210 T-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e canFam3.chr35            26337770 6046 +  26524999 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=667893.000000
s hg38.chr6_GL000254v2_alt  1487331 75 +   4827813 TTGACAATTTTTAC--TTGTAGATTCAAATGAGATTCTTTGCTGAGCTCATGTATTTAC-CATACATTTTTTAAA--ATT-
s panTro5.chr6             30356757 76 + 175400573 TTGACAATTTTTAC--TTGTAGATTCAAATGAGATTCTTTGCTGAGCTCATGTATTTACTCATATATTTTTTTAA--ATT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30591104 76 + 173848474 TTGACAATTTTTAC--TTGTAGATTCAAATGAGATTCTTTGCTGAGCTCATGTATTTACTCATATATTTTTTTAA--ATT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     298192 76 +   2037526 TTGACAATTTTTAC--TTGTAGATTCAAATGAGATTCTTTGCCGAGCTCATGTATTTACTCATACATTTTTTTAA--ATT-
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30843144 76 + 172585720 TTGACAATTTTTAC--TTGTAGATTCAAATGAGGTTCTTTGCTGAGCTCATGTATTTACTCATACTTTTTTTTTT--AAT-
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             30132631 76 - 170955103 TTGACAATTTTTAC--TTGTAGATTCAAATGAGGTTCTTTGCTGAGCTCATGTATTTACTCATACTTTTTTTTTT--AAT-
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     381854 76 +   1495729 TTGACAATTTTTAC--TTGTAGATTCAAATGAGGTTCTTTGCTGAGCTCATGTATTTACTCATACTTTTTTTTTT--AAT-
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     483576 76 -    863181 TTGACAATTTTTAC--TTGTAGATTCAAATGAGGTTCTTTGCTGAGCTCATGTATTTACTCATACATTTTTTTTA--AAT-
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29632000 76 -  71996105 TTGACAATCTTTAC--TTGTAGATTCAAATGAGGTTCTTTGCTGAGCTCATGTGTTTACTCATATATTTTTTAAA--AAT-
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1     351941 76 -    735854 TTGACAATTTTTAC--TTGTAGATTCAAATGAGGTTCTTTGCTGAGCTCATGTATTTACTCATACATTTTTTTTA--AAT-
i manLeu1.NW_012107142v1   C 0 I 1
s colAng1.NW_012115577v1     270515 76 -   1829203 TTGACAATTTTTAC--TTGTAGATTCAAATGAGGTTCTTCGCTGAGCTCATGTATTTACTCATAGATTTTTTAAA--AAT-
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30469300 76 + 171630274 TTGACAATTTGTAT--TTGAAGATTCAAATGAGGTTCTTTGCTGAGCTCATGTATTTACTCATACATTTTTTAAA--ACT-
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           277100 78 +    515838 TTGACAATTTGTATGCTTGAAGATTCAAATGAGGTTTTTTGTTGAACTCATGTATTTACTCATGCATTTTAAAAA--ATT-
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     906360 76 -   1771730 TTGACAATTTGTAT--TTGAAGATTTAAATGAGGTTCTTTGCTGAACTCATGTATTTACTCATACATTTTTTAAA--ACT-
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496901v1      88987 76 -    486031 TTGACAATTTGTAT--TTGAAGATTCAAATGAGGTTCTTTGCTGAGCTCATGTATTTACTCATACATTTTTTAAA--ATT-
i aotNan1.NW_018496901v1   C 0 I 1
s otoGar3.GL873550           315436 79 +  18854210 TTACCAGTTTGGAC--TTGTAGATTCAAATAAGACTCTTTGCTGAGGTCATATATTTATGCATATATCCTTTAAGTTAATA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     166326 5901 -   1411461 I
e canFam3.chr35            26337770 6046 +  26524999 I
e nomLeu3.chr1a            74963212 869 + 122973662 M

a score=2044130.000000
s hg38.chr6_GL000254v2_alt  1487406 248 +   4827813 TTCTGACATTTTCTAGATCATAATTGTGTGAGTGATGTTGTTTTTAATTCATATTTTTGGACAC----AGTTCTGTAAGGAGCATGCATTTTGAAAGCTGTTAAtttttcttt----------t--ttttttttttttCAGTGTCAGGGATAGGTACTTTTTGTCTGTTAACCACTTTTCTTTTGT----ACATTGTGTTAGCAAGTTGTTTAAGAACAAATTTAATGCCC--TT-TTTT-GTCAGATTTTAAAAATTTAATATGATTTAAT
s panTro5.chr6             30356833 248 + 175400573 TTCTGACATTTTCTAGATCATAATTGTGTGAGTGATGTTGTTTTTAATTCATATTTTTGGACAC----AGTTCTGTAAGGAGCATGCATTTTGAAAGCTGTTAAtttttcctt----------t--ttttttttttttCAGTGTCAGGGATAGGTACTTTTTGTCTGTTAACCACTTTTCTTTTGT----ACATTGTGTTAGCAAGTTGTTTAAGAACAAATTTAACGCCC--TT-TTTT-GTCAGATTTTAAAAATTTAATATGATTTAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30591180 244 + 173848474 TTCTGACATTTTCTAGATCATAATTGTGTGAGTGATGTTGTTTTTAATTCATATTTTTGGACAC----AGTTCTGTAAGGAGCATGCATTTTGAAAGCTGTTAATTTTTC----------------TTTTTTTTTTTTCAGTGTCAGGGATAGGTACTTTTTGTCTGTTAACCACTTTTCTTTTGT----ACATTGTGTTAGCAAGTTGTTTAAGAACAAATTTAACGCCC--TT-TTTT-GTCAGATTTTAAAAATTTAATATGATTTAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     298268 245 +   2037526 TTCTGACATTTTCTAGATCATAATTGTGTGAGTGATGTTGTTTTTAATTCATATTTTTGGACAC----AGTTCTGTAAGGAGCATGCATTTTGAAAGCTGTTAAtttttc-------------t--ttttttttttttCAGTGTCAGGGATAGGTACTTTTTGTCTGTTAACCACTTTTCTTTTGT----ACATTGTGTTAGCAAGTTGTTTAAGAACAAATTTAATGCCC--TT-TTTT-GTCAGATTTTAAAAATTTAATATGATTTAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74964081 246 + 122973662 TTCTGACATTTTCTAGATCATAATCATGTGAGTGATGTTGTTTTTAATCCATATTTTTGGACAC----AGTTCTGTAAGGAGCATGCATTTTGAAAGCTATCAATTTTTC-------------T--TTCTTTTTTTTTCAGTGTCAGGGATACGTACTTTTTGTCTGTTAACCACTTTTCTTTTGT----ACACTGTATTAGCAAGTTGTTTGAGAACAAATTTAATGCCC--TTCTTTT-GTCAGATTTTAAAAATTTAATATGATTTAAT
i nomLeu3.chr1a            M 869 C 0
s rheMac8.chr4             30843221 262 + 172585720 TTCTGACATTTTCTAGATCATAATCATGTGAGTGATGTTATTTTTAATCCATATTTTTGGACAC----AGTTCTGTAAGGAGCACGCATTTTGAAAGCTGTTAAtttttcttttttttctttct--ttttttttttttAAGCGTCTGGGATAGGTACTTCTTGTCTGTTAACCACTTTTCTTTTGTACCAACGTTGTGTTAGCAAGTTGTTTTAGAACAAATTTAATGCCC--TT-TTTT-GTCAGATTTTAAAAATTTAATATGATTTAAT
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30132708 262 - 170955103 TTCTGACATTTTCTAGATCATAATCATGTGAGTGATGTTATTTTTAATCCATATTTTTGGACAC----AGTTCTGTAAGGAGCACGCATTTTGAAAGCTGTTAAtttttcttttttttctttct--ttttttttttttAAGCGTCTGGGATAGGTACTTCTTGTCTGTTAACCACTTTTCTTTTGTACCAACGTTGTGTTAGCAAGTTGTTTTAGAACAAATTTAATGCCC--TT-TTTT-GTCAGATTTTAAAAATTTAATATGATTTAAT
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     381931 262 +   1495729 TTCTGACATTTTCTAGATCATAATCATGTGAGTGATGTTATTTTTAATCCATATTTTTGGACAC----AGTTCTGTAAGGAGCACGCATTTTGAAAGCTGTTAAtttttctttttttttttttt--ttttttttttttAAGCGTCTGGGATAGGTACTTCTTGTCTGTTAACCACTTTTCTTTTGTACCAACGTTGTGTTAGCAAGTTGTTTTAGAACAAATTTAATGCCC--TT-TTTT-GTCAGATTTTAAAAATTTAATATGATTTAAT
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     483653 258 -    863181 TTCTGACATTTTCTAGATCATAATCATGTGAGTGATGTTGTTTTTAATCCGTATTTTTGGACAC----AGTTCTGTAAGGAGCATGCATTTTGAAAGCTGTTAAtttttctttttttctttctt--tcttttttttttAAGTGTCAGGGATAGGTACTTCTTGTCTGTTAACCACTTTTGTTTTGT----ATGTTGTGTTAGCAAGTTGTTTTAGAACAAATTTAATGCCC--TT-TTTT-GTCAGATTTTAAAAATTTAATATGATTTAAT
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29632077 263 -  71996105 TTCTGACATTTTCTAGGTCATAATCATGTGAGTGATGTTGTTTTTAATCCACATTTTTGGACAC----AGTTCTGTAAGGAGCATGCATTTTGAAAGCTGTTAAtttttctttttttctttcttt-ttttttttttttAAGTATCAGGGATAGGTACTTCTTGTCTGTTAACCACTTTTCTTTTGTACCAACATTGTGTTAGCAAGTTGTTTTAGAACAAATGTAATGCCC--TT-TTTT-GTCAGATTTTAAAAATTTAATATGATTTAAT
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1     352018 260 -    735854 TTCTGACATTTTCTAGATCATAATCATGTGAGTGATGTTGTTTTTAATCCGTATTTTTGGACAC----AGTTCTGTAAGGAGTATGCATTTTGAAAGCTGTTAAtttttctttttttctttctttcttttttttttttAAGTGTCAGGGATAGGTACTTCTTGTCTGTTAACCACTTTTGTTTTGT----ACGTTGTGTTAGCAAGTTGTTTTAGAACAAATTTAATGCCC--TT-TTTT-GTCAGATTTTAAAAATTTAATATGATTTAAT
i manLeu1.NW_012107142v1   I 1 C 0
s colAng1.NW_012115577v1     270592 260 -   1829203 TTATGACATTTTCTAGATCATAATCATGTGAGTGATGTTGTTTTTAATCCATATTTTTGGACAC----AATTCTGTAAGGAGCATGCATTTTGAAAGCTGTTAAtttttcttttttttctttctttttttttttttttAAGTGTCAGGGATAGGTACTTCTTGTCTGTTAACCACTTTTCTTTTGT----ACGTTGTGTTAGCAAGTTGTTTTAGAACAAATTTAATGCCC--TT-TTTT-GTCAGATTTTAAAAATTTAATATGATTTAAT
i colAng1.NW_012115577v1   I 1 C 0
s calJac3.chr4             30469377 189 + 171630274 TTCTAACATTTTCTAGATCATAATCATGTGAGTGA---TATTTTAAATCCATATTTTGGGACAC----AGTTCTATAAGGAGCATGCATTTTGAAAGCTGTTAATTTTTC------------TT--TTTTTT---TTTTAATGTCAGGGATAGGTACTTCTTGTCTGTT------------------------------------------------------TAATGCCC--TT-TTTTGGACAGATTTTTAAAATTTA--ATGATTTAAT
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           277179 194 +    515838 TTCCGACATCTTCTAGATCATAATCATATGAATGA---TATTTTACATCCACATTTTGGGACTC----AGTTCTATAAGGAGCATGCATTTTGAAAGCTGTTAATCTTTC------------TC--TTTTTTCCCCCCTAGTATCAGGGATAGGTACTTCTTGTCTGTT------------------------------------------------------TAATGCCCTTTT-TTTTGGTCAGATTTTTAAAATTTA--ATGATTTAAT
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     906437 202 -   1771730 TTCTGACATTTTCTAGATCATAATCATGTGAGTGA---TATTTTAAATCCATATTTTGGGACAC----AGTTCTATAAGGAGCATGCATTTTGAAAGCTGTTAAtttttctttctttc---ttt--tttttttttttCTAATGTCAGGGATAGATACTTCTTATCTGTT------------------------------------------------------TAATGCCC-TTT-TTTTGGTCAGATTTTTAAAATTTA--ATGATTTAAT
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496901v1      89064 192 -    486031 TTCTGACATTTTCTAGATCATAATCATGTGAGTGA---TATTGTAAATCCACATTTTGGGACAC----AGTTCTATAAGGAGCATGCATTTTGGAAGCTGTTAATTTTTC------------TT--TTTTTTTTCTTCTAATGTCAGGGATAGGTACTTCTTGTCTGTT------------------------------------------------------TAATGCCC--TT-TTTTGGGCAGATTTTTAAAATTTA--ATGATTTAAT
i aotNan1.NW_018496901v1   I 1 C 0
s otoGar3.GL873550           315515 226 +  18854210 TTATGTTGTTTTCTAGATCATAATCATGAGGGAAATGTCATTTTTATCC---ACCTTGGGAAGCTATTTGTTCT-TAAGGAGTGTGCATTTTGAAAGTTGGTAATATTAT----------------TTACT---------GTGTCAGAGATACATACTTTTCATCTAACAAC--TTTTTCTTTTAT----TTATT-TGTTAGTAAGTTG----AGAACAAATGT-ATGTTA--AT-GTT--GCTAGTTTCTCATGTTTCACCATCATTTAAT
i otoGar3.GL873550         C 0 I 417
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     166326 5901 -   1411461 I
e canFam3.chr35            26337770 6046 +  26524999 I

a score=34920.000000
s hg38.chr6_GL000254v2_alt  1487654 3 +   4827813 CTG
s panTro5.chr6             30357081 3 + 175400573 CTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30591424 3 + 173848474 CTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     298513 3 +   2037526 CTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74964327 3 + 122973662 CTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30843483 3 + 172585720 CTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30132970 3 - 170955103 CTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     382193 3 +   1495729 CTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     483911 3 -    863181 CTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29632340 3 -  71996105 CTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     352278 3 -    735854 CTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     270852 3 -   1829203 CTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30469566 3 + 171630274 CTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           277373 3 +    515838 CTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     906639 3 -   1771730 CTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      89256 3 -    486031 CTG
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     166326 5901 -   1411461 I
e canFam3.chr35            26337770 6046 +  26524999 I
e otoGar3.GL873550           315741 417 +  18854210 I

a score=93900.000000
s hg38.chr6_GL000254v2_alt  1487657 10 +   4827813 AA----TGACAGAA
s panTro5.chr6             30357084 10 + 175400573 AA----TGACAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30591427 10 + 173848474 AA----TGACAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     298516 10 +   2037526 AA----TGACAGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74964330 14 + 122973662 AATGTCTGACAGAA
i nomLeu3.chr1a            C 0 I 320
s rheMac8.chr4             30843486 14 + 172585720 AAAGTCTGACATAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30132973 14 - 170955103 AAAGTCTGACATAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     382196 14 +   1495729 AAAGTCTGACATAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     483914 14 -    863181 AAAGTCTGACAGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29632343 14 -  71996105 AAAGTCTGACAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     352281 14 -    735854 AAAGTCTGACAGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     270855 14 -   1829203 AAAGTCTGACAGAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30469569 14 + 171630274 AATGTCTGACAGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           277376 14 +    515838 AATGTCTGACAGAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     906642 14 -   1771730 AATGTCTGACAGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      89259 14 -    486031 AATGTCTGACAGAA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           316158 10 +  18854210 ----AGTGACAAAC
i otoGar3.GL873550         I 417 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     166326 5901 -   1411461 I
e canFam3.chr35            26337770 6046 +  26524999 I

a score=10920.000000
s hg38.chr6_GL000254v2_alt  1487667 1 +   4827813 T
s panTro5.chr6             30357094 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30591437 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     298526 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30843500 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30132987 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     382210 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     483928 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29632357 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     352295 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     270869 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30469583 1 + 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           277390 1 +    515838 T
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     906656 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      89273 1 -    486031 T
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           316168 1 +  18854210 T
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     166326 5901 -   1411461 I
e canFam3.chr35            26337770 6046 +  26524999 I
e nomLeu3.chr1a            74964344 320 + 122973662 I

a score=1053288.000000
s hg38.chr6_GL000254v2_alt  1487668 102 +   4827813 -TTTAAAATATTCATTTAGACAAGACAGGTCTTCGACTATTTTCTAGATTTCAACTTG---TCTTTTTTTCTCTGAGGAATATTTTGGTAGGTGAAAGTGTATAGA
s panTro5.chr6             30357095 102 + 175400573 -TTTAAAATATTCATTTAGACAAGACAGGTCTTCGACTATTTTCTAGATTTCAACTTG---TCTTTTTTTCTCTGAGGAATATTTTGGTAGGCGAAAGTGTATAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30591438 102 + 173848474 -TTTAAAATATTCATTTAGACAAGACAGGTCTTCGACTATTTTCTAGATTTCAACTTG---TCTTTTTTTCTCTGAGGAATATTTTGGTAGGTGAAAGTGTATAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     298527 102 +   2037526 -TTTAAAATATTCATTTAGACAAGACAGGTCTTCGACTATTTTCTAGATTTCAACTTG---TCTTTTTTTCTCTGAGGAACATTTTGGTAGGTGAAAGTGTATAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74964664 102 + 122973662 -TTTAAAATATTCATTTAGACAAGACAGGTCTTCGACTATTTTCTAGATTTCAACTTG---TCTTTTTTTCTCTAAGGAATATTTTGGTAGGTGAAAGTGTATAGA
i nomLeu3.chr1a            I 320 C 0
s rheMac8.chr4             30843501 102 + 172585720 -TTTAAAATACTCATTTAGACAAAACATGTCTTTGACTATTTTCTAGATTTCAACTTG---TCTTTTTTTCTCTAAGGAATATTTTGGTAGGTGGAAGTGTACAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30132988 102 - 170955103 -TTTAAAATACTCATTTAGACAAAACATGTCTTTGACTATTTTCTAGATTTCAACTTG---TCTTTTTTTCTCTAAGGAATATTTTGGTAGGTGGAAGTGTACAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     382211 102 +   1495729 -TTTAAAATACTCATTTAGACAAAACATGTCTTTGACTATTTTCTAGATTTCAACTTG---TCTTTTTTTCTCTAAGGAATATTTTGGTAGGTGGAAGTGTACAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     483929 102 -    863181 -TTTAAAATACTCATTTAGACAAAACATGTCTTTGACTATTTTCTAGATTTCAACTTG---TCTTTTTTTCTCTAAGGAATATTTTGGTAGGTGAAAGTGTACAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29632358 102 -  71996105 -TTTAAAATACTCGTTTAGACAAAACATGTCTTCGACTATTTTCTAGACTTCAACTTG---TCTTTTTTCCTCTAAGGAATATTTTGGTAGGTGAAAGTGTACAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     352296 102 -    735854 -TTTAAAATACTCATTTAGACAAAACATGTCTTTGACTATTTTCTAGATTTCAACTTG---TCTTTTTTTCTCTAAGGAATATTTTGGTAGGTGAAAGTGTACAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     270870 102 -   1829203 -TTTAAAATATTCATTTAGACAAAACATGTCTTCAACTATTTTCTAGATTTCAACTTG---TCTTTTTTTCTCTAACGAATATTTTGGTAGGTGAAAGTGTACAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30469584 102 + 171630274 -TTTAAaatactcattgagataagacaggccttcggctgttttctagatttcagTTTG---TCTTTCTTTCGCTAAGGAATATTTTAGTAGGTGGAAGTGTACAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           277391 100 +    515838 -TTTAAAATATTCATTTAGATAAGACAGGCCTTTGACTATTTTCTAGATTTCAATT-----TCTTTTTTTCGCTAAGGAATATTTTGGTAGGTGGAAGTGTATAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     906657 105 -   1771730 -TTTAAAATATTCATTTAGATAAGACAGGCCTTTGACTATTTTCTAGATTTCAATTTGTCTTTTTTTTTTTGCTAAGGAATATTTTGGTAGGTGGAAGTGTGTAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      89274 102 -    486031 -TTTAAAATATTCATTTAGATAAGACAGGCCTTCGACTATTCTCTAGATTTCAATTTG---TCTTTATTTCACTAAGGAATATTTTGGTAGGTGGAAGTGTATAGA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           316169  94 +  18854210 TTTAAAAATATTCTTTAAAGCAAGACAGGCCTTAGACTACTTTCTATATTTC---TTT---TTTTTTTTTTCCT------TTTTTTAATTGCTGAGGATTCATTGA
i otoGar3.GL873550         C 0 I 436
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     166326 5901 -   1411461 I
e canFam3.chr35            26337770 6046 +  26524999 I

a score=20010.000000
s hg38.chr6_GL000254v2_alt  1487770 2 +   4827813 AT
s panTro5.chr6             30357197 2 + 175400573 AT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30591540 2 + 173848474 AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     298629 2 +   2037526 AT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74964766 2 + 122973662 AT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30843603 2 + 172585720 AT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30133090 2 - 170955103 AT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     382313 2 +   1495729 AT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     484031 2 -    863181 AT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29632460 2 -  71996105 AT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     352398 2 -    735854 AT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     270972 2 -   1829203 AT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30469686 2 + 171630274 AT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           277491 2 +    515838 AT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     906762 2 -   1771730 AT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      89376 2 -    486031 AC
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     166326 5901 -   1411461 I
e canFam3.chr35            26337770 6046 +  26524999 I
e otoGar3.GL873550           316263 436 +  18854210 I

a score=937169.000000
s hg38.chr6_GL000254v2_alt  1487772 89 +   4827813 TTAGCTTTCCAATTCTAGTGA-----GTGTCTTATTTATATTATATGCACCCATTAAAT---ACTTTTATGCAAAAA-TTGGTGAAAAAGTACTTTTT
s panTro5.chr6             30357199 89 + 175400573 TTAGCTTTTCAATTCTAATGA-----GTGTCTTATTTATATTATATGCACCCATTAAAT---ACTTTTATGCAAAAA-TTGGTGAAAAAGTACTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30591542 89 + 173848474 TTAGCTTTTCAATTCTAATGA-----GTGTCTTATTTATATTATATGCACCCATTAAAT---ACTTTTATGCAAAAA-TTGGTGAAAAAGTACTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     298631 89 +   2037526 TTAGCTTTTCAATTCTAATGA-----GTGTCTTGTTTATATTATATGCACCCATTAAAT---ACTTTTATCCAAAAA-TTGGTGAAAAAGTACTTTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74964768 94 + 122973662 TTGGCTTTTCAGTTCTAATGAGTGTCGTGTCTTATTTATATGATATGCACCCATTAAAT---ATTTTAACGCAAAAA-TTGATGAAAAAGTATTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30843605 89 + 172585720 TTGGCATTTCAATTCTAATGA-----GTGTCTCATTTATATGATATGCACCCATTAAAT---ATTTTAATGCAAAAA-TTGGTGAAAAAGTATTTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30133092 89 - 170955103 TTGGCGTTTCAATTCTAGTGA-----GTGTCTCATTTATATGATATGCACCCATTAAAT---ATTTTAATGCAAAAA-TTGGTGAAAAAGTATTTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     382315 89 +   1495729 TTGGCGTTTCAATTCTAATGA-----GTGTCTCATTTATATGATATGCACCCATTAAAT---ATTTTAATGCAAAAA-TTGGTGAAAAAGTATTTTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     484033 89 -    863181 TTGGCGTTTCAATTCTAATGA-----GTGTCTTATTTATATGATATGCACCCATTAAAT---ATTTAAATGCAAAAA-TTGGTGAAAAAGTATTTTTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29632462 89 -  71996105 TTGACATTTCAATTCTAATGA-----GTGTCTTATTTATATGATATGCACCTATTAAAT---ATTTTAATGCAAAAA-TTGGTGAAACAGTATTTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     352400 89 -    735854 TTGGCGTTTCAATTCTAATGA-----GTGTCTTATTTATATGATATGCACCCATTAAAT---ATTTTAATGCAAAAA-TTGGTGAAAAAGTATTTTTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     270974 89 -   1829203 TTGGCGTTTCAATTCTAATGA-----GTGTCTTATTTATATGATATGCACCCATTAAAT---ATTTTAATGTAAAAA-TTGGTGAAAAAGTATTTTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30469688 89 + 171630274 TTGGTTTTTCAATTCTAATGA-----GTGACTTACTTATATGCTATGCACCCATCAAAT---ATTTTAATGCAAAAA-TTGGTGGAAAAGCATTTTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           277493 89 +    515838 TTGGTTTTTCAATTCTAATGA-----GTGTCCTATTTATATGCTCTGCACCCATTAAAT---ATTTTAATGCCAAAA-TTGGTGAAAAAGCATTTTTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     906764 89 -   1771730 TTGGTTTTTCAATTCTAATGA-----GTGTCTTATTTATATGCTATGCATCCATTAAAT---ATTTTAATGCAAAAA-TTGGTGAAAAAGCATTTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      89378 89 -    486031 TTGGTTTTTCAATTCTAATGA-----GTGACTTATTTATATGCTATGCACCCATTAAAT---ATTTTAATGCAAAAA-TTGGTGAAAAAGTATTTTTT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           316699 93 +  18854210 TTTGCTTTTTAATTCCAATGA-----GTGCCTTATTCACATGATATAAACCCATCAAATATCATTTTAATGAAAAAAGTTGATGAATAAGTATTTTTT
i otoGar3.GL873550         I 436 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     166326 5901 -   1411461 I
e canFam3.chr35            26337770 6046 +  26524999 I

a score=1477968.000000
s hg38.chr6_GL000254v2_alt  1487861 143 +   4827813 AGAAACAGAGGACTTTACCTTACTCATTTTGAATATTGTAAACAATATGACTGTATTATCTTCAGTCATTCTATGCCTTTATCTTTATTACTGTTATCTTTGCCTTCT----------TTTTTTCATTTACACAGTGTCTGTAGTTGGCTTTA
s panTro5.chr6             30357288 143 + 175400573 AGAAACAGAGGACTTTACCTTACTCATTTTGAATATTGTAAACAATATGACTGTATTATCTTCAGTCATTCTATGCCTTTATCTTTATTGCTGTTATCTTTGCCTTCT----------TTTTTTCATTTACACAGTGTCTGTAGTTGGCTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30591631 143 + 173848474 AGAAACAGAGGACTTTACCTTACTCATTTTGAATATTGTAAACAATATGACTGTATTATCTTCAGTCATTCTATGCCTTTATCTTTATTGCTGTTATCTTTGCCTTCT----------TTTTTTCATTTACACAGTGTCTGTAGTTGGCTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     298720 143 +   2037526 AGAAACAGAGGACTTTACCTTACTCATTTTGAATATTGTAAACAATATGACTGTATTATCTTCAGTCATTCTATGCCTTTATCTTTATTGCTGTTATCTTTGCCTTCT----------TTTTTTCATTCACACAGGGTCTGTAGTTGGCTTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74964862 142 + 122973662 AGAAACAGAGGA-TTTACCTTACTCATTTTGAATATTGTAAGCAATATGCCTGTATTATCTTCAGTTGTTCTATGCCTTTATCTTTATTGCTGTAATCTTTGCCTTCT----------TTTTTTCATTTACACAATGCCTGTAGTTGGCTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30843694 132 + 172585720 AGAAACAGAGGACTTTACCTTACTCATTTTGAATATTATAAACAATATGTCTGTATTATCTTCAGTTGTTCTATGCCTTTATCTTTATTGCTGTTATCTTTGC---------------------CATTTACACAGTGTCTGTAGTCGGGTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30133181 132 - 170955103 AGAAACAGAGGACTTTACCTTACTCATTTTGAATATTATAAACAATATGTCTGTATTATCTTCAGTTGTTCTATGCCTTTATCTTTATTGCTGTTATCTTTGC---------------------CATTTACACAGTGTCTGTAGTCGGGTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     382404 132 +   1495729 AGAAACAGAGGACTTTACCTTACTCATTTTGAATATTATAAACAATATGTCTGTATTATCTTCAGTTGTTCTATGCCTTTATCTTTATTGCTGTTATCTTTGC---------------------CATTTACACAGTGTCTGTAGTCGGGTTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     484122 132 -    863181 AGAAACAGAGGACTTTACCTTACTCATTTCGAATATTATAAACAATATGTCTGTAATATCTTCAGTTGTTCTATGCCTTTATCTTTATTGCTGTTATCTTTGC---------------------CATTTACACAGTGTCTGTAGTCGGGTTTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29632551 132 -  71996105 AGAAACAGAGGACTTTACCTTACTCATTTCGAATATTATAAACAATATGTCTGTATTATCTTCAGTTGTTCTATGCCTTTATCTTTATTGCTGTTGTCTTTGC---------------------CATTTACACAGTGTCTGTAGTCGGGTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     352489 130 -    735854 AGAAACAGAGGAC--TACCTTACTCATTTCGAATATTATAAACAATATGTCTGTATTATCTTCAGTTGTTCTATGCCTTTATCTTTATTGCTGTTATCTTTGC---------------------CATTTACACAGTGTCTGTAGTCAGGTTTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     271063 132 -   1829203 AGAAACAGAGGACTTTACCTTACTCATTTTGAATATTATAAACAATATGTCTGTGTTATCTTCAGTTGTTCTATGCCTTTATCTTTATTGCTGTTATCTTTGC---------------------CATTTACACAGTGTCTGTAGTCGGCTTTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30469777 142 + 171630274 AGAAACGGAGGACTTTACCTTACTCATTTTGAATATTGTAAATGTTATGAATGTATTATCTTCAGTTGTTCTATGCTTTTATCTTTATTGCCGTTATCTTTGCCTTCT----------TTTTT-CATTTACGCAGTGCCTGTAGTCAACTTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           277582 142 +    515838 AGAAACAGAGGACTTTACCTTACTCATTTTGAATATTGTAAGTGATATGAATGTATTCTCTTCAGTTGTTCTGTGCTTTTATCTTTATTGCTGTTATCTTTGCCTTCT----------TTTTT-CATTTACACAGTGCCTGTAGTTGACTTTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     906853 142 -   1771730 AGAGACAGAGGACTTTACCTTACTCATTTTGAATATTGTAAATGATATGAATGTATTATCGTCAGTTGTTCTATGCTTTTATCTTTATTGCTGTTATCTTTGCCTTCT----------TTTTT-CATTTACACAGTGCCTGTAGTTGACTTTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      89467 142 -    486031 AGAAACAGAGGACTTTACCTTACTCATTTTGAATATTGTAAATGATATGAATGTATTATCTTCAGTTGTTCTATGCTTTTATCTTTATTGCTGTTATCTTTGCCTTCT----------TTTTT-CATTTACACAGTGCCTGTAGTTGACTTTA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           316792 149 +  18854210 TAAAACCAAAGACTTTACCTTATTCATTTTGAAAACT---AACAATATGACTGTGTTATCTTCAATTGTTCCATGTGTTTATCTTTATTGCTGTTATCTTTGCTCTCTATCTTTGTTCTCTTTTCATT-GCACAGTGTCTGTAGTTGAATGTA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26343816 129 +  26524999 aaaaaaagaGGACTTTA----------TTTGAATATTATAAATGATATATCTGTATTATCTTTGATTATTTCATGCATTTATATTTATTACT---ATCTTTGCTTTAT----------TTTTT-AGCTTATAGAATGTTTGCAATTGACTTCA
i canFam3.chr35            I 6046 I 252
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     166326 5901 -   1411461 I

a score=12376.000000
s hg38.chr6_GL000254v2_alt  1488004 1 +   4827813 T
s panTro5.chr6             30357431 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30591774 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     298863 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74965004 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30843826 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30133313 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     382536 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     484254 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29632683 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     352619 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     271195 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30469919 1 + 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           277724 1 +    515838 T
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     906995 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      89609 1 -    486031 T
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           316941 1 +  18854210 T
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     166326 5901 -   1411461 I
e canFam3.chr35            26343945 252 +  26524999 I

a score=129523.000000
s hg38.chr6_GL000254v2_alt  1488005 10 +   4827813 TAAATTTTAA
s panTro5.chr6             30357432 10 + 175400573 TAAATTTTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30591775 10 + 173848474 TAAATTTTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     298864 10 +   2037526 TAAATTTTAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74965005 10 + 122973662 TAAATTTTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30843827 10 + 172585720 TAAATTTTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30133314 10 - 170955103 TAAATTTTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     382537 10 +   1495729 TAAATTTTAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     484255 10 -    863181 TAAATTTTAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29632684 10 -  71996105 TAAATTTTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     352620 10 -    735854 TAAATTTTAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     271196 10 -   1829203 TAAATTTTAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30469920 10 + 171630274 TAAATTTTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           277725 10 +    515838 TAAATCTTAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     906996 10 -   1771730 TAAATTTTAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      89610 10 -    486031 TACATTTTAA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           316942 10 +  18854210 TAAACTTTAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26344197 10 +  26524999 TAAATTTTAA
i canFam3.chr35            I 252 C 0
e micMur3.chr6               333795 29247 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     166326 5901 -   1411461 I

a score=364935.000000
s hg38.chr6_GL000254v2_alt  1488015 25 +   4827813 AC--TGCCAGATGATAGGACTGTGGCT
s panTro5.chr6             30357442 25 + 175400573 AC--TGCCAGATGATAGGACTGTGGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30591785 25 + 173848474 AC--TGCCAGATGATAGGACTGTGGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     298874 25 +   2037526 AC--TGCCAGATGATAGGACTGTGGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74965015 25 + 122973662 AC--TGCCAGATGATAGGACTGTGGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30843837 25 + 172585720 AC--TGCCAGATGATAGGACTGTGGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30133324 25 - 170955103 AC--TGCCAGATGATAGGACTGTGGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     382547 25 +   1495729 AC--TGTCAGATGATAGGACTGTGGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     484265 25 -    863181 AC--TGCCAGATGATAGGACTGTGGCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29632694 25 -  71996105 AC--TGCCAGATGATAGGACTGTGGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     352630 25 -    735854 AC--TGCCAGATGATAGGACTGTGGCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     271206 25 -   1829203 AC--TGCCAGATGATAGGACTGTGGCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30469930 25 + 171630274 AC--TGCCAGATAATAGGACTGTGGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           277735 25 +    515838 AC--TGCCAGATAATAGGACTGTGGCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     907006 25 -   1771730 AC--TGCCAGATAATAGGACTGTGGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      89620 25 -    486031 AC--TGCCAGATAATAGGACTGTGGCT
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               363042 25 + 123392446 AC--TGCCAGATGACAGGACTGTGGCT
i micMur3.chr6             I 29247 I 883
s otoGar3.GL873550           316952 25 +  18854210 AC--TTCCAGATGGTAGGACTGTGGCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26344207 27 +  26524999 ACTATACCAAGAGGTAAGACTATGGCT
i canFam3.chr35            C 0 C 0
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     166326 5901 -   1411461 I

a score=1736339.000000
s hg38.chr6_GL000254v2_alt  1488040 159 +   4827813 TTTTGAACTGGACCTT---AATAGGCCTGACTTTGACAGGCAGAAAAATAAAGCACTCCTGACAGAGAGAAGTAAA----AGGCCATGAGGAGGTGTGGCTGCACGG-GTGTGTTTGGGAAGCAGAGAGCAATATTGTGTGCTGGTGAAGAGAGTTCAGAGTGAGCA
s panTro5.chr6             30357467 159 + 175400573 TTTTGAACTGGACCTT---AATAGGCCTGACTTTGACAGGCAGAGAAATAAAGCACTCCTGACAGAGAGAAGTAAA----AGGCCATGAGGAGGTGTGGCTGCACGG-GTGTGTTTGGGAAGCAGAGAGCAATGTTGTGTGCTGGTGAAGAGAGTTCAGAGTGAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30591810 159 + 173848474 TTTTGAACTGGACCTT---AATAGGCCTGACTTTGACAGGCAGAGAAATAAAGCACTCCTGACAGAGAGAAGTAAA----AGGCCATGAGGAGGTGTGGCTGCACGG-GTGTGTTTGGGAAGCAGAGAGCAATGTTGTGTGCTGGTGAAGAGAGTTCAGAGTGAGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     298899 159 +   2037526 TTTTGAACTGGACCTC---AATAGGCCTGACTTTGACAGGCAGAAAAATAAAGCACTCCTGACAGAGAGAAGTAAA----AGGCCATGAGGAGGTGTGGCTGCACGG-GTGTGTTTGGGAAGCAGAGAGCAATGTTGTGTGCTGGTGAAGAGAGTTCAGAGTGAGCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74965040 163 + 122973662 TTTTGAACTGGACCTT---AATAGGCCTGACTTTGACAGGCAGAAAAATAAAGCATTCCTGACAGACAGAAGTAAAAGATAGGCTATGAGGAGGTGTGGCTGCACGG-GTGTGTTCGGGAAGCAGAGAGCAATGTTGTGTGCTGGTGAAGAGAGTTCAGAGCGAGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30843862 163 + 172585720 TTTTGAACTGGACCTT---GATAGGCCTGACTTTGGCAGGCAGAAAAAGAAAGCATTCCTGACAGAGGGAAGTAAAAGATAGGCCATGAGGAGGTGTGGCTGAACGG-GTGTGTTCAGGAAGCAGAAAGCAATGTTGTGGGCTGGTGAAGAGAGTTGAGAGCAAGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30133349 163 - 170955103 TTTTGAACTGGACCTT---GATAGGCCTGACTTTGGCAGGCAGAAAAAGAAAGCATTCCTGACAGAGGGAAGTAAAAGATAGGCCATGAGGAGGTGTGGCTGAACGG-GTGTGTTCAGGAAGCAGAAAGCAATGTTGTGGGCTGGTGAAGAGAGTTGAGAGCAAGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     382572 163 +   1495729 TTTTGAACTGGACCTT---GATAGGCCTGACTTTGGCAGGCAGAAAAAGAAAGCATTCCTGACAGAGGGAAGTAAAAGATAGGCCATGAGGAGGTGTGGCTGAACGG-GTGTGTTCAGGAAGCAGAAAGCAATGTTGTGGGCTGGTGAAGAGAGTTGAGAGCAAGCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     484290 163 -    863181 Ttttgaactggacctt---aataggcctgagtttggcaggcagaaaaataaagcattcctgacagagggaagtaaaagataggccatgaggaggtgtggctgcacgg-gtgtgttcaggaagcagaaagcaatgttgtgggctggtgaagagagttgagagcaagca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29632719 163 -  71996105 TTTTGAACTGGACCTT---GATAGGCCTGACTTTGGCAGGCAGAAAAATAAAGCATTCCTGACAAAGGGAAGTAAAAGATAGGCCATGAGGAGGTGTGGCTGCACGG-GTGTGTTCAGGAAGCAGAAAGCAATGTTGTGGGCTGGTGAAGAGAGTTGAGAGCAAGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     352655 163 -    735854 Ttttgaactggacctt---gataggcctgagtttggcaggcagaaaaataaagcattcctgacagagggaagtaaaagataggccatgaggaggtgtggctgcacgg-gtgtgttcaggaagcagaaagcaatgttgtgggctggtgaagagagttgagagcaagca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     271231 163 -   1829203 TTTCGAACTGGACCTT---AATAGGCCTGAGTTTGGCAGGCAGAAAAATAAAGCATTCCTGACAGAGGGAAGTAAAAGATAGGCCATGAGGAGGTGTGGCTGCGCGG-CTGTGTTCAGGAAGCAGAAAGCAATGTTGTGGGCTGGTGAAGTGAGTTGAGAGCAAGCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30469955 158 + 171630274 TTTTGAGCTGGACCTT---AACAGATCTGAATTTGACAGGCAGAAACATaaagcttt-ctggcagagggaagtaaa----aggccatgaggaggcgtggctgcacgc-gtgtgttcaggaagcggaatgcaatgttgtgtgctgccgaagagagcacggagggagaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           277760 158 +    515838 Ttttgaactggacctt---aacaggtctgaatttgacaggcagaaacataaagcatt-ctggcagagggaagtaaa----aggccatgaggaggtgtggccgtacac-atgtgttcaggaagcagaaagcaatgttgtgtgctggtgaagagggcaaggagggagaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     907031 158 -   1771730 Ttttgaactggacctt---aacaggtctgaatttgacaggcagaaacataaagcatt-ctggcagagggaagtaaa----aggccatgaggaggtgtggctgcacgc-atgtgttcaggaagcggaaagcaatgttgtgtgctggtgaagagagcaaagagggagaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      89645 162 -    486031 TCTTGAACTGGACCTT---AACAGGTCTGAATTTGACAGGCAGAAACATaaagcatt-ctggcagagggaagtaaaagacaggccatgaggaggtgtggctgcacgc-atgtgttcaggaagcagaaagcaatgctgtgtgctggtgaagagagcgaggagggagaa
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           316977 156 +  18854210 TTTTGAACTGGACCTT---GACAAGCCTGATTCTGACAGGCAGAA----AGAATATTCCTGGCAGGGAGAAGCAAGAGATAAGCCATAAGGAGG-GTGGCTGCACAG-GTGTGTTCAGGAAACTGAAA-CAACCCTGTGAGCTGGTGAAGAGAGTCTGGAG-GAGCA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26344234 167 +  26524999 TCTCGGCCTGGATCTTGTGAATCGACCTGATTCTGGTAGGCAGAAACAAGTAGCATTCTTGGCAGAGGGAAGTAGGCCATAAGGCTTGAGGGGATGTGGCCACATGGAGTGTGTTCAGGAAGCTACATGTAATTCTTTTGGTTAGTGGGGAGCCTGAGGGGCAGTGG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               363067 883 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            27938 523 +     53444 I
e proCoq1.NW_012149775v1     166326 5901 -   1411461 I

a score=316131.000000
s hg38.chr6_GL000254v2_alt  1488199 31 +   4827813 GAGAGAGAATCCCGGACAATGTCAGTTGGGG
s panTro5.chr6             30357626 31 + 175400573 GAGAGAGAATCCCAGACAATGTCAGTTGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30591969 31 + 173848474 GAGAGAGAATCCCAGACAATGTCAGTTGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     299058 31 +   2037526 GAGAGAGAATCCCAGACAATGTCAGTTGGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74965203 31 + 122973662 GAGACAGAATCCCGGACAACGTCAATTGGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30844025 31 + 172585720 GAGAGAGAATTCCGGACAATGTCAACTGGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30133512 31 - 170955103 GAGAGAGAATCCCGGACAATGTCAACTGGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     382735 31 +   1495729 GAGAGAGAATCCCGGACAATGTCAACTGGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     484453 31 -    863181 gagagAGAATCCTGGACAATATCAACTGGGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29632882 31 -  71996105 GAGAGAGAATCCCGGACAATATCAACTGGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     352818 31 -    735854 gagagagaatcccagacaatatcaactgggg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     271394 31 -   1829203 GAGAGAGAATCCCGGACAATGTCAACTGGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30470113 31 + 171630274 gagacagaatcccggacaatgtccactggcg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           277918 31 +    515838 gagagagaatcccggacagtgtccactgggg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     907189 31 -   1771730 gagagagaatcccagacaatgtccactgggg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      89807 31 -    486031 gagagagaatccgggacaatgtccactcggg
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           317133 28 +  18854210 CAG--AGAACCCTGGA-AATATAAATTGGGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26344401 28 +  26524999 GGGGCAGCACTGGGGA---TGGAGATCGGGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            28461 29 +     53444 GGGAGAGGGCGCTGAA--ATGGAAGTTAGGG
i dasNov3.JH567297         I 523 C 0
e micMur3.chr6               363067 883 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     166326 5901 -   1411461 I

a score=651737.000000
s hg38.chr6_GL000254v2_alt  1488230 60 +   4827813 CTGGGTTCTGGGGCACCTTGGATGCTGGGTGAAGGAGTTTGGGCTTATCTTTGTTGCTGA-
s panTro5.chr6             30357657 60 + 175400573 CTGGGTCCTGGGGCACCTTGGATGCTGGGTGAAGGAGTTTGGGCTTATCTTTGTTGCTGA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30592000 60 + 173848474 CTGGGTCCTGGGGCACCTTGGATGCTGGGTGAAGGAGTTTGGGCTTATCTTTGTTGCTGA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     299089 60 +   2037526 CTGGGTCCTGGGGCACCTTGGATGCTGGGTGGAGGAGTTTGGGCTTATCTTTGTTGCTGA-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74965234 60 + 122973662 CTGGGTCCTGGGGCACCTTGGATGCGGGGTGAAGGAGTTTGGGCTTATCTTTGTTGCTGA-
i nomLeu3.chr1a            C 0 M 100
s rheMac8.chr4             30844056 60 + 172585720 CTGGGTCCTAGGGCACCTTGGATGCTGGGTAAAGGAGTTTGGGCTTATCTTTGTTGCTGA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30133543 60 - 170955103 CTGGGTCCTAGGGCACCTTGGATGCTGGGTAAAGGAGTTTGGGCTTATCTTTGTTGCTGA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     382766 60 +   1495729 CTGGGTCCTAGGGCACCTTGGATGCTGGGTAAAGGAGTTTGGGCTTATCTTTGTTGCTGA-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     484484 60 -    863181 CTGGGTCCTGGGGCACCTTGGATGCTGGGTAAAGGAGTTTGGGCTTATCCTTGTTGCTGA-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29632913 60 -  71996105 CTGGGTCCTGGGGCACCTTGGATGCTGGGTGAAGGAGTTTGGGCTTATCTTTGTTGCTGA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     352849 60 -    735854 ctgggtcctggggcaccttggatgctgggtgaaggagtttgggcttatcgttgttgctga-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     271425 60 -   1829203 CTGGGTCCTGGGGCACCTTAGATGCTGGGTGAAGGAGTTTGGGCTTATCTTTGTTGCTGA-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30470144 59 + 171630274 ctgggtcaca-ggtgccttggatgctgggtgaaggagtttgggtttatctttgttaatga-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           277949 60 +    515838 ctgggtcccagggtgccttggatgctgggtgagggagtttgggcttatctttgttgatga-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     907220 60 -   1771730 ctgggtcacagggtaccttggatgctgagtgaagaagtttgggcttatctttgttgatga-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      89838 60 -    486031 ctgggtcacagggtgccttggatgctgggtgaaggagtttgggcttatctttgttgatga-
i aotNan1.NW_018496901v1   C 0 C 0
s canFam3.chr35            26344429 59 +  26524999 TCAGATCCCT-GACAGCTTGGACTCAGAGTTAAGGAGTTTGGGCTTATTTTGAGTAATGA-
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            28490 44 +     53444 TTAGGTCACAAGCAGCCTTGGATGCTGAGTTAGGG-----------------GTTAATGGA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               363067 883 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     166326 5901 -   1411461 I
e otoGar3.GL873550           317161  0 +  18854210 C

a score=328901.000000
s hg38.chr6_GL000254v2_alt  1488290 35 +   4827813 GAAGCCATTTTGAAGGGAGGACTAACATCAACAAA
s panTro5.chr6             30357717 35 + 175400573 GAAGCCATTTTGAAGGGAGGACTAACATCAACAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30592060 35 + 173848474 GAAGCCATTTTGAAGGGAGGACTAACATCAACAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     299149 35 +   2037526 GAAGCCATTTTGAAGGGAGGACTAACATCAACAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30844116 34 + 172585720 GAAGCCATTTTGAA-GGAGGAGTAACATCAACAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30133603 34 - 170955103 GAAGCCATTTTGAA-GGAGGAGTAACATCAACAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     382826 34 +   1495729 GAAGCCATTTTGAA-GGAGGGGTAACATCAACAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     484544 34 -    863181 GAAGCCATTTTGAA-GGAGGAGTAACATCAACAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29632973 34 -  71996105 GAAGCCATTTTGAA-AGAAGAATAACATCATCAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     352909 34 -    735854 gaagccattttgaa-ggaggagtaacatCAACAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     271485 34 -   1829203 GAAGCCATTTTGAA-GGAGGAGTAACATCAACAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30470203 35 + 171630274 gaagccattttgaagggaggagtaacatCAACAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           278009 35 +    515838 gaagccattttgaagggaggagtaacatCAACGAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     907280 35 -   1771730 gaagccattttgaagggacgagtaacatCAACAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      89898 35 -    486031 gaagccattttgaagggaggagtaacatCAACAAA
i aotNan1.NW_018496901v1   C 0 C 0
s canFam3.chr35            26344488 35 +  26524999 GAAGTCATCTTGAAGAAAGGAATAACACAGGTCAA
i canFam3.chr35            C 0 I 1
s dasNov3.JH567297            28534 34 +     53444 GGAGCCATTTTGATGAGAGGAG-AGGATGATAAAA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               363067 883 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     166326 5901 -   1411461 I
e otoGar3.GL873550           317161  0 +  18854210 C
e nomLeu3.chr1a            74965294 100 + 122973662 M

a score=79983.000000
s hg38.chr6_GL000254v2_alt  1488325 6 +   4827813 GGTGAA
s panTro5.chr6             30357752 6 + 175400573 GGTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30592095 6 + 173848474 GGTGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     299184 6 +   2037526 GGTGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30844150 6 + 172585720 GGTGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30133637 6 - 170955103 GGTGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     382860 6 +   1495729 GGTGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     484578 6 -    863181 GGTGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29633007 6 -  71996105 GGTGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     352943 6 -    735854 GGTGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     271519 6 -   1829203 GGTGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30470238 6 + 171630274 GGTGAA
i calJac3.chr4             C 0 I 309
s saiBol1.JH378341           278044 6 +    515838 GGTGAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     907315 6 -   1771730 GGTGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      89933 6 -    486031 GGTGAA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     172227 6 -   1411461 GGTGAA
i proCoq1.NW_012149775v1   I 5901 C 0
s canFam3.chr35            26344524 6 +  26524999 GATGAA
i canFam3.chr35            I 1 C 0
s dasNov3.JH567297            28568 6 +     53444 GAGGAA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               363067 883 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e otoGar3.GL873550           317161 0 +  18854210 C
e nomLeu3.chr1a            74965294 100 + 122973662 M

a score=413430.000000
s hg38.chr6_GL000254v2_alt  1488331 40 +   4827813 ATGTGAC-----------------------------------AGATTTCAAGCTGAATGGCAGGCAGAATGGCAG
s panTro5.chr6             30357758 40 + 175400573 ATGTGAC-----------------------------------AGATTTCAAGCTGAATGGCAGGCAGAATGGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30592101 40 + 173848474 ATGTGAC-----------------------------------AGATTTCAAGCTGAATGGCAGGCAGAATGGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     299190 40 +   2037526 ATGTGAC-----------------------------------AGATTTCAAGCTGAATGGCAGGCAGAATGGCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30844156 40 + 172585720 ATATGAC-----------------------------------AGATTTCAAGCTGAATGGCAGGCAGAATGGCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30133643 40 - 170955103 ATATGAC-----------------------------------AGATTTCAAGCTGAATGGCAGGCAGAATGGCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     382866 40 +   1495729 ATATGAC-----------------------------------AGATTTCAAGCTGAATGGCAGGCAGAATGGCAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     484584 40 -    863181 ATATGAC-----------------------------------AGATTTCAAGCTGAATGGCAGGCAGAATGGCAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29633013 40 -  71996105 ATATGAC-----------------------------------AGATTTCAAGCTGAATGGCAGGCAGAATGGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     352949 40 -    735854 ATATGAC-----------------------------------AGATTTCAAGCTGAATGGCAGGCAGAATGGCAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     271525 40 -   1829203 ATATGAC-----------------------------------AGATTTCAAGCTGAATGGCAGGCAGAATGGCAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30470553 40 + 171630274 ATATGAC-----------------------------------AGATTTTAAGCTGAATGTCAGGCAGAATGGCAG
i calJac3.chr4             I 309 C 0
s saiBol1.JH378341           278050 75 +    515838 ATATGACCTTTTAAGGTCATATTTATGAGATTTTAAAATATGAGATTTTAAGCTGAATGGCAGGCACAATGGCAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     907321 40 -   1771730 GTATGAC-----------------------------------AGATTTTAAGCTGAATGGCAGGCAGAATGGCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      89939 40 -    486031 ATATGAC-----------------------------------AGATTTTAAGCTGAATGGCAGGCACAATGGCAG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     172233 40 -   1411461 AGATGAC-----------------------------------CGATTTCGAGCTGAATGGCAGGCACAGTGGCAG
i proCoq1.NW_012149775v1   C 0 I 180
s canFam3.chr35            26344530 40 +  26524999 ATATGGC---------------------------------TGAGATGTCAAGTGTTATGACAGCAGGTGTTGA--
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            28574 41 +     53444 ----------------------------------ATAAACTGAGCACTCAAGCTGGATGGCAGGCGGGATGGTGG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               363067 883 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e otoGar3.GL873550           317161  0 +  18854210 C
e nomLeu3.chr1a            74965294 100 + 122973662 M

a score=1729629.000000
s hg38.chr6_GL000254v2_alt  1488371 182 +   4827813 TCCCAATGTCAGAAACATGAAGGTCAAGAGGAGTGGACTGCAGAAGAGCTTGGGGAACTGGGCAGCATG--TTTGATTCTACCATATTGATTTTGAGCTGCCAACAGGGCAGTAGGCAGCACTTAGCTCTCACTTGGAAGCATGAGATGGATTGCTAGGAAAAAAGATTTGGTTTTGGAATTCT---
s panTro5.chr6             30357798 182 + 175400573 TCCCAATGTCAGAAACATGAAGGTCAAGAGGAGTGGACTGCAGAAGAGCTTGGGGAACTGGGCAGCATG--TTTGATTCTACCATATTGATTTTGAGCTGCCAACAGGGCAGTAGGCAGCACTTAGCTCTCACTTGGAAGCATGAGATGGATTGCTAGGAAAAAAGATTTGGTTTTGGAATTCT---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30592141 182 + 173848474 TCCCAATGTCAGAAACATGAAGGTCAAGAGGAGTGGACTGCAGAAGAGCTTGGGGAACTGGGCAGCATG--TTTGATTCTACCATATTGATTTTGAGCTGCCAACAGGGCAGTAGGCAGCACTTAGCTCTCACTTGGAAGCATGAGATGGATTGCTAGGAAAAAAGATTTGGTTTTGGAATTCT---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     299230 181 +   2037526 TCCCAATGTCAGAAACATGAAGGTCAAGAGGAGTGGACTGCAGAAGAGCTTGGGGAACTGGGCAGCATG--TTTGATTCTACCATATTGATTTTGAGCTGCCAACAGGGCAGTAGGCAGCACTTAGCTCTCACTTGGAAGCATGAGATGGATTGCTAGGAAAAAAGATTT-GTTTTGGAATTCT---
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30844196 182 + 172585720 TCCCAGTGTCAGAAACACTAAGGTCAAGAGGAGTGGACTGCAGAAGAGGGTGGGGAACTGGGCAGCATG--TTTGAGTCTACCATATTGATTCTGAGCTGCCAACAGGGCAGTAGGCAGTACTTAGCTCTCACTTGGAAGCATGAGATGGACTGCTAGGAAGAAATATTTGGTTTTGGAATTCT---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30133683 182 - 170955103 TCCCAGTGTCAGAAACACTAAGGTCAAGAGGAGTGGACTGCAGAAGAGGGTGGGGAACTGGGCAGCATG--TTTGAGTCTACCATATTGATTCTGAGCTGCCAACAGGGCAGTAGGAAGTACTTAGCTCTCACTTGGAAGCCTGAGATGGACTGCTAGGAAGAAATATTTGGTTTTGGAATTCT---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     382906 182 +   1495729 TCCCAGTGTCAGAAACACTAAGGTCAAGAGGAGTGGACTGCAGAAGAGGGTGGGGAACTGGGCAGCATG--TTTGAGTCTACCATATTGATTCTGAGCTGCCAACAGGGCAGTAGGCAGTACTTAGCTCTCACTTGGAAGCCTGAGATGGACTGCTAGGAAGAAATATTTGGTTTTGGAATTCT---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     484624 182 -    863181 TCCCAATGTCAGAAACACTAAGGTCAAGAGGCGTGGACAGCAGAAGAGGGTGGGGAACTGGGCAGCATG--TTTGAATCTACCATATTGATTCTGAGCTGCCAACAGGGCAGTAGGCAGTACTTAGCTCTCACTTGGAAGCATGAGATGGACTGCTAGGAAGAAATATTTGGTTTTGGAATTCT---
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29633053 182 -  71996105 TCCCAGTGTCAGAAACACTAAGGTCAAGAGGAGTGGACTGCAGAAGAGGGTGGGGAACTGGGCAGCATG--TTTGAATCTACCGTATTGATTCTGAGCTGCCAACAGGGCAGTAGGCAGTACTTAGCTCTCACTTGAAAGCATGAGATGGACTGCTAGGAAGAAATATTTGGTTTTGGAATTGT---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     352989 182 -    735854 TCCCAGTGTCAGAAACACTAAGGTCAAGAGGAGTGGACTGCAGAAGAGGGTGGGGAACTGGGCAGCGTG--TTTGATTCTACCATATTGATTCTGAGCTGCCAACAGGGCAGTAGGCAGTACTTAGCTCTCACTTGGAAGCATGAGATGGACTGCTAGGAAGAAATATTTGGTTTTGGAATTCT---
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     271565 182 -   1829203 TCCCAATGTCAGAAACACTAAGGTCAAGAGGAGTGGACTGCAGAAGAGGGTGGGGAACTGGGCAGCATG--TTTGAGTTTACCATATTGATTCTGAGCTGCCAGTAGGGCAGTAGGCAGTACTTAGCTCTCACTTGGAAGCATGACATGGACTGCTAGGAAGAAATATTTGGTTTTGGAATTCT---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30470593 182 + 171630274 TTCCAATGCCAGAAATATGAAGGTCAGAAAGAGTGGACTGCAGAAGAGGGTGGGGAAGGGGGCAGCATG--TTTGATTTGACAGCATCGATTCTGAGCTGCCAACAGGGCAGTAGGCAATACTTAGCTCTCAGTTGGAAGCATGAGATGGACTGCTGGGAAGAAAGATTTGGTTGTGGAATTAT---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           278125 182 +    515838 TTCCAATGCCAGAAATATGAAGGTCAAGAGGGGTGGACTGCAGAAGAGGGTGGGAAAGGGGGCAGCATG--TTTGATTTGACAGTATCGATTTTGAGCTGCCAACAGGGCAGTAGGCAATACTTAGCTCTCAGTTGGAAGCATGAGACGGACTGCTAGGAAGAAAGTTTTGGTTTTGGAATTAT---
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     907361 182 -   1771730 TTCCAATGCCAGAAATATGAAGGTGAAGAGGAGTGGACTGCAGAGGAGAGTGGGGAAGGGGGCAGCATG--TTTGATTTGACAGTATCGATTTTGAGCTGCCAACAGGGCAGTAGGCAATACTTAGCTCTCAGTTGGATGCATGAGATGGACTGCTAGGAAGAGAGATTTGGTTTTGGAATGAT---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      89979 182 -    486031 CTCCAGTGCCGGAAATATGAAGGTCAAGAGGAGTGGACTGCAGAAGAGGGTGGGGAAGGGGTCAGCATG--TTTGATTTGACAGTATCGATTTTGAGCTGCCAACAGGGCAGTAGGCAATACTTAGCTCTCAGTTGGAAGCATGAGATGGACTGCTGGGAAGAAAGATTTGGTTTTGGAATTAT---
i aotNan1.NW_018496901v1   C 0 C 0
s canFam3.chr35            26344570 179 +  26524999 GTCCAATGACAGAAATGTGGAGGTTGAGAGCAGTGGACTGCACAAAAGTAAGG-----TGGACAGGATGATGTTGGCCTTTCCATATTGATTTTGAGCTGCAGCTAGGGCAATGGGAGAGAATTCGCTCTTGGTTGGAAATATGGGATTGATTGTTAGGGACAAATACCTGGTTTGGGAATTAG---
i canFam3.chr35            C 0 I 3
s dasNov3.JH567297            28615 163 +     53444 GTCCAGGGAGAGAAACACGGAGATGAGGAGGAGGGGGCTGCAGAAGA----GGGGGAGGGGGTAGC-----CTTTATTTCCTTAGATTGATTTTGAGCTGCCGGTAGGCCAAGAGGAGCTCTGTAATTCTCAGCTGGAAATGCAGGATTGGCTGCTAGAAA---------------GGAATTATGAT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               363067 883 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     172273 180 -   1411461 I
e otoGar3.GL873550           317161   0 +  18854210 C
e nomLeu3.chr1a            74965294 100 + 122973662 M

a score=11849.000000
s hg38.chr6_GL000254v2_alt  1488553 1 +   4827813 A
s panTro5.chr6             30357980 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30592323 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     299411 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74965395 1 + 122973662 A
i nomLeu3.chr1a            M 100 C 0
s rheMac8.chr4             30844378 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30133865 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     383088 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     484806 1 -    863181 A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29633235 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     353171 1 -    735854 A
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     271747 1 -   1829203 A
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30470775 1 + 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           278307 1 +    515838 A
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     907543 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      90161 1 -    486031 A
i aotNan1.NW_018496901v1   C 0 C 0
s canFam3.chr35            26344752 1 +  26524999 G
i canFam3.chr35            I 3 C 0
s dasNov3.JH567297            28778 1 +     53444 A
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               363067 883 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     172273 180 -   1411461 I
e otoGar3.GL873550           317161 0 +  18854210 C

a score=793092.000000
s hg38.chr6_GL000254v2_alt  1488554 65 +   4827813 AGATCTGAAGGCTCCAGAAAGGAAAGCTAAGGACATAGTCT-GAGATAGAAAAGGGTT----------GAGGAGCC
s panTro5.chr6             30357981 65 + 175400573 AGATCTGAAGGCTCCAGAAAGGAAAGCTAAGGACATAGTCT-GAGGTAGAAAAGGGTT----------GAGAAGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30592324 65 + 173848474 AGATCTGAAGGCTCCAGAAAGGAAAGCTAAGGACATAGTCT-GAGGTAGAAAAGGGTT----------GAGGAGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     299412 65 +   2037526 AGATCTGAAGGCTCCAGAAAGGAAAGCTAAGGACATAGTCT-GAGATAGAAAAGGGTT----------GAGGAGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74965396 64 + 122973662 AGATCTGAAGCCTCCCGAAAGGAAAGCTAAGGGCATAGT-T-GAGATAAAAAAGGGTT----------GAGGAGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30844379 75 + 172585720 AGATCTGAAGCCTTCAGAAAGGAAAGCTAAGGACGTAGTTT-GAGATAGAAAAGGGTTAAAAAGATAAAAAGAGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30133866 75 - 170955103 AGATCTGAAGCCTTCAGAAAGGAAAGCTAAGGACGTAGTTT-GAGATAGAAAAGGGTTAAAAAGATAAAAAGAGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     383089 75 +   1495729 AGATCTGAAGCCTTCAGAAAGGAAAGCTAAGGACGTAGTTT-GAGATAGAAAAGGGTTAAAAAGATAAAAAGAGCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     484807 65 -    863181 AGATCTGAAGCCTTCAGAAAGGAAAGCTAAGGACGTAGTTT-GAGATAGAAAAGGGTT----------GAAGAGCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29633236 65 -  71996105 AGATCTGAAGCCTTCAGAAAGGAAAGCTAAGGACGTAGTTT-GAGATAGAAAAGGGTT----------GAAGAGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     353172 75 -    735854 AGATCTGAAGCCTTCAGAAAGGAAAGCTAAGGACGTAGTTT-GAGATAGAAAAGGGTTAAAAAGATAAAAAGAGCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     271748 65 -   1829203 AGATCTGAAGCCTTCAGAAAGGAAAGCTAAGGACGTAGTTT-GAGATAGAAAAGGGTT----------GAAGAGCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30470776 65 + 171630274 AGATCTGAAGCCTCCAGAAAGGAATGCTAAGGACATAGTTT-GAGATACAAAAGGGTT----------GAGGAGCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           278308 65 +    515838 AgatctgaagcctccagaaaagaatgctaaggacaTAGTTT-GAGATAGAAAAGGGTT----------GAGGAGCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     907544 65 -   1771730 AgatctgaagcctccagaaaagaatgctaaggacaTAGTTT-GAGATAGAAAAGGGTT----------GAGGAGCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      90162 65 -    486031 AGATCTGAAGCCTCCAGAAAAGAACGCTAAGGACATAGTTT-GAGATAGAAAAGGGTT----------GAGGAGCC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     172453 64 -   1411461 AGATCTGAAGCCTCCAGAATGGAAAGCTAAGGGTGTAGTCA-GAGACAG-AAAGGGTT----------GAGGAGCC
i proCoq1.NW_012149775v1   I 180 I 99
s canFam3.chr35            26344753 66 +  26524999 ATATCTGAAGCCTTCAGAATGGAAAATTAAGGGCAGAGTTTGGAGACAGAGAAGGGTT----------AAATAAGC
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            28779 64 +     53444 AACTCTGAAGCCACCAGCATGGAAAACTAAGGGCACA-TGT-GAAGTAAAAGAGGGTT----------AAGAAAAC
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               363067 883 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e otoGar3.GL873550           317161  0 +  18854210 C

a score=1118881.000000
s hg38.chr6_GL000254v2_alt  1488619 109 +   4827813 AACTTC---AAGG----CTCCTTTTTACAGAAAAAAATGAAGAGGCAAAGAAGCAGTGGCAGAAGGCACAGGTCTAGGA--AGGATGGG----GTGG----------------------------------------------AGAGGAGGTGC---AG--AAAGGCAC-CTGC
s panTro5.chr6             30358046 109 + 175400573 AACTTC---AAGG----CTCCTTTTTACAGAAAAAAATGAAGAGGCAAAGAAGCAGTGGCAGAAGGCACAGGTCTAGGA--AGGATGGG----GTGG----------------------------------------------AGAGGAGGTGC---AG--AAAGGCAC-CTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30592389 109 + 173848474 AACTTC---AAGG----CTCCTTTTTACAGAAAAAAATGAAGAGGCAAAGAAGCAGTGGCAGAAGGCACAGGTCTAGGA--AGGATGGG----GTGG----------------------------------------------AGAGGAGGTGC---AG--AAAGGCAC-CTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     299477 109 +   2037526 AACTTC---AAGG----CTCCTTTTTACAGAAAAAAATGAAGAGGCAAAGAAGCAGTGGCAGAAGGCACAGGTCTAGGA--AGGATGGG----GTGG----------------------------------------------AGAGGAGGTGC---AG--AAAGGCAC-CTGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74965460 108 + 122973662 AACTTC---AAGG----CTCCTTTTTACAG-GAAAAATGAAGAGGCAAAGAAGCAGTGGCAGAAGGCACAGGTGTAGGA--AGGATGGG----GTGG----------------------------------------------AGAGGAGGTGC---AG--AAAGGCAC-CTGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30844454 108 + 172585720 AACTTC---AAGG----CTCCTTTTTACAG-GAAAAATGAAGACGCAAAGAAGCAGTGGCAAAAGGCACAGATCTAGGA--AGGATGGG----GTGG----------------------------------------------AGAGGAGGTGC---AG--AAAGGCAC-CTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30133941 108 - 170955103 AACTTC---AAGG----CTCCTTTTTACAG-GAAAAATGAAGAGGCAAAGAAGCAGTGGCAAAAGGCACAGATCTAGGA--AGGATGGG----GTGG----------------------------------------------AGAGGAGGTGC---AG--AAAGGCAC-CTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     383164 108 +   1495729 AACTTC---AAGG----CTCCTTTTTACAG-GAAAAATGAAGAGGCAAAGAAGCAGTGGCAAAAGGCACAGATCTAGGA--AGGATGGG----GTGG----------------------------------------------AGAGGAGGTGC---AG--AAAGGCAC-CTGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     484872 108 -    863181 AATTTC---AAGG----CTCCTTTTTACAG-GAAAAATGAAGACGCAAAGAAGCAGTGGCAAAAGGCACAGATCTAGGA--AGGATGGG----GTGG----------------------------------------------AGAGGAGGTGC---AG--AAAGGCAC-CTGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29633301 108 -  71996105 AACTTC---AAGG----CTCCTTTTCACAG-GAAAAATGAAGACGCAAAGAAGCAGTGGCAAAAGGCACAGATCTAGGA--AGGATGGG----GTGG----------------------------------------------AGAGGAGGTGC---AG--AAAGGCAC-CTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     353247 108 -    735854 AACTTC---AAGG----CTCCTTTTTACAG-GAAAAATGAAGAGGCAAAGAAGCAGTGGCAAAAGAAACAGATCTAGGA--AGGATGGG----GTGG----------------------------------------------AGAGGAGGTGC---AG--AAAGGCAC-CTGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     271813 108 -   1829203 AACTTC---AAGG----CTCCTTTTTACAG-GAAAAATGAAGAGGCAAAGAAGCAGTGGCAAAAAGCACAGATCTAGGA--AGGATGGG----GTGG----------------------------------------------AGAGGAGGTGC---AG--AAAGACAC-CTGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30470841 109 + 171630274 AATTTC---AAGG----CTTCTTTTTACAG-GAAAAATGAAGAGGCGAAGAAGCAGTGATAGAAGGCACAGGTCTAGGA--AGGATGGG---GGTGG----------------------------------------------AGAGGTGGTCC---AA--AAAGGCAC-CTGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           278373 109 +    515838 AATTTC---AAGG----CCTCTTTTTACAG-GAAAAATGAAGAGGCGAAGAAGCAGTGGCAGAAGGCACAGGTCTAGGA--AGGATGGG---GGTGG----------------------------------------------AGAGGTGGTCC---AA--AAAGGCGC-CTGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     907609 109 -   1771730 AATTTC---CAGG----CGTCTTTTTACAG-GAAAAGTGAAGAGGCGAAGAAGCAGTGGCAGAAGGCACAGGTCTAGGA--AGGATGGG---GGTGG----------------------------------------------AGAGGTGGTCC---AA--AAAGGCAC-CTGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      90227 109 -    486031 AATTTC---AAGG----CTTCTTTTTACTG-GAAAAATGAAGAGGCGAAGAAGCAGTGGCAGAAGGCACAGGTCTAGGA--AGGATGGG---CGTGG----------------------------------------------AGAGGTGGTCC---AA--AAAGGCAC-CTGC
i aotNan1.NW_018496901v1   C 0 C 0
s canFam3.chr35            26344819 165 +  26524999 AACCCT---AAGAAGGCTTCCTTCGTGGAGGGAAAAGTGAAGAAGCAGAGGGGCAGTGTGAGAGGCACCAGGACAAGGA--AGGATGGGTGGGGTGGGAAGAACGGAGTGGGGGTAGGATTTGGGGACAG-TTACCTCAAGGAGGAGGAAGCCC---AAGTAAAGGCCCTCTGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            28843 142 +     53444 AGCCCTGGAAAGG----CTCCCACCAACTG-GAAAAGTGAAGATGCAGAGGAGCAGCAGTGGGAGGACAAGGATGGGGAGCAGGATGTG----GGGG--------------------AACCTGAGGGGAGAATTCAtcaaagaagaggagacctgagaa--gaaggtgc-cacc
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               363067 883 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     172517  99 -   1411461 I
e otoGar3.GL873550           317161   0 +  18854210 C

a score=871450.000000
s hg38.chr6_GL000254v2_alt  1488728 70 +   4827813 GGATTTCATGG------------CTGGAGATCTCAGGTGACTTTGGAGAGAGAGGCTTTAAAGGAGTGATGAGAAACAAGGC
s panTro5.chr6             30358155 70 + 175400573 GGATTTCATGG------------CTGGAGATCTCAGGTGACTTTGGAGAGAGAGGCTTTAAAGGAGTGATGAGAAACAAGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30592498 70 + 173848474 GGATTTCATGG------------CTGGAGATCTCAGGTGACTTTGGAGAGAGAGGCTTTAAAGGAGTGATGAGAAACAAGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     299586 70 +   2037526 GGATTTCATGG------------CTGGAGATCTCAGGTGACTTTGGAGAGAGAAGCTTTAAAGGAGTGACGAGAAACAAGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74965568 70 + 122973662 GGATTTCATGG------------CTGGAGATCCCAGGTGATCTTGGAGAGAGAGGCTTCAAAGGAGTAATGAGAAACAAGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30844562 70 + 172585720 GGATTTCATGG------------CTGGAAATCGCAGGTGACCCTGGAGAGAGATGCTTCAAAGGAGTGATGAGAAACAAGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134049 70 - 170955103 GGATTTCATGG------------CTGGAAATCGCAGGTGACCCTGGAGAGAGATGCTTCAAAGGAGTGATGAGAAACAAGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     383272 70 +   1495729 GGATTTCATGG------------CTGGAAATCGCAGGTGACCCTGGAGAGAGATGCTTCAAAGGAGTGATGAGAAACAAGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     484980 70 -    863181 GGATTTCATGA------------CTGGAAATGGCAGGTGACCCTGGAGAGAGATGCTTCAAAGGAGTGATGACAAACAAGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29633409 70 -  71996105 GGATTTCATGG------------CTGGAAATCGCAGGTGACCCTGGAGAGAGATGCTTCAAAGGAGTGATGAGAAACAAGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     353355 70 -    735854 GGATTTCATGG------------CTGGAAATCGCAGGTGACCCTGGAGAGAGATGCTTCAAAGGAGTGATGAGAAACAAGGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     271921 70 -   1829203 GGATTTCATGG------------CTGGAAATCGCAGGTGACCCTGGAGAGAGATGCTTCAAAGGAGTGATGGGAAACAAGGC
i colAng1.NW_012115577v1   C 0 I 18
s calJac3.chr4             30470950 70 + 171630274 AGATTTCGTGG------------CTGGAGATCCCAGGTGACCTTGGAGAGAGATGCTTGAAAGGAGTGATGAGAAACAAGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           278482 70 +    515838 AGATTTCGTGG------------CTGGAGATCCCAGGTGACATTGGAGAGACATGCTTGAAAGGAGTGATGAGAAACAAGGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     907718 70 -   1771730 AGATTTCGTGG------------CTGGAGATCCCAGGTGACCTTGGAGAGAGACGCTTGAAAGGAGTGATGAGAAGCAAGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      90336 70 -    486031 AGATTTCGTGG------------CTGGAGATCCCAGGTGACCTTGGAGAGAGATGCCTGAAAGGAGTGATGAGAAACAAGGC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     172616 70 -   1411461 GGATTTCATGG------------CTGGAGATCGCAGGTGACCGCGGAGAGAGATGTTTCAAAGGAGAGATGAGAAACAAGGC
i proCoq1.NW_012149775v1   I 99 I 248
s canFam3.chr35            26344984 75 +  26524999 GGCCTTCCCAGAGATCTCCCTTCCCAGAGATCTCTGGTGACCTTGGAGGGAGAGGTCTCCAAAGAG-------AAGCAAGCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            28985 67 +     53444 agatttcagta------------ctagagatcacggatgaccttggagaaagaggtttcaaaagactgatgagaaacaa---
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               363067 883 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e otoGar3.GL873550           317161  0 +  18854210 C

a score=926685.000000
s hg38.chr6_GL000254v2_alt  1488798  92 +   4827813 GGCTGGCTGAGGAATGACGACAGTGA--GGAGGT--GAAGACAGCAACACCAAACAACTTGACTG-------TGAGGGCAGC--------AAGTGAGTAGATGCAAGC-------GGT
s panTro5.chr6             30358225  92 + 175400573 GGCTGGCTGAGGAATGACGACAGTGA--GGAGGT--GAAGACAGCAACACCAAACAACTTGACTG-------TGAGGGCAGC--------AAGTGAGTAGATGCAAGG-------GGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30592568  92 + 173848474 GGCTGGCTGAGGAATGACGACAGTGA--GGAGGT--GAAGACAGCAACACCAAACAACTTGACTG-------TGAGGGCAGC--------AAGTGAGTAGATGCAAGG-------GGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     299656  92 +   2037526 GGCTGGCTGAGGAATGACGACAGTGA--GGAGGT--GAAGACAGCAACACCAAACAACTTGACTG-------TGAGGGCAGC--------AAGTGAGTAGATGCAAGG-------GGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74965638  92 + 122973662 GGCTGGCTGAGGAATGACGGCAATGA--GGAGGT--GAAGATAGCCACACCAAACAACTTGACTG-------TGAGGGCAGC--------AAGTGAGTAGATGCAAGG-------GGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30844632  92 + 172585720 GGCTGGCTGAGGAATGACGACAGTGA--GGAGGT--GAAGATAGCAACACCAAACAACTTGACTG-------TGAGGGCAGA--------AAGTGAGTAGATGCAAGG-------GGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134119  92 - 170955103 GGCTGGCTGAGGAATGACGACAGTGA--GGAGGT--GAAGATAGCAGCACCAAACAACTTGACTG-------TGAGGGCAGA--------AAGTGAGTAGATGCAAGG-------GGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     383342  92 +   1495729 GGCTGGCTGAGGAATGACGACAGTGA--GGAGGT--GAAGATAGCAACACCAAACAACTTGACTG-------TGAGGGCAGA--------AAGTGAGTAGATGCAAGG-------GGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485050  92 -    863181 GGCTGGCTGAGGAATGACGACAGTGA--GGAAGT--GAAGATAGCAACACCAAACAACTTGACTG-------TGAGGGCAGA--------AAGTGAGTAGACGCAAGG-------GGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29633479  92 -  71996105 GGCTGGCTGAGGAATGACGACAGTGA--GGAGGT--GAAGATAGCAACACCAAACAACTTGACTG-------TGAGGGCAGA--------AAGTGAGTAGATGCAAGG-------GGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     353425  92 -    735854 GGCTGGCTGAGGAATGACGACAGTGA--GGAAGT--GAAGATAGCAACACCAAACAACTTGACTG-------TGAGGGCAGA--------AAGTGAGTAGACGCAAGG-------GGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     272009  92 -   1829203 GGCTGGCTGAGGAATGACGACAGTGA--GGAGGT--GAAGATAGCAACACCAAACAACTTGACTG-------TGAGGGCAGA--------AAGTGAGTAGATGCAAGG-------GGT
i colAng1.NW_012115577v1   I 18 C 0
s calJac3.chr4             30471020  92 + 171630274 GGCTGGCTGAGGAATGATGGCAGGGA--GGACGT--GAACAGAGCAAGACCAGAAGACTCGACTG-------TGAGGGCAGA--------AAGAGAGTAGATGCAAGG-------GGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           278552  91 +    515838 GGCTGGCTGAGGAATGATGGCAGGGA--GGACGT--GAACAGAGCAAGACCGGAAGACTTGACTG-------TGAGGACAGA--------AAGAGAGTAGATGC-AGG-------GGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     907788  92 -   1771730 GGCTGGCTGCGGAATGATGGCAGGGA--GGAGGT--GAACAGAGCAAGACCAGAAGACTCGACTG-------TGAGGGCAGA--------AAGAGAGTAGATGCAAGG-------GGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      90406  92 -    486031 AGCTGGCTGAGGAATGATGACAGGGA--GGACGT--GAACAGAGCAAGACCAGAAGACTTGACTG-------TGAGGGCAGA--------AAGAGAGTAGATGCAAGG-------GGT
i aotNan1.NW_018496901v1   C 0 C 0
s canFam3.chr35            26345059  95 +  26524999 -CATGGCTGAGCAGTG----CAGGGGCCCGAGGA--GAGGAC-GTGGGGCCCAGAAGGTGGGTTA-------TGAGGGTGGA--------GAAAGAAAAGACTGGGGGAACGCCAGGT
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            29052 105 +     53444 ----gacttaggcatgaagggaaggt--ggggatcagaggacaatgaggaaggccgactcctctgagaagatcgagggcagagacaagagaagggagtagatggaaaa-------ggg
i dasNov3.JH567297         C 0 I 281
e micMur3.chr6               363067 883 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     172686 248 -   1411461 I
e otoGar3.GL873550           317161   0 +  18854210 C

a score=791913.000000
s hg38.chr6_GL000254v2_alt  1488890 80 +   4827813 GAAGGCTGTTTG--TGCTTTTCAGGACATGAACTCTTGTGCTCACACAAACAGTTCCACA-----CCAGCCTGCCACCTTCTTCAGC
s panTro5.chr6             30358317 80 + 175400573 GAAGGCTGTGTG--TGCTTTTCAGGACCTGAACTCTTGTGCTCACACAAACAATTCCACA-----CCAGCCTGCCACCTTCTTCAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30592660 80 + 173848474 GAAGGCTGTGTG--TGCTTTTCAGGACCTGAACTCTTGTGCTCACACAAACAATTCCACA-----CCAGCCTGCCACCTTCTTCAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     299748 80 +   2037526 GAAGGCTGTTTG--TGCTTTTCAGGACCTGAACTCTTGTGCTCACGCAGACAATTCCACA-----CCAGCCTGTCACCTTCTTCAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74965730 85 + 122973662 GAAGGCTGTTTG--TGCTTTTCAGTACCTGAACTCTTGTGCTCACACAAACAATTCCACACCAACCCAGCCTGCCACCTTCTTCAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30844724 85 + 172585720 GGAGGCTATTCG--TGCTTTTCAGGACCTGAACTCTTGTGCTCACACAAACAATTCCACACCAACCCAGCCTGTCACCTTCTTCAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134211 85 - 170955103 GGAGGCTATTCG--TGCTTTTCAGGACCTGAACTCTTGTGCTCACACAAACAATTCCACACCAACCCAGCCTGTCACCTTCTTCAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     383434 85 +   1495729 GGAGGCTATTCG--TGCTTTTCAGGACCTGAACTCTTGTGCTCACACAAACAATTCCACACCAACCCAGCCTGTCACCTTCTTCAGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485142 85 -    863181 GGAGGCTATTCG--TGCTTTTCAGGACCTGAACTCTTGTGCTCACACAAACAATTCCACACCAACCCAGCCTGTCACCTTCTTCAGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29633571 85 -  71996105 GGAGGCTATTCG--CGCTCTTCAGGACCTGAACTCTTGTGCTCACACAAACAATTCCACACCAACCCAGCCTGTCACCTTCTTCAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     353517 85 -    735854 GGAGGCTATTCG--TGCTTTTCAGGACCTGAACTCTTGTGCTCACACAAACAATTCCACACCAACCCAGCCTGTCACCTTCTTCAGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     272101 85 -   1829203 GAAGGATATTTG--TGCTTTTCAGGACCTGAACTCTTGTGCTCACACAAACAATTCCACACCAGCCCAACCTGTCACCTTCTTCAGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30471112 81 + 171630274 GGAGACT----G--TGCTTTTCAGGACCTGACCTCTTGTGCGAACTCAAACAATTCCACAGGCACCCAGCCCGCCACCTTCTTCAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           278643 85 +    515838 GGAGACTGTTGG--TGCTTTTCAGGACCTGGACTCTTGTGCTCACACAAACAATTCCACACCAACCCAGCCTGCCACCTTCTTCAGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     907880 85 -   1771730 GGAGACTGTTCG--TGCTTTTCAGGACCTGAACTCTTGTGCTAACTCAAACAATTTCACACCAACCCAGCCTGCCACCTGCTTCAGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      90498 81 -    486031 GGAGACT----G--TGCTTTTCAGGACCTGAACTCATGTGCTCACACAAACAATTCTATACCAACCCAGCCTGCCACCTTCTTCAGC
i aotNan1.NW_018496901v1   C 0 C 0
s canFam3.chr35            26345154 68 +  26524999 GAGGGCCATTTGTTTGCTTGTTGGAGCAT------TTGC-------------ATTCCCCTGGGCCCCTCCCTCCCACCTTCCCTTCC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               363067 883 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            29157 281 +     53444 I
e proCoq1.NW_012149775v1     172686 248 -   1411461 I
e otoGar3.GL873550           317161  0 +  18854210 C

a score=648424.000000
s hg38.chr6_GL000254v2_alt  1488970 66 +   4827813 GAGACTCATGAGCGACATCCATGATGCCCATTTATTACCTCCCACTC---CTATGACTTTTTTA-TTTCG
s panTro5.chr6             30358397 66 + 175400573 GAGACTCATGAGCGACATCCATGATGCCCATTTATTACCTCCCACTC---CTATGACTTTTTTA-TTTCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30592740 66 + 173848474 GAGACTCATGAGCGACATCCATGATGCCCATTTATTACCTCCCACTC---CTATGACTTTTTTA-TTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     299828 66 +   2037526 GAGACTCATGAGCGACATCCATGATGCCCATTTATTACCGCCCACTC---CTATGACTTTTTTA-TTTCG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74965815 66 + 122973662 GAGACTCATGAGCAACATCCATGGTGCCCATTTATTACCTCCCACTC---CTATGACCTTTTTA-TTTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30844809 66 + 172585720 GAGACTCATGAGCGACATCCATGGTGCCCATTTATTACCTCCCACTC---CTATGACTTTTTTA-TTTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134296 66 - 170955103 GAGACTCATGAGCGACATCCATGGTGCCCATTTATTACCTCCCACTC---CTATGACTTTTTTA-TTTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     383519 66 +   1495729 GAGACTCATGAGCGACATCCATGGTGCCCATTTATTACCTCCCACTC---CTATGACTTTTTTA-TTTCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485227 66 -    863181 GAGACTCATGAGCGACATCCATGGTGCCCATTTATTACCTCCCACTC---CTATGACTTTTTTA-TTTCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29633656 66 -  71996105 GAGACTCATGAGCGACATCCATGGTGCCCATTTATTACCTCCCACTC---CTATGACTTTTTTA-TTTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     353602 66 -    735854 GAGACTCATGAGCGACATCCATGGTGCCCATTTATTACCTCCCACTC---CTATGACTTTTTTA-TTTCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     272186 66 -   1829203 GAGACTCATGAGCGACATCCGTGGTGCCCATTTATTACTTCCCACTC---CTATGACTTTTTTA-TTTCG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30471193 65 + 171630274 GAGACCCGTGAGCGACATCCATGTTGCCCATTTATTACCCCCCACTC---CTATCAC-TTTTTA-TTCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           278728 65 +    515838 GAGACCCGTGAGCCACATCCATGTTGCCCATTTATTACCTCCCACTC---CCATCAC-TTTTTA-TTCCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     907965 65 -   1771730 GAGACCCGTGAGCGACATCCGTGTTGCCCATTTATTACCTCCCACGC---CTATCAC-TTTTTA-CTCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      90579 66 -    486031 AAGACCCATGAGCAACATCCATGTTGCCCGTTTATTACCTCCCACTC---CTATCAC-TTTTTATTTCCC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           317161 67 +  18854210 GAGACCCATAAGCCATGCTCCTGTTAGCCAGTTATTACCTCCCACTCTGTCTATGAGTTTTTTA-TCC--
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26345222 31 +  26524999 ATCTCTGCCGTGGGTCATCCATGGTGCCCAT---------------------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               363067 883 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            29157 281 +     53444 I
e proCoq1.NW_012149775v1     172686 248 -   1411461 I

a score=5274.000000
s hg38.chr6_GL000254v2_alt  1489036 1 +   4827813 T
s panTro5.chr6             30358463 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30592806 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     299894 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74965881 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30844875 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134362 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     383585 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485293 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29633722 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     353668 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     272252 1 -   1829203 C
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30471258 1 + 171630274 C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           278793 1 +    515838 C
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     908030 1 -   1771730 C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      90645 1 -    486031 C
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     172934 1 -   1411461 T
i proCoq1.NW_012149775v1   I 248 C 0
s otoGar3.GL873550           317228 1 +  18854210 T
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               363067 883 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            29157 281 +     53444 I
e canFam3.chr35            26345253 0 +  26524999 C

a score=213102.000000
s hg38.chr6_GL000254v2_alt  1489037 14 +   4827813 CTCTGCTGGGAAAT
s panTro5.chr6             30358464 14 + 175400573 CTCTGCTGGGAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30592807 14 + 173848474 CTCTGCTGGGAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     299895 14 +   2037526 CTCTGCTGGGAAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74965882 14 + 122973662 CTCTGCTGGGAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30844876 14 + 172585720 CTCTGCTGGGAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134363 14 - 170955103 CTCTGCTGGGAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     383586 14 +   1495729 CTCTGCTGGGAAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485294 14 -    863181 CTCTGCTGGGAAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29633723 14 -  71996105 CTCTGCTGGGAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     353669 14 -    735854 CTCTGCTGGGAAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     272253 14 -   1829203 CTCTGCTGGGAAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30471259 14 + 171630274 CTCTGCTGAGAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           278794 14 +    515838 CTCTGCTGAGAAAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     908031 14 -   1771730 CTCTGCTGAGAAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      90646 14 -    486031 CTCTGCTGAGAAAT
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               363950 14 + 123392446 CTCTGCTGGGGAAT
i micMur3.chr6             I 883 C 0
s proCoq1.NW_012149775v1     172935 14 -   1411461 CTCTGCTGGGAAGC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           317229 14 +  18854210 CTCTGATGGGAAAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26345253 10 +  26524999 -TCTACCG---AAT
i canFam3.chr35            C 0 C 0
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            29157 281 +     53444 I

a score=965755.000000
s hg38.chr6_GL000254v2_alt  1489051 70 +   4827813 GCCTGC----------AGGAAACACCCA-GT----------------GACGTGACACGTTTTTAGTAACTTTGTGGTGACATCACTGTCTTCTCTGC
s panTro5.chr6             30358478 70 + 175400573 GCCTGC----------AGAAAACACCCA-GT----------------GACGTGACACGTTTTTAGTAACTTTGTGGTGACATCACTGTCTTCTCTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30592821 70 + 173848474 GCCTGC----------AGAAAACACCCA-GT----------------GACGTGACACGTTTTTAGTAACTTTGTGGTGACATCACTGTCTTCTCTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     299909 70 +   2037526 GCCTGC----------AGGAAACACCCA-GT----------------GACGTGACACGTTTTTAGTAACTTTGTGGTGACATCACTGTCTTCTCTGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74965896 69 + 122973662 GCCTGC----------AGGAAACACCCA-GT----------------GACGTGACACATTTTTAGTAACTTCGTGGTGCCATCACTGTCTTCTCT-C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30844890 70 + 172585720 GCCTTC----------AGGTAACACCCA-GT----------------GACATGACACATTTTTAGTATCTTCGTGGTGACATCACTGTCTTCTCTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134377 70 - 170955103 GCCTTC----------AGGTAACACCCA-GT----------------GACATGACACATTTTTAGTATCTTCGTGGTGACATCACTGTCTTCTCTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     383600 70 +   1495729 GCCTTC----------AGGTAACACCCA-GT----------------GACATGACACATTTTTAGTATCTTCGTGGTGACATCACTGTCTTCTCTGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485308 70 -    863181 GCCTTC----------AGGTAACACCCA-GT----------------GACATGACACATTTTTAGTAACTTCGTGGTGACATCACTGTCTTCTCTGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29633737 70 -  71996105 GCCTTC----------GGGTAACACCCA-GT----------------GACATGACACATTTTTAGTATCTTCGTGGTGACATCACTGTCTTCTCTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     353683 70 -    735854 GCCTTC----------AGGTAACACCCA-GT----------------GACATGACACATTTTTAGTAACTTCGTGGTGACATCACTGTCTTCTCTGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     272267 70 -   1829203 GCCTTC----------GGGTAACACCCA-GT----------------GACATGACACATTTTTAGTAACTTCGTGGTGACATCGCTGTCTTCTCTGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30471273 70 + 171630274 GCCTGC----------AGGTAACACCCA-GT----------------GATGTGACACATTTTTAGTAACTTCGTGGTGACATCACTGTCTTCTCTGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           278808 70 +    515838 GCCTGC----------AGGTAACACCCA-GT----------------GATATGACACATTTTTAGTAACTTCGTGGTGACATCACTGGCTTCTCTGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     908045 70 -   1771730 GCCTGC----------AGGTAACACCCA-GC----------------GATGTGACACATTTTTAGTAACTTCATGGTGACATCACTGTCTTCTCTGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      90660 70 -    486031 GCCTGC----------AGGTAACACCCA-GT----------------GATGTGACACATTTTTAGTAACTTCATGGTGACATCACTGTCTTCTCTGC
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               363964 70 + 123392446 GCCTGC----------AGGTGTCGCCCA-GG----------------GACCTGGCGCGCCTTTAGTCACTTGGTGGTGACATCACTGTCTCCTCTGC
i micMur3.chr6             C 0 I 1583
s proCoq1.NW_012149775v1     172949 70 -   1411461 GCCTGC----------AGGTAACGCCCA-GT----------------GACGTGGCACATTTTTAGTCACTTTGCGGTGACATCACTGTCTCCTCTGC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           317243 86 +  18854210 GCCTGC----------AGGTAACACCCA-GGCACATGGGTGTTTTTAAACATGGCGCATTTTTAACACCTTTGTGGTGACATCATTGTCTCCTCCTC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26345263 39 +  26524999 G-CTGC----------CGGTGACACCCA-GG----------------------------------------------GGCACCCCTGTGTCCTCTGC
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            29438 71 +     53444 GCCTGCCTCCTTCATTGGGAAGCACCTGCGT----------------GAAGTCCC----------TAACTTCCTGGTGACAGCATGGTCTCTTCTGC
i dasNov3.JH567297         I 281 C 0
e mm10.chr17               58102128 1069 -  94987271 I

a score=134751.000000
s hg38.chr6_GL000254v2_alt  1489121 11 +   4827813 TTACTGCAGCT-------
s panTro5.chr6             30358548 11 + 175400573 TTACTGCAGCT-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30592891 11 + 173848474 TTACTGCAGCT-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     299979 11 +   2037526 TTACTGCAGCT-------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74965965 11 + 122973662 TTACTGCAGCT-------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30844960 11 + 172585720 TTACTGCAGCT-------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134447 11 - 170955103 TTACTGCAGCT-------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     383670 11 +   1495729 TTACTGCAGCT-------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485378 11 -    863181 TTACTGCAGCT-------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29633807 11 -  71996105 TTACTGCAGCT-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     353753 11 -    735854 TTACTGCAGCT-------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     272337 11 -   1829203 TTATTGCGGCT-------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30471343 11 + 171630274 TTACTGCAGCT-------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           278878 11 +    515838 TTACTGCAACT-------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     908115 11 -   1771730 TTACTGCAGCT-------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      90730 11 -    486031 TTACTGCAGCT-------
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     173019 11 -   1411461 TGACTGAAGCT-------
i proCoq1.NW_012149775v1   C 0 I 80
s otoGar3.GL873550           317329 10 +  18854210 TTACTGAAGC--------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26345302 11 +  26524999 CTCCTGTGGCT-------
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            29509 12 +     53444 ------CAGCTTCAAGCT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               364034 1583 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I

a score=1237940.000000
s hg38.chr6_GL000254v2_alt  1489132 114 +   4827813 TTCTGTTCACCAAATGCCCTTGCTGACCCCTCACACACACAGTCCTTTGACCTTGATTTCACCAGGAAATTCTCAGGCCG-GAAAGAACTTTC--AGTTGTCTTCACCATCCCCTGA
s panTro5.chr6             30358559 114 + 175400573 TTCTGTTCACCAAATGCCCTTGCTGACCCCTCACACACACAGTCCTTTGACCTTGATTTCACCAGGAAATTCTCAGGCCG-GAAAGAACTTTC--AGTTGTCTTCACCATCCCCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30592902 114 + 173848474 TTCTGTTCACCAAATGCCCTTGCTGACCCCTCACACACACAGTCCTTTGACCTTGATTTCACCAGGAAATTCTCAGGCCG-GAAAGAACTTTC--AGTTGTCTTCACCATCCCCTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     299990 114 +   2037526 TTCTGTTCACCAAATGCCCTTGCTGACCCCTCACACACACAGTCCTTTGACCTTGATTTCACCAGGAAATTCTCAGGCTG-GAAAGAACTTTC--AGTTGTCTTCACCATCCCCTGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74965976 114 + 122973662 TTCTGTTCACCAAATGCCCTTGCTGACCCCTCACACACACAGTCCTTTGACCTTGATTTCACCCGCAAATTCTCAGGCTG-GGAAGAACTTTC--GGTTGTCTTCACCATCCCCTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30844971 114 + 172585720 TTCTGTTTGCCAAATGCCCTTGCTGACCCCTCACACACACAGTCCTTTGACCTTGATTTCACCAGCAAAGTCTCAGGCCC-AAAAGAAGTTTC--AGTTGTCTTCACCATCCCCTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134458 114 - 170955103 TTCTGTTTGCCAAATGCCCTTGCTGACCCCTCACACACACAGTCCTTTGACCTTGATTTCACCAGCAAAGTCTCAGGCCC-GAAAGAAGTTTC--AGTTGTCTTCACCATCCCCTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     383681 114 +   1495729 TTCTGTTTGCCAAATGCCCTTGCTGACCCCTCACACACACAGTCCTTTGACCTTGATTTCACCAGCAAAGTCTCAGGCCC-GAAAGAAGTTTC--AGTTGTCTTCACCATCCCCTGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485389 114 -    863181 TTCTGTTTGCCAAATGCCCTTGCTGACCCCTCACACACACAGTCCTTTGACTTTGATTTCACCAGCAAAGTCTCAGGCCC-GAAAGAAGTTTC--AGTTGTCTTCACCATCCCCTGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29633818 114 -  71996105 TTCTGTTTGCCAAATGCCCTTGCTGACCCCTCACACACACAGTCCTTTGACCTTGATTTCACCAGCAAAGTCTCAGGCCC-GAAAGAAGTTTC--AGTTGTCTTCACCATCCCTTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     353764 114 -    735854 TTCTGTTTGCCAAATGCCCTTGCTGACCCCTCACACACACAGTCCTTTGACTTTGATTTCACCAGCAAAGTCTCAGGCCC-GAAAGAAGTTTC--AGTTGTCTTCACCATCCCCTGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     272348 114 -   1829203 TTCTGTTTGCCAAATGCCCTTGCTGACCCCTCACATACACAGTCCTTTGACCTTGATTTCACCAGCAAAGTCTCAGGCCA-GAAAGAAGTTTC--AGTTGTCTTCACCATCCCCTGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30471354 114 + 171630274 TTTTGTTTGCCAAATGCCCTTGCTTACCTGTCGTACACACAGTCCTTTGACCTTGATTTCACCAGCAAAGTTTCGGGCCA-GGAAGAACTTTC--AGTTGTTTTCTCCATCCCCCGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           278889 114 +    515838 TTTTGTTTGCCAAATGCCCTTGTTTACCGCTCATACACACAGTCCTTTGACCTTGATTTCTCCAGCAAAGTCTCAGGCCG-GAAAGAACTTCC--AGTTCTCTTCTCCATCCCTCGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     908126 114 -   1771730 TTTTGTTTGCCAAATGCCCTTGCTTACTGCTCCTACACACAGTCCTTTGACCTTGATTTCACCAGCCAAGTCTCAGGCCA-GAAAGAACTTTC--AGTTGTCTTCTCCATCCCCCGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      90741 114 -    486031 TTTCGTTTGCCAAATGCCCTTGCTCACCCCTCATACACACAGTCCTTTGACCTTGATTTCACCAGCAAAGTCTCAGGCCA-GAAAGAACTTTC--AGTTGTCTTCTCCATCCCCCGA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           317339  94 +  18854210 -TCTGTTTCCTGAATGCCCTCGCTAACCTCTC--ACACACGGTCCTGGGGTCTCAATTTCAGCAACGGAATCTCAGACCA--------------------TCTTGTCCATCCCTTGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26345313  96 +  26524999 CTCTCTTC-------GCCTCTGCCAACCTCT----------GGCCCCTGACCTCAATTCATCCAG---ACTCTCAGGGTGAGGAAGAACTTCCCAGGTCCCCTCCCCTGACTCCAG-
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            29521  95 +     53444 TTCTTT---------GCCTTTGTTGACTTCTCAGTCA-----TCCCTTGACCTTGATG-CATCAACAGAATCTCAGGGCC-------ATTTTCAAAGTCATCTTCTCCAGCTCCCAA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               364034 1583 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     173030  80 -   1411461 I

a score=426998.000000
s hg38.chr6_GL000254v2_alt  1489246 36 +   4827813 CTTCTACCTGTACATCTC-------------CA---AAATCTCCT------------------------C----AAAAAA
s panTro5.chr6             30358673 36 + 175400573 CTTCTACCTGTACATCTC-------------CA---AAATATCCT------------------------C----AAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593016 36 + 173848474 CTTCTACCTGTACATCTC-------------CA---AAATATCCT------------------------C----AAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300104 36 +   2037526 CTTCTACCTGTACATCTC-------------CA---AAATCTCCT------------------------C----AAAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966090 36 + 122973662 CTTCTACCTGTATATCTC-------------CA---AAATCTCCT------------------------C----AGAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845085 36 + 172585720 CTTCTACCTGTACATCTC-------------CA---AAGTGTCCT------------------------C----AAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134572 36 - 170955103 CTTCTACCTGTACATCTC-------------CA---AACTGTCCT------------------------C----AAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     383795 36 +   1495729 CTTCTACCTGTACATCTC-------------CA---AACTGTCCT------------------------C----AAAAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485503 36 -    863181 CTTCTACCTGTACATCTC-------------CA---AAATCTCCT------------------------C----AAAAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29633932 36 -  71996105 CTTCTACCTGCACATCTC-------------CA---AAATCTCCT------------------------C----AAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     353878 36 -    735854 CTTCTACCTGTACATCTC-------------CA---AAATCTCCT------------------------C----AAAAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     272462 36 -   1829203 CTTCTACCTGCACATCTC-------------TA---AAATCTCCT------------------------C----AAAAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30471468 36 + 171630274 CTTCTACCCGTCCATCAA-------------CA---AAATCTTCT------------------------C----AAAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           279003 36 +    515838 CTTCTACCTGTACATCAA-------------CA---AAATCTCCT------------------------T----GAAAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     908240 36 -   1771730 CTTCTACCTGTACATCAA-------------CA---AAATCTCCT------------------------C----AAAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      90855 37 -    486031 CTTCTACCAGTACATCAA-------------CA---AAATCTCCT------------------------C---AAAAAAA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     173110 36 -   1411461 CTTCTACCTATACAGCTC-------------CA---AAATCTCCT------------------------A----AAAAAA
i proCoq1.NW_012149775v1   I 80 I 1793
s otoGar3.GL873550           317433 36 +  18854210 CTTCTACATGTACATCTC-------------CA---AAATCTCCT------------------------A----AACAAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26345409 73 +  26524999 CCTCTGTCTGTATATCTCTTCTTGACCAAAGCA---ATACATTTTGAGAGTTTACAAGAGGAAATGAGGC----AAAAAA
i canFam3.chr35            C 0 I 20
s dasNov3.JH567297            29616 42 +     53444 CCTCTACCCGTAAATCTC-------------CAGGGGAATCTTCT------------------------CTCTCAGAGA-
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               364034 1583 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I

a score=307247.000000
s hg38.chr6_GL000254v2_alt  1489282 45 +   4827813 GATTTAA------------------AAAAAAAAATCTGAA-------------------GTGGGAAAGATTTAG----TGAAACAC
s panTro5.chr6             30358709 44 + 175400573 GATTT-A------------------AAAAAAAAATCTGAA-------------------GTGGGAAAGATTTAG----TGAAACAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593052 44 + 173848474 GATTT-A------------------AAAAAAAAATCTGAA-------------------GTGGGAAAGATTTAG----TGAAACAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300140 45 +   2037526 GATTTAA------------------AAAAAAAAATCTGAA-------------------GTAGGAAATATTTAC----TGAAACAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966126 43 + 122973662 GATATTT------------------TAAAAAAATTCTGAA-------------------GTGGGAAAGATTTAG----TGAA--AC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845121 44 + 172585720 GATTTTT-------------------TTTAAAAATCTGAA-------------------GTGGGAAATATTTAG----TGAAACAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134608 44 - 170955103 GATTTTT-------------------TTAAAAAATCTGAA-------------------GTGGGAAATATTTAG----TGAAACAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     383831 44 +   1495729 GATTTTT-------------------TTAAAAAATCTGAA-------------------GTGGGAAATATTTAG----TGAAACAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485539 45 -    863181 GATTTTT------------------AAAAAAAAATCTGAA-------------------GTGGGAAATATTTAG----TGAAACAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29633968 45 -  71996105 GATTTTT------------------TTAAAAAAATCTGAA-------------------GTGGGAAATATTTAG----TGAAACAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     353914 45 -    735854 GATTTTT------------------AAAAAAAAATCTGAA-------------------GTGGGAAATATTTAG----TGAAACAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     272498 44 -   1829203 GATTTTT-------------------TTAAAAAATCTGAA-------------------GTGGGAAATATTTAG----TGAAACAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30471504 44 + 171630274 GATTCTT-------------------TTAAAAAATCCAAA-------------------GTGGGAAAGATTGAA----TGAAGCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           279039 44 +    515838 GATTCTT-------------------TTAAAAATTCCGAA-------------------GTGGGAAAGATTTAG----TGAAACAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     908276 44 -   1771730 GATTCTT-------------------TTAAAAAATTTGAA-------------------GTGGGAAAGATTTAA----TGAAACAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      90892 44 -    486031 GATTCTT-------------------TTAAAAAATCTGAA-------------------GTGGGAAAGATTTAA----TGAAACAC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           317469 13 +  18854210 -ATTTTT-------------------TTGaa-----------------------------------------------------ac
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26345502 86 +  26524999 TACTCTTCATAAATAGCTAACAGCAACAACAAAATCTAAAAATATTTTTCTGACCCGCTGTGGGAAGAATCTAGCGAATGAAGCAC
i canFam3.chr35            I 20 C 0
s dasNov3.JH567297            29658 35 +     53444 -----------------------CATTTGAAGAGTTTGGA-------------------GAGGAAA-----CAA----AGAAACAC
i dasNov3.JH567297         C 0 I 6366
e micMur3.chr6               364034 1583 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     173146 1793 -   1411461 I

a score=859872.000000
s hg38.chr6_GL000254v2_alt  1489327 86 +   4827813 ACACTTTTCAG--CTAAT------AGCACATCCTGATCTTTAGTTCACAAATCTC------TTCTCGT----TTTGTTTTCTATTTTATCATTCACCCTCCAAC
s panTro5.chr6             30358753 86 + 175400573 ACACTTTTCAG--CTAAT------AGCACATCCTGATCTTTAGTTCACAAATCTC------TTCTCGT----TTTGTTTTCTATTTTATCATTCACCCTCCAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593096 86 + 173848474 ACACTTTTCAG--CTAAT------AGCACATCCTGATCTTTAGTTCACAAATCTC------TTCTCGT----TTTGTTTTCTATTTTATCATTCACCCTCCAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300185 86 +   2037526 ACACTTTTCAG--CTAAT------AGCACATCCTGATCTTTAGTTCACAAATCTC------TTCTCGT----TTTGTTTTCTATTTTATCATTCACCCTCCAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966169 84 + 122973662 GCACTTTTCAG--CTAAT------AGCGCATCCTGATCTTTAGTTCACAGATCTC------TTCTCGT----TTTGTTT--TATTTTATTATTCACCCTCCAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845165 85 + 172585720 ACACTTTTCAG--CTAAT------AGTACATCCTGATCTTTCGTTCACAAATCTC-------TCTCGT----TTTGTTTTCCATTTTATCATCCACCCTCCAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134652 85 - 170955103 ACACTTTTCAG--CTAAT------AGTACATCCTGATCTTTCGTTCACAAATCTC-------TCTCGT----TTTGTTTTCCATTTTATCATCCACCCTCCAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     383875 85 +   1495729 ACACTTTTCAG--CTAAT------AGTACATCCTGATCTTTCGTTCACAAATCTC-------TCTCGT----TTTGTTTTCCATTTTATCATCCACCCTCCAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485584 86 -    863181 ACACTTTTCAG--CTAAT------AGCGCATCCTGATCTTTCGTTCACAAATCTC------TTCTCGT----TTTGTTTTCCATTTTATCATCCACCCTCCAAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634013 86 -  71996105 ACACTTTTCAG--CTAAT------AGCTCATCCTGATCTTTCGTTCACAAATCTC------TTCTCGT----TTTGTTTTCCATTTTATCATCCACCCTCCAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     353959 86 -    735854 ACACTTTTCAG--CTAAT------AGCGCATCCTGATCTTTCGTTCACAAATCTC------TTCTCGT----TTTGTTTTCCATTTTATCATCCACCCTCCAAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     272542 92 -   1829203 ACACTTTTCAG--CTAAT------AGCGCATCCTGATCTTTCGTTCACAAATCTCTTCTCGTTCTCGT----TTTGTTTTCCATTTTATCATCCACCCTCCAAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30471548 87 + 171630274 ACACTTTCCAG--CTAAT------AGTGCATCCTGCTCTTTAGTTCACAAATCTG-----TTTCTCGT----TTTGTTTTCCATTTTATCATACACCCTCCAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           279083 85 +    515838 ACGCTTTCCAG--CTAAC--------TGCATCCTGCTCTTTAGTTCACAAATCTG-----TTTCTCGT----TTTGTTTTCCATTTTATCATCTACCCTCCAAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     908320 84 -   1771730 ACACTTTTCAG--CTAAC------AGTGCATCCTGCTCTTTAGTTCACAAATCTG-----TTTCTCGT----TTCGTTTTCCATTTCATCATACACCCTCC---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      90936 87 -    486031 ACACTTTCCAG--CTAAC------AGTGCATCCTGCTCTTTAGTTCACAAATCTG-----TTTCTCAT----TTTGTTTTCCATTTTATCATACACCCTCCAAC
i aotNan1.NW_018496901v1   C 0 I 114
s otoGar3.GL873550           317482 97 +  18854210 atactcttcag--ttaatgaaggaagtttgtccttatctttagtttacaagtcct-----tttcttgtgttatttattttccattttatcactattcctctccc
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26345588 73 +  26524999 ACAGTCTTCCGTTTTAAC------TGCATGTCCTTATCTTTGGCTCACAAACGCA-----CTTCCTAA-----------------TTACCACTCCCCTCCC---
i canFam3.chr35            C 0 C 0
e micMur3.chr6               364034 1583 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            29693 6366 +     53444 I
e proCoq1.NW_012149775v1     173146 1793 -   1411461 I

a score=323817.000000
s hg38.chr6_GL000254v2_alt  1489413 33 +   4827813 TGCCCCCC-GAACCATGGGCAGCCATTTAAAGCA
s panTro5.chr6             30358839 34 + 175400573 TGCCCCCCTGAACCATGGGCAGCCATTTAAAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593182 34 + 173848474 TGCCCCCCTGAACCATGGGCAGCCATTTAAAGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300271 34 +   2037526 TGCCCCCCTGAACCATGGGCAGCCATTTAAAGCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966253 34 + 122973662 CGCCCCCCTGAACCATGGGCAGCCATTTAAAGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845250 34 + 172585720 CGCCCCCCTGAACCATGGGCAGCCATTTAAAGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134737 34 - 170955103 CGCCCCCCTGAACCATGGGCAGCCATTTAAAGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     383960 34 +   1495729 CGCCCCCCTGAACCATGGGCAGCCATTTAAAGCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485670 34 -    863181 CGCCCCCCTGAACCATGGGCAGCCATTTAAAGCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634099 34 -  71996105 CGCCCCCCTGAACCATGGGCAGCCATTTAAAGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     354045 34 -    735854 CGCCCCCCTGAACCATGGGCAGCCATTTAAAGCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     272634 33 -   1829203 CGCCCCCC-GAACCATGGGCAGCCGTTTAAAGCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30471635 34 + 171630274 CACCTCCCTGAACCATGGGCAGCCATTTAAAGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           279168 34 +    515838 CACCTCCCTGAACCATGGGCAGCCATTTAAAGCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     908404 24 -   1771730 ----------AACCATGGGCAGCCATTTAAAGCA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           317579 31 +  18854210 atcccccct---ccatggacaaccattaaaggca
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26345661 23 +  26524999 ---TTCCCT--------GGCAACCTTTTAGAGTC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               364034 1583 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            29693 6366 +     53444 I
e proCoq1.NW_012149775v1     173146 1793 -   1411461 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I

a score=67680.000000
s hg38.chr6_GL000254v2_alt  1489446 7 +   4827813 TTTGTTG
s panTro5.chr6             30358873 7 + 175400573 TTTGTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593216 7 + 173848474 TTTGTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300305 7 +   2037526 TTTGTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966287 7 + 122973662 TTTGTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845284 7 + 172585720 TTTGTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134771 7 - 170955103 TTTGTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     383994 7 +   1495729 TTTGTTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485704 7 -    863181 TTTGTTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634133 7 -  71996105 TTTGTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     354079 7 -    735854 TTTGTTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     272667 7 -   1829203 TTTGTTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30471669 4 + 171630274 TT---TG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           279202 7 +    515838 TTTGCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     908428 7 -   1771730 TTTGCTG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           317610 7 +  18854210 tttgttc
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26345684 7 +  26524999 TTTGTTG
i canFam3.chr35            C 0 I 1
s dasNov3.JH567297            36059 6 +     53444 TTTGTT-
i dasNov3.JH567297         I 6366 C 0
e micMur3.chr6               364034 1583 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     173146 1793 -   1411461 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I

a score=10028.000000
s hg38.chr6_GL000254v2_alt  1489453 1 +   4827813 T
s panTro5.chr6             30358880 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593223 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300312 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966294 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845291 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134778 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384001 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485711 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634140 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     354086 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     272674 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30471673 1 + 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           279209 1 +    515838 T
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     908435 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               365617 1 + 123392446 T
i micMur3.chr6             I 1583 C 0
s proCoq1.NW_012149775v1     174939 1 -   1411461 T
i proCoq1.NW_012149775v1   I 1793 C 0
s otoGar3.GL873550           317617 1 +  18854210 t
i otoGar3.GL873550         C 0 I 1401
e mm10.chr17               58102128 1069 -  94987271 I
e dasNov3.JH567297            36065 0 +     53444 C
e canFam3.chr35            26345691 1 +  26524999 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I

a score=79515.000000
s hg38.chr6_GL000254v2_alt  1489454 5 +   4827813 TATTT
s panTro5.chr6             30358881 5 + 175400573 TATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593224 5 + 173848474 TATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300313 5 +   2037526 TATTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966295 5 + 122973662 TATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845292 5 + 172585720 TATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134779 5 - 170955103 TATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384002 5 +   1495729 TATTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485712 5 -    863181 TATTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634141 5 -  71996105 TATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     354087 5 -    735854 TATTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     272675 5 -   1829203 TATTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30471674 5 + 171630274 TATTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           279210 5 +    515838 TATTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     908436 5 -   1771730 TACTT
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               365618 5 + 123392446 TATTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     174940 5 -   1411461 TATTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           319019 5 +  18854210 TATTT
i otoGar3.GL873550         I 1401 C 0
s canFam3.chr35            26345692 4 +  26524999 -GTTT
i canFam3.chr35            I 1 I 892
s dasNov3.JH567297            36065 5 +     53444 TATTT
i dasNov3.JH567297         C 0 C 0
e mm10.chr17               58102128 1069 -  94987271 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I

a score=575425.000000
s hg38.chr6_GL000254v2_alt  1489459 46 +   4827813 TTGCTTCTCTTATAGGTCATCAAAAACCTGAAAGCAAA--ATTTTTT-T
s panTro5.chr6             30358886 46 + 175400573 TTGCTTCTCTTATAGGTCATCAAAAACCTGAAAGCAAA--ATTTTTT-T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593229 46 + 173848474 TTGCTTCTCTTATAGGTCATCAAAAACCTGAAAGCAAA--ATTTTTT-T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300318 46 +   2037526 TTGCTTCTCTTATAGGTCATCAAAAACCTGAAAGCAAA--ATTTTTT-T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966300 46 + 122973662 TTGCTTCTCTTATAGGTCATCAAAAACCTGAAAGCAAA--ATATTTT-T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845297 46 + 172585720 TTGCTTCTCTTTTAGGTCATCAAAAACCCGAAAGCAAA--ACTTTTT-T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134784 46 - 170955103 TTGCTTCACTTTTAGGTCATCAAAAACCTGAAAGCAAA--ACTTTTT-T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384007 46 +   1495729 TTGCTTCACTTTTAGGTCATCAAAAACCTGAAAGCAAA--ACTTTTT-T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485717 46 -    863181 TTGCTTCTCTTTTAGGTCATCAAAAACCTGAAAGCAAA--ACTTTTT-T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634146 46 -  71996105 TTGCTTCTCTTTTAGGTCATCAAAAACCTGAAAGCAAA--ACTTTTT-T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     354092 46 -    735854 TTGCTTCTCTTTTAGGTCATCAAAAACCTGAAAGCAAA--ACTTTTT-T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     272680 46 -   1829203 TTGCTTCTCTTTTAGGTCATCAAAAACCTGAAAGCAAA--ACTTTTT-T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30471679 46 + 171630274 TTGCTTCTCTTATAGGTCATCAAAAACCTGAAAGCAAA--GGttttct-
i calJac3.chr4             C 0 I 250
s saiBol1.JH378341           279215 45 +    515838 TTGCTTCTCTTATAGGTCATCAAAAACCTGAAAGCAAA--ATTTTTT--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     908441 45 -   1771730 TTGCTTCTGTTATAGGCCATCAAAAACCTGAAAGCGAA--AACTTTT--
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               365623 46 + 123392446 TTGCTCCTCTCACAGTTTATCAGAAACCTAAAAGCAAA--TTTTTTT-T
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     174945 46 -   1411461 TTGCTCCTCTCACAGTTTATCAAAAACCTGAAAGCAAA--TTTTTTT-T
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           319024 48 +  18854210 TTGCTTCTCTTATAGTTTATCAAAAACCTAAAAGTGAACCTTTTTTT-A
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26346588 44 +  26524999 TTGCTTCCCTCATTGTTTATCAAAAACCTGAAAACAGA--TTTTTT---
i canFam3.chr35            I 892 C 0
s dasNov3.JH567297            36070 44 +     53444 TTGCTTCCCTCATGGTTTTTCAAAAACCTGCAAGCAAA--TTACTT---
i dasNov3.JH567297         C 0 C 0
e mm10.chr17               58102128 1069 -  94987271 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I

a score=270350.000000
s hg38.chr6_GL000254v2_alt  1489505 17 +   4827813 AGAAACTCAAATCATTC
s panTro5.chr6             30358932 17 + 175400573 AGAAACTCAAATCATTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593275 17 + 173848474 AGAAACTCAAATCATTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300364 17 +   2037526 AGAAACTCAAATCATTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966346 17 + 122973662 AGAAACTCAAATCATTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845343 17 + 172585720 AGAAACTCAAATCATTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134830 17 - 170955103 AGAAACTCAAATCATTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384053 17 +   1495729 AGAAACTCAAATCATTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485763 17 -    863181 AGAAACTCAAATCATTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634192 17 -  71996105 AGAAACTCAAATCATTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     354138 17 -    735854 AGAAACTCAAATCATTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     272726 17 -   1829203 AGAAACTCAAATCATTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30471975 17 + 171630274 AAAAACTCAAATCATTC
i calJac3.chr4             I 250 C 0
s saiBol1.JH378341           279260 17 +    515838 AGAAACTCAAATCATTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     908486 17 -   1771730 AGAAACTCAAATCATTC
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               365669 17 + 123392446 AGAAATTCAAATCATTC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     174991 17 -   1411461 AGAAATTCAAATCATTC
i proCoq1.NW_012149775v1   C 0 I 177
s otoGar3.GL873550           319072 17 +  18854210 AGAAATTCAAATCATCC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26346632 17 +  26524999 AGGATCTGAAATCATTC
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            36114 17 +     53444 AGGAACTGAAATAATTC
i dasNov3.JH567297         C 0 C 0
e mm10.chr17               58102128 1069 -  94987271 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I

a score=180476.000000
s hg38.chr6_GL000254v2_alt  1489522 18 +   4827813 TTTAACTCCATAGCTTCA
s panTro5.chr6             30358949 18 + 175400573 TTTAACTCCATAGCTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593292 18 + 173848474 TTTAACTCCATAGCTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300381 18 +   2037526 TTTAACTCCATAGCTTCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966363 18 + 122973662 ATTATCTCCATAGCTTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845360 18 + 172585720 ATTATCTCCATAGCTTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134847 18 - 170955103 AATATCTCCATAGCTTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384070 18 +   1495729 AATATCTCCATAGCTTCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485780 18 -    863181 ATTATCTCCATAGCTTCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634209 18 -  71996105 ATTATCTCCATAGCTTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     354155 18 -    735854 ATTATCTCCATAGCTTCA
i manLeu1.NW_012107142v1   C 0 I 10432
s colAng1.NW_012115577v1     272743 18 -   1829203 ATTATCTCCATAGCTTCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30471992 18 + 171630274 ATTATCTTCATAGCTTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           279277 18 +    515838 ATTATCTTCATAGCTTGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     908503 18 -   1771730 ATTATCTTCATAGCTTCA
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               365686 18 + 123392446 ATTCCATCCATAGCTTTG
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           319089 18 +  18854210 ACTCTGTGCACAGTTTTA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26346649 18 +  26524999 ACTAACTCTATGGAGTTA
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            36131 18 +     53444 AGTATACCCTTAGCTTTG
i dasNov3.JH567297         C 0 C 0
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     175008 177 -   1411461 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I

a score=208354.000000
s hg38.chr6_GL000254v2_alt  1489540 21 +   4827813 AGGACACAGAGACACATCCAG
s panTro5.chr6             30358967 21 + 175400573 AGGACACAGCGACACATCCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593310 21 + 173848474 AGGACACAGCGACACATCCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300399 21 +   2037526 AGGACACAGCGACACATCCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966381 19 + 122973662 AGG--ACAGTGATACATCCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845378 21 + 172585720 AGGACACAGTGACCCATCCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134865 21 - 170955103 AGGACACAGTGACCCATCCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384088 21 +   1495729 AGGACACAGTGACCCATCCAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485798 21 -    863181 AGAACACAGTGACCCATCCAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634227 21 -  71996105 AGGACACAGTGACCCATCCAG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     272761 21 -   1829203 AGGACACAGTGACCCATCCAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30472010 21 + 171630274 AGGATACAGTGACCTATCCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           279295 21 +    515838 AGGACACAGTGACCTCTCCAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     908521 21 -   1771730 AGGACACAGTGACCTATCCAG
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               365704 21 + 123392446 GGGACACAGTGACCCATCCAG
i micMur3.chr6             C 0 I 176
s otoGar3.GL873550           319107 21 +  18854210 AGGACACACTGACCTCTCCAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26346667 21 +  26524999 GGGCCACAGAGACCTGTGGAA
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            36149 19 +     53444 -GGACTCA-TGACTCGCCCAG
i dasNov3.JH567297         C 0 C 0
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     175008 177 -   1411461 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e manLeu1.NW_012107142v1     354173 10432 -    735854 I

a score=227976.000000
s hg38.chr6_GL000254v2_alt  1489561 24 +   4827813 ATGCTGATTTAAGATTGAGAGAGA
s panTro5.chr6             30358988 24 + 175400573 ATGCTGATTTAAGATTGAGAGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593331 24 + 173848474 ATGCTGATTTAAGATTGAGAGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300420 24 +   2037526 ATGCTGATTTAAGATTGAGAGAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966400 19 + 122973662 ATAC-----TAAGATCGAGAGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845399 24 + 172585720 ATGCTGATTTAAGATTGAGAGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134886 24 - 170955103 ATGCTGATTTAAGATTGAGAGAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384109 24 +   1495729 ATGCTGATTTAAGATTGAGAGAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485819 24 -    863181 TTACTGATTTAAGATTGAGAGAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634248 24 -  71996105 ATACTGATTTAAGATTGAGAGAGA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     272782 24 -   1829203 ATACTGATTTAAGATTGAGAGAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30472031 24 + 171630274 ATACTGATTTAAGATTGAGGGAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           279316 24 +    515838 ATACTGATTTAAGATTGAGGGAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     908542 24 -   1771730 ATACTAATTTAAGATTGAGGGCGA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           319128 24 +  18854210 ATACTGATTTAAGATTGAAAGAGA
i otoGar3.GL873550         C 0 I 149
s canFam3.chr35            26346688 23 +  26524999 ACACTGATTTGAGATCTAGAGAG-
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            36168 22 +     53444 ATGCTGATTTAAGACTTAGAGC--
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               365725 176 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     175008 177 -   1411461 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e manLeu1.NW_012107142v1     354173 10432 -    735854 I

a score=701193.000000
s hg38.chr6_GL000254v2_alt  1489585  95 +   4827813 AGGCAC-----------------------------------------------------------------------------TGCCTACCT-GGGCTATGAGTTTGCACCTAGTAAAGGGCTCTATCTTGTCACTCATCCTAGTGAGGACCAGGCAGCAGAGGTAGCAGAGG
s panTro5.chr6             30359012  95 + 175400573 AGGCAC-----------------------------------------------------------------------------TGCCTACCT-GGGCTATGAGTTTGCACCTAGTAAAGGGCTCTATCTTGTCACTCATCCTAGTGAGGACCAGGCAGCAGAGGTAGCAGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593355  95 + 173848474 AGGCAC-----------------------------------------------------------------------------TGCCTACCT-GGGCTATGAGTTTGCACCTAGTAAAGGGCTCTATCTTGTCACTCATCCTAGTGAGGACCAGGCAGCAGAGGTAGCAGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300444  95 +   2037526 AGGCAC-----------------------------------------------------------------------------TGCCTACCT-GGGCTATGAGTTTGCACCTAGTAAAGGGCTCTATCTTGTCACTCATCCTAGTGAGGACCAGGCAGCAGAGGTAGCAGAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966419  95 + 122973662 AGGCAC-----------------------------------------------------------------------------TGCCTACCT-GGGCTATGAGTTTGTACCTAGTAAAGGGCTCTATCTTGTCACTCATCCTAGTGAGGACCAGGGAGCAGTGGTAGCAGAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845423  95 + 172585720 AGGCAC-----------------------------------------------------------------------------TGCCTGCCT-GGGCCATGGGTTTGCACCTAGTAAGGGGCTCTATCTTGTCACTCATCCTAGTGAGGACCAGGGAGCAGTGGTAGCAGAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30134910  95 - 170955103 AGGCAC-----------------------------------------------------------------------------TGCCTGCCT-GGGCCATGGGTTTGCACCTAGTAAGGGGCTCTATCTTGTCACTCATCCTAGTGAGGACCAGGGAGCAGTGGTAGCAGAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384133  95 +   1495729 AGGCAC-----------------------------------------------------------------------------TGCCTGCCT-GGGCCATGGGTTTGCACCTAGTAAGGGGCTCTATCTTGTCACTCATCCTAGTGAGGACCAGGGAGCAGTGGTAGCAGAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485843  95 -    863181 AGGCAC-----------------------------------------------------------------------------TGCCTGCCT-GGGCTATGGATTTGCACCTAGTAAGGGGCTCTATCTTGTCACTCATCCTAGTGAGGACCAGGGAGCAGTGGTAGCAGAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634272  95 -  71996105 AGGCAC-----------------------------------------------------------------------------TGCCTGCCT-GGGCTATGGGTTTGCACCTAGTAAGGGGCTCTATCTTGTCACTCATCCTAGTGAGGACCAGGGAGCAGTGGTAGCAGAGG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     272806  94 -   1829203 AGGCAC-----------------------------------------------------------------------------TGCCTGCCT-GGGCTATGGGTTTGCACCTAGTAA-GGGCTCTATCTTGTCACTCATCCTAGTGAGGACCAGGGAGCAGTGGTAGCAGAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30472055  65 + 171630274 AGGCAC--------------------------------------------------------------------------------------------------TTACACCTAATAAAGG----------GTCATTCATCCTAGTGAGGACCAGGGAGCAGTCGTAGCAGAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           279340  94 +    515838 ATACAC-----------------------------------------------------------------------------TGCCGGCCT-CGGCTACGGGTTTACATCTAGTAAAGGGCTCTG-CCTGTCATTCATCGTAGTGAGGATCAGGGAGCAGTGGTAGCAGAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     908566  94 -   1771730 AGGCAC-----------------------------------------------------------------------------TGCCAGCTT-GGGCTATGGGTTTACATCTAGTAAAGGGCTCTG-CCTGTCATTCATCCTAGTGAGGACCAGGAAGCAGTGGTAGCAGAGG
i cebCap1.NW_016107755v1   C 0 I 304
s otoGar3.GL873550           319301 169 +  18854210 aggcaggaggatggcttgaacccaggagtttgaggttgctaagagctaagctgatgccatggcagtctaaccgagagagcACATGCCTGCCTGGGGCTGTGGGTTTGCACCCAATCAAGGGTT----CTTGCTGGCCTTGCTGGAGAGGACCAGGGAGGAGCGGTACCAGAGG
i otoGar3.GL873550         I 149 C 0
s canFam3.chr35            26346711  67 +  26524999 AGGCCT-----------------------------------------------------------------------------TGCATCCTC-AGGCTATGGGCTTGTGGCCA--CAGAGGCTCTTGCC---CACCCAGC------AGGACAGGGG-----------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            36190  87 +     53444 AGGATG-----------------------------------------------------------------------------TGCCTGCCT-GGCCTGTG-GTTTGC-TCTAAGGAAGGCCTCTG-CTTGTCAATC----CAGCCAGG-CCAGGGAGGGGCCGTGCCAGAGG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               365725 176 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     175008 177 -   1411461 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e manLeu1.NW_012107142v1     354173 10432 -    735854 I

a score=22875.000000
s hg38.chr6_GL000254v2_alt  1489680 4 +   4827813 GTTG
s panTro5.chr6             30359107 4 + 175400573 GTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593450 4 + 173848474 GTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300539 4 +   2037526 GTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966514 4 + 122973662 GTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845518 4 + 172585720 CTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135005 4 - 170955103 CTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384228 4 +   1495729 CTTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485938 4 -    863181 CTTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634367 4 -  71996105 CTTG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     272900 4 -   1829203 TTTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30472120 4 + 171630274 CTTG
i calJac3.chr4             C 0 I 309
s saiBol1.JH378341           279434 4 +    515838 CTTG
i saiBol1.JH378341         C 0 I 328
s otoGar3.GL873550           319470 3 +  18854210 -TTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26346778 4 +  26524999 CTTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            36277 3 +     53444 -CTG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               365725 176 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     175008 177 -   1411461 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e cebCap1.NW_016107755v1     908660 304 -   1771730 I
e manLeu1.NW_012107142v1     354173 10432 -    735854 I

a score=170955.000000
s hg38.chr6_GL000254v2_alt  1489684 20 +   4827813 CCATTTCCTCTTTAAGGCAA
s panTro5.chr6             30359111 20 + 175400573 CCATCTCCTCTTTAAGGCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593454 20 + 173848474 CCATCTCCTCTTTAAGGCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300543 20 +   2037526 CCATCTCCTCTTTAAGGCAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966518 20 + 122973662 CCATCTCCTCTTTAAGGCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845522 20 + 172585720 ACATCTCCTCTTTAAGGCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135009 20 - 170955103 CCATCTCCTCTTTAAGGCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384232 20 +   1495729 CCATCTCCTCTTTAAGGCAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485942 20 -    863181 CCATCTCCTCTTTAAGGCAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634371 20 -  71996105 CTATCTCCTCTTTAAGGCAA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     272904 20 -   1829203 ACATCTCCTCTTTAAGGCAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30472433 20 + 171630274 CCATCTCCTCTTTAAGGCAA
i calJac3.chr4             I 309 C 0
s saiBol1.JH378341           279766 20 +    515838 CCATCTCCTCTTTAAGGAAG
i saiBol1.JH378341         I 328 C 0
s cebCap1.NW_016107755v1     908964 20 -   1771730 CCATCTCCTCTTTAAGGCAG
i cebCap1.NW_016107755v1   I 304 C 0
s otoGar3.GL873550           319473 20 +  18854210 TCACCTCCTCTTTAATACAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26346782 17 +  26524999 --GCCTCTCTGCTGACTCA-
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            36280 17 +     53444 GCATCCCCTC---AGGTCAG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               365725 176 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     175008 177 -   1411461 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e manLeu1.NW_012107142v1     354173 10432 -    735854 I

a score=381633.000000
s hg38.chr6_GL000254v2_alt  1489704 42 +   4827813 TTCCCTCCAGACTGGCTTCATGTGTTAATGTAAAATAGTAAG
s panTro5.chr6             30359131 42 + 175400573 TTCCCTCCAGACTGGCTTCATGTGTTAATGTAAAATAGTAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593474 42 + 173848474 TTCCCTCCAGACTGGCTTCATGTGTTAATGTAAAATAGTAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300563 42 +   2037526 TTCCCTCCAGACTGGCTTCATGTGTTAATGTAAAATAGTAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966538 42 + 122973662 TTCCCTCCAGACTGGCTTCACGTGTCAATGTAAAATAGTAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845542 40 + 172585720 TTCTCTCCAGACTGGCTTCACTTGTTAATGTAAAATAGT--A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135029 40 - 170955103 TTCTCTCCAGACTGGCTTCACTTGTTAATGTAAAATAGT--A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384252 40 +   1495729 TTCTCTCCAGACTGGCTTCACTTGTTAATGTAAAATAGT--A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     485962 40 -    863181 TTCTCTCCAGACTGGCTTCACTTGTTAATGTAAAATAGC--A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634391 40 -  71996105 TTCTCTCCAGACTGGCTTCATTTGTTAATGTAAAATAGT--A
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     272924 42 -   1829203 TTCTCTCCAGACTGGCTTCACTTGTTAATGTAGAATAGTAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30472453 42 + 171630274 TTCTCTCCCTACTGGCTTCACTTGTTAATGTAAAATAGTAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           279786 42 +    515838 TTCTCTCCCTACTGGCTTTACTTGTTAATGCAAAATAGTAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     908984 42 -   1771730 TTCTCTCCCTACTGACTTTACCTGTTAATGTAAAATAGTAAG
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     175185 42 -   1411461 TTCTCTCCAGACTGGCTTCGCTTGCTAATGGGAAGTAGTAAG
i proCoq1.NW_012149775v1   I 177 C 0
s otoGar3.GL873550           319493 42 +  18854210 TTCTCTCCAGACTGGCTTCACTTGTTAATGTGAAGTAGTAAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26346799 31 +  26524999 GTCCCACTAGGCTGGCTTCAC----TGGCGCAAAG-------
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            36297 36 +     53444 CTCTCTCCAGACTGGCTTCTTCTGCTCACA------AGTGAG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               365725 176 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e manLeu1.NW_012107142v1     354173 10432 -    735854 I

a score=725274.000000
s hg38.chr6_GL000254v2_alt  1489746 62 +   4827813 AAGTGCTAGAAGACTGTCATATAACTTTTATATGTTGAGAG-AAAGCACCCTGAAGTCAAGTA
s panTro5.chr6             30359173 62 + 175400573 AAGTGCTAGAAGACTGTCATATATCTTTTATATGTTGAGAG-AAAGCACCCTGAAGTCAAGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593516 62 + 173848474 AAGTGCTAGAAGACTGTCATATATCTTTTATATGTTGAGAG-AAAGCACCCTGAAGTCAAGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300605 62 +   2037526 AAGTGCTAGAAGACTGTCATATAACTTTTATATGTTGAGAG-AAAGCACCCTGAAGTCAAGTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966580 62 + 122973662 AAGTGCTAGAAGACTGTCATATAACTTTTATATGTTGAGAG-AAAGCACCCTGAAGTCAAGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845582 62 + 172585720 GAGTGCTAGAAGACCATCATATAACTTTTATATGTTGAGAG-AAAGCACCCTGAAGTCAAGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135069 62 - 170955103 GAGTGCTAGAAGACCATCATATAACTTTTATATGTTGAGAG-AAAGCACCCTGAAGTCAAGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384292 62 +   1495729 GAGTGCTAGAAGACCATCATATAACTTTTATATGTTGAGAG-AAAGCACCCTGAAGTCAAGTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486002 62 -    863181 GAGTGCTAGAAGACCGTCATATAACTTTTATATGTTGAGAG-AAAGCACCCTGAGGTCAAGTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634431 62 -  71996105 GAGTGCTAGAAGACCGTCATATAACTTTTATACGTTGAGAG-AAAGCACCCTGAAGTTAAGTA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     272966 62 -   1829203 GAGTGCTAGAAGACTGTCATATAACTTTTATATGTTGAGAG-AAAGCACCCTGAAGTCAAGTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30472495 62 + 171630274 AAGTGCTAGAAGACTGTCATATAACTTTCATATGTTGAGAG-AAAGCACCTtgatgttaacta
i calJac3.chr4             C 0 I 2189
s saiBol1.JH378341           279828 62 +    515838 AAGTGCTAGAAGACTGTCATATAACTTTCATATGTTGAGAG-AAAGCACCTTGAAGTCAAGTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     909026 62 -   1771730 AAGTGCTAGAAGACTGTCATATGACTTTCATATGTTGAGAG-AAAGCACCTTGAAGTCAAGTA
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               365901 63 + 123392446 AAGTGCCAGAAGATTGTCACGTAACTTTAAAATGTTGGGAATAAAGCACCATGAACTCAAGTA
i micMur3.chr6             I 176 C 0
s proCoq1.NW_012149775v1     175227 63 -   1411461 AGGGGCCAGAAGATTGTCACGTAACTTTAATATGGTGGGAGAAAAGCACCATGAAGTCAAGTA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           319535 63 +  18854210 AAGTGCCAGAAGATCGTCATGTAACTTTTATATGTTGGGAGAAAAGCACCCTGAAGTCAATAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26346830 61 +  26524999 -AGTTGCAG-GGATCAGCAAACAGCTTTTAGACATAGAGAGAAAAATATCCTGAATTCAGGTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            36333 63 +     53444 GACTGCTGGAACCGCAGCATACAACTCTTAGGTGCTGGGAGAAAAGTGCCCTGAAGTCGATCA
i dasNov3.JH567297         C 0 C 0
e mm10.chr17               58102128 1069 -  94987271 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e manLeu1.NW_012107142v1     354173 10432 -    735854 I

a score=53469.000000
s hg38.chr6_GL000254v2_alt  1489808 6 +   4827813 GAAATG
s panTro5.chr6             30359235 6 + 175400573 GAAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593578 6 + 173848474 GAAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300667 6 +   2037526 GAAATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966642 6 + 122973662 GAAATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845644 6 + 172585720 GGAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135131 6 - 170955103 GGAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384354 6 +   1495729 GGAATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486064 6 -    863181 GGAATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634493 6 -  71996105 GGAATT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     273028 6 -   1829203 GTAATT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           279890 6 +    515838 GAAATG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     909088 6 -   1771730 GAAATG
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               365964 6 + 123392446 GAAATG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     175290 6 -   1411461 GAAACG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           319598 6 +  18854210 GAAATG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26346891 5 +  26524999 -GAATA
i canFam3.chr35            C 0 I 1
s dasNov3.JH567297            36396 6 +     53444 GAAATG
i dasNov3.JH567297         C 0 C 0
e mm10.chr17               58102128 1069 -  94987271 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e calJac3.chr4             30472557 2189 + 171630274 I
e manLeu1.NW_012107142v1     354173 10432 -    735854 I

a score=74224.000000
s hg38.chr6_GL000254v2_alt  1489814 5 +   4827813 GTTCT
s panTro5.chr6             30359241 5 + 175400573 GTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593584 5 + 173848474 GTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300673 5 +   2037526 GTTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966648 5 + 122973662 GTTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845650 5 + 172585720 GTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135137 5 - 170955103 GTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384360 5 +   1495729 GTTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486070 5 -    863181 GTTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634499 5 -  71996105 GTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364605 5 -    735854 GTTCT
i manLeu1.NW_012107142v1   I 10432 C 0
s colAng1.NW_012115577v1     273034 5 -   1829203 GTTCT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           279896 5 +    515838 GTTCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     909094 5 -   1771730 GTTCT
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               365970 5 + 123392446 GTTCT
i micMur3.chr6             C 0 I 193
s proCoq1.NW_012149775v1     175296 5 -   1411461 GTTCT
i proCoq1.NW_012149775v1   C 0 I 62
s otoGar3.GL873550           319604 5 +  18854210 GTTCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26346897 5 +  26524999 ATCCT
i canFam3.chr35            I 1 C 0
s dasNov3.JH567297            36402 5 +     53444 ATTCT
i dasNov3.JH567297         C 0 C 0
e mm10.chr17               58102128 1069 -  94987271 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e calJac3.chr4             30472557 2189 + 171630274 I

a score=420278.000000
s hg38.chr6_GL000254v2_alt  1489819 70 +   4827813 GTTGCTATCTA-----TTATTTTT-----------------------------------TCTGTACTTCTAAGACTGT-A--AAAAAATTACCCATTACTATTTCCCCCCATC
s panTro5.chr6             30359246 71 + 175400573 GATGCTATCTA-----TTATTTTT-----------------------------------TCTGTACTTCTAAGACTGTAA--AAAAAATTACCCATTACTATTTCCCCCCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593589 71 + 173848474 GATGCTATCTA-----TTATTTTT-----------------------------------TCTGTTCTTCTAAGACTGTAA--AAAAAATTACCCATTACTATTTCCCCCCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300678 70 +   2037526 GTTGCTATCTA-----TTACTTTT-----------------------------------TCTGTACTTCTAAGACTGT-A--AAAAAATTACCCATTACTATTTCCCCCCATC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966653 61 + 122973662 GTTG----CTA-----TTATTTTT-----------------------------------TCTGTACTTCTAAGACTGT-A--AAAAAATTACCCATTACTATTTCCC-----C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845655 69 + 172585720 GTTGCTATGTG-----TTA-TTTT-----------------------------------TCTGTAGTTCTAAAACTGT-A--AAAAAATTACCCATTACTATTTCCCCCCATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135142 69 - 170955103 GTTGCTATGTG-----TTT-TTTT-----------------------------------TCTGTAGTTCTAAAACTGT-A--AAAAAATTACCCATTACTATTTCCCACCATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384365 69 +   1495729 GTTGCTATGTG-----TTT-TTTT-----------------------------------TCTGTAGTTCTAAAACTGT-A--AAAAAattacccattactatttcccaccatc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486075 69 -    863181 GTTGCTATCTG-----TTA-TTTT-----------------------------------TCTGTAGTTCTAAGACTGT-A--AAAAAATTACCCATTACTATTTCCCCCCATC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634504 69 -  71996105 GTTGCTATCTG-----TTA-TTTT-----------------------------------TCTGTAGTTCTAAGACTGT-A--AAAAAATTACCCATTACTATTTCCCCCCATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364610 69 -    735854 GTTGCTATCTG-----TTA-TTTT-----------------------------------TCTGTAGTTCTAAGACTGT-A--AAAAAATTACCCATTACTATTTCCCCCCATC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     273039 74 -   1829203 GTTGCTATCTGTTATTTTA-TTTT-----------------------------------TCTGTAGTTCTAAGACTGT-A--AAAAAATTACCCATTACTATTTCCCCCCATC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           279901 54 +    515838 GTTGCTA-------------------------------------------------------GTAGTAATAAGACTAT-T--AAAAAAATACCCATTGCT-TTTTTCCCCACC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     909099 70 -   1771730 GTTGCTAGCTG-----TTA-TTTT-----------------------------------TCTGTAGTAATAAGACTAT-TAAAAAAAAATACCCACTACT-TTTTTCCCCACC
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           319609 62 +  18854210 ---GATA-CTG-----TTA-TTTT-----------------------------------GGTGTAGTTCTAAGACT-T-A--AAAAAATTATTCATTACCTTTTTCTCATA--
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26346902 61 +  26524999 GTTACTG--TG-----TTA-TTTT-----------------------------------TTGGTAGTTT--AGACT-T-C--AAGAAATTACCCATTTCTTCTCCCAGCC---
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            36407 95 +     53444 GTTACTATCTG-----TTA-TTTTGTGAAGTCAGAGTTTTCTTTTTTGTCGTGTGTGTGTATGTAGT--TAAAACTTT-T--AAAAAAATATC----ACTGATTTCCCAT---
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               365975 193 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     175301 62 -   1411461 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e calJac3.chr4             30472557 2189 + 171630274 I

a score=467884.000000
s hg38.chr6_GL000254v2_alt  1489889 44 +   4827813 ATTATCCAATAAATAAACTCTCAAGTCCCTTACTCCAACCATGA
s panTro5.chr6             30359317 44 + 175400573 ATTATCCAATAAATAAACTCTCAAGTCCCTTACTCCAACCATGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593660 44 + 173848474 ATTATCCAATAAATAAACTCTCAAGTCCCTTACTCCAACCATGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300748 44 +   2037526 ATTATCCAATAAATAAACTCTCAAGTCCCTTACTCCAACCATGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966714 44 + 122973662 ATTATCCAATAAATAAACTCTCAAGTCCCTTACTCCAACCATGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845724 44 + 172585720 ATTACCCAATAAATAACTTCTCAAGTTCCCTACTCCAACCATGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135211 44 - 170955103 ATTACCCAATAAATAACTTCTCAAGTTCCCTACTCCAACCATGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384434 44 +   1495729 attacccaataAATAACTTCTCAAGTTCCCTACTCCAACCATGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486144 44 -    863181 ACTATCCAATAAATAACCTCTCAAGTTCCCTACTCCAACCATGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634573 44 -  71996105 ATTATCCAATAAATAACCTCTCAAGTTCCCTACTCCAACCATGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364679 44 -    735854 ACTATCCAATAAATAACCTCTCAAGTTCCCTACTCCAACCATGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     273113 44 -   1829203 ATTATCCAATAAATAACCTCTCAAGTTCCCTACTCCAACCATGA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           279955 44 +    515838 ATTATCCAATAAATAAACTCTCAAGTTCCTTACTCCAATCATGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     909169 44 -   1771730 ATTATCCAATAAATAAACTCTCAAGTCCCATACTCCAACCATGA
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     175363 44 -   1411461 ATTATCCACTAAATAAAATCTCAAGTTCCTTACGCCAAGCATGA
i proCoq1.NW_012149775v1   I 62 I 61
s otoGar3.GL873550           319671 44 +  18854210 ATTATCCTTTAAATAAAATCTCAAGTTCCTTTCGCCAAGCATGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26346963 44 +  26524999 ACCATCCACTCAGTGATCTTTAGGGCTGCTTAGCCCAAGCAGGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            36502 44 +     53444 ATTACCCATTAGCTAAACCCTCCTGCTCCTTAGCTCACGCATGA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               365975 193 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e calJac3.chr4             30472557 2189 + 171630274 I

a score=439302.000000
s hg38.chr6_GL000254v2_alt  1489933 61 +   4827813 TGCTCTAAAAGCATTTCTTTTTAGGCAGAATTTTACATTAGTTGCATTCTGGGATCAGGCC
s panTro5.chr6             30359361 61 + 175400573 TGCTCTAAAAGCATTTCTTTGTAGGCAGAATTTTACATTAGTTGCATTCTGGGATCAGGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593704 61 + 173848474 TGCTCTAAAAGCATTTCTTTGTAGGCAGAATTTTACATTAGTTGCATTCTGGGATCAGGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300792 61 +   2037526 TGCTCTAAAAGCATTTCTTTGTAGGCAGAATTTTACATTAGTTGCATTCTGGGATCAGGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966758 61 + 122973662 TGCTCCAAAAGCATTTTTTTGTAGGCAGAATTTTACATTAGTTGCATCCTGGGATCAAGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845768 61 + 172585720 TGCTCTAAAAACATTTCTTTGTAGGCAGAATTTTACATTACTTTCATCCTGAGATCAGGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135255 61 - 170955103 TGCTCTAAAAACATTTCTTTGTAGGCAGAATTTTACATTACTTTCATCCTGAGATCAGGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384478 61 +   1495729 TGCTCTAAAAACATTTCTTTGTAGGCAGAATTTTACATTACTTTCATCCTGAGATCAGGAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486188 61 -    863181 CACTCTAAAAACATTTCTTTGTAGGTAGAATTTTACATTACTTTCATCCTGAGATCAGGAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634617 61 -  71996105 CGCTCTAAAAACATTTCTTTGTAGGCAGAATTTTACATTACTTTCATCCTGAGATCAGGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364723 61 -    735854 CACTCTAAAAACATTTCTTTGTAGGTAGAATTTTACATTGCTTTCATCCTGAGATCAGGAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     273157 61 -   1829203 CGCTCTAAAAACATTTCTTTGTAGGCAGAATTTTACATTAGTTTCATCCTGCGATCAGGCC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           279999 61 +    515838 TTCTCCAAAAGCATTTCTTTGTAGGCAGAATTTTACATCAGTTTCATCCTGAGATCGGGCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     909213 49 -   1771730 TTC------------TCTTTGTAGGCAGAATTTTACATCAGTTTCATCCTGGGATCAGGCT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           319715 61 +  18854210 CACCTGAAAGGCACTTATTTTTAGGCAGAATTTTGTATTTGCCTCATCCTGGCTTTCAGAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26347007 36 +  26524999 TGTTTGGAGGAC-TCTGGTTCTAGGCAGGA---------------ACTCTGG---------
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            36546 58 +     53444 TGCTTTGGGGCTGCCTGTGTTTAGACAA---TGTACTTTAGCCTCAACCTTGGCTTGGACC
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               365975 193 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e proCoq1.NW_012149775v1     175407 61 -   1411461 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e calJac3.chr4             30472557 2189 + 171630274 I

a score=240904.000000
s hg38.chr6_GL000254v2_alt  1489994 28 +   4827813 CCCTACCGTGTTCCATTGACTCCTCCC-A
s panTro5.chr6             30359422 28 + 175400573 CCCTACCGTGTTCCATTGACTCCTCCC-A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593765 28 + 173848474 CCCTACCGTGTTCCATTGACTCCTCCC-A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300853 28 +   2037526 CCCTACCGTGTTCCATTGACTCCTCCC-A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966819 28 + 122973662 CCCTACCATGTTCCATTGACTCCTCCC-A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845829 28 + 172585720 CCCTACTGTGTTCCACTGACTCCTCCC-A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135316 28 - 170955103 CCCTACTGTGTTCCACTGACTCCTCCC-A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384539 28 +   1495729 CCCTACTGTGTTCCACTGACTCCTCCC-A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486249 28 -    863181 CCCTACTGTGTTCCACTGACTCCTCCC-A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634678 28 -  71996105 CCCTACTGTGTTCCACTGACTCCTCCC-G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364784 28 -    735854 CCCTACTGTGTTCCACTGACTCCTCCC-A
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     273218 28 -   1829203 CCCTACTGTGTTCCACTGACTCCTCCC-A
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           280060 28 +    515838 TCCTTCCGTGTTCCATTGACTCTCCCC-A
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     909262 28 -   1771730 CCCTTCCGTGTTCCATTGACTATCCCC-A
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     175468 27 -   1411461 CCCCACTGTGTTCCATCGGCTCCTCCA--
i proCoq1.NW_012149775v1   I 61 C 0
s otoGar3.GL873550           319776 28 +  18854210 CCCCACTGTATTCCATCGCCTCCTCCCC-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26347043 13 +  26524999 ------TGTGCCCCGTTGA----------
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            36604 24 +     53444 ---CACCATGCTTCCTGAGCTCCCCCA--
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               365975 193 + 123392446 I
e mm10.chr17               58102128 1069 -  94987271 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e calJac3.chr4             30472557 2189 + 171630274 I

a score=423896.000000
s hg38.chr6_GL000254v2_alt  1490022 40 +   4827813 GTGGGTGCCCCCCTCACTCCCAGTCTGACAAGCAGGTGTG
s panTro5.chr6             30359450 40 + 175400573 GTGGGTGCCCCCCTCACTCCCAGTCTGACAAGCAGGTGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593793 40 + 173848474 GTGGGTGCCCCCCTCACTCCCAGTCTGACAAGCAGGTGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300881 40 +   2037526 GTGGGTGCCCCCCTCACTCCCAGTCTGACAAGCAGGTGTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966847 40 + 122973662 GTGGGTGCCCCCCTCACTCCCAGTCTGACAAGCAGGTGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845857 36 + 172585720 ----GTGCCCCCCTCACTCCCAGTCTGACAAGCGGGTGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135344 36 - 170955103 ----GTGCCCCCCTCACTCCCAGTCTGACAAGCGGGTGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384567 36 +   1495729 ----GTGCCCCCCTCACTCCCAGTCTGACAAGCGGGTGTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486277 36 -    863181 ----GTGCCCCCCTCACTCCCAGTCTGACAAGCGGGTGTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634706 36 -  71996105 ----GTGCCCCCCTCACTCCCAGTCTGACAAGCGGGTGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364812 36 -    735854 ----GTGCCCCCCTCACTCCCAGTCTGACAAGCGGGTGTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     273246 40 -   1829203 GTGGGTGCCCCCCTCACTCCCAGTCTGACAAGCGGGTGTG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           280088 38 +    515838 GGGGTTGCCCCCCTCACTCCCAGTCTGACAAGCAG--GTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     909290 38 -   1771730 GGGGTTGCCCCCCTCAGTCCCAGTCTGACAAGCAG--GCG
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               366168 38 + 123392446 GTGGGTGCCACCCTCA--CCCCATCTGACAAGCAGGTGTG
i micMur3.chr6             I 193 C 0
s proCoq1.NW_012149775v1     175495 40 -   1411461 GTGGGTGCCACCCTCAGCCCCGGTCTGACAAGCAGGTGTG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           319804 39 +  18854210 ATGGGCGCCACCCTCA-CCCCAATCTGACAAGCAGGTGTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26347056 35 +  26524999 ----ACGCCACCCCCACCCCCAGGCTGAC-AGAATGTGTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            36628 27 +     53444 ----GCGTC--------TGCCAGTCTGGTAACCAG-CGTG
i dasNov3.JH567297         C 0 C 0
e mm10.chr17               58102128 1069 -  94987271 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e calJac3.chr4             30472557 2189 + 171630274 I

a score=1598103.000000
s hg38.chr6_GL000254v2_alt  1490062 116 +   4827813 TCTGTCTCTTTAGGAACGACTCAATCGCCGGAGCAGGAAGCTCAGAAAGGACATTGCAGAACTTCAGCGGCTCAAGGCTCAGCAGGAGAAGAAACTGCAGGCTCTGCAGGTGGGTT
s panTro5.chr6             30359490 116 + 175400573 TCTGTCTCTTTAGGAACGACTCAATCGCCGGAGCAGGAAGCTCAGAAAGGACATTGCAGAACTTCAGCGGCTCAAGGCTCAGCAGGAGAAGAAACTGCAGGCTCTGCAGGTGGGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593833 116 + 173848474 TCTGTCTCTTTAGGAACGACTCAATCGCCGGAGCAGGAAGCTCAGAAAGGACATTGCAGAACTTCAGCGGCTCAAGGCTCAGCAGGAGAAGAAACTGCAGGCTCTGCAGGTGGGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     300921 116 +   2037526 TCTGTCTCTTTAGGAACGACTCAATCGCCGGAGCAGGAAGCTCAGAAAGGACATTGCAGAACTTCAGCGGCTCAAGGCTCAGCAGGAGAAGAAACTGCAGGCTCTGCAGGTGGGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74966887 116 + 122973662 TCTGTCTCTTTAGGAACGACTCAATCGCCGGAGCAGGAAGCTCAGAAAGGACATTGCAGAACTTCAGCGGCTCAAGGCTCAGCAGGAGAAGAAACTGCAGGCTCTGCAGGTGGGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30845893 116 + 172585720 TCTGTCTCTTTAGGAACGACTCAACCGCCGGAGCAGGAAGCTCAGAAAGGACATTGCGGAACTTCAGCGACTCAAGGCTCAAGAGGAGAAGAAACTGCAGGCTCTGCAGGTGGGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135380 116 - 170955103 TCTGTCTCTTTAGGAACGACTCAACCGCCGGAGCAGGAAGCTCAGAAAGGACATTGCGGAACTTCAGCGACTCAAGGCTCAGGAGGAGAAGAAACTGCAGGCTCTGCAGGTGGGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384603 116 +   1495729 TCTGTCTCTTTAGGAACGACTCAACCGCCGGAGCAGGAAGCTCAGAAAGGACATTGCGGAACTTCAGCGACTCAAGGCTCAGGAGGAGAAGAAACTGCAGGCTCTGCAGGTGGGTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486313 116 -    863181 TCTGTCTTTTTAGGAACGACTCAACCGCCGGAGCAGGAAGCTCAGAAAGGACATTGCAGAACTTCAGCGACTCAAGGCTCAGGAGGAAAACATACTGCAAGCTCTGCAGGTGGGTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634742 116 -  71996105 TCTGTGTCTTTAGGAACGACTCAACCGCCGGAGCAGGAAGCTCAGAAAGGACATTGTGGAACTTCAGCGACTCACGGCTCAGGAGGAGAAGAAACTGCAGGCTCTGCAGGTGGGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364848 116 -    735854 TCTGTCTCTTTAGGAACGACTCAACCGCCGGAGCAGGAAGCTCAGAAAGGACATTGCAGAACTTCAGCGACTCAAGGCTCAGGAGGAAAACATACTGCAAGCTCTGCAGGTGGGTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     273286 116 -   1829203 TCTGTCTCTTTAGGAACGACTCAACCGCCGGAGCAGGAAGCTCAGAAAGGACATTGCGGAACTTCAGCGACTCAAGGTTCAGGAGGAAAAGAAACTGCAGGCTCTGCAGGTGAGTC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           280126 116 +    515838 TCTGTCTCTTTAGGAACGACTCAACCGCCGGAGCAGGAAGCTCAGAAAAGACATCGCTGAACTTCAGCGGCTCAAGGATCAGGAGGAGGAGAAACTGCAGGCTCCGCTGGTGGGTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     909328 116 -   1771730 TCTCTCTCTTTAGGAACGACTCAACCGCCGGAGCAGGAAGCTCAAAAAAGACATCGCAGAACTTCAGCGGCTCAAGGCTCAGGAGGAGGAGAAACTGCAGACTCTGCAGGTGGGTT
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               366206 113 + 123392446 CCTGTGTCTCCAGGAGCCACTCAACCACCGGAGCAGGAAGCTCAGAAAGGACATTGCAGAACGACATCAGCTCAAGGCTC---AGGAGGAAAAACTGCAGGCTCTGCAGGTGGGTT
i micMur3.chr6             C 0 I 581
s proCoq1.NW_012149775v1     175535 116 -   1411461 CCCGTGTCTTTAGGAGCGACTCAGCCACCGGGGCAGGAAGCTCAGAAAGGACATGGCAGAGCTTTGTGGGCCCAAGGCTCAGGAGGAGGAGAAACTGCAGGCCCTGCAGGTGGGTT
i proCoq1.NW_012149775v1   C 0 I 322
s otoGar3.GL873550           319843 116 +  18854210 TCTGTGTCTTTAGGAACGACTCAACCGCCGGAGCAGGAAGCTCAGAAAGGACATTGGAGAACTTCATCGGCTCAAGGCTCAGGAGGAGGAGAAGCTGCAGGCTCTGCAGGTGGGTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58103197 116 -  94987271 TTTGTCTCTCTAGGAAAGACTCAACCGGAGAAGCAGGAAGCTCAGAAAGGACCTTGGGAACCTTCAACAGCTGAAGGCTCAGGAAAAGAAGATGCTGCAGGCTCTGCAGGTGGCTG
i mm10.chr17               I 1069 C 0
s canFam3.chr35            26347091 106 +  26524999 TACGTCTCTCTAGGAAAGGCTCAACC---------GGAAACTCAGAAGAGAGCTGAAGGAGCTTGGATGGCTCAGGGCACAGGAGGAGGAGAAGCTGCAGGTGTTGCAGGTGGAT-
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            36655  96 +     53444 TCTGTGTC--CAGGAACGCCTCACCCGCCGGAGCAAGAAGCTCAGGAAGGA------------------GCTCAGGGCTCAGGAGGAAGAGAAGCTGCAGGGTGCAGAGGTGGGTT
i dasNov3.JH567297         C 0 C 0
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e calJac3.chr4             30472557 2189 + 171630274 I

a score=399084.000000
s hg38.chr6_GL000254v2_alt  1490178 52 +   4827813 TTTCGGGTTCCTGGGAAGGACTCCCTGGAGTGTTCTCAGGAGCCCTTACTTA
s panTro5.chr6             30359606 52 + 175400573 TTCCAGGTTCCTGGGAAGGAATCCCTGGAGTGTTCTCAGGAGCCCTTACTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30593949 52 + 173848474 TTCCAGGTTCCTGGGAAGGAATCCCTGGAGTGTTCTCAGGAGCCCTTACTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301037 52 +   2037526 TTTCAGGTTCCTGGGAAGGACTCCCTGGAGTGTTCTCAGGAGCCCTTACTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967003 48 + 122973662 TTTCAGGTTCCTGGGAAGGACTCCCTGGAGTGTTCTCAGGGGCC----CTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30846009 52 + 172585720 TTTCGGGTTCCCGGGAAGAACTCCCTGGAGTGTTCTCAGGGGCCCTTACTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135496 52 - 170955103 TTTCGGGTTCCCGGGAAGAACTCCCTGGAGTGTTCTCAGGGGCCCTTACTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384719 52 +   1495729 TTTCGGGTTCCCGGGAAGAACTCCCTGGAGTGTTCTCAGGGGCCCTTACTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486429 52 -    863181 TTTCAGGTTCCCGGGAAGAACTCCCTGGAGTGTTCTCAGGGGCTCTTACTTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634858 52 -  71996105 TTTCAGGTTCCCGGGAAGAACTCCCTGGAGTGTTCTCAGGGGCCCTTACTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364964 52 -    735854 TTTCAGGTTCCCGGGAAGAACTCCCTGGAGTGTTCTCAGGGGCTCTTACTTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     273402 51 -   1829203 TTTCGGGTTCCCGAGAAGAACTCCCTCGAGTGTTCTCA-GGGCCCCTACTTA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           280242 50 +    515838 TTTCAGATTCCTGGGAAGAACGACCTGGAGTGTTCTCA-GGGCCCTTACTT-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     909444 52 -   1771730 TTTCAGATTCCTGGGAAGGACTACCTGGAGTGTTCTCAGGGGCCCTTACTTA
i cebCap1.NW_016107755v1   C 0 I 600
s otoGar3.GL873550           319959 49 +  18854210 TCTCGGCTTCCTGGGGAGGACCAGCTTGA--ATCCTCAGGGGCCCTTACTT-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58103313 25 -  94987271 -----------------------TCTGA---GTTCTGAAGGGCCTCTCCCT-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26347197 50 +  26524999 TTGCGGGTCCGGGGAAGGGCCGCCTTCGAGGGACCTCA-GGGCCCAGACTC-
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            36751 39 +     53444 ----GGGGTCCTGGGGTGGACACT---GAGGATGATTTGGGGCCCT------
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               366319 581 + 123392446 I
e proCoq1.NW_012149775v1     175651 322 -   1411461 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e calJac3.chr4             30472557 2189 + 171630274 I

a score=994553.000000
s hg38.chr6_GL000254v2_alt  1490230 132 +   4827813 ACTATTCTGGACATCTGTCTGTCCCTggagcagcct--gatgtgggcagatggtcgtggaggctgaaaacccgggtgttggccttggcgtcaaagtttgctggttgagtgacct-acgcaagttaagccctctga
s panTro5.chr6             30359658 132 + 175400573 ACTATTCTGGACATCTGTCTGTCCCTggagcagcct--gatgtgggcagatggtcatggaggctgaaaacctgggtgttggccttggcatcaaagtttgctggttgagtgacct-acgcaagttaagccctctga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594001 132 + 173848474 ACTATTCTGGACATCTGTCTGTTCCTggagcagcct--gatgtgggcagatggtcgtggaggctgaaaacctgggtgttggccttggcatcaaagtttgctggttgagtgacct-acgcaagttaagccctctga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301089 131 +   2037526 ACTATTCTGGACATCTGTCTGTCCCTggagcagcct--gatgtgggcagatggtcgtggaggctgaaaacctgggtgttgaccttggcgtcaaagtttgctggtt-agtgacct-atgcaagttaagccctctga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967051 132 + 122973662 GCTGTTCTGGACATCTGTCTGTCCCTGGAGCAGCCt--gctgtgggcagatggtcatggaggctgaaaacctgggtgttggccttggtgtcaaagtttgctggctgagtgacct-acgcaagttaagccctctga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30846061 132 + 172585720 ACTGTTCTGGACATCTGTCTGTCCCTGGAAAAGCCT--GGTGTGGGCAGATAGTCATGGAGGCTgaaaacctgggttttggcctcggtgtcaaagtttgctggctgagtgacct-acgcaagtcaagccctctga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135548 132 - 170955103 ACTGTTCTGGACATCTGTCTGTCCCTGGAAAAGCCT--GGTGTGGGCAGATAGTCGTGGAGGCTgaaaacctgggttttggcctcggtgtcaaagtttgctggctgagtgacct-atgcaagttaagccctctga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384771 132 +   1495729 ACTGTTCTGGACATCTGTCTGTCCCTGGAAAAGCCT--GGTGTGGGCAGATAGTCGTGGAGGCTgaaaacctgggttttggcctcggtgtcaaagtttgctggctgagtgacct-atgcaagttaagccctctga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486481 132 -    863181 ACTGTTCTGGACATCTGTCTGTCCCTGGAAAAGCCT--GGTGTGGGCAGATAGTCGTGGAGGCTgaaaacctgggttttggccttggtgtcaaagtttgctggctgagtgacct-acgcaagttaagccctctga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29634910 132 -  71996105 ACTGTTCTGGACATCTGTCTGTCCCTGGAAAAGCCT--GGTGTGGGCAGATAGTCGTGGAGGCTgaaaacctggattttggccttggtgtcaaagtttgctggctgagtgacct-acacaagttaagccctctga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     365016 132 -    735854 ACTGTTCTGGACATCTGTCTGTCCCTGGAAAAGCCT--GGTgtgggcagatagtcgtggaggctgaaaacctgggttttggccttggtgtcaaagtttgctggctgagtgacct-acgcaagttaagccctctga
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     273453 132 -   1829203 ACTGTTCTGGACATCTGTATGTCCTTGGAAAAGCCT--GATGTAGGCAGATAGTCATGGAGGCTgaaaacctgggtgttggccttggtgtcaaagtttgctggctgagtgacct-acacaagttaagccctctga
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           280292 125 +    515838 ACTGTTCTGCACATCTGTTTGTCCCTGGAGCAGCCT--GATGTGGGCAGATGGTCATGGAGGCTG-AACCCTGGGTGTTGGTCTTGGCATCAAGATTTGCTAAGTAAGTG-------GCAGGTTAAGCCCTCTGA
i saiBol1.JH378341         C 0 I 64
s otoGar3.GL873550           320008 125 +  18854210 CCTGTTCTGCACACC----TGTCCCTGGAGCAACCC--TATGTGTG-GGgggcttatgaaggctgaaaatctgg-tgtcggccttggcgtc-aggcttgctagctgagtgacttcgggcaagttaagccc-ctga
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58103338 121 -  94987271 --TGTCGTGGACAACTGTCT----TCAGAGCAGCCGCAGTTGTGGAACTGTGATCATGCAGGCTGAAAACCTTGGTTTGGGGCTTGGTTTTGAGATT-----GATTAGTGAACA---GAATGCGAAGCCTTCTGA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26347247 120 +  26524999 CCTACTCTGG-CCTCCGT-GGTCCCTGGAGGGGCCT--GATGCCTGT--GTGTTgggagagggt-----cccgagtgctgg-ctcagcctcagagtctactggct--gtgacct-gggccaagtcctccctctga
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            36790 122 +     53444 -CCATTCCCATTCTCATGCTGCCCCTGGAGCAACCC--AATG--GGTGGAAACTCCAAGAGGCAGGAGG-CTGGGCTCAGGGCTCAGC-TCAGAGTTTGCT-----AATGACCT-TGAGTAAGGAAGCCCACTCA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               366319 581 + 123392446 I
e proCoq1.NW_012149775v1     175651 322 -   1411461 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e cebCap1.NW_016107755v1     909496 600 -   1771730 I
e calJac3.chr4             30472557 2189 + 171630274 I

a score=761620.000000
s hg38.chr6_GL000254v2_alt  1490362 105 +   4827813 tctttatgtgacttacatgttaaatgagaaccagtcct----------gctctacctggatcacagtagggatcaaaggagaccagtgtctcgtcaactgaaaattactacacaa
s panTro5.chr6             30359790 105 + 175400573 tctttatgtgacttacatgttaaatgagaaccagtcct----------gctctacctggatcacagtaaggatcaaaggagaccagtgtctcatcaactgaaaactactacacaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594133 105 + 173848474 tctttatgtgacttacatgttaaatgagaaccagtcct----------gctctacctggatcacagtaaggatcaaaggagaccagtgtctcatcaactgaaaactactacacaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301220 103 +   2037526 tctttatgtgacttacatgttaaatgagaaccagtcct----------gctct-cctggatcacagtaaggatcaaaggagaCCAGTGTCTCGTCAATT-AAAATTACTACACAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967183 105 + 122973662 tctttatgtgacttacatgttaaatgagaaccagtcct----------gctctacctggatcaccgtaaggatcaaaggagatcagtgtctcgtcaattgaaaattactgcacaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30846193 105 + 172585720 tctttatgcgacttatatgttaaatgagaaccagtcct----------actctgcctggctcacagtaaggatcaaaggagaccagtgtctcgtcaattgaaaattactacacaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135680 105 - 170955103 tctttatgcgacttatatgttaaatgagaaccagtcct----------actctgcctggctcacagtaaggatcaaaggagaccagtgtctcgtcaattgaaaattactacacaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     384903 105 +   1495729 tctttatgcgacttatatgttaaatgagaaccagtcct----------actctgcctggctcacagtaaggatcaaaggagaccagtgtctcgtcaattgaaaattactacacaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486613 105 -    863181 tctttatgcgacttatatgttaaatgagaaccagtcct----------actctgcctggctcacagtaaggatcaaaggagaccagtgtctcgtcaattgaaaattactacacaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29635042 105 -  71996105 tctttatgcgacttatatgctaaatgagaaccaatcct----------actctgcctggctcacagtaaggatcaaaggagaCCAGGGTCTCGTCAATTGAAAATTACTACACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     365148 105 -    735854 tctttatgtgacttatatgttaaatgagaaccagtcct----------actctgcctggctcacagtaaggatcaaaggagaccagtgtctcgtcaattgaaaattactacacaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     273585 105 -   1829203 tctttatgcaacttatatgttaaatgagaaccagtcct----------actctgcctggctcacagtaaggatcaaaggagaccagtgtctcgtcaattgaaaattactacacaa
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           320133 112 +  18854210 tcttcatgtgacttacgtgttaactgaaaagcaatcctggtagagcccgctctacctcgctcacagtacggaccaaaggagacaaGCGCCTCACAAATTGAAAATTA---CACAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58103459  90 -  94987271 CCTCCATGCATTTTTTTTTCTTAAAGAAAAATA--CCT----------ATTCTCCCTGGTTCTCAGCGAGAATCAAAATAGAT------------AGTTCAAAATT-TTACAAAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26347367  82 +  26524999 tcttcacatggtttaaatatgagacgagagtcagtcct----------gctccaaacagctcacagtgatgattgaaggggat------------GGCTGAAAA-----------
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            36912 101 +     53444 TCTTCATGTGATTTGGATGGTAAATGAAAACCA--CCT----------GCTCTCCCTGGCT-ATGGTGGGAATCCAACAAGAG-AGTGGCTCGCCAATAGGTAACTGCTACCCAA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               366319 581 + 123392446 I
e proCoq1.NW_012149775v1     175651 322 -   1411461 I
e saiBol1.JH378341           280417  64 +    515838 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e cebCap1.NW_016107755v1     909496 600 -   1771730 I
e calJac3.chr4             30472557 2189 + 171630274 I

a score=15053.000000
s hg38.chr6_GL000254v2_alt  1490467 3 +   4827813 GCC
s panTro5.chr6             30359895 3 + 175400573 GCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594238 3 + 173848474 GCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301323 3 +   2037526 GCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967288 3 + 122973662 GCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30846298 3 + 172585720 GCA
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     385008 3 +   1495729 GCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486718 3 -    863181 GCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29635147 3 -  71996105 GCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     365253 3 -    735854 GCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     273690 3 -   1829203 GCA
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           320245 3 +  18854210 GCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58103549 3 -  94987271 GTC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26347449 2 +  26524999 -CC
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            37013 3 +     53444 GCT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               366319 581 + 123392446 I
e proCoq1.NW_012149775v1     175651 322 -   1411461 I
e saiBol1.JH378341           280417 64 +    515838 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e cebCap1.NW_016107755v1     909496 600 -   1771730 I
e calJac3.chr4             30472557 2189 + 171630274 I
e macFas5.chr4             30135785 0 - 170955103 C

a score=1643.000000
s hg38.chr6_GL000254v2_alt  1490470 1 +   4827813 A
s panTro5.chr6             30359898 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594241 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301326 1 +   2037526 G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967291 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     486721 1 -    863181 G
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     365256 1 -    735854 G
i manLeu1.NW_012107142v1   C 0 C 0
s otoGar3.GL873550           320248 1 +  18854210 A
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58103552 1 -  94987271 A
i mm10.chr17               C 0 C 0
s canFam3.chr35            26347451 1 +  26524999 A
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            37016 1 +     53444 G
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               366319 581 + 123392446 I
e proCoq1.NW_012149775v1     175651 322 -   1411461 I
e saiBol1.JH378341           280417 64 +    515838 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e cebCap1.NW_016107755v1     909496 600 -   1771730 I
e calJac3.chr4             30472557 2189 + 171630274 I
e colAng1.NW_012115577v1     273693 0 -   1829203 C
e chlSab2.chr17            29635150 0 -  71996105 C
e macNem1.NW_012012100v1     385011 0 +   1495729 C
e macFas5.chr4             30135785 0 - 170955103 C
e rheMac8.chr4             30846301 0 + 172585720 C

a score=11454.000000
s hg38.chr6_GL000254v2_alt  1490471 7 +   4827813 TAGGCCT
s panTro5.chr6             30359899 7 + 175400573 TAGGCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594242 7 + 173848474 TAGGCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301327 7 +   2037526 TAGGCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967292 7 + 122973662 TAGGCCT
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873550           320249 7 +  18854210 CGGCTCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58103553 7 -  94987271 CGAGACT
i mm10.chr17               C 0 I 1
s canFam3.chr35            26347452 7 +  26524999 TGGGCTC
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            37017 7 +     53444 TAGGTCC
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               366319 581 + 123392446 I
e proCoq1.NW_012149775v1     175651 322 -   1411461 I
e saiBol1.JH378341           280417 64 +    515838 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e cebCap1.NW_016107755v1     909496 600 -   1771730 I
e calJac3.chr4             30472557 2189 + 171630274 I
e colAng1.NW_012115577v1     273693 0 -   1829203 C
e manLeu1.NW_012107142v1     365257 0 -    735854 C
e chlSab2.chr17            29635150 0 -  71996105 C
e cerAty1.NW_012002535v1     486722 0 -    863181 C
e macNem1.NW_012012100v1     385011 0 +   1495729 C
e macFas5.chr4             30135785 0 - 170955103 C
e rheMac8.chr4             30846301 0 + 172585720 C

a score=2552.000000
s hg38.chr6_GL000254v2_alt  1490478 1 +   4827813 C
s panTro5.chr6             30359906 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594249 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301334 1 +   2037526 C
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967299 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378341           280481 1 +    515838 c
i saiBol1.JH378341         I 64 C 0
s mm10.chr17               58103561 1 -  94987271 C
i mm10.chr17               I 1 C 0
s canFam3.chr35            26347459 1 +  26524999 T
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            37024 1 +     53444 C
i dasNov3.JH567297         C 0 I 44
e micMur3.chr6               366319 581 + 123392446 I
e proCoq1.NW_012149775v1     175651 322 -   1411461 I
e otoGar3.GL873550           320256 0 +  18854210 C
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e cebCap1.NW_016107755v1     909496 600 -   1771730 I
e calJac3.chr4             30472557 2189 + 171630274 I
e colAng1.NW_012115577v1     273693 0 -   1829203 C
e manLeu1.NW_012107142v1     365257 0 -    735854 C
e chlSab2.chr17            29635150 0 -  71996105 C
e cerAty1.NW_012002535v1     486722 0 -    863181 C
e macNem1.NW_012012100v1     385011 0 +   1495729 C
e macFas5.chr4             30135785 0 - 170955103 C
e rheMac8.chr4             30846301 0 + 172585720 C

a score=10026.000000
s hg38.chr6_GL000254v2_alt  1490479 13 +   4827813 TGtttctttttat
s panTro5.chr6             30359907 13 + 175400573 TGtttctttttat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594250 13 + 173848474 TGtttctttttat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301335 13 +   2037526 TGtttctttttat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967300 12 + 122973662 TGtttcttcttt-
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378341           280482 13 +    515838 tgtttcattgaat
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           320256 13 +  18854210 CCTTTCTGTCTCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58103562 11 -  94987271 AATCTGTCCTT--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26347460 13 +  26524999 CGTCTCTGTCTGT
i canFam3.chr35            C 0 I 84
e micMur3.chr6               366319 581 + 123392446 I
e dasNov3.JH567297            37025 44 +     53444 I
e proCoq1.NW_012149775v1     175651 322 -   1411461 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e cebCap1.NW_016107755v1     909496 600 -   1771730 I
e calJac3.chr4             30472557 2189 + 171630274 I
e colAng1.NW_012115577v1     273693  0 -   1829203 C
e manLeu1.NW_012107142v1     365257  0 -    735854 C
e chlSab2.chr17            29635150  0 -  71996105 C
e cerAty1.NW_012002535v1     486722  0 -    863181 C
e macNem1.NW_012012100v1     385011  0 +   1495729 C
e macFas5.chr4             30135785  0 - 170955103 C
e rheMac8.chr4             30846301  0 + 172585720 C

a score=5682.000000
s hg38.chr6_GL000254v2_alt  1490492 19 +   4827813 tttattttatttttttttt
s panTro5.chr6             30359920 19 + 175400573 tttattttttttttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594263 17 + 173848474 ttta--ttattattttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301348 11 +   2037526 t--------tttttttttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967312 10 + 122973662 ---------tttttttttt
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378341           280495 18 +    515838 tggaaatc-actttttttt
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           320269 19 +  18854210 GAGAATATACCTTTCTTTT
i otoGar3.GL873550         C 0 I 856
e micMur3.chr6               366319 581 + 123392446 I
e mm10.chr17               58103573  0 -  94987271 C
e dasNov3.JH567297            37025 44 +     53444 I
e proCoq1.NW_012149775v1     175651 322 -   1411461 I
e canFam3.chr35            26347473 84 +  26524999 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e cebCap1.NW_016107755v1     909496 600 -   1771730 I
e calJac3.chr4             30472557 2189 + 171630274 I
e colAng1.NW_012115577v1     273693  0 -   1829203 C
e manLeu1.NW_012107142v1     365257  0 -    735854 C
e chlSab2.chr17            29635150  0 -  71996105 C
e cerAty1.NW_012002535v1     486722  0 -    863181 C
e macNem1.NW_012012100v1     385011  0 +   1495729 C
e macFas5.chr4             30135785  0 - 170955103 C
e rheMac8.chr4             30846301  0 + 172585720 C

a score=76246.000000
s hg38.chr6_GL000254v2_alt  1490511 70 +   4827813 gagatggagtctt--------gctctgtcgcccaggctggagtgcagtggcacgaactccgctcact---gcaagctccgc
s panTro5.chr6             30359939 70 + 175400573 gagatggagtctt--------gctctgttgcccaggctggagtgcagtagcacgaactccgctcact---gcaagctccgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594280 70 + 173848474 gagatggagtctt--------gctctgttgcccaggctggagtgcagtagcacgaactccgctcact---gcaagctccgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301359 70 +   2037526 gagacggagtctt--------gctctgtcgcccaggctggagtgcagtggcacgaactccgctcact---gcaagctccac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967322 70 + 122973662 gagacggagtctt--------actctgtcgcccgggctggagtgcagtggcacgatctcggctcact---gcaagctctgc
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378341           280513 78 +    515838 gagacagagtcttagagtctcgctctgtcacccaggctggagcacagtagtgtgatcttggctcact---gcaacctctgc
i saiBol1.JH378341         C 0 C 0
s mm10.chr17               58103573 42 -  94987271 GGCAATCACTCTT-----------CTATCCCCC-------------------------TCGCTCACTTGGGTGAGCTC---
i mm10.chr17               C 0 C 0
e micMur3.chr6               366319 581 + 123392446 I
e dasNov3.JH567297            37025 44 +     53444 I
e proCoq1.NW_012149775v1     175651 322 -   1411461 I
e canFam3.chr35            26347473 84 +  26524999 I
e otoGar3.GL873550           320288 856 +  18854210 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e cebCap1.NW_016107755v1     909496 600 -   1771730 I
e calJac3.chr4             30472557 2189 + 171630274 I
e colAng1.NW_012115577v1     273693  0 -   1829203 C
e manLeu1.NW_012107142v1     365257  0 -    735854 C
e chlSab2.chr17            29635150  0 -  71996105 C
e cerAty1.NW_012002535v1     486722  0 -    863181 C
e macNem1.NW_012012100v1     385011  0 +   1495729 C
e macFas5.chr4             30135785  0 - 170955103 C
e rheMac8.chr4             30846301  0 + 172585720 C

a score=101707.000000
s hg38.chr6_GL000254v2_alt  1490581 67 +   4827813 ctcccgggttcacgccattctcctgcctcagcctcccgagta-ctgggactacaggcacttgccacca
s panTro5.chr6             30360009 68 + 175400573 ctcctgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcacttgccacca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594350 68 + 173848474 ctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcacttgccacca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301429 68 +   2037526 ctcccgggttcacgccattcttctgcctcagcctcccgagtagctgggactacaggcacttgccacca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967392 68 + 122973662 ctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcacccgccacca
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30474746 66 + 171630274 ctcctgacttc--gtgatccacctgcctcaacctcccgaagtgctgggattacaggcgtgagccacca
i calJac3.chr4             I 2189 C 0
s saiBol1.JH378341           280591 68 +    515838 ctcctggattcaagcaattctcctgcctcagcctcctgagtagctgggactacaggcgcctgccaccg
i saiBol1.JH378341         C 0 C 0
s mm10.chr17               58103615 33 -  94987271 ------------------TCTCCTCACTTA--------------CAGGGCTGAAAGCA---GACATCA
i mm10.chr17               C 0 C 0
e micMur3.chr6               366319 581 + 123392446 I
e dasNov3.JH567297            37025 44 +     53444 I
e proCoq1.NW_012149775v1     175651 322 -   1411461 I
e canFam3.chr35            26347473 84 +  26524999 I
e otoGar3.GL873550           320288 856 +  18854210 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e cebCap1.NW_016107755v1     909496 600 -   1771730 I
e colAng1.NW_012115577v1     273693  0 -   1829203 C
e manLeu1.NW_012107142v1     365257  0 -    735854 C
e chlSab2.chr17            29635150  0 -  71996105 C
e cerAty1.NW_012002535v1     486722  0 -    863181 C
e macNem1.NW_012012100v1     385011  0 +   1495729 C
e macFas5.chr4             30135785  0 - 170955103 C
e rheMac8.chr4             30846301  0 + 172585720 C

a score=49498.000000
s hg38.chr6_GL000254v2_alt  1490648 53 +   4827813 cgccca-------------gctaa-ttttttctattttttagtagagatggggtttcaccatgttag
s panTro5.chr6             30360077 54 + 175400573 agccca-------------gctaatttttttctattttttagtaaagatggggtttcaccatgttag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594418 53 + 173848474 agccca-------------gctaa-ttttttctattttttagtaaagatggggtttcaccatgttag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301497 53 +   2037526 cgccca-------------gctaa-ttttttctattttttagtagagatggggtttcaccatgttag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967460 53 + 122973662 tgccca-------------gctaa-ttttttctattttttagtagagatggggtttcaccatgttag
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30474812 47 + 171630274 tgccaggccatctaagccctctga-tcttt-----------------atgtgattt--acatgttaa
i calJac3.chr4             C 0 I 82
s saiBol1.JH378341           280659 50 +    515838 cactg--------------cctga-tttttgt--atttttagtagaaatgaggtttcaccatcttgg
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6               366319 581 + 123392446 I
e mm10.chr17               58103648  0 -  94987271 C
e dasNov3.JH567297            37025 44 +     53444 I
e proCoq1.NW_012149775v1     175651 322 -   1411461 I
e canFam3.chr35            26347473 84 +  26524999 I
e otoGar3.GL873550           320288 856 +  18854210 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e cebCap1.NW_016107755v1     909496 600 -   1771730 I
e colAng1.NW_012115577v1     273693  0 -   1829203 C
e manLeu1.NW_012107142v1     365257  0 -    735854 C
e chlSab2.chr17            29635150  0 -  71996105 C
e cerAty1.NW_012002535v1     486722  0 -    863181 C
e macNem1.NW_012012100v1     385011  0 +   1495729 C
e macFas5.chr4             30135785  0 - 170955103 C
e rheMac8.chr4             30846301  0 + 172585720 C

a score=61925.000000
s hg38.chr6_GL000254v2_alt  1490701 51 +   4827813 ccaggatggtctcgatctcctgacctcgtgatccgcccgccttggcctccc
s panTro5.chr6             30360131 51 + 175400573 ccaggatggtctcgatctcctgacctcgtgatccgcccgccttggcctccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594471 51 + 173848474 ccaggatggtctcgatctcctgatctcgtgatccgcccgccttggcctccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301550 51 +   2037526 ccaggatggtctcgatctcctgacctcgtgatccgcccgccttggcctccc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967513 51 + 122973662 ccaggatggtctccatctcctgacctcgtgatccgcccacttttgcctccc
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378341           280709 51 +    515838 ccaggcttgtcttgaactcctgacttcgagatccacctgcctcgacctccc
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6               366319 581 + 123392446 I
e mm10.chr17               58103648  0 -  94987271 C
e dasNov3.JH567297            37025 44 +     53444 I
e proCoq1.NW_012149775v1     175651 322 -   1411461 I
e canFam3.chr35            26347473 84 +  26524999 I
e otoGar3.GL873550           320288 856 +  18854210 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e cebCap1.NW_016107755v1     909496 600 -   1771730 I
e calJac3.chr4             30474859 82 + 171630274 I
e colAng1.NW_012115577v1     273693  0 -   1829203 C
e manLeu1.NW_012107142v1     365257  0 -    735854 C
e chlSab2.chr17            29635150  0 -  71996105 C
e cerAty1.NW_012002535v1     486722  0 -    863181 C
e macNem1.NW_012012100v1     385011  0 +   1495729 C
e macFas5.chr4             30135785  0 - 170955103 C
e rheMac8.chr4             30846301  0 + 172585720 C

a score=54683.000000
s hg38.chr6_GL000254v2_alt  1490752 40 +   4827813 aaagtgctgggattacaggtgtgagccaccgtgcccggcc
s panTro5.chr6             30360182 40 + 175400573 aaagtgctgggattacaggtgtgagccaccgtgcccggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594522 40 + 173848474 aaagtgctgggattacaggtgtgagccaccgtgcccggcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301601 40 +   2037526 aaagtgctgggattacaggcatgagccaccgtgcctggcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967564 40 + 122973662 aaagtgctgggattacaggtgtcagccaccgtgcccggcc
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378341           280760 40 +    515838 aaagtgctgggattacaggtgtgagccaccatgccctgcc
i saiBol1.JH378341         C 0 C 0
s mm10.chr17               58103648 40 -  94987271 AAAGAGCATAGCTGAGTGGTGTGTGTGTGTGTGTTCCACT
i mm10.chr17               C 0 C 0
e micMur3.chr6               366319 581 + 123392446 I
e dasNov3.JH567297            37025 44 +     53444 I
e proCoq1.NW_012149775v1     175651 322 -   1411461 I
e canFam3.chr35            26347473 84 +  26524999 I
e otoGar3.GL873550           320288 856 +  18854210 I
e aotNan1.NW_018496901v1      91023 114 -    486031 I
e cebCap1.NW_016107755v1     909496 600 -   1771730 I
e calJac3.chr4             30474859 82 + 171630274 I
e colAng1.NW_012115577v1     273693  0 -   1829203 C
e manLeu1.NW_012107142v1     365257  0 -    735854 C
e chlSab2.chr17            29635150  0 -  71996105 C
e cerAty1.NW_012002535v1     486722  0 -    863181 C
e macNem1.NW_012012100v1     385011  0 +   1495729 C
e macFas5.chr4             30135785  0 - 170955103 C
e rheMac8.chr4             30846301  0 + 172585720 C

a score=4190.000000
s hg38.chr6_GL000254v2_alt  1490792 1 +   4827813 G
s panTro5.chr6             30360222 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594562 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301641 1 +   2037526 G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967604 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30135785 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s calJac3.chr4             30474941 1 + 171630274 G
i calJac3.chr4             I 82 C 0
s saiBol1.JH378341           280800 1 +    515838 a
i saiBol1.JH378341         C 0 I 117
s cebCap1.NW_016107755v1     910096 1 -   1771730 G
i cebCap1.NW_016107755v1   I 600 C 0
s aotNan1.NW_018496901v1      91137 1 -    486031 G
i aotNan1.NW_018496901v1   I 114 C 0
s mm10.chr17               58103688 1 -  94987271 G
i mm10.chr17               C 0 C 0
e micMur3.chr6               366319 581 + 123392446 I
e dasNov3.JH567297            37025 44 +     53444 I
e proCoq1.NW_012149775v1     175651 322 -   1411461 I
e canFam3.chr35            26347473 84 +  26524999 I
e otoGar3.GL873550           320288 856 +  18854210 I
e colAng1.NW_012115577v1     273693 0 -   1829203 C
e manLeu1.NW_012107142v1     365257 0 -    735854 C
e chlSab2.chr17            29635150 0 -  71996105 C
e cerAty1.NW_012002535v1     486722 0 -    863181 C
e macNem1.NW_012012100v1     385011 0 +   1495729 C
e rheMac8.chr4             30846301 0 + 172585720 C

a score=2072.000000
s hg38.chr6_GL000254v2_alt  1490793 2 +   4827813 CC-
s panTro5.chr6             30360223 2 + 175400573 CC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594563 2 + 173848474 CC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301642 2 +   2037526 CC-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967605 2 + 122973662 CC-
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30135786 2 - 170955103 CA-
i macFas5.chr4             C 0 C 0
s calJac3.chr4             30474942 2 + 171630274 CC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           280918 2 +    515838 CC-
i saiBol1.JH378341         I 117 C 0
s cebCap1.NW_016107755v1     910097 2 -   1771730 CC-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      91138 2 -    486031 CC-
i aotNan1.NW_018496901v1   C 0 C 0
s mm10.chr17               58103689 2 -  94987271 -TG
i mm10.chr17               C 0 C 0
e micMur3.chr6               366319 581 + 123392446 I
e dasNov3.JH567297            37025 44 +     53444 I
e proCoq1.NW_012149775v1     175651 322 -   1411461 I
e canFam3.chr35            26347473 84 +  26524999 I
e otoGar3.GL873550           320288 856 +  18854210 I
e colAng1.NW_012115577v1     273693 0 -   1829203 C
e manLeu1.NW_012107142v1     365257 0 -    735854 C
e chlSab2.chr17            29635150 0 -  71996105 C
e cerAty1.NW_012002535v1     486722 0 -    863181 C
e macNem1.NW_012012100v1     385011 0 +   1495729 C
e rheMac8.chr4             30846301 0 + 172585720 C

a score=7847.000000
s hg38.chr6_GL000254v2_alt  1490795 1 +   4827813 A
s panTro5.chr6             30360225 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594565 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301644 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967607 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30846301 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135788 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     385011 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29635150 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     273693 1 -   1829203 A
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30474944 1 + 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           280920 1 +    515838 A
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     910099 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      91140 1 -    486031 A
i aotNan1.NW_018496901v1   C 0 C 0
s mm10.chr17               58103691 1 -  94987271 G
i mm10.chr17               C 0 C 0
e micMur3.chr6               366319 581 + 123392446 I
e dasNov3.JH567297            37025 44 +     53444 I
e proCoq1.NW_012149775v1     175651 322 -   1411461 I
e canFam3.chr35            26347473 84 +  26524999 I
e otoGar3.GL873550           320288 856 +  18854210 I
e manLeu1.NW_012107142v1     365257 0 -    735854 C
e cerAty1.NW_012002535v1     486722 0 -    863181 C

a score=108088.000000
s hg38.chr6_GL000254v2_alt  1490796 10 +   4827813 TAGGCCTCCA
s panTro5.chr6             30360226 10 + 175400573 TAGGCCTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594566 10 + 173848474 TAGGCCTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301645 10 +   2037526 TAGGCCTCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967608 10 + 122973662 TAGACCTCCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30846302 10 + 172585720 TAGGCCTCCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135789 10 - 170955103 TAGGCCTCCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     385012 10 +   1495729 TAGGCCTCCG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486722 10 -    863181 TAGGCCTCCG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29635151 10 -  71996105 TAGGCCTCCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     365257 10 -    735854 TAGGCCTCCG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     273694 10 -   1829203 TAGGCCTCCG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30474945 10 + 171630274 TAGGCCTCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           280921 10 +    515838 TAGGCCTCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     910100 10 -   1771730 TAGGCCCCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      91141 10 -    486031 TAGGCCTCTG
i aotNan1.NW_018496901v1   C 0 C 0
s mm10.chr17               58103692 10 -  94987271 CAGGACTCCA
i mm10.chr17               C 0 C 0
e micMur3.chr6               366319 581 + 123392446 I
e dasNov3.JH567297            37025 44 +     53444 I
e proCoq1.NW_012149775v1     175651 322 -   1411461 I
e canFam3.chr35            26347473 84 +  26524999 I
e otoGar3.GL873550           320288 856 +  18854210 I

a score=337660.000000
s hg38.chr6_GL000254v2_alt  1490806 33 +   4827813 TTTCTGTCTCTGACAGTCTACCTTTCTATTCCT
s panTro5.chr6             30360236 33 + 175400573 TTTCTGTCTCTGACAGTCTACCTTTCTATTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594576 33 + 173848474 TTTCTGTCTCTGACAGTCTACCTTTCTATTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301655 33 +   2037526 TTTCTGTCTCTGACAGTCTACCTTTCTATTCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967618 33 + 122973662 TTTCTGTCTCTGACAGTCTACCTTTCTATTCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30846312 33 + 172585720 TTTCTGTCTCTGACAGTCTCCCTTTCTATTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135799 33 - 170955103 TTTCTGTCTCTGACAGTCTCCCTTTCTATTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     385022 33 +   1495729 TTTCTGTCTCTGACAGTCTCCCTTTCTATTCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486732 33 -    863181 TTTCTGTCTCTGACAGTCTACCTTTCTATTCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29635161 33 -  71996105 TTTCTGTCTCTGACAATCTACCTTTCTATTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     365267 33 -    735854 TTTCTGTCTCTGACAGTCTACCTTTCTATTCCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     273704 33 -   1829203 TTTCTGTCTCTGACAGTCTACCTTTCTATTCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30474955 32 + 171630274 TTTCTGTCTCTGACAGTCTACCTTTCCATCCT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           280931 32 +    515838 TTTCTGTCTCTGACAGTCTACCTTTCCATCCC-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     910110 32 -   1771730 TTTCTGTCTCTGACAGTCTACCTTTCCATCCT-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      91151 32 -    486031 TTTCTGTCTCTGACAGTCTACCTTTGCATCCT-
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     175973 33 -   1411461 TTTCTGTCTGTGACAGTCTACCTTTCTTTTCCT
i proCoq1.NW_012149775v1   I 322 I 290
s mm10.chr17               58103702  2 -  94987271 ---------------------------AT----
i mm10.chr17               C 0 C 0
e micMur3.chr6               366319 581 + 123392446 I
e dasNov3.JH567297            37025 44 +     53444 I
e canFam3.chr35            26347473 84 +  26524999 I
e otoGar3.GL873550           320288 856 +  18854210 I

a score=54372.000000
s hg38.chr6_GL000254v2_alt  1490839 7 +   4827813 CTTGGTC
s panTro5.chr6             30360269 7 + 175400573 CTTGGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594609 7 + 173848474 CTTGGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301688 7 +   2037526 CTTGGTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967651 7 + 122973662 CTTGGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30846345 7 + 172585720 CTTGGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135832 7 - 170955103 CTTGGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     385055 7 +   1495729 CTTGGTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486765 7 -    863181 CTTGGTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29635194 7 -  71996105 CTTGGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     365300 7 -    735854 CTTGGTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     273737 7 -   1829203 CTTGGTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30474987 3 + 171630274 ----GTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           280963 3 +    515838 ----GTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     910142 3 -   1771730 ----GTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      91183 3 -    486031 ----GTC
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               366319 581 + 123392446 I
e mm10.chr17               58103704 0 -  94987271 C
e dasNov3.JH567297            37025 44 +     53444 I
e proCoq1.NW_012149775v1     176006 290 -   1411461 I
e canFam3.chr35            26347473 84 +  26524999 I
e otoGar3.GL873550           320288 856 +  18854210 I

a score=1090702.000000
s hg38.chr6_GL000254v2_alt  1490846 102 +   4827813 ACATGGCATCTGTAGATATTC---AGAGAGTGAGGTGGAA-AG-GTGAGGTGTCCCTGCCTTTATGAGAATCAAAGCTGCTTCTGCAATACCTGTGACACACAGAGG
s panTro5.chr6             30360276 102 + 175400573 ACATGGCATCTGTAGATATTC---AAAGAGTGAGGTGGAA-TG-GTGAGGTGTCCCTGCCTTTATGAGAATCAAAGCTGCTTCTGCAATACCTGTGACACACAGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594616 102 + 173848474 ACATGGCATCTGTAGATATTC---AAAGAGTGAGGTGGAA-TG-GTGAGGTGTCCCTGCCTTTATGAGAATCAAAGCTGCTTCTGCAATACCTGTGACACACAGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301695 102 +   2037526 ACATGACATCTGTAGATATTC---AGAGAGTGAGGTGGAA-AG-GTGAGGTGTCCCTGCCTTTATGAGAATCAAAGCTGCTTCTGCAATACCTGTGACACACAGAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967658 102 + 122973662 ACATGGCATCTGTAGATATTC---AGACAGTGAGGTGGAA-AG-GTGAGGTGTCCCTGCCTTTATGAGAATCACAGCTGCTTCTGCAATACCTGTGACACACAGAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30846352 102 + 172585720 ACGTGGCATCTGTAGATATTC---AGAGAGTGAGGTGGAA-AG-GGGAGGTGTCCCTGCCTTTATGAGAATCACAGCTGCTTCTGCAATACCTGTGACACACAGAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135839 102 - 170955103 ACGTGGCATCTGTAGATATTC---AGAGAGTGAGGTGGAA-AG-GGGAGGTGTCCCTGCCTTTATGAGAATCACAGCTGCTTCTGCAATACCTGTGACACACAGAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     385062 102 +   1495729 ACGTGGCATCTGTAGATATTC---AGAGAGTGAGGTGGAA-AG-GGGAGGTGTCCCTGCCTTTATGAGAATTACAGCTGCTTCTGCAATACCTGTGACACACAGAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486772 102 -    863181 ACATGGCATCTGTAGATATTT---AGAGAGTGAGGTGGAA-AG-GGGAGGTGTCCCTGCCTTTATGAGAATCACAGCTGCTTCTGCAATACCTGTGACACACAGAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29635201 102 -  71996105 ACGTGGCATCTGTAGATATTC---AGAGAGTGAGGTGGAA-AG-GGGAGGTGTCCCTGCTTTTATGAGAATCACAGCTGCTTCTGCAATACCTGTGACACACAGAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     365307 102 -    735854 ACATGGCATCTGTAGATATTT---AGAGAGTGAGGTGGAA-AG-GGGAGGTGTCCCTGCTTTTATGAGAATCACAGCTGCTTCTGCAATACCTGTGACACACAGAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     273744 102 -   1829203 ACGTGGCATCTGTAGATATTC---AGAGAGTGAGGTGGAA-AG-GGGAGGTGTCCCTGCCTTTGTGAGAATCACAGCTGCTTCTGCAATACCTGTGACACACAGAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30474990 100 + 171630274 ACATGGCATCCGTAGATGTTC-----AGTGTGAGGCAGAA-AG-GGGAGGTGTCCCTGCCTTTATGAGAACCATAGTTGCCTCTGCAGTACCTGTGACACATAGCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           280966 100 +    515838 ACATGGCATCTGTAGATGTTC-----AGTGTGAAGCAGAA-AG-GGGAGATGTCCCTACCTTTATGAGATCCACAGCTGCCTCTGCAGTACCTGTGACACACAGCGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     910145 101 -   1771730 ACATGGCATCTGTAGATGTTC-----AGTGTGAGGCAGAAGGG-GGGAGGTGTCCCTGACTTTATGAGAACCACAGCTGCCTCTGCAGTACCTGTGACACACAGTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      91186 100 -    486031 ACATGGCATCTGTAGATGTTC-----AGTGTGAGGCAGAA-AG-GGGAGGTGTCCCTGCCTTTACGAGAACCACAGCTGCCTCTGCAGTACCTGTGACACACAGCAG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           321144 104 +  18854210 ACATGGCATCTGTAGACATTCACAAGAGTGTGAGGTGGGA-AG-GAGAGCTGTCTCTGCCTTTGTGAGGATCGCAGCTGCCTCTGCAACACCTAC-ACATGGAGAGG
i otoGar3.GL873550         I 856 C 0
s mm10.chr17               58103704  82 -  94987271 -------ATCTGCAGATGTGCTCAGAACTGTGAGGTGGGA-AGTGGGAGGAG-------CTTTGTGAAGA--------GCTCCTGAAGTACA-ATGGC-TGGTGAGG
i mm10.chr17               C 0 C 0
e micMur3.chr6               366319 581 + 123392446 I
e dasNov3.JH567297            37025  44 +     53444 I
e proCoq1.NW_012149775v1     176006 290 -   1411461 I
e canFam3.chr35            26347473  84 +  26524999 I

a score=573982.000000
s hg38.chr6_GL000254v2_alt  1490948 56 +   4827813 CAACACCATGAGGGCAAGAGGAT-TGAGGAATCAGCA-TTCCTGCTCAG-ACATTCAGA
s panTro5.chr6             30360378 56 + 175400573 CAACACCATGAGGGCAAGAGGAT-TGAGGAATCAGCA-TTCCTGCTCAG-ACATTCAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594718 56 + 173848474 CAACACCATGAGGGCAAGAGGAT-TGAGGAATCAGCA-TTCCTGCTCAG-ACATTCAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301797 55 +   2037526 CAACACCATGA-GGCAAGAGGAT-TGAGGAATCAGCA-TTCCTGCTCAG-ACTTTCAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967760 56 + 122973662 CAACACCATGACGGCAAGAGGAT-TGAGGAATCAGCA-TTCCTGCTCAG-ACATTCAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30846454 56 + 172585720 CAGCATCATGAGGGGAAGAGGAT-TGAGGAATCCCCT-TTCCTGCTCAG-ACATTCAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135941 56 - 170955103 CAGCATCATGAGGGGAAGAGGAT-TGAGGAATCCCCT-TTCCTGCTCAG-ACATTCAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     385164 56 +   1495729 CAGCATCATGAGGGGAAGAGGAC-TGAGGAATCCCCT-TTCCTGCTCAG-ACATTCAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486874 56 -    863181 CAACATCATGAGGGGAAGAGGAT-TGAGGAATCCCCT-TTCCTGCTCAG-ACATTCAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29635303 56 -  71996105 CAACATCATGAGGGGAAGAGGAT-TGAGGAATCCCCT-TTCCTGCTCAG-ACATTCAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     365409 56 -    735854 CAACATCATGAGGGGAAGAGGAT-TGAGGAATCCCCT-TTCCTGCTCAG-ACATTCAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     273846 56 -   1829203 CAACACCATGAGGGGAAGAGGAT-TGAGGAATCCCCT-TTCCTGCTCAG-ACATTCAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30475090 56 + 171630274 AAACACTATAAGGGGAAGAGGTT-TGAGGAATCAGCA-TTCCTGCTCAG-ATACTCAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           281066 56 +    515838 AAACACTATAAGGGGAAGAGGGT-TGAGGAATCAGCA-TTCCTGCTCAG-ATACTCAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     910246 56 -   1771730 AAACACTATAAGGGGAAGAGGGT-TGAGGAATCAGCA-TTCCTGCTCAG-ATACTCAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      91286 57 -    486031 AAACACTCTAAGGGGAAGAGGGT-TGAGGAATCAGCATTTCCTGCTCAG-ATACTCAGA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           321248 55 +  18854210 CAGCCCCATGA-GGGAGGGGGAC-CGAGGACTCTGCA-CCCACACTCAG-ATTTTCAGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58103786 54 -  94987271 CAAGGCTGTGT-AGGAAGAGGAG-TGGAGAA-CAATA-TTCCCACCTAG-CTATTCAGT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26347557 58 +  26524999 CAAGAGCGTGGGGGTGAGGGAGCATGGGGCACCAGCA-TTCTCGCTGAGAACACTTGGC
i canFam3.chr35            I 84 C 0
e micMur3.chr6               366319 581 + 123392446 I
e dasNov3.JH567297            37025 44 +     53444 I
e proCoq1.NW_012149775v1     176006 290 -   1411461 I

a score=75325.000000
s hg38.chr6_GL000254v2_alt  1491004 10 +   4827813 GACTGTGAAG
s panTro5.chr6             30360434 10 + 175400573 GACTGTGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594774 10 + 173848474 GACTGTGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301852 10 +   2037526 GACTGTGAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967816 10 + 122973662 GACTGTGAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30846510 10 + 172585720 GACTGTGAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30135997 10 - 170955103 GACTGTGAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     385220 10 +   1495729 GACTGTGAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486930 10 -    863181 GACTGTGAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29635359 10 -  71996105 GGCTGTGAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     365465 10 -    735854 GACTGTGAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     273902 10 -   1829203 GACTGTGAAT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           281122  8 +    515838 --CTGTGAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     910302 10 -   1771730 GACTGTGAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      91343 10 -    486031 GACTGTGAAG
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               366900 10 + 123392446 GACTGCGACG
i micMur3.chr6             I 581 C 0
s otoGar3.GL873550           321303 10 +  18854210 GACTGGCAAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58103840  8 -  94987271 -GCTTAGAG-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26347615  8 +  26524999 -GGTCCAAT-
i canFam3.chr35            C 0 C 0
e dasNov3.JH567297            37025 44 +     53444 I
e proCoq1.NW_012149775v1     176006 290 -   1411461 I
e calJac3.chr4             30475146  0 + 171630274 C

a score=1867036.000000
s hg38.chr6_GL000254v2_alt  1491014 120 +   4827813 GGCCAGGAGGGAGCCACCTGACACTGAGTCTTAGGG-AGCCCCT--TTCCTGTAGTTTCAGGTAGACCACGGGAACCACAGGCTGGAGGCTGGGCCGGAGAGCCAGCACCAAACCAGGGAACA
s panTro5.chr6             30360444 120 + 175400573 GGCCAGGAGGGAGCCACCTGACACTGAGTCTTAGGG-AGCCCCT--TTCCTGTAGTTTCAGGTAGACCATGGGAACCACAGGCTGGAGGCTGGGCTGGAGAGCCAGCACCAAACCAGGGAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594784 120 + 173848474 GGCCAGGAGGGAGCCACCTGACACTGAGTCTTAGGG-AGCCCCT--TTCCTGTAGTTTCAGGTAGACCATGGGAACCACAGGCTGGAGGCTGGGCTGGAGAGCCAGCACCAAACCAGGGAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301862 120 +   2037526 GGCCAGGAGGGAGCCACCTGACACTGAGTCTTAGGG-AGCCCCT--TTCCTGTAGTTTCAGGTAGACCATGGGAACCACAGGCTGGAGGCTGGGCTGGAGAGCCAGCACCAAACCAGGGAACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967826 120 + 122973662 GGCCAGGAGGGAGCCACCTGACACTAAGTCTTAGGG-AGCCCCT--TTCCTGTAGTTTCAGGTAGACCATGAGAACCACAGGCTGGAGGCTGGGCTGGAGAGCCAGCACCAAACCAGGGAACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30846520 120 + 172585720 GGCCAGGAGGGAGCCACCTGACACTGAGTCTTAGGG-AGCCCCT--TTCCTGTAGTTTCAGGTAGACCATGGGAACCACAGGCTGGAGGCTGGGCTGGAGAGCCAGCACCAAACCAGGGAACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30136007 120 - 170955103 GGCCAGGAGGGAGCCACCTGACACTGAGTCTTAGGG-AACCCCT--TTCCTGTAGTTTCAGGTAGACCATGGGAACCACAGGCTGGAGGCTGGGCTGGAGAGCCAGCACCAAACCAGGGAACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     385230 120 +   1495729 GGCCAGGAGGGAGCCACCTGACACTGAGTCTTAGGG-AACCCCT--TTCCTGTAGTTTCAGGTAGACCATGGGAACCACAGGCTGAAGGCTGGGCTGGAGAGCCAGCACCAAACCAGGGAACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     486940 120 -    863181 GGCCAGGAGGGAGCCACCTGACACTGAGTCTTAGGG-AACCCCT--TTCCTGTAGTTTCAGATAGACCATGGGAACCACAGGCTGGAGGCTGGGCTGGAGAGCCAGCACCAAACCAGGGAACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29635369 120 -  71996105 GGCCAGGAGGGAGCCACCTGACACTGAGTCTTAGGG-AGCCCCT--TTCCTGTAGTTTCAGGTAGACCATGGGAACCACAGGCTGGAGGCTGGGCTGGAGAGCCAGCACCAAACCAGGGAACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     365475 120 -    735854 GGCCAGGAGGGAGCCACCTGACACTGAGTCTTAGGG-AGCCCCT--TTCCTGTAGTTTCAGATAGACCATGGGAACCACAGGCTGGAGGCTGGGCTGGAGAGCCAGCACCAAACCAGGGAACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     273912 120 -   1829203 GGCCAGGAGGGAGCCACCTGACACTGAGTCTTAGGG-AGCCCCT--TTCCTGTAGTTTCAGGTAGACCATGGGAACCACAGGCTGGAGGCTGGGCTGGAGAGCCAGCACCAAACCAGGGAACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30475146 108 + 171630274 GACTGTGAGGGAGCCACCTGACATTGAGTCTTAGGG-AGCCCCT--TTCCTGTAGTTTCAGGTAGACTATGGGAACCACAG------------GCTGGAGAGCCAGCACCAAACCAGGGAACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           281130 120 +    515838 GGCCAGGAGGGAGCCACCTGACATTGAGTCTTAGGG-AGCCCCT--TTCCTGTAGTTTCAGGTAGACCATCAGAACCACAGGCTGCAGGCTAAGCTGGAGAGCCAGCACCAAACTAGGGAACA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     910312 120 -   1771730 GGCCAGGAGGGAGCCACCTGACATCGAGTCTTAGGG-AGCCCCT--TTCCTGCAGTTTCAGGTAGACTATGGGAACCACAGGCTGGAGGCTGAGCTGGAGAGCCAGCACCAAACTAGGGAACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      91353 120 -    486031 GGCCAGGAGGGAGCCACCTGACACGGAGTCTTAGGG-AGCCCCT--TTCCTGTAGTTTCAGGTAGACTACGGGAACCACAGGCTGGAGGCTGAGCTGGAGAGGCAGCACCAAACTAGGGAACA
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               366910 117 + 123392446 GGCCAGGAGGGAGCCGTCGGCCCCTGAGTCTTAGGG----CCCC--CCTCTGTAGTTCCAGGTGGACCACGGGGACCGCAGGCTGGAGACTGAGCTGGAGAGACTGCACTAAACCAGGGGACG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     176296 119 -   1411461 GGCCAGGAGGGAGCCATCGGCCACTGAGTCTTAGGG----CTCCTTTCTCTGTAGTTCCAGGTAGACCGCGGGAACCACAAGCTGGAGGCTGAGCTGGAGAGCCAGCACCAAACCAGGGGACG
i proCoq1.NW_012149775v1   I 290 C 0
s otoGar3.GL873550           321313 114 +  18854210 GACCAGGAGGCAGCCATCTGACACTGAATCTTC-------CCCC--TTTCTATTGTTTCAGGTAGACCATGGGAACCACAGGCTGGAGGCTGAGCTGAAGGGCGAGCACCAACTCAGCAGACA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58103848 121 -  94987271 AGCCAGGAGAGAGCCCTCTATTATTGAATCTCAGGGTAGCTCCT--CTTCTCTGCTTTCAGGTGGATTGTGAGTGTCACAGGCTAAGAACTGACCTGCAGAACCAAGACCAAACCAAGGAACA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26347623 108 +  26524999 GGCCAGGAGGAAACCA--------TGAGTCTCTGGG-AATCCCT--TTTCTGGAGCTCTAGGAAGCCTGTGGGACCCACAGGCTGGAGGCCCAGCTGGAGAGCCAGCAGCAAGGTGGGA----
i canFam3.chr35            C 0 C 0
e dasNov3.JH567297            37025  44 +     53444 I

a score=178704.000000
s hg38.chr6_GL000254v2_alt  1491134 11 +   4827813 GCTGGGTGCCC
s panTro5.chr6             30360564 11 + 175400573 GCTGGGTGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594904 11 + 173848474 GCTGGGTGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301982 11 +   2037526 GCTGGGTGCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967946 11 + 122973662 GCTGGATGCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30846640 11 + 172585720 GCTGGATGCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30136127 11 - 170955103 GCTGGATGCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     385350 11 +   1495729 GCTGGATGCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     487060 11 -    863181 GCTGGATGCCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29635489 11 -  71996105 GCTGGATGCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     365595 11 -    735854 GCTGGATGCCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     274032 11 -   1829203 GTTGGATGCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30475254 11 + 171630274 GCTGGATGCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           281250 11 +    515838 GCTGGATGCCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     910432 11 -   1771730 GCTGGATGCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      91473 11 -    486031 GCTGGATGGCC
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               367027 11 + 123392446 GCTGGGTGCCC
i micMur3.chr6             C 0 I 641
s proCoq1.NW_012149775v1     176415 11 -   1411461 GCTGGGTGCCC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           321427 11 +  18854210 GCTGGATGCCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58103969 11 -  94987271 ACTGAAGGCTC
i mm10.chr17               C 0 C 0
s dasNov3.JH567297            37069 11 +     53444 GCAGGAAGCAA
i dasNov3.JH567297         I 44 C 0
e canFam3.chr35            26347731  0 +  26524999 C

a score=3020807.000000
s hg38.chr6_GL000254v2_alt  1491145 217 +   4827813 TCCCCCAGCAGTGGCTGGGCCAGCTGGAGCACATGCCAGCAGAAGCGGCCAGAATCCTTGACATCTCCAGGGCAGTAACACAGCTCAGAAGCCTGGTCATTGATCTGGAAAGGATGGCCAAGGAATTAGACACCAACACACTGAAGGTGCATACCCTGAGGCCTTCCCCAAG----GGCTGGGATTCTCCCC-GATAGGAGGCAGCCCATCTGCATCACCCT
s panTro5.chr6             30360575 217 + 175400573 TCCCTCAGCAGTGGCTGGGCCAGCTGGAGCACATGCCAGCAGAAGCGGCCAGAATCCTTGACATCTCCAGGGCAGTAACACAGCTCAGCAGCCTGGTCATTGATCTGGAGAGGACGGCCAAGGAATTAGACACCAACACACTGAAGGTGCATACCCTGAGGCCTTCCCCAAG----GGCTGGGATTCTCCCC-GATAGGAGGCAGCCCATCTGCATCACCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30594915 217 + 173848474 TCCCTCAGCAGTGGCTGGGCCAGCTGGAGCACATGCCAGCAGAAGCGGCCAGAATCCTTGACATCTCCAGGGCAGTAACACAGCTCAGCAGCCTGGTCATTGATCTGGAGAGGACGGCCAAGGAATTAGACACCAACACACTGAAGGTGCATACCCTGAGGCCTTCCCCAAG----GGCTGGGATTCTCCCC-GATAGGAGGCAGCCCATCTGCATCACCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     301993 217 +   2037526 TCCCTCAGCAGTGGCTGGGCCAGCTGGAGCACATGCCAGCAGAAGCGGCCAGAATCCTTGACATCTCCAGGGCAGTAACACAGCTCAGCAGCCTGGTCATTGATCTGGAGAGGACGGCCAAGGAATTAGACACCAACACACTGAAGGTGCATACCCTGAGGCCTTCCCCAAG----GGCTGGGATTCTCCCC-GATAGGAGGCAGCCCATCTGCATCACCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74967957 217 + 122973662 TCCCTCAGCAGTGGCTGGGCCAGCTGGAGCACATGCCAGCAGAAGTGGCCAGAATCCTTGACATCTCCAGGACAGTAACACAGCTCAGCAGCCTGGTCATTGATCTGGAGAGGACGGCCAAGGAATTAGACACCAACACACTGAAGGTGCATACCCTGAGGCCTCCCCCAGG----GGCTGGGATTCTCCCT-GATAGTAGGCAGCCCGTCTGCATCACCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30846651 216 + 172585720 TCCCTCAGCAGTGGCTGGGCCAGCTGGAGCACATGCCAGCAGAAGTGGCCAGAATCCTTGACATCTCCAGGGCAGTAACACAGCTCAGCAGCCTGGTCATTGATCTGGAGAGGACGGCCAAGGAATTAGACACCAACACACTGAAGGTGCATACCCTGAGGCTTCCCCCAAG----GGCTGGGTTTCTCCCC--ATAGTAGGCAGCCCATCTGCATCACCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30136138 216 - 170955103 TCCCTCAGCAGTGGCTGGGCCAGCTGGAGCACATGCCAGCAGAAGTGGCCAGAATCCTTGACATCTCCAGGGCAGTAACACAGCTCAGCAGCCTGGTCATTGATCTGGAGAGGACGGCCAAGGAATTAGACACCAACACACTGAAGGTGCATACCCTGAGGCTTCCCCCAAG----GGCTGGGTTTCTCCCC--ATAGTAGGCAGCCCATCTGCATCACCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     385361 217 +   1495729 TCCCTCAGCAGTGGCTGGGCCAGCTGGAGCACATGCCAGCAGAAGTGGCCAGAATCCTTGACATCTCCAGGGCAGTAACACAGCTCAGCAGCCTGGTCATTGATCTGGAGAGGACGGCCAAGGAATTAGACACCAACACACTGAAGGTGCATACCCTGAGGCTTCCCCCAAG----GGCTGGGTTTCTCCCC-GATAGTAGGCAGCCCATCTGCATCACCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     487071 217 -    863181 TCCCTCAGCAGTGGCTGGGCCAGCTGGAGCACATGCCAGCAGAAGTGGCCAGAATCCTTGACATCTCCAGGGCAGTAACACAGCTCAGCAGCCTGGTCATTGATCTGGAGAGGACGGCCAAGGAATTAGACACCAACACACTGAAGGTGCATACCCTGAGGCTTCCCCCAAG----GGCTGGGTTTCTCCCC-GATAGTAGGCAGCCCATCTGCATCACCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29635500 216 -  71996105 TCCCTCAGCAGTGGCTGGGCCAGCTGGAGGCCATGCCAGCAGAAGTGGCCAGAATCCTTGACATCTCCAGGGCAGTAACACAGCTCAGCAGCCTGGTCATTGATCTGGAGAGGACGGCCAAGGAATTAGACACCAACACACTGAAGGTGCATACCCTGAGGCTTCCCCCAAG----GGCTGGGTTTCTCCCC--ATAGTAGGCAGCCCATCTGCATCACCCT
i chlSab2.chr17            C 0 I 165
s manLeu1.NW_012107142v1     365606 217 -    735854 TCCCTCAGCAGTGGCTGGGCCAGCTGGAGCACATGCCAGCAGAAGTGGCCAGAATCCTTGACATCTCCAGGGCAGTAACACAGCTCAGCAGCCTGGTCATTGATCTGGAGAGGACGGCCAAGGAATTAGACACCAACACACTGAAGGTGCATACCCTGAGGCTTCCCCCAAG----GGCTGGGTTTCTCCCC-GATAGTAGGCAGCCCATCTGCATCACCCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     274043 217 -   1829203 TCCCTCAGCAGTGGCTGGGCCAGCTGGAGCACATGCCAGCAGAAGTGGCCAGAATCCTTGACATCTCCAGGGCAGTAACACAGCTCAGCAGCCTGGTCATTGATCTGGAGAGGACGGCCAAGGAATTAGACACCAACACACTGAAGGTGCATACCCTGAGACTTCCCCCAAG----GGCTGGGTTTCTCCCC-GATAGTAGGCAGCCCATCTGCATCACCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30475265 207 + 171630274 TCCCTCAGCAGCAGCCGGGCCAGCTGGAGCACATGCCAGCAGAAGTGGCCAGA---------ATCTCTAAAGCAGTAACTCAGCTCAGCAGCCTGGTCATTGATCTGGAGAGGATGGCCAAGGAGTTAGACACCAACACCCTGAAGGTGCATACCCTGAGGCCT-CCCCAAG----GGCTGGGATTCTCCTG-GATAGTAGGCACCCCATCTGCATCACCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           281261 207 +    515838 TCCCTCAGCAGCGGCCGGGCCAGCTGGAGCACATGCCAACGGAAGTGGCCAGA---------ATCTCCAAAGCAGTAACTGAGCTCAGCAGCCTGGTCATTGATCTGGAGAGGATGGCCAAGGAGTTAGACACCAACACCCTGAAGGTGCATACCCTGAGGCCT-CCCCAAG----GACTGGGATTCTCCCC-GATAGTAGGCAACCCATGGGCATCCCCCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     910443 207 -   1771730 TCCCTCAGCAGCAGCCGGGCCAGCTGGAGCACATGCCAACAGAAGTGGCCAGA---------ATCTCCAAAGCAGTAACTCAGCTCAGCAGCCTGGTCATTGATCTGGAGAGGATGGCCAAGGAATTAGACACCAACACCCTGAAGGTGCATAACCTGAGGCCT-CCCCAAG----GGCTGGGATTCTCCTG-GATAGTAGGCAGCCCATCCGCATCACACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      91484 207 -    486031 TCCCTCAGCAGCGGCCGGGCCAGCTGGAGCACATGCCAGCAGAAGTGGCCAGA---------ATCTCCAAAGCAGTAACTCAGCTCAGCAGCCTGGTCGTTGATCTGGAGAGGATGGCCAAGGAGTTAGACACCAACACCCTGAAGGTGCATACCCTGAGGCCT-CCCCAAG----GGCTGGGATTCTCCCG-GATAGTAGGCAGCCCATCTGCATCCCCCT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     176426 218 -   1411461 TCCCTCAGCAGCGGCTGGACCAGTCGGAGGACGTGCCAGCAGAGGTGGTCAGAATCCTTGAGGTCTCCAGGGCAGCAGCACAGCTCAGCAGCCTGGTCACCGACCTGGAAAGGACAGCCAAGGAGCCAGACGCCCGCACACTGCAGGTGCGTAGCCCGAGGCCTTACCCAAA----GGCTGCCATCCGCCCCCAGTTCGAGACAGCCTACGTGCTGCACCCC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           321438 194 +  18854210 TCCCTCAGCAGCATCTGGACCAGCTGGAGGAAATGTCAGCAGAGGTGGTCAGAATCCTTGACATCTCCAGGGCAGTAGCACAGCTCAGCAGCCTGGTCACTGATCTGGAGAGGACAGCCAAGGAGCTAGATGCCAACACACTGAAGGTGCA-ATCCTGAGGCCTTTCTCAAA----GGCTGGGATTCTCCCC----------------AAATGCT-------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58103980 216 -  94987271 TCCCATGGCATTGGCTGGACCA---AGAGGACTTACCAGAGGAGGTGGCCAAGATCTTTAGCTTCTCTGAGGCAGTAACACAGCTCAGCATCCTGGTTTCTGGCCTGGAAAGGATGGCCAAGGATCTGGATGCCAGCACCCTGAAGGTGTACTTCCTAAGACAC-CCCCAAGTTCAGAGAGGGATTCTTTGA--ATAGTAAACAGGCTTCCTGCAGGTCCCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26347731 175 +  26524999 ------------GGCCAGGCCCACTAGAGGACATGCCAGCAGAGGTAGCCACGATCCTTGGCATCTCCAGAGTCATGACACAGTTCAGCAACCTGCTCACAGAGCTGCAAGAGACCATCCAGGGGCTAAGTGTGGACACACTGAAGGTGCAGACCCCGGGGGTCCCCTCAAG----TGGTAGGCGGCACCC-------------------------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            37080 210 +     53444 CCTCTCCACAGCAGCTGGGCCAGCTGGAGGATGTGCCAGCAGAGGAGCCGAGAGTCCAGGCCATCTCCAAGACTGTGGAACAGCGCAGCATGCTGGTCGCTGATCTGGAGAGGATGGCCAAGGACCTGGATGCCAGCATGCTGAAGGTGTGTACCCCCAGGTACCTCCCAGG----AGCAGGCAGCCTGCCT--------GTGATGCCTCCAGCTCCTCCCC
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367038 641 + 123392446 I

a score=2679710.000000
s hg38.chr6_GL000254v2_alt  1491362 222 +   4827813 TCTGGAAGGTGTAAGAGGGAGGGGCCTGTGTGATATGTGGTGACT------------------------TGTGGTAG----------------------------------------------------ATGTGGCTTGT------------------------TCCAGGCTACA--------------------------------------------------------------------GAGTGCTGCTGCAGCAGAAT-----------------GGGCACAGAAGAGGG----GTGTTGCTATGTTCCCCCAGTTCTCAAGGTGGCACCCCAGAGTGGCCTCCAAGAGTGAATTGGGAAAGGAATTTGGAGGTGATAGGAACCTGAGAACCAATTATGATTCTCA
s panTro5.chr6             30360792 222 + 175400573 TCTGGGAGGTGTAAGAGGGAGGGGCCTGTGTGATATGTGGTGACT------------------------TGTGGTAG----------------------------------------------------ATGTGGCTTGT------------------------TCCAGGCTACA--------------------------------------------------------------------GAGTGCTGCTGCAGCAGAAT-----------------GGGCACAGAAGAGGG----GTGTTGCTATGTTCCCCCAGTTCTCAAGGTGGCACCCCAGAGTGGCCTCCAAGAGCGAATTGGGAAAGGAATTTGGAGGTGATAGGAACCTGAGAACCAATTATGATTCTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30595132 222 + 173848474 TCTGGGAGGTGTAAGAGGGAGGGGCCTGTGTGATATGTGGTGACT------------------------TGTGGTAG----------------------------------------------------ATGTGGCTTGT------------------------TCCAGGCTACA--------------------------------------------------------------------GAGTGCTGCTGCAGCAGAAT-----------------GGGCACAGAAGAGGG----GTGTTGCTATGTTCCCCCAGTTCTCAAGGTGGCACCCCAGAGTGGCCTCCAAGAGCGAATTGGGAAAGGAATTTGGAGGTGATAGGAACCTGAGAACCAATTATGATTCTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     302210 222 +   2037526 TCTGGGAGGTGTAAGAGGGAGGGGCCTGTGTGATATGTGGTGACT------------------------TGTGGTAG----------------------------------------------------ATGTGGCTTGT------------------------TCCAGGCTACA--------------------------------------------------------------------GAGTGCTGCTGCAGCAGAAT-----------------GGGCACAGAAGAGGG----GTGTTGCTATGTTCCCCCAGTTCTCAAGGTGGCACCCCAGAGTGGCCTCCAAGAGTGAATTGGGAAAGGAATTTGGAGGTGATAGGAACCTGAGAACCAATTATGATTCTCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74968174 222 + 122973662 TCTGGGAGGTGTAAGAGGGAGGGGCCCATGTGATATGTGGTGACT------------------------TGTGGTAG----------------------------------------------------ATATGGCTTGT------------------------TCCAGGCTACA--------------------------------------------------------------------GAGTGCTGCTGCAGCAGAAT-----------------GGGCACAGAAGAGGG----GTGTTGCTATGTTCCCCCAGTTCTCAAGGTGGCACCCCAGAGTGGCCTCCCAGAGTGAATTGGGAAAGGAATTTGGAGGTGATAGGAACCTGAGAACCAATTATGATTCTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30846867 222 + 172585720 TCTGGGAGGTGTAAGAGGGAGGGGCCAGTGTGATATGTGGTGAGT------------------------TGTGGTAG----------------------------------------------------ACGTGGCTTGT------------------------TCCAGGCTACA--------------------------------------------------------------------GAGTGCTGCTGCAGCAGAAT-----------------GGGCACAGAAGAGGG----GTGTTGCTATGTTCCCCCAGTTCTCAAGGTGGCACCCCAGAGTGGCCTCCAAGAGTGAATTGGGAAAGGAATTTGGAGGTGATAGGAACCTGAGAACCAATTGTGATTCTCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30136354 222 - 170955103 TCTGGGAGGTGTAAGAGGGAGGGGCCAGTGTGATATGTGGTGAGT------------------------TGTGGTAG----------------------------------------------------ACGTGGCTTGT------------------------TCCAGGCTACA--------------------------------------------------------------------GAGTGCTGCTGCAGCAGAAT-----------------GGGCACAGAAGAGGG----GTGTTGCTATGTTCCCCTAGTTCTCAAGGTGGCACCCCAGAGTGGCCTCCAAGAGTGAATTGGGAAAGGAATTTGGAGGTGATAGGAACCTGAGAACCGATTATGATTCTCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     385578 222 +   1495729 TCTGGGAGGTGTAAGAGGGAGGGGCCAGTGCGATATGTGGTGAGT------------------------TGTGGTAG----------------------------------------------------ACGTGGCTTGT------------------------TCCAGGCTACA--------------------------------------------------------------------GAGTGCTGCTGCAGCAGAAT-----------------GGGCACAGAAGAGGG----GTGTTGCTATGTTCCCCTAGTTCTCAAGGTGGCACCCCAGAGTGGCCTCCAAGAGTGAATTGGGAAAGGAATTTGGAGGTGATAGGAACCTGAGAACCGATTATGATTCTCG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     487288 222 -    863181 TCTGGGAGGTTTAAGAGGGAGGGGCCAGTGTGATATGTGGTGAGT------------------------TGTGGTAG----------------------------------------------------ACGTGGCTTGT------------------------TCCAGGCTACA--------------------------------------------------------------------GAGTGCTGCTGCAGCAGAAT-----------------GGGCACAGAAGAGGG----GTGTTGCTATGTTCCCCCAGTTCTCAAGGTGGCACCCCAGAGTGGCCTCCAAGAGTGAATTGGGAAAGGAATTTGGAGGTGATAGGAACCTGAGAACCAATTATGATTCTCG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29635881 222 -  71996105 TCTGGGAGGTGTAAGAGGGAGGGGCCGGTGTGATATGTGGTGAGC------------------------TGTGGTAG----------------------------------------------------ACGTGGCTTGT------------------------TCCAGGCTACA--------------------------------------------------------------------GAGTGCTGCTGCAGCAGAAT-----------------GGACACAGAAGAGGG----GTGTTGCTATGTTCTCCCAGTTCTCAAGGTGGCACCCCAGAGTGGCCTCCAAGAGTGAATTGGGAAAGGAATTTGGAGGTGATAGGAACCTGAGAACCAATTATGATTCTCG
i chlSab2.chr17            I 165 C 0
s manLeu1.NW_012107142v1     365823 222 -    735854 TCTGGGAGGTTTAAGAGGGAGGGGCCAGTGTGATATGTGGTGAGT------------------------TGTGGTAG----------------------------------------------------ACGTGGCTTGT------------------------TCCAGGCTACA--------------------------------------------------------------------GAGTGCTGCTGCAGCAGAAT-----------------GGGCACAGAAGAGGG----GTGTTGCTATGTTCCCCCAGTTCTCAAGGTGGCACCCCAGAGTGGCCTCCAAGAGTGAATTGGGAAAGGAATTTGGAGGTGATAGGAACCTGAGAACCAATTATGATTCTCG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     274260 222 -   1829203 TCTGGGAGGTGTAAGAGGGAGGGGCCAGTGTGATATGTGGTGAGT------------------------TGTGGTAG----------------------------------------------------ACGTGGCCTGT------------------------TCCAAGCTACA--------------------------------------------------------------------GAGTGCTGCTGCAACAGAAT-----------------GGGCACAGAAGAGGG----GTGTTGCTATGTTCCCCCAGTTCTCAAGGTGGCACCCCAGAGTGGCCTCCAAGAGTGAATTGGGAAAGGAATTTGGAGGTGATAGGAACCTGAGAACCAATTATGATTCTCG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30475472 220 + 171630274 TCTGGGAGGTGTAAGAGGGAGGGGCCCATGTGATATGTGGTGATT------------------------TGTGGTAG----------------------------------------------------ACAATGCTTGT------------------------TCCGGTCTACA--------------------------------------------------------------------GAGTGCTGCTGCAGCAGAAT-----------------GGGTACAGAAGAGGG----GTGTTGCTATGTTCCCCCAGTTCTCAAGGT--GACCCCAGAGTGGCCTCTAAGAGTGAATTGGGAAAGGAATTTGGAGGTGAATGGAATCTGAGAACTGATTATGATTCTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           281468 222 +    515838 TCTGGGAGGTGTAAGAAGGAGGGGCCCGTGGGATACGTGGTGATT------------------------TGTGGTAG----------------------------------------------------ACAATGCTTGT------------------------TCCAGGCTACA--------------------------------------------------------------------GAGTGCTGCCGCAGCAGAAT-----------------GGGTACAGAAGAGGG----GTGTTGCTATGCTCCCCCAGTTCTCAAGGTGGGACCCCAGAGTGGCCTCTAAGAGTGAATTGGGAAAGGAATTTGGAAGTGAATGGAACCTGAGAACCGATTATGATTCTCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     910650 222 -   1771730 TCTGGGAGGTGTAAGAGGGAGGGGCCCATGTGATATGTGGTGATA------------------------TGTGGTAG----------------------------------------------------ACAATGCTTGT------------------------TCCAGGCTACA--------------------------------------------------------------------GAGTGCTGCTGCAGCAGAAT-----------------GGGTACAGAAGAGGG----GTGTTGCTATGTTCCCCAAGTTCTCAAGGTGGGACCCCAGAGTGGCCTCTAAGAGTGAATTGGGAAAGGAATTTGGAGGTGATGGGAACCTGAGAACTGATTATGATTCTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      91691 222 -    486031 TCTGGGAGGTGTAAGAGGGAGGGGCCCATGTGATATGTGGTGATT------------------------TGTGGTAG----------------------------------------------------ATAATGCTTGT------------------------TCCTGGCTACA--------------------------------------------------------------------GAGTGCTGCTGCAGCAGAAT-----------------GGGTACAGAAGAGGG----GTGTTGCTATGTTCCCCCAGTTCTCAAGGTGGGACCCCATGGTGGCCTCTAAGAGTGAATTGGGAAAGGAATTTGGCGGTGACAGGAACCTGAGAACCGATTATGATTCTCA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     176644 205 -   1411461 TCTGGGAGGTGTGAGAGGGAGGGGCTCATGCGACATGCAGTGACA------------------------TATGCTGG----------------------------------------------------TGGTGGCTTAT------------------------CCCAGGCCACA--------------------------------------------------------------------CAATGCTGCTGCAG----------------------------CAGAGGGAGG----GTG-----CTATCCCCCCAGTTCTCAGGGTGGCACCCCGGAGTGGCCTCCGAGAGTGAGTTGGGAAGGG-ATTTTGGGGGGACAGGAACCTGAGAACTGACTGTGGTTCTCA
i proCoq1.NW_012149775v1   C 0 I 66
s otoGar3.GL873550           321632 211 +  18854210 ------AGGTGTAAGAGGGAGGGGCTCATGTGACATGTGGTGGCA------------------------TGTGCTGG----------------------------------------------------TGGTGGCTTGT------------------------CTCAGACCACA--------------------------------------------------------------------CAGTGCTTCTGCAGTAGTGT-----------------GGGTACAAAAGAAGG----GTG-----ATATCCCCTCATTTCTCAAGGTGACACACCAGAGTAGCCTCCAAGAGTGAGTTGGGAAGGGCATTTGGAAGTGATGGGAACTTGTGAACTGATTGTGATCCTTA
i otoGar3.GL873550         C 0 I 4
s mm10.chr17               58104196 396 -  94987271 TCTGGGAGGTGTAAG-GGGAGGTTCTCCTGGTatgtgtggtggtttcagtgtgtgtgcatgcatgtgtatgtggtgtgtgtgtgtgtacatgagagcacacgagtgagtgttcgagaatgtgtgtgtgcatgtggtctgtgtgtgtacatgcacatGCATGCTCTCCTGAGCACAAgtgtgcatgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtTGAGTG-TGGGGCAGGTGGATTGTACAGGTCTACACCATGACACAACAGAGTGAGGCGGGGTGCTGTG---CTTTGGGTCTCATGGCAGCATG-CAGAGCGGCCCTCAAGCATGAACCAGGGAGGGTATTC---AGTGGCAAGAACATAGAAACTGACTGTCA------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26347906 121 +  26524999 ACCGGTTGGTGTGAGAGGGA-----------------------TC------------------------CGTGGCAA------------------------------------------------------------------------------------------------CA--------------------------------------------------------------------GCGAGCA------------------------------GGGCACCA------------------------CCCCTAGCTCT----GGGGGACCCAGGTGGGG---------------------AGGGGTTTAGAGGTGGCAGGAAGCTGGGAACCTATCGTGATTCTTG
i canFam3.chr35            C 0 I 2
s dasNov3.JH567297            37290 151 +     53444 --------------------------------------TTTGACC------------------------CATGATGG--------------------------------------------------------TGCCTGT------------------------TCAAGGCCAGG--------------------------------------------------------------------ACACGCTCCTGCAGAAGCCTG----------------GGGTGCAAAAGAAGC-------CTGCCTTACTTTCC--ATTCTCAAGGGGGTGTC-------------------------AGGGAGGGAACGTAGAGGTGCCTGGAGCCTGAAAACAGAATGTGATTTTCA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367038 641 + 123392446 I

a score=1131803.000000
s hg38.chr6_GL000254v2_alt  1491584 90 +   4827813 CTTTTTCTC--TCTCCTAGAATGCTGGTGACTTACTGAACAGGTACGAGCTGTCCCTTCTTCTTTCCCACATGTGCA------TATA-----AACCCACACAA
s panTro5.chr6             30361014 90 + 175400573 CTTTTTCTC--TCTCCTAGAATGCTGGTGACTTACTGAACAGGTACGAGCTGTCCCTTCTTCTTTCCCACATGTGCA------TATA-----AACCCACACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30595354 90 + 173848474 CTTTTTCTC--TCTCCTAGAATGCTGGTGACTTACTGAACAGGTACGAGCTGTCCCTTCTTCTTTCCCACATGTGCA------CATA-----AACCCACACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     302432 89 +   2037526 CTTTTTCTC--TCTCCTAGAATGCTGGTGACTTACTGAACAGGTACGAGCTGTCCCTTCTTCTTTCCCACAT-TGCC------TATA-----AACCCACACAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74968396 90 + 122973662 CTTTTTCTC--TCTCCTAGAATGCTGGTGACTTACTGAACAGGTATGAGCTGTCCCTTCTTCTTTCCCACATGTGCA------TATA-----AACCCACACAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30847089 90 + 172585720 CTTTTTCTC--TCTTCTAGAATGCTGGTGACTTACTGAACAGGTATGAGCTGTCCCTTCTTCTTTCCCACATGTGCA------TATA-----AACCCACACAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30136576 90 - 170955103 CTTTTTCTC--TCTTCTAGAATGCTGGTGACTTACTGAACAGGTATGAGCTGTCCCTTCTTCTTTCCCACATGTGCA------TATA-----AACCCACACAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     385800 90 +   1495729 CTTTTTCTC--TCTTCTAGAATGCTGGTGACTTACTGAACAGGTATGAGCTGTCCCTTCTTCTTTCCCACATGTGCA------TATA-----AACCCACACAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     487510 90 -    863181 CTTTTTCTC--TCTTCTAGAATGCTGGTGACTTACTGAACAGGTATGAGCTGTCCCTTCTTCTTTCCCACATGTGCA------TATA-----AACCCACACAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29636103 90 -  71996105 CTTTTTCTC--TCTTCTAGAATGCTGGTGACTTACTGAACAGGTATGAGCTGTCCCTTCTTCTTTCCCACATGTGCA------TATA-----AACCCACACAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     366045 90 -    735854 CTTTTTCTC--TCTTCTAGAATGCTGGTGACTTACTGAACAGGTATGAGCTGTCCCTTCTTCTTTCCCACATGTGCA------TATA-----AACCCACACAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     274482 90 -   1829203 CTTTTTCTC--TCTTCTAGAATGCTGGTGACTTACTGAACAGGTATGAGCTGTCCCTTCTTCTTTCCCACATGTGCA------TATA-----AACCCACACAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30475692 85 + 171630274 CCTTT--TC--TCTCCTAGAATGCTGGTGACTTACTCAACAGGTATGAGCTGTCCCTTCTT---TCCCACATGTGCG------TATA-----AACCCACACAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           281690 90 +    515838 CATTTTCTC--TCTCCTAGAATGCCGGTGACTTACTGAACAGGTATGGGCTGTCCCTTCTTCTCTCCCACACATGCA------TATA-----AACCCACACAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     910872 90 -   1771730 CTTTTTCTC--TCTCCTAGAATGCCGGTGACTTACTGAACAGGTATGAGCTGCCCCTTCTTCTTTCCCACATGTGCA------TATA-----AACCCACACAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      91913 90 -    486031 CTTTTTCTC--TCTCCTAGAATGCCGGTGACTTACTGAACAGGTATGAGCTGTCCCTTCTTCTTTCCCACATGTGCA------TATA-----AACCCACACAA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           321847 96 +  18854210 CTTTCTCTC--TCTCCTAGAATGCCAGTGACTTACTGATAAGGTATGAGCCATCCTTCATTCCTTCCCACATGTGGACAAATGTACA-----AACCCACGCAA
i otoGar3.GL873550         I 4 C 0
s mm10.chr17               58104592 92 -  94987271 --CCTTTTC--TTTCCCAGGATGCCAGTGACTTACTGGACAGGTATAAGCC-CCTTTCCCTCTGTCCCACATATGAA------GACACATGCAGACCACATAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26348029 69 +  26524999 CTCTGGCTCGGTCTCCTAGGATGCCAGTGACTTACTGGATAGGTAGGTGCCATCTC-----ATTTCCCACAGGC-----------------------------
i canFam3.chr35            I 2 C 0
s dasNov3.JH567297            37441 72 +     53444 --CTCTTCC--TCTCCTAGGAGGCCAGTGACGTGCTCACCAGGTAGGA----TCCCTTCT-CCCTCGCACATGTGCT------TTAG----------------
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367038 641 + 123392446 I
e proCoq1.NW_012149775v1     176849 66 -   1411461 I

a score=1264138.000000
s hg38.chr6_GL000254v2_alt  1491674 119 +   4827813 CACAGACATGCACAGA--------------GGTCAAGGAGACCCACTGCTCCGTTAGCTTTTGTATCTTGATGCTACATGGCCAATGGAAGAGCCAATGGAATATATGAATACATATTAATCTATGAAGGATT
s panTro5.chr6             30361104 119 + 175400573 CACAGACATGCACAGA--------------GGTCAAGGAGACCCACTGCTCCGTTAGCTTTTGTATCTTGATGCTACATGGCCAATGGAAGAGCCAATGGAATATATGAATACATATTAATCTATGAAGGATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30595444 119 + 173848474 CACAGACATGCACAGA--------------GGTCAAGGAGACCCACTGCTCCGTTAGCTTTTGTATCTTGATGCTACATGGCCAATGGAAGAGCCAATGGAATATATGAATACATATTAATCTATGAAGGATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     302521 119 +   2037526 CACAGACATGCACAGA--------------GGTCAAGGAGACCCACTGCTCCGTTAGCTTTTGTATCTTGATGCTACATGGCCAATGGAAGAGCCAATGGAATATATGAATACATATTAATCTATGAAGGATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74968486 119 + 122973662 CACAGACATGCACAGA--------------GGTCAAGGAGACCCACTGCTCCATTAGCTTTTGTATCTTCATGCTACATGGCCAATGGAAGAGCCAATGGAATATATGAATACATATTAATCTATGAAGGATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30847179 130 + 172585720 CACAGACATGCACAGGGTCTTCGTC---ACGGTCAAGGAGACCCACTGCTCCATTAGCTTTTGTGTCCGCATGCTACATGGCCAATGGAAGAGTCAATGGAATACATGAATACTTATTAATCTATGAAGGATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30136666 130 - 170955103 CACAGACATGCACAGGGTCTTCGTC---ACGGTCAAGGAGACCCACTCCTCCATTAGCTTTTGTGTCCGCATGCTACATGGCCAATGGAAGAGTCAATGGAATACATGAATACTTATTAATCTATGAAGGATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     385890 130 +   1495729 CACAGACATGCACAGGGTCTTCGTC---ACGGTCAAGGAGACCCACTGCTCCATTAGCTTTTGTGTCTGCATGCTACATGGCCAATGGAAGAGTCAATGGAATACATGAATACTTATTAATCTATGAAGGATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     487600 130 -    863181 CACAGACATGCACAGGGTCTTCGTC---ACGGTCAAGGAGACCCACTGCTCCATTAGCTTTTGTGTCTGGATGCTACATGGCCAATGGAAGAGTCAATGAAATACATGAATACTTATTAATCTATGAAGGATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29636193 130 -  71996105 CACAGACATGCACAGGGTCTTCGTC---ACGGTCAAGGAGACCCACTGCTCCATTAGCTTTTGTGTCTGCATGCTACATGGCCAATGGAAGGGTCAATGAAATACATGAATACTTATTAATCTATGAAGGATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     366135 130 -    735854 CACAGACATGCACAGGGTCTTCGTC---ACGGTCAAGGAGACCCACTGCTCCATTAGCTTTTGTGTCTGGATGCTACATGGCCAATGGAAGAGTCAATGAAATACATGAATACTTATTAATCTATGAAGGATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     274572 130 -   1829203 CACAGACATGCACAGGGTCTTTGTC---ACGGTCAAGGAGACCCACTGCTCCATTAGCTTTTGTGTCTGCATGCTACATGGCCAATGGGAGAGTCAGTGGAATACATGAATACATATTAATCTATGAAGGATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30475777 116 + 171630274 CATAGACATGCACAGG-GGTTCATC---AAGGTCAAGGAGACCCACTGC-ATGAAGGTTTTTGTACCTTCATCCTACATGGCCAATTG------------AATATATGAATATATATTAATCTATGAAGGATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           281780 117 +    515838 CATAGGCATGCACAGG-GGTTCATC---AAGGTCAAGGAGACCCACTGCTCTGTTAGCTTTTGTATCTTCATGCTACATGGCCACTTG------------ACTATATGAATATATATTAATCTATGAAGGATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     910962 117 -   1771730 CATAGCCATGCACAGG-GGTTCATC---AAGGTCAAGGACACCCACGGCTCTGTTAGCTTTTGTATCTTCATGCTACATGGCCAATTG------------AATATATGAATATATATTAATCTATGAAGGATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      92003 117 -    486031 CATAGACATGCACAGG-GGTTCATC---AAGGTCAAGGAGACCCACTGCTCTGTTAGCTTTTGTATCTTCATGCTACATGGCCAATTG------------AATATATGAATATATATTAATCTATGAAGGATT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     176915 129 -   1411461 CGCAGACATGCGCAGG-GCTTCACC---CAGGTCAGGAAGACCCGCGGCTCCATTAGCCTTAGCGTCTTCATGCCGCATGGCCAGTGCAAGAGTCAATGGAATATATGCACGTATATGAATTCATGAAGGACT
i proCoq1.NW_012149775v1   I 66 C 0
s otoGar3.GL873550           321943 127 +  18854210 CATAGATGCACACAGG-GCCTAATG---TAGGTCAAGGAGA-CCACTGCTCCGTTAGCTTTCGTATCTTCATGCTATATAGCCAGTGGAAGATTCAATGGAATATGTGAATATA-ATGAATTTATGAAGGATT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58104684 112 -  94987271 CATAGATATGTATATGGGCTAAATTTAAAAAGTCAAGGAGATATAC-------------TTGATACCATCATACTACATGGCCAGGGGAAGATTCAGTAGAACATGT--------ATGAATTAATGAATGATT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26348098  76 +  26524999 --------------------------CTGAGTTCAGG-----------CTCTGCCACATTCTGGGGGATCATGAGAACGGATCAC---AAGAGTCTGCAGAATCTAC-----------------CAAAGGATT
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            37513  74 +     53444 ---------------------------CAAGATCAAGGGAATCCCCTGCTCAGCTCTTTTTT-TATCTCCATG--------------GAAGACTCAATGGAATGTAC-----------------TGAAGGATT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367038 641 + 123392446 I

a score=666108.000000
s hg38.chr6_GL000254v2_alt  1491793 36 +   4827813 TCTTTGTTTCTAGGAGTGCTCCACAGAAATTAGAGG
s panTro5.chr6             30361223 36 + 175400573 TCTTTGTTTCTAGGAGTGCTCCACAGAAATTAGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30595563 36 + 173848474 TCTTTGTTTCTAGGAGTGCTCCACAGAAATTAGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     302640 36 +   2037526 TCTTTGTTTCTAGGAGTGCTCCACAGAAATTAGAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74968605 36 + 122973662 TCTTTGTTTCTAGGAGTGCTCCACAGAAATTAGAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30847309 36 + 172585720 TCTTTGTTTCTAGGAGCGCTCCACAGAAATTAGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30136796 36 - 170955103 TCTTTGTTTCTAGGAGCACTCCACAGAAATTAGAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     386020 36 +   1495729 TCTTTGTTTCTAGGAGCGCTCCACAGAAATTAGAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     487730 36 -    863181 TCTTTGTTTCTAGGAGCGCTCCACAGAAATTAGAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29636323 36 -  71996105 TCTTTGTTTCTAGGAGCACTCCACAGAAATTAGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     366265 36 -    735854 TCTTTGTTTCTAGGAGCGCTCCACAGAAATTAGAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     274702 36 -   1829203 TCTTTGTTTCTAGGAGTGCTCCACAGAAATTAGAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30475893 36 + 171630274 TCTTTGTTTCTAGGAGTGCTCCACAGAAACTAGAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           281897 34 +    515838 --TTTGTTTCTAGGAGTGCTCCGCAGAAACTAGAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     911079 36 -   1771730 TCTTTGTTTCTAGGAGTGCTCCACAGAAACTAGAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      92120 36 -    486031 TCTTTGTTTCTAGGAGTGCTCCACAGAAACTAGAGG
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               367679 36 + 123392446 TCTCTGTTTCCAGGAGTGCCCCACAGAGAGCAGAGG
i micMur3.chr6             I 641 C 0
s proCoq1.NW_012149775v1     177044 36 -   1411461 TCTTTGTTTCTAGGGGTGCTCCACAGAAATTAGACG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           322070 36 +  18854210 TCTTTGTTTCTAGGAGTGCTCCAGAGAAATTAGAGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58104796 36 -  94987271 TCTTTGTCTTTAGGAGCGCACCACAGAAATTAGAAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26348174 36 +  26524999 TCTTTGTTTCTAGGAGCAATCCACAGAAATTAGAGG
i canFam3.chr35            C 0 I 1
s dasNov3.JH567297            37587 36 +     53444 TCTTTATTTCCAGGAGTACTTGACACAAATTACAGG
i dasNov3.JH567297         C 0 C 0

a score=123403.000000
s hg38.chr6_GL000254v2_alt  1491829 8 +   4827813 TTATTTAT
s panTro5.chr6             30361259 8 + 175400573 TTATTTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30595599 8 + 173848474 TTATTTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     302676 8 +   2037526 TTATTTAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74968641 8 + 122973662 TTATTTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30847345 8 + 172585720 TTATTTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30136832 8 - 170955103 TTATTTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     386056 8 +   1495729 TTATTTAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     487766 8 -    863181 TTATTTAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29636359 8 -  71996105 TTATTTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     366301 8 -    735854 TTATTTAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     274738 8 -   1829203 TTATTTAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30475929 8 + 171630274 TTATTTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           281931 8 +    515838 TTATTTAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     911115 8 -   1771730 TTATTTAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      92156 8 -    486031 TTATTTAT
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               367715 8 + 123392446 CTCTTTAT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     177080 8 -   1411461 TTCTGTAT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           322106 8 +  18854210 TTATTTAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26348211 8 +  26524999 TGATTTAT
i canFam3.chr35            I 1 I 196
s dasNov3.JH567297            37623 8 +     53444 CCACTGAT
i dasNov3.JH567297         C 0 C 0
e mm10.chr17               58104832 0 -  94987271 C

a score=300669.000000
s hg38.chr6_GL000254v2_alt  1491837 21 +   4827813 CCCCAGTTGAAGAAAGGAGTC
s panTro5.chr6             30361267 21 + 175400573 CCCCAGTTGGAGAAAGGAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30595607 21 + 173848474 CCCCAGTTGGAGAAAGGAGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     302684 21 +   2037526 CCCCAGTTGGAGAAAGGAGTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74968649 21 + 122973662 CCCCAGTTGGAGAAAGGAGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30847353 21 + 172585720 CCCCAGTTGGAGAAAAGAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30136840 21 - 170955103 CCCCAGTTGGAGAAAAGAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     386064 21 +   1495729 CCCCAGTTGGAGAAAAGAGTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     487774 21 -    863181 CCCCAGTTGGAGAAAAGAGTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29636367 21 -  71996105 CCCCAGTTGGAGAAAAGAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     366309 21 -    735854 CCCCAGTTGGAGAAAAGAGTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     274746 21 -   1829203 CCCCAGTTGGAGAAAAGAGTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30475937 21 + 171630274 CCCCAGCTGGGGAAAAGAGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           281939 21 +    515838 CCCCAGTTGGGGAAAAGAGTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     911123 21 -   1771730 CCCCAGTTGGGGAAAAGAGTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      92164 21 -    486031 CCCCATTTGGGGAAAAGAGTC
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               367723 21 + 123392446 CCCGAGCTGGAGAAAGGAGTC
i micMur3.chr6             C 0 I 4591
s proCoq1.NW_012149775v1     177088 21 -   1411461 CCCGAGCTGGAGAAAAGAGTC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           322114 21 +  18854210 CCTGAGCTGGAGAAAAAAGTC
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            37631 20 +     53444 CTTGAGTTGTAGAAGAAATC-
i dasNov3.JH567297         C 0 C 0
e mm10.chr17               58104832  0 -  94987271 C
e canFam3.chr35            26348219 196 +  26524999 I

a score=276098.000000
s hg38.chr6_GL000254v2_alt  1491858 20 +   4827813 AGTGAATTGCTTCTTCAGCC
s panTro5.chr6             30361288 20 + 175400573 AGTGAATTGCTTCTTCAGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30595628 20 + 173848474 AGTGAATTGCTTCTTCAGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     302705 20 +   2037526 AGTGAATTGCTTCTTCAGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74968670 20 + 122973662 AGTGAATTGCTTCTTCAGCC
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             30847374 20 + 172585720 AGTGAATTGCTTCTTCAGCC
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             30136861 20 - 170955103 AATGAATTGCTTCTTCAGCC
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     386085 20 +   1495729 AATGAATTGCTTCTTCAGCC
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     487795 20 -    863181 AATGAATTGCTTCTTCAGCC
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29636388 20 -  71996105 AATGAATTGCTTCTTCAGCC
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1     366330 20 -    735854 AATGAATTGCTTCTTCAGCC
i manLeu1.NW_012107142v1   C 0 I 1
s colAng1.NW_012115577v1     274767 20 -   1829203 AGTGAATTGCTTCTTCAGCC
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30475958 20 + 171630274 AATGAATTGCTTCTTCAGCC
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           281960 20 +    515838 AATGAATTGCTTCTTCAGCC
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     911144 20 -   1771730 AATGAATTGCTTCTTCAGCC
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496901v1      92185 20 -    486031 AATGAATTGTTTCTTCAGCC
i aotNan1.NW_018496901v1   C 0 I 1
s proCoq1.NW_012149775v1     177109 20 -   1411461 AGTGAATCACTTCTCCAGCC
i proCoq1.NW_012149775v1   C 0 I 7895
s otoGar3.GL873550           322135 20 +  18854210 AATGAATCACTTCTTCAGCC
i otoGar3.GL873550         C 0 I 1
s dasNov3.JH567297            37651 20 +     53444 CGTGGGTAACTTGTTCCACC
i dasNov3.JH567297         C 0 I 1
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58104832  0 -  94987271 C
e canFam3.chr35            26348219 196 +  26524999 I

a score=764485.000000
s hg38.chr6_GL000254v2_alt  1491878 56 +   4827813 CCCTCAGAAGCTCTGACCTGTTCATCCCTGGGACACCTCACTTCAGGCTCACCTCA
s panTro5.chr6             30361308 56 + 175400573 CCCTCAGAAGCTCTGACCTGTTCATCCCTGGGACACCTCACTTCAGGCTCACCTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30595648 56 + 173848474 CCCTCAGAAGCTCTGACCTGTTCATCCCTGGGACACCTCACTTCAGGCTCACCTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     302725 56 +   2037526 CCCTCAGAAGCTCTGACCTGTTCATCCCTGGGACACCTCACTTCAGGCTCACCTCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74968691 56 + 122973662 CCCTCAGAAGCTCTGACCTGTTCATCCCTGGGACACCTCACTTCAGGCTCACCTCA
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30847395 56 + 172585720 TCCTCAGAAGCTCTGACCTGTTCATCCCTGGGACGCCTTACTTCAGGCTCACCTCA
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30136882 56 - 170955103 TCCTCAGAAGCTCTGACCTGTTCATCCCTGGGACACCTCACTTCAGGCTCACCTCA
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     386106 56 +   1495729 TCCTCAGAAGCTCTGACCTGTTCATCCCTGGGATGCCTTACTTCAGGCTCACCTCA
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     487816 56 -    863181 TCCTCAGAAGCTCTGACCTGTTCATCCCTGGGAcacctcacttcacgctcacctca
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29636409 56 -  71996105 TCCTCAGAAGCTCTGACCTGTTCATCCCTGGGAcacctcacttcacgctcacctca
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1     366351 56 -    735854 TCCTCAGAAGCTCTGACCTGTTCATCCCTGGGAcacctcacttcacgctcacctca
i manLeu1.NW_012107142v1   I 1 C 0
s colAng1.NW_012115577v1     274788 56 -   1829203 TCCTCAGAAGCTCTGACCTGTTCATCCCTGGGACACCTCACTTCAGGCTCACCTCA
i colAng1.NW_012115577v1   I 1 C 0
s calJac3.chr4             30475979 56 + 171630274 TCCTCAGAAGCTCTGACCTGTTCATCTCTGGGACACCTCACTTCAGGCTCACCTCA
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           281981 56 +    515838 TCCTCAGAAGCTCTGACCTGTTCATCTCTGGGACACCTCACTTCAGGCTCACCTCA
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     911165 56 -   1771730 TCCTCAGAAGCTCTGACCTATTTATCTCCGGGACACCTCACTTCAGGCTCACCTCA
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496901v1      92206 56 -    486031 TCCTCAGAAGCTCTGACCTGTTCATCTCTGGGACACCTCACTTCAGGCTCACCTCA
i aotNan1.NW_018496901v1   I 1 C 0
s proCoq1.NW_012149775v1     185024 56 -   1411461 CCCCCAGCAGCTCTGACCTGTTCACGCCTGGGCCACCTCATTTCAAGCTCAGCTCG
i proCoq1.NW_012149775v1   I 7895 C 0
s otoGar3.GL873550           322156 56 +  18854210 TCCTCCACAGCTCTGACCTGTTCACGCCCGGGCCACCTCATTTCAGACTCACCTCG
i otoGar3.GL873550         I 1 C 0
s dasNov3.JH567297            37672 46 +     53444 TCCTCAGCTGCTCGGACCAGTGCAC----------CCTCATCTCAGGCTCACCTTG
i dasNov3.JH567297         I 1 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58104832  0 -  94987271 C
e canFam3.chr35            26348219 196 +  26524999 I

a score=1796775.000000
s hg38.chr6_GL000254v2_alt  1491934 138 +   4827813 GCCTCCTCTCTCTCCTTCCTCCAACCTGTCCAGGCCCCCACTGGGTCTACCCAGTGCATCTTCGGGCCTGCCAGCTCCTGAACATGTCACCATTTCTTCATGTCCACAGTCATCACCTGATGCCTGACCCTCTGACTC
s panTro5.chr6             30361364 138 + 175400573 GCCTCCTCTCTCTCCTTCCTCCAACCTGTCCAGGCCCCCACTGGGTCTACCCAGTGCATCTTCGGACCTGCCAGCTCCTGAACATGTCACCATTTCTTCATGTCCACAGTCATCACCTGATGCCTGACCGTCTGACTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30595704 138 + 173848474 GCCTCCTCTCTCTCCTTCCTCCAACCTGTCCAGGCCCCCACTGGGTCTACCCAGTGCATCTTCGGGCCTGCCAGCTCCTGAACATGTCACCATTTCTTCATGTCCACAGTCATCACCTGATGCCTGACCCTCTGACTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     302781 138 +   2037526 GCCTCCTCTCTCTCCTTCCTCCAACCTGTCCAGGCCCCCACTGGGTCTACCCAGTGCATCTTTGGGCCTGCCAGCTCCTGAACATGTCACCATTTCTTCATGTCCACAGTCATCACCTGATGCCTGACCCTCTGACTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74968747 138 + 122973662 GCCTCCTCTCTCTCCTTCCTCCAACCTGTCCAGGCCCCCATTAGGTCTACCCAGTGCATCTTCGGGCCTGCCAGCTCCTGAACATGTCACCATTTCTTCATGTCTACAGTTGTCACCTGATGCCTGACCCTCTGACTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30847451 138 + 172585720 GCCTCCTCTCTCTCCTTCCTCCAACCTGTCCAGGCCCCCATTAGATCTACCCAGTGCATCTTCGGGCTTGCCAGCTCCTGAACATGTCCCAATTTCTTCATGCCCACCGTCATCACCTGATGCCTGACCCTCTGACTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30136938 138 - 170955103 GCCTCCTCTCTCTCCTTTCTCCAACCTGTCCAGGCCCCCATTAGATCTACCCAGTGTATCTTCGGGCTTGCCAGCTCCTGAACATGTCCCCATTTCTTCATGCCCACCGTCATCACCTGATGCCTGACCCTCTGACTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     386162 138 +   1495729 GCCTCCTCTCTCTCCTTTCTCCAACCTGTCCAGGCCCCCATTAGGTCTACCCAGTGTATCTTCGGGCTTGCCAGCTCCTGAACATGTCCCCATTTCTTCATGCCCACCGTCATCACCTGATGCCTGACCCTCTGACTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     487872 138 -    863181 tcctcCTGTCTCTCCTTTCTCCAACCTGTCCAGGCCCCCATTAGATCTATCCAGTGCATCTTTGGGCTTGCCAGCTCCTGAACAAGTCCCCATTTCTTCATGCCCACCATCATCACCTGATGCCTGACCCTCTGACTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29636465 138 -  71996105 gcctcCTCTCTCTCCTTTCTCCAACCTGTCCAGGCCCCCATTAGATCTACCCAGTGCATCTTCAGGCTTGCCAGCTCCTGAACATGTCCCCATTTCTTCATGCCCACCATCATCACCTGATGCCTGACCCTCTGACTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     366407 138 -    735854 tcctcCTGTCTCTCCTTTCTCCAACCTGTCCAGGCCCCCATTAGATCTATCCAGTGCATCTTCGGGCTTGCCAGCTCCTGAACAAGTCCCCATTTCTTCATGCCCACCATCATCACCTGATGCCTGACCCTCTGACTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     274844 138 -   1829203 GCCTCCTCTCTCTCCTTCCTCCAACCTGTCCAGGCCCCCATTAGATCTACCCAGTGCATCTTCGGGCTTGCCAGCTCCTGAACATGTCCCCATTTCTTCATGCCCACCATCATCACCTGATGCTTGACCCTCTGACTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30476035 138 + 171630274 GCCTCCTCTTTCTCCCCCCTCCAACCTGTCCAGACCACCGTTAGATCTACCCGGTGCATCTTCAGGCCTGCCAGCTCCTGAACATGTCCCCGTTTCCTCATGCCCACAGTCATCACCTGATGCCTGACACTCGGACTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           282037 138 +    515838 GCCTCCTCTTTCTCCTTCCTCCAACCTGTCCAGGCCCCCATTAGGTCTACCCAGTGCATCTTCAGGCCTGCCAGCTCCTGAACATGTCCCCGTTTCCACATGCCCACAGTCATCACCTGATGCCTGACACTCTGACTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     911221 138 -   1771730 GCCTCCTCCTTCTCCTTCCTCCAACCTGTCCAGGCCCCCGTTAGGTCTACCCGGTGCATCTTCAGGCCCGCCAGCTCCTGAACATGTCCCCATTTCCTCATGCCCACAGTCATCAACTGATGCCTGACACTCCGACTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      92262 118 -    486031 GCCTCCTCTTTCTCCTTCCTCCAACCTGCCCAGGCCCCCATTAGGTCTACCCGGTGCATCTTCAGGCCTGCCAGCTCCTGAACATGTCCCCATTTC--------------------CTGATGCCTGACACTCTGACTC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     185080 136 -   1411461 GCCTCCTCCCTCTCCTTCCTCCAACCTGTCCAG-CCCCCATTAGGTGTAGCCAGTGCATCTTCAGGCCTGCCGTCTCCTGAACATGTCCCCAGTTCCTCATATC-ACAGCTGTCACCTGCTCCCTGACCCTGTGACTC
i proCoq1.NW_012149775v1   C 0 I 248
s otoGar3.GL873550           322212 138 +  18854210 GCCTCCTCTCTCTCCTTCCTCCAACCTGTCCAGCCCCCCGTTAGGTGTACCCAATGCATCTTCAGGACCGCCATCTCCTGAACGCTTCCCCATTTCCTCATACCTACAGACATCACCTAATGCCTAACCCTCTGACTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58104832 101 -  94987271 GACTTCTCTCTCGTGTTTCTCCAGCTGGTCCAAAGCTCAGTTAG-TCTTCCTGGTATA------------------------------------TTCTCATCCTCACAGCTCCCATCTGATGATCTAGCTTCTGACGC
i mm10.chr17               C 0 C 0
s dasNov3.JH567297            37718 131 +     53444 GCCTCCTC--TCTCCTTCCTTCAACTTGTCCAGGACCCTCTC--GTCTACCTGGTGCATGTCCA--CCTGCCATCTCGTGGACATGTCCAC-CTCCCTTGTCCTCACAGCCTCTGCCTAGTGCCTGACCCTCTGACAC
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e canFam3.chr35            26348219 196 +  26524999 I

a score=2542136.000000
s hg38.chr6_GL000254v2_alt  1492072 225 +   4827813 TTGGACGATAGC--CAGCCTCCTTCC-AGGA-CAGGCTCATGCTTGGGGCTGCCACTGTGGAGGTCGGGGCCCATGGTCTCCAGGAGCATTTGTGAAATCTCCATTTTGCCTGTAAACTGATGGTAGTGCCCATCTCTCACAATCTC--ATTCAAATAGGATCCTCCAGGCCTCTGAATGGCCCGAGCTCATCAGCAGTGACATCACCTCA---CATGTGGAGCCCAGC--------------------------TGAGT
s panTro5.chr6             30361502 225 + 175400573 TTGGATGATAGC--CAGCCTCCTTCC-AGGA-CAGGCTCATGCTTGGGGCTGCCACTGTGGAGGTCGGGGCCCATGGTCTCCAGGAGCATTTGTGAAATCTCCATTTTGCCTGTAAACTGATGGTAGTGCCCATCTCTCACAATCTC--ATTCAAATAGGAACCTCCAGGCCTCTGAATGGCCCGAGCTCATCAGCAGTGACACCACCTCA---CATGTGGAGCCCAAc--------------------------tgagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30595842 225 + 173848474 TTGGATGATAGC--CAGCCTCCTTCC-AGGA-CAGGCTCATGCTTGGGGCTGCCACTGTGGAGGTCGGGGCCCATGGTCTCCAGGAGCATTTGTGAAATCTCCATTTTGCCTGTAAACTGATGGTAGTGCCCATCTCTCACAATCTC--ATTCAAATAGGAACCTCCAGGCCTCTGAATGGCCCGAGCTCATCAGCAGTGACACCACCTCA---CATGTGGAGCCCAGc--------------------------tgagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     302919 225 +   2037526 TTGGATGATAGC--CAGCCTCCTTCC-AGGA-CAGGCTCATGCTTGGGGCTGCCACTGTGGAGGTCGGGGCCCATGGTCTCCGGGAGCATTTGTGAAATCTCCATTTTGCCTGTAAACTGATGGTAGTGCCCATCTCTCACAATCTC--ATTAAAATAGGATCCTCCAGGCCTCTGAATGGCCCGAGCTCATCAGCAGTGACACCACCTCA---CATGTGGAGCCCAGc--------------------------tgagt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74968885 225 + 122973662 TTGGACAATAGC--CAGCCTCCTTCC-AGGA-CAGGCTCATGCTTGGGGCTGCCACTGTGGAGGTCGGGGCCCATGGTCTCCAGGAGCATTTGTGAAATCTCCATTTTGCCTGTGAACTGATGGTAGTGCCCATCTCTCACAATCTC--ATTAAAATAGGATTCTCCAGGCCTCTGAATGGCCTGAGCTTATCAGCAGTGACGCCACCTCA---CATGTGGAGCCCAGC--------------------------TGAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30847589 225 + 172585720 TTGGACAATGGT--CAGCCCCCTTCT-AGGA-CAGGCTCATGCTTGGGGCTGCCACTGTGGAGGTCGGGGCCCATGGTATCCAGGACCATTTGTGAAATCTCCATTTTGCCTGTGAACTGACGGTAGTGCCCATCTCTCATAGTCTC--ATTAAAATAGGATCCTCCAGGCCTCTGAATGGCCCGAGCTCATCAGCAGTGACGCCACCTCA---CATATGGAGCCCAAc--------------------------tgagc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30137076 225 - 170955103 TTGGACAACGGT--CAGCCCCCTTCT-AGGA-CAGGCTCATGCTTGGGGCTGCCACTGTGGAGGTCGGGGCCCATGGTCTCCAGGACCATTTGTGAAATCTCCATTTTGCCTGTGAACTGACAGTAGTGCCCATCTCTCATAATCTC--ATTAAAATAGGATCCTCCAGGCCTCTGAATGGCCTGAGCTCATCAGCAGTGACGCCACCTCA---CATATGGAGCCCAAC--------------------------TGAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     386300 225 +   1495729 TTGGACAACGGT--CAGCCCCCTTCT-AGGA-CAGGCTCATGCTTGGGGCTGCCACTGTGGAGGTCGGGTCCCATGGTCTCCAGGACCATTTGTGAAATCTCCATTTTGCCTGTGAACTGACGGTAGTGCCCATCTCTCATAGTCTC--ATTAAAATAGGATCCTCCAGGCCTCTGAATGGCTTGAGCTCATCAGCAGTGACGCCACCTCA---CATATGGAGCCCAAc--------------------------tgagc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     488010 225 -    863181 TTGGACAATGGT--CAGCCCCCTTCT-AGGA-CAGGCTCATGCTTGGGGCTGCCACTGTGGAGGTCAGGGCGCATGGTCTCCAGGACCATTTGTGAAATCTCCATTTTGCCTGTGAACTGACAGTAGTGCCCATCTCTCATAATCTC--ATTAAAATAGGATCCTCCAGGCCTCTGAATGGCCTGAGCTCATCAGCAGTGACGCCACCTCA---CATATGGAGCCCAAc--------------------------tgagc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29636603 225 -  71996105 TTGGACAATGGT--CAGCCCCCTTCT-AGGA-CAGGCTCATGCTTGGGGCTGCCACTGTGGAGGTCGGGGCCCATGGTCTCCAGGACCATTTGTGAAATCTCCATTTTGCCTGTGAACTGACGGTAGTGCCCATCTCTCATAATCTC--ATTAAAATAGGATCCTCCAGGCCTCTGAATGGCCCGAGCTCATCAGCAGTGACGCCACCTCA---CATATGGAGCCCAAC--------------------------TGAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     366545 225 -    735854 TTGGACAATGGT--CAGCCCCCTTCT-AGGA-CAGGCTCATGCTTGGGGCTGCCACTGTGGAGGTCGGGGCGCATGGTCTCCAGGACCATTTGTGAAATCTCCATTTTGCCTGTGAACTGACAGTAGTGCCCATCTCTCATAATCTC--ATTAAAATAGGATCCTCCAGGCCTCTGAATGGCCTGAGCTCATCAGCAGTGACGCCACCTCA---CATATGGAGCCCAAc--------------------------tgagc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     274982 225 -   1829203 TTGGACAATGGT--CAGCCCCCTTCT-AGGA-CAGGCTCATGCTTGGGGCTGCCACTGTGGAGGTCGGGGCCCATGGTCTCCAGGACTATTTGTGAAATCTCCATTTTGCCTGTGAACTGACAGTAGTGCCCATCTCTCATAATCTC--ATTAAAATAGGATCCTCCAGGCCTCTGAATGGCCCGAGCTCATCAGCAGTGACGCCACCTCA---CATATGGAGCCCAAc--------------------------tgagc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30476173 224 + 171630274 TTGGATGATAGC--CAGCCTCCTTCC-AGGA-CAGGCTCATGCTTGTGGCTGCCACTGCAGAGGTCAGGGTCCATGGTCTCCAGGACTATTTGTGAGATCTCCA-TTTGCCTGTGAACTGATGGTAGTGCCCTTCTCTCGCAATCTC--ATTAAAATAGGATCCTCCAAGGATCTGGATGGCCCGAGCTCACCAGTGGTGACCCCACCTCA---CATATGGAGCCCAGC--------------------------TGAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           282175 224 +    515838 TTGGATGACAGC--CAGCCTCCTTCC-AGGA-CAGGCTGATGCTTGTGGCTGCCAGTGCAGAGGTCAGGGTCCACGGTCTCCAGGACTATTTTTGAGATCTCCG-TTTGCCTGTGAACTGATGGTAGTGCCCTTCTTTCGCTATCTC--ATTCAAGTAGGATCCTCCAAGGATCTGGATGACCCGAGCTCACCAGTGATGACCGCATCTCA---CATATGGAGCCCAGc--------------------------tgagc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     911359 224 -   1771730 TTGGATGACAGC--CAGCCTCCTTCC-AGGA-CAGGCTCATGCTTGTGGCTGCCACTGCAGAGGTCAGGGTCCATGGTCTCCAGGACTATTTGTAAGATCTTCA-TTTGCCTGTGAACTGATGGTAGTGCCCTTCTCTCGCACTCTC--ATTAAAATAGGATCCTCCAAGGATCTGGATGGCCCGAGCTCACCAGTGATGACCCCACCTCA---CATATGGAGCCCAGc--------------------------tgagc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      92380 224 -    486031 TTGGATGATAGC--CAGCCTCCTTCC-AGGA-CAGGCTCATGCTTGTGGCTGCCACTGCAGAGGTCAGGGTCCATGGTCTCCAGGACTATTTGTGAGATCTCCA-TTTGCCTGTGAACTGATGGTAGTGCCCTTCTCTCGCAATCTC--ATTAAAATAGGATCCTCCAAGGATCTGGATGGCCCGAGCTCACCAGTGATGACCCCACCTCA---CATACGGAGCCCAGc--------------------------tgagc
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           322350 256 +  18854210 TTGGATAATAGCCGCAGCCTCCTTCC-TGAA-TCAGGTGATGGGTGGGCCTGCCACTGTGGCAGTCAGAATCCATGATCTCCAGGACCATTTGCAAGGTCACCATTTTACCTGTGGACTGGTGGTAGTGCCCACATCTCATGATCTCATATTAAAATGGGAGAGCCCAGACATCTGAACGGCATGAGCCCACCAGTGGTGATGCCACCTCAG--CACAGTGAGCCCAGCAGGTGCATTGAAAGGAACATTCCTCTTGAGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58104933 186 -  94987271 TGGGACA-------TAATCTCCTTCCTAAGC-CAGACTTGAGCTTGTGGCTCCCACTGCTGTGACCAG--------------------ACATTTCAGATCTCCA-TATAACTGTGTGCTGATGATTGCACCTACTGCCCATGGTCTC--GT--------GGGCATCGAAACATCTGGATGA---AAG---AGCAG-AGTGAGCCCACCTCAG--CTTATGGAGTTTGGC--------------------------AGGTT
i mm10.chr17               C 0 I 23
s dasNov3.JH567297            37849 221 +     53444 -TGGACAATGGCCACATCCTCCTCCT-GGAACCAGGCTCA--CATGTGGTTCCCACTACCGAGGTCAAGGTCCCTGATCTCCTGCA-CATTTGTGAGATGTCTG-TTTGTCTGTAAACTGCTGGGAGTACACACCTCTCACAATCTCCTATGAAAATGGAAGCTCCCAGGTATC----CAGCAGGAGCTCACCAGTGGAGACACCGTCTCAGCACATGTTGGG---AGG--------------------------AAAGT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e proCoq1.NW_012149775v1     185216 248 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I

a score=505980.000000
s hg38.chr6_GL000254v2_alt  1492297 40 +   4827813 ---TCCTG-------CAGTACTTGTTGTCTGTACCACTCAC-CTGGCACTT
s panTro5.chr6             30361727 40 + 175400573 ---tcctg-------cggtacttgttgtctgtaccactcac-ctggcactt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30596067 40 + 173848474 ---tcctg-------cagtacttgttgtctgtaccactcac-ctggcactt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     303144 40 +   2037526 ---tcctg-------cagtacttgttgtctgtaccactcac-ctggcactt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74969110 40 + 122973662 ---TCCTG-------CAGTACTTGTTGTCTGTTCCACTCAC-CTGGCACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30847814 40 + 172585720 ---tcctg-------caatacttgttgtctgcaccaatcac-ctggcactt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30137301 40 - 170955103 ---TCCTG-------CAATACTTGTTGTCTGCACCAATCAC-CTGGCACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     386525 40 +   1495729 ---tcctg-------caatacttgttgtctgcaccaatcac-ctggcactt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     488235 40 -    863181 ---tcctg-------caatacttgttgtctgcaccaatcac-ctggcactt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29636828 40 -  71996105 ---TCCTG-------CAATACTTGTTGTCTGCACCAATCAC-CTGGCACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     366770 40 -    735854 ---tcctg-------caatacttgttgtctgcaccaatcac-ctggcactt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     275207 40 -   1829203 ---tcctg-------taatacttgttgtctgcaccaatcac-ctggcactt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30476397 40 + 171630274 ---TCCTG-------CAGTACTTGTTGTCTGTACCACTTGC-CTGGCATTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           282399 40 +    515838 ---tcctg-------cagtacttattgtatgtaccacttgc-ctggcattt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     911583 40 -   1771730 ---tcctg-------cagtacttgttgtctgtaccacttgc-ctggcattt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      92604 40 -    486031 ---tcctg-------cagtacttgttgtctgtaccacttgc-ctggcattt
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     185464 40 -   1411461 ---TCCTG-------TAGCACCTGTTGTCTCTACCACTCAC-CTGGCACTT
i proCoq1.NW_012149775v1   I 248 I 1600
s otoGar3.GL873550           322606 40 +  18854210 ---TCCCG-------TAACATCTGTTGTCTGCGCCACTCAC-CCAACACTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58105142 38 -  94987271 ---TCTGA-------TAGAACCTCCTGTTTGTACAGCCCACACTGACC---
i mm10.chr17               I 23 C 0
s dasNov3.JH567297            38070 50 +     53444 TCCTTCTGAGCACTCCACCACCCGTCATCTGTACCTCTCAG-TTGGCACTT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e canFam3.chr35            26348219 196 +  26524999 I

a score=2031590.000000
s hg38.chr6_GL000254v2_alt  1492337 184 +   4827813 ATTTATTATTGTtgtggaagacagactcaaagacagcctccct--tcgtgatcctcacctcttggaat----------tcatgc---ccttgtttggtcccctccccttgagtgtaagtgggatctgtgacttgcttctaatcaatggaataaggcaaaggtgatagggtgtcactctggcaactgtgttgcattgtat
s panTro5.chr6             30361767 184 + 175400573 atttattattgttgtggaagacagactcaaagacagcctccct--tcgtgatcctcacctcttggaat----------tcatgc---ccttgtttggtcccctccccttgagtgtaagtgggatctgtgacttgcttctaatcaatggaataaggcaaaggtgatagggtgtcactctggcaactgtgttgcattgtat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30596107 184 + 173848474 atttattattgttgtggaagacagactcaaagacagcctccct--tcgtgatcctcacctcttggaat----------tcatgc---ccttgtttggtcccctccccttgagtgtaagtgggatctgtgacttgcttctaatcaatggaataaggcaaaagtgatagggtgtcactctggcaactgtgttgcattgtat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     303184 184 +   2037526 atttattattgttgtggaagacagactcaaaaacagcctccct--tcgtgatcctcacctcttggaat----------tcatgc---ccttgtttggtcccctccccttgagtgtaagtgggatctgtgacttgcttctaatcaatggaataaggcaaaggtgatagggtgtcactctggcaactgtgttgcattgtat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74969150 184 + 122973662 ATTTATTATTGCtgtggaagacaaactcaaagccagcctccct--tcatgatcctcacctcttggaat----------tcttgc---ccttgtttggtcccctccccttgagtgtaagtgggatctgtgacttgcttctaatcaacagaataaggcaaaggtgatagggtgtcactctggcaactgtgttgcattgtat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30847854 184 + 172585720 atttattattgttgtggaagacagactcaaagacagccttcct--tcgtgatcctcacctcttagaat----------taatgc---ccttgttcggtccccttcccttgagtgtaagtgggatctgtgacttacttcaaatcaatagaataaggcaaaagtgatagggtgtcactccggcaactgtgttgcattgtat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30137341 184 - 170955103 ATTTATTATTGTtgtggaagatagactcaaagacagcctccct--tcgtgatcctcacctcttagaat----------taatgc---ccttgttcggtcccctccccttgagtgtaagtgggatctgtgactcacttcaaatcaatagaataaggcaaaagtgatagggtgtcactctggcaactgtgttgcattgtat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     386565 184 +   1495729 atttattattgttgtggaagatagactcaaagacagcctccct--tcgtgatcctcacctcttagaat----------taatgc---ccttgttcagtcccctccccttgagtgtaagtgggatctgtgactcacttcaaatcaatagaataaggcaaaagtgatagggtgtcactctggcaactgtgttgcattgtat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     488275 184 -    863181 atttattattgttgtggaagacagactcaaagacaacctccct--tcgtgatcctcacctcttagaat----------taatgc---ccttgttcggtcccctccccttgagtgtaagtgggatctgtgactcacttcaaatcaatagaataaggcaaaagtgatcgggtgtcactctggcaactgtgttgcattgtat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29636868 184 -  71996105 ATTTATGATTGTtgtggaagatagtctcaaagacggcctccct--tcgtgatcctcacctcttagaat----------taatgc---ccttgttcggtcccctccccttgagtgtaagtgggatctgtgactcacttcaaatcaatagaataaggcaaaagtgatagggtgtcactctggcaactgtgttgcattgtat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     366810 184 -    735854 atttattattgTtgtggaagacagactcaaagacaacctccct--tcgtgatcctcacctcttagaat----------taatgc---ccttgttcggtcccctccccttgagtgtaagtgggatctgtgactcacttcaaatcaatagaataaggcaaaagtgatcgggtgtcactctggcaactgtgttgcattgtat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     275247 184 -   1829203 atttattattgTtgtggaagacagactcaaagacagcctccct--tcgtgatcctcacctcttagaat----------gaatgc---ccttgttcggtcccctccccttgagtgtaagtgggatctgtgactcacttcaaatcaatagaataaggcaaaggtgatagggtgtcactccggcaactgtgttgcattgtat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30476437 183 + 171630274 ACTCATTATTGTtgtggaagatagactcaaagacagcccccct--tggtgatcctcacctcttggtat----------taatgc---ccttgtttggtaccctttccttgaatgtgaacaggatctgtgacttgtttctaatcaatgcaatatggcaaaggtgatagggtgtcactctggcaactgcgtt-cattgtat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           282439 183 +    515838 attcattattgttgtggaagataaactcaaagacagcccccct--tggtgatcctcacctcttggtat----------taatgc---ccttgtgtggtaccctttccttgaatgtgagtgggatctgtgacttgtttctaatcaatggaatacggcaaaggtgatagagtgtcactctggtaactgtgtt-cattgtat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     911623 183 -   1771730 agtcattattgTtgtggaagatagactcaaagacagcacccct--tggtgatcctcgcctcttggtat----------taatgc---ccttgtgtggtaccctttccttgaatatgagtaggatctgtgacttgtttctaatcaatggaatatggcaaaggggatagggtgtcactctggcaactatgtt-cattgtat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      92644 196 -    486031 attcattattgTtgtggaggatagactcaaagacatcccccct--cggtgatcctctcctcttggtttggtcccaaggtgatcctcactttgttcggtccccttcccttgagtgtgagtaggatctgtgacttgtttctaatcaatggaatatggcaaaggtgatagggtgtcactctggcaactgtgtt-cattgtat
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           322646 179 +  18854210 AAGCATTATTGCtgtgacagatggactcagagacatccaccc----catgagccttgcct-ttggtat----------ttgtgc---cc-catgtagtcccttccccttcagtgtgagtgagatctgtgacttgcttcttatcaatggaacatggcaaaggtgatggggtgtccctccggagactgtgttgc-tcgaat
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58105180 164 -  94987271 ATTCATTATGACtgttgcatgcagacttgagggtgatttccacagtcctcaccctcatgttcaggtac----------ttgtaa---ctttg----------tcctctggagaatgagtgccatcagtgacttgcttctcattaaaggaatatagcagaagtaatgaaggtcaACTCTAGTGGCCAT------------
i mm10.chr17               C 0 C 0
s dasNov3.JH567297            38120 175 +     53444 ATTTATCACTG-tggggtggacagagtccagg--------tgt--cccaggtccttgcctccaggtgc----------ccatcc---ccttgcatcaccttctctcctcaagtgtgggaaggacttgtgacttgcttctagccaagagtatatgttaatggcaatggcatgtcattcctttgattaggttatgttaaat
i dasNov3.JH567297         C 0 I 3157
e micMur3.chr6               367744 4591 + 123392446 I
e proCoq1.NW_012149775v1     185504 1600 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I

a score=642617.000000
s hg38.chr6_GL000254v2_alt  1492521  65 +   4827813 agaactcctccttgctggcccacccttt-t-agagcccct------------------------------------------------------cctaggagccaaga--------------gcagcttccagcc-------
s panTro5.chr6             30361951  65 + 175400573 agaactcctccttgctggcccacccttt-t-agagcccct------------------------------------------------------cctaggagccaaga--------------gcagcttccaacc-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30596291  65 + 173848474 agaactcctccttgctggcccacccttt-t-agagcccct------------------------------------------------------cctaggagccaaga--------------gcagcttccaacc-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     303368  65 +   2037526 agaactcctccttgctggcccacccttt-t-agagcccct------------------------------------------------------cctaggagccaaga--------------gcagcttccagcc-------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74969334  64 + 122973662 agagctcctccttgc-ggccgacccatt-t-agagcccct------------------------------------------------------cctaggagccaaga--------------gcagcctccagcc-------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30848038  65 + 172585720 agaactcctccttgctggcctacccatt-t-agagcccct------------------------------------------------------cctaggaaccaaga--------------gcagtctccagcc-------
i rheMac8.chr4             C 0 I 4
s macFas5.chr4             30137525  65 - 170955103 agaactcctccttgctGGCCTGCCCATT-T-agagcccct------------------------------------------------------cctaggagccaaga--------------gcagtctccagcc-------
i macFas5.chr4             C 0 I 4
s macNem1.NW_012012100v1     386749  65 +   1495729 agaactcctccttgctggcctgcccatt-t-agagcccct------------------------------------------------------cctaggagccaaga--------------gcagtctccagcc-------
i macNem1.NW_012012100v1   C 0 I 4
s cerAty1.NW_012002535v1     488459  65 -    863181 agaactcctccttgctggcctgcccatt-t-agagcccct------------------------------------------------------cctaggagccaaga--------------gcagtctccagcc-------
i cerAty1.NW_012002535v1   C 0 I 4
s chlSab2.chr17            29637052  65 -  71996105 agaactcctccttgctGGCCTGCCCATT-T-agagcccct------------------------------------------------------tctaggagccaaga--------------gcagtctccagcc-------
i chlSab2.chr17            C 0 I 4
s manLeu1.NW_012107142v1     366994  65 -    735854 agaactcctccttgctGGCCTGCCCATT-T-agagcccct------------------------------------------------------cctaggagccaaga--------------gcagtctccagcc-------
i manLeu1.NW_012107142v1   C 0 I 2903
s colAng1.NW_012115577v1     275431  65 -   1829203 agaactcctccttgctggcctacccatt-t-agagcccct------------------------------------------------------cctaggagccaaga--------------gcagtctccagcc-------
i colAng1.NW_012115577v1   C 0 I 7
s calJac3.chr4             30476620  65 + 171630274 aggactcctcctcgttggccaactcact-t-agggcccct------------------------------------------------------tctaggagccagga--------------gcagcctccagcc-------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           282622  65 +    515838 aagactcctcctcgttggccgatgcact-t-ggagcccct------------------------------------------------------cctaggagccaaga--------------gcagcctccagcc-------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     911806  65 -   1771730 tggactcctcctcattggccaactcact-t-agagcccct------------------------------------------------------cctaggagccaaga--------------gcagcctccagcc-------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      92840  65 -    486031 aggactccttcttgttggccaactcact-t-agagcccct------------------------------------------------------cctaggagccaaga--------------gcagcctccagcc-------
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           322825 132 +  18854210 tggactcctctttcctagcagactcactct-agagactcttctttctgtcttgatgag--tgagtggccccatggcaaggacctgcaggcaacgcctaggagccaagaacaacctacagtctgcagcctccagcc-------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58105344 118 -  94987271 -AGACGCTTTCTTGCTGATAGACACATT-CAAgagactct--------ttttgctaaagttggggacgctgaggggaaagatttgtgggcagctcctagtttcctaga--------------gcggcctccatcttctgggt
i mm10.chr17               C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e dasNov3.JH567297            38295 3157 +     53444 I
e proCoq1.NW_012149775v1     185504 1600 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I

a score=911622.000000
s hg38.chr6_GL000254v2_alt  1492586  85 +   4827813 aa---caacaagcagaggccctcagtcttgtggctgcaagaacctgaattc--------------------tgccaacaacctgagtgagcttggaagcaga-----------ttctt----c
s panTro5.chr6             30362016  85 + 175400573 aa---caacaagcagaggccctcagtcttgtggctgcaagaacctgaattc--------------------tgccaacaacctgagtgagcttggaagcaga-----------ttctt----c
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30596356  85 + 173848474 aa---caacaagcagaggccctcagtcttgtggctgcaagaacctgaattc--------------------tgccaacaacctgagtgagcttggaagcaga-----------ttctt----c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     303433  85 +   2037526 aa---caacaagcagaggccctcagccttgtggctgcaagaacctgaattc--------------------tgccaacaacctgagtgagcttggaagcaga-----------ttctc----c
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74969398  85 + 122973662 aa---caataagcagaggccctcagtcttgtggctgcaagcacctgaattc--------------------tgccaacaacctgagtgagcttggaagcaga-----------ttctt----c
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30848107  88 + 172585720 gccaacaacaagcagaggccctcagtcttgtggctgcaagaacctgaattc--------------------tgccaacaacctgagtgagcttggaagctga-----------ttctt----c
i rheMac8.chr4             I 4 C 0
s macFas5.chr4             30137594  85 - 170955103 gc---caacaagcagaggccctcagtcttgtggctgcaagaacctgaattc--------------------tgccaacaacctgagtgagcttggaagctga-----------ttctt----c
i macFas5.chr4             I 4 C 0
s macNem1.NW_012012100v1     386818  85 +   1495729 gc---caacaagcagaggccctcagtcttgtggctgcaagaacctgaattc--------------------tgccaacaacctgagtgagcttggaagctga-----------ttctt----c
i macNem1.NW_012012100v1   I 4 C 0
s cerAty1.NW_012002535v1     488528  85 -    863181 gc---caacaagcagaggccctcagtcttgtggctgcaagaacttgaattc--------------------tgccaacaacctgagtgagcttgaaagcaga-----------ttctt----c
i cerAty1.NW_012002535v1   I 4 C 0
s chlSab2.chr17            29637121  85 -  71996105 gc---caacaagcagaggccctcagtcttatggctgcaagaacctgaattc--------------------tgccaacaacctgagtgagcttggaagcaga-----------ttctt----c
i chlSab2.chr17            I 4 C 0
s manLeu1.NW_012107142v1     369962  85 -    735854 gc---caacaagcagaggccctcagtcttgtggctgcaagaacttgagttc--------------------tgccaacaacctgagtgagcttggaagcaga-----------ttctt----c
i manLeu1.NW_012107142v1   I 2903 C 0
s colAng1.NW_012115577v1     275503  85 -   1829203 ---aacaacaagcagaggccctcagtcttgtggctgcaagaacctgaattc--------------------tgccaacaatctgagtgagcttggaagcaga-----------ttctt----c
i colAng1.NW_012115577v1   I 7 C 0
s calJac3.chr4             30476685  85 + 171630274 ---aacaagaagcagaggccctcagtcttgtggctgcaagaacttgaattc--------------------tgccaacaacccaagtgaacttggaagcaga-----------ttctt----c
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           282687  85 +    515838 ---aacaagaagcagaggccctccgtcttgtggctgcaagaacttgaattc--------------------tgccaacaacctgagtgaccttggaagcaga-----------ttctt----c
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     911871  85 -   1771730 ---aacaagaagcagaggccctcagtcttgtggctgcaagaacttgaattc--------------------tgccaacaacccaagtgaccttggaagcagg-----------ttctt----c
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      92905  85 -    486031 ---aacaagaagcagaggccctcagtcttgtggctgcaagagcttgaattc--------------------taccaacaacctgagtgatctgggaagcaga-----------ttctt----c
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           322957 120 +  18854210 ---agcaaaaagcagaggctctcaggcttgtggctgcaagaatctaaatcctggctaggcacaatgactcatgcctgtaatcctagcactctggaaggctgaagagggtggattgcctgagct
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58105462  80 -  94987271 ---gacaagaatcagggaacctgggctttacagttgcag-----taaaccc--------------------ttccaccaccacaagtaaagttggaagtaga-----------tactt----c
i mm10.chr17               C 0 I 2
e micMur3.chr6               367744 4591 + 123392446 I
e dasNov3.JH567297            38295 3157 +     53444 I
e proCoq1.NW_012149775v1     185504 1600 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I

a score=281819.000000
s hg38.chr6_GL000254v2_alt  1492671 28 +   4827813 cccaa-------------ctgagccggataagaacctagtc
s panTro5.chr6             30362101 28 + 175400573 cccaa-------------ctgagccggataagaacctagtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30596441 28 + 173848474 cccaa-------------ctgagccggataagaacctagtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     303518 28 +   2037526 cccaa-------------ctgagccggataagaacctagtc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74969483 28 + 122973662 cccag-------------ctgagccggatgagaacctagtc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30848195 28 + 172585720 cccag-------------ctgagccggttgagaacccagtc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30137679 28 - 170955103 cccag-------------ctgagccggttgagaacccagtc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     386903 28 +   1495729 cccag-------------ctgagccggttgagaacccagtc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     488613 28 -    863181 cccag-------------ctgagccggttgagaacccagtc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29637206 28 -  71996105 cccag-------------ctgagccggttgagaacccagtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     370047 28 -    735854 cccag-------------ctgagccggttgagaacccagtc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     275588 28 -   1829203 cccag-------------ctgagccgattgagaacccagtc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30476770 28 + 171630274 cccag-------------atgagccagatgagaacccattt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           282772 28 +    515838 cccag-------------ctgagccagatgagaacccagtt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     911956 28 -   1771730 cccag-------------ctgagccagatgagaacccagtt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      92990 28 -    486031 cccag-------------ctgagccagatgagaacccagtt
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           323077 41 +  18854210 cacaggttcgagactaccctgagccagatggagaccttgtc
i otoGar3.GL873550         C 0 I 457
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542  2 -  94987271 I
e dasNov3.JH567297            38295 3157 +     53444 I
e proCoq1.NW_012149775v1     185504 1600 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I

a score=1058261.000000
s hg38.chr6_GL000254v2_alt  1492699 106 +   4827813 cagccaacaccttgattatagtcttgtgagtacctaagctgaggacccagtgaagctgtgccaaaatttcccacccacagaaacagtgtgacaataaatgtgtgtg
s panTro5.chr6             30362129 106 + 175400573 cagccaacaccttgattatagtcttgtgagtacctaagctgaggacccagtgaagctgtgccaaaatttcccacccacagaaacggtgtgacaataaatgtgtgtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30596469 106 + 173848474 cagccaacaccttgattatagtcttgtgagtacctaagctgaggacccagtgaagctgtgccaaaatttcccacccacagaaacggtgtgacaataaatgtgtgtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     303546 104 +   2037526 cagccaacaccttgattatagtcttgtgagtacctaagctgaggacccagtgaagctgtgccaaaatttcccacccacagaaacggtgtgacaataaa--tgtgtg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74969511 106 + 122973662 cagccaacaccttgattatagtcttgtgagtacctaagctgaggacccagtgaagctgtgccaaaatttctcacccacagaaacggtgcaacaataaatgtgtgtG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30848223 106 + 172585720 cagccaacaccttgattatagtcttgtgagtacctaagctgaggacccagtgaagctgtgccaaaatttctcacccacagaaacggtgagacaaaatatgtgtgtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30137707 106 - 170955103 cagccaacaccttgattatagtcttgtgagtacctaagctgaggacccagtgaagctgtgccaaaatttctcacccacagaaacggcgagacaaaatatgtgtgtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     386931 106 +   1495729 cagccaacaccttgattatagtcttgtgagtacctaagctgaggacccagtgaagctgtgccaaaatttctcacccacagaaacggtgagacaaaatatgtgtgtg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     488641 106 -    863181 cagccaacaccttgattatagtcttgtgagtacctaagctgaggacccagtgaagctgtgccaaaatttctcactcacagaaacggtgagacaaaatatgtgtgtg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29637234 106 -  71996105 cagccaacaccttgattatagtcttgtgagtacctaagctgaggacccagtgaagatgtgccagaatttctcacccacagaaatggtgagacaaaatgtgtgtgtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     370075 106 -    735854 cagccaacaccttgattatagtcttgtgagtacctaagctgaggacccagtgaagctgtgccaaaatttctcactcacagaaacggtgagacaaaatgtgtgtgtg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     275616 106 -   1829203 cagccaacaccttaattacagtcttgtgagtacctaagctgaggacccagtgaagctgtgccaaaatttctcacccacagaaatggtgagacaaaatgtgtgtgtg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30476798 106 + 171630274 cagccaacgccttgatgacagtctcgtgagtccctaagctgaggacccagcaaagctgtaccaaaatttcagacccacagaaactgtgagacaaaaaatgtgtgtg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           282800 106 +    515838 cagccaacaccttgataacagtcttgtgagtccctaagctgaggacccagcaaagctgtgccaaaatttctgacccacagaaactgtgagacaaaaactgtatatg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     911984 106 -   1771730 cagccaacaccttgattatagtcttgtgagtccctaagctgaggacccagcaaagctgtgccaaaatttctgatccacagaaactgtgagacaaaaaatgtgtgtg
i cebCap1.NW_016107755v1   C 0 I 430
s aotNan1.NW_018496901v1      93018 106 -    486031 cagccaacaccttgattacagtcttgtgagtccctaagctgaagacccagcaaagctgtgccaaaatttctgacccacagaaactgtgagacaaaaaatgtgtgtg
i aotNan1.NW_018496901v1   C 0 I 1183
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542   2 -  94987271 I
e dasNov3.JH567297            38295 3157 +     53444 I
e proCoq1.NW_012149775v1     185504 1600 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I
e otoGar3.GL873550           323118 457 +  18854210 I

a score=1336084.000000
s hg38.chr6_GL000254v2_alt  1492805 254 +   4827813 tgttttttt------gttttctgttttcgtttttgagatggaatctcactctgttgcccaggctggagtgcagtggtgtgatgtcggctcactgtaacctctgtctcctaggttcaagcaattctcctgcctcagcctccctaatagctagggattataggcgcccaccaccacacccggctaattttttgtgtttttagtagagacagggtttaaccatgttggccaggctggccttgaacttctgacctcaggtgatc
s panTro5.chr6             30362235 253 + 175400573 tgttttttt------gttttttgttttcgtttttgagatggagtctcactctgttgcccaggctggagtgcggtggtgtgatgtcggctcactgtaacctctgtctcctaggttcaagcaattctcctgcctcagcctccctaatagct-gggattataggcgcccgccaccacacccagctaattttttgtgtttttagtagagacagggtttaaccatgttggccaggctggccttgaacttctgacctcaggtgatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30596575 246 + 173848474 tgtttttt--------gtttttgtttc--gttttgagatggagtctcactctgttgcccaggctggagtgcggtggtgtgatgtcggctcactgtaacctctgtctcctaggttcaagcaattctcctgcctcagcctccctaatagct-gggattataggcgcccgccaccacacccagctaatttt---tgtttttagtagagacagggtttaaccatgttggccaggctggccttgaacttctgacctcaggtgatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     303650 253 +   2037526 tgttttttt------gttttttgttttcgtttttgagatggagtctcactctgttgcccaggctgaagtgcggtggtgcgatatcggctcactgtaacctctgtctcctaggttcaagcaattctcctgcctcagcctccctaatagct-gggattataggcgcccgccaccacacccggctaattttttgtgtttttagtagagacggggtttcaccatgttggccaggctggccttgaacttctgacctcaggtgatc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74969617 252 + 122973662 TGCtttttt------gttttttgtttttgtttttgagatagagcctcactctgtcgcccaggctgaagtgcggtggtgcaatgtcggctcactgcaacctctgtctcctaggttcaagcaattctcctgcctcagcctccctagtagct-gggattataggcacctgccaccaca-ccggctaattttttgtgtttttagtagagactgggtttcaccatgttggccaggctggccttgaacttctgacctcaggtgatc
i nomLeu3.chr1a            C 0 M 296
s rheMac8.chr4             30848329 247 + 172585720 tgtttttgt-------ttttttgtttt-----ttgagatggagtctcactctgtggcccaggctgaagtgcagtggcacgatgttggctcactgcaacctctgtctcccaggttcaagcaattcttctatctcagcctccctagcagct-gggattgtaggcgcctgccaccacacccagctaatcttttgtgttttgggtagagacggggtttcaccatgttggccaggctggccttgaatttctgacctcaggtgatc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30137813 247 - 170955103 tgtttttgt-------ttttttgtttt-----ttgagatggagtctcactctgtggcccaggctgaagtgcagtggcacagtgttggctcactgcaacctctgtctcccaggttcaagcaattcttctatctcagcctccctagcagct-gggattgtaggcgcctgccaccacacccagctaatcttttgtgttttgggtagagatggggtttcaccatgttggccaggctggccttgaatttctgacctcaggtgatc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     387037 247 +   1495729 tgtttttgt-------ttttttgtttt-----ttgagatggagtctcactctgtggcccaggctgaagtgcagtggcacagtgttggctcactgcaacctctgtctcccaggttcaagcaattcttctatctcagcctccctagcagct-gggattgtaggcgcctgccaccacacccagctaatcttttgtgttttgggtagagatggggtttcaccatgttggccaggctggccttgaatttctgacctcaggtgatc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     488747 247 -    863181 tgtgtttgt-------ttttttgtttt-----ttgagatggagtctcactctgtggcccaggctgaagtgcagtggcacagtgttggctcactgcaacctctgtctcccaggttcaagcaactcttctatctcagcctccctagcagct-gggattgtaggcgcctgccaccacactcagctaatcttttgtgttttgggtagagatggggtttcaccatgttggccaggctggccttgaatttctgacctcaggtgatc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29637340 254 -  71996105 tgtgtctgtttttttgttttttgtttt-----ttgagatggagcctcgctctgttgcccaggctgaagtgcagtggcacgatgttggctcactgcaacctctgtctcccaggttcaagcaattcttctatctcagcctccctagcagtt-gggattgtaggcgcctgccaccacacccagctaatcttttgtgttttgggtagagacggggtttcaccatgttggccaggctggccttgaatttctgacctcaggtgatc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     370181 247 -    735854 tgtgtttgt-------ttttttgtttt-----ttgagatggagtctcactctgtggcccaggctgaagtgcagtggcacagtgttggctcactgcaacctctgtctcccaggttcaagcaattcttctatctcagcctccctagcagct-gggattgtaggcgcctgccaccacacccagctaatcttttgtgttttgggtagagacggggtttcaccatgttggccaggctggccttgaatttctgacctcaggtgatc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     275722 254 -   1829203 tgtttttgtttttttgttttttgtttt-----ttgagatggagtctcactctgttgcccaggctgaagtgcagtggcacaatgttggctcactgcaacctctatctcccaggttcaagcaattcttctatctcagcctccctagcagct-gggattgtaggcgcctgccaccacacccagctaatcttttgtgttttgggtagagatggggtttcaccatgttgtccaggctggccttgaatttctgacctcaggtgatc
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542   2 -  94987271 I
e dasNov3.JH567297            38295 3157 +     53444 I
e proCoq1.NW_012149775v1     185504 1600 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I
e saiBol1.JH378341           282906   0 +    515838 C
e otoGar3.GL873550           323118 457 +  18854210 I
e aotNan1.NW_018496901v1      93124 1183 -    486031 I
e cebCap1.NW_016107755v1     912090 430 -   1771730 I
e calJac3.chr4             30476904   0 + 171630274 C

a score=54608.000000
s hg38.chr6_GL000254v2_alt  1493059 12 +   4827813 agcccaccttgg
s panTro5.chr6             30362488 12 + 175400573 agcccaccttgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30596821 12 + 173848474 agcccaccttgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     303903 12 +   2037526 cgcccaccttgg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30848576 12 + 172585720 cgcccaccttgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30138060 12 - 170955103 atcccaccttgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     387284 12 +   1495729 ctcccaccttgg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     488994 12 -    863181 cgcccaccttgg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29637594 12 -  71996105 cgcccaccttgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     370428 12 -    735854 cgcccaccttgg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     275976 12 -   1829203 cgcccaccttgg
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542  2 -  94987271 I
e dasNov3.JH567297            38295 3157 +     53444 I
e proCoq1.NW_012149775v1     185504 1600 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I
e saiBol1.JH378341           282906  0 +    515838 C
e otoGar3.GL873550           323118 457 +  18854210 I
e aotNan1.NW_018496901v1      93124 1183 -    486031 I
e cebCap1.NW_016107755v1     912090 430 -   1771730 I
e calJac3.chr4             30476904  0 + 171630274 C
e nomLeu3.chr1a            74969869 296 + 122973662 M

a score=232468.000000
s hg38.chr6_GL000254v2_alt  1493071 53 +   4827813 cctcccaaaatgctgggattacaggtgtgagccaccgcgcctg----------gccatgtgtt
s panTro5.chr6             30362500 52 + 175400573 cctcccaaaatgctgggattacaggtgtgagccaccgtgcctg----------gccatg-gtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30596833 52 + 173848474 cctcccaaaatgctgggattacaggtgtgagccaccgtgcctg----------gccatg-gtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     303915 53 +   2037526 cctcccaaaatgctgggattacaggtgtgagccaccgctcctg----------gccgtgtgtt
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30848588 53 + 172585720 cctcccaaaatgctgggattacaggcgtgagccactgcccctt----------gccgtgtgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30138072 53 - 170955103 cctcccaaaatgctgggattacaggcgtgagccactgccgctt----------gccatttgtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     387296 53 +   1495729 cctcccaaaatgctgggattacaggcgtgagccactgccgctt----------gccgtttgtt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     489006 53 -    863181 cctcccaaaatgctgggattacaggcgtgagccactgcccctt----------gccgtgtgtt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29637606 53 -  71996105 cctcccaaaatgctgggattacaggcgtgagcccctgcccctt----------gccgtgtgtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     370440 53 -    735854 cctcccaaaatgctgggattacaggcgtgagccactgcccctt----------gccgtgtgtt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     275988 53 -   1829203 cctcccaaaatgctgggattacaggcgtgagccactgtccctg----------gctgtgtgtt
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           323575 62 +  18854210 cctctccaaa-gctatgcccaaatttctgaaccatgggaactgtgagacaataaatatgtgtt
i otoGar3.GL873550         I 457 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542  2 -  94987271 I
e dasNov3.JH567297            38295 3157 +     53444 I
e proCoq1.NW_012149775v1     185504 1600 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I
e saiBol1.JH378341           282906  0 +    515838 C
e aotNan1.NW_018496901v1      93124 1183 -    486031 I
e cebCap1.NW_016107755v1     912090 430 -   1771730 I
e calJac3.chr4             30476904  0 + 171630274 C
e nomLeu3.chr1a            74969869 296 + 122973662 M

a score=428987.000000
s hg38.chr6_GL000254v2_alt  1493124 56 +   4827813 gttataaggcagtaaatttgtggtaatttttgtggagtaatggataatgaatacaA
s panTro5.chr6             30362552 56 + 175400573 gttttaaggcagtaaatttgtggtaatttttgtggagtaatggataatgaatacaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30596885 56 + 173848474 gttttaaggcagtaaatttgtggtaatttttgtggagtaatggataatgaatacaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     303968 56 +   2037526 gttttaaggcagtaaatttgtggtaatttttgtggagtaatggataatgaatacaA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30848641 56 + 172585720 gttttaaggcagtaaatttgtggtaatttttatggagtaatggataatgaatacaA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30138125 56 - 170955103 gttttaaggcagtaaatttgtggtaatttttatggagtaatggataatgaatacaA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     387349 56 +   1495729 gttttaaggcagtaaatttgtggtaatttttatggagtaatggataatgaatacaA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     489059 56 -    863181 gttttaaggcagtaaatttgtggtaatttttatggagtaatggataatgaatacaA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29637659 56 -  71996105 gttttaaggcagtaaatttgtggtaatttttatggagtaatggataatgaatacaA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     370493 56 -    735854 gttttaaggcagtaaatttgtggtaatttttatggagtaatggataatgaatacaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     276041 56 -   1829203 gttttaaggcagtaaatttgtggtaatttttatggagtaatggataatgaatacaA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30476904 56 + 171630274 gttttaaggcaataaatttgtggtaatttttgtggagcaatggataatgaatacaA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           282906 56 +    515838 gtttgaaggcagtaaatttgtggcaatttttacggagccatggataatgaatacaa
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           323637 56 +  18854210 gttttaagacagtaaatttgtggcaatttttagggatcagtagattactaacacCG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542  2 -  94987271 I
e dasNov3.JH567297            38295 3157 +     53444 I
e proCoq1.NW_012149775v1     185504 1600 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I
e aotNan1.NW_018496901v1      93124 1183 -    486031 I
e cebCap1.NW_016107755v1     912090 430 -   1771730 I
e nomLeu3.chr1a            74969869 296 + 122973662 M

a score=2130002.000000
s hg38.chr6_GL000254v2_alt  1493180 284 +   4827813 TTGTATATTAGTCATTTTTGT-ATAAGCCTCACTTctttgggtgagcaggg-at-catattctgtctgtgtcctcatgtctagaacagtgtctggctcatagctggtgtccaataaaattttaaatgtatgtatAAGTGAACTAATAAGAAAGCATAAGGAAGGGCTCTTCTCAATCCTC--TGATTAAAAAGAGCCATCAATTACCTTATAATCAGTATTTATTGAGCCCTTGCCAAAGTAGTCAATACCATACT-------GAGAGGTATAA----GGAATAAAACATGGCCACAATT
s panTro5.chr6             30362608 284 + 175400573 ttgtatattagtcatttttgt-ataagccttacttcattgggtgagcaggg-at-catactctgtctgtgtcctcatgtctagaacagtgtctggctcatagctggtgtcaaataaaattttaaatgtatgtatAAGTGAATTAATAAGAAAGCATAAGGAAAGGCTCTTCTCAATCCTC--TGATTAAAAGGAGCCATCAATTACCTTATaatcagtatttattgagcccttgccaaagtagtcaataccatact-------gagaggtataa----ggaataaaaCATGGCCACAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30596941 284 + 173848474 ttgtatattagtcatttttgt-ataagccttacttcattgggtgagcaggg-at-catactctatctgtgtcctcatgtctagaacagtgtctggctcatagctggtgtcaaataaaattttaaacgtatgtatAAGTGAATTAATAAGAAAGCATAAGGAAAGGCTCTTCTCAATCCTC--TGATTAAAAGGAGCCATCAATTACCTTATaatcagtatttattgagcccttgccaaagtagtcaataccatact-------gagaggtataa----ggaataaaaCATGGCCACAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     304024 284 +   2037526 TTGTATATTAGTCATTTTTGT-ATAAGCCTCACTtctttgggtgagcaggg-at-catactgtgtctgtgtcctcatgtctagaacagtgtctggctcatagctggtgtccagtaaaattttaaatgtatgtatAAGTGAATTAATAAGAAAGCATAAGGAAGGGCTCTTCTCAATCCTC--TGATTAAAAAGAGCCATCAATTACCTTATaatcagtatttattgagcccttgccaaagtagtcaataccatact-------gagaggtataa----ggaataaaaCATGGCCACAATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74970169 285 + 122973662 TTGTATATTAGTCATTTTTGTAATAAGCCTCACTTCTTTGGGTGAGCAGGGTATACATACTCTGTctgtgtcctcatgtctagaacagtgtccggctcatagttcgtgtccaatacaattttaaatgtatgtataaatgaatTAATAAGAAAGCATAAG----GGCTCTTCTCAATCCTC--TGATTAAAAGGAGCCATCAATTACCTTTTAATCAGTATTTATTGAGCTCTTGCCAAAGTAGTCAATACCACACT---------GAGGTATAAACATGGAATAAAACATGGCCACAAGA
i nomLeu3.chr1a            M 296 I 327
s rheMac8.chr4             30848697 280 + 172585720 TTGTATATTAGTCATTTTTGT-ATAAGCCTCACTTCTTTGGGTGAGCAGGC-GT-CATACTCTGTctgtgtcctcatgtctagaacagagtctggctcataattggtgtccaataacattttaaatgtatgtataaatgaatTAATAAGAAAGCATAAA----GGCTCTTCTCAATCCTC--TGATTAAAAGGAGCCATCAATTACCTTTTGCTCagtatttattgagcccttgccaaagtagtcaataccgtact-------gagaggtataa----ggaataaaaCATGGCCACAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30138181 279 - 170955103 TTGTATATTAGTCATTTTTA--ATAAGCCTCACTTCTTTGGGTGAGCAGGC-GT-CACACTCTGTctgtgtcctcatgtctagaacagagtctggctcataattggtgtccaataacattttaaatgtatgtataaatgaatTAATAAGAAAGCATAAA----GGCTCTTCTCAATCCTC--TGATTAAAAGGAGTCATCAATTACCTTTTGCTCAGTATTTATTGAGCCCTTGCCAAAGTAGTCAATACCGTACT-------GAGAGGTATAA----GGAATAAAACATGGCCACAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     387405 279 +   1495729 TTGTATATTAGTCATTTTTA--ATAAGCCTCACTTCTTTGGGTGAGCAGGC-GT-CACACTCTGTctgtgtcctcatgtctagaacagagtctggctcataattggtgtccaataacattttaaatgtatgtataaatgaatTAATAAGAAAGCATAAA----GGCTCTTCTCAATCCTC--TGATTAAAAGAAGTCATCAATTACCTTTTGCTCagtatttattgagcccttcccaaagtagtcaataccgtact-------gagaggtataa----ggaataaaaCATGGCCACAAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     489115 280 -    863181 TTGTATATTAGTCATTTTTGT-ATAAGCCTCACTTCTTTGGGTGAGCAGGC-AT-CATACTCTGTctgtgtcctcatgtctagaacagagtctggctcataattggtgtccaataacattttaaatgtatgtataaatgaatTAATAAGAAAGCATAAA----GGCTCTTCTCAATCCTC--TGATTAAAAGGAGTCATCAATTACCTTTTGCTCagtatttattgagcccttgccaaagtagtcaataccgtact-------gagaggtataa----gaaataaaaCATGGCCACAAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29637715 280 -  71996105 TTGTATATTAGTCATTTTTGT-ATAAGCCTCACTTCTTTGGGTGAGCAGGC-AT-CATACTCTGTctgtgtcctcatgtctagaacagagtctggctcataattggtgtccaataacattttaaatgtatgtataaatgaatTAATAAGAAAGCATAAA----GGCTCTTCTCAATCCTC--TGATTAAAAGGAGTCATCAATTACCTTTTGCTCAGTATTTATTGAGCCCTTGCCAAAGTAGTCAATACCATACT-------GAGAGGTATAA----GGAATAAAACATGGCCACAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     370549 280 -    735854 ttgtatattagtcatttttgt-ataagcctcacttctttgggtgagcaggc-at-catactctgtctgtgtcctcatgtctagaacagagtctggctcataattggtgtccaataacattttaaatgtatgtataaatgaatTAATAAGAAAGCATAAA----GGCTCTTCTCAATCCTC--TGATTAAAAGGAGTCATCAATTACCTTTTGCTCagtatttattgagcccttgccaaagtagtcaataccgtact-------gagaggtataa----gaaataaaaCATGGCCACAAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     276097 277 -   1829203 TTGTATATCAGTCATTTTTGT-ATAAGCCTCACTTCTTTGGGTGAGCAGGC-AT-CATACTCTGTctgtgtcctcatgtctagaacagagtctggctcataattggtgtccaataacattttaaatgtatgtataaatgaatTAATAAGAA---ATAAA----GGCTCTTCTCAATCCTC--TGATTAAAAGGAGCCATCAATTACCTTTTGCTCagtatttattgagcccttgccaaagtagtcaataccgtatt-------gagaggtataa----ggaataaaaCATGGCCACAAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30476960 278 + 171630274 CTATACATTAGTCATTTCTGC-ATAAGCCTCACTTctttgggtgagcaggg-ac-catac--tgtctgtgtcctcgtgtctagaacagtgcctggctcacagttggtgttcaataaaagtttaaatgtatgtataaatgaatTAATTAGAAAGCAAAGG----GGCCCTTCTTAATCCTC--TGTTTAAAAGGAGCCATCAATGACCATTTAATTAGTATTTATTGAGCCCTCGATGAAGTAGTCAATACCATACT-------GTGAGGTATAA----GGAATAAAACATGGCCACAAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           282962 277 +    515838 ctatatatcagtcattcatgc-ataagcctcacttttttgggtgagcaggg-ac-catac--tgtctgtgtcctcatgtctagaacagtgcctggctcacagttggtgttcaataaaattttaaatgtatgtatAAACGAATTAATTAGAAAGCAAAAG----GGCCCTTCTTAAACCTC--TGTTTAAAAGGAGCCATCAATTACCATTTAATTAGAACTTA-TGAACCCCCaaagaaagaagcaaaaacaaaac-------gggaaggaaaa----agaaaaaaaaaaggccaaaaaa
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           323693 248 +  18854210 TTGTATATCAGTAATTTGTAC-ATATGTCTCACTTCTTTGGGTGA-------AG-------------------------------CAGTGCCTGACTCATCCTTGGTGTCTAGTCAAATTTTAAATGGATGCATAAATGAATTAA-AAGAAAGTCTAAG----GGCCCTTGGTGATCTTCCTTATTTAAAGGGAGCCATCAATCATCTTTATACTAG-ATTTACTGAGCCCTTGATGAAGTAGTCAGTACTATACTAGGCACTGAGGGATATAA----AGAATAAAACATGCCCACA---
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542   2 -  94987271 I
e dasNov3.JH567297            38295 3157 +     53444 I
e proCoq1.NW_012149775v1     185504 1600 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I
e aotNan1.NW_018496901v1      93124 1183 -    486031 I
e cebCap1.NW_016107755v1     912090 430 -   1771730 I

a score=822881.000000
s hg38.chr6_GL000254v2_alt  1493464 96 +   4827813 ATAAAACAAgccacgtggtggtgcaaagagtgaaaactacagggtcagacttgagtttaggtctcggtcctgacacctaatgcctctgtaaccttg
s panTro5.chr6             30362892 96 + 175400573 ATAAAACAAgccacgtggtggtgcaaagagtgaaaactacagggtcagacttgagtttaggtctcggtcctgacacctaatgcctctgtaaccttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30597225 96 + 173848474 ATAAAACAAgccacgtggtggtgcaaagagtgaaaactacagggtcagacttgagtttaggtctcggtcctgacacctaatgcctctgtaaccttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     304308 96 +   2037526 ATAAAACAAgccacgtggtggtgcgaagagtgaaaactacagggtcagacttgagtttaggtctcggtcctgacacctaatgcctctgtaaccttg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74970781 96 + 122973662 ATAGAACAAgccacgtggtggtgcaaagaatgaaaactacagggtcagacttgagtttaggtctgggtcctgacacctaatgcctctgtaaccttg
i nomLeu3.chr1a            I 327 C 0
s rheMac8.chr4             30848977 96 + 172585720 ATAAAACAAgccacgtggtggtgcaaagagtgaaagctacagagtcagacttgagtttaggtctgggtcctgacacctaatgcctctgtaaccttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30138460 96 - 170955103 ATAAAACAAgccacgtggtggtgcaaagagtgaaagctacagagtcagacttgagtttaggtctgggtcctgacacctaatgcctctgtaaccttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     387684 96 +   1495729 ATAAAACAAgccacgtggtggtgcaaagagtgaaagctacagagtcagacttgagtttaggtctgggtcctgacacctaatgcctctgtaaccttg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     489395 96 -    863181 ATAAAACAAgccacgtggtggtgcaaagagtgaaagctacagagtcagacttgagtttaggtctgggtcctgacacctaacgcctctgtaaccttg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29637995 96 -  71996105 ATAAAACAAGCCACGTATTGgtgcaaagagtgaaagctacagagtcagacttgagtttaggtctgggtcctgacacctaacgcctctgtaaccttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     370829 96 -    735854 ATAAAACaagccacgtggtggtgcaaagagtgaaagctacagagtcagacttgagtttaggtctgggtcctgacacctaacgcctctgtaaccttg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     276374 95 -   1829203 ATAAAACCA-CCAcgtggtggtgcaaagagtgaaagctacagagtcagacttgagtttaggtctgggtcttgacacctaacgcctctgtaaccttg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30477238 96 + 171630274 ATAAAACaagccatgtggtggtgcaaagagtaaaaactacagagtcagacttgagtttaggtctcggtcctgacaactaattcctctgtaaccttg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           283239 96 +    515838 aaaaaaaaaaCCAAGGGGGGGGGCAaagagtaaaaactacggagtcagacttgagtttaggtctcggtcctgacaactaattcctctgtaaccttg
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           323941 94 +  18854210 --AGATGGTACTATgtggtagtgcaaagagtgaaaactcaggagccagacttgagttcaggtcctagtcccaacacctaaaacctctgtaaccctg
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542  2 -  94987271 I
e dasNov3.JH567297            38295 3157 +     53444 I
e proCoq1.NW_012149775v1     185504 1600 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I
e aotNan1.NW_018496901v1      93124 1183 -    486031 I
e cebCap1.NW_016107755v1     912090 430 -   1771730 I

a score=1084472.000000
s hg38.chr6_GL000254v2_alt  1493560 189 +   4827813 ggcaaa-ttacttagcctctctgaacctctgtactcccccctctaaaataagggttatggtacctgtggcctgggattgttgtcaaaattaaata----------catgctgagtgtctgctaaagtgtctaa---aacgtaaacattcaa----ATATGTTCATTTTATC------TTTTTTTTTTTGGTGTATTCTGGCTTTATTGTT----Att
s panTro5.chr6             30362988 190 + 175400573 ggcaaa-ttacttagcctctctgaacctctgtactcccccctctaaaataagggttatggtacctgtggcctgggattgttgtcaaaattaaata----------catgctgagtgtctgctaaagtgtctaa---aacgtaaacattcaG----ATATGTTCATTTTATC-----TTTTTTTTTTTTGGTGTATTCTGGCTTTAttgtt----ttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30597321 188 + 173848474 ggcaaa-ttacttagcctctctgaacctctgtactcccccctctaaaataagggttatggtacctgtggcctgggattgttgtcaaaattaaata----------catgctgagtgtctgctaaagtgtctaa---aatgtaaacattcag----atatgttcattttatt------TATTTTTTTTTGGTGTATTCTGGCTTTAttgtt-----tt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     304404 191 +   2037526 ggcaaa-ttacttagcctctctgaacctctgtact-ccccctctaaaataagggttatggtacctgtggcctgggattgttgtcaaaattaaata----------catgctgagtgtctgctaaagtgtctaa---aacgtaaacattcaG----ATATGTTCAttttatc--tttttttttttttttGGTGTATTCTGGCTTTATTGGt-----tt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74970877 184 + 122973662 ggcaaa-ttacttagcctgtctgaacctctgtactcccccctctaaaataa-ggttatggtacctgtggcctgggattgttgtcagaattaaata----------catgctgagtgtctgctaaagtgtctaa---aatgtaaacattcag----atatgttcattttatC--------TTTTTTTTTGGTGCATTCTGGCTTTAttgt------tt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30849073 199 + 172585720 ggcaaa-ttacttagcctctctgaacctctgtactcccccctctaaaataagggtaatggtatctgtgacctgggattgctgtcagaattaaatA----------CATGCTGGGTGTCTGCTAAAGTGTCTAA---AACGTAAACATTCAG----GTATGTTCATTTCATCtttttttttttttttttggtgtattctggctttctttttattttta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30138556 203 - 170955103 ggcaaa-ttacttagcctctctgaacctctgtactcccccctctaaaataagggtaatggtatctgtgacctgggattgctgtcagaattaaatA----------CATGCTGGGTGTCTGCTAAAGTGTCTAA---AACGTAAACATTCAGGTATGTATGTTCATTTCATCtttttttttttttttttggtgtattctggctttctttttattttta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     387780 197 +   1495729 ggcaaa-ttacttagcctctctgaacctctgtactcccccctctaaaataagggtaatggtatctgtgacctgggattgctgtcagaattaaatA----------CATGCTGGGTGTCTGCTAAAGTGTCTAA---AACGTAAACATTCAG----GTATGTTCATTTCATC--tttttttttttttttggtgtattctggctttctttttatttttg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     489491 188 -    863181 ggcaaa---------cctctctgaacctctgtactcccccctctaaaataagggtaatggtatctgtgacctgggattgctgtcagaattaaatA----------CAGGCTGGGTGTCTGCTAAAGTGTCTAA---AACGTAAACATTCAG----GTATGTTCATTTCATC---TTTTTTTTTTTTTTGGTGTATTCTGGCTTTCTTTTTAtttttg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29638091 196 -  71996105 ggcaaa-ttacttagcctctctgaacctctgtactcccccctctaaaataagggtaatggtatctgtgacctgggattgctgtcagaattaaata----------catgctgggtgtctgctaaagtgtctaa---aatgtaaaCATTCAG----GTATGTTCATTTCATC---ttttttttttttttggtgtattctggctttctttttatttttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     370925 188 -    735854 ggcaaa---------cctctctgaacctctgtactcccccctctaaaataagggtaatggtatctgtgacctgggattgctgtcagaattaaata----------caggctgggtgtctgctaaagtgtctaa---aacgtaaaCATTCAG----GTATGTTCATTTCATC---TTTTTTTTTTTTTTGGTGTATTCTGGCTTTCTTTTTAtttttg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     276469 195 -   1829203 ggcaaa-ttacttagcctctctgaacctctgtactcccccctcgaaaataagggtaatggtatctgtgacctgggattgctgtcagaattaaatA----------CATGCTGGGTGTCTGCTAAAGTGTCTAA---AACGTAAACATTCAG----GTACGTTCATTTCATC----TTTTTTTTTTTTTGGTGTATTCTGGCTTTCTTTTTAtttttt
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           324035 202 +  18854210 ggcaagtttacatagcttctctgaa-ctctgcactactccctctataaggaggataatggtacccatggcctaggattgttgtcaaaattaaatatcatattatgcaagctaggtgtctgctgcagtacctaacatactatcatcattcaa----atatgttaactTAGTC------tttttttttgagacagagtctcactttgttgccctt----
i otoGar3.GL873550         C 0 I 128
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542   2 -  94987271 I
e dasNov3.JH567297            38295 3157 +     53444 I
e proCoq1.NW_012149775v1     185504 1600 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I
e saiBol1.JH378341           283335   0 +    515838 C
e aotNan1.NW_018496901v1      93124 1183 -    486031 I
e cebCap1.NW_016107755v1     912090 430 -   1771730 I
e calJac3.chr4             30477334   0 + 171630274 C

a score=1350917.000000
s hg38.chr6_GL000254v2_alt  1493749 246 +   4827813 ttttttaattatactttaagttctagggtacatgtgcacaatgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaacttgtcatttacat---tgggtatttctcctaatgctatccctcccc--------cctccccccaccccaaaacaggccctggtgtgtgatgttccccaccc----tgtgtccaagtgatctcattgttcaattcccaccaatgagtgagaacatgcggtgtt
s panTro5.chr6             30363178 246 + 175400573 tttttaaattatactttaagttctagggtacatgtgcacaatgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaacttgtcatttacat---tgggtatttctcctaatgctatccctcccc--------cctccccccaccccaaaacaggccctggtgtgtgatgttccccaccc----tgtgtccaagtgttctcattgttcaattcccaccaatgagtgagaacatgcggtgtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30597509 246 + 173848474 tttttaaattatactttaagttctagggtacatgtgcacaatgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaacttgtcatttacat---tgggtatttctcctaatgctatccctcccc--------cctccccccaccccaaaacaggccctggtgtgtgatgttccccaccc----tgtgtccaagtgttctcattgttcaattcccaccaatgagtgagaacatgcggtgtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     304595 246 +   2037526 tttttaaattatactttaagttctagggtacatgtgcacaatgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaacttgtcatttacat---tgggtatttctcctaatgctatccctcccc--------cctccccccaccccaaaacaggccctggtgtgtgatgttccccaccc----tgtgtccatgtgttctcattgttcaattcccaccaatgagtgagaacatgcggtgtt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74971061 246 + 122973662 ttttttaattatactttaagttctagggtacatgtgcacaatgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaacttgtcatttacat---taggtatttctcctaatgctgtccctcccc--------gctccccttaccccacaacaggccctggtgtgtgatgttccccaccc----tgtgtccgagtgttcttattgttcaattcccaccaatgagtgagaacacgcggtgtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30849272 249 + 172585720 tatttttattatactttaagttctagggtacatgtgcacaacgtgcaggtttgttacatatgtttacatgtgtcatgttggtgtgctgcacccattaactcatcatttacat---taggtatttctcctaatgctatccct-ccc--------cctccccccacctcacgacaggccccggtgtgtgatgttccccaccctgtgtgtgtccaagtgttctcattgttcaattcccatcagtgagtgagaacatgcggtgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30138759 250 - 170955103 tttttttattatactttaagttctagggtacatgtgcacaacatgcaggtttgttacatatgtgtacatgtgtcatgttggtgtgctgcacccattaactcgtcgtttacat---taggtatttctcctaatgctatccctcccc--------cctccccccaccccacgacaggccccggtgtgtgatgttccccaccctgtgtgtgtccaagtgttctcattgttcaattcccatcagtgagtgagaacatgcggtgtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     387977 247 +   1495729 tttttttattatactttaagttctagggtacatgtgcacaacatgcaggtttgttacatatgtgtacatgtgtcatgttggtgtgctgcacccattaactcatcatttacat---taggtatttctcctaatgctatccct-ccc--------cctccccccaccccacgacaggcccc--tgtgtgatgttccccaccctgtgtgtgtccaagtgttctcattgttcaattcccatcagtgagtgagaacatgcggtgtt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     489679 249 -    863181 tttttttattatactttaagttctagggttcatgtgcacaacatgcaggtttgttacatatgtgtacatgtgtcatgttggtgtgctgcacccattaactcgtcatttacat---taggtatttctcctaatgctatccct-ccc--------cctccccccaccccacgacaggccccggtgtgtgatgttccccaccctgtgtgtgtccaagagttctcattgttcaattcccatcagtgagtgagaacatgcggtgtt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29638287 249 -  71996105 tttttttattatactttaggttctagggttcatgtgcacaacatgcaggtttgttacatatgtgtacatgtgtcatgttggtgtgctgcacccattaactcgtcatttacat---taggtatttctcctaatgctatccct-ccc--------cctccccccaccccatgacaggccccggtgtgtgatgttccccaccctgtgtgtgtccaagggttctcattgttcaatttccatcagtgagtgagaacatgcggtgtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     371113 249 -    735854 tttttttattatactttaagttctagggttcatgtgcacaacatgcaggtttgttacatatgtgtacatgtgtcatgttggtgtgctgcacccattaactcgtcatttacat---taggtatttctcctaatgctatccct-ccc--------cctccccccaccccacgacaggccccggtgtgtgatgttccccaccctgtgtgtgtccaagagttctcattgttcaattcccatcagtgagtgagaacatgcggtgtt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     276664 244 -   1829203 attttttattatactttaagttctagagtacatgtgcacaacatgcaggtttgttacatatgtgtacatgtgtca---tggtgtg-------------ctcatcatttacattactaggtatttctcctaatgctatccct-cccccctccctcctccccccaccccacgacaggccctggtgtgtgatgttccccaacctgtgtgtgtccaagtgttctcattgttcaattcccatcagtgagtgagaacatgcggtgtt
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542   2 -  94987271 I
e dasNov3.JH567297            38295 3157 +     53444 I
e proCoq1.NW_012149775v1     185504 1600 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I
e saiBol1.JH378341           283335   0 +    515838 C
e otoGar3.GL873550           324237 128 +  18854210 I
e aotNan1.NW_018496901v1      93124 1183 -    486031 I
e cebCap1.NW_016107755v1     912090 430 -   1771730 I
e calJac3.chr4             30477334   0 + 171630274 C

a score=1144792.000000
s hg38.chr6_GL000254v2_alt  1493995 212 +   4827813 tggttttctgtccttgcgatagtttg--ctgagaatgatggtttccagc--ttcaacca---tgtccctaaaaaggacatgaacttatcctttc---tcatTTCATCTTTTTTTAAAAAA-ACCACTTCCCCTTTTGAAATGAAATATGGAATGAT-AAAAAAATTTTAAATAAATTCCACT-TCACCATCCAGAAGTTTATAATTTAGCTGTGGAACTATGACT
s panTro5.chr6             30363424 212 + 175400573 tggttttctgtccttgcgatagtttg--ctgagaatgatggtttccagc--ttcaacca---tgtccctacaaaggacatgaactcatcctttt---tcatTTCATCTTTTTTTAAAAAA-ACCACTTCCGCTTTTGAAATGAAATATggaatgat-aaaaaaattttaaataaattccact-tcaccatccagaagtttataatttagctgtggaactgcgact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30597755 211 + 173848474 tggttttctgtccttgcgatagtttg--ctgagaatgatggtttccagc--ttcaacca---tgtccctacaaaggacatgaactcatcctttt---tcatTTCATCTTTTTTTAAAAAA-ACCACTTCCCCTTTTGAAATGAAATATggaatgat--aaaaaattttaaataaattccact-tcaccatccagaagtttataatttagctgtggaactgcgact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     304841 212 +   2037526 tggttttctgtccttgcgatagtttg--ctgagaatgatggtttccagc--ttcaacca---tgtccctccaaaggacatgaactcattctttt---tcatTAAATCTTTTTTTTAAAAA-ACCACTTCCCCTTTTGAAATGAAATATggaatgat-aaaaaatttttaaataaattccact-tcaccatccagaagtttataatttagctgtggaactatgact
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74971307 211 + 122973662 tggttttctgtccttgtgatagtttg--ctgagaatgatggtttccagc--ttcatcca---tgtccctacaaaggacatgaactcatcctttt---tcatTTCATCTTTTTTAAAAAAA-ACTACTTCCCCTTTTGAAATGAAATATGGAATgat--aaaaaaatttaaataaattccact-tcaccatccagaagtttataatttagctgtggaactacgact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30849521 212 + 172585720 tggttttctgtccttgtgatagctgg--ctgagaatgatggtttccagc--ttcatcga---tgtccctacaaaggacatgaacgcatcctttt---tcatttcatcttttttttAAAAA-GCCACTTCCCCTTTTGAAATGAAATATGGAATGAT-TTAAAAAATTCAAATAAATTCCACT-TCAccatccagaagtttataatttagctgtggaactatgact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30139009 210 - 170955103 tggttttctgtccttgcgatagctgg--ctgagaatgatggtttccagc--ttcatcga---tgtccctacaaaggacatgaactcatcctttt---tcatttcatcttttttttAAAAA-GCT-CTTCCCCTTTTGAAATGAAATATGGAATGA--TAAAAAAATTCAAATAAATTCCACT-TCACCATCCAGAAGTTTATAATTTAGTTGTGGAACTATGACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     388224 212 +   1495729 tggttttctgtccttgcgatagctgg--ctgagaatgatggtttccagc--ttcatcga---tgtccctacaaaggacatgaacgcatcctttt---tcatttcatcttttttttAAAAA-GCCACTTCCCCTTTTGAAATGAAATATggaatgat-ttaaaaaattcaaataaattccact-tcaccatccagaagtttataatttagctgtggaactacgact
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     489928 212 -    863181 tggttttctgtccttgcgatagctgg--ctgagaatgatggtttccagc--ttcatcga---tgtccctacaaaggacatgaacgcatcctttt---tcatTTCATCTTTTTTTAAAAAA-TCCACTTCCCCTTTTGAAATGAAATATggaatgat-taaaaaaattcaaataaattccact-tccccatccagaagtttataatttagctgtggaactacaact
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29638536 212 -  71996105 tggttttctgtccttgcgatagctgg--ctgagaatgatggtttccagc--ttcatcga---tgtccctacaaaggacatgaacacatcctttt---tcatttcatcttttttttAAAAA-GCCATTTCCCCTTTTGAAATGAAATATGGAATGAT-AAAAAAAATTCAAATAAATTCCACT-TCACCATCCAGAAGTTTATAATTTAGCTGTGGAACTTTGACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     371362 212 -    735854 tggttttctgtccttgcgatagctgg--ctgagaatgatggtttccagc--ttcattga---tgtccctacaaaggacatgaacgcatcctttt---tCCTTTCATCTTTTTTTAAAAAA-TCCACTTCCCCTTTTGAAATGAAATATggaatgat-taaaaaaattcaaataaattccact-tccccatccagaagtttataatttagctgtggaactacaact
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     276908 214 -   1829203 tggttttctgtccttgcgatagctgg--ctgagaatgatggtttccagc--ttcatcga---tgtctctacaaaggatatgaactcatcctttt---tcatTTCATCTTTTTTTAAAAAAGGCTACTTCCCCTTTTGAAATGAAACATggaatgataaaaaaaaattccaataaattccact-tccccatccagaagtttatagtttagctgtggaactatgact
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           324365 174 +  18854210 tggtct--tgttcttgct-taggttgttctcaaactcatgaatttaggcaatccacccaccttgccctcccagagtgc-tgagcttacagctatgagccactgtg----------------cccagTTCAGTCTTC---------------------TAAAAAATTGCA--------CCACCACCCCCATCCACAAA-GTATAATCTAGATGTGGAACCAGGAC-
i otoGar3.GL873550         I 128 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542   2 -  94987271 I
e dasNov3.JH567297            38295 3157 +     53444 I
e proCoq1.NW_012149775v1     185504 1600 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I
e saiBol1.JH378341           283335   0 +    515838 C
e aotNan1.NW_018496901v1      93124 1183 -    486031 I
e cebCap1.NW_016107755v1     912090 430 -   1771730 I
e calJac3.chr4             30477334   0 + 171630274 C

a score=1523885.000000
s hg38.chr6_GL000254v2_alt  1494207 233 +   4827813 AAACAGATACAGAAAAAGAAGAGAGCGTGTAACTGCACTGAATTAGGTATCACAGaggctaagtgccctgggaattcagaggaaagaaac-agcgagcctgggaaagtcagggtaggttttgtgggggaggtggggattggacaagtgggagaggaaggtgagaacattctaggtcacaataaccacatgaatgaaagcatagaggtaggaaaaagccac--------ggcacc----------------------------------------tttgtagg
s panTro5.chr6             30363636 233 + 175400573 agacagatacagaataagaagagagtgtgtaactgcactgaattaggtatcacagaggctaagtgccctgggaattcagaggaaagaaac-agcgagcctgggaaagtcagggtaggttttgtgggggaggtggggattggacaagtgggaggggaaggtgagaacattctaggtcacaataaccacatgaatgaaagcatagaggtaggaaaaagccac--------ggcacc----------------------------------------tttgtagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30597966 233 + 173848474 agacagatacagaataagaagagagtgtgtaactgcactgaattaggtatcacagaggctaagtgccctgggaattcagaggaaagaaac-agcgagcctgggaaagtcagggtaggttttgtgggggaggtggggattggacaagtgggaggggaaggtgagaacattctaggtcacaataaccacatgaatgaaagcatagaggtaggaaaaagccac--------ggcacc----------------------------------------tttgtagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     305053 233 +   2037526 aaacagatacagaataagaagagagcgtgtaactgcactgaattaggtatcacagaggctaagtgccctgggaattcagatgaaagaaac-agcgagcctgggaaagtcagggtaggttttgtgggggaggtggggattggacaagtgggagaggaaggtgagaacattctaggtcacaataaccacatgaatgaaagcatagaggtaggaaaaagccac--------ggcacc----------------------------------------tttgtagg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74971518 231 + 122973662 aaacagatacagaataagaagaga--gtgtaactgcactgaattaggtatcacaggggctaagtgctctgggaattcagaggaaagacac-agcgagcctgggaaagttagggtaggttttgtgggggaggtggggattggacaagtgggagaggaaggtgagaacattctaggtcatgataaccacatgaatgaaagcatagaggtaggaaaaagccac--------agcacc----------------------------------------tttgtagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30849733 233 + 172585720 aaacacatacagaataagaagagagtgtgtaactgcactgaactaggtatcacaagggctaagtgctctgggaattcagaggaaagacac-agagaggctgggaaagtcagggtaggttttgtgggggaggtggggattggacaagtgggagaggaaggtgagaacattctcggtcatggtaaccacatgaatgaaagcatagaggtaggaaaaagtcac--------ggcacc----------------------------------------tttgtagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30139219 233 - 170955103 AAACACATACAGAATAAGAAGAGAGTGTGTAACTGCACTGAATTAGGTATCACAGGGGCTAAGTGCTCTGGGAATTCAGAGGAAAGACAC-AGAGAGGCTGGGAAAGTCAGGGTAGgttttgtgggggaggtggggattggacaagtgggagaggaaggtgagaacattctaggtcatgataaccacatgaatgaaagcatagaggtaggaaaaagccac--------ggcacc----------------------------------------tttgtagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     388436 233 +   1495729 aaacacatacagaataagaagagagtgtgtaactgcactgaattaggtatcacaggggctaagtgctctgggaattcagaggaaagacac-agagaggctgggaaagtcagggtaggttttgtgggggaggtggggattggacaagtgggagaggaaggtgagaacattctcggtcatggtaaccacatgaatgaaagcatagaggtaggaaaaagtcac--------ggcacc----------------------------------------tttgtagg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     490140 233 -    863181 aaacacatacagaataagaagagagtgtgtaactgcactgaattaggtatcacgggggctaagtgctctgggaattcagaggaaagacac-agagaggctgggaaagtcagggtaggttttgtgggggaggtggggattggacaagtgggagaggaaggtgagaacattctaggtcatgataaccacatgaatgaaagcatagaggtaggaaaaagccac--------ggcacc----------------------------------------tttgtagg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29638748 233 -  71996105 AAACACATACAGAATAAGAAGAGAGTGTGTAACTGCACTGAATTAGGTATCACAGGGGCTAAgtgctctgggaattcagaggaaagacac-agagaggctgggaaagtcagggtaggttttgtgggggaggtggggattggacaagtgggagaggaaggtgagaacattctaggtcatgataaccaaatgaatgaaagcatagaggtaggaaaaagccac--------ggcacc----------------------------------------tttgtagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     371574 233 -    735854 aaacacatacagaataagaagagagtgtgtaactgcactgaattaggtatcacgggggctaagtgctctgggaattcagaggaaagacac-agagaggctgggaaagtcagggtaggttttgtgggggaggtggggactggacaagtgggagaggaaggtgagaacattctaggtcatgataaccacatgaatgaaagcatagaggtaggaaaaagccac--------ggcacc----------------------------------------tttgtagg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     277122 233 -   1829203 aaacacatacagaataagaagagagtgtgtaactgcactgaattaggtatcacaggggctaagtgctctgggaattcagaggaaagacac-agagaggctgggaaagtcagggtaggttttgtgggggaggtggggattggacaagtgggagaggaaggtgagaacattctaggtcatgataaccacatgaatgaaagcatagaggtaggaaaaagccac--------ggcacc----------------------------------------tttgtagg
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           324539 268 +  18854210 AAACTCAAATGGAATAGTACGAGAATGTGTGTCTGC-----ATTAAGTGTCACAGATTCTAGGCACTCTTGGAATTCAGAGAAGAAACCCAAGTAAGGCTGGAAAAGTCAGGATAGTTTTTGTAGGGGACCTGGGGATTGGACAGGTGAGA---------GAGAACATTCCATGTCAGGATAACCACACAGATGAAAGCAGGAAGGTAGGAAAAAGCCACAGCATGGTggcacctgtatctcagtgggtagggcgctggccacatacacccaggtttgcagg
i otoGar3.GL873550         C 0 I 258
s dasNov3.JH567297            41452 187 +     53444 aaatgaataaataaaaaaaaaaAAGAGTGTGATTG-----------GTAAAACTGAA-----------TGGGAACTCCAAGGAGAGAAGTGAATGAGTTTGAGAAAGTCA-------CCTCCTGGGGGAGGT-GGAATTTTCCAGGTGGTAAAGA-----GGGAGCATTTCAGGTCAGGATAACCATGCAAAGGAAAGAGAAGAGG-AGGGCTAAGCTGC--------ATG---------------------------------------------------
i dasNov3.JH567297         I 3157 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542   2 -  94987271 I
e proCoq1.NW_012149775v1     185504 1600 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I
e saiBol1.JH378341           283335   0 +    515838 C
e aotNan1.NW_018496901v1      93124 1183 -    486031 I
e cebCap1.NW_016107755v1     912090 430 -   1771730 I
e calJac3.chr4             30477334   0 + 171630274 C

a score=1980439.000000
s hg38.chr6_GL000254v2_alt  1494440 293 +   4827813 agtgtgaggaaaccaacctggttaggctggaatgttcaggaatggggaa--gacgagA--AGTCAACAGGCTAAATGGATGACACCAA-GACATAGTG--------AGGTTTCTGAGTCAGGAATGAAGGGAGAA-GTGGTGTTTAATGAAAGCCAGTCTGGATCGTTTGCACAAGAAGGACTG-GGACAGAGAGTTG-GGGGCTGGAAGGAGAGGGGAGGAGAAAGAGCCTAGTGTAGATGTTCAG-AAAAAAGGTATAGTTATTTGGCAAGAAGCTGCAGATCTCAGAGAAACATAAGATCCCAAATC
s panTro5.chr6             30363869 293 + 175400573 agtgtgaggaaaccaacctggttaggctggaatgttcaggaatggggaa--gacgaga--agtcaacaggctaaatggatGACACCAA-GACATAGTG--------AGGTTTCTGAGTCAGGAATGAAGGGAGAA-GTGGTGTTTAATGAAAGCCAGTCTGGATCGTTTGCACAAGAAGGACTG-GGACAGAGAGTTG-GGGGCTGGAAGGAGAGGGGAGGAGAAAGAGCCTAGTGTAGATGTTCAG-AAAAAAGGTATAGTTATTTGGCAAGAAGCTGCAGATCTCAGAGAAACATAAGATCCCAAATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30598199 293 + 173848474 agtgtgaggaaaccaacctggttaggctggaacgttcaggaatggggaa--GACGAGA--AGTCAACAGGCTAAACGGATGACACCAA-GACATAGTG--------AGGTTTCTGAGTCAGGAATGAAGGGAGAA-GTGGTGTTTAATGAAAGCCAGTCTGGATCGTTTGCACAAGAAGGACTG-GGACAGAGAGTTG-GGGGCTGGAAGGAGAGGGGAGGAGAAAGAGCCTAGTGTAGATGTTCAG-AAAAAAGGTATAGTTATTTGGCAAGAAGCTGCAGATCTCAGAGAAACATAAGATCCCAAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     305286 292 +   2037526 agtgtgaggaaaccaacctggttaggctggaatgttcaggaatggggaa--GACGAGA--AGTCAACAGTCTAAATGGATGACACCAA-GACATAGTG--------AGGTTTCTGAGTCAGGAATGAAGGGAGAA-GTGGTGTTTAATGAAAGCCAGTCTGGATCGTTTGCACAAGAAGGACTG-GGACAGAGAGTTG-GGGGCTGGAAGGAGAGGGGAGGAGAAAGAGCCTAGTGTAGATGTTCAG-AAAAAAGGTATAGTTA-TTGGCAAGAAGCTGCAGATCTCAGAGAAACATAAGACCCCAAATC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74971749 294 + 122973662 agtgtgaggaatccgacctggttagGCTGGAATGTTCAGGAATGGGGAA--GACCAGA--AGTCAACAGGCTAAATGGATGACACCAA-GACATAGTG--------AGGTTTCTGAGTCAGGAATGAAGGGAGAA-GTGATGCTTAATGAAAGCCAGTCTGGATCGTTTGCACAAGAAGGACTG-GGGCAGAGAGTTG-GGGGTTGGAAGGAGAGGGGAGGAGAAAGAGCCTAGTGTGGATGTTCAGAAAAAAAGGTATAGTTATTTGGCAAGAAGCTGCAGATCTCAGAGAAACATAAGATCCCAAATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30849966 293 + 172585720 agtgtgaggaaactgacctggttaggctggaatgttcaggaatggggaa--gaccaga--agtcaacagactaaatggatGACACCAA-GATATAGTG--------AAGTTTCTGAGTCAGGAATGAAAGGAGAA-GTGGTGTTTAAGGAAAGCCAATCTGGATCATTTGCACAAGAAGTACTG-GGGCAGAGAGTTG-GGGGTTGGAAGGAGAGGGAAGGAGAAAGAGCCTAGTGTAGATGTTCAG-AAAAAATGTATAGTTATTTGGCGCGAAGCTGCAGATCTCAGAGAAATATAAGATCCCAAATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30139452 293 - 170955103 agtgtgaggaAACTGACCTGGTTAGGCTGGAATGTTCAGGAATGGGGAA--GACCAGA--AGTCAACAGACTAAATGGATGACACCAA-GACATAGTG--------AGGTTTCTGAGTCAGGAATGAAGGGAGAA-GTGGTGTTTAAGGAAAGCCAGTCTGGATCGTTTGCACAAGAAGTACTG-GGGCAGAGAGTTG-GGGGTTGGAAGGAGAGGGGAGGAGAAAGAGCCTAGTGTAGATGTTCAG-AAAAAATGTATAGTTATTTGGCGCGAAGCTGCAGATCTCAGAGAAATATAAGATCCCAAATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     388669 293 +   1495729 agtgtgaggaaactgacctggttaggctggaatgttcaggaatggggaa--gaccaga--agtcaacagactaaatggatGACACCAA-GATATAGTG--------AAGTTTCTGAGTCAGGAATGAAAGGAGAA-GTGGTGTTTAAGGAAAGCCAATCTGGATCATTTGCACAAGAAGTACTG-GGGCAGAGAGTTG-GGGGTTGGAAGGAGAGAGGAGGAGAAAGAGCCTGCTGTAGATGTTCAG-AAAAAAGATATAGTTATTTGGCACAAAGCTGCAGATCTCAGAGAAACATAAGATCCCAAATC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     490373 293 -    863181 agtgtgaggaaaccgacctggttaggctggaatgttcaggaatggggaa--gaccaga--agtcaacagactaaatggatGACACCAA-GACATAGTG--------AAGTTTCTGAGTCAGGAATGAAGGGAGAA-GTGGTGTTTAAGGAAAGCCAGTCTGGATCGTTTGCACAAGAAGTACTG-GGGCAGAGAGTTG-GGGGTTGGAAGGAGAGGGGAGGAGAAAGAGCCTAGTGTAGATGTTCAG-AAAAAATGTATAGTTATTTGGCGCGAAGCTGCAGATCTCAGAGAAATATAAGATCCCAAATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29638981 293 -  71996105 agtgtgaggaAACCGACCTGGTTAGGCTGGAGTGTTCAGGAATGGGGAA--GACCAGA--AGTCAACAGACTAAATGGATGACACCAA-GACATAGTG--------AGGTTTCTGAGTCAGGAATGAAGGGAGAA-GTGGTGTTTAAGGAAAGCCAGTCTGGATCGTTTGCACAAGAAGTACTG-GGGCAGAGAGTTG-GGGGTTGGAAAGAGAGGGAAGGAGAAAGAGCCTAGTGTAGATGTTCAG-AAAAAATGTATAGTTATTTGGCACGAAGCTGCAGATCTCAGAGAAATATAAGATCCCAAATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     371807 293 -    735854 agtgtgaggaaaccgacctggttaggctggaatgttcaggaatggggaa--gaccaga--agtcaacagactaaatggatGACACCAA-GACATAGTG--------AAGTTTCTGAGTCAGGAATGAAGGGAGAA-GTGGTGTTTAAGGAAAGCCAGTCTGGATCGTTTGCACAAGAAGTACTG-GGGCAGAGAGTTG-GGGGTTGGAAGGAGAGGGGAGGAGAAAGAGCCTAGTGTAGATGTTCAG-AAAAAATGTATAGTTATTTGGCGCGAAGCTGCAGATCTCAGAGAAATATAAGATCCCAAATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     277355 293 -   1829203 agtgtgaggaaaccgacctggttaggctggaatgttcaggaatggggaa--gaccaga--agtcaacaggctaaatggatGACACCAA-GACATAGTG--------AGGTTTCTGAGTCAGGAATGAAGGGAGAA-GTGATGTTTAAGGAAAGCCAGTCTGGATCGTTTGCACAAGAAGTACTG-GGGCAGAGAGTTG-GGGGTTGGAAGGAGAGGGGAGGAGAAAGAGCCTGCCGTAGATGTTCAG-AAAAAAGGTATAGTTATTTGGCACGAAGCTGCAGATCTCAGAGAAACATAAGATCCCAAATC
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           325065 292 +  18854210 AGTGTGAGGAAACTGATCCAGTTAGTTTAGAATTTTCCAGGATGGGAAA--GACTAGA--AGTCTACAGGATGGATGGATAGTACCACTGACAAAGTGAGTCATCAAGGTTTTTGAGTAAGTAGTGAAGCAGAAA-ATAGTGTTTAAGAAAAACCAGTTTGGAAGCTTTGTCCAAGATGGACGG-GGGCAG-GAATTG-GGGGTTG----GAGTGAGGAAGAGAAAGAGTCTAGTGTTCATG------GAAAAAGGTGTAGTTGCTAGGCAGGAAGCTGTAGATCTCAGAGAAACATGAGACCCCAAATC
i otoGar3.GL873550         I 258 I 888
s dasNov3.JH567297            41639 292 +     53444 TGTGTAATGA-----GTGTGGTTAGTGTGGAAGGTTCAGGAATGGGCAAAGGACTAGATGAGCTGA-GGGTTAGACAGGCGGCTCCAG-GACACAGGA-AGCATCAAAGAATTTGAGACAGGAGTGAAGGGACAAGGTGGTGATTAAGGGAAG-CAGCTAAGA-----TGAGCAGGATGGCCTGAGAGCAGAGAGCTGTGAGGTTGGA--GGGAGGTGGAGAAAGAGAGCCTGGTGCAGATGCTCAG-AAGAAGCCAGTGGTTATTAAGCAGGAGACGGCAGGTCTCACAGGTACAAGAGG-CACAAGCC
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542   2 -  94987271 I
e proCoq1.NW_012149775v1     185504 1600 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I
e saiBol1.JH378341           283335   0 +    515838 C
e aotNan1.NW_018496901v1      93124 1183 -    486031 I
e cebCap1.NW_016107755v1     912090 430 -   1771730 I
e calJac3.chr4             30477334   0 + 171630274 C

a score=8281.000000
s hg38.chr6_GL000254v2_alt  1494733 1 +   4827813 T
s panTro5.chr6             30364162 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30598492 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     305578 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74972043 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30850259 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30139745 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     388962 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     490666 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29639274 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     372100 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     277648 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           326245 1 +  18854210 T
i otoGar3.GL873550         I 888 C 0
s dasNov3.JH567297            41931 1 +     53444 T
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542 2 -  94987271 I
e proCoq1.NW_012149775v1     185504 1600 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I
e saiBol1.JH378341           283335 0 +    515838 C
e aotNan1.NW_018496901v1      93124 1183 -    486031 I
e cebCap1.NW_016107755v1     912090 430 -   1771730 I
e calJac3.chr4             30477334 0 + 171630274 C

a score=167103.000000
s hg38.chr6_GL000254v2_alt  1494734 20 +   4827813 AAGAGCAAGACATTAGCCAA
s panTro5.chr6             30364163 20 + 175400573 AAGAGCAAGACATTAGCCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30598493 20 + 173848474 AAGAGCAAGACATTAGCCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     305579 20 +   2037526 AAGAGCAAGACATTAGCCAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74972044 20 + 122973662 AAGAGCAAGACATTAGCCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30850260 20 + 172585720 AAGAGCAAGACATTAGCCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30139746 20 - 170955103 AAGAGCAAGACATTAGCCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     388963 20 +   1495729 AAGAGCAAGACATTAGCCAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     490667 20 -    863181 AAGAGCAAGACATTAGCCAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29639275 20 -  71996105 AAGAGCAAGACATTAGCCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     372101 20 -    735854 AAGAGCAAGACATTAGCCAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     277649 20 -   1829203 AAGAGCAAGACATTAGCCAA
i colAng1.NW_012115577v1   C 0 C 0
s proCoq1.NW_012149775v1     187104 20 -   1411461 AAGAACAAGACATTAGCCAA
i proCoq1.NW_012149775v1   I 1600 C 0
s otoGar3.GL873550           326246 20 +  18854210 AAGAACTAGACATTAGCCAA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            41932 19 +     53444 ATGAAGAAGATGCCAGCTA-
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542  2 -  94987271 I
e canFam3.chr35            26348219 196 +  26524999 I
e saiBol1.JH378341           283335  0 +    515838 C
e aotNan1.NW_018496901v1      93124 1183 -    486031 I
e cebCap1.NW_016107755v1     912090 430 -   1771730 I
e calJac3.chr4             30477334  0 + 171630274 C

a score=897455.000000
s hg38.chr6_GL000254v2_alt  1494754 82 +   4827813 GGAAAGAA----CACCCCTGAAAGTGACAGCTAGCAATACCTGCATCCCAGATGGAGTTAAT-G-------------TCACCAAGAGAACTTGTACTAGG
s panTro5.chr6             30364183 82 + 175400573 GGAAAGAA----CACCCCTGAAAGTGACAGCTAGCAATTCCTGCATCCCAGATGGAGTTAAT-G-------------TCACCAAGAGAACTTGTACTAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30598513 82 + 173848474 GGAAAGAA----CACCCCTGAAAGTGACAGCTAGCAATTCCTGCATCCCAGATGGAGTTAAT-G-------------TCACCAAGAGAACTTGTACTAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     305599 82 +   2037526 GGAAAGAA----CACCCCTGAAAGTGACAGCTAGCAATTCCTGCATCCCAGATGGAGTTAAT-G-------------TCACCAAGAGAACTTGTACTAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74972064 82 + 122973662 GGAAAGAA----CACCCCTGAAGGTGACAGCTAGCAATTCCTGCATCCCAGAGGGAGTTAAT-G-------------TCACCAAGAGAACTTGTACCAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30850280 82 + 172585720 GGAAAGAA----CAGCCCTGAAGGTGACAGCTAGCAATTCCTGCATCCCAGATGGAGTTAAT-G-------------TCACCAAGAGAACTTGTACCAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30139766 82 - 170955103 GGAAAGAA----CAGCCCTGAAGGTGACAGCTAGCAATTCCTGCATCCCAGATGGAGTTAAT-G-------------TCACCAAGAGAACTTGTACCAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     388983 82 +   1495729 GGAAAGAA----CACCCCTGAAGGTGACAGCTAGCAATTCCTGCATCCCAGATGGAGTTAAT-G-------------TCACCAAGAGAACTTGTACCAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     490687 82 -    863181 GGAAAGAA----CACCCCTGAAGGTGACAGCTAGCAATTCCTGCATCCCAGATGGAGTTAAT-G-------------TCACCAAGAGAACTTGTACCAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29639295 82 -  71996105 GGAAAGAA----CACCCCTGAAGGTGACAGCTAGCAATTCCTGCATCCCAGATGGAGTTAAT-G-------------TCACCAAGAGAACTTGTACCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     372121 82 -    735854 GGAAAGAA----CACCCCTGAAGGTGACAGCTAGCAATTCCTGCATCCCAGATGGAGTTAAT-G-------------TCACCAAGAGAACTTGTACCAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     277669 82 -   1829203 GGAAAGAA----CACCCCTGAAGGTGACAGCTAGCAATTCCTGCATCCCAGATGGAGTTAAT-G-------------TCACCAAGAGAACTTGTACCAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30477334 81 + 171630274 ggaaagAA----CACCCCTGAA-GTGACAGCTAGCAGTTCCTGCATCCCAGCTGAAGCTAAT-G-------------TCACCAAGAGAACTTGTACCAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           283335 81 +    515838 ggaaagAA----CACCCCCGAA-GTGACAACTAGCAGTTCCTGCATCCCAGCTGAAGCTAAT-G-------------TCACCAACAGAACTTGTACCAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     912520 81 -   1771730 ggaaagAA----CACCCCTGAA-GTGGCAACTAGCAGTTCCTGCATCCCAGCTGAAGCTAAT-G-------------TCAACAACAGAACTTGTACCAGG
i cebCap1.NW_016107755v1   I 430 C 0
s proCoq1.NW_012149775v1     187124 80 -   1411461 GGAAAGAA----CACTCCTAAAGGTGACGGCTAACAATGC-TGCATCCCAGGCGGGGCTAAT-G-------------TCACA-AGAGAACATGTACCAGG
i proCoq1.NW_012149775v1   C 0 I 189
s otoGar3.GL873550           326266 87 +  18854210 GAAAGGAACATTCACTCCTGAAGGTGACAGCTAAAAATCCTTGCACCCCAGGTGGGGCTAATCC-------------TTGCACAGAGAACTTGTACCAGG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            41951 89 +     53444 --GCCCGA----CACCCCTGAG-GTGGTGGCCAG-AATTGCTGCACCCCACATGGG--CAGT-GCCATGCTGAGTACTCATCCAGAAGTCTCACACTGGG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542  2 -  94987271 I
e canFam3.chr35            26348219 196 +  26524999 I
e aotNan1.NW_018496901v1      93124 1183 -    486031 I

a score=1662381.000000
s hg38.chr6_GL000254v2_alt  1494836 178 +   4827813 AGTAGGAGG---CTGACAGCCCCCAGGG----TCTCTCCTCAGGAGAGAAGTCAGTTATACTGAAGATGC-CTTCCAGG-CCCCCCTTGGTC-CCTTCTGAC-------------GTCACCGCAGATGATCA--GGCCAGGGGTGGGAGTCTGAACAGCAGATAATTGGCCAAACAAGTCTATGAGGTCACCTATCAAGGAAG
s panTro5.chr6             30364265 181 + 175400573 AGTAGGAGGAGACTGACAGCCCCCAGGG----TCTCTCCTCAGGAGAGAAGTCAGTTATACTGCAGATGC-CTTCCAGG-CCCCCCTTGGTC-CCTTCTGAC-------------GTCACCGCAGATGATCG--GGCCAGGGGTGGGAGTCTGAACAGCAGATAATTGGCCAAACAAGTCTATGAGGTCACCTGTCAAGGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30598595 181 + 173848474 AGTAGGAGGAGACTGACAGCCCCCAGGG----TCTCTCCTCAGGAGAGAAGTCAGTTATACTGAAGATGC-CTTCCAGG-CCCCCCTTGGTC-CCTTCTGAC-------------GTCACCGCAGATGATCG--GGCCAGGGGTGGGAGTCTGAACAGCAGATAATTGGCCAAACAAGTCTATGAGGTCACCTGTCAAGGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     305681 180 +   2037526 AGTAGGAGGAGACTGACAGCCCCCAGGG----TCTCTCCTCAGGAGAGAAGTCAGTTATACTGAAGATGC-CTTCCAGG-CCCCCCTTGGTC-CCTTCTGAC-------------GTCACCGCAGATGATCG--GGCC-GGGGTGGGAGTCTGAACAGCAGATAATTGGCCAAACAAGTCTATGAGGTCACCTGTCAAGGAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74972146 181 + 122973662 AGTGGGAGGAGACTGACAGCCCCCAGGG----TCTCTCTTCAGGAGAGAGGTCAGTTATACTGAAGATGC-CTTCCAGG-CCCCCCTTGGTC-CCTTCTGAC-------------ATGACTGCAGATGATCG--GGCCAGGGGTGGGAGTCTGAACAGCAGATTATTGGCCAAACAAGTCTATGAGGTCAGCTGTCAAGGAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30850362 180 + 172585720 AGTGGGAGGAGACTGACAGTCCCCAGGG----TCTCTCCACAGGAGAGAAGTCAGTTATACTGAAGATGC-CTTCCAGG-CCCCCCTTGGTC-CCTTCTGAC-------------GTGACCGCAGATGATCG--GACT-GGGGTGGGAGTCTGAACAGCAGATAATTGGCCAAACAAGTCTGTGAGGTCACCTGTCAAGGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30139848 180 - 170955103 AGTGGGAGGAGACTGACAGTCCCCAGGG----TCTCTCCACAGGAGAGAAGTCAGTTATACTGAAGATGC-CTTCCAGG-CCCCCCTTGGTC-CCTTCTGAC-------------GTGACCGCAGATGATCG--GACT-GGGGTGGGAGTCTGAACAGCAGATAATTGGCCAAACAAGTCTGTGAGGTCACCTGTCAAGGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     389065 180 +   1495729 AGTGGGAGGAGACTGACAGTCCCCAGGG----TCTCTCCACAGGAGAGAAGTCAGTTATACTGAAGATGC-CTTCCAGG-CCCCCCTTGGTC-CCTTCTGAC-------------GTGACCGCAGATGATCG--GGCT-GGGGTGGGAGTCTGAACAGCAGATAATTGGCCAAACAAGTCTGTGAGGTCACCTGTAAAGGAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     490769 180 -    863181 AGTGGGAGGAGACTGACAGTCCCCAGGG----TCTCTCCACAGGAGAGAAGTCAGTTATACTGAAGATGC-CTTCCAGG-CCCCCCTTGGTC-CCTTCTGAC-------------GTGACCGCAGATGATCG--GACT-GGGGTGGGAGTCTGAACAGCAGATAATTGGCCAAACAAGTCTGTGAGGTCACCTGTCAAGGAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29639377 180 -  71996105 AGTGGGAGGAGACTGACAGTCCCCAGGG----TCTCTCCACAGGAGAGAAGTCAGTTATACTGAAGATGC-CTTCCAGG-CCCCCCTTGGTC-CCTTCTGAT-------------GTGACCGCAGATGATCG--GGCT-GGGGTAGGAGTCTGAACAGCAGATAATTGGCCAAACAAGTCTGTGAGGTCACCTGTCAAGGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     372203 180 -    735854 AGTGGGAGGAGACTGACAGTCCCCAGGG----TCTCTCCACAGGAGAGAAGTCAGTTATACTGAAGATGC-CTTCCAGG-CCCCCCTTGGTC-CCTTCTGAC-------------GTGACCGCAGATGATCG--GACT-GGGGTGGGAGTCTGAACAGCAGATAATTGGCCAAACAAGTCTGTGAGGTCACCTGTCAAGGAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     277751 179 -   1829203 AGTGGGAGGAGACTGACAGTCCCCAGGG----TCTCTCCACAGGAGAGAAGTCAGTTATACTGAAGATGC-CTTCCAGG--CCCCCTTGGTC-CCTTCTGAC-------------GTGACTGCAGATGATCG--GGCC-GGGGTGGGAGTCTGAACACCAGATAATTGGCCAAACAAGTCTATGAGGTCACCTGTCAAAGAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30477415 181 + 171630274 AGTCGGAGGAGAATGTCAGCCCACAGGG----TCCCTCCACAAGAGAGAAGTTTGTTATACTGAAGACGC-CTGCCAGG-CCCCCTATGGCT-CCTTCTGAC-------------ATGACCACAGATGATCG--GGCCAGGGGTGAGTGTCTCAACAGCAGATGATTGGCCATTCGAGTCTATGAGGTCAGCTGTCAAGAAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           283416 182 +    515838 AGTGGGAGGAGAATGGCAGCCCACAGGG----TCCCTCCACAGGAGAGAAGTTCATTATACTGAAGACGC-CTGCCAGGCCCCCCCATGGCT-CCGTCTGAC-------------ATGACCACAGATGATCC--GGCCAGGGGTGGGTGTCTCAACAGCAGATGGTTGGCCAGTCAAGTCTCTGAGGTCACCTGTCAAGAAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     912601 181 -   1771730 AGTGGGAGGAGAATGGCAGTCCACAGGG----TCCCTCCAGAGGAGAGAAGTTCGTTATACTGAAGACGC-CTGCCAGG-CCCCCTATGGCT-CCTTCTGAC-------------ATGACCACAGATGATCG--GGCCAAGGGTGGGTGTCTCAACAGCAGATGGTTGGCCAGCTGAGTTTGTGAGGTCACCTGTCAAGAAAG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           326353 194 +  18854210 ACTGGAAGGAAACTGACAGCCCCAAGGG----TCTCTCAACTGAAGAAAAGTCCCAT-TACTGCATAGGCACTGCCAGG-CTTCCCTCAGCCATCTTCTGACCAATAGGCCAGGGATGAC-ACAGAAGATCA--GGCTGGGGCTGAACATCTGATCAGCAGATGGTTGGCCAATCAAGTCTATGAGGTGGCCAGTTGAGAAAA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            42040 167 +     53444 AGCAGAAAGAGCCTGA-GGAGCTCAGAGTGCCTCTCTCCACCTGAGAGAAGTTGCTT------------C-CTGTCAGG-CCCACA--GCTC-TCTTCTGAGTCA----------GTCACCAGAGCAGGGCGTCGACC-AGGGCAG----CCTAACCACAG---GCCGGGTGGACGAGACTACGGGGTGGCCTGCCAAGAAAG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542   2 -  94987271 I
e proCoq1.NW_012149775v1     187204 189 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I
e aotNan1.NW_018496901v1      93124 1183 -    486031 I

a score=724051.000000
s hg38.chr6_GL000254v2_alt  1495014 62 +   4827813 ACCTTATCAAAGAGGGACAATAGTAATTAACTGAAACCATCAGGTCCTCTCGGAGATTCAGA
s panTro5.chr6             30364446 62 + 175400573 ACCTTATCAAAGAGGGACAATAGTAATTAACTGAAACCATCAGGTCCTCTCGGAGATTCAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30598776 62 + 173848474 ACCTTATCAAAGAGGGACAATAGTAATTAACTGAAACCATCAGGTCCTCTCGGAGATTCAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     305861 62 +   2037526 ACCTTATCAAAGAGGGACAATAGTAATTAACTGAAACCATCAGGTCCTCTCGGAGATTCAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74972327 62 + 122973662 ATCTTATCAAAGAGGGACAATAGTAATTAACTGAAACTATCAGGTCCTCTCGGAGATTCAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30850542 62 + 172585720 ACCTTATCAAAGAGGGACAATAGTAATTAACTGAAACCATCAGGTCCTCTTGGAGATTCAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30140028 62 - 170955103 ACCTTATCAAAGAGGGACAATAGTAATTAACTGAAACCATCAGGTCCTCTTGGAGATTCAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     389245 62 +   1495729 ACCTTATCAAAGAGGGACAATAGTAATTAACTGAAACCATTAGGTCCTCTTGGAGATTCAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     490949 62 -    863181 ACCTTATCAAAGAGGGACAATAGTAATTAACTGAAACCATCAGGTCCTCTTGGAGATTCAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29639557 62 -  71996105 ACCTTATCAAAGAGGGACAATAGTAATTAACTGAAACCATCAGGTCCTCTTGGAGATTTAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     372383 62 -    735854 ACCTTATCAAAGAGGGACAATAGTAATTAACTGAAACCATCAGGTCCTCTTGGAGATTCAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     277930 62 -   1829203 ACCTTATCAAAGAGGGACAATAGTAATTAACTGAAACCATCAGGTCCTCTTGGAGATTCAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30477596 62 + 171630274 GCCTTATCAGTGAGGGACAATAGTAATTAACTGAAAGCATCAGGTCCTCTTGGAGATTCAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           283598 62 +    515838 GCCTTATCAAAGAGGGACAATAGTAATTAACTGAAACCATCAGGTCCTCTCAGAGATTCAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     912782 62 -   1771730 GCCTTATCAAAGAGGGACAATAGTAATTAACTGAAACCATCAGGTCCTCTTGGAGATTCAGA
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     187393 62 -   1411461 ACCTTATCAAAGAGGGACAACGATAATTAGCTGAAACCGCCAGGTTCCCTCGGAGACTCAGA
i proCoq1.NW_012149775v1   I 189 I 783
s otoGar3.GL873550           326547 51 +  18854210 TTCTTATCAAAGAGAGACAATGATAATTAACTGAAA-----------CCCTGGAAACTCAGA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            42207 41 +     53444 AGCCCATCAAAGAGGGAGAATGATAA---------------------TCCTGGAAATTCAAA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542  2 -  94987271 I
e canFam3.chr35            26348219 196 +  26524999 I
e aotNan1.NW_018496901v1      93124 1183 -    486031 I

a score=1811449.000000
s hg38.chr6_GL000254v2_alt  1495076 197 +   4827813 AGGGATCCATGATGAATGTGT----CATTAGTTGGCAAGAAGAGCAGACACAGAGAGAATCAGAGATGCATGTGCAGCCACGATGTATTGGAACAGGTGTCCATGACCCATGCTGCTGAGAGGCCGCAGGAATATCCAGTCTTCAC-GCTTCTTTGGACTTCGAGCCCACTTCTTACCGGTAGGTCCTGGGCATACAACATA
s panTro5.chr6             30364508 197 + 175400573 AGGGATCCATGATGAATGTGT----CATTAGTTGGCAAGAAGAGCAGACACAGAGAGAATCAGAGATGCATGTGCAGCCACGATGTATTGGAACAGGTGTCCACGACCCATGCTGCTGAGAGGCCGCAGGAATATCCAGTCTTCAC-GCTTCTTTGGACTTCGAGCCCACTTCTTACCGGTAGGTCCTGGGCATACAACATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30598838 197 + 173848474 AGGGATCCATGATGAATGTGT----CATTAGTTGGCAAGAAGAGCAGACACAGAGAGAATCAGAGATGCATGTGCAGCCACGATGTATTGGAACAGGTGTCCACGACCCATGCTGCTGAGAGGCCGCAGGAATATCCAGTCTTCAC-GCTTCTTTGGACTTCGAGCCCACTTCTTACCGGTAGGTCCTGGGCATACAACATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     305923 197 +   2037526 AGGGATCCATGATGAATGTGT----CATTAGTTGGCAACAAGAGCAGACACGGAGAGAATCAGAGATGCATGTGCAGCCACGATGTATTGGAACAGGTGTCCACGACCCATGCTGCTGAGAGGCCGCAGGAATATCCAGTCTTCGT-ACTTCTTTGGACTTCGAGCCCACTTCTTACCGGTAGATCCTGGGCATACAACATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74972389 197 + 122973662 AGGGATCCATGATGAATGTGT----CATTAGTTGGCAAGAAGAGCAGACACAGACAGAATCAGAGATGCACGTGCAGCCTTGATGTATTGGAACAGGTGTCTACGACCCATGCTGCTGAGAGGCCGCAGGAAGATCCAGTCTTCAC-GCTTCTTTGGACTTTGAGCCCACTTCTTACCAGTAGGTCCTGGGCATACAACATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30850604 196 + 172585720 AGGGATCCTTGATGAATGTGT----CATTAGTTGGCAAGAAGAGCAGACACAGAGAGAATCAGAGCTGCATGTGCAGCCACGATGTATTGGAACAGGTGTCCACAACCCATGCTACTGAGA-GCCGCAGGAATATCCAGTCTTCAC-GTTTCTTTGGACTTCGAGCCCACTTCTTACCGGTAGGTCCTGGGCATacaacata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30140090 196 - 170955103 AGGGATCCTTGATGAATGTGT----CATTAGTTGGCAAGAAGAGCAGACACAGAGAGAATCAGAGCTGCATGTGCAGCCACGATGTATTGGAACAGGTGTCCACAACCCATGCTACTGAGA-GCCGCAGGAAGATCCAGTCTTCAC-GTTTCTTTGGACTTCGAGCCCACTTCTTACCGGTAGGTCCTGGGCATacaacata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     389307 196 +   1495729 AGGGATCCTTGATGAATGTGT----CATTAGTTGGCAAGAAGAGCAGACACAGAGAGAATCAGAGCTGCATGTGCAGCCACGATGTATTGGAACAGGTGTCCACAACCCATGCTACTGAGA-GCCGCAGGAAGATCCAGTCTTCAC-GTTTCTTTGGACTTCGAGCCCACTTCTTACCGGTAGGTCCTGGGCATacaacata
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     491011 196 -    863181 AGGGATCCTTGATGAATGTGT----CATTGGTTGGCAAGAAGAGCAGATACAGAGAGAATCAGAGCTGCATGTGCAGCCACGATGTATTGGAACAGGTGTCCACAACCCATGCTACTGAGA-GCCGCAGGAAGATCCAGTCTTCAC-GTTTCTTTGGACTTCGAGCCCACTTCTTACTGGTAGGTCCTGGGCAtacaacata
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29639619 196 -  71996105 AGGGATCCTTGATGAATGTGT----CATTAGTTGGCAAGAAGAGCAGACACAGAGAGAATCAGAGCTGCATGTGCAGCCACGATGTATTGGAACAGGTGTCCACAACCCATGCTACTGAGA-GCCGCAGGAAGATCCAGTCTTCAC-GTTTCTTTGGACTTCGAGCCCACTTCTTACCAGTAGATCCTGGGCATACAACCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     372445 196 -    735854 AGGGATCCTTGATGAATGTGT----CATTGGTTGGCAAGAAGAGCAGATACAGAGAGAATCAGAGCTGCATGTGCAGCCACGATGTATTGGAACAGGTGTCCACAACCCATGCTACTGAGA-GCCGCAGGAAGATCCAGTCTTCAC-GTTTCTTTGGACTTCGAGCCCACTTCTTACTGGTAGGTCCTGGGCAtacaacata
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     277992 196 -   1829203 AGGGATCCTTGATGAATGTGT----CATTAGTTGGCAAGAAGAGCAGACACAGAGAGAATCAGAACTGCATGTGCAGCCACGATGTATTGGAACAGGTGTCCACAACCCATGCTACTGAGA-GCTGCAGGAAGATCCAGTCTTCAC-GTTTCTTTGGACTTCGAGCCCACTTCTTACCGGTAGGTCCTGGGCATacaacata
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30477658 183 + 171630274 AGGGATCCATGAT-AATGTGT----CATCAGTTGACAAGAAGAGCAGACACAG--AGAATCAGAGCTGCATGCGTAGCCACCATGTATTGGAGCAGGTGTCCACCACCCATGCTGCTGAGAGGCCGCAGGAAGATCCAGTCTTCAC-ACTGCCTTGGACCTCGAGCCCCCTTCTTACCAGTAGA-----------CAACATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           283660 199 +    515838 AGGGATCCATGGTGAATGTGTCATCCATCAGTTGGCAAGAAGAGCAGACATGG--AGAATCAGAGCTGCATGCACAGCCGCCCTGGATTGGAGCAGGTGTCCACCACCCATGCTGCTGAGAGGCCGCGGGAAGACCCAGTCTTCAC-ACTGCCTTGGACCTCGGGCCCCCTTCTTACCAGTAGGTCTTGGGCACCCAACATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     912844 195 -   1771730 AGAGATCCATGGTGAAGGTGT----CATCAGTTGGCAAGGAGAGCAGGCACAG--AGAATCAGAGCTGCATGCACAGTCACCATGTATTGGAGCAGGTGTCCACCACCCATGCTGCTGAGAGGCCACAGGAAGACCCAGTCTTCAC-ACTGCCTTGGACCTCGAGGCCCCTTCTTACCAGTAGGTCTTGGGCACACAACATG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           326598 190 +  18854210 AGGGAATTGTGAGGAAACTGC----CATTAGCTGGCCAGAAGAGCAGGTGCAGAGGGAATCAGAGCTGCACACAAGGC----ATGTACTGGAGCAGGTGTTCATGACCCATGCTGCTGAAAGACCACAGGATAATCTAGCCTCCAC-GGTTCCTTGGACCTCAAACCCCCTTCCTACCCAT---TCTTGAACACACAACAta
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            42248 152 +     53444 ATGCAGCTATGAGCACTGTGC----CCTAAGTCAGTGGGGAGGG-AGGCA----GGGGGTCGGAGCTGCTCGTG-----GCAGTG-ACCTGAGCAGA-GCCCAC--CCCCAGTTACTGAGTGACCACATGGTAGTTCAGCCTCTGCAGTCTCCTTGggcctccag---------------------------agaca-----
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542   2 -  94987271 I
e proCoq1.NW_012149775v1     187455 783 -   1411461 I
e canFam3.chr35            26348219 196 +  26524999 I
e aotNan1.NW_018496901v1      93124 1183 -    486031 I

a score=1453627.000000
s hg38.chr6_GL000254v2_alt  1495273 157 +   4827813 CCACTgcataatggtcatgagcacagactcgggagccaaaccacaagacttcaaatgctggctctgcgac---ttac-tatcagctgatttgagaccagctgctcggcctccacatgtctcagttctcttatgtacaagatgg--------------gcacctacctcctgaggt
s panTro5.chr6             30364705 157 + 175400573 CCACTgcataatggtcatgagcacagactcgggagccaaaccacaagacttcaaatgctgtctctgcgac---ttac-tatcagctgatttgagaccagctgctcggcctccacatgtctcagttctcttatgtacaagatgg--------------gcacctacctcctgaggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30599035 157 + 173848474 CCACTgcataatggtcatgagcacagactcgggagccaaaccacaagacttcaaatgctgtctctgcgac---ttac-tatcagctgatttgagaccagctgctcggcctccacatgtctcagttctcttatgtacaagatgg--------------gcacctacctcctgaggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     306120 157 +   2037526 CCACTgcataatggtcatgagcacagacttgggagccaaaccacaagacttcaaatgctggctctgcgac---ttac-tatcagctgatttgagaccagctgctcggcctccacatgtctcagttctcttatgtacaagatgg--------------gcacctacctcctgaggt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74972586 171 + 122973662 CCACTgcataatggtcatgagcacagactcgggagccaaaccacaagacttcaaatgctggctctgctac---ttac-tatcagctgatttgagaccagctgcttggcctccacatgtctcagttctcttatgtacaagatgggcatattaataacagcacctacctcccggggt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30850800 164 + 172585720 cc-------aacggtcatgagcagagactcaggagccgaaccacaagaattcaaatgctggctctgctac---tcac-tatcggctgatttgagaccagctgctcagcctccacatgtctcagttctgttatgtacaagatgggtatattaataacagcacctacctcctagggt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30140286 164 - 170955103 cc-------aacggtcatgagcagagactcaggagccgaaccacaagaattcaaatgctggctctgctac---tcac-tatcggctgatttgagaccagctgctcagcctccacatgtctcagttctgttatgtacaagatgggcatattaataacagcacctacctcctagggt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     389503 164 +   1495729 cc-------aacggtcataagcagagactcaggagccgaaccacaagaattcaaatgctggctctgctac---tcac-tatcggctgatttgagaccagctgctcagcctccacatgtctcagttctgttatgtacaagatgggtatattaataacagcacctacctcctagggt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     491207 164 -    863181 cc-------cacggtcatgagcagagactcaggagccgaaccacaagaattcaaatgctggctctgctac---tcac-tattggctgatttgagaccagctgctcagcctccacatgtctcagttctgttatgtacaagacgggcgtattaataacagcacctacctcctagggt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29639815 164 -  71996105 CC-------AACggtcatgagcagagactcaggagccgaaccacaagaattcaaatgctggctctgctac---tcac-tatcggctgatttgagaccagctgctcggcctccacatgtctcagttctgttatgtacaagatgggcatatgaataacagcacctacctcccagggt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     372641 164 -    735854 cc-------cacggtcatgagcagagactcaggagccgaaccacaagaattcaaatgctggctctgctac---tcac-tattggctgatttgagaccagctgctcagcctccacatgtctcagttctgttatgtacaagatgggcgtattaataacagcacctacctcctagggt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     278188 164 -   1829203 cc-------aatggtcatgcgcagagactcaggagccgaaccacaagaattcaaatgctggctctgctac---tcac-tatcggctgatttgagaccagctgctcagcctccacatgtctcagttctgttatgtacaagatgggcatattaataacagcacctacctcccagggt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30477841 169 + 171630274 CCACTgcataatggtcatgagcacagactcaggagccgaagcaccagaattcaaatgctggctctgctac---ttac-tatcagctgatttgagaccagcggctcgaccttcac--atctcagttctcttaagtacaaaatggggatattaataacagcgcctgcctcccaggct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           283859 168 +    515838 CCACTgcatgatggtcatgagcatagactcaggagccaaagcaccagaattcaaatgctggctcagctac---ttac-tatcagctgatttgagaccagctgctcgaccttcac--gtctcagttctcttaagtac-aaatggggatattaataacagcacctacctcccagggt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     913039 169 -   1771730 CCACTgcataatggtcacgagcacagactcaggagccaaagcaccagaattcaaatgctggctctgctac---ttac-tatcagctgatttgagaccagctgcttgaccttcac--gtctcagttctcttaagtacgaaatggggatattgataacagcacctacctcccagggt
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           326788 160 +  18854210 ca---gcataatggtcatgaccacagactagagagcagaacc---------catatgtctgctctgctacttattac-catcggttgttttggaaccagttacttgacctccat--atctcagttcctttatgtacaaaagggggatattaataatagcacccacctgatagggt
i otoGar3.GL873550         C 0 I 1454
s canFam3.chr35            26348415 161 +  26524999 -----CCACTgtggtcgcgagcacagcct--ggagccagaccatcgga-tccaagtgtgtgatatgtctc---atgtgtgtctacagatttggggccagctg-tcagcctccacctg-ctggattgtctcatgcatgcagtagggccactcatgatggcaccaacctcataggt-
i canFam3.chr35            I 196 C 0
s dasNov3.JH567297            42400 129 +     53444 -----gcact----------gcatagact--ggggccaagccactgaa-------------------------tt---catctgttcatatggggccaggtactcaatctccacatggc-caggtctttcacatataaaacagggatctacacaagagcacctaccacattgagc
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542   2 -  94987271 I
e proCoq1.NW_012149775v1     187455 783 -   1411461 I
e aotNan1.NW_018496901v1      93124 1183 -    486031 I

a score=491187.000000
s hg38.chr6_GL000254v2_alt  1495430 53 +   4827813 tgttgtgaggattaaatgagttaatata-tacaaatatttattatggtgtttgg
s panTro5.chr6             30364862 53 + 175400573 tgttgtgaggattacatgagttaatata-tacaaatatttattatggtgtttgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30599192 53 + 173848474 tgttgtgaggattacatgagttaatata-tacaaatatttattatggtgtttgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     306277 53 +   2037526 tgttgtgaggattaaatgagttaatata-tacaaatatttattatggtgtttgg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74972757 53 + 122973662 tgttgtgaggattaaatgagttaatata-tacaaatatttattatggtgtttgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30850964 53 + 172585720 tgttgtgaggattaaatgagttgataca-tacaaatatttattatggtgtttgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30140450 53 - 170955103 tgttgtgaggattaaatgagttgatata-tacaaatatttattatggtgtttgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     389667 53 +   1495729 tgttgtgaggattaaatgagttgatata-tacaaatatttattatggtgtttgg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     491371 53 -    863181 tgttgtgaggattaaatgagttgatata-tacaaatatttattgtggtgtttgg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29639979 53 -  71996105 tgtcgtgaggattaaatgagttgatata-tacaaatatttattatggtgtttgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     372805 53 -    735854 tgttgtgaggattaaatgagttgatata-tacaaatatttattgtggtgtttgg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     278352 53 -   1829203 tgttgtgaggattaaatgagttgatata-tacaaatatttattatggtgtttgg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30478010 53 + 171630274 ggttgtgagaattaaacgagataatata-aacgaatatttattctggggtttgg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           284027 54 +    515838 agttgtaaggattaaacgagataatatattacaaatatttattatggggtttgg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     913208 54 -   1771730 ggttgtgaggattaaacgagataatatattacaaatatttattatggggtttgg
i cebCap1.NW_016107755v1   C 0 C 0
s canFam3.chr35            26348576 37 +  26524999 ---------------ttgaattaatgtg-t-caaatatttaatacaGTGACCAC
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            42529 51 +     53444 tgttgtaaggattaaatgggttaataca-ta-aagcatatattat-gcatctgg
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542  2 -  94987271 I
e proCoq1.NW_012149775v1     187455 783 -   1411461 I
e otoGar3.GL873550           326948 1454 +  18854210 I
e aotNan1.NW_018496901v1      93124 1183 -    486031 I

a score=254100.000000
s hg38.chr6_GL000254v2_alt  1495483 27 +   4827813 ccaaaataagttctatgtgtgtgattg
s panTro5.chr6             30364915 27 + 175400573 ccaaaataagttctATGTGTGCGATTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30599245 27 + 173848474 ccaaaataagttctATGTGTGCGATTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     306330 27 +   2037526 ccaaaataagttctatgtgtgtgattg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74972810 27 + 122973662 ccaaaataagttctatgtgtgtgattg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30851017 27 + 172585720 ccaaaatgagttttatgtgtgttattg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30140503 27 - 170955103 ccaaaatgagttctctgtgtgttattg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     389720 27 +   1495729 ccaaaatgagttttatgtgtgttattg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     491424 27 -    863181 ccaaaatgagttctatgtgtgttattg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29640032 27 -  71996105 ccaaaatgagttctatgtgtgttattg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     372858 27 -    735854 ccaaaatgagttctatgtgtgttattg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     278405 27 -   1829203 ccaaaatgagttctatgtgtgttattg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30478063 27 + 171630274 ccacaatgagctctatgtatgttattg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           284081 27 +    515838 ccaaaatgagttctatgtacgctattg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     913262 27 -   1771730 ccaaaatgagttctatgtatgttattg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      94307 27 -    486031 CCAAAATGAGTTCTATGTATGTTATTG
i aotNan1.NW_018496901v1   I 1183 C 0
s canFam3.chr35            26348613 22 +  26524999 CTACCCTGAGTTCTCTGTGTGT-----
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            42580  7 +     53444 -cttaata-------------------
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542  2 -  94987271 I
e proCoq1.NW_012149775v1     187455 783 -   1411461 I
e otoGar3.GL873550           326948 1454 +  18854210 I

a score=420703.000000
s hg38.chr6_GL000254v2_alt  1495510 36 +   4827813 ttatCAGCATTTTTGGAATCTCTAGTTCTT--------CCTACA
s panTro5.chr6             30364942 36 + 175400573 TTATCAGCATTTTTGGAATCTCTAGTTCTT--------CCTACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30599272 36 + 173848474 TTATCAGCATTTTTGGAATCTCTAGTTCTT--------CCTACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     306357 36 +   2037526 ttatCAGCATTTTTGGAATCTCTAGTTCTT--------CCTACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74972837 36 + 122973662 ttatCAACATTTTTGGAATCTCTAGTTCTT--------CCTACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30851044 36 + 172585720 ttATCAACATTTTTGGAATCTCTAGTTCTT--------CCTACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30140530 36 - 170955103 ttATCAACATTTTTGGAATCTCTAGTTCTT--------CCTACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     389747 36 +   1495729 ttATCAACATTTTTGGAATCTCTAGTTCTT--------CCTACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     491451 36 -    863181 ttATCAACATTTTTGGAATCTCTAGTTCTT--------CCTACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29640059 36 -  71996105 ttATCAACATTTTTGGAATCTCTAGTTCTT--------CCTACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     372885 36 -    735854 ttATCAACATTTTTGGAATCTCTAGTTCTT--------CCTACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     278432 36 -   1829203 ttATCAACATTTTTGGAATCTCTAGTTCTT--------CCTACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30478090 44 + 171630274 ttatCAACATTTTTTGAATCTCTAGTTCTTTTTTTGAATCTCTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           284108 36 +    515838 ttATCAACATTTTTTGACTCTCTAGTTCTT--------CCCACA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     913289 36 -   1771730 ttatCAACATTTTTTGACTCTCTAGTTCTT--------CCTACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      94334 36 -    486031 TTATCAACATTTTTTGAATCTCTAGTTCTT--------CCTACA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           328402 36 +  18854210 TCACCAGCATTTTTTGCATCTCTAGCTCTT--------CTTACA
i otoGar3.GL873550         I 1454 C 0
s canFam3.chr35            26348635 18 +  26524999 ------------------TTGCTTGCTCGT--------TCGCTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            42587 36 +     53444 gtatcagcattccgtgaatCTCCAGTCCTT--------CCAATG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58105542  2 -  94987271 I
e proCoq1.NW_012149775v1     187455 783 -   1411461 I

a score=3631058.000000
s hg38.chr6_GL000254v2_alt  1495546 324 +   4827813 GGAACGAGTGGTGACCC-CACCAACTCA-CTCACGCCTG-ACATAGCTTCTCACGGGGCCTGGCT-CATGGTGGAAAATCGCATTTTC-CTTATTT------CTGCTTttataataaacttacctatcatttgaactaacttgagtgggtctcaa-----ttctttgcaatagaaagggTTGCTACCATGTAAGCTGTG--AA-AAATGAGGTGTAAAC-TGTGGATGTTA---CAAATGTGCAACAGTCCTTCAGAGTC--GGAAAGGGTAGCTGGG-------A-----------CTCTGGGG--C-------------------------------------------------------------------------------------------------CTCT----AGACTTGAGCACTTCCT-GG---GGAGGGAACCCAGAGTCCCA--CTTCCGGCCAGCAGAGCA
s panTro5.chr6             30364978 324 + 175400573 GGAACGAGTGGTGACCC-CACCAACTCA-CTCACCCCTG-ACATAGCTTCTCACGGGGCCTGGCT-CATGGTGGAAAATCGCATTTTC-CTTATTT------CTGCTTttataataaacttacctatcatttgaactaacttgagtgggtctcaa-----ttctttgcaatagaaagggTTGCTACCATGTAAGCTGTG--AA-AAATGAGGTGTAAAC-TGTGGATGTTA---CAAATGTGCAACAGTCCTTCAGAGTC--GGAAAGGGTAGCTGGG-------A-----------CTCTGGGG--C-------------------------------------------------------------------------------------------------CTCT----AGACTTGAGCACTTCCT-GG---GGAGGGAACCCAGAGTCCCA--CTTCTGGCCAGCAGAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30599308 324 + 173848474 GGAACGAGTGGTGACCC-CACCAACTCA-CTCACCCCTG-ACATAGCTTCTCACGGGGCCTGGCT-CATGGTGGAAAATCGCATTTTC-CTTATTT------CTGCTTttataataaacttacctatcatttgaactaacttgagtgggtctcaa-----ttctttgcaatagaaagggTTGCTACCATGTAAGCTGTG--AA-AAATGAGGTGTAAAC-TGTGGATGTTA---CAAATGTGCAACAGTCCTTCAGAGTC--GGAAAGGGTAGCTGGG-------A-----------CTCTGGGG--C-------------------------------------------------------------------------------------------------CTCT----AGACTTGAGCACTTCCT-GG---GGAGGGAACCCAGAGTCCCA--CTTCTGGCCAGCAGAGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     306393 324 +   2037526 GGAACGAGTGGTGACCC-CACCAACTCA-CTCACGCCTG-ACATAGCTTCTCACGGGGCCTGGCT-CATGGTGGAAAATCGCATTTTC-CTTATTT------CTGCTTttataataaacttacctatcatttgaactaacttgagtgggtctcaa-----ttctttgcaatagaaagggTTGCTACCATGTAAGCTGTG--AA-AAATGAGGTGTAAAC-TGTGGATGTTA---CAAATGTGCAACAGTCCTTCAGAGTC--GGAAAGGGTAGCTGGG-------A-----------CTCTGGGG--C-------------------------------------------------------------------------------------------------CTCT----AGACTTGAGCACTTCCT-GG---GGAGGGAACCCAGAGTCCCA--CTTCCGGCCAGCAGAGCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74972873 323 + 122973662 GGAACGAGTGGTGACCC-CACCAACTCA-CTCACCCC-G-ACATAGCTTCTCACGGGGCCTGGCT-CATGGTGGAAAATCCCATTTTC-CTTATTT------CTGCTTttataataaacttacctatcatttgaactaacttgagtgggtctcac-----ttctttgcaatagaaagggTTACTACCATGTAAGCTGTG--AA-AAATGAGGTGTAAAC-TGTGGATGTTA---CAAATGTGCAACAGTCCTTCAGAGTC--AGAAAGGGCAGCTGGG-------A-----------CTCTGGGG--C-------------------------------------------------------------------------------------------------CTCT----AGACTTGAGCACTTCCT-GG---GGAGGGAACCCAGAGTCCCA--CTTCCGGCCAGCACAGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30851080 324 + 172585720 CGAACAAGTGGTGACCC-CACCAACTCA-CTCACCCCTG-ACATAGCTTCTCACGAGGACTGGCT-CATGGTGGAAAATCCCATTTTC-CTTATTT------CTGCccttataataaacttacctattatttgaactaacttgagtgggtctcac-----ttctttgcaatagaaagggTTGCTACCATGTAAGCTGTG--AA-AAATGAGATGTAAAC-TGTGGACGTTA---CAAGTGTGCAACACTCCTTCAGAATC--GGAAAGAGCAGCTGGG-------A-----------CTCTGGGG--C-------------------------------------------------------------------------------------------------CTCT----AGACTTGAGCACTTCCT-GG---GGAGTGAACCCAGAGTCCCA--CTTCCGGCCAGCAGAGCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30140566 324 - 170955103 CGAACAAGTGGTGACCC-CACCAACTCA-CTCACCCCTG-ACATAGCTTCTCACGAGGACTGGCT-CATGGTGGAAAATCCCATTTTC-CTTATTT------CTGCccttataataaacttacctattatttgaactaacttgagtgggtctcac-----ttctttgcaatagaaagggTTGCTACCATGTAAGCTGTG--AA-AAATGAGATGTAAAC-TGTGGACGTTA---CAAGTGTGCAACAGTCCTTCAGAATC--GGAAAGAGCAGCTGGG-------A-----------CTCTGGGG--C-------------------------------------------------------------------------------------------------CTCT----AGACTTGAGCACTTCCT-GG---GGAGTGAACCCAGAGTCCCA--CTTCCGGCCAGCAGAGCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     389783 324 +   1495729 CGAACAAGTGGTGACCC-CACCAACTCA-CTCACCCCTG-ACATAGCTTCTCACGAGGACTGGCT-CATGGTGGAAAATCCCATTTTC-CTTATTT------CTGCccttataataaacttacctattatttgaactaacttgagtgggtctcac-----ttctttgcaatagaaagggTTGCTACCATGTAAGCTGTG--AA-AAATGAGATGTAAAC-TGTGGACATTA---CAAGTGTGCAACAGTCCTTCAGAATC--GGAAAGAGCAGCTGGG-------A-----------CTCTGGGG--C-------------------------------------------------------------------------------------------------CTCT----AGACTTGAGCACTTCCT-GG---GGAGTGAACCCAGAGTCCCA--CTTCCGGCCAGCAGAGCG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     491487 324 -    863181 CGAACAAGTGGTGACCC-CACCAACTCA-CTCACCCCTG-ACATAGCTTCTCACGAGGACTGGCT-CATGGTGGAAAATCCCATTTTC-CTTATTT------CTGCccttataataaacttacctattatttgaactaacttgagtgggtctcac-----ttctttgcaatagaaagggTTGCTACCATGTAAGCTGTG--AA-AAATGAGATGTAAAC-TGTGGACGTTA---CAAGTGTGCAACAGTCCTTCAAAATC--GGAAAGGGCAGCTGGG-------A-----------CTCTGGGG--C-------------------------------------------------------------------------------------------------CTCT----AGACTTGAGCACTTCCT-GG---GGAGTGAACCCAGAGTCCCA--CTTCCGGCCAGCAGAGCG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29640095 324 -  71996105 CGAACAAGTGGTGACCC-CACCAACTCA-CTCACCCCTG-ACATAGCTTCTCACGAGGACTGGCT-CATGGTGGTAAATCCCATTTTC-CTTATTT------CTGCccttataataaacttacctattatttgaactaacttgagtgggtctcac-----ttctttgcaatagaaagggTTGCTACCATGTAAGCTGTG--AA-AAATGAGATGTAAAC-TGTGGACGTTA---CAAGTGTGCAACAGTCCTTCAGAATC--GGAAAGGGCAGCTGGG-------A-----------CTCTGGGG--C-------------------------------------------------------------------------------------------------CTCT----AGACTTGAGCACTTCCT-GG---GGAGTGAACCCAGAGTCCCA--CTTCCGGCCAGCAGAGCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     372921 324 -    735854 CGAACAAGTGGTGACCC-CACCAACTCA-CTCACCCCTG-ACATAGCTTCTCACGAGGACTGGCT-CATGGTGGAAAATCCCATTTTC-CTTATTT------CTGCccttataataaacttacctattatttgaactaacttgagtgggtctcac-----ttctttgcaatagaaagggTTGCTACCATGTAAGCTGTG--AA-AAACGAGATGTAAAC-TGTGGACGTTA---CAAGTGTGCAACAGTCCTTCAAAATC--GGAAAGGGCAGCTGGG-------A-----------CTCTGGGG--C-------------------------------------------------------------------------------------------------CTCT----AGACTTGAGCACTTCCT-GG---GGAGTGAACCCAGAGTCCCA--CTTCCGGCCAGCAGAGCG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     278468 324 -   1829203 CGAACAAGTGGTGACCC-CACCAACTCA-CTCACCCCTG-ACATAGTTTCTCACGAGGACTGGCT-CATGGTGGAAAATCCCATTTTC-CTTATTT------CTGCTcttataataaacttacctattatttgaactaacttgagtgggtctcac-----ttctttgcaatagaaagggTTGCTACCATGTAAGCTGTG--AA-AAATGAGATGTAAAC-TGTGGATGTTA---CAAGTGTGCAACAGTCTTTCAGAATC--GGAAAGGGCAGCTGGG-------A-----------CTCTGGGA--C-------------------------------------------------------------------------------------------------CTCT----AGACCTGAGCACTTCCT-GG---GGAGGGAACCCAGAGTCCCA--CTTCCGGCCAGCAGAGCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30478134 324 + 171630274 GGAAGGAATGGTGACCC-CACCAACTCA-CTCACCCC-G-ACACAGCTTCTCACGAGGGCTGGCT-TGTGGTGGAAAATCCCATTTTC-CTTATTTCTGTGCCtgttcttacaataaacttacctattatttgaattaacttgagtggg--tcac-----ttctttgcaatagaaagTGTTGCTACCATGGAAGCTGTG--AA-AAATGAAGTGTAAAC-TGTGGATGTTA---CAAGTGTGCAATAGTC---CAGAGTC--GGAAAGGGCAGCTGGG-------A-----------CTTGGGGG--C-------------------------------------------------------------------------------------------------CTCT----AGACTTGAGCACTTCCT-GG---GGAGGGAACACAGAGCTCCA--CTTCTGGCCAGCAGAGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           284144 331 +    515838 GGAAGGAGTGGTGACCC-CACCAACTCA-CTCACCCCTG-ACATAGCTTCTCATGAGGCCTGGCT-CATGATGGAAAATCCCATTTTC-CTTATTTCTGTGCCtgttcttataataaacttacctattattagaactaacttgagtggatctcac-----ttctttgcaatagaaagggTTGCTACCACGGAAGCTGTG--AA-AAATGAGGTGTAAAC-CGTGGATGTTA---CAAGTGTGCAACAGCCCTTCAGAGTC--AGAAAGGGCAGCTGGG-------A-----------CTCGGGGG--C-------------------------------------------------------------------------------------------------CTCT----AGACTTGAGCACTTCCTGGG---GGGGGGAACCCAGAGTTCCA--CGTCCGGCCAGCAGAGCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     913325 329 -   1771730 GGAAGGAGTGGTGACCC-CACCAACTCA-CTTACCCCTG-ACATAGCTTCTCATGAGGTCTGGCT-CATGGTGGAAAATCCCATTTTC-CTTATTTCTGTGCCTGTTCTTATAATAAACTTACCTATCATTAGAACTAACTTGTGTGGATCTCAC-----TTCTTTGCAATAGAAAGGGTTGCTACCATGGAAGCTGTG--AA-AAATGAGGGATAAAC-TGTGGATGTTG---CAAGTGTGCAATAGTCCTTCAGAGCC--GGAAAGGGCAGCTGGG-------A-----------CTC-AGGG--C-------------------------------------------------------------------------------------------------CTCT----AGACTTGAGCACTTCCT-GG---GGAGGGAACCCAGAGTTCCA--CTTCCAGCCAGCAGAGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      94370 328 -    486031 GGAAGGAGTGGTGACCC-CACCAACTCA-TTCACCCTTG-ACATAGCTTCTCATGAGGCCTGGCT-CATGGTGGAAAAT-CCATTTTC-CTTATTtctatgcctgttcttataataaacttacgtattatt-gaactaacttgagtggatctcac-----ttctttgcaatagaaagCGTTGCTACCATGGAAGCTGTG--AA-AAATGAGGTGTAAAC-TGTGGATGTTA---CAAGTGGGCAATAGCCCTTCAGAGTC--AGAAAGGGCAGCTGGG-------A-----------TTCATGGG--C-------------------------------------------------------------------------------------------------CTCT----AGACTTGAGCACTTCCT-GG---GGAGGGAACCCAGAGTTCCA--CTTCCGGCCAGCAGAGCA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           328438 442 +  18854210 GAAACTGGTGGTCACCCTTACTGCCCCACCCCACCCCTG-CCATAACTTCCCCAGAAGCCTGGCT-AATGATGGAGAATCCAATTTTC-CTCATTTCTCTGTGTGTTCATGTAATAAATTTTCCTGTTATTTGAACTAACTTGAATGGTTCTCTT-----ATTTTTGCAAAAGAAAGAGTTGCTACGATGTAAGCTGTG--AATAAATCAGGTGTAAACTTGTGGATGTTG-----AGCGTGCAATAGTCCTTTGGCATCTTGGAAGGGACAATAAGG-------GAGCACAGGAGCCTCtagag--caatcattctcaaccttcctgatgcggcgaccctttaatacagtccaaggggtcgcgacctacaggaaccacagcatttgaaaagttgagaaccactgctct----aGACTTTGGCACTGCCT-GG---GGAGGGAACTGGAAGCCCTG--CTCCTGGAGGGCAGAACA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58105544 328 -  94987271 ggaactgaaaatgcccc-cactaatcac-cctgTCCCTGCCCATAGTTTC-CATAAGGACTGGAA-AATTGTAAAAA---CAATTTTCTCTTACTTCTGTATCTGTTTTTATAATAAACTTCCCTATTATTTAAACCAACTGGGATGGGTCTCTCTTTTTTTTTTTGTGATAGAATTACCTTTTACAATGTAAGTAGAG--AA-AAATCAGGAGTCAACCTGTGGATGTCAGGTAAAGTGTGTAACACTTCTCTGGGGTCTGGTAAAGAGCAAATTGGGAGCCTAA-----------GCCTGGAG--C-------------------------------------------------------------------------------------------------CTTTAGACAGACTGTAACTCTTCCT-GG---GGAAGCAA-ATGGAGTC-----------------------
i mm10.chr17               I 2 C 0
s canFam3.chr35            26348653 220 +  26524999 ------------GGGCC-CAGCTTCACG-CCTTCACCTT-GCC--------------GTCTGGCT-GATG-CGGAAAATCCCATTTTC-TTTATTT-------------------------------------------------------ACAC-----ATCTGTCACAAAGAAAGAGCTGCTACAAGGAAGGGCATG-CAA-AGCTCAGGTGTGAAGGCACAGATATCA---GGA----------------CAGGATCCTGGGGAGGAAGACCAGG-------A---------------GGGGTAC-------------------------------------------------------------------------------------------------CTCT-----GCCGGGAGCACTTCAG-GGAGCAGAGGTACCCCAAGG-----------------GCAGAGC-
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            42623 275 +     53444 GGACCCAGCTGTGTCCC-CTC--------CCTGCTTTCC-CCATGGTCTCCCACCAGGCCTGGCTAAATGGTGGGAAATTTTATTTCC----ATGT------TTGTTCTGATAATAAACTTTCCCATTATTTGAACTAACTGGAGTGGGTCTCTG-----CTCTTTGAAATAGAAAGA-CTGTTACAGCATAAGCTGTGGGAA-AAGTCAGATGAAACA-TGTGGATGTCA------------------------GTGCT--GGCAAAGG-AGATGGG-------A---------------------C-------------------------------------------------------------------------------------------------CTCT----GGGGT-------------GG---CCATTAAACCTGGAGTCCAGGCTGTGTGGCCAGCAGAGC-
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e proCoq1.NW_012149775v1     187455 783 -   1411461 I

a score=2330054.000000
s hg38.chr6_GL000254v2_alt  1495870 186 +   4827813 AGGA-GGTTCATTAAGCTG-------CC-TTATCTTGAAGTTACCAGGTTTTAGGATCTATCCACTTCCCCTGTGCTGACTCCATACTCCGAAAGC-AAGTAAACTTCAAG-------TAAAATTACCCTAGGGGAGAAGCAGGTACTGACAGACCAACATGAGTGTTTTCACTTATGAGCAGTTTTATTTCTCAGTGTAAGA
s panTro5.chr6             30365302 186 + 175400573 AAGA-GGTTcattaagctg-------cc-ttatcttgaagttaccaggttttaggatctatccactccccctgtgctgactccatactccgaaagc-aagtaaacttcaag-------taaaattaccctaggggagaagcaggtactgacagaccaacatgagagttttcacttatgagcagttttatttctcagtgtaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30599632 186 + 173848474 AGGA-GGTTCATTAAGCTG-------CC-TTATCTTGAAGTTACCAGGTTTTAGGATCTATCCACTCCCCCTGTGCTGACTCCATACTCCGAAAGC-AAGTAAACTTCAAG-------TAAAATTACCCTAGGGGAGAAGCAGGTACTGACAGACCAACATGAGAGTTTTCACTTATGAGCAGTTTTATTTCTCAGTGTAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     306717 185 +   2037526 AGGA-GGTTCATTAAGCTG-------CC-TTATCTTGAAGTTACCAGG-TTTAGGATCTACCCACTTCCCCTGTGCTGACTCCATACTCCGAAAGC-AAGTAAACTTCAAG-------TAAAATTACCCTAGGGGAGAAGCAGGTACTGACAGACCAACATGAGTGTTTTCACTTATGAGCAGTTTTATTTCTCAGTGTAAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74973196 186 + 122973662 AAGA-GGTTCATTAAGCTG-------CC-TTATCTTGAAGTTACCAGGTTTTAGGATCTATCCACTTCCCCTGTGCTGACTCCATACTCCGAAAGC-AAGTAAACTTCAAG-------TAAAATTACCCTAGGGGAGAAGCAGGTACTGACAGACCAACATGAGTGTTTTCACTTATGAGCAGTTTTATTTCTCAGTGTAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30851404 186 + 172585720 AGGA-GGTTcattaagctg-------cc-ttatcttgaagttaccaggttttaggatctgtcaacttcccttgtgctgactctgtactctgaaaac-aagtaaacttcaag-------taaaattaccctaggggagaagcaggaactgacagaccaacatgagtgttttcacttatgagcagttttatttctcagtgtaaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30140890 186 - 170955103 AGGA-GGTTCATTAAGCTG-------CC-TTATCTTGAAGTTACCAGGTTTTAGGATCTGTCAACTTCCCTTGTGCTGACTCCGTACTCTGAAAAC-AAGTAAACTTCAAG-------TAAAATTACCCTAGGGGAGAAGCAGGTACTGACAGACCAACATGAGTGTTTTCACTTATGAGCAGTTTTATTTCTCAGTGTAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     390107 186 +   1495729 AGGA-GGTTcattaagctg-------cc-ttatcttgaagttaccaggttttaggatctgtcaacttcccttgtgctgactccgtactctgaaaac-aagtaaacttcaag-------taaaattaccctaggggagaagcaggaactgacagaccaacatgagtgttttcacttatgagcagttttatttctcagtgtaaga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     491811 186 -    863181 AGGA-GGTTCATTAAGCTG-------CC-TTATCTTGAAGTTACCAGGTTTTAGGATCTGTCAACTTCCCTTGTGCTGACTCCGTACTCTGAAAAC-AAGTAAACTTCAAG-------TAAAATTACCCTAGGGGAGAAGCAGGTACTGACAGACCAACATGAGTATTTTCACTTATGAGCAGTTTTATTTCTCAGTGTAAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29640419 186 -  71996105 AGGA-GGTTCATTAAGCTG-------CC-TTATCTTGAAGTTACCAGGTTTTAGGATCTGTCCACTTCCCTTGTGCTGACTCCGTACTCTGAAAAC-AAGTAAACTTCAAG-------TAAAATTACCCTAGGGGACAAGCAGGTACTGACAGACCAACATGAGTGTTTTCACTTATGAGCAGTTTTATTTCTCAATGTAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     373245 186 -    735854 AGGA-GGTTcattaagctg-------cc-ttatcttgaagttaccaggttttaggatctgtcaacttcccttgtgctgactccgtactctgaaaac-aagtaaacttcaag-------taaaattaccctaggggagaagcaggtactgacagaccaacatgagtattttcacttatgagcagttttatttctcagtgtaaga
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     278792 186 -   1829203 AGGA-GGTTCATTAAGCTG-------CC-TTATCTTGAAGTTACCAGGTTTTAGGATCTATCCACTTCCCTTGTGCTGACTCTGTACTCTGAAAGC-AAGTAAACTTCAAG-------TAAAATTACCCTAAGGGAGAAGCAGGTACTGACAGACCAACATGAGTGTTTTCACTTATGAGCAGTTTTATTTCTCAGTGTAAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30478458 186 + 171630274 AGGA-GCTTCGTTAAGCTA-------CC-TTATCTTGAAGTTTCCAGGTTTTAGGATGTATCCACTTCTCCTGTGCTGACTGCATACTCCAAAAGC-AAGTAAACTTCAAG-------TAAAATTACCCTCAGGGAGAAGCAGCTGCTGACAGACCAACATGAGTGTTTCCACTTATGAGCAGTTTTATTCCTCAGTGTGAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           284475 187 +    515838 AGGAGGTTTCGTTAAGCTA-------CC-TTATCTTGAAGTTACCAGGTTTTAGGATGTATCCACTTCTCCTGTGCTGACTGCATACTCCAAAAGC-AAGTAAACTCCAAG-------TGAAATTACCCTAGGGGAGAAGCAGGTGCTGACAGACCAACATGAGTGTTTTCGCTTATGAGCAGTTTTATTCCTCAGTGTGAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     913654 186 -   1771730 AGGA-GGTTCGTTAAGCTA-------CC-TTATCTTGAAGTTACCAGGTCTTAGGATGTATCCACTTCTCCTGTGCTGACTGCATACTCCAAAAGC-AAGTAAACTTCAAG-------TAAAATTACCCTAGGGGAGAAGCAGGTGCTGACAGACCAACATGAGTGTTTTCACTTATGAATAGTTTTATTCCTCAGTGTGAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      94698 178 -    486031 AGGA-GGTTCGTTAAGCTA----------------TGAAGTTACCAGGTTTTAGGATGTATCCACTTCTCCTGTGCTGACTGCATACTCCAAAAGC-AAGTAAACTTCAAG-------GAAAATTACCCTAGGGGAGAAGCAGGTGCTGACAGACCAACATGAGTGTTTTCACTTAGGAGCAGTTTTATTCCTCAATGTGAGA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     188238 182 -   1411461 AGGA-GGTCCATCCAGCTG-------CC-TGGCCTTGAAGCCACCATGTTTCAGGATCTGCCCACTTCCCC--TGCTGACTCCACACTCGGAAAGC-AAGGAAACTTCGAG-------TAAAGTTA--CTAGGGGAGGAGCAGGTACTGATAGGCCAATATGAGTATTTTCACTCACTAGCAGTTTTAGGTTTCAGTGTAAGA
i proCoq1.NW_012149775v1   I 783 I 1866
s otoGar3.GL873550           328880 167 +  18854210 CAGA-GGTTCATCCAGCTG-------CCTTTGTCTTGAAGCTATCATGTTGTA-GATCTATCTACTTCCTC--TGCTGACTCTACATTCTAAAAGC-AAGTAAGCTTCAAGTATTAAATAAAATTACCCTAGGGGAGGACC------------------------ATTTTCACTTGCTGGCAGTTTTATTTTTCAGTGCAAGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58105872 141 -  94987271 TGGA-GGTATATC-AGTCA-------CC-TTACTGGGAAGTCATCAAATCT------------------------------------TTCAAAAGG-GAGTAAGCTTCAAG------------TTATCT--AGGGAGGAACATACACTGATAGATTGGAA-GAGTATCTTCACGCTCTGGCAGTTTTACTTCTCAATTTAAGA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26348873 130 +  26524999 --GG-GGCACCCAACGCTGGGTCCCTCT-TCCTCTCACAGATGCCAGG---------------------------------------TGCAGAGTT-GGGTAGATTTCAGG-------CAGAACGAC--------AAGAGC--------ACAGG------TGAGTATCTTCACTCACTCGGACTCGTATTTCTCAGTGTGAGA
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            42898 169 +     53444 AGGG-GGTTC-TTGAGGTG-------CT-TTCTCTTTAAGTTACTGTGTTTCAGGGCCTATCCACTTCCTCTGCTCCAGGGGAACACTCCAAGGACAAAGTAAACATCAAG-------GAAGATTGCCCAGGGGGAA----------------TCCAACAGGAGTCCTTTCCCTCACCAGC-TCTTTAGTTCTCAGTGTAAAA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I

a score=106708.000000
s hg38.chr6_GL000254v2_alt  1496056 10 +   4827813 CATATAAATT
s panTro5.chr6             30365488 10 + 175400573 catataaatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30599818 10 + 173848474 CATATAAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     306902 10 +   2037526 CATATAAATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74973382 10 + 122973662 CATATAAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30851590 10 + 172585720 catataaatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30141076 10 - 170955103 CATATAAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     390293 10 +   1495729 catataaatt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     491997 10 -    863181 CATATAAATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29640605 10 -  71996105 CATATAAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     373431 10 -    735854 catataaatt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     278978 10 -   1829203 CATATAAATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30478644 10 + 171630274 CATAGAAATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           284662 10 +    515838 CATAGAAATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     913840 10 -   1771730 CATAGAAATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      94876 10 -    486031 CATAGAAATT
i aotNan1.NW_018496901v1   C 0 C 0
s mm10.chr17               58106013 10 -  94987271 AATATAACTT
i mm10.chr17               C 0 I 1418
s canFam3.chr35            26349003 10 +  26524999 AGTTCACATT
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            43067 10 +     53444 AGGCTAAATG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e proCoq1.NW_012149775v1     188420 1866 -   1411461 I
e otoGar3.GL873550           329047  0 +  18854210 C

a score=1941391.000000
s hg38.chr6_GL000254v2_alt  1496066 203 +   4827813 GTTCTCACTGACATATAACTATtaaaagaaaaataaaataaaacaatttaaaaagaagaaatataaaTTGTATTTCTGAATCCAAGTCACCTGTGGGG-GTGTAGCCAGCATTAAAATAATCGCCAGGACCCATGCAGGCATCTATCTCTGAATGAGGCAGTGCAGCATAGCAGTTAAGAGCT--------------------------------------------------------------------------------------------------------------------------------------------------CTTGGGTCAGACATGGATGAA
s panTro5.chr6             30365498 203 + 175400573 gTTCTCACTGACATATAACTATtaaaagaaaaataaaataaaacaatttaaaaagaagaaatataaaTTGTATTTCTGAATCCAAGTCACCTGTGGGG-GTGTAGCCAGCATTAAAATAATCGCCAGGACCCATGCAGGCATCTATCTCTGAATGAGGCAGTGCAGCATAGCAGTTAAGAGCT--------------------------------------------------------------------------------------------------------------------------------------------------CTTGGGTCAGACACGGATGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30599828 203 + 173848474 GTTCTCACTGACATATAACTATtaaaagaaaaataaaataaaacaatttaaaaagaagaaatataaaTTGTATTTCTGAATCCAAGTCACCTGTGGGG-GTGTAGCCAGCATTAAAATAATCGCCAGGACCCATGCAGGCATCTATCTCTGAATGAGGCAGTGCAGCATAGCAGTTAAGAGCT--------------------------------------------------------------------------------------------------------------------------------------------------CTTGGGTCAGACACGGATGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     306912 202 +   2037526 GTTCTCACTGACATATAACTATtaaaagaaaaataaaataaaacaatttaaaaagaagaaatataaaTTGTGTTTCTGAATCCAAGTCACCTGT-GGG-GTGTAGCCAGCATTAAAATAATCGCCAGGACCCATGCAGGCATCTATCTCTGAATGAGGCAGTGCAGCATAGCAGTTAAGAGCT--------------------------------------------------------------------------------------------------------------------------------------------------CTTGGGTCAGACACAGATGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74973392 199 + 122973662 GTTTTCACTGACATataactattaaaataaaaat----taaaataatttaaaaagaagaaatataaatTGTGTTTCTGAATCCCAGTCACCTGTGGGG-GTGTAGCCCGCATTAAAATAATCGCCAGGACCCATGCAGGCATCTATCTCTGAATGAGGCAGTGCAGCATAGCAGTTAAGAGCT--------------------------------------------------------------------------------------------------------------------------------------------------CTTGGGTCAGACACGGATGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30851600 196 + 172585720 gTTTTCACTGACATATGACTATtaaaagaa-------ataaaataatttaaaaagaagaaatataaaTTGTATTTCTGAATCCAAGTCACTTGTGGGG-GTGTAGCCAGCATTAAAATAATCACCAGGACCCATGCAGGCATCTCTCTCTGAATGAGGCAGCGCAGCACAGCAGTTAAGAGTT--------------------------------------------------------------------------------------------------------------------------------------------------CCTGGGTCAGACACGGATGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30141086 196 - 170955103 GTTTTCACTGACATATGACTATTAAAAAAA-------ATAAAATAATTTAAAAAGAAGAAATATAAATTGTATTTCTGAATCCAAGTCACTTGTGGGG-GTGTAGCCAGCATTAAAATAATCACCAGGACCCATGCAGGCATCTCTCTCTGAATGAGGCAGCGCAGCACAGCAGTTAAGAGTT--------------------------------------------------------------------------------------------------------------------------------------------------CCTGGGTCAGACACGGATGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     390303 196 +   1495729 gTTTTCACTGACATATGACTATtaaaagaa-------ataaaataatttaaaaagaagaaatataaaTTGTATTTCTGAATCCAAGTCACTTGTGGGG-GTGTAGCCAGCATTAAAATAATCACCAGGGCCCATGCAGGCATCTCTCTCTGAATGAGGCAGCGCAGCACAGCAGTTAAGAGTT--------------------------------------------------------------------------------------------------------------------------------------------------CCTGGGTCAGACACGGATGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     492007 196 -    863181 GTTTTCACTGACATATGACTATTAAAAAAA-------TTATAATAATTTAAAAAGAAGAAATATAAATTGTATTTCTGAATCCAAGTCACTTGTGGGG-GTGTAGCCAGCATTAAAATAATCACCAGGACCCATGCAGGCATCTCTCTCTGAATGAGGCAGCGCAGCACAGCAGTTAAGAGCT--------------------------------------------------------------------------------------------------------------------------------------------------CCTGGGTCAGACACGGATGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29640615 194 -  71996105 GTTTTCACTGACATATGACTATTAAAAAAA---------ATAATAATTTAAAAAGAAGAAATATAAATTGTATTTCTGAATCCAAGTCACTTGTGGGG-GTGTAGCCAGCATTAAAATAATCACCAGGACCCATGCAGGCATCTCTCTCTGAATGAGGCAGTGCAGCACAGCAGTTAAGAGCT--------------------------------------------------------------------------------------------------------------------------------------------------CCTGGGTCAGACACGGATGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     373441 196 -    735854 gTTTTCACTGACATATGACTATTAAAAAAA-------TTATAATAATTTAAAAAGAAGAAATATAAATTGTATTTCTGAATCCAAGTCACTTGTGGGG-GTGTAGCCAGCATTAAAATAATCACCAGGACCCATGCAGGCATCTCTCTCTGAATGAGGCAGCGCAGCACAGCAGTTAAGAGCT--------------------------------------------------------------------------------------------------------------------------------------------------CCTGGGTCAGACACGGATGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     278988 198 -   1829203 GTTTTCACTGACATATGACTATTAAAAGAAAA-----ATCAAATAATTTAAAAAGAAGAAATATATATTGTATTTCTGAATCCAAGTCACTTGTGGGG-GTGTAGCCAGCATTGAAATAATCACCAGGACCCATGCAGGCATCTCTCTCTGAATGAGGCAGCGCAGCACAGCAGTTAAGAGCT--------------------------------------------------------------------------------------------------------------------------------------------------CCTGGGTCAGACACGGATGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30478654 187 + 171630274 GTTTTCACTGACATGTAACTATTAAAAGAAAA-----AGAAGAGAATTTAAA---AAGAAATATAAATTGTATTTCTGAATCCAAGTCACTTGT---G-GTGTAGCCAGCATT----TAATCACTAAGACCCATGCAGGCAT-TATCTCTGAATGAGGcagtgcagcatagcggttaagagcc--------------------------------------------------------------------------------------------------------------------------------------------------cttgggtcagacacggattaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           284672 197 +    515838 ATTTTCACTGCCATATAACTATTAAAAGAAAA-----AGAAGAGAATTTAAAAAGAAGAAATATAAATTGTATTTCTGAATCCAAGTCACTTGT-GGG-GTGTAGCCAGCATTAAAATAATCACTAGGACCCATGCAGGCATCTGTCTCTGAGTGAGGCGGTGCAGCACAGCGGTTAAGAGCC--------------------------------------------------------------------------------------------------------------------------------------------------CTTGGGTCAGACACGGATTAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     913850 197 -   1771730 GTTTTCACTGCCATATAACTATTAAAAGAAAA-----AGAAGAGAATTTAAAAAGAAGAAATGCAAATTGTATTTCTGAATCCAAGTCACTTGT-GGG-GTGTAGCCAGCATTAAAATAATCACTAGGACCCATGCAGGCATCTATCTCTGAGTGAGGCAGTGCAGCACAGCGGTTAAGAGCC--------------------------------------------------------------------------------------------------------------------------------------------------CTTGGGTCAGACACGGATTAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      94886 193 -    486031 GTTTTCACTGACATATAACTATTAAAAG-AAA-----AGAAGAGAATTTAAA---AAGAAATATAAATTGTATTTCTGAATCCAAGTCACTTGT-GGG-GTGTAGCCAGCATTAAAATAATCACTAGGACCCATGCAGGCATCTATCTCTGAATGAGGCAGTGCAGCACAGCGGTTAAGAGCC--------------------------------------------------------------------------------------------------------------------------------------------------CTTGGGTCAGACACGGATTAA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           329047 291 +  18854210 -----------------------------------------------------------AATGTAAATTGTCTTTCTGAATCCAAGTCATTCATGGGGAGTGTAGCCAGCCTTCAAGTATTCACCAGGACCCACCTGGGCATCAATTTCTGAATAAGGcagtacagtataatggttaagaactcttgaggccaggtatggtggctcacacatgtagtcccagcacttgaggagactgagtcaagaggattccttgaggccaggagttcaagaccagtgtgggcaacatagtaagaccctgtctccataaaaaacaaaaaataaaagagctctgagtcagacatgaattaa
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26349013 126 +  26524999 ---------------------------------------------------------------------GTCCTTCTGGGTCCAGGTTGCACGTGGGGAGCATGGCCAGCATTAGCTTGTTCTCAAGGACCCA---GCGCACCTGTTTCTGAATGAGGCCATGCCGCATCATGGCTAAGACCT--------------------------------------------------------------------------------------------------------------------------------------------------CAT-AGTTGCACAAGG-----
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            43077 110 +     53444 ---------------------------------------------------------------------ATTTTTCTGAACCCACATCACTTAT-GGG-GTGTGG----------------------GACCCACCAGGGTCCTCATTTCCAAACAAAGTTGTGCAGTCCTTTGGTGAAGAGCT--------------------------------------------------------------------------------------------------------------------------------------------------C-TGAGTCACACAAGGATTAA
i dasNov3.JH567297         C 0 I 923
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58106023 1418 -  94987271 I
e proCoq1.NW_012149775v1     188420 1866 -   1411461 I

a score=239252.000000
s hg38.chr6_GL000254v2_alt  1496269 21 +   4827813 ----CTGGTTGCATGATCTTGGCTC-
s panTro5.chr6             30365701 21 + 175400573 ----CTGGTTGCATGATCTTGGCTT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30600031 21 + 173848474 ----CTGGTTGCATGATCTTGGCTT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     307114 21 +   2037526 ----CTGGTTGCATGATCTTGGCTC-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74973591 21 + 122973662 ----CTGGTTGCATGATCTTGGCTA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30851796 21 + 172585720 ----CTGGTTGCGTAATCTTGGCTA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30141282 21 - 170955103 ----CTGGTTGCGTAATCTTGGCTA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     390499 21 +   1495729 ----CTGGTTGCGTAATCTTGGCTA-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     492203 21 -    863181 ----CTGGTTGCGTGATCTTGGCTA-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29640809 21 -  71996105 ----CTGGTTGCATAATCTTGGCTA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     373637 21 -    735854 ----CTGGTTGCGTGATCTTGGCTA-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     279186 21 -   1829203 ----CTGGTTGCGTGATCTTGGCTA-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30478841 21 + 171630274 ----ctgggtgcatgatcttggcta-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           284869 21 +    515838 ----CTGGTTGCATGATCTTGGCTA-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     914047 21 -   1771730 ----CTGGTTGCATGATCTTGGCTA-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      95079 21 -    486031 ----CTGGTTGCATGATCTTGGCTA-
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           329338 25 +  18854210 aaatctagctgtgtgatgttagcta-
i otoGar3.GL873550         C 0 I 215
s canFam3.chr35            26349139 22 +  26524999 ----GTGGCTGCGTAACCTCGGCTGC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58106023 1418 -  94987271 I
e dasNov3.JH567297            43187 923 +     53444 I
e proCoq1.NW_012149775v1     188420 1866 -   1411461 I

a score=284015.000000
s hg38.chr6_GL000254v2_alt  1496290 29 +   4827813 ---------GTTACC----------------------AAGATAAA------GTGA-CACAAGGTGTG--------------
s panTro5.chr6             30365722 29 + 175400573 ---------GTTACC----------------------AAGATAAA------GTGA-CACAAGATGTG--------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30600052 29 + 173848474 ---------GTTACC----------------------AAGATAAA------GTGA-CACAAGATGTG--------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     307135 29 +   2037526 ---------GTTACC----------------------AAGATAAA------GTGA-CACAAGGTGTG--------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74973612 29 + 122973662 ---------GTTACC----------------------AAGATAAA------GTGA-CACAAGGTGTG--------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30851817 29 + 172585720 ---------GTTACC----------------------AAGATAAA------GTGA-CACAAGGTGTG--------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30141303 29 - 170955103 ---------GTTACC----------------------AAGATAAA------GTGA-CACAAGGTGTG--------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     390520 29 +   1495729 ---------GTTACC----------------------AAGATAAA------GTGA-CACAAGGTGTG--------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     492224 29 -    863181 ---------GTTACC----------------------AAGATAAA------GTGA-CACAAGGTGTG--------------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29640830 29 -  71996105 ---------GTTACC----------------------AAGATAAA------GTGA-CACAAGGTGTG--------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     373658 29 -    735854 ---------GTTACC----------------------AAGATAAA------GTGA-CACAAAGTGTG--------------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     279207 29 -   1829203 ---------GTTAGC----------------------AAGATAAA------GTGA-CACAAGGTGTG--------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30478862 29 + 171630274 ---------gctacc----------------------aAGATAGA------GAGA-CACAAGGTGTG--------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           284890 28 +    515838 ---------GCTACC----------------------AAGATAGA------GTGA-CAC-AGGTGTG--------------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     914068 28 -   1771730 ---------GCTACC----------------------AAGATAGA------GTGA-CAC-AGGTGTG--------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      95100 29 -    486031 ---------GCTACC----------------------AAGATAGA------GTGA-CACGAGGTGTG--------------
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           329578 29 +  18854210 ---------gttacc----------------------gtggttaa------gtga-tagaaaatgtg--------------
i otoGar3.GL873550         I 215 C 0
s canFam3.chr35            26349161 81 +  26524999 GTGACCTCAGTTGCCCAGACAACCCTCACTTCCACCAAAGATGAAGACGCTGTGACCACAGGAGGCACCTCCTGCCTGTCT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58106023 1418 -  94987271 I
e dasNov3.JH567297            43187 923 +     53444 I
e proCoq1.NW_012149775v1     188420 1866 -   1411461 I

a score=171673.000000
s hg38.chr6_GL000254v2_alt  1496319 15 +   4827813 TAAAGCTCCCGAGCT
s panTro5.chr6             30365751 15 + 175400573 TAAAGCTCCCGAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30600081 15 + 173848474 TAAAGCTCCCGAGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     307164 15 +   2037526 TAAAGCTCCCGAGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74973641 15 + 122973662 TAAAGCTCCCGAGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30851846 15 + 172585720 TAAAGCTCCCCAACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30141332 15 - 170955103 TAAAGCTCCCCAACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     390549 15 +   1495729 TAAAGCTCCCCAACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     492253 15 -    863181 TAAAGCTCCCCAACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29640859 15 -  71996105 TAAAGCTCCCCAACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     373687 15 -    735854 TAAAGCTCCCCAACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     279236 15 -   1829203 TAAAGCTCCCCAACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30478891 15 + 171630274 TAAAGCTCCCCAGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           284918 15 +    515838 TAAAGCTCCCCAGCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     914096 15 -   1771730 TAAAGCTCCCCAGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      95129 15 -    486031 TAAAGTTCCCCAGCA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           329607 15 +  18854210 taaagcCCCCCAACA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26349242 15 +  26524999 TGGAGTCCGGGAATG
i canFam3.chr35            C 0 I 4
s dasNov3.JH567297            44110 15 +     53444 TAAAATTCTCCAGCA
i dasNov3.JH567297         I 923 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58106023 1418 -  94987271 I
e proCoq1.NW_012149775v1     188420 1866 -   1411461 I

a score=2432449.000000
s hg38.chr6_GL000254v2_alt  1496334 194 +   4827813 GCAAGCCAGGATCTTCATACACATACA----------TTTTAGA-------------------GGATAATA-GTCCTTTCAAAAGACACAGC----------TAAAGCCAATAAAAATAAACAGAAAAATAGGATCTACCTTTC--TGGAATCACAGGTTTGGGTgctttgcatatgttttatcattatataggcacttgtgtgtgtctgtattttttt--ga-atatacaacatttta
s panTro5.chr6             30365766 196 + 175400573 GCAAGCCAGGATCTTCATACACATACA----------TTTTAGA-------------------GGATAATA-GTCCTTTCAAAAGACACAGC----------TAAAGCCAATAAAAATAAACAGAAAAATAGGATCTACTTTTTAGTGGAATCACAGGTTTGGGTgctttggatatgttttatcattatataggcacttgtgtgtgtctgtattttttt--ga-atatacaacatttta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30600096 196 + 173848474 GCAAGCCAGGATCTTCATACACATACA----------TTTTAGA-------------------GGATAATA-GTCCTTTCAAAAGACACAGC----------TAAAGCCAATAAAAATAAACAGAAAAATAGGATCTACTTTTTAGTGGAATCACAGGTTTGGGTgctttggatatgttttatcattatataggcacttgtgtgtgtctgtattttttt--ga-atatacaacatttta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     307179 196 +   2037526 GCAAGCCAGGATCTTCATACACATACA----------TTTTAGA-------------------GGATAATA-GTCCTTTCAAAAGACACAGC----------TAAAGCCAATAAAAATAAACAGAAAAATAGGATCTACTTTTTAGTGGAATCACAGGTTTGGGTgctttggatttgttttatcattatataggcacttgtgtgtgtctgtattttttt--ga-atatacaacatttta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74973656 194 + 122973662 TCAAGCCAGGATCTTCATACACATACA----------TGTTAGA-------------------GGATAATA-GTCCTTTCAAAAG--ACAGC----------TAAAGCCAATAAAAATAAACAGAAAAATAGGATATACTTTTTAGTGGAATCACAGGTTTGGGTGCTTTGGATATGTTTTATCATTATATAGGCACCTGTGTGTGTCTGTATTTTTTT--GA-ATATAAAACATTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30851861 196 + 172585720 GCAAGCCAGGATCTTCATACACATACA----------TTTTAGA-------------------GGATAACA-GTCCTTTCAAAAGACATGGC----------TAAAGCCAATAAAAATAAACAGAAAAATAGGATCTACTTTTGAGTGGAATCACAGGTTTGGGTgttttggatatgttttatcattatataggcacttgtgtgtgtctatattttttt--ga-atatacaacatttta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30141347 196 - 170955103 GCAAGCCAGGATCTTCATACACATACA----------TTTTAGA-------------------GGATAATA-GTCCTTTCAAAAGACATGGC----------TAAAGCCAATAAAAATAAACAGAAAAATAGGATCTACTTTTGAGTGGAATCACAGGTTTGGGTGTTTTGGATATGTTTTATCATTATATAGGCACTTGTGTGTGTCTATATTTTTTT--GA-ATATACAACATTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     390564 196 +   1495729 GCAAGCCAGGATCTTCATACACATACA----------TTTTAGA-------------------GGATAATA-GTCCTTTCAAAAGACATGGC----------TAAAGCCAATAAAAATAAACAGAAAAATAGGATCTACTTTTGAGTGGAATCACAGGTTTGGGTgttttggatatgttttatcattatataggcacttgtgtgtgtctatattttttt--ga-atatacaacatttta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     492268 196 -    863181 GCAAGTCAGGATCTTCATACACATACA----------TTTTAGA-------------------GGATAATA-GTCCTTTCAAAAGACATGGC----------TAAAGCCAATAAAAATAAACAGAAAAATAGGATCTACTTTTGAGTGGAATCACAGGTTTGGGTgttttggatatgttttatcattatataggcacttgtgtgtgtctatattttttt--ga-atatacaacatttta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29640874 196 -  71996105 GCAAGCCAGGATCTTCATACACATACA----------TTTTAGA-------------------GGATAATA-GTCCTTTCAAAAGACATGGC----------TAAAGCCAATAAAAATAAACAGAAAAATAGGATCTACTTTTGAGTGGAATCACAGGTTTGGGTGTTTTGGATATGTTTTATCATTATATAGGCACTTGTGTGTGTCTATATTTTTTT--GA-ATATACAACATTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     373702 196 -    735854 GCAAGTCAGGATCTTCATACACATACA----------TTTTAGA-------------------GGATAATA-GTCCTTTCAAAAGACATGGC----------TAAAGCCAATAAAAATAAACAGAAAAATAGGATCTACTTTTGAGTGGAATCACAGGTTTGAGTgttttggatatgttttatcattatataggcacttgtgtgtgtctatattttttt--ga-atatacaacatttta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     279251 196 -   1829203 GCAAGCTAGGATCTTCATACACATACA----------TTTTAGA-------------------GGATAATA-GTCCTTTCAAAAGACATGAC----------TAAAGCCAATAAAAATAAACAGAAAAATAGGATCTACTTTTGAGTGGAATCACAGGTTTGGGTgttttggatatgttttatcattatataggcacttgtgtgtgtctatattttttt--ga-atatacaacatttta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30478906 195 + 171630274 GCAAGCCAGGGTCTTTATACACATACA----------TTTTAGT-------------------GGATAATA-GTCCATTTAAAAGACACAGC----------TAAAGCCAACAAAAATACACAGAAAAATAGGATCTACCTTTTAGTGGAATCACAGGTTTGGGTGCTTTGGCTGTGTTTTATCCTTATATAGGCACTTGTGTGTGTCTAAATTTTTT---GA-ATATGCAACATTTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           284933 197 +    515838 GCAAGCCAGGATCTTTATACATATACA----------TTTTAGA-------------------GGGTAACA-GTCCATTTAAAAAACACAGC----------TAAAGCCAACAAAAATGAACAGAAAAATAGGATCTACTTTTTAGTGGAATCACAGGTTTGGGTGCTTTGGATATGCTTTATCATTATATAGGCACTTGCGTGTGTCTATATTTTTTT-AAA-ATATACAACATTTTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     914111 196 -   1771730 GCAAGCCAGGGTCTTTATACACATACA----------TTTTAGA-------------------GGATAATA-GTCCATTTAAAAAACACAGC----------TAAAGCCAACAAAAATAAACAGAAAAATAGGATCTACTTTTTAGTGGAGTCACAGGTTTGGGTGCTTTGGATATGTTTTATCATTATATAAGCACTTGCGGGTGTCTATATTTTTTT--GA-ATATACAACATTTTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      95144 196 -    486031 GCAAGCCAGGATCTTTATACACATACA----------TTTTAGA-------------------GGGTAATA-GTCCATTTAAAAGACACAGC----------TAAAGCTGACAAAAATAAACAGAAAAATAGGATCTACTTTTTAGTGGAATCACAGGTTTCAGTGCTTTGGACATGTTTTATCATTATATAGGCACTTGCATGTGTCTATATTTTTTT--GA-ATATACAACATTTTA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           329622 205 +  18854210 GCAGGCCAGGATCTTCATACACATATACAGGATAGGCTAATAGA-------------------GGCCAATA-GTCATTTTTAAAGACCCAGC----------TAAAACCAATAAAAATAAACAGAAAAATATAATTCACTTTTTAGTAGAATCTCAGGTTTTGGAGTTTGGGATATGTTTTAAA---ATACAGGCACTTGTATGTGTCTATTTTATTTTTGGA-ATATATAACATTTTA
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58107441 190 -  94987271 GCAGGAAGAGAACTTCATATACACGTA----------CTTTAGA-------------------GGTTCACA-GTCATTTT-AAATACTCAAG----------TAAAACCAGTACAAAGAGACAGGAAAATACAGTCCA--TTTTAGTGGAACATGGGGCTTGGGGGCTGTGAGTATATTTTGGCATTATATAGACACTTGTATATGCCATTATTTTTTA--GACATATAT----TTTGT
i mm10.chr17               I 1418 C 0
s canFam3.chr35            26349261 210 +  26524999 CGGTGACAGGATATC--TGCATGTCCT----------CCTTAGGGGTGGGGGGGCGGGGCCCTGGACACTACATCATTTAAAAAGACCCCCCCCCCCCCCAGTAACGCCAGTAAAAATAAA---------GGAACACAATCCTTGGAAGAACC-CAGGTTTGGGGGCTTCGGATGTGTATCAGCATCATACAGACA--TGTGTCTGTCTGTGGTTTT----GA-ACATCCAACATTTTA
i canFam3.chr35            I 4 I 502
s dasNov3.JH567297            44125 183 +     53444 ---GCCTGGGATCTTCATGTCCGTTTG----------TTTTGGA--------------------CCTAATA-ATCATTTTTTAATACCCAAC----------TAACCTCAATA-AAATGAACAGAAAAATTCAATCCACTTTTTGGTGAAAT---ATGTGTGGG-GCTTTGGATGTGTTTTATCATTTTATAGGAGTTTACGTGTATCTATACTTTTG---GA-AGA---GACATTTTA
i dasNov3.JH567297         C 0 I 1
e micMur3.chr6               367744 4591 + 123392446 I
e proCoq1.NW_012149775v1     188420 1866 -   1411461 I

a score=354007.000000
s hg38.chr6_GL000254v2_alt  1496528 28 +   4827813 atgagatactgcacactcccagggaaag
s panTro5.chr6             30365962 28 + 175400573 atgagatactgcacactcccagggaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30600292 28 + 173848474 atgagatactgcacactcccagggaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     307375 28 +   2037526 atgaggtactgcacactcccagggaaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74973850 28 + 122973662 ATGAGATACTGCGCACTCCCAGGGAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30852057 28 + 172585720 atgagatactgcacactttcagggaaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30141543 28 - 170955103 ATGAGATACTGCACACTTTCAGGGAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     390760 28 +   1495729 atgagatactgcacactttcagggaaag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     492464 28 -    863181 atgagatactgcacactttcagggaaag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29641070 28 -  71996105 ATGAGATACTGCACATTTTCAGGGAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     373898 28 -    735854 atgagatactgcacactttcagggaaag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     279447 28 -   1829203 atgagatactgcacacttccagggaaag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30479101 28 + 171630274 ATGAGATGCTGCACACTCCCAGGGAAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           285130 28 +    515838 ATGAGATACTGCACACTCCCAGGGAAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     914307 28 -   1771730 ATGAGATACTGCACATTCCCAGTGAAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      95340 28 -    486031 ATGAGATACTGCACACTCCCAGGGAAAG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           329828 28 +  18854210 ATGAAATAAGGAATACTCCCAGGGAAAA
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58107631 27 -  94987271 AGGAAATATTGAACAC-CCTGGAGAAAG
i mm10.chr17               C 0 I 1863
s dasNov3.JH567297            44309 27 +     53444 ATGAGATACTGAACACTCCCTGGAAAG-
i dasNov3.JH567297         I 1 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e proCoq1.NW_012149775v1     188420 1866 -   1411461 I
e canFam3.chr35            26349471 502 +  26524999 I

a score=3347570.000000
s hg38.chr6_GL000254v2_alt  1496556 308 +   4827813 caattcaat----ct--------ttaatccctggcttctgatctccacc----tcttttctacctg--------ctgaggtaaggatgaacaacagaacttctcaattgaattctaagcttgggcc-taagcacgctgtgccctctGCCTTTGAGTTTGCACCCTGGATGG-CTCCCCTCCTCCCAGGAGACCCAGTAGGGAGATGACAGAGCATTGTATTTTACATCTGAGCAGAGTAAAC--AGATGATGTTAAGGAGACTGTCAGTGAAGGGCATG--ATTATGCAAAATAAAATACAATAGTGACAAGAACA-AGAAAATAAAACATGGTCACTC
s panTro5.chr6             30365990 308 + 175400573 caattcaat----ct--------ctaatccctggcttctgatctccacc----tcttttctacctg--------ctgagctaaggatgaacaacagaacttctcaattgaattctaagcttgggcc-taagcacgctgtgccctctGCCTTTGAGTTTGCACCCTGGATGG-CTCCCCTCCTCCCAGGAGACCCAGTAGGGAGATGACAGAGCATTGTAGTTTACATCTGAGCAGAGTAAAC--AGATGATGTTAAGGAGACTGTCAGTGAAGGGCATG--ATTATGCAAAATAAAATACAGTAGTGACAAGAACA-AGAAAATAAAACATGGTCACTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30600320 308 + 173848474 caattcaat----ct--------ctaatccctggcttctgatctccacc----tcttttctacctg--------ctgagctaaggatgaacaacagaacttctcaattgaattctaagcttgggcc-taagcacgctgtgccctctGCCTTTGAGTTTGCACCCTGGATGG-CTCCCCTCCTCCCAGGAGACCCAGTAGGGAGATGACAGAGCATTGTAGTTTACATCTGAGCAGAGTAAAC--AGATGATGTTAAGGAGACTGTCAGTGAAGGGCATG--ATTATGCAAAATAAAATACAGTAGTGACAAGAACA-AGAAAATAAAACATGGTCACTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     307403 308 +   2037526 caattcaat----ct--------ctaatccctggcttatgatctccacc----tcttttctacctg--------ctgagctaaggatgaacaacagaacttctcaattgaattctaagcttgggcc-taagcacgctgtgccctctGCCTTTGAGTTTGCACCCTGGATGG-CTCCCCTCCTCCCAGGAGACCCAGTAGGGAGATGACAGAGCATTGTAGTTTACATCTGAGCAGAGTAAAC--AGATGATGTTAAGGAGACTGTCAGTGAAGGGCATG--ATTATGCAAAATAAAATACAATAGTGACAAGAACA-AGAAAATAAAACATGGTCACTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74973878 310 + 122973662 CAATTCAAT----CT--------CTAATCCCTGGCTTCTGATCTCCACC----TCTTTTCTACCTG--------CTGAGCTAAGGATGAATAACAGAACTTCTTAACTGAATTCTAAGCTTCAGCC-TAAGCACGCTGTGCCCTCTGCCTTTGAGTTTGCACCCTGGATGT-CTCCCCTCCTCCCAGGAGACCCAGTAGGGAGATGACAGAGCATTGTAGTTTACATCTGAGCAGAGTAAACAGAGATGATGTTAAGGAGACTGTCAGTGAAGGGCATG--ATTATGCAAAATAAAATACAATATTGACAAGAACT-AGAAAATAAAACATGGTCACTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30852085 310 + 172585720 caattcaat----ct--------ctaatccctggcttctgatctccccc----tcttttctacctg--------ctgagctaaggatgaacaacagaacttctcaattgaattctaagcttgggcc-taagcacgctgtgccttctgccttagagactgcaccctggatgg-ctcccctcctcccaggagacccagtaggaagatgacagagcattgtagtttacatctgagcagagtaaacagagatgatgttaaagagtctgtcagtgaagggcatg--attatgcaaaatgaaatacaatattgataagaact-agaaaataaaaCATGGTCACTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30141571 310 - 170955103 CAATTCAAT----CT--------CTAATCCCTGGCTTCTGATCTCCCCC----TCTTTTCTACCTG--------CTGAGCTAAGGATGAACAACAGAACTTCTCAATTGAATTCTAAGCTTGGGCC-TAAGCACGCTGTGCCTTCTGCCTTAGAGACTGCACCCTGGATGG-CTCCCCTCCTCCCAGGAGACCCAGTAGGGAGATGACAGAGCATTGTAGTTTACATCTGAGCAGAGTAAACAGAGATGATGTTAAAGAGTCTGTCAGTGAAGGGCATG--ATTATGCAAAATGAAATACAATATTGATAAGAACT-AGAAAATAAAATATGGTCACTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     390788 310 +   1495729 caattcaat----ct--------ctaatccctggcttctgatctccccc----tcttttctacctg--------ctgagctaaggatgaacaacagaacttctcaattgaattctaagcttgggcc-taagcacgctgtgccttctgccttagagactgcaccctggatgg-ctcccctcctcccaggagacccagtagggagatgacagagcattgtagtttacatctgagcagagtaaacagagatgatgttaaagagtctgtcagtgaagggcatg--cttatgcaaaatgaaatacaatattgataagaact-agaaaataaaaCATGGTCACTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     492492 310 -    863181 caattcaat----ct--------ctaatccatggcttctgatctccccc----tcttttctacctg--------ctgagctaaggatgaacaacagaacttctcaactgaattctaagcttgggcc-taagcacgctgtgccttctgccttagagactgcaccctggatgg-ctcccctcctcccaggagacccagtagggagatgacagagcattgtagtttacatctgagcagagtaaacagagatgatgttaaagagtctgtcagtgaagggcatg--attatgcaaaatgaaatacaatattgataagaact-agaaaataaaaCATGGTCACTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29641098 310 -  71996105 CAATTCAGT----CT--------CTAATCCCTGGCTTCTGATCTCCCCC----TCTTTTCTACCTG--------CTGAGCTAAGGATGAACAACAGAACTTCTCAATTGAATTCTAAGCTTGGGCC-TAAGCACGCTGTGCCTTCTGCCTTAGAGACTGCACCCTGGATGG-CTCCCCTCCTCCCAGGAGACCCAGTAGGGAGATGACAGAGCATTGTAGCTTACATCTGAGCAGAGTAAACAGAGATGATGTTAAAGAGTCTGTCAGTGAAGGGCATG--ATTATGCAAAATGAAATACAATATTGATAAGAACT-AGAAAATAAAACATGGTCACTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     373926 309 -    735854 caattcaat----ct--------ctaatccctggcttctgatct-cccc----tcttttctacctg--------ctgagctaaggatgaacaacagaacttctcaactgaattctaagcttgggcc-taagcacgctgtgccttctgccttagagactgcaccctggatgg-ctcccctcctcccaggagacccagtagggagatgacagagcattgtagtttacatctgagcagagtaaacagagatgatgttaaagagtctgtcagtgaagggcatg--attatgcaaaatgaaatacaatattgataagaact-agaaaataaaaCATGGTCACTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     279475 310 -   1829203 caattcaat----ct--------ctaatccctggcttgtgatctccccc----tcttttctacctg--------ctgagctaaggatgaacaatagaacttctcaactgaattctaagcttgggcc-taagcacgctgtgccttctgccttagagactgcaccctggatgg-ctcccctcctcccaggagacccagtagggagatgacagagcattatagtttacatctgagcagagtaaacagagatgatgttgaagagtctgtcagtgaagggcatg--attatgcaaaatgaaatacaatattgataagaagc-agaaaataaaaCATGGTCACTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30479129 306 + 171630274 CAATTCAAT----CT--------CTAATCCCTGGCTTCTGAT---CATA----TCTTTTCTACCTG--------CTGAGCTAAGGATGAACAGTGGAACTTCTCAATTGAGTTCTAAAGTTGAGCT-TAAGCACACTGTGCCCTCTGCCTTTGAGATTGTACCCT-GGTGG-CGCCCCTCCTCCCAGGAGACCTAGTAGGGAGATGATAGAGTTGTGTAGTTTACACCTGAGCAGAGAAAACAGAGACGATGTTAAAAAGACTGTCAGTGAAGGGCATG--ATTATGCAAAAGAAAATACAATACTGACAAGAACT-AGAAAATAAAACATGGTCACTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           285158 306 +    515838 CAATTCAAT----CT--------CTAATCCCTGGCTTCTGAT---CATA----TCTTTTCTACCTG--------CTGAGCTAAGGATGAACAGTGGAACTTCTCAGTTGAATTCTAAGGTTGGGCT-TAAGCACCCTGTGCCCTCCGCCTTTGAGATTGCACCCT-GATGGCCCCCCCTCCTCCCAGAAGACCTAGTAGGGAGATGATAGAGTGGTGTAGTTTACATCTGAGCAGAGAAAACAGAGACGATGTTAAAAGGACTGTCAGTCAAGGGCATG--ATTATGCAAAATGAAATACAATACAGA-ATGAACT-AGAAAATAAAACATAGTCACTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     914335 314 -   1771730 CAATTCAAT----CT--------CTAATCCCTGGCTTCTGAT---CTAA----GCTAAGTCACTTGTGGGGTGACTGAGCTAAGGACGAACAGTGGAATTTCTCAGTTGAATTCTAAGGTTGGGCT-TAAGCACGCTGTGCCCTCTGCCTTTGAGGTTGCACCCT-GATGG-CCTCCCTCCTCCCAGGAGACCTAGTAGTGAGATGATAGAGTGGTGTAGTTTACATCTGAGCAGAGAAAACAGAGATGATTTTAAAAAGACTGTCAGTGAAGGGCATG--ATTATGCAAAAGAAAATACAATACTGACAAGAACT-AGAAAATAAAACATGGTCACTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      95368 306 -    486031 CAATTCAGT----CG--------CTAATCCTTGGCTTCTGAT---CATA----TCTTTTTTACCTG--------CTGAGCTAAGGATGAACAGTGGAACTTCTCAGTTGAATTCTAAGGATGGGCC-TAAGCACGCTATGCCCTCTGCCTTTGAGATTGCACCCT-GATGG-GCCCCCTCCTCCCAGAAGACCTAGTAGGGAGATGATAGAGTGGTGTAGTTTACATCTGAGCAGAGAAAACAGAGATGATGTTAAAAATACTGTCAGTGAAGGGCATG--ATTATGCAAAAGAAAATACAATACTGACAAGAACT-AGAAAATAAAACATGGTCACTG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           329856 282 +  18854210 CAATACAATCTCCCT--------CCAATCCCTGGCTCTTGCTCTCCAAG----ATTTTTTT-------------C--------------------------ATCAGATGAATTCTTAGCCTGGGCCTTAAGCACTCTGTGCCCTGTCCCATTGAGGTTACACTCAGGATAG-TTCCCATCCTCCAAGAGGACAGAGTAGGGAAAAGATAGAACTTTGTAACTTATGTCTGAGCAGAGTAGAC--AGATAATGTTAAAGGTACTGTAAGTGAAGGGCATG--ATTACAAAGAATAAAATACAACATCAACAAAAACT-AGAAAATAAAATGTGGTCACTC
i otoGar3.GL873550         C 0 I 274
s dasNov3.JH567297            44336 278 +     53444 CAATCCAGC----CTACCTCCCACCACTCCCTGGTTCCTG-----CACCATGTTCTTCTCTACCTG--------CTGA--CAAGCTTCAACAGAACAACTTCTCTGGTGAATTC-------AGGCC-TCAGCATGCTGGGCC---------------------CTGGTTGC-TTCCCCTTCTCCCAAGGGACCCAGTGGGGAGCTGATAGGATACTTCAGTTTATGTCTGAGCAGAGTGAAT---GATAGTGTTCAA-AGATTGTCCATGAAGGATATGTCATAGTGTTAAA--------AATATCAACAAGAACTAAAAAAATAAAACGTGCCCACTC
i dasNov3.JH567297         C 0 I 303
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58107658 1863 -  94987271 I
e proCoq1.NW_012149775v1     188420 1866 -   1411461 I
e canFam3.chr35            26349471 502 +  26524999 I

a score=511134.000000
s hg38.chr6_GL000254v2_alt  1496864  63 +   4827813 TTCCATCCCATTTCTCAGATGTCACTACA-------------GTAGTCTCAATT---------------------------------------------ACG------------------------------GTAGT------------CTCAATTCTTTAGA
s panTro5.chr6             30366298  63 + 175400573 TTCCATCCCATTTCTCAGATATCACTACA-------------GTAGTCTCAATT---------------------------------------------ACG------------------------------GTAGT------------CTCAATTTTTTAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30600628  63 + 173848474 TTCCATCCCATTTCTCAGATATCACTACA-------------GTAGTCTCAATT---------------------------------------------ACG------------------------------GTGGT------------CTCAATTTTTTAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     307711  93 +   2037526 TTCCATCCCATTTCTCAGATGTCACTACA-------------GTAGTCTCAATT---------------------------------------------ACGGTAGTCTCAATTACGGTAGTCTCAATTCCAGTAGT------------CTCAATTCTTTAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74974188  63 + 122973662 TTCCATCCCATTTCTGGGATGTCACTACA-------------GTAGTCTCAACT---------------------------------------------ATG------------------------------ATAGT------------CTCAATTGTTTAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30852395  63 + 172585720 TTCCATCCCATTTCTCAGATGTCACTACT-------------GTAGTCACAACT---------------------------------------------ACG------------------------------GTAGT------------CTCAAGTCTTTAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30141881  63 - 170955103 TTCCATCCCATTTCTCAGATGTCACTACT-------------GTAGTCACAACT---------------------------------------------ACG------------------------------GTAGT------------CTCAAGTCTTTAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     391098  63 +   1495729 TTCCATCCCATTTCTCAGATGTCACTACT-------------GTAGTCACAACT---------------------------------------------ACG------------------------------GTAGT------------CTCAAGTCTTTAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     492802  63 -    863181 TTCCATCCCATTTCTCAGATGTCACTACT-------------ATAGTCACAACT---------------------------------------------ACG------------------------------GTGGT------------CTCAAGTCTTTAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29641408  63 -  71996105 TTCCATCCCATTTCTCAGATGTCACTACT-------------GTAGTCGCAACT---------------------------------------------ACG------------------------------GTAGT------------CTCAAGTCTTTAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     374235  63 -    735854 TTCCATCCCATTTTTCAGATGTCACTACT-------------ATAGTCACAACT---------------------------------------------ACG------------------------------GTAGT------------CTCAAGTCTTTAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     279785  48 -   1829203 TTCCATCCCATTTCTCAGATGTCACTACT-------------------------------------------------------------------------------------------------------GTAGT------------CTCAAGTCTTTAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30479435  63 + 171630274 TTCCATCCCATTTCTCAGATGTCACTACA-------------GTAGCCTCCATT---------------------------------------------ACA------------------------------GTAGT------------CTCCACTCTTTAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           285464  48 +    515838 TTCCATCCCATTTCTCAAATGTCAC----------------------------T---------------------------------------------ACA------------------------------ATAGT------------CTCCACTCTTTAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     914649  63 -   1771730 TTCCATCCCATTCCTCAGATGTCACTACA-------------GTAGTCTCCATT---------------------------------------------ACA------------------------------GTAGT------------CTCCACTCTTCAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      95674  63 -    486031 TTCCATCCCATTTCTCAGATGTCACTACA-------------GTAGTCTCCATT---------------------------------------------ACA------------------------------GTAGT------------CTCCACTCTTTAGG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           330412 133 +  18854210 TTCCACCCCACTTCTCAGATGTCACATTTGGTCCAGCCCTAAGCAGTCTCAACTTTTTAGGCcagtggttctcaacctgtgggttgcgaactgtactaaagg------------------------------gtagtggcattatgagaaccactgctttaGG
i otoGar3.GL873550         I 274 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58107658 1863 -  94987271 I
e dasNov3.JH567297            44614 303 +     53444 I
e proCoq1.NW_012149775v1     188420 1866 -   1411461 I
e canFam3.chr35            26349471 502 +  26524999 I

a score=2317176.000000
s hg38.chr6_GL000254v2_alt  1496927 220 +   4827813 CTAAAGGTCATAGGTCATCCAACTTATGCCCTGGCCTCCTTCTGGAATTCTTTTACCT--AGCA--------------------GTTTCTGAGCCCACAGCTGAGCTATTTGTGACCCATTTGCTCCCACTATCTCA--------------------------------------------------------------------------------------------------------------------------------------TTTCTTGACCTCAGATGGTAATCAACTGATCAGGAAGACAATTTCCCTA------------------------------GGGTTGAGT-------GTGGTC------CCTGGGTTATGATTTATGGCTATACCTTATGTCCTCCTGCC------
s panTro5.chr6             30366361 220 + 175400573 CTAAAGGTCATAGGTCATCCAACTTATGCCCTGGCCTCCTTCTGGAATTCTTTTACCT--AGCA--------------------GTTTCTGAGCCCACAGCTGAGCTATTTGTGACCCATTTGCTTCCACTATCTCA--------------------------------------------------------------------------------------------------------------------------------------TTTCTTGACCTCAGATGGTAATCAACTGATCAGGAAGACGATTTCCCCA------------------------------GGGTTGAGT-------GTGGTC------CCTGGGTTATGATTTGTGGCTATACCTTATGTCCTCCTGCC------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30600691 220 + 173848474 CTAAAGGTCATAAGTCATCCAACTTATGCCCTGGCCTCCTTCTGGAATTCTTTTACCT--AGCA--------------------GTTTCTGAGCCCACAGCTGAGCTATTTGTGACCCATTTGCTTCCACTATCTCA--------------------------------------------------------------------------------------------------------------------------------------TTTCTTGACCTCAGATGGTAATCAACTGATCAGGAAGACGATTTCCCCA------------------------------GGGTTGAGT-------GTGGTC------CCTGGGTTATGATTTGTGGCTATACCTTATGTCCTCCTGCC------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     307804 219 +   2037526 CTAAAGGTCGTAGGTCATCCAACTTATGCCCTGGCCTCCTTCTGGAATTCTTTTACCT--AGCA--------------------GTTTCTGAGCCCACAGCTGAGCTATTTGTGACCCATTTGCTTCCACTATCTCA--------------------------------------------------------------------------------------------------------------------------------------TTTCTTGACCTCAGATGGTAATCAACTGATCAGGAAGACAATTTCCCCA------------------------------GGGTTGAGT-------GTGGTC------CCTGGGTTATGATTTATGGCTATACCTTA-GTCCTCCTGCC------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74974251 220 + 122973662 CTAAAGGTCATAGGTCATCCAACTTATGCCCTGGCCCCCATCTGGAATTCTTTTACCT--AGCA--------------------GTTTCTGAGCCCACAGCTGAGCTATTTGTGACCCATTTGCTTCCACTATCTCA--------------------------------------------------------------------------------------------------------------------------------------TTTCTTGACATCAGATAGTAATCAACTGATCAGGAAGACAATTTCCCCA------------------------------GGATTGAGT-------GTGGTC------CCTGGGTTATGATTTATGGCTATACCTTATGTCTTCCTGCC------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30852458 221 + 172585720 CTAAATGTCATAGGTCATCCAACTTATGCCCTGGCCTTCTTCTGGAATTCTTTTACCT--AGCA--------------------ATTTCTGAGCCCACAGCTGAGCTATTTGTGACCCATTTGCTTCCACTATCTCA--------------------------------------------------------------------------------------------------------------------------------------TTTCTTGACCTCAGATGGTAATCAACTGATCAGGAAGACAATTTCCCCA-----------------------------GGGGCTGAGT-------GTGGTT------CTTGGGTTACGATTTATGGCTATGCCTTATGCCCGCCTGCC------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30141944 218 - 170955103 CTAAAGGTCATAGGTCATCCAACTTATGCCCTGGC---CTTCTGGAATTCTTTTACCT--AGCA--------------------ATTTCTGAGCCCACAGCTGAGCTATTTGTGACCCATTTGCTTCCACTATCTCA--------------------------------------------------------------------------------------------------------------------------------------TTTCTTGACCTCAGATGGTAATCAACTGATCAGGAAGACAATTTCCCCA-----------------------------GGGGCTGAGT-------GTGGTT------CTTGGGTTACGATTTATGGCTATGCCTTATGCCCGCCTGCC------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     391161 221 +   1495729 CTAAAGGTCATAGGTCATCCAACTTATGCCCTGGCCTTCTTCTGGAATTCTTTTACCT--AGCA--------------------ATTTCTGAGCCCACAGCTGAGCTATTTGTGACCCATTTGCTTCCACTATCTCA--------------------------------------------------------------------------------------------------------------------------------------TTTCTTGACCTCAGATGGTAATCAACTGATCAGGAAGACAATTTCCCCA-----------------------------GGGGCTGAGT-------GTGGTT------CTTGGGTTACGATTTATGGCTATGCCTTATGCCCGCCTGCC------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     492865 221 -    863181 CTAAAGGTCATAGGTCATCCAACTTATGCCCTGGCCTTCTTCTGGAATTCTTTTACCT--AGCA--------------------ATTTCTGAGCCCACAGCTGAGCTATTTGTGACCCATTTGCTTCCACTATCTCA--------------------------------------------------------------------------------------------------------------------------------------TTTCTTGACCTCAGATGGTAATCAACTGATCAGGAAGACAATTTCCCCA-----------------------------GGGGCTGAGT-------GTGGTT------CTTGGGTTACGATTTATGGCTATGCCTTATGCCCGCCTGCC------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29641471 220 -  71996105 CTAAAGGTCATAGGTCATCCAACTTATGCCCTGGCCTTCTTCTGGAATTCTTTTACCT--AGCA--------------------ATTTCTGAGCCCACAGCTGAGCTATTTGTGACCCATTTGCTTCCACTATCTCA---------------------------------------------------------------------------------------------------------------------------------------TTCTTGACCTCAGATGGTAATCAACTGATCAGGAAGAAAATTTCCCGA-----------------------------GGGGGTGAGT-------GTGGTT------CTTGGGTTACGATTTATGGCTATACCTTATGCCCGCCTGCC------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     374298 221 -    735854 CTAAAGGTCATAGGTCATCCAACTTATGCCCTGGCCTTCTTCTGGAATTCTTTTACCT--AGCA--------------------ATTTCTGAGCCCACAGCTGAGCTATTTGTGACCCATTTGCTTCCACTATCTCA--------------------------------------------------------------------------------------------------------------------------------------TTTCTTGACCTCAGATGGTAATCAACTGATCAGGAAGACAATTTCCCCA-----------------------------GGGGCTGAGT-------GTGGTT------CTTGGGTTACGATTTATGGCTATGCCTTATGCCCGCCTGCC------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     279833 221 -   1829203 CAAAAGGTCATAGGTCATCCAACTTATGCCCTGGCCTTCTTCTGGAATTCTTTTACCT--AGCA--------------------ATTTCTGAGCCCACAGCTGAGCTATTTGTGACCCATTTGCTTCCACTATCTCA--------------------------------------------------------------------------------------------------------------------------------------TTTCTTGACCTCAGATGGTAATCAACTGATCAGAAAGACAATTTCCCCA-----------------------------GGGGCTGAGT-------GTGGTT------CTTGGGTTATGATTCATGGCTATGCCTTATGTCCGCCTGCC------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30479498 220 + 171630274 CTGAAGGTCACAGGTCATCCAACTTATGCCCTGGCTTCCTTCTGGAATTCTTTTACCT--AGCA--------------------ATTTCTGAGCCCACAGCTGAGCTATTTGTGACCCATTTGCTTCCACTATCTCA--------------------------------------------------------------------------------------------------------------------------------------TTTCTTGGCCTCAT-TGGTAATCAACTAATCAGGAAGACAATTTCCCCA-----------------------------GGAGTGGAGT-------GTGGTC------CTTGAGTTATGATTTATAGCTATTCCTTATGTCCCCCTGCC------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           285512 220 +    515838 CTAAAGGGCACAGGTCATTCAACTTATGCCCTGGCCTCCTTCTGGGATTCTTTTACCT--AGTA--------------------ATTTCTGAGCCCACAGCTGAGCTATTTGTGACCCATTTGCTTCCACTATCTCA--------------------------------------------------------------------------------------------------------------------------------------TTTCTTGACCTCAT-TGGTAATCAGCTGATCAGGAAGACAATTTCCCCA-----------------------------GGGGTGGAGT-------GTGGTC------CTTGAGTTATGATTTATGACTATCCCTTATGTCTCCCTGTC------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     914712 207 -   1771730 CTAAAAGTTACAGGTCATCCAACTTATGCCCTGGCCTCCTTCTGGAATTCTTTTACCT--AGCA--------------------ATTTCTGAGCCCACAGCTGAGCTATTTGTGACCCATTTGCTTCCACTATCTCA--------------------------------------------------------------------------------------------------------------------------------------TTTCTTGACCTCAT-TGGTAATCAGCTGATCAGGAAGACAATTTCCCCA-----------------------------GGGGTG--------------------------GAGTTATGATTTATGGCTATCCCTTATGTCCCCCTGCC------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      95737 220 -    486031 CTAAAGGTCACAGGTCATCCAACTTATGCCCTGGCCTCCTTCTGGAATTATTTTACCT--AGCA--------------------ATTTCTGAGCCCACAGCTGAGCTATTTGCAACCCATTTGCTTCCACTATATCA--------------------------------------------------------------------------------------------------------------------------------------TTTCTTGACCTCAT-TGGTAATCAGCTGATCAGGAAAACAATTTCCCCA-----------------------------GGGGTGGGGT-------GTGGTC------CTTGAGTTATGATTTATGGCTATCCCTTATGTCCCGCTGCC------
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           330545 355 +  18854210 CTAAAGGTTATAGGTCATTCAACTTATACCCCTGAC--CTCCTGGGATT-TTTTACAC--AGTACAAGGGTGC-AGATGGTGCCATTTCTGCTCCCATATCTGAGCTCTTTATGATTCATTTGCTTCCACTATCTCAtttcttttttttttcttttttttttttttttGTGTGGTTtttttggccagggctgggtttgaacccaccacctcccgcatgtagggcctgtgcctcactcctttgagccacaggcgccgcccACCACCATCTCATTTCTTAACCTCAG----TCATCAATTGATGAGAAAGAAATTTTTCCAC-----------------------------AGGGTTAAAT-------GTGGTC------CTTGAGTTGAGGTTTATGGCCATGCCTCC------------------
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            44917 271 +     53444 CTAAGGGTCATAGGTCATCCAATCCATTCCCCTGCCTCCTCCC-CAGTTACTCTACATGGAGCACAAGTGTGCAAGGTGCT---ACTTCTGC-TCCACAGCAGAGCTACCTGTGACTCACTCT---------TCTCG--------------------------------------------------------------------------------------------------------------------------------------TTCCTTGGCCTCCGATGGTGACCAATGTATCAGGAGGCGGATTATCCTGAGGAAATGTGAGTGGACCTACTCAGAGGAGGGGCTGGGTAGATTAAGTGGCCACCACACTGGGGTTATGGTTTGTGGCTGTGCCT------CCCCTGCCTTCACC
i dasNov3.JH567297         I 303 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58107658 1863 -  94987271 I
e proCoq1.NW_012149775v1     188420 1866 -   1411461 I
e canFam3.chr35            26349471 502 +  26524999 I

a score=137211.000000
s hg38.chr6_GL000254v2_alt  1497147 10 +   4827813 CCCAGGCCCT
s panTro5.chr6             30366581 10 + 175400573 CCCAGGCCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30600911 10 + 173848474 CCCAGGCCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     308023 10 +   2037526 CCCAGGCCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74974471 10 + 122973662 CCCAGGCCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30852679 10 + 172585720 CCCAGGCCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30142162 10 - 170955103 CCCAGGCCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     391382 10 +   1495729 CCCAGGCCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     493086 10 -    863181 CCCAGGCCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29641691 10 -  71996105 CCCAGGCCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     374519 10 -    735854 CCCAGGCCCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     280054 10 -   1829203 CCCAGGCCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30479718 10 + 171630274 CCCAGGTCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           285732 10 +    515838 CCAAAGTCCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     914919 10 -   1771730 CCCAGGTCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      95957 10 -    486031 CCCAAGTCCT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     190286 10 -   1411461 CCCAGGCCCC
i proCoq1.NW_012149775v1   I 1866 C 0
s otoGar3.GL873550           330900 10 +  18854210 CCTAGGCCCT
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            45188 10 +     53444 CTCAAGGCTT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               367744 4591 + 123392446 I
e mm10.chr17               58107658 1863 -  94987271 I
e canFam3.chr35            26349471 502 +  26524999 I

a score=1600582.000000
s hg38.chr6_GL000254v2_alt  1497157 116 +   4827813 GCACCTTAATCTCACCCAGAAGTGGCAACACCAGGAGGAAGG------AGGCAGTGAGTGGTGTCG--GCTGGGGAT-GGCACACATCTG--CCCATAAGGACAATGGAGACAACCCAGTGCTCCA-G
s panTro5.chr6             30366591 117 + 175400573 GCACCTTAATCTCACCCAGAAGTGGCAACACCAAGAGGAAGG------AGGCAGTGAGTGGTGTCG--GCTGGGGAT-GGCACACATCTG--CCCATGAGGACAATGGAGACAACCCAGTGCTCCATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30600921 117 + 173848474 GCACCTTAATCTCACCCAGAAGTGGCAACACCAAGAGGAAGG------AGGCAGTGAGTGGTGTCG--GCTGGGGAT-GGCACACATCTG--CCCATGAGGACAATGGAGACAACCCAGTGCTCCATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     308033 117 +   2037526 GCACCTTAATCTCACCCAGAAGTGGCAACACCAGGAGGAAGG------AGGCAGTGAGTGGTGTCG--GCTGGGGAT-GGCACACATCTG--CCCATGAGGACAATGGAGACAACCCAGTGCTCCATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74974481 118 + 122973662 GCACCTTCATCTCAGCCAGAAGTGGCACCACCAGGAGGAAGG------AGGCAGTGAGTGGTGTCG--GCTGGGGATGGGCACACATCTG--CCCATGAGGACGATGGAGATAACCCAGTGGTCCATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30852689 117 + 172585720 GCACCTTCATCTCAGCCAGAAGTGGCACCACCAGGAGGAAGG------AGGCAGTGAGTGGTGCCG--GCTGGGGAT-GGCACACATCTG--CCCATGAGGACAATGGAGATGACCCAGTGCTCCATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30142172 117 - 170955103 GCACCTTCATCTCAGCCAGAAGTGGCACCACCAGGAGGAAGG------AGGCAGTGAGTGGTGCCA--GCTGGGGAT-GGCACACATCTG--CCCATGAGGACAATGGAGATGACCCAGTGCTCCATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     391392 117 +   1495729 GCACCTTCATCTCAGCCAGAAGTGGCACCACCAGGAGGAAGG------AGGCAGTGAGTGGTGCCG--GCTGGGGAT-GGCACACATCTG--CCCATGAGGACAATGGAGATGACCCAGTGCTCCATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     493096 117 -    863181 GCACCTTCATCTCAGCCAGAAGTGGCACCACCAGGAGGAAGG------AGGCAGTGAGTGGTGCCG--GCTGGGGAT-GGCACACATCTG--CCCATGAGGACAATGGAGATGACCCAGTGCTCCATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29641701 117 -  71996105 GCACCTTCATCTCAGCCAGAAGTGGCACCACCAGGAGGAAGG------AGGCAGTGAGTGGTGCCG--GCTAGGGAT-GGCACACATCTG--CCCATGAGGACAATGGAGATGACCCAGTGCTCCATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     374529 117 -    735854 GCACCTTCATCTCAGCCAGAAGTGGCACCACCAGGAGGAAGG------AGGCAGTGAGTGGTGCCG--GCTGGGGAT-GGCACACATCTG--CCCATGAGGACAATGGAGATGACCCAGTGCTCCATG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     280064 117 -   1829203 GCACCTTCATCTCAGCCAGAAGCGGCACCACCAGGAGGAAGG------AGGCAGTGAGTGGTGCCA--GCTGGGGAT-GGCACACATCTG--CCCATGAGGACAATGGAGATGACCCAGTGCTCCATG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30479728 117 + 171630274 GCACCTTCACCTCAGCCAGAAGGGGCACCACCAGGAGGAAGG------AGGCAGTGAGTGTTATCG--GCTGGGGAT-GGCACACATCTG--CCCATGAGGACAATGGAGATGACCCATTGCTCCATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           285742 117 +    515838 GCACCTTCACCTCAGCCAGAAGGGGCACCACCAGGAGGAAGG------AGGCAGTGAGTGTTATCG--GCTGGGGAT-GACACACATCTG--CCCATGAGGACAATGGAGATGCCCCAGTGCTCCACG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     914929 117 -   1771730 GCACCTTTACCTCAGACAGAAGTGGCACCACCAGGAGGAAGG------AGGCAGTGAGTGTTATCG--GCTAGGGAT-GGCACACATCTG--CCCATAAGGACAATGGAGATGTCCCAGTGCTCCATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      95967 117 -    486031 GCACCTTTACCTCAGCCAGAAGGGGCACCACCAGGAGGAAGG------AGGCAGTGAGTGTTATCG--GCTGGGGAT-GGCACACATCTG--TCCATGAGGACAATGGAGATGCCCCAGTGCTCCATG
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               372335 116 + 123392446 GCACCTTCGTCTCAGCCAGAAGCGGCACCAGCAGGGGGAGGG------AGGCAGCGAGCAGGGCCA--GGTGGGGAT-GGCACGCACCTG--CTCATAAGAACAAT-AAGATGGCCCAGTGTCCCACA
i micMur3.chr6             I 4591 C 0
s proCoq1.NW_012149775v1     190296 115 -   1411461 GCACCTTCGTCTCAGCCGGAAGTGGCAGCAGCAGGGTGAGGG------AGGCAGTGAGTGGAGCTG--GGT-GGGAT-GGCACAC-TCTG--CTCATAAGAACAATAAAGATGGCCCAGTGTCCCACG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           330910 113 +  18854210 GCACCTTCATCTCA----GAAATGGCACCACCAGGTTGAGGG------AGGGAGGGAGTGGGCCAG--AGGAGGGAT-AGCACACATCTG--CTCATAAGGGCAATAAAGATATCCCACTGTTCCATG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            45198 122 +     53444 TCACCTTCGCCTCA----GAAGTGATCCCACCTGGAGGAGGGGCTGTAGGGTGCCAAGTGGCAGCACCCCTGGAGAT-GACGGGGCTCTGTTCTCCTGAGGATGATGGAGGTGACCCAGTGCTCCAG-
i dasNov3.JH567297         C 0 C 0
e mm10.chr17               58107658 1863 -  94987271 I
e canFam3.chr35            26349471 502 +  26524999 I

a score=449721.000000
s hg38.chr6_GL000254v2_alt  1497273 32 +   4827813 AGTCACAGGTCATCCAGCCAGTTCTCtgctgt
s panTro5.chr6             30366708 32 + 175400573 AGTCACAGGTCATCCAGCCAGTTCTCtgctgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30601038 32 + 173848474 AGTCACAGGTCATCCAGCCAGTTCTCtgctgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     308150 32 +   2037526 AGTCACAGGTCATCCAGCCAGTTCTCtgctgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74974599 32 + 122973662 GGTCACAGGTCATCCAGCCAGTTCTCtgctgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30852806 32 + 172585720 GGTCACAGGTCATCCAGCCAGTTCTCtgctgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30142289 32 - 170955103 GGTCACAGGTCATCCAGCCAGTTCTCtgctgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     391509 32 +   1495729 GGTCACAGGTCATCCAGCCAGTTCTCtgctgt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     493213 32 -    863181 GGTCACAGGTCATCCAGCCAGTTCTCtgctgt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29641818 32 -  71996105 GGTCACAGGTCATCCAACCAGTTCTCtgctgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     374646 32 -    735854 GGTCACAGGTCATCCAGTCAGTTCTCtgctgt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     280181 32 -   1829203 GGTCACAGGTCATCCAGCCAGTTCTCtgctgt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30479845 32 + 171630274 GGTCACAGGTCATCCAGCCAGTTCTCtgctgt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           285859 32 +    515838 GGTCACAGGTCATCCAGCCAGTTCTCtgctgt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     915046 32 -   1771730 GGTCATAGGTCATCCAGCCAGTTCTCtaccgt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      96084 32 -    486031 GGTCACAGGTCATCCAGCCAGTTCTCtgctgt
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               372451 31 + 123392446 -GTCACAGGTCACCCAGCCAGTTCTCtgctgt
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     190411 30 -   1411461 -GTCCCAGGTCACCCA-CCAGTTCTCtgctgt
i proCoq1.NW_012149775v1   C 0 I 399
s otoGar3.GL873550           331023 30 +  18854210 -GTCATAGGGCACCAG-TGAGTTCTCtgatgc
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58107658 1863 -  94987271 I
e dasNov3.JH567297            45320  0 +     53444 C
e canFam3.chr35            26349471 502 +  26524999 I

a score=233887.000000
s hg38.chr6_GL000254v2_alt  1497305 19 +   4827813 ttcctcttcttaagatgct
s panTro5.chr6             30366740 19 + 175400573 tccctcttcttaagatgct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30601070 19 + 173848474 ttcctcttcttaagatgct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     308182 19 +   2037526 ttcctcttcttaagacgct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74974631 19 + 122973662 ttcctcttcttaagatgct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30852838 19 + 172585720 ttcctcttcttaagatact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30142321 19 - 170955103 ttcctcttcttaagatact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     391541 19 +   1495729 ttcctcttcttaagatact
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     493245 19 -    863181 ttcctcttcttaagatact
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29641850 19 -  71996105 ttcctcttcttaagatact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     374678 19 -    735854 ttcctcttcttaagatact
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     280213 19 -   1829203 ttcctcttcttaagatact
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30479877 19 + 171630274 ttcctcttcttaagatgct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           285891 19 +    515838 ttcctcttcttaagatgct
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     915078 19 -   1771730 ttcctcttcttaacatgct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      96116 19 -    486031 ttcctcttcttaagatgct
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               372482 19 + 123392446 cccctcttcctaagatgct
i micMur3.chr6             C 0 I 540
s otoGar3.GL873550           331053 18 +  18854210 tccctcttcctaagatgg-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58107658 1863 -  94987271 I
e dasNov3.JH567297            45320  0 +     53444 C
e proCoq1.NW_012149775v1     190441 399 -   1411461 I
e canFam3.chr35            26349471 502 +  26524999 I

a score=389684.000000
s hg38.chr6_GL000254v2_alt  1497324 41 +   4827813 tcttcccctcttttccctattgactatagg----catcctttaga-
s panTro5.chr6             30366759 41 + 175400573 tcttcccctcttttccctattgaccgtagg----catcctttaga-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30601089 41 + 173848474 tcttcccctcttttccctattgaccgtagg----catcctttaga-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     308201 41 +   2037526 tcttcccctcttttccctatggaccatagg----catcctttaga-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74974650 40 + 122973662 tcttcccctctttttcttat-gaccatagg----catcctttaga-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30852857 40 + 172585720 tcttcccctc-tttccctattgaccacaga----catcctttaga-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30142340 40 - 170955103 tcttcccctc-tttccctattgaccacaga----catcctttaga-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     391560 40 +   1495729 tcttcccctc-tttccctattgaccacaga----catcctttaga-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     493264 40 -    863181 ttttcccctc-tttccctattgaccacaga----catcctttaga-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29641869 40 -  71996105 tcttcccctc-tttccctattgaccacaga----catcctttaga-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     374697 40 -    735854 tcttcccctc-tttccctattgaccacaga----catcctttaga-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     280232 40 -   1829203 tcttcccctc-tttccctattgaccacaga----catcctttaga-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30479896 41 + 171630274 tcttcccctcttttccttattgaccatagg----catcctttaga-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           285910 41 +    515838 tcttctcctcttttccttattgaccatagg----catcctttaga-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     915097 41 -   1771730 tcttcccttcttttccttattgaccatagg----catcctttaga-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      96135 41 -    486031 tcttcccctcttttccttattgaccatagg----catcctttaga-
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           331071 37 +  18854210 ---------ccttccctcatttaccatacatgtttgtcctttagac
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               372501 540 + 123392446 I
e mm10.chr17               58107658 1863 -  94987271 I
e dasNov3.JH567297            45320  0 +     53444 C
e proCoq1.NW_012149775v1     190441 399 -   1411461 I
e canFam3.chr35            26349471 502 +  26524999 I

a score=184807.000000
s hg38.chr6_GL000254v2_alt  1497365 16 +   4827813 ctacccttttcagaaa
s panTro5.chr6             30366800 16 + 175400573 ccacccttttcagaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30601130 16 + 173848474 ccacccttttcagaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     308242 16 +   2037526 ccgtccttttcagaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74974690 16 + 122973662 ccatccttttcagaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30852897 16 + 172585720 ccacccttttcagaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30142380 16 - 170955103 ccacccttttcagaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     391600 16 +   1495729 ccacccttttcagaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     493304 16 -    863181 ccacccttttcagaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29641909 16 -  71996105 ccacccttttcagaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     374737 16 -    735854 ccacccttttcagaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     280272 16 -   1829203 ccacccttttcagaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30479937 16 + 171630274 ctacccctttcagaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           285951 16 +    515838 ccacccctttcagaaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     915138 16 -   1771730 ccacccctttcagaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      96176 16 -    486031 ccacccctttcagaaa
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           331108 16 +  18854210 ccatcccctccagcga
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26349973 16 +  26524999 CTCTCTTACTCAGAAC
i canFam3.chr35            I 502 C 0
e micMur3.chr6               372501 540 + 123392446 I
e mm10.chr17               58107658 1863 -  94987271 I
e dasNov3.JH567297            45320  0 +     53444 C
e proCoq1.NW_012149775v1     190441 399 -   1411461 I

a score=2286936.000000
s hg38.chr6_GL000254v2_alt  1497381 232 +   4827813 gccatcc--cccactcatc--ctctccttccaggctgggctatgcc-ccttcccctgaactcccataatgctggggttggacttcc--cgtaacacccaccacactgtgctataatttcctctttatg--tttctct-gtcttcccaagag----------------------------------------------ctctttcagatatagagcaggtttttttt------------------------ttctctacattttcaagtcaccagtggccaccacactgcttggttcatagttaacacaaact
s panTro5.chr6             30366816 231 + 175400573 gccatcc--cccactcacc--ctctccttccaggctgggctatgcc-ccttcccctgaactcccataatgctggggttggacttcc--cgtaacacccaccacactgtgctgtaatttcctctttatg--tttctct-gtcttcttaagag----------------------------------------------ctctttcagatatagagcagg-gtttttt------------------------ttctctatattttcaagtcaccagtggccaccacactgcttggttcatagttaacacaaact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30601146 232 + 173848474 gccatcc--cccactcacc--ctctccttccaggctgggctatgcc-ccttcccctgaactcccataatgctggggttggacttcc--cgtaacacccaccacactgtgctgtaatttcctctttatg--tttctctggtcttcttaagag----------------------------------------------ctctttcagatatagagcagg-ttttttt------------------------ttctctatattttcaagtcaccagtggccaccacactgcttggttcatagttaacacaaact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     308258 229 +   2037526 gccatcc--cccactcacc--cg-tccttccaggctgggctatgcc-ccttcccctgaactcccataatgctggggttggacttcc--cgtaacacccaccacactgtgctgtaatttcctctttatg--tttctct-gtcttcccaagag----------------------------------------------ctctttcagatatagagcagg--tttttt------------------------ttctctatattttcaagtcaccagtggccaccacactgcttggttcatagttaacacaaact
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74974706 231 + 122973662 gccatcc--cccactcacc--ctctccttccaggctgggccatgca-ccttcccctgaactcccataatgctggggttggacctcc--catagcacccaccacactgtgctgtaatttcctctttatg--tttctct-gtcttcccaagag----------------------------------------------ctctttcagatatagaatagg-tcttttt------------------------ttctctatattttcaaaacaccagtggccaccacattgcttggttcatagttaacacaaaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30852913 234 + 172585720 gccatcc--cccactcacc--ctctccctccaggttgggctacacc-ccttcccctgagctcccataatgctgtggttggacctcc--catagcacccaccatactgtgctgtaatttcctctttatg--tttctct-gtcttccCAAGAG----------------------------------------------CTCTTTCAGATACATAACAGG---TTTTTAAA-------------------ATATATATATATTTTCAAATCACCAGTAGCTACCACATTGCTTGGTTCATAGTTAACACAAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30142396 233 - 170955103 gccatcc--cccactcacc--ctctccctccaggttgggctacacc-ccttcccctgagctcccataatgctgtggttggacctcc--catagcacccaccatactgtgctgtaatttcctctttatg--tttctct-gtcttccCAAGAG----------------------------------------------CTCTTTCAGATACATAACAGG---TTTTT-AA-------------------ATATATATATATTTTCAAATCACCAGTAGCTACCACATTGCTTGGTTCATAGTTAACACAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     391616 232 +   1495729 gccatcc--cccactcacc--ctctccctccaggttgggctacacc-ccttcccctgagctcccataatgctgtggttggacctcc--catagcacccaccatactgtgctgtaatttcctctttatg--tttctct-gtcttcccaagag----------------------------------------------ctctttcagatacataacagg----tttt-aa-------------------aaatatatatattttcaaatcaccagtagctaccacattgcttggttcatagttaacacaaaat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     493320 232 -    863181 gccatcc--cccactcacc--ctctccctccaggttgggctacacc-ccttcccctgagctcccataatgctgtggttggacctcc--catagcacccaccatactgtgctgtaatttcctctttatg--tttctct-gtcttcccaagag----------------------------------------------ctctttcaggTACATAACAGG---TTTTT-AA-------------------A-ATATATATATTTTCAAATCACCAGTAGCTACCATATTGCTTGGTTCATAGTTAACACAAAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29641925 232 -  71996105 gccatcc--cccactcacc--ctctccctccaggttgggctacacc-ccttcccctgagctcccataatgctgtggttggacctcc--catagcacccaccatactgtgctgtaatttcctctttatg--tttctct-gtcttccCAAGAG----------------------------------------------CTCTTTCAGATACATAACAGG---TTTTT-AA-------------------A-ATATATACATTTTCAAATCACCAGTGGCTACCACATTGCTTGGTTCATAGTTAACACAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     374753 232 -    735854 gccatcc--cccactcacc--ctctccctccaggttgggctacacc-tcttcccctgagctcccataatgctgtggttggacctcc--catagcacccaccatactgtgctgtaatttcctctttatg--tttctct-gtcttcccaagag----------------------------------------------ctctttcagatacataacagg---ttttt-aa-------------------a-atatatatattttcaaatcaccagtagctaccatattgcttggttcatagttaacacaaaat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     280288 232 -   1829203 gccatcc--cccactcacc--ctctccctccaggttgggctacgcc-ccttcccctgagctcccataatgctgtggttggacctcc--catagcacccaccacactgtgctgtaatttcctctttatg--tttctct-gtcttccCAAGAG----------------------------------------------CTCTTTCAGATACATAACAGG---TTTTT-TA-------------------A-ATATATATATTTTCAAATCACCAGTGGCTACCACATTGCTTGGTTCATAGTTAACACAAAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30479953 232 + 171630274 gcaatcc--cccactcacc--ctctccctctaggctgagctatgcc-ccttcctctgagcttccatgatgctgaggttggacctcc--catagcactcaccacactgtgctgtaatttcctctttatg--tttctct-gccttcccaagag----------------------------------------------ctctttcagatatagaaaagg---ttttg-tg-------------------t-ttatatatattttcaaatcaccagtggctaccacactgcttggttcatggttaacacaaaat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           285967 241 +    515838 gcaatcc--cccactcact--ctctccctccaggctgagctacacc-ccttcctctgagcttccacgatgctggggttggagctcc--catagcacccgccacactgtgctgtaatttcctctttatg--tttctct-gtcttcccaagag----------------------------------------------ctctttcagatacagaacagg---ttttg-tgttgcttc----------ttt-ttctatatattttcaaatcatcagtggctaccacactgcttggttcatgcttaacacaaaat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     915154 248 -   1771730 gtaatcc--cccactcacc--ctctccctccaggctgagctatgcc-ccttcctctgagcttccatgatgctgggattggacctcc--catagcactcaccacactgtgctgtaatttcctctttatg--tttctcc-gtcttcccaagag----------------------------------------------ctctttcagaaacagaacagg---ttttg-tggggtttttatatatatatat-atatatatatTTTCAAATCACCA---GCTACCACACTGCTTGGTTCATGGTTAACACAAAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      96192 250 -    486031 gcaatcc--cccactcacc--ctctccctccaggctgagctatgcc-gcttcctctgagcttccatgatgctggggttggacctcc--catagcacccgccacactgtgctgtaatttcctctttatg--tttctct-gtcttccCAAGAG----------------------------------------------CTTTTTCAGATACAGAACAGG---TCTTG-TG-TGTGTGTGTGTTTTTTTTA-ATATACATATTTTCAAATCACCAGTGGCTACCACACTGCTTGGTTCATGGTTAACACAAAAT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           331124 225 +  18854210 gccatta--ccgactcatc--ctctcactccaggctggactatgcctcccttctctgagc-accacagggccaaggtcagacccctgacacagcatccaccacactgtgctgtaacttcctctgtatg--tctcatc--tcttcccaggag----------------------------------------------tgccatcagatacagaacagg---cattt------------------------ttctttttattttcacatcaccagtgcctacca-----cttggctcataggtagcacacaat
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26349989 204 +  26524999 AACACCCCTCCCACCCCCCTACCCCCCCACCCTGCCATACTGGGCC-CCTCCTGCTGAGCTCCC-TGACCCCAGGGC--AACCTCTG-CCCAGCACCTGTTATGC------------CCCTGTCCGTGACTCCCTCT-GGACACCCA-----------------------------------------------------------ACACCCAACACA---TTTCC---------------------------TTTCCGTTTTCACACCACCAGGAGCTCCCATCCtgcttggctcatggtc-gcacacaat
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            45320 198 +     53444 ---------------------------------------------------------------------------GTCAG--CCCC--TACCACACCCAGCACGCTGTGCTCTAATGTCTTTCTTATT-------CT-GTGTCTCCAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGAGGTAGGGCAGG---TTCTA------------------------CTCTTTGCCTTTGCACATCCCTGGTGGCCGCCATTCTGCTCGGTGCATGGTGGGCACACAGG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               372501 540 + 123392446 I
e mm10.chr17               58107658 1863 -  94987271 I
e proCoq1.NW_012149775v1     190441 399 -   1411461 I

a score=1314485.000000
s hg38.chr6_GL000254v2_alt  1497613 114 +   4827813 aaatggttctagagaatgTGATTACATGAACT--CTAACATTATTGgaagaaaacaagatgaaa----agaggtgagatgccttgtttaaagtcatacaa----ctgg----ttgac---aggctggttca
s panTro5.chr6             30367047 114 + 175400573 aaatggttctagagaatgTGATTACATGAACT--CTAACACTATTGgaagaaaacaagatgaaa----agaggtgagatgccttgtttaaagtcatacaa----ctgg----ttgcc---aggctggttca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30601378 114 + 173848474 aaatggttctagagaatgTGATTACATGAACT--CTAACACTATTGgaagaaaacaagatgaaa----agaggtgagatgccttgtttaaagtcatacaa----ctgg----ttgcc---aggctggttca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     308487 114 +   2037526 aaatggttctagagaatgTGATTACATGAACT--CTAACATTATTGgaagaaaacaagatgaaa----agaggtgagatgccttgtttaaagtcatacaa----ctgg----ttgcc---aggctggttca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74974937 114 + 122973662 aaatggttctagagaatgTGATTACATGAACT--CTAACATTATTGgaagaaaacaagatgaaa----agaggtgagatgtcttgtttaaagtcatacaa----ctgg----ttgca---aggctggttca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30853147 114 + 172585720 AAATGGTTCTAGAGAATGTGATTACATGAACT--CTAACATTATTGgaagaaaacaagatgaaa----agaggtgagatatcttgtttaaagtcatacaa----ctgg----ttata---aggcttcttca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30142629 114 - 170955103 AAATGGTTCTAGAGAATGTGATTACATGAACT--CTAACATTATTGgaagaaaacaagatgaaa----agaggtgagatatcttgtttaaagtcatacaa----ctgg----ttata---aggcttcttca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     391848 114 +   1495729 aaatggttctagagaatgTGATTACATGAACT--CTAACATTATTGgaagaaaacaagatgaaa----agaggtgagatatcttgtttaaagtcatacaa----ctgg----ttata---aggcttcttca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     493552 114 -    863181 AAATGGTTCTAGAGAATGTGATTACATGAACT--CTAACATTATTGgaagaaaacaagatgaaa----agaggtgagatatcttgtttaaagtcatacaa----ctgg----ttaca---aggcttcttca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29642157 114 -  71996105 AAATGGTTCTAGAGAATGTGATTACATGAACT--CTAACATTATTGgaagaaaacaagatgaaa----agaggtgagatatcttgtttaaagtcatacaa----ctgg----ttaca---aggctccttca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     374985 114 -    735854 aaatggttctagagaatgTGATTACATGAACT--CTAACATTATTGgaagaaaacaagatgaaa----agaggtgagatatcttgtttaaagtcatacaa----ctgg----ttaca---aggcttcttca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     280520 114 -   1829203 AAATGGTTCTAGAGAATGTGATTACATCAACT--CTAACATTATTGgaagaaaacaagatgaaa----agaggtgagatgtcttatttaaagtcatacaa----ctgg----ttaca---aggcttcttca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30480185 112 + 171630274 aaatgtttctagagaatgTGATTACATGAACC--CTAATATCATTGGAAGAAAGCATGATGAaa----agagat--gatatcttgcttaaagtcatacaa----ctgg----ttaca---aggctggttta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           286208 112 +    515838 aaatgtttctagagaatgTGATTACATGAACC--CTAATATCATTGgaagaaaacaagatgaaa----agaagt--gatgtcttgcttaaagtcaaacaa----ctgg----ttaca---aggctggttta
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     915402 112 -   1771730 AAATGTTTCTAGGGAATGTGATTACATGAACC--CTAATATCATTAgaagaaaacaaggtgaaa----agaagt--gatgtcttgcttaaagtcagacaa----ctgg----ttaca---aggctggttta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      96442 112 -    486031 AAATGTTTCTAGAGAATGTGATTACATGAACC--CTAATATCATTGgaagaaaacaagatgaaa----agaagt--gacgtcttgcttaaagtcagacaa----ctgg----ttaca---aggctgtttta
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           331349 121 +  18854210 aaatgtttcttgaGGATGTGAGTATATGAACC--C-AATAATTTTTGAAGAAAagatgaagggaggtgggaggtgagattcctcacttaaggtcatacaattgcttgg----ttaca---aggctgattct
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58109521 113 -  94987271 AAGTGTTTCTTGAAGATATG---AAAAAAACTAGCTAATATCTTTGGAAGAAAACAAAATGA------agaggc--aaagttttgtttgaaatcacacag----ctggttgattaca---gggcttcacct
i mm10.chr17               I 1863 C 0
s canFam3.chr35            26350193 111 +  26524999 aaatgtttcttgaaGGTACAAGTGAGTGAact--ctcatttttctggaagaagacataatgaag----ataggt-----gccttgcctaaggtcacacag----ttgg----tgggccataggctggccc-
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            45518 101 +     53444 AAATGCTTCTTGAGGGTGTGAGGA-ATTAATC--CCAGGACTCTGGGAAGAAACCAAGATGAGC----AGCGG---GGGACCTTGTGTAGATCACAGCCC----ATGG----TGACA---GG---------
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               372501 540 + 123392446 I
e proCoq1.NW_012149775v1     190441 399 -   1411461 I

a score=1347277.000000
s hg38.chr6_GL000254v2_alt  1497727 104 +   4827813 agaacccaggtcttctgacttcaaatccagtgctctttc---tatgcag----ctacttctgtgccaAGCACGGATGGTGGTGAGCAGAACTGGCAGCAGCCTGAG-TCCCC
s panTro5.chr6             30367161 104 + 175400573 agaacccagatcttctgacttcaaatccagtgctctttc---tatgcag----ctacttctgtgccaAGCAAGGATGGTGGTGAGCAGAACTGGCAGCAGCTTGAG-TCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30601492 104 + 173848474 agaacccaggtcttctgacttcaaatccagtgctctttc---tatgcag----ctacttctgtgccaAGCAAGGATGGTGGTGAGCAGAACTGGCAGCAGCTTGAG-TCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     308601 104 +   2037526 agaacccaggtcttctgacttcaaatccagtgctctttc---tatgcag----ctacttctgtgccaAGCAAGGATGGTGGTGAGCAGAACTGGCAGCAGCCTGAG-TCCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74975051 104 + 122973662 agaacccagggcttctgacttcaaatccagtgctctttc---tatgcag----ctacttctgtgccaAGCAAGGATGGTGGTGAGCAGAGCTGGCAGCAGCCTGAG-TCCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30853261 104 + 172585720 agaacccaggtcttctgacttcaaatccagtgctctgtc---tattcag----ctactTCTGTGCCTAGCAAGGATGGTGGTGAGGAGAGCTGGAAGCAGCCTGAG-TACCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30142743 104 - 170955103 agaacccaggtcttctgacttcaaatccagtgctctgtc---tatgcag----ctactTCTGTGCCTAGCAAGGATGGTGGTGAGGAGAGCTGGAAGCAGCCTGAG-TACCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     391962 104 +   1495729 agaacccaggtcttctgacttcaaatccagtgctctgtc---tatgcag----ctacttctgTGCCTAGCAAGGATGGTGGTGAGGAGAGCTGGAAGCAGCCTGAG-TACCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     493666 104 -    863181 agaacccaggtcttctgacttcaaatccagtgctctgtc---tatgcag----ctactTCTGTGCCTAGCAAGGATGGTGGTGAGGAGAGCTGGAAGCAGCCTGAG-TACCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29642271 104 -  71996105 agaacccaggtcttctgacttcaaatccagtgctctgtc---tatgcag----ctactTCTGTGCCTAGCAAGGAGAGTGGTGAGGAGAGCTGGCAGCAGCCTGAG-TACCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     375099 104 -    735854 agaacccaggtcttctgacttcaaatccagtgctctgtc---tatgcag----ctacttctgTGCCTAGCAAGGATGGTGGTGAGAAGAGCTGGAAGCAGCCTGAG-TACCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     280634 104 -   1829203 agaacccaggtcttctgacttcaaatccagtgctctgtc---tatgcag----ctactttTGTGCCTAGCAAGGATGGTGCTGAGGAGAGCTGGCAGCAGCCTGAG-TACCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30480297 104 + 171630274 agaacccaggtcttctgactccaaatccagtgctctttc---tatgcag----ctactTGTGTGTTTGGCAACGATGGTGGTGAGGAGAGCTGGCAGCAGCCTGAG-TCCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           286320 104 +    515838 agaacccaggtcttctgactctaaatccagtgctctttc---tatgcag----ctactTCTGTGCCTGGCAACGATGGTGGTGAGGAGAGCCGGCAGCAGCCTGAG-TCCCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     915514 104 -   1771730 agaacccaggtcttctgactccgaatccagggctctttc---tatgcag----ctactTCTGTGCCTGGCAACGATGGTGATGAGGAGAGCTGGCAGCAGTCTGAG-TCCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      96554 104 -    486031 agaacccaggtcttctgactccaaatccagtgctctttc---tatgcag----ctactTCCGTGCCTGGCAACAATGGTGATGAGGAGAGCTGGCAGCAGCCTGAG-TCCCC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     190840 108 -   1411461 agaacccaggtcttctagctctaaatccagtgctctgtcctgtgcacag----ctactTCTGTGCTCGGTGGGGATGGTGGTGAGGAGAGCAGGCAGCGGCCCCGAGTCCCC
i proCoq1.NW_012149775v1   I 399 C 0
s otoGar3.GL873550           331470 111 +  18854210 agaactcaggtcttctgactccaaatccaatgctctctcctgaacacagctacCTACTTCTGTGCTTGGTGGGGATGTCAGTGAGAGGAGCTGGAAGCAGCCTGGA-TCCCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58109634 100 -  94987271 ggaatccaggtctcgaggcttaaaatcca--gcactgtt---tgtacat----ctatgtctgTGCCCATTGATGCCAATGGTGAGAACAGCCAGC-GCAGCCAAGG-T-CCC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26350304  87 +  26524999 -------------tctggctcctaacccaggACGCTCAT---CTAGTGG----CTGCTCCTGCTCC-ACTGGGGATGGTGGTGAGGAT-GCTGGCAG--GCCCGCA-TCCCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            45619  88 +     53444 -----CCAGGTCT--------CTACCTCGTTCCTCTTGC---TGAGAAG----CAACTTCTGTAGCT--CCTGGAAGGCAGTGAGGGG-GCCAGGAGCAGGCCGAG-GTCCT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               372501 540 + 123392446 I

a score=978162.000000
s hg38.chr6_GL000254v2_alt  1497831 79 +   4827813 AGGTACCCTGGCCATCCACTGGGCATTGGGGAAAGGACTTGATC----AGT----AGATTGAGAGTCCT-CTCTTCTATCCCTTACCA
s panTro5.chr6             30367265 79 + 175400573 AGGTACCCTGGCCATCCACTGGGCATTGGGGAAAGGACTTGATC----AGT----AGATTGAGTGTCCT-CTCCTCTATCCCTTACCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30601596 79 + 173848474 AGGTACCCTGGCCATCCACTGGGCATTGGGGAAAGGACTTGATC----AGT----AGATTGAGTGTCCT-CTCCTCTATCCCTTACCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     308705 79 +   2037526 AGGTACCCTGGCCATCCACTGGGCATTGGGGAAAGGACTTGATC----AGT----AGATTGAGTGTCCT-CTCCTCTATCCCTTACCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74975155 79 + 122973662 AGGTACCCTGGCCTTCCACTGGGCATTGGGGAAAGGACTTGATC----AGT----AGATTGAGTGTCCT-CTCCTCTATCCCTTACCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30853365 79 + 172585720 AGGTACCCTGGCCATCCACTGGGCATTGAAGAAAGGGCTTGATC----AGT----AGATTGAGTGTCCT-CTCCTCTATCCCTTACCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30142847 79 - 170955103 AGGTACCCTGGCCATCCACTGGGCATTGAAGAAAGGGCTTGATC----AGT----AGATTGAGTGTCCT-CTCCTCTATCCCTTACCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     392066 79 +   1495729 AGGTACCCTGGCCATCCACTGGGCATTGAAGAAAGGGCTTGATC----AGT----AGATTGAGTGTCCT-CTCCTCTATCCCTTACCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     493770 79 -    863181 AGGTACCCTGGCCACCCACTGGGCATTGAAGAAAGGGCTTGATC----AGT----AGATTGAGTGTCCT-CTCCTCTATCCCTTACCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29642375 79 -  71996105 AGGTACCCTGGCCATCCACTGGGCGTTGAAGAAAGGGCTTGATC----AGT----AGATTGAGTGTCCT-CTCCTCTATCCCTTACCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     375203 79 -    735854 AGGTACCCTGGCCACCCACTGGGCATTGAAGAAAGGGCTTGATC----AGT----AGATTGAGTGTCCT-CTCCTCTATCCCTTACCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     280738 79 -   1829203 AGGTACCCTGGCCATTCACTGGGCATTGAAGAAAGGGCTTGATC----AGT----AGATTGAGTGTCCT-CTCCTATATCCCTTACCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30480401 79 + 171630274 AGGTACCCTGGCCATCCACTGGGCATTGGGGAAATGTCTTGATC----AGT----AGATTGAGTGCCCT-CTCCTCTGTCCCTTACCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           286424 79 +    515838 AGGTACCCTGGCCATCCACTGGGCATTGGGGAAAGGTCTTAATC----AGT----AGATTGAGTGTCCT-CTGCTCTGTCCCTTACCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     915618 79 -   1771730 AGGTACCCTGGCCATCCACTGGGCATTGGGGAAAGGTCTTGATC----AGT----AGATTGAGTGTCCT-CTCCTCTGTCCCTTACCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      96658 79 -    486031 AGGTACCCTGGCCATCCACTGGGCATTGGGGAAAGGTCTTGATC----AGT----AGATTGAGTGTCCT-CTCCTCTGTCCCTTACCA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     190948 78 -   1411461 AGGTGC-CCGGCCATCCACTGGGGACTGGGGAAAGGGTTTGATC----AGC----AGACTGAGGGTCAA-GCCCCTTGACCCTCACCA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           331581 76 +  18854210 AGGTACGCTGGCCATTCATTGGTCACAGGGCAAGGGGCTTGATCAGCAAGC----AGATTCAGGGTCAA---CCCTTGACCCT-----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58109734 82 -  94987271 AGATACCCGAG-TATCTGATGGGCACTGGGGAAAGG-CTTGAAC----AATGAAGAAACTAAAGGTCCTACCACTTTGTCCCTTACTG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26350391 58 +  26524999 GGAC-CCCCAGCCGTGCCCTGG--------------------TG----GGC----AGACCAGGGATCAC-CCCAGCTGGTCCTTGTCA
i canFam3.chr35            C 0 I 17
e micMur3.chr6               372501 540 + 123392446 I
e dasNov3.JH567297            45707  0 +     53444 C

a score=20460.000000
s hg38.chr6_GL000254v2_alt  1497910 3 +   4827813 CCC
s panTro5.chr6             30367344 3 + 175400573 CCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30601675 3 + 173848474 CCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     308784 3 +   2037526 CCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74975234 3 + 122973662 CCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30853444 3 + 172585720 ACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30142926 3 - 170955103 ACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     392145 3 +   1495729 ACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     493849 3 -    863181 ACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29642454 3 -  71996105 ACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     375282 3 -    735854 ACC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     280817 3 -   1829203 ACC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30480480 3 + 171630274 ACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           286503 3 +    515838 ACC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     915697 3 -   1771730 ACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      96737 3 -    486031 ACC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     191026 3 -   1411461 ACG
i proCoq1.NW_012149775v1   C 0 C 0
s mm10.chr17               58109816 3 -  94987271 ACA
i mm10.chr17               C 0 C 0
e micMur3.chr6               372501 540 + 123392446 I
e dasNov3.JH567297            45707 0 +     53444 C
e canFam3.chr35            26350449 17 +  26524999 I
e otoGar3.GL873550           331657 0 +  18854210 C

a score=361504.000000
s hg38.chr6_GL000254v2_alt  1497913 27 +   4827813 GGCCCCATCC----CATCTTCTAAAGCAGTC
s panTro5.chr6             30367347 27 + 175400573 GGCCCCATCC----CATCTTCTAAAGCAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30601678 27 + 173848474 GGCCCCATCC----CATCTTCTAAAGCAGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     308787 27 +   2037526 GGCCCCATCC----CATCTTCTAAAGCAGTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74975237 27 + 122973662 GGCCCCATCC----CATCTTCTAAAGCAGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30853447 27 + 172585720 AGCCCCATCC----CATCTTCTAAAGCAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30142929 27 - 170955103 GGCCCCATCC----CATCTTCTAAAGCAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     392148 27 +   1495729 GGCCCCATCC----CATCTTCTAAAGCAGTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     493852 27 -    863181 GGCCCCATCC----CATCTTCTAAAGTAGTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29642457 27 -  71996105 AGCCCCATCC----TATCTTCTAAAGCAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     375285 27 -    735854 AGCCCCATCC----CATCTTCTAAAGTAGTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     280820 27 -   1829203 AGCCCCATCC----CATCTTCTAAAGCAGTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30480483 26 + 171630274 GGCCCCAT-C----CATCTTCTAAAACAGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           286506 27 +    515838 GGCCCCATCC----CATCTTCTAAAGCAGTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     915700 27 -   1771730 GGCCCCATCC----CATCTTCTAAAGCAGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      96740 27 -    486031 GGCCCTATCC----CATCTTCTAAAGCAGTA
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               373041 27 + 123392446 GGCTCCATCC----CATCGTCTAAAGCCGTC
i micMur3.chr6             I 540 C 0
s proCoq1.NW_012149775v1     191029 27 -   1411461 GGCTCCATCC----CGTCGTCTAAGGCAGTC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           331657 27 +  18854210 GGCTCCAAAT----CATTGTCTAAAATAGTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58109819 26 -  94987271 -----CATGCCAAACAATGTCTAAAAAATTC
i mm10.chr17               C 0 C 0
e dasNov3.JH567297            45707  0 +     53444 C
e canFam3.chr35            26350449 17 +  26524999 I

a score=10775210.000000
s hg38.chr6_GL000254v2_alt  1497940 646 +   4827813 ATTTCTATTCCAAGTCATCCAGGTGATTCAGCCAGGGATCAAGTCCACATGGTACTTGGGTTGATATGAGTCCTGTACTTAGAGGAGAGTAGGTAACTGCTCCTTCTCAGGAGCTCAGGGAGAAACTGGACCCTCGGCCCCAGAGCCCAAAGAAGGGAATGACCTTCCTAGTGAAGGAGGCAGTGAAGGTGTAGATGGGCTCTCGGGTGACAGCGTTGGTGAAGGTCACCCAGCCCACCTCATAGTCAAGAGACACCCTCACCTGCCGGGGCTGCTCCTTCAGGGTCAGCCGTGTGGGGAAGGAGCCCAGAGCCGAGACGAAGCCCCAAGCCAGCCTCACAGCCCACACCCCCTCCTCTGGCCGCAGCCGAAGCTCCCCCTTCCGCTGCACATCCTCGCTCACCACGCCCACGGTGCAGCTGCCCCCATGGGCCAGGTCTATACTCACCACCCACGTGTGTCTCCCCCCTGTGATGCCAGTGTGGGCCAGAACACAGGTGGCCCGGTCAAAACGCTGGGGGTTGTCTGGTGAGTTCTGCCATTTGTAGGAGAACTGAGCTCGCTGGTGGTCCTCGGACAAGAGGAGCTTGGGGTGGGAAGTCTGAGGGTCTAGAGAAATGTGAGCTGTGGGGATAACCAA---AAGGGA
s panTro5.chr6             30367374 646 + 175400573 ATTTCTATTCCAAGTCGTCCAGGTGATTCAGCCAGGGATCAAGTCCACATGGTACTTGGGTTGATATGAGTCCTGTACTTAGAGGAGAGTAGGTAACTGCTCCTTCTCAGGAGCTCAGGAAGAAACTGGACCCTCGGCCCCAGAGCCCAAAGAAGGGAATGACCTTCCTAGTGAAGGAGGCAGTGAAGGTGTAGATGGGCTCTCGGGTGACAGCGTTGGTGAAGGTCACCCAGCCCACCTCATAGTCAAGAGACACCCTCACCTGCCAGGGCTGCTCCTTCAGGGTCAGCCGTGTGGGGAAGGAGCCCAGAGCCGAGACGAAGCCCCAAGCCAGCCTCACAGCCCACACCCCCTCCTCTGGCCGCAGCCGAAGCTCCCCCTTCCGCTGCACATCCTCGCTCACCACACCCACGGTGCAGCTGCCCCCATGGGCCAGGTCTATACTCACCACCCACGTGTGTCTCCCCCCTGTGATGCCAGTGTGGGCCAGAACACAGGTGGCCCGGTCAAAACGCTGGGGGTTGTCTGGTGAGTTCTGCCATTTGTAGGAGAACTGAGCCCGCTGGTGGTCCTCGGACAAGAGGAGCTTGGGGTGGGAAGTCTGAGGGTCTAGAGAAATGTGAGCTGTGGGGATAACCAA---AAGGGA
i panTro5.chr6             C 0 I 3
s panPan2.chr6             30601705 646 + 173848474 TTTTCTATTCCAAGTCGTCCAGGTGATTCAGCCAGGGATCAAGTCCACATGGTACTTGGGTTGATATGAGTCCTGTACTTAGAGGAGAGTAGGTAACTGCTCCTTCTCAGGAGCTCAGGAAGAAACTGGACCCTCGGCCCCAGAGCCCAAAGAAGGGAATGACCTTCCTAGTGAAGGAGGCAGTGAAGGTGTAGATGGGCTCTCGGGTGACAGCGTTGGTGAAGGTCACCCAGCCCACCTCATAGTCAAGAGACACCCTCACCTGCCAGGGCTGCTCCTTCAGGGTCAGCCGTGTGGGGAAGGAGCCCAGAGCCGAGACGAAGCCCCAAGCCAGCCTCACAGCCCACACCCCCTCCTCTGGCCGCAGCCGAAGCTCCCCCTTCCGCTGCACATCCTCGCTCACCACACCCACGGTGCAGTTGCCCCCATGGGCCAGGTCTATACTCACCACCCACGTGTGTCTCCCCCCTGTGATGCCAGTGTGGGCCAGAACACAGGTGGCCCGGTCAAAACGCTGGGGGTTGTCTGGTGAGTTCTGCCATTTGTAGGAGAACTGAGCCCGCTGGTGGTCCTCGGACAAGAGGAGCTTGGGGTGGGAAGTCTGAGGGTCTAGAGAAATGTGAGCTGTGGGGATAACCAA---AAGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     308814 645 +   2037526 ATTTCTATTCCAAGTCGTCCAGGTGATTCAGCCAGGGATCAAGTCCACATGGTACTTGGGTTGATATGAGTCCTGTACTTAGAGGAGAATAGGTAACTGCTCCTTCTCAGGAGCTCAGGGAGAAACTGGACCCTCGGCCCCAGAGCCCAAAGAAGGGAATGACCTTCCTAGTGAAGGAGGCAGTGAAGGTGTAGATGGGCTCTCGGGTGACAGCGTTGGTGAAGGTCACCCAGCCCACCTCATAGTCAAGAGACACCCTCACCTGCCAGGGCTGCTCCTTCAGGGTCAGCCGTGTGGGGAAGGAGCCCAGAGCCGAGACGAAGCCCCAAGCCAGCCTCACAGCCCACACCCCCTCCTCTGGCCGCAGCCGAAGCTCCCCCTTCCGCTGCACATCCTCGCTCACCACGCCCATGGTGCAGCTGCCCCCATGGGCCAGGTCTATACTCACCACCCATGTGTGTCTCCCCCCTGTGATGCCAGTGTGGGCCAGAACACAGGTGGCCCGGTCAAAACGCTGGGGGTTGTCTGGTGAGTTCTGCCATTTGTAGGAGAACTGAGCTCGCTGGTGGTCCTCGGACAAGAGGAGCTT-GGGTGGGAAGTCTGAGGGTCTAGAGAAATGTGAGCTGTGGGGATAACCAA---AAGCGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74975264 646 + 122973662 ATTTCTATTCCAAGTCGTCCAGGTGATTCAGCCAGGGATCAAGTCCACATGGTACTTGGGTTGATTTGAGTCCTGTACTTAGAGGAGAGTAGGTAACTGCTCCTTCTCAGGAGCTCAGGGAGAAACTGGACCCTCGGCCCCAGAGCCCAAAGAAGGGAATGACCTTCCTAGTGAAGGAGGCAGTGAAGGTGTAGATGGGCTCTCGAGTGACAGCGTTGGTGAAGGTCACCCAGCCCACCTCATAGTCAAGAGACACCCGCACCTGCCGGGGCTGCTCCTTCAGGGTCAGCCGTGTGGGGAAGGAGCCCAGAGCCGAGACGAAGCCCCAGGCCAGCCTCACAGCCCAAACCCCCTCCTCTGGCCGCAGCCGAAGCTCCCCCTTCCGCTGCACATCCTCGCTTACCACGCCCACGGTGCAGCTGCCCCCATGGGCCAGGTCTATACTCACCACCCATGTGTATCTCCCCCCTGTGATGCCAGTGTGGGCCAGAACACAGGTGGCCCGGTCAAAACGCTGGGGATTGTCTGGTGAGTTCTGCCATTTGTAGGAGAACTGAGCCCGCTGGTGGTCCTCGGACAAGAGGAGCTTGGGGTGGGAAGTCTGAGGGTCTAGAGAAATGTGAGCTGTGGGGATAACCAA---AAGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30853474 646 + 172585720 ATTTCTATTCCAAGTCGTCCAGGTAACTCAGCCAGGGATCAAGTCCACGTGGTTCTTGGGTTGATTTGAGTCCTGTACTTAGAGGAGGGTAGGTAACTGCTCCTTCTCAGGAGCTCAGGGAGAAACTGGACCCTCGGCCCCAGAGCCCAAAGAAGGGAATGACCTTCCTAGTGAAGGAGGCAGTGAAGGTGTAGATGGGCTCTCGGGTGGCAGCATTGGTGAAGGTCACCCAGCCCACCTCATAGTCAAGAGACACCCGCACCTGCTGGGGCTGCTCCTTCAGGGTCAGCCGTGTGGGAAAGGAGCCCAGAGCCGAGACGAAGCCCCAGGCCAGCCTCACAGCCCACACGCCCTCCTCTGGCCGCAGTCGAAGCTCTCCCTTCCGCTGCACATCCTCGCTCACCACGCCCACGGTGCAACTGCCCCCGTGTGCCAGGTCTATACTGACCACCCACGTGTGTCTCCCCCCTGTGATGCCAGTGTGGGCCAGAACACAGGTGGCCCGGTCAAAACGCTGGGGATTGTCTGGAGAGTTCTGCCATTTGTAGGAGAACTGAGCCCGCTGGCGGTCCTCGGACAAGAGGAGCTTGGGGTGGGAAGTCTGAGGGTCTAGAGAAATGTGAGCTGTGGGGATAACCAA---AAGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30142956 646 - 170955103 ATTTCTATTCCAAGTCGTCCAGGTAACTCAGCCAGGGATCAAGTCCACGTGGTTCTTGGGTTGATTTGAGTCCTGTACTTAGAGGAGGGTAGGTAACTGCTCCTTCTCAGGAGCTCAGGGAGAAACTGGACCCTCGGCCCCAGAGCCCAAAGAAGGGAATGACCTTCCTAGTGAAGGAGGCAGTGAAGGTGTAGATGGGCTCTCGGGTGGCAGCATTGGTGAAGGTCACCCAGCCCACCTCATAGTCAAGAGACACCCGCACCTGCTGGGGCTGCTCCTTCAGGGTCAGCCGTGTGGGAAAGGAGCCCAGAGCCGAGACGAAGCCCCAGGCCAGCCTCACAGCCCACACGCCCTCCTCTGGCCGCAGTCGAAGCTCTCCCTTCCGCTGCACATCCTCGCTCACCACGCCCACGGTGCAACTGCCCCCGTGTGCCAGGTCTATACTGACCACCCACGTGTGTCTCCCCCCTGTGATGCCAGTGTGGGCCAGAACACAGGTGGCCCGGTCAAAACGCTGGGGATTGTCTGGAGAGTTCTGCCATTTGTAGGAGAACTGAGCCCGCTGGCGGTCCTCGGACAAGAGGAGCTTGGGGTGGGAAGTCTGAGGGTCTAGAGAAATGTGAGCTGTGGGGATAACCAA---AAGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     392175 646 +   1495729 ATTTCTATTCCAAGTCGTCCAGGTAACTCAGCCAGGGATCAAGTCCACGTGGTTCTTGGGTTGATTTGAGTCCTGTACTTAGAGGAGGGTAGGTAACTGCTCCTTCTCAGGAGCTCAGGGAGAAACTGGACCCTCGGCCCCAGAGCCCAAAGAAGGGAATGACCTTCCTAGTGAAGGAGGCAGTGAAGGTGTAGATGGGCTCTCGGGTGGCAGCATTGGTGAAGGTCACCCAGCCCACCTCATAGTCAAGAGACACCCGCACCTGCTGGGGCTGCTCCTTCAGGGTCAGCCGTGTGGGAAAGGAGCCCAGAGCCGAGACGAAGCCCCAGGCCAGCCTCACAGCCCACACGCCCTCCTCTGGCCGCAGTCGAAGCTCTCCCTTCCGCTGCACATCCTCGCTCACCACGCCCATGGTGCAACTGCCCCCGTGTGCCAGGTCTATACTGACCACCCACGTGTGTCTCCCCCCTGTGATGCCAGTGTGGGCCAGAACACAGGTGGCCCGGTCAAAACGCTGGGGATTGTCTGGAGAGTTCTGCCATTTGTAGGAGAACTGAGCCCGCTGGCGGTCCTCGGACAAGAGGAGCTTGGGGTGGGAAGTCTGAGGGTCTAGAGAAATGTGAGCTGTGGGGATAACCAA---AAGGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     493879 646 -    863181 ATTTCTATTCCAAGTCGTCCAGGTAACTCAGCCAGGGATCAAGTCCACGTGGTTCTTGGGTTGATTTGAGTCCTGTACTTAGAGGAGGGTAGGTAACTGCTCCTTCTCAGGAGCTCAGGGAGAAACTGGACCCTCGGCCCCAGAGCCCAAAGAAGGGAATGACCTTCCTAGTGAAGGAGGCAGTGAAGGTGTAGATGGGCTCTCGGGTGGCAGCATTGGTGAAGGTCACCCAGCCCACCTCATAGTCAAGAGACACCCGCACCTGCCGGGGCTGCTCCTTCAGGGTCAGCCGTGTGGGAAAGGAGCCCAGAGCCGAGACGAAGCCCCAGGCCAGCCTCACAGCCCACACGCCCTCCTCTGGCCGCAGTCGAAGCTCTCCCTTCCGCTGCACATCCTCGCTCACCACGCCCACGGTGCAACTGCCCCCGTGTGCCAGGTCTATACTCACCACCCACGTGTGTCTCCCCCCTGTGATGCCAGTGTGGGCCAGAACACAGGTGGCCCGGTCAAAACGCTGGGGATTGTCTGGAGAGTTCTGCCATTTGTAGGAGAACTGAGCCCGCTGGCGGTCCTCGGACAAGAGGAGCTTGGGGTGGGAAGTCTGAGGGTCTAGAGAAATGTGAGCTGTGGGGATAACCAA---AAGGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29642484 646 -  71996105 ATTTCTATTCCAAGTCATCCAGGTGACTCAGCCAGGAATCAAGTCCACATGGTCCTTGGGTTGATTTGAGTCCTGTACTTAGAGGAGGGCAGGTAACTGCTCCTTCTCAGGAGCTCAGGGAGAAACTGGACCCTCGGCCCCAGAGCCCGAAGAAGGGAATGACCTTCCTAGTGAAGGAGGCAGTGAAGGTGTAGATGGGCTCTCGGGTGGCAGCATTGGTGAAGGTCACCCAGCCCACCTCATAGTCAAGAGACACCCGCACCTGCCGGGGCTGCTCCTTCAGGGTCAGCCGTGTGGGAAAGGAGCCCAGAGCCGAGACGAAGCCCCAGGCCAGCCTCACAGCCCACACACCCTCCTCTGGCCGCAGTCGAAGCTCTCCCTTCCGCTGCACATCCTCGCTCACCACACCCACGGTGCAACTGCCCCCGTGTGCCAGGTCTATACTCACCACCCACGTGTGTCTCCCCCCTGTGATGCCAGTGTGGGCCAGAACACAGGTGGCCCGGTCAAAACGCTGGGGATTGTCTGGAGAGTTCTGCCATTTGTAGGAGAACTGAGCCCGCTGGCGGTCCTCGGACAAGAGGAGCTTGGGGTGGGAAGTCAGAGGGTCTAGAGAAATGTGAGCTGTGGGGATAATCAA---AAGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     375312 646 -    735854 ATTTCTATTCCAAGTCGTCCAGGTAACTCAGCCAGGGATCAAGTCCACGTGGTTCTTGGGTTGATTTGAGTCCTGTACTTAGAGGAGGGTAGGTAACTGCTCCTTCTCAGGAGCTCAGGGAGAAACTGGACCCTCGGCCCCAGAGCCCAAAGAAGGGAATGACCTTCCTAGTGAAGGAGGCAGTGAAGGTGTAGATGGGCTCTCGGGTGGCAGCATTGGTGAAGGTCACCCAGCCCACCTCATAGTCAAGAGACACCCGCACCTGCCGGGGCTGCTCCTTCAGGGTCAGCCGTGTGGGAAAGGAGCCCAGAGCCGAGACGAAGCCCCAGGCCAGCCTCACAGCCCACACGCCCTCCTCTGGCCGCAGTCGAAGCTCTCCCTTCCGCTGCACATCCTCGCTCACCACGCCCATGGTGCAACTGCCCCCGTGTGCCAGGTCTATACTGACCACCCACGTGTGTCTCCCCCCTGTGATGCCAGTGTGGGCCAGAACACAGGTGGCCCGGTCAAAACGTTGGGGATTGTCTGGAGAGTTCTGCCATTTGTAGGAGAACTGAGCCCGCTGGCGGTCCTCGGACAAGAGGAGCTTGGGGTGGGAAGTCTGAGGGTCTAGAGAAATGTGAGCTGTGGGGATAACCAA---AAGGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     280847 646 -   1829203 ATTTCTATTCCAAGTCGTCCAGGTGACTCATCCAGGGATCAAGTTCACATGGTTCTTGGGTTGATTTGAGTCCTGTACTTAGAGGAGGGTAGGTAACTGCTCCTTCTCAGGAGCTCAGGGAGAAACTGGACCCTCGGCCCCAGAGCCCAAAGAAGGGAATGACCTTCCTAGTGAAGGAGGCAGTGAAAGTGTAGATGGGCTCTCGGGTGGCAGCATTGGTGAAGGTCACCCAGCCCACCTCATAGTCAAGAGACACCCGCACCTGCCGGGGCTGTTCCTTCAGAGTCAGCCGTGTGGGGAAGGAGCCCAGAGCTGAGACGAAGCCCCAGGCCAGCCTCACAGCCCACACGCCCTCCTCTGGCCTCAGTCGAAGCTCTCCCTTCCGCTGCACATCCTCGCTTACCACGCCCATGGTGCAACTGCCCCCGTGTGCCAGGTCTATACTCACCACCCATGTGTGTCTCCCCCCTGTGATGCCAGTGTGGGCCAGAACACAGGTGGCCCGGTCAAAACGTTGGGGATTGTCTGGCGAGTTCTGCCATTTGTAGGAGAACTGAGCCCGCTGGCGGTCCTCAGACAAGATGAGCTTGGGGTGGGAAGTCTGAGGGTCTAGAGAAATGTGAGCTGTGGGGATAACCAA---AAGGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30480509 645 + 171630274 GTTTCTATT-CAAGTCTTCCAGGTGACCCAGCCAGGGATTAAGTCCACATGGTTCTTGAGTTGATTTGGGTCCTGTACTTAGAAGAGGGTAGGTAACTGCACCTTCTCAGGAGCTCAGGGAGAAACTGGAGCCTCGGCCCCAGAGCCCAAAGAAGGGAATGACCTTCCTAGTGAAGGAGGCAGTGAAGGTGTAGATGGGCTCTCGGGTGACAGCATTGGTGAAGGTCACCCAGCCCACCTCATAGTCAAGAGACACCCGCACCTGCCGGGGCTGCTCCTTCAGAGCCAGCCGTGTGGGGAAGGAGCCCAGAGCGGAGATGAAGCCCCAGGCCAGCCTCACAGCCCACACCCCCTCCTCTGGCCGCAGCCGAAGCTCCCCCTTCCGCTGAACATCCTCGCTCACCACGCCCACCGTGCAGCTGCCCCCGTGGGCCAGATCTACACTCACCACCCACGTGTGTCTCCCCTCTGTGATGCCAGCGTGTGCCAGAACACAGGTGGCCCGGTCAAAACTCTGGGGGTTGTCTGGTGAGTTCTGCCATTTGTAGGAGAACTGAGCCCGCTGGCGGTCCTCGGACAAGAGGAGCTTGGGGTGGGAAGTCTGAGGGTCTAGAGAAATGTGGGCTGTGGGGATAACCAA---AAGGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           286533 645 +    515838 GTTTCTATT-CAAGTTCTCCAGATGACCCAGCCAGGGATTAAGTCCATGTGGTACTTGAGTTGATTTGAATCCCGTACGTAGGGCAGGGTAGGTAACTTCACCTTCTCAGGAGCTCAGGGAGAAACTGGACCCTCGGCCCCAGAGCCCAAAGAAGGGAATGACCTTCCTAGTGAAGGAGGCAGTGAAGGTGTAGATGGGCTCTCGGGTGACAGCGTTGGTGAAGGTCACCCACCCCACCTCGTAGTCAAGAGACACCCGCACCTGCCGGGGCTGCTCCTTCAGGGCCAGCCGTGTGGGGAAGGAGCCCAGAGCGGAGATGAAGCCCCAGGCCAGCCTCACAGCCCACACTCCCTCCTCTGGCCGCAGCCGAAGCTCCCCCTTCCGCTGCACTTCCTCGCTCACCACGCCCACCGTGCAGCTGCCCCCGTGGGCCAGGTCTATACTCACCACCCACGTGTGTCTCCCCCCTGTGATGCCAGCATGTGCCAGAACACAGGTGGCCCGGTCAAAACGCTGGGGGTTGTCTGGCGAGTTCTGCCATTTGTAGGAGAACTGAGCCCGCTGGCCGTCCTCGGACAAGAGCAGCTTAGGGTGGGAAGTCTGAGGGTCTAGAGAAACGTGAGCTGTGGGGATAACCAA---AAGGGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     915727 645 -   1771730 GTTTCTATT-CAAGTCTTCCAGGTGACCCAGCCAGGGATTAAGTCCACATGGTACTTGAGTTTATTTGAATCCTGTACTTAGAGGAGGGTAGGTAACTGCACGTTCTCAGGAGCTCAGGGAGAAACTGGACCCTCGGCCCCAGAGCCCAAAGAATGGAATGACCTTCCTAGTGAAGGAGGCAGTGAAGGTGTAGATGGGCTCTCGGGTGACAGCGTTGGTGAAGGTCACCCAGCCCACTTCATAGTCAAGAGACACCCGCACCTGCCGGGGTGGCTCCTTCAGGGCCAGTCGTGTGGGGAAGGAGCCCAGAGCGGAGATGAAGCCCCAGGCCAGCCTCACAGCCCACACCCCCTCCTCTGGCCGCAGCCGAAGCTCCCCCTTCCGCTGCACATCCTCGCTCACCACGCCCACCGTGCAGCTGCTCCCGTGGGCCAGATCTATACTCACCACCCACGTGTGTCTCCCCCCTGTGATGCCAGTGTGTGCCAGAACACAGGTGGCCCAGTCAAAACGCTGGGGGTTGTCTGGCGAGTTCTGCCATTTGTAGGAGAACTGAGCCCGCTGGCCGTCCTCGGACAAGAGGAGCTTGGGGTGGGAAGTCTGAGGGTCTAGAGAAATGTGAGCTGTGGGGATAGGCAA---AAGAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      96767 645 -    486031 GTTTCTATT-CAAGTCTTCCAGGTGACCCAGCCAGGGATTAAGTCCACATGGTACTTGAGTTGATTTGAGTCCTGTTCTTAGAGGAGGGTAGGTAACTGCACCTTCTCAGGAGCTCAGGGAGAAACTGGACCCTCGGCCCCAGAGCCCAAAGAAGGGAATGACCTTCCTAGTGAAGGAGGCAGTGAAGGTGTAGATGGGCTCACGGGTGACAGCGTTGGTGAAGGTCACCCAGCCCACCTCATAGTCAAGAGACACCCGCACCTGCCGGGGCTGCTCCTTCAGGGCCAGCCGTATGGGGAAGGAGCCCAGAGCAGAAATGAAGCCCCAGGCCAGCCTCACAGCCCACACCCCCTCCTCTGGCCGCAGCCGAAGCTCCCCCTTCCGCTGCACATCCTCGCTCACCACGCCCACCGTGCAGCTGCCCCCGTGGGCCAGGTCTATACTCACCACCCACGTGTGTCTCCCCCCTGTGATGCCAGCGTGTGCTAGGACACAGGTGGCCCGGTCAAAACGCTGGGGGTTGTCTGGTGAGTTCTGCCATTTGTAGGAGAACTGAGCCCGCTGGCAGTCCTCGGACAAGAGGAGCTTGGGGTGGGAAGTCTGAGGGTCTAGAGAAATGTGAGCTGTGGGGGTAACCAA---AAGGGG
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               373068 633 + 123392446 ATTTCCATTCCAGCTTTTCCAGGTGACCCAGCCAGGGATCAAGTCCACGTGGTACCTG-----ACTTTC-TCCTGCACGCAGAGGAGGG------ACTGCGCCCTCTCAGGAGCCGAGGCGGAAGCTGGACCTCCGGCCCCAGAGCCCAAAGAAGGGAAAGACCTTGTGTGTGAAGGAGGCAGTGAAGGTGTGGATGGGCTCGTGGGTGACAGCATTGGTGAAGCTCACCCAGCCCACCTCGTAGTCCAGAGACACCCGCACCTGCTGGGGAGGCTCCTCCAGCGCCAGCCGGACAGGGAAGGCGCCCAGAGCCGAGACGAAGCCCCAGGCCAGCCTCACCGCCCACACGCCCTCCTCTGGCCGCAGACGCAGCTCGCCCTTGCGCGGCACGTCCTCGCTCACCACTCCCAGGGTGCAGCTGCCCCCGGGGGCCAGGTCTACACTCACCACCCACGTGTGCCTGCCCCCCAAGAAGCCATCGTGGGCCAGGACACAGGTGGCCCGGTCAAAACGCTGGGAGCTGTCTGGCGAGTTCTGCCACTTGTAGGAGAACTGGGCACGCTGGTGGTCCTCAGACAAGAGGAGCTTGGGGTGGGAAGTCCGGGGGTCTAGAGAGACGTGAGCTGTGGGGATAACC-A---AAGGGA
i micMur3.chr6             C 0 I 2
s proCoq1.NW_012149775v1     191056 636 -   1411461 ATTTCCATTCCAACTCTTCCAGGTGACGCAGCCAGGGACCAAGTCCACGAGGTACCTG-----ATCTGCGTCCTGTCCTGAGAGGAGGG----TAACTGCACCCTCTCAGGAGCCAAGGGAGAAACTGGACCTCCGGCCCCAGAGCCCAAAGAAGGGAAAGACCTTCCGAGTGAAGGAGGCAGTGAAGGTGTAGATGGGCTCGTGGGTGACAGCGTTGGCGAAGGTCACCCAGCCCACCTCATAGTCGAGAGACACCCGCACCTGCTGGGGCGGTTCCTCCAGTGCCAGCCGTATAGGGAAGGCGTCCAGAGCCGAGACGAAGCCCCAGGCCAGCCTCACTGCCCACACGCCCTCCTCTGGCCGCAGCCGCAGCTCGCCCTTCCGCGGCACATCCTCGCTCACCACTCCCACGGTGCAGCTGCCCCCGTGGGCCAGGTCTACACTCACCACCCACGTGTGTCTGCCCTCCGAGAAGCCATTGTGGGCCAGGACACAGGTGGCCCGGTCAAAACGCTGGGGGCTGTCTGGTGAGTTCTGCCACTTGTACGAGAACTGGGCACGCTGGTGGTCCTCAGACAGGAGGAGCTTGGGGTGGGAAGTCTGGGGGTCTAGAGAGATGTGAGCTATGGGGATAACC-A---AAGGGA
i proCoq1.NW_012149775v1   C 0 I 2
s otoGar3.GL873550           331684 636 +  18854210 ATTTCTATTCCAAGTCTT-CAGGTGACTCAGCCAGGGATCAAGTCAACATAGCACTTC-----GTGTAAGGCCTGTACTTAGAGGAGGG----TAACTGCACCCTGTCAGTAGCTAAGGGAGAAACTGGACCTCCGGCCCCAGAGCCCAAAGAAGGGAAAGACCCTCCTAGTGAAGGAGGCAGTGAAGGTGTAGATAGGCTCGCAGGTGACAGCATTGGCAAAGGTCACCCAGCCCACCTCATAGTCGAGAGACACCCGCACCTGCTGGGGCTGCTCCCTCAGCGCAAGCCTCATGGGGAAGGAGCCTAGAGCCGAGACAAAGCCCCAGGCCAGCCTCAGAGCCCACACCCCCTCCTCTGGCCGCAGTCGAAGCTCTCCCTTCCGCGACATGTCCTCACTCATCACCCCGATGGTGCAGCTGCCCCCATGGGCCAGGTCTACACTCACCACCCATGTGTGTTTCCCCCCTGTGAAGCCATCCTGGGCCAGAACACAGGTGGCCCGGTCAAAACGCTGAGGGCTGTCTGGCGAGTTCTGCCATTTGTAGGAGAACTGAGCACGCCGGTGGTCCTCAGACAAGAGGAGCTTGGGGTGGGAAGTCTGGGGGTCTAGAGAGATGTACACTGTGGGAAAAACCAA---AAGGGA
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               58109845 630 -  94987271 ACTT----------TGTGCTTGGTGACCCAGCCGAGGGTCTGCTCCCAAGGGTGCTTG-----ATTCCAGTCTCATACTCAGAGGAGGG----AAACTGCACCTTCCTGACAGCTCAGGGAAAAACTGGACCCTCTGCCCCAGAGTCCAAACAAGGGAAAGATCTTCTGTGTAAAGGAGGCAGTGAAGGTATAGATATGCTCCTGAGTGACAGCATTGACGAAGGTTATCCAGCCTACCTCATAGTCAAGAGATACCTGCACCTTCCGGGGTTGCTCCTCCAGGGCCAGCCTTGTGGGGAAAGAACCCAGAGCTGAAACAAAGCCCCAAGCCAGCCTCACTGCCCATATTCCCTCCTCTGGTCTCAGCCTCAATTCTCCCTTCCGTCGTACATCTTCTCTGACCACACCTACAGTGCAGCTGCCTCCATGGGCCAAGTCAACATTCACCATCCAAGTGTGTCTCCCCCCTGTAAAACCACATTGGGCCAGAACACAGGTGACTCGATCAAAGCGTTGTGGAGTATCTGGTGAATTCTGCCATTTGTAGGAGAACCGAGCCCGTCGGTGGTCTTCAGAGAGGAGGAGCTTGGGGTGGGAAGTCTGGGGGTCTAGAGAGATATGAGCTATAAAATAAAACAAAACAAGGAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26350466 630 +  26524999 GTTTCTGTCCCTG--CCCCCAGGTGGCACAG--GGGGTGTGAGTCTGAGTAGCCCTCC------TCCGAGCCAAGTACCTGCCTCAGG-----TGACTGCACCTTCTCAGGGGCTCAGGGAGAAGCTGGACCCTCGGCCCCAGAGCCCGAAGAAGGGAAAGACCTTTTGGGTGAAGGACGTTGTGAAGGTATAGATGGGCTCCTGGCTGACGGCGTTGACAAAGGTCACCCAGCCCACCTCGTAGTCGAGGGTCACACGCACCTGGCGGGGCTGCTCCTGCAGGGCCAGTCTCATGGGGAAGGAGCCCAGGGCAGAGACAAAGCCCCAGGCCAGCCTCACGGCCCACACGCCTTCCTCAGGCCGCAGCTTCAGCTCCCCCTTGCGCTTCACATCCTCTCGCACCACGCCCACCGTGCAGCTGCCCCCGTGGGCCAGGTCCACCATCACCATCCATGTGTGTCTCCCCTCTGTGAAGCCGCCGTGCGCCAGGACGCAGGTCGCCCGGTCGAAACGCTGGCTGTTGTCTGGTGAGTTCTGCCATTTGTAGGAGAACTGAGCCCGTCGGTGGTCCTCAGACAGGAGGAGCTTGGGGTGTGATGTCTGTGGGTCTAGGGAAATGGGAGCTGTGCAAA-AACCGA---GAGGGA
i canFam3.chr35            I 17 C 0
e dasNov3.JH567297            45707   0 +     53444 C

a score=36290.000000
s hg38.chr6_GL000254v2_alt  1498586 2 +   4827813 CA
s panPan2.chr6             30602351 2 + 173848474 CA
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01015528v1     309459 2 +   2037526 CA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74975910 2 + 122973662 CA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30854120 2 + 172585720 CA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30143602 2 - 170955103 CA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     392821 2 +   1495729 CA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     494525 2 -    863181 CA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29643130 2 -  71996105 CA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     375958 2 -    735854 CA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     281493 2 -   1829203 CA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30481154 2 + 171630274 CA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           287178 2 +    515838 CA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     916372 2 -   1771730 CA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      97412 2 -    486031 CA
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               373703 2 + 123392446 CA
i micMur3.chr6             I 2 C 0
s proCoq1.NW_012149775v1     191694 2 -   1411461 CA
i proCoq1.NW_012149775v1   I 2 C 0
s otoGar3.GL873550           332322 2 +  18854210 CA
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               58110475 2 -  94987271 CA
i mm10.chr17               C 0 I 2
s canFam3.chr35            26351096 2 +  26524999 CA
i canFam3.chr35            C 0 I 2
e dasNov3.JH567297            45707 0 +     53444 C
e panTro5.chr6             30368020 3 + 175400573 I

a score=361024.000000
s hg38.chr6_GL000254v2_alt  1498588 36 +   4827813 GATGTCAGCAGAC--ATGCTATTACCTCCAAGGAAGGC
s gorGor5.CYUI01015528v1     309461 36 +   2037526 GATGTCAGCAGAC--ATGCTATTACCTCCAAGGAAGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74975912 36 + 122973662 GACGTCAGGAGAC--ATGCTATTACCTCCAAGGAAAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30854122 36 + 172585720 GATGTCAGCAGAC--ATGCTATCACCTCCAAGGAAGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30143604 36 - 170955103 GATGTCAGCAGAC--ATGCTATCACCTCCAAGGAAGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     392823 36 +   1495729 GATGTCAGCAGAC--ATGCTATCACCTCCAAGGAAGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     494527 36 -    863181 GATGTCAGCAGAC--ATGCTATCACCTCCAAGGAAGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29643132 36 -  71996105 GATGTCAGCAGAC--ATGCTATCACCTCCAAGGAAGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     375960 36 -    735854 GATGTCAGCAGAC--ATGCTATCACCTCCAAGGAAGGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     281495 36 -   1829203 GATGTCAGCAGAC--ATGCTATCACCTCCAAGGAAGGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30481156 36 + 171630274 GGTGTCAGAAGAC--ATGCTATTACCTCCAAGGAAGCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           287180 36 +    515838 GGTGTCAGCAGAC--ATGCTATTACCTCCAAGGAAGCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     916374 36 -   1771730 GGTGTCAGCAGAC--ATGCTATTACCTCCAAGGAAGCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      97414 36 -    486031 GGTGTCAGCAGAC--ATGCTGTTACCTCCAAGGAAGCC
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               373705 36 + 123392446 GATGTCAGCGGAC--GTGCCGTTACCTTCAAGGAAGGC
i micMur3.chr6             C 0 I 925
s proCoq1.NW_012149775v1     191696 36 -   1411461 GATGTCAGCAGAC--ATGCTATTACCTTCAAGGAAGGC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           332324 19 +  18854210 GACATCAGTAT-------------------AGGAGGGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58110479 38 -  94987271 TATGTCAATAGGTCAATGCTACAACCTACTAGGATGGC
i mm10.chr17               I 2 C 0
s canFam3.chr35            26351100 12 +  26524999 GATGCCAGGAAG--------------------------
i canFam3.chr35            I 2 C 0
e dasNov3.JH567297            45707  0 +     53444 C
e panPan2.chr6             30602353  1 + 173848474 I
e panTro5.chr6             30368020  3 + 175400573 I

a score=119155.000000
s hg38.chr6_GL000254v2_alt  1498624 14 +   4827813 ATAGAAACTCCCCC-
s gorGor5.CYUI01015528v1     309497 14 +   2037526 ATAGAAACTCCCCC-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74975948 14 + 122973662 ATAGAAACTCCCCC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30854158 14 + 172585720 CTAGAAACTCCCCC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30143640 14 - 170955103 CTAGAAACTCCCCC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     392859 14 +   1495729 CTAGAAACTCCCCC-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     494563 14 -    863181 CTAGAAACTCCCCC-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29643168 14 -  71996105 CTAGAAGCTCCCCC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     375996 14 -    735854 CTAGAAACTCCCCC-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     281531 14 -   1829203 CTAGAAAGTCCCCC-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30481192 14 + 171630274 CTAGAAACTTCCCC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           287216 14 +    515838 CTAGAAACTTCCCC-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     916410 14 -   1771730 CTAGAAACTTCCCC-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      97450 14 -    486031 CTAGAAACTTCCCC-
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     191732 13 -   1411461 -CTGAAACTCCCCC-
i proCoq1.NW_012149775v1   C 0 I 387
s otoGar3.GL873550           332343 13 +  18854210 -CTAAAATCTCCCC-
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58110517 14 -  94987271 CTAAAAATCTTACT-
i mm10.chr17               C 0 I 8
s canFam3.chr35            26351112  4 +  26524999 -----------CCCG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               373741 925 + 123392446 I
e dasNov3.JH567297            45707  0 +     53444 C
e panPan2.chr6             30602353  1 + 173848474 I
e panTro5.chr6             30368020  3 + 175400573 I

a score=3374464.000000
s hg38.chr6_GL000254v2_alt  1498638 425 +   4827813 TGGGCCC---------CTCCTGTTAGTGTTATTATTACCAAAAACATGTATAGTGCCTAcgtgggccaacagtgtggaaccacctgggaacttgttagatatacg--ctctcagaatctgcatccta-----acaagatgcccaggtgatttgcacacag------gtaaagcctgaaaagcCTGCCTCAGAGGATGTGAAAGCTCTCGTTTAGTTCAGTGTGGTCCTCGGGAAAGCTCTTCTGCTCACCGCAAGTTGGTTGGTTTCCAAAGCT-------GTGCGTGC-CAGCTTGGATCTCCTGGGGCTG--------------------ATATACCACATTCTCCCC-TCCTCCCATCTCTAT-------CCCACAGTGCAGCG-----------------------------------------------------------------------------ACATTTCTCCCTTCA------GTCCAAACT---TCATGAT-----TCCTCCCTGTTTTCCTCCCAGGGCACTGGT-GACTCATTT------ACAGTCTTCCC-TCCTGGCAGGCTCTC
s gorGor5.CYUI01015528v1     309511 424 +   2037526 TGGGCCC---------CTCCTGTTAGTGTTATTATTACCAAAAACATGTATAGTGCCTAcgtggaccaacagtgtggaaccacctgggaacttgttagatatacg--ctctcagaatctgcatccta-----acaagatgcccaggtgatttgcacacag------gtaaagcctgaaaagcCTGCCTCAGAGGATGTGAAAGCTCTCGTTTAGTTCAGTGTGGTCCTCGGGAAAGCTCCTCTTCTCACCGCAAATTGGTTGGTTTCCAAAGCT-------GTGTGTGC-CAGCTTGGATCTCCTGGGGCTG--------------------ATACACCACATTCTCCCC-TCCTCCCATCTCTAT-------CCCAGAGCGCAG-G-----------------------------------------------------------------------------ACATTTCTCCCTTCA------GTCCAAACT---TCATGAT-----TCCTCCCTGTTTTCCTCCCAGGGCACTGGT-GACTCATTT------ACAGTCTTCCC-TCCTGGCAGGCTCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74975962 425 + 122973662 TGGGCCC---------CTCCTGTTAGTGTTATTATTACCAAAAACATGTATAGTGCCTAcgtggaccaacagtgtggaatcacctgggaacctgttagatataca--ctctcagaatctgcagctta-----aaaagacgcccaggtgattcgcgcacag------gtaaagcctgaaaagcCTGCCTCAGAGCATGAGAAAGCTCTCGTTTAGTTCAATGTGGTCCTTGGGAAAGCTCTTCTGCTCACCGCAAATTGGTTGGCTTCCAAAGCT-------GTGTGTGC-CAGCTTGGATCTCCTGGGGCCG--------------------AGACACCACAGTCTCCCC-TCCTCCCATCTCTAT-------CCCAGAGTGCAGCG-----------------------------------------------------------------------------ACATTTCTCCCTTCA------GTCCAAACT---TCATGAT-----TCCTCCCTGCTTCCCTCCCAGAGCACTGGT-GACTCATTT------ACAGTCTTCCC-TCCTGGCAGGCTCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30854172 425 + 172585720 TGGGCCC---------CACCTGTTAGTGTTATTATTACCAAAAACAGGTCTAGTGCCTAcatggaccaacagtgtggcatcacctgggaacttgtttgatataca--ctctcagaatctgcatccta-----acaagatgcccaggtgattcgtgcacgt------gtaaagcctgaaaagcCTGCCTCAGAGGATGTGAAAGCTCTCGTTTAGTTCCATGTGGTCCTTGGGAAAGCTCTTCTGCTCATCGTAAATTGGTTAGTTTCCACAGCT-------GTGTGTGC-CAGCTCGGCTCTCCTGGGGCCA--------------------ATACACCACATTCTCCCC-TCCTCCTGTCTCTAT-------CCCGGAGTGCAGAG-----------------------------------------------------------------------------ACATTTCTCCCTTCA------GTCCAAACT---TCATGAT-----TCCTCCCTGCTTTCCTCCCAGGGCACTGGT-GACTCATTT------ATAGTCTTCCC-TCTTGGCAGGCTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30143654 425 - 170955103 TGGGCCC---------CACCTGTTAGTGTTATTATTACCAAAAACAGGTCTAGTGCCTAcatggaccaacagtgtggcatcacctgggaacttgtttgatataca--ctctcagaatctgcatccta-----acaagatgcccaggtgattcgtgcacgt------gtaaagcctgaaaagcCTGCCTCAGAGGATGTGAAAGCTCTCGTTTAGTTCCATGTGGTCCTTGGGAAAGCTCTTCTGCTCATCGTAAATTGGTTAGTTTCCACAGCT-------GTGTGTGC-CAGCTCGGCTCTCCTGGGGCCA--------------------ATACACCACATTCTCCCC-TCCTCCTGTCTCTAT-------CCCGGAGTGCAGAG-----------------------------------------------------------------------------ACATTTCTCCCTTCA------GTCCAAACT---TCATGAT-----TCCTCCCTGCTTTCCTCCCAGGGCACTGGT-GACTCATTT------ATAGTCTTCCC-TCTTGGCAGGCTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     392873 425 +   1495729 TGGGCTC---------CACCTGTTAGTGTTATTATTACCAAAAACAGGTCTAGTGCCTAcatggaccaacagtgtggcatcacctgggaacttgtttgatataca--ctctcagaatctgcatccta-----acaagatgcccaggtgattcgtgcacgt------gtaaagcctgaaaagcCTGCCTCAGAGGATGTGAAAGCTCTCGTTTAGTTCCATGTGGTCCTTGGGAAAGCTCTTCTGCTCATCGTAAATTGGTTAGTTTCCACAGCT-------GTGTGTGC-CAGCTCGGCTCTCCTGGGGCCA--------------------ATACACCACATTCTCCCC-TCCTCCTGTCTCTAT-------CCCGGAGTGCAGAG-----------------------------------------------------------------------------ACATTTCTCCCTTCA------GTCCAAACT---TCATGAT-----TCCTCCCTGCTTTCCTCCCAGGGCACTGGT-GACTCATTT------ATAGTCTTCCC-TCTTGGCAGGCTCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     494577 425 -    863181 TGGGCCC---------CACCTGTTAGTGTTATTATTACCAAAAACAGGTCTAGTGCCTAcatggaccaacagtgtggcatcacctgggaacttgtttgatataca--ctctcagaatctgcatccta-----acaagatgcccaggtgattcgtgcacgt------gtaaagcctgaaaagcCTGCCTCAGAGGATGTGAAAGTTCTCGTTTAGTTCCATGTGGTCCTTGGGAAAGCTCTTCTGCTCATCGTAAATTGGTTAGTTTCCACAGCT-------GTGTGTGC-CAGCTCGGCTCTCCTGGGGCCA--------------------ATACACCACATTCTCCCC-TCTTCCTGTCTCTAT-------CCCGGAGTGCAGAG-----------------------------------------------------------------------------ACATTTCTCCCTTCA------CTCCAAACT---TCATGAT-----TCCTCCCTGCTTTCCTCCCAGGGCACTGGT-GACTCATTT------ATAGTCTTCCC-TCTTGGCAGGCTCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29643182 423 -  71996105 TGGGCCC---------CACCTGTTAGTGTTATTATTACCAAAAACAGGTCTAGTGCCTAcatggaccaacagtgtggcatcacctgggaacttgtttgatataca----ctcagaatctgcatccta-----acaagatgcccaggtgattcgtgcacat------gtaaagcctgaaaagcCTGCCTCAGAGGATGTGAAAGCTCTCGTTTAGTTCCATGTGGTCCTTGGGAAAGCTCTTCTGCTCATCGTAAATTGGTTAGTTTCCACAGCT-------GTGTGTGC-CAGCGCGGATCTCCTGGGGCCG--------------------ATACACCACATTCTCCCC-TCCTCCCGTCTCTAT-------CCTGGAGTGCAGAG-----------------------------------------------------------------------------ACATTTCTTCCTTCA------GTCCAAACT---TCATGAT-----TCCTCCCTGCTTTCCTCCCAGGGCACTGGT-GACTCATTT------ATAGTCTTCCC-TCTTGGCAGGCTCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     376010 425 -    735854 TGGGCCC---------CACCTGTCAGTGTTATTATTACCAAAAACAGGTCTAGTGCCTAcatggaccaacagtgtggcatcacctgggaacttgtttgatataca--ctctcagaatctgcatccta-----acaagatgcccaggtgattcgtgcacgt------gtaaagcctgaaaagcCTGCCTCAGAGGATGTGAAAGCTCTCGTTTAGTTCCATGTGGTCCTTGGGAAAGCTCTTCTGCTCATCGTAAATTGGTTAGTTTCCACAGCT-------GTGTGTGC-CAGCTCGGCTCTCCTGGGGCCA--------------------ATACACCACATTCTCCCC-TCTTCCTGTCTCTAT-------CCCGGAGTGCAGAG-----------------------------------------------------------------------------ACATTTCTCCCTTCA------CTCCAAACT---TCATGAT-----TCCTCCCTGCTTTCCTCCCAGGGCACTGGT-GACTCATTT------ATAGTCTTCCC-TCTTGGTAGGCTCTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     281545 425 -   1829203 GGGGCCC---------CACCTGTTAGTGTTATTATTACCAAAAACAGGTCTAGTGCCTAcatggaccaacagtgtggcatcacctgggaacttgtttgaaataca--ctctcagaatctgcatccta-----acaagatccccaggtgattcgtgcacgt------gtaaagcctgaaaagcCTGCCTCAGAGGATGTGAAAGCTCTCGTTTAGTTCCATGTGGTCCTTGGGAAAGCTCTTCTGTTCATCGCAAATTGGTTAGCTTCCAAAGCT-------GTGTGTGC-CAGCTTGGATCTCCTGGGGCCA--------------------ATACACCACATTCTCCCC-TCCTCCCATCTGTAT-------CTCAGAGTGCAGAG-----------------------------------------------------------------------------ACATTTCTCCCTTCA------GTCCAAACT---TCATGAT-----TCCTCCCTGCTTTCCTCCCAGGGCACTGGT-GACTCATTT------ATAGTCTTCCC-TCCTGGCAGGCTCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30481206 425 + 171630274 GGGGACC---------CACCTGCTAGTGTTATTATTACCAAAACCATAtatagtccctacgtggaccaacagtgtggcatcacctgggaagttgttagatataca--ctgtcagaatctgcatgcta-----acaaaatgcccaggtgattcgtgcacat------ggaaagcctgagaagcCTGCCTCAGAGGATGCAACAGCTCTCATTTAGTTCCATGTGGTCCTCGGGTAAGCTCTTCTGCTCACCACAAATTGATTGGCTTCCAAAGCT-------GCGTGTGC-CTGCTCAGATCTCCTGCTGCTG--------------------ATACACCACATTCTCCGC-TCTTCCCAGCTCTAT-------CCCACAGGGCAGAG-----------------------------------------------------------------------------ACATTTCTCCCTTCA------GTCCAACCT---TCATGAT-----TCCTCCCGGCTTTCCTCCCAGAGCACTTGT-GATTCATTT------ATAGTCTTCCT-TTCTGCCAGGCTCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           287230 425 +    515838 TGGGACC---------CACCCATTAGTGTTATTATTACCAAAACCATATACAGTCTCTAcgtggaccaacagtgtggcctcacctgggaacttgttagatataca--ctgtcagaatctgcatccta-----acaaaatgcccgggtgattcgtgcacat------ggaaagcctgagaagcCTGCCTCAGAGGATGCAACAGCTCTCATTTAGTTCCATGTGGTCCTCGGGAAAGCTCTTCTGCTCACCGCGAATTGATTGGCTTCCAAAGTT-------GCATGTGC-CTGCTCGGATCTCCTGCTGCTG--------------------ATACACCACATTCTCTGC-TCTTCCCATGTCTAT-------CCCGGAGGGCAGAG-----------------------------------------------------------------------------ACATCTCTCCCTTCA------GTCCAATCT---TCATGAT-----TCCTCCCTGCTTTCCTCGCAGAGCACTTGT-GACTCATTT------ACAGTCTTCCC-TCCTTCCAGGCTCTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     916424 424 -   1771730 TGGGACC---------CACCCATTAGTGTTACTATTACCAAAATCATATATACTCCCTATGTGGACCAA-AATGTGgcatcaccagggaacttgttagatataca--ctgtcagaatctgcatccta-----acaaaatgcccaggtgattcgtacacat------ggaaagcctgagaagcCTGCCTCAGAGGATGCGACAGCTCTCGTTTAGTTCCATGTGGTCCTTGGGAAAGCTCTTCTGCTCACCACAAATTGATTGGCTTCCAAAGTT-------GCGTGTGC-CTGCTCGGATCTCCTGCTGCCG--------------------ATACACCACATTCTCCGC-TCTTCCCATGTCTAT-------CCCGGAGGGCAGAG-----------------------------------------------------------------------------ACATTTCTCCCTTCA------GTCCAACCT---TCATGAT-----TCCTCCCCGCTTTCCTCCCAGAGCACTTGT-GACTCATTT------ACAGTATTCCC-TCCTGCCAGGCTCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      97464 425 -    486031 TGGGACC---------CACCCGTTAGTGTTATTATTACCAAAACCACAtatagtccctacgtggaccaacaatgtggcatcacctgggaacttgttagatataca--ctgtcagaatctgcatccta-----acaaaatgcccaggtgattcgtgaacat------ggaaagcctgagaagcCTGCCTCAGAGAATGCGACAGCTCTCATTTAGTTCCATGTGGTCCTCGGGAAAGCTCTTCTGCTCACCATAAATTGATTGGCTTCCAAAGCT-------GCGTGTGC-CTGCTCGGATCTCCTGCTGCTG--------------------ATACACCACATTCTCCGC-TCTTCCCATCTCCAT-------CCCGGAGGGCAGAG-----------------------------------------------------------------------------ACATTTCTCCTTTCA------GTCCAACCT---TCATGAT-----TCCTCCCCGCTTTCCTCCCAGAGCACTTGT-GACTCATTT------ACAGTCTTCCC-TCCTGCCAGGCTCTC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           332357 418 +  18854210 -TGGTGT---------CCCCTATAAGCACTATTGTTACCAACAACATGTGCAGTGCCTAcatggaccagcagtgtggcatcacctgggaactggttagacatacggcctctcagaatctgcatccta-----acaagatgccca-gtgatgcatgcacatg-----gtaaaggctgaggagcCTGCCTCA-AGGAGGCAGCAGCTCTCATATGGGTCTGTGCCGTCCTCTGGACAGCTGTTTTGCTCACCACACCCTGGCTGGCTTCCAAAGCT-------ATGAGTGC-CTGCTGGGACCTGCTCCTGCTG--------------------CTACTCTTCACCCTCCCA-TCCCTGTGGCTCTGT-------CTCAG---GAGGAG-----------------------------------------------------------------------------ACAATTCCTCCAT-----------GAAACT---TGGTGGT-----ACCCCCCTGCCTCCCTCCCAGGGCACTTGC-AACTCATCT------ATCTACTTTCCATTCCCGCAAGCTCTC
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58110539 519 -  94987271 TGGA----------------TGCTAGTGTT----------GAATCAG---------CTGTGTGTTCCAGAACATGGGTATCGCTAAGGAACTGGTTagacctgca--gactaaaaatctgcatccta-----agaggatgtcatggggatgcatgtgcatt-----ttacagtcagaaaagcCAGTTGCAAAGAGTATG-CTGCCCCCGCATGGTC---TACCATCCTCTGGAAAACTGTACAGCTCA--------TGACTAGCATTCAAACCTCCTGCTGGTGAACACACAACCTGCCTCCCACATGGGCACCCTCACAAACTGCCTCTTCATACATAGCCTTATCCATGGCCTCCCACCTCTGTTGCTTCCCCTCAAGTACAGCGTTTTTGTACAGGGGCCACACTGATATCGACACGCAGCCACTTTCACATCTGTGCATCCTCCTCATGAACACACTCTCACACTTCCTCCCCCAAGTCCCAGCCAACCTCACCCATGATCAGCCTCTTACAGGCCTTTCTTACATAG--CCAAT-GATACATCTGTACACACAGTCTCCCC-TCTTAGCACAGCATC
i mm10.chr17               I 8 I 580
s canFam3.chr35            26351116 374 +  26524999 TGAGCCCTGTGTCTCGCACCTGCCAGTG-----ACTGGCAGA------------GTCCGGGTGGCACAGCAGGACGGGTTCACCTGGGCACCTGCTAGGCATACC--GGAGCTGACTCCACCTCAGACCACCCCAAACAGTCCGGGCCATTTGCGCTCACTGCGGACTGGTGCTCACGCTGCCTGCCAC--GGGATGCCTTAGCTCCCCCATGTCCCACTGTCAGCTCTGGG----------TGGTCAC-----------------CCCAGGCC-------ATACCTGC-CTACTCTGGCTTGTGGCTGCCA--------------------ACAC--------CCGTCT-TCCCCCCATGTCCGA-------CCT--------GAG-----------------------------------------------------------------------------ATG-----CCCTCCA------CTCCAAACC---CCATGGC-----TCGTTCACGGTCTGCTCCCTGCCAGCTGTCAGGCTTGTCT------GCAGGTTATCC-CCATTGC-----CTC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               373741 925 + 123392446 I
e dasNov3.JH567297            45707   0 +     53444 C
e proCoq1.NW_012149775v1     191745 387 -   1411461 I
e panPan2.chr6             30602353   1 + 173848474 I
e panTro5.chr6             30368020   3 + 175400573 I

a score=120318.000000
s hg38.chr6_GL000254v2_alt  1499063 18 +   4827813 ---TGGCTCACCCCTGGGTTA---
s gorGor5.CYUI01015528v1     309935 18 +   2037526 ---TGGCTCACCTCTGGGTTA---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74976387 18 + 122973662 ---TGGCTCACCCCTGGATTA---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30854597 18 + 172585720 ---TGGCTCACGCCTGGGTTA---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30144079 18 - 170955103 ---TGGCTCACGCCTGGGTTA---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     393298 18 +   1495729 ---TGGCTCACGCCTGGGTTA---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     495002 18 -    863181 ---TGGCTCACGCCTGGGTTA---
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29643605 18 -  71996105 ---TGGCTCACGCCTGGGTTA---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     376435 18 -    735854 ---TGGCTCACGCCTGGGTTA---
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     281970 18 -   1829203 ---TGGCTCACACCTGGGTTA---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30481631 18 + 171630274 ---TGGCTCACCCCCAGGTTA---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           287655 18 +    515838 ---TGGCTCTCCCCCGGGTTA---
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     916848 18 -   1771730 ---TGGCTCACCCCTGGGTTA---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      97889 18 -    486031 ---TGGCTCACCCCCGGGTTA---
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           332775  8 +  18854210 ---TGACTCAC-------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26351490 24 +  26524999 TGTCGGtttttttttttttttttt
i canFam3.chr35            C 0 C 0
e micMur3.chr6               373741 925 + 123392446 I
e mm10.chr17               58111058 580 -  94987271 I
e dasNov3.JH567297            45707  0 +     53444 C
e proCoq1.NW_012149775v1     191745 387 -   1411461 I
e panPan2.chr6             30602353  1 + 173848474 I
e panTro5.chr6             30368020  3 + 175400573 I

a score=952975.000000
s hg38.chr6_GL000254v2_alt  1499081 105 +   4827813 TTCACTCTGCCTcagtaattctgaaactgtcagagtctgaggaccactttttaccaccaaaaactgctgcagagccttgcgttttgttacttttagtattcataa
s gorGor5.CYUI01015528v1     309953 105 +   2037526 TTCACTCTGCCTcagtaattctgaaactgtcagagtctgaggaccactttttaacaccaaaaactgctgcagagccttgcatttcgttacttttagtattcataa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74976405 105 + 122973662 TTCACTCTGCCTcagtaattctgaaactgtcagagtctgaggaccactttttaacaccaaaaactgctgcagagtcttgcattttgttacttttagtattcataa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30854615 105 + 172585720 TTCACTCTGCCTcagtaattctgaaactgtcagagtctgaggaccactttctaacaccaaaagctgctgcagagctttgcattttgttacttttagtattcataa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30144097 105 - 170955103 TTCACTCTGCCTcagtaattctgaaactgtcagagtctgaggaccactttctaacaccaaaagctgctgcagagctttgcattttgttacttttagtattcataa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     393316 105 +   1495729 TTCACTCTGCCTcagtaattctgaaactgtcagagtctgaggaccactttctaacaccaaaagctgctgcagagctttgcattttgttacttttagtattcataa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     495020 105 -    863181 TTCACTCTGCCTcagtaattctgaaactgtcagagtctgaggatcactttccaacaccaaaagctgctgcagagctttgcattttgttacttttagtattcataa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29643623 105 -  71996105 TTCACTCTGCCTcagtaattctgaaactgtcagagtctgaggatcactttctaacaccaaaagctgcttcggagctttgcattttgttacttttagtattcataa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     376453 105 -    735854 TTCACTCTGCCTcagtaattctgaaactgtcagagtctgaggatcactttctaacaccaaaagctgctgcagagctttgcattttgttacttttagtattcataa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     281988 105 -   1829203 TTCACTCTGCCTcagtaattctgaaactgtcagagtctgaggaccactttctaacaccaaaagctgctgcagagctttgcattttgttacttttagtattcatac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30481649 104 + 171630274 TTCACACTGCCTCAGTAATTCTAAAACTGTCCGAGTCTGAGGACCACACTTTAACACCAATGACTTCTGCAAAGCTTTGCATTTTGTTACTTT-AGTATTCATAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           287673  94 +    515838 TTCACTCTGCCTCAGTAATTCTAAAACTGTCCCAGTCTGAGGACCACATTTTAACACCAATGACTTCTGCAGAGCCTTGCATTTTGTTACTTT-----------A
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     916866 103 -   1771730 TTCACTCTGCCTCAGTAATTCTAAAACTGTCT-AGCCTGAGGACCACATTTTAACACCAATGATTTCTGCATAGCCTTGCATTTTGTTACTTT-AGTATTCATAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      97907 104 -    486031 TTCACTCTGCCTTagtaattctaaaactgtccgagtctgaggaccacattttaacaccaatgacttctgcagagccttgcattttgttacttt-agtattcataa
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     192132 105 -   1411461 TTCACTCTGCCTTAGTAACTCTAAGACCttcagagtctgaagaccacttttcagcaccaaaaacttctgcagacccctgcatattgtgacttttagcattcataa
i proCoq1.NW_012149775v1   I 387 C 0
s otoGar3.GL873550           332783  91 +  18854210 -TCACTCTGCCTTTGTTATTCTAAAACTCTCAGAGTCTGAGG-------------ACCAAAACCTTCTGTAGACCCCTGCATATTGTAACTTTTAGTATTCATAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26351514  92 +  26524999 ttttttttGCCTCTGTCATTTTAAAGCCATCAGGGTC-------------ATACCTCAAGGGGCCTCCATAAACCCCTGCATTGTGTGGCTGTTACTGTCCTAGG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               373741 925 + 123392446 I
e mm10.chr17               58111058 580 -  94987271 I
e dasNov3.JH567297            45707   0 +     53444 C
e panPan2.chr6             30602353   1 + 173848474 I
e panTro5.chr6             30368020   3 + 175400573 I

a score=2458339.000000
s hg38.chr6_GL000254v2_alt  1499186 214 +   4827813 attgagaaGCTTCCATAAATTTAGGTCCATCTGTG-----GGTTAGAGAACC--------------CCCTCCAACAACTCCGTGACTCCCA-----GGGTCTTAGGCTGGTTGATTAAGAAATGACAGCCTTGAAGGGGTCCATTCTGTTCATTTTTTTCCCACCCACAGGCCGCCCTCCTTCTGTCATCTGTG-AAATGACATCTGAGAGGAAGCAGGGGTTCCTTAC-GTTCTAAAGA
s panTro5.chr6             30368023 215 + 175400573 ATTGAGAAGCTTCCATAAATTTAGGTCCATCCGTG-----GGTTAGAGAACC--------------CCCTCCAACAACTCCGTGACTCCCA-----GGGTCTTAGGCTGGTTGATTGAGAAATGACAGCCTTGAAGGGGTCCATTCTGTTCATTTTTTTCCCACCCACAGGCCGCCCTCCTTCTGTCATCTGTG-AAATGACATCTGAGAGGAATCAGGGGTTCCTCACCGTTCTAAAGA
i panTro5.chr6             I 3 C 0
s panPan2.chr6             30602354 215 + 173848474 ATTGAGAAGCTTCCATAAATTTAGGTCCATCCGTG-----GGTTAGAGAACC--------------CCCTCCAACAACTCCGTGACTCCCA-----GGGTCTTAGGCTGGTTGATTGAGAAATGACAGCCTTGAAGGGGTCCATTCTGTTCATTTTTTTCCCACCCACAGGCCGCCCTCCTTCTGTCATCTGTG-AAATGACATCTGAGAGGAATCAGGGGTTCCTCACCGTTCTAAAGA
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01015528v1     310058 215 +   2037526 attgagaaGCTTCCATAAATTTAGGTCCATCCGTG-----GGGTAGAGAACC--------------CCCTCCGACAACTCCGTGACTCCCA-----GGGTCTTAGGCTGGTTGATTGAGAAATGACAGCCTTGAAGGGGTCCATTCTGTTCATTTTTTTCCCACCCACAGGCCGCCCTCCTTCTGTCATCTGTG-AAATGACATCTGAGAGGAAGCAGGGGTTCCTCACAGTTCTAAAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74976510 224 + 122973662 attaagaaGCTTCCATAAATTTAGATCCATCCATG-----GGTTAGAGAACCACCCCCGCACACCGCCCGCCAACAACTCCGTGACTCCCA-----GGGTCTTAGGCTGGTTGATTGAGAAATGACAGCCTTGAAGGGGTCCATTCTGTTGATTTCTTTCC------CAGGCCGCCCTCCTTCTGTCTTCTGTGTAAATGACATCTGAGAGGAAGCAGGGGTTCCTCACAGTTCTAAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30854720 215 + 172585720 attgagaaGCTTCCATAAATTTAGGCCCATCCATG-----GGTTAGAGAACC--------------CCCTCCAACAACTCTGTGACTCCCA-----GGTTCTTAGGCTGGTTGATTGAGAAACGACAGCCTTGAAGGGGTCCCTTCTGTTCATTTCTTTCCCACCCACAGGCCACCCTCCTTCTGTCATCTGTG-AAATGACATCTGAGAGGAAGCAGGGGTTCTTCACAGTTCTAAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30144202 215 - 170955103 attgagaaGCTTCCATAAATTTAGGCCCATCCATG-----GGTTAGAGAACC--------------CCCTCCAACAACTCTGTGACTCCCA-----GGTTCTTAGGCTGGTTGATTGAGAAACGACAGCCTTGAAGGGGTCCCTTCTGTTCATTTCTTTCCCACCCACAGGCCACCCTCCTTCTGTCATCTGTG-AAATGACATCTGAGAGGAAGCAGGGGTTCTTCACAGTTCTAAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     393421 215 +   1495729 attgagaaGCTTCCATAAATTTAGGCCCATCCATG-----GGTTAGAGAACC--------------CCCTCCAACAACTCTGTGACTCCCA-----GGTTCTTAGGCTGGTTGATTGAGAAACGACAGCCTTGAAGGGGTCCCTTCTGTTCATTTCTTTCCCACCCACAGGCCACCCTCCTTCTGTCATCTGTG-AAATGACATCTGAGAGGAAGCAGGGGTTCTTCACAGTTCTAAAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     495125 215 -    863181 attgagaaGCTTCCATAAATTTAGGCCCATCCATG-----GGTTAGAGAACC--------------CCCTCCAACAACTCTGTGACTCCCA-----GGTTCTTAGGCTGGTTGATTGAGAAACGACAGCCTTGAAGGGGTCCCTTCTGTTCATTTCTTTCCCACCCACAGGCCACTCTCCTTCTGTCATCTGTG-AAATGACATCTGAGAGGAAGCAGGGGTTCTTCACAGTTCTAAAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29643728 215 -  71996105 attgagaaGCTTCCATAAATTTAGGCCCATCCATG-----GGTTAGAGAACC--------------CCCTCCAACAACTCTGTGACTCCCA-----GGTTCTTAGGCTGGTTGATTGAGAAACGACAGCCTTGAAGGGGTCCCTTCTGTTCATTTCTTTCCCACCCACAGGCCACCCTCCTTCTGTCATCTGTG-AAATGACATCTGAGAGGAAGCAGGGGTTCTTCACAGTTCTAAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     376558 215 -    735854 attgagaaGCTTCCATAAATTTAGGCCCATCCATG-----GGTTAGAGAACC--------------CCCTCCAACAACTCTGTGACTCCCA-----GGTCCTTAGGCTGGTTGATTGAGAAACGACAGCCTTGAAGGGGTCCCTTCTGTTCATTTCTTTCCCACCCACAGGCCACCCTCCTTCTGTCATCTGTG-AAATGACATCTGAGAGGAAGCAGGGGTTCTTCACAGTCCTAAAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     282093 215 -   1829203 attgagaaGCTTCCATAAATTTAGGCCCATCCATA-----GGTTAGAGAACC--------------CCCTTCAACAACTCCGTGACTCCCA-----GGTTCTTAGGCTGGTTGATTGAGAAACGACAGCCTTGAAGGGGTCCCTTCTGTTCATTTCTTTCCCACCCACAGGCCACCCTCCTTCTGTCATCTGTG-AAATGACATCTGAGAGGAAGCAGGGGTTCTTCACAGTTCTAAAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30481753 185 + 171630274 GTTAAGAAGCTTCTGTAAATTCAGATCCATCCATG-----GGTTACAGAACC--------------CTCTCCAACAACTCCGTGATTCCCA-----GG-----------------------------GTCTTGCA-GGGTCCATTCTGTTCATTTCTTTCCCACCCACAGGCCCCCTTCCTTCTGTCATCTGTG-AAATCACATCTGAGAGGAAGCAGGGGTTCCTCACAGTTCTAAAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           287767 213 +    515838 GTCGAGAAGCTTCTGTAAATTCAGATCCATCCATG-----GGTTACAGAACC--------------CCCTCCAACAACTCCATAACTCCCA-----GG-TCTTAGGCTGGTTGGTTGAGAAACAACAGCCTTGCA-GGGTCCATTCTGTTCATTTCTTTCCAACCCACAGGCCACCTTCCTTCCATCATCTGTG-AAATCACATCTGAGAGGAAGCAGGGGTTCCTCACAGTTCTGAAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     916969 214 -   1771730 GTTGAGAAGCTTCTGTAAATGCAGATCCATCCATG-----GATTACAGAACC--------------CGCTCCAAAAACTCTGTGACTCCCA-----GGGTCTTAGGCTGGTTGATTGAGAAGCAACAGCCTTGCA-GGGTCCATTCTGTTCATTTCTTTCCCACCCACAGGCCACCTTCCTTCTGTCATCTGTG-AAATCACATCTGAGAGGAAGCAGGGGTTCCTCACAGTTCTAAAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      98011 214 -    486031 gttgagaaGCTTCTGTAAATTCAGATCCATCCATG-----GGTTACAGAACC--------------CCCTCCAACAACTCCGTGACTCCCA-----GGGTCTTAGGCTGGTTGACTGAGAAACAACAGCCTTGCA-GGGTCCATTCTGTTCATTTCTTTCCCACCCACAGGCCACCTTCCTTCTGTCATCTGTG-AAATCACATCTGAGAGGAAGCAGGGGTTCCTCACAGTTCTAAAGA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     192237 212 -   1411461 attcagaaaaCCTCATAAATTTAGAAACAGCAATG-----GGTTAGTGAGCC--------------CCTTCCAACACCTCCGTGACTCCCG-----GGGTCTTTGGCTGAATCACTGGGGA-CAACGGCCTCGAA-GGGTCCGCTCTGGTCCTT-CTTTCCCGCCCACAGGCCGCCCTCCTTCTGTCATCTGTG-AAATGACATCTGAGAGGACGCAGGCGTTCCTGACGGTTCTAAAGA
i proCoq1.NW_012149775v1   C 0 I 13
s otoGar3.GL873550           332874 211 +  18854210 ACTAAAAAATTATCATGCATTTGGATACATCCATG-----GGTTAGTGAGCC--------------TCTTCTAACAATTCCTTGACTCCCA-----GGGTCTTTGGCTGTTTCACTGGGAA-CAAATGCCCTGAAGGGGTCCATTCTATTCATTCCTTTTCCACCCACAGGCCATCCTCCTTCTGTCACCC----CAATGACATCTTAGAGGAAGCAGGGGCTTCTGACAGTTCTAAGAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26351606 149 +  26524999 GCCAAGA------CACAAAG--AAATCCACACATGCGCCCCGTCAGAGAAGC--------------TCTTACAGCAGCGC--TGGCTCCCAGAGAGGGGTCTTTGGCTGACTG----------------------------------------TACCCTCCCATCC-----------------------CTGAG-AAACTCCACCTGAGGGGA--CTGCAGTTCCCTAGGATCCCAACA-
i canFam3.chr35            C 0 C 0
e micMur3.chr6               373741 925 + 123392446 I
e mm10.chr17               58111058 580 -  94987271 I
e dasNov3.JH567297            45707   0 +     53444 C

a score=20796.000000
s hg38.chr6_GL000254v2_alt  1499400 3 +   4827813 -GGT
s panTro5.chr6             30368238 3 + 175400573 -GGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30602569 3 + 173848474 -GGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     310273 3 +   2037526 -GGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74976734 3 + 122973662 -GGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30854935 3 + 172585720 -TGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30144417 3 - 170955103 -TGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     393636 3 +   1495729 -TGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     495340 3 -    863181 -TGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29643943 3 -  71996105 -TGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     376773 3 -    735854 -TGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     282308 3 -   1829203 -TGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30481938 3 + 171630274 -TAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           287980 3 +    515838 -TAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     917183 3 -   1771730 -TAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      98225 3 -    486031 -TAT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           333085 3 +  18854210 -TAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26351755 4 +  26524999 GTGT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               373741 925 + 123392446 I
e mm10.chr17               58111058 580 -  94987271 I
e dasNov3.JH567297            45707 0 +     53444 C
e proCoq1.NW_012149775v1     192449 13 -   1411461 I

a score=1164479.000000
s hg38.chr6_GL000254v2_alt  1499403  93 +   4827813 GATTATAAACCCAGATCAAAGTCCCCTTTATCCAGAAAGCATTCCCAGATGGACTTTATCCCATTCTGCA--------TTAATCTTTCTATCTACTCGACA
s panTro5.chr6             30368241  93 + 175400573 GATTATAAACCCAGATCAAAGTCCCCTTTATCCAGAAAGCATTCCCAGATGGACTTTATCCCATTCTGCA--------TTAATCTTTCTATCTACTCAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30602572  93 + 173848474 GATTATAAACCCAGATCAAAGTCCCCTTTATCCAGAAAGCATTCCCAGATGGACTTTATCCCATTCTGCA--------TTAATCTTTCTATCTACTCAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     310276 101 +   2037526 GATTATAAACCCAGATCAAAGTCCCCTTTATCCAGAAAGCATTCCCAGATGGACTTTATCCCATTCTGCATTTTCTGCTTAATCTTTCTATCTACTCAACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74976737  93 + 122973662 GATTATAAACCCAGATCAAAGTCCCCTTTATCCAGAAAGCATTCCCAGATGTACCTTATCCCATTCTGTG--------TTAATCTTTCTATCTACTCAACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30854938  93 + 172585720 GATTATAAACCCAGATCAAAGCCCCCTTTATGCAGAAAGCATTCCCAAATGGACCTTATCCCATTCTGTG--------TTAATCTTTCTATCTACTCAGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30144420  93 - 170955103 GATTATAAACCCAGATCAAAGCCCCCTTTATGCAGAAAGCATTCCCAAATGGACCTTATCCCATTCTGTG--------TTAATCTTTCTATCTACTCAGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     393639  93 +   1495729 GATTATAAACCCAGATCAAAGCCCCCTTTATGCAGAAAGCATTCCCAAATGGACCTTATCCCATTCTGTG--------TTAATCTTTCTATCTACTCAGCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     495343  93 -    863181 GATTATAAACCCAGATCAAAGTCCCCTTTATGCAGAAAGCATTCCCAAATGGACCTTATCCCATTCTGTG--------TGAATCTTTCTATCTACTCAGCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29643946  93 -  71996105 AATTATAAACCCAGATCAAAGTCCCCTTTATGCAGAAAGCATTCCCAAACGGACCTTATCCCATTCTGTG--------TTAATCTTTCTATCTACTCAGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     376776  93 -    735854 GATTATAAACCCAGATCAAAGTCCCCTTTATGCAGAAAGCATTCCCAAATGGACCTTATCCCATTCTGTG--------TGAATCTTTCTATCTACTCAGCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     282311  93 -   1829203 TGTTACAAACCCAGATCAAAGTCCCCTTTATCCAGAAAGCATTCCCAAATGGACCTTATCCCATTCTGTG--------TTAATCTTTCTATCTATTCAACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30481941  93 + 171630274 GGTTATAAACCCAGATCAAAGTTCCCTTTATCCAGAAAGCATTCCCAGATGGACCTTATCCTGTTCTGCA--------TTAATCTTTCTATCTACTCAACA
i calJac3.chr4             C 0 I 11
s saiBol1.JH378341           287983  93 +    515838 GGTTACAAACCCAGATCAAAGTTCCCTTTATCCAGAAAGCATTCCCAGATGGACCTTATCCCATTCTGCG--------TTAATCTTTCTATCTACTCAACA
i saiBol1.JH378341         C 0 I 11
s cebCap1.NW_016107755v1     917186  93 -   1771730 GGTTATAAGCCCAGATCAAACCTCCCTTTATCCAGAAAGCATTCCCAGATGGACCTTATCCCATTCTGCG--------TTAATCTTTCTATCTACTCAACA
i cebCap1.NW_016107755v1   C 0 I 23
s aotNan1.NW_018496901v1      98228  93 -    486031 GGTTATAAACCCAGATCAAAGTTCCCTTTATCCAGAAAGCATTCCCAGATGGACCTTATCCCATTCTGCG--------TTAATCTTTCTATCTACTCAACA
i aotNan1.NW_018496901v1   C 0 I 11
s proCoq1.NW_012149775v1     192462  91 -   1411461 GATTCTAAACCCAGATCAAAGTGCCCCTTATCCAGAAGCC--TCCCCGATGGACCTTATCCCATCCTGAT--------TTAATCGTTCTGTCCACCCAACA
i proCoq1.NW_012149775v1   I 13 C 0
s otoGar3.GL873550           333088  93 +  18854210 GATTTTAAATCCAGATTAAAGTTCCCCTTATCCAGAAAGCATTCCCTGACAGACTTCATCCCATTCCAGT--------TTAATCTTTCTATTCACCCAAGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26351759  90 +  26524999 -GAtctaatcgcagatcaaagttgcctcc-tccaggaagcccttcctgaTGGACCCTGACTTGTTCTG-A--------CAACACCTTCGCCCCGCCCATCA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               373741 925 + 123392446 I
e mm10.chr17               58111058 580 -  94987271 I
e dasNov3.JH567297            45707   0 +     53444 C

a score=74115.000000
s hg38.chr6_GL000254v2_alt  1499496  9 +   4827813 TGCGCAGAT---
s panTro5.chr6             30368334  9 + 175400573 TGTGCAGAT---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30602665  9 + 173848474 TGTGCAGAT---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     310377  9 +   2037526 TGCGCAGAT---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74976830  9 + 122973662 TGTGCAGAT---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30855031  9 + 172585720 TGTGCAGCT---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30144513  9 - 170955103 TGTGCAGCT---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     393732  9 +   1495729 TGTGCAGCT---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     495436  9 -    863181 TGTGCAGAT---
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29644039  9 -  71996105 TGTGTAGAT---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     376869  9 -    735854 TGTGCAGAT---
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     282404  9 -   1829203 TGTGCAGAT---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30482045  9 + 171630274 TGTGTGAAT---
i calJac3.chr4             I 11 I 3
s saiBol1.JH378341           288087  9 +    515838 TGCGTGAAT---
i saiBol1.JH378341         I 11 I 3
s aotNan1.NW_018496901v1      98332  9 -    486031 TGCATGAAT---
i aotNan1.NW_018496901v1   I 11 I 3
s proCoq1.NW_012149775v1     192553  9 -   1411461 CGCGCAGAT---
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           333181  9 +  18854210 TGCACAGAC---
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26351849 12 +  26524999 TGTGCACATGAT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               373741 925 + 123392446 I
e mm10.chr17               58111058 580 -  94987271 I
e dasNov3.JH567297            45707  0 +     53444 C
e cebCap1.NW_016107755v1     917279 23 -   1771730 I

a score=281807.000000
s hg38.chr6_GL000254v2_alt  1499505 22 +   4827813 CAGGATGTGAGCTTCATACCAC
s panTro5.chr6             30368343 22 + 175400573 CAGGATGTGAGCTTCATACCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30602674 22 + 173848474 CAGGATGTGAGCTTCATACCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     310386 22 +   2037526 CAGGATGTGAGCTTCATACCAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74976839 22 + 122973662 CAGGATGCGAGCTTCATACCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30855040 22 + 172585720 CAGGATGTGAGCTTTGTACCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30144522 22 - 170955103 CAGGATGTGAGCTTTGTACCAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     393741 22 +   1495729 CAGGATGTGAGCTTTGTACCAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     495445 22 -    863181 CAGGATGTGAGCTTTGTACCAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29644048 22 -  71996105 CAGGATGTGAGCTTTGTACCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     376878 22 -    735854 CAGGATGTGAGCTTTGTACCAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     282413 22 -   1829203 CAGGATGTGAGCTTCATACCAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30482057 22 + 171630274 CAGGATGTGAGCTTCATACCAC
i calJac3.chr4             I 3 C 0
s saiBol1.JH378341           288099 22 +    515838 CAAGATGTGAGCTTCACACCAC
i saiBol1.JH378341         I 3 C 0
s cebCap1.NW_016107755v1     917302 22 -   1771730 CAGGATGTGAGCTTCACACCAC
i cebCap1.NW_016107755v1   I 23 C 0
s aotNan1.NW_018496901v1      98344 22 -    486031 CAGGATGTGAGCTTCATAGTAC
i aotNan1.NW_018496901v1   I 3 C 0
s proCoq1.NW_012149775v1     192562 22 -   1411461 GAGGCTGTGCGCTTCGTACCAC
i proCoq1.NW_012149775v1   C 0 I 184
s otoGar3.GL873550           333190 22 +  18854210 CAGGATGTGAGCTTCATACCAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26351861 22 +  26524999 GGGGAGGAGGGCCTCTTGCCTG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               373741 925 + 123392446 I
e mm10.chr17               58111058 580 -  94987271 I
e dasNov3.JH567297            45707  0 +     53444 C

a score=176830.000000
s hg38.chr6_GL000254v2_alt  1499527 19 +   4827813 GAATGTAGTA------TGTGTATGT----
s panTro5.chr6             30368365 19 + 175400573 GAATGTAGTA------TGTGTATGT----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30602696 19 + 173848474 GAATGTAGTA------TGTGTATGT----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     310408 19 +   2037526 GAATGTAGTA------TGTGTATGT----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74976861 19 + 122973662 GAATGTAGTG------TATGTATGT----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30855062 19 + 172585720 GAATGTAGTA------TGTGTATGT----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30144544 19 - 170955103 GAATGTAGTA------TGTGTATGT----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     393763 19 +   1495729 GAATGTAGTA------TGTGTATGT----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     495467 19 -    863181 GAATGTAGTA------TGTGTATGT----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29644070 19 -  71996105 GAATGTAGTA------TGTGTATGT----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     376900 19 -    735854 GAATGTAGTA------TGTGTATGT----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     282435 19 -   1829203 AAATGTAGTA------TGTGTATGT----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30482079 19 + 171630274 TAATGTGGTA------TGTGTGTGT----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           288121 19 +    515838 TGACATTGTA------TGTGTGTGT----
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     917324 19 -   1771730 TAATGTGGTA------CGTGTGTGT----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      98366 19 -    486031 TAATGTGGTA------TGTGTGTGT----
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           333212 25 +  18854210 ACATGCTGTAGATGACTGTGCCTGT----
i otoGar3.GL873550         C 0 I 111
s canFam3.chr35            26351883 19 +  26524999 ----GTCAGG------TGTGTATGGGTGG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               373741 925 + 123392446 I
e mm10.chr17               58111058 580 -  94987271 I
e dasNov3.JH567297            45707  0 +     53444 C
e proCoq1.NW_012149775v1     192584 184 -   1411461 I

a score=515360.000000
s hg38.chr6_GL000254v2_alt  1499546 45 +   4827813 GCTTGTCCTTTCTTCATGTTTCTCCTGAGAGCCTTACAAACAATG
s panTro5.chr6             30368384 45 + 175400573 GCTTGTCCTTTCTTCATGCTTCTCCTGAGAGCCTTACAAACAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30602715 45 + 173848474 GCTTGTCCTTTCTTCATGCTTCTCCTGAGAGCCTTACAAACAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     310427 45 +   2037526 GCTTGTCCTTTCTTCATGTTTCTCCTGAGAGCCTTACAAACAATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74976880 45 + 122973662 GCTTGTCCTTTCTTCATGTTTCTCCTGAGAGCCTTACAAAGAATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30855081 45 + 172585720 GCTTGTCCTTTCTTCATGGTTCTCCTGAGAGCCTTACAAAGAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30144563 45 - 170955103 GCTTGTCCTTTCTTCATGGTTCTCCTGAGAGCCTTACAAAGAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     393782 45 +   1495729 GCTTGTCCTTTCTTCATGGTTCTCCTGAGAGCCTTACAAAGAATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     495486 45 -    863181 GCTTGTCCTTTCTTCATGGTTCTCCTGAGAGCCTTACAAAGAATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29644089 45 -  71996105 GCTTGTCCTTTCTTCATGGTTCTCCTGAGAGCCTTACAAAGAATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     376919 45 -    735854 GCTTGTCCTTTCTTCATGGTTCTCCTGAGAGCCTTACAAAGAATG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     282454 45 -   1829203 GCTTGTCCTTTCTTCATGGTTCTCCTGAGAGCCTTACAAAGAATG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30482098 45 + 171630274 GCTTGTCCTTTCTTCATGGTTCTCCTGAGAACCTTACAAAGAATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           288140 45 +    515838 GCTTGTCCTTTCTTCATGGTTCTCCTGAGAACCTTACAAAGAATG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     917343 45 -   1771730 GCTTGTCCTTTCTTCATGGTTCTCCTGAGAACCTTACAAAGAATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      98385 45 -    486031 GCTTGTCCTTTCTTCATGGTTCTCCTGAGAACCTTACAAAGAATG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           333348 45 +  18854210 GCCTGTCCCTTCTTCATGGTTCTCCTGAGTGCCTTGCAAAGGCAG
i otoGar3.GL873550         I 111 C 0
s canFam3.chr35            26351902  5 +  26524999 ----------------------------------------GGATG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               373741 925 + 123392446 I
e mm10.chr17               58111058 580 -  94987271 I
e dasNov3.JH567297            45707  0 +     53444 C
e proCoq1.NW_012149775v1     192584 184 -   1411461 I

a score=168790.000000
s hg38.chr6_GL000254v2_alt  1499591 18 +   4827813 TGacacacacacacacac
s panTro5.chr6             30368429 18 + 175400573 TGacacacacacacacac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30602760 18 + 173848474 TGacacacacacacacac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     310472 18 +   2037526 TGacacacacacacacac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74976925 18 + 122973662 TGacacacacacatacac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30855126 18 + 172585720 TGacacacacccacacat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30144608 18 - 170955103 TGacacacacccacacat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     393827 18 +   1495729 TGacacacacccacacat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     495531 18 -    863181 TGacacacacccacacat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29644134 18 -  71996105 TGacacacacccacacat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     376964 18 -    735854 TGacacacacccacacat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     282499 18 -   1829203 TGacacacacccacacat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30482143 18 + 171630274 TGacaaacacacacacat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           288185 18 +    515838 TGATAAacacacacacac
i saiBol1.JH378341         C 0 I 153
s cebCap1.NW_016107755v1     917388 18 -   1771730 TGACAAACACACACACAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      98430 18 -    486031 TGacaaacacacacacac
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           333393 15 +  18854210 TGacataggtataca---
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58111638 18 -  94987271 tgatataggtatgtatat
i mm10.chr17               I 580 C 0
s canFam3.chr35            26351907  6 +  26524999 --ACACAG----------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               373741 925 + 123392446 I
e dasNov3.JH567297            45707  0 +     53444 C
e proCoq1.NW_012149775v1     192584 184 -   1411461 I

a score=10424.000000
s hg38.chr6_GL000254v2_alt  1499609 1 +   4827813 a
s panTro5.chr6             30368447 1 + 175400573 a
i panTro5.chr6             C 0 I 5
s panPan2.chr6             30602778 1 + 173848474 a
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01015528v1     310490 1 +   2037526 g
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74976943 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30855144 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30144626 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     393845 1 +   1495729 a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     495549 1 -    863181 a
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29644152 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     376982 1 -    735854 a
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     282517 1 -   1829203 a
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30482161 1 + 171630274 a
i calJac3.chr4             C 0 I 31
s cebCap1.NW_016107755v1     917406 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 I 213
s aotNan1.NW_018496901v1      98448 1 -    486031 a
i aotNan1.NW_018496901v1   C 0 I 238
s mm10.chr17               58111656 1 -  94987271 a
i mm10.chr17               C 0 I 1
s canFam3.chr35            26351913 1 +  26524999 A
i canFam3.chr35            C 0 C 0
e micMur3.chr6               373741 925 + 123392446 I
e dasNov3.JH567297            45707 0 +     53444 C
e proCoq1.NW_012149775v1     192584 184 -   1411461 I
e saiBol1.JH378341           288203 153 +    515838 I
e otoGar3.GL873550           333408 0 +  18854210 C

a score=-7467.000000
s hg38.chr6_GL000254v2_alt  1499610 3 +   4827813 acc--
s panTro5.chr6             30368453 3 + 175400573 atg--
i panTro5.chr6             I 5 C 0
s panPan2.chr6             30602780 3 + 173848474 atg--
i panPan2.chr6             I 1 C 0
s calJac3.chr4             30482193 1 + 171630274 a----
i calJac3.chr4             I 31 C 0
s otoGar3.GL873550           333408 1 +  18854210 -c---
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58111658 1 -  94987271 --g--
i mm10.chr17               I 1 I 2
s canFam3.chr35            26351914 3 +  26524999 --GCC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               373741 925 + 123392446 I
e dasNov3.JH567297            45707 0 +     53444 C
e proCoq1.NW_012149775v1     192584 184 -   1411461 I
e saiBol1.JH378341           288203 153 +    515838 I
e aotNan1.NW_018496901v1      98449 238 -    486031 I
e cebCap1.NW_016107755v1     917407 213 -   1771730 I
e colAng1.NW_012115577v1     282518 0 -   1829203 C
e manLeu1.NW_012107142v1     376983 0 -    735854 C
e chlSab2.chr17            29644153 0 -  71996105 C
e cerAty1.NW_012002535v1     495550 0 -    863181 C
e macNem1.NW_012012100v1     393846 0 +   1495729 C
e macFas5.chr4             30144627 0 - 170955103 C
e rheMac8.chr4             30855145 0 + 172585720 C
e nomLeu3.chr1a            74976944 0 + 122973662 C
e gorGor5.CYUI01015528v1     310491 0 +   2037526 C

a score=1911.000000
s hg38.chr6_GL000254v2_alt  1499613 1 +   4827813 t
s panTro5.chr6             30368456 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30602783 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     310491 1 +   2037526 t
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30482194 1 + 171630274 t
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           288356 1 +    515838 t
i saiBol1.JH378341         I 153 C 0
s canFam3.chr35            26351917 1 +  26524999 T
i canFam3.chr35            C 0 C 0
e micMur3.chr6               373741 925 + 123392446 I
e mm10.chr17               58111659 2 -  94987271 I
e dasNov3.JH567297            45707 0 +     53444 C
e proCoq1.NW_012149775v1     192584 184 -   1411461 I
e otoGar3.GL873550           333409 0 +  18854210 C
e aotNan1.NW_018496901v1      98449 238 -    486031 I
e cebCap1.NW_016107755v1     917407 213 -   1771730 I
e colAng1.NW_012115577v1     282518 0 -   1829203 C
e manLeu1.NW_012107142v1     376983 0 -    735854 C
e chlSab2.chr17            29644153 0 -  71996105 C
e cerAty1.NW_012002535v1     495550 0 -    863181 C
e macNem1.NW_012012100v1     393846 0 +   1495729 C
e macFas5.chr4             30144627 0 - 170955103 C
e rheMac8.chr4             30855145 0 + 172585720 C
e nomLeu3.chr1a            74976944 0 + 122973662 C

a score=554984.000000
s hg38.chr6_GL000254v2_alt  1499614  94 +   4827813 atatatacacacatgtattatatacacacac-------------------------------------------------------------------------------ata--tgtgtatatata------------------atatatatgatgtgtatatg--tatCCATGGGTGTTTGT-TATGACTATTG
s panTro5.chr6             30368457  92 + 175400573 atatatacacacatgtattatatacacaca---------------------------------------------------------------------------------ta--tgtgtatatata------------------acatatatgatgtgtatatg--tatCCATGGGTGTTTGT-TATGACTATTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30602784  94 + 173848474 atatatacacacatgtattatatacacacac-------------------------------------------------------------------------------ata--tgtgtgtatata------------------atatatatgatgtgtatatg--tatCCATGGGTGTTTGT-TATGACTATTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     310492  94 +   2037526 atatatacacacatgtattatatacacacac-------------------------------------------------------------------------------ata--tgtgtatatata------------------atatatatgatgtatatatg--tatCCATGGGTGTTTGT-TATGACTATTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74976944  89 + 122973662 -------cacatacgtattatatacacacac-------------------------------------------------------------------------------atatgtgtgtgtatata------------------atatatatgatgtgtatatg--tatgcatgggtgtttgt-tatgACTATTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30855145  91 + 172585720 ---tatacacacacGTATTCTATACAAGCAC-------------------------------------------------------------------------------ATA--TGTGCATATATA------------------ATATATATGATGTGCATATG--TATGCATGAGTGTATAT-TATGACTGTTG
i rheMac8.chr4             C 0 I 14
s macFas5.chr4             30144627  91 - 170955103 ---tatacacacacGTATTCTATACAAGCAC-------------------------------------------------------------------------------ATA--TGTGCATATATA------------------ATATCTATGATGTGCATATG--TATGCATGGGTGTATAT-TATGACTATTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     393846  91 +   1495729 ---tatacacacacGTATTCTATACAAGCAC-------------------------------------------------------------------------------ATA--TGTGCATATATA------------------ATATATATGATGTGCATATG--TATGCATGGGTGTATAT-TATGACTGTTG
i macNem1.NW_012012100v1   C 0 I 14
s cerAty1.NW_012002535v1     495550  91 -    863181 ---tatacacacacGTATTCTATACAAGCAC-------------------------------------------------------------------------------ATA--TGTGCATATATA------------------ATATATATGATGTGCATATG--TATGCATGGGTGTATAT-TATGACTATTG
i cerAty1.NW_012002535v1   C 0 I 14
s chlSab2.chr17            29644153  91 -  71996105 ---tatacacacacGTATTCTATACAAGCAC-------------------------------------------------------------------------------ATA--TGTGCATATATA------------------ATATATATGATGTGCATATG--TATGCATGGGTGTATAT-TATGACTATTG
i chlSab2.chr17            C 0 I 14
s manLeu1.NW_012107142v1     376983  91 -    735854 ---tatacacacacGTATTCTATACAAGCAC-------------------------------------------------------------------------------ATA--TGTGCATATATA------------------ATATATATGATGTGCATATG--TATGCATGGGTGTATAT-TATGACTATTG
i manLeu1.NW_012107142v1   C 0 I 14
s colAng1.NW_012115577v1     282518  91 -   1829203 ---tatacacacatgtattctatgcaagcac-------------------------------------------------------------------------------ata--tgtgtttattta------------------atatatatgatatgcatatg--tatgcatgggtgtatAT-TATGACTATTG
i colAng1.NW_012115577v1   C 0 I 14
s calJac3.chr4             30482195 193 + 171630274 atgtatacacacatgtaTTCTATACCCACACTGGGGTTTATCCGGTGAGTTCTGCCATTCATAGGAGAACTGAGCCTGCTGGACCCTCAGACAAGAatatttatatgtacata--tgtgtatatatacatttatgcgtatgtactgtacacatgatgtgtatgaggatatgtatgtatgtatgc-tatgACTATTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           288357 113 +    515838 atatatatatatatata-tatatacacacac-----------------------------------------------------------------------------acaca--tatgtatatatacagttatgcatatatactatacatatgatgtgtatatg--tatgagtatatgtatGT-TATGACTATTG
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           333409  76 +  18854210 ---tata-----------tgtatacagacac-------------------------------------------------------------------------------ata--tgtatatatatg------------------g-----atgatgcatataca--cacgcatgtgtgtacatatatgaatatTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58111661  61 -  94987271 --------------------tatatacacaa-------------------------------------------------------------------------------gta--tg------tatg------------------ctacatgtcatgtgggtgta--tgta-atatgtg------tgtgaatgtt-
i mm10.chr17               I 2 C 0
e micMur3.chr6               373741 925 + 123392446 I
e dasNov3.JH567297            45707   0 +     53444 C
e proCoq1.NW_012149775v1     192584 184 -   1411461 I
e canFam3.chr35            26351918   0 +  26524999 C
e aotNan1.NW_018496901v1      98449 238 -    486031 I
e cebCap1.NW_016107755v1     917407 213 -   1771730 I

a score=6685.000000
s hg38.chr6_GL000254v2_alt  1499708 16 +   4827813 --TCATAGTCATAACATA
s panTro5.chr6             30368549  9 + 175400573 --TAGTGCTCA-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30602878  9 + 173848474 --TAGTGCTCA-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     310586 16 +   2037526 --TCATGGTCATAACATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74977033  9 + 122973662 --TAGTGCCCA-------
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30144718  9 - 170955103 --TAGTGCCCA-------
i macFas5.chr4             C 0 C 0
s calJac3.chr4             30482388  9 + 171630274 --TAGTGCCCA-------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           288470  9 +    515838 --TAGTAGCCA-------
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           333485  9 +  18854210 --TGGTGCCCA-------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58111722 11 -  94987271 taacatactCT-------
i mm10.chr17               C 0 C 0
e micMur3.chr6               373741 925 + 123392446 I
e dasNov3.JH567297            45707  0 +     53444 C
e proCoq1.NW_012149775v1     192584 184 -   1411461 I
e canFam3.chr35            26351918  0 +  26524999 C
e aotNan1.NW_018496901v1      98449 238 -    486031 I
e cebCap1.NW_016107755v1     917407 213 -   1771730 I
e colAng1.NW_012115577v1     282609 14 -   1829203 I
e manLeu1.NW_012107142v1     377074 14 -    735854 I
e chlSab2.chr17            29644244 14 -  71996105 I
e cerAty1.NW_012002535v1     495641 14 -    863181 I
e macNem1.NW_012012100v1     393937 14 +   1495729 I
e rheMac8.chr4             30855236 14 + 172585720 I

a score=-15560.000000
s hg38.chr6_GL000254v2_alt  1499724 11 +   4827813 --------GTCATAGTGCA
s panTro5.chr6             30368558  6 + 175400573 --------GT-ATAG----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30602887  6 + 173848474 --------GT-ATAG----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     310602 11 +   2037526 --------GTCATAGTGCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74977042  6 + 122973662 --------GT-ATAG----
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30144727  5 - 170955103 --------G--ATAG----
i macFas5.chr4             C 0 C 0
s calJac3.chr4             30482397  6 + 171630274 --------AT-ATAG----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           288479  6 +    515838 --------AT-ATAG----
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           333494  5 +  18854210 --------GT-GCA-----
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58111733  3 -  94987271 --------GC-A-------
i mm10.chr17               C 0 I 1
s canFam3.chr35            26351918 10 +  26524999 GCCCCAGAGC---------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               373741 925 + 123392446 I
e dasNov3.JH567297            45707  0 +     53444 C
e proCoq1.NW_012149775v1     192584 184 -   1411461 I
e aotNan1.NW_018496901v1      98449 238 -    486031 I
e cebCap1.NW_016107755v1     917407 213 -   1771730 I
e colAng1.NW_012115577v1     282609 14 -   1829203 I
e manLeu1.NW_012107142v1     377074 14 -    735854 I
e chlSab2.chr17            29644244 14 -  71996105 I
e cerAty1.NW_012002535v1     495641 14 -    863181 I
e macNem1.NW_012012100v1     393937 14 +   1495729 I
e rheMac8.chr4             30855236 14 + 172585720 I

a score=451471.000000
s hg38.chr6_GL000254v2_alt  1499735 41 +   4827813 AATCCTGCAAAATTTTCTCTCCTTTCCGAGGACTTC---TCATT
s panTro5.chr6             30368564 41 + 175400573 AATCCTGCAAAATTGCCTCTCCTTTCCGAGGACTTC---TCATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30602893 41 + 173848474 AATCCTGCAAAATTGCCTCTCCTTTCCGAGGACTTC---TTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     310613 41 +   2037526 AATCCTGCAAAATTTTCTCTCCTTTCCAAGGACTTC---TCATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74977048 41 + 122973662 AATCCTGCAAAATTGTCTCTCCTTTCCAAGGACTTC---TCCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30855250 41 + 172585720 AATCCTGCAAAATTGTCTCTCCTTTTCAAGGACTTC---TCATT
i rheMac8.chr4             I 14 C 0
s macFas5.chr4             30144732 41 - 170955103 AATCCTGCAAAATTGTCTCTCCTTTTCAAGGACTTC---TCATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     393951 41 +   1495729 AATCCTGCAAAATTGTCTCTCCTTTTCAAGGACTTC---TCATT
i macNem1.NW_012012100v1   I 14 C 0
s cerAty1.NW_012002535v1     495655 41 -    863181 AATCCTGCAAAATTGTCTCTCCTTTTCAAGGACTTC---TCATT
i cerAty1.NW_012002535v1   I 14 C 0
s chlSab2.chr17            29644258 41 -  71996105 AATCCTGCAAAATTGTCTCTCCTTTTCAAGGACTTC---TCATT
i chlSab2.chr17            I 14 C 0
s manLeu1.NW_012107142v1     377088 41 -    735854 AATCCTGCAAAATTGTCTCTCCTTTTCAAGGACTTC---TCATT
i manLeu1.NW_012107142v1   I 14 C 0
s colAng1.NW_012115577v1     282623 41 -   1829203 AATCCTGCAAAATTTTCTCTCCTTTTCACGGACTTC---TCATT
i colAng1.NW_012115577v1   I 14 C 0
s calJac3.chr4             30482403 41 + 171630274 AATTCTGCAAAATGGTCTCTCCTTTTTGAGGACTTC---TCATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           288485 41 +    515838 AATCATGCAAAATTGTCTCTCCTTTCCAAAGACTTC---TCATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     917620 41 -   1771730 AATCCTACAAAATTGTCTCTCCTTTTCGAAGACTTC---TCATT
i cebCap1.NW_016107755v1   I 213 C 0
s aotNan1.NW_018496901v1      98687 41 -    486031 AATCCTGCAAAATTGTCTCTCCTTTTCAAAGACTTC---TCATT
i aotNan1.NW_018496901v1   I 238 C 0
s otoGar3.GL873550           333500 41 +  18854210 AACCCTGCGTAACTGTCTCTCCTTTTCAGGAATTCA---TCACT
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58111737 43 -  94987271 AACTCAGAAACATGGT-TTTCCTTACTCAGAACTTTAAAAAATT
i mm10.chr17               I 1 C 0
s canFam3.chr35            26351928 24 +  26524999 ---CCTGAGAAGTTT--------------GGATTTC---TTGCT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               373741 925 + 123392446 I
e dasNov3.JH567297            45707  0 +     53444 C
e proCoq1.NW_012149775v1     192584 184 -   1411461 I

a score=228062.000000
s hg38.chr6_GL000254v2_alt  1499776 16 +   4827813 CTCTCCCATCCTGACA
s panTro5.chr6             30368605 16 + 175400573 CTCTCCCATCCTGACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30602934 16 + 173848474 CTCTCCCATCCTGACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     310654 16 +   2037526 CCCTCCCATCCTGACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74977089 16 + 122973662 CTCTCCCATCCTGACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30855291 16 + 172585720 CTCTCCCATCCTGACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30144773 16 - 170955103 CTCTCCCATCCTGACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     393992 16 +   1495729 CTCTCCCATCCTGACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     495696 16 -    863181 CTCTCCCATCCTGACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29644299 16 -  71996105 CTCTCCCATCCTGACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     377129 16 -    735854 CTCTCCCATCCTGACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     282664 16 -   1829203 CTCTCCTATCCTGACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30482444 16 + 171630274 CTCTCCCATTCTGACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           288526 16 +    515838 CTCTCCCATTCTGACA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     917661 16 -   1771730 CTCTCCCATTCTGACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      98728 16 -    486031 CTCTCCCACTCTGACA
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               374666 16 + 123392446 CTCCCCCATCCTGGTG
i micMur3.chr6             I 925 C 0
s otoGar3.GL873550           333541 16 +  18854210 CTCTCTCATCCTGATG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58111780 16 -  94987271 CCCCCCATTCCTAATG
i mm10.chr17               C 0 I 1
s canFam3.chr35            26351952 16 +  26524999 CCCGCGCACCCTGGCA
i canFam3.chr35            C 0 C 0
e dasNov3.JH567297            45707  0 +     53444 C
e proCoq1.NW_012149775v1     192584 184 -   1411461 I

a score=918827.000000
s hg38.chr6_GL000254v2_alt  1499792 54 +   4827813 TAGGC-TCCTTACCTGGCTCATAGTCCAACTCAAAGCATAGTTTTTCTGTAAAGA
s panTro5.chr6             30368621 54 + 175400573 CAGGC-TGCTTACCTGGCTCATAGTCCAACTCAAAGCATAGTTTTTCTGTAAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30602950 54 + 173848474 CAGGC-TGCTTACCTGGCTCATAGTCCAACTCAAAGCATAGTTTTTCTGTAAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     310670 54 +   2037526 TAGGC-TCCTTACCTGGCTCATAGTCCAACTCAAAGCATAGTTTTTCTGTAAAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74977105 54 + 122973662 TAGGC-TGCTTACCTGGCTCGTAGTCCAACTCAAAGCATAGTTTTTCTGTAAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30855307 54 + 172585720 TAGGC-TGCTTACCTGGCTCATAGTCCAACTCAAAGTGTAGTTTTTCTGTAAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30144789 54 - 170955103 TAGGC-TGCTTACCTGGCTCATAGTCCAACTCAAAGTGTAGTTTTTCTGTAAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     394008 54 +   1495729 TAGGC-TGCTTACCTGGCTCATAGTCCAACTCAAAGTGTAGTTTTTCTGTAAAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     495712 54 -    863181 TAGGC-TGCTTACCTGGCTCATAGTCCAACTCAAAGTGTAGTTTTTCTGTAAAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29644315 54 -  71996105 TAGGC-TGCTTACCTGGCTCATAGTCCAACTCAAAGTGTAGTTTTTCTGTAAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     377145 54 -    735854 TAGGC-TGCTTACCTGGCTCATAGTCCAACTCAAAGTGTAGTTTTTCTGTAAAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     282680 54 -   1829203 TAGGC-TGCTTACCTGGCTCATAGTCCAACTCAAAGTGTAGTTTTTCTGTAAAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30482460 54 + 171630274 TAGGC-TGCTTACCTGGCTCATAGTCCAACTCAAAGCATAGTTTTTCTGTAAAGA
i calJac3.chr4             C 0 I 2
s saiBol1.JH378341           288542 54 +    515838 TGGGC-TGCTCACCTGGCTCATAGTCCAACTCAAAACATAGTTTTTCTGTAAAGA
i saiBol1.JH378341         C 0 I 2
s cebCap1.NW_016107755v1     917677 54 -   1771730 TAGGC-TGCTTACCTGGCTCATAGTCAAACTCACAGCATAGTTTTTCTGTAAAGA
i cebCap1.NW_016107755v1   C 0 I 2
s aotNan1.NW_018496901v1      98744 54 -    486031 TAGGC-TGCTTACCTGGCTCATATTCCAACTCAAAGCATAGTTTTTCTGTAAAGA
i aotNan1.NW_018496901v1   C 0 I 2
s micMur3.chr6               374682 54 + 123392446 TAGGC-TGCTTACCTGGCTCATAGTCCAGCGCAAAGCAGAGTTTTTCTGCAAAGA
i micMur3.chr6             C 0 I 389
s proCoq1.NW_012149775v1     192768 54 -   1411461 TAGGC-TGCTCACCTGGCTCATAGTCCAGCTCAAAGCAGAGCTTTTCTGCAAAGG
i proCoq1.NW_012149775v1   I 184 I 2
s otoGar3.GL873550           333557 53 +  18854210 -TAGC-TGCTTACCCGGCTCATAGTCCAACTCAAAACGGAGTTTTTCTGTAAAGA
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               58111797 54 -  94987271 AGGGT-GGCTTACCTGGCTCATAGTCCAACTCAAAACAGAGTTTTTCTGTGAGGA
i mm10.chr17               I 1 I 2
s canFam3.chr35            26351968 55 +  26524999 TAGGTAGGCTCACCTGGCTCATAGTCCAGCTCGAAGCAGAGTTTCTCTGTAAAGA
i canFam3.chr35            C 0 C 0
e dasNov3.JH567297            45707  0 +     53444 C

a score=2389686.000000
s hg38.chr6_GL000254v2_alt  1499846 208 +   4827813 --AAATAA-ACCAGGATGAGATTTTATTAGTCTTACAAAACCATCAGACAC-TTAATGATGAGAAAACTGAGGCCAAGAAGAGGGAAGGGACAAGAAGAAGAATGTAAGCTGGAATCCTCTAGACCAGTGGTTCCA------A----GCTTGCATCA--------GAATCATCTGGAGCtct--tgttaaaacacatctgtttcagattcaggtgctctggggtggagctga
s panTro5.chr6             30368675 206 + 175400573 --AAATAA-ACCAGGATGAGATTTTATTAGTCTTACAAAACCATCAGACAC-TTAATGATGAGAAAACTGAGGCCAAGAAGAGGGAAGGGACAAGAAGAAGAATGGAAGCTGGAATCCTCTAGACcagtggttcca------a----gcttgcatca--------gaatcatctggagcgct--tgttaaaacacat--gtttcagattcaggtgctctggggtggagctga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30603004 206 + 173848474 --AAATAA-ACCAGGATGAGATTTTATTAGTCTTACAAAACCATCAGACAC-TTAATGATGAGAAAACTGAGGCCAAGAAGAGGGAAGGGACAAGAAGAAGAATGGAAGCTGGAATCCTCTAGACcagtggttcca------a----gcttgcatca--------gaatcatctggagcgct--tgttaaaacacat--gtttcagattcaggtgctctggggtggagctga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     310724 208 +   2037526 --AAATAA-ACCAGGATGAGATTTTATTAGTCTTACAAAACCATCAGACAC-TTAATGATGAGAAAACTGAGGCCAAGAAGAGGGAAGGGACAAGAAGAAGAATGTAAGCTGGAATCCTCTAGACcagtggttcca------a----gcttgcatca--------gaatcatctggagctct--tgttaaaacacatctgtttcagattcaggtgctctggggtggagctga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74977159 208 + 122973662 --AGATAA-ACCAGGATGAGATTTTATTAGTCTTACAAAACCATCAGACAC-TTAATGATGAGAAAACTGAGGCCAAGAAGAGGGAAGGGACAAGAAGAAGAATGGAAGCTGGAATCCTCTAGACcagtggttcca------a----gcttgcatca--------aaatcccctggagctct--tgctacaacacatctgtttcagattcaggtgccctggggtggagctga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30855361 210 + 172585720 --AAATAA-ACCAGGATGAGATTTTATTAGTTTTACAAAACCATCAGACAC-TTAATGACGAGGAAACTGAGGCCCAGAAGAGGGAAGCGACAACAAGAAGAATGGAAGCTGGAATCCTCTAGGCcagtggttcca------a----gcttgcatca--------gaatcatctggagcacttttgctaaaacacgcctgtttcagattcaggtgctctggggtgaagctga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30144843 210 - 170955103 --AAATAA-ACCAGGATGAGATTTTATTAGTTTTACAAAACTATCAGACAC-TTAATGACGAGGAAACTGAGGCCCAGAAGAGGGAAGCGACAACAAGAAGAATGGAAGCTGGAATCCTCTAGGCcagtggttcca------a----gcttgcatca--------gaatcatctggagcacttttgctaaaacacgcctgtttcagattcaggtgctctggggtgaagctga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     394062 210 +   1495729 --AAATAA-ACCAGGATGAGATTTTATTAGTTTTACAAAACTATCAGACAC-TTAATGACGAGGAAACTGAGGCCCAGAAGAGGGAAGCGACAACAAGAAGAATGGAAGCTGGAATCCTCTAGGCcagtggttcca------a----gcttgcatca--------gaatcatctggagcacttctgctaaaacacgcctgtttcagattcaggtgctctggggtgaagctga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     495766 210 -    863181 --AAATAA-ACCAGGATGAGATTTTATTAGTTTTACAAAACCATCAGACAC-TTAATGACGAGGAAACTGAGGCCCAGAAGAGGGAAGCGACAACAAGAAGAATGGAAGCTGGAATCCTCTAGGCcagtggttcca------a----gcttgcatca--------gaatcatctggagcacttttgctaaaacacgcctgtttcagattcaggtgctctggggtgaagctga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29644369 210 -  71996105 --AAATAA-ACCAGGATGAGATTTTATTAGTCTTACAAAACCATCAGACAC-TTAATGATGAGGAAACTGAGGCCCAGAAGAGGGGAGGGACAACAAGAAGAATGGAAGCTGGAATCCTCTAGGCcagtggttcca------a----gcttgcatca--------gaatcatctggagcgcttttgctaaaacacgcctgtttcagattcaggtgctctggggtgaagctga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     377199 210 -    735854 --AAATAA-ACCAGGATGAGATTTTATTAGTTTTACAAAACCATCAGACAC-TTAATGACGAGGAAACTGAGGCCCAGAAGAGGGAAGCGACAACAAGAAGAATGGAAGCTGGAATCCTCTAGGCcagtggttcca------a----gcttgcatca--------gaatcatctggagcacttttgctaaaacacgcctgtttcagattcaggtgctctggggtgaagctga
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     282734 204 -   1829203 --AAATAA-ACCATGATGAGATTTTATTAGTCTTACAAAACCATCAGACAC-TTAATGATGAGGAAACTGAGGCCCAGAAGAGGGAAGGGACAACAAGAAT------GGCTGGAATCCTCTAGGCcagtggttcca------a----gcttgcatca--------gaatcatctggagcgcttttgctaaaacacagctgtttcagattcaggtgctctggggtgaagctga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30482516 202 + 171630274 --AAATAA-AACAGGATGATATTTTATTAGTCTTACAAAACCATCAGAcac-ttaacaatgagaaaactgaggcccagaggagggaagggacAAGAAGAAT----GAAGCTGGAATCCTCTAGACCAGT--TTCCA------a----gcttgcatca--------gaatcacctggagcact--tgcgaaaacacacctgtttcagattcagatgctctggagtggggctga
i calJac3.chr4             I 2 C 0
s saiBol1.JH378341           288598 203 +    515838 --AAATAA-AACAGGATGATATTTTATTAGTCTTACTAAACCATCAGAcac-ttaataatgagaaaactgaggcccagaagagggaagggacAAGAAG-AC----GAAGCTGGAATCCTCTAGACcagtggttcca------a----gcttgcatca--------gaatcacctggagcact--tgctaaaacacacctgtttcagattcaggtgctctggggcggggctga
i saiBol1.JH378341         I 2 C 0
s cebCap1.NW_016107755v1     917733 204 -   1771730 --AAATAA-AACAGGATGATATTTTATTAGTCTTACAAAACCATCAGAcac-ttaacgatgagaaaactgaggcccagaagagggaagggacAAGAAGAAT----AAAGCTGGAATCCTCTAGACcagtggttcca------a----gctcgcatca--------gaatcacctggagcact--tgctaaaacacacctgtttcagattcaggtgctctggggtggggctga
i cebCap1.NW_016107755v1   I 2 C 0
s aotNan1.NW_018496901v1      98800 204 -    486031 --AAATAA-AACAGGATGATATTTTATTAGTCTTACAAAACCATCAGACAC-TTAACGATGAGAAAACTGAGGCCCAGAAGAGGGAAGGGACAAGAAGAAT----GAAGCTGGAATCCTCTAGACcagtggttcca------a----gcttgcatca--------gaatcacctggagcact--tgctaaaacacacctgtttcagattcaggtgctctggggtggggctga
i aotNan1.NW_018496901v1   I 2 C 0
s proCoq1.NW_012149775v1     192824 211 -   1411461 --AAACAA-AACAGGATGAGATTTCATTAGTCTCACGAAACCACAGGACAC-TTAGTGCTGAGGACACTGAGGCCCAGAGGAG-GGAGGAACAGAGAAGCG--TGGAAGCCAGAACCCTCTAGAAcagtggttccaacctgga----gtttgcctca--------gcaccacccagagcgct--tgctaagacacacctgtttcagagtcaggtgctctggggtggggctga
i proCoq1.NW_012149775v1   I 2 N 0
s otoGar3.GL873550           333612 108 +  18854210 --AAATAA-AATAGGATGACATTTCATTAGTCTCACAAAACTACAGAACtt-ttagtgatgaggaaactgaggcacataagagaggAGGAACAAAAAGA---------------------------------------------------------------------------------------------------------------Aggtg---------ggggctga
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               58111853 186 -  94987271 --AAATAATGACAAGATGAGATTTCATTGGTCT--CAAAACCGCAGAACACATCAGCGACGAG-----------------GATGGAAGGAACAGAGAGAAGAATGGAGG-TGGAATCCTCTAGACCAGCGCTTCTA------AGTTTGCTTGCATCC--------AAACATCTTAGAGCACT--TACTGTGA--------TTTCAAATCCAGACACCCTGGGGCAGGGCTGC
i mm10.chr17               I 2 I 4
s canFam3.chr35            26352023 191 +  26524999 GGATACAG-AAAAGGATGAGACCTCCTCAGTCTTACAAAACGAAAAAACCT-TTACTGATGAGAAAACTGATCCCTT---GAGGGAAGGGACGGAGAGGGC----AGAGCCAG-GCCCTCCAGA-CAGGGGTTCTGGGCTTGA----GCTTGTATCACTGTCCTGGGAACACCTGCAACACT----------CATGTCTGCTTCAG---TGGCTGCCGT-------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               374736 389 + 123392446 I
e dasNov3.JH567297            45707   0 +     53444 C

a score=841798.000000
s hg38.chr6_GL000254v2_alt  1500054 92 +   4827813 acatctgtatttctaacaatttcctgggcaatgcagctg--ctgctgct-ggtgggagcc-----------ccactGCCCTAGCCCTGATCAAAcagggaccatga
s panTro5.chr6             30368881 92 + 175400573 acatctgtatttctaacaagttcctgggcaatgcagctg--ctgctgct-gatgggagcc-----------ccactGCCCTagccctgagcaaacagggaccatgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30603210 92 + 173848474 acatctgtatttctaacaagttcctgggcaatgcagctg--ctgctgct-gatgggagcc-----------ccactGCCCTagccctgagcaaacagggaccatgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     310932 92 +   2037526 acatctgtatttctaacaatttcctgggcaatgcagctg--ctgctgct-ggtgggagcc-----------ccactGCCCTagccctgagcaaacagggaccatgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74977367 92 + 122973662 acatctgtatttctaacaagttcctgggcaatgctgctg--ctgctgct-ggtgggagcc-----------ccactGCCCTagccctgagcaaacagggaccatgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30855571 86 + 172585720 acatctgtatttgtaacaagttcctgggcaatgctgctg--ctgc-------tcggaacc-----------ccactGCCCCagccctgagcaaacagggaccatgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30145053 86 - 170955103 acatctgtatttgtaacaagttcctgggcaatgctgctg--ctgc-------tggGAGcc-----------ccactgccctagccctgagcaaacagggaccatgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     394272 86 +   1495729 acatctgtatttgtaacaagttcctgggcaatgctgctg--ctgc-------tggGAGcc-----------ccactgccctagccctgagcaaacagggccctttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     495976 86 -    863181 acatctgtatttgtaacaagttcctgggcaatgctgctg--ctgc-------tggGAGCC-----------CCACTGCCCTAGCCCTGAGCAAACAGGGACCATGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29644579 86 -  71996105 acatctgtatttgtaacaagttcctgggcaatgctgctg--ctac-------tggGAGcc-----------ccactgccccagccctgagcaaacagggaccaggt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     377409 86 -    735854 acatctgtatttgtaacaagttcctgggcaatgctgctg--ctgc-------tggGAGcc-----------ccactgccctagccctgagcaaacagggaccatgt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     282938 86 -   1829203 acatctgtatttgtgacaagttcctgggcaatgctgctg--ctgc-------tggGAGcc-----------ccactgccccagccctgagcaaacagggaccatgt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30482718 92 + 171630274 acatctgtatttctaacaagctcctgggtgatgctgctg--ctgctgCT-GATGGGAGCC-----------CCATTGCCCTAGcttgaaacaagcagggatcgtgt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           288801 92 +    515838 acgtctgtatttctaactagctcctgagcgatgctgctg--ctgctgCT-GATGGAAGcc-----------ccattgccctagctcgaagcaagcagggtccatgt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     917937 92 -   1771730 acatctgcatttctaacaagctcctgggaaatgctgctg--ctgctgCT-GATGGGAGcc-----------ccattgccctagctcgaagcaagcagggaccgtgt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      99004 92 -    486031 acatctgtatttctaacaagctcctgggcgatgctgctg--ctgctgCT-GATGGGAGCC-----------CCATTGCCCTagctcgaagcaagcagggatcgtgt
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           333720 99 +  18854210 aaatctccactttgaacaagttccagggga--tctgatg--ctgctg---ggtgggcccccactctgcaaaccactgCTCTAGCTCTGAGCGGGCAGAGACTATAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58112043 91 -  94987271 ATGCAGGTATCTCACATGGGTTACTG----ATGCTCCTGGCCTAGAGCTCAGGGAGAAAC-----------CTGCTACCCCACCTCTGAGCAGATAGGGACTCTGC
i mm10.chr17               I 4 C 0
s canFam3.chr35            26352214 52 +  26524999 GCATC-----------------CCTGGGGCAGGCAGGTG--GTGT--------------------------CCTTGACCCCTGCTCGGCCT---CAGGGA------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               374736 389 + 123392446 I
e dasNov3.JH567297            45707  0 +     53444 C

a score=75105.000000
s hg38.chr6_GL000254v2_alt  1500146 8 +   4827813 ctgcctt-g
s panTro5.chr6             30368973 8 + 175400573 ctgcctt-g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30603302 8 + 173848474 ctgcctt-g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     311024 8 +   2037526 ctgcctt-g
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74977459 8 + 122973662 ctgcctt-g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30855657 8 + 172585720 ctgcctt-g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30145139 8 - 170955103 ctgcctt-g
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     394358 8 +   1495729 ttgcttt-g
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     496062 8 -    863181 CTGCCTT-G
i cerAty1.NW_012002535v1   C 0 I 625
s chlSab2.chr17            29644665 8 -  71996105 ctgcctt-g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     377495 8 -    735854 ctgcctt-g
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     283024 8 -   1829203 ctgcctt-g
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30482810 8 + 171630274 ctgcctt-g
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           288893 8 +    515838 ctgcctt-g
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     918029 8 -   1771730 ctgcctt-g
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      99096 8 -    486031 ctgcctt-g
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     294781 8 -   1411461 ctgcctct-
i proCoq1.NW_012149775v1   N 0 C 0
s otoGar3.GL873550           333819 7 +  18854210 TTGCCTC--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58112134 8 -  94987271 ATACCTT-G
i mm10.chr17               C 0 C 0
s canFam3.chr35            26352266 2 +  26524999 -TG------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               374736 389 + 123392446 I
e dasNov3.JH567297            45707 0 +     53444 C

a score=978215.000000
s hg38.chr6_GL000254v2_alt  1500154 92 +   4827813 ctcacctctgtacccgcagagcccaggacatagtaaatgctcaagaaatatctgcttagtgaatagaGAAATGGGTTCATTTATTTATTATT
s panTro5.chr6             30368981 92 + 175400573 ctcacctctgtacccgcagagcccaggacatagtaaatgctcaagaaatatctgcttaatgaatAGAGAAATGGGTTCATTTATTTATTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30603310 92 + 173848474 ctcacctctgtacccgcagagcccaggacatagtaaatgctcaagaaatatctgcttaatgaatAGAGAAATGGGTTCATTTATTTATTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     311032 92 +   2037526 ctcacctctgtacccgcagagcccaggacatagtaaatgctcaagaaatatctgcttaatgaatAGAGAAATGGGTTCATTTATTTATTATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74977467 92 + 122973662 ctcacctctgtacccgcagagcccaggacatagtaaatgctcaagaaatatctgcttaatgaatagaGAAATGGGTTCATTTATTTATTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30855665 92 + 172585720 ctcacctctgtacccgcagagcccaggacatagtaaatgctgaagaaatatcagcttaatgaatAGAGAAATGGGTTCATTTATTTATTATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30145147 92 - 170955103 ctcacctctgtacccgcagagcccaggacatagtaaatgctgaagaaatatcagcttaatgaatAGAGAAATGGGTTCATTTATTTATTATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     394366 91 +   1495729 ttc-ccttttttcccgcagagcccaggacatagtaaatgttgaagaaatatcagcttaatgaatagaGAAATGGGTTCATTTATTTATTATT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29644673 92 -  71996105 ctcacctctgtacccgcagagcccaggacatagtaaatgctcaagaaaaatcggcttaatgaatAGAGAAATGGGTTCATTTATTTATTATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     377503 92 -    735854 ctcacctctgtacccgcagagcccaggacatagtaaatgctgaagaaatatcagcttaatgaatagaGAAATGGGTTCATTTATTTATTATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     283032 91 -   1829203 ctcacctctgtacccgcagagcccaggacatagtaaatgctcaagaaatatcagcttaatcaatAGAGAAACGGGTTCATTTA-TTATTATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30482818 92 + 171630274 ctcacctctgtacctgcagagcccaggacagagtaaatcctcaagaaatatctgcttaatgaatagaGAAGTGGGTTCATTTATTTATTATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           288901 92 +    515838 ctcacctctgtacccgcagaggccaggacagagtaaatgctcaagaaatacctgcttaatgaatagaGAAGTAGATTCATTTATTTATTATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     918037 92 -   1771730 ctcacctctgtacctgcagagcccaggacagagtaaatgctcaagaaatatctgcttaatgagtagaGAAGTGGGTTCATTTATTTATTATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      99104 92 -    486031 ctcacctttgtacccgcagagcccaggacagagtaaatgctcaagaaatatctgcttaatgaatAGAGAAGTGGGTTCATttatttattatt
i aotNan1.NW_018496901v1   C 0 I 7
s proCoq1.NW_012149775v1     294789 91 -   1411461 ctcacctctgtagccacagaa-ccaggacatagtaaatgctcaaggaacatctgcttgactaagtgaTAAGTGGGTTCACTTATTTCTTGTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           333826 81 +  18854210 ----------TATCcacaggatccaggacacagtaaatgctccagaaacatttgcctaataaaGAGAGGAGTGGGTCCATTTATTTCTTG-T
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58112142 59 -  94987271 ---CCTTCTCTATC-------------------TTAACAC-----ACACATGTACTTAGGGAATAGATAATTAGGTTTATTTTTTT------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26352268 67 +  26524999 -TGCACTCTGTAAC-ACGGAG------ACAGAACAAATGCTCCAGAAAC-TCTACCAGATGAATAGA----------------TTTCTTATC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               374736 389 + 123392446 I
e dasNov3.JH567297            45707  0 +     53444 C
e cerAty1.NW_012002535v1     496070 625 -    863181 I

a score=31277.000000
s hg38.chr6_GL000254v2_alt  1500246 4 +   4827813 CCAC
s panTro5.chr6             30369073 4 + 175400573 CCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30603402 4 + 173848474 CCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     311124 4 +   2037526 CCAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74977559 4 + 122973662 CCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30855757 4 + 172585720 CCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30145239 4 - 170955103 CCAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     394457 4 +   1495729 CCAC
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29644765 4 -  71996105 CCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     377595 4 -    735854 CCAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     283123 4 -   1829203 CCAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30482910 2 + 171630274 --AT
i calJac3.chr4             C 0 I 2
s saiBol1.JH378341           288993 2 +    515838 --AT
i saiBol1.JH378341         C 0 I 2
s cebCap1.NW_016107755v1     918129 2 -   1771730 --AT
i cebCap1.NW_016107755v1   C 0 I 2
s proCoq1.NW_012149775v1     294880 4 -   1411461 CTAC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           333907 4 +  18854210 CTGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58112201 4 -  94987271 CCAC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26352335 4 +  26524999 CTTC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               374736 389 + 123392446 I
e dasNov3.JH567297            45707 0 +     53444 C
e aotNan1.NW_018496901v1      99196 7 -    486031 I
e cerAty1.NW_012002535v1     496070 625 -    863181 I

a score=423217.000000
s hg38.chr6_GL000254v2_alt  1500250 34 +   4827813 TTGGAAATAATTTTGGGGAGAGTCAAAGGTCAGC
s panTro5.chr6             30369077 34 + 175400573 TTGGAAATAATTTGGGGGAGAGTCAAAGGTCAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30603406 34 + 173848474 TTGGAAATAATTTGGGGGAGAGTCAAAGGTCAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     311128 34 +   2037526 TTGGAAATAATTTTGGGGAGAGTCAAAGGTCAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74977563 34 + 122973662 TTGGAAATAGTTTTGGGGAGAGTCAAAGGTCAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30855761 34 + 172585720 TTGGAAATAATTTTGGGGAGAGTCAAAGGTCAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30145243 34 - 170955103 TTGGAAATAATTTTGGGGAGAGTCAAAGGTCAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     394461 34 +   1495729 TTGGAAATAATTTTGGGGAGAGTCAAAGGTCAGT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29644769 34 -  71996105 TTGGAAATAATTTTGGGGAGAGTCAAAGGTCAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     377599 34 -    735854 TTGGAAATAATTTTGGGGAGAGTCAAAGGTCAGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     283127 34 -   1829203 TTGGAAATAATTTTGGGGAGAGTCAAAGGTCAGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30482914 34 + 171630274 TTGGAAATAATTCTGGGGAGAGTCAAAGGTCAGC
i calJac3.chr4             I 2 C 0
s saiBol1.JH378341           288997 34 +    515838 TTGGAAATAATTCTGGGGAGAGTCAAAGGTCAGC
i saiBol1.JH378341         I 2 C 0
s cebCap1.NW_016107755v1     918133 34 -   1771730 TTGGAAATAATTCTGGGGAGAGTCAAAGGTCAGC
i cebCap1.NW_016107755v1   I 2 I 121
s aotNan1.NW_018496901v1      99203 34 -    486031 ttGGAAATAATTCTGGGGAGAGTCAAAGGTCAGC
i aotNan1.NW_018496901v1   I 7 I 121
s proCoq1.NW_012149775v1     294884 34 -   1411461 TTGGAAATCATTGCAGGGACAGTCAAAGGTGAGC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           333911 34 +  18854210 TTGGAAATTATTGTGGGGGTAGTCAAAAGTGAGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58112205 34 -  94987271 TTGGAAATAATGTTTAGGCCGGTCATTAGTCAGT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26352339 29 +  26524999 TTGGAAATAAGTCTTGGAA----CAAAGGTCAG-
i canFam3.chr35            C 0 C 0
e micMur3.chr6               374736 389 + 123392446 I
e dasNov3.JH567297            45707  0 +     53444 C
e cerAty1.NW_012002535v1     496070 625 -    863181 I

a score=22037.000000
s hg38.chr6_GL000254v2_alt  1500284 2 +   4827813 CT
s panTro5.chr6             30369111 2 + 175400573 CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30603440 2 + 173848474 CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     311162 2 +   2037526 CT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74977597 2 + 122973662 CT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30855795 2 + 172585720 CT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30145277 2 - 170955103 CT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     394495 2 +   1495729 CT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29644803 2 -  71996105 CT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     377633 2 -    735854 CT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     283161 2 -   1829203 CT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30482948 2 + 171630274 TT
i calJac3.chr4             C 0 I 119
s saiBol1.JH378341           289031 2 +    515838 TT
i saiBol1.JH378341         C 0 I 119
s proCoq1.NW_012149775v1     294918 2 -   1411461 CT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           333945 2 +  18854210 CT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58112239 2 -  94987271 CT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26352368 2 +  26524999 CT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               374736 389 + 123392446 I
e dasNov3.JH567297            45707 0 +     53444 C
e aotNan1.NW_018496901v1      99237 121 -    486031 I
e cebCap1.NW_016107755v1     918167 121 -   1771730 I
e cerAty1.NW_012002535v1     496070 625 -    863181 I

a score=450160.000000
s hg38.chr6_GL000254v2_alt  1500286 38 +   4827813 TTGATTAGAGTGAAATTTCCTTCACTGACAGGTCACTG
s panTro5.chr6             30369113 38 + 175400573 TTGATTAGAGTGAAATTTCCTTCACTGACAGGTCACTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30603442 38 + 173848474 TTGATTAGAGTGAAATTTCCTTCACTGACAGGTCACTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     311164 38 +   2037526 TTGATTAGAGTGAAATTTCCTTCACTGACAGGTCACTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74977599 38 + 122973662 TTGATTAGAGTGAAATTTCCTTCACTGCCAGGCCGCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30855797 38 + 172585720 TTGATTAGAGTAAAATTTCTTTCACTGTCAGGCCACTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30145279 38 - 170955103 TTGATTAGAGTAAACTTTCTTTCACTGTCAGGCCACTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     394497 38 +   1495729 TTGATTAGAGTAAACTTTCTTTCACTGTCAGGCCACTG
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29644805 38 -  71996105 TTGATTAGAGTAAAATTTCTTTCACTGTCAGGCCACTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     377635 38 -    735854 TTGATTACAGTAAAATTTCTTTCACTGCCAGGCCACTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     283163 38 -   1829203 TTGATTAGAGTAAAATTTCCTTCACTGCCAGGCCACTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30483069 38 + 171630274 TTGATTAGAGTAAAATTTCCTTCACTGCCAGGCCACTG
i calJac3.chr4             I 119 C 0
s saiBol1.JH378341           289152 38 +    515838 TTGATTAGAGTAAAATTTCCTTCACTGCCAGGCCACTG
i saiBol1.JH378341         I 119 C 0
s cebCap1.NW_016107755v1     918288 38 -   1771730 TTGATTAAAGTAAAATTTCCTGCACTGCCAGGCCACTG
i cebCap1.NW_016107755v1   I 121 C 0
s aotNan1.NW_018496901v1      99358 38 -    486031 TTGATTAGAGTAAAATTTCCTTTACTGTCAGGCCACTG
i aotNan1.NW_018496901v1   I 121 C 0
s proCoq1.NW_012149775v1     294920 37 -   1411461 TTGATTA-AGTAAAATTTCCTTCACTGCCAGGCCACTG
i proCoq1.NW_012149775v1   C 0 N 0
s otoGar3.GL873550           333947 37 +  18854210 TTGATTA-GGTAAACTTTCCTTCACTGCCAGGCCACTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58112241 36 -  94987271 TTGATTAGAGTAAAACGTTGTCTACTGTCTAGCCCA--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26352370 38 +  26524999 TGGATGATAGTAAAATGACCTTCCATGCCGGACCGCGG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               374736 389 + 123392446 I
e dasNov3.JH567297            45707  0 +     53444 C
e cerAty1.NW_012002535v1     496070 625 -    863181 I

a score=2335233.000000
s hg38.chr6_GL000254v2_alt  1500324 248 +   4827813 GAAGTATTTGCAGGAAATGGAATTAT-GGGAAAAGTCCTTCTAGGGTGACATAACT-GTGGGTGGGTCATTTCAAAATTG-GTGTCATCATTCATTCTGTCATGGTTAGTGAGGAGGTGGTTGGCAGAGAG-------CCA-----TGTCCCATTCCTGACTCTCAT-CCAAACCCTCCCCCACAC---CCTACCACC--ACTCCCTGTTCCGGAAAAGGAAGTGGAGCACAGTCCCCGTA-GGACCGTCTAACTCT---GAGCCAGACTAAC
s panTro5.chr6             30369151 249 + 175400573 GAAGTATTTGCAGGAAATGGAATTAT-GGGAAAAGTCCTTCTAGGGTGACATAACT-GTGGGTGGGTCATTTAAAAATTG-GTGTCATCATTCATTCTGTCATGGTTAGTGAGGAGGTGGTTGGCAGAGAG-------CCA-----TGTCCCATTCCTGACTCTCATTCCAAACCCTCCCCCACAC---CCTACCACC--ACTCCCTGTTCCGGAAAAGGAAGTGGAGCACAGTCCCCACA-GGACCGTCTAACTCT---GAGCCAGACTAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30603480 249 + 173848474 GAAGTATTTGCAGGAAATGGAATTAT-GGGAAAAGTCCTTCTAGGGTGACATAACT-GTGGGTGGGTCATTTAAAAATTG-GTGTCATCATTCATTCTGTCATGGTTAGTGAGGAGGTGGTTGGCAGAGAG-------CCA-----TGTCCCATTCCTGACTCTCATTCCAAACCCTCCCCCACAC---CCTACCACC--ACTCCCTGTTCCGGAAAAGGAAGTGGAGCACAGTCCCCGCA-GGACCGTCTAACTCT---GAGCCAGACTAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     311202 248 +   2037526 GAAGTATTTGCAGGAAATGGAATTAT-GGGAAAAGTCCTTCTAGGGTGACATAACT-GTGGGTGGGTCATTTAAAAATTG-GTGTCATCATTCATTCTGTCATGGTTAGTGAGGAGGTGGTTGGCAGAGAG-------CCA-----TGTCCCATTCCTGACTCTCAT-CCAAACCCTCCCCCACAC---CCTACCACC--ACTCCCTGTTCCGGAAAAGGAAGTGGAGCACAGTCCCCGTA-GGACCGTCTAACTCT---GAGCCAGACTAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74977637 249 + 122973662 GAAGTATTTGCAGGAAATGGACTTAT-GGGAAAAGTCCTTCTAGGGTGACATCACT-GTGGGTGGGTCATTTAGAAATTG-GTGTCATCATTCATTCTGTCATGGTTAGTGAGGAGGTGGTTGGCAGAGAG-------CCA-----TATCCCATTCCTGACTCTCATTCCAAACCCTCCCCTGCCC---CCTACCACC--ACTCCCTGTTCCGGAAAAGGAAGTGGAGCATAGTCCCCGCA-GGACCGTCTAACTCT---GAGCCAGACTAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30855835 251 + 172585720 GAAGTATTTGCAGGAAATGGACTTAT-GGGAAAAGTCCTTCTAGGGTGACATCACT-GTGAGTGAGTCATTTAAAAATTG-GTGTCATCATTCATTCTGTCACGGTTAGTGAGGAGGTGGTTGGCAGAGAG-------CCA-----TATCCCATTCCTGACTCTCGTTCCAAACCCTCTCCCGCCC---CTTACCACC--ACTCCCTGCTCCGGAAAAGGAAATGGAGCACAGTCCCCACA-GGACTGTCCAACTCT-GAGAGCCAGACTTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30145317 251 - 170955103 GAAGTATTTGCAGGAAATGGACTTAT-GGGAAAAGTCCTTCTAGGGTGACATCACT-GTGGGTGAGTCATTTAAAAATTG-GTGTCATCATTCATTCTGTCACGGTTAGTGAGGAGGTGGTTGGCAGAGAG-------CCA-----TATCCCATTCCTGACTCTCGTTCCAAACCCTCTCCCGCCC---CTTACCACC--ACTCCCTGCTCCGGAAAAGGAAATGGAGCACAGTCCCCGCA-GGACCGTCCAACTCT-GAGAGCCAGACTTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     394535 258 +   1495729 GAAGTATTTGCAGGAAATGGACTTAT-GGGAAAAGTCCTTCTAGGGTGACATCACT-GTGGGTGAGTCATTTAAAAATTG-GTGTCATCATTCATTCTGTCACAGTTAGTGAGGAGGTGGTTGGCAGAGAGCCATATTCCA-----TATCCCATTCCTGACTCTCGTTCCAACCCCTCTCCCGCCC---CTTACCACC--ACTCCCTGTTCCGGAAAAGGAAATGGAGCACAGTCCCCACA-GGACTGTCCAACTCT-GAGAGCCAGACTTAC
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29644843 251 -  71996105 GAAGTATTTGCAGGAAATGGACTAAT-GGGAAAAGTCCTTCTAGGGTGACATCACT-ATGGGTGAGTCATTTAAAAATTG-GTGTCATCATTCATTCTGTCACGGTTAGTGAGGAGGTGGCTGGCAGAGAG-------CCA-----TATCCCATTCCTGACTCTCGTTCCAAACCTTCTCCCACCC---CTTACCACC--ACTCCCTGTTCCGGAAAAGGAAATGAAGCACAGTCCCCGCA-GGACCGTCCAACTCC-GAGAGCCAGACTAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     377673 251 -    735854 GAAGTATTTGCAGGAAATGGACTTAT-GGGAAAAGTCCTTCTAGGGTGACATCACT-GTGGGTGAGTCATTTAAAAATTG-GTGTCATCATTCATTCTGTCACGGTTAGTGAGGAGGTGGTTGGCAGAGAG-------CCA-----TATCCCATTCCTGACTCTCGTTCCAAACCCTCTCCCGCCC---CTTACCACC--GCTCCCTGTTCCGGAAAAGGAAATGGAGCACAGTCCCCGCA-GGACCGTCTAACTCT-GAGAGCCAGACTTAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     283201 251 -   1829203 GAAATATTTGCAGGAAATGGACTTAT-GGGAAAAGTCCTTCTAGGGTGACATCACT-GTGGGTGAGTCATTTAAAAATTG-GTGTCATCATTCATTCTGTCACGGTTAGTGAGGAGGTGGTTGGCAGACAG-------CCA-----TATCCCATTCTTGACTCTTATTCCAAACCCTCTCCCGCCC---CTTACCACC--ACTCCCTGTTCCGGAAAAGGAAATGGAGCACAGTCCCCGCA-GGACCATCCAACTCT-GAGAGCCAGACTAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30483107 247 + 171630274 GAAGTATTTGCAGGAAGTGGACTTAT-GGGAAAAGTCCTTCTAAGGTGACATCATT-GTGGGTGAGTCATTTAAAAATAG-GTGGCATCCTTCCTTCTGTCAGGGTTAGTGAGGGAGTGGTTGGCAGAGAG-------CCA-----TATCCCATTC----CTCTCATTCCAAACCCTCCCCACTCC---CCTACCACC--ACTCCCAGTTCCAGAAAAGGAAGGGGAGCGCAGTCCCTACA-AGACAGTCCAACTCT-GACAGCCAGGCTAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           289190 247 +    515838 GAAGTATTTGCAGGAAGAGGACTTAT-GGGAAAAGTCCTTCTAAGGTGACATCATT-GTGAGTGAGTCATTTAAAAATAG-GTGGCATCATTCCTTCTGTCATGGTTAGTGAGGGAGTGGTTGACAGAGAG-------CCA-----TATCCCATTC----CTCTCATTCCAAACCCTCCCCACTCC---CCTACCACC--ACTCCCTGTTCCGGAAAAGGAAGGGGAGCGCAGTCCCTACA-GGGCAGTCCAACTCT-GACAGCCAGGTTAGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     918326 247 -   1771730 GAAGTATTTGCAGGAAGTAGACTTAT-GGGAAAAGTCCTTCTAAGGTGACATCATT-GTGGGTGAGTCATTTACAAATAG-GTGGCATCATTCCTTCTGTCATGGTTAGTGAGGGAGTGGTTGGCAGAGAG-------CCA-----TATCCCATTC----CTCTCATTCCAAACCCTCCCTACTCC---CCTACCACC--ACTCCCTGTTCCGGAAAAGGAAGGGGAGCGCAGTCGCTACA-GGACAGTCCAACTCC-GACAGCCAGGCTAGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      99396 247 -    486031 GAAGTATTTGCAGGAAGTGAACTTAT-GGGAAAAGTCATTCTAAGGTGACATCATT-GTGGGTGAGTCATTTAATAATAG-GTGGCATCATTCCTTCTGTCATGGTTAGTGAGGGAGTGGTTGGCAGAGAG-------CCA-----TATCCCGTTC----CTCTCATTCCAAACACTCCCCACTCC---CCTACCACC--ACTCCCTGTTCCGGAAAAGGAAGGGGAGCGCAGTCCCTACA-GGACAGTCCAACTCT-GACAGCCAGGCTAGC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           333984 233 +  18854210 AGAATACTTCGAAGAAGTAGACTTATGGGGAAAAGTTCTTCTCAGGTGACACTCTT-GTGGTTGGGTCATTGAGAAATAG-GTGGCAGT----------------------AGGAGGTGA-TGACATAGAG-------CCA-----CATTCCATTACCATCTGTCATTTCAAACTCTCCCCCTCCCTTTCCTACCACC--ATTCCCTATTCCAGAAAAGGGAAATGGGCACAGTTCCTACATGGGCAGTCCAACTCA-GAGAGCTAGACCAAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58112277 226 -  94987271 -------TTGCAGGAAGTAGGTTTCC--AGAAATGTCCTCCCAGGGGAATGTTTTTCGTGGGTGTGACATATAGAAATAT-GTGACATTGTTCATGACTTCACCGTTGGTGGGGA--------GCAGAAAG-------TCA-----TAACATA-----------CATTTCAAACCTTCT-TGGCTG---GCTGCCATATGACTCCTTCTTCTGGGAAAGG-AGTGCAGCCCAGTTCCTATA-ATGGTGTCTCAGTTTAGACAGCCATTACAAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26352408 228 +  26524999 GGGATACTTGCAGGAC-TGGGAGTGC-ATGGAGGCCTCTTCCGGGGCCACAGTTCT-GTGGGTGGGCTCTTTAGAAATGACCCAACGCCATTCATGATGTCACAGTGTGTG---------CTGGCAGAGAG-------CCACTGCTTGACTCATTTC---CTGGCATTCACAGCCTTT-----------CCTACCACC--AG---CTGTTCTAGGAAAGTGGGAAGAGC-----CCTTGCA-GGGACCTCTCACTTG-TAGCAGCAGACAGAT
i canFam3.chr35            C 0 I 102
e micMur3.chr6               374736 389 + 123392446 I
e dasNov3.JH567297            45707   0 +     53444 C
e cerAty1.NW_012002535v1     496070 625 -    863181 I

a score=198618.000000
s hg38.chr6_GL000254v2_alt  1500572  37 +   4827813 AGAAAGAAAGTGAG-----------------------------------------------------------------------------------------AAGGAAG-GAGGGAC---------------------------------------------------------------------GAGCC--------------------------------------------------------------------------------AGAT
s panTro5.chr6             30369400  33 + 175400573 AGAAAGA----GAG-----------------------------------------------------------------------------------------AAGGAAG-GAGGGAC---------------------------------------------------------------------GAGCC--------------------------------------------------------------------------------AGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30603729  33 + 173848474 AGAAAGA----GAG-----------------------------------------------------------------------------------------AAGGAAG-GAGGGAC---------------------------------------------------------------------GAGCC--------------------------------------------------------------------------------AGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     311450  37 +   2037526 AGAAAGAAAGTGAG-----------------------------------------------------------------------------------------AAGGAAG-GAGGGAC---------------------------------------------------------------------GAGCC--------------------------------------------------------------------------------AGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74977886  37 + 122973662 AGAAAGAAAGTGAG-----------------------------------------------------------------------------------------AAGGAAG-GAGGGAT---------------------------------------------------------------------GAGCC--------------------------------------------------------------------------------AGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30856086  37 + 172585720 AGAAGGAAAGTGAG-----------------------------------------------------------------------------------------AAGGAGG-GAGGGAC---------------------------------------------------------------------GGGCC--------------------------------------------------------------------------------AGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30145568  37 - 170955103 AGAAGGAAAGTGAG-----------------------------------------------------------------------------------------AAGGAGG-GAGGGAC---------------------------------------------------------------------GGGCC--------------------------------------------------------------------------------AGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     394793  37 +   1495729 AGAAGGAAAGTGAG-----------------------------------------------------------------------------------------AAGGAGG-GAGGGAC---------------------------------------------------------------------GGGCC--------------------------------------------------------------------------------AGCT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29645094  37 -  71996105 AGAAGGAAAGTGAG-----------------------------------------------------------------------------------------AACAAGG-GAGGGAC---------------------------------------------------------------------GGGCC--------------------------------------------------------------------------------AGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     377924  37 -    735854 AGAAGGAAAGTGAG-----------------------------------------------------------------------------------------AAGGAGG-GAGGGAC---------------------------------------------------------------------GGGCC--------------------------------------------------------------------------------AGCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     283452  37 -   1829203 AGAAGGAAAGTGAG-----------------------------------------------------------------------------------------AAGGAGG-GAGGGAC---------------------------------------------------------------------GGGCC--------------------------------------------------------------------------------AGCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30483354  37 + 171630274 AGAAGGAAAGCAAG-----------------------------------------------------------------------------------------GAGGAGG-GAGGGAA---------------------------------------------------------------------GAGCC--------------------------------------------------------------------------------AGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           289437  37 +    515838 AGAAGGAAATCAAG-----------------------------------------------------------------------------------------GAGGAGG-GAGGGAA---------------------------------------------------------------------GAGCC--------------------------------------------------------------------------------AGCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     918573  37 -   1771730 AGAAGGAAAGCGAG-----------------------------------------------------------------------------------------GAGGAGG-GAGGGAA---------------------------------------------------------------------GAGCC--------------------------------------------------------------------------------AGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      99643  37 -    486031 AGAAGGAAAGCAAG-----------------------------------------------------------------------------------------GAGGAGG-GAGGGAA---------------------------------------------------------------------GAGCC--------------------------------------------------------------------------------AGCT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           334217  31 +  18854210 AGAAGGAAGGTGGG-----------------------------------------------------------------------------------------GGCGAGGAGAATGAC---------------------------------------------------------------------AT---------------------------------------------------------------------------------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58112503 126 -  94987271 AAAAAGAAGTAGGGGGAAAggctgggcacatgggtcagtgtagagcacttgtttaagccctgagttcagctttcaggagtgcaaaaaaCCAGTGACAGAAAGCAAAGGAG-GAGGGAA---------------------------------------------------------------------GGATC--------------------------------------------------------------------------------AGCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26352738 186 +  26524999 agagagagagagag-----------------------------------------------------------------------------------------gagagag-GAGGGGCAAGGGGAGGAGGGAGGATGGGGCTTGGGGCTTGAGCTGTCCCAAGgggagagggggagggagagggagagagccaaggaaagtgagagagggagggggagggagaaggacaaggaggagggggaggggaggggagaaggaggggaagagACATAAGCT
i canFam3.chr35            I 102 C 0
e micMur3.chr6               374736 389 + 123392446 I
e dasNov3.JH567297            45707   0 +     53444 C
e cerAty1.NW_012002535v1     496070 625 -    863181 I

a score=696568.000000
s hg38.chr6_GL000254v2_alt  1500609 64 +   4827813 ACCACAGGGTCAAGATAAATACTGTTGTTGGCTATTAATTAACAATGTTCATCATCAAAAACTT
s panTro5.chr6             30369433 62 + 175400573 ACCACAGGGTCAAGATAAA--CTGTTGTTGGCTGTTAATTAACAATGTTCATCATCAAAAACTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30603762 62 + 173848474 ACCACAGGGTCAAGATAAA--CTGTTGTTGGCTGTTAATTAACAATGTTCATCATCAAAAACTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     311487 64 +   2037526 ACCACAGGGTCAAGATAAATACTGTTGTTGGCTATTAATTAACAATGTTCATCATCAAAAACTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74977923 64 + 122973662 ACCACAGGGTCAAGATAAATACTGTTGTTGGCTATTAATTAACAATGTTCATCATCAAAAACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30856123 64 + 172585720 ACCACAGGGTCAAGATAAATACTGTGGCTGGCTATTAATTAACAATGCTCATCATCAAAAACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30145605 64 - 170955103 ACCACAGGGTCAAGATAAATACTGTGGCTGGCTATTAATTAACAATGCTCATCATCAAAAACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     394830 64 +   1495729 ACCACAGGGTCAAGATAAATACTGTGGCTGGCTATTAATTAACAATGCTCATCATCAAAAACTT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29645131 64 -  71996105 ACCACAGGGTCAAGATAAATACTGTGGCTGGCTATTAATTAACAATGCTCATCATCAAAAACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     377961 64 -    735854 ACCACAGGGTCAAGATAAATACCGTGGCTGGCTATTAATTAACAATGCTCATCATCAAAAACTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     283489 64 -   1829203 ACCACAGGGTCAAGATAAATACTGTGGCTGGCTATTAATTAACAATGCTCGTCATCAAAAACTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30483391 64 + 171630274 ACCACAGGGTAAAGATAAATACTGTCGTTGGCTATTAATTAACAATGTTCATCATCAAAAACTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           289474 64 +    515838 ACCACAGGGTAAAGATAAATACTGTCGCTGCCTGTTAATTAACAATGTTCATCATCAAAAACCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     918610 64 -   1771730 ACCACAGGGTAAAGATAAATACTGTTGCTGGCTATTAATTCACAACGTTCATCATCAAAAACTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      99680 64 -    486031 ACCACAGAGTAAAGATAAATACTGTCTCTGGCTATTAATTAACAGTGTTCATTATCAAAAACTT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     193534 63 -   1411461 ACCACAGGGTACAGATAAATATGTC-GTTGGCTGTTAATTGACAACGTTCTTCATCAAAAACTT
i proCoq1.NW_012149775v1   N 0 C 0
s otoGar3.GL873550           334248 57 +  18854210 ACCATAG------GATAAATACTGT-GACAGCTACTAATTAACAATGTTTATTATCAAAAATTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58112629 50 -  94987271 TCCACGGTG---AGGCAGATACTGCAACCGACTAC-AGTTAAC---------CATCAAAACCC-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26352924 58 +  26524999 GCCACAAGGCCAAGAGAAATGCTGTTCCTGGTT----ATTAACATTGTTCATCATCAGAAAT--
i canFam3.chr35            C 0 C 0
e micMur3.chr6               374736 389 + 123392446 I
e dasNov3.JH567297            45707  0 +     53444 C
e cerAty1.NW_012002535v1     496070 625 -    863181 I

a score=1631733.000000
s hg38.chr6_GL000254v2_alt  1500673 134 +   4827813 ATCACATATTACAAATGT------------TGCTGTGGGATTTTTTAACTTATTAAGAATGAT--ATATTGTTAATCATTATCTTTCATATTGCTTAATG--ACCACTAATCAGATTTGTT----GAATTAT-TTTAAAATCAGTTTAACTTTTT
s panTro5.chr6             30369495 134 + 175400573 ATCATATATTACAAATGT------------TGCTGTGGGATTTTTTAACTTATTAAGAATGAT--ATATTGTTAATCATTATCTTTCATATTGCTTAATG--ACCACTGATCAGATTTGTT----GAATTAT-TTTAAAATCAGTTTAACTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30603824 134 + 173848474 ATCATATATTACAAATGT------------CGCTGTGGGATTTTTTAACTTATTAAGAATGAT--ATATTGTTAATCATCATCTTTCATATTGCTTAATG--ACCACTGATCAGATTTGTT----GAATTAT-TTTAAAATCAGTTTAACTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     311551 133 +   2037526 ATCACATATTACAAATGT------------TGCTGTGGGATTTTTTAACTTATTAAGAATGAT--ATATTGTTAATCATTCTCTTTCATATTGCTTAATG--ACCACTGATCAGATTTGTT----GAATTAT-TTTAAAATC-GTTTAACTTTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74977987 133 + 122973662 ATCACATATTACAAATGT------------TGCTGTGGGA-TTTTTAACTTATTAAGAAGGAT--ATATTGTTAATCATTATCTTTCATATTGCTTAATG--ACCACTGATCAGATTTGTT----GAATTAT-TTTAAAATCAGTTTAACTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30856187 134 + 172585720 ATCACGTATTACAAATGT------------TGCTGTGGGATTTTTTAATTTATTAAGAATGAT--ATACTGTTAATCATTATCTTTCATATTGCTTAATG--ACCACTGATCAGATTTGTT----GAATTAT-TTTAAGATCAGTTTAACTTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30145669 134 - 170955103 ATCACGTATTACAAATGT------------TGCTGTGGGATTTTTTAATTTATTAAGAATGAT--ATACTGTTAATCATTATCTTTCATATTGCTTAATG--ACCACTGATCAGATTTGTT----GAATTAT-TTTAAGATCAGTTTAACTTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     394894 134 +   1495729 ATCACGTATTACAAATGT------------TGCTGTGGGATTTTTTAATTTATTAAGAATGAT--ATACTGTTAATCATTATCTTTCATATTGCTTAATG--ACTACTGATCAGATTTGTT----GAATTAT-TTTAAGATCAGTTTAACTTTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     496695 134 -    863181 ATCACGTATTACAAATGT------------TGCTGTGGGATTTTTTAATTTATTAAGAATGAT--ATACTGTTAATCATTATCTTTCATATTGCTTAATG--ACCACTGATCAGATTTGTT----GAATTAT-TTTAAAATCAGTTTAACTTTTT
i cerAty1.NW_012002535v1   I 625 C 0
s chlSab2.chr17            29645195 134 -  71996105 ATCATGTATTACAAATGT------------TGCTGTGGGATTTTTTAATTTATTAAGAATGAT--ATACTGTTAATCATTATCTTTCATATTGCTTAATG--ACCACTGATCAGATTTGTT----GAATTAT-TTTAAGATCAGTTTAACTTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     378025 134 -    735854 ATCACGTATTACAAATGT------------TGCTGTGGGATTTTTTAATTTATTAAGAATGAT--ATACTGTTAATCATTATCTTTCATATTGCTTAATG--ACCACTGATCAGATTTGCT----GAATTAT-TTTAAGATCAGTTTAACTTTTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     283553 134 -   1829203 ATCAGGTATTACAAATGT------------TGCTGTGGGATTTTTTAATTTATTAAGAATGAT--ATACTGTTAATCATTATCTTTCATGTTGCTTAATG--ACCACTGATCAGATTTGTT----GAATTAT-TTTAAAATCAGTTTAACTTTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30483455 134 + 171630274 ACCATGTATTACAAATGT------------TGCTGTGGGATTTTTTAACGTATTAAGAATGAT--TTATTGTTAATCATTATTTTTCATATTGCTTAATG--TTCACTGATCAGATTTGCT----GAACTAT-TTTTAAATCAGTTTAACTTTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           289538 134 +    515838 ATCATGTATTACAAATGT------------TGCTGTGGGGTTTTTTAACTTATTAAGAATGAT--ATATTGTTAATCATTATTTTTCATGTTGCTTAATG--TCCACTGATCAGATTTCTT----GAATTat-ttttaaatcagtttaacgtttt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     918674 133 -   1771730 ATCATGTATTATAAATGT------------TGCTGTGGGATTTTTTAATGTATTAAGAATGAT--ATATTGTTAACCATTATTTTTCATATTGTTTAATG--TCCACTGATCAGATTTGTT----GAATTat-ttttaaatcagtttaatg-ttt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      99744 131 -    486031 ATCATGTATTACAAATGT------------TGCTGTGGGATTTTTTAACTTATTAAGAATGAT--GTATTGTTAATCATTATTTTTCATGTTGCTTAATG--TCCACTGATC--ATTTGTT----GAA-TAT-TTTTAAATCAGTTTAACTTTTT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     193597 136 -   1411461 ATCACACATCGCAGATGT------------TACCGTGGG-CTTTTTAACTCATTGTGAACGGCGGATGTTGTTAGTCATCATCTTGTATATTGCTTAACG--CCATCTGATCAGATTTGTT----CAATTATATTTCAAATCAGATCAAATTCTT
i proCoq1.NW_012149775v1   C 0 I 1
s otoGar3.GL873550           334305 136 +  18854210 ATTACATATTACAAATGT------------TGCCATGGG-CTTTTTGACTTATTGAGAATGACAAATGTTGTTAATCAGTATCTTTTATATTATTTAATG--CCAACTGATCAAATTTGTG----TAATTATTTTTTAAATCAGTTCAATATTTT
i otoGar3.GL873550         C 0 I 269
s mm10.chr17               58112679 122 -  94987271 ACACTGCATCACACCTGC------------CTCTGAGAA---TCCTCGGTGATGCAGAGTCATGGATGTTGCTAATCACTATTTTTC-TACTACGTTATGGCACAACTGGCCAGATATGTT----TAATAGG-TTGATCCCCA------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26352982 152 +  26524999 GTCATGTATTATAGGTGTATAATAGATAGATTTTGTAGA-TTTTGTAAATCGTTGAGAATGGCAAGTTTTGTTAATCATTATTTTTGATGTTGTTCAATG--TCAAGGGATCAGATTTATTTGTGTGATTATTTTTCATATCAGTTAAATATTTT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               374736 389 + 123392446 I
e dasNov3.JH567297            45707   0 +     53444 C

a score=547252.000000
s hg38.chr6_GL000254v2_alt  1500807 42 +   4827813 CACCAGAAATAttcacctttattctctttcttca-ttgtcaca
s panTro5.chr6             30369629 42 + 175400573 CACCAGAAATAttcacctttattctctttcttca-ttgtcaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30603958 42 + 173848474 CACCAGAAATAttcacctttattctctttcttca-ttgtcaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     311684 42 +   2037526 CACCAGAAATAttcacctttattctctttcttca-ttgtcaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978120 42 + 122973662 CACCAGAAATAttcgcctttattctctttcttca-ttgtcata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30856321 42 + 172585720 CACCAGAAATATTCACCTTTATTCTCTTTCTTCA-TCGTCACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30145803 42 - 170955103 CACCAGAAATATTCACCTTTATTCTCTTTCTTCA-TCGTCACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395028 42 +   1495729 CACCAGAAATAttcacctttattctctttcttca-tcgtcaca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     496829 42 -    863181 CACCAGAAATAttcacctttattctctttcttca-tcgtcaca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29645329 42 -  71996105 CACCAGAAATATTCACCTTTATTCTCTTTCTTCA-TCATCACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     378159 42 -    735854 CACCAGAAATATTCACCTTTATTCTCTTTCTTCA-TCGTCACA
i manLeu1.NW_012107142v1   C 0 T 14412
s colAng1.NW_012115577v1     283687 42 -   1829203 CACCAGAAATATTCACCTTTATTCTCTTTCTTCA-TCGTTACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30483589 42 + 171630274 TGCCAGAAATAttcacctttattatctttcttca-ttgtcaca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           289672 42 +    515838 tgccagaaatattcacctttattatctttcttca-ttgtcacg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     918807 42 -   1771730 tgccagaaatattcacctttattatctttcttca-ttgtcgca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      99875 42 -    486031 TGCCAGAAATAttcacctttattatctttcttca-ttgtcacg
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     193734 42 -   1411461 TTCCAGAAATcttcacctttattatctctcttca-ttgtcaca
i proCoq1.NW_012149775v1   I 1 C 0
s otoGar3.GL873550           334710 36 +  18854210 cccCCAAAATctttacctttattatctctcttca-t------a
i otoGar3.GL873550         I 269 C 0
s mm10.chr17               58112801 42 -  94987271 ACTCCCAACTCCTCACTTTTATCATGTCTCTTTG-AGGCCACA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26353134 38 +  26524999 ---CTGAAATCTTCGTCTTTATTCTC--TCTTCACTTATCGCA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               374736 389 + 123392446 I
e dasNov3.JH567297            45707  0 +     53444 C

a score=708442.000000
s hg38.chr6_GL000254v2_alt  1500849 53 +   4827813 atatcctaataggcagattttat-aaaaatctgcaaataaggaaatcaaggcac
s panTro5.chr6             30369671 53 + 175400573 atatcctaataggcagattttgt-aaaaatctgcaaataaggaaatcaaggcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604000 53 + 173848474 atatcctaataggcagattttgt-aaaaatctgcaaataaggaaatcaaggcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     311726 53 +   2037526 atatcctaataggcagattttat-aaaaatctgcaaataaggaaatcaaggcac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978162 53 + 122973662 atatcctaataggcagattttac-aaaaatctgcaaataaggaaatcaaggcac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30856363 53 + 172585720 GTATCCTAATAGGCAGATTTTAT-AAAAATCTGCAAATAAGAAAATCAAGGCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30145845 53 - 170955103 GTATCCTAATAGGCAGATTTTAT-AAAAATCTGCAAATAACAAAATCAAGGCAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395070 53 +   1495729 gtatcctaataggcagattttat-aaaaatctgcaaataagaaaatcaaggcac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     496871 53 -    863181 atatcctaataggcagattttat-aaaaatctgcaaataagaaaatcaaggcac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29645371 37 -  71996105 GTATCCTAATAGGCAGATTTTAT-A----------------AAAATCAAGGCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     363789 53 -    735854 atatcctaataggcagattttat-aaaaatctgcaaataagaaaatcaaggcac
i manLeu1.NW_012107142v1   T 14412 C 0
s colAng1.NW_012115577v1     283729 53 -   1829203 GTATCCTAATAGGCAGATTTTAT-AAAAATCTGCAAATAAGAAAATCAAGGCAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30483631 53 + 171630274 atattctaataggcagatttcat-aaaaatctgcaaataaggaaatcaaggcac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           289714 53 +    515838 atattctaataggcagacttcat-aaaagtctgaaaataaggaaatcaaggcac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     918849 54 -   1771730 atattctaacaggcagatttcataaaaaatctgcaaataaggaaatcaaggcac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      99917 53 -    486031 atatcctaataggcagatatcat-aaaaatctgcaaataaggaaatcaaggcac
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     193776 53 -   1411461 atatcctgataggcagattttat-aaaaatctgcaaataaggaaatcaaggcac
i proCoq1.NW_012149775v1   C 0 I 69
s otoGar3.GL873550           334746 53 +  18854210 atattctaacaggcagattttat-aagaatctgcaaataaggaaatcaaggcac
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58112843 53 -  94987271 CAGTCCCAAGAGTTAGATTTTAC-CGGACTTGGCAAATAAGAAAATCAAGGTAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26353172 48 +  26524999 TGATCCTGACATGCGGATTTTAT-AAAGATGTA-----AAGGGAAGGAGGGAGT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               374736 389 + 123392446 I
e dasNov3.JH567297            45707  0 +     53444 C

a score=819674.000000
s hg38.chr6_GL000254v2_alt  1500902 81 +   4827813 -aggaaggaataaggcttgccaaa-------gtcacacctttcagcagtggagcgtggaggccactcct-aaacccaggcttcatggcca
s panTro5.chr6             30369724 81 + 175400573 -aggaaggaataaggcttgccaaa-------gtcacacCTTTCAGCAGTGGAGCGTGGAGGCCACTCCT-AAACCTGGGCTTCATGGCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604053 81 + 173848474 -aggaaggaataaggcttgccaaa-------gtcacacCTTTCAGCAGTGGAGCGTGGAGGCCACTCCT-AAACCTGGGCTTCATGGCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     311779 81 +   2037526 -aggaaggaataaggcttgccaaa-------gtcacacctttcatcagtggAGCGTGGAGGCCACTCCT-AAACCTGGGCTTCATGGCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978215 81 + 122973662 -aggaaggaatacggcttgccaaa-------ataacacctttcagcagcggagcgtggaggccactcct-aaacctgggcttcatggcca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30856416 81 + 172585720 -AGGAACGAATAAACCTTGCCAAA-------GTCACACCTTTCAGCAGTGGAGCGTGGAGTCCACTCCT-AAACCCGGGCTTCATGGCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30145898 81 - 170955103 -AGGAACCAATAAACCTTGCTAAA-------GTCACACCTTTCAGCAGTGGAGCGTGGAGTCCACTCCT-AAACCCGGGCTTTATGGCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395123 81 +   1495729 -aggaacgaataaacctttccaaa-------gtcacacctttcagcagtggagcgtggagtccactcct-aaacccgggcttcatggcca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     496924 82 -    863181 -aggaacgaataaacctttccaaa-------gtcacacttttcagcagtggagcgtggagtccactcctaaaacccgggcttcatggcca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29645408 81 -  71996105 -AGGAACGAATAAACCTTGCCAAA-------GTCACACCTTTCAGCAGTGGAGCGTGGAGTCCACTCCT-AAACCCAGGTTTCATGGCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     363842 82 -    735854 -aggaacgaataaaacttgccaaa-------gtcacacctttcagcagtggagggtggggtccactcctaaaacccgggcttcatggcca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     283782 81 -   1829203 -AGGAACGAATAAACCTTGCCAAA-------GTCACACCTTTCAGCAGTGGAGCGTGCAGTCCACTCCT-AAACCCGGGCTTCATGGCCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30483684 81 + 171630274 -aggaaggactaagccttgtcaaa-------gtcacacctttcagcagcagagcgtggaggccactcct-aagcccaggcttgatgccca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           289767 81 +    515838 -aggaaggactaagacttgccaaa-------gtcacacctttcagcagcggagtgtagaggccactccc-aagcccaggcttgatgccca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     918903 81 -   1771730 -aggaaggactaagccttgccaaa-------gtcacaccttttagcagcagagcgtggaggccactcct-aagcccaggcttgatgccca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      99970 81 -    486031 -aggaaggactaagccttgccaaa-------gtcacacCTTTCAGCAGCGGAGTGTGGAGGCCACTCCT-AAGCCCAGACTTGATGCCCA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           334800 78 +  18854210 -agaaagggataaaccttgacaca----------acaccatttggctatggatcacagaggccattcct-aaacccgggcttcatgccca
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58112896 72 -  94987271 -TGAAGGAAATTAGATGTGCTAAAATACATAGTGCCGCCATTTGGCAGTGGAGGCAGGAGGCCATTCCT-AAGC----------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26353220 50 +  26524999 GGGAAGGGAACTAGCC----CAAA-------GTCCC------------TGCAGCTTGGG-----CTGCT-GTGCCCGGG-----------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               374736 389 + 123392446 I
e dasNov3.JH567297            45707  0 +     53444 C
e proCoq1.NW_012149775v1     193829 69 -   1411461 I

a score=241291.000000
s hg38.chr6_GL000254v2_alt  1500983 20 +   4827813 cctgcgctctGTGGAGGCCT
s panTro5.chr6             30369805 20 + 175400573 CCTGTGCTCTGTGGAGGCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604134 20 + 173848474 CCTGTGCTCTGTGGAGGCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     311860 20 +   2037526 CCTGCGCTCTGTGGAGGCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978296 20 + 122973662 cctgtgctctGTGGAGGCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30856497 20 + 172585720 CCTGTGCTCTGTGGAGGCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30145979 20 - 170955103 CCTGTGCTCTGTGGAGGCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395204 20 +   1495729 cctgtgctctGTGGAGGCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497006 20 -    863181 cctgtgctctGTGGAGGCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29645489 20 -  71996105 CCTGTGCTCTGTGGAGGCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     363924 20 -    735854 cctgtgctctGTGGAGGCCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     283863 20 -   1829203 CCTGTGCTCTGTGGAGGCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30483765 20 + 171630274 cctgctctctGTGGAGACCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           289848 20 +    515838 cctgcactctGTGGAGGCCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     918984 20 -   1771730 cctgtgctctGTGGAGGCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100051 20 -    486031 CCTGCCCTCTGTGGAGACCT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     193898 20 -   1411461 cctgtgctctGCAGAAGCCC
i proCoq1.NW_012149775v1   I 69 C 0
s otoGar3.GL873550           334878 20 +  18854210 cctgtgctctGTGGGGACCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58112968  9 -  94987271 ---------TGGGGGGGG--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26353270  5 +  26524999 ---GCACT------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               374736 389 + 123392446 I
e dasNov3.JH567297            45707  0 +     53444 C

a score=1481276.000000
s hg38.chr6_GL000254v2_alt  1501003 85 +   4827813 GGGGTTCTCTTACCCAGAAACATCTTCATCTCCCTCTGCAGCGGGAGGGCCTGCTGGGGAAAGTCCCGAATCCTCTGGCCCAGCT
s panTro5.chr6             30369825 85 + 175400573 GGGGTTCTCTTACCCAGAAACATCTTCATCTCCCTCTGCAGCGGGAGGGCCTGCTGGGGAAAGTCCCGAATCCTCTGGCCCAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604154 85 + 173848474 GGGGTTCTCTTACCCAGAAACATCTTCATCTCCCTCTGCAGCGGGAGGGCCTGCTGGGGAAAGTCCCGAATCCTCTGGCCCAGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     311880 85 +   2037526 GGGGTTCTCTTACCCAGAAACATCTTCATCTCCCTCTGCAGCGGGAGGGCCTGCTGGGGAAAGTCCCGAATCCTCTGGCCCAGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978316 85 + 122973662 GGGGTTCTCTTACCCAGAAACATCTTCATCTCCCTCTGCAGCGGGAGGGCCTGCTGGGGAAAGTCCCGAATCCTCTGACCCAGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30856517 85 + 172585720 GGGATTCTCTTACCCAGAAACATCTTCATCTCCCTCTGTAGCGGGAGGGCCTGCTGGGGAAAGTCCCGAATCCTCTGGCCCAGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30145999 85 - 170955103 GGGATTCTCTTACCCAGAAACATCTTCATCTCCCTCTGTAGCGGGAGGGCCTGCTGGGGAAAGTCCCGAATCCTCTGGCCCAGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395224 85 +   1495729 GGGATTCTCTTACCCAGAAACATCTTCATCTCCCTCTGTAGCGGGAGGGCCTGCTGGGGAAAGTCCCGAATCCTCTGGCCCAGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497026 85 -    863181 GGGATTCTCTTACCCAGAAACATCTTCATCTCCCTCTGTAGCGGGAGGGCCTGCTGGGGAAAGTCCCGAATCCTCTGGCCCAGCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29645509 85 -  71996105 GGGATTCTCTTACCTAGAAACATCTTCATCTCCCTCTGTAGCGGGAGGGCCTGCTGGGGAAAGTCCCGAATCCTCTGGCCCAGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     363944 85 -    735854 GGGATTCTCTTACCCAGAAACATCTTCATCTCCCTCTGTAGCGGGAGGGCCTGCTGGGGAAAGTCCCGAATCCTCTGGCCCAGCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     283883 85 -   1829203 CGGGTTCTCTTACCCAGAAACATCTTCATCTCCCTCTGCAGCGGGAGGGCCTGCTGGGCAAAGTCCCGAATCCTCTGGCCCAGCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30483785 85 + 171630274 GGGGTTCTCTTACCCAGAAACATCTTCATCTCCCTTTGCAGTGGGACGGCCTGCTGGGGGAAGTCCCGAATCCGCTGGCCCAGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           289868 85 +    515838 GGGGTCCTCTTACCCAGAAATATCTTCATCTCCCTCTGCAGTGGGAGGGCCTGCTGGGGGAAGTCCCGAATCCGCTGGCCCAGCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919004 85 -   1771730 GGGGTCCTCTTACCCAGAAACATCTTCATCTCCCTCTGCAGTGGGAGGACCTGCTGGGGGAAGTCCCGGATCCGCTGGCCCAGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100071 85 -    486031 GGGGTCCTCTTACCCAGAAACATCTTCATCTCCCTCTGCAGTGGGAGGGCCTGCTGGGGGAAGTCCCGAATCCGCTGGCCCAGCT
i aotNan1.NW_018496901v1   C 0 I 34
s micMur3.chr6               375125 85 + 123392446 GGGGGTCTCTTACCCAGAAACAGCTTCACGCCCCTCTGCAGCGGCAGGGCCTGCCTCGGGAGGTCCCGAATCCTCTGGCCCAGCT
i micMur3.chr6             I 389 C 0
s proCoq1.NW_012149775v1     193918 85 -   1411461 GGGGTCCTCTTACCCAGAAACAGCTTCACCTCCCTCTGCAGCGGGAGAGCCTGTTTCGGGAGGTCCCGAATCCTCTGGCCCAGCT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           334898 85 +  18854210 GAGATTCTCTTACCCAGAAACATTTTCATCTCCCTCTGCAGTGGGAGGGCCTGCTGGGGGAAGTCCCGAATCTTCTGACCCAGCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58112977 85 -  94987271 GGGGTCTCCTTACCCAGAAATGTCTTCATCTCCTGCCGCAGAGGGATGGCCTGTTGGGGGAAGTCCCGGATCCTTTGGCCCAGCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26353275 83 +  26524999 --GGACCTCTTACCCAGAAACGTCGTCACCTCCCTGCGCAGTGGCAGGACCCGCTGGGGGAAGTCCCGAATTCTCTGGCCCAGCT
i canFam3.chr35            C 0 C 0
e dasNov3.JH567297            45707  0 +     53444 C

a score=223044.000000
s hg38.chr6_GL000254v2_alt  1501088 17 +   4827813 CTGGCGACACAGCCACC
s panTro5.chr6             30369910 17 + 175400573 CTGGCGACACAGCCACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604239 17 + 173848474 CTGGCGACACAGCCACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     311965 17 +   2037526 CTGGCGACACAGCCACC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978401 17 + 122973662 CTGGCGACACAGCCACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30856602 17 + 172585720 CTGGGGACACAGCCACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146084 17 - 170955103 CTGGGGACACAGCCACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395309 17 +   1495729 CTGGGGACACAGCCACT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497111 17 -    863181 CTGGGGACACAGCCACT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29645594 17 -  71996105 CTGGGGACACAGCCACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364029 17 -    735854 CTGGGGACACAGCCACT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     283968 17 -   1829203 CTGGGGACACAGCCACT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30483870 17 + 171630274 CTCGGGACACAGCCTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           289953 17 +    515838 CTCGGGACACAGCCTCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919089 17 -   1771730 CTCGGGACACAGACTCT
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               375210 17 + 123392446 CCGGGGACACAGCCGCT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     194003 17 -   1411461 CCGGGGACACAGCCGCG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           334983 17 +  18854210 CAGGGGACACAGCTTCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58113062 17 -  94987271 CTGGGGATATAGCCTCG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26353358 17 +  26524999 CCTGAGACACAGCCTCT
i canFam3.chr35            C 0 C 0
e dasNov3.JH567297            45707  0 +     53444 C
e aotNan1.NW_018496901v1     100156 34 -    486031 I

a score=329393.000000
s hg38.chr6_GL000254v2_alt  1501105 17 +   4827813 GGTTTCCGGCACTTTCT
s panTro5.chr6             30369927 17 + 175400573 GGTTTCCGGCACTTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604256 17 + 173848474 GGTTTCCGGCACTTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     311982 17 +   2037526 GGTTTCCGGCACTTTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978418 17 + 122973662 GGTTTCCGGCACTTTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30856619 17 + 172585720 GGTTTCCGGCACTTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146101 17 - 170955103 GGTTTCCGGCACTTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395326 17 +   1495729 GGTTTCCGGCACTTTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497128 17 -    863181 GGTTTCCGGCACTTTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29645611 17 -  71996105 GGTTTCCGGCACTTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364046 17 -    735854 GGTTTCCGGCACTTTCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     283985 17 -   1829203 GGTTTCCGGCACTTTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30483887 17 + 171630274 GGTTTCCGGCACTTTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           289970 17 +    515838 GGTTTCCGGCACTTTCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919106 17 -   1771730 GGTTTCCGGCACTTTCT
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               375227 17 + 123392446 GGCTTCCGGCACTTTCT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     194020 17 -   1411461 GGTTTCCGGCACTTTCT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           335000 17 +  18854210 GGTTTCCGACACTTTCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58113079 17 -  94987271 GGTTTCCGGCACTTTCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26353375 17 +  26524999 GGCTTTCGGCACTTTCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            45707 17 +     53444 GGTTTCCAGCACTTTCT
i dasNov3.JH567297         C 0 C 0
e aotNan1.NW_018496901v1     100156 34 -    486031 I

a score=486336.000000
s hg38.chr6_GL000254v2_alt  1501122 28 +   4827813 GGTTTCACATCTAGGGGCACAGAAATGG
s panTro5.chr6             30369944 28 + 175400573 GGTTTCACATCTAGGGGCACAGAAATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604273 28 + 173848474 GGTTTCACATCTAGGGGCACAGAAATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     311999 28 +   2037526 GGTTTCACATCTAGGGGCACAGAAATGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978435 28 + 122973662 GGTTTCACATCTAGGGGCACAGAAATGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30856636 28 + 172585720 GGTTTCACATCTAGGGGCACAGAAATGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146118 28 - 170955103 GGTTTCACATCTAGGGGCACAGAAATGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395343 28 +   1495729 GGTTTCACATCTAGGGGCACAGAAATGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497145 28 -    863181 GGTTTCACATCTAGGGGCACAGAAATGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29645628 28 -  71996105 GGTTTCACATCTAGGGGCACAGAAATGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364063 28 -    735854 GGTTTCACATCTAGGGGCACAGAAATGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     284002 28 -   1829203 GGTTTCACATCTAGGGGCACAGAAATGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30483904 28 + 171630274 GGTTTCACATCTAGGAGCACAGAAGTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           289987 28 +    515838 GGTTTCACATCTAGGAGCACAGAAAGGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919123 28 -   1771730 GGTTTCACATCTGGGAGCACAGAAATGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100190 25 -    486031 GGTTT--CATCTAGG-GCACAGAAATGG
i aotNan1.NW_018496901v1   I 34 C 0
s micMur3.chr6               375244 28 + 123392446 GGTCTCACACCTAGAGGCACAGAAATGG
i micMur3.chr6             C 0 I 2377
s proCoq1.NW_012149775v1     194037 28 -   1411461 GCGTTCACATCTAAAGGCACAGAAATGG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           335017 27 +  18854210 GGTTTCACATCTA-ATGCACAAAAATGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58113096 28 -  94987271 GGTTTCACatctaggggcacagaaatgg
i mm10.chr17               C 0 C 0
s canFam3.chr35            26353392 27 +  26524999 GGTTTCACTCCTAGG-GTACAGGAAGAG
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            45724 28 +     53444 GTTTTCACATCTAGGGACACAGAAATGA
i dasNov3.JH567297         C 0 C 0

a score=138861.000000
s hg38.chr6_GL000254v2_alt  1501150 10 +   4827813 CTGGGTCTGG
s panTro5.chr6             30369972 10 + 175400573 CTGGGTCTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604301 10 + 173848474 CTGGGTCTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312027 10 +   2037526 CTGGGTCTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978463 10 + 122973662 CTGGGTCTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30856664 10 + 172585720 TTGGGTCTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146146 10 - 170955103 TTGGGTCTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395371 10 +   1495729 TTGGGTCTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497173 10 -    863181 TTGGGTCTGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29645656 10 -  71996105 TTGGGTATGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364091 10 -    735854 TTGGGTCTGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     284030 10 -   1829203 TTGGGTCTGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30483932 10 + 171630274 TTGGGTCTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290015 10 +    515838 TTGGGTCTGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919151 10 -   1771730 TTGGGTCTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100215  9 -    486031 TT-GGTCTGG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     194065 10 -   1411461 TGGGGGCTGG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           335044 10 +  18854210 TGGGGTCTGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58113124 10 -  94987271 cagagtctgg
i mm10.chr17               C 0 I 559
s canFam3.chr35            26353419 10 +  26524999 CAGGGTTTGG
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            45752  9 +     53444 -CACATCTGG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I

a score=95081.000000
s hg38.chr6_GL000254v2_alt  1501160  8 +   4827813 GAAT---TATC
s panTro5.chr6             30369982  8 + 175400573 GAAT---TATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604311  8 + 173848474 GAAT---TATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312037  8 +   2037526 GAAT---TATC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978473  8 + 122973662 GAAT---TATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30856674  8 + 172585720 GAAT---TATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146156  8 - 170955103 GAAT---TATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395381  8 +   1495729 GAAT---TATC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497183  8 -    863181 GAAT---TATC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29645666  8 -  71996105 GAAT---TATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364101  8 -    735854 GAAT---TATC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     284040  8 -   1829203 GAAT---TATC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30483942  8 + 171630274 GAAT---TATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290025  8 +    515838 GAAT---TATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919161  8 -   1771730 GAAT---TATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100224 11 -    486031 AATTACCCATT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     194075  8 -   1411461 GAAT---TATC
i proCoq1.NW_012149775v1   C 0 I 257
s otoGar3.GL873550           335054  8 +  18854210 GAAT---TAAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58113693  8 -  94987271 GAAT---TATT
i mm10.chr17               I 559 C 0
s canFam3.chr35            26353429  8 +  26524999 GAAC---CCCC
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            45761  5 +     53444 GAGT---T---
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I

a score=2726966.000000
s hg38.chr6_GL000254v2_alt  1501168 258 +   4827813 ATCCT-TAATAATGTCTCCAGACTCAGCTG---GTCATCTT---------------------------------------------------------------CTAATAGGGCATG---------ATGGCGCTAGTTCCTGC---AGGCAGACGTACTTCCTCTAGGATGAATCCCA------CTGCC-CATTTTTGGGC--------------ATCTATGGATATACCTG---AGAAGGCATTTGGGTATATAGAGGTTTATATGTAAATTTGTATCCTTAA-GTGAGAATGTTATATACCTGTGTGGCAATAACTAGGCATGCAGTACATGTATGTATATTTATATGGAAAAAGAAAAG
s panTro5.chr6             30369990 258 + 175400573 ATCCT-TAATAATGTCTCCAGACTCAGTCG---GTCATCTT---------------------------------------------------------------CTAATAGGGCATG---------AAGGTGCTAGTTCCTGC---AGGCAGACGTACTTCCTCTAGGATGAATCCCA------CTGCC-CATTTTTGGGC--------------ATCTATGGATATACCTG---AGAAGGCATTTGGGTATATAGAGGTTTATATGTAAATTTGTATCCTTAA-GTGAGAATGTTATATACTTGTGTGGCAATAACTAGGCATGAGGTACATGTATGTATATTTATATGGAAAAAGAAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604319 258 + 173848474 ATCCT-TAATAATGTCTCCAGACTCAGTCG---GTCATCTT---------------------------------------------------------------CTAATAGGGCATG---------AAGGTGCTAGTTCCTGC---AGGCAGACGTACTTCCTGTAGGATGAATCCCA------CTGCC-CATTTTTGGGC--------------ATCTATGGATATACCTG---AGAAGGCATTTGGGTATATAGAGGTTTATATGTAAATTTGTATCCTTAA-GTGAGAATGTTATATACTTGTGTGGCAATAACTAGGCATGAGGTACAGGTATGTATATTTATATGGAAAAAGAAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312045 258 +   2037526 ATCCT-TAATAATGTCTCCAGACTCAGCTG---GTCATCTT---------------------------------------------------------------CTAATAGGGCATG---------AAGGCGCTAGTTCCTGC---AGGCAGACGTACTTCCTCTAGGATGAATCCCA------CTGCC-CATTTTTGGGC--------------ATCTATGGATATACCTG---AGAAGGCATTTGGGTATATAGAGGTTTATATGTAAATTTATATCCTTAA-GTGAGAATGTTATATACTTGTGTGGCAATAACTAGGCATGCAGTACATGTATGTATATTTATATGGAAAAAGAAAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978481 258 + 122973662 ATCCT-TAATAATGTCTCCAGACTCAGCCA---GTCATCTT---------------------------------------------------------------CTAATAGGGCATG---------AAGGCGCTAGTTCCTGC---AGGCAGACGTACGTCCTCTAGGATGAATCCCA------CTGCC-CATTTTTGGGC--------------ATCTATGGATATACCTG---AGAAGGTATTTGGGTATATAGAGGTTTATATGTAAATTTGTATCCTTAA-GTGAGAATGTTATATACTTGTGTGGCAATAACTAGGCATGCGGTACATGTATGTATATTTATATGGAAAAAGAAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30856682 257 + 172585720 ATCCT-TAATAATGTCTCCAGACTTAGCCG---GTCATCTT---------------------------------------------------------------CTAAAACGGCATG---------AAGGTGCTAGTTCCCGC---AGGCAGACATACTTCCTAT-GGATAAATCCCA------CTGCC-CATTTTTGGGC--------------ATCTATGGGTATACCTG---AGAAGGCATTTGGGTATATAGAGGTTTATACATAAATTTACATTCTTAA-ATGAGAATGTTATATACTTGTGTGGCAATAACTAGGCATGCGGTACATGCGTGTATATTTATATGGAAAAAGAAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146164 257 - 170955103 ATCCT-TAATAATGTCTCCAGACTCAGCCG---GTCATCTT---------------------------------------------------------------CTAAAACGGCATG---------AAGGTGCTAGTTCCCGC---AGGCAGACATACTTCCTAT-GGATGAATCCCA------CTGCC-CATTTTTGGGC--------------ATCTATGGGTATACCTG---AGAAGGCATTTGGGTATATAGAGGTTTATACATAAATTTACATTCTTAA-GTGAGAATGTTATATACTTGTGTGGCAATAACTAGGCATGCGGTACATGCGTGTATATTTATATGGAAAAAGAAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395389 257 +   1495729 ATCCT-TAATAATGTCTCCAGACTCAGCCG---GTCATCTT---------------------------------------------------------------CTGAAACGGCATG---------AAGGTGCTAGTTCCCAC---AGGCAGACATACTTCCTAT-GGATGAATCCCA------CTGCC-CATTTTTGGGC--------------ATCTATGGGTATACCTG---AGAAGGCATTTGGGTATATAGAGGTTTATACATAAATTTACATTCTTAA-GTGAGAATGTTATATACTTGTGTGGCAATAACTAGGCATGCGGTACATGCATGTATATTTATATGGAAAAAGAAAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497191 257 -    863181 ATCCT-TAATAATGTCTCCAGACTCAGCCG---GTCATCTT---------------------------------------------------------------CTAAAATGGCATG---------AAGGTGCTAGTTCCCGC---AGGCAGACATACTTCCTAT-GGATGAATCCCA------CTGCC-CATTTTTGGGC--------------ATCTATGGGTATACCTG---AGAAGGCATTTGGGTATATAGAGGTTTATACATAAATTTACATTCTTAA-GTGAGAATGTTATATACTTGTGTGGCAATAACTAGGCATGCGGTACATGTTTGTATATTTATATGGAAAAAGAAAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29645674 257 -  71996105 ATCCT-TAATAATGTCTCCAGACTCAGCCG---GTCATCTT---------------------------------------------------------------CTAAAACGGCATG---------AAGGTGCTAGTTCCTGC---AGGCAGACATACTTCCTAT-GGATGAATCCCA------TTGCC-CATTTTTGGGC--------------ATCTATGGGTATACCTG---AGAAGGCATTTGGGTATATAGAGGTTTATACATAAATTTACATTCTTAA-GTGAGAATGTTGTATACTTGTGTGGCAATAACTAGGCATGCGGTACATGTATGTATATTTACATGGAAAAAGAAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364109 257 -    735854 ATCCT-TAATAATGTCTCCAGACTCAGCCG---GTCATCTT---------------------------------------------------------------CTAAAACGGCATG---------AAGGTGCTAGTTCCCAC---AGGCAGACATACTTCCTAT-GGATGAATCCCA------CTGCC-CATTTTTGGGC--------------ATCTATGGGTATACCTG---AGAAGGCATTTGGGTATATAGAGGTTTATACATAAATTTACATTCTTAA-GTGAGAATGTTATATACTTGTGTGGCAATAACTAGGCATGCGGTACATGCGTGTATATTTATATGGAAAAAGAAAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     284048 257 -   1829203 ATCCT-TAATAATATCTCCAGTCTCAGCCG---GTCATCTT---------------------------------------------------------------CTAAAACAGCATG---------AAGGTGCTAGTTCCTGC---AGGCAGACATACTTCCTAT-GGATGAATCCCA------CTGCC-CATTTCTGGGC--------------ATCTATGGGTATACCTG---AGAAGGCATTTGGGTATATAGAGGTTTATACATAAATTTACATTCTTAA-GTGAGAATGTTACATACTTATGTGGCAATAACTAGGCATGCAGTACATGTATGTATATTTATATAGAAAAAGAAAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30483950 246 + 171630274 ATCCT-TAATAATGTCTCCAGACTCAGCCA---GTTGTTTT---------------------------------------------------------------CTAATAGGGCATG---------AAAGTGCCACTTTCTGC---AGGCAGACATACTTCCTCTAGGATGAACCCCA------CTGCC-CACTTTTAGGC--------------ATCTGTGGGTATACCTG---AGAATGTATTTGAGTATGTTGAAGTTTATATGTAAATTTACGTCTTTAA-GTGAAAATGTTATATATTTGTATGGCAATATCTAG---------GCATGTATGTATTTTTATATGGGAAAAGAA---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290033 255 +    515838 ATCCT-TAATAATGTCTCCAGACTCAGCCA---GTTGTCTT---------------------------------------------------------------CTACTAGGGCATG---------AAGGTGCCACCTTCTGC---AGGCAGACATACTTCCTCTAGGATGAAACCCA------CTGCC-CACTTTTGGGC--------------ATCTATGGGTATATCTG---AGAATGCATTTGAATATGTTGAAGTTTATATGTAAATTTACATACTTAA-GTGAAAATGTTATATATTTGTATGGCAATATCTAGGCATGTGGTGCATGTATGTATTTTTATATAGGAGAAGAA---
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919169 251 -   1771730 ATCCT-TAATAATGTCTCCAGTCTCAGCCG---GTTATCTT---------------------------------------------------------------CTAATAGGGCATG---------GAGGTGCCACTTTCT-------GCAGACATACTTCCTCTAGGATGAACCCCA------CTGCC-CACTTTTGGGC--------------ATCTATGGGTATACCTG---AGAATGCATTTGAATATGTTGAAGTTTATATGTAAATTTACATCCTTAA-GTGAAAATGTTATATATTTGTATGGCAATATCTAGGCATGTGGTGCATGTATGTATTTTTATATGGGAAAAGAA---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100235 253 -    486031 AT-CT-TAATAATGTCTCCAGACTCAGCCG---GTTGTCTT---------------------------------------------------------------CTAATAGGGCATG---------AAGGTGCCACTTTCTGC---AGGCAGACATACTTCCTCTAGGATGAACCCTA------CTACC-CACTTTTGGGC--------------ATCTATGGGTATACCTG---AGAATGCATTTGAGTATGTTGAAG-TTATATGTAAATTTACATCCTTAA-GTGAAAATGTTATGTATTTGTATGGCAATATCGAGGCATGTGGTGCACATATGTATTTTTACATGGGAAAAGAA---
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           335062 335 +  18854210 CTCCT-TAATGATGCCTTAAG--TCAGCCT---GTCATCTTGTTCTGCCACTTCCCatagaccagcggttctcaacctatgggttgtgacccacgggaactatattaaagggtcgtggcattaggaaggttgagaaccactgcCATAGACAGATACAAATTCTGTAGCATTG--CCCAAAGGTGCTATG-TATGGATGAGT--------------ATTTACGGCTATACCTG---AGAATGCACCTGTGTATGTGCAAGTTTCCATGTGAATTTATGTCCTTAATGTGAGAATGTTATACGTTTATATGG-AATAACTAGGCATGTGGTCCATGTGTGTATACTTTGGTGAGAAAAGGGAAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58113701 257 -  94987271 GTCTTCTAATGATGTCCCCAGA--CAGCCA----TCTTTTT---------------------------------------------------------------CTAACAAGGCCTT---------GAGGAGCAACTTCCCAC---ATAGAGACTTGGATCCGCTCAGATGGACCCCA------CTGCTGCACAAGTGGGTA------------GATCTACAGCACTATCTG---AGAACACATTTGAGCATTTGTACATTTATATATGA--CTGTACCCTAAA-CTGAGAAAGTGGTTTATTTTCACGTCAATAACTAGGTACGTGGTGTATGGATGAATGTCTATGGGGAAGAAAAAAGT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26353437 204 +  26524999 CCCCT-TCGCGATGTCCCCAGACTCAG-----------------------------------------------------------------------------CT----GGGCACA---------GAGGTCCCCGCTCCCAC---AGGCGGACATACTTCCTCTGGGATGGG-CCCA------CCACC-CACACCTGGTC--------------CACTGCTGGCAGATATGGTTGGAGGGCATGAGGG---GTTCAGGTGGAC-CATGAGCCTGGGT-------GTGACAATGCCATCGGTGTGTG-GGCAGC-----GACATGTGCCA-AGGTATG------------------------
i canFam3.chr35            C 0 I 4
s dasNov3.JH567297            45766 254 +     53444 ---CT-TCAAGATGCCTCCAGCCTCATCTGGCTGCCACCTT---------------------------------------------------------------CTAA------ATG---------GAAGTGCCAGTTCCCAC---AG---GAGCTACTTCCTCGAGGACGGGGCCCA------CTGTC-CACTGCTGGGCACTGCTGGGGGGGCATCCGTGGCTACA-CTG---AGGATGGAATGGGGTATGTGAAGGGTCACAGGTGACTCTATGTCCTTGATATGACAATGCTGTGTATCTGTATGGCAATCGCTAGGCATGTG---------TGGTCATCTTTGTAGGAAAAGAGAAG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e proCoq1.NW_012149775v1     194083 257 -   1411461 I

a score=1086327.000000
s hg38.chr6_GL000254v2_alt  1501426 71 +   4827813 AGAGAAACTATATTGCTTACCTTATTAGAGTGCTTCTGATGTCCT---AGGAGAAA--GAGATACCAGAAATTCAG
s panTro5.chr6             30370248 71 + 175400573 AGAGAAACTATATTGCTTACCTTATTAGAGTGCTTCTGATGTCCT---AGGAGAAA--GAGATACCAGGGATTCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604577 71 + 173848474 AGAGAAACTATATTGCTTACCTTATTAGAGTGCTTCTGATGTCCT---AGGAGAAA--GAGATACCAGGGATTCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312303 70 +   2037526 AGAGAAACTATATTGCTTACCTTATTAGAGTGCTTCTGATGTCCT---A-GAGAAA--GAGATACCAGGGATTCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978739 71 + 122973662 AGAGAAACAATATTGCTTACCTTATTAGAGTGCTTCTGATGTCCT---AGGAGAAA--GAGATACCAGGGATTCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30856939 71 + 172585720 AGAGAAATTATATTGCTTACCTTATTAGAGTGCTTCTGATATCCT---AGGAGAAA--GAGAAACCAGGGATTCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146421 71 - 170955103 AGAGAAATTATATTGCTTACCTTATTAGAGTGCTTCTGATATCCT---AGGAGAAA--GAGAAACCAGGGAttcag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395646 71 +   1495729 AGAGAAATTATATTGCTTACCTTATTAGAGTGCTTCTGATATCCT---AGGAGAAA--GAGAAACCAGGGATTCAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497448 71 -    863181 AGAGAAATTATATTGCTTACCTTATTAGAGTGCTTCTGATATCCT---AGGAGAAA--GAGAAACCAGGGATTCAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29645931 71 -  71996105 AGAGAAACTATATTGCTTACCTTATTAGAGTGCTTCTGATATCCT---AGGAGAAA--GAGAAACCAGGGATTCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364366 71 -    735854 AGAGAAATTATATTGCTTACCTTATTAGAGTGCTTCTGATATCCT---AGGAGAAA--AAGAAACCAGGGAttcag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     284305 71 -   1829203 AGAGAAACTATATTGCTTACCTTATTAGAGTGCTCCTGATATCCT---AGGAGAAA--GAGATACCAGGGATTCAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484196 71 + 171630274 AGAGAAACTATATTGCTTACCTGATTAGAGTGCTTCTGATATCCT---AGGAGAAA--GAGATACCAGGGATTCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290288 71 +    515838 AGAGAAACTATATTGCTTACCTTATTAGAGTGCTTCTGATATCCT---AGGAAAAA--GAGATACCAGGGATTCAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919420 71 -   1771730 AGAGAAACTATATTGCTTACCTTATTAGAGTGCTTCTGATATCCT---AGGAGAAA--GAGATACCAGGGATTCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100488 71 -    486031 AGAGGAACTATGTTGCTTACCTTATTAGAGTGCTTCTGATATCCT---AGGAGAAA--GAGATACCAGGGATTCAG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     194340 71 -   1411461 AGAGAAACCACACTGCTTACCTTATTAGAGTGCTTCTGATATCCT---AGGGGGGA--GAGAGAGAAGGGATTCAG
i proCoq1.NW_012149775v1   I 257 C 0
s otoGar3.GL873550           335397 70 +  18854210 AGAGGAACTATATCACCTACCTTATTAGCGTGCTTCTGATATCCT---ATGGGAGA--GAGACAG-AGGCATTCAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58113958 71 -  94987271 --AGATACTTTATCACTAACCTTATTAGAGTGCTTCTGATATCCTGAGAGGGGAAA--GGAAGAA-AGGAAAGgag
i mm10.chr17               C 0 I 102
s canFam3.chr35            26353645 73 +  26524999 AGGATAGGCGTGTGGCTCACCTTATCAGAGTGCTTCTGACGCCCT---AGGAGAAATGGGGGGAGCAGGAGTTCAG
i canFam3.chr35            I 4 I 33
s dasNov3.JH567297            46020 68 +     53444 AGTGATGCTCT-CTGCTTACCTTA--AGAGTGCTTCTGATATCCT---AGGAGAAA--GGGAGAGGAGGGATTCAG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I

a score=170435.000000
s hg38.chr6_GL000254v2_alt  1501497 13 +   4827813 TTTCCAGCTTCTC
s panTro5.chr6             30370319 13 + 175400573 TTTCCAGCTTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604648 13 + 173848474 TTTCCAGCTTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312373 13 +   2037526 TTTCCAGCTTCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978810 13 + 122973662 TTTCCAGCttctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857010 13 + 172585720 TTTCCAGCTTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146492 13 - 170955103 tttccagcttctc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395717 13 +   1495729 TTTCCAGCTTCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497519 13 -    863181 TTTCCAGCTTCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646002 13 -  71996105 TTTCCAGCTTCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364437 13 -    735854 tttccagcttctc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     284376 13 -   1829203 TTTCCAGcttctc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484267 13 + 171630274 CTTCCAGCCTCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290359 13 +    515838 TTTCCAGCTTCTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919491 13 -   1771730 TTTCCAACCTCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100559 13 -    486031 TTTCCAGCCTCTC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     194411 13 -   1411461 TTTCCAGGGTCTC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           335467 13 +  18854210 TTTCCAGTTTCTC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e mm10.chr17               58114029 102 -  94987271 I
e dasNov3.JH567297            46088  0 +     53444 C
e canFam3.chr35            26353718 33 +  26524999 I

a score=100259.000000
s hg38.chr6_GL000254v2_alt  1501510  9 +   4827813 C-TTTCCATt
s panTro5.chr6             30370332  9 + 175400573 C-TTTCCATt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604661  9 + 173848474 C-TTTCCATt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312386  9 +   2037526 C-TTTCCATt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978823  9 + 122973662 c-tttccatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857023  9 + 172585720 C-TTTCCATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146505  9 - 170955103 c-tttccatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395730  9 +   1495729 C-TTTCCATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497532  9 -    863181 C-TTTCCATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646015  9 -  71996105 C-TTCCCATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364450  9 -    735854 c-tttccatt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     284389  9 -   1829203 c-tttccatt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484280  9 + 171630274 C-TTCCCATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290372  9 +    515838 C-TTCCCAtt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919504  9 -   1771730 C-TTCCCAtt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100572 10 -    486031 CTTTCCCATT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           335480  9 +  18854210 C-TTCCCATT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e mm10.chr17               58114029 102 -  94987271 I
e dasNov3.JH567297            46088  0 +     53444 C
e proCoq1.NW_012149775v1     194424  0 -   1411461 C
e canFam3.chr35            26353718 33 +  26524999 I

a score=-66.000000
s hg38.chr6_GL000254v2_alt  1501519 5 +   4827813 tttct
s panTro5.chr6             30370341 5 + 175400573 tttct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604670 5 + 173848474 tttct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312395 5 +   2037526 tttct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978832 5 + 122973662 tttct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857032 1 + 172585720 T----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146514 1 - 170955103 t----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395739 1 +   1495729 T----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497541 1 -    863181 T----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646024 5 -  71996105 TTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364459 1 -    735854 t----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     284398 5 -   1829203 tttct
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484289 5 + 171630274 TTCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290381 5 +    515838 ttcct
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919513 5 -   1771730 ttcct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100582 5 -    486031 TTTCT
i aotNan1.NW_018496901v1   C 0 I 47
e micMur3.chr6               375272 2377 + 123392446 I
e mm10.chr17               58114029 102 -  94987271 I
e dasNov3.JH567297            46088 0 +     53444 C
e proCoq1.NW_012149775v1     194424 0 -   1411461 C
e canFam3.chr35            26353718 33 +  26524999 I
e otoGar3.GL873550           335489 0 +  18854210 C

a score=138473.000000
s hg38.chr6_GL000254v2_alt  1501524 50 +   4827813 -----ttcc----tttctttttc-------------------tacttttat----tttAtt---------------tattt------------tttatttg-cttg-tttg
s panTro5.chr6             30370346 46 + 175400573 -----ttcc----tttctttttt-------------------tacttttat----tttatt---------------tattt------------ttt----g-tttg-tttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604675 46 + 173848474 -----ttcc----tttctttttt-------------------tacttttat----tttatt---------------tattt------------ttt----g-tttg-tttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312400 49 +   2037526 -----ttcc----tttctttttc-------------------tacttttat----tttAtt---------------tattt------------ttg-tttg-cttg-tttg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978837 46 + 122973662 -----tttc----tttctttttt-------------------tacttttAT----tttatt---------------tattt------------ttt----g-tttg-tttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857033 47 + 172585720 -------------TTTCTTTTTT------------------AAATTTTTATTTTAtttatt---------------tattt------------ttt----g-tttg-tttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146515 47 - 170955103 -------------tttctttttt------------------aaatttttattttAtttatt---------------tattt------------att----t-tttg-tttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395740 43 +   1495729 -------------TTTCTTTTTT------------------AAATTTTTAT----tttatt---------------tattt------------att----t-tttg-tttg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497542 43 -    863181 -------------TTTCTTTTTT------------------AAATTTTTAT----tttatt---------------tattt------------att----t-tttg-tttg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646029 63 -  71996105 -----TTTCTTTCtttctttttt------------------aaatttttat----tttatt---------------tattttttgtttgtttgttt----g-tttg-tttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364460 43 -    735854 -------------tttctttttt------------------aaatttttat----tttATT---------------TATTT------------Att----t-tttg-tttg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     284403 50 -   1829203 -----tttctttctttctttttt------------------AAATTTTTAt----ttta-t---------------tattg------------ttt----g-tttg-tttg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484294 39 + 171630274 TTTATTTTCTTTCTTTCCttttt-----------------------------------------------------ttttt------------gtt----t-tttg-ttt-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290386 87 +    515838 tttattttctttctttcttttttttttttttttttttgttgttgttgttgt----t--gttgttgttggttttttgttttt------------gtt----t-tttgtttt-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919518 70 -   1771730 tttattttctttccttccttttt----ttgtttttttgtttttgtttttat----ttggtt---------------tattt------------gtt----tgtttg-ttt-
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e mm10.chr17               58114029 102 -  94987271 I
e dasNov3.JH567297            46088  0 +     53444 C
e proCoq1.NW_012149775v1     194424  0 -   1411461 C
e canFam3.chr35            26353718 33 +  26524999 I
e otoGar3.GL873550           335489  0 +  18854210 C
e aotNan1.NW_018496901v1     100587 47 -    486031 I

a score=490468.000000
s hg38.chr6_GL000254v2_alt  1501574 48 +   4827813 tttgtttgagaaagggtctcactctggtgcccaggctggaatacagtg
s panTro5.chr6             30370392 48 + 175400573 tttgtttgagaaagggtctcactctggtgcccaggctggaatatagtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604721 48 + 173848474 tttgtttgagaaagggtctcactctggtgcccaggctggaatatagtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312449 48 +   2037526 tttgtttgagaaagggtctcactctggtgcccaggctggaatacagtg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978883 48 + 122973662 tttgtttgagaaagggtctcactctggtgcccaggctggaatacagtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857080 48 + 172585720 tttgtttgagaaagggtctcactctggtgcccaggctggaatacagtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146562 48 - 170955103 tttgtttgagaaagggtctcactccggtgcccaggctggaatacagtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395783 48 +   1495729 tttgtttgagaaagggtctcactccggtgcccaggctggaatacagtg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497585 48 -    863181 tttgtttgagaaagggtctcactccggtgcccaggctggaatacagtg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646092 48 -  71996105 tttgtttgagaaagggtctcactccggtgcccaggctggaatacagtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     364503 48 -    735854 tttgtttgagaaagggtctcactccggtgcccaggctggaatacagtg
i manLeu1.NW_012107142v1   C 0 I 15063
s colAng1.NW_012115577v1     284453 48 -   1829203 tttgtttgagaaagggtctcactccggtgcccaggctggaatacagtg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484333 41 + 171630274 tttgtttgagaaagagtctcact-------ccagactgtagtgcagtg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290473 48 +    515838 tttgtttgaggaagggtctcactccggtgaccagactggagtgcagtg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919588 48 -   1771730 tttatttgagaaagggtctcactctggtgcccagactggagtgcagtg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100634 48 -    486031 tttgtttgagaaagggtctcactctggtgcccagactggagtgcagtg
i aotNan1.NW_018496901v1   I 47 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e mm10.chr17               58114029 102 -  94987271 I
e dasNov3.JH567297            46088  0 +     53444 C
e proCoq1.NW_012149775v1     194424  0 -   1411461 C
e canFam3.chr35            26353718 33 +  26524999 I
e otoGar3.GL873550           335489  0 +  18854210 C

a score=323601.000000
s hg38.chr6_GL000254v2_alt  1501622 36 +   4827813 gcgtgatcatggctcactgcatactcaacctcctgg
s panTro5.chr6             30370440 36 + 175400573 gtgtgatcacggctcactgcagcctcaacctcctgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604769 36 + 173848474 gtgtgatcacggctcactgcagcctcaacctcctgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312497 36 +   2037526 gcgtgatcatggctcactgcagcctcaacctcctgg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978931 36 + 122973662 gcgtgatcacggctcactgcagcctcaacctcctgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857128 36 + 172585720 gcgtgatcacagctcactgcagcctcaacctcctgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146610 36 - 170955103 gcgtgatcacagctcactgcagcctcaacctcctgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395831 36 +   1495729 gcgtgatcacggctcactgcagcctcaacctcctgg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497633 36 -    863181 gcgtgatcacggctcactgcagcctcaacctcctgg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646140 36 -  71996105 gtgtgatcacggctcactgcagcctcaacctcctgg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     284501 36 -   1829203 gcgtgatcacggctcactgcagcctcaacctcctgg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484374 36 + 171630274 gtgtgatcatggctcactgcagcctcaacctcgtgg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290521 36 +    515838 gtataatcatggctcactacagcctaaaccccctgg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919636 36 -   1771730 gtgtaatcatggctcactacagcctcaaccccctgg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100682 36 -    486031 gtgtgatcatggctcactgcagcctcaacctcctgg
i aotNan1.NW_018496901v1   C 0 I 8
e micMur3.chr6               375272 2377 + 123392446 I
e mm10.chr17               58114029 102 -  94987271 I
e dasNov3.JH567297            46088  0 +     53444 C
e proCoq1.NW_012149775v1     194424  0 -   1411461 C
e canFam3.chr35            26353718 33 +  26524999 I
e otoGar3.GL873550           335489  0 +  18854210 C
e manLeu1.NW_012107142v1     364551 15063 -    735854 I

a score=54926.000000
s hg38.chr6_GL000254v2_alt  1501658 11 +   4827813 gctcaagggat
s panTro5.chr6             30370476 11 + 175400573 gctcaagggat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604805 11 + 173848474 gctcaagggat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312533 10 +   2037526 gctcaa-ggat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978967 11 + 122973662 gctcaagggat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857164 11 + 172585720 gctcaagggat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146646 11 - 170955103 gctcaagggat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395867 11 +   1495729 gctcaagggat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497669 11 -    863181 gctcaagggat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646176 11 -  71996105 gctcaaaggat
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     284537 11 -   1829203 gctcaagggat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484410 11 + 171630274 ctttatgcgat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290557 11 +    515838 ccttgtgtgat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919672 11 -   1771730 ccttatgccat
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e mm10.chr17               58114029 102 -  94987271 I
e dasNov3.JH567297            46088  0 +     53444 C
e proCoq1.NW_012149775v1     194424  0 -   1411461 C
e canFam3.chr35            26353718 33 +  26524999 I
e otoGar3.GL873550           335489  0 +  18854210 C
e aotNan1.NW_018496901v1     100718  8 -    486031 I
e manLeu1.NW_012107142v1     364551 15063 -    735854 I

a score=340322.000000
s hg38.chr6_GL000254v2_alt  1501669 41 +   4827813 cctcctacctcagcatcttgagtagctgggactacaggtgt
s panTro5.chr6             30370487 41 + 175400573 cctcccacctcagcatcctgagtagctgggactacaggtgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604816 41 + 173848474 cctcccacctcagcatcctgagtagctgggactacaggtgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312543 41 +   2037526 cctcctacctcagtatcttgagtagctgggactacaggtat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74978978 41 + 122973662 cctcccacctcagcatcctgagtagctgggactacaggtgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857175 41 + 172585720 cctcccacctcagcatcctgagtagctgggactacaagggt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146657 41 - 170955103 cctcccacctcagcatcctgagtagctgggactacaagggt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395878 41 +   1495729 cctcccacctcagcatcctgagtagctgggactacaagggt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497680 41 -    863181 cctcccacctcagcatcctgagtagctgggactacaagggt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646187 41 -  71996105 cctcccacctcagcatcctgagtagctgggactacaagggt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     284548 41 -   1829203 cctcccacctcagcatcctgggtagctgggactacaacggt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484421 41 + 171630274 tctcctacctcagcctactgagtagctgggactacaggtat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290568 41 +    515838 cctcccacctcagcatcctgagtagctgggactgcaggtgt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919683 41 -   1771730 cttcccacctcagcatcctgagtagctgggacgacaagtgt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100726 39 -    486031 -cctccacttcagcatcctgcgtc-ctgagactacaggtat
i aotNan1.NW_018496901v1   I 8 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e mm10.chr17               58114029 102 -  94987271 I
e dasNov3.JH567297            46088  0 +     53444 C
e proCoq1.NW_012149775v1     194424  0 -   1411461 C
e canFam3.chr35            26353718 33 +  26524999 I
e otoGar3.GL873550           335489  0 +  18854210 C
e manLeu1.NW_012107142v1     364551 15063 -    735854 I

a score=373433.000000
s hg38.chr6_GL000254v2_alt  1501710  80 +   4827813 ttgtc------accatgcctggctaat-------------tttctttttttttttttttttttt-------tt------gtagagatggggttttgttatgttgcccaggct
s panTro5.chr6             30370528  83 + 175400573 ttgtc------accatgcctggctaat-------------tttctttctttttttttttttttt----gtttt------gtagagatggggttttgttatgttgcccaggtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604857  79 + 173848474 ttgtc------accatgcctggctaat-------------tttctttcttttttttttttgtt--------tt------gtagagatggggttttgttatgttgcccaggtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312584  87 +   2037526 ttgtc------accatgcctggctaat-------------tttcttttttctttttttttttttttttttttt------gtagagatggggttttgttatgttgcccaggct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74979019 100 + 122973662 ttgtc------accatgcctggctaattttCTtttctttctttctttcttttttttttttttttttttttttg------gtagcgatggggttttgttatgttgcccaggct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857216  72 + 172585720 gtgc-------accatgcctggctaa--------------------------tttttttttttt-------ttgggggggtagagatgggattttgttatgttgcccaggTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146698  79 - 170955103 gtgccaccatgaccatgcctggctaa--------------------tttttttttttttttttt-------tt------gtagagatgggattttgttatgttgcccaggTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395919  67 +   1495729 gtgcc------accatgcctggctaa--------------------------tttttttttttt-------tt------gtagagatgggattttgttatgttgcccaggTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497721  72 -    863181 gtgcc------accatgcctggctaa---------------------ttttttttttttttttt-------tt------gtagagatgggattttgttatgttgcccaggTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646228  78 -  71996105 gtgcc------accatgcctggctaat-------------tt--tttttttttttttttttttt-------tt------gtagagatgggattttgttatgttgcccaggtt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     284589  73 -   1829203 gtgcc------accatgcctggctat--------------------tttttttttttttttttt-------tt------gtagagatggaattttgttatgttgcccaggtt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484462  65 + 171630274 gtgcc--------catgcctggcta-------------------------tttttttttttttt-------tt------gtagaaatagg-ttttgttatgttgcccaggct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290609  61 +    515838 gtgcc--------catgcctggcta-----------------------------attttttttt-------ct------gtagaaatagg-ttttgttatgctgccctggct
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919724  64 -   1771730 gtgcc--------catgcctggcta--------------------------atttttttttttt-------tt------gtagaaatagg-ttttgttatgttgcccaggct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100765  74 -    486031 gtgcc--------catgcctggctaat----------------ttttttttttttttttttttt-------tt------gtagaaatagg-ttttgttatgttgcccaggct
i aotNan1.NW_018496901v1   C 0 C 0
s dasNov3.JH567297            46088   9 +     53444 GTGTC------ACCA-------------------------------------------------------------------------------------------------
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e mm10.chr17               58114029 102 -  94987271 I
e proCoq1.NW_012149775v1     194424   0 -   1411461 C
e canFam3.chr35            26353718  33 +  26524999 I
e otoGar3.GL873550           335489   0 +  18854210 C
e manLeu1.NW_012107142v1     364551 15063 -    735854 I

a score=12000.000000
s hg38.chr6_GL000254v2_alt  1501790 1 +   4827813 C
s panTro5.chr6             30370611 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604936 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312671 1 +   2037526 C
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74979119 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857288 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146777 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395986 1 +   1495729 C
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497793 1 -    863181 C
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646306 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     284662 1 -   1829203 C
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484527 1 + 171630274 C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290670 1 +    515838 C
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919788 1 -   1771730 C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100839 1 -    486031 C
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     194424 1 -   1411461 C
i proCoq1.NW_012149775v1   C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e mm10.chr17               58114029 102 -  94987271 I
e dasNov3.JH567297            46097 0 +     53444 C
e canFam3.chr35            26353718 33 +  26524999 I
e otoGar3.GL873550           335489 0 +  18854210 C
e manLeu1.NW_012107142v1     364551 15063 -    735854 I

a score=89243.000000
s hg38.chr6_GL000254v2_alt  1501791 8 +   4827813 CTCCCACT
s panTro5.chr6             30370612 8 + 175400573 CTCCCACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604937 8 + 173848474 CTCCCACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312672 8 +   2037526 CTCCCACT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74979120 8 + 122973662 CTCCCACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857289 8 + 172585720 CTCCCACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146778 8 - 170955103 CTCCCAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395987 8 +   1495729 CTCCCAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497794 8 -    863181 CTCCCACT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646307 8 -  71996105 CTCCCACT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     284663 8 -   1829203 CTCCCACT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484528 8 + 171630274 TTCCTACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290671 7 +    515838 CTCCTAC-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919789 8 -   1771730 TTCCTACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100840 8 -    486031 TTCCTACT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     194425 8 -   1411461 CTCCCACT
i proCoq1.NW_012149775v1   C 0 C 0
s mm10.chr17               58114131 8 -  94987271 CTCCCACT
i mm10.chr17               I 102 C 0
s dasNov3.JH567297            46097 8 +     53444 CTCCCACT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e canFam3.chr35            26353718 33 +  26524999 I
e otoGar3.GL873550           335489 0 +  18854210 C
e manLeu1.NW_012107142v1     364551 15063 -    735854 I

a score=77623.000000
s hg38.chr6_GL000254v2_alt  1501799 6 +   4827813 TTTCTT
s panTro5.chr6             30370620 6 + 175400573 TTTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604945 6 + 173848474 TTTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312680 6 +   2037526 TTTCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74979128 6 + 122973662 TTTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857297 6 + 172585720 TTTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146786 6 - 170955103 TTTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     395995 6 +   1495729 TTTCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497802 6 -    863181 TTTCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646315 6 -  71996105 TTTCTT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     284671 6 -   1829203 TTTCTT
i colAng1.NW_012115577v1   C 0 I 23
s calJac3.chr4             30484536 6 + 171630274 TTTTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290678 6 +    515838 TTTTTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919797 6 -   1771730 TTTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100848 6 -    486031 TTTTTT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     194433 6 -   1411461 TTTCTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           335489 6 +  18854210 TTTCTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58114139 6 -  94987271 TTTGTT
i mm10.chr17               C 0 C 0
s dasNov3.JH567297            46105 6 +     53444 TGCCTT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e canFam3.chr35            26353718 33 +  26524999 I
e manLeu1.NW_012107142v1     364551 15063 -    735854 I

a score=37281.000000
s hg38.chr6_GL000254v2_alt  1501805 3 +   4827813 ATG
s panTro5.chr6             30370626 3 + 175400573 ATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604951 3 + 173848474 ATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312686 3 +   2037526 ATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74979134 3 + 122973662 ATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857303 3 + 172585720 ATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146792 3 - 170955103 ATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     396001 3 +   1495729 ATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497808 3 -    863181 ATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646321 3 -  71996105 ATG
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30484542 3 + 171630274 ATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290684 3 +    515838 ATG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919803 3 -   1771730 ATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100854 3 -    486031 ATG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     194439 3 -   1411461 ATG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           335495 3 +  18854210 AAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58114145 3 -  94987271 ATG
i mm10.chr17               C 0 C 0
s dasNov3.JH567297            46111 3 +     53444 ATA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e canFam3.chr35            26353718 33 +  26524999 I
e colAng1.NW_012115577v1     284677 23 -   1829203 I
e manLeu1.NW_012107142v1     364551 15063 -    735854 I

a score=501193.000000
s hg38.chr6_GL000254v2_alt  1501808 45 +   4827813 ACTGGAAAAGACAA--AATA------TATTTCTAG--------CCCTGGACAGGAAAAGGA-----
s panTro5.chr6             30370629 45 + 175400573 ACTGGAAAAGACAA--AATA------TATTTCTAG--------CCCTGGACAGGAAAAGGA-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604954 45 + 173848474 ACTGGAAAAGACAA--AATA------TATTTCTAG--------CCCTGGACAGGAAAAGGA-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312689 45 +   2037526 ACTGGAAAAGACAA--AATA------TATTTCTAG--------CCCTGGACAGGAAAAGGA-----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74979137 45 + 122973662 ACTGGAAAAGACAA--AATA------TATTTCTAG--------TCCTGGACAGGAAAAGGA-----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857306 45 + 172585720 ACTGGAAAATACAA--AATA------CATTTCTAG--------CCCTGAACAGGAAAAGGA-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146795 45 - 170955103 ACTGGAAAATACAA--AATA------CATTTCTAG--------CCCTGAACAGGAAAAGGA-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     396004 45 +   1495729 ACTGGAAAATACAA--AATA------CATTTCTAG--------CCCTGAACAGGAAAAGGA-----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497811 45 -    863181 ACTGGAAAATACAA--AATA------TATTTCTAG--------CCCTGAACAGGAAAAGGA-----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646324 45 -  71996105 ACTGGAAAATACAA--AATA------TATTTCTAG--------CCCTGAACAGGAAAAGGA-----
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     284700 45 -   1829203 ATTAGAAAATACAA--AATA------TATTTCTAG--------CCCTGGACAGGAAAAGGA-----
i colAng1.NW_012115577v1   I 23 C 0
s calJac3.chr4             30484545 45 + 171630274 ACTGGAAAAGACAA--AATA------TATTTCTAG--------CCCTGGACAGGAAAAGGA-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290687 45 +    515838 ACTGGAAAAGACAA--AATA------TATTTCTAA--------TCCTGGACAGGAAAAGGA-----
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919806 45 -   1771730 ACTGGAAAAGACAA--AATA------TATTTCTAG--------CCCTGGACAGGAAAAGGA-----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100857 45 -    486031 ACTGGAAAAGACAA--AATA------TATTTCTAG--------CCCTGGACAGGAAAAGGA-----
i aotNan1.NW_018496901v1   C 0 I 51
s proCoq1.NW_012149775v1     194442 47 -   1411461 ACTAGAAAAAACAA--ACTTTT----CTTTCCCAG--------CCCTGGACAGAAAGAGGA-----
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           335498 41 +  18854210 ACTAAAAAATACCA------------CATTCCTAG--------CCCTGGACAGAAAAAAGA-----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58114148 42 -  94987271 ACCATAAAACCCAA--AATACTGCCGTATTCCCAG--------CCTTGGACA--------------
i mm10.chr17               C 0 C 0
s dasNov3.JH567297            46114 60 +     53444 ACTGGAAAAGACAAACACCA------CACTGCTAGAACAGTGTCCGCGACCTGGGCAAGGACAGTT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e canFam3.chr35            26353718 33 +  26524999 I
e manLeu1.NW_012107142v1     364551 15063 -    735854 I

a score=48763.000000
s hg38.chr6_GL000254v2_alt  1501853 11 +   4827813 TACCAGATGca
s panTro5.chr6             30370674 11 + 175400573 TACCAGATGca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30604999 11 + 173848474 TACCAGATGca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312734 11 +   2037526 TACCAGATGca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74979182 11 + 122973662 TACCAGATGca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857351 11 + 172585720 TACCAGATGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146840 11 - 170955103 TACCAGATGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     396049 11 +   1495729 TACCAGATGTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497856 11 -    863181 TACCGGATGTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646369 11 -  71996105 TACCAGATGTG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     284745 11 -   1829203 TACCAGATGTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484590  7 + 171630274 ---CAGG-GCt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290732  7 +    515838 ---CAGG-GCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919851  7 -   1771730 ---CAAG-GCt
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     194489 11 -   1411461 CACCAGATCca
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           335539 11 +  18854210 CATCAGATCTG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            46174 11 +     53444 CACCCAATCCC
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e mm10.chr17               58114190  0 -  94987271 C
e canFam3.chr35            26353718 33 +  26524999 I
e aotNan1.NW_018496901v1     100902 51 -    486031 I
e manLeu1.NW_012107142v1     364551 15063 -    735854 I

a score=204381.000000
s hg38.chr6_GL000254v2_alt  1501864 20 +   4827813 tagagtcacagagcattagg
s panTro5.chr6             30370685 20 + 175400573 tagagtcacagagcattagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30605010 20 + 173848474 tagagtcacagagcattagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312745 20 +   2037526 tagagtcacagagcattagg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74979193 20 + 122973662 tagagtcacagagaattagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857362 20 + 172585720 tagagtcacagagcattagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146851 20 - 170955103 TAGAGTCACAGAGCATTAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     396060 20 +   1495729 tagagtcacagagcattagg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497867 20 -    863181 TAGAGTCACAGAGCATTAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646380 20 -  71996105 TAGAGTCACAGAGCATTAGG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     284756 20 -   1829203 TAGAGTCACAGAGCATTAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484597 20 + 171630274 agaagtcacagagcattagg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290739 20 +    515838 AGAAGCCACAGAGTATTAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919858 20 -   1771730 agaagtcacagagcattagg
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     194500 20 -   1411461 tagagtcacagagctttagg
i proCoq1.NW_012149775v1   C 0 I 170
s otoGar3.GL873550           335550 18 +  18854210 taaagtcacagtg--ttaga
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58114190  5 -  94987271 ---------------TTAAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26353751 20 +  26524999 tggagtcccagaattgtagg
i canFam3.chr35            I 33 C 0
s dasNov3.JH567297            46185 20 +     53444 TGGAGGCACCATGTGTCAGG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e aotNan1.NW_018496901v1     100902 51 -    486031 I
e manLeu1.NW_012107142v1     364551 15063 -    735854 I

a score=108923.000000
s hg38.chr6_GL000254v2_alt  1501884 20 +   4827813 actcacccatctctgtggat-
s panTro5.chr6             30370705 20 + 175400573 actcacccacctctgtggat-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30605030 20 + 173848474 actcacccacctctgtggat-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312765 20 +   2037526 actcacccacctctgtggat-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74979213 20 + 122973662 actcacccacctctgtggat-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857382 20 + 172585720 actcacccacctctggggat-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146871 20 - 170955103 ACTCACCCACCTCTGGGGAT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     396080 20 +   1495729 actcacccacctctggggat-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497887 20 -    863181 ACTCACCCACCTCTGGGGAT-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646400 16 -  71996105 ACT----CACCTCTGGGGAT-
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     284776 20 -   1829203 ACTCACCCACCTCTGGGGAT-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484617 20 + 171630274 gcttacccatctctaggaat-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290759 20 +    515838 GCTTACCCGTCTCTAGGAAT-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919878 20 -   1771730 gcttacccatctttaggaat-
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           335568 19 +  18854210 gtttactaggct-tggggat-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58114195  2 -  94987271 ----AC---------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26353771 20 +  26524999 gttggcaaggcgtccgggat-
i canFam3.chr35            C 0 I 2
s dasNov3.JH567297            46205 21 +     53444 AGTTACTGCACTTCAGGGGCA
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e proCoq1.NW_012149775v1     194520 170 -   1411461 I
e aotNan1.NW_018496901v1     100902 51 -    486031 I
e manLeu1.NW_012107142v1     364551 15063 -    735854 I

a score=1503199.000000
s hg38.chr6_GL000254v2_alt  1501904 151 +   4827813 cagagcccaaagcctttattttttagataaagatggtgaagtgaccttcccctgctca-ctggaggcaaag-----taagtctcataccaaggtctcctgtttctcagtcctaagag----------------catcattctaagtcatgctgcctttccaATACTTTGTGGG
s panTro5.chr6             30370725 151 + 175400573 cagagcccaaagcctttattttttagatcaagatggtgaagtgaccttcccctgctca-ttagaggcaaag-----taagtctcataccaaggtctcctgtttctcagtccTAAGAG----------------CATCATTCTAAGTCATGCTGCCTTTCCAATACCTTGTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30605050 151 + 173848474 cagagcccagagcctttattttttagataaagatggtgaagtgaccttcccctgctca-ttagaggcaaag-----taagtctcataccaaggtctcctgtttctcagtccTAAGAG----------------CATCATTCTAAGTCATGCTGCCTTTCCAATACCTTGTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312785 151 +   2037526 cagagcccaaagcctttattttttagataaagatggtgaagtgaccttcccctgctca-ctggagacaaag-----taagtctcataccaaggtctcctgtttctcagtccTAAGAG----------------CATCATTCTAAGTCATGCTGTCTTTCCAATACTTTGTGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74979233 151 + 122973662 cagagcccaaagcctttattttttagataaaggtggtgaagtgactttcccctgctca-ttagaggcaaag-----taagtctcataccaaggtctcctgtttcgcagtccTAAGAG----------------CATCATTCTAAGTCATGCTGCCTTTCCAATACCTTGTGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857402 151 + 172585720 cagagcccaaagcctttattttttagatacagatgatgaggtgaccttcccctgctca-ttagaggcaaag-----taagtctcataccaaggtctcctgtttctcagtcctgaggg----------------catccttctaagtcatgctgccTTTCCAATACCTTATGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30146891 151 - 170955103 CAGAGCCCAAAGCCTTTATTTTTTAGATAAAGATGATGAGGTGACCTTCCCCTGCTCA-TTAGAGGCAAAG-----TAAGTCTCATACCAAGGTCTCCTGTTTCTCAGTCCTGAGGG----------------CATCCTTCTAAGTCATGCTGCCTTTCCAATACCTTATGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     396100 151 +   1495729 cagagcccaaagcctttattttttagataaagatgatgaggtgaccttcccctgctca-ttagaggcaaag-----taagtctcataccaaggtctcctgtttctcagtcctgaggg----------------catccttctaagtcatgctgccTTTCCAATACCTTGTGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     497907 148 -    863181 CAGAGCCCAAAGCCTTTATTTTTTAGATAAAGATGATGAGGTGACCTTCCCCTGCTCA-TTAGAGGCAAAG-----TAAGTCTCATACCAAGGT---CTGTTTCTCAGTCCTGAGGG----------------CATCCTTCTAAGTCATGCTGCCTTTCCAACACCTTGTGGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646416 151 -  71996105 CAGAGCCCAAAGCCTTTATTTTTTAGATACAGATGATGAGGTGACCTTCCCCTGCTCG-TTAGAGGCAAAG-----TAAGTCTCATACCAAGGTCTCCTGTTTCTCAGTCCTGAGGG----------------CATCCTTCTAAGTCATGCTGCCTTTCCAATACCTTGTGGG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     284796 151 -   1829203 CGGAGCCCAAAGCCTTTATGTTTTAGATAAAGATGATGAGGTGACCTTCCCCTGCTCA-TTAGAGGCAAAG-----TACGTCTCATACCAAGGTCTCTTGTTTCTCAGTCCTGAGGG----------------CATCCTTCTAAGTCATGCTGCCTTTCCAATACCTTGTGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484637 148 + 171630274 cagagcccagagcctttattttttagatacaggcggtgaaatgaccttcccttgctca-ttagaggcaaag--------gtctcatacgaaggtcttctgtttctcagtcctgaggg----------------catcctgctaagtcatgctgccTTTCCAATGCCTTGCGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290779 127 +    515838 CAGAGCCCAAAGCCTTTATTTTTTAGATTAAGATGGTAAAATGACCTTCCCTTGCTCA-TT-----------------------------AAGTCTTCTTTTTCTCAGTCCTGAGGG----------------CATCCTTCTAAGTCATGCTGCCTTTCCAATGCCTTGTGGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     919898 152 -   1771730 cagagcccaaagcctttattttgtggataaaggtggtgaaatgaccttcccttgctca-ttagaggcaaag----gtaagtctcatatgaaggtcttctgtttctcagtcctgaggg----------------catctttctaagtcatgctgccTTTCCAATGCCTTGTGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     100953 151 -    486031 CAGAG-CCAAAGCCTTTATTTTTTAGATAAAGGTggtgaaatgaccttcccttgctca-ttagaggcaaag----gtaagtctcatacaaaggtcttctgtttctcagtcctgaggg----------------catccttctaagtcacgctgccTTTCCAGTGCCTTGTGGG
i aotNan1.NW_018496901v1   I 51 C 0
s otoGar3.GL873550           335587 152 +  18854210 cagagcacaatcattttattttatagacccaggtagtaaagcaatctgcccctgcttg-ttagagacaaag----ataaatcccataccaaggtctcttgtttctcaggccTGAGGG----------------TATCCCCCTAAATCATGGTGCCATTCTGATGCCTTGTTGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58114197 140 -  94987271 CAGAACCCAGA-CCTTTGTTTCATGGACAGAGTTGATGATACGACCTACTTCTCCCCAGCTATAGGCAAAAGTGAGCAAGTTCTACACCAAAGTCTCTTATTTCCCAGTACCCAGTG----------------CATCTCCCTAAAGCATGCT------------CCTGG----
i mm10.chr17               C 0 C 0
s canFam3.chr35            26353793 164 +  26524999 tggaggccaagccctttatttcatgg-tccatgcagtgaagtgacttgcac--aCCTG-CTGGAGGCCAAG----GCGCATCCCATGC-GGGTCCCCCCACACCTCCATCCAGTGAACCACGAGTGGGCGCCCCCCCACCCCATGTCACGCCGCCATTCCCAGGCCTTGCTGG
i canFam3.chr35            I 2 C 0
s dasNov3.JH567297            46226 142 +     53444 CGGGGTCCACC-CCATTCTTTTACAAACCTGGGTGGGGGCATAACCTGCAGCTGCTAG-TGAGAAGTAAAT---------GCTCACCCCCAGGTCTCAT-TTCCTCAGTGCAGAGTG----------------CTGCC--CTAAACCACGCTGCCCTCCCGGTGCCTTGATG-
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e proCoq1.NW_012149775v1     194520 170 -   1411461 I
e manLeu1.NW_012107142v1     364551 15063 -    735854 I

a score=1170699.000000
s hg38.chr6_GL000254v2_alt  1502055  98 +   4827813 GACCCCAATACCTCTCCTCCAGTGTGAGGAAGTGAAATAGACCAGGACAAACTTCC----TG--ACTGGTGGTTGGTGACATTTAGGTTATAGAGAA----------TGGTTTG
s panTro5.chr6             30370876  98 + 175400573 GACCCCAATATCTCTCCTCCAGTGTGAGGAAGTGAAATAGACCAGGACAAACTTCC----TG--ACTGGTGGTTGGTGACATTTAGGTTATAGAGAA----------TGGtttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30605201  98 + 173848474 GACCCCAATATCTCTCCTCCAGTGTGAGGAAGTGAAATAGACCAGGACAAACTTCC----TG--ACTGGTGGTTGGTGACATTTAGGTTATAGAGAA----------TGGtttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     312936  98 +   2037526 GACCCCAATATCTCTCCTCCAGTGTGAGGAAGTGAAATAGACCAGGACAAACTTCC----TG--ACTGGTGGTTGGTGACATTTAGGTTATAGAGAA----------TGGTTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74979384  98 + 122973662 GACCCCAATACCTCTCCTCCAGTGTGAGGAAGTGAAATGGACCAGGACAAACTTCC----GG--ACTGGTGGTTGGTGACATTTAGGCTATAGAGAA----------TAGtttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857553  98 + 172585720 GACCCCAATATCTCTCCTCCAGTGTGAGGAAGTGAAATAGACCAGCACAAACTTCC----TG--ACTGGTGGATGGTGACATGTAGGCTATAGAGAA----------TGGtttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30147042  98 - 170955103 GACCCCAATATCTCTCCTCCAGTGTGAGGAAGTGAAATAGACCAGCACAAACTTCC----TG--ACTGGTGGATGGTGACATGTAGGCTATAGAGAA----------TGGtttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     396251  98 +   1495729 GACCCCAATATCTCTCCTCCAGTGTGAGGAAGTGAAATAGACCAGCACAAACTTCC----TG--ACTGGTGGATGGTGACATGTAGGCTATAGAGAA----------TGGtttg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     498055  98 -    863181 GACCCCAATATCTCTCCTCCAGTGTGAGGAAGTGAAATAGACCAGCACAAACTTCC----TG--ACTAGTGGATGGTGACATGTAGGCTATAGAGAA----------TGGtttg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646567  98 -  71996105 GACCCCAATATCTCTCCTCCAGTGTGAGGAAGTGAAATAGACCAACACAAACTTCC----TG--ATTGGTGGATGGTGACATGTAGGCTATAGAGAA----------TGGtttg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     284947  98 -   1829203 GACCCCAGTATCTCTCCTCCAGTGTGAGGAAGTGAAATAGACCAGCACAAACTTCC----TG--ACTGGTGGATGGTGACATGTAGGCTATAGAGAA----------TGgttta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484785 100 + 171630274 CACCCTAATGTCTTTCCTCCAGCATGAGGAAGTGAAAT--GCTAGGACAAACTTCCTGACTG--ACTAATGGATGGTGACATTCACATTACAGAGAA----------TGGtttg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           290906 102 +    515838 GACCCTAGTATCTTTCCTCCAGTGTGAGGAAGTGAAATAGACTAGGACAAACTTCCTGAGTG--ACTGGTGGATGGTGACATTTACATTGTAGAGAA----------TGGttta
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     920050 102 -   1771730 GACCCTCATATCTTTCCTCCAGTGTGAGGAAGTGAACTAGACTAGGACAAACTTCCCGACTG--ACTAGTGGATGGTGACATTTACATTATAGAGAA----------TGGtttg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     101104 102 -    486031 GACCCTAATGTCTTTCCTCCAGTGTGAGGAAGTGAAATAGACTAGGACAAACTTCCTGACTG--ACTGATGAATGGTGACATTTACATTACAGAGAA----------TGGtttg
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     194690  98 -   1411461 GACCCCAATATCTCTCCTCCAGCCCAAGGAAGTGAAATAGACCAGGACAAACTTCC----TG--ACTGGTGGATGGTAACATTTAGTTTATAGGGAA----------TGGTTTG
i proCoq1.NW_012149775v1   I 170 I 372
s otoGar3.GL873550           335739  98 +  18854210 GACACCAATATTTCTCCTCCAGTGCAAGGAAGTGAAATAAATGAGGACAAACTTCC----TG--ACCAGCCAATGCTAATATTTAGGTCATGGAGAA----------GGGTTTG
i otoGar3.GL873550         C 0 I 24
s mm10.chr17               58114337 108 -  94987271 AACCCCAATAACTCTCCTCCAGTTCAAGGAAGTGGTACAGTCTAGGAAGAACTTCC----TG--GCCATGGAGGGGAAAGTTTTGCTTTGGAGGCAACACCTGGCACTTGTTTG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26353957  92 +  26524999 GACCCTCATATCGTCCCTCCAGGG-AAGGAGATGACATGCACCGGGA-GAAGTGCC----TGCCACTGGTGGCCCGTGAT------GCAGAATAGCA----------TGCCTTG
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            46368  97 +     53444 GATCCCAAAATCTCTCCCAGAGTGGGAAGAAGTGAAATCTACCAGGATGAACTTCC----TG--GGTGGTGGAGGG-GACACTGAGGTTACAGAAAA----------CAGTTTG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e manLeu1.NW_012107142v1     364551 15063 -    735854 I

a score=185326.000000
s hg38.chr6_GL000254v2_alt  1502153 25 +   4827813 -----------------------------CAACTTACTTAATAC----------------------------------Tttttcaaag
s panTro5.chr6             30370974 24 + 175400573 -----------------------------caacgtacttaatac----------------------------------tttt-caaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30605299 24 + 173848474 -----------------------------caacgtacttaatac----------------------------------tttt-caaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     313034 25 +   2037526 -----------------------------CAACGTACGTAATAC----------------------------------Tttttcaaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74979482 24 + 122973662 -----------------------------caacgtattttatac----------------------------------tttt-caaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857651 24 + 172585720 -----------------------------caatgtacttaatac----------------------------------tttt-caaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30147140 24 - 170955103 -----------------------------caatgtacttaatac----------------------------------tttt-caaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     396349 24 +   1495729 -----------------------------caatgtacttaatac----------------------------------tttt-caaag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     498153 24 -    863181 -----------------------------cactgtacttaatac----------------------------------tttt-caaag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646665 24 -  71996105 -----------------------------caatgtacttaatac----------------------------------tttt-ccaag
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     285045 24 -   1829203 -----------------------------caatgtgcttaatac----------------------------------tttt-caaag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484885 24 + 171630274 -----------------------------caatgtactcaatac----------------------------------tttt-caaag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           291008 24 +    515838 -----------------------------caacgtactcagtac----------------------------------tttt-caaag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     920152 24 -   1771730 -----------------------------caacatactcaatac----------------------------------tttt-tgaag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     101206 24 -    486031 -----------------------------caacgtactcaatac----------------------------------tttt-caaag
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           335861 58 +  18854210 -----------------------------CAAAGTACTTGATACTTAACTtttttctttttctttttctttttttttttttt-tagag
i otoGar3.GL873550         I 24 I 265
s mm10.chr17               58114445 23 -  94987271 -----------------------------CACAGTGTGTGATAC----------------------------------GTCT-CAGG-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26354049 25 +  26524999 ------------------------------GAAATAGCTGGCAA--------------------------------Tgtttt-caaag
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            46465 53 +     53444 CACTGGAAACACTGCCTGCCACTTGTTTGCACAGTACTTGACAC----------------------------------TTTC-CAAAG
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e proCoq1.NW_012149775v1     194788 372 -   1411461 I
e manLeu1.NW_012107142v1     364551 15063 -    735854 I

a score=787248.000000
s hg38.chr6_GL000254v2_alt  1502178 76 +   4827813 tgctactttcacttccatcttactgttggatcctcacaaaagccctgtgaaatatttaaggaaagtatcttcc-cta
s panTro5.chr6             30370998 76 + 175400573 tgctactttcacttccatcttactgttggatcctcacaaaagccctacgaaatatttaaggaaagtatcctcc-cta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30605323 76 + 173848474 tgctactttcacttccatcttactgttggatcctcacaaaagccctacgaaatatttaaggaaagtatcctcc-cta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     313059 76 +   2037526 tgctactttcacttccatcttactgttggatcctcacaaaagccctgtgaaatatttaaggaaagtatcctcc-cta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74979506 76 + 122973662 tgctactttcacttccatcttactgttggatcctcacaaaagccctgtgaaatatttaaggaaagtatcctcc-cta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857675 76 + 172585720 tgctactttcacttccatctcactgttggatcctcacaaaagccctgtgaaatatttaagggaagtatcctcc-ttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30147164 77 - 170955103 tgctactttcacttccatctcactgttggatcctcacaaaagccctgtgaaatatttaagggaagtatCCTCCTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     396373 77 +   1495729 tgctactttcacttccatctcactgttggatcttcacaaaagccctgtgaaatatttaagggaagtatcctcctttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     498177 76 -    863181 tgctacttccacttccatctcactgttggatcctcataaaagccctgtgaaatatttaagggaagtatcctcc-ttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646689 76 -  71996105 tgctactttcacttccatctcactgttggctcctcacaaaagccctgtgaaatatttaagggaagtgttctcc-ctt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     285069 76 -   1829203 tgctactttcacttccatctcactgttggatcctcacaaaagccctgtgaaatatttaagggaagtatcctca-ctt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484909 76 + 171630274 tgctactttcacttccatcttactgttgaatcctcacaaaagccctgtgaaatatttaaggcaagtatcctcc-cta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           291032 76 +    515838 tgctactttcacttccatcttactgttgaatcctcacaaaagtcgtgtgaaatacttaaggcaagtatcctcc-cta
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     920176 76 -   1771730 tgctactttcacttccatcttactgttgaatcctcacaaaagtcgtgtgaaatatttaaggcaagtatcctcc-cta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     101230 76 -    486031 tgctactttcactttcatcttactgttgaatcctcacaaaagccacgtgaaatatttaaggcaagtatcctcc-cta
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           336184 76 +  18854210 tgctacttcaaattccattttactattgtatcctcacaaaagctctgtgagatagttaaggaaagtatcttcc-cta
i otoGar3.GL873550         I 265 C 0
s mm10.chr17               58114468 46 -  94987271 AGCAACTTCCACCTCC-TTTTACTGTCATATCCTCA-----------------------------TTTCCTCT-CCA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26354074 75 +  26524999 tgctactttgtactgtatttttcctttggaccctccccaaa-ccctgagaggttgataaggacggtgtcctcc-ctg
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            46518 38 +     53444 TGCTACTTTCACTTTCATTTTACCGATGGAGCCTCCTA---------------------------------------
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e proCoq1.NW_012149775v1     194788 372 -   1411461 I
e manLeu1.NW_012107142v1     364551 15063 -    735854 I

a score=2346815.000000
s hg38.chr6_GL000254v2_alt  1502254 210 +   4827813 tttggcagatggtggga-cggagaggtggagaCCAGAGAGCAAAAAGTGACCAGGGAACTCTTGGAAAAGCATGAACTAGAATTGAGACTTTCTGGTCCTCTGACCCACCTCCCATCTGGGAT-ACAGAGATGTGTGAGTCAGGGAGACATGGCTTAGGCAAGACAAAGATGCAAGAGTC------ACAGGACAGCACAGGTGGGGCAGGGTTCCGGT
s panTro5.chr6             30371074 210 + 175400573 tttggcagatggtggga-cggagAGGTGGAGACCAGAGAGCAAAAAGTGACCAGGGAACTCTTGGAAAAGCATGAACTAGAATTGAGACCTTCTGGTCCTCTGACCCATCTCCCATCTGGGAT-ACAGAGATGTGTGAGTCAGGGAGACATGGCTTAGGCAAGACAAAGATGCAAGAGTC------ACAGGACAGCACAGGTGGGGCAGGGTTCTGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30605399 210 + 173848474 tttggcagatggtggga-cggagAGGTGGAGACCAGAGAGCAAAAAGTGACCAGGGAACTCTTGGAAAAGCATGAACTAGAATTGAGACCTTCTGGTCCTCTGACCCATCTCCCATCTGGGAT-ACAGAGATGTGTGAGTCAGGGAGACATGGCTTAGGCAAGACAAAGATGCAAGAGTC------ACAGGACAGCACAGGTGGGGCAGGGTTCTGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     313135 210 +   2037526 tttggcagatggtgggaccggagaggtGGAGACCAGAGAGCAAAAAGTGACCA-GGAACTCTTGGAAAAGCATGAACTAGAATTGAGACCTTCTGGTCCTCTGACCCACCTCCCATCTGGGAT-ACAGAGATGTGTGAGTCAGGGAGACATGGCTTAGGCAAGACAAAGATGCAAGAGAC------ACAGGACAGCACAGGTGGGGCAAGGTTCCGGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74979582 210 + 122973662 tttggcagacggtggga-ccgagaggtggagaCCAGAGAGCAAAAAGTGACCAGGGAACTCTTGGAAAAGCATGAACTAGAATTGAGACCTTCTGGTCCTCTGACCCACCTCCCATCTGGGAT-ACAGAGATGTGTGAGTCAGGGAGACATGGCTTGGGCAAGACAAAGATGCAAGAGTC------ACAGGACAGCAGAGGTGGGGCAGGGTTCAGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857751 210 + 172585720 tttggcagatgGTGGGA-TGGAGAGGTGGAGACCAAAGAGCAAAAAGTGACCAGGGAACACTTGGAAAAGCATGAACCAGAATTGAGACCTTCTGGTCCTCTGACCCACCTCCCATCTGGGAT-ACAGAGATGTGTGAGTCAGGGAGACATGACTTAGGCAAGGCAAAGATACAAGAGTC------ACAGGACAGCACAGGTGGGGCAGGGTTCAGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30147241 210 - 170955103 TTTGGCAGATGGTGGGA-TGGAGAGGTGGAGACCAAAGAGCAAAAAGTGACCAGGGAACACTTGGAAAAGCATGAACCAGAATTGAGACCTTCTGGTCCTCTGACCCACCTCCCATCTGGGAT-ACAGAGATGCGTGAGTCAGGGAGACATGACTTAGGCAAGGCAAAGATACAAGAGTC------ACAGGACAGCACAGGTGGGGCAGGGTTCAGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     396450 210 +   1495729 tttggcagatggtggga-tggagaggcggagaccaaagagcaaaaagtgaccagggaacacttggaaaagcatgaaccagaactgagaccttctggtcctctgacccACCTCCCATCTGGGAT-ACAGAGATGCGTGAGTCAGGGAGACATGACTTAGGCAAGGCAAAGATACAAGAGTC------ACAGGACAGCACAGGTGGGGCAGGGTTCAGGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     498253 210 -    863181 tttggcagatggtggga-tggagaggcggagaCCAAAGAGCAAAAAGTGACCAGGGAACACTTGGAAAAGCATGAACTAGAATTGAGACCTTCTGGTCCTCTGACCCACCTCCCATCTGGGAT-ACGGAGATGTGTGAGTCAGGGAGACATGACTTAGGCAAGGCAAAGATACAAGAGTC------ACAGGACAGCACAGGTGGGACAGGGTTCAGGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646765 210 -  71996105 tttggcagatggtggga-tggagaggcggagaCCAAAGAGCAAAAAGTGACCAGGGAACTCTTGGAAAAGCATGAACCAGAATTGAGATCTTCTGGTCCTCTGACCCACCTCCCATCTGGGAT-ACAGAGATGTGTGAGTCAGGGAGACACGACTTAGGCAAGGCAAAGATACAAGAGTC------ACAGGACAGCACAGGTGGGGCAGGGTTCAGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     379614 210 -    735854 TTTGGCAGATGGTGGGA-TGGAGAGGTGGAGACCAAAGAGCAAAAAGTGACCAGGGAACACTTGGAAAAGCATGAACCAGAATTGAGACCTTCTGGTCCTCTGACCCACCTCCCATCTGGGAT-ACGGAGATGTGTGAGTCAGGGAGACATGACTTAGGCAAGGCAAAGATACAAGAGTC------ACAGGACAGCACAGGTGGGGCAGGGTTCAGGT
i manLeu1.NW_012107142v1   I 15063 C 0
s colAng1.NW_012115577v1     285145 210 -   1829203 tttggcagatggtggga-tggagaggtggagaCCAGAGAGCAAAAAGTGACCAGGGAACTCTTGGAAAAGCATGAACCAGAATTGAGACCTTCTGGTCCTCTGACCCACCTCCCATCTGGGAT-ACAGAGATGTGTGAGTCAGGGAGACATGACTTAGGGAAGGCAAAGATACAAGAGTC------ACAGGACAGCAGAGGTGGGGCAGGGTTCAGGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30484985 196 + 171630274 gttggcagatgatggga-tggagagatggagaccagagagcaaaaagtgaccaaggaactcttggaaaagcatggactagaaatgagaccttctgatccTCTGACCCACCTCCCACCTGCCAT-ACA-------------GAGGGAGACATGGCTCAGGCAAGGCAAAGATGCAAGAGCC------ACAGGACAGCACAGGTAGGGCA-GGTTCAGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           291108 209 +    515838 tttggcagatgatggga-tggagagatggagaccagagagcaaaaagtgaccaaggaactcttggaaaagcatggactagaactgagaccttcAGATCCTCTGACCCACCTCCCACCTGCCAT-ACAGAGATGTGTGAGTGAGGGAGACATGGCTTAGGCAAGGCAAACATGCAAGAGCC------ACAGGACAGCACAGGTGGGGCA-GGTTCAGGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     920252 209 -   1771730 tttggcagatgatggga-tggagagatggagaccagagagcaaaaagtgacCAAGGAACTCTTGGAAAAGCATGGACTAGAATTGAGACATTCAGATCCTCTGACCCACCTCCCACCTGCCAT-ACAGAGATGTGTGAGTGAGGGAGACATGGCTTAGGCAAGGCAAAGATGCAAGAGCC------ACAGGACAGTACAGGTGGGGCA-GGTTCAGGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     101306 195 -    486031 tttggcagatgatgaga-tggagagatggagaccagagagc-aaaagtgacCAAGGAACTCTTGGAAAAGCATGGACTAGAATTGAGACCTATTGATCCTCTGACCCACCTCCCACCTGCCCT-ACA-------------GAGGGAGATATGGCTTAGGCAAGGCAGAGATGCAAGAGCC------ACAGGACAGCACAGGTGGGGCA-GGTGCAGGT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           336260 188 +  18854210 tttgatggatggtggga-tgaagaaatggagaccagagagC--AAGGTATCCAGGGAACACTTGAGGAAGCATGGACCAGAATTGA---------ATCCTGTGACCCACCTCCCATCTGGGACAACAGAGATGTGTGAGTGAAGGAGATAGGGCTTAGAC-AGGCACAGGTGCAATGGTC------ACA-----------GTGAAGCAGGGTTCTGGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58114514 177 -  94987271 TTCTACGGAGGGCAGGA-AGGAGAGACCAACAACAGAGAGC--ACAGTGACCAGGCAGCTCTTGGGGAAGCACAGATTACAATCCA-ACCCCCTTTCCCCATGTACCTCCT-CCATCTTCAGT-GCCTAAACATGTATGTCAAGGAGGTACCAATTAGGCAGTA-----ATTCCAGAGAC------CCTGGAGG------------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26354149 131 +  26524999 ttttatggatgGTGGGA-GGGACAGCCAGAGCCCAGGGAC---AGCGTGGCTGGGGGA------------------------------------------------------CCGTCCAGGAG-GCAGGGACATGTGCGTGGAGGGGGCA--GCT--GGGACCGTGACGGTGCTGGA----------------AGGGCGGGCAGGGCGGG--------
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            46556 208 +     53444 TTTTAGGGATGGTGGGA-TGCAAAGATAGAGGCCAAAGAGGAATATGG---CAGAGGACTCTTGGAGAAGCATGGGCTGGATTTCA-TCCTGCCGGCCCTGTGGTCCCTCTTCCACTCGGGGT-GCAAAAGTACTTGAGTAAAGGAGAGGTGGCTTAGGAAAGGAAAATGTGCAGGAGCTCCTAGAGCAGGAGGGCACAGGGAAGGACAGGCGT----
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e proCoq1.NW_012149775v1     194788 372 -   1411461 I

a score=29852.000000
s hg38.chr6_GL000254v2_alt  1502464 2 +   4827813 TC
s panTro5.chr6             30371284 2 + 175400573 TC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30605609 2 + 173848474 TC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     313345 2 +   2037526 TC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74979792 2 + 122973662 TC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857961 2 + 172585720 TC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30147451 2 - 170955103 TC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     396660 2 +   1495729 TC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     498463 2 -    863181 TC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646975 2 -  71996105 TC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     379824 2 -    735854 TC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     285355 2 -   1829203 TC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30485181 2 + 171630274 TC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           291317 2 +    515838 TC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     920461 2 -   1771730 TC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     101501 2 -    486031 TC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     195160 2 -   1411461 TC
i proCoq1.NW_012149775v1   I 372 C 0
s mm10.chr17               58114691 2 -  94987271 CC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26354280 1 +  26524999 -C
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            46764 2 +     53444 CC
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               375272 2377 + 123392446 I
e otoGar3.GL873550           336448 0 +  18854210 C

a score=2351624.000000
s hg38.chr6_GL000254v2_alt  1502466 131 +   4827813 AGGCCTCACCGTCAGGAGCTCCCTTGCTGGCCTCTCATTCTTCTCCTCCAGTTCTTCAATAAGAGCACTAAACCGGCAGATCTCCCCAGCAACCAGCAAATCAAATTCATCCCGTTGCCTCAAGATGTCCC
s panTro5.chr6             30371286 131 + 175400573 AGGCCTCACCGTCAGGAGCTCCCTTGCTGGCCTCTCATTCTTCTCCTCCAGTTCTTCAATAAGAGCACTAAACCGGCAGATCTCCCCAGCAATCAGCAAATCAAATTCATCCCGTTGCTTCAAGATGCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30605611 131 + 173848474 AGGCCTCACCGTCAGGAGCTCCCTTGCTGGCCTCTCATTCTTCTCCTCCAGTTCTTCAATAAGAGCACTAAACCGGCAGATCTCCCCAGCAATCAGCAAATCAAATTCATCCCGTTGCTTCAAGATGTCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     313347 131 +   2037526 AGGCCTCACCGTCAGGAGCTCCCTTGCTGGCCTCTCATTCTTCTCCTCCAGTTCTTCAATAAGAGCACTAAACCGGCAGATCTCCCCAGCAACCAGCAAATCAAATTCATCCCGTTGCTTCAAGATGTCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74979794 131 + 122973662 AAGCCTCACCGTCAGGAGCTCCCTTGCTGGCCTCTCATTCTTCTCCTCCAGTTCTTCAATAAGAGCACTAAACCGGCAGATCTCCCCAGCAACCAGCAAATCAAATTCATCCCGTTGCTTCAAGATGTCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30857963 131 + 172585720 AGGCCTCACCGTCAGGAGCTCCCTTGCTGGCCTCTCATTCTTCTCCTCCAGTTCTTCAATAAGAGTACTAAACCGGCAGATCTCTCCAGCAACCAGGAAATCAAATTCATCCTGTTGCTTCAAGATGTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30147453 131 - 170955103 AGGCCTCACCGTCAGGAGCTCCCTTGCTGGCCTCTCATTCTTCTCCTCCAGTTCTTCAATAAGAGTACTAAACCGGCAGATCTCTCCAGCAACCAGGAAATCAAATTCATCCTGTTGCTTCAAGATGTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     396662 131 +   1495729 AGGCCTCACCGTCAGGAGCTCCCTTGCTGGCCTCTCATTCTTCTCCTCCAGTTCTTCAATAAGAGTACTAAACCGGCAGATCTCTCCAGCAACCAGGAAATCAAATTCATCCTGTTGCTTCAAGATGTCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     498465 131 -    863181 AGGCCTCACCGTCAGGAGCTCCCTTGCTGGCCTCTCATTCTTCTCCTCCAGTTCTTCAATAAGAGTACTAAACCGGCAGATCTCTCCAGCAACCAGGAAATCAAATTCATCCTGTTGCTTCAAGATGTCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29646977 131 -  71996105 AGGCCTCACCGTCAGGAGCTCCCTTGCTGGCCTCTCATTCTTCTCCTCCAGTTCTTCAATAAGAGTACTAAACCGGCAGATCTCTCCAGCAACCAGGAAATCAAATTCATCCTGTTGCTTCAAGATGTCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     379826 131 -    735854 AGGCCTCACCGTCAGGAGCTCCCTTGCTGGCCTCTCATTCTTCTCCTCCAGTTCTTCAATAAGAGTACTAAACCGGCAGATCTCTCCAGCAACCAGGAAATCAAATTCATCCTGTTGCTTCAAGATGTCTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     285357 131 -   1829203 AGGCCTCACCGTCAGGAGCTCCCTTGCCGGCCTCTCATTCTTCTCCTCCAGTTCTTCAATAAGAGCACTAAACCGGCAGATCTCTCCAGCAACCAGGAAATCAAATTCATCCTGTTGCTTCAAGATGTCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30485183 131 + 171630274 AGTCCTCACCGTCAGGAGCTCCCTTACTGGCCTCTCATTCTTCTCCTCCAGTTCTTCAATTAGAGCACTAAACCGGCAGATCTCCCCAGCAACCAGGAAATCAAATTCATCCCGTTGCTTCAAGATGTCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           291319 131 +    515838 AGGCCTCACCGTCAGGAGCTCCCTTGCTGGCCTCTCATTCTTCTCCTCCAGTTCTTCAATCAGAGCACTAAACCGGCAGATCTCCCCAGCAACCAGGAAATCAAATTCATCCCGTTGCTTCAAGATATCTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     920463 131 -   1771730 AGGCCTCACCGTCAGGAGCTCCCTTGCTGGCCTCTCATTCTTCTCCTCCAGTTCTTCAATCAGAGCACTAAACCGGCAGATCTCCCCAGCAACCCGGAAATCAAATTCATCCCGTTGCTTCAAGATGTCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     101503 131 -    486031 AGGCCTCACCGTCAGGAGCTCCCTTGCTGGCCTCTCATTCTTCTCCTCCAGTTCTTCAATCAGAGCACTAAACCGGCAGATCTCCCCAGCAACCAGGAAATCAAATTCATCCCGTTGCTTCAAGATTTCTC
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               377649 131 + 123392446 AGGCCTCACCGTCAGCAGCCTCTCTGGGGGCCTCTCCTTCTTCTCCTCCAGCTCTTCGACCAGAGCATTGAAGCGGCGGATCTCCCCAGCCAGCAGGGCCTCCAGCTCCTCCCGCTGCGTCAGGATGTCCT
i micMur3.chr6             I 2377 C 0
s proCoq1.NW_012149775v1     195162 131 -   1411461 AGGCCTCACCGTCAAGAGCTCTCCTGCTGGCCTCTCCTTCTTCTCCTCCAGCTCTTCAATCAGAGCACTAAACCGGCAGATCTCCCCAGCGACCAGGGAATCAAACTCATCCTGTTGCTTCAAGATGTCCC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           336448 127 +  18854210 ----CTCACCGTCAGGAGCTCCCCTGCCGGCCTCTCATTCTTCTTTTCCAGTTCTTCAATCAGAGCACTAAACCGGCAGATCTCCCCAGCGACCAGGAAGTCAAACTCATCCTGTTGCTTTAAGATGTCTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58114693 131 -  94987271 AGGCCTCACCGTCAGGAGCCCCCTGGCTGTCCTCTTGTTCTTCTCCTCCAGCTCCTCAATCAGGGTGCTGAACCGGCAGATCTCCCCAGTGGCCAGGGAATCAAACTCTTCCTGCTGCTTCAAGATGTCCC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26354281 131 +  26524999 GGGGCTCACCGTCAGCAGCTCCCTGGCGGGCCTCCCCAGCTTCTCCTCCAGCTCGGCCACCAGGGTGCTAAACCGGCAGATCTCCTCACTGACCAGGGCGTCAAAGACATCCCGTTGCTTCAGGATGTCGC
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            46766 127 +     53444 -AGGCTGACCGTCTG-AGCT-CATTGCCAGTCTGTCCTTCTTCCCCTCCAGCTCTGCAATCAGGG-GCTGAACTGGCAGATCTCCCCAGTGGCCAGGAGGTCGACCTCTTCCTGGTGCTGCAGGATGCCCC
i dasNov3.JH567297         C 0 I 9

a score=1958356.000000
s hg38.chr6_GL000254v2_alt  1502597 117 +   4827813 CATCCTGGCTCTCCAATTGTGCTAAGAGGATGCTCTGCTGTTCCTCTAGAAACTTCCTCAGGTGTGCGAACTCAGAAATCACCTGTTGTCTCTTGGTGGACACCTGAGTCTGAGGGG
s panTro5.chr6             30371417 117 + 175400573 CATCCAGGCTCTCCAATTGTGCTAAGAGGATGCTCTGCTGTTCCTCTAGAAACTTCCTCAGGTGTGCGAACTCAGAAATCACCTGTTGTCTCTTGGTGGACACCTGAGTCTGAGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30605742 117 + 173848474 CATCCAGGCTCTCCAATTGTGCTAAGAGGATGCTCTGCTGTTCCTCTAGAAACTTCCTCAGGTGTGCGAACTCAGAAATCACCTGTTGTCTCTTGGTGGACACCTGAGTCTGAGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     313478 117 +   2037526 CATCCAGGCTCTCCAATTGTGCTAAGAGGATGCTCTGCTGTTCCTCTAGAAACTTCCTCAGGTGTGCGAACTCAGAAATCACCTGTTGTCTCTTGGTGGACACCTGAGTCTGAGGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74979925 117 + 122973662 CATCCAGGCTCTCCAATTGCACTAAGAGGATGCTCTGCTGTTCCTCTAGAAACTTCCTCAAGTGTGCGAACTCAGAAATCACCTGTTGTCTCTTGGTGGACACCTGAGTCTGAGGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30858094 117 + 172585720 CATCCAGGCTCTCCAGTTGTGCTAAGAGGATGCTCTGCTGTTCCTCTAGAAACTTCCTCAGGTGTGCGAACTCAGAAATCACCTGTTGTCTCTTGGTGGACACCTGAGTCTGAGGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30147584 117 - 170955103 CATCCAGGCTCTCCAGTTGTGCTAAGAGGATGCTCTGCTGTTCCTCTAGAAACTTCCTCAGGTGTGCGAACTCAGAAATCACCTGTTGTCTCTTGGTGGACACCTGAGTCTGAGGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     396793 117 +   1495729 CATCCAGGCTCTCCAATTGTGCTAAGAGGATGCTCTGCTGTTCCTCTAGAAACTTCCTCAGGTGTGCGAACTCAGAAATCACCTGTTGTCTCTTGGTGGACACCTGAGTCTGAGGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     498596 117 -    863181 CATCCAGGCTCTCCAGTTGTGCTAAGAGGATGCTCTGCTGTTCCTCTAGAAACTTCCTCAGGTGTGCGAACTCAGAAATCACCTGTTGTCTCTTGGTGGACACCTGAGTCTGAGGGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29647108 117 -  71996105 CATCCAGGCTCTCCAATTGTGCTAAGAGGATGCTCTGCTGTTCCTCTAGAAACTTCCTCAGGTGTGTGAACTCAGAAATCACCTGTTGTCTCTTGGTGGACACCTGAGTCTGAGGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     379957 117 -    735854 CATCCAGGCTCTCCAGTTGTGCTAAGAGGAGGCTCTGCTGTTCCTCTAGAAACTTCCTCAGGTGTGCGAACTCAGAAATCACCTGTTGTCTCTTGGTGGACACCTGAGTCTGAGGGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     285488 117 -   1829203 CATCCAGGCTCTCCAATTGTGCTAAGAGGATGCTCTGCTGTTCCTCTAGAAACTTCCTCAGGTGTGCAAACTCAGAAATCACCTGTTGTCTCTTGGTGGACACCTGAGTCTGAGGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30485314 117 + 171630274 CATCCAGGCTCTCCAGCTGTGCTAAGAGGATGCTCTGCTGTTCCTCTAGAAACTTGCTCAGATGTGAAAACTCAGAAATCACCTGCTGTCTCTTGGTGGACACCTGAGTCTGAGGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           291450 117 +    515838 CATCCAGGCTCTCCAACTGTGCCAAGAGGATGCTCTGCTGTTCCTCTAGAAACTTGCTCAGATGTGAAAACTCAGAAATCACCTGCTGTCTCTTGGTGGACACCTGAGTCTGAGGGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     920594 117 -   1771730 CATCCAGGCTCTCCAACTGTGCTAAGAGGATGCTCTGCTGTTCCTCCAGAAACTTGCACAGATGTGAAAACTCAGAAATCACCTGCTGTCTCTTGGTGGACACCTGAGTCTGAGGGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     101634 117 -    486031 CATCCAGGCTCTCCAGCTGTGCTAAGAGGATGCTCTGCTGTTCCTCTAGAAACTTGCTCAGATGTGAAAACTCAGAAATCACCTGCTGTCTCTTGGTGGACACCTGAGTCTGAGGGG
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               377780 115 + 123392446 CTTCCAGGCTCTCCAGTTGCCCCAAGAGGGTGCTCTGCTGCTCCTCCAGGCACCGGGCCAGACGGGCAAACTCGGAGGTCACCTGCTGTCTCTTGGTGGACACCTGGGTCTAGGG--
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     195293 117 -   1411461 CATCCAGGCTCTCCAGTTGCGCTAAGAGGATGCTCTGCTGGTCCTCCAGGAACTGGGTCAGACGTGCAAACTCGGATATCACCTGTTGTCTCTTGGTGGACACCTGAGTCTGAGGGG
i proCoq1.NW_012149775v1   C 0 I 411
s otoGar3.GL873550           336575 117 +  18854210 CATCGAGGCTCTCCAGCTGCGCTAAGAGGATGCTCTGCTGTTCCTTCAGGAACCGGCTCAGGTGTGCAAATTCGGAAATCACCTGTTGTCTCTTAGTGGACACCTGAGTCTGAAGGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58114824 117 -  94987271 CGTCTAACCCCTCCAGTTGTGCTAAGAGGGCAGTCTGCTGTTGCTGCAGGAACTGGCTCAGATGCGCAAACTGTGAGATCACCTGTTGCCTCTTGGTGGCCACCTGAGTCTGAGAAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26354412 117 +  26524999 CATCCAGCTTCTCCAGCTCAGCTAAAAGGACGCTCTGCTGCTCCTCCAGGAACTGACTCAGATGTGCAAACTCGAAAATCACTTTTTGTCTTTTGGTGGCCACCTGGCACTGGGCAG
i canFam3.chr35            C 0 C 0
e dasNov3.JH567297            46893   9 +     53444 I

a score=169495.000000
s hg38.chr6_GL000254v2_alt  1502714 13 +   4827813 GCAGGAGGCAAGC
s panTro5.chr6             30371534 13 + 175400573 GCAGGAGGCGAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30605859 13 + 173848474 GCAGGAGGCGAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     313595 13 +   2037526 GCAGGAGGCGAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74980042 13 + 122973662 GCAGGAGGAGACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30858211 13 + 172585720 GCAGGAGGAGAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30147701 13 - 170955103 GCAGGAGGAGAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     396910 13 +   1495729 GCAGGAGGAGAGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     498713 13 -    863181 GCAGGAGGAGAGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29647225 13 -  71996105 GCAGGAGGAGAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     380074 13 -    735854 GCAGGAGGAGAGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     285605 13 -   1829203 GCAGGAGGAGAGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30485431 13 + 171630274 GCAGGAGGAGAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           291567 13 +    515838 GCAGGAAGAGAGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     920711 13 -   1771730 GCAGGAGGAGAGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     101751 13 -    486031 GCAGGAGGAGAGC
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               377895 13 + 123392446 GCAGGAGGCGAGC
i micMur3.chr6             C 0 I 505
s otoGar3.GL873550           336692 13 +  18854210 GCAAAAGGAGAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58114941 13 -  94987271 GGAAGATGAGAGC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26354529  9 +  26524999 GGTGGAGGC----
i canFam3.chr35            C 0 C 0
e dasNov3.JH567297            46893  9 +     53444 I
e proCoq1.NW_012149775v1     195410 411 -   1411461 I

a score=1435115.000000
s hg38.chr6_GL000254v2_alt  1502727 144 +   4827813 CCAAGAGAAAGTT-TGC----------TTCctc------------cttctccc-----tctgctcctcttcctc------------------------------------------------------------------------------------------------------------------------ccctgtcccCA----------------------------------------GGT------------------------AGATCTGGAAC-----------------------------------------TGTGTC---------------------ATGGTTTCCTTTTCACTTGTCATCCCATTTCGAGAAGCAAGACT-CACAG------TGTTGTCTCAGCACCATC
s panTro5.chr6             30371547 144 + 175400573 CCAAGAGAAAGTT-TGC----------TTtctc------------cttctccc-----tctgctcctcttcctc------------------------------------------------------------------------------------------------------------------------ccctgtcccCA----------------------------------------GGT------------------------AGATCTGGAAC-----------------------------------------TGTGTC---------------------ATGGTTTCCTTTTCACTTGTCATCCCATTTCGGGAAGCAAGACT-CACAG------TGTTGTCTCAGCACCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30605872 144 + 173848474 CCAAGAGAAAGTT-TGC----------TTtctc------------cttctccc-----tctgctcctcttcctc------------------------------------------------------------------------------------------------------------------------ccctgtcccCA----------------------------------------GGT------------------------AGATCTGGAAC-----------------------------------------TGTGTC---------------------ATGGTTTCCTTTTCACTTGTCATCCCATTTCGGGAAGCAAGACT-CACAG------TGTTGTCTCAGCACCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     313608 144 +   2037526 CCAAGAGAAAGTT-TGC----------TTCctc------------cttctccc-----tctgctcctcttcctc------------------------------------------------------------------------------------------------------------------------ccctgtcccCA----------------------------------------GGT------------------------AGATCTGGAAC-----------------------------------------TGTGTC---------------------ATGGTTTCCTTTTCACTTGTCATCCCATTTTGGGAAGCAAGACT-CACAG------TGTTGTCTCAGCACCATC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74980055 147 + 122973662 CCAAGAGAAAGGT-TGC----------Ttcctc------------cttctccc-----tctgctcctcttcctc---------------------------------------------------------------------------------------------------------------------ctTCCCTGTCCCCA----------------------------------------GGT------------------------AGATCTGGAAC-----------------------------------------TGTGTC---------------------AAGGTTTCCTTTTCACTTGTCATCCCATTTCAGGGAGCAAAACT-CACAG------TGCTGTCTCAGCACCACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30858224 147 + 172585720 CCAAGAGAAAGTT-TGC----------Ttcctc------------cttctccc-----tctgctcctcttcctc---------------------------------------------------------------------------------------------------------------------ctACCCTGTCCCCA----------------------------------------GGT------------------------AGATCTGGAAC-----------------------------------------TGTATC---------------------ATGGTTTCCTCTTCACCTGTCATCCCATTTCAGGGAGCAAGACT-CACAG------TGCTGTCTCAGCACCATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30147714 147 - 170955103 CCAAGAGAAAGTT-TGC----------Ttcctc------------cttctccc-----tctgctcctcttcctc---------------------------------------------------------------------------------------------------------------------ctACCCTGTCCCCA----------------------------------------GGT------------------------AGATCTGGAAC-----------------------------------------TGCATC---------------------ATGGTTTCCTCTTCACCTGTCATCCCATTTCAGGGAGCAAGACT-CACAG------TGCTGTCTCAGCACCATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     396923 147 +   1495729 CCAAGAGAAAGTT-TGC----------Ttcctc------------cttctccc-----tctgctcctcttcctc---------------------------------------------------------------------------------------------------------------------ctACCCTGTCCCCA----------------------------------------GGT------------------------AGATCTGGAAC-----------------------------------------TGCATC---------------------ATGGTTTCCTCTTCACCTGTCATCCCATTTCAGGGAGCAAGACT-CACAG------TGCTGTCTCAGCACCATC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     498726 147 -    863181 CCAAGAGAAAGTT-TGC----------Ttcctc------------cttctccc-----tctgctcctcttcctc---------------------------------------------------------------------------------------------------------------------ctACCCTGTCCCCA----------------------------------------GGT------------------------AGATCTGGAAC-----------------------------------------TGCATC---------------------ATGGTTTCCTCTTCACCTGTCATCCCATTTCAGGGAGCAAGACT-CACAG------TGCTGTCTCAGCACCATC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29647238 147 -  71996105 CCAAGAGAAAGTT-TGC----------TTCCTC------------CTTCTCCC-----TGTGCTCCTCTTCCTC---------------------------------------------------------------------------------------------------------------------CTACCCTGTCCCCA----------------------------------------GGT------------------------AGATCTGGAAC-----------------------------------------TGCATC---------------------ATGGTTTCCTTTTCACCTGTCATCCCATTTCAGGGAGCAAGACT-CACAG------TGCTGTCTCAGCACCATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     380087 147 -    735854 CCAAGAGAAAGTT-TGC----------Ttcctc------------cttctccc-----tctgctcctcttcctc---------------------------------------------------------------------------------------------------------------------ctACCCTGTCCCCA----------------------------------------GGT------------------------AGATCTGGAAC-----------------------------------------TGCATC---------------------ATGGTTTCCTCTTCACCTGTCATCCCATTTCAGGGAGCAAGACT-CACAG------TGCTGTCTCAGCACCATC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     285618 147 -   1829203 CCAAAAGAAAGTT-TGC----------Ttcctc------------cttcttcc-----tctgctcctcttcctc---------------------------------------------------------------------------------------------------------------------ctACCCTGTCCCCA----------------------------------------GGT------------------------AGATCTGGAAC-----------------------------------------TGCGTC---------------------ATGGTTTCCTTTTCACCTGTCATCCCATTTCAGGGAGCAAGACT-CACAG------AGCTGTCTCAGCACCATC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30485444 146 + 171630274 CCAGGAGAAAGTT-TGC----------TTCCTC------------TTTCTCCC------CTGCTCCTCCTCCTC---------------------------------------------------------------------------------------------------------------------CTCTCCTGTCCCCA----------------------------------------GGT------------------------AGATCTGGAAC-----------------------------------------TGTGTC---------------------ATGGTTTCCTTTTCACCTGTCATCCCATGTCTGGGGGCAAAATT-TATAG------TAGTGCCTCAGCACCATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           291580 146 +    515838 CTGGGAGAAAGTT-TGC----------TTCCTC------------CTTCTCCC------CCACTACTCCTCCTC---------------------------------------------------------------------------------------------------------------------CTCTCCTGTCCCCA----------------------------------------GGT------------------------AGATCTGGAAC-----------------------------------------TGTGTC---------------------ATGGTTTCCTTTTCACCTGTCATCCCATGTCTGGGAGCAAGATT-CACAG------TACTGCCTCAGCACCATC
i saiBol1.JH378341         C 0 M 467
s cebCap1.NW_016107755v1     920724 146 -   1771730 CCGGGAGAAAGTT-TGC----------Ttcttc------------cttctccc------ccgctcctcctcctc---------------------------------------------------------------------------------------------------------------------ctctcctGTCCCCA----------------------------------------GGT------------------------AGATCTGGAAC-----------------------------------------TGTGTC---------------------ATGGTTTCCTTTTCACCTGTCATCCCATGTCTGGGAGCAAGATT-CACAG------TACTGTCTCAGCACCATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     101764 146 -    486031 CCAGGAGAAAGTT-TGC----------Ttcctc------------cttctccc------ctgctcctcctcctc---------------------------------------------------------------------------------------------------------------------ctctcctGTCCCCA----------------------------------------GGC------------------------AGATCTGGAAC-----------------------------------------TGTTTC---------------------ATGGTTTCCTTTTAACCTGTCATCCCATGTCTGGGAGCAAGATT-CATAG------TACTGCCTCAGCACCATC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           336705 237 +  18854210 GGTGAAGGAAGTT-TTCAAGttcatttctcctc------------ctcttcct-----ttttcttcttttcc-c---------------------------------------------------------------------------------------------------------------------ttactttgctcccatctccttccTAGTCTAGATCAAGATCCTCCAAAAATGGGTGGT------------------------AAAACCAGAACAACCCTCCACGCGCACACACACCCCTACACGCATGCACACACACGTC---------------------GGTGTTTCCTTTCCACTCA-CATTCCACTCTTGAAAGCTAGACTATACAG------CATTACCTCAGCATCATC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58114954 270 -  94987271 CAGGGAGAACATT-TTA----------CTCTCCTCACAGCGAGATCTTCTCCC----ATCTTTTCCCCCTCTTCCTGTGGCATCTCATCTGTCCTTTCTTCCCTTTCCTTATAAATTCCCACTTCCCTCTTGATCTATGCCCACACCTCCCAAGGTTAGGCAGTAAAATCAGAGCCCCCTACTCCTGCCTGCTCCTCAGCCCCCA----------------------------------------TAA------------------------GGATGTGGAGC-----------------------------------------TATG-----------------------------TTCTTTCAGCTTGTCACTCCATTTCTGGGAGCGA-----CACAGCCCAGCTATTGCCTCCCTATCAC-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26354538 196 +  26524999 -CAGGAGGGAGTTATGC----------CTCCTC------------CTCCCCCCTTCCTTCTGCCACCCCCCCGC---------------------------------------------------------------------------------------------------------------------CCTTGCCGGGCCCA----------------------------------------GGTTCACGTCCTCCACGTTTCAGTGGAAAATCCGAGCC-----------------------------------------TCCAGCAGCCCCAGGTGCCCGGACAGAATGGCATCCCCTCCACCCACCAAGCTTCTTCTGGGGGCTGACTG-CCCGG------CGTGGCCCCAGCCCCTC-
i canFam3.chr35            C 0 C 0
e micMur3.chr6               377908 505 + 123392446 I
e dasNov3.JH567297            46893   9 +     53444 I
e proCoq1.NW_012149775v1     195410 411 -   1411461 I

a score=1577441.000000
s hg38.chr6_GL000254v2_alt  1502871 156 +   4827813 TGCTGCAGCTTCTAAAAGG-GGTAGGGCTTACAGGAGGTGTAGG--AGGAGGTGGTGGGGACACCCTACCTCctgtcttgtatgaaaagcacattatgtgcacagccctgagctactttacagtcacaatctcatttaatgcttacagtaattcaatga
s panTro5.chr6             30371691 156 + 175400573 TGCTGCAGCTTCTAAAAGG-GGTAGGGCTTACAGGAGGTGTAGG--AGGAGGTGGTGGGGACACCCTACCTCCTGTCTTGTACGAAAagcacattatgtgcacagccctgagctactttacagtcacaatctcatttaatgcttacagtaattcaatga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30606016 156 + 173848474 TGCTGCAGCTTCTAAAAGG-GGTAGGGCTTACAGGAGGTGTAGG--AGGAGGTGGTGGGGACACCCTACCTCCTGTCTTGTACGAAAagcacattatgtgcacagccctgagctactttacagtcacaatctcatttaatgcttacagtaattcaatga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     313752 156 +   2037526 TGCTGCAGCTTCTAAAAGG-GGTAGGGCTTACAGGAGGTGTAGG--AGGAGGTGGTGGGGACACCCTACCTCCTGTCTTGTATGAAAagcacattatgtacacagccctgacctactttacagtcacaatctcatttaatgcttacagtaattcaatga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74980202 156 + 122973662 TACTGCAGCTTCTAAAAGG-GGTAGGGCTTAGAAGAGGTGTAGG--AGGAGGTGGTGGGGACACCCTACCTCctgtcttgtatgaaaagcacattatgtgcatagccctgagctactttacagtcacaatctcatttaatgcttacagtaattcaatga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30858371 157 + 172585720 TGCTGCAGCTTCTAAAAGAGGGTAGGGCTTAGAGGAGGTGTAGG--AGGAGGTGGTGGGGACACCCTACCTCCTGTCTTGTATGAAAagcacattatgtgcgcagccctgagctactttacagtcacagtctcatttaatacttacagtaattcaatga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30147861 157 - 170955103 TGCTGCAGCTTCTAAAAGAGGGTAGGGCTTAGAGGAGGTGTAGG--AGGAGGTGGTAGGGACACCCTACCTCCTGTCTTGTATGAAAAGCACattatgtgcacagccctgagctactttacagtcacagtctcatttaatacttacagtaattcaatga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     397070 157 +   1495729 TGCTGCAGCTTCTAAAAGAGGGTAGGGCTTAGAGGAGGTGTAGG--AGGAGGTGGTAGGGACACCCTACCTCctgtcttgtatgaaaagcacattatgtgcacagccctgagctactttacaatcacagtctcatttaatacttacagtaattcaatga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     498873 157 -    863181 TGCTGCAGCTTCTAAAAGAGGGTAGGGCTTAGAGGAGGTGTAGG--AGGAGGTGGTGGGGACACCCTACCTCCTGTCTTGTATGAAAagcacactatgtgcgcagccctgagctactttacagtcacagtctcatttaatacttacagtaattcaatga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29647385 157 -  71996105 TGCTGCCGCTTCTAAAAGAGGGTAGGGCTTAGAGGAGGTGTAGG--AGGAGGTGATGGGGACACCCTACCTCCTGTGTTGTATGAAAAGCACattatatgcacagccctgagctactttacagtcataatctcatttaatacttacagtaattcaatga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     380234 157 -    735854 TGCTGCAGCTTCTAAAAGAGGGTAGGGCTTAGAGGAGGTGTAGG--AGGAGGTGGTGGGGACACCCTACCTCctgtcttgtatgaaaagcacactatgtgcgcagccctgagctactttacagtcacagtctcatttaatacttacagtaattcaatga
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     285765 156 -   1829203 TGCTGCAGCTTCTAAAAGA-GGTAGGGCTTAGAGGAGGTGTAGG--AGGAGGTGGTGGGGACACCCTACCTCCTGTCTTGTATGAAAagcacattatgtgcacagccctgagctactttacagtcacagtctcatttaatacttacagtaattcaatga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30485590 156 + 171630274 TGCTATAGCTTCTAAAAGG-GGTAGGGCTCAGAGGAGGTGTAGG--GAGAGGTGGTGGGGGAACCCTACCTCCTGTCTTGTATGAAAAGCACATGATACACACAACCctaagctactttacaggcacaatctggtttaatgtttacagtcattcaataa
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     920870 156 -   1771730 TGCTGTAGCTTCTAAAAGG-GGTAGGGCTCAGAGGAGGTGTAGG--GGGAGGTGGTGGGGGCACCCTGCCTCctgtcttgtatgaaaagcacattatatgcacagccctgagctactttacaggcacaatctggtttaatgtttacagtaattcaatga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     101910 156 -    486031 TGTTGTAGCTTCTAAAAGG-GGTAGGGCTCAGAGGAGGTGTAGG--GGGAGGTGGTGGGGGCACCCTACCTCCTGTCTTGTATGAAAagcacattatatgcacagccctgagctactttacaggcatgatctggtttaatgtttacagtaattcaatga
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           336942 155 +  18854210 TGCTGGAGCTTCTAAGCGG-GGTAGGACTCAGACACGGTGAAGG---GGAGGTGGTGGGGACACTCTACCTCctgccttttgtgaagtgcacactttgtgcatggccctaagctactttacaggcacaatctcatttaatccttgctgcagttcaatga
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58115224 110 -  94987271 TACTGTGGCTTCTAAAAGG------GGCTCAGAGTAGACCCCAG--AGATGCTGG-------------CCTC-------------------------GTACACATCACCAGGCTG--TTAGAGGCAGGATCGCA-CTAATTCCTGCACTGATTTGATAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26354734 131 +  26524999 TGTGGGAGCTTCCAGAAGC--CTGTGGCTCAGGCCGGGAGCTGCCCAGGAGACAGTGGGGACAGCACACCTCTCGTCTTGCACGA-------------------------GGTTTGTTTAGAGGCACAAACACACTACACA-TTACAGTGACTTGGGGA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               377908 505 + 123392446 I
e dasNov3.JH567297            46893   9 +     53444 I
e proCoq1.NW_012149775v1     195410 411 -   1411461 I
e saiBol1.JH378341           291726 467 +    515838 M

a score=109116.000000
s hg38.chr6_GL000254v2_alt  1503027 13 +   4827813 ggtcatgatgatt
s panTro5.chr6             30371847 13 + 175400573 ggtcatgatgatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30606172 13 + 173848474 ggtcatgatgatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     313908 13 +   2037526 ggtcatgatgatt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74980358 13 + 122973662 ggtcatgatgatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30858528 13 + 172585720 gatcatgatgatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30148018 13 - 170955103 gatcatgatgatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     397227 13 +   1495729 gatcatgatgatt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     499030 13 -    863181 gatcatgatgatt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29647542 13 -  71996105 gatcatgatgatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     380391 13 -    735854 gatcatgatgatt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     285921 13 -   1829203 gatcatgatgatt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30485746 13 + 171630274 ggtcataacgatt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           292198 13 +    515838 GGTCATAATGatt
i saiBol1.JH378341         M 467 C 0
s cebCap1.NW_016107755v1     921026 13 -   1771730 agtcatgatgatt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     102066  2 -    486031 -----------tt
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           337097 13 +  18854210 gattgtgacaatt
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58115334 10 -  94987271 GGAAATGAAC---
i mm10.chr17               C 0 C 0
s canFam3.chr35            26354865 11 +  26524999 --GGAGGGAGACT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               377908 505 + 123392446 I
e dasNov3.JH567297            46893  9 +     53444 I
e proCoq1.NW_012149775v1     195410 411 -   1411461 I

a score=1581413.000000
s hg38.chr6_GL000254v2_alt  1503040 116 +   4827813 tttactctccatt-ttacagataagtaaactgaagttggagagttgcttgaggtcataga----gttagtgtcagagtcaggatttaaactcataataacttcaaagcccTATAATCTATG
s panTro5.chr6             30371860 116 + 175400573 tttactctccatt-ttacagataagtaaactgaagttggagagttgcttgaggtcataga----gttagtgtcagagtcaggatttaaactcataataacttcaaagcccTATAATCTATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30606185 116 + 173848474 tttactctccatt-ttacagataagtaaactgaagttggagagttgcttgaggtcataga----gttagtgtcagagtcaggatttaaactcataataacttcaaagcccTATAATCTATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     313921 116 +   2037526 tttactctccatt-ttacagataagtaaactgaagttggagagttgcttgaggtcataga----gttagtgtcagagtcaggatttaaactcgtaataacttcaaagcccTATAATCTATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74980371 116 + 122973662 tttactctccatt-ttacagataagtaaactaaagttggagagttgcttgaggtcataga----gttagtgtcagagtcaggatttaaactcataataacttcaaagcccTATAATCTATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30858541 116 + 172585720 tttactctccatt-ttacagataagtaaactgaagttagagagttgcttgaggtcataga----gttagtgtcagagtcaggatttaaactcataataacttcaaagcccTATAATCTATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30148031 116 - 170955103 tttactctccatt-ttacagataagtaaactgaagttagagagttgcttgaggtcataga----gttagtgtcagagtcaggatttaaactcataataacttcaaagcccTATAATCTATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     397240 116 +   1495729 tttactctccatt-ttacagataagtaaactgaagttagagagttgcttgaggtcataga----gttagtgtcagagtcaggatttaaactcataataacttcaaagcccTATAATCTATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     499043 114 -    863181 tttactctccatt-ttacagataagtaaactgaagtt--agagttgcttgaggtcataga----gttagtgtcagagtcaggatttaaactcataataacttcaaagcccTATAATCTATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29647555 116 -  71996105 tttactctccatt-ttacagataagtaaactgaagttggagagttgcttgaggtcatgga----gttagtgtcagagtcaggatttaaactcataataacttcaaagcccTATAATCTATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     380404 116 -    735854 tttactctccatt-ttacagataagtaaactgaagttagagagttgcttgaggtcataga----gttagtgtcagagtcaggatttaaactcataataacttcaaagcccTATAATCTATG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     285934 116 -   1829203 tttactctccatt-ttacagataagtaaactgaagttggagagttgtttgaggtcataga----gttagtgtcagagtcaggatttaaattcataataacttcaaagcccTATAATCTATG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30485759 116 + 171630274 tttactctccatt-ttacagagaagtaaactgaagttggagagttgcttgaggccataga----attagtgtcagagtcaggatttaaactcataataacttcaaagcccTATAATCTATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           292211 116 +    515838 tttactctccatt-ttacagataagtaaactgaagttggagagttgcttgaggtcataga----attagtgtcagagtcaggatttaaactcataataacttcaaagcccTATAATCTATG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     921039 116 -   1771730 tttactctccatt-ttacagataagtaaactgaagttggagagttgcttgaggtcataga----attagtgtcagagtcaggatttaaacccataataactttaaagccctgtaatctATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     102068 116 -    486031 tttactctccatt-ttacagataagtaaactaaagttggagagttgcttgaggtcataga----attagtgtcagagtcaggatttaaactcataataacttcaaagcccTATAATCTATG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     195821 116 -   1411461 tttaatctccgtt-ttacagataagtaaactgaacttagagagtagcttgagttcacata----gttagcgccagagtcaggattcgaactcagtatgacatcaaagcccCATGTGCCATG
i proCoq1.NW_012149775v1   I 411 C 0
s otoGar3.GL873550           337110 114 +  18854210 tttactctccatt-ttatagataagtaaactaaagttagagaattg--taagttcatata----gttagtgtcagagtcaggattcaagctcagaatgacttcaacgccctatgtgttttG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58115344 108 -  94987271 CTTAATCTCCATTCTTACAGGTGAGTACGTCAAAGTTAGAGAATCGATGGA------AGA----AATAATATCAAAGACAGGATTCCGATTCAGAG-AGCTCCACGTCTCTGC--TCTGTG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26354876 110 +  26524999 TGTAGTGTCTGCT-TCGCTGCA----ATACGGAGGCCAGAGACTGGCTTGAGGTCACAAAGCTGGTTACTGTGGGAGCCCAGGCACGACCTCAGAGTGACCTCTCAGCCCCACAT------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               377908 505 + 123392446 I
e dasNov3.JH567297            46893   9 +     53444 I

a score=585388.000000
s hg38.chr6_GL000254v2_alt  1503156 50 +   4827813 TTGCCTCA-GTTTCAGGAAGACACTGGACCCTGAGGAAGGGGAGGAACCTG
s panTro5.chr6             30371976 50 + 175400573 TTGCCTCA-GTTTCAGGAAGACACTGGACCCTGAGGAAGGGGAGGAACCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30606301 50 + 173848474 TTGCCTCA-GTTTCAGGAAGACACTGGACCCTGAGGAAGGGGAGGAACCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     314037 50 +   2037526 TTGCCTCA-GTTTCAGGAAGACACTGGACCCTGAGGAAGGGGAAGAACCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74980487 40 + 122973662 TTGCCTCA-GTTTCA----------GGACCCTGAGGAAGGGGAGGAACCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30858657 50 + 172585720 TTGCCTCA-GTTTCAGGAAGACATTGGACCATGAGGAAGGGGAGGAACCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30148147 50 - 170955103 TTGCCTCA-GTTTCAGGAAGACATTGGACCATGAGGAAGGGGAGGAACCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     397356 50 +   1495729 TTGCCTCA-GTTTCAGGAAGACATTGGACCGTGAGGAAGGGGAGGAACCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     499157 50 -    863181 TTGCCTCA-GTTTCAGGAAGACATTGGACCGTGAGGAAGGGGAGGAACGTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29647671 50 -  71996105 TTGCCTCA-GTTTCAGGAAGACATTGGACCGTGAGGAAGGGGAGGAACCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     380520 50 -    735854 TTGCCTCA-GTTTCAGGAAGACATTGGACCGTGAGGAAGGGGAGGAACGTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     286050 50 -   1829203 TTGCCTCA-GTTTCAGGAAGACATTGGACCCTGAGGAAGGGGAGGAACCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30485875 50 + 171630274 TTGCTTCA-GTTTCAGGAAGACACTGGACCCTGAGGATGGAGAGGGGTCCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           292327 50 +    515838 TTGCCTCA-GTTTCAGGAAGACACTGGACCCTGAGGGAGGGGAGGGGTCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     921155 50 -   1771730 TTGCCTCA-GTTTCAGGAAGACACTGGAGCCTGAGGAAGGGGAGGGGTCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     102184 50 -    486031 TTGCCTCA-GTTTCAGGAAGACACTGGACCCTGAGGAAGGGGAGGGGCCTG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     195937 50 -   1411461 TTGCCTTG-GTTTCAGGGACACACCAGGCCCTGAGGAAGGGGCGGGTCCTG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           337224 48 +  18854210 TTGCCTTG-G--TCAGGGACACAGCAGACCCTGAGGAAGGGGAGGGACTTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58115452 33 -  94987271 -AGCCTTA-GACTCTGGGA----------------GAAGgagctgggcctg
i mm10.chr17               C 0 C 0
s canFam3.chr35            26354986 21 +  26524999 ---------GCTCCGCGGGGACA-TGGTCCA--------------------
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            46902 45 +     53444 TTGCATCAGGTTTCAGGGAGGCCCTGGGCGCCAGTGGAGGGGAGG------
i dasNov3.JH567297         I 9 C 0
e micMur3.chr6               377908 505 + 123392446 I

a score=2754207.000000
s hg38.chr6_GL000254v2_alt  1503206 164 +   4827813 GGGAAGGGGTGATGACTTACCAGGAGGACTTGCATCCTTTTATTTTCTCTTGACTGGATTTCTTGAATCTCCTCTCTCTCTTTTCTTAGACATTTAAGACACTTATGGATTTGTTCCTGGGGAGAAGGAACATAAAATACTCAAGATGG--AAA-ATG-ATTTGTTCA-
s panTro5.chr6             30372026 164 + 175400573 GGGAAGGGGTGATGACTTACCAGGAGGACTTGCATCCTTTTATTTTCTCTTGACTGGATTTCTTGAGTCTCCTCTCTCTCTTTTCTTAGACGTTTAAGACACTTATGGATTTGTTCCTGGGGAGAAGGAACATAAAATACTCAAGATGG--AAA-ATG-ATTTGTTCA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30606351 164 + 173848474 GGGAAGGGGTGATGACTTACCAGGAGGACTTGCATCCTTTTATTTTCTCTTGACTGGATTTCTTGAGTCTCCTCTCTCTCTTTTCTTAGACATTTAAGACACTTATGGATTTGTTCCTGGGGAGAAGGAACATAAAATACTCAAGATGG--AAA-ATG-ATTTGTTCA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     314087 164 +   2037526 GGGAAGGGGTGATGACTTACCAGGAGGACTTGCATCCTTTTATTTTCTCTTGACTGGACTTCTTGAATCTCCTCTCTCTCTTTTCTTAGACATTTAAGACACTTATGGATTTGTTCCTGGGGAGAAGGAACATAAAATACTCAAGATGG--AAA-ATG-ATTTGTTCG-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74980527 164 + 122973662 GGGAAGGGGTGATGACTCACCAGGAGGACTTGCATCCTTTTATTTTCTCTTGACTGGATTTCTTGAATCTCCTCTCTCTCTTTTCTTAGACATTTAAGACACTTATGTATTTGTTCCTGGGGAGAAGGAACATAAAATACTCAAAATGG--AAA-ATG-ATTTGTTCA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30858707 164 + 172585720 GGGAAGGGGTGATGACTTACCAGGAGGACTTGCATCCTTTTATTTTCTCTTGACTGGATTTCTTGAATCTCCTCTCTCTCTTTTCTTAGACATTTAAGACACTTATGTATTTGTTCCTGGGGAGAAGGAACATAAAATACTCAAGATGG--ATA-TTG-ATTTGTTCA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30148197 164 - 170955103 GGGAAAGGGTGATGACTTACCAGGAGGACTTGCATCCTTTTATTTTCTCTTGACTGGATTTCTTGAATCTCCTCTCTCTCTTTTCTTAGACATTTAAGACACTTATGTATTTGTTCCTGGGGAGAAGGAACATAAAATACTCAAGATGG--ATA-TTG-ATTTGTTCA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     397406 164 +   1495729 GGGAAGGGGTGATGACTTACCAGGAGGACTTGCATCCTTTTATTTTCTCTTGACTGGATTTCTTGAATCTCCTCTCTCTCTTTTCTTAGACATTTAAGACACTTATGTATTTGTTCCTGGGGAGAAGGAACATAAAATACTCAAGATGG--ATA-TTG-ATTTGTTCA-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     499207 164 -    863181 GGGAAGGGGTGATGACTTACCAGGAGGACTTGCATCCTTTTATTTTCTCTTGACTGGATTTCTTGAATCTCCTCTCTCTCTTTTCTTAGACATTTAAGACACTTATGTATTTGTTCCTGGGGAGAAGGAACATAAAATACTCAAGATGG--ATA-TTG-ATTTGTTCA-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29647721 164 -  71996105 GGGAAGGGGTGATGACTTACCAGGAGGACTTGCATCCTTTTATTTTCTCTTGACTGGATTTCTTGAATCTCCTCTCTCTCTTTTCTGAGACATTTAAGACACTTATGTATTTGTTCCTGGGGAGAAGGAACATAAAATACTCAAGATGG--ATA-TTG-ATTTGTTCA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     380570 164 -    735854 GGGAAGGGGTGATGACTTACCAGGAGGACTTGCATCCTTTTATTTTCTCTTGACTGGATTTCTTGAATCTCCTCTCTCTCTTTTCTTAGACATTTAAGACACTTATGTATTTGTTCCTGGGGAGAAGGAACATAAAATACTCAAGATGG--ATA-TTG-ATTTGTTCA-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     286100 164 -   1829203 GGGAGGGGGTGATGACTTACCAGGAGGACTTGCATCCTTTTATTTTCTCTTGACTGGATTTCTTGAATCTCCTCTCTCTCTTTTCTTAGACATTTAAGACACTTATGTATTTGTTCCTGGGGAGAAGGAACATAAAATACTCAAGATGG--ATA-TTG-ATTTGTTCA-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30485925 163 + 171630274 GGGA-GGGGCGGTAACCTACCAGGAGGACTTGTATCCTTTTATTTTCTCTTGACTGGATCTCTTGAATCTCCTCTCTTTCTTTTCTTAGATGCTTAAGACACTTATGTATTTGTTCCTGGGGAGAAGGAACATAAAATATTCAAGATGG--ATA-ATG-ATTTGTTCA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           292377 163 +    515838 GCGA-CGGGTGATGACCTACCAGGAGAACTTGTATCCTCTTATTTTCTCTTGACTGGATTTCTTGAATCGCCTCTCTTTCTTTTCTTAGACGCTTAAGACACTTATGTATTTGTTCCTGGGGAGAAGCAACATAAAACACTCAAGATGG--GAA-ATG-ATTTGTTCA-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     921205 163 -   1771730 GGGA-GGGGTGATGACCTACCAGGAGGACTTGTATCCTTTTATTTTCTCTTGACTGGATTTCTTGAATCTCCTCTCTTTCTTTTCTTAGACACTTAAGACACTTATGTATTTGTTCCTGGGGAGAAGGAACATAAAATACTCAAGATGG--GAA-ATG-ATTTGTTCA-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     102234 163 -    486031 GGGA-GGGGTGATGACCTACCAGGAGGACTTGTATCCTTTTATTTTCTCTTGACTGGATTTCTTGAATCTCCTCTCTTTCTTTTCTTAGACACTTAAGACACTTCTGTATTTGTTCCTAGGGAGAAGGAACATAAAATACTCAAGATGG--AAA-ATG-ATTTGTTCA-
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               378413 165 + 123392446 GGGAAGGGATGAGGACCTACCAGCAGGACTTGTATTCGTTTCTTTTCCCTTGACTGGATTTCTTGGAGTTCCTCTCTCTCTTTTCTTAGACACTTGAGACATCTTTCTATTTGCTCCTGGGGAGAAGGAATTTAAAACACCTAAGAGGG--AAACATG-ATTTGTTCA-
i micMur3.chr6             I 505 I 562
s proCoq1.NW_012149775v1     195987 165 -   1411461 GGGAAGGGGTGAGGACCTACCAGCAGGACTTGTATTCTCTTCTTTTCCCTTGACTGGATTTCTTGAATCTCCTCTCTCTCTTTTCTTAGACACTTGAGACATTTTTCTATTTGCTCCTGGGGAGAAGGAATGTAAAACACCTAAGAGGG--AAACATG-ATTTGTTCA-
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           337272 167 +  18854210 GAGAAGGAGTGACGACCTACCAGGAGGACTTGTATTCTTTTCTTTTCCCTTGACTGGATTTCTTGAATCTCTTCTCTTTCTTTTCTTAGACACTGAAGACATTTTTGTATTTGTTCCTGGGGAGAAGGAATATAAAATACCTAAGATGGAAAAAAATT-ATTTGTGCA-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58115485 162 -  94987271 ggga--gggtggagacgtaccaggagcacctgtattcttttgttttctcttgactGGGTTTCTTGAATCTCTTCTCTCTCTTTCCTTAGACACACGAGACACTTCTGTATTTGTTCCTGGGTAGAAGGAGCATGAAGTA-TTAAGATGC--AGA-AAGTAACTGTAGA-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26355007 151 +  26524999 GGGAAGGGACAGCGACCTACTAGGAGGACTTGTATCCGCTGGTTTTCTCTCGACTGGATTCTTTGAATCTCCTCTCTCTCTCTTCTCAGACACTCAAGACACTTCTGTATTTGCTCCTGGAGGGACAGAGTAGGAA---------------ACA-ATG-GCTTGTGCA-
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            46947 156 +     53444 -GGCAGGGAAGCTGACC-ACCAGGAGGACGTGGAGTCTCTGACTCTCTCTTGCCTGGATTCCTTGAATCTC--CTCTGTCCTTTCTCAGACTCTCAAGACACTTCAGAATTTGTTCCTGGGGAGAAGGAACATGAAATATTTAA-------AAT-ATT-ATTTGTTGTA
i dasNov3.JH567297         C 0 C 0

a score=1254798.000000
s hg38.chr6_GL000254v2_alt  1503370 118 +   4827813 GGTTTGTCTGGTCATCTGACCCTCTGCCTCCAGGAATGAAATG------------------G-CCCCAG------GAGAGG---AGTCCCTTCCTT------------------------------------------------AGCTGACAATCCCCGAGCCTT-CACCACCCTGACAGCTT--------------------------ACTCCCTTTGGG
s panTro5.chr6             30372190 118 + 175400573 GGTTTGTCTGGTCATCTGACCCTCTGCCTCCAGGAATGAAATG------------------G-CCCCAG------GAGAGG---AGTCCCTTCCTT------------------------------------------------AGCTGACAATCCCTGAGCCTT-CACCACCCTGACAGCTT--------------------------ACTCCCTTTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30606515 118 + 173848474 GGTTTGTCTGGTCATCTGACCCTCTGCCTCCAGGAATGAAATG------------------G-CCCCAG------GAGAGG---AGTCCCTTCCTT------------------------------------------------AGCTGACAATCCCCGAGCCTT-CACCACCCTGACAGCTT--------------------------ACTCCCTTTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     314251 118 +   2037526 GGTTTGTCTGGTCATCTGACCCTCTGCCTCCAGGAATGAAATG------------------G-CCCCAG------GAGAGG---AGTCCCTTCCTT------------------------------------------------AGCTGACAATCCCTGAGCCTT-CACCACCCTGACAGCTT--------------------------ACTCCCTTTGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74980691 118 + 122973662 GGTTTGTCTTGTCATCTGACCCTCTGCCTCCAGGAATGAAATG------------------G-CCCCAG------GAGAGG---AGTCTCTTCCTT------------------------------------------------AGCTGACAATCCCCGGGCCTT-CACCGCCCTGACAGCTT--------------------------ACTCCCTTTGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30858871 118 + 172585720 GGGTTGTCTTGTCATCTGACCCTCTGCCTCCAGGAATGAAGTG------------------G-CCCCAG------GAGAGG---AGTCTCTTCCTT------------------------------------------------AGCTGACAATCCCCGAGCCTT-CACCACCCCAACAGCTT--------------------------AGTCCCTTTAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30148361 118 - 170955103 GGGTTGTCTTGTCATCTGACCCTCTGCCTCCAGGAATGAAGTG------------------G-CCCCAG------GAGAGG---AGTCTCTTCCTT------------------------------------------------AGCTGACAATCCCCGAGCCTC-CACCACCCTGACAGCTT--------------------------AGTCCCGTTAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     397570 118 +   1495729 GGGTTGTCTTGTCATCTGACCCTCTGCCTCCAGGAATGAAATG------------------G-CCCCAG------GAGAGG---AGTCTCTTCCTT------------------------------------------------AGCTGACAATCCCCGAGCCTC-CACCACCCTGACAGCTT--------------------------CGTCCCTTTAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     499371 118 -    863181 GGGTTGTCTTGTCATCTGAGCCTCTGCCTCCAGGAATGAAGTG------------------G-CCCCAG------GAGAGG---AGTCTCTTCCTT------------------------------------------------AGCTGACAATCCCCGAGCCTC-CACCGCCCTGACAGCTT--------------------------CGTCCTTTTAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29647885 118 -  71996105 GGGTTGTCTTGTCATCTGACCCTCTGCCTCCAGGAATGAAATG------------------G-CCCCAG------GAGAGG---AGTCTCTTCCTT------------------------------------------------AGCTGACAAACCCCGAGCCTT-CCCCGCCCTGAGAGCTT--------------------------CCTTCCTTTAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     380734 118 -    735854 GGGTTGTCTTGTCATCTGAGCCTCTGCCTCCAGGAATGAAGTG------------------G-CCCCAG------GAGAGG---AGTCTCTTCCTT------------------------------------------------AGCTGACAATCCCCGAGCCTC-CACCGCCCCAACAGCTT--------------------------AGTCCCTTTAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     286264 118 -   1829203 GGGTTGTCTTGTCATCTGAGCCTCTGCCTCCAGGAATGAAATG------------------G-CCCCAG------GAGAGG---AGTTTCTTCCTT------------------------------------------------AGCTGACAATCCCCGAGCCTT-CACCGCCCTGACAGCTT--------------------------AGTCCCTTTAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30486088 130 + 171630274 GGGTTGTCATGTCATCTGACCCTCTGCCTCCAGGAATGAAATG------------------G-CTCCAG------GAGAGT---AGTCTCTTCCTT------------------------------------------------AGCTGACAATGCCCAAGCCTT-CCCCGCCCTGACAGCTT--------------ATGCCCTGACAGACTCCCTTTGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           292540 115 +    515838 GGGTTGTCATGTCATCTGACCCTCTGCCTCCAGGAATGAAATG------------------G-CTCCAG------GAGAGG---AGTCTCTTCCTT------------------------------------------------AGCTGACAATGCCCAAGCCTT-CTC-----------------------------TGCCCTGACAGACTCCCTTTGAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     921368 130 -   1771730 GGGTTGTCATGTCATCTGACCCTCTGCCTCCAGGGATGAAATG------------------G-CTCCAG------GAAAGG---AGTATCTTCCTT------------------------------------------------AGCTGACAATGCCCAAGCCTT-CTCCGCCCTGAGAGCTT--------------ACGCCCTGACAGACTCCCTTTGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     102397 130 -    486031 GGGTTGTCATGTCATCTGACCCTCTGCCTCCAGGAATGAAATG------------------G-CTCCAG------GAGAGT---TGTCTCTTCCTT------------------------------------------------AGCTGACAATGCCCAAGCCTT-CTCCGCCCTGACAGCTT--------------ATGCCCTGACAGACTCCTTTTGAG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     196152 116 -   1411461 AGGGTGTCAGCTCATCCAGCCC-CCACCTCCAGG-GTGACGTG------------------G-CCCCAG------GAAAGG---GGTGTCTCCCTG------------------------------------------------GGTTGACAAGGCCTGAGCCTG-TGCCTCCCTGACAGCTC--------------------------ACTCTCTTTGGG
i proCoq1.NW_012149775v1   C 0 I 18
s otoGar3.GL873550           337439 119 +  18854210 GAGGTGTCACCTCATCCAACCCTCTACTTCCAGGAATGAAATG------------------GCCCCCAG------GAAAAG---TGTCTCTCCCCT------------------------------------------------AGCTGACAATGCCTGACCCTT-CTACACCCTGACAGCTT--------------------------ACTCTCTTTGGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58115647 209 -  94987271 GGGATGTC-------CCTCCCTTCTATGCGTGGAAGCAAAGTGCGCTGGGGATGAGTGTGAA-CCCCAGCACCTTGAGAGATTCAGGGTCTTCGTTCTTGTTCTCAttttgaggctggatctcatgtagtccaggcttacctcaaactcaggatcttcttgcctc-agttttcccaacagtaggatcataggtgagcacccccaga---cctggcCTTGAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26355158  99 +  26524999 --------------TGGGGGTCTCTGCCTCTGGGGTGGACA--------------------G-CCCTGA------GGACGG---GACCCCTGCCCA------------------------------------------------CACTGACTGTGCC--AGTCCT-AAC-GTCCTGGCAGGCT--------------------------GCTCTCCCCAGC
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            47103 101 +     53444 -GGCTGTCATCTCACC-------CCTCCTCTGTGA--------------------------G-ACCCAG------GA-AGG---AACCACGGCCGT------------------------------------------------AGCTGACCCTGCCTGGACCTCACTCCTCCTGGACGGCGT--------------------------GTGCTCTTTGG-
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               378578 562 + 123392446 I

a score=236837.000000
s hg38.chr6_GL000254v2_alt  1503488 20 +   4827813 TCTTCTTCCTCTTGATTTGT
s panTro5.chr6             30372308 20 + 175400573 TCTTGTTCCTCTTGATTTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30606633 20 + 173848474 TCTTGTTCCTCTTGATTTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     314369 20 +   2037526 TCTTGTTCCTCTTGATTTGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74980809 20 + 122973662 TCTTGTTCCTCCTGATTTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30858989 19 + 172585720 TC-TGTTCCTCTTGATTTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30148479 19 - 170955103 TC-TGTTCCTCTTGATTTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     397688 19 +   1495729 TC-TGTTCCTCTTGATTTGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     499489 19 -    863181 TC-TGTTCCTCTTGATTTGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29648003 19 -  71996105 TC-TGTTCCTCTTGATTTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     380852 19 -    735854 TC-TGTTCCTCTTGATTTGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     286382 20 -   1829203 TCTTATTCCTCTTGATTTGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30486218 20 + 171630274 TCTTGTTCCTCTTGATTCGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           292655 20 +    515838 TCTTGTTCCTCTTGATTTGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     921498 20 -   1771730 TCTTGTTCCTCTTGATTTGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     102527 20 -    486031 TCTTGTTCCTCTTCATTTGT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           337558 20 +  18854210 TCTAATTCCTCTTGTTTTGT
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58115856 20 -  94987271 TCTTATGACTCTTGCTTTAT
i mm10.chr17               C 0 I 1
s canFam3.chr35            26355257 20 +  26524999 TCTCTTCCTTCCAGCTTTGC
i canFam3.chr35            C 0 I 1
s dasNov3.JH567297            47204 20 +     53444 TCCTGTTCTTCCTGATCTGT
i dasNov3.JH567297         C 0 I 1
e micMur3.chr6               378578 562 + 123392446 I
e proCoq1.NW_012149775v1     196268 18 -   1411461 I

a score=3025202.000000
s hg38.chr6_GL000254v2_alt  1503508 238 +   4827813 CTCTAAGACTTTGGATCA---GGACTTT-----CCCCCTTTATCCTGTGCCATTAGAGGCTGTGACTTGGTTTTCCCACTTGAG----TCTT----TCTTCAGGTTTAACATTCTATTGTGTTTTGCTTCAGGTAAGTGGTATCTGGGGTCTGTACTGAGTT----------TGATATGCCCC------GCACTGAAATCATTCTGAGTTTCCGA-CTCATCCCA-AA-GGAACATGTGTAAATAACAACCCTCCCTTGTTACTGAAATCAAT
s panTro5.chr6             30372328 238 + 175400573 CTCCAAGACTTTGGGTCA---GGACTTT-----TCCCCTTTATCCTGTGCCATTAGAGGCGGTGACTTGGTTTTCCCACTTGAG----TCTT----CCTTCAGGTTTAACATTCTATTGTGTTTTGCTTCGGGTAAGTGGTATCTGGGGTCTGTACTGAGTT----------TGATATGCCCC------GCACTGAAATCATTCTGAGTTTCCGA-CTCATCCCA-AA-GGAACATGTGTAAATAACAACCCTCCCTTGTTACTGAAATCAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30606653 238 + 173848474 CTCCAAGACTTTGGGTCA---GGACTTT-----TCCCCTTTATCCTGTGCCATTAGAGGCGGTGACTTGGTTTTCCCACTTGAG----TCTT----CCTTCAGGTTTAACATTCTATTGTGTTTTGCTTCGGGTAAGTGGTATCTGGGGTCTGTACTGAGTT----------TGATATGCCCC------GCACTGAAATCATTCTGAGTTTCCTA-CTCATCCCA-AA-GGAACATGTGTAAATAACAACCCTCCCTTGTTACTGAAATCAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     314389 238 +   2037526 CTCCAAGACTTTGGGTCA---GGACTTT-----CCCCCTTTATCCTGTGCCATTAGAGGCTGTGACTTGGTTTTCCCACTTGAG----TCTT----TCTTCAGGTTTAACATTCTATTGTGTTTTGCTTCGGGTAAGTGGTATCTGGGGTCTGTACTGAGTT----------TGATATGCCCC------GCACTGAAATCATTCTGAGTTTCCGA-CTCATCCCA-AA-GGAACATGTGTAAATAACAACCCTCCCTTGTTACTGAAATCAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74980829 238 + 122973662 CTCCAAGACTTTGGGTCA---GGACTTT-----CCCCCTTTATCCTGTGCCATTAGAGGCTGTGACTTGGTTTTCCCACTTGAG----TCTT----TCTTCAGGTGAAACATTCTATTGTGTTTTGCTTCGGGTAAGTGGTATCTGGGGTCTGTCCTGAGTT----------TGATATACCCT------GCACTGAAATCATTCTGAGTTTCCGA-TACATCCCA-AA-GGAACATGTGTAAATAACAACCCTCCCTTGTTACTGAAATCAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30859008 235 + 172585720 CTCCACGACTTTGGGTCA---GGACTTT------CCCCTTTCTCCTGTGCCACTAGAGGCTGTGACTTGGTTTTCCCGCTTGAG----TCTT----TCTTCAGGTTAAACATTCTATTGTGTTTTGCTTC-GGTAAGTGGTATCTGGGGTCTGTCCTGAGTT----------TGATATGCCCT------GCACTGAAATCATTCC-AGTTTCCGA-CACATCCCA-AA-GGAACATGTGTAAATAATAACCCTCCCTTGTTACTGGAATCAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30148498 235 - 170955103 CTCCACGACTTTGGGTCA---GGACTTT------CCCCTTTCTCCTGTGCCACTAGAGGCTGTGACTTGGTTTTCCCACTTGAG----TCTT----TCTTCAGGTTAAACATTCTATTGTGTTTTGCTTC-GGTAAGTGGTATCTGGGGTCTGTCCTGAGTT----------TGATATGCCCT------GCACTGAAATCATTCC-AGTTTCCAA-CACATCCCA-AA-GGAACATGTGTAAATAATAACCCTCCCTTGTTACTGGAATCAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     397707 235 +   1495729 CTCCACGACTTTGGGTCA---GGACTTT------CCCCTTTCTCCTGTGCCACTAGAGGCTGTGACTTGGTTTTCCCACTTGAG----TCTT----TCTTCAGGTTAAACATTCTATTGTGTTTTGCTTC-GGTAAGTGGTATCTGGGGTCTGTCCTGAGTT----------TGATATGCCCT------GCACTGAAATCATTCC-AGTTTCCGA-CACATCCCA-AA-AGAACATGTGTAAATAATAACCCTCCCTTGTTACTGGAATCAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     499508 235 -    863181 CTCCACGACTTTGGGTCA---GGACTTT------CCCCTTTCTCCTGTGCCACTAGAGGCTGTGACTTGGTTTTCCCACTTGAG----TCTT----TCTTCAGGTTAAACATTCTATTGTGTTTTGCTTC-GGTAAGTGGTATCTGGGGTCTGTCCTGAGTT----------TGATATGCCCT------GCACTGAAATCATTCC-GGTTTCCGA-TACATCCCA-AA-GGAACATGTGTAAATAATAACCCTCCCTTGTTACTGGAATCAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29648022 236 -  71996105 CTCCAAGACTTTGGGTCA---GGACTTT------CCCCTTTACCCTGTGCCACTAGAGGCTGTGACTTGGTTTTCCCACTTGAG----TCTT----TCTTCAGGTTAAACATGTTATTGTGTTTTGCTTCGGGTAAGTGGTATCTGGGGTCTGTCCTGAGTT----------TGATATGCCCT------GCACTGAAATCATTCC-AGTTTCCAG-CACATCCCA-AA-GGAACATGTGTAAATAACAACCCTCCCTTGTTACTGGAATCAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     380871 235 -    735854 CTCCACGACTTTGGGTCA---GGACTTT------CCCCTTTCTCCTGTGCCACTAGAGGCTGTGACTTGGTTTTCCCACTTGAG----TCTT----TCTTCAGGTTAAACATTCTATTGTGTTTTGCTTC-GGTAAGTGGTATCTGGGGTCTGTCCTGAGTT----------TGATATGCCCT------GCACTGAAATCATTCC-AGTTTCCCA-CACATCCCA-AA-GGAACATGTGTAAATAATAACCCTCCCTTGTTACTGGAATCAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     286402 236 -   1829203 CTCCAAGATTTTGGGTCA---GGACTTT------CTTCTTTATCCTGTGCCACTAGAGGCTGTGACTTGGTTTTCCCACTTGAG----TCTT----TCTTCAGGTTAAACATTCTATCGTGTTTTGCTTCGGGTAAGTGGTATCTGGGGTCTGTCCTGAGTT----------TGATACGCCCT------GCACTGAAATCATTCC-AGTTTCCGA-CACATCCCA-AA-GGAACATGTGTAAATAATAACCCTCCCTTGTTACTGGAATCAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30486238 236 + 171630274 CTCAAAGACTTTTGATCA---GGACTTT-----CCCCCTTTATCCTGTGCCATTGGAGGCTGTGACTTGGTTTTCCCACTTAAG----TCTT----TCTTCAGGTTAAACATCCTACTTTGTTTTGTTTCAGGTAAGTGGTATCTGTGGTCAGTCCTGAGCT----------TGATATGCCCT------GCACTGAAATCATTCCAAGTTTCCGA-CTCATCCCA-AA-GAAAC--GTGCAAATAACAGCCCTCCCTTGTTACTGGAATCAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           292675 238 +    515838 CTCCAAGACTTTTGATCA---GGACTTT-----CCCCCTTTATCCTGTGCCACTAGAGGCTGTGACTTGGTTTTCTCACTTGAG----TCTT----TCTTCAGGTTAAACATCCTATTTTGTTCTGCTTCAGGTAAGTAATATCTGTGGCCAGTCCTGAGCT----------TGATATTCCCT------GCACTGAAATCATTCCAAGTTTCCGA-CTCATCCCA-AA-GAAACATGTGCAAATAACAACCCTCCCTTGTTACTGGAATCAAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     921518 236 -   1771730 CTCCAAGACTTTTGATCA---GGACTTT-------CTCTTTATCCTGTGCCATTAGAGGCTGTGACTTGGTTTTCCCACTTGAG----TCTT----TCTTCAGGTTAAACATCCTACTTTGTTTTGCTTCAGGTAAGTGGTATCTGTGGTCAGTCCTGAGCT----------TGATATGCCCT------GCACTGAAATCATTCCAAATTTCCGG-CTCATCCCA-AA-GAAACATGTGCAGATAACAACCCTCCTTTGTTACTGGAATCAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     102547 238 -    486031 CTCAAAGACTTTTGATCA---GGACTTT-----CCCCCTTTATCCTGTGCCATTAGAGGCTGTGACTTGGTTTTCCCACTTGAG----TCTT----TCTTCAGGCTAAACATCCTACTTTGTTTTGCTTCAGGTAAGTGGTGTCTGTGGTCAGTCCTGAGCT----------TGATATGCCCT------GCACTGAAATCATTCCAAGTTTCCGA-CTCATCCCA-AA-GAAACATGTACAAATAACAACCCTCCCTTGTTACTGGAATCAAT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     196286 236 -   1411461 CTCCAAGAATATTGATCA---GGGCTTC-----TCCCCTTTATCATGTGACATTACA-GCTGTGACTTTGTTTTCCCACTTGAG----CCTT----TCCTCAGGTTAAACATCCTGCTTCCTTTTGCTCG--TTAAGTAACATCTGGGATCTGTCCTGAGCT----------TGATATGCCTT------TCACTGAAATTCTTCCAAGTTTCCGA-CACGTCCCA-AAGGGAACACGTGCAAATAACGACCCTCTCTTTTTACTAGAATCAAT
i proCoq1.NW_012149775v1   I 18 C 0
s otoGar3.GL873550           337579 239 +  18854210 CTCCAAAAATTTTGATCA---GGGCTTT-----CTCCCTTTATCTTGTGACATTAGAGGTTGTGACTTGGTTTACCCATTTGAA----CCTT----TCTTCGGGGTAAACATCCTAATTCATTTTGCTTGTTTTAAGTGATATCTGGAATCTGTCCTGAGTT----------TGATGTGCCCT------TCACTGAAATTAGTCCAAGTTCCTGA-CATATCTCA-AAGGGAACATGTGCAAATAACAACCCTCCTTTCTTACTAGAATCAGT
i otoGar3.GL873550         I 1 I 295
s mm10.chr17               58115877 217 -  94987271 TCCTAGAGATTTTGAGCA---GGGCTTC-----CCCCCATTCTCATCTACCATCAAAGGTCATGACTTTGCTTCTCC-TTTGAG----CCCT----TCTCTGCGTTAAACA-GCTACCTACTTTTGCATCTGCCAAGTATTACCTA----------TGAGCT----------CCACATGTTCTTAGCTGGAACTGAAATCATGTC--------------ACCCAG-AG-GAAATACATGCAAACAACG--TCTCCCTTTTTACTAGAACCAAT
i mm10.chr17               I 1 C 0
s canFam3.chr35            26355278 229 +  26524999 CTCTGGAAACGCTGATCCCCTGAGCCCTGAGCCGTCCCCTCCGCCCAGGCCGGCACAAGCTGCTACTCAGTTTCCCCACCCGCG----CCCTGCTGTCTTCACGCTGAAGACCCTAATTAGATCTGTT----------------TGGGCCATGTTTGGAGCC----------TGACACGCCCT------TCTCTGAAAGCACCCCAACTTTCTGA-CATGTCTCAGAA-GGCATGCGTGCA---AACAGTCCTCTCTTGTGACAAGAATC---
i canFam3.chr35            I 1 C 0
s dasNov3.JH567297            47225 241 +     53444 CCCCAAGAATGTCCATCA---AGCCTGC---------CCTGATAAGGGGCCATCAGAGGCCAGGACTCAGTTT--CCACTCGAGCTTTCCTT----TCTTCAG--TAAGCATCCTAATTTG---TGTCTTTGTTAAGTGACATTGGGGATCTGTCCTGAACTTCTGAACTGATGATCTGCCTT------AT-TTGAAATTATTCTAAGTTTGTGCTCATGTCCCA-AAGGGAGTGAGTCCAAGTAACAACCCTCCCTTATGAACG-AATCAAT
i dasNov3.JH567297         I 1 C 0
e micMur3.chr6               378578 562 + 123392446 I

a score=913679.000000
s hg38.chr6_GL000254v2_alt  1503746 66 +   4827813 TATCTGTGTATGACTCCAGAGGGGAGAAGAAACTTGGGTAATGTAAAAATAATTGATAAATTG-TTT
s panTro5.chr6             30372566 66 + 175400573 TATCTGTGTATGACTCCAGAGGGGAGAAAAAACTTGGGTAATGTAAAAATAATTGATAAATTG-TTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30606891 66 + 173848474 TATCTGTGTATGACTCCAGAGGGGAGAAAAAACTTGGGTAATGTAAAAATAATTGATAAATTG-TTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     314627 67 +   2037526 TATCTGTGTATGACTCCAGAGGGGAGAAGAAACTTGGGTAATGTAAAAATAATTGATAAATTGTTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74981067 66 + 122973662 TATCTGTGTATGACTCCAGAGGGGAGAAGAAACTTGGGTAATGTAAAAATAATTGATAAATTG-TTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30859243 57 + 172585720 TATCTGTGTATGACTCCAAAGGGGAGAAGAAACTTGGGTAATGTAAAAATAA---------TG-TTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30148733 66 - 170955103 TATCTGTGTATGACTACAAAGGGGAGAAGAAACTTGGGTAATGTAAAAATAATTGATAAATTG-TTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     397942 66 +   1495729 TATCTGTGTATGACTCCAAAGGGGAGAAGAAACTTGGGTAATGTAAAAATAATTGATAAATTG-TTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     499743 66 -    863181 TATCTGTGTATGACTCCAAAGGGGAGAAGAAACTTGGGTAATGTAAAAATAATTGATAAATTG-TTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29648258 66 -  71996105 TATCTGTGTATGACTCCAAAGGGGAGAAGAAACTTGGGTAATGTAAAAATAATTGATAAATTG-TTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     381106 66 -    735854 TATCTGTATATGACTCCAAAGGGGAGAAGAAACTTGGGTAATGTAAAAATAATTGATAAATTG-TTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     286638 66 -   1829203 TATCTGTGTATGACTCCAAAGGGGAGAAGAAACTTGGGTAATGTAAAAATAATTGATAAATTG-TTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30486474 65 + 171630274 CACCTGTGTATGACTCCAGAAGGGAGAAGAAACTTGGGTAATGTAAAAA-AATTGATAAATTG-TTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           292913 66 +    515838 TACCTGTGTATGACTCCAGAAGGGAGAAGAAACTTGGATAATGtaaaaataattgataaattg-ttt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     921754 66 -   1771730 TACTTGTGTATGACTCCAGAAGGGAGAAGAAACTTGGGTAATATAAAAATAATTGATAAATTG-TTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     102785 66 -    486031 TACCTGTGTATGACTCCAGAAGGGAGAAGAAACTTGGGTAATGTAAAAATAATTGATAAATTG-TTT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     196522 66 -   1411461 AATCTGTGTAGGATTGCAGAGGGGAGGTGAAACTTGGGTAATGCAAAATTAATCCATGAATTG-TTT
i proCoq1.NW_012149775v1   C 0 I 156
s otoGar3.GL873550           338113 63 +  18854210 aaTCTGTGTATGATTCCAGAGGGGAGAAGACACTTGGATAACACAAAATTAATA---GAATTG-TTT
i otoGar3.GL873550         I 295 C 0
s mm10.chr17               58116094 63 -  94987271 AATCTAGAAATGGTACACAAGGTGAGAAGAAATTTAG---ATGCAAAAATAATTGATGCCCAG-TTT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26355507 60 +  26524999 ------TGTCAGGTTCCAGATGGGAGGAGAGGCTTACATAATATTAAAGTGGTCAATACACTG-TTT
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            47466 64 +     53444 CATCTGCGTGTGATTCTGGA-GTGAGAAGA-ACTCGGGTAATGCCAAAGTAATCAACAAAATG-CTT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               378578 562 + 123392446 I

a score=775835.000000
s hg38.chr6_GL000254v2_alt  1503812 73 +   4827813 TCAAAATTATTTGCTCCAGAA-TAGAGTTAGG------AACAGGTACACACACG---------A-------TAAATATGTGTGTTCAAAGATATAT
s panTro5.chr6             30372632 75 + 175400573 TCAAAATTATTTGCTCCAGAA-TACAGTTAGG------AACAGGTACACACACG-------TGA-------TAAATATGTGTGTTCAAAGATATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30606957 75 + 173848474 TCAAAATTATTTGCTCCAGAA-TAGAGTTAGG------AACAGGTACACACACA-------TGA-------TAAATATGTGTGTTCAAAGATATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     314694 75 +   2037526 TCAAAATTATTTGCTCCAGAA-TAGAGTTAGG------AACACGTACACACACA-------TGA-------TAAATATGTGTGTTCAAAGATATGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74981133 75 + 122973662 TCAAAATTATTTGCTCCAGAA-CAGAGTTAGG------AACAGGTACACACACA-------TGA-------TAAATATGTGTGTTCAAAGATATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30859300 75 + 172585720 TCAAAATTATTTGCTCCAGAA-TAGAGTTAGG------AACAGGTACACATACA-------TTA-------TAAATATGTGTGTTCAAAGACATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30148799 75 - 170955103 TCAAAATTATTTGCTCCAGAA-TAGAGTTAGG------AACAGGTACACATACA-------TTA-------TAAATACGTGTGTTCAAAGATATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     398008 75 +   1495729 TCAAAATTATTTGCTCCAGAA-TAGAGTTAGG------AACAGGTACACATACA-------TTA-------TAAATATGTGTGTTCAAAGATATAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     499809 75 -    863181 TCAAAATTATTTGCTCCAGAA-TAGAGTTAGG------AACAGGTACACATACA-------TTA-------TAAATATGTGTGTTCAAAGATATAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29648324 75 -  71996105 TCAAAATTATTTGCTCCAGAA-TAGAGTTAGG------AACAGGTACACACACA-------TTA-------TAAATATGTGTGTTCAAATATATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     381172 75 -    735854 TCAAAATTATTTGCTCCAGAA-TAGAGTTAGG------AACAGGTACACATACA-------TTA-------TAAATATGTGTGTTCAAAGATATAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     286704 75 -   1829203 TCAAAATTATTTGCTCCAGAA-TAGAGTTAGG------AACAGGTACACACACA-------TTA-------TAAATATGTGTATTCAAAGATATAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30486539 72 + 171630274 TAAAAATTATTTGCTCCAGAA-T--AGTTAGG------AACA-GTACACACACA-------TAA-------TAAATATGTGTGTTCAAAGATACCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           292979 72 +    515838 taaaaaatatttGCTCCAGAA-T--AGTTAGG------AACA-GTACACACACA-------TAA-------TAAATATGTGTATTCAAAGATACCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     921820 42 -   1771730 TAAAAATTATTTGCTCCAG------------------------------------------------------AATATGTGTGTTCAAAGATACCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     102851 72 -    486031 TAAAAATTATTTGCTCCAGAA-T--AGTTAGG------AACA-GTGCACACACA-------TAA-------TAAATATGTGTGTTCAAAGATACCT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           338176 79 +  18854210 TTAAAACTGTTTGTTCTAGAA-TAGAGTTAGA------AGCAGGTA-ACATACA-------TAAATGTC--CATACATATATGTTCAAAAATACGT
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58116157 78 -  94987271 ----TATAAATTGTTCTAGAT-TAGAGTTAGG------AACAAGCAAACACATAAATATCTATG-------TGTGTATGTGTGTTTAGAAATACAT
i mm10.chr17               C 0 I 117
s canFam3.chr35            26355567 78 +  26524999 TAAAAACTGTCCACTCTAGAA---GAGTCAGG------ATCAGGGACAGATGCA-------TGGAGGTC--CACATAGGGGCATCCAGAGATACCT
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            47530 89 +     53444 TATCAACTATTAGCTCTGGAAATAGAGTTAGGGTCATAAACAGGTACACACCCA-------TTAACGCCCATAAATATGTAATTTCAGAACTACAC
i dasNov3.JH567297         C 0 I 1
e micMur3.chr6               378578 562 + 123392446 I
e proCoq1.NW_012149775v1     196588 156 -   1411461 I

a score=802976.000000
s hg38.chr6_GL000254v2_alt  1503885  78 +   4827813 TAGAAT-----------------------------------------------------------TCTCACTATCAACTGCTAATTAACTAATTAAGACATC-CACACACA---GA------C--TTGTACTAAAAC--ATAATTCATAAG
s panTro5.chr6             30372707  78 + 175400573 TAGAAT-----------------------------------------------------------TCTCACTATCAACTGCTAATTAACTAATTAAGACATC-CACACACA---GA------C--TTGTACTAAAAC--ATAATTCATAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30607032  78 + 173848474 TAGAAT-----------------------------------------------------------TCTCACTATCAACTGCTAATTAACTAATTAAGACATC-CACACACA---GA------C--TTGTACTAAAAC--ATAATTCATAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     314769  78 +   2037526 TAGAAT-----------------------------------------------------------TCTCACTATCAACTGCTAATTAACTAATTAAGACATC-CACACACA---GA------C--TTGTACTAAAAC--GTAATTCATAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74981208  74 + 122973662 TAGAAT-----------------------------------------------------------TCTCACTATCAATTGCTAATTAAC----TAAGACATC-CACACACA---GA------C--TTGTACTAAAAC--ACAATTCATAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30859375  78 + 172585720 TAGAAA-----------------------------------------------------------TCTCACTATCAGTTGCTAATTAACTAATTAAGACATC-CACACACA---GA------C--TTGTACTAAAAC--ACAATTCATAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30148874  78 - 170955103 TAGAAA-----------------------------------------------------------TCTCACTATCAGTTGCTAATTAACTAATTAAGACATC-CACACACA---GA------C--TTGTACTAAAAC--ACAATTCATAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     398083  78 +   1495729 TAGAAT-----------------------------------------------------------TCTCACTATCAGTTGCTAATTAACTAATTAAGACATC-CACACACA---GA------C--TTGTACTAAAAC--ACAATTCATAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     499884  78 -    863181 TAGAAA-----------------------------------------------------------TCTCACTATCAGTTGCTAATTAACTAATTAAGACATC-CACACACA---GA------C--TTGTACTAAAAC--ACAATTCATAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29648399  78 -  71996105 TAGAAT-----------------------------------------------------------TCTCACTATCAGTCGCTAATTAACTAATTAAGACATC-CACACACA---GA------C--TTGTACTAAAAC--ACAATTCATAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     381247  78 -    735854 TAGAAA-----------------------------------------------------------TCTCACTATCAGTTGCTAATTAACTAATTAAGACATC-CACACACA---GA------C--TTGTACTAAAAC--ACAATTCATAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     286779  78 -   1829203 TAGAAT-----------------------------------------------------------TCTCAGTATCAGTTGCTAATTAACTAATTAAGACATC-CACACACA---GA------C--TTGTACTAAAAC--ACAATTCATAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30486611  77 + 171630274 TAGAAT-----------------------------------------------------------TCTCACTATCAATTGCTAATTAACTAGTTAAGTCATC-CACACTCA---GA------C--TTGTACTAAAAT--ACAATTCATAG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           293051  77 +    515838 TAGAAT-----------------------------------------------------------TCTCACTATCAATTGTTAATTAACTAGTTAAGACATC-CACACCCA---GA------C--TTGTACTAAAAT--ACAATTCACAG-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     921862  79 -   1771730 TAGAAT-----------------------------------------------------------TCTCACTATCAATTGCTAATTAACTAGTTAAGACATC-CACACCCA---GA------C--TTGTACTAAAATACACAATTCACAG-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     102923  77 -    486031 TAGAAT-----------------------------------------------------------TCTCACTATCAATTGCTAATTAACTAGTTAAGACATC-CACACCCA---GA------C--TTGGACTAAAAT--ACAATTCATAG-
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           338256  71 +  18854210 TAGAAC-----------------------------------------------------------TCTCAACATCAAATGCTAATTAAC----TAAGACGTC-CACACATACTTGT------A--TTATACTAAAAT--ACAATC------
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58116352 138 -  94987271 tagaactagaagaatcagaaattcaaggtcatcctaggctatataattagtctgaggcaagctggtctcactatgaaaAGATCACTAATAAATTGCTACATCATACATACA---AATGCCTGC--TCATAACAAAAT--ATGGTA------
i mm10.chr17               I 117 C 0
s canFam3.chr35            26355645  67 +  26524999 ----GC-----------------------------------------------------------CCTCACCGTCAAATGCTAGTGAAC----TAACATGTC-CAGACAGACCCCA------C--TTGTATCACAGC--GCAGTG------
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            47620  74 +     53444 TAGAAC-----------------------------------------------------------CCACA-----AAGTGCAAGTTAACTA-TTAACACACT-CCTAGACA---AC------CGTTTGTCCTAAAGC--ACAACACAGGag
i dasNov3.JH567297         I 1 I 1209
e micMur3.chr6               378578 562 + 123392446 I
e proCoq1.NW_012149775v1     196588 156 -   1411461 I

a score=69163.000000
s hg38.chr6_GL000254v2_alt  1503963 7 +   4827813 CACAATG
s panTro5.chr6             30372785 7 + 175400573 CACAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30607110 7 + 173848474 CACAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     314847 7 +   2037526 CACAATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74981282 7 + 122973662 CACAATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30859453 7 + 172585720 CATAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30148952 7 - 170955103 CACAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     398161 7 +   1495729 CATAATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     499962 7 -    863181 CACAATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29648477 7 -  71996105 CACAATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     381325 7 -    735854 CACAATG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     286857 7 -   1829203 CACAATG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30486688 6 + 171630274 -ACAATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           293128 6 +    515838 -ACAATG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     921941 6 -   1771730 -ACAATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     103000 6 -    486031 -ACAATG
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               378578 562 + 123392446 I
e mm10.chr17               58116490 0 -  94987271 C
e dasNov3.JH567297            47694 1209 +     53444 I
e proCoq1.NW_012149775v1     196588 156 -   1411461 I
e canFam3.chr35            26355712 0 +  26524999 C
e otoGar3.GL873550           338327 0 +  18854210 C

a score=55499.000000
s hg38.chr6_GL000254v2_alt  1503970 4 +   4827813 CATA
s panTro5.chr6             30372792 4 + 175400573 CATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30607117 4 + 173848474 CATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     314854 4 +   2037526 CATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74981289 4 + 122973662 CATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30859460 4 + 172585720 CATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30148959 4 - 170955103 CATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     398168 4 +   1495729 CATA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     499969 4 -    863181 CATA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29648484 4 -  71996105 CATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     381332 4 -    735854 CATG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     286864 4 -   1829203 CATA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30486694 4 + 171630274 CATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           293134 4 +    515838 CATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     921947 4 -   1771730 CATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     103006 4 -    486031 CATA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     196744 4 -   1411461 CATA
i proCoq1.NW_012149775v1   I 156 C 0
s otoGar3.GL873550           338327 4 +  18854210 TATA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58116490 2 -  94987271 --TA
i mm10.chr17               C 0 I 2
s canFam3.chr35            26355712 4 +  26524999 AGTA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               378578 562 + 123392446 I
e dasNov3.JH567297            47694 1209 +     53444 I

a score=685308.000000
s hg38.chr6_GL000254v2_alt  1503974 45 +   4827813 AACAACTAAAACCAGC-ACACATTCATTTAATGACAGATAAAATGG
s panTro5.chr6             30372796 45 + 175400573 AACAACTAAAACCAGC-ACACATTCATTTAATGACAGATAAAATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30607121 45 + 173848474 AACAACTAAAACCAGC-ACACATTCATTTAATGACAGATAAAATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     314858 45 +   2037526 AACAACTAAAACCAGC-ACACATTCATTGAATGACAGATAAAATGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74981293 45 + 122973662 AACAACTAAAACCAGC-ACACACTCATTTAACGACAGATAAAATGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30859464 45 + 172585720 AACAACTAAAACTAGC-ACACACTCATTTAATGACAGATAAAATGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30148963 45 - 170955103 AATAACTAAAACTAGC-ACACACTCATTTAATGACAGATAAAATGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     398172 45 +   1495729 AACAACTAAAACTAGC-ACACACTCATTTAATGACAGATAAAATGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     499973 45 -    863181 AATAACTAAAACTAGC-ACACACTCATTTAATGACAGATAAAATGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29648488 45 -  71996105 AACAACTAAAACTAGC-ACACACTCATTTAATGACAGATAAAATGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     381336 45 -    735854 AATAACTAAAACTAGC-ACACACTCATTTAATGACAGATAAAATGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     286868 45 -   1829203 AACAACTAAAACTAGC-ACACACTCATTTAATGACAGATAAAATGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30486698 45 + 171630274 AACAACTAAAACCAGC-AGACACTTATTTAATGACAGATAAAATGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           293138 45 +    515838 AACAACTAAAACCAGC-ACACACTCATTTAATGACAGGTAAAATGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     921951 45 -   1771730 AACAACTAAAACCAGC-ACACACTCATTTAGTGTCAGATAAAACGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     103010 45 -    486031 AACAACTAAAACCAGC-ACACACTCATTTAATGACAGATAAAATGA
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               379140 45 + 123392446 AACAACTAGCACCAGC-ACACACTCACTTAGTGACAGATTAAATGG
i micMur3.chr6             I 562 I 2
s proCoq1.NW_012149775v1     196748 45 -   1411461 AACAACTAAAACCAGC-ACGCACTCACTTAATGACAGATAAAATGG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           338331 43 +  18854210 AACAACTAAAACCAGC-ACACACTAATTTAATAAC--ATAAAATGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58116494 46 -  94987271 AGCAACTAAAACCAGCAATGCACTCACTTAATGGAAAATAAAAAAG
i mm10.chr17               I 2 I 2
s canFam3.chr35            26355716 41 +  26524999 CATGACTAAGAGGAGC-ACG----TGGCTGATGATAGACACAATTG
i canFam3.chr35            C 0 C 0
e dasNov3.JH567297            47694 1209 +     53444 I

a score=179957.000000
s hg38.chr6_GL000254v2_alt  1504019 14 +   4827813 CATGCCACA-TACAT
s panTro5.chr6             30372841 14 + 175400573 CATGCCACA-TACAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30607166 14 + 173848474 CATGCCACA-TACAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     314903 14 +   2037526 CATGCCACA-TACAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74981338 14 + 122973662 CATGCCACA-TATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30859509 14 + 172585720 CATGCCACA-TATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30149008 14 - 170955103 CATGCCACA-TATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     398217 14 +   1495729 CATGCCACA-TGTAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     500018 14 -    863181 CATGCCACA-TATAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29648533 14 -  71996105 CATGCCACA-TATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     381381 14 -    735854 CATGCCACA-TATAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     286913 14 -   1829203 CATGCCACA-TGTAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30486743 14 + 171630274 CATGCCACA-TATAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           293183 14 +    515838 CATGCCACA-TATAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     921996 14 -   1771730 CATGCCACA-TATAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     103055 14 -    486031 CATGCCACA-TATAT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     196793 14 -   1411461 CATGCCACA-TATAT
i proCoq1.NW_012149775v1   C 0 I 5
s otoGar3.GL873550           338374  7 +  18854210 CATGCCA--------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58116542 14 -  94987271 TATGCCACA-AATAT
i mm10.chr17               I 2 C 0
s canFam3.chr35            26355757 10 +  26524999 -----CACATTATGT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               379185  2 + 123392446 I
e dasNov3.JH567297            47694 1209 +     53444 I

a score=1170896.000000
s hg38.chr6_GL000254v2_alt  1504033  96 +   4827813 TTACCCAGCCTGAATATATGTAAACACGAATTTATTCACAAACAGGAGCTCT----CAGTTACAC-TTACACACTCAAATATATACATACTCAGAC--TCCCA
s panTro5.chr6             30372855  96 + 175400573 TTACCCAGCCTGAATATATGTAAACATGAATTTATTCACAAACAGGAGCTCT----CAGTTACAC-TTACACACTCAAATATATACATACTCAGAC--TCCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30607180  96 + 173848474 TTACCCAGCCTGAATATATGTAAACATGAATTTATTCACAAACAGGAGCTCT----CAGTTACAC-TTACACACTCAAATATATACATACTCAGAC--TCCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     314917  96 +   2037526 TTACCCAGCCTGAATATATGTAAACATGAATTTATTCACAAACAGGAGCTCT----CAGTTACAC-TTACACACTCAAATATATACATACTCAGAC--TCCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74981352  96 + 122973662 TTACCCAACCCGAGTATATGTAAACACGAATTTATTCAAAAACAGGAGCTCT----CAGTTACAC-TTCCACACTCAAATACATACATACTCAGAC--TCCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30859523  95 + 172585720 TTACCCAACCTGAATATATGTAAACATGAATTT-TTCACAAACAGGAGCTCT----CAGTTacac-tcacacactcaaatacatacatactcagac--gccca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30149022  95 - 170955103 TTACCCAACCTGAATATATGTAAACATGAATTT-TTCACAAACAGGAGCTCT----CAGTTacac-tcacacactcaaatacatacatactcaggc--tccca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     398231  95 +   1495729 TTACCCAACCTGAATATATGTAAACATGAATTT-TTCACAAACAGGAGCTCT----CAGTTACAC-TCACACACTCAAATACATACATACTCAGAC--TCCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     500032  95 -    863181 TTACCCAACCTGAATATATGTAAACATGAATTT-TTCACAAACAGGAGCTCT----CAGTTacac-tcacacactcaaatacatacatactcagac--tccca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29648547  95 -  71996105 TTACCCAACCTGAATATATGTAAACATGAATTT-TTCACAAACAGGAGCTCT----CAGTTacac-tcacacactcaaatacatacatactcagac--tccca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     381395  95 -    735854 TTACCCAACCTGAATATATGTAAACATGAATTT-TTCACAAACAGGAGCTCT----CAGTTacac-tcacacactcaaatacatacatactcagac--tccca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     286927  95 -   1829203 TTACCCAACCTGAATATATGTAAACATGAATTT-TTCACAAACAGGAGCTTT----CAGTTacac-tcacacactcaaatacatacatactcagac--tccca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30486757  95 + 171630274 TTA-CCAACATGAATATATGTAAACACGAATTTATTCACAAACAGGAATTCT----CAGTTacac-ttacacactcaaatacatacacactcaaac--tccca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           293197  96 +    515838 TTACCCAACCTGAATACATGTAAACACGAATTTATTTGCAAACAGGAACTCT----CAGTTacac-ttacacactcaaatacatacacactcagac--tccca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     922010  95 -   1771730 TTA-CCAACCTGAATATATGTAAACACGAATTTATTCGCAAACAGGAactct----cagttacac-ttacacactcaaatatatacacactcagac--tccca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     103069  96 -    486031 TTACCCAACCTGAATATATGTAAACACGAATTTATTTGCAAACAGCAACTCT----CAGTtacac-ttacacactcaaatacatacacactcagac--tccta
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               379187 101 + 123392446 TTACCCAACCTGCATATATGTGAACACCAATTTATTCACAAACATGAACTCTCCAACAGTTACACGTAATacactcagacacacacatactcagac--tccca
i micMur3.chr6             I 2 I 517
s proCoq1.NW_012149775v1     196812 101 -   1411461 TTTACCAACCTGCATATATGTAAACACCAATTTATTCACAAACATGAACTCTTCAACAGTTACAGGTCACACACTCAGACACATACACACTCAGAC--TCCCA
i proCoq1.NW_012149775v1   I 5 I 270
s otoGar3.GL873550           338381  65 +  18854210 ------------------------------------CCCAAACATAAACTCTCCAGCAGTTACACTTAAAATATTCAGATACATACATACTCAGAC--CCCCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58116556  58 -  94987271 TCACCCAACCAGCCCAT----------------------------------T----CAGTTACAC-GC-----TTCAAACAGA-ACACACTCAGACCATCCCT
i mm10.chr17               C 0 I 1
s canFam3.chr35            26355767  61 +  26524999 TTCCCC----------------------------TCCGTGATTTTGAACGCT----GAAGTAT---CCACAAACACGAGCACACACATGCT-------CCCCA
i canFam3.chr35            C 0 C 0
e dasNov3.JH567297            47694 1209 +     53444 I

a score=676277.000000
s hg38.chr6_GL000254v2_alt  1504129  66 +   4827813 TCCAAACACACCAGACAC--------------------------------------ACTTCTAAACATGCAAACATTAACACATA-TACACACTGTTTGTACAAT
s panTro5.chr6             30372951  66 + 175400573 TCCAAACACACCAGACAC--------------------------------------ACTTCTAAACATGCAAACATTAACACATA-TACACACTGTTTGTACAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30607276  66 + 173848474 TCCAAACACACCAGACAC--------------------------------------ACTTCTAAACATGCAAACATTAACACATA-TACACACTGTTTGTACAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     315013  66 +   2037526 TCCAAACACACCAGACAC--------------------------------------ACTTCTAAACATGCAAACATTAACACATA-TACACACTGTTTGTACAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74981448  66 + 122973662 CCCAAACACACCAGACAC--------------------------------------ACTTCTAAACATGCAAGCATTAACACATA-TACACACTGTTTGTACAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30859618 104 + 172585720 cacaaacacaccaggcacacaTGCAAATGTTaacatgcaaacatgttaacatgcaaacatctaaacatgcaaacGTTAACACATA-TACACACTGTTTGTATAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30149117  66 - 170955103 cacaaacacaccagacac--------------------------------------acTTCTAAACATGCAAACGTTAACACATA-TACACACTGTTTGTACAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     398326 104 +   1495729 CACAAACACACCAGGCACACATGCAAATGTTaacatgcaaacatgttaacatgcaaacatctaaacatgcaaacGTTAACACATA-TACACACTGTTTGTACAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     500127  66 -    863181 cacaaacacaccagacac--------------------------------------acTTCTAAACATGCAAACGTTAACACATA-TACACACTGTTTGTACAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29648642  66 -  71996105 cacaaacacaccagacac--------------------------------------acTTCTAAACATGCAAATGTTAACACATA-TACACACTGTTTGTACAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     381490  66 -    735854 cacaaacacaccagacac--------------------------------------acttctcaacatgcaaacgttaacacata-tacacacTGTTTGTACAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     287022  66 -   1829203 cacaaacgcaccagacac--------------------------------------acttctaaacatgcaaacgttaacacata-catacaCTGTTTGTACAAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30486852  66 + 171630274 cccaaacacaccagacac--------------------------------------acttctaaacacgcaaacattaacacatg-tacacacTGTTTGTACAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           293293  66 +    515838 cccacacacaccagacac--------------------------------------acttctaaacacgcaaacattaacacatg-tacacacTGTTTGTACAAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     922105  66 -   1771730 cacaaacacaccagacac--------------------------------------acttctaaacacgcaaacattaacacagg-tacacacTGTTTGTACAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     103165  66 -    486031 cccaaacacaccagatac--------------------------------------acTTCTAAACATGCAAACATTAACACATG-TACACACTGTTTGTACAAT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           338446  62 +  18854210 CTCAAACACACCATACAC--------------------------------------ACCTAAAAACATGAAAACATTAATGCACA-TACACACCATGT----AAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58116615  41 -  94987271 CACAAACAAGGCGTTCAC--------------------------------------TCTTGTACATAAACAAG-----------------CACTGT---------
i mm10.chr17               I 1 C 0
s canFam3.chr35            26355828  65 +  26524999 CCCCATGACACCAAATGC--------------------------------------ACGC--AACTGGGTGAACGTCCATGCACACTCCCTGCTGTTTGTGCAGT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               379288 517 + 123392446 I
e dasNov3.JH567297            47694 1209 +     53444 I
e proCoq1.NW_012149775v1     196913 270 -   1411461 I

a score=1114044.000000
s hg38.chr6_GL000254v2_alt  1504195 88 +   4827813 -CATTCCCTCAAATG----CAAACTTCAGACACAC----CTGATCCATGGCACAGACACACACACTCATG-TTTGGTCactcattcattcaacaagta
s panTro5.chr6             30373017 88 + 175400573 -CATTCCCTCAAATG----CAAACTTCAGACACAC----CTGATCCATGGCACAGACACACACACTCATG-TTTGGTCactcattcattcaacaagta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30607342 88 + 173848474 -CATTCCCTCAAATG----CAAACTTCAGACACAC----CTGATCCATGGCACAGACACACACACTCATG-TTTGGTCactcattcattcaacaagta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     315079 88 +   2037526 -CATTCCCTCAAATG----CAAACTTCAGACACAC----CTGATCCATGGCACAGACACACACACTCATG-TTTGGTCactcattcgttcaacaagta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74981514 89 + 122973662 -CATTCCCTCAAATA----CAAACTTCAGACACAC----CTGATCCAGGGCACAGACACACACACTCATGTTTTGGTCactcattcattcaacaagca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30859722 89 + 172585720 -CATTCCCTCAGATA----CAAACTTCAGACACAC----CTGATCCATGGCACAGACATACACACTCATGTTTTGGTCactcattcattcaacaagta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30149183 89 - 170955103 -CATTCCCTCAGATA----TAAACTTCAGACACAC----CTGATCCATGGCACAGACATACACACTCATGTTTTGGTCactcattcattcaacaagta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     398430 89 +   1495729 -CATTCCCTCAGATA----CAAACTTCAGACACAC----CTGATCCATGGCACAGACATACACACTCATGTTCTGGTCactcattcattcaacaagta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     500193 89 -    863181 -CATTCCCTCAGATA----CAAACTTCAGACACAC----CTGATCCATGGCACAGACATACACACTCATGTTTTGGTCactcattcattcaacaagta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29648708 89 -  71996105 -CATTCCCTCAGATA----CAAACTTCAGACACAC----CTGATCCATGGCACAGACACACACACTCATGTTTTGGTCactcattcattcaacaagta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     381556 89 -    735854 -CATTCCCTCAGATA----CAAACTTCAGACACAC----CTGATCCATGGCACAGACATACACACTCATGTTCTGGtcactcattcattcaacaagta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     287088 89 -   1829203 -CATTCCCTCAGATA----CAAACTTCAGACACAC----CTGATCCATGGCACAGACATACACACTCATGTTTTTGTCactcattcattcaacaagta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30486918 89 + 171630274 -CATTCCCTCAAATA----CAAACTTCAGACACAC----CCGATCCATGGAACAGACACACATACTTGTATTTTGGTCactcattcattcaacaagca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           293359 89 +    515838 -CATTCCCTCAAATA----CAAACTTCAGACACAC----CCGATCCACGGCACAGACACTCACACTCGTATTTTGGTCactcattcattcaacaagta
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     922171 89 -   1771730 -CATTCCCTCAAATA----CAAACTTCAGACACAT----CCGATCCATGACACAGACACTCACACTCGTATTTTGGTCactcattcattcaacaagca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     103231 87 -    486031 -CATTTCCTCAAATA----CAAACTTCAGACAC------CCGATCCATGGCACAGACACACACACCTGTATTTTGGTCactcattcattcaacaagta
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     197183 88 -   1411461 -CATTCCCTCAAATG----CAAACCTCAGACACAC----CT-ATCTAGCGCACAGACACACGCACTAATGTTTTGGTCactcattcattcaacaagta
i proCoq1.NW_012149775v1   I 270 I 99
s otoGar3.GL873550           338508 83 +  18854210 -CATTCCTCC---TT----C---CCGAAGACACAC----CTGATACAATGCACAGACACACACACTAATGTTTTGGCCACTTGTTCACTCAACTAGTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58116656 84 -  94987271 -CATTCCCTAAAATC----CAAACTTCAAGCACACTTAACTGATACAGGACACACACACACG---------TTTGATGGTTCATCCGTTCAGAAAGGA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26355893 68 +  26524999 CCACCCCCAGACATGACTCCAACATCCTCAGACCC----CTGACCCAC-----------------------TGTGGTCACTCAACCATTCCACAC---
i canFam3.chr35            C 0 C 0
e micMur3.chr6               379288 517 + 123392446 I
e dasNov3.JH567297            47694 1209 +     53444 I

a score=1144223.000000
s hg38.chr6_GL000254v2_alt  1504283 114 +   4827813 cttgttgaactcccgttatctgttggccacAAGTG---AAC-ACAGAACACACTC--AAAAAAACATAAAACATAA--ACACA--ATTTTCCATGCCTGGGTCTATTGCCTGGGTGATCATGTA
s panTro5.chr6             30373105 114 + 175400573 cttgttgaactcctgttatctgttggccacAAGTG---AAC-ACAGAACACACTC--AAAAAAACATAAAACATAA--ACACA--ATTTTCCATGCCTGGGTCTATTGCCTGGGTGATCATTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30607430 114 + 173848474 cttgttgaactcctgttatctgttggccacAAGTG---AAC-ACAGAACACACTC--AAAAAAACATAAAACATAA--ACACA--ATTTTCCATGCCTGGGTCTATTGCCTGGGTGATCATGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     315167 114 +   2037526 cttgttgaactcccgttatctgttggccacAAGTG---AAC-ACAGAACACACTC--AACAAAACATAAAACATAA--ACACA--ATTTTCCATGCCTGAGTCTACTGCCTGGGTGATCATGTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74981603 115 + 122973662 tttgttgaactcccattatctgttggccacAAGTG---aac-acagaacacactc-aaaaaaaacataaaacataa--acaca--ATTTTCCATGCCTGGGTCTATTGCCTGGGTGATCACGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30859811 114 + 172585720 tttgttgaactcccattatctgttggccacaagtg---aat-acagaACACACTC--AAAAAAACATAAAACATAA--ACATA--ATTTTCCATGCCTGGGTCTATTGCCTGGGTGATCATGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30149272 114 - 170955103 tttgttgaactcccattatctgttggccacaagtg---aat-acagaACACACTC--AAAAAAACATAAAACATAA--ACATA--ATTTTCCATGCCTGGGTCTATTGCCTGGGTGATCATGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     398519 114 +   1495729 tttgttgaactcccattatctgttggccacaagtg---aat-acagaACACACTC--AAAAAAACATAAAACATAA--ACATA--ATTTTCCATGCCTGGGTCTATTGCCTGGGTGATCATGTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     500282 115 -    863181 tttgttgaactcccattatctgttggccacaagtg---aat-acagaACACACTC-AAAAAAAACATAAAACATAA--ACATA--ATTTTCCATGCCTGGGTCTATTGCCTGGGTGATCATGTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29648797 114 -  71996105 tttgttgaactcccattatctgttggccacAAGTG---AAC-ACAGAACACACTC--AAAAAAACATAAAATATAA--ACATA--ATTTTCCATGCCTGGGTCTATTGCCTGGGTGATCATGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     381645 116 -    735854 tttgttgaactcccattatctgttggccacaagtg---aat-acagaacacactcaaaaaaaaacataaaacatAA--ACATA--ATTTTCCATGCCTGGGTCTATTGCCTGGGTGATCATGTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     287177 101 -   1829203 tttgttgaactcccattatctgttggccacAAGTG---aac-acagaacacactc--aaaaaaacataaaacataa--acata--aTTTTCCA-------------TGCCTGGGTGATCATGTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30487007 107 + 171630274 ttcattgaactcccattatctgttggccgcaagtg---aat-acGGAACACACTC--AAAA------AAAACATAA--ACACA--AATTTCCATGCCTG-GTCTACTGCCTGGGTGATCACATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           293448 107 +    515838 tttgttaaactcccattatctgttggccacAAGTG---AAC-ACAGAACACACTC--AAAA------AAAATGTAA--ACACA--AATTTCCATGCCTG-GTCTACTGCCTGGGTGATCACATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     922260 107 -   1771730 tttgttgaactcccattatctgctggCCACAAGTG---AAC-ACAGAACACACTC--AAAA------AAAACATAA--ACACA--AACTTCCATGCCTG-GTCTACTGCCTGGGTGATCACATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     103318 108 -    486031 tttgttgaactcccattatctgttggctgcaagtg---aac-acagaACATACTC-AAAAA------AAAACATAA--ACACA--AATTTCCATGCCTG-GTCTACTGCCTGGGTGATCACATA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           338591 106 +  18854210 TTTACTGAGCTCCCATTATCCTTTGGCC----------AAC-ACAAAACACA-TC--AAAA--ACATAAAACATAA--ACACAGGATGTTCCGTGCCTGAGTCTGTTGCCTGGGTAATCTTATT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58116740  86 -  94987271 ---------------TTTACTATGGTCCACAAGGA---AACAACATAGAACTCTT-------------AATTATAACTCCGTG--CTTCTCTGTGCTTCAGTATG-TGCCTGGCTGATCA----
i mm10.chr17               C 0 C 0
s canFam3.chr35            26355961  96 +  26524999 CCTGCTGAGCTTCTG-TATGTGCTGGCCATCTGTGAGCAAC-ACAGAGAGCCCTG--------------AGCATAC--ATGCG--G-TCCCCACCCCTGGGTCAGCTGCCTGAGGAG-------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               379288 517 + 123392446 I
e dasNov3.JH567297            47694 1209 +     53444 I
e proCoq1.NW_012149775v1     197271  99 -   1411461 I

a score=1156416.000000
s hg38.chr6_GL000254v2_alt  1504397 103 +   4827813 AGTAAGGAGAAAGAATTTG---GCCTCCGGGTG---------GCCTAAATAATCCACA--ACTCTG--CTGTTTCTCTTAGTCCAGTCCAG-------TCCACCCTGGGATCCCCCAGTTCCCCTT
s panTro5.chr6             30373219 103 + 175400573 AGTAAGGAGAAAGAATTTG---GCCTCCGGGTG---------GCCTAAATAATCCACA--ATTCTC--CTGTTTCTCTTAGTCCAGTCCAG-------TCCACCCTGGGATCCCCCAGTTCCCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30607544 103 + 173848474 AGTAAGGAGAAAGAATTTG---GCCTCCGGGTG---------GCCTAAATAATCCACA--ATTCTC--CTGTTTCTCTTAGTCCAGTCCAG-------TCCACCCTGGGATCCCCCAGTTCCCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     315281 103 +   2037526 AGTAAGGAGAAAGAATTTG---GCCCCCGGGTG---------GCCTAAATAATCCACA--ACTCTG--CTGTTTCTCTTAGTCCAGTCCAG-------TCCACCCTGGGATCCCCCAGTTCCCCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74981718 103 + 122973662 AGTAAGGAGAAAGAATTTG---GCCTCCGGGTG---------GCCTAAACAATCCACA--ACTCTG--CTGTTTCTCTTAGTCCAGTCCAG-------TCCACCCTGGGATCCCCCAATTCCCCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30859925 103 + 172585720 AGTCAGGAGAAAGAATTTG---GCCTCCGGGCG---------GCCTAAATAATCCACA--ACTCTG--CTGTTTCTGTTAGTGCTGTCCAG-------TCCACCCTGGGATCCCCCAGTTCACCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30149386 103 - 170955103 AGTCAGGAGAAAGAATTTG---GCCTCCGGGCG---------GCCTAAATAATCCACA--ACTCTG--CTGTTTCTGTTAGTGCTGTCCAG-------TCCACCCTGGGATCCCCCAGTTCCCCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     398633 103 +   1495729 AGTCAGGAGAAAGAATTTG---GCCTCCGGGCG---------GCCTAAATAATCCACA--ACTCTG--CTGTTTCTGTTAGTGCTGTCCAG-------TCCACCCTGGGATCCCCCAGTTCACCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     500397 103 -    863181 AGTCAGGAGAAAGAATTTG---GCCTCCGGGCG---------GCCTAAATAATCCACA--ACTCTG--CTGTTTCTGTTAGTGCTGTCCAG-------TCCACCCTGGGATCCCCCAGTTCCCCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29648911 103 -  71996105 AGTCAGGAGAAAGAATTTG---GCCTCCGGGTG---------GCCTAAATAATCCACA--ACTCTG--CTGTTTCTCTTAGTCCTGTCCAG-------TCCACCCTGGGATCTCCCAGTTCCCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     381761 103 -    735854 AGTCAGGAGAAAGAATTTG---GCCTCCAGGCG---------GCCTAAATAATCCACA--ACTCTG--CTGTTTCTCTTAGTCCTGTCCAG-------TCCACCCTGGGATCCCCCAGTTCCCCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     287278 103 -   1829203 AGTAAGGAGAAAGAATTCA---GCCTCCGGGTG---------GCCTAAATAATCCACA--ACTCTA--CTGTTTCTCTTAGTCCTGTCCAG-------TCCACCCTGGGATCCCCCAGTTCCCCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30487114  98 + 171630274 AGTAAGGAGAAAGAATTTG---GCCCCAGGGTG---------GCCTAAATAATCCACA--ACTCTG--CTGTTTCTCTTA-----GTCCAG-------TCCACCCTGGGATCCCCCAGTTCCCCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           293555  98 +    515838 AGTAAGGAGAAAGAATTTG---GCCTCAGGGCA---------GCCTAAATAATCCACA--GCTCTG--CTGTTTCTCTTA-----GTCCAG-------TCCACCCTGGGATCCCCCAGTTCCCCAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     922367  98 -   1771730 AGTAAGGAGAAAGAATTTG---GCCTCAGGGTG---------GCCTAAATAAGCCACA--ACTCTG--CTGTTTCTCTTA-----GTCCAG-------TCCACCCTGGGATCCCTCAGTTCCCCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     103426  98 -    486031 AGTAAGGAGAAAGAATTTG---GCCTCACGGTG---------GCCTAAATAATCCACA--ACTCTG--CTGTTTCTCTTA-----GTCCAG-------TCCACCCTGGGATCCCCCAGTTCCCCTT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     197370  95 -   1411461 AGTAAGGAGAAAGAACTGG---GCCTCAGGGTG---------GCCTAAATAACCCACA--GCTCAGCTCTGCTC--CTTGGTCCAGT-----------CCTGCCCTGGGATCCC---AGCCCCTC-
i proCoq1.NW_012149775v1   I 99 C 0
s otoGar3.GL873550           338697 111 +  18854210 AGCAAGGAGAAAGAACTGG---GCCTCAAACTG---------GCCTAAGTAATTCACA--ACTCTGCTCTGCTCCTCTTAGTCCAGTCCAGTCCCGCACCTGTCCTGGGATCCCTCTGTCCCCTC-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58116826 112 -  94987271 AATAAGGTAAAAAAAATTG---GAGTCCGGATGCTCCTTCCAGCCCAG--AATCCACACCACCTTT--CTACTTCCCTTAGTCCAATCCAG-------CTCTCTCAAGGGTGCCCCAGAGCCCCTT
i mm10.chr17               C 0 I 20
s canFam3.chr35            26356057  49 +  26524999 AGGCAGGAAGGAGGGCGTGCCTGCGCCCAGGGA---------CCCCCAGTGGCCCGTG--------------------------------------------------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               379288 517 + 123392446 I
e dasNov3.JH567297            47694 1209 +     53444 I

a score=7877593.000000
s hg38.chr6_GL000254v2_alt  1504500 465 +   4827813 TCCTACCCTATAGGGAGCCGCTGCATCCTCCAGGAAGCGCATGGTGTGGGTAGCGTGCTCCCCAGCCTCCCGGCACACCACGCACAACTGCATCTCATCATCCTCACAGAAGAAGTAGATCTTCTCTCCGTGCTCTTGGCAGACATCCTCCTCTCCCAAACCCAGTGTGGACACCAGCTGGAGGCGCTCAATGTTCTCCACCACGTTAGCCAGCTGCCAGTTGGGCCGGAAGCTCCCAGGACGGAAGGGTTCTTTGCAGAGTGGGCAAGTAGGGGACTCCTCCAGGTCTGGGCCTGGTATCTCACAGTAGCGGGTAAGGCAGGCCCGGCAGAAGTTGTGGCCGCAGTCGATAGTGACCGGCTCCCTCAGGGTACCCTGACAGATGGGGCAGTTGACTTCATCTGCCAGGCTGGTCACAGAGGCAGCAGAGGCCATGCTGGTCCTGCTGCTA------TGGCT-------TC-----CTCAAGG
s panTro5.chr6             30373322 465 + 175400573 TCCTACCCTATAGGGAGCCGCCGCATCCTCCAGGAAGCGCATGGTGTGGGTAGCGTGCTCCCCAGCCTCCCGGCACACCACGCACAACTGCATCTCATCATCCTCACAGAAGAAGTAGATCTTCTCTCCGTGCTCTTGGCAGACATCCTCCTCTCCCAAACCCAGTGTGGACACCAGCTGGAGGCGCTCAATGTTCTCCACCACGTTAGCCAGCTGCCAGTTGGGCCGGAAGCTCCCAGGGCGGAAGGGTTCTTTGCAGAGTGGGCAAGTAGGGGACTCCTCCAGGTCTGGGCCTGGTATCTCACAGTAGCGAGTAAGGCAGGCCCGGCAGAAGTTGTGGCCGCAGTCGATAGTGACCGGCTCCCTCAGGGTACCCTGGCAGATGGGGCAGTTGACTTCATCTGCCAGGCTGGTCACAGAGGCGGCAGAGGCCATGCTGGTACTGCTGCTA------TGGCT-------TC-----CTCTAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30607647 465 + 173848474 TCCTACCCTATAGGGAGCCGCCGCATCCTCCAGGAAGCGCATGGTGTGGGTAGCGTGCTCCCCAGCCTCCCGGCACACCACGCACAACTGCATCTCATCATCCTCACAGAAGAAGTAGATCTTCTCTCCGTGCTCTTGGCAGACATCCTCCTCTCCCAAACCCAGTGTGGACACCAGCTGGAGGCGCTCAATGTTCTCCACCACGTTAGCCAGCTGCCAGTTGGGCCGGAAGCTCCCAGGGCGGAAGGGTTCTTTGCAGAGTGGGCAAGTAGGGGACTCCTCCAGGTCTGGGCCTGGTATCTCACAGTAGCGAGTAAGGCAGGCCCGGCAGAAGTTGTGGCCGCAGTCGATAGTGACCGGCTCCCTCAGGGTACCCTGGCAGATGGGGCAGTTGACTTCATCTGCCAGGCTGGTCACAGAGGCGGCAGAGGCCATGCTGGTACTGCTGCTA------TGGCT-------TC-----CTCAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     315384 465 +   2037526 TCCTACCCTATAGGGAGCCGCCGCATCCTCCAGGAAGCGCATGGTGTGGGTAGCGTGCTCCCCAGCCTCCCGGCACACCACGCACAACTGCATCTCATCATCCTCACAGAAGAAGTAGATCTTCTCTCCGTGCTCTTGGCAGACATCCTCCTCTCCCAAACCCAGTGTGGACACCAGCTGGAGGCGCTCAATGTTCTCCACCACATTAGCCAGCTGCCAGTTGGGCCGGAAGCTCCAAGGACGGAAGGGTTCTTTGCAGAGTGGGCAAGTAGGGGACTCCTCCAGGTCTGGGCCTGGTATCTCACAGTAGCGGGTAAGGCAGGCCCGGCAGAAGTTGTGGCCGCAGTCGATAGTGACCGGCTCCCTCAGGGTACCCTGGCAGATGGGGCAGTTGACTTCATCTGCCAGGCTGGTCACAGAGGCGGCAGAGGCCATGCTGGTACTGCTGCTG------TGGCT-------TC-----CTCAAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74981821 465 + 122973662 TCCTACCCTATAGGGAGCTGCCGCGTCCTCCAGGAAGCGCATGGTGTGGGCGGCGTGCTCCCCAGCCTCCCGGCACACCACGCACAACTGCATCTCATCATCCTCACAGAAGAAGTAAATCTTCTCTCCGTGCTCTTGGCAGACATCCTCCTCTCCCAAACCCAGTGTGGACACCAGCTGGAGGCGCTCGATGTTCTCCACCACGTTAGCCAGCTGCCAGTTGGGCCGGAAGCTCCCAGGACGGAAGGGTTCTTTGCAGAGTGGGCAAGTAGGGGACTCCTCCAGGTCTGGGCCTGGGATCTCACAGTAGCGGGTAAGGCAGCCCCGGCAGAAGTTGTGGCCGCAGTCGATAGTGACCGGCTCCCTCAGGGTACCCTGGCAGATGGGGCAGTTGACTTCATCTGCCAGGCTGGTCACAGAGGCGGCAGAGGCCATGCTGGTACTGCTGCTA------TGGCT-------TC-----CTCAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30860028 456 + 172585720 TCCTACCCTATAGGGAGCCGCCGCATCCTCTAGGAAGCGCATAGTGTGGGCAGCGTGCTCTCCAGCCTCCCGGCACATCACGCACAACTGCATCTCATCATCCTCACAGAAGAAGTAGATCTTCTCTCCGTGCTCCTGGCAGGCATCCTCCTCTCCCAAACCCAGTGTGGACACCAGCTGGAGGCGCTCGATGTTCTCCACCACGTTAGCCAGCTGCCAGTTGGGCCGGAAGCTCCCAGGACGGAAGGGTTCTTTGCAGAGTGGGCAAGTAGGGGACTCCTCCAGGTCTGGGCCTGGGATCTCACAGTAGCGAGTAAGGCAGCCCCGGCAGAAGTTGTGGCCGCAGTCGATAGTGACCGGCTCCCTCAGGGTACCCTGGCAGATGGGGCAGTTGACTTCATCTGCCAGGCTGGTCACAGAGGCAGCAGAGGCCA---------TGCTGCTA------TGGCT-------TC-----CTCAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30149489 456 - 170955103 TCCTACCCTATAGGGAGCCGCCGCATCCTCTAGGAAGCGCATAGTGTGGGCAGCGTGCTCTCCAGCCTCCCGGCACACCACACACAACTGCATCTCATCATCCTCACAGAAGAAGTAGATCTTCTCTCCGTGCTCCTGGCAGGCATCCTCCTCTCCCAAACCCAGTGTGGACACCAGCTGGAGGCGCTCGATGTTCTCCACCACGTTAGCCAGCTGCCAGTTGGGCCGGAAGCTCCCAGGACGGAAGGGTTCTTTGCAGAGTGGGCAAGTAGGCGACTCCTCCAGGTCTGGGCCTGGGATCTCACAGTAGCGAGTAAGGCAGCCCCGGCAGAAGTTGTGGCCGCAGTCGATAGTGACCGGCTCCCTCAGGGTACCCTGGCAGATGGGGCAGTTGACTTCATCTGCCAGGCTGGTCACAGAGGCAGCAGAGGCCA---------TGCTGCTA------TGGCT-------TC-----CTCAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     398736 456 +   1495729 TCCTACCCTATAGGGAGCCGCCGCATCCTCTAGGAAGCGCATAGTGTGGGCAGCGTGCTCTCCAGCCTCCCGGCACATCACGCACAACTGCATCTCATCATCCTCACAGAAGAAGTAGATCTTCTCTCCGTGCTCCTGGCAGGCATCCTCCTCTCCCAAACCCAGTGTGGACACCAGCTGGAGGCGCTCGATGTTCTCCACCACGTTAGCCAGCTGCCAGTTGGGCCGGAAGCTCCCAGGACGGAAGGGTTCTTTGCAGAGTGGGCAAGTAGGGGACTCCTCCAGGTCTGGGCCTGGGATCTCACAGTAGCGAGTAAGGCAGCCCCGGCAGAAGTTGTGGCCGCAGTCGATAGTGACCGGCTCCCTCAGGGTACCCTGGCAGATGGGGCAGTTGACTTCATCTGCCAGGCTGGTCACAGAGGCAGCAGAGGCCA---------TGCTGCTA------TGGCT-------TC-----CTCAAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     500500 456 -    863181 TCCTACCCTATAGGGAGCCGCCGCATCCTCCAGGAAGCGCATGGTGTGGGCAGCGTGCTCCCCAGCCTCCCGGCACACCACGCACAACTGCATCTCATCATCCTCACAGAAGAAGTAGATCTTCTCTCCGTGCTCCTGGCAGGCATCCTCCTCTCCCAAACCCAGTGTGGACACCAGCTGGAGGCGCTCGATGTTCTCCACCACGTTAGCCAGCTGCCAGTTGGGCCGGAAGCTCCCAGGACGGAAGGGTTCTTTGCAGAGTGGGCAAGTAGGGGACTCCTCCAGGTCTGGGCCTGGGATCTCACAGTAGCGAGTAAGGCAGCCCTGGCAGAAGTTGTGGCCGCAGTCGATAGTGACCGGCTCCCTCAGGGTACCCTGGCAGATGGGGCAGTTGACTTCATCTGCCAGGCTGGTCACAGAGGCAGCAGAGGCCA---------TGCTGCTA------TGGCT-------TC-----CTCAAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29649014 456 -  71996105 TCCTACCCTATAGGGAGCCGCCGCATCCTCCAGGAAGCGCATGGTGTGGGCAGCGTGCTCTCCAGCCTCCCGGCACACCACGCACAACTGCATCTCATCATCCTCACAGAAGAAGTAGATCTTCTCTCCATGCTCCTGGCAGGCATCCTCCTCTCCCAAACCCAGTGTGGACACCAGCTGGAGGCGCTCGATGTTCTCCACCACGTTAGCCAGCTGCCAGTTGGGCCGGAAGCCCCCAGGACGGAAGGGTTCTTTGCAGAGTGGGCAAGTAGGGGACTCCTCCAGGTCTGGGCCTGGGATCTCACAGTAGCGAGTAAGGCAGCCCCGGCAGAAGTTGTGGCCGCAGTCGATAGTGACCGGCTCCCTCAGGGTACCCTGGCAGATGGGGCAGTTGACTTCATCTGCCAGGCTGGTCACAGAGGCAGCAGAGGCCA---------TGCTGCTA------TGGCT-------TC-----CTCAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     381864 456 -    735854 TCCTACCCTATAGGGAGCCGCCGCATCCTCCAGGAAGCGCATGGTGTGGGCAGCGTGCTCTCCAGCCTCCCGGCACACCACGCACAACTGCATCTCATCATCCTCACAGAAGAAGTAGATCTTCTCTCCGTGCTCCTGGCAGGCATCCTCCTCTCCCAAACCCAGTGTGGACACCAGCTGGAGGCGCTCGATGTTCTCCACCACGTTAGCCAGCTGCCAGTTGGGCCGGAAGCTCCCAGGACGGAAGGGTTCTTTGCAGAGTGGGCAAGTAGGGGACTCCTCCAGGTCTGGGCCTGGGATCTCACAGTAGCGAGTAAGGCAGCCCCGGCAGAAGTTGTGGCCGCAGTCGATAGTGACCGGCTCCCTCAGGGTACCCTGGCAGATGGGGCAGTTGACTTCATCTGCCAGGCTGGTCACAGAGGCAGCAGAGGCCA---------TGCTGCTA------TGGCT-------TC-----CTCAAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     287381 456 -   1829203 TCCTACCCTATAGGGAGCTGCCGCATCCTCCAGGAAGCGCATGGTGTGGGCGGCGTGCTCCCCAGCCTCCCGGCACACCACGCACAACTGCATCTCATCATCCTCACAGAAGAAGTAGATCTTCTCTCCGTGCTCCTGGCAGGCATCCTCCTCTCCCAAACCCTGTGTGGACACCAGCTGGAGGCGCTCGATGTTCTCCACCACGTTAGCCAGCTGCCAGTTGGGCCGGAAGCTCCCAGGACGGAAGGGTTCTTTGCAGAGTGGGCAAGTAGGGGACTCCTCTAGGTCTGGGCCTGGGATCTCACAGTAGCGAGTAAGGCAGCCCCGGCAGAAGTTGTGGCCACAGTCAATAGTGACCGGCTCCCTCAGGGTACCCTGGCAGATGGGGCAGTTGACTTCATCTGCCAGGCTGGTCACAGAGGCAGCAGAGGCCA---------TGCTGCTA------TGGCT-------TC-----CTCAAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30487212 465 + 171630274 TCCTACCCTGTACGGAGCTGCTGCATCCTCCAGGAAGCGCATGGTGTGGGTGGCATGCTCCCCAGCCTCGCGGCACACCACACACAACTGCATCTCATCATCCTCACAGAAGAAGTAGATCTTCTCCCCATGCTCCTGGCAGACGTCCTCCTCTCCCAAACCCAGTGTGGACACCAGCTGGAGGCGCTCGATGTTCTCCACCACGTTAGCCAGCTGCCAGTTGGGCCGGAAGCTCCCAGGACGGAAGGGTTTTTTGCAGAGTGGGCAAGTAGGGGACTCCTCTGGGTCTGGGCCTGGGATCTCACAGTAGCGGGTAAGGCAGCCCCGGCAGAAGTTGTGGCCACAGTCAATAGTGACCGGCTCCCTCAGGGTACCCTGGCAGATGGGGCAGTTGACTTCATCTGCCAGGCTGGTCACAGAGGCAGCAGAGGCCATGCTGGCACTGCTACTA------TGGCT-------TC-----CTCAAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           293653 465 +    515838 TCCTACCCTGTAGGGAGCCGCTGCATCCTCCAGGAAGCGCATGGTGTGGGTGGCATGCTCCCCAGCCTCTCGGCACACCACGCACAACTGCATCTCATCATCCTCGCAGAAGAAGTAGATCTTCTCTCCGTGCTCCTGGCAGACGTCCTCCTCTCCCAAACCCAGTGTGGACACCAGCTGGAGGCGCTCGATGTTCTCCACCACGTTAGCCAGCTGCCAGTTGGGCCGGAAGCTCCCAGGACGGAAGGGTTCTTTGCAGAGTGGGCAAGTAGGGGACTCCTCTGGGTCTGGGCCCGGGATCTCACAGTAGCGGGTAAGGCAGCCCCGGCAGAAGTTGTGGCCGCAGTCGATAGTGACCGGCTCCCTCAGGGTACCCTGGCAGATGGGGCAGTTAACTTCATCTGCCAGGCTGGTCACAGAGGCAGCAGAGGCCATGCTGGCACTGCTGCTA------TGGCT-------TC-----CTCCAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     922465 465 -   1771730 TCCTACCCTGTAGGGAGCAGCTGCATCCTCCAGGAAGTGCATGGTGTGGGTGGCATGCTCCCCAGCCTCTCGGCACACAACGCACAACTGCATCTCATCATCCTCACAGAAGAAGTAGATCTTCTCTCCGTGCTCCTGGCAGATGTCCTCCTCTCCCAAACCCAATGTGGACACCAGCTGGAGGCGCTCGATGTTCTCTACCACGTTAGCCAGCTGCCAGTTGGGCCGGAAGCTCCCAGGACGGAAGGGTTCTTTGCAGAGTGGGCAAGTAGGGGACTCCTCTGGATCTGGGCCTGGGATCTCACAGTAGCGGGTAAGGCAGCCCCGGCAGAAGTTGTGGCCACAGTCGATAGTGACCGGCTCCCTCAGGGTACCCTGGCAGATGGGGCAGTTGACTTCATCTGCCAGGCTGGTCACAGAGGCAGCAGAGGCCATGCTGGTACTGCTGCTA------TGGCT-------TC-----CTCAAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     103524 465 -    486031 TCCTACCCTATAGGGAGCCGCTGCATCCTCCAGGAAGCGCATGGTGTGGGTGGCATGCTCCCCAGCCTCTCGGCACACCACACACAACTGCATCTCATCATCCTCACAGAAGAAGTAGATCTTCTCTCCGTGCTCCTGGCAGACGTCCTCCTCTCCCAAACCCAGTGTGGACACCAGCTGGAGGCGCTCAATGTTCTCCACCACATTAGCCAGCTGCCAGTTGGGCCGGAAGCTCCCAGGACGGAAGGGTTCTTTGCAGAGTGGGCAAGTAGGGGACTCCTCTGGGTCTGGGCCTGGGATCTCACAGTAGCGGGTAAGGCAGCCCCTGCAGAAGTTGTGGCCACAGTCGATAGTGACCGGCTCCCTCAGGGTACCCTGGCAGATGGGGCAGTTGACTTCATCTGCCAGGCTGGTCACAGAGGCAGCAGAGGCCATGCTGGTACTGCTGCTA------TGGCT-------TC-----CTCAAAG
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               379805 462 + 123392446 TCCTACCCTGTAGGGAGCCGCCGCCGCCTCCAGGAAACGCAGGGTGTGCGCCCCGTGGGCCCCAGCCTCCCGGCACAGCACGCACAGCTGCGCCTCGTCATCCTCGCAGAAGAAGTAGACCCTCTCTCCGTGCTCCTGGCAGACGACCTCCCCTCCCAAGCCCGGCGCGGACGCCAGCTGCAGGCGCTCGACGCTGTGCACCACTCCGGCCAGCTGCCAGTTGGGCCGCAGGCTGCCGGGGCGGAAGGGGTCCTTGCAGACAGGGCAGGTCGGGGGCTGCCCCAGGTCGGGGCCCCGGGTCTCGCAGTAGCGCGTGAGGCAGCTGCGGCAGAAGTTGTGGCCACAGTCGATGGTGACCGGCGTCCTCAGGGTCCCTTGGCAGATGGGACATTGGACCTCGTCTGCCAGGCTGGTCACAGCAGCGGCTGAGGCCATGGTGC---TGCTGCTA------CGGCC-------CC-----CTCAAGG
i micMur3.chr6             I 517 I 351
s proCoq1.NW_012149775v1     197465 462 -   1411461 TCCTACCCTGTAGGGGGCCGCCGCGTCCTGCAGGAAGCGCAGGGTGTGCGCCCTGTGCGCCCCGGCCTCCCGGCACTCCACGCACAGCTGCATCTCGTCGTCCTCGCAGAAGTAGTAGATCTTCTCTCCGTGCTCCTGGCAGACGCCCTCCTCTTCTGAGCCCAGCGCGGACACCAGCTGGAGCCGCTCGATGTTCTCCACCACGTTGGCCAGCTGCCAGTTGGGCCGGAGGCTGCCGGGGTGGAAGGGGTCCTTGCAGAGAGGGCAGTTAGGGGGCTCCCCCAGGTCTGGGCCTGGGATCTCGCAGTAGCGGGTGAGGCAGCTGCGACAGAAGTTGTGGCCACAGTCGATGGTGACCGGCTCCCTCAGGGTGCCTTGGCAGATGGGGCAGGTGACCTCGTCTGCCAGGCTGGTCGCAGAGGCGGCCCAGGCCATGATGC---TGCTGCTA------CGGCC-------CC-----CTCAAGG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           338808 468 +  18854210 TCCTACCCTGTAGGGAGCCGCTGCATCCTCCAGGAAGCGCAGGGTGTGCGCCCTGTGCTCCCCGGCCTCCCGGCACAACACACACAGCTGCATCTCATCATCCTCACAGAAGAAGTAGATCTTCTCTCCATGCTCCTGGCAGATGTCGTCCTCTTCCGAGCCCAGCATGGACACCAGCTGGAGGCGCCCAATGTTCTCCACCACGTTGGCCAGCTGCCAGTTGGGCCGGAAGCTTCCAGGGCGGAAGGGCTCCTTGCAGAGAGGGCAGGTGGGGGACTCCTCCAGGTGTGGGCCTGGGATCTCACAGTACCGGGTAAGGCAGCTGCGGCAGAAGTTGTGGCCACAGTCGATGGTGACCGGCTCCCTGAGGGTGCCTTGGCAGATGGGGCAATTGACCTCTTCTGCCAGGCTGGTCACAGAGGCAGCTGAGGCCATGTTGG---TGCTGCTAGGCCTGTGGCC-------TC-----CTCAAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58116958 467 -  94987271 TCCTACCCTGTAGGGACCTGCTGCGTCCTCCAGGAAGCGCACAGTGTGAGCCCCATGCTGTCCGGTTTCGCGGCATACCACACACAACTGTGCCTCATCCTCCTCGCAAAAGAAGTAGATTTTCTCCCCGTGTTCCGGACAGGCATCCTCCACCTCCAGGCCTCGCGTGGACGCCAGCTGAAGGCGCTCGATGTTCTCCACCACATTGGCCAGCTGCCAGTTGGGCCGGAAGCTCCCTGGGCGGAAGGGCTCTTTGCAGAGCGGGCAGCTGAGGGACTCCTCTGATTCTGGACCTGGGATCTCGCAGTAGCGAGTGAGGCAGCCACGACAGAAGTTGTGGCCACAGTCAATGGTGACTGGCTCCCTCAGGGTGCCTTGGCAGATGGGGCAGTTGACCTCATCTGCCAGGCTAGTCACAGAAGGAGCTGAGGCCATGTCAA---TCCTACCA------GGCCT-------TCTGACGCTGGAAG
i mm10.chr17               I 20 C 0
s canFam3.chr35            26356106 456 +  26524999 TCCTACCCTGTAGGGCCCTGCTGCCTCGTCCAGGAAGCGCACGGTGTGGGCCTGGTGCTCCTGGGCCTCCCGGCACACCACACACAACTGCGCCTCATCGTCCTCACAGAAGAAGTAGATCTTCTCCCCATGCTCCTGGCAGACGTCCTCCTGGTCTGAGCCCAGCGTGGACACCAGCGTAAGGCGCTCAATATTCTCCACCACGCTGGCCAGCTGCCAGTTGGGCCGGAAGCCCCCCAGGCGGAAAGGCTCCTTGCATAGGGGGCAGTGGAGGGGCTCGTTGGGGTCAGGGCCCGGGATCTCACAGTAGCGGGTGAGGCAGGCCCGGCAGTAGTTGTGGCCGCAGTCAACGGTTACTGGCTCCCTTAGCGTGCCCTGGCAGATGGGGCAGCTGACTTCGTCGGCCAGGCTGCTCACAG---------ATGCCA---------TGGTACCA----CCTGGCCCGGGAGGTC-----CTCACGG
i canFam3.chr35            C 0 C 0
e dasNov3.JH567297            47694 1209 +     53444 I

a score=219788.000000
s hg38.chr6_GL000254v2_alt  1504965 16 +   4827813 CCACTCTCTCTGCTTG
s panTro5.chr6             30373787 16 + 175400573 CCACTCTCTCTGCTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30608112 16 + 173848474 CCACTCTCTCTGCTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     315849 16 +   2037526 CCACTCTCTCTGCTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74982286 16 + 122973662 CCACTCTCTCTGCTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30860484 16 + 172585720 CCACCCTCTCTGCTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30149945 16 - 170955103 CCACCCTCTCTGCTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     399192 16 +   1495729 CCACCCTCTCTGCTTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     500956 16 -    863181 CCACCCTCTCTGCTTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29649470 16 -  71996105 CCACCCTCTCTGCTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     382320 16 -    735854 CCACCCTCTCTGCTTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     287837 16 -   1829203 CCACCCTCTCTGCTTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30487677 16 + 171630274 TCACCCTCTCTGCTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           294118 16 +    515838 TCACCCTCTCTGCTTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     922930 16 -   1771730 TCACCCTCTCTGCTTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     103989 16 -    486031 TCACCCTCTCTGCTTG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     197927 16 -   1411461 GCGCCCTCTCGGCTTG
i proCoq1.NW_012149775v1   C 0 I 263
s otoGar3.GL873550           339276 16 +  18854210 TCTCCCTCTTTGCTTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58117425 14 -  94987271 TCACCGTCTCTGCT--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26356562 16 +  26524999 CCAGCGTCAGTGCGTG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               380267 351 + 123392446 I
e dasNov3.JH567297            47694 1209 +     53444 I

a score=268395.000000
s hg38.chr6_GL000254v2_alt  1504981 25 +   4827813 GCCACGGGGGAAGGGCTGGG-------------------Tcaca
s panTro5.chr6             30373803 25 + 175400573 GCCACGGGGGAAGGGCTGGG-------------------Tcaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30608128 25 + 173848474 GCCACGGGGGAAGGGCTGGG-------------------Tcaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     315865 25 +   2037526 GCCACGGGGGAAGGGCTGGG-------------------Tcaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74982302 25 + 122973662 GCCACGGGGGAAGAGCTGGG-------------------CCACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30860500 25 + 172585720 GCCACGGGGGAAGGGCTGGG-------------------CCACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30149961 25 - 170955103 GCCACGGGGGAAGGGCTGGG-------------------CCACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     399208 25 +   1495729 GCCACGGGGGAAGGGCTGGG-------------------CCACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     500972 25 -    863181 GCCACGGGGGAAGGGCTGGG-------------------CCACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29649486 25 -  71996105 GCCACGGGGGAAAGGCTGGG-------------------CCACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     382336 25 -    735854 GCCACGGGGGAAGGGCTGGG-------------------CCACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     287853 25 -   1829203 GCCACGGGGGAAGGGCTGGG-------------------CCACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30487693 25 + 171630274 GCCAAGGGGGAAGGGCTGGG-------------------CCACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           294134 25 +    515838 GCCAAGGGGGAAGGGCTGGG-------------------CCACA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     922946 25 -   1771730 GCCAAGGGGGAAGGGCTGGG-------------------CCACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     104005 25 -    486031 GCCAAGGGGAAAGGGCTGGG-------------------CCACA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           339292 44 +  18854210 GTAGAGGAAGAAGGTCTGGGAAAACAGTGAGGACACACACCACA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58117439  2 -  94987271 ------------------------------------------CA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26356578 24 +  26524999 -GCTGAGGGGCAGGGCTGGG-------------------GGAGA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               380267 351 + 123392446 I
e dasNov3.JH567297            47694 1209 +     53444 I
e proCoq1.NW_012149775v1     197943 263 -   1411461 I

a score=2079469.000000
s hg38.chr6_GL000254v2_alt  1505006 186 +   4827813 cactcacacacccacacatgcacaTGGC------TGGACAC---AGGCACATACTAAATATGCA--CCAGCACCCATATCGTC-ACA-----------CACTTGCAT----------CTCTGGCA-GCCAGGGTTC---------------------------TATTCTCCTGCCAACAGCAGAGATGGGAAATAGCA--------GAGGAGAGGAAGGAAGAGGGGCTCACAGCAT-TTCAGA-GGTGACCT---TAGA
s panTro5.chr6             30373828 186 + 175400573 cactcacacacccacacatgcacaTGGC------TGGACAC---AGGCACATACTAAATATGCA--CCAGCACCCATATCGTC-ACA-----------CACTTGCAT----------CTCTGGCA-GCCAGGGTTC---------------------------TATTCTCCTGCCAACAGCAGAGATGGGAAATAGCA--------GAGGAGAGGAAGGAAGAGGGGCTCACAGCAT-TTCAGA-GGTGACCT---TAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30608153 186 + 173848474 cactcacacacccacacatgcacaTGGC------TGGACAC---AGGCACATACTAAATATGCA--CCAGCACCCATATCGTC-ACA-----------CACTTGCAT----------CTCTGGCA-GCCAGGGTTC---------------------------TATTCTCCTGCCAACAGCAGAGATGGGAAATAGCA--------GAGGAGAGGAAGGAAGAGGGGCTCACAGCAT-TTCAGA-GGTGACCT---TAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     315890 186 +   2037526 cactcacacacccacacatgcacaTGGC------TGGACAC---AGGCACATACTAAATATGCA--CCAGCACCCATATCGTC-ACA-----------CACTTGCAT----------CTCTGGCA-GCCAGGGTTC---------------------------TATTCTCCTGCCAACAGCAGAGATGGGAAATAGCA--------GAGGAGAGGAAGGAAGAGGGGCTCACAGCAT-TTCAGA-GGTGACCT---TAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74982327 185 + 122973662 CACTCACACACCCACACGTGCACATGGC------TGGACAC---AGGCACATACTAAATATGCA--CCAGCACCCATATCGTC-ACA-----------CACTTGCAT----------CTCTGGCT-GCCAGGGTTC---------------------------TATTCTCCTGCCAACAGCAGAGATGGGAAATAGCA--------GAGGAGAGGAAGGAAG-GGGGCTCACAGCAT-TTCAGA-GGTGACTT---TAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30860525 186 + 172585720 CACTCACACACCCACATGTGCACAAGGC------TGGACAC---AGGGACATATTAAATATGCA--CCAGCACCCATATCATC-ACA-----------CACTTGCAT----------ATCTGGCA-GCCAGGATTC---------------------------TATTCTCCTGCCAACAGCAGAGATGGGAAATAACA--------GAGGAGAGGAAGGAAGAGGGGCTCACAGCAT-TTCAGA-GGTGATCT---TAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30149986 186 - 170955103 CACTCACACACCCACATGTGCACATGGC------TGGACAC---AGGTACGTATTAAATATGCA--CCAGCACCCATATCGTC-ACA-----------CACTTGCAT----------ATCTGGCA-GCCAGGATTC---------------------------TATTCTCCTGCCAACAGCAGAGATGGGAAATAGCA--------GAGGAGAGGAAGGAAGAGGGGCTCACAGCAT-TTCAGA-GGTGATCT---TAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     399233 186 +   1495729 CACTCACACACCCACATGTGCACATGGC------TGGACAC---AGGTACATATTGAATATGCA--CCAGCACCCATATCGTC-ACA-----------CACTTGCAT----------ATCTGGCA-GCCAGGATTC---------------------------TATTCTCCTGCCAACAGCAGAGATGGGAAATAGCA--------GAGGAGAGGAAGGAAGAGGGGCTCACAGCAT-TTCAGA-AGTGATCT---TAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     500997 186 -    863181 CACTCACACACCCACATGTGCACATGGC------TGGACAC---AGGTACATATTAAATATGCA--CCAGCACCCATATCGTC-ACA-----------CACTTGCAT----------ATCTGGCA-GCCAGGATTC---------------------------TATTCTCCTGCCAACAGCAGAGATGGGAAATAACA--------GAGGAGAGGAAGGAAGAGGGGCTCACAGCAT-TTCAGA-GGTGATCT---TAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29649511 186 -  71996105 CACTCACACACCCACATGTGCACATGGC------TGGACAC---AGGTACATATTAAATATGCA--CCAGCACCCGTATCGTC-ACA-----------CACTTGCAT----------ATCTGGCA-GCCAGGATTC---------------------------TATTCTCCTGCCAACAGCAGAGATGGGAAATAGCA--------GAGGAGAGGAAGGAAAAGGGGCTCACAGCAT-TTCAGA-GGTGATCT---TAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     382361 186 -    735854 CACTCACACACCCACATGTGCACATGGC------TGGACAC---AGGTACATATTAAATATGCA--CCAGCACCCATATCGTC-ACA-----------CACTTGCAT----------ATCTGGCA-GCCAGGATTC---------------------------TATTCTCCTGCCAACAGCAGAGATGGGAAATAACA--------GAGGAGAGGAAGGAAGAGGGGCTCACAGCAT-TTCAGA-GGTGATCT---TAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     287878 183 -   1829203 CACTCACACACCCACATGTGCACTTGGC------TGGACAC---AGGTACATATTAAATATGCA--CCAGCACCCGTATCGTC-ACA-----------CACTTGCAT----------ATCTGGCA-GCCAGGATTC---------------------------TATT---CTGCCAACAGCAGAGATGGGAAATAGCA--------GAGGAGAGGAAGGAAGAGGGGCTCACAGCAT-TTCAGA-GGTGATCT---TAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30487718 199 + 171630274 CACTCACACACCCACATGTGCACATGGCTGGACATGGACAC---AGGCACATATAAAATATGCA--CCAGCACCCATATCGTC-ACA-----------CACTTGCAT----------CTCTGGCG-GCCAGGGTGC---------------------------TATTCTTCTGCCAACAGCAGAGATGGAAAATAGCAGAGGAGAGGAGGAGAGGAAGGAAGAAGGCCTCACAGCAT-TTCATA-GTTGA-CT---TAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           294159 187 +    515838 CACTCACACACCCACATGGGCACATGGC------TGGACGC---AGGCACATATGAAATATGCA--CCAGCACCCATATCGTCAACA-----------CACTTGCAT----------CTCTGGTG-ACCAGGGTGT---------------------------TATTCTTCTGCCAACAGCAGAGACGGAAAATAGCA--------GAGGAGAGGAAGGAAGAGGGGCTCACAGCAT-TTCAGA-GTTGACCT---TAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     922971 186 -   1771730 CACTCACACACCCACATGTGTACATGGC------TGGACAC---AGGCACATATGAAATATACA--CCAGCACCCATATCATC-ACA-----------CACTTGCAT----------CTCTGGCG-GCCAGGATGT---------------------------TATTCTTCTGCCAACAGCAGAGATGGAAAATAGCA--------GAGGAGAGGAAGGAAGAGGTGCTCACAGCAT-TTCAGA-GTTGACCT---TAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     104030 186 -    486031 CACTCACACACCCATATATGCACATGGC------TGGACAC---AGGTACATATGAAACATGCA--CCAGCACTCATATTGTC-ACA-----------CACTTGCAT----------CTCTGGCG-GCCAGGGTGT---------------------------TATTCTTCTGCCAACAGCAGAGACAGAAAATAGCA--------GAGGAGAGGAAGGAAGAGGGGCTCACAGCAT-TTCAGA-GATGACCT---TAGA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           339336 196 +  18854210 CACTCACACACCTGTACGTGCTCATGGC------CACACAC---AGGCACATCTTAAATACACA--CCAGTACCCGCATTCTC-ATA-----------CACACGGACAAGGCACCCACTCTGGCA-GCCAGGGTTC---------------------------TGTTGTCCTGCCAATAGCACAGGTGGAGAATCACA--------GAAGAGGAGCAGGACAAGGGGCTCACAATGT-TCCAGA-GATGACCT---CAGT
i otoGar3.GL873550         C 0 I 15
s mm10.chr17               58117441 193 -  94987271 CCCTC-CACACCCACAT-----CAGGCC------TGAACAC---CAACATA-----------------GTCACCCACACTGGG-ACAAGGGA----CCCAGTTACAT----------CTCTGGCA--CCAGAGCCCCTTGTCCTGC--TCTCCCAGGAGCAGACACACTCCTGCCAACAGCATAGGTGAAGAA----A--------TAGAGGAGGAAGGCCCAGGGGCTCAAAGCA---CCATA-AGTTAACTCTCTGGA
i mm10.chr17               C 0 I 4
s canFam3.chr35            26356602 180 +  26524999 GGAT-ACACAAACATGTGTGCACACACC------CAGACACGAGGAGCACGTCTTAAATGCACATGCCTGTGGTCGTG----C-ACA-----------CACTCACAC-------TCACGCTTGCACACCAGGGTTCTTC------------------------TGTCCTCCTCCCTCAGGAACATGTGCACGCTGTCT---------------GGGAGGGAGATGGGGCCACAGCATACCCACACGATG-----------
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            48903 208 +     53444 cacgcacgctctcacgcacgcacatgat------tgctcac-------acattt---gcacact--caggcactcCTGCG--C-ACAGGGGAGGCCTCCACGTGCAT----------CTCTGGTG-GCCGCCGTCCCCTCGCCCGCGTTCTGAAAGGAGT---CACACACCTGCCACCAGTGGGGACGAGCAAGAGCA--------GAGGAGGGTGAGGACGGGGGACCC---GCAT-CCCAG--GGCGGCGT---CAGG
i dasNov3.JH567297         I 1209 C 0
e micMur3.chr6               380267 351 + 123392446 I
e proCoq1.NW_012149775v1     197943 263 -   1411461 I

a score=604341.000000
s hg38.chr6_GL000254v2_alt  1505192 48 +   4827813 -------TGACCATAACCAGG--GGCTGGCCATTCCTTTCTGCCCATCCAG--------AGACAC
s panTro5.chr6             30374014 48 + 175400573 -------TGACCATAACCAGG--GGCTGGCCATTCCTTTCTGCCCATCCAG--------AGACAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30608339 48 + 173848474 -------TGACCATAACCAGG--GGCTGGCCATTCCTTTCTGCCCATCCAG--------AGACAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     316076 48 +   2037526 -------TGACCATAACCAGG--GGCTGGCCATTTCTTTCTGCCCATCCAG--------AGACAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74982512 48 + 122973662 -------TGACCATAACCAGG--GGCTGGCCATTCCTTTCTGCCCATCCAG--------AGACAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30860711 48 + 172585720 -------TGACCATAACCAGG--GGCTGGCCATTCCTTTCCGTCCATCTAG--------ATACAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30150172 48 - 170955103 -------TGACCATAACCAGG--GGCTGGCCATTCCTTTCCGTCCATCTAA--------ATACAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     399419 48 +   1495729 -------TGACCATAACCAGG--GGCTGGCCATTCCTTTCTGTCCATCTAG--------ATACAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     501183 48 -    863181 -------TGACCATAACCAGG--GGCTGGCCATTCCTTTCTGTCCATCTAG--------ATACAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29649697 48 -  71996105 -------TGACCATAACCAGG--GGCTGGTCATTCCTTTCCGTCCATCTAG--------ATACAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     382547 48 -    735854 -------TGACCATAACCAGG--GGCTGGCCATTCCTTTCCGTCCATCTAG--------ATACAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     288061 48 -   1829203 -------TGACCATAACCAGG--GGCTGGCCATTCCTTTCTGTCCATCCAG--------ATACAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30487917 48 + 171630274 -------TGACCATAACCAGG--AGCTGACTGTTCCTTTCTGTCCATCCAG--------AGACAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           294346 48 +    515838 -------TGACCATAACCAGG--AGCTGACTCTTCCTTTCCGTCCATCCAG--------AGACAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     923157 48 -   1771730 -------TGACCATAACCAGG--AGCTGACTGTTCCTTTCTGTCCATCGAG--------AGACAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     104216 48 -    486031 -------TGACCATAATCAGG--AGCTGACTGTTCCTTTCTGTCCATCCAG--------AGACAC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     198206 48 -   1411461 -------TGACCATGACCTGG--GGCTCGCCGTTCCTTTCTGTCCATCCAG--------AGACAC
i proCoq1.NW_012149775v1   I 263 M 2075
s otoGar3.GL873550           339547 43 +  18854210 -------TGACCATGA--TGG--GACTTGATGTTCCTTTCTGTCCATCCAG--------AGA---
i otoGar3.GL873550         I 15 C 0
s mm10.chr17               58117638 48 -  94987271 -------TTCCCATGGCCTGG--AGCTCACTGCAACTTTCTGTCCACCCGA--------AGCTGC
i mm10.chr17               I 4 C 0
s canFam3.chr35            26356782 57 +  26524999 -------TGGCTACTCTCTGGGCGGCTGCGTGTGTCTTCCTGTCCATCCGTCCGTCCGCAGACA-
i canFam3.chr35            C 0 C 0
s dasNov3.JH567297            49111 56 +     53444 CCCTCTGCGCCCCCACCCCTGACGGGTCACCGTTCCTTCCCATCC-CCCAC--------AGACAC
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               380267 351 + 123392446 I

a score=604948.000000
s hg38.chr6_GL000254v2_alt  1505240 52 +   4827813 TCACAGTAGAAGGAAAGTGGTGATATGTCAGCTGTCCACTGTCAGAAGAAAT
s panTro5.chr6             30374062 52 + 175400573 TCACAGTAGAAGGAAAGTGGTGATATGTCAGCTGTCCACTGTCAAAAGAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30608387 52 + 173848474 TCACAGTAGAAGGAAAGTGGTGATATGTCAGCTGTCCACTGTCAAAAGAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     316124 52 +   2037526 TCACAGTAGAAGGAAAGTGGTGATATGTCAGCTGTCCACTGTCAAAAGAAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74982560 52 + 122973662 TCACAGTAGAAGGAAAGTGGTGATATGTCAGCTGTCCACTGTCAAAAGAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30860759 52 + 172585720 TCACAGTAGAAGGAAAGTGGTGATATGTCAGCTGTCCACTGTCAAAAGAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30150220 52 - 170955103 TCACAGTAGAAGGAAAGTGGTGATATGTCAGCTGTCCACTGTCAAAAGAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     399467 52 +   1495729 TCACAGTAGAAGGAAAGTGGTGATATGTCAGCTGTCCACTGTCAAAAGAAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     501231 52 -    863181 TCACAGTAGAAGGAAAGTGGTGATATGTCAGCTGTCCACTGTCAAAAGAAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29649745 52 -  71996105 TCACAGTAGAAGGAAAGTGGTGATATGTCAGCTGTCCACTGTCAAAAGAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     382595 52 -    735854 TCACAGTAGAAGGAAAGTGGTGATATGTCAGCTGTCCACTGTCAAAAGAAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     288109 52 -   1829203 TCACAGTAGAAGGAAAGTGGTGATATGTCAGCTGTCCACTGTCAAAAGAAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30487965 51 + 171630274 TC-CAGTAGAAGCAAAGTGGTGATATGCCAACTGCCTACTTTCAAAACAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           294394 51 +    515838 TC-CAGTAGAAGCAAAGTGGTGATATGCCAACTGCCTACTTTCAAAATAAAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     923205 51 -   1771730 TC-CAGTAGAAGCAAAGTGGTGATATGCCAACTGCCTACTTTCAAAACAAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     104264 51 -    486031 TC-CAGTAGAAGCAAAGTGGTGATATGCCAACTGCCTACTTTCAAAACAAAT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           339590 51 +  18854210 -CACAGTGGAAGGAAAGTGGTGATAGCTCCGCCATCCACTGTTGAAAGAGAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58117686 35 -  94987271 TCACAG-----------------TCTCTCAGCAGACCACTGTTGAAAGAGAT
i mm10.chr17               C 0 I 1
s canFam3.chr35            26356839 50 +  26524999 -TGCATTGGGAAGGACGGGGCAGTATCTCAGCCGCGCACCGTTG-AGGACAT
i canFam3.chr35            C 0 I 2
s dasNov3.JH567297            49167 49 +     53444 TCACAGAGGAGG--AAGTGCTGGTTTCTC-GCTGCCCACGGTGGAGGGAAAT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               380267 351 + 123392446 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M

a score=2241517.000000
s hg38.chr6_GL000254v2_alt  1505292 156 +   4827813 ----ATTCTTTTGGGGGCAAGTGGGAGACTGGGTCACAGAGTGGAGATGCCATTCCAGCCTTTCTGCCATATGGCCAGCTGTCTCCAAAGAGATTGGAGGTATCAGCCAGCCCAGGGCTTGCCCATCAGCAAGCAGGAGAGTGTGGGGGCTCAGATAAGG
s panTro5.chr6             30374114 156 + 175400573 ----ATTCTTTTGGGGGCAAGTGGGAGACTGGGTCACAGAGTGGAGATGCCACTCCAGCCTTTCTGCCATATGGCCAGCTGTCTCTAAAGAGATTGGAGGTATCAGCCAGCCCAGGGCTTGCCCATCAGCAAGCAGGAGAATGTGGGGACTCAGATAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30608439 156 + 173848474 ----ATTCTTTTGGGGGCAAGTGGGAGACTGGGTCACAGAGTGGAGATGCCACTCCAGCCTTTCTGCCACATGGCCAGCTGTCTCCAAAGAGATTGGAGGTATCAGCCAGCCCAGGGCTTGCCCATCAGCAAGCAGGAGAATGTGGGGACTCAGATAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     316176 156 +   2037526 ----ATTCTTTTGGGGGCAAGTGGGAGACTGGGTCACAGAGTGGAGATGCCACTCCAGCCTTTCTGCCATATGGCCAGCTGTCTCCAAAGAGATTGGAGGTATCAGCCAGCCCAGGGCTTGCCCATCAGCAAGCAGGAGAGTGTGGGGACTCAGATAAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74982612 156 + 122973662 ----ATTCTTTCGGGGGCAGGTGGGAGACTGGGTCGCAGAGTGGTGATGCCACTCCAGCCTTCCTACCATATGGCCAGCTGTCTCCAAAGAGATTGGAGGTATCAGCCAGCCCAGGGCTTGCCCATCAGCAAGCAGGAGAGTGTGGGGACTCAGATAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30860811 155 + 172585720 ----ATTCTTTTGGGGGCAGGTGGGAGACTGGGTCACAGAGTGGAGATGCCACTCCAGCCTTCCTGCAATATGGCCAGCTGTCTCCAAAGAGATTGGAGGTATCAGCCAGCCCAGGGCTTGCCCATCAGCAAGCAGGAGAGTGTGAGG-CTCAGATAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30150272 155 - 170955103 ----ATTCTTTTGGGGGCAGGTGGGAGACTGGGTCACAGAGTGGAGATGCCACTCCAGCCTTCCTGCAATATGGCCAGCTGTCTCCAAAGAGATTGGAGGTATCAGCCAGCCCAGGGCTTGCCCATCAGCAAGCAGGAGAGTGTGAGG-CTCAGATAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     399519 155 +   1495729 ----ATTCTTTTGGGGGCAGGTGGGAGACTGGGCCACAGAGTGGAGATGCCACTCCAGCCTTCCTGCAATATGGCCAGCTGTCTCCAAAGAGATTGGAGGTATCAGCCAGCCCAGGGCTTGCCCATCAGCAAGCAGGAGAGTGTGAGG-CTCAGATAAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     501283 155 -    863181 ----ATTCTTTTGGGGGCAGGTGGGAGACTGGGTCACAGAGTGGAGATGCCACTCCAGCCTTCCTGCAATATGGCCAGCTGTCTCCAAAGAGATTAGAGGTATCAGCCAGTCCAGGGCTTGCCCATCAGCAAGCAGGAGAGTGTGAGG-CTCAGATAAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29649797 155 -  71996105 ----ATTCTTTTGGGGGCAGGTGGGAGACTGGGTCACAGAGTGGAGATGCCACTCCAGCCTTCCTGCAATATGGCCAGCTGTCTCCAAAGAGATTAGAGGTATCAGCCAGTCCAGGGCTTGCCCATCGGCAAGCAGGAGAGTGTGAGG-CTCAGATAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     382647 155 -    735854 ----ATTCTTTTGGGGGCAGGTGGGAGACTGGGTCACAGAGTGGAGATGCCACTCCAGCCTTCCTGCAATATGGCCAGCTGTCTCCAAAGAGATTGGAGGTATCAGCCAGTCCAGGGCTTGCCCATCAGCAAGCAGGAGAGTGTGAGG-CTCAGATAAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     288161 155 -   1829203 ----ATTCTTTTGAGGGCAGGTGGGAGACTGGGTCACAGAGTGGAGATGCCACTCCAGCCTTCCTGCAATATGGCCAGCTGTCTCCAAAGAGATTGGAGGTATCAGCCAGCCCAGGGCTTCCCCATCAGCAAGCAGGAGAGTGTGAGG-CTCAGATAAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30488016 156 + 171630274 ----ATTTGTATGAGGCCAGATGGGAGACTGGGTCACAGAGTGGAGATGCCACTCCAGCCTTTCTGCAATGTGGACAGCTGTCTCCAGAGAGATTGGAGGTATCAGCCAGCCCAGGGTTTGCCCATCAGCGAGCAGGAGAGTGTGGGGACTCAGATAAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           294445 156 +    515838 ----ATTCATATGGGGCCAGGTGGGAGACTGGGTCACAGAGTGGAGATGCCACTCCAGCCTTTCTGCAATGTGGCCAGCTGTCTCCAGAGAGATTGGAGGTATCAGCCAGCCCAGGGTTTGCCCATCAACGAGCAGGAGAGTGTGGGGACTCAGATAAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     923256 156 -   1771730 ----ATTTGTATGGGGCCAGGTGGGAGACTGGGTCACAGAGTGGAGATGCCACTCCAGCCTTTCTGCAATGTGGCCAGCTGTCTCCAGAGAGATTGGAGGTATCAGCCAGCCCAGGGTTTGCCCATCAGCAAGCAGGAGAGTGTGGGGACTCAGATAAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     104315 156 -    486031 ----ATTCGTATGGGGCCAGGTGGGAGACTGGGTCACAGAGTGGAGATGCCACTCCAGCCTTTCTGCAATGTGGCCAGCTGTCTCCAGAGAGATTGGAGGTATCAGCCAGTCCAGGGTTTGCCCATCAGCGAGCATGAGAATGTGGGGACTCAGATAAGG
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               380618 139 + 123392446 ----ATTCTTTTGGGGGCAGGAGGGAGACCGAGTCACAGAGTGGAGATGCCAC-CCCGCCTCCCTGCACTATGGCCAGCTGTCTCCAGGCAGATTAGGGATATCAGCCAGCCCAGGGCT----------------GGAGAGTGTGGGGACTCAGATAAGG
i micMur3.chr6             I 351 I 1041
s otoGar3.GL873550           339641 155 +  18854210 ----GTTCTTTGGGAGACAGGAGGGAGACTGGGTAACAGAGTGGAGATGCCAC-CCAGCCTCCCTGCAGTGTGGCCAGCTGTCTCCGGGGAGATTGGAGGTATCAGCCAGCCCAGGGCTTGCCTGTCAGTGGGCAGGAGAGTGTGGGGACTCAGATAAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58117722 141 -  94987271 ----TTTTCTTCAGGGGCAGGGAGGAGCTTGACTCACAGC----TACTGCCACCCCAGC---TCTTAAACATAGCCACCTGTCTCCAGGGAGATTGGAGGTATCAGCCAGTACAAGGCT--------AGTGGCCAGGGGAGTGTGGGGACTCAGATAAGG
i mm10.chr17               I 1 C 0
s canFam3.chr35            26356891 152 +  26524999 ----ACCTTCCTCTGGATGGGAGGGACAGTGGGTTGGGGAGCAGAGCCGCCACCCTGGCCCCCCTGCA--GCTGCCGGCTG--TGCGGGCAGATTGCAGGTATCAGCAGACCCAGGGCTGGCGGGTCTGCAGGTAGGGCAGCGTGCACTCCCAGATAAGG
i canFam3.chr35            I 2 C 0
s dasNov3.JH567297            49216 140 +     53444 CGCTCTTCTCTGGGGGGCGGAGGGGA------------------CGAGGCCACCCCAGCCTCCTGGCAATGCCACCCGCTGTCTCCAGGGAGATTAGTGTATTCAGCCAGCCCAGGGCC-ACCAGCCAGCGGGCAGGGG-GCCTGGGGACCCAGAGAAGA
i dasNov3.JH567297         C 0 C 0
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M

a score=122576.000000
s hg38.chr6_GL000254v2_alt  1505448 9 +   4827813 TCCTTGTGC-
s panTro5.chr6             30374270 9 + 175400573 TCCTTGTGC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30608595 9 + 173848474 TCCTTGTGC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     316332 9 +   2037526 TCCTTGTGC-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74982768 9 + 122973662 TCCTTGTGC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30860966 9 + 172585720 TCCTTGTGC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30150427 9 - 170955103 TCCTTGTGC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     399674 9 +   1495729 TCCTTGTGC-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     501438 9 -    863181 TCCTTGTGC-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29649952 9 -  71996105 TCCTTGTGC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     382802 9 -    735854 TCCTTGTGC-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     288316 9 -   1829203 TCCTTGTGC-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30488172 9 + 171630274 TCCTTGTGC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           294601 9 +    515838 TCCTTGTGC-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     923412 9 -   1771730 TCCTTGTGC-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     104471 9 -    486031 TCCTCGTGC-
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           339796 9 +  18854210 TCCTTGTGC-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58117863 9 -  94987271 CTCTTGAGC-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26357043 9 +  26524999 TGCCTGTGC-
i canFam3.chr35            C 0 I 398
s dasNov3.JH567297            49356 4 +     53444 ------CGCT
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               380757 1041 + 123392446 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M

a score=3904246.000000
s hg38.chr6_GL000254v2_alt  1505457 412 +   4827813 CAGGGTGTACACTGCACCAGCAACTTCAATGGTGATGCCTCAACTGGCCTGCTGCA--GGCCTCAAAAGA-GGCTGGAAT----ATTCCCTATGATGGGGAGGAGAAAGAAAACTACTAACGGCCAGAATTTATTTACAATGACGGTACAACTTACATT-GATACAAGCAATTTGGCCAGAAT------------------------------TTATTTACAATGACGGTACAACTTAcattgata----caagcaatttaaaag----------tatgatc----ttatttctgtgtctgctctgcaacatcagtgctattaggatctccatttcataaatgagaaagctgaggcccagccaggtta-ttcagcttgccctag-gcacacaagtaagAAGGT-GAGTGACCATAAATAATTTGC-TGTCAGATC----TGTCTTCCGAGcaatgctattcaacataaacgcaaag
s panTro5.chr6             30374279 360 + 175400573 CAGGGTGTACACTGCACCAGCAACTTCAATGGTGATGCCTCAACTGGCCTGCTGCA--GGCCTCAAAAGA-GGCTGGAAT----ATTTCCTATGATGGGGAGGAGAAAGAAAACTagtaa-----------------------------------------------------tggccagaat------------------------------ttatttacaatgacggtacaacttacattgata----caagcaatttaaaag----------tatgatc----ttatttctgtgtctgctctgcaacatcagtgctattaggatctccatttcataaatgagaaagctgaggcccagccaggcta-ttcagcttgccctag-gcacacaagtaagAAGGT-GAGTGACCATAAATAATTTGC-TGTCAGATC----TGTCTTCCGAAcaatgctattcaacataaacgcaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30608604 360 + 173848474 CAGGGTGTACACTGCACCAGCAACTTCAATGGTGATGCCTCAACTGGCCTGCTGCA--GGCCTCAAAAGA-GGCTGGAAT----ATTTCCTATGATGGGGAGGAGAAAGAAAACTagtaa-----------------------------------------------------tggccagaat------------------------------ttatttacaatgacggtacaacttacattgata----caagcaatttaaaag----------tatgatc----ttatttctgtgtctgctctgcaacatcagtgctattaggatctccatttcataaatgagaaagctgaggcccagccaggcta-ttcagcttgccctag-gcacacaagtaagAAGGT-GAGTGACCATAAATAATTTGC-TGTCAGATC----TGTCTTCCGAAcaatgctattcaacataaacgcaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     316341 358 +   2037526 CAGGGTGTACACTGCACCAGCAACTTCAATGGTGATGCCTCAACTGGCCTGCTGCA--GGCCTC-AAAGA-GGCTGGAAT----ATTCCCTATGATGGGGAGGAGAAAGAAAACTAGTAA-----------------------------------------------------TGGCCAGAAT------------------------------TTATTTACAACGACGGTACAACTTACATTGATA----Caagcaatttaaaag----------tatgatc----ttatttctgtgtctgctctgcaacatcagtgctattaggatctccatttcataaatgagaaagctga-gcccagccaggtta-ttcagcttgcccaag-gcacacaagtaagAAGGT-GAGTGACCATAAATAATTTGC-TGTCAGATC----TGTCTTCCGAAcaatgctattcaacataaacgcaaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74982777 361 + 122973662 CAGGGTGTACACTGCACCAGCAACTTCAATGGTGATGCCTCAACTGGCCTGCCGCA--AGCCTCAAAAGA-GGCTGGAAT----ATTCCCTATGATGTGGAGGAGAAAGAAAACTAGTCA-----------------------------------------------------TGGCCAGAAT------------------------------TTATTTACAATGATGGTACAACTTAcattgata----caagcaatttaaaag----------tatgatc----ttatttctatgtctgctctgcaacatcagtgccattaggatctccatttcataaatgagaaagctgaggcccagccaggtta--tcagcttgcccaag-gcacacaagtaagAAGGC-GAGTGACCATAAATAATTTGC-TGTCAGATCT--ATGTCTGCCAAGcaatgctattcaacataaacgcaacg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30860975 362 + 172585720 CAGGGTGTACACTGCACCAGCAACTGAAATGGTGATGCCTCAACTGGCCTGCCGCA--AGCCTCAAAAGA-GGCTGGAAT----ATTCCCTATGCTGGGGAGGAGAAAGAAAACTAGCaa-----------------------------------------------------tggccagaat------------------------------ttatttatgatgacggtacatcttacattgata----taagcaatttaaaag----------tatgatc----ttatttttgtgtctgctctgcaacatcagtgctattaggatctccatttcataaatgagaaagctgaggcccagccaggttg-ttcagcttgcccaag-gcacacaagtaagAAGGT-GAGTGACCATAAATAATTTGC-TGTCAGATCT--ATGTCTTCCAAGcaatgccattcaacataaatgcaatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30150436 362 - 170955103 CAGGGTGTACACTGCACCAGCAACTTAAATGGTGATGCCTCAACTGGCCTGCCGCA--AGCCTCGAAAGA-GGCTGGAAT----ATTCCCTATGCTGGGGAGGAGAAAGAAAACTAGCaa-----------------------------------------------------tggccagaat------------------------------ttatttacgatgacggtacatcttacattgata----taagcaatttaaaag----------tatgatc----ttatttttgtgtctgctctgcaacatcagtgctattaggatctccatttcataaatgagaaagctgaggcccagccaggttg-ttcagcttgcccaag-gcacacaagtaagAAGGT-GAGTGACCATAAATAATTTGC-TGTCAGATCT--ATGTCTTCCAAGcaatgccattcaacataaatgcaatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     399683 362 +   1495729 CAGGGTGTACACTGCACCAGCAACTTAAATGGTGATGCCTCAACTGGCCTGCCGCA--AGCCTCGAAAGA-GGCTGGAAT----ATTCCCTATGCTGGGGAGGAGAAAGAAAACTAGCaa-----------------------------------------------------tggccagaat------------------------------ttatttacgatgacggtacatcttacattgata----taagcaatttaaaag----------tatgatc----ttatttttgtgtctgctctgcaacatcagtgctattaggatctccattttataaatgagaaagctgaggcccagccaggtta-ttcagcttgcccaag-gcacacaagtaagAAGGT-GAGTGACCATAAATAATGTGC-TGTCAGATCT--ATGTCTTCCAAGcaatgccattcaacataaatgcaatg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     501447 362 -    863181 CAGGGTGTACACTGCACCAGCAACTTAAATGGTGATGCCTCAACTGGCCTGCCGCA--AGCCTCAAAAGA-GGCTGGAAT----ATTCCCTATGCTGGGGAGGAGAAAGAAAACTAGCaa-----------------------------------------------------tggccagaat------------------------------ttatttatgatgacggtacatcttacattgata----taagcaatttaaaag----------tatgatc----ttatttttgtgtctgctctgcaacatcagtgctattaggatctccatttcataaatgagaaagctgaggcccagccaggttg-ttcagcttgcccaag-gcacacaagtaagAAGGT-GAGTGACCATAAATAATTTGC-TGTCAGATCT--ATGTCTTCCAAGcaatgccattcaacataaatgcaatg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29649961 362 -  71996105 CAGGGTGTGCACTGCACCAGCAACTTAAATGGTGATGCCTCAACTGGCCTGCCGCA--AGCCTCAAAAGA-GGCTGGAAT----ATTCCCTATGCTGGGGAGGAGAAAGAAAACTAGCaa-----------------------------------------------------tggccagaat------------------------------ttatttacgatgatggtacatcttacattgata----taagcaatttaaaag----------tatgatc----ttatttttgtgtctgctctgcaacatcagtgctattaggatctccatttcataaatgagaaagctgaggcccagccaggttg-ttcagcttgcccaag-gcacacaagtaagAAGGT-GAGTGACCATAAATAATTTGC-TGTCAGATCT--ATGTCTTCCAAGcaatgccattcaacataaatgcaatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     382811 362 -    735854 CAGGGTGTACACTGCACCAGCAACTTAAATGGTGATGCCTCAACTGGCCTGCCGCA--AGCCTCGAAAGA-GGCTGGAAT----ATTCCCTATGCTGGGGAGGAGAAAGAAAACTAGCaa-----------------------------------------------------tggccagaat------------------------------ttatttatgatgacggtacatcttacattgata----taagcaatttaaaag----------tatgatc----ttatttttgtgtctgctctgcaacatcagtactattaggatctccatttcataaatgagaaagctgaggcccagccaggttg-ttcagcttgcccaag-gcacacaagtaagAAGGT-GAGTGACCATAAATAATTTGC-TGTCAGATCT--ATGTCTTCCAAGcaataccattcaacataaatgcaatg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     288325 362 -   1829203 CAGGGAGTACACTGCACCAGCAACTTAAATGGTGATGCCTCAACTGGCCTGCCGCA--AGCCTCAAAAGA-GGCTGGAAT----ATTCCCTATGTTGGGGAGGAGAAAGAAAACTAGCAA-----------------------------------------------------TGGCCAGAAT------------------------------TTATTTACAATGACGGCACATCTTAcattgata----taagcaatttaaaag----------tatgatc----ttatttttgtgtctgctctgcaacatcagtgctattaggatctccattttataaatgagaaagctgaggcccagccaggtta-ttcagcttgcccaag-gcacacaggtaagaagGT-GAGTGACCATAAATAATTTGC-TGTCAGATCT--ATGTCTTCCAAGcaataccattcaacataaatgcaatg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30488181 366 + 171630274 CAGGGTGTACACTACACCAGCAACTTCAATGGTGATGCCTCAACTGGCCTGCTGCA--AGCCTCAAAGGA-GGCTGGAATATTCATTCCCTATGCTGGGGAGGGGAAAGAAAACTAGTAA-----------------------------------------------------TGGCCAGAAT------------------------------TTACTTACAACGACAGTACATCTTACATTGACA----TAAACAATGTAAAAA----------TATGATC----TGATTTCGGCATCTGctctgcaacatcagtgctattagaatctccattttataaatgagaaagctgaggtccagccaggtca-ttcagcttgcccaag-gcacacaagtaaACAGGT-AGGTGACTATAAATAATTTGC-TGTCAAATGT--ATGTCTTCCAAGcaatgctatacaacataaatacaatg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           294610 362 +    515838 CAGGGTATACACCGCACCAGCAACTTCATTGGTGATGCCTCAACTGGCCTGCTGCG--AGCCTCAAAGGA-AGCTGGAAT----ATTCCCTATGCTGGGGAGGGGAAAGAAAACTagtaa-----------------------------------------------------tggccagaat------------------------------ttacttacaatgacagtacatcttacagtgata----taagcaatttaaaaa----------tatgatc----tgatttctgcatctgctctgcaacatcagtgctattaggatctccattttataaatgagaaagctgaggtccagccagatca-ttcagcttgcccaag-gcacacaagtaaaaaggt-aagtgacCATAAATCATTTAC-TGTCAAATAT--ATGTCTTCCAAGCAAAgctattcaacataaatgcaatg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     923421 362 -   1771730 CAGGGTGTACACTGCACCAGCAACTTCAATGGTATTGCTTCAACTGGCCTGCTGCA--AGCCTCAAAGGA-GGCTGGAAT----ATTCCCTATGCTGGCGAGGGGAAAGAAAACTAGTAA-----------------------------------------------------TGGCCAGAAT------------------------------TTGcttacaatgacagtacatcttacattgata----taaacaattttaaaa----------tatgatc----tgatttctgtatctgctctgcaacatcagtgctatcaggatctccattttataaatgagaaagctgaggtccaaccaggtca-ttcagcttgtccaag-gcacacaagtaaaaaggt-aagtgacTATAAATAATTTGC-TGTCAAATGT--ATGTCTTCCAAGcaatgctattcaacataaatgcaatg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     104480 362 -    486031 CAGGGTGTACACTGCACCAGCAACTTCAATGGTGATGCCTCAACTGGCCTGCTGCA--AGCCTCAAAGGA-GGCTGAAAT----ATTCCCTATGCTGGGGAGGGGAAAGAAAACTAGTAA-----------------------------------------------------TGGCCAGAAT------------------------------TTACTTACAATGACAGTACATCTTAcattgata----taaacaatttaaaaa----------tattatc----tgatttctgcatctgctctgcaacattagtgctattaggatctccattttataaatgagaaagctgaggtccagccaggtca-ttcagcttgcccaag-gcacacgagtaaaaaggt-aagtgacTATAAATAATTTGC-TGTCAAATGT--ATGTCTTCCAAGcaatgctattcaacataaatgcaatg
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           339805 334 +  18854210 CCTGATACACATGGCATCACTAACTTCAATGGCAATCCCCCAACTGTCCTACCACA---GCTTCAAAAGA-GGTTGGAAT----ATTCCCTGTTGGGGGGAGG--------------TAA-----------------------------------------------------Cagccagcat------------------------------ttattcataatgattacatgccatacaataata----taagctatttaaatg----------tatgatc----taattt--atttccattctacaccatcaatgctagtaggctctccattttataaatgaaaaagctgaggctcagttagctta-tttatatttcc----------caagtaggaaggt-gagtggccata----acttgc-agccagatctacatgtcttctgagcaatgctgtccaatagaaatgcaatg
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58117872 425 -  94987271 TGGGGTGTGCACAGCACAAGGAACT---GTGGTGATGCCTCCATGGTCCTATAACA--GGCTTTAAAAGAGGGCCGAGAG----A---------AGGGAAAaaaaaaacaaaaacaacaa-----------caacaacaacaacaacaaaaaACGTATGAGGGAGGAAAAATAGAGCCAGCAttatttatttatttatttatttatttatttatttattACCATGACTACATATCTCCCACTGATAGACGGAAGCACTTTAAACAGtttttttttttttttt----ttaattCCACCTTGGCTCTATCACATCC-TGCTGTTTGGACCTCCATTTTGCAA--------------GCTCCTCCAGGTTCCCTCCACTCATCCAAG-GGGAACCAACA-GAGTGC-AGGTGACTGTGATCTATCTGCAAGTCAAAGCTATGTGTCTTCCAGGAGATTCAGTCTACCAGAAACCCAAAG
i mm10.chr17               C 0 I 1418
s dasNov3.JH567297            49360 326 +     53444 ----GTGCCCGCTGTGCAGGC----TCA-----GATGCCCATGCTGAGGTGCCCCACCCGCCCCCGCAGC-CCCCACACT----GTGCCC--TGCTGGGGAGGGGGGAGAAGAGCAGAAA-CGCCAGCATCTGTCTATG----------------------------------T-----GATT------------------------------CTGTACCTCAGGATAGGAGCCCT--------------GCAGCA-------------------TTTGCTCTCAGTTATTCCTCCTGCTGCTCTGCAGTGTCGGGGCACTTAGGCTCTTCGTTTTATAAATGAGG--------------------TT-TTTAGCTTCCCCAAGTTTACACAAGTGAGAGGGTGGAGGGACGGTG----ATTGGC-AGGGAGGTCTGTGGGTCTCCAGAGcagggctg-acgacagaaataggatg
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               380757 1041 + 123392446 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M
e canFam3.chr35            26357052 398 +  26524999 I

a score=1113812.000000
s hg38.chr6_GL000254v2_alt  1505869 107 +   4827813 tg-agccacatatgcaatttaaaatttcctagtggccatataaaaatagtct----aaacaggtgaaagtaa---ttttaa---tgatg-ttattttatttagtcctatatttccaaaa
s panTro5.chr6             30374639 107 + 175400573 tg-agccacatacgcaatttaaaatttcctagtggccatataaaaatagtct----aaacaggtgaaagtaa---ttttaa---tgatg-ttattttatttagtcctatatttccaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30608964 107 + 173848474 tg-agccacatacgcaatttaaaatttcctagtggccatataaaaatagtct----aaacaggtgaaagtaa---ttttaa---tgatg-ttattttatttagtcctatatttccaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     316699 107 +   2037526 tg-agccacatatgcaatttaaaatttcctagtggccatataacaatagtct----aaacaggtgaaagtaa---ttttaa---tgatg-ttattttatttagtcctatatttccaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74983138 107 + 122973662 tg-agccacatatgcaatttaaaatttcctagtagctatataaaaatagtct----aaacaggtgaaagtaa---ttttaa---tgatg-ttattttatttagtcctatatttccaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30861337 105 + 172585720 tt-agccacatatgcaatttaaaatttcctaggagccatataaaaatagtct----aaacaggtgaaagtaa---ttttaa---tgata-t--ttttatttggtcctatatttccaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30150798 105 - 170955103 tg-agccacatatgcaatttaaaatttcctaggagccatataaaaatagtct----aaacaggtgaaagtaa---ttttaa---tgata-t--ttttatttggtcctatatttccaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     400045 105 +   1495729 tg-agccacatatgcaatttaaaatttcctaggagccatataaaaatagtct----aaacaggtgaaagtaa---ttttaa---tgatt-t--ttttatttggtcctatatttccaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     501809 105 -    863181 tg-agccacatatgcaatttaaaatttcctaggagccatataaaaatagtct----aaacaggtgaaagtaa---ttttaa---tgata-t--ttttatttggtcctatatttccaaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29650323 105 -  71996105 tg-agccacatatgcaatttaaaatttcctaggagccttataaaaacagtct----aaacgggtgaaagtaa---ttttaa---tgata-t--ttttatttggtcctatatttccaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     383173 105 -    735854 tg-agccacatatgcaatttaaaatttcctaggagccatataaaaatagtct----aaacaggtgaaagtaa---ttttaa---tgata-t--ttttatttggtcctatatttccaaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     288687 106 -   1829203 tg-agccacatatgcaatttaaaatttcctagtagccatataaaaatagtct----aaacaggtgaaagtaa---ttttaa---tgatgtt--ttttatttggtcctatatttccaaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30488547 106 + 171630274 cg-agccatatatgcaatttaaaatttcctagtagccatataaaaatagtct----aaataga-gaaagtaa---ttttaa---tgatg-ttatttcatttagtcctatatttccaaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           294972 102 +    515838 tg-agccatgtatgcaatttaaaatttcctagtagccataaataaatagtct----aaac-----aaagtaa---ttttaa---tgatg-ttattttatttagtcctatatttccaaaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     923783 106 -   1771730 cg-agccacatatgcaatttaaaatttcctagtagccataaaaaaatagtct----aaacaga-gaaagtaa---ttttaa---tgatg-ttattttatttagtcctatatttccaaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     104842 106 -    486031 cg-agtcatatatgcaatttaaaatttcctagaagccatatgaaaatagtct----aaacaga-gaaagtaa---ttttaa---tgatg-ttattttatttagtcctatatttccaaaa
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           340139 110 +  18854210 tgcatttaaatttacaatttaaaatgtccttttagccatagagaaattgtacaaagaaataggtgaaattaa----tttag---taatg-cc-ttttatttagccttacatttgcaaaa
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            49686 108 +     53444 cg-agccacgtgtgagatgtaaactgttctagtagccacagtataa-aattt----aaaaagaaatgggtgaactttttaaatttaaaa-t--ttttatttaaT--TATCTTTTTAAAA
i dasNov3.JH567297         C 0 I 2744
e micMur3.chr6               380757 1041 + 123392446 I
e mm10.chr17               58118297 1418 -  94987271 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M
e canFam3.chr35            26357052 398 +  26524999 I

a score=821663.000000
s hg38.chr6_GL000254v2_alt  1505976 79 +   4827813 tattatcatttcaatatgtgatccatataaaaagtcattaataagatattttacat--ttttaaatttgt-----gaaaagccttt
s panTro5.chr6             30374746 79 + 175400573 tattatcatttcaatatgtgatccatataaaaagtcattaataagatattttacat--ttttaaatttgt-----gaaaagtcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30609071 79 + 173848474 tattatcatttcaatatgtgatccatataaaaagtcattaataagatattttacat--ttttaaatttgt-----gaaaagtcttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     316806 79 +   2037526 tattatcatttcaatatgtgatccatataaaaagtcattaataagatattttacat--ttttaaatttgt-----gaaaagtcttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74983245 79 + 122973662 tattatcatttcaatatgtgatccatataaaaagttattaataagatattttacat--tttttaatttgt-----gaaaagccttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30861442 79 + 172585720 tattatcatttcagtatgtgatccttataaaaagttattaataagatattttacat--tttttaatttgt-----gcaaagccttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30150903 79 - 170955103 tattatcatttcagtatgtgatccttataaaaagttattaataagatattttacat--tttttaatttgt-----gcaaagccttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     400150 79 +   1495729 tattatcatttcagtatgtgatccttataaaaagttattaataagatattttacat--tttttaatttgt-----gcaaagccttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     501914 79 -    863181 tattatcatttcagtatgtgatccttataaaaagttattaataagatattttacat--tttttaatttgt-----gcaaagccttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29650428 79 -  71996105 tattatcatttcagtatgtgatccttataaaaagttattaataagatattttacat--tttttaatttgt-----gcaaagccttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     383278 79 -    735854 tattatcatttcagtatgtgatccttataaaaagttattaataagatattttacat--tttttaatttgt-----gcaaagccttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     288793 79 -   1829203 tattatcatttcaatatgtgatccttataaaaagttattaataagatattttacat--tttttaatttgt-----gcaaagccttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30488653 79 + 171630274 cattatcatttcaataggtgatccacataaaaagtaattaataagatattttacat--tttttcatttgt-----gcaaagccttt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           295074 79 +    515838 cattatcgtttcaataggtgatccatataaaaacttattaataagatattttacat--tatttcatttgt-----gcaaagtcttt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     923889 76 -   1771730 cattatcatttcaatagatgatccatat---aagttattaataagatattttacat--tttttcatttgt-----gccaagccttt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     104948 79 -    486031 cattatcatttcaataggtgatccatataaaaagttattaataagatattttacat--tttttcatttgt-----gcaaagccttt
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           340249 81 +  18854210 tattatcatttcaaaatatgatccacataaaacattatta-----atattttatatcgttttttatttgtgtgtggcatggtcttt
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               380757 1041 + 123392446 I
e mm10.chr17               58118297 1418 -  94987271 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M
e canFam3.chr35            26357052 398 +  26524999 I

a score=111622.000000
s hg38.chr6_GL000254v2_alt  1506055 11 +   4827813 gaaatccggtg
s panTro5.chr6             30374825 11 + 175400573 gaaatccggtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30609150 11 + 173848474 gaaatccggtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     316885 11 +   2037526 gaaatccggtg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74983324 11 + 122973662 gaaatccagtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30861521 11 + 172585720 gaaatccagtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30150982 11 - 170955103 gaaatccagtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     400229 11 +   1495729 gaaatccagtg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     501993 11 -    863181 gaaatccagtg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29650507 11 -  71996105 gaaatccagtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     383357 11 -    735854 gaaatccagtg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     288872 11 -   1829203 gaaatccagtg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30488732 11 + 171630274 gaaatctggtg
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     923965 11 -   1771730 gaaatctggtg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     105027 11 -    486031 gaaatctggtg
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           340330 11 +  18854210 gaaatctggtg
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               380757 1041 + 123392446 I
e mm10.chr17               58118297 1418 -  94987271 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M
e canFam3.chr35            26357052 398 +  26524999 I
e saiBol1.JH378341           295153  0 +    515838 C

a score=7098.000000
s hg38.chr6_GL000254v2_alt  1506066 1 +   4827813 t
s panTro5.chr6             30374836 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30609161 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     316896 1 +   2037526 t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74983335 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30861532 1 + 172585720 t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30150993 1 - 170955103 t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     400240 1 +   1495729 t
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     502004 1 -    863181 t
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29650518 1 -  71996105 t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     383368 1 -    735854 t
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     288883 1 -   1829203 t
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           340341 1 +  18854210 t
i otoGar3.GL873550         C 0 I 104
e micMur3.chr6               380757 1041 + 123392446 I
e mm10.chr17               58118297 1418 -  94987271 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M
e canFam3.chr35            26357052 398 +  26524999 I
e saiBol1.JH378341           295153 0 +    515838 C
e aotNan1.NW_018496901v1     105038 0 -    486031 C
e cebCap1.NW_016107755v1     923976 0 -   1771730 C
e calJac3.chr4             30488743 0 + 171630274 C

a score=710950.000000
s hg38.chr6_GL000254v2_alt  1506067 129 +   4827813 gtTggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggcctaggcgggcggatcacgaggtcaggaaatctagaccatcctggttaacacggtgaaaccccgtctctactaaaaatac
s panTro5.chr6             30374837 129 + 175400573 gttggccgggcgcgatggctcacgcctgtaatcccagcactttgggaggcctaggcgggcggatcacgaggtcaggagatctagaccatcctggttaacacggtgaaaccccgtctctactaaaaatac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30609162 129 + 173848474 gttggccgggcgcgatggctcacgcctgtaatcccagcactttgggaggcctaggcgggcggatcacgaggtcaggagatctagaccatcctggttaacacggtgaaaccccgtctctactaaaaatac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     316897 128 +   2037526 gttggccaggcgcggtggctcacgcctgtaat-ccggcactttgggaggcctaggcgggcggatcacgaggtcaggagatctagaccatcctggttaacacggtgaaaccccgtctctactaaaaatag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74983336 129 + 122973662 gttggccgggtgcggtggctcatgcctgtaatcccaacacttgtggaggccaaggccggtggatcacaaggtcaggagatcgagaccatcctggttaacaggttgaaaccccgtctctactaaaaatac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30861533 129 + 172585720 gttggccaggcgccgtgactcatgcctgtaatcccagcactttgggaggccaaggtgggtggatcacaaggtcaggagatcgaggccatcctggctaacatggtgaaaccccgtctctattaaaaatac
i rheMac8.chr4             C 0 I 2
s macFas5.chr4             30150994 129 - 170955103 gttggccaggcgcggtgactcatgcctgtaatcccagcactttgggaggccaaggtgggtggatcacaaggtcaggagatcgaggccatcctggctaacatggtgaaaccccgtctctattaaaaatac
i macFas5.chr4             C 0 I 3
s macNem1.NW_012012100v1     400241 129 +   1495729 gttggccaggtgcggtgactcatgcctgtaatcccagcactttgggaggccgaggtgggtggatcacaaggttaggagatcgagaccatcctggctaacatggtgaaaccccgtctctattaaaaatac
i macNem1.NW_012012100v1   C 0 I 2
s cerAty1.NW_012002535v1     502005 129 -    863181 gttggccaggtgcggtgactcatgcctgtaatcccagcactttgggaggccgaggtgggtggatcacaaggtcaggatatcgagaccatcctggctaacatggtgaaaccccgtctctattaaaaatac
i cerAty1.NW_012002535v1   C 0 I 1679
s chlSab2.chr17            29650519 129 -  71996105 gttggccaggcgcggtgactcatgcctgtaatcccagcactttgggaggtcgaggtgggtggatcacaaggtcaggagatcgagaccttcctggctaacatggtgaaaccccgtctctattaaaaatac
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012107142v1     383369 129 -    735854 gttggccaggtgcggtgactcatgcctgtaatcctagcactttgggaggccgaggtgggtggatcacaaggtcaggatatcgagaccatcctggctaacatggtgaaaccccgtctctattaaaaatac
i manLeu1.NW_012107142v1   C 0 I 2
s colAng1.NW_012115577v1     288884 129 -   1829203 gttggtcaggcgcggtgactcatacctgtaatcccagcactttgggaggctgaggtgggtggatcaaaaggtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaatac
i colAng1.NW_012115577v1   C 0 I 2
e micMur3.chr6               380757 1041 + 123392446 I
e mm10.chr17               58118297 1418 -  94987271 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M
e canFam3.chr35            26357052 398 +  26524999 I
e saiBol1.JH378341           295153   0 +    515838 C
e otoGar3.GL873550           340342 104 +  18854210 I
e aotNan1.NW_018496901v1     105038   0 -    486031 C
e cebCap1.NW_016107755v1     923976   0 -   1771730 C
e calJac3.chr4             30488743   0 + 171630274 C

a score=641113.000000
s hg38.chr6_GL000254v2_alt  1506196 117 +   4827813 aaaaaaattagcctggcgtgctggccggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacccgggaggaggagcttgcagtgagccaagatcgcgcta
s panTro5.chr6             30374966 117 + 175400573 aaaaaaattagcctggcgtgctggccggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacccgggaggaggagcttgcagtgagccgagatcgcgcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30609291 117 + 173848474 aaaaaaattagcctggcgtgctggccggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacccgggaggaggagcttgcagtgagccgagatcgcgcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     317025 117 +   2037526 aaaaaaattagcctggcgtgctggccggcgcctgtagtcccagctactcgggaggctgaggcaggagaacggtgtgaacccgggaggaggagcttgcagtgagccgagatcgcgcta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74983465 117 + 122973662 aaaaaaattagccgggcgtggtggtgggcgcctgtactcccagctactcgggaggctgaggcaggagaatggtgtgaacccgggaggcggagcttgctgtgagcagagatcacgcta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30861664 117 + 172585720 aaaacaattagccgggtgtggcggcgggcacctgtagtcccagctactcgggaagctgaggcaggagaatggtgtgaacccgggaggcagagcttacagtgagtcgagatcgcacca
i rheMac8.chr4             I 2 C 0
s macFas5.chr4             30151126 117 - 170955103 aaaaaaattagccgggtgtggcggcgggcacctgtagtcccagctactcgggaagctgaggcaggagaatggtgtgaacccgggaggcagagcttacagtgagtcgagatcgcacca
i macFas5.chr4             I 3 C 0
s macNem1.NW_012012100v1     400372 117 +   1495729 aaaaaaattagccgggtgtggtggcgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacccgggaggcggagcttacagtgagtcgagatcgcacca
i macNem1.NW_012012100v1   I 2 C 0
s cerAty1.NW_012002535v1     503813 117 -    863181 aaaaaaattagccgggtgtggcggcgggcacctgtactcccagctactcgggaagctgaggcaggagaatggtgtgaacccgggaggcagagcttacagtgagtcgagatcgcacca
i cerAty1.NW_012002535v1   I 1679 C 0
s chlSab2.chr17            29650651 117 -  71996105 aaaaaaattagccgggtgtggcggcgggcacctgtagtcccagctactcgggaagctgaggcagaagaatggtgtgaacctgggaggcagagcttacagtgagttgagatcacacca
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012107142v1     383500 117 -    735854 aaaaaaattagccgggtgtggcggcgggcacctgtagtcccagctactcgggaagctgaggcaggagaatggtgtgaacccgggaggcagagcttacagtgagtcgagatcgcacca
i manLeu1.NW_012107142v1   I 2 C 0
s colAng1.NW_012115577v1     289015 117 -   1829203 gaaaaaactagccgggcatggtggcgggcacctgtagtcccagctactcaggaagctgaggcaggagaatggtgtgaacccaggtggcagagtttacagtaagccgagatcgcacca
i colAng1.NW_012115577v1   I 2 C 0
e micMur3.chr6               380757 1041 + 123392446 I
e mm10.chr17               58118297 1418 -  94987271 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M
e canFam3.chr35            26357052 398 +  26524999 I
e saiBol1.JH378341           295153   0 +    515838 C
e otoGar3.GL873550           340342 104 +  18854210 I
e aotNan1.NW_018496901v1     105038   0 -    486031 C
e cebCap1.NW_016107755v1     923976   0 -   1771730 C
e calJac3.chr4             30488743   0 + 171630274 C

a score=267289.000000
s hg38.chr6_GL000254v2_alt  1506313 89 +   4827813 ctgcactccatcccgggagacagagcgagactccatttcaaaaaaaaaaaaaaagaaaagaaaaaaGAGAAAAAGAAAAAGAAAAAA-AA
s panTro5.chr6             30375083 74 + 175400573 ctgcactccatcctgggagacagagcgagactccgtctcaaaaaaaaaaaaaaa---------------aaaaagaaaaagaaaaaa-aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30609408 66 + 173848474 ctgcactccatcctgggagacagagcgagactccgtctcaaaaaaa-----------------------aaaaagaaaaagaaaaaa-aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     317142 63 +   2037526 ctgcactccatcctgggagacagagcgagactccgtctcaaaa--------------------------aaaaaaaaaaaagaaaaa-aa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74983582 61 + 122973662 ctccactccatcctgggcgagagagcgagacactgtctcaa----------------------------aagaaaaaaaaagaaaaa-aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30861781 65 + 172585720 atgcactccagcctagacaacagagcgagactacatctcaaaaaa------------------------aagaaaaagaaaaaaaaa-aa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30151243 63 - 170955103 atgcactccagcctagacaacagagcgagactacatctcaaaaaa------------------------aagaaaaagaaaaaaaaa---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     400489 65 +   1495729 atgcactccagcctagacaacagagcgagactccatctcaaaaaa------------------------aagaaaaagaaaaaaaaa-aa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     503930 66 -    863181 atgcactccagcctagacaacagagcgagactccatctcaaaaaa------------------------aaaaaaagaaaaaaaaaaaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29650768 65 -  71996105 atgcactccagcctagacaacagagcgagactccatctcaaaaaa------------------------aaaaaaaaaagaaaaaga-aa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     383617 65 -    735854 atgcactccagcctagacaacagagcgagactccatctcaaaaaa------------------------aagaaaaagaaaaaaaaa-aa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     289132 65 -   1829203 atgcactccagcctagacaacagagcaagactccatctcaaaaaa------------------------aaagaaaaagaaaaagaa-aa
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           340446 62 +  18854210 ctaCACTCCAAGGGGGACATGAGGGTGGAAAGGGAAAGTGAGTAA------------------------AAAGGGAACAACAAGAG----
i otoGar3.GL873550         I 104 C 0
e micMur3.chr6               380757 1041 + 123392446 I
e mm10.chr17               58118297 1418 -  94987271 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M
e canFam3.chr35            26357052 398 +  26524999 I
e saiBol1.JH378341           295153  0 +    515838 C
e aotNan1.NW_018496901v1     105038  0 -    486031 C
e cebCap1.NW_016107755v1     923976  0 -   1771730 C
e calJac3.chr4             30488743  0 + 171630274 C

a score=-10107.000000
s hg38.chr6_GL000254v2_alt  1506402  3 +   4827813 --g--------aa
s panTro5.chr6             30375157  3 + 175400573 --g--------aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30609474  3 + 173848474 --g--------aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     317205  3 +   2037526 --g--------aa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74983643  3 + 122973662 --g--------aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30861846  3 + 172585720 --g--------aa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30151306  2 - 170955103 -----------aa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     400554  3 +   1495729 --g--------aa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     503996  3 -    863181 --g--------aa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29650833 11 -  71996105 --aagaaaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     383682  5 -    735854 --gag------aa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     289197  6 -   1829203 --aaat-----aa
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           295153  3 +    515838 --g--------aa
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           340508  3 +  18854210 GGG----------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               380757 1041 + 123392446 I
e mm10.chr17               58118297 1418 -  94987271 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M
e canFam3.chr35            26357052 398 +  26524999 I
e aotNan1.NW_018496901v1     105038  0 -    486031 C
e cebCap1.NW_016107755v1     923976  0 -   1771730 C
e calJac3.chr4             30488743  0 + 171630274 C

a score=49373.000000
s hg38.chr6_GL000254v2_alt  1506405 8 +   4827813 atccggta
s panTro5.chr6             30375160 8 + 175400573 atccggta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30609477 8 + 173848474 atccggta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     317208 8 +   2037526 atccggta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74983646 8 + 122973662 atctggtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30861849 8 + 172585720 atccggtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30151308 8 - 170955103 atccggtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     400557 8 +   1495729 atccggtg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     503999 8 -    863181 atccggtg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29650844 8 -  71996105 atcccgtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     383687 8 -    735854 atccggtg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     289203 8 -   1829203 atccggtg
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           295156 8 +    515838 atctggta
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6               380757 1041 + 123392446 I
e mm10.chr17               58118297 1418 -  94987271 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M
e canFam3.chr35            26357052 398 +  26524999 I
e otoGar3.GL873550           340511 0 +  18854210 C
e aotNan1.NW_018496901v1     105038 0 -    486031 C
e cebCap1.NW_016107755v1     923976 0 -   1771730 C
e calJac3.chr4             30488743 0 + 171630274 C

a score=910696.000000
s hg38.chr6_GL000254v2_alt  1506413 100 +   4827813 tgtattttacatatacagcatgccgccattcagaccggccacatttcagtgctcagtagacacatgtggctggtggctcct----gtattggacaAACTAGTTC
s panTro5.chr6             30375168 100 + 175400573 tgtattttacatatacagcatgccgccattcagaccggccacatttcagtgctcagtagacacatgtggctggtggctcct----gtattggacaAACTAGTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30609485 100 + 173848474 tgtattttacatatacagcatgccgccattcagaccggccacatttcagtgctcagtagacacatgtggctggtggctcct----gtattggacaAACTAGTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     317216 100 +   2037526 tgtattttacatatacagcatgccgccattcagaccggccacatttcagtgctcagtagacacatgtggctggtggctcct----gtattggacaAACTAGTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74983654 100 + 122973662 tgtattttacatatacagcatgccgccattcagaccagccacatttcagtgctcagtagacacatgtggctggtggctcct----gtattggacaAACTAGCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30861857 100 + 172585720 tgtattttatatatacagcacgctgccattcagaccggccacatttcagtgctcagtagacacatgtgactggtggcttcg----gtattggacaAATTGGCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30151316 100 - 170955103 tgtattttatatatacagcacgccgccattcagaccggccacatttcagtgctcagtagacacatgtgactggtggcttct----gtattggacaAATTGGCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     400565 100 +   1495729 tgtattttatatatacagcacgccgccattcagaccggccacatttcagtgctcagtagacacatgtgactggtggcttct----gtattggacaAATTGGCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     504007 100 -    863181 tgtattttatatatacagcacgccgccattcagaccggccacatttcagtgctcagtagacacatgtgactggtggcttct----gtattggacaAATTGGCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29650852  98 -  71996105 catattttatatatacagcacgtcggcattcagactggccacatttcagtgctcagtagacacatgtgactggtggctcct----gta--GCACAAATTGGCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     383695 100 -    735854 tgtattttatatatacagcacgccgccattcagaccggccacatttcagtgctcagtagacacatgtgactggtggcttct----gtattggacaAATTGGCTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     289211 100 -   1829203 tgtgttttatacatgcagcacgccgccattcagaccggccacatttcagtgctcagtagacacatgtgactggtggctcct----gtattggacaAATTGGCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30488743 101 + 171630274 tgtattttacacatacagcacgcctccattcagactggccacatttcagtgctcagtagacatgcgtggctggggactCATTCATGTATT--ACAGTCTAGGT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           295164 103 +    515838 tgtattttacacatacagcagacctccattcagactggacacatttcagtgctcagtagacacgtgtggctggggactcattcacgtattggacagTCTAGCT-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     923976  99 -   1771730 tgtattttacacacacagcatgcctccattcagactggccacatttcagtgctcggtagacacgtgtggctgggggctcat----gtattggacagTCTAACT-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     105038 103 -    486031 tgtattttacacatacagcatgcctccattcagactggccacatttcagtgctcagtagacacgtgtggctgggggctcattcatgtactggacagTCTAGCT-
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               380757 1041 + 123392446 I
e mm10.chr17               58118297 1418 -  94987271 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M
e canFam3.chr35            26357052 398 +  26524999 I
e otoGar3.GL873550           340511   0 +  18854210 C

a score=868486.000000
s hg38.chr6_GL000254v2_alt  1506513 96 +   4827813 CTGGGCTG--CACTCGTGGCAGGAAGAGCAGAGATTGGATGGGAAGGGGAGGTAATAAAGTGATTAGAGTAAAAAGGGAGCAACCACAAGGGGCTAGG
s panTro5.chr6             30375268 96 + 175400573 CTGGGCTG--CACTCGTGGCAGGAAGAGCAGAGATTGGATGGGAAGGGGAGGTAATAAAGTGATTAGAGTAAAAAGGGAGCAACCACAAGGGGCTAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30609585 96 + 173848474 CTGGGCTG--CACTCGTGGCAGGAAGAGCAGAGATTGGATGGGAAGGGGAGGTAATAAAGTGATTAGAGTAAAAAGGGAGCAACCACAAGGGGCTAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     317316 96 +   2037526 CTGGGCTG--CACTCGTGGCAGGAAGAGCAGAGATTGGATGGGAAGGGGAGGTAATAAAGTGATTAGAGTAAAAAGGGAGCAACCACAAGGGGCTAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74983754 96 + 122973662 CTGGGCTG--CACTCATGGCAGGAAGAGCAGAGATTGGATGGGAAGGGGAGGTAATAAAGTGATTAGAGTAAAAAGGGAGCAACCACAAGGGGCTAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30861957 96 + 172585720 CTGGGCTG--CACTGGTGGCAGGAAGAGCAGAGATCGGGTGGGAAGGGGAGGAGATGAAGTGATTAGAGTAAAAAGGGAGCAACCACAAGGGGCTAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30151416 96 - 170955103 CTGGGCTG--CACTGGTTGCAGGAAGAGCAGAGATCGGGTGGGAAGGGGAGGAGATGAAGTGATTAGAGTAAAAAGGGAGCAACCACAAGGGGCTAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     400665 96 +   1495729 CTGGGCTG--CACTCGTGGCAGGAAGAGCAGAGATCGGGTGGGAAGGGGAGGAGATGAAGTGATTAGAGTAAAAAGGGAGCAACCACAAGGGGCTAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     504107 96 -    863181 CTGGGCTA--CACTGGTGGCAGGAAGAGCAGAGATCGGGTGGGAAGGGGAGGAGATGAAGTGCTTAGAGTAAAAAGGGAGCAACCACAAGGGGCTAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29650950 96 -  71996105 CTGGGCTG--CACTGGTGGCAGGAAGAGTAGAGATCGGGTGGGAAGGGGAGGAGATACAGTGATTAGCGTAAAAAGGGAGCAACCACAAGGGTCTACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     383795 96 -    735854 CTGGGCTA--CACTGGTGGCAGGAAGAGCAGAGATCGGGTGGGAAGGGGAGGAGATGAAGTGCTTAGAGTAAAAAGGGAGCAACCACAAGGGGCTAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     289311 96 -   1829203 CTGGGCTG--CACTCGTGGCAGGAAGCGCAGAGATCGGGTGGGAAAGGGAGGAGATAAAGTGATTAGAGTAAAAAGGGAGCAACCACAAGGGTCTAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30488844 95 + 171630274 CTGAGCTG--AACTTGCGGCAGGAAGAGCAAAGATTGGGTGGGAAGGGGCGATGATAAAGTTATTAGCGAAAAAAG-TAACAACCACAGGGGGCTGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           295267 94 +    515838 CTGGGCTG--CACCCGTGGCAGGAAGAGCAAAGATAGGGTGGGAAGGGGAGGTGATAAAGTTATTAGCAAAAAAAG--AACAACCACAGTGGGCTAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     924075 94 -   1771730 CTGGGCTG--CACTCCTGGCAGGAAGAGCAAAGAGTGGGTGGGAAGGGGAGGTGATAAAGTTATTAGTGAAAAAAG--AACAACCACAGGGGGCTGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     105141 94 -    486031 CTGAGCTG--CACTTGTGGCAGGAAGAGCAAAGATCGGGTGGGAAGGGGAGGTGATAAAGTTATTAGTGAAAAAAG--AACAACCACAGGGGGCTGGG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           340511 40 +  18854210 TTGGGTTGATCACTC-----------------------------AGGCGAGG------------------ACAGAGGGA-----------GGCCTGGT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               380757 1041 + 123392446 I
e mm10.chr17               58118297 1418 -  94987271 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M
e canFam3.chr35            26357052 398 +  26524999 I

a score=3237730.000000
s hg38.chr6_GL000254v2_alt  1506609 323 +   4827813 CTGATCACCCAGTGGGAGAATGGGGGAAGGCCTGGTTTTATCCACAGATGT--GTGCATGGGTGAAGGACCGTGGCTGCAGATCTTGGTCTTGGCAT-GAG----GTgt-g--ggaggagcgtagggctttaagccagga---gactggga-----------tcgtcctt-aacgtgatactttctagctttgtgacctttggaaagtcactttacatttggaaagtcagtttacatttctttctctgt-aaaatgaaggtaataatgtttg-cctagagggttatta--aaattgaatgtagtaatataaaaatactaaacCCTAGATAAATGTGGTTG--AAACTGATTATC--------
s panTro5.chr6             30375364 323 + 175400573 CTGATCACCCAGTGGGAGAATGGGGGAAGGCCCGGTTTTATCCACAGATGT--GTGCATGGGTGAAGGACCGTGGCTGCAGATCTTGGTCTTGgcgt-gag----gtgt-g--ggaggagcgtagggctttaagccagga---gactggga-----------tcgtccct-gacgtgatactttctagctttgtgacctttggaaagtcactttacatttggaaagtcagtttacatttctttctctgt-aaaaggaaggtaataatgtttg-cctagagggttatta--aaattgaatgtagtaatataAAAATACTAAACCCTAGATAAATGTGGTTG--AAACTGATTATC--------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30609681 323 + 173848474 CTGATCACCCAGTGGGAGAATGGGGGAAGGCCCGGTTTTATCCACAGATGT--GTGCATGGGTGAAGGACCGTGGCTGCAGATCTTGGTCTTGgcgt-gag----gtgt-g--ggaggagcgtagggctttaagccagga---gactggga-----------tcgtccct-gacgtgatactttctagctttgtaacctttggaaagtcactttacatttggaaagtcagtttacatttctttctctgt-aaaaggaaggtaataatgtttg-cctagagggttatta--aaattgaatgtagtaatataAAAATACTAAACCCTAGATAAATGTGGTTG--AAACTGATTATC--------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     317412 323 +   2037526 CTGATCACCCAGTGGGAGAATGGGGGAAGGCCTGGTTTTATCCACAGATGT--GTGCATGGGTGAAGGACCGTGGCTGCAGATCTTGGTCTTGgcgt-gag----gtgt-g--ggaggagcgtagggctttaagccagga---gactggga-----------tcgtccct-gacgtgatactttctagctttgtgacctttggaaagtcactttacatttggaaagtcagtttacatttctttctctgt-aaaaggaaggtaataatgtttg-cctagagggttatta--aaattgaatgtagtaatataAAAATACTAAACCCTAGATAAATGTGGTTG--AAACTGATCATC--------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74983850 323 + 122973662 CTGATCACCCAGTGGGAGAATGGGGGAAGGCCTGGTTTTATCCACAGATGT--GTGCATGGGTAAAGGACGGTGGCTGCTGATCTTGGTCTTGgcgt-ggg----gtgt-g--ggaggagcgtagggctttaagccagga---gactggga-----------tcgtccct-gacatgatactttctagctctgtgacctttggaaagtcactttacctttggaaagtcagtttacatttctttctctgt-aaaatgaaggtaataatgtttg-cctagagggttatta--aaattgaatgtagtagtataaaaatactaaacCCTAGATACATGTGGTTG--AAACTGTTTATC--------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30862053 326 + 172585720 CTGATCACCCAGTGGGAGAATGGGGGAAGGCCTGGTTTTATCCACAGATGTGAGCGCGTGGATGAAAGACCGTGGCAGCTGATCTTGGTCCTGgcgt-ggg----gtgt-g--ggaggagcatagggctttactccagga---gactggga-----------tcttccct-gacatgatactttctagccccgtgacctctggaaagtcactttacatttggaaagtcagtttacatttctttctctgtaaaaatgaaggtaataatgtttg-tctagagggttatta--aaattgaatgtagtaatataAAAATACTAAACCCTAGATAAATGTGGCTG--AAACTGTTTATC--------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30151512 326 - 170955103 CTGATCACCCAGTGGGAGAATGGGGGAAGGCCTGGTTTTATCCACAGATGTGAGTACGTGGATGAAGGACCGTGGCAACTGATCTTGGTCCTGgcgt-cgg----ctgt-g--ggaggagtatagggctttactccagga---gactggga-----------tcatccct-gacatgatactttctagccctgtgacctctggaaagtcactttacatttggaaagtcagtttacatttctttctctgtaaaaatgaaggtaataaagtttg-cctagagggttatta--aaattgaatgtagtaatataAAAATACTAAACCCTAGATAAATGTGGCTG--AAACTGTTTATC--------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     400761 326 +   1495729 CTGATCACCCAGTGGGAGAATGGGGGAAGGCCTGGTTTTATCCACAGATGTGAGTATGTGGATGAAGGAACGTGGCAGCTGATCTTGGTCCTGGCGT-CGG----GTgt-g--ggaggagcatagggctttactccagga---gactggga-----------tcgtccct-gacatgatactttctagccctgtgacctctggaaagtcactttacatttggaaagtcagtttacatttctttctctgtaaaaatgaaggtaataatgtttg-tctagaggattatta--aaattgaatgtagtaatataaaaatactaaacCCTAGATAAATGTGGCTG--AAACTGTTTATC--------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     504203 326 -    863181 CTGATCACCCAGTGGGAGAATGGGGGAAGGTCTGGTTTTATCCACAGATGTGAGCGCGTGGATGAAAGACCGTGGCAGCTGATCTTGGTCCTGGCGT-CGG----GTgt-g--ggaggagcgtagggctttactccagga---gactggga-----------tcgtccct-gacatgatactttctagccccggggcctccggaaagtcactttacatttggaaagtcagtttacatttctttctctgtaaaaatgaaggtaataatgtttg-tctagagggttatta--aaattgaatgtagtaatataAAAATACTAAACCCTAGATAAATGTGGCTG--AAACTGTTTATC--------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29651046 326 -  71996105 CTGATCACCCAGTGGGAGAATGGGGGAAGGCCTGGTTTTATCCACAGATGTGAGCGTGTGGATGAAGGACCGTGGCAGCTGATCTTGGTCCCGGCGT-CAG----GTgt-g--ggaggagtgtagggctttactccagga---gactggga-----------tcatccct-gacgtgatactttctagccctgtgacctctggaaagtcactttacaattggaaagtcagtttacatttctttctctgtaaaaatgaaggtaataatgtttg-cctagagggttatta--aaattgaatgtagtaatataAAAATACTAAACCCTAGATAAATGTGGCTG--AAACTGTTTATC--------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     383891 326 -    735854 CTGATCACCCAGTGGGAGAATGGGGGAAGGTCTGGTTTTATCCACAGATGTGAGCGCGTGGATGAAAGACCGTGGCAGCTGATCTTGGTCCTGgcgt-ggg----gtgt-g--ggaggagcgtagggctttactccagga---gactggga-----------tcgtccct-gacatgatactttctagccccggggcctccggaaagtcactttacatttggaaagtcagtttacatttctttctctgtaaaaatgaaggtaataatgtttg-tctagagggttatta--aaattgaatgtagtaatataaaaatactaaacCCTAGATAAATGTGGCTG--AAACTGTTTATC--------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     289407 310 -   1829203 CTGATCAC-------------GTGGGAAGGCCTGGTTTTATC--CAGATGTGAGTGCGTGGATGAAGGACTGTGGCAGCTGATCTTGGTCCTGgcgt-ggg----gtgt-g--ggaggagcatagggctttactccagga---gactgggt-----------tcgtccct-gacatgatactttctagccctgtgacctctggaaagtcactttacatttggaaagtcggtttacatttctttctctgt-aaaatgaaggtaataatgtttg-cctagagggttatta--aaattgaatgtagtaatataaaagtactAAACCCTAGATAAATGTGGCTG--AAACTGTTTATC--------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30488939 317 + 171630274 CTGATCACCCAGTGGGAGAATAGGGGAAGGTCTGGTTTTATTCACAGATGTGAGTAAGTGGATGAACA-CCGTGGCTGCTGATCTTGATCTTGgtgtgggg----gtgtgg--ggaagagcatagggctttaagccagga---gactggga-----------ttgaccct-gatatgagactttccagccctatgaccttcagaaagttactttacctt-------tcagtttacatttctttctctgt-aaaatgaaagtaataatgtcta-catagagggttgtta--aaattgaatgtaataatataaaagtacCAAAACTTAGATAAA-GTGGTTG--AAG-GGTTTATC--------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           295361 318 +    515838 CTGATCACCCAGTGGGAGAATAGGGGAAGGCCTACTTTTATTCACAGATGTGAGTGAGTGGATGAAAACCCGTACCTGCTGATCTTGATCTTGgcgt-ggg----gtgt-g--gaaagagcatagggctttaagccagga---gattggga-----------tcgtccct-gacatgagactttccagctctgtgacctttggaaagttactttacctt-------tcagcttacatttctttctctgt-aaaatgaaagtaataatgtctg-cgtagagggttgttc--aaattgaatgtaataatataaaagtacCAAACCTTAAATAAATGTGGTTG--AAACGGTTTATC--------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     924169 318 -   1771730 CTGATCACCCAGTGGGAGAATAGGGGACGGCCTGGTTTTATTCACAGACGTGAGTGAGCGGATGAAAAACCGTGGCTGCTGATCTTGATCTTGgcgt-ggg----gtgt-g--ggaagagcatagggctttaagccagga---ggctggga-----------tcgtccct-gacacgagactttccagccctgtgaccttcggaaagttactttacctt-------tcagtttacatttctttctctgt-aaaatgaaagtaataatgtctg-tgtagagggttgtta--aaattgaatgtaataatataaaagtacCAAACCTTAGATAAATGTGGTTG--AAATCGTTTATC--------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     105235 317 -    486031 CTGATCACCCAGTGGGAGAATAGGGGAAGGCCTGGTTTTATGCACAGATGTGGGTGAGTGGATGAAAAACCGTGG-TGCTGATCTTGATCTTGgcgt-ggg----gtgt-g--ggaagagcatagggctttaagccagga---gactggga-----------tcgtccct-gacatgagactttccagccctgtgaccttcagaaagttactttacctt-------tcagtttacatttctttctctgt-aaaatgaaagtaataatgtctg-cgtagagggttgtta--aaattgaatgtgataatataGAAGTACCAAACCTCAGATAAATGTGGTTG--AAACGGTTTATC--------
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           340551 283 +  18854210 TTTATCA------------------------------------GCAGATGCAGGTGAGTGGATGAAGAACTGGAGTGCTGGATCTCAGTCCTGCTAT-GGC----TTgt-gcagaaagagcacagggcgtaaagccagga---gcctggga-----------tcatccccagttatgaggctttctagctctgtgacctttggaaagtcattttacctt-------tcactttatagttccttctctgt-gaaatgaaggcaatgatacctt-cctagacggtagttg--gaatgagatataataatatgaaaacactaaacCCTAGATAAATATGATTG--ACACT--TTATC--------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26357450 322 +  26524999 CTGATCGCTGGGTGCAGGACTGGGTG-----TTTGGCTTGTCCACAGATGCAGGGACAGGAAT--AGGACTGTGGCTGTGGGGCCTTCCGTGGGCAT-GGGGTCAGTgt-g--gggagagcacagggcatggggacagcatagggctgggaagctcagagactcctctcc-accctagagctagctagcctcac--tctctgg------------------------cccttcacatgccttcatctgg-aaaatgaacatcgtcctaactgttctaaagggttcttgccagattggctgtaataatatgaaaatactaagTTCTC-CTAAATATGCTTATTCTACCCTTGACCTTTTGGGC
i canFam3.chr35            I 398 C 0
e micMur3.chr6               380757 1041 + 123392446 I
e mm10.chr17               58118297 1418 -  94987271 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M

a score=804918.000000
s hg38.chr6_GL000254v2_alt  1506932 65 +   4827813 T----GACTAATCGTTTTCTAATGTGTATCAACATAAATCATTTGCATTATGGTTTCTTGCCTTCTCCC
s panTro5.chr6             30375687 69 + 175400573 TTTCTGACTAATCGTTTTCTAATGTGTATCAACATAAATCATTTGCATTATGGTTTCTTGCCTTCTCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30610004 69 + 173848474 TTTCTGACTAATCGTTTTCTAATGTGTATCAACATAAATCATTTGCATTATGGTTTCTTGCCTTCTCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     317735 69 +   2037526 TTTCTGACTAATCGTTTTCTAATGTGTATCAACATAAATCATTTGCATTATGGTTTCTTGCCTTCTCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74984173 69 + 122973662 TTTCTGACTAATCGTTTTCTAATGTGTATCAACATAAGTCATTCGCATTATGGTTTCTTGCCTTCTCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30862379 69 + 172585720 TTTTTGACTAATCATTTTCTAACGTGTATCAACATAAATCATTTGCATTACGGTTTCTTGCCTTCTCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30151838 69 - 170955103 TTTTTGACTAATCATTTTCTAACGTGTATCAACATAAATCATTTGCATTACGGTTTCTTGCCTTCTCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     401087 69 +   1495729 TTTTTGACTAATCATTTTCTAACGTGTATCAACATAAATCATTTGCATTACGGTTTCTTGCCTTCTCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     504529 69 -    863181 TTTTTGACTAATCATTTTCTAACGTGTATCAACATAAATCATTTGCATTACGGTTTCTTGCCTTCTCCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29651372 69 -  71996105 TTTTTGACTAATCATTTTCTAACGTGTATCAACATAAATCGTTTGCATTACGGTTTCTTGCCTTCCCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     384217 69 -    735854 TTTTTGACTAATCATTTTCTAACGTGTATCAACATAAATCATTTGCATTACGGTTTCTTGCCTTCTCCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     289717 69 -   1829203 TTTTTGACTAATCATTTTCTAACGTATATCAACATAAATCATTAGCATTACGGTTTCTTGTCTTCTCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30489256 61 + 171630274 T--------AATTGTTTTCTAACGTGTATCAACATAAATTGTTTGCATTATGGTTTCTTGCCTTCTCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           295679 60 +    515838 TTTT----GAATTGTTTTCTAATGTGTGTCAACATAAATTGTTTGCATTATGG-----TGCCTTCTCCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     924487 65 -   1771730 TTTC----TAATTGTTTTCTAATGTGTATCAACATAAATTGTTTGCATTATGGTTTCTTGCCTTCTCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     105552 65 -    486031 TTTT----TAATTGTTTTCTAATGTGTATCAACATAAATTGTTTGCATTATGGTTTCTTGTCTTCTCCC
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               381798 65 + 123392446 ----TGACTAATTGTTTTCTAACATTTATCAACATAAATCATTTGCATTATGGTTTCTTGCCTTCTCCC
i micMur3.chr6             I 1041 I 1241
s otoGar3.GL873550           340834 64 +  18854210 ----TTTCTGGTTGTTTCCTAACATTCAGCAACATAAATCATTTA-ATTTTGATTTCTTGCCTTCTCCC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26357772 59 +  26524999 ----TGA------GTTTTCTACATTTCATTAACAGAAATCATTTGTATTATAATTTCTTGCCTTCTCCC
i canFam3.chr35            C 0 C 0
e mm10.chr17               58118297 1418 -  94987271 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M

a score=2270768.000000
s hg38.chr6_GL000254v2_alt  1506997 268 +   4827813 CGCTACAGT-AAa-----aataaataaataaataaataaataaataaa--------taaataaataaaATAGTCCAGTGTTACCCGAACCCCAAAGGGGACTGTTGTGCCAGGTGGTGGGGGATTTGGGACCGTA-GGAGGGGCCACCATGGGCAGATGTggtgagggaggaaaggagagcagaagaggggaCCCGATGAGCAATCCTTACAC-CCTACCTGCAGTGTCGAAACAGCGTC-CCGCCCACACACTTCCGGCAGAATCTCCCGAAGTCCACACCTCT
s panTro5.chr6             30375756 253 + 175400573 CGCTACAGT-AAa-----aataaataaataaataaataaataaataaa--------------------ATAGTCCAGTGTTACCCGAACCCCAAAGGGGACTGTTGTGCCAGGTGG---GGGATTTGGGACCGTA-GGAGGGGCCACCATGGGCAGATGTggtgagggaggaaaggagagcagaagaggggaCCCGATGAGCAATCCTTACAC-CCTACCTGCAGTGTCGAAACTGCGTC-CCGCCCACACACTTCCTGCAGAATCTCCCGAAGTCCACACCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30610073 261 + 173848474 CGCTACAGT-AAa-----aataaataaataaataaataaataaataaa------------taaataaaATAGTCCAGTGTTACCCGAACCCCAAAGGGGACTGTTGTGCCAGGTGG---GGGATTTGGGACCGTA-GGAGGGGCCACCATGGGCAGATGTggtgagggaggaaaggagagcagaagaggggaCCCGATGAGCAATCCTTACAC-CCTACCTGCAGTGTCGAAACTGCGTC-CCGCCCACACACTTCCCGCAGAATCTCCCGAAGTCCACACCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     317804 256 +   2037526 CGCTACAGT-AAa-----aataaataaataaataaataaataaataaa--------------------ATAGTCCAGTGTTACCCGAACCCCAAAGGGGACTGTTGTGCCAGGTGGTGGGGGATTTGGGACCGTA-GGAGGGGCCACCATGGGCAGATGTggtgagggaggaaaggagagcagaagaggggaCCCGATGAGCAATCCTTACAC-CCTACCTGCAGTGTCGAAACAGCGTC-CCGCCCACACACTTCCCGCAGAATCTCCCGAAGTCCACACCTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74984242 273 + 122973662 CGCTACAGT-AAa-----aataaataaataaataaataaataaataaataaataaataaataaataaaATAGTCTAGTGTTACTCGAACCCCAAAGGGGACTGTGGTG---GGTGGTGGGGGATTTGGGACCGTA-GGAGGGGCCACCATGGGCAGATGTGGTGAGGGAGGAAAGGGGAGCAGAAGAGGGGACCCGATGAGCAATCCTTACCC-CCTACCTGCAGTGTTGAAACAGCGCC-CCGCCCACACACTTCCCGCAGAATCTCCCGAAGTCCACACCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30862448 266 + 172585720 TGCTACAGt-aaa----aaataaataaataaataaataaataaataaa--------taaataaataaGATCGTCCAGTGTTACCCGAACCCCTGCGGGGACTGTTGTGCCAGGTGGTGGGGGATTTGGGACCGTA-GGAGGGGCCACCATGGGCAGATGTGGCGAGGGAGGAAAGGGG---AGAAGAGGGGTCCCGATGAGCAGTCCTTACAC-CCGACCCGCAGTGTGGAAACAGCGTC-CCGCCCACACACTTCCCACAGAATCTCCCGACGTCCACACCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30151907 266 - 170955103 TGCTACAGt-aaa----aaataaataaataaataaataaataaataaa--------taaataaataaGATCGTCCAGTGTTACCCGAACCCCTGCGGGGACTATTGTGCCAGGTGGTGGGGGATTTGGGACCGTA-GGAGGGGCCACCATGGGCAGATGTGGCGAGGGAGGAAAGGGG---AGAAAAGGGGTCCCGATGAGCAATCCTTACAC-CCGACCGGCAGTGTGGAAACAGCGTC-CCGCCCACACACTTCCCATAGAATCTCCCGAAGTCCACACCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     401156 250 +   1495729 TGCTACAGT-GAA--------------------aaataaataaataaa--------taaataaataaGATCGTCCAGTGTTACCCGAACCCCTGCGGGGACTGTTGTGCCAGGTGGTGGGGGATTTGGGGCCGTA-GGAGGGGCCACCATGGGCAGATGTGGCGAGGGAGGAAAGGGG---AGAAGAGGGGTCCCGATGAGCAGTCCTTACAC-CCGACCCGCAGTGTGGAAACAGCGTC-CCGCCCACACACTTCCCACAGAATCTCCCGACGTCCACACCTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     504598 266 -    863181 TGCTACAGT-GAA----aaataaataaataaataaataaataaataaa--------taaataaataaGATCGTCCAGTGTTACCCGAACCCCTGCGGGGACTGTTGTGCCAGGTGGTGGGGGATTTGGGACCGTA-GGAGGGGCCATCATGGGCAGATGTGGCGAGGGAGGAAAGGGG---AGAAGAGGGGTCCCGATGAGCAATCCTTACAC-CCGACCCGCAGTGTGGAAACAGCGTC-CCGCCCACACACTTCCCACAGAATCTCCCGACGTCCACACCTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29651441 263 -  71996105 TGCTACAGtaaaa--------aaataaatagataaataaataaataaa--------taaataaataaGATCGTCCAGTGTTACCCGAACCCCTGCGGGGACTGTTGTGCCAGGTGGTGGGGGATTTGGGACCGTA-GGAGGGGCCACCATGGGCAGATGTGGCGAGGGAGGAAAGGGG---AGAAGAGGGGTCCCAATGAGCAATCCTTACAC-CCGACCCGCAGTGTGGAAACAGCGTC-CCGCCCACACACTTCCCACAGAATCTCCCGACGTCCACACCTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     384286 262 -    735854 TGCTACAGT-GAA--------aaataaataaatagataaataaataaa--------taaataaataaGATCGTCCAGTGTTACCTGAACCCCTGCGGGGACTGTTGTGCCAGGTGGTGGGGGATTTGGGACCGTA-GGAGGGGCCACCATGGGCAGATGTGGCGAGGGAGGAAAGCGG---AGAAGAGGGGTCCCGATGAGCAATCCTTACAC-CCGACCCGCAGTGTCGAAACAGCGTC-CCGCCCACACACTTCCCACAGAATCTCCCGACGTCCACACCTCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     289786 268 -   1829203 TGCTACAGt-aaaaaataaataaataaataaataaataaataaataaa--------taaataaataaGATCGTCCAGTGTTACCTGAA--TTTGTGGGGACTGTTGTGCCAGGTGGTGGGGGATTTGGGACCGTA-GGAGGGGCCACCATGGGCAGATGTGGTGAGGGAGGAAAGGGG---AGAAGAGGGGTCCAGATGAGCAATCCTTACAC-CCGACCCGCAGTGTGGAAACAGCGTC-CCGCCCACACACTTCCCACAGAATCTCCCGAAGTCCACACCTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30489317 247 + 171630274 TGCTACAGT-AAA-----------------AATACATAAATAAATAAA----------------TAAGACAGTCCAGTGTTACCCAAACCCCAGCGGGGACTGTAGTGCCAGGTGGTGGGGGATTTGGGATGGTA-GGAAGGGTCAGCATGGGCAGATGCAGTGAGGGAGGAAAAGGGAGCAGAAGAGGGGACCCAAGGGGCAATCCTTACACGCCGACCTGCAGTGTCGAAACAGCGTG--C-CCCACACCCTTCTTGCAGAATCTCCGGAACTCCACACCTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           295739 247 +    515838 TGCTACAGT-AAa-----------------aatacataaataaataaa----------------taa-ataaaCCAGTGTTACCCAAACCCCAGTGGGGACTGTGGTGCCAGGTGGTAGGGGATTTGGGAAGGTA-GGAAGGGTCAGCATGGGCAGATGTGGTGAGGGAGGAAAAGAGAGCAGAAGAGGGGACCCAATGAACAGTCCTTACACACTGACCTGCAGTGTCGAAACAGCGTG-CC-CCCACACCCTTCTCGCAGAATCTCCAGAAGTCCACACCTCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     924552 248 -   1771730 TGCTACAGT-AAa-----------------aatacataaataaataaa----------------taaGACAGCCCAATGTTACCCAAACCCCAGCGGGGACTGTAGTGCCAGGTGGTGGGGGATTTGGGACGGGA-GGAAGGGTCAGCATAGGCAGATGTGGTGAGGGAGGAAAGGGGAGCAGAAGAGGGGACCCAATGAGCAATCCTTACACGCCGACCTGCAGTGTCGAAACAGTGTG-CC-CCCACACCCTTCTCGCAGAGTCTCCGGAAGTCCACACCTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     105617 244 -    486031 TGCTACAGT-AAA-----------------AATACATAAATAAATAAG--------------------ATAGTCCAGTGTTACCCAAACCCCAGTAGGGACTGTAGTGCCAGGTGGTGGGGGATTTGGGACGGTA-AGAAGGGTCAGCATGGGCAGATGCGGTGAGGGAGGAAAAGGGAGCAGAAGAGGGGACCCAAGGAGCAATCCTTACACGCCGACCTGCACTGTCGAAACAGCGTA-AC-CCCACACCCTTCTCGAAGAATCTCCGGAAGTCCACACCTCT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           340898 227 +  18854210 ACTTACAGT-AAA-------------------AAAATAA--AATTAAA-----------------------GTCCATTGTTACCCAAACTCCAGCCGAGATTGTGGTGCTGGGTAGGGGGGTATTTAGGAGCACATGAAAAAGCCAGCATGAGCAGACGAGGTG-GGCAGGAAAGGAGAGCAGAGGAGCAGGCCAAGTAAGCAGTCATCACATGGTGACGTGCAGTGTCTTAATGGCATCTCCGCCC------------CAAATTCTCCGGAAGTCGACACTTCC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26357831 136 +  26524999 -----------------------ACCTGAGGTTAAAGACTGAAATTAA----------------------AGTGCAGCGTGACCCAGCATCACCCTGTTTCTGTTT-------------GGGGTTCAGGA------GGCTGGGCCA-----GGCAGGTGGGGTGAGCCCCATAGGGAG-GCAGAGGAGGGGCCCTGGGGCGCCTCC-------------------------------------------------------------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               381863 1241 + 123392446 I
e mm10.chr17               58118297 1418 -  94987271 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M

a score=2322930.000000
s hg38.chr6_GL000254v2_alt  1507265 188 +   4827813 CACTCCAGCCTGGACTTTGATGCTGTGGGCA-------CGCCTCAGAGCCAGAAGTTTATGGCTCCCACCTGCTCAATCTGACAGGAAGCTTCTGCTCCCC-AGTTCTCCCCA-GCCACTGTGGTCTACAGA----TTCCAGGAAACC-CATCCCCCTGTGACCTCATGGTG---TGCTCTGTTC-------TCCACCCTAGGGACCAGAAG
s panTro5.chr6             30376009 188 + 175400573 CACTCCAGCCTGGACTTTGATGCTGTGGGCA-------CGCCTCAGAGCCAGAAGTTTATGGCTCCCACCTGCTCAATCTGACAGGAAGCTTCTGCTCCCC-AGTTCTCCCCA-GCCACTGTGGTCTACAGA----TTCCAGGAAACC-CATCCCCCTGTGACCTGATGGTG---TGCTCTGTTC-------TCCACCCTAGGGACCAGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30610334 188 + 173848474 CACTCCAGCCTGGACTTTGATGCTGTGGGCA-------CGCCTCAGAGCCAGAAGTTTATGGCTCCCACCTGCTCAATCTGACAGGAAGCTTCTGCTCCCC-AGTTCTCCCCA-GCCACTGTGGTCTACAGA----TTCCAGGAAACC-CATCCCCCTGTGACCTCATGGTG---TGCTCTGTTC-------TCCACCCTAGGGACCAGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     318060 188 +   2037526 CACTCCAGCCTGGACTTTGATGCTGTGGGCA-------CGCCTCAGAGCCAGAAGTTTATGGCTCCCACCTGCTCAATCTGACAGGAAGCTTCTGCTCCCC-AGTTCTCCCCA-GCCACTGTGGTCTACAGA----TTCCAGGAAACC-CATCCCCCTGTGACCTCATGGTG---TGCTCTGTTC-------TCCACCCTAGGGACCAGAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74984515 188 + 122973662 CACTCCAGCCTGGACTTTGATGCTGTGGGCA-------CGCCTCAGAGCCAGAAGTTTATGGCTCCCACCGGCTCAACCTGACAGGAAGCGTCTGCTCCCC-AGTTCTCCCCA-GCCACTGTGGTCTACAGA----TTCCAGGAAACC-CATCTCCCCGTGACCTCATGGTG---TGCTCTGTTC-------TCCACCCTAGGGACCAGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30862714 189 + 172585720 CACTCCAGCTTGGACTTTGATGCTGTGGGCA-------CGCCTCAAAGCTAGAAGTTTATGGCACCCACCTGCTCAATCTGACAGGAAGCGTCTGCTCCCC-ACTTCTCCCCA-GCCACTGTGGTCTAGAGA----TTCCAGGAAACCCCAGTTCCCTGTGACCTCATGGTG---TGCTCTGTTC-------TCCACCCTAGGGACCAGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30152173 189 - 170955103 CACTCCAGCTTGGACTTTGATGCTGTGGGCA-------CGCCTCAAAGCTAGAAGTTTATGGCACCCACCTGCTCAATCTGACAGGAAGCGTCTGCTCCCC-AGTTCTCCCCA-GCCACTGTGGTCTAGAGA----TTCCAGGAAACCCCGGTTCCCTGTGACCTCATGGTG---TGCTCTGTTC-------TCCACCCTAGGGACCAGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     401406 189 +   1495729 CACTCCAGCTTGGACTTTGATGCTGTGGGCA-------CACCTCAAAGCTAGAAGTTTATGGCACCCACCTGCTCAATCTGACAGGAAGCGTCTGCTCCCC-AGTTCTCCCCA-GCCACTGTGGTCTAGAGA----TTCCAGGAAACCCCAGTTCCCTGTGACCTCATGGTG---TGCTCTGTTC-------TCCACCCTAGGGACCAGAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     504864 189 -    863181 CACTCCAGCTTGGACTTTGATGCTGTGGGCA-------CGCCTCAAAGCTAGAAGTTTATGGCACCCACCTGCTCAATCTGACAGGAAGCGTCTGCTCCCC-ACTTCTCCCCA-GCCACTGTGGTCTAGAGA----TTCCAGGAAACCCCGGTTCCCTGTGACCTCATGGTG---TGCTCTGTTC-------TCCACCCTAGGGACCAGAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29651704 189 -  71996105 CACTCCAGCCTGGACTTTGATGCTGTGGGCA-------CGCCTCAAAGCTAGAAGTTTATGGCACCCACCTGCTCAATCTAACAGGAAGCGTCTGCTACCA-AGTTCTCCCCA-GCCACTATGGTCTAGAGA----TTCCAGGAAACCCCGGTTCCCTGTGACCTCATGGGG---TGCTCTGTTC-------TCCACCCTAGGGACCAGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     384548 189 -    735854 CACTCCAGCTTGGACTTTGATGCTGTGGGCA-------CGCCTCAAAGCTAGAAGTTTATGGCACCCACCTGCTCAATCTGACAGGAAGCGTCTGCTCCCC-ACTTCTCCCCA-GCCACTGTGGTCTAGAGA----TTCCAGGAAACCTCGGTTCCCTGTGACCTCATGGTG---TGCTCTGTTC-------TCCACCCTAGGGACCAGAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     290054 189 -   1829203 CACTCCAGCCTGGACTTTGATGCTGTGGGCA-------CGCCTCAAAGCTAGAAGTTTATGGCACCCACCTGCTCCATCTGACAGGAAGCGTCTGCTACCC-AGTTCTCCCCA-GCCACTGTGGTCTAGAGA----TTCCAGGAAACCCCAGTTCCCTGTGACCTCATGGTG---TGCTCTGTTC-------TCCACCCTAGTGACCAGAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30489564 187 + 171630274 CACTCCAGCCTGGACTTTGATGCTGTGGGCA-------CACCTCAAAGCCAGAAGTTTATGGCTCCCACCTGCTCAATCTGACAGGAAGCGTCTGCT-TCC-AATTCTCCCCA-GCCACTGTGGTCTAGAGA----TTCTAGGAAATCCCATCTCCCTGTGACCTCATGGTG---TGCTCTTTTT-------TCCACCCCTGGGACCAG-AG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           295986 185 +    515838 CACTCCAGCCTGGACTTTGATGCTGTGAGCA-------CGCCTCAAAGCCAGAAGTTTATGGCTCCCACCTGCTCAATCTGACAGGAAGTGTCTGCTCTCC-AATTCTCCCCA-GCCACTGTGGTCTAGAGA----TTCTAGGAAATCCCATCTCCCTGTGACCTCAT-------CTCTCTTTTC-------TCCACCCCAGGGACCAGAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     924800 189 -   1771730 CACTCCAGCCTGGACTTTGATGCTGCGGGCA-------CGCCTCAAAGCCAGAGGTTTATGACTCCCACCTGCTCAATCTGACAGGAAGCGTCTGCTCTCC-AATTCTCCCCA-GCCTCTGTGGTCTAGAGA----TTCTAGGAAATCCCATCTCCCTGTGACCTCATAATG---TGCTCTTTTC-------TCCACCCCAGGGACCAGAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     105861 189 -    486031 CACTCCAGCCTGGACTTTGATGCTGTGGGCA-------CGCCTCAAAGCCAGAAGTTTATGGCTCCCACCTGCTCAATCTGACAGGAAGCGTCTGCTCTCC-AATTCTCCCCA-GCCACTGTGGTTTAGAGA----GTCTAGGAAATCCCATCGCCCTGTGACCTCATGGTG---TGCTCTTTTC-------TCCACCCCAGGGACCAGAAG
i aotNan1.NW_018496901v1   C 0 I 14
s otoGar3.GL873550           341125 186 +  18854210 CACTCCAGTCTGGACTTTGATGCTCCGGGCA-------CACCTCAAAGTCAGAAGTTTATGGCTCCCACCTGCTCAATCTGACAGGAAGTGTCTCCTCCCC-ATTTCTCCCCA-CCCACTGTGGACAAGAGA----TTCCCAGAAACGCCATCTCCCTGTGACCTCATGGTG---TTCTCTGCTC-------CCCACCCCAGGGA-CAGA--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58119715 188 -  94987271 CATCACAGGCTGGACTCTGATGCCACTGCCA--------GCCTCCTAGCCTGAA--CTATGGCTCTCACCTGCCCAGCGTGACAGGAAGCGGCTCCTCCCC-AATGGCCTCAC-CTCTCTGTAGCCAAGAGA----TTCCAGGAAACCCCATTTCCAAGTGACCTCATGATGCAATACGCTGCTC-------CCCACCCAAGGGACCGAAG-
i mm10.chr17               I 1418 C 0
s canFam3.chr35            26357967 192 +  26524999 CATGGCTGTCTGGACTTTGCCGCCGCAGGCACAGCTCACACCTCATAATCAGA-GCTCCTGGCTCCCACCTGCTC----------------CTTGCTCTCCGAACGCTCTCCACCCCACGGTGGTCACAGGAAGTGTTCCAGGAAAATCCATTTCCCTGTGACTTCATGGCA---CGCTGGGGGCCATGAAGTCCACCCTAGGGACCAGAAG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               381863 1241 + 123392446 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M

a score=30742.000000
s hg38.chr6_GL000254v2_alt  1507453 3 +   4827813 GAG
s panTro5.chr6             30376197 3 + 175400573 GAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30610522 3 + 173848474 GAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     318248 3 +   2037526 GAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74984703 3 + 122973662 GAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30862903 3 + 172585720 GAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30152362 3 - 170955103 GAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     401595 3 +   1495729 GAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     505053 3 -    863181 GAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29651893 3 -  71996105 GAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     384737 3 -    735854 GAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     290243 3 -   1829203 GAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30489751 3 + 171630274 GAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           296171 3 +    515838 GAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     924989 3 -   1771730 GAG
i cebCap1.NW_016107755v1   C 0 C 0
s mm10.chr17               58119903 3 -  94987271 GCG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26358159 3 +  26524999 GAC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               381863 1241 + 123392446 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M
e otoGar3.GL873550           341311 0 +  18854210 C
e aotNan1.NW_018496901v1     106050 14 -    486031 I

a score=283062.000000
s hg38.chr6_GL000254v2_alt  1507456 23 +   4827813 --CCAGGAGTAAAGAACTGGCTTAC
s panTro5.chr6             30376200 23 + 175400573 --CCAGGAGTAAAGCACTGGCTTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30610525 23 + 173848474 --CCAGGAGTAAAGAACTGGCTTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     318251 23 +   2037526 --CCAGGAGTAAAGAACTGGCTTAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74984706 23 + 122973662 --CCAGGAGTAAAGAACTGTCTTAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30862906 23 + 172585720 --CCAGGAGTAAAGAACTGGTTTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30152365 23 - 170955103 --CCAGGAGTAAAGAACTGGTTTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     401598 23 +   1495729 --CCAGGAGTAAAGAACTGGTTTAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     505056 23 -    863181 --CCAGGAGTAAAGAACTGGTTTAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29651896 23 -  71996105 --CCAGGAGTAAAGAACTGGTTTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     384740 23 -    735854 --CCAGGAGTAAAGAACTGGTTTAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     290246 23 -   1829203 --CCAGGAGTAAAGAACTGGTTTAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30489754 23 + 171630274 --CCGGGAGTAAAGAACTGGCTTAC
i calJac3.chr4             C 0 I 281
s saiBol1.JH378341           296174 23 +    515838 --CCAGGAGTAAAGAACTGGCTTAC
i saiBol1.JH378341         C 0 I 301
s cebCap1.NW_016107755v1     924992 23 -   1771730 --CCAGGAGTAAAGAACTGGCTTAC
i cebCap1.NW_016107755v1   C 0 I 309
s aotNan1.NW_018496901v1     106064 23 -    486031 --CCAGGAGTAAAGAACTGGCTTAC
i aotNan1.NW_018496901v1   I 14 I 292
s otoGar3.GL873550           341311 21 +  18854210 ----AGGAGTACACAATCAGCTTAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58119906 23 -  94987271 --ACAGGAGTGGAGAGCTAGGTCAC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26358162 25 +  26524999 ATGGAGGAGTGGCGGATGGGCTGAC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               381863 1241 + 123392446 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M

a score=1856759.000000
s hg38.chr6_GL000254v2_alt  1507479 179 +   4827813 TTGGCCGCCACTGGGAAATTCTGGGTAATTCGAGACGCCCTGGAATTTGGACCCACTCCGCTGATAGGTGGTGGC-----------CAGGGTTC----TAGGGAACACAAGAGGCGGAGCCAGGTGGCTTCCCTGTGCTGGCATTCTTGCctctctctctcttt--------------------c--tctctc-----tctgtctctcAGCCTTGCAGCCG
s panTro5.chr6             30376223 199 + 175400573 TTGGCCGCCACTGGGAAATTCTGGGTAATTCGAGACGCCCTGGAATTTGGACCCACTCCGCTGATAGGTGGTGGC-----------CAGGGTTC----TAGGGAACACAAGAGGCGGAGCCAGGTGGCTTCCCTGTGCTGGCATTCTTGCctctctctctctctttctctctctctgtctctctc--tctctc-----tctgtctctcAGCCTTGCAGCCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30610548 199 + 173848474 TTGGCCGCCACTGGGAAATTCTGGGTAATTCGAGACGCCCTGGAATTTGGACCCACTCCGCTGATAGGTGGTGGC-----------CAGGGTTC----TAGGGAACACAAGAGGCGGAGCCAGGTGGCTTCCCTGTGCTGGCATTCTTGCctctctctctctctttctctctctctgtctctctc--tctctc-----tctgtctctcAGCCTTGCAGCCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     318274 179 +   2037526 TTGGCCGCCACTGGGAAATTCTGGGTAATTCGAGACGCCCTGGAATTTGGACCCACTCCGCTGATAGGTGGTGGC-----------CAGGGTTC----TAGGGAACACAAGAGGCGGAGCCAGGTGGCTTCCCTGTGCTGGCATTCTTGCctctctctctcttt--------------------c--tctctc-----tctgtctctcAGCCTTGCAGCCG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74984729 191 + 122973662 TTGGCCACCACTGGGAAATTCTGGGTAATTCGAGACGCCCTGGAATTTGGACCCACTCCGCTGATAGGTGGTGGC-----------CAGGGTTC----TAGGGAACACAAGAGGCGGAGCCAGGTGGCTTCCCTGTGCTGGCATTCCTGCctctctctctctctctctctctctct--------c--tccctc-----tccctctctcAGCCTTGCAGCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30862929 167 + 172585720 TTGGCCGCCACTGGGAAATTCTGGGTAATTCAAGACGCCCTGGAATTTGGACCCACTCCGCTGATAGGTGGTGGC-----------CAGGGTTC----TAGGGAGCACAGGAGGCGGAGCCGGGTGGCTTCCCTGTGCTGGCATTC------------ctgtct--------------------c--tctctc-----tctctctctctGCCTTGCAGCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30152388 167 - 170955103 TTGGCCGCCACTGGGAAATTCTGGGTAATTCAAGACGCCCTGGAATTTGGACCCACTCCGCTGATAGGTGGTGGC-----------CAGGATTC----TAGGGAGCACAGGAGGCGGAGCCGGGTGGCTTCCCTGTGCTGGCATTC------------ctgtct--------------------c--tctctc-----tctctctctctGCCTTGCAGCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     401621 165 +   1495729 TTGGCCGCCACTGGGAAATTCTGGGTAATTCAAGACGCCCTGGAATTTGGACCCACTCCGCTGATAGGTGGTGGC-----------CAGGGTTC----TAGGGAGCACAGGAGGCGGAGCCGGGTGGCTTCCCTGTGCTGGCATTC------------ctg--t--------------------c--tctctc-----tctctctctctGCCTTGCAGCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     505079 165 -    863181 TTGGCCGCCACTGGGAAATTCTGGGTAATTCAAGACGCCCTGGAATTTGGACCCACTCCGCTGATAGGTGGTGGC-----------CAGGGTTC----TAGGGAGCACAGGAGGCGGAGCCAGGTGGCTTCCCTGTGCTGGCATTC------------ctc--t--------------------c--tctctc-----tctctctctctGCCTTGCAGCCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29651919 179 -  71996105 TTGGCCGCCACTGGGAAATTCTGGGTAATTCAAGACGCCCTGGAATTTGGACCCACTCCGCTGATAGGTGGTGGC-----------CAGGGTTC----TAGGGAGCACAGGAGGCGGAGCCAGGTGGCTTCCCTGTGCTGGCATTCCTGCctctctctctctct--------------------c--tctctc-----tctctctctctGCCTTGCAGCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     384763 169 -    735854 TTGGCCGCCGCTGGGAAATTCTGGGTAATTCAAGACGCCCTGGAATTTGGACCCACTCCGCTGATAGGTGGTGGC-----------CAGGGTTC----TAGGGAGCACAGGAGGCGGAGCCAGGTGGCTTCCCTGTGCTGGCATTC----------ctctctct--------------------c--tctctc-----tctctctctctGCCTTGCAGCCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     290269 172 -   1829203 TTAGCCGCCACTGGGAAATTCTGGGTAATTCAAGACGCCCTGGAATTTGGACCCACTCCGCTGATAGGTGGTGGC-----------CAGGGTTC----TAGGGAGCACAAGAGGCGGAGCCAGGTGGCTTCCCCGTGCTGGCATTC------------CTGCct--------------------c--tctctcctctttctctctctctGCCTTGCAGCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30490058 170 + 171630274 TTGGCCACCACTGGGAAATGCTGGGTAATTCGAGACGCCCTGGAGTTTGGACCCACTCCGCTGATAGGTGGTGGC----------TTAGGGTTC----TAGGGAGCACAAGAGGCGGAGCCAGGTGGCTTCCCTGTGCTGAAATTC------------CTGCCT--------------------TTCTCTCTC-----TCTCTCTCTCAGCCTTGCAGTAC
i calJac3.chr4             I 281 C 0
s saiBol1.JH378341           296498 164 +    515838 TTGGCCGCCGCTGGGAAATGCTGGGTAATTCGAGACGCCCTGGAGTTTGGACCCACTCCGCTGATAGGTGGTGGC----------CCAGGGTTC----TAGGGAGCACAAGAGGCGGAGCCAGGTGGCTTCCCTGTGCTGACATTC------------CTGCCT--------------------T------TA-----TCTCTCGCTCAGCCTTGCAGTAC
i saiBol1.JH378341         I 301 C 0
s cebCap1.NW_016107755v1     925324 160 -   1771730 TTGGCCGCCACTGGGAAATGCTGGGTAATTCCAGACGCCCTGGAGTTTGGACCCACTCTGCTGATGGGTGGTGGC----------CCAGGGTTC----TAGGGAGCACAAGAGGCGGAGCCAGGTGGCTTCCCTGTGCTGACATTC------------CTGCCT--------------------T---------------TCTCTCTCAGCCTTGCAGTAT
i cebCap1.NW_016107755v1   I 309 C 0
s aotNan1.NW_018496901v1     106379 164 -    486031 TTGGCCGCCACTGGGAAATGCTGGGTAATTCGAGACGCCCTGGAGTTTGGACCCACTCCGCTGATAGGTGGTGGC----------CCAGGGTTC----TAGGGAGCACAAGAGGCGGAGCCAGGTGGCTTCCCTGTGCTGACATTC------------CTGCCT--------------------T------TC-----TCTCTCTCTCAGCCTTGCAGTAC
i aotNan1.NW_018496901v1   I 292 C 0
s otoGar3.GL873550           341332 164 +  18854210 TTGCCCACCACTGGGAAATTCCAGGTAATTCGAGATGCCCTGGAGTTTGGACCCACTCAGCTGATGGGTGGTGGC----------CAAGGGCTCTGCATGCAGAGCCCA-GAGGTGGAG-CAGGTTGCTTCCCTGGGCTGACATTC------------CTGCCT--------------------T-------------CCTCTCTGTTGGCCTCCTGGTCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58119929 135 -  94987271 CTGCCTGCCCCTGGGAAACGCTGGGTAG-TCAAGACGCCCTGGAGTTTGGACCTGCTTAGCTG-----------------------CTGGGTTC----TGGGC-------GTGGC--AGCCAGGTGACCTCGCTGAGCTGACATTC------------CTGCCT--------------------T--TCTTTC---------------AGCCTCCGATTCC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26358187 172 +  26524999 CAGGCCACTGCTGGGAAGTGCTAGGTAATGGGAGCCATCCTGGAGTTTGAACCTACTCAGCTGAAGTGTGGTGGTCCTGGCTCAGCTCGGGCTC----AGGAAATGTTAAGAGGTAGAGCTGGGTGGCATCCCCACTGGGACTTTC------------CTGTTG--------------------T-------------CTTCTCTCTCAGCTACCCATGAT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               381863 1241 + 123392446 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     198254 2075 -   1411461 M

a score=620281.000000
s hg38.chr6_GL000254v2_alt  1507658 52 +   4827813 TTTCCCTCT------GCGATTCATGTAAGTGTGACTCGATTTCAGGGAAAGGGAACTC
s panTro5.chr6             30376422 52 + 175400573 TTTCCCTCT------GCGATTCATGTAAGTGTGACTCGATTTCAGGGAAAGGGAACTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30610747 52 + 173848474 TTTCCCTCT------GCGATTCATGTAAGTGTGACTCGATTTCAGGGAAAGGGAACTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     318453 52 +   2037526 TTTCCCTCT------GCGATTCATGTAAGTGTGACTCGATTTCAGGGAAAGGGAACTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74984920 52 + 122973662 TTTCCCTCT------GAGATTCATATAAGTGTGACTCGATTTCAGGGAAAGGGAATTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30863096 52 + 172585720 TTTCACTCT------GCGATTCGTGTAAGTGTGACTCGATTTCAGGGAAAGGGAATTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30152555 52 - 170955103 TTTCACTCT------GCGATTCGTGTAAGTGTGACTCGATTTCAGGGAAAGGGAATTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     401786 52 +   1495729 TTTCACTCT------GCGATTCGTGTAAGTGTGACTCGATTTCAGGGAAAGGGAATTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     505244 48 -    863181 TTTCACTCT------GCGATTCGT----GTGTGACTCGATTTCAGGGAAACGGAATTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29652098 52 -  71996105 TTTCACTCT------GCGATTCGTGTAAGTGTGACTCGATTTCAGGGAAAGGGAATTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     384932 48 -    735854 TTTCACTCT------GCGATTCGT----GTGTGACTCGATTTCAGGGAAACGGAATTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     290441 52 -   1829203 TTTACCTCT------GCGATTCGTGTAAGTGTGACTTGATTTCAGCGAAAGGGAATTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30490228 52 + 171630274 TTCCCCTCT------GTGTTTCCTATAATTGTGACTGGATTTCAGGGGAAGCGATTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           296662 52 +    515838 TTCCCCTCT------GTGTTTCCTATAATTGTGACTCGATTTCAGGGGAAGGGAATTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     925484 52 -   1771730 TTCCTCTCT------GTGTTTCCTATAATTGTGACTCGATTTCAGGGGAAGGGAATTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     106543 52 -    486031 TTCCCCTCT------GTGTTTCCTATAATTGTGACTCGATTTCGGGGGAAGGGAATTC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     200398 52 -   1411461 TTTCCCTCC------GTGACTCATTTAAGTGCCACTCAATTTCAGGGAAAGGGAGCTC
i proCoq1.NW_012149775v1   M 2075 I 26
s otoGar3.GL873550           341496 52 +  18854210 TTTCCTTCT------GTGACTCATTTAAATGCAACTCAATTTCAGGAAAAGGAAATTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58120064 58 -  94987271 TTTGCTTCTGTGACAGTGACGCACTTAAAAGTGACTCAGTTTCAGGGAAAGGAAATTG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26358359 51 +  26524999 GTTCCCTCC------ATGACTCACGCCAAAGTGAAT-GAGTTCAGGGAGAGAGGACTT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               381863 1241 + 123392446 I
e dasNov3.JH567297            49794 2744 +     53444 I

a score=221239.000000
s hg38.chr6_GL000254v2_alt  1507710 23 +   4827813 GCGTGGGCTG---AGGAGACCGGAGT
s panTro5.chr6             30376474 23 + 175400573 GCGTGGGCTG---AGGAGACCGGAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30610799 23 + 173848474 GCGTGGGCTG---AGGAGACCGGAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     318505 23 +   2037526 GCGTGGGCTG---AGGAGACCGGAGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74984972 26 + 122973662 GCGTGGGCTGAGAAGGAGGCCGGAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30863148 26 + 172585720 GCGTGGTCTGAGAAGGAGGCCGGAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30152607 26 - 170955103 GCGTGGTCTGAGAAGGAGGCCGGAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     401838 26 +   1495729 GCGTGGTCTGAGAAGGAGGCCGGAGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     505292 26 -    863181 GCGTGGTCTGAGAAGGAGGCCGGAGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29652150 26 -  71996105 GCGTGGTCTGAGAAGGAGGCCGGAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     384980 26 -    735854 GCGTGGTCTGAGAAGGAGGCCGGAGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     290493 26 -   1829203 GCGTGGTCTGAGAAGGAGGCCGGAGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30490280 26 + 171630274 GCGTGCACTGAGGCAGAGGTCTGAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           296714 26 +    515838 GCGTGGACTGAGGCAGAGGTCTGAGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     925536 26 -   1771730 GCGTGGACTGAGGGAGAGGTCTGAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     106595 26 -    486031 GCGTGGACTGAGGCAGAGGTCTGAGT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           341548 26 +  18854210 ATGTGGACCAAGGCAAAGGCCTCAGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58120122 24 -  94987271 GAGTGGACCGAGTCAGAAGACTGT--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26358410 26 +  26524999 CCATGGCCAGAGGCAGAGGCCTCCCT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               381863 1241 + 123392446 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     200450 26 -   1411461 I

a score=5328653.000000
s hg38.chr6_GL000254v2_alt  1507733 370 +   4827813 GGACGGGCTGGGGAAGGCACCGTGATGCCCGCAACCCCGTCCCTGAAGGTGGTCCATGAGCTGCCTGCCTGTACCCTCTGTGCGGGGCCGCTGGAGGATGCGGTGACCATTCCCTGTGGACACACCTTCTGCCGGCTCTGCCTCCCCGCGCTCTCCCAGATGGGGGCCCAATCCTCGGGCAAGATCCTGCTCTGCCCGCTCTGCCA------AGAGGAGGAGCAGGCAGAGACTCCCATGGCCCCTGTGCCCCTGGGCCCGCTGGGAGAAACTTACTGCGAGGAGCACGGCGAGAAGATCTACTTCTTCTGCGAGAACGATGCCGAGTTCCTCTGTGTGTTCTGCAGGGAGGGTCCCACGCACCAGGCGCACACCG
s panTro5.chr6             30376497 370 + 175400573 GGACGGGCTGGGGAAGGCACCGTGATGCCCGCAACCCCGTCCCTGAAGGTGGTCCATGAGCTGCCCGCCTGTACCCTCTGTGCGGGGCCGCTGGAGGATGCGGTGACCGTTCCCTGTGGACACACCTTCTGCCGGCTCTGCCTCCCCGCGCTCTCCCAGATGGGGGCCCAATCCTCGGGCAAGATCCTGCTCTGCCCGCTCTGCCA------AGAGGAGGAGCAGGCAGAGACTCCCATGGCCCCTGTGCCCCTGGGCCCGCTGGGAGAGACTTACTGCGAGGAGCATGGCGAGAAGATCTACTTCTTCTGCGAGAACGATGCCGAGTTCCTCTGTGTGTTCTGCAGGGAGGGTCCCACGCACCAGGCGCACACCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30610822 370 + 173848474 GGACGGGCTGGGGAAGGCACCGTGATGCCCGCAACCCCGTCCCTGAAGGTGGTCCATGAGCTGCCCGCCTGTACCCTCTGTGCGGGGCCGCTGGAGGATGCGGTGACCGTTCCCTGTGGACACACCTTCTGCCGGCTCTGCCTCCCCGCGCTCTCCCAGATGGGGGCCCAATCCTCGGGCAAGATCCTGCTCTGCCCGCTCTGCCA------AGAGGAGGAGCAGGCAGAGACTCCCATGGCCCCTGTGCCCCTGGGCCCGCTGGGAGAGACTTACTGCGAGGAGCACGGCGAGAAGATCTACTTCTTCTGCGAGAACGATGCCGAGTTCCTCTGTGTGTTCTGCAGGGAGGGTCCCACGCACCAGGCGCACACCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     318528 370 +   2037526 GGACGGGCTGGGGAAGGCACCGTGATGCCCGCAACCCCGTCCCTGAAGGTGGTCCATGAGCTGCCTGCCTGTACCCTCTGTGCGGGGCCGCTGGAGGATGCGGTGACCGTTCCCTGTGGACACACCTTCTGCCGGCTCTGCCTCCCCGCGCTCTCCCAGATGGGGGCCCAATCCTCGGGCAAGATCCTGCTCTGCCCGCTCTGCCA------AGAGGAGGAGCAAGCAGAGACTCCCATGGCCCCTGTGCCCCTGGGCCCGCTGGGAGAGACTTACTGCGAGGAGCACGGCGAGAAGATCTACTTCTTCTGCGAGAACGATGCCGAATTCCTCTGTGTGTTCTGCAGGGAGGGTCCCACGCACCAGGCGCACACCG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74984998 370 + 122973662 GGACGGGCTGGGGAAGGCACCGTGATGCCCGCAACCCCTTCCCTGAAGGTGGTCCATGAGCTGCCTGCCTGTACCCTCTGTGCGGGGCCGCTGGAGGATGCGGTGACCGTTCCCTGTGGACACACCTTCTGCCGGCTCTGCCTCCCCGCGCTCTCCCAGATGGGGGCCCAGCCCTCGGGCAAGATCCTGCTCTGCCCGCTCTGCCA------AGAGGAGGAGCAGGCAGAGACTCCCATGGCCCCTGTGCCCCTGGGCCCGCTGGGAGAGACTTACTGCGAGGAGCACGGCGAGAAGATCTACTTCTTCTGCGAGAACGATGCCGAGTTCCTCTGTGTGTTCTGCAGGGAGGGTCCCACGCACCAGGCGCACACCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30863174 370 + 172585720 GGACGGGCTGGGGAAGGCACCGTGATGCCCTCAACCCCGTCCCTGAAGGTGGTCCACGAGCTGCCCGCCTGTACCCTCTGTGTGGGGCCGCTGGAGGATGCGGTGACCGCTCCCTGTGGACACACCTTCTGCCGGCTCTGCCTCCCCACGCTCTCCCAGATGGGGGCCCAGTCCTCGGGCAAGATCCTGCTCTGCCCGCTCTGCCA------AGAGGAGGAGCAGGCAGAGACTCCCATGGCCACTGTGCCCCTGGGCCCGCTGGGAGAGACTTACTGCGAGGAGCACGGGGAGAAGATCTACTTCTTCTGCGAGAACGACGCCGAGTTCCTCTGTGTGTTCTGCAGAGAAGGTCCCACCCACCAGGCGCACACCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30152633 370 - 170955103 GGACGGGCTGGGGAAGGCACCGTGATGCCCTCAACCCCGTCCCTGAAGGTGGTCCACGAGCTGCCCGCCTGTACCCTCTGTGTGGGGCCGCTGGAGGATGCGGTGACCGCTCCCTGTGGGCACACCTTCTGCCGGCTCTGCCTCCCCACGCTCTCCCAGATGGGGGCCCAGTCCTCGGGCAAGATCCTGCTCTGCCCGCTCTGCCA------AGAGGAGGAGCAGGCAGAGACTCCCATGGCCCCTGTGCCCCTGGGCCCGCTGGGAGAGACTTACTGTGAGGAGCACGGGGAGAAGATCTACTTCTTCTGCGAGAACGACGCCGAGTTCCTCTGTGTGTTCTGCAGAGAAGGTCCTACCCACCAGGCGCACACCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     401864 370 +   1495729 GGACGGGCTGGGGAAGGCACCGTGATGCCCTCAACCCCGTCCCTGAAGGTGGTCCACGAGCTGCCCGCCTGTACCCTCTGTGTGGGGCCGCTGGAGGATGCGGTGACCGCTCCCTGTGGGCACACCTTCTGCCGGCTCTGCCTCCCCACGCTCTCCCAGATGGGGGCCCAGTCCTCGGGCAAGATCCTGCTCTGCCCGCTCTGCCA------AGAGGAGGAGCAGGCAGAGACTCCCATGGCCCCTGTGCCCCTGGGCCCGCTGGGAGAGACTTACTGCGAGGAGCACGGGGAGAAGATCTACTTCTTCTGCGAGAACGACGCCGAGTTTCTCTGTGTGTTCTGCAGAGAAGGTCCCACCCACCAGGCGCACACCG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     505318 370 -    863181 GGACGGGCTGGGGAAGGCACCGTGATGCCCTCAACCCCGTGCCTGAAGGTGGTCCACGAGCTGCCCGCCTGTACCCTCTGTGTGGGGCCGCTGGAGGATGCGGTGACCGCTCCCTGTGGACACACCTTCTGCCGGCTCTGCCTCCCCACGCTCTCCCAGATGGGGGCCCAGTCCTCGGGCAAGATCCTGCTCTGCCCGCTCTGCCA------AGAGGAGGAGCAGGCAGAGACTCCCATGGCCCCTGTGCCCCTGGGCCCGCTGGGAGAGACTTACTGCGAGGAGCACGGGGAGAAGATCTACTTCTTCTGCGAGAACGACGCCGAGTTCCTCTGTGTGTTCTGCAGAGAAGGTCCCACCCACCAGGCGCACACCG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29652176 370 -  71996105 GGACAGGCTGGGGAAGGCACCGTGATGCCCTCAACCCCGTCCCTGAAGGTGGTCCACGAGCTGCCCGCCTGTACCCTCTGTGTGGGGCCGCTGGAGGATGCGGTGACCGCTCCCTGTGGACACACCTTCTGCCGGCTCTGCCTCCCCACGCTCTCCCAGATGGGGGCCCAGTCCTCGGGCAAGATCCTGCTCTGCCCGCTCTGCCA------AGAGGAGGAGCAGGCAGAGACTCCCATGGCCCCTGTGCCCCTGGGCCCGCTGGGAGAGACTTACTGCGAGGAGCACGGGGAGAAGATCTACTTCTTCTGCGAGAACGACGCCGAGTTCCTCTGTGTGTTCTGCAGAGAAGGTCCCACCCACCAGGCGCACACCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     385006 370 -    735854 GGACGGGCTGGGGAAGGCACCGTGATGCCCTCAACCCCGTCCCTGAAGGTGGTCCACGAGCTGCCCGCCTGTACCCTCTGTGTGGGGCCGCTGGAGGATGCGGTGACCGCTCCCTGTGGACACACCTTCTGCCGGCTCTGCCTCCCCACGCTCTCCCAGATGGGGGCCCAGTCCTCGGGCAAGATCCTGCTCTGCCCGCTCTGCCA------AGAGGAGGAGCAGGCAGAGACTCCCATGGCCCCTGTGCCCCTGGGCCCGCTGGGAGAGACTTACTGCGAGGAGCACGGGGAGAAGATCTACTTCTTCTGCGAGAACGACGCCGAGTTCCTCTGTGTGTTCTGCAGAGAAGGTCCCACCCACCAGGCGCACACCG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     290519 370 -   1829203 GGACGGGCTGGGGAAGGCACCGTGATGCCCTCAACCCCGTCCCTGAAGGTGGTCCACGAGCTGCCCGCCTGTACCTTCTGTGTGGGGCCGCTGGAGGATGCGGTGACCGCTCCCTGTGGACACACCTTCTGCCGGCTCTGCCTCCCCACGCTCTCCCAGATGGGGGCCCAGTCCTCGGGCAAGATCCTGCTCTGCCCGCTCTGCCA------AGAGGAGGAGCAGGCAGAAACTCCCATAGTCCCGGTGCCCCTGGGCCCGCTGGGAGAGACTTACTGCGAGGAGCACGGGGAGAAGATCTACTTCTTCTGTGAGAACGACGCCGAGTTCCTCTGTGTGTTCTGCAGAGAAGGTCCCACCCACCAGGCGCACACCG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30490306 370 + 171630274 GGACGAGCTGGAGAAGGCACAGTGATGCCCTCAACCCTGTCCCTAAAGGTGGTCCACGGGCCGCCCTCCTGTACCTGCTGTGCGGGGCCGCTGGAGGATGCGGTGACCGCTCCCTGTGGACACACCTTCTGCCGGCTCTGCCTCCCCAAGCTCTCCCATATGGGAGCCCAGCCCTCAGGCAAGATCCTGCTCTGTCCGCTCTGCCA------AGGGGAGGAGGAGGCAGAGACGCCCATGGCCCCTGTGCCCCTGGGCCCGCTGGGGGAGACTTACTGTGAGGAGCACGGCGAGAAGATCTACTTCTTCTGCGAGAACGACACCGACTTCCTCTGTGTGTTCTGCAGGGAGAGCCCCTCGCACCAGGCGCACACCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           296740 370 +    515838 GGACGGGCTGGGGAAGGCACCGTGATGCCCTCAACCCCGTCCCTGAAGGTGGTCCACGAGCCGCCCGCCTGTACCTGCTGTGCGGGGCCGCTGGAGGATGCAGTGACCGCTCCCTGTGGACACACCTTCTGCCGGCTCTGCCTCCCCAAGCTCTCCCAGATGGGGGCCCAGCCCTCAGGCAGGATCCTGCTCTGCCCGCTCTGCCA------AGGGGAGGAGGAGGCAGAGACGCCCATGGCCCCTGTGCCCCTGGGCCCGCTAGGGGAGACTTACTGCGAGGAGCACGGCGAGAAGATCTACTTCTTCTGCGAGAATGACACCGACTTCCTCTGTGTGTTCTGCAGGGAGGGCCCCTCGCACCAGGCGCACACCG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     925562 369 -   1771730 GGACGGGCTGG-GAAGGCACCGTGATGCCCTCAACCCCGTCCCTAAAGGTGGTCCAGGAGCCGCCCGCCTGTACCTGCTGTGCGGGGCCGCTGGAGGATGCAGTGACCGCTCCCTGTGGACACACCTTCTGCCAGCTCTGCCTCCCCAAGCTCTCCCAGATGGGGGCCCAGCCCTCAGGCAAGATCCTGCTCTGCCCGCTCTGCCA------AGGGGAGGAGGAGGCAGAGACGCCCATGGCCCCTGTGCCCCTGGGCCCGCTGGGGGAGACTTACTGCGAGGAGCACGGCGAGAAGATCTACTTCTTCTGCGAGAATGACACCGACTTCCTCTGTGTGTTCTGCAGGGAGGGCCCCTCGCACCAGGCGCACACCG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     106621 370 -    486031 GGACGGGCTGGAGAAGGCACCGTGATGCCCTCAACCCCGTCCCTAAAGGTGGTCCACGAGCCGCCCGCCTGTACCTGCTGTGCGGGGCCGCTGGAGGATGCGGTGACCGCTCCCTGTGGACACACCTTCTGCAGGCTCTGCCTCCCCAAGCTCTCCCAGATGGGGGCCCAGCCCTCAGGCAAGATCCTGCTCTGCCCGCTCTGCCA------AGGGGAGGAGGAGGCAGAGACACCCATGGCCCCTGTGCCCCTGGGCCCGCTAGGGGAGACTTACTGCGAGGAGCACGGCGAGAAGATCTACTTCTTCTGCGAGAATGACACCGACTTCCTCTGTGTGTTCTGCAGGGAGGGCCCCTCGCACCAGGCGCACACCG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     200476 348 -   1411461 GGACAGACTGGGGAAGACACCGTGATGCCCTCAACCCCATCCCTGCAGGTGGTCCACGA-GGGGCCAGCTGTCCTGCCTGCACAGGGCTCCTGGAGGATGTGGTGACCGCCACCTGTGGACACACCTTCTGCCGGCTCTGCCTCCGGCCACCCGCCCAGATGGGGACTGAGCCCTCGGGCAGGGTCCTGCTCTGCCCACCCTGCCA------GGGGGAGGAGCAGACAGAGGCCCCTGT-----------CCCTGGGCCTGCTGGGGGAGACTCACCGCGAGGAGGACGGTGAGAAGTTCTACTTCTTCTGTGAGAAGG-TGCCGAGTTCC--TGTGTGTTCTGCTGG------CCTTCCC-CCAGGCCCACACCA
i proCoq1.NW_012149775v1   I 26 C 0
s otoGar3.GL873550           341574 366 +  18854210 GGACAG-CTGGGGAAGGCACTGTGATGCCCTCAACCCCCACCCTGCAGGTGGTCCGTGAGGGGGCCACCTGTCCTGCCTGCACAAGGCCCCTGGAGGATGCAGTGACCACTACCTGTGGACACA---TCTGCCAGCTCTGCCTCCTGCTGCCCTCCCAGATGGGAGCTCAGCCCTCAGGCAGGATCCTACTCTGCCCGCTCTACCA------GGAGGAGAAGCAGTCAGAGGCCCCCATGGCCCCTGTCCCCCTAGGCCCGCTGGAGGAGACTTACTGTAAGGAGCACGGTGAGAAGATATACTTCTTCTGTGAAAAGGATGCTGAGTTCCTTTGTGTGTTCTGCCGGGAGAGTCCTTCCCACCAGGCTCACACTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58120146 355 -  94987271 GGACAGGCAGGGGAAGGCACGGTGATGCCCTCAACCCGGTCCCTGCGGGGACTTCACCAAGTA---GCCTGTCCTGTCTGCACCCGACCCTTGCAGGATGCGGTGACCACAGCCTGCGGACACACTGTCTGCCTACTCTGCCTCCC---GCGCACCCCAATGGGAGCCCAG---------------CTGCTGTGCCCTCTCTGTCAGGGGGCAGAAGAGGAGAAAATCCAGGCCGCAGTGGCCCCGGTGTCCCTAGGTCCCCTGAGCGAGACCTACTGTGAAGAGCACGGAGAGAAGATCTATTTCTTCTGTAAGACAGACGCGGAGCTGCTCTGCGTGTTCTGCAGGGAGGGCCCCGCCCACCAGGCACACACTG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26358436 334 +  26524999 GGACAGGCTGGGG-AGGTACCATGATGCTTTCCAGCCCTTCCCGCCAGG-----------------------------------AGACCCCTCAGGGATGCAGTAATTGCCCTCTGTGGACATGCCCTCTGCTGGCCGTGCCTCCTCCTGCCCTCCCAGATGGGGGCCCAGCCATCCTGCGAGGTCCTGCTTTGTCCATGCTGCAA------GAACCAGGAGCGCCCAAAGACACCCATGGTGCCAGTGCCACTGGGCCTGCTTGGAGACACATACTATGAGGAACATGGAGAGAAGATTTACTTCTTCTGTGAGACCGACACATAGCTCCTCTGTGTGCTCTTTTGGGAGGGTCCTGACCACCAGGGCCACACCA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               381863 1241 + 123392446 I
e dasNov3.JH567297            49794 2744 +     53444 I

a score=1727624.000000
s hg38.chr6_GL000254v2_alt  1508103 116 +   4827813 TGGGGTTCCTGGACGAGGCCATTCAGCCCTACCGGGTAAGAAG-TGTAGCTTTACCTAGGGCCTGTTTGGGGCAGGATGATGTCCTGTT----AT---GAGGGGAGGAAATCGGGCGGGGATCT
s panTro5.chr6             30376867 116 + 175400573 TGGGGTTCCTGGACGAGGCCATTCAGCCCTACCGGGTAAGAAG-TGTAGCTTTACCTAGGGCCTGTTTGGGGCAGGATGATGTCCTGTT----AT---GAGGGGAGGAAATCGGGCGGGGATCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30611192 116 + 173848474 TGGGGTTCCTGGACGAGGCCATTCAGCCCTACCGGGTAAGAAG-TGTAGCTTTACCTAGGGCCTGTTTGGGGCAGGATGATGTCCTGTT----AT---GAGGGGAGGAAATCGGGCGGGGATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     318898 115 +   2037526 TGGGGTTCCTGGACGAGGCCATTCAGCCCTACCGGGTAAGAAG-TGTAGCTTTACCTAGGGCCTGTTTGGGGCAGGATGATGTCCTGTT----AT---GAGGGGAGGAAATCGGG-GGGTATCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74985368 116 + 122973662 TGGGGTTCCTGGACGAGGCCATTCAGCCCTACCGGGTAAGAGG-TGTGGCTTTACCTAGGGCCTGTTTGGGGCAGAATGATGTCCTGTT----AT---GAGGGGAGGAAATCGGGTGGGGATCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30863544 116 + 172585720 TGGGATTTCTGGACGAAGCCATTCAGCCCTACCGGGTAAGAAG-TGTGACTTTACCTAGGGCCTGTTTGGGGCAGGTTGATGTCCTGTT----AT---GATGGGAGGAAATCGGGTGGGGATCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30153003 116 - 170955103 TGGGATTCCTGGACGAAGCCATTCAGCCCTACCGGGTAAGAAG-TGTGACTTTACCTAGGGCCTGTTTGGGGCAGGATGATGTCCTGTT----AT---GATGGGAGGAAATCGGGTGGGGATCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     402234 115 +   1495729 TGGGATTCCTGGACGAAGCCATTCAGCCCTACCGGGTAAGAAG-TGTCACTTTACCTAGGGCC-GTTTGGGGCAGGATGATGTCCTGTT----AT---GATGGGAGGAAATCGGGTGGGGATCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     505688 116 -    863181 TGGGATTCCTGGACGAAGCCATTCAGCCCTACCGGGTAAGAAG-TGTGACTTTACCTAGGGCCTGTTTGGGGCAGGATGATGTCCTGTT----AT---AATGGGAGGAAATCGGGTGGGGATCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29652546 116 -  71996105 TGGGATTCCTGGACGAGGCCATTCAGCCCTACCGGGTAAGAAG-TGTGACTTTACGTAGGGCCTGTTTGGGGCAGGATGATGTCCTGTT----AT---GATGGGGGGAAATCGGGTGGGGATCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     385376 116 -    735854 TGGGATTCCTGGACGAAGCCATTCAGCCCTACCGGGTAAGAAG-TGTGACTTTACCTAGGGCCTGTTTGGGGCAGGATGATGTCCTGTT----AT---AATGGGAGGAAATCAGGTGGGGATCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     290889 116 -   1829203 TGGGATTCCTGGACGAAGCCATTCAGCCCTACCGGGTAAGAAG-TGTGACTTTACCTAGGGCCTATTTGGGGCAGGATGATGTCCTGTT----AC---AATGGGAGGAAATCGGGTGGGCATCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30490676 116 + 171630274 TGAGGTTCCTGGACGAGGCCATTCAGCCCTACCGGGTAAAAAG-CGTGGCTTTACCTAGGGCCTGTTTGGGGCAGGATGATGTCCGGTG----AT---GAGGGGAGGGAATGGAGTGGGGATCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           297110 116 +    515838 TGAGGTTCCTGGACGAGGCCATTCAGCCCTACCGGGTAAGAAG-TGTGGCTTTACCTAGGGCCTGTTTGGGGCAGGATGATGTCCTGTG----AT---GAGGGGAGGGAATGGGGTGGGGATCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     925931 116 -   1771730 TGAGGTTCCTGGACGAGGCCATTCAGCCCTACCGGGTAAGAAG-TGTGGCTTCACCTAGGGCCTGTTTGGGGCAGGATGATATCCTGTG----AT---GAGGGGAGGGAATGGGGTAGGGATCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     106991 116 -    486031 TGAGGTTCCTGGACGAGGCCATTCAGCCCTACCGGGTAGGAAG-TGTGGCTTTACCTAGGGCCTGTTTGGGGCAGGATGATGTCCTGTG----AT---GAGGGGAGGGAATGGGGTGGGGATCT
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               383104 114 + 123392446 TGGGGCTCCTTAACAAGGCCGTTCAGCCCCACGGG--GAGAAG-TGCGGCTTTACCCTGGGCCTGTTCGGGGCAGGACGATGTGCTGTC----CT---GGGTGGAGGGGATGGGGTGGGGATCT
i micMur3.chr6             I 1241 C 0
s proCoq1.NW_012149775v1     200824 116 -   1411461 TGGGGTTCCTTGAGGAGGCCATTCAGCCCCACTGGCTAAGAAG-TGCGGCTTTACCTCGGGCCTGTTCAGGGCAGGACAATGTGCTGTT----GT---GGGTGGAGGGAATGGGATGGGGATCT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           341940 116 +  18854210 TGGGGTTCCTTGATGAGGCCATTCAGCCCTACCGGGTAAGAAG-CGGAGCTCTACCTTGGGCCTGTTTAGGGCGGGACAATGTTCGGTT----GT---GGGTAGAGAGAATGGGATAGGGACCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58120501 114 -  94987271 TGGGGTTCCTGGATGAAGCCATCCAACCCTACAGGGTAAGGAGCTGAGGCGCTGCTTCGTG-------GGGGCAGGATGGTGACCTGATGTGGGT---GAGTGAAGGAAAAGGGATAGAGATTT
i mm10.chr17               C 0 I 24
s canFam3.chr35            26358770 117 +  26524999 AGGGGGTCCTGGACGCAGCCATTCAGCCCTACTAGGTAAGGAG-CAAGGCTTCCCCTTGGGCCTGCATGGGT--GGACTGTGTGCTGTC----ATCCACAGTGAAGGGAATGGGCCAAGGGTCT
i canFam3.chr35            C 0 C 0
e dasNov3.JH567297            49794 2744 +     53444 I

a score=55290.000000
s hg38.chr6_GL000254v2_alt  1508219 3 +   4827813 GGA
s panTro5.chr6             30376983 3 + 175400573 GGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30611308 3 + 173848474 GGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     319013 3 +   2037526 GGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74985484 3 + 122973662 GGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30863660 3 + 172585720 GGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30153119 3 - 170955103 GGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     402349 3 +   1495729 GGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     505804 3 -    863181 GGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29652662 3 -  71996105 GGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     385492 3 -    735854 GGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     291005 3 -   1829203 GGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30490792 3 + 171630274 GGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           297226 3 +    515838 GGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     926047 3 -   1771730 GGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     107107 3 -    486031 GGA
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               383218 3 + 123392446 GGA
i micMur3.chr6             C 0 I 1852
s proCoq1.NW_012149775v1     200940 3 -   1411461 GGA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           342056 3 +  18854210 GGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26358887 3 +  26524999 GGA
i canFam3.chr35            C 0 C 0
e mm10.chr17               58120615 24 -  94987271 I
e dasNov3.JH567297            49794 2744 +     53444 I

a score=56538.000000
s hg38.chr6_GL000254v2_alt  1508222 4 +   4827813 TGAA
s panTro5.chr6             30376986 4 + 175400573 TGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30611311 4 + 173848474 TGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     319016 4 +   2037526 TGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74985487 4 + 122973662 TGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30863663 4 + 172585720 TGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30153122 4 - 170955103 TGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     402352 4 +   1495729 TGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     505807 4 -    863181 TGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29652665 4 -  71996105 TGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     385495 4 -    735854 TGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     291008 4 -   1829203 TGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30490795 4 + 171630274 TGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           297229 4 +    515838 TGAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     926050 4 -   1771730 TGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     107110 4 -    486031 TGAA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     200943 4 -   1411461 TGAA
i proCoq1.NW_012149775v1   C 0 I 1264
s otoGar3.GL873550           342059 4 +  18854210 TGAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26358890 4 +  26524999 TGAT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615 24 -  94987271 I
e dasNov3.JH567297            49794 2744 +     53444 I

a score=21945.000000
s hg38.chr6_GL000254v2_alt  1508226 3 +   4827813 A-----GG-
s panTro5.chr6             30376990 3 + 175400573 A-----GG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30611315 3 + 173848474 A-----GG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     319020 3 +   2037526 A-----GG-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74985491 3 + 122973662 A-----GG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30863667 8 + 172585720 AGACCTGG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30153126 8 - 170955103 AGACCTGG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     402356 8 +   1495729 AGACCTGG-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     505811 8 -    863181 AGACCTGG-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29652669 8 -  71996105 AGACCTGG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     385499 8 -    735854 AGACCTGG-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     291012 8 -   1829203 AGACCTGG-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30490799 8 + 171630274 AGGCCGGG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           297233 8 +    515838 AGGCCTGG-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     926054 8 -   1771730 AGGCCTGG-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     107114 8 -    486031 AGGCCGGG-
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           342063 8 +  18854210 GGGCCTGG-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26358894 3 +  26524999 ------GGG
i canFam3.chr35            C 0 I 47
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615 24 -  94987271 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I

a score=652580.000000
s hg38.chr6_GL000254v2_alt  1508229 61 +   4827813 CTTCCACATCAGGGAACCCTAAGGTTACAGGGACTTTCGAGGCATTCCCAGACTGAAGGCA
s panTro5.chr6             30376993 61 + 175400573 CTTCCACATCAGGGAACCCTAAGGTTATAGGGACTTTCGAGGCATTCCCAGACTGAAGGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30611318 61 + 173848474 CTTCCACATCAGGGAACCCTAAGGTTATAGGGACTTTCGAGGCATTCCCAGACTGAAGGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     319023 61 +   2037526 CTTCCACATCAGGGAACCCTAAGGTTACAGGGACTTTCGAGGCATTCCCAGACTGAAGGCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74985494 61 + 122973662 CTTCCACATCAGGGAACCCTGAGGTCACAGGGACTTTCGAGGCATTCCCAGACTGAAGGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30863675 61 + 172585720 CTTCCACATCAGGGAACTCTAAGGTTATAGGGACTTTCGAGGCATTCCCAGACTGAAGGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30153134 61 - 170955103 CTTCCACATCAGGGAACCCTAAGGTTATAGGGACTTTCGAGGCATTCCCAGACTGAAGGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     402364 61 +   1495729 CTTCCACATCAGGGAACCCTAAGGTTATAGGGACTTTCGAGGCATTCCCAGACTGAAGGCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     505819 61 -    863181 CTTCCACATCAGGGAACCCTAAGGTTATAGGGACTTTGGAGGCATTCCCAGACTGAAGGCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29652677 61 -  71996105 CTTCCACATCAGGGAACCCTAAGGTTACAGGGACTTTCAAGGCATTCCCAGACTGAAGGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     385507 61 -    735854 CTTCCACATCAGGGAACCCTAAGGTTATAGGGACTTTGGAGGCATTCCCAGACTGAAGGCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     291020 61 -   1829203 CTTCCACATCAGGGAACCCTAAGGTTATAGGGACTTTCCAGGCATTCCCAGACTGAAGGCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30490807 60 + 171630274 CTTCCACATCAGGGGATCCTAAGGCTATAGGAACTTT-GAGACATTCCCAAACTGAAGGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           297241 60 +    515838 CTTCCACATCAGGGGATCCTAAGGCTATAGGAACTTT-GAGACATTCCCAGACTGAAGGCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     926062 60 -   1771730 CTTCCACATCAGGGGATCCTAAGGCTATAGGAACTTT-GAGACATTCCCAGACTGAAGACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     107122 60 -    486031 CTTCCACATCAGGGGATCCTAAGGTTATAGGAACTTT-GAGACATTCCCAGACTGAAGGCA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           342071 60 +  18854210 CTTCCATGTCAGGAGACCCCGAGGC-AGAAAGACACTAGGAATACTCCCAGACTGAAAAGG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615 24 -  94987271 I
e dasNov3.JH567297            49794 2744 +     53444 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897 47 +  26524999 I

a score=184550.000000
s hg38.chr6_GL000254v2_alt  1508290 25 +   4827813 GATAGGGCTCCA-CTTG------------------------GATGTGTGG
s panTro5.chr6             30377054 25 + 175400573 GATAGGGCTCCA-CTTG------------------------GATGTGTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30611379 25 + 173848474 GATAGGGCTCCA-CTTG------------------------GATGTGTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     319084 25 +   2037526 GATAGGGCTCCA-CTTG------------------------GATATGTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74985555 25 + 122973662 GATAGGGTTCCA-CTTG------------------------GATGTATGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30863736 25 + 172585720 GATA-GGCTCCACCTTG------------------------GATGTGTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30153195 25 - 170955103 GATA-GGCTCCACCTTG------------------------GATGTGTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     402425 25 +   1495729 GATA-GGCTCCACCTTG------------------------GATGTGTGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     505880 24 -    863181 GATA-GGCTCCA-CTTG------------------------GATGTGTGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29652738 24 -  71996105 GATA-GGCTCCA-CTTG------------------------GATGTGTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     385568 24 -    735854 GATA-GGCTCCA-CTTG------------------------GATGTGTGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     291081 24 -   1829203 GATA-GGCTCCA-CTTG------------------------GATGTGTAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30490867 49 + 171630274 GATAGGGCTCAG-CTCAGGtgtgctgatgtgctgatgtgctgatgtgcGG
i calJac3.chr4             C 0 I 8
s saiBol1.JH378341           297301 25 +    515838 GATAGGGCTCCA-CTCG------------------------GATGTGCGG
i saiBol1.JH378341         C 0 I 8
s cebCap1.NW_016107755v1     926122 25 -   1771730 GATAGAGCTCCA-CTCT------------------------GATGTGCGG
i cebCap1.NW_016107755v1   C 0 I 23
s aotNan1.NW_018496901v1     107182 41 -    486031 GATAGGGCTCCA-CTCGGTTGTGCGGATGTGCG--------GATGTGCGG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           342131 25 +  18854210 GACATAGCTCCT-CTTG------------------------GATATATAG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            52538 25 +     53444 GACGTGGCTGCA-CCTG------------------------GCCATGTGA
i dasNov3.JH567297         I 2744 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615 24 -  94987271 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897 47 +  26524999 I

a score=73866.000000
s hg38.chr6_GL000254v2_alt  1508315 14 +   4827813 TAGTTCCTGGTCTG
s panTro5.chr6             30377079 14 + 175400573 TAGTTCCTGGTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30611404 14 + 173848474 TAGTTCCTGGTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     319109 14 +   2037526 TAGTTCCTGGTCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74985580 14 + 122973662 TAGTTCCTGCTCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30863761 14 + 172585720 TAGTTCCTGGTCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30153220 14 - 170955103 TAGTTCCTGGTCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     402450 14 +   1495729 TAGTTCCTGGTCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     505904 14 -    863181 TAGTTCCTGGTCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29652762 14 -  71996105 TAGTTCCTGGTCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     385592 14 -    735854 TAGTTCCTGGTCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     291105 14 -   1829203 TAAGTCCTGGTCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30490924 12 + 171630274 GAGTTC-CGGGCT-
i calJac3.chr4             I 8 C 0
s saiBol1.JH378341           297334 13 +    515838 GAGTTCGCGGGCT-
i saiBol1.JH378341         I 8 C 0
s aotNan1.NW_018496901v1     107223 13 -    486031 GAGTTCGCGGGCT-
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           342156 14 +  18854210 GAGGTTATTGTCTC
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            52563 12 +     53444 GAGCTCACTCTT--
i dasNov3.JH567297         C 0 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615 24 -  94987271 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897 47 +  26524999 I
e cebCap1.NW_016107755v1     926147 23 -   1771730 I

a score=5125210.000000
s hg38.chr6_GL000254v2_alt  1508329 490 +   4827813 GGGGGAACTTCAGCTCCAGCTCTCAGAGGACCCCACAGAGGTGGAG---------------------------TGCAAAGAACTGTAGCCTTGGCTTCACTCACTATGGAAAGAAAGCTCCAATGCCGAGTGGGATCTTCTGCAGATTATGGGCAGGGTAAACTTGTTCTCCCAGGATCCAGACTGGAAATGGGGTTTATAGGGCCCTGACTGCCAGGGCGCA--GAGGGGAGGGAGGAGCTGGGAAGGGGAACCTGCTAGCACTGCTCTTCTTCTTGAGAAAGGGAGGGTGGCAGTAGTCCAGAATTGTGAGAATTCCCCATCTGGccttgggg-cacttt-----cctgtcagcctctcagatctctctcttgtcatccagtcaccaggtctggaagtggttaccttagaaacatctcccaaatctttaattctgccttatcctcacagccaggttctccctatctcttgc---gcagactttgcagtctccatggcatttcctgtctccattctcaccctttcca
s panTro5.chr6             30377093 490 + 175400573 GGGGGAACTTCAGCTCCAGCTCTCAGAGGATCCCACAGAGGTGGAG---------------------------TGCAAAGAACTGTAGCCTTGGCTTCACTCACTATGGAAAGAAAGCTCCAATGCCGAGTGGGATCTTCTGCAGATTATGGGCAGGGTAAACTTGTTCTCCCAGGATCCAGACTGGAAATGGGATTTATAGGGCCCTGACTGCCAGGGCGCA--GAGGGGAGGGAGAAGCTGGGAAGGGGAACCTGCTAGCACTGCTCTTCTTCTTGAGAAAGGGAGGGTGGCAGTAGTCCAGAATTGTGAGAATTCCCCATCTGGCCTTGGGG-CACTTT-----CCTGTCAGCCTCTCAGATCTCTCTCTTGTCATCCAGTCACCAGGTCTGGAAGTGGTtaccttagaaacatctcccaaatctttaattctgccttatcctcacagccaggttctccctatctcttgc---gcagactttgcagtctccatggcatttcctgtctccattctcaccctttcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30611418 490 + 173848474 GGGGGAACTTCAGCTCCAGCTCTCAGAGGATCCCACAGAGGTGGAG---------------------------TGCAAAGAACTGTAGCCTTGGCTTCACTCACTATGGAAAGAAAGCTCCAATGCCGAGTGGGATCTTCTGCAGATTATGGGCAGGGTAAACTTGTTCTCCCAGGATCCAGACTGGAAATGGGATTTATAGGGCCCTGACTGCCAGGGCGCA--GAGGGGAGGGAGGAGCTGGGAAGGGGAACCTGCTAGCACTGCTCTTCTTCTTGAGAAAGGGAGGGTGGCAGTAGTCCAGAATTGTGAGAATTCCCCATCTGGccttgggg-cacttt-----cctgtcagcctctcagatctctctcttgtcatccagtcaccaggtctggaagtggttaccttagaaacatctcccaaatctttaattctgccttaccctcacagccaggttctccctatctcttgc---gcagactttgcagtctccatggcatttcctgtctccattctcaccctttcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     319123 490 +   2037526 GGGGGAACTTCAGCTCCAGCTCTCGGAGGACCCCACAGAGGTGGAG---------------------------TGCAAAGAACTGTAGCCTTGGCTTCACTCACTATGGAAAGAAAGCTCCAATGCCGAGTGGGATCTTCTGCAGATTATGGGCAGGGTAAACTTGTTCTCCCAGGATCCAGACTGGAAATGGGATTTATAGGGCCCTGACTGCCAGGGCGCA--GAGGGGAGGGAGGAGCTGGGAAGGGGAACCTGCTAGCACTGCTCTTCTTCTTGAGAAAGGGAGGGTGGCAGTAGTCCAGAATTGTGAGAATTCCCCATCTGGCCTTGGGG-CACTTT-----CCTGTCAGCCTCTCAGATCTCTCTCTTGTCATACAGTCACCAGGTCTGGAAGTGGTTACCTTAGAAACACCTCCCAAATCTTTAATTCTGCCATATCCTCACAGCCAGGTTCTCCCTatctcttgc---gcagactttgcagtctccatggcatttcctgtctccattctcaccctttcca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74985594 487 + 122973662 GGGGGAACTTCAGCTCCAGCTCTCAGAGGACCCCACAGAGATGGAG---------------------------TGCAAAGAACTGTAGCCTTGGCTTCACTCACTATGGAAAGAAAGCCCCAGTGCTGAGTGGGATCTTCTGCAGATTATGGGCAGGGTAAACTTGTTCTCCCAGGATCCAGACTGGAAATGGGATTTATAGGTCCCTGACTGCCAGGGCGCA--GAGGGGAGGGAGGAGCAGGGAAGGGGAACCTGCTAGCACTGC---TCTTCTTGAGAAAGGGAGGGTGGCAGTAGTCCAGGATTGTGAGAATTCCCCATCTGGccttgggg-cacttt-----cctgtcagcctctcagatctctctcttgtcatccagtcaccaggtctggaagtgctttccttagaaacatctcccaaatctttaattctgccttatcctcacagccaggttctccctatctcttgc---tcagactttgcagtctccatggcattccttgtctccattctcaccctttcca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30863775 484 + 172585720 GGGGGAACTTCAGCTCCAGCTCTCAGAGGACCCCTCAGAGATGGAG---------------------------TGCAAAGAACTGTAGCCTTGGCTTCACTCACTATGGAAAGAAAGCTGCAGTGC-AAGTGGAATCTTCTGCAGATTATGGGCAGGGTGAATTTGTTCTCCCAGGATCCAGACTGGAAATGGGATTTCTAGGGCCCTGACTGCCAGGGCGCA--GAGGGGAGGGAGGAGCT-----GGGGAACCTGCTAGCACTACTCTCCTTCTTGAGAAAGGGAGGGCGGCAGTCGTCCAGAATTGTGAGAATTTTCCATCTGATCTTGGGG-CACTTT-----CCCGTCAGCCTCTCAGATCTCTCTCTTGTCAACCAGTCACCAGGTCTGGAAGTGGTTTCCTTAGAAACATCTCCCAAATCTTTAATTctgccttatcctgtcagccaggttctccctatctcttgc---ccagactttgcagtctcaactgcattccctgtctccattcccaccctttcca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30153234 484 - 170955103 GGGGGAACTTCAGCTCCAGCTCTCAGAGGACCCCTCAGAGATGGAG---------------------------TGCAAAGAACTGTAGCCTTGGCTTCACTCACTATGGAAAGAAAGCTGCAGTGC-AAGTGGAATCTTCTGCAGATTATGGGCAGGGTGAATTTGTTCTCCCAGGATCCAGACTGGAAATGGGATTTCTAGGGCCCTGACTGCCAGGGCGCA--GAGGGGAGGGAGGAGCT-----GGGGAACCTGCTAGCACTACTCTCCTTCTTGAGAAAGGGAGGGCGGCAGTCGTCCAGAATTGTGAGAATTTTCCATCTGATCTTGGGG-CACTTT-----CCCGTCAGCCTCGCAGATCTCTCTCTTGTCAACCAGTCACCAGGTCTGGAAGTGGTTTCCTTAGAAACATCTCCCAAATCTTTAATTctgccttatcctgtcagccaggttctccctatctcttgc---ccagactttgcagtctcaactgcattccctgtctccattcccaccctttcca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     402464 484 +   1495729 GGGGGAACTTCAGCTCCAGCTCTCAGAGGACCCCTCAGAGATGGAG---------------------------TGCAAAGAACTGTAGCCTTGGCTTCACTCACTATGGAAAGAAAGCTGCAGTGC-AAGTGGAATCTTCTGCAGATTATGGGCAGGGTGAATTTGTTCTCCCAGGATCCAGACTGGAAATGGGATTTCTAGGGCCCTGACTGCCAGGGTGCA--GAGGGGAGGGAGGAGCT-----GGGGAACCTGCTAGCACTACTCTCCTTCTTGAGAAAGGGAGGGCGGCAGTCGTCCAGAATTGTGAGAATTTTCCATCTGATCTTGGGG-CACTTT-----TCCGTCAGCCTCTCAGATCTCTCTCTTGTCAACCAGTCACCAGGTCTGGAAGTGGTTTCCTTAGAAACATCTCCCAAATCTTTAATTctgccttatcctgtcagccaggttctccctatctcttgc---ccagactttgcagtctcaactgcattccctgtctccattcccaccctttcca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     505918 483 -    863181 GGGGGAACTTCAGCTCCAGCTCTCAGAGGACCCCTCAGAGATGGAG---------------------------TGCAAAGAACTGTAGCCGTGGCTTCACTCACTGTGGAAAGAAAGCTGCAGTGC-AAGTGGAATCTTCTGCAGATTATGGGCAGGGGGAATTTGTTCTCCCAGGATCCAGACTGGAAATGGGATTTCTAGGGCCCTGACTGCCAGGGCGCA--GAGGGGAGGGAGGAGCT-----GGGGAACTTGCTAGCACTGCTCTCCTTCTTGAGAAAGGGAGGGCGGCAGT-GTCCAGAATTGTGAGAATTTCCCATCTGATCTTGGGG-CACTTT-----CCCATCAGCCTCTCAGATCTCTCTCTTGTCAACCAGTCACCAGGTCTGGAAGTGGTTTCCTTAGAAACATCTCCCAAATCTTTAATTctgccttatcctgtcagccaggttctccctatctcttgc---ccagactttgcagtctcaactgcattccctgtctccattcccaccctttcca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29652776 482 -  71996105 GGGGAA--CTCAGCTCCAGCTCTCAGAGGACCCCTCAGAGAGGGAG---------------------------TGCAAAGAACTGTAGCCTTGGCTTCACTCACTGTGGAAAGAAAGCTGCAGTGC-AAGTGGAATCTTCTGCAGATGATGGGCAGGGTGAGTTTGTTCTCCCAGGATCCAGACTGGAAATGGGATTTCTAGGGCCCTGACTGCCAGGGCGCA--GAGGGGAGGGAGGAGCT-----GGGGAACCTGCTAGCACTGCTCTCCTTCCTGAGAAAGGGAGGGCGGCAGTCGTCCAGAATTGTGAGAATTTCCCATCTGATCTTGGGG-CACTTT-----CCCGTCAACCTCTCAGATCTCTCTCTTGTCAACCAGTCACCAGGTCTGGAAGTGGTTTCCTTAGAAACATCTCCCAAATCTTTAATTctgccttatcctgtcagccaggttctccccatctcttgc---ccagactttgcagtctcaactgcattccctgtctctattcccaccctttcca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     385606 483 -    735854 GGGGGAACTTCAGCTCCAGCTCTCAGAGGACCCCTCAGAGATGGAG---------------------------TGCAAAGAACTGTAGCCGTGGCTTCACTCACTGTGGAAAGAAAGCTGCAGTGC-AAGTGGAATCTTCTGCAGATTATGGGCAGGGGGAATTTGTTCTCCCAGGATCCAGACTGGAAATGGGATTTCTAGGGCCCTGACTGCCAGGGCGCA--GAGGGGAGGGAGGAGCT-----GGGGCACTTGCTAGCACTGCTCTCCTTCTTGAGAAAGGGAGGGCGGCAGT-GTCCAGAATTGTGAGAATTTCCCATCTGATCTTGGGG-CACTTT-----CCCATCAGCCTCTCAGATCTCTCTCTTGTCAACCGGTCACCAGGTCTGGAAGTGGTTTCCTTAGAAACATCTCCCAAATCTTTAATTctgccttatcctgtcagccaggttctccctatctcttgc---ccagactttgcagtctcaactgcattccctgtctccattcccaccctttcca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     291119 484 -   1829203 GGGGGAACTTCAGCTCCAGCTCTCAGAGGACCCCTCAGAGATGGAG---------------------------TGCAAAGAACTGTAGCCTTGGCTTCACTCACTGTGGAAAGAAAGCTGCAGTGC-AAGTGGAATCTTCTGCAGATTATGGGCAGGGTGAATTTGTTCTCCCAGGATCCAGACTGGAAATGGGATTTCTAGGGCCCTGACTGCCAGGGCGCA--GAGGGGAGGGAGGAGCT-----GGGGAACCTGCTAGCACTGCTCTCCTTCTTGAGAAAGGGAGGGCGGCAGTTGTCCAGAATTGTGAGAATTTCCCATCTGATCTTGGGG-CACTTT-----CCCGTCAGCCTCTCAGATCTCTCTCTTGTCAACCAGTCACCAGGTCTGGAAGTGGTTTCCTTAGAAACATCTCCCAAATCTTTAATTctgccttatcctgtcagccaggttctccctatctcttgc---ccagactttgcagtctcaactgcattccctgtctccattcccaccctttcca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30490936 482 + 171630274 GTGGGAACTTCAGCTCCGGCTCTCAGAGGACTCCACAGAGGTGGGG---------------------------TGCACAGAACTAGAGCCTTGGCTTCACTCGCTGTGGAAGGAAAGCC-CAGTGCCGAGTGGGATCTTCTGTGGGCTATGGGCAAGGTGAACTTGTTCTCCCAGGATCCACACTGGATACGGGATTTATAGGGCCCTGACTGCC----------GAGGGGAGGGAGGAGCTGGGAAAAGGAACGGGCTAGTGCTGCTCTTCTTC---AGAAAGGGAGGGCGGCAGTAGTCCAGAATTGTGAGAATTCCCCATCTGGTCTC-CGG-CATTTTCCATCCCCGACAGCctctcagatctcgctcttgtcatccagtcaccaggtctggaagtggtttcctcagaaacatctcccgaatctttaattctgccttatccccacagccaggatcaccccatctctttc---ccagactttgcggtctccagggcattccctgtctccattctcaccttttcta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           297347 486 +    515838 GTGGGAACTTCAGCTCCGGCTCTCAGAGGACTCCACAGAGGTGGGG---------------------------CGCACAGAACTAGAGCCTTGGCTTCACTCACTGTGGAAGGAAAGCC-CAGTGCCGAGTGGGATCTTCTGCGGGTTATGGGCGGGGTGAACTTGTTCTCCCAGGATCCACACTGGATATGGGGTTTATAGGGCCCTGACTGCCA----GCG--GAGGGGAGGGAGGAGCTGGGAAAAGGAACCTGTTAGTGCTGCTCTTCGTC---AGAAAGGGAGGGCAGCAGTAGTCCAGAACTGTGAGAATTCCCCATCTGGTCTC-CGG-CACTTTCCCTTCCCATCAGCCTCTCAGACCTCGCTCTTGTCATCAAGTCACCAGGTCTGGAAGTGGTTTCCTCCGCAACATCTCCCGAATCTTTAATTCTGCCTTATCCCCACAGCCAGGATCTCCCCGGCTCTTGC---CCAGACTTCGCAGTCTCCAGTGCATTCCCTGTCTCCATTCTCACTTTTTCTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     926170 486 -   1771730 GTGGGAGCTTCAGCTCCAGCTCTCAGAGGACTCCACAGAGGTGGGG---------------------------TGCACAGAACTAGAGCCTTGGCTTCACTCACTGTGGAAGGAAAGCC-CAGTGCCGAGTGGGATCTTCTGTGGGTTATGGGCAGGGTGAACTTGTTCTCCCAAGATCCACACTGGATACGGGATTTACAGGGCCCTGACTGCCG----GCC--GAGAGGTGGGAGGAGCTGGGAAAAGGAACCGGTTAGTGCTGCTCTTCTTC---AGAAAAGGAGGGCGGCAGTAGTCCAGAATTGTGAGAATTCCCCATCTGGTCTC-CGG-CACTTTCCATTCCCATCAGCctctcagatctcgctcttgtcatccagtcaccaggtctggaagtggtttcctcagaaacatctcctgaatctttaattctgacttactcccacagccaggatctccccgtctcttgc---ccaaactttgcggtctccagtgtattccctgtctccgttctcactttttcta
i cebCap1.NW_016107755v1   I 23 C 0
s aotNan1.NW_018496901v1     107236 486 -    486031 GTGGGAACTTCAGCTCCGGCTCTCAGAGGACTCCACAGAGGTGGAG---------------------------TGCACAGAACTAGAGTCTTGGCTTCACTCACTGTGGAAGGAAAGCC-CAGTACCGACTGGGATCTTCTGCGGGTTATAGGCAGGGTGAACTTGTTCTCCCAGGATCCACGCTGGATACGGGATTTATAGGACCCTGACTGCCG----GCC--GAGGGGAGGGAGGAGCTGAGAAAAGGAACCAGTTAGTGCTGCTCTTCTTC---AGAAAGGGAGGGCGGCAGTAATCCAGAATTGTGAGAATTCCCCATCTGGTCTC-CGG-CACTTTCCATTCCCGTCAGCCTCTCAGATCTCGCTCTTGTCATCCAGTCACCAGGTCTGGAAGTGGTTTCCTCAGAAACATCTCCCGAATCTTTAATTCTGCCTTATCCCCACAGCCAGGATCTCCCcgtttctcgc---tcagactttgccgtctccagtgcatttcctgtctccattctcactttttcta
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           342170 486 +  18854210 AGGGGGACTTTAGAGCAAGCCCTCAGAGGACCCCACAGTGATGAAG---------------------------CCCAGAGAACTGCAGCTGTGGTTTTGCTCACTAAGGACAGACAGCCCTGGTGCAGAGTAGGATCTCCTGCAGGTTATAGACAGGATGAACTTGTTCTCCCAGGGCCTAGACTGGATATGGGATTAACAAGACCCTGATCTCTGGAGATCA--GAGGAAAGAGAGGAGCAGACAAGGGCAACCAGCAAGGGCTGC---TCTTGCTGAAAAGGGGAGGGTGGCAGTAGTCCAGCATTATAAGAATTTCCCACCTGGTcttggggtcactatccattcctgcctgcctctcagatctctctcttatcatctagtcactaggtctggaagtggctttctcaggaacatcttcagaatcttgaactct-------ctccatagccaggccctccccatctctcac---ctctattttgaagtctctagtgcattccctgtctccatctgtaccctttcca
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH567297            52575 470 +     53444 -AGGAGACTTGAGCTCCAGC-CTCAGAGGACTCTCCACA--TGGAGCCAGCCCCGTGGCTGCCCTGTGGACCCCCCAGTGCAGTGAAGAATTGGC----CTCACTGCTGGCAGAACCCCAC----CTGAGAAGGAACCCCTGCTGGCTGCAGGCA-GGTGCACCTG---CCCCAGGATCCACCTGAGCCATGGACTGACCACGACCCTGA--ACTGGGGTCCAAGGAAAGGAGGGAAGGGAA-----GGGCATCCTGCAGGCACGCCCCTTCTTCTTGAGAAAGGGAGGCACAGAGGAGCCCAGCACTGCAGGAATGTGCCCTGGGGTCGA-GGG-CACTG------CTCGCTGTCCTCCCA---------------------TCACCAGGTCTTGAAGAGGCTTCCCCAGAAACAT---CCTGGTATTTAACTCTGCCTT--CCCCAAACCCAGG-CCCCCCCAGCTCTCACCAACCAGAGTCGGGGTGCTCTCAGAAGGCTCCCTCCTGTGTTCTCGCCCCTTCTA
i dasNov3.JH567297         C 0 N 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615  24 -  94987271 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897  47 +  26524999 I

a score=1147829.000000
s hg38.chr6_GL000254v2_alt  1508819 108 +   4827813 gtcaccttccaatctgctgggagacagatcctcctaaaacacaaagtca--------------ctcatctgcacaaaatcc-tcccatgta-tacctagtgcccaaagaaagtccaaggtcttt
s panTro5.chr6             30377583 108 + 175400573 gtcaccttccaatctgctgggagacagatcctcttaaaacacaaagtca--------------ctcatctgcgcaaaatcc-tcccatgta-tacctagtgcccaaagaaagtccaaggtcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30611908 108 + 173848474 gtcaccttccaatctgctgggagacagatcctcttaaaacacaaagtca--------------ctcatctgcgcaaaatcc-tcccatgta-tacctagtgcccaaagaaagtccaaggtcttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     319613 108 +   2037526 gtcaccttccaatctgctgggagacagatcctcttaaaacacaaagtca--------------ctcatctgcgcaaaatcc-tcccatgca-tacctagtgcccaaagaaagtccaaggtcttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74986081 108 + 122973662 gtcaccttccaatctgctgggagacagatcctcctaaaacacaaagtca--------------ctcatctgctcaaaatcc-tcccatgta-tccctagtgcccaaagaaagtccaacgtcttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30864259 108 + 172585720 gtcacctttcaatctgctgggagacagatcctgctaaaacacaaagtca--------------ctcctctgctcaaaatcc-tcccatgta-tccctagtgcccaaagaaagtccaatgtcttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30153718 108 - 170955103 gtcacctttcaatctgctgggagacagatcctcctaaaacacaaagtca--------------ctcctctgctcaaaatcc-tcccatgta-tccctagtgcccaaagaaagtccaatgtcttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     402948 108 +   1495729 gtcacctttcaatctgctgggagacagatcctcctaaaacataaagtca--------------ctcctctgttcaaaatcc-tcccatgta-tccctagtgcccaaagaaagtccaatgtcttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     506401 108 -    863181 gtcacctttcaatctgctgggagacagatcctcctaaaacacaaagtca--------------ctcctctgctcaaaatcc-tcccatgta-tccctagtgcccaaagaaagtccaacgtcttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29653258 108 -  71996105 gtcacctttcaatctgctgggagacagatcctcctaaaacacaaagtca--------------ctcctctgctcaaaatcc-tcccatgta-tccctagtgcccaaagaaagtccaatgtcttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     386089 108 -    735854 gtcacctttcaatctgctgggagacagatcctcctaaaacacaaagtca--------------ctcctctgctcaaaatcc-tcccatgta-tccctagtgcccaaagaaagtccaacgtcttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     291603 108 -   1829203 gtcaccttccaatctgctgggagacagatcctcctaaaacacaaagtca--------------ctcctctgctcaaaatcc-tcccatgta-tccctagtgcccaaagaaagtccaatgtcttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30491418 108 + 171630274 gtcaccttccaatctgctgggagacaggtcttcctaaaacccaaagtca--------------ctcctctgcttagactct-gtccgggta-tccctagtgcccaaagaaagtccagtgtcttt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           297833 108 +    515838 GTCACCCTCCAATCTGTTGGGAGACAGGCCTTCCTAAAACCCAAAGTCA--------------CTCCTCTGCTCAGAATCC-GTCCACGTA-TCCCTAGTGCCCAAAGAAAGTCCAGTGTCTTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     926656 108 -   1771730 gtcaccttccaatctgctgggagacaggtcttcctaaaacccaaagtca--------------ctcctctgctcagaatcc-gtccacgta-tccctagtgcccaaagaaagtccagggtcttt
i cebCap1.NW_016107755v1   C 0 I 2616
s aotNan1.NW_018496901v1     107722 108 -    486031 gtcaccttccaatctgctgggagacaggtcttcctaaaacccaaagtca--------------ctcctcta-tcagaatccggtccacgta-cctctagtgcccaaagaaagtccagtgtcttt
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           342656 121 +  18854210 gttgccctccaatctgtt-ggagggagatcctctgaaaacacaaagccaatccaatcatgttgcttcccttctcaaaatcc-ctccatggattccctagtgtccaaagaaagtccactgtctt-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615  24 -  94987271 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897  47 +  26524999 I

a score=1818402.000000
s hg38.chr6_GL000254v2_alt  1508927 203 +   4827813 agcaagacattcaaggccctttgcagtcgggatccttcctccctgtccggcctcatcgctcagcctccctcctcaaggcaccacgtgtctggccagactgagctgcacttgctgtt-ttttcctgagttgtcttattcattcctgcttccaatactttttgcacatagtctcttcctcctagaatactcttctcccTTCCTCCC
s panTro5.chr6             30377691 203 + 175400573 agcaagacattcaaggccctttgctgtcgggatccttcctccctgtccggcctcatcgctcagcctccctcctcaaggcaccacgtgtctggccagactgagctgcgcttgctgtt-ttttcctgagttgtcttattcattcctgcttccgatactttttgcacatagtctcttcctcctagaatactcttctcccCTCCTCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30612016 203 + 173848474 agcaagacattcaaggccctttgctgtcgggatccttcctccctgtccggcctcatcgctcagcctccctcctcaaggcaccacgtgtctggccagactgagctgcgcttgctgtt-ttttcctgagttgtcttattcattcctgcttccgatactttttgcacatagtctcttcctcctagaatactcttctcccctcctccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     319721 203 +   2037526 agcaagacattcaaggccctttgcagtcgggatccttcctccctgtccggcctcatcgctcagcctccctcctcaaggcaccacgtgtctggccagactgagctgcgcttgctgtt-ttttcctgagttgtcttattcattcctgcttccgatactttttgcacatagtctcttcctcctagaatactcttctcccCTCCTCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74986189 203 + 122973662 agcaagacattcaagttcctttgcagtcaggatccttcctccctgtccggcctcatcgctcagccgccctcctcaaggcaccacgtgtctggccagactgagttgctcttgctgtt-ttttcctgagttgtcttattcattcctgcttccaatactttttgcgcatagtctcttcctcctagaatactcttctcccGTCCTCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30864367 204 + 172585720 agcaagacattcaagaccctttgtagtcgggatccttcctccccatccagcctcatcgctcagccaccctcctcaaggcaccatatgtctagccagactgagctccgtttgctgttattttcccgaactgtcttattcattcctgcttccagtactttttgaacatagtctcttcctcctagaatactcttctcACCTTCTTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30153826 204 - 170955103 agcaagacattcaagaccctttgtagtcgagatccttcctccccatccagcctcatcgctcagccaccctcctcaaggcaccatatgtctagccagactgagctccgtttgctgttattttcccgaactgtcttattcattcctgcttccagtactttttgaacatagtctcttcctcctagaatactcttctcACCTTCTTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     403056 204 +   1495729 agcaagacattcaagaccctttgtagtcgagatccttcctccccatccagcctcatcgctcagccaccctcctcaaggcaccatatgtctagccagaatgagctccatttgctgttattttcccgaactgtcttattcattcctgcttccagtactttttgaacatagtctcttcctcctagaatactcttctcaccttcttcc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     506509 204 -    863181 agcaagacattcaaggccctttgtagtcgggatccttcctccccatccagcctcatcgctcagccaccctcctcaaggcaccatatgtctagccagactgagctgcgtttgctgttattttccccaactgtcttattcattcctgcttccagtactttttgaacatagtatcttcctcctagaatactcttctcATCTTCTTCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29653366 204 -  71996105 agcaagacattcaaggccctttgtagtcgggatccttcctcctcatccagcctcatcgctcagtcaccctcctcaaggcaccatatgtctagccagactgagctgcgtttgctgttattttcccgaactgtcttattcattcctgcttccagtactttttgaacatagtctcttcctcctagaatattcttctcccCTTCTTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     386197 204 -    735854 agcaagacattcaaggccctttgtagtcgggatccttcctccccatccagcctcatcgctcagccaccctcctcaaggcaccatatgtctagccagactgagctgcgtttgctgttattttccccaactgtcttattcattcctgcttccagtactttttgaacatagtatcttcctcctagaatactcttctcaccttcctcc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     291711 204 -   1829203 agcaagacattcaaggccctttgtaatcgggatccttcctccccatccagcctcatcgctcagccaccctcctcaaggcaccatatgtctagccagactgagctgcatttgctgttattttcccaaactgtcttattcattcctgcttccagtactttttgaacatagtctcttcctcctagaatactcttctcccCTTCTTCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30491526 197 + 171630274 agcaaaatattcaaggccctttgcaatcaggatcctgcctccccatccagcctcatcgttcagatgccctcctcgaggcacc------ccagccagactgagttgcgcttgctgtt-ttttcctgaactgtcttattcattcctccttccaatactttttgcacttagtctctttctcctagaatactcttctgtcctcctccc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           297941 198 +    515838 AGCAAAATATTCAAGGCCcttcgcagtcgggatcctgcctccctgtccagcctcatcgctcagacgccctcctccaggcaccatgtgtccagccagactgagctgcgcttgctatc-ttttcctgaactgtcttattctttcctgcttccaacactttttgcacatagtctctttctcc-----tactcttctcctctcctccc
i saiBol1.JH378341         C 0 I 313
s aotNan1.NW_018496901v1     107830 201 -    486031 agcaaaaccttcaaggcccttcgcagtcgggatcctgcctctgcatccagcctcatcgctcagccactctcctccaggcaccatgtgtccagccagactgagctgcgcttgctgtt-ttttcctgaactgtcttactcattcctgcttccaatactttttgcac--agtctctttctcctagaatactcttctctcctcctccc
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           342777 184 +  18854210 agcaggccactc-aggccctttgcagtcaggctcctgccttcctgtccacttttctttctcagcctccctcctca--gcaccatgtctccagccaggctgagctgcacctgctgct--------------gcttatttgtt-ctgtttctagtccttttt--acacagtttcttcctcctagaatgctttcttccccACCTCCC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615  24 -  94987271 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897  47 +  26524999 I
e cebCap1.NW_016107755v1     926764 2616 -   1771730 I

a score=48704.000000
s hg38.chr6_GL000254v2_alt  1509130 12 +   4827813 ACCTCTCTCTCT-
s panTro5.chr6             30377894 12 + 175400573 ACCTCTCTCTCT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30612219 12 + 173848474 acctctctctct-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     319924 12 +   2037526 ACCTCTCTCTCT-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74986392 11 + 122973662 ACCTCTCTTTC--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30864571  9 + 172585720 ACCTCTCTC----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30154030  9 - 170955103 ACCTCTCTC----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     403260  9 +   1495729 acctctctc----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     506713  9 -    863181 ACCTCTCTC----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29653570  9 -  71996105 ACCTCTCTC----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     386401  9 -    735854 acctctctc----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     291915  9 -   1829203 ACCTCTCTC----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30491723 12 + 171630274 atctctctgtct-
i calJac3.chr4             C 0 I 295
s aotNan1.NW_018496901v1     108031 12 -    486031 atctctctctct-
i aotNan1.NW_018496901v1   C 0 I 316
s otoGar3.GL873550           342961 13 +  18854210 ATCCCTTTTTTCT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615 24 -  94987271 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897 47 +  26524999 I
e saiBol1.JH378341           298139 313 +    515838 I
e cebCap1.NW_016107755v1     926764 2616 -   1771730 I

a score=5548.000000
s hg38.chr6_GL000254v2_alt  1509142 2 +   4827813 GT
s panTro5.chr6             30377906 2 + 175400573 Ct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30612231 2 + 173848474 ct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     319936 2 +   2037526 Ct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74986403 1 + 122973662 -t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30864580 1 + 172585720 -t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30154039 1 - 170955103 -t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     403269 1 +   1495729 -t
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     506722 1 -    863181 -T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29653579 1 -  71996105 -T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     386410 1 -    735854 -t
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     291924 1 -   1829203 -t
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           342974 2 +  18854210 GT
i otoGar3.GL873550         C 0 I 17
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615 24 -  94987271 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897 47 +  26524999 I
e saiBol1.JH378341           298139 313 +    515838 I
e aotNan1.NW_018496901v1     108043 316 -    486031 I
e cebCap1.NW_016107755v1     926764 2616 -   1771730 I
e calJac3.chr4             30491735 295 + 171630274 I

a score=154778.000000
s hg38.chr6_GL000254v2_alt  1509144 19 +   4827813 TTTTAAGTATACAATTCAG
s panTro5.chr6             30377908 19 + 175400573 ttttaagtatacaattcag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30612233 19 + 173848474 ttttaagtatacaattcag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     319938 19 +   2037526 ttttaagtatacaattcag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74986404 19 + 122973662 ttttaagtatacaattcag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30864581 19 + 172585720 ttttaagtatacaattcag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30154040 19 - 170955103 ttttaagtatacaattcag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     403270 19 +   1495729 ttttaagtATACAATTCAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     506723 19 -    863181 TTTTAAGTATACAATTCAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29653580 19 -  71996105 TTTTAAGTACACAATTCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     386411 19 -    735854 ttttaagtATACAATTCAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     291925 19 -   1829203 ttttaagtatacaattcag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30492030 19 + 171630274 TGTTAAGTATACAATTCAG
i calJac3.chr4             I 295 C 0
s otoGar3.GL873550           342993 19 +  18854210 ttttaagtatacagttcag
i otoGar3.GL873550         I 17 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615 24 -  94987271 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897 47 +  26524999 I
e saiBol1.JH378341           298139 313 +    515838 I
e aotNan1.NW_018496901v1     108043 316 -    486031 I
e cebCap1.NW_016107755v1     926764 2616 -   1771730 I

a score=35262.000000
s hg38.chr6_GL000254v2_alt  1509163 5 +   4827813 GGGCA
s panTro5.chr6             30377927 5 + 175400573 gggca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30612252 5 + 173848474 GGGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     319957 5 +   2037526 gggca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74986423 5 + 122973662 gggca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30864600 5 + 172585720 gggca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30154059 5 - 170955103 gggca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     403289 5 +   1495729 GGGCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     506742 5 -    863181 GGGCG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29653599 5 -  71996105 GGGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     386430 5 -    735854 GGGCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     291944 5 -   1829203 gggca
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           343012 5 +  18854210 gagca
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615 24 -  94987271 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897 47 +  26524999 I
e saiBol1.JH378341           298139 313 +    515838 I
e aotNan1.NW_018496901v1     108043 316 -    486031 I
e cebCap1.NW_016107755v1     926764 2616 -   1771730 I
e calJac3.chr4             30492049 0 + 171630274 C

a score=2463332.000000
s hg38.chr6_GL000254v2_alt  1509168 449 +   4827813 CTAAGTCCTTTtc--tttttttt--------------tttattatacat---gttctgggatacatatgcagaacgtgcaggtttgttacataggtatatacgtgccatggtggtttgctgcacccatcaatccatcatctacattaggtatttctcctaatgctatccctcccctagtcccccaagccctgacaggccccgatgtgtgatgttcccctccctgtgtccatgtgttctcattgtt--------------------cacctcccacttatgagtaagaacatgtggtgtttggttttctgttcctgtgttagtttgctgagaatgatggtttccagcttcatccatatccctgcaaaggacatgaacacat-cttttttatgcctgcatagtattccatggcatatatgtgccatattttctttatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaa
s panTro5.chr6             30377932 447 + 175400573 ctaagtCCTtttc----tctttt--------------tttattatacat---gttctgggatacatatgcagaacgtgcaggtttgttacataggtatatacgtgccatggtggtttgctgcacccatcaatctgtcatctacactaggtatttctcctaatgctatccctcccctagtcccccaagccctgacaggccccaatgtgtgatgtccccctccctgtgtccatgtgttctcattgtt--------------------caactcccacttatgagtaagaacatgtggtgtttggttttctgttcttgtgttagtttgctgagaatgatggtttccagcttcatccatatccctgcaaaggacatgaactcat-cttttttatgcctgcatagtattccatggtatatatgtgccatattttctttatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30612257 447 + 173848474 CTAAGTCCTtttc----tctttt--------------tttattatacat---gttctgggatacatatgcagaacgtgcaggtttgttacataggtatatacgtgccatggtggtttgctgcacccatcaatctgtcatctacactaggtatttctcctaatgctatccctcccctagtcccccaagccctgacaggccccaatgtgtgatgtccccctccctgtgtccatgtgttctcattgtt--------------------caactcccacttatgagtaagaacatgtggtgtttggttttctgttcttgtgttagtttgctgagaatgatggtttccagcttcatccatatccctgcaaaggacatgaactcat-cttttttatgcctgcatagtattccatggtatatatgtgccatattttctttatccagtctatcactgatggacatttgggttggttccaagtctttgctattgtgaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     319962 446 +   2037526 ctaagtCCTtttc----tctttt--------------tttattatactt---gttct-ggatacatatgcagaacgtgcaggtttgttacataggtaagtacgtgccatggtggtttgctgcacccatcaatccgtcatctacattaggtatttctcctaatgctatccctcccctagtcccccaagccctgacaggccccgatgtgtgatgttcccctccctgtgtccatgtgttctcattgtt--------------------caactcccacttatgagtaagaacatgtggtgtttggttttctgttcttgtgttagtttgctgagaatgatggtttccagcttcatccatatccctgcaaaggacatgaactcat-cttttttatgcctgcatagtattccatggcatatatgtgccatattttctttatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74986428 451 + 122973662 ttaagtCCTTTTCtttttttttt--------------tttattatactttgagttctgggatacatgcgcagaatgtgcag----gttacataggtatatacatgccatgggggtttgctgcacccataaacccgtcatctacattaggtatttctcctaatgctatccctcccctagccccccatgccctgacaggccctgatgtgtgatgttcccctccctgtgtccatgtgttctcattgct--------------------caactcccacttatgagtaagaacatgcggtgtttggttttctgttcttgtgttagtttgctgagaatgatggtttccagcttcatccatatccctgcaaaggacatggactcatccttttttatgcctgcatagtattccatggtgtatatgtgccacattgtctttatccagtctatcattgatgggcatttgggttggttccaagtctttgctatcgtgaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30864605 465 + 172585720 ctaagtCTTCTTC----TTTTATTAAAAAAAAAAAATTttattatgttttaagttctgggatacatgtgcagaacatgcaggtttgttacacaggtatacacgggccatggtggtttgccgtacccatcaacccatcatctacattagatatttctcctaatgctatcattcccctagccccacatgacctgacaggccctgatgtgtgatgttcccctccctgtgtccatgtgctctcattgtt--------------------caactcccacttacaagtgagaacatgtggtgtttggttttctattcttgtgttagtttgttgagaatgatggtttccagcttcattcatgtccctgcaaaggacatgaactcatccttttttatggctgcatagtattccatggtgtatatgtgccacgttttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgctattgtgaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30154064 462 - 170955103 ctaagtCTTCTTC----TTTTATAAAAAAAAAAAa---ttattatgttttaagttctgggatacatgtgcagaacatgcaggtttgttacacaggtatacacgggccatggtggtttgccgtacccatcaacccatcatctacattagatatttctcctaatgctatccttcctctagccccccatgacctgacaggccctgatgtgtgatgttcccctccctgtgtccatgtgctctcattgtt--------------------caactcccacttacaagtgagaacatgtggtgtttggttttctattcttgtgttagtttgttgagaatgatggtttccagcttcattcatgtccctgcaaaggacatgaactcatccttttttatggcttcatagtattctatggtgtatatgtgccacgttttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgctattgtgaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     403294 465 +   1495729 CTAAGTCTTCTTC----TTTTATAAAAAAAAAAAAAATttattatgttttaagttctgggatacatgtgcagaacatgcaggtttgttacacaggtatacacgggccatggtggtttgccgtacccatcaacccatcatctacattagatatttctcctaatgctatccttcccctagccccccatgacctgacaggccctgatgtgtgatgttcccctccctgtgtccatgtgctctcattgtt--------------------caactcccacttacaagtgagaacatgtggtgtttggttttctattcttgtgttagtttgttgagaatgatggtttccagcttcattcatgtccctgcaaaggacatgaactcatccttttttatggcttcatagtattccatggtgtatatgtgccacgttttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgctattgtgaa
i macNem1.NW_012012100v1   C 0 M 691
s cerAty1.NW_012002535v1     506747 461 -    863181 CTAAGTCTTCTTC----TTTTAT----AAAAAAAAtttttattatgttttaagttctgggatacatgtgcaaaacatgcaggttcgttacacaggtatacacgggccatggtggtttgccgtacctatcaacccatcatctacattagatatttctcctaatgctatccttcccctagccccccatgacctgacaggccctgatgtgtgatgttaccctccctgtgtccatgtgctctcattgtt--------------------caactcccacttacaagtgagaacatgtggtgtttggttttctattcttgtgttagtttgttgagaatgatggtttccagcttcattcatgtccctgcaaaggacatgaactcatccttttttatggctgcatagtattccatggtgtatatgtgacacgttttctttatccagtctatcattgacaggcatttgggttggttccaagtctttgctattgtgaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29653604 483 -  71996105 CTAAGTCTTCTTC----TTTTAT--AAAAAAAAAAATTttattatgttttaagttctgggatacatgtgcagaacatgcaggtttgttacacaggtatacacgggccatggtggtttgccgtacccatcaacccatcatctacattagatatttctcctaatgctatccttcccctagcctcccatgacctgacaggccctgatgtgtgatgttcccctccctgtgtctatgtgctctcattgttcagagagtgtggggacaaaacaactcccacttacaagtgagaacatgtggtgtttggttttctattcttgtgttagtttgttgagaatgatggtttccagcttcattcatgtccctgcaaaggacatgaactcatccttttttatggctgcatagtattccatggtgtatatgtgccacattttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgctattgtgaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     386435 461 -    735854 CTAAGTCTTCTTC----TTTTAT----AAAAAAAATTTttattatgttttaagttctgggatacatgtgcagaacatgcaggttcgttacacaggtatacacgggccatggtggtttgccgtacccatcaacccatcatctacattagatatttctcctaatgctatccttcccctagccccccatgacctgacaggccctgatgtgtgatgttaccctccctgtgtccatgtgctctcattgtt--------------------caactcccacttacaagtgagaacatgtggtgtttggttttctattcttgtgttagtttgttgagaatgatggtttccagcttcattcatgtccctgcaaaggacatgaactcatccttttttatggctgcatagtattccatggtgtatatgtgacacgttttctttatccagtctatcattgacaggcatttgggttggttccaagtctttgctattgtgaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     291949 461 -   1829203 ctaagtCTTCTTC----TTTTAT----AAAAAAGttttttattatgctttaagttctgggatacacatgcagaacatgcaggtttgttacataggtatacacgggccatggtggtttgccacacccatcaacccatcatctacattagatatttctcctaatgctatccttcccctagccccccatgacctgacaggtcctgatgtgtgatgttcccctccctgtgtccatgtgctctcattgtt--------------------caactcccacttacaagtgagaacatgtggtgtttggttttctattcttgtgttagtttgctgagaatgatggtttccagctttattcatgtccctgcaaaggacatgaactcatcctttttaatggctgcatagtattccatggtgtatatgtgccatgttttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgctattgtgaa
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615  24 -  94987271 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897  47 +  26524999 I
e saiBol1.JH378341           298139 313 +    515838 I
e otoGar3.GL873550           343017   0 +  18854210 C
e aotNan1.NW_018496901v1     108043 316 -    486031 I
e cebCap1.NW_016107755v1     926764 2616 -   1771730 I
e calJac3.chr4             30492049   0 + 171630274 C

a score=285251.000000
s hg38.chr6_GL000254v2_alt  1509617 62 +   4827813 cagtgctgcaataaacatatgtgtgcatgtgtctttacagtaggataatttataatcctctg
s panTro5.chr6             30378379 62 + 175400573 cagtgctgcaataaacatatgtgtgcatgtgtctttacagtagaataatttataatcctctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30612704 62 + 173848474 cagtgctgcaataaacatatgtgtgcatgtgtctttacagtagaataatttataatcctctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     320408 62 +   2037526 cagtgctgcaataaacatatgtgtgcatgtgtctttacagtagaataatttttaatcctctg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74986879 62 + 122973662 cagtgctgcaataaacatatgtgtgcatgtgtctttatagtagaataatttataatcctttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30865070 62 + 172585720 cagtgctgcaataaacatacatatgcatgtgtctttatagcagcatgatttataatcctttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30154526 62 - 170955103 cagtgctgcaataaacatacatatgcatgtgtctttatagcagcatgatttataatcctttg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     507208 62 -    863181 cagtgctgcaataaacatacgtatgcatgtgtctttatagcagcatgatttataatcctttg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29654087 62 -  71996105 cagtgctgcaataaacatacatatgcatgtgtctttatagcagcatgatttataatcctttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     386896 62 -    735854 cagtgctgcaataaacatacgtgtgcatgtgtctttatagtagcatgatttataatcctttg
i manLeu1.NW_012107142v1   C 0 I 114
s colAng1.NW_012115577v1     292410 62 -   1829203 cagtgctgcaataaacatacgtatgcacgtgtctttatagcagcatgatttataatcctttg
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615 24 -  94987271 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897 47 +  26524999 I
e saiBol1.JH378341           298139 313 +    515838 I
e otoGar3.GL873550           343017  0 +  18854210 C
e aotNan1.NW_018496901v1     108043 316 -    486031 I
e cebCap1.NW_016107755v1     926764 2616 -   1771730 I
e calJac3.chr4             30492049  0 + 171630274 C
e macNem1.NW_012012100v1     403759 691 +   1495729 M

a score=4058776.000000
s hg38.chr6_GL000254v2_alt  1509679 875 +   4827813 ggtatatacccagtaatgggattgccaggtcaaatggtatttctcattctagattcttgaggagttgccacactgtcttccacaacggttgaactaatttacactcccaccaacattgtaaaagcattcttatttctccacatcatctccagcatctgttatttcctgactttttaatgatcaccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctaatgaccagtgatgatgagcttcttttcataggtttg-ttggccacataaatgtcttcttttgagaagtgtctgttcatatccttcacctactttttgatggggctgtttgtttttttcttgtaaatttgtttaagttctttgtagattttggatattagccctttgtcagatggatagattgcaa--aatgtttctcccattctgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttcatttaattagataccatttgtcaatttaggcttttgttgccattgcttttggtgttctagtcatgaagtctttgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggttttt-atggttttaggtcttacgtttaagtctttaatccatcttgagttaatttttatttcaggtgtaaggaaggggtccagtttcagttttctgcatatggctagccagttttcccaacaccatttattaaatagggaatcctttccccattgcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggtgttatttctgaggcccttcttctgttccatttgtctatatgtctgttttgataccag
s panTro5.chr6             30378441 872 + 175400573 ggtatatacccagtaatgggattgccaggtcaaatggtatttctcgttctagattcttgaggagtcgccacactgtcttccacaatggttgaactaatctacactcccaccaacattgtaaaagcattcctatttctccacatcatctccagcatctattatttcctgactttttaatgatcaccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctaatgaccagtgatgacgagcttcttttcataggt----ttggccacataaatgtcttcttttgagaagtgtctgttcatatccttcacctactttttgatggggctgtttgtttttttcttgtaaatttgtttaagttctttgtagattttggatattagccctttgtcagatggatagattgcaa--aatgtttctcccattctgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttcatttaattagatcccatttgtcaatttaggcttttgttgccattgcttttggtgttctagtcatgaagtctttgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggttttt-atggttttaggtcttacatttaagtctttaatccatcttgagttaatttttatttcaggtgtaaggaaggggtccagtttcagttttctgcatatggctagccagttttcccaacaccatttattaaatagggaatcctttccccgttgcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggtgttatttctgaggcccttcttctgttctgtttgtctatatgtctgttttgataccag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30612766 872 + 173848474 ggtatatacccagtaatgggattgccaggtcaaatggtatttctcgttctagattcttgaggagtcgccacactgtcttccacaatggttgaactaatctacactcccaccaacattgtaaaagcattcctatttctccacatcatctccagcatctgttatttcctgactttttaatgatcaccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctaatgaccagtgatgacaagcttcttttcataggt----ttggccacataaatgtcttcttttgagaagtgtctgttcatatccttcacctactttttgatggggctgtttgtttttttcttgtaaatttgtttaagttctttgtagattttggatattagccctttgtcagatggatagattgcaa--aatgtttctcccattctgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttcatttaattagatcccatttgtcaatttaggcttttgttgccattgcttttggtgttctagtcatgaagtctttgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggttttt-atggttttaggtcttacatttaagtctttaatccatcttgagttaatttttatttcaggtgtaaggaaggggtccagtttcagttttctgcatatggctagccagttttcccaacaccatttattaaatagggaatcctttccccgttgcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggtgttatttctgaggcccttcttctgttctgtttgtctatatgtctgttttgataccag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     320470 874 +   2037526 ggtatatacccagtaatgggattgccaggtcaaatggtatttctcgttctagattcttgaggagtcgccacactgtcttccacagtggttgaactaatctacactcccaccaacattgtaaaagcattcctatttctccacatcatctccagcatctgttatttcctgactttttaatgatcaccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctaatgaccagtgatgacaagcttcttttcataggtttg-ttggccacataaatgtcttcttttgagaagtgtctgttcatatccttcacctactttttgatggggctctttgtttttttcttgcaaatttgtttaagttttttgtagattttggatattagccctttgtcagatggatagattgcaa--aatgtttctctcattctgtaggttgcctgttcactctgatgatagtttcttttgctgtgcagaagctctttcatttaattagatcccatttgtcaatttaggcttttgttgccattgcttttggtgttctagtcatgaagtctttgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggttttt-atggttttaggtctcacgtttaagtctttaatccatcttgagttaatttttatttcaggtgtaaggaaggggtccagtttcagttttctgcatatggctagccagttttcccaacaccatttattaaatagggaatcctttcccca-tgcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggtgttatttctgaggcccttcttctgttccatttgtctatatgtctgttttgataccag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74986941 865 + 122973662 ggtatacacccagtaatgggattgccgggtaaaatggtatttctcgttctagattcttgaggaatcaccacactgtattccacaatggttgaactaatttacactcccaccaacagtgtaaaagcattcctatttctccacatcatctccagcatctgttatttcctgactttttaatgatcaccattctaactggcatgagatggtatctcattgtggttttgatttgcatttctctagtgaccagtgacgatgagcttcttttcatatgtttg-ttggctgcataaatgtcttcttttgggaagtgtctgttcatatccttca-ctactttttgatggggttgtttgtttttttcttgtcaatttgtttaagttctttgtagattttggatattagccctttgtcagatggatagattgcaa--aatttttctctcattctgtaggtt-cctgttcactctgatgatggtttcttttgctgtgcagaagctctttcatttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtctttgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggttttt-atggttttaggtcttacatttaagtctttaatccatcttgagttaatttttatatcaggtgtaaggaaggggtccagtttcagttttttgcatatggctagccagttttcccagcaccatttattaaatatggaatcctttccccattgcttgtttttgtcaggtttgtcaaagatcagatagttgtagatgtgtggcattatttctgaggcccctgttctgt--------tctatatatctgttttggtaccag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30865132 871 + 172585720 ggtatatacccagtaatgggattgctgggtcaaatggcatttctggttctagatccttgaggagtcgctacactgtcttccacaacggttgaactaatttacactcccaccaacagtgtaaaagcattcctatttctccacttcgtctccagaatttgttgtttcctgactttttaatgatcgccattctaactgacatgagatggtatttgattgtggttttgatttacatttctgtaatgaccagtgatgatgagctt-tttttgtgtgtttg-ttggccacataaatgtcttcttttgagaagtatctgttcatatccttcacccactttttgatggggttgtttgtttttttcttgcaaatttgtttaagttctttgtagattctagatattagccatttgtcagatggatagattgcaatttttttttctcccattctgtaggctgcctgttcactctgatgatagttt-ttttgctgtgcagaagctctttagt----ttagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtctttgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggttttt-atggttttaggtcttacatttaagtctttaatccatcttgagttaatttttatatcaggtgtaaggaaggagtccagtttcagttttctgcatatagctagccagttttcacaacacaatttattaaacagggaatcctttccccattgcttgtttttgtcaggtttgtcaaagattagatggttgtagatgtgtggagttatttctgaggcccctattctgttccattggtctatatgtctattttggtaccag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30154588 871 - 170955103 ggtatatacccagtaatgggattgctgggtcaaatggcatttctggttctagatccttgaggagtcgctacactgtcttccacaacggttgaactaatttacactcccaccaacagtgtaaaagcatttctatttctccacttcgtctccagaatttgttgtttcctgactttttaatgatcgccattctaactgacatgagatggtatttgattgtggttttgatttacatttctctaatgaccagtgatgatgagctt-tttgtgtgtgtttg-ttggccgcataaatgtcttcttttgagaagtatctgttcatatccttcacccactttttgatggggttgtttgtttttttcttgcaaatttgtttaagttctttgtagattctagatattagccatttgtcagatggatagattgcaatttttttttctcccattctgtaggctgcctgttcactctgatgatagttt-ttttgctgtgcagaagctctttagt----ttagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtctttgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggttttt-atggttttaggtcttacatttaagtctttaatccatcttgagttaatttttatatcaggtgtaaggaaggagtccagttgcagttttctgcatatagctagccagttttcgcaacacaatttattaaacagggaatcctttccccattgcttgtttttgtcaggtttgtcaaagattagatggttgtagatgtgtggagttatttctgaggcccctattctgttccattggtctatatgtctattttggtaccag
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     507270 870 -    863181 ggtatatacccagtaatgggattgctggatcaaatggcatttctggtcctagatccttgaggagtcgctacactgtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagcatttctatttctccacttcgtctccagaatttgttgtttcctgactttttaatgatcgccattctaactgacatgagatggtatttgattgtggttttgatttacatttctctaatgaccagtgatgatgagctt-tttttgtgtgtttg-ttggccgcataaatgtcttcttttgagaagtatctgttcatatccttcacccactttttgatggggttgtttgtttttttcttgcaaatttgtttaagttctttgtagattctagatattagccatttgtcatttggatagattgcaa-ttttttttctcccattctgtaggctgcctgttcactctgatgatagttt-ttttgctgtgcagaagctctttagt----ttagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtctttgcccatgcctacgtcctgaatggtattgcctagattttcttctagggttttt-atggttttaggtcttacatttaagtctttaatccatcttgagttaatttttatatcaggtgtaaggaaggagtccagtttcagttttctgcatatagctagccagttttcgcaacacaatttattaaacagggaatcctttccccattgcttgtttttgtcaggtttgtcaaagattagatggttgtagatgtgtggagttatttctgaggcccctattctgttccattggtctatatgtctattttggtaccag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29654149 871 -  71996105 ggtatatacccagtaatgggattgctgggtcaaatggcatttctggttctagatccttgaggagtcgctacactgtcttccacaacggttgaactaatttacactcccaccaacagtgtaaaagcattcctatttctccacttcgtctccagaatttgttgtttcctgactttttaatgatcgccattctaactgacatgagatggtatttgattgtggttttgatttacatttctctaatgaccaatgatgatgagctt-tttttgtgtgtttg-ttggccgcataaatgtcttcttttgagaagtatctgttcatatccttcacccactttttgatggggttgtttgtttttttcttgcaaatttgtttaagttctttgtagattctagatattagccatttgtcagatggatagattgcaatttttttttctcccattctgtaggctgcctgttcactctgatggtagttt-ttttgctgtgcagaagctctttagt----ttagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtctttgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggttttt-atggttttaggtcttacatttaagtctttaatccatcttgagttaatttttatatcaggtgtaaggaaggagtccagtttcagttttctgcatatagctagccagttttcgcaacacagtttattaaacagggaatcctttccccattgcttgtttttgtcaggtttgtcaaagattagatggttgtagatgtgtggagttatttctgaggcccctattctgttccattggtctatatgtctattttggtaccag
i chlSab2.chr17            C 0 I 17
s manLeu1.NW_012107142v1     387072 871 -    735854 ggtatatacccagtaatgggattgctggatcaaatggcatttctggtcctagatccttgaggagtcgctacactgtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagcatttctatttctccacttcgtctccagaatttgttgtttcctgactttttaatgatcgccattctaactgacatgagatggtatttgattgtggttttgatttacatttctctaatgaccagtgatgatgagctt-tttttgtgtgtttg-ttggccgcataaatgtcttcttttgagaagtatctgttcatatccttcacccactttttgatggggttgtttgtttttttcttgcaaatttgtttaagttctttgtagattctagatattagccatttgtcatttggatagattgcaa-ttttttttctcccattctgtaggctgcctgttcactctgatgatagttt-ttttgctgtgcagaagctctttagt----ttagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtctttgcccatgcctacgtcctgaatggtattgcctagattttcttctagggtttttaatggttttaggtcttacatttaagtctttaatccatcttgagttaatttttatatcaggtgtaaggaaggagtccagtttcagttttctgcatatagctagccagttttcgcaacacaatttattaaacagggaatcctttccccattgcttgtttttgtcaggtttgtcaaagattagatggttgtagatgtgtggagttatttctgaggcccctattctgttccattggtctatatgtctattttggtaccag
i manLeu1.NW_012107142v1   I 114 I 17
s colAng1.NW_012115577v1     292472 871 -   1829203 ggtatatacccagtaatgggattgctgggtcaaatggtatttctggttctagatccttgaggagtcgctacactgtcttccacaactgttgaactaatttacactcccaccaacagtgtaaaagcgttcctgtttctccacttcgtctccagaatttgttgtttcctgactttttaatgatcgccattctaactgacatgagatggtatttgattgtggttttgatttacatttctctaatgaccagtgatgatgagctt-tttttgtgtgtttgtttggccacatgaatgtcttcttttgagaagtatctgttcatatccttcacccactttttgatggggttgtttgtttttttcttgcaaatttctttaagttctttgtagattctagatattagccatttgtcagatggatagattgcaa-ttttttttctcccattctgtaggctgcctgttcactctgatgacagttt-ttttgctgtgcagaagctctttagt----ttagatcccatttatcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtctttgcccatgcctatgccctgaatggtattgcctaggttttcttctagggttttt-atggttttaggtcttgtatttaagtctttaatccatcttgagttaatttttatatcaggtgtaaggaaggagtccagtttcagttttctgcatatagctagccagttttcgcaacacaatttattaaacagggaatcctttccccattgcttgtttttgtcaggtttgtcaaagattagatggttgtagatgtgtggagttatttctgaggcccctatcctgttccattggtctatatgtctatttgggtaccag
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615  24 -  94987271 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897  47 +  26524999 I
e saiBol1.JH378341           298139 313 +    515838 I
e otoGar3.GL873550           343017   0 +  18854210 C
e aotNan1.NW_018496901v1     108043 316 -    486031 I
e cebCap1.NW_016107755v1     926764 2616 -   1771730 I
e calJac3.chr4             30492049   0 + 171630274 C
e macNem1.NW_012012100v1     403759 691 +   1495729 M

a score=6092.000000
s hg38.chr6_GL000254v2_alt  1510554 17 +   4827813 acatatttgatatcata
s panTro5.chr6             30379313 17 + 175400573 taccatgctgttttggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30613638 17 + 173848474 taccatgctgttttggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     321344 17 +   2037526 taccatgctgttttggt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74987806 17 + 122973662 taccatgctgttttggt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30866003  7 + 172585720 taccatg----------
i rheMac8.chr4             C 0 I 10
s macFas5.chr4             30155459  7 - 170955103 taccatg----------
i macFas5.chr4             C 0 I 10
s cerAty1.NW_012002535v1     508140  7 -    863181 taccatg----------
i cerAty1.NW_012002535v1   C 0 I 10
s colAng1.NW_012115577v1     293343  7 -   1829203 taccatg----------
i colAng1.NW_012115577v1   C 0 I 10
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615 24 -  94987271 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897 47 +  26524999 I
e saiBol1.JH378341           298139 313 +    515838 I
e otoGar3.GL873550           343017  0 +  18854210 C
e aotNan1.NW_018496901v1     108043 316 -    486031 I
e cebCap1.NW_016107755v1     926764 2616 -   1771730 I
e calJac3.chr4             30492049  0 + 171630274 C
e manLeu1.NW_012107142v1     387943 17 -    735854 I
e chlSab2.chr17            29655020 17 -  71996105 I
e macNem1.NW_012012100v1     403759 691 +   1495729 M

a score=708864.000000
s hg38.chr6_GL000254v2_alt  1510571 145 +   4827813 tactacagccttgtagtatagtttgaagtcaggtagcatgatgcctccagcttcgttctttttgcttaagattgtattggctatgtgggctctttattggttccatatgaaatataaagtag-ttttttctaattctgtgaagaaa
s panTro5.chr6             30379330 146 + 175400573 tactgtagccttgtagtatagtttgaagtcaggtagcatgatgcctccagcttcattctttttgcttaagattgtattggctatgtgggctcttttttggttccatatgaaatataaagtagtttttttctaattctgtgaagaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30613655 146 + 173848474 tactgtagccttgtagtatagtttgaagtcaggtagcatgatgcctccagcttcattctttttgcttaagattgtattggctatgtgggctcttttttggttccatatgaaatataaagtagtttttttctaattctgtgaagaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     321361 146 +   2037526 tactgtagccttgtagtatagtttgaagtcaggtagcatgatgcctccagcttcattctttttgcttaagattgtattggctatgtgggctcttttttggttccatatgaaatataaagtagtttttttctaattctgtgaagaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74987823 145 + 122973662 tactgtagccttgtagtacagtttgaagtcaggtagcatgatgcctccagctttgttctttttgcttaagattgtcttggctatctgggctcttttttggttccacatgaaatataaagtag-ttttttctaattctgtgaagaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30866020 145 + 172585720 tattgtagccttgtagtatagtttgaagtcaggtagcatgatgcctccagctttgttctttttgcttaggattgtcttggctatgtgggctcttttttggttccatatgaaatataaagtag-ttttttctaattctgtgaagaaa
i rheMac8.chr4             I 10 C 0
s macFas5.chr4             30155476 145 - 170955103 tattgtagccttgtagtatagtttgaagtcaggtagcatgatgcctccagctttgttctttttgcttaggattgtcttggctatgtgggctcttttttggttccatatgaaatataaagtag-ttttttctaattctgtgaagaaa
i macFas5.chr4             I 10 C 0
s cerAty1.NW_012002535v1     508157 145 -    863181 tattgtagccttgtagtatagtttgaagtcaggtagcatgatgcctccagctttgttctttttgcttaggattgtcttggctatgtgggctcttttttggttccatatgaaatataaagtag-ttttttctaattctgtgaagaaa
i cerAty1.NW_012002535v1   I 10 C 0
s chlSab2.chr17            29655037 145 -  71996105 tattgtagccttgtagtatagtttgaagtcaggtagcatgatgcctccagctttgttctttttgcttaggattgtcttggctatgtgggctcttttttggctccatatgaaatataaagtag-ttttttctaattctgtgaagaaa
i chlSab2.chr17            I 17 C 0
s manLeu1.NW_012107142v1     387960 145 -    735854 tattgtagccttgtagtatagtttgaagtcaggtagcatgatgcctccagttttgttctttttgcttaggattgtcttggctatgtgggctcttttttggttccatatgaaatataaagtag-ttttttctaattctgtgaagaaa
i manLeu1.NW_012107142v1   I 17 C 0
s colAng1.NW_012115577v1     293360 145 -   1829203 tattgtagccttgtagtatagtttgaagtcaggtagcatgatgcctccagctttgttctttttgcttaggattgtcttggctatgtgggctcttttttggttccatatgaaatataaagtag-ttttttctaattctgtgaagaaa
i colAng1.NW_012115577v1   I 10 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615  24 -  94987271 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897  47 +  26524999 I
e saiBol1.JH378341           298139 313 +    515838 I
e otoGar3.GL873550           343017   0 +  18854210 C
e aotNan1.NW_018496901v1     108043 316 -    486031 I
e cebCap1.NW_016107755v1     926764 2616 -   1771730 I
e calJac3.chr4             30492049   0 + 171630274 C
e macNem1.NW_012012100v1     403759 691 +   1495729 M

a score=1048135.000000
s hg38.chr6_GL000254v2_alt  1510716 182 +   4827813 gtcaatggtagcttgatagggataacactgaatctataaattactttgggcagtatggccattttcacaata-ttgattcttcctatccatgagcatggaatg--tttttccatttgtctgtgttctctctgatttccttgagcagtggtttgtagttctccttgaagaggtccttcacatcTGT
s panTro5.chr6             30379476 182 + 175400573 gtcaatggtagcttgatagggataacactgaatctataaattactttgggcagtatggccattttcacaata-ttgattcttcctatccatgagcatggaatg--tttttccatttgtttgtgttctctctgatttccttgagcagtggtttgtagttctccttaaagaggtccttcacatcTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30613801 182 + 173848474 gtcaatggtagcttgatagggataacactgaatctataaattactttgggcagtatggccattttcacaata-ttgattcttcctatccatgagcatggaatg--tttttccatttgtttgtgttctctctgatttccttgagcagtggtttgtagttctccttaaagaggtccttcacatcTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     321507 183 +   2037526 gtcaatggtagcttgatagggataacactgaatctataaattactttgggcagtatggccattttcacaata-ttgattcgtcctatccatgagcatggaatg-ttttttccatttgtttgtgttctctctgatttccttgagcagtggtttgtagttctccttgaagaggtccttcacatcTGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74987968 183 + 122973662 gtcagtggtagcttgatggggataacattgaatctataaattactttgggcagtatggccattttcaaaatatttgattcttcctatccatgagcatggaatg--tttttccatttgtttgtgtcctctctgatttccttgagcagtggtttgtagttctccttgaagaggtccttcacatcTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30866165 184 + 172585720 gtcaatggtagcttaatggggatagcattgaatctataaattactttgggcagtatggccattttcacaata-ttgattcttcctatccatgaacatggaatgtttttttccatttgtttgtgtcctctctgatttccttgagcagtggtttgtagttctccttgaagaggtccttcacatcTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30155621 184 - 170955103 gtcaatggtagcttaatggggatagcattgaatctataaattactttgggcagtatggccattttcacaata-ttgattcttcctatccatgaacatggaatgtttttttccatttgtttgtgtcctctctgatttccttgagcagtggtttgtagttctccttgaagaggtccttcacatcTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     404450 183 +   1495729 gtcaatggtagcttaatggggatagcattgaatctataaattactttgggcagtatggccattttcacaata-ttgattcttcctatccatgaacatggaatg-ttttttccatttgtttgtgtcctctctgatttccttgagcagtggtttgtagttctccttgaagaggtccttcacatcTGT
i macNem1.NW_012012100v1   M 691 C 0
s cerAty1.NW_012002535v1     508302 183 -    863181 gtcaatggtagcttaatgcggatagcattgaatctataaattactttgggcagtatggccattttcacaata-ttgattcttcctatccatgaacatggaata-ttttttccatttgtttgtgtcctctctgatttccttgagcagtggtttgtagttctccttgaagaggtccttcacatcTGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29655182 183 -  71996105 gtcaatggtagcttaatggggatagcattgaatctataaattactttgggcagtatggccattttcacaata-ttgattcttcctatccatgaacatggaagg-ttttttccatttgtttgtgtcctctctgatttccttgagcagtggtttgtagttgtccttgaagaggtccttcacatcTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     388105 183 -    735854 gtcaatggtagcttaatgcggatagcattgaatctataaattactttgggcagtatggccattttcacaata-ttgattcttcctatccatgaacatggaata-ttttttccatttgtttgtgtcctctctgatttccttgagcagtggtttgtagttctccttgaagaggtccttcacatcTGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     293505 175 -   1829203 gtcaatggtagcttaatggggatagcattgaatctataaattactttg--------ggccattttcacaata-ttgattcttcctatccatgaacatggaatg-ttttttccatttgtttgtgccctctctgatttccttgagcagtggtttgtagctctccttgaagaggtccttcacatcTGT
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615  24 -  94987271 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897  47 +  26524999 I
e saiBol1.JH378341           298139 313 +    515838 I
e otoGar3.GL873550           343017   0 +  18854210 C
e aotNan1.NW_018496901v1     108043 316 -    486031 I
e cebCap1.NW_016107755v1     926764 2616 -   1771730 I
e calJac3.chr4             30492049   0 + 171630274 C

a score=21000.000000
s hg38.chr6_GL000254v2_alt  1510898 2 +   4827813 GG
s panTro5.chr6             30379658 2 + 175400573 GG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30613983 2 + 173848474 GG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     321690 2 +   2037526 GG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74988151 2 + 122973662 GG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30866349 2 + 172585720 GG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30155805 2 - 170955103 GG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     404633 2 +   1495729 GG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     508485 2 -    863181 GG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29655365 2 -  71996105 GG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     388288 2 -    735854 GG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     293680 2 -   1829203 GG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30492049 2 + 171630274 GG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           298452 2 +    515838 gg
i saiBol1.JH378341         I 313 C 0
s aotNan1.NW_018496901v1     108359 2 -    486031 gg
i aotNan1.NW_018496901v1   I 316 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615 24 -  94987271 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897 47 +  26524999 I
e otoGar3.GL873550           343017 0 +  18854210 C
e cebCap1.NW_016107755v1     926764 2616 -   1771730 I

a score=243120.000000
s hg38.chr6_GL000254v2_alt  1510900 22 +   4827813 GCACTAAGTCCTTTtctctccc
s panTro5.chr6             30379660 22 + 175400573 GCACTAAGtccttttctctccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30613985 22 + 173848474 GCACTAAGTCCTTTtctctccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     321692 22 +   2037526 GCACTAAGtcctcttctctccc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74988153 22 + 122973662 GCACTAAGTCCTTTtctctccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30866351 22 + 172585720 GCACTAAGTCCTTTtctctccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30155807 22 - 170955103 GCACTAAGTCCTTTtctctccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     404635 22 +   1495729 GCACTAAGTCCTTTtctctccc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     508487 22 -    863181 GCACTAAGTCCTTTtctctccc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29655367 22 -  71996105 GCACTAAGTCCTTTtctctccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     388290 22 -    735854 GCACTAAGTCCTTTtctctccc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     293682 22 -   1829203 GCACTAAGTCCTTTtctctccc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30492051 22 + 171630274 GCACTAAGTCCTTTtctctccc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           298454 22 +    515838 gtactaagcccttttctctccc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     929380 22 -   1771730 GCACTAAGTCGTTTtctctccc
i cebCap1.NW_016107755v1   I 2616 C 0
s aotNan1.NW_018496901v1     108361 22 -    486031 gcactaagtccttttctctccc
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615 24 -  94987271 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897 47 +  26524999 I
e otoGar3.GL873550           343017  0 +  18854210 C

a score=951686.000000
s hg38.chr6_GL000254v2_alt  1510922 90 +   4827813 tctctattcaactggaaat-----ttatctttcaaggcacattgtaaatgttttctgctttccaaaccttcccttaggcctacaggcagagctga
s panTro5.chr6             30379682 90 + 175400573 tctctattcaactggaaat-----ttatctttcaaggcacattgtaaatgttttctgctttccaaaccttcccttaggcctacaggcagagctga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30614007 90 + 173848474 tctctattcaactggaaat-----ttatctttcaaggcacattgtaaatgttttctgctttccaaaccttcccttaggcctacaggcagagctga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     321714 90 +   2037526 tctctattcaactggaaat-----ttatctttcaaggcacattgtaaatgttttctgctttccaaaccttcccttaggcctacaggcagagctga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74988175 90 + 122973662 tctctattcaactggaaat-----ttacctttcaaggcacattgtaaatgttttatgctttccaaaccttcccttaggcctacaggcagagctga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30866373 95 + 172585720 tgtctattcaactggaaatttatcttatctttcaaggtgcactgtaaatgttttctgctttccaaaccttcccttaggactacaggcagagctgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30155829 95 - 170955103 tgtctattcaactggaaatttatcttatctttcaaggtgcactgtaaatgttttctgctttccaaaccttcccttaggactacaggcagagctgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     404657 95 +   1495729 tgtctattcaactggaaatttatcttatctttcaaggtgcactgtaaatgttttctgctttccaaaccttcccttaggactacaggcagagcttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     508509 95 -    863181 tgtctattcaactggaaatttatcttatctttcaaggtgcactgtaaatgttttctgctttccaaaccttcccttaggcctacaggcagagctgt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29655389 95 -  71996105 tgtctattcaactggaaatttatcttatctttcaaggtgcactgtaaatgttttctgctttccaaaccttcccttaggactacaggcagagctgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     388312 95 -    735854 tgtctattcaactggaaatttatcttatctttcaaggtgcactgtaaatgttttctgctttccaaaccttcccttaggcctacaggcagagctgt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     293704 95 -   1829203 tgtctattcaactggaaatttatcttatctttcaaggtgcactgtaaatgttttctgctttccaaaacttcccttaggcctacaggcagagctgt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30492073 90 + 171630274 tctctattcaactggaaat-----gtatctttcaaggcacactgtaaatgttttctgctttctaaaccttcccttaggcctacaggcagagctgt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           298476 90 +    515838 tctctattcaactggaaat-----atatctttcaaggcgcactgcaaatgttttctgctttctaaaccttcccttaggcctacaggcagagctat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     929402 90 -   1771730 tctctattcaactggaaat-----gtatctttcaaggtgcactgtaaacgttttctgctttctaaaccttcccttaggcctacaggcagagctat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     108383 90 -    486031 tctctattcaatgggaaat-----atatctttcaaggcacactgtaaatgttttctgccttctaaaccttcccttaggcctacaggcagcgctgt
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           343017 80 +  18854210 ttTCTGGCCAACTGGAAAT-----CAATCTTTCAAGGCCCACTGTAAACGTGTTCTG----------GTTCCCTTAACCCTTCAGGCAGAACCAT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58120615 24 -  94987271 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897 47 +  26524999 I

a score=2077876.000000
s hg38.chr6_GL000254v2_alt  1511012 201 +   4827813 cctctgtgttccc-atctcactgtgtg----tacccctggactattgcat-ttatctatctgtattttaatcacttgacattgacttcttcctgagatggtgg--tctctttaggg-caaggactgggccttttccacctttgaacccctcagcactcaacagtgtgcccaggatgtgatagttaa----taattgtgagttgaatTATTAATT
s panTro5.chr6             30379772 201 + 175400573 cctctgtgttccc-atctcactgtgtg----tacccctggactattgcat-ttatctatctgtattttaatcacttgacattgacttcttcctgagatggtgg--tctctttaggg-caaggactgggccttttccacctttgaacccctcagcactcaacagtgtgcccaggatgtgatagttaa----taattgtgagttgaattattaatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30614097 201 + 173848474 cctctgtgttccc-atctcactgtgtg----tacccctggactattgcat-ttatctatctgtattttaatcacttgacattgacttcttcctgagatggtgg--tctctttaggg-caaggactgggccttttccacctttgaacccctcagcactcaacagtgtgcccaggatgtgatagttaa----taattgtgagttgaatTATTAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     321804 201 +   2037526 cctctgtgttccc-atctcactgtgtg----tacccctggactattgcat-ttatctatctgtattttaatcacttgacattgacttcttcctgagattgtgg--tctctttaggg-caaggactgggccttttccacctttgaacccctcagcactcaacggtgtgcccaggatgtgatagttaa----taattgtgagttgaattattaatt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74988265 202 + 122973662 cgtctgtgttcct-atctcactgtgtg----tacccctggactattgcat-ttatctatctgtattttaatcacttaacgttgacttcttcctgagatagtga--tctctttagggacaaggactgggccttttccacctttgaatccctcagcactcaacagtgtgccgaggatgtgacagttaa----taattgtgagttgaatTATTAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30866468 204 + 172585720 cctctgtgttccc-atcttactgtgtg----tacctctggactaccgcat-ttgtctatctgtattttagccactcgacactgacttcttcctgagatggtgatctctctttaggtacaaggactgggccttttccacctttgaatccctcaacacttaacagtgtgcccaggatgcgatagttaa----taattgtgagttgaattATTAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30155924 204 - 170955103 cctctgtgttccc-atcttactgtgtg----tacctctggactaccgcat-ttgtttgtctgtattttagccactcgacactgacttcttcctgagatggtgatctctctttaggtacaaggactgggccttttccacctttgaatccctcaacacttaacaGTGTGCCCAGGATGCGATAGTTAA----TAATTGTGAGTTGAATTATTAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     404752 204 +   1495729 cctctgtgttccc-atcttactgtgtg----tacctctggactactgcat-ttgtctatctgtattttagccactcgacactgacttcttcctgagatggtgatctctctttaggtacaaggactgggccttttccacctttgaatccctcaacacttaacagtgtgcccaggatgcgatagttaa----taattgtgagttgaatTATTAATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     508604 204 -    863181 cctctgtgttccc-atcttactgtgtg----tacctctggactactgcat-ttgtctgtctgtattttagccactcgacactgacttcttcctgagatggtgatctctctataggtacaaggactgggccttttccacctttgaatccctcagcacttaacagtgtgcccaggatgcgatagttaa----taattgtgagttgaatTATTAATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29655484 204 -  71996105 cctctgtgttccc-atcttactgtgtg----tacctctggactactgcat-ttgtctgtctgtattttagccactcgacactgacttcttcctgagatggtgatctctctttaggtacaaggactgggtcttttccacctttgaatccctcagcacttaacaGTGTGCCCAGGATGCGATAGTTAA----TAATTGTGAGTTGAATTATTAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     388407 204 -    735854 cctctgtgttccc-atcttactgtgtg----tacctctggactactgcat-ttgtctgtctgtattttagccactcgacactgacttcttcctgagatggtgatctctctataggtacaaggactgggccttttccacctttgaatccctcagcacttaacagtgtgcccaggatgcgatagttaa----taattgtgagttgaatTATTAATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     293799 204 -   1829203 cttctgtgttccc-atcttactgtgtg----tacctctggactactgcat-ttatctgtctgtattttagccacttgacactgacttcttcctgagatggtgatctctctttaggtacaaggactgggccttttccacctttgaatccctcagcacctaacaGTGTGCCCAAGATGTGATAGTTAA----TAATTGTGAGTTGAGTTATTAATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30492163 201 + 171630274 cttctgtgttccc-atctcactgtgtg----cacccctggactattgcat-ttatctgtctgcattttaatcacttgaaactgacttcttact-agatggtga--tctctttaggaacaaggactgggccttttccaccttcgaatccctcagcactcagcagtgtgctcaggatgtggtaattaa----tatttgtGAGTTGGATTATGAATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           298566 197 +    515838 cctctgtgttccc-gtctcactgtgtg----cacccctggactattgcat-ttatctgtctgtattttaatcacttgaaactgacttcttcct-agac-gtga--tctctttaggaacaaggactgggccttttccacctttgaatccgtcagcattcagcagtatgcccaggatgtggtaattaa-------ttgtgagttgaattatgaatT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     929492 201 -   1771730 cctctgtgttccc-atctcactatgtg----cacccctgaactactgcat-ttatctgtctgtattttaatcacttgaaactgacttattcct-agatagtga--tctctttaggaacaaggactgggccttttccaccttcgaattcctcagcactcagccgtgtgcccaggatgtggtaattaa----tatttgtgagttgaattatgaatT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     108473 200 -    486031 cctctgtgttcca-gtctcactgtgtg----catccctggactattgcat-ttatctatctgtattttaatcacttgaaactgacttcttcct-agatggtga--tctctttaggaacaaggactgggccttttccaccttcgaatccctcagcattgagcagtgtgcccaggatgtggtaattaa----cacttgtgag-tgaatTATGAATT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           343097 176 +  18854210 CC------TTCTG-ATCTCACTGTTCA----CACACTATGACTATTACAT-TTTTCTATCTATATTTTAATCACTCATAACAGACTTCCACCTAAGATGGAGA--TATCTTT------------------------ATCTTTGAATCCCTCAGCACTCAGTGGTGGGCCTGGAATGTGGTAGACAACTCACGTCTGTGAGTTGAATTATTAATG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58120639 205 -  94987271 CCTCTTTGCTCCTGGTTTCCCTGCGGGCACATACACCTTACTTACCACACACTTTCTATCTCCATAGT-GCCACCCAAC-CCAATTCTTGCCCTAAATGGTGA--TACAATGAAGGTCAAGGATTAGGACTCTTGTCAGTTTGAATCTCTCAGC-CTCGGTGGTGTGTCCACAACATAGCACACGG----TATTTGCCAGTGGGATTATTCACC
i mm10.chr17               I 24 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I
e canFam3.chr35            26358897  47 +  26524999 I

a score=208629.000000
s hg38.chr6_GL000254v2_alt  1511213 20 +   4827813 CAGTCACCTCTATCCAC---CCA
s panTro5.chr6             30379973 20 + 175400573 CAGTCACCTCTATCCAC---CCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30614298 20 + 173848474 CAGTCACCTCTATCCAC---CCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     322005 20 +   2037526 CAGTCACCTCTATCCAC---CCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74988467 20 + 122973662 CAGTCACCTCTATCCAC---CCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30866672 20 + 172585720 CAGTCACCTCTATCCAC---CCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30156128 20 - 170955103 CAGTCACCTCTATCCAC---CCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     404956 20 +   1495729 CAGTCACCTCTATCCAC---CCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     508808 20 -    863181 CAGTCACTTCTATCCAC---CCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29655688 20 -  71996105 CAGTCACCTCTATCCAC---CCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     388611 20 -    735854 CAGTCACCTCTATCCAC---CCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     294003 20 -   1829203 CAGTCACCTCTATTCAC---CCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30492364 20 + 171630274 CAGCCACCTCTGTCCAC---CCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           298763 20 +    515838 CAGCAACCTCTATCCAC---CTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     929693 20 -   1771730 CAGCCACCTCTGTCCAC---CCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     108673 20 -    486031 CAGCCACCTCTGTCCAC---CCA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           343273 16 +  18854210 C----ACCTCTTTCTGC---CCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58120844 15 -  94987271 GACCCTCTGCTTTCT--------
i mm10.chr17               C 0 C 0
s canFam3.chr35              169829 23 -  26524999 CAGAGACCCCCATGCACAAGCCA
i canFam3.chr35            n 47 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e proCoq1.NW_012149775v1     200947 1264 -   1411461 I

a score=1646722.000000
s hg38.chr6_GL000254v2_alt  1511233 114 +   4827813 -----TTCTTC----TCCCCACAGGATCGTCTCAGGAGTCGACTGGAAGCTCTGAGCACGGAGAGAGATGAGATTGAGGATGTAAAGTGTCAAGAAGACCAGAAGCTTCAAGTGCTGCTGGTA
s panTro5.chr6             30379993 114 + 175400573 -----TTCTTC----TCCCCACAGGATCGTCTCAGGAGTCGATTGGAAGCTCTGAGCATGGAGAGAGATGAGATTGAGGATGTAAAGTGTCGAGAAGACCAGAAGCTTCAAGTGCTGCTGGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30614318 114 + 173848474 -----TTCTTC----TCCCCACAGGATCGTCTCAGGAGTCGATTGGAAGCTCTGAGCATGGAGAGAGATGAGATTGAGGATGTAAAGTGTCGAGAAGACCAGAAGCTTCAAGTGCTGCTGGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     322025 114 +   2037526 -----TTCTTC----TCCCCACAGGATCGTCTCAGGAGTCGATTGGAAGCTCTGAGCATGGAGAGAGATGAGATTGAGGATGTAAAGTGTCGAGAAGACCAGAAGCTTCAAGTGCTGCTGGTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74988487 114 + 122973662 -----TTCTTC----TCCCCACAGGATCGTCTCAGGAGTCGATTGGAAGCTCTGAGCATGGAGAGAGATGAGATTGAGGATGTAAAGTGTCGAGAAGACCAGAAGCTTCAAGTGCTGCTGGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30866692 114 + 172585720 -----TTCTTC----TCTCCATAGGATCGTCTCAGGAGTCGACTGGAAGCTCTGAGCATGGAGAGAGATGAGATTGAGGATGTAAAGTGTCGAGAAGACCAGAAGCTTCAAGTGCTGCTGGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30156148 114 - 170955103 -----TTCTTC----TCTCCATAGGATCGTCTCAGGAGTCGACTGGAAGCTCTGAGCATGGAGAGAGATGAGATTGAGGATGTAAAGTGTCGAGAAGACCAGAAGCTTCAAGTGCTGCTGGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     404976 114 +   1495729 -----TTCTTC----TCTCCATAGGATCGTCTCAGGAGTCGACTGGAAGCTCTGAGCATGGAGAGAGATGAGATTGAGGATGTAAAGTGTCGAGAAGACCAGAAGCTTCAAGTGCTGCTGGTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     508828 114 -    863181 -----TTCTTC----TCTCCATAGGATCGTCTCAGGAGTCGACTGGAAGCTCTGAGCATGGAGAGAGATGAGATTGAGGATGTAAAGTGTCGAGAAGACCAGAAGCTTCAAGTGCTGCTGGTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29655708 114 -  71996105 -----TTCTTC----TCTCCATAGGATCGTCTCAGGAGTCGACTGGAAGCTCTGAGCATGGAGAGAGATGAGATTGAGGATGTAAAGTGTCGAGAAGACCAGAAGCTTCAAGTGCTGCTGGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     388631 114 -    735854 -----TTCTTC----TCTCCATAGGATCGTCTCAGGAGTCGACTGGAAGCTCTGAGCATGGAGAGAGATGAGATTGAGGATGTAAAGTGTCGAGAAGACCAGAAGCTTCAAGTGCTGCTGGTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     294023 114 -   1829203 -----TTCTTC----TCTCCATAGGATCGTCTCAGGAGTCGACTGGAATCTCTGAGCATGGAGAGAGATGAGATTGAGGATGTAAAGTGTCGAGAAGACCAGAAGCTTCAAGTGCTGCTGGTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30492384 114 + 171630274 -----TTCTTC----TCCCCACAGGATCGTCTGAGGAGTCGATTGGAAGCCCTGAGCATGGAGAGAGATGAGATTGAGGATGTAAAGTGTGGAGAAGATCAGAAGCTTCAAGTGCTGCTGGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           298783 114 +    515838 -----TTCTTC----TCCCCACAGGATCGTCTCAGGAGTCGATTGGAAGCCCTGAGCATGGAGAGAGATGAGATTGAGGATGTAAAATGTGGAGAAGACCAGAAGCTCCAAGCGCTGCTGGTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     929713 114 -   1771730 -----TTCTTC----TCCCCACAGGATCGTCTCAGGAGTCGACTGGAAGCCCTGAGCATGGAGAGAGATGAGATTGAGGACGTAAAGTGCGGAGAAGACCAGAAGCTTCAAGCACTGCTGGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     108693 114 -    486031 -----TTCTTC----TCCCCACAGGATCGTCTCAGGAGTCGATTGGAAGCCCTGAGCATGGAGAGAGATGAGATTGAGGATATAAAGTGTGGAGAAGACCAGAAGCTTCAAGCGCTGCTGGTA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     202211 113 -   1411461 -----TTCTCC----TCCCCACAGGAGCATCTCAGGAGTCGGCGGGAAGCTCTGAGCGTGGAGAGAGATGAAA-TGGGGACATGAAGTGTCGAGAAGAGCAGAAGCTCCGAGTGCTTCTTGGG
i proCoq1.NW_012149775v1   I 1264 C 0
s otoGar3.GL873550           343289 114 +  18854210 -----TTCTCC----TCCCCATAGGATCGTCTCAGGAGTCGGCTAGAAGCTCTAATTGTGGAAAGAGATGAAATTGAGAACATAAAGTATCAAGAAGACCAGAAGCTTCAAGTGCTTCTGGTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58120859 111 -  94987271 --------TTT----TTCTGACAGGATCGTCTCAGGAGTCGGTTAGAAGCTCTAAGAATGGAGAGGGACAAGATAGAAGATAGGAAATGTCAAGAAGACCAGAAGCTCCAGGAGGTTCTGGTA
i mm10.chr17               C 0 C 0
s canFam3.chr35              169852 123 -  26524999 TTGTTTCCTACTCTGTCCCTCCAGGAGCAAATACAGAAGTGTCTTGAGTGTCTGAGAAGAGAGAGAGAGGAGATTCAAAGAATCCAGTCGAGAGAAAACCAGCGGATACAAGTCCTCCTAGTA
i canFam3.chr35            C 0 n 0
e micMur3.chr6               383221 1852 + 123392446 I

a score=142163.000000
s hg38.chr6_GL000254v2_alt  1511347 12 +   4827813 CAGGCCACGT---CA
s panTro5.chr6             30380107 12 + 175400573 CAGGCCACGT---CA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30614432 12 + 173848474 CAGGCCACGT---CA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     322139 12 +   2037526 CAGGCCACGT---CA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74988601 12 + 122973662 CAGGCCACGT---CA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30866806 12 + 172585720 CAGGCCACTT---CA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30156262 12 - 170955103 CAGGCCACTT---CA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     405090 12 +   1495729 CAGGCCACTT---CA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     508942 12 -    863181 CAGGCCACTT---CA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29655822 12 -  71996105 CAGGCCACTT---CA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     388745 12 -    735854 CAGGCCACTT---CA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     294137 12 -   1829203 CAGGCCACTT---CA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30492498 12 + 171630274 CAGGCCACGT---CA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           298897 12 +    515838 CAGGCCACGT---CA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     929827 12 -   1771730 CAGGCCACGT---CA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     108807 12 -    486031 CAGGCCACAT---CA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     202324 12 -   1411461 AAGGCCGCAC---CA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           343403 12 +  18854210 AAGGCCACAC---TA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58120970 15 -  94987271 AAGATCACACACACA
i mm10.chr17               C 0 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e canFam3.chr35              169975  0 -  26524999 I

a score=271550.000000
s hg38.chr6_GL000254v2_alt  1511359 19 +   4827813 C---TGGCTACCTTTTCCTTTG
s panTro5.chr6             30380119 19 + 175400573 C---TGGCTACCTTTTCCTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30614444 19 + 173848474 C---TGGCTACCTTTTCCTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     322151 19 +   2037526 C---TGGCTACCTTTTCCTTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74988613 19 + 122973662 C---TGGCTACCTTTTCCTTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30866818 19 + 172585720 C---TGGCTACCTTTTCCTTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30156274 19 - 170955103 C---TGGCTACCTTTTCCTTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     405102 19 +   1495729 C---TGGCTACCTTTTCCTTTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     508954 19 -    863181 C---TGGCTACCTTTTCCTTTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29655834 19 -  71996105 C---TGGCTACCTTTTCCTTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     388757 19 -    735854 C---TGGCTACCTTTTCCTTTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     294149 19 -   1829203 C---TGGCTACCTTTTCCTTTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30492510 19 + 171630274 C---TGTCTACCTTTTCCTTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           298909 19 +    515838 C---TGGCTACCTTTTCCTTTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     929839 19 -   1771730 C---TGGCTACCTTTTCCTTTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     108819 18 -    486031 C---TGGCTACC-TTTCCTTTG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     202336 19 -   1411461 C---TGGGCACTTTCTCCTTTG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           343415 18 +  18854210 T---TGGCCACTTTCTCCTTT-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58120985 22 -  94987271 CCTATGGCTGTCTGTTCCTTTG
i mm10.chr17               C 0 I 822
s canFam3.chr35            26358944 19 +  26524999 C---TGGCCTCCTTCTCTTTTG
i canFam3.chr35            I 47 C 0
e micMur3.chr6               383221 1852 + 123392446 I

a score=21154.000000
s hg38.chr6_GL000254v2_alt  1511378 2 +   4827813 AA
s panTro5.chr6             30380138 2 + 175400573 AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30614463 2 + 173848474 AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     322170 2 +   2037526 AA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74988632 2 + 122973662 AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30866837 2 + 172585720 AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30156293 2 - 170955103 AA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     405121 2 +   1495729 AA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     508973 2 -    863181 AA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29655853 2 -  71996105 AA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     388776 2 -    735854 AA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     294168 2 -   1829203 AA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30492529 2 + 171630274 AA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           298928 2 +    515838 AA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     929858 2 -   1771730 AA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     108837 2 -    486031 AA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     202355 2 -   1411461 GG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           343433 2 +  18854210 GG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26358963 2 +  26524999 GA
i canFam3.chr35            C 0 I 224
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58121007 822 -  94987271 I

a score=321021.000000
s hg38.chr6_GL000254v2_alt  1511380 24 +   4827813 GG-TTTTCTTAAGAGACTCTGGGGA
s panTro5.chr6             30380140 24 + 175400573 GG-TTTTCTTAAGAGACTCTGGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30614465 24 + 173848474 GG-TTTTCTTAAGAGACTCTGGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     322172 24 +   2037526 GG-TTTTCTTAAGAGACTCTGGGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74988634 24 + 122973662 GG-TTTTCTGAAGAGACTCTAGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30866839 24 + 172585720 GG-TTTTCTTAAGAGACTCTGGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30156295 24 - 170955103 GG-TTTTCTTAAGAGACTCTGGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     405123 24 +   1495729 GG-TTTTCTTAAGAGACTCTGGGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     508975 24 -    863181 GG-TTTTCTTAAGAGACTCTGGGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29655855 24 -  71996105 GG-TTTTCTTAAGAGACTCTGGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     388778 24 -    735854 GG-TTTTCTTAAGAGACTCTGGGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     294170 24 -   1829203 GG-TTTTCTTAAGAGACTCTGGGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30492531 25 + 171630274 GGTTTTTCTTAACAGACTCTGGGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           298930 25 +    515838 GGTTTTTCTTAACAGACTCTGGGGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     929860 25 -   1771730 GGTTTTTCTTAACAGACTCTGGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     108839 25 -    486031 GGTTTTTCTTAACAGTTTCTGGAGA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     202357 24 -   1411461 GG-TTTTCTTAACAGACTCTGGGGA
i proCoq1.NW_012149775v1   C 0 I 15126
s otoGar3.GL873550           343435 24 +  18854210 GA-TTTTCTTAACAGACCCTGGGGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26359189 24 +  26524999 GG-TTTTCTTATCAGACTCCGGGGA
i canFam3.chr35            I 224 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58121007 822 -  94987271 I

a score=215482.000000
s hg38.chr6_GL000254v2_alt  1511404 23 +   4827813 AACCCGTTGGCTGGTATCTGTTT
s panTro5.chr6             30380164 23 + 175400573 AACCCGTTGGCTGGTATCTGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30614489 23 + 173848474 AACCCGTTGGCTGGTATCTGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     322196 23 +   2037526 AACCCGTTGGCTGGTATCTGTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74988658 23 + 122973662 AACCTGTTGGCTGGTATCTGTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30866863 23 + 172585720 AACCTGTTGGCTGGTATCTGTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30156319 23 - 170955103 AACCTGTTGGCTGGTATCTGTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     405147 23 +   1495729 AACCTGTTGGCTGGTATCTGTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     508999 23 -    863181 AACCTGTTGGCTGGTATCTGTTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29655879 23 -  71996105 AACCTGTTGGCTGGTATCTGTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     388802 23 -    735854 AACCTGTTGGCTGGTATCTGTTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     294194 23 -   1829203 AACCTGTTGGCTGGTATCTGTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30492556 23 + 171630274 AAACTGTTGGCTGGTATCTGTCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           298955 23 +    515838 AAACTGTTGGCTGGTATCTGGTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     929885 23 -   1771730 AAACTGTTGGCTGGTATCTGTTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     108864  9 -    486031 AAACTGTT--------------G
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           343459 23 +  18854210 AGCCTGTTGGTTAGTGTCTGTTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26359213 21 +  26524999 AGCTTGTT-TCTGGCACTTTTG-
i canFam3.chr35            C 0 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58121007 822 -  94987271 I
e proCoq1.NW_012149775v1     202381 15126 -   1411461 I

a score=779544.000000
s hg38.chr6_GL000254v2_alt  1511427 71 +   4827813 CCTGGCTGAAAAGAACTGACAAACTGTTCTCGTTCACCTTCCTGTGGCTGCACAAAGGCATTTGGG-------------ATCTC
s panTro5.chr6             30380187 71 + 175400573 CCTGGCTGAAAAGAACTGACAAACTGTTCTCATTCACCTTCCTGTGGCTGCACAAAGGCATTTGGG-------------ATCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30614512 71 + 173848474 CCTGGCTGAAAAGAACTGACAAACTGTTCTCATTCACCTTCCTGTGGCTGCACAAAGGCATTTGGG-------------ATCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     322219 71 +   2037526 CCTGGCTGAAAAGAACTGACAAACTGTTCTCATTCACCTTCCTGTGGCTGCACAAAGGCATTTGGG-------------ATCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74988681 71 + 122973662 TCTGGCTGAAAAAAGCTGACAAACTATTCTCATTCACCTTCCTGTGGCTGCACAAAGGCATTTGGG-------------ATCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30866886 57 + 172585720 CCTGG--------------CAAACTGTTCTCATTCACCTTCCTGTGGCTGCACAAAGGCATTTGGG-------------ATCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30156342 57 - 170955103 CCTGG--------------CAAACTGTTCTCATTCACCTTCCTGTGGCTGCACAAAGGCATTTGGG-------------ATCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     405170 57 +   1495729 CCTGG--------------CAAACTGTTCTCATTCACCTTCCTGTGGCTGCACAAAGGCATTTGGG-------------ATCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     509022 57 -    863181 CCTGG--------------CAAACTGTTCTCATTCACCTTCCTGTGGCTGCACAAAGGCATTTGGG-------------ATCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29655902 57 -  71996105 CCTGG--------------CAAACTGTTCTCATTCACCTTCCTGTGGCTGCACAAAGGCATTTGGG-------------ATCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     388825 57 -    735854 CCTGG--------------CAAACTGTTCTCATTCACCTTCCTGTGGCTGCACAAAGGCATTTGGG-------------ATCTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     294217 57 -   1829203 CCTGG--------------CAAACTGTTCTCATTCACCTTCCTGTGGCTGCACAAAGGCATTTGGG-------------ATCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30492579 71 + 171630274 CCTGGCTGAAAAGAACTGGCACACTGTTCTCATTCACCTTTCTGTGGCTGCACAAAGGCATTtggg-------------atctc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           298978 71 +    515838 CCTGGCTGAAAAGAACTGGCAAACTGTTCTCATTCACCTTTCTGTGGCTGCACAAAGGCATTtggg-------------atctc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     929908 71 -   1771730 CCTGGCTGAAAAGAACTGGCAAACTACTCTCATTCACCTTCCTGTGGCTGCACAAAGGCATTtggg-------------atctc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     108873 71 -    486031 CCTGGCTGAAAAGAACTGGCAAACTGTTCTCATTCATCTTCCTGTGGCTGCACAAAAGCATTTGGG-------------GTCTC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     217507 71 -   1411461 CCTGGCTGGAAAGAACCGGCAAACTGGTCTCGGTCACCTTCCTGCCATTGTACACAGGCATTtggg-------------atctc
i proCoq1.NW_012149775v1   I 15126 I 321
s otoGar3.GL873550           343482 71 +  18854210 CCTGGCTGGAAAGAACCAGCAAACTGTTCTCATTCACCTTCCTGTCATTGTACAAGGGCCTTtggg-------------atctc
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26359234 73 +  26524999 CCCATTGGGAAAGA----------TATTCTC-TTCACTTCCCTACTTCTGCCCAAGGGCATCTGGGCCAAGGTTGTGGAGTCCC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58121007 822 -  94987271 I

a score=1384320.000000
s hg38.chr6_GL000254v2_alt  1511498 123 +   4827813 AGAC---CATGAGCACTAGAAGTGGTTCT---------------------------------------GATGT-CTTGC-AATCCA------agatccatcttgtatatcacattttacagagcagaaaacttaggaccagaaaagcaa-tgctcccaaggccacatagcaaag
s panTro5.chr6             30380258 123 + 175400573 AGAC---CATGAGCACTAGAAGTGGTTCT---------------------------------------GATGT-CTTGC-AATCCA------AGATCCATCTTGTATATCAcattttacagagcagaaaacttaggaccagaaaagcaa-tgctgccaaggccacatagcaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30614583 123 + 173848474 AGAC---CATGAGCACTAGAAGTGGTTCT---------------------------------------GATGT-CTTGC-AATCCA------agatccatcttgtatatcacattttacagagcagaaaacttaggaccagaaaagcaa-tgctgccaaggccacatagcaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     322290 123 +   2037526 AGAC---CATGAGCACTAGAAGTGGTTCT---------------------------------------GATGT-CTTGC-AATCCA------AGATCCATCTTGTATATCAcactttacagagcagaaaacttaggaccagaaaagcaa-tgctcccaaggccacatagcaaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74988752 123 + 122973662 AGAC---CATGAGCACTAGAAGCGGTTCT---------------------------------------GATGT-CTTGC-AATCCA------agatccatcttgtatatcacattttacagagcagaaaacttaggtccagaaaagcaa-tgctcccagggccacatagcaaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30866943 123 + 172585720 AGAC---CATGGGCACTAGAAGTGGTTCT---------------------------------------GATGT-CTTGC-AATCCA------AGATCCATCTTATATATCAcattttacagagcagaaaactgaggtccagaaaagcaa-tgttcccaaggccacatagcaaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30156399 123 - 170955103 AGAC---CATGGGCACTAGAAGTGGTTCT---------------------------------------GATGT-CTTGC-AATCCA------AGATCCATCTTATATATCAcattttacagagcagaaaactgaggtccagaaaagcaa-tgttcccaaggccacatagcaaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     405227 123 +   1495729 AGAC---CATGGGCACTAGAAGTGGTTCT---------------------------------------GATGT-CTTGC-AATCCA------AGATCCATCttatatatcacattttacagagcagaaaactgaggtccagaaaagcaa-tgttcccaaggccacatagcaaag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     509079 123 -    863181 AGAC---CATGGGCACTAGAAGTGGTTCT---------------------------------------GATGT-CTTGC-AATCCA------AGATCCATCTTATATATCAcattttacagagcagaaaactgaggtccagaaaagcaa-tgctcccaaggccacatagcaaag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29655959 123 -  71996105 AGAC---CATGGGCACTAGAAGTGGTTCT---------------------------------------GATGT-CTTGC-AATCCA------AGATCCATCTTATATATCAcattttacagagcagaaaactgaggtccagaaaagcaa-tgctcccaaggccacatagcaaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     388882 123 -    735854 AGAC---CATGGGCACTAGAAGTGGTTCT---------------------------------------GATGT-CTTGC-AATCCA------AGATCCATCttatatatcacattttacagagcagaaaactgaggtccagaaaagcaa-tgctcccaaggccacatagcaaag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     294274 123 -   1829203 AGAC---CATGGGCACTAGAAGTGGTTCT---------------------------------------GATGT-CTTGC-AATCCA------AGATCCATCTTATATATCAcattttgtagagcaaaaaactgagatccagaaaagcaa-tgttcccaaggccacatagcaaag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30492650 123 + 171630274 agac---catcaacactggaagtggttct---------------------------------------gatgt-cttct-aataca------agatccatcttacacatcacattttacagagcagaaaactgaggtccagaaaagcaa-cattctcaaggccacgtagcaaag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           299049 123 +    515838 agac---catcagcactggaagtggttct---------------------------------------gatgt-cttct-aataca------agatccatcttacatatcacgttttacagagcagaaaactgaggtccagaaaagcaa-cgttctcaaggccacatagcaaag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     929979 123 -   1771730 agac---catcagcactggaagtggttct---------------------------------------gatgt-cttct-aataca------agatccatcttacatatcacattttacagagcagaaaactgaggtccagaaaagcaa-tgttctcaaggccacatagcaaag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     108944 123 -    486031 agac---catcagcactggaagtggttct---------------------------------------gatgt-cttct-aataca------agatccatcttacttatcacattttacagagcagaaaactgaggtccagaaaagcag-cgttctcaaggccacatagcaaag
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           343553 119 +  18854210 agaa---catcagcactggaagtagttct---------------------------------------gacat-ctttctaattca------agatccatcttatttgccattttttacagaatggaaaa-----gtctaggaaagtga-tactcccaaggccacatgccaaag
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26359307 169 +  26524999 AGTCCCACATCACAGCTGGATGTGGTTCTTtttttatttttatttttattttatttttttatttttTGGATGTGGTTCT-GATACACCGTCCACAACCATCTTATCAGCCAC--CTTACAGAGCAGAGAAC--AGGTCTGGGAACGTGACCACTGCCAAGGCCACAGAGCCGAG
i canFam3.chr35            C 0 I 222
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58121007 822 -  94987271 I
e proCoq1.NW_012149775v1     217578 321 -   1411461 I

a score=101146.000000
s hg38.chr6_GL000254v2_alt  1511621 14 +   4827813 ctgaagttcatgag
s panTro5.chr6             30380381 14 + 175400573 ctgaagttcatgag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30614706 14 + 173848474 ctgaagttcatgag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     322413 14 +   2037526 ctgaagttcatgag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74988875 14 + 122973662 cccaagttcatgat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30867066 14 + 172585720 tgcaatttcataat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30156522 14 - 170955103 tgcaatttcataat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     405350 14 +   1495729 tgcaatttcataat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     509202 14 -    863181 tgcaatttcataat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29656082 14 -  71996105 tgcaatttcataat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     389005 14 -    735854 tgcaatttcataat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     294397 14 -   1829203 tgcaatttcataat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30492773 14 + 171630274 tccacattcataat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           299172 14 +    515838 cccaagttcataat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     930102 14 -   1771730 cccaagttcataat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     109067 14 -    486031 cccaagttcataat
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           343672 14 +  18854210 cccaagttcatgat
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58121007 822 -  94987271 I
e proCoq1.NW_012149775v1     217578 321 -   1411461 I
e canFam3.chr35            26359476 222 +  26524999 I

a score=1953328.000000
s hg38.chr6_GL000254v2_alt  1511635 176 +   4827813 ga----------acctggatttcttgacccttaattcattgttctttccatcctagtctgtttgccTGAACACACCACCTTCAGATGGGAAGCTTGGGGTCA-AAAACATATGTTAGTGTCGGGATTCTAGTCCTGACTAC-AGGCTGACCTTGAGGAGAGTAGGCTGATGGTGTGGCTACATCTGGA
s panTro5.chr6             30380395 176 + 175400573 ga----------acctggatttcttgacccttaattcatttttctttCCATCCTAGTCTGTTTGCCTGAACACACCACCTTCAGATGGGAAGCTTGGGGTCA-AAAATATATGTTAGTGTCGGGATTCTAGTCCTGACTAC-AGGCTGACCTTGAGGACAGTAGGCTGATGGTGTGGCTACATCTGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30614720 176 + 173848474 ga----------acctggatttcttgacccttaattcatttttctttCCATCCTAGTCTGTTTGCCTGAACACACCACCTTCAGATGGGAAGATTGGGGTCA-AAAATATATGTTAGTGTCGGGATTCTAGTCCTGACTAC-AGGCTGACCTTGAGGACAGTAGGCTGATGGTGTGGCTACATCTGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     322427 176 +   2037526 ga----------acctggatttcttgacccttaattcatttttctttCCATCCTAGTCTGTTTGCCTGAACACACCACCTTCAGGTGGGAAGCCTGGGGTCA-AAAACATATGTTAGTGTCGGGATTCTAGTCCTGACTAC-AGGCTGACCTTGAGGACAGTAGGCTGATGGTATGGCTACATCTGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74988889 177 + 122973662 ga----------acctggatctcttgacccttaattcattgttctttccattctagtctgtctgccTGAACACACCACCTTCAGATGGGAAGCTTGGGGTCAGAAAGTATATATTAGGGTCAGGATTCTAGTCCGGACCAC-AGGCTGACCTTGAGGACAGTAGGCTAATGGTGTGGCTACATCTGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30867080 177 + 172585720 ga----------acctggatttcttgacccttaattaattgttctttccatctttgtctgtctgccTGAACACACCACCTTCAGATGGGAAGCTTGGGGTCAGAAGGTGTATATTAGTGTCTGGATTCTAGTCCTGACTAC-AGGCTGACCTTGAGGACAGTAGGCTGATGGTGTGGCTACATCTGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30156536 177 - 170955103 ga----------acctggatttcttgacccttaattaattgttctttccatctttgtctgtctgccTGAACACACCACCTTCAGATGGGAAGCTTGGGGTCAGAAGGTGTATATTAGTGTCTGGATTCTAGTCCTGACTAC-AGGCTGACCTTGAGGACAGTAGGCTGATGGTGTGGCTACATCTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     405364 177 +   1495729 ga----------acctggatttcttgacccttaattaattgttctttccatctttgtctgtctgccTGAACACACCACCTTCAGATGGGAAGCTTGGGGTCAGAAGGTGTATATTAGTGTCTGGATTCTAGTCCTGACTAC-AGGCTGACCTTGAGGACAGTAGGCTGATGGTGTGGCTACATCTGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     509216 177 -    863181 ga----------acctggatttcttgacccttaattcattgttctttccatctttgtctgtctgccTGAACACACCACCTTCAGATGGGAAGCTTGGGGTCAGAAGGTGTATATTAGTGTCTGGATTCTAGTCCTGACCAC-AGGCTGACCTTGAGGACAGTAGGCTGATGGTGTGGCTACATCTGGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29656096 177 -  71996105 ga----------acctggatttcttgacccttaattcattgttctttccatcttagtctgtctgccTGAACACACCACCTTCAGATGGGAAGCTTGGAGTCAGAAGGTGTATATTAGTGTCTGGATTAGAGTCCTGACCAC-AGGCTGACCTTGAGGACAGTAGGCTGATGGTGTGGCTACATCTGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     389019 177 -    735854 ga----------acctggatttcttgacccttaattcattgttctttccatctttgtctgtctgccTGAACACACCACCTTCAGATGGGAAGCTTGGGGTCAGAAGGCGTATATTAGTGTCTGGATTCTAGTCCTGACCAC-AGGCTGACCTTGAGGACAGTAGGCTGATGGTGTGGCTACATCTGGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     294411 167 -   1829203 ga----------acctggatttcttgacccttaattcattgttctttccatcctagtctgtctgccTGAACACACCACCTTCAGATGGGAAGCTTGGGGTCAGAAG----------GTGTCTGGATTCTAGTCCTGACCAC-AGGCTGACCTTGAGGACAGTAGGCTGATGGTGTGGCTACATCTGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30492787 176 + 171630274 ga----------acctggacctcttggcccttaatccattgttctttccgtcctagtctgtcTTCCCGAATATACCACCTTCAGATGGGAAGCTTGGCGTCCAAAGGTGTATATTAGTGTCAGGATTCTAGTCCTGACCA--AGGTTGACCTTGAGGACAGTAGGCTGATGGTGTGGCTGCATCTGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           299186 176 +    515838 ga----------acctggatctcttgacccttaatccattgttctttcCATCCTAGTCTGTCTTCCTGAATATACCACCTTCAGATGGGAAGCTTGACATCGGAAGGCATAAATTAGTGTCAGGATTCTAGTCCTGACCA--AAGTTGACCTTGAGGACAGTACGCTGATGGTGTGGCTGCATCTGGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     930116 176 -   1771730 ga----------acctggatctcttgacccttaatccattgttctttccatcctagtctgtcttcctGAATATACCACCTTCAGATGGGAAGCTTGGCGTCAGAAGGTGTATATTAGTGTCAGGATTCTAGTCCTGACCA--AGGTTGACCTTGAGGACAGTAGGCTGATGGTGTGGCTGCATCTGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     109081 176 -    486031 ga----------acatggatctcttgatccttaatccattgttctttccatcctagtctgtcttcctGAATACACCACCTTCAGATGGGAAGCTTGGCATCAGAAGGTGTATATTAGTGTCAGGATTCTAGTCCTGACCA--AGGTTGACCTTGAGGACAGTAGGCTGATGGTGTGGCTGCATCTGGC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           343686 187 +  18854210 gaaatgactagcacctgggtctcctgacccttagtccattgctcttcctgcccaAGTCTATCTACTTGAACACACCATCTGCAAATGGGAATCTTAGGATCAGAAGGTGTATATTCATGTCTGGATTCTAATCCTGACCACAAGGCTGACCTTGAGGACGG-GGGCAGATGGTGTGGCTATATCTGGC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26359698 144 +  26524999 GG----------ACCTGGGTCTCTTGACC--TGGGCCGCTGTTC---CCATCCCAGTCTGTTTGCTGGGAAGCACTGCCTTCAGATGGGAAGTTC------------------------TCTGG--TCTAGTCCTGATCTG-AGGCCGGCCCTGAGCACTGTGGGTGAGTGCTGTGGCT--CTCTGGC
i canFam3.chr35            I 222 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58121007 822 -  94987271 I
e proCoq1.NW_012149775v1     217578 321 -   1411461 I

a score=560685.000000
s hg38.chr6_GL000254v2_alt  1511811 41 +   4827813 TCCCTCACGCCTCTCTTTTCATGCTATAAAGTTATGGAGGA
s panTro5.chr6             30380571 41 + 175400573 TCCCTCACGCCTCTTTTTTCATGCTATAAAGTTATGGAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30614896 41 + 173848474 TCCCTCACGCCTCTTTTTTCATGCTATAAAGTTATGGAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     322603 41 +   2037526 TCCCTCACGCCTCTTTTTTCATGCTATAAAATTATGGAGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74989066 41 + 122973662 TCCCTCATGCCTCTTTTTTCATGCTATAAAGTTATGGAGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30867257 41 + 172585720 TCCCTCATGCCTCTTTTTTCATGCTATAAAGTTATGGAGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30156713 41 - 170955103 TCCCTCATGCCTCTTTTTTCATGCTATAAAGTTATGGAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     405541 41 +   1495729 TCCCTCATGCCTCTTTTTTCATGCTATAAAGTTATGGAGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     509393 41 -    863181 TCCCTCATGCCTCTTTTTTCATGCTATAAAGTTATGGAGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29656273 41 -  71996105 TCCCTCATGCCTCTTTTTTCATGCTATAAAGTTATGGAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     389196 41 -    735854 TCCCTCATGCCTCTTTTTTCATGCTATAAAGTTATGGAGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     294578 41 -   1829203 TCCCTCATGCCTCTTTTTTCATGCTATAAAGTTATGGAGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30492963 41 + 171630274 TCCCTCACGCCTCTTTTTTCATGCTGTAAAGTTATGGAGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           299362 41 +    515838 TCCCTCACGCCTCTTTTTTCATGCTATAAAGTTGTGGAGGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     930292 41 -   1771730 TCCCTCACGCCTCTTTTTTCATGCTATAAAGTTATGGAGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     109257 41 -    486031 TCCCTCACGCCTCTTTTTTCATGCTATAAAGTTATGGAGGA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     217899 41 -   1411461 TCCCTCCTGCCTCTTTTTTCATGCTACAAAGTTATGAAGGA
i proCoq1.NW_012149775v1   I 321 I 312
s otoGar3.GL873550           343873 41 +  18854210 TCCCTCTCACCTTTTTCTTCATGCTACACAATTATGaagaa
i otoGar3.GL873550         C 0 I 3
s canFam3.chr35            26359842 41 +  26524999 TCACTGCCATCTCTATTTCTGAGCCACATGGCTACCCAGGA
i canFam3.chr35            C 0 I 5
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58121007 822 -  94987271 I

a score=189152.000000
s hg38.chr6_GL000254v2_alt  1511852 17 +   4827813 ATCACAGTGTGAGGATT
s panTro5.chr6             30380612 17 + 175400573 ATCACAGTGTGAGGATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30614937 17 + 173848474 ATCACAGTGTGAGGATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     322644 17 +   2037526 ATCACAGTGTGAGGATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74989107 17 + 122973662 ATCGCAGTGTGGGGATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30867298 17 + 172585720 ATCGCAGTGTGGGGATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30156754 17 - 170955103 ATCGCAGTGTGGGGATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     405582 17 +   1495729 ATCGCAGTGTGGGGATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     509434 17 -    863181 ATCACAGTGTGGGGATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29656314 17 -  71996105 ATCGCAGTGTGGGGATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     389237 17 -    735854 ATCACAGTGTGGGGATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     294619 17 -   1829203 ATCGCAGTGTGGGGATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30493004 17 + 171630274 ATCGGAGTGTGGGGATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           299403 17 +    515838 ATCGGAGTGTGGGGATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     930333 17 -   1771730 ATCGGAGTGTGGGGATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     109298 17 -    486031 ATCGGAGTGTGGGGATT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           343917 17 +  18854210 aattcaatgtggaaatc
i otoGar3.GL873550         I 3 C 0
s canFam3.chr35            26359888 17 +  26524999 ATTGCAGTAAGAGAATC
i canFam3.chr35            I 5 C 0
e micMur3.chr6               383221 1852 + 123392446 I
e mm10.chr17               58121007 822 -  94987271 I
e proCoq1.NW_012149775v1     217940 312 -   1411461 I

a score=1993486.000000
s hg38.chr6_GL000254v2_alt  1511869 164 +   4827813 TCTGGTACCTTGACCA-AGGAG-A--GAGTGTGGGGACAAAGCAACCTATCCACCAT-CCCTCAGCTCTCATCAACGT--------ATGCCCTGTAGTTGGTGATTTCCACGGCTAAAACCAAAATTACACACTCTCCCACTAAGTTGTGTTGACTCCAATC--------------------------------------------------------ACAACTTCCTTTTGC
s panTro5.chr6             30380629 164 + 175400573 TCTGGTACCTTGACCA-AGGAG-A--GAGTGTGGGGACAAAGCAACCTATCCACCAT-CCCTCAGCTCTCATCAAAGT--------ATGCCCTGTAGTTGGCGATTTCCACGGCTAAAACCAAAATTACACACTCTCCCACTAAGTTGTGTTGACTCCAATC--------------------------------------------------------ACAACTTCCTTTTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30614954 164 + 173848474 TCTGGTACCTTGACCA-AGGAG-A--GAGTGTGGGGACAAAGCAACCTGTCCACCAT-CCCTCAGCTCTCATCAAAGT--------ATGCCCTGTAGTTGGCGATTTCCACGGCTAAAACCAAAATTACACACTCTCCCACTAAGTTGTGTTGACTCCAATC--------------------------------------------------------ACAACTTCCTTTTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     322661 164 +   2037526 TCTGGTACCTTGACCA-AGGAG-A--GAGTGTGGGGACAAAGCAACCTATCCACCAT-CCCTCAGCTCTCATCAAAGT--------ATGCCCTGTAGTTGGTGATTTCCACGGCTAAAACCAAAATTACACACTCTCCCACTAAGTTGTGTTGACTCCAATC--------------------------------------------------------ACAACTTCCTTTTGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74989124 164 + 122973662 TCTGGTACCTTGACCA-AGGAG-A--CAGTGTGGGGACAAAACAACCTCTCGACCAT-TCCTCAGCTCTCATCAAAGT--------ATGCCCTGTAGTTGGTGATTTCCATGGCTAAAACCAAAATTATACACTCTCCCACTAAGTGGTGTTGACTCCAATC--------------------------------------------------------ACAACTTCCTTTTGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30867315 164 + 172585720 TCTAGTACATTGACCA-AGGAG-A--GAGTGTGGGGACAAAACAACTTCTCCACCAT-CCCTCAGCTCTCATCAAAGT--------ATGCCCTGTAGTTGGTGATTTCCATGGCTAAAACCAAAATTACACACTCTCCCACTAAGTTGTGTTGACTCGTATC--------------------------------------------------------ACAACTTCCTTTTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30156771 164 - 170955103 TCTAGTACATTGACCA-AGGAG-A--GAGTGTGGGGACAAAACAACTTCTCCACCAT-CCCTCAGCTCTCATCAAAGT--------ATGCCCTGTAGTTGGTGATTTCCATGGCTAAAACCAAAATTACACACTCTCCCACTAAGTTGTGTTGACTCGTATC--------------------------------------------------------ACAACTTCCTTTTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     405599 164 +   1495729 TCTAGTACATTGACCA-AGGAG-A--GAGTGTGGGGACAAAACAACTTCTCCACCAT-CCCTCAGCTCTCATCAAAGT--------ATGCCCTGTAGTTGGTGATTTCCATGGCTAAAACCAAAATTACACACTCTCCCACTAAGTTGTGTTGACTCGTATC--------------------------------------------------------ACAACTTCCTTTTGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     509451 164 -    863181 TCTAGTACCTTGACCA-AGGAG-A--GAGTGTGGGGACAAAACAACTTCTCCACTAT-CCCTCAGCTCTCATCAAAGT--------ATGCCCTGTAGTTGGTGATTTCCATGGCTAAAACCAAAATTACACACTCTCCCACTAAGTTGTGTTGACTCGTATC--------------------------------------------------------ACAACTTCCTTTTGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29656331 164 -  71996105 TCTAGTACCTTGACCA-AGAAG-A--GAGTGTGGGGACAAAACAACTTCTCCACTAT-CCCTCAGCTCTCATCAAAGT--------ATGCCCTGTAGTTGGTGATTTCCATGGCTAAAACCAAAATTACACACTCTCCCACTAAGTTGTGTTGACTCGTATC--------------------------------------------------------ACAACTTCCTTTTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     389254 164 -    735854 TCTAGTACCTTGACCA-AGGAG-A--GAGTGTGGGGACAAAACAACTTCTCCACTAT-CCCTCAGCTCTCATCAAAGT--------ATGCCCTGTAGTTGGTGATTTCCATGGCTAAAACCAAAATTACACACTCTCCCACTAAGTTGTGTTGACTCGTATC--------------------------------------------------------ACAACTTCCTTTTGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     294636 165 -   1829203 TCTAGTACCTTGACCA-AGGAG-A--GAGTGTGGGGACAAAACAACTTCTCCACCATCCCCTCAGCTCTCATCAAACT--------ATGCCCTGTAGTTGGTGATTTCCATGGCTAAAACCAAAATTACACACTCTCCCACTAAGTTGTGTTGATTCGTATC--------------------------------------------------------ACAACTTCCTTTTGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30493021 163 + 171630274 TCTGGTACCCTGACCA-AGGAA-A--CAGTGTGGGGACAAAACAATCTCT-CACCAT-CCCTCAGCTTTCATCAAAGT--------ATGCCCTGTAGATGGTGATTTCCATGGCTAAGACCAAAATCACACACTCTCCCACTAAGTTGTATTGACTCCAATC--------------------------------------------------------ACAACTTTCTTTGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           299420 164 +    515838 TCTGGTACCTTGACCA-AGGAG-A--CAGTGTGGGGACAAAACAGTCTCTCCCCCAT-CCCTCAGCTCTCATCAAAGT--------ATGCCCTGCAGATGGTGATTTCCATGGCTAAGACCAAAATCACACACTCTCCCACTAAGTTGTATTGACTCCAATC--------------------------------------------------------ACAACTTTCTTTGGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     930350 164 -   1771730 TCTGGTACCTTGACCA-AGGAG-A--CAGTATGGGGACAAAACAATCTCTCCACCAT-CCCTCAGCTCTCATCAAAGT--------ATGCCCTATAGAGGGTGATTTCCATGGCTAAGACCAAAATCACACACTCTCCCACTAAGGTGTATTGACTCCAATC--------------------------------------------------------ACAACTTTCTTTGGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     109315 164 -    486031 TCTGGTACCTTGACCA-AGGAG-A--CAGTGTGGGGACAAAACAATCTCTCCACTAT-CCCTCAGCTCTCATCAAAGT--------ATACCCTGTAGATGGTGATTTCCATGGCTAAGGCCAGAATCACACACTCTCCCACTAAGTTGTATTGACTCCAATC--------------------------------------------------------ACAACTTTCTTTGGT
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               385073 160 + 123392446 tctggtaccttgatca-aggag-actgagtgtggggacaggaaaatctct-cagcat-cccccaactcccatcaAAGC--------ATGCCCTGTAGATGGTGGCCTCCATGGCTAGGACCAA-----CGCATTCTTCCACTAAGTTGTGTTGACTCTAATT--------------------------------------------------------ACAACTGCTTTTTGC
i micMur3.chr6             I 1852 I 124
s otoGar3.GL873550           343934 228 +  18854210 tctggtaccttgacca-aggag-acggagtgtgggtccaggaagatctctccagcat-cccttaactcCTGTCAAAGTACCCATGGATACCCTGTACATGGTGACCTTCATGGCTAAGACCAA--TCTCACACTCTTCCACTAAGTTGCGTTGATTCTAATTCTAGAATCAACTAGATTGCGTTGAATCTTCCACTACTTGCGTTGAATCTAATTCTAACAACTTCCTTTTGC
i otoGar3.GL873550         C 0 I 10
s canFam3.chr35            26359905 154 +  26524999 CCTGGGGCACTGACCACAGGAGTA--GAGTGTGGGACCAGGAAAAGACCTCCAGCGG--TCTCTGCTCCCTTCAAAGT--------ATGCCATGCAGAAGGCAACCTTGGGGGCTGAGAGCAG--TGCCAAGCTCTCC---------GTGACAGCTCTGACC--------------------------------------------------------ACAGCTTTCTTTTGC
i canFam3.chr35            C 0 C 0
e mm10.chr17               58121007 822 -  94987271 I
e proCoq1.NW_012149775v1     217940 312 -   1411461 I

a score=638292.000000
s hg38.chr6_GL000254v2_alt  1512033 63 +   4827813 CTCTAAGAAATTATTACAGTCTT-CCCCACCTAACTCTAAGAAGGCATAGTAGGGTTATGATGG
s panTro5.chr6             30380793 63 + 175400573 CTCTAAGAAATTATTACAGTCTT-CCCCACCTAACTCTAAGAAGGCATAGTAGGGTTACGATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30615118 63 + 173848474 CTCTAAGAAATTATTACAGTCTT-CCCCACCTAACTCTAAGAAGGCACAGTAGGGTTACGATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     322825 63 +   2037526 CTCTAAGAAATTATTACAGTCTT-CCCCACCTAACTCTAAGAAGGCATAGTAGGGTTACGATGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74989288 63 + 122973662 CTCTAAGAAATGACTACAGTCTT-CCCCACCTAACTCTAAGAAGGCATAGTAGGGTTATGATGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30867479 62 + 172585720 CTCTAAGAAATGACTACAGTCTT-CCTC-CCTAACTTTAAGAAGGTATAGTAGGGTTAAGATGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30156935 62 - 170955103 CTCTAAGAAATGACTACAGTCTT-CCTC-CCTAACTTTAAGAAGGTATAGTAGGGTTAAGATGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     405763 62 +   1495729 CTCTAAGAAATGACTACAGTCTT-CCTC-CCTAACTTTAAGAAGGTATAGTAGGGTTAAGATGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     509615 62 -    863181 CTCTAAGAAATGACTACAGTCTT-CCCC-CCTAACTTTAAGAAGGTATAGTAGGGTTAAGATGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29656495 62 -  71996105 CTTTAAGAAATGACTACAGTCTT-CCCC-CCTAACTTTAAGAAGGTATAGTAGGGTTAAGATGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     389418 62 -    735854 CTCTAAGAAATGACTACAGTCTT-CCCC-CCTAACTTTAAGAAGGTATAGTAGGGTTAAGATGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     294801 62 -   1829203 CTCTAAGAAATGACTACTGTCTT-CCCC-CCTAACTTTAAGAAGGTATAGTAGGGTTAAGATGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30493184 63 + 171630274 CTCTAAGAAATGACTACAGTGTT-CCCCACCTAACTCTAAAAAGGTATAGTAGGGTTAAGATGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           299584 64 +    515838 CTCTAAGAAATGACTACAGTCTTCCCCCGCCTAATTCTAAGAAGGTATAGTAGGGTTAAGATGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     930514 63 -   1771730 CTCTAAGAAATGACTACAGTCTT-CCCCACCTAACTCTAAGAAGGTATAGTAGGGTTAAGATGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     109479 63 -    486031 CTCCAAGAAATGACTACAGTCTT-CCCCATCTAACTCTAAGAAGGTATATTAGGGTTAAGATGG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           344172 63 +  18854210 TTTTAAGAAATGACGACAGGCAT-TCTTACTCAATTCTATGAAGGCATGGTAGGGTTAAGATGG
i otoGar3.GL873550         I 10 C 0
s canFam3.chr35            26360059 43 +  26524999 TTC------ATGGCTCCCTGATT-AGTGACCTGGCTTGAGGGAAGGGTGG--------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               385233 124 + 123392446 I
e mm10.chr17               58121007 822 -  94987271 I
e proCoq1.NW_012149775v1     217940 312 -   1411461 I

a score=498418.000000
s hg38.chr6_GL000254v2_alt  1512096 45 +   4827813 TATTGTAGTTGTGGAAATA-TTTTTGAAAAGTTCAACATCATTCTG
s panTro5.chr6             30380856 45 + 175400573 TATTGTAGTTGTGGAAATA-TTTTTGAAAAGTTCAACATCATTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30615181 45 + 173848474 TATTGTAGTTGTGGAAATA-TTTTTGAAAAGTTCAACATCATTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     322888 45 +   2037526 TATTGTAGTTGTGGAAATA-TTTTTGAAAAGTTCAACATCATTCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74989351 45 + 122973662 TATTGCAGTTGTGGAAATA-TTTTTGAAAAGTTCAACATCATTCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30867541 45 + 172585720 TATTATAGTTGTGGAAATA-TTTTTGAAAAGTTCAACATAATTCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30156997 45 - 170955103 TATTATAGTTGTGGAAATA-TTTTTGAAAAGTTCAACATAATTCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     405825 45 +   1495729 TATTATAGTTGTGGAAATA-TTTTTGAAAAGTTCAACATAATTCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     509677 45 -    863181 TATTGTAGTTGTGGAAATG-TTTTTGAAAATTTCAACATAATTCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29656557 45 -  71996105 TATTGTAGTTGTGGAAATA-TTTTTGAAAACTTCAACATAATTCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     389480 45 -    735854 TATTGTAGTTGTGGAAATG-TTTTTGAAAATTTCAACATAATTCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     294863 45 -   1829203 TATTGCAGTTGTGGAAATA-TTTTTGAAAAGTTCAACATAATTCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30493247 45 + 171630274 TATTGCAGTTGTGGGAATA-TTTTTGAAAAGTTCAACGTTGTTCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           299648 45 +    515838 TATTGTAGTTGTGGAAATA-TTTTTGAAAAGTTCAACATTGTTCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     930577 45 -   1771730 TATTGTAGTTGTGGAAATA-TTTTTGAAAAGTTCAACATTGTTCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     109542 45 -    486031 TATTGTAGTTGTAGAAATA-TTTTTGAAAAGTTCAACATTGTTCTG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           344235 45 +  18854210 TATCATAGTTGCAGAAAGA-TTTTTTAAAAGTTAAACATGGCTCTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58121829 46 -  94987271 TATTATAGCTATGAAAGGATTTTTTTTTAAGTTAAGTGTGACTCTA
i mm10.chr17               I 822 I 1
s canFam3.chr35            26360102 23 +  26524999 CCTTGGAGATGAGGAAGGC-TCTG----------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               385233 124 + 123392446 I
e proCoq1.NW_012149775v1     217940 312 -   1411461 I

a score=77364.000000
s hg38.chr6_GL000254v2_alt  1512141 7 +   4827813 -AGA-GCAT
s panTro5.chr6             30380901 7 + 175400573 -AGA-GCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30615226 7 + 173848474 -AGA-GCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     322933 7 +   2037526 -AGA-GCAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74989396 7 + 122973662 -AGA-GCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30867586 7 + 172585720 -AGA-GTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30157042 7 - 170955103 -AGA-GCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     405870 7 +   1495729 -AGA-GTAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     509722 7 -    863181 -AGA-GCAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29656602 7 -  71996105 -AGA-GCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     389525 7 -    735854 -AGA-GCAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     294908 7 -   1829203 -AGA-GCAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30493292 7 + 171630274 -AGA-GCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           299693 7 +    515838 -AGA-GCAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     930622 7 -   1771730 -AGA-GCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     109587 7 -    486031 -ACA-GCAT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     218252 7 -   1411461 -AGA-GGAT
i proCoq1.NW_012149775v1   I 312 C 0
s otoGar3.GL873550           344280 7 +  18854210 -AGA-GGAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58121876 7 -  94987271 -AGA-GTTC
i mm10.chr17               I 1 C 0
s canFam3.chr35            26360125 7 +  26524999 CAGATGC--
i canFam3.chr35            C 0 C 0
e micMur3.chr6               385233 124 + 123392446 I

a score=1220837.000000
s hg38.chr6_GL000254v2_alt  1512148 87 +   4827813 AATGTAGCATTATTATTAGAGTATCTAGCTAAGACAGTAGCACAGCCCTCATCATTGGTAAGTTCATCCTGAGACCTAACTACTTCT
s panTro5.chr6             30380908 87 + 175400573 AATGTAGCATTATTATTAGAGTATCTAGCTAAGACAGTAGCACAGCCCTCATCATTGGTAAGTTCATCCTGAGACCTAACTACTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30615233 87 + 173848474 AATGTAGCATTATTATTAGAGTATCTAGCTAAGACAGTAGCACAGCCCTCATCATTGGTAAGTTCATCCTGAGACCTAACTACTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     322940 87 +   2037526 AATGTAGCATTATTATTAGAGTATCTAGCTAAGACAGTAGCACAGCCCTCATCATTGGTAAGTTCATCCTGAGACCTAACTACTTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74989403 87 + 122973662 AATGTAGCATTAGTATTAGAATCTCTAGCTAAGACAATAGCACAGCCCTCATCATTGGTAAGTTCATCCTGAGACCTATCTACTTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30867593 87 + 172585720 AATGTAATATTATTATTAGAATCTCTAGCTAAGACAGTAGCACAGTCCTCATCACTTGTAAGTTCATCCTGAGACCTATCTACTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30157049 87 - 170955103 AATGTAGTATTATTATTAGAATCTCTAGCTAAGACAGTAGCACAGTCCTCATCACTTGTAAGTTCATCCTGAGACCTATCTACTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     405877 87 +   1495729 AATGTAGTATTATTATTATAATCTCTAGCTAAGACAGTAGCACAGTCCTCATCACTTGTAAGTTCATCCTGAGACCTATCTACTTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     509729 87 -    863181 AATGTAGTATTATTATTAGAATCTCTAGCTAAGACAGTAGCACAGTCCTCATCACTTGTAAGTTCATCCTGAGACCTATCTACTTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29656609 87 -  71996105 AATGTAGTATTATTATTAGAATCTCTAGCTAAGACAGTAGCACAGTCCTCATCACTTGTAAGTTCATCCTGAGACCTTTCTACTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     389532 87 -    735854 AATGTAGTATTATTATTAGAATCTCTAGCTAAGACAGTAGCACAGTCCTCATCACTTGTAAGTTCATCCTGAGACCTATCTACTTCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     294915 87 -   1829203 AATGTAGTATTATTATTAGAATCTCTAGCTAAGACAGTAGCACAGTCCTCATCACTTGCAAGTTCATCCTGAGACCTATCTACTTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30493299 84 + 171630274 AATGTAGCATTATTATTAGAATCTCTAGCTAAGGCTGAAGCACAGCCCCTGTCATTGGTAAGTTCATCCTGAGACCTGTCT---TCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           299700 87 +    515838 AATGTAGGGTTATCATTAGAATCTCTAGCTAAGGCAGAAGCACAGCCCTTGTCATTGGTAAGTTCATCCTGAGACCTATCTTCCTCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     930629 84 -   1771730 AATGTAGCGTT---ATTAGAATCTCTAGCTAAGGCAGAAGCACAGCCCTTGTCATTGGTAAGTTCATCCTGAGACCTATCTTCTTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     109594 87 -    486031 AATGTAGTGTTATCATTAGAATCTCTAGCTAAGGCAGAAGCATAGCCCTTGTCATTGATAAGTTCATCCTGAGACCTATCTTCTTCT
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               385357 86 + 123392446 AATGTGGCATTATTA-TAGAGTCTCTAGCTAAGAAAATAGCACAGCCCTCATCACTGGCAAGTCCACCTTCAGACCTACCTACTTCT
i micMur3.chr6             I 124 I 7
s proCoq1.NW_012149775v1     218259 87 -   1411461 AATGTGGCATTATTATTAGAATCTCTAGCTAAGAAAATAGCACAGCCCTCATCACTGGTAAGTCCACCTTCAGACCTATCTACTTTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           344287 86 +  18854210 AATATGGCATTATTATTAGAATCTCTAGTTAAGAAAATAGCACAGCCTTCATCATTAGTAAGTTCA-CTTATGACCTATCTACTTTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58121883 84 -  94987271 CATATGATATTGTTAC---AATCTCTGGCTAAGACAACAGCTCAGAGCTCATCATCTGCAAGTGTATCTTGGGATCTATCTCTTTCT
i mm10.chr17               C 0 I 2
s canFam3.chr35            26360132 82 +  26524999 ACGGTGGCATTGTTAC----ATGTCTAGGTCCAATGAGAGCGGAGCCCGCATTACGGGTGAGGTTATTCTGAGACCTGTCTGCCTC-
i canFam3.chr35            C 0 C 0

a score=110030.000000
s hg38.chr6_GL000254v2_alt  1512235 16 +   4827813 AGGCATATTAGTAAAT
s panTro5.chr6             30380995 16 + 175400573 AGGCATATTAGTAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30615320 16 + 173848474 AGGCATATTAGTAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     323027 16 +   2037526 AGGCATATTAGTAAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74989490 16 + 122973662 AGGCATATTAGTAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30867680 16 + 172585720 AGGTGTATTAGTAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30157136 16 - 170955103 AGGTGTATTAGTAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     405964 16 +   1495729 AGGTGTATTAGTAAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     509816 16 -    863181 AGGTGTATTAGTAAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29656696 16 -  71996105 AGGTGTATTAGTAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     389619 16 -    735854 AGGTGTATTAGTAAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     295002 16 -   1829203 AGGTGTATTAGTAAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30493383 16 + 171630274 AAGCGTACTCACAGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           299787 16 +    515838 AGGTGTATTCACAAGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     930713 16 -   1771730 AGGCATATTCACAGGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     109681 16 -    486031 AGGCATATTCACAGGT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     218346 14 -   1411461 --CCATAGTATTATTT
i proCoq1.NW_012149775v1   C 0 I 3
s otoGar3.GL873550           344373  2 +  18854210 --CT------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58121969 16 -  94987271 CATTGTATTATTTAAA
i mm10.chr17               I 2 C 0
s canFam3.chr35            26360214 13 +  26524999 ---CACCTCAGTATGT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               385443  7 + 123392446 I

a score=5373060.000000
s hg38.chr6_GL000254v2_alt  1512251 351 +   4827813 GGAATGAGTCTTGG-ACCAGTTGCTCCCTATCCCTGTTAATCAATAATAAGTATATAGATGATCATCCTGGAAGCTATCTCTGA-------GCCCCTTCCTAACCATGTCTGCCT-----TT--TATCCCTTGAAGACTCAGATCGAAAGCAAGAAGCATCAGGTGGAAACAGCTTTTGAGAGGCTGCAGCAGGAGCTGGAGCAGCAGCGATGTCTCCTGCTGGCCAGGCTGAGGGAGCTGGAGCAGCAGATTTGGAAG--GAGAGGGATGAATATATCACAAAGGTCTCTGAGGAAGTCACCCGGCTTGGAGCCCAGGTCAAGGAGCTGGAGGAGAAGTGTCAGCAGCCAGCAAGTGAGCTTCTACA
s panTro5.chr6             30381011 352 + 175400573 GGAATGAGTCTTGGAACCAGTTACTCCCTATCCCTGTTAATCAATAATAAGTATATAGATGATCATCCTGGAAGCTATCTCTGA-------GCCCCTTCCTAACCGTGTCTGCCT-----TT--TATCCCTTGAAGACTCAGATCGAAAGTAAGAAGCATCAGGTGGAAACAGCTTTTGAGAGGCTGCAGCAGGAGCTGGAGCAGCAGCGATGTCTCCTGCTGGCCAGGCTGAGGGAGCTGGAGCAGCAGATTTGGAAG--GAGAGGGATGAATATATCACAAAGGTCTCTGAGGAAGTCACCCGGCTTGGAGCCCAGGTCAAGGAGCTGGAGGAGAAGTGTCAGCAGCCAGCAAGTGAGCTTCTACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30615336 352 + 173848474 GGAATGAGTCTTGGAACCAGTTACTCCCTATCCCTGTTAATCAATAATAAGTATATAGATGATCATCCTGGAAGCTATCTCTGA-------GCCCCTTCCTAACCATGTCTGCCT-----TT--TATCCCTTGAAGACTCAGATCGAAAGTAAGAAGCATCAGGTGGAAACAGCTTTTGAGAGGCTGCAGCAGGAGCTGGAGCAGCAGCGATGTCTCCTGCTGGCCAGGCTGAGGGAGCTGGAGCAGCAGATTTGGAAG--GAGAGGGATGAATATATCACAAAGGTCTCTGAGGAAGTCACCCGGCTTGGAGCCCAGGTCAAGGAGCTGGAGGAGAAGTGTCAGCAGCCAGCAAGTGAGCTTCTACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     323043 351 +   2037526 GGAATGAGTCTTGGAACCAGTTACTCCCTATCCCTGTTAATCAATAATAAGTATACAGATGATCATCCTGGAAGCTATCTCTGA-------GCCCCTTCCTAACCATGTCTGCCT-----TT--TATCCCTTGAAGACTCAGATCGAAAGCAAGAAGCATCAGGTGGAAACAGCTTTTGAGAGGCTGCAGCAGGAGCTGG-GCAGCAGCGATGTCTCCTGCTGGCCAGGCTGAGGGAGCTGGAGCAGCAGATTTGGAAG--GAGAGGGATGAATATATCACAAAGGTCTCTGAGGAAGTCACCCGGCTTGGAGCCCAGGTCAAGGAGCTGGAGGAGAAGTGTCAGCAGCCAGCAAGTGAGCTTCTACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74989506 352 + 122973662 GGAATAAGTTTTGGAACCAGTTACTCCCTATCCCTGTTAATCAATAATAAGTAAATAGATGATCATCCTGGAAGCTATCTCTGA-------GCCCCTTCCTAACCATGTCTGCCT-----TT--TATCCCTTGCAGACTCAGATTGAAAGCAAGAAGCATCAGGTGGAAACAGCTTTTGAGAGGCTGCAGCAGGAGCTGGAGCAACAGCAGTGTCTCCTGCTGGCCAGGCTGAGGGAGCTGGAGCAGCAGATTTGGAAG--GAGAGGGATGAATATATCACAAAGGTCTCTGAGGAAGTCACCCGGCTTGGAGCCCAGGTCAAGGAGCTGGAGGAGAAGTGTCAGCAGCCAGCAAGTGAACTTCTACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30867696 352 + 172585720 AGAATAAGTTTTGGAACTAGTTACTCTCTATCCCTGTTAATCAAGAACAAATATATGGATGATCATCCTGGAAGCTATCTCTGA-------GCCCCTTCCTAACCATGTCTACTT-----TT--TATCCCTTGCAGACTCAGATTGAAAACAAGAAGCATCAGGTGGAAGCAGCTTTTGAGAGGCTGCAGCAGGAGCTGGAGCAACAGCGGTGTCTCCTGCTGGCCAGGCTGAAGGAGCTGGAACAGCAGATTTGGAAG--GAGAGGGATGAATATATCACAAAGGTCTCTGAGGAAGTCACCCGGCTTGGAGCCCAGGTCAAGGAGCTGGAGGAGAAGTGTCAGCAGCCAGCAAGTGAGCTTCTACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30157152 352 - 170955103 AGAATAAGTTTTGGAACTAGTTACTCTCTATCCCTGTTAATCAAGAACAAATATATGGATGATCATCCTGGAAGCTATCTCTGA-------GCCCCCTCCTAACCATGTCTACTT-----TT--TATCCCTTGCAGACTCAGATTGAAAACAAGAAGCATCAGGTGGAAGCAGCTTTTGAGAGGCTGCAGCAGGAGCTGGAGCAACAGCGGTGTCTCCTGCTGGCCAGGCTGCGGGAGCTGGAACAGCAGATTTGGAAG--GAGAGGGATGAATATATCACAAAGGTCTCTGAGGAAGTCACCCGGCTTGGAGCCCAGGTCAAGGAGCTGGAGGAGAAGTGTCAGCAGCCAGCAAGTGAGCTTCTACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     405980 352 +   1495729 AGAATAAGTTTTGGAACTAGTTACTCTCTATCCCTGTTAATCAAGAACAAATATATGGATGATCATCCTGGAAGCTATCTCTGA-------GCCCCTTCCTAACCATGTCTACTT-----TT--TATCCCTTGCAGACTCAGATTGAAAACAAGAAGCATCAGGTGGAAGTAGCTTTTGAGAGGCTGCAGCAGGAGCTGGAGCAACAGCGGTGTCTCCTGCTGGCCAGGCTGCAGGAGCTGGAACAGCAGATTTGGAAG--GAGAGGGATGAATATATCACAAAGGTCTCTGAGGAAGTCACCCGGCTTGGAGCCCAGGTCAAGGAGCTGGAGGAGAAGTGTCAGCAGCCAGCAAGTGAGCTTCTACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     509832 352 -    863181 AGAATAAGTTTTGGAACTAGTTACTCTCTATCCCTGTTAATCAAGAACAAATATATAGATGATCATCCTAGAAGCTATCTCTGA-------GCCCCTTCCTAACCATGTCTACTT-----TT--TATCCCTTGCAGACTCAGATTGAAAACAAGAAGCATCAGGTGGAAGCAGCTTTTGAGAGGCTGCAGCAGGAGCTGGAGCAACAGCGGTGTCTCCTGCTGGCCAGGCTGCGGGAGCTGGAACAGCAGATTTGGAAG--GAGAGGGATGAATATATCACAAAGGTCTCTGAGGAAGTCACCCGGCTTGGAGCCCAGGTCAAGGAGCTGGAGGAGAAGTGTCAGCAGCCAGCAAGTGAGCTTCTACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29656712 352 -  71996105 AGAATAAGTTTTGGAACTAGTTACTCTCTATCCCTGTTAATCAAGAACAAATATATGGATGATCATCCTGGAAGCTATCTCTGA-------GCCCCTTCCTAACCATGTCTACTT-----TT--TATCCCTTGCAGACTCAGATTGAAAACAAGAAGCATCAGGTGGAAGCAGCTTTTGAGAGGCTGCAGCAGGAGCTGGAGCAACAGCGGTGTCTCCTGCTGGCCAGGCTGCAGGAGCTGGAACAGCAGATTTGGAAG--GAGAGGGATGAATATATCACAAAGGTCTCTGAGGAAGTCACCCGGCTTGGAGCCCAGGTCAAGGAGCTGGAGGAGAAGTGTCAGCAGCCAGCAAGTGAGCTTCTACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     389635 352 -    735854 AGAATAAGTTTTGGAACTAGTTACTCTCTATCCCTGTTAATCAAGAACAAATATATAGATGATCATCCTAGAAGCTATCTCTGA-------GCCCCTTCCTAACCATGTCTACTT-----TT--TATCCCTTGCAGACTCAGATTGAAAACAAGAAGCATCAGGTGGAAGCAGCTTTTGAGAGGCTGCAGCAGGAGCTGGAGCAACAGCGGTGTCTCCTGCTGGCCAGGCTGCGGGAGCTGGAACAGCAGATTTGGAAG--GAGAGGGATGAATATATCACAAAGGTCTCTGAGGAAGTCACCCGGCTTGGAGCCCAGGTCAAGGAGCTGGAGGAGAAGTGTCAGCAGCCAGCAAGTGAGCTTCTACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     295018 352 -   1829203 GGAATAAGTTTTGGAACTAGTTACTCTCCATCTGTGTTAATTAAGAACAAATATATAGATGATCATGCTGGAAGCTATCTCTGA-------GCCCCTTCCTAATCGTGTCTACTT-----TT--TATCCCTTGCAGATTCAGATTGAAAACAAGAAGCATCAGGTGGAAGCAGCTTTTGAGAGGCTGCAGCAGGAGCTGGAGCAACAGCGGTGTCTCCTGCTGGCCAGGCTGCAGGAGCTGGAACAGCAGATTTGGAAG--GAGAGGGATGAATATATCACAAAGGTCTCTGAGGAAGTTACCCGGCTTGGAGCCCAGGTCAAGGAGCTGGAGGAGAAGTGTCAGCAGCCAGCAAGTGAGCTTCTACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30493399 352 + 171630274 GGAATGAGTCTCAGAACTAGTTACTCCCTATTCCTGTTAATCAATAAGAAGTACATAGATGATCGTCCTGGTTGCTATCTCTGA-------GCCCTTTCCTAAACATGTCTGTCT-----TG--TATCCCTTGCAGACTCAGATTGAAAGCAAGAAGCATCAGGTGGAAACAGCTTTTGAGAGGCTGCAGCAGGAGCTGGTGCATCAGCGGTGTCTCCTGCTGGCCAGGCTGAGGGAACTGGAGCAGCAGATCCGGAAG--GAGAGGGATGAATACATCACAAAGGTCTCTGAGGAAGTCACCCGGCTTGGAGCCCAGGTCAAGGAGCTGGAGGAGAAGTGCCAGCAGCCAGCAAGTGAGCTTCTAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           299803 352 +    515838 GGAATGAGTCTTGGAACTAGTTACTCTCTATTCCTGTTAATCAATGAGAAGTACGTAGATGATCGTCCTGGATGCTATCTCTAA-------GCCCCTTCCTAACCATGTCTGTCT-----TT--TATCCCTTGCAGACTCAGATTGAAAGCAAGAAGCATCAGGTGGAAACCGCTTTTGAGAGGCTGCAGCAAGAGCTGGAGCATCAGCGGTGTCTCCTGCTGGCCAGGCTGAGGGAGCTGGAGCAGCAGGTCCGGAAG--GAGAGGGATGAATATATCACAAAGGTCTCTGAGGAAGTCACCCGGCTTGGAGCCCAGGTCAAGGAGCTGGAGGAGAAGTGCCAGCAGCCAGCAAGTGAGCTTCTAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     930729 351 -   1771730 GGAATGAGTC-CGGAACTAGTTACTCCCTATTCCTGTTAATCAATAAGAAGTACATAGATGATCATCCTGGGCACTATCTCTGA-------GCCCCTTCCTAACCATGTCTGTCT-----TT--TATCCCTTGCAGGCTCAGATTGAAAGCAAGAAGCATCAGGTGGAAACAGCTTTTGAGAGGCTGCAGCAGGAGCTGGAGTACCAGCAGTGTCTCCTGCTGGCCAGGCTGAGGGAACTAGAGCAGCAGATCCGGAAG--GAGAGGGATGAATACATCACAAAGGTCTCTGAGGAAGTCACCCGGCTTGGGGCCCAGGTCAAGGAGCTGGAGGAGAAGTGCCAGCAGCCAGCAAGTGAGCTTCTAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     109697 352 -    486031 GGAATGAGTCTTGGAACTAGTTACCCCCTATTCCTGTAAATCAATAAGAAGTGCATAGATGATCATCCTGGACGCTATCTCTGA-------GCCCCTTCCTAACCATGTCTGTCT-----TT--TATCCCTTGCAGACTCAGATTGAAAGCAAGAAGCATCAGGTGGAAACAGCTTTTGAGAGGCTGCAGCAGGAGCTGGAGCATCAGCGGTGTCTCCTGCTGGCCAGGCTGAGGCAACTGGAGCAGCAGATCCGGAAG--GAGAGGGATGAATACATCACAAAGGTCTCTGAGGAAATCACCCGGCTTGGAGCCCAGGTCAAGGAGCTGGAGGAGAAGTGCCAGCAACCAGCAAGTGAGCTTCTAAA
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               385450 352 + 123392446 GGAATGAGTCTGAGGACAAGTTGCTCCCTGTCCCCTTTAATCAATAATAAGGATATAGATGACCCTCCTGGAAGCCAGCTCTGA-------G-CCCTTGCTAAGCACGTCTGCCC-----TTC-CACCCCTTGCAGACGCAGACCGAAAGCAAGAAGCACCAGGTAGAAGCAGCCGCTGAGACGCCGCAGAAGGACCCGAGGGAACAGCGGTGCCTCCTGCTGGCCAGGCTGAGGTGGCCAGAGCAGCAGATTTGGAAG--GGGAGGGATGAGGACATCACACAGGTCTCTGAAGAGGCCACCCGGCTTGGAGCCCAGGTCAAAGAGCTGGAGCAGAAGTGTCAGCAGCCAGCAAGTGAGCTTGTACA
i micMur3.chr6             I 7 C 0
s proCoq1.NW_012149775v1     218363 339 -   1411461 GGGATGAGTCTTAGGATGAGTTGCTCCCTATCCCTCTTAATCAACAATAAGGGTATAGATGACCTTCCTGGAAGCTAGCTCTGA-------GCCCCTTGCTAACCACGTCTGCCC-----TTCTTTCCCCTTGCAGACTCACATTGAAAGCA-------------AGAAGCAGCTTCTGAGACGCTGCAGCAGGCCCTGAGGGAACAGCGGCGTCTCCTGCTGGCCAGGCTGAGGGAGCTAGAGCAGCGGATTTGGAAG--CAGAGGGACGAGTACATCACAAAGGTTTCCGAGGAGGCCA-CCGGCTTGAAGCCCAGGTCACA-AACTGGAGCAGAAGTATCAGCAGCCAACAAGTGAGCTTGTACA
i proCoq1.NW_012149775v1   I 3 I 43
s otoGar3.GL873550           344375 337 +  18854210 ATAAGGTGTCTTGGAACAAGTTGTTCCCTATCTCTCCTAATGAATAATAA---TATAGATGATCCTCCCAGAAGCTAGCTCTGA-------GCCCCT----------GTCTGTCC---------TACCCCTTGCAGGCTAAGATTGAAAACAAGAAGCAACAGATAGAAGCAGCTTTTGAGAGGCTGGAGCAGGACCTGAAGGAACAGCGGTGTCTCCTGCTGGCCAGGCTGAGAGAGCTAGAGAAGCAGATTTGGAAG--GAGAAGAATGAGTACATCACAAAGGTCTCTGAGGAGGTTGCTCAGCTTGGAGCCCAGGTTACAGAGCTGGAGGAGAAGTGTCAGCAGCCAGCAAGCGAGCTTTTACA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58121985 325 -  94987271 GAAATGAGTCCTGTAATGGCTTACTC-CTGTCTCT---------TAATAAGTACACAGATGATCCTTATGGGAGCCAGTTCTGA-------GCCTCCCCCA-----------------------TAT-CCTCACAGATGCAGGTTGAAAGCAAAAAGCATCAGGTAGAAGCTGCTTTTGAAAGGCTGAAGCGGGAGCTTGTGGACCAGAGATGCCTCCTGCTGAACAGGCTGGAGGAACTAGAACGGCAGATCTGCAAG--GAGAGGGAAGAGTACATCAGCAAAGTCTCCCAGGAGGTCGACCGGCTGAGTACCCAGGTGGAGGAGCTAGAGGAGAAGTGTCAGCAACCAGCAAGTGAGCTTCTGCA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26360227 346 +  26524999 -----GAG----AGAGCTGGTTACTCCCTGTC--------TGAATAGTGAATATATAGGTGATCTTCCTGACACCAATTTCTTACACTATGACCAGCTTCTGGCCATGTCTGTCTGTCTGTC--TACCCCTTACAGACTCAGATTGACGGCAAGAAGCGGCAGGTAGCAGCAATGTTCGAGATGCTGCGGCAGGAGCTGGTGGAGCAGCAGGATGTCCTGGTGGCCCAGCTTAGGGAGCTGGAGCTGCAGATCTGGCAGGAGAGAGAGATGAATACATCTCAGAGGTCTCTGAGGAGGTCACCAGGCTCAGAGCCAAGGCCAAGGAGCTGG---AGAAGTGTCAGCAGCCGGCGAGTGCCCTGCTCCA
i canFam3.chr35            C 0 C 0

a score=177883.000000
s hg38.chr6_GL000254v2_alt  1512602 12 +   4827813 AGTGAGAGACAC
s panTro5.chr6             30381363 12 + 175400573 AGTGAGAGACAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30615688 12 + 173848474 AGTGAGAGACAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     323394 12 +   2037526 AGTGAGAGACAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74989858 12 + 122973662 AGTGAGAGACAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868048 12 + 172585720 AGTGAGAGACAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30157504 12 - 170955103 AGTGAGAGACAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     406332 12 +   1495729 AGTGAGAGACAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     510184 12 -    863181 AGTGAGAGACAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657064 12 -  71996105 AGTGAGAGACAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     389987 12 -    735854 AGTGAGAGACAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     295370 12 -   1829203 AGTGAGAGACAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30493751 12 + 171630274 AGTGAGAGACAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           300155 12 +    515838 AGTGAGAGACAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     931080 12 -   1771730 AGTGAGAGACAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     110049 12 -    486031 AGTGAGAGACAC
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               385802 12 + 123392446 AGGGAGGGACAC
i micMur3.chr6             C 0 I 138
s otoGar3.GL873550           344712 12 +  18854210 AGTGAGAGACAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58122310 12 -  94987271 AGTAAGAGACTC
i mm10.chr17               C 0 I 6
s canFam3.chr35            26360573 10 +  26524999 GGTGAGACTG--
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012149775v1     218702 43 -   1411461 I

a score=477125.000000
s hg38.chr6_GL000254v2_alt  1512614 51 +   4827813 TTCACCACTTTGTAGGATAAGAGAGGGACTCCACG----------GGGAAGGGG-------GTGGGCA
s panTro5.chr6             30381375 51 + 175400573 TTCACCACTTTGTAGGATAAGAGAGGGACTCCACG----------GGGAAGGGG-------GTGGGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30615700 51 + 173848474 TTCACCACTTTGTAGGATAAGAGAGGGACTCCACG----------GGGAAGGGG-------GTGGGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     323406 51 +   2037526 TTCACCACTTTGTAGGATAAGAGAGGGACTCCACG----------GGGAAGGGG-------GTGGGCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74989870 51 + 122973662 CTCACCACTTTGTGGGATAGGAGAGGGACTCCACG----------GGGAAAGGG-------GTGGGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868060 51 + 172585720 CTTATTACTTCATGTGATAGGAGAGGGACTCCACG----------GGGAAGGGG-------GTGGGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30157516 51 - 170955103 CTTATTACTTCATGTGATAGGAGAGGGACTCCACG----------GGGAAGGGG-------GTGGGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     406344 51 +   1495729 CTTATTACTTCATGTGATAGGAGAGGGACTCCCTG----------GGGAAGGGG-------GTGGGCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     510196 51 -    863181 CTTATTACTTCATGTGATAGAAGAGGGACTCCACG----------GGGAAGGGG-------GTGGGCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657076 51 -  71996105 CTTATTACTTCATGTGATAGGAGAGGGACTCCACG----------GGGAAGGGG-------GTGGGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     389999 51 -    735854 CTTATTACTTCATGTGATAGAAGAGGGACTCCACG----------GGGAAGGGG-------GTGGGCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     295382 51 -   1829203 ATTATTACTTCATATGATAGGACAGGGACTCCACG----------GGGAAGGGG-------GTGGGCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30493763 49 + 171630274 CTCA-CACTTCGTGGGATAGGAGAGGGACTCCAC-----------AGGAAGGGG-------GTGGGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           300167 49 +    515838 CTCA-CACTTTGTGGGATAGGAGTGGGACTCCAT-----------GGGAAGGAG-------GTGGGCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     931092 49 -   1771730 CTCA-CACTTGGTGGGATAGGAGTGGGACTCCAT-----------GGGAAGGGG-------GTGGGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     110061 49 -    486031 CTCA-CACTTCGTGGGATAGGAGTGGGACTCCAT-----------GGGAAGGGG-------GTGGGCA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           344724 45 +  18854210 CCCACCACTTCATAGGATA-GAGAAGGACTCCAG-----------GGGAAAGGG-------GTG----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58122328 61 -  94987271 CCTACCACCTAGTGCGACAGCAGAGGGTTTACAGGAAGCAGGTGCTGGAAGGTG-------ATGGGGA
i mm10.chr17               I 6 C 0
s canFam3.chr35            26360583 55 +  26524999 CCTACTGAGTCATGGGCTTGGGGAGGGTTTGCAC-----------AGGAGGGGACACCCCTGAGGG--
i canFam3.chr35            C 0 C 0
e micMur3.chr6               385814 138 + 123392446 I
e proCoq1.NW_012149775v1     218702 43 -   1411461 I

a score=547300.000000
s hg38.chr6_GL000254v2_alt  1512665 42 +   4827813 CCATGCTTTGGGCTGGAGAGAGGCAGGAAAGGGAAGTGGAGA-------------------------------------------------
s panTro5.chr6             30381426 42 + 175400573 CCATGCTTTGGGCTGGAGAGAGGCAGGAAAGGGAAGTGGAGA-------------------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30615751 42 + 173848474 CCATGCTTTGGGCTGGAGAGAGGCAGGAAAGGGAAGTGGAGA-------------------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     323457 42 +   2037526 CCATGCTTTGGGCTGGAGAGAGGCAGGAAAGGGAAGTGGAGA-------------------------------------------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74989921 42 + 122973662 CCATGCTGTGGGCTGGAGAGAGGCAGGAAAGGGAAGTGGAGA-------------------------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868111 42 + 172585720 CCATGCTGTGGGCTGGAGAGAGGCAGGAAAGGGAAGTGGAGA-------------------------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30157567 42 - 170955103 CCATGCTGTGGGCTGGAGAGAGGCAGGAAAGGGAAGTGGAGA-------------------------------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     406395 42 +   1495729 CCATGCTGTGGGCTGGAGAGAGGCAGGAAAGGGAAGTGGAGA-------------------------------------------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     510247 42 -    863181 CCATGCTGTGGGCTGGAGAGAGGCAGGAAAGGGAAGTGGAGA-------------------------------------------------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657127 42 -  71996105 CCATACTGTGGGCTGGAGAGAGGCAGGAAAGGGAAGTGGAGA-------------------------------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     390050 42 -    735854 CCATGCTGTGGGCTGGAGAGAGGCAGGAAAGGGAAGTGGAGA-------------------------------------------------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     295433 42 -   1829203 CCATGCTGTGGGCTGGAGAGAGGCAGGAAAGGGAAGTGGAAA-------------------------------------------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30493812 42 + 171630274 CCATGCTGTGGGCTGGAAAGAGGCAGAAAAGGGAAGTGGAGA-------------------------------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           300216 42 +    515838 CCACGCTGTGGGCTGGAGAGAGGCAGAAAAGGGAAGTGGAGA-------------------------------------------------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     931141 42 -   1771730 CCACGCTGTGGGCTGGAGAGAGGCAGAAAAGGGAAGTCGAGA-------------------------------------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     110110 42 -    486031 CCACGCTGTGGGCTGGAGAGAGGCAAAAAAGGCAAGTGGAGA-------------------------------------------------
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     218745 42 -   1411461 CCATACTCTGGGCTGCAGAGAGGCAGGAGAGGGAAGTGGAGA-------------------------------------------------
i proCoq1.NW_012149775v1   I 43 I 64
s otoGar3.GL873550           344769 42 +  18854210 CCATGTGATGGGCTGGAGAGAGGCAGGAGAGGGAAGTGGAGA-------------------------------------------------
i otoGar3.GL873550         C 0 I 40
s mm10.chr17               58122389 39 -  94987271 ---TTACCTCGATTGAGAAGGTGTGTGTGGGGGGAGGGGGGT-------------------------------------------------
i mm10.chr17               C 0 I 2
s canFam3.chr35            26360638 89 +  26524999 CCAGAAGAT--GCTGGGGAAAGGCAGGAGGGGGAAGCACAGGTTGTTTCTGGTGGGAAGAAAGTAGAGCAGTTGGGTTCCTTTGGCCCAGA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               385814 138 + 123392446 I

a score=123597.000000
s hg38.chr6_GL000254v2_alt  1512707 13 +   4827813 GAGGTTAACGGGG
s panTro5.chr6             30381468 13 + 175400573 GAGGTTAAGGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30615793 13 + 173848474 GAGGTTAAGGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     323499 13 +   2037526 GAGGTTAAGGGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74989963 13 + 122973662 GAGGTTAAGGGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868153 13 + 172585720 GAGGTTAAGGGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30157609 13 - 170955103 GAGGTTAAGGGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     406437 13 +   1495729 GAGGTTAAGGGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     510289 13 -    863181 GAGGTTAAGGGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657169 13 -  71996105 GAGGTTAAGGGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     390092 13 -    735854 GAGGTTAAGGGAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     295475 13 -   1829203 GAGGTTAAGGGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30493854 10 + 171630274 ---GTTATGGGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           300258 13 +    515838 GAGGTTatgggga
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     931183 13 -   1771730 GAGGTTATGGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     110152 13 -    486031 GAGGTTATGGGGA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           344851 13 +  18854210 GAGGTTATGGAGA
i otoGar3.GL873550         I 40 C 0
s mm10.chr17               58122430 11 -  94987271 GCTTTTTATGG--
i mm10.chr17               I 2 C 0
s canFam3.chr35            26360727 13 +  26524999 GAGTTTACAGACA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               385814 138 + 123392446 I
e proCoq1.NW_012149775v1     218787 64 -   1411461 I

a score=154166.000000
s hg38.chr6_GL000254v2_alt  1512720 11 +   4827813 TGCAGATCCAG
s panTro5.chr6             30381481 11 + 175400573 TGCAGATCCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30615806 11 + 173848474 TGCAGATCCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     323512 11 +   2037526 TGCAGATCCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74989976 11 + 122973662 TGCAGACCCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868166 11 + 172585720 TGCAGACCCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30157622 11 - 170955103 TGCAGACCCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     406450 11 +   1495729 TGCAGACCCAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     510302 11 -    863181 TGCAGACCCAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657182 11 -  71996105 TGCAGACCCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     390105 11 -    735854 TGCAGACCCAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     295488 11 -   1829203 TGTAGACCCAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30493864 11 + 171630274 TGCAGACCCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           300271 11 +    515838 tgcagacccag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     931196 11 -   1771730 TGCAGACCCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     110165 11 -    486031 TGCAGACCCAG
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               385952 11 + 123392446 TGCAGACCCAG
i micMur3.chr6             I 138 C 0
s otoGar3.GL873550           344864 11 +  18854210 TATGGATCCAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58122441  4 -  94987271 ------CTCA-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26360740 11 +  26524999 CGCAGACCCAG
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012149775v1     218787 64 -   1411461 I

a score=2028296.000000
s hg38.chr6_GL000254v2_alt  1512731 135 +   4827813 AGGGGCTGGAGACTT-----GCCCAAGTCATACACTGTGGTCATGTTAAggggtttagggtcagacagtcttggatttg--aatgttggctcttccaattgtgtgacttgagtgagtctcttagcctctctaaacatgggga
s panTro5.chr6             30381492 135 + 175400573 AGGGGCTGGAGACTT-----GCCCAAGTCATACGCTGTGGTCATGTTAAgggctttagggttagacagtcttggatttg--aatgttggctcttccaattgtgtgacttgagtgagtctcttagcctctctaaacatgggga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30615817 135 + 173848474 AGGGGCTGGAGACTT-----GCCCAAGTCATACGCTGTGGTCATGTTAAgggctttagggtcagacagtcttggatttg--aatgttggctcttccaattgtgtgacttgagtgagtctcttagcctctctaaacatgggga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     323523 135 +   2037526 AGGGGCTGGAGACTT-----GCCCAAGTCATACACTGTGGTCATGTTAAgggctttagggtcagacagtcttggatttg--aatgttggctcttccaattgtgtgacttgagtgagtctcttagcctctctaaacatggcga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74989987 135 + 122973662 AGGGGCTGGAGACTT-----GCCCAAGTCATACACTGTGGTCATGTTAAgggctttagggtcagaaagtcttggatttg--aatgttggctcttccaattgtgtgacttgagtgagtctcttaacctctctaaacatgggaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868177 135 + 172585720 AGGGGCTGGAGAATT-----GCCCAAGTCATACACTGTGGTCATGTTAAgggctttagggtcagacagtcttggatttg--aatgttggctcttccaatcgtgtgacttgactgagtctcttaacctctctaagcatgggga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30157633 135 - 170955103 AGGGGCTGGAGAATT-----GCCCAAGTCATACACTGTGGTCATGTTAAgggctttagggtcagacagtcttggatttg--aatgttggctcttccaatcgtgtgacttgactgagtctcttaacctctctaagcatgggga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     406461 135 +   1495729 AGGGGCTGGAGAATT-----GCCCAAGTCATACACTGTGGTCATGTTAAgggctttagggtcagacagtcttggatttg--aatgttggctcttccaatcgtgtgacttgactgagtctcttaacctctctaagcatgggga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     510313 135 -    863181 AGGGGCTGGAGAATT-----GCCCAAATCATACACTGTGGTCATGTTAAgggctttagggtcagacagtcttggatttg--aatgttggctcttccaatcgtgtgacttcactgagtctcttaacctctctaagcatgggga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657193 135 -  71996105 AGGGGCTGGAGAATT-----GCCCAAGTCATACACTGTGGTCATGTTAAgggctttagggtcagacagtcttggatttg--aatgttggctcttccaatcgtgtgacttgactgagtctcttaacctctctaagcatgggga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     390116 135 -    735854 AGGGGCTGGAGAATT-----GCCCAAATCATACACTGTGGTCATGTTAAgggctttagggtcagatagtcttggatttg--aatgttggctcttccaatcgtgtgacttgactgagtctcttaacctctctaagcatgggga
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     295499 135 -   1829203 AGGGGCTGGAGAATT-----GCCCAAGTCATACACTGTGGTCATGTTAAgggctttagggtcagacagccttggatttg--aatgttggctcttctaatcatgtgacttgactgagtctcttaacctctctaagcatgggga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30493875 135 + 171630274 AGGGGCTGGAGACTT-----GCCCAAGTCATACAATGTGGTCATGTTAAgggctttagggtcagacagtcttggatttg--aatgttggctcttccagttgtgtgactcaagagagtctcttaagctctctaaacatgggga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           300282 135 +    515838 agtggctggagactt-----gcccaagtcatacaatgtggtcatgttaagggctttagggtcagacagtcttagcttta--aatgttcgctcttcccattgtgtgacttgagtgagtctcttaaactctctaaacatgggga
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     931207 135 -   1771730 AGGGGCTGGAGACTT-----GCCCAagtgatacaatgtggtcatgttaagggctttagggtcagacagtcttggatttg--aatgttggctcttccagttgtgtgacttgagtgagtctcttaagctctctaaacatgggga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     110176 135 -    486031 AGGGACTGGAGACTT-----GCCCAAGTCATACAACGTGGTCATGTTAAgggctttagggtcagacagtcttggatttg--aatgttggctcttccaactgtgtgacttgagtgagtctcttaagctctctaaacatgggga
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               385963 133 + 123392446 AGGGGCTAGAGACTT-----GCCCTAGCCATA-ACTGTGGTCATGTTGAggct-ttggggtcagacagtcttgggtttg--agtgtcagctcttccaactgtgcgacttaggtgacactcttaacctctctaaacgtgggga
i micMur3.chr6             C 0 I 275
s proCoq1.NW_012149775v1     218851 134 -   1411461 AGGGGCTAGAGACTT-----GCCCAAGCCATATACTGTGGTCATgttaagggc-atggggtcagacagtctgggatttg--agtgtcagctcttccaactgtgtgacttaggtgactctcttaacctctctaaacatgggga
i proCoq1.NW_012149775v1   I 64 C 0
s otoGar3.GL873550           344875 140 +  18854210 AGGTCTTGGAGACTTATATGGTCCAGGCCATATACTGTGGTCATGCTAAgggctttgggatcagacagtcttgggtgtg--agtgtcagctcttctaatcatgtgtcttgggtaaatctcttgacctctttaaacatgggga
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58122445 137 -  94987271 AAAAACTAGAGAACT-----TCCCAAGGCATGCACGAGGATTATGCAAAGATGGCCATCATCAGACCATCTTGAGTTTGGTGTTGTCAGCCCCTCCCACTTTGTCACTTGGGTGACTCTCTTAGTTTCTCTAAGCATGGGAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26360751 128 +  26524999 GAAGGATGGA----T-----GGCCTGCTCACCCACTGTATCCACGTcaaggactttggagtcagagggcctcgggtttg--agtgt-ggctctcccagccgtgtgaccttggtgagcctcgtgac--ccctacccatggggg
i canFam3.chr35            C 0 C 0

a score=9179.000000
s hg38.chr6_GL000254v2_alt  1512866 2 +   4827813 ca
s panTro5.chr6             30381627 2 + 175400573 ca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30615952 2 + 173848474 ca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     323658 2 +   2037526 ca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74990122 2 + 122973662 ca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868312 2 + 172585720 ca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30157768 2 - 170955103 ca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     406596 2 +   1495729 aa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     510448 2 -    863181 ca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657328 2 -  71996105 aa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     390251 2 -    735854 ca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     295634 2 -   1829203 ca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30494010 2 + 171630274 cg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           300417 2 +    515838 cg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     931342 2 -   1771730 tg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     110311 2 -    486031 tg
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     218985 2 -   1411461 ta
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           345015 2 +  18854210 ta
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58122582 2 -  94987271 GA
i mm10.chr17               C 0 I 23
s canFam3.chr35            26360879 2 +  26524999 ta
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386096 275 + 123392446 I

a score=223505.000000
s hg38.chr6_GL000254v2_alt  1512868 18 +   4827813 gcaatagcacctccctca
s panTro5.chr6             30381629 18 + 175400573 gcaatagcacctccctca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30615954 18 + 173848474 gcaatagcacctccctca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     323660 18 +   2037526 gcaatagcacctccctca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74990124 18 + 122973662 acaatagcacctccctca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868314 18 + 172585720 acaatagcacctccctca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30157770 18 - 170955103 acaatagcacctccctca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     406598 18 +   1495729 acaatagcacctccctca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     510450 18 -    863181 acaatagcacctccctca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657330 18 -  71996105 acaatagcacctccctca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     390253 18 -    735854 acagtagcacctctctca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     295636 18 -   1829203 acaatagcacctccctca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30494012 17 + 171630274 a-aatagcacctcccgca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           300419 17 +    515838 acaatagcatctcct-ca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     931344 18 -   1771730 acaacagcacctccctca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     110313 18 -    486031 acaatagcacctccctca
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     218987 18 -   1411461 atagtagcacctccctca
i proCoq1.NW_012149775v1   C 0 I 3760
s otoGar3.GL873550           345017 18 +  18854210 ataatagcaaccctctcc
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26360881 18 +  26524999 atcatagcatgtccctca
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386096 275 + 123392446 I
e mm10.chr17               58122584 23 -  94987271 I

a score=164749.000000
s hg38.chr6_GL000254v2_alt  1512886 17 +   4827813 taaagttattgc-aaaat-
s panTro5.chr6             30381647 17 + 175400573 taaagttattgc-aaaat-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30615972 17 + 173848474 taaagttattgc-aaaat-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     323678 17 +   2037526 taaagttattgc-aaaat-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74990142 17 + 122973662 taaagttgttgc-agaat-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868332 17 + 172585720 taaagttgttgc-agaat-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30157788 17 - 170955103 taaagttgttgc-agaat-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     406616 17 +   1495729 caaagttgttgc-agaat-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     510468 17 -    863181 taaagttgttgc-agaat-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657348 17 -  71996105 caaagttgttgc-agaat-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     390271 17 -    735854 taaagttgttgc-agaat-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     295654 17 -   1829203 taaagttgttgc-agaat-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30494029 17 + 171630274 ttaagttgttgc-aaact-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           300436 17 +    515838 taaagttgttgc-aaact-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     931362 17 -   1771730 taaagttgttgc-aaact-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     110331 17 -    486031 taaagttgttgc-aaact-
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           345036 18 +  18854210 taggattatcataaaaat-
i otoGar3.GL873550         I 1 C 0
s canFam3.chr35            26360899 18 +  26524999 cagagccgttgc-agagat
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386096 275 + 123392446 I
e mm10.chr17               58122584 23 -  94987271 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I

a score=1348063.000000
s hg38.chr6_GL000254v2_alt  1512903 116 +   4827813 tataagaaacaatccataaaaaatgcttggcatgattcctgatatacagaaagaac----tcaataactggtgtctgctatGGTTATGAATATGTGATCC----TGGCT-----------CACATCAGGTCCAGC
s panTro5.chr6             30381664 116 + 175400573 tataagaaacaatccataaaaaatgcttggcatgattcctgatatacagaaagaac----tcaataaccggtgtctgctatGGTTATGAATATGTGATCC----TGGCT-----------CACATCAGGTCCAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30615989 116 + 173848474 tataagaaacaatccataaaaaatgcttggcatgattcctgatatacagaaagaac----tcaataactggtatctgctatGGTTATGAATATGTGATCC----TGGCT-----------CACATCAGGTCCAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     323695 116 +   2037526 tataagaaacaatccataaaaaatgcttggcatgattcctgatatacagaaagaac----tcaataactggtgtctgctatGGTTATGAATATGTGATCC----TGGCT-----------CACATCAGGTCCAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74990159 116 + 122973662 tataagaaacaatccatataaaatgcttggcatggttcctggtatacagaaagaac----tcaataactggtgtctgctatGGTTATGAATATGTGATCC----TGGCT-----------CACATCAGGTCCAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868349 131 + 172585720 tataagaaacaatccatataaaatgcttggcatggttactggtacacagaaagaac----tcaataactggtGTCTGCTGTGGTTATGAATATGTGATCTGCTGTGGTTATGAATATGTGAATATCAGGTCCAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30157805 131 - 170955103 tataagaaacaatccatataaaatgcttggcatggttactggtacacagaaagaac----tcaataactggtGTCTGCTGTGGTTATGAATATGTGATCTGCTGTGGTTATGAATATGTGAATATCAGGTCCAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     406633 116 +   1495729 tataagaaacaatccatataaaatgcttggcatggttactggtacacagaaagaac----tcaataactggtgtctgctatGGTTATGAATATGTGATCC----TGGTT-----------CATATCAGGTCCAGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     510485 116 -    863181 tataagaaacaatccatataaaatgcttggcatggttactgatacacagaaagaac----tcaataactggtGTCTGCTGTGGTTATGAATATGTGATCC----TGGTT-----------CATATCAGGTCCAGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657365 116 -  71996105 tataagaaacaatccatataaaatgcttggcatggttaccggtacacagaaagaac----tcaataactggtGTCTGCTGTGGTTATGAATATGTGATCC----TGGTT-----------CATATCAGGTCCAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     390288 116 -    735854 tataagaaacaatccatataaaatgcttggcatggttactggtacacagaaagaac----tcaataactggtGTCTGCTGTGGTTATGAATATGTGATCC----TGGTT-----------CATATCAGGTCCAGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     295671 116 -   1829203 tataagaaacaatccacgtaaaatgcttggcatggttactggtacacagaaagaac----tcaataactggtGTCTGCTGTGGTTATGAATATGTGATCC----TGGTT-----------CATATCAGGTCCAGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30494046 116 + 171630274 tataagaaacagtccatataaaatgcttaacatggcccctggtacatagaaagaac----tcaataactgatGTCTGCTGTGGTTATGAATATGTGATCC----CGGTT-----------CACATCAGGTTCAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           300453 116 +    515838 tataagaaacaatccatataaaacgcttagcatggtccctggtgcacagaaagaac----tcaataactggtGTCTGCTGTGGTTATGAATATGTGATCC----CGGTT-----------CACATCAGGTTCAGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     931379 112 -   1771730 tat----aacattccatataaaatgcttagcatggtccctggtacatagaaaaaac----tcaataactgatGTCTGCTGTGGTGATGAATATGTGATCC----CGGTT-----------CACATCAGGTTCAGC
i cebCap1.NW_016107755v1   C 0 I 19
s aotNan1.NW_018496901v1     110348 116 -    486031 tacaagaaacaatccatataaaatgcttagcatggtccctggtacacagaaagaac----tcagtaactgatGTCTGCTGTGGTTATGAATATGTGATCC----CGGTT-----------CACATCAGGTTCAGC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           345054 111 +  18854210 tataagaaataatccatataaaatgcttagcagggtccctggtacacaaagagaac----tcaataaatggtGCCTGCTGTGGTTATTGTTATGTGATAT--------------------CACATCAGACCCAGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58122607 109 -  94987271 TGTAAGGAATAACCCATGTGTGGTGCTGAGCATGGTCCCCAATACACAGGAAGAGCACCATCAATATC------CTTGTGTGGTTACCA-----CAATCC----TGCCC-----------CACATCGGTGCCAAC
i mm10.chr17               I 23 I 1
s canFam3.chr35            26360917 114 +  26524999 gataagaggcaat-catgccaggtgcatagcgtgctccctggctcacagacagaac----tctgtaaacagcatctgttgtGATTCTCATCATCTTGTCG----TGTTT-----------CACATCAG-TCTGGC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386096 275 + 123392446 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I

a score=59138.000000
s hg38.chr6_GL000254v2_alt  1513019 6 +   4827813 TGATAA
s panTro5.chr6             30381780 6 + 175400573 TGATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30616105 6 + 173848474 TGATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     323811 6 +   2037526 TGATAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74990275 6 + 122973662 TGATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868480 6 + 172585720 TAATAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30157936 6 - 170955103 TAATAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     406749 6 +   1495729 TGATAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     510601 6 -    863181 TGATAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657481 6 -  71996105 TGACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     390404 6 -    735854 TGATAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     295787 6 -   1829203 TGATAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30494162 6 + 171630274 TGATAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           300569 6 +    515838 TGATAA
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496901v1     110464 6 -    486031 TGATAA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           345165 6 +  18854210 TGACAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58122717 5 -  94987271 TGGAA-
i mm10.chr17               I 1 C 0
s canFam3.chr35            26361031 6 +  26524999 TGCTAA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386096 275 + 123392446 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I
e cebCap1.NW_016107755v1     931491 19 -   1771730 I

a score=166975.000000
s hg38.chr6_GL000254v2_alt  1513025 17 +   4827813 CTG----AAGGCAGGCCCCTG
s panTro5.chr6             30381786 17 + 175400573 CTG----AAGGCAGGCCCCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30616111 17 + 173848474 CTG----AAGGCAGGCCCCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     323817 17 +   2037526 CTG----AAGGCAGGCCCCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74990281 17 + 122973662 CTG----AAGGCAGGCCCCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868486 17 + 172585720 CTG----AAGACAGGCCCCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30157942 17 - 170955103 CTG----AAGACAGGCCCCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     406755 17 +   1495729 CTG----AAGACAGGCCCCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     510607 17 -    863181 CTG----AAGACAGGCCCCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657487 17 -  71996105 ATG----AAGACAGGCCCCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     390410 17 -    735854 CTG----AAGACAGGCCCCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     295793 17 -   1829203 ATG----AAGACAGGTCCCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30494168 21 + 171630274 CTGATGCAAGGCAGGTCCCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           300575 17 +    515838 CTG----AAGGCAGGTCCCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     931510 17 -   1771730 CTG----AAGGCAGGTCCCTG
i cebCap1.NW_016107755v1   I 19 C 0
s aotNan1.NW_018496901v1     110470 17 -    486031 CTG----AAGGCAGGTCCCTG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           345171 17 +  18854210 CTC----AAGGCTGACCCCTG
i otoGar3.GL873550         C 0 I 219
s mm10.chr17               58122722 16 -  94987271 -----CTCAGACTGGTCTCTG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26361037  2 +  26524999 ------------------CT-
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386096 275 + 123392446 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I

a score=256160.000000
s hg38.chr6_GL000254v2_alt  1513042 23 +   4827813 CTCTCTAC---------------------------------------------------------CACCTCCTAATCATT
s panTro5.chr6             30381803 23 + 175400573 CTCTCTAC---------------------------------------------------------CACCTCCTAATCATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30616128 23 + 173848474 CTCTCTAC---------------------------------------------------------CACCTCCCAATCATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     323834 23 +   2037526 CTCTCTAC---------------------------------------------------------CACCTCCTAATCATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74990298 23 + 122973662 CTCTCTAC---------------------------------------------------------CACCTCCTAATCCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868503 23 + 172585720 CTCTCCAC---------------------------------------------------------CACCTCCTAATCATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30157959 23 - 170955103 CTCTCCAC---------------------------------------------------------CACCTCCTAATCATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     406772 23 +   1495729 CTCTCCAC---------------------------------------------------------CACTTCCTAATCACT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     510624 23 -    863181 CTCTCCAC---------------------------------------------------------CACCTCCTAATCATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657504 23 -  71996105 CTCTCCAC---------------------------------------------------------CACCTCCTAATCATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     390427 23 -    735854 CTCTCCAC---------------------------------------------------------CACCTCCTAATCATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     295810 23 -   1829203 CTCTCCAC---------------------------------------------------------CACCTCCTAATCATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30494189 23 + 171630274 CTCTCCAC---------------------------------------------------------CACCTCCTAATCACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           300592 23 +    515838 CTCTCCAC---------------------------------------------------------CACCTCCTAATCACT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     931527 23 -   1771730 CTCTCCAC---------------------------------------------------------CACCTCCTAATCACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     110487 23 -    486031 CTCTCCAC---------------------------------------------------------CACCTCCTAATCACT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           345407 80 +  18854210 ccctccacccttggtatatgggcaggcaccctgcccactgagccacaggcaccacccTTTACCATCACTTTTTAAAGGTT
i otoGar3.GL873550         I 219 C 0
s mm10.chr17               58122738 23 -  94987271 CTCTCTAT---------------------------------------------------------CATTTCTTAATCACT
i mm10.chr17               C 0 I 21
s canFam3.chr35            26361039 18 +  26524999 -----CAC---------------------------------------------------------CACCTCTCACACACC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386096 275 + 123392446 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I

a score=336569.000000
s hg38.chr6_GL000254v2_alt  1513065 31 +   4827813 GCAGACACAACCCACCCCCACGATAAGGCTG
s panTro5.chr6             30381826 31 + 175400573 GCAGACACAACCCACCCCCACGATAAGGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30616151 31 + 173848474 GCAGACACAACCCACCCCCACGATAAGGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     323857 31 +   2037526 GCAGACACAACCCACCCCCACGATAAGGCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74990321 31 + 122973662 GCAGACACAACCCACCCCCAAGATAAGGCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868526 31 + 172585720 GCAGACACAACCCACCCCCACAATAAGGCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30157982 31 - 170955103 GCAGACACAACCCACCCCCACAATAAGGCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     406795 31 +   1495729 GCAGACACAACCCACCCCCACGATAAGGCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     510647 30 -    863181 GCAGACACAACCCA-CCCCACGATAAGGCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657527 31 -  71996105 GCAGACACAACCCACCCCCACGATAAGGCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     390450 30 -    735854 GCAGACACAACCCA-CCCCACGATAAGGCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     295833 31 -   1829203 GCAGACACAACCCACCCCCACGATAAGGCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30494212 29 + 171630274 GCAGACACAACCCA--CTCACAATAAGGCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           300615 29 +    515838 GCAGACACAACCCA--CCCACAATAAGGCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     931550 29 -   1771730 GCAGACACAACCCA--CCCACAATAAGGCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     110510 29 -    486031 GCAGACACAACCCA--CCCACAATAAGGCTG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           345487 31 +  18854210 AGAGGCAGTACCCATCCCCAAAACAAGGTTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26361057 31 +  26524999 AGAGGCAGAACACATTTCCAAGAGGAGGCTA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386096 275 + 123392446 I
e mm10.chr17               58122761 21 -  94987271 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I

a score=670084.000000
s hg38.chr6_GL000254v2_alt  1513096 59 +   4827813 AAACAGGGAAACCAGCACAAATGAA----CTGACTACAGAA----ACCCAAATTAGTAAGAAAACAT--------------------------
s panTro5.chr6             30381857 59 + 175400573 AAACAGGGAAACCAGCACAAATGAA----CTGACTACAGAA----ACCCAAATTAGTAAGAAAACAT--------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30616182 59 + 173848474 AAACAGGGAAACCAGCACAAATGAA----CTGACTACAGAA----ACCCAAATTAGTAAGAAAACAT--------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     323888 59 +   2037526 AAACAGGGAAACCAGCACAAATGAA----CTGACTACAGAA----ACCCAAATTAGTAAGAAAACAT--------------------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74990352 58 + 122973662 AAACAGGGAAACCAGC-CAAATGAA----CTGACTACAGAA----ACCCAAATTAGTAAGAAAACAT--------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868557 59 + 172585720 AAACAGGGAAACCAGCACAAATGAA----CTGACTACAGAG----ACCCAAATTTGTAAGAAAACAT--------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30158013 59 - 170955103 AAACAGGGAAACCAGCACAAATGAA----CTGACTACAGAG----ACCCAAATTTGTAAGAAAACAT--------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     406826 59 +   1495729 AAACAGGGAAACCAGCACAAATGAA----CTGACTACAGAG----ACCCAAATTTGTAAGAAAACAT--------------------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     510677 59 -    863181 AAACAGGGAAACCAGCACAAATGAA----CTGACTACAGAG----ACCCAAATTTGTAAGAAAACAT--------------------------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657558 59 -  71996105 AAACAGGGAAACCAGCACAAATGAA----CTGACTACAGAG----ACCCAAATTAGTAAGAAAACAT--------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     390480 59 -    735854 AAACAGGGAAACCAGCACAAATGAA----CTGACTACAGAG----ACCCAAATTTGTAAGAAAACAT--------------------------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     295864 59 -   1829203 AAACAGGGAAACCAGCACAAATGAA----CTGACTACAGAG----ACCCAAATTAGTAAGAAAACAT--------------------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30494241 59 + 171630274 AAACAAAGAAACCAGCACAAATGAA----CTGACTATAGAG----ACGCAAATTAGTAGGAAAGCAT--------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           300644 59 +    515838 AAACAGAGAAACCAGTACAAGTGAA----CTGATTATAGAG----ACCCAAATTAGTAGGAAAGCGT--------------------------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     931579 59 -   1771730 AAACAGAGAAACCAGCACAAATGAG----CTGACTATAGAG----GCACAAATTAGTAGGAAAGCGT--------------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     110539 59 -    486031 AAACAAAGAAACCAGCACAAATGAA----CTGATTATAGAG----ATACAAATTAGTAGGAAAGTGT--------------------------
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           345518 59 +  18854210 AGACAGAGAAATCAGCATAAATTAA----CCTACCACAAAG----TCCCAAATTAGTAAGAAAGCAT--------------------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58122782 67 -  94987271 GGGCAGAACAACCAGAGCAAAGGAACTGGCTGGCTGCAGAGTCCTACCTACTTTAGTCAGGAAAAAA--------------------------
i mm10.chr17               I 21 C 0
s canFam3.chr35            26361088 83 +  26524999 AGACAGAGAAGCCAGCTTATGTGAC----CTGA--GCAGAG----TCCCAAGCTACTGTGGGAGTAGCTCAAGAGTACTCAAGAGTCCCTCAC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386096 275 + 123392446 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I

a score=646936.000000
s hg38.chr6_GL000254v2_alt  1513155 51 +   4827813 GATGTAAAAGAACAATCTAATG---AGTAGGTAATTAAACAGG-ACAACTCTCTG
s panTro5.chr6             30381916 51 + 175400573 GATGTAAAAGAACAATCTAATG---AGTAGGTAATTAAACAGG-ACAACTCTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30616241 51 + 173848474 GATGTAAAAGAACAATCTAATG---AGTAGGTAATTAAACAGG-ACAACTCTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     323947 51 +   2037526 GATGTAAAAGAACAATCTAATG---AGTAGGTAATTAAACAGG-ACAACTCTCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74990410 51 + 122973662 GATGTGAAAGAACAATCTAATG---AGTAGGTAATTAAACAGG-ACAACTCTCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868616 51 + 172585720 GGTATTAAAGAACAATCTAATG---AGTAGGTAATTAAACAGG-ACAACTCTCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30158072 51 - 170955103 GGTATTAAAGAACAATCTAATG---AGTAGGTAATTAAACAGG-ACAACTCTCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     406885 51 +   1495729 GGTATTAAAGAACAATCTAATG---AGTAGGTAATTAAACAGG-ACAACTCTCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     510736 51 -    863181 GGTGTTAAAGAACAATCTAATG---AGTAGATAATTAAACAGG-ACAACTCTCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657617 51 -  71996105 GGTGTTAAAGAACAATCTAATG---AGTAGGTAATTAAACAGG-ACAACTCTCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     390539 51 -    735854 GGTGTTAAAGAACAATCTAATG---AGTAGATAATTAAACAGG-ACAACTCTCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     295923 51 -   1829203 GGTGTTAAAGAACAATCTAATG---AGTAGGTAATTAAATAGG-ACAACTTTCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30494300 51 + 171630274 GATGTAAAAGAACAATTGAATG---AGTAGGTAATTAAACAGG-AAAGCTCTCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           300703 51 +    515838 GATGTAAAAGGACAATTGAATG---AGTAGGTAATTAAACAGG-ACAGCTTTCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     931638 51 -   1771730 TATGTAAAAGAACAATTGAATG---AGTAGGTAATTGAACAGG-ACAGCTCTCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     110598 51 -    486031 GAGGTAAAAGAACAATTGAATG---AGTAGGTAATTAAACAGG-ACAGCTCTCTG
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               386371 52 + 123392446 GATGTAAAAGAACAGTCTAACG---AGTAGGTAATTAAACAGGCACAACTCTCTG
i micMur3.chr6             I 275 I 94
s otoGar3.GL873550           345577 52 +  18854210 GATGTAAAAGAGCAGTCTAATG---AGTAGGTAATTAAATAGATATAACTCTCTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58122849 51 -  94987271 ----GAAGAGAGCAGTGAAATGCACACTAAGTAATTAAGAGGCTCCAGCACTCTG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26361171 48 +  26524999 ACTGT--GAGGACAGTGTGATG---AATAGGAAATTAGGCAGCCACAGCTCTG--
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I

a score=1095641.000000
s hg38.chr6_GL000254v2_alt  1513206 96 +   4827813 CAGAAGGAGAGTTTTGAGTTCATATTTTAAGG--GAAAAGTGATGTACAGAATCCCTGACAGG-AAGGACTTATGGAAACTAAATGTATGTTCTTGTCT
s panTro5.chr6             30381967 96 + 175400573 CAGAAGGAGAGTTTTGAGCTCATATTTTAAGG--GAAAAGTGATGTACAGAATCCCTGACAGG-AAGGACTTATGGAAACTAAATGTATGTTCTTGTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30616292 96 + 173848474 CAGAAGGAGAGTTTTGAGCTCATATTTTAAGG--GAAAAGTGATGTACAGAATCCCTGACAGG-AAGGACTTATGGAAACTAAATGTATGTTCTTGTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     323998 96 +   2037526 CAGAAGGAGAGTTTTGAGCTCATATTTTAAGG--GAAAAGTGATGTACAGAATCCCTGACAGG-AAGGACTTATGGAAACTAAATGTATGTTCTTGTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74990461 96 + 122973662 CAGAAGGAGAGTTTTGAGCTCATATTTTAAGG--GCAAAAGGATGTACACAATCCCTGACAGG-AAGGACTCATGGAAACTAAATGTATGTTCTTGTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868667 96 + 172585720 CAGAAGGAGAGTTTTGAGCTCATATTTTAAGG--AAAAAAGGATGTACAGAATCCCTGACAGG-AAGGACTTATGGAAACTAAAGGTATGTTCTTGTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30158123 96 - 170955103 CAGAAGGAGAGTTTTGAGCTCATATTTTAAGG--AAAAAAGGATGTACAGAATCCCTGACAGG-AAGGACTTATGGAAACTAAAGGTATGTTCTTGTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     406936 98 +   1495729 CAGAAGGAGAGTTTTGAGCTCATATTTTAAGGGAAAAAAAGGATGTACAGAATCCCTGACAGG-AAGGACTTATGGAAACTAAAGGTATGTTCTTATCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     510787 96 -    863181 CAGAAGGAGAGTTTTGAGCTCATATTTTAAGG--AAAAAAGAATGTACAGAATCCCTGACAGG-AAGGACTTATGGAAACTAAAGGTATGTTCTTGTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657668 98 -  71996105 CAGAAGGAGAGTTTTGAGCTCATATTTTAAGGAAAAAAAAGGATGTACAGAATCCCTGACAGG-AAGGACTTATGGAAACTAAAGGTATGTTCTTGTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     390590 96 -    735854 CAGAAGGAGAGTTTTGAGCTCATATTTTAAGG--AAAAAAGGATGTACAGAATCCCTGACAGG-AAGGACTTATGGAAACTAAAGGTATGTTCTTGTCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     295974 96 -   1829203 CAGAAGGAGAGTTTTGAGCTCATATTTTAAGG--AAAAAAGGGTGTACAGAATCCCTGACAGG-AAGGACTTATGGAAACTAAAGGTATGTTCTTGTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30494351 95 + 171630274 CAGGAAGAGAGTTTTTAGCTCACATTTTAAGG---AAAAAGGATGTACAGAATCCCTAACAGG-AAAGATTTATGAAAACTAAATGCATGTTCTTGTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           300754 96 +    515838 CAGGAACAAAGTTTTTAGCTCACATTTTAAGG--AAAAAAGGATGTACAGAGTCCCTAACAGG-AAAGATTTATGAAAACTAAATGCATGTTCTTGTCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     931689 96 -   1771730 CAGGAAGAGAGTTTTTAGCTCACATTTTAAGG--AAAAAAGGATGTACACAATCCCTAACAGG-AACGATTTATGAAAACTAAATGCATGTTCTTGTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     110649 96 -    486031 CAGGAAGAGAGTTTTTAGCTCACATTTTAAGG--AAAAAAGGATGTACGGAATCCCTAACAGG-AAAGATTTATGAAAACTAAATGCATGTTCTTGTCT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           345629 92 +  18854210 ---GAAGAAAATTTTGAACTGATATTTCAAGG--AAGAAAGGATGTATAGAATCCCTGACAGG--AGGACATGTGGAAACTAAGTGCATGTTCTTGTCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58122900 89 -  94987271 ---GGTAGGAGTTTTTAGCTGATATT---AAG--ACAGAAAGATTTA--GAGTCCCTGATGGGGAAGGCCATGTGGAAAGTAAGTACATGTTTTTGTGT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26361219 81 +  26524999 CAGGAGGAGC-CTGTGAGTCCCTATGTTAGTG-------------TGCAGAGTGTGCGGTGGG-AAGGACAAGTGGATGCTGAGTGCATGTTC-TGT--
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386423 94 + 123392446 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I

a score=682446.000000
s hg38.chr6_GL000254v2_alt  1513302 40 +   4827813 TTCTTTTGCAGGATGTCAGAGTCAACCAGAGCAGGTAGGG
s panTro5.chr6             30382063 40 + 175400573 TTCTTTTGCAGGATGTCAGAGTCAACCAGAGCAGGTAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30616388 40 + 173848474 TTCTTTTGCAGGATGTCAGAGTCAACCAGAGCAGGTAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     324094 40 +   2037526 TTCTTTTGCAGGATGTCAGAGTCAACCAGAGCAGGTAGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74990557 40 + 122973662 TTCTTTTGTAGGACGTCAGAGTCAACCAGAGCAGGTAGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868763 40 + 172585720 TTCTTTTGTAGGACGTCAGAGTCAACCAGAGCAGGTAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30158219 40 - 170955103 TTCTTTTGTAGGACGTCAGAGTCAACCAGAGCAGGTAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     407034 40 +   1495729 TTCTTTTGTAGGACGTCAGAGTCAACCAGAGCAGGTAGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     510883 40 -    863181 TTCTTTTGTAGGACGTCAGAGTCAACCAGAGCAGGTAGGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657766 40 -  71996105 TTCTTTTGTAGGACGTCAGAGTCAACCAGAGCAGGTAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     390686 40 -    735854 TTCTTTTGTAGGACGTCAGAGTCAACCAGAGCAGGTAGGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     296070 40 -   1829203 TTCTTTTGTAGGACGTCAGAGTCAACCAGAGCAGGTAGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30494446 40 + 171630274 TTCTTTTGTAGGATGTCAGAGTCAACCAGAGCAGGTAGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           300850 40 +    515838 TTCTTTTGTAGGATGTCAGAGTCAACCAGAGCAGGTAGGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     931785 40 -   1771730 TTCTTTTGTAGGATGTCAGAATCAACCAGAGCAGGTAGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     110745 40 -    486031 TTCTTTTGTAGGATGTCAGAGTCAACCAGAGCAGGTAGGG
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               386517 40 + 123392446 TTCTTTTGTGGGATGTCAGAGGCAACCAGAGCAGGTAGGG
i micMur3.chr6             I 94 I 38559
s otoGar3.GL873550           345721 39 +  18854210 -TCTTTTGTAGGATGTCAGAGTCAACCAGAGCAGGTAGGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58122989 40 -  94987271 TTCTTTTGTAGGATGCCAGACTCAATCAGAGCAGGTAAGG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26361300 40 +  26524999 TTCTTTTGTAGGATGTCAGAGTCAACCAGAGCAGGTAGGG
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I

a score=1833264.000000
s hg38.chr6_GL000254v2_alt  1513342 178 +   4827813 CCCACTCCCCGGTCCTGCCTCCTTT---------------------------------------TACTCAACATCAAGACTGAATGGGAAGGGGCAGG------------GGCACTT------ACTGCCACCCACTT----------------TGCCAGGAAAGCAAAGGCACTCTGGC-----AGACACACTGTCTCATTCAACTGTGCAcaaa------------cagtccaaactcactaaagatttgcgttctaaaggttcatt
s panTro5.chr6             30382103 178 + 175400573 CCCACTCCCTGGTCCTGCCTCCTTT---------------------------------------TACTCAACATCAAGACTGAATGGGAAGGGGCAGG------------GGCACTT------ACTGCCACCCACTT----------------TGCCAGGAAAGCAAAGGCACTCTGGC-----AGACACACTGTCTCATTCAACTGTGCAcaaa------------cagtccaaactcactaaagatttgcgttctaaaggttcatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30616428 178 + 173848474 CCCACTCCCTGGTCCTGCCTCCTTT---------------------------------------TACTCAACATCAAGACTGAATGGGAAGGGGCAGG------------GGCACTT------ACTGCCACCCACTT----------------TGCCAGGAAGGCAAAGGCACTCTGGC-----AGACACACTGTCTCATTCAACTGTGCAcaaa------------cagtccaaactcactaaagatttgcgttctaaaggttcatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     324134 178 +   2037526 CCCACTCCCCGGTCCTGCCTCCTTT---------------------------------------TACTCAACATCAAGACTGAATGGGAAGGGGCAGG------------GGCACTT------ACTGCCACCCACTT----------------TGCCAGGAAAGCAAAGGCACTCTGGC-----AGACACACTGTCTCATTCAACTGTGCAcaaa------------cagtccaaactaactaaagatttgcgttctaaaggttcatt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74990597 178 + 122973662 CCCACTCCCCAGTCCTGCCTCCTTT---------------------------------------TACTCAACATCAAGACTGAAGGGGAAGGGATAGG------------GGCACTT------ACTGCCACCTACTT----------------TGCCAGGAAAGCAAAGGCACTCTGGC-----AGACACACTGTCTCATTCAACCGTGCATAAA------------CAGTCCAAACTTACTAAAGACTTGCATTCTAAAGGTTCATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868803 188 + 172585720 CCCACTCCCCAGTCCTGTCTCCTTT---------------------------------------TACTCAACATCAAGATTGAAGGCGAAGGGGCAGG------------GTCACTT------ACTGCCACCCACTTACTTCCCCTC------TTCCAGGAAAGAAAAAGCACTCTGGC-----AGACACACTGTCTCATTCAACTATCCAcaaa------------cagtccaaactcactaaagatttgcgttctaaaggttcatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30158259 188 - 170955103 CCCACTCCCCAGTCCTGTCTCCTTT---------------------------------------TACTCAACATCAAGATTGAAGGCGAAGGGGCAGG------------GTCACTT------ACTGCCACCCAGTTACTTCCCCTC------TTCCAGGAAAGAAAAAGCACTCTGGC-----AGACACACTGTCTCATTCAACTATCCAcaaa------------cagtccaaactcactaaagatttgcgttctaaaggttcatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     407074 188 +   1495729 CCCACTCCCCAGTCCTGCCTCCTTT---------------------------------------TACTCAACATCAAGACTGAAGGCGAAGGGGCAGG------------GTCACTT------ACTGCCACCCAGTTACTTCCCCTC------TTCCAGGAAAGCAAAGGCACTCTGGC-----AGACACACTGTCTCATTCAACCGTCCACAAA------------CACTccaaactcactaaagatttgcgttctaaaggttcatt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     510923 188 -    863181 CCCACTCCCCAGTCCTGCCTCCTTT---------------------------------------TACTCAACATCAAGATTGAAGGGGAAGGGGCAGG------------GTCACTT------ACTGCCACCCACTTACTTCCCCTC------TTCCAGGAAAGAAAAAGCACTCTGGC-----AGACACACTGTCTCATTCAACTATCCAcaaa------------cagtccaaactcactaaagatttgcgttctaaaggttcatt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657806 188 -  71996105 CCCACTCCCCAGTCCTGCCTCCTTT---------------------------------------TACTCAACACCACGACTGAAGGCGAAGGGGCAGG------------GTCATTT------ACTGCCACCCACTTACTTCCCCTC------TTCCAGGAAAGCAAAGGCACTCTGAC-----AGACACACTGTCTCATTCAACCGTCCAcaaa------------cagtccaaactcactaaagatttgcgttctaaaggttcatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     390726 188 -    735854 CCCACTCCCCAGTCCTGCCTCCTTT---------------------------------------TACTCAACATCAAGATTGAAGGGGAAGGGGCAGG------------GTCACTT------ACTGCCACCCACTTACTTCCCCTC------TTCCAGGAAAGAAAAAGCACTCTGGC-----AGACACACTGTCTCATTCAACTATCCAcaaa------------cagtccaaactcactaaagatttgcgttctaaaggttcatt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     296110 188 -   1829203 CCCACTCCCCAGTCCTGCCTCCTTT---------------------------------------TACTCAACATCAAGACTGAAGGGGAAGGGGCAGG------------GTCACTT------ACTGCCACCCACTTACTTCCCCTC------TTCCAGGAAAGCAGAGGCACTCTGGC-----AGACACATTGTCTCATTCAACCGTCCAcaaa------------cagtccaaactcactaaagatttgcattctaaaggttcatt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30494486 190 + 171630274 TCCACTCCCCAGCCTGGCCTCCTTT---------------------------------------TACTCAACTTGAAGACTGAAGGGGAAGGGGCAAG------GGCAGTGGCACTT------AGTGCCACCCACTT----CCCCTC------TTCCACGAAAGCAAAGGCACTCTGGC-----AGACACACTGTCTCATTCACCCATgcacaaa------------cagtccaaactcactaaagattcatgttctaaaggttaatt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           300890 184 +    515838 TCCACTCCCCAGTCCAGCCTCCTTT---------------------------------------TACTCAACATGAAGACTGAACAGGAAGGGGCAGG------------GGCCCTT------ACTGTCACCTACTT----CCCCTC------TTCCAGGAAAGCAAAGGCACTCTGGC-----AGACACACTGTCTCATTCACCCATGCAcaaa------------cagtccaaactcactaaagattcatgttctaaaggttaatt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     931825 196 -   1771730 TCCACTCCCCAGTCCTGCCTCCTTT---------------------------------------CACTCAACATGAAGACTGAaggggcaggggcaagggcaggggcaggggcCCTT------ACTACCACCCACTT----CCCCTC------TTCCAGGAAAGCAAAGGCACTCTGGC-----AGACACACTGTCTCATTCACCCGTGCAcaaa------------cagtccaaactcactaaagatttgtgttctaaaggttaatt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     110785 190 -    486031 TCCACTCTGCAGTCCTGCCTCCTTT---------------------------------------TACTCAACATGATGACTGAAGGGGAAGGGGCAGG------GGCAGTGGCACTT------ACTGCCACCCACTT----CCCCTC------TTCCAGGAAAGCAAAGGCACTCTGAC-----AGACACACTGTCTGATTCACCCATGCAcaaa------------cagtccaaactcactaaagattcatgttctgaaggttaatt
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           345760 196 +  18854210 CCCACTACCCAGTCCCGACTCCTTTA--------------------------------------TGCTCAATGCGGAGA------GTGAAGGGGGAGG------------GGTTTTC------ACTGCCACCCACCT----CCTATC------CCCCAGAAAGGCAAAAGCACTCTGACAGTGAAGCCTCATTCACTCACACACACGTACACACATATACACATATGCAGTCCAAACTTATGGAAGGTTCATTTTTAACCTGATCAGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58123029 157 -  94987271 --CCCTCCCCAGTTCTGCCTCCTTT----------------------------------------------------------------------ATG------------TGCATCTTATGACACAGCCATCCATCTGGACCCTTGTGGATGGTTCCAGAAA---------ACACTGAT-----GGATACCCAGG-TCACTCCCTCTCTTACTAT------------CAACTCGAACTCAGTAAAATGATGAGTTGAaactggacatt
i mm10.chr17               C 0 I 475
s canFam3.chr35            26361340 191 +  26524999 CCTTCTCTACAGTCCTGCCTCCTTTATGCCAGGAGTGTGCCCTCTGTCCTTGTCACCTCTGCTCCACTGAACACGGAGCCTCAAGGAGA--------G------------GGCACCC------TCTTCC------------CTGCCC------CCACAGCAAGGCAAAATCATGTTcac-----acacacac------------acacacacaca------------caGCCTCCACT---TAAATGTTTGTGGTCTAGA-GTTCACT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I

a score=1993009.000000
s hg38.chr6_GL000254v2_alt  1513520 177 +   4827813 tttaaattgattggttggtattggggacaca-tttt-----ttcccctagaagtgaagttataaataataatcatgtttttaggttgatccaggaacatttattt-aatctatgaaattattagtacttgagtcagtatctaacaccatttaaaaTGTAATTTAAAGGGGGAATACTTTCTGTA
s panTro5.chr6             30382281 177 + 175400573 tttaaattgattggttggtattggggacaca-tttt-----ttcccctagaagtgaagttataaataataatcatgtttttaggttgatccaggaacatttattt-aatctatgaaattattagtacttgagtcagtatctaacaccatttaaaaTGTAATTTAAAGGGGGAATACTTTCTGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30616606 177 + 173848474 tttaaattgattggttggtattggggacaca-tttt-----ttcccctagaagtgaagttataaataataatcatgtttttaggttgatccaggaacatttattt-aatctatgaaattattagtacttgagtcagtatctaacaccatttaaaaTGTAATTTAAAGGGGGAATACTTTCTGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     324312 177 +   2037526 tttaaattgagtggttggtattggggacaca-tttt-----ttcccctagaagtgaagttataaataataatcatgtttttaggttgatccaggaacatttattt-aatctatgaaattattagtacttgagtcagtatctaacaccatttaaaaTGTAATTTAAAGGGGGAATACTTTCTGTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74990775 177 + 122973662 TTTAAATTGATTGGTTGGTATTGGGTACATA-TTTT-----TTCCCCTAGAAGTGAAGTTATAAATAATAATCATGTTTTTAGGTTGATCCAGGAACATTTATTT-AATCTATGAAATTATTAGCACTTGAGTCTGTATCTAACACCATTTAAAATGTAATTTAAAGGGGGAATACTTTTTGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30868991 173 + 172585720 tttaaat----tggttggtattggggacaca-tttt-----ttcccctagaagtgaagttataaataataatcatgtttttaggttgatccagaaacatttattt-aacctatgaaattattagtacttgagtcagtatctaacaccatttaaaaTGTAATTCAAAGGAGGAATACTTTCTGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30158447 173 - 170955103 tttaaat----tggttggtattggggacaca-tttt-----ttcccctagaagtgaagttataaataataatcatgtttttaggttgatccagaaatatttattt-aacctatgaaattattagtacttaagtcagtatctaacaccatttaaaaTGTAATTCAAAGGAGGAATACTTTCTGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     407262 172 +   1495729 tttaaat----tggttggtactggggacaca--ttt-----ttcccctagaagtgaagttataaataataatcatgtttttaggttgatccaggaacatttattt-aatctatgaaattattagtacttgagtcagtatctaacaccatttaaaaTGTAATTCAAAGGAGGAGTACTTTCTGTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     511111 172 -    863181 tttaaat----tggttggtattggggacaca--ttt-----ttcccctagaagtgaagttataaataataatcatgtttttaggttgatccagaaacatttattt-aacctatgaaattattagtacttgagtcagtatctaacaccatttaaaaTGTAATTCAAAGGAGGAATACTTTCTGTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29657994 173 -  71996105 tttaaat----tggttggtactggggacaca--ttt-----ttccccgagaagtgaagttataaataacaatcatgtttttaggttgatccaggaacatttatttaaATCTATGAAATTATTGGTGCTTGAGTCAGTATCTAACACCATTTAAAATGTAATTCAAAGGAGGAATACTTTCTGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     390914 172 -    735854 tttaaat----tggttggtattggggacaca--ttt-----ttcccctagaagtgaagttataaataataatcatgtttttaggttgatccagaaacatttattt-aacctatgaaattattagtacttgagtcagtatctaacaccatttaaaaTGTAATTCAAAGGAGGAATACTTTCTGTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     296298 172 -   1829203 tttaaat----tggttggtattggggacaca--ttt-----ttcccctagaagtgaagttataaataataatcatgtttttaggttgatccagaaacatttattt-aatctatgaaattattagtacttgagtcagtatctaacaccatttaaaaTGTAACTCAAAGGAGGAATACTTTCTGTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30494676 176 + 171630274 tttaaaccaattggtttgtattggtgacatg--ttt-----ttcccctagaagtgaagttataaataacaatcatgtttttaggttgatccaggaacatttattt-aatctatGCAATTATTAGTACTTGAGTCAGTGTCTAACACCATTTAAAATGTAATTCAAAGGGGAAATACTTTCTGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           301074 176 +    515838 tttaaactaattggtttgtattggggacata--ttt-----ttcccctagaagtgaaattataaataataatcatgtttttaggctgatccaggaacatttattt-catctgtgcaattattagtacttgagtcattatctaacaccattgaaaatgtaattcaaaggggaaatactttctgTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     932021 176 -   1771730 tttaaactaattggttggtattggggacaca--ttt-----ttcccctagaagtgaagttataaatgataatcatgtttttaggttgatccaggaacatttattt-aatctatgcaattattagtacttgagacggtatctaacaccatttaaaatgtaattcaaaggggaaatactttctgTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     110975 176 -    486031 tttaaactaattggtttgtactggggacaca--ttt-----ttcccctagaagtgaagttacaaataataatcatgtttttaggttgatccaggaacatttattt-aatctatGCAATTATTAGTACTTGTGTCGGTATCTAACACCATTTAAAATGTAATTAAAAGGGGAAATACTTTCTGTA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           345956 160 +  18854210 TAAAAA-----TTCTTGGTATT-ATGACACATTTTT-----TTCTCTTACAAGTGAAGTTATACGCAATAATCATGTTTTAAGACTGGTCCAGGAACATCTATTT-AATCTGTAAAATTATTAGTAC------------CTAACACTATTTAAAATATAATCTGAAATGGAAATATTTTCTATA
i otoGar3.GL873550         C 0 I 266
s canFam3.chr35            26361531 179 +  26524999 TTTAAACGGGTTGTTTGGTGCCAGGGATACA--TTTCCCCCTGCCCCCAGAGGTGAAGTTATAAACAATACTCATGTTTTTAGGCTGATGCAGGAACATCTGTTT-GGTTCCTGAAATTATTGGTACCTGAATCAGTGTTGAACAGCAGGCGACATGTAGCTCCGAAGGGAGGTA--TCCTGCA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58123186 475 -  94987271 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I

a score=473117.000000
s hg38.chr6_GL000254v2_alt  1513697 47 +   4827813 GACT-------------------------------ATGATAAGCATGGAAACCAGGAATACCAGCCTGTTCTTTCATT
s panTro5.chr6             30382458 47 + 175400573 GACT-------------------------------ATGATAAGCATGGAAACCAGGAATACCAGCCTGTTCTTTCATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30616783 47 + 173848474 GACT-------------------------------ATGATAAGCATGGAAACCAGGAATACCAGCCTGTTCTTTCATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     324489 47 +   2037526 GACT-------------------------------ATGATAAGCATGGAAACCAGGAATACCAGCCTGTTCTTTCATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74990952 46 + 122973662 GACT-------------------------------ATGAT-AGCATGGAAACCGGGAATACCAGCCTGTTCTTTCATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30869164 47 + 172585720 GACT-------------------------------GTGAGAAGCATGGAAACCGGGAATACCAGCCTGTTCTTTCATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30158620 47 - 170955103 GACT-------------------------------GTGAGAAGCATGGAAACCGGGAATACCAGCCTGTTCTTTCATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     407434 47 +   1495729 GACT-------------------------------GTGAGAAGCATGGAAACCGGGAATACCAGCCTGTTCTTTCATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     511283 47 -    863181 GACT-------------------------------GTGAGAAGCATGGAAACCGGGAATACCAGCCTGTTCTTTCATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29658167 47 -  71996105 GACT-------------------------------ATGAGAAGCATGGAAACCGGGAATACCAGCCTGTTCTTTCATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     391086 47 -    735854 GACT-------------------------------GTGAGAAGCATGGAAACCGGGAATACCAGCCTGTTCTTTCATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     296470 47 -   1829203 GACT-------------------------------GTGAGAAGCATGGAGACCGGGAATACCAGCCTGTTCTTTCATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30494852 47 + 171630274 GACT-------------------------------ATGATAAGCATGGAAACCACGAATACCAGCCTATTCTTTCATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           301250 47 +    515838 GACT-------------------------------ATGATAAGCATGGAAACTGGGAATATCAGCCTATTGTTTCATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     932197 37 -   1771730 GACT-------------------------------ATGATAAGCATGGAAACCAGGAATACCAGCCTA----------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     111151 47 -    486031 GACT-------------------------------ATGATAAGCACAGAAACCAGGAATACCAGCCTATTATTTCATT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           346382 78 +  18854210 gactctgtctcaaaaaaaaaaaaaaagaaaaGAAAATAATAGGCATGGAATCTGGGAAGACTAGTCTGTTCTTTCATT
i otoGar3.GL873550         I 266 C 0
s canFam3.chr35            26361710 27 +  26524999 ---------------------------------------------------GCGGGGAGACCAGCCTGTCCTTCTGGG
i canFam3.chr35            C 0 I 151
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58123186 475 -  94987271 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I

a score=340710.000000
s hg38.chr6_GL000254v2_alt  1513744 34 +   4827813 CATTCA-----TTTTTTACAC-ACATCTCTGGTTTCCTTC
s panTro5.chr6             30382505 34 + 175400573 CATTCA-----TTTTTTACAC-ACATCTCTGGTTTCCTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30616830 34 + 173848474 CATTCA-----TTTTTTACAC-ACATCTCTGGTTTCCTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     324536 34 +   2037526 CATTCA-----TTTTTTACAC-ACATCTCTGGTTTCCTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74990998 34 + 122973662 CATTCA-----TTTTTTACAC-ACATCTCTGGTTTCCTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30869211 34 + 172585720 CATTCA-----TTTTTTACAC-ACATCTCTGGTTTCCTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30158667 34 - 170955103 CATTCA-----TTTTTTACAC-ACATCTCTGGTTTCCTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     407481 34 +   1495729 CATTCA-----TTTTTTACAC-ACATCTCTGGTTTCCTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     511330 34 -    863181 CATTCA-----TTTTTCACAC-ACATCTCTGGTTTCCTTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29658214 34 -  71996105 CATTCA-----TTTTTTACAC-ACATCTCTAGTTTCCTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     391133 34 -    735854 CATTCA-----TTTTTCACAC-ACATCTCTGGTTTCCTTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     296517 34 -   1829203 CATTCA-----TTTTTTACAC-ACATCTCTGGTTTCCTTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30494899 39 + 171630274 CATTCATTTTTTTTTTTACAC-ACATCTCTTGTTTCCTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           301297 36 +    515838 CATTCA---TTTTTTTTACAC-ACATCTCTTGTTTCCTTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     932234 27 -   1771730 ------------TTTTTACAC-ACATCTCTTGTTTCCTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     111198 37 -    486031 CATTCA--TTTTTTTTTACAC-ACATCTCTTGTTTCCTTC
i aotNan1.NW_018496901v1   C 0 I 144
s otoGar3.GL873550           346460 32 +  18854210 CAT--------TTTCCCACTCTATTTCTCCTATTTCCTTC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58123186 475 -  94987271 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I
e canFam3.chr35            26361737 151 +  26524999 I

a score=2065638.000000
s hg38.chr6_GL000254v2_alt  1513778 196 +   4827813 AGAATTTTCT-AATGCTACTGTAAAAGGACAGCCACCAGGAGCC-AGTGGCATTGTAAATGCATGGCCCTTTCCTTCCCTGTCTGCTATAAGCATTA-GCAGTCTGCACTGAGATGAAGAGAGGTGTAGTGACTAGGGAACAATTGTCACGTGCTTTGTGCCTATTCCCGTGCAGGGAGGATAAA--CCCAGGGTCCATGA
s panTro5.chr6             30382539 196 + 175400573 AGAATTTTCT-AATGCTACTGTAAAAGGACAGCCACCAGGAGCC-AGAGGCATTGTAAATGCATGGCCCTTTCCTTCCCTGTCTGCTATAAGCATTA-GCAGTCTGCACTGAGATGAGGAGAGGTGTAGTGACTACGGAACACTTGTCATGTGCTTTGTGCCTATTCCCGTGCAGGGAGGATAAA--CCCAGGGTCCATGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30616864 196 + 173848474 AGAATTTTCT-AATGCTACTGTAAAAGGACAGCCACCAGGAGCC-AGAGGCATTGTAAATGCATGGCCCTTTCCTTCCCTGTCTGCTATAAGCATTA-GCAGTCTGCACTGAGATGAGGAGAGGTGTAGTGACTACGGAACACTTGTCATGTGCTTTGTGCCTATTCCCGAGCAGGGAGGATAAA--CCCAGGGTCCATGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     324570 197 +   2037526 AGAATTTTCTAAATGCTACTGTAAAAGGACAGCCACCAGGAGCC-AGAGACATTGTAAATGCATGGCCCTTTCCTTCCCTGTCTGCTATAAGCATTA-GCAGTCTGCACTGAGATGAGGAGAGGTGTAGTGACTAGGGAACACTTGTCACATGCTTTGTGCCTATTCCCGTGCAGGGAGGATAAA--CCCAGGGTCCATGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74991032 196 + 122973662 AGAATTTTCT-AATGCTACTGTAAAAGGACAGCCACCAGGAGCC-AGAGGCATTGTAAATGCATGGCCCTTTCCTTTTCTGTCTGCTATAAGCATTA-GCAGTCTGCACTAAGATGAGGAGAGGTGTAGTGACTAGGGAACACTTGTCACGTGCTTTGTGCCTATTCCCGTGCAGGGAGGAGAAA--CCCAGGGTCCATGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30869245 196 + 172585720 AGGATTTTCT-AATGCTACTGTAAAAGGACAACCACCAGGAGCC-AGAGGCATTGTAAACGCATGACCTTTTCCTTCCCTGTCTGCTGTAAGCATTA-GCAGTCTGCACTGAGATGAGGAGAGGTGTAGTGACTAGGGAACACTTGTCACGTGCTTTGTGCCTATTTACATGCAGGGAAGATAAA--CCCAGGGTCCATGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30158701 196 - 170955103 AGGATTTTCT-AATGCTACTGTAAAAGGACAACCACCAGGAGCC-AGAGGCATTGTAAACGCATGGCCTTTTCCTTCCCTGTCTGCTGTAAGCATTA-GCAGTCTGCACTGAGATGAGGAGAGGTGTAGTGACTAGGGAACACTTGTCACGTGCTTTGTGCCTATTTACATGCAGGGAAGATAAA--CCCAGGGTCCATGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     407515 196 +   1495729 AGGATTTTCT-AATGCTGCTGTAAAAGGACAGCCACCAGGATCC-AGAGGCATTGTAAATGCATGGCCTTTTCCTTCCCTGTCTGCTATAAGCATTA-GCAGTCTGCACTGAGATGAGGAGAGGTATAGTGACTAGGGAACACTTGTTACGTGCTTTGTGCCTATTTACATGCAGGGAAGATAAA--CCCAGGGTCCATGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     511364 196 -    863181 AGGATTTTCT-AATGCTACTGTAAAAGGACAACCACCAGGAGCC-AGAGGCATTGTAAACGCATGGCCTTTTCCTTCCCTGTCTGTTATAAGCATTA-GCAGTCTGCACTGAGATGAGGAGAGGTGTAGTGACTAGGGAACACTTGTCACGTGCTTTGTGCCTATTTACATGCAGGGAAGATAAA--CCCAGGGTCCATGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29658248 194 -  71996105 AGGATTTTCT-AATGCTACTGTAAAAGGACAACCACCAGGAGCC-AGAGGCATTGTAAACACATGGCCTTTTCCTTCCCTGTCTGCTATAAGCATTA-GCAGTCTGCACTGAGATGAGGAGAGGTATGGTGAC--GGGAACACTTGTTACGTGCTTTGTGCCTATTTACGTGCAGGGAAGATAAA--CCCAGGGTCCGTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     391167 196 -    735854 AGGATTTTCT-AATGCTACTGTAAAAGGACAACCACCAGGAGCC-AGAGGCATTGTAAACGCATGGCCTTTTCCTTCCCTGTCTGCTATAAGCATTA-GCAGTCTGCACTGAGATGAGGAGAGGTGTAGTGACTAGGGAACACTTGTCACGTGCTTTGTGCCTATTTACATGCAGGGAAGATAAA--CCCAGGGTCCATGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     296551 195 -   1829203 AGGATTTTCT-AATGCTACTGTAAAAGGACAGCCACCAAGAGCC-AGAGGCATTGTAAATGCATGGCCTTTTCCTT-CCTGTCTGCTATAAGCATTA-GCAGTCTGCACTGAGATGAGGAGAGGTGTAGTGACTAGGGAACACTTGTCACGTGCTTTGTGCCTATTTACGTGCAGAGGAGATAAA--CCCAGGGTCCATGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30494938 170 + 171630274 AGAATTTTCT-AATGCTGTTGCAAAAGGACAGCCACCAGGAGCC-AGAGGCACTGTAAATGCA------TTTCCTTCCCTGTCTGCT---------------------CTGAGATGAGAAGAGGTGTAGTAACTAGGGAACACTTGTCACATGCTTTGTGCCTATTCACGCGCAGGGAGGAAAAG--CCCAGGGTCCATGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           301333 196 +    515838 AGAATTTTCT-AATGCTGCTGCAAAAGGACAGCCACCAGGAGCC-AGAGGCATTGTAAATGCATGCCCCTTTCCTTCCCTGTCTGCTATAAGCATTA-GCAGTCTGCACCGAGATGAGAAGAGGTGTAGTGACTAGGGAACACTTGTCACGTGCTTTGTGCCTATTCACGCGCAGGGAGGATAAG--CCCAGGGTCCATGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     932261 196 -   1771730 AGAATTTTCT-AAAGCTGCTGCCAAAGGACAGCCACCAGGAGCC-AGAGGCATTGTAAATGCATGCCCCTTTCCTTCCCTGTCTGCTGCAAGCATGA-GCAGTCTGCACTGAGATGAGAAGAGGTGTAGTGACTAGGGAACACTTGCCACGTGCTTTGTGCCTATTCACGCACAGGGAGGATAAG--CCCAGGGTCCATGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     111379 184 -    486031 AGAATTTTCT-AATGCTGCTGCAAAAGGACAGCCACCAGGAACC-AGAGGCATTGTAAATGCATGCCCCTTTCCTTCCCTGTCTGCTATAAGCATTA-GCAGTCTGCACTGAGATGAGAAGAGGTGTAGTG------------TTGTCACGTGCTTTGTGCCTATTCATGCGCAGGGAGGATAAG--CCCAGGGTCCATGA
i aotNan1.NW_018496901v1   I 144 C 0
s otoGar3.GL873550           346492 196 +  18854210 AGCATTTTCT-AATGTTCCTATGAAAGGACAGCCACCAGGAGCTGGGAGGTATTATAAACACACACCCCTTCCCTTTCCTTTCTGCTGTAAGCCCTAGGCA--CTGCACTGAGATGAGAAGAGACATA-TAGCTAAGGAATGCTTAGCATGTGC-TTGTGCCTACTggtatgtaggaagtataaaaccccagtgcctacga
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58123186 475 -  94987271 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I
e canFam3.chr35            26361737 151 +  26524999 I

a score=73302.000000
s hg38.chr6_GL000254v2_alt  1513974 6 +   4827813 ATCAGG
s panTro5.chr6             30382735 6 + 175400573 ATCAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30617060 6 + 173848474 ATCAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     324767 6 +   2037526 ATCAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74991228 6 + 122973662 ATCAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30869441 6 + 172585720 ATCAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30158897 6 - 170955103 ATCAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     407711 6 +   1495729 ATCAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     511560 6 -    863181 ATCAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29658442 6 -  71996105 ATCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     391363 6 -    735854 ATCAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     296746 6 -   1829203 ATTAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30495108 6 + 171630274 ATCAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           301529 6 +    515838 GTCAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     932457 6 -   1771730 ATCAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     111563 6 -    486031 ATCAGG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           346688 6 +  18854210 atcagg
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58123661 6 -  94987271 ATTTAA
i mm10.chr17               I 475 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I
e canFam3.chr35            26361737 151 +  26524999 I

a score=694888.000000
s hg38.chr6_GL000254v2_alt  1513980 63 +   4827813 AAGTGTCTCCAAACATGCTTTTCAAAGAGCAT----tagaggtttagatctagaagggcttggaggt
s panTro5.chr6             30382741 63 + 175400573 AAGTGTCTCCAAACATGCTTTTCAAAGCACAT----tagaagtttagatctagaagggcttggaggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30617066 63 + 173848474 AAGTGTCTCCAAACATGCTTTTCAAAGCACAT----tagaagtttagatctagaagggcttggaggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     324773 63 +   2037526 AAGTGTCTCCAAACATGCTTTTCAAAGAGCAT----tagaggtttagatctagaagggcttggaggt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74991234 63 + 122973662 AAGTGTCTCCAAACATGCTTTTCAAAGAGCAT----tagaggtttagatctagaagggcttggaggt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30869447 63 + 172585720 AAGTGTCTCCAAACATGCTTTTCAAAGAGCAT----tagaggtttagatctagaagggcttggggat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30158903 63 - 170955103 AAGTGTCTCCAAACATGCTTTTCAAAGAGCAT----TAGAGGTTTAGATCTAGAAGGGCTTGGGGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     407717 63 +   1495729 AAGTGTCTCCAAACATGCTTTTCAAAGAGCAT----tagaggtttagatctagaagggcttggggat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     511566 63 -    863181 AAGTGTCTCCAAACATGCTTTTCAAAGAGCAT----TAGAGGTTTAGATCTAGAAAGGCTTGGGGAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29658448 63 -  71996105 AAGTGTCTCCAAACATGCTTTTCAAAGAGCAT----tagaggtttagatctagaagggcttggggat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     391369 63 -    735854 AAGTGTCTCCAAACATGCTTTTCAAAGAGCAT----tagaggtttagatctagaaaggcttggggat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     296752 63 -   1829203 AAGTGTCTCCAAACATGCTTTTCAAAGAGCAT----TAGAGGTTTAGATCTAGAAGGGCTTGGGGAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30495114 63 + 171630274 AAATGTCTCCAAACATACTTTTCAAAGAGCAT----tagaggtttagatctagaagggcttggagat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           301535 63 +    515838 AAGTGTCTCCAAACATACTTTTCAAAGAGCAT----TAGAGGTTTATCTCTAGAAAGGCTTGGAGAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     932463 63 -   1771730 AAGTGTCTTCAAACATACTTTTCAAAGAGCAT----tagaggtttagatctagaagggcttggagat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     111569 67 -    486031 AATTGTCTCCAAACATACTTTTCAAAGAGCATTAcatacaggtttagatctagaagggcttggagat
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           346694 26 +  18854210 aagg-----cacacacacttttcaaagag-at-----------------------------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58123667 62 -  94987271 AAGTGTCTCCAAACATGCTTCTCAACGAGCGT----TTG-GATTAAAGTCAAGAAGCATGTGGTGGG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26361888 57 +  26524999 AGGCATCTC---ATGTGCCTTTCAAACAGGTT----TAGAAg---ggcgcctgggtggcttagcggt
i canFam3.chr35            I 151 I 551
e micMur3.chr6               386557 38559 + 123392446 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I

a score=4245617.000000
s hg38.chr6_GL000254v2_alt  1514043 449 +   4827813 cttccagtc-tgaggaagaaactgagacc-cagggggtgaagag--tcttcaaggtaatgcagcaagtgtctaatgaggactgagctgggaccagaatcaggag--tttttttcattgcaaTATATATTTTCGTTGATCCTTTTTTTTTCTTCCCTTCTAGCCTCTTTTCCTTTACAAATAGCAGCATACACA-AGGGTAGTTTAAGGCTGTTTTCAAATGGTACCCTGTTGCCCTCTAGAGACCAAA-AGGGGTAA-TGATCTCTGTCCCT--CAGCCCCTACAGAACCAAACATTCTCCTAAAGGGGCTTAC--CTCCAATTCTTGAGAAGTGATTATCC----TTAGTTCCTCTTAGGTTTAACTGAAATGCCTACTATTTTA-----------------------------------------------GT-------------------------------------------AACTACACATTTCCAGCAAAAGTAAAG--AAATGATACTCAATT----TCATTATTCACCACAGACGCCAAGATCATTCTTTAG
s panTro5.chr6             30382804 406 + 175400573 cttccagtc-tgatgaagaaactgagacc-cagggggtgaagag--tcttcaaggtaatgcagcaagtgtctaatgaggactgagctgggaccagaatcaggag--tttttttcattgca----aTATTTTCATTG---------------------------------------CAAATAACAGCATACACA-AGGGTAATTTAAGGCTGTTTTCAAATGGTACCCTGTTGCCCTCTAGAGACCAAA-AGGGGTAA-TGATCTCTGTCCCT--CAGCCCCTACAGAACTAAACATTCTCCTAAAGGGGCTTAC--CTCCAATTCTTGAGAAGTGATTATCC----TTAGTTCCTCTGAGGTTTAACTGAAATGCCTCCTATTTTA-----------------------------------------------GT-------------------------------------------AACTACACATTTCCAGCAAAAGTAAAG--AAATGATACTAAATT----TGATTATTCACCACAGACGCCAAGATCATTCTTTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30617129 406 + 173848474 cttccagtc-tgatgaagaaactgagacc-cagggggtgaagag--tcttcaaggtaatgcagcaagtgtctaatgaggactgagctgggaccagaatcaggag--tttttttcattgca----atattttcattg---------------------------------------caAATAACAGCATACACA-AGGGTAATTTAAGGCTGTTTTCAAATGGTACCCTGTTGCCCTCTAGAGACCAAA-AGGGGTAA-TGATCTCTGTCCCT--CAGCCCCTACAGAACTAAACATTCTCCTAAAGGGGCTTAC--CTCCAATTCTTGAGAAGTGATTATCC----TTAGTTCCTCTGAGGTTTAACTGAAATGCCTCCTATTTTA-----------------------------------------------GT-------------------------------------------AACTACACATTTCCAGCAAAAGTAAAG--AAATGATACTAAATT----TGATTATTCACCACAGACGCCAAGATCATTCTTTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     324836 447 +   2037526 cttccagtc-tgaggaagaaactgagacc-ca-ggggtgaagag--tcttcaaggtaatgcagcaagtgtctaatgaggactgagctgggaccagaatcAGGAG--TTTTTTTCATTGCAATATATATTTTCGTTGATCCTTTTTTTTTCTTCCCTTCTAGCCTCTTTTCCTTTACAAATAGCAGCATACACA-AGGGTAATTTAAGGCTGTTTTCAAATGGTACCCTGTTGCCCTCTAGAGACCAAA-AGGGGTAA-TGATCTCTGTCCCT--CAGCCCCTACAGAACTAAACATTCTCCTAGAGGGGCTTAC--CTCCAATTCTTGAGAAGTGATTATCC----TTAGTTCCTCTGAGGTTTAACTGAAATGCCTCCTATTTTA-----------------------------------------------GT-------------------------------------------AACTACACATTTCCAGAAAAAGTAAAG--AAATGATACTAAATT----TGATTATTCACCACAGAC-CCAAGATCATTCTTTAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74991297 448 + 122973662 cttccagtc-tgaagaagaaactgagacc-cggggggtgaagag--tattcaaggtaatgcagcaagtgtctaatgaggactgagctgggaccggaatcaggag--tttttttcatttcaaTGTATATTTTCGTTTATCC-TTTTTTTTCTTCCCTTCTAGCCTCTTTTCCTTTACAAATAGCAGCATACACA-AGGGTAGTTTAAGGCTGTTTTCAAATGGTACCCTGTTGCCCTCTAGAGACCAAA-AGGGGTAA-TGATCTCTGTCCCT--CAGCCCCTACAGAACCAAACATTCTCCTAAAGGGGCTTAC--CTCCAATTCTTGAGAAGTAATTATCG----TTAGTTCCTCTTAGGTTTAACTGAAATGCCTACTACTTTA-----------------------------------------------GT-------------------------------------------AACTACACATTTCCAGCAAAAGTAAAG--AAATGATACTCAATC----TGATTATTCACCACAGACGCCAAGATCATTCTTTAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30869510 439 + 172585720 cttccaggc-tgatgaagaaactcagaccccggggggtgaaga----------ggtaacacagcaagtgtctaatgaggactgagctgggaccagaatcAGGAG--TTTTTTTCATTGCAATATGTATTTTCGTTTATCC-TTTTTTTTCTTCCCTTCTAGCCTCTTTTCCTTTACAAATAGCAGCATACACA-AGGGTAGTTTAAGGCTGTTTCCAAATGGTACCCTGTTGCCCTCTAGAGGTCAAA-AGGGGTAA-TGATCTCTGTCCCT--CGGCCCCGACAGACCCAAACATTTTCCTAAAGGGGCCTAC--CGCCAATTCTTGAGAAGTAATTATCA----TTGGTTCCTC--AGGTTTAACTGAAATGCCTACTACTTTA-----------------------------------------------GT-------------------------------------------AACTACACATTTCCAGCAAAAGTAAAG--AAACGATACTCAATC----TGATCATTCACCACAGACGCCAAGATCATTCTTTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30158966 439 - 170955103 CTTCCAGGC-Tgatgaagaaactcagaccccggggggtgaaga----------ggtaacacagcaagtgtctaatgaggactgagctgggaccagaatcAGGAG--TTTTTTTCATTGCAATATGTATTTTCGTTTATCC-TTTTTTTTCTTCCCTTCTAGCCTCTTTTCCTTTACAAATAGCAGCATACACA-AGGGTAGTTTAAGGCTGTTTCCAAATGGTACCCTGTTGCCCTCTAGAGGTCAAA-AGGGGTAA-TGATCTCTGTCCCT--CGGCCCCGACAGACCCAAACATTCTCCTAAAGGGGCCTAC--CTCCAATTCTTGAGAAGTAATTATCA----TTGGTTCCTC--AGGTTTAACTGAAATGCCTACTACTTTA-----------------------------------------------GT-------------------------------------------AACTACACATTTCCAGCAAAAGTAAAG--AAACGATACTCAATC----TGATTATTCACCACAGACGCCAAGATCATTCTTTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     407780 441 +   1495729 cttccaggc-tgatgaagaaactcagaccccggggggtgaaga----------ggtaacacagcaagtgtctaatgaggactgagctgggaccagaatcaggAG--TTTTTTTCATTGCAATATGTATTTTCGTTTATCC-TTTTTTTTCTTCCTTTCTAGCCTCTTTTCCTTTACAAATAGCAGCATACACA-AGGGTAGTTTAAGGCTGTTTCCAAATGGTACCCTGTTGCCCTCTAGAGGTGAAA-AGGGGTAA-TGATCTCTGTCCCT--CTGCCCCGACAGACCCAAACATTCTCCTAAAGGGGCCTAC--CTCCAATTCTTGAGAAGTAATTATCG----TTAGTTCCTCTTAGGTTTAACTGAAATGCCTACTACTTTA-----------------------------------------------GT-------------------------------------------AACTACACATTTCCAGCAAAAGTAAAG--AAACGATACTCAATC----TTATTATTCACCACAGACGCCAAGATCATTCTTTAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     511629 439 -    863181 CTTCCAGGC-Tgatgaagaaactcagacctcggggggtgaaga----------ggtaacgcagcaagtgtctaatgaggactgagctgggaccagaatcAGGAG--TTTTTTTCATTGCAATATGTATTTTCGTTTATCC-TTTTTTTTCTTCCCTTCTAGCCTCTTTTCCTTTACAAATAGCAGCATACACA-AGGGTAGTTTAAGGCTGTTTCCAAATGGTACCCTGTTGCCCTCTAGAGGTCAAA-AGGGGTAA-TGATCTCTGTCCCT--CGGCCCCGACAGACCCAAACATTCTCCTAAAGGGGCCTAC--CGCCAATTCTTGAGAAGTAATTATCA----TTGGTTCCTC--AGGTTTAACTGAAATGCCTACTACTTTA-----------------------------------------------GT-------------------------------------------AACTACACATTTCCAGCAAAAGTAAAG--AAACGATACTCAATC----TGATTATTCACTACAGACGCCAAGATCATTCTTTAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29658511 448 -  71996105 cttccagtc-tgatgaagaaactgagacc-cggggggtgaagag--tgttcagggtaacgcagcaagtgtctgatgaagactgagctgggaccagaatcAGGAG--TTTTTTTCATTGCAATATGTATTTTCGTTTATCC-TTTTTTTTCTTCCCTTCTAGCCTCTTTTCCTTTACAAATAGCAGCATACACA-AGGGTAGTTTAAGGCTGTTTCCAAATGGTACCCTGTTGCCCTCTAGAGGTGAAA-AGGGGTAA-TGATCTCTGTCCTT--CGGCCCCGACAGACCCAAACATTCTCCTAAAGGGGCCTAC--CTCCAATTCTTGAGAAGTAATTATCA----TTAGTTCCTCTTAGGTTTAACTTAAATGCCTACTACTTTA-----------------------------------------------GT-------------------------------------------AACTACACATTTCCAGCAAAAGTAAAG--AAACGATACTCAATC----TGATTATTCATCACAGACGCCAAGATCATTCTTTAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     391432 439 -    735854 cttccaggc-tgatgaagaaactcagacctcggggggtgaaga----------ggtaacgcagcaagtgtctaatgaggactgagctgggaccagaatcaggAG--TTTTTTTCATTGCAATATGTATTTTCGTTTATCC-TTTTTTTTCTTCCCTTCTAGCCTCTTTTCCTTTACAAATAGCAGCATACACA-AGGGTAGTTTAAGGCTGTTTCCAAATGGTACCCTGTTGCCCTCTAGAGGTCAAA-AGGGGTAA-TGATCTCTGTCCCT--CGGCCCCGACAGACCCAAACATTCTCCTAAAGGGGCCTAC--CGCCAATTCTTGAGAAGTAATTATCA----TTGGTTCCTC--AGGTTTAACTGAAATGCCTACTACTTTA-----------------------------------------------GT-------------------------------------------AACTACACATTTCCAGCAAAAGTAAAG--AAACGATACTCAATC----TGATTATTCACCACAGACGCCAAGATCATTCTTTAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     296815 438 -   1829203 CTTCCAGTG-TGATGAAGAAACTCAGACG-CGGGGGGTGAAGA----------GGTAACGCAGCAAGTGTCTAATGAGGACTAAGCTGGGACCAGAATCAGGAG--TTTTTTTCATTGCAATATGTATTTTCGTTTATCC-TTTTTTTTCTTCCCTTCTAGC--CTTTTCCTTTACAAATAGCAGCATACACA-AGAGTAGTTTAAGGCTGTTTCCAAATGGTACCCTGTTGCCCTCTAGAGGTCAAA-AGGGGTAA-TGATCTCTGTCCCT--CGGCCCCGACAGACCCAAACATTCTCCTAAAGGGGCCTAC--CTCCAATTCTTGAGAAGTAATTATCG----TTAGTTCCTCTTAGGTTTAACTGAAATGCCTACTACTTTA-----------------------------------------------GT-------------------------------------------AACTACATATTTCCAGCAAAAGTAAAG--AAACAATACTCAATC----TGATTATTCACCACAGACGCCAAGATCATTCTTTAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30495177 447 + 171630274 cttccagtt-tgatgaagaaactgagacc-c-gggggtgaagag--tgctcaaggtcatgcagcgagtatctaatgaggactgaactgggaccagaatcaggag--tttttttcattgcaatatatattttctttTATCT-TTTTTTTTCTTCCCTTCTAGCCTCGTTTCCTTTACAAATAGCAGCACACAG--AGGGTAGTTTAAAGCTGTTTTCAAATGGTACCCTGTTGCCCTCTAGGGGCTTTA-ATGGGTAA-TGATCTCTGTCCCT---GGCCCACACAaacc----cactctcctaaaggggcctacctctccaattcttgagaagtaattattg----ttagttcctcttaggtttaactgaaatgcctgctacttta-----------------------------------------------gt-------------------------------------------aactACACATTTCTAGTAAAAGTAAAG--AAATGATACTCAATCTGATTGATTATTCACCACAGACATCAAGATCATTCTTTAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           301598 540 +    515838 cttcatcttctgatgaagaaactgagacc-tggggggtgaagag--tgctcaaggtcatacagcgagtatctaatgaggactgagctgggaccagaatcaggag--tttttttcattgcaatatatattttctttTATC--TTTTTTCTCTTCTCTTCTAGCCTCTTTTCTTTTACAAATAGCAGTACACAGA-AGGGTAATTTAAAGCTGTTTTCAAATGGTACCCTGTTGCCCTCTAGAGGCTTTC-ATGGGTAA-TGATCTCTGTCCCT--CAGCCCACACAAACC----CACTCTCCTAAAGGGGCCTACTTCTCCAATTCTTGAGAAGTAATTATTG----TTAGTTCCTCTTAGGTTTAACTGAAATGTCTACAACTTTACGAAATACACAtttctttttttctttttttcttttttttatttttCGGTAAACCTTTATTGAATCAAAACATGCATATGAAAATGAAAATCGAACTACACATTTCCAGCAAAAGTAAAG--AAATGATACTCGATTTGATTGATTATTCACCACAGACATCAAGATCATTCTTTGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     932526 451 -   1771730 cttccagtc-tgatgaagaaactgagacc-tggggggtgaagag--tgctcaaggtcatgcagcgagtatctaatgaggactgagctgggaccagaatcaggag---ctttttcattgcaatatatattttctttTATC--TTTTTTCTCTTCCCTTCTGGCCTCTTTTCTTTTACAAATAGTAGTACACAGA-AGGGTAGTTTAAAGCTGTTTTCAAATAGTACCCTGTTGCCCTCTAGAGGCTTTA-ATGGGTAA-TGATCTCTGTCCCT--CAGCCCACACAAGTCCAAACACTCTCCTACAGGGGCCTACTTCTCCAATTCTTGAGAAGTAATTATTG----TTAGTTCCTCTTAGGTTTAACTGAAATGCCTACAACTTTA-----------------------------------------------CT-------------------------------------------AACTACACATTTCTAGCAAAAGTAAAT--AAATGATACTCAATCTGATTGATTATTCACCACGGACATC-AGATCATTCTTTAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     111636 454 -    486031 cttccagtc-tgatgaagaacctgagacc-tggggggtgaagag--tgctcaaggtcatgcagcgagtatctaatgaggactgagctgggaccagaatcatgagtttttttTTCATTGCAATATATATTTTCTTTTATC---TTTTTTTCTTCCCTCCTAGCCTCTTTTCCTTTACAAATAGCAGCACACAGA-AGGGTAGTTTAAAGCTGTCTTCAAATGGTACCCTGTTGCCCTCTAGAGGCTTTA-ATGGGTAA-TGATCTCTGTCCCT--CAGCCCACACAAACCCAAACACTCTCCTAAAGAGGCCTACCTCTCCAATTCTTGAGAAGTAATTATTG----TTAGTTCCTCTTAGGTTTAACTGAAATGACTACTACTTTA-----------------------------------------------GT-------------------------------------------AACTACACATTTCTAGCAAAAGTAAAG--AAATGATACTCAATCTGATTGATTATTCACCACAGACGTCAAGATCATTCTTTAG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           346720 392 +  18854210 --------c-tgt-----------------aagggagtgaaaagcttgcttagggtcatatagccagtgcctaacaaggactgagctggaaccaaaattaaggg---ctttttcattgcaatctattttttcttttacC--TTCCCCCCTTTCTCTTCTAGCCTCTTTTCCTTTATAAACAGC----------------------------------------ACACTGTTTCTCACTGTATTTCAGATAGAGGTAACTGATCTCTGCCCCTCTCAGCCTTCACAAACCCAAACATTCTCCTACA-AAGCCTAC--ATCCAGTTCTTAAAGCGTGACTACCACGATTTAGTTCCTTTTAGGTCTAATTAAAATGCCTCTTGCTTTA-----------------------------------------------GT-------------------------------------------CACCATACATTTCCAGCAAAGGTAAAG--AAATGATACTCAACC----AAATTATTCACTGCAGACAGAAAAATCATTCCTTAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58123729 364 -  94987271 AATT--GTG-TGATAGAGCATCTGAGAGA---------GAAGGGCCTATGCAAAGCCACACAGCCAGAG--TAATGAGGACCGCAAAGGGACCCGAATCT------CCCTCTTCCCAGCAAT-------------------------------------------TTTCCCATTGTACAAACCAGCACACAGATAGAAAGAAGCAGGGCGGTTT----------CTCCACTTCTCTCTAGAGGTGGAG-AGGGCTGA-TAGCCTCTGCCCCTTTCTGCTAGAACAGACTCAAG-----------------------CTCCAGTGCTCAGGAGAAAGTTAAAA----TTAGCTCCTCCTGCATCTAA-TGAAAAGTCCATCATTTTG-----------------------------------------------GA-------------------------------------------AACCATTCTTACTTACAGATGGTAAATCCCAATTATACTGAATC----TAATT-TTTATAGCAGACACTAAGATCATCTTTCAG
i mm10.chr17               C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I
e canFam3.chr35            26361945 551 +  26524999 I

a score=9391.000000
s hg38.chr6_GL000254v2_alt  1514492 2 +   4827813 TC-
s panTro5.chr6             30383210 2 + 175400573 TC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30617535 2 + 173848474 TC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     325283 2 +   2037526 TC-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74991745 2 + 122973662 TC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30869949 2 + 172585720 TC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30159405 2 - 170955103 TC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     408221 2 +   1495729 TC-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     512068 2 -    863181 TC-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29658959 2 -  71996105 TC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     391871 2 -    735854 TC-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     297253 2 -   1829203 TC-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30495624 2 + 171630274 TT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           302138 2 +    515838 TT-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     932977 2 -   1771730 TT-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     112090 2 -    486031 TT-
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           347112 2 +  18854210 CA-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58124093 2 -  94987271 TC-
i mm10.chr17               C 0 I 140
s canFam3.chr35            26362496 2 +  26524999 -CA
i canFam3.chr35            I 551 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I

a score=3593484.000000
s hg38.chr6_GL000254v2_alt  1514494 291 +   4827813 TGA----TTTTAGC------------------CTCACGTGGTC----T---------------C-----ACCCGAACA-------------------------------------TTTGTTTTTGGAATTTGGACCTAACTGGTTACCAAACCTGTCTGCAGGTGTGAGATGAAGACTTTTGTGAGTCCTGAGGCCATTTCTCCTGACCTTGTCAAGAAGATCCGTGATTTCCACAGGAAAATACTCACCCTCCCAGAGATGATGAGGATGTTCTCAGGTAAAGGGGAAGGCGCCACAGTTTTCCCCAGTCCCATTAGCTGCCCTCCTGTCTTCCACCCATCTCCATCCTTCTCTGCCCTTGAAACCTGGCTCG
s panTro5.chr6             30383212 291 + 175400573 TGA----TTTCAGC------------------CTCACTTGGTC----T---------------C-----ACCCGAACA-------------------------------------TTTGTTTTTGGAATTTGGACCTAACTGGTTACCAAACCTGTCTGCAGGTGTGAGATGAAGACTTTTGTGAGTCCTGAGGCCATTTCTCCTGACCTTGTCAAGAAGATCCGTGATTTCCACAGGAAAATACTCACCCTCCCAGAGATGATGAGGATGTTCTCAGGTAAAGGGGAAGGCGCCACAGTTTTCCCCAGTCCCATTAGCTGCCCTCCTGTCTTCCACCCATCTCCATCCTTCTCTGCCCTTGAAACCTGGCTCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30617537 291 + 173848474 TGA----TTTCAGC------------------CTCACTTGGTC----T---------------C-----ACCCGAACA-------------------------------------TTTGTTTTTGGAATTTGGACCTAACTGGTTACCAAACCTGTCTGCAGGTGTGAGATGAAGACTTTTGTGAGTCCTGAGGCCATTTCTCCTGACCTAGTCAAGAAGATCCGTGATTTCCACAGGAAAATACTCACCCTCCCAGAGATGATGAGGATGTTCTCAGGTAAAGGGGAAGGCGCCACAGTTTTCCCCAGTCCCATTAGCTGCCCTCCTGTCTTCCACCCATCTCCATCCTTCTCTGCCCTTGAAACCTGGCTCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     325285 291 +   2037526 TGA----TTTCAGC------------------CTCACTTGGTC----T---------------C-----ACCCGAACA-------------------------------------TTTGTTTTTGGAATTTGGACCTAACTGGTTACCAAACCTGTCTGCAGGTGTGAGATGAAGACTTTTGTGAGTCCTGAGGCCATTTCTCCTGACCTTGTCAAGAAGATCCGTGATTTCCACAGGAAAATACTCACCCTCCCAGAGATGATGAGGATGTTCTCAGGTAAAGGGGAAGGCGCCACAGTTTTCCCCAGTCCCATTAGCTGCCCTCCTGTCTTCCACCCATCTCCATCCTTCTCTGCCCTTGAAACCTGGCTCG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74991747 291 + 122973662 TGA----TTTTAGC------------------CTCACTTGGTC----T---------------C-----ACCTGCACA-------------------------------------TTTGTTTTTGGAATTTTGACCTAACTGGTTACCAAACCTGTCTGCAGGTGTGAGATGAAGACTTTTGTGAGTCCTGAGGCCATTTCTCCTGACCTTGTCAAGAAGATCCGTGATTTCCACAGGAAAATACTCACCCTCCCAGAGATGATGAGGGTGTTCTCAGGTAAAGGGGAAGGAGCTGCAGTTTTCCCCAGTCCCGTTAGCTGCCCTCCTGCCTTCCACCCATCTCTATCCTTCTCTGCCCTCGAAACCTGGCTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30869951 291 + 172585720 TGA----TTTTAGC------------------CTCACTTGGTC----T---------------C-----ACCCAAACA-------------------------------------TTTGTTTTTGGAATGTGGACCTAACTGGTTACCAAACCTGTCTGCAGGTGTGAGATGAAGACTTTTGTGAGTCCTGAGGCCATCTCTCCTGACCTTGTCAAGAAGATCCGTGATTTCCACAGGAAAATACTCACCCTCCCAGAGATGATGAGGATGTTCTCAGGTAAAGGGGAAGGGGCCGCAGTTTTCCCCAGTCCCATTAGCTGCCCTCCTGCCTTCCACCCATCTCCATCCTTCTCTGCCCTCGAAACCCGGCTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30159407 291 - 170955103 TGA----TTTTAGC------------------CTCACTTGGTC----T---------------C-----ACCCAAACA-------------------------------------TTTGTTTTTGGAATGTGGACCTAACTGGTTACCAAACCTGTCTGCAGGTGTGAGATGAAGACTTTTGTGAGTCCTGAGGCCATCTCTCCTGACCTTGTCAAGAAGATCCGCGATTTCCACAGGAAAATACTCACCCTCCCAGAGATGATGAGGATGTTCTCAGGTAAAGGGGAAGGGGCCGCAGTTTTCCCCAGTCCCATTAGCCGCCCTCCTGCCTTCCACCCGTCTCCATCCTTCTCTGCCCTCGAAACCCGGCTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     408223 290 +   1495729 TGA----TTTTAGC------------------CTCACTTGGTC----T---------------C-----ACCCAAACA--------------------------------------TTGTTTTTGGAATTTGGACCTAACTGGTTACCAAACCTGTCTGCAGGTGTGAGATGAAGACTTTTGTGAGTCCTGAGGCCATCTCTCCTGACCTTGTCAAGAAGATCCGTGATTTCCACAGGAAAATACTCACCCTCCCAGAGATGATGAGGATGTTCTCAGGTAAAGGGGAAGGGACCGCAGTTTTCCCCAGTCCCGTTAGCTGCCCTCCTGCCTTCCACCCATCTCCATCCTTCTCTGCCCTCGAAACCCAGCTCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     512070 291 -    863181 TGA----TTTTAGC------------------CTCACTTGGTC----T---------------C-----ACCCAAACA-------------------------------------TTTGTTTTTGGAATGTGGACCTAACTGGTTACCAAACCTGTCTGCAGGTGTGAGATGAACACTTTTGTGAGTCCTGAGGCCATCTCTCCTGACCTTGTCAAGAAGATCCGTGATTTCCACAGGAAAATACTCACCCTCCCAGAGATGATGAGGATGTTCTCAGGTAAAGGGGAAGGGGCCGCAGTTTTCCCCAGTCCCATTAGCTGCCCTCCTGCCTTCCACCCATCTCCATCCTTCTCTGCCCTCGAAACCCGTCTCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29658961 290 -  71996105 TGA----TTTTAGC------------------CTCACTTGGTC----T---------------C-----ACCCAAACA--------------------------------------TTGTTTTTGGAATTTGGACCTAACTGGTTACCAAACCTGTCTGCAGGTGTGAGATGAAGACTTTTGTGAGTCCTGAGGCCATCTCTCCTGACCTTGTCAAGAAGATCCGTGATTTCCACAGGAAAATACTCACCCTCCCAGAGATGATGAGGATGTTCTCAGGTAAAGGGGAAGGGGCCGCAGTTTTCCCCAGTCCCGTTAGCTGCCCTCCTGCCTTCCACCCATCTCCATCCTTCTCTGCCCTCGAAACCCAGCTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     391873 291 -    735854 TGA----TTTTAGC------------------CTCACTTGGTC----T---------------C-----ACCCAAACA-------------------------------------TTTGTTTTTGGAATGTGGACCTAACTGGTTACCAAACCTGTCTGCAGGTGTGAGATGAACACTTTTGTGAGTCCTGAGGCCATCTCTCCTGACCTTGTCAAGAAGATCCGTGATTTCCACAGGAAAATACTCACCCTCCCAGAGATGATGAGGATGTTCTCAGGTAAAGGGGAAGGGGCCGCAGTTTTCCCCAGTCCCATTAGCTGCCCTCCTGCCTTCCACCCATCTCCATCCTTCTCTGCCCTCGAAACCCGTCTCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     297255 291 -   1829203 TGA----TTTTAGC------------------CTCACTTGGTC----T---------------C-----ACCCAAATA-------------------------------------TTTGTTTTTGGAATTTGGACCTAACTGGTTACCAAACCTGTCTGCAGGTGTGAGATGAAGACTTTTGTGAGTCCTGAGGCCATCTCTCCTGACCTTGTCAAGAAGATCCGTGATTTCCATAGGAAAATACTCACCCTCCCAGAGATGATGAGGATGTTCTCAGGTAAAGGGGAAGGGGCCGCAGTTTTCCCCAGTCCCGTTAGCTGCCCTCCTGCCTTCCACCCATCTCCATCCTTCTCTGCCCTCGAAACCCGGCTCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30495626 292 + 171630274 TGA--TTTTTTAGC------------------TTCACTGGGTC----T---------------C-----ACCCAAACA-------------------------------------TTTGTTTTTGGAATTTGGAGCTAACTGGTTACC-AACCTACCTGCAGGTGTGAGATGAAGACTTTTGTGAGTCCTGAGGCCATTTCTCCTGACCTTGTCCAGAAGATCCGTGATCTCCACAGGAAAATACTTCCCCTCCCAGAGATGATGAGGATGTTCTCAGGTAAAGGGGAAGGGGCCTCAGTTTTCCCCAGTTCCATTAGCTGCCCTCCTGCCTTCCACCCATCCCCATCCTTCTCTGCCTTCAAAAACTGGCTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           302140 294 +    515838 TGATTTTTTTTAGC------------------TTCACTGGGTC----T---------------C-----ACCCAAACA-------------------------------------TTTGTTTTTGGAATTTGGAGCTAACTGCTTACC-AACCTGTCTGCAGGTGTGAGGTGAAGACTTTTGTGAGTCCTGAGGCCATTTCTCCTGATCTTGTCCAGAAGATCCGTGATCTCCACAGGAAAATACTTCCCCTCCCAGAGATGATGAGGATGTTCTCAGGTAAAGGGAAAGGGGCCTCAGTTTCCCCCAGTTCCATTAGCTGCCCTCCTGCCTTCCACCCGTCTCCATCCTTCTCTGCCTTCAAAAACTGGCTCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     932979 292 -   1771730 TGA--TTTTTTACC------------------TTCACTGGGTC----T---------------C-----ACCCAAACA-------------------------------------TTTGTTTTTGGAATTTGGAGCTAACTGGTTATC-AACCTGTCTGCAGGTGTGAGATGAAGACTTTTGTGAGTCCTGAGGCCATTTCTCCTGACCTTGTCCAGAAGATCCGTGATCTCCACAGGAAAATACTTCCCCTCCCAGAGATGATGAGGATGTTCTCAGGTAAAGGGGAAGGGGCCTCAGTTTTCCCCAGTTCCATTAGCTGCCCTCCTGCCTTCCACCCATCTCCATTCTTCTCTGCCTTCAAAAACTGGCTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     112092 292 -    486031 TGA--TTTTTTAGC------------------TTCACTGGGTC----T---------------C-----ACCCAAACA-------------------------------------TTTGTTTTTGGAATTTGGAGCTACCTGGTTACC-AACCTGTCTGCAGGTGTGAGATGAACACTTTTGTGAGTCCTGAGGCCATTTCTCCTGACCTTGTCCAGAAGATCCGTGATCTCCACAGGAAAATACTTCCCCTCCCAGATATGATGAGGATGTTCTCAGGTAAAGGGGAAGGGGCCTCAGTTTTCCCCAGTTCCATTAGGTGCCCTCCTGCCTTCCACCCATCTCCATCCTTCTCTGCCTTCAAAAACTGGCTCA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           347114 292 +  18854210 CGA----TTTTAGC------------------CTCATTTGATCTATAT---------------C-----ACCCAAACA--------------------------------------TTATTGTTGTAATTTGGACTTAGCTTGTTACC-AACTTGTCTGCAGGTGTGAGATAAAGACTGTTGTGAGGACAAAGACCATTTCTCATGAACTTGTCAAGAAGATCCGCGATCTCCATAGGAAAACACTCGCCCTCCCAGAGATGATGAGGACATTCTCAGGTGAAGAGGAGGGGGCCACGGCTTTCCCCGCTCCCAATAGGTGCTCTTCTGCATTTCACCCATCTCCATCTTTCCCCACCTTTGAGA-TTGGCTCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58124235 332 -  94987271 taa----cttcagctctaaggcatctgaaacgctcctctgacc----tcttacggaagccatac-----actcaaacacacacacatatatatgcacatagataaaatgaaGTATTTTATTTTTGGAATTTGA----------CTTCC-AACTTGTCTGCAGGTACGAGCTGAAGACTTTTGTGAGCCCAGAGGCCATTTCCTCTGATCTTGTCAAGAAGATCCGAAACCTCCACAGGAAAATACTTAGCCTCCCAAAGATGATGAGGACATTTTCAGGTAAAGGGG---------------TTCAGGATCCCATTAGGTG---TTCTACCTTCCACCTGTCTCCATCTTTCCTCAATTTCAATACCTGGTCca
i mm10.chr17               I 140 I 119
s canFam3.chr35            26362498 252 +  26524999 TGA----CCTCTGC------------------CCCTTGCGGCC----T---------------CCACAAACCCGGACT-------------------------------------CTAATCCTGAAAATAAG------ATTAGGGACC-TGGTTGTCCCTAGGTATGAGACAAAGACTTTTGTGAGTCCAGAGTTCATTTCTTCTGACCTTATCAAGAAAATCCGAGATCTGCACAGGAAGGTACTCCTCCTCCCAGAGATGCTGAGGACCTTCTCAGGTAA-----------CCACCG-----------CCTGCTACTTTCCCTTATGCCTCCC-------------CTCCCCTGCCTTTCCAGCCTGTCC--
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I

a score=5499592.000000
s hg38.chr6_GL000254v2_alt  1514785 496 +   4827813 AGACATCTTCCCTCCCCAGAGCCTTCCCTTAGTGATCTCAATTTATTCAGGGGCACTA-TTCCCAGAGCATCTCCTCCACTCCCTAAGGACAGGTGCAGGACTGAGAGTCCAGGAGGGTGAGGACC-CTTCTCCTCCACTAGACCACAGCAGAAGCCGAGTCTT---CTGT-CCTCATTTTCACATTGTACTCAAGTCACCTTGCCCCTGGGGGTGCCTATAAGAAGTAATAAG--TCACAGATCTCTCTTTCTATTTCTGCTTCCCTCAGAAAACTTGGCGCATCATCTGGAAATAGATTCAGGTAAACAGCTTGGGATTTGGGGAGTCA---TTCTTCCATTCATCCATTCAATCCATGGcagcaaacagagcaataaaatgcatgaattctggagcttgattgcttga-gttctcgattccagttcttgctagctctgagacactgggcaagttattaagcc--tct-gtcccacaatattttcttc---------atcagtaaaatg-aaaataaaa
s panTro5.chr6             30383503 496 + 175400573 AGACATCTTCCCTCCCCAGAGCCTTCCCTTAGTGATCTCAATTTATTCAGGGGCACGA-TTCCCAGAGCATCTCCTCCACTCCCTAAGGACAGGTGCAGGACTGAGAGTCCAGGAGGGTGAGGACC-CTTCTCCTCCACTAGACCGCAGCAGAAGCCGAGTCTT---CTGT-CCTCATCTTCACATTGTACTCAAGACACCTTGCCCCTGGGGGTGCCTATAAGAAGTAATAAG--TCACAGATCTCTCTTTCTATTTCTGCTTCCCTCAGAAAACTTGGCGCATCATCTGGAAATAGATTCAGGTAAACAGCTTGGGATTTGGGGAGTCA---TTCTTCCATTCATCCATTCAATCCATGGcagcaaacagagcaataaaatgcatgaattctggagcttgattgcttga-gttctcgattccagttcttgctagctctgagacactgggcaagttattaagcc--tct-gtcccacaatattttcttc---------atcagtaaaatg-aaaataaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30617828 496 + 173848474 AGACATCTTCCCTCCCCAGAGCCTTCCCTTAGTGATCTCAATTTATTCAGGGGCACGA-TTCCCAGAGCATCTCCTCCACTCCCTAAGGACAGGTGCAGGACTGAGAGTCCAGGAGGGTGAGGACC-CTTCTCCTCCACTAGACCGCAGCAGAAGCCGAGTCTT---CTGT-CCTCATCTTCACATTGTACTCAAGACACCTTGCCCCTGGGGGTGCCTATAAGAAGTAATAAG--TCACAGATCTCTCTTTCTATTTCTGCTTCCCTCAGAAAACTTGGCGCATCATCTGGAAATAGATTCAGGTAAACAGCTTGGGATTTGGGGAGTCA---TTCTTCCATTCATCCATTCAATCCATGGcagcaaacagagcaataaaatgcatgaattctggagcttgattgcttga-gttctcgattccagttcttgctagctctgagacactgggcaagttattaagcc--tct-gtcccacaatattttcttc---------atcagtaaaatg-aaaataaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     325576 495 +   2037526 AGACATCTTCCCTCCCCAGAGCCTTCCCTTAGTGATCTCAATTTATTCAGGGGCACTA-TTCCCAGAGCATCTCCTCCACTCCCTAAGGACAGGTGCAGGACTGAGAGTCCAGGAGGGCGAGGACC-CTTCTCCTTCACTAGACCACAGCAGAAGCCGAGTCTT---CTGT-CCTCATCTTCACATTGTACTCAAGACACCTTGCCCCTGGGGGTGCCTATAAGAAGTAATAAG--TCACAGATCTCTCTTTCTATTTCTGCTTCCCTCAGAAAACTTGGCGCATCATCTGGAAATAGATTCAGGTAAACAACTTGGGATTTGGGGAGTCA---TTCTTCCATTCATCCATTCAATCCATGG-AGCAaacagagcaataaaatgcatgaattttggagcttgattgcttga-gttctcgattccagttcttgctagctctgagacactgggcaagttattaagcc--tct-gtcccacaatattttcttc---------atcagtaaaatg-aaaataaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74992038 492 + 122973662 AGACATCTTCCCTCCCCAGAGCC-TCCCTTAGTGATCTCAATTTATTCAGGGGCACCA-TTCCCAGAGCATCTCCTCCACTCCCTAAGGACAGGTGTGGGACT--GAGTCCAGGAGGGTGAGGACC-CTTCTCCTCCACTAGACCACAGCAGAAGCTGAGTCTT---CTGT-CCTCATCTTCACATTGTACTCAAGACACCTTGCCCCTGGGGGTGCCTATAAGAAGTAATAAG--TCACAGATCTCTCTTTC--TTTCCGCTTCCCCCAGAAAACTTGGCGCATCATCTGGAAATAGATTCAGGTAAACAGCTCGGGATTTGGGGAGTCA---TTCTTCCATTCACCTATTCAATCCATGGcagcaaacagagcaataaaatgcatgaattctggagcttgattgcttga-gttcttgattccagctcttgctaactctgagacactgggcaagttattaagcc--tct-gtcccacaatattttcttc---------atcagtaaagtgaaaaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30870242 476 + 172585720 AGACATCTTCCCTCCCCAGAGCCTTCCCTTAGTGATCTCAGTTAATTCAGGGGCACCA-TTCCCAGAGCATCTCCTCCACTCCCTAAGGACAGGTGCGGGACTGAGATTCCAGGAGGGTGAGGACCACTTCTCCTCCACTAGACCACAGCAGAAGCCAAGGCTT---CTGT-CCTCATCTTCACATTGTACTCAAGACACCTTGCCCCTGGGGGTGCCTATAAGAAGTAATAAG--TCACAGATCTCTTTTTCTATTTCTGCTTCCCACAGAAAACTTGGCGCATCATCTGGAAATAGATTCAGGTAAACAGCTTGGGACTTGGGGAGTCA---TTCTTCCATTCGCCCATTCAGTCCATGGCAGCAAACAGAGCAATAAAATGCATTAATTCTGGAGCCTCATTGCTTGA-GTT---------------------ctctgagacactgggcaagttattaagcc--tct-gtcccgcaatattttcttc---------atcagtaaaatg-aaaaaaaaa
i rheMac8.chr4             C 0 I 3
s macFas5.chr4             30159698 476 - 170955103 AGACATCTTCCCTCCCCAGAGCCTTCCCTTAGTGATCTCAGTTAATTCAGGGGCACCA-TTCCCAGAGCATCTCCTCCACTCCCTAAGGACAGGTGCGGGACTGAGATTCCAGGAGGGTGAGGACCACTTCTCCTCCACTAGACCACAGCAGAAGCCAAGGCTT---CTGT-CCTCATCTTCACATTGTACTCAAGACACCTTGCCCCTGGGGGTGCCTATAAGAAGTAATAAG--TCACAGATCTCTTTTTCTATTTCTGCTTCCCACAGAAAACTTGGCGCATCATCTGGAAATAGATTCAGGTAAACAGCTTGGGACTTGGGGAGTCA---TTCTTCCATTCGCCCATTCAGTCCATGGCAGCAAACAGAGCAATAAAATGCATTAATTCTGGAGCCTCATTGCTTGA-GTT---------------------ctctgagacactgggcaagttattaagcc--tct-gtcccgcaatattttcttc---------atcagtaaaatg-aaaaaaaaa
i macFas5.chr4             C 0 I 3
s macNem1.NW_012012100v1     408513 476 +   1495729 AGACATCTTCCCTCCCCAGAGCTTTCCCTTAGTGATCTCAATTAATTCAGGGGCACCA-TTCCCAGAGCATCTCCTCCACTCCCTAAGGACAGGTGCGGGACTGAGATTCCAGGAGAGTGAGGACCACTTCTCCTCCACTAGACCACAGCAGAAGCCAAGGCTT---CTGT-CCTCATCTTCACATTGTACTCAAGACACCTTGCCCCTGGGGGTGCCTATAAGAAGTAATAAG--TCACAGATCTCTTTTTCTATTTCTGCTTCCCACAGAAAACTTGGCGCATCATCTGGAAATAGATTCAGGTAAACAGCTTGGGACTTGGGGAGTCA---TTCTTCCATTCGCCCATTCAGTCCATGGcagcaaacagagcaataaaatgcattaattctggagcctcattgcttga-gtt---------------------ctctgagacactgggcaagttattaagcc--tct-gtccggcaatattttcttc---------atcagtaaaatg-aaaaaaaaa
i macNem1.NW_012012100v1   C 0 I 3
s cerAty1.NW_012002535v1     512361 485 -    863181 AGACATCTTCCCTCCCCAGAGCCTTCCCTTAGTGATCTCAGTTAATTCAGGGGCACCA-TTCCCAGAGCATCTCCTCCACTCCCTAAGGACAGGTGCGGGACTGAGATTCCAGGAGGGTGGGGACCACTTCTCCTCCACTAGACCACAGCAGAAGCCAAGGCTT---CTGT-CCTCATCTTCACATTGTACTCAAGACACCTTGCCCCTGGGGGTGCCTATAAGAAGTAATAAG--TCACAGATCTCTTTTTCTATTTCTGCTTCCCACAGAAAACTTGGCGCATCATCTGGAAATAGATTCAGGTAAACAGCTTGGGACTTGGGGAGTCA---TTCTTCCATTCACCCATTCAATCCATGGCAGCAAACAGAGCAATAAAATGCATTAATTCTGGAGCCTCATTGCTTGA-GTT---------------------ctctgagacactgggcaagttattaagcc--tct-gtcccgcaatatagtcttcaaaaaaaaaaaaaaaaaaaaa-aaaaaaaaa
i cerAty1.NW_012002535v1   C 0 I 3
s chlSab2.chr17            29659251 476 -  71996105 AGACATCTTCCCTCCCCAGAGCCTTCCCTTAGTGATCTCAATTAATTCAGGGGCACCA-TTCCTAGAGCATCTCCTCCACTCCCTAAGGACAGGTGCGGGACTGAGATTCCAGGAGGGTGAGGACCACTTCTCCTCCACTAGACCACCGCAGATGCCAAGGCTT---CTGT-CCTCATCTTCACATTGTATTCAAGACACCTTGCCCCTGGGGGTGCCTATAAGAAGTAATAAG--TCACAGATCTCTCTTTCTATTTCTGCTTCCCTCAGAAAACTTGGCGCATCATCTGGAAATAGATTCAGGTAAACAGCTTGGGACTTGGGGAGTCA---TTCTTCCATTCGCCCATTCGGTCCATGGcagcaaacagagcaataaaatgcatgaattctggagcttgattgcttga-gtt---------------------ctctgagacactgggcaagttattaagcc--tct-gtcccacaatattttcttc---------accagtaaaatg-aaaaaaaaa
i chlSab2.chr17            C 0 I 14
s manLeu1.NW_012107142v1     392164 476 -    735854 AGACATGTTCCCTCCCCAGAGCCTTCCCTTAGTGATCTCAGTTAATTCAGGGTCACCA-TTCCCAGAGCATCTCCTCCACTCCCTAAGGACAGGTGCGGGACTGAGATTCCAGGAGGGTGGGGACCACTTCTCCTCCACTAGACCACAGCAGAAGCCAAGGCTT---CTGT-CCTCATCTTCACATTGTACTCAAGACACCTTGCCCCTGGGGGTGCCTATAAGAAGTAATAAG--TCACAGATCTCTTTTTCTATTTCTGCTTCCCACAGAAAACTTGGCGCATCATCTGGAAATAGATTCAGGTAAACAGCTTGGGACTTGGGGAGTCA---TTCTTCCATTCACCCATTCAATCCATGGcagcaaacagagcaataaaatgcattaattctggagcctcattgcttga-gtt---------------------ctctgagacactgggcaagttattaagcc--tct-gtcccgcaatattttcttc---------atcagtaaaatg-aaaaaaaaa
i manLeu1.NW_012107142v1   C 0 I 2247
s colAng1.NW_012115577v1     297546 476 -   1829203 AGATATCTTCCCTCCCCAGAGCCTTCCCTTAGTGATCTCAATTAATTCAGGGGCACCA-TTCCCAGAGCATCTCCTCCACTCCCTAAGGACAGGTGCGGGACTGAGATGCCAGGAGGGTGAGGACCACTTCTCCTCCACTAGACCACAGCAGAAGCCAAGGCTT---CTGT-CCTCATCTTCACATTGTACTCGAGACACCTTGCCCCTGGGGGTGCCTATAAGAAGTAATAAG--TCACAGATCTCTCTTTCTATTTCTGCTTCCCTCAGAAAACTTGGCGCATCATCTGGAAATAGATTCAGGTAAACAGCTTGGGACTTGGGGAGTCA---TTCTTCCATTCACCCATTCAATCCATGGcagcaaacagagcaataaaatgcatgaattctggagcttgattgcttga-gtt---------------------ctctgagacactgggcaagttattaagcc--tct-gtcccacaatattttcttc---------atcagtaaaatg-aaaaaaaaa
i colAng1.NW_012115577v1   C 0 I 14
s calJac3.chr4             30495918 495 + 171630274 AGACATCTTCCCTCCCCAGATCCTTCCCTTAGTGATCTCAACTGACTCAGGGGCACCA-TTCCCAGAGCATCTCTTCCACTCCCTAAGGACAGGTTCTGGACTGAGAGTCCGGGAGGGCAAGGACCACTTCTCCTCTACTAGTCCACAGCAGAAGCCACAGCCT---CTGT-CCTCATCTTCACACTGTACTCGAGACACCTTGCCCCTGGGGATGCCTGTAAGAAGTAATAAG--TCACAGATCTCTCTTTCTATTTCTACTTCCCTTAGAAAACTTGGTGCATCATCTGGAACCAGATTCAGGTAAACAGCCTGGGATTTGGGGAGTCA---TTCTTCCATTCACCCATTCAGTCCATGGCAGCAAATAGAGCAAAACAATgcatgaattctggagcgcgattgcgtgg-gttcctgatt-cagcttttgctagctctgagacagtgggctagttattaagcc--tct-gtcccacaatat-ttcttc---------atcagtaaaatg-aagggaaaa
i calJac3.chr4             C 0 I 3
s saiBol1.JH378341           302434 495 +    515838 GGACATCTTCCCTCCTCAGATCCTTCCCTTAGTGATCTCAACTGACTCAGGGGCGCCA-TTCCCAGAGCATCTCTTCCACTCCCTAAGGACAGGTTCTGGACTGAGAGTCCAGGAGGGTGAGGACCACTTCTCCTCCACTAGTCCACAGCAGAAGCCACAGCCT---CTGT-CCTCATCTTCATGTTGTACTCAAGACGCCTTGCCCCTGGGGATGCCTATAAGAAGTAATAAG--TCACAGATCTCTCTTTCTATTTCTGCTTCCCTCAGAAAACTTGGTGCATCATCTGGAAACAGATTCAGGTAAACAGCTTGGGATTTGGGAAGTCA---TTCTTCTATTCACCCATTCAGTCCATGGCAGCAAACAGAGCAATACAATgcatgagttctcaagcgtggttgcttggaatccctgatt-cagcttcgg-tagctctgagacactgggctagttattaagcc--tct-gtctcacaatat-ttcttt---------atcagtaaaatg-aaaggggaa
i saiBol1.JH378341         C 0 I 3
s cebCap1.NW_016107755v1     933271 492 -   1771730 AGACATCTTCCCTCCCCAGATCCTTCGCTTAGTGATCTCAACTGACTCAGGGGCACCA-TTCCCAGAGCATCTCTTCCACTCCCTAAGGACAGATTCTGGACTGAGAGTCCAGGAGGGTGAGGACCACTTCTCCTCCACTAGTCCACAGCAGAAGCCACAGCCT---CTGT-CCTCATCTTCACATTGTACTCAAGACACCTTGCCCCTGGGGATACCTGTAAGAAGTAATAAG--TCACAGATCTCTCTTTCTATTTCTGCTTCCCTCAGAAAACTTGGTGCATCATCTGGAAACAGATTCAGGTAAACAGCTTGGGATTTAGG--GTCA---TTCTTCCATTCACCCATTCAGTCCATGGCAGCAAACAGAGCAATACAATgcatgaattctggagcgtgattgcttgg-gttcctgatt-cagctttgg-tagctctgagacactgagctagttattaagcc--tct-gtcccacagtat-ttcttt---------atcagtaaaatg-aaggggaaa
i cebCap1.NW_016107755v1   C 0 I 3
s aotNan1.NW_018496901v1     112384 495 -    486031 AGACATCTTCCCTCCCCAGATCCTTCCCTTAGTGATCTCAACTGACTCAGGGGCACCA-TTTCCAGAGCATCTCTTCCACTCCCTAAGGACAGGTTCTGGACTGAGAGTCCAGGAGGCTGAGGACCACTTCTCCTCCACTAGTCCACAGCAGAAGCCACAGCCT---CTGT-CCTCAACTTCACATTGTACTCAAGACACCTTGCCCCTGGGGATGCCTGTAAGAACTAATAAG--TCACAGATCTCTCTTTCTATTTCTGCTTCCCTCAGAAAACTTGGTGCATCATCTGGAAACAGATTCAGGTAAACAGCCTGGGATTTGGGGAGTCA---TTCTTCCATTCACCCATTCAGTCCAtggcagcaaacagagcaacacaatgcatgaattctggagcgtgattgcttgg-gttcctgatt-cagcttttgctagctctgagacactgggctagttattaagcc--tct-gtcccacaatat-ttcttc---------atcagtaaaatg-aagggaaaa
i aotNan1.NW_018496901v1   C 0 I 3
s otoGar3.GL873550           347406 484 +  18854210 AGACATTATCCCTCCCCAAAGTCTGCCCTCAGTGATCCCAGTTTACTCAGGGGCACCATTTCCTAGAGTATCTCCTCTGCTCCCTAAAGACAGGCACTGGACTGGGCGTCCAGCAACGTGAAGACTACTTCTGTTCCATTAGAACATACTAGAAACCAAGTCTTCTCCTGT-CCCTGTCCTCAT----------------CCTGCCTTTAGAGGTGCCTGTAAGAAATAATAAG--TCACAGATCTTTCTTTCTATTTCTGCTTCCCCCAGAAAACTTGGCGCATCATCTGGAGACAGATTCAGGTAAACAGTGGGGAACTGGGGGAGCTG---TTCTTTCAGTCATCTATTCAATTCATGGCAGGAaacagagcagttaaatgcatgcatccttgagccagagtgcatgg-gttccctattctagctcttgctaaatatgagacactgggggaaatactaagccttttt-gtcccatagt---ttcttc---------atcaacaaaatg-aaaaaaata
i otoGar3.GL873550         C 0 I 9
s mm10.chr17               58124686 394 -  94987271 AAGCATCTTCTCTCCTCATA-CCTTCCCACAA-GACCTCACTCTACTCAGGGAGCAGT-TCCCCAGATTGTGGTCTCCCCTGTCCAAGGATAGAGGCC---CTGGAGGTCCAGGCAGGTGAGGCACACTTCTCGT--------------------------------GTAT-CCCTGTCCTCACGCTCTAGCCAGGACACCCTCCCCTTGGGAGTATCTGTAGGAGATATTAAGTCTCACAGATCTTT------GTTTCTCCTTTCTTCAGAAAACTTGATGCAGCATCTGGAGACAGATTCAGGTAATCAACAAGGGCTCTGGGGGGTCAGGGTTTCCCCTGATACCCATTCCACCCATGGCCACAAAC--AGCAATGAGATGTGCTTA-CCTGACACCTGACTGCTTGG-GGT---------------------CT---------TGGGT---CTATTAACCC--TT---------------TTCTTC---------CTA-------------------
i mm10.chr17               I 119 C 0
s canFam3.chr35            26362750 452 +  26524999 AGGTGTCTTCCCTCCT-GGAGCC-TCCCTTGGGGATCCGGCTCTGCTGGGAGGACTGG-CACCCAGCACAGCTTCTCTACCTC----AGACAATCACTGTACTGAGTGTCCAGGCGGGTCTGGC-----------------AACTGTGGCAGAAGGCACAGAGC---AGGTGCCCTGTCCTCACA-TGGGTCCAGGGC----TGCCCT--GGGGCACCTGTAAGAGATAACAAG--TCACACATTGCT----CTGTTTCTGCTTCCCTCAGAAAACCCGGCACATCATCTGGAGACAGACTCAGGTAAATGGCTGGGGGCTCAAGGATCCA---TTCTGCCTTCCATCTGTTAGTTCCCAGGcagcaaacagagccgttacatacatggggtctgcagcctgactgctggg-ctc---tgttctagtgctggcaggtgatgagacactgggcaagccaggaaggc--tttccttcca-------gttctc---------acctctaaaatg-gaaaat---
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I

a score=2133206.000000
s hg38.chr6_GL000254v2_alt  1515281 191 +   4827813 gtact-gtacctgtcccataa------gtagctgtgaggacaaaataaattaatacatgcaaagagcttagtatattacctgac-tcatagtaagtgctcaattaatgtCATCTACTTGTGTAGATATTACTCGTT--GAAAAATACTTATCAAGCCCTAGTTTTT----------TGAG-AGCATTGTGCTGGGCTCTCTACTGATTTGAA
s panTro5.chr6             30383999 192 + 175400573 gtact-gtacctgtcccataa------gtagctgtgaggacaaaataaattaatacatgcaaagagcttagtatattacctgac-tcatagtaagtgctcaattaatgtCATCTAATTGTATAGATATTACTCGTT--GAAAAATACTTATCAAGCCCTAGTTTTT----------TGAGCAGCATTGTGCTGGGCTCTCCACTGATTTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30618324 192 + 173848474 gtact-gtacctgtcccataa------gtagctgtgaggacaaaataaattaatacatgcaaagagcttagtatattacctgac-tcatagtaagtgctcaattaatgtCATCTAATTGTATAGATATTACTCGTT--GAAAAATACTTATCAAGCCCTAGTTTTT----------TGAGCAGCATTGTGCTGGGCTCTCCACTGATTTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     326071 192 +   2037526 gtact-gtacctgtcccataa------gtagctgtgaggacaaaataaattaatacatgcaaagagcttagtatattacctgac-tcatagtaagtgctcaattaatgtCATCTACTTGTATAGATATTACTCGTT--GAAAAATACTTATCAAGCCCTAGTTTTT----------TGAGCAGCATTGTGCTGGGCTCTCTACTGATTTGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74992530 192 + 122973662 gtact-gtacctgtcccataa------gtagctgtgaggacaaaataaattaatacatgcaaagagcttagtatattacctgac-tcatagtaagtgctcaattaatgtCATCTACTTGTATAGCTATTACTCGTT--GAAAAATACTTATCAAGCCCTAGTTTTT----------TGGGCAGCATTGTGCTGGACTCTTGATTGATTTGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30870721 192 + 172585720 gtact-atacctgtcccataa------gtagctgtgaggactaaatgaattcatacatgcagagagcttagtgtattacctgac-tcatagtaagtgctcaattaatgtCATCTACTTATATAGATGTTACTCGTT--GAAAAATACTTATCAAGTCTTAGTTTTT----------TGAGCAGCATTGTGCTGGACTCTTTATTGATTTGAA
i rheMac8.chr4             I 3 C 0
s macFas5.chr4             30160177 192 - 170955103 gtact-atacctgtcccataa------gtagctgtgaggactaaatgaattaacacatgcagagagcttagtgtattacctgac-tcatagtaagtgctcaattaatgtCATCTACTTGTATAGATGTTACTCGTT--GAAAAATACTTATCAAGTCTTAGTTTTT----------TGAGCAGCATTGTGCTGGACTCTTTATTGATTTGAA
i macFas5.chr4             I 3 C 0
s macNem1.NW_012012100v1     408992 192 +   1495729 gtact-atacctgtcccataa------gtagctgtgaggactaaatgaattaatacatgcagagagcttagtgtattacctgac-tcatagtaagtgctcaattaatgtCATCTACTTGTATAGATGTTACTCGTT--GAAAAATACTTATCAAGTCTTAGTTTTT----------TGAGCAGCATTGTGCTGGACTCTTTATTGATTTGAA
i macNem1.NW_012012100v1   I 3 C 0
s cerAty1.NW_012002535v1     512849 192 -    863181 gtact-atacctgtcccataa------gtagctgtgaggactaaatgaattaatacatgcagagagcttagtgtattacctgac-tcatagtaagtgctcaattaatgtCATCTACTTGTATAGATGTTACTCGTT--GAAAAATTCTTATCAAGTCTTAGTTTTT----------TGAGCAGCATTGTGCTGGACTCTTTATTGATTTGAA
i cerAty1.NW_012002535v1   I 3 C 0
s chlSab2.chr17            29659741 192 -  71996105 gtact-gtacctgtcccataa------gtagctgtgaggactaaatgaattaatacctgcagagagcttagtgtattacctgac-tcatagtaagtgctcaattaatgtCATCTACTTGTATAGATATTACTGGTT--GAAAAATATTCATCAAGTCCTAGTTTTT----------TTAGCAGTATTGTGCTGGACTCTTTATTGATTTGAA
i chlSab2.chr17            I 14 C 0
s manLeu1.NW_012107142v1     394887 192 -    735854 gtact-atacctgtcccataa------gtagctgtgaggactaaatgaattaatacatgcagagagcttagtgtattacctgac-tcatagtaagtgctcaattaatgtCATCTACTTGTATAGATGTTACTCGTT--GAAAAATACTTATCAAGTCTTAGTTTTT----------TGAGCAGCATTGTGCTGGACTCTTTATTGATTTGAA
i manLeu1.NW_012107142v1   I 2247 C 0
s colAng1.NW_012115577v1     298036 192 -   1829203 gtact-gtacctgtcccataa------gtagctgtgaggactaaatgaattaatacatgcagagagcttagtgtattacctgac-tcatagtaagtattcagttaatgtCATCTACTTGTATAGATATTACTGGTT--GAAAAATACTTATCAAGTCCTAGTTTTT----------TGAGCAGTATTGTGCTGGACTCTTTATTGATTTGAA
i colAng1.NW_012115577v1   I 14 C 0
s calJac3.chr4             30496416 189 + 171630274 gtact-gtacctgtcccataa------gtagctgtgaggacaaaatgaattaatacaggcccagagcttagtatattacctgac-tcacagtaagtgcttaattag-gttatCTACTTACATAGATATCACTCGTT--AAAAAATATTTATCAAGCCCTAGATTTC----------TAAGCAGCATTGCGCTGGACTCT--ATTGATTTGAA
i calJac3.chr4             I 3 C 0
s saiBol1.JH378341           302932 190 +    515838 ctact-atacctgtcccataa------gtagctgtgaggacaaaatgaattaacacatgcaaagagcttagtatactacctgac-tcatagtaagtgcttaattaatgtCATCTACTTGTATAGATAATACTCGTT--TAAAAATATTTATCAAGCCCTAGATTTC----------TAAGCAGCATTGTGCTGGACTCT--ATCGATTTGAA
i saiBol1.JH378341         I 3 C 0
s cebCap1.NW_016107755v1     933766 192 -   1771730 gtact-gtacctgtcccataa------gtagctgtgaggacaaaatgaattaacacatgcaaagagcttagtatattacctgac-tcatagtaagtgcttaattaatgtCATCTACTTGTATAGATAATACTGGTTAAAAAAAATATTTATCAAGCCCTAGATTTC----------TAAGCAGCATTGTGCTGGACTCT--ATTGATTTGAA
i cebCap1.NW_016107755v1   I 3 C 0
s aotNan1.NW_018496901v1     112882 190 -    486031 gtact-gtacctgtcccataa------gtagctgtgaggacaaaatgaattaatacaggcaaagagcttagtatattacttgac-tcatagtaagtgcttaattaaggtCATCTACTTGTATAGACATTACTCGTT--AAAAAATATTTATCAAGCCCTAGATTTC----------TAAGCAGCATTGTGCTGGACTCT--ATTGATTTGAA
i aotNan1.NW_018496901v1   I 3 C 0
s otoGar3.GL873550           347899 153 +  18854210 gtact-gcacctactccataaatagctgtagctgtgaggattaaatgaattaatacatgcaaagagcttagtatagtatctggc-atatagtaaatgctcagctaatgttagttGCTTGTA---------------------------------------------------------ACCAGCATTGTGCTAGACTCTTTATAGACTTGAG
i otoGar3.GL873550         I 9 C 0
s mm10.chr17               58125080 181 -  94987271 CCATT-GCTcctacactataa------atccatttgagcatttaatgaat----gcatgcaaggacctccgcacagtacctgac-acacagtgaatgctaaa-taTTCTCAGTTACATGTAGA-----CACTCATC---CATAATATGTATTAAGCCCCTGAGCTT----------TGTCCAGAATTATGCTAGATTCTCTGTAGATTTGAA
i mm10.chr17               C 0 I 256
s canFam3.chr35            26363202 196 +  26524999 gcaccagtgccaaccccataa------gtaggcacgagag--gaatgcatggatacatg-gaagagcttagtacagtacctggcaccacagtatgtgctGA--TAGTGTTCT-TGCTTGCACGGATATCATTTCCT--CAAAGGTATTTATGCAGTTGTTGGTTTTGTGTGTGTTCTGCCCAGCATTGTGCCAGACTCT--GCGGTCTTGAA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I

a score=125714.000000
s hg38.chr6_GL000254v2_alt  1515472 26 +   4827813 CAAAAAATGTGCAATTT-TTTAAAAAT
s panTro5.chr6             30384191 26 + 175400573 CAAAAAATGTGCAATTT-TTTAAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30618516 26 + 173848474 CAAAAAATGTGCAATTT-TTTAAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     326263 26 +   2037526 CAAAAAATGTGCAATTT-TCTAAAAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74992722 26 + 122973662 CAAATAATGTGCAATTT-TTAAAAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30870913 24 + 172585720 CA---AATGTGCAATTTTAAAAAAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30160369 24 - 170955103 CA---AATGTGCAATTTAAAAAAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     409184 23 +   1495729 CA---AATGTGCAATTT-AAAAAAAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     513041 24 -    863181 CA---AATGTGCAATTTAAAAAAAAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29659933 24 -  71996105 CA---AATGTGCAATTTTTTTAAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     395079 23 -    735854 CA---AATGTGCAA-TTTAAAAAAAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     298228 24 -   1829203 CA---AATGTGCAATTTTTTAAAAAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30496605 26 + 171630274 CAAATAATGTTCGATTT-TTTTAAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           303122 22 +    515838 CAAATAATGTTCAAATT-TT----AAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     933958 24 -   1771730 CAAATAATGTTCAATTT-TT--AAAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     113072 24 -    486031 CAAACAATGTTCAATTT-TT--TTAAT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           348052 27 +  18854210 TAAATACTGTATGATTTTTTTTAAAAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26363398 26 +  26524999 CAAATATTGTCTAATTT-TTAAAAAAT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58125261 256 -  94987271 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I

a score=3568778.000000
s hg38.chr6_GL000254v2_alt  1515498 363 +   4827813 CACATTTATTTTTAAATTGGTGCTTAATTTAGAAGTTGTTTCCATAAGCATCACCTCACTCACTCTGGT----AT-AGGTAagtgcttttcaa--acttaatatgcagaaacgtctcctagggatcctgtt-aaaatgcagattctgattt-agtaggg-tgggatggggcccaatattctgcatttc-taacaaacacccaggtggtgg----ggatgctgctggtccctcccgctgcactttgagaagcaaATCCTTAACAGCACCACTT----GCTGATTAGGTAGAAGGGC---------------------------------------GGTTCAGAGA-AGTGGCCCAAT-GGCAGGCTGCCCAAGTCCAGTACTCCTTCTGCCTC--------CCACGTGCGTTGCCTGCTCTAGGAAC-ATCTG
s panTro5.chr6             30384217 363 + 175400573 CACATTTATTTTTAAATTGGTGCTTAATTTAGAAGTTGTTTCCATAAGCATCACCTCACTCACTCTGGT----AT-AGGTAagtgcttttcaa--acttaatatgcagaaacgtctcctagggatcctgtt-aaaatgcagattctgattt-agtaggg-tgggatcgggcccaatattctgcatttc-taacaaactcccaggtagtgg----ggatgctgctggtccctcccgccgcactttgagaagcaaATCCTTAACAGCACCACTT----GCTGATTAGGTAGAAGGGC---------------------------------------GGTTCAGAGA-AGTGGCCCAAT-GGCATGCTGCCCAAGTCCAGTACTCCTTCTGCCTC--------CCACGTGCGTTGCCTGCTCTAGGAAC-ATCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30618542 363 + 173848474 CACATTTATTTTTAAATTGGTGCTTAATTTAGAAGTTGTTTCCATAAGCATCACCTCACTCACTCTGGT----AT-AGGTAagtgcttttcaa--acttaatatgcagaaacgtctcctagggatcctgtt-aaaatgcagattctgattt-agtaggg-tgggatcgggcccaatattctgcatttc-taacaaactcccaggtagtgg----ggatgctgctggtccctcccgccgcactttgagaagcaaATCCTTAACAGCACCACTT----GCTGATTAGGTAGAAGGGC---------------------------------------GGTTCAGAGA-AGTGGCCCAAT-GGCATGCTGCCCAAGTCCAGTACTCCTTCTGCCTC--------CCACGTGCGTTGCCTGCTCTAGGAAC-ATCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     326289 363 +   2037526 CACATTTATTTTTAAATTGGTGCTTAGTTTAGAAGTTGTTTCCATAAGCATCACCTCACTCACTCTGGT----AT-AGGTAagtgcttttcaa--acttaatatgcagaaacgtctcctagggatcctgtt-aaaatgcagattctgattt-agtaggg-tgggatggggcccaatattctgcatttc-taacaaactcccaggtggtgg----ggatgctgctggtccctcccgctgcactttgagaagcaaATCCTTAACAGCACCACTT----GCTGATTAGGTAGAAGGGC---------------------------------------GGTTCAGAGA-AGTGGCCCAAT-GGCAGGCTGCCTAAGTCCAGTACTCCTTCTGCCTC--------CCACGTGCGTTGCCTGCTCTAGGAAC-ATCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74992748 362 + 122973662 CACATTTATTTTTAAATTGGTGCTTAATTTAGAAGTTGTTTCCATAAGCATCATCTTACTCACTCTGGT----AT-AGATAagtgcttttcaa--acttaatatgcagaaaggtctcctagggatcctgtt-aaagtgcagtttctgattt-agtagtg-tgggatggggcccagtattctgcatttc-taacaaactcccaggcggtga----ggatgctgctggtccctcctcctgcactttgagaagcaaATCCTTAG-AGCACCACTC----GCTGATTAGGTAGAAGGGC---------------------------------------GGTTCAGAGA-AGTGGCCCAAT-GTCAGGCTGCCCAAGTCCGGTACTCCTTCTGCCTC--------CCACGCGCGTTGCCTGCTCTAGGAAC-ATCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30870937 352 + 172585720 CACATTTATTTTTAAATTGGTGCTTAATTTCGAAATTGTTTCCATAAGCATCAC----CTCACTCTGGT----AT-AGATcagtgcttttcaa--acttaacatgcagaaagttctcctagggatcctgtt-aaaatgcagattctgattt-agtaggg-tgggatcgggcccaatattctgcatttc-taacaagctcccaggcgatgg----ggatgctgctggtccctccctgtgcactttgagaagcaaATCCTTA-CAGCACCACTG----GCTGATTAGGTAGAAGGGC---------------------------------------GGTTCAGA-------GCCCAAT-GGCAGGCTGCCCAAGTCCAGTATTCCTTCTGCCTC--------CCACGCGCCTGGCCTGCTCTAGGAAC-ATCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30160393 356 - 170955103 CACATTTATTTTTAAATTGGTGCTTAATTTCGAAATTGTTTCCATAAGCATCACCTCACTCACTCTGGT----AT-AGATcagtgcttttcaa--acttaacatgcagaaagttctcctagggatcctgtt-aaaatgcagattctgattt-agtaggg-tgggatcgggcccaatattctgcatttc-taacaagctcccaggcgatgg----ggatgctgctggtccctccctgtgcactttgagaagcaaATCCTTA-CAGCACCACTG----GCTGATTAGGTAGAAGGGC---------------------------------------GGTTCAGA-------GCCCAAT-GGCAGGCTGCCCAAGTCCAGTATTCCTTCTGCCTC--------CCACGCGCCTGGCCTGCTCTAGGAAC-ATCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     409207 362 +   1495729 CACATTTATTTTTAAATTGGTGCTTAATTTCGAAATTGTTTCCATAAGCATCACCTCACTCACTCTGGT----AT-AGATcagtgcttttcaa--acttaacatgcagaaagttctcctagggatcctgtt-aaaatacagattctgattt-agtaggg-tgggatcgggcccaatattctgcatttc-taacaagctcccaggcgatgg----ggatgctgctggtccctccctgtgcactttgagaagcaaATCCTTA-CAGCACCACTG----GCTGATTAGGTAGAAGGGC---------------------------------------GGTTCAGAGA-AGTGGCCCAAT-GGCAGGCTGCCCAAGTCCAGTATTCCTTCTGCCTC--------CCACGCGCATGGCCTGCTCTAGGAAC-ATCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     513065 356 -    863181 CACATTTATTTTTAAATTGGTGCTTAATTTCGAAATTGTTTCCATAAGCATCACCTCACTCACTCTGGT----AT-AGATcagtgcttttcaa--acttaacatgcagaaagttctcctagggatcctgtt-aaaatgcagattctgattt-agtaggg-tgggatcgggcccaatattctgcatttc-taacaagctcccaggcaatgg----ggatgctgctggtccctccctgtgcactttgagaagcaaATCCTTA-CAGCACCACTG----GCTGATTAGGTAGAAGGGC---------------------------------------GGTTCAGA-------GCCCAAT-GACAGGCTGCCCAAGTCCAGTATTCCTTCTGCCTC--------CCACGCGCCTGGCCTGCTCTAGGAAC-ATCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29659957 352 -  71996105 CACATTTATTTTTAAATTGGTGCTTAATTTAGAAATTGTTTCCATAAGCATCAC----CTCACTCTGGT----AT-AGATcagtgcttttcaa--acttaacatgcagaaagttctcctagggatcctgtt-aaaatgcagattctgattt-agtaggg-tgggatggggcccaatattctgcatttc-taacaagctcccaggcgatgg----ggatgcagctggtccctccctctgcactttgagaagcaaATCCTTA-CAGCACCACTG----GCTGATTAGGTAGAAGGGC---------------------------------------GGTTCAGA-------GCCCAAT-GGCAGGCTGCCCCAGTCCAGTATTCCTTCTGCCTC--------CCACGCGCGTGGCCTGCTCTAGGAAC-ATCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     395102 356 -    735854 CACATTTATTTTTAAATTGGTGCTTAATTTCGAAATTGTTTCCATAAGCATCACCTCACTCACTCTGGT----AT-AGATcagtgcttttcaa--acttaacatgcagaaagttctcctagggatcctgtt-aaaatgcagattctgattt-agtaggg-tgggatcgggcccaatattctgcatttc-taacaagctcccaggcaatgg----ggatgctgctggtccctccctgtgcactttgagaagcaaATCCTTA-CAGCACCACTG----GCTGATTAGGTAGAAGGGC---------------------------------------GGTTCAGA-------GCCCAAT-GACAGGCTGCCCAAGTCCAGTATTCCTTCTGCCTC--------CCACGCGCCTGGCCTGCTCTAGGAAC-ATCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     298252 352 -   1829203 CACATATATTTTTAAATTGGTGCTTAATTTAGAAATTGTTTCCATAAGCATCACCTCACTCACTCTGGT---------ATcagtgcttttcaa--acttaatatgcagaaaggtctcctagggatcctgtt-aaaatgcagattctgattt-agtaggg-tgggatgggtcccaatattctgcatttc-taacaagctcccaggcgatgg----ggatgctgctggtccctccctctgcactttgagaagcaaATCCTTA-CAGCACCACTG----GCTGATTAGGTAGAAGGGC---------------------------------------GGTTCAGA-------GCCCAAT-GGCAGGCTGCCCAAGTCCAGTATTCCTTCTGCCTC--------CCACGCGCGTGGCCTGCTCTAAGAAC-ATCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30496631 354 + 171630274 CACATTTATTTTTTAATTGGTGCTTAATTTAGCAATTGTTTCCACAAGCATCAC----CTCACTCTGGT----AT-AGATcagtgcttttcaa--acccgacatgcagaatggtctcctagggatcctgtt-aaaatgcagattctgattt-agtaagg-tgggatgggatccaagattctgcatttc-taacaagctccggggcgatgg----ggttgctgctggcgcctccccctgcactttgagaagcaaATCTTTA-CAGCACCACTT----GCCTATTAGGTAGAAGGAC---------------------------------------TGTTCAGAGA-AGTGGCCCAAT-AGCAGGCTGCCCCAGTC----AGTGCTCCTAACTC--------CCACTCGCCTTGCCTGCTCTAGGAAC-AGCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           303144 344 +    515838 CATATTTG-TTCGTAATTGGTGTTTAATTTAGAAATTGTTTCCACAAGCATCAC----TTCACTCTAGTATAGAT-AGATcagtgcttttcaa--acctgacctgcagaaaggtctcccagggatcctgtt-aaaatgcagattctgattt-agtaagg-tgggatggggtccaagattctgcatttc-tagcaagctccggggcgatgg----ggatgctgctggcccctccccctgcactttgagaagcaaATCCTCA-CAGCACCACTT----GCCGATTAGGTAGGAGGAC---------------------------------------TGTTCCGAGA-AGTGGCCCGAC-AGCAGGCTGCCCCAGCC----AGTGCTCCTAACTC--------CCACTCGCGTTGCCGGCT--------------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     933982 350 -   1771730 CACATTTG-TTTTTAATCGGTGCTTAATTTAGAAATTGTTTCCACAAGCATCAC----CTCACTCTGGT----AT-AGATcagtgcttttcaa--acctgacatgcagaaaggtctcctagggatcctgtt-aaaatgcagattctgattt-agtacgg-tgggatggggttcaagattctgcatttc-taacaagctccggggagatgg----ggatgctgctggcccctccccctgcactttgagaagcaaACCCTTG-CAGCACCACTT----GCCGATTAGGT---AGGAC---------------------------------------TGTTCAGAGA-AGTGGCCCAAG-AGCAGGCTGCCCCAGTC----AGTGCTCCTAACTC--------CCACTCGCGTTGCCTGCTCTAGGAGC-AGCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     113096 355 -    486031 CACATTTATTTTTTAATTGGTGCTTAATTTAGAAATTGTTTCCACAAGCATCAC----CTCACTCTAGT----AT-AGATcagtgcttttcaa--acctgacatgcagaaaggtctcctaggaatcctgtt-aaaatgcagattctgattt-agtaagg-tgggatggggtccaagattctgcatttc-taacaagctccgaggcgatgg----ggatgctgcgggcccctccccctacactttgagaagcaaATCCTTA-CAGCACCACTT----GCCGATTAGGTAGAAGGAC---------------------------------------TGTTCAGAGA-AGTGGCCCAAT-AGCAGGCTGCCCCAGTC----AGTACTCCTAACTG--------CCCCTCGCGTTGCCTGCTCTAGGAAAGAGCTG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           348079 399 +  18854210 AGCACTTA-CTTCAAATtggcccttcatttagaaattgttcttacaagtgtcac----ctcattctgat----ataaaaacaatgcttctcaa--attaaatgtgctgaa---------aaaaatcttgttaaaaacacagattctgattt-agtgggtctgggatggagcgcaacaatttgcctttt-taaccgcctcccaggagacagggatggatgctgctggt-ccacccaccgccctttgagaggcaaatcctta-cagcaccactt----gccagtcaggtagaagagctgtcattgtctgtcctcatggaacagaaggagaaactgaggttctgaga-agCCGGCCAGT-GGCAGGCTGCACGCGGC-AGTGCTCTTTCTGCCCCTACTCACATCACGTG-GTTACCTGCTCTAGGGAC-GTTTT
i otoGar3.GL873550         C 0 I 4
s mm10.chr17               58125517 289 -  94987271 AATATTTACTTTCAAATTGGAGCTTAA--------TCGTTCCCACAAGCACTTG----TCTGTTCTTAT----AT-TGATCCCtacttctcta--acgta--ctgtagaaaatttacccactcacctggtt-aaaatgcaagctcttgtttgggtagcc-tagggcaggggccaagattttgtgtttcttaacaggctcctaggtactg-----tgctgctgct-gttctggccacttcactttaagaaacaaATCCT---CAGACACAGCT----GTCACTCCTGT-----------------------------------------------CCTTCAGAAACAGAAGCCTAGGAAGCAGGCAGCCTGGA------------------------------------------------------------
i mm10.chr17               I 256 C 0
s canFam3.chr35            26363424 297 +  26524999 AGCATTTACTTTGAAGTTTGTACTTAGTTAAGAAACCATTTCCACAAATAGCAG----CTCATTCtgct----tc--------tccgacttaatgacttaacatgcagaa---ccacgtggggatcttgtt-ataacgcagat--tgagtc-agggggc-tgcgaagcggtcagacatcctgcgtttc-caacacattcc--agccaagc----gcctgccgctggcccc-cgagctgccctttgggaagcaag-CCTGG-CAGCACAGCAGCAGCGCCCAATGAACAGTGGGGC------------------------------------------TCCGAGC-----ACCAGGT-G----------------------------TGCCTT--------C----------GCCTGC---AGGCAC-AT---
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e proCoq1.NW_012149775v1     219005 3760 -   1411461 I

a score=1135596.000000
s hg38.chr6_GL000254v2_alt  1515861 83 +   4827813 TGGTTGCCGCCCGCTGTTGATGTCTGCGCGCTCCTCCCTCTAGG---GGTCATCACTCTGGACCCTCAGACCGCCAGCCGGAGCCT
s panTro5.chr6             30384580 83 + 175400573 TGGTTGCCGCCCGCTGTTGATGTCTGCGCGCTCCTCCCTCTAGG---GGTCATCACTCTGGACCCTCAGACCGCCAGCCGGAGCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30618905 83 + 173848474 TGGTTGCCGCCCGCTGTTGATGTCTGCGCGCTCCTCCCTCTAGG---GGTCATCACTCTGGACCCTCAGACCGCCAGCCGGAGCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     326652 83 +   2037526 TGGTTGCCGCCCGCTGTTGATGTCTGCGCGCTCCTCCCTCTAGG---GGTCATCACTCTGGACCCTCAGACCGCCAGCCGGAGCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74993110 83 + 122973662 TGGTTGCCGCCCGCTGTTGATGTCTGCGCTCTCCTCCCTCTAGG---GGTCATCACTCTGGACCCTCAGACCGCCAGCCGGAGCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30871289 83 + 172585720 TGGTTGCTGCCCGCTGTTGATGTCTGCGCTCTCCTCCCTCTAGG---GGTCATCACTCTGGACCCTCAGACCGCCAGCCGGAGCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30160749 83 - 170955103 TGGTTGCTGCCCGCTGTTGATGTCTGCGCTCTCCTCCCTCTAGG---GGTCATCACTCTGGACCCTCAGACCGCCAGCCGGAGCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     409569 83 +   1495729 TGGTTGCTGCCCGCTGTTGATGTCTGCGCTCTCCTCCCTCTAGG---GGTCATCACTCTGGACCCTCAGACCGCCAGCCGGAGCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     513421 83 -    863181 TGGTTGCTGCCCGCTGTTGATGTCTGCGCTCTCCTCCCTCTAGG---GGTCATCACTCTGGACCCTCAGACCGCCAGCCGGAGCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29660309 83 -  71996105 TGGTTGCTGCCCGCTGTTGATGTCTGCGATCTCCTCCCTCCAGG---GGTCATCACTCTGGACCCTCAGACCGCCAGCCGGAGCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     395458 83 -    735854 TGGTTGCTGCCCGCTGTTGATGTCTGCGCTCTCCTCCCTCTAGG---GGTCATCACTCTGGACCCTCAGACCGCCAGCCGGAGCCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     298604 83 -   1829203 TGGTTGCTGCCCGCTGTTGATGTCTGCGCTCTCCTCCCTCTAGG---GGTCATCACTCTGGACCCTCAGACCGCCAGCCGGAGCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30496985 83 + 171630274 TGGCTGCCGCCCGCTGTTGAGGTCTGCACCCTCTTCCCTCTAGG---GGTCATCACTCTGGACCCTCAGACCGCCAGCCGGAGCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           303488 77 +    515838 ------CCACCCGCCGTTGAGGCCTGCGCCCTCCTCCCTCTAGG---GGTCATCACTCTGGACCCTCAGACCGCCAGCCGGAGCCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     934332 83 -   1771730 TGGCTGCCGCCCGCTGTTGAGGTCTGCGCCCTCCTCCCTCTAGG---GGTCATCACTCTGGACCCCCAGACCGCCAGCCGGAGCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     113451 83 -    486031 TGGTTGCCGCCCGCTGTTGAGATCTGCGCCCTCCTCTCTCTAGG---GGTCATCACTTTGGACCCTCAGACCGCCAGCCGAAGCCT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     222765 78 -   1411461 TGGTTGCCGC---CCGCTGTTGTCC--GCTCCCCTCCCTCTGGG---GGTCATCACTCTGGACCCTCAGACCGCCAGCTGGAGCCT
i proCoq1.NW_012149775v1   I 3760 I 216
s otoGar3.GL873550           348482 82 +  18854210 TGGCTGCCTC-AGCTGTTGATGTCCATGCTGTCCTCCCTCTAGA---GGTCATCACTCTGGACCCTCAGACCGCCAGCCAGAGCCT
i otoGar3.GL873550         I 4 C 0
s mm10.chr17               58125806 69 -  94987271 TGGATGCCGCTCCATCCTGAAGCGGG--------------GAAG---AGGTGTCACTCTGGACCCACAGACCACAAAGCCAAGTCC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26363721 71 +  26524999 ----TGCTCCCCTCC-----------CGCTCTCCTCCTCCAGGGGCCGGTCGGTGCTCCGGACCCTCAGGCCGCCAGGACAGGCCT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I

a score=98710.000000
s hg38.chr6_GL000254v2_alt  1515944 8 +   4827813 GGTTCTCT
s panTro5.chr6             30384663 8 + 175400573 GGTTCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30618988 8 + 173848474 GGTTCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     326735 8 +   2037526 GGTTCTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74993193 8 + 122973662 GGTTCTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30871372 8 + 172585720 GGTTCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30160832 8 - 170955103 GGTTCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     409652 8 +   1495729 GGTTCTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     513504 8 -    863181 GGTTCTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29660392 8 -  71996105 GGTTCTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     395541 8 -    735854 GGTTCTTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     298687 8 -   1829203 GGTTCTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30497068 8 + 171630274 GGCCCTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           303565 8 +    515838 GGCGCTCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     934415 8 -   1771730 GGCCCTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     113534 8 -    486031 GGCCCTCT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           348564 8 +  18854210 AGTCCTCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58125875 8 -  94987271 AGTCCTCT
i mm10.chr17               C 0 I 17
s canFam3.chr35            26363792 8 +  26524999 GGGCCTCC
i canFam3.chr35            C 0 I 7
e micMur3.chr6               386557 38559 + 123392446 I
e proCoq1.NW_012149775v1     222843 216 -   1411461 I

a score=1871940.000000
s hg38.chr6_GL000254v2_alt  1515952 150 +   4827813 CGGAAGACAGGAAGTCAGTGAGGTACACCCGGCAGAAGAAGAACCTGCCAGACAGCCCCCTGCGCTTCGACGGCCTCCCGGCGGTTCTGGGCTTCCCGGGCTTCTCCTCCGGGCGCCACCGCTGGCAGGTTGACCTGCAGCTGGGCGACG
s panTro5.chr6             30384671 150 + 175400573 CGGAAGACAGGAAGTCAGTGAGGTACACCCGGCAGAAGAAGAACCTGCCAGACAGCCCCCTGCGCTTCGACGGCCTCCCGGCGGTTCTGGGCTTCCCGGGATTCTCCTCCGGGCGCCACCGCTGGCAGGTTGACGTGCAGCTGGGCGACG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30618996 150 + 173848474 CGGAAGACAGGAAGTCAGTGAGGTACACCCGGCAGAAGAAGAACCTGCCAGACAGCCCCCTGCGCTTCGACGGCCTCCCGGCGGTTCTGGGCTTCCCGGGATTCTCCTCCGGGCGCCACCGCTGGCAGGTTGACGTGCAGCTGGGCGACG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     326743 150 +   2037526 CGGAAGACAGGAAGTCAGTGAGGTACACCCGGCAGAAGAAGAACCTGCCAGACAGCCCCTTGCGCTTCGACGGCCTCCCGGCGGTTCTGGGCTTCCCGGGATTCTCCTCCGGGCGCCACCGCTGGCAGGTTGACCTGCAGCTGGGCGACG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74993201 150 + 122973662 CGGAAGACAGGAAGTCAGTGAGGTACACCCGGCAGAAGAAGAACCTGCCAGACAGCCCCCTGCGCTTCGACGGCCTCCCGGCGGTTCTGGGCTTCCCGGGCTTCTCCTCCGGGCGCCACCGCTGGCAGGTTGACCTGCAGCTGGGCGACG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30871380 150 + 172585720 CGGAAGACAGGAAGTCAGTGAGGTACACCCGGCAGAAGAAGAACCTGCCAGACAGCCCCCTGCGCTTCGACGGCCTCCCGGCGGTGCTGGGCTTCCCGGGTTTCTCCTCGGGGCGCCACCGCTGGCAGGTTGACCTGCAGCTcggcgacg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30160840 150 - 170955103 CGGAAGACAGGAAGTCAGTGAGGTACACCCGGCAGAAGAAGAACCTGCCAGACAGCCCCCTGCGCTTCGACGGCCTCCCGGCGGTGCTGGGCTTCCCGGGTTTCTCCTCGGGGCGCCACCGCTGGCAGGTTGACCTGCAGCTcggcgacg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     409660 150 +   1495729 CGGAAGACAGGAAGTCGGTGAGGTACACCCGGCAGAAGAAGAACCTGCCAGACAGCCCCCTGCGCTTCGACGGCCTCCCGGCGGTGCTGGGCTTCCCGGGTTTCTCCTCGGGGCGCCACCGCTGGCAGGTTGACCTGCAGCTcggcgacg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     513512 150 -    863181 CAGAAGACAGGAAGTCAGTGAGGTACACCCGGCAGAAGAAGAACCTGCCAGACAGCCCCCTGCGCTTCGACGGCCTCCCGGCGGTGCTGGGCTTCCCAGGTTTCTCCTCGGGGCGCCACCGCTGGCAGGTTGACCTGCAGCTcggcgacg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29660400 150 -  71996105 CGGAAGACAGGAAGTCAGTGAGGTACACCCGGCAGAAGAAGAACCTGCCAGACAGCCCCCTGCGCTTCGACGGCCTCCCGGCGGTGCTGGGCTTCCCGGGTTTCTCCTCGGGGCGCCACCGCTGGCAGGTTGACCTGCAGCTCGGCGACG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     395549 150 -    735854 CAGAAGATAGGAAGTCAGTGAGGTACACCCGGCAGAAGAAGAACCTGCCAGACAGCCCCCTGCGCTTCGACGGCCTCCCGGCGGTGCTGGGCTTCCCAGGTTTCTCCTCGGGGCGCCACCGCTGGCAGGTTGACCTGCAGCTcggcgacg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     298695 150 -   1829203 CGGAAGACAGGAAGTCAGTGAGGTACACCCGGCAAAAGAAGAACCTGCCAGACAGCCCCCTGCGCTTCGACGGCCTCCCGGCGGTGCTGGGCTTCCCGGGTTTCTCCTCGGGGCGCCACCACTGGCAGGTGGACCTGCAGCTcggcgacg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30497076 150 + 171630274 CGGAAGACAGGAAGTCAGTGAGATACACCGGGCAGAAGAAGAACCTACGAGACAGCCCCCTGCGCTTCGACGGCCTCCCGGCCGTGCTGGGCTTCCCGGGCTTCTCCTCGGGGTGCCACCGCTGGCAGGTGGACCTGCAGCTGGGCGACG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           303573 150 +    515838 CGGAGGACAGGAAGTCGGTGAGGTACACCGGGCAGAAGAAGAACCCACGAGACAGCCCCCTGCGCTTCGACGGCCTCCCGGCGGTGCTGGGCGTCCCGGGCTTCTCCTCGGGGCGCCACCGCTGGCAGGTGGACCTGCAGCTGggcgacg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     934423 150 -   1771730 CGGAAGACAGGAAGTCAGTGAGGTACACCGGGCAGAAGAAGAAACTACGAGACAGCCCCCTGCGCTTCGACGGCCTCCCGGCGGTGCTGGGCTTCCCGGGCTTCTCCTCGGGGCGCCACCGCTGGCAGGTGGACCTACAGCTGggcgacg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     113542 150 -    486031 CGGAAGACAGGAAGTCAGTGAGGTACACCGGGCAGAAGAAGAACCTACGAGACAGCCCCCTGCGCTTCGACGGCCTCCCGGCGGTGCTGGGCTTCCCGGGCTTCTCCTCGGGGCGCCACCGCTGGCAGGTGGACCTGCAGCTGGGCGACG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           348572 150 +  18854210 CGAAAGACAGGAAGTCGGTGAGGTACACCCGGCAGAGGCGGAACCTGCGCGGCAGCCCCCTGCGCTTCGACGGCCTCCCGGCTGTGCTGGGCTCCCCGGGCTTCTCCTCGGGGAGCCACCGCTGGCAGGTGGAAGTACAGCTGGGCGACG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               36876869 150 +  94987271 CTGAAGACCACCGACGGGCTCGGTTCTCCTACAAATGGCAGAATTCACCAGATACTCCACAACGCTTTGATCGAGTCACCTGTGTTCTGGCCCAATGTGGTTTTACAGGGGGGAGACACACTTGGATGGTGAATGTTGACTTGGCCCATG
i mm10.chr17               n 17 n 17
s canFam3.chr35            26363807 127 +  26524999 CAGAGGACAGGATGTTGGCCAGGTTCACTAGAGACCAGGAGAGGCCGC---ACAGCCCCCTGCATTCTGAGCATGCCCTGGAGGCTTGGGGCTTCCCCGGCTGCCCCTTGGGGCACCACCAGGGAcaggt--------------------
i canFam3.chr35            I 7 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e proCoq1.NW_012149775v1     222843 216 -   1411461 I

a score=2748643.000000
s hg38.chr6_GL000254v2_alt  1516102 229 +   4827813 GCGGCGGCTGCACGGTGGGGGTG--GCCGGGGAGGGGGTGAGGAGGAAGGGAGAGATGGGACTCAGCGCC--GAGGACGGCGTCTGGGCCGTGATCATCTCGCACCAGCAGTGCTGGGCCAGCACCTCCCCGGGCACCGACCTGCC--GCTGAGCGAGA--------TCCCGCGCGGCGTGAGAGTCGCCCTGGACTACGAGGCGGGGCAGGTGACCCTCCACAACGCCCAGACCCAGGAGCC
s panTro5.chr6             30384821 229 + 175400573 GCGGCGGCTGCACGGTGGGGGTG--GCCGGGGAGGGGGTGAGGAGGAAGGGAGAGATGGGACTCAGCGCC--GAGGACGGCGTCTGGGCCGTGATCATCTCGCACCAGCAGTGCTGGGCCAGCACCTCCCCGGGCACCGACCTGCC--GCTGAGCGAGA--------TCCCGCGCGGCGTGAGAGTCGCCCTGGACTACGAGGCGGGGCAGGTGACCCTCCACAACGCCCAGACCCAGGAGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30619146 229 + 173848474 GCGGCGGCTGCACGGTGGGGGTG--GCCGGGGAGGGGGTGAGGAGGAAGGGAGAGATGGGACTCAGCGCC--GAGGACGGCGTCTGGGCCGTGATCATCTCGCACCAGCAGTGCTGGGCCAGCACCTCCCCGGGCACCGACCTGCC--GCTGAGCGAGA--------TCCCGCGCGGCGTGAGAGTCGCCCTGGACTACGAGGCGGGGCAGGTGACCCTCCACAACGCCCAGACCCAGGAGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     326893 229 +   2037526 GCGGCGGCTGCACGGTGGGGGTG--GCCGGGGAGGGGGTGAGGAGGAAGGGAGAGATGGGACTCAGCGCC--GAGGACGGCGTCTGGGCCGTGATCATCTCGCACCAGCAGTGCTGGGCCAGCACCTCCCCGGGCACCGACCTGCC--GCTGAGCGAGA--------TCCCGCGCGGCGTGAGAGTCGCCCTGGACTACGAGGCGGGGCAGGTGACCCTCCACAACGCCCAGACCCAGGAGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74993351 229 + 122973662 GCGGCGGCTGCACGGTGGGGGTG--GCCGGGGAGGGGGTGAGGAGGAAGGGGGAGATGGGCCTCAGCGCC--GAGGACGGCGTCTGGGCCGTGATCATCTCGCACCAGCAGTGCTGGGCCAGCACCTCCCCGGGCACCGACCTGCC--GCTGAGCGAGA--------TCCCGCGCGGCGTGAGCGTCGCCCTGGACTACGAGGCGGGGCGGGTGACCCTCCACAACGCCCAGACCCAGGAGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30871530 229 + 172585720 gcggcggctgcacggtgggggtg--gccggggagggggTGAGGAGGAAGGGGGAGATGGGCCTTAGCGCC--GAGGACGGCGTCTGGGCCGTGATCATCTCGCACCAGCAGTGCTGGGCCAGCACCTCCCCGGGCACCGACCTGCC--GCTGAGCGAGA--------TCCCGCGCTATGTGGGCGTCGCCCTGGACTACGAGGCCGGACAGGTGACCCTCCTCAACGCCCAGACCCAGGAGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30160990 229 - 170955103 gcggcggctgcacggtgggggtg--gccggggagggggTGAGGAGGAAGGGGGAGATGGGCCTTAGCGCC--GAGGACGGCGTCTGGGCCGTGATCATCTCGCACCAGCAGTGCTGGGCCAGCACCTCCCCGGGCACCGACCTGCC--GCTGAGCGAGA--------TCCCGCGCTATGTGGGCGTCGCCCTGGACTACGAGGCCGGACAGGTGACCCTCCTCAACGCCCAGACCCAGGAGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     409810 229 +   1495729 gcggcggctgcacggtgggggtg--gccggggagggggTGAGGAGGAAGGGGGAGATGGGCCTTAGCGCC--GAGGACGGCGTCTGGGCCGTGATCATCTCGCACCAGCAGTGCTGGGCCAGCACCTCCCCGGGCACCGACCTGCC--GCTGAGCGAGA--------TCCCGCGCTATGTGGGCGTCGCCCTGGACTACGAGGCCGGACAGGTGACCCTCCTCAACGCCCAGACCCAGGAGCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     513662 229 -    863181 gcggcggctgcacggtgggggtg--gccggggagggggtgcggaggAAGGGGGAGATGGGCCTTAGCGCC--GAGGACGGCGTCTGGGCCGTGATCATCTCGCACCAGCAGTGCTGGGCCAGCACCTCCCCGGGCACCGACCTTTC--GCTGAGCGAGA--------TCCCGCGCTATGTGGGCGTCGCCCTGGACTACGAGGCCGGACAGGTGACCCTCCTCAACGCCCAGACCCAGGAGCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29660550 229 -  71996105 GCGGCGGCTGCACCGTGGGGGTG--GCCGGGGAGGGGGTGAGGAGGAAGGGGGAGATGGGCCTTAGCGCC--GAGGACGGCGTCTGGGCCGTAATCATCTCGCACCAGCAGTGCTGGGCCAGCACCTCCCCGGGCACCGACCTGCC--GCTGAGCGAGA--------TCCCGCGCTATGTGGGCGTCGCCCTGGACTACGAGGCCGGACGGGTGACCCTCTTCAACGCCCAGACCCAGGAGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     395699 229 -    735854 gcggcggctgcacggtgggggtg--gccggggagggggTGAGGAGGAAGGGGGAGATGGGCCTTAGCGCC--GAGGACGGCGTCTGGGCCGTGATCATCTCGCACCAGCAGTGCTGGGCCAGCACCTCCCCGGGCACCGACCTGCC--GCTGAGCGAGA--------TCCCGCGCTATGTGGGCGTCGCCCTGGACTACGAGGCCGGACAGGTGACCCTCCTCAACGCCCAGACCCAGGAGCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     298845 229 -   1829203 gcggcggctgcacggtgggggtg--gcgggggagggggTGAGGAGGAAGGGGGAGATGGGCCTTAGCGCC--GAGGACGGCGTCTGGGCCGTGATCATCTCGCACCAGCAGTGCTGGGCCAGCACCTCCCCGGGCACCGACCTGCA--GCTGAGCGAGA--------TCCCGCGCTACGTGGGCGTCACCCTGGACTACGAGGCCGGACGCGTGACCCTCCTCAACGCCCAGACCCAGGAGCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30497226 229 + 171630274 GCGGCGGCTGCACGGTGGGGGTG--GCCGCGGAGGGGGTGAGCAGGAAGGGGGAGATGGGCCTCAGCGCC--GAGGACGGCATCTGGGCCGTGATCATCTCGCACCAGCAGTGCTGGGCCAGCACCTCCCCGGGAACCGACCTGCG--GCTCAGCGAGA--------TCCCGCGCGGCGTGGGCGTCACCCTGGACTACGAGGCGGGGCTGGTGACCCTCCTCAACGCCCAAACCAGGGAGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           303723 229 +    515838 gcggcggctgcacggtgggggtg--gccgcggaggcggtgAGCAGGAAGGGGGAGATGGGCCTCCGCGCC--GAGGACGGCGTCTGGGCCGTGATCATCTCGCACCAGCAGTGCTGGGCCAGCACCTCCCCGGGCACCGACCTGCG--GCTCGGCGAGA--------TCCCGCGCGGCGTGGGCGTCGCCCTGGACTACGAGGCCGGGCTGCTGACCCTCCTCAACGCCCAGACCCGGGAGCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     934573 229 -   1771730 gcggcggctgcacggtgggggtg--gccgcggagggggTGAGCAGGAAGGGGGAGATGGGCCTCAGCGCC--GAGGACGGCGTCTGGGCCGTGATCGTCTCGCACCAGCAGTGCTGGGCCAGCACCTCCCCGGGCACCGACCTGCG--GCTCAGCGAGA--------TCCCGCGCGGCGTGGGCGTCGCCCTGGACTACGAGGCGGGGCTGGTGACCCTCCTCAACGCCCAGACCCGGGAGCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     113692 229 -    486031 GCGGAGGCTGCACGGTGGGGGTG--GCCGCTGAGGGGGTGAGCAGGAAGGGGGAGATGGGCCTCAGCGCC--GAGGACGGCGTCTGGGCCGTGATCATCTCGCACCAGCAGTGCTGGGCCAGCACCTCCCCGGGCACCGACCTGCG--GCTCAGCGAGA--------TCCCGCGCGGCGTGGGCGTCGCCCTGGACTACGAGGCGGGGCTAGTGACCCTCCTCAACGCCGAGACCCGGGAGCC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           348722 229 +  18854210 GCGGCGGCTGCGTGGTGGGGGTG--GCTGGGGAGCAGGTGAGGAAGAAAGGAGACATGGGTCTGAGCGCC--AAGGAGGGCGTCTGGGCCGTGATCTTCTCGCACCAGCAGTGCTGGGCCAGCACCTTCCCCGGCACCGACCTGCC--GCAGGGCGACA--------TCCCGCGCGCCGTGGGCGTCGCCCTGGACTATGAGGCTGGGCAGGTGACCCTCCTCGATGCCCAGACCCAGGCACC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58125900 206 -  94987271 GTGGCGGCTGCATCATGAGAATG--GTCCCCTAAGTGTCCAGGGTGAGGGGATGGCAGGACCTGAGCACC--AAGGACATTGTCTGGGCCATAATACTTTTGCTCCAAC------TGGCCAGCGCCC------------ACCTGCCATGCAAAAGGAGACACAGCTGTCCTGCGCAGTGTAGATGTGACC----------AGGTGTGGGAGA-GACCTTGCAAATGTCCCACACCAAGG----
i mm10.chr17               I 17 C 0
s canFam3.chr35            26363934 143 +  26524999 ---gcaggtgca-ggtgcaggtgcagCCAGGGTGGGGGCTGGG------------------CTAGGCGGCTAGGGGGCGGCACCTGAGCTGGGA----CCCACTTCA-CAGGGCCTGAAGGGCCTCGCCCCAG--------CTGCC--TC-------AC--------TCTCGCCCTGCG-----GTGGCCTGGGACTCCG-------------------------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e proCoq1.NW_012149775v1     222843 216 -   1411461 I

a score=1046774.000000
s hg38.chr6_GL000254v2_alt  1516331 75 +   4827813 CATCTTCACCTTCACTGCCTCTTTCTCCGGCAAAGTCTTCCCTTTCTTTGCCGTCTGGAAAAAAGGTTC--CTGCCT
s panTro5.chr6             30385050 75 + 175400573 CATCTTCACCTTCACTGCCTCTTTCTCCGGCAAAGTCTTCCCTTTCTTTGCCGTCTGGAAAAAAGGTTC--CTACCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30619375 75 + 173848474 CATCTTCACCTTCACTGCCTCTTTCTCCGGCAAAGTCTTCCCTTTCTTTGCCGTCTGGAAAAAAGGTTC--CTACCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     327122 75 +   2037526 CATCTTCACCTTCACTGCCTCTTTCTCCGGCAAAGTCTTCCCTTTCTTTGCCGTCTGGAAAAAAGGTTC--CTACCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74993580 75 + 122973662 CATCTTCACCTTCACTGCCTCTTTCTCCGGCAAAGTCTTCCCTTTCTTTGCCGTCTGGAAGAAAGGTTC--CTCCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30871759 75 + 172585720 CATCTTCACCTTCGCTGCCTCTTTCTCCGGCAAAGTCTTTCCTTTCTTTGCCGTCTGGAAAAAGGGTTC--CTGCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30161219 75 - 170955103 CATCTTCACCTTCGCTGCCTCTTTCTCCGGCAAAGTCTTTCCTTTCTTTGCCGTCTGGAAAAAGGGTTC--CTGCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     410039 75 +   1495729 CATCTTCACCTTCGCTGCCTCTTTCTCCGGCAAAGTCTTTCCTTTCTTTGCCGTCTGGAAAAAGGGTTC--CTGCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     513891 75 -    863181 CATCTTCACCTTCGCTGCCTCTTTCTCCGGCAAAGTCTTTCCTTTCTTTGCCGTCTGGAAAAAGGGTTC--CTGCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29660779 75 -  71996105 CATCTTCACCTTCGCTGCCTCTTTCTCCGGCAAAGTCTTTCCTTTCTTTGCCGTCTGGAAAAAGGGTTC--CTGCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     395928 75 -    735854 CATCTTCACCTTCGCTGCCTCTTTCTCCGGCAAAGTCTTTCCTTTCTTTGCCGTCTGGAAAAAGGGTTC--CTGCCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     299074 75 -   1829203 CATCTTCACCTTCGCTGCCTCTTTCTCCGGCAAAGTCTTTCCTTTCTTTGCCGTCTGGAAAAAGGGTTC--CTGCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30497455 75 + 171630274 CATCTTCACCTTCACTGCCTCTTTCTCCGGCAAAGTCTTCCCTTTCTTTGCAGTCTGGAAAAAAGGTTC--CTACCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           303952 75 +    515838 CATCTTCACCTTCACCGCCTCTTTCTCCGGCAAAGTCTTCCCTTTCTTTGCCGTCTGGAAGAAAGGTTC--CTGCCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     934802 75 -   1771730 CATCTTCACCTTCACTGCCTCTTTCTCCGGCAAAGTCTTCCCTTTCTTTGCCGTCTGGAAAAAAGGTTC--CTGCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     113921 75 -    486031 CATCTTCACCTTCACTGCCTCTTTCTCTGGCAAAGTCTTCCCTTTTTTTGCTGTCTGGAAAAAAGGTTC--CTGCCT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     223059 75 -   1411461 CATCCTCACCTCCACGGCTTCTTTCTCTGGCAAAGTCTTCCGTTTCTTTGCCGTCTGGAGAAAAGGTTC--CTGCCT
i proCoq1.NW_012149775v1   I 216 I 383
s otoGar3.GL873550           348951 75 +  18854210 TATCTTCACTTTCACCGCCTCTTTCTCAGGCAAGGTCTTCCCTTTCTTTGGCGTCTGGAAAAAAGGTTC--CTGCCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58126106 57 -  94987271 ---CTTCA--GTCACCATCTTTTTCT------AACCCTATC---------CCACCTGGAAAGTAAGTTCCTCTGCCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26364077 62 +  26524999 --------CTGTTGCCGCTCCCTTCCCCG---CAGTCT-CCCCTTCTTTGAGGTCTGGGAAGCAGATTC--CTGCC-
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I

a score=2686299.000000
s hg38.chr6_GL000254v2_alt  1516406 306 +   4827813 TACGCTGAAAGGCTGAAGTGGGGCGCGCGAAGGGCGGCGAAGCGGAGACG------------------GCGGCTCTC-CGGGATCCAGCTCCGCCCCTGGCCAGTGTGCGGCCC--GGG-GGCTCCCTGT-------------------GCCCGCGTGAGGCGAGAGAACAGGGGA-CTTGAGTCTCGAACAG--CGGT--TGTTTTTACTTTATTTATCTTA--GGCCCTCAGCTCCCTGACGTCCTGAGCCTCCCTGTGACGCTCTGGCCTTCTCTGCACCTCAGAGTGCAGAACCA-CAGACGGCTTC---GGCTGTGCCTAGGGCAACAGCCAACCTAGGAG-CCAGCGGGCTTT
s panTro5.chr6             30385125 324 + 175400573 TACGCTGAAAGGCTGAAGTGGGGCGCGCGAAGGGCGGCGAAGCGGAGACGGCGGCTCTCCGGGATCCAGCGGCTCTC-CGGGATCCAGCTCCGCCCCTGGCCAGTGTGCAGCCC--GGG-GGCTCCCTGT-------------------GCCCGCGTGAGGTGAGAGAACAGGGGA-CTTGAGTCTCGAACAG--CGGT--TGTTTTTACTTTATTTATCTTA--GGCCCTCAGCTCCCTGACGTCCTGAGCCTCCCTGTGACGCTCCGGCCTTCTCTGCACCTCAGAGTGCAGAACCA-CAGGCGGCTTC---GGCTGTGCCTAGGGCAACAGCCAACCTAGGAG-CCAGCGGGCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30619450 327 + 173848474 TACGCTGAAAGGCTGAAGTGGGGCGCGCGAAGGGCGGCGAAGCGGAGACGGCGGCTCTCCGGGATCCAGCGGCTCTC-CGGGATCCAGCTCCGCCCCTGGCCAGTGTGCAGCCC--GGG-GGCTCCCTGT-------------------GCCCGCGTGAGGTGAGAGAACAGGGGA-CTTGAGTCTCGAACAG--CGGT--TGTTTTTACTTTATTTATCTTA--GGCCCTCAGCTCCCTGACGTCCTGAGCCTCCCTGTGACGCTCCGGCCTTCTCTGCACCTCAGAGTGCAGAACCA-CAGGCGGTGGCACAGGCTGTGCCTAGGGCAACAGCCAACCTAGGAG-CCAGCGGGCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     327197 305 +   2037526 TACGCTGAAAGGCTGAAGTGGGGCGCGCGAAGGGCGGCGAAGCGGAGACG------------------GCGGCTCTC-CGGGATCCAGCTCCGCCCCTGGCCAATGTGCAGCCC--GGG-GGCTCCCTGT-------------------GCCCGCGTGAGGCGAGAGAA-AGGGGA-CTTGAGTCTCGAACAG--CGGT--TGTTTTTACTTTATTTATCTTA--GGCCCTCAGCTCCCTGACGTCCTGAGCCTCCCTGTGACGCTCCGGCCTTCTCTGCACCTCAGAGTGCAGAACCA-CAGGCGGCTTC---GGCTGTGCCTAGGGCAACAGCCAACCTAGGAG-CCAGCTGGCTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74993655 306 + 122973662 TACGCTGAAAGGCTGAAGTGGGGCGCGCGAACGGCGGCGAAGCGGAGACG------------------GCGGCTCCC-TGGGATCCAGCTCCGCCCCTGGCCAGCGCGCGGCCC--GGG-GGCTCCCTGT-------------------GCCCGCGTGAGGCGAGAGGGCAGGGGA-CTTGAGTCTCGAACAG--CGGT--CGTTTCTACTTTATCTATCTTA--GGCCCTCAGCTCCCTGACGTCCTGAGCCTCCCTGTGACGCTCCGGCCTTCTCTGCACCTCCGAGTGCAGAACCA-CAGGCGGCTTC---GGCTGTGCCTAGGGCAACAGCCAACCTAGGAG-CCAGCGGGCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30871834 288 + 172585720 TACCCTGAAAGGCTGAAGTGGGGCGCGCGAAGGGCGGCGAAGCGGAGACA------------------GCGGCTCCC-TGGGATCCAGCTCCGCCCCTGGCCAGCGCGCG---------------------------------------GCCCGCGTGAGGCGAAAGGACAGGGG--CTTGAGTCTCGAACAG--CGGT--TGTTTATACTTTATTTATCTTA--GGCCCTCAGCTCCCTGACTTCCTGAGCCTCTCTGTGACGCTCCGGCCTTCTCTGCACCTCCGAGTGCAGAACCa-caggcgggctc---agctgtgcctagggcaacagccaacctaggag-ccagcgggcttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30161294 288 - 170955103 TACCCTGAAAGGCTGAAGTGGGGCGCGCGAAGGGCGGCGAAGCGGAGACA------------------GCGGCTCCC-TGGGATCCAGCTCCGCCCCTGGCCAGCGCGCG---------------------------------------GCCCGCGTGAGGCGAAAGGACAGGGG--CTTGAGTCTCGAACAG--CGGT--TGTTTATACTTTATTTATCTTA--GGCCCTCAGCTCCCTGACGTCCTGAGCCTCTCTGTGACGCTCCGGCCTTCTCTGCACCTCCGAGTGCAGAACCa-caggcgggctc---agctgtgcctagggcaacagccaacctaggag-ccagcgggcttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     410114 289 +   1495729 TACCCTGAAAGGCTGAAGTGGGGCGCGCGAAGGGCGGCGAAGCGGAGACA------------------GCGGCTCCC-TGGGATCCAGCTCCGCCCCTGGCCAGCGCGCG---------------------------------------GCCCGCGTGAGGCGAAAGGACAGGGGA-CTTGAGTCTCGAACAG--CGGT--TGTTTATACTTTATTTATCTTA--GGCCCTCAGCTCCCTGACGTCCTGAGCCTCTCTGTGACGCTCCGGCCTTCTCTGCACCTCCGAGTGCAGAACCa-caggcgggctc---agctgtgcctagggcaacagccaacctaggag-ccagcgggcttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     513966 288 -    863181 TACCCTGAAAGGCTGAAGTGGGGCGCGCGAAGGGCGGCGAAGCGGAGACA------------------GCGGCTCCC-TGGGATCCAGCTCCGCCCTTGGCCAGCGCGCG---------------------------------------GCCCGCATGAGGCGAAAGGACAGGGG--CTTGAGTCTCGAACAG--CGGT--TGTTTATACTTTATTTATCTTA--GGCCCTCAGCTCCCTGACGTCCTGAGCCTCTCTGTGACGCTCCGGCCTTCTCTGCACCTCCGAGTGCAGAACCa-caggcgggctc---agctgtgcctggggcaacagccaacctaggag-ccagcgggcttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29660854 289 -  71996105 TACCCTGAAAGGCTGAAGTGGGGCGCGCGAAGGGCGGCGAAGCGGAGACA------------------GCGGCTCCC-TGGGATCCAGCTCCGCCCCTGGCCAGCGCGCG---------------------------------------GCCCGCGTGAGGCGAAAGGACAGGGGA-CTTGAGTCTCGAACAG--CGGT--TGTTTATACTTTATTTATCTTA--GGCCCTCAGCTCCCTGACGTCCTGAGCCTCTCTGTGACGCTCCGGCCTTCTCCGCACCTCCGAGCGCAGAACCa-caggcgggctc---agctgtgcctagggcaacagccaacctaggag-ccagcgggcttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     396003 288 -    735854 TACCCTGAAAGGCTGAAGTGGGGCGCGCGAAGGGCGGCGAAGCGGAGACA------------------GCGGCTCCC-TGGGATCCAGCTCCGCCCTTGGCCAGCGCGCG---------------------------------------GCCCGCATGAGGCGAAAGGACACGGG--CTTGAGTCTCGAACAG--CGGT--TGTTTATACTTTATTTATCTTA--GGCCCTCAGCTCCCTGACGTCCTGAGCCTCTCTGTGACGCTCCGGCCTTCTCTGCACCTCCGAGTGCAGAACCa-caggcgggctc---agctgtgcctagggcaacagccaacctaggag-ccagcgggcttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     299149 289 -   1829203 TACCCTGAAAGGCTGAAGTGGGACGCGCGAAGGGCGGCGAAGCGGAGACA------------------GCGGCTCCC-TGGGATCCAGCTCCGCCCCTGGCCAGCGCGCG---------------------------------------ACCCGCGTGAGGCGAAAGGACAGGGGA-CTTGAGTCTCGAACAG--CGGT--TGTTTATACTTTATTTATCTTA--GGCCCTCAGCTCCCTGATGTCCTGAGCCTCACTGTGACGCTCCGGCCTTCTCTGCACCTCCGAGTGCAGAACCA-CGGGCGGGTTC---AGCTGTGCCTAGGGCAACAGCCAACCTAGGAG-CTAGCGGGCTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30497530 292 + 171630274 TACCCTGAAAGGCTGAAGTGGGGCGCGCGAAAGGCGGTGAAGCGGAGACC------------------GTGGCGCCC-TGGGATTCAGCTCAGCCCCTGGCCAGCTCGCGGCCC--AGGCGGCCCCCTGT-------------------GCCCGCGTGAGGCGAGAG-------GA--CTAAGTCTCGAACAG--CGGT--TGTTTTTACTTTATTTATCTTA--GGCCCTCAGCTCCCTGACGTCCTGAACCT-CCTGTGA-CTTCCGGCCTTCTCTGCACCTCCCAGTGAAGAACCA-CAGAGGGGCTC---AGCT-----TAGGGCAACAGCCAACCTAGGAG-CCCGAGGGCTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           304027 298 +    515838 TACCCTGAGAGGCTGAAGTGGGGCGCGCGAAAGGCGGTGAAACGGGGACC------------------GTGGCGCCC-TGGGATCCAGCTCAGCCCCTGGCCAGCTCGCGGCCC--TGGCGGCCCCCTGT-------------------GCCCGCGTGAGGCGAGAGGACAGGAGA--CTAAGTCTGGAACAG--CAGC--TCTTTTTAC----TTTATCTTA--GGCCCTCAACTCCCTGACGTCCTGAACCTCCCCGTGACCCTCCGGCCTTCTTTGCACCTCGCAGTGCAGAACCA-CAGGGGGGCTC---GGCT-----TAGGGCAACAGCCAACCTAGGAGCCCCTCGGGCTTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     934877 301 -   1771730 TACCCTGAACGGCTGAAGTGGGGCGCGCGAAAGGCAGTGAAGCGGAGACC------------------GTGGCGCCC-TGGGATCCTGCTCAGCCCCTGGCCAGCTCGCGGCCC--GGGCGGACCCCTGT-------------------GCCCGCGTGAGGCGAGAGGATAGGGGA-CCTAAGTCTGGAACAG--CCGT--TGTTTTTACTTTATTTATCTTA--GGCCCTCAGCTCCCTGACGTCCTGAACCTCCCCGTGATGCTCCGGCCTTCTCTGCACCTTCCAGTGCAGAACCA-CAG-GGGGCTC---GGCT-----TAGGGCAGCAGCCAACCTAGGAA-CCCGAGGGCTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     113996 293 -    486031 TACTCTGAAAGGCTGAAGTGCGGCGCGCGAAAGGCGGTGAAGTGGAGACC------------------GTGGCGCCC-TGGGATCCAGCTCAGCCCCTGGCCAGCTCGCGGCCC--GGGCGGCCCCCTGT-------------------GCCCGCGTGAGGCGAGAG-------GA--CTAAGTCTCGAACAG--CGGT--TGTTTTTACTTTATTTATCTTA--GGCCCTCAGCTACCTGACGTCCTGAACCT-CCCGTGACGCTCCGGCCTTGTCTGCACCTCCCAGTGAAGAACCA-CAGCGGGGCTC---AGCT-----TAGGGCAACAGCCAACCTAGGAG-CCCGAGGGCTTT
i aotNan1.NW_018496901v1   C 0 I 3532
s otoGar3.GL873550           349026 313 +  18854210 GACTTTGAAAAGCTGAGGTAG-------------------AGTGGAGACC------------------CGAGTGTCC-TGAGACCCAGCTCCTCCCCTCGCCCTCAGAAAGTCCTTGGGCAACTCCTGATGGAGTGAGGCTGGAGTGAGGCCAGAGTGAGGCGGGAGGGCAGGTGATCTCAGACCTGGAACAGGACAGTGATGTGTGTGC-TTATGTATCTTAACGCCTTTCAGCTCTCTAACGCCCCAGACCTGACCTTGACGC-CCGGCCTTCTCTGCA-TGGGAAGAGGAGGACCA-GAGGCAGTGGG---GGTTGTGCCTTGGACATCAGCAAACCTGGGAG-TCAGTGGGCTTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58126163 210 -  94987271 GCCTTTGAAAGACTAAGGTGGAGCCAGGGAAATGCG-----GCAGACACA------------------CCAGCACCCTTGGAACCCAGCTCTGTCCCTAGC------------------------------------------------ATTCAAATGGG---------------------AATCTTGTGTAG--CAAG--TCCTTTCAC--------TCCTG------------TTCCTG-------------------GACACGGTGATCT---------CTCTGAATGGAGAGCCAGCAGACAGGAA----GGCATTGTCCTAGACACCAGCAAAGCTATGAG-TCAATGGGATTT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26364139 118 +  26524999 -CACCTGAGGGGCAAAAGGGGTATGTGCAAGGGGCGCTACAGCAGAGAGC----------------------------T----------------------------------------------------------------------GCC-------------------------------------------CAGC--TG--------------------------------------------------------------------------------------------ACCA-CAGGAGACCCC---TGGACTGCCCAGAACACAGGCAAGACCCAGAG-CCAGCACGTATT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e proCoq1.NW_012149775v1     223134 383 -   1411461 I

a score=200493.000000
s hg38.chr6_GL000254v2_alt  1516712 31 +   4827813 CGGGG--AAAAAAAAG-AAAAAGACA------TCTAAAAT
s panTro5.chr6             30385449 31 + 175400573 CGGGG--AAAAAAAAG-AAAAAGACA------TCTAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30619777 30 + 173848474 CGGGG---AAAAAAAG-AAAAAGACA------TCTAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     327502 31 +   2037526 CGGGG--AAAAAAAAG-AAAAAGACA------TCTAAAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74993961 33 + 122973662 CGGGGGGAAAAAAAAG-AAAAAGACA------TCTAAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30872122 31 + 172585720 cgggg--aaaaagcag-aaaaagaga------tctaaaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30161582 31 - 170955103 cgggg--aaaaaacag-aaaaagaga------tctaaaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     410403 31 +   1495729 cgagg--aaaaaacag-aaaaagaga------tctaaaat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     514254 31 -    863181 cgggg--aaaaaacag-aaaaagaga------tctaaaat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29661143 31 -  71996105 cgggg--aaaaaacag-aaaaagaga------tctaaaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     396291 31 -    735854 cgggg--aaaaaacag-aaaaagaga------tctaaaat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     299438 31 -   1829203 CGGGG--AAAAAACAG-AGAAAGAGA------TCTAAAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30497822 29 + 171630274 -GGGG--TGCGGAGAG--AAAAAACA------CCTAAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           304325 30 +    515838 -GGGG--TGGGGGGAG-AAAaaaaaa------tctaaaat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     935178 31 -   1771730 -GGGG--TGCGGGGAGAAAAAAAAAA------CCTAAAAT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           349339 24 +  18854210 -GGGG--AGGGGGCTG-GA------A------TCTAAAAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58126373 29 -  94987271 -GGAA--GGGAAGCAA-ACAAAAAGC------TGTAAAA-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26364257 32 +  26524999 ------TGAAAAACAG-AACAAAACAGCACTGCCAGAAA-
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e proCoq1.NW_012149775v1     223134 383 -   1411461 I
e aotNan1.NW_018496901v1     114289 3532 -    486031 I

a score=1756779.000000
s hg38.chr6_GL000254v2_alt  1516743 165 +   4827813 AAAATGTTTAAACTGTTtc-aaaataattatcttgggaaa-aatcagggttttgctggacttgcactaatttgtacagttaacttcgtactttgacacacacctgaagatgcctc---------------cacctttgtagggcttagggcctttTTAT-CAGCCCTGGGTGGACCCCAGGGC
s panTro5.chr6             30385480 164 + 175400573 AAAATGTTTAAACGGGTtc-aaaataattatcttggg-aa-aatcagggttttgctggacttgcactaatttatacagttaacttcgtactttgacacacacctgaagatgcctc---------------cacctttgtagggcttagggcctttTCAT-CAGCCCTGGGTGGACCCCAGGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30619807 164 + 173848474 AAAATGTTTAAACGGGTtc-aaaataattatcttggg-aa-aatcagggttttgctggacttgcactaatttatacagttaacttcgtactttgacacacacctgaagatgcctc---------------cacctttgtagggcttagggcctttTCAT-CAGCCCTGGGTGGACCCCAGGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     327533 164 +   2037526 AAAATGTTTAAACTGTTtc-aaaataattatcttggg-aa-aatcagggttttgctgggcttgcactaatttatacagttaacttcgtactttgacacacacctgaagatgcctc---------------cacctttgtagggcttagggcctttTCAT-CAGCCCTGGGTGGACCCCAGGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74993994 165 + 122973662 AAAATGTTTAAACTGTTtc-aaaataatcatcgtgggaaa-aaccagggtttggctggacttgcactaatttatacagttaacttcgtactttgacacacacctgaaggtgcctc---------------cgcctttgtagggcttagggcctctTCAT-CAGCCCTGGGTGGACCCCAGGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30872153 164 + 172585720 aaaatgtttaaactgtttc-aaaataatcatcgtggg-aa-atccagggtgttgctggacttgcactaatttatacagttcacttcgtactttgacacacacctgaagatgcctc---------------cacctttgcacggcttagggcctctTCAT-CAGCTCTGGGTGGACCCCAGGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30161613 164 - 170955103 aaaatgtttaaactgtttc-aaaataatcatcgtggg-aa-atccagggtgttgctggacttgcactaatttatacagttcacttcgtactttgacacacacctgaagatgcctc---------------cacctttgcacggcttagggcctctTCAT-CAGCTCTGGGTGGACCCCAGGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     410434 163 +   1495729 aaaatgtttaaactgtttc-aaaataatcatcgtgga-aa-atccagggtgttgctggacttgcactaatttatacagttcacttcgtactttgacacacacctgaagatgcctc---------------cacctttgcacggctta-ggcctctTCAT-CAGCTCTGGGTGGACCCCAGGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     514285 164 -    863181 aaaatgtttaaactgtttc-aaaataatcatcgtggg-aa-atccagggtgttggtggacttgcactaatttatacagttcacttcgtactttgacacacacctgaagatgcctc---------------cacctttgtacggcttagggcctctTCAT-CAGCTCTGGGTGGACCCCAGGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29661174 164 -  71996105 aaaatgtttaaactgtttc-aaagtaatcatcgtggg-aa-atccagggtgttgctggacctgcactaatttatacagttaacttcgtactttgacacacacctgaagatgcctc---------------cacctttgtaaggcttagggcctctTCAT-CAGCTCTGGGTGGACCCCAGGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     396322 164 -    735854 aaaatgtttaaactgtttc-aaaataatcatcgtggg-aa-atccagggtgttgctggacttgcactaatttatacagttaacttcgtactttgacacacacctgaagatgcctc---------------cacctttgtacggcttagggcctctTCAT-CAGCTCTGGGTGGACCCCAGGGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     299469 164 -   1829203 AAAATGTTTAAACTGTTtc-aaaataatcatcgtggg-aa-atccagggttttgctggacttgcactaagttatacagttaacttcgtactttgacacacacctgaagatgcctc---------------cacctttgtacggcttagggcctctTCAT-CAGCTCTGGGTGGACCCCAGAGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30497851 165 + 171630274 AAAATGTTTATGCTGCTGC-AAAATAATCATCGTAGG-AATAACCAGGGTTTTGTTGGACTTGCATTAATTTATACCGTTAACTTCGTACTTTGACACACACCTGAAGATCCCTC---------------CACCTTTGTAGGGCTTAGGGCCTCTTCAT-CAGCCCTGGGTGGACCCCAGGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           304355 165 +    515838 aaaatgtttaaactgcttc-aaaataatcatcgtggg-aataaccagggttttgttggacttgcattaatttatacagttaacttcgtactttgacacacacgtgaagatccctc---------------cacctttgtaggacttagggcctctTCAT-CGGGCCTGGGGTCCCCCCAGGGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     935209 165 -   1771730 AAAATGTTTAAACTgcttc-aaaataatcatcgtggg-aataaccagggttttgttgcacttgcattaatttatacagttaacttcgtactttgacacacacctgaagatccctc---------------cgcctttgtagggcttagggcctttTCAG-CAGCCCTGGGTGGACCCCAGGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     117821 165 -    486031 AAAATGTTTAAACTgcttc-aaaataatcatcgtggg-aataaccagggttttgttggacttgcattaatttatacagttaacttcgtactttgacatacacctgaagatctctc---------------cacctttgtagggcttagggcctctTCAT-CAGCCCTGGGTGGACCCCAGGGC
i aotNan1.NW_018496901v1   I 3532 C 0
s otoGar3.GL873550           349363 148 +  18854210 AAAATCTTTaaa--gctta-aaaatattcatcatagg-aaaaaccaggacctcattgggcttccACAA-----TAAAATCGACTTTTTAC--------ACACCAGGAGACTCCTTTTACACACCAGGAGACTCCTGTGCAGGGTTTAGGGCCTCTTCAT-CAGCCC-----------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58126402 121 -  94987271 --------------GCTTC-AAAATGACCACTGTAGG-GT-AACCAGGAACCTGT--GACTTGTACTAATTTATG------ACTT-----TTGGACACGAAGCTGGAGATGCTAC-------------------------------AGGGCTTCATCAA-CAACTCTGGGTGGACCCTAAAGC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26364289 159 +  26524999 --AACTTCTACA--GCTTCAAAAATAGTTATCCTGGG-GAAGAAGAGGACTTGACTGGGCCCGCACTGATTCCGAATGGACCGCTGGTGTGCTGACATGCGCCTGGAGATGCTTC---------------C-TCTTGATGGTGCCT---GCCTCTCCCTCCAGCCCTTTCTGACATGTGGGGC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e proCoq1.NW_012149775v1     223134 383 -   1411461 I

a score=1211493.000000
s hg38.chr6_GL000254v2_alt  1516908 97 +   4827813 CCCTTCCTTTCCCTTCCCTTCTGGTCATTTCTCTGGACTTGTAGAGAATGTCCTAAGAAA--GTGTG--ACTCAC-AGACCTCTGGATTCCATGTGTCCAAT
s panTro5.chr6             30385644 97 + 175400573 CACTTCCTTTCCCTTCCCTTCTGGTCATTTCTCTGGACTTGTAGAGAATGTCCTAAGAAA--GTGTG--ACTCAC-AGACCTCTGGATTCCATGTGTCCAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30619971 97 + 173848474 CCCTTCCTTTCCCTTCCCTTCTGGTCATTTCTCTGGACTTGTAGAGAATGTCCTAAGAAA--GTGTG--ACTCAC-AGACCTCTGGATTCCATGTGTCCAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     327697 97 +   2037526 CCCTTCCTTTCCCCTCCCTTCTGGCCATTTCTCTGGACTTGTAGAGAATGTCCTAAGAAA--GTGTG--ACTCAC-AGACCTCTGGATTCCATGTGTCCAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74994159 97 + 122973662 CCCTTCCGTTCCCTTCCCTTCTGGTCATTTCTCTAGACTTGTAGAGAATGTCCTAAGAAA--GTGTG--ACTCAC-AGACCTCTGGATTCCATGTGTCCAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30872317 97 + 172585720 CCCTTCTTTTCCTTCCCCTTCTGGTCATTTCTCTAGACTTGTAGAGAGTGCCCTAAGAAA--GTGTG--ACTCAC-AGACCTCTGGATTCCATATGCCCAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30161777 97 - 170955103 CCCTTCCTTTCCTTCCCCTTCTGGTCATTTCTCTAGACTGGTAGAGAGTGTCCTAAGAAA--GTGTG--ACTCAC-AGACCTCTGGATTCCATGTGCCCAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     410597 97 +   1495729 CCCTTCCTTTCCTTCCCCTTCTGGTCATTTCTCTAGACTTGTAGAGAGTGCCCTAAGAAA--GTGTG--ACTCAC-AGACCTCTGGATTCCATGTGTCCAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     514449 97 -    863181 CCCTTCCTTTCCTTCCCCTTCTGGTCATTTCTCTAGACTTGTAGAGAGTGTCCTAAGAAA--GTGTG--ACTCAC-AGACCTCTGGATTCCATATGCCCAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29661338 97 -  71996105 CCCTTCCTTTCCTTCCCTTTCTGGTCATTTCTCTAGACTTGTAGAGAGTGTCCTAAGAAA--GTGTG--ACTCAC-AGACCTCTGGATTCCATATGTCCAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     396486 97 -    735854 CCCTTCCTTTCCTTCCCCTTCTGGTCATTTCTCTAGACTTGTAGAGAGTGTCCTAAGAAA--GTGTG--ACTCAC-AGACCTCTGGATTCCATATGCCCAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     299633 97 -   1829203 CCCTTCCTTTCCTTCCCCTTCTGGTCATTTCTCTAGACTTGTAGAGAGTGCCCTAAGAAA--GTGTG--ACTCAC-AGACCTCTGGATTCCATATGCCCAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30498016 93 + 171630274 CCCTTCCTTTCCCTTCCCTTCTGGTCATTTCTCTAGACTTGCAGAGTATGTCCT----AA--GTGTG--ACTCAC-AGACCTCTGCATTCCATGTGTCTAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           304520 97 +    515838 CCCTTCCTTTCCCTTCCCTTCTGGTCATTTCTCTAGACTTGCAGAGAATGTCCTAAGAAA--GTGTG--ACTCAC-AGGCCTCTGCGTTCCATGTGTCTAAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     935374 97 -   1771730 CCCTTCCTTTCCCATCCCTACTGGTCCTTTCTCTAGACTGGCAGAGAATGTCCTAAGAAA--GTGTG--ACTCAC-AGACCTCTGCATTCCATGTGTCTAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     117986 97 -    486031 CCCTTCCTTTCCCTTCCCTTCTGGTCATTTCTCTAGACTTGCAGAGTAAGTCCTAAGAAA--GTGTG--ACTCAC-AGACCTCTGCATTCCATGTGTCTAAT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     223517 99 -   1411461 CCCTTCCTTTCCGCCCCCTTCACGTCGTTTCTGTAGACTTGTAGAGATTGTCCTAGGAAAGTGTGTG--ACCCAC-AGACCTCTGCATCTCATGGGTCCAAT
i proCoq1.NW_012149775v1   I 383 C 0
s otoGar3.GL873550           349511 89 +  18854210 ---TTTTTTTCTGC-----TCAGGTCATTTCTCTAGAGTTGTAGAGAATGTCCTAATAAA--CTGTG--ACCCGC-AGACCTCTGCATTTCATGTGTCTAAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58126523 82 -  94987271 ---------------CCCTTCAGCTCATTTATCTACGTTCTGAGAGGATGTTTTAATAAAATATGTA--ACCTAA-GGGCCTTTGTGTTT--TGTGTCTAAT
i mm10.chr17               C 0 I 1382
s canFam3.chr35            26364448 71 +  26524999 ----------CTGTTTCCTTC-----------------TTATAGAGAAT--CCTAATAAA--GTGGGGAACCCGCTGGACTTCCGCGGGTCTTGTGTCTAGT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I

a score=2075582.000000
s hg38.chr6_GL000254v2_alt  1517005 191 +   4827813 TAGCGCTGATGGGACTGGA-GAAAGGCTTAAATCCAATGGGATCTGCCTGTGTTGGCAATTTAGGGCCGAGATGGCTCGAGG---GAGTAGATGCAGAGAGGAAGGGTGATGATCCCTCTGTGACCAAGACACAATCCTGTCCCTTCTTTTAGTCAGGATATCCCTGATGACAGACAGTGGGACAATCACCAGGC
s panTro5.chr6             30385741 191 + 175400573 TAGCGCTGATGGGACTGGA-GAAAGGCTTAAATCCAATGGAATCTGCCTGTGTCGGCAATTTAGGGCCGAGATGGCTCGAGG---GAGTAGATGCAGAGAGGAAGGGTGATGATCCCTCTGTGACCAAGGCACAATCCTGTCCCTTCTTTTAGTCAGGATACCCCTGATGACAGACAGTGGGACAATCACCAGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30620068 191 + 173848474 TAGCGCTGATGGGACTGGA-GAAAGGCTTAAATCCAATGGAATCTGCCTGTGTCGGCAATTTAGGGCCGAGATGGCTCGAGG---GAGTAGATGCAGAGAGGAAGGGTGATGATCCCTCTGTGACCAAGGCACAATCCTGTCCCTTCTTTTAGTCAGGATACCCCTGATGACAGACAGTGGGACAATCACCAGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     327794 191 +   2037526 TAGCGCTGATGGGGCTGGA-GAAAGGCTTAAATCCAATGGAATCTGCCTGTGTTGGCAATTTAGGGCCGAGATGGCTCGAGG---GAGTAGATGCAGAGAGGAAGGGTGATGATCCCTCTGTGACCAAGGCACAATCCTGTCCCTTCTTTTAGTCAGGATACCCCTGATGACAGACAGTGGGACAATCACCAGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74994256 192 + 122973662 TAGCGCTGATGGGACTGGAGGAAAGGCTTAAATCCAATGGAATCTGCCTGTGTTGGCAATTTAGGGCCGAGATGGCTCGAGG---GAGTAGATGCAGAGAGGAAGGGTGCTGATCCGTCCGTGACCAAGACACAGTCCTGTCCCTTCTTTTAGTCAGGACACCCCTGATGACAGACAGTGGGACAATCACCAGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30872414 192 + 172585720 TAGTGCTGATGGGACTGAAGGAAAGGCTTAAATCCAATGGAAGCTGCCTGTGTTGGCAATTTAGGGCGGAGATGGCTGGAGG---GAGTAGAAGCAGAGAGGAAGGGTGATGATCCCTCTGTGACCAAGACACAATCCTGTCCCTTCTTTTAGTCAGGACACCCCTGATGACAGACTATGGGACAATCACCAGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30161874 192 - 170955103 TCGTGCTGATGGGACTGAAGGAAAGGCTTAAATCCAATGGAAGCTGCCTGTGTTGGCAATTTAGGGCGGAGATGGCTGGAGG---GAGTAGAAGCAGAGAGGAAGGGTGATGATCCCTCTGTGACCAAGACACAATCCTGTTCCTTCTTTTAGTCAGGACACCCCTGATGACAGACTGTGGGACAATCACCAGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     410694 192 +   1495729 AAGTGCTGATGGGACTGAAGGAAAGGCTTAAATCCAATGGAAGCTGCCTGTGTTGGCAATTTAGGGCCGAGATGGCTGGAGG---GAGTAGAAGCAGAGAGGAAGGGTGATGATCCCTCTGTGACCAAGACACAATCCTGTCCCTTCTTTTAGTCAGGACACCCCTGATGACAGACTGTGGGACAATCACCAGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     514546 192 -    863181 TCGTGCTGATGGGACTGAAGGAAAGGCTTAAATCCAGTGGAATCTGCCTGTGTTGGCAATTTAGGGCCGAGATGGCTGGAGG---GAGTAGAAGCAGAGAGGAAGGGTGATGATCCTTCTGTGACCAAGACACAATCCTGTCCCTTCTTTTAGTCAGGACACCCCTGATGACAGACTGTGGGACAATCACCAGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29661435 192 -  71996105 TCGTGCTGATGGGACTGAAGGAAAGGCTTAAATCCAATGGAAGCTGCCTGTGTTGGCAATTTAGGGCGGAGATGGCTGGAGG---GAGTAGAAGCAGAGAGGAAGGGTGATGATCCCTCTGTGACCAAGACACAATCCTGTTCCTTCTTTTAGTCAGGACACCCCTGATGACAGACTGTGGGACAATCACCAGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     396583 192 -    735854 TCGTGCTGATGGGACTGAAGGAAAGGCTTAAATCCAATGGAATCTGCCTGTGTTGGCAATTTAGGGCCGAGATGGCTGGAGG---GAGTAGAAGCAGAGAGGAAGGGTGATGATCCCTCTGTGACCAAGACACAATCCTGTCCCTTCTTTTAGTCAGGACACCCCTGATGACAGACTATGGGACAATCACCAGGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     299730 192 -   1829203 TCGTGCTGATGGGACTGAAGGAAAGGCTTAAATCCAGTGGAATCTGCCTGTGTCGGCAATTTAGGGCCGAGATGGCTGGAGG---GAGTAGAAGCAGAGAGGAAGGGTGATGATCCCTCTGTGACCAAGACACAATCTTGTCCCTTCTTTTAGTCAGGACACCCCTGATGACAGACTATGGGACAATCACCAGGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30498109 177 + 171630274 TAGTGTGGATAAGGCTAAA-----GTCTTAGATCCAGTGGAATCTGCCTATGTTGGCAATTTGGGACAGAGATGGGTTGGCG---GAGTAGATGCAGAGAGGATGGGTGCTGATCCCTCTGTGACCAAGACACAGTCGGGTTCC----TTTGCTCAGGACACCCCTGATGAC------TGGGACAATCACCAGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           304617 183 +    515838 TAGTGTGGATGAGGCTGAA-----GGCTTAGATCCAGTGGAATCTGCCTGTGTTGGCAATTTGGGGCCGAGGTGGGTTGGGG---GAGTAGATGCAGAGAGGATGGGTGCTGATCCCTCTGTGACCAAGACACAATCCTGTCCCTTCTTTTACTCAGGACACCCCTGATGACAG----TGGGACAATCACCAGGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     935471 183 -   1771730 TAGTGTGGATGAGGCTGAA-----GGCTTAGATCCAGTGGAATCTGCCTGTGTTGGCAATTTGGGGCAGAGATGGGTTGGGG---GAGTAGATGCAGAGAGGATGGGTGCTGATCCCTCTGTGACCAAGACACAGTCCTGTTCCTTCTTTTACTCAGGACACCCCTGATGACAG----TGGGACAATCACCAGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     118083 183 -    486031 TAGGGTGGATGAGGCTGAA-----GGCTTAGATCCAGTGGAATCTGCCTATGTTGGCAATTTGGGGCGGAGATGGGTTTGGG---GAGTAGATGCAGAGAGGATGGGTGCTGATCCCTCTGTGACCAAGACACAGTCCTGTTCCTTCTTTTACTCAGGACACCCCTGATGACAG----TGGGGCAATCATCAGGC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     223616 191 -   1411461 CAGAGCTGATGAGGCTGAAGGAAAAGCTTAAATCCAGTAGAGTCTGTCTGTGGTGACAACTTAGGGCTGACAAGGGTGGGGGCAGGAGTGGGTGCAGAGAGGATGGGTCCTGATCCCTCTGTCACCAAGACACAACCCTGTCCCTTCCTTTACTCAGGACTTCCCTCATGACAG----TGGGATAATCACCAGAC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           349600 189 +  18854210 CACTGCTGGTGAAGGTGAAGGGAAGGCTTAAATCCAGTGGAG--TGTCTGTAGCAACAACTTGGGGCTAACAAGGGTTGAGGGGCTAGTAGGCTCCAACAGGGTGAGTCCTGGTCCTTCTATGGCCAAGACACAACCCTGCCCTTTCCTTTACACAGGACTTCCCTGCTGACAG----TGGGACAGTCACCAGAC
i otoGar3.GL873550         C 0 I 1876
s canFam3.chr35            26364519  76 +  26524999 ---------------------GAACGCTGAAAGCTAGTGGGACCT--CTGTGACCCCA---------------------------GA-------------------------------CGGTCACC------CAGTCCTGTCCCG---TTTACTCAGGA-----------------------------ACCAGAC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I

a score=715443.000000
s hg38.chr6_GL000254v2_alt  1517196 78 +   4827813 CCCATTGTTTAATAAAACGAGGCTTTTGCTC---AGGTCTAACTAACCTCTCAAATAT---------TTGTTATTACTGCAGTTATTATT
s panTro5.chr6             30385932 78 + 175400573 CCCGTTGTTTAATAAAACGAGGCTTTTGCTC---AGGTCTAACTAACCTCTCAAATAT---------TTGTTATTATTGCAGTTATTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30620259 78 + 173848474 CCCGTTGTTTAATAAAACGAGGCTTTTGCTC---AGGTCTAACTAACCTCTCAAATAT---------TTGTTATTATTGCAGTTATTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     327985 78 +   2037526 CCCATTGTTTAATAAAACGAGGCTTTTGCTC---AGGTCTAACTAACCTCTCAAATAT---------TTGTTATTATTGCAGTTATTATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74994448 78 + 122973662 CCCACTGTTTAATAAAATGAGGTTTTTGCTC---AGGTCTAACTAACCTCTCAAATAT---------TTGTTATTATTGCAGTTATTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30872606 74 + 172585720 CCCACTGTTTAATAAAATGAGGCTTTTGCTC---AGGT----CTAACCTCTCAAATAT---------TTGTCATTATTGCAGTTATTATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30162066 74 - 170955103 CCCACTGTTTAATAAAATGAGGCTTTTGCTC---AGGT----CTAACCTCTCAAATAT---------TTGTCATTATTGCAGTTATTATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     410886 77 +   1495729 CCCACTGTTTAATAAAATGAGGCTTTTGCTCAGTAGGT----CTAACCTCTCAAATAT---------TTGTTATTATTGCAGTTATTATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     514738 74 -    863181 CCCACTGTTTAATAAAATGAGGCTTTTGCTC---AGGT----CTAACCTCTCAAATAT---------TTGTTATTATTGCAGTTATTATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29661627 77 -  71996105 CCCACTGTTTAATAAAATGAGGCTTTTGCTCAGTAGGT----CTAACCTCTCAAATAT---------TTGTTATTATTGCAGGTATTATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     396775 74 -    735854 CCCACTGTTTAATAAAATGAGGCTTTTGCTC---AGGT----CTAACCTCTCAAATAT---------TTGTTATTATTGCAGTTATTATG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     299922 74 -   1829203 CCCACTGTTCAATAAAATGAGGCTTTTGCTC---AGGT----CTAACCTCTCAAATAT---------TTGTTATTATTGCAGTTATTATG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30498286 64 + 171630274 CCCACTGTTAAATAAAATAAGGCTTTTGCTC---AGGTCTAACTAACCTCTCAA--------------------CATTGCAG---TTATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           304800 64 +    515838 CCCACTGTTAAATCAAATGAGGCTTTTGCTC---AGGTCTAACTAACCTCTCAA--------------------TATTGCAG---TTATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     935654 67 -   1771730 CCCACTGTTAAATAAAATGAGGCTTTTGCTC---AGGTCTAACTAACCTCTCAA--------------------TATTGCAGTTATTATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     118266 67 -    486031 CCCACTGTTAAATAAAATGAGGCTTTTGCTC---AGGTCTAACTAACCTCTCAA--------------------TATTGCAGTTATTATT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     223807 87 -   1411461 CACGTTGTTTAATAGAATGAGGTTTTTCTTC---AGGTCTAACTAACCTCTCAAATATttattattattattattattattattattatt
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr35            26364595 77 +  26524999 TCTACTGTTCAAT-GAATGACATTGGTGTTC---AGGTCTAACTATCCCCTCAGAGAG---------TTACTAATATTACCATTATTATT
i canFam3.chr35            C 0 I 11
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e otoGar3.GL873550           349789 1876 +  18854210 I

a score=639219.000000
s hg38.chr6_GL000254v2_alt  1517274 58 +   4827813 TGGACACAGAAACAGACCACAGGTTAAAATAACTTTAAAAAGCAAAGTATTAATCCCT
s panTro5.chr6             30386010 58 + 175400573 TGGACACAGAAACAGACCACAGTTTAAAATAACTTTAAAAAGCAAAGTATTAATCCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30620337 58 + 173848474 TGGACACAGAAACAGACCACAGTTTAAAATAACTTTAAAAAGCAAAGTATTAATCCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     328063 58 +   2037526 TGGACACAGAAACAGACCACAGGTTAAAATAACTTTAAAAAGCAAAGTATTAATCCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74994526 58 + 122973662 TGGACACAGAAACAGACCACAGATTAAAATAACTTTACAAAGCAAAGTATGAATCCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30872680 58 + 172585720 TGGACACAGAAACAGACCACAGGTAAAAATAACTTTACAAAGCAAAGTATGAATCACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30162140 58 - 170955103 TGGACACAGAAACAGACCACAGGTAAAAATAACTTTACAAAGCGAAGTATGAATCACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     410963 58 +   1495729 TGGACACAGAAACAGACCACAGGTGAAAATAACTTTGCAAAGCGAAGTATGAATCCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     514812 58 -    863181 TGGACACAGAAACAGACCACAGGTAAAAATAACTTTACAAAGCGAAGTATGAATCACT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29661704 58 -  71996105 TGGACACAGAAACAGACCACAGGTGAAAATAACTTTACAAAGCGAAGTATGAATCCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     396849 58 -    735854 TGGACACAGAAACAGACCACAGGTAAAAATAACTTTACAAAGCGAAGTATGAATCACT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     299996 58 -   1829203 TGGACACAGAAACAGACCACAGGTAAAAATAACTTTACAAAGTGAAGTATGAATCCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30498350 58 + 171630274 TGGACACAGAAACAGACCACAGGTTAAAAGAACTTTACAAAGCAAAGTATGAATCCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           304864 58 +    515838 TGGACACAGAAACAGACCACAGGTTAAAATAACTTTACAAAGCAAAGTATGAATCCCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     935721 56 -   1771730 TGAACACAGAAACAGACCACAGGTTAAAA-AACTTTACAAAGC-AAGTGTAAATCCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     118333 58 -    486031 TGGACACAGAAACAGACCACAGGTTAAAATAACTTTACAAAGCGAAGTATGAATCCCT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     223894 58 -   1411461 TGGGCACAGAAACAGACCACAGGCTGAAATAACTTTACAAAGCAAGGTGTGAATCCCT
i proCoq1.NW_012149775v1   C 0 I 165
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e canFam3.chr35            26364672 11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I

a score=1067416.000000
s hg38.chr6_GL000254v2_alt  1517332 123 +   4827813 ATACAAGTGATGTTTCCTTCCACCCCTACCCTTTCTCCTCTCAAGTTGAACACTCACATTCTCACCCTTCCACCCCAACCTCTG-AAAAAAATCTGCCTTCAACTCCAATCCAGGTTCCCTGTA
s panTro5.chr6             30386068 120 + 175400573 ATACAAGTGACGGTTCCTTCCACCCCTACCCTTTCTCCTCTCAAGTTGAACACTCACATTCTCACCCTTCCACCCCAA---ATG-AAAAAAATCTGCCTTCAACTCCAATCCAGGTTCCCTGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30620395 120 + 173848474 ATACAAGTGATGGTTCCTTCCACCCCTACCCTTTCTCCTCTCAAGTTGAACACTCACATTCTCACCCTTCCACCCCAA---CTG-AAAAAAATCTGCCTTCAACTCCAATCCAGGTTCCCTGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     328121 123 +   2037526 ATACAAGTGATGGTTCCTTCCACCCCTACCCTTTCTCCTCTCAAGTTGAACACTCACATTCTCACCCTTCCACCCCAACCTCTG-AAAAAAATCTGCCTTCAACTCCAATCCAGGTTCCCTGTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74994584 117 + 122973662 ATACAAGTGATGGTTC------CCCCCACCCCTTCTCCTCTCAAGTTGAGCACTCACATCCTTACCCTTCCACCCCAACCTCTG-AAAAAAATCTGCCTTCAACTCCGATCCAGGTTCCCTGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30872738 123 + 172585720 ATACAAGTGATGGTTTCCCCAACCCCTACCCTTTCTCCTCTCAAGTTGAATACTCACATTCTCATCCTTCCACCCCAACCTCTG-AAAAAAACCTGCCTTCAACTCCAATCCAGATTCCCTGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30162198 123 - 170955103 ATACAAGTGATGGTTTCCCCAACCCCTACCCTTTCTCCTCTCAAGTTGAATACTCACATTCTCATCCTTCCACCCCAACCTCTG-AAAAAAACCTGCCTTCAACTCCAATCCAGATTCCCTGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     411021 123 +   1495729 ATACAAGTGATGGTTTCCCCAACCCCTACCCTTTCTCCTCTCAAGTTGAACACTCACATTCTCATCCTTCCACCCCAACCTCTG-AAAAAAATCTGCCTTCGACTCCAATCCAGGTTCCCTGCA
i macNem1.NW_012012100v1   C 0 I 21
s cerAty1.NW_012002535v1     514870 123 -    863181 ATACAAGTGATGGTTTCCCCAACCCCTACCCTTTCTCCTCTCAAGTTGAATACTCACATTCTCATCCTTCCACCCCAACCTCTG-AAAAAAATCTGCCTTCAACTCCAATCCAGGTTCCCTGTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29661762 123 -  71996105 GTACAAGTGATGGTTTCCCCAACCCCTACCCTTTCTCTTCTCAAGTTGAACACTCACATTCTCATCCTTCCACCCCAACCTCTG-AAAAAAATCTGCCTTCAACTCCAATCCAGGTTCCCTGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     396907 107 -    735854 ATA----------------CAACCCCTACCCTTTCTCCTCTCAAGTTGAATACTCACATTCTCATCCTTCCACCCCAACCTCTG-AAAAAAATCTGCCTTCAACTCCAATCCAGGTTCCCTGTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     300054 123 -   1829203 ATACAAGTGACGGTTTCCCCAACCCCTACCCTTTCTCCTCTCAAGTTGAACACTCACATTCTCATCCTTCCACCCCAACCTCTG-AAAAAAATCTGCCTTCAACTCCAATTCAGGTTCCCTGTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30498408 119 + 171630274 ATACAGTTGATGGTTTCCCCAACCCCTACCCTTTCTCCTCTCCAGTGGAACACT--CATTCTCA-CCTCCCACCCTAACCTCTG--AAAAAATCTGCCTTCAACTCCAATCCAGGGTCCCTGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           304922 121 +    515838 ATACAGTGGATGGTTTCCCCAACCCCTACCCTTTCTCCTCTCCAGTGGAACACT--CGTTCTCA-CCTCCCACCCTAACCTCTGAAAAAAAATCTGCCTTCAACTCCAGTCCAGGTTCCCTGTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     935777 119 -   1771730 ATACAGTTGATGGTTGCCCCAACCCCTACCCTTTCTCCTCTCCAGTAGAACACT--CATTCTCA-CCTCCCACCCTAACCTCTG--AAAAAATCTGCCTTCAACTGCACTCCAGGTTCCCTGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     118391 103 -    486031 ATACAGTTGATGGTTTCCCCGACCCCTACCCTTTCTCTTCTCCAGTGGAACACT--CATTCTCA-CCTCCC------------------AAATCTGCCTTCAACTCCAATCCATGTTCCCTGTA
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     223952 165 -   1411461 I
e canFam3.chr35            26364672  11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I

a score=273711.000000
s hg38.chr6_GL000254v2_alt  1517455 33 +   4827813 GTGTAAGACAATACCCTGTGTACAAGAACACTT
s panTro5.chr6             30386188 33 + 175400573 GTGTAAGACAATACCCTGTGTACAAGAACACCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30620515 33 + 173848474 GTGTAAGACAATACCCTGTGTACAAGAACACCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     328244 33 +   2037526 GTGTAAGACAATACCCTGTGTACAAGAACACCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74994701 33 + 122973662 GTGTAAGACGATACTCTATGTACAAGAACACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30872861 33 + 172585720 CTGTAAGACAATACTCTATGTACAAGAACACTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30162321 33 - 170955103 CTGTAAGACAATACTCTATGTACAAGAACACTT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     514993 33 -    863181 CTGTAAGACAATACTCTGTGTGCAAGAACACTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29661885 33 -  71996105 CTGTAAGACAATACTCTACGTACAAGAACACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     397014 33 -    735854 CTGTAAGACAATACTCTGTGTGCAAGAACACTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     300177 33 -   1829203 CTGTAAGACAATACCCTGTGTACAAGAACACTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30498527 33 + 171630274 GTGTAAGATGATACTCTATGTAGAAGAACACCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           305043 33 +    515838 GTGTAAGACGATACTCTACGTACAAGAACACCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     935896 33 -   1771730 GTGTAAGACGATACTCTACGTACAAGAACACCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     118494 33 -    486031 CTGTAAGATGATACTCTATGTACAAGAACACCT
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     223952 165 -   1411461 I
e canFam3.chr35            26364672 11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I
e macNem1.NW_012012100v1     411144 21 +   1495729 I

a score=1328430.000000
s hg38.chr6_GL000254v2_alt  1517488 142 +   4827813 TAGG----GTCggcacggtggcttgcgccagtaatcccaacactttgggaggctgaggcaggtagatcacttaaggtcaggagtttaagaccagcctggacagcatggtgaaaccctgtctctattaaaaatataaaaattag---ctg
s panTro5.chr6             30386221 142 + 175400573 TAGG----GTCggcacggtggcttgtgccagtaatcccaacactttgggaggctgaggcaggtagatcacttaaggtcaggagtttaagaccagcctggacagcatggtgaaaccctgtctctattaaaaatataaaaattag---ctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30620548 142 + 173848474 TAGG----GTCggcacggtggcttgtgccagtaatcccaacactttgggaggctgaggcaggtagatcacttaaggtcaggagtttaagaccagcctggacagcatggtgaaaccctgtctctattaaaaatataaaaattag---ctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     328277 142 +   2037526 TAGG----GTCggcacggtggcttgcgccagtaatcccaacactttgggaggctgaggcaggtagatcacttaaggtcaggagtttaagaccagcctggacagcatggtgaaaccctgtctctattaaaaatataaaaattag---ctg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74994734 142 + 122973662 TAGG----GTCAgcacggtggctcacgccagtaatcccaacactttgggaggctgaggcgggtggatcacttaaggtcaggagttcaagaccagcctggacaatacggtgaaaccctgtctctattaaaaataaaaaaattag---ctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30872894 142 + 172585720 TAGT----GTCAgcacggtggctcacgccagtaatcccagcactttggaaggctgaggcgggtggatcacttaaggtcaggagttcgataccagcctggacaacatggtgaaaccctgtctctactaaaaatataaaaattag---ctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30162354 142 - 170955103 TAGT----GTCAgcacggtggctcacgccagtaatcccagcactttggaaggctgaggcgggtggatcacttaaggtcaggagttcgataccagcctggacaacatggtgaaaccctgtctctactaaaaatataaaaattag---ctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     411165 142 +   1495729 TTgg----ctgggtgttgtggctcatgcctgtaatcccagcactttgggaggctgaggcgggtggatcacttaaggtcaggagttcgataccagcctggacaacatggtgaaaccctgtctctactaaaaatataaaaattgg---ctg
i macNem1.NW_012012100v1   I 21 C 0
s cerAty1.NW_012002535v1     515026 142 -    863181 TAGT----GTCAgcacggtggctcacgccagtaatcccagcactttgggaggctgaggcgggtggatcacttaaggtcaggagttcgataccagcctggacaacatggtgaaaccctgtctctactaaaaatataaaaactag---ctg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29661918 142 -  71996105 TAGT----GTCAgcacggtggctaatgccagtaatcccagcactttgggaggctgaggctggtggatcacttaaggtcaggagttcgataccagcctgaacaacatggtgaaaccctgtctctactaaaaatataaaaattgg---ctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     397047 142 -    735854 TAGT----GTCAgcacggtggctcacgccagtaatcccagcactttgggaggctgaggcgggtggatcacttaaggtcaggagttcgataccagcctggacaacatggtgaaaccctgtctctactaaaaatataaaaattag---ctg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     300210 142 -   1829203 TAGT----GTCAgcacggtgtctcacgccagtaatcccagcactttgggaggctgaggcaggtggatcacttaaggtcaggagttcgataccagcctggacaacatggtgaaaccctgtctctactaaaaatataaaaattag---ctg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30498560 143 + 171630274 TAGGATCAGTCAgcatggtggcacacatcagtaatcccaacactttgggaggccaaggcgggtggatcacttgaggtcaagagttcgagaccagcctagataacatggtgaaaccccatctctactaaaagtacaaaaagtag------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           305076 139 +    515838 TAGG----GTCAgcacggtggctcacaccagtaatcccaacactttgggaggccaaggcgggtggatcacttgaggtcaagaattcgagaccagcctggacaacatggtaaaaccctatctctactaaaagtacgaaaattag------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     935929 138 -   1771730 TAGg----gccggcatggtggctcacaccagtaatcccaacactttgggaggccaaggcgggtggatcacttgaggtcaagagttcgagaccaacatggacaacatggtgaaaccc-atctctattaaaagtacaaaaattaa------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     118527 142 -    486031 GAGG----GTCAgcacggtggctcacatcagtaatcccaacactttgggaggccaaggcaggtggatcacttgaggtcaagagttcaagaccagcctggacaacatggtgaaaccccatctctactaaaagtacaaaaattagctg---
i aotNan1.NW_018496901v1   C 0 I 960
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     223952 165 -   1411461 I
e canFam3.chr35            26364672  11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I

a score=483503.000000
s hg38.chr6_GL000254v2_alt  1517630 62 +   4827813 ggcgagatggcaggcgcctgtaatcccagctgctcaggaggctgaggcaggagaatcactta
s panTro5.chr6             30386363 62 + 175400573 ggcgagatggcaggcgcctgtaatcccagctgctcaggaggctgaggcaggagaatcactta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30620690 62 + 173848474 ggcgagatggcaggcgcctgtaatcccagctgctcaggaggctgaggcaggagaatcactta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     328419 62 +   2037526 ggcgagatggcaggcgcctgtaatcccagctgctcaggaggctgaggcaggagaatcactta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74994876 62 + 122973662 agcgtgatggcgggcgcctgtaatcccagctactcaggaggctgaggcaggtgaatcacttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30873036 62 + 172585720 ggcatgatggcaggcgcctgtaatcccagctactcaggaggctgaggcgggagaatcactta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30162496 62 - 170955103 ggcatgatggcaggcgcctgtaatcccagctactcaggaggctgaggcaggagaatcactta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     411307 62 +   1495729 ggcatgatggcaggtgcctgtaatcccagctactcaggaggctgaggcaggagaatcactta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     515168 62 -    863181 ggcatgatggcaggcgcctgtaatcccagctgctcaggaggctgaggcaggagaatcactta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29662060 62 -  71996105 ggcatgatggcaggtgcctgtaatcccagctactcaggaggctgaggcaggagaatcactta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     397189 62 -    735854 ggcatgatggcaggcgcctgtaatcccagctactcaggaggctgaggcaggagaatcactta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     300352 62 -   1829203 ggcatgatggcaggcgcctgtaatcccagctactcaggaggctgaggcaggagaatcactta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30498703 45 + 171630274 -----------------ctgtaatcttagcaactcaggtggctgaggcaggagaatcacttc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           305215 45 +    515838 -----------------ctgtaatcttagcaactcaggtggctgaggcaggagaatcactta
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     936067 45 -   1771730 -----------------ctgtaatcttagcaactcaggtggctgaggcaggaggatcactta
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     223952 165 -   1411461 I
e canFam3.chr35            26364672 11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I
e aotNan1.NW_018496901v1     118669 960 -    486031 I

a score=606116.000000
s hg38.chr6_GL000254v2_alt  1517692 87 +   4827813 aaccagggaggcggaggttgcagtgagctaagatcaagccactgcattccagcccgagtgacggagtgagactccatctca-------aaaaaa
s panTro5.chr6             30386425 94 + 175400573 aaccagggaggcggaggttgcagtgagccaagatcaagccactgcattccagcccgagtgacagagtgagactccatctcaaaaaaacaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30620752 87 + 173848474 aaccagggaggcggaggttgcagtgagctaagatcaagccactgcattccagcccgagtgacagagtgagactccatctca-------aaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     328481 87 +   2037526 aaccagggaggtggaggttgcagtgagctaagatcaagccactgcattccagcccgagtgacagagtgagactccatctca-------aaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30873098 93 + 172585720 aaccagggagaaagaggttgcagtaagctaatgtcgagccactgcattccagcccaagtgacagagtgagactccatctcaaaaaca-aacaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30162558 93 - 170955103 aaccagggagaaagaggttgcagtaagctaatgtcgagccactgcattccagcccaagtgacagagtgagactccatctcaaaaaca-aacaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     411369 93 +   1495729 aaccagggagacagaggttgcagtgagctaatatcgagccactgcattccagcccaagtgacagagtgagactccatctcaaaaaca-aacaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     515230 93 -    863181 aaccagggagaaagaggttgcagtaagctaatgtcgagccactgcattccagcccaagtgacagagtgagactccatctcaaaaaca-aacaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29662122 93 -  71996105 aaccagggagacagaggttacagtgagctaatatcgagccactgcattccagcccaagtgacagagtgagactccatctcaaaaaca-aacaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     397251 93 -    735854 aaccagggagaaagaggttgcagtgagctaatatcgagccactgcattccagcccaagtgacagagtgagactccatctcaaaaaca-aacaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     300414 93 -   1829203 aaccagggagaaagagggtgcagtgagctaatatcgagtcactgcattccagcccaagtgacagagtgagactccatctcaaaaaca-aacaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30498748 87 + 171630274 aacctgggaggcagagattacagtgaaccaagatcacatcactgcactctagcctgggtgacacagtgacactccatctca-------aaaaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           305260 87 +    515838 aacctgggaggcagaggttgcagtgaaccaagatcgcactactgcactctagcctgggtgacacagtgagactccatctca-------aaaaaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     936112 87 -   1771730 aacctgggaggcagaggttgcagtgaaccaagatcacaccactgcactctagcctgggtgacacagtgagattccatctca-------aaaaaa
i cebCap1.NW_016107755v1   C 0 I 83
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     223952 165 -   1411461 I
e canFam3.chr35            26364672 11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I
e aotNan1.NW_018496901v1     118669 960 -    486031 I
e nomLeu3.chr1a            74994938  0 + 122973662 C

a score=307148.000000
s hg38.chr6_GL000254v2_alt  1517779  80 +   4827813 ------------------------------------caaaaaaca-aa---------aaaCAggctaggcgcggtggctcacggtggtaggccgaggcaggtgggtcacctgaggtcaggagtttg
s panTro5.chr6             30386519  80 + 175400573 ------------------------------------caaaaaaca-aa---------aaacaggcgaggcgcggtggctcacgctggtaggccgaggcaggtgggtcacctgaggtcaggagtttg
i panTro5.chr6             C 0 I 5
s panPan2.chr6             30620839  81 + 173848474 ------------------------------------caaaaaaaacaa---------aaaCAggcgaggcgcggtggctcacgctggtaggccgaggcaggtgggtcacctgaggtcaggagtttg
i panPan2.chr6             C 0 I 5
s gorGor5.CYUI01015528v1     328568  76 +   2037526 ------------------------------------caaaa-----aa---------aaaCAggcgaggctcggtggctcacgctggtaggccgaggcaggtgggtcacctgaggtcaggagtttg
i gorGor5.CYUI01015528v1   C 0 I 5
s rheMac8.chr4             30873191  78 + 172585720 ------------------------------------caaacaaa--ca---------aaaCAGGCTGGGTGTTGTGG-TCTTGCCAGTATgccgaggcaggtggatcacctgagatcaggagttcg
i rheMac8.chr4             C 0 I 5
s macFas5.chr4             30162651  78 - 170955103 ------------------------------------caaacaaa--ca---------aaaCAGGCTGGGTGTTGTGG-TCATGCCAGTATgccgaggcaggtggatcacctgagatcaggagttcg
i macFas5.chr4             C 0 I 5
s macNem1.NW_012012100v1     411462  82 +   1495729 ------------------------------------caaacaaa--ca------aacaaacaGGTTGGGTGTTGTGGCTCATGCCAGTATgctgagacaggtggatcacctgagatcaggagtttg
i macNem1.NW_012012100v1   C 0 I 5
s cerAty1.NW_012002535v1     515323  78 -    863181 ------------------------------------caaacaaa--ca---------aaaCAGGCTGGGTGTTGCGG-TCATGCCAGTATgccgaggcaggtggatcacctgagatcaggagttcg
i cerAty1.NW_012002535v1   C 0 I 5
s chlSab2.chr17            29662215  78 -  71996105 ------------------------------------caaacaaa---a---------aaaCAGGTTGGGTGTTGTGGCTCATGCCAGTATgctgaggcaggtggatcacctgagatcaggagtttg
i chlSab2.chr17            C 0 I 5
s manLeu1.NW_012107142v1     397344  78 -    735854 ------------------------------------caaacaaa--ca---------aaaCAGGCTGGGTGTTGTGG-TCATGCCAGTATgccgaggcaggtgggtcacctgagatcaggagatcg
i manLeu1.NW_012107142v1   C 0 I 5
s colAng1.NW_012115577v1     300507  88 -   1829203 ------------------------------------caaagaaa--caaaaaaaaAAAAACAggctgggtgttgtggctcatgccagtatgccgaggcaggtggatcacctgagatcaggagttcc
i colAng1.NW_012115577v1   C 0 I 5
s calJac3.chr4             30498835  81 + 171630274 c---------------------------------gacaaacaaa--aa---------aaaCATgctgggcgcgacggctcacacatgtaatcccag-caccttgggaggccgaagtcaggagttca
i calJac3.chr4             C 0 I 5
s saiBol1.JH378341           305347 109 +    515838 CCTCTAAAACTAAAGACTAAAAGAGTCTTaaaaaaaaaaaaaaa--aa---------aaaaaggctgggcatgatggctcaca-----aatcccag-catcttgggaggccgaagtcaggagttca
i saiBol1.JH378341         C 0 I 5
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     223952 165 -   1411461 I
e canFam3.chr35            26364672  11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I
e aotNan1.NW_018496901v1     118669 960 -    486031 I
e cebCap1.NW_016107755v1     936199  83 -   1771730 I
e nomLeu3.chr1a            74994938   0 + 122973662 C

a score=801438.000000
s hg38.chr6_GL000254v2_alt  1517859 105 +   4827813 agcctggccaacatggtgaaacccc--atctccactaaatatacaaaaattagctgggtgtggtggcaga-----------ccagctacttgggaggctgaagcaggggaatcacttg
s panTro5.chr6             30386604 105 + 175400573 agcctggccaacatggtgaaacccc--atctctactacatatacaaaaattagcggggtgtggtggcaga-----------ccagctacttgggaggctgaagcaggggaatcacttg
i panTro5.chr6             I 5 C 0
s panPan2.chr6             30620925 105 + 173848474 agcctggccaacatggtgaaacccc--atctctactacatatacaaaaattagcggggtgtggtggcaga-----------ccagctacttgggaggctgaagcaggggaatcacttg
i panPan2.chr6             I 5 C 0
s gorGor5.CYUI01015528v1     328649 105 +   2037526 agcctggccaacatggtgaaacccc--atctctactacatatacaaaaattagcggggtgtggtggcaga-----------ccagctacttgggaggctgaagcaggggactcacttg
i gorGor5.CYUI01015528v1   I 5 C 0
s rheMac8.chr4             30873274 115 + 172585720 agcctggccaaca-ggtgaaacccc--atctctactaaatatacaaaaattagctgggtgtggtggcggacacctgtgatcccagctacttggaaggctgaggcaggggaatcacttg
i rheMac8.chr4             I 5 C 0
s macFas5.chr4             30162734 115 - 170955103 agcctggccaaca-ggtgaaacccc--atctctactaaatatacaaaaattagctggatgtggtggcggacacctgtgatcccagctacttggaaggctgaggcaggggaatcacttg
i macFas5.chr4             I 5 C 0
s macNem1.NW_012012100v1     411549 116 +   1495729 agcctggccaacatggtgaagcccc--atctctactaaatatacaaaaattagctgggtgtggtggcggacacctgtgatcccagctacttggaaggctgaggcaggggaatcacttg
i macNem1.NW_012012100v1   I 5 C 0
s cerAty1.NW_012002535v1     515406 115 -    863181 tgcctggccaaca-ggtgaaacccc--atctctactaaatatacaaaaattagctgggtgtggtggcagatacctgtgatcccagctacttggaaggctgaggcaggggaatcacttg
i cerAty1.NW_012002535v1   I 5 C 0
s chlSab2.chr17            29662298 116 -  71996105 agcctggacaacatggtgaaacccc--atctctactaaatatacaaaaaatagctgggtgtggtggcggacacttgtgatcccagctactcggaaggctgaggcaggggaatcacttg
i chlSab2.chr17            I 5 C 0
s manLeu1.NW_012107142v1     397427 115 -    735854 agcctggccaaca-ggtgaaacccc--atctctactaaatatacaaaaattagctgggtgtggtggcggacacctgtgatcccagctacttggaaggctgaggcaggggaatcacttg
i manLeu1.NW_012107142v1   I 5 C 0
s colAng1.NW_012115577v1     300600 115 -   1829203 agcctggccaaca-ggtgaaacccc--atctctactaaatatacaaaaattagctgggtgtggtggcggacacttgtgatcccagctacttggaaggctgaggcaggggaatcacttg
i colAng1.NW_012115577v1   I 5 C 0
s calJac3.chr4             30498921 118 + 171630274 agcctggccaacctggtgaaaccccccatctctactaaaaatacaaaaattagctgggtatggtggcagacgcctgtaatccaagctacttgggagactgaggcaggggaatcacttg
i calJac3.chr4             I 5 C 0
s saiBol1.JH378341           305461 118 +    515838 agcctggccaacctggtgaaaccccctacctctactaaaaatacaaaaattagctgggtatggtggcagacgcctgtaatccaagctacttgggagactgaggcaggagaatcacttg
i saiBol1.JH378341         I 5 C 0
s cebCap1.NW_016107755v1     936282 118 -   1771730 agcctggccaacctggtgaaaccccccatctctactaaaaatacaaaaattagctgggtatggtggcagacgcctgtaatccaagctacttgggaggctgaggcaagggaatcacttg
i cebCap1.NW_016107755v1   I 83 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     223952 165 -   1411461 I
e canFam3.chr35            26364672  11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I
e aotNan1.NW_018496901v1     118669 960 -    486031 I
e nomLeu3.chr1a            74994938   0 + 122973662 C

a score=1437178.000000
s hg38.chr6_GL000254v2_alt  1517964 184 +   4827813 aacccaggaggcagaggttgcagtgagctgagattgt----accactgcactccagcctgggtgacagagtgagactctgtctccaag--------aaacaaacaaacaaataaa-------------acaaaGAACATCTTCATTATTGCGTAAGCC-CTGCTCCTAAAGCATGGGTCAGATGTTTTAAAAGCACTCAAAGAGTTTGGA
s panTro5.chr6             30386709 181 + 175400573 aacccaggaggcagaggttgcagtgagctgagattgt----accactgcactgcagcctgggtgacagagtgagactctgtctccaag--------aaacaaacaaacaaataaa-------------acaaaGAACA---TCATTATTGCGTAAGCC-CTGCTCCTAAAGCATGGGTCAGATGTTTTAAAGGCACTCAAAGATTTTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30621030 181 + 173848474 aacccaggaggcagaggttgcagtgagctgagattgt----accactgcactgcagcctgggtgacagagtgagactctgtctccaag--------aaacaaacaaacaaataaa-------------acaaaGAACA---TCATTATTGCGTAAGCC-CTGCTCCTAAAGCATGGGTCAGATGTTTTAAAGGCACTCAAAGATTTTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     328754 184 +   2037526 aacccaggaggcagaggttgcagtgagctgagattgt----accactgcactgcagcctgggtgacagagtgagactctgtctccaag--------aaacaaacaaacaaataaa-------------acaaaGAACATCTTCATTATTGCATAAGCC-CTGCTCCTAAAGCATGGGTCAGATGTTTTAAAGGCACTCAAAGAGTTTGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74994938 180 + 122973662 aacccgggaggcagagcttgcagtgagctgagatcgt----gccactgcactctagcctgggtgacagagtgagactctgtctccaag--------aaacaaacaaac----aaa-------------acaaagaaCATCTTCATTACTGCATAAGCC-CTGCTCCTAAAGCATGGGTCAGATGTTTTAAAGGCACTCAAAGAGTTTGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30873389 183 + 172585720 aaccc-ggaggcagaagttgcagtgagctgagattgc----accactgcaccccagcctgggtgacagagtaagactccgtctccaag--------aaacaaacaaacaaacaaa-------------acaaaGAACATCTTCATTATTGCGTGAGCC-CTGCTCCTAAAGCATGGGTCAGATGTTTCAAAGGCACTCAAAGAGTTTGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30162849 183 - 170955103 aaccc-ggaggcagaagttgcagtgagctgagattgc----accactgcaccccagcctgggtgacagagtaagactccgtctccaag--------aaacaaacaaacaaacaaa-------------acaaaGAACATCTTTATTATTGCGTGAGCC-CTGCTCCTAAAGCATGGGTCAGATGTTTCAAAGGCACTCAAAGAGTTTGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     411665 187 +   1495729 aaccc-ggaggcagaggttgcagtgagctgagattgc----gccactgcaccccagcctgggtgacagagtgagactccatctccaag----aaacaaacaaacaaacaaacaaa-------------aCAAAGAACATCTTCATTATTGCCTGAGCC-CTGCTCCTAAAGCATGGGTCAGATGTTTCAAAGGCACTCAAAGAGTTTGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     515521 183 -    863181 aaccc-ggaggcagaagttgcagtgagctgagattgc----accactgcaccccagcctgggtgacagagtgagactccgtctccaag--------aaacaaacaaacaaacaaa-------------acaaaGAACATCTTCATTATTGCGTGAGCC-CTGCTCCTAAAGCATGAGTCAGATGTTTCAAAGGCACTCAAAGAGTTTGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29662414 191 -  71996105 aaccc-ggaggcagaggttgcagtgaactgagattgc----gccactgcaccccagcctgggtgacagagtgagactccatctccaagaaacagacaaacaaacaaacaaaCAAA-------------ATGAAGAACATCTTCATTACTGCGTGAGCC-CTGCTCCTAAAGCATGGGTCAGATGTTTCAAAGGCACTCAAAGAGTTTGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     397542 179 -    735854 aaccc-ggaggcagaagttgcagtgagctgagattgc----accactgcaccccagcctgggtgacagagtaagactccatctccaag------------aaacaaacaaacaaa-------------acaaagaaCATCTTCATTATTGCGTGAGCC-CTGCTCCTAAAGCATGGGTCAGATGTTTCAAAGGCACTCAAAGAGTTTGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     300715 190 -   1829203 aacct-ggaggcagaggttgcagtgagctgagattgcgtgtgtcactgcaccccagcctgggtgacagagtgagactccgtctccaag----aaacaaacaaacaaacaaacaaa-------------aCAAAGAACAT-TTCATTATTGCGTGAGCC-CTGCTCCTAAAGCATGGGTCAGATGTTTCAAAGGCACTCAAAGAGTTTGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30499039 195 + 171630274 aacctgggagtcagaggtttcagtgagctgagatctt----gccactgcactccagcctgggtgacaaagtgagact--gtttccaaa--------aaataaacaagcaaacaaacgaaaaTAACCA-AAAAAGAAAATCTTTGTTTTTGGGTGAGCCTCTGCTCCTAAAGCATGGGTCAGATGTTTTAAAGGCACTCAAAGAGTGTGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           305579 198 +    515838 aacctgggagttcgaggttgcagtgaactgagatctt----gccactgcactccagcctgggtgacagagtgagactcagtttccaaa--------aaacaaacaaggaaacaaaagaaaagaacaacaacaaaaaaaTCTTTCTTATTGGCTGAGCCCCTGCTCCTAAAGCATGGGTCAGATGTTTTAAAGGCACTCAAAGAGTTCGCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     936400 193 -   1771730 aacctgggagtcagaggttgcagtaagctgagatctt----gccactgcactccagcctgggtgac--agtgagactcggtttccaaa--------aaacaaacaagcaaacaaaagaaaaGAACA--AAAAAAAAAATCTTTG-TATTGGGTGAGCCCCTGCTCCTAAAGCATGGGTCAGATGTTTTAAAGGCACTCAAAGAGTTTGCA
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     223952 165 -   1411461 I
e canFam3.chr35            26364672  11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I
e aotNan1.NW_018496901v1     118669 960 -    486031 I

a score=194141.000000
s hg38.chr6_GL000254v2_alt  1518148 18 +   4827813 CCATATGTGAATTTTATT
s panTro5.chr6             30386890 18 + 175400573 CCATATGTGAATTTTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30621211 18 + 173848474 CCATATGTGAATTTTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     328938 18 +   2037526 CCATATGTGAATTTTATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74995118 18 + 122973662 CCATATGTGAATTTTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30873572 18 + 172585720 CCATATGTGAATTTTATT
i rheMac8.chr4             C 0 I 333
s macFas5.chr4             30163032 18 - 170955103 CCATATGTGAATTTTATT
i macFas5.chr4             C 0 I 333
s macNem1.NW_012012100v1     411852 18 +   1495729 CCATATGTGAATTTTATT
i macNem1.NW_012012100v1   C 0 I 314
s cerAty1.NW_012002535v1     515704 18 -    863181 CCATATGTGAATTTTATT
i cerAty1.NW_012002535v1   C 0 I 327
s chlSab2.chr17            29662605 18 -  71996105 CCATATGTGAATTTTATT
i chlSab2.chr17            C 0 I 319
s manLeu1.NW_012107142v1     397721 18 -    735854 CCATATGTGAATTTTATT
i manLeu1.NW_012107142v1   C 0 I 342
s colAng1.NW_012115577v1     300905 18 -   1829203 CCATATGTGAATTTTATT
i colAng1.NW_012115577v1   C 0 I 339
s calJac3.chr4             30499234 18 + 171630274 CCATATGTGAATTATATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           305777 18 +    515838 CCATATGTGAGTTTTATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     936593 18 -   1771730 CCATATGTGAATTTTATT
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     224117 18 -   1411461 CCATATGTGAATTCTATT
i proCoq1.NW_012149775v1   I 165 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e canFam3.chr35            26364672 11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I
e aotNan1.NW_018496901v1     118669 960 -    486031 I

a score=72780.000000
s hg38.chr6_GL000254v2_alt  1518166 7 +   4827813 TAAAAAT
s panTro5.chr6             30386908 7 + 175400573 TAAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30621229 7 + 173848474 TAAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     328956 7 +   2037526 TAAAAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74995136 7 + 122973662 TAAAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30873923 7 + 172585720 taaaaat
i rheMac8.chr4             I 333 C 0
s macFas5.chr4             30163383 7 - 170955103 taaaaat
i macFas5.chr4             I 333 C 0
s macNem1.NW_012012100v1     412184 7 +   1495729 taaaaat
i macNem1.NW_012012100v1   I 314 C 0
s cerAty1.NW_012002535v1     516049 7 -    863181 TAAAAAT
i cerAty1.NW_012002535v1   I 327 C 0
s chlSab2.chr17            29662942 7 -  71996105 taaaaat
i chlSab2.chr17            I 319 C 0
s manLeu1.NW_012107142v1     398081 7 -    735854 taaaaat
i manLeu1.NW_012107142v1   I 342 C 0
s colAng1.NW_012115577v1     301262 7 -   1829203 taaaAAT
i colAng1.NW_012115577v1   I 339 C 0
s calJac3.chr4             30499252 7 + 171630274 TAAAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           305795 7 +    515838 TAAAAAT
i saiBol1.JH378341         C 0 I 584
s cebCap1.NW_016107755v1     936611 7 -   1771730 TAGAAAC
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     224135 7 -   1411461 TAAAAAT
i proCoq1.NW_012149775v1   C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e canFam3.chr35            26364672 11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I
e aotNan1.NW_018496901v1     118669 960 -    486031 I

a score=10920.000000
s hg38.chr6_GL000254v2_alt  1518173 1 +   4827813 T
s panTro5.chr6             30386915 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30621236 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     328963 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74995143 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30873930 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30163390 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     412191 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     516056 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29662949 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     398088 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     301269 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30499259 1 + 171630274 T
i calJac3.chr4             C 0 I 591
s saiBol1.JH378341           306386 1 +    515838 T
i saiBol1.JH378341         I 584 C 0
s cebCap1.NW_016107755v1     936618 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     224142 1 -   1411461 T
i proCoq1.NW_012149775v1   C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e canFam3.chr35            26364672 11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I
e aotNan1.NW_018496901v1     118669 960 -    486031 I

a score=8666.000000
s hg38.chr6_GL000254v2_alt  1518174 1 +   4827813 G
s panTro5.chr6             30386916 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30621237 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            74995144 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30873931 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30163391 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     412192 1 +   1495729 G
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     516057 1 -    863181 G
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29662950 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     398089 1 -    735854 G
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     301270 1 -   1829203 G
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30499851 1 + 171630274 G
i calJac3.chr4             I 591 C 0
s saiBol1.JH378341           306387 1 +    515838 G
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     936619 1 -   1771730 G
i cebCap1.NW_016107755v1   C 0 I 590
s proCoq1.NW_012149775v1     224143 1 -   1411461 G
i proCoq1.NW_012149775v1   C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e canFam3.chr35            26364672 11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I
e aotNan1.NW_018496901v1     118669 960 -    486031 I
e gorGor5.CYUI01015528v1     328964 0 +   2037526 C

a score=1600169.000000
s hg38.chr6_GL000254v2_alt  1518175 166 +   4827813 TAACATGAATCAATGTGATGTGAATAATTAACCCTAACTTGACTGTTGGGGAAATAGAGGTTCTTGATATAAAAGAAGCCAGACAATGTGGGGTTTCTTCTGCCCCC-CAGTGTGGTGAGCAGAGCCATCCTTATCTGACC-----------CAAGTGGCTTGGTAGTCCAACCtagt
s panTro5.chr6             30386917 166 + 175400573 TAACATGAATCAATGTGATGTGAATAATTAACCCTAACTTGACTGTTGGGGAAATAGAGGTTCTTGATATAAAAGAAACCAGACAATGTGAGGTTTCTTCTGCCCCC-CAGTGTGGTGAGCAGAGCCATCCTTATCTGACC-----------CAAGTGGCTTGGTAGTCCAACCtagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30621238 166 + 173848474 TAACATGAATCAATGTGATGTGAATAATTAACCCTAACTTGACTGTTGGGGAAATAGAGGTTCTTGATATAAAAGAAACCAGACAATGTGAGGTTTCTTCTGCCCCC-CAGTGTGGTGAGCAGAGCCATCCTTATCTGACC-----------CAAGTGGCTTGGTAGTCCAACCTAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     328964 166 +   2037526 TAACATGAATCTATGTGATGTGAATAATTAACCCTAATTTGACTGCTGGGGAAATAGAGGTTCTTGATATAAGAGAAACCAGACAATGTGGGGTTTCTTCTGCCCCC-CAGTGTGGTGAGCAGAGCCATCCTTTTCTGACC-----------CAAGTGGCTTGGTAGTCCAACCtagt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74995145 166 + 122973662 TAACATGAATCATTGTGATGTGAATAATTAACCCTAACTTGACTGTTGGGCAAATAGAGGTTCTTGATATAAAAGAAACCAGACAATGTGGGGTTTCTTCTGCCCCC-CAGTGTGGTGAGCAGAGCCATCCTTGTCTGACC-----------CAAGTGGCTTGGTAGTCCAACCtagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30873932 167 + 172585720 TAACATGAATCATTGTGATGTAAATAATTAACCCTAACTTGACTGTTGGACAAATAGAGGTTCTTGATATAAAAGAAACCAGACAATGTGGGGTTTCTTCTGCCCCCTCAATGTGGTGAGCAGAGCCATCCTTGTCCGACC-----------TAAGTGGCTTGGTAGTCCAACCtagt
i rheMac8.chr4             C 0 I 6
s macFas5.chr4             30163392 167 - 170955103 TAACATGAATCATTGTGATGTAAATAATTAACCCTAACTTGACTGTTGGACAAATAGAGGTTCTTGATATAAAAGAAACCAGACAATGTGGGGTTTCTTCTGCCCCCTCAATGTGGTGAGCAGAGCCATCCTTGTCCGACC-----------TAAGTGGCTTGGTAGTCCAACCtagt
i macFas5.chr4             C 0 I 6
s macNem1.NW_012012100v1     412193 167 +   1495729 TAACATGAATCATCGTGATGTGAATAATTAACCCTAACTTGACTGTTGGACAAATAGAGGTTCTTGATATGAAAGAAACCAGACAATGTGGGGTTTCTTCTGCCCCCTCAGTGTGGTGAGCAGAGCCATCCTTGTCTGACC-----------TAAGTGGCTTGGTAGTCCAAGCtagt
i macNem1.NW_012012100v1   C 0 I 6
s cerAty1.NW_012002535v1     516058 167 -    863181 TAACATGAATCATTGTGATGTAAATAATTAACCCTAACTTGACTGTTGGACAAATAGAGGTTCTTGATATAAAAGAAACCAGACAATGTGGGGTTTCTTCTGCCCCCTCAATGTGGTGAGCAGAGCCATCCTTGTCCGACC-----------TAAGTGGCTTGGTAGTCCAACCtagt
i cerAty1.NW_012002535v1   C 0 I 6
s chlSab2.chr17            29662951 167 -  71996105 TAACATGAATCATTGTGATGTGAATAATTAACCCTAACTTGACTGTTGGACAAATAGAGGTTCTTGATATAAAAGAAACCAGACAATGTGGGGTTTCTTCTGCCCCCTCAGTGTGGTGAGCAGAGCCATCCTTGTCTGACC-----------TAAGTGGCTTGGTAGTCCAACCtagt
i chlSab2.chr17            C 0 I 6
s manLeu1.NW_012107142v1     398090 167 -    735854 TAACATGAATCATTGTGATGTAAATAATTAACCCTAACTTGACTGTTGGACAAATAGAGGTTCTTGATATAAAAGAAACCAGACAATGTGGGGTTTCTTCTGCCCCCTCAATGTGGTGAGCAGAGCCATCCTTGTCTGACC-----------TAAGTGGCTTGGTAGTCCAACCtagt
i manLeu1.NW_012107142v1   C 0 I 6
s colAng1.NW_012115577v1     301271 167 -   1829203 TAACATGAATCATTGTGATGTGAATAATTAACCCTAACTTGACTGCTGGACAAATAGAGGTTCTTGATATAAAAGAAACCAGACAATGTGGGGTTTCTTCTGCCCCCTCAGTGTGGTGAACAGAGCCATCCTTGTCTGACC-----------TAAGTGGCTTGGTAGTCCAACCtagt
i colAng1.NW_012115577v1   C 0 I 880
s calJac3.chr4             30499852 153 + 171630274 TAACATGAATCATTGTGATGTGAATAATTAACCCTAACTTGACTGTTGGGCAAATAGAGGTTCTTGATATAAAAGAAACCAGACAATGCGGGGTTTCTTCTGCCCCG-GAGTGTGGTGAGCAGAGCCATCC------------------------ATGACTTGGTAGTCCAACCtagt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           306388 166 +    515838 TAACGTGAATCATTGTGATGTGAAAAATTAACCCTAACTTGACTGTTGGGCAAATAGAGGTTCTTGATATAAAAGAAATCAGACAATGTGGGGTTTCCTCTGCCCCT-GAGTGTGGTGAGCAGAGCCATCTGTGTCTGACC-----------CAAGTGACTTGGTAGTCCAACCTACT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     937210 166 -   1771730 TAACGTGAATCACTGTGATGTGAAAAATTAACCCTAACTTGACTGTTGGGCAAATAGAGGTTCTTGATATAAAAGAAACAAGACAATGTGGGGTTCCTTCTGCCCCC-GAGTGTGGTGAGCAGAGCCGTCTGTGTCCGACC-----------CAAGTGCCTTGGTAGTCCAACCtagt
i cebCap1.NW_016107755v1   I 590 C 0
s proCoq1.NW_012149775v1     224144 171 -   1411461 TGACATGAATCATTGTGATGGGAATAATTACCCCTAACTTAACTCTTGGACAAATTGAGGCCCTTGATGTAAAAGAAACCAGAGAACTTGAGGTTTCTTCTGTCTCC-CAGCGTGGTAAACAGAACCACC--TGTCTGATCCAGAAAGAAAACAAGTGGCTTGGTCGTCCAACC----
i proCoq1.NW_012149775v1   C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e canFam3.chr35            26364672  11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I
e aotNan1.NW_018496901v1     118669 960 -    486031 I

a score=338105.000000
s hg38.chr6_GL000254v2_alt  1518341 49 +   4827813 agtagtagtagtggtagtagta----------------------gtagtaTTGCCCAATGCttattataaa
s panTro5.chr6             30387083 49 + 175400573 agcagtagtagtggtagtagta----------------------gtagtaTTGCCCAGTGCttattataaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30621404 37 + 173848474 AGCAGTAGTAGTG----------------------------------GTATTGCCCAGTGCttattataaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     329130 49 +   2037526 agtagtagtagtggtagtagtt----------------------gtagtaTTGCCCAGTGCttattataaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74995311 49 + 122973662 agtagtagtagtggtagtggtg----------------------gtagtaTTGCCCAATACTTATTATAAA
i nomLeu3.chr1a            C 0 M 1252
s rheMac8.chr4             30874105 55 + 172585720 agtagtagtagtagtagtagta-gtagta---------------gtagtaTTGCCCAGTGCttattataaa
i rheMac8.chr4             I 6 C 0
s macFas5.chr4             30163565 58 - 170955103 agtagtagtagtagtagtagta-gtagtagtag-----------GTAGCA-TGCCCAGTGCttattataaa
i macFas5.chr4             I 6 C 0
s macNem1.NW_012012100v1     412366 70 +   1495729 agtagtagtagtagtagtagca-gcagcagtagtagtagtagtagtagtaTTGCCCAGTGCttattataaa
i macNem1.NW_012012100v1   I 6 C 0
s cerAty1.NW_012002535v1     516231 61 -    863181 agtagtagtagcagtagcagta-gtagtagtagta---------gtagtaTTGCCCAGTGCttattataaa
i cerAty1.NW_012002535v1   I 6 C 0
s chlSab2.chr17            29663124 58 -  71996105 agtagtagtagtagtagtagta-gtagtagta------------gtagtaTTGCCCAGTGCttattataaa
i chlSab2.chr17            I 6 C 0
s manLeu1.NW_012107142v1     398263 46 -    735854 agtagtagtagtagtagCAGCATGCA-------------------------TGCCCAGTGCttattataaa
i manLeu1.NW_012107142v1   I 6 C 0
s colAng1.NW_012115577v1     302318 49 -   1829203 agtagtagtagtggtagtagta----------------------gtagtaTTGCCCAGTGCttattataaa
i colAng1.NW_012115577v1   I 880 C 0
s calJac3.chr4             30500005 37 + 171630274 agt------------agtagta----------------------gtagtaTTGCCCGGTGCTTATTATAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           306554 46 +    515838 AGTAGTCATAGC---AGTAGTA----------------------GTAGTATTGCCCAGTCCTTATTATAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     937376 49 -   1771730 agcactaatagcagtggtagta----------------------gtagtaTTGCCCAGTGCTTATTATAAA
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     224315 47 -   1411461 --TAGTAGTAGTCATGGTAAAA----------------------GTAGTATTGCCAGGTGTTTATTATAAA
i proCoq1.NW_012149775v1   C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e canFam3.chr35            26364672 11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I
e aotNan1.NW_018496901v1     118669 960 -    486031 I

a score=257982.000000
s hg38.chr6_GL000254v2_alt  1518390 31 +   4827813 agttgtatatgctcatggttaagaaaattca
s panTro5.chr6             30387132 31 + 175400573 agttgtatatgctcatggttaagaaaattca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30621441 31 + 173848474 agttgtatatgctcatggttaagaaaattca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     329179 31 +   2037526 agttgtatatgctcatggttaagaaaattca
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30874160 31 + 172585720 agttgtatatgctcatggttaagaaaattca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30163623 31 - 170955103 agttgtatatgctcatggttaagaaaattca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     412436 31 +   1495729 agttgtatatgctcatgggtaagaaaattca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     516292 31 -    863181 agttgtatatgctcatggttaagaaaattca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29663182 31 -  71996105 agttgtatatgctcatggttaagaaaattca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     398309 31 -    735854 agttgtatatgctcatggttaagaaaattca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     302367 31 -   1829203 agttgtatatgctcgtggttaagaaaattca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30500042 31 + 171630274 AGTTGTGTATGCTCATGGTTAAGAAAATTTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           306600 27 +    515838 AGTTGTATATGCTCATGGTT----AAATTTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     937425 31 -   1771730 CGTTTTGTATGCTcatggttaagaaaattta
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     224362 31 -   1411461 AGTATTGTATGCTCATGATTTTAAAAATTCA
i proCoq1.NW_012149775v1   C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e canFam3.chr35            26364672 11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I
e aotNan1.NW_018496901v1     118669 960 -    486031 I
e nomLeu3.chr1a            74995360 1252 + 122973662 M

a score=1910712.000000
s hg38.chr6_GL000254v2_alt  1518421 205 +   4827813 aacattttcaaagtgtataaat-------------aaaaacctctttccccacccactcaacacttccccttgccactccccatagttaaacattgatatcaattttttgtatatcctgcaagttttgaatacaaatatatattgctttc---tcttt------ttttttacataaatTAGATTATGCCATAAGTATTCTTTGCAACCCCT-CCAAAAGAAAAACTAT
s panTro5.chr6             30387163 203 + 175400573 aacattttcaaagtgtataaat-------------aaaaacctctttccccacccactcaacacttccccttgccactccccatagttaatcattgatatcaattttttgtatatcctgcaagtttcgaatacaaatatatattgctttc---tc--t------ttttttacataaatTAGATTATGCCATAAGTATTCTTTGCAACCCCT-CCAAAAGAAAAACTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30621472 203 + 173848474 aacattttcaaagtgtataaat-------------aaaaacctctttccccacccactcaacacttccccttgccactccccatagttaatcattgatatcaattttttgtatatcctgcaagtttcgaatacaaatatatattgctttc---tc--t------ttttttacataaatTAGATTATGCCATAAGTATTCTTTGCAACCCCT-CCAAAAGAAAAACTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     329210 203 +   2037526 aacattttcaaagtgtataaat-------------aaaaacctctttccccacccactcaacacttccccttgccactccccatagttaatcattgatatcaattttttgtacatcctgcaagttttgaatacaaatatatattgctttc---tt--t------ttttttacataaatTAGATTATGCCATAAGTATTCTTTGCAACCCCT-CCAAAAGAAAAACTAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74996612 203 + 122973662 AACATTTTCAAAGTGtatagat-------------aaaaacctctttccccacccactcaacacttccccttgccacttcccatagttaatcattggtatcaattttttgtgtatcctGCAAGTTTTGAATACAAATATACATTGCTTTC---TC--T------TTTTTTATATAAATTAGATTATGCCATAAATATTCTTTGCAACCCCT-CCAAAAGAAAAACTAT
i nomLeu3.chr1a            M 1252 C 0
s rheMac8.chr4             30874191 205 + 172585720 aacattttcaaagtgtacagat-------------aaaaacctctttccccacccactcaacacttccccttgccactccccatagttaatcattgatatcaattttttgtatatcctgcaagctttgaatacacatatacatTGTTTTC---TT--TTTT---TTTTTTACATAAATTAGATTATGCCATAAATACTCTTTGCAACCCCT-CCAAAA-AAAAACTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30163654 206 - 170955103 aacattttcaaagtgtacagat-------------aaaaacctctttccccacccactcaacacttccccttgccactccccatagttaatcattGATATCAATTTTTTGTATATCCTGCAAGCTTTGAATACACATATACATTGTTTTC---TT--TTTT---TTTTTTACATAAATTAGATTATGCCATAAATACTCTTTGCAACCCCT-CCAAAAGAAAAACTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     412467 208 +   1495729 aacattttcaaagtgtacagat-------------agaaacctctttccccacccactcaacacttccccttgccactccccatagttaatcattgatatcaattttttgtatatcctgcaagctttgaatacacatatacatTGTTTTC---TT--TTTTTTCTTTTTTACATAAATTAGATTATGCCATAAATACTCTTTGCAACCCCT-CCAAAA-AAAAACTAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     516323 203 -    863181 aacattttcaaagtgtacagat-------------agaaacctctttccccacccactcaacacttccccttgccactccccatagttaatcattgatatcaattttttgtatatcctGCAAGTCTTGAATACAAATATACATTGTTTTC---TT--T------TTTTTTACATAAATTAGATTATGCCATAAATATTCTTTGCAACCCCT-CCAAAAGAAAAACTAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29663213 204 -  71996105 aacattttcaaagtgtacagat-------------agaaacctctttccccacccactcaacacttccccttgccactccccatagttaatcattgatatcaattttttgtatatcctgcaagttttgaatacaaatatacattgttttc--ttt--t------ttttttacataaattagattatgccataaatactctttgcaACCCCT-CCAAAAGAAAAACTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     398340 203 -    735854 aacattttcaaagtgtacagat-------------agaaacctctttccccacccactcaacacttccccttgccactccccatagttaatcattgatatcaattttttgtatatcctgcaagctttGAATACAAATATACATTGTTTTC---TT--T------TTTTTTGCGTAAATTAGATTATGCCATAAATACTCTTTGCAACCCCT-CCAAAAGAAAAACTAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     302398 202 -   1829203 aacattttcaaagtgtacagat-------------aaaaacctctttccccacccactcaacacttccccttgccactccccatagttaatcattgatatcaattttttgtatatcctgcaagctttGAATACAAATATACATTGTTTTC---TT---------TTTTTTACATAAATTAGATTATGCCATAAATACTCTTTGCAACCCCT-CCAAAGGAAAAACTAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30500073 208 + 171630274 AACATTTTCAAAGTGTATAGAT---------TAAAAAAAACCTATTT-CCCACCCGCTCAACACTTCCTCTTGTCACTCCCCATAGTTAATAATTGATATCAATTTTTTGTATATCCTGCCAGTTTTGAATACAAATTTATATTGCTTTC--TCT--T------TTTTTTACATAAATTAGATTATGCCATAAATACTCTTTGCAACCCCTCCCAAAAGAAAAACTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           306627 218 +    515838 AACATTTTCAAAGTGTATAGATAAAAAAAAAAAAAaaaaaccttttt-cccacccgctcaacacttcc-cctgtcactccccatagttaatcattgatatcaatcttttgtatatcctgccagtctcgaatacaaatatatattgctttcttttt--t------ttttttacataaattagattatgtcataaatactctttgcaACCCCTCCCAAAAGAAAAACAAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     937456 207 -   1771730 aacattttcaaagtgtatagat-----------aaaaaaacctcttt-cccacccgctcaacacttccgcttgtcactccccatagttaatcattgatatcaattttttgtatatcctgccagTTTTGAATACAAATGTATATTGCTTTC-TCTT--T------TTTTTTACATAAATTGGATTATGCCATAAATACTCTTTGCAAACCCTCCCAAAAGAAAAACAAT
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     224393 194 -   1411461 AACATTTTCAGAGTGTATAGAT------------GAAAAACCTCTCTCTTTACCCGCTCAACACTTCTCCTTGCCATTCCTCCTAGTTAATCATTGGTATTAATGTTTTGTGTATCCTGCCAGTTTTGAATGTAAGTATATAT----------TG--C------TTTTTAACATAAATCAGATTGTACCATAAATACTCTTTGCAACC----CCAAAAGAAAAACTAT
i proCoq1.NW_012149775v1   C 0 I 90980
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e canFam3.chr35            26364672  11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I
e aotNan1.NW_018496901v1     118669 960 -    486031 I

a score=456628.000000
s hg38.chr6_GL000254v2_alt  1518626 32 +   4827813 GTGCAACACATGCTAATTGTACcattggtc------------------------------aa
s panTro5.chr6             30387366 60 + 175400573 GTGCAGCACATGCTAATTGTACCATTGGTCAAACGTTACACGAGGCTATAAAGTT--AAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30621675 60 + 173848474 GTGCAGCACATGCTAATTGTACCATTGGTCAAACGTTACACGAGGctataaagtt--aaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     329413 60 +   2037526 GTGCAGCACATGCTAATTGTACCATTGGTCAAACGTTACACGAGGCTATAAAGTT--AAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74996815 61 + 122973662 GTGCAACACATGCTAATTGTAACATGGCTCAAACACTACACAAGGctataaagtt-aaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30874396 62 + 172585720 GTGCGACACATGCTAATTGTAACATTGGTCAAACATTACACAAGGCTATAAAGTTAAAACAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30163860 62 - 170955103 GTGCGACACATGATAATTGTAACATTGGTCAAACATTACACAAGGCTATAAAGTTAAAACAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     412675 62 +   1495729 GTGCGACACATGCTAATTGTAACATTGGTCAAACATTACACAAGGCTATAAAGTTAAAACAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     516526 62 -    863181 GTGCGACACATGCTAATTGTAACATTGGTCAAACATTACACAAGGCTATAAAGTTAAAACAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29663417 62 -  71996105 GTGCGACACATGCTAATTGTGACATTGGTCAAACATTACACAAGGCTATAAAGTTAAAACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     398543 62 -    735854 GTGCGACACATGCTAATTGTAACATTGGTCAAACATTACACAAGGCTATAAAGTTAAAACAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     302600 62 -   1829203 GTGCGACATATGCTAATTGTAACATTGGTCAAACATTACACAAGGCTATAAAGTTAAAACAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30500281 61 + 171630274 GTGCAACACATGGTAATTGTAACGTTGGTCAAACATTACACAAGGctataaagtt-aaaaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           306845 61 +    515838 GTGCAACACATGCTAATTGTAACGTTGGTCAAACAttacacaaggctataaagtt-aaaaaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     937663 62 -   1771730 GTGCAACACATGCTGATTATAATGTTGGTCAAACAttatacaaggctataaagttaaaaaaa
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     315567 32 -   1411461 ATGTAACACATGCCCATTGTAACACTTGTCAA------------------------------
i proCoq1.NW_012149775v1   I 90980 I 49
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e canFam3.chr35            26364672 11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I
e aotNan1.NW_018496901v1     118669 960 -    486031 I

a score=99606.000000
s hg38.chr6_GL000254v2_alt  1518658 16 +   4827813 atttgttttaattata
s panTro5.chr6             30387426 16 + 175400573 ATTTGTTTTAATTAta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30621735 16 + 173848474 atttgttttaattata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     329473 16 +   2037526 ATTTGTTTTAATTtta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74996876 16 + 122973662 atttgttttaattaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30874458 16 + 172585720 ATTTGTTTTAATTAta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30163922 16 - 170955103 ATTTGTTTTAATTAta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     412737 16 +   1495729 ATTTGTTTTAATTAta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     516588 16 -    863181 ATTTGTTTTAATTAta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29663479 16 -  71996105 ATTTGTTTTAATTAta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     398605 16 -    735854 ATTTGTTTTAATTAta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     302662 14 -   1829203 A--TGTTTTAATTAta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30500342 16 + 171630274 actttttaaagtcaca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           306906 16 +    515838 actttttaaattcata
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     937725 16 -   1771730 acttttaaaaatcata
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     315599 49 -   1411461 I
e canFam3.chr35            26364672 11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I
e aotNan1.NW_018496901v1     118669 960 -    486031 I

a score=913025.000000
s hg38.chr6_GL000254v2_alt  1518674 88 +   4827813 tcttcatttgaaccttacaacaagcctgtgaaatacataagacctattttgtttttctcatgtggtggttgagaaaactgacacacag
s panTro5.chr6             30387442 88 + 175400573 tcttcatttgaaccttacaacaagcctgtgaaatacataagacctattttgtttttctcatgtggtggttgagaaaactggcacacag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30621751 88 + 173848474 tcttcatttgaaccttacaacaagcctgtgaaatacataagacctattttgtttttctcatgtggtggttgagaaaactggcacacag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     329489 88 +   2037526 tcttcatttgaaccttacaacaagcctgtgaaatacctaagacctattttgtttttctcatttggtggttgagaaaactggcacacag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74996892 88 + 122973662 tcttcatttgaaccttacaagaagcctgtgaaatacataagacctattttgtttttctcatttggtggttgagaaaactggcacacag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30874474 88 + 172585720 tcttcatttgaaccttacaacaagcctgtgaaatacataagacctattttgtttttctcatttggtggttgagaaaactggcacacag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30163938 88 - 170955103 tcttcatttgaaccttacaacaagcctgtgaaatacataagacctattttgtttttctcatttggtggttgagaaaactggcacacag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     412753 88 +   1495729 tcttcatttgaaccttacaacaagcctgtgaaatacataagacctattttgtttttctcatttggtggttgagaaaactggcacacag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     516604 88 -    863181 tcttcatttaaaccttacaacaagcctgtgaaatacataagacctattttgttcttctcatttggtggttgagaaaactggcacacag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29663495 88 -  71996105 tcttcatttgaaccttacaacaagcctgtgaaatacataagacctattttgtttttctcatttggtggttgagaaaactggcacacag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     398621 88 -    735854 tcttcatttgaaccttacaacaagcctgtgaaatacataagacctattttgtttttctcatttggtggttgagaaaactggcacacag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     302676 88 -   1829203 tcttcatttgaacattacaacaagcctgtgaaatacataagacctattttgtttttctcatttggtggttgagaaaactggcacacag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30500358 88 + 171630274 tcttcatttgaaccttacaagaagcctgggaactacataacccctattttgtttttgtcattcagtggttgagaaaactggcacacag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           306922 88 +    515838 tctgcatttgaaccttacaacaagcctgtgaactacataagacctattttgtttttctcatttggtggttgagaaaactggcacacat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     937741 88 -   1771730 tcttcatttgaaccttacaacaagcctgtgaactacataagacctattttgtttttctcattcggtggttgagaaaactggcacacag
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     315648 88 -   1411461 tctttatttgaaccttgtaacaaatctgtgaaatacataggacttattttgtttttcttattctgtgactgagaaaactggcacacag
i proCoq1.NW_012149775v1   I 49 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e canFam3.chr35            26364672 11 +  26524999 I
e otoGar3.GL873550           349789 1876 +  18854210 I
e aotNan1.NW_018496901v1     118669 960 -    486031 I

a score=803867.000000
s hg38.chr6_GL000254v2_alt  1518762 82 +   4827813 ttaaatgaacttgtctaacaattttcacagctggtccttgtgacctgctgaagtagaatctacctgtcctggag--------ctcagtgc
s panTro5.chr6             30387530 82 + 175400573 ttaaatgaatttgtctaacaattttcacagctggtCCTTGTGACCTGCTGAAGTAGAATCTACCTGTCCTGGAG--------CTCAGTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30621839 82 + 173848474 ttaaatgaatttgtctaacaattttcacagctggtccttgtgacctgctgaagtagaatctacctgtcctggag--------ctcagtgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     329577 82 +   2037526 ttaaatgaacttgtctaacaattttcacagctggtCCTTGTGACCTGCTGAAGTAGAATCTACCTGTCCTGGAG--------CTCAGTGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74996980 82 + 122973662 ttaaatgaacttgtctaacaagtttcacagctggtccttgtgacctgctgaagtagaatctacccatcctggag--------ctcagtgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30874562 81 + 172585720 -taaatgaacttgtctaacaagtttcacagctggtCCTTGTGACCTGCTGAAGTAGAATCTACCCGTCCTGGAG--------CTCAGCGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30164026 81 - 170955103 -taaatgaacttgtctaacaagtttcacagctggtCCTTGTGACCTGCTGAAGTAGAATCTACCCGTCCTGGAG--------CTCAGCGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     412841 81 +   1495729 -taaatgaacttgtctaacaagtttcacagctggtccttgtgacctgctgaaatagaatctacccgtcctggag--------ctcagtgc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     516692 82 -    863181 ttaaatgaacttgtctaacaagtttcacagctggtccttgtgacctgctgaaatagaatctacccgtcctggag--------ctcagtgc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29663583 82 -  71996105 ttaaatgaacttgtctaacaagtttcacagctggtccttgtgacctgctgaagtagaatctacccgtcctggag--------ctcagcgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     398709 82 -    735854 ttaaatgaacttgtctaacaagtttcacagctggtccttgtgacctgctgaagtagaatctacccgtcctggag--------ctcagcgc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     302764 82 -   1829203 ttaaatgaacttgtctaacaagtttcacagctggtCCTTGTGACCTGCTGAAGTAGAATCTACCCGTCCTGGAG--------CTCAGCGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30500446 90 + 171630274 ttaaatgaacttgtctaaccagtttcacagctggtGCTTGTGACCTGCTAAAGTAGAACCTACCAGTCCTGGAGTTCAGCACCTCAGTGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           307010 90 +    515838 ttaaatgaacccgtctaaccagtttctcagctggtgcttgtgacctgctgaagtagaacttaccggtcctggagctcagcaactcagtgc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     937829 90 -   1771730 ttaaatgaacttgtctaaccagtttcacagctggtgcttgtgacctgctgaagtagaacctaccggtcctggagctcagcacctcagtgc
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     315736 82 -   1411461 ttaaatgaacttatctaacaagtttgacagctggtCCTTGTAACCCGCTGAAGTGGAATCTATAGGTCCTGGTG--------CTCAGTGC
i proCoq1.NW_012149775v1   C 0 I 166
s otoGar3.GL873550           351665 53 +  18854210 ttaattcaacttgtctggtaa---tg-----tggtctttg---------------------agagactcctggg--------cataacaC
i otoGar3.GL873550         I 1876 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e canFam3.chr35            26364672 11 +  26524999 I
e aotNan1.NW_018496901v1     118669 960 -    486031 I

a score=453460.000000
s hg38.chr6_GL000254v2_alt  1518844 46 +   4827813 agtcacatttccaccacactcagactTCTAAAACAGACACATCCCA
s panTro5.chr6             30387612 46 + 175400573 AGTCACATTTCCACCACACTCAGACTTCTAGAACAGACACATCCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30621921 46 + 173848474 agtcacatttccaccacactcagactTCTAGAACAGACACATCCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     329659 46 +   2037526 AGTCACATTTCCACCACACTCAGACTTCTAAAACAGACACATCCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74997062 46 + 122973662 agtcacctttccgccacactcagactTCTAAAACAGACACATCCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30874643 46 + 172585720 AGTCACCTTTCCACCACACTCAGACATCTAAAACAGACACATCCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30164107 46 - 170955103 AGTCACCTTTCCACCACACTCAGACATCTAAAACAGACACATCCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     412922 46 +   1495729 agtcacctttccaccacacTCAGACATCTAAAACAGACACATCCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     516774 46 -    863181 agtcacctttccaccacacTCAGACATCTAAAACAGACACATCCCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29663665 46 -  71996105 agtcacctttccaccacactcagactTCTAAAACAGACACATCCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     398791 46 -    735854 agtcacctttccaccacactcagactTCTAAAACAGACACATCCCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     302846 46 -   1829203 AGTCACCTTTCCACCACACTCAGACTTCTAAAACAGACACATCCCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30500536 46 + 171630274 AGTCACCTTCCCACCACACTCAGGCTTCTGAAACAGACAGATCCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           307100 46 +    515838 agtcaccttctaaccacactCAGGCTCCTGAAACAGACAGATCCCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     937919 46 -   1771730 agtcaccttcccaCCACACTCAGGCTTCTGAAACAGACAGATCCCA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           351718 46 +  18854210 AGTGACCTTTCCACCATGCTCAGACTTCCCAAACAAACAGATCCCA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     315818 166 -   1411461 I
e canFam3.chr35            26364672 11 +  26524999 I
e aotNan1.NW_018496901v1     118669 960 -    486031 I

a score=741322.000000
s hg38.chr6_GL000254v2_alt  1518890 74 +   4827813 ATGGGGCTATGTTTCATTTGCTACCCATTGAATTCATGTTTT----AGACAGGGCA------------------TTTTTGGTTTCATATGAAACAG
s panTro5.chr6             30387658 74 + 175400573 ATGGGGCTTTGTTTCATTTGCTACCCATTGAATTCATGTTTT----AGACAGGGCA------------------TTTTTGGTTTCATATGAAACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30621967 74 + 173848474 ATGGGGCTTTGTTTCATTTGCTACCCATTGAATTCATGTTTT----AGACAGGGCA------------------TTTTTGGTTTCATATGAAACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     329705 74 +   2037526 ATGGGGCTTTGTTTCATTTGCTACCCATTGAATTCATGTTTT----AGACAGGGCA------------------TTTTTGGTTTCATATGaaacag
i gorGor5.CYUI01015528v1   C 0 I 2
s nomLeu3.chr1a            74997108 78 + 122973662 ATGGGGCTTTGTTTCATTTGCTACCCATTGAATTCATGTTTTAGACAGACAGGGCA------------------TTTTTGGTTCCGTATGAAACAG
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             30874689 78 + 172585720 AAGGGGCTTTGTTTCATTTGTTACCCACTGAATTCATGTTTTAGACAGACAGGGCA------------------TTTTTGGTTCCGTATGaaacag
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             30164153 78 - 170955103 AAGGGGCTTTGTTTCATTTGTTACCCACTGAATTCATGTTTTAGACAGACAGGGCA------------------TTTTTGGTTCCGTATGaaacag
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     412968 78 +   1495729 AAGGGGCTTTGTTTCATTTGCTACCCACTGCATTCATGTTTTAGACAGACAGGGCA------------------TTTTTGGTTCCGTATGAAACAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     516820 78 -    863181 AAGGGGCTTTGTTTCATTTGCTACCCACTGAATTCATGTTTTAGACAGACAGGGCA------------------TTTTTGGTTCCGTATGAAACag
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29663711 78 -  71996105 AAGGGGCTTTGTTTCATTTGCTACCCACTGAATTCATGTTTTAGACAGACATGACA------------------TTTTTGGTTCCATATGAAACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     398837 78 -    735854 AAGGGGCTTTGTTTCATTTGCTACCCACTGAATTCACGTTTTAGACAGACAGGGCA------------------TTTTTGGTTCCGTATgaaacag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     302892 78 -   1829203 ATGGGGCTTTGTTTCATTTGCTACCCATTGAATTCATGTTTTAGACAGACAGGGCA------------------TTTTTGGTTCCATATGAAACAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30500582 78 + 171630274 ATGGGGCTTTGTTTCATTTGCTACCCACTGAATTCATGTTTTAGACAGACAGGGCA------------------TTTTTAGTTCCATATGAAACAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           307146 74 +    515838 ATGCGGCTTTGTTTCATTTGCTACCCATTGAATTCATGTTTT----AGACAGGGCA------------------TTTTTAGTTCTGTATGAAACAG
i saiBol1.JH378341         C 0 I 11
s cebCap1.NW_016107755v1     937965 74 -   1771730 ATGGGGCTTTGTTTCGTTTGCTACCCATTGAATTCATGTTTT----AGACAGGGCA------------------TTTTTAGTTCCGTATGaaacaa
i cebCap1.NW_016107755v1   C 0 I 3
s otoGar3.GL873550           351764 78 +  18854210 GTGGGGCTTTGTTTTGTTTACTACCCATTTAACTGATGTTTGAGACCACCTGGGCT------------------TTTTCAGGTGAGCATGAAATAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26364683 91 +  26524999 ATGGGG-TTTGTTTTGCTTCCTGTGCACTGACTTAGTGTTTT----GGACAAGCCAGatttatttattttttatttttGGGTTGAGTATGAAATAG
i canFam3.chr35            I 11 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     315818 166 -   1411461 I
e aotNan1.NW_018496901v1     118669 960 -    486031 I

a score=270397.000000
s hg38.chr6_GL000254v2_alt  1518964 32 +   4827813 AAAAAAAAAAA------AAGAACCGATAAACCATAAGC
s panTro5.chr6             30387732 31 + 175400573 -AAAAAAAAAA------AAGAACCAATGAACCATAAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30622041 31 + 173848474 -AAAAAAAAAA------AAGAACCAATGAACCATAAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     329781 32 +   2037526 aaaaaaaaaaa------aagaaCCGATGAACCATAAGC
i gorGor5.CYUI01015528v1   I 2 C 0
s nomLeu3.chr1a            74997187 32 + 122973662 AAAAAAAAAAA------AAGAACCGATGAACCACAAGC
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30874768 38 + 172585720 aaaaaaaaaaaaagaagaagaaCCGATGAACCATAAGC
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30164232 38 - 170955103 aaaaaaaaaaaaagaagaagaaCCGATGAACCATAAGC
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     413046 38 +   1495729 AAAAAAAAAAAAAGAAGAAGAACCGATGAACCACAAGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     516899 38 -    863181 aaaaaaaaaagaagaagaagaaCCGATGAACCATAAGC
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29663789 35 -  71996105 AAAAACAAAAA---AAGAAGAACCGATGAACCATAAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     398915 38 -    735854 aaaaaaaaaaaaagaagaagaaCCGATGAACCATAAGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     302970 29 -   1829203 AAAAAAAA---------AAGACCCAATGAACCATAAGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30500660 28 + 171630274 ----AAAAAAA------AAGAACCAGTGAACCATAAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           307231 32 +    515838 aaaaaaaaaaa------aagaaCCAATGAACCATAAGC
i saiBol1.JH378341         I 11 C 0
s cebCap1.NW_016107755v1     938042 32 -   1771730 aaaaaaaaaaa------aagaaCCAATGAACCATAAGC
i cebCap1.NW_016107755v1   I 3 C 0
s aotNan1.NW_018496901v1     119629 32 -    486031 AAAAAAAAAAA------AAGAATCAATGAACCAGAAGC
i aotNan1.NW_018496901v1   I 960 C 0
s otoGar3.GL873550           351842 22 +  18854210 ----------------ACAAAACAAATGAACAGTAAGT
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26364774 20 +  26524999 ----------------AAAAAACAAATGAACCTCTT--
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     315818 166 -   1411461 I

a score=1191925.000000
s hg38.chr6_GL000254v2_alt  1518996  87 +   4827813 ACACTGTATTTCCAAGTCTCTGGTACTTCTAATTTTA----GAG---------------TGGTCCAGATAATTTAAAAGTGTGGATATGCACATTTGGAGGCTTTG
s panTro5.chr6             30387763  87 + 175400573 ACACTGTATTTCCAAGTCTCTGGTACTTCTAATTTTA----GAG---------------TGGTCCAGATAATTTAAAAGTGTGGATATGCACATTTGGAGGCTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30622072  87 + 173848474 ACACTGTATTTCCAAGTCTCTGGTACTTCTAATTTTA----GAG---------------TGGTCCAGATAATTTAAAAGTGTGGATATGCACATTTGGAGGCTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     329813  87 +   2037526 ACACTGTATTTCCAAGTCTCTGGTACTTCTAATTTTA----GAG---------------TGGTCCAGATAATTTAAAAGTGTGGATATGCACATTTGGAGGCTTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74997219  87 + 122973662 ACACTGTATTTCCAGGTCTCTGGTACTTCTAATTTTA----GAG---------------TGGTCCAGATAATTGAAAAGTGTGGATATGCACATTTGGAGGCTTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30874806  87 + 172585720 ACACTGTATTTCCAAGTCTCTGGTACTTCTAATTTTT----GAG---------------TGGTCCAGATAATTTAAAAGTGTGGATATGCACATTTGGAGGCTCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30164270  87 - 170955103 ACACTGTATTTCCAAGTCTCTGGTACTTCTAATTTTT----GAG---------------TGGTCCAGATAATTTAAAAGTGTGGATATGCACATTTGGAGGCTCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     413084  87 +   1495729 ACACTGTATTTCCAAGTCTCTGGTACTTCTAATTTTA----GAG---------------TGGTCCAGATAATTTAAAAGTGTGGATATGCACATTTGGAGGCTCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     516937  87 -    863181 ACACTGTATTTCCAAGTCTCTGGTACTTCTAATTTTA----GAG---------------TGGTCCAGATAATTTAAAAGTGTGGATATGCACATTTGGAGGCTCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29663824  87 -  71996105 ACACTGTATTTCCAAGTCTCTGGTACTTCTAATTTTA----GAG---------------TGGTCCAGATAATTTAAAAGTGTGGATATGCACATTTGGAGGCTCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     398953  87 -    735854 ACAGTGTATTTCCAAGTCTCTGGTACTTCTAATTTTA----GAG---------------TGGTCCAGATAATTTAAAAGTGTGGATATGCACATTTGGAGGCTCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     302999  87 -   1829203 ACACTGTATTTCCAAGTCTCTGGTACTTCTAATTTTA----GAG---------------TGGTCCAGATAATTTAAAAGTGTGGATATGTACATTTGGAGGCTCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30500688  87 + 171630274 ACACTGTATTTCCAGGTCTCTGGTACTTCTAATGTTA----GAG---------------TGGTCCCGATAATTTAAAAGTGTGGATATGCACATTTGGAGGCTCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           307263  87 +    515838 ACACTGTATTTCCAGGTCTCTGGTACTTCTAATTTTA----GAG---------------TGGTCCTGATAATTTAGAAGTGTGGATATGCACATTTGGAGGCTCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     938074  87 -   1771730 ACACTGTATTTCCAGGTCTCTGGTACTTCTAATTTTA----GAG---------------TGGTCCCGATAATTTTAAAATGCGGATATGCACATTTGGAGGCTCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     119661  87 -    486031 ACACTGTATTTCCAGGTCTCTGGTACTTCTAATTTTA----GAG---------------TGGTCCTGATAATTTAAAAGTGTGGATATGCACATCTGGAGACTCTG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     315984  87 -   1411461 ACACTGTATTTCCAGGTCTCTGGTACTTCTAATTTTA----CAG---------------CGGTCCACATAATTTACGAATGTGGATATCCACATTTGGAAGCTCCG
i proCoq1.NW_012149775v1   I 166 C 0
s otoGar3.GL873550           351865 102 +  18854210 ACAACATATTTCCAGGTCTCTGGTACTTCTAATTTTA----CAGATAATGTAAAATATCTGGTACAGATAATGTAGGAGTATGGATATGCACATTTGGAAGTTCTG
i otoGar3.GL873550         I 1 I 167
s canFam3.chr35            26364794  88 +  26524999 ATGCTGTATTTCCAAGCCTCTGGAATGACTAAATTTAGGGTGAG---------------TGGCCCAGGTACTTTAGGGGTGTGGAAATGCAGATATGGAGGCT---
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I

a score=195487.000000
s hg38.chr6_GL000254v2_alt  1519083 18 +   4827813 TGCCTATATTAA--TAAATT
s panTro5.chr6             30387850 18 + 175400573 TGCCTACATTAA--TAAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30622159 18 + 173848474 TGCCTACATTAA--TAAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     329900 18 +   2037526 TGCCTATATTAA--TAAATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74997306 18 + 122973662 TGCCTATATTAA--TAAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30874893 18 + 172585720 TGCCTATATTAA--TAAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30164357 18 - 170955103 TGCCTATATTAA--TAAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     413171 18 +   1495729 TGCCTATATTAA--TAAATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     517024 18 -    863181 TGCCTATATTAA--TAAATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29663911 18 -  71996105 TGCCTATATTAA--TAAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     399040 18 -    735854 TGCCTATATTAA--TAAATT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     303086 18 -   1829203 TGCCTATATTAA--TAAATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30500775 18 + 171630274 TGACTATATTAA--TAAATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           307350 18 +    515838 TGACTATATTAA--TAAATT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     938161 18 -   1771730 CGACTATATTAA--TAAATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     119748 18 -    486031 TGACTATATTAA--TAAATT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     316071 15 -   1411461 TTCCCAAAT-----TGAATT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           352134 15 +  18854210 tgtctctat-----taattt
i otoGar3.GL873550         I 167 I 138
s canFam3.chr35            26364882 18 +  26524999 --CCTGGACAAAGTTAAATT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I

a score=317711.000000
s hg38.chr6_GL000254v2_alt  1519101 24 +   4827813 GTTCTGCATAA------------------GAAAGGAAAGAGA
s panTro5.chr6             30387868 24 + 175400573 GTTCTGCATAA------------------GAAAGGAAAGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30622177 24 + 173848474 GTTCTGCATAA------------------GAAAGGAAAGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     329918 24 +   2037526 GTTCTGCATAA------------------GAAAGGAAAGACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74997324 24 + 122973662 GTTCTGCATAA------------------GAAAGGAAAGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30874911 24 + 172585720 GTTCTGCATAA------------------GAAAGGAAAGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30164375 24 - 170955103 GTTCTGCATAA------------------GAAAGGAAAGAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     413189 24 +   1495729 GTTCTGCATAA------------------GAAAGGAAAGAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     517042 24 -    863181 GTTCTGCATAA------------------GAAAGGAAAGAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29663929 24 -  71996105 GTTCTGCATAA------------------GAAAGGAAAGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     399058 24 -    735854 GTTCTGCATAA------------------GAAAGGAAAGAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     303104 24 -   1829203 GTTCTGCATAA------------------GAAAGGAAAGAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30500793 24 + 171630274 GTTCTGCATAA------------------GAAAGAAAAGAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           307368 24 +    515838 GTTCTGCATAA------------------GAAAGGAAAGAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     938179 24 -   1771730 GTTCTGCATAA------------------GAAAGAAAAGAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     119766 24 -    486031 GTTCTGCATAA------------------GAAAGAAAAGAGA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     316086 24 -   1411461 GCTCTGCCTAA------------------GAAAGAAAAGAGA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           352287 42 +  18854210 attctgcctcaaaaataaataaataaaggaaaagaaaaGAGA
i otoGar3.GL873550         I 138 C 0
s canFam3.chr35            26364900 24 +  26524999 GCCATGTATAA------------------AAAAGAAAATGGA
i canFam3.chr35            C 0 I 216
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I

a score=148501.000000
s hg38.chr6_GL000254v2_alt  1519125 10 +   4827813 AATTTAGAAG
s panTro5.chr6             30387892 10 + 175400573 AATTTAGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30622201 10 + 173848474 AATTTAGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     329942 10 +   2037526 AATTTAGAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74997348 10 + 122973662 AATTTAGAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30874935 10 + 172585720 AATTTAGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30164399 10 - 170955103 AATTTAGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     413213 10 +   1495729 AATTCAGAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     517066 10 -    863181 AATTTAGAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29663953 10 -  71996105 AATTTAGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     399082 10 -    735854 AATTCAGAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     303128 10 -   1829203 AATTTAGAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30500817 10 + 171630274 AATTTAGAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           307392 10 +    515838 AATTTAGAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     938203 10 -   1771730 AATTTAGAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     119790 10 -    486031 AATTTAGAAG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     316110 10 -   1411461 AATTTAGAAG
i proCoq1.NW_012149775v1   C 0 I 1215
s otoGar3.GL873550           352329 10 +  18854210 AATGTAGAAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26365140 10 +  26524999 AATTTAAAAG
i canFam3.chr35            I 216 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I

a score=2243478.000000
s hg38.chr6_GL000254v2_alt  1519135 210 +   4827813 ---CCAAAAG---AAATTTGGGAGTGGCTAA-------------------------------GACC--------TCAGGGTGAGGACTGAGAGCTGCCTGAAGGAAAAGCAGAGGAAAATTATTCATTTGGTGGTCCAGCTGGAGCCACAGGATGG---CTGTGTTCCTGTGTTTGTGATGTAAAACTGTCCTCTATCTCCCCTACAGGATCCTCTGCACAACCTGCCTTGCCCCTAATGCTTTTTGTAGGTGTTCCT---------
s panTro5.chr6             30387902 210 + 175400573 ---CCAAAAG---AAATTTGGGAGTGGCTAA-------------------------------GACC--------TCAGGGTGAGGACTGAGAGCTGCCTGAAGGAAAAGCAGAGGAAAACGATTCATTTGGTGGTCCAGCTGGAGCCGCAGGATGG---CTGTGTTCCTGTGTTTGTGATGTAAAACTGTCCTCTATCTCCCCTACAGGATCCTCTGCACAACCTGTCTTGCCCCTAAAGCTTTTTGTAGGTGTTCCT---------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30622211 210 + 173848474 ---CCAAAAG---AAATTTGGGAGTGGCTAA-------------------------------GACC--------TCAGGGTGAGGACTGAGAGCTGCCTGAAGGAAAAGCAGAGGAAAACGATTCATTTGGTGGTCCAGCTGGAGCCGCAGGATGG---CTGTGTTCCTGTGTTTGTGATGTAAAACTGTCCTCTATCTCCCCTACAGGATCCTCTGCACAACCTGTCTTGCCCCTAAAGCTTTTTGTAGGTGTTCCT---------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     329952 210 +   2037526 ---CCAAAAG---AAATTTGGGAGTGGCTAA-------------------------------GACC--------TCAGGGTGAGGACTGAGAGCTGCCTAAAGGAAAAGCAGAGGAAAACGATTCATTTGGTGGTCCAGCTGGAGCTGCAGGATGG---CTGTGTTCCTGTGTTTGTGATGTAAAACTGTCCTCTATCTCCCCTACAGGATCCTCTGCACAACCTGTCTTGCCCCTAATGCTTTTTGTAGGTGTTCCT---------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74997358 209 + 122973662 ---CCAAAAG---AAATTTGGGAGTGGCTAA-------------------------------GACC--------TCAGGGTGAGGACTGAGAGCTGCCTGAAGGAAAAGCAGAGGAAAATGATTCATTTGGTGGTCCAGCTGGAGCCGCAGGATGG---CTGTCTTCCTGTGTTTGTGATGTAAAACTGTCCTCTATCTCCCCTACAGGATCCTCCACACAACCTATCTTGCCCCTAATGCTTTTT-TAAGTGTTCCT---------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30874945 210 + 172585720 ---CCAAAAG---AAATTTGGGAGTGGCTAA-------------------------------GACC--------TCAGGGTGAGGACTGGGAGCTGCCTGAAGGAAAAGCAGAGGAAATTGATTCAGTTGGTGGTCCAGCTGGAGCCGCAGGAGGG---CTGTGTTCTTGTGTTTGTGATGTAAAACTGTCCTCTATCTCCCCTACAGGATCCTCCACACAACCTATCTTGCCCCTAATGCTTTTTGTAAGTGTTCCT---------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30164409 210 - 170955103 ---CCAAAAG---AAATTTGGGAGTGGCTAA-------------------------------GACC--------TCAGGGTGAGGACTGGGAGCTGCCTGAAGGAAAAGCAGAGGAAATTGATTCATTTGGTGGTCCAGCTGGAGCCGCAGGAGGG---CTGTGTTCTTGTGTTTGTGATGTAAAACTGTCCTCTATCTCCCCTACAGGATCCTCCACACAACCTATCTTGCCCCTAGTGCTTTTTGTAAGTGTTCCT---------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     413223 210 +   1495729 ---CCAAAAG---AAATTTAGGAGTGGCTAA-------------------------------GACC--------TCAGGGTGAGGACTGGGAGCTGCCTGAAGGAAAAGCAGAGGAAATGGATTCATTTGGTGGTCCAGCTGGAGCCGCAGGAGGG---CTGTGTTCCTGTGTTTGTGATGTAAAACTGTCCTCTATCTCCCCTACAGGATCCTCCGCACAACCTATCTTGCCCCTAGTGCTTTTTGTAAGTGTTCCT---------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     517076 210 -    863181 ---CCAAAAG---AAATTTGGGAGTGGCTAA-------------------------------GACC--------TCAGGGTGAGGACTGGGAGCTGCCTGAAGGAAAAGCAGAGGAAATGGATTCATTTGGTGGTCCAGCTGGAGCCGCAGGAGGG---CTGTGTTCCTGTGTTTGTGATGTAAAACTGTCCTCTATCTCCCCTACAGGATCCTCCGCATAACCTGTCTTGCCCCTAGTGCTTTTTGTAAGTGTTCCT---------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29663963 210 -  71996105 ---CCAAAAG---AAACTTGGGAGTGGCTAA-------------------------------GACC--------TCAGGGTGAGGACTGGGAGCTGCCTGAAGGAAAAGCAGAGGAAATTGATTCATTTGGTGGTCCAGCTGGAGCCGCAGGAGGG---CTGTGTTCCTGTGTTTGTAATGTAAAACTGTCCTCTATCTCCCCTACAGGATCCTCCGCATAACCTATCTTGCCCCTAATGCTTTTTGTAAGTGTTCCT---------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     399092 210 -    735854 ---CCAAAAG---AAATTTGGGAGTGGCTAA-------------------------------GACC--------TCAGGGTGAGGACTGGGAGCTGCCTGAAGGAAAAGCAGAGGAAAGAGATTCATTTGGTGGTCCAGCTGGAGCCGCAGGAGGG---CTGTGTTCCTGTGTTTGTGATGTAAAACTGTCCTCTATCTCCCCTACAGGATCCTCCGCACAACCTATCTTGCCCCTAGTGCTTTTTGTAAGTGTTCCT---------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     303138 241 -   1829203 ---CCAAAAG---AAATTTGAGAGTGGCTAAGACCTCAGGATGAGGACTGGGAGCTGCCTAAGACC--------TCAGGATGAGGACTGGGAGCTGCCTGAAGGAAAAGCAGAGGAAATTGATTCATTTGGTGGTCCAGCTGGAGCCGCCGGAGGG---CTGTGTTCCTGTGTTTGTGATGTAAAACTATCCTCTATCTCCCCTACAGGATCCTCTGCACAACCTGTCTTGCCCCTAATGCTTTTTGTAAGTGTTCCT---------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30500827 209 + 171630274 ---CCAAAGG---AGGTTTGGGAGTGGCTAA-------------------------------GACC--------ACAGGGTGAGGACTGGGAGCTGTCAGAAGGAAAAGCAGAGGAAAATGATCCATTTGGTGGTCCAACTGGAG-TGGAGGATAG---CTGTGCTGCAGTGTTTGTGATGTAAAACTGTCCTTTATCTCCCCTACAGGATCCTCAGCACAACCTATCTTGCCCCTAATGCTTTTTATAAGTGTTTCT---------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           307402 209 +    515838 ---CCAAAGG---AGGTTTGGGAGTGGCTAA-------------------------------GACC--------ACAGGGTGAGGTCTGGGAGCTGTCTGAAGGAAAAGCAGAGGAAAATGATCCATTTGGTGGTCCAGCTGGAG-TGGAGAATAG---CTGTGCTGCAGTGTTTGTGATGTAAAACTGTCCTTTATCTCCCCTACAGGATCCCCAGCACAACCTATCTTGCCCCTAATGCTTTTTGTAAGTGTTCCT---------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     938213 209 -   1771730 ---CCAAAGG---AGGTTTGGGAGTGGCTAA-------------------------------GACC--------ACAGGATGAGGCCTGGGAGCTGTCTGAAGGAAAAGCAGAGGAAAATGATCCATTTGGTGGTCCAGCTGCAG-TGGAGGATAG---CTACGCTGCAGTGTTTATGATGTAAAACTGTCCTTCATCTCCCCTGCAGGATCCTCAGCACAACCTATCTTGCCCCTAATGCTTTTTGTAAGTGTTCCT---------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     119800 209 -    486031 ---CCAAAGG---AGGTTTGGGAGTGGCTAA-------------------------------GACC--------ACAGGGTGAGGACTGGGAGCTGTCAGAAGGAAAAGCAGAGGAAAATGATCCATTTGGTGGTCCAGCTGGAA-TGGAGGATAG---CTGTGCTGCAGCGTTTGTGATATAAAACTGTCCTTTATCTCCCATACAGGATCCTCAGCACAACCCATCTTGCCCCTAATGCTTTTTTAAAGTGTTCCT---------
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           352339 196 +  18854210 ---CCTAAGGGGAAGGTTTAGAAATAGCTAA-------------------------------GACCCTATGGTGCCAGGATGAGAACAGGGAGCTGCCTAGAAGAAAAGCAGAAGAGAAGAATCCATTTGGTGGCACAGCCGGAGTCTAAA--------------------------GATGTAAAACCAGGCTCTATCTCCCCTACAGGATCCTCAATCCAACTTCCATTTCTTTTAATG--TTTTGTAAGCATTGCT---------
i otoGar3.GL873550         C 0 I 19402
s canFam3.chr35            26365150 212 +  26524999 CTTATGAAGA---AGGTTTAGGCATAGCCAA-------------------------------TGCC--------CAAATCTGAGGACTAGAAGCTGTCTG-----------GAGGGAAATAATCCACTTGATGGCACTGCAGGGGCAATGTGAAAATCTTTGTGTTGCAGTGTTTGTGATGTCAAACCAGTCTTTATCTCAAGCATGGGAGCCTCAGCTCCATGTACCTGGGGGTCAAG--CTTTCGTAAGCATAGCTGGTGTTGGG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     316120 1215 -   1411461 I

a score=75863.000000
s hg38.chr6_GL000254v2_alt  1519345 8 +   4827813 GAATTCCA
s panTro5.chr6             30388112 8 + 175400573 GAATTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30622421 8 + 173848474 GAATTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     330162 8 +   2037526 GAATTCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74997567 8 + 122973662 GAGTTCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30875155 6 + 172585720 --GTTCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30164619 6 - 170955103 --GTTCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     413433 6 +   1495729 --GTTCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     517286 8 -    863181 GAGTTCCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29664173 8 -  71996105 GAGTTCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     399302 8 -    735854 GAGTTCCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     303379 8 -   1829203 GAGTTCCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30501036 8 + 171630274 GAGTTCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           307611 8 +    515838 GAGTTCCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     938422 8 -   1771730 GAGTTCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     120009 8 -    486031 GAGTTCCA
i aotNan1.NW_018496901v1   C 0 C 0
s canFam3.chr35            26365362 8 +  26524999 GAATGTGA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     316120 1215 -   1411461 I
e otoGar3.GL873550           352535 19402 +  18854210 I

a score=616554.000000
s hg38.chr6_GL000254v2_alt  1519353 51 +   4827813 -AGTGCTGAGTTCTGTCCACTACTGGGCAGGAGGC--A-AAGAGATCCCACAAAA
s panTro5.chr6             30388120 51 + 175400573 -AGTGCTGAGTTCTGTCCACTACTGGGCAGGAGGC--A-AAGAGATCCCACAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30622429 51 + 173848474 -AGTGCTGAGTTCTGTCCACTACTGGGCAGGAGGC--A-AAGAGATCCCACAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     330170 51 +   2037526 -AGTGCTGAGTTCTGTCCACTACTGGGCAGGAGGC--A-AAGAGATCCCACAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74997575 51 + 122973662 -AGTGCTGAGTTCTGTCCACTACTGGGCAGGGGGC--A-AAGAGACCCCACAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30875161 51 + 172585720 -GGTGCTGAGTTCTGTCCACTACTGGGCAGGAGGA--A-AAGAGACCCCACGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30164625 51 - 170955103 -GGTGCTGAGTTCTGTCCACTACTGGGCAGGAGGA--A-AAGAGACCCCACGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     413439 51 +   1495729 -GGTGCTGAGTTCAGTCCACTACTGGGCAGGAGGA--A-AAGAGACCCCACGAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     517294 51 -    863181 -GGTGCTGAGTTCTGTCCACTACTGGGCAGGAGGA--A-AAGAGACCCCACGAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29664181 51 -  71996105 -GGTGCTGAGTTCTGTCCACTATTGGGCAGGAGGA--A-AAGAGACCCCACGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     399310 51 -    735854 -GGTGCTGAGTTCTGTCCACTACTGGGCGGGAGGA--A-AAGAGACCCCACGAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     303387 51 -   1829203 -GGTGCTGAGTTCTGTCCACTACTGGGCAGGAGGA--A-AAGAGACCCCATGAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30501044 51 + 171630274 -AGTGCTGAGTTCTGTCCACTACTAGGCAGGAGGC--A-AAGAGACCCCGCAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           307619 51 +    515838 -AGTGCTGAGTTCTGTCCACTACTGGGCAGGAGGC--A-AAGAGACCCCACAAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     938430 51 -   1771730 -GGTGCTGAGTTCTGTCCACTACTGGGCAGGAGGC--A-AAGAGGCCCCACAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     120017 51 -    486031 -AGTTCTGAGTTCTGTCCACTACTGGGCAGGAGGC--A-AAGAGACCCCACAAAA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     317335 53 -   1411461 -AGTGCCGAGTTCTGTCCACTAGTAGGCAGGAGACAAA-AAGAGACCCCACAAAA
i proCoq1.NW_012149775v1   I 1215 I 63854
s canFam3.chr35            26365370 53 +  26524999 GCATGCTGAGCTGTGTCTGCCTCAGGCCAGAGGCA--AGAAGAGATTCCACAAAA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e otoGar3.GL873550           352535 19402 +  18854210 I

a score=4893177.000000
s hg38.chr6_GL000254v2_alt  1519404 474 +   4827813 TAATTGCTGGGCTGCTGGACTATGTGAGGAGCAGTCACACTG----ATGTGCCTCGGAGAACCAGAGGGGTTATTGTAAGGACCAAGGTGGGACCTATAAGGGAATCTCTCTGGAGCCCAGGAACCGTGATGACAGTGAGCTGGTTGTAATGGGAACTAGAGCCTAGGCAGATGCATTGTCTCTCTGGTCGGCTTACTTTGCTCTGGATGTGGGGCCCATTCTCCTGTCTATAAGGAAGCTTCCTAGCTCTA---CTCATGGCCTTTATTTTCTTTTTCATTTTCAGttctttccttctttcagacttccagtgtagagtgttgactcagtcatacctctcagttcttggaacactatcatcatcagtccatgcaaggtcttctggttttatttgtattttctcctctctccccaatttttattcccattctcctcactcccaaaggcagctactccctaatgttt-------ttC-TTTTTTAAAAAA
s panTro5.chr6             30388171 474 + 175400573 GAATTGCTGGGCTGCTGGACTATGTGAGGAGCAGTCACACTG----ATGTGCCTCAGAGAACCAGAGGGGTTATTGTAAGGACCAAGGTGGGACCTATAAGGGAATCTCTCTGGAGCCCAGGAACCGTGATGACAGTGAGCTGGTTGTAATGGGAACTAGAGCCTAGGCAGATGCATTGTCTCTCTGGTCGGCTTACTTTGCTCTGGATGTGGGGCCCATTCTCCTGTCTATAAGGAAGCTTCCTAGCTCTA---CTCATGGCCTTTATTTTCTCTTTCATTTTCAGttctttccttctttcagacttccagtgtagagtgttgactcagtcatacctctcagttcttggaacactatcattatcagcccatgcaaggtcttctggttttatttgtattttctcctctctccccaatgtttattctcattctcctcactcccataggcagctactccctaatgttt-------ttC-CTTTATAAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30622480 474 + 173848474 GAATTGCTGGGCTGCTGGACTATGTGAGGAGCAGTCACACTG----ATGTGCCTCAGAGAACCAGAGGGGTTATTGTAAGGACCAAGGTGGGACCTATAAGGGAATCTCTCTGGAGCCCAGGAACCGTGATGACAGTGAGCTGGTTGTAATGGGAACTAGAGCCTAGGCAGATGCATTGTCTCTCTGGTCGGCTTACTTTGCTCTGGATGTGGGGCCCATTCTCCTGTCTATAAGGAAGCTTCCTAGCTCTA---CTCATGGCCTTTATTTTCTCTTTCATTTTCAGttctttccttctttcagacttccagtgtagagtgttgactcagtcatacctctcagttcttggaacactatcattatcagcccatgcaaggtcttctggttttatttgtattttctcctctctccccaatgtttattctcattctcctcactcccataggcagctactccctaatgttt-------ttC-CTTTATAAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     330221 476 +   2037526 GAATTGCTGGGCTGCTGGACTATGTGAGGAGCAGTCACACTG----ATGTGCCTCAGAGAACCAGAGGGGTTATTGTAAGGAGCAAGGTGGGACCTATAAGGGAATCTCTCTGGAGCCCAGGAACCGTGATGACAGTGAGCTGGTTGTAATGGGAACTAGAGCCTAGGCAGATGCATTGTCTCTCTGGTGGGCTTACTTTGCTCTGGATGTGGGGCCCATTCTCCTGTCTATAAGGAAGCTTTATAGACATGGCCTTTATGGCCTTTATTTTCTC-TTCATTTTCAGttctttccttctttcagacttccagtgtagagcgttgactcagtcatacctctcagttcttggaacactatcattatcagcccatgcaaggtcttctggttttatttgtattttctcctctctccccaatttttattctcattctcctcactcccataggcagctactccctaatgctt-------ttG-TTTTTTAAAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74997626 474 + 122973662 GAACTGCTAGGCTGCTGGACTATGTGAGGAGCCGTCACACTG----AGGTGCCTCAGAGAACCAGAGGGGTTATTGGAAGGACCAAGGTGGGACCTGTAAGGGAATCTCTCTGGAGCCCAGGAACCGTGATGACAGTGAGCTGGTTGTAATGGGAACTAGAGCCTAGGCAGATGCATTGTCTCTCTGGTCAGCTTACTTTGCTCTGGATGTGGGGCCCATTCTCCTGTCTATAAGGAAGATTCCTAGCTCTA---CTCATGGCCTTTATTTTCTCTTTCATTTTCAGttctttccttctttcagacttccagcgcagagcgttgactcactcatacctctcggttcttggaacactatcatcatcagtccatgcaaggtcttctggttttatttgtattttctcctctctccccaatttttattcccattctcctcactcccataggcagctactccctaatgttt-------ttc-ttttttaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30875212 468 + 172585720 GAACTGCTGGGCTGCTGGACTATGTGAGGAGCAGCCACACTG----AGGTGCCTCAGAGAACCAGAGGG------GTAAGGACCAAGGTGGGACCTATAAGGGAATCTCTCTGGAGCCCAGGGACCGTGATGACAGTGAGCTGGTTGTAATGGGAACTAGAGCCAACACAGATGCATTGTCTCTCTGGTCAGCTTACTTCGCTCTGGATGTGGGGTCCGTTCTCCTGTCTATAAGGAAGCTTCCTGACTCTA---CTCATGGCCTTTATTTTCTCTTTCATTTTCAGttctttccttctttcagacttccagtgtagagcattgactcaatcatacctctcggttcttggaacatgatcatcatcagttcatgcaaggtcttattgttttatttgtattttctcctctctctccaatttttattcccattctcctcactcccgtaggcagttactcgctaatgttt-------ttC-TTTTTTAAAAAA
i rheMac8.chr4             C 0 I 15212
s macFas5.chr4             30164676 468 - 170955103 GAACTGCTGGGCTGCTGGACTATGTGAGGAGCAGCTACACTG----AGGTGCCTCAGAGAACCAGAGGG------GTAAGGACCAAGGTGGGACCTATAAGGGAATCTCTCTGGAGCCCAGGGACCGTGATGACAGTGAGCTGGTTGTAATGGGAACTAGAGCCAACACAGATGCATTGTCTCTCTGGTCAGCTTACTTCGCTCTGGATGTGGGGTCCGTTCTCCTGTCTATAAGGAAGCTTCCTGACTCTA---CTCATGGCCTTTATTTTCTCTTTCATTTTCAGttctttccttctttcagacttccagtgtagagcattgactcaatcatacctctcggttcttggaacatgatcatcatcagttcatgcaaggtcttattgttttatttgtattttctcctctctctccaatttttattcccattctcctcactcccgtaggcagttactcgctaatgttt-------ttC-TTTTTTAAAAAA
i macFas5.chr4             C 0 I 2
s macNem1.NW_012012100v1     413490 468 +   1495729 GAACTGCTGGGCTGCTGGACTATGTGAGGAGCAGCTACACTG----AGGTGCCTCAGAGAACCAGAGGG------GTAAGGACCAAGGTGGGACCTATAAGGGAATCTCTCTGGAGCCCAGGGACCGTGATGACAGTGAGCTGGTTGTAATGGGAACTAGAGCCAACACAGATGCATTGTCTCTCTGGTCAGCTTACTTCGCTCTGGATGTGGGGTCCGTTCTCCTGTCTATAAGGAAGCTTCCTGACTCTA---CTCATGGCCTTTATTTTCTCTTTCATTTTCAGttctttccttctttcagacttccagtgtagagcattgactcaatcatacctctcggttcttggaacatgatcatcatcagttcatgcaaggtcttattgttttatttgtattttctcctctctctccaatttttattcccattctcctcactcccgtaggcagttactcgctaatgttt-------ttC-TTTTTTAAAAAA
i macNem1.NW_012012100v1   C 0 I 15276
s cerAty1.NW_012002535v1     517345 474 -    863181 GAACTGCTGGGCTGCTGGACTATGTGAGGAGCAGCCACACTG----AGGTGCCTCAGAGAACCAGAGGGGTTATTGTAAGGACCAAGGTGGGACCTATAAGGGAATCTCTCTGGAGCTCAGGGACCGTGATGACAGTGAGCTGGTTGTAATGGGAACTAGAGCCAAGACAGATGCATTGTCTCTCTGGTCAGCTTACTTCGCTCTGGATGTGGGGTCCGTTCTCCTGTCTATAAGGAAGCTTCCTGACTCTA---CTCATGGCCTTTATTTTCTCCTTCATTTTCAGttcttttcttctttcagacttccagtgtagagcattgactcaatcatacttctcggttcttggaacatgatcatcatcagttcatgcaaggtcttattgttttatttgtattttctcttctctctccaatttttattcccattctcctcactcccgtaggcagttactccctaatgttt-------ttC-TTTTTTAAAAAA
i cerAty1.NW_012002535v1   C 0 I 2
s chlSab2.chr17            29664232 474 -  71996105 GAACTGCTGGGCTGCTGGACTATGTGAGGAGCAGCCACACTG----AGGTGCCTCAGAGAACCAGAGGGGTTATTGTAAGGACCAAGGTGGGACCTATAAGGGAATCTCTCTGGAGCCCAGGAACCATGATGACAGTGAGCTGGTTGTAATGGCAACTAGAGCCAAGACAGATGCATTGTCTCTCTGGTCAGCTTACTTCACTCTGGATGTGGGGTCCGTTCTCCTGTCTATAAGGAAGCTTCCTGACTGTA---CTCATGGCCTTTATTTTCTCTTTCATTTTCAGttctttccttctttcagacttccagtgtagagcattgactcaatcatacctctcggttcttggaacacgatcatcatcagttcatgcaaggtcttattgttttatttgtattttctcctctctctccaatttttattcccattctcctcactccTGTAGGCAGTTACTCCCTAATGGTT-------TTC-GTTTTTAAAAAA
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012107142v1     399361 474 -    735854 GAACTGCTGGGCTGCTGGACTATGTGAGGAGCAGCCACACTG----AGGTGCCTCAGAGAACCAGAGCGGTTATTGTAAGGACCAAGGTGGGACCTATAAGGGAATCTCTCTGGAGCTCAGGGACCGTGATGACAGTGAGCTGGTTGTAATGGAAACTAGAGCCAAGACAGATGCATTGTCTCTCTGGTCAGCTTACTTCGCTCTGGATGTGGGGTCCGTTCTCCTGTCTATAAGGAAGCTTCCTGACTCTA---CTCATGGCCTTTATTTTCTCCTTCATTTTCAGttctttccttctttcagacttccagtgtagagcattgactcaatcatacttctcggttcttggaacatgatcatcatcagttcatgcaaggtcttattgttttatttgtattttctcctctctctccaatttttattcccattctcctcactccTGTAGGCAGTTACTCCCTAATGttt-------ttc-tttttttaaaaa
i manLeu1.NW_012107142v1   C 0 I 3
s colAng1.NW_012115577v1     303438 474 -   1829203 GAACTGCTGGGCTGCTGGACTATGTGAGGAGCAGTCACACTG----AGGTGCCTCAGAGAACCAGAGGGGTTATTGTAAGGACCAAGGTGGGACCTATAAGGGAATCTCTCTGGAGCCCAGGGACCGTGATGACAGTGAGCTGGTTGTGATGGGAACTAGAGCCAAGACAGATGCATTGTCTCTCTGGTCAGCTTACTTCGCTCTGGATGTGGGGTCCATTCTCCTGTCTATAAGGAAGCTTCCTGACTCTA---CTCATGGCCTTTATTTTCTCTTTCATTTTCAGttctttccttctttcagacttccagtatagagcattgactcaatcatacctctcggttcttggaacatgatcatcatcagttcatgcaagatcttattgttttatctgtattttctcctctctctccaatttttattcccattctcctcactcctgtaggcagttactccctaatgttt-------ttC-TTTTTAAAAAAA
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30501095 473 + 171630274 GAACTGCTGGGCTGCTGGACTGCGTGAGGAGCAGTCCCACTG----AGGTGCCTCAGAGAACCAAAGGGGATATTGTAAGGATCCAGGTGAGACCTATAAGGGAATCTCTCTGGAGCCCAAGAACTGTGATGACAGTGAGCTGGTTGTAATGAGAACTAAAGCTGACGCAGATGCATTGTCTCTCTGGTCGGCTTACTCTGCTCTGGATGTGGGGCCCATTCTCTTGTCTACAAGGAAGCTTCCTGGCTCTA---CTCATGGCCTTTATTTTCTCTTTCATTTTCAGttctttccttctttcagactt-cagtgtagagcgctgactcaatcatacctctcggttcttggaacacgatcatcatcagtccatgcaagttcttcttgttttatttgtattttcttctctctctccaatttttattcccattctcctcattcccacaggcagctattccctaatgttt-------ttc-ttttttaaaaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           307670 474 +    515838 GAACTGCTGGGCTGCTGGACTGCGTGAGGAGCAGTCCCATTG----AGGTGCCTCAGAGAACCAGAGGGGATATTGTAAGGACCCAGGTGAGACCTGGAAGGGAATCTCTCTGGAGCCCAAGAACTGTGATGACAGTGAGCTGGTTGTAATGAGAACTAGAGCTGAAGCAAATGCATTGTCTCTCTGGTCGGCTTACTCTGCTCTGGATGTGGGGCCCATTCTCCCATCTACAAAGAAGCTTCCTGGCTCTA---CTCATGGCCTTTATTTTCTCTTTCATTTTCAGttctttccttctttcatactt-cagtgtagagcgctgactcagtcatacctctcggttcttggaacacgatcatcatcagtccatgcaagatcttcttgttttatttgtattttcttctctctttcccatttttactcccattctcctcattcccataggcagctattccctaatgctt-------ttCTTTTTTTAAAAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     938481 474 -   1771730 GAACTGCTGGGCTGCTGGATTGCATGAGGAGCAGTCCCACTG----AGGTGCCTCAGAGAACCAGAGGGGATATTGTGAGGACCCAGGTGAGGCCTGTAAGGGAATCTCTCTGGAGCCCAAGAACTGTGATGACAGTGAGCTGGTTGTAACAAGAACTAGAGCTGAGGCAGATGCATTGTCTCTCTGGTCGGCTTACTCTGCTCTGGCTGTGGGGCCCATTCTCCCGTCTACAAGGAAGCTTCCTGGCTCTA---CTCATGGCCTTTATTTTCCCTTTCATTTTCAGttctttccttccttcagactt-cagtgcagagcgctgactcaatcatacctctctgttcttggaacacaatcatcatcagtccatgcaagatattcttgttttatttgtattttcttctctctctccaatttttactcccattctcctctttcccataggcagctattccctaatgttt-------ttctttttttaaaaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     120068 468 -    486031 GAACTGCTGGGCTGCTGGACTGCGTGAGGAGCAGTCCCACTG----AGGTGCCTCAGAGAACCAGAGGGGATATTGTAAGGACCCAGGTGAGACCTGTAAGGGAATCTCTCTGGAGCCCAAGAACTGTGATGACAGTGAGCTGGTTGTAATGAGAACTAGAGCTGACACAGATGCATTGTCTCTCTGGTCGGCTTACTCTGCTCTGAATGTGGGGCCCATTCTCTTGTCTACCAGGAAGCTTCCTGGCTCTA---CTCGTGGCCTTTATTTTCTCTTTCATTTTCAGttctttccttctgtcagactt-cagtgtagagcactgactcaatcatacctctcagttcttggaacacgatcatcatcagtccatgcaagatcttc-----ttatttgtattttctcctctctctccaatttttattcccattctcctcacccccataggcagctattccctaatgttt-------ttc-tttttttaaaaa
i aotNan1.NW_018496901v1   C 0 C 0
s canFam3.chr35            26365423 435 +  26524999 CAGATGCAAGGCTGTTGGCTTACGTGAGGGGTTGTCAT-CTGCTAAAGGAGCCCC--AAGATCAGAGGGGTCGCTGTGAGGACCCAGGTGGGGTCTGCAGGTGGAACAGTCCAAAGCCCAGAAC---TGATTACAGCAGGCCACCCATGAAGGG-ACTGTAGCCACCGCACTGG--------CTCTGGTCTACACGCTTTGCTTTGCATGTGGG--CGGATCTCCCATCTATGGGCAGGCCTCCTGGTTTTA---TTGGTGCCCTTTATTTTCCCACTC-CTTCCAACTCCTGTCTTTTCCTGGACTTCCAGGGCATGG----------GTCAT--------------------CAGGCAGCAGCAGCCCAGGCAAGGTCTTCTTGTCTTATTCATACTTTCTCCTGTCTTTCCATCTCTCTTTCCCGTCCTCCTCAC-CTCATGGTCA-CTCCCCTCTAATGTTTCCAGATGCCC-TTGGTTAAGACA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     317388 63854 -   1411461 I
e otoGar3.GL873550           352535 19402 +  18854210 I

a score=12634.000000
s hg38.chr6_GL000254v2_alt  1519878 5 +   4827813 ttttt
s panTro5.chr6             30388645 5 + 175400573 ttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30622954 5 + 173848474 ttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     330697 5 +   2037526 ttttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74998100 5 + 122973662 atttt
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30165146 3 - 170955103 --TTT
i macFas5.chr4             I 2 I 15222
s cerAty1.NW_012002535v1     517821 3 -    863181 --ttt
i cerAty1.NW_012002535v1   I 2 I 1
s chlSab2.chr17            29664709 3 -  71996105 --ttt
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012107142v1     399838 3 -    735854 --ttt
i manLeu1.NW_012107142v1   I 3 C 0
s colAng1.NW_012115577v1     303913 5 -   1829203 Atttt
i colAng1.NW_012115577v1   I 1 C 0
s calJac3.chr4             30501568 5 + 171630274 agttc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           308144 5 +    515838 AGttc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     938955 5 -   1771730 aaatc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     120536 5 -    486031 agttc
i aotNan1.NW_018496901v1   C 0 C 0
s canFam3.chr35            26365858 5 +  26524999 TATCT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     317388 63854 -   1411461 I
e otoGar3.GL873550           352535 19402 +  18854210 I
e macNem1.NW_012012100v1     413958 15276 +   1495729 I
e rheMac8.chr4             30875680 15212 + 172585720 I

a score=9100.000000
s hg38.chr6_GL000254v2_alt  1519883 1 +   4827813 c
s panTro5.chr6             30388650 1 + 175400573 c
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30622959 1 + 173848474 c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     330702 1 +   2037526 c
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74998105 1 + 122973662 c
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     517825 1 -    863181 c
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29664712 1 -  71996105 c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     399841 1 -    735854 c
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     303918 1 -   1829203 c
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30501573 1 + 171630274 c
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           308149 1 +    515838 c
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     938960 1 -   1771730 c
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     120541 1 -    486031 c
i aotNan1.NW_018496901v1   C 0 C 0
s canFam3.chr35            26365863 1 +  26524999 C
i canFam3.chr35            C 0 I 20190
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     317388 63854 -   1411461 I
e otoGar3.GL873550           352535 19402 +  18854210 I
e macNem1.NW_012012100v1     413958 15276 +   1495729 I
e macFas5.chr4             30165149 15222 - 170955103 I
e rheMac8.chr4             30875680 15212 + 172585720 I

a score=1020803.000000
s hg38.chr6_GL000254v2_alt  1519884 166 +   4827813 aac-----ttttaagttcaggggtacatgtgcaagatgtgcaggtttgttacatagg----taaatgtgtgccatagtagtcagctacacagatcatcctatcacccaggaattaagcccagcacccattagctattcttcctgatcctctccctcctcccacccccgccctcca
s panTro5.chr6             30388651 166 + 175400573 aac-----ttttaagttcaggggtacatgtgcaagatgtgcaggtttgttacatagg----taaatgtgtgccatagtagtcagctacacagatcatcctatcacccaggaattaagcccagcacccattagctattcttcctgatcctctccctcctcccacccccgccctcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30622960 166 + 173848474 aac-----ttttaagttcaggggtacatgtgcaagatgtgcaggtttgttacatagg----taaatgtgtgccatagtagtcagctacacagatcatcctatcacccagggattaagcccagcacccattagctattcttcctgatcctctccctcctcccacccccgccctcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     330703 166 +   2037526 aac-----ttttaagttcaggggtacatgtgcaagatgtgcaggtttgttacatagg----taaatgtgtgccatagtagtcagctacacagatcatcctatcacccaggaattaagcccagcacccattagctattcttcctgatcctctccctcctcccacccccgccctcca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74998106 165 + 122973662 aac-----ttttaagttcaggggtacatgtgcaagatgtgcaagtttgttacatagg----taaatgtgcgccatagtagtcagctacacagatcatcctatcacccaggaattaagcccagcacccattagctattcttcctgatcctctccctcctccca-ccctgccctcca
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     517826 166 -    863181 aac-----ttttaagtttggggatacatgtgcaagatgtgcaggtttgttacacagg----taaatgtgtgccattgtagtcagctacacagatcttcctatcaccctggaattaagcccagcacccattagctattcttcctgatcctttccctcctcccacccctgccttcca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29664713 166 -  71996105 aac-----ttttaagtttggggatacatgtgcaagatgtgcaggtttgttacatagg----taaatgtgtgccattgtagtcagctacacagatcatcctatcaccgtggaattaagcccagcacccattagctattcttcctgattctctccctcctcccacccccaccttcca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     399842 166 -    735854 aac-----ttttaagtttggggatacatgtgcaagatgtgcaggtttgttacacagg----taaatgtgtgccattgtagtcagctacacagatcatcctatcaccctggaattaagcccagcacccattagctattcttgctgatcctctccctcctcccacccctgccttcca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     303919 162 -   1829203 aac-----ttttaagtttgggaatacatgtgcaagatgtacaggtttgttaca--------taaatgtgtgccattgtagtcagctacacagatcatcctatcaccctggaattaagcccagcacccattagctattcttcctgatcctctccctccccccacccccaccttccA
i colAng1.NW_012115577v1   C 0 I 17648
s calJac3.chr4             30501574 170 + 171630274 aac-----ttttaagttcaagggtacatgtgcaagatgcgcaggtttgttacataggtaaataaatgtgtgccatggtagtcggctacacagatcatcctgtcacccaggaattaagcccagcattcattagctcttcttcatgatcctctccctccttccacccccatcctcca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           308150 168 +    515838 aacttttattttaagttcaagggtacatgtgcaagatgtgcaggtttgttacataggtaaataaatgtgtgccatggt-------tacatagatcatcctatcacccaggaattaagcccagcactcattagctcttcttcctgaacttctccctacttccacctccaccctcca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     938961 175 -   1771730 aatttttattttaagttcaagggtacatgtgcaggatgtgcaggtttgttacataggtaaataaatgtgtgccacggtagtcggctacacagatcatcctatcacccaggaattaagcccagcactcattagctcttcttcctgatcctctccctccttccacccccaccctcca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     120542 158 -    486031 aacttttattttaagttcaagggtacatgtgcaagatgtgcaggtttgttacataggtaaataaatgtgtgccatggttgtcagctacacagatcatcctgtcacctaggaattaagcccagcactcattagctcttcttcctcatcctctc-----------------cctcca
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     317388 63854 -   1411461 I
e canFam3.chr35            26365864 20190 +  26524999 I
e otoGar3.GL873550           352535 19402 +  18854210 I
e macNem1.NW_012012100v1     413958 15276 +   1495729 I
e macFas5.chr4             30165149 15222 - 170955103 I
e rheMac8.chr4             30875680 15212 + 172585720 I

a score=2927763.000000
s hg38.chr6_GL000254v2_alt  1520050 551 +   4827813 acagggcccagtgtgtgttgttcccc-ccgcctcctgccatgtgtccatatg-ttctcattatttagatcctacttataagtgaaaacatgctgtatttggttttctgttcctactttagtttgctaaggataacaacctccagttccattcatgtccctgcaaaggacatgatctcattcctttttatggctgtaaaatattccatggtatatgtgtaccacattttctttatccagtctatcattgatgggcatttagtttgatttcatatctt-tgctattgtgaatactactgcaatgaacatacacatgcatgtatctttatagagaacgatttctattcctttgggtatatacccagtaaatgagattgctgggttgaatggtatttctgcctctaggtttttgaggaattgccacacagtcttccacaatggttgaactaatttacactcacaccaacagtgttaaaagcattcgtttttcttcacaaccttgccagcatctgttgctttttgactttttagtaatagccattttgactggtgcgag
s panTro5.chr6             30388817 550 + 175400573 acagggcccagtgtgtgttgttcccc-ccgcctcctgccatgtgtccatatg-ttctcattatttagatcctacttataagtgaaaacatgctgtatttggttttctgttcctactttagtttgctaaggataacaacctccacttccattcatgtccctgcaaaggacatgatctcattcctttttatggctgtaaaatattccatggtatatgtgtaccacattttctttatccagtctatcattgatgggcatttagtttgatttcatatctt-tgctattgtgaatactaccgcaatgaacatacacatgcatgtatctttatagagaacgatttctattcctttgggtatatacccagt-aatgagattgctgggttgaatggtatttctgcctctaggtttttgaggaattgccacacagtcttccacaatggttgaactaatttacactcacaccaacagtgttaaaagcattcgtttttcttcacaaccttgccagcatctgttgctttttgactttttagtaatagccattttgactggtgcgag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30623126 550 + 173848474 acagggcccagtgtgtgttgttcccc-ccgcctcctgccatgtgtccatatg-ttctcattatttagatcctacttataagtgaaaacatgctgtatttggttttctgttcctactttagtttgctaaggataacaacctccacttccattcatgtccctgcaaaggacatgatctcattcctttttatggctgtaaaatattccatggtatatgtgtaccacattttctttatccagtctatcattgatgggcatttagtttgatttcatatctt-tgctattgtgaatactaccgcaatgaacatacacatgcatgtatctttatagagaacgatttctattcctttgggtatatacccagt-aatgagattgctgggttgaatggtatttctgcctctaggtttttgaggaattgccacacagtcttccacaatggttgaactaatttacactcacaccaacagtgttaaaagcattcgtttttcttcacaaccttgccagcatctgttgctttttgactttttagtaatagccattttgactggtgcgag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     330869 550 +   2037526 acagggcccagtgtgtgttgttcccc-ccgcctcctgccatgtgtccatatg-ttctcattatttagatcctacttataagtgaaaacatgctgtatttggttttctgttcctactttagtttgctaaggataacaacctccacttccattcatgtccctgcaaaggacatgatctcattcctttttatggctgtaaaatattccatggtatatgtgtaccacattttctttatccagtgtatcattgatgggcatttagtttgatttcatatctt-tgctattgtgaatactactgcaatgaacatacacatgcatgtatctttatagagaacgatttctattcctttgggtatatacccagt-aatgagattgctgggttgaatggtatttctgcctctaggtttttgaggaattgccacacagtcttccacaatggttgaactaatttacactcacaccaacagtgttaaaagcattcgtttttcttcacaaccttgccagcatctgttgctttttgactttttagtaatagccattttgactggtgcgag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74998271 549 + 122973662 acagggcccagtgtgtgttgttcccc-ccgcctcccgccatgtgtccatatg-ttctcattatttagatcctacttataagtgaaaatatgctgtatttggttttctgttcctactttagtttgctaaggataacaacctccagttccattcacgtccctgcaaaggacacgatctcatccctttttatggctgtaaaatattccatgatatatgtgttccacattttctttatccagtctatcattgaggggcatttagtttgatttcatgtctt-tgctattgtgaatactactgcaatgaacatacacatgcatgtgtc-ttatagagaacgatttctattcctttggatatatacccagt-aatgagattgctgggttgtatggtatttctgcctctaggtttttgaggaattgccacacagtcttccacaatggttgaactaatttacactcacaccaacagtgttaaaagcattcctttttcttcacgaccttgccaacatctgttgctttttgactttttaataatagccattttgactggtgcgag
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     517992 550 -    863181 acaggccccagtgtgtgttgttccccaccacctcccgtcatgtgttcatgtg-ttctcattatttagatcctacttataagtgaaaacatgctgtacttggttttctgttcctactttagtttgctaaggataacggccttcagttccattcgtgtccctgcaaaggacatgatctcattcctttttttggctgtatagtattccatggtatatgtgtaccacattttctttatccagtctatcgttgatgggcatttagtttgacttcatgtctt-tgctattgtgaatactaccgcaatgaacatacacatgcatgtgtctttatagagaacgatttctattcctttgggtatatacccagt-aatgagattgctgggctgaatggtatatctgcctctaggtctttgaggaatcgccacacagtcttccacaatggttgaactaatttacactcacaccaacagtgtc-aaagcattcctttttcttcacaaccttgccagcatctgttgctttttgactttttaataatagccattttgactggtgcgag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29664879 550 -  71996105 acagagcccagtgtgtattgttccccaccacctcccgtcgtgtgtccatgtg-ttctcattatttcgatcctacttataagtgaaaacatgctatacttggttttctgttcctactttagtttgctaaggataacagtctccagttccattcatgtccctgcaaaggacatgatctcattcctttttatggctgtatagtattccatggtatatgtgtaccacattttctttatccagtctatcattgatgggcatttagtttgacttcatatctt-tgctattgtgaatactaccacaatgaacatacacatgcatgtgtctttatagagaacgatttctattcctttgggtatatacccagt-aatgagattgctgggctgaatggtatatctgcctctaggtctttgaggaatcgccacacagtcttccacaatggttgaactaatttacactcacaccaacagtgtc-aaagcattcctttttcttcacaaccttgccagcatctgttgctttttgactttttaataatagccattttgactagtgcgag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     400008 550 -    735854 acagggcccagtgtgtgttgttccccacgaccttccgtcatgtgttcatgtg-ttctcattatttagatcctacttataagtgaaaacatgctgtacttggttttctgttcctactttagtttgctaaggataacggccttcagttccattcatgtccctgcaaaggacatgatctcattcctttttttggctgtatagtattccatggtatatgtataccacattttctttatccagtctatcattgacgggcatttagtttgacttcatgtctt-tgctattgtgaatactaccgcaatgaacatacacatgcatgtgtctttatagagaacgatttctattcctttgggtatatacccagt-aacgagattgctgggctgaatggtatatctgcctctaggtctttgaggaatcgccacacagtcttccacaatggttgaactaatttacactcacaccaacagtgtc-aaagcattcctttttcttcacaaccttgccagcatctgttgctttttgactttttaataatagccattttgactggtgcgag
i manLeu1.NW_012107142v1   C 0 I 14567
s calJac3.chr4             30501744 541 + 171630274 acagagcccagtgtgtgttgttccccacc--------ccgtgtgtccatgtgtttctcattatttagatcctacttataagtgaaaacgtg--gtatttggttttctgttcctgggttagtttgcaaaggataatggcttccagttccattcatgtccctgcaaaggatataatctcattcctttttatggctgcataatattccatggtatatgtgtaccacattttctttatccagtctatcattggtgggcatttcatttgatttcatgtttt-tgctgttgtgaatagtgctgcaatgaacatacacatgcatgtatctttatagagaatgatttatattcctttgggtatatacccaat-aatcagattgccggattgaatggtatttctgcctctcgatctttgaggaatcaccatgcagtctttcacaatggttgaaataatttacactcacaccaacagtgta-aaagcattcctttttcttcacaaccttgccagtatctgtcgcttttcaagtttttattaacagccattctgactggtgtgag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           308318 540 +    515838 acagaacccagtgtgtgttgttccctgcc--------ccatatgtccatgtg-ttctcattatttagatcctacttctaagtgaaaacgtg--gtatttggttttctgttcctgtgttagtttgcaaaggataatggcttccagtttcattcatgtccctgcaaaggatacaatctcattcctttttatggttgcataatattccatggtatatgtgtaccacatattctttatccagtctatcattggtgggcatttcatttgacttcatgtttt-tgctattgtggatagtgctgcaatgaacatacacatgcatgtatctttatagagaatgatttatattcctttgggtatatacccaat-aatcagattgctggattgaatggtatttctgcctctagatctttgaggaattgccatgcagtctttcacaatggttgaaataatttacactcacaccaacagtgta-aaagcattcctttttcttcataaacttgccagtatctgttgcttttcgagtttttattaatagccattctgactggtgtgag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     939136 541 -   1771730 acagagcccagtgtgtgttgttccccacc--------ccatgtatccatgtg-ttctcattatttagatcctacttataagtgaaaatgtg--gtatttggttttctgttcctgtattagtttgctatggataatggcttccagttccattcatgtccctgcaaaagatataatctcattcctttttatggctgcataatattccatggtgtatgtgtaccgcattttctttatccagtctatcactgatgggcatttcatttgatttcatgttttctgctattgtgaatagtgctgcaatgaacatacacatgaatgtatctttatagagaacgatttatattcctttgggtatatacccaat-aatcagattgctggattgaatggtatttctgcctgtaggtctttgagaaatcgccacgcagtctttcacaatggttgaaataatttacactcacaccaacagtgta-aaagcattcttttttcttcataaccttgccagtacctgttgctttttgagtttttattaacagccattctgactggtgtgag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     120700 536 -    486031 acagagcccagtgtgtg----tccccacc--------ccatctgtccatgtg-ttctcattatttagatcctacttataagtgaaaacgtg--gtatttggttttctgttcctgtgttagtttgctaaggataatggcttccagttccattcatatccctgcaaagtatataatctcattcctttttatggctgcataatattccatggtatatatgtaccatattttctttatccagtctatcattgacgggcatttcatttgatttcatgtttt-tgctattgtgaatagtgctacaatgaacatacacatgcatgtatctttatagagaacgatttatattcctttgggtatatacccaat-aatcagattgctggattgaatggtatttctgcctgtaggtgtttgagaaatcgccatacagtctttcacaatggttgaactaatttacactcacaccaacagtgta-aaagcattcctttttcttcacgaccttgccagtatctgttgctttttgagtttttattaatagccattctgactggtgtgag
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     317388 63854 -   1411461 I
e canFam3.chr35            26365864 20190 +  26524999 I
e otoGar3.GL873550           352535 19402 +  18854210 I
e colAng1.NW_012115577v1     304081 17648 -   1829203 I
e macNem1.NW_012012100v1     413958 15276 +   1495729 I
e macFas5.chr4             30165149 15222 - 170955103 I
e rheMac8.chr4             30875680 15212 + 172585720 I

a score=316574.000000
s hg38.chr6_GL000254v2_alt  1520601 71 +   4827813 atagtatctcattgtag-ttttgatttgattttcacctataaccatctgatatttgacaaacctgacaaaaa
s panTro5.chr6             30389367 71 + 175400573 atagtatctcattgtag-ttttgatttgattttcacctataaccatctgatatttgacaaacctgacaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30623676 71 + 173848474 atagtatctcattgtag-ttttgatttgattttcacctataaccatctgatatttgacaaacctgacaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     331419 71 +   2037526 atagtatctcattgtag-ttttgatttgattttcacctataaccatctgatatttgacaaacctgacaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            74998820 71 + 122973662 atagtatctcattgtgg-ttttgatttgatttTcacctataaccatctgatatttgacaaacctgacaaaaa
i nomLeu3.chr1a            C 0 I 4066
s cerAty1.NW_012002535v1     518542 71 -    863181 atagtatctcattgtgg-ttttgatttgattttcacctataaccatctgatacttgacaaacctgacgaaaa
i cerAty1.NW_012002535v1   C 0 I 14265
s chlSab2.chr17            29665429 71 -  71996105 atagtatctcattgtgg-ttttgatttgatttTcacctataaacatctgatacttgacaaacctgacgaaaa
i chlSab2.chr17            C 0 I 14164
s calJac3.chr4             30502285 69 + 171630274 atagtatttcattgtgg---tttatttgcttttcacctataaccatctgatatttgacaaacctgacaaaaa
i calJac3.chr4             C 0 I 8851
s saiBol1.JH378341           308858 72 +    515838 atagtatttcatcgtggttttttatttgcttttcacctataacaatctgctatttgacaaacctgacaaaaa
i saiBol1.JH378341         C 0 I 5956
s cebCap1.NW_016107755v1     939677 72 -   1771730 atagaatctcattgcggttttttatttgcttttcacctataaccatctgatatttgacaaacctgacaaaaa
i cebCap1.NW_016107755v1   C 0 I 5954
s aotNan1.NW_018496901v1     121236 72 -    486031 atagtatttcattgtggttttttatttgcttttcacctataaccatctgatatttgacaaacctgacaaaaa
i aotNan1.NW_018496901v1   C 0 I 8253
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     317388 63854 -   1411461 I
e canFam3.chr35            26365864 20190 +  26524999 I
e otoGar3.GL873550           352535 19402 +  18854210 I
e colAng1.NW_012115577v1     304081 17648 -   1829203 I
e manLeu1.NW_012107142v1     400558 14567 -    735854 I
e macNem1.NW_012012100v1     413958 15276 +   1495729 I
e macFas5.chr4             30165149 15222 - 170955103 I
e rheMac8.chr4             30875680 15212 + 172585720 I

a score=1146.000000
s hg38.chr6_GL000254v2_alt  1520672 2 +   4827813 TG
s panTro5.chr6             30389438 2 + 175400573 TG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30623747 2 + 173848474 TG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     331490 2 +   2037526 TG
i gorGor5.CYUI01015528v1   C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     317388 63854 -   1411461 I
e canFam3.chr35            26365864 20190 +  26524999 I
e saiBol1.JH378341           308930 5956 +    515838 I
e otoGar3.GL873550           352535 19402 +  18854210 I
e aotNan1.NW_018496901v1     121308 8253 -    486031 I
e cebCap1.NW_016107755v1     939749 5954 -   1771730 I
e calJac3.chr4             30502354 8851 + 171630274 I
e colAng1.NW_012115577v1     304081 17648 -   1829203 I
e manLeu1.NW_012107142v1     400558 14567 -    735854 I
e chlSab2.chr17            29665500 14164 -  71996105 I
e cerAty1.NW_012002535v1     518613 14265 -    863181 I
e macNem1.NW_012012100v1     413958 15276 +   1495729 I
e macFas5.chr4             30165149 15222 - 170955103 I
e rheMac8.chr4             30875680 15212 + 172585720 I
e nomLeu3.chr1a            74998891 4066 + 122973662 I

a score=150070.000000
s hg38.chr6_GL000254v2_alt   1520674 61 +   4827813 TCTCTAGTAGCAAGTATTACTAATCTATTAATTACTAAACTACCTTTAATCCAAGAGTAtt
s panTro5.chr6              30389440 61 + 175400573 TCTCTAGTAGCAAGTATTACTAATCTATTAATTACTAAACTCCCTTTAATCCAGGAGTAtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30623749 61 + 173848474 TCTCTAGTAGCAAGTATTACTAATCTATTAATTACTAAACTCCCTTTAATCCAGGAGTAtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      331492 61 +   2037526 TCTCTAGTAGCAAGTATTACTAATCTATTAATTACTAAACTCCCTTTAATCCAAGAGTAtt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             48077606 61 - 122973662 TCTCTAGTAGCAAGTATTACTAATCTATTAATTACTAAACTCCCTTTAATCCAAGAGTATT
i nomLeu3.chr1a            I 16718 n 4066
s macFas5.chr4             140890064 61 + 170955103 TCTCTAGTAGCAAGTATTATTAATCTATTAATTACCAAGCTTCCTTTAATCCAAGAGTATT
i macFas5.chr4             n 15222 n 15222
s calJac3.chr4             141255428 61 - 171630274 TCTCTAGTAGCAAGTATTACTAATCTATTAATTACTAAACTCCCTTTAATCCAAGAGTATT
i calJac3.chr4             I 15192 n 8851
s saiBol1.JH378341            317660 61 -    515838 TCTCTAGTAGTGAGTATTACTAATCTATTAATTAATAAACTCCCTTTAATCCAAGAGTATT
i saiBol1.JH378341         n 5956 n 5956
e micMur3.chr6                386557 38559 + 123392446 I
e mm10.chr17                58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1      317388 63854 -   1411461 I
e canFam3.chr35             26365864 20190 +  26524999 I
e otoGar3.GL873550            352535 19402 +  18854210 I
e aotNan1.NW_018496901v1      121308 8253 -    486031 I
e cebCap1.NW_016107755v1      939749 5954 -   1771730 I
e colAng1.NW_012115577v1      304081 17648 -   1829203 I
e manLeu1.NW_012107142v1      400558 14567 -    735854 I
e chlSab2.chr17             29665500 14164 -  71996105 I
e cerAty1.NW_012002535v1      518613 14265 -    863181 I
e macNem1.NW_012012100v1      413958 15276 +   1495729 I
e rheMac8.chr4              30875680 15212 + 172585720 I

a score=3136080.000000
s hg38.chr6_GL000254v2_alt   1520735 5743 +   4827813 [encoded data, 5766 characters]
s panTro5.chr6              30389501 5738 + 175400573 [encoded data, 5766 characters]
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30623810 5730 + 173848474 [encoded data, 5766 characters]
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      331553 5745 +   2037526 [encoded data, 5766 characters]
i gorGor5.CYUI01015528v1   C 0 C 0
e micMur3.chr6                386557 38559 + 123392446 I
e mm10.chr17                58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1      317388 63854 -   1411461 I
e canFam3.chr35             26365864 20190 +  26524999 I
e saiBol1.JH378341            317721 5956 -    515838 I
e otoGar3.GL873550            352535 19402 +  18854210 I
e aotNan1.NW_018496901v1      121308 8253 -    486031 I
e cebCap1.NW_016107755v1      939749 5954 -   1771730 I
e calJac3.chr4             141255489 8851 - 171630274 I
e colAng1.NW_012115577v1      304081 17648 -   1829203 I
e manLeu1.NW_012107142v1      400558 14567 -    735854 I
e chlSab2.chr17             29665500 14164 -  71996105 I
e cerAty1.NW_012002535v1      518613 14265 -    863181 I
e macNem1.NW_012012100v1      413958 15276 +   1495729 I
e macFas5.chr4             140890125 15222 + 170955103 I
e rheMac8.chr4              30875680 15212 + 172585720 I
e nomLeu3.chr1a             48077667 4066 - 122973662 I

a score=571426.000000
s hg38.chr6_GL000254v2_alt   1526478 120 +   4827813 gctcatgcctg-taatcccagcactttgagaggccaaaataggtggatcacctgaggtcaggagttcatgaacagcctggtcaatatggcaaaaccccgtctcttctaaaaacacaaaaaa
s panTro5.chr6              30395239 120 + 175400573 gctcatgcctg-taatcccagcactttgggaggccaagacaggtggatcacctgaggtcaggagttcatgaacagcctggtcaatatggcaaaaccccatctcttctaaaaacacaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              30629540 120 + 173848474 gctcatgcctg-taatcccagcactttgggaggccaagacaggtggatcacctgaggtcaggagttcatgaacagcctggtcaatatggcaaaaccccatctcttctaaaaacacaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      337298 120 +   2037526 gctcatgcctg-taatcccagcactttgggaggccaagacaggtgggtcacctgaggtcaggagttcatgaacagcctggtcaatatggcaaaaccccgtctcttctaaaaacacaaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4              30890892 120 + 172585720 gctcatgcctg-taatcccagcactttgggaggccaagacgggtggatcacctgaggtcaggagttcgagaacagcctggtcaacatagcaaaaccccgtctcttctaaaaatacaaaaaa
i rheMac8.chr4             I 15212 C 0
s macFas5.chr4              30180371 120 - 170955103 gctcatgcctg-taatcccagcactttgggaggccaaggcgggtggatcacctgaggtcaggagttcgagaacagcctggtcaacatagcaaaaccccgtctcttctaaaaatacaaaaaa
i macFas5.chr4             I 15222 C 0
s macNem1.NW_012012100v1      429234 120 +   1495729 gctcatgcctg-taatcccagcactttgggaggccaaggcaggtgggttgcctgaggtcaggagtttgaaaacagcctggtcaacatagcgaaaccccgtctcttctaaaaatacaaaaaa
i macNem1.NW_012012100v1   I 15276 C 0
s cerAty1.NW_012002535v1      532878 120 -    863181 gctcatgcctg-taatcccagcactttgggaggccaaggcaggtgggttgcctgaggtcaggagttcgaaaacagcctggtcaacatagcaaaaccccgtctcttttaaaaatacaaaaaa
i cerAty1.NW_012002535v1   I 14265 C 0
s chlSab2.chr17             29679664 121 -  71996105 gctcatgcctgttaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagttcgagaacagcctggtcaacatagcaaaaccccgtctcttctaaaaatacaaaaaa
i chlSab2.chr17            I 14164 C 0
s manLeu1.NW_012107142v1      415125 120 -    735854 gctcatgcctg-taatcccagcactttgggaggccaaggcgggtggatcacctgaggtcaggagttcgagaacagcctggtcaacatagcaaaaccccgtctcttctaaaaatacaaaaaa
i manLeu1.NW_012107142v1   I 14567 C 0
s colAng1.NW_012115577v1      321729 120 -   1829203 gctcatgcctg-taatcccagcactttgggaggccaaggcgggtggatcacctgaggtcaggaatttgagaacagcctggtcaacgtagcgaaaccccacctcttctaaaaatacaaaaaa
i colAng1.NW_012115577v1   I 17648 C 0
e micMur3.chr6                386557 38559 + 123392446 I
e mm10.chr17                58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1      317388 63854 -   1411461 I
e canFam3.chr35             26365864 20190 +  26524999 I
e saiBol1.JH378341            317721 5956 -    515838 I
e otoGar3.GL873550            352535 19402 +  18854210 I
e aotNan1.NW_018496901v1      121308 8253 -    486031 I
e cebCap1.NW_016107755v1      939749 5954 -   1771730 I
e calJac3.chr4             141255489 8851 - 171630274 I
e nomLeu3.chr1a             48077667 4066 - 122973662 I

a score=17471.000000
s hg38.chr6_GL000254v2_alt  1526598 4 +   4827813 atta
s panTro5.chr6             30395359 4 + 175400573 atta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30629660 4 + 173848474 atta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     337418 4 +   2037526 atta
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30891012 4 + 172585720 atta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30180491 4 - 170955103 atta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     429354 4 +   1495729 atga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     532998 4 -    863181 atga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29679785 4 -  71996105 atta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     415245 4 -    735854 atta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     321849 4 -   1829203 atta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30511205 4 + 171630274 ACCA
i calJac3.chr4             I 8851 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     317388 63854 -   1411461 I
e canFam3.chr35            26365864 20190 +  26524999 I
e saiBol1.JH378341           317721 5956 -    515838 I
e otoGar3.GL873550           352535 19402 +  18854210 I
e aotNan1.NW_018496901v1     121308 8253 -    486031 I
e cebCap1.NW_016107755v1     939749 5954 -   1771730 I
e nomLeu3.chr1a            48077667 4066 - 122973662 I

a score=471507.000000
s hg38.chr6_GL000254v2_alt  1526602 97 +   4827813 gccagacatggtggtgtgcgcctgtagtcccaggtacttgggaggctgaggcaagagaatcgcttgaacctgggcagcggaggttgccagtaagcca
s panTro5.chr6             30395363 97 + 175400573 gccagacatggtggtgtgcgcctgtagtcccaggtacttgggaggctggggcaagagaatcgcttgaacctgggcagcggaggttgccagtaagccg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30629664 97 + 173848474 gccagacatggtggtgtgcgcctgtagtcccaggtacttgggaggctgaggcaagagaatcgcttgaacctgggcagcggaggttgccagtaagccg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     337422 97 +   2037526 gccagacatagtggtgtgcgcctgtagtcccaggtacttgggaggctgaggcaagagaattgcttgaacctgggcagcggaggttgccagtaagccg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30891016 97 + 172585720 gccagatgtggtggcgtgcgcctgtagtcccagctactcgggaggctgaggcaagagaatcacttgaacccaggtggtggaggttaccagtaagcca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30180495 97 - 170955103 gccagatgtggtggcgtgcacctgtagtcccagctactcgggaggctgaggcaagagaatcacttgaacccaggtggtggaggttaccagtaagcca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     429358 97 +   1495729 gccagatgtggtggcgtgcgcttggagtcccagctacttgggaggctgaggcaagagaattgcttgaacccaggtggtggaggttaccagtaagcca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     533002 97 -    863181 gccagatgtggtggcgtgcgcttggagtcccagctacttgggaggctgaggcaagagaatcgcttgaacccaggtggtggaggttaccagtaagcca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29679789 97 -  71996105 gccagatgtggtggcgtgcgcctgtagtcccagctacttaggaggctgaggcaagagaatcacttgaacccaggtggtggaggttaccagtaagcca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     415249 97 -    735854 gccagatgtggtggcgtgcgcctgtagtcccagctactcgggatgctgaggcaagagaatcacttgaacccaggtggtggaggttaccagtaagcca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     321853 97 -   1829203 gccagatgtggtggcgtgcgcctgcagtcccagctactcgggaggctgaggcaagagaatcgcttgaacccaggtggtggaggttaccagtaagcca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30511209 53 + 171630274 gccaggcacggtggctcatacctgtaatcccagcactttcggaggccaaggcg--------------------------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           314886 53 +    515838 gccaggcacagtggctcacgcctgtaatcccagaaccttgggaggccaaggtg--------------------------------------------
i saiBol1.JH378341         I 5956 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     317388 63854 -   1411461 I
e canFam3.chr35            26365864 20190 +  26524999 I
e otoGar3.GL873550           352535 19402 +  18854210 I
e aotNan1.NW_018496901v1     121308 8253 -    486031 I
e cebCap1.NW_016107755v1     939749 5954 -   1771730 I
e nomLeu3.chr1a            48077667 4066 - 122973662 I

a score=5726800.000000
s hg38.chr6_GL000254v2_alt  1526699 731 +   4827813 agatcatgccaccgcactccagcctgggcaacagagcgagactccgtctctattaaaaaaaaa--------------------agagaaaaTCTATGGCTCTTTCTGTTCTCCCATAACCATACTCTAAATGCACTCTT-----TCTGTA----CCcagtttgtccctgctttaggactttgctgttccctctagctgatgtgatcttagaccttccctctcaccattctgatttcagctctcatgccatcttttcagggaactcccttctgatcacacattataaaatagatactaggtcactatctatcacagacttatttcacttccttgcatagtgc-taattac-ttttttt---------------t----tttcaattttaacatactgcctgtcaccatttgctggaatataacctccaagagtgcag-aactttgttaaccttatcactgttgtaacctagaaacatcctggcacatcacgggtacttaataaatgAATTCAGGAGACATATGAAGCCTGGAG---ATAACA--GATTTGAGAGAATACAGAAAATAGGAGGAAAAGtcaacaagaaataattcaggcagggcacagtggctcacgcctgtaattccagtactttgggaggctgaggtgggaggatcacttgagccccagagctcaagg---------------------------ccac-agtaagctacgagtgcaccatcacta--------gagcctaggtgacagagtaagaccat-gtctctaa---aataataaaaaTTCAgccagttgtggtgactcacacctgtaatcc
s panTro5.chr6             30395460 726 + 175400573 agatcacaccaccgcactccagcctgcgcaacagagcgagactccatctctatt--aaaaaaa--------------------agagaaaaTCTATGGCTCTTTCTGTTCTCCCATAACCATACTCTAAATGCACTCTT-----TCTGTA----CCCAGTTTgtccctgctttaggactttgctgttccctctagctgatgtgatcttagaccttccctctcaccattcagatttcagctctcatgccatcttctcagggaactcccttctgatcacacattataaaatagatactaggtcactatctat--cagacttatttcacttccttgcatagtgc-taattac--tttttt---------------t----tttcaattttaacatactgcctgtcaccatttgctggaatataacctccaagagtgcag-aactttgttaaccttatcactgttgtaacctagaaacatcctggcacatcacgggtacttaataaatGAATTCAGGAGACATATGAAGCCTGGAG---ATAACA--GATTTGagagaatacagaaaataggaggaaaagtcaacaagaaataattcaggcagggcacagtggctcacgcctgtaatcccagtactttgggaggctgaggtgggaggatcacttgagccccggagttcaagg---------------------------ccac-agtaagctacgagtgcatcatcacta--------gagcctaggtgacagagtaagaccat-gtctctaa---aataataaaaattcagccagttgtggtggctcacacctgtaatcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30629761 726 + 173848474 agatcacaccaccgcactccagcctgcgcaacagagcgagactccatctctatt--aaaaaaa--------------------agagaaaaTCTATGGCTCTTTCTGTTCTCCCATAACCATACTCTAAATGCACTCTT-----TCTGTA----CCCAGTTTgtccctgctttaggactttgctgttccctctagctgatgtgatcttagaccttccctctcaccattcagatttcagctctcatgccatcttctcagggaactcccttctgatcacacattataaaatagatactaggtcactatctat--cagacttatttcacttccttgcatagtgc-taattac--tttttt---------------t----tttcaattttaacatactgcctgtcaccatttgctggaatataacctccaagagtgcag-aactttgttaaccttatcactgttgtaacctagaaacatcctggcacatcacgggtacttaataaatGAATTCAGGAGACATATGAAGCCTGGAG---ATAACA--GATTTGagagaatacagaaaataggaggaaaagtcaacaagaaataattcaggcagggcacagtggctcacgcctgtaatcccagtactttgggaggctgaggtgggaggatcacttgagccccggagttcaagg---------------------------ccac-agtaagctacaagtgcatcatcacta--------gagcctaggtgacagagtaagaccat-gtctctaa---aataataaaaattcagccagttgtggtggctcacacctgtaatcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     337519 732 +   2037526 agatcacgccaccgcactccagcctgggcaacagagcaagactccatctctatt-taaaaaaa--------------------agagaaaaTCTATGGCTCTTTCTGTTCTCCCACAACCATACTCTAAATGCACTCTT-----TCTGTA----CCCAGTTTgtccctgctttaggactttgctgttccctctagctgatgtgatcttagaccttccctctcaccattcagatttcagctctcatgccatcttctcagggaactcccttctgatcacacattataaaatagatactaggtcactatctatcacagacttatttcacttccttgcatagtgc-taattactttttttt---------------t----tttcaatgttaacatactgcctgtcaccatttgctggaatataacctccaagagtgcag-aactttgttaaccttatcactgttgtaacctagaaacatcctggcacatcacgggtacttaataaatGAATTCAGGAGACATATGAAGCCTGGAG---ATAACA--GATTTGagagaatacagaaaataggaggaaaagtcaacaagaaataattcaggcagggcacagtggctcacgcctgtaatcccagtactttgggaggctgaggtgggaggatcacttgagccccggagttcaagg---------------------------ccacaagtaagctacgagtgcatcatcacta--------gagcctaggtgacagagtaagaccat-gtctctaa---aataataaaaattcagccagttgtggtggctcacacctgtaatcc
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30891113 752 + 172585720 agattgcgccactgcactccagcctgggcaacagagcaagactccgtctctacttaaaaaaaaaaaacaaaacaaacaaaca-aaaaaaaacctatggctctttctgttctcccatacccatactctaaatgcagtctt-----tttgta----cc--gtttgtccctgctgtaggactttgctgttccctctagctgatgtgatcttagaccttccctctcactattcagatttcagctctcatgccgtcttctcagggaactcctctctgatcacacattataaaatagaaaataggtcaccatctatcacagacttctttcagtttcctgcatagtac-taattac--tttttt---------------ttttctttcaattttaacgtattgcctgtcaccatctgccggaatataaactccatgagtgcagaaacattgttaaacttagcactgttgtaacctagaaacatcctggcacatcacgggcacttaataaatgAATTCAGGAGACATACGAAGCCTGGAG---ATAACA--GATTTGAAAGAACAGAGAAAACAGGGGGAAAAGTCAACAAGAAATAATTCAggctgggtgcagtggctcacacctgtaatcccagcactttggaaggccgaggtgggaggatcacttgagcccgggagttcaagg---------------------------ccac-agtaagctacgagtgcaccacaacta--------gagcctaggtgacagagcaagaccat-atctctaa---aataataaaaattcagccagttgtggtggctcacacctgtaatcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30180592 753 - 170955103 agattgcgccactgcactccagcctgggcaacagagcaagactccgtctctacttaaaaaaaaaaaacaaaaaCAACAACAACAAAAAAAACCTATGGCTCTTTCTGTTCTCCCATACCCATACTCTAAATGCAGTCTT-----TTTGTA----CC--GTTTGTCCCTGCTGTAGGACTttgctgttccctctagctgatgtgatcttagaccttccctctcactattcagatttcagctctcatgccgtcttctcagggaactcctctctgatcacacattataaaatagataataggtcaccatctatcacagacttctttcagtttcctgcatagtac-taattac--tttttt---------------ttttctttcaattttaacgtattgcctgtcaccatctgctggaatataaactccatgagtgcagaaacattgttaaacttagcactgttgtaacctagaaacatcctggcacatcacgggcacttaataaatGAATTCAGGAGACATACGAAGCCTGGAG---ATAACA--GATTTGAAAGAACAGAGAAAACAGGGGGAAAAGTCAACAAGAAATAATTCAggctgggtgcagtggttcacgcctgtaatcccagcactttgggaggccgaggtgggaggatcacttgagcccaggagttcaagg---------------------------ccac-agtaagctacgagtgcaccacaacta--------gagcctaggtgacagagcaagaccgt-atctctaa---aataataaaaattcagccagttgtggtggctcacacctgtaatcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     429455 748 +   1495729 agatcgtgaaactgcactccagcctgggcaacagagcaagactccgtctcta-ttaaaaaaaataaataaa---accaaaaaccaaaaaaacctatggctctttctgttctcccatacccatactctaaatgcagtctt-----ttcgta----cccagtttgtcactgctgtaggactttgctgttccctctagctgatgtgatcttagaccttccctctcactattcagatttcagctctcatgccatcttcttagggaactcctctctgatcacacattataaaatagataataggtcaccatctatcacagacttctttcagttacctgcagagtac-taattac--tttgt---------------------tttcaattttaacgtattgcctgtcaccatctgctgtaatataaactccatgagtgcagaaacgttgttaaacttagcactgttgtaacctagaaacatcctggcacatcacgggcacttaataaaCGAATTCAGGAGACATATGAAGCCTAGAG---ATAACGTTGATTTCAAAGAACAGAGAAAACAGGGGGAAAAGTCAACAAGAAATAATTCAggctgggcgcagtggctcacacctgtaatcccagcacttcgggaggctgaggtgggaggatgacttgagcccgggagttcaagg---------------------------ccac-agtaagctacgagtgcaccacaacta--------gagcctaggtgacagagcaagattgtaatctctaa---aataataaaaattcagccagttgtggtggctcaagcctgtaatcc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     533099 746 -    863181 agatcgtgaaactgcactccagcctgggcaacagagcaagactccgtctctattaaaaaaataataataaa---accaaaaaccaaaaaaacctatggctctttctgttctcccatacccatactctaaatgcagtctt-----ttcgta----cccagtttgtcactgctgtaggactttgctgttccctctagctgatgtgatcttagaccttccctctcactattcagatttcagctctcatgccatcttctcagggaactcctctctgatcacacattataaaatagataataggtcaccatctatcacagacttctttcagtttcctgcatagtac-taattac--tttgt---------------------tttcaattttaacgtattgcctgtcaccatctgctgtaatataaactccatgagtgcagaaacgttgttaaacttagcactgttgtaacctagaaacatcctggcacatcacgggcacttaataaaCGAATTCAGGAGACATATGAAGCCTAGAG---ATAACA--GATTTCAGAGAACAGAGAAAACAGGGGGAAAAGTCAACAAGAAATAATTCAggctgggcgcagtggctcacacctgtaatcccagcacttcgggaggctgaggtgggaggatgacttgagcctgggagttcaagg---------------------------ccac-agtaagctacgagtgcaccacaacta--------gagcctaggtgacagagcaagattgt-atctctaa---aataataaaaattcagccagttgtggtggctcaagcctgtaatcc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29679886 739 -  71996105 agattgcgccactgcactccagcctgggcaacagagcaagactccgtctctacttaaaaaaaa-----------aacaaaacaaacaaaaacctatggctctttctgttctcccatacccatactctaaatgcagtctt-----tttgta----cc--gtttgtccctgccgtaggactttgctgttccctctagctgatgtgatcttagaccttccctctcactcttcagatttcagctctcatgccgtcttctcagggaactcctctctgatcacacattataaaatagataataggccaccatctatcacagacttctttcagtttcctgcatagtac-taattaa---ttttt---------------ttttctttcaattttaacgtattgcctgtcaccatctgctggaatataaactccatgagtgcagaaacgttgttaaacttagcactgttgtaacctagaaacatcctggcacatcacgggcacttaataaatGAATTCAGGAGACATACGAAGCCTGGAG---ATAACA--GATTTGAAAGAACAGAGAAAAC--GGGGAAAAGTCAACAAGAAATAATTCAggctgggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggtgggaggatcacttgagcccgggagttcaaga---------------------------ccac-agtaagctacgagtgcaccacaacta--------gagcctaggtgacagagcaagaccgt-atctctaa---aataataaaaattcagccagttgtggtggctcacacctgtaatcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     415346 740 -    735854 agattgcgccactgcactccagcctgggcaacagagcaagactccgtctctacttaaaaaaaa--------------aaaaaaaaaaaaaaCCTATGGCTCTTTCTGTTCTCCCATACCCATACTCTAAATGCAGTCTT-----TTTGTA----CC--GTTTGTCCCTGCTGTAGGACTTTGCTGTTCCCTCTAGCTGATGTGATCTTAGACCTTCCCTCTCACTATTCAGATTTCAGCTCTCATGCCGTCTTCTCAGGGAACTCCTCTCTGATCACACATTATAAAATAGAAAATAGGTCACCATCTATCACAGACTTCTTTCAGTTTCCTGCACAGTAC-TAATTAC-TTTTTTT---------------TTTTCTTTCAATTTTAACGTATTGCCTGTCACCATCTGCTGGAATATAAACTCCATGAGTGCAGAAACGTTGTTAAACTTAGCACTGTTGTAACCTAGAAACATCCTGGCACATCACGGGCACTTAATAAATGAATTCAGGAGACATACGAAGCCTGGAG---ATAACA--GATTTGAAAGAACGGAGAAAACAGGGGGAAAAGTCAACAAGAAATAATTCAggctgggtgcagtggctcacgcctgtaattccagcactttgggaggccgaggtgggaggatcatttgagcccgggagttcaagg---------------------------ccac-agtaagctacgagtgcaccacaacta--------gagcctaggtgacagagcaagaccgt-atctctaa---aataataaaaattcagccagttgtggtggctcacacctgtaatcc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     321950 747 -   1829203 agatcacgaaactgcactccagcctgggcaacggagcaagactctgtctctattttaaaaaaa---acaaa---aacaaaaa-caaaaaaacctatggctctttctgttctcccatacccatgctctaaatgcagtctt-----tttgta----cccagtttgtccctgccgtaggactttgctgttccctctagctgatgtgatcttagaccttccctctcactattcagatttcagctctcatgccatcttctcagggaactcctctctgatcacacattataaaatagataatagatcaccatctatcacagacttctttcagtttcctgcatagtac-taattac--tttttt---------------tttt-tttcaattttaacgtattgcctgtcaccatctgctggaatataaactccatgagtgcagaaacgttgttaaagttagcactgttgtaacctagaaacatcccggcacatcacgggcacttaataaatGAATTCAGGAGACATATGAAGCCTAGAG---ACAACA--GATTTGAAAGAACAGAGAAAATAGGGGGAAAAGTCAACAAGAAATAACTCAggctgggcgtagtggctcacgcctgtaatcccagcactttgggaggccgaggtgggagtatcacttgagcccgggagttcaagg---------------------------acac-agtaagctacgagtgcaccacaacta--------gagcctaggtgacagagcaagatcgt-atctctaa---aataataaaaattcagccagttgtggtggctcatgcctgtaatcc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30511262 743 + 171630274 agatcgcaccactgtactccagcctgggcaacagaatgagactctgtctc------aaaaaaa--------------acaaa-aacaaAAAGCTATGGCTCTTTCTGTTCTGCCATAACCATACTCTAGATGCAGTCCTAGGAATGTGTAGGGTCCCACTTTGTCCCTGCTTTAGGACTTTGCCA-TCCCTCCCGCTGGTGTGATCTTAGACCTTCCCTCTCAC---------------------GCC--CTTCTCAGGGAACTCCTTTCTGATCACACATTATAAAATAGATACTGGGTGACTA----TTACAGACTTATTTCAGTTCCTTGCACAGTGC-TAatttt--tttttt------------------------aattttaacctattgcctgtcaccatctgctggaatataaactccataagtgtagaaactttgttaaccttatcactgttgtaacctagaaacatcctggcacatcatgggtacttaataaatGAATTCAGGAGACTAATGAAGCCTGGAG---ATAACA--GATTTGAGAGAATAGAGAAAAT-GGAGGGAAAGTCAACGTGAAGTAATTCAggcagggcacagtggcttacccctgtaatcccagcactttgggaggccaaggtgggaggatcacttgagtccaggagttcaaggccCCAGTGAGCCACAAGTGTACCAACACCCC-AGTGAGCCACAAGTGTACCAACACCAGATCCTAGGATcctaggtgacagagcaagcccat-gtctctgaaataataataataattcagccagttgtcgtggctcaggcctgtaatcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           314939 755 +    515838 agatcacaccactgtactccagcctgggtaacagaatgagactctgtctc------aaaaaaa--------------caaaa-acaaaaaaactatggctctttctgttctgccataaccatactctagatgtagtctt-----tctgta-----cccgtttgtccctgctttaggactttgctg-tccctcccactggtgtgatcttagaccttcactctcaccattcagatttcagctctcatgccatcttctcagggaactcctttctgattacacattataaaatagatactgggtcactatctgttacagacttatttcagttccttgcatagtgcgttgtttt--ttttttgttttgttttggttttgttttttcaattttaatgtattgcctgtcaccatctgctggaatataaactccatgagcgtagaaactttgttaaccttatcactgttgtaacctagaaacatcatggcacatcacaggtacttaataaatGAATTCAGGAGACTAATGAAGCCTGGAGATTATAACA--GATTTGAGAGTATAGAGAAAAT-GGAGGGAAAGTCAACATGAAATAATTCAggcagggaacagtggcttacgcctgtaatcacagcactttgggaggccgaggtgggaggatcacttgagtccaggagttcaagg---------------------------cccc-agtgagctacaagtgtaccaacactagatcataggatcctaggtgacatagcaagcccat-gtccctga------aataataattaagccagttgtggtggctcaggcctgtaatcc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     945703 731 -   1771730 agatcacaccactgtactccagcctgggcaccagagtgagactctgtctc------aaaaaaa--------------caaaa-acaaaAAAACTATGGCTGTTTCTGTTCTGCCATAACCATACTCCAGGTGCAGTCTT-----TCTGTA----CCCAGTTTGTCCCTGCGTTAGGACTTTGCCG-TCCCTCCCGCTGGTGTGATCTTAGA-CTtccctcttaccattcagatttcagctcccacgccatcttctcagggaactcctttctgatcacacattataaaatagatactggatcactatctattacagagttatttcagttccttgcatagtgc-taatttt--tttttt-----------------------caattttaacgtattgcctgtcaccatctgctggaatataaactccatgagtgtagaaactttgttaaccttatcactgttgtaacctagaaacatcctggcacatcacgggtacttaataaatGAATTCAGGAGACTAATGAAGCCTGGAGATTATAATA--GATTTGAGagaatagagaaaat-ggagggaaagtcaacatgaaataattcaggcagggcacagtggcttacgcctgtaatcccagcactttgggatgctgaggtgggaggatcacttgagaccaggagttcaaag---------------------------cccc-agtgagctacaagtgtaccaccactaggccctaggatcctaggtgacagagcaagcccat-gtccctga------aataataattaagccagttgtggtggctcaggcctgtaatcc
i cebCap1.NW_016107755v1   I 5954 C 0
s aotNan1.NW_018496901v1     129561 727 -    486031 agatcacaccactgtactccagcctggacaacagaatgagactctgtctc------aaaaaaa--------------caaaa-ac-aaaaagctatggctctttctgttctgccataaccatactctagaggcagtctt-----tctgta------ctgtttgtccctgctttaggactttgccg-tccctcctgctggtgtgatcttagaccttctctctcaccattcagatttcagctctcacaccatcttctcagggaactcctttctgatcacacattgtaaaatagatactgggtgactatctattacagacttatttcagttccttgcatagtgc-taatttt--ttattt------------------------tattttaacgtattgcttgtcaccatctgctggaatataaactccatgagtgtagaaactttgttaaccttatcactgttgtaacctagaaacatcctggcgcatcacgggtacttaataaatgAATTCAGGAGACTAATGAAGCCTGGAG---ATAATA--GATTTGAGAGAATAGAGAAAAT-GGAGGGAAAGTCAACATGAAATAATTCAggcagggcacagtggcttacgcctgtaatc-cagcactttgggaggccaaggtgggaggatcacttgagtccaggagttcaagg---------------------------cccc-agtaagctacaagtgtaccaccactagatcctaggatcctaggtgacagagcaagcccat-gtctctga---aataataataattcagccagttgtggtggctcaggcctgtaatcc
i aotNan1.NW_018496901v1   I 8253 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     317388 63854 -   1411461 I
e canFam3.chr35            26365864 20190 +  26524999 I
e otoGar3.GL873550           352535 19402 +  18854210 I
e nomLeu3.chr1a            48077667 4066 - 122973662 I

a score=31710.000000
s hg38.chr6_GL000254v2_alt  1527430 3 +   4827813 cag
s panTro5.chr6             30396186 3 + 175400573 cag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30630487 3 + 173848474 cag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     338251 3 +   2037526 cag
i gorGor5.CYUI01015528v1   C 0 I 1420
s nomLeu3.chr1a            75002957 3 + 122973662 CAT
i nomLeu3.chr1a            I 4066 C 0
s rheMac8.chr4             30891865 3 + 172585720 cag
i rheMac8.chr4             C 0 I 1431
s macFas5.chr4             30181345 3 - 170955103 cag
i macFas5.chr4             C 0 I 1431
s macNem1.NW_012012100v1     430203 3 +   1495729 cag
i macNem1.NW_012012100v1   C 0 I 1430
s cerAty1.NW_012002535v1     533845 3 -    863181 cag
i cerAty1.NW_012002535v1   C 0 I 1426
s chlSab2.chr17            29680625 3 -  71996105 cag
i chlSab2.chr17            C 0 I 1427
s manLeu1.NW_012107142v1     416086 3 -    735854 cag
i manLeu1.NW_012107142v1   C 0 I 1428
s colAng1.NW_012115577v1     322697 3 -   1829203 cag
i colAng1.NW_012115577v1   C 0 I 1444
s calJac3.chr4             30512005 3 + 171630274 cag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           315694 3 +    515838 cag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     946434 3 -   1771730 cag
i cebCap1.NW_016107755v1   C 0 I 1419
s aotNan1.NW_018496901v1     130288 3 -    486031 cag
i aotNan1.NW_018496901v1   C 0 I 1420
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     317388 63854 -   1411461 I
e canFam3.chr35            26365864 20190 +  26524999 I
e otoGar3.GL873550           352535 19402 +  18854210 I

a score=12000.000000
s hg38.chr6_GL000254v2_alt  1527433 1 +   4827813 c
s panTro5.chr6             30396189 1 + 175400573 c
i panTro5.chr6             C 0 I 1421
s panPan2.chr6             30630490 1 + 173848474 c
i panPan2.chr6             C 0 I 1421
s gorGor5.CYUI01015528v1     339674 1 +   2037526 c
i gorGor5.CYUI01015528v1   I 1420 C 0
s nomLeu3.chr1a            75002960 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30893299 1 + 172585720 c
i rheMac8.chr4             I 1431 C 0
s macFas5.chr4             30182779 1 - 170955103 c
i macFas5.chr4             I 1431 C 0
s macNem1.NW_012012100v1     431636 1 +   1495729 c
i macNem1.NW_012012100v1   I 1430 C 0
s cerAty1.NW_012002535v1     535274 1 -    863181 c
i cerAty1.NW_012002535v1   I 1426 C 0
s chlSab2.chr17            29682055 1 -  71996105 c
i chlSab2.chr17            I 1427 C 0
s manLeu1.NW_012107142v1     417517 1 -    735854 c
i manLeu1.NW_012107142v1   I 1428 C 0
s colAng1.NW_012115577v1     324144 1 -   1829203 c
i colAng1.NW_012115577v1   I 1444 C 0
s calJac3.chr4             30512008 1 + 171630274 c
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           315697 1 +    515838 c
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     947856 1 -   1771730 c
i cebCap1.NW_016107755v1   I 1419 C 0
s aotNan1.NW_018496901v1     131711 1 -    486031 c
i aotNan1.NW_018496901v1   I 1420 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     317388 63854 -   1411461 I
e canFam3.chr35            26365864 20190 +  26524999 I
e otoGar3.GL873550           352535 19402 +  18854210 I

a score=54518.000000
s hg38.chr6_GL000254v2_alt  1527434 6 +   4827813 aAGGCA
s panTro5.chr6             30397611 6 + 175400573 aaggca
i panTro5.chr6             I 1421 C 0
s panPan2.chr6             30631912 6 + 173848474 aaggca
i panPan2.chr6             I 1421 C 0
s gorGor5.CYUI01015528v1     339675 6 +   2037526 aaggca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75002961 6 + 122973662 AAGGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30893300 6 + 172585720 aaggca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30182780 6 - 170955103 aaggca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     431637 6 +   1495729 aaggca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     535275 6 -    863181 aaggca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29682056 6 -  71996105 aaggca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     417518 6 -    735854 aaggca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     324145 6 -   1829203 aaggta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30512009 6 + 171630274 taggca
i calJac3.chr4             C 0 I 1410
s saiBol1.JH378341           315698 6 +    515838 tagtca
i saiBol1.JH378341         C 0 I 2310
s cebCap1.NW_016107755v1     947857 6 -   1771730 aaggcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     131712 6 -    486031 aaggca
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     317388 63854 -   1411461 I
e canFam3.chr35            26365864 20190 +  26524999 I
e otoGar3.GL873550           352535 19402 +  18854210 I

a score=37457.000000
s hg38.chr6_GL000254v2_alt  1527440 4 +   4827813 AACA
s panTro5.chr6             30397617 4 + 175400573 aaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30631918 4 + 173848474 aaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     339681 4 +   2037526 aaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75002967 4 + 122973662 AGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30893306 4 + 172585720 aaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30182786 4 - 170955103 aaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     431643 4 +   1495729 aaca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     535281 4 -    863181 aaca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29682062 4 -  71996105 aaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     417524 4 -    735854 aaca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     324151 4 -   1829203 aaca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30513425 4 + 171630274 aaca
i calJac3.chr4             I 1410 C 0
s cebCap1.NW_016107755v1     947863 4 -   1771730 aaca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     131718 4 -    486031 aaca
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     317388 63854 -   1411461 I
e canFam3.chr35            26365864 20190 +  26524999 I
e saiBol1.JH378341           315704 2310 +    515838 I
e otoGar3.GL873550           352535 19402 +  18854210 I

a score=212646.000000
s hg38.chr6_GL000254v2_alt  1527444 22 +   4827813 CAAAATAGTTTGCTGAAAGGTA
s panTro5.chr6             30397621 22 + 175400573 caaaatagtttgctgaaaggta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30631922 22 + 173848474 caaaatagtttgctgaaaggta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     339685 22 +   2037526 caaaatagtttgctgaaaggta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75002971 22 + 122973662 CAAAATAGTTTGCTAAAAGCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30893310 22 + 172585720 caaaacagtttgctaaaaggta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30182790 22 - 170955103 caaaacagtttgctaaaaggta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     431647 22 +   1495729 caaaacagtttgctaaaaggta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     535285 22 -    863181 caaaacagtttgctaaaaggta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29682066 22 -  71996105 caaaacggtttgctaaaaggta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     417528 22 -    735854 caaaacagtttgctaaaaggta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     324155 22 -   1829203 caaaacagtttgctaaaaggta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30513429 22 + 171630274 caaaacagtttgctaaacagta
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     947867 22 -   1771730 caaaacagtttgctaaaaagta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     131722 22 -    486031 caaaacagtttgctaaaaagta
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     381242 22 -   1411461 caaaatagtctgccaaaaagga
i proCoq1.NW_012149775v1   I 63854 C 0
e micMur3.chr6               386557 38559 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e canFam3.chr35            26365864 20190 +  26524999 I
e saiBol1.JH378341           315704 2310 +    515838 I
e otoGar3.GL873550           352535 19402 +  18854210 I

a score=377107.000000
s hg38.chr6_GL000254v2_alt  1527466 34 +   4827813 TGAACTGGGTCTTTGGAGGGAGGTATGGGG-CAGG
s panTro5.chr6             30397643 34 + 175400573 tgaactgggtctttggagggaggaatgggg-cagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30631944 34 + 173848474 tgaactgggtctttggagggaggaatgggg-cagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     339707 34 +   2037526 tgaactgggtctttggagggaggaatgggg-cagg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75002993 34 + 122973662 TGAACTGGGTCTTTGGACGGAGGAATGGGG-CAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30893332 34 + 172585720 tgaactgggtctttggagggaggaatgggg-cagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30182812 34 - 170955103 tgaactgggtctttggagggaggaatgggg-cagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     431669 34 +   1495729 tgaactgggtctttggagggaggaatgggg-cagg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     535307 34 -    863181 tgaactgggtctttggagggaggaatgggg-cagg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29682088 34 -  71996105 tgaactgggtctttggagggaggaatgggg-cagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     417550 34 -    735854 tgaactgggtctttggagggaggaatgggg-cagg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     324177 35 -   1829203 tgaactgggtctttggagggaggaatggggtcagc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30513451 34 + 171630274 tgaactgggtcttttgggggaggaataggg-cagg
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     947889 34 -   1771730 tgaactgggtcttttggaggaggaacaggg-cagg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     131744 34 -    486031 tgaactgggtcttttgggggagaaataggg-cagg
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               425116 33 + 123392446 tgaactgggtctctagggacaggaatgggg-ca-g
i micMur3.chr6             I 38559 C 0
s proCoq1.NW_012149775v1     381264 34 -   1411461 tgaactgggtctctagggagaggaatgggg-cagg
i proCoq1.NW_012149775v1   C 0 C 0
e mm10.chr17               58126605 1382 -  94987271 I
e canFam3.chr35            26365864 20190 +  26524999 I
e saiBol1.JH378341           315704 2310 +    515838 I
e otoGar3.GL873550           352535 19402 +  18854210 I

a score=635070.000000
s hg38.chr6_GL000254v2_alt  1527500 57 +   4827813 GAAATGTTCCTATTTGTAAGAAGCACTGTAGAA--AGTTTACCATATGTGCAAGTAGAG
s panTro5.chr6             30397677 57 + 175400573 gaaatgttcctatttgtaagaagcactgtagaa--AGTTTACCATATGTGCAAGTAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30631978 57 + 173848474 gaaatgttcctatttgtaagaagcactgtagaa--AGTTTACCATATGTGCAAGTAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     339741 57 +   2037526 gaaatgttcctatttgtaagaagcactgtagaa--AGTTTACCATATGCGCAAGTAGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75003027 57 + 122973662 GAAATGTTCCTATTTGTAAGACGCACTGTAGAA--AGTTTACCATATGTGCAAGTATAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30893366 59 + 172585720 gaaatgtgcctatttgtaagaagcactgtagaaatagtttacCATATATGCAAGTATAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30182846 59 - 170955103 gaaatgtgcctatttgtaagaagcactgtagaaatagtttaccatatatgcaagtatag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     431703 54 +   1495729 gaaatgtgcctatttgtaagaagcactgtagaaatagtttacCATATATGC-----TAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     535341 59 -    863181 gaaatgtgcctatttgtaagaagcactgtagaaatagtttaccatatatgcaagtatag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29682122 59 -  71996105 gaaatgtgcctatttgtaagaagcactgtagaaatagtttaccatatatgcaagtatag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     417584 59 -    735854 gaAATGTGCCTATTTGTAAGAAGCACTGTAGAAATAGTTTACCATATATGCAAGTATAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     324212 59 -   1829203 aaaatgtgcctatttgtaagaagcactgtagaaatagtttaccatatatgcaagtacag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30513485 59 + 171630274 gaaatgttcgtatttgtaagaagtattatagaaatcgcttaccatatgtgcaagtatag
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     947923 59 -   1771730 gaaacgttcctatttgtaagaagtactatagaaattgtttaccatatgtgcaagtatag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     131778 59 -    486031 gaaatgttcctatttgtaaaaagtactatagaaatcgcttaccatatgtgcaagtatag
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               425149 59 + 123392446 ggaatgttcttttttgtaataagcactgtagaaatagttaacCATATGTGTAAGCATAG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     381298 59 -   1411461 ggaatgttcttttttgtaataagcattgtagaaatagttaaccatatgtgcaagtatag
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           371937 57 +  18854210 GAAATGT--TTTTTTATAATAAGCTTTGTAGAAATAATTGCCTATATGTGCAAGTATAG
i otoGar3.GL873550         I 19402 C 0
e mm10.chr17               58126605 1382 -  94987271 I
e canFam3.chr35            26365864 20190 +  26524999 I
e saiBol1.JH378341           315704 2310 +    515838 I

a score=1595015.000000
s hg38.chr6_GL000254v2_alt  1527557 157 +   4827813 TT-A-TACAAAATG-AAAAACTATGAATATAAAAAATAAAAAGGGAAAATTTACATGAGCCCACAACTTAGAGAACAGAGAGGAAATATGCTCTTTGCCACTAGCGTAATTTTACAGGTAGTTTCGTATAATCCTCCCTTTTCCATCTTTAAGATGGCAA
s panTro5.chr6             30397734 155 + 175400573 TT-A-TACAAAACG-AAAAACTATGAATATAAAAAATAAAAAGGGAAAATTTACATGAGCCCACAACTTAGAGAACAGAG--GAAATATGCTCTTTGCCACTAGCGTAATTTTACAGGTAGTTTCGTATAATCCTCCCTTTTCCATCTTTAAGATGGCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30632035 155 + 173848474 TT-A-TACAAAACG-AAAAACTATGAATATAAAAAATAAAAAGGGAAAATTTACATGAGCCCACAACTTAGAGAACAGAG--GAAATATGCTCTTTGCCACTAGCGTAATTTTACAGGTAGTTTCGTATAATCCTCCCTTTTCCATCTTTAAGATGGCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     339798 157 +   2037526 TT-A-TACAAAATG-AAAAACTATGAATATAAAAAATAAAAAGGGAAAATTTACATGAGCCCACAACTTAGAGAACAGAGAGGAAATATGCTCTTTGCCACTAGCGTAATTTTACAGTTAGTTTCGTATAATCCTCCCTTTTCCATCTTTAAGATGGCAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75003084 157 + 122973662 TT-A-TACAAAATG-AAAAACTATGAATATAAAAAATAAAAACAGAAAACTTACATGAGCCCACAAATTAGAGGACAGAGAGGAAATATGCTTTTTGCCACTAGTGTAATTTTACAGGTAGTTTCATATAATCCTCCCTTTTCCATCTTTAAGATGGCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30893425 154 + 172585720 TT-A-TAaaaaact-aaaaactatgaatataaaaaataaaaagggaaaactTAC--GAGTCCACAAATGAGAGAACACAGAAGAAATATGCTCTTTGCCACTAGCGTAATTTTACAGGTAGTTTTGTATAATCCTCCCTTTTCCATC-TTAAGATGGCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30182905 155 - 170955103 tt-a-taaaaaact-aaaaACTATGAATATAAAAAATAAAAAGGATAAACTTAC--GAGTCCACAAATGAGAGAACAGAGAAGAAATATGCTCTTTGCCACTAGCGTAATTTTACAGGTAGTTTTGTATAATCCTCCCTTTTCCATCTTTAAGATGGCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     431757 155 +   1495729 TT-A-TAaaaaact-aaaaactatgaatataaaaaataaaaaggataaactTAC--GAGTCCACAAATGAGAGAACAGAGAAGAAATATGCTCTTTGCCACTAGCGTAATTTTACAGGTAGTTTTGTATAATCCTCCCTTTTCCATCTTTAAGATGGCAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     535400 155 -    863181 tt-a-taaaaaact-aaaaACTATGAATATAAAAAATTAAAAGGATAAACTTAC--GAGTCCACAAATGAGAGAACAGAGAAGAAATATGCTCTTTGCCACTAGCGTAATTTTACAGGTAGTTTTGTATAATCCTCCCTTTTCCATCTTTAAGATGGCAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29682181 154 -  71996105 tt-a-taaaaaact-aaaaACTATGAATATAAAAAATAAAAA-GGAAAACTTAC--GAGTCCACAAATGAGAGAACAGAGAAGAAATATGCTCTTTGCCACTAGCGTAATTTTACAGATAGTTTTGTATAATCCTCCCTTTTCCATCTTTAAGATGGCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     417643 155 -    735854 TT-A-TAAAAAACT-AAAAACTATGAATATAAAAAATAAAAAGGGAAAACTTAC--GAGTCCACAAATGAGAGAACAGAGAAGAAATATGCTCTTTGCCACTAGCGTAATTTTACAGGTAGTTTTGTATAATCCTCCCTTTTCCATCTTTAAGATGGCAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     324271 151 -   1829203 tt-a-taaaaaact-aaaaGCTATGAATACAAAAAATAAAAAGGGAAAACTTAC--GAGTCCACAAATGAGAGAACAGAG----AATATGCTCTTTGCCACTAGCGTAATTTTACAGGTAGTTTTGTATAATCCTCCCTTTTCCATTTTTAAGATGGCAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30513544 151 + 171630274 ttca-taaaaaact-aaaaACTATGAATATAAAAAATAAAAACGGAAAACTTATGTGAGTCCA-----TAGAGAACAGAGAGGAAATACTC--TTTGCCTGTAGTGTAATTTTAGAGGTAGTTCTGTATAATCCTCCCTTTTCCATCTTTAAGATGGCAA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     947982 149 -   1771730 ttca-taaaaaact-aaaaACTATGAATATAAAAAATATAAAGGGAAAACTTACATGAGTCCA-----TAGAGAACAGAGAGGAAATACTC----TGTCACTAGTATAATTTTAGAGGTAGTTCTGTATAATCCTCGCTTTTCCATCTTTAAGATGGCAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     131837 148 -    486031 ttca-taaaaaact-aaaaACTATTAATATAAAAAATAAAAAGGGAGAACTTACATGAGTCCA-----TAGAGAACAGAGAGGCAATACTCTCTTTGCCAC-----TAATTTTAGAGGTAGTTCTGTATAATCCTCCCTTTTCCATCTTTAAGATGGCAA
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               425208 156 + 123392446 TTCa-taaataact-aaaaaatatgaatataaaaaatataaataaaaaacttaaatGAGTCCAC-AAAGAGAATACAGGGTGGAAATATGCTCTTTGCCTCTAGTATAATCTTAGAGGTAGTTTTGTACGAT-CGCCCTTTTCCATCTTTAAGGTGGCAA
i micMur3.chr6             C 0 I 2
s proCoq1.NW_012149775v1     381357 156 -   1411461 ttca-taaaaaactaaaaAAATATGACTACAAAAAATACAAATAAAAAACTTAAATGAGTCCAC-AATGAGAGTATAGGGCGG-AATATGCTCTTCGCCTGTAGGGTAATCTTAGAGGTAGTCATGCACAAT-CTCCCTTTTCCATCTGTAAGATGGTAA
i proCoq1.NW_012149775v1   C 0 I 6
s otoGar3.GL873550           371994 152 +  18854210 TTCATTAAAAAACT-AAAACATATGAATATAAAAAATACAGAC------CTTAGATGAGTCCACAAATGAGAGTACACGGAGGAAATATGTTCTTTGCTTCTAGCACAAGCTTAGAGGCAGTTTTATACAAT-ATTCCTTTTCCATCTTTAAAATGGTAA
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26386054 140 +  26524999 TT-C-TAATAATTG-ACAAGTTCTGCATATCTGTATTTAGAAAGAAAAGTAGA---AAGAACAAAAGCTAAAG-ACGAAGAAGAATCATA------------AATGCGATCTTGGAGG-GGCTTTCTGTAATTCTTCCTTTTCTATTTTTAAAATGGCGA
i canFam3.chr35            I 20190 C 0
e mm10.chr17               58126605 1382 -  94987271 I
e saiBol1.JH378341           315704 2310 +    515838 I

a score=39712.000000
s hg38.chr6_GL000254v2_alt  1527714 3 +   4827813 TTT
s panTro5.chr6             30397889 3 + 175400573 TTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30632190 3 + 173848474 TTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     339955 3 +   2037526 TTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75003241 3 + 122973662 TTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30893579 3 + 172585720 TTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30183060 3 - 170955103 TTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     431912 3 +   1495729 TTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     535555 3 -    863181 TTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29682335 3 -  71996105 TTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     417798 3 -    735854 TTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     324422 3 -   1829203 TTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30513695 3 + 171630274 TTT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     948131 3 -   1771730 TTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     131985 3 -    486031 TTT
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               425366 3 + 123392446 TTT
i micMur3.chr6             I 2 I 1
s otoGar3.GL873550           372147 3 +  18854210 TTT
i otoGar3.GL873550         I 1 I 1
s canFam3.chr35            26386194 2 +  26524999 -TT
i canFam3.chr35            C 0 C 0
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     381513 6 -   1411461 I
e saiBol1.JH378341           315704 2310 +    515838 I

a score=3779.000000
s hg38.chr6_GL000254v2_alt  1527717 2 +   4827813 AA
s panTro5.chr6             30397892 2 + 175400573 AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30632193 2 + 173848474 AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     339958 2 +   2037526 AA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75003244 2 + 122973662 AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30893582 2 + 172585720 AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30183063 2 - 170955103 AA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     431915 2 +   1495729 AA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     535558 2 -    863181 AA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29682338 2 -  71996105 AA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     417801 2 -    735854 AA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     324425 2 -   1829203 AA
i colAng1.NW_012115577v1   C 0 C 0
s aotNan1.NW_018496901v1     131988 1 -    486031 -A
i aotNan1.NW_018496901v1   C 0 I 1
s micMur3.chr6               425370 1 + 123392446 A-
i micMur3.chr6             I 1 C 0
s otoGar3.GL873550           372151 1 +  18854210 A-
i otoGar3.GL873550         I 1 C 0
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     381513 6 -   1411461 I
e canFam3.chr35            26386196 0 +  26524999 C
e saiBol1.JH378341           315704 2310 +    515838 I
e cebCap1.NW_016107755v1     948134 0 -   1771730 C
e calJac3.chr4             30513698 0 + 171630274 C

a score=51891.000000
s hg38.chr6_GL000254v2_alt  1527719 6 +   4827813 AAAATC
s panTro5.chr6             30397894 6 + 175400573 AAAATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30632195 6 + 173848474 AAAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     339960 6 +   2037526 AAAATC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75003246 6 + 122973662 AAAATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30893584 6 + 172585720 AAAATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30183065 6 - 170955103 AAAATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     431917 6 +   1495729 AAAATC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     535560 6 -    863181 AAAATC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29682340 6 -  71996105 AAAATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     417803 6 -    735854 AAAATC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     324427 6 -   1829203 AAAATC
i colAng1.NW_012115577v1   C 0 C 0
s micMur3.chr6               425371 6 + 123392446 AAAATC
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           372152 6 +  18854210 AATATC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26386196 4 +  26524999 --AATC
i canFam3.chr35            C 0 C 0
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     381513 6 -   1411461 I
e saiBol1.JH378341           315704 2310 +    515838 I
e aotNan1.NW_018496901v1     131989 1 -    486031 I
e cebCap1.NW_016107755v1     948134 0 -   1771730 C
e calJac3.chr4             30513698 0 + 171630274 C

a score=17381.000000
s hg38.chr6_GL000254v2_alt  1527725 2 +   4827813 AG
s panTro5.chr6             30397900 2 + 175400573 AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30632201 2 + 173848474 AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     339966 2 +   2037526 AG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75003252 2 + 122973662 AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30893590 2 + 172585720 AG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30183071 2 - 170955103 AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     431923 2 +   1495729 AG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     535566 2 -    863181 AG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29682346 2 -  71996105 AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     417809 2 -    735854 AG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     324433 2 -   1829203 AG
i colAng1.NW_012115577v1   C 0 C 0
s micMur3.chr6               425377 2 + 123392446 AG
i micMur3.chr6             C 0 C 0
s canFam3.chr35            26386200 2 +  26524999 AG
i canFam3.chr35            C 0 I 215
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     381513 6 -   1411461 I
e saiBol1.JH378341           315704 2310 +    515838 I
e otoGar3.GL873550           372158 0 +  18854210 C
e aotNan1.NW_018496901v1     131989 1 -    486031 I
e cebCap1.NW_016107755v1     948134 0 -   1771730 C
e calJac3.chr4             30513698 0 + 171630274 C

a score=48648.000000
s hg38.chr6_GL000254v2_alt  1527727 7 +   4827813 AAAGGAC
s panTro5.chr6             30397902 7 + 175400573 AAAGGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30632203 7 + 173848474 AAAGGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     339968 7 +   2037526 AAAGGAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75003254 7 + 122973662 AAAGGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30893592 7 + 172585720 AAAGGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30183073 7 - 170955103 AAAGGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     431925 7 +   1495729 AAAGGAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     535568 7 -    863181 AAAGGAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29682348 7 -  71996105 AAAGGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     417811 7 -    735854 AAAGGAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     324435 7 -   1829203 AAAAAAC
i colAng1.NW_012115577v1   C 0 C 0
s micMur3.chr6               425379 7 + 123392446 AAAGGAC
i micMur3.chr6             C 0 I 234
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     381513 6 -   1411461 I
e canFam3.chr35            26386202 215 +  26524999 I
e saiBol1.JH378341           315704 2310 +    515838 I
e otoGar3.GL873550           372158 0 +  18854210 C
e aotNan1.NW_018496901v1     131989 1 -    486031 I
e cebCap1.NW_016107755v1     948134 0 -   1771730 C
e calJac3.chr4             30513698 0 + 171630274 C

a score=1494691.000000
s hg38.chr6_GL000254v2_alt  1527734 303 +   4827813 Tgctgggcgcgatggctcacgcctgtaatcccagcactttgggaggccgaggtgggcggatcatgaggtcaggagatcaagaccaacctggctaacatggtgaaaccccgtctctactaaaaatac--aaaaaaattagccgggcgtgatggcgggcgcctgtagttccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcagagcttgcagtgagccgagatggcgccactgcactccaaactgggagacagagtgagactccatctc---aaaaaaaaaaaaaaaaaaaaa
s panTro5.chr6             30397909 303 + 175400573 Tgctgggcgcgatggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcatgaggtcaggagatcaagaccaacctggctaacatggtgaaaccccgtctctactaaaaatac--aaaaaaattagccgggcgtgatggcgggcgcctgtagttccagctactcgggaggctgaggcaggagaatggcatgaacctgggaggcagagcttgcagtgagccaagatggcgccactgcactccaaactgggagacagagtgagactccatctc---aaaaaaaaaaaaaaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30632210 298 + 173848474 Tgctgggcgcgatggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcatgaggtcaggagatcaagaccaacctggctaacatggtgaaaccccgtctctactaaaaatac-aaaaaaaattagccgggcgtgatggcgggcgcctgtagttccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggcagagcttgcagtaagccaagatggcgccactgcactccaaactgggagacagagtgagactccatct---------acaaaaaaaaaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     339975 288 +   2037526 ggctgggcgcgatggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcatgaggtcaggagatcaagaccaacctggctaacatggtgaaaccccgtctctactaaaaatac--aaaaaaattagccgggcgtgatggcgggcgcctgtagttccagctactcgggaggctgaggcaggagaatggtgtgaacccaggaggcagagcttgcagtgagccaagatggcgccactgcactccaaactgggagacagagtgagactccatctc------------------aaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75003261 294 + 122973662 Tgccaggcgcgatggctcaggcctgtaatcccagcactttgggaggccgaggtgggtggatcacgaggtcgggagatcgagaccaacctggctaacacggtgaaaccccgtctctactaaaaatac--aaaaaaatcagccaggtgtggtggtgggcacctgtagttccagctactcgggaagctgaggcaggagaatggcgtgaacctgggaggcagagcttgcagtgagccgagatcatgccactgcactccagcctgggagacagagcgagactccatctc------------aaaaaaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30893599 294 + 172585720 TGTAgggcgcggtggctcacgcctgtaattccagcactttgggaggctgaggtggggggatcacgaggtcaggagatcgagaccatcttggctaacagcgtgaaaccccgtctctactaaaaatac-aaaaaaaattagccgggcatgatggcaggcgcctgtagtttcagctactcgggaggctgaggc---agaattccatgaacccaggaggcggagcttgcagtgaaccgagatcgcgccactgtactccagcctgggt----gagcgagactccgtctc------aaaaaaaaaaaaaaaata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30183080 291 - 170955103 Tgtcgggcgcggtggctcacgcctgtaattccagcactttgggaggctgaggtggggggatcacgaggtcaggagatcgagaccatcctggctaacagggtgaaaccccgtctctactaaaaatac-aaaaaaaattagccgggcatgatggcaggcgtctgtagtttccgctactcgggaggctgaggc---agaattccatgaacccaggaggtggagcttgcagtgagccgagatcgcgccactgtactccagcctgagt----gagcgagactccgtctc---------aaaaaaaaaaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     431932 294 +   1495729 Tgtcgggcgcggtggctcacgcctgtaattccagcactttgggaggctgaggtggggggatcacaagttcaggagatcgagaccatcctggctaacagggtgaaaccccgtctctactaaaaatac-aaaaaaaattagccgggcatgatggcaggcgtctgtagtttccgctactcgggaggctgaggc---agaattccatgaacccaggaggcggagcttgcagtgagccgagatcgcgccactgtactccagcctgagt----gagcgagactccgtctc------aaaaaaaaaaaaaaaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     535575 294 -    863181 Tgtcgggcgcggtggctcatgcctgtaattccagcactttgggaggctgaggtggggggatcacgaggtcaggagatcgagaccatcctggctaacagggtgaaaccccgtctctactaaaaatacaaaaaaaaattagccgggcatgatggcaggcgcctgtagtttcagctactcgggaggctgaggc---agaattccatgaacccaggaggcggagcttgtagtgagccgagatcgcgccactgtactccagcctgggt----gagcgagactccgtctc-------aaaaaaaaaaaaaaaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29682355 300 -  71996105 Tgtcgggcgcggtggctcacgcctgtaattccagcactttgggaggctgaggtggggggatcacgaggtcaggagattgagaccatcctggctaacagggtgaaaccccgtctctactaaaaatac-aaaaaaacttagccgggcatgatggcaggcgcctgtagtttcagctactcaggaggctgaggc---agaattccatgaacccaggaggcggagcttgcagtgagccgagatcgcgccactgtactccagcctgggt----gagcgaggctccgtctcaaaaaaaaaaaaaaaaaaaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     417818 281 -    735854 Tgtcgggcgcggtggctcacgcctgtaattccagcactttgggaggctgaggtggggggatcacgaggtcaggagatcgagaccatcctggctaacagggtgaaac----------ttaaaaatac-aaaaaaaattagccgggcatgatggcaggcgcctgtagtttcagctactcgggaggctgaggc---agaattccatgaacccaggaggctgagcttgcagtgagccgagatcacgccactgtactccagcctgggt----gagcgagactccgtctc---------aaaaaaaaaaaaaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     324442 287 -   1829203 TGTTgggtgcggtggctcatgcctgtaattccagcactttgggaggctgaggcggggggatcacaaggtcaggagattgagaccatcctggctaacatggtgaaaccccgtctctactaaaagtga-----aaaattagccgggcacagtggcgggcacctgtagtttcagctactcgggagactgaggc---agaacgccatgaacccaggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggtgacagagcgagactccatctc-------------aaaaaaaaaaa
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               425386 234 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     381513   6 -   1411461 I
e canFam3.chr35            26386202 215 +  26524999 I
e saiBol1.JH378341           315704 2310 +    515838 I
e otoGar3.GL873550           372158   0 +  18854210 C
e aotNan1.NW_018496901v1     131989   1 -    486031 I
e cebCap1.NW_016107755v1     948134   0 -   1771730 C
e calJac3.chr4             30513698   0 + 171630274 C

a score=7098.000000
s hg38.chr6_GL000254v2_alt  1528037 1 +   4827813 a
s panTro5.chr6             30398212 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30632508 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     340263 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75003555 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30893893 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30183371 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     432226 1 +   1495729 a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     535869 1 -    863181 a
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29682655 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     418099 1 -    735854 a
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     324729 1 -   1829203 a
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30513698 1 + 171630274 A
i calJac3.chr4             C 0 C 0
e micMur3.chr6               425386 234 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     381513 6 -   1411461 I
e canFam3.chr35            26386202 215 +  26524999 I
e saiBol1.JH378341           315704 2310 +    515838 I
e otoGar3.GL873550           372158 0 +  18854210 C
e aotNan1.NW_018496901v1     131989 1 -    486031 I
e cebCap1.NW_016107755v1     948134 0 -   1771730 C

a score=7652.000000
s hg38.chr6_GL000254v2_alt  1528038 1 +   4827813 -a
s panTro5.chr6             30398213 1 + 175400573 -a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30632509 1 + 173848474 -a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     340264 1 +   2037526 -a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75003556 1 + 122973662 -a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30893894 1 + 172585720 -a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30183372 1 - 170955103 -a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     432227 1 +   1495729 -a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     535870 1 -    863181 -a
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29682656 1 -  71996105 -a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     418100 1 -    735854 -a
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     324730 1 -   1829203 -a
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30513699 2 + 171630274 AA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     948134 2 -   1771730 AA
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               425386 234 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     381513 6 -   1411461 I
e canFam3.chr35            26386202 215 +  26524999 I
e saiBol1.JH378341           315704 2310 +    515838 I
e otoGar3.GL873550           372158 0 +  18854210 C
e aotNan1.NW_018496901v1     131989 1 -    486031 I

a score=91.000000
s hg38.chr6_GL000254v2_alt  1528039 1 +   4827813 a
s proCoq1.NW_012149775v1     381519 1 -   1411461 A
i proCoq1.NW_012149775v1   I 6 C 0
e micMur3.chr6               425386 234 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e canFam3.chr35            26386202 215 +  26524999 I
e saiBol1.JH378341           315704 2310 +    515838 I
e otoGar3.GL873550           372158 0 +  18854210 C
e aotNan1.NW_018496901v1     131989 1 -    486031 I
e cebCap1.NW_016107755v1     948136 0 -   1771730 C
e calJac3.chr4             30513701 0 + 171630274 C
e colAng1.NW_012115577v1     324731 0 -   1829203 C
e manLeu1.NW_012107142v1     418101 0 -    735854 C
e chlSab2.chr17            29682657 0 -  71996105 C
e cerAty1.NW_012002535v1     535871 0 -    863181 C
e macNem1.NW_012012100v1     432228 0 +   1495729 C
e macFas5.chr4             30183373 0 - 170955103 C
e rheMac8.chr4             30893895 0 + 172585720 C
e nomLeu3.chr1a            75003557 0 + 122973662 C
e gorGor5.CYUI01015528v1     340265 0 +   2037526 C
e panPan2.chr6             30632510 0 + 173848474 C
e panTro5.chr6             30398214 0 + 175400573 C

a score=64720.000000
s hg38.chr6_GL000254v2_alt  1528040 10 +   4827813 aaaaTCAGAA
s panTro5.chr6             30398214  6 + 175400573 ----TCAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30632510  6 + 173848474 ----TCAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     340265  6 +   2037526 ----tcagaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75003557  6 + 122973662 ----TCAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30893895  6 + 172585720 ----TCAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30183373  6 - 170955103 ----TCAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     432228  6 +   1495729 ----TCAGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     535871  6 -    863181 ----TCAGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29682657  6 -  71996105 ----tcagaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     418101  6 -    735854 ----TCAGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     324731  6 -   1829203 ----tcagaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30513701 10 + 171630274 AAAATCAGAA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     948136 10 -   1771730 AAAATCAGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     131990 10 -    486031 AAAATCAGAA
i aotNan1.NW_018496901v1   I 1 C 0
s proCoq1.NW_012149775v1     381520 10 -   1411461 AAAATCAGAA
i proCoq1.NW_012149775v1   C 0 C 0
e micMur3.chr6               425386 234 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e canFam3.chr35            26386202 215 +  26524999 I
e saiBol1.JH378341           315704 2310 +    515838 I
e otoGar3.GL873550           372158  0 +  18854210 C

a score=2419101.000000
s hg38.chr6_GL000254v2_alt  1528050 249 +   4827813 AGGACA------AGAAAAACAGTTGACTGTGTTAGGATGCAAGGCTGAATCTCTGCACATTCTATTTCCTCT-GAGGCAGTGCTTATTTTCCAAGGAAGAATTTTTGGGTGTGCTATACTGGAGGTCTCCCTTCTCAGGGAGAGTCATCACTTGCTCCAAAACGCTGGACCTCAGCTCAAGGGCACCACTGCAGGAGGAATAAAAAGGTGGAGCCACGCAACAACTCGTC-TGTGTTCCGCAGTAGGCTCTTTTTGA
s panTro5.chr6             30398220 249 + 175400573 AGGACA------AGAAAAACAGTTGACTGTGTTAGGATGCAAGGCTGAATCTCTGCACATTCTATTTCCTCT-GAGGCAGTGCTTATTTTCCAAGGAAGAATTTTTGGGTGTGCTATACTGGAGGTCTCCCTTCTCAGGGAGAGTCACCACTTGCTCCAAAACGCTGGACCTCAGCTCAAGGACACCACTGCAGGAGGAATAACAAGGTGGAGCCACGTGACAACTTGTC-TGTGTTCCGCAGTAGGCTCTTTTTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30632516 249 + 173848474 AGGACA------AGAAAAACAGTTGACTGTGTTAGGATGCAAGGCTGAATCTCTGCACATTCTATTTCCTCT-GAGGCAGTGCTTATTTTCCAAGGAAGAATTTTTGGGTGTGCTATACTGGAGGTCTCCCTTCTCAGGGAGAGTCACCACTTGCTCCAAAACGCTGGACCTCAGCTCAAGGACACCACTGCAGGAGGAATAACAAGGTGGAGCCACGTGACAACTTGTC-TGTGTTCCGCAGTAGGCTCTTTTTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     340271 250 +   2037526 aggaca------agaaaaaCAGTTGACTGTGTTAGGATGCAAGGCTGAATCTCTGCACATTCTATTTCCTCT-GAGGCAGTGCTTATTTTCCAAGGAAGAATTTTTGGGTGTGCTATACTGGAGGTCTCCCTTCTCAGGGAGAGTCATCACTTGCTCCAAAACGCTGGACCTCAGCTCAAGGGCACCACTGCAGGAGGAATAACAAGGTGGAGCCACGCGACAACTCGTCTTGTGTTCCGCAGTAGGCTCTTTTTGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75003563 249 + 122973662 AGGACA------AGAAAAACAGTTGACTGTGTTAGGATGCAAGGCTAAATCTCTGCACATTCTATTTCCTCT-GGGGCAGTGCTTATTTTCCAAGAAAGAATTTTTGGGTGTGCTATACTGGATGTCTCCCTTCTCAGGGAGAGTTGTCACTTGCTCCAAAACGCTGGACCTCAGCTCAAGGGCACCACTGCAGGAGGAATAACAAGGTGGAGCCATGCGACAACTGGTC-TGTGTTCCGCAGTAGGCTCTTTTTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30893901 240 + 172585720 AGGACA------AGAAAAACAGTTGACTGTGTTAGGAGGCAAGG--------CTGCACATTCTATTTCCTCT-GGGGCAGTGCTTATTTTCCAAGGAAGAA-TTTTGGGGGTGCTATACTGGATGTCTCCCTTCTCAGGGAGAGTCATCACTTGCTCCAAAATGCTGGACCTCAGCTCAAGGGCACCACTGCAGGAGGAATAACAAGGTGGAGACACACAACAAATGGTC-TGTGTCCCGCAGTAGGCTCTTTTTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30183379 240 - 170955103 AGGACA------AGAAAAACAGTTGACTGTGTTAGGAGGCAAGG--------CTGCACATTCTATTTCCTCT-GGGGCAGTGCTTATTTTCCAAGGAAGAA-TTTTGGGGGTGCTATACTGGATGTCTCCCTTCTCAGGGAGAGTCATCACTTGCTCCAAAATGCTGGACCTCAGCTCAAGGGCACCACCGCAGGAGGAATAACAAGGTGGAGACACACAACAAATGGTC-TGTGTCCCGCAGTAGGCTCTTTTTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     432234 240 +   1495729 AGGACA------AGAAAAATAGTTGACTGTGTTAGGAGGCAAGG--------CTGCACATTCTGTTTCCTCT-GGGGCAGTGCTTATTTTCCAAGGAAGAA-TTTTGGGGGTGCTATACTGGATGTCTCCCTTCTCAGGGAGAGTCATCACTTGCTCCAAAATGCTGGACCTCAGCTCAAGGGCACCACCGCAGGAGGAATAACAAGGTGGAGACACACAACAAATGGTC-TGTGTCCCGCAGTAGGCTCTTTTTGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     535877 240 -    863181 AGGACA------AGAAAAACAGTTGACTGTGTTAGGAGGCAAGG--------CTGCACATTCTATTTCCTCT-GGGGCAGTGCTTATTTTCCAAGGAAGAA-TTTTGGGGGTGCTATATTGGATGTCTCCCTTCTCAGGGAGAGTCATCACTTGCTCCAAAATGCTGGACCTCAGCTCAAGGGCACCACCGCAGGAGGAATAACAAGGTGGAGACACACAACAAATGGTC-TGTGTCCCGCAGTAGGCTCTTTTTGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29682663 240 -  71996105 aggaca------agaaaaaCAGTTGACTGTGTTAGGAGGCAAGG--------CTGCACATTCTATTTCCTCT-GGGGCAGTGCTCATTTTCCAAGGAAGAA-TTTTGGGGGTGCTATACTGGATGTCTCCCTTCTCAGGGAGAGTCATCACTTGCTCCAAAATGCTGGACCTCAGCTCAAGGGCACCACTGCGGGAGGAATAACAAGGTGGACACACACAACAAATGGTC-TGTGTCCCGCAGTAGGCTCTTTTTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     418107 240 -    735854 AGGACA------AGAAAAACAGTTGACTGTGTTAGGAGGCAAGG--------CTGCACATTCTATTTCCTCT-GGGGCAGTGCTTATTTTCCAAGGAAGAA-TTTTGGGGGTGCTATACTGGATGTCTCCCTTCTCAGGGAGAGTCATCACTTGCTCCAAAATGCTGGACCTCAGCTCAAGGGCACCACCGCAGGAGGAATAACAAGGTGGAGACACACAACAAATGGTC-TGTGTCCCGCAGTAGGCTCTTTTTGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     324737 241 -   1829203 aggaca------agaaaaaCAGTTGACCGTGTTAGGAGGCAAGG--------CTGCACATTCTATTTCCTCTGGGGGCAGTGCTTATTTTCCAAGGAAGAA-TTTTGGGTGTGCTATACTGGATGTCTCCCTTCTCAGGGAGAGTCATCACTTGCTCCAAAACGCTGGACCTCAGCTCAAGGGCACCACTGCAGGAGGAATAACAAGGCGGAGCCACGCAACAAATGGTC-TGTGTCCCGCAGTAGGCTCTTTTTGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30513711 243 + 171630274 AGGACA------AGAAAAACAGTTCAATGTGTTAGGAGGCAAGGTTGAATCTCTGCACATTCTGTTTCCTTT-GGGACAGTGCTTATTTTCCAAGGAAGAA-TTTTGGGTGTGCTGTACTGGATGTCTCCCTTCTCAGGGAGAGTCACCACTTGCTCCAAAACGCTGGACCTCAGCTCAAGGGCCCAACTAAAGGAGGAATAACAAGGTGGAGCCATGTGACAACT-----GGTGTCCTGCA-TAGGTTCATTTTGA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     948146 243 -   1771730 AGCACA------AGAAAAACAGTTCAATGTGTTAGGAGGCAAGGCTGAATCTCTGCACATTCTGTTTCCTTT-GGGGCAGTGCTTATTTTCCGAGGAAGAA-TTTTGGGTGTGCTGTACTGGATGTCTCCCTTCTCAGGGAGAGTCACCACTTGCTCCAAAACGCTGGACCTCAGCTCAAGGGCACCACTGAAGGAGCAATAACAAGGTGGAGCCATGTGACAACT-----GGTGTCCTGCA-TAGGCTCATTTTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     132000 239 -    486031 AGAACA------AGAAAAACACTTCAGTGTGTTAGGAGGCAAAGCTGAATCTCTGCACAT--TGTTTCCTTT-GGGGCGGTGCTTATTTTCCAAGGAAGAA-TTTTGGGTGTGCTGTACTGGATGTCTCCCTTCTCAGG--GAGTCACCACTTGCTCCAAAACACTGGACCTCAGCTCAAGGGCACCACTGAAGAAGGAATAACAAGGTGGAGCCATGTGACATCT-----GGTGTCCTGCA-TAGGCTCATTTTGA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     381530 246 -   1411461 AGGACA------GACAAAACAGTTGAAGGTGTTAGGAGACAAGACTGAATCTCTGTAG-TTCTGTTTCCTTG-GGGACACTGCTTGTTTTCCAAGGAAGGA-TTCTGGGTGTGCCACGCTGGATGTCACCCCTCCCAAGGAGGCTCATCACGTGCTCCAACACGCTGGCCCT-AGCCAAGGGGCTCCACTGCAGGAGGGAGAAAGCGGTGGGGCCATGCAATGGCTGGTC-TGCGTCCCATGGGAGGCTCTTTTCTG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           372158 249 +  18854210 AGGACAAGAAATGGTTAAACAGTTGAC-ATGTTAGTAGGCAAGACTGAATCTTTGTAGATTTTATTTCCTTT-GGGACACTGCTCATTTTGTGAGGTAGGA-TTTTAGGTGTGCCATGCTGGACATCACCCCTGTCAAGGAGGCTCATCATATGCTCTAAGATGCAGGACCTCAGCTCAGGGGCACCACTGCAGGAGAAAGAA---GGTAAAGCCACACAATGGCTGGTC-TGTGTCCCATGGGAGGCTCTTTTTG-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               425386 234 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e canFam3.chr35            26386202 215 +  26524999 I
e saiBol1.JH378341           315704 2310 +    515838 I

a score=325778.000000
s hg38.chr6_GL000254v2_alt  1528299 25 +   4827813 GGGACTTCCAGAAATGACAGCATGT
s panTro5.chr6             30398469 25 + 175400573 GGGACTTCCAGAAATGACAGCATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30632765 25 + 173848474 GGGACTTCCAGAAATGACAGCATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     340521 25 +   2037526 GGGACTTCCAGAAATGACAGCATGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75003812 25 + 122973662 GGGACTTCCAGAAATGACAGCATGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30894141 25 + 172585720 GGGACTTCCAGAAATGACAGCACGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30183619 25 - 170955103 GGGACTTCCAGAAATGACAGCACGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     432474 25 +   1495729 GGGACTTCCAGAAATGACAGCACGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     536117 25 -    863181 GGGACTTCCAGAAATGACAGCACGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29682903 25 -  71996105 GGGACTTCCAGAAATGACAGCACGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     418347 25 -    735854 GGGACTTCCAGAAATGACAGCACGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     324978 14 -   1829203 GGGACTTTT-----------CACGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30513954 25 + 171630274 GGGACTTCCAGAAATGACAGCATGT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     948389 25 -   1771730 GGGACTTCCAGAAATGACAGCATGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     132239 25 -    486031 GGGACTTCCAGAAATGACAGCATAT
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               425620 25 + 123392446 GGGACTTCCAGAAATGACAACATGT
i micMur3.chr6             I 234 I 949
s proCoq1.NW_012149775v1     381776 25 -   1411461 AGGACTTCCAGAAATGACAGCATGT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           372407 25 +  18854210 GGGACTTCCAGAAATGACAGCATGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26386417 25 +  26524999 GGGAGCTACACACAGGACAGCCTGT
i canFam3.chr35            I 215 C 0
e mm10.chr17               58126605 1382 -  94987271 I
e saiBol1.JH378341           315704 2310 +    515838 I

a score=1155942.000000
s hg38.chr6_GL000254v2_alt  1528324 116 +   4827813 GTG----CAGAGAACAGAAAGCAAAGTTACACTGTTACAGAAGGCAGAGAAGGAAAACCTTCGGCTACTGCTATCAGTGGAA-TTTCTCTGTAGCCAGAC---TGAGGTCTGGTGGCATTTGAG
s panTro5.chr6             30398494 116 + 175400573 GTG----CAGAGAACAGAAAGCAAAGTTACACTGTTACAGAAGGCACAGAAGGAAAACCTTCGGCTACTGCTATCAATGGAA-TTTCTCTGTAGCCAGAC---TGAGGTCTGGTGGCATTTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30632790 116 + 173848474 GTG----CAGAGAACAGAAAGCAAAGTTACACTGTTACAGAAGGCACAGAAGGAAAACCTTCGGCTACTGCTATCAATGGAA-TTTCTCTGTAGCCAGAC---TGATGTCTGGTGGCATTTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     340546 116 +   2037526 GTG----CAGAGAACAGAAAGCAAAGTTACACTGTTACAGAAGGCACAGAAGGAAAACCTTCAGCTACTGCTATCAGTGGAA-TTTCTCTGTAGCCAGAC---TGATGTCTGGTGGCATTTGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75003837 116 + 122973662 GTG----CAGAGAACAGAAAGCAAAGTTACACTATTACAAAAGGCACAGAAGGAAAACCTTCGGCTACTGCTATCAATGGAA-TTTCTCTGTAGCCAGAC---TGAGGTCTGGTGGCATTTGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30894166 120 + 172585720 GTGCAAACAGAGAACAGAAAGCAAAGTTACATAGTTACAGAAGGCACAGAAGGAAAACCTTCGGCTACTGCTATCAATGGAA-TTTCTCTGTAGCCAGAC---TGAGGTCTGGTGGCATTTGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30183644 120 - 170955103 GTGCAAACAGAGAACAGAAAGCAAAGTTACACAGTTACAGGAGGTACAAGAGGAAAACCTTCGGCTACTGCTATCAATGGAA-TTTCTCTGTAGCCAGAC---TGAGGTCTGGTGGCATTTGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     432499 120 +   1495729 GTGCAAACAGAGAACAGAAAGCAAAGTTACACAGTTACAGGAGGTACAAGAGGAAAACCTTCGGCTACTGCTATCAATGGAA-TTTCTCTGTAGCCAGAC---TGAGGTCTGGTGGCATTTGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     536142 120 -    863181 GTGCAAACAGAGAACAGAAAGCAAAGTTACACAGTTACAGGAGGTACAAGAGGAAAACCTTCGGCTACTGCTATCAATGGAA-TTTCTCTGTAGCCAGAC---TGAGGTCTGATGGCATTTGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29682928 114 -  71996105 GTG----CAGAGAACAGAAAGCAAAGCT--ACAGTTACAGAAGGCACAGAGGGAAAACCTTCGGCTACTGCTATCAATGGAA-TTTCTCTGTAGCCAGAC---TGAGGTCTGGTGGCATTTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     418372 120 -    735854 GTGCAAACAGAGAACAGAAAGCAAAGTTACACAGTTACAGGAGGTACAAGAGGAAAACCTTCGGCTACTGCTATCAATGGAA-TTTCTCTGTAGCCAGAC---TCAGGTCTGGTGGCATTTGAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     324992 116 -   1829203 GTG----CAGAGAACAAAAAGCAAAGTTACACAGTTACAGGAGGCACAGAAGGAAAACCTTCGGCTACTGCTATCAGTGGAA-TTTCTCTGTAGCCAGAC---TGAGGTCTGGTGGCATTTGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30513979 111 + 171630274 GTG----CAGAGAACAGAAAGC--AGTTACACAGTTCTAGA---CATGGAAGGAAAACCTTGGGCTACTGCTCTCAATGGAA-TTTCTCTGTAGCCAGAC---TGAGGTCTGGTGACATTTGAG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     948414 116 -   1771730 GTGCAAACAGAGAACAGAAAGC--AGTTACACAGTTCTAAA---CATGGAAGGAAAACCTTGGGCTACTGCTATCAATGGAATTTTTTTTGTAGCCAGAC---TGAGATCTGGTGACATTTGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     132264 115 -    486031 GTGCAAACAGAGAACAGAAAGC--AGTTACACAGTTCTAGA---CATGGAAGGAAAACCTTGGGCTACTGCTATCAATGGAA-TTTCTTTGTAGCCAGAC---TGAGGTCTGGTGACATTTGAG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     381801 117 -   1411461 ATGTAAACAGAGGACAGAAAGCAAAGTCCCAGAGTTCTAGT---CATAGAAGAAAAACCCTGGGCTGCTGCTATCAATGGAA-TCTCTTTGTACGCAGAT---TGAGGTCTGGGGACATCCGAG
i proCoq1.NW_012149775v1   C 0 I 12
s otoGar3.GL873550           372432 117 +  18854210 GTGTAAACAGAAGACAGAAAGCCGAGTTCTAGACATATA-----TGCAGAAGAAAAATCCTAGGCTACTGCTATCAATGGAA-CCTCTTTGTATCCAGTTGA-GAAGGTCTAGTTACATCTGAG
i otoGar3.GL873550         C 0 I 2
s canFam3.chr35            26386442 115 +  26524999 GTGCATGGGGAGGATGGTGGGC------CCGGAGCCTTAGGAGG-AGTGCAGGGGAGCCCCAGGCT-CTGCTGCCCACAGGA-CCTCGCTGTAGCCAGACGAGCAGGGTCCGGTGACACATGAG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               425645 949 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e saiBol1.JH378341           315704 2310 +    515838 I

a score=79960.000000
s hg38.chr6_GL000254v2_alt  1528440 25 +   4827813 ATATAATATAGATATAGACCTACAA
s panTro5.chr6             30398610 25 + 175400573 ATATAATATAGATATAGACCTACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30632906 25 + 173848474 ATATAATATAGATATAGACCTACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     340662 21 +   2037526 ATATAAT----ATATAGACCTACAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75003953 21 + 122973662 ATATAAT----ATATAGACCTACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30894286 20 + 172585720 ATACAATATAGAT-----CCTACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30183764 20 - 170955103 ATACAATATAGAT-----CCTACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     432619 20 +   1495729 ATACAATATAGAT-----CCTACAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     536262 20 -    863181 ATACAATATAGAT-----CCTACAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29683042 20 -  71996105 ATACAATATAGAT-----CCTACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     418492 20 -    735854 ATACAATATAGAT-----CCTACAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     325108 20 -   1829203 ATACAATATAGAT-----CCTACAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30514090 17 + 171630274 ACAT--TATAGAT------CTACAG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     948530 17 -   1771730 ATAT--TATAGAT------CTACAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     132379 17 -    486031 ATAT--TATAGAT------CTACAG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           372551 21 +  18854210 ATAT-ATATACACACACATCTA---
i otoGar3.GL873550         I 2 C 0
s canFam3.chr35            26386557 20 +  26524999 TTACAATAAAACCTGAGGCC-----
i canFam3.chr35            C 0 C 0
e micMur3.chr6               425645 949 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e proCoq1.NW_012149775v1     381918 12 -   1411461 I
e saiBol1.JH378341           315704 2310 +    515838 I

a score=1625481.000000
s hg38.chr6_GL000254v2_alt  1528465 149 +   4827813 ATACAGATCTCCAGGCTGttcattcaacaagtctttattgagcacctactctgtgcccagcactgcactaggtgccatg-agaatacaagagtagtataagatgttatccgcc------------------------------------------------------------------------------------------ctccaggagcttacaaaactagaggcagaaataagat---
s panTro5.chr6             30398635 149 + 175400573 ATACAGAACTCCAGGCTGttcattcaacaagtctttattgagcacctactctgtgcccagcactgcactaggtgccatg-agaatacaagagtagtataagatgttatccgcc------------------------------------------------------------------------------------------ctccaggagcttacaaaactagaggcagaaataagat---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30632931 146 + 173848474 ATACAGAACTCCAGGCTGttcatt---caagtctttattgagcacctactctgtgcccagcactgcactaggtgccatg-agaatacaagagtagtataagatgttatccgcc------------------------------------------------------------------------------------------ctccaggagcttacaaaactagaggcagaaataagat---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     340683 149 +   2037526 ATACAGATCTCCAGGCTGttcaatcaacaagtctttattgagcacctactctgtgcccagcactgcactaggtgccata-agaatacaagagtagtataagatgttatccgcc------------------------------------------------------------------------------------------ctccaggagcttacaaaactagaggcagaaataagat---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75003974 149 + 122973662 ATACAGATCTCCAGGCcgttcattcaacaagtctttattgagcacctactctgtgcccagcactgcactaggtgccatg-agaatacaagagtagtataagatgttatccgcc------------------------------------------------------------------------------------------ctccaggagcttacaaaactagaggcagaaataagat---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30894306 149 + 172585720 ATATACATTTCCAGACCGTTCATtcaacaagtctttattgagcacctactctgtgcccagcactgcactaggtgccatc-agaatacaagagtagtataagatgttatccgcc------------------------------------------------------------------------------------------ctccaggagcttacaaaactagaggcagaaataagat---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30183784 149 - 170955103 ATATACATTTCCAGACcgttcattcaacaagtctttattgagcacctactctgtgcccagcactgcactaggtgccatc-agaatacaagagtagtataagatgttatccgcc------------------------------------------------------------------------------------------ctccaggagcttacaaaactagaggcagaaataagat---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     432639 149 +   1495729 ATATACATTTCCAGACTGTTCATtcaacaagtctttattgagcacctactctgtgcccagcactgcactaggtgccatc-agaatacaagagtagtataagatgttatccgcc------------------------------------------------------------------------------------------ctccaggagcttacaaaactagaggcagaaataagat---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     536282 149 -    863181 ATACACATTTCCAGACCATTCATtcaacaagtctttattgagcacctactctgtgcccagcactgcactaggtgccatc-agaatacaagagtagtataagatgttatccgcc------------------------------------------------------------------------------------------ctccaggagcttacaaaactagaggcagaaataagat---
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29683062 144 -  71996105 ATATACATTTCCAGACcgttcattcaacaagtctttattgagcacctactctgtgcccagcactgcactaggtgccatc-agaatacaagagtagt-----atgttatccgcc------------------------------------------------------------------------------------------ctccaggagcttacaaaactagaggcagaaataagat---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     418512 149 -    735854 ATATACATTTCCAGACCGTTCATtcaacaagtctttattgagcacctactctgtgcccagcactgcactaggtgccatc-agaatacaagagtagtataagatgttatccgcc------------------------------------------------------------------------------------------ctccaggagcttacaaaactagaggcagaaataagat---
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     325128 149 -   1829203 ATATACATCTCCAGGCCATTCATtcaacaagtctttattgagcacctactctgtgcccagcactgcactaggtgccatc-agaatacaagagtagtataagatgttatccgcc------------------------------------------------------------------------------------------ctccaggagcttacaaaactagaggcagaaataagat---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30514107 146 + 171630274 ATATAGATCCCCAGACcattcattcaacaagtctttattgagcacctgctctgtgcccagcactgcactaggtgccatg-agaatacaagagaagtataagatgttatatgcc------------------------------------------------------------------------------------------ctcc---agcttacaaaactagaggcagaaataagat---
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     948547 146 -   1771730 ATATAGATCCCCAGACCGTTCATtcaacaagtctttattgagcacctactctgtgcccagcactgcactaggtgccatg-agaatacaagagaagtataagatgttatgcgcc------------------------------------------------------------------------------------------ctcc---agcttacaaaactagaggcagaaataagat---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     132396 146 -    486031 ATATAGATCCCCAGACcgttcattcaacaagtctttattgagcacctactctgtgcccagcactgcactaggtgccatg-agaatacaagagaagtgtaagatgttatgcgcc------------------------------------------------------------------------------------------ctcc---agcttacaaaactagaggcagaaataagat---
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     381930 145 -   1411461 ATACATATCACCAGGCTGTTTATtcaacaagtctctactgagcacctaccccatgcccagcgctgcaccaggc-ccctggagaatgcaaggtaaggtt----tggcgtccgcc------------------------------------------------------------------------------------------cgctaggagcttacaaaactaggggcagagataagat---
i proCoq1.NW_012149775v1   I 12 C 0
s otoGar3.GL873550           372572 224 +  18854210 -------TCTCCAGGCTattcattcaacaagtctttattgagcacctactctgtgctcagcactgcactaggtgtcatgaagaatacaagata---------tggtgtcctccctctaggacagtggttctcaaccttcctaatgtcatgaccctttaatacagttcctgtgggtcgtgactgagtggtcatgagaaccactgctctaggagcttacagaactacaggcagagataagat---
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26386577 137 +  26524999 -------------AGCTGCtcagtcaacaagtctttattgagcacctatgctgtgcccagcactgc-cttagtgccgtggagggtacagggcagga--gacacagtgtctgcc------------------------------------------------------------------------------------------ctcagggaccttacaaaactagaggcagaagTGGAGGGGT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               425645 949 + 123392446 I
e mm10.chr17               58126605 1382 -  94987271 I
e saiBol1.JH378341           315704 2310 +    515838 I

a score=634325.000000
s hg38.chr6_GL000254v2_alt  1528614 47 +   4827813 gtacgtgtgactcaggcagcatgtgacacacacaaagtgggcagctc
s panTro5.chr6             30398784 47 + 175400573 gtacatgtgactcaggcagcatgtgacacacacaaagtgggcagctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30633077 47 + 173848474 gtacatgtgactcaggcagcatgtgacacacacaaagtgggcagctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     340832 47 +   2037526 gtacatgtgactcaggcagcatgtgacacacacaaagtgggcagctc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75004123 47 + 122973662 gtaCATGTGACTCAGGCTGCATGTAACACACACAAAGTGGGCAGCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30894455 47 + 172585720 gtacatgtgaCTCAGGCAGCATGTGGCACACACAAAGTGGGCAGCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30183933 47 - 170955103 gtaCATGTGACTCAGGCAGCATGTGGCACACACAAAGTGGGCAGCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     432788 47 +   1495729 gtacatgtgaCTCAGGCAGCATGTGGCACACACAAAGTGGGCAGCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     536431 47 -    863181 gtacatgtgaCTCAGGCAGCATGTGGCACACACAAAGTGGGCAGCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29683206 47 -  71996105 gtacatgtgactcaggcaGCATGTGGCACACACAAAGTGGGCAGCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     418661 47 -    735854 gtacatgtgaCTCAGGCAGCATGTGGCACACACAAAGTGGGCAGCTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     325277 47 -   1829203 gtacatgtgaCTCAGGCAGCATGTGGCACACACAAAGTGGGCAGCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30514253 47 + 171630274 gtacatgtgactcaggcagcatgtgacacacacaaagtgggcagctc
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     948693 47 -   1771730 gtgcatgtgaCTCAGGCAGCATGTGATACACACAAAGTGGGCAGCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     132542 47 -    486031 gtacatgtgactcaggcagcatgtgacacacacaaagtgggcagctc
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     382075 47 -   1411461 gtacatgtgaCTGAAGCAGCATGTGACACATACAAAGTGGGCAACTC
i proCoq1.NW_012149775v1   C 0 I 360
s otoGar3.GL873550           372796 47 +  18854210 gtacatgtgactcaggcaGCATGTAACACGTACCAAGTGGGCAACTC
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58127987 47 -  94987271 GTACTAGTGACTCAGGCAGCATGTGATGCATACGAAGTGTTCAGTCT
i mm10.chr17               I 1382 C 0
s canFam3.chr35            26386714 39 +  26524999 CTATCTATGGCTTGGGCGGCATGGAGCATCTACAAAGTG--------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               425645 949 + 123392446 I
e saiBol1.JH378341           315704 2310 +    515838 I

a score=553265.000000
s hg38.chr6_GL000254v2_alt  1528661 73 +   4827813 tgagaca--a--tggtggtcaagtgaccactgaggcccagagccgttggaacagtctctt--aga---acagggtggaggac
s panTro5.chr6             30398831 73 + 175400573 tgagaca--a--tggtggtcaagagaccactgaggcccagagccgttggaacagtctctt--aga---acagggtggagcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30633124 73 + 173848474 tgagaca--a--tggtggtcaagagaccactgaggcccagagccgttggaacagtctctt--aga---acagggtggaggac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     340879 73 +   2037526 tgagaca--a--tggtggtcaagagaccactgaggcccagagccgttggaacagtctctt--aga---acagggtggaggac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75004170 71 + 122973662 TGAGACA--A--TGGTGGTC--GAGACCACTGAGACCCAGAGCCTTTGGAACAGACTCTT--ACA---ACAGGGTGGAGGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30894502 64 + 172585720 TGAGACA--A--CGGTGGTCAAGAGACCACTGAGACCC---------GGAACAGTCTCTT--AAA---ACAGGGTGGAGGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30183980 64 - 170955103 TGAGACA--A--TGGTGGTCAAGAGACCACTGAGACCC---------GGAACAGTCTCTT--AAA---ACAGGATGGAGGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     432835 64 +   1495729 TGAGACA--A--TGGTGGTCAAGAGACCACTGAGACCC---------GGAACAGTCTCTT--AAA---ACAGGGTGGAGGAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     536478 64 -    863181 TGAGACA--A--TGGTGGTCAAGAGACCACTGAGACCC---------GGAACAGTCTCTT--ACA---ACAGGGTGGAGGAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29683253 64 -  71996105 TGAGACA--A--TGGTGGTCAAGAGACCACTGAGACCC---------GGAACAGTCTCTT--ACA---ACAGGGTGGAGGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     418708 64 -    735854 TGAGACA--A--TGGTGGTCAAGAGACCACTGAGACCC---------GGAACAGTCTCTT--ACA---ACAGGGTGGAGGAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     325324 64 -   1829203 TGAGACA--A--TGGTGGTCAAGAGACCACTGAGACCC---------GGAACAGTCTCTT--AGA---ACAGGGTGGAGGTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30514300 71 + 171630274 tgagaca--a--tggtggtgaagagaccactgagacccagatccgttggatcag--tctt--aga---acagggtggaggag
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     948740 71 -   1771730 TGAGACA--A--TGGTGGTGAAGAGACCACTGAGACCCAGATCCGTTGGAGCAG--TTTT--AGA---ACAGGGTGGAGGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     132589 71 -    486031 tgagaca--a--tggtggcaaagagaccactgagacccagatccgttggagcag--tctt--aga---acagagtggaggag
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           372844 75 +  18854210 TGAGACA--ATGTGGTGACTAAGAGACCAGTGAGACCCAGAGCCACTAGAGCAGTCACTT--AAA---GGACAGGGGAAGAG
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58128034 73 -  94987271 CGAGACGCTG--TGGTGACTCCGAGGCCACCAAGATCCAGTGTCTG-GGAACAGTCTGTTCAAGA---GCCAAGAGGAG---
i mm10.chr17               C 0 C 0
s canFam3.chr35            26386753 28 +  26524999 ---------------------------------------------------CAATGTCC---AGACACACAGGGCAGGGGAC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               425645 949 + 123392446 I
e proCoq1.NW_012149775v1     382122 360 -   1411461 I
e saiBol1.JH378341           315704 2310 +    515838 I

a score=3913187.000000
s hg38.chr6_GL000254v2_alt  1528734 369 +   4827813 ttaaaacttggatgaacagggg---ct-ggcagagcacttggaatgggtaaggacAAGACTGGGAG-ATCAATTTGGCTGGAGCAG-GGGAGCTTGTGTTAAACTGTGATGATGAGGGGCACCTGGACAGAGGTTGGGTCCGTGGGCAATGAGAAGACATGTTACTCCCTCTCTTGACATGAAGACCTGGTGGGCTTGTGGCCTCCTGCTGCCTTCCTTT---------------CCCTGTCTTCCCATCTCCACTC--TCTCCTAGGAAAGTGGAACCTGGATGCTG-GTAGGGCCAGAGACAGAGGCTTAACACCCTGCTGGGGAACCTGGTCAGAACTCCCGAGGCAGGAGAGGTTCTGCTCCACTGGATGTTTGTCTTGGTGTTTTTGG
s panTro5.chr6             30398904 369 + 175400573 ttaaaacttggatgaacagggg---ct-ggcagagcacttggaatgggtaaggacAAGACTGGGAG-ATCAATTTGGCTGGAGCAG-GGGAGCTTGTGTTAAACTGTGATGATGAGGGGCACCTGGACAGAGGTTGGGTCGGTGGGCAATGAGAAGACATGTTACTCCCTCTCTTGACATGAAGACCTGGTGGGCTTGTGGCCTCCTGCTGCCTTCCTTT---------------CCCTGTCTTCCCATCTCCACTC--TCTCCTAGGAAAGTGGAACCTGGATACTG-GTAGGACTAGAGACAGAGGCTTAACACCCTGCTGGGGAACCCGGTCAGCACTCCCGAGGCAGGAGAGGTTCTGCTCCACCGGATGTTTGTCTTGGTGTTTTTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30633197 369 + 173848474 ttaaaacttggatgaacagggg---ct-ggcagagcacttggaatgggtaaggacAAGACTGGGAG-ATCAATTTGGCTGGAGCAG-GGGAGCTTGTGTTAAACTGTGATGATGAGGGGCACCTGGACAGAGGTTGGGTCGGTGGGCAATGAGAAGACATGTTACTCCCTCTCTTGACATGAAGACCTGGTGGGCTTGTGGCCTCCTGCTGCCTTCCTTT---------------CCCTGTCTTCCCATCTCCACTC--TCTCCTAGGAAAGTGGAACCTGGATGCTG-GTAGGACTAGAGACAGAGGCTTAACACCCTGCTGGGGAACCCGGTCAGCACTCCCGAGGCAGGAGAGGTTCTGCTCCACCGGATGTTTGTCTTGGTGTTTTTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     340952 369 +   2037526 ttaaaacttggatgaacagggg---ct-ggcagagcacttggaatgggtaaggacAAGACTGGGAG-ATCAATTTGGCTGGAGCAG-GGGAGCTTGTGTTAAACTATGATGATGAGGGGCACCTGGACAGAGGTTGGGTCCGTGGGCAATGAGAAGACATGTTACTCCCTCTCTTGACATGAAGACCTGGTGGGCTTGTGGCCTCCTGCTGCCTTCCTTT---------------CCCTGTCTTCCCATCTCCACTC--TCTCCTACGAAAGTGGAACCTGGATGCTG-GTAGGGCCAGAGACAGAGGCTTAACACCCTGCTGGGGAACCCGGTCAGAACTCCCGAGGCAGGAGAGGTTCTGCTCCACCGGATGTTTGTCTTGGTGTTTTTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75004241 369 + 122973662 TTAAAACTTGGATGAACAGGGG---CT-GGCAGAGCACTTAGAATGGGTAAGGACAAGACTGGGAG-ATCAATTTGGCTGGAGCAA-GGGAGCTTGTGTTAAACTGTGGCCATGAGGGGCGCCTGGACAGAGGCTGGGTCCGTGGGCAATGAGGAGACATGTTACTCCCTCTCTTGACATGAAGACCTGGTGGGCTTGTGGCCTCCTGCTGCCTTCCTTT---------------CCCTGTCTTCCCATCTCCACTC--TCTCCTAGGAAAGTGGAACCTGGATGCTG-GTAGGGCCAGAGACAGAGGCTTACCACCCTGCTGGGGAACCTGGTCAGAACTCCCAAGGCAGGAGAGGTTCTGCTCCACTGGATATTTGTCTTGGTGTTTTTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30894566 370 + 172585720 TTAAAACTTGGATGAACAGGGA---CT-GGCAGAGCACTTGGAATGGGTAAGGTCAAGACTGGGAG-ATCAATTTGGCTGGAGCAA-GGGAGCTTGTGTTAAACTGTGGCCATGAGGGGCGCCTGGACAGAGGCTGGGTCCGTGGGCAATGAGGAGACACGTTACTCCCTCTCTTGACATGAAGACCCGGTGGACTTGTGGCCTCCTGCTGCCTTCCTTT---------------CCCTGTCTTCCCATCTCCACTC--TCTCCTAGGAAAGTGGAACCTGGAGGCTGAGTAGGGCCAGGGACAGTGGATTAACACCCTGCTGGGGACCGTGGTCGGAACTCCCCAGGCAGGGGAGGTTCTGTTCCACTGGATATTTGTCTTGGTGTTTTTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30184044 370 - 170955103 TTAAAACTTGGATGAACAGGGA---CT-GGCAGAGCACTTGGAATGGGTAAGGTCAAGACTGGGAG-ATCAATTTGGCTGGAGCAG-GGGAGCTTGTGTTAAACTGTGGCCATGAGGGGCGCCTGGACAGAGGCTGGGTCCGTGGGCAATGAGGAGACACGTTACTCCCTCTCTTGACATGAAGACCCGGTGGACTTGTGGCCTCCTGCTGCCTTCCTTT---------------CCCTGTCTTCCCATCTCCACTC--TCTCCTAGGAAAGTGGAACCTGGAGGCTGAGTAGGGCCAGGGACAGTGGATTAACACCCTGCTGGGGAACGTGGTCGGAACTCCCCAGGCAGGGGAGGTTCTGTTCCACTGGATATTTGTCTTGGTGTTTTTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     432899 370 +   1495729 TTAAAACTTGGATGAACAGGGA---CT-GGCAGAGCACTTGGAATGGGTAAGGTCAAGACTGGGAG-ATCAATTTGGCTGGAGCAG-GGGAGCTTGTGTTAAACTGTGGCCATGAGGGGCACCTGGACAGAGGCTGGGTCCGTGGGCAATGAGGAGACACGTTACTCCCTCTCTTGACATGAAGACCCGGTGGACTTGTGGCCTCCTGCTGCCTTCCTTT---------------CCCTGTCTTCCCATCTCCACTC--TCTCCTAGGAAAGTGGAACCTGGAGGCTGAGTAGGGCCAGGGACAGTGGATTAACACCCTGCTGGGGAACGTGGTCGGAACTCCCCAGGCAGGGGAGGTTCTGTTCCACTGGATATTTGTCTTGGTGTTTTTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     536542 370 -    863181 TTAAAACTTGGATGAACAGGGA---CT-GGCAGAGCATTTGGAATGGGTAAGGTCAAGACTGGGAG-ATCAATTTGGCTGGAGCAG-GGGAGCTTGTGTTAAACTGTGGCCATGAGGGGCGCCTGGACAGAGGCTGGGTCCGTGGGCAATGAGGAGACACGTTACTCCCTCTCTTGACATGAAGACCCGGTGGACTTGTGGCCTCCTGCTGCCTTCCTTT---------------CCCTGTCTTCCCATCTCCTCTC--TCTCCTAGGAAAGTGGAACCTGGAGGCTGAGCAGGGCCAGGGACAGTGGATTAACACCCTGCTGGGGAACGTGGTCAGAACTACCCAGGCAGGGGAGGTTCTGTTCCACTGGATATTTGTCTTGGTGTTTTTGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29683317 364 -  71996105 TTAAAAC-TGGATGAACAGGGA---CT-GGCAGAGCATTTGGAATGGGTAAGGTCAAGACTGGGAG-ATCAATTTGGCTGGAGCAG-GGGAGCTTGTGTTAAACTGTGGCCATGAGGGGCGCCTGGACGGAGGCTGGATCCGTGGGCAATGAGGAGACACGTTACTCCCTCTCTTGACATGAAGACCTGGTGGACTTGTGGCCTCCTGCTGCCTTCCTTT---------------CCCTGTCTTCCCATCTCCACTC--TCTCCTAGGAAAGTGGAACCTGGAGGCTGAGTAGGGCCAGGGACAGAGGATTAACACCCTGCTGGGGAACGTGGTCAGAATTCCCCAGGCAGGGGAGGTTCTGCTCCACTGGATAT-----TTGGTGTTTTTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     418772 370 -    735854 TTAAAACTTGGATGAACAGGGA---CT-GGCAGAGCATTTGGAATGGGTAAGGTCAAGACTGGGAG-ATCAGTTTGGCTGGAGCAG-GGGAGCTTGTGTTAAACTGTGGCCATGAGGGGCGCCTGGACAGAGGCTGGGTCCGTGGGCAATGAGGAGACACGTTACTCCCTCTCTTGACATGAAGACCTGGTGGACTTGTGGCCTCCTGCTGCCTTCCTTT---------------CCCTGTCTTCCCATCTCCACTC--TCTCCTAGGAAAGTGGAACCTGGAGGCTGAGTAGGGCCAGGGACAGTGGATTAACACCCTGCTGGGGAACGTGGTCAGAACTCCCCAGGCAGGGGAGGTTCTGTTCCACTGGATATTTGCCTTGGTGTTTTTGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     325388 370 -   1829203 TTAAAACTTGGATGAACAGGGA---CT-GGCAGAGCATTTGGAATGGGTAAGGTCAAGACTGGGAG-ATCAATTTGGCTGGAGCAG-GGGAGCTTGTGTTAAACTGTGGCCATGAGGGGCGCCTGGACAGAGGCTGGGTCTGTGGGCAATGAGAAGACACGTTACTCCCTCTCTTGACGTGAAGACCTGGTGGACTTGTGGCCTCCTGCTGCCTTCCTTT---------------CCCTGTCTTTCCATCTCCACTC--TCTCCTAGGAAAGTGGAACCTGGATGCTGAGTAGGGCCAGGGACAGAAGATTAACACCCTGCTGGGGAACGTGGTCAGAACTCCCCAGGCAGGGGAGGTTCTGTTCCACTGGATATTTGTCTTGGTGTTTCTGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30514371 368 + 171630274 ttaaaacttggatgagcagggg---ct-ggGAGAGCACTTGGAATGGGTAAGGACAAGACTGGGAG-ATCAATTTGGCTGGAGCA--GGGAGATTGTGTTAAACTGTGGCCATGAGGGGCGCGTGGACAGATGCTGGGTCCGTGGGCAATGAGGAGACCCGTTACTTCCTCTCTTGAGATAAAGACCAAGTGGCTTTGTGGCCTCCCACTGCCTTCCTTT---------------CCCCATCTTCCCATCTCCACTC--TCTCCTAGGAAAGTGGAACCTGCATGCTAAGTAGGGCCAGAGACAGAGGCTTAACACCT-GCTGGGGAACCTGGTCAGAACTCCCGAGGCAGGGGAGGCTCTGCTCCACTGGATATTTGTCTTGGTGTTTTTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           318014 364 +    515838 TTAAAACTTGGATGAGCAGGGG---CT-GGCAGAGCACTTGGAACGGGTAAGGACAAGACTGGGAG-ATCAATTTGGCTGGAGCA--GGGAGCTTGTGTT-AACGGTGGCCATGAGGGGCGCCTGGACAGAGGCTGGGTCCGTGGGCA---AGGAGACTCGTTACTTCCTCACTTGAGATAAAGACCCAGTGGGTTTGTGGCCTCCCGCTGCCTTCCTTT---------------CCCCATCTTACCATCTCCACTC--TCTCCTAGGAAAGTGGAACCTGCATGCTGAGTAGGGCCAGGGACAGAGGCTTAACACTC-GCTGGGGAACTTCATCACAACTCCCGAGGCAAGAGAGGCTCTGCTCCACTGGATATTTGTCTTGGTGTTTTTGG
i saiBol1.JH378341         I 2310 C 0
s cebCap1.NW_016107755v1     948811 358 -   1771730 TTAAAACTTGGATGAGCAGTGG---CT-GGCAGAGCACTTGGAATGGGTAAGGACAAGACTGGGAG-ATCAATTTGGCTGGAGCA--GGGAGCTTGTGTTAAACTGTGGCCATAAGGGGCGCCTGGACAGAGGCTGGGTCCGTGGGCAATGAGGAGACACGTTACTTCCTCTC--GAGATAAAGACCTA--------GTGGCCTCCCACTGCCTTCCTTT---------------CCCCATCTTCCCATCTCCACTC--TTTCCTAGGAAAGTGGAATCTGCATGCTGAGTAGGGCCAGGGACAGAGGCTTAACACCC-GCTGGGGAACCTGGTCAGAACTCCCGAGGCAGGGGAGGCTCTGCTCCACTGGATATTTGTCTTGGTGTTTTTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     132660 368 -    486031 ttaaaacttggatgagcagggg---ct-ggcagagcacttggaatgggtaaggacAAGACTGGGAG-ATCAATCTGGCTGGAGCA--GGGAACTTGTGTTAAACTGTGGCCATGAGGGGCGCCTGGACAGAGGCTGGGTCTGTGGGCAATGAGGAGACACGTTACTTCCTCTCTTGAGATAAAAACCTAGTGGGTTTGTGGCCTCCCGTTGACTTCCTTT---------------CCCCATCTTCCCATCTCCACTC--TCTCCTAGGAAAGTGGAACTTGCATGCTGAGTAGGGCCAGGGACAGAGGCTTAACACCC-GCTGGGGAACCTGGTCAGAACTCCCGAGGCAGGGGAGGCTCTGCTCCACTGGATATTTGTCTTGGTGTTTTTGG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           372919 321 +  18854210 TTAAAACTTTGATTAGCAGGGG---ATCAGCAGAGTACTTGGAATGGTTAAGGACAAGACTAGGAG-ATCAACTTGG-TGGAGCA--GGGAGCTC------ACCTGT--CCA-----GAGGCCAGGCCATGGATTTGGTTTGTGGGCAACAAGGAGATGCCTCACTCCCTCT---GACA-----------------------CCACCACTGTCTTCCTTTCCTCTCCCCACACTGCCCTGGCTTTCTATCCCTACTC--CCTCTTAGGAAAGCAGAACCAGGATGCTGAGGAAGACAAGAGACAGAAGCTGAATACCCTCCTGG---------------------AGGCA---GAGATTTTGTTCCTGTAGATATTTACCATGGTGTTCCTAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58128107 261 -  94987271 CTAACACTTGCACGGGCAGAAG---AA---------ATCTGGAATGTTTAAGGATAAAAAGGGGGGCATCATTTTGGCT-AAGCA---GGGACTCATGTTCAACTAT---------GGGCACC--------AGCTGGGTCAGCAG-------GGCGATACTGCAGGCCCTTTCTCCATAGTAAGACCTA---GGACAGAGGCTCTCTAGATTCCTCATGG---------------CCCTCTCTCCCCTTCCCCAGTCCATCTCCTAGGAAAGT-GAATCTGGACACTCCATAGTGTCAGCAACGAGGTCTTGACCTCCTG-------------------------------------------------------------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26386781 278 +  26524999 ----------GGGGGACAGGGGTGCCT-GGC-------CTGGAATGG-TGCGGATGAGGGTGGCAG-GT-----------GACCAGTGAGAGCT--------------------GGGAGCCCCTGGGCA----------CAGTGGGCCATG-----------CTCGCGCTGTCCCGGCGGGAAGACCCAGTGAGCTGGGGGCATCCTGCAGGCTTCCATC---------------CC----------------------TCTCCCGGGGATGCCGACCCTGTGCACGAAGTGCAGCCACCG-CACGAGCTTCCCACCC---TAGAGGACCTGACCAGGGCTTCCCAGGCAGG-GAGGTTCCCCT-GACTGCACATTTGCTCCGGTGTGTTCAG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               425645 949 + 123392446 I
e proCoq1.NW_012149775v1     382122 360 -   1411461 I

a score=3563809.000000
s hg38.chr6_GL000254v2_alt  1529103 305 +   4827813 ATGTGCTGATCAAGAGCAAGATGTTCTGGATTCTT----AAAA------CT-CCCCTCACAAGGACCAATC--T--AGAGATAATTTATTGATCAGTGATCACAGCTTGTACCCCAAAGCCGTGTATGTCTGGATCC-TT-CCCTAAGACCACAGATAGCTCCAGGGAGT---CCCACCTCCTTGGCTATGGAAA-----T-ATGCTCAGCCCTGGTTTCAGAGAAGCCT--GGACTCCACTCTGGACCCCATGAGATGATATGCGCTGGTACTCCAGG------CTTTAAATGGCCTGGGAAGCCTCAGTGGATTTT------GTTT-ATTTTCAGCATTGCCAT
s panTro5.chr6             30399273 310 + 175400573 ATGTGCTGATCAAGAGCAAGATGTTCTGGATTCTT----AAAAA-----CT-CCCCTCACAAGGACCAATC--C--AGAGATAATTTATTGATCAGTGATCACAGCTTGTACCCCAAAGCCGTGTATGTCTGGATCC-TT-CCCTAAGACCACAGATAGCTCCAGGGAGT---CCCACCTCCTTGGCTATGGAAA-----T-ATGCTCAGCCCTGGTTTCAGAGAAGCCT--GGACTCCACTCTAGACCCCATGAGATGATATGCACTGGTACTCCAGG------CCTTAAATGGCCTGGGAAGCCTCAGTGGATTTTCATT--GTTT-ATTTTCAGCATTGCCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30633566 311 + 173848474 ATGTGCTGATCAAGAGCAAGATGTTCTGGATTCTT----AAAAA-----CTCCCCCTCACAAGGACCAATC--C--AGAGATAATTTATTGATCAGTGATCACAGCTTGTACCCCAAAGCCGTGTATGTCTGGATCC-TT-CCCTAAGACCACAGATAGCTCCAGGGAGT---CCCACCTCCTTGGCTATGGAAA-----T-ATGCTCAGCCCTGGTTTCAGAGAAGCCT--GGACTCCACTCTAGACCCCATGAGATGATATGCACTGGTACTCCAGG------CCTTAAATGGCCTGGGAAGCCTCAGTGGATTTTCATT--GTTT-ATTTTCAGCATTGCCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     341321 309 +   2037526 ATGTGCTGATCAAGAGCAAGATGTTCTGGATTCTT----AAAA------CT-CCCCTCACAAGGACCAGTC--C--ACAGACAATTTATTGATCAGTGATCACAGCTTGTACCCCAAAGCCGTGTATGTCTGGATCC-TT-CCCTAAGACCACAGATAGCTCCAGGGAGT---CCCACCTCCTTGGCTATGGAAA-----T-ATGCTCAGCCCTGGTTTCAGAGAAGCCT--GGACTCCACTCTGGACCCCATGAGATGATATGCACTGGTACTCCAGG------CCTTAAATGGCCTGGGAAGCCTCAGCAGATTTTCATT--GTTT-ATTTTCAGCATTGCCAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75004610 310 + 122973662 ATGTGCTGATCAAGAGCAAGATGTTCTGGATTCTT----AAAA------CT-CCCCTCACAAGGACCAATC--C--AGAGATAATTTATTGATCAGTGATCACAGCTTGTACCCCAAAGCCGTGTATGTCTGGATCCTTT-CCCTAAGACCACAGATAGCTCCAGGGAGT---CCCACCTCCTTGGCTATGGAAA-----T-ATGCTCAGCCCTGGTTTCAGAGAAGCCT--GGACTCCACTCTGGACCCCATGAGATGATATGCGCTGGTACTCCAGG------CCTTAAATGGCCTGGGAAGCCTTAGTGGATTTTCATT--GTTT-ATTTTCAGCATTCCCGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30894936 309 + 172585720 ATGTGCTAATCAAGAGCAAGATGTTCTGGATTCTT----AAAA------CT-CCCCCTACAAGGACCAATC--C--AGAGATAATTTATTGATCAGTGATCACAGCTGGTACCCCAAAGCCGTGTACGTCTGGATCC-TT-CTCTAAGACCACAGATAGCTCCAGGGAGT---CCCACATCCTTGGCTATGGAAA-----T-ATGCTCAGCCCTGGTTTCAGAGAAGCCT--GGACTCCACTCTGGACCCCATGAGATGATATGCGCTGGTACTCCAGG------CCTTAAATGGCTTGGGAAGCCTCAGTGGATTTTCATT--GTTT-ATTTTCAGCATTGCCGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30184414 309 - 170955103 ATGTGCTAATCAAGAGCAAGATGTTCTGGATTCTT----AAAA------CT-CCCCCTACAAGGACCAATC--C--AGAGATAATTTATTGATCAGTGATCACAGCTGGTACCCCAAAGCCGTGTATGTCTGGATCC-TT-CTCTAAGACCACAGATAGCTCCAGGGAGT---CCCACATCCTTGGCTATGGAAA-----T-ATGCTCAGCCCTGGTTTCAGAGAAGCCT--GGACTCCACTCTGGACCCCATGAGATGATATGCGCTGGTACTCCAGG------CCTTAAATGGCTTGGGAAGCCTCAGTGGATTTTCATT--GTTT-ATTTTCAGCATTGCCGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     433269 309 +   1495729 ATGTGCTAATCAAGAGCAAGATGTTCTGGATTCTT----AAAA------CT-CCCCCTACAAGGACCAATC--C--AGATATAATTTATTGATCAGTGATCACAGCTGGTACCCCAAAGCCGTGTATGTCTGGATCC-TT-CTCTAAGACCACAGATAGCTCCAGGGAGT---CCCACATCCTTGGCTATGGAAA-----T-ATGCTCAGCCCTGGTTTCAGAGAAGCCT--GGACTCCACTCTGGACCCCATGAGATGATATGCGCTGGTACTCCAGG------CCTTAAATGGCTTGGGAAGCCTCAGTGGATTTTCATT--GTTT-ATTTTCAGCATTGCCGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     536912 309 -    863181 ATGTGCTAATCAAGAGCAAGATGTTCTGGATTCTT----AAAA------CT-CCCCCCACAAGGACCAATC--C--AGAGATAATTTATTGATCAGTGATCACAGCTGGTACCCCAAAGCCGTGTATGTCTGGATCC-TT-CTCTAAGACCACAGATAGCTCCAGGGAGT---CCCACATCCTTGGCTATGGAAA-----T-ATGCTCAGCCCTGGTTTCAGAGAAGCCT--GGACTCCACTCTGGACCCCATGAGATGATATGCGCTGGTACTCCAGG------CCTTAAATGGCTTGGGAAGCCTCAGTGGATTTTCATT--GTTT-ATTTTCAGCATTGCCGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29683681 307 -  71996105 ATGTGCTAATCAAGAGCAAGATGTTCTGGATTCTT----AAAA------CT-CCCCCCACAAGGACCAATC--C--AGAGATAATTTATTGATCAGTGATCACAGCTGGTACCCCAAAGCCATTTATGTCTGGATCC-TT-CTCTAAGACCACAGATAGCTCCAGGGAGT---CCCACATCCTTGGCTATGGAAA-----T-ATGCTCAGCCCTGGTTTCAGAGAAGCCT--GGACTCCACTCTGGACCCCATGAGATGATATGCGCTGGTACTCCAGG------CCTTAAATGGCTTGGGAAGCCTC--TGGATTTTCATT--GTTT-ATTTTCAGCATTGCCGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     419142 309 -    735854 ATGTGCTAATCAAGAGCAAGATGTTCTGGATTCTT----AAAA------CT-CCCCCCACAAGGACCAATC--C--AGAGATAATTTATTGATCAGTGATCACAGCTGGTACCCCAAAGCTGTGTATGTCTGGATCC-TT-CTCTAAGACCACAGATAGCTCCGGGGAGT---CCCACATCCTTGGCTATGGAAA-----T-ATGCTCAGCCCTGGTTTCAGAGAAGCCT--GGACTCCACTCTGGACCCCATGAGATGATATGCGCTGGTACTCCAGG------CCTTAAATGGCTTAGAAAGCCTCAGTGGATTTTCATT--GTTT-ATTTTCAACATTGCCGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     325758 309 -   1829203 ATGTGCTAATCAAGAGCAAGATGTTCTGGATTCTT----AAAA------CT-CCCCCCACAAGGACCAATC--C--AGAGATAATTGATTGATCAGTGATCACAGCTGGTACCCCAAAGCCGTGTATGTCTGGATCC-TT-CTCTAAGACCACAGATAGCTCCAGGGAGT---CCCACATCCTTGGCAACGGAAA-----T-ACACTCAGCCCTGGTTTCAGAGAAGCCT--GGACTCCACTCTGGACCCCATGAGATGATATGCGCTGGTACTCCAGG------CCTTAAATGGCTTGGGAAGCCTCAGTGGATTTTCATT--GTTT-ATTTTCAGCATTGCCGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30514739 300 + 171630274 CTGTGCTGATCAAGAGCAGGATGTTCTGGGTTCTTTT-AAAAA------CT-CCCCTCACAAGGACCAATC--C--AGAGAGAATTTATTGATCAGTGACCACAGCTGGTACCCCAGAGCCA--TATGTCTGGATCC-TT-CCCTAAGACCACAGATAGCTCCAGGGACT---CCCACCACATTGGCCACGGAAA-----T-ATGCTCCACTCTGGTTTCAGAGAAGCCT--GGACTC-----TGGACCCCGTGAGATGATATGCACTGGCACTCCAGG------CCTTAAATGGCC-AGGAAGCCTCAGTGGACTTTCA------TT-ATTTTCAGCATTTCCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           318378 306 +    515838 ATGTGCTGATCAAGAGCAGGATGTTCTGGGTTCTTTT-AAAAAAAACTCCT-CCCCTCACAAGGACCAATC--C--AGAGAGAATTTATTGATCAGTGGTCACAGCTGGTACCCCAAAGCCA--TATGTCTGGATCC-TT-CCCTAAGACCAGAGAGAGCTCCAGGGACT---CCCACCAAATTGGCTACGGAAA-----T-ATGCTCCACTCTGGTTTCAGAGAAGCCT--GGACTC-----TGGACCCCATGAAATGATATGCACTGCCACTCCACG------CCTTCAACGACC-GGGAAGCCTCAGTGGACTTTTA------TT-ATTTTCAGCATTTCCGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     949169 298 -   1771730 ATGTGCTGATCAAGAGCAGGATGTTCTGGGTTCTTTT-AAAAA------CT-CCTTCCACAAGGACCAATC--C--AGAGAGAATTTATTGATCAGTGATCACAGCTGGTACGCCAAAGCCG--TATGTCTGGATCC-TT-CCCTAAGACCACAGATAGCTCCAGGGACT---CCCACCACGTTGGCTACGGATA-----T-ATGCTCCACTCTGGTTTCAGAGAAGCCT--GGACTC-------GACCCCGTGAGATGATATGCGCTGGCACTCCAGG------CCTTAAATGGCA-GGGAAGCCTCAGTGGACTTTGA------CT-ATTTTCAGCATTTCCGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     133028 295 -    486031 ATGTGCTGATCAAGAGCAGGATGTTCTGGGTTCTTTT-AAAAA------TT-CCCCTCACAAGGACCAGTC--C--AGAGAGAATTTATTGATCAGTGATCACTGCTGGTACCCCAAATCCA--TATGTCTGGATCC-TT-CCCTAAGACCACAGATAGCTCCAGGA------CTCACCACGTTGGCTACGGAA--------ACGCTCCACTCTGGTTTCAGAGAAGCCT--GGACTC-----TGGACCCTGTGAGATGATATGTGCTGGCACTCCAGG------CCTTAAATGGCT-GGGAAGCCTCAGTGGACTTTCA------GT-ATTTTCAGCATTTCCGT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     382482 310 -   1411461 ATGTGCTGATCAAGAGCAGGATGTGCTAGATTGTTTT-AAAAA------CT-CCCCTCACAAGGAACAAGC--CAGAGAGATAATTTATTGATCACTGATCACACCTATTAGCCCAAAGCCACATGTATCTAGGTCC-TTCCCCCAAGACCATAGATGGTTCCAGGGATT------------TTGGCTATGGAGAGCTTGT-ATGCTTGGCCTCCGTTTCAGAGGAACAT--GAACTCCGCTCTGGACCTCATGAGATGATTCCCACCGGCACTCCAGG------CCTTAAATGGTCTAGAAAG-CTCAGTGGATTTTCACT--GTTT-ATTTTCAGGATTTTCAT
i proCoq1.NW_012149775v1   I 360 C 0
s otoGar3.GL873550           373240 320 +  18854210 ATGTGCTGATCAAAATCACTATGTACTAGACTTTTTT--AAAA------CT-CCTCTCGAAAGGAGCAATC--C--AGAGATAATTTACTGATCAGTGATCATAGCTGTTACCCCAAAGCCACCTGTATCTAGATCC-TTCCCCCAAGACCATAGATGGTTCCAGCGAGTCCCCCTGCCTCCTTGGCTATGGAAATCTCAT-ACACTTGGCCTTGGTTTCAGAGAAACAT--GAACTCTACTCTGGACCTCATGAGATGATTTCTACTGGTATTCTAGG------CCTTAAAGGGTCCCAGAAG-TTCAGTTAATTTTCCCT--GTTTAATTTTCAGTATATTCAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58128368 277 -  94987271 --------GTCAAGAGCAAGATGTTC-GGGTTGTTTT-AAAAA------CT-TCCTTCACAAGGACTGCTCTGC--AGAGGTAATTTATTGAT-------CACAGTCACTATCT--GAGTCAT-AGTACCTAGATGC-TT-TCTGAAA--CACAGATGTCCCTGGGGAGT---CCTACCTACTCAGGTCTGGGTT-----TGAGGCT---------------AGAAACTTTGGTACTC--------ACGCTAGGAGATGAT-TCTACCAGCACTCCAGGACACAAACTTACACGGCCTTGGAAACTTCTGTGGGTCATGACTACATCC-ATTCTT-GCATCTTT--
i mm10.chr17               C 0 C 0
s canFam3.chr35            26387059 294 +  26524999 -GTCACCCATCTAGGGCAGGACAGTCTGGATTCCCTTTACTGT------CT-CCCCTCCCAGGGCCCCACC--C--TCAGG----TCATTGATCAGCAGTCACAGGTT-TGCTCCGAAGCCACATGCACCCC-ATCC-CC-CCCCAAGAC--------GCTCCAGGGGCT---CCTGCCCCCTTAGATGTGGAATGCTG-A-ATGTTCAACCCTTGTCTGGGAGAAGCTC--GTGC-CTACTCTGGACCTGGCAA-------TCCCATGGCACTCCGGGAGGCTTGTTCAAACAGTC-TGGAATCCTCAGTGGATCTCCACTGTGTTC-ACTTCCA-CAT------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               425645 949 + 123392446 I

a score=913556.000000
s hg38.chr6_GL000254v2_alt  1529408  67 +   4827813 GTATGCTTAACTC-TGAGTT-GGGGTGGG---GTAGGTCTGTTTAAAATGCC-----------------------------------------------------------AGGGAAGGTGGGCAGCAGAG
s panTro5.chr6             30399583  67 + 175400573 GTATGCTTAACTC-TGAGTT-GGGGTGGG---GTAGGTCTGTTTAAAATGCC-----------------------------------------------------------AGGGAAGGTGGGCAGCAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30633877  67 + 173848474 GTATGCTTAACTC-TGAGTT-GGGGTGGG---GTAGGTCTGTTTAAAATGCC-----------------------------------------------------------AGGGAAGGTGGGCAGCAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     341630  67 +   2037526 GTATGCTTAACTC-TGAGTT-GGGGTGGG---GTAGGTCTGTTTAAAATGCC-----------------------------------------------------------AGGGAAGGTGGGCAGCAGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75004920  67 + 122973662 GTATGCTTAACTC-TGAGTT-GGGGTGGG---GTAGGTCTGTTTAAGATGCC-----------------------------------------------------------AGGGAAGGTGGGCAGCAGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30895245  67 + 172585720 GTATGCTTAACTC-TGAGAT-GGGGTGGG---GTCGGTCTGTTTAAAACGCC-----------------------------------------------------------AGGGAAGGCGGGCAGCAGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30184723  67 - 170955103 GTATGCTTAACTC-TGAGAT-GGGGTGGG---GTCGGTCTGTTTAAAACGCC-----------------------------------------------------------AGGGAAGGCGGGCAGCAGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     433578  67 +   1495729 GTATGCTTAACTC-TGAGAT-GGGGTGGG---GTCGGTCTGTTTAAAACGCC-----------------------------------------------------------AGGGAAGGCGGGCAGCAGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     537221  67 -    863181 GTATGCTTAACTC-TGAGAT-GGGGTGGG---GTCGGTCTGTTTAAAACGCC-----------------------------------------------------------AGGGAAGGCGGGCAGCAGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29683988  67 -  71996105 GTATGCTTAACTC-TGAGAT-GGGGTGGG---GTCGGTCTGTTTAAAACTCC-----------------------------------------------------------AGGGAAGGCGGGCAGCAGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     419451  67 -    735854 GTATGCTTAACTC-TGAGTT-GGGGTGGG---GCAGGTCTGTTTAAAATGCC-----------------------------------------------------------AGGGAAGGCGGGCAGCAGAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     326067  67 -   1829203 GTATGCTTAACTC-TGAGTT-GGAGTGGG---GTAGGTCTGTTTAAAACGCC-----------------------------------------------------------AGGGAAGGCGGGCAGCAGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30515039 126 + 171630274 GTATGCTTAACTC-TGAGTT-AGGGTGGG---GTAGGTCTGTTTAAAATGCCTACTATCTGTTTAAAATGCCTAACTCTGAGTTAGGGTGGGGTAGGTCTGTTTAAAATGTAGGGAAGGTGGGCAGTAGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           318684  67 +    515838 GTATGCTTAAATC-TGAGTT-CGGGTGGG---GCAGGTCTGTTTAAAATGCC-----------------------------------------------------------AAGGAAGGTGGGCAGTAGAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     949467  67 -   1771730 GTATGCTTAACTC-TGAGTT-GGGGTTGG---GCAGGTCTGTTTAAAATGCC-----------------------------------------------------------AGGGAAGGTGAGCAGTAAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     133323  68 -    486031 GTATGCTTAACTCTTGAGTT-GGGGTGGA---GTAGGCCTGTTTAAAATGCC-----------------------------------------------------------AGGGAAGGTGGGCAGTAGAG
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               426594  65 + 123392446 GTATGCTTAACTC-TGAGGT-GGGCCGGG---GCAGGCCTGTGTAAAATGCC-----------------------------------------------------------AGGGAAG--GGGCAGCAGAG
i micMur3.chr6             I 949 I 386
s proCoq1.NW_012149775v1     382792  67 -   1411461 GTACGC-TAACTC-TGAGTTGGGGTCGGG---GTAGGTCTGTATAAAATACC-----------------------------------------------------------AGGGAAGGTGGGCAACAGAG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           373560  70 +  18854210 ATATGCTTAACTC-TGAGTT-GGAATGGGAGAGTAGCTCTGTTTAAAATACC-----------------------------------------------------------AGGGAAGGTGAGCAACAGAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58128645  65 -  94987271 GCATATTTAACTC-TTG--T-GGGGTAAG---GAAAAGTGATTTAAGACACC-----------------------------------------------------------AGGAAAGGTAGGCAACAGAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26387353  42 +  26524999 ---------------------------GT---GTGGCTCTGAGTTAGGTGCC-----------------------------------------------------------AGGGAGGGCAGGCAGCACAG
i canFam3.chr35            C 0 C 0

a score=995445.000000
s hg38.chr6_GL000254v2_alt  1529475 87 +   4827813 TGGATTTGTGCAAGAAGGAACCTGGGGGG-TTTAAGGACAGCAAAATGATCTT-AGGCGTAATTGACTGGTTTTTCTGAGGT--CTTGCCA------
s panTro5.chr6             30399650 88 + 175400573 TGGATTTGTGCAAGAAGGAACCTGGGGGGGTTTAAGGACAGCAAAATGATCTT-AGGCGTAATTGACTGGTTTTTCTGAGGT--CTTGCCA------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30633944 88 + 173848474 TGGATTTGTGCAAGAAGGAACCTGGGGGGGTTTAAGGACAGCAAAATGATCTT-AGGCGTAATTGACTGGTTTTTCTGAGGT--CTTGCCA------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     341697 88 +   2037526 TGGATTTGTGCAAGAAGGAACCTGGGGGGGTTTAAGGACAGCAAAATGATCTT-AGGCGTAATTGACTGGTTTTTCTGAGGT--CTTGCCA------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75004987 85 + 122973662 TGGATTTGTGCAAGAAGGAACCTGGGGGG-TTTAAGGACAGCAAAATGATCTT-AGGCGTAATCGAC--GTTTTTCCAAGGC--CTTGCCA------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30895312 87 + 172585720 TGGATTTGTGCAAGAAGGAACCTGTAGGG-TTTAAGGACAGCAAAATGATCTT-AGGCATAATCAACTGGTTTTTCCAAGGT--CTTGCCA------
i rheMac8.chr4             C 0 M 20
s macFas5.chr4             30184790 87 - 170955103 TGGATTTCTGCAAGAAGGAACCTGTAGGG-TTTAAGGACAGCAAAATGATCTT-AGGCATAATCAACTGGTTTTTCCAAGGT--CTTGCCA------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     433645 87 +   1495729 TGGATTTGTGCAAGAAGGAACCTGTAGGG-TTTAAGGACAGCAAAATGATCTT-AGGCATAATCAACTGGTTTTTCCAAGGT--CTTGCCA------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     537288 87 -    863181 TGGATTTGTGCAAGAAGGAACCTGTAGGG-TTTAAGGACAGCAAAATGATCTT-AGGCATAATCAACTGGTTTTTCCAAGGT--CTTGCCA------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29684055 87 -  71996105 TGGATTTGTGCAAGAAGGAACCTGTAGGG-TTTAAGGACAGCAAAATGATCTT-AGGCATAATCAACTGGTTTTTCCAAGGT--CTTGCCA------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     419518 87 -    735854 TGGATTTGTGCAAGAAGGAACCTGTAGGG-TTTAAGGACAGCAAAATGATCTT-AGGCATAATCAACTGGTTTTTCCAAGGT--CTTGCCA------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     326134 87 -   1829203 TGGATTTGTGCAAGAAGGAACCTGTGGGG-TTTAAGGACAGCAAAATGATCTT-AGGCGTAATCAACTGGTTTTTCCAAGGT--CTTGCCA------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30515165 86 + 171630274 TGGATTTGAGCAAGGAGGAACCTATGGGG-TTTAAGGAGAGCAAAATGA-TTT-AGGCGTAATCAACTGTTTTTTCCAAGGT--CTCGCCA------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           318751 87 +    515838 TGGATTTGAGCAAGAAGGAACCTGTGGGG-TTTAAGGAGAACAAAACGACCTT-AGGCATAATCGACTTGTTTTTCCAAAGT--CTCGCCA------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     949534 87 -   1771730 TGGATTTGAACAAGGAGGAACCTGTGGGA-TTTAAGGAGAGCAAAATGACCTT-AGGCGTAATCGACTGGTTTTTCCAAGGT--CTCACCA------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     133391 87 -    486031 TGGATTTGGGCAAGGAGGAACCTGTGGGG-TTTAAGGAGAGCAAAATAATCTT-AGGCGTAATTGACTGGTTTTTCCAAGGT--CTCGCCA------
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     382859 84 -   1411461 ---ATCTGGGCAAGGGGGAACCTACAAGG-TTTGAGGACAGCGAAATGGTCTC-AGGCGTAATTGACTGGTCTTTCCCAGGT--CTTGCCG------
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           373630 80 +  18854210 TAGATTTGGGCAAGGGGGAACC--------TTTGGGGATAGCAAAATGGTCTT-AGACATAATTGACTGGTCTTTCCCAGGC--CTTGCTA------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58128710 86 -  94987271 TGGTTTTGGGCACGGGGTACCTCAAC----TTCGAGGACAGCAAAAACAGCTTCAGATGTGATGGAA-AGTCTACCTGTGGGCACTGGCTA------
i mm10.chr17               C 0 I 2
s canFam3.chr35            26387395 64 +  26524999 AGGACATGGGTAGGG--------GCCAGG-GGTGAGGACAGCAAGTGGGCCTT----------------------CTCAGGA--GCAGCCAGTGGCA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               426659 386 + 123392446 I

a score=268859.000000
s hg38.chr6_GL000254v2_alt  1529562 25 +   4827813 CACTGGGCAAGAAAATGCTGC-ATCG
s panTro5.chr6             30399738 25 + 175400573 CACTGGGCAAGAAAATGCTGC-ATCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30634032 25 + 173848474 CACTGGGCAAGAAAATGCTGC-ATCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     341785 25 +   2037526 CACTGGGCAAGAAAATGCTGC-ATCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75005072 25 + 122973662 CACTGGGCAAGAAAATGCTGC-GTCA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30184877 25 - 170955103 CGGTGGGCAAGAAAATGCTGT-GTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     433732 25 +   1495729 CAGTGGGCAAGAAAATGCTGT-GTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     537375 25 -    863181 CGGTGGGCAAGAAAATGCTGT-GTCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29684142 25 -  71996105 CGGTGGGCAAGAAAATGCTGT-GTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     419605 25 -    735854 CGGTGGGCAAGAAAATGCTGT-GTCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     326221 25 -   1829203 CCGTGGGCAAGAAAATGCTGT-GTCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30515251 25 + 171630274 CGCTGGGCAAGAAAATGCTGC-ATCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           318838 25 +    515838 CACCGGGCAAGAAAATGCTGC-ATCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     949621 25 -   1771730 CGCTGGGCAAGAAAATGCTGC-ATCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     133478 25 -    486031 CGCTGGGCAAGAAAATGATGC-ATCA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     382943 25 -   1411461 CGCTGGGCAAGAGAATGCTGC-CTCA
i proCoq1.NW_012149775v1   C 0 I 15
s otoGar3.GL873550           373710 25 +  18854210 AACTGGGCAAGAAAATGCTGC-CTCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58128798 26 -  94987271 AACTGAACCAGAAAATGCTGCTGCCA
i mm10.chr17               I 2 C 0
s canFam3.chr35            26387459 24 +  26524999 CAGGTGCCAACACAACGCCAA-CCC-
i canFam3.chr35            C 0 C 0
e micMur3.chr6               426659 386 + 123392446 I
e rheMac8.chr4             30895399 20 + 172585720 M

a score=135885.000000
s hg38.chr6_GL000254v2_alt  1529587 13 +   4827813 GGCCC-TT-ATTCCA
s panTro5.chr6             30399763 13 + 175400573 GGCCC-TT-ATTCCA
i panTro5.chr6             C 0 I 2
s panPan2.chr6             30634057 13 + 173848474 GGCCC-TT-ATTCCA
i panPan2.chr6             C 0 I 2
s gorGor5.CYUI01015528v1     341810 13 +   2037526 GGCCC-TT-ATTCCA
i gorGor5.CYUI01015528v1   C 0 I 2
s nomLeu3.chr1a            75005097 14 + 122973662 GGCCCTTT-ACTCCA
i nomLeu3.chr1a            C 0 I 2
s macFas5.chr4             30184902 13 - 170955103 GGCCC-TT-ACTCCA
i macFas5.chr4             C 0 I 2
s macNem1.NW_012012100v1     433757 13 +   1495729 GGCCC-TT-ACTCCA
i macNem1.NW_012012100v1   C 0 I 2
s cerAty1.NW_012002535v1     537400 13 -    863181 GGCCC-TT-ACTCCA
i cerAty1.NW_012002535v1   C 0 I 2
s chlSab2.chr17            29684167 13 -  71996105 GGCCC-TT-ACTCCA
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012107142v1     419630 13 -    735854 GGCCC-TT-ACTCCA
i manLeu1.NW_012107142v1   C 0 I 2
s colAng1.NW_012115577v1     326246 13 -   1829203 GGCCC-TT-ACTCCA
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30515276 13 + 171630274 GGCCC-TT-ACTCCA
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           318863 13 +    515838 GGCCC-TT-ACTCCA
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     949646 13 -   1771730 GGCCC-TT-ACTCCA
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496901v1     133503 14 -    486031 GGCCC-TTAACTCCA
i aotNan1.NW_018496901v1   C 0 I 1
s otoGar3.GL873550           373735 13 +  18854210 GCTCC-TT-ATTCAA
i otoGar3.GL873550         C 0 I 4
s mm10.chr17               58128824 13 -  94987271 AGGCC-CT-GCTCAA
i mm10.chr17               C 0 I 2
s canFam3.chr35            26387483 13 +  26524999 GCCTC-TT-CTTCCA
i canFam3.chr35            C 0 I 4
e micMur3.chr6               426659 386 + 123392446 I
e proCoq1.NW_012149775v1     382968 15 -   1411461 I
e rheMac8.chr4             30895399 20 + 172585720 M

a score=824041.000000
s hg38.chr6_GL000254v2_alt  1529600  76 +   4827813 GAGAGTGCAGAGCTGGGG---------------------------------------CCAA-GGTCGTGGTCAAAAAGGAAAGGAGCCCTCATGGACTCCAGGGTCA-GAAGTTCCC
s panTro5.chr6             30399778  76 + 175400573 GAGAGTGCAGAGCTGGGG---------------------------------------CCAA-GGTCGTGGTCAAAAAGGAAAGGAGCCCTCATGGACTCCAGGGCCA-GAAGTTCCC
i panTro5.chr6             I 2 C 0
s panPan2.chr6             30634072  76 + 173848474 GAGAGTGCAGAGCTGGGG---------------------------------------CCAA-GGTCGTGGTCAAAAAGGAAAGGAGCCCTCATGGACTCCAGGGCCA-GAAGTTCCA
i panPan2.chr6             I 2 C 0
s gorGor5.CYUI01015528v1     341825  76 +   2037526 GAGAGTGCAGAGCTGGGG---------------------------------------CCAA-GGTCGTGGTCAAAAAGGAAAGGAGCCCTCATGGACTCCAGGGTCA-GAAGTTCCC
i gorGor5.CYUI01015528v1   I 2 C 0
s nomLeu3.chr1a            75005113  76 + 122973662 GAGAGTGCAGAGCTGGGG---------------------------------------CCAA-GGTCGTGGTCAAAAAGGAAAGGAGCCCTCATGGACTCCAGGATCA-GAAGTTCCC
i nomLeu3.chr1a            I 2 C 0
s macFas5.chr4             30184917  76 - 170955103 GAGAGTGCAGAGCCGGGG---------------------------------------CCAA-GGTAGTGGTCAAAAAGGAAAGGAGCCCTCATGGACTCCAGGGCCA-GAAGTTCCC
i macFas5.chr4             I 2 C 0
s macNem1.NW_012012100v1     433772  76 +   1495729 GAGAGTGCAGAGCCGGGG---------------------------------------CCAA-GGTAGTGGTCAAAAAGGAAAGGAGCCCTCATGGACTCCAGGGCCA-GAAGTTCCC
i macNem1.NW_012012100v1   I 2 C 0
s cerAty1.NW_012002535v1     537415  76 -    863181 GAGAGTGCAGAGCCAGGG---------------------------------------CCAA-GGTAGTGGTCAAAAAGGAAAGGAGCCCTCATGGACTCCAGGGCCA-GAAGTTCCC
i cerAty1.NW_012002535v1   I 2 C 0
s chlSab2.chr17            29684182  76 -  71996105 GAGAGTGCAGAGCCAGGG---------------------------------------CCAA-GGTAGTGGTCAAAAAGGAAAGGAGCCCTCACGGACTCCAGGGCCA-GAAGTTCCC
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012107142v1     419645  76 -    735854 GAGAGTGCAGAGCCGGGG---------------------------------------CCAA-GGTAGTGGTCAAAAAGGAAAGGAGCCCTCATGGACTCCAGGGCCA-GAAGTTCCC
i manLeu1.NW_012107142v1   I 2 C 0
s colAng1.NW_012115577v1     326260  75 -   1829203 -AGAGTGCAGAGCTGGGG---------------------------------------CCAA-GGTAGTGGTCAAAAAGGAAAGGAGCCCTCATGGACTCCAGGGTCA-GAAGTTCCC
i colAng1.NW_012115577v1   I 1 C 0
s calJac3.chr4             30515290  75 + 171630274 -AGAATGCTGAGCTGGGG---------------------------------------CCAA-GGTCATGGTCAAAAAGGAAAGGAGCCCTCATGGACTCCAGAGTTA-GAAGTTCCC
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           318877  75 +    515838 -AGAATGCTGAGCTGGGG---------------------------------------CCAA-GGTCAAGGTCAAAAAGGAAAGGAGCCCTCATGGACTCCAGAGTCA-GAAGTTCCT
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     949660  75 -   1771730 -AGAATGCTGAGCTGGGG---------------------------------------CCAA-GGTCATGGTCAAAAAGGAAAGGAGCCCTCATGGGCTCCAGAGTCA-GAAGTTCCT
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496901v1     133518  75 -    486031 -AGAATGCTGAGCTGGGA---------------------------------------CCAA-GGTCATGGTCAAAAAGGAAAGGAGCCCTCATGGACTCCAGAGTCA-GAAGTTCCT
i aotNan1.NW_018496901v1   I 1 C 0
s proCoq1.NW_012149775v1     382983  76 -   1411461 GACAGTGCAGAGCTGGGG---------------------------------------CCAA-GGCAGTGGTCAAAAAGGAAAGGAGCCCTCGTGGTCTTCAGGGTGA-GAAGTTCCC
i proCoq1.NW_012149775v1   I 15 C 0
s otoGar3.GL873550           373752 112 +  18854210 GAAAGTGCGGGG--GGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GACATTGATCTATAGGGAAA-AAGCCCTCATTGTCTCTAGAGTCA-GAAGTTCCG
i otoGar3.GL873550         I 4 C 0
s mm10.chr17               58128839  72 -  94987271 AAGAACACAGGGACAAGA---------------------------------------CAAATGGGTGTGTTCAGGAAAG-AGGGAGTCATT-TGGTCTTCAGAGCAG-GAAACC---
i mm10.chr17               I 2 C 0
s canFam3.chr35            26387500  73 +  26524999 GAGAGTGCCAAGCTGGGC---------------------------------------CAAA-GGCCATGGGTGGTAGGGACA----TCCTCATGGGCTTTGGGGTCACGAAGGGTGC
i canFam3.chr35            I 4 C 0
e micMur3.chr6               426659 386 + 123392446 I
e rheMac8.chr4             30895399  20 + 172585720 M

a score=2547947.000000
s hg38.chr6_GL000254v2_alt  1529676 224 +   4827813 TCGGGAAACCAGCAGGAGGTGGGAAAAGAGCCCCA-TTAGGGCAGTAGATG--GAGCAACAGCACTGAGTGAGATTTCAGGGGGCCACAGCAAT-GGGGAGGTGGCTACCAGTGGATATGGGGTCC---------CCTGCTCCAGGTGCTTAGGCCAGGCATCCCGTCCCCCCATT--G-------------------------------------------------------------------AGAGTCCTGGAATTCCAAAGAAGTGAAGCAT--CTG-AGGGT-TGGGGCTGGGGGCAGATGTCA
s panTro5.chr6             30399854 224 + 175400573 TTGGGAAACCAGCAGGAGGTGGGAAAAGATCCCCA-TTAGGGCAGTAGATG--GAGCAATAGCACTGAGTGAGATTTTAGGGGGCCACAGCAAT-GGGGAGGTGGCTGCCAGTGGATATGGGGTCC---------CCTGCTCCAGGTGCTTAGGCCAGGCATCCCGTCCCCCCATT--G-------------------------------------------------------------------AGAGTCCTGGAATTCCAAAGAAGTGAAGCAT--CTG-AGGGT-TGGGGCCGGGGGCAGATGTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30634148 224 + 173848474 TTGGGAAACCAGCAGGAGGTGGGAAAAGATCCCCA-TTAGGGCAGTAGATG--GAGCAATAGCACTGAGTGAGATTTTAGGGGGCCACAGCAAT-GGGGAGGTGGCTGCCAATGGATATGGGGTCC---------CCTGCTCCAGGTGCTTAGGCCAGGCATCCCGTCCCCCCATT--G-------------------------------------------------------------------AGAGTCCTGGAATTCCAAAGAAGTGAAGCAT--CTG-AGGGT-TGGGGCCGGGGGCAGATGTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     341901 223 +   2037526 TCGGGAAACCAGCAGGAGGTGGGAAAAGAGCCCCA-TTAGGGCAGTAGATG--GAGCAATAGCACTGAGTGAGATTTCAGGGGGCCACAGCAAT-GGGGAGGTGGCTGCCAGTGGATATGGGGTCC---------CCTGCTCCAGGTGCTTAGGCCAGGCATCCTGT-CCCCCATT--G-------------------------------------------------------------------AGAGTCCTGGAATTCCAAAGAAGTGAAGCAT--CTG-AGGGT-TGGGGCCGGGGGCAGATGTCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75005189 226 + 122973662 TCGGGAAACCAGCAGGAGGTGGGAGAAGAGCCCTAGTTGGGGCAGTAGATG--GAGCAATAGCACTGAGTGAGATCTCAGGGGGCCACAGCGAT-GGGGAGGTGGCTGCCAGTGGATATGGGGTCC---------CCTGCTCCAGGTGCTCAGGCCAGGCATCCCTTCCCTCCATT--G-------------------------------------------------------------------AGAGTCCTAGAATTCCAAAGAAGTGAAGCAT--CTG-AGGGTGTGGGGCCCGGGGCAGATATCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30895419 225 + 172585720 TCGGGAAACTAGCAGGAGGTGGGAGAAGAGCCCCA-TTAGGGCAGTAGATG--GAGCAACAGCACTGAGTGAGACCTCAGGGGGCCAGAGCGAC-GGGGAGGTGGCTGCCAGTGGATATGGGGTCC---------CCTGCTCCAGGTGCTCAGGCCAGGCATCCCTTCCCCCCATT--G-------------------------------------------------------------------AGAGTCCTGGAATTCCAAAGAAGTGAAGCAT--CTG-Agggtgtggggccaggggcagatgtca
i rheMac8.chr4             M 20 C 0
s macFas5.chr4             30184993 225 - 170955103 TCGGGAAACTAGCAGGAGGTGGGAGAAGAGCCCCA-TTAGGGCAGTAGATG--GAGCAACAGCACTGAGTGAGACCTCAGGGGGCCAGAGCGAC-GGGGAGGTGGCTGCCAGTGGATATGGGGTCC---------CCTGCTCCAGGTGCTCAGGCCAGGCATCCCTTCCCCCCATT--G-------------------------------------------------------------------AGAGTCCTGGAATTCCAAAGAAGTGAAGCAT--CTG-Agggtgtggggccaggggcagatgtca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     433848 225 +   1495729 TCAGGAAACTAGCAGGAGGTGGGAGAAGAGCCCCA-TTAGGGCAGTAGATG--GAGCAACAGCACTGAGTGAGACCTCAGGGGGCCAGAGCGAC-GGGGAGGTGGCTGCCAGTGGATATGGGGTCC---------CCTGCTCCAGGTGCTCAGGCCAGGCATCCCTTCCCCCCATT--G-------------------------------------------------------------------AGAGTCCTGGAATTCCAAAGAAGTGAAGCAT--CTG-ACGGTGTGGGGCCAGGGGCAGATGTCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     537491 225 -    863181 TCGGGAAACTAGCAGGAGGTGGGAGAAGAGCCCCG-TTAGGGCAGTAGATG--GAGCAACAGCACTGAGTGAGACCTCAGGGGGCCAGAGCGAC-GGGAAGGTGGCTGCCAGTGGATATGGGGTCC---------CCTACTCCAGGTGCTCAGGCCAGGCATCCCTTCCCCCCACT--G-------------------------------------------------------------------AGAGTCCTGGAATTCCAAAGAAGTGAAGCAT--CTG-Agggtgtggggccaggggcagatgtca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29684258 225 -  71996105 TCGGGAAACTAGCAGGAGGTGGGAGAAGAGCCCCA-TTAGGGCAGTAGATG--GAGCAACAGCACTGAGTGAGACCTTAGGGGGCCAGAGCGAC-GGGGAGGTGGCTGCCAGTGGATATGGGGTCC---------CCTGCTCCAGGTGCTCAGGCCAGGCATCCCTTCCCCCCATT--G-------------------------------------------------------------------AGAGTCCTGGAATTCCAAAGAAGTGAAGTAT--CTG-agggtgtagggccaggggcagatgtca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     419721 225 -    735854 TCGGGAAACTAGCAGGAGGTGGGAGAAGAGCCCCG-TTAGGGCAGTAGATG--GAGCAACAGCACTGAGTGAGACCTCAGGGGGCCAGAGCGAC-GGGGAGGTGGCTGCCAGTGGATATGGGGTCC---------CCTGCTCCAGGTGCTCAGGCCAGGCATCCCTTCCCCCCATT--G-------------------------------------------------------------------AGAGTCCTGGAATTCCAAAGAAGTGAAGCAT--CTG-ACGGTGTGGGGCCAGGGGCAGATGTCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     326335 157 -   1829203 TTGGGAAACCAGCAGGATGTGGAAGAAGAGCCCCA-TTAGGGCAGTAGATG--GAACAACAGCACTGAGTGAGATCTCAGGGGGCTAGAGTGAC-GGGGAGGTGGCTGCCAGTGGATATGGGGTCC---------CCTGCTCCAGGTGCTCA--------------------------------------------------------------------------------------------------------------------------------------------GGCCAGGGGCAGATGTCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30515365 221 + 171630274 ATGGAAAACCAGCAGGAGGTGGGAGAAGAGCCCAA-TTAGGGCAGTAGATG--GAGCAATAGCACTGAGTGAGATCTC----GGCCACAGCAACTGGGGTGGTGGCTGGCAGTGGATATGGGGTCC---------CCTGCTCCAGGTGCTCAGGCCAGGCATCCCTTCCCCCCATT--G-------------------------------------------------------------------AGAGTCCTGGAATTCCAAAGAAGTAAAGCAT--CTA-AGGGTGTGGGGCC-GGGGCAGATGTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           318952 221 +    515838 ACGGGAAACCAGCAGGAGGTGGGAGAAGAGCCCAG-TTAGGGCAGGAGATG--GAGAAATAGCACTGAGTGAGATCTC----GGCCACAGCAACCGGGGGGGTGGCTGGCAGTGGATATGGGGTCC---------CCTGCTCCAGGTGCTCAGGCCAGGCATCCCCTCCCCGCATT--G-------------------------------------------------------------------AGAGTCCTGGAATTCC-AAGAAGTAAAGCAT--CTA-AGGGTGTGGGGCCAGGGGCAGATGTCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     949735 222 -   1771730 ACGGGAAACCAGCAGGAGGTGGGAGAAGAGCCCAG-TTAGGGCAGTAGATG--GAGCAATAGCACTGAGTGAGATCTC----GGCCACAGCAACTGGGGAGGTGGCTGGCAGTGGATATGGGGTCC---------CCTGCTCCAGGTGCTCAGGCCAGGCATCCCCTCACCCTATT--G-------------------------------------------------------------------AGAGTCCTGGAATTCCAAAGAAGTAAAGCAT--CTA-AGGGTGTTGGGCCAGGGGCAGATGTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     133593 222 -    486031 ACAGGAAACCAGCAGGAGGTGGGAGAAGAGCCCAA-TTAGGGCAGTAGATG--GAGCAATAGCACTGAGTGAGATGTC----GGCCACAGCAACTGGGGAGGTGGCTGGCAGTGGATATGGGGTCC---------CCTGCTCCAGGTGCTCAGGCCAGGCATCCCCTCCCCCCAAT--G-------------------------------------------------------------------AGAGTCCTGGAATTCCAAAGAAGTAAAGCAT--CTA-AGGGTGTGGGGCCAGGGGCTGATGTCA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     383059 236 -   1411461 ACAGGAAACCAGCAGGAGGCGGGGAAAGAGTCCAG-TTAGGGCAGCACTCGTGGAGCAACAGCACTGAGTGAGGTCTCAG--GGCCACGGCGAC-GGGGAGGCGGCTGGCAGTGGATGTGGGGTCCCTTCTCTCGCCTGCTCCAGGTGCTCAGGCCAGACACCCCTTCCCCCCAGTCAG-------------------------------------------------------------------AGAGTTCTGGAATTCCAGAGAAGTGAAGCAT--CTG-CGGGTGCGGGGCCGGAGACAGGTGTTG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           373864 218 +  18854210 ACAGGAAATCAGC---AGGTGGGAAAAGAGTCCAA-TTA--------------GAGCAACAGCACTGAGTGAGGTCTCTG--GGTCACAGCAAT-GGGGAGATGACCGTCAGTGGATATGGGGTCCCTCCTCCCACCTGTTCCAGGTGCTCAGGCCAGGGACCCCTTTCTCCTAGTCAG-------------------------------------------------------------------AGAGATCTGGAATTCCAGATAAGTGAAGCAT--CTG-TGAATGTGAGGCTGG-GGCAGTTGTTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58128911 274 -  94987271 --------TCAG-AGGAAATGAGA----AGCTGAG-TAAGATATATGGATA--GGGTGACAGTGTTGA--GAGACTTT----GGCCGTGGCAGT-GGGGAGATGGGTGGCAATGGATGTGATGTCC-CTCTCTCTCCTCCTCCTAGTGCTCTGGCCAGGAACC---TTCCTCCATT--ATAGTTTTGGGATCCCAGAGAAGGGAAGTTTCCATGGGTGTGGGATCCAGGTAATCTTTCTTCATCTCAGAGTCCTGGACTCTCAGAGAAGTAAAGTTT--CTGTAGGGT-----GACCCAGGCGGGTTCTG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26387573 198 +  26524999 --AGGGGAGCCCCAGGAGCTGGGGGAGAGCCCGAC-TTAGCTGTGCAGGTG--GAG---TAGCACTGGGTAAG-CCTTACGGGGCCGCAGCCAC-TGGGGG-----------CGGATA------CA---------CCTGCTCTGGGGGCACA-GCCAGATGTCCTCTCCCCGTCAT--G-------------------------------------------------------------------A---TCCTGGAGCCCCCCAGAGGGGAAGCGTCACTGCTGGGTGTGGG--CCGGGGCAGGTGCA-
i canFam3.chr35            C 0 C 0
e micMur3.chr6               426659 386 + 123392446 I

a score=10107408.000000
s hg38.chr6_GL000254v2_alt  1529900 565 +   4827813 GGGCTCAGGGTCTTAGCAGGAGGCGTGTTCCTGGCCACTTGAGCCACAGGAAGGGGACCAGGCGCCGGGTGAAGGTGGCAGTGAAGGTGTAGATGAGTTCCTGTGACTCTGCGTTGGTGAAAGTCACGGTGCCCCCTTCATAATCCAGGGCGATGCCCACTCTCCGGGGCCGCAGTGCTGGGAAAAGCTCAGCCTCGGGGCTGGTGTTGGCCCAGATGCCGGAGGAGGAGAGGCGCAGCGCCCACACGCCATCCTCTGGCCGCAGGGAGAGGTCTCCCTTCCTCTTCACAGAGTCTCTAGCCACCCCCACCATGCAGCTTTCCAGAACTtcctcctcttcctcc---tcctcttcttcctcttcatcgcccaacgattcctcatcttcgtccgtttcccagtcgtcatatccatccccatagccgg---cctcctcttcctcctcctcctcttctccctcttcctcctcatccccctcttcttcatcctcagaccagccctccctctccacttccacttccCAGTAGACCTTGCCCCAGGTGAAGCCCTTGCTGCCCAGCACCCCAGGCTC
s panTro5.chr6             30400078 565 + 175400573 GGGCTCAGGGTCTTAGCAGGAGGCGTGTTCCTGGCCACTTGAGCCACAGGAAGGGGACCAGGCGCCGGGTGAAGGTGGCAGTGAAGGTGTAGATGAGTTCCTGTGACTCTGCATTGGTGAAAGTCACGGTGCCCCCTTCATAATCCAGGGCGATGCCCACTCTCCGGGGCCGCAGTGCTGGGAAAAGCTCAGCCTCGGGGCTGGTGTTGGCCCAGATGCCGGAGGAGGAGAGGCGCAGCGCCCACACGCCATCCTCTGGCCGCAGGGAGAGGTCTCCCTTCCTCTTCATAGAGTCTCTAGCCACCCCCACCATGCAGCTTTCCAGAACTtcctcctcttcctcc---tcctcttcttcctcttcatcgcccaacgattcctcatcttcatccgtttcccagtcgtcgtatccatccccatagccgg---cctcctcttcctcctcctcctcttctccctcttcctcctcatctccctcttcttcatcctcagaccagccctccctctccacttccacttccCAGTAGACCTTGCCCCAGGTGAAGCCCTTGCTGCCCAGCACCCCAGGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30634372 565 + 173848474 GGGCTCAGGGTCTTAGCAGGAGGCGTGTTCCTGGCCACTTGAGCCACAGGAAGGGGACCAGGCGCCGGGTGAAGGTGGCAGTGAAGGTGTAGATGAGTTCCTGTGACTCTGCATTGGTGAAAGTCACGGTGCCCCCTTCATAATCCAGGGCGATGCCCACTCTCCGGGGCCGCAGTGCTGGGAAAAGCTCAGCCTCGGGGCTGGTGTTGGCCCAGACGCCGGAGGAGGAGAGGCGCAGCGCCCACACGCCATCCTCTGGCCGCAGGGAGAGGTCTCCCTTCCTCTTCATAGAGTCTCTAGCCACCCCCACCATGCAGCTTTCCAGAACTtcctcctcttcctcc---tcctcttcttcctcttcatcgcccaacgattcctcatcttcatccgtttcccagtcgtcgtatccatccccatagccgg---cctcctcttcctcctcctcctcttctccctcttcctcctcatctccctcttcttcatcctcagaccagccctccctctccacttccacttccCAGTAGACCTTGCCCCAGGTGAAGCCCTTGCTGCCCAGCACCCCAGGCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     342124 565 +   2037526 GGGCTCAGGGTCTTAGCAGGAGGCGTGTTCCTGGCCACTTGAGCCACAGGAAGGGGACCAGGCGCCGCGTGAAGGTGGCAGTGAAGGTGTAGATGAGTTCCTGTGACTCTGCGTTGGTGAAAGTCACGGTGCCCCCTTCATAATCCAGGGCGATGCCCACTCTCCGGGGCCGCAGTGCTGGGAAAAGCTCAGCCTCGGGGCTGGTGTTGGCCCAGATGCCGGAGGAGGAGAGGCGCAGCGCCCACACGCCATCCTCTGGCCGCAGGGAGAGGTCTCCCTTCCTCTTCATAGAGTCTCTAGCCACCCCCACCATGCAGCTTTCCAGAACTtcctcctcttcctcc---tcctcttcttcctcttcatcacccaacgattcctcatcttcatccgtttcccagtcgtcgtatccatccccatagccgg---cctcctcttcctcctcctcctcttctccctcttcctcctcatccccctcttcttcatcctcagaccagccctccctctccacttccacttccCAGTAGACCTTGCCCCAGGTGAAGCCCTTGCTGCCCAGCACCCCAGGCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75005415 565 + 122973662 GGGCTCAGGGTCTCAGCAGGAGGCGCGTTCCTGGCCACTTGAGCCACAGGAAGGGGACCAGGCGCCGGGTGAAGGTGGCAGTGAAGGTGTAGATGAGTTCCTGTGACTCTGCATTGGTGAAAGTCACGGTGCCCCCTTCATAATCCAGAGCGATGCCCACTCTCCGGGGCCGCAGTGCTGGGAAAAGCTCGGCCTCGGGGCTGGTGTTGGCCCAGATGCCGGAAGAGGAGAGGCGCAACGCCCACACGCCATCCTCTGGCCGCAGGGAGAGGTCTCCCTTCCTCTTCATAGAGTCTCTGGCCACCCCCACCATGCAGCTTTCCAGAActtcctcctcttcctcc---tcctcttcttcctcttcatcgcccaatgattcctcatcttcgtccgtttcccagtcgtcgtatccatccccataacccg---cctcctcttcctcctcctcctcttctccctcttcctcctcatccccctcttcttcatcctcagaccagccctccctctccacttccacttccCAGTAGACCTTGCCCCAGGTGAAACCCTTGCTGCCCAGCACCCCAGGCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30895644 565 + 172585720 gggttcagggTCTCAGCAGGAGGCGCGTTCCTGGCCACTTGAGCCACAGGAAGGGGACCAGGCGCCGGGTGAAGGTGGCAGTGAAGGTGTAGATGAGTTCCTGTGACTCTGCGTTGGTGAAAGTCACAGTGCCCCCTTCATAATCCAGGGCGATGCCCACTCTCCGGGGCCGCAGTGCTGGGAAAAGCTCGGCCTCGGGGCTGGTGTTGGCCCAGATGCCGGAAGAGGAGAGGCGCAGTGCCCACACGCCATCCTCTGGCCGCAGGGAGAGGTCTCCCTTCCTCTTCATAGAGTCTCTGGCCACCCCTACCATGCAGCTTTCCAGAACTtcctcctcttcctcc---tcctcttcttcctcttcatcgcccaacgattcctcatcttcgtctgtttcccagtcatcgtatccatccccatagccgg---cctcctcttcctcttcctcctcttctccttcttcctcctcatccccatcttcttcatcctcagaccagccctccctctccacttccacttccCAGTAGACCTTGCCCCAGGTGAAGCCCTTGCTGCCCAGCACCCCAGGCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30185218 565 - 170955103 gggttcagggTCTCAGCAGGAGGCGCGTTCCTGGCCACTTGAGCCACAGGAAGGGGACCAGGCGCCGGGTGAAGGTGGCAGTGAAGGTGTAGATGAGTTCCTGTGACTCTGCGTTGGTGAAAGTCACAGTGCCCCCTTCATAATCCAGGGCGATGCCCACTCTCCGGGGCCGCAGTGCTGGGAAAAGCTCGGCCTCGGGGCTGGTGTTGGCCCAGATGCCGGAAGAGGAGAGGCGCAGTGCCCACACGCCATCCTCTGGCCGCAGGGAGAGGTCTCCCTTCCTCTTCATAGAGTCTCTGGCCACCCCCACCATGCAGCTTTCCAGAActtcctcctcttcctcc---tcctcttcttcctcttcatcgcccaacgattcctcatcttcgtctgtttcccagtcatcgtatccatccccatagccgg---cctcctcttcctcttcctcctcttctccttcttcctcctcatccccatcttcttcatcctcagaccagccctccctctccacttccacttccCAGTAGACCTTGCCCCAGGTGAAGCCCTTGCTGCCCAGCACCCCAGGCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     434073 565 +   1495729 GGGTTCAGGGTCTCAGCAGGAGGCGCGTTCCTGGCCACTTGAGCCACAGGAAGGGGACCAGGCGCCGGGTGAAGGTGGCAGTGAAGGTGTAGATGAGTTCCTGTGACTCTGCGTTGGTGAAAGTCACAGTGCCCCCTTCATAATCCAGGGCGATGCCCACTCTCCGGGGCCGCAGTGCTGGGAAAAGCTCGGCCTCGGGGCTGGTGTTGGCCCAGATGCCGGAAGAGGAGAGGCGCAGTGCCCACACGCCATCCTCTGGCCGCAGGGAGAGGTCTCCCTTCCTCTTCAGAGAGTCTCTGGCCACCCCCACCATGCAGCTTTCCAGAACTtcctcctcttcctcc---tcctcttcttcctcttcatcgcccaacgattcctcatcttcgtctgtttcccagtcatcgtatccatccccatagccgg---cctcctcttcctcttcctcctcttctccttcttcctcctcatccccatcttcttcatcctcagaccagccctccctctccacttccacttccCAGTAGACCTTGCCCCAGGTGAAGCCCTTGCTGCCCAGCACCCCAGGCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     537716 565 -    863181 gggttcagggTCTCAGCAGGAGGCGCGTTCCTGGCCACTTGAGCCACAGGAAGGGGACCAGGCGCCGGGTGAAGGTGGCAGTGAAGGTGTAGATGAGTTCCTGTGACTCTGCGTTGGTGAAAGTCACAGTGCCCCCTTCATAATCCAGGGCAATGCCCACTCTCCGGGGCCGCAGTGCTGGGAAAAGCTCGGCCTCGGGGCTGGTGTTGGCCCAGATGCCAGAAGAGGAGAGGCGCAGTGCCCACACGCCATCCTCTGGCCGCAGGGAGAGGTCTCCCTTCCTCTTCATAGAGTCTCTGGCCACCCCCACCATGCAGCTTTCCAGAActtcctcctcttcctcc---tcctcttcttcctcttcatcgcccaacgattcctcatcttcgtctgtttcccagtcatcatatccatccccatagccgg---cctcctcttcctcttcctcctcttctccttcttcctcctcatccccatcttcttcatcctcagaccagccctccctctccacttccacttccCAGTAGACCTTGCCCCAGGTGAAGCCCTTGCTGCCCAGCACCCCAGGCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29684483 565 -  71996105 gggttcagggtcTCAGCAGGAGGCGCGTTCCTGGCCACTTGAGCCACAGGAAGGGGACCAGGCGCCGGGTGAAGGTGGCAGTGAAGGTGTAGATGAGTTCCTGTGACTCTGCGTTGGTGAAAGTCACAGTGCCCCCTTCATAATCCAGGGCGATGCCCACTCTCCGGGGCCGCAGTGCTGGGAAAAGCTCGGCCTCGGGGCTGGTGTTGGCCCAGATGCCGGAAGAGGAGAGGCGCAGTGCCCACACGCCATCCTCTGGCCGCAGGGAGAGGTCTCCCTTCCTCTTCATAGAGTCTCTGGCCACCCCCACCATGCAGCTTTCCAGAActtcctcctcttcctcc---tcctcttcttcctcttcatcacccaacgattcctcatcttcatctgtttcccagtcatcgtatccatccccatagccgg---cctcctcttcctcttcctcctcttctccttcttcctcctcatccccatcttcttcatcctcagaccagccctccctctccacttccacttccCAGTAGACTTTGCCCCAGGTGAAGCCCTTGCTGCCCAGCACCCCAGGCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     419946 565 -    735854 GGGTTCAGGGTCTCAGCAGGAGGCGCGTTCCTGGCCACTTGAGCCACAGGAAGGGGACCAGGCGCCGGGTGAAGGTGGCAGTGAAGGTGTAGATGAGTTCCTGTGACTCTGCGTTGGTGAAAGTCACAGTGCCCCCTTCATAATCCAGGGCGATGCCCACTCTCCGGGGCCGCAGTGCTGGGAAAAGCTCGGCCTCGGGGCTGGTGTTGGCCCAGATGCCGGAAGAGGAGAGGCGCAGTGCCCACACGCCATCCTCTGGCCGCAGGGAGAGGTCTCCCTTCCTCTTCATAGAGTCTCTGGCCACCCCCACCATGCAGCTTTCCAGAActtcctcctcttcctcc---tcctcttcttcctcttcatcgcccaacgattcctcatcttcgtctgtttcccagtcatcgtatccatccccatagccgg---cctcctcttcctcttcctcctcttctccttcttcctcctcatccccatcttcttcatcctcagaccagccctccctctccacttccacttccCAGTAGACCTTGCCCCAGGTGAAGCCCTTGCTGCCCAGCACCCCAGGCTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     326492 565 -   1829203 GGGTTCAGGGTCTCAGCAGGAGGCGCGTTCCTGGCCACTTGAGCCACAGGAAGGGGACCAGGCGCCGGGTGAAGGTGGCAGTGAAGGTGTAGATGAGTTCCTGTGACTCTGCGTTGGTGAAAGTCACAGTGCCCCCTTCATAATCCAGGGCGATGCCCACTCTCCGGGGCCGCAGTGCTGGGAAAAGCTCAGCCTCAGGGCTGGTGTTGGCCCAGATGCCGGAAGAAGAGAGGCGCAGTGCCCACACGCCATCCTCTGGCCGCAGGGAGAGGTCTCCCTTCCTCTTCATAGAGTCTCTGGCCACCCCCACCATGCAGCTTTCCAGAActtcctcctcttcctcc---tcctcttcttcctcttcatcgcccaacgattcctcatcttcatctgtttcccagtcgtcgtatccatccccatagccag---cctcctcttcttcttcctcctcttctccttcttcctcctcatccccctcttcttcatcctcAGACCAGCCCTCCCTCTCCACTTCTACTTCCCAGTAGACCTTGCCCCAGGTGAAGCCCTTGCTGCCCAGCACCCCAGGCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30515586 565 + 171630274 GGGTTCAGGGTCTCAGTAGTAGACGCGTTCCTGGCCACTTGAGCCACAGGAAGGGAACCAGGCGCCGGGTGAAGGTGGCGGTGAAGGTGTAGATGAGTTCTTGTGACTCTGCATTGGTGAAAGTCACGGTGCCCCCTTCATAATCCAGGGCAATGCCCACTCTCCGGGGCCGTAGCGCCGGGAAAAGCTCAGCCTCAGGGCTGGTGTTGGCCCAGATGCCGGAGGAGGAGAGGCGCAGCGCCCACACACCATCCTCTGGCCGCAGGGAGAGGTCTCCCTTCCTCTTCATAGAGTCTCTGGCCACCCCCACCATGCAGCTTTCAAGAActtcttcctcttcatcc---tcctcttcttcctcttcATCACCCAATGATTCCTCATCCTCATCCGTTTCCCAGTCATCATATCCATCCCCATAGCCGG---cctcttcttcctcctcctcctcttctccctcttcctcctcttccccctcttcttcatcctcAGACCAGCCCTCTCTCTCCACTTCCACTTCCCAGTAGACCTTGCCCCAGGTGAAGCCCTTGCTGCCCAGCACCCCGGGCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           319173 565 +    515838 GGGTTCAGGGTCTCAGTAGGAGACGTGTTCCTGGCCACTTGAGCCACAGGAAGGGAACCAGGCGCCGGGTGAAGGTGGCGGTGAAGGTGTAGATGAGTTCCTGTGACTCTGCATTGGTGAAAGTCACGGTGCCCCCATCATAATCCAGGGCAATGCCCACTCTCCGGGGCCGTAGCGCTGGGAAGAGCTCAGCCTCGGGGCTGGTGTTGGCCCAGATGCCAGAGGAGGAGAGGCGCAGTGCCCACACACCATCCTCTGGCCGCAGGGAGAGGTCTCCCTTCCTTTTCATAGAGTCTCTGGCCACCCCCACCATGCAGCTTTCCAGAActtcctcctcttcatcc---tcctcttcttcctcttcatcacccaatgattcctcatcctcgtccgtttccCAGTCGTCATATCCATCCCCATAGCCGG---cctcctcttcctcctcctcctcttctccctcttcctcctcttccccatcttcttcatcctcAGACCAGCCCTCCCTCTCCACTTCCACTTCCCAGTAGACCTTGCCCCAGGTGAAGCCCTTGCTGCCCAGCACCCCAGGCTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     949957 565 -   1771730 AGGTTCAGGGTCTCAGTAGGAGACGCGTTCCTGGCCACTTGAGCCACAGGAAGGGAACCAGGCGCCGGGTGAAGGTGGCGGTGAAGGTGTAGATGAGTTCCTGTGACTCTGCATTGGTGAAAGTCACGGTGCCCCCTTCATAATCCAGGGCAATGCCCACTCTCCGGGGCCGTAGCGCTGGGAAGAGCTCGGCCTCGGGGCTGGTGTTGGCCCAGATGCCGGAGGAGGAGAGGCGCAGTGCCCACACACCATCCTCTGGCCGTAGGGAGAGGTCTCCCTTCCTCTTCATAGAGTCTCTGGCCACCCCCACCATGCAGCTTTCCAGAActtcctcctcttcatcc---tcctcttcttcctcttcatcacccaatgattcctcatcctcatccgtttcccagtcgtcatatccatccccatagccag---cctcctcttcctcctcctcctcttctccctcttcctcctcttccccctcttcttcatcctcagaccagccctccctctccacttccacttccCAGTAGACCTTGCCCCAGGTGAAGCCCTTGCTGCCCAGCACCCCGGGCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     133815 565 -    486031 GGGTTCAGGGTCTCAGTAGGAGACGCGTTCCTGGCCACTTGAGCCACAGGAAGGGAACCAGGCGCCGGGTGAAGGTGGCGGTGAAGGTGTAGATGAGTTCCTGTGACTCTGCATTGGTGAAAGTCACGGTGCCCCCTTCATAATCCAGGGCAATGCCCACTCTCCGGGGCCGTAGCGCCGGGAAAAGCTCGGCCTCGGGGCTGGTGTTGGCCCAGATGCCGGAGGAGGAGAGGCGCAGTGCCCACACACCATCCTCTGGCCGCAGGGAGAGGTCTCCCTTCCTCTTCATAGAGTCTCTGGCCACCCCCACCATGCAGCTTTCCAGAActtcctcctcttcatcc---tcctcttcttcctcttcatcacccaatgattcctcatcctcgtccgtttcccagtcgtcatatccatccccatagccgg---cctcctcttcctcctcctcctcttctccctcttcctcctcttccccctcttcttcatcctcagaccagccctccctctctacttccacttccCAGTAGACCTTGCCCCAGGTGAAGCCCTTGCTGCCCAGCACCCCGGGCTC
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               427045 545 + 123392446 GGGCTCAGGGGCTCAGCACGAGGCGCGTTCCTGGCCACCTAAGCCACAGGAAGGGGACCAGGCG-CGGGGGAAGGTGGCAGTGAAGGTGTAGATGAGCTCCTGCGACTCTGCCTTGGTGAAAGTCACGGTGCCCCCTTCGTAATCCAGAGCGACGCCCACTCTCC--GGCCGCAGCGC-CAGAAGAGCTCAGCCT-GGGGCTGGTGTTGGCCTGGATGCCCGAGGAGGACAGGCGCAGCGTCCACA--CCGCCCTCCG--CCCAGGGAGAGG--CCCCTTCCTCTTCAC--AGCCCCTGGCCAC-CCCACCATGCAGCTTTCCAGAAcctcctcctc----tcc---tcttcctcttcctccttctcacccaaggactcctcgtcctcgtccgtttcccagttgtcatatcaatccccgtagccgg---cctcctcttcctcctccgcctcctcctcctctgtctcctc-cccgcctcctctccgtcctcAGACCAGCCCTCGCGCTGCACCTCCACTTCCCAGCAGACCTTGTCCCAGGTG-AGCCCTTGCTGCCCAGCACGCCCGGCTC
i micMur3.chr6             I 386 I 72
s proCoq1.NW_012149775v1     383295 565 -   1411461 GGGCTCAGGGTCTCAGCAGGAGGCGCGTTCCAGGCCACTTGAGCCACAGGAAGGGGACCAGGCGCCGGGTGAAGGTGGCGGTGAAGGTGTAGATGAGTTCCTGCGACTCTGCGTTGGTGAAAGTCACGGTGCCCCCTTCATAATCCAGGGCGATGCCCACTCTCCGGGGCTGCAGCGCGGGGAAGAGCTCGGCCTCGGGGCTGGTGTTGGCCCAGATGCCCGCGGAGGACAGGCGCAGCGCCCACACCCCGTCCTCTGGCCGCAGGGAGAGGTCCCCCTTCCTCTTCACAGAGTCCCTGGCCACACCCACCATGCAGCTTTCCAGAACTtcctcctcttcttct---tcttcttcttcctcctcatcacccaaggactcctcgtcctcgtctgtttcccagtcgtcatatccatccccatagccgg---cctcctcttcctcctcctcctcttccccctcttcctcctcatccccctcctcttcgtcctcagaccagccctcccgctccacctccacttccCAGTAGACCTTGCCCCAGGTGAAGCCCTTGCTGCCCAGCACGCCCGGCTC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           374082 565 +  18854210 GAGCTTAAGGTCTCAGCAGGAGGCGCGTTCCTGGCCACTTGAGCCACAGGAAGGGGACCAGGCGACGGGTGAAGGTGGCAGTGAAAGTATAGATGAGTTCCTGTGACTCTGCATTGGTGAAAGTTACAGTCCCCCCTTCATAATCCAGGGCAATGCCCACTCTCCGGGGCCGCAGTGCAGGGAAGAGCTCAGCCTCAGGGTTGGTGTTGGCCCAGATACCAGAGGAGGAGAGGCGCAGAGCCCACACCCCATCCTCCGGCCGCAGGGAGAGGTCTCCCTTTCTCTTCACAGAGTCTCTGGCCACCCCCACCATGCAGCTTTCCAGAATGtcatcctcttcctct---tcttcttcctcctcttcatcacccaatgactcctcatcctcgtcTGTTTCCCAGTCATCGTATCCATCCCCATAGCCAG---cctcctcttcctcctcctcctcttccccttcttcctcctcatccccctcctcttcATCTTCAGACCAGCCCTCCCTCTCCACCTCCACTTCCCAGTAGACTTTGCCCCAGGTGAAGCCCTTGCTGCCCAGCACACCTGGCTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58129185 565 -  94987271 GAGTTCAGGGTCTCAGCAGAAGGCGTGCTCCTGGCCACTTGAGCCACAGGAAGGGAACCAGGCGCCGGGTGAAGGTGGTCGTGAAGGTATAGATGAGTTCCTGGGACTCTGCATTGGTGAATGTCACAGTGCCACCTTCATAATCCAGGGCGATGCCCACTCTCCGGGGCCGCAGCACCGGGAACAGCTGGGCCTCTGGGCTCGTGTTGGCCCAGATACCTGAGGGGGAGAGCCGAAGGGCCCACACACCATCTTCTGGTCGCAGGGAGAGGTCCCCTTTCCTCTTCACAGAGTCTTTGGCCACTCCCACCATGCAGCTTTCCTGAActtcttcttcttcttcc---tcttcctcctcttcctcttcccccagtgattcgtcttcttcatctgtttcccagtcttcgtatccgtccccatagccaa---cctcctcgtcttcttcctcttcttccccttcttcttcctcctccccctcttcttcatcctctGACCAGCCTTCTCTCTCCAACTCTACTTCCCAGTATACCTTTCCCCATGTGAAGCCCTTGCTGCCCAACACTCCTGGCTC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26387771 571 +  26524999 GGGCTCAGGGTCGCAGTAGGAGGCGTGTCCCTGGCCACTTGAGCCACAGGAAAGGAACCAGACGCCGAGTGAAGGTTGCCGTGAAGGTGTAGATAAGTTCTTGTGACTCCGCATTGGTGAACGTCACAGTGCCCCCTTCGTAATCCAGGGCGATGCCCACCCGCCGGGGCCGTAGTGCGGGGAAGAGTTCAGCCTCGGGTTCCGTGTTGGCCCAGATGCCCGCGGAGGACAGGCGCAGCGCCCACACCCCATCTTCCGGCCGCAGGGAGACATCCCCCTTCCTCTTCACAGAGTCTCTGGCCACCCCCACCATGCAGCTCTCAAGAAcctcctcctcctcctcctcttcctcctcctcctcctcatcccccagcgattcctcatcctcgtctgtctcccagtcgtcatagccatccccgtacccggcttcctcctcctcctcctcctcctcctctccctcttcctcctcatcgccctcctcttcctcctccGACCAGCCCTCCCTGTCCACCTCCACCTCCCAGTACACCTTGCCCCAGGTGAAGCCCTTACTGCCCAGCACACCTGGCTC
i canFam3.chr35            C 0 C 0

a score=1256131.000000
s hg38.chr6_GL000254v2_alt  1530465 75 +   4827813 ACAGTCAAACTGCTGGGGGTGCAGGTAGGCACTCTTGTACAGGCTGGTGTAGGTCACGCACTTCCAGTCCTCTGA
s panTro5.chr6             30400643 75 + 175400573 ACAGTCAAACTGCTGGGGGTGCAGGTAGGCACTCTTGTACAGGCTGGTGTAGGTCACGCACTTCCAGTCCTCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30634937 75 + 173848474 ACAGTCAAACTGCTGGGGGTGCAGGTAGGCACTCTTGTACAGGCTGGTGTAGGTCACGCACTTCCAGTCCTCTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     342689 75 +   2037526 ACAGTCAAACTGCTGGGGGTGCAGGTAGGCACTCTTGTACAGGCTGGTGTAGGTCACGCACTTCCAGTCCTCTGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75005980 75 + 122973662 ACAGTCAAACTGCTGGGGGTGCAGGTAGGCACTCTTGTACAGGCTGGTGTAGGTCACGCACTTCCAGTCCTCCGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30896209 75 + 172585720 ACAGTCAAACTGCTGGGGGTGCAGGTAGGCACTCTTGTACAAGCTGGTGTAGGTCACGCACTTCCAGTCCTCTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30185783 75 - 170955103 ACAGTCAAACTGCTGGGGGTGCAGGTAGGCACTCTTGTACAAGCTAGTGTAGGTCACGCACTTCCAGTCCTCTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     434638 75 +   1495729 ACAGTCAAACTGCTGGGGGTGCAGGTAGGCACTCTTGTACAAGCTAGTGTAGGTCACGCACTTCCAGTCCTCTGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     538281 75 -    863181 ACAGTCAAACTGCTGGGGGTGCAGGTAGGCGCTCTTGTACAAGCTGGTGTAGGTCACGCACTTCCAGTCCTCTGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29685048 75 -  71996105 ACAGTCAAACTGCTGGGGGTGCAGGTAGGCACTCTTGTACAAGCTAGTGTAGGTCACGCACTTCCAGTCCTCTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     420511 75 -    735854 ACAGTCAAACTGCTGGGGGTGCAGGTAGGCACTCTTGTACAAGCTGGTGTAGGTCACGCACTTCCAGTCCTCTGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     327057 75 -   1829203 ACAGTCAAACTGCTGGGGGTGCAGGTAGGCACTCTTGTACAAGCTGGTGTAGGTCACGCACTTCCAGTCCTCTGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30516151 75 + 171630274 ACAGTCAAACTGCTGGGGGTGCAGGTAGGCACACTTGTATAGGCTGGTGTAGGTCACGCACTTCCAGTCCTCTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           319738 75 +    515838 ACAGTCAAACTGCTGGGGGTGCAGGTAGGCACACTTGTACAGGCTGGTGTAGGTCACGCACTTCCAGTCCTCTGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     950522 75 -   1771730 ACAGTCAAACTGCTGGGGGTGCAGGTAGGCACATTTGTACAGGCTGGTGTAGGTCACGCACTTCCAGTCCTCTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     134380 75 -    486031 ACAGTCAAACTGCTGGGGGTGCAGGTAGGCACACTTGTACAAGCTGGTGTAGGTCACGCACTTCCAGTCCTCTGA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     383860 75 -   1411461 GCAGTCAAACTGCTGGGGGTGCAGGTAGGCGCTCTTGTACAGGCTGCTGTAGGTCACGCACTTCCAGTCCTCCGA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           374647 75 +  18854210 ACAGTCAAATTGCTGGGGGTGCAGGTAGGCACTCTTGTACAGGCTGGTGTAGGTCACACACTTCCAGTCCTCTGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58129750 75 -  94987271 ACAGTCAAACTGCTGGGGGAGCAGACAGTCACTCTGGTATTGGCCAGTATAGGTCACACACTTCCAGTCCTCTGA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26388342 75 +  26524999 GCAGTCAAATTGCTGGGGGTACAGATAGGCACTCTGGTACAGGCTGCTGTAGGTCACACACTTCCAGTCCTCGGA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               427590 72 + 123392446 I

a score=1079413.000000
s hg38.chr6_GL000254v2_alt  1530540 58 +   4827813 CAGCTGCAGGTACCCACTGGCCGACTGTGGGTCCAGGGTGACGCTCACTGTGGGGACA
s panTro5.chr6             30400718 58 + 175400573 CAGCTGCAGGTACCCACTGGCCGACTGTGGGTCCAGGGTGACGCTCACTGTGGGGACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30635012 58 + 173848474 CAGCTGCAGGTACCCACTGGCCGACTGTGGGTCCAGGGTGACGCTCACTGTGGGGACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     342764 58 +   2037526 CAGCTGCAGGTACCCACTGGCCGACTGTGGGTCCAGGGTGACGCTCACTGTGGGGACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75006055 58 + 122973662 CAGCTGCAGGTACCCACTGGCCGACTGTGGGTCCAGGGTGACGCTCACTGTGGGGACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30896284 58 + 172585720 CAGCTGCAGGTACCCACTGGCCGACTGTGGGTCCAGGGTGACACTCACTGTGGGGACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30185858 58 - 170955103 CAGCTGCAGGTACCCACTGGCCGACTGTGGGTCCAGGGTGACACTCACTGTGGGGACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     434713 58 +   1495729 CAGCTGCAGGTACCCACTGGCCGACTGTGGGTCCAGGGTGACACTCACTGTGGGGACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     538356 58 -    863181 CAGCTGCAGGTACCCACTGGCCGACTGTGGGTCCAGGGTGACACTCACTGTGGGGACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29685123 58 -  71996105 CAGCTGCAGGTACCCACTGGCCGACTGTGGGTCCAGGGTGACACTCACTGTGGGGACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     420586 58 -    735854 CAGCTGCAGGTACCCACTGGCCGACTGTGGGTCCAGGGTGACACTCACTGTGGGGACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     327132 58 -   1829203 CAGCTGCAGGTACCCACTGGCCGACTGTGGGTCCAGGGTGACACTCACTGTGGGGACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30516226 58 + 171630274 CAGCTGCAGGTACCCACTGGCCGACTGTGGGTCCAGGGTGACGCTCACTGTGGGGACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           319813 58 +    515838 CAGCTGCAGGTACCCACTGGCCGACTGTGGGTCCAGGGTGACACTCACTGTGGGGACA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     950597 58 -   1771730 CAGCTGCAGATACCCACTGGCCGACTGTGGGTCCAGGGTGACGCTCACTGTGGGGACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     134455 58 -    486031 CAGCTGCAGGTACCCACTGGCCGACTGTGGGTCCAGGGTGACGCTCACTGTGGGGACA
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               427662 57 + 123392446 CAGCTGCAGGTGCCCGCTGACCGACCTCGGGTCCAGGGTGACGCTCACTGC-GGGACA
i micMur3.chr6             I 72 C 0
s proCoq1.NW_012149775v1     383935 58 -   1411461 CAGCTGCAGGTACCCACTGGCCGACTGCGGGTCCAGGGTGACACTCACTGCGGGGACA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           374722 58 +  18854210 CAGCTGCAGGTACCCACTGGCCGACTGTGGGTCCAGGGTGACACTCACTGTGGGGACA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58129825 57 -  94987271 AAGATGTAGGTATCCACTGGCCGACTGTGGGTCCAGGGTGACGCTTACTAT-TGGACA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26388417 58 +  26524999 CAGCTGCAGATACCCGCTGGCTGACTGCGGGTCCAGGGTCACACTCACTGTGGAGACA
i canFam3.chr35            C 0 I 56

a score=-32682.000000
s hg38.chr6_GL000254v2_alt  1530598 8 +   4827813 A-GG-----GA-AAA
s panTro5.chr6             30400776 9 + 175400573 ACGG-----GG-AAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30635070 7 + 173848474 ACGG-----GG---A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     342822 6 +   2037526 A-GG-----GG---A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75006113 8 + 122973662 A-GG-----GA-AAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30896342 7 + 172585720 A-GG-----GG--AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30185916 7 - 170955103 A-GG-----GG--AA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     434771 7 +   1495729 A-GG-----GG--AA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     538414 7 -    863181 A-GG-----GG--AA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29685181 7 -  71996105 A-GG-----GG--GA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     420644 5 -    735854 A-GG-----GG----
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     327190 9 -   1829203 A-GG-----GGAAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30516284 5 + 171630274 A-GG-----GG----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           319871 5 +    515838 A-GG-----GG----
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     950655 5 -   1771730 A-GG-----AA----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     134513 5 -    486031 A-GG-----GG----
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               427719 8 + 123392446 A-GGGAAAA------
i micMur3.chr6             C 0 I 23
s proCoq1.NW_012149775v1     383993 3 -   1411461 A-GG-----------
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           374780 3 +  18854210 A-GG-----------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58129882 8 -  94987271 A-GG-----GA-GGA
i mm10.chr17               C 0 C 0
e canFam3.chr35            26388475 56 +  26524999 I

a score=60624.000000
s hg38.chr6_GL000254v2_alt  1530606 5 +   4827813 AAAAA
s panTro5.chr6             30400785 5 + 175400573 AAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30635077 5 + 173848474 AAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     342828 5 +   2037526 AAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75006121 5 + 122973662 AAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30896349 5 + 172585720 AAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30185923 5 - 170955103 AAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     434778 5 +   1495729 AAAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     538421 5 -    863181 AAAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29685188 5 -  71996105 AAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     420649 3 -    735854 --AAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     327199 5 -   1829203 AAAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30516289 5 + 171630274 AAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           319876 5 +    515838 AAAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     950660 5 -   1771730 AAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     134518 5 -    486031 AAAAA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     383996 4 -   1411461 -AAAA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           374783 4 +  18854210 -AAAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58129890 5 -  94987271 AGTAA
i mm10.chr17               C 0 I 141
e micMur3.chr6               427727 23 + 123392446 I
e canFam3.chr35            26388475 56 +  26524999 I

a score=328299.000000
s hg38.chr6_GL000254v2_alt  1530611 42 +   4827813 AAAAAACAGCATCACTGTTT-----TGTTTTGTTTTTTAAGTCAGAG
s panTro5.chr6             30400790 42 + 175400573 AAAAAACAGCATCACTGTTT-----TGTTTTGTTTTTTAAGTCAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30635082 42 + 173848474 AAAAAACAGCATCACTGTTT-----TGTTTTGTTTTTTAAGTCAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     342833 42 +   2037526 AAAAAACAGCATCACTGTTT-----TGTTTTGTTTTTTAAGTCAGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75006126 37 + 122973662 AAAAAACAGCATCAC----------TGTTTTGTTTTTTAAGTTAGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30896354 38 + 172585720 AACAAACAACATCACTGTTT-----CAT----TTTTTTAAGTTAGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30185928 38 - 170955103 AACAAACAACATCACTGTTT-----TGT----TTTTTTAAGTTAGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     434783 38 +   1495729 AACAAACAACATCACTGTTT-----TGT----TTTTTTAAGTTAGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     538426 38 -    863181 AACAAACAACATCACTATTT-----TGT----TTTTTTAAGTTAGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29685193 38 -  71996105 AAAAAACAACATCACTGTTT-----TGT----TTTTTTAAGTTAGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     420652 38 -    735854 AAAAAACAACATCACTGTTT-----TGT----TTTTTTAAGTTAGAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     327204 42 -   1829203 AAAAAACAACATCACTGTTT-----TGTTTTGTTTTTTAAGTTAGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30516294 37 + 171630274 AAGTAACAATATCACTGTTT----------TGCTTTTTAAGTTAGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           319881 47 +    515838 AAGTAACAATATCACTGTTTTACTCTGTTCTGTTTTTTAAGTTAGAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     950665 47 -   1771730 AAGTAACAATATCACTGTTTTGCTCTGTTTTGTTTTTTAAGTTAGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     134523 43 -    486031 AAGTAACAATATCATCGTTT-GCTCTGTTTTG---TTTAAGTTAGAG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     384000 31 -   1411461 AAGTAACAGTGTCACTG----------------TTTTTAAATTATAA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           374787 37 +  18854210 AAGTAACAGCATCGATGTTT-----TT-----CTTTTTAAGTTATAG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               427727 23 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e canFam3.chr35            26388475 56 +  26524999 I

a score=478120.000000
s hg38.chr6_GL000254v2_alt  1530653 51 +   4827813 GGAATAAAATTTATTTTGGCAGATAGCGTTAAACAAAATTAAAGTTGCATA
s panTro5.chr6             30400832 51 + 175400573 GGAATAAAATTTACTTTGGCATATAGTGTTAAACAAAATTAAAGTTGCATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30635124 51 + 173848474 GGAATAAAATTTACTTTGGCATATAGTGTTAAACAAAATTAAAGTTGCATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     342875 51 +   2037526 GGAATAAAATTTATTTTGGCAGATAGTGTTAAACAAAATTAAAGTTGCATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75006163 51 + 122973662 GGAATAAAATTTATTTTGGCAGACAGTGTTAAACAAAATTAAAGTTGCATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30896392 51 + 172585720 AGAATAAAATTTATTTTGGCAGACAGTGTTAAACAAAATTAAAGTTGCATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30185966 51 - 170955103 GGAATAAAATTTATTTTGGCAGACAGTGTTAAACAAAATTAAAGTTGCATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     434821 51 +   1495729 GGAATAAAATTTATTTTGGCAGACAGTGTTAAACAAAATTAAAGTTGCATA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     538464 51 -    863181 GGAATACAATTTATTTTGGCAGACAGTGTTAAACAAAATTAAAGTTGCATA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29685231 51 -  71996105 GGAATAAAATTTATTTTGGCAGACAGTGTTGAACAAAATTAAAGTTGCATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     420690 51 -    735854 GGAATAAAATTTATTTTGGCAGACAGTGTTAAACAAAATTAAAGTTGCATA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     327246 51 -   1829203 GGAATAAAATTTATTTTGGCAGACAGTGTTAAACAAAATTAAAGTTGCATA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30516331 29 + 171630274 GGAATAAAATTTATTTTGGCAGACATT----------------------TA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           319928 29 +    515838 GGAATAAAATTTATTTTGGCAGACATT----------------------TA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     950712 29 -   1771730 GTAATAAAATTTATTTTAGCAGACATT----------------------TA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     134566 29 -    486031 GCAATAAAATTTATTTTGGCAGACATT----------------------CA
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               427750 51 + 123392446 GGAATAACATTTATTGTGATAGATACTGTTAAACAAAATTAAAGTTGCATA
i micMur3.chr6             I 23 I 145
s proCoq1.NW_012149775v1     384031 47 -   1411461 GGAATAACGTTTATTTTGATAG----TGTTAAACAAAATTAAAATTGCATA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           374824 41 +  18854210 AGAATAAAGTTTATTCTGACAA----------ACAAAATTAAAGTAGCATC
i otoGar3.GL873550         C 0 I 4
e mm10.chr17               58129895 141 -  94987271 I
e canFam3.chr35            26388475 56 +  26524999 I

a score=992117.000000
s hg38.chr6_GL000254v2_alt  1530704  99 +   4827813 CATTAGTAATATAACTCAACATCCTTAATTTGGTA-TAAGTGTGACACATTTTCTGGCTT-----TGTATTCTGCTAAATCACCATAACTAAACTGCTTTATAAA
s panTro5.chr6             30400883  99 + 175400573 TATTAGTAATATAACTCAACATCCTTAATTTGGTA-TAAGTGTGACACATTTTCTGGCTT-----TGTATTCTGCTAAATCACCATAACTAAACTGCTTTATAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30635175  99 + 173848474 TATTAGTAATATAACTCAACATCCTTAATTTGGTA-TAAGTGTGACACATTTTCTGGCTT-----TGTATTCTGCTAAATCACCATAACTAAACTGCTTTATAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     342926  99 +   2037526 TATTAGTAATATAACTCAACTTCCTTAATTTGGTA-TAAGTGTGACACATTTTCTGGCTT-----TGTATTCTGCTAGATCACCATAACTAAACTGCTTTATAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75006214  99 + 122973662 TATTAGTAACATAACTCAACATCCTTAATTTGGTA-TAAGTGAGACACATTTTCTGGCTT-----TGTATTCTGCTAAATCACCATAACTAAACTGCTTTATAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30896443  94 + 172585720 TATTAGTAACG-----TAACATCCTTAATTTGGTA-TAAGTGTGACACATTTTCTGGCTT-----TGTATTCTGCTAAATCACCATAACTAAACTGCTTTATAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30186017  94 - 170955103 TATTAGTAACG-----TAACATCCTTAATTTGGTA-TAAGTGTGACACATTTTCTGGCTT-----TGTATTCTGCTAAATCACCATAACTAAACTGCTTTATAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     434872  94 +   1495729 TATTAGGAACG-----TAACATCCTTAATTTGGTA-TAAGTGTGACACATTTTCTGGCTT-----TGTATTCTGCTAAATCACCATAACTAAACTGCTTTATAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     538515  94 -    863181 TATTAGTAACG-----TAACATCCTTAATTTGGTA-TAAGTGTGACACATTTTCTGGCTT-----TGTATTCTGCTAAATCACCATAACTAAACTGCTTTATAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29685282  94 -  71996105 TATTAGTAACG-----TAACATCCTTAATTTGGTA-TAAGTGTGACACATTTTCTGGCTT-----TGTATTCTGCTAAATCACCATAACTAAACTGCTTTATAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     420741  94 -    735854 TATTAGTAACG-----TAACATCCTTAATTTGGTA-TAAGTGTGACACATTTTCTGGCTT-----TGTATTCTGCTAAATCACCATAACTAAACTGCTTTATAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     327297  99 -   1829203 TATTAGTAACATAACTTAACATCCTTCATTTGGTG-TAAGTGTGACACATTTTCTGGCTT-----TGTATTCTGCTAAATCACCATAACTAAACTGCTTTATAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30516360  88 + 171630274 TTTTT-----------CAACATCCTTAATTTGGTA-TAAGTGTGGCATATTTTCTGGCTT-----CGTGTTCTGCTAAATCACCATCACTAAACTGCTTTATAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           319957  78 +    515838 TATTT-----------CAACATCCT-----------TAAGTGTGGCATATTTTCTGGCTT-----TGTGTTCTGCTAAATCACCAACACTAAACTGCTTTATGAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     950741  88 -   1771730 TTTTT-----------CAACATCCTTAATTTGGTA-TAAGTGTGGCATATTTTCTGGCTT-----TGTGTTCTGCTAAATCACCATCACTAAACTGCTTTATGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     134595  88 -    486031 TTTTT-----------CAACATCCTTAATTTGGTG-TAAGTGTGGCATATTTTCTGGCTT-----TGTGTTCTGCTAAATCACCATCACTAAACTGCTTTAAGAG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     384078 103 -   1411461 CATTAGTAACATAACTCGACATCTGGAATTTGGTGTTAAGTGTGACACATTTTCTTGCTTTCC--CAGGTTCTGTTAAATCACCATACCAAGACTGCTTTATAAA
i proCoq1.NW_012149775v1   C 0 I 4
s otoGar3.GL873550           374869 100 +  18854210 AATCAGTAACATA-----ACATCCTTAATTTGGAGTTAAGCAAGACATATTTTCTTGCTCTCCCACATGTTTCATTAAATCACCATATTTAAACTGCCTTATAAA
i otoGar3.GL873550         I 4 C 0
e micMur3.chr6               427801 145 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e canFam3.chr35            26388475  56 +  26524999 I

a score=56304.000000
s hg38.chr6_GL000254v2_alt  1530803 6 +   4827813 CATGAT
s panTro5.chr6             30400982 6 + 175400573 CATGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30635274 6 + 173848474 CATGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     343025 6 +   2037526 CATGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75006313 6 + 122973662 CATGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30896537 6 + 172585720 CATGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30186111 6 - 170955103 CATGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     434966 6 +   1495729 CATGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     538609 6 -    863181 CATGAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29685376 6 -  71996105 CATGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     420835 6 -    735854 CATGAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     327396 6 -   1829203 CATGAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30516448 6 + 171630274 CATTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           320035 6 +    515838 CATGAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     950829 6 -   1771730 CATGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     134683 6 -    486031 CATGAT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           374969 4 +  18854210 ACTG--
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               427801 145 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     384181 4 -   1411461 I
e canFam3.chr35            26388475 56 +  26524999 I

a score=419829.000000
s hg38.chr6_GL000254v2_alt  1530809 34 +   4827813 ATACTGAAATTTAACTTGACTGTTTTCGCTTACG
s panTro5.chr6             30400988 34 + 175400573 ATACTGAAATTTAACTTGACTGTTCTCGCTTACG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30635280 34 + 173848474 ATACTGAAATTTAACTTGACTGTTCTCGCTTACG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     343031 34 +   2037526 ATACTGAAATTTAACTTGACTGTTTTCGCTTACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75006319 34 + 122973662 ATACTGAAATTTAACTTTACTGTTTTCGCTTACG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30896543 34 + 172585720 ATACTGAAATTTAACTTTACTGTTTTCGCTTACG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30186117 34 - 170955103 ATACTGAAATTTAACTTTACTGTTTTCGCTTACG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     434972 34 +   1495729 ATACTGAAATTTAACTTTACTGTTTTCGCTTACG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     538615 34 -    863181 ATACTGAAATTTAACTTTACTGTTTTCGCTTACG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29685382 34 -  71996105 ATACTGAAATTTAACTTTACTGTTTTCGCTTACG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     420841 34 -    735854 ATACTGAAATTTAACTTTACTGTTTTCGCTTACG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     327402 34 -   1829203 ATACTGAAATTTAACTTTACTGTTTTCGCTTATG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30516454 34 + 171630274 ATACTGAAATTTAACTTTACTGTTTTCACTTATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           320041 34 +    515838 ATACTGAAATTTAACTTTACTGTTTTCACTTATG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     950835 34 -   1771730 ATACTGAAATTTAACTTTACTGTTTTCATTTATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     134689 34 -    486031 ATACTGAAATTTAACTTTACTGTTTTCACTTATG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     384185 34 -   1411461 ATGCTGAAATTTAACCTTACTGTTCTCGCTTATG
i proCoq1.NW_012149775v1   I 4 C 0
s otoGar3.GL873550           374973 32 +  18854210 ATGCTAAAA--TAACTCTACTGTTTTTGCATACA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               427801 145 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e canFam3.chr35            26388475 56 +  26524999 I

a score=552425.000000
s hg38.chr6_GL000254v2_alt  1530843 43 +   4827813 CTCTGATTCCAAACAAAACTTTTC-ATAAGCTTCCTCTATCTCT
s panTro5.chr6             30401022 43 + 175400573 CTCTGATTCCAAACAAAACTTTTC-ATAAGCTTCCTCTATCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30635314 43 + 173848474 CTCTGATTCCAAACAAAACTTTTC-ATAAGCTTCCTCTATCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     343065 43 +   2037526 CTCTGATTCCAAACAAAACTTTTC-ATAAGCTTCCTCTATCTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75006353 43 + 122973662 CTCTGATTCCAAACAAAACTTTTC-ATAAGCTTCCTCTATCTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30896577 41 + 172585720 CTCTGATTCCAAACAAAAC--TTC-ATAAGCTTCCTCTATCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30186151 41 - 170955103 CTCTGATTCCAAACAAAAC--TTC-ATAAGCTTCCTCTATCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     435006 41 +   1495729 CTCTGATTCCAAACAAAAC--TTC-ATAAGCTTCCTCTATCTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     538649 41 -    863181 CTCTGATTCCAAACAAAAC--TTC-ATAAGCTTCCTCTATCTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29685416 41 -  71996105 CTCTGATTCCAAACAAAAC--TTC-ATAAGCTTCCTCTATCTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     420875 41 -    735854 CTCTGATTCCAAACAAAAC--TTC-ATGAGCTTCCTCTATCTCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     327436 41 -   1829203 CTCTGACTCCAAACAAAAC--TTC-ATAAGCTTCCTCTATCTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30516488 43 + 171630274 CTCTGATTCCAAACAGAACTTTTC-ATAAGCTTCCTCTATCTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           320075 43 +    515838 CTCTGATTCCAAACAGAACTTTTC-ACAAGCTTCCTCTATCTCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     950869 43 -   1771730 CTCTGATTCCAAACAGAACTTTTC-ATAAGCTTCCTCTATCTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     134723 43 -    486031 CTCTGATTCCAAAAAGAACTTTTC-ATAAGCTTCCTCTATCTCT
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               427946 43 + 123392446 CTCTGATTCCAAATGAAACTTTTC-ATAAGCTGCTTCTATCTCT
i micMur3.chr6             I 145 C 0
s proCoq1.NW_012149775v1     384219 43 -   1411461 CTCTGATTCCAAACGAAACTTTTC-ATAAGCTGCTTCTATCTCT
i proCoq1.NW_012149775v1   C 0 I 24
s otoGar3.GL873550           375005 36 +  18854210 --ATGACTCCAAATGAAACTTTTTAATAAGCTTCTTCT------
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58129895 141 -  94987271 I
e canFam3.chr35            26388475 56 +  26524999 I

a score=27200.000000
s hg38.chr6_GL000254v2_alt  1530886 2 +   4827813 GG
s panTro5.chr6             30401065 2 + 175400573 GG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30635357 2 + 173848474 GG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     343108 2 +   2037526 GG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75006396 2 + 122973662 GG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30896618 2 + 172585720 GG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30186192 2 - 170955103 GG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     435047 2 +   1495729 GG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     538690 2 -    863181 GG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29685457 2 -  71996105 GG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     420916 2 -    735854 GG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     327477 2 -   1829203 GG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30516531 2 + 171630274 GG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           320118 2 +    515838 GG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     950912 2 -   1771730 GG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     134766 2 -    486031 GG
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               427989 2 + 123392446 GG
i micMur3.chr6             C 0 I 198
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     384262 24 -   1411461 I
e canFam3.chr35            26388475 56 +  26524999 I
e otoGar3.GL873550           375041 0 +  18854210 C

a score=428562.000000
s hg38.chr6_GL000254v2_alt  1530888 38 +   4827813 ATCTCTGGGTCCAACTCATCATTAATATCATCCAAGTG
s panTro5.chr6             30401067 38 + 175400573 ATCTCTGGGTCCAACTCATCATTAATATCATCCAAGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30635359 38 + 173848474 ATCTCTGGGTCCAACTCATCATTAATATCATCCAAGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     343110 38 +   2037526 ATCTCTGGGTCCAACTCATCATTAATATCATCCAAGTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75006398 38 + 122973662 ATCTCTGGGTCCAACTCATCATCAGTATCATCCAAGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30896620 38 + 172585720 ATCTCTGGGTCCAACTCATCATCAATATCATCCAAGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30186194 38 - 170955103 ATCTCTGGGTCCAACTCATCATCAATATCATCCAAGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     435049 38 +   1495729 ATCTCTGGGTCCAACTCATCATCAATATCATCCAAGTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     538692 38 -    863181 ATCTCTGGGTCCAACTCATCATCAATATCATCCAAGTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29685459 38 -  71996105 ATCTCTGGGTCCAACCCATCATCAATATCATCCAAGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     420918 38 -    735854 ATCTCTGGGTCCAACTCATCATCAATATCATCCAAGTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     327479 38 -   1829203 ATCTCTGGGTCCAACTCATCATCAATATCATCCAAGTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30516533 38 + 171630274 ATCTCTGGATCCAAATCATCAGCAATATCATCCACGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           320120 38 +    515838 ATCTCTGGGTCCAACTCGTCAGCAATATCATCCATGTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     950914 38 -   1771730 ATCTCTGGGTCCAACTCTTCAGCAATATCATCCATGTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     134768 38 -    486031 ATCTCTGGGTCCAACTCGTCAGCAATATCATCCATGTG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           375041 38 +  18854210 ATCTCTGAGTCCACACCATCATCAATACCATTCAAGTA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               427991 198 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     384262 24 -   1411461 I
e canFam3.chr35            26388475 56 +  26524999 I

a score=507557.000000
s hg38.chr6_GL000254v2_alt  1530926 45 +   4827813 TGGATCACCAGTCCCTGAAAAATCTGTTCCATTTTCTTCATAATC
s panTro5.chr6             30401105 45 + 175400573 TGGATCACCAGCCCCTGAAAAATCTGTTCCATTTTCTTCATAATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30635397 45 + 173848474 TGGATCACCAGCCCCTGAAAAATCTGTTCCATTTTCTTCATAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     343148 45 +   2037526 TGGATCACCAGCCCCTGAAAAATCTGTTCCATTTTCTTCATAATC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75006436 44 + 122973662 TGGATCACCAG-CCCTGATAAATCTGTTCCATTTTCTTCATAATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30896658 45 + 172585720 TGGATCACCAGCCCCTGATAAATCTGTTTCACTTTCTTCATAATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30186232 45 - 170955103 TGGATCACCAGCCCCTGATAAATCTGTTTCACTTTCTTCATAATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     435087 43 +   1495729 TGGATCACCAGCCCCTGATAAA--TGTTTCACTTTCTTCATAACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     538730 45 -    863181 TGGATCACCAGCCCCTGATAAATCTGTTTCACTTTCTTCATAATC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29685497 45 -  71996105 TGGATCACCAGCCCCTGATAAATCTGTTCCACTTTCTTCATAATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     420956 45 -    735854 TGGATCACCAGCCCCTGATAAATCTGTTCCACTTTCTTCATAATC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     327517 45 -   1829203 TGGATCACCAGCCCCTGATAAATCTGTTCCACTTTCTTCATAATC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30516571 43 + 171630274 TGGATCACCAG--CCAAATAAATCTGTTCAATTTTCTTCATAATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           320158 43 +    515838 TGGATCACCAG--CCAAATAAATCTGTTCCATTTTCTTCATAATC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     950952 43 -   1771730 TGGATCACCAG--CCAAATAAATCTGTTCAATTTTCTTCATAATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     134806 43 -    486031 TGGATCACCAG--CCAAATAAATCTGTTCAATTTTCCTCATAATC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     384286 45 -   1411461 TGGATCACCAGCCCCCGATAAATCTGTTCCATCTTCTTCATAATC
i proCoq1.NW_012149775v1   I 24 I 136
s otoGar3.GL873550           375079 43 +  18854210 TAGATGACTAG--CCCGACATATCTGTTCCATTTTCTTCATAATC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               427991 198 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e canFam3.chr35            26388475 56 +  26524999 I

a score=1204092.000000
s hg38.chr6_GL000254v2_alt  1530971 173 +   4827813 CAGAAAAAAAGTCCTCTTTT-------------------------------TCAA---GTAACTCTTGATA---TGC------------------------------TTCTTGG---TAA--------------------TCCGGATCAGCTGCAGTGAAAGGAACACTATGAAACAC---------------------------------------------------------AATAAC-------------TATGTGAATG--------------------------------------------------------------------------------------ACCACTATAAAATGTTGGTTCATTCACATAGTAATTGGGATCTTTTTTGGCTGTTGTATTTCTGTATGA
s panTro5.chr6             30401150 173 + 175400573 CAGAAAAAAAGTCCTCTTTT-------------------------------TCAA---GTAACTCTTGATA---TGC------------------------------TTCTTGG---TAA--------------------TCCAGATCAGCTGCAGTGAAAGGAACACTATGAAACAC---------------------------------------------------------AATTAC-------------TATGTGAGTG--------------------------------------------------------------------------------------AACACTATAAAATGTTGGTTCATTCACATAGTAATTGGGATCTTTTTTGGCTGTTGTATTTCTGTATGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30635442 173 + 173848474 CAGAAAAAAAGTCCTCTTTT-------------------------------TCAA---GTAACTCTTGATA---TGC------------------------------TTCTTGG---TAA--------------------TCCAGATCAGCTGCAGTGAAAGGAACACTATGAAACAC---------------------------------------------------------AATTAC-------------TATGTGAGTG--------------------------------------------------------------------------------------AACACTATAAAATGTTGGTTCATTCACATAGTAATTGGGATCTTTTTTGGCTGTTGTATTTCTGTATGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     343193 173 +   2037526 CAGAAAAAAAGTCCTCTTTT-------------------------------TCAA---GTAACTCTTGATA---CGC------------------------------TTCTTGG---TAA--------------------TCCGGATCAGCTGCAGTGAAAGGAACACTATGAAACAC---------------------------------------------------------AATTAC-------------TATGTGAATG--------------------------------------------------------------------------------------AACACTATAAAATGTTGGTTCATTCACATAGTAATTGGGATCTTTTTTGGCTGTTGTATTTCTGTATGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75006480 173 + 122973662 CAGAAAAAAAGTCCTCTTTT-------------------------------TCAA---GTAACTCTTGATA---TGC------------------------------CTCTTGG---TAA--------------------TCCGGATCAGTTGCAGTGAAAGGAACACTATGAAACAC---------------------------------------------------------AATTAC-------------TATGTGAATG--------------------------------------------------------------------------------------AACACTATAAAATGTTGGTTCATTCACATAGTAATTGGGATCTTTTTTGGGTACTGCATTTCTGTATGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30896703 151 + 172585720 TAGAAAAAAAGTCCTCTTTT-------------------------------TCAA---GTAACTCCTGATA---TGC------------------------------CTCTTGG---GAA--------------------TCTGGACTGGCTGCAGTGAAACGAACACTATGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAATGCTGGTTCATTCACATAGCAGTTGGGATCTTTTTCGGGTGTTGCATTTCTGCATGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30186277 151 - 170955103 TAGAAAAAAAGTCCTCTTTT-------------------------------TCAA---GTAACTCCTGATA---TGC------------------------------CTCTTGG---GAA--------------------TCTGGACTGGCTGCAGTGAAACGAACACTATGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAATGCTGGTTCATTCACATAGCAGTTGGGATCTTTTTCGGGTGTTGCATTTCTGCATGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     435130 151 +   1495729 TAGAAAAAAAGTCCTCTTTT-------------------------------TCAA---GTAACTCCTGATA---TGC------------------------------CTCTTGG---GAA--------------------TCTGGATTGGCTGCAGTGAAACGAACACTATGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAATGCTGGTTCATTCACATAGCAGTTGGGATCTTTTTCGGGTGTTGCATTTCTGCATGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     538775 151 -    863181 TAGAAAAAAAGTCCTCTTTT-------------------------------TCAA---GTAACTCCTGATA---TGC------------------------------CTCTTGG---GAA--------------------TCTGGATTGGCTGCAGTGAAACGAAAACTATGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAATGCTAGTTCATTCACATAGCAGTTGGGATCTTTTTCGGGTGTTGCATTTCTGCATGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29685542 151 -  71996105 TAGAAAAAAAGTCCTCTTTT-------------------------------TCAA---GTAACTCTTGATA---TGC------------------------------CTCTTGG---GAA--------------------TCTGGATTGGCTGCAGTGAAACGAACACTATGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAATGCTGGTTCATTCACATAGTAATTGGGATCTTTTTCGGGTGTTGCATTTCTGCATGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     421001 151 -    735854 TAGAAAAAAAGTCCTCTTTT-------------------------------TCAA---GTAACTCCTGATA---TGC------------------------------CTCTTGG---GAA--------------------TCTGGATTGGCTGCAGTGAAACGAACACTATGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAATGCTGGTTCATTCACATAGCAGTTGGGATCTTTTTCGGGTGTTGTATTTCTGCATGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     327562 151 -   1829203 TAGAAAAAAAGTCCTCTTTT-------------------------------TCAA---GTAACTCTTGATA---TGC------------------------------CTCTTGG---GAA--------------------TCTGGATCAGCTGCAGTGAAACGAACACTATGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAATGCTGGTTCATTCACATAGCAATTGGGATCTTTTCCGGGTGTTGCATTTCTGTATGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30516614 148 + 171630274 TAGAAAAG-AGTCCCATTTT-------------------------------TCAA---GTAACTCTAGATA---TTC------------------------------CTCTTGG---TAA--------------------TCTGGATCAGCTACAATAAAAGGAACACTG--AGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAATGTTGGTTCATTCACATAGTGATTACGATCATTTTCGGGTGTTGCATTTCTATATGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           320201 149 +    515838 TAGAAAAACAGTCCTATTTT-------------------------------TCAA---GTAACTCTAGATG---TTC------------------------------CTCTTGG---TAA--------------------TCTGGATCAGCTACAGTAAAAGGAACACTA--AGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAATGTTGGTTCAATCACATAGTAATTAGGATCATTTTCGGGTGCTGCATTTCTGTATGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     950995 149 -   1771730 TAGAAAAACACTCCTATTTT-------------------------------TCAA---GTAACTCTAGATG---TTC------------------------------CTCTTGG---TAA--------------------TCTGGATCAGCTACAGTAAAAGGAACACTA--CGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAATGTTGGTTTATTCACATAGTAATTACGATCATTTTCGGGTGTTGCATTTCTGTATGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     134849 149 -    486031 TAGAAAAACAGTCCTATTTT-------------------------------TCAA---GTAACTCTAGATG---TTC------------------------------CTCTTGG---TAA--------------------TCTGGATCAGCTACAGTAAAAGGAACACGA--AGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAATGTTGGTTCATTCACATAGTAATTACGATCATTTTCGGGTGTTGCATTTCTGTATGA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           375122 413 +  18854210 -TGGAAAGAAATCCTCTTTTTAtttctttcttttttttttgagacctagtctcaagctgtcaccctgggtagagtgctgtcgcatcacagctcacagcaacctccaactcttgggcttaagcgattcccttgcctcaccctcccaagtagctggaactacaggcacccaccacaatgcccagctattttttgttccagttgtcattgttgtttagctggcctgggctatgttcgaacttgccagcctcggggtgtatgtggctgatgccctagccgctgagctacaagcactgagccAAAATCCTCTTTTTCAAGTAATTCTTGTTATTCCTCTTGGTAAAAGTAACACCATCAGTACAAACTGTTGGTTCAGTTATATACTAGTGAGGATCATTTTTGGGAATTGCTTCTTTG-----
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               427991 198 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     384331 136 -   1411461 I
e canFam3.chr35            26388475  56 +  26524999 I

a score=2313545.000000
s hg38.chr6_GL000254v2_alt  1531144 185 +   4827813 TGAAGTTGCATGGACTCTACCCCAATTACTGCACTGGAGTTCTACAAGCTTCAAGAGCATCTG--TTTCATGTCTCTGCCACAGCTTGCATCTATAACAACATTTTCAATTTCCTGAATAATTTCTTCCATATCAGTCCTTCC-TTTTCCTTCCAAGCATCTTCCAAAACTGACCCTGTCAACTTCAG
s panTro5.chr6             30401323 185 + 175400573 TGAAGTTGCATGGACTCTACCCCAATTACTGCACTGGAGTTCTACAAGCTTCAAGAGCATCTG--TTTCATGTCTCTGCCACAGCTTGCATCTATAACGACATTTTCAATTTCCTGAATAATTTCTTCCATATCAGTCCTTCC-TTTTCCTTCCAAGCATCTTCCAAAACTGACCCTGTCAACTTCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30635615 185 + 173848474 TGAAGTTGCATGGACTCTACCCCAATTACTGCACTGGAGTTCTACAAGCTTCAAGAGCATCTG--TTTCATGTCTCTGCCACAGCTTGCATCTATAACGACATTTTCAATTTCCTGAATAATTTCTTCCATATCAGTCCTTCC-TTTTCCTTCCAAGCATCTTCCAAAACTGACCCTGTCAACTTCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     343366 185 +   2037526 TGAAGTTGCATGGACTCTACCCCAATTACTCCACTGGAGTTCTACAAGCTTCAAGAGCATCTG--TTTCATGTCTCTGCCACAGCTTGCATCTATAGCAACATTTTCAATTTCTTGAATACTTTCTTCCATATCAGTCCTTCC-TTTTCCTTCCAAGCATCTTCCAAAACTGACCTTGTCAACTTCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75006653 186 + 122973662 TGAAGTTGCATGGACTCTACCCCAGTTACTGCACTGGAGTTCTACAAGCTTCAAGGGCATCTG--TTTCATGTCTCTGCCACAGTTTGCATCTATAACAACATTTTCAATTTCCTGAATAATTTCTTCCCTATCAGTCCTTCCTTTTTCCTTCCAAGCATCTTCCAAAACTGACCCTGTCAACTTCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30896854 186 + 172585720 TGAAGTTGCATGGACTCTACCCCAGTTACTGCACTGGAGCTCTACAAGCTTCAAGAGCATCTG--CTTCATGTCTCTGCCACAGTTTGCATCTATAACAACATTTTCAATTTCATAAATAATTTCTTCCATATCAGTCCCTCCTTTTTCCTTCCAAGCATCTTCCAAAACTGACCCTGTCAACTTCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30186428 186 - 170955103 TGAAGTTGCATGGACTCTACCCCAGTTACTGCACTGGAGCTCTACAAGCTTCAAGAGCATCTG--CTTCATGTCTCTGCCACAGTTTGCATCTATAACAACATTTTCAATTTCATAAATAATTTCTTCCATATCAGTCCCTCCTTTTTCCTTCCAAGCATCTTCCAAAACTGACCCTGTCAACTTCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     435281 186 +   1495729 TGAAGTTGCATGGACTCTACCCCAGTTACTGCACTGGAGCTCTACAAGCTTCAAGAGCATCTG--CTTCATGTCTCTGCCACAGTTTGCATCTATAACAACATTTTCAATTTCATAAATAATTTCTTCCATATCAGTCCCTCCTTTTTCCTTCCAAGCATCTTCCAAAACTGACCCTGTCAACTTCAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     538926 186 -    863181 TGAAGTTGCATGGACTCTACCCCAGTTACTGCACTGGAGCTCTACAAGCTTCAAGAGCATCTG--CTTCATGTCTCTGCCACAGTTTGCATCTATAACAACATTTTCAATTTCCTGAATAATTTCTTCCATATCAGTCCCTCCTTTTTCCTTCCAAGCATCTTCCAAAACTGACCCTGTCAACTTCAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29685693 186 -  71996105 TGAAGTTGCATGGACTCTACCCCAGTTACTGCACTGGAGCTCTACAAGCTTCAAGAGCATCTG--CTTCATGTCTCTGCCATAGTTTGCATCTATAACAATATTTTCAATTTCCTAAATAATTTCTTCCATATCAGTCCCTCCTTTTTCCTTCCAAGCATCTTCCAAAACTGACCCTGTCAACTTCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     421152 186 -    735854 TGAAGTTGCATGGACTCTACCCCAGTTACTGCACTGGAGCTCTACAAGCTTCAAGAGCATCTG--CTTCATGTCTCTGCCACAGTTTGCATCTATAACAACATTTTCAATTTCCTAAATAATTTCTTCCATATCAGTCCCTCCTTTTTCCTTCCAAGCATCTTCCAAAACTGACCCTGTCAACTTCAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     327713 186 -   1829203 TGAAGTTGCATGGACTCTACCCCAGTTACTACACTGGAGCTCTACAAGCTTCAAGAGCATCTG--CTTCACGTCTCTGCCACAGTTTGCATCTATAACAACATTTTCAGTTTCCTAAATAATTTCTTCCATATCAGTCCCTCCTTTTTCTTTCCAAGCATCTTCCAAAACGGACCCTGTCAACTTCAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30516762 182 + 171630274 CGAAGTTACATGGACTCCA-CCCAGTTACTGCACTGGAGTTCTACAAGCTTCAAGAGCA--TG--TTTCACGTCTCTGCTGCAGTTTGCACCCAGGACAACATTTTCAA-TTCCTGAATAATTTATTCCATATCAGTCCTTCCCTTTTTCTTCCAAGCATCTTCCAAAACTGACCCTGTCAACTTCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           320350 184 +    515838 CGAAGTTGCACGGACTCCA-CCCAGTTACTGCACTGGAGTTCTACAAGCTTCAAGAGCA--TGTTTTTCATGTCTCTGCTGCAGTTTGCACCCATGACAACATTTTCAA-TTCCTGAATAATTTCTTCCGAATCCCGCTTTCCCTTTTCCTTCCGAGCATCTTCCAAAACTGACCCTGTCAACTTCAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     951144 181 -   1771730 CGAAGTTGCATGGACTCCA-CCCAGTTACTGCACTGGAGTTCTACAAGCTTCAAGAGCA--TG--TTTCACGTCTCTGCTGCAGTTTGCACCCATGACAACATTTTCAA-TTCCTGAATAATTTCTT-CATATCAGTCCTTCCCTTTTCCTTCCGAGCATCTTCCAAAACTGACCCTGTCAACTTCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     134998 182 -    486031 CGAAGTTGCATGGACTCCA-CCCAGTTACTGCACTGGAGTTCTACAAGCTTCAAGAGCA--TG--TTTCACGTCTCTGCTTCCGTTTGCACCCATGACAACATTTTCAA-TTACTGAATAATTTCTTCCATATCAGTCCTTCCCTTTTCCTTCCGAGCATCTTTCAAAACTGACCTTGTCAACTTCAG
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               428189 183 + 123392446 TGAAGTTGCATGGGCTCTACCCCAGTTATTCAGCCAGAGTTCTACCAGCTTCCAGAGCTTCTA--TTTTACATCTCTGCTGCAGTCTGCATTTAGGACAACATTTTCAATTGTCTGAATAATTTCTTCCATATCAGTCCTTCTTTTTTCCCTCCAGGCATCTTCCGAAA---ACCCTGTCAAATTCag
i micMur3.chr6             I 198 I 741
s proCoq1.NW_012149775v1     384467 183 -   1411461 TGAAGTTGCATGGACTCTACCCCAGTTACTCAACCGGAGTTCTACCAGCTTCCAGAGTTTCTA--TTTTAGATCTCTGTGGCAGTTTGCATCTGGGACAACATTTTCGATTCTCTGAATAATTTCTTCCGTATCACTCTTTCCTTTTTCCCTCCAGGCATCTTCTGAAA---ACCCTGTCAACTTCAG
i proCoq1.NW_012149775v1   I 136 C 0
s otoGar3.GL873550           375535 148 +  18854210 ---------------------------------CTGAAATCCTACAATCTTCCAAAGCATCTG--TTTTACATCTCTGCTGTAGTTTGCATCTAGG---ACATTTTCAATTATCTGAATA--TTCTTCCATAGGAGTTTTTTCTTTTTTCTTCCAAGTACTTTTCAAAACTGATCCTGTTGACTTCAG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58129895 141 -  94987271 I
e canFam3.chr35            26388475  56 +  26524999 I

a score=608754.000000
s hg38.chr6_GL000254v2_alt  1531329 48 +   4827813 CAATTTTATTGCACAAATTAAGCTGTCATCCATGGGATTAGAAAAGAG
s panTro5.chr6             30401508 48 + 175400573 CAATTTTATTGCACAAATTAAGCTGTCATCCATGGGATTAGAAAAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30635800 48 + 173848474 CAATTTTATTGCACAAATTAAGCTGTCATCCATGGGATTAGAAAAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     343551 48 +   2037526 CAATTTTATTGCACAAATTAAGCTGTCATCCATGGGATTAGAAAAGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75006839 48 + 122973662 CAATTTTATTGCACAAATTAAGCTGTCATCCATGGGATTAGAAAAGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30897040 48 + 172585720 CAATTTTATTGCACAAATTAAGCTGTCATCCATGGGATTAGAAAAGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30186614 48 - 170955103 CAATTTTATTGCACAAATTAAGCTGTCATCCATGGGATTAGAAAAGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     435467 48 +   1495729 CAATTTTATTGCACAAATTAAGCTGTCATCCATGGGATTAGAAAAGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     539112 48 -    863181 CAATTTTATTGCACAAATTAAGCTGTCATCCATGGGATTAGAAAAGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29685879 48 -  71996105 CAATTTTATTGCACAAATTAAGCTGTCATCCATGGGATTAGAAAAGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     421338 48 -    735854 CAATTTTATTGCACAAATTAAGCTGTCATCCATGGGATTAGAAAAGAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     327899 48 -   1829203 CAATTTTATTGCACAAATTAAGCTGTCATCCATGGGATTAGAAAAGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30516944 48 + 171630274 TAATTTTACAGCACAAATTAAGTTGTCATCCATGGGATTAGAAAAGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           320534 48 +    515838 TAATTTTACTGCACAAATTAAGTTGTCATCCAAGGATTTAGAAAAGAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     951325 48 -   1771730 TAATTTTACTGCACAAATTAAGTTGTCATCCAAGGGATTAGAAAAGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     135180 48 -    486031 TAATTTTACTGCACAAATTAAGTTGTCATCCACAGGATTAGAAAAGAG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     384650 48 -   1411461 TAAATTTACTGCACAAATCAAGTTATCATCCACATGATTAGAAAAGAG
i proCoq1.NW_012149775v1   C 0 I 301
s otoGar3.GL873550           375683 47 +  18854210 TAAGTTTACTGCACAAATTAAGGTGTCATTCATAGGATTAGAAAAGA-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e canFam3.chr35            26388475 56 +  26524999 I

a score=76830.000000
s hg38.chr6_GL000254v2_alt  1531377 7 +   4827813 GGCATTC
s panTro5.chr6             30401556 7 + 175400573 GGCATTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30635848 7 + 173848474 GGCATTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     343599 7 +   2037526 GGCATTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75006887 7 + 122973662 GGCATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30897088 7 + 172585720 GGCATTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30186662 7 - 170955103 GGCATTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     435515 7 +   1495729 GGCATTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     539160 7 -    863181 GGCATTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29685927 7 -  71996105 GGCATTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     421386 7 -    735854 GGCATTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     327947 7 -   1829203 GGCATTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30516992 7 + 171630274 GGCATTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           320582 7 +    515838 AGCATTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     951373 7 -   1771730 GGCATTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     135228 7 -    486031 GGCATTC
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     384698 301 -   1411461 I
e canFam3.chr35            26388475 56 +  26524999 I
e otoGar3.GL873550           375730 0 +  18854210 C

a score=486530.000000
s hg38.chr6_GL000254v2_alt  1531384 47 +   4827813 GGGCATTCGGCAACTCCTGAAGACCAACCTGAAGAATATCTGCCCTT
s panTro5.chr6             30401563 47 + 175400573 GGGCATTCGGCAACTCCTGAAGACCAACCTGAAGAATATCTGCCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30635855 47 + 173848474 GGGCATTCGGCAACTCCTGAAGACCAACCTGAAGAATATCTGCCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     343606 47 +   2037526 AGGCATTCGGCAACTCCTGAAGACCAACCTGAAGAATATCTGCCCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75006894 47 + 122973662 GGGCATTCGGCAACTCCCGAAGACCAACCTGAAGAATATCTGCCCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30897095 47 + 172585720 AGCCATTCGGCAACTCCCAAAGACCAACCTGAAGAATATCTGCCCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30186669 47 - 170955103 AGGCATTCGGCAACTCCCAAAGACCAACCTGAAGAATATCTGCCCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     435522 47 +   1495729 AGGCATTCGGCAACTCCCAAAGACCAACCTGAAGAATATCTGCCCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     539167 47 -    863181 AGGCATTCGGCAACTCCCAAAGACCAACCTGAAGAATATCTGCCCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29685934 47 -  71996105 AGGCATTCGGCAACTCCCAAAGACCAACCTGAAGAATATCTGCCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     421393 47 -    735854 AGGCATTCAGCAACTCCCAAAGACCAACCTGAAGAATATCTGCCCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     327954 47 -   1829203 AGGCATTCGGCAACTCCCAAAGACCAATCTGAAGAATATCTGCCCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30516999 33 + 171630274 A--------ATAACTCCCGCAGACC------AAGAATATTTGCCCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           320589 39 +    515838 A--------GTAACTCCCGAAGACCAACCTGAAGAATATTTGACCTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     951380 39 -   1771730 A--------GTAACTCCCAAAGACCAACCTGAAGAATATTTGCCCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     135235 39 -    486031 A--------GTAACTCCCGAAGACCAACCTGAAGAATATTTGCCCTT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     384999 47 -   1411461 GGGTATTCAGCAACTACCGAAGACCAGCCTGAAAAACATCTGCTCTT
i proCoq1.NW_012149775v1   I 301 C 0
s otoGar3.GL873550           375730 44 +  18854210 AGGTATTCTGCAACTTC---AGACCAGCCTGAAGAATATCTGTTCCT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e canFam3.chr35            26388475 56 +  26524999 I

a score=968798.000000
s hg38.chr6_GL000254v2_alt  1531431 89 +   4827813 GTAACCTGTCCATTTGTTCCTCTGATCTCCAGGTTATGATAAAGCTCT-CCCAGAAAGGGTACAAATGCATGAAATTGTTTTGGAGTAAC
s panTro5.chr6             30401610 89 + 175400573 GTAACCTGTCCATTTGTTCCTCCGATCTCCAGGTTATGATAAAGCTCT-CCCAGAAAGGGTACAAATGCATGAAATTGTTTTGGAGTAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30635902 89 + 173848474 GTAACCTGTCCATTTGTTCCTCCGATCTCCAGGTTATGATAAAGCTCT-CCCAGAAAGGGTACAAATGCATGAAATTGTTTTGGAGTAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     343653 89 +   2037526 GTAACCTGTCCATTTGTTCCTCTGATCTCCAGGTTATGATAAAGCTCT-CCCAGAAAGGGTACAAATGCATGAAATTGTTTTGGAGTAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75006941 89 + 122973662 GTAACCTGTCCGTTTGTTCCTCTGATCTCCAGGTTATAATAAAGCTCT-CCCAGAAAGGGTACAAATGCATGAAATTGTTTTGGAGTAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30897142 89 + 172585720 GTAACCTGTCCATTTGTTCCTCTGATCTCCAGGTTACGATAAAGCTCT-CCCAGAAAGGGTACAAATGCATGAAATTGTTTTGGAGTAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30186716 89 - 170955103 GTAACCTGTCCATTTGTTCCTCTGATCTCCAGGTTACGATAAAGCTCT-CCCAGAAAGGGTACAAATGCATGAAATTGTTTTGGAGTAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     435569 89 +   1495729 GTAACCTGTCCATTTGTTCCTCTGATCTCCAGGTTACGATAAAGCTCT-CCCAGAAAGGGTACAAATGCATGAAATTGTTTTGGAGTAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     539214 89 -    863181 GTAACCTGTCCATTTGTTCCTCTGATCTCCAGGTTACGATAAAGCTCT-CCCAGAAAGGGTACCAATGCACGAAATTGTTTTGGAGTAAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29685981 89 -  71996105 GTAACCTGTCCATTTGTTCCTCTGATCTCCAGGTTACGATAAAGCTCT-CCCAGAAAGGGTACAAATGCATGAAATTGTTTTGGAGTAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     421440 89 -    735854 GTAACCTGTCCATTTGTTCCTCTGATCTCCAGGTTACGATAAAGCCCT-CCCAGAAAGGGTACAAATGCATGAAATTGTTTTGGAGTAAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     328001 88 -   1829203 GTAACCTGTCCATTTGTTCCTCTGATCTCCAGGTTACG-TAAAGCTCT-CCCAGAAAGGGTACAAATGCATGAAATAGTTTTGGAGTAAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30517032 88 + 171630274 -TAACCTGTCCATTTGTTATTTTGACCTCCAGGTTAAGAAAAAGCTCT-CTCAGAAAGGGCACAAATGCAGGAAACTGTTTTCGAGTAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           320628 87 +    515838 -TAACCTGTCCATTTGTTATTCTGATCTGCAGGTTAAGAAAAAGCTCT-CTCAGAAAGGACACAAATGCATGAAAC-GTTTTCGAGTAAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     951419 86 -   1771730 -TAACCTGTCCATTTGTTATTCTGATCTCCAGGTTAAGAAAAAG--CT-CTCAGAAAGGGAACAAATGCATGAAACTGTTTTCGAGTAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     135274 88 -    486031 -TAACCTGTCCATCTGTTATTCTGATCTCCAGGTTAAGAAAAAGCTCT-CTCAGAAAGGGCACAAATGCATGAAACTGTTTTTGAGTAAC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     385046 90 -   1411461 GTAACCCGTCCATTCGTTGCCTAGATCTCCAGGTTAAGATAAAGCTTTCCCCAAAAAGAGTACAAACGCATGAAATTGTTTTTGAGTAAC
i proCoq1.NW_012149775v1   C 0 I 164
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e canFam3.chr35            26388475 56 +  26524999 I
e otoGar3.GL873550           375774  0 +  18854210 C

a score=137763.000000
s hg38.chr6_GL000254v2_alt  1531520 13 +   4827813 TTCATCCCCTTTT
s panTro5.chr6             30401699 13 + 175400573 TTCATCCCCTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30635991 13 + 173848474 TTCATCCCCTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     343742 13 +   2037526 TTCATCCCCTTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75007030 13 + 122973662 TTCATCCCCTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30897231 13 + 172585720 TTCATCCCCTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30186805 13 - 170955103 TTCATCCCCTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     435658 13 +   1495729 TTCATCCCCTTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     539303 13 -    863181 TTCATCCCTTTTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29686070 13 -  71996105 TTCATCCCCTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     421529 13 -    735854 TTCATCCCCTTTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     328089 13 -   1829203 TTCATCCCCTTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30517120 13 + 171630274 TTCACCCCCTTTC
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           320715 13 +    515838 TTCACCCCCTTTT
i saiBol1.JH378341         C 0 I 306
s cebCap1.NW_016107755v1     951505 13 -   1771730 TTCACCCCCTTTT
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496901v1     135362 13 -    486031 TTCACCCCCTTTT
i aotNan1.NW_018496901v1   C 0 I 1
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     385136 164 -   1411461 I
e canFam3.chr35            26388475 56 +  26524999 I
e otoGar3.GL873550           375774  0 +  18854210 C

a score=1182583.000000
s hg38.chr6_GL000254v2_alt  1531533 125 +   4827813 GCAGCTTGATCTTTAATGTCATATTCAGTCCGATATCTTTGAAGTAGAAATTGGCGGAAGGTGCTACTCTCTGTGCTAACTGTCAGATGAT--GTCAGG-TAATTACACAGGTGAGCTCCCATGTAAG
s panTro5.chr6             30401712 125 + 175400573 GCAGCTTGATCTTTAATGTCATATTCAGTCTGACATCTTTGAAGTACAAATTGGCAGAAGGTGCTACTCTCTGTGCTAACTGTTAGATGAT--GTCAGG-TAATTACACAGGTGAGCTCCCATGTAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30636004 125 + 173848474 GCAGCTTGATCTTTAATGTCATATTCAGTCTGACATCTTTGAAGTACAAATTGGCAGAAGGTGCTACTCTCTGTGCTAACTGTCAGATGAT--GTCAGG-TAATTACACAGGTGAGCTCCCATGTAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     343755 125 +   2037526 GCAGCTTGATCTTTAATGTCATATTCAGTCCGACATCTTTGAAGTAGAAACTGGCAGAAGGTGCTACTCTCTGTGCTAACTGTCAGATGAT--GTCAGG-TAATTACACAGGTGAGCTCCCATGTAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75007043 127 + 122973662 GCAGTTTGATCTTTAATGTCATATTCAGTCCGACATCTTTGAAGTAGAAATTGGCGGAAGGTGCTACTCTATGTGCTAACTGTGAGATGATGGGCCAGG-TAATTACACAGGTGAGCTCCCATGTAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30897244 123 + 172585720 GCAGCTTGATCTTTAATGTCATATTCAGTCCAACATCTTTGAAGTAGAAATTTGCGGAAGGTGCTACTCTGTGTG----CTGTCAGATGATGGGCCAGG-TAATTACACAGGCAAGCTCCCATGTAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30186818 123 - 170955103 GCAGCTTGATCTTTAATGTCATATTCAGTCCAACATCTTTGAAGTAGAAATTTGCGGAAGGTGCTACTCTATGTG----CTGTCAGATGATGGGCCAGG-TAATTACACAGGCAAGCTCCCACGTAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     435671 123 +   1495729 GCAGCTTGATCTTTAATGTCATATTCAGTCCAACATCTTTGAAGTAGAAATTTGCGGAAGGTGCTACTCTGTGTG----CTGTCAGATGATGGGCCAGG-TAATTACACAGGCAAGCTCCCATGTAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     539316 123 -    863181 GCAGCTTGATCTTTAATGTCATACTCAGTCCAACATCTTTGAAGTAGAAATTTGCGGAAGGTGCTACTCTATGTG----CTGTCAGATGATGGGCCAGG-TAATTACACAGGCAAGCTCCCATATAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29686083 123 -  71996105 GCAGCTTGATCTTTAATGTCATATTCAGTCCAACATCTTTGAGGTAGAAATTTGCAGAAGGTGCTACTCTATGTG----CTGTCAGATGATGGGCCAGG-TAATTACACAGGCGAGCTCCCATGTAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     421542 123 -    735854 GCAGCTTGATCTTTAATGTCATATTCAGTCCAACATCTTTGAAGTAGAAATTTGCGGAAGGTGCTACTCTATGTG----CTGTCAGATGATGGGCCAGG-TAATTACACAGGCAAGCTCCCATGTAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     328102 123 -   1829203 GCAGCTTGATCTTTAATGTCATATTCAGTCCAACATCCTTGAAGTAGAAATTTGCGGAAGGTGCTACTCTATGTG----CTGTCAGATGATGGGCCAGG-TGATTACACAGGCGAGCTCCCATGTAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30517134 122 + 171630274 GCAGCTTGATCTTTAATGTCATATTCAGTCCGACATTTTTGAAGTCAAAATTTGTGGAAGGTGCTACTCTGTGTG----CTGTCAGATGATGGACCAGG-TAATTATACAAGC-AGCTCCCATGTAAG
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           321034 123 +    515838 GCAGCTTGATCTTTAATGTCATATTCAGTTCGACATTTTTGAAGTCAAAATTTGCGGAAGGTGCTACTCTGTGTG----CTGTCAGATGATGAGCCAGG-TAATTATACAAGCGAGCTCCCATGTAAG
i saiBol1.JH378341         I 306 C 0
s cebCap1.NW_016107755v1     951519 123 -   1771730 GCAGCTTGATCTTTAATGTCATATTCAGTCCGACATTTTTGAAGTCAAAATTTGCGGAAGGTGCTACTCTGTGTG----CTGTCAGATGATGGGCCACG-TAGTTATACAAGTGAGCTCCCATGTAAG
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496901v1     135376 124 -    486031 GCAGCTTGATCTTTAATGTCATACTCAGTCCAACACTTCTGAAGTCAAAATTTGCGGAAGGTGCTACTCTGTGTG----CTATCAGATGATGGGCCAGGTTAATTATACAAGCAAGCTCCCATGTAAG
i aotNan1.NW_018496901v1   I 1 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     385136 164 -   1411461 I
e canFam3.chr35            26388475  56 +  26524999 I
e otoGar3.GL873550           375774   0 +  18854210 C

a score=55242.000000
s hg38.chr6_GL000254v2_alt  1531658 9 +   4827813 AGAAATTTG
s panTro5.chr6             30401837 9 + 175400573 AGAAATTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30636129 9 + 173848474 AGAAATTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     343880 9 +   2037526 AGAAATTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75007170 9 + 122973662 AGAAATTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30897367 9 + 172585720 AGAAATTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30186941 9 - 170955103 AGAAATTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     435794 9 +   1495729 AGAAATTTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     539439 9 -    863181 AGAAATTTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29686206 9 -  71996105 AGAAATTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     421665 9 -    735854 AGAAATTTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     328225 9 -   1829203 AGAAATTTG
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     385136 164 -   1411461 I
e canFam3.chr35            26388475 56 +  26524999 I
e saiBol1.JH378341           321157 0 +    515838 C
e otoGar3.GL873550           375774 0 +  18854210 C
e aotNan1.NW_018496901v1     135500 0 -    486031 C
e cebCap1.NW_016107755v1     951642 0 -   1771730 C
e calJac3.chr4             30517256 0 + 171630274 C

a score=1705674.000000
s hg38.chr6_GL000254v2_alt  1531667 279 +   4827813 Gggctgggcacggtggctcacgcctataatcccagcactttggaaggccgaggcgggtggatcac--aaggtcaggagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaatacaaaaattagccgggcatggtggtgggcacctgtagtcccagctacttaggaggctgaggcaggagaatggcgtgaacctgggaggcggggctcgcagtgagctgagatcacaccactacactccagcctggaagacaaagcaagactccatc
s panTro5.chr6             30401846 279 + 175400573 Gggctgggcacggtggctcacgcctgtaatcccagcactttggaaggccgaggcgggtggatcac--aaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaattagccgggcatggtggtgggcacctgtagtcccagctacttaggaggctgaggcaggagaatggcgtgaacctgggaggcggggctcgcagtgagctgagatcataccacttcactccagcctggcagacagagcaagactccatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30636138 279 + 173848474 Gggctgggcacggtggctcacgcctgtaatcccagcactttggaaggccgaggcgggtggatcac--aaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaattagccgggcatggtggtgggcacctgtagtcccagctacttaggaggctgaggcaggagaatggcgtgaacctgggaggcggggctcgcagtgagctgagatcataccacttcactccagcctggaagacagagcaagactccatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     343889 279 +   2037526 Gggctgggcacggtggctcacgcctgtaatcccagcactttggaaggctgaggcgggtggatcac--aaggtcaggagatcgagaccatcctggctaacatggtgaaaccccatctctaccaaaaatacaaaaattagccgggcatggtggtgggcacctgtagtcccagctacttaggaggctgaggcaggagaatggcgtgaacctgggaggcggggctcgcagtgagctgagatcacaccactacactccagcctggaagacagagcaagactccatc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75007179 279 + 122973662 Gggctgggcacggtggctcacgcctgtaatcccagcactttggaaggctgaggcgggtggatcac--aaggtcaggagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaatacaaaaattaaccgggcatggtggtgggcgcctgtagtcccagctacttaggaggctgaggcaggagaatggtgtgaacctgggaggcggggctcacagtgagctgagatcacaccactacactccagcctggaagacagagcaagactccatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30897376 279 + 172585720 Gggccaggcacagtggctcacgcttgtaatcccagcactttgggaggccgaggcgggtggatcac--aaggtcaggagatcgagaccatcctggctaacacggtgaaacccaatctctactaaaaatacaaaaattagccaagcatggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggtgtgaacctgggaggcagagcttgcagcgagtcgagatcgcgtcactgcactctagcctgggtgacagagcaagattccatc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30186950 279 - 170955103 Gggccaggcacagtggctcacgcttgtaatcccagcactttgggaggccgaggcgggtggatcac--aaggtcaggagatcaagaccatcctggctaacacggtgaaacccaatctctactaaaaatacaaaaattagccaagcatggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggtgtgaacctgggaggcagagcttgcagcgagtcgagatcgcgtcactgcactctagcctgggtgacagagcaagattccatc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     435803 279 +   1495729 Gggccaggcacagtggctcacgcttgtaatcccagcactttgggaggccgaggcgggtggatcac--aaggtcaggagatcgagaccatcctggctaacacggcgaaacccaatctctactaaaaatacaaaaattagccaagcatggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggtgtgaacctgggaggcagagcttgcagcgagtcgagatcgcatcactgcactctagcctgggtgacagagcaagattccatc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     539448 279 -    863181 Gggccaggcacagtggctcacgcttgtaatcccagcactttgggaggccgaggcgggtggatcac--aaggtcaggagatcgagaccatcctggctaacacggtgaaacccaatctctactaaaaatacaaaaattagccaagcatggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggtgtgaacctgggaggcagagcttgcaacgagtcgagatcgcgtcactgcactctagcctgggtgacagagcaagattccatc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29686215 279 -  71996105 Gggccaggcacagtggctcacgcttgtaatcccagcactttgggaggccgaggcaggtggatcac--aaggtcaggagatcgagaccatcctggctaacacggtgaaacccaatctctactaaaaatacaaaaattagccaagcatggtggcgggcgcctatagtcccagctacttgggaggctgaggcaggagaatggtgtgaacctgggaggcagagcttgcagcgagtcgagatcgcgtcactgcactctagcctgggtgacagagcaagattccatc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     421674 279 -    735854 Gggccaggcacagtggctcacgcttgtaatcccagcactttgggaggccgaggcgggtggatcac--aaggtcaggagatcgagaccatcctggctaacacggcgaaacccaatctctactaaaaatacaaaaattagccaagcatggtggcgggcgcctgtagtcccagctacttgggaggctgacgcaggagaatggtgtgaacctgggaggcagagcgtgcagcgagtcgagatcgcatcactgcactctagcctgggtgacagagcaagattccatc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     328234 279 -   1829203 Gggccgcgcacagtggctcacgcctgtaatcctaacactttgggaggccgaggcaggtggatcac--aaggtcaggagatcgagaccatcctggctaacacggtgaaactccatctctactaaaaatacaaaaattagccaagcatggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaacggtgtgaacctgggaggcagagcttgcagtgagtcgagactgcgccactgcactccagcctgggtgacagagcaagactccatc
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           375774 229 +  18854210 Aggccaggcatggtggctcatgcctataatcctagcactctgggaggccaaggagggtggattgcttgagctcctgagttcaagaccagcctgagtgaaa-agcaaaacctcatctctactaaaaatagaaaaa------------------------------------------------ctgaggaaagagaatcacttgagccccagagttggaggttgctgtgagct---atggcaccacagcactctacccagggtgagagcttcagactctgtc
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     385136 164 -   1411461 I
e canFam3.chr35            26388475  56 +  26524999 I
e saiBol1.JH378341           321157   0 +    515838 C
e aotNan1.NW_018496901v1     135500   0 -    486031 C
e cebCap1.NW_016107755v1     951642   0 -   1771730 C
e calJac3.chr4             30517256   0 + 171630274 C

a score=73249.000000
s hg38.chr6_GL000254v2_alt  1531946 13 +   4827813 tcaaaaaaaaaaa
s panPan2.chr6             30636417 13 + 173848474 tcaaaaaaaaaaa
i panPan2.chr6             C 0 I 2
s gorGor5.CYUI01015528v1     344168 13 +   2037526 tcaaaaaaaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75007458 13 + 122973662 tcaaaaaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30897655 13 + 172585720 tcaaaagaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30187229 13 - 170955103 tcaaaagaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     436082 13 +   1495729 tcaaaagaaaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     539727 13 -    863181 tcaaaagaaaaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29686494 13 -  71996105 tcaaaagaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     421953 13 -    735854 tcaaaagaaaaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     328513 13 -   1829203 tcaaaagaagaaa
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           376003 13 +  18854210 tcaaaaaaaaAAA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     385136 164 -   1411461 I
e canFam3.chr35            26388475 56 +  26524999 I
e saiBol1.JH378341           321157  0 +    515838 C
e aotNan1.NW_018496901v1     135500  0 -    486031 C
e cebCap1.NW_016107755v1     951642  0 -   1771730 C
e calJac3.chr4             30517256  0 + 171630274 C
e panTro5.chr6             30402125  0 + 175400573 C

a score=21798.000000
s hg38.chr6_GL000254v2_alt  1531959 5 +   4827813 aaaaa
s gorGor5.CYUI01015528v1     344181 5 +   2037526 aaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75007471 5 + 122973662 aaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30897668 5 + 172585720 gaaaa
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             30187242 5 - 170955103 gaaaa
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     436095 5 +   1495729 gaaaa
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     539740 5 -    863181 gaaaa
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29686507 5 -  71996105 gaaaa
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1     421966 5 -    735854 gaaaa
i manLeu1.NW_012107142v1   C 0 I 1
s colAng1.NW_012115577v1     328526 5 -   1829203 gaaaa
i colAng1.NW_012115577v1   C 0 I 1
s otoGar3.GL873550           376016 5 +  18854210 AAAAA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     385136 164 -   1411461 I
e canFam3.chr35            26388475 56 +  26524999 I
e saiBol1.JH378341           321157 0 +    515838 C
e aotNan1.NW_018496901v1     135500 0 -    486031 C
e cebCap1.NW_016107755v1     951642 0 -   1771730 C
e calJac3.chr4             30517256 0 + 171630274 C
e panPan2.chr6             30636430 2 + 173848474 I
e panTro5.chr6             30402125 0 + 175400573 C

a score=1818.000000
s hg38.chr6_GL000254v2_alt  1531964 4 +   4827813 aaaa
s gorGor5.CYUI01015528v1     344186 4 +   2037526 aaaa
i gorGor5.CYUI01015528v1   C 0 I 4
s nomLeu3.chr1a            75007476 4 + 122973662 aaaa
i nomLeu3.chr1a            C 0 I 4
s otoGar3.GL873550           376021 4 +  18854210 AAGA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     385136 164 -   1411461 I
e canFam3.chr35            26388475 56 +  26524999 I
e saiBol1.JH378341           321157 0 +    515838 C
e aotNan1.NW_018496901v1     135500 0 -    486031 C
e cebCap1.NW_016107755v1     951642 0 -   1771730 C
e calJac3.chr4             30517256 0 + 171630274 C
e colAng1.NW_012115577v1     328531 1 -   1829203 I
e manLeu1.NW_012107142v1     421971 1 -    735854 I
e chlSab2.chr17            29686512 1 -  71996105 I
e cerAty1.NW_012002535v1     539745 1 -    863181 I
e macNem1.NW_012012100v1     436100 1 +   1495729 I
e macFas5.chr4             30187247 1 - 170955103 I
e rheMac8.chr4             30897673 1 + 172585720 I
e panPan2.chr6             30636430 2 + 173848474 I
e panTro5.chr6             30402125 0 + 175400573 C

a score=-62.000000
s hg38.chr6_GL000254v2_alt  1531968 2 +   4827813 gg
s otoGar3.GL873550           376025 2 +  18854210 AA
i otoGar3.GL873550         C 0 I 143
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     385136 164 -   1411461 I
e canFam3.chr35            26388475 56 +  26524999 I
e saiBol1.JH378341           321157 0 +    515838 C
e aotNan1.NW_018496901v1     135500 0 -    486031 C
e cebCap1.NW_016107755v1     951642 0 -   1771730 C
e calJac3.chr4             30517256 0 + 171630274 C
e colAng1.NW_012115577v1     328531 1 -   1829203 I
e manLeu1.NW_012107142v1     421971 1 -    735854 I
e chlSab2.chr17            29686512 1 -  71996105 I
e cerAty1.NW_012002535v1     539745 1 -    863181 I
e macNem1.NW_012012100v1     436100 1 +   1495729 I
e macFas5.chr4             30187247 1 - 170955103 I
e rheMac8.chr4             30897673 1 + 172585720 I
e nomLeu3.chr1a            75007480 4 + 122973662 I
e gorGor5.CYUI01015528v1     344190 4 +   2037526 I
e panPan2.chr6             30636430 2 + 173848474 I
e panTro5.chr6             30402125 0 + 175400573 C

a score=0.000000
s hg38.chr6_GL000254v2_alt  1531970 276 +   4827813 ccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgaggtggcgggcgcctgtagtcctagctactcgggaggctgaggcaggagaatggcgtgaaccccaggaggcggagcctgcagtgagccgagattgcgccactgcactccagcctgggcgacagcgagactccgta
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     385136 164 -   1411461 I
e canFam3.chr35            26388475  56 +  26524999 I
e saiBol1.JH378341           321157   0 +    515838 C
e otoGar3.GL873550           376027 143 +  18854210 I
e aotNan1.NW_018496901v1     135500   0 -    486031 C
e cebCap1.NW_016107755v1     951642   0 -   1771730 C
e calJac3.chr4             30517256   0 + 171630274 C
e colAng1.NW_012115577v1     328531   1 -   1829203 I
e manLeu1.NW_012107142v1     421971   1 -    735854 I
e chlSab2.chr17            29686512   1 -  71996105 I
e cerAty1.NW_012002535v1     539745   1 -    863181 I
e macNem1.NW_012012100v1     436100   1 +   1495729 I
e macFas5.chr4             30187247   1 - 170955103 I
e rheMac8.chr4             30897673   1 + 172585720 I
e nomLeu3.chr1a            75007480   4 + 122973662 I
e gorGor5.CYUI01015528v1     344190   4 +   2037526 I
e panPan2.chr6             30636430   2 + 173848474 I
e panTro5.chr6             30402125   0 + 175400573 C

a score=1374.000000
s hg38.chr6_GL000254v2_alt  1532246 15 +   4827813 tcaaaaaaaaaaaaa
s panTro5.chr6             30402125 15 + 175400573 tcaaaaaaaaaaaaa
i panTro5.chr6             C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     385136 164 -   1411461 I
e canFam3.chr35            26388475 56 +  26524999 I
e saiBol1.JH378341           321157  0 +    515838 C
e otoGar3.GL873550           376027 143 +  18854210 I
e aotNan1.NW_018496901v1     135500  0 -    486031 C
e cebCap1.NW_016107755v1     951642  0 -   1771730 C
e calJac3.chr4             30517256  0 + 171630274 C
e colAng1.NW_012115577v1     328531  1 -   1829203 I
e manLeu1.NW_012107142v1     421971  1 -    735854 I
e chlSab2.chr17            29686512  1 -  71996105 I
e cerAty1.NW_012002535v1     539745  1 -    863181 I
e macNem1.NW_012012100v1     436100  1 +   1495729 I
e macFas5.chr4             30187247  1 - 170955103 I
e rheMac8.chr4             30897673  1 + 172585720 I
e nomLeu3.chr1a            75007480  4 + 122973662 I
e gorGor5.CYUI01015528v1     344190  4 +   2037526 I
e panPan2.chr6             30636430  2 + 173848474 I

a score=300.000000
s hg38.chr6_GL000254v2_alt  1532261 1 +   4827813 g
s panTro5.chr6             30402140 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s otoGar3.GL873550           376170 1 +  18854210 G
i otoGar3.GL873550         I 143 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     385136 164 -   1411461 I
e canFam3.chr35            26388475 56 +  26524999 I
e saiBol1.JH378341           321157 0 +    515838 C
e aotNan1.NW_018496901v1     135500 0 -    486031 C
e cebCap1.NW_016107755v1     951642 0 -   1771730 C
e calJac3.chr4             30517256 0 + 171630274 C
e colAng1.NW_012115577v1     328531 1 -   1829203 I
e manLeu1.NW_012107142v1     421971 1 -    735854 I
e chlSab2.chr17            29686512 1 -  71996105 I
e cerAty1.NW_012002535v1     539745 1 -    863181 I
e macNem1.NW_012012100v1     436100 1 +   1495729 I
e macFas5.chr4             30187247 1 - 170955103 I
e rheMac8.chr4             30897673 1 + 172585720 I
e nomLeu3.chr1a            75007480 4 + 122973662 I
e gorGor5.CYUI01015528v1     344190 4 +   2037526 I
e panPan2.chr6             30636430 2 + 173848474 I

a score=-648.000000
s hg38.chr6_GL000254v2_alt  1532262 3 +   4827813 aaa-
s panTro5.chr6             30402141 2 + 175400573 aa--
i panTro5.chr6             C 0 C 0
s rheMac8.chr4             30897674 2 + 172585720 aa--
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30187248 2 - 170955103 aa--
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     436101 2 +   1495729 aa--
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     539746 2 -    863181 aa--
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29686513 2 -  71996105 aa--
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1     421972 2 -    735854 aa--
i manLeu1.NW_012107142v1   I 1 C 0
s colAng1.NW_012115577v1     328532 2 -   1829203 aa--
i colAng1.NW_012115577v1   I 1 C 0
s otoGar3.GL873550           376171 3 +  18854210 AG-T
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     385136 164 -   1411461 I
e canFam3.chr35            26388475 56 +  26524999 I
e saiBol1.JH378341           321157 0 +    515838 C
e aotNan1.NW_018496901v1     135500 0 -    486031 C
e cebCap1.NW_016107755v1     951642 0 -   1771730 C
e calJac3.chr4             30517256 0 + 171630274 C
e nomLeu3.chr1a            75007480 4 + 122973662 I
e gorGor5.CYUI01015528v1     344190 4 +   2037526 I
e panPan2.chr6             30636430 2 + 173848474 I

a score=8281.000000
s hg38.chr6_GL000254v2_alt  1532265 1 +   4827813 a
s panPan2.chr6             30636432 1 + 173848474 a
i panPan2.chr6             I 2 C 0
s rheMac8.chr4             30897676 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30187250 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     436103 1 +   1495729 a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     539748 1 -    863181 a
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29686515 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     421974 1 -    735854 a
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     328534 1 -   1829203 a
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30517256 1 + 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           321157 1 +    515838 A
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     951642 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     135500 1 -    486031 A
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           376174 1 +  18854210 A
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     385136 164 -   1411461 I
e canFam3.chr35            26388475 56 +  26524999 I
e nomLeu3.chr1a            75007480 4 + 122973662 I
e gorGor5.CYUI01015528v1     344190 4 +   2037526 I
e panTro5.chr6             30402143 0 + 175400573 C

a score=256766.000000
s hg38.chr6_GL000254v2_alt  1532266 24 +   4827813 gaaaTTTGGGACAGATGTGGCCTC
s panTro5.chr6             30402143 24 + 175400573 gaaaTTTGGGACAGATGTGGCCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30636433 24 + 173848474 gaaaTTTGGGACAGATGTGGCCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     344194 24 +   2037526 gaaaTTTGGGACAGATGTGGCCTC
i gorGor5.CYUI01015528v1   I 4 I 9
s nomLeu3.chr1a            75007484 24 + 122973662 gaaaTTTGGGACAGATGTAGCCTC
i nomLeu3.chr1a            I 4 C 0
s rheMac8.chr4             30897677 24 + 172585720 gaaaTTTGGGACAGATGTGTCCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30187251 24 - 170955103 gaaaTTTGGGACAGATGTGTCCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     436104 24 +   1495729 gaaaTTTGGGACAGATGTGTCCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     539749 24 -    863181 gaaaTTTGGGACAGATGTGTCCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29686516 24 -  71996105 gaaaTTTGGGACAGATGTGTCCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     421975 24 -    735854 gaaaTTTGGGACAGATGTGTCCTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     328535 24 -   1829203 gaaaTTTGGGACAGATGTGTCCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30517257 24 + 171630274 GAAATTTGGGACAGGTGTGGCCTC
i calJac3.chr4             C 0 I 8
s saiBol1.JH378341           321158 24 +    515838 GAAATTTCGGACAGATGTGGCCTC
i saiBol1.JH378341         C 0 I 8
s cebCap1.NW_016107755v1     951643 24 -   1771730 GAAATTTGGGACAGATGCGGCCTC
i cebCap1.NW_016107755v1   C 0 I 8
s aotNan1.NW_018496901v1     135501 24 -    486031 GAAATTTGGGACAGATGTGGCCTT
i aotNan1.NW_018496901v1   C 0 I 8
s otoGar3.GL873550           376175 24 +  18854210 GAAACTGGTAGAAGGTATCACCTG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     385136 164 -   1411461 I
e canFam3.chr35            26388475 56 +  26524999 I

a score=1138514.000000
s hg38.chr6_GL000254v2_alt  1532290 107 +   4827813 TGAGTTCCACAAGTTCTTGCAAAGCATCATCTGTTGTAACACAAGCATTCAGGGTCTCTGTAAACTGTTC-AATTTCAGTTTCAAAACTACCAGCCTGCTC-----TGTAAGA
s panTro5.chr6             30402167 108 + 175400573 TGAGTTCCACAAGTTCTTGCAAAGCATCATCTGTTGTAACACAAGCATTCAGGGTCTCTGTAAACTGTTCCAATTTCAGTTTCAAAACTACCAGGCTGCTC-----TGTAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30636457 108 + 173848474 TGAGTTCCACAAGTTCTTGCAAAGCATCATCTGTTGTAACACAAGCATTCAGGGTCTCTGTAAACTGTTCCAATTTCAGTTTCAAAACTACCAGGCTGCTC-----TGTAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     344227 107 +   2037526 TGAGTTCCACAAGTTCTTGCAAAGCATCATCTGTTGTAACACAAGCATTCAGGGTCTCTGTAAACTGTTC-AATTTCCGTTTCAAAACTACCAGGCTGCTC-----TGTAAGA
i gorGor5.CYUI01015528v1   I 9 C 0
s nomLeu3.chr1a            75007508 107 + 122973662 TGAGCTCCACAAGTTCTTGCAAAGCATCATCTGTTGTAACACAAGCATTCAGCGTCTCTGTAAACTGTTC-AATTTCAGTTTCAAAACTACCAGGCTGCTC-----TGTAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30897701 107 + 172585720 TGAGTTCCACAAGTTCTTGCAAAGCATCATCTATTGTAATACAGGCATTCAGGGTCTCTGCAAACTGTTC-AGTTTCAGTTTCAAAACCACCAGGCTGCTC-----TGTAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30187275 107 - 170955103 TGAGTTCCACAAGTTCTTGCAAAGCATCATCTATTGTAATACAGGCATTCAGGGTCTCTGCAAACTGTTC-AGTTTCAGTTTCAAAACCACCAGGCTGCTC-----TGTAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     436128 107 +   1495729 TGAGTTCCACAAGTTCTTGCAAAGCATCATCTATTGTAATACAGGCATTCAGGGTCTCTGCAAACTGTTC-AGTTTCAGTTTCAAAACCACCAGGCTGCTC-----TGTAAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     539773 107 -    863181 TGAGTTCCACAAGTTCTTGCAAAGCATCATCTATTGTAATACAGGCATTCAGCGTCTCTGCAAACTGTTC-AGTTTCAGTTTCAAAACCACCAGGCTGCTC-----TGTAAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29686540  65 -  71996105 TGAGTTCCACAAGTTCTTGCAAAGCATCATCTATTGTAATACAGGCATTCAGGGTCTCTGC------------------------------------------------AAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     421999 107 -    735854 TGAGTTCCACAAGTTCTTGCAAAGCATCATCTATTGTAATACAGGCATTCAGGGTCTCTGCAAACTGTTC-AGTTTCAGTTTCAAAACCACCAGGCTGCTC-----TGTAAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     328559 107 -   1829203 TGAGTTCCACAAGTTCTTGCAAAGAATCATCTGTTGTAACACAAGCATTCAGGGTCTCTGCAAACTGTTC-AGTTTCATTTTCAAAACCACCAGGCTGCTC-----TGTAAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30517289 107 + 171630274 TGAGTTCCACAGGTTCTTGCAAAGCATCATCTGTTGTAATACAAGCATTCAGGGTCTCTGCAAACTGTTC-AATTTCAGTTTCAAAACTGCCAGTCTGCTC-----TGTAACA
i calJac3.chr4             I 8 C 0
s saiBol1.JH378341           321190 106 +    515838 TGAGTTCCACAGGTT-TTGCAAAGCATTATCTGTTGTAATACAAGCATTCAGGGTCTCTGCAAACTGTTC-AGTTTCAGTTTCAAAACTGCCAGTCTGCTC-----TGTAACA
i saiBol1.JH378341         I 8 C 0
s cebCap1.NW_016107755v1     951675 107 -   1771730 TGAGTTCCACAGGTTCTTGCAAAGCATCCTCTGTTGTAATACAAGCATTTAGGGTCTCTGCCAACTGTTC-AATTTCAGTTTCAAAACTGCCAGTCTGCTC-----TGTAACA
i cebCap1.NW_016107755v1   I 8 C 0
s aotNan1.NW_018496901v1     135533 107 -    486031 TGAGTTCCACAGGTTCTTGGAAAGCATCATCTGCTGTAATACAAGCATTCAGGGTCTCTGCAAACTGTTC-AATTTCAGTTTCAAAACTGCCAGTCTGCTC-----TGTAACA
i aotNan1.NW_018496901v1   I 8 C 0
s proCoq1.NW_012149775v1     385300 107 -   1411461 TGAGTTCCGCACGTTCTTGCAAAGCACTGTCTGTCGTAACCCAACCACTCAGGGTCTCTGCAAACTGTTC-AGTTTCAGTTTCAACACCGCCAGGCTGCTC-----CGTAAGA
i proCoq1.NW_012149775v1   I 164 I 481
s otoGar3.GL873550           376199  94 +  18854210 TGAGCTA--------CTTGCCTGG---TAGCTTTTGTAACCTAACCA-TCATGGTGTCCACAAACTG-------TTCAGTTTCAAAACTGCTAGACTGCTCTGCTGTGTAAGA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e canFam3.chr35            26388475  56 +  26524999 I

a score=4405469.000000
s hg38.chr6_GL000254v2_alt  1532397 432 +   4827813 TGGTTCAAGAAAC-CCTGAACAGGTACTGACAGAGTGGGATAATCCTCACCATCATCCTCATAGGATTC--------TCTATAATTA---GAATAACCTGATAGGTAAAATTTGACGGTATTCACAGACAGCTCAGACATTAATAA---AGAAGCT------ACAACCACCTAAGGTTTAACCACTGCTAACTC--AGTTCTGCTATGGGA-TTTTATCCTGTGAA-CTAGATGAAGCTCT------CAGGGCCTCGTTTGCTCCCAGACAGGCCGACCTCCTCAATGGTTCTCACGAAAGC-AAGTGTGAAAGTGAGCCAGGAGGAGACCACCAGTcttcacaatccaaggggcaccattcacatcttggtctatgaggatggcgctccttggtggttggtatgcagtgtacaacctaactgcaGGGCTGAGAGGGGGCACAATAGTGGGGCCTGTGGTGGAT
s panTro5.chr6             30402275 433 + 175400573 TGGTTCAAGAAAC-CCTGAACAGGTACTGACAGAGTGGGATAATCCTCACCATCATCCTCATAGGATTC--------TCTATAATTA---GAATAACCTGATAGGTAAAATTTGACGGTATTCGCAGACAGCTCAGACATTAATAA---AGAAGCT------ACAACCACCTAAGGTTTAACCACTGCTAACTC--AGTTCTGTTATGGGA-TTTTATCCTGTGAA-CTAGATGAAGCTCT------CAGGGCCTCGTTTGCTCCCAGATAGGCCGACCTCCTCAATGGTTCTCACAAAAGCCAAGTGTGAAATTGGGCCAGGAGGAGACCACCAGTcttcacaatccaaggggcaccatccacatcttggtctatgtggatggcgctccttggtggttggtatgcagtgtacaacctaactgcaGGGCTGAGAGGGAGCACAATAGTGGGGCCTGTGGTGGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30636565 433 + 173848474 TGGTTCAAGAAAC-CCTGAACAGGTACTGACAGAGTGGGATAATCCTCACCATCATCCTCATAGGATTC--------TCTATAATTA---GAATAACCTGATAGGTAAAATTTGACGGTATTCGCAGACAGCTCAGACATTAATAA---AGAAGCT------ACAACCACCTAAGGTTTAACCACTGCTAACTC--AGTTCTGTTATGGGA-TTTTATCCTGTGAA-CTAGATGAAGCTCT------CAGGGCCTCGTTTGCTCCCAGATAGGCCGACCTCCTCAATGGTTCTCACAAAAGCCAAGTGTGAAATTGGGCCAGGAGGAGACCACCAGTcttcacaatccaaggggcaccattcacatcttggtctatgtggatggcgctccttggtggttggtatgcagtgtacaacctaactgcaGGGCTGAGAGGGAGCACAATAGTGGGGCCTGTGGTGGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     344334 432 +   2037526 TGGTTCAAGAAAC-CCTGAACAGGTACTGACAGAGTGGGATAATCCTCACCATCATCCTCATAGGATTC--------TCTATAATTA---GAATAACCTGATAGGTAAAATTTGACGGTATTCACAGACAGCTCAGACATTAATAA---AGAAGCT------ACAACCACCTAAGGTTTAACCACTGCTAACTC--AGTTCTGCTACGGGA-TTTTATCCTGTGAA-CTAGATGAAGCTCT------CAGGGCCTTGTTTGCTCCCAGACAGGCCGACCTCCTCAATGGTTCTCACGAAAGC-AAGTGTGAAAGTGGGCCAGGAGGAGACCACCAGTcttcacaatccaaggggcaccattcacatcttggtctatgtggatggcgctccttggtggttggtatgcagtgtacaacctaactgcaGGGCTGAGAGGGAGCACAATAGTGGGGCCTGTGGTGGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75007615 432 + 122973662 TGGTTCAAGAAAC-CCTGAACATGTGCTGACAGAGTGGGATAATCCTCACCATCATCCTCGTAGGATTC--------TCTATAATTA---GAATAACCTGATAGGTAAAATTCGACGGTATTCACAGACAGCTCAGACATTAATAA---AGAAGCT------ACAACCACCTAAGGTTTAACCACTGCTAACTC--AGTTCTGCTATGGGA-TTTTATCCTGTGAA-CTAGATGGAGCTCT------CAGGGCCTCGTTTGCTCCCAGACAGGCTGACCTCCGCAATGGTTCTCATGAAAGC-AAGTGTGAAAGTGGACCAGGAGGAGACCATCAGTcttcacaatccaaggggcaccattcacatctcagtctatgcggatggtgctccttggtggttggtatgcagtgtacaacctaactgcaGGGCTGAGAGGGAGCACAGTAGTGGGGCCTGTGGTGGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30897808 430 + 172585720 TGGTTCAAGAAAC-CCTGAACATGTACTG--AGAGTGGGATAATCCTCACCGTCATCCTCATAGGATTC--------TCTATAATTA---GAATCACCTGATGGGTAGAATTTGATGGTATTCACAGACAGCTCAGACATTAATAA---AGAAGCT------ACAACCACCTAAGGTTTAACCACTGCTAACTC--AGTTCTGCTGTGGGA-TTTTATCCTGTGAA-CTAGATGGAGCTCT------CAGGGCCTCGTTTGCTCCCAGACAGTTCGACCTCCTCAGTGGTTCTCAGGAAAGC-AAGTGTGAAAGTGGGCCAGGAGGAGACCACCAGTCCTcacaatccaaggggcaccactcccatcttggtctatgtggatggtgctctttggtggttggtatgcagtgtacaacctaactgcaGGGCTGAGAGGAAGCACAGTAGTGGGGCCTCTGGTGGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30187382 430 - 170955103 TGGTTCAAGAAAC-CCTGAACATGTACTG--AGAGTGGGATAATCCTCACCGTCATCCTCATAGGATTC--------TCTATAATTA---GAATCACCTGACGGGTAGAATTTGATGGTATTCACAGACAGCTCAGACATTAATAA---AGAAGCT------ACAACCACCTAAGGTTTAACCACTGCTAACTC--AGTTCTGCTGTGGGA-TTTTATCCTGTGAA-CTAGATGGAGCTCT------CAGGGCCTCGTTTGCTCCCAGACAGTTCGACCTCCTCAGTGGTTCTCAGGAAAGC-AAGTGTGAAAGTGGGCCAGGAGGAGACCACCAGTCCTcacaatccaaggggcaccactcccatcttggtctatgtggatggtgctctttggtggttggtatgcagtgtacaacctAACTGCAGGGCTGAGAGGAAGCACAGTAGTGGGGCCTCTGGTGGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     436235 438 +   1495729 TGGTTCAAGAAAC-CCTGAACATGTACTG--AGAGTGGGATAATCCTCACCGTCATCCTCATAGGATTCTCTATAATTCTATAATTA---GAATCACCTGATGGGTAGAATTTGATGGTATTCACAGACAGCTCAGACATTAATAA---AGAAGCT------ACAACCACCTAAGGTTTAACCACTGCTAACTC--AGTTCTGCTGTGGGA-TTTTATCCTGTGAA-CTAGATGGAGCTCT------CAGGGCCTCGTTTGCTCCCAGACAGTTCGACCTCCTCAGTGGTTCTCAGGAAAGC-AAGTGTGAAAGTGGGCCAGGAGGAGACCACCAGTCCTcacaatccaaggggcaccactcccatcttggtctatgtggatggtgctctttggtggttggtatgcagtgtacaacctaactgcaGGGCTGAGAGGAAGCACAGTAGTGGGGCCTCTGGTGGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     539880 428 -    863181 TGGTTCAAGAAAC-CCTGAACATGTACTG--AGAGTGGGATAATCCTCACCGTCATCCTC--AGGATTC--------TCTATAATTA---GAATCACCTGACGGGTAGAATTTGATGGTATTCACAGACAGCTCAGACATTAATAA---AGAAGCT------ACAACCACCTAAGGTTTAACCACTGCTAACTC--AGTTCTGCTGTGGGA-TTTTATCCTGTGAA-CTAGATGGAGCTCT------CAGGGCCTCGTTTGCTCCCAGACAGTTCGACCTCCTCAGTGGTTCTCAGGAATGC-AAGTGTGAAAGTGGGCCAGGAGGAGACCACCAGTCCTcacaatccaaggggcaccactcccatcttggtctatgtggatggtgctctttggtggttggtatgcagtgtacaacctaactgcaGGGCTGAGAGGAAGCACAGTAGTGGGGCCTCTGGTGGAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29686605 430 -  71996105 TGGTTCAAGAAAC-CCTGAACATGTACTG--AGAGTGGGATAATCCTCATCGTCATCCTCATAGGATTC--------TCTATAATTA---GAATCACCTGACGGGTAGAATTTGATGGTATTCACAGACAGCTCAGATATTAATAA---AGAAGCT------ACAACCACCTAAGGTTTAACCACTGCTAACTC--AGTTCTGCTGTGGGA-TTTTATCCTGTGAA-CTAGAGGGAGCTCT------CAGGGCCTCGTTTGCTCCCAGACAGTTCGACCTCCTCAGTGGTTCTCAGGAAAGC-AAGTGTGAAAGTGGGCCAGGAGGAGACCACCAGTCCTcgcaatccaaggggcaccactcccatcttggtctatgcggatggtgctccttggtagttggtatgcagtgtacaacctaactgcaGGGCTGAGAGGAAGCACAGTAGTGGGGCCTCTGGTGGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     422106 438 -    735854 TGGTTCAAGAAAC-CCTGAACATGTACTG--AGAGTGGGATAATCCTCACCGTCATCCTCATAGGATTCTCTATAATTCTATAATTA---GAATCACCTGATGGGTAGAATTTGATGGTATTCACAGACAGCTCAGACATTAATAA---AGAAGCT------ACAACCACCTAAGGTTTAACCACTGCTAACTC--AGTTCTGCTGTGGGA-TTTTATCCTGTGAA-CTAGATGGAGCTCT------CAGGGCCTCGTTTGCTCCCAGACAGTTCGACCTCCTCAGTGGTTCTCAGGAAAGC-AAGTGTGAAAGTGGGCCAGGAGGAGACCACCAGTCCTcacaatccaaggggcaccactcccatcttggtctatgtggatggtgctctttggtggttggtatgcagtgtacaacctaactgcaGGGCTGAGAGGAAGCACAGTAGTGGGGCCTCTGGTGGAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     328666 430 -   1829203 TGGTTCAAGAAAC-CCTGAACATGTACTGACAGAGTGGGATAATCCTCACCATCATCCTCATAGGATTC--------TCTATAATTA---GAATAACCTGATGGGTAGAATTTGACGGTATTCACAGACAGCTTAGACATTATTAA---AGAAGCT------ACAACCACTTAAGGTTTAACCACTGCTAACTC--AGTTCTGCTGTGGGA-TTTTATCCTGTGAA-CTAGATGGAGCGCT------CAGGGCCTCGTTTGCTTGCAGACAGTTCGACATCCTCAGTGGTTCTCAGGAAAGC-AAGTGTGAAAGTGGGCCAGGAGGAGACCACCAGTC--cacaatccaaggggcaccactcacatcttggtctatgcggatggtgctccttggtggttggtatgcagtgtacaaactaactgcaGGGCTGAGAGGAAGCACACTAGTGGGGCCTCTGGTGGAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30517396 414 + 171630274 TGGTTTGAGAAAC-CTTGAACATATTCTGACAGA----GATAATCCTCACCATCATCCTCATAGGATAC--------TCTATAATTA---GAATAACCTGATGGGTAAAACTCAATGGTATTCACAGACAGCTGAGATGTTAATAA---AGAAGCT------ACAACCACGTGGGGTTTAATCACTGCTGACTC--AGTTCTGCTATGAAATTTTTATTCTGTGAA-CTAGACGGAACTCT------CAGGGCCTCGTTTGCCCCCAGACAGCCCAA-----------GTTCTCAGAAAAGC-AAGTGTGAAAGTGGGCCAGGAGGAACCCACCAGTcttcacaatcgaaggggcaccattcacatcttggtctatgtggatggcgctccttgg----tagtatgcagtgtacaacctaactgcaGGGCTGACAGGGAGCACAGTAGTGACGCCTGTGGCAGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           321296 430 +    515838 TGGTTCAAGAAAC-CCTGAACATATTCTGACAGA----TATAATCCTCACCATCATCCTCATAGGATAC--------TCTATAATTA---GAATAACCTGATGGGTAAAACTCAATGGTATTCACAGACAGCTGAGACATTAAT-A---AGAAGCT------ACAACCACCTGGGGCTTAATCATTGCTGACTC--AGTTCTGCTGTGGGATTTTTATCCTGTGAA-CTAGATGGAACTCTAGTTCACAGGGCCTCGTTTGCCCCCCAACAGCCCAACCTTCTCAATGGTTCTCAGGAAAGC-AAGTGTGAAAGTGGGCCAGGAGGAACCCACCAGTcttcacagtcaaaggggcaccattcacatcttggtctatgtggatggcgctccttgg----tggtatgcagtgtacgacctaactgcaGGGCTGACAGGGAGCACAGTGGTGGGGCCTGTGGCAGAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     951782 425 -   1771730 TGGTTCGAGAAAC-CCTGAACATATTCTGACAGA----GATAATCCTAACCATCATCCTCATAGGATAC--------TCTATAATTT---GAATAACCTGATGGGTAAAACTCAATGGTATTCACAGACAGCTGAGACATTAATAA---AGAAGCT------ACAACCACCTGGGGTTTAATCACTGCTGACTC--AGTTCTGCTGTGGGATTTTTATACTGTGAA-CTAGATGGAACTCT------CAGGGCCTTGTTTGCCCCCAGACAGCCCAACCTCTTCAGTGGTTCTCAGGAAAGC-AAGTGTGAAAGTGGGCCAGAAGGAACCCACCAGTcttcacagtcaaagaggcaccattcacatcttggtctatgcggatggcgtttcttgg----tggtatgcagtgtacaatctaactgcaGGGCTGACAGGGAGCACAGTAGTGGGGCCTGTGGCAGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     135640 424 -    486031 TGGTTCGAGAAAC-CCTGAACATATTCTGACAGA----GATAATCCTCACCATCATCCTCATAGGATAC--------TCTATAATTA---GAATAACCTGATGGGTAAAACTTAATGGTATTCACAGACAGCTGAGACAATAATAA---AGAAGCT------ACAACCACCTGGGGTTTAATCACTGCTGACTC--AGTTCTGCTGTGGGATTTTTATTCTGTGAA-CTAGATGGAACTCT------CAGGGCCTCGTTTGCCCCCAGACAGCCCGACCTCCTCAATGGTTGCCAGGAAAGC--AGTGTGAAAGTGGGCCAGGAGGAACCCACCAGTcttcacagtcaaaggggcaccattcacatcttggtctatgtggatggcgctccttgg----tggtatgcagtgtacaacctaactgcaGGGCTGACAGGGAGCACAGCAGTGGGGCCTGTGGCAGAT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           376293 375 +  18854210 CAATTCAAAAAACTCTTGAACACATTCCAATAGAACAGTATAATCCTCACAACCACCCTAATAGAATTC--------TGTATAATTAGAGGAATACCTTGATACATAATATTCTGGGGGATTCACAGATAGCTCAGACATTATTAATACAGGGGCTATAACCACAACCACCTACGGTTTAGCCATTGCTGACTCCAAGTTCTGCTGTAAGA-TTTTATCATGTGAACCTAGGTGGAGTTCT------CAGGG-------------------GCTGGACCCACTCCATAATTCTCAG---ATC-AAGTGTGAGAGTGGACTGGTAGGACACCACCAGTctccacaatccaaggggtgccattcacatcttggtctatatgaatggtgcccctgag----tgatatacaataaacaacc-----------------------------------------------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58129895 141 -  94987271 I
e proCoq1.NW_012149775v1     385407 481 -   1411461 I
e canFam3.chr35            26388475  56 +  26524999 I

a score=701650.000000
s hg38.chr6_GL000254v2_alt  1532829 63 +   4827813 ATGGCCTCTGGTCTTAGGTTGCCCCTGCTGTTTGCTCTGAATATAGGAGCCATGCAGCCAGGA
s panTro5.chr6             30402708 63 + 175400573 ATGGCCTCTGGTCTTAGGTTGCCCCTGCTGTTTGCTCTGAATATAGGAGCCATGCAGCCAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30636998 63 + 173848474 ATGGCCTCTGGTCTTAGGTTGCCCCTGCTGTTTGCTCTGAATATAGGAGCCATGCAGCCAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     344766 63 +   2037526 ATGGCCTCTGGTCTTCGGTTGCCCCTGCTGTTTGCTCTGAATATAGGAGCCATGCAGCCAGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75008047 63 + 122973662 ATGGCCTCTGGCCTTAGGTTGCCCCTGCTTTTTGCTCTGAATATAGGAGCCATGCAGCCAGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30898238 63 + 172585720 ATGGCCTCTGGCTTTAGGTTGCCCCTGCTGTTTGCTCTGAATATAGGAGCCATGCAGACAGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30187812 63 - 170955103 ATGGCCTCTGGCCTTAGGTTGCCCCTGCTGTTTGCTCTGAATATAGGAGCCATGCAGACAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     436673 63 +   1495729 ATGGCCTCTGGCCTTAGGTTGCCCCTGCTGTTTGCTCTGAACATAGGAGCCATGCAGACAGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     540308 63 -    863181 ATGGCCTCTGGCCTTAGGTTGCCCCTGCTGTTTGCTCTGAATATAGCAGCCATGCAGACAGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29687035 63 -  71996105 ATGGCCTCTGGCCTTAGGTTGCCCCTGCTGTTTGCTCTGAATATAGGAGCCATGCAGACAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     422544 63 -    735854 ATGGCCTCTGGCCTTAGGTTGCCCCTGCTGTTTGCTCTGAACATAGGAGCCATGCAGATAGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     329096 63 -   1829203 ATGGCCTCTGCCCTTAGGTTGCCCCTGCTGTTTGCTCTGAACATAGGAGCCATGCAGACAGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30517810 63 + 171630274 ACAGCCTATGGCCTTAGGTTGCCCCCGCTGTTTGCTCTGAATACACGAGCCATGCAGCCAGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           321726 63 +    515838 ACAGCCTCTGGCCTTAGGTTGCCCCTGCTGTTTGCTCTGAATACACGAGCCCTGCAGCCAGGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     952207 63 -   1771730 ACAGCCTCTGGCCTTAGGTTGCCCCTGCTGTTTCCTCTGAATACATGAGCCATGCAGCCAGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     136064 63 -    486031 ACAGCCTCTGGCCTTAGGTTGCCCCTGCTGTTTGCTCCAAATACATGAGCCGTGCAGCCAGGA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           376668 50 +  18854210 -------------tTAGGCTACCACTTCTGTTTGCTCAGAATGTAGGAGCCATGAGGCCAGGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58130036 43 -  94987271 ATGATCTCTGGCCTCGGGCTGCCACTGCTGTTTGCTCTCATAA--------------------
i mm10.chr17               I 141 C 0
e micMur3.chr6               428372 741 + 123392446 I
e proCoq1.NW_012149775v1     385407 481 -   1411461 I
e canFam3.chr35            26388475 56 +  26524999 I

a score=600585.000000
s hg38.chr6_GL000254v2_alt  1532892 52 +   4827813 AGATGAGAGAAAGCTCGGCC----ACAGGAAAAGGAC----TGGTGGTAGGA-CCTGTGAG
s panTro5.chr6             30402771 52 + 175400573 AGATGAGAGAAAGCTTAGCC----ACAGGAAAAGGAC----TGGTGGTAGGA-CCTGTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30637061 52 + 173848474 AGATGAGAGAAAGCTTAGCC----ACAGGAAAAGGAC----TGGTGGTAGGA-CCTGTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     344829 52 +   2037526 AGATGAGAGAAAGCTCGGCC----ACAGGAAAAGGAC----TGGTGGTAGGA-CCTGTGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75008110 52 + 122973662 AGATGAGAGAAAGCTCGGCC----ACAGGAAAAGGAC----TGGTGGTAGGA-CCTGTAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30898301 52 + 172585720 AGATGAGAGAAAGCTCAACC----ACAGGAAAAGGAC----TGGTGATAGGA-CCTGTGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30187875 52 - 170955103 AGATGAGAGAAAGCTCAACC----ACAGGAAAAGGAC----TGGTGATAGGA-CCTGTGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     436736 52 +   1495729 AGATGAGAGAAAGCTCAACC----ACAGGAAAAGGAC----TGGTGGTAGGA-CCTGTGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     540371 52 -    863181 AGATGAGAGAAAGCTCAACC----ACAGGAAAAGGAC----TGGTGATAGGA-CCTGTGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29687098 52 -  71996105 AGATGAGAGAAAGCTCAACC----ACAGGAAAAGGAC----TGGTGGTAGGA-CCTGTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     422607 52 -    735854 AGATGAGAGAAAGCTCAACC----ACAGGAAAAGGAC----TGGTGGTAGGA-CCTGTGAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     329159 52 -   1829203 AGATGAGAGAAAGCTCGGCC----ACAGGAAAAGGAC----TGGTGGTGGGA-CCTGTGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30517873 49 + 171630274 AAAT--GAGAAAGCTCAGCC----CAGGGGAAAGGAC----TGGTGGTAGGATCC--TGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           321789 53 +    515838 AAATGAGAGAAAGCTCAGCC----CCGGGGAAAGGAC----TGGTGGTAGGAACCTGTGAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     952270 53 -   1771730 AAATGAGAGAAAGCTCAGCC----CCGGGGAAAGGAC----TGGTGGTAGGAACCTGTGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     136127 53 -    486031 AAATGAGAGAAAGCTCAGCC----CCAAGGAAAGGAC----TGGTGGTAGGAACCTGTGAG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     385888 52 -   1411461 AGATGAGAGGAAGCTCGGTT----ACAGGGAAAGGAC----TGGTGGTACGA-CCTGTGAG
i proCoq1.NW_012149775v1   I 481 I 193
s otoGar3.GL873550           376718 56 +  18854210 AAATGAGAGGAAGCTCAAGTACAGACAGGGAAAGGGC----TGGTGGTAGGA-CCCACGAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58130079 38 -  94987271 ----------------GGTC----TCATAAGAAGCACCTTATGGTG-TGTGA-CCTGTGA-
i mm10.chr17               C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e canFam3.chr35            26388475 56 +  26524999 I

a score=72084.000000
s hg38.chr6_GL000254v2_alt  1532944 9 +   4827813 GATAGGAAA
s panTro5.chr6             30402823 9 + 175400573 GATAGGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30637113 9 + 173848474 GATAGGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     344881 9 +   2037526 GATAGGAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75008162 9 + 122973662 GATAGGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30898353 9 + 172585720 AATAGGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30187927 9 - 170955103 AATAGGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     436788 9 +   1495729 AATAGGAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     540423 9 -    863181 AATAGGAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29687150 9 -  71996105 AATAGGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     422659 9 -    735854 AATAGGAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     329211 9 -   1829203 GATAGGAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30517922 9 + 171630274 GACCAGAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           321842 9 +    515838 GACCGGAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     952323 9 -   1771730 GACCGGAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     136180 9 -    486031 GACCGGAAA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           376774 3 +  18854210 ------GAT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58130117 0 -  94987271 C
e proCoq1.NW_012149775v1     385940 193 -   1411461 I
e canFam3.chr35            26388475 56 +  26524999 I

a score=2123109.000000
s hg38.chr6_GL000254v2_alt  1532953 217 +   4827813 AAGAAAAGCAAACACAGGGCAGAGAAGGATCAGACTAGCAAGCAGAGGCCTCTA------CTGCAGACTAAAGAGTAGGCTGATTAGAA--AGTGCAAAGAGGGAGGGGGGCTTCTATTGTGCAGCTGGGAAATTCTTCCTGTTGCAAAAGGGG-----CTACC--------------------------------------------------TGGGGGAAAAGTGAGCAGTC-AGAATCT--------CTGCAGGCGGAGTTTTCTATATTTGATGTACATCTGGGA
s panTro5.chr6             30402832 217 + 175400573 AAGAAAAGCAAACACAGGGCAGAGAAGGATCAGACTAGCAAGCAGAGGCCTCTA------CTGCAGACTAAAGAGTAGGCTGATTAGAA--AGTGCAAAGAGGGAGGGGGGCTTCTATTGTGCAGCTGGGAAATTCTTCCTGTTGCAAAAGGGG-----CTACC--------------------------------------------------TGGGGGAAAACTGAGCAGTC-AGAATCT--------CTGCAGGCGGAGTTTTCTATATTTGATGTACATCTGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30637122 217 + 173848474 AAGAAAAGCAAACACAGGGCAGAGAAGGATCAGACTAGCAAGCAGAGGCCTCTA------CTGCAGACTAAAGAGTAGGCTGATTAGAA--AGTGCAAAGAGGGAGGGGGGCTTCTATTGTGCAGCTGGGAAATTCTTCCTGTTGCAAAAGGGG-----CTACC--------------------------------------------------TGGGGGAAAACTGAGCAGTC-AGAATCT--------CTGCAGGCGGAGTTTTCTATATTTGATGTACATCTGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     344890 217 +   2037526 AAGAAAAGCAAACACAGGGCAAAGAAGGATCAGACTAGCAAGCAGAGGCCTCTA------CTGCAGACTAAAGAGTAGGCTGATTAGAA--AGTGCAAAGAGGGAGGGGGGCTTCTATTGTGCAGCTGGGAAATTCTTCCTGATGCAAAAGAGG-----CTGCC--------------------------------------------------TGGGGGAAAACTGAGCAGTC-AGAATCT--------CTGCAGGCGGAGTTTCCTATATTTGATGTACATCTGGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75008171 217 + 122973662 AAGAAAAGCAAACACAGGGCAGAGAAGGATCAGACTAGCAAGCAGAGGCCTCTA------CTGCAGACTAAAGAGTAGGCTGATTAGAA--AGTGCAAAAAGAGAGGGGGGCTTCTACCGTGCAGCTGGGAAATTCTTCCTGTTGCAAAAGGGG-----CTATC--------------------------------------------------TGGGGGAAAACTGGGCAGTC-AGAATCT--------CTGCAGGCGGAGTTTTCTATATTTGATGTACATCTGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30898362 214 + 172585720 AGGAAAAGCAAACACAGGGTAGAGAAGGGTCAGACTAGCAAGCAGAGGCCT---------CAGTAGACTAAAGAGTAGGCCGATTAGAA--AGTGCAAGGAGGGAGGGGGGCTTCTACTGTGCAGCTGGGAAATTCTTCCTGTTGCAAAAGGGG-----CTACC--------------------------------------------------TGGGGAAAAAGTGGGCAGTC-AGAATCT--------CTGCAGGCAGAGTTTTCTATATTTGATGTACATCTGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30187936 214 - 170955103 AGGAAAAGCAAACACAGGGTAGAGAAGGGTCAGACTAGCAAGCAGAGGCCT---------CAGTAGACTAAAGAGTAGGCCGATTAGAA--AGTGCAAGGAGGGAGGGGGGCTTCTACTGTGCAGCTGGGAAATTCTTCCTGTTGCAAAAGGGG-----CTACC--------------------------------------------------TGGGGAAAAAGTGGGCAGTC-AGAATCT--------CTGCAGGCAGAGTTTTCTATATTTGATGTACATCTGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     436797 214 +   1495729 AGGAAAAGCAAACACAGGGTAGAGAAGGGTCAGACTAGCAAGCAGAGGCCT---------CAGTAGACTAAAGAGTAGGCCGATTAGAA--AGTGCAAGGAGGGAGGGGGGCTTCTACTGTGCAGCTGGGAAATTCTTCCTGTTGCAAAAGGGG-----CTACC--------------------------------------------------TGGGGAAAAAGTGGGCAGTC-AGAATCT--------CTGCAGGCAGAGTTTTCTATATTTGATGTACATCTGGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     540432 214 -    863181 AGGAAAAGCAAACACAGGGTAGAGAAGGGTCAGACTAGCAAGCAGAGGCCT---------CAGTAGACTAAAGAGTAGGCCGATTAGAA--AGTGCAAGGAGGGAGGGGGGCTTCTACTGTGCAGCTGGGAAATTCTTCCTGTTGCAAAAGGGG-----CTACC--------------------------------------------------TGGGGAAAAAGTGGGCAGTC-AGAATCT--------CTGCAGGCAGAGTTTTCTATATTTGATGTACATCTGGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29687159 214 -  71996105 AGGAAAAGCAAACACAGGGTAGAGAAGGGTCAGACTAGCAAGCAGAGGCCT---------CAGTAGACTAAAGAGTAGGCCGATTAGAA--AGTGCAAGGAGGGAGGGGGGCTTCTACTGTGCAGCTGGGAAATTCTTCCTGTTGCAAAAGGGG-----CTACC--------------------------------------------------TGGGGAAAAAGTGGGCAGTC-AGAATCT--------CTGCAGGCAGAGTTTTCTATATTTGATGTACATCTGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     422668 214 -    735854 AGGAAAAGCAAACACAGGGTAGAGAAGGGTCAGACTAGCAAGCAGAGGCCT---------CAGTAGACTAAAGAGTAGGCCGATTAGAA--AGTGCAAGGAGGGAGGGGGGCTTCTACTGTGCAGCTGGGAAATTCTTCCTGTTGCAAAAGGGG-----CTACC--------------------------------------------------TGGGGAAAAAGTGGGCAGTC-AGAATCT--------CTGCAGGCAGAGTTTTCTATATTTGATGTACATCTGGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     329220 214 -   1829203 AGTAAAAGCAAACACAGGGCAGAGAAGGGTCAGACTAGCAAGCAGAGGCCT---------CAGTAGACTAAAGAGTAGGCCGATTAGAA--AGTGCAAGGAGGGAGGGGGGGTTCTACCCTGCAGCTGGGAAATTCTTCCTGTTGCAAAAGGGG-----CTACC--------------------------------------------------TGGGGAAAAAGGGGGCAGTC-AGAATCT--------CTGCAGGCAGAGTTTTCCATATTTGATGTACATCTGGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30517931 182 + 171630274 AGGAAAAGCAAATGCAGGGCAGAGAAGAATCAGACTAGCAAACAGAGGCCTCTA------CTGCAGACTAAAGAGTAGACAGACCAGAA--AGTGCAAGGAGGGAGGGGGGCTTCTACTTTGCAACTGGGA-----------------------------------------------------------------------------------------AAAACAGGGCAGTCAAGAG--T--------CTGCAGGCAGAGTTTTCCATATTTGACATACATCTGGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           321851 200 +    515838 AGGAAAAGCAAATGCAGGGCAGAGAAGAATCAGACTAGCAAGCAGAGGCCTCTA------CTGCAGACTAAAGAGTAGACAGACTAGAA--AGTGCAAGGAGGGAGAGGGGCTTCTACTTTGCAAATGGGAAATTCTTCCTGTTGCAAAAGGAA-----CTACC--------------------------------------------------TGGGGGAAAACAGGGCAGTC--------------------------AGTTTTCCATATTTGACATACATCTGGGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     952332 215 -   1771730 AGGAAAAGCAAACGCAGGGCAGAGAAGAATCAGACTAGCAAGCAGAGGCCTCTA------CTGCAGACTAAAGAGTAGAGAGACCAGAA--AGTGCAATGAGGGAGGGGGGCTTCTACTTTGCAACTGGGAAATTCTTCCTGTTGCAAAAGGGA-----CTACC--------------------------------------------------TGGGGAAAAACAGGGCAGTC-AGAG--T--------CTGTAGGCAGAGTTTTCCATATTTGACGTACATCTGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     136189 215 -    486031 AGGAAAAGCAAACGCGGGGCAGAGAAGAATCAGACTAGCAAGCAGGGGCCTCTA------CTGCAGACTAAAGAGTAGACAGACCAGAA--AGTGCAAGGAGGGAGGGGGGCTTCTACTTTGCAACTGGGAAATTCTTCCTGTTGCAAAAGGGA-----CTACC--------------------------------------------------TGGGGAAAAACAGGGCAGTC-AGAG--T--------CTGCAGGCGGAGTTTTCCATATTTGATGTACATCTGGGA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           376777 207 +  18854210 AGAATAACCAGACACAGGGCAGAGAAGGGTCAGACTAGCAAGAGGAGATCTCTA------TTCCAAACTAAAGAGTAGACTGAACAGAA--AATGCAAGGAGGGAG-GGAGCTTCTGGTTTGCAGATGGAAAATTCTTCCTGGTACAAAAGGGG-----CTCTC--------------------------------------------------TGGGAGCCAGG-GAGGAATG-AGGG----------------GAGGGAATTTTCTGTATTTGATATACTTATGGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58130117 113 -  94987271 -------------------CCTCAAAGGCTCAG--CAGTA--------------------CTGCAGACTACACGGGAGACTGATCTGAAATAATGTAAGGGGGTGGGGCCGCCT-----------ATGGGCAGTTC---------CAGTGAGGA-----TTCCA--------------------------------------------------CAGGGTAAAATGGGA------------------------------------------------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26388531 253 +  26524999 AGGCAGAGGGGACACGGTGCAGAGGGGCATCAGAGCATGAAGCAGAGGCATCTGGGCAACCTGCAGACCC---------------------AGTG----------GAGGGGCCCCAGGTCTGCAGCTGAGAAATCT---CTGCTGCATAAGGGAAGGGTCTCCCTGGGAGCTGTGGGGGGCCATGGGGGACAGTGGCTGGGTCATGGGGGCCTGTGGGGGGCCATAGGGCTGTG-GGAAGTCATAGGGGGCTAGGGGGAGGGCGTTCTTCATCACAGGTGGATAGGGA-
i canFam3.chr35            I 56 C 0
e micMur3.chr6               428372 741 + 123392446 I
e proCoq1.NW_012149775v1     385940 193 -   1411461 I

a score=2383975.000000
s hg38.chr6_GL000254v2_alt  1533170 187 +   4827813 AACACCCTCTAGACACTCACCTGTCTTATATTCCAAGTCTCTCAGCAGCTTCCCTGGGGAG-AA-AAAAG------GACAGCAATGA--CTCA-AGTCCCGAAAATTTATGAGCCCATTTCTTGCTCGGGCAGTATCAATTTCCTGATAGGGATCCATGTCTAAGA---------------CAAGAGGCCC--TCAGAAGAGTGAGGATCGACAA
s panTro5.chr6             30403049 187 + 175400573 AACACCCTCTAGACACTCACCTGTCTTATATTCCAAGTCTCTCAGCAGCTTCCCTGGGGAG-AA-AAAAG------GACAGCAATGA--CTCA-AGTCCCGAAAATTTATGAGCCCATTTCTTGCTCGGGCAGTATCAATTTCCTGATAGGGATCCATGTCTAAGA---------------CAAGAGGCCC--TCAGAAGAGTGAGGCTCGACAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30637339 188 + 173848474 AACACCCTCTAGACACTCACCTGTCTTATATTCCAAGTCTCTCAGCAGCTTCCCTGGGGAGAAA-AAAAG------GACAGCAATGA--CTCA-AGTCCCGAAAATTTATGAGCCCATTTCTTGCTCGGGCAGTATCAATTTCCTGATAGGGATCCATGTCTAAGA---------------CAAGAGGCCC--TCAGAAGAGTGAGGCTCGACAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     345107 187 +   2037526 AACACCCTCTAGACACTCACCTGTCTTATATTCCAAGTCTCTCAGCAGCTTCCCTGGGGAG-AA-AAAAG------GACAGCAATGA--CTCA-AGTCCCGAAAACTTATGAGCCCATTTCTTGCTCGGGCAGTATCAATTTCCTGATAGGGATCCATGTCTAAGA---------------CAAGAGGCCC--TCAGAAGAGTGAGGCTCGACAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75008388 187 + 122973662 AACACCCTCTAGACACTCACCTGTCTTATATTCCAAGTCTCTCAGCAGCTTCCCTGGGGAG-AA-AAAAG------GACAGCAATGA--CTCA-AGTCCCGCAAATTTATGAGCCCATTTCTTGCTCAGGCGGTATCAATTTCCTGATAGGGATCCATGTCTAAGA---------------CAGGAGGCCC--TCAGAAGAGTGAGGCTCGACGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30898576 187 + 172585720 ACCACCCGCTCGACACTCACCTGTCTTATATTCCAAGTCTCTCAGCAGCTTCCCTGGGGAG-AA-AAAAG------GACAGCAATGA--CTCA-AGTCCCACAAATGCACGGGCCCATTTCTTGCTTGGGCGGTATCAATTTCCTGACAGGGATCCATTTCTAAGG---------------CAGGAGGCCC--TCAGAAGAGTGAGACTCGACAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30188150 187 - 170955103 ACCACCCGCTCGACACTCACCTGTCTTATATTCCAAGTCTCTCAGCAGCTTCCCTGGGGAG-AA-AAAAG------GACAGCAATGA--CTCA-AGTCCCACAAATGCACGAGCCCATTTCTTGCTTGGGCGGTATCAATTTCCTGACAGGGATCCATTTCTAAGG---------------CAGGAGGCCC--TCAGAAGAGTGAGACTCGACAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     437011 187 +   1495729 ACCACCCGCTCGACACTCACCTGTCTTATATTCCAAGTCTCTCAGCAGCTTCCCTGGGGAG-AA-AAAAG------GACAGCAATGA--CTCA-AGTCCCGCAAATGCACGAGCCCATTTCTTGCTTGGGCGGTATCAATTTCCTGACAGGGATCCATTTCTAAGG---------------CAGGAGGCCC--TCAGAAGAGTGAGACTCGACAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     540646 187 -    863181 ACCACCCTCTCGACACTCACCTGTCTTATATTCCAAGTCTCTCAGCAGCTTCCCTGGGGAG-AA-AAAAG------GACAGCAATGA--CTCA-AGTCCCGCAAATGCACGAGCCCATTTCTTGCTGGGGCGGTATCAATTTCCTGATAGGGATCCATTTCTAAGG---------------CAGGAGGCCC--TCAGAAGAGTGAGACTCGACAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29687373 187 -  71996105 ACCACCCTCTAGACACTCACCTGTCTTATATTCCAAGTCTCTCAGCAGCTTCCCTGGGGAG-AA-AAAAG------GACAGCAATGA--CTCA-AGTCCCGCAAATGCACGAGCCCATTTCTTGCCTGGGCGGTATCAATTTCCTGACAGGGATCCATTTCTAAGG---------------CAGGAGGCCC--TCAGAAGAGTGAGACTCGACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     422882 187 -    735854 ACCACCCTCTCGACACTCACCTGTCTTATATTCCAAGTCTCTCAGCAGCTTCCCTGGGGAG-AA-AAAAG------GACAGCAATGA--CTCA-AGTCCCGCAAATGCACGAGCCCATTTCTTGCTTGGGCGGTATCAATTTCCTGATAGGGATCCATTTCTAAGG---------------CAGGAGGCCC--TCAGAAGAGTGAGACTCGACAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     329434 187 -   1829203 ACCACCCTCTCGACACTCACCTGTTTTATATTCCAAGTCTCTCAGCAGTTTCCCTGGGGAG-AA-AAAAG------GACAGCAATGA--CTCA-AGTCCCGCAAATGCATGAGCCCATTTCTTGCTTGGGCGGTATCAATTTCCTGATAGGGATCCATTTCTAAGG---------------CAGGAGGCCC--TCAGAAGAGTGAGACTCGACAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30518113 194 + 171630274 AACACCCTCTAGAAACTCACCTGTCTTATATTCCAAGTCTCTCAGCAGCTTCCCTGGGGAGAAA-AAAAG------GACAGCAATGA--CTCA-AGTCCCACAAATATATGAGCCCATTTCTTGCTCAGGCGGTATCAACTTCCTG-TAGGGATCCATCTCCAAGACAACA--------ATCAGGAGGCCC--TCAGCAGAGTGAGGCTTGAGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           322051 194 +    515838 AACACCCCCTAGATACTCACCTGTCTTATATTCCAAGTCTCTCAGCAGCTTCCCTGGGGAG-AA-AAAAG------GACAGCAATGA--CTCA-AGTCCCACAAATTTATGAGCCCATTTCTTGCTCAGGTGGTATCAACTTCCTGATAGGGATCCATCTCCAAGATAACA--------ACCAGGAGGCCC--TCAGCAGAGTGAGGCTTGAGAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     952547 194 -   1771730 AACACCCTCTAGATACTCACCTGTCTTATATTCCAAGTCTCTCAGCAGCTTCCCTGGGGAA-GA-AAAAG------GACAGCAATGA--CTCA-AGTCCCACAAATTTATGAGCCCATTTGTTACTCGGGCGGTATCAACTTCCTGACAGGGATCCATCTCCAAGACAACA--------ACCAGGAGGCCC--TCAGCAGAGTGAGGCTTGAGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     136404 194 -    486031 AACACCCTCTAGATACTCACCTGTCTTATATTCCAAGTCTCTCAGCAGCTTCCCTGGGGAG-AA-AAAAG------GAGAGCAATCA--CTCA-AGTCCCACATATTTATGAGCCCATTTCTTGCTCGGGCGGTATCAACTTCCTGATAGGGATCCATCTCCAAGACAACA--------ACCAGGAGGCCC--TCAGCAGAGTGAGGCTTGAGAA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     386133 196 -   1411461 AACACCCTTTGGACACTCACCTGTCTTATATTCCAAGTCTCTCAGCAGCTTCCCTGAGGAG-AA-CAAAG------GACAAAAATGACCCTCA-AGCCCAGAAAATCTGTGGGCCCATTTCTTCCTCAGGCAGTATTGATTTCCTGACAGGGCTCCATCCCCACGACAATA--------AGCAGGAGACCC--TCAGAAGAGTGAGGCTGGAGAA
i proCoq1.NW_012149775v1   I 193 I 14
s otoGar3.GL873550           376984 189 +  18854210 ACGACCCTTTGGACACTCACCTGTCTTATATTCCAAGTCTCTCAGCAGCTTCCCTGAGGAG-AA-CAAAG------GACAGCAATGACCCTCA-AGCCCAGAAAATTAATGGGCCCATTTCTTTCTCAGGTGGTATTAATTTCCTGATAGGGCTCTGTCCCCCAGACAACA-----------AAAAAACCC--TCTGAA----GAGGTTAGAGAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58130230 193 -  94987271 ACAACCTTCTGTTCACGTACCTGTCTTATACTCCAAGTCTCTCAGCAGCTTGCCTATGGAG-GA-AAAATGAAAACGATAGAAATGA--CTTGTAGACCCAGA-------GAACTCATTTCTTACTTGG-----AACAGGGCTCTACTGGAGATCC----CAAGGATAAAAGATACAGAAGCCAGAGCTCC--TTGGAAGGCTGAGATGGGAGAA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26388784 191 +  26524999 ACAGCCCTCTGCACACTCACCCGTCTTGTATTCCAAGTCTCTCAGCAGCTTCCCTGCGGAG-AAGGAAAG------GACAGCAATGACCCTTG-AACTTGGTAAACCTACAGGCTTATGTCCTGCGTGGTCAGGGGTCATTTCTTGCAAGGCAACCCCCACCCCCG---------------CTGAGGTCCCAGGGAGAAAGGAGAGAACTGCCA-
i canFam3.chr35            C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I

a score=229425.000000
s hg38.chr6_GL000254v2_alt  1533357 19 +   4827813 GGTGATGGAAAGGAGCTGG
s panTro5.chr6             30403236 19 + 175400573 GGTGATGGAAAGGAGCCGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30637527 19 + 173848474 GGTGATGGAAAGGAGCCGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     345294 19 +   2037526 GGTGATGGAAAGGAGCCGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75008575 19 + 122973662 GGTGATGGAAAGGCGCCGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30898763 19 + 172585720 GGTGATGGAAAGGAGCCGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30188337 19 - 170955103 GGTGATGGAAAGGAGCCGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     437198 19 +   1495729 GGTGATGGAAAGGAGCCGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     540833 19 -    863181 GGTGATGGAAAGGAGCTGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29687560 19 -  71996105 GGTGATGGAAAGGAGCCGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     423069 19 -    735854 GGTGATGGAAAGGAGCCGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     329621 19 -   1829203 GGTGATGGAAAGGAGCCGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30518307 19 + 171630274 GGTGATGGAAAGGAGCCGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           322245 19 +    515838 GGTGATGGAAAGGAGCCGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     952741 19 -   1771730 GGTGATGGAAAGGAGCCGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     136598 19 -    486031 GGTGATGGAGAGGAGCCGG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           377173 17 +  18854210 TATGATATAAAGGATCT--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58130423 19 -  94987271 TAAGGTGGGGAGAAGCCAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26388975 17 +  26524999 GAAGATG--AAGGTGCTGA
i canFam3.chr35            C 0 I 40
e micMur3.chr6               428372 741 + 123392446 I
e proCoq1.NW_012149775v1     386329 14 -   1411461 I

a score=698.000000
s hg38.chr6_GL000254v2_alt  1533376 5 +   4827813 GTGCG
s panTro5.chr6             30403255 5 + 175400573 GTGCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30637546 5 + 173848474 GTGCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     345313 5 +   2037526 GTGCG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75008594 5 + 122973662 GTGCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30898782 5 + 172585720 CTGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30188356 5 - 170955103 CTGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     437217 5 +   1495729 CTGCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     540852 5 -    863181 CTGCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29687579 5 -  71996105 CTGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     423088 5 -    735854 CTGCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     329640 5 -   1829203 CTGCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30518326 4 + 171630274 G-GCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           322264 4 +    515838 G-GCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     952760 4 -   1771730 A-GCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     136617 4 -    486031 G-GCC
i aotNan1.NW_018496901v1   C 0 C 0
s mm10.chr17               58130442 5 -  94987271 GAAAC
i mm10.chr17               C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e proCoq1.NW_012149775v1     386329 14 -   1411461 I
e canFam3.chr35            26388992 40 +  26524999 I
e otoGar3.GL873550           377190 0 +  18854210 C

a score=682259.000000
s hg38.chr6_GL000254v2_alt  1533381 55 +   4827813 CTCTTTCTACGAGGTAGCCCTGCTCTGACTCCCACCCTTTGTGCGCTCCCCAACC
s panTro5.chr6             30403260 55 + 175400573 CTCTTTCTACGAGGTAGCCCTGCTCTGACTCCCACCCTTTGTGCGCTCCCCAACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30637551 55 + 173848474 CTCTTTCTACGAGGTAGCCCTGCTCTGACTCCCACCCTTTGTGCGCTCCCCAACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     345318 55 +   2037526 CTCTTTCTACGAGGTAGCCCTGCTCTGACTCCCACCCTTTGTGCGCTCCCCAACC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75008599 55 + 122973662 CTCTTTCTATGAGGTAGCCCTGCTCTGACTCCCACCCTTTGTGCACTCCCCAACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30898787 55 + 172585720 CTCTTTCTACGAGGCAGCCCTGCTCTGACTCCCACCCTTTGTGCGCTCCCCAACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30188361 55 - 170955103 CTCTTTCTACGAGGTAGCCCTGCTCTGACTCCCACCCTTTGTGCGCTCCCCAACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     437222 55 +   1495729 CTCTTTCTACGAGGCAGCCCTGCTCTGACTCCCACCCTTTGTGCGCTCTCCAACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     540857 55 -    863181 CTCTTTCTACGAGGTAGCCCTGCTCTGACTCCCACCCTTTGTGCGCTCCCCAACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29687584 55 -  71996105 CTCTTTCTACGAGGTAGCCCTGCTCTGACTCCCACCCTTTGTGCGCTCCCCAACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     423093 55 -    735854 CTCTTTCTACGAGGTAGCCCTGCTCTGACTCCCACCCTTTGTGCGCTCCCCAACC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     329645 55 -   1829203 CTCTTTCTACGAGGTAGCCCTGCTCTGACTCCCACCCTTTGGGCGCTCCCCAACC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30518330 55 + 171630274 CTCTTTCTACAAGGTGGCCCTGCCCTGACTCCCACCCTTTATGCACTCCCCAACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           322268 55 +    515838 CTCTTTCTACAAGGTGGCCCCGCCCTGACTCCCACCCTTTATGTGCTCCCCAACC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     952764 55 -   1771730 CTCTTTCTACAAGGTGGCCCTGCCCTGACCCCCACCCTTTATGCGCTCCCCAACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     136621 55 -    486031 CTCTTTCTACAAGGTGGCCCTGCCCTGACTCCCACCCTTTATGCGCTCCCCAACC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     386343 54 -   1411461 CTCTGTCTACACGGTGGCCCCACTGTGACTCCCA-CCTGAACGCTCTCCCCAGCC
i proCoq1.NW_012149775v1   I 14 C 0
s otoGar3.GL873550           377190 53 +  18854210 -TCTCTCTAGGCGGTAGCCCCACTGTGATTCCCA-GCTTAATGATCTCCCCAACC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58130447 48 -  94987271 CTCC-----CAGTGTGGCCGAGC-CTGACCCCCGATCTG-GTGCTTTTCCCAATG
i mm10.chr17               C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e canFam3.chr35            26388992 40 +  26524999 I

a score=3817564.000000
s hg38.chr6_GL000254v2_alt  1533436 278 +   4827813 CTTACCCTGGAATTCCCTCAGGCCTCGTTGCAGAGAGAGGAGTTTATCTGAGAATTCTCCGGTCTTTTTTTTAACCACTCGAGCAATGGGTTTCCCAACCCAGAACTTCTTCCGTGGATACCTAAGAAGATGACATACATAACAAGCTGTTACTCAGCTCTTCTTACTTTCCTTcatacttatctctcaatcctcatggcaattatgaaggggagaggaaaggtatgattatccccaaacaagtgacagaaaaacagtggcccaaagacaccagctga---
s panTro5.chr6             30403315 278 + 175400573 CTTACCCTGGAATTCCCTCAGGCCTCGTTGCAGAGAGAGGAGTTTATCTGAGAATTCTCCGGTCTTTTTTTTAACCACTCGAGCAATGGGTTTCCCAACCCAGAACTTCTTCCGTGGATACCTAAGAAGATGACATACATAACAAGCTGTTACTCAGCTCTTCTTACTTTCCTTcatacttatctctcaatcctcacggcaattatgaaggggagaggaaaggtatgattatccccaaacaagtgacagaaaaacagtggcccaaagacaccagctga---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30637606 278 + 173848474 CTTACCCTGGAATTCCCTCAGGCCTCGTTGCAGAGAGAGGAGTTTATCTGAGAATTCTCCGGTCTTTTTTTTAACCACTCGAGCAATGGGTTTCCCAACCCAGAACTTCTTCCGTGGATACCTAAGAAGATGACATACATAACAAGCTGTTACTCAGCTCTTCTTACTTTCCTTcatacttatctctcaatcctcacggcaattatgaaggggagaggaaaggtatgattatccccaaacaagtgacagaaaaacagtggcccaaagacaccagctga---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     345373 278 +   2037526 CTTACCCTGGAATTCCCTCAGGCCTCGTTGCAGAGAGAGGAGTTTATCTGAGAATTCTCCGGTCTTTTTTTTAACCACTCGAGCAATGGGTTTCCCAACCCAGAACTTCTTCCGTGGATACCTAAGAAGATGACATACATAACAAGCTGTTACTCAGCTCTTCTTACTTTCCTTcatacttatctctcaatcctcatggcaattatgaaggggagaggaaaggtatgattatccccaaacaagttgcagaaaaacagtggcccaaagacaccagctga---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75008654 278 + 122973662 CTTACCCTGGAATTCCCTCAGGCCTCGCTGCAGAGAGAGGAGTTTATCTGAGAATTCTCCGGTCTTTTTTTTAACCACTCGAGCAATGGGTTTCCCAACCCAGAACTTCTTCCGTGGATACCTGAGAAGATGACATACGTAACAAGCTGTTACTCAGCTCTTCTTACTTTCCTTcatacttatctctcaatcctcatggcaattatgaaggggagaggaaaggtatgattatccccaaacaagtgacacaaaaacagtggcccaaagacaccagctga---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30898842 278 + 172585720 CTTACCCTGGAATTCCCTCAGGCCTCGCTGCAGAGACAGGAGTTTGTCTGAGAATTCTCCGGTCTTTTTTTTAACCACTCGAGCGATGGGTTTCCCAACCCAGAACTTCTTCCGTGGATACCTGAGAAGATGACAGACGTAACAACCTGTTACTCAGCTCTTCTTACTTTCCTTcatacttatctctcaatcctcatggcaattatgaaggggagaggaaaggtatgattgtccccggacgagtgacagaaaaacagcggcccaaagacaccagctga---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30188416 278 - 170955103 CTTACCCTGGAATTCCCTCAGGCCTCGCTGCAGAGACAGGAGTTTATCTGAGAATTCTCCGGTCTTCTTTTTAACCACTCGAGCGATGGGTTTCCCAACCCAGAACTTCTTCCGTGGATACCTGAGAAGATGACAGACGTAACAACCTGTTACTCAGCTCTTCTTACTTTCCTTcatacttatctctcaatcctcatggcaattatgaaggggagaggaaaggtatgattgtccccagacaagtgacagaaaaacagcggcccaaagaCACCAGCTGA---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     437277 278 +   1495729 CTTACCCTGGAATTCCCTCAGGCCTCGCTGCAGAGACAGGAGTTTGTCTGAGAATTCTCCGGTCTTCTTTTTAACCACTCGAGCGATGGGTTTCCCAACCCAGAACTTCTTCCGTGGATACCTGAGAAGATGACAGACGTAACAACCTGTTACTCAGCTCTTGTTACTTTCCTTcatacttatctctcaatcctcatggcaattatgaaggggagaggaaaggtatgattgtctctggacgagtgacagaaaaacagtggcccaaagacaccagctga---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     540912 278 -    863181 CTTACCCTGGAATTCCCTCAGGCCTCGCTGCAGGGAGAGGAGTTTATCTGAGAATTCTCCGGTCTTTTTTTTAACCACTCGAGCGATGGGTTTCCCAACCCAGAACTTCTTCCGTGGATACCTGAGAAGATGACAGACGTAACAACCTGTTACTCAGCTCTTCTTACTTTCCTTcatacttatctctcaatcctcatggcaattatgaaggggagaggaaaggtatgattgtccccagacaagtgacagaaaaacaatggcccaaagacaccagctga---
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29687639 278 -  71996105 CTTACCCTGGAATTCCCTCAGGCCTCGCTGCAGAGAGAGGAGTTTATCTGAGAATTCTCCGGTCTTTTTTTTAACCACTCGAGCGATGGGTTTCCCAACCCAGAACTTCTTCCGTGGATACCTGAGAAGATGACAGACGTAACAACCTGTTACTCAGCTCTTCTTACTTTCCTTcatacttatctctcaatcctcatggcaattatgaaggggagaggaaaggtatgattgtccccagacaagtgacagaaaaacagtggcccaaagaCACCAGCTGA---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     423148 278 -    735854 CTTACCCTGGAATTCCCTCAGGCCTCGCTGCAGGGAGAGGAGTTTATCTGAGAATTCTCCGGTCTTTTTTTTAACCACTCGAGCGATGGGTTTCCCAACCCAGAACTTCTTCCGTGGATACCTGAGAAGATGACAGACGTAACAACCTGTTACTCAGCTCTTCTTACTTTCCTTcatacttatctctcaatcctcatggcaattatgaaggggagaggaaaggtatgattgtccccagacaagtgacagaaaaacaatggcccaaagacaccagctga---
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     329700 278 -   1829203 CTTACCCTGGAATTCCCTCAGGCCTCGCTGCAGAGAGAGGAGTTTATCTGAGAATTCTCCGGTCTTTTTTTTAACCACTCGAGCGATGGGTTTCCCAACCCAGAACTTCTTCCGTGGATACCTGAGAAGATGACAGACGTAACAACCTGTTACTCAGCTCTTCTTACTTTccttcatatttatctctcaatcctcatggcaattacgaagcggagaggaaaggtatgattgtccccagacaagtgacagaaaaacagtggcccaaagacaccagctga---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30518385 264 + 171630274 CTTACCCTGGAATTCCCTCAGGCCTCGCTGCAGAGAGAGGAGTTTATCTGAGAATTCTCCGGTCTTTTTTTTAACCACTCGAGCAATGGGTTTCCCAACCCAGAACTTCTTCCGTGGATACCTGAGAAGATGGCAGACATGAAAACCTATTACTCAGCTT---TTACTTTCCTGCATACTTATCACTCAATCCTCATGACAGTTATGAAGGGGAGAGAAAAGGTGTGATGATCCC-----------CAGAAAAACCATGGCCCAAAGACATGAGCTGA---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           322323 264 +    515838 CTTACCCTGGAATTCCCTCAGGCCTCGCTGCAGAGAGAGGACTTTATCTGAGAATTCTCCAGTCTTTTTTTTAACCACTCGAGCAATGGGTTTCCCAACCCAGAACTTCTTCCGTGGATACCTGAGAAGATGACAGACATGAAAACCTGTTACTCAGCTT---TTActttcctgcatacttagttctcaatcctcatgacaattatgagggggagagaaaaggtatgatgatccc-----------caGAAAAACCATGACCCAAAGACACAAGCTGA---
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     952819 264 -   1771730 CTTACCCTGGAATTCCCTCAGGCCTCGCTGCAGAGAGAGGAGTTTATCTGAGAATTCTCCGGTCTTTTTTTTAACCACTCGAGCAATGGGTTTCCCAACCCAGAACTTCTTCCGTGGATACCTGAGAAGATGGCAGACATGAAAACCTGTTACTCAGCTT---TTACCTTCCTGCATACTTATCTTTCAATCCTCACGACAATTACAAAGGGAAGAGAAAAGGTATGATGATCCC-----------CAGAAAAACCGTGGCCCAAAGACACAAGCTGA---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     136676 264 -    486031 CTTACCCTGGAATTCCCTCAGGCCTCGCTGCAGAGAGAGGAGTTTATCTGAGAATTCTCCGGTCTTTTTTTTAACCACTCGAGCAATGGGTTTCCCAACCCAGAACTTCTTCCGTGGATACCTGAGAAGATGGCAGACATGAAAACCTATTACTCAGCTT---TTACTTTCCTGCATACTTATCTCTCAATCCTCATGACAATTACGAAGGGGAGAGAAAAGGTATGATGATACC-----------CAGAAAAACCGTGGCCCAAAGACACAAGCTGA---
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     386397 278 -   1411461 CTTACCTTGGAATTCCCTCAGGCCTCGCTGGAGAGAAAGGAGCTTCTCTGAGAATTCTCCTGTCCTTTTTTTAACCACCCGCGCGATGGGTTTCCCAATCCAGAACTTCTTCCGTGGGTACCTAAGAAGATGACAGACATCACAGCCTGTTACTTAGctcttcttactgttttgcgtatttatctctcaatcctcaggacaatgttgaaatgggcaggaaaagtatgattattcccagacaagtgacagagaaatagggacccgaagacaccagctga---
i proCoq1.NW_012149775v1   C 0 I 2450
s otoGar3.GL873550           377243 273 +  18854210 CTTACCTTGGAATTCTCTCAGGCCTCGCTGCAGGGAGAGGACTTTATCTGAGAATTCTCCTGTCCTTTTTTTAACTACTCGAGTGATGGGTTTCCCAATCCAGAACTTCTTCCGTGGATACCTGAGAAGATGGCAGATTTAACAACCTGTTGTTTAGCTCTTCTTACTTTTCTTcatacttatctctcaatcctcacaacaat-ttgcagtaggtgggaaaaatatg---attTCCAAACAAGTAGTAGAAAAGCAGGCACCC-AAAACACCAGCTAA---
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58130495 261 -  94987271 CTTACCCTGGAACTGCCTCAGGCCTCGCTGCAGAGAAAGAAGTTTATCTGAGAATTCTCCTGCCTTTCTTTTAACCATGTGAGGGATGGCTTTCCCAATCCAGAACTTCTTCCGTGGGTACCTGAAAGAGTGATAGACACAAACACCTGTCACTTGGCTCTTCTTGCTTTTCTGC------------CAGTGTtcatgacaattacaaggcaagcagggaaggtctcattatccctaATCAAG-GAAAGAAAAACTGG----CAAAGGCACTATGTGA---
i mm10.chr17               C 0 C 0
s canFam3.chr35            26389032 243 +  26524999 CTCACCTTGGAACTCCCTTAGGCCTCGCTGCAGGGACAGAAGCTTATCAGAGAACTCGCTGGTCTTCTTTTTAAGCACCCGAGCAATGGGTTTCCCAATCCAGAACTTCTTCCGAGGATACCTGGGAAGATGACACATG---GAACCCATTACTTAG------------GCCTGTGAGTGTTTCTCTGGGTTCTCACGACAACTATGAAGGTGAACGCA----TCTGATGAGAAC----------ACAGAACAA----GGCTGAGA-----CAGTTGACCA
i canFam3.chr35            I 40 C 0
e micMur3.chr6               428372 741 + 123392446 I

a score=783618.000000
s hg38.chr6_GL000254v2_alt  1533714 71 +   4827813 accagggct---tcagaacatcagtag--actccacatccagggcgctctgtctactaagccaTGTTTCTAACCTC
s panTro5.chr6             30403593 71 + 175400573 accagggct---tcagaacatcagtag--actccacatccagggcgctctgtctactaagccaTGTTTCTAACCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30637884 71 + 173848474 accagggct---tcagaacatcagtag--actccacatccagggcgctctgtctactaagccaTGTTTCTAACCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     345651 71 +   2037526 accagggct---tcagaacatcagtag--actccacatccagggcactctgtctactaagccaTGTTTCTAACCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75008932 71 + 122973662 gccagggct---tcagagcatcagtag--actccacatccagggcactctgtctactaagccatgtttctaacctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30899120 71 + 172585720 gccagggct---tcagaccatcagtag--actccacatccagggcgctctgtctcctaagccaTGTTTCTAAACTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30188694 56 - 170955103 GCCAGGGCT---TCAGAC-----------------CATCCAGGGCGCTCTGTCTCCTAAGCCATGTTTCTAACCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     437555 71 +   1495729 gccagggct---tcagaccatcagtag--actccacatccagggcgctctgtctcctaagccaTGTTTCTAAACTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     541190 71 -    863181 gccagggct---tcagaccatcagtag--actccacatccagggcgctctgtctcctaagccaTGTTTCTAACCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29687917 71 -  71996105 GCCAGGGCT---TCAGACCATCAGTAG--ACTCCACATCCAGGGCACTCTGTCTCCTAAGCCATGTTTCTAACCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     423426 71 -    735854 gccagggct---tcagaccatcagtag--actccacatccagggcgctctgtctcctaagccaTGTTTCTAACCTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     329978 71 -   1829203 gccagggct---tcagaccatcagtag--actccacatccagggcgctctgtctcctaagccaTGTTTCTAACCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30518649 71 + 171630274 GCCAGGGCT---TCAGACTATCAATAG--ACTCCACATCCAGGATGCTCTGCCTACTAAGCCATGTTTCTAACCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           322587 69 +    515838 GCCAGGGCT---TCAGACTATCA--AG--ACTCCACATCCAGGATGCTCTGCCTACTAAGCCATGTTTCTAACCTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     953083 71 -   1771730 GCCAGGGCT---TCAGACTATCAATAG--ACTCCACATCCAGGATGCTCTGCCTACTAAGCCATATTTCTAACCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     136940 71 -    486031 GCCAGGGCT---TCAGACTATCAATAG--ACTCCACATCCAGGATGCTCTGCCTACTAAGCCACGTTTCTAACCTC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           377516 71 +  18854210 GATCGGACT---TAAGACCATCAGCAG--ACTCAACTGCCACAGCTCTTTGTCTACTGAGCCACAATTCTACTCTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58130756 70 -  94987271 ACCAGGATA---TAAGACTGCCAGAAG--ATTTCACAAGT-GAGCGGACTCTCTGCCAAGTCAGGCTTTTACTCTC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26389275 75 +  26524999 GCCAGGACTGGCCAGGGATTTGAGCAGCCACCCCCCA-CCATGGCACTGGGTGTGTTGGGCCATGTGTCCACCCCC
i canFam3.chr35            C 0 I 26
e micMur3.chr6               428372 741 + 123392446 I
e proCoq1.NW_012149775v1     386675 2450 -   1411461 I

a score=820615.000000
s hg38.chr6_GL000254v2_alt  1533785 72 +   4827813 TCTGCTCTGTCCCACCTCAAATAAGGCCAGTGGGCCAAGGAGCTGGGGCTACACAGAGAAC-TCATAAGGAGG
s panTro5.chr6             30403664 71 + 175400573 TCTGCTCTGTCCCACCTCAAATAAGGCCAGTGGGCCAAGGAGCTGGG-CTACACAGAGAAC-TCATAAGGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30637955 71 + 173848474 TCTGCTCTGTCCCACCTCAAATAAGGCCAGTGGGCCAAGGAGCTGGG-CTACACAGAGAAC-TCATAAGGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     345722 72 +   2037526 TCTGCTCTGTCCCACCTCAAATAAGGCCAGTGGGCCAAGGAGCTGGGGCTACACAGAGAAC-TCATAAGGAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75009003 72 + 122973662 tctgctCTGTCCCACCTCAAATAAGGCCAGTGGGCCAAGGAGCTGGGGCTACACAGAGAAC-TCATAAGGAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30899191 72 + 172585720 TCTGCTCTGTCCCACCTCAAATAAGGCCAGTGGGCCAAGGAGCTGGGGTTACACAGAGAAC-TCACAAAGAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30188750 72 - 170955103 TCTGCTCTGTCCCACCTCAAATAAGGCCAGTGGGCCAAGGAGCTGGGGTTACACAGAGAAC-TCACAAAGAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     437626 72 +   1495729 TCTGCTCTGTCCCACCTCAAATAAGGCCAGTGGGCCAAGGAGCTGGGGTTACACAGAGAAC-TCACAAAGAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     541261 72 -    863181 TCTGTTCTGTCCCACCTCAAATAAGGCCAGTGGGCCAAGGAGCTGGGGTTACACAGAGAAC-TCACAAGGAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29687988 72 -  71996105 TCTGCTCTGTCCCACCTCAAATAAGGCCAGTGGGCCAAGGAGCTGGGATTACACAGAGAAC-TCATAAGGAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     423497 72 -    735854 TCTGCTCTGTCCCACCTCAAATAAGGCCAGTGGGCCAAGGAGCTGGGGTTACACAGAGAAC-TCACAAGGAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     330049 72 -   1829203 TCTGCTCTGTCCCACCTCAAATAAGGCCAGTGGGCCAAGGAGCTGGGGTTACACAGAGAAC-TCATAAGGAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30518720 72 + 171630274 TCTGCTCTGTCCCACCTCAAATAAGGCCAGTGGGCCAAGGAGCTGGGGTTACACAGAGAAC-TCATAAGGAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           322656 72 +    515838 TCTGCTCTGTCCCACCTCAAATAAGGCCAGTGGGCCAAGGAGCTGGGGTTACACAGAGAAC-TCATAGAGAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     953154 72 -   1771730 TCTGCTCTGTCCCACCTCAAATAAGGCCAGTGGGCCAAGGCGCTGGGGTTATACAGAGAAC-TCATAAGGAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     137011 72 -    486031 TCTGCTCTGTCCCACCTCAAATAAGGCCAGTGGGCCAAGGAGCTGAGGTTACACAGAGAAC-TCATAAGGAGG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           377587 71 +  18854210 TCTACTCTGTCCCACCTCAAACAAGGATGGTCAGTCAAGGAGCCAGGGTT--ACAGAGAACTTTCTCAGGTAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58130826 58 -  94987271 T-TGCTGTG------CTCAGGTGAAGGCTGTGAGCCCAG----TTGGACT--CTGGAGATC-GTGTTGGGAG-
i mm10.chr17               C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e proCoq1.NW_012149775v1     386675 2450 -   1411461 I
e canFam3.chr35            26389350 26 +  26524999 I

a score=2604161.000000
s hg38.chr6_GL000254v2_alt  1533857 234 +   4827813 AGAGCAAGTCTCCAGTTCTCAATGATGT--G-TCCTGCTCCTCAGAAAGGCATCAG-----GATGAACCAT-GGGATGTGAGTACCTCTGGCACCATACCACTCCCCATGAATTCAAATGCACC-TGGTCA---G---AAGCGG-GGGAACATAAACA-AGGGGGATGAGGTACGCCATGGAGAGGAGA--CTCTTTTACCTGTTTAGGAAGTCTCTCGTG---TCCTAGAAGG----G--AAAGAAAAAAGCACAAGTATCA
s panTro5.chr6             30403735 235 + 175400573 AGAGCAAGACTGCAGTTCTCAAGGATGT--G-TCCTGCTCCTCAGAAGGGCATCAG-----GATGAACCAT-GGGATGTGAGTACCTCTGGCACCATACTACTCCCCATGAATTCAAATGCACC-TGGTCA---G---AAGGGGAGGGAACATAAACA-AGGGGGATGAGGTACGCCATGGAGAGGAGA--CTCTTTTACCTGTTTAGGAAGTCTCTCGTG---TCCTAGAAGG----G--AAAGAAAAAAGCACAAGTATCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30638026 235 + 173848474 AGAGCAAGACTGCAGTTCTCAAGGATGT--G-TCCTGCTCCTCAGAAGGGCATCAG-----GATGAACCAT-GGGATGTGAGTACCTCTGGCACCATACTACTCCCCATGAATTCAAATGCACC-TGGTCA---G---AAGGGGAGGGAACATAAACA-AGGGGGATGAGGTATGCCATGGAGAGGAGA--CTCTTTTACCTGTTTAGGAAGTCTCTCGTG---TCCTAGAAGG----G--AAAGAAAAAAGCACAAGTATCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     345794 235 +   2037526 AGAGCAAGTCTGCAGTTCTCAAGGATGT--G-TCCTGCTCCTCAGAAGGGCATCAC-----GATGAACCAT-GGGATGTGAGTACCTCTGGCACCATACCACTCCCCATGAATTCAAATGCACC-TGGTCA---G---AAGGGGAGGGAACATAAACA-AGGGGGATGAGGTACGCCATGGAGAGGAGA--CTCTTTTACCTGTTTAGGAAGTCTCTCGTG---TCCTAGAAGG----G--AAAGAAAAAAGCACAAGTATCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75009075 237 + 122973662 AGAGCAAGTCTCCAGTTCTCAAGGATGT--G-TCCTGCTCCTCAGAAGGGCATCAG-----GATGAATCAT-GGGATGTGAGTACCTCTGGCACCATACCACTCCCCATGAATTCAAATGCACC-TAGTTA---G---AAGGGGAGGAAACATAAACA-AGGGGGATGAGGTACGCCATGGAGAGGAGA--CTCTTTTACCTGTTTAGGAAGTCTCTCGTG---TCCTAGAAGG----GAAAAAAAAAAAAGCACAAGTATCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30899263 231 + 172585720 AGAGCAAGTCTCCAGTTCTCAAGGATGT--G-TCCTGCTCCTCAGAAGAGTATCAG-----GATGAACCAT-GGGATGTGAGTACCTCTGGCACCACACCACTCCCCATG-ATTCAAATGGACC-TGGTCA---G---AAGGGGAGGGAACATAAACA-AGGGGGATGAGGTGCGCCATGGAGAGGAGA--CTC--TTACCTGTTTAGGAAGTCTCTCGTG---TCCTAGAAGG----G---AAAAAAAAAGCACAAGTATCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30188822 231 - 170955103 AGAGCAAGTCTCCAGTTCTCAAGGATGT--G-TCCTGCTCCTCAGAAGGGCATCAG-----GATGAACCAT-GGGATGTGAGTACCTCTGGCACCACACCACTCCCCATG-ATTCCAATGGACC-TGGTCA---G---AAGGGGAGGGAACATAAACA-AGGGGGATGAGGTGCGCCGTGGAGAGGAGA--CTC--TTACCTGTTTAGGAAGTCTCTCGTG---TCCTAGAAGG----G---AAAAAAAAAGCACAAGTATCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     437698 232 +   1495729 AGAGCAAGTCTCCAGTTCTCAAGGATGT--G-TCCTGCTCCTCAGAAGAGTATCAG-----GATGAACCAT-GGGATGTGAGTACCTCTGGCACCACACCACTCCCCATG-ATTCCAATGGACC-TGGTCA---G---AAGGGGAGGGAACATAAACA-AGGGGGATGAGGTGCGCCGTGGAGAGGAGA--CTC--TTACCTGTTTAGGAAGTCTCTCGTG---TCCTAGAAGG----G--AAAAAAAAAAGCACAAGTATCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     541333 233 -    863181 AGAGCAAGTCTCCAGTTCTCAAGGATGT--G-TCCTGCTCCTCAGAAGGGCATCAG-----GATGAACCAT-GGGATGTGAGTACCTCTGGCACCACACCATTCCCCATG-ATTCAAATGGACC-TGGTCA---G---AAGGGGAGGGAACATAAACA-AGGGGGATGAGGTGCGCTGTGCAGAGAAGA--CTC--TTACCTGTTTAGGAAGTCTCTCGTG---TCCTAGAAGG----G-GAAAAAAAAAAGCACAAGTATCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29688060 233 -  71996105 AGAGCAAGTCTCCAGTTCTCAAGGATGT--G-TCCTGCTCCTCAGAAGGGCATCAG-----GATGAACCAT-GGGATGTGAGTACCTCTGGCACCACACCACTCCCCATG-ATTCAAATGGACC-TGGTCA---G---AAGGGGAGGGAACATAAACA-AGGGGGATGAGGTGCGCCGTAGAGAGGAGA--CTC--TTACCTGTTTAGGAAGTCTCTCGTG---TCCTAGAAGG----G-AAAAAAAAAAAGCACAAGTATCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     423569 233 -    735854 AGAGCAAGTCTCCAGTTCTCAAGGATGT--G-TCCTGCTCCTCAGAAGGGCATCAG-----GATGAACCAT-GGGATGTGAGTACCTCTGGCACCACACCATTCCCCATG-ATTCAAATGGACC-TGGTCA---G---AAGGGGAGGGAACATAAACA-AGGGGGATGAGGTACGCTGTGGAGAGAAGA--CTC--TTACCTGTTTAGGAAGTCTCTCGTG---TCCTGGAAGG----G-GAAAAAAAAAAGCACAAGTATCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     330121 233 -   1829203 AGAGCAAGTCTCCAGTTCTCAAGGATGT--G-TCCTGCTCCTCAGAAGGGCATCAG-----GATGAACCATGGGGATGTGAGTACCTCTGGCACCACACCACTCCCCATG-ATTCAAATGGACC-TGGTCA---G---AAGGGGAGGGAACATCAACA-AGGGGGATGAGGTACGCCGTGGAGAGGAGA--CTC--TTACCTGTTTAGGAAGTCTCTCGTG---TCCTAGAAGG----G--AAAAAAAAAAGCACAAGTATCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30518792 232 + 171630274 AGAGCAAGTCTCCAGTTCTCAAGGATGT--G-TCCTGCTCTCCAGAAGGGCATCAT-----GACGAACCAT-GGGATGTGAGTACCTCTGGCACCATATCACTCCCCATGTATTCAAATGGACC-TGGTCA---G---AAGGGGCGGGAACACAAACA-AGGGGGATGAGGTATGCCGGGGAGAGGAGA--CTCTTTTACCTGTTTAGGAAGTCTCTTGTG---TCCTAG-------AA--AAAAAAAAAAGCACAAGTATCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           322728 237 +    515838 AGAGCAAGTCTCCAGTTCTCAAGGATGT--G-TCCTGCTCTCTAGGAGGGCATCAG-----GACGAACCAT-GGGATGTGAGTACCTCTGGCACCATATCACTCCCCGTGAATTCAACTGGACC-TGGTCA---G---AAGGGAAGGGAACATAAACA-AGGGGGATGAGGTACGCCAGGGAGAGGAGA--CTCTTTTACCTGTTTAGGAAATCTCTTGTG---TCCTAGAAGG--AAA--AGAAAAAAAAGCGCAAGTATCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     953226 239 -   1771730 AGAGCAGGTCTCCGGTTCTCAAGGATGT--G-TCCTGCTCTGTAGAAGGGCATCAG-----GACGAACCAC-GGGATGTGAGTACCTCTGGCACCATATCACTCCCTGTGAATTCAACTGGACC-TGGTCA---G---AAGGGGAGGGAACATAAATA-AGAGGGATGAGGTACGCCGGGGAAAGGAGA--CTCTTTTACCTGTTTAGGAAGTCTCTTGTG---TCCTAGAAGGAAAAA--AAAAAAAAAAGCACAAGTATCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     137083 235 -    486031 AGAGCAAGTCTCCAGTTCTCAAGGATGT--G-TCTTGATCTCTAGAAGGGCATCAG-----GATGAACCAC-GGGATGTGAGTACCTCTGGTACCATATCACTCCCCATGAATTCAAATGGACC-TGGTCA---G---AAGGGGAGGGAACATAAAAA-AGGGGGATGAGGTATGCCGGGGAGAGGAGA--CTTTTTTACCTGTTTAGGAAGTCTCTTGTG---TCCTAGAAGG----A--AAAAGAAAAAGCACAAGTATCA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           377658 240 +  18854210 AGAGCAAGTTTCCAGTTCTTGAGAATTCTGT-TCCTACTTCCCAGAAGGGCATCAG-----GATAAATCAT-GCCATGGGA--ACCTCTGGAACCATACCATGCCCTATTAATTCAAATGACCC-TGGTCA---GGAAGAGGTGAGGAAACACAAACACAGAGGAATGAGGCACACTATGGGGACAAAATGCTTTTTTACCTGATTAGGAAGTCTCTAGTGTCCTCCTGGAAGG----G------AAGAAAGCACAAGCATCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58130884 213 -  94987271 ACAACAA-TATCTAATCATCAAAGAT-T--G-ACCTCTTTCTT-GAAAGCCAT-GG-----GATGAAGCAA-GGGCTGCT-GTGCAGTTGGCACCCTA-CACTCCTACTA---CTACGTGGACCATAGCCATACA---AGTGGGAGGGAAGAAGAATG-ATGAAGACGAG-----------CAAGTGAA--CTC--TTACTTGTTGGCGAAGTCCTTGGTG---TCCTGCAAGG----G------AAGAAAACAGAGGCACCA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26389376 221 +  26524999 AGAGCAGGGCTCCAGTTCCCAAGGCTGT--GCTGTTGCTTCACAGGAGCGAGGCTGGCTGCGGTGAACCAA-AGGATGCGGACACATGTGGTACC--ACTGCTCTGCGTG----------GGTC-AGGGTA---G---GAAGCCAGGG-ACACAGGC--AGGGGACCGAGGTGCATGCAGAAGGGAAGC--CAG--TTACCTGTTCAGGAAGTCCCTGGTG---TCCTACAGGG----G------AAGAAAGGACATGCATCA
i canFam3.chr35            I 26 I 1266
e micMur3.chr6               428372 741 + 123392446 I
e proCoq1.NW_012149775v1     386675 2450 -   1411461 I

a score=386416.000000
s hg38.chr6_GL000254v2_alt  1534091 34 +   4827813 A--TATGAATCAAATAAGACTTCAATGCATCTGCAC
s panTro5.chr6             30403970 34 + 175400573 A--TATGAATCAAATAAGACTTCAACGCATCTGCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30638261 34 + 173848474 A--TATGAATCAAATAAGACTTCAACGCATCTGCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     346029 34 +   2037526 A--TATGAATCAAATAAGACTTCAACGCATCtgcac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75009312 34 + 122973662 A--TATGAATCAAATAAGACTTCAATGCATCtgcac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30899494 34 + 172585720 A--TATGAATCAAATAAGACTTCAATGCATTtgcac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30189053 34 - 170955103 A--TATGAATCAAATAAGACTTCAATGCATTtgcac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     437930 34 +   1495729 A--TATGAATCAAATAAGACTTCAATGCATTTGCAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     541566 34 -    863181 A--TATGAATCAAACAAGACTTCAATGCATCtgcac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29688293 34 -  71996105 A--TATGAATCAAATAAGACTTCAATGCATTtgcac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     423802 34 -    735854 A--TATGAATCAAACAAGACTTCAATGCATCtgcac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     330354 34 -   1829203 A--TATGAATCAAACAAGACTTCAATGCATCtgcac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30519024 34 + 171630274 G--TATGAATCAAATAAGACTCCAATGCAtatgcac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           322965 34 +    515838 G--TATGAATCAAATAAGACTCCAATGCctatgcac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     953465 34 -   1771730 G--TATGAATCAAATAAGACTCCAATGCAtatgcac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     137318 36 -    486031 GTATATGAGTCAAATAAGACTCCAATGCAtatgcat
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           377898 34 +  18854210 A--TGTGAATCAAATAAGACTTAAATTCTtatgcac
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58131097 29 -  94987271 A--AGTGAATTAAGTAAAACT-----GCATCTACAC
i mm10.chr17               C 0 I 2087
e micMur3.chr6               428372 741 + 123392446 I
e proCoq1.NW_012149775v1     386675 2450 -   1411461 I
e canFam3.chr35            26389597 1266 +  26524999 I

a score=12810515.000000
s hg38.chr6_GL000254v2_alt  1534125 1240 +   4827813 CCAACACTGTAGCAGAGATgggacatatcagtgaacaaaacaaatgtggtcccttttttatggagctgacattccagtggggtcactgcataaaacaacaagaaaacaaacaaaatcggcacaatgacagaagccacaatggctgggagatgacatgggcaacctctctgggagatacctgcgcagagaattgacggataagaagtactggccggatgaagagaggt---aaggtaaaacaggaaagggcttggtgagaacggcagaggccagactgcgcagggctggatatgcatggtaaggagtttcacttttgctccacgtacagtggaaacccaccaaggg-tttcaagtaggggcatgatatgTGTGATCCGCTCTACAtgtggctgagactgctgtgtaacctccagagtccactctccccttcctccttttaataatagaa-cccccggagttattgctggtcaggcggc--cacctgggaagactacattttccagatcccctacgacaaggtctggtcatgagactaagttccagccaatggaa--tgtgatagaaagcaatgaccataattctgggcattgtccttt-aaaaaaagaaaattgctttctacttcctttttacccc--aactgaattttggacatggtggtggtga--gcccaactttgaccacgcagcagaggacaacatccctagaagctggtggaagaaccacatggaagtaacccagtcccttggataagcttatgtacagctactgtgatagctctagaccctg--------cacctctgaactgttaactgaggcagaaataaac------------------------------------------------------------------------tt----ctattctgtttgcgtcactgtACAGCAGTGAGCCAAAACCCTAAGTGACCACtcacttggctgccccacagagaagggactaag-gaggcaagaggaacatgg---ggaggttggtccggaggcttttgccgtggaccaggggagagctaaagatggcctgaactaaggtggtggcagtagggagaaaaagagagaagcaatacattccaggta--ttttagagacagattcaactggacatactggtCAAGGATAAACAAG-----AACAGAGCATGGTTTGTACAGGGGGGAGAATGGTGGTGCTATCTCTGTGACAGACAGG---TGGTAGGGCAGGGTGAGTGGGAAGAGGGCTATTCTGAGA---TGCTCAGATTCCCTTTTGTGAGTCAAAAGCCTCCTTAATACCCTGTATTAATTGATTTTTGCCTTCCTttcactcat
s panTro5.chr6             30404004 1240 + 175400573 CCAACAATGTAGCAAAGATgggacatatcagtgaacaaaacaaatgtggtcccttttttatggagctgacattccagtggggtcactgcataaaacaacaagaaaacaaacaaaatcggcacaatgacagaagccacaatggctgggagatgacatgggcaacctctctgggagatacctgcgcagagaattgacggataagaagtactggccagatgaagagaggt---aaggtaagacaggaaagggcttggtgaaagcggcagaggccagactgcgcagggctggatatgcatggtaaggagtttgacttttgctccacgtacagtggaaacccaccaaggg-tttcaagtaggggcatgatatgTGTGATCCGCTCTACAtgtggctgagactgctgtgtaacctccagagtccactctccccttcctccttttaataatagaa-cccccggagttattgctggtcaggcggc--cacctgggaagactacattttccagatcccctacgacaaggtctggtcatgagactaagttccagccaatggaa--tgtgatagaaagcaatgaccataattctgggcattgtccttt-aaaaaaagaaaattgctttctacttcctttttacccc--aactgaattttggacatggtggtggtga--gcccaactttgaccacgcagcagaggacaacatccctagaagctggtggaagaaccacatggaagtaacccagtcccttggataagcttatgtacagctactgtgatagctctagaccctg--------cacctctgaactgttaactgaggcagaaataaac------------------------------------------------------------------------tt----ctattctgtttgcgtcactgtACAGCAGTGAGCCAAAACCCTAAGTGACCACtcacttggctgccccacagagaagggactaag-gaggcaagaggaacatgg---ggaggttggtccggaggcttttgccgtggaccaggggagagctaaagatggcctgaactaaggtggtggcagtagggagaaaaagagagaagcaatacattccaggta--ttttagagacagattcaactggacatactggtCAAGGATAAACAAG-----AACAGAGCATGGTTTGTACAGGAGGGAGAATGGTGGTGCTATCTCTGTGACAGACAGG---TGGTAGGGCAGGGTGAGTGGGAAGAGGGCTATTCTGAGA---TGCTCAGATTCCCTTTTGTGAGTCAAAAGCCTCCTTAATACCCTGTATTAATTGATTTTTGCCTTCCTttcactcat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30638295 1239 + 173848474 CCAACACTGTAGCAAAGATgggacatatcagtgaacaaaacaaatgtggtcccttttttatggagctgacattccagtggggtcactgcataaaacaacaagaaaacaaacaaaatcggcacaatgacagaagccacaatggctgggagatgacatgggcaacctctctgggagatacctgcgcagagaattgacggataagaagtactggccagatgaagagaggt---aaggtaagacaggaaagggcttggtgaaagcggcagaggccagactgcgcagggctggatatgcatggtaaggagtttgacttttgctccacgtacagtggaaacccaccaaggg-tttcaagtaggggcatgatatgTGTGATCCGCTCTACAtgtggctgagactgctgtgtaacctccagagtccactctccccttcctccttttaataatagaa-cccccggagttattgctggtcaggcggc--cacctgggaagactacattttccagatcccctacgacaaggtctggtcatgagactaagttccagccaatggaa--tgtgatagaaagcaatgaccataattctgggcattgtccttt-aaaaaaagaaaattgctttctacttcctttttacccc--aactgaattttggacatggtggcggtga--gcccaactttgaccacgcagcagaggacaacatccctagaagctggtggaagaaccacat-gaagtaacccagtcccttggataagcttatgtacagctactgtgatagctctagaccctg--------cacctctgaactgttaactaaggcagaaataaac------------------------------------------------------------------------tt----ctattctgtttgcgtcactgtACAGCAGTGAGCCAAAACCCTAAGTGACCACtcacttggctgccccacagagaagggactaag-gaggcaagaggaacatgg---ggaggttggtccggaggcttttgccgtggaccaggggagagctaaagatggcctgaactaaggtggtggcagtagggagaaaaagagagaagcaatacattccaggta--ttttagagacagattcaactggacatactggtCAAGGATAAACAAG-----AACAGAGCATGGTTTGTACAGGAGGGAGAATGGTGGTGCTATCTCTGTGACAGACAGG---TGGTAGGGCAGGGTGAGTGGGAAGAGGGCTATTCTGAGA---TGCTCAGATTCCCTTTTGTGAGTCAAAAGCCTCCTTAATACCCTGTATTAATTGATTTTTGCCTTCCTttcactcat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     346063 1239 +   2037526 ccaacactgtagcagagatgggacatatcagtgaacaaaacaaatgtggtcccttttttatggagctgacattccagtggggtcactgcataaaacaacaagaaaacaaacaaaatcggcacaatgacagaagccacaatggctgggagatgacatgggcaaactctctgggagatacctgcacagaaaattgacggataagaagtactggccagatgaagagaggt---aaggtaaaacaggaaagggcttggtgaaagcggcagaggccagactgcgcagggctggatatgcatggtaaggagtttgacttttgctccacgtacagtgg-aacccaccaaggg-tttcaagtaggggcatgatatgTGTGATCCGCTCTACAtgtggctgagactgctgtgtaacctccagagtccactctccccttcctccttttaataatagaa-cccctggagttattgctggtcaggcggc--cacctgggaagactacattttccagatcccctacgacaaggtcgggtcatgagactaagttccagccaatggaa--tgtgatagaaagcaatgaccataattctgggcattgtccttt-aaaaaaagaaaattgctttctacttcctttttacccc--aactgaattttggacatggtggtggtga--gcccaactttgaccacgcagcagaggacaacatccctagaagctggtggaagaaccacatggaagtaacccagtcccttggataagcttatgtacagctactgtgatagctctagaccctg--------cacctctgaactgttaactgaggcagaaataaac------------------------------------------------------------------------tt----ctattctgtttgcgtcactgtACAGCAGTGTGCCAAAACCCTAAGTGACCACtcacttggctgccccacagagaagggactaag-gaggcaagaggaacatgg---ggaggttggtccgcaggcttttgccgtggaccaggggagagctaaagatggcccgaactaaggtggtggcagtagggagaaaaagagagaagcaatacattccaggta--ttttagagacagattcaactggacatactggtCAAGGATAAACAAG-----AACAGAGCATGGTTTGTACAGGAGGGAGAATGGTGGTGCTATCTCTGTGACAGACAGG---TGGTAGGGCAGGGTGAGTGGGAAGAGGGCTATTCTGAGA---TGCTCAGATTCCCTTTTGTAAGTCAAAAGCCTCCTTAATACCCTGTATTAATTGATTTTTGCCTTCCTttcactcat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75009346 1235 + 122973662 ccaacactgtagcagaggtgggacatatcagtgaacaaaacaaatgtggtcccttttttatggagctgacattccagtggggtcactggataaaacaacaagaaaacaaacaaaatcatcacaatgacagaagccaccatggctgggggatgacaggggcaacctctctgggagatacctgcgcagagaattgagggatgagaagtactggccagatgaagagaggt---aaggtaaaacaggaaagggcttggtgaaagcggcagaggccagatcgcgcagggctggatatgcatggtaaggagtttgacttttgctccacatacagtggaaacccaccaaggg-tttcaagtaggggcataatatgTGTGATCTGCTCTACAtgtggctaagactgctgtgtaacctccagcgtccactctccccttcctcctcttaataatagac-cccctggagttattgctggtcagatggc--cccctgggaagactacattttccagatcccctacgacaaggcctggtcatgagactaagttccagccaatggaa--tgtgataggaagcaatgaccataattctgggcattgtccttt-aaaaaaagaaaattgctttctacttcctttttacccc--aactgaattttggacatggtggtggtga--gcccaactttgaccacacagcagaggaca-----tctagaagctggcagaagaaccacatggaagtaacccagtcccttggataagcttatatacagctactgtgatagctctagaccctg--------gacctctgaactattaacggaggcagaaataaac------------------------------------------------------------------------tt----ctattctgtttgcatcactgtACAGCAGCGAGCCAAAACCCTAAGTgaccacttgcttggctgccccacagagaagggactaag-gaggcaagaggaacatgg---ggaggttggtccggaggcttttgctgtggaccaggggagagctaaacatggcctgaactaaggtggtggcagtagggagaaaaagagagaagcaacacattccaggta--ttttagagacagattcaactggacatactggtCAAGGATAAACAAG-----AACAGAGCACGGTTTGTACAGGAGGGAGAACGGTGGTGCTATCTCTGTGACAGACAGG---TGGTAGGGCAGGGTGAGTGGGAAGAGGGCTATTCTGAGA---TGCTCAGATTCCCTTTTGTGAGTGAAAAGCCTCCTTAATACTCTGTATTAATTGATTTTTGCCTTCCTttcactcat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30899528 1233 + 172585720 ccaacactgtagcagaggtgggacatatcagtgaacaaaacaaatgtggtccgttttttatggagatgacattctagtggggtcactggataaaacaacaagaaaacaaacaaaatcagcacaatgacagaagccaccatggctgggggatgacaggggcaacctctctgggagatacctgtgcagagaactcagggatgagaagtactggccagatgaagagagac---aaggtaaaacaggaaagggcttggtgaaagcggcagaggccagatcgcgcagggctggatatgcatggtaaggagtttgaatttttctccacgtacaatggaaagccaccaaggg-tatcaagtaggggcatgttatgTGTGATCCGCTCTACAtgtggctgagactgctgtgtaacctccagagtccactctccccttcctccttttaataatagaa-cccctggagttatcgctggtcagatggt--cacctgggaagactacattttccagatcccccatgacaaggtctggtcacgagactaagtttcagccaatggca--tgtgatagaaagcaatgaccataattccgggcattgtccttt-aaaaaaagaaaattgctttctacttcctctttccccc--aactgaattttggacatggtggtggtga--gccgaactttgaccacacagcagaggacaacatccctagaagctggtagaagaaccacatggaagtaactcagtcccctggatgagcttatgtacagctaccgtgatagctctagaccctg--------cacctctgacctgtt-actgagacagaaataaac------------------------------------------------------------------------tt----ctattctgtttgcgtcactgtACAGCAGCGAGCCAAAACCCTAAGTGACCACtcacttggctgtcccacagagaagggactaag-gaggcaacaggaacatgg---gcaggttggtccggacgtttttgctgtggaccaggggagagctaaagatggcctgaactaaagtggtggcagtagggagaaaaagagagaagcaatatattccaggta--tttt--agacagattcaactggacatactggtaaaggatAATCAAC-----AACAGAGCATGGTTTGTACAGGAGGGAGAACGGTGGTGCTATCTCTGTGACAGACAGG---TGGTAGGACAGGGTGAGTGGGAAGAGGGTTATTCTGAGA---TACTCAGATTCCCTTTTGTGAGTCAAAAGCCTCCATAATACTCTGT----ATTGATTTTTGCCTTCCTttcactcat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30189087 1235 - 170955103 ccaacactgtagcagaggtgggacgtatcagtgaacaaaacaaatgtggtcgcttttttatggagatgacattccaatgaggtcactggataaaacaacaagaaaacaaacaaAATCAGCACAATGACAGAAGCCACCATGGCTGGGGGATGACAGGGGCAACCTCTCTGGGAGATACCTGCGCAGAGAACTCAGGGATGAGAAGTACTGGCCAGATGAAGAGAGAT---AAGGTAACACAGGAAAGGGCTTGGTGAAAGCGGCAgaggccagatcgcgcagggctggatatgcatggtaaggagtttgaatttttctccacgtacagtggaaagccaccacggg-tatcaagtaggggcacgatatgTGTGATCCGCTCTACAtgtggctgagactgctgtgtaacctccagagtccactctccccttcctccttttaataatagaa-cccctggagttattgctggtcagatggt--cacctgggaagactacattttccagatcccccatgacaaggtctggtcatgagactaagttccagccaatggaa--tgtgatagaaagcaatgaccataattccaggcattgtccttt-aaaaaaagaaaattgctttctacttcctctttccccc--agctgaattttggacatggtggtggtga--gcccaactttgaccacacagcagaggacaacatccctagaagctggtagaagaactacatggaagtaacccagtcccctggatgagc-tatgtacagctaccatgatagctctagaccctg--------cacctctgacctgtt-actgaggcagaaataaac------------------------------------------------------------------------tt----ctattctgtttgcgtcactgtACAGCAGCGAGCCAAAACCCTAAGTGACCACtcacttggctgtcccacagagaagggactaag-gaggcaacaggaacatggggcgggggttggtctggaggtttttgctgtggaccaggggaaagctaaagatggcctgaactaaagtggtggcagtagggagaaaaagagagaagcaatatattccaggta--tttt--agacagattcaactggaCATAATGGTAAAGGATAATCAAG-----AATAGAGCATGGTTTGTACAGGAGGGAGAACGGTGGTGCTATCTCTGTGACAGAGAGG---TGGTAGGACAGGGTGAGTGGGAAGAGGGTTATTCTGAGA---TACTCAGATTCCCTTTTGTGAGTCAAAAGCCTCCATAATACTCTGT----ATTGATTTTTGCCTTCCTttcactcat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     437964 1232 +   1495729 CCAACAGTGTGGCAGAGGTgggacatatcagtgaacaaaacaaatgtggtccgttttttatggagatgacattctagtggggtcactggataaaacaacaagaaaacaaacaaaatcagcacaatgacagaagccaccatggctgggggatgacaggggcaacctctctgggagatacctgcgcagagaactcagggatgagaagtactggccagatgaagagagat---aaggtaaaacaggaaagggcttggtgaaagcggcagaggccagatcgcgcagggctggatatgcatggtaaggagtttgaatttttctccacatacagtggaaagccaccaaggg-tatcaagtaggggcatgttatgTGTGATCCGCTCTACAtgtggctgagactgctgtgtaacctccagagtccactctccccttcctccttttaataatagaa-cccctagagttattgttggtcagatggt--cacctgggaagactacattttccagatcccctatgacaaggtctggtcacgagactaagtttcagccaatggca--tgtgatagaaagcaatgaccataattccgggcattgtccttt--aaaaaagaaaattgctttctacttcctctttccccc--aactgaattttggacatggtggtggtga--gcccaactttgaccacacagcagaggacgacatccctagaagctggtagaagaaccacatggaagtaacccagtcccctggatgagcttatgtacagctactgtgatagctctagaccctg--------cacctctgacctgtt-actgagacagaaataaac------------------------------------------------------------------------tt----ctattctgtttgcgtcactgtACAGCAGCGAGCCAAAACCCTAAGTGACCACtcacttggctgtcccacagagaagggactaag-aaggcaacaggaacatgg---gcaggttggtccggacgtttttgctgtggaccaggggagagctaaagatggcctgaactaaagtggtggcagtagggagaaaaagagagaagcaatatattccaggta--tttt--agacagattcaactggacatactggtaaaggatAATCAAC-----AGCAGAGCATGGTTTGTACAGGAGGGAGAACGGTGGTGCTATCTCTGTGACAGACACG---TGGTAGGACAGGGTGAGTGGGAAGAGGGTTATTCTGAGA---TACTCAGATTCCCTTTTGTGAGTCAAAAGCCTCCATAATACTCTGT----ATTGATTTTTGCCTTCCTttcactcat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     541600 1234 -    863181 ccaacactgtagcagaggtgggacatatcagtgaacaaaacaaatgtggtc-gctttttatggagatgacattctagtggggtcactggataaaacaacaagaaaacaaacaaaatcagcacaatgacagaagccaccatggctgggggatgacaggggcaacctctctgggagatacctgcgcagagaactcagggatgagaagtactggccagatgaagagagat---aaggtaaaacaggaaagggcttggtgaaagcggcagaggccagatcgcgcagggctggatatgcatggtaaggagtttgaatttttctccacgtacagtggaaagccaccaaggg-tatcaagtaggggcatgttatgTGTGATCCGCTCTACAtgtggctgagactgctgtgtaacctccagagtccactctccccttcctccttttaataatagaa-cccctagagttattgctggtcagatggt--cacctgggaagactacattttccagatcccccatgacaaggtctggtcacgagactaagtttcagccaatggca--tgtgatagaaagcaatgaccataattccgggcattgtccttt-aaaaaaagaaaattgctttctacttcctctttccccc--aactgaattttggacatggtggtggtgaccacacagcagaggacacacagcagaggacaacatccctagaagctggtagaagaaccacatggaagtaacccagttccctggatgagcttatgtacagctaccgtgatagctctagaccctg--------cacctctgacctgtt-actgagacagaaataaac------------------------------------------------------------------------tt----ctattctgtttgcgtcactgtACAGCAGCGAGCCAAAACCCTAAGTGACCACtcacttggctgtcccacagagaagggactaag-aaggcaacaggaacatgg---gcaggttggtccggacgtttttgctgtggaccaggggagagctaaagatggcctgaactaaagtggtggcagtagggagaaaaagagagaagcaatatattccaggta--tttt--agacagattcaactggacatactggtaaaggatAATCAAC-----AACAGAACATGGTTTGTACAGGAGGGAGAACGGTGGTGCCATCTCTGTGACAGACAGG---TGGTAGGACAGGGTGAGTGGGAAGAGGGTTATTCTGAGA---TACTCAGATTCCTTTTTGTGAGTCAAAAGCCTCCATAATACTCTGT----ATTGATTTTTGCCTTGCTttcactcat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29688327 1233 -  71996105 ccaacactgtagcagaggtgggacatatcagtgaacaaaacaaatgtggtccgttttttatggaaatgacattctagtggggtcactggataaaacaacaagaaaacaaacaaaatcagcacaatgacagaagccaccatggctgggggatgacaggggcaacctctctgggagatacctgcgcagagaactcagggatgagaagtactggccagatgaagagagat---aaagtaaaacaggaaagggcttggtgaaagcggcagaggccagatcgcgcagggctggatatgcatggtaaggagtttgaatttttctccacgtacagtggaaagccaccaaggg-aatcaagtaggggcatgttatgTGTGATCCGCTCTACAtgtggctgagactgctgtgtaacctccagagtccactctccccttcctccttttaataatagaa-gccctggagttattgctggtcagatggt--cacctgggaagactacattttccagatcccctatgacaaggtctggtcacgagactaagtttcagccaatggca--tgtgatagaaagcaatgaccataattccgggcattgtccttt-aaaaaaagaaaattgctttctacttcctctttccacc--aactgaattttggacatggtggtggtga--gcccgactttgaccacacagcagaggacaacatccctagaagctggtagaagaaccacatggaagtaacccagtcccctggatgagcttatgtacagctactgtgatagctgtagaccctg--------cacctctgacctgtt-actgagacagaaataaac------------------------------------------------------------------------tt----ctattctgtttgcgtcactgtACAGCAGCGAGCCAAAACCCTAAGTGACCACtcacttggctgtcccacagagaagggactaag-aaggcaacaggaacatgg---gcaggttggtccggaggtttttgctgtggaccaggggagagctaaagatggcctgaactaaagtggtggcagtagggagaaaaagagagaagcaatatattccaggta--tttt--agacagattcaactggacatactggtaaaggatAATCAAC-----AACAGAGCATGGTTTGTACAGGAGGGAGAACAGTGGTGCTATCTCTGTGACAGACAGG---TGGTAGGACAGGGTGAGTGGGAAGAGGGTTATTCTGAGA---TACTCAGATTCCCTTTTGTGAGTCAAAAGCCTCCATAATACTCTGT----ATTGATTTTTGCCTTCCTttcactcat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     423836 1232 -    735854 ccaacactgtagcagaggtgggacatatcagtgaacaaaacaaatgtggt-cgctttttatggagatgacattctagtggggtcactggataaaacaacaagaaaacaaacaaaatcagcacaatgacagaagccaccatggctgggggatgacaggggcaacctctctgggagatacctgcgcagagaactcagggatgagaagtactggccagatgaagagAGAT---AAGGTAAAACAGGAAAGGGCTTGGTGAaagcagcagaggccagatcgcgcagggctggatatgcatggtaaggagtttgaatttttctccacgtacagtggaaagccaccaaggg-tatcaagtaggggcatgttatgTGTGATCCGCTCTACAtgtggctgagactgctgtgtaacctccagagtccactctccccttcctccttttaataatagaa-cccctagagttattgctggtcagatggt--cacctgggaagactacattttccagatcccccatgacaaggtctggtcacgagactaagtttcagccaatggca--tgtgatagaaagcaatgaccataattccgggcactgtccttt-aaaaaaagaaaattgctttctacttcctctttccccc--aactgaattttggacatggtggtggtga--gcccaactttgaccacacagcagaggacaacatccctagaagctggtagaagaaccacatggaagtaacccagtcccctggatgagcttatgtacagctaccgtgatagctctagaccctg--------cacctctgacctgtt-actgagacagaaataaac------------------------------------------------------------------------tt----ctattctgtttgcgtcactgtACAGCAGCGAGCCAAAACCCTAAGTGACCACtcacttggctgtcccacagagaagggactaag-aaggcaacaggaacatgg---gcaggttggtctggaggtttttgctgtggaccaggggagagctaaagatggcctgaactaaagtggtggcagtagggagaaaaagagagaagcaatatattccaggta--tttt--agacagattcaactggacatactggtaaaggatAATCAAC-----AACAGAGCATGGTTTGTACAGGAGGGAGAACGGTGGTGCCATCTCTGTGACAGACAGG---TGGTAGGACAGGGTGAGTGGGAAGAGGGTTATTCTGAGA---TACTCAGATTCCTTTTTGTGAGTCAAAAGCCTCCATAATACTCTGT----ATTGATTTTTGCCTTGCTttcactcat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     330388 1233 -   1829203 ccaacactgtagcagaggtgggacatatcagtgaacaaaacaaatgtggtcccttttttatggagatgacattccagtggggtcactggataaaacaacaagaaaacaaacaaaatcagcacaatgacagaagccaccatggctgggggatgacaggggcaacctctctgggagatacctgtgcagagaactgagggatgagaagtactggccagatggagagaggt---aaagtaaaacaagaaagggcttggtgaaagcggcaggggccagattgtgcagggctggatatgcatggtaaggagttcgaatttttctccatgtacagtgaaaagccaccaaggt-tgtcaagtaagggcatgatatgTGTGATCCGCTCTACAtgtggctgagactgctgtgtaacctccagagtccactctctccttcctccttttaacaacagaa-cccctggagttactgctggtcagatggc--cacctgggaagactacattttccagatccctgatgacaaggtctggtcataagactaagttccagccaatggaa--tgtgacagaaagcaatgaccataattccgggcactgtccttt-aaaaaaagaaaattgctttctacttcctctttccccc--aactgaattttggacatggtggtggtga--gcccaactttgaccacacagcagagaacaacatccctagaagctggtagaagaaccacatggaagtaacccagtcccctggatgagcttacgtacagctactgtgatagctctagaccctg--------cacctctgacctgtt-actgaggcagaaataaac------------------------------------------------------------------------tt----ctcttctgtttgcgtcactgtACAGCAGCGAGCCAAAACCCTACGTGACCACtcacttggctgtcccacagagaagggactgag-gaggcaacaggaacacgg---ggaggttggtccggaggcttttgctgtggaccagaggagagctaaagatggcctgaactaaagtggtggcagtagggagaaaaagagagaagcaatatattccaggta--tttt--agaCAGCTTCAGCTGGACATAACGGTAAAGGATAATCAAG-----AATAGAGCATGGTTTGTACAGGAGGGAGAACGGTGGTGCTATCTCTGTGACAGACAGG---TGGTAGGACAGGGTGAGTGGGAAGAGGGTTATTCTGAGA---TATTCAGATTCCCTTTTGTGAGTCAAAAGCCTCCATAAAACTCTGT----ATTGATTTTTGCCTTCCTttcactcat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30519058 1231 + 171630274 ccaacactgtagtataggtgggacattttggtgaacaaaacaaatatggtcccttttatatggagctgacattccagtggggtcattggataaaataacaagaaaacaaacaaaatCAACACAATGACAGAAGCCACCATGGCTGGG-GATGACA-GGGCAACCTCTTTGGGAGACACCTGTACAGAGAATTGAGCAATGAGAAGTACTGGCCAGATGAAGACAGGT---AAGGTAAAACAGGAAAGGGCTTGGCaaaagcagcagaggccagatcatgcagggctgaatatgcatggtaaggagttagaatttcgctccaagtacagtggaaagccaccaaggg-tttcaagtaggggcatgatatgTGTGATCCACTCTACACAtggttgagactgctgtgtatcctccagagtccactctcctcttcctccttttaatagcagaaccccctggagttat---tgatcagatggc--cacccaggaagactacatttcccagatcccccgtgaccaggtctggtcatgagactaagttccaatcaatggga--catattagaaagcaatgaccacaattctgggtattgtccttt-aaaaaaagaaaattgctttctacttcctttttccccc-tagctgaattttgaacctggtgctggtga--gcccaactttgaccacacagcagaggacaacatccctagaagctggcagaagaaccacatgaaagtaacccagtgccctggatgagcttataaacagctactgtgatagctctagaccctg--------cacctctgaactgtt-actgaaacacaaataaat------------------------------------------------------------------------tt----ctaatctatttgtgtcattgtACAGCAGCAAGCCAAAACCCTAAGTAATTACTTCCGtggctgccccacagacaatggactaag-gaagcaacaggaacatgg---gaagactggtccagaggcttttgctgtggaccaggggagagctacagatggcctgaattaggatggcagcagtagggAGAAAAAGAGAGAAGTAGCACGTTCCACGTA--GTTTAGAGACGAATTCACCTGGACATACTGGTCAAGGATAATCAAG-----AACAGGGCATGGTTTGCACAGGAGGGATAAGGGTGGTG----CTGTGTGACAGACAGG---TGGTAGGACAGGGTGAGTGGGAAGAGGGTTATTCTGAGA---TGCTCAGATTCCCTTTTGTGAGTCAAAGGCCTCCATAATACTCTGTATTAATTGA-TTTTGTCTTCCTttcactcat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           322999 1212 +    515838 ccaacactgcagtagaggtgggacattttggtgaacaaaacaaatgtgg----ttttttacggagctgacattccagtggggtcattggataaaacaagaaaaaa------aaaagcaacacaatgacagaagccaccatggctggg-gatgaca-gggcaacctctttgggagacacctgtgcagagaattgagcaatgagaagtactggccagatgaagacaggt---aaggTAAAACAGGAAAGGGCTTGGTGAAAACAGCAGAGGCCAGATCATGCAGGGCTGGATATGCATGGTAAGGAGTTAGAAT-------------AAGTGGAAAGCCACCGAAGG-TTTCAAGTAGGGGCATGATATGTGTGATCCGCTCTACACAtggctgagactgctgtgtagcctccagagtccactctccccttcctccttttaagagcagaactccctggagttat---tggttagatggt--cacccaggaagactgcatttcccagataccctgcgaccaggtctggtcatgagactaagttccaatcaatggga--cacgatagaaagcaatgaccacaattctgggtattgtccttt-aaaaaaagaaaattgctttcttcttcctttttccccc-tagctgaattttggacctggtggtggtga--gcccagctttggccacacagcaggggacaacatccctagaagttggaagaagaaccacatgaaagtaacccagtgccctggatgagcttataaacagctactgtgatagctctagaccctg--------cacctctgaactgtt-actgaaacacaaataaat------------------------------------------------------------------------tt----ctgttctgtctgtgtcactgtCCAGCAGTGAGCCAAAACCCTAAGTAATTACTTACTTGGGTGCCCCACAGGCaatggactaag-gaagcaacaggaacatgg---ggagactggtcgagaggcttttgctatggaccaggggagagctacagatggcctgaactaggatggcagcagtagggagaaaaagagagaagtagcacattccaagta--gtttagagacaaattcacctggacatactggtCAAGGATAATCAAG-----AACAGGGCATGGTTTGCACAGGAGAGATAATGGTGGTGCTACCTGTGTGACAGACAGG---TGGCAGGACAGGGTGAGTGGGAAGAGGGTTATTCTGAAA---TGCTCAGATTCCCTTTTGTGAGTCAAGGGCTTCCATAACACTCTGTATTAATTGA-TTTTGTCTTCCTttcactcat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     953499 1199 -   1771730 ccaacactgtagtagaggtgggacattttggtgaacaaaacaaatgtggtcccttttttatggagctgacattccagtggggtcattggataaaacaacaagaaaacaaacaaaatcaatacaatgacagaAGCCACCATGGCTGGG-GATGACA-GGGCAACCTCTTTGGGAGACACCTGTGCAGAGAATTGAGCAATGAGAAGTACTGGTCAGGAGAAGACAGGT---AAGGTAAAACAGGAAAGGGCTTGGCGAaagcagcagaggccagatcatgcagggctggatatgcatggtaaggagttagaattttgctccacgtacagtggaaagccatcgaggg-tttcaagtaggggcatgacatgTGTCATCCGCTCTACACAtggctgagactgctgtgtatcctccagagtccactctccctttcctccttttaatagcggaaccccctggagttat---gggtcagatggc--cacccaggaagactacatttcccagatcccctgcgaccaggtctggtcatgagactaagttccaatcaatggga--catgatagaaagcaatgaccacaattctgggtattgtcctttaaaaaaaagaaaattgctttcttcttcctttttccccc-tagctgaattttggacctggtggtggtga--gcccaactttgaccacacagcagaggacaacatccctagaagttggtagaagaaccacatgaaagtaacccagtgccctggatgagcttataaacagctactgtgatagctctagaccctg--------cacctctgaactgtt-actgaaacacaaataaat------------------------------------------------------------------------tt----ctgttctgtctgtgccactgtCCAGCAGCGAGCCAAAACCCTAAGTAATTACTTACTTGGCTGCCCCACAGAcaatgg----------------------------------------agaggcttttgctatggaccaggggagagctacaggtggcctgaactaggatggcagcagtagggagaaaaagagagaagtagcacattccaagta--gtttagagacaaattgacctggacatgctggtCAAGGATAATCAAG-----AACAGGGCATGGTTTGCACCGGAGGGGTAACGGTGGTGCTATCTGTGTGACAGACAGG---TGGCAGGACAGGGTGAGTTGGAAGAGGGTTATTCTGAGA---TGCTAAGATTCCCTTTTGTGAGTCAATGGCCTCCATAATACTCTGTATTAATTGA-TTTTGTCTTCCTttcactca-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     137354 1236 -    486031 ccaacactgtagtagaggtgggacattttggtgaacaaaacaaatgtggtcccttttttatggagctgacattccagtggggtcattggataaaacaacaagaaaacaaacaaaatcaacacaatgacagaagccaccatggctggg-catgaca-gggcaacctctttgggagacacctatgcagagaactgagcaatgagaagtactggccagatgaagacaggt---aaggtgaaagaggaaagggcttggcgaaagcagcacaggccagatcacgcagggctggatatgcatggtaaggagttagaattttgctccatgtacagtggaaagccaccaaggg-tttcaagtaggggcatgatatgTGTGATCCACTCTACACAtggctgagactgctgtgtatcctccagagtccactctccccttcctcctttcaatagcagaagcccctggagttat---tggtcagatggc--tacctaggaagactacatatcccagatcccctgcaaccaggtctagtcatgagactaagttccaatcaatgggatttatgatagaaagcaatgaccacaattctgggtattgtccttt-aaaaaaagaaaattgctttctacttcctttttccccc-tagctgaattttgaacctggtggtggtga--gcccaactttgaccacacagcagaggacaacatccctagaagttggtagaagaaccacatgaaagtaacccagt-------aagcgcttataaacagctactgtgatagctctagaccctg--------cacctctgaactGTT-ACTGAGACACAAATAAAT------------------------------------------------------------------------TT----CTGTTCTGTCTGTGTCACTGTCCAGCAGCAAGCCAAAACCCTAAGTAATTACttacttggctgccccacagagaatggactaag-gaagtaacaggaacatgg---ggagactggtccagaggcttttgctatggaccaggggagagctacagatggcctgaactaggatggcagcagtggggagaaaaagagagaagcagcatgttccaagta--gtttggagacaaattcacccggacatactggtCAAAGATAATCAAGAACACAACACGGCATGGTTTGCACAGGAGGGATAATGGTGGTGCTAACTGTGTGACAGACAGG---TGGCAGGACAGGGTGAGTGGGAAGCGGGTTATTCTGAGA---TGCTCAGATTCCCTTTTATGAGTCAAAGGCCTCCATAATACTCTGTATTAATTTATTTTTGTCTTCCTttcactcat
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           377932 1238 +  18854210 caaac--tgcattagaggcggatga--tcagtgaacaaaacaaatgtgaccccttccttatggggctgacattctagagagagcactggataa---aaaaagaaaaca----------------------aaGCCACTAGGGGTGGGGAACAAAG-----AGCCTATTGGGGAGACACTTGTGCTAAGAACACAAGA-----AAGTACCGgccaggtaaagagtggtaagaaggtgaaacaggaagggg-ttagtgaaagaagcaggggccagatcatgcagggctggatttgcatggtgaggagtttgaaatttgttccacagacagtggatagccactaaaggatttcaagcaagggaatgatatccacgatctgctttCCAtgttgtggagattgctaagtatcctccagaatccattctcccct---tctttttaagaatggaa-cccctggaatgataaatgatcagatggtcacaccaaggaagactttattttccagattccctgcaaccagttctgatcatgtgactaagttccagccaagggaa------------agcaactacaat--ttctggggcttatcctat-aaaa----aaaatggctttctactttctcttttccctctggctgaattttggacatgGCGATGGTAA--ACCTGGCCTTGATCAC---------------ATCCCTAGAAGTTAG-------------TGGAAGTAACTCAGTTCCCTGGGTGAGCATCCAGATAGAAACCATGACAGCTCTAGACCCCACCGCCTGCCACCTCTGAACTGTT-ACAGAGCTAGAAATAAGCAGCATCTCAAAGAATCCCTTCACAAGTCACCCTGTCCTAGCTGGGACCAGGAAGGATGTACCAGGAAGAATGTTCCAGCTGTTTTGTTTAAGACACTCTACAGAAGCTAGCCAAAATCCTAAGTGACCAatcacttggctgactagtagagaatggattaagtgaggtaac----acaagg---gcaggccagtctggaggctgttgctgcagaccagaggaaagataaagatgtcctaaacta----ggtggcaatggaga-caaaagacagaagcagcgcatcccagctatgtttttgagacagattcaactggacatattggtcaaggataatcaag-----ggcaggtcatggcttgagtagacgggaagatggtggtgctatctgtgtaacagggaagacagggtagagcaggGTGAGTGTGCAGGGA------TTGAGATGCTGCTTAGATTTCCTTTTGTGAGTCAAAAGCCTCAAAAATACTCTGTACTAATTGATTTTTGCCTTCCTTTCACTGGT
i otoGar3.GL873550         C 0 I 292
e micMur3.chr6               428372  741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     386675 2450 -   1411461 I
e canFam3.chr35            26389597 1266 +  26524999 I

a score=4356684.000000
s hg38.chr6_GL000254v2_alt  1535365 429 +   4827813 tccacaaatatttattaagtgcttcctaggtaccaggcactcatctagaagcctcagaacagtt-aaaaaaaaaaaaaaaa----------agagagagagagacaaatccctacttctgtagagctgacattctagcagggggaagcagac----aataatcaatgtagcaaatacatcatactacgtgagtgataacgcaccacgggaaaagag-------agcagagtgaagggggatgggagcaggggccggtggggtgcaggctggcttcctggaga-gggtgagatttgggaaaCAAATGGAATTAACAAATTGTGGCTGCTGATGACTGCTTCCAAAAGTTTGGGAAGAGTTGTGAGCTTTACTCCAGAGGAATAAGACAAGAAGTCAGAGGCACATCCCAACCCCCCGCTATGAAGC----AAGTGCCCAGAGACTGGTAG-CACATTT
s panTro5.chr6             30405244 423 + 175400573 tccacaaatatttattaagtgcttcctaggtaccaggcactcatctagaagcctcagaacagtt-aaaaaaaaaaga---------------gagagagagagacaaatccctacttctgtagagctgacattctagcagggggaagcagac----aataatcaatgtagcaaatacatcatactacgtgagtgata-cgcaccacgggaaaagag-------agcagagtgaagggggatgggagcaggggccggtggggtgcaggctggcttcctggaga-gggtgagatttgggaaaCAAATGGAATTAACAAGTTGTGGCTGCTGATGACTGCTTCTAAAAGTTTGGGAAGAGTTGTGAGCTTTACTCCAGAGGAATAAGACAAGAAGTCAGAGGCACATCCCAACCCCCCGCTATGAAGC----AAATGCCCAGAGATTGGTAG-CACATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30639534 421 + 173848474 tccacaaatatttattaagtgcttcctaggtaccaggcactcatctagaagcctcagaacagtt-aaaaaaaaaa-----------------gagagagagagacaaatccctacttctgtagagctgacattctagcagggggaagcagac----aataatcaatgtagcaaatacatcatactacgtgagtgata-tgcaccacgggaaaagag-------agcagagtgaagggggatgggagcaggggccggtggggtgcaggctggcttcctggaga-gggtgagatttgggaaaCAAATGGAATTAACAAGTTGTGGCTGCTGATGACTGCTTCTAAAAGTTTGGGAAGAGTTGTGAGCTTTACTCCAGAGGAATAAGACAAGAAGTCAGAGGCACATCCCAACCCCCCGCTATGAAGC----AAATGCCCAGAGATTGGTAG-CACATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     347302 437 +   2037526 tccacaaatatttattaagtgcttcctaggtaccaggcactcatctagaagcctcagaacagtt-aaaaaaaaaaaaaaaaaagagag-agagagagagagagacaaatccctacttctgtagagctgacattctagcaggggaaagcagac----aataatcaatgtagcaaatatatcatactacgtgagtgata-cgcaccacgggaaaagag-------agcagagtgaagggggatgggagcaggggccagtggggtgcaggctggcttcctggaga-gggtgagatttgggaaaCAAATGGAATTAACAAATTGTGGCTGCTGATGACTGCTTCCAAAAGTTTGGGAAGAGTTGTGAGCTTTACTCCAGAGGAATAAGACAAGAAGTCAGAGGCACATCCCAACCCCCCGCTATGAAGC----AAATGCCCAGAGACTGGTAG-CACATTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75010581 429 + 122973662 tccacaaatatttattaagtgcttcctaggtaccaggcactcatctagaagcctcagaacaatt-aaaaaaaaaaaaaaaaga---------gagagagagagacaaatacctacttctgtagagctgacattctggcagggggaagcagac----aataatcaatgtagcaaatacatcagactatgtgagtgata-cgcaccacgggaaaagag-------agcagagtgaagggggatgggagcaggggccggtggggtgcaggctggcttcctggaga-gggtgagatttgggaaaCAAATGGAATTAACAAATTGTGGCTGCTGATGACTGTTTCTGAAAGTTTGGGAAGAGTTGTGAGCTTTACTCCAGAGGAGTAAGACAAGAAGTCACAGGCACATCCCAATGCCCCGCTGTGAAGC----AAATGCCCAGAGACTGGTAG-CAAATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30900761 437 + 172585720 tccacaaatatttattaagtgcttcctaggtaccaggcactgatctagaagcctcagaacagtt-aaaaaaaaaaaaaaaaaaaaa---aaagagagagagagacaaatccccacttctgtagagctgacattctagcagggggaagcagac----aataatcaatgtagcaaatacatcacactacgtgagtgata-cgcaccacgggaaaagag-------agcagagtgaagggggatgggagcaggggccggtggggtgcaggctggcttcctggaga-gggtgagattcaggaaaCAAATGGAATTAACAAATTGTGGCTGCTGATGACTGCTTCAGAAAGTTTGGGAAGAGCTGT--GTTTTACTCCAGAGGAGCAAGACACGAAGTCAGAGGCACATCCCGACCCCGCACTATGAAGCAACTAAATGCCCAGAGACTGGTAG-CAAATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30190322 439 - 170955103 tccacaaatatttattaagtgcttcctaggtaccaggcactgatctagaagcctcagaacagtt-aaaaaaaaaaaaaaaaaaaaa---aaaaagagagacagacaaatccccacttctgtagagctgacattctagcagggggaagtagac----aataatcaatgtagcaaatacatcacactacgtgagtgata-cgcaccatgggaaaagag-------agcagagtgaagggggatgggagcaggggccggtggggtgcaggctggcttcctggaga-gggtgagattCAGGAAACAAATGGAATTAACAAATTGTGGCTGCTGATGACTGCTTCAGAAAGTTTGGGAAGAGTTGTGAGTTTTACTCCAGAGGAGCAAGACAAGAAGTCAGAGGCACATCCCGACCCAGCACTATGAAGCAACTAAATGCCCAGAGACTGGTAG-CAAATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     439196 440 +   1495729 tccacaaatatttattaagtgcttcctaggtaccaggcactgatctagaagcctcagaacagtt-aaaaaaaaaaaaaaaaaaaaagagagagagagagagagacaaatccccacttctgtagagctgacattctagcagggggaggtagac----aataatcaatgtagcaaatacatcacactacgtgagtgata-cgccccatgggaaaagag-------agcagagtgaagggggatgggagcaggggccggtggggtgcaggctggcttcctggaga-gggtgagattcaggaaaCAAATGGAATTAACAAATTGTGGCTGCTGATGACTGCTTCAGAAAGTTTGGGAAGAGCTGT--GTTTTACTCCAGAGGAGCAAGACAAGAAGTCAGAGGCACATCCCGACCCCGCACTATGAAGCAACTAAATGCCCAGAGACTGGTAG-CAAATTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     542834 430 -    863181 tccacaaatatttattaagtgcttcctaggtaccaggcactgatctagaagcctcagaacagtt-aaaaaaaaaaaaaaaaa-------agagagagagagagacaaatccccacttctgtagagctgacattctagcagggggaagcagac----aataatcaatgtagcaaatatatcacactacgtgagtgata-cgcac---gggaaaagag-------agcagagtgaagggggatgggagcaggggccggtggggtgcaggctggcttcctggaga-gggtgagattcaggaaaCAAATGGAATTAACAAATTGTGGCTGCTGATGACTGCTTCAGAAAGTTTGGGAAGAGCTGT--GTTTTACTCCAGAGGAGCAAGACAAGAAGTCAGAGGCACATCCCGACCCCGCACTATGAAGCAACTAAATGCCCAGAGACTGGTAG-CAAATTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29689560 434 -  71996105 tccacaaatatttattaagtgcttcctaggtaccaggcactgatctagaagcctcagaacagttaaaaaaaaaaaaaaaaag-------agagagagagagagacaaatccccacttctgtagagctgacattctagcagggggaagcagac----aataatcaatgtagcaaatacatcacactacgtgagtgata-cgcaccatgggaaaagag-------agcagagtgaagggggatgggagcaggggccggtggggtgcAGGCTGGCTTCCTGGAGA-GAGTGAGATTCAGGAAACAAATGGAATTAACAAATTGTGGCTGCTGATGACTGCTTCAGAAAGTTTGGGAAGAGTTGT--GTTTTACTCCAGAGGAGCAAGACAAGAAGTCAGAGGCACATCCCAACCCCGCACTATGAAGCAACTAAATGCCCAGAGACTGGTAG-CAAATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     425068 433 -    735854 tccacaaatatttattaagtgcttcctaggtaccaggcactgatctagaagcctcagaacagtt-aaaaaaaaaaaagagag-------agagagagagagagacaaatccccacttctgtagagctgacattctagcagggggaagcagac----aataatcaatgtagcaaatatatcacactacgtgagtgata-cgcaccacgggaaaagag-------agcagagtgaagggggatgggagcaggggccggtggggtgcaggctggcttcctggaga-gggtgagattcaggaaaCAAATGGAATTAACAAATTGTGGCTGCTGATGACTGCTTCAGAAAGTTTGGGAAGAGTTGT--GTTTTACTCCAGAGGAGCAAGACAAGAAGTCAGAGGCACATCCCAACCCCGCACTATGAAGCAACTAAATGCCCAGAGACTGGTAG-CAAATTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     331621 426 -   1829203 tccacaaatatttattaagtgcttcctaggtaccaggcactgatctagaagcctcagaacagtt-taaaaaaa----------------caaaagagagagagacaaatccccacttctgtagagctgacattctagcagggagaagcagac----aataatcaatgtagcaaatacatcacactacgtgagtgata-cgcaccacgggaaaagag-------agcagagtgaagagggatgggagcaggggccggtggggtgcaggctggcttcctggaga-gagtgagattcgggAAACAAATGGAATTAACAAATTGTGGCTGCTGATGACTGCTTCAGAAAGTTTGGGAAGAGTTGTGAGTTTTACTCCAGAGGAGCAAGACAAGAAGTCAGAGGCACATCGTGACCCCCCACTATGAAGCAACTAAATGCCCAGAGACTGGTAG-CAAATTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30520289 408 + 171630274 tccacaaatattaattaagtgggtcctaggtaccaggcactgatctagaagcctcgaaacagtc-aaaaaaaa--------------------------agcaacaaatctctacttctgtagagctgacattctagcagggggaagcaaac----aataatcaacgtagcaaatacatcacactacgtgagtgata-agcaccacaggaaaagag-------agcagagtgacggggga-ggtagc-agggctggtgaggTACAGGC-AGCTTCCTTGAGA-GGGTGAGATTTGGGAAACAAATGGTATTAACAAATTGTAGCTGCTGATGAATGCTTCAGAAAGTTTGGGAAGAATTGTGAGCTTTACTCCAGAGGAGCAAGATAAGAAGTCGGAAGTACATCCCAAC-CCCCACTATGAAGC----AAATGCCCAGACATTGGTTG-CAAATTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           324211 411 +    515838 tccgcaaatattaattaagtgggtcctaggtaccaagcactgatctagaagcctcaaaacagtc-aaaaaaaa----------------aaaaaaagacagcaacaaatc------cctgtagagctgacattctagcagggggaagcagac----aataatcaatgcagcaaatatatcatactacgtgagtgata-agcaccacaggaaaagag-------agcagagtgacggggga-gggagcgggggctggtggggtgcaggc-agcttccttgaga-gggtgagatttgggaaaCAAATGGAATTAGCAAATTGTGGCTGCTGATGAATGCTTCAGAAAGTTTGGGAAGAATTGTGAGCTTTACTCCAGAGGAGCAAGACAAGAAGTCGGAGGTACATCCCAAC-CCCCACTCTGAAGC----AAATGCCCAG--ATTGGTTG-CAAATTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     954698 423 -   1771730 tccacaaatattaattaagtgggtcctagataccgagcactgatctagaagcctcaaaacagtc-aaaaaaaa--aaaag---------aaaaaaagacagcaacaaatccctacttctgtagagctgacattctagcagggagaagcagac----aataatcaatgcagcaaatacatcatactacgtgagtgata-agcaccacaggaaaagag-------agcagagtgaagaggga-gggagcaggagccggtggggtgtaggc-agcttccttgaga-gggtgagatttgggaaaCAAATGGAATTAACAAATTACGGCTGCTGATGAATGCTTCAGAAAGTTTGGAAAGAATTGTGAGCTTTACTCCAGAGGAGCAAGACAAGAAGTAGGAGGTACATCCCAA--CCCCACTATGAAGC----AAATGCCCAGA-TTTGGTTGCCAAATTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     138590 426 -    486031 tccacaaatattaattaagtgggtcctaggtaccaggcactgatgtagaagcctcaaaacagtc-aaaaaaaaaaaaaaa---------aaaaaaagacagcaacaaatccctgcttctgtagagctgacattctagcagggggaagcagac----aataatcaatgtagcaaatacatcatactacgtgagtgata-agcaccacaggaaaagag-------agcagagtgatggggga-gggagcaggggctagtggggtgcaggc-agcttccttgaga-gggtgagatttgggaaatgaATGGAATTAACAAATTGTGGCTGCTGATGAATGCTTCAGAAAGTTTGGGAAGAATTGTGAGCTTTACTCCAGAGAAGCAAGACAAAAAGTCGGAGGCACATCCCAAC-CCCCACTATGAAGC----AAATGCCCAGAGACTGGTTG-CAAATTT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           379462 403 +  18854210 tccacagatatttattaagtgcttcctatgtaccaggcactaatctagac-------agcagtg-aaaaaaa-----------------aaataaagagatacacaaatccttaccttcatagagctgacattctaccaaggggaaacagacaaaaaacaatcaatgtaacaaatgcatcatattatgtgaatgata-agcactatgaaaaaaaagagagttaagtagaatgaaggggga------------------gggagCAGGTTGGCATCCTTAACAGGGGTGAGATTTGGGAATCTAATAGAATCACCAAATTGTGGCTGCTGCTGATGGCTTCAGAAAGTTTAGGGAGAACTGCAGGCTTTGCTCCTCAGG----AGATAAGAAACCAGAGCTACATCCTGCC-CCCTACCATAAAGC----AACTGCCCAGAGCCTGGTTG-CAAGTTT
i otoGar3.GL873550         I 292 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     386675 2450 -   1411461 I
e canFam3.chr35            26389597 1266 +  26524999 I

a score=1250246.000000
s hg38.chr6_GL000254v2_alt  1535794 112 +   4827813 CTGGCCAAG----TCCTCTAACATGCCCCTCAAAACATGTAAGTCCA-AGGCGGCTTCAGAGGACA-GGCAACAAAACAGACAGTGTGTCCTGACAGCTCTGCTGACAAAGGTGGCAT
s panTro5.chr6             30405667 112 + 175400573 CTGGCCAAG----TCCTCTAACATGCCCCTCAAAACATGTAAGTCCA-AGGCGGCTTCAGAGGACA-GGCAACAAAACagacagcgtgtcctgacagctctgctgacaaaggtggcat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30639955 112 + 173848474 CTGGCCAAG----TCCTCTAACATGCCCCTCAAAACATGTAAGTCCA-AGGCGGCTTCAGAGGACA-GGCAACAAAACagacagcgtgtcctgacagctctgctgacaaaggtggcat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     347739 112 +   2037526 CTGGCCAAG----TCCTCTAACATGCCCCTCAAAACATGTAAGTCCA-ACGCGGCTTCAGAGGACA-GGCAACAAAACAGACAGCGTGTCCTGACAGCTCTGCTGACAAAGGTGGCAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75011010 112 + 122973662 CTGGCCAAG----TCCTCTAACATGCCCCTCAAAACATGTAAGTCCA-AGGCAGCTTCAGAGGATA-GGCAACAAAACAGACAGTGTGTCCTGACAGCTCTGCTGACAAAGGTGGCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30901198 112 + 172585720 CTGGCCAAG----TCCTCTAACACGCCCCTCAACACATGTAAGTCCA-AGGCAGCTTCAGAGGACA-GGCAACAAAACAGACAGCGTGTCCTGACAGCTCTGCTGACAAAGGTGGCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30190761 112 - 170955103 CTGGCCAAG----TCCTCTAACACGCCCCTCAACACATGCAAGTCCA-AGGCAGCTTCAGAGGACA-GGCAACAAAACagacagcgtgtcctgacagctctgctgacaaaggtggcat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     439636 112 +   1495729 CTGGCCAAG----TCCTCTAACACGCCCCTCAACACATGTAAGTCCA-AGGCAGCTTCAGAGGACA-GGCAACAAAACAGACAGCGTGTCCTGACAGCTCTGCTGACAAAGGTGGCAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     543264 112 -    863181 CTGGCCAAG----TCCTCTAACACGCCCCTCAACACATGTAAGTCCA-AGGCAGCTTCAGAGGACA-GGCAACAAAACAGACAGTGTGTCCTGACAGCTCTGCTGACAAAGGTGGCAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29689994 112 -  71996105 CTGGCCAAG----TCCTCTAACATGCCCCTCAACACATgtaagtcca-aggcagcttcagaggaca-ggcaacaaaacagacagcgtgtcctgacagctctgctgacaaaggtggcat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     425501 112 -    735854 CTGGCCAAG----TCCTCTAACACGCCCCTCAACACATGTAAGTCCA-AGGCAGCTTCAGAGGACA-GGCAACAAAACAGACAGCGTGTCCTGACAGCTCTGCTGACAAAGGTGGCAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     332047 112 -   1829203 CTGGCCAAG----TCCTCTAACACGCCCCTCAACACATGTAAGTCCA-AGGCAGCTTCAGAGGACA-GGCAACAAAACAGACAGCGTGCCCTGACAGCTCTGCTGACAAAGGTGGCAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30520697 113 + 171630274 CTGGCAAAG----TCCTCTAACATGCCCCTCAAAATATTTAAGTTCA-AGGCAGCTTCACAGAACGGGGCAACAAAACAGACAGTGTGTCCTGACAGCTCTGCTGACAAAGATGGCAT
i calJac3.chr4             C 0 I 224
s saiBol1.JH378341           324622 113 +    515838 CTGGCAAAG----TCCTCTAACATGCCCCTCAAAACAGTTAAGTTCA-AGGCAGCTTCAGAGGACAGGGCAACAAAACAGACAGTGCGTCCTGACAGCTCGGCTGACAAAGGTGGCAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     955121 111 -   1771730 CTGGCAAAG----TCCTCTAACATGCACCTCAAAACATTTAAGTTCA-AGGCAGCTTCAGAGGACAGGGCAACAAAACAG--GGCAACTCCTGACAGCTCTGCTGACAAAGGTGGCAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     139016 113 -    486031 CCGGCCAAG----TCCTCTAACATGCCCCTCAAAACATTtaagttca-aggcagcttcagaggacagggcaacaaaacagacagcgtgtcctgacagctctgctgacaaaggtggcat
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           379865 100 +  18854210 CTGGCAAAT----CCCTCTAATGTGCCCATCAAAAC----AAGGCCA-AGGCAGCATCAGGGAACAGGGTAACAAGGCAGGCA---------AATAGCTTTGCTGAGAAAGGTAGCAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26390863 107 +  26524999 CTGGCCCAGCACATCCTTCCCTCTGTCCCTGAAAGC-TGTAAACCCACAGGCAGCTTCACAGGGTGGGGCAAGAACTCAGA-GCCGTGTCTCCGGGGGCATGCTGGCAA---------
i canFam3.chr35            I 1266 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     386675 2450 -   1411461 I

a score=4134132.000000
s hg38.chr6_GL000254v2_alt  1535906 399 +   4827813 AAAAGAGCAAATGAATGGAGCAGTAGCTGGAGTGTGGGCCAGAGGCCCATTTGGGCATATTTCCTGACATGGAAGTTCCTAGAACAGTAGAAAGGGAGAG-AATCATACAGGAGAAAGAAGAGTCCTCTAAAGGTTAAAGGTTGTGAGCAGCCCAGAGAGGGT-GGGTCCCGAGAGCCAGGGCAGGGCTGG-CCCTGCG--GAGAAGAGGCTGAAAGACTCAGGAG--CCCCCAT---CCACAGCCACATACAGGGCCTCTGGAGGGAAGTGATCCGCCCAAGTCTCCTGGAGGACTCTTCT---CACC--CAAGACATCTGAAGCTGTCATGAAACAGGC----AGAGCCGAGCAGTGGGGCTGCGGCAATGAGTCATGGCAAGCTCCCGGAGGGGATGTGCCCGGTTACTAACAGA
s panTro5.chr6             30405779 399 + 175400573 aaaagagcaaatgaatggagcagtagctggagTGTGGGCCAGAGGCCCAGTTGGGCATATTTCCTGACATGGAAGTTCCTAGAACAGTAGAAAGGGAGAG-AATTATACAGGAGAATGAAAAGTCCTCTAAAGGTTAAAGGTTGTGAGCAGCCCAGAGAGGGT-GGGTCCCGAGAGGCAGGGCAGGGCTGG-CCCTGCG--GAGAAGAGGCTGAAAGACTCAGGAG--CCCCCAT---CCACAGCCACGTACGGGGCCTCTGGAGGGAAGTGATCCACCCAAGTCTCCTGGAGGACTCTTCT---CACC--CAAGACATCTGAAGCTGTCATGAAACAGGC----AGAGCCGAGCAGTGGGGCTGCGGCAATGAGTCATGGCAAGCTCCCGGAGGGGATGTGCCCGGTTACTAACAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30640067 399 + 173848474 aaaagagcaaatgaatggagcagtagctggagTGTGGGCCAGAGGCCCAGTTGGGCATATTTCCTGACATGGAAGTTCCTAGAACAGTAGAAAGGGAGAG-AATTATACAGGAGAATGAAAAGTCCTCTAAAGGTTAAAGGTTGTGAGCAGCCCAGAGAGGGT-GGGTCCCGAGAGCCAGGGCAGGGCTGG-CCCTGCG--GAGAAGAGGCTGAAAGACTCAGGAG--CCCCCAT---CCACAGCCACGTACGGGGCCTCTGGAGGGAAGTGATCCACCCAAGTCTCCTGGAGGACTCTTCT---CACC--CAAGACATCTGAAGCTGTCATGAAACAGGC----AGAGCCGAGCAGTGGGGCTGCGGCAATGAGTCATGGCAAGCTCCCGGAGGGGATGTGCCCGGTTACTAACAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     347851 399 +   2037526 AAAAGAGCAAATGAATGGAGCAGTAGCTGGAGTGTGGGCCAGAGGCCCAGTTGGGCATATTTCCTGACATGGAAGTTCCTAGAACAGTAGAAAGGGAGAG-AATTATACAGGAGAAAGAAGAGTCCTCTAAAGGTTAAAGGTTGTGAGCAGCCCAGAGAGGGT-GGGTCCCGAGAGCCAGGGCAGGGCTGG-CCCTGCG--GAGAAGAGGCTGAAAGACTCAGGAG--CCCCCAT---CCACAGCCACATACGGGGCCTCTGGAGGGAAGTGATCCGCCCAAGTCTCCTGGAGGACTCTTCT---CACC--CAAGACATCTGAAGCTGTCATGAAACAGGC----AGAGCCGAGCAGTGGGGCTGCGGCAATGAGTCATGGCAAGCTCCCGGAGGGGATGTGCCCGGTTACTAACAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75011122 400 + 122973662 AAAAGAGCAAATGAATGGAGCAGCAGCTGGAGTGGGGGCCAGAGGCCCAACTGGGCATATTTCCTGACATGGAAGTTCCTAGAACAGTAGAAAGGGAGAG-AATCATACAGGAGAAAGAAGAGTCCTCTAAAGGTTAAAGGTTGTGAGCAGCCCAGAGACGGTGGGGTCCCGAGAGCCACGGCAGGGCTGG-CCCTGCG--GAGAAGAGGCTGAAAGACTGAGGAG--CCCCCAT---CCACAGCCACATCCCGGGCATCTGGAGGGAACAGATCAGCCCAAGTCTCGTGGAGGACTCTTGT---CACT--TAAGACATAGGACGCTGTCACGAAACAGGC----AGAGCCGAGCAGTGGGGATGCGGCAATGAGTCATGGCAAGCTCCCGGAGGGAATGAGACCGGTTAACAACAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30901310 400 + 172585720 AAAAGAGGAAATGAATGGAGCAGTAGGTAGAGTGGGGGCCAGGGGCCCAACTTGGCATATTTCCTGACATGAAAGTTCCTACAGCAGTAGAAAGGGAGAG-AATCACACAGGAGAAAGAAGAGTCCTCTAAAGGTTAAAGGTTGTGAGCAGTCCAGAGAGGGTGGGGTCCCAAGAGCCAGGGCAGGGCTGG-CCCTGTC--GAGGAGAGGCTGAAAGACTGAGAGG--CCCCCAT---CCACAGCCACATATGGGGCCTCTGGAGGGAAGTGATCAGCCCACGTCTCCTGGAGGACTCTTCT---CACC--CAAGACATCTGAGGCTGTCATGAAACAGGC----AGAGCCGAGCAGTGGGGCCACAGCAATGAGTCATGGCAAGCTCCCGGAGGGGATGTGCCCGGTTACTAACAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30190873 401 - 170955103 aaaagagcaaatgaatggagcagtagctagagtgagGGCCAGGGGCCCAACTGGGCATATTTCCTGACATGAAAGTTTCTAGAACAGTAGAAAGGGACAGAAATCACACAGGAGAAAGAAGAGTCCTCTAAAGGTTAAAGGTTGTGAGCAGCCCAGAGAGGGTGGGGTCCCAAGAGCCAGGGCAGGGCTGG-CCCTGTT--GAGAAGAGGCTGAAAGACTGAGAGG--CCCCCAT---CCACAGCCACATATGGGGCCTCTGGAGGGAAGTGATCAGCCCACGTCTCCTGGAGGACTCTTCT---CACC--CAAGACATCTGAGGCTGTCATGAAACAGGC----AGAGCCGAGCAGTGGGGCCACAGCAATGAGTCATGGCAAGCTCCCGGAGGGGATGTGCCTGGTTACTAACAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     439748 400 +   1495729 AAAAGAGGAAATGAATGGAGCAGTAGGTAGAGTGGGGGCCAGGGGCACAACTGGGCATATTTCCTGACATGAAAGTTCCTACAGCAGTAGAAAGGGAGAG-AATCACACAGGAGAAAGAAGAGTCCTCTAAAGGTTAAAGGTTGTGAGCAGTCCAGAGAGGGTGGGGTCCTAAGAGCCAGGGCAGGGCTGG-CCCTGTC--GAGGAGAGGCTGAAAGACTGAGAGG--CCCCCAT---CCACAGCCACATATGGGGCCTCTGGAGGGAAGTGCTCAGCCCACGTCTCCTGGAGGACTCTTCT---CACC--CAAGACATCTGAGGCTGTCATGAAACAGGC----AGAGCCGAGCAGTGGGGCCACAGCAATGAGTCATGGCAAGCTCCCGGAGGGGATGTGCCCGGTTACTAACAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     543376 398 -    863181 AAAAGAGCAAATGAATGGAGCAGTAGGTAGAGTGGGGGCCAGGGGCCCAACTGGGCATATTTCCTGACATGAAAGTTCCTACAGCAGTAGAAAGGGAGAG-AATCACACAGGAGAAAGAAGAGTCCTCTAAAGGTTAAAGGTTGTGAGCAGTCCAGAGAGGGTGGGGTCCCAAGAGCCAGGGCAGGGCTGG-CCCTGTC--GAGGAGAGGCTGAAAGACTGAGAGG--CCCCCAT---CCACAGCTACATATGGGGCCTCTGGAGGGAAGTGCTCAGCCCACGTCTCCTGGAGGACTCTTCT---CACC--CAAGACATCTGAGGCTGTCATGAAACAGGC----AGAGTCGAGCAGTGGGGCCACAGGAATGAGTCATGGCAAGCTCCCGGAGGGGATGTGCCCAGTTACTAAC--A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29690106 400 -  71996105 aaaagagcaaatgaatggagcagtaggtagagtgggGGCCAGGGGCCCAACTGGGCATATTTCCTGACATGAAAGTTCCTACAGCAGTAGAAAGGGAGAG-AATCACACAGGAGAAAGAAGAGTCCTCTAAAGGTTAAAGGTTGTGAGCAGTCCAGAGAGGGTAGGGTCCCAAGAGCCAGGGCAGGGCTGG-CCCTGTA--GAGGAGAGGCTGAAAGACTGAGAGG--CCCCCAT---CCACAGCCACATATGGGGCCTCTGGAGGGAAGTGCTCAGCCCACGTCTCCTGGAGGACTCTTCT---CACC--CAAGACATCTGAGGCTGTCATGAAACAGGC----AGAGTCGAGTAGTGGGGCCACAGCAATGCGTCATGGCAAGCTCCCGGAGGGGATGTGCCTGGTTACTAACAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     425613 400 -    735854 AAAAGAGTAAATGAATGGAGCAGTAGGTAGAGTGGGGGCCAGGGGCCCAACTGGGCATATTTCCTGACATGAAAGTTCCTACAGCAGTAGAAAGGGAGAG-AATCACACAGGAGAAAGACGAGTCCTCTGAAGGTTAAAGGTTGTGAGCAGTCCAGAGAGGGTGGGGTCCCAAGAGCCAGGGCAGGGCTGG-CCCTGTC--GAGGAGAGGCTGAAAGACTGAGAGG--CCCCCAT---CCACAGCTACATATGGGGCCTCTGGAGGGAAGTGATCAGCCCACGTCTCCTGGAGGACTCTTCT---CACC--CAAGACATCTGAGGCTGTCATGAAACAGGC----AGAGTCGAGCAGTGGGGCCACAGCAATGAGTCATGGCAAGCTCCCGGAGGGGATGTGCCCGGTTACTAACAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     332159 402 -   1829203 AGAAGAGCAAATGAATGGAGCAGTAGCTAGAGTGGGGGCCAGGGGCCCAATTGGGCATATTTCCTAACGTGAAAGTTCCTACAACAGTAGAAAGGGAGAG-AATCACACAGGAGAAAGAAGAGTCCTCTAAAGGTTAAAGGTTGTGAGCAGACCAGAGAGGGTGGAGTCCCAAGAGCCAGGGCAGGGCTGG-CCCTGCC--GAGAACAGGCTGAAAGACTGAGAGGCCCCCCCAT---CCACAGCCACATATGGGGCCTCTGGAGGGAAGTGATCAGCCCACGTCTCCTGGAGGACTCTTCT---CACC--CAAGACATCTGAGGCTGTCATGAAACAGGC----AGAGCCGAGCAGTGGGGCCACGGCAATGAGTCATGGCAAGCTCCCGGAGGGGATGTGCCCAGTTACTAACAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30521034 395 + 171630274 aaaaGAGCAAATGAATGGAGCAGTAGCTGGAGTGGGGGCCAGAGGCCCAACTGGGCATATTTTCTGACATGGAAGTTTCCAGAACAGTAGAAAGGGAGAA-AATCATAGAGGAGAAAGAAGAGTCTC-------TTAAA-GTTGCGAGCAGCCCAGAGAGGGTGGGGTCCTGAGAGCCAGGGCAGGGCTGG-CCCTGCCAAGAGAAGAGGCCAAAAGACTGAGGAG--CCCCCAT---CCACAGCCACATACAGGGCCTCTGGAGGGAAGTGATCAGCCCAAGGCTCCTGGAGGACTCTTCT---CACC--CAAGACATCTGAAGCTGTCATGAAACAAGCAAAGAGAGCCGAGCAGTGGGGCCACAGCAATGAGTCACGGCAAGCTCTGGCAGGGGATGCACCTGGTTACTAAC---
i calJac3.chr4             I 224 C 0
s saiBol1.JH378341           324735 402 +    515838 AAAAGAGCAAATGAATAAAGCAGTAGCTGGAATGGCGGCCAGAGGCCCAGCTGGGCATATTTCCTGACGCGGAAGTTCCCAGAACAGTAGAAAGGGGGAG-AATCATATAGGAGAAACAAGAGTCCTTTAAAGGTTAAA-GTTGTGAGCAGCCCAGAGAGGGTGGGGTCCTGAGAGCCAGGGCAGGGCTGG-TCCTGCCAAAAGAAGAGGCCAAAAGACTGAGGAG--CCCCCAT---CCACAGCCATATACAGGGCCTCTGGAGGGAAGTGATCAGCCCAAGGCTCCTGGAGGACTCTTCT---CACC--CAAGACATCTGAAACTGTCATGAAACAGGCAATGAGAGCCAAGCAGTGGGGCCACAGTAATGAGTCATGGCATGCTCTGGCAGGGGATGCACCTGGTTACTAAC---
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     955232 401 -   1771730 AAAAGAGCAAATGAATGGAGCAGTAGCTGGAGTGGTGGCCAGAGGCCCAGCTGGGCATATTTCCTGACATGGAAGTTCCCAGAACAGTAGAAAGGG-GAG-AATCATATAGGAGAAGCAAGAGTCCTTTAAAGGTTAAA-GTTGCGAGCAGCCCAGAGAGGGTGGGGTCCTGAAAGTCAGGACAGGGCTGG-CCCTGCCAAGAGAAGAGGCCAAAAGACTGAGGAG--CCCCCAT---CCACCGCCACATACAGGGCCTCTGGAGGGAAGTGATCAGCCCAAGGCTCCTGGAGGACTCTTCT---CACC--CAAGACATCTGAAGCTGTCATGAAACAGGCAATGAGAGCCGAGCAGTGGGGCCACAGCAGTGAGTCATGGCAAGCTCTGGCAGGGGATGCACCTGGTTACTAAC---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     139129 402 -    486031 aaaagagcaaatgaatggagcagtagctggagtggggaCCAGAGGCCCAGCTGGGCATATTTCCTGACATGGAAGTTCCCAGAACAGTAGAAAGGGGGAG-AATCGTATAGGAGAAAGAAGAGTCCTCTAAAGGTTAAA-GTTGCAAGCAGCCCAGAGAGGGTGGAGTCCTGAAAGCCAGGGCAGGGCTGG-CCCTGCCAAGAGAAGAGGCCAAAAGACTGAGAAG--CCCGCAT---CCACAGCCACATACAGGGCCTCTGGAGGGAAGTGATCAGCCCAAGGCTCCTGGAGAACTCTTCT---TACC--CAAGACATCTGAAGCTGTCATGAAACAGGCAATGAGAGCCGAGAAGTGGGGCCACAGCAATGAGTCATGGCAAGCTCTGGCAGGGGATGCACCTGGTTACTAAC---
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           379965 380 +  18854210 AAAAAAGCAAATAAATAGAGCAGTAGCTGGGGTGGGGGCTGGGGACTCAACCAGGCATATTTCCTGAAATGAGAGCTGCTAGAAC---AGAAAGAGAGAG-AATCACATAGGAGAAAGAGGA-TCCTCTAAGGGTTAAAGATTGTGAGCAGCCCAGAGAGAGTGGGGTC--------CAGAGCAGGGATGGACCCTGCTAAGAGAAGGGGCAGGAAGACTGAGGAG--TCCCTAT-----GTAACCACACAAAGGGCCTCTG---------------CCTAAGGCTCTCAGAGGAATGCTCT---CACCGGTGAGACTCCTGGAGCCATCATGAAACAGAAGATCAGAGCAGAGTAGCAAGGCTGGGACAATTTCTCTTAGCAACATGAGGCATGGGACATGCCTGGGTATTAACAGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26390970 306 +  26524999 ----------------------GCACCTGGGCCGTGGGGCAAGGGC-CAGGAGAGTGTGT--------------GTTGTTGGGACTGTGG-----------AACTGTACTGG-----------CCTTGTGAGGGTTTATGGCTGGGAGGCGCCCAGAGAGGGAGGG------AGACCCAT-GTGGGACCGG----------GGGGAGGGGTCCAGTG--TGGGAAC--CCAGAATAACCTGCAGTCACATGTATGACCCCAGCA-GGAAGCAGCCTGCCCACAGCTCCT-GAGGACCCCCCTGCACTCC--CAGTAC-TATAGGGCTGTCCTCAAACAGCC----A-CTCGGAGCAGAGTGGCTATGGCA----------------------AGGGAGCATGCCTGGGTGTGAAAGGA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     386675 2450 -   1411461 I

a score=328618.000000
s hg38.chr6_GL000254v2_alt  1536305 29 +   4827813 -GAGCATCAAGAAAGTTCTTCACGGGGGTG
s panTro5.chr6             30406178 29 + 175400573 -GAGCATCAAGAAAGTTCTTCACGGGGGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30640466 29 + 173848474 -GAGCATCAAGAAAGTTCTTCACGGGGGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     348250 29 +   2037526 -GAGCATCAAGAAAGTTCTTCACGGGGGTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75011522 29 + 122973662 -GAGCATCAAGAAAGTTATTCACGGGGGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30901710 29 + 172585720 -GAGTATCAAGAAAGTTCTTCACGAGGGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30191274 29 - 170955103 -GAGTATCAAGAAAGTTCTTCACGAGGGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     440148 29 +   1495729 -GAGTATCAAGAAAGTTCTTCACGAGGGTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     543774 29 -    863181 -GAGTATCAAGAAAGTTCTTCACGGGGGTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29690506 29 -  71996105 -GAGTATCAAGAAAGTTCTTCACGAGGGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     426013 29 -    735854 -GAGTATCAAGAAAGTTCTTCATGGGGGTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     332561 29 -   1829203 -GAGTATCAAGAAAGTTCTTCACGGGGGTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30521429 28 + 171630274 --AGCATCAGGAAGGTTCTTCATGGAGGCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           325137 28 +    515838 --AGCATCAGGAAGGTTCTTCATGGAGGTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     955633 28 -   1771730 --AGCATCAGGAAGGTTCTTCATGGAGGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     139531 28 -    486031 --AGCATCAGGAAGGTTCTTCATGGAGGTG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     389125 29 -   1411461 -GAGCATCAGGAAGGTTCTTCACGGGGGTG
i proCoq1.NW_012149775v1   I 2450 I 93
s otoGar3.GL873550           380345 29 +  18854210 -TAGCATCAGGAGAGTTCTTCATAGGAGTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26391276 30 +  26524999 GTGCCCTTGCGCAGGTCCTCCATGGCTGAG
i canFam3.chr35            C 0 I 9
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I

a score=150382.000000
s hg38.chr6_GL000254v2_alt  1536334 13 +   4827813 TACAGCAGGAGAA
s panTro5.chr6             30406207 13 + 175400573 TACAGCAGGAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30640495 13 + 173848474 TACAGCAGGAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     348279 13 +   2037526 TACAGCAGGAGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75011551 13 + 122973662 TACAGCAGGAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30901739 13 + 172585720 TACAGCAGGAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30191303 13 - 170955103 TACAGCAGGAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     440177 13 +   1495729 TACAGCAGGAGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     543803 13 -    863181 TACAGCAGGAGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29690535 13 -  71996105 TACAGCAGGAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     426042 13 -    735854 TACAGCAGGAGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     332590 13 -   1829203 TACAGCAGGAGAA
i colAng1.NW_012115577v1   C 0 I 201
s calJac3.chr4             30521457 13 + 171630274 TACAGCAAGAGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           325165 13 +    515838 TACAGCAAGAGAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     955661 13 -   1771730 TATAGCAAGAGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     139559 13 -    486031 TACAGCAAGAGAA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           380374 13 +  18854210 GGTAGTGGGAGGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26391315 13 +  26524999 CACGGTGGGGGAC
i canFam3.chr35            I 9 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389154 93 -   1411461 I

a score=896041.000000
s hg38.chr6_GL000254v2_alt  1536347  94 +   4827813 GCAGGG-TACAAGCATGCCACCTGATCCTGCAGGGC-CTGCCCGGGTT-ACCAGGGCAGG----ATGCAGTGTCTCTCTGGGCCTCTCCTGTCACCCCAAT
s panTro5.chr6             30406220  94 + 175400573 GCAGGG-TGCAAGCATGCCACCTGATCCTGCAGGGC-CTGCCCAGGTT-ACCAGGGCAGG----ATGCAGTGTCTCTCTGGGCCTCTCCTGTCACCCCAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30640508  94 + 173848474 GCAGGG-TGCAAGCATGCCACCTGATCCTGCAGGGC-CTGCCCAGGTT-ACCAGGGCAGG----ATGCAGTGTCTCTCTGGGCCTCTCCTGTCACCCCAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     348292  94 +   2037526 GCAGGG-TGCAAGCATGCCACCTGATCCTGCAGGGC-CTGCCCGGGTT-ACCAGGGCAGG----ATGCAGTGTCTCTCTGGGCCTCTCCTGTCACCCCAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75011564  95 + 122973662 GCAGGG-TGCAAGCATGCCACCTGATCATGCAGGGG-CAGCCCGGGTTAACCAGGGCAGG----ATGCAGTGGTTATTTGGGCCTTTCCTGTCACCCCAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30901752  95 + 172585720 GCAGGG-TGCAAGCATGCCACCTGATCCTGCAGGAC-CCGCCCGGGTTAACCAGGGCGGG----ATGCAGTGTCTTTCTGGGCCTCTCCTATCACCCCAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30191316  95 - 170955103 GCAGGG-TGCAAGCATGCCACCTGATCCCGCAGGGC-CCGCCCGGGTTAACCAGGGCAGG----ATGCAGTGTCTCTCTGGGCCTCTCCTATCACCCCAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     440190  95 +   1495729 GCAGGG-TGCAAGCATGCCACCTGATCCCGCAGGGC-CCGCCCGGGTTAACCAGGGCGGG----ATGCAGTGTCTCTCTGGGCCTCTCCTATCACCCTAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     543816  95 -    863181 GCAGGG-TGCAAGCATGCCACCTGATCCTGCAGGGT-CCGCCCGGGTTAACCAGGGCAGG----ATGCAGTGTCTCTCTGGGCCTCTCCTATCACCCCAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29690548  95 -  71996105 GCAGGG-TGCAAGCATGCCACCTGATCCTGCAGGGC-CCGCCCGGGTTAACCAGGGCGGG----ATGCAGTGTCTCTCTGGGCCTCTCCTATCACCCCAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     426055  95 -    735854 GCAGGG-TGCAAGCATACCACCTGATCCTGCAGGGC-CCGCCCGGGTTAACCAGGGTGGG----ATGCAGTGTCTCTCTGGGCCTCTCCTATCACCCCAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     332804  95 -   1829203 GCAAGG-TGCAAGCATGCCACCTGATCCTGCAGGGC-CCGCCCAGGTTAACCAGGGGAGG----ATGCAGTGTCCCTCTAGGCCTCTTCTATCACCCCAGT
i colAng1.NW_012115577v1   I 201 C 0
s calJac3.chr4             30521470  92 + 171630274 GTGGGA-TGCAAGCATGCCACCTAATCATGCAGGGT-CAGCCCCGCCTA---TGAGCAGG----ATGCAATGTCTCTCCGGGCCTCTCCTACCACCCCAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           325178  95 +    515838 GCGGGG-CGCAAGCGTGCCACCTAATCCTGCAGGGT-CAGCCCAGCCTAACCTGAGCAGG----AAGTAATGTCTCTCCGGGCCTCTCCTACTACCCCAGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     955674  92 -   1771730 GCAGGG-TGTAAGCATGCCACCTAATCCTGCAGGGT-CAGCCCCGCCTA---TAAGCAGG----ATGCAATGTCTCTCCGGGCCTCTCCTACCACCCCAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     139572  92 -    486031 GCGGGG-TGCAAGCATGCCACCTAATCCTGCAGGGT-CAGCCCTGCCTA---AGATCAGG----ATGCAATGCCTTTCCGGGCCTCTCCTACCACCCCAGT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           380387 100 +  18854210 GCAGAGCTGCAGGCCTGCCACTTGACCATGCAGGGCTCAGCCAGAGCTCACCAGGGGAGGATGCATGCAGTCTCTCACTGAGCCTCTCCTATCACCCGAT-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26391328  56 +  26524999 -ACGGG-CACAAG-GTGCCAATCCAGCCAGCCAGGC-CTATCCGGG------GGTGGATG----GTGCAG-------------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389154  93 -   1411461 I

a score=920859.000000
s hg38.chr6_GL000254v2_alt  1536441 79 +   4827813 CCCTTTAATGTCTTCTTGATGCTCCCAG-CCCATAGGTTTGTCTTTCCTTTCCTA-TCACCTCTATCAAAAGGTCTCTTCT
s panTro5.chr6             30406314 79 + 175400573 CCCTTTAATGTCTTCTTGATGCTCCCAG-CCCATAGGTTTGTCTTTCCTTTCCTA-TCACCTCTATCAAAAGGTCTCTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30640602 79 + 173848474 CCCTTTAATGTCTTCTTGATGCTCCCAG-CCCATAGGTTTGTCTTTCCTTTCCTA-TCACCTCTATCAAAAGGTCTCTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     348386 79 +   2037526 CCCTTTAATGTCTTCTTGATGCTCCCAG-CCCATAGGTTTGTCTTTCCTTTCCTA-TCACCTCTATCAAAAGGTCTCTTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75011659 78 + 122973662 CCCTTTAATGTCTTCTTGATGCTCCCAG-CCCATAGA-AAGTCTTTCGGATCTTA-TCACCTTTATCAAAAGATATATTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30901847 79 + 172585720 CCCTTTAATGTCTTCTTGATGCTCCCAG-CCCATAGGTTTGTCTTTCCTTTTCTA-TCACTTCTATCAAAAGATCTCTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30191411 79 - 170955103 CCCTTTAATGTCTTCTTGATGCTCCCAG-CCCATAGGTTTGTCTTTCCTTTTCTA-TCACTTCTATCAAAAGGTCTCTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     440285 79 +   1495729 CCCTTTAATGTCTTCTTGATGCTCCCAG-CCCATAGGTTTGTCTTTCCTTTTCTA-TCACTTCTATCAAAAGGTCTCTTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     543911 79 -    863181 CCCTTTAATGTCTTCTTGATGCTCCCAG-CCCATAGGTTTGTCTTTCCTTTTCTA-TCACTTCTATCAAAAGGTCTCTTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29690643 79 -  71996105 CCCTTTAATGTCTTCTTGATGCTCCCAG-CCCATAGGTTTGTCTTTCCTTTTCTA-TCACTTCTATCAAAAGGTCTCTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     426150 79 -    735854 CCCTTTAATGTCTTCTTGATGCTCCCAG-CCCATAGGTTTGTCTTTCCTTTTCTA-TCACTTCTATCAAAAGGTCTCTTCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     332899 79 -   1829203 CCCTTTAATGTCTTCTTGATGCTCCCAG-TCCATAGGTTTGTCTTTCCTTTACTA-TCACTTCTATCAAAAGTTCTCTTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30521562 80 + 171630274 CCCTTTAATGCCTTCTTGATGCTCCCAGCCCCACAGGTCTGTCATTCCTTTTTTA-TCATCTCTATCAAAAGGTCTCTTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           325273 80 +    515838 CCCTTTAATGCCTTCTTGATGCTCCCAGCCCCACAGGTCTGTCTTTTCTTTTTTA-TCATCTCTATCAAAAGGTCTCTTCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     955766 80 -   1771730 CCCTTTAACGCCTTCTTGATGCTTTCAGCCCCACAGGTCTGTCTTTCCTTTTTTA-CCATCTCTATCAAAAGGTCTGTTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     139664 80 -    486031 CCCTTTAATGCCTTCTTGATGCTCCCAGCCCCACAGGTCTGTCTGTCCTTTTTTG-TCATCTCTATCAAAAGGTCTCTTCT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     389247 79 -   1411461 CCCTTTAAGGTCTTCCTGATGCTCCAGG-CCCCGAGGTCTGTCCTTCCCTGTCTA-TCACCTTTATCAAAAGGCCTCTTCT
i proCoq1.NW_012149775v1   I 93 C 0
s otoGar3.GL873550           380487 80 +  18854210 CCCTTTAACATCTCCTTGATGCTTCTAG-CCCAGAAATCTTTCTTTCCTTTTCTATTCACCTTCATCAAAAGGCCTCTTCT
i otoGar3.GL873550         C 0 I 756
s canFam3.chr35            26391384 42 +  26524999 --------------CCTGA-GCTCCCAG-TCCAG----CTTCCTCTCCCCTCCGA-CCACCTC------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I

a score=557740.000000
s hg38.chr6_GL000254v2_alt  1536520 46 +   4827813 ATTTTACACATTTTGTCCTGCTGCTTCTCCCTCTCACCTGTATTTC
s panTro5.chr6             30406393 46 + 175400573 ATTTTACACATTTTGTCCTTCTGCTTCTCTCTCTCACCTGTATTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30640681 46 + 173848474 ATTTTACACATTTTGTCCTTCTGCTTCTCTCTCTCACCTGTATTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     348465 46 +   2037526 ATTTTACACATTTTGTCCTGCTGCTTCTCTCTCTCACCTGTATTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75011737 45 + 122973662 ATAAAACACATTTGGTCCTGCTGC-TCTCCCTCTCACCTGTAtttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30901926 46 + 172585720 ATTTTACACATTTTGTCCTGCTGCTTCTCCCTCTCACCTGTATTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30191490 46 - 170955103 ATTTTACACATTTTGTCCTGCTGCTTCTCCCTCTCACCTGTAtttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     440364 46 +   1495729 ATTTTACACATTTTGTCCTGCTGCTTCTCCCTCTTACCTGTATTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     543990 46 -    863181 ATTTTACACATTTTGTCCTGCTGCTTCTCCCTCTCACCTGTATTTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29690722 46 -  71996105 ATTTTACACATTTTGTCCTGCTGCTTCTTCCTCTCACCTGTATTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     426229 46 -    735854 ATTTTACACATTTTGTCCTGCTGCTTCTCCCTCTCACCTGTATTTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     332978 46 -   1829203 ATTTTACACATTTTGTCCTGCTGCTTCTCCCTCTCACCTGTATTTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30521642 46 + 171630274 ATTTTACACATTTTGTCCTGTTGCTTCTCCCTCTCACCTGTATTTC
i calJac3.chr4             C 0 I 4
s saiBol1.JH378341           325353 46 +    515838 ATTTTACACATTTTGTCCTGTTGCTTCTCCCTCTCACCTGTGTTTC
i saiBol1.JH378341         C 0 I 3
s cebCap1.NW_016107755v1     955846 46 -   1771730 ATTTTACACATTTTGTCCTGTTGCTTCTCCCTCTCACCTGTATTTC
i cebCap1.NW_016107755v1   C 0 I 6
s aotNan1.NW_018496901v1     139744 46 -    486031 ATTTTACACATTTTGTCCTGTTGCTTCTCCCTTTCACCTGTATTTC
i aotNan1.NW_018496901v1   C 0 I 6
s proCoq1.NW_012149775v1     389326 46 -   1411461 GTTTTACACATTTTGTACTGCTGCTTCTCCCTCTCACCTGTATTTC
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr35            26391426 32 +  26524999 -------------TGTCCTGCTGCCCCTCCCTC-CATCTGCCTCCC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e otoGar3.GL873550           380567 756 +  18854210 I

a score=-7844.000000
s hg38.chr6_GL000254v2_alt  1536566 3 +   4827813 TA-----t
s panTro5.chr6             30406439 3 + 175400573 TA-----t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30640727 3 + 173848474 TA-----t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     348511 3 +   2037526 TA-----t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75011782 3 + 122973662 ta-----t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30901972 4 + 172585720 TA----tt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30191536 4 - 170955103 ta----tt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     440410 4 +   1495729 TA----tt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     544036 8 -    863181 TATTTTtt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29690768 8 -  71996105 TATttttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     426275 8 -    735854 TATTTttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     333024 5 -   1829203 TA---Ttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30521692 4 + 171630274 TA----TT
i calJac3.chr4             I 4 C 0
s saiBol1.JH378341           325402 4 +    515838 TA----TT
i saiBol1.JH378341         I 3 C 0
s cebCap1.NW_016107755v1     955898 4 -   1771730 TA----TT
i cebCap1.NW_016107755v1   I 6 C 0
s aotNan1.NW_018496901v1     139796 4 -    486031 TA----tt
i aotNan1.NW_018496901v1   I 6 C 0
s canFam3.chr35            26391458 3 +  26524999 -----TGT
i canFam3.chr35            C 0 I 402
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389372 0 -   1411461 C
e otoGar3.GL873550           380567 756 +  18854210 I

a score=20065.000000
s hg38.chr6_GL000254v2_alt  1536569 11 +   4827813 tttat----tttaat
s panTro5.chr6             30406442 11 + 175400573 tttat----tttaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30640730 11 + 173848474 tttat----tttaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     348514 11 +   2037526 tttat----tttaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75011785 15 + 122973662 tttgttgtatttaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30901976 11 + 172585720 ccttt----ttaaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30191540 11 - 170955103 ttttt----aaaaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     440414 11 +   1495729 ccttt----ttaaat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     544044 11 -    863181 tcttt----tttaat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29690776 11 -  71996105 ttttt----tttaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     426283 11 -    735854 tcttt----ttaaat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     333029 11 -   1829203 tcttt----tttaat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30521696  9 + 171630274 Atttt----ttta--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           325406  8 +    515838 A-TTA----tttg--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     955902  9 -   1771730 Atttt----ttta--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     139800  9 -    486031 atttt----ttta--
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389372  0 -   1411461 C
e canFam3.chr35            26391461 402 +  26524999 I
e otoGar3.GL873550           380567 756 +  18854210 I

a score=1389528.000000
s hg38.chr6_GL000254v2_alt  1536580 134 +   4827813 ttttttgagacaggatctcactatgttgcccaggctggtctcaaactcctgggttcaagcaatctgcctgcctcagcctcccaaagtg---ctggaattataggtgtgaatcaccaca-ccagc-------------------------------------ctcacctgtatttc
s panTro5.chr6             30406453 134 + 175400573 ttttttgagacaggatctcactatgttgcccaggctggtctcaaactcctgggttcaagcaatctgcctgcctcagcctcccaaagtg---ctggaattataggtgtgaatcaccaca-ccagc-------------------------------------ctcacctgtatttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30640741 134 + 173848474 ttttttgagacaggatctcactatgttgcccaggctggtctcaaactcctgggttcaagcaatctgcctgcctcagcctcccaaagtg---ctggaattataggtgtgaatcaccaca-ccagc-------------------------------------ctcacctgtatttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     348525 134 +   2037526 ttttttgagacaggatctcactatgttgcccaggctggtctcaaactcctgggttcaagcaatctgcctgcctcagcctcccaaagtg---ctggaattataggtgtgaatcaccaca-ccagc-------------------------------------ctcacctgtatttc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75011800 112 + 122973662 ttttttgagacaggat----ctatgttg------------------tcctgggttcaagcaatctgtctgcctcagcctcccaaagtg---ctagaattataggtgtgagccaccaca-ccAGC-------------------------------------CTCACCTGTATTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30901987 134 + 172585720 ttttttgagacaggatctcactatgttgcccaggctggtctcaaactcctgggttcaagcaatctgtctgcctcagcctcccaaagtg---ctggaattctaggtgtgagccaccaca-ccagc-------------------------------------ctcacctgtatttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30191551 134 - 170955103 ttttttgagacaggatctcactatgttgcccaggctggtctcaaactcctgggttcaagcaatctgtctgcctcagcctcccaaagtg---ctggaattctaggtgtgagccaccaca-ccagc-------------------------------------ctcacctgtatttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     440425 134 +   1495729 ttttttgagacaggatctcactatattgcccaggctggtctcaaactcctgggttcaagcaatctgtctgcctcagcctcccaaagtg---ctggaattctaggtgtgagccaccaca-ccagc-------------------------------------ctcacctgtatttc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     544055 134 -    863181 ttttttcagacaggatctcactatgttgcccaggctggtctcaaactcctgggttcaagccatctgtctgcctcagcctcccaaagtg---ctggaattataggtgtgagccaccaca-ccagc-------------------------------------ctcacctgtatttc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29690787 134 -  71996105 ttttttgagacaggatctcactatgttgcccaggctggtctcaaactcctgggttcaagcaatctgtctgcctcagcctcccaaagtg---ctggaattctaggtgtgagccaccaca-ccagc-------------------------------------ctcacctgtatttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     426294 134 -    735854 ttttttgagacaggatctcactatgttgcccaggctggtctcaaactcctgggttcaagcaatctgtctgcctcagcctcccaaagtg---ctggaattctaggtgtgagccaccaca-ccagc-------------------------------------ctcacctgtatttc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     333040 134 -   1829203 ttttttgagacaggatcttactatgttgcccaggctggtctcaaactcctgggtttaagcaatctgtctgcctcagcctcccaaagtg---ctggaattataggtgtgagccaccaca-ccagc-------------------------------------ctcacctgtatttc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30521705 135 + 171630274 ttttttgagaca--ataacactatattgcccaggctggtctcaaactcctgttttcaagcaatctgtctgcctcagcctcccaaagtgctactagaatgataggtgtgcgccaccaca-ctggc-------------------------------------cTCACCTGTATTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           325414 134 +    515838 ttttttgagacaggatatcagtatgttgcccaggctggtctcaaactcctgggctcaagcaatctgtctgcctcagcctcccaaagtg---ctagaataataggtgtgcgccaccaca-ctggc-------------------------------------cTCACCTGTATTTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     955911 134 -   1771730 ttttttgagacaggatatcactatgttgctcaggttggtctcaaactcttggtttcaagcaatctgtctgcctcagcatcccaaagtg---ctagaattataggtgtgcgccaccaca-ctggc-------------------------------------cTCACCTGTATTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     139809 134 -    486031 ttttttgagacaggatatcactatgttgcccaggctggtctcaaactcctggtttcaagcaatctgtctgcctcagcctcccaaagtg---ctagaattataagtgcgcaccaccaca-gtggc-------------------------------------ctcacctgtatttt
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           381323 144 +  18854210 tttttagagacagagtctcgctcta--gctcaagctggtctcaa--------------------------ccttggcctcccagagtg---ctgggattataggcatgagccatcacgcccagccCCTTGTTTTGCATATTTTGTCCTGCTGTTTCTCCCTCCCACCTGTATTTC
i otoGar3.GL873550         I 756 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389372   0 -   1411461 C
e canFam3.chr35            26391461 402 +  26524999 I

a score=3673743.000000
s hg38.chr6_GL000254v2_alt  1536714 327 +   4827813 tCTATCAGACTTCTGGACCCTATTTTAGGTCTTTTTCTTACTATACTTTGACAGCCAAATAATCTCTGGGAAAATATTAATGCTAATTAGGGAGGTAGCTGTCCAGTTCCCACGCAGTACAATCAAACTCAAATAAGCACACAGACAAAATCTAccaatacc--atttttctgcgtatggttggttacccagttttcctagcaccatt-tattaaagagactgt---cccttcccc-attgtatgttcttggttcctttgttgaaaatcagttggctgtaaatatgtgaatttatttctgagttctctactctgttccattggtctatgtgtct
s panTro5.chr6             30406587 327 + 175400573 tCTATCAGACTTCTGGACCCTATTTTAGGTCTTTTTCTTACTATACTTTGACAGCCAAATAATCTCTGGGAAAATATTAATGCTAATTAGGGAGTTAGCTGTCCAGTTCCCACGCAGTACAATCAAACTCAAATAAGCACACAGACAAAATCTACCAATACc--atttttctgcgtatggttggttacccagttttcctagcaccatt-tattaaagagactgt---cccttcccc-attgcatgttcttggtgcctttgttgaaaatcagttcgctgtaaatatgtgaatttatttctgagttctctactctgttccattggtctatgtgtct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30640875 327 + 173848474 tCTATCAGACTTCTGGACCCTATTTTAGGTCTTTTTCTTACTATACTTTGACAGCCAAATAATCTCTGGGAAAATATTAATGCTAATTAGGGAGTTAGCTGTCCAGTTCCCACGCAGTACAATCAAACTCAAATAAGCACACAGACAAAATCTACCAATACc--atttttctgcgtatggttggttacccagttttcctagcaccatt-tattaaagagactgt---cccttcccc-attgcatgttcttggtgcctttgttgaaaatcagttcgctgtaaatatgtgaatttatttctgagttctctactctgttccattggtctatgtgtct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     348659 324 +   2037526 tCTATCAGACTTCTGGACCCTATTTTAGGTCTTTTTCTTACTATACTTTGACAGCCAAATAATCTCTGGGAAAATATTAATGCTAATTAGGGAGTTAGCTGTCCAGTTCCCACGCAGTACAATCAAACTCAAATAAGCACACAGACAAAATC------TACc--atttttctgcgtatggttggttacccagttttcctagcaccatt-tattaaagagactgtccccccttcccc-attgcatgttcttggtgcctttgttgaaaatcagttcgctgtaaatatgtgaatttatttctgagttctctactctgttccattggtctatgtgtct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75011912 327 + 122973662 TCTATCAGACTTCTGGACCCTATTTTAGGTCTTTTTCCTACTATACCTTGACAGCCAAATAATCTCTGGGAAAATATTAATGCTAATTAGGGAGTTCGCTGTCCAGTTCCCACGCAGTACAATCAAACTCAAATAAGCACACAGACAAAATCTACCAATACc--atttttctgtgtatggttggttacccagttttcccagcaccatt-tattaaagagactgt---cccttcccc-attgtatgttcttggcgcctttgttgaaaatcagttggctgtaaatatgtgaatttatttctgagttctctattctgttccattggtctatgtgtct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30902121 327 + 172585720 tCTATCAGACTTCTGGACCCTATTTTAGGTCTTTTTCTTACTATACTTTGACAGCCAAATAATCTCTGGGAAAATATTAATGCTAATTAGGGAGTTAGCTGTCCAGTTCCCACGCGTTACAATC-AACTCAAATAAGCACACAGACAAATTCTACCAATACc--atttttctgcatatggttggttacccagttttcccagcaccatt-tattaaagagactgt---cccttcccctactgtatgttcttggtgcttttgttgaaaatcagttggctgtaaataggtgaatttatttctgagttctctattctgttccattggtctatgtgtct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30191685 323 - 170955103 tCTATCAGACTTCTGGACCCTATTTTAGGTCTTTTTCTTACTATACTTTGACAGCCAAATAATCTCTGGGAAAATATTAATGCTAATTAGGGAGTTAGCTGTCCAGTTCCCACGCGTTACAATC-AACTC----AAGCACACAGACAAAATCTACCAATACc--atttttctgcatatggttggttacccagttttcccagcaccatt-tattaaagagactgt---cccttcccctactgtatgttcttggtgcttttgttgaaaatcagttggctgtaaatatgtgaatttatttctgagttctctattctgttccattggtctatgtgtct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     440559 326 +   1495729 tCTATCAGACTTCTGGACCCTATTTTAGGTCTTTTTCTTACTATACTTTGACAGCCAAATAATCTCTGGGAAAATATTAATGCTAATTAGGGAGTTAGCTGTCCAGTTCCCACGCATTACAATC-AACTCAAATAAGCACACAGACAAATTCTACCAATACc--atttttctgcatatggttggttacccagttttcccagcaccatt-tattaaagagactgt---cccttcccctactgtatgttcttggtgcttttgttgaaaatc-gtgggctgtaaatatgtgaatttatttctgagttctctattctgttccattggtctatgtgtct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     544189 323 -    863181 tCTATCAGACTTCTGGACCCTATTTTAGGTCTTTTTCTTACTATACTTTGACAGCCAAATAATCTCTGGGAAAATATTAATGCTAATTAGGGAGTTAGCTGTCCAGTTCCCATGCGTTACAATC-AACTC----AAGCACACAGACAAAATCTACCAATACc--atttttctgcatatggttggttacccagttttcccagcaccatt-tattaaagagactgt---cccttcccccactgtatgttcttggtgcttttgttgaaaatcagttggctataaatatgtgaatttatttctgagttctctattctgttccattggtctatgtgtct
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29690921 314 -  71996105 tCTATCAGACTTCTGGACCCTATTTTAGGTCTTTTTCTTACTATACTTTGACAGCCAAATAATCTCTGGGAAAATATTAATGCTAATTAGGGAGTTAGCTGTCCAGTTCCTATGCGTTACAATC-AACTC----AAGCACACAGACAAAATCTACCAATACc--atttttctgcatatggttggttacccagctttcccagcaccatt-tattaaagagactgt---cccttcccccactgta---------tgcttttgttgaaaatcagttggctataaatatgtgaatttatttctgagttctgtattctgttccattggtctatgtgtct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     426428 321 -    735854 tCTATCAGACTTCTGGACCCTATTTTAGGTCTTTTTCTTACTACACTTTGACAGCCAAATAATCTCTGGGAAAATATTAATGCTAATTAGGGAGTTAGCTGTCCAGTTCCCATGCGTTACAATC-AACTC----AAGCACACAGACAAAATCTACCAATACc--atttttctgcatatggttggttacccagttttcccagcaccatt-tatt--agagactgt---cccttcccccactgtatgttcttggtgcttttgttgaaaatcagttggctataaatatgtgaatttatttctgagttctctattctgttccattggtctatgtgtct
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     333174 325 -   1829203 tCTATCAGACTTCTGGACCCTATTTTAGGTCTTCTTCTTACTATACTTTGACAGCCAAATAATCTCTGGGAAAATATTAATGCTAATTAGGGAGTTAGCTGTCCAGTTCCCACGCAGTACAATC-AACTCAAATAAGCACACAGACAAAATCTACCAATACT--atttttctgcatatggttggttacccagttttcccagcaccatt-tattaaagagac--t---cccttcccccactgtatgttcttggtgcttttgttgaaaatcagttggctgtaaatatgtgaatttatttctgagttctctattctgttccattggtctatgtgtct
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30521840 328 + 171630274 TCTATCAGACATCTGAACCCTATTTTGGGTCTTTTTCTTACTATACTTTGACAGCCAAATAATCTCTGGGAAAATATTAATGATAATTAGGGAGTTAGCTATCTAGTTACCATGTGGTACAATCAAACTCAAATAAGCACAGAGACAAAATCTATCAATATC-TTtttttctgcctatggttggttacctagttttcctagcaccatt-tattaaagagactgt---cccttccct-gttgtatgttcttggtgcctttgttgaaaaccagttggctataaatatgtggatttatttctgagttctctattctgttccattggtctacgtgtct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           325548 329 +    515838 TCTATCAGACTTCTGGAACCTATTTTGGGTCTTTTTCTTTCTATACATTGACAGCCAAATAATCTCTGGGAAAATATTAATGATAATTAGGGAGTTAGCTATCTAGTTCCCATGTGGTACAATCAAACTCAAATAAGCACACAGACAAAATCTACCAATGCCTTTtttttctgcctgtggttggttatctagttttcttagcaccatt-tattaaagagactgt---cccttccct-gttgtatcttcttggtgcctttgttgaaaaccagttggctgtaaatatgtggacttatttctgagttctctattctgttccattggtctatgtgtct
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     956045 309 -   1771730 TCTATCAGACTTCTGGACCTTCTTTTGGGTCTTTTTCTTACTATCCTTTGACAGCCAAATAATCTCTGGGAAAATATTAATGATAATTAGGGAGTTAGCTATCTAGTTCCCATGT--------------------AGCACACAGACAAAATCTACCAATACCTTTtttttctgtctatggctggttacctagttttcccagcaccatt-tattaaagagactgt---cccttcctc-attgtatgttctaggtacctttgttgaaagccagtaggctgtaaatatgtggatttatttctgagttctctattctgttccattggtctatgtgtct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     139943 329 -    486031 tCTATCAGACTTCTGGACCCTATTTTGGGTCTTTCTCTTACTATACTTTGACAACCAAATAATCTCTGGGAAAATATTAATGATAATTAGGGAGTTAGCTATCTAGTTCCCACGTGGTACAATCAAACTCAAATAAGCACACAGACAAAATCTACCAATACCTTTtttttctgcctgtggttggttacctagttttcctagcaccatt-tattaaagagactgt---cccttccct-gttgtaggttcttggtgcctttgttgaaaaccagttggctgtaaatatgtggatttctttctgagttctctattctgttccattggtctatgtgtct
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     389372 321 -   1411461 TCTATTAGACTTTGGGACCCCATTTTGGGTCTCTTTTCTACTGTCCTTTGGCAGCCAAATAGTCTCCGGGGAAATATTGGTGATAATTAAGCAGTTAGCTGGCTAGTTCCCTTGTAGCAAAATCAAACTCAAATAAACGCACAGACAAAACCCAccagcttc--attcttctgcatgcggatg----tccagttttcccagcactgttatattaaagagactat---gtttttcca----acatgcttgtggtgacgttgttgaaaatcaattggctataaatacatggatttacttctgggttctctagtctgttccatgggtctatgtatct
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           381467 284 +  18854210 TCTGGTAGATTTTTGGACCCTATTTTGGG--TCTTTCCTACTGTCCTTTAACAGCCAAATAATCTCTGGGCAAATATTAATAATAATTAAGGAATTAGTGGGCTGGTACTCGTGCAGCAAAATCAAACTTTG--TAACAAACACACAAAACCCAACagttcc--attcttctgcatatgaata----tctggttttcccag--------------------tat---gttct-----------------tgacaactttgtcaaaaaccagttggctataaatatatagatttatttctgggttctctattttgttccattggtctatgtgtct
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e canFam3.chr35            26391461 402 +  26524999 I

a score=393734.000000
s hg38.chr6_GL000254v2_alt  1537041 36 +   4827813 gcttttatatcaatac-atgctg-ttttggttactaca
s panTro5.chr6             30406914 36 + 175400573 gcttttatatcaatac-atgctg-ttttggttactaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30641202 37 + 173848474 gcttttatatcaatac-atgctgtttttggttactaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     348983 36 +   2037526 gcttttatatcaatac-atgctg-ttttggttactaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75012239 36 + 122973662 gcttttatatcaatac-atgctg-ttttggttactaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30902448 36 + 172585720 gcttttataacaatac-atgctg-ttttggttactaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30192008 36 - 170955103 gcttttatatcaatac-atgctg-ttttggttactaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     440885 36 +   1495729 gcttttataacaatac-atgctg-ttttggttactaca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     544512 36 -    863181 gcttttatatcaatac-atgctg-ttttggttactaca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29691235 36 -  71996105 gcttttatatcaatac-atgctg-ttttggttactaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     426749 36 -    735854 gcttttatatcaatac-atgctg-ttttggttactaca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     333499 36 -   1829203 gcttttatatcaatac-atgctg-ttttggttactaca
i colAng1.NW_012115577v1   C 0 M 505
s calJac3.chr4             30522168 37 + 171630274 gcttttatatcagtactatgctg-ttttggttactaca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           325877 37 +    515838 gcttttatatcagtactatgctg-ttttggttactaca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     956354 37 -   1771730 gcttttatatcaatactatgctg-ttttggttactaca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     140272 37 -    486031 gcttttatatcagtactatgctg-ttttggttactata
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     389693 37 -   1411461 gtttttgtatgaatgccacactg-ttctggttactatg
i proCoq1.NW_012149775v1   C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e canFam3.chr35            26391461 402 +  26524999 I
e otoGar3.GL873550           381751  0 +  18854210 C

a score=12000.000000
s hg38.chr6_GL000254v2_alt  1537077 1 +   4827813 g
s panTro5.chr6             30406950 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30641239 1 + 173848474 g
i panPan2.chr6             C 0 I 12
s gorGor5.CYUI01015528v1     349019 1 +   2037526 g
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75012275 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30902484 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30192044 1 - 170955103 g
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     440921 1 +   1495729 g
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     544548 1 -    863181 g
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29691271 1 -  71996105 g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     426785 1 -    735854 g
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30522205 1 + 171630274 g
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           325914 1 +    515838 g
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     956391 1 -   1771730 g
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     140309 1 -    486031 g
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     389730 1 -   1411461 g
i proCoq1.NW_012149775v1   C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e canFam3.chr35            26391461 402 +  26524999 I
e otoGar3.GL873550           381751 0 +  18854210 C
e colAng1.NW_012115577v1     333535 505 -   1829203 M

a score=59773.000000
s hg38.chr6_GL000254v2_alt  1537078 7 +   4827813 ctttgta
s panTro5.chr6             30406951 6 + 175400573 ctttgt-
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     349020 7 +   2037526 ctttgta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75012276 7 + 122973662 ctttgca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30902485 7 + 172585720 ctttgta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30192045 7 - 170955103 ctttgta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     440922 7 +   1495729 ctttgta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     544549 7 -    863181 ctttgta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29691272 7 -  71996105 ctttgta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     426786 7 -    735854 ctttgta
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30522206 7 + 171630274 ctttgta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           325915 7 +    515838 ctttgta
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     956392 7 -   1771730 ctttgta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     140310 7 -    486031 ctttgta
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     389731 7 -   1411461 ctttgta
i proCoq1.NW_012149775v1   C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e canFam3.chr35            26391461 402 +  26524999 I
e otoGar3.GL873550           381751 0 +  18854210 C
e colAng1.NW_012115577v1     333535 505 -   1829203 M
e panPan2.chr6             30641240 12 + 173848474 I

a score=24466.000000
s hg38.chr6_GL000254v2_alt  1537085 4 +   4827813 gtat
s gorGor5.CYUI01015528v1     349027 4 +   2037526 gtgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75012283 4 + 122973662 gtat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30902492 4 + 172585720 gtgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30192052 4 - 170955103 gtgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     440929 4 +   1495729 gtgt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     544556 4 -    863181 gtgt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29691279 4 -  71996105 gtgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     426793 4 -    735854 gtgt
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30522213 4 + 171630274 gtgt
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     956399 4 -   1771730 gtat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     140317 4 -    486031 gtat
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     389738 4 -   1411461 gtat
i proCoq1.NW_012149775v1   C 0 I 1460
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e canFam3.chr35            26391461 402 +  26524999 I
e saiBol1.JH378341           325922 0 +    515838 C
e otoGar3.GL873550           381751 0 +  18854210 C
e colAng1.NW_012115577v1     333535 505 -   1829203 M
e panPan2.chr6             30641240 12 + 173848474 I
e panTro5.chr6             30406957 0 + 175400573 C

a score=2156.000000
s hg38.chr6_GL000254v2_alt  1537089 1 +   4827813 a
s gorGor5.CYUI01015528v1     349031 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75012287 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30902496 1 + 172585720 a
i rheMac8.chr4             C 0 I 23
s macFas5.chr4             30192056 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     440933 1 +   1495729 a
i macNem1.NW_012012100v1   C 0 I 39
s cerAty1.NW_012002535v1     544560 1 -    863181 g
i cerAty1.NW_012002535v1   C 0 I 8
s chlSab2.chr17            29691283 1 -  71996105 G
i chlSab2.chr17            C 0 I 8
s manLeu1.NW_012107142v1     426797 1 -    735854 g
i manLeu1.NW_012107142v1   C 0 I 8
s calJac3.chr4             30522217 1 + 171630274 a
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     956403 1 -   1771730 a
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     140321 1 -    486031 a
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I
e saiBol1.JH378341           325922 0 +    515838 C
e otoGar3.GL873550           381751 0 +  18854210 C
e colAng1.NW_012115577v1     333535 505 -   1829203 M
e panPan2.chr6             30641240 12 + 173848474 I
e panTro5.chr6             30406957 0 + 175400573 C

a score=1365.000000
s hg38.chr6_GL000254v2_alt  1537090 1 +   4827813 t
s gorGor5.CYUI01015528v1     349032 1 +   2037526 t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75012288 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30522218 1 + 171630274 t
i calJac3.chr4             C 0 I 723
s cebCap1.NW_016107755v1     956404 1 -   1771730 t
i cebCap1.NW_016107755v1   C 0 I 5
s aotNan1.NW_018496901v1     140322 1 -    486031 t
i aotNan1.NW_018496901v1   C 0 I 657
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I
e saiBol1.JH378341           325922 0 +    515838 C
e otoGar3.GL873550           381751 0 +  18854210 C
e colAng1.NW_012115577v1     333535 505 -   1829203 M
e manLeu1.NW_012107142v1     426798 8 -    735854 I
e chlSab2.chr17            29691284 8 -  71996105 I
e cerAty1.NW_012002535v1     544561 8 -    863181 I
e macNem1.NW_012012100v1     440934 39 +   1495729 I
e macFas5.chr4             30192057 0 - 170955103 C
e rheMac8.chr4             30902497 23 + 172585720 I
e panPan2.chr6             30641240 12 + 173848474 I
e panTro5.chr6             30406957 0 + 175400573 C

a score=-66.000000
s hg38.chr6_GL000254v2_alt  1537091 12 +   4827813 atatatatgtat
s gorGor5.CYUI01015528v1     349033 12 +   2037526 atatatatatat
i gorGor5.CYUI01015528v1   C 0 I 285
s nomLeu3.chr1a            75012289  2 + 122973662 at----------
i nomLeu3.chr1a            C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I
e saiBol1.JH378341           325922  0 +    515838 C
e otoGar3.GL873550           381751  0 +  18854210 C
e aotNan1.NW_018496901v1     140323 657 -    486031 I
e cebCap1.NW_016107755v1     956405  5 -   1771730 I
e calJac3.chr4             30522219 723 + 171630274 I
e colAng1.NW_012115577v1     333535 505 -   1829203 M
e manLeu1.NW_012107142v1     426798  8 -    735854 I
e chlSab2.chr17            29691284  8 -  71996105 I
e cerAty1.NW_012002535v1     544561  8 -    863181 I
e macNem1.NW_012012100v1     440934 39 +   1495729 I
e macFas5.chr4             30192057  0 - 170955103 C
e rheMac8.chr4             30902497 23 + 172585720 I
e panPan2.chr6             30641240 12 + 173848474 I
e panTro5.chr6             30406957  0 + 175400573 C

a score=-242.000000
s hg38.chr6_GL000254v2_alt  1537103 11 +   4827813 atatacatata-
s macFas5.chr4             30192057 10 - 170955103 --GTacacacta
i macFas5.chr4             C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I
e saiBol1.JH378341           325922  0 +    515838 C
e otoGar3.GL873550           381751  0 +  18854210 C
e aotNan1.NW_018496901v1     140323 657 -    486031 I
e cebCap1.NW_016107755v1     956405  5 -   1771730 I
e calJac3.chr4             30522219 723 + 171630274 I
e colAng1.NW_012115577v1     333535 505 -   1829203 M
e manLeu1.NW_012107142v1     426798  8 -    735854 I
e chlSab2.chr17            29691284  8 -  71996105 I
e cerAty1.NW_012002535v1     544561  8 -    863181 I
e macNem1.NW_012012100v1     440934 39 +   1495729 I
e rheMac8.chr4             30902497 23 + 172585720 I
e nomLeu3.chr1a            75012291  0 + 122973662 C
e gorGor5.CYUI01015528v1     349045 285 +   2037526 I
e panPan2.chr6             30641240 12 + 173848474 I
e panTro5.chr6             30406957  0 + 175400573 C

a score=7364.000000
s hg38.chr6_GL000254v2_alt  1537114 59 +   4827813 tatgtatatatatacatatatatgtgtgtatatatatatgtgtgtgtgtgtgtgtgtgt
s panTro5.chr6             30406957 47 + 175400573 ------tatatatatatatatat------atatattttttttttttttttttttttttt
i panTro5.chr6             C 0 C 0
s nomLeu3.chr1a            75012291  4 + 122973662 -------------------------------atgt------------------------
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30192067 27 - 170955103 cacacacacacacacaTATATATGTGT--------------------------------
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     544569 39 -    863181 tacacacacacacacatatatatgtgtatatatatatat--------------------
i cerAty1.NW_012002535v1   I 8 C 0
s chlSab2.chr17            29691292 36 -  71996105 tacacacacacacacatatatatatgtgtatatata-----------------------
i chlSab2.chr17            I 8 C 0
s manLeu1.NW_012107142v1     426806 38 -    735854 tacacacacacacacatatatatgtgtgtatatatatg---------------------
i manLeu1.NW_012107142v1   I 8 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I
e saiBol1.JH378341           325922  0 +    515838 C
e otoGar3.GL873550           381751  0 +  18854210 C
e aotNan1.NW_018496901v1     140323 657 -    486031 I
e cebCap1.NW_016107755v1     956405  5 -   1771730 I
e calJac3.chr4             30522219 723 + 171630274 I
e colAng1.NW_012115577v1     333535 505 -   1829203 M
e macNem1.NW_012012100v1     440934 39 +   1495729 I
e rheMac8.chr4             30902497 23 + 172585720 I
e gorGor5.CYUI01015528v1     349045 285 +   2037526 I
e panPan2.chr6             30641240 12 + 173848474 I

a score=-378.000000
s hg38.chr6_GL000254v2_alt  1537173 6 +   4827813 atatat
s panTro5.chr6             30407004 6 + 175400573 tttttt
i panTro5.chr6             C 0 C 0
s rheMac8.chr4             30902520 6 + 172585720 acacac
i rheMac8.chr4             I 23 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I
e saiBol1.JH378341           325922 0 +    515838 C
e otoGar3.GL873550           381751 0 +  18854210 C
e aotNan1.NW_018496901v1     140323 657 -    486031 I
e cebCap1.NW_016107755v1     956405 5 -   1771730 I
e calJac3.chr4             30522219 723 + 171630274 I
e colAng1.NW_012115577v1     333535 505 -   1829203 M
e manLeu1.NW_012107142v1     426844 0 -    735854 C
e chlSab2.chr17            29691328 0 -  71996105 C
e cerAty1.NW_012002535v1     544608 0 -    863181 C
e macNem1.NW_012012100v1     440934 39 +   1495729 I
e macFas5.chr4             30192094 0 - 170955103 C
e nomLeu3.chr1a            75012295 0 + 122973662 C
e gorGor5.CYUI01015528v1     349045 285 +   2037526 I
e panPan2.chr6             30641240 12 + 173848474 I

a score=595.000000
s hg38.chr6_GL000254v2_alt  1537179 4 +   4827813 atat
s panTro5.chr6             30407010 4 + 175400573 tttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30641252 4 + 173848474 atat
i panPan2.chr6             I 12 C 0
s nomLeu3.chr1a            75012295 4 + 122973662 atgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30902526 4 + 172585720 acac
i rheMac8.chr4             C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I
e saiBol1.JH378341           325922 0 +    515838 C
e otoGar3.GL873550           381751 0 +  18854210 C
e aotNan1.NW_018496901v1     140323 657 -    486031 I
e cebCap1.NW_016107755v1     956405 5 -   1771730 I
e calJac3.chr4             30522219 723 + 171630274 I
e colAng1.NW_012115577v1     333535 505 -   1829203 M
e manLeu1.NW_012107142v1     426844 0 -    735854 C
e chlSab2.chr17            29691328 0 -  71996105 C
e cerAty1.NW_012002535v1     544608 0 -    863181 C
e macNem1.NW_012012100v1     440934 39 +   1495729 I
e macFas5.chr4             30192094 0 - 170955103 C
e gorGor5.CYUI01015528v1     349045 285 +   2037526 I

a score=11430.000000
s hg38.chr6_GL000254v2_alt  1537183 16 +   4827813 atatatatatatatat
s panTro5.chr6             30407014 16 + 175400573 tttttttttttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30641256 16 + 173848474 atatatatatatatat
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            75012299 16 + 122973662 atgtatatatatatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30902530 16 + 172585720 acatatatatatatat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30192094  4 - 170955103 ------------ATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     440973 16 +   1495729 acatatatatatatat
i macNem1.NW_012012100v1   I 39 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I
e saiBol1.JH378341           325922  0 +    515838 C
e otoGar3.GL873550           381751  0 +  18854210 C
e aotNan1.NW_018496901v1     140323 657 -    486031 I
e cebCap1.NW_016107755v1     956405  5 -   1771730 I
e calJac3.chr4             30522219 723 + 171630274 I
e colAng1.NW_012115577v1     333535 505 -   1829203 M
e manLeu1.NW_012107142v1     426844  0 -    735854 C
e chlSab2.chr17            29691328  0 -  71996105 C
e cerAty1.NW_012002535v1     544608  0 -    863181 C
e gorGor5.CYUI01015528v1     349045 285 +   2037526 I

a score=-13124.000000
s hg38.chr6_GL000254v2_alt  1537199 23 +   4827813 atatttttttttttttttttctt
s panTro5.chr6             30407030 23 + 175400573 ttttttttttttttttttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30641272 15 + 173848474 atatttttttttt--------tt
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            75012315 22 + 122973662 atattttttgtttgtttgtttg-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30902546  5 + 172585720 atatt------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30192098  5 - 170955103 ATATA------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     440989  5 +   1495729 atatt------------------
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29691328  2 -  71996105 ---ta------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     426844  2 -    735854 ---ta------------------
i manLeu1.NW_012107142v1   C 0 C 0
s otoGar3.GL873550           381751 23 +  18854210 atgtttttCttttcttttttttt
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I
e saiBol1.JH378341           325922  0 +    515838 C
e aotNan1.NW_018496901v1     140323 657 -    486031 I
e cebCap1.NW_016107755v1     956405  5 -   1771730 I
e calJac3.chr4             30522219 723 + 171630274 I
e colAng1.NW_012115577v1     333535 505 -   1829203 M
e cerAty1.NW_012002535v1     544608  0 -    863181 C
e gorGor5.CYUI01015528v1     349045 285 +   2037526 I

a score=929499.000000
s hg38.chr6_GL000254v2_alt  1537222 187 +   4827813 ttttttaatggagtctcactctattgcccaggctggaatgcagtggcacaatctcggctcactgcaacctctgcctcctggattcaagtgattctcctgcctcagcctcccgagtagctgggattataggtgcgcaccatcacgcccagctaatttttgtatttttagtagagat-ggggtttcacca
s panTro5.chr6             30407053 187 + 175400573 ttttttAatggagtctcactctattgcccaggctggaatgcagtggcgcaatctcggctcactgcaacctctgcctcctggattcaagtgattctcctgcctcagcctcccgagtagctgggattataggtgcgcaccatcacgtccagctaatttttgtatttttagtagagat-ggggtttcacca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30641287 187 + 173848474 ttttttaatggagtctcactctattgcccaggctggaatgcagtggcgcaatctcggctcactgcaacctctgcctcctggattcaagtgattctcctgcctcagcctcccgagtagctgggattataggtgcgcaccatcacgtccagctaatttttgtatttttagtagagat-ggggtttcacca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     349330 187 +   2037526 tTTTTTAatggagtctcactctattgcccaggctggaatgcagtggcgcaatctcggctcactgcaacctctgcctcctggattcaagtgattctcctgcctcagcctcccgagtagctgggattataggtgcgcaccatcacgcccagctaatttttgcattcttagtagagat-ggggtttcacca
i gorGor5.CYUI01015528v1   I 285 C 0
s nomLeu3.chr1a            75012337 187 + 122973662 ttttttaatggagtctcactctgttgcccaggctggagtgcagtggcacgatctcggctcactgcaacctctgcctcctggattcaagtgattctcctgcctcagcctcccgagtaactgggattacaagtgtgcaccatcacgcccggctaatttttgtatttttagtagagat-ggggtttcacca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30902551 184 + 172585720 tttttaaatggagt----ctctattgcccaggctggagtgcagtggcacaatctcggctcactgcaacctctgcctcccagattcaagcaattctcctgcctcagcctcccgagtagctgggattacaggtgcgcaccaccacgcctggctaatttttgtatttttagtagggatgggggtttcacca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30192103 184 - 170955103 tttttaaatggagt----ctctattgcccaggctggagtgcagtggcacaatctcggctcactgcaacctctgcctcccagatgcacgcaattctcctgcctcagcctcccgagtagctgggattacaggtgcgcaccaccacacttggctaatttttgtattttttgtagggatgggggtttcacca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     440994 181 +   1495729 tttttaaatggagt----ctctattgcccaggctggagtgcagtggcacaatctcggctcactgcaacctctgcctcccagattcaagcaatt---ctgcctcagcctcccgagtagctgggattacaggtgcgcaccaccacgcctggctaatttttgtatttttagtagggatgggggtttcacca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     544608 183 -    863181 -ttttaaatggagt----ctctattgcccaggctggagtgcagtggcacaatctcggctcactgcaacctctgcctcccagattcaagcaattctcctgcctcagcctcccgagtagctgggattacaggtgcgcaccaccacgcctggctaatttttgtatttttagtagggatgggggtttcacca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29691330 184 -  71996105 tttttaaatggagt----ctctattgcccaggctggagtgcagtggcacaatctcggctcactgcaacctctgcctcccagattcaagcaattctcctgcctcagcctcccgagtagctgggattacaggtgcgcaccaccacgcctggctaatttttgtatttttagtagggatgggggtttcacca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     426846 184 -    735854 tttttaaatggagt----ctctattgcccaggctggagtgcagtggcacaatctcggctcactgcaacctctgcctcccagattcaagcaattctcctgcctcagcctcccgagtagctgggattacaggtgcgcaccaccacgcctggctaatttttgtatttttagtagggatgggggtttcacca
i manLeu1.NW_012107142v1   C 0 C 0
s otoGar3.GL873550           381774 172 +  18854210 ttttgagacagaatctcactttgttgcccttagtagaatgccatga---agtcatagctcacagcaacctcaaactcttaggctcagctgatcctcttgcctcagcttcccaagtagctgggactagagatacctgccacaatgcctggctatttt------------tagagac-aaagtctcactc
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I
e saiBol1.JH378341           325922   0 +    515838 C
e aotNan1.NW_018496901v1     140323 657 -    486031 I
e cebCap1.NW_016107755v1     956405   5 -   1771730 I
e calJac3.chr4             30522219 723 + 171630274 I
e colAng1.NW_012115577v1     333535 505 -   1829203 M

a score=602201.000000
s hg38.chr6_GL000254v2_alt  1537409 101 +   4827813 tgttggtcaggctggtctcaaactcctgacctc--gtgatccgcctgcctcggcctcacaaagtgctgggattacaggtgtg------------------agccaccacaactggctgtag
s panTro5.chr6             30407240 101 + 175400573 tgttggtcaggctggtctcaaactcctgacctc--gtgatccgcccgcctcggcctcacaaagtgctgggattacaggtgtg------------------agccaccacaactggctgtag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30641474 101 + 173848474 tgttggtcaggctggtctcaaactcctgacctc--gtgatccgcccgcctcggcctcacaaagtgctgggattacaggtgtg------------------agccaccacaactggctgtag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     349517 101 +   2037526 tgttggtcgggctggtctcaaactcctgatctc--gtgatccgcccgcctcggcctcacaaagtgctgggattacaggtgtg------------------agccaccacaactggctgtag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75012524 101 + 122973662 tgttggtcaggctgctctcaaactcctgacctc--gtgatccacccgcctcggcctcacaaagtgctgggattacaggtgtg------------------agccaccacacctggctgtag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30902735 101 + 172585720 tgttggtcaggctggtctctaactcctgacctc--gtgatccgcctgcctcggcctcacaaagtgctgggattacaggtgtg------------------agccaccacacctggctgtag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30192287  98 - 170955103 tgttggtcaggctggtctcaaactcctgacctc--gtgatccgcctgcctcggcctcacaaagtgctgggattacaggtgtg------------------agccacca---cTGGCtgtag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     441175 101 +   1495729 tgttggtcaggctggtctctaactcctgacctt--gtgatccgcctgcctcggcctcacaaagtgctgggattacaggtgtg------------------agccaccacacctggctgtag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     544791  98 -    863181 tgttggtcaggctggtctcaaactcctgacctc--gtgatccgcctgcctcggcctcacaaaatgctgggattacaggtgtg------------------agccacca---ctggctgtag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29691514  98 -  71996105 tgttggtcaggctggtctcaaactcctgacctc--gtgatccgcctgcctcggcctcacaaagtgctgggattacaggtgtg------------------agccacca---cTGGCtgtag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     427030  98 -    735854 tgttggtcaggctggtctcaaactcctgacctc--gtgatccgcctgcctcggcctcacaaagtgctgggattacaggtgtg------------------agccacca---ctggctgtag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     334040 101 -   1829203 tgttggtcaggctggtctcaaactcctgacctc--gtgatccgcctgcctcagcctcacaaagtgctgggattacaggtgtg------------------agccaccacacctggctgtag
i colAng1.NW_012115577v1   M 505 C 0
s otoGar3.GL873550           381946 117 +  18854210 --tggctcaagctggtcttgaatctgtgagttcaggcaacccacacaccatggcctcacaAgtatatgtgtctatttatatatcaatataatattgctctaggtactacagct--ttgtag
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I
e saiBol1.JH378341           325922   0 +    515838 C
e aotNan1.NW_018496901v1     140323 657 -    486031 I
e cebCap1.NW_016107755v1     956405   5 -   1771730 I
e calJac3.chr4             30522219 723 + 171630274 I

a score=143838.000000
s hg38.chr6_GL000254v2_alt  1537510 18 +   4827813 tatattttgaagtaagat
s panTro5.chr6             30407341 18 + 175400573 tatattttgaagtaagat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30641575 18 + 173848474 tatattttgaagtaagat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     349618 18 +   2037526 tatattttgaagtaagat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75012625 18 + 122973662 catattttgaagtaagat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30902836 18 + 172585720 tatattttgaagtaagat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30192385 18 - 170955103 tatattttgaagtaagat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     441276 18 +   1495729 tatattttgaagtaagat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     544889 18 -    863181 tatattttgaagtaagat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29691612 18 -  71996105 tatattttgaagtaagat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     427128 18 -    735854 tatattttgaagtaagat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     334141 18 -   1829203 tatattttgaagtaagat
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           325922 18 +    515838 tgtattttgaagtaagat
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           382063 18 +  18854210 tgtattttgaagtaaggc
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I
e aotNan1.NW_018496901v1     140323 657 -    486031 I
e cebCap1.NW_016107755v1     956405  5 -   1771730 I
e calJac3.chr4             30522219 723 + 171630274 I

a score=2701052.000000
s hg38.chr6_GL000254v2_alt  1537528 341 +   4827813 agtgtgaggcctccagttttgttctttttgcttaggattgctttggccatttggggttttttgtgactcca-tatgaattttagttttttttctatttttctgaagaatgtcattcgtattttgataacagggattgtattaaatctgtagactgctttgggtaggacagtcattttaacaatattaattctaatccacaagcatggaatatttttccatttgtttgtgtcttcttcaatttctttcatcagtgttttgtagttttcattaaagaggtctttcacctccttggttaacttcattcccaggtattttat---tttacttttgtagctattgtaaat
s panTro5.chr6             30407359 341 + 175400573 agtgtgaggcctccagttttgttctttttgcttaggattgctttggccatttggggttttttgtgactcca-tatgaattttaggtttttttctatttttctgaagaatgtcattggtattttgataacagggattgtattaaatctgtagactgctttgggtaggatagtcattttaacaatattaattctaatccacaagcatggaatatttttccatttgtttgtgtcctcttcaatttctttcatcagtgttttgtagttttcattaaagaggtctttcacctccttggttaacttcattcccaggtattttat---tttacttttgtagctattgtaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30641593 341 + 173848474 agtgtgaggcctccagttttgttctttttgcttaggattgctttggccatttggggttttttgtgactcca-tatgaattttaggtttttttctatttttctgaagaatgtcattggtattttgataacagggattgtattaaatctgtagactgctttgggtaggatagtcattttaacaatatgaattctaatccacaagcatggaatatttttccatttgtttgtgtcctcttcaatttctttcatcagtgttttgtagttttcattaaagaggtctttcacctccttggttaacttcattcccaggtattttat---tttacttttgtagctattgtaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     349636 341 +   2037526 agtgtgaggcctccagttttgttctttttgcttaggattgctttggccatttggggttttttgtgactcca-tatgaattttaggtttttttctatttttctgaagaatgtcattggtattttgataacagggattgtattaaatctgtagactgctttgggtaggatagtcattttaacaatattaattctaatccacaagcatggaatatttttccatttgtttgtgtcctcttcaatttctttcatcagtgttttgtagttttcattaaagaggtctttcacctccttggttaacttcattcccaggtattttat---tttacttttgtagctattgtaaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75012643 341 + 122973662 agtgtgaggcctccagttttgttctttttgcttaggattgctttggccatttgggtttttttgtgactcca-tatgaattttagttttttttctatttttctgaagaatgtcactggtattttgataacagggattgtattaaatctgtagactgctttgggtaggatagtcattttaacaatattaattctaatccacaagcatggaatacttttccatttgtttgtgtccttttcaatttctttcatcagtgttttgtagttttcattatagaagtctttcaactttttggttaacttcattcccaggtattttat---tttacttttgtagctactgtaaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30902854 341 + 172585720 agtgtgaggcctccagttttgttctttttgcttaggactgctttggccatttggggtcttttgtgactcca-tatgaattttagttttttttctatttttgtgaagaatgtcattggtattttgataaaagggattgtattaaatctgtagattgctttggataggatactcattttaacaatattaattctaatccacaagcatggaatacttttccatttgtttgtgtcctcttcaatttctttcatcagtgttttgcagttttcattatagcggtctctcacctccttggttaacttcactcccaggtattttat---tttacttttgtagctattgtaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30192403 341 - 170955103 agtgtgaagcctccagttttgttctttttgcttaggactgctttggtcatttggggtcttttgtgactcca-tatgaattttagttttttttctatttttgtgaagaatgtcattggtattttgataacagggattgtattaaatctgtagattgctttggataggatagtcattttaacaatattaattctaatccacaagcatggaatatttttccatttgtttgtgtcctcttcaatttctttcatcagtgttttgcagttttcattatagcggtctctcacctccttggttaacttaattcccaggtattttat---tttacttttgtagctattgtaaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     441294 341 +   1495729 agtgtgaggcctccagttttgttctttttgcttaggactgctttggccatttggggtcttttgtgactcca-tatgaattttagttttttttctatttttgtgaagaatgtcattggtattttgataacagggattgtattaaatctgtagattgctttggataggatactcattttaacaatattaattctaatccacaagcatggaatatttttccatttgtttgtgtcctcttcaatttctttcatcagtgttttgcagttttcattatagcggtctctcacctccttggttaacttcactcccaggtattttat---tttacttttgtagctattgtaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     544907 341 -    863181 agtgtgaagcctccagttttgttctttttgcttaggactgctttggccatttggggtcttttgtgactcca-tatgaattttagttttttttctatttttgtgaagaatgtcattggtattttgataacagggattgtattaaatctgtagattgctttggataggatagtcattttaacaatattaattctaatccacaagcatggaatatttttccatttgtttgtgtcctcttcaatttctttcatcagtgttttgcagttttcattatagcggtctctcacctccttggttaacttcactcccaggtattttat---tttacttttgtagctattgtaaat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29691630 341 -  71996105 agtgtgaagcctccagttttgttctttttgcttaggactactttggccatttggggtcttttgtgactcca-tatgaattttagttttttttctatttttgtgaagaatgtcattggtattttgataacagggattgtattaaatctgtagattgctttggataggatagtcattttaacaatattaattctaatccacaagcatggaatatttttccatttgtttgtgtcctcttcaatttctttcatcagtgttttgcagttttcattatagtggtctctcacctccttggttaacttcactcccaggtattttat---tttacttttgtagctattgtaaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     427146 341 -    735854 agtgtgaagcctccagttttgttctttttgcttaggactgctttggccatttggggtcttttgtgactcca-tatgaattttagttttttttctatttttgtgaagaatgtcattggtattttgataacagggattgtattaaatctgtagattgctttggataggatagtcattttaacaatattaattctaatccacaagcatggaatatttttccatttgtttgtgtcctcttcaatttctttcatcagtgttttgcagttttcattatagcggtctctcacctccttggttaatttcactcccaggtattttat---tttacttttgtagctattgtaaat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     334159 341 -   1829203 agtgtgaggcctccagttttgttctttttgcttaggattgctttggccatttggggtcttttgtgactcca-tatgaattttagttttttttctatttttgtgaagaatgtcattggtattttgataacagggattgtatcaaatctgtagattgctttgggtaggatagtcattttaacaatattaattctaatccaggagcatggaatatttttccatttgtttgtgtcctctttaatttctttcatcagtgttttgtagttttcattatagcggtctcttacctccttggttaacttaattcccaggtattttat---tttacttttgtagctactgtaaat
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           325940 336 +    515838 agtgtaaggcctcgagctttgttcttcttgcttaggattgctttggctattcggggtcttttgtgactcca-cataaattttagg-ttttttctatttttgtgaggaatgtcattggtattttgataatagggattgtactgaatctgtaaattgctttggttaggat----attttaacaatataaattctaatccatgagcatagaatatttttccatttgtttgtgttctcttcaatttctttcatgagtgttttgtagttttaattatagaggtcttttacctccttagttaacttctttcccaggtattttat---tttacttttgtagctattgtaaat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     956410 333 -   1771730 agtgtgaggcctccagctttgttcttcttgctccggactgctttggttatttggggtcttttgtgactcca-tataaattttagg-tttttactatttttgtgaggaatgtcattggtattttgataatagggattgtattgaacctgtaaattgctttggttaggat----attttaacaatattaattctaatccatgagcatggaatacttttccatttatttgtg---tcttcgatttctttcatgagtgttttgtagttttaattatagaggtcttttacctccttggttaacttcattcccaggtattttat---tttacttttgtagctatggtaaat
i cebCap1.NW_016107755v1   I 5 C 0
s otoGar3.GL873550           382081 197 +  18854210 agtatgatgactctagctttgttatttttgctcaggatggcttttgttatttggcctcttttttggttccattgtgaatttta----------------------gaatgtcttt----------------------------------------------------------ttttaa--------------------------------------------------------------------atcagtgttttgtagtttttattgtagaagtctttcaccttctttagtaaattcaactctaagtatttcagttattttttttagtagtgactataaat
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I
e aotNan1.NW_018496901v1     140323 657 -    486031 I
e calJac3.chr4             30522219 723 + 171630274 I

a score=485814.000000
s hg38.chr6_GL000254v2_alt  1537869 49 +   4827813 ggggttgctttcttgatgtc-ttttttagctagtttgttattggtgtatt
s panTro5.chr6             30407700 49 + 175400573 ggggttgctttcttgatgtc-ttttttagctagtttgctattggtgtatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30641934 49 + 173848474 ggggttgctttcttgatgtc-ttttttagctagtttgctattggtgtatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     349977 48 +   2037526 gggattgctttcttgatgtc--tttttagctagtttgttattggtgtatt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75012984 49 + 122973662 ggtgttgctttcttgatgtc-ttttttagctagtttgttattggtgtatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30903195 49 + 172585720 ggggttgctttattgatgtc-ttttttagctagtttgttattggtgtatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30192744 49 - 170955103 ggggttgctttattgatgcc-ttttttagctagtttgttattggtgtatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     441635 49 +   1495729 ggggttgctttattgatgtc-ttttttagctagtttgttattggtgtatt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     545248 49 -    863181 ggggttgctttattgatgtc-ttttttagctagtttgttattggtgtatt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29691971 49 -  71996105 ggggttgctttattgatgtc-ttttttagctagtttgttattggtgtatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     427487 49 -    735854 ggggttgctttattgatgtc-ttttttagctagtttgttattggtgtatt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     334500 49 -   1829203 ggggttgctttattgatgtc-ttttttagctagtttgttattggtgtatt
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           326276 49 +    515838 ggggttgctttcttgatgtc-ttttttagctagtttgttattggtgcatt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     956743 49 -   1771730 ggggttgctttcttgatgtc-ttttttagctagtttgttattggtgcatt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     140980 50 -    486031 ggggttgctttcttgatgtctttttttagctagtttgttattggtgcatt
i aotNan1.NW_018496901v1   I 657 C 0
s otoGar3.GL873550           382278 49 +  18854210 gggattgctatctcaatttc-tttttcagctagttggttactggtttatg
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I
e calJac3.chr4             30522219 723 + 171630274 I

a score=1553333.000000
s hg38.chr6_GL000254v2_alt  1537918 151 +   4827813 aaaaatgcagta--gactttt-tatgttga-ttttgtatcctgcaactttactgaatttgttt-attagttctaagggttttttggt-ggggccttta-ggtttttctacatataagtatagccgttacggaaaacagtatgagagtttctcaaaaaa
s panTro5.chr6             30407749 151 + 175400573 aaaaatgcagta--gactttt-tatgttgg-ttttgtatcctgcaactttactgaatttgttt-attagttctaagagttttttggt-ggggccttta-ggtttttctacatataagtatagccgttacggaaaacagtatgagagtttctcaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30641983 151 + 173848474 aaaaatgcagta--gactttt-tatgttga-ttttgtatcctgcaactttactgaatttgttt-attagttctaagagttttttggt-ggggccttta-ggtttttctacatataagtatagccgttacggaaaacagtatgagagtttctcaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     350025 151 +   2037526 aaaaatgcagta--gactttt-tatgttga-ttttgtatcctgcaactttactgaatttgttt-attagttctaagagttttttggt-ggggccttta-ggtttttctacatataagtatagccgttatggaaaacagtatgagagtttctcaaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75013033 147 + 122973662 aaaaatgcagta--gactttt-tatgttga-ttttgtatcctgcaactttactgaa----ttt-attagttctaagagctttttggt-ggggccttta-ggtttttctccatataagtacaaccgttatggaaaacagtatgagagtttctcaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30903244 151 + 172585720 aaaaatgcagtg--gactttt-tatgttga-ttttgtatcctgcaacgttactgaatgtgttt-attagttctaagagtttcttggt-ggggccttta-ggtttttccacatataagtacagccgttatggaaaacagtatgagagtttctcaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30192793 151 - 170955103 aaaaatgcagta--gactttt-tatgttga-ttttgtatcctgcaactttactgaatttgttt-attagttctaagagtttcttggt-ggggccttta-ggttttcctacgtataagtatagctgttatggaaaacagtatgagagtttctcaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     441684 151 +   1495729 aaaaatgcagta--gagtttt-tatgttga-ttttgtatcctgcaactttactgaatttgttt-attagttctaagagtttcttggt-ggggccttta-ggtttttctacatataagtatagccgttatggaaaacagtataagagtttctcaaaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     545297 151 -    863181 aaaaatgcagtg--gactttt-tatgttga-ttttgtatcctgcaactttactgaatttgttt-atcagttctaagagtttcttgct-ggggccttta-ggtttttccacatgtaagtatagccgttatggaaaacagtatgagagtttctcaaaaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29692020 151 -  71996105 aaaaatgcagtg--gactttt-tatgttga-ttttgtatcctgcaactttactgaatttgttt-attagttctaagagtttcttggt-ggggccttta-ggtttttccacatataagtatagccgttatggaaaacagtatgagagtttctcaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     427536 152 -    735854 aaaaatgcagtg--gactttt-tatgttga-ttttgtatcctgcaactttactgaatttgtttaatcagttctaagagtttcttgct-ggggccttta-ggtttttccacatataagtatagccgttatggaaaacagtatgagagtttctcaaaaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     334549 151 -   1829203 aaaaatgcagta--gactttt-tatgttga-ttttgtatcctgcaactttactgaatttgttt-attagttctaagagttttttggt-ggggccttta-ggtttttctacatgttagtatagccgttacggaaaacagtatgagagtttctcaaaaca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30522942 152 + 171630274 aaacaagcaata--cattttt-tatgttga-ttttgtatcctgcaactttactgaatttgttt-attagttctaagagtttgtttctaagggccttta-ggttttgctacatataagtacagccattatggaaaacagtatgagagtttctcaaaaaa
i calJac3.chr4             I 723 C 0
s saiBol1.JH378341           326325 153 +    515838 aaaaatgcaata--tattttt-tatgttgatttttgtatcctgcaactttactgaatttgttt-attagttctaagagtttgtttctaagggcctata-ggttttgctacatataagtacagccattacggaaaatagtatgagagtttctcaaaaaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     956792 149 -   1771730 aaaaatgcaata--cattttt-tatgttga-ttttgtatcctgcaactttactgaa----ttt-attagttctaagagtttgtttctaagggcctttagggttttgctacatataagtacagcaattatggaaaatagtatgagagtttctcaaaaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     141030 151 -    486031 aaaaatgcaata--tattttt-tatattga-ttttgtatcctgcaacttta-tgaatttgttt-attagttctaagagtttgtttctaagggccttta-ggtttttctacatataagtacagccattatggaaaatagtatgagagtttctcaaaaaa
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           382327 145 +  18854210 ------gcactactgatttttgcatgttga-tagtgtatttgacaactttactgaatttgctt-tttagttct--gagtttcctggt-agagaattta-agtttttctctatataaatacaggcagtattaaaaaca-tatggaggtttctcaaaaaa
i otoGar3.GL873550         C 0 I 277
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I

a score=2011691.000000
s hg38.chr6_GL000254v2_alt  1538069 186 +   4827813 ctaaaaatagaactaccatatgatccagcaatctcattactaggtatttatccaaagaaaagaaaatcagtatatcaaagggatacctgcacactcatgtttattgtggcactattcacaatagttgagatgtggactcaatctaagcatccatcaacagatagataaagaaaatgtagcatatat
s panTro5.chr6             30407900 186 + 175400573 ctaaaaatagaactaccatatgatccagcaatctcattactaggtatttatccaaagaaaagaaaaccggtatatcaaagggatacctgcacactcatgtttattgtggcactattcacaatagttgagatgtggactcaatctaagcatccatcaacagatagataaagaaaatgtagcatatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30642134 186 + 173848474 ctaaaaatagaactaccatatgatccagcaatctcattactaggtatttatccaaagaaaagaaaaccggtatatcaaagggatacctgcacactcatgtttattgtggcactattcacaatagttgagatgtggactcaatctaagcatccatcaacagatagataaagaaaatgtagcatatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     350176 186 +   2037526 ctaaaaatagaactaccatatgatccagcaatctcattactaggtatttatccaaagaaaagaaaatcagtatatcaaagggatacctgcacactcatgtttattgtggcactattcacgatagttcagatgtggactcaatctaagcatccatcaacagatagataaagaaaatgtagcatatat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75013180 183 + 122973662 ctaaaaatagaattaccatatgatccagcaatctcattactaggtatttatccgaaaaaaagaaaaccagtatatcaaagggatacctgcacactcacgt---ttgtggcactattcacaatagttgagatgtggactcaatctaagcatccatcgacagacagataaagaaaatgtagtatatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30903395 186 + 172585720 ctaaaaatagaactaccatatgatccagcaatctcattaccaggtatttatccaaagaaaagaaaatcagtatatcaaagggatacctgcacactcatgtttatcgtggcactgctcacaatagctgagatgtggactcaatctaagcatccatcagcatacaaataaagaaaatgtagtatatat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30192944 186 - 170955103 ctaaaaatagaactaccatatgatccagcaatctcattactaggtatttatccaaagaaaagaaaatcagtatatcaaagtgatacctgcacactcatgtttatcgtggcactgttcacaatagctgagatgtggactcaatctaagcatccatcagcatacaaataaagaaaatgtagtatatat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     441835 186 +   1495729 ctaaaaatagaactaccatatgatccagcaatctcattactaggtatttatccaaagaaaagaaaatcagtatatcaaagtgatacctgcacactcatgtttatcgtggcactgttcacaatagctgagatgtggactcaatctaagcatccatcagcatataaataaagaaaatgtagtatatat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     545448 186 -    863181 ctaaaaatagaactaccatatgatccagcaatctcattaccaggtatttatccaaagaaaagaaaatcagtatatcaaagggatacctgcacactcatgtttatcgtggcactgttcacaatagctgagatgtggactcaatctaagcatccatcagcatacaaataaagaaaatgtagtatatat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29692171 186 -  71996105 ctaaaaatagaactaccatatgatccagcaatctcattaccaggtatttatccaaagaaaagaaaatcagtatatcaaagggatacctgcacactcacgtttatcgtggcactgttcacaatagctgagatgtggactcaatctaagcgtccatcagcatacaaataaagaaaatgtagtatatat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     427688 186 -    735854 ctaaaaatagaactaccatatgatccagcaatctcattaccaggtatttatccaaagaaaagaaaatcagtatatcaaagggatacctgcacactcatgtttatcgtggcactgttcacaatagctgagatgtggactcaatctaagcatccatcagcatacaaataaagaaaatgtagtatatat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     334700 186 -   1829203 ctaaaaatagaactaccatatgatccagcaatctcattactaggtatttatccaaagaaaagaaaatcagaatatcaaagggatacctgaacactcatgtttatcgtggcactgttcacaatagctgagatgtggactcaatctaagcatccatcaacatataaataaagaaaatgtagtatatat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30523094 181 + 171630274 ctaaaaatagaagtaccatatgatccagcaacctcattactaggtatttatctgaagaaaagaaaatcagtatatcaaagggatacctgcacacgcatgttttttgcagcactattcacaatagctgagatatggactcaatctaagcatcaatcaac----agataaagaaaatgtggtatata-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           326478 182 +    515838 ctaaaaatgtaagtaccatatgatccagcaatctcattactaggtatttatctgaagaaaagaaaatcagtatatcaaagggatacctgcacactcatgtttattgtagcactattcacaatagctgagatatggactcaatctaagcatccatcaac----agataaagaaaatgtggtatatac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     956941 182 -   1771730 ctaaaaatgaaagtaccatatgatccagcaatctcattaataggtatttatctgaagaaaagaaaatcagtatatcaaagggatacctacacactcatgtttattgcagcactattcacaatggctgagatatggactcaatctaagcatcaatcaac----agataaagaaaatgtggtatatat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     141181 182 -    486031 ctaaaattagaagtactgtatgatccagcaatctcattattaggtatttatctgaagaaaagaaaatcagtatatcaaagggatacctgaacactcatgtttattgcagcactattcacaatagctgagatatggactcaatctaagcatcgatcaac----agataaagaaaatgtggtatatat
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           382749 186 +  18854210 ctacaactagaactaccatataatccaaaaatcccactattagctatttatccataggaaaggaaatcagtgtatcaaagggattcctgcacacccatgtttattgcaacactattcacaacagctaagacagagaaccaaccttagtgtccaccaacaagtggataaagaaaataaagtatagag
i otoGar3.GL873550         I 277 I 469
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I

a score=4316191.000000
s hg38.chr6_GL000254v2_alt  1538255 466 +   4827813 -----acacaatggagtactattcatccataataaatttgagttcatggaagtaagacagtagaatagtaatgatt-------------------------agaggttgggaagggggctggggagaggagggtggggagaagttggttaacagatacaaagttatagctac-atgggaagaataaattctagtgttgtgcagcattgcagggagaatataattaactataatttactatacattttcaaaaagctagaagagaggattttgaatgttccaacacaaagaaatgataagtgtttgaggtgacagatatactaattactctgagttgattattatatattatatacttgtatcaaagtatcactctaggccaggcacagtggctcacgcctgtaatcccagcactgtgggaggctgaggcaggcgatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaacgctgactctaccaa
s panTro5.chr6             30408086 466 + 175400573 -----acacaatggagtactattcatccataataaatttgagttcatggaagtaagacagtagaatagtaaggagt-------------------------agaggctgggaagggggctggggagaggagggtggggagaagttggttaacagatacaaagttatagctac-atgggaagaataaattctagtgttgtgcagtattgcagggagaatataattaaccataatttactatacattttcaaaaagctagaagagaggattttgaatgttccaacacaaagaaatgataagtgtttgaggtgacagatatactaattactctgagttaattattatatattatatacatgtatcaaagtatcactctaggccaggcacagtggctcacgcctgtaatcccagcactgtgggaggctgaggcaggcgatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgactctaccaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30642320 466 + 173848474 -----acacaatggagtactattcatccataataaatttgagttcatggaagtaagacagtagaatagtaaggagt-------------------------agaggctgggaagggggctggggagaggagggtggggagaagttggttaacagatacaaagttatagctac-atgggaagaataaattctagtgttgtgcagtattgcagggagaatataattaaccataatttactatacattttcaaaaagctagaagagaggattttgaatgttccaacacaaagaaatgataagtgtttgaggtgacagatatactaattactctgagttaattattatatattatatacatgtatcaaagtatcactctaggccaggcacagtggctcacgcctgtaatcccagcactgtgggaggctgaggcaggcgatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgactctaccaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     350362 466 +   2037526 -----acacaatggagtactattcatccataataaatttgagttcatggaagtaagacagtagaatagtaaggatt-------------------------agaggctgggaagggggctggggagaggagagtggagagaagttggttaacagatacaaagttatagctac-atgggaagaataaattctagtgttgtgcagcattgcagggagaatataattaactataatttactatacattttcaaaaagctagaagagaggattttgaatgttccaacacaaagaaatgataagtgtttgaggtgacagatatactaattactctgagttgattattatatattatatacatgtatcaaagtatcactctaggccaggcacagtggctcacgcctgtaatcccagcactgtgggaggctgaggcaggcgatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgattctaccaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75013363 464 + 122973662 -----acacaatggagtactattcatccataataaatttgagttgatggaagtaagacagtagaacagtaaagatt-------------------------agaggctgggaagggggctggggagaggagggtggggagaagttggttaacagatacaaagttacagctac-atgggaagaataaattctagtgttgtacagcattgcagggagaatataattaactataatttactatacattttcaaaaagctagaagagaggattttgaatgttccaacacaaagaaatgataagtgtttgaggtgacagatatactaatta--ctgagttgattattatatattatatacatgtatcaaagcatcactctaggccaggcacagtggctcatgcctgtaatcctagcactttgggaggctgaggcaggcgatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgactctaccaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30903581 448 + 172585720 -----atacaatggagtactattcatccataataaatttgagttcatggaagt-agagagtagaaaaataaggatt-------------------------agaggctgggaagggggctggggagagaagggtaggtagaaactggttaaaggacacaaagttacagctac-atgggaagaaaaaattctagtgttgtgcagcattgtagggagaataccattaactataatttaccacacattttcaaaaagctagaagagaggattttgaatgttccaacacaaagaaatgataagtgtttgaggtgatagatatactaattactctgagttgattattatatattacatacatgtatcaaaataacactctaggccaggcacggtggctcatgcctgtaatcccagcactttgggagg-----------------cagaggtcaggagttcaagagcagcctggccaacatgatgaaaccctgactctaccaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30193130 444 - 170955103 -----atacaatggagtactattcatccataataaatttgagttcatggaagt-agagagtagaataataaggatt-------------------------agaggctgggaagggggctggggagaggagggtagggagaaactggttaaaggacacaaagttacagctac-acgggaagaataaattctagtgttgtgcagcattgtagggagaataccattaactataatttaccacacattttcaaaaagctagaagagaggattttgaatgttccaacacaaagaaatgataagtgtttgaggt----gatatactaattactctgagttgattattatatattacatacatgtatcaaaataacactctaggccaggcacggtggctcatgcctgtaatcccagcactttgggagg-----------------ctgaggtcaggagttcaagaccagcctggccaacatgatgaaaccctgactctaccaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     442021 448 +   1495729 -----atacaatggagtactattcatccataataaatttgagttcatggaagt-agagagtagaataataaggatt-------------------------agaggctgggaagggggttggggagagaagggtagggagaaattggttaacggatacaaagttatagctac-acgggaagaataaattctagtgttgtgcagcattgtagggagaataccattaacaataatttactacatattttcaaaaagctagaagagaggattttgaatgttccaacacaaagaaatgataagtgtttgaggtgatagatatactaattactctgagttgattattatgtattacatacatatatcaaaataacactctaggccaggcacagtggctcatgcctgtaatcccagcactttgggagg-----------------cagaggtcaggagttcaagaccagcctggccaacatgatgaaaccctgactctaccaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     545634 448 -    863181 -----atacaatggagtactattcatccataataaatttgagttcatggaagt-agagagtagaaaaataaggatt-------------------------agaggctgggaagggggctggggagaggagggtagggagaaactggttaaaggacacaaagttacagctac-atgggaagaaaaaattctagtgttgtgcagcattgtagggagaataccattaactataatttaccacacattttcaaaaagctagaagagaggattttgaatgttccaacacaaagaaatgataagtgtttgaggtgatagatatactaattactctgagttgattattatatattacatacatgtatcaaaataacactctaggccaggcacggtggctcatgcctgtaatcccagcactttgggagg-----------------ctgaggtcaggagttcaagaccagcctggccaacatgatgaaaccctgactctaccaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29692357 448 -  71996105 -----atacaagggagtactattcatccataataaatttgagttcatggaagt-agagagtagaataataaggatt-------------------------agaggctgggaagggggctggggagaggagggtagggagaaactggttaaaggtcacaaagttacagctac-atgggaagaaaaaattctagtgttgtgcagcattgtagggagaataccattaactataatttaccacacattttcaaaaagctagaagagaggattttgaatgttccaacacaaagaaatgataagtgtttgaggtgatagatatactaattactctgagttgattattatatattacatacatgtatcaaaataacactctaggccaggcacggtggctcatgcctgtaatcccagcactttgggagg-----------------ctgaggtcaggagttcaagaccagcctggccaacatgatgaaaccctgactctaccaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     427874 448 -    735854 -----atacaatggagtactattcatccataataaatttgagttcatggaagt-agagagtagaaaaataaggatt-------------------------agaggctgggaagggggctggggagaggagggtagggagaaactggttaaaggacacaaagttacagctac-atgggaagaaaaaattctagtgttgtgcagcattgtagggagaataccattaactataatttaccacacattttcaaaaagctagaagagaggattttgaatgttccaacacaaagaaatgataagtgtttgaggtgctagatatactaattactctgagttgattattatatattacatacatgtatcaaaataacactctaggccaggcacggtggctcatgcctgtaatcccagcactttgggagg-----------------ctgaggtcaggagttcaagaccagcctggccaacatgatgaaaccctgactctaccaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     334886 448 -   1829203 -----atacaatggagtactattAATCCAtaataaatttgagttcatggaagt-agagtgtagaataataaggatt-------------------------agaggctgggaagggggttggggagaggagggtagggagaaactggttaacggatacaaagttatagctac-atgggaaggataaattctagtgttgtgcagcattgtagggtgaataccattaactataatttactacacattttcaaaaagctagaagagaggattttgaatgttccaacacaaagatatggtaagtgtttgaggtgataggtatactaattactctgagttgattattatatattatatacatgtatcaaaataacactctaggccaggcatggtggctcatgcctgtaatcccagcactttgggagg-----------------ctgaggtcaggagttcaagaccagtctggccaacatgatgaaaccctgactctaccaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30523275 432 + 171630274 -----acacaacagaatactattcatccataataagtttgagttcatggaagt-agagagtagaatag---------------------------------taaggc--------------------------tgggaagaagttggttaatggatacaaagttacagctacaatgggaagaataaattctagtgttatgcagcatagcagggagaatatcattaactaccatttattgtacattctctaaaaactagaagagaggattttgaatgttccaacacaaagaaataatacgtgtttgaagtgacagatacgctaattgctctgagttaattattatatattatatacaggtatcaaaatatcactctaggcagggtacagtggctcacacctgtaatcccagcacttcaggaagctgaggcaggcgatcacctgaggtcagaagttcgagaccaacctggccaacatggtgaaaccctgtcgttactaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           326660 462 +    515838 tgtagacacaacagaatactattcatccataataaacttgagttcatggaagt-agagagtagaatag---------------------------------taaggctgggaagggggctgggaaggggagggtgggaagaagttggttaatggatacaaagttacagctac-atggtaagaacaaattctagtgttgtacagcatagcagggagaatatcattaactaccatttattgtacattctctaaaaactagaagagaggattttgaatgttctaacacaaagaaacaataagtgtttgaggtgatagatatgctaattgctctgagttgattattatatattatatacaggtatcaaaatatcactctaggcagggcacggtggctcacacctgtaatctcagcacttcgggaggctgaggtaggcaatcacctgaggtcagaagttcgagaccagcctggccaacatggtgaaaccctgtctttactaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     957123 490 -   1771730 -----acacaacggaatactattcatccgtaataaatttgagttcatggaagt-agagagtagaatcataaggattacttactaagtagagagtagaatcctaaggctgggaagagggctgggaaggggagggtgggaagaagttggttaacggatataaagttacagctac-atgggaagaataaattctagtgttgtgcagcatagcagggagaatatcattaactaccacttattgtacattctctaaaaactagaagagaggattttgaatgttccaacacaaagaaacgataagtgtttgaggtgatagatatgctaattgctctgagtttattattatatatgatatacaaatatcaaaatatcactctaagcagggcacagtggctcacacctgtaatcccagcacttcgggaggctgaggcaggcaatcacctgaggtcagaagttcgagactagcctggccaacatggtgaaaccctgtctctactaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     141363 490 -    486031 -----acacaacagaatactattcatccataataaaTttgagttcatggaagt-agagagtagaatagtaaggattacttactaagtagagagtagaatagtaaggcttggaagggggctgggaagaggagggtgggaagaagttggttaatggatacaaagttacagctac-atgggaagaataaattctagtgttgtgcagcatagtagggagaatatcattaactaccatttactgtacattctctaaaaactagaagagaggattttgaatgttccaacacaaagaaacaataagtgtttgaggtgacagatatgctaattgctctgagttgattattatatattatatacaggtatcaaaatatcactctaggcagggcatggtggctcacacctgtaatcccagcacttcgggaggctgaggcaggcgatcacctgaggtcagaagttcgagaccagcctggccaacatggtgaaaccctgtctttactaa
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I
e otoGar3.GL873550           382935 469 +  18854210 I

a score=905898.000000
s hg38.chr6_GL000254v2_alt  1538721 91 +   4827813 aaatacagaaaatagccaggtgtggtgatgtgcgcctgtaatcccagctatttgggaggctgaggcaggagaatcgcttgaacccaggaga
s panTro5.chr6             30408552 91 + 175400573 aaatacagaaaatagccaggtgtggtgatgtgcgcctgtaatcccagctatttgggaggctgaggtaggagaatcgcttgaacccaggaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30642786 91 + 173848474 aaatacagaaaatagccaggtgtggtgatgtgcgcctgtaatcccagctatttgggaggctgaggtaggagaatcgcttgaacccaggaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     350828 91 +   2037526 aaatacagaaaataaccaggtgtggtgatgtgcgcctgtaatcccagctatttgggaggctgaggcaggagaatcgcttgaacccaggaga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75013827 91 + 122973662 aaatacagaaaatagccaggtgtggtgatgtgcacctgtaatcccagctacttgggaggctgaagcaggagaatcgcttgaacccaggaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30904029 91 + 172585720 aaatacaaaaattagccaggtgtggtgacgcgcacctgtaatccgagttacttgggaggctgaggcaggagaatcgcttgaacccaggagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30193574 91 - 170955103 aaatacaaaaattagccaggtgtggtgacgcgcacctgtaatccgagttacttgggaggctgaggcaggagaatcgcttgaacccaggagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     442469 91 +   1495729 aaatacaaaaattagccaggtgtggtgacgcgcacctgtaatccgagttacttgggaggctgaggcaggagaatcgcttgaacccaggagg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     546082 91 -    863181 aaatacaaaaattagccaggtgtggtgacgcacacctgtaatccgagttacttgggaggctgaggcaggagaatcgcttgaacccaggagg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29692805 91 -  71996105 aaatacaaaaattagccaggtgtggtgacgcgcacctgtaatccgagttacttgggagactgaggcaggagaatcgcttgaacccaggagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     428322 91 -    735854 aaatacaaaaattagccaggtgtggtgacgcacacctgtaatccgagttacttgggaggctgaggcaggagaatcgcttgaacccaggagg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     335334 91 -   1829203 aaatacaaaaattagccaggtgtggtgacgcgcacctgtaatcccagttactcgggaggctgaggcaggagagtcgcttgaacccaggagg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30523707 91 + 171630274 aaatacaaaaactagcggggtgtggtggcgcgcacctgtaatcccagctacttgggaggctgagggaggagaatcacttgaacccaggagg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           327122 91 +    515838 aaatgcaaaaactagccgggtgtggtggcgtgcacctgtaatcccagctacttgggaggccgagggaggagaatcacttgaacccaggagg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     957613 90 -   1771730 aaata-aaaaactagccgggtgtggtggcgcacacctgtaatcccagctacttgggaggctgagagaggagaatcacttgaacccaggagg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     141853 91 -    486031 aaatacaaaaactagccgggtgtggtggcacacacctgtaatcccagctacttgggaggctgagggaggagaatcacttgaacccagaagg
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           383404 78 +  18854210 gactacaggagccagctataTTtagagatgaggtc---tcactctagcta------aggctga--tctgaaagtcg--tgagctcaggcaa
i otoGar3.GL873550         I 469 I 115
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I

a score=1081561.000000
s hg38.chr6_GL000254v2_alt  1538812 112 +   4827813 cagaggttgcagaggcaggagaattgcttcaacccaggaggcggagattacagtgagctgagatcacgccactgcactccagcctgggagacagagcgagactctgtctcaa---
s panTro5.chr6             30408643 112 + 175400573 cagaggttgcagaggcaggagaattgcttcaacccaggaggcggagattacagtgagctgagatcacaccactgcactccagcctgggagacacagcgagactctgtctcaa---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30642877 112 + 173848474 cagaggttgcagaggcaggagaattgcttcaacccaggaggcggagattacagtgagctgagatcacaccactgcactccagcctgggagacacagcgagactctgtctcaa---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     350919 112 +   2037526 cagaggatgcagaggcaggagaattgcttcaacccaggaggcggagattacagtgagctgagatcacgccattgcactccagcctgggagacagagcgagactctgtctcaa---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75013918 112 + 122973662 cagaggttgtggaggcaggagaattgcttcaacccaggaggcagaggttacagtgagctgagatcacgccactacattccagcctgggagacagagcgagactctgtctcaa---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30904120 112 + 172585720 cacaggttgcagaggcaggagaactgcttcaacccaggaggcggaagttgcagtgagctaagattacaccattgcactccagcctgggagacagagcgagactctgtctcaa---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30193665 112 - 170955103 cacaggttgcagaggcaggagaattgcttcaacccaggaggcggaggttgcagtgagctaagattacaccactgcactccagcctgggagacagagcgagactctgtctcaa---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     442560 112 +   1495729 cacaggttgcagaggcaggagaactgcttcaacccaggaggcggaagttgcagtgagctaagattacaccattgcactccagcctgggagacagagcgagactctgtctcaa---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     546173 112 -    863181 cacaggttgcagaggcaggagaattgcttcaacccaggaggcggaggttgcagtgagctaagattacaccactgcactccagcctgggagacagagcgagactctgtctcaa---
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29692896 112 -  71996105 cacaggttgcagaggcaggagaattgcttcaacccaggaggtggaggttgcagtgagctaagattacaccactgcactccagcctgggagacagagcgagactctgtctcaa---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     428413 112 -    735854 cacaggttgcagaggcaggagaattgcttcaacccaggaggcggaggttgcagtgagctaagattacaccactgcactccagcctgggagacagagcgagactctgtctcaa---
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     335425 111 -   1829203 cagaggttgcagaggcagaagaattgcttcaatccaggaggtggaggttgcagtgagctaagattaca-cactgcactccagcctgggagacagagcaagactctgtctcaa---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30523798 115 + 171630274 cagaggttgaagaggcaagagaattgcttgaaccaaggaggcagaggttgcagtgaaccgagactgcaccactgtactctagcctgggagacagagtgagactctgtctcaaaac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           327213 115 +    515838 cagaagttgcagaggcaggcgaactgcttgaaccaaggaggcggaggttgcagtgaaccaagactgcgccactgtactctagcctgggagacagagtgagactctgtctcaaaac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     957703 115 -   1771730 cagaagttgcagaggcaggataattgcttgaaccgaggaggcagaggttgtggtgaactgagactgcaccactgtactctagcctgggagacagagtgagactctgtctcaaaac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     141944 115 -    486031 cagaggttgcagaggcaggagaattgcttgaactgaggaggcggaggttgcagtgaaccgagactgcaccactgtactctagcctgggagacagagtaagactctgtctcaaaac
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I
e otoGar3.GL873550           383482 115 +  18854210 I

a score=549110.000000
s hg38.chr6_GL000254v2_alt  1538924 63 +   4827813 aaataaac---aaacaaaaacctctacatcccataa--atatatacattatatagc------actaaaattaaa
s panTro5.chr6             30408755 63 + 175400573 aaacaaac---aaacaaaaacctctacatcccataa--atatatacattacatagc------actaaaattaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30642989 63 + 173848474 aaacaaac---aaacaaaaacctctacatcccataa--atatatacattacatagc------actaaaattaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     351031 63 +   2037526 aaacaaac---aaacaaaaacctctacatcccataa--atatatacattacatagc------actaaaattaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75014030 59 + 122973662 ----aaac---aaacaaaaacctctatattccataa--atatatacaTTACATAGC------ACTAAAGTTAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30904232 66 + 172585720 aaacaaacaaaaaacaaaaacctctatatcccaaaa--atatatacattacatagc------actaaaaataaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30193777 66 - 170955103 aaacaaacaaaaaacaaaaacctctatatcccataa--atatatacattacatagc------actaaaaataaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     442672 66 +   1495729 aaacaaacaaaaaacaaaaacctctatatcccaaaa--atatatacattacatagc------actaaaaataaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     546285 63 -    863181 aaacaaac---taacaaaaacctctatatcccataa--atacatacattacatagc------actaaaaataaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29693008 59 -  71996105 aaaca-------aacaaaaacctctatatcccataa--atatatacattacatagc------actaaaaataaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     428525 63 -    735854 aaacaaac---taacaaaaacctctatatcccataa--atatatacattacatagt------actaaaaataaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     335536 63 -   1829203 aaacaaat---aaacaaaaacctccatatcccataa--atatatacattacatagc------actaaaaataaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30523913 62 + 171630274 aaacaaac---aaacaaaaa---ctatatcccataaatatatatatattacacagc------actaaaaataaC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           327328 62 +    515838 aaacaaac---aaacaaaaa---ctatatcccataaatatatatacattacacagc------actaaaaataaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     957818 62 -   1771730 aaacaaac---aaacaaaaa---ctatatcccataaacatatatacattacacagc------actaaaaataaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     142059 62 -    486031 aaacaaac---aaataaaaa---ctatatcccataaatatatatacgttacacagc------actaaaactaaa
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           383597 69 +  18854210 atatacat---agatcaaaattactcttatccctaa--atctgtacaattattattgtctcaactaaaaataaa
i otoGar3.GL873550         I 115 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58131126 2087 -  94987271 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I

a score=740715.000000
s hg38.chr6_GL000254v2_alt  1538987 75 +   4827813 agagaaaacacaaaacaaaaaaagaaacctaccagtaccaataacatTTCCTATACTAGTTTCAAGCTGACG-CCA
s panTro5.chr6             30408818 75 + 175400573 agagaaaacacaaaactaaaaaagaaacctaccagtaccaataacatTTCCTATACTAGTTTCAAGCAGACA-CCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30643052 74 + 173848474 agagaaaacacaaaac-aaaaaagaaacctaccagtaccaataacatTTCCTATACTAGTTTCAAGCAGACA-CCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     351094 75 +   2037526 aGAGAAAACACAAAACAAAAAAAGAAACCTACCAGTACCAATAGCATTTCCTATACTAGTTTCAAGCAGACA-CCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75014089 75 + 122973662 AGAGAAAACACAAAACAAAAAAAGAAACCTACCAGTACCAATAACATTTCCTATACTAGTTTCAAGCAGACA-CCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30904298 71 + 172585720 aGAGAAAACACAAAACAAAAAAAGAA----ACCAGTACCAACAACATTTCCTATACTAGTTTCAAGCAGACA-CCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30193843 70 - 170955103 agagaaaacacaaaaC-AAAAAAGAA----ACCAGTACCAATAACATTTCCTATACTAGTTTCAAGCAGATA-CCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     442738 71 +   1495729 aGAGAAAACACAAAACAAAAAAAGAA----ACCAGTACTAATAACATTTCCTATACTAGTTTCAAGCAGACA-CCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     546348 70 -    863181 aGAGAAAACACAAAAC-AAAAAAGAA----ACCAGTACCAATAACATTTCCTATACTAGTTTCAAGCAGATA-CCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29693067 70 -  71996105 agagaaaacacaaaaC-AAAAAAGAA----ACCAGTACCAATAACATTTCCTATACTAGTTTCAAGCAGATA-CCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     428588 70 -    735854 aGAGAAAACACAAAAC-AAAAAAGAA----ACCAGTACCAATAACATTTCCTATACTAGTTTCAAGCAGATA-CCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     335599 71 -   1829203 aGAGAAAACACAAAACAAAAAAAGAA----ACCAGTACCAATAACATTTCCTATACTAGTTTCAAGCAGACA-CCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30523975 74 + 171630274 AGAGAAAACATAAAAC-AAAAAAGAAACCCACCAGTACCAATAACATTTCCTGTACTAGTTTCAAGCAGACA-CCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           327390 75 +    515838 agagaacacataaaac-aaaaaagaaacccaccagtaccaataacatTTCCTGCACTAGTTTCAAGCAGACACCCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     957880 74 -   1771730 aGAGAAAACATAAAAC-AAAAAAGAAACCCACCAGTACCAATAACATTTCCTGTACTAGTTTCAAGCAGACA-CCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     142121 74 -    486031 aGAGAAAACATAAAAC-AAAAAAGAAACCCACCAGTACCAATAACATCTCCTGTACTAGTTTCAAGCAGACA-CCA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           383666 70 +  18854210 TGAGAAAAGACAA----ATAAAAAAAACCCACTAGTAGC-CCAACATTTCCTGCACTGGTTTTAAGCAAACA-CCC
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               58133213 64 -  94987271 AGGGAAACCTGAATAC-AGACAAAA-----TCTGCTGACGCCAGCATTCTGGGTAGTGGTTTTAAGTGGA------
i mm10.chr17               I 2087 C 0
e micMur3.chr6               428372 741 + 123392446 I
e proCoq1.NW_012149775v1     389742 1460 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I

a score=308529.000000
s hg38.chr6_GL000254v2_alt  1539062 25 +   4827813 TTTTCTCTCCCTTCCCTTGACCTTA
s panTro5.chr6             30408893 25 + 175400573 TTTTCTCTCCCTTCCCTTGACCTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30643126 25 + 173848474 TTTTCTCTCCCTTCCCTTGACCTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     351169 25 +   2037526 TTTTCTCTCCCTTCCCTTGACCTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75014164 25 + 122973662 TTTTCTCTCCCTTCCCTTGACCTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30904369 25 + 172585720 TTTTCTCTCTCTTCCCTTAACCTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30193913 24 - 170955103 TTTTCTCTC-CTTCCCTTAACCTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     442809 25 +   1495729 TTTTCTCTCTCTTCCCTTAACCTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     546418 25 -    863181 TTTTCTCTCTCTTCCCTTAACCTTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29693137 23 -  71996105 TTT--TCTCTCTTCCCTTAACCTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     428658 25 -    735854 TTTTCTCTCTCTTCCCTTAACCTTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     335670 25 -   1829203 TTTTCTCTCTCTTCCCTTAACCTTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30524049 25 + 171630274 TTTTCTCTCCCTTCCATTGACCTTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           327465 25 +    515838 TTTTCTCTCCCTTCCATTGACCTTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     957954 25 -   1771730 TTTTCTCTCCCTTCCATTGACCTTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     142195 25 -    486031 TTTTCTCTCCCTTCCATTGACCTTA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     391202 25 -   1411461 TTTTCCCTCCCTTCCCTTGACCTTA
i proCoq1.NW_012149775v1   I 1460 I 1829
s otoGar3.GL873550           383738 25 +  18854210 TTTTCTCTCCTTTCCCTCTACCTCA
i otoGar3.GL873550         I 2 I 4
s mm10.chr17               58133277 22 -  94987271 ---TCTCTCTCCTCAGCACTCCTCA
i mm10.chr17               C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e canFam3.chr35            26391461 402 +  26524999 I

a score=2114277.000000
s hg38.chr6_GL000254v2_alt  1539087 218 +   4827813 TCCCACCCCAGGGAGAGCTGCAATCTGA-------GTGCTCTGAGTCATTGAGGGCCAGGCTTCTGCTCTGAGGGCCACTTctctgggtgcattaggaaaaggcacccctccgggcaaacacaATGGATTTCAG-CCCCACCACATCCTCAGCTGTGTGCCTCTGTTC--CACACAGTAGGCATTCACACATGGCAGGGGCG-----TGAGGAGA-----------------------GGAAGGAGAAGAGAAAC--G
s panTro5.chr6             30408918 218 + 175400573 TCCCACCCCAGGGAGAGCTGCAATCTGA-------GTGCTCTGAGTCATTGAGGGCCAGGCTTCTGCTCTGAGGGCCACTTCTCTGGGTGCATTAGGAAAAGGCACCCCTCTGGGCAAACACAATGGATTTCAG-CCCCACCACATCCTCAGCTGTGTGCCTCTGTTC--CACACAGTAGGCATTCACACATGGCAGGGGCA-----TGGGGAGA-----------------------GGAAGGAGAAGAGAAAC--G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30643151 218 + 173848474 TCCCACCCCAGGGAGAGCTGCAATCTGA-------GTGCTCTGAGTCATTGAGGGCCAGGCTTCTGCTCTGAGGGCCACTTCTCTGGGTGCATTAGGAAAAGGCACCCCTCTGGGCAAACACAATGGATTTCAG-CCCCACCACATCCTCAGCTGTGTGCCTCTGTTC--CACACAGTAGGCATTCACACATGGCAGGGGCA-----TGGGGAGA-----------------------GGAAGGAGAAGAGAAAC--G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     351194 218 +   2037526 TCCCACCCCAGGGAGAGCTGCAATCTGA-------GTGCTCTGAGTCACTGAGGGCCAGGCTTCTGCTCTGAGGGCCACTTCTCTGGGTGCATTAGGAAAAGGCACCCCTCTGGGCAAACACAATGGATTTCAG-CCCCACCACATCCTCAGCTGTGTGCCTCTGTTC--CACACAGTAGGCATTCACACATGGCAGGGGCG-----TGGGGAGA-----------------------GGAAGGAGAAGAGAAAC--G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75014189 222 + 122973662 TCCTACCCCGGGGAGAGCTACAATCTGA-------GTGCTCTGAGTCATTGAGGGCCAGGCCTCTGCTCTGAGGGCCACTTCTGTGGGTGCATTAGGAAAAGGCACCCCTCTGGGCAAACACAATGGATTTCAG-CCCCACTACATCCTCAGCTGTGTGCCTCTGTTCCACACACAGTAGGGATCCACACATGGCAGGGGCG-----TGGGGAGA-----------------------GGAAGGAGAAGAGAAACAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30904394 213 + 172585720 CCCCACCCCAGTGAGAGCTGCAATCGGA-------GTGCTCTGAGTCACTGagggccaggcctctgctcagagggccacttctctgggtgcattaggaaaaggcacccctctgggcagacgcaATGGATTTCAG-CCCCACCACATCCTCAGCTGTGTGCCTCTGTTCCACACGCAATAGGCATCCACACATAGCAGGGGTG-----TGGGGAGA-----------------------GGAAGAACAG---------G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30193937 213 - 170955103 CCCCACCCCAGCGAGAGCTGCAATCGGA-------GTGCTCTGAGTCACTGAGGGCCAGGCCTCTGCTCAGAGGGCCACTTCTCTGGGTGCATTAGGAAAAGGCACCCCTCTGGGCAGACGCAATGGATTTCAG-CCCCACCACATCCTCAGCTGTGTGCCTCTGTTCCACACACAGTAGGCATCCACACATAGCAGGGTTG-----TGGGGAGA-----------------------GGAAGAACAG---------G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     442834 213 +   1495729 CCCCACCCCAGTGAGAGCTGCAATCGGA-------GTGCTCTGAGTCACTGagggccaggcctctgctcagagggccacttctctgggtgcattaggaaaaggcacccctctgggcagacgcaATGGATTTCAG-CCCCACCACATCCTCAGCTGTGTGCCTCTGTTCCACACACAGTAGGCATCCACACATAGCAGGGGTG-----TGGGGAGA-----------------------GGAAAAACAG---------G
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     546443 213 -    863181 CCCCACCCCAGCGAGAGCTGCAATCGGA-------GTGCTCTGAGTCACTGAGGGCCAGGCCTCTGCTCAGAGGGCCACTTCTCTGGGTGCATTAGGAAAAGGCACCGCTCTGGGCAGACGCAATGGATTTCAG-CCCCCCCACATCCTCAGCTGCGTGCCTCTGTTCCACACGCAATAGGCATCCACACATAGCAGGGGTG-----TGGGGAGA-----------------------GGAAGAACAG---------C
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29693160 213 -  71996105 CCCCACCCCAGCGAGAGCTGCAATCGGA-------GTGCTCTGAGTCACTGagggccaggcctctgcccagagggccacttctctgggtgcattaggaaaaggcacccctctgggcagacgcaATGGATTTCAG-CCCCACCACATCCTCAGCTGTGTGCCTCTGTTCCACACACAGTAGGCATCCACACATAGCAGGGTTG-----TGGGGAGA-----------------------GGAAGAACAG---------G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     428683 213 -    735854 CCCCACCCCAGCGAGAGCTGCAATCGGA-------GTGCTCTGAGTCACTGagggccaggcctctgctcagagggccacttctctgggtgcattaggaaaaggcacccctctgggcagatgcaATGGATTTCAG-CCCCACCACATCCTCAGCTGTGTGCCTCTGTTACACACACAGTAGGCATCCACACATAGCAGGGGTG-----TGGGGAGA-----------------------GGAAGAACAG---------G
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     335695 212 -   1829203 CCCCACCCCAGGGAGAGCTGCAATCGGA-------GTGCTCTGAGTCACTGAGGGCCAGGCCTCTGCTCAGAGGGCCACTTCTCT-GGTGCATTAGGAACAGGCACCTCTCTGGGCAGACACAATGGATTTCAG-CCCCACCATATCCTCAGCTGTGTGCCTCTGTTCCACACACAACAGGCATCCACACATAGCAGGGCTG-----TGGGGAGA-----------------------GGAAGAACAG---------G
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30524074 217 + 171630274 CTCCACCCCAGGGAGAGTTGCAGTCTGA-------GTGCTCTGAGTCACTGAGAGCCAGGGCTCTGCTCTGAGGGCCATTTCTCTTAGTGCATTAGGAAAAGGCACCCCTCTGGGCAGACACAATGGATTTCAG-CCCCACCACATCCTCAGCTGTGTGCCTCTGTTCCAC-----GTAGGCATCCATACATGGCAGGGGCA-----TGGGAAGA-----------------------GGAAGGAGAAGAGGAACAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           327490 226 +    515838 CTCCACCCCAGGGATAGCTATCGTCTGAGTGCTCTGTGCTCTGAGTCACTGAGAGCCGGGGCTCTGCTCTGAGGGCCACTTCTTTTAGTGCATTAGGAAAAGGCACCCCTCTgggcagacacaatggatttcag-ccccaccacatcctcagctgtgtgcctctgttccacgcacagcaggcatccatacatggcagGGGCA-----TGGGAA--------------------------GAAGAAGAAGAGGAACAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     957979 219 -   1771730 CTCCACCCCAGGGAGAGCTGCAGTCTGA-------GTGCTCTGAGTCACTGAGAGCCGGGGCTCTGCTCTGAGGGCCACTTCTCTTAATGCATTAGGAAAGGGCACCCCTCTGGGCAGACACAATGGATTTCAG-CCCCACCACATCCTCAGCTGTGTGCCTCTGTTCCACGCACAGCAGGCATCCATACATGGCAGGGGCA-----TGGGAA--------------------------GAGGAAGAAGAGGAACAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     142220 222 -    486031 CTCCACCACAGGGAGAGCTGCAGTCTGA-------GTGCTCTGAGTCACTGagagccagcgctctgctctgagggccacttctcttagtgaattaggaaaaggcacccctctgggcagacacaATGGATTTCAT-CCTCGCCACATCCTCAGCTGTGTGCCTCTGTTCCATGAACAGCAGGCATCCATACATggcaggggca-----tgggaaga-----------------------ggaaggagaagaggaacagg
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           383767 229 +  18854210 AGCTCTCCCAAGGACAGCTTCAATTTGA-------GTG--CTGAGTCACTGAAGGCAGAACCTTTGCTTTGAGGGCAAGTTCTCTGGGTGGATTATGAAAAGGTGCCCCTCAAAGCAGACACAACTGGTTTAAGCCCCCACCTTAGCCTCTGCACTGCACAACTGCAC--------------ATCCACACAAGGTGCTAGCC-----TGGGGAGAAGAAGGGTGTGCATCCTTGAAAGGGAAGGAGAGGAGGGAAA-A
i otoGar3.GL873550         I 4 C 0
s mm10.chr17               58133299 202 -  94987271 --------TCATGGCAGCTTCCGAGGCA-------GAGCTCTCAGGCACAGACAG--GGGCCTCTG-TATAGTAGCTAC-TCCCAGGGTTGATCAGG---------------GGACAGACACACTGCTGACAAA-CCCTAGCAC--TCTCAG----------CTGCTCCACTCACAACTCACATGCACATGTGGAAGGGCTGGCTGCTGGGAAAGTCTGATGCGCCCCT---------TGAAGGGGAAGAAAGAAACG
i mm10.chr17               C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e proCoq1.NW_012149775v1     391227 1829 -   1411461 I
e canFam3.chr35            26391461 402 +  26524999 I

a score=2052218.000000
s hg38.chr6_GL000254v2_alt  1539305 186 +   4827813 GGCAAAAGGA-------GATGCAGAAAATGACCCAGTCAAAGAGTATGACGAGAGAAATCTGAGAGAACAGAATGACATCTGGAGGAAAAGAGGGGGCCA--GAGAGACATTctggacaaa-----ataagaacaagagc---tcagagcccaggagtcaggacatctgggctcaagctgtgacctgac-----acccaccccatggc
s panTro5.chr6             30409136 186 + 175400573 GGCAAAAGGA-------GATGCAGAAAATGACCCAGTCAAAGAGTATGACGAGAGAAATCTGAGAGAACAGAATGACATCTGGAGGAAAAGAGGGGGCCA--GAGAGACATTctggacaaa-----ataagaacaagagc---tcagagcccaggagtcaggacatctgggctcaagctgtgacctgac-----acccaccccatggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30643369 186 + 173848474 GGCAAAAGGA-------GATGCAGAAAATGACCCAGTCAAAGAGTATGACGAGAGAAATCTGAGAGAACAGAATGACATCTGGAGGAAAAGAGGGGGCCA--GAGAGACATTctggacaaa-----ataagaacaagagc---tcagagcccaggagtcaggacatctgggctcaagctgtgacctgac-----acccaccccatggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     351412 186 +   2037526 GGCAAAAGGA-------GATGCAGAAAATGACCCAGTCAAAGAGTATGACGAGAGAAATCTGAGAGAACAGAATGACATCTGGAGGAAAAGAGGGGGCCA--GAGAGACATTctggacaaa-----ataagaacaagagc---tcagagcccaggagtcaggacatctgggctcaagctgtgacctgac-----acccaccccatggc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75014411 186 + 122973662 GACAAAAGGA-------GATACAGAAAATGACCCAGTCAAAGAGTATGACGAGAGAAATCTGGGGGAACAGAATGACATCTGGAGGAAAAGAGGGGGCCA--GAGAGACATTctggacaaa-----atgagaacaagagc---tcagagcccaggagtcaagacatctgggctcgagctgtgacctgac-----acctgccccatggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30904607 184 + 172585720 GGCAAAAGGA-------GATGCAGAAAATGACCCAGTC--AGAGTATGACAAGAGAAATCTGAGGGGACAGAATGACATCTGGAGGAAAAGGGGGGGCCA--GAGAGACATTctggacaaa-----ataagaacaagagc---tcagagcccaggagtcaggacatctgggctcgagctgtgacctgcc-----acctgccacatggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30194150 184 - 170955103 GGCAAAAGGA-------GACACAGAAAATGACCCAGTC--AGAGTATGACGAGAGAAATCTGAGGGGACAGAATGACATCTGGAGGAAAAGAGGCGGCCA--GAGAGACATTCTGGACAAA-----ATAAGAACAagagc---tcagagcccaggggtcaggacatctgggctcgagctgtgacctgcc-----acctgccacatggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     443047 184 +   1495729 GGCAAAAGGA-------GACGCAGAAAATGACCCGGTC--AGAGTATGACGAGAGAAATCTGAGGGGACAGAATGTCATCTGGAGGAAAAGAGGGGGCCA--GAGAGACATTctggacaaa-----ataagaacaagagc---tcagagcccaggagtcaggtcatctgggctcgagctgtgacctgcc-----acctgccacatggc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     546656 184 -    863181 GGCAAAAGGA-------GATGCAGAAAATGACCCAGTC--AGAGTATGACGAGAGAAATCTGAGGGGACAGAATGACATCTGGAGGAAAAGAGGGGGCCA--GAGAGACATTctggacaaa-----ataagaacaagagc---tcagagcccaggggtcaggacagctgggctcgagctgtgacctgcc-----acctgccacatggc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29693373 184 -  71996105 GGCAAAAGGA-------GACGCAGAAAATGACCCAGTC--AGAGTGTGACGAGAGAAATCTGAGGGGACAGAATGACATCTGGAGGAAAAGAGGAGGCCA--GAGAGACATTCTGGACAAA-----ATAAGAACAagagc---tcagagcccaggggtcaggacatctgggctcgagctgtgacctgcc-----acctgccacatggc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     428896 184 -    735854 GGCAAAAGGA-------GATGCAGAAAATGACCCAGTC--AGAGTATGACGAGAGAAATCTGAGGGGACAGAATGACATCTGGAGGAAAAGAGGGGGCCA--GAGAGACATTctggacaaa-----ataagaacaagagc---tcagagcccaggggtcaggagagctgggctcgagctgtgacctgcc-----acctgccacatggc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     335907 184 -   1829203 GGCAAAAGGA-------GACGCAGAAAATGACCCAGTC--AGAGTATGACGAGAGAAATGTGAGGGAACAGAATGACATCTGGAGGAAAAGAGGGGGCCA--GAGAGACATTctggacaaa-----ataagaacaagagc---tcagagcccaggggtcaggacatctgggctcgagctgtgacctgcc-----acctgccacagagc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30524291 184 + 171630274 GGCAAAAGGA-------GATGCAGAAAGTGACCCAGTC--AGAGTCTGACAAGAGAAATGTGAGGGAACAGAACCATATCTGGAGGAAAAGACGGGGCCA--GAGAGACATTTCAgacaaa-----atgagaacaagagc---acagagcccagaagtcaggacacctgggctcgagctataacctgac-----acctgcctcatggc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           327716 182 +    515838 GGCAAAAGGA-------GATGCAGAAAGTGACCCAGTCAAAGAGTCTGACAAGAGAAATCTGAGGGAACAGAATGAAATCTGGAGGAAAAGAGGGGGCca--gagagacattctggacaaa-----atgagaac---agc---acagagcccgggagtcaggacacc-aggctgaagccatgacctgac-----acctgcctcgtggc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     958198 186 -   1771730 GGCAAAAGGA-------GATGCAGAAAGTGACCCAGTCAAAGAGTCTGACAAGAGAAATCTGAGGGAACAGAACGAAATCTGGAGGAAAAGAGGGGGCCA--GAGAGACATTctggacaaa-----atgagaacaagagc---acagagcccaggagtcaggacacctgggctcgagccatgacctgac-----acctgcctcgtggc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     142442 186 -    486031 ggcaAAAGGA-------GATGCAGAAAGTGACCCAGTCAAAGAGTCTGACAAGAGAAATCTGAGGGAACAGAACGACATCTGGAGGAAAAGAGGGGGCCA--GAGAGACATTctggacaaa-----atgagaacaagagc---acagagcccgggagtcaggacacctgggctcgagccatgacctgac-----acctgcctcgtggc
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           383996 191 +  18854210 AGCCAAAAGA-------GAGGCAGCAAGTAGCCCAGTTAAAGAGTCTGATGAGAGAAATGTGAGGGAGCAGGAGAACATCCGGAGGAAA---GTAGACCA--GACAGATATTctggacaaa-----atgaaagaaaagacaaacaagaatctgggagttaggacaagtgttctcaagcttatgcctgattcctgacctatcccatatc
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58133501 168 -  94987271 GGGTGAGGGA-------GAGGAGACAAGTGACCC------AGAGGCTGATAAAAAAAAAATCTAGAGAAGAGGCAATGCCTGGAGCTAAGGAGGGAGCCCCTGAGGGACATT--GGACAAG-----AGAGAAA----AGT---CCAAAGCCTGGGGGGTTAGATACC--------AGCTTTGAGTTCTA-----ATCTGCCCCAGGGT
i mm10.chr17               C 0 I 15
s canFam3.chr35            26391863 151 +  26524999 GGCAAAAGGAGGGCGCGGAGGCAGTAAGTGAATGAGTC--ACAGTCTGATGCAAGGAA-CTGAGGGCACACAGTGGCATCTGGAGCAAACAGGGGAGCTA--GAGGTACATTTTGGGGAAACAAGGATAAGAACAGGAGC---CTATAGGCC-----TCACGGC--------------------------------------------
i canFam3.chr35            I 402 C 0
e micMur3.chr6               428372 741 + 123392446 I
e proCoq1.NW_012149775v1     391227 1829 -   1411461 I

a score=921097.000000
s hg38.chr6_GL000254v2_alt  1539491 84 +   4827813 ctgggacaaactcctcccactctctggacctcagtgacttcatcagtaggggctgaactgg-aaggtctaaaatccctgccagtc
s panTro5.chr6             30409322 84 + 175400573 ctgggacaaactccttccactctctggacctcagtgacttcatcagtaggggatggactgg-aaggtctaaaatccctgccagtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30643555 84 + 173848474 ctgggacaaactccttccactctctggacctcagtgacttcatcagtaggggatggactgg-aaggtctaaaatccctgccagtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     351598 84 +   2037526 ctgggacaaactccttccactctctggacctcagtgacttcatcagtaggggctggactgg-aaggtctaaaatccctgccagtc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75014597 84 + 122973662 ctgggacaaactccttccactctctggacctcagtgacttcatcagtaggggctggactgg-aaggtctaaaatccctgccagtc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30904791 84 + 172585720 ctgggacaaacaacttccactctctggacctcagtgacttcatcagtaggggctggactgg-aaggtctaacctccctgccaggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30194334 84 - 170955103 ctgggacaaactccttccactctctggacctcagtgacttcatcagtaggggctggactgg-aaggtctaacctccctgccaggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     443231 84 +   1495729 ctgggacaaactccttccactctctggacctcagtgacttcatcagtaggggctggactgg-aaggtctaacctccctgccagtc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     546840 83 -    863181 ctgggacaaact-cttccactctctggacctcagtgacttcatcagtaggggctggactgg-aaggtctaacctccctgccagtc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29693557 84 -  71996105 ctgggacaaactccttccactctctggacctcagtgacttcatcagtaggggctggactgg-aaggtctaacctccctgccagtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     429080 84 -    735854 ctgggacaaactccttccactctccggacctcagtgacttcatcagtaggggctggactgg-aaggtctaacctccctgccagtc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     336091 84 -   1829203 ctgggacaaactccttccactctctggacctcagtgacttcatcagtaggggctggactgg-aaggtctaaactccctgccagtc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30524475 83 + 171630274 ctaggacaaactccttctactccctggacctcagtgacttcagcattagggattagactgg-atggtctaaaa-tcctgccagtc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           327898 84 +    515838 ctgggacaaattccttcccctccctggacctcagtgacttcagcagtagggactggaccgg-atggtctaaaactcttgccagtc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     958384 84 -   1771730 ctgggacaaactccttccactccctggacctcagtgacttcagcagtagggactggactgg-atggtctaaaatccctgccagtc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     142628 84 -    486031 ctgggacaaactccttccactccctggacctcagtgacttcagcagtagggactggactgg-atggtctaaaatccctgccagtc
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           384187 85 +  18854210 ctgggacaaatcccttccactctctggacatcagtgtcttcatcagtaagggatggattggaaaagcctaaaatccctgccagtc
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26392014 43 +  26524999 ------------------------CGGGCG-----------ATCAGCAATGTCTG-------AGGGCCCTCGAACCCTGCCCATC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e mm10.chr17               58133669 15 -  94987271 I
e proCoq1.NW_012149775v1     391227 1829 -   1411461 I

a score=5278543.000000
s hg38.chr6_GL000254v2_alt  1539575 534 +   4827813 ctcattctgtACATCTGAATTCACAACAATG-----AGGAGCAGGT---GGCCGCCTCCTTCTGCAGTCTGTCCCAGTGCACATACTGCAGAGTCTGCCTTGCTATCTC-TCCCT-CCTAGCTA-----TTGCCCTGCCATTAGCCTGGGACTCCACCTTCCTAGAGATCCTGGGTGGCTCTGCTGCTGACAGACAGACCCAGCC---ACCCTAAAC--AGTGCAAGTGGG----GGAATACCATCAGAGAGCCCCTCCCCTCCCAGCCTATGAGAGCAGGAAGGTTGAGCCCTCTACCCCTCCAAAGGGGACTGGGCCCTCTTCAGGGTAAGTGTGATCCCC-AGAGGCTC-CCGGG-GGGGAGGAGATGTGGTGCCATTTCAGCTTCACAGCCAGTTCTTCAGCCCCAAACCCTCCCTTTCTCACTATCAAAGCCCCCTCCTCTAGGAGGTGCCCCGAGGCCCCCTTGTCTGCTTTCCATCTTG----TTCTCTGTGTGGTAATCCCATGGG-----CCAAAGAAAACCTG--GCCATCTCTGTCTCCCTTC--------CCCAGTTACCCTATCTCT
s panTro5.chr6             30409406 537 + 175400573 ctcattctgtACATCTGAATTCACAACAATG-----AGGAGCAGGT---GGCCGCCTCCTTCTGCAGTCTGTCCCAGTGCACATACTGCAGAGTCTGCCTTGCTATCTC-TCCCT-CCTGGCTA-----TTGCCCTGCCATTAGCCTGGGACTCCACCTTCCTAGAGATCCTGGGTGGCTCTGCTGCTGACAGACAGACCCAGCC---ACCCTAAAC--AGTGCAAGTGGGTGGGGGAATACCATCAGAGAGCCCCTCCCCTCCCAGCCTATGAGAGCAGGAAGGTTGAGCCCTCTACCCCTCCAAAGGGGGCTGGGCCCTCTTCAGGGTAAGTGTGATCCCC-AGAGGCTC-CCGGG-GGG-AGGAGATGTGGTGCCATTTCAGCTTCACAGCCAGTTCTTCAGCCCCAAACCCTCCCTTTCTCACTATCAAAGCCCCCTCCTCTAGGAGGTGCCCCAAGGCCCCCTTGTCTGCTTTCCATCTTG----TTCTCTGTGTGGTAATCCCATGGG-----CCAAAGAAAACCTG--GCCATCTCTGTCTCCCTTC--------CCCAGTAACCCTATCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30643639 537 + 173848474 ctcattctgtACATCTGAATTCACAACAATG-----AGGAGCAGGT---GGCCGCCTCCTTCTGCAGTCTGTCCCAGTGCACATACTGCAGAGTCTGCCTTGCTATCTC-TCCCT-CCTGGCTA-----TTGCCCTGCCATTAGCCTGGGACTCCACCTTCCTAGAGATCCTGGGTGGCTCTGCTGCTGACAGACAGACCCAGCC---ACCCTAAAC--AGTGCAAGTGGGTGGGGGAATACCATCAGAGAGCCCCTCCCCTCCCAGCCTATGAGAGCAGGAAGGTTGAGCCCTCTACCCCTCCAAAGGGGGCTGGGCCCTCTTCAGGGTAAGTGTGATCCCC-AGAGGCTC-CCGGG-GGG-AGGAGATGTGATGCCATTTCAGCTTCACAGCCAGTTCTTCAGCCCCAAACCCTCCCTTTCTCACTATCAAAGCCCCCTCCTCTAGGAGGTGCCCCAAGGCCCCCTTGTCTGCTTTCCATCTTG----TTCTCTGTGTGGTAATCCCATGGG-----CCAAAGAAAACCTG--GCCATCTCTGTCTCCCTTC--------CCCAGTAACCCTATCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     351682 533 +   2037526 ctcattctgtACATCTGAATTCACAACAATG-----AGGAGCAGGT---GGCCGCCTCCTTCTGCAGTCTGTCCCAGTGTACATACTGCAGAGTCTGCCTTGCTATCTC-TCCCT-CCTGGCTA-----TTGCCCTGCCATTAGCCTGGGACTCCACCTTCCTAGAGATCCTGGGTGGCTCTGCTGCTGACAGACAGACCCAGCC---ACCCTAAAC--AGTGCAAGTGGG----GGAATACCATCAGAGAGCCCCTCCCCTCCCAGCCTATGAGAGCAGGAAGGTTGAGCCCTCTACCCCTCCAAAGGGGGCTGGGTCCTCTTCAGGGTAAGTGTGATCCCC-AGAGGCTC-CCGGT-GGG-AGGAGATGTGGTGCCATTTCAGCTTCACAGCCAGTTCTTCAGCCCCAAACCCTCCCTTTCTCACTATCAAAGCCCCCTCCTCTAGGAGGTGCCCCGAGGCCCCCTTGTCTGCTTTCCATCTTG----TTCTCTGTGTGGTAATCCCATGGG-----CCAAAGAAAACCTG--GCCATCTCTGTCTCCCTTC--------CCCAGTTACCCTATCTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75014681 532 + 122973662 ctcattctgtgcatctgaattcACAACAATG-----AGAAGCAGGT---GGCCGCCTCCTTCTGCAGTCTGTCCTGGTGCACATACTGCGGAGTCTGCCTTGCTCTCTC-TCCCT-CCTGGCTATTGGTTTGCCCTGCCATTGGCCTGGGACTCCACCTTCCTAGAGATCCT-GGTGGCTCTGCTGTTGACAGACAGACCCAGCC---ACCCTAAAC--AGTGCAAGTGGG----GGAATACCATCAGAGAGCCCCTCTCCTCCCAGCCTATGAGAGCAGGAAGGTTGAGCCCTCTACCCCTCCAAAGGCTGCTGGGCCCTCTTCAGGGT-AGTGTGATCCCC-AGAGGCTC-CTGG------GGCAGATGTGGTGCCATTTCAGC-TCACAGTGAGTTCTTCAGCCCCAAAGCCTCCCTTTCGCACTATCAAAGCCCCCTCCTCTAGGAGGTGCCCCAACGCCCCCTTGTCTGCTTTCCATCTTG----TTCTCTGTGTAGTGATCCCATGGG----CCCAGAGAAAACCTG--GCTATCTCTGTCTCTCTTC--------CCCAGTCACCCTATCTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30904875 531 + 172585720 ctcattctgtgcatctgaattcACAACAATG-----AGGAGCAGGT---GGCCACTTCCTTCTGCAGTCTGTCCTGGTGCACACACTGGGGAGTCTGCCTTGCCGCCTC-TCCCT-CCTGGCTATTGGTTTGCCCTGCCATCGGCCTGGGA--CCACCTTCCTAGAAATCCTGGGTGGCTCTGCTACT----GACAGACCCAGCC---ACCCTAAAC--AGTGCAAGTGGG----GGAATACCATCAGAGAGCCCCTCTCCTCCCAGCCTGTGAGGACAGGAAGGTTGAGCCCTCTACCCCTCCAAAGGCTGCTGGACCCTCTTCAGGGT-AGTGTGATCCCC-AGAGGCTC-CCGGG-GG--AGGAGATGTGGTGCCATTTCAGCTTCACAGCCAGTTCTTCAGCCCCAAAGCCTCCCTTTCTCACTATCAAAGCCCCCTCCTCTAGGAGGCGCCCCAAGGCCCCCTTGTCTGCTTTCCATCTTG----TTCTCTGTGTGGTAATCCCATGGG----CCCAGAGAAAACCTG--GCCATCTCTGTCTCCCTTC--------CCCAGTTTCCCTATCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30194418 531 - 170955103 ctcattctgtgCATCTGAATTCACAACAATG-----AGGAGCAGGT---GGCCGCTTCCTTCTGCAGTCTGTCCTGGTGCACACACTGGGGAGTCTGCCTTGCCGCCTC-TCCCT-CCTGGCTATTGGTTTGCCCTGCCATCGGCCTGGGA--CCACCTTCCTAGAAATCCTGGGTGGCTCTGCTGCT----GACAGACCCAGCC---ACCCTGAAC--AGTGCAAGTGGG----GGAATACCATCAGAGAGCCCCTCTCCTCCCAGCCTGTGAGGACAGGAAGGTTGAGCCCTCTACCCCTCCAAAGGCTGCTGGACCCTCTTCAGGGT-AGTGTGATCCCC-AGAGGCTC-CCGGG-GG--AGGAGATGTGGTGCCATTTCAGCTTCACAGCCAGTTCTTCAGCCCCAAAGCCTCCCTTTCTCACTATCAAAGCCCCCTCCTCTAGGAGGCGCCCCGAGGCCCCCTTGCCTGCTTTCCATCTTG----TTCTCTGTGTGGTAATCCCATGGG----CCCAGAGAAAACCTG--GCCATCTCTGTTTCCCTTC--------CCCAGTTTCCCTATCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     443315 535 +   1495729 ctcattctgtgcatctgaattcACAACAATG-----AGGAGCAGGT---GGCCGCTTCCTTCTGCAGTCTGTCCTGGTGCACACACTGGGGAGTCTGCCTTGCCGCCTC-TCCCT-CCTGGCTATTGGTTTGCCCTGCCATTGGCCTGGGA--CCACCTTCCTAGAAATCCTGGGTGGCTCTGCTGCTGACAGACAGACCCAGCC---ACCCTAAAC--AGTGCAAGTGGG----TGAATACCATCAGAGAGCCCCTCTCCTCCCAGCCTGTGAGGACAGGAAGGTTGAGCCCTCTACCCCTCCAAAGGCTGCTGGGCCCTCTTCAGGGT-AGTGTGATCCCC-AGAGGCTC-CCGGG-GG--AGGAGATGTGGTGCCATTTCAGCTTCACAGCCAGTTCTTCAGCCCCAAAGCCTCCCTTTCTCACTATCAAAGGCCCCTCCTCTAGGAGGCGCCCCGAGGCCCCCTTGCCTGCTTTCCATCTTG----TTCTCTGTGTGGTAATCCCATGGG----CCCAGAGAAAACCTG--GCCATCTCTGTTTCCCTTC--------CCCAGTTTCCCTATCTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     546923 535 -    863181 ctcattctgtgcatctgaattcACAACAATG-----AGGAGCAGGT---GGCCGCTTCCTTCTGCACTCTGTCCTGGTGCACGCACTGGGGAGTCTGCCTTGCCGTCTC-TCCCT-CCTGGCTATTGGTTTGCCCTGCCATTGGCCTGGGA--CCACCTTCCTAGAAATCCTGGGTGGCTCTGCTGCTGACAGACAGACCCAGCC---ACCCTAAAC--AGTGCAAGTGGG----GGAATACCATCAGAGAGCCCCTCTCCTCCCAGCCTGTGAGGATAGGAAGGTTGAGCCCTCTACCCCTCCAAAGGCTGCTGGGCCCTCCTCACGGT-AGTGTGATCCCC-AGAGGCTC-CCGGG-GG--AGGAGATGTGGTGCCATTTCAGCTTCACAGCCAGTTCTTCAGCCCCAAAGCCTCCCTTTCTCACTATCAAAGGCCCCTCCTCTAGGAGGCGCCCCGAGGCCCCCTTGCCTGCTTTCCATCTTG----TTCTCTGTGTGGTAATCCCATGGG----CCCAGAGAAAACCTG--GCCATCTCTGTTTCCCTTC--------CCCAGTTTCCCTATCTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29693641 535 -  71996105 ctcattctgtgcatctgaattcACAACAATG-----AGGAGCAGGT---GGCCACTTCCTTCTGCAGTCTGTCCTGGTGCACACACTGGGGAGTCTGCCTTGCCATCTC-TCCCT-CCTGGCTATTGGTTTGCCCTGCCATTGGCCTGGGA--CCACCTTCCTAGAAATCCTGGGTGGCTCTGCTGCTGACAGACAGACCCAGCC---ACCCTAAAC--AGTGCAAGTGGG----GGAATACCATCAGAGAGCCCCTCTCCTCCCAGCCTGTGAGGACAGGAAGGTTGAGCCCTCTACCCCTCCAAAGGCTGCTGGGCCCTCTTCAGGGT-AGTGTGATCCCC-AGAGGCTC-CCGGG-GG--AGGAGATGTGGTGCCATTTCAGCTTCACAGCCAGTTCTTCAGCCCCAAAGCCTCCCTTTCTCACTATCAAAGCCCCCTCCTCTAGGAGGCGCCCCGAGGCCCCCTTGCCTGCTTTCCATCTTG----TTCTCTGTGTGGTAATCCCATGGG----CCCAGAGAAAACCTG--GCCATCTCTGTTTCCCTTC--------CCCAGTTTCCCTATCTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     429164 535 -    735854 ctcattctgtgcatctgaattcACAACAATG-----AGGAGCAGGT---GGCCGCTTCCTTCTGCAGTCTGTCCTGGTGCACACACTGGGGAGTCTGCCTTGCCATCTA-TCCCG-CCTGGCTATTGGTTTGCCCTGCCATTGGCCTGGGA--CCACCTTCCTAGAAATCCTGGGTGGCTCTGCTGCTGACAGACAGACCCAGCC---ACCCTAAAC--AGTGCAAGTGGG----GGAATACCATCAGAGAGCCCCTCTCCTTCCAGCCTGTGAGGATAGGAAGGTTGAGCCCTCTATCCCTCCAAAGGCTGCTGGACCCTCTTCAGGGT-AGTGTGATCCCC-AGAGGCTC-CCGGG-GG--AGGAGATGTGGTGCCATTTCAGCTTCACAGCCAGTTCTTCAGCCCCAAAGCCTCCCTTTCTCACTATCAAAGGCCCCTCCTCTAGGAGGCGCCCCGAGGTCCCCTTGTCTGCTTTCCATCTTG----TTCTCTGTGTGGTAATCTTATGGG----CCCAGAGAAAACCTG--GCCATCTCTGTTTCCCTTC--------CCCAGTTTCCCTATCTCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     336175 536 -   1829203 ctcattctgtgCATCCGAATTCACAACAATG-----AGGAGCAGGT---GGCCGCTTCCTTCTGCACTCTGTCCTGGTGCACACACTGGGGAGTCTGCCTTGCCGTCTC-TCCCT-CCTGGCTATTGGTTTGCCCTGCCATTGGCCTGGGACCCCACCTTCCTAGAAATCCTGGGTGGCTCTGCTGCTGACAGACAGACCCAGCC---ACCCTAAAC--AGTGCACGTGGG----GAAATACCATCAGAGAGCCCCTCTCCTCCCAGCCTGTGAGGGCAGGAAGGTCGAGCCCTCTGCCCCTCCAAAGGCTGCTGGACCCTCTTCAGGGT-AGTGTGATCCCC-AGAGGCTC-CCGGG-GG--AGGAGATGTGGTGCCATTTCAGCTTCACAGCCAGTTTTTCAGCTCCAAAGCCTCCCTTTCTCACTACCAAAG-CCCCTCCTCTAGGAGGCGCCCCGAGCCCCCCTTGTCTGCTTTCCATCTTG----TTCTCTGTGTGGTAATCCCATGGG----CCCAGAGAAAACCTG--GCCATCTCTGTCTCCCTTC--------CCCAGTTTCCCTATCTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30524558 503 + 171630274 ctcattctG--CATCTGAATTCACAACAGTG-----GGAAGCCTGT---GGCCACCTT---CTGTAGTCTGTCCTGGTGCACACACTTGGGAGTCTGCCTTGCTATCTC-TCCCT-CCTGGCTATTGGTTTGCCCTGCCATTGGCCTGGGACCCCACCTTCCTAGAGATCCTGGGTGACTCTGCTGCTGA--------------------CCTAAAC--AGTGCAACTGGG----GGAATACCATCAGAGAGCCCCTCTTCTCCCAGCCTGTGAGGGAAGGAAGGTCAAGCCCTCTACACCTCCAAAGGCTGCT-GGCCCTGTTCAGGGC-AGTGTAATCCC---GAGGCTC-CTGGG-GG--AGGAGATGTGGTGCTGTTTCAGCTTCACAACCAG----TCAGCCCCAAAGCCTCCCTTT----CTATCAAAGCCCCCTCCTCTAGGAGGCGCCCCAAGG-CCCCTTGCCTGCTTTCCATCTTG----TTCTCTGTGTCGTAATCCCATAGG----CCCAGAGAAAACCTG--GTCATCTCTGTCTCCCTTC--------CTCAGTTACCCTATCTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           327982 506 +    515838 ctcattctG--CATC--AATTCACAACAGTG-----GGAAGCCGGT---GGCCACCTC---CTGCAGTCTGTCCTGGTGCACACACTTGGGAGTCTGCCTTGCTATCTC-TCCCT-CCTGGCTATTGGTTTGCCCTGCCATTGGCCTGGGACCCCACCTTCCTAGAGATCCTGGGTGACTCTGCTGCTGA--------------------CCTAAAC--AGTGCAACTGGG----GGAATACCATCAGAGAGCCCCTCTTCTCCCAGCCTGTGATGGAAGGAAGGTCAAGCCCTCTACACCTCCAAAGGCTGCTGGGCCCTGTTCAGGGC-AGTGTAATTCT---CAGGCTC-CTGGG-GG--AGGAGATGTGGTGCCATTTCAGCTTCACAACCAGTTCTTCAGCCCCAAAGCCTCCCTTT----CTATCAAAGCCCCCTCCTCTAGGAGGTGCCCTAAGG-CCCCTTGTCTGCTTTGCATCTTG----TTCTCTGTGTGGTAATCCCATAGG----CCCAGAGAAAACCTG--GCCATCTCTGTCTCCCTTC--------CCCAGTTACCCTATCTCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     958468 510 -   1771730 ctcattctG--CATCTGAATTCACAACAATG-----GTAAGCCCGT---GGCCACTTC---CTATAGTCTGTCCTGGTACACACACTTGGGTGTCTGCCTTGCTATCTC-TCCCT-CCTGGCTATTGGTTTGCCCTGCCATTGGCCTGGGACCCCACCTTCCTAGAGATCCTGGGTGACTCTGCTGCTGA-------------------CCCTAAAC--AGTGCAAGTGGG----GGAATACCATCAGAGAGCCCCTCTTCTCCCAGCCTGTGAGGGAAGGAAGGTCAAGTCCTCTATACCTCCAAAGGCTGCTGGGCCCTGTTCAGGGC-AGTGTAAGCCCG-AGAGGCTC-CC-GG-GG--AGGAGATGTGGTGCCATTTCAGCTTCACAACCAGTTCTTCAGCCCGAAAGCCTTCCTTT----CTATCAAAGCCCCCTCCTCTAGGAGGCGCCCCAAGG-CCCCTTGTCTGCTTTCCATCTTG----TTCTCTGTGTGGTAATCCCATAGG----CCCAGAGAAAACCTG--GCCATCTCTGTCTCCCTTC--------CCCAGTTACCCTATCTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     142712 507 -    486031 ctcattctG--CATCTGAATTCACAACAATG-----GGAAGCTGGT---GGCCACCTC---CTGTAGTCTGTCCTGGTGCACACACTTGGGAGTGTGCCTTGCTATCTC-TCCCT-CCCGGCTATTGGTTTGCCCTGCCATTGGTCTGGGACCCCACCTTCCTAGAGATCCTGGGTGACTCTGCTGCTGA--------------------CCTAAAC--AGTGCAAGTGGG----GGAATACCATCAGAGAGCCTCTCTTCTCCCAGCCTGTGAGGGAAGGAGGGTCAAGCCCTCTACACCTCCAAACGCTGCTGGGCCCTATTCAGGGC-AGTGTAATCCCG-AGAGGCTC-CCAGG-GG--AGGAGATGTGGTGCCATTTCAGCTTCACAACCAGTTCTCCAGTCCCAAAGCCTCTCTTT----CTATCAAAGCCCCCTCCTCTAGGAGGCGCCCCAAGG-CCCCTTGTCTGCTTTCCATCTTG----TTCTCTGTGTGGTAATCCCATAGG-----CCAGAGAAAACTTG--GCCA--TCTGTCTCCCTTC--------CCCAGTTACCCTAGCTCT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           384272 511 +  18854210 ttcattcagtgcatctgta-aCACAATCGTA-----AGAGGCAGGCAGAGGCCACCCCCTTATGCAGTCTGTGCTGGCACACATACTGGAGA----AATTTGCCATCTC-TCCCCACTTCACTATCACTTTGCCCTGCT-CTGGCCTGCGACCCCACTTACCTACAGATTGTGGGTGTTTCTGCCCCTGA----CAGTCTCAGCC---ACCCCCAAC--AGTGCAAGTCGG----GGAAGACCATCAGATAGACCCTCCTCTCCTAGCCTGTGAAGGCAGGAAGAGCAAACCCTCCAACCCTCCAAAGCCTCCTGAATCCTGTTCAGGGC-AGTGTGGTCCTTGAGAGGCTC-CAGGG-GA--GGGAGATGGGGTGTTACCTCAGCTTCACTGTGTGTTCTCCAACCC-AAACCCCTCCTTTCTCAGCATCAAAG--CCCTTCTCCAGGAGGCATTCCAAGG-CATCTTGCCTGTTCTCAATATCA----CTCTCTGTG-GGCAATTCCACGCACCATCCCAGAGAAAACCTG--ACCATCCC---CTGACCTC--------C-----------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58133684 413 -  94987271 CTCACTCTG--------------CTGCAAAG-----AGA----------GGCCTCCTGATGATGCAGCCTGT------------GCTTGGGACTC-GCACAGACATCTCTTCTCT-CCTGGCTATCACTGTGCCCTGCCACTGGTCTGGAA--CC-----CCTAGAGACCTT-TGTGTGTCTTCTGATGGCAGAAAGGTTCATTTCTGACGTCAAACCAGGGGGGGGTCAG----AGGAAACCAGCATATGACCCTTCTCCT---GGTTTAT-ATGGAGGGAAGGTCCGGCCCTCCCCTTTTGGGTAGAATGCTA----------------AGGGTGA------AGAGGCTTGTCAGT-GG--AACGGA--------------------ACAGCCTGCT---------------CTCGCTTT------------GTGTCCT-------GAGGTACCCCCCGGTCACC------GTTCTCCAGGTTGATGATGCTCTATG--------------G----TCCAGAGGAAACCT-----CTCATCTATCTATCTTCACTTGCCTCCCATGCACCTTGGATCC
i mm10.chr17               I 15 I 12
s canFam3.chr35            26392057 352 +  26524999 -CCAACCCCTGAGCCAGAGTGCAGAGCAGGGGTCACAGGCCAAGGT---GATCCCTTC---CCATAG------------------CTGGACAGCCTGCCCT-CTGTGCA-TCCCT-GAGG--------------CTGCCA---GCCTGGGA----------CAGGGGTTTCCTGGTGG----------------------GGGCC-----------C----------TGGG----GG------------------CTGTACTGCTGGCCTGGGAGGG-AGGAAGGTCCAGCAC--------------------------------------AGC----CCTCC-AGAAGCTG-CAGGACGG--AGGAGACGAGTTGCCTTCT---------------------AGTTCAAGGCTCATCCCGTCTGAGCATCAAAGCTGTCTCCGCCAGGAAGGG----------------------TTCCATCTTT----CTCTCTGAG-AGTAACTGCACAGC-----CCTGAGAACACCCGCCCCCATGGCTGTGGCTGTCC--------CTCAGCAATCCCCCACCC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               428372 741 + 123392446 I
e proCoq1.NW_012149775v1     391227 1829 -   1411461 I

a score=930485.000000
s hg38.chr6_GL000254v2_alt  1540109  82 +   4827813 TCCAGATC--CTCTGGGTCTTTGAGAGGAGCTG--CTGGTCAGC--CCTCCCTCAGC----------------CACCCCCAACCACAACAC-------------------------------------------------CATAAAAAGCTTC
s panTro5.chr6             30409943  82 + 175400573 TCCAGATC--CTCTGGGTCTTTGAGAGGAGCTG--CTGGTCAGC--CCTCCCTCAGC----------------CACCCCCAACCACAACAC-------------------------------------------------CATAAAAAGCTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30644176  82 + 173848474 TCCAGATC--CTCTGGGTCTTTGAGAGGAGCTG--CTGGTCAGC--CCTCCCTCAGC----------------CACCCCCAACCACAACAC-------------------------------------------------CATAAAAAGCTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     352215  82 +   2037526 TCCAGATC--CTCTGGGTCTTTGAGAGGAGCTG--CTGGTCAGC--CCTCCCTCAGC----------------CACCCCCAACCACAACAC-------------------------------------------------CATAAAAAGCTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75015213  82 + 122973662 TCCAGATC--CTCGGGGTCTTTGAGAGGAGCTG--CTGGTCAGC--CCTCCCTCAGC----------------CACCCCCAACCATAACAC-------------------------------------------------CATAAAAAGCTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30905406  82 + 172585720 TCCAGATC--CTCCGGGCCTTTGAGAGGAGCTG--CTGGTCAGC--CCTCCCTCAGC----------------CACCCCCAACCACAACAC-------------------------------------------------CATAAAAAGTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30194949  81 - 170955103 TCCACATC--CTCTGGGCCTTTGAGAGGAGCTG--CTGGTCAGC--CCTCCCTCAGC----------------CA-CCCCAACCACAACAC-------------------------------------------------CATAAAAAGTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     443850  81 +   1495729 TCCACATC--CTCTGGGCCTTTGAGAGGAGCTG--CTGGTCAGC--CCTCCCTCAGC----------------CA-CCCCAATCACAACAC-------------------------------------------------CATAAAAAGTTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     547458  81 -    863181 TCCAGATC--CTCCGGGCCTTTGAGAGGAGCTG--CTGGTCAGT--CCTCCCTCAGC----------------CA-CCCCAACCACAACAC-------------------------------------------------CACAAAAAGTTTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29694176  81 -  71996105 TCCAGATC--CTCTGGGCCTTTGAGAGGAGCTG--CTGGTCAGC--CCTCCCTCAGC----------------CA-CCCCAACCACAACAC-------------------------------------------------CATAAAAAGTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     429699  81 -    735854 TCCAGATC--CTCCGGGCCTTTGAGAGGAGCTG--CTGGTCAGC--CCTCCCTCAGC----------------CA-CCCCAACCACAACAC-------------------------------------------------CAGAAAAAGTTTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     336711  82 -   1829203 TCCAGATC--CTCCGGGTCTTTGAGAGGAGCTG--CTGGTCAGC--CCTCCCTCAGC----------------CACCCCCAACCACACCAC-------------------------------------------------CATAAAAAGCTTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30525061  82 + 171630274 TCTAGACC--CTCTGGGTCTTTGAGAGGAGCCA--CTGGTCAGC--CCTCCCTCAGC----------------CACCCCCAACCATGACAC-------------------------------------------------CATAAAAAGCTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           328488  82 +    515838 TCTAGACC--CTCTGGGTCTTTGAGAGGAGCCG--CTGGTCAGC--CCTCCCTCAGC----------------CACCCCCAACCGTGACAC-------------------------------------------------CATAAAAAGCTTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     958978  82 -   1771730 TTTAGACC--CTCCGAGTCTTTGAGACGAGCCG--CTGGTCAGC--CCTCCCTCAGC----------------CACCCCCAACCACGACAC-------------------------------------------------CATAAAAAGCTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     143219  82 -    486031 TCTAGACC--CTCTGGGTCTTTGAGAGGAACCG--CTGGTCAGC--CCTCCCTCAGC----------------CATCCCCAATTACGACAC-------------------------------------------------CATAAAAAGCTTC
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               429113  81 + 123392446 TCCAGGCC--CTCGGGGTCTCTGAGGGGAGCCG---CAGTCAGC--CCTCCCTCAGC----------------CACCCCCAAGCACGACAC-------------------------------------------------CATAAAAAGCTTC
i micMur3.chr6             I 741 I 389
s otoGar3.GL873550           384783  82 +  18854210 TCCAGACC--CTCCAGGTCTTTGAGAGGAGCCA--CCAGTCCAC--TTTCTCTCAGC----------------CACCCCCAACTAAGACAC-------------------------------------------------CATAAAAAGCCTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58134109 153 -  94987271 CTCAGCCCATCTCTAGAACCATATAAGGCACCTATCAAATAAGCGGCCTGCCTTagtcgggcgtgggggtgcacacctagaaccccagcactcagaaggttgagacaggaatgcctttaatctgaggacagatgggatggcacagtaagcctg
i mm10.chr17               I 12 I 3
s canFam3.chr35            26392409  41 +  26524999 ----------------------------------------------CACAGCACAGC----------------TG-CCCCATCTCCAGAGT-------------------------------------------------CAGGAGGAGCAGC
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012149775v1     391227 1829 -   1411461 I

a score=962488.000000
s hg38.chr6_GL000254v2_alt  1540191  97 +   4827813 --CACCAGCTGC--TAAGTGTCTGCCAATGACTTGTTA---AGAGGGCTTGTGATGGCAG--TGATGAGGATGGAGGATGGTA-------------AATGATATTAATAATCTTCCCTT
s panTro5.chr6             30410025  97 + 175400573 --CACCAGCTGC--TAAGTGTCTGCCAATGACTTGTTA---AGAGGGCTTGTGATGGCAG--TGATGAGGATGGAGGATGGTA-------------AATGATATTAATAATCTTCCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30644258  97 + 173848474 --CACCAGCTGC--TAAGTGTCTGCCAATGACTTGTTA---AGAGGGCTTGTGATGGCAG--TGATGAGGATGGAGGATGGTA-------------AATGATATTAATAATCTTCCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     352297  97 +   2037526 --CACCAGCTGC--TAAGTGTCTGCCAATGACTTGTTA---AGAGGGCTTGTGATGGCAG--TGATGAGGATGGAGGATGGTA-------------AATGATATTAATAATCTTCCCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75015295  94 + 122973662 --CACCA---GC--TAAGTGTCTGCCAGTGACTTGTTA---GAAGGGCTCGTGATGGCAG--TGATGAGGATGGAGGATGGTA-------------AATGATATTAATAATCTTCCCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30905488 107 + 172585720 --CACCA---GC--TAAGTGTCTGCCAGTGACTTGTTA---GAAGGGCTCGTGATGGCAG--TGGTGAGGACGGAGGATGGTAAATGATAATAATTAATGATATTAATAACCTTCCCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30195030 107 - 170955103 --CACCA---GC--TAAGTGTCTGCCAGTGACTTGTTA---GAAGGGCTCGTGATTGCAG--TGGTGAGGACGGAGGATGGTAAATGATAATAATTAATGATATTAATAACCTTCCCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     443931 107 +   1495729 --CACCA---GC--TAAGTGTCTGCCAGTGACTTGTTA---GAAGGGCTCGTGATTGCAG--TGGTGAGGACGGAGGATGGTAAATGATAATAATTAATGATATTAATAACCTTCCCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     547539 107 -    863181 --CACCA---GC--TAAGTGTCTGCCAGTGACTTGTTA---GAAGGGCTGGTGATGGCAG--TGGTGAGGACAGAGGATGGTAAATGATAATAATTAATGATATTAATAACCTTCCCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29694257 107 -  71996105 --CACCA---GC--TAAGCGTCGGCCAGTGACTTGTTA---GAAGGGCTCGTGATGGCAG--TGGTGAGGACGGAGGATGGTAAATGATAATAATTAATGATATTAATAACCTTCCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     429780 107 -    735854 --CACCA---GC--TAAGTGTCTGCCAGTGACTTGTTA---GAAGGGCTCGTGATGGCAG--TGGTGAGGACGGAGGATGGTAAATGATAATAATTAATGATATTAATAACCTTCCCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     336793 107 -   1829203 --CACCA---GC--TAAGTGTCTGCCAGTGACTTGTTA---GAAGGGCTCGTGATGGCAG--TGGTGAGGATGGAGGATGGTAaatgataataattaatgatattaataatCTTCCCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30525143 107 + 171630274 --CACCA---GC--TAAGTGTCTGCCAGTAACTTGTTA---GAGGGGCTCATGATGACAG--TGATGAGAATGGAGGATGGtaaattatattaattaatgattttaataaGCTTCCCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           328570 107 +    515838 --CACCA---GC--TAAATGTCTGCCAGTAACTTCTTA---GAAGGGCTCATGATGGCAG--TAATGAGAATGGAGGATGGaaaattatattaattaatgattttaataatCTTCTCTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     959060 107 -   1771730 --CACCA---GT--TAAGTGTCTGCCAGTAACTTGTTA---GAAAGGCTCATGATGGCAG--TGATGAGAATGGAGGATGGTAAATTATATTAATTAATGATTTTAATAACCTTCCCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     143301 107 -    486031 --CACCA---GC--TAAGTGTCTGCCAGTAGCTTGTTA---GAAGGGCTCATGATGGCAG--TGATGAGAATGGAGGATGGTAAATTATATTAATTAATGATTTTAATAATCTTCCCTT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           384865  79 +  18854210 --CACAA---GA--CAGATGTCTGCCAGTGACTTGCTA--------------TATGGCAT--TGATGAAAATGAAGGAC-----------------AATAAGATTAGCAATCTTggctt
i otoGar3.GL873550         C 0 I 859
s mm10.chr17               58134265  86 -  94987271 --caaaa---acaacaaaTATCTGC------CTTGTTACCTAGAGGGCTCA--ATGGAGGTCTCATGCCGAGGAAGGACAGCAA--------------------CAAAGACCTTCAGTT
i mm10.chr17               I 3 C 0
s canFam3.chr35            26392450  63 +  26524999 TTCCCGG---GG--ACAGTGTCTGC-AGTGACCACATG-----------------AGTAG--TGATGAGAGC------------------------------ATCCAC-ACCTTCCCTT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               429194 389 + 123392446 I
e proCoq1.NW_012149775v1     391227 1829 -   1411461 I

a score=319984.000000
s hg38.chr6_GL000254v2_alt  1540288 41 +   4827813 CCATTTTCTACTA-----TACCATTTAG-TTTTTTG---AACAGTTTTGT-
s panTro5.chr6             30410122 41 + 175400573 CCATTTTCTACTA-----TACCATTTAG-TTTTTTG---AACAGTTTTGT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30644355 41 + 173848474 CCATTTTCTACTA-----TACCATTTAG-TTTTTTG---AACAGTTTTGT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     352394 41 +   2037526 TCATTTTCTACTA-----TACCATTTAG-TTTTTTG---AACAGTTTTGT-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75015389 41 + 122973662 CCATTTTCTACTA-----TATCTTTTAG-TTTTTTG---AACAGTtttgt-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30905595 41 + 172585720 CCATTTTATACTA-----TATCATTTAG-TTTTTTG---AACAGTtttgt-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30195137 42 - 170955103 CCATTTTATACTA-----TATCATTTAGTTTTTTTG---AACAGTTTTGT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     444038 42 +   1495729 CCATTTTATACTA-----TATCATTTAGTTTTTTTG---AACAGTTTTGT-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     547646 41 -    863181 CCATTTTATACTA-----TATCATTTAG-TTTTTTG---AACAGTtttgt-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29694364 41 -  71996105 CCATTTTATACTA-----TATCATTTAG-TTTTTTG---AACAGTtttgt-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     429887 41 -    735854 CCATTTTATACTA-----TACCATTTAG-TTTTTTG---AACAGTtttgt-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     336900 41 -   1829203 CCATTTTATGCCA-----TATCATTTAG-TTTTTTG---AACAGTtttgt-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30525250 47 + 171630274 CCATTTTTTACTCTATTTTATCATTTAG-GTTTTTTT--AACAGTTTTGT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           328677 49 +    515838 CCATTTTTTACTCTATTTTATCATTTGG-TTTTTTTTTAAACAGCtttgt-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     959167 46 -   1771730 CCATTTTTTACTCTATTTTATCATTTAG-TTTTTTT---AACGATTTTGT-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     143408 47 -    486031 CCATTTTTTACTCTATTTTATCATTTAG-TTTTTTTT--AACAGTTTTGT-
i aotNan1.NW_018496901v1   C 0 C 0
s mm10.chr17               58134351 33 -  94987271 -------CTAC-------GGCCCTTTAA-TCATTTCT--AGATGCTTTCT-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26392513 41 +  26524999 CCACTTTG-ATGG-----CACTTTCTAA-ACCCCCC---AACTTTTCTCTG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               429194 389 + 123392446 I
e proCoq1.NW_012149775v1     391227 1829 -   1411461 I
e otoGar3.GL873550           384944 859 +  18854210 I

a score=2113539.000000
s hg38.chr6_GL000254v2_alt  1540329 191 +   4827813 GTAAAAAGT--TTATT-TTTTGAAGTGACAGCATGCCAGttatttcattttatgctcatgcaatctacagactaattggcagcagtaaggattatcatctccatgtttcagatgacaaaactgagcccccaag----------tcttctaaggtcctgcaagtgaatggcagggctggga------cccaccgtcctggtccctggcgcc
s panTro5.chr6             30410163 191 + 175400573 GTAAAAAGT--TTATT-TTTTGAAGTGACAGCATGCCAGttatttcattttatgctcatgcaatctacagactaattggcaggggtaaggattatcatctccatgtttcagatgacaaaactgagcccccaag----------tcttctaaggtcctgcaagtgaatggcagggctggga------cccaccgtcctggtccctggcgcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30644396 191 + 173848474 GTAAAAAGT--TTATT-TTTTGAAGTGACAGCATGCCAGttatttcattttatgctcatgcaatctacagactaattggcaggggtaaggattatcatctccatgtttcagatgacaaaactgagcccccaag----------tcttctaaggtcctgcaagtgaatggcagggctggga------cccaccgtcctggtccctggcgcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     352435 191 +   2037526 GTAAAAAGT--TTATT-TTTTGAAGTGACAGCATGCCAGttatttcattttatgctcatgcaatctacagactaattggcaggggtaaggattatcatctccatgtttcagatgacaaaactgagcccccaag----------tcttctaaggtcctgcaagtgaatggcagggctggga------cccaccgtcctggtccctggcgcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75015430 191 + 122973662 gtagaaagt--ttatt-ttttgaagtgacaccacgccagttatttcattttatgctcatgcaatctacagactaattggcaggggtaaggattatcatcccgaagtttcagatgacaaaactgagccgccaag----------tctccaaaggtcctgcaagtgaatggcagggctggga------cccaccatcctggtccctggcacc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30905636 191 + 172585720 atagaaagt--ttatt-ttttgaagtgacaccatgccagttatttcattttatgctcatgcaatctacagaataattggcagggggaaggattatcatccccatgtttcagatgacaaaactgagcccccaag----------tctcctaaggtcctgcaagtgaatggcagggctggga------ctcaccgtcctggtccctggctcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30195179 191 - 170955103 ATAGAAAGT--TTATT-TTTTGAAGTGACACCATGCCAGttatttcattttatgctcatgcaatctacagaataattggcagggggaaggattatcatccccatgtttcagatgacaaaaccgagcccccaag----------tctcctaaggtcctgcaagtgaatggcagggctggga------ctcaccgtcctggtccctggctcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     444080 191 +   1495729 ATAGAAAGT--TTATT-TTTTGAAGTGACACCATGCCAGttatttcattttatgctcatgcaatctacagaataattggcagggggaaggattatcatccccatgtttcagatgacaaaactgagcccccaag----------tctcctaaggtcctgcaagtgaatggcagggctggga------ctcaccgtcctggtccctggctcc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     547687 191 -    863181 atagaaagt--ttatt-ttttgaagtgacaccatgccagttatttcattttatgctcatgcaatctacagaataattggcagggggaaggattatcatccccatgtttcagataacaaaactgagcccccaag----------tctcctaaggtcctgcaagtgaatggcagggctggga------ctcaccgtcctggtccctggctcc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29694405 191 -  71996105 atagaaagt--ttatt-ttttgaagtgacaccatgccagttatttcattttatgctcatgcaatctacagaataattggcagggggaaggattatcatccccatgtttcagatgtcaaaactgagcccccaag----------tctcctaaggtcctgcaagtgaatggcagggctggga------ctcaccgtcctggtccctggctcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     429928 191 -    735854 atagaaagt--ttatt-ttttggagtgataccatgccagttatttcattttatgctcatgcaatctacagaataattggcagggggaaggattatcatccccatgtttcagatgacaaaactgagcccccaag----------tctcctaaggtcctgcaagtgaatggcagggctggga------ctcaccgtcctggtccctggctcc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     336941 191 -   1829203 atagaaagt--ttatt-ttttgaagtgacaccatgccagttatttcattttatgctcatgcaatctacagaataattggcagggggaaggattatcatccccatgtttcagatgacaaaactgagcccccaag----------tctcctaaggtcctgcaagtgaatggcagggctggga------cccactgtcctggtccctggctcc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30525297 190 + 171630274 GTAGAAAAT--TTATT-TTATGAAGTGACACCATGCCAGttatttcattttatgcccatgcaatctacagaataattggcaggggtaaggatcaccatccccatgtttcagatgacaaaactgaggc-ccaag----------tctcctaaggtcctgcaagtgaatggcagggctggga------cccaccatcctggtccctggctcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           328726 190 +    515838 atagaaaat--tcatt-ttctgaagtgacaccatgccagttacttcattttatgcccatgcaatccacacaataaatggcaggggtaaggatcaccatcctcatgtttcagatgacaaaactgaggc-ccaag----------tctcctaaggtcctgcaagtgaatggcagcgctggga------cccaccatcctggtccctggctcc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     959213 190 -   1771730 GTAGAAAAT--TTATT-TCCTGAAGTGACATCATGCCAGttatttcattttatgcccatgcgatctacagaataattggcaggggttaggatcaccatcctcatgtttcagatgacaaaactgaggc-ccaag----------tctcctaaggtcctgcaagtgaatggcagggctggga------cccaccatcctggtccctggctcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     143455 190 -    486031 GTAGAAAAT--TTATT-CTCTGAAGAGACACCATGCCAGttatttcattttatgcccatgcaatctgcagaataattggcagggataaggatcaccatccccatgtttcagatgacaaaactgaggc-ccaag----------tctcctaaggtcctgcaagtgaatggcagggctggga------cccaccatcctgatccctggctcc
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           385803 186 +  18854210 gcAGATAAT--TTATT-TTTTGAAGTGACATTAT--CAGttacttcattttatgcttatgtaattttttaaagaagtggagaggttaaggattatcacccccatactttagaggacaaaac--aggcctcaagaggaagtgactctctcaaggtcctacaataggatatcagggctggga------cccACTGCCCTGG-----------
i otoGar3.GL873550         I 859 C 0
s mm10.chr17               58134384 170 -  94987271 GTAGATGATGATTATTGTTCTAAAGCCATGCCATGTCAAT-------GTCTAAGCTCATGTGGACTCTGGGATAAACAAGGAGGGTAAGACCCA-CATACCCATATTTTACACAGTTAAACTGAGAGCCTGGGAGGAAGAATTTCTTCAAAGGCCATATAA--------CAG------------------------TGGTACCTGTCTCC
i mm10.chr17               C 0 I 3
s canFam3.chr35            26392554 179 +  26524999 GTGGACCAT--TTGCT-TTGTGAAATGACACTGTGAC--------CATCATGGGCTCA-GTCAGCCACAGAAG----GACACAGGGCAGG----------CCAGGGGTCAGGAGA-GAGACTGAGACCTGTGG-GGCACTCTTTCCCCTGAGGTCCTGCACGCAGA---CAGCTCTGGGACAGACTCCTCCTGTGCTGGCTGCCCACTGC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               429194 389 + 123392446 I
e proCoq1.NW_012149775v1     391227 1829 -   1411461 I

a score=598290.000000
s hg38.chr6_GL000254v2_alt  1540520 41 +   4827813 ctgcccagGGACGGCCTCTCACCTGCATGAGCTCTGCAGCT
s panTro5.chr6             30410354 41 + 175400573 ctgcccagGGACAGCCTCTCACCTGCATGAGCTCTGCAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30644587 41 + 173848474 ctgcccagGGACAGCCTCTCACCTGCATGAGCTCTGCAGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     352626 41 +   2037526 ctgcccagGGACGGCCTCTCACCTGCATGAGCTCTGCAGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75015621 41 + 122973662 ctgtccagGGACGGCCTCTCACCTGCATGAGTTCTGCAGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30905827 41 + 172585720 ctgtccagggatggcctctcacctgcaTGAGCTCTGCAGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30195370 41 - 170955103 ctgtccagggatggcctctcacctgcaTGAGCTCTGCAGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     444271 41 +   1495729 ctgtccagggatggcctctcacctgcaTGAGCTCTGCAGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     547878 41 -    863181 ctgtccagggatggcctctcacctgcaTGAGCTCTGCAGCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29694596 41 -  71996105 ctgtccagggatggcctctcacctgcaTGAGCTCTGCAGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     430119 41 -    735854 ctgtccagggatggcctctcacctgcaTGAGCTCTGCAGCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     337132 41 -   1829203 ctgcccagggatggcctctcacctgcaTGAGCTCTGCAGCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30525487 40 + 171630274 CTGCCTAGGGAC-GCCTCTCACCTGCATGAGCTCTGCAGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           328916 41 +    515838 ctgcccagGGACGGCCTCTCACCTGCATGAGCTCTGCAGCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     959403 41 -   1771730 ctgcccagGGACGGCCTCTCACCTGCATGAGCTCTGCAGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     143645 41 -    486031 ctgcccagGGACGGCCTCTCACCTGCATGAGCTCTGCAGCT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     393056 41 -   1411461 CTGCCCTGGGAGGGTCTCTCACCTGCATGAGCTCCGTCGCC
i proCoq1.NW_012149775v1   I 1829 C 0
s otoGar3.GL873550           385989 30 +  18854210 -----------AGGGCTCTCACCTGCATGAGCTCTGCAGCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58134557 40 -  94987271 TTGGGCCAAGACGA-CTCTCACCTGCATCAGCTCTGCAGCT
i mm10.chr17               I 3 C 0
s canFam3.chr35            26392733 41 +  26524999 TGGTCCCAGGAAGGCCACTCACCTGCAGGAGCTCTGCAGCT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               429194 389 + 123392446 I

a score=1088767.000000
s hg38.chr6_GL000254v2_alt  1540561 59 +   4827813 GGCTGCTGCGCCTTGCCCTCCAGTTCGGAGATGACCAGGGCCAGCCGGGCAAGCTCCCC
s panTro5.chr6             30410395 59 + 175400573 GGCTGCTGCGCCTTGCCCTCCAGTTCGGAGATGACCAGGGCCAGCCGGGCAAGCTCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30644628 59 + 173848474 GGCTGCTGCGCCTTGCCCTCCAGTTCGGAGATGACCAGGGCCAGCCGGGCAAGCTCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     352667 59 +   2037526 GGCTGCTGCGCCTTGCCCTCCAGTTCGGAGATGACCAGGGCCAGCCGGGCAAGCTCCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75015662 59 + 122973662 GGCTGCTGCGCCTTGCCCTCCAGTTCAGAGATGACCAGGGCCAGCCGGGCGAGCTCCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30905868 59 + 172585720 GGCTGCTGTGCCTTGCCCTCCAGTTCGGAGATGACCAGGGCCAGCCGGGCGAGCTCCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30195411 59 - 170955103 GGCTGCTGTGCCTTGCCCTCCAGTTCGGAGATGACCAGGGCCAGCCGGGCGAGCTCCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     444312 59 +   1495729 GGCTGCTGTGCCTTGCCCTCCAGTTCGGAGATGACCAGGGCCAGCCGGGCGAGCTCCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     547919 59 -    863181 GGCTGCTGTGCCTTGCCCTCCAGTTCGGAGATGACCAGGGCCAGCCGGGCGAGCTCCCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29694637 59 -  71996105 GGCTGCTGTGCCTTGCCCTCCAGTTCGGAGATGACCAGGGCCAGCCGGGCGAGTTCCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     430160 59 -    735854 GGCTGCTGTGCCTTGCCCTCCAGTTCGGAGATGACCAGGGCCAGCCGGGCGAGCTCCCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     337173 59 -   1829203 GGCTGCTGTGCCTTGCCCTCCAGTTCGGAGATGACCAGGGCCAGCCGGGCGAGCTCCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30525527 59 + 171630274 GGCTGCTGTGCCTTGCCCTCCAGTTCGGAGATAACCAGGGCCAGCCGGGCGAGCTCCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           328957 59 +    515838 GGCTGCTGTGCCTTGCCCTCCAGTTCGGAGATGATCAGGGCCAGCCGGGCGAGCTCTCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     959444 59 -   1771730 GGCTGCTGTGCCTTGCCCTCCAGTTCGGAGATGATCAGAGCCAGCCGGGCGAGCTCTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     143686 59 -    486031 GGCTGCTGTGCCTTGCCCTCCAGTTCGGAGATAACCAGGGCCAGCCGGGCGAGCTCCCC
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               429583 59 + 123392446 GGCTGCTGCGCCTGGCCCTCCAGCTGGGAGATGGCCAGGGCCAGCCAGGCGAGCTCCCC
i micMur3.chr6             I 389 I 14
s proCoq1.NW_012149775v1     393097 59 -   1411461 GGCTGCTGTGCCTTGCCCTCCAGCTCAGAGATGACCAGGGCCAGCCGGGCGAGTTCCCC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           386019 59 +  18854210 GGTTGCTGCGCCTTGCCCTCCAGTTCGGAGATGACCAGCGTCAGCCGAGCAAGCTCCCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58134597 59 -  94987271 GGCTGTCGTGCCTTGCCCTCCAGCTCGGAGATGACCAGAGTCAACCGGTCAAGCTCACT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26392774 59 +  26524999 GGCTGCTGTGCCTTGCCCTCCAGCTCAGAGATGACCAGCGCCAGCCGGGCCAGCTCCCC
i canFam3.chr35            C 0 C 0

a score=907875.000000
s hg38.chr6_GL000254v2_alt  1540620 54 +   4827813 GACGCCCCGGCTCTTGAACTTCTCCCTGCCCTCCGTGAGCTCCTGCTCCAGCTT
s panTro5.chr6             30410454 54 + 175400573 GACGCCCCGGCTCTTGAACTTCTCCCTGCCCTCCGTGAGCTCCTGCTCCAGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30644687 54 + 173848474 GACGCCCCGGCTCTTGAACTTCTCCCTGCCCTCCGTGAGCTCCTGCTCCAGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     352726 54 +   2037526 GACGCCCCGGCTCTTGAACTTCTCCCTGCCCTCCGTGAGCTCCTGCTCCAGCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75015721 54 + 122973662 GACGCCCCGGCTCTTGAACTTCTCCCTGCCCTCCGTGAGCTCCTGCTCCAGCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30905927 54 + 172585720 GACGCCCCGGCTCTTGAACTTCTCCCTGCCCTCTGTGAGCTCCTGCTCCAGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30195470 54 - 170955103 GACGCCCCGGCTCTTGAACTTCTCCCTGCCCTCTGTGAGCTCCTGCTCCAGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     444371 54 +   1495729 GACGCCCCGGCTCTTGAACTTCTCCCTGCCCTCTGTGAGCTCCTGCTCCAGCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     547978 54 -    863181 GACGCCCCGGCTCTTGAACTTCTCCCTGCCCTCTGTGAGCTCCTGCTCCAGCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29694696 54 -  71996105 GACGCCCCGGCTCTTGAACTTCTCCCTGCCCTCTGTGAGCTCCTGCTCCAGCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     430219 54 -    735854 GACGCCCCGGCTCTTGAACTTCTCCCTGCCCTCTGCGAGCTCCTGCTCCAGCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     337232 54 -   1829203 GACGCCCCGGCTCTTGAACTTCTCCCTGCCCTCTGTGAGCTCCTGCTCCAGCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30525586 54 + 171630274 GACGCCCCGGCTCTTGAACTTCTCTCTGCCCTCCGTGAGCTCCTGCTCCAGCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           329016 54 +    515838 GACGCCCCGGCTCTTGAACTTCTCTCTGCCCTCCGTGAGCTCCTGCTCCAGCTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     959503 54 -   1771730 GACGCCCCGGCTCTTGAACTTCTCTCTGCCCTCTGTGAGCTCCTGCTCCAGCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     143745 54 -    486031 GACGCCCCGGCTCTTGAACTTCTCTCTGCCCTCCGTGAGCTCCTGCTCCAGCTT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     393156 54 -   1411461 GACGCCCCGGGCCTTGAACTTCTCCCTGCCCTCCGTGAGCTCCTGCTCCAACTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           386078 54 +  18854210 GACGCCCCGGGTCTTGAACTTCTCACTGCCCTCTGTGAGCTCCTGCTCCAGCTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58134656 54 -  94987271 GACGCCCCGGGTCTTGAACTTCTCCCTGCCCTCGGTGAGGAGCTGCTCCAAGGT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26392833 54 +  26524999 GACGCCCCGGCTCTTGAACTTTTCCCGCCCTTCTGTGAGCTCCTGTTCCAGCTT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               429642 14 + 123392446 I

a score=2296660.000000
s hg38.chr6_GL000254v2_alt  1540674 139 +   4827813 CGCCAGCTGTTCCAGCAGGTGTTCCTCCCGCTCCCTCAGGAACTGATGACCCTGCTCAAACTCAGCCACAATGTACTGCCTCTGGTCCTGGAGCTTCTTCTGCAGGGGGCAGGAAGGGGAGAAGGGC--TGACA--------CCTCTGC
s panTro5.chr6             30410508 139 + 175400573 CGCCAGCTGTTCCAGCAGGTGTTCCTCCCGCTCCCTCAGGAACTGATGACCCTGCTCAAACTCAGCCACAATGTACTGCCTCTGGTCCTGGAGCTTCTTCTGCAGGGGGCGGGAAGGGGAGAAGGGC--TGACA--------CCTCTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30644741 139 + 173848474 CGCCAGCTGTTCCAGCAGGTGTTCCTCCCGCTCCCTCAGGAACTGATGACCCTGCTCAAACTCAGCCACAATGTACTGCCTCTGGTCCTGGAGCTTCTTCTGCAGGGGGCGGGAAGGGGAGAAGGGC--TGACA--------CCTCTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     352780 139 +   2037526 CGCCAGCTGTTCCAGCAGGTGTTCCTCCCGCTCCCTCAGGAACTGATGACCCTGCTCAAACTCAGCCACAATGTACTGCCTCTGGTCCTGGAGCTTCTTCTGCAGGGGGCGGGAAGGGGAGAAGGGC--TGACA--------CCTCTGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75015775 138 + 122973662 CGCCAGCTGTTCCAGCAGGTGTTCCTCCCGCTCCCTCAGGAACTGATGACCCTGCTCAAACTCAGCCACAATGTACTGCCTCTGGTCCTGGAGCTTCTTCTGCA-GGGGCGGGAAGGGGAGAAGGGC--TGACA--------CCTCTGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30905981 139 + 172585720 CGCCAGCTGTTCCAGCAGGTGTTCCTCCCGCTCCCTCAGGAACTGATGACCCTGCTCAAACTCAGCCACAATGTACTGCCTCTGGTCCTGGAGCTTCTTCTGCAACGGGCAGGAAGGGGAGAAGGGC--TGACA--------CCTCCGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30195524 139 - 170955103 CGCCAGCTGTTCCAGCAGGTGTTCCTCCCGCTCCCTCAGGAACTGATGACCCTGCTCAAACTCAGCCACAATGTACTGCCTCTGGTCCTGGAGCTTCTTCTGCAACGGGCAGGAAGGGGAGAAGGGC--TGACA--------CCTCCGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     444425 139 +   1495729 CGCCAGCTGTTCCAGCAGGTGTTCCTCCCGCTCCCTCAGGAACTGATGACCCTGCTCAAACTCAGCCACAATGTACTGCCTCTGGTCCTGGAGCTTCTTCTGCAACGGGCAGGAAGGGGAGAAGGGC--TGACA--------CCTCCGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     548032 139 -    863181 CGCCAGCTGTTCCAGCAGGTGTTCCTCCCGCTCCCTCAGGAACTGATGACCCTGCTCAAACTCAGCCACAATGTACTGCCTCTGGTCCTGGAGCTTCTTCTGCAACGGGCAGGAAGGGGAGAAGGGC--TGACA--------CCTCCGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29694750 139 -  71996105 CGCCAGCTGTTCCAGCAGGTGTTCCTCCCGCTCCCTCAGGAACTGATGACCCTGCTCAAACTCAGCCACAATGTACTGCCTCTGGTCCTGGAGCTTCTTCTGCAACGGGCAGGAAGGGGAAAAGGGC--TGACA--------CCTCCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     430273 139 -    735854 CGCCAGCTGTTCCAGCAGGTGTTCCTCCCGCTCCCTCAGGAACTGATGACCCTGCTCAAACTCAGCCACAATGTACTGCCTCTGGTCCTGGAGCTTCTTCTGCAACGGGCAGGAAGGGGAGAAGGGC--TGACA--------CCTCCGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     337286 139 -   1829203 CGCCAGCTGTTCCAGCAGGTGTTCCTCCCGCTCCCTCAGGAACTGATGACCCTGCTCAAACTCAGCCACAATGTACTGCCTCTGGTCCTGGAGCTTCTTCTGCAACGGGCAGGAAGGGGAGAAGGGC--TGACA--------CCTCTGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30525640 139 + 171630274 CGCCAGCTGTTCCAGCAGGTGCTGCTCCCGCTCCCTCAGGAACTGATGACCCTGCTCAAACTCGGCTACAATATACTGCCTCTGGTCCTGGAGCTTCTTCTGCAGGGGGCAGGAAGGGGAGAAGGGC--TGACA--------CCTCTGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           329070 147 +    515838 CGCCAGCTGTTCCAGCAGGTGCTGCTCCCGCTCCCTCAGGAACTGATGACCCTGCTCAAACTCAGCCACAATGTACTGCCTCTGGTCCTGGAGCTTCTTCTGCAGGGGGCAGGAACGGGAGAAGAGC--TGACACCTTCTCCCCTTCTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     959557 139 -   1771730 CGCCAGCTGTTCCAGCAGGTGCTGCTCCCGCTCCCTCAGGAACTGATGACCCTGCTCAAACTCAGCCACAATGTACTGCCTCTGGTCCTGGAGCTTCTTCTGCAGGGGGCAGGAAGGGGAGAAGAGC--TGACA--------CCTCTGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     143799 138 -    486031 CGCCAGCTGTTCCAGCAGGTGCTGCTCCCGCTCCCTCAGGAACTGATGACCCTGCTCAAACTCTGCCACAATGTACTGCCTCTGGTCCTGGAGCTTCTTCTGCAGGGGGCAGGAAGGGGAG-AGGGC--TGACA--------CCTCTGC
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               429656 137 + 123392446 CGCCAGCTGGTCTGGCAGGTGCTGCTCCTGCTCCCTCAGGAACTGGTGGTCCTGCGCAGACTCTGCCACGATGTGCCGCCTCTGGTCCTGGAGCTTCATCTGCA-GGGGCAGGAC-AGGGGAAGGGC--TGACG--------CCTCTGC
i micMur3.chr6             I 14 I 1486
s proCoq1.NW_012149775v1     393210 138 -   1411461 TGCCAGCTGGTCCAGCAGGTGCTGCTCCCGCTCTCTCAGGAACTGGTGGCCCTGCTCAAACTCAGCCACGATGTACTGCCTCTGGTCCTGGAGCTTCTTCTGCA-GGGGCGGGATGAGGGGAAGGGC--TGACA--------GCTCTGC
i proCoq1.NW_012149775v1   C 0 I 1
s otoGar3.GL873550           386132 138 +  18854210 TGTCAACTGGTCCAGCAGATGCTGCTCCCGCTCCCTCAGGAACTGATGGCCCTGCTCGAACTCAGCCACGATGCACTGCCTCTGATCCTGGAGCTTCTTCTGGA-GGGAGAGGAAGGGGAGAAGAGC--TGACA--------CCTCCAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58134710 140 -  94987271 GGCCAGCTGGTCTAGCAGGTGCTGCTCCCGCTTCTTTAGAAACTGGTGGCCCTGCTTAAATTCCGCCACAATGTACTGCCTCTGCTCCTGCAGCTTTGTCTGTAAGGTAGGGGACAGGGTGCTTGTCTGTGATA--------CCTCTA-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26392887 133 +  26524999 GGCCAGCTGCTCCAGCAGATGCCGCTCCCGCTCCTGCAGGAACTGGTGGCCTTGCTCGAACTCAGCCACCACGTACTGCCGCTGGTCCTGGAGCTTCTTCTGCA-GGGGGGTGAGGGGGAGG-------TGATG--------CTCCTTC
i canFam3.chr35            C 0 C 0

a score=267313.000000
s hg38.chr6_GL000254v2_alt  1540813 27 +   4827813 TCAGGG---------TGG------------AGGGCCCAGTGCTGGAGG
s panTro5.chr6             30410647 27 + 175400573 TCAGGG---------TGG------------AGGGCCCAGTGCTGGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30644880 27 + 173848474 TCAGGG---------TGG------------AGGGCCCAGTGCTGGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     352919 27 +   2037526 TCAGGG---------TGG------------AGGGCCCAGTGCTGGAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75015913 27 + 122973662 TCAGGG---------TGG------------AGGGCCCAGTGCTGGAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30906120 27 + 172585720 TCAGGG---------TGG------------AGGGCCCAGCACTGGAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30195663 27 - 170955103 TCAGGG---------TGG------------AGGGCCCAGCACTGGAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     444564 27 +   1495729 TCAGGG---------TGG------------AGGGCCCAGCACTGGTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     548171 27 -    863181 TCAGGG---------TGG------------AGGGCCCAGCACTGGAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29694889 27 -  71996105 TCAGGG---------TGG------------AGGGCCCAGCACTGGAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     430412 27 -    735854 TCAGGG---------TGG------------AGGGCCCAGCACTGGAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     337425 27 -   1829203 TCAGGA---------TGG------------AGGGCCCAGCACTGGAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30525779 39 + 171630274 TCAGGG---------TGGGTACACACCTCCAGGGCCCAGCACTGGAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           329217 29 +    515838 CCAGTG---------TTGGG----------AGGGCCCAGCACTGGACG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     959696 27 -   1771730 TCAGGG---------TGG------------AGGGTCCAGCACTGGAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     143937 27 -    486031 TCAGGG---------TGG------------AAGGCCCAGCACTGGAGG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     393349 27 -   1411461 CTGGGG---------TGG------------AGGACCCAGCGTTGGAGG
i proCoq1.NW_012149775v1   I 1 I 58
s otoGar3.GL873550           386270 24 +  18854210 CT---G---------TGG------------AGTACCAGGACCTAGAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58134850  5 -  94987271 -------------------------------GGAAC------------
i mm10.chr17               C 0 I 2
s canFam3.chr35            26393020 36 +  26524999 CCTGGGCCATGGCCCTGC------------AGGGTCTGCTGTTGGAGG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               429793 1486 + 123392446 I

a score=633292.000000
s hg38.chr6_GL000254v2_alt  1540840 61 +   4827813 TGTGCAAGGCTGGCTCGTTC--------ACCTCGCTACCCCCGTTC-----------AGGAATTCTACAGGATCTGGAGT
s panTro5.chr6             30410674 61 + 175400573 TGTGCAAGGCTGGCTCGTTC--------ACCTCGCTACCCCCGTTC-----------AGGAATTCTACAGGATCTGGAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30644907 61 + 173848474 TGTGCAAGGCTGGCTCGTTC--------ACCTCGCTACCCCCGTTC-----------AGGAATTCTACAGGATCTGGAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     352946 61 +   2037526 TGTGCAAGGCTGGCTCGTTC--------ACCTCGCTACCCCCGTTC-----------AGGAATTCTACAGGATCTGGAGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75015940 61 + 122973662 TGTGCAAGGCTGGCTCGTTC--------ACCTTGCTACCCCCGTTC-----------AGGAATTCTACAGGATCTGGAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30906147 61 + 172585720 TGTGCAAGGCTGGTTCGTTC--------ACCTCGGTACCCCCGTTC-----------AGGAATTCTACAGGATCTGGAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30195690 61 - 170955103 TGTGCCAGGCTGGTTCGTTC--------ACCTCGGTACCCCCGTTC-----------AGGAATTCTACAGGATCTGGAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     444591 61 +   1495729 TGTGCCAGGCTGGTTCGTTC--------ACCTCGGTACCCCCGTTC-----------AGGAATTCTACAGGATCTGGAGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     548198 61 -    863181 TGTGCCAGGCTGGTTCGTTC--------ACCTCGGTATCCCCGTTC-----------AGGAATTCTACAGGATCTGGAGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29694916 61 -  71996105 TGTGCAAGGCTGGTTCGTTC--------ACCTCGGTACCCCCGTTC-----------AGGAATTCTACAGGATCTGGAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     430439 61 -    735854 TGTGCCAGGCTGGTTCGTTC--------ACCTCGGTACCCCCGTTC-----------AGGAATTCTACAGGATCTGGAGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     337452 61 -   1829203 TGTGCAAGGCTGGTTCGTTC--------ACCTCGGTACCCCTGTTC-----------AGGAATTCTACAGGATCTGGAGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30525818 66 + 171630274 TGCACAAGGCTGGCTCATTCACCTAGGTACCTCGGTACCACCGTTC-----------AAGAATTCCACAGGATCT---GC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           329246 61 +    515838 TGCACAAGGCTGGCTCATTC--------ACCTCGGTACCCCCGTTC-----------AAGAATTCCACAGGATCTGGAGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     959723 61 -   1771730 TGCACAAGGCTGGCTCATTC--------ACCTCGGTACCCTCGTTC-----------AAGAATTCCACAGGATGTGGAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     143964 61 -    486031 TGCACAAGGCTGGCTCATTC--------ACCTGGGTACCCCTGTTC-----------AAGAATTCCACAGGATCTGGAGC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           386294 72 +  18854210 GACACCAGGACGGCTCCTTT--------TCTTTGTTATTCCCATTCTATTCCCATTTGGGAATTCTGCAGCATTTGGGGT
i otoGar3.GL873550         C 0 I 9
s mm10.chr17               58134857 58 -  94987271 TGATTGATACCCGCTCGATC--------CTCTGGGGACTCTGGCTT-----------GTGAATCCTA---GACCTTCGGT
i mm10.chr17               I 2 C 0
s canFam3.chr35            26393056 39 +  26524999 GGCACAAGGCTGGCCC---C--------ACCCC---ACCCCTCTTC-----------AGGGGCT----------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               429793 1486 + 123392446 I
e proCoq1.NW_012149775v1     393376 58 -   1411461 I

a score=851654.000000
s hg38.chr6_GL000254v2_alt  1540901 77 +   4827813 GGGAGGAGCTA----CAGAGGGTTCCTGGTCCA-CACTCCGCTTCTCAAAGAAGACTCCAGTAATGAATTAGTTCAGTTCAC-
s panTro5.chr6             30410735 77 + 175400573 GGGAGGAGCTA----TACAGGGTTCCTGGTCCA-CACTCCTCTTCTCAAAGAAGACTCCAGTAATGAATTAGTTCAGTTCAC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30644968 77 + 173848474 GGGAGGAGCTA----TAGAGGGTTCCTGGTCCA-CACTCCTCTTCTCAAAGAAGACTCCAGTAATGAATTAGTTCAGTTCAC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     353007 77 +   2037526 GGGAGGAGCTA----TAGAGGGTTCCTGGTCCA-CACTCCTCTTCTCAAAGAAGACTCCAGTAATGAATTAGTTCAGTTCAC-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75016001 77 + 122973662 GGGAGGAGCTA----TAGAGGGTTCCTGGTCCA-CACTCCTCTTCTCAAAGAAGACTCCAGTAATGAATTAGTTCAGTTCAC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30906208 77 + 172585720 GGGAGGAGCTA----TAGAGGGCTCCTGGTCCA-CACTCCTCTTCTCAAAGAAGACACCAGTAATGAATTAGTTCAGTTCAC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30195751 77 - 170955103 GGGAGGAGCTA----TAGAGGGCTCCTGGTCCA-CACTCCTCTTCTCAAAGAAGACACCAGTAATGAATTAGTTCAGTTCAC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     444652 77 +   1495729 GGGAGGAGCTA----TAGAGGGCTCCTGGTCCA-CACTCCTCTTCTCAAAGAAGACACCAGTAATGAATTAGTTCAGTTCAC-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     548259 77 -    863181 GGGAGGAGCTA----TAGAGGGCTCCTGGTCCA-CACTCCTCTTCTCAAAGAAGACATCAGTAATGAATTAGTTCAGTTCAC-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29694977 77 -  71996105 GGGAAGAGCTA----TAGAGGGCTCCTGGTCCA-CACTCCTCTTCTCAAAGAAGACACCAGTAATGAATTAGTTCAGTTCAC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     430500 77 -    735854 GGGAGGAGCTA----TAGAGGGCTCCTGGTCCA-CACTCCTTTTCTCAAAGAAGACACCAGTAATGAATTAGTTCAGTTCAC-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     337513 77 -   1829203 GGGAGGAGCTA----TAGAGGGCTCCTGGTCCA-TACTTTTCTTCTCAAAGAAGACACCAGTAATGAATTAGTTCAGTTCAC-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30525884 69 + 171630274 GGGAGAAGCTA----TAGAGGGCTCCCGGTTCA-CACTCCTC--------AAAGACCCCAGTAATTAATTAGTTCAGTTCAC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           329307 67 +    515838 GGGAGAAGCTA----TAGAGGGCTCCCGGCGCA-CACTCCTC----------AGACACTAGTAATGAATTAGTTCAGTTCAC-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     959784 69 -   1771730 GGGAGAAGCTA----TAGAGGGCTCCCGGTCCA-CACTCCTC--------AAAGACACCAGTAATGAATTAGTTCCGTTCAC-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     144025 68 -    486031 GGGAGAAGCTA----TAGAGGGCTCCCGGTCCA-CACTCCTC--------AAAGACACCAGTAATGAATTAGTTCA-TTCAC-
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     393434 77 -   1411461 GGGAGGAGCTA----TCAAAGGCTCCTGGTCCA-CCCTCCTCTTCTCAAAGAAGGCGCGAGCAGTGAATCAGTTCAGTTCAC-
i proCoq1.NW_012149775v1   I 58 I 989
s otoGar3.GL873550           386375 75 +  18854210 GGGAGGAGCTA----TCGAGGGCTCCTGGTTCACCCCTCCTTTTCTCAAAGTGGA---GAGAAGTGAATGCATTCAGTACAC-
i otoGar3.GL873550         I 9 C 0
s mm10.chr17               58134915 71 -  94987271 ---AGGAGTTGGCACTGGGATGCTCCTGCTTCA-CCCTCTTCTCCTT------GAGACTTGTCA-GAGTCTATTCCCTTCAC-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26393095 40 +  26524999 --AAGGGGTGG----TATAGCATGCCTGGGCCA-ACCTGGCC------------------------------------TCACA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               429793 1486 + 123392446 I

a score=710628.000000
s hg38.chr6_GL000254v2_alt  1540978 67 +   4827813 CCCACCACTATATGGTCAAAACCCTGTCTCCACCTGACTGGTCAGCCACAATCTGTTCTAGCTAAAC
s panTro5.chr6             30410812 67 + 175400573 CCCACCACTATATGGTCAAAACCCTGTCTCCACCTGACTTGTCAGCCACAATCTGTTCTAGCTAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30645045 67 + 173848474 CCCACCACTATATGGTCAAAACCCTGTCTCCACCTGACTTGTCAGCCACAATCTGTTCTAGCTAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     353084 67 +   2037526 CCCACCACTATATGGTCAAAACCCCGTCTCCACCTGACTGGTCAGCCACAATCTGTTCTAGCTAAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75016078 67 + 122973662 CCCACCACTATATGATCAAAACCTTGTCTCCACCTGCCTGGTCAGCCACAATCTGTTCTAGTGAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30906285 67 + 172585720 CCCACCGCTATATGATCAAAACCCTGTCTCTATCTGACTGGTCAGCCACAGTCTGTTCTAGCTAAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30195828 67 - 170955103 CCCACCGCTATATGATCAAAACCCTGTCTCTACCTGACTGGTCAGCCACAGTCTGTTCTAGCTAAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     444729 67 +   1495729 CCCACCGCTATATGATCAAAACCCTGTCTCTACCTGACTGGTCAGCCACAGTCTGTTCTAGCTAAGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     548336 67 -    863181 CCCACCGCTATATGATCAAAACCCTGTCTCTACCTGACTGGTCAGCCACAGTCTGTTCTAGCTAAGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29695054 67 -  71996105 CCCACCACTATATGATCAAAACCCTGTCTCTACCTGACTGGTCAGCCACAGTCTGTTCCAGCTAAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     430577 67 -    735854 CCCACCGCTATATGATCAAAACCCTGTCTCTACCTGACTGGTCAGCCACAGTCTGTTCTAGCTAAGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     337590 67 -   1829203 CCCACCACTATGTGATCAAAACCCTGTCTCTATCTGACTGGTCAGCCACAGTCTGTTCTAGCTAAGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30525953 67 + 171630274 TCTGCCACTACATGACGAAAACCCTGTCTCTACCTGACTAGTCAACCACAATCTGTTTTAGCTAAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           329374 67 +    515838 TCCGCCACTACGTGATGAAAACCCTGTCTCCACCTGACTGGTCAGCCACGATCTGTTTTAGCTAAAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     959853 67 -   1771730 TCCACCACTACATGATGAAAACCCTGTCTCCACCTGACTGGTTAGCCACGATCTGTTTTAGCTAAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     144093 67 -    486031 TCCGCCACTAGATGATGAAAACCCTGTCTCCACCTGACTGGTCAGCCACGATCTGTTTTAGCTAAAC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           386450 67 +  18854210 TCAGCTGCTGCATAATCAGGACCCTGACTCTGCCTGCCTGTTCAGCCAGAATCTGCTCTAGGCAAAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58134986 54 -  94987271 ----------TGTCCTCAAAGC--TGACTCGGCCTGACTGCTCTGTCACTATTCGTTCTAGGTGAC-
i mm10.chr17               C 0 C 0
s canFam3.chr35            26393135 37 +  26524999 -------------GGGCGGGATCCTG-----ACCTGAC------------ACGCATCCTACATAAGC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               429793 1486 + 123392446 I
e proCoq1.NW_012149775v1     393511 989 -   1411461 I

a score=3017502.000000
s hg38.chr6_GL000254v2_alt  1541045 327 +   4827813 CAGTACGCTCTGGGGCCCCTAGAGAAACTCTGTGGGTCTCACTCATGAGCCGACGCACTTTTCCCTCCTGGACAAAA---TCtgtcacctcttccaggaagttttgcttgaTTAATGTCATCTAAGCCTGACCAGCCCTCTCTTCAGCACCCCACTGTTCAGTCTAAAATATCTATATGTACCCCACCCCTGCCATGTAAGACTGCATCCTGTTTCCTCAGCAAAATTGTGTGACGTCTGTGCTTAGGGACTATGTCCTTTCCTGCCTCCAAATCTCCT--CCCCAGCTGGGGTTGG--GGGAGTCCTCAGTGGCCCTGT--TGACTGGTGCTGAG
s panTro5.chr6             30410879 327 + 175400573 CAGTACGCTCTGGGGCCCCTAGAGAAACTCTGTGGGTCTCACTCATGAGCCGACGCACTTTTCCCTCCTGGACAAAA---TCTGTCACCTCTTCCAGGAAGTTTTGCTTGATTAATGTCATCTAAGCCTGACCAGCCCTCTCTTCAGCACCCCACTGTTCAGTCTAAAATATCTATATGTACCCCACCCCTGCCATGTAAGACCGTATCCTGTTTCCTCAGCAAAACTGTGTGACGTCAGTGCTTAGGGACCATGTCCTTTCCTGCCTCCAAATCTCCT--CCCCAGCTGGGGTTGG--GGGAGTCCTCAGTGGCCCTGT--TGAATGGTGCTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30645112 327 + 173848474 CAGTACGCTCTGGGGCCCCTAGAGAAACTCTGTGGGTCTCACTCATGAGCCGACGCACTTTTCCCTCCTGGACAAAA---TCTGTCACCTCTTCCAGGAAGTTTTGCTTGATTAATGTCATCTAAGCCTGACCAGCCCTCTCTTCAGCACCCCACTGTTCAGTCTAAAATATCTATATGTACCCCACCCCTGCCATGTAAGACCGTATTCTGTTTCCTCAGCAAAATTGTGTGACGTCAGTGCTTAGGGACCATGTCCTTTCCTGCCTCCAAATCTCCT--CCCCAGCTGGGGTTGG--GGGAGTCCTCAGTGGCCCTGT--TGAATGGTGCTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     353151 327 +   2037526 CAGTACGCTCTGGGGCCCCTAGAGAAACTCTGTGGGTCTCACTCATGAGCCGACGCACTTTTCCCTCCTGGACAAAA---TCTGTCACCTCTTCCAGGAAGTTTTGCTTGATTAATGTCATCTAAGCCTGACCAGCCCTCTCTTCAGCACCCCACTGTTCAGTCTAAAATATCTATATGTACCCCACCCCTGCCATGTAAGACTGTATCCTGTTTCCTCAGCAAAATTGTGTGACGTCTGTGCTTAGGGACCATGTCCTTTCCTGCCTCCAAATCTCCT--CCCCAGCTGGGGTTGG--GGGAGTCCTCAGTGGCCCTGT--TGACTGGTGCTGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75016145 325 + 122973662 CAGTACGCTCTGGGGCCCCTGGAGAAA--CTGTGGGTCTCACTCATGAGCCAACGCACTTTTCCCTCCTGGACAAAA---TCtgtcacctcttccaggaagttttgcctgattaatgtcatctaagcctgaccagtcctctcttcagcaccccactgttcagtctaaaatatctatatgtaccccacccctgccatgtaagactgcatcctgtttcctcagcaaaactgtgtgacatctgtgcttagggaccatgtcctTTCCTGCCTCCAAATCTCCT--CCCCAGCTGGGGTTGG--GGGAGTCCTCAGTGGCCCTGT--TGACTGGTGCTGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30906352 328 + 172585720 CAGTACACTCTGGGGCCCCTGGAGAAACTCTGTGGGGCTCACTCATGAGCTGGCACACTTTTCCCTCCTGGACAAAA-TCTCTGTCACCTCTTCCAGTAAGTTTTGCTTGATTAATGTCATCTAAGCCTGACCAGTCCTCTCTTCAGCACCCCACTGTTCAGTCTAAAATACCTATGTGTCCCCCACCCC-GCCACATAAGACTGTATCCTGTTTCCTCAGCAAAACTGTGTGACATCTGCGCTTAGGGACCATGTCCTCTCCTGCCTCCAAATCTCCT--CCCCAGTTGGGGTGAG--GGGAGTCCTCAGTGGCCCTGT--TGACTGGTGCTGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30195895 328 - 170955103 CAGTACAATCTGGGGCCCCTGGAGAAACTCTGTGGGGCTCACTCATGAGCTGGCACACTTTTCCCTCCTGGACAAAA-TCTCTGTCACCTCTTCCAGTAAGTTTTGCTTGATTAATGTCATCTAAGCCTGATCAATCCTCTCTTCAGCACCCCACTGTTCAGTCTAAAATACCTATGTGTCCCCCACCCC-GCCACATAAGACTGTATCCTGTTTCCTCAGCAAAACTGTGTGACATCTGCGTTTAGGGACCATGTCCTTTCCTGCCTCCAAATCTCCT--CCCCAGTTGGGGTGAG--GGGAGTCCTCAGTGGCCCTGT--TGACTGGTGCTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     444796 328 +   1495729 CAGTACACTCTGGGGCCCCTGGAGAAACTCTGTGGGGCTCACTCATGAGCTGGCACACTTTTCCCTCCTGGACAAAA-TCTCTGTCACCTCTTCCAGTAAGTTTTGCTTGATTAATGTCATCTAAGCCTGACCAGTCCTCTCTTCAGCACCCCACTGTTCAGTCTAAAATACCTATGTGTCCCCCACCCC-GCCACATAAGACTGTATCCTGTTTCCTCAGCAAAACTGTGTGACATCTGCGCTTAGGGACCATGTCCTCTCCTGCCTCCAAATCTCCT--CCCCAGTTGGGGTGAG--GGGAGTCCTCAGTGGCCCTGT--TGACTGGTGCTGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     548403 328 -    863181 CAGTACAATCTGGGGCCCCTGGAGAAACTCTGTGTGGCTCACTCATGAGCTGGCACACTTTTCCCTCCTGGACAAAA-TCTCTGTCACCTCTTCCAGTAAGTTTTGCTTGATTAATGTCATCTAAGCCTGACCAGTCCTCTCTTCAGCACCCCACTGTTCAGTCTAAAATACCTATGTGTCCCCCACCCC-GCCACATAAGACTGTATCCTGTTTCCTCAGCAAAACTGTGTGACATCTGTGCTTAGGGACCATGTCCTTTCCTGCCTCCAAATCTCCT--CCCCAGTTGGGGTGAG--GGGAGTCCTCAGTGGCCCTGT--TGACTGGTGCTGGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29695121 328 -  71996105 CAGTACCATTTGGGGCCCCTGGAGAAACTCTGTGGGGCTCACTCATGAGCTGGCACACTTTTTCCTCCTGGACAAAA-TCTCTGTCACCTCTTCCAGGAAGTTTTGCTTGATTAATGTCATCTAAGCCTGACCAGTCCTCTCTTCAGCACCCCACTGTTCAATCTAAAATACCTATGTGTCCCCCACCCC-GCCACATAAGACTGTATCCTGTTTCCTCAGCAAAACTGTGTGACATCTGCGCTTAGGGACCATGTCCTTTCCTGCCTCCAAATCTCCT--CCCCAGTTGGGGTGAG--GGGAGTCCTCAGTGGCCCTGT--TGACTGGTGCTGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     430644 328 -    735854 CAGTACAATCTGGGGCCCCTGGAGAAACTCTGTGGGGCTCACTCATGAGCTGGCACACTTTTCCCTCCTGGACAAAA-TCTCTGTCACCTCTTCCAGTAAGTTTTGCTTGGTTAATGTCATCTAAGCCTGACCAGTCCTCTCTTCAGCACCCCACTGTTCAGTCTAAAATACCTATGTGTCCCCCACCCC-GCCACATAAGACTGTATCCTGTTTCCTCAGCAAAACTGTGTGACATCTGTGCTTAGGGACCATGTCCTTTCCTGCCTCCAAATCTCCT--CCCCAGTTGGGGTGAG--GGGAGTCCTCAGTGGCCCTGT--TGACTGGTGCTGGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     337657 328 -   1829203 CAGTACACTCTGGGGCCCCTGGAGAAACTCTGTGGGGCTCACTTATAAGCCGGCGCACTTTTCCCTCCTGGACAAAA-TCTCTGTCACCTCTTCCAGGAAGTTTTGCTTGATTAATGTCATCTAAGCCTGACCAGTCCTCTCTTCAGCACCCCACTGTTCAGTCTAAAATACCTATGTGTACCCCACCCC-GCCACATAAGACTGTATCCTGTTTCCTCAGCAAAACTGTGTGACATCTGTGCTTAGAGACTATGTCCTTTCCTGCCTCCAAATCTCCT--CCCCAGCTGGGGTGAG--GGGAGCCCTCAGTGGCCCTGT--TGACTGGTGCTGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30526020 319 + 171630274 CAGTATGCTCTGGGGCCCCTGGAGAAACTCTGTGGGTCTCATTCACGAGCCAATGTACTTTTCTTTCCTGGACAAAA-TTTCTGTCACCTCTTCCAGGAACGTTTGCTTGATGAATGTCATCTAAGCCTGTCCAGGCCTCCCTTCAGCACTCCACTGTTAGGCCTAAAATATCTATGTGTACCCCACACCTG----------CTGTATCCTGTTTCCTCAGCAAAACTATGTGACGTCTGTGCTTAGGGACCATGTCCTTTCCTGCCTCCAAATTTCTT--CCCCAGTTGGGGTCAA--GGGAGTCCTCAGTGGCCCTGG--TGACTGGTGCTGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           329441 329 +    515838 CAGTATGCTCTGGGGTCCCTGGAGAAACTCTGTGGATCTCATTCATGAGCCAACGCACTTTTCTCTCCTGGACAAAA-TCTCGGTCACCTCTTCCAGGAACTTTTGCTTGATTAATGTCATCTAAGCCTGTTCAGTCCTCTATTCAGCACCCCACTGTTAGGTCTAAAATATCTATGTGTACCCCACCTCTGCCACATAAGACTGTATCCTGTTTCCTCAGCAAAACTGTGTGACGTCTGTGCTTAGGGACCATGTCCTTTCCTGCCTCCAAATTTCCT--CCCCAGCTGGGGTCAG--GGGAGTCCTCAGTGGCCCTGT--TGACTGGTGCTGGG
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496901v1     144160 327 -    486031 CAGTATGCTCTGGGGTCCCTGGAGAAACTCTGTGGGTCTCATTCACGAGCCAACGCACTTTTCTGTCCTGGACAAAA-TCT--GTCACCTCTTCCAGGAACTTTTGCTTGATGAATGTCATCTAAGCCTGTCCAGTCCTCTCTTCAGCACCCCACTGTTAGGTCTAAAATATATATGTGTACCCCACGCCTGCCACATAAGACTGTATCCTGTTTCCTCAGCAAAACTGTGTGACATCTGTGCTTAGGGACCATGTCCTTTCCTGCCTCCAAATTTCTT--CCCCAGCTGGGGTCAG--GGGAGTCCTCAGTGGCCCTGT--TGACTGGTGCTGGG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           386517 303 +  18854210 CAGCATATTCCAGTGACCCTGGAGGAACTTTACAGGTCTCACTCACAAGCCAACACACTTTTCCCTCCTAGGAAAATCTCTGTGTCACCTCTTCCAGAAAGCTTTACTAAATTAATGTTGTACAAGCCTGATCAAT---------AGTACCCCATTATTAGGTCTAAAATATCTATGTGAACCCCATCCCTGCCATATAAGACTATACCCTACTTCCTCAGGGTA----------------------GGACCATGTCCTCTCCTGCCTCCAGCTCTCCCTACCCACACTGGGGTCTGCTTGCAGTTCTTAGTTCCCCAGT--TGACTGATGCTGGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58135040 236 -  94987271 CAGTAAGTCTTGGGACAAAGAAAGGGAGCCTGTGTATCCCATT-------------ACT-----------AACATAA-----TGTCACCCTTCTCAATGA------------TAATACGAGC---ACTCAGTCAGCCC-CTCTTCAATACCCC--------------CATTACTCTGTGTACCCAA----------GTGGGACTCCACTCTGCTTCTTTGGTGAGGC--TGGAATGTGTGTACTCAGGGAACACATCCTGTCCTG-------------T-----AAGCTGGAACTGC--CTGAGTCCCCAAT--CCCTCT--AGGTAAGTG-----
i mm10.chr17               C 0 C 0
s canFam3.chr35            26393172 151 +  26524999 CTGGGTGCTGCAGGGTCCCCTGACAAA------------------------------------------GGACACAC----------------------------------------------GTGCCTGACC--CCTGCCCTTGGGGAAACTACCG--------AGAGT-----------CCCCTCCCC------------------------------------------------------------------CCTCTGCGGCTTCTAAACTTCCC--TGTGGGTATGGGCCAG--AG------TCCATGACCCTGTGCTGACTCACGTTGGG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               429793 1486 + 123392446 I
e proCoq1.NW_012149775v1     393511 989 -   1411461 I
e cebCap1.NW_016107755v1     959920   0 -   1771730 C

a score=2256459.000000
s hg38.chr6_GL000254v2_alt  1541372 222 +   4827813 CTGGGGGCAGCCATGCACACTGAGGGCCTGGAGG-GGT-CCTTGGA-CTT-GGCTGTCTCTAGCTTACTGTTTCCCTCTCCCTAGGCCTAATGACTCAC-------------------CACTGGCC------------------------------------------------------CTGAC--CCCACTACTCCTCCACTGCCCACTTCCTCAACATACACA------------GTTCCCCAGAAAATCAGAACCATTTGATCAG----TTCCCCC-C--AACCCCAACTCTAATCAAGTACATAATGTGCTGCCT
s panTro5.chr6             30411206 222 + 175400573 CTGGGGGCAGCCATGCACACTGAGGGCCTGGAGG-GGT-CCTTGGA-CTT-GGCTGTCTCTAGCTTACTGTTTCCCTCTCCCTAAGCCTAATGACTCAC-------------------CACTGGCC------------------------------------------------------CTGAC--CCCACTACTCCTCCACTGCCCATTTCCTCAACATACACA------------GTTCCCCAGAAAATCAGAACCATTTGATCAG----TTCCCCC-C--AACCCCATCTCTAATCAAGTACATAATGTGCTGCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30645439 222 + 173848474 CTGGGGGCAGCCATGCACACTGAGGGCCTGGAGG-GGT-CCTTGGA-CTT-GGCTGTCTCTAGCTTACTGTTTCCCTCTCCCTAGGCCTAATGACTCAC-------------------CACTGGCC------------------------------------------------------CTGAC--CCCACTACTCCTCCACTGCCCATTTCCTCAACATACACA------------GTTCCCCAGAAAATCAGAACCATTTGATCAG----TTCCCCC-C--AACCCCATCTCTAATCAAGTACATAATGTGCTGCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     353478 222 +   2037526 CTGGGGGCAGCCATGCACACTGAGGGCCTGGAGG-GGT-CCTTGGA-CTT-GGCTGTCTCTAGTTTACTGTTTCCCTCTCCCTAGGCCTAATGACTCAC-------------------CACTGGCC------------------------------------------------------CTGAC--CCCACTACTCCTCCACTGCCCACTTCCTCAACATACACA------------GTTCCCCAGAAAATCAGAACCATTTGATCAG----TTCCCCC-C--AACCCCATCTCTAATCAAGTACATAATGTGCTGCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75016470 222 + 122973662 TTGGGGGCAGCCATGCACACTGAGGGCCTGAAGG-GGT-CCTTGGA-CTT-AGCCATCTCTAGCTTACTCTCTCCCTCTCCCTGGGCCTAATGACTCAC-------------------CACTGGCC------------------------------------------------------CTGAC--CCCACTACTCCTCCACTGCCCACTTCCTCAACATACACA------------GTTCCCCAGAAAATCAGAACCATTTGATCAG----TTCCCCC-C--AACCCCATCTCTAATCAAGTACATAATGTGCTGCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30906680 224 + 172585720 CTGGGGGCAGCCATGCACACTGAGGGCCTGGAGG-GGTCCCTTGGA-CTT-AGCCATCTCTAGCTTACTGTCTCCCTCTCCCCAGGCCTAATGACGCAC-------------------CACTGGCC------------------------------------------------------CTGAC--CCCACTACTCCTCCACTGCCCACTTCCTCAACATACACA------------GTTCCCCAGAAAATGAGAACCATTTGATCAG----TTCCCCGCC--AACCCCATCTCTAATCAAGCACATAACGTGCTGCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30196223 224 - 170955103 CTGGGGGCAGCCATGCACACTGAGGGCCTGGAGG-GGTCCCTTGGA-CTT-AGCCATCTCTAGCTTACTGTCTCCCTCTCCCCAGGCCTAATGACGCAC-------------------CACTGGCC------------------------------------------------------CTGAC--CCCATTACTCCTCCACTGCCCACTTCCTCAACATACACA------------GTTCCCCAGAAAATCAGAACCATTTGATCAG----TCCCCCGCC--AACCCCATCTCTAATCAAGCACATAACATGCTGCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     445124 224 +   1495729 CTGGGGGCAGCCATGCACACTGAGGGCCTGGAGG-GGTCCCTTGGA-CTT-AGCCATCTCTAGCTTACTGTCTCCCTCTCCCCAGGCCTAATGACGCAC-------------------CACTGGCC------------------------------------------------------CTGAC--CCCACTACTCCTCTACTGCCCACTTCCTCAACATACACA------------GTTCCCCAGAAAATTAGAACCATTTGATCAG----TTCCCCGCC--AACCCCATCTCTAATCAAGCACATAACGTGCTGCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     548731 224 -    863181 CTGGGGGCAGCCATGCACACTGAGGGCCTGGAGG-GGTCCCCTGGA-CTT-AGCCATCTCTAGCTTACTGTCTCCCTCTCCCCAGGCCTAATGACGCAC-------------------CACTGGCC------------------------------------------------------CTGAC--CCCACTACTCCTCCACTGCCCACTTCCTCAACATACACA------------GTTCCCCAGAAAATCAGAACCATTTGATCGG----TTCTCCCAC--AACCCCATCTCTAATCAAGCACATAACGTGCTGCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29695449 223 -  71996105 CTGGGGGCAGCCATGCACACTGAGGGCCTGGAGG-GGT-CCTTGGA-CTT-AGCCATCTCTAGCTTACTCTCTCCCTCTCCCCAGGCCTATTGACGCAC-------------------CACTGGCC------------------------------------------------------CTGAC--CCCACTACTCCTCCACTGCCCACTTCCTCAACATACACA------------GTTCCCCAGAAAATCAGAACCATTTGATCGG----TTCCCCCAC--AACCCCATCTCTAATCAAGCACATAACGTGCTGCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     430972 224 -    735854 CTGGGGGCAGCCATGCACACTGAGGGCCTGGAGG-GGTCCCCTGGA-CTT-AGCCATCTCTAGCTTACTGTCTCCCTCTCCCCAGGCCTAATGACGCAC-------------------CACTGGCC------------------------------------------------------CTGAC--CCCACTACTCCTCCACTGCCGACTTCCTCAACATACACA------------GTTCCCCAGAAAATCAGAACCATTTGATCGG----TTCCCCCAC--AACCCCATCTCTAATCAAGCACATAACGTGCTGCCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     337985 223 -   1829203 CTGAGGGCAGCCATGCACACTGAGGGCCTGGAGG-GGT-CCTTGGA-CTT-AGCCGTCTCTAGCTTACTCTCTCCCTCTCCCCAGGCCTAATGACTCAC-------------------TACTGGCC------------------------------------------------------CTGAC--CCCACTACTCTTCCACTGCCCACTTCCTCAACATACACA------------GTTCCCCAGAAAATCAGAACCATTTGATCAG----TTCCCCCGC--AACCCCATCTCTAATCAAGCACATAACGTGCTGTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30526339 237 + 171630274 CTGGGGACAGCCATGCACACTGAAGGCCTGGAGG-GGT-CGTTGGA-CTT-AGCCGTCTCTGGCTTACTCTCACCCTCTCCCTGGGCCTCATGACTCCC-------------------CGCTGGGC------------------------------------------------------CTGAC--CCCACTACTCCTCCACTGCCCACTTCCCCAACATACACGTTTTTCCCAGATTTTCCCCAGAAAATCAGAACCATTTTATCAG-GTTTTTCCCT-C--AACCCCATCTCTAATCAAGCACATAATGTGCTGCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           329770 218 +    515838 CTGGGGGCAGCCGTGCACACTGAGGGCCTGGAGG-GGT-CGTTGGA-CTT-AGCCGTCTCTGGCTTACTTTCTCCTTCTCC---------------------------------------CTGGGC------------------------------------------------------CTGAC--CCCACTACTCCTCCACTGCCCACATCCCCAACATACACATTTTTCCCAGATTTTCCCCAGAAAATCAGAACCATTTTATCAG-TTTTCCCCCCGC--AACCCCATCTCCAATCAGGCACATAATGTGCTGCCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     959920 238 -   1771730 CTGGGGGCAGTTGTGCACACTGAGAGCCTGGAGG-GGT-CATTGGA-CTT-AGCTGTCTCTGGCTTACTCTCTCCCTCTCGCTGGGCCTCATGACTCAC-------------------CACTGGGC------------------------------------------------------CTGAC--CCCACTACTCCTCCACCGCCCACTTTCCCAACATACACATTTTTCCCAGGTTTTCCCCAGAAAATCAGAACCATTTTATCAG-TTTTTCCCTCCC--AACCCCATATCTGATCAAGCACATAACGTGCTGCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     144487 238 -    486031 CTGGGGGCAGCCGTGCACACTGAGGGCCTGGAGG-GGT-CGTTGGA-CTT-AGCCGTCTCTGGCTTACTCTCTCCCTCTCCCTGGGCCTCATGACTCCC-------------------CGCTGGGC------------------------------------------------------CTGAC--CCCACTACTCCTCCACTGCCCACTTCCCCAACATACACATTTTTCCCAGATTTTCCCCAGAAAATCAGAACCATTTTATCCG-TTTTTTCCCCCC--AACCCCATCTCTAATCAAGCACATAATGTGCTGCCT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           386820 301 +  18854210 TTGGAGGCATCCATGCACAAC-AAGGCCTAGAGA-TGCTCCCTAGA-CTTGGGCTGTCTCTGCCTTTATCTTTCTTTCTCCTTGGACCTAATTACTCACTAATTAGCCAATATGCCTACACTGCCCACCTTCCCAAGAAACAGACTCCCCCAGAAAGTTGGAACCCAATTATGATTCCAACTAACTACCCAATATGCCTCCACTGCCCACCTTCCCAACAGA----------------GTCCCCCAGAGAGTTGGAACCACCTTATCAGTTTTTTCCCCCTCTGATGTTCTCCTCTAATCAAGCAGACAACTTGCTGCCG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58135276 133 -  94987271 ---AGGGTGCCCGTGTACACC-AGGATCTAGAGG-TACTTTGTGGA-CCTGAGCTCTCTCTAGCTTTATCTTTCAC--------AACCTGGCTAGACAC-------------------TGCCAGGC------------------------------------------------------GTGAC--CCCAGAATCTCTCCACTGCCCA-----------------------------TTTTCCCAACACA---------------------------------------------------------------------
i mm10.chr17               C 0 I 86
s canFam3.chr35            26393323 204 +  26524999 CTGGAGGTATCCACACAGCATGAGGGCTCACAGGCAGT-CCTCGAACCCT-TGTCGTCTCCTACATGC-CTTTCCCCCTTTCCCAGTCTAAT----CAC-------------------TGATGGGC------------------------------------------------------CTGAC--CCCCACATCCCTCTG----ACAGTTCCCTGATGCAGACA------------CTCCCCTGGAAAACTGGACACACC-----------TTC-----C--TGACCCACCCCTACTCCAGCACATAGCGTGCAGCCT
i canFam3.chr35            C 0 I 18
e micMur3.chr6               429793 1486 + 123392446 I
e proCoq1.NW_012149775v1     393511 989 -   1411461 I

a score=806505.000000
s hg38.chr6_GL000254v2_alt  1541594 84 +   4827813 GTTTTCTAACTAcagttgtccct---tggtatcagtgggtgatgggttccaggatc-tccctccccaaggataccaaaatccaaggat
s panTro5.chr6             30411428 84 + 175400573 GTTTTCTAACTAcagttgtccct---tggtatcagtgggtgatgggttccaggatc-tccctccccaaggataccaaaatccaaggat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30645661 84 + 173848474 GTTTTCTAACTAcagttgtccct---tggtatcagtgggtgatgggttccaggatc-tccctccccaaggataccaaaatccaaggat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     353700 84 +   2037526 GTTTTCTAACTAcagttgtccct---tggtatcagtgggtgatgggttccaggatc-tccctccccaaggataccaaaatccaaggac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75016692 84 + 122973662 GTTTTCTAACTAcagttgtccct---tggtatcagtgggtgatgagttccaggatc-tccctccccaaggataccaaaatccaaggat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30906904 83 + 172585720 GTTTCCCAACTAcagttgtccct---cggtatcagtgggttatggattccaggatc--ccctccccaaggataccaaaatccaaggat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30196447 83 - 170955103 GTTTCCCAACTAcagttgtccct---cggtatcagtgggttatggattccaggatc--ccctccccaaggatgccaaaatccaaggat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     445348 83 +   1495729 GTTTCCCAACTAcagttgtccct---cggtatcagtgcgttatggattccagaatc--ccctccccaaggataccaaaatccaaggat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     548955 82 -    863181 GTTTCCCACCTAcagttgtccct---cggtatcagtgggttatgg-ttccaggatc--ccctccccaaggataccaaaatccaaggat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29695672 82 -  71996105 GTTTCCCAACTAcagttgtccct---cggtatcagcgggttatgg-ttccaggatc--ccctccccaaggataccaaaatccaaggat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     431196 82 -    735854 GTTTCCCAACTAcagttgtccct---cggtatcagtgggttatgg-ttccaggatc--ccctccccaaggataccaaaatccaaggat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     338208 83 -   1829203 GTTCCCCAACTAcagttgtccct---tggtatcagtgggttatgggttccaggatc--ccctccccaaggataccaaaatccaagcat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30526576 77 + 171630274 -------AACTAcagtggtccct---tgttatcagtgggtgatgggttccacaatc-cccctctccaggaacacccaaatccaaggat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           329988 77 +    515838 -------AACTAcagttgtccct---tggtgtcagtgggtgatgggttccacaatc-cccctccccaaggacaccctaatccaaggat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     960158 77 -   1771730 -------AACTAcagttgtccct---tggtgtcagtgggtgatgggttccacaatc-cccctccccaaggacaccctaatccaaggat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     144725 77 -    486031 -------AACTAcagttgtccct---tggtatcagtgggtgatggattccacaatt-cccctctccaaggacacccaaatccaaggat
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           387121 88 +  18854210 GGTTAATAACTAcagttgcccctcggtggtatcaataggcaattgattccaggaccttctttccctaaggatacaaaaatctgaggat
i otoGar3.GL873550         C 0 I 565
e micMur3.chr6               429793 1486 + 123392446 I
e mm10.chr17               58135409 86 -  94987271 I
e proCoq1.NW_012149775v1     393511 989 -   1411461 I
e canFam3.chr35            26393527 18 +  26524999 I

a score=561361.000000
s hg38.chr6_GL000254v2_alt  1541678 58 +   4827813 gctcaag-ttcttatgtaaaatggaataatagttacataaaatctactatatactttaa
s panTro5.chr6             30411512 58 + 175400573 gctcaag-ttcttatgtaaaatggaataatagttacataaaatctactatatactttaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30645745 58 + 173848474 gctcaag-ttcttatgtaaaatggaataatagttacataaaatctactatatactttaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     353784 58 +   2037526 gctcaag-ttcttatgtaaaatggaataatagttacataaaatctactatatactttaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75016776 58 + 122973662 gctgaag-ttcttatgtaaaatggaataatagtcacataaaatctaccatatactttaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30906987 59 + 172585720 gctcaagtttcttacgtaaaatggaataatatttacatataatctactatatactttaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30196530 59 - 170955103 gctcaagtttcttacgtaaaatggaataatatttacatataatctactatatactttaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     445431 59 +   1495729 gctcaagtttcttacgtaaaatggaataatatttacatataatctactatatactttaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     549037 59 -    863181 gctcaagtttcttacgtaaaatggaataatatttacatataatctactatatactttaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29695754 59 -  71996105 gctcaagtttcttacgtaaaatggaataatatttacatatcatctactatatactttaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     431278 59 -    735854 gctcaagtttcttacgtaaaatggaataatatttacatataatctactatatactttaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     338291 59 -   1829203 gctcaagtttcttatgtaaaatggaataatatttacatataatctactatatactttaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30526653 59 + 171630274 gctcaagtttcttatataaaatggaacaatatttacatataatccactatatactttaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           330065 59 +    515838 gctcaagtttcttatataaaatggaatcatatttacatataatccaccatatactttaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     960235 59 -   1771730 gctcaagtttcttatataaaatggaaatatatttacatataatccactatatactttaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     144802 59 -    486031 gctcaagtttcttatataaaatggaacaatatttacatataatccactatatactttaa
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               429793 1486 + 123392446 I
e mm10.chr17               58135409 86 -  94987271 I
e proCoq1.NW_012149775v1     393511 989 -   1411461 I
e canFam3.chr35            26393527 18 +  26524999 I
e otoGar3.GL873550           387209 565 +  18854210 I

a score=1300563.000000
s hg38.chr6_GL000254v2_alt  1541736 122 +   4827813 attatcactagattacttataatgcctaatataatgtaaatgctata--------taaatagctgttacactgaattgtttagagaataatgacaag--aaaaaaaatctgtacatgttcagtagagacgct
s panTro5.chr6             30411570 122 + 175400573 attatctctagattacttataatgcctaatataatgtaaatgctgta--------taaatagctgttacactgaattgtttagagaataatgacaag--aaaaaaaatctgtacatgttcagtagagatgct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30645803 121 + 173848474 attatctctagattacttataatgcctaatataatgtaaatgctgta--------taaatagctgttacactgaattgtttagagaataatgacaag---aaaaaaatctgtacatgttcagtagagatgct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     353842 122 +   2037526 attatctctagattacttataatgcctaatataatgtaaatgctata--------taaatagctgttacactgaattgtttagagaataatgacaag--aaaaaaaatctgtacatgttcaatagagatgct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75016834 122 + 122973662 attatctctaggttacttataatgcctaatataatgtaaatgctata--------taaatagctgttacactgaattgtttagagaataatgacaag--aaaaaaaatctgtatgtgttcagtagagatgct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30907046 122 + 172585720 attatctctagattacttacaatgcctaatataatgtaaatgctata--------taaatagctgctacactgcattgtttagagaataatgacaag--aaaaaaaatctgtatatgttcagtagagatgct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30196589 123 - 170955103 attatctctagattacttacaatgcctaatataatgtaaatgctata--------taaatagctgttacactgcattgtttagagaataatgacaag-aaaaaaaaatctgtatatgttcagtagagatgct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     445490 122 +   1495729 attatctctagattacttacaatgcctaatataatgtaaatgctata--------taaatagctgctacactgcattgtttagagaataatgacaag--aaaaaaaatctgtgtatgttcagtagagatgct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     549096 123 -    863181 attatctctagattacttacaatgcctaatataatgtaaatgctata--------taaatagctgttacactgcattgtttagagaataatgataag-aaaaaaaaatctgtatatgttcagtagagatgct
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29695813 122 -  71996105 attatctctagattacttacaatgcctaatataatgtaaatgctata--------taaatagctgttatactgcattgtgtagagaataatgataag--aaaaaaaatctgtatatgttcagtagagatgct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     431337 124 -    735854 attatctctagattacttacaatgcctaatataatgtaaatgctata--------taaatagctgttacattgcattgtttagagaataatgataagaaaaaaaaaatctgtatatgttcagtagagatgct
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     338350 122 -   1829203 attatctctagattacttacaatgcctaatataatgtaaatgctaca--------taaatagctgttacactgcattgtttagagaataatgacaag--aaaaaaaatctgtatatgttcagaagagatgct
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30526712 124 + 171630274 attatctctagattacttataatgcccaatataatgtaaatgctata--------taaagagctgtaacattgtattgtttagagaataatgacaagatttaaaaaatctgtatatgttcagtagagatgct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           330124 124 +    515838 attatctctagattacttataatgcctaatacaacgtaaatgctata--------taaatagctgttacattgtattgtttagagaataatgacaagataaaaaaaatctgtttatgttcagtagagatgct
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     960294 124 -   1771730 attatctctagattacttataatgcctaatataatgtaaatgctata--------taaatagctgttacatcgtattgtttagagaataatgacaagatttaaaaaatctgtatatattcagtagagatgct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     144861 124 -    486031 attatctctagactacttataatgcccaatataatgtaaatgctata--------taaagagctgttacattgtattgtttagagaataatgacaagataaaaaaaatctgtatatgttaagtagagatgct
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           387774 123 +  18854210 atcatttccagattgctcataatacctagtacagtgaaaatgctacacatgtatgtaaatacttgctatattata-tgtttagagaataatgacaag--aaggaa----tacatatgttcaatagagatg--
i otoGar3.GL873550         I 565 C 0
e micMur3.chr6               429793 1486 + 123392446 I
e mm10.chr17               58135409  86 -  94987271 I
e proCoq1.NW_012149775v1     393511 989 -   1411461 I
e canFam3.chr35            26393527  18 +  26524999 I

a score=960289.000000
s hg38.chr6_GL000254v2_alt  1541858 96 +   4827813 ttttcttttttctgaatatttctgatccatggttgggtaaattcgccgctacggaacccacagatatggaggAGGTCCCACTGTACTGGCAACCAT
s panTro5.chr6             30411692 96 + 175400573 ttttcttttttctgaatatttctgatccatggttggggaaattcgccggtacggaacccacagatatggaggAGGTCCCACTGTACTGGCAACCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30645924 96 + 173848474 ttttcttttttctgaatatttctgatccatggttgggtaaattcgccggtacggaacccacagatagggaggAGGTCCCACTGTACTGGCAACCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     353964 95 +   2037526 ttttcttttttctgaatatttctgatccatggtt-ggtaaattcaccggtacggaacccacagatatggaggAGGTCCCACTGTACTGGCAACCAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75016956 96 + 122973662 ttttcttttttctgaatatttctgatccatggttgggtaaattcaccgttacagaatccacagatatggaggAGGTCCCACTGTATGGGCAACCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30907168 96 + 172585720 tttccttttttctgagtatttctgatccatggttgggtaaatccaccggtgtggagcccacagatatggagggGGTCCCACTATACTGGCAACCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30196712 87 - 170955103 ttttcttttttctgagtatttctgatccatggttgggtaaatccactggtgtggagcccacagatatggaggggg---------actgGCAACCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     445612 96 +   1495729 tttccttttttctgagtatttctgatccatggttgggtaaatccaccagtgtggagcccacagatatggagggGGTCCCACTATACTGGCAACCAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     549219 96 -    863181 ttttcttttttctgagtatttctgatccatggttgggtaaatccaccggtgtggagcccacagatatgaagggGGTCCCACTATACTGGCAACCAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29695935 96 -  71996105 ttttcttttttctgagtatttctgatccatggttgggtaaatccaccggtgtggagcccacagatatggagggGGTCCCACTATACTGGCAACCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     431461 96 -    735854 ttttcttttttctgagtatttctgacccatggttgggtaaatccaccggtgtggagcccacagatatggagggGGTCCCACTATACTGGCAACCAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     338472 96 -   1829203 ttttcttttttctgagtatttctgatccatggttgggtaaatccactggtgtggagcccacagacatcgagggGGTCCCACTATACTGGCAACCAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30526836 96 + 171630274 ttttcttttttctgaatatttctgattcatggttgggtaaatccacaggtgcggagcccacagatatgaaggaggtcccactgTGCTGGCAACCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           330248 96 +    515838 ttttctcttttctgaatatttctgatcgatggttgggtaaacccacaggtgcagagcccacagatatggaggAGGTCCCACTGGGCTGGCAACCAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     960418 96 -   1771730 ttttcttttttctgaatatttctgatccatggttgggtaaacccacaggtgcagagcccacagatatgcaggaggtcccactgTGCTGGCAACTAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     144985 96 -    486031 ttttcttttttctgaatatttctgatctatggttggataaacccacaggtgcggagcccacagatatggaggAGGTCCCACTGTGCTGGCAACCAT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           387897 93 +  18854210 ttttcctctttctgaacgtttccagtctgcagttggttgaatgcatgggtgcagagcccacggatatgaaggg---tcaacCTCACAGGCAACCAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58135495 20 -  94987271 TCTTCTTTACTTCGAATAGT----------------------------------------------------------------------------
i mm10.chr17               I 86 C 0
e micMur3.chr6               429793 1486 + 123392446 I
e proCoq1.NW_012149775v1     393511 989 -   1411461 I
e canFam3.chr35            26393527 18 +  26524999 I

a score=711753.000000
s hg38.chr6_GL000254v2_alt  1541954 71 +   4827813 GATCCTGGGCCTGGACCTCACTACATACAGTGCCAT-CAGAAT-TGG--CAGACCTGCCTTAGCTGTTTTCTAGC
s panTro5.chr6             30411788 71 + 175400573 GATCCTGGGCCTGGACCTCACTACATACAGCGCCAT-CAGAAT-TGG--CAGGCCTGCCTTAGCTGTTTTCTAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30646020 71 + 173848474 GATCCTGGGCCTGGACCTCACTACATACAGCGCCAT-CAGAAT-TGG--CAGGCCTGCCTTAGCTGTTTTCTAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     354059 71 +   2037526 GATCCTGGGCCTGGACCTCACTACATACAGCGCCAT-CAGAAT-TGG--CAGGCCTGCCTTAGCTGTTTTCTAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75017052 71 + 122973662 GATCCTGGGCCTGGTCCTCACTGCATACAGCGCCAT-CAGAAT-TGG--CAGGTCTGCCTTAGCTGTTCTCCAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30907264 71 + 172585720 TATCCTGGGCCTGGGCCTCACTACATACAGCGCCAT-CTGAAC-TGG--CAGGCCTGCCTTAGCTGTTCTCTAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30196799 71 - 170955103 TATCCTGGGACTGGGCCTCACTACATACAGCGCCAT-CAGAAC-TGG--CAGGCCTGCCTTAGCTGTTCTCTAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     445708 71 +   1495729 TATCCTGGGCCTGGGCCTCACTACATACAGCGCCAT-CAGAAC-TGG--CAGGTCTGCCTTAGCTGTTCTCTAGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     549315 71 -    863181 TATCCTGGGCCTGGGCCTCACTACATACAGCGCCAT-CTGAAC-TGG--CAGGCCTGCCTTAGCTGTTCTCTAGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29696031 71 -  71996105 TATGCTGGGCCTGGGCCTCACTACATACAGCGCCAT-CTGAAC-TGG--CAGGCCTGCCTTGGCTGTTCTCTAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     431557 71 -    735854 TATCCTGGGCCTGGGCCTCACTACATACAGTGCCAT-CTGAAC-TGG--CAGGCCTGCCTTAGCTGTTCTCTAGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     338568 71 -   1829203 TATCCTGGGACTGGGCCCCACTACATACAGTGCCAT-CAGAAC-TGG--CAGGCCTGCCTTAGCTGTTCTCCAGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30526932 71 + 171630274 GATCCTGGGTCTGGGTCTCACTAGGTACAGTGCCAT-CAGAGC-TGG--CAGGCCTGCCTTAGCCATTCCCTGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           330344 71 +    515838 GATCCTGGGTCTGGGCCTCACTACATACAGTACCAT-CAGAGC-TGG--CAGGCCTGCCTTAGCCGTTCCCTAGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     960514 71 -   1771730 GATCCTGGGTCTGGGCCTCACTAAGTACAGCGCCAT-CAGAGC-TGG--CAGGCCTGCCTTAGCCGTTCCCTAGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     145081 71 -    486031 GATCCTGGGTCTGGGCCTCACTACATACAGCGCCAT-CAGAGC-TGG--CAGGCCTCCCTTAGCCGTTCCCTAGT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           387990 69 +  18854210 GG-GCAGGGCCCAGGCCTCACTAGACAAGGCACTACAAAGAGC-TGA-TCAGGCCTACCTTGCCCCCCCACA---
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58135515 63 -  94987271 ------GGGCCCGAGTCTCACTAGGCA-GCCTCAAT-CAGAGC-CTGCTCAGAGCTGCTCAGGCCCCCTTCC---
i mm10.chr17               C 0 C 0
s canFam3.chr35            26393545 61 +  26524999 GGCCCTGGGTGCGGGGCTCAGCAGATACTGCATACC-CAGAATGCTG--CATGCCCTCATAGGC-----------
i canFam3.chr35            I 18 C 0
e micMur3.chr6               429793 1486 + 123392446 I
e proCoq1.NW_012149775v1     393511 989 -   1411461 I

a score=3591512.000000
s hg38.chr6_GL000254v2_alt  1542025 337 +   4827813 CCTTCCCTCTCAGTTCTTACCCTGGAGCCAGCTCCCTCCTTCTA-AACCCT---------CTCCACT--------CTCAGGCAACCT--------------------------------------TG--------TCTCTCTCTCTCTCTTT----------------GAAAGGAAGAATGAAGCCACACC-TTCTTCAGTCCCCTGGCAGAAGAGAACCAGCAGCTGG-ACATGGGCCCTGCCTTCAAGGTGACAGTCACAGAAAACggaagggactctagctgacatccaggcagcccacttgtctctc-agac----aagaaacaggcccaagactaca--cggctcagaaaga-------cagcacttgggct------a---aaacc--------------------caggtctgct-actgc--------------------------cagg----ctgACACCCATCCTCC-----------------------CTGTGAGCAGCGCC-T
s panTro5.chr6             30411859 337 + 175400573 CCTTCCCTCTCAGTTCTTACCCTGGAGCCAGCTCCCTCCTTCTA-AACCCT---------CTCCACT--------CTCAGGCAACCT--------------------------------------TG--------TCTCTCTCTCTCTCTTT----------------GAAAGGAAGAATGAAGCCACACC-TTCATCAGTCCCCTGGCAGAAGAGAACCAGCAGCTGG-ACATGGGCCCTGCCATCAAGGTGACAGTCACAGAAAACggaagggactctagctgacatccaggcagcccacttgtctctc-agac----aagaaacaggcccaagactaca--cggctcagaaaga-------cagcacttgggct------a---aaacc--------------------caggtctgct-actgc--------------------------cagg----ctgACGCCCATCCTCC-----------------------CTGTGAGCAGCGCC-T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30646091 337 + 173848474 CCTTCCCTCTCAGTTCTTACCCTGGAGCCAGCTCCCTCCTTCTA-AACCCT---------CTCCACT--------CTCAGGCAACCT--------------------------------------TG--------TCTCTCTCTCTCTCTTT----------------GAAAGGAAGAATGAAGCCACACC-TTCATCAGTCCCCTGGCAGAAGAGAACCAGCAGCTGG-ACATGGGCCCTGCCATCAAGGTGACAGTCACAGAAAACggaagggactctagctgacatccaggcagcccacttgtctctc-agac----aagaaacaggcccaagactaca--cggctcagaaaga-------cagcacttgggct------a---aaacc--------------------caggtctgct-actgc--------------------------cagg----ctgACGCCCATCCTCC-----------------------CTGTGAGCAGCGCC-T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     354130 337 +   2037526 CCTTCCCTCTCAGTTCTTACCCTGGAGCCAGCTCCCTCCTTCTA-AACTCT---------CTCTGCT--------CTCAGGCAACCT--------------------------------------TG--------TCTTTCTCTCTCTCTTT----------------GAAAGAAAGAATGAAGCCACACC-TTCTTCAGTCCCCTGGCAGAAGAGAACCAGCAGCTGG-ACATGGGCCCTGCCATCAAGGTGACAGTCACAGAAAACggaagggactctagctgacatccaggcagcccacttgtctctc-agac----aagaaacaggcccaagactaca--cggctcagaaaga-------cagcacttgggct------a---aaacc--------------------caggtctgct-actgc--------------------------cagg----ctgACGCCCATCCTCC-----------------------CTGTGAGCAGCGCC-T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75017123 357 + 122973662 CCTTCCCTCTCAGTTCTTACCCTGGAGCCAGCTCCATCCTTCTA-AACCCT---------CTCCACT--------CTCAGGCAACCT--------------------------------------TG--------tctctctctctctctctctctctctctTTGAAAGGAAGGAAGAATGAAGCCACACC-TTCTTCAGTCCCCTGGCAGAAGAGAACCAGCAGCTGG-ACATGGGCACTGCCATCAAGGTGagagtcacagaaaacggaagggactctagctgacatccaggcagcccacttgtctctc-agacaggaaagaaacaggcccaagaccaca--cagctcagaaaga-------cagcacttgggct------a---aaacc--------------------caggtctgct-actgc--------------------------cagg----ctgatgcccgttctCC-----------------------CTGTGAGCAGCGCC-T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30907335 337 + 172585720 CCTTCCCTCCCAGTTCTTACCCTGGAGCCAGCTCCCTCCTTCTA-GACCCT---------CTCCACT--------CTCAGGCAACCT--------------------------------------TG--------TCTCTCTCTCTCTCTTT----------------GAAAGGAAGAATGAAGTCACAC----CTTCAGTCCCCTGGCAGAAGAGAACCAGCAGCTGG-ACATGGGTCCTGCCATCAAGGTGAGAGCCACAGAAAACAGAAGGGACTCTAGCTGACATGCAGACGACCCACCTGTCTCTC-AGACAAGAAAGAAACAGGCCCAAGACCACA--TAGCTCAGAAAGA-------CAGCACCTGGGCT------A---AAACC--------------------CAGGTCTGCC-ACTGC--------------------------CAGG----CTGACGCCCGTCCTCC-----------------------CTACAAACAGTG-C-T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30196870 337 - 170955103 CCTTCCCTCCCAGTTCTTACCCTGGAGCCAGCTCCCTCCTTCTA-AACCCT---------CTCCACT--------CTTAGGCAACCT--------------------------------------TG--------TCTCTCTCTCTCTCTTT----------------GAAAGGAAGAATGAAGTCACAC----CTTCAGTCCCCTGGCAGAAGAGAACCAGCAGCTGG-ACATGGGTCCTGCCATCAAGGTGAGAGTCACAGAAAATAGAAGGGACTCTAGCTGACATCCAGACGACCCACCTGTCTCTC-AGACAAGAAAGAAACAGGCCCAAGACCACA--TAGCTCAGAAAGA-------CAGCACTTGGGCT------A---AAACC--------------------CAGGTCTGCC-ACTGC--------------------------CAGG----CTGACGCCCGTCCTCC-----------------------CTACAAACAGTG-C-T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     445779 340 +   1495729 CCTTCCCTCCCAGTTCTTACCCTGGAGCCAGCTCCCTCCTTCTA-GACCCT---------CTCCACT--------CTCAGGCAACCT--------------------------------------TG--------TCTCTCTCTCTCTCTTT----------------GAAAGGAAGAATGAAGTCACACC-TTCTTCAGTCCCCTGGCAGAAGAGAACCAGCAGCTGG-ACATGGGTCCTGCCATCAAGGTGAGAGCCACAGACAATAGAAGGGACTCTAGCTGACATGCAGACGACCCACCTGTCTCTC-AGACAAGAAAGAAACAGGCCCAAGACCACA--TAGCTCAGAAAGA-------CAGCACCTGGGCT------A---AAACC--------------------CAGGTCTGCC-ACTGC--------------------------CAGG----CTGACGCCCGTCCTCC-----------------------CTAAAAACAGTG-C-T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     549386 337 -    863181 CCTTCCCTCCTAGTTCTTACCCTGGAGCCAGCTCCCTCCTTCTA-GACCCT---------CTCCACT--------CTCAGGCAACCT--------------------------------------TG--------TCTCTCTCTCTCTCTTT----------------GAAAGGAAGAATGAAGTCACAC----CTTCAGTCCCCTGGCAGAAGAGAACCAGCAGCTGG-ACATGGGTCCTGTCATCAAGGTGAGAGTCACAGAAAATAGAAGGGACTCTAGCTGACATCCAGACGACCCACCTGTCTCTC-AGACAAGAAAGAAACAGGCCCAAGACCACA--TAGCTCAGAAAGA-------CAGCACCTGGGCT------A---AAACC--------------------CAGGTCTGCC-ACTGC--------------------------CAGG----CTGACGCCCGTCCTCC-----------------------CTACAAACAGTG-C-T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29696102 335 -  71996105 CCTTCCCTCCCAGTTCTTACCCTGGAGCCAGCTCCCTCCTTCTA-AACCCT---------CTCCACT--------CTCAGGCAACCT--------------------------------------TG----------TCTCTCTCTCTCTTT----------------GAAAGGAAGAATGACATCACAC----CTTCAGTCCCCTGGCAGAAGAGAACCAGCAGCTGG-ACATGGGTCCTGTCATCAAGGTGAGAGTCACAGAAAATAGAAGGGACTCTAGCTGACATCCAGACGACCCACCTGTCTCTC-AGACAAGAAGGAAACAGGCCCAAGACCACA--TAGCTCAGAAAGA-------CAGCACCTGGGCT------A---AAACC--------------------CAGGTCTGCC-ACTGC--------------------------CCGG----CTGACGCCCGTCCTCC-----------------------CTACAAACAGTG-C-T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     431628 337 -    735854 CCTTCCCTCCTAGTTCTTACCCTGGAGCCAGCTCCCTCCTTCTA-GACCCT---------CTCCACT--------CTCAGGCAACCT--------------------------------------TG--------TCTCTCTCTCTCTCTTT----------------GAAAGGAAGAATGAAGTCACAC----CTTCAGTCCCCTGACAGAAGAGAACCAGCAGCTGG-ACATGGGTCCTGTCATCAAGGTGAGAGTCACAGAAAATAGAAGGGACTCTAGCTGACATCCAGACGACCCACCTGTCTctc-agacaagaaagaaacaggcccaagaccaca--tagctcagaaaga-------cagcacctgggct------a---aaacc--------------------caggtctgcc-actgc--------------------------caga----ctgatgcccgtcctcc-----------------------ctacaAACAGTG-C-T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     338639 348 -   1829203 CCTTCCCTCCCAGTTCTTACCCTGGAGCCAGCTTCCTCCTTCTA-AACCCT---------CTCCACT--------CTCAGGCAACCT--------------------------------------TGtctctctctctctctctctctctTT----------------GAAAGGAAGAATCAAGTCACACC-TTCTTCAGTTCCCTGGCAGAAGTGAACCAGCAGCTGG-ACATGGGTCCTGCCACCAAGGTGAGAGTCACAGAAAATAGAAGGGACTCTAGCTGACATCCAGAAGACCCACCTGTCTctc-agacaagaaagaaacaggcccaagaccaca--tagctcagaaaga-------cagcacttgggct------a---aaacc--------------------caggtctgcc-actgc--------------------------cagg----ctgACGCCCGTCCTCC-----------------------CTATAAACAGTG-C-T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30527003 364 + 171630274 TGCTCCCTCTCAGTTCTTA-CCTGGAGCCAACTTCCTCCTTCTA-AACCCTTTGTTCCCCCTCCACT--------CTCAGGCAACCT--------------------tctctctctctctttctctc--------tctctctctctctctctctctctctctctc---GAAAGGAAGAATGAAGCCATGCC-TTCTTCAGTCCCCTG-----------GCTGCAGTTAGAACATGGGCCCTGCCACCAAGGTGAGAGTCACAGAAAAGGGAAGGGACGCTGGCTGACATCCAGGTAACCCACTTGTctcac-agac----aagcaacaggcccaagaccaca--cagct-agaaaga-------cagagcttgggct----------aaacc--------------------taggtctgcc-actgc--------------------------cagc----ttgatgcctgtcctcc-----------------------ctgTGAGCAGCACC-T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           330415 399 +    515838 CCCTCCCTCTCAGTTCTTACCCTGGAGCCAACTCCCTCCTTCTA-AACCCTTTGTCCCCCCTCCACT--------CTCAGGCAAGCTtctgtctctctgtctgtctgtctctctctctgtttctctc--------tctctctctctctctctctctctctctctctctGAAAGGAAGAATGAAGCCATGCCTTTCTTCAGTCCCCTGGCAGAAAAGAAGCTGCAACTAG-ACATGGGCCCTGCCACCAAGGTAagagtcacagaaaaggaaagggactctggctgacatccaggtgacccacttgtctctc-agat----aagaaacaggcccaagaccaca--cagct-agaaaga-------cagagcttggact----------aaacc--------------------caggtctgcc-actgc--------------------------cagc----ccgacgcccatcctcC-----------------------CTGTGAGCAGCACC-T
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     960585 359 -   1771730 CCCTCCCTCTCAGTTCTTACCCTGGAGCCAACTCCCTCCTTCTA-AACCCTTTGTCCCCCCTCCACT---------TTAGGCAACCT--------------------------------------tc--------tctccctctctctctctctctctctctctctTTGAAAGGAAGAATGAAGCCATGCC-TTCTTCAGTCCCCTGGCAGAAGAGAAGCTGCAGCTAG-ACATGGGCCCTGCCACCAAGGTGAGAGTCACAGAAAAGGGAAGGGACTCTGGCTGACATCCAGGGGACCCACTTGTCTCTC-AGAC----aagcaacaggcccaagaccaca--cagct-agaaaga-------cagagcctgggct----------aaacc--------------------caggtctgcc-actgc--------------------------cagc----ccgacgcccgtcctcC-----------------------CTGTGAGCAGCACC-T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     145152 374 -    486031 TCCTCCCTCTCAGTTCTTACCCTGGAGCCAACTCCCTCCTTCTA-AACCCTTTGTCCCCCCTCCACT--------CTCAGGCAACCT------------------------tctctctctatcattc--------tctctctctctctctctctctctctctctctctGAAAGGAAGAATGAAGCCATGCC-TTCTTCAGTCCCCTGGCAGAAGAGAAGCTGCAGCTAG-ACATGGGCCCTGCCACCAAGGTGAGAGTCACAGAAAAGGGAAGGGACTGTGGCTGACATTCACGTGATCCACTTGTCTCTC-AGAC----aagcaacaggcccaagaccaca--cagct-agaaaaa-------cagagcttgggct----------aaacc--------------------cagctctgcc-actgc--------------------------cagc----ctgacgcccgtcctct-----------------------ctgtgagcagcACC-T
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     394500 334 -   1411461 CCTCCCCTCTCAGTTCTTACCCTAGAGCCAGCTCCCTCTCGCCA-AACCCTCCACCTTC-------------------AGGAAATCG--------------------------------------TG--------TCTTTCTCCCCCTCTTT-----------------AAAAGAAGAATGAAGCCAGGC--CTCCTCAGCCACCTGGCAGAAGAGTAGCAGCTGCCAG-ACAGGGACCCTGCAGCTGAGGTGACAGTCACAGAGAAGggaagggaccctggctgacatccaggcgacccactcacctctc-agat----gagaaacaggcccaaagccaca--cagctcagatggg-------cagagcttgggct------a---aaact--------------------caggtgagcc-actgc--------------------------cagt----ccgacgcccgtcctcC-----------------------CTGTGAGCGGCTCCTT
i proCoq1.NW_012149775v1   I 989 C 0
s otoGar3.GL873550           388059 331 +  18854210 CCCCCCCGCTCAGTTCTTACCCTAAAGCCAGCTCCCTCTGGCCA-AACCCTCTGGCTTCCATCAACT--------CTTAGGAAATCA--------------------------------------TA--------TCTTTCTCTCCCTCTT-----------------------AAGAAT------AGGC--CTCCTCAG-TACCCTGCAGAAGAATACCAGCTGCCAG-ACACAGACTCTGTAGCTGAGGTGAGGGCCACAAAGAAAGGAAGGGACCCTGAATGACTTCAAGGCAACTC-CTCACTTCTCAAGAT----GAGAAATAGGCCCAAGGCCACA--CAACTCAGATGTA-------CCGAGCTTGGGCT------A---AAATA--------------------CAGGCCAGCC-ACTGC--------------------------CAGC----CTGATGTCCCTCCTCC-----------------------CTGTGAGGGGCTCC-T
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58135578 300 -  94987271 TTGTCCTTTTC--CTCTTACCCTGAAGCCAGCACCC-CCTCCCA-AACACC---------CCCTGCTGCCCTCTACACAGGAAATCA--------------------------------------CA--------CCT---TCCCTCACTTT------------------CAGAGAGCCCAGAGTCAGG---TTCCTCAGTCCCCTCACAGAATAGCCACTGCTGCCAG-ACAA----CCTGCCTATCAGATGAGA-------------------------------AATCAGAC------CCAAAGTTTG-AGAC----ATATAGCAGGCCCAAAAGGACA--GGGC--AGGCCAACCTACACCATCTCCTTGGTT------AATTAATCC--------------------CCAGTTGGCCTAAAGC--------------------------CAAC----CTAACAACCATGCTTC-----------------------C---AAAGTACTCC-T
i mm10.chr17               C 0 C 0
s canFam3.chr35            26393606 393 +  26524999 ----CTCCCTCGGTTCTCATCCCGGGGCCAGCATCCTCCTTCCACCACCCTGGGGCTCCCCTCCCCA--------ATCAGG-AATCC--------------------------------------GG--------TCTCCCTCTGTCTCT------------------GACAGGAAGGACTGAGCCAGGAC-CACCTCAGTTCCCCA----TAGAACAGCAGCCACTGG----------------------TGAGT----TAGAGACGAGAAGGGACCTTAGCTGACATCTAGGCCACTCACTCACACATC-AGAT---ACAGAAGCCAGCCCAGGCTCAGGGCTGGCTCAGGGCGT-------CAGGGCTCAGCCTTCTGGCA---GGGTCTCCACTGCTCAGCTTTCTGGCAGGGCCTCC-ACTGCTCAGCCTCTAGTGTTCAGCCTCCCAGCAGGGCCTCTAATACTCAGCCTCCTGGCAGGGCCTCTACTGCTCAGTCTCCCAGCAGGGCC-T
i canFam3.chr35            C 0 I 65
e micMur3.chr6               429793 1486 + 123392446 I

a score=53603.000000
s hg38.chr6_GL000254v2_alt  1542362 6 +   4827813 AGAAAC
s panTro5.chr6             30412196 6 + 175400573 AGAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30646428 6 + 173848474 AGAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     354467 6 +   2037526 AGAAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75017480 6 + 122973662 AGAAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30907672 6 + 172585720 AGAGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30197207 6 - 170955103 AGAGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     446119 6 +   1495729 AGAGAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     549723 6 -    863181 AGAGAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29696437 6 -  71996105 AGAGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     431965 6 -    735854 AGAGAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     338987 6 -   1829203 AGAAAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30527367 5 + 171630274 AGA-AC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           330814 5 +    515838 AGA-AC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     960944 5 -   1771730 AGA-AC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     145526 5 -    486031 AGA-AC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     394834 6 -   1411461 AGGGAC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           388390 6 +  18854210 AGAAAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58135878 6 -  94987271 AGAAAC
i mm10.chr17               C 0 C 0
e micMur3.chr6               429793 1486 + 123392446 I
e canFam3.chr35            26393999 65 +  26524999 I

a score=1100402.000000
s hg38.chr6_GL000254v2_alt  1542368  94 +   4827813 ACCTCCCAGCTGCCGCCTACTTGCCCAGGCT---------------------------------CACCCTGCC------------CTACACGGGCGCAC--------CGCCTCAG---GGCTTCCTGAAACAGCCTCACTTACCAGCGCG
s panTro5.chr6             30412202  94 + 175400573 ACCTCCCAGCTGCCGCCTACTTGCCCAGGCT---------------------------------CACCCTGCC------------CTATACGGGCGCAC--------CGCCTCAG---GGCTTCCTGAAACAGCCTCACTTACCAGCGCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30646434  94 + 173848474 ACCTCCCAGCTGCCGCCTACTTGCCCAGGCT---------------------------------CACCCTGCC------------CTATACGGGCGCAC--------CGCCTCAG---GGCTTCCTGAAACAGCCTCACTTACCAGCGCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     354473  94 +   2037526 ACCTCCCAGCTGCCGCCTACTTGCCCAGGCT---------------------------------CACCCTGCC------------CTACACGGGCGCAC--------CGCCTCAG---GGCTTCCTGAAACAGCCTCACTTACCAGCGCG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75017486  94 + 122973662 ACCTCCCAGCTGCCACCTACTTGCCCAGGCT---------------------------------CACCCTGCC------------CTACATGGGCGCAC--------TGCCTCAG---GGCTTCCTGAAACAGCCTCACTTACCAGCGCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30907678  94 + 172585720 ACCTCCCAGCTGCCGCCTGCTTGCCCAGGCT---------------------------------CACCCTGCC------------CTACACGGGTGCAC--------CACCTCAG---GGCTTCCTGAAACAGCATCACTTACCAGCGCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30197213  94 - 170955103 ACCTCCCAGCTGCCGCCTGCTTGCCAAGGCT---------------------------------CACCCTGCC------------CTACACGGGTGCAC--------CGCCTCAG---GGCTTCCTGAAACAGCATCACTTACCAGCGCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     446125  94 +   1495729 ACCTCCCAGCTGCCGCCTGCTTGCCAAGGCT---------------------------------CACCCTGCC------------CTACACGGGTGCAC--------CGCCTCAG---GGCTTCCTGAAACAGCATCACTTACCAGCGCG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     549729  94 -    863181 ACCTCCCAGCTGCCGCCTGCTTGCCCAGGCT---------------------------------CACCCTGCC------------CTACACGGGTGCAC--------CGTCTCAG---GGCTTCCTGAAACAGCATCACTTACCAGCGCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29696443  94 -  71996105 ACCTCCCAGCTGCCGCCTGCTTGCCCAGGCT---------------------------------CACCCTGCC------------CTACACGGGTGCAC--------CGCCTCAG---GGCTTCCTGAAACAGCATCACTTACCAGCGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     431971  94 -    735854 ACCTCCCAGCTGCCGCCTGCTTGCCCAGGCT---------------------------------CACCCTGCC------------CTACACGGGTGCAC--------CGTCTCAG---AGTTTCCTGAAACAGCATCACTTACCAGCGCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     338993  94 -   1829203 ACCTCCCAGCTGCCGCCTACTTGCCCAGGCT---------------------------------CACCCTGCC------------CTACACGGGTGCAC--------CGCCTCAG---GGCTTCCTGAAACAGCGTCACTTACCAGCGCG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30527372  94 + 171630274 ACCTCCCAGCTGCCGCCTACTCGCCGAGGCT---------------------------------CACTCTGCC------------CAACACGGGCACAA--------CACTTCAG---GGCTTCCTGTACCAGCCTCACTTACCAGTGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           330819  94 +    515838 ACCTCCCAGCAGCCGCCTACTCGCCCAGCCT---------------------------------CACTCTGCC------------CTACACGGGCACAA--------CACTTCAG---GGCTTCCTGTACCAGCCTCACTTACCAGCGCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     960949  94 -   1771730 ACCTCCCAGCTGCCGCCTACTCGCCCAGCCT---------------------------------CACTCTGCC------------TTACACGGGCACAA--------CACTTCAG---GGCTTCCTGTACCAGCCTCACTTACCAGTGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     145531 102 -    486031 ACCTCCCAGCTGCCGCCTACTCGCCCAGGCT---------------------------------CACTCTGCC------------CTACACGGGCACAACACTTCAGCACTTCAG---GGCTTCCTGTACCAGCCTCACTTACCAGCGCA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     394840  91 -   1411461 AGCTCCCGGCAGCCACTTACTCACCCAGGCT---------------------------------CTCCCTGCT------------CTGCACGGGC-CAC--------CACCTCAG---GGCTTC--CCAGCCGCCTTGCTTACCAGTGCA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           388396  84 +  18854210 ACCTCCCAGCAGCCATCTACTTACCCAA------------------------------------------GCT------------CTAAATGGGC-AAC--------CACTTCAG---AGCTTCCTCTAACAGCCTTGCTTACCAGTGCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58135884  72 -  94987271 ACTTCCCA-----------CCTGGCCAGCCC---------------------------------CTCCCT--C------------CAACGCGTGAGCAA--------CGC-TCAGCTTGGATTCC-----------CACGTACCAGTGCA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26394064 139 +  26524999 GCCTCTCAGCAGGGCCTTTATCGCTCAGCCTCCTGGCAGTGCCTCTACCGCTCAGCCTCCAGACCACTCAGCCTCCTAGCTCCTGCTCCATATGCCAAC--------TGCCTCAG---GCTTCTTCTCAACAGCCTCACTTACCAGGGCA
i canFam3.chr35            I 65 C 0
e micMur3.chr6               429793 1486 + 123392446 I

a score=1724174.000000
s hg38.chr6_GL000254v2_alt  1542462 96 +   4827813 GCCAGGATATCAGCTTCTCCCTTTGCCTGGAAGCCCTGAATTTTGTCTCTGTCCCTCCTTAGGGTACTCAGGTGGTTCAGGATTTTTTCCTGTGGA
s panTro5.chr6             30412296 96 + 175400573 GCCAGGATATCAGCTTCTCCCTTTGCCTGGAAGCCCTGAATTTTGTCTCTGTCTCTCCTTAGGGTACTCAGGTGGTTCAGGATTTTTTCCTGTGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30646528 96 + 173848474 GCCAGGATATCAGCTTCTCCCTTTGCCTGGAAGCCCTGAATTTTGTCTCTGTCTCTCCTTAGGGTACTCAGGTGGTTCAGGATTTTTTCCTGTGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     354567 96 +   2037526 GCCAGGATATCAGCTTCTCCCTTTGCCTGGAAGCCCTGAATTTTGTCTCTGTCTCTCCTTAGGGTACTCAGGTGGTTCAGGATTTTTTCCTGTGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75017580 96 + 122973662 GCCAGGATATCAGCTTCTCCCTTTGCCTGGAAGCCCTGAATTTTGTCTCTGTCTCTCCTTAGGGTACTCAGGTGGTTCAGGATTTTTTCCTGTGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30907772 96 + 172585720 GCCAGGATATCAGCTTCTCCCTTTGCCTGGAAGCCCTGAATTTTGTCTCTGTCTCTCCTTAGGGTACTCAGGTGGTTCAGGATTTTTTCCTATGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30197307 96 - 170955103 GCCAGGATATCAGCTTCTCCCTTTGCCTGGAAGCCCTGAATTTTGTCTCTGTCTCTCCTTAGGGTACTCAGGTGGTTCAGGATTTTTTCCTGTGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     446219 96 +   1495729 GCCAGGATATCAGCTTCTCCCTTTGCCTGGAAGCCCTGAATTTTGTCTCTGTCTCTCCTTAGGGTACTCAGGTGGTTCAGGATTTTTTCCTGTGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     549823 96 -    863181 GCCAGGATATCAGCTTCTCCCTTTGCCTGGAAGCCCTGAATTTTGTCTCTGTCTCTCCTTAGGGTACTCAGGTGGTTCAGGATTTTTTCCTGTGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29696537 96 -  71996105 GCCAGGATATCAGCTTCTCCCTTTGCCTGGAAGCCCTGAATTTTGTCTCTGTCTCTCCTTAGGGTACTCAGGTGGTTCAGGATTTTTTCCTGTGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     432065 95 -    735854 GCCAGGATATCAGCTTCTCCCTTTGCCTGGAAGCCCTGAATTTTGTCTCTGTCTCTCCTTAGGGTACTCAGGTGGTTCAGGATTTTTTCCTGTGG-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     339087 96 -   1829203 GCCAGGATATCAGCTTCTCCCTTTGCCTGGAAGCCCTGAATTTTGTCTCTGTCTCTCCTTAGGGTACTCAGGTGGTTCAGGATTTTTTCCTGTGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30527466 96 + 171630274 GCCAGGATATCACCTTCTCCCTTTGCCTGGAAGCCCTGAATTTTGTCTCTGTCTCTCCTTAGGGTACTCAGGTGATTCAGGATTTTTTCCTGTGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           330913 96 +    515838 GCCAGGATATCACCTTCTCCCTTTGCCTGGAAGCCCTGAATTTTGTCTCTGTCTCTCCTTAGGGTACTCAGGTGATTCAGGATTTTTTCCTGTGGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     961043 96 -   1771730 GCCAGGATATCACCTTCTCCCTTTGCCTGGAAGCCCTGAATTTTGTCTCTGTCTCTCCTTAGGGTGCTCAGGTGATTCAGGATTTTTTCCTGTGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     145633 96 -    486031 GCCAGGATATCACCTTCTCCCTTTGCCTGGAAGCCCTGAATTTTGTCTCTGTCTCTCCTTAGGGTACTCAGATGATTCAGGATTTTTTCCTGTGGA
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               431279 96 + 123392446 GCCAGGATGTCAGCTTCTCCCTTGGCCTGGAAGCCCTGAATTTTCTCTCTGTCCCTCCTTAGGGCACTCCGGTGGTTCAGGATTTTTTCCTGTGGA
i micMur3.chr6             I 1486 I 202
s proCoq1.NW_012149775v1     394931 96 -   1411461 GCCAGGATATCAGCTTCTCCCTTGGCCTGGAAGCCCTGAATTTTCTCTCTGTCCCTCCTTAGGGTACTCAGGTGGTTCAGGATTTTTTCCTGTGGA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           388480 96 +  18854210 GCCAGGATATCAGCTTCTCCCTTGGCCTGAAAGCCCTGAATTTTTTCTCTGTCTCTTCTTAAGGTACTCAGGTGGTTAAGGATTTTTTCCTGTGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58135956 96 -  94987271 GCCAGAATATCAGCTTCTCCCTTGGCTTGAAAGCCCTGGATTTTGTCTCTGTCTCTCCTTAGGGTGTTCAAGTGGTTCAGAATTTTCTCCTAAGGA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26394203 96 +  26524999 GACACGATATCCGAATCTCCCTTGGCCGGACATCACTGAATTTCGCCTCTGTCTCTCCCCAGGATGCTCAGGAGGCTCAGGACTTCTTCCTGTAAA
i canFam3.chr35            C 0 C 0

a score=62402.000000
s hg38.chr6_GL000254v2_alt  1542558 5 +   4827813 AAAAC
s panTro5.chr6             30412392 5 + 175400573 AAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30646624 5 + 173848474 AAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     354663 5 +   2037526 AAAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75017676 5 + 122973662 TAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30907868 5 + 172585720 AAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30197403 5 - 170955103 AAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     446315 5 +   1495729 AAAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     549919 5 -    863181 AAAAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29696633 5 -  71996105 AAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     432160 5 -    735854 AAAAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     339183 5 -   1829203 AAAAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30527562 5 + 171630274 GAAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           331009 5 +    515838 GAAAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     961139 5 -   1771730 GAAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     145729 5 -    486031 GAAAC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     395027 5 -   1411461 AAGAT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           388576 5 +  18854210 AAGAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58136052 5 -  94987271 AAGAT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26394299 5 +  26524999 AAGAC
i canFam3.chr35            C 0 I 732
e micMur3.chr6               431375 202 + 123392446 I

a score=426347.000000
s hg38.chr6_GL000254v2_alt  1542563 32 +   4827813 AAGCAGTGGCAA------------CAGGTGGATGCTCTGGGCTG
s panTro5.chr6             30412397 32 + 175400573 AAGCAGTGGCAA------------CAGGTGGATGCTCTGGGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30646629 32 + 173848474 AAGCAGTGGCAA------------CAGGTGGATGCTCTGGGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     354668 32 +   2037526 AAGCAGTGGCAA------------CAGGTGGATGCTCTGGGCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75017681 32 + 122973662 AAGCAGTGGGAA------------CAGGTGGATGCTCTGGGCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30907873 32 + 172585720 AAGCAGTGGGAA------------CAGGTGGATGCTCTGGGCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30197408 32 - 170955103 AAGCAGTGGGAA------------CAGGTGGATGCTCTGGGCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     446320 32 +   1495729 AAGCAGTGGGAA------------CAGGTGGATGCTCTGGGCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     549924 32 -    863181 AAGCAGTGGGAA------------CAGTTGGATGCTCTGGGCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29696638 32 -  71996105 AAGCAATGGGAA------------CAGTTGCATGCTCTGGGCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     432165 32 -    735854 AAGCAATGGGAA------------CAGTTGGATGCTCTGGGCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     339188 32 -   1829203 ATGCAGTGGGAA------------CAGGTGGATTCTCTGGGCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30527567 32 + 171630274 AAGCAGTGGGAA------------CAGGTGGATGCTCTGGGCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           331014 32 +    515838 AAGCAGTGGGAA------------CAGGTGGATGCTCTGGGCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     961144 32 -   1771730 AAGCAGTGGGAA------------CAGGTGGATGCTCTGGGCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     145734 32 -    486031 AAGCAGTGGGAA------------CAGGTGGATGCTCTGGGCTG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     395032 32 -   1411461 AAGCAGCAGGGA------------CAGGTGGATGCTCTGGGCCG
i proCoq1.NW_012149775v1   C 0 I 61
s otoGar3.GL873550           388581 44 +  18854210 AAGCAGTAGAGAAAATGGAAAGATAAGGTGGATACTCTCGGCTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58136057 32 -  94987271 AAGCAGCGGAGA------------GAGATGAGTGTCCTGAGCTG
i mm10.chr17               C 0 C 0
e micMur3.chr6               431375 202 + 123392446 I
e canFam3.chr35            26394304 732 +  26524999 I

a score=539369.000000
s hg38.chr6_GL000254v2_alt  1542595 54 +   4827813 GGGCAGGAAGGGAGACTCAGGCTGAGTCCTCTGAGGACTGCAAGGTGGAGCATC
s panTro5.chr6             30412429 54 + 175400573 GGGCAGGAAGGGAGACTCAGGCTGAGTCCTCTGAGGACTGCAAGGTGGAGCGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30646661 54 + 173848474 GGGCAGAAAGGGAGACTCAGGCTGAGTCCTCTGAGGAATGCAAGGTGGAGCGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     354700 54 +   2037526 GGGCAGGAAGGGAGACTCAGGCTGAGTCCTCCGAGGACTGCAAGGTGGAGCGTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75017713 54 + 122973662 GGGCAGGAAGGGAGACTCAGGCTGAGTCCTCTGAGGACTGCAAGGTGGAGCGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30907905 54 + 172585720 GGGCAGGAGGGGAGAATCAGGCTGAGTCCTCTGAGGACTGCAGGGTGGAGCGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30197440 54 - 170955103 GGGCAGGAGGGGAGAATCAGGCTGAGTCCTCTGAGGACTGCAGGGCGGAGCGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     446352 54 +   1495729 GGGCAGGAGGGGAGAATCAGGCTGAGTCCTCTGAGGACTGCAGGGCGGAGGGTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     549956 54 -    863181 GGGCAGGAGGGGAGAATCAGGCTGAGTTCTCTGAGGACTGCAGGGTGGAGCGTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29696670 54 -  71996105 GGGCAGGAGGGGAGAATCAGGCTGAGTCCTCTGAGGACTGCAGGGTGGAGCATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     432197 54 -    735854 GGGCAGGAGGGGAGAATCAGGCTGAGTTCTCTGAGGACGGCAGGGTGGAGCGTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     339220 54 -   1829203 GGGCAGGAGGGGAGAATCAGGCTGAGTCCTCTGAGGACTGCAGGGCGGAGCGTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30527599 53 + 171630274 GGGCAGGAGGGGAGACTCAGGCTGAGTCCTCTGAGGGCTGCA-GGCGGATCGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           331046 53 +    515838 GGGCAGAAGGGGAGACTCAGGCTGAGTCCTCTGAGGGCTGCA-GGCGGAGCGTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     961176 53 -   1771730 GGGCAGAAGGGGAAACTCAGGCTGAGTCCTCTGAGGGCTGCA-GGCGGAGTGTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     145766 53 -    486031 GGGCAGGAGGGGAGACTCAGGCTGAGTCCTCTGAGGGCTGCA-GGCGGAGCGTC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           388625 38 +  18854210 GGGCAGAAGGGTGGACTCAG-----GTCATTGGAGGA--GCA---------GCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58136089 38 -  94987271 GGGCAGGAGGG--ACACCAGACAGAACCTTCC----CTCGCAGG----------
i mm10.chr17               C 0 C 0
e micMur3.chr6               431375 202 + 123392446 I
e proCoq1.NW_012149775v1     395064 61 -   1411461 I
e canFam3.chr35            26394304 732 +  26524999 I

a score=328440.000000
s hg38.chr6_GL000254v2_alt  1542649 33 +   4827813 CAGAGAAGGTGGCAAGGCACCCTCGGGGGTGAA
s panTro5.chr6             30412483 33 + 175400573 CAGAGAAGGTGGCAAGGCACCCTCGGGGGTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30646715 33 + 173848474 CAGAGAAGGTGGCAAGGCACCCTCGGGGGTGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     354754 33 +   2037526 CAGAGAAGGTGGCAAGGCACCATCGGGGGTGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75017767 33 + 122973662 CAGAGAAGGTGGCAAGGCACCCTCGGGGGTGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30907959 33 + 172585720 CAGAGAAGGTGGCAAGCCACCCTCGGGGGTGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30197494 33 - 170955103 CAGAGAAGGTAGCAAGCCACCCTCGGGGGTGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     446406 33 +   1495729 CAGAGAAGGTGGCAAGCCACCCTCGGTGGTGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     550010 33 -    863181 CAGTGAAGGTGGCAAGTCACCCTCGGGGGTGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29696724 33 -  71996105 CAGAGAAGGTGGCAAGTCACCCTCGGGGGTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     432251 33 -    735854 CAGAGAAGGTGGCAAGTCACCCTCGGGGGTGAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     339274 33 -   1829203 CAGTGAAGGTGGCAAGCCACCCTCGGGGGTGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30527652 33 + 171630274 CACAGAAGGTGGCAAGGGACCCTTGTGGGTGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           331099 33 +    515838 CACAGAAGGTGGCAAGGCACCCTTGCGGGTGAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     961229 33 -   1771730 CACAGAAGGTGGCAAGGCACCCTTGCGGGTGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     145819 33 -    486031 CACAGAAGGTGGCAAGGCACCCTTGGGGGTGAG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           388663 32 +  18854210 CAAGGAAGGCAGCAGGGCATCCACAGGGGTGC-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58136127  6 -  94987271 -------------------CCCTGG--------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26395036 33 +  26524999 CAGAGCAGGTGGGGGGACAGAGCAGGCCGTGGA
i canFam3.chr35            I 732 C 0
e micMur3.chr6               431375 202 + 123392446 I
e proCoq1.NW_012149775v1     395064 61 -   1411461 I

a score=2874853.000000
s hg38.chr6_GL000254v2_alt  1542682 177 +   4827813 --GAGGGCTTACCCTGTGGGGCTGGGCGGCCTTCTCCATGAGGACGGCCGTGTGGGGCCTGTGCTCCCGGGACTCCCGGCACATCACGCACAGCAGCTTCCCGTCGTCCTCACAGTAGTAGTGCAGCTTCTCTCGGTGTCGCTCGCACAACTTTGCATCCTGCTGCTCCCGGGTCACCT
s panTro5.chr6             30412516 177 + 175400573 --GAGGGCTTACCCTGTGGGGCTGGGCGGCCTTCTCCATGAGGACGGCCGTGTGGGGCCTGTGCTCCCGGGACTCCCGGCACATCACGCACAGCAGCTTCCCGTCGTCCTCACAGTAGTAGTGCAGCTTCTCTCGGTGTCGCTCGCACAACTTCGCGTCCTGCTGCTCCCGGGTCACCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30646748 177 + 173848474 --GAGGGCTTACCCTGTGGGGCTGGGCGGCCTTCTCCATGAGGACGGCTGTGTGGGGCCTGTGCTCCCGGGACTCCCGGCACATCACGCACAGCAGCTTCCCGTCGTCCTCACAGTAGTAGTGCAGCTTCTCTCGGTGTCGCTCGCACAACTTCGCGTCCTGCTGCTCCCGGGTCACCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     354787 175 +   2037526 --GAGGGCTTACCCTGT-GGGCTGGGC-GCCTTCTCCATGAGGACGGCCGTGTGGGGCCTGTGCTCCCGGGACTCCCGGCACATCACGCACAGCAGCTTCCCGTCGTCCTCACAGTAGTAGTGCAGCTTCTCTCGGTGTCGCTCGCACAACTTCGCGTCCTGCTGCTCCCGGGTCACCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75017800 177 + 122973662 --GAGGGCTTACCCTGTGGGGCTGGGCGGCCTTCTCCATGAGGACGGCCGTGTGGGGCCGGTGCTCCCGGGACTCCCGGCACATCACGCACAGCAGCTTCCCGTCGTCCTCACAGTAGTAGTGCAGCTTCTCTCGGTGTCGCTCGCACAACTTCGCGTCCTGCTGCTCCCGCGTCACCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30907992 177 + 172585720 --GAGGGCTTACCCTGTGGGGCTGGGCGGCCTTCTCCATGAGGACGGCCGTGTGGGGCCTGTGCTCCCGGGACTCCCGGCACATCACGCACAGCAGCTTCCCGTCGTCCTCGCAGTAGTAGTGCAGCTTCTCTCGGTGTCGCTCACACAACTTCGCGTCCTGCTGCTCCCGGGTCACCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30197527 177 - 170955103 --GAGGGCTTACCCTGTGGGGCTGGGCGGCCTTCTCCATGAGGACGGCTGTGTGGGGCCTGTGCTCCCGGGACTCCCGGCACATCACGCACAGCAGCTTCCCGTCGTCCTCGCAGTAGTAGTGCAGCTTCTCTCGGTGTCGCTCACACAACTTTGCGTCCTGCTGCTCCCGGGTCATCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     446439 177 +   1495729 --GAGGGCTTACCCTGTGGGGCTGGGCGGCCTTCTCCATGAGGACGGCTGTGTGGGGCCTGTGCTCCCGGGACTCCCGGCACATCACGCACAGCAGCTTCCCGTCGTCCTCGCAGTAGTAGTGCAGCTTCTCTCGGTGTCGCTCACACAACTTTGCGTCCTGCTGCTCCCGGGTCATCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     550043 177 -    863181 --AAGGGCTTACCCTGTGGGGCTGGGCGGCCTTCTCCATGAGGACGGCCGTGTGGGGCCTGTGCTCCCGGGACTCCCGGCACATCACGCACAGCAGCTTCCCGTCGTCCTCGCAGTAGTAGTGCAGCTTCTCTCGGTGTCGCTCACACAACTTCGCGTCCTGCTGCTCCCGGGTCACCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29696757 177 -  71996105 --AAGGGCTTACCCTGTGGGGCTGGGCGGCCTTCTCCATGAGAACGGCTGTGTGGGGCCTGTGCTCCCGGGACTCCCGGCACATCACGCACAGCAGCTTCCCGTCGTCCTCGCAGTAGTAGTGCAGCTTCTCTCGGTGTCGCTCACACAACTTCGCGTCCTGCTGCTCCCGGGTCACCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     432284 177 -    735854 --AAGGGCTTACCCTGTGGGGCTGGGCGGCCTTCTCCATGAGGACGGCCGTGTGGGGCCTGTGCTCCCGGGACTCCCGGCACATCACGCACAGCAGCTTCCCGTCATCCTCGCAGTAGTAGTGCAGCTTCTCTCGGTGTCGCTCACACAACTTCGCGTCCTGCTGCTCCCGGGTCACCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     339307 177 -   1829203 --AAGGGCTTACCCTGTGGGGCTGGGCGGCCTTCTCCATGAGGACGGCCGTGTGGGGCCTGTGCTCCCGGGACTCCCGGCACATCACGCACAGCAGCTTCCCATCGTCCTCGCAGTAATAGTGTAGCTTCTCTCGGTGTCGCTCACACAACTTCGCGTCCTGCTGCTCCCGGGTCACCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30527685 177 + 171630274 --GAGGCCTTACCCTGTGGGGCTGGGCAGCCTTCTCCATGAGGACGGCCGTGTGGGGCCTGTGCTCCCGGGACTCGCGGCACATCACACACAGCAGCTTCCCATCGTCCTCGCAGTAGTAGTGCAGCTTCTCCCGGTGTCGCTCACACAGCTTCGCATCCTGCTGCTCCCGGGTCACCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           331132 177 +    515838 --GAGGGCTTACCCTGTGGGGCTGGGCAGCCTTCTCCATGAGGACGGCCGTGTGGGGCCTGTGCTCCCGGGACTCCCGGCACATCACGCACAGCAGCTTCCCATCGTCCTCACAGTAGTAGTGCAGCTTCTCCCGGTGTCGCTCGCACAGCTTCGCGTCCTGCTGCTCCCGGGTCACCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     961262 177 -   1771730 --GAGGGCTTACCCTGTGGGGCTGGGCAGCCTTCTCCATGAGGACGGCCATGTGGGGCCTGTGTTCCCGGGACTCCCGGCACATCACGCACAGCAGCTTCCCATCATCCTCGCAGTAGTAGTGCAGCTTCTCCCGGTGTCGCTCGCACAGCTTCGCGTCCTGCTGCTCCCGGGTCACCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     145852 177 -    486031 --GAGGGCTTACCCTGTGGGGCTGGGCAGCCTTCTCCATGAGGACGGCCGTGTGGGGCCTGTGCTCCCGAGACTCCCGGCACATCACGCACAGCAGCTTCCCATCGTCCTCGCAGTAGTAGTGCAGCTTCTCCCGGTGTCGCTCGCACAGCTTCGCGTCCTGCTGCTCCCGGGTCACCT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     395125 177 -   1411461 --GCGGGCTTACCCTGTGGGGCTGGGCGGCCTTCTCCACGAGCACGGCCGAGTGGGGCCTGTGCTCCCGCGACTCCCGGCACATCACGCACAGCAGCTTCCCGTCGTCCTCGCAGTAGTAGTGCAGCTTCTCCCGGTGCCGCTCGCACAGCTTCGCTTCCTGCTGCTCCCGGGCCACCT
i proCoq1.NW_012149775v1   I 61 C 0
s otoGar3.GL873550           388695 177 +  18854210 --GAGGGCTTACCCTGTGGGGCTGGGCAGCCTTCTCCATCAGCACGGCTGTGTGAGGCCTGTGTTCCCGGGACTCCCGGCATATCACACACAATAGCTTCCCATCATCCTCGCAGTAGTAATGCAGCTTCTCCCGGTGCCGCTCACACAACTTCACATCCTGTTGCTCCCGGGCCACTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58136133 177 -  94987271 --GAGGACTTACTCTGTGAGGCAGGGCGGCTTTCTCCACCAGGACTGCAGTGTGGGGGCGGTGCTCCCGGGACTCCCTGCACATCACACACAACAGTTTGCCATCATCTTCACAGTAGTAGTGTAGCTTCTCCTGGTGCCGCTCACACAACTTCATGTCCTGTGGCTCGCGGGCGAGCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26395069 179 +  26524999 GGTGGGGTTTACCCGGTGGGGCTGGGCGGCCTTGTCCACGAGGACGGCCATGTGGGGCCGGTGCTCCCGAGACTCCCGGCACATGACGCACAGGAGCTTCCCATCATCCTCGCAGTAGTAGTGCAGCTTCTCGTGGTGGCGCTCGCATAGCCTGGCGTCCGGTGGCTCTCGGGCCACGT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               431375 202 + 123392446 I

a score=1964630.000000
s hg38.chr6_GL000254v2_alt  1542859 107 +   4827813 CTCCCGGCTGCCTGCCCTTGTCCACCTTCAGCCGCTCAATGTTCTCCACCAGGCTGGCCAGTTGCCACACGGGTCGGATGTTCTCCTTCTTAAAAGGCTTCTTGCAG
s panTro5.chr6             30412693 107 + 175400573 CTCCCGGCTGCCTGCCCTTGTCCACCTTCAGCCGCTCAATGTTCTCCACCAGGCTGGCCAGTTGCCACACGGGTCGGATGTTCTCCTTCTTAAAAGGCTTCTTGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30646925 107 + 173848474 CTCCCGGCTGCCTGCCCTTGTCCACCTTCAGCCGCTCAATGTTCTCCACCAGGCTGGCCAGTTGCCACACGGGTCGGATGTTCTCCTTCTTAAAAGGCTTCTTGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     354962 107 +   2037526 CTCCTGGCTGCCTGCCCTTGTCCACCTTCAGCCGCTCAATGTTCTCCACCAGGCTGGCCAGTTGCCACACGGGTCGGATGTTCTCCTTCTTAAAAGGCTTCTTGCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75017977 107 + 122973662 CTCCTGGCTGCCTGCCCTTGTCCACCTTCAGCCGCTCAATATTCTCCACCAGGCTGGCCAGTTGCCACACAGGTCGGATATTCTCCTTCTTAAAAGGCTTCTTGCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30908169 107 + 172585720 CTCCCGGCTGCCTGCCCTTGTCCACCTTCAGCCGCTCAATGTTCTCCACCAGGCTGGCCAGCTGCCACACGGGTCGGATGTTCTCCTTCTTAAAAGGCTTCTTGCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30197704 107 - 170955103 CTCCCGGCTGCCTGCCCTTGTCCACCTTCAGCCGCTCAATGTTCTCCACCAGGCTGGCCAGCTGCCACACGGGTCGGATGTTCTCCTTCTTAAAAGGCTTCTTGCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     446616 107 +   1495729 CTCCCGGCTGCCTGCCCTTGTCCACCTTCAGCCGCTCAATGTTCTCCACCAGGCTGGCCAGCTGCCACACAGGTCGGATGTTCTCCTTCTTAAAAGGCTTCTTGCAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     550220 107 -    863181 CTCCCGGCTGCCTGCCCTTGTCCACCTTCAGCCGCTCAATGTTCTCCACCAGGCTGGCCAGCTGCCACACGGGTCTGATGTTCTCCTTCTTAAAAGGCTTCTTGCAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29696934 107 -  71996105 CTCCCGGCTGCCTGCCCTTGTCCACCTTCAGCCGCTCAATGTTCTCCACCAGGCTGGCCAGCTGCCACACGGGTCGGATGTTCTCCTTCTTAAAAGGTTTCTTGCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     432461 107 -    735854 CTCCCGGCTGCCTGCCCTTGTCCACCTTCAGCCGCTCAATGTTCTCCACCAGGCTGGCCAGCTGCCACACGGGTCGGATGTTCTCCTTCTTAAAAGGCTTCTTGCAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     339484 107 -   1829203 CTCCCGGCTGCCTGCCCTTGTCCACCTTCAGCCGCTCAATGTTCTCCACCAGGCTGGCCAGCTGCCACACGGGTCGGATGTTCTCCTTCTTAAAAGGCTTCTTGCAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30527862 107 + 171630274 CTCCCGGCTGCCTGCCCTTATCCACCTTCAGCCGCTCGATGTTCTCCACCAGGCTGGCCAGCTGCCACACGGGTCGGATGTTCTCCTTCTTAAAAGGCTTCTTGCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           331309 107 +    515838 CTCCCGGCTGCCTGCCCTTGTCCACCTTCAGCCGCTCGATGTTCTCCACCAGGCTGGCCAGCTGCCACACGGGTCGAATATTCTCCTTCTTAAAAGGCTTCTTACAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     961439 107 -   1771730 CTCCCGGCTGCCTGCCCTTGTCCACCTTCAGCCGCTCAATGTTCTCCACCAGGCTGGCCAGCTGCCACACGGGTCGTATATTCTCCTTCTTAAAAGGCTTCTTACAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     146029 107 -    486031 CTCCCGGCTGCCTGCCCTTGTCCACCTTCAGCCGCTCGATGTTCTCCACCAGGCTGGCCAGCTGCCACACGGGTCGGATGTTCTCCTTCTTAAAAGGCTTCTTGCAG
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               431577 106 + 123392446 CTCCCGGC-GCCGGCCCTCGTGCGCCTTCGGCCGCTCGATGTTCTCCACCGGGCTGGCCAGCTGCCACACGGGGCGGACGTGCTCCTTCCTGAACGGCTTCTCGCAG
i micMur3.chr6             I 202 I 18
s proCoq1.NW_012149775v1     395302 107 -   1411461 CTCCCGGCTGCCGGCCCTTGTCCACCTTTAGCCGCTCGATGTTCTCCACCAAGCTGGCCAGCTGCCACACGGGTCGGATGTTCTCCTTCTTAAAGGGCTTCTTACAG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           388872 107 +  18854210 CTCCCGGCTGCCTGCCCTTGTCTACCTTCAGCCGCTCGATGTTCTCCACCAAGCTGGCCAGCTGCCACACAGGTCGGATGTTCTCCTTCTTAAAGGGCTTCTTACAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58136310 107 -  94987271 CTCCTGGCTGTCTGCCATTGTCCACCTTCAGCCGTTCAATGTTCTCCACCAGACTTGCTAGCTGCCACACGGGTCGGATGTTCTCCTTCTTAAAGGGCTTCTTGCAG
i mm10.chr17               C 0 C 0
s canFam3.chr35            26395248 107 +  26524999 CTCCTGGTTGCCGGGTCTTGTCTACCTTGAGGCGCTCAATGTTCTCCACTAGGCTGGCCAGCTGCCACACTGGCCGGATGTTCTCCTTCTTGAACGGCTTCTTGCAG
i canFam3.chr35            C 0 C 0

a score=863746.000000
s hg38.chr6_GL000254v2_alt  1542966 53 +   4827813 AGTGGGCAGACGGGGCGGCTCCCTGAGATGGGGCGGACGTCTGTGGTGCAGCT
s panTro5.chr6             30412800 53 + 175400573 AGTGGGCAGACGGGGCGGCTCCCTGAGATGGGGCGGACGTCTGTGGTGCAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30647032 53 + 173848474 AGTGGGCAGACAGGGCGGCTCCCTGAGATGGGGCGGACGTCTGTGGTGCAGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     355069 53 +   2037526 AGTGGGCAGACGGGGCGGCTCCCTGAGATGGGGCGGACATCTGTGGTGCAGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75018084 53 + 122973662 AGTGGGCAGACAGGGCGGCTCCCTGAGATGGGGCGGACGTCTGTGGTGCAGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30908276 53 + 172585720 AGTGGGCAGACAGGGCGGCTCCCTGAGATGGGGCGGACGTCTGTGGTGCAGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30197811 53 - 170955103 AGTGGGCAGACAGGGCGGCTTCCTGAGATGGGGCGGACGTCTGTGGTGCAGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     446723 53 +   1495729 AGTGGGCAGACAGGGCGGCTTCCTGAGATGGGGCGGACGTCTGTGGTGCAGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     550327 53 -    863181 AGTGGGCAGACAGGGCGGCTCCCTGAGATGGGGCGGACGTCTGTGGTGCAGCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29697041 53 -  71996105 AGTGGGCAGACAGGGCGGCTCCCTGAGATGGGGCGGACGTCTGTGGTGCAGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     432568 53 -    735854 AGTGGGCAGACAGGGCGGCTCCCTGAGATGGGGCGGACGTCTGTGGTGCAGCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     339591 53 -   1829203 AGTGGGCAGACAGGGCGGCTCCCTGAGATGGGGCGGACGTCTGTGGTGCAGCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30527969 53 + 171630274 AGCGGGCAGACGGGGCGGCTCCCTGAGATGGGGCGGACGTCTGTGGTGCAGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           331416 53 +    515838 AGCGGGCAGACGGGACGGCTCCCTGAGATGGGGCGGACATCTGTGGTGCAGCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     961546 53 -   1771730 AGCGGGCAGACGGGGCGGCTCCCTGAGATGGGGCGGACGTCTGTGGTGCAGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     146136 53 -    486031 AGCGGGCAGACGGGGCGGCTCCCTGAGATGGGGCGGACGTCTGTGGTGCAGCT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     395409 53 -   1411461 AGCGGGCACACGGGGCGGCCCCCTGAGATGGGGCGGACGTCGGTGGTGCAGCT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           388979 53 +  18854210 AGTGGGCACACAGGGCGGCCCCCTGAGACAGGGCGAACATCAGTGGTGCAGCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58136417 53 -  94987271 AGCGGGCAGACAGGCCGGTTCCCCGATATGGGGCGGATATCACTTGTGCAGCT
i mm10.chr17               C 0 C 0
s canFam3.chr35            26395355 53 +  26524999 AGTGGGCAGACGGGGCGGCCCCCCGACACGGGCCGGACATCTGTGGTGCAGCC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               431683 18 + 123392446 I

a score=2111653.000000
s hg38.chr6_GL000254v2_alt  1543019 114 +   4827813 GCGGCAGAAGACGTGGCCACAGTCAATGGTCACAGGGTCCCGCAGGTAATCAAGACAGATGGAGCAGGTCACCTCCTCTTCCAGGCTCCGTAGTGGGGCTGACGTGGCCATGGT
s panTro5.chr6             30412853 114 + 175400573 GCGGCAGAAGACGTGGCCACAGTCAATGGTCACAGGGTCCCGCAGGTAATCGAGACAGATGGAGCAGGTCACCTCCTCTTCCAGGCTCCGTAATGGGGCTGATGTGGCCATGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30647085 114 + 173848474 GCGGCAGAAGACGTGGCCACAGTCAATGGTCACAGGGTCCCGCAGGTAATCGAGACAGATGGAGCAGGTCACCTCCTCTTCCAGGCTCCGTAGTGGGGCTGACGTGGCCATGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     355122 114 +   2037526 GCGGCAGAAGACGTGGCCACAGTCAATGGTCACAGGGTCCCGCAGGTAATCGAGACAGATGGAGCAGGTCACCTCCTCTTCCAGGCTCCGTAGTGGGGCTGACGTGGCCATGGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75018137 114 + 122973662 GCGGCAGAAAACGTGGCCACAGTCAATGGTCACAGGGTCCCGCAGGTAATCGAGACAGATGGAGCAGGTCACCTCCTCTTCCAGGCTCCGTAGCGGGGCTGACGTGGCCATGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30908329 114 + 172585720 GCGGCAGAAGACGTGGCCACAGTCAATGGTCACAGGGTCCCGCAGGTAATCGAGACAGATGGAGCAGGTCACCTCCTCTTCCAGGCTCCGTAGTGGGGCTGACGTGGCCATGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30197864 114 - 170955103 GCGGCAGAAGACGTGGCCACAGTCAATGGTCACAGGGTCCCGCAGGTAATCGAGACAGATGGAGCAGGTCACCTCCTCTTCCAGGCTCCGTAGTGGGGCTGACGTGGCCATGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     446776 114 +   1495729 GCGGCAGAAGACGTGGCCACAGTCAATGGTCACAGGGTCCCGCAGGTAATCGAGACAGATGGAGCAGGTCACTTCCTCTTCCAGGCTCCGTAGTGGGGCTGACGTGGCCATGGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     550380 114 -    863181 GCGGCAGAAGACGTGGCCACAGTCAATGGTCACAGGGTCCCGCAGGTAATCGAGACAGATGGAGCAGGTCACCTCCTCTTCCAGGCTCCGTAGCGGGGCTGACGTGGCCATGGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29697094 114 -  71996105 GCGGCAGAAGACGTGGCCACAGTCAATGGTCACAGGGTCCCGCAGGTAATCGAGACAGATGGAGCAGGTCACCTCCTCTTCCAGGCTCCGTAGTGGGGCTGACGTGGCCATGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     432621 114 -    735854 GCGGCAGAAGACGTGGCCACAGTCAATGGTCACAGGGTCCCGCAGGTAATCAAGACAGATGGAGCAGGTCACCTCCTCTTCCAGGCTCCGTAGCGGGGCTGACGTGGCCATGGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     339644 114 -   1829203 GCGGCAGAAGACGTGGCCACAGTCAATGGTCACAGGGTCCCGCAGGTAATCGAGACAGATGGAGCAGGTTACCTCCTCTTCTAGGCTCCGTAGTGGGGCTGACGTGGCCATGGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30528022 114 + 171630274 GCGGCAGAAGACGTGGCCACAGTCAATGGTCACAGGGTCCCGCAGGTAATCGAGACAGATAGAGCAGGTCACCTCCTCTTCCAGGCTCCGTAGTGGGGCTGACGTGGCCATGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           331469 114 +    515838 GCGGCAGAAGACGTGGCCACAGTCAATGGTCACAGGGTCCCGCAGGTAATCGAGACAGATGGAGCAGGTCACCTCCTCTTCCAGGCTCCGTAGTGGGGCTGACGTGGCCATGGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     961599 114 -   1771730 GCGGCAGAAGACGTGGCCACAGTCAATGGTCACAGGGTCCCGCAGGTAATCGAGACAGATGGAGCAGGTCACCTCCTCTTCCAGGCTCCGTAGTGGGGCTGACGTGGCCATGGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     146189 114 -    486031 GCGGCAGAAGACGTGGCCGCAGTCAATGGTCACAGGGTCCCGCAGGTAATCGAGACAGATGGAGCAGGTCACCTCCTCTTCCAGGCTCCGTAGTGGGGCTGACGTGGCCATGGT
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               431701 114 + 123392446 GCGGCAGAGGACGCGGCCGCACTCAGCGGCCACGGGGTCCCGCAGGTGATCGAGGCAGATGGAGCAGGTCACCTCTTCTTCCAGGCTCCGCAGTGCGGCTGGCGTGGCCATGGT
i micMur3.chr6             I 18 I 719
s proCoq1.NW_012149775v1     395462 114 -   1411461 GCGGCAGAAGACGTGGCCGCAGTCAATGGTCACAGGGTCCCGCAGGTAATCGAGGCAGATGGAGCAGGTCACCTCTTCTTCCAGGCTCCGCAGTGGGGCTGACGTGGCCATGGT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           389032 114 +  18854210 CCGGCAGAAGACGTGGCCGCAGTCAATGGTCACAGGATCTCGCAGGTAATCAAGGCAGATGGAGCAGGTCACCTCTTCTTCTAGGCTCCGCAGAGGGGCTGATGTGGCCATGGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58136470 114 -  94987271 GCGACAGAAGACATGGCCACAGTCGATGGTCACCGGGTCCCTCAGGTAATCCAGGCAGATGGAGCAGGTCACCTCTTCCTCCAGGCTCCTCAAGGGGGCTGACACTGCCATTGC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26395408 114 +  26524999 ACGGCAGAATACGTGGCCACAGTCGATGGTCACTGGGTCCCGCAGGTAATCCAGGCAGATGGAGCATGTCACCTCCTCCTCTAGGCTGCGCAGCGGGGCTGATGTGGCCATGGC
i canFam3.chr35            C 0 C 0

a score=1115456.000000
s hg38.chr6_GL000254v2_alt  1543133 105 +   4827813 ATCCTTAGTTCAGAGAGGTCTCCGTTCACTGGTGAGGACTTCTTCTCCTTGGAGACGCGACAT-AGAGTCAGGAGCAAGCACAGTAA-AGGGGCAAAGGTGGCAGCC
s panTro5.chr6             30412967 102 + 175400573 ATCCTTAGTTCAGAGAGGTCTCCGTTCACTGGTGAGGA---CTTCTCCTTGGAGACGCGACAT-AGAGTCAGGAGCAAGCACAGTAA-AGGGGCAAAGGTGGCAGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30647199 105 + 173848474 ATCCTTAGTTCAGAGAGGTCTCCGTTCACTGGTGAGGACTTCTTCTCCTTGGAGACGCGACAT-AGAGTCAGGAGCAAGCACAGTAA-AGGGGCAAAGGTGGCAGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     355236 102 +   2037526 ATCCTTAGTTCAGAGAGGTCTCCGTTCACTGGTGAGGA---CTTCTCCTTGGAGACGCGACAT-AGAGTCAGGAGCAAGCACAGTAA-AGGGGCAAAGGTGGCAGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75018251 105 + 122973662 ATCCTTACTTCAGAGAGGTCTCCGTTCACTGGTGAGGACTTCTTCTCCTTGGAGATGTGACAT-ATAGTCAGGAGCAAGCACAGTAA-AGGGGCAGAGGTGGCAGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30908443 105 + 172585720 ATCCTCAGTTCAGAGAGGTCTCCGTTCACTGGTGAGGACTTCTTCTCCTTGGAGACGAGACAT-AGAGTCAGGCGCGAACACAGTAA-AGGGGCAGAGGTGGCAGCC
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             30197978 105 - 170955103 ATCCTCAGTTCAGAGAGGCCTCCGTTCACTGGTGAGGACTTCTTTTCCTTGGAGACGAGACAT-AGAGTCAGGCGCGAACACAGTAA-AGGGGCAGAGGTGGCAGCC
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     446890 105 +   1495729 AGCCTCAGTTCAGAGAGGCCTCCGTTCACTGGTGAGGACTTCTTTTCCTTGGAGACGAGACAT-AGAGTCAGGCGCGAACACAGTAA-AGGGGCAGAGGTGGCAGCC
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     550494 105 -    863181 ATCCTCAGTTCAGAGAGGTCTCCGTTCACTGGTGAGGACTTCTTCTCCTTGGAGACGAGACAT-AGAGTCAGGCGCGAACACAGTAA-AGGGGCAGAGGTGGCAGCC
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29697208 105 -  71996105 ATCCTCAGTTCAGAGAGGTCTCCGTTCACTGGTGAGGACTTCTTCTCCTTGGAGACGAGACAT-AGAGTCAGGCGCGAACACAGTAA-AGGGACAGAGGTGGCAGCC
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1     432735 105 -    735854 ATCCTCAGTTCAGAGAGGTCTCCGTTCACTGGTGAGGACTTCCTCTCCTTGGAGACGAGACAT-AGAGTCAGACGCGAACACAGTAA-AGGGGCAGAGGTGGCAGCC
i manLeu1.NW_012107142v1   C 0 I 1
s colAng1.NW_012115577v1     339758 105 -   1829203 ATCCTTAGTTCAGAGAGGTCTCCATTCACTGGTGAGGACTTCTTCTCCTTGGAGACGAGACAC-AGAGTCAGGCGCGAGCACAGTAA-AGGGGCGGAGGTGGCAGCC
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30528136  89 + 171630274 ACCCTTAGTTCAGAGGGGTCTTCGTTCACTGGTGGGGACTTCTTCACCCTGGAGATGAGACATAAGAGTCAGGAG------------------CAGAGGTGGCAGCC
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           331583  89 +    515838 ACCCTTAGTTCAGAGAGGTCTTCGTTCACTGTTGGGGACTTCTTCTCTCTGGAGATGAGACATAAGAGTCAGGAG------------------CAGAGGTGGCAGCC
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     961713  89 -   1771730 ACCCTTAGTTCAGAGGGGTCTTCGTTCACTGTTGCGGACTTCTTCTCCCTGGAGATGAGACATAAGAGTCAGGAG------------------CAGAGGTGGCAGCC
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496901v1     146303  89 -    486031 ACCCTTAGTTCAGAGGGGTCTTCGTTCACTGGTGGGGACTTCTTCTCCCTGGAGATGAGACATAAGAGTCAGGAG------------------CAGAGGTGGCAGCC
i aotNan1.NW_018496901v1   C 0 I 1
s proCoq1.NW_012149775v1     395576 104 -   1411461 GCCCTTAGCTCAGAGGGTTCTCCATTCACCGGTGGGGGCTGCTTCTCCTTGGAGACCAGACAC-GGAGTCAAGAGCAGGCACAGCAA-AAGGGCAGAGGTGGCAG-C
i proCoq1.NW_012149775v1   C 0 I 1
s otoGar3.GL873550           389146 102 +  18854210 GCCCTTAGCTCAGAGGGGTCTCCGTTCACTTGTGGGG---ACTTCTCCTTGGAGACCAGACAC-AAAGTTAAGGGCAGGCACAGCAA-AGGGGCAGAGGTGGCAGTT
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58136584  77 -  94987271 ACCCTTAGGTT--GGGGGTCTCTGTTCCTT---------------------------AGACCT-GAAATCAAGAGCAGACTCAGCAATAGGAGGAAGAGTGATACCC
i mm10.chr17               C 0 I 123
s canFam3.chr35            26395522  74 +  26524999 --------------------GCCCTCCACCCGTGGGTGCTGCTCCTGCTTGGAGACCAGACAC-GGAGTCAAGAATGG----------GATGGCGGGGGTGGCAG--
i canFam3.chr35            C 0 C 0
e micMur3.chr6               431815 719 + 123392446 I

a score=51680.000000
s hg38.chr6_GL000254v2_alt  1543238 8 +   4827813 TGCACAGG
s panTro5.chr6             30413069 8 + 175400573 TGCACAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30647304 8 + 173848474 TGCACAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     355338 8 +   2037526 TGCACAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75018356 8 + 122973662 TGCACAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30908549 8 + 172585720 TGCACAGG
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30198084 8 - 170955103 TGCACGGG
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     446996 8 +   1495729 TGCACAGG
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     550600 8 -    863181 TGCACGGG
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29697314 8 -  71996105 TGCACAGG
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1     432841 8 -    735854 TGCACAGG
i manLeu1.NW_012107142v1   I 1 C 0
s colAng1.NW_012115577v1     339864 8 -   1829203 TGCACAGG
i colAng1.NW_012115577v1   I 1 C 0
s calJac3.chr4             30528226 4 + 171630274 TGTA----
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           331673 4 +    515838 TGTA----
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     961803 4 -   1771730 TGTA----
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496901v1     146393 4 -    486031 TGTA----
i aotNan1.NW_018496901v1   I 1 C 0
s proCoq1.NW_012149775v1     395681 8 -   1411461 TGTACAGG
i proCoq1.NW_012149775v1   I 1 I 354
s otoGar3.GL873550           389249 8 +  18854210 TGCATAGG
i otoGar3.GL873550         I 1 C 0
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e canFam3.chr35            26395596 0 +  26524999 C

a score=2237861.000000
s hg38.chr6_GL000254v2_alt  1543246 207 +   4827813 GCTGCCAGCTCCAGCACTCAGTCAATCGACAGACACCA-CCAGCTCCTACAAGGTtc-acacaatgt---caacgagaagaggaccttatagatctagtccaac--ttcctcattgtacagataaggatatgg-aaacccagaaagatTAGCTTGGTAGAGTGAAGAGCAGGACAGCCACTAGCCTATACCTTGCTGTTGGGAGAGCC------TCAAC---AC
s panTro5.chr6             30413077 207 + 175400573 GCTGCCAGCTCCAGCACTCAGTCAATCGACAGACACCA-CCAGCTCCTACAAGGCtc-acacaatgt---caaagagaagaggaccttatagatctagtccaac--tccctcattgtacagataaggatatgg-aaacccagaaagatTAGCTTGGTAGAGTGAAGAGcaggacagccactagcctataccttgctgttgggagagcc------tcaac---ac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30647312 207 + 173848474 GCTGCCAGCTCCAGCACTCAGTCAATCGACAGACACCA-CCAGCTCCTACAAGGCtc-acacaatgt---caaagagaagaggaccttatagatctagtccaac--tccctcattgtacagataaggatatgg-aaacccagaaagatTAGCTTGGTAGAGTGAAGAGCAGGACAGCCACTAGCCTATACCTTGCTGTTGGGAGAGCC------TCAAC---AC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     355346 206 +   2037526 GCTGCCAGCTCCAGCACTCAGTCAATCGACAGACACCA-CCAGCTCCTACAAGGCtc-acacaatgt---caaagagaagaggaccttatagatctagtccaac--tccctcattgtacagataaggatatgg-aaacccaggaagatTAGCTTGGTAGAGTGAAGAGCAGGACAGCCACTAGCCTGTA-CTTGCTGTTGGGAGAGCC------TCAAC---AC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75018364 207 + 122973662 GCTGCCAGCTCCAGCACTCAGTCAATCTATAAACACCA-CCAGCTTCTACAAGGTtc-acacaatgt---caaagagaagaggaccttatagatctagtccgac--tccctcatagtacagataaggatatgg-aaacccagaaagatTAGCTTGGTAGAGTGAAGAGCAGGACAGCCACTAGCCTATACCTTGCTATTGGGAGAGCC------TCAAC---AC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30908557 207 + 172585720 GCTGCCAGCTCCAGCACTCAGTCAATCTACAGACACCA-CCAGCTCCTACAAGGCtc-acacaatgt---caaagggaaggggaccttacagatctagtccaac--tccctcattgtacagataaggatatgg-aaacccagaaagatTAGCTTGGTAGAGTGAAGAGCAGGACTGCCAATAGCCTATACCTTCCTGTTGGGAGAGCC------TCAAC---AC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30198092 207 - 170955103 GCTGCCAGCTCCAGCACTCAGTCAATCTATAGACACCA-CCAGCTCCTACAAGGCtc-acacaatgt---caaagggaaggggaccttacagatctagtccaac--tcccgcattgtacagataaggatatgg-aaacccagaaagatTAGCTTGGTAGAGTGAAGAGCAGGACTGCTAATAGCCTATACCTTCCTACTGGGAGAGCC------TCAAC---AC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     447004 207 +   1495729 GCTGCCAGCTCCAGCACTCAGTCAATCTATAGACACCA-CCAGCTCCTACAAGGCtc-acacaatgt---caaagggaaggggaccttacagatctagtccaac--tcccgcattgtacagataaggatatgg-aaacccagaaagatTAGCTTGGTAGAGTGAAGAGCAGGACTGCTAATAGCCTATACCTTCCTACTGGGAGAGCC------TCAAC---AC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     550608 207 -    863181 GCTGCCAGCTCCAGCACTCAGTCAATCTACAGACACCA-CCAGCTCCTACAAGGCtc-acacaatgt---caaagggaaggggaccttacagatctagtccaac--tccttcgttgtacagataaggatatgg-aaacccagaaagatTAGCTTGGTAGAGTGAAGAGCAGGACTGCCAATAGCTCATACCTTCCTGTTGGGAGAGCC------TCAAC---AC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29697322 207 -  71996105 GCTGCCAGCTCCAGCACTCAGTCAATCTACAGACACCA-CCAGCTCCTACAAGGCtc-acacaatgt---caaagggaaggggaccttacagatctagtccaac--tccctcattgtacagataaggatatgg-aaacccagaaagatTAGCTTGGTAGAGTGAAGAGCAGGACTGCCAATAGCTTATACCTTCCTGTTGGGAGAGCC------TCAAC---AC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     432849 207 -    735854 GCTGCCAGCTCCAGCACTCAGTCAATCTACAGACACCA-CCAGCTCCTACAAGGCtc-acacaatgt---caaagggaaggggaccttacagatctagtccaac--tccctcattgtacagataaggatatgg-aaacccagaaagatTAGCTTGGTAGAGTAAAGAGCAGGACTGCCAATAGCTTATACCTTCCTACTGGGAGAGCC------TCAAC---AC
i manLeu1.NW_012107142v1   C 0 I 250
s colAng1.NW_012115577v1     339872 207 -   1829203 GCTGCCAGCTCCAGCACTCAGTCAATCTACAGACACCA-CCAGCTCCCACAAGGCtc-acacaatgt---caaagggaaggggaccttacagatctagtccaac--tccctcattgtacagataagcatatgg-aaacccagaaagatTATCTTGGTAGAGTGAAGAGCAGGACTGCCAATAGCCTATACCTTCCTGTTGGGAGAGCC------Tcaac---ac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30528230 207 + 171630274 GCTGCCAGACACAGCACTCGATCAATCTACCGACACTG-CCAGCTCCTACAGGGCtc-acataatgt---caaagggaaggggcgcttacagaagtagcccaac--tccctcactgtatagataaggaaatgg-aatcccagaaagattaaTTTGGTAGAGTGAAGAGCAGGGCTGCCACTAGCCTATACCTTGTTGTTGGGAGAGCC------TCAAC---AC
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           331677 208 +    515838 GCTGCCAGGCACAGCACTCAGTCAATCTCCCGACACCA-CCAGCTCCTACAGGGCtc-acacaatgt---caaagggaaggggcccttacagaactagcccaac--tccttcattgtacaggtaagaaaatggaaatcccagaaagattaacttgGTAGAGTGAAGAGCAGGGCTGCCACTAGCCTATACCTTGCTGTTGGGGGAGCC------TGAGC---AC
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     961807 209 -   1771730 GCTGCCAGGCACAGCACTCAGTCAATCTACCGACACCA-CCAGCTCCTACAGGGCtc-acacaatga---caaagggaaggggaccttacagaactagcccaac--tccctcattgtacagataaggaaatgg-aatcccagaaagattaacttgGTAGAGTGAAGAGCAGGGCAGCCACTAGCCTATACCTTGCTGTTGGGAGACCC----TTTCAAC---AC
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496901v1     146397 207 -    486031 GCTGCCAGGCACAGCACTCAGTCAATCTACCGACACCA-CCAGCTCCTACAGGGCtc-acacaatgt---caaagggaaggggcccttacagaactagcccaac--tccctcattgtacagataaggaaatgg-aatcccagaaagatTAGCTTGGTAGAGTGAAGAGCAGGGCTGCCACTAGCCTATACCTTGCTGTTGGGAGAGCC------TCAAC---AC
i aotNan1.NW_018496901v1   C 0 I 1
s otoGar3.GL873550           389257 211 +  18854210 GCTGTCGGCCCCTGCAC----TCAACCTACAGACATCA-CCTGCTCCTACAAGGCTC-CCACaatgt---cagaatcaaagggaccttactgatctagtccaacctcccctcattttacagataaggaaatca-aagccaggagagCGCAGCTTGGTAGAATGAAGAGTAGCACTGCTACTCACTCGTACCTTGCTGCTGGGAAAGCAGTCCTGTTAAC---AT
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26395596 186 +  26524999 ----------------GTCATTTGAGCCACAGACACAACCCAGTACCTACGAGGCTTGGCCCAAGGCGGACAGGGAGGACGGGAGCT-----GGCTAGCC--AC--ACCTGCACTGTTCAG--AGGCACAGGG----CTCAGAGAGGGTGCTCTGGCTGCCTGAGGAGCACAGC-ACCACCCCCATGGGGGTTGCTGGGGAAGCAGCC------TTGCCCAGAC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     395689 354 -   1411461 I

a score=-9047.000000
s hg38.chr6_GL000254v2_alt  1543453 3 +   4827813 -CCT
s panTro5.chr6             30413284 3 + 175400573 -cct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30647519 3 + 173848474 -CCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     355552 3 +   2037526 -CCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75018571 3 + 122973662 -CCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30908764 2 + 172585720 -TC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30198299 2 - 170955103 -CC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     447211 2 +   1495729 -CC-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     550815 2 -    863181 -CC-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29697529 2 -  71996105 -CC-
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     340079 2 -   1829203 -cc-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30528438 2 + 171630274 -CT-
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           331886 2 +    515838 -CT-
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     962017 2 -   1771730 -CT-
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496901v1     146605 2 -    486031 -CT-
i aotNan1.NW_018496901v1   I 1 C 0
s otoGar3.GL873550           389469 2 +  18854210 -CT-
i otoGar3.GL873550         I 1 C 0
s canFam3.chr35            26395782 3 +  26524999 CCT-
i canFam3.chr35            C 0 C 0
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     395689 354 -   1411461 I
e manLeu1.NW_012107142v1     433056 250 -    735854 I

a score=79443.000000
s hg38.chr6_GL000254v2_alt  1543456 9 +   4827813 TTCCTTCTA
s panTro5.chr6             30413287 9 + 175400573 ttccttcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30647522 9 + 173848474 TTCCTTCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     355555 9 +   2037526 TTCCTTCTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75018574 9 + 122973662 TTCCTTCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30908766 9 + 172585720 TTCCTTCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30198301 9 - 170955103 TTCCTTCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     447213 9 +   1495729 TTCCTTCTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     550817 9 -    863181 TTCCTTCTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29697531 9 -  71996105 TTCCTTCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     433306 9 -    735854 ttccttcta
i manLeu1.NW_012107142v1   I 250 C 0
s colAng1.NW_012115577v1     340081 9 -   1829203 ttccttcta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30528440 5 + 171630274 ----TTCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           331888 5 +    515838 ----TTCCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     962019 5 -   1771730 ----ttcta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     146607 5 -    486031 ----ttcca
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           389471 9 +  18854210 TTCCTGCCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26395785 9 +  26524999 GTCCTCCCA
i canFam3.chr35            C 0 I 225
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     395689 354 -   1411461 I

a score=1228468.000000
s hg38.chr6_GL000254v2_alt  1543465 117 +   4827813 TCTGTTGG-AAAATCGCTGTAATGCACCAACTGTAATA-AAAAATCTCTCActacctgctgggaaactcataatgatacatatataaatctacaatgtctactgtggacacagtgctcc
s panTro5.chr6             30413296 117 + 175400573 tctgttgg-aaaatcgctgtaatGCACCAACTGTAATA-AAAAAtcactcactacctgctgggaaactcataatgatacatatataaatctacaatgtctactgtggacacagtgctcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30647531 117 + 173848474 TCTGTTGG-AAAATCGCTGTAATGCACCAACTGTAATA-AAAAAtcactcactacctgctgggaaactcataatgatacatatataaatctacaatgtctactgtggacacagtgctcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     355564 117 +   2037526 TCTGTTGG-AAAATCGCTGTAATGCACCAACTGTAATA-AAAAAtcactcactacctgctgggaaactcataatgatacacatataaatctacaatgtctactgtggacacagtgctcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75018583 118 + 122973662 TCTGTTGG-AAAATCGCTGTAATGCACCAACTATAATAGAAAAATCACTCActacctgctgggaaactcataatgatacatatacaaatctacaacgtctactgtggacacagtgctcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30908775 117 + 172585720 TCTGTTGG-AAAATCGCTGTAATGCACC-ACTGTAGCAGAAAAAtcactcactacctactgggaaactcataatgacacacatataaatctacaacgtctactgtggatacagtgctcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30198310 117 - 170955103 TCTGTTGG-AAAATCGCTGTAATGCACC-ACTGTAGCAGAAAAATCACTCActacctactgggaaactcataatgacacatatataaatctacaatgtctactgtggatacagtgctcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     447222 118 +   1495729 TCTGTTGG-AAAATCGCTGTAATGCACCAACTGTAGCAGAAAAATCACTCActacctactgggaaactcataatgacacatatataaatctacaatgtctactgtggacacagtgctcc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     550826 118 -    863181 TCTGTTGG-AAAATCGCTGTAATGCACCAACTGTAGCAGAAAAAtcactcactacctggtgggaaactcataatgacacacatataaatctacaacgtctactgtggacacagtgctcc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29697540 118 -  71996105 TCTGTTGG-AAAATCGCTGTAATGCACCAACTGTAGCAGAAAAATCACTCActacctactgggaaactcataatgacacacatataaatctgcaacgtctactgtggacacagtgctcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     433315 118 -    735854 tctgttgg-aaaatcgctgtaatgcaccaactgtagcagaaaaatcactcactacctggtgggaaactcataatgacacacatataaatcTACAACGTCTACTGTGGACACAGTGCTCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     340090 118 -   1829203 tctgttgg-agaattgctgtaatgcaccaactgtaacagaaaaatcactcactacctgctgggaaactcataatgacacatatataaatctacaatgtctactgtggacacagtgctcc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30528445 118 + 171630274 TCTGTTGG-AAAATCGCTGTAATGCACCAACTGTAATAGAACAATCTCTTACTACCTGCTGGGAAACTCATAACAATACATATATAAATCTACCATGTCTACTGTGGACACAATGCTCC
i calJac3.chr4             C 0 I 18
s saiBol1.JH378341           331893 116 +    515838 TCTGTTGG-AAAATCACTGTAATGCACCAACTGTAAcagaacaatctcttactacttgctgggaaactc--aacaatacatatataaatctactatgtctaccatggacacagttctcc
i saiBol1.JH378341         C 0 I 18
s cebCap1.NW_016107755v1     962024 118 -   1771730 tctgttgg-aaaatcgctgtagtgcaccaactgtaacagaacaatctcttactacttgctgggaaactcgtaacaatacatatataaatcTACAATGCCTACCGTAGACACAGTGCTCC
i cebCap1.NW_016107755v1   C 0 I 18
s aotNan1.NW_018496901v1     146612 118 -    486031 tctgttgg-aaaatcgctgtaatgcaccaactgtaatagaataatctcttactacttgctgggaaactcgtaacaatacatatataaatcTACAATGTCTACTGTGGACACACTGCTCC
i aotNan1.NW_018496901v1   C 0 I 18
s otoGar3.GL873550           389480 117 +  18854210 TCTGTTGGAAAAATCACTCTAATGTACCAATTGTCAAAGAATAATCGATCACTACCTGCTAGAAA--CCACCATAATAAATACGTAAAAACACAGTGTCTACCTTGTACATGGTACTCC
i otoGar3.GL873550         C 0 I 152
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     395689 354 -   1411461 I
e canFam3.chr35            26395794 225 +  26524999 I

a score=468938.000000
s hg38.chr6_GL000254v2_alt  1543582 46 +   4827813 ttcactcaactgtgcaaagcacaagacacacgagcagtcatggggg
s panTro5.chr6             30413413 46 + 175400573 ttcactcaactgtgcaaagcacaacacacacgagcagtcatggggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30647648 46 + 173848474 ttcactcaactgtgcaaagcacaagacacacgagcagtcatggggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     355681 45 +   2037526 ttcactcaactgtgcaaagcacaagacacacgagcagtcat-gggg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75018701 46 + 122973662 ttcactcaactgtgcaaagcacaagacacacgagcagtcatggggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30908892 46 + 172585720 ttcactcagctgtgcaaagcacaagacacacaactggtcatggggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30198427 46 - 170955103 ttcactcaactgtgcaaagcacaagacacacaactggtcatggggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     447340 46 +   1495729 ttcactcaactgtgcaaagcacaagacacacaattggtcatggggg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     550944 46 -    863181 ttcactcaactgtgcaaagtacaagacacacaaatggtcatggggg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29697658 46 -  71996105 ttcactcaactgtgcaaagcacaagacacacaactggtcatggggg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     433433 46 -    735854 TTCACTCAACTGTGCAAAGTACAAGACACACAAATGGTCATGGGGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     340208 46 -   1829203 ttcacgcaactgtgcaaagcacaagacacacaactggtcatggggg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30528581 46 + 171630274 CTCACTCAATTATGCAAAGCACAAGACACATGACCAGTCACGGGGG
i calJac3.chr4             I 18 C 0
s saiBol1.JH378341           332027 46 +    515838 ctcactcaattatgcaaagcagAAGACACATGACCAGCCATGGGGG
i saiBol1.JH378341         I 18 C 0
s cebCap1.NW_016107755v1     962160 46 -   1771730 CTCACTCAATTACGCAAAGCACAAGACACATGACCAGCCATGGGGG
i cebCap1.NW_016107755v1   I 18 C 0
s aotNan1.NW_018496901v1     146748 46 -    486031 CTCACTCAACTATGCAAAGCACAAGACACATGACCAGTCATGGGGG
i aotNan1.NW_018496901v1   I 18 C 0
s otoGar3.GL873550           389749 46 +  18854210 ctcccttagttgtgtagtacacaagatgcacaaccagtcatggGTG
i otoGar3.GL873550         I 152 I 162
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     395689 354 -   1411461 I
e canFam3.chr35            26395794 225 +  26524999 I

a score=114903.000000
s hg38.chr6_GL000254v2_alt  1543628 12 +   4827813 tcctgACAGAGT
s panTro5.chr6             30413459 12 + 175400573 tcctgACAGAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30647694 12 + 173848474 tcctgACAGAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     355726 12 +   2037526 tcctgACAGAGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75018747 12 + 122973662 tcctgACAGAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30908938 12 + 172585720 tcctgATACAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30198473 12 - 170955103 tcctgATACAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     447386 12 +   1495729 tcctgATACAGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     550990 12 -    863181 tcctgATACAGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29697704 12 -  71996105 tcctgATACAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     433479 12 -    735854 TCCTGATACAGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     340254 12 -   1829203 tcctgATACAGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30528627 12 + 171630274 TCCTGACAGAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           332073 12 +    515838 TCCTGACAGAGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     962206 12 -   1771730 TCCTGACAGAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     146794 12 -    486031 TCCTGACAGAGT
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     395689 354 -   1411461 I
e canFam3.chr35            26395794 225 +  26524999 I
e otoGar3.GL873550           389795 162 +  18854210 I

a score=50871.000000
s hg38.chr6_GL000254v2_alt  1543640 12 +   4827813 CAAGAGACCGCC
s panTro5.chr6             30413471 12 + 175400573 CAAGAGACCGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30647706 12 + 173848474 CAAGAGACCGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     355738 12 +   2037526 CAAGAGACTGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75018759 11 + 122973662 CAAGAGACC-CC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30908950 11 + 172585720 CAAGAGACC-CC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30198485 11 - 170955103 CAAGAGACC-CC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     447398 11 +   1495729 CAAGAGACC-CC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     551002 11 -    863181 CAAGAGATC-CC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29697716 11 -  71996105 CAAGAGACC-CC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     433491 11 -    735854 CAAGAGATT-CC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     340266 11 -   1829203 CAAGAGACT-CC
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     395689 354 -   1411461 I
e canFam3.chr35            26395794 225 +  26524999 I
e saiBol1.JH378341           332085  0 +    515838 C
e otoGar3.GL873550           389795 162 +  18854210 I
e aotNan1.NW_018496901v1     146806  0 -    486031 C
e cebCap1.NW_016107755v1     962218  0 -   1771730 C
e calJac3.chr4             30528639  0 + 171630274 C

a score=1046595.000000
s hg38.chr6_GL000254v2_alt  1543652 195 +   4827813 CGtttt--------ttttttttggtttttt----tttttttgagatggagtcttactctgtcgcccaggctggagtgcagtggcgcgatctcagctcactgcaacctccgcctcccaggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcacccaccaccacacct-ggctaattttttgtatttttagt
s panTro5.chr6             30413483 193 + 175400573 CGtttt--------ttttttt--gtttttt----tttttttgagatggagtcttactctctcgcccaggctggagtgcaatggcgtgatctcagctcactgcaacctccgccttccaggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgcccaccaccaagcct-ggctaattttttgtatttttagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30647718 189 + 173848474 CGtttt--------tttt-----ggttttt----tttttgt-agatggagtcttactctgtcgcccaggctggagtgcaatggcgtgatctcagctcactgcaacctccgccttccaggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgcccaccaccaagcct-ggctaattttttgtatttttagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     355750 193 +   2037526 CGtttt--------ttttttg--gtttttt----tttttttgagatggagtcttactctgtcgcccaggctggagtgcaatggcgtgatctcagctcactgcaacctccgccttccaggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgcccaccaccacgcct-ggctaattttttgtatttttagt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75018770 196 + 122973662 CGtttttg-----cttttttt--ttttttt----tttttttgaggtggagtcttgctctgtcgcccaggctggagtacagtggcgtgatctcagctcactgcaagctccgcctcccgggttcacaccattctcctgcttcagcctcccaagtagctgggactacaggcgcccgccaccacgcct-ggctaattttttgtatttttagt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30908961 186 + 172585720 Ctt---------------ttt--ttttttt----tttttttgagatggagtcttgctctctcactcaggctggagtgcagtggcaggatcttggctcactgcaacctccgcctcccaggttcacgccattctcctgcctcagcctcccaagtagctggaactacaggcacctgccaccacgccc-ggctaattttttgtgtttttagt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30198496 186 - 170955103 CAA---------------ttt--ttttttt----tttttttgagatggagtcttgctctgtcgctcaggttggagtgcagtggcaggatcttggctcactgcaacctccgcctcccaggttcacgccattctcctgcctcagcctcccaagtagctggaactacaggcgcccgccaccacacct-agctaattttttgtgtttttagt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     447409 193 +   1495729 CAAttt--------ttttttt--ttttttt----tttttttgagatggagtcttgctctgtcgctcaggttggagtgcagtggcaggatcttggctcactgcaacctccgcctcccaggttcacgccattctcctgcctcagcctcccaagtagctggaactacaggcgcccgcaaccacacct-ggctaattttttgtgtttttagt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     551013 183 -    863181 CCC--------------------CCttttt----tttttgtgagatggagttttgctctgttgctcaggctggagtgcagtggcaggatcttggctcactgcaacctccgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctggaactacaggtgcccgccaccacgccc-ggctaattttttgtgtttttagt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29697727 191 -  71996105 CAt--t--------ttttttt--ttttttt----tttttttgagatggagtcttgctctgtcactcaggctggagtgcagtggcaggatcttggctcactgcaatctccgcctcccaggttcacgccattctcctgcctcagccttccaagtagctggaactacaggcacctgccaccacgccc-agctaattttttgtgtttttagt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     433502 183 -    735854 C------------------CC--Ctttttt----tttttttgagatggagttttgctctgttgctcaggctggagtgcagtggcaggatcttggctcactgcaacctccgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctggaactacaggtgcccgccaccacgccc-ggctaattttttgtgtttttagt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     340277 187 -   1829203 CCC--------------CCCC--ttttttt----tttttttgagatggagtcttgctctgtcactcaggctggagtgcagtggcacgatctcggctcactgcaacctccgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctggaactacaggcgcctgccaccacgccc-ggctaattttttgtgtttttagt
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           389957 197 +  18854210 ------TGTTTTTCTTTtttg--tttttttttggtttttttgagacagaatctctctatgtcatcctgggtagagtgctatggt---atcacaactcacagcaacctcaaactcttgggcttaagcgattctctcacctcagcctcccaagtagctgagactacaggtgtctaccacaacacccaggctattttgttgttgttgttgt
i otoGar3.GL873550         I 162 T 304
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     395689 354 -   1411461 I
e canFam3.chr35            26395794 225 +  26524999 I
e saiBol1.JH378341           332085   0 +    515838 C
e aotNan1.NW_018496901v1     146806   0 -    486031 C
e cebCap1.NW_016107755v1     962218   0 -   1771730 C
e calJac3.chr4             30528639   0 + 171630274 C

a score=542646.000000
s hg38.chr6_GL000254v2_alt  1543847 114 +   4827813 agagacggggtttcaccgtgttag----------ccaggatggtcttgatctcccgacctcgtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcacctggc
s panTro5.chr6             30413676 114 + 175400573 agagacggggtttcaccgtgttag----------ccaggatggtctcgatctcctgacctcgtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcacccggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30647907 114 + 173848474 agagacggggtttcaccgtgttag----------ccaggatggtctcgatctcctgacctcgtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcacccggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     355943 114 +   2037526 agagacggggtttcaccgtgttag----------ccaggatggtctcgatctcctgacctcgcgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcacccggc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75018966 114 + 122973662 agagacggggtttcaccgtgttag----------ccaggatggtctcgatctcccgacctcctgatccgcctgcctcagcctcccaaagtgctgggattacaggcatgagccactgcacccggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30909147  88 + 172585720 agagacggggtttcaccgtgttag----------ccaggatggtctcgatcacctgatctcgtgatccacccacctcggccccccaaagtgctga--------------------------gGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30198682 114 - 170955103 agagacagggtttcaccgtgttag----------ccaggatggtctcgatctcctgatctcgtaatctgcccgtctcggcctcccaaagtgctgagattacagacgtgagccaccgcgcccggA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     447602 112 +   1495729 agagacagggtttcaccgtgttag----------ccaggatggtctcgatcacctgatctcgtgatccgccc--ctcggcctcccaaagtgctgagattacagacgtgagccaccgcgcccggA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     551196 124 -    863181 agagacggggtttcaccatgttagctaggatggtctaggatggtctagatcgcctgatctcgtgatccgcccgcctcggcctcccaaagtgctgagattacaggcgtgagccactgTAATTGTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29697918  90 -  71996105 agagacggggtttcaccgtgttag----------ccaggatggtctcgatcgcctgatctcgtgatccacccacctcggcctcccaaagtgctgagGCCA------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     433685 124 -    735854 agagacggggtttcaccatgttagctaggatggtctaggatggtctagatcgcctgatctcgtgatccgcccgcctcggcctcccaaagtgctgagattacaggcgtgagccactgTAATTGTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     340464 114 -   1829203 agagacagggtttcaccgtgttag----------ccaggatggtctcgatctcctgatctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggc
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     395689 354 -   1411461 I
e canFam3.chr35            26395794 225 +  26524999 I
e saiBol1.JH378341           332085   0 +    515838 C
e otoGar3.GL873550           390154 304 +  18854210 T
e aotNan1.NW_018496901v1     146806   0 -    486031 C
e cebCap1.NW_016107755v1     962218   0 -   1771730 C
e calJac3.chr4             30528639   0 + 171630274 C

a score=11076.000000
s hg38.chr6_GL000254v2_alt  1543961 2 +   4827813 cA
s panTro5.chr6             30413790 2 + 175400573 cA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30648021 2 + 173848474 cA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     356057 2 +   2037526 cA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75019080 2 + 122973662 cA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30909235 2 + 172585720 CA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30198796 2 - 170955103 CA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     447714 2 +   1495729 CA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     551320 2 -    863181 TT
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     433809 2 -    735854 TT
i manLeu1.NW_012107142v1   C 0 I 5
s colAng1.NW_012115577v1     340578 2 -   1829203 cA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30528639 2 + 171630274 CA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           332085 2 +    515838 CA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     962218 2 -   1771730 CA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     146806 2 -    486031 CA
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     395689 354 -   1411461 I
e canFam3.chr35            26395794 225 +  26524999 I
e otoGar3.GL873550           390154 304 +  18854210 T
e chlSab2.chr17            29698008 0 -  71996105 C

a score=68677.000000
s hg38.chr6_GL000254v2_alt  1543963 9 +   4827813 AGAGACCCC
s panTro5.chr6             30413792 9 + 175400573 AGAGACCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30648023 9 + 173848474 AGAGACCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     356059 9 +   2037526 AGAGACCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75019082 9 + 122973662 AGAGACCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30909237 9 + 172585720 AGAGACCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30198798 9 - 170955103 AGAGACCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     447716 9 +   1495729 AGAGACCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     551322 5 -    863181 GA----TTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29698008 9 -  71996105 AGAGACCCC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     340580 9 -   1829203 AGAGACCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30528641 9 + 171630274 AGAGACCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           332087 9 +    515838 AGAGACCCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     962220 9 -   1771730 AGAGACCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     146808 9 -    486031 AGAGACCCC
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     395689 354 -   1411461 I
e canFam3.chr35            26395794 225 +  26524999 I
e otoGar3.GL873550           390154 304 +  18854210 T
e manLeu1.NW_012107142v1     433811 5 -    735854 I

a score=1000856.000000
s hg38.chr6_GL000254v2_alt  1543972 100 +   4827813 TTTTGTTTGCTCCTCAAGGTTTCAGGTTTCAAGAACTAAGAGAGGGCAATGTGACAtggctcaccctgtaaatccaacactttgggtggctgaggcagga
s panTro5.chr6             30413801 100 + 175400573 TTTTGTTTGCTCCTCAAGGTTTCAGGTTTCAAGAACTAAGAGAGGGCAATGTGACAtggctcaccctgtaaatccaacactttgggtggctgaggcagga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30648032 100 + 173848474 TTTTGTTTGCTCCTCAAGGTTTCAGGTTTCAAGAACTAAGAGAGGGCAATGTGACAtggctcaccctgtaaatccaacactttgggtggctgaggcagga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     356068 100 +   2037526 TTTTGTTTGCTCCTCAAGGTTTCAGGTTTCAAGAACTAAGAGAGGGCAATGTGACAtggctcaccctgtaaatccaacactttgggtggctgaggcagga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75019091 100 + 122973662 TTTTGTTTGCTCCTCAAGGTTTCAGTTTTCAAGAACTAAGAGAGGGCAATGTGACAtggctcaccctgtaaatccaacactttgggtggctgaggcagga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30909246 100 + 172585720 TTTTGTTTGCTCCTCAAGGTTTCAGGTTTCAAGAACTAAGAGAGGGTAGCGTGACAtggctcaccctgtaaacctaacactttgggtggctgaggcagga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30198807 100 - 170955103 TTTTGTTTGCTCCTCAAGGTTTCAGGTTTCAAGAACTAAGAGAGGGCAGCGTGACAtggctcaccctgtaaacctaacactttgagtggctgaggcagga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     447725 100 +   1495729 TTTTGTTTGCTCCTCAAGGTTTCAGGTTTCAAGAACTAAGAGAGGGCAGCGTGACAGggctcaccctgtaaacctaacactttgagtggctgaggcagga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     551327 100 -    863181 TGTTGTTTGCTCCTCAAGGTTTCAGGTTTCAAGAACCAAGAGAGGGCAGCGTGACAtggctcaccctgtaaacctaacactttgggtggctgaggcagga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29698017 100 -  71996105 TTTTGTTTGCTCCTCAAGGTTTCAGGTTTCAAGAACTAAGAGAGGGCAGCGTGACAtggctcaccctgtaaacctaacactgtgggtggctgaggcagga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     433816 100 -    735854 TGTTGTTTGCTCCTCAAGGTTTCAGGTTTCAAGAACCAAGAGAGGGCAGCGTGACAtggctcaccctgtaaacctaacactttgggtggctgaggcagga
i manLeu1.NW_012107142v1   I 5 M 2210
s colAng1.NW_012115577v1     340589 100 -   1829203 CTTTGTTTGCTCCTCAGGGTTTCAGGTTTCAAGAACTAAGAGAGGGCAGCATAACAtggctcaccctgtaaacctaacactttgggtggctgaggcagga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30528650 100 + 171630274 TTTTGTTTGTTCCTCAAGCTTTCAGGTTTCAAGAACTACGAGAGGGCAGCATGCCAtggctcaccctataaacccaatactttgggtggctgaagcagga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           332096  97 +    515838 TTTCGTTTGTTCCTCAAGCTTTCAGGTTTCAAGAACTACGAGAGGGCAGCATGCCAtggctcaccct---aacccaacattttgggtggctaaggcagga
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     962229  99 -   1771730 TTTCGTTTATTCCTCAAGCTTTCAGGTTTCAAGAACTACGAG-GGGCAGCATGCCAtggctcaccctgtaaacccaacacttcgggtggctaaggcagga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     146817 100 -    486031 TTTTGTTTGTTCCTCAAGCTTTCAGGTTTCAAGAACTACGAGAGGGCAGCATGCCAtggctcaccctataaacccaacactttgggtggctaaggcagga
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     395689 354 -   1411461 I
e canFam3.chr35            26395794 225 +  26524999 I
e otoGar3.GL873550           390154 304 +  18854210 T

a score=635706.000000
s hg38.chr6_GL000254v2_alt  1544072 71 +   4827813 ggatcacttgaaccgaggagtttgaaaccagcctcagcaacatagtgagaccctgtctcaact-aaaaaaat
s panTro5.chr6             30413901 71 + 175400573 ggatcagttgaaccgaggagtttgaaaccagcctcagcaacatagtgagaccctgtctcaact-aaaaaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30648132 71 + 173848474 ggatcagttgaaccgaggagtttgaaaccagcctcagcaacatagtgagaccctgtctcaact-aaaaaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     356168 71 +   2037526 ggatcacttgaaccgaggagtttgaaaccagcctcagcaacatagtgagaccctgtctcaact-aaaaacat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75019191 71 + 122973662 ggatcacttgaaccaaggagtttgaaaccagcctcagcaacatagtgagaccctgtctctact-aaaaaaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30909346 71 + 172585720 cgatcacttgaacccaggagtctgaaaccagcctcagcaacatagtgagatcctgtctctact-aaaaaaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30198907 71 - 170955103 cgatcacttgaacccaggagtctgaaaccagcctcagcaacatagtgagatcctgtctctact-aaaaaaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     447825 71 +   1495729 cgatcacttgaacccaggagtctgaaaccagcctcagcaacatagtgagatcctgtctctact-aaaaaaat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     551427 72 -    863181 tgatcacttgaacccaggagtctgaaaccagcctcagcaacatagtgagatcctgtctctactaaaaaaaat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29698117 71 -  71996105 cgatcacttgaacccaggagtttgaaaccagcctcagcaacatagtgagatcctgtctctact-aaaaaaat
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     340689 71 -   1829203 cgatcacctgaacccaggagtttgaaaccagcctcagcaacatagtgagatcctgtctctact-aaaaaaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30528750 71 + 171630274 ggatcacttgaacccaggagtttgaaaccagccttagcaacatagtgagaccctgtctctact-aaaaaaat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           332193 71 +    515838 ggatcacttgaacccaggagtttgaaaccagcctcagcaacatagtgagaccctgtctctact-aaaaaaag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     962328 71 -   1771730 ggatcacttgaacccaggagtttgaaaccagcctcagcaacatagtgagaccctgtctctact-aaaaaaat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     146917 71 -    486031 ggatcacttgaacccaggagtttgaaaccagcctcaacaacatagtgagaccctgtctctact-aaaaaaat
i aotNan1.NW_018496901v1   C 0 I 53
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     395689 354 -   1411461 I
e canFam3.chr35            26395794 225 +  26524999 I
e otoGar3.GL873550           390154 304 +  18854210 T
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=329039.000000
s hg38.chr6_GL000254v2_alt  1544143 59 +   4827813 --ttaaaaattttttaaaataccccagtgtagtagcatgcatctgtagtctcagctactga
s panTro5.chr6             30413972 59 + 175400573 --ttaaaaattttaaaaaataccccagtgtagtagcgtacatttgtagtctcagctactga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30648203 59 + 173848474 --ttaaaaattttaaaaaataccccagtgtagtagcatacatttgtagtctcagctactga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     356239 59 +   2037526 --ttaaaaatttttaaaaataccccagtgtagtagcgtacatctgtagtctcagctactga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75019262 59 + 122973662 --ttaaaaatttttaaaaataccccagtgtagtagcgtacatctgtagtctcagctactga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30909417 59 + 172585720 --ttaaaaatttttaaatatacctcagtgtagtagcatacatctgtagtttcagctactga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30198978 59 - 170955103 --ttaaaaatttttaaatatacctcagtgtagtagcatacatctgtagtttcagctactga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     447896 59 +   1495729 --ttaaaatttttttaacatacctcagtgtagtagcatacatctgtagtttcagctactga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     551499 59 -    863181 --ttaagaatttttaaaaatatctcagtgtagtagcatacatctgtagtttcagctactga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29698188 59 -  71996105 --tttaaaatttttaaaaatacctcagtgtagtagcatacatctgtagtttcagctactga
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     340760 59 -   1829203 --ttaaaaattttaaaaaatacctcagtggagtagcatacatctgtagtttcagctactga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30528821 53 + 171630274 gaaaataaattttaaaag----cccagtatggtagaatatgtctgtagtcctagctg----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           332264 53 +    515838 ttgtaaaaatttaaaaag----ccctgtatggtagaatatatctatagtcccagcta----
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     962399 51 -   1771730 --aaaaaaattttaaaag----cccagtatggtagaatatgtctgtagtcccagctg----
i cebCap1.NW_016107755v1   C 0 C 0
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     395689 354 -   1411461 I
e canFam3.chr35            26395794 225 +  26524999 I
e otoGar3.GL873550           390154 304 +  18854210 T
e aotNan1.NW_018496901v1     146988 53 -    486031 I
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=949066.000000
s hg38.chr6_GL000254v2_alt  1544202 145 +   4827813 ggaggctgtggcagaaggattacttgaatctgggaggtggaggctacagtgagccatgattgtactactacactccagactgggcaacagaataagaga--ctgtctcaaaacaaacaaaaaaccagaaaaCATTAAAAAACAAA------CA
s panTro5.chr6             30414031 141 + 175400573 ggaggctgtggcagaaggattacttgaatctgggaggtggaggctacagtgagccatgattgtaccactacactccagactgggcaacagaataagaga--ctgtctca----aaacagaaaaccagaaaacattaaaaaacaaa------CA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30648262 141 + 173848474 ggaggctgtggcagaaggattacttgaatctgggaggtggaggctacagtgagccatgattgtaccactacactccagactgggcaacagaataagaga--ctgtctca----aaacagaaaaccagaaaacattaaaaaacaaa------CA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     356298 141 +   2037526 ggaggctgtggcagaaggattacttgaatctgggaggtggaggctacagtgagccatgattgtaccactacactccagactgggcaacagaataagaga--ctgtctca----aaacaaaaaaccagaaaacattaaaaaacaaa------CA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75019321 137 + 122973662 ggagcctgtggcaggaggattacttgaatctgggaggtggaggctacagtgagccatgattgtaccactacactccagactaggcaacagaataagaga--ctgtcttaaaacaaacaaaaaaccagaaaaCATT--------AA------CA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30909476 141 + 172585720 ggaggctgtggcaggaggattacttgaatctgggaggtggaggctacagtgagacatgattgtgccactacactccagattgagcaacagaataagaga--ctgtctcaaaacaaacaaaaaaccagaaaacattaaa----aaa------aa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30199037 141 - 170955103 ggcggctgtggcaggaggattacttgaatctgggaggtggaggctacagtgagacatgattgtgccactacactccagattgagcaacagaataagaga--ctgtctcaaaacaaacaaaaaaccagaaaacattaaa----aaa------aa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     447955 135 +   1495729 ggcggctgtggcaggaggattacttgaatctgggaggtggaggctacagtgagacatgattgtgccactacactccagattgagcaacagaataagaga--ctgtctcaaaacaaacaaaaaaccagaaaacatt----------------aa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     551558 138 -    863181 ggaggctgtggcaggaggattacttgaatctgggaggtggaggctacagtgagacatgattgtgccactacactccagattgagcaacagaataagaga--ctatctcaaaacaaacaaaaaaccagaaaacatt-------aaa------aa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29698247 134 -  71996105 ggaggctgtggcaggaggattacttgaatctgggaggtggaggctacagtgagacatgattgtgccactacactccagattgagcaacagaatacgaga--ctgtctcaaaacaaacaaaaaaccagaaaacaat-----------------a
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     340819 136 -   1829203 ggaggctgtggcaggaggattacttgaatctgggaggtggaggctacagtgagacatgactatgccactatactccagattgagcaacagaataagaga--ctgtctcaaaacaaacaaaaaaccagaaaacatt---------a------aa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30528874 143 + 171630274 gaaggccacagttggaggatttcttgaatct-ggaggtggaagctaccgtgagctatgattctgccactatactccagcctggacaacagaatgagagaccccatcacaaaacaa---------caaaagacattaaaaaaaaaaaaaaaCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           332317 139 +    515838 gaaggccacagcaggaggattccttgaatct-ggaggtggaagctaccgtgagctatgatttcgccactatactccagcctgggcaacagaatgagagaccccatctcaaaacaa---------caaaagacattaaaaaaaaaaaa----aa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     962450 135 -   1771730 gagggccacagcagggggattccttgaatct-ggaggtggaagctaccgtgagctatgattctgccactatactccagcctgggcaacagaatgagagatcccatctcaaaacaa---------caaaaggcattaaaaaaaa--------aa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     147041 135 -    486031 gaaggccacagcaggaggattccttgaatcc-ggaggtagaagctaccgtgagctatgattccgccactataccccagcctgggcaacagaatgagagaccccatctcaaaacaa---------caaaagacatttaaaaaaa--------aa
i aotNan1.NW_018496901v1   I 53 C 0
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     395689 354 -   1411461 I
e canFam3.chr35            26395794 225 +  26524999 I
e otoGar3.GL873550           390154 304 +  18854210 T
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=54213.000000
s hg38.chr6_GL000254v2_alt  1544347 9 +   4827813 AACAAACAG
s panTro5.chr6             30414172 9 + 175400573 AACAAAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30648403 9 + 173848474 AACAAAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     356439 9 +   2037526 AACAAAGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75019458 9 + 122973662 AACAAAGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30909617 9 + 172585720 aaaAAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30199178 9 - 170955103 aaaAAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     448090 9 +   1495729 aaaaaaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     551696 9 -    863181 aaaaaaAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29698381 9 -  71996105 aaaaaaaaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     340955 9 -   1829203 aaaaaaaaA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30529017 9 + 171630274 AACTAAGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           332456 9 +    515838 aaCTAAGGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     962585 9 -   1771730 aGCTAAGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     147176 9 -    486031 aaCTAAGAG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           389850 9 +  18854210 AACCAAGAG
i otoGar3.GL873550         T 304 C 0
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     395689 354 -   1411461 I
e canFam3.chr35            26395794 225 +  26524999 I
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=948988.000000
s hg38.chr6_GL000254v2_alt  1544356 103 +   4827813 CACTGAGGTTCTTTACCAAAACTCGAGAAGCATCAGGAAGCTTCAGGAGTCTGACTGTCAGCATTTCCCTTTGTGAGTATTTCCCTGGGCTGTTCTATAGTTT
s panTro5.chr6             30414181 103 + 175400573 TACTGAGGTTCTTTACCAAAACTTGAGAAGCATCGGGAAGCTTCAGGAGTCTGACTGTCAGCATTTCCCTTTGTGAGTATTTCCCTGGGCTGTTCTATAGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30648412 103 + 173848474 TACTGAGGTTCTTTACCAAAACTTGAGAAGCATCGGGAAGCTTCAGGAGTCTGACTGTCAGCATTTCCCTTTGTGAGTATTTCCCTGGGCTGTTCTATAGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     356448 103 +   2037526 CACTGAGGTTCTTTACCAAAACTTGAGAAGCATCAGGAAGCTTCAGGAGTCTGACTGTCAGCATTTCCCTTTGTGAGTATTTCCCTGGGCTGTTCTACAGTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75019467 103 + 122973662 CACTGAGGTTCTTTACCAAAACTCCAGAAGCATCAGGAAGCTTCAGTAGTCTGACTGTCAGCATTTCCCTTTGTGAGTATTTCCCTGGGCTGTTCTATAGTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30909626 103 + 172585720 AACTAAGGTTCTTTACCAAAACTCGAGAAGCATCAGGAAGCTTCAGGAGTCTGACTGTCAGCATTTCCCTTTATAAGTGTTTCCCTGGGCTATTCTATAGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30199187 103 - 170955103 AACGAAGGTTCTTTACCAAAACTCAAGAAGCATCAGGAAGCTTCAGGAGTCTGACTGTCAGCATTTCCCTTTATAAGTGTTTCCCTGGGCTATTCTATAGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     448099 103 +   1495729 AACTAAGGTTCTTTACCAAAACTCAAGAAGCATCAGGAAGCTTCAGGAGTCTGACTGTCAGCATTTCCCTTTATAAGTGTTTCCCTGGGCTATTCTATAGCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     551705 103 -    863181 AACTAAGGTTCTTTACCAAAACTCGAGAAGCATCAGGAAGCTTCAGGAGTCTGACTGTCAGCATTTCCCTTTATAAGTGTTTCCCTGGGCTATTCTATAGCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29698390 103 -  71996105 aACTAAGGTTCTTTACCAAAACTCGAGAAGCATCAGGAAGCTTCAGGAGTCTGACTGTCAGCATTTCCCTTTATAAGTGTTTCCCTGGGCTCTTCTATAGCTT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     340964 103 -   1829203 AACTAAGATTCTTCACCAAAACTCGAGAAGCATCAGGAAGCTTCAGGAGTCTGACTGTCAGCATTTCCCTTCCTAAGTGTTTCCCTGGGCTGTTCTATAGCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30529026 103 + 171630274 TACTGAGGTTCTTTACCAAAATTTAAGAAGCATCAGGAAGAGTCAGAAGTCTGAATGTCAGTGTTTCCCTTCATGAGTGTTTCCCTGGGCTGTTCTATAGTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           332465 103 +    515838 TACTGAGGTTCTTTACCAAAATTTAAGAAGCATCAGGAAGATTCAGGAGTCTGAGTGTCAGTGTTTCCCTTCATGAGTGTTTCCCTGGGCTGTTCTACAGTTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     962594 103 -   1771730 TACTGAGGTTCTTTACCAAAATTTAAGAAGCATCAGGAAGATTCAGGAGTCTGAGTGTCAGTGTTTCCCTTCATGAGTGTTTCCCTGGGCTGCTCTACAGTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     147185  97 -    486031 TACTGAGGTTCTTTACCAAAATTTAAGAAGCATCAGGAAGATGCAG------GAGTGTCAGTGTTTCCCTTCATGAGTGTTTCCCTGGGCTGTTCTACAGTTT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           389859  98 +  18854210 CACTGAGATTCTTTACCAAAACTCAAGGAGCATAAAGAGGCT---AACTACTGATACTACATACTTTCTTTAAT--GTGTTTCCCTCGACTATTATGTAGCTT
i otoGar3.GL873550         C 0 I 593
s canFam3.chr35            26396019  92 +  26524999 CACTGACATCCTTAACCAAGAC-----------CAGGGCACATGGAGAGCCTTAGCTCTGGCATCGCCCCTGAGAGGCGTTTCCTTGGGCTGAGCTGTGGTTT
i canFam3.chr35            I 225 C 0
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     395689 354 -   1411461 I
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=241759.000000
s hg38.chr6_GL000254v2_alt  1544459 25 +   4827813 -GGGTTTAATTTGCTTCCCCTAGAAG
s panTro5.chr6             30414284 25 + 175400573 -GGGTTTAATTTGCTTCCCCTAGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30648515 25 + 173848474 -GGGTTTAATTTGCTTCCCCTAGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     356551 25 +   2037526 -GGGTTTAATTTGCTTCCCCTAGAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75019570 25 + 122973662 -GGGTTTAATTTGCTTCCCCTAGAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30909729 25 + 172585720 -GGGCTTAATTTGCTTCCCCTAGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30199290 25 - 170955103 -GGGCTTAATTTGCTTCCCCTAGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     448202 25 +   1495729 -GGGCTTAATTTGCTTCCCCTAGAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     551808 25 -    863181 -GGGCTTAATTTGCTTCCCCTAGAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29698493 25 -  71996105 -GGGCTTAATTTGCTTCCCCTAGAAG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     341067 25 -   1829203 -GGGCTTAATTTGCTTCCCCTAAAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30529129 25 + 171630274 -GGGTCTAATTTGCTTCCTCTAGAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           332568 25 +    515838 -GGGTCTAATTTGCTTCCCCTAGAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     962697 24 -   1771730 -GGGTCTAA-TTGCTTCCCCTAGAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     147282 25 -    486031 -GGGTCTAATTTGCTTCCCCTAGAAG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           390550 24 +  18854210 -gagccTGGTTTACTTCCCTTAACA-
i otoGar3.GL873550         I 593 C 0
s canFam3.chr35            26396111 26 +  26524999 TGGTTGCAGTCCTGTTCCACCAGCAG
i canFam3.chr35            C 0 I 74
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     395689 354 -   1411461 I
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=76665.000000
s hg38.chr6_GL000254v2_alt  1544484 7 +   4827813 GCTGGAC
s panTro5.chr6             30414309 7 + 175400573 GCTGGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30648540 7 + 173848474 GCTGGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     356576 7 +   2037526 GCTGGAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75019595 7 + 122973662 GCTGGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30909754 7 + 172585720 GCTGGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30199315 7 - 170955103 GCTGGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     448227 7 +   1495729 GCTGGAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     551833 7 -    863181 GCTGGAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29698518 7 -  71996105 GCTGGAC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     341092 7 -   1829203 GATGGAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30529154 7 + 171630274 GCTGGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           332593 7 +    515838 GCTAGAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     962721 7 -   1771730 GCTGGAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     147307 7 -    486031 GCTGGAC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           390574 7 +  18854210 GCTGGAC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     395689 354 -   1411461 I
e canFam3.chr35            26396137 74 +  26524999 I
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=530746.000000
s hg38.chr6_GL000254v2_alt  1544491 52 +   4827813 TCTAAACACAGCCCTCCAGAGGAGCACAGCTTAGCCTCAGTGGACTTGTTCT
s panTro5.chr6             30414316 52 + 175400573 TCTAAACACAGCCCTCCAGAGGAGCACAGCTTAGCCTCAGTGGACTTGTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30648547 52 + 173848474 TCTAAACACAGCCCTCCAGAGGAGCACAGCTTAGCCTCAGTGGACTTGTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     356583 52 +   2037526 TCTAAACACAGCCCTCCAGAGGAGCACAGCTTAGCCTCAGTGGACTTGTTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75019602 52 + 122973662 TCTAAACTCAGCCTTCCAGAGGAGCACAGCTTAGCCTCAGTGGACTTGTTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30909761 52 + 172585720 CTTAGACTCAGCCCTCCAGAGGGGCACAGCTTAGCCTCAATGGACTTGTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30199322 52 - 170955103 CCTAGACTCAGCCCTCCAGAGGGGCACAGCTTAGCTTCAGTGGACTTGTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     448234 52 +   1495729 CCTAGACTCAGCCCTCCAGAGGGGCACAGCTTAGCTTCATTGGACTTGTTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     551840 52 -    863181 CCTAGACTCAGCCCTCCAGAGGGGCACAGCTTAGCCTCAGTGGACTTGTTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29698525 52 -  71996105 CCTAGACTCAGCCCTCCAGAGGGGCACAGCTTAGCCTCAGTGGACTTGTTCT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     341099 52 -   1829203 CCTAAACTCAGCCCTCCAGAGGGGCACAGCTTAGCCTCAATGGACTTGTTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30529161 52 + 171630274 TCTAAACTCAGCCCTCCAGCAGAGCACATCTTAGCCTCAATGGGCTTGTTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           332600 52 +    515838 TCTAAACTCAGCCCTCCAGGGGAGCACATCTTAGCCTCAATGGGCTTGTTCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     962728 52 -   1771730 TCTAAACTCAGCCCTCCAGCGGAGCACATCTTAGCCTCAATGGGCTTGTTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     147314 52 -    486031 TCTAAACTCAGCCCTCCAGCGGAGCACATCTTAGCCTCAATGGGCTTGTTCT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     396043 51 -   1411461 TCTAAACTCAGC-CCCCAGCGGAGCACAGCTTGGCCACAGTGGACTCGTTCT
i proCoq1.NW_012149775v1   I 354 I 52
s otoGar3.GL873550           390581 52 +  18854210 TCTAAATTCAGTGCCCCAAATAAGCAGAGGCTCACCACAATAAACTCATTCT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e canFam3.chr35            26396137 74 +  26524999 I
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=262198.000000
s hg38.chr6_GL000254v2_alt  1544543 36 +   4827813 TGGCTGTAACTGCCTCGTCTAGA-----------------------TGGCAGGAATCCT
s panTro5.chr6             30414368 36 + 175400573 TGGCTGTAACTGCCTCGTCTAGA-----------------------TGGCAGGAATCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30648599 36 + 173848474 TGGCTGTAACTGCCTCGTCTAGA-----------------------TGGCAGGAATCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     356635 36 +   2037526 TGGCTGTAACTGCCTCGTCTAGA-----------------------TGGCAGGAATCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75019654 36 + 122973662 TGGCTGTAAGTGCCTCGTCTAGC-----------------------TGGGAGGAATCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30909813 36 + 172585720 TGGCTGTAACTGCCTCGTCTAGC-----------------------TGGGAGGAATCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30199374 36 - 170955103 TGGCTGTAACTGCCTCGTCTAGC-----------------------TGGGAGGAATCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     448286 36 +   1495729 TGGCTGTAACTGCCTCGTCTAGC-----------------------TGGGAGGAATCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     551892 36 -    863181 TGGCTGTAACTGCCTCGTCTAGC-----------------------TGGGAGGAATCAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29698577 36 -  71996105 TGGCTGTAACTGCCTCGTCTAGC-----------------------TGGGAGGAATCCT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     341151 36 -   1829203 TGGCTGTAACTGCCTCGTCTAGC-----------------------TGGGAGGAATCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30529213 58 + 171630274 TGGCTGTGACTGCCGCATCTAGCTC-GCTCCTGAGGGAAACCAGCATGGGAGGAACCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           332652 58 +    515838 TGGCTGTGACTGCCCCATCTAGCTT-GCTCCTGAAGGAAACCAGCATGGGAGGAACCCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     962780 58 -   1771730 TGGCTGTGACTTCCCTGTCTAGCTC-GCTCCTGAGGGAAACCAGCATGGGAGGAACCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     147366 58 -    486031 TGGCTGTGACTGCCCTGTCTAGCTC-ACTCCTGAGGGAAACCGGCATGGGAGGAACCCT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           390633 56 +  18854210 CAACTGCAACTCCTCCATCTAGCTTAGCTCAGCAGGGAAACCAACATGGAAGAACT---
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     396094 52 -   1411461 I
e canFam3.chr35            26396137 74 +  26524999 I
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=248610.000000
s hg38.chr6_GL000254v2_alt  1544579 21 +   4827813 CAGGTGGCTGTGGCTGCTATG
s panTro5.chr6             30414404 21 + 175400573 CAGGTGGCTGTGGCTGCTATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30648635 21 + 173848474 CAGGTGGCTGTGGCTGCTATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     356671 21 +   2037526 CAGGTGGCTGTGGCTGCTATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75019690 21 + 122973662 CAGGTGGCTGTGGCTGCTATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30909849 21 + 172585720 CAGGTGGCTGTGGCTGCTATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30199410 21 - 170955103 CAGGTGGCTGTGGCTGCTATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     448322 21 +   1495729 CAGGTGGCTGTGGCTGCTATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     551928 21 -    863181 CAGGTGGCTGTGGCTGCTATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29698613 21 -  71996105 CAGGTGGCTGTGGCTGCTATG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     341187 21 -   1829203 CAGGTGGCTGTGGCTGCTATG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30529271 21 + 171630274 CAGGTGGCTCTGGCGGCTATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           332710 21 +    515838 CAGGTGGCAGTGGTGGCTATG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     962838 21 -   1771730 CAGGTGGCTGTGGCGGCTATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     147424 21 -    486031 CAGGTGGCTGTGGCGGCTATG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     396146 21 -   1411461 CAGGTGGCTGTGGCTGCTATG
i proCoq1.NW_012149775v1   I 52 I 504
s otoGar3.GL873550           390689 21 +  18854210 TAGGTGGCTGTGGCTGTGATG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e canFam3.chr35            26396137 74 +  26524999 I
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=19125.000000
s hg38.chr6_GL000254v2_alt  1544600 2 +   4827813 TG
s panTro5.chr6             30414425 2 + 175400573 TG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30648656 2 + 173848474 TG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     356692 2 +   2037526 TG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75019711 2 + 122973662 TG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30909870 2 + 172585720 TG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30199431 2 - 170955103 TG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     448343 2 +   1495729 TG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     551949 2 -    863181 TG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29698634 2 -  71996105 TG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     341208 2 -   1829203 TG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30529292 2 + 171630274 TG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           332731 2 +    515838 TG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     962859 2 -   1771730 TG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     147445 2 -    486031 TG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           390710 2 +  18854210 CA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     396167 504 -   1411461 I
e canFam3.chr35            26396137 74 +  26524999 I
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=946901.000000
s hg38.chr6_GL000254v2_alt  1544602  95 +   4827813 CT-GTGAGGCCTTGGCTTGTACAGGGAGCGGGGAC------------------ACACAG-----AAAGGACTCTGCTTCTGTTTACCTTTGTAGTCCTGACCCAGTTCCAGGCTGAGGT
s panTro5.chr6             30414427  95 + 175400573 CT-GTGAGGCCTTGCCTTGTACAGGGAGCAGGGAC------------------ACACAG-----AAAGGACTCTGCTTCTGTTTACCTTTGTAGTCCTGGCCCAGTTCcaggctgaggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30648658  95 + 173848474 CT-GTGAGGCCTTGGCTTGTACAGGGAGCAGGGAC------------------ACACAG-----AAAGGACTCTGCTTCTGTTTACCTTTGTAGTCCTGGCCCAGTTCcaggctgaggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     356694  95 +   2037526 CT-GTGAGGCCTTGGCTTGCACAGGGAGCGGGGAC------------------ACACAG-----AAAGGACTCTGCTTCTGTTTACCTTTGTAGTCCTGGCCCAGTTCcaggctgaggt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75019713  95 + 122973662 CT-GTGAGGCCTTGGCTTGTACAGGGAGCGGGGAC------------------ACACAG-----AAAGGACTCTGCTTCTGTTTACCTTTGTAGTCCTGGCCCAGTTCcaggctgaggt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30909872  95 + 172585720 CT-GTGAGGCCTTGGCTTGTACCGGGAGCGGGGAC------------------ACACAG-----AAAGGACTCTGCTTCTGTTTACCTTTGTAGTCCTGGCCCAGTTCcagtctgaggt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30199433  95 - 170955103 CT-GTGAGGCCTTGGCTTGTACAGGGAGCGGGGAC------------------ACACAG-----AAAGGACTCTGCTTCTGTTTACCTTTGTAGTCCTGGCCCAGTTCCAGTCTGAGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     448345  95 +   1495729 CT-GTGAGGCCTTGGCTTGTACAGGGAGCGGGGAC------------------ACACAG-----AAAGGACTCTGCTTCTGTTTACCTTTGTAGTCCTGGCCCAGTTCCAGTCTGAGGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     551951  95 -    863181 CT-GTGAGGCCTTGGCTTGTACAGGGAGCGGGGAC------------------ACACAG-----AAAGGACTCTGCTTCTGTTTACCTTTGTAGTCCTGGCCCAGTTCcagtctgaggt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29698636  95 -  71996105 CT-GTGAGGCCTTGGCTTGTACACGGAGCGGGGAC------------------ACACAG-----AAAGGACTCTGCTTCTGTTTACCTTTGTAGTCCTGGCCCAGTTCcagtctgaggt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     341210  95 -   1829203 CT-GTGAGGCCTTGGCTTGTACAGGGAGCAGGGAC------------------ACACAG-----AAAGGACTCTGCTTCTGTTTACCTTTGTAGTCCTGGCCCAGTTCCAGTCTGAGGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30529294  95 + 171630274 CT-GTGAAGCCTTGGCTTGTACAGGGAATGTGGAC------------------ACACAG-----AAAGGACTCTGCTTCTGTTTACCTTTGTAGTCCTGTCCCAGTTCCTGTCTGAAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           332733  95 +    515838 CT-GTGAAGCCTTGGCGTGTACAGGGAATGTGGAC------------------ACACAG-----AAGGGACTCTGCTTCTGTTTACCTTTGTAGTCCTGTCCCAGTTCCAGTCTGAAGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     962861  95 -   1771730 CT-GTGAAGCCTTGGCTTGTACAGGGAATGTGGAC------------------ACACAG-----AAAGGACTCTGCTTCTGTTTACCTTTGTAGTCCCGTCCCAGTTCTTGTCTGAAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     147447  95 -    486031 CT-GTGAAGCCTTGGCTTGTACAGGGAATGTGGAC------------------ACACAG-----AAAGGACTCTGCTTCTGTTTACCTTTGTAGTCCTGTCTCAGTTCCTGTCTGAAGT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           390712 101 +  18854210 CTAAGGAGGCCTTTGCCCTTATAGGGAGCATAGAA------------------GCTAAGCAGATAAAGGACTCTGCTCCTGGTTACCTTTGCAGCCCAGACCTACTGCCTGTCTGAGGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26396211 110 +  26524999 CT-GCGAGGTCCAGTGCCTCAGAGGGAGGGAGGGAAGGAGCACGCATGAGAGGACACAG-----GATGGACTCTG-GACCATGTCCCTTGGCAG--CAGATCCACCTCCTGCCTGGGGT
i canFam3.chr35            I 74 C 0
e micMur3.chr6               431815 719 + 123392446 I
e mm10.chr17               58136661 123 -  94987271 I
e proCoq1.NW_012149775v1     396167 504 -   1411461 I
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=727111.000000
s hg38.chr6_GL000254v2_alt  1544697 73 +   4827813 TATGAGCCTCAGCACATCTAACCCAAGAGCAGCCTCctgcccctgactctgtgtgacaatacagaagtcactt
s panTro5.chr6             30414522 73 + 175400573 gatgagcctcagtacatctaacccaagagcagcctcctgcccctgactctgtgtgacaatacagaagtcactt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30648753 73 + 173848474 gatgagcctcagtacatctaacccaagagcagcctcctgcccctgactctgtgtgacaatacagaagtcactt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     356789 73 +   2037526 tatgagcctcagtacatctaacccaagaccagcctcctgaccctgactctgtgtgacaatacagaagtcactt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75019808 73 + 122973662 tatgagcctcagtacatctaacccaagagcagcctcctgcccctgactctgtgtgacaatacagaagtcactt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30909967 73 + 172585720 tatgagcctcagtacatctaacccaagagcagcctcctgcccctgactctgtgtgacactacagaagtcactt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30199528 73 - 170955103 TATGAGCCTCAGTACATCTAACCCAAGAGCAGCCTCctgcccctgactgtgtgtgacactacagaagtcactt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     448440 73 +   1495729 TATCAGCCTCAGTACATCTAACCCAAGAGCAGCCTCctgcccctgactgtgtgtgacactacagaagtcactt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     552046 73 -    863181 tatgagcctcagtacatctaacccaagagcagcctcctgcccctgactctgtgcgacaatacagaagtcactt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29698731 73 -  71996105 tatgagcctcagtacatctaacccaagagcagcctcctgcccctgactctgtgtgacaatacagaagtcactt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     341305 73 -   1829203 TATGAGCCTCAGTACGTCTACCCCAAGAGCAGCCTCctgcccctgactctgtgtgacaatacagaagtcactt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30529389 73 + 171630274 TATAAGCCTCAGCACATCTAACCCAAGAGCAGCCTCctgcccctgactctgcctgacaataaagaagtcactt
i calJac3.chr4             C 0 I 307
s saiBol1.JH378341           332828 73 +    515838 TATGAGCCTCAGCACATCTAACCCAAGAGCAGCCTCctgcccctaactctacctgacaataaagtagtcactt
i saiBol1.JH378341         C 0 I 300
s cebCap1.NW_016107755v1     962956 73 -   1771730 TATGAGCCTCAGCACATCTAACCTAAGAGCAGCCTCctgcccctgactctgcctgacaataaagaagtcactt
i cebCap1.NW_016107755v1   C 0 I 312
s aotNan1.NW_018496901v1     147542 73 -    486031 TATGAGCCTCAGCACATCTAACCCAAGAGCAGCCTCctgtccctgactctgcctgacaataaagaagtcactt
i aotNan1.NW_018496901v1   C 0 I 310
s otoGar3.GL873550           390813 60 +  18854210 TATAAGCCTCAGCATATCTGACCCAAGAGCAAC-------CCCTGACT----ATAACAAT--AGAAGTAATTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58136784 58 -  94987271 TATCaatctttgcagctctggccc-------tcttcctgcccctg--------tgacgacagaaagctcactt
i mm10.chr17               I 123 C 0
s canFam3.chr35            26396321 69 +  26524999 CAGGAGCCTCCATGCAGCAAATGCCACAGCTGT-GCCTGCC---GAATCTGCAGGACAGCAGAaacctcgttt
i canFam3.chr35            C 0 C 0
e micMur3.chr6               431815 719 + 123392446 I
e proCoq1.NW_012149775v1     396167 504 -   1411461 I
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=542184.000000
s hg38.chr6_GL000254v2_alt  1544770 52 +   4827813 aagta--ctgagcctcagtgtatccatctgtaaaatggg---aagagtgatacttac
s panTro5.chr6             30414595 52 + 175400573 aagta--ctgagcctcagtgtatccatctgtaaaatggg---aagagtgatacttac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30648826 52 + 173848474 aagta--ctgagcctcagtgtatccatctgtaaaatggg---aagagtgatacttac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     356862 52 +   2037526 aagta--ctgagcctcagtgtatccatctgtaaaatggg---aagagtgatacttac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75019881 52 + 122973662 aagta--ctgagcctcagtgtatccatctgtaaaatggg---aagagtgagacttac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30910040 52 + 172585720 aagta--ctgagcctcagtgtatccatctgtaaaatggg---aagagtgatacttac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30199601 52 - 170955103 aagta--ctgagcctcagtgtatccatctgtaaaatggg---aagagtgatacttac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     448513 52 +   1495729 aagta--ctgagcctcagtgtatccatctgtaaaatggg---aagagtgatacttac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     552119 52 -    863181 aagta--ctgagcctcagtgtatccatctgtaaaatggg---aacagtgatacttac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29698804 52 -  71996105 aagta--ctgagcctcagtgtatccatctgtaaaatggg---aagagtgatacttac
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     341378 52 -   1829203 aagta--ctgagcctcagtgtatccatctataaaatggg---aagagtgatacttac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30529769 49 + 171630274 aagta--ctgagcctcagtgtatccatctataaaatagg------agtaatacttac
i calJac3.chr4             I 307 C 0
s saiBol1.JH378341           333201 49 +    515838 aaGTA--ctgagcctcagtgtatccatctgtaaaatagg------agtgatacttac
i saiBol1.JH378341         I 300 C 0
s cebCap1.NW_016107755v1     963341 49 -   1771730 aagta--ctgagcctcagtgtatccatctgtaaaacagg------aatgatacttac
i cebCap1.NW_016107755v1   I 312 C 0
s aotNan1.NW_018496901v1     147925 49 -    486031 aagta--ctgagcctcagtgtatccatctgtaaaatagg------agtgatacttac
i aotNan1.NW_018496901v1   I 310 C 0
s otoGar3.GL873550           390873 48 +  18854210 AAGTG--TAgaacctcagtttattcatctataaaatggg---aagactaatat----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58136842 57 -  94987271 gagtactctgagtctcagcttatccatccataaaatgggagaaagagagaagcctac
i mm10.chr17               C 0 C 0
s canFam3.chr35            26396390 32 +  26524999 ----------------------atcatccataaaatggg---gacagcgatacttac
i canFam3.chr35            C 0 C 0
e micMur3.chr6               431815 719 + 123392446 I
e proCoq1.NW_012149775v1     396167 504 -   1411461 I
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=2007808.000000
s hg38.chr6_GL000254v2_alt  1544822 192 +   4827813 ctttaagggtttctaagcagg--tcatgtgaaagaattatgggaaaagtgctaagcacaagcctggtacacag----ACGGAAATCTAGGAGAGAACCCACAACCCCTGGTTTCCAAATCCAGTGAGTGTCCAAACCACAA-ACAAAGAG-----TTAAATTCA-AAAGTGGCAGCAAAAGAGGAAGTGAGCAGAACCAGCCACA
s panTro5.chr6             30414647 192 + 175400573 ctttaagggtttctaagcagg--tcatgtgaaacaattatgggaaaagtgctaagcacaagcctggtacacag----ACAGAAATCTAGGAGAGAACCCACAACCCCTGGTTTCCAAATCCAGTGAGTGTCCAAACCACAA-ACAAAGAG-----TTAAATTCA-AAAGTGGCAGCAAAAGAGGAAGTGAGTAGAACCAGCCACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30648878 188 + 173848474 ctttaagggtttctaagcagg--tcatgtgaaacaattatgggaaaagtgctaagcacaagcctggtacaca--------gaaaTCTAGGAGAGAACCCACAACCCCTGGTTTCCAAATCCAGTGAGTGTCCAAACCACAA-ACAAAGAG-----TTAAATTCA-AAAGTGGCAGCAAAAGAGGAAGTGAGTAGAACCAGCCACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     356914 184 +   2037526 ctttaagggtttctaagcagg--tcatgtgaaagaattacgggaaaagtgctaagcacaagcctgg-----------ACGGAAATCTAGGAGA-AACCCACAACCCCTGGTTTCCAAATCCAGTGAGTGTCCAAACCACAA-ACAAAGAG-----TTAAATTCA-AAAGTGGCAGCAAAAGAGGAAGTGAGCAGAACCAGCCACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75019933 192 + 122973662 ctttaagggtttctaagcagg--tcatatgaaagaactatgggaaaagtactaagcacaagcctggtacacag----ACGGAAATGTAGGACAGAACCCACAATCCCTGGTTTCCAAATCCAGTGAGTGTCCAAACCACAA-ACAAAGAG-----TTAAATTCA-AAAGTGGCAGCAAGAGAGGAAGTGAGCAGAACCAGCCACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30910092 188 + 172585720 cttcaagggtttctaagcagg--tcatgtgaaagaattatggtaaaagtactaagtacaagcctggtacacag----ACGGAAATCTAGGAGAGAACCCAGAACCCCTGGTTTCCAAATCTAGTGAGTGTCCAAACC-----ACAAAGAG-----TTAAATTCA-AAAGTGGCAGCAAGAGAGGAAGTGAGCAGAACCAGCCACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30199653 188 - 170955103 cttcaagggtttctaagcagg--tcatgtgaaagaattatggtaaaagtactaagtacgagcctggtacacag----ATGGAAATCTAGGAGAGAACCCAGAACCCCTGGTTTCCAAATCTAGTGAGTGTCCAAACC-----ACAAAGAG-----TTAAATTCA-AAAGTGGCAGCAAGAGAGGAAGTGAGCAGAACCAGCCACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     448565 188 +   1495729 cttcaagggtttctaagcagg--tcatgtgaaagaattatggtaaaagtactaagtacgagcctggtacacag----ACGGAAATCTAGGAGAGAACCCAGAACCCCTGGTTTCCAAATCTAGTGAGTGTCCAAACC-----ACAAAGAG-----TTAAATTCA-AAAGTGGCAGCAAGAGAGGAAGTGAGCAGAACCAGCCACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     552171 192 -    863181 cttcaagggtttctaagcagg--tcatgtgaaagaattatggtaaaagtactaagtacaagcctggtacacag----ACGGAAATCTAGGAGAGAACCCAGAACCCCTGGTTTCCAAATCTAGTGAGTGTCCAAACCACAA-ACAAAGAG-----TTAAATTCA-AAAGTGGCAGCAAGAGAGGAAGTGAGCAGAACCAGCCACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29698856 188 -  71996105 cttcaagggtttctaagcagg--tcatgtgaaagaattatggtaaaagtactaagtacaagcctggtacacag----ACGGAAATCTAGGAGAGAACCCAGAACCCCTGGTTTCCAAATCTAATGAGTGTCCAAACC-----ATAAAGAG-----TTAAATTCA-AAAGTGGCAGCAAGAGAGGAAGTGAGCAGAACCAGCCACA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     341430 188 -   1829203 cttcaagggtttctaagcagg--tcatgtgaaagaattatggtaaaagtactaagtacaagcctggtacacag----ACGGAAATCTAGGAGAGAACCCAGAACCCCTGGTTTCCAAATCTAGTGAGTGTCCAAACC-----ACAAAGAG-----TTAAATTCA-AAAGTGGCAGCAAGAGAAGAAGTGAGCAGAACCAGCCACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30529818 186 + 171630274 cttcaagggtttctaagcagg--tcatgtgaaagaactatggtaaaagtactaagcacaagcctggt--acaG----ATGGAAATCTAGTAGAGAACTCAGAACCCCTGGTTCCCAAATCCAGTAAGTGTTCAAACC-----ACAAAGAG-----TTAAATTCA-AAAGTGGCAGCAAGAGAAGAAGTGAGCAGAACCAGTCACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           333250 186 +    515838 tttcaagggtttctaagcagg--tcatgtgaaagaattatggtaaaagtactaagcacaagcctagt--acaG----ATAGAAATCTAGCAGAGAACTCAGAACCCCTGGTTCCCAAATCCAGTAAGTGTTCAAACC-----ACAAAGAG-----TTAAATTCA-AAAGTGGCAGCAAGAGAAGAAGTGAGCAGAACCAGTCACG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     963390 186 -   1771730 cttcaagggtttctaagcagg--tcatgtgaaagaattatggtaaaagtactaagcacgagcctagt--acaG----ATGGAAATCTAGTAGGGAACTCAGAACCCCTGGTTCCCAAATCCAGTAAGTGTTCAAACC-----ACAAAGAG-----TTAAATTCA-AAAGTGGCAGCAAGAGAAGAAGTGAGTAGAACCAGTCACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     147974 186 -    486031 cttcaaggatttctaagcagg--tcatgtgacagaattatggtaaaagtactaagcacaagcctggt--acaG----ATGGAAATCTAGTTGAGAACTCAGAACCCCTGGTTTCCAAATCCAGTAAGTGTTCAAACC-----ACAAAGAG-----TCAAATTCA-AAAGTGGCAGCAAGAGAAGAAGTGAGCAGAACCAGTCACA
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               432534 183 + 123392446 CTTCAAGAGTTCCTGAGCAGG--TCATGTGAAAGAATTATGTTGAAAGTACTA------AGCCTGGTACACAG----AAAGAAATCTAGAAGAAA---CAGGGCCTTTGATTCCCAAATCCAGCAAGTGCTCGAATC-----ACAAAGAAAGAGTTCAAATTC--AAAGTGGCAGCAAGGGAGGGAGTGAGCAGAAACAGCCACA
i micMur3.chr6             I 719 I 10836
s otoGar3.GL873550           390921 175 +  18854210 cttcaagagtttctaagcagg--tcatgtgaaagaattctgttcaaagtgcta------aacctggtacacag----aaagAAATCCAGGAAAAT---CTAGAACCT---TTCCCAAATCCAGTGAGTGTTCAAATC-----ACAAAGAG-----TTGAAATG--AAAGTGATAGCAAGAGAGGAAGTAAGCAAAAGCAGACACA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58136899 165 -  94987271 ----aggggcttctaaacagaattcttctaaaagagttctgttagaaacactaggcataggcctggttcatag----aaagcaatcCAGGAGAGAACCCAAAGCCCTGGCTCCTCAA--CCACTG---GTTGAGATC-------CAAGAC-----CTGAAACTG-AAAGCAGTATCAAGA--------ATGCAGGGTCC------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26396422 177 +  26524999 -ttcatgggtt---------g--ctatgtgactgagtc----tgagattacgg----caagcgcagtgcatagGGGTGGGGAACTCTAGGACAGG--TTGGGACCCTCAGTTTCCAAGTCCCATGAGAGCTCAAACTGGAACACAGCAAG-----GTGGGAACATACAGTGGCAGCAAGAGAGGGAGTGAGGACAGGTGGCCAC-
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012149775v1     396167 504 -   1411461 I
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=2038372.000000
s hg38.chr6_GL000254v2_alt  1545014 201 +   4827813 GTGACACACGTGCTACAGAGT-----TCAACAACATCGTCACAGGGCAGTACCTGGAGGACTTGCTCTCCTATAGATCCATGGAAGGCAACTACAGCAGCGCTGGGAAGACAACCAG---CAGGGCACAGAGGTGACTGCGAGGCTGGAATGAAGCAACCTGAATTACAGGCAAATCAATACTATTAATGATTATGTATGGTG-AAAGTC
s panTro5.chr6             30414839 201 + 175400573 GTGACACACGTGCTACAGAGT-----TCAACAACATCGTCACGGGGCAGTACCTGGAGGACTTGCTCTCCTATAGATCCATGGAAGGCAACTAGAGCAGCGCTGGGAAGACAACCAG---CAGGGCACAGAGGTGACTGCGAGGCTGGAATGAAGCAACCTGAATTACAGGCAAATCAATACTATTAATGATTATGTATGGTG-AAAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30649066 201 + 173848474 GTGACACACGTGCTACAGAGT-----TCAACAACATCGTCACGGGGCAGTACCTGGAGGACTTGCTCTCCTATAGATCCATGGAAGGCAACTAGAGCAGCGCTGGGAAGACAACCAG---CAGGGCACAGAGGTGACTGCGAGGCTGGAATGAAGCAACCTGAATTACAGGCAAATCAATACTATTAATGATTATGTATGGTG-AAAGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     357098 201 +   2037526 GTGACACACGTGCTACAGAGT-----TCAACAACATCGTCACGGGGCAGTACCTGGAGGACTTGCTCTCCTATAGATCCATGGAAGGCAACTAGAGCAGCGCTGGGAAGACAACCAG---CAGGGCACAGAGGTGACTGCGAGGCTGGAATGAAGCAACCTGAATTACAGGCAAATCAATACTATTAATGATTATGTATGGTG-AAAGTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75020125 201 + 122973662 GTGACACACGTGTTACAGAGT-----TCAACAACATCGTCACGGGGCAGTACCTGGAGGACTTGCTCTCCTATAGATCCATGGAAGGCAACTAGAGCAGCGCTGGGAAGACAACCAG---CAGGGCACAGAGGTGACTGCGAGGCTGGAATGAAGCAACCTGAATTACAGGCAAATCAATACTATTAATGATTATGTATGGTG-AAAGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30910280 201 + 172585720 GTGACACATGTGCTACAGAGT-----TCAACAACATCGTCACAGGGCAGTACCTGGAGGACTTGCTCTCCTATAGATCCATGGAAGGCAACTAGGGCAGTGCTGGGAAGACAACCAG---CAGGGCACAGAGGTGACTGCGAGGCTGGAATGAAGCAACCTGAATTACAGGCAAATCAATACTATTAATGATTATGTATGGTG-AAAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30199841 201 - 170955103 GTGACACATGTGCTACAGAGT-----TCAACAACATCGTTACAGGGCAGCACCTGGAGGACTTGCTCTCCTATAGATCCATGGAAGGCAACTAGGGCAGCGCTGGGAAGACAACCAG---CAGGGCACAGAGGTGACTGCGAGGCTGGAATGAAGCAACCTGAATTACGGGCAAATCAATACTATTAATGATTATGTATGGTG-AAAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     448753 201 +   1495729 GTGACACATGTGCTACAGAGT-----TCAACAACATCGTTACAGGGCAGCACCTGGAGGACTTGCTCTCCTATAGATCCATGGAAGGCAACTAGGGCAGCGCTGGGAAGACAACCAG---CAGGGCACAGAGGTGACTGCGAGGCTGGAATGAAGCAACCTGAATTACGGGCAAATCAATACTATTAATGATTATGTATGGTG-AAAGTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     552363 201 -    863181 GTGACACATGTGCTACAGAGT-----TCAACAACACCGTCACAGGGCAGCACCTGGAGGACTTGCTCTCCTATAGATCCATGGAAGGCAACTAGGGCAGCGCTGGGAAGACAACCAG---CAGGGCACAGAGGTGACTGCGAGGCTGGAATGAAGCAATCTGAATTACAGGCAAATCAATACTATTAATGATTATGTATGGTG-AAAGTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29699044 198 -  71996105 GTGACACATGTGCTACAGAGT-----TCAACAACATCGTCACAGGGCAGTACCTAGAGGACCTGCTCTCCTATAGATCCATGGAAGGCAACTAGGGCAGCGCTGG---GACAACCAG---CAGGGCACAGAGGTGACTGCGAGGCTGGAATGAAGCAACCCGAATTACAGGCAAATCAATACTATTAATGATTATGTATGGTG-AAAGTC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     341618 201 -   1829203 GTGACACATGTGCTACAGAGT-----TCAACAACATCGTCACAGGGCAGTACCTGGAGGACTTGCTCTCCTATAGATCCATGGAAGGCAACTAGGGCAGCGCTGGGAAGACAACCAG---CAGGGCACAGAGGTGACTGCGAGGCTGGAATGAAGCAACCTGAATTACGGGCAAATCAATACTATTAATGATTATGTATGATG-AAAGTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30530004 201 + 171630274 GTGACACACATGCTACAGAGT-----TAAAGAACATCGTCACGGGGCAGGACCTGGAGGACTTGCTCTCCCATAGATCCATGGAAGGCAACTAGAGCAGTGCTGGAAAGACAACCAG---CAGGGCACAGAGGTGACTGCGAGGCTGGAATGAAGCAACTTGAATTACAGGCAAATCAATACTAGTAATGATTATGTATGGTG-AAAGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           333436 201 +    515838 GTGACACGCATGCTACAGAGT-----TAAAGAACATCGTCACGGGGCAGTGCCTGGAGGACTTGCTCTCCCATAGATCCATGGAAGGCAACTAGAGTAGTGCTGGAAAGACAACCAG---CAGGGCACAGAGGTGACTGCGAGGCTGGAATGAAGCAACTTGAATTACAGGCAAATCAATACTAGCAATGATTATGTATGGTG-AAAGTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     963576 202 -   1771730 GTGACACACATGCTACAGAGT-----TAAAGAACATCGTCACGGGGCGGTGCCAGGAGGACCTGCTCTCCCATAGATCCATGGAAGGCAACTAGAGCAGCACTGGAAAGACAACCAG---CAGGGCACAGAGGTGACTGCGAGGCTGGAATGAAGCAACCTGAATTACAGGCAAATCAATACTAGTAATGATTATGTATGGTGAAAAGTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     148160 201 -    486031 GTGACACACATGCTACAGAGT-----TAAAGAACATCGTCACAGGGCAGTACCTGGAGGACTTGCTCTCCCATAGATCCATGGAAGGCAACTAGAGCAGCGCTGGAAAGACAACGAG---CAGGGCACAGAGGTGACTGCGAGGCTGGAATGAAGCAACTTGAATTATAGGCAAATCAATACTAGTAATGATTATGTATGGTG-AAAGTC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           391096 202 +  18854210 GTGACACCCATGCCACAGAGTTAAAGTAAAGAAGATCCTCACAGGGCAGAGCATGGGGGATTTGCTCTGCCATAGATCCATGGAAGGCA--CAGAACA-TACTGGGAAGACAGCCAG---CAGGGCACAGGGGCAACTGCCAGGCTGGAAGGAAGCAACTGGAACCGCAGGCAAATCAACACT-TTAATGATTACTTATGGTG-AAAGTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58137064 136 -  94987271 -TGCCCCACCTCCTA---AGG-----TACACAATGCCTACACTGGGCAG-----GGAGG--TGGCTGTGCTATGGG--CACGGA--------------------GGAAGGTAACC----------------------------------ATGCAGCATTTTGTAATGCTGGAACAGTAACACTATCACTGACAGT-TACCATG-GGAGTC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26396599 152 +  26524999 --------CATGCCTCGGGCT-----CCAGCAAAGCCCTTA--------------------------------------ATGGCTGGGTACTGGGTTGAC-CTGGGAGGGCAGCCCGTGACGGGGTGCATGGGCCAC-ATGCGGCTGGAATGCAGCCCCCAGAGCCACGG----CTCAGCTATACTCCTGACCATACACGGGG-TAAGCC
i canFam3.chr35            C 0 I 3175
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396167 504 -   1411461 I
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=13600.000000
s hg38.chr6_GL000254v2_alt  1545215 1 +   4827813 C
s panTro5.chr6             30415040 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30649267 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     357299 1 +   2037526 C
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75020326 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30910481 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30200042 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     448954 1 +   1495729 C
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     552564 1 -    863181 C
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29699242 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     341819 1 -   1829203 C
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30530205 1 + 171630274 C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           333637 1 +    515838 C
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     963778 1 -   1771730 C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     148361 1 -    486031 C
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           391298 1 +  18854210 C
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58137200 1 -  94987271 C
i mm10.chr17               C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396167 504 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=1266238.000000
s hg38.chr6_GL000254v2_alt  1545216 116 +   4827813 ATCACAACAGAGTTCAGTGGCCTCTGTCAGTAGTGACATTAATGGGACAGAAATAAAACCCCCAGTCTATAAGACCCAAGAGTAAAC-AAAACAGGGATATAACGTCCACTCATTGA-
s panTro5.chr6             30415041 116 + 175400573 ATCGCAACAGAGTTCAGTGGCCTCTGTCAGTAGTGACATTAATGGGACAGAAATAAAACCCCCAGTCTATAAGACCCAAGAGTAAAC-AAAACAGGGATATAACGTCCACTCATTGA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30649268 116 + 173848474 ATCGCAACAGAGTTCAGTGGCCTCTGTCAGTAGTGACATTAATGGGACAGAAATAAAACCCCCAGTCTATAAGACCCAAGAGTAAAC-AAAACAGGGATATAACGTCCACTCATTGA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     357300 116 +   2037526 ATCGCAACAGAGTTCAGTGGCCTCTGTCAGTAGTGACATTAATGGGACAGAAATAAAACCCCCAGTCTATAAGACCCAAGAGTAAAC-AAAACAGGGATATAACGTCCACTCATTGA-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75020327 116 + 122973662 ATTGCAACAGAGTTCAGTGGCCTCTGTCAGTAGTGACATTAATGGGACAGAAATAAAACCCCCGGTCTATAAGACCCAAGAGTAAAC-AAAACAGGGATATAACGTCCACTCATTGA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30910482 116 + 172585720 ATCGCAACAGAGTTCAGTGGCCTTGGTCAGTAGTGACATTAATGGGACAGAAATAAAACCCCCAGTCTATAAGACTCAAGAGTAAAC-AAAACAGGGATATAATGTTTACTCATTGA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30200043 116 - 170955103 ATCGCAACAGAGTTCAGTGGCCTTGGTCAGTAGTGACATTAATGAGACAGAAATAAAACCCCCAGTCTATAAGACCCAAAAGTAAAC-AAAACAGGGATATAATGTTTACTCATTGA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     448955 116 +   1495729 ATCGCAACAGAGTTCAGTGGCCTTGGTCAGTAGTGACATTAATGAGACAGAAATAAAACCCCCAGTCTATAAGACCCAAAAGTAAAC-AAAACAGGGATATAATGTTTACTCATTGA-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     552565 116 -    863181 ATTGCAATAGAGTTCAGTGGCCTTGGTCAGTAGTGACATTAATGGGACAGAAATAAAACCCCCACTCTATAAGACCCAAGAGTAAAC-AAAACAGGGATATAATGTTTACTCATTGA-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29699243 116 -  71996105 ATCGCAACAGAGTTCAGTGGCCTTGGTCAGTAGTGACATTAATGGGACAGAAATAAAACCCCCAGTCTATAAGACCCAAGAGTAAAC-AAAACAGCGATATAATGTTTACTCATtga-
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     341820 117 -   1829203 ATCGCAACAGAGTTCAGTGGCCTTGGTCAGTAGTGACATTAATGGGACAGAAATAAAGCCCCCAGTCTATAAGACCCAAGAGTAAACAAAAACAGGGATATAATGTTTACTCATTGA-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30530206 115 + 171630274 ATTGCAACAGAGTTCAGTGGCCTCTGTCAGTAGTGACATGAATGGGATAGAAATAAAACCCCCAGTCTATATGACCCAAGAGTAAAC-AAAACAGTAATATAATGT-GACTCATTGA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           333638 115 +    515838 ATTGCAACAGAGTTCAGTGGCCTCTGTCAGTAGTGACATGAATGGGATAGAGATAAAACCCCCAGTCTATACGACCCAAGAGTAAAC-AAAACAGTAATATAATGT-AACTCATTGA-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     963779 115 -   1771730 ATTGCAACAGAGTTCAGTGGCCTCTGTCAGTACTGACATGAATGGGACAGAAATAAAACCCCCAGTCTATATGACCCAAGAGAAAAC-AAAACAGAAATATAATGT-GACTCATTGA-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     148362 115 -    486031 ATTGCAACAGAGTTCAGTGGCCTCTGTCAGTAGTGACATGAATGGGATAGAAATAAAACCCCCAGTCTATATGACCCAAGAGTAAAC-AAAACAGTAATATAATGT-GACTCATTGA-
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     396671 113 -   1411461 ATCACAACAGGGCTCAGTGGCCTTTGTCAGTGGTGACATTAATGGGACAGAAATAA---CCCCAGTCTGTAAGACCCAAAAGAAAAC-AAAACAGGAATATAATGTCTACTCCTTGA-
i proCoq1.NW_012149775v1   I 504 I 1502
s otoGar3.GL873550           391299 111 +  18854210 ATTACAACAGAGTTCAGTGGCTTTTGTCATTAGTGATATTAACGAGGCAGAAATAAAACCTTCAGTCTATAACACCCAAGAGAAGAC-AAAACAGGAATGTAATGTCTACTC------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58137201 112 -  94987271 AT--CAGCGGAGCTTAGTGGACTCTGCTAATGGTGATAGGAAATACATAGACATAAAA-CTGCAGCCTATATA--TATATACCACAA-GGAAAAGACATACAATGCTGATTCCTTAAA
i mm10.chr17               C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e canFam3.chr35            26396751 3175 +  26524999 I
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=636772.000000
s hg38.chr6_GL000254v2_alt  1545332 80 +   4827813 GGGTCTAGTACAATAATACATAAAAAGTGTTTTATAACGTAAAAGGACTACATAAATATAAGAGATTCTTATAGTGCTGA
s panTro5.chr6             30415157 80 + 175400573 GGGTCTAGTACAATAATACATAAAAAGTGTTTTATAACATAAAAGGACTACATAAATATAAGAGACTCTTATAGTGCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30649384 80 + 173848474 GGGTCTAGTACAATAATACATAAAAAGTGTTTTATAACATAAAAGGACTACATAAATATAAGAGACTCTTATAGTGCTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     357416 79 +   2037526 GGGTCTAGTACAATAATACAT-AAAAGTGTTTTATAACGTAAAAGGACTACATAAATATAAGAGACTCTTATAGTGCTGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75020443 80 + 122973662 GGGTCTAGTACAATAATACATAAAAAGTGTTTTATAACTTAAAAGGACTACATAAATATAAGAGACTATTATAGTGCTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30910598 80 + 172585720 GGGTCTAGTACAATAACACATAAAAAGCGTTTTATAACTTAAAAGGACTACATAAACATAAGAAACTATTATAGTGCTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30200159 78 - 170955103 GGGTCTAGTACAATAATACATAAAAAGCATTTTATAACGTAAAAGGACTACATAAATAT--GAGACTATTATAGTGCTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     449071 78 +   1495729 GGGTCTAGTACAATAATACATAAAAAGCATTTTATAACGTAAAAGGACTACATAAATAT--GAGACTATTATAGTGCTGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     552681 80 -    863181 GGGTCTAGTACAATAATACATAAAAAGCATTTTATAACGTAAAAGGACTACATAAATATAAGAGACTATTATAGTGCTGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29699359 80 -  71996105 gggtctagtacaataacacataaaaagcgttttataacttaaaaggactacataaacataagaaactattatAGTGCTGA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     341937 78 -   1829203 GGGTTTAGTACAATAATACATAAAAAGCATTTTATAACGTAAAAGGACTACATAAATAT--GAGACTATTATAGTACTGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30530321 76 + 171630274 GGGCCTAGTTAAGTACTATATAAAAAGTGTTTTATGATGTAAAAGGACTACAT----ATAAGAGACTATTACAGTGCTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           333753 62 +    515838 GGGTCTAGTTAAGTACTATATAAAAAGTGTTTTACGATGTAAAAG------------------GACTGTTACAGTGCTGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     963894 76 -   1771730 GAGTCTAGTTAAGTACTATATAAAAAGTGTTTTATGATGTAAAAGGACTACAT----ATAAGAGACTATTACAGTGCTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     148477 76 -    486031 GGGTCTAGTTAAGTACTACATAAAAAGTGTTTTATGATGTAAAAGGACTACAT----ATAAGAGACTATTACAGTGCTGA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           391410 72 +  18854210 ----CTAATGTAATAATATATAAAAAGCACTTTATAAAGTGAAAGGACTATACAGATTTAAGG----ATTATAGTGCTAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58137313 56 -  94987271 AGATCTGATATGGAAATATAT-AAAAGTGCTCTGCAGGCGAGGAG-----------------------TTATACTGCTGA
i mm10.chr17               C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=37136.000000
s hg38.chr6_GL000254v2_alt  1545412 10 +   4827813 TAATAAATTC
s panTro5.chr6             30415237 10 + 175400573 TAATAAATTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30649464 10 + 173848474 TAATAAATTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     357495 10 +   2037526 TAATAAATTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75020523 10 + 122973662 TAATAAATTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30910678  9 + 172585720 TAATAATTG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30200237  9 - 170955103 TAATAATTC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     449149  9 +   1495729 TAATAATTC-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     552761  9 -    863181 TAATAATTC-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29699439  9 -  71996105 TAATAATTG-
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     342015  9 -   1829203 TAATAATCC-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30530397 10 + 171630274 TAATAAATTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           333815 10 +    515838 TAATAAATTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     963970 10 -   1771730 TAATAAATTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     148553 10 -    486031 TAATAAATTC
i aotNan1.NW_018496901v1   C 0 C 0
s mm10.chr17               58137369  7 -  94987271 GAATATG---
i mm10.chr17               C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           391482  0 +  18854210 C
e manLeu1.NW_012107142v1     433916 2210 -    735854 M

a score=1597332.000000
s hg38.chr6_GL000254v2_alt  1545422 151 +   4827813 CAACTGGAAGCACTAA-TGGATCTAGGTATGTGTGACTTT--AAGAGACATAATGAG-------GGGAAAATCAAGCACCTTCA--AAGCTCAAATGAAGGATTCAAGG-AATTTAACTGTCAAGTGAAAGTAATATCAAGTTCCTACATGTTAGTAATGCTGG
s panTro5.chr6             30415247 151 + 175400573 CAACTGGAAGCACTAA-TGGATCTAGGTATGTGTGACTTT--AAGAGACATAATGAG-------GGGAAAATCAAGCACCTTCA--AAGCTCAAATGAAGGAATCAAGG-AATTTAACTGTCAAGTGAAAGTAATATCAAGTTCCTACATGTTAGTAATGCTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30649474 151 + 173848474 CAACTGGAAGCACTAA-TGGATCTAGGTATGTGTGACTTT--AAGAGACATAATGAG-------GGGAAAATCAAGCACCTTCG--AAGCTCAAATGAAGGAATCAAGG-AATTTAACTGTCAAGTGAAAGTAATATCAAGTTCCTACATGTTAGTAATGCTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     357505 151 +   2037526 CAACTGGAAGCACTAA-TGGATCTAGGTATGTGTGACTTT--AAGAGACATAATGAG-------GGGAAAATCAAGCACCTTCA--AAGCTCAAATGAAGGAATCAAGG-AATTTAACTGTCAAGTGAAAGTAATATCAAGTTCCTACATGTTAGTAATGCTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75020533 151 + 122973662 CAACTGGAAGCACTAA-TGGATCTAGGTATGTGTGACTTT--AAGAGACATAATGAG-------GGGAAAATCAAGCACCTTCA--AAGCTCAAATGAAGGAATCAAGG-AATTTAACTGTCAAGTGAAAGTAATATCAAGTTCCTACATGTTAGTAATGCTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30910687 152 + 172585720 CAACTGGAAGCACTAA-TGGATCTAGGTATGTGTGATTTT--AAGAGACATAATGAG-------GGGAAAATCAAGCACCTTCA--AAGCTCAAATGAATGCATCAAGGAAATTTAACTGTCAAGTGAAAGTAATATCAAGTTCCTAGATGTTAGTAATGCTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30200246 151 - 170955103 CAACTGGAAGCACTAA-TGGATCTAGGTATGTGTGACTTT--AAGAGACATAATGAG-------GGGAAAATCAAGCACCTTCA--AAGCTCAAATGAAGGAATCAAGG-AATTTAACTGTCAAGTGAAAGTAATATCAAGTTCCTAGATGTTAGTAATGCTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     449158 151 +   1495729 CAACTGGAAGCACTAA-TGGATCTAGGTATGTGTGACTTT--AAGAGACATAATGAG-------GGGAAAATCAAGCACCTTCA--AAGCTCAAATGAAGGAATCAAGG-AATTTAACTGTCAAGTGAAAGTAATATCAAGTTCCTAGATGTTAGTAATGCTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     552770 151 -    863181 CAACTGGAAGCACTAA-CGGATCTAGGTATGTGTGACTTT--AAGAGACATAATGAG-------GGGAAAATCAAGCACCTTCA--AAGCTCAAATGAAGGAATCAAGG-AATTTAACTGTCAAGTGAAAGTAATATCAAGTTCCTAGATGTTAGTAATGCTGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29699448 152 -  71996105 CAACTGGAAGCACTAA-TGGATCTAGGTATGTGTGACTTT--AAGAGACATAATGAG-------GGGAAAATCAAGCACCTTCA--AAGCTCAAATGAATGCATCAAGGAAATTTAACTGTCAAGTGAAAGTAATATCAAGTTCCTAGATGTTAGTAATGCTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     436126 151 -    735854 CAACTGGAAGCACTAA-CGGATCTAGGTATGTGTGACTTT--AAGAGACATAATGAG-------GGGAAAATCAAGCACCTTCA--AAGCTCAAATGAAGGAATCAAGG-AATTTAACTGTCAAATGAAAGTAATATCAAGTTCCTAGATGTTAGTAATGCTGG
i manLeu1.NW_012107142v1   M 2210 C 0
s colAng1.NW_012115577v1     342024 151 -   1829203 CAACTGGAAGCACTAA-TGGATCTAGGTATGTGTGACTTT--AAGAGACATAATGAG-------GGGGAAATCAAGCACCTTCA--AAGTTCAAATGAAGGAATCAAGG-AATTTAACTGTCAAGTGAAAGTGATATCAAGTTCCTAGATGTTAGTAATGCTGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30530407 152 + 171630274 CAACTGGAAGCACTAATTGGATCTAGTTATGTGTGACTTT--AAGAGACAAAATGAG-------GGGAAAATCAAGCACTTTCA--AAGCACAAATGAAAGAATCAAGG-AATTTAACTGTCAAGTGAAAGTAATATCAAGTTCCTAGATGTGAGTCATGCTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           333825 152 +    515838 CAACTGGAAGCACTAATTGGATCTAGTTATGTGTGACTTT--AAGAGACAAAATGAG-------GGGAAAATCAAGCACTTTCG--AAGCACAAATGAAAGAATCAAGT-AATTTAACTGTCAAGTGAAAGTAATATCAAGTTCCTAGATGTTAGTCATgctgg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     963980 152 -   1771730 CAACCGGAGGCACTAATTGGATCTAGTTATGTGTGATTTT--AAGAGACAAAATGAG-------GGGAAAATCAAGCACTTTCA--AAGCACAAATGAAAGAATCAAGG-AATTTAACTGTCAAGTGAAAGTAATATTAAGCTCCTAGATGTTAGTAATgctgg
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496901v1     148563 152 -    486031 CAACTGGAAGCACTAATTGGATCTAGTTATGTGTGACTTT--AAGAGACAAAATGAG-------GGGAAAATCAAGCACTTTCA--AAGCACAAATGAAAGAATCAAGG-AATTTAACTGTCAAGTGAAAGTAATATCAAGTtcctagatgttagtaatgctgg
i aotNan1.NW_018496901v1   C 0 C 0
s mm10.chr17               58137376 140 -  94987271 -AACCAAAAACACCCT-TGG-TTTAGACATGTGTGACTTTTCAAAAGATGTAATGAACAATAATAATAATAAAAAGCACATATACCAACTTGGAATGA------------AATTGAACTGGCAAATG-AAGAAGTAACAAGTCCCCGGA--------ATGTCGG
i mm10.chr17               C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           391482   0 +  18854210 C

a score=9555.000000
s hg38.chr6_GL000254v2_alt  1545573 1 +   4827813 T
s panTro5.chr6             30415398 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30649625 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     357656 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75020684 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30910839 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30200397 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     449309 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     552921 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29699600 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     436277 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     342175 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30530559 1 + 171630274 T
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     964133 1 -   1771730 t
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496901v1     148715 1 -    486031 t
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58137516 0 -  94987271 C
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e saiBol1.JH378341           333977 0 +    515838 C
e otoGar3.GL873550           391482 0 +  18854210 C

a score=116151.000000
s hg38.chr6_GL000254v2_alt  1545574 17 +   4827813 AGAAATGCTAGGAATTg
s panTro5.chr6             30415399 17 + 175400573 AGAAATGCTAGGAATTg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30649626 17 + 173848474 AGAAATGCTAGGAATTg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     357657 17 +   2037526 AGAAATGCTAGGAATTg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75020685 17 + 122973662 AGAAATGCTAGGAATTg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30910840 17 + 172585720 AGAAATACTAGGAATTg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30200398 17 - 170955103 AGAAATACTAGGAATTg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     449310 17 +   1495729 AGAAATACTAGGAATTg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     552922 17 -    863181 AGAAATACTAGGAATTg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29699601 17 -  71996105 AGAAACACTAGGAATTg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     436278 17 -    735854 AGAAATACTAGGAATTg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     342176 17 -   1829203 AGAAATACTAGGAATTg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30530560 17 + 171630274 AGAAATGCTAGAAATTG
i calJac3.chr4             C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58137516  0 -  94987271 C
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e saiBol1.JH378341           333977  0 +    515838 C
e otoGar3.GL873550           391482  0 +  18854210 C
e aotNan1.NW_018496901v1     148716  0 -    486031 C
e cebCap1.NW_016107755v1     964134  0 -   1771730 C

a score=31111.000000
s hg38.chr6_GL000254v2_alt  1545591 5 +   4827813 gccgg
s panTro5.chr6             30415416 5 + 175400573 gccgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30649643 5 + 173848474 gccgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     357674 5 +   2037526 gccgg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75020702 5 + 122973662 gccgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30910857 5 + 172585720 gccag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30200415 5 - 170955103 gccag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     449327 5 +   1495729 gccag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     552939 5 -    863181 gccag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29699618 5 -  71996105 gccag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     436295 5 -    735854 gccag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     342193 5 -   1829203 gccag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30530577 5 + 171630274 CCTGG
i calJac3.chr4             C 0 I 8
s otoGar3.GL873550           391482 5 +  18854210 gctga
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58137516 0 -  94987271 C
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e saiBol1.JH378341           333977 0 +    515838 C
e aotNan1.NW_018496901v1     148716 0 -    486031 C
e cebCap1.NW_016107755v1     964134 0 -   1771730 C

a score=645829.000000
s hg38.chr6_GL000254v2_alt  1545596 120 +   4827813 gcacggtggctcacacctgtaatcccaacactttgggaggccgaggcaggtgaatcacaatgtcaggagattgagaccatcctggctaacacggtgaa-accccatctctactaaaaatac
s panTro5.chr6             30415421 120 + 175400573 gcgcggtggctcacgcctgtaatcccaacactttgggaggccgaggcaggtgaatcacaatgtcaggagattgagaccatcctggctaacacggtgaa-atcccatctctactaaaaatac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30649648 120 + 173848474 gcacggtggctcacgcctgtaatcccaacactttgggaggctgaggcaggtgaatcacaatgtcaggagattgagaccatcctggctaacacggtgaa-atcccatctctactaaaaatac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     357679 120 +   2037526 gcgtggtggctcacgcctgtaatcccaacactttgggaggccgaggcaggtgaatcacaatgtcaggagattgagaccatcctggctaacacggtgaa-accccatctctactaaaaatac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75020707 117 + 122973662 gcgcagtggctcacgcctgtaatcccaacactttgggaggccaaggcaggtgaatcac---gtcaggagatcgagaccatcctggctaacatggtgaa-accccatctctactaaaaatac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30910862 120 + 172585720 gcacggtggctcacgcctgtaatcccaacactttgggagggtgaggcggatgaattacaacatcaggagatcgagaccatcctagctaacatggtgga-atcccacctctactaaaaatac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30200420 117 - 170955103 gcatggtggctcacgcctgtaatcccaacactttgggagggcgaggcaggtgaatt---acgtcaggagatcgagaccatcctggctaacgtggtgga-accccacctctactaaaaagac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     449332 117 +   1495729 gcatggtggctcacgcctgtaatcccaacactttgggagggcgaggcaggtgaatt---acgtcaggagatcgagaccatcctggctaacatggtgga-accccacctctactaaaaagac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     552944 117 -    863181 gcacggtggctcacgcctgtaatcccaacactttgggagggcgaggcaggtgaatt---acgtcaggagatcgagaccatcctggctaacatggtgga-accccacctctactaaaaatac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29699623 112 -  71996105 gcacggtagctcacgcctgtaatcccaacacttt--------gaggcgggtgaattacaacatcaggagatcgagaccatcctagctaacatggtgga-accccacctctactaagaatac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     436300 117 -    735854 gcacggtggctcacgcctgtaatcccaacactttgggagggcgaggcaggtgaatt---acgtcaggagatcgagaccatcctggctaacatggtgga-accccacctctactaaaaatac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     342198 119 -   1829203 gcacggtggctcacgcctgtaatcccaacactttgggagggcgaggcgggtgaattacaacgtcaggagat-gagaccatcctggctaacatggtgga-accccatctctactaaaaatac
i colAng1.NW_012115577v1   C 0 I 306
s otoGar3.GL873550           391487  79 +  18854210 gtgcagtggtttacg---------ccagcactttggaaggctgagg----tgaac------------------aggtcgcccaagctcacaggttcaagaccCCATCTCT-----------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58137516   0 -  94987271 C
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e saiBol1.JH378341           333977   0 +    515838 C
e aotNan1.NW_018496901v1     148716   0 -    486031 C
e cebCap1.NW_016107755v1     964134   0 -   1771730 C
e calJac3.chr4             30530582   8 + 171630274 I

a score=747866.000000
s hg38.chr6_GL000254v2_alt  1545716 116 +   4827813 aaaaattatccaggtgtggtagcatgcacctgtagtcccagctactcaggaggctgaggcaggagaatcaatcacctcaacccgggaggcagaggttgcagtgagccgagatcgtg
s panTro5.chr6             30415541 116 + 175400573 aaaaattacccaggtgtggtagcatgcacctgtagtcccagctactcaggaggctgaggcaggagactcaatcacctcaacccgggaggcagaggttgcagtgagccgagatcgtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30649768 116 + 173848474 aaaaattacccaggtgtggtagcatgcacctgtagtcccagctactcaggaggctgaggcaggagactcaatcacctcaacccgggaggcagaggttgcagtgagccgagatcgtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     357799 116 +   2037526 aaaaattacccaggtgtggtggcatgcacctgtagtcccagctactcaggaggctgaggcaggagactcaatcacctcaaaccgggaggcagaggttgcagtgagctgagatcgtg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75020824 116 + 122973662 aaaaattacccaggtgtggtagcatgcacctgtagtcccagctactcaggaggctgactcaagagaatcaatcacctcaacccgggaggcagaggttgcagtgagccaagatcatg
i nomLeu3.chr1a            C 0 I 314
s rheMac8.chr4             30910982 116 + 172585720 aaaaattatccaggcgtagtagcatgcacctgtagtcccagctactcaggaggctgaggcaggagaatcaatcacctcaacccaggaggcagaggttgcagtgagcctagattgtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30200537 116 - 170955103 aaaaattacccaggcgtagtagcatgcacctgtagtcccagctactcaggaggctgaggcaggagaatcaatcacctcaacccaggaggcagaggttgtagtgagcctagattgtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     449449 116 +   1495729 aaaaattacccaggcgtagtagcatgcacctgtagtcccagctactcaggaggctgaggcaggagaatcaatcacctcaacccaggaggcagaggttgtagtgagcctagattgtg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     553061 116 -    863181 aaaaattacccaggcgtagtagcatgcacctgtagtcccagctactcaggaggctgaggcaggagaatcaaccacctcaacccaggaggcagaggttgcagtgagcctagattgtg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29699735 116 -  71996105 aaaaattatccaggcgtagtagcatgcacctgtagtcccagctactcaggaggctgaggcaggagaatcaatcacctcaacccaggaggcagaggttgcagtgagcctagattgtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     436417 116 -    735854 aaaaattacccaggcgtagtagcatgcacctgtagtcccagctactcaggaggctgaggcaggagaatcaaccacctcaacccaggaggcagaggttgcagtgagcctagattgtg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     342623 116 -   1829203 aaaaattacccaggtgtggtagcatgcacctgtagtcccagctactcaggaggctgaggcaggagaatcaatcacctcaacccaggaggcagaggttgcagtgagcctagattgtg
i colAng1.NW_012115577v1   I 306 C 0
s otoGar3.GL873550           391566 107 +  18854210 -aaaagtagccaggcattgtggcaggcaccagtagccccagctactcaggaggctgaggcaagagaat-----agttgagcccaagagttagagattgctgtgagct---attatg
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58137516   0 -  94987271 C
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e saiBol1.JH378341           333977   0 +    515838 C
e aotNan1.NW_018496901v1     148716   0 -    486031 C
e cebCap1.NW_016107755v1     964134   0 -   1771730 C
e calJac3.chr4             30530582   8 + 171630274 I

a score=284414.000000
s hg38.chr6_GL000254v2_alt  1545832 57 +   4827813 ccattgcactccagcctgggtgacagagtgagactccatctc---------aaaaaa--aaaaaaaga
s panTro5.chr6             30415657 58 + 175400573 ccattgcactccagcctgggtgacagactgagactccatctc--------aaaaaaa--aaaaaaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30649884 54 + 173848474 ccattgcactccagcctgggtgacagactgagactccatctc------------aaa--aaaaaagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     357915 59 +   2037526 ccattgcactccagcctgggtgacagagtgagactccatctc-------aaaaaaaa--aaaaaaaga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75021254 66 + 122973662 ccactgcactccagcctgggcgacaaggcaagactccgtctcaaaaaaaaaaaaaaa--aaagaaaga
i nomLeu3.chr1a            I 314 C 0
s rheMac8.chr4             30911098 59 + 172585720 ccactgcgctccagcctgggtgacagagtgagattccatctc--------aaaaaag-aaaaaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30200653 58 - 170955103 ccactgcactccagcctgggtgacagagtgagactccatctc--------aaaaaag--aaaaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     449565 60 +   1495729 ccactgcactccagcctgggtgacagagtgagactccatctc--------aaaaaagaaaaaaaaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     553177 54 -    863181 ccactgcactccagcctgggtgacagagtgagactccatctc--------aaaaaag------aaaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29699851 55 -  71996105 ccactgcactccagcctgggtgacagagtgagactccatctc--------aaaaaag-----aaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     436533 54 -    735854 ccactgcactccagcctgggtgacagagtgagactccatctc--------aaaaaat------aaaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     342739 57 -   1829203 ccactacactccagcctgggtgacagagtgagactccatctc--------aaaacat---taaaaaaa
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           391673 57 +  18854210 ccagggcactctgccgggggcgacaaagtaagactctgtctc--------aaacaaa--aaaaGGGA-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58137516  0 -  94987271 C
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e saiBol1.JH378341           333977  0 +    515838 C
e aotNan1.NW_018496901v1     148716  0 -    486031 C
e cebCap1.NW_016107755v1     964134  0 -   1771730 C
e calJac3.chr4             30530582  8 + 171630274 I

a score=6392.000000
s hg38.chr6_GL000254v2_alt  1545889 1 +   4827813 a
s panTro5.chr6             30415715 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30649938 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     357974 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75021320 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30911157 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30200711 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     449625 1 +   1495729 a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     553231 1 -    863181 a
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29699906 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     436587 1 -    735854 a
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     342796 1 -   1829203 a
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           333977 1 +    515838 g
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           391730 1 +  18854210 G
i otoGar3.GL873550         C 0 I 532
s mm10.chr17               58137516 1 -  94987271 A
i mm10.chr17               C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e aotNan1.NW_018496901v1     148716 0 -    486031 C
e cebCap1.NW_016107755v1     964134 0 -   1771730 C
e calJac3.chr4             30530582 8 + 171630274 I

a score=10920.000000
s hg38.chr6_GL000254v2_alt  1545890 1 +   4827813 a
s panTro5.chr6             30415716 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30649939 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     357975 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75021321 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30911158 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30200712 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     449626 1 +   1495729 a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     553232 1 -    863181 a
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29699907 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     436588 1 -    735854 a
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     342797 1 -   1829203 a
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           333978 1 +    515838 a
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496901v1     148716 1 -    486031 a
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           392263 1 +  18854210 A
i otoGar3.GL873550         I 532 C 0
s mm10.chr17               58137517 1 -  94987271 A
i mm10.chr17               C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e cebCap1.NW_016107755v1     964134 0 -   1771730 C
e calJac3.chr4             30530582 8 + 171630274 I

a score=1148681.000000
s hg38.chr6_GL000254v2_alt  1545891 121 +   4827813 gaaaTGCt----aggaattgcctggtccaactccttggctttactgtt-------gaggaaataagcctggCTCAGCAGTTTTTCAGTTGTAACATACTGCAAGTGTTTGGAAAGAGGAAAAAGGAGTGGTA
s panTro5.chr6             30415717 121 + 175400573 gaaaTGCt----agaaattgcctggtccaactccttggctttactgtt-------gaggaaataagcctggCTCAGCACTTTTTCAGTTGTAACATACTGCAAGTGTTTGGAAAGAGGAAAAAGGAGTGGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30649940 121 + 173848474 gaaaTGCt----agaaattgcctggtccaactccttggctttactgtt-------gaggaaataagcctggCTCAGCACTTTTTCAGTTGTAACATACTGCAAGTGTTTGGAAAGAGGAAAAAGGAGTGGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     357976 121 +   2037526 gaaaTGCt----aggaattgcctggtccaactccttggctttactgtt-------gaggaaataagcctggCTCAGCACTTTTTCAGTTGTAACATACTGCAAGTGTTTGGAAAGAGGAAAAAGGAGTGGTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75021322 128 + 122973662 gaaaTGCt----aggaattgcctggtccaactccttggctttactgttgaggaaagaggAAATAAGCCTGGCTCAGCACTTTTTCAGTTGTAACATACTTCAAGTGTTTGGAAAGAGGAAAAAGGAATGGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30911159 121 + 172585720 aaaaTGCT----AGGAATTGCCTGGTCCAAATCCTTGGCTTTACTGTT-------GAGGAAATCAGCCTAGGTCAGCACTTTTTCAGTTGTAACATACTGCAAGTGTTTGGAAAGAGGAAAAAGGAATGGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30200713 121 - 170955103 aaaaTGCT----AGGAATTGCCTGGTCCAAATCCTTGGCTTTACTGTT-------GAGAAAATAAGCCTGGGTCAGCACTTTTTCAGTTGTAACATACTGCAAGTGTTTGGAAAGAGGAAAAAGGAATGGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     449627 121 +   1495729 aaaaTGCT----AGGAATTGCCTGGTCCAAATCCTTGGCTTTACTGTT-------GAGAAAATAAGCCTGGGTCAGCACTTTTTCAGTTGTAACATACTGCAAGTGTTTGGAAAGAGGAAAAAGGAATGGTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     553233 121 -    863181 aaaaTGCT----AGGAATTGCCTGGTCCAAATCCTTGGCTTTACTGTT-------GAGAAAATAAGCCTGGGTCAGCACTTTTTCAGTTGTAACATACTGCAAGTGTTTGGAAAGAGGAAAAAGGAATGGTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29699908 121 -  71996105 aaaaTGCT----AGGAATTGCCTGGTCCAAATCCTTGGCTTTACTGTT-------GAGGAAATCAGCCTAGGTCAGCATTTTTTCAGTTGTAACATACTGCAAGTGTTTGGAAAGAGGAAAAAGGAATGGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     436589 121 -    735854 aaaaTGCT----AGGAATTGCCTGGTCCAAATCCTTGGCTTTACTGTT-------GAGAAAATAAGCCTGGGTCAGCACTTTTTCAGTTGTAACATACTGCAAGTGTTTGGAAAGAGGAAAAAGGAATGGTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     342798 121 -   1829203 aaaaTGCT----AGGAATTGCCTGGTCCAAATCCTTGGCTTTACTGTT-------GAGGAAATAAGCCTGGGTCAGTACTTTTTCAGTTGTAACATACTGTAAGTGCTTGGAAAGAGGAAAAAGGAATGGTA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           333979 121 +    515838 gaaatgct----agaaattgcctggtccaactccttggctttactgtt-------gaggaaataagcctggcccagCACTTTTTCAGTTGTAACATACTGCCAGTGTTTGGAAATAGGAAAAGGAAATGGTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     964134 121 -   1771730 gaaatgct----agaaattgtctggtccaactccttgtctttactgtt-------gaggaaataagcctggcccagCACTTTTTCAGTTGTAACATACTGCAAGTGTTTAGAAATAGGAAAAAGAAATGGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     148717 121 -    486031 gaaatgct----agaaattgcctggtccaacttcttggctttactgtt-------gaggaaataagcctggcccagCACTTTTTCAGTTGTAACATACTGCAAGTGTTTGGAAATTGGAAAAAGAAATGGTA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           392264  71 +  18854210 GAAATGCTACAAATGAATTGCTCGGCTCAACTCTCTGGTTTTGCTGTT-------GAGGAGGTAAGGCTGGCCCAGCA------------------------------------------------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58137518 107 -  94987271 GAAGTGTT----GAAGGGTGTCTGATCTAACCTCTTGG-TTTGCTCTT-------AAGGAAA--------ACCCAGTG--TTCTCAATT-TAACACATTGCT-GAGTTTGAAAATAGG-AAAGGAAATGAAA
i mm10.chr17               C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e calJac3.chr4             30530582   8 + 171630274 I

a score=879309.000000
s hg38.chr6_GL000254v2_alt  1546012 92 +   4827813 CTG-GGCGTGTCTGTGGGCTTTCAAGCCCTTTATCAT----GCCTCTTTGCCAAATGGCCTAGAAGTTTAAAAGCTGAGG-------------TT--TTTCTTTGTTGAAGG
s panTro5.chr6             30415838 92 + 175400573 CTG-GGCGTGTCTGTGGGCTTTCAAGCCCTTTATCAT----GTCTCTTTGCCAAATGGCCTAGAAGTTTAAAAGCTGAGG-------------TT--TTTCTTTGTTGAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30650061 92 + 173848474 CTG-GGCGTGTCTGTGGGCTTTCAAGCCCTTTATCAT----GTCTCTTTGCCAAATGGCCTAGAAGTTTAAAAGCTGAGG-------------TT--TTTCTTTGTTGAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     358097 92 +   2037526 CTG-GGCGTGTCTGTGGGCTTTCAAGCCCTTTATCAT----GCCGCTTTGCCAAATGGCCTAGAAGTTTAAAAGCTGAGG-------------TT--TTTCTTTGTTGAAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75021450 94 + 122973662 CTG-GGCTTATCTGTGGGATTTCAAGCCCTTTATCAT----GCCTCTTTGCCAAATGGCCTAGAAGTTTAAAAGCTGAGG-----------GTTT--TTTTTTTGTTGAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30911280 97 + 172585720 CTG-GATGTGTCTGTGGGCTTTCAAGCCCTTTATCATGCATGCCTCTTTGCCGAATGGCCTAGAAGTTTAAAAGCTGAGG-------------TG-GTTTTTTTGTCGAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30200834 97 - 170955103 CTG-GGTGTGTCTGTGGGCTTTCAAGCCCTTTATCATGCATGCCTCTTTGCCGAATGGCCTAGAAGTTTAAAAGCTGAGG-------------TG-GTTTTTTTGTCGAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     449748 97 +   1495729 CTG-GGTGTGTCTGTGGGCTTTCAAGCCCTTTATCATGCATGCCTCTTTGCCGAATGGCCTAGAAGTTTAAAAGCTGAGG-------------TT-GTTTTTTTGTCGAAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     553354 96 -    863181 CTG-GGTGTGTCTGTGGGCTTTCAAGCCCTTTATCATGCATGCCTCTTTGCTGAATGGCCTAGAAGTTTAAAAGCTGAGG-------------TT-G-TTTTTTGTCGAAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29700029 97 -  71996105 CTG-GGTGTGTCTGTGGGCTTGCAAGCCCTTTATCATGCACGCCTCTTTGCCGAATGGCCTAGAAGTTTAAAAGCTGAGG-------------TG-GTTTTTTTGTCGAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     436710 97 -    735854 CTG-GGTGTGTCTGTGGGCTTTCAAGCCCTTTATCATGCATGCCTCTTTGCTGAATGGCCTAGAAGTTTAAAAGCTGAGG-------------TT-GTTTTTTTGTCGAAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     342919 97 -   1829203 CTG-GGTGTGTCTGTGGGCTTTCAAGCCCTTTATCATGCATGCCTCTTTGCCCAGTGGCCTAGAAGTTTAAAAGCTGAGG-------------TT-GTTTTTTCGTTGAAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30530590 93 + 171630274 CTG-GGCGTGTCTGTGGGCTGTGAAGCCGTTCATCAT----GCCTCTTTGCCCAATGGCCTGGAAGTTTAAAAACTGAGG-------------TT-GTTTTCTTGCTCAAGG
i calJac3.chr4             I 8 C 0
s saiBol1.JH378341           334100 93 +    515838 CTG-GGTGTGGCTGTGGGCTGTGAAGCCGTTCATCAT----GCCTCTTTGCCAAATGGCCTGGAAGTTTAAAAGCTGAGG-------------TT-GTTTTCTTGCTCAAGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     964255 90 -   1771730 CTG-GGAGTGTCTGTGGGCTGTGAAGCTGT---TCAT----GCCTCTTTGCCGAATGGCCTGGAAGTTTAAAAGCTGAGG-------------TT-GTTTTCTTGCTCAAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     148838 93 -    486031 CTG-GGCATGTCTGTGGGCTGTGAAGCCGTTCATCAC----ACCTCTTTGCCGAATGGCCTGGAAGTTTAAAAGCTGAGG-------------TT-GTTTTCTTGCTCAAGG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           392335 67 +  18854210 ----------------------------CACTATCAT----GCCACTTTGTTGAATGGGCTGGAAGTTTAAAAGCTGAGT-------------TTTGTTTTGTTGTTGTTTG
i otoGar3.GL873550         C 0 I 288
s mm10.chr17               58137625 92 -  94987271 CTGTGGGGTGCCTGTGGGCCA-GAAGCTCT-----------G-------GCAGAATAGCCTGGAAGTTTAAAAGCCAGGACAGCTTCTTGTTTTT-GTTTTCGTGCTGGAGA
i mm10.chr17               C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I

a score=2384187.000000
s hg38.chr6_GL000254v2_alt  1546104 229 +   4827813 ATAGCCTGTGTTATCTTTGG-GTTGGGAACTTATTTTGCAATTTACTTGCAAAATAAGAACAATAAAAGGACTATGAAGAGCTCAGCTACAGCTCTTCTTCCATGCAAAACAGGACACC-T------------------------CATCac-----------------ccaggctccatgctggggtttgatggtctctaaacctcctgaaactgtctaaaaattat--tgcatatgtacTAGATACCTAA---AATTGTCT-GGGGATTACAGAAGA
s panTro5.chr6             30415930 229 + 175400573 ATAGCCTGTGTTATCTTTGG-GTTGGGAACTTATTTTGCAATTTACTTGCAAAATAAGAagaataaaaggactatgaagagctcagctacagctcTTCTTCCATGCAAAACAGGACACC-T------------------------CATCac-----------------cgaggctccatgctggggtttgatggtctctaaacctcctgaaactgtctaaaaattat--tgcatatgtacTAGATACCTAA---AATTGTCT-GGGGATTACAGAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30650153 229 + 173848474 ATAGCCTGTGTTATCTTTGG-GTTGGGAACTTATTTTGCAATTTACTTGCAAAATAAGAagaataaaaggactatgaagagctcagctacagctcTTCTTCCATGCAAAACAGGACACC-T------------------------CATCac-----------------ccaggctccatgctggggtttgatggtctctaaacctcctgaaactgtctaaaaattat--tgcatatgtacTAGATACCTAA---AATTGTCT-GGGGATTACAGAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     358189 229 +   2037526 ATAGCCTGTGTTATCTTTGG-GTTGGGAACTTATTTTGCAATTTACTTGCAAAATAAGAagaataaaaggactatgaagagctcagctacagctcTTCTTCCATGCAAAACAGGACACC-T------------------------CATCac-----------------ccaggctccatgctggggtttgatggtctctaaacctcctgaaactgtctaaaaattat--tgcatatgtacTAGATACCTAA---AATTGTCT-GGGGATTACAGAAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75021544 229 + 122973662 ATAGCCTGTGTTATCTTTGG-GTTGGGAACTTATTTTGCAATTTACTTGCAAAATAAGAAGAATAAAAGGACTATGAAGAGCTCAGCTACAGCTCTTCTTCCATGCAAAATAGGACACC-T------------------------CATCac-----------------ccaggctccacgctggggttcgatggtctctaaacctcctgaaactgtctaaaaattat--tgcatatgtacTAGATACCTAA---AATTGTCT-GGGGATTACAGAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30911377 225 + 172585720 ATAGCCTGTGTTATCTTTGG-GTTGGGAACTTATTTTGCAATTTACTTGCAAAACAAGAAGAATCAAAGGACTATCAAGAGCTCAGCTACAGCTCTTCTTCCGTGCAAAATAAGACACC-T------------------------CATCAC-----------------CCAGGCTCCATGCTGGGCTTCGATGGTCTCTAAA----CTGAAACTGTCTAAAAATTAT--TGTACATGTACTAGATACTTAA---AATTGTCT-GGGAATTACAGAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30200931 225 - 170955103 ATAGCCTGTGTTATCTTTGG-GTTGGGAACTTATTTTGCAATTTACTTGCAAAACAAGAAGAATCAAAGGACTATCAAGAGCTCAGCTACAGCTCTTCTTCCGTGCAAAATAAGACACC-T------------------------CATCAC-----------------CCAGGCTCCATGCTGGGCTTCGATGGTCTCTAAA----CTGAAACTGTCTAAAAATTAT--TGTACATGTACTAGATACTTAA---AATTGTCT-GGGAATTACAGAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     449845 225 +   1495729 ATAGCCTGTGTTATCTTTGG-GTTGGGAACTTATTTTGCAATTTACTTGCAAAACAAGAAGAATCAAAGGACTATCAAGAGCTCAGCTACAGCTCTTCTTCCGTGCAAAATAAGACACC-T------------------------CATCAC-----------------CCAGGCTCCATGCTGGGCTTCGATGGTCTCTAAA----CTGAAACTGTCTAAAAATTAT--TGTACATGTACTAGATACTTAA---AATTGTCT-GGGAATTACAGAAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     553450 225 -    863181 ATAGCCTGTGTTATCTTTGG-GTTGGGAACTTATTTTGCAATTTACTTGCAAAACAAGAAGAATCAAAGGACTATCAAGAGCTCAGCTACAGCTCTCCTTCCGTGCAAAATAAGACACC-T------------------------CATCAC-----------------CCAGGCTCCATGCTGGGCTTCGATGGTCTCTAAA----CTGAAACTGTCTAAAAATTAT--TGTACATGTACTAGATACTTAA---AATTGTCT-GGGAAGTACAGAAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29700126 225 -  71996105 ATAGCCTGTGTTATCTTTGG-GTTGGGAACTTATTTTGCAGTTTACTTGCAAAATAAGAAGAATCAAAGGACTATCAAGAGCTCAGCTACAGCTCTTCTTCCATGCAAAATAAGACACC-T------------------------CATCAC-----------------CCAGGCTCCCTGCTGGGCTTCGATGGTCTCTAAA----CTGAAACTGTCTAAAAATTAT--TGTACATGTACTAGATACTTAA---AATTGTCT-GGGAATTACAGAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     436807 225 -    735854 ATAGCCTGTGTTATCTTTGG-GTTGGGAACTTATTTTGCAATTTACTTGCAAAACAAGAagaatcaaaggactatcaagagcttagctacagttcTTCTTCCGTGCAAAATAAGACACC-T------------------------CATCAC-----------------CCAGGCTCCATGCTGGGCTTCGATGGTCTCTAAA----CTGAAACTGTCTAAAAATTAT--TGTACATGTACTAGATACTTAA---AATTGTCT-GGGAATTACAGAAGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     343016 225 -   1829203 ATAGCCTGTGTTATCTTTGG-GTTGGGAACTTACTTTGCAATTTACTTGCAAAACAAGAAGAATCAAAGGACTACCAAGAGCTCAGCTACAGCTCCTCTTCCATGCAAAATAAGACACC-T------------------------CATCAC-----------------CCAGGCTCCATGCTGGGCTTTGATGATCTCTAAA----CTGAAACTGTCTAAAAATTAT--TGTACCTGTACTAGATACCTAA---AATTGTCT-GGGAATTACAGAAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30530683 229 + 171630274 ATAGCCTGTGTTATCTTTGGGGTTGGGAACTTATTTTGCAATTTACTTGCAAAATAAAAAGAATAAAAGGACTGTGAAGAGCTCAGCTACAGCTCTTCTTCCATGCAAAATAGGATACC-T------------------------CATCAC-----------------CCAGGCTCCATGCTGGGATTCGATAGTCTTTAAACCTCCTGAAACTGTC-AAAAATTAT--TGTATATGTATTAGATACATAA---AACTGTCC-AGAGAttgcagcaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           334193 227 +    515838 ATGGCCCGTGTTATCTTTGGAGTTGGGAACTTATTTTGCAATTTACTTGCAAAATAAAAAGAATAAAAGGACTACGAAATGCTTAGCTACAGCTCTTCTTCCATGCCAAATAGGATACC-T------------------------CATCAC-----------------CCAGCCTCCATGCTGGGATTCGATAGTCTTTAAACCTCCTGAAACTGTC-AAAAATTAT--TGTATC--TACTAGATACATAA---AACTGTCT-AGAGATTACAGCAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     964345 229 -   1771730 ATAGCCCGTGTTATCTTTGGAGTTGGGAACTTATTTTGCAACTTACTTGCAAAATAAAAagaataaaaggactatgaagagctcagctacagctcTTCTTCCATGCAAAATAGGATACC-T------------------------CATCAT-----------------CCAGCCTCCATGCTGGGATTCGACAGTCTTTAAACCTCCTGAAACTGTC-AAAAATTAT--TGTATATGTACTAGATACATAA---AACTGTCT-AGAGAttacagcaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     148931 229 -    486031 ATAGCCTGTGTTATCTTTGGGGTTGGGAACTTATTTTGCAATTTACTTGCAAAATGAAAagaataaaaggactatgaagagctcagctacagctcTTCTTCCATGCAAAATAGGATACC-T------------------------CATCAC-----------------CCAGGCTCCATGCTGGGATTCGATAGTCTTTAAACCTCCTGAAACTGTC-AAAAATTAT--TGTATATGTACTAGATACATAA---AACTGTCT-AGAGATAACAGCAAA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           392690 240 +  18854210 ACAGCATATATTATCTGTGGGGTGAGGAAAGAATTTTGCAATTTCCT---------AGAAGAATAAAAGAACTATGAAGAGCTCGCCCACAGGTCCCCTTCCACACAAAATAAGACACCAT------------------------CATGACTTGGAGCTGACATTAGTCTGGGCTCAATGCTGAGCTTCAGTGGTCTTTAAACCTGCTAAAACTATATTAAAAATGT--GATGTATatactagatgaagaa---aattgtctaggagatcacagaaga
i otoGar3.GL873550         I 288 C 0
s mm10.chr17               58137717 219 -  94987271 GAAGCAAGTAGT-TCTAAGG-GC--AGAACTTAT-----AATTTCTT--------------------AGGAT-----AGAGCTCAGCTACTATTCCCCTCTCTCATAAAGTACGACGCC-TTCACCACAACCCCCCCCCCCCCTGCATTAA-----------------ACAAGCTC-ACGCTGGGTCCGGTGGGTCTTTAGA----TTTAAGTTGAATAAAAGCTCCTATGTACATGTAC-ATATATCAGAGCTAACATTTC-AGGGCTTACAGAAGA
i mm10.chr17               C 0 I 98
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I

a score=214798.000000
s hg38.chr6_GL000254v2_alt  1546333 38 +   4827813 ATAACcttctgtaagattaatcagcaaataagtagaag
s panTro5.chr6             30416159 38 + 175400573 ATAACcttctgtaagattaatcagcaaataagtagaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30650382 38 + 173848474 ATAACcttctgtaagattaatcagcaaataagtagaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     358418 35 +   2037526 ATAAC---CTGTAAGATTAATcagcaaataagtagaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75021773 38 + 122973662 ATAACcttctgtaagattaatcagcgaataagtagaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30911602 38 + 172585720 ATAAtcttctgtaagactaatcagcgaataagtagaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30201156 38 - 170955103 ATAAtcttctgtaagactaatcagcgaataagtagaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     450070 38 +   1495729 ATAAtcttctgtaagactaatcagcgaataagtagaag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     553675 38 -    863181 ATAAtcttctgtaagactaatcagcgaataagtagaag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29700351 38 -  71996105 ATAAtcttctgtaagattaatcagcgaataagtagaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     437032 38 -    735854 ATAAtcttctgtaagactaatcagcgaataagtagaag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     343241 38 -   1829203 ATAAtcttctgtaagattaatcagcgaataagtagaag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30530912 19 + 171630274 ------------------catcagtaaataagtac-ag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           334420 11 +    515838 ------------------CATCAGCAAAT---------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     964574 19 -   1771730 ------------------catcagtaaataagtag-ag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     149160 19 -    486031 ------------------CATCAGTAAGTAAgtag-ag
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           392930 21 +  18854210 a-----------------cactagctaataaggacaag
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58137936 98 -  94987271 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I

a score=1769845.000000
s hg38.chr6_GL000254v2_alt  1546371 156 +   4827813 agggataacagaatt----agaaaat-----cattttgcgactgccattataatagcacaaggatcatcaatagatgctaaaactattaggtgaaaagttttgggggatgagatagtacccatggtgccaaagcaccaatgaatggattacttcctgacatacct
s panTro5.chr6             30416197 156 + 175400573 agcgataacagaatt----agaaaat-----cattttgcgactgccattataatagcacaaggatcatcaatagatgctaaaactattaggtgaaaggttttgggggatgagatagtacccatggtgccaaagcaccaacgaatggattacttcctgacatacct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30650420 156 + 173848474 agggataacagaatt----agaaaat-----cattttgcgactgccattataatagcacaaggatcatcaatagatgctaaaactattaggtgaaaggttttgggggatgagatagtacccatggtgccaaagcaccaacgaatggattacttcctgacatacct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     358453 155 +   2037526 agggataacagaatt----agaaaat-----cattttgcgactgccattataatagcacaaggatcatcaacagatgctaaaactattaggtgaaaggtttt-ggggatgagatagtacccatggtgccaaagcaccaacgaatggattacttcctgacatacct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75021811 156 + 122973662 agggataatagaatt----agaaaat-----cattttgcgactgccattataatagcacaaggatcatcaatagatgctaaaactattaggtgaaaggttttgggggacgagatagcacccatggtgccaaagcaccaacgaatggattacttcctgacatacct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30911640 156 + 172585720 agggataacagaatt----agaaaat-----cattttgcgactgccattataatagcacaaggatcatcaatagatgctaaaactattaggtgaaaggttctgggggatgagatagtccccatagtgccaaagcaccaacgaatggattactttctgacatacct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30201194 156 - 170955103 agggataacagaatt----agaaaat-----cattttgcgactgccattataatagcacaaggatcatcaatagatgctaaaactattaggtgaaaggttctgggggatgagatagtccccatagtgccaaagcaccaacgaatggattacttcctgacatacct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     450108 156 +   1495729 agggataacagaatt----agaaaat-----cattttgcgactgccattataatagcacaaggatcatcaatagatgctaaaactattaggtgaaaggttctgggggatgagatagtccccatagtgccaaagcaccaacgaatggattacttcctgacatacct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     553713 156 -    863181 agggataacagaatt----agaaaat-----cattttgcgactgccattataatagcacaaggatcatcaatagatgctaaaactattaggtgaaaggttctgggggatgagatagtccccatagtgccaaagcaccaacgaatggattacttcctgacatacct
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29700389 156 -  71996105 agggataacagaatt----agaaaat-----cattttgtgactgccattataatagcacaaggatcatcaatagatgctaaaactattaggtgaaaggttctgggggatgagatagtccccatagtgccaaagcaccaacgaatggattacttcctgacatacct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     437070 156 -    735854 agggataacagaatt----agaaaat-----cattttgcgactgccattataatagcacaaggatcatcaatagatgctaaaactattaggtgaaaggttctgggggatgagatagtccccatagtgccaaagcaccaacgaatggattacttcctgacatacct
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     343279 155 -   1829203 agggataacagaatt----agaaaat-----cattttgtgactgccattataatagcacaaggatcatcaatagatgctaaaactattaggtgaaaggttctaggggatgagatagcctccacagtgccaaagcaccaa-gaacggattacttcctgacatacct
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30530931 155 + 171630274 aggggcagcaaaact----agaaaat-----cattttgcaactgccattataatagcacaaggatcatcaatagatgctaaaactattgggtgaaaggtttcggggg-caagacagtccccatggtgccaaagtaccaatgaatggattacttcctgacataact
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           334431 144 +    515838 -----------aact----agaaaat-----cattttgcgactgccatcataatagcacaaggatcatcaatagatgctaaaactattgggtgaaaggttttggggg-caagatagtccccatggtgccaaagtaccGACGAATGGATTACTTCCTGGCATAACT
i saiBol1.JH378341         C 0 I 1802
s cebCap1.NW_016107755v1     964593 151 -   1771730 agggacagcaaaact----ag-aaat-----cattttgcaactgcc---ataatagcacaaggatcatcaatagatgctaaaactattgcgtgaaaggttttggggg-caagatagtccccatggtgccaaagtaccaaccaatggattacttcctgacataact
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     149179 155 -    486031 agggacagcaaaact----agaaaat-----cattttgcaactgccactataatagcacaaggatcatcaatagatgctaaaactattgggtaaaaggttttggggg-caagatagtccccatggtgccaaagtaccaacgaatggattacttcctgacataact
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           392951 153 +  18854210 aacgataacagaatt----agaaaat-----attttttcaactgccattataatagcacaaggatcaacaa---atgctaaaaccattaggtaaaaggtttggggGGCCAGGATAGTCCCTGTGGCGCTGAAGTACCACCTAATGGATTATTTCCTAATGCACCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58138034 147 -  94987271 AGGGATCAAGGCAGTGGGGAGAAAATATAAGCCTTCTGCAACTGCCAACGTAACAATAAAATTGTCATCAACAGACATCAGAGCCATTAGGTGAAAGGTT--------TGGAGTAGACCCTATAATGCCACAG----------TGGATTATTTCCTAATGTGCCT
i mm10.chr17               I 98 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I

a score=1130613.000000
s hg38.chr6_GL000254v2_alt  1546527 119 +   4827813 tcataaggaagagatccagtggttatcttaactaagtgaccaaatccagcgtc-atcagcagacg---------------------gggcaaagtggcatgtgctttctggcatggcactatatgaatcacacaacattac
s panTro5.chr6             30416353 119 + 175400573 tcgtaaggaagagatccagtggttatcttaactaagtgaccaaatccagcgtc-atcagcagacg---------------------gggcaaagtggcatgtgctttctggcatggcactatatgaatcacacaacattac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30650576 119 + 173848474 tcgtaaggaagagatccagtggttatcttaactaagtgaccaaatccagcgtc-atcagcagacg---------------------gggcaaagtggcatgtgctttctggcatggcactatatgaatcacacaacattac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     358608 119 +   2037526 tcgtaaggaagagatccagtggttatcttaactaagtgaccaaatccagcatc-atcagcagacg---------------------gggcaaagtggcatgtgctttctggcatggcactatatgaatcacacaacattac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75021967 119 + 122973662 tcataaggaagagatccagtggttaccttaactaagtgaccaaatccagcgtc-atcagcagaca---------------------gggcaaagtggcatgtgctttctggcatggcactatatgaatcacacaacattac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30911796 119 + 172585720 tcataaggaagagatccagtggttaccttaactaagtgaccaaatccagcgtc-atcagcagatg---------------------gggcaaagtggcatgtgcttcccggcatggcactatatgaatcacacaacattac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30201350 119 - 170955103 tcataaggaagagatccagtggttaccttaactaagtgaccaaatccagcgtc-atcagcagacg---------------------gggcaaagtggcatgtgcttcccagcatggcactatatgaatcacacaacattac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     450264 119 +   1495729 tcataaggaagagatccagtggttaccttaactaagtgaccaaatccagcgtc-atcagcagacg---------------------gggcaaagtggcatgtgcttcccagcatggcactatatgaatcacacaacattac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     553869 117 -    863181 tcataaggaagagatccagtggttaccttaactaagtgaccaaatccagcgtc-atcagcagatg---------------------gggcaaagtggcatgtgctttccggcatggcactatatgaat--cacaacattac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29700545 119 -  71996105 tcataaggaagagatccagtggttaccttaactaagtgaccaaatccagcgtc-atcagcagacg---------------------gggcaaagtggcatgtgcttcccggcatggcactatatgaatcacacaacattac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     437226 119 -    735854 tcataaggaagagatccagtggttaccttaactaagtgaccaaatccagcgtc-atcagcagatg---------------------gggcaaagtggcatgtgcttcccggcatggcactatatgaatcacacaacattac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     343434 119 -   1829203 tcataaggaagagatccagtggttaccttaactaagtgaccaaatccagcatc-atcagcagacg---------------------gggcaaagtggaatgtgcttcccggcatggcactgtatgaatcacacaacattac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30531086 141 + 171630274 tgattaggaagagatcctgtgatcaccttaactaagtgatcaaatccaatgttaatcaacaggtgattaattaacattatagtgccatgccaggtggcatgtgcttcctggcatggcactatatgaatcacacaacattac
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     964744 120 -   1771730 tggtaaggaagagatcctgtgatcaccttaactaagtgatcaaatccagtgttaatcaacagagg---------------------gggcgaggtggcatgtgcttcctggcatggcactacatgaatcacacaacattac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     149334 120 -    486031 tgataaggaagagatcccgtgatcaccttaactaagtgatcagatccaatgttaatcaacagagg---------------------gggcgaggtggcatgtgcttcctggcatggcactatatgaatcacacaacattac
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           393104 117 +  18854210 TGACGAGG-AGAGATCTAGTTGTCACCTCAACCAAAAGACCAAACCCTCCTTT-ACTAACATA-G---------------------GAGAAAAGTAGCACATGCTTCCTGGTACACCACCATACGAATTACACGGCATTAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58138181 101 -  94987271 GGAGGAAGGAGAGAGCCAGTGTTCACCTTGACCACGTAACCAA-----------GCCAGCCAGTC-----------------------------TGGCACAGGTCTCCCGAGGAGGAACCATGTGAGCTAAGCACCATCAC
i mm10.chr17               C 0 I 132
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e saiBol1.JH378341           334575 1802 +    515838 I

a score=655849.000000
s hg38.chr6_GL000254v2_alt  1546646  79 +   4827813 ctatgaagtgtttgtgccaaaaatgtttgacttgaatgaa--tctag----tcaagactttagatctaac----------------------------------------------------------------------------ttccagtttat-aaaa
s panTro5.chr6             30416472  79 + 175400573 ctatgaagtttttgtgccaaaaatgtttgacttgaatgaa--tctag----tcaagactttagatctaac----------------------------------------------------------------------------ttccagtttat-aaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30650695  79 + 173848474 ctatgaagtttttgtgccaaaaatgtttgacttgaatgaa--tctag----tcaagactttagatctaac----------------------------------------------------------------------------ttccagtttat-aaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     358727  79 +   2037526 ctatgaagtttttgtgccaaaaatgtttgacttgaatgaa--tctag----tcaagattttagatctaac----------------------------------------------------------------------------ttccagtttat-aaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75022086  79 + 122973662 ctatgaagtttttgtgccaaaaatgtttcacttgaatgaa--tctag----tcaagcctttagatctaac----------------------------------------------------------------------------ttccagtttat-aaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30911915  79 + 172585720 ctatgaagtttttgtgccaaaaatgtttgccttgaatgaa--tctag----tcaagtctttagctctaac----------------------------------------------------------------------------ttccagtttat-aaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30201469  79 - 170955103 ctatgaagtttttgtgccaaaaatgtttgccttgaatgaa--tctag----tcaagtctttagctctaac----------------------------------------------------------------------------ttccagtttat-aaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     450383  79 +   1495729 ctatgaagtttttgtgccaaaaatgtttgccttgaatgaa--tctag----tcaagtctttagctctaac----------------------------------------------------------------------------ttccagtttat-aaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     553986  80 -    863181 cgatgaagtttttgtgccaaaaatgtttgacttgaatgaa--tctag----tcaagtctttagatctaac----------------------------------------------------------------------------ttccagtttataaaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29700664  79 -  71996105 ctatgaagtttttgtgccaaaaatgtttgccttgaatgaa--tctag----tcaagtctttagatctaac----------------------------------------------------------------------------ttccagtttat-aaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     437345  79 -    735854 cgatgaagtttttgtgccaaaaatgtttgacttgaatgaa--tctag----tcaagtctttagatctaac----------------------------------------------------------------------------ttccagtttat-aaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     343553  79 -   1829203 ctatgaagtttttgtgccaaaaatgtttgacttgaatgaa--tctag----tcaagtctttagaactaac----------------------------------------------------------------------------ttccagtttat-aaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30531227  79 + 171630274 ccatgaag--tttgtgccaaaaacgtttgacttgaatgaaaggctgg----tcaagcctttagatataac----------------------------------------------------------------------------ttccagtttgt-agaa
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     964864  79 -   1771730 ccatgaag--tttgtgccaaaaacgtttgacttgaatgaaaggctag----tcaagtctttagatctaac----------------------------------------------------------------------------ttccagtttgt-agaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     149454  79 -    486031 ccatgaag--tttgtgccaaaaacgtttgacttgaatgaaaggctag----tcaagcctttagatctaac----------------------------------------------------------------------------ttccagtttgt-agac
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           393221 159 +  18854210 CTATGAAATGTTAATGCTAGAAATGTTTGACTTggccagg--tatggtggctcatgtctgtaatcctagcactatgcactctgggaggctgaggcagatagattgcttgagctcaaaagtccgagaccagcctgagccagagtgtgatccagtctct-aaaa
i otoGar3.GL873550         C 0 I 236
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58138282 132 -  94987271 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e saiBol1.JH378341           334575 1802 +    515838 I

a score=102348.000000
s hg38.chr6_GL000254v2_alt  1546725 10 +   4827813 aatataaagg
s panTro5.chr6             30416551 10 + 175400573 aatataaagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30650774 10 + 173848474 aatataaagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     358806 10 +   2037526 aatataaagg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75022165 10 + 122973662 aatataaagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30911994 10 + 172585720 aatataaagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30201548 10 - 170955103 aatataaagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     450462 10 +   1495729 aatataaagg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     554066 10 -    863181 aaaataaagg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29700743 10 -  71996105 aatataaagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     437424 10 -    735854 aatataaagg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     343632 10 -   1829203 aatataaagg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30531306 10 + 171630274 aatatgaagg
i calJac3.chr4             C 0 I 278
s cebCap1.NW_016107755v1     964943 10 -   1771730 aatatgaagg
i cebCap1.NW_016107755v1   C 0 I 2
s aotNan1.NW_018496901v1     149533 10 -    486031 aatatgaagg
i aotNan1.NW_018496901v1   C 0 I 2
s otoGar3.GL873550           393616 10 +  18854210 aatatgaagg
i otoGar3.GL873550         I 236 I 2
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58138282 132 -  94987271 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e saiBol1.JH378341           334575 1802 +    515838 I

a score=900691.000000
s hg38.chr6_GL000254v2_alt  1546735 96 +   4827813 aaaggaatactctgaagtatgttataactgaaaaagtaccgatggaggaattaaaccacaccataaggaaagaaccagataaatccagaatgctgg
s panTro5.chr6             30416561 96 + 175400573 aaaggaatactctgaagtatgttacaactgaaaaagtaccgatggaggaattaaaccacaccatgaggaaagaaccagataaatccagaatgctgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30650784 96 + 173848474 aaaggaatactctgaagtatgttacaactgaaaaagtaccgatggaggaattaaaccacaccatgaggaaagaaccagataaatccagaatgctgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     358816 96 +   2037526 aaaggaatactctgatgtatgttacaactgaaaaagtaccgatggaggaattaaaccacaccatgaggaaagaaccagataaatccagaatgctgg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75022175 96 + 122973662 aaaggaatactctgaagtatgttacaactgaaaaagtaccgatggaggaattaaaccacaccatgaggaaagaaccagataaatccagaatgcagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30912004 96 + 172585720 aaaggagtactctgaagtatgttacaactgaaaaagtactgatggaggagttaaaccacaccatgaggaaagaatcagataaatccagaatgctgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30201558 96 - 170955103 aaaggagtactctgaagtatgttacaactgaaaaagtaccgatggaggagttaaaccacaccatgaggaaagaatcagataaatccagaatgctgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     450472 96 +   1495729 aaaggaatactctgaagtatgttacaactgaaaaagtaccgatggaggagttaagccacaccatgaggaaagaatcagatgaatccagaatgctgg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     554076 96 -    863181 aaaggaatactctgaagtatgttacaactgaaaaagtaccaatggaggagttaaaccacaccatgaggaaagaatcagataaatccagaatgctgg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29700753 96 -  71996105 aaaggaatactctgaagtatgttacaactgaaaaagtaccgatggaggagttaaaccacaccatgaggaaagaatcagatgaatccagaatgctgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     437434 96 -    735854 aaaggaatactctgaagtatgttacaactgaaaaagtaccgatggaggagttaaaccacaccatgaggaaagaatcagataaatccagaatgctgg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     343642 96 -   1829203 aaaggaatactctgaaatatgttacaactgaaaaagtactgatggaggagttaaaccacaccacgaggaaagaatcagataaatccagaatgctgg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30531594 89 + 171630274 aagagaaTACTCTGAAGTATGTTACAACTGAAAAAGTACTAATGGAGGAGTT-------Tccatgaggaaacaactagaaaaatccagaatgccgg
i calJac3.chr4             I 278 C 0
s cebCap1.NW_016107755v1     964955 89 -   1771730 aaaagaatactctgaagtatgttacaactgaaaaagtactaatggaggagtt-------tccacgaggaaacaactagaaaaatccagaatgctgg
i cebCap1.NW_016107755v1   I 2 C 0
s aotNan1.NW_018496901v1     149545 89 -    486031 aaaaggatattctgaagtatgttacaactgaaaaagtactaatggaggagtt-------tccacgaggaaacaactagaaaaatccagaatgccgg
i aotNan1.NW_018496901v1   I 2 C 0
s otoGar3.GL873550           393628 96 +  18854210 aaaggaacattttgcagtatggtacaaatgaaaaactgctgagaggggagttaaatcacaccatggggaaacaatcagataaatccagaatgtggg
i otoGar3.GL873550         I 2 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58138282 132 -  94987271 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e saiBol1.JH378341           334575 1802 +    515838 I

a score=1223725.000000
s hg38.chr6_GL000254v2_alt  1546831 145 +   4827813 acattgcacat-ggcaactggcctagtcttttaaaaagtcaatgtcata-aaaaaaaaccttcgaaagaactgcttttgatttttacagactaaagagaaataata------accaaatgc--------aatacgtgaaccttgattggatcctgt-----aaaaa
s panTro5.chr6             30416657 145 + 175400573 acattgcacat-ggcaactggcctagtcttttaaaaagtcaatgtcata-aaaaaaaaccttcgaaagaactgcttttgatttttacagactaaagagaaataata------accaaatgt--------aatacgtgaaccttgattggatcctgt-----aaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30650880 145 + 173848474 acattgcacat-ggcaactggcctagtcttttaaaaagtcaatgtcata-aaaaaaaaccttcgaaagaactgcttttgatttttacagactaaagagaaataata------accaaatgt--------aatacgtgaaccttgattggatcctgt-----aaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     358912 144 +   2037526 acattgcacat-ggcaactggcctagtcttttaaaaggtcaatgtcat--aaaaaaaaccttcgaaagaactgcttttgatttttacagactaaagagaaataata------accaaatgc--------aatacgtgaaccttgattggatcctgt-----aaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75022271 144 + 122973662 acattgcacat-ggcaactggcccagtcttttaaaaagtcagtgtcat--aaaaaaaaccttcgaaagaactgctcttgatttttacagactaaagagaaataata------accaaatgc--------aatacgtgaaccttgattggaccctgt-----aaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30912100 147 + 172585720 acagttcacat-ggcaactggtctagtcttttaaaaagtcaatgtcat----aaaaaaacttcaaaggaactgctcttgatttttacagactaaagagaaatagta------aacaaatgt--------aatacatgaaccttgattggatcctgcaaaaaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30201654 145 - 170955103 acagttcacat-ggcaactggtctagtcttttaaaaagtcaatgtcat----aaaaaaacttcaaaggaactgctcttgatttttacagactaaagagaaatagta------aacaaatgt--------aatacatgaaccttgattggatcctgc--aaaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     450568 143 +   1495729 agagctcacat-ggcaactggtctagtcttttaaaaagtcaatgtcat----aaaaaaacttcaaaggaactgctcttgatttttacagactaaagagaaatagta------aacaaatgt--------aatacatgaaccttgattggatcctgc----aaaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     554172 145 -    863181 acagttcacat-ggcaactggtctagtcttttaaaaagtcaatgtcat---aaaaaaaacttcacaggaactgctcttgatttttacagactaaagagaaataata------aacaaatgt--------aatatgtaaaccttgattggatcctgc---aaaaaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29700849 144 -  71996105 acagctcacat-ggcaactggtctagtcttttaaaaagtcaatgtcat----aaaaaaacttcaaaggaactgctcttgatttttacagactaaagagaaatagta------aacaaatgt--------aatacatgaaccttgattggatcctgc---aaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     437530 142 -    735854 acagttcacat-ggcaactggtctagtcttttaaaaagtcaatgtcat---aaaaaaaacttcacaggaactgctcttgatttttacagactaaagagaaataata------aacaaatgt--------aatatgtgaaccttgattggatcctgc------caaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     343738 139 -   1829203 acagttcacat-ggcaactggtctagtcttttaaaaagtcaatgtcat----aaaaaaacttcaaaggaactgctcttgatttttacagactaacgagaaataata------aacaaatgt--------aatacgtgaaccttgattggatcctgc--------aa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30531683 139 + 171630274 acatttcacat-ggcaactggcctaatcttcaaaaaagtcaatgtcat--aaaaaaaagctttgaaagaattgctgttgatttttacagactaaagagaaataata------atcaaatgc--------aatatgtgaaccttgattggatcccgt----------
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     965044 139 -   1771730 acatttcacat-ggcaactggcctaatctttaaaaaagtcaatgtctt--aaaaaaaaactttgaaagaattgctcttgatttttacagactaaagagaaataata------accaaatgc--------aatatgtgaaccttgattggatcccgt----------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     149634 139 -    486031 acatttcacat-ggcaactggcctaatctttaaaaaagtcaatgtcat--aaaaaaaaaccttgaaagaattgctcttgatttttacagactaaagagaaagaata------accaaatgc--------aatatgtgaaccttgattggatgctgt----------
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           393724 136 +  18854210 acattccacaa-aacaactggcctggtcttttataaagtcaatgtcat-----aaaagattgaaaaaggattgttcttgattctaaaagactaaagagaaataata------accaaatgc--------aatgtgtgaactgtgatttgattctgG----------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58138414 145 -  94987271 acgtgacacacagacaaacgtgcaggcatttaaaataatccccctcatacacacaaagaaataaaaaAAAT----------------AAAATAAAAACAAACACTATCACCTATGAAGTTTATTTTCCAAAAATGTTTGACTTGATTGAACTTCAC-----AAAAA
i mm10.chr17               I 132 I 373
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e saiBol1.JH378341           334575 1802 +    515838 I

a score=254956.000000
s hg38.chr6_GL000254v2_alt  1546976 36 +   4827813 g--aaa-----------------aaaaaggttataaaaatagtcttggaactatt
s panTro5.chr6             30416802 36 + 175400573 g--aaa-----------------aaaaaggttataaaaatagtcttggaactatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30651025 36 + 173848474 g--aaa-----------------aaaaggttaataaaaatagtcttggaactatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     359056 36 +   2037526 g--aaa-----------------aaaaaggttataaaaatagtcttggaactatt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75022415 38 + 122973662 gaaaaa-----------------aaaaaggttataaaaatagtcttggaactatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30912247 36 + 172585720 a--aaa-----------------aaaaaggttataaaaatagtcttggaactatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30201799 36 - 170955103 a--aaa-----------------aaaaaggttataaaaatagtcttggaactatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     450711 36 +   1495729 a--aaa-----------------aaaaaggttataaaaatagtcttggaactatt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     554317 36 -    863181 a--aaa-----------------aaaaaggttataaaaatagtcttggaactatt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29700993 36 -  71996105 a--aaa-----------------aaaaaggttataaaaatagtcttggaactatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     437672 36 -    735854 a--aaa-----------------aaaaaggttataaaaatagtcttggaactatt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     343877 36 -   1829203 a--aaa-----------------aaaaaggttataaaaatagtcttggaactatt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30531822 50 + 171630274 ---ttgtttttcgt--tttttttatataggctataaaaatagtcttggaactatt
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     965183 52 -   1771730 ---ttgtttttctttctttttttttataggctataaaaatagtcttggaactatt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     149773 48 -    486031 ---ttgtttttc----tttttttttataggctataaaaatagtcttggaactact
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           393860 48 +  18854210 ---AGG---CCCTGGTGTTTTTTAAAAAGGCTA-AAAAATATTCTAGGGATTATT
i otoGar3.GL873550         C 0 I 2077
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58138559 373 -  94987271 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e saiBol1.JH378341           334575 1802 +    515838 I

a score=399470.000000
s hg38.chr6_GL000254v2_alt  1547012 65 +   4827813 gtgggaaatttgtaagtaggctgggtgttagatcatattaaaaaatta-t---ttcctctct------------ttctttt
s panTro5.chr6             30416838 63 + 175400573 gtgggaaatttgtaagtagactgggtgttggatcatattaaaaaatta-t---ttcctctct------------ttc--tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30651061 63 + 173848474 gtgggaaatttgtaagtagactgggtgttggatcatattaaaaaatta-t---ttcctctct------------ttc--tt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     359092 63 +   2037526 gtgggaaatctgtaagtagactgggtgttggatcatattaaaaaatta-t---ttcctttct------------ttt--tt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75022453 63 + 122973662 gtgggaaatttgtaaatagactgggtgttggatcatattaaaaaatta-t---ttcctttct------------ttc--tt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30912283 75 + 172585720 gtgggaaatttgaaaatagattggctgttggatcatattaaacaatta-T---TTCCTTTCTtttatttatttattt--at
i rheMac8.chr4             C 0 I 3
s macFas5.chr4             30201835 75 - 170955103 gtgggaaatttgaaaatagattggctgttggatcatattaaacaatta-T---TTCCTTTCTtttatttatttattt--at
i macFas5.chr4             C 0 I 3
s macNem1.NW_012012100v1     450747 63 +   1495729 gtgggaaatttgaaaatagattggctgttggatcatattaaacaatta-t---ttcctttct------------ttc--tt
i macNem1.NW_012012100v1   C 0 I 3
s cerAty1.NW_012002535v1     554353 64 -    863181 gtgggaaatttgaaaatagattgggtgttggatcatattaaacaattatt---tttctttct------------ttt--at
i cerAty1.NW_012002535v1   C 0 I 3
s chlSab2.chr17            29701029 67 -  71996105 gtgggaaatttgaaaatagattggctgttggatcatattaaacaattattttctttctttct------------ttt--at
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012107142v1     437708 64 -    735854 gtgggaaatttgaaaatagattgggtgttggatcatattaaacaattatt---tttctttct------------ttt--at
i manLeu1.NW_012107142v1   C 0 I 3
s colAng1.NW_012115577v1     343913 63 -   1829203 gtgggaaatttgaaaatagattgggtgttggatcatattaaacaatta-t---tTCCtttct------------ttc--tt
i colAng1.NW_012115577v1   C 0 M 7546
s calJac3.chr4             30531872 53 + 171630274 gtgggaaatttgaaaatagactgagtgttggatcatataaaaaaatta-t---ttcc------------------------
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     965235 52 -   1771730 gtgggaaatttaaaaatagactgagtgttggatcatat-aaaaaatta-t---ttcc------------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     149821 53 -    486031 gtgggaaatttgaaaatagactgagtgttggatcatataaaaaaatta-t---ttcc------------------------
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58138559 373 -  94987271 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e saiBol1.JH378341           334575 1802 +    515838 I
e otoGar3.GL873550           393908 2077 +  18854210 I

a score=15324.000000
s hg38.chr6_GL000254v2_alt  1547077 9 +   4827813 ttttttttt
s panTro5.chr6             30416901 9 + 175400573 ttttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30651124 9 + 173848474 ttttttttt
i panPan2.chr6             C 0 I 2
s gorGor5.CYUI01015528v1     359155 9 +   2037526 ttttttttt
i gorGor5.CYUI01015528v1   C 0 I 2
s nomLeu3.chr1a            75022516 9 + 122973662 ttttttttt
i nomLeu3.chr1a            C 0 I 2
s rheMac8.chr4             30912361 8 + 172585720 tttattta-
i rheMac8.chr4             I 3 I 1
s macFas5.chr4             30201913 8 - 170955103 tttattta-
i macFas5.chr4             I 3 I 1
s macNem1.NW_012012100v1     450813 8 +   1495729 tttttttt-
i macNem1.NW_012012100v1   I 3 I 1
s cerAty1.NW_012002535v1     554420 8 -    863181 tttattta-
i cerAty1.NW_012002535v1   I 3 I 1
s chlSab2.chr17            29701099 8 -  71996105 tttattta-
i chlSab2.chr17            I 3 I 1
s manLeu1.NW_012107142v1     437775 8 -    735854 tttattta-
i manLeu1.NW_012107142v1   I 3 I 1
s calJac3.chr4             30531925 5 + 171630274 --ttttt--
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     965287 7 -   1771730 ttttttt--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     149874 6 -    486031 -tttttt--
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58138559 373 -  94987271 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e saiBol1.JH378341           334575 1802 +    515838 I
e otoGar3.GL873550           393908 2077 +  18854210 I
e colAng1.NW_012115577v1     343976 7546 -   1829203 M

a score=171531.000000
s hg38.chr6_GL000254v2_alt  1547086 33 +   4827813 tt--tttttgagacagggtcttactc-tgtccccca
s panTro5.chr6             30416910 33 + 175400573 tt--tttttgagacagggtcttactc-tgtccccca
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     359166 33 +   2037526 tt--tttttgagacagggtcttactc-tgtccccca
i gorGor5.CYUI01015528v1   I 2 C 0
s nomLeu3.chr1a            75022527 30 + 122973662 -----ttttgagacagggtcttactc-tgtccccca
i nomLeu3.chr1a            I 2 C 0
s rheMac8.chr4             30912370 34 + 172585720 tta-tttttgagacagggttttactc-tgtccccca
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30201922 33 - 170955103 tt--attttgagacagggtcttactc-tgtccccca
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     450822 33 +   1495729 tt--tttttgagacagggtcttactc-tgtccccca
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     554429 35 -    863181 ttattttttgagacagggtcttactc-tgtccccca
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29701108 33 -  71996105 tt--tttttgagacagggtcttactc-tgtccccca
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1     437784 18 -    735854 t-----------------tcttactc-tgtccccca
i manLeu1.NW_012107142v1   I 1 C 0
s calJac3.chr4             30531930 34 + 171630274 tt--tttttgagacagggtcttaatcttgtccccta
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     965294 34 -   1771730 tt--tttttgagacagggtcttactcttgtccccta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     149880 34 -    486031 tt--tttttgagacagggtgttactcttgtccccta
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58138559 373 -  94987271 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e saiBol1.JH378341           334575 1802 +    515838 I
e otoGar3.GL873550           393908 2077 +  18854210 I
e colAng1.NW_012115577v1     343976 7546 -   1829203 M
e panPan2.chr6             30651133  2 + 173848474 I

a score=520202.000000
s hg38.chr6_GL000254v2_alt  1547119 109 +   4827813 gagtgcagtggaactatctgggctcactgcaac--ctcggcctccctggctcaagcaatcttctcatctcaggctcccgagttgctgcaacaacaggtgcatactaccaca
s gorGor5.CYUI01015528v1     359199 109 +   2037526 gagtgcagtggaactatcttggctcactgcaac--ctctgcctccctggctcaagcaatcttctcatctcaggctcccaagttgctgcaacaacaggtgcatgctaccaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75022557 109 + 122973662 gagtgcagtggaactatcttggcttactgcaac--ctctgcctccctggctcaatcaatcttctcatctcaggctcccgagctgatgcaacaacaggtgcatgctaccaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30912404 111 + 172585720 gagtgcagtggaactatcttggctcactgcaacctctctgcctccctggctcaagcaatcctcttatcttagcctcccgagctgctgcaacaacaggtgcacgctaccaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30201955 106 - 170955103 gagtgcagtggaactatcttggctcactgcaacctctctgcctccctggctcaagcaatcc-----tcttagcctcccgagctgctgcaacaacaggtgcacgctaccaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     450855 111 +   1495729 gagtgcagtggaactatcttggctcactgcaacctctctgcctccccggctcaagcaatcctcatatcttagcctcctgagctgctgcaacaacaggtgcacgctaccaca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     554464 109 -    863181 gagtacagtggaactatcttggctcactgcaac--ctctgcctccctggctcaagcaatcctcttatcttagcctcctgagctgctgcaacaacagctgcatgctaccaca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29701141 106 -  71996105 gagtgcagtggaactatcttggctcactgcaacctctctgcctccctggctcaagcaatcc-----tcttagcctcccgagctgctgcaacaacaggtgcacgctaccaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     437802 109 -    735854 gagtgcagtggaactatcttggctcactgcaac--ctctgcctccctggctcaagcaatcctcttatcttagcctcctgagctgctgcaacaacagctgcatgctaccaca
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30531964  95 + 171630274 cagtccagtggaactatcttggttcactgcaac--ctacacctccctagctcgagaaatcctctcatctcagcctcccgagttgctgtgacaacagg--------------
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     965328 109 -   1771730 cagtccagtggaactatcttggttcactgcaac--ctacatctccctagctcgagaaatcctctcacctcagcctcctgagttgctgcgacaacaggcacatgctactgca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     149914 109 -    486031 cagtccagtggagctatcttggttcactgcagc--ctacatctccctagctcaagaaatcctctcatctcagcctcccgagttgctgcgacaacaggcacatgctactgca
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58138559 373 -  94987271 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e saiBol1.JH378341           334575 1802 +    515838 I
e otoGar3.GL873550           393908 2077 +  18854210 I
e colAng1.NW_012115577v1     343976 7546 -   1829203 M
e panPan2.chr6             30651133   2 + 173848474 I
e panTro5.chr6             30416943   0 + 175400573 C

a score=1076113.000000
s hg38.chr6_GL000254v2_alt  1547228 181 +   4827813 cttggctaatttttaaaggtttttgtagagaagagttgccactatattgcccaggctggtctcaaactcctaggctcaagccatcctcccacctcagcctcccaaagtgctgggattataggcatgagcaactgcaccatgtctaaaattattttcttaatggtatttactgaggttatgt
s gorGor5.CYUI01015528v1     359308 178 +   2037526 cttggctaattttcaaaggtttctgtagagaagagttgccactatattgcccaggctggtctcaaactcctaggctcaagccatcctcccacctcagcctcccaaagtgctgggattataggcatgagcaactgcaccatgtctaaaattatt---ttaatggtatttactgaggttatgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75022666 181 + 122973662 cttggctaatttttaaaggtttttgtaaagaaaagttgccactatattgcccaggctggtctcaaactcctaggctcaagccatcctcccacctcagcctcccaaagtgctgggattataggcatgagcaactgcaccatgtctaaaattattttcttaatggtatttattgaggttatgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30912515 181 + 172585720 cttggctaatttttaaaggtttttgtagagaaaagttcccactacattgcccaggctggtctcgaactcctaggctcaagccatcctcccacctcaacctcccaaagtgctgggattataggcatgcgtgactgcaccctgtctaaaattattttcttaatggcatttattgaggttatgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202061 181 - 170955103 cttggctaatttttaaaggtttttgtagagaaaagttcccactacattgcccaggctggtctcgaactcctaggctcaagccatcctcccacctcaacctcccaaagtgctgggattataggcatgcgtgactgcaccctgtctaaaattattttcttaatggcatttattgaggttatgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     450966 181 +   1495729 cttggctaatttttaaaggtttttgtagagaagagttcccactacattgcccaggctggtctcgaactcctaggctcaagccatcctcccacctcaacctcccaaagtgctgggattataggcatgcgtgactgcaccctgtctaaaattattttcttaatggcatttattgaggttatgt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     554573 181 -    863181 cttggctaatttttaaaggtttttgtagagaagagttcccactacattgcccaggctggtctcgaactcctaggctcaagccatcctcctacctcagcctcccaaagtgctgggattataggcatgtgcgactgcaccctgtctaaaattattttcttaatggcatttattgaggttatgt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29701247 181 -  71996105 cttggctaatttttaaaggtttttgtagagaagagttcccactacattgcccaggctggtcttgaactcctaggctcaagccatcctcccacctcagcctcccaaagtgctgggattataggcatgcgtgactgcaccctgtctaaaattattttcttaatggcatttattgaggttatgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     437911 181 -    735854 cctggctaatttttaaaggtttttgtagagaagagttcccactacattgcccaggctggtctcgaactcctaggctcaagccatcctcccacctcagcctcccaaagtgctgggattataggcatgtgcgactgcaccctgtctaaaattattttcttaatggtatttattgaggttatgt
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30532059 176 + 171630274 -----ctaatttttaaaagtttttgtagagaagagttcccactatattgcccaggctggtcttgaactcctaggctcaagccatccttccaactcagcctcccaaagtgctgggattataggcatgagcgactgcaccTTGTCTAAAATTATTTTCTTAATAGCATTTATTGAGGTTACAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           336377 177 +    515838 cctagctaattttttgtatttttagtagagacggggtttcaccatgttgaccaggatggtctcgatctcttgaccttgtg--atccacccgcctcagcctcccaaagtgctgggattacaggcttgagccaccacgcccagcc--AAATTATTTTCTAAATAGCATTTATTGAAGTTACAT
i saiBol1.JH378341         I 1802 C 0
s cebCap1.NW_016107755v1     965437 181 -   1771730 cttggctaattttttaaagtttttgtagaaaagagttcccactatattgcccaggctggtcttgaactcctaggctcaagccatccttccacctcagcctcccaaagtgctgggattataggcgtgagcgactgcaccTTCTCTAAAATTATTTTCGTAATAGCATTTATTGAGGTTACAT
i cebCap1.NW_016107755v1   C 0 I 27
s aotNan1.NW_018496901v1     150023 152 -    486031 cttggctaatttttaaaagtttttgtatagaagagttcccactatattgcccaggctggtcttgaactcgcaggctcaagccatccttccacctcagcctcccaaagtgctgggattataggcatgagcgcctgcacc----cTAAAATTAttttt-------------------------
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58138559 373 -  94987271 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           393908 2077 +  18854210 I
e colAng1.NW_012115577v1     343976 7546 -   1829203 M
e panPan2.chr6             30651133   2 + 173848474 I
e panTro5.chr6             30416943   0 + 175400573 C

a score=9291.000000
s hg38.chr6_GL000254v2_alt  1547409 3 +   4827813 atg
s gorGor5.CYUI01015528v1     359486 3 +   2037526 atg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75022847 3 + 122973662 atg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30912696 3 + 172585720 ATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202242 3 - 170955103 atg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     451147 3 +   1495729 atg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     554754 3 -    863181 atg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29701428 3 -  71996105 atg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     438092 3 -    735854 atg
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30532235 3 + 171630274 AAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           336554 3 +    515838 AAA
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58138559 373 -  94987271 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           393908 2077 +  18854210 I
e aotNan1.NW_018496901v1     150175 0 -    486031 C
e cebCap1.NW_016107755v1     965618 27 -   1771730 I
e colAng1.NW_012115577v1     343976 7546 -   1829203 M
e panPan2.chr6             30651133 2 + 173848474 I
e panTro5.chr6             30416943 0 + 175400573 C

a score=31139.000000
s hg38.chr6_GL000254v2_alt  1547412 15 +   4827813 agaatgccTATACTT--
s gorGor5.CYUI01015528v1     359489 15 +   2037526 agagtgccTATACTT--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75022850 15 + 122973662 agaatgcctatactt--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30912699 13 + 172585720 AGAATGCCTATAC----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202245 13 - 170955103 agaatgcctatac----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     451150 13 +   1495729 agaatgcctatac----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     554757 13 -    863181 agaatgcctatac----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29701431 13 -  71996105 agaatgcctatac----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     438095 13 -    735854 agaatgcctatac----
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30532238 13 + 171630274 TAAATGTATAAAC----
i calJac3.chr4             C 0 I 3
s saiBol1.JH378341           336557 13 +    515838 TAAATAAATGCAT----
i saiBol1.JH378341         C 0 I 3
s mm10.chr17               58138932 15 -  94987271 ATAAAATCTATCC--TG
i mm10.chr17               I 373 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           393908 2077 +  18854210 I
e aotNan1.NW_018496901v1     150175  0 -    486031 C
e cebCap1.NW_016107755v1     965618 27 -   1771730 I
e colAng1.NW_012115577v1     343976 7546 -   1829203 M
e panPan2.chr6             30651133  2 + 173848474 I
e panTro5.chr6             30416943  0 + 175400573 C

a score=417930.000000
s hg38.chr6_GL000254v2_alt  1547427 73 +   4827813 --CTTATTTATTTATTAATATAtttatttattttt---------gagatggagtttttctcttgttgcccaggctggagtgcaa
s gorGor5.CYUI01015528v1     359504 73 +   2037526 --CTTATTTATTTATTAATATAtttatttattttt---------gagatggagtttttctcttgttgcccaggctggagtgcaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75022865 69 + 122973662 --cttaTTTATTT----ATATAtttatttgttttt---------gagatggagtttttctcttattgcccaggctggagtgcaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30912712 72 + 172585720 ---TTATTTATTTATTTACATAtttatttattttt---------gagatggagtttttctcttgttgcccaggctggagtgcaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202258 72 - 170955103 ---ttatttatttatttacatatttatttattttt---------gagatggagtttttctcttgttgcccaggctggagtgcaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     451163 72 +   1495729 ---ttatttatttatttacatatttatttattttt---------gagatggagtttttctcttgttgcccaggctggagtgcaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     554770 68 -    863181 -------ttatttATTTACACAtttatttattttt---------gagatggagtttttctcttgttgcccaggctggagtgcaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29701444 72 -  71996105 ---ttatttatttatttacatatttatttattttt---------gagatggagtttttctcttgttgcccaggctggagtgcaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     438108 68 -    735854 -------ttatttatttacatatttatttattttt---------gagatggagtttttctcttgttgcccaggctggagtgcaa
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30532254 73 + 171630274 --TTTATTTATTCGtttatttatttgtttgttttt---------gagatggagttttcctcttgttgcccaggctggagtgcag
i calJac3.chr4             I 3 C 0
s saiBol1.JH378341           336573 73 +    515838 --CTTATTTATTTATTCAtttatttatttgttttt---------gagatggagttttcctcttgttgcccaggctggagtgcag
i saiBol1.JH378341         I 3 C 0
s cebCap1.NW_016107755v1     965645 73 -   1771730 --tttatttattcgtttacttatttatttgttttt---------gagatggagttttcctcttgttgcccaggctggagtgcag
i cebCap1.NW_016107755v1   I 27 C 0
s aotNan1.NW_018496901v1     150175 53 -    486031 ----------------------ttttttttttttt---------gagatggagtttcactcatgttacacaggctggagtgcaa
i aotNan1.NW_018496901v1   C 0 C 0
s mm10.chr17               58138947 83 -  94987271 ATTCTGTTTTTATTTTTCCTTCTTTTTTTTTTtttcggtttttcgagacagtgcttctct-gtgtagccctggctgtcctggaa
i mm10.chr17               C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           393908 2077 +  18854210 I
e colAng1.NW_012115577v1     343976 7546 -   1829203 M
e panPan2.chr6             30651133  2 + 173848474 I
e panTro5.chr6             30416943  0 + 175400573 C

a score=591648.000000
s hg38.chr6_GL000254v2_alt  1547500 98 +   4827813 tggcgcaatct-ggctcactacaaccttcgcttgccaggttcaagcgattctcctgcctcagcctccctagtagctgggattacaggtgcccaccacca
s gorGor5.CYUI01015528v1     359577 97 +   2037526 tggcgcaatct-ggctcactacaaccttcgcttgccaggttcaagcgattctcctgcctcagcctccctagtagctgggattacaggtg-ccaccacca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75022934 98 + 122973662 tggcacaatct-ggctcactacaaccttcgcttgccaggtccaagtgattctcctgcctcagcctccctagtagctgggattacaggtgcccaccacca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30912784 98 + 172585720 tggcgcaatct-ggctcactacaaccttttcttcccaggttcaagcgattctcctgcctcaacctccctagtagctgggattacaggcgcccaccatca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202330 98 - 170955103 tggcgcaatct-ggctcactacaaccttttcttcccaggttcaagcgattctcctgcctcaacctccctagtagctgggattacaggcgcccaccacca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     451235 98 +   1495729 tggcgcaatct-ggctcactacaaccttttcttcccaggttcaagcgattctcctgcctcaacctccctagtagctgggattacaggcgcccaccacca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     554838 98 -    863181 tggcgcaatct-ggctcactacaaccttttcttcccaggttcaagcgattctcctgcctcagcctccctagtagctgggattacaggtgcccaccacca
i cerAty1.NW_012002535v1   C 0 I 298
s chlSab2.chr17            29701516 98 -  71996105 tggcgcaatct-ggctcactacaaccttttcttcccaggttcaagcaattctcctgcctcaacctccctagtagctgggattacaggcgcccaccacca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     438176 98 -    735854 tggcgcaatct-ggctcactacaatcttttcttcccaggttcaagcgattctcctgcctcagcctccctagtagctgggattacaggtgcccaccacca
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30532327 98 + 171630274 tggcacaaactaggctcactgcaacttccacctcccaggttcaagcaattctcctccctcagtctccctagtagctgggattacagg-aaccgccaaca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           336646 99 +    515838 tggcacaaactagactcactgcaacttccacctcccaggttcaagcaattctcctccctcagcctccctagtagctgggattacaggcacccgccaaca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     965718 99 -   1771730 tggcgcaaactagactcactgcaacttccacctcccgggttcaagcaattctcctccctcagcctccctagtagctgggattataggcacccgccaaca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     150228 99 -    486031 tggcgcgatctcggctcaccgcaacctccgcctcccgggttcaggcaattctcctgcctcagcctcctgagtagctgggattacaggcacgcgccacca
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58139030  0 -  94987271 C
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           393908 2077 +  18854210 I
e colAng1.NW_012115577v1     343976 7546 -   1829203 M
e panPan2.chr6             30651133  2 + 173848474 I
e panTro5.chr6             30416943  0 + 175400573 C

a score=176007.000000
s hg38.chr6_GL000254v2_alt  1547598 39 +   4827813 catccggctaattttttgtagttttagtagagacggggt
s gorGor5.CYUI01015528v1     359674 38 +   2037526 catccggctaa-tttttgtatttttagtagagacggggt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75023032 39 + 122973662 cgtccggctaattttttgtatttttagtagagacggggt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30912882 38 + 172585720 tgtccggctaa-tttttgtatttttagtagagatggggt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202428 38 - 170955103 tgtccggctaa-tttttgtatttttagtagagatggggt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     451333 38 +   1495729 tgtctggctaa-tttttgtatttttagtagagatggggt
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29701614 38 -  71996105 tgtccggctaa-tttttgtatttttagtagagatggggt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     438274 38 -    735854 cgtccggctaa-tttttgtatttttagtagagatggggt
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30532425 38 + 171630274 catctggataattttttgtatttttagtagagac-gggt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           336745 38 +    515838 tatctggctaattttttgtatttttagtagagat-gggt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     965817 38 -   1771730 catctggctattattttgtatttttagtagagat-gggt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     150327 39 -    486031 tgcccagctaattttttttatttttagtagagacggggt
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58139030  0 -  94987271 C
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           393908 2077 +  18854210 I
e colAng1.NW_012115577v1     343976 7546 -   1829203 M
e cerAty1.NW_012002535v1     554936 298 -    863181 I
e panPan2.chr6             30651133  2 + 173848474 I
e panTro5.chr6             30416943  0 + 175400573 C

a score=575953.000000
s hg38.chr6_GL000254v2_alt  1547637  98 +   4827813 ttcaccaggttggccaggc---tggtctcaaactcctgacctcaggtgatccacctgccttggcttcccaaagtgctgggattac-aggtgtgagccaccgc
s gorGor5.CYUI01015528v1     359712  98 +   2037526 ttcaccaggttggccaggc---tggtctcaaactcctgacctcaggtgatccacctgccttggcttcccaaagtgctgggattac-aggcgtgagccaccgc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75023071  98 + 122973662 ttcaccaggttggccaggc---tggtctcaaactcctgacctctggtgatccacctgccttggcctcccaaagtgctgggattac-aggcatgagccaccgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30912920  98 + 172585720 ttcatcaggttggccaggc---tggtctcaaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattac-aggtgtgagccactgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202466  98 - 170955103 tttatcaggttggccaggc---tggtctcaaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattac-aggtgtgagccactgc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     451371  98 +   1495729 tttatcaggttggccaggc---tggtctcaaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattac-aggtgtgagccaccgc
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29701652  98 -  71996105 ttcatcaggttggccaggc---cggtctcaaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattac-aggtgtgagccaccgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     438312 101 -    735854 ttcatcaggttggccaggctggcggtctcaaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattac-aggtctgagccaccgc
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30532463  93 + 171630274 ttcaccaggttggccaggc---tggtctca-----ctgatctcaggtgatccacctgccttggcctcccaaagtgctgggattac-aggcgtgagataccat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           336783  98 +    515838 ttcaccaggttggccaggc---tggtctcaaactcctgatctcaggtgatccacctgccttggcctcccatagtgctgggattac-aggcgtgagataccat
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     965855  99 -   1771730 ttcaccaggttggccaggc---tggtctcaaactcctgatctcaggtgattcacctgccttggcctcccaaagtgctgggattacaaggcgtgagataccgt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     150366  96 -    486031 ttcaccatgttgaccagga---tggtctcgatctcttgacctc--gtgatccacccacctcggcctcccaaagtgctgggattac-aggcgtgagccaccgc
i aotNan1.NW_018496901v1   C 0 I 374
s mm10.chr17               58139030  88 -  94987271 ctcactttgtagaccaggc---tagcctcgaactcagaac---------tccgcctgcctctgcctcccg-agtgctgggattaa-aggcgtgtgccaccac
i mm10.chr17               C 0 I 1
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           393908 2077 +  18854210 I
e colAng1.NW_012115577v1     343976 7546 -   1829203 M
e cerAty1.NW_012002535v1     554936 298 -    863181 I
e panPan2.chr6             30651133   2 + 173848474 I
e panTro5.chr6             30416943   0 + 175400573 C

a score=377339.000000
s hg38.chr6_GL000254v2_alt  1547735  85 +   4827813 gcccgg----------------------------------------------------------------------------------------cTGAGAATACCTG------TATTTCTAGGCAATGGATGCTGTAGTATTTAGAGCTCCATGTCTCCCACCTAATTTGAAATGGttc-
s gorGor5.CYUI01015528v1     359810  85 +   2037526 gcccgg----------------------------------------------------------------------------------------cTGAGAATACCTG------TATTTCTAGGCAATGGATGCTGTAGTATTTAGAGCTCCATGTCTCCCACCTAATTTGAAATGGttc-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75023169  85 + 122973662 gcccgg----------------------------------------------------------------------------------------ctgagaatacctg------tatttctaggcaatggatgctgtagtatttagagctccatgtctcccacctaatttgaaatggttc-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30913018  84 + 172585720 gcccgg----------------------------------------------------------------------------------------cTGAGAATACTTG------TATTTCAAGGCAGTGGATGCTGTAGTATTTAGAGCCTCACGTCTCCCACCCAATTTGAAATGGTT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202564  84 - 170955103 gcccgg----------------------------------------------------------------------------------------ctgagaatacttg------tatttcaaggcagtggatgctgtagtatttagagcctcacgtctcccacccaatttgaaatggtt--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     451469  79 +   1495729 gcccgg----------------------------------------------------------------------------------------ctgagaatac-----------tttcaaggcagtggatgctgtagtatttagagcctcacgtctcccacccaatttgaaatggtt--
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29701750  84 -  71996105 gcccgg----------------------------------------------------------------------------------------ctgagaatacttg------tatttcaaggcagtggatgctgtagtatttagagcctcacgtctcccacccaatttgaaatggtt--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     438413  84 -    735854 gcccgg----------------------------------------------------------------------------------------ctgagaatacctg------tatttcaaggcagtggatgctgtagtatttagagcctcacgtctcccacccaatttgaaatggtt--
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30532556  81 + 171630274 gcccag----------------------------------------------------------------------------------------ccAAGAATACCTG------TATTTCTAGGTAATGGATGCTATAGTGTTTACAGCTT---GTCTCCCACCTACTTTGAAATGATT--
i calJac3.chr4             C 0 I 51
s saiBol1.JH378341           336881  77 +    515838 gcccgg----------------------------------------------------------------------------------------ccAA----ACCTG------TATTTCTAGGCAATGCATGCTGTAGGGTTTACAGCTT---GTCTCCCACCTAATTTGAAATGATT--
i saiBol1.JH378341         C 0 I 51
s cebCap1.NW_016107755v1     965954  81 -   1771730 gcccgg----------------------------------------------------------------------------------------ccAAGAATACCTG------TATTCCTAGGCAATGGATGCTGTAGTGTTTACAGCTT---GTCTCCCACCTAATTTGAAATGATT--
i cebCap1.NW_016107755v1   C 0 I 2
s aotNan1.NW_018496901v1     150836  81 -    486031 gcccgg----------------------------------------------------------------------------------------ccAAGAATACCTG------TATTTCTAGGCAATCGATGCTATAGTGTTCACAGCTT---GTCTCCCACCTAATTTGAAATGATT--
i aotNan1.NW_018496901v1   I 374 I 2
s mm10.chr17               58139119 179 -  94987271 gcctggctCTGATTCTGTTTTTAAAAGGTAGTTATAACAACATTTCAGAGGCTATCAAGAAAAATATAAATGGAGATAATCTTAATGGCACGTACTGAGACTACATGAAAACCTTCTTTTCAGCAGCAGATGCCACCATAGTTAGATCTTCATAACTACAATTTACATTGAAATGGTT-T
i mm10.chr17               I 1 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           393908 2077 +  18854210 I
e colAng1.NW_012115577v1     343976 7546 -   1829203 M
e cerAty1.NW_012002535v1     554936 298 -    863181 I
e panPan2.chr6             30651133   2 + 173848474 I
e panTro5.chr6             30416943   0 + 175400573 C

a score=3171.000000
s hg38.chr6_GL000254v2_alt  1547820 21 +   4827813 ctttc---------------tttttttttttttttg
s gorGor5.CYUI01015528v1     359895 27 +   2037526 ctttct------ttc---tttttttttttttttttg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75023254 29 + 122973662 Ctttct------ttc-tttttttttttttttttttg
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30532688 36 + 171630274 ttttctatcacattcttttttttttttttttttttg
i calJac3.chr4             I 51 C 0
s saiBol1.JH378341           337009 30 +    515838 ttttctatcacattc------ttgtttttttttttg
i saiBol1.JH378341         I 51 C 0
s mm10.chr17               58139298  1 -  94987271 ----C-------------------------------
i mm10.chr17               C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           393908 2077 +  18854210 I
e aotNan1.NW_018496901v1     150917  2 -    486031 I
e cebCap1.NW_016107755v1     966035  2 -   1771730 I
e colAng1.NW_012115577v1     343976 7546 -   1829203 M
e manLeu1.NW_012107142v1     438497  0 -    735854 C
e chlSab2.chr17            29701834  0 -  71996105 C
e cerAty1.NW_012002535v1     554936 298 -    863181 I
e macNem1.NW_012012100v1     451548  0 +   1495729 C
e macFas5.chr4             30202648  0 - 170955103 C
e rheMac8.chr4             30913102  0 + 172585720 C
e panPan2.chr6             30651133  2 + 173848474 I
e panTro5.chr6             30416943  0 + 175400573 C

a score=25834.000000
s hg38.chr6_GL000254v2_alt  1547841 24 +   4827813 agacagggtcttactctgt--ccccc
s panPan2.chr6             30651135 24 + 173848474 agacagggtcttactctgt--ccccc
i panPan2.chr6             I 2 I 1
s gorGor5.CYUI01015528v1     359922 24 +   2037526 agacagggtcttactctgt--ccccc
i gorGor5.CYUI01015528v1   C 0 I 1
s nomLeu3.chr1a            75023283 24 + 122973662 agacagggtcttactctgt--ccccc
i nomLeu3.chr1a            C 0 I 1
s calJac3.chr4             30532724 26 + 171630274 agacggattcttgctctgtcgcgccc
i calJac3.chr4             C 0 I 6
s saiBol1.JH378341           337039 24 +    515838 agatggagtcttgctctgt--cgccc
i saiBol1.JH378341         C 0 I 6
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58139299  0 -  94987271 C
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           393908 2077 +  18854210 I
e aotNan1.NW_018496901v1     150917  2 -    486031 I
e cebCap1.NW_016107755v1     966035  2 -   1771730 I
e colAng1.NW_012115577v1     343976 7546 -   1829203 M
e manLeu1.NW_012107142v1     438497  0 -    735854 C
e chlSab2.chr17            29701834  0 -  71996105 C
e cerAty1.NW_012002535v1     554936 298 -    863181 I
e macNem1.NW_012012100v1     451548  0 +   1495729 C
e macFas5.chr4             30202648  0 - 170955103 C
e rheMac8.chr4             30913102  0 + 172585720 C
e panTro5.chr6             30416943  0 + 175400573 C

a score=21755.000000
s hg38.chr6_GL000254v2_alt  1547865 28 +   4827813 gagtgcagtggaactatcttggctcact
s panTro5.chr6             30416943 28 + 175400573 gagtgcagtggaactatcttggctcact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30651160 28 + 173848474 gagtgcagtggaactatcttggctcact
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01015528v1     359947 28 +   2037526 gagtgcagtggaactatcttggctcact
i gorGor5.CYUI01015528v1   I 1 C 0
s nomLeu3.chr1a            75023308 28 + 122973662 gagtgcagtggaactatcttggctcact
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30913102  2 + 172585720 --------------------------CG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202648  2 - 170955103 --------------------------cg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     451548  2 +   1495729 --------------------------cg
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29701834  2 -  71996105 --------------------------cg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     438497  2 -    735854 --------------------------cg
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30532756 28 + 171630274 gagtgcagtggcgtgatctcggctcact
i calJac3.chr4             I 6 C 0
s saiBol1.JH378341           337069 28 +    515838 gagtgcagtggcgtgatctcagctcact
i saiBol1.JH378341         I 6 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58139299  0 -  94987271 C
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           393908 2077 +  18854210 I
e aotNan1.NW_018496901v1     150917  2 -    486031 I
e cebCap1.NW_016107755v1     966035  2 -   1771730 I
e colAng1.NW_012115577v1     343976 7546 -   1829203 M
e cerAty1.NW_012002535v1     554936 298 -    863181 I

a score=34762.000000
s hg38.chr6_GL000254v2_alt  1547893 4 +   4827813 gcaa
s panTro5.chr6             30416971 4 + 175400573 gcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30651188 4 + 173848474 gcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     359975 4 +   2037526 gcaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75023336 4 + 122973662 gcaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30913104 4 + 172585720 GCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202650 4 - 170955103 gcaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     451550 4 +   1495729 gcaa
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29701836 4 -  71996105 gcaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     438499 4 -    735854 gcaa
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30532784 4 + 171630274 gcaa
i calJac3.chr4             C 0 I 215
s saiBol1.JH378341           337097 4 +    515838 gcaa
i saiBol1.JH378341         C 0 I 215
s cebCap1.NW_016107755v1     966037 4 -   1771730 GCAA
i cebCap1.NW_016107755v1   I 2 C 0
s aotNan1.NW_018496901v1     150919 4 -    486031 GCAA
i aotNan1.NW_018496901v1   I 2 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e mm10.chr17               58139299 0 -  94987271 C
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           393908 2077 +  18854210 I
e colAng1.NW_012115577v1     343976 7546 -   1829203 M
e cerAty1.NW_012002535v1     554936 298 -    863181 I

a score=256107.000000
s hg38.chr6_GL000254v2_alt  1547897 44 +   4827813 AGCAAAATAAAAAGCTAGAAAAGttttc--tggggaggga---gctaca
s panTro5.chr6             30416975 44 + 175400573 AGCAAAATAAAAAGCTAGAAAAGttttc--tggggaggga---gctata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30651192 44 + 173848474 AGCAAAATAAAAAGCTAGAAAAGttttc--tggggaggga---gctaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     359979 44 +   2037526 AGCAAAATAAAAAGCTAGAAAAGttttc--tggggaggga---gctata
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75023340 44 + 122973662 AGCAAAACAAAAAGCTAGAAAAGttttc--tggggaggga---gctata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30913108 46 + 172585720 AGCAAAATAAAAAGCTAGAAAAGttttctgtggagaggga---gctata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202654 46 - 170955103 agcaaaataAAAAGCTAGAAAAGttttctgtggagaggga---gctata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     451554 46 +   1495729 agcaaaataAAAAGCTAGAAAAGttttctgtggagaggga---gctata
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29701840 46 -  71996105 agcaaaataAAAAGCTAGAAAAGttttctgtggagaggga---gctata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     438503 46 -    735854 agcaaaataAAAAGCTAGAAAAGttttctgtggagaggga---gctata
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1     966041 44 -   1771730 AGCAAAATAAAAAGCTAGAAAAGttttc--tggggaggga---gctata
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     150923 44 -    486031 AGCAAAATAAAAAGCTAGAAAAGttttc--tggggaggga---gctata
i aotNan1.NW_018496901v1   C 0 C 0
s mm10.chr17               58139299 44 -  94987271 AGAAAACTGTACAAAAAGAAAAGTT-----TGGGGAAACAAAGGTTATG
i mm10.chr17               C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e saiBol1.JH378341           337101 215 +    515838 I
e otoGar3.GL873550           393908 2077 +  18854210 I
e calJac3.chr4             30532788 215 + 171630274 I
e colAng1.NW_012115577v1     343976 7546 -   1829203 M
e cerAty1.NW_012002535v1     554936 298 -    863181 I

a score=23284.000000
s hg38.chr6_GL000254v2_alt  1547941 3 +   4827813 gtt
s panTro5.chr6             30417019 3 + 175400573 gtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30651236 3 + 173848474 gtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     360023 3 +   2037526 gtt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75023384 3 + 122973662 gtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30913154 3 + 172585720 gtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202700 3 - 170955103 gtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     451600 3 +   1495729 gtt
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29701886 3 -  71996105 gtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     438549 3 -    735854 gtt
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30533003 3 + 171630274 gcc
i calJac3.chr4             I 215 C 0
s saiBol1.JH378341           337316 3 +    515838 gcc
i saiBol1.JH378341         I 215 C 0
s cebCap1.NW_016107755v1     966085 3 -   1771730 gtt
i cebCap1.NW_016107755v1   C 0 I 308
s aotNan1.NW_018496901v1     150967 3 -    486031 gtt
i aotNan1.NW_018496901v1   C 0 I 308
s mm10.chr17               58139343 3 -  94987271 GTT
i mm10.chr17               C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           393908 2077 +  18854210 I
e colAng1.NW_012115577v1     343976 7546 -   1829203 M
e cerAty1.NW_012002535v1     554936 298 -    863181 I

a score=133543.000000
s hg38.chr6_GL000254v2_alt  1547944 16 +   4827813 ttctatcacattctta
s panTro5.chr6             30417022 16 + 175400573 ttctatcacattctta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30651239 16 + 173848474 ttctatcacattctta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     360026 16 +   2037526 ttctatcacattctta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75023387 16 + 122973662 ttctatcacattctta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30913157 16 + 172585720 ttctatcacattctta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202703 16 - 170955103 ttctatcacattctta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     451603 16 +   1495729 ttctatcacattctta
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29701889 16 -  71996105 ttctatcacattctta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     438552 16 -    735854 ttctatcacattctta
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30533006 16 + 171630274 ttctatcacattctta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           337319 16 +    515838 ttctaccacattctta
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     966396 16 -   1771730 ttctaccacattctta
i cebCap1.NW_016107755v1   I 308 C 0
s aotNan1.NW_018496901v1     151278 16 -    486031 ttctatcacattctta
i aotNan1.NW_018496901v1   I 308 C 0
s mm10.chr17               58139346 13 -  94987271 TTCTGATACATTA---
i mm10.chr17               C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           393908 2077 +  18854210 I
e colAng1.NW_012115577v1     343976 7546 -   1829203 M
e cerAty1.NW_012002535v1     554936 298 -    863181 I

a score=173419.000000
s hg38.chr6_GL000254v2_alt  1547960 21 +   4827813 aagaggtctgtagtaaccatc
s panTro5.chr6             30417038 21 + 175400573 aagaggtctgtagtaaccatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30651255 21 + 173848474 aagaggtctgtagtaaccatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     360042 21 +   2037526 aagaggtctgtagtaaccatc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75023403 21 + 122973662 aagaggtctgtagtaaccatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30913173 21 + 172585720 aaggggtctgtagtaaccatc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202719 21 - 170955103 aaggggtctgtagtaaccatc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     451619 21 +   1495729 aaggggtctgtagtaaccatc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     555234 21 -    863181 AAGGGGTCTGTAGTAACCATC
i cerAty1.NW_012002535v1   I 298 C 0
s chlSab2.chr17            29701905 21 -  71996105 aatgggtctgtagtaagaatc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     438568 21 -    735854 aaggggtctgtagtaaccatc
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30533022 21 + 171630274 aaagggtctgtagtaaccatc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           337335 12 +    515838 aa---------agtaaccatc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     966412 21 -   1771730 aaagggtctgtagtaaccatc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     151294 21 -    486031 aaagggtctgtaataaccatc
i aotNan1.NW_018496901v1   C 0 C 0
s mm10.chr17               58139359 18 -  94987271 AAAGGGTCTGTAACCACT---
i mm10.chr17               C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           393908 2077 +  18854210 I
e colAng1.NW_012115577v1     343976 7546 -   1829203 M

a score=621167.000000
s hg38.chr6_GL000254v2_alt  1547981 60 +   4827813 aaaaa---tggttaaatcactgATACAGAGATCatggtgcttgacaccttgt----agaagctcaat
s panTro5.chr6             30417059 60 + 175400573 aaaaa---tggttaaatcactgATACAGAGATCatggtgcttgacaccttgt----agaagctcaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30651276 60 + 173848474 aaaaa---tggttaaatcactgATACAGAGATCatggtgcttgacaccttgt----agaagctcaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     360063 60 +   2037526 aaaaa---tggttaaatcactgATACAGAGATCatggtgcttgacaccttgt----agaagctcaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75023424 60 + 122973662 aaaaa---tggttaaatcactgATACAGAGATCatggtgcttgacagcttgt----agaagctcaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30913194 60 + 172585720 aaaaa---tggttaaatcactgATacagcgatcatggtgcttgacaccttgt----agaagctcaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202740 60 - 170955103 aaaaa---tggttaaatcactgATACAGCGATCATGgtgcttgacaccttgt----agaagctcaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     451640 60 +   1495729 aaaaa---tggttaaatcactgATACAGCGATCATGgtgcttgacaccttgt----agaagctcaat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     555255 60 -    863181 GAAAA---TGCTTAAATCACTGATAcagcgatcatggtgcttgacaccttgt----agaagctcaat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29701926 60 -  71996105 gaaaa---tggttaaatcactgATACAGAGATCATGGTGCTTGACACCTTGT----AGAAGCCCAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     438589 60 -    735854 aaaaa---tggttaaatcactgATacagcgatcatggtgcttgacaccttgt----agaagctcaat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     351548 60 -   1829203 AAAAA---AGGTTAAATCACTGACACAGAGATCatggtgcctgacaccttgt----agaagctcaat
i colAng1.NW_012115577v1   M 7546 C 0
s calJac3.chr4             30533043 60 + 171630274 aaaaa---tggttaaatcactgATACAGATATCATGgtgcttgacaccttgt----agaagctcaat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           337347 42 +    515838 aaaaa---tggttaaatcactgATACAGATATCATGGT----------------------GCTCAAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     966433 60 -   1771730 aaaaa---tgtttaaatcattgATACAGATATCATCGTGCTTGACACTCTGT----AGAAGCTCAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     151315 63 -    486031 aaaaatggtggttaaatcactgATACAGATATCatagtgcttgacaccttgt----agaagctcaat
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           395985 64 +  18854210 AATAA---TGGTTAAATCACTGATACAGAGATCACAGTGCCTGACACTTTGTAGAAAGAAGCTCAAC
i otoGar3.GL873550         I 2077 C 0
s mm10.chr17               58139377 38 -  94987271 ------------CAAGTTGTTGAAAC------CAGAGTATTTAAAACCTTGT----CTAA-------
i mm10.chr17               C 0 C 0
e micMur3.chr6               432717 10836 + 123392446 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I

a score=1157165.000000
s hg38.chr6_GL000254v2_alt  1548041 96 +   4827813 acacatttactgaacaagtgaatGGATTCAGGGGAATTGCAGACAATGTTAGTTGTATAGAACCATTTGTTTTTGAGAGTCTGCCATAACTAGATA
s panTro5.chr6             30417119 96 + 175400573 acacatttactgaacaagtgaatGGATTCAGGGGAACTGCAGACAATGTTAGTTGTATAGAACCATTTGTTTTTGAGAGTCTGCCATAACTAGATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30651336 96 + 173848474 acacatttactgaacaagtgaatGGATTCAGGGGAACTGCAGACAATGTTAGTTGTATAGAACCATTTGTTTTTGAGAGTCTGCCATAACTAGATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     360123 96 +   2037526 acacatttactgaacaagtgaatGGATTCAGGGGAACTGCAAACAATGTTAGTTGTATAGAACCATTTGTTTTTGAGAGTCTGCCATAACTAGATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75023484 92 + 122973662 acacatttactgaacaagtgaatGGATTCAGGGGAACTGCAGACAATGTTAATTGTATAGAACCATTTGTTTTTGAGAGTCTGCCATAAC----TA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30913254 96 + 172585720 acacatttactgaacaagtgaatggattcaggggaactgcagacaacgttaattgtatacaaccatttgtttttgagagtctgccgtaactagata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202800 96 - 170955103 acacatttactgaacaagtgaatGGATTCAGGGGAACTGCAGACAATGTTAATTGTATACAACCATTTGTTTTTGAGAGTCTGCCGTAACTAGATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     451700 96 +   1495729 acacatttaccgaacaagtgaatggattcaggggaactgcagacaacattaattgtatacaaccatttgtttttgagagtctgccgtaactagata
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     555315 96 -    863181 acacatttactgaacaagtgaatAGATTCAGGGGAACTGCAGACAACGTTAATTGTATACAACCATTTGTTTTTGAGAGTCTGCCGTAACTAGATA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29701986 96 -  71996105 ACACATTTACTGAACAAGTGAATGGATTCAGGGGAACTGCAGACGACGTTAATTGTATACAACCATTTGTTTTTGAGAGTCTGCCGTAACTACATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     438649 96 -    735854 acacatttactgaacaagtgaatggattcaggggaactgcagacaacgttaattgtacacaaccatttgtttttgagagtctgccgtaactagata
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     351608 96 -   1829203 acacatttactgaacaagtgaatGGATTCAGGGGAACTGCAGACAATGTTAATCGTATACAACCATTTGTTTTTGAGAGTCTGCCGCAACTAAATA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30533103 95 + 171630274 acatgtctgttaaa-aagtgaatggatTCAGGGGAACTGCAGACAAGGTTAATCGAATAGAACCATTTGTTTTTGAGGGTCTGCCATAACTAGATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           337389 96 +    515838 ACACATCTGTTAAACCAGTGAATGGATTCAGGGAAACTGCAGACAAGGTTAATCGAATAGAACCATTTGTTTTTGAGGGTCTGCCATAACTAGATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     966493 96 -   1771730 ACACATCTGTTAAAAAAGTGAATGGATTCAGGGGAACTGCAGACAAGGTTAAGTGAATAGAACCATTTGTTTTTGAGGGTCTGCCATAACTAGATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     151378 92 -    486031 acacatctgttaaacaagtgaatGGATTGAGGGGAACTGCAGACAAGGTTAATCTAATAGAACCATTTGTTTTTGAGGGTCTGCCATAAC----TA
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               443553 96 + 123392446 ACACATTTGTTGAACACATGAATGGATTTAGAGGAACTGAAGTCAATGTTAATCATATAGAACCATTTTTTTTTGAGAGTCTGCCTTAATTAGACA
i micMur3.chr6             I 10836 C 0
s otoGar3.GL873550           396049 93 +  18854210 --GCACTT-TTGAACAAATTAATGGAATTAGAAGAACTGATGTCAATTATAATTGTATAGAACCATTTGTTTTGGGGAGTCTGCCTTAACTAGACA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58139415 92 -  94987271 -CACTCGTATTGAAATAATGAGTGGGTTTAGAAAAACTAAAGCCAATGTTAACTGTACAGAGTCTTTTGATTCTGGG---TCACCGTAACTTGACA
i mm10.chr17               C 0 I 569
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I

a score=314485.000000
s hg38.chr6_GL000254v2_alt  1548137 24 +   4827813 AATGAAACACAGTACCACTtctat
s panTro5.chr6             30417215 24 + 175400573 AACGAAACACAGTACCACTtctat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30651432 24 + 173848474 AACGAAACACAGTACCACTtctat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     360219 24 +   2037526 AACGAAACACAGTACCACTTCTat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75023576 24 + 122973662 AACAAAACACAGTACCACTtctat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30913350 24 + 172585720 aacgaaacacagtaccacttctat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202896 24 - 170955103 AACGAAACACAGTACCACTTCTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     451796 24 +   1495729 aacgaaacacagtaccacttctat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     555411 24 -    863181 AACGAAACACAGTACCACTtctat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29702082 24 -  71996105 AACGAAACACAGTACCACTtctat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     438745 24 -    735854 aacgaaacacagtaccacttctat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     351704 24 -   1829203 AATGAAACACAGTACCACTtctat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30533198 24 + 171630274 AACAAAACACAGTACCAGTTCTat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           337485 24 +    515838 AACAAAACACAGTACCACTTTTAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     966589 24 -   1771730 AACAAAACACAGTACCACTTCTAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     151470 24 -    486031 AACAAAACGCAGTACCACTtctat
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               443649 24 + 123392446 AATGAAACAAAATACCACCTCTAT
i micMur3.chr6             C 0 I 891
s otoGar3.GL873550           396142 24 +  18854210 AATGAAACACAGTACCACTTCTAT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58139507 569 -  94987271 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I

a score=345879.000000
s hg38.chr6_GL000254v2_alt  1548161 31 +   4827813 gaccaatcccttcccttgcttatacagactc
s panTro5.chr6             30417239 31 + 175400573 gaccaatcccttcccttgcttatacaggctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30651456 31 + 173848474 gaccaatcccttcccttgcttatacaggctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     360243 31 +   2037526 caccaatcccttcccttgcttatacagactc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75023600 31 + 122973662 gaccaatcccttcccttgcttatacagactc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30913374 31 + 172585720 gaccaatcCCTTcccttgcttatacagactc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202920 31 - 170955103 GAccaatcccttcccttgcttatacagactc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     451820 31 +   1495729 gaccaatcCCTTCCCTTGCTTATACAGACTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     555435 31 -    863181 gaccaatcccttcccttgcttatacagactc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29702106 31 -  71996105 gaccaatcccttcccttgcttatacagactc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     438769 31 -    735854 gaccaatcCCTTcccttgcttatacagactc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     351728 31 -   1829203 gaccaatcccttcccttgcttatacagacct
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30533222 31 + 171630274 gatcaatcccttcccttggttatacagactc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           337509 31 +    515838 AACCGATCCCTTcccttggttatacagactc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     966613 31 -   1771730 GActaatcccttcccttggttatacagactc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     151494 31 -    486031 gaccaatcccttcccttggttatacagactc
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           396166 31 +  18854210 ATTCAGTAACATTCCTTGGTTATGCAGACTC
i otoGar3.GL873550         C 0 I 226
e micMur3.chr6               443673 891 + 123392446 I
e mm10.chr17               58139507 569 -  94987271 I
e proCoq1.NW_012149775v1     396784 1502 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I

a score=355502.000000
s hg38.chr6_GL000254v2_alt  1548192 28 +   4827813 cttctgaggaaactgaggctcagcaggg
s panTro5.chr6             30417270 28 + 175400573 cttctgaggaaactgaggctcagcaggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30651487 28 + 173848474 cttctgaggaaactgaggctcagcaggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     360274 28 +   2037526 cttctgaggaaactgaggctcagcaggg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75023631 28 + 122973662 cttctgaggaaactgaggctcagcaggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30913405 28 + 172585720 cttctgaggaaactgaggctcagcaggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202951 28 - 170955103 cttctgaggaaactgaggctcagcaggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     451851 28 +   1495729 CTTCtgaggaaactgaggctcagcaggg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     555466 28 -    863181 cttctgaggaaactgaggctcggcaggg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29702137 28 -  71996105 cttctgaggaaattgaggctcagcaggg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     438800 28 -    735854 cttctgaggaaactgaggctcggcaggg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     351759 28 -   1829203 cttctgaggaaactgaggctcagcaggg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30533253 26 + 171630274 cttctgaggaaac--aggctcagcaggg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           337540 26 +    515838 cttctgaggaaac--aggcttagcaggg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     966644 26 -   1771730 cttctgaggaaac--aggctcagcaggg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     151525 26 -    486031 cttctgaggaaac--aggctcagcaggg
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     398286 28 -   1411461 CTTCtgaggaaactgaggctcagcgggg
i proCoq1.NW_012149775v1   I 1502 C 0
s otoGar3.GL873550           396423 28 +  18854210 CTCCtgaggaaactgaggctcagtggag
i otoGar3.GL873550         I 226 C 0
e micMur3.chr6               443673 891 + 123392446 I
e mm10.chr17               58139507 569 -  94987271 I
e canFam3.chr35            26396751 3175 +  26524999 I

a score=5639702.000000
s hg38.chr6_GL000254v2_alt  1548220 443 +   4827813 ttaagcaacttgcccaagagcacatggctaggaag----cagtgtctggtgccaaggcctctgctcaatccactacactctcttccctacccaggcacactgtaaaatggggtctaataccagctcctttgttaggaagctcagatgaggtcatctacatggaagggctttgtaagcggagtaatgctgacaaaagaaagggggcatatattCTGCTGATACTGACCAAAAGCACCCTAGCCTTAGCTATGACAAACTTTCACATATGGGGTGAGCAATAAAGTGTCCCTGTTGGACAGTAGT-TTTCCTTCTTAGTGATA----GAGG-ATCTCAAGATTTCAGAATTAGGAGAAATGAGGTTGAGT--ATGAGAGATGTGAGCAGACCAGAATAACCGCTCCCCTTCCCCATACACAATTCTGTCAGGTCCAATGCAAAATT------------------------------------------------------------CACCCTC---------------------------------------------------TCC------------------------------------------------------------------------A
s panTro5.chr6             30417298 443 + 175400573 ttaagcaacttgcccaagagcacatggctaggaag----cagtgtctggtgccaaggcctctgctcaatccactacactctcttccctacccaggcacactgtaaaatggggtctaataccagctcctttgttaggaagctcagatgaggtcatctacatggaagggctttgtaagcggagtaatgctgacaaaagaaagggggcatatattCTGCTGATACTGACCAAAAGCACCCTAGCCTTAGCTATGACAAACTTTCACATATGGGGTGAGCAATAAAGTGTCCCTGTTGGACAGTAGT-TTTCCTTCTTAGTGATG----GAGG-ATCTCAAGATTTCAGAATTAGGAGAAATGAGGTTGAGT--ATGAGAGATGTGAGCAGACCAGAATAACCGCTCCCCTTCCCCATACACAATTCTGTCAGGTCCAATGCAAAATT------------------------------------------------------------CACCCTC---------------------------------------------------TCC------------------------------------------------------------------------A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30651515 443 + 173848474 ttaagcaacttgcccaagagcacatggctaggaag----cagtgtctggtgccaaggcctctgctcaatccactacactctcttccctacccaggcacactgtaaaatggggtctaataccagctcctttgttaggaagctcagatgaggtcatctacatggaagggctttgtaagcggagtaatgctgacaaaagaaagggggcatatattCTGCTGATACTGACCAAAAGCACCCTAGCCTTAGCTATGACAAACTTTCACATATGGGGTGAGCAATAAAGTGTCCCTGTTGGACAGTAGT-TTTCCTTCTTAGTGATG----GAGG-ATCTCAAGATTTCAGAATTAGGAGAAATGAGGTTGAGT--ATGAGAGATGTGAGCAGACCAGAATAACCGCTCCCCTTCCCCATACACAATTCTGTCAGGTCCAATGCAAAATT------------------------------------------------------------CACCCTC---------------------------------------------------TCC------------------------------------------------------------------------A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     360302 443 +   2037526 ttaagcaacttgcccaggagcacatggctaggaag----cagtgtctggtgccaaggcctccgctcaatccactacactctcttccctacccaggcacactgtaaaatggggtctaataccagctcctttgttaggaagctcagatgaggtcatctacatggaagggctttgtaagcggagtaatgctgacaaaagaaagggggcatatattCTGCTGATACTGACCAAAAGCACCCTAGCCTTAGCTATGACAAACTTTCACATATGGGGTGAGCAATAAAGTGTCCCTGTTGGACAGTAGT-TTTCCTTCTTAGTGATG----GAGG-ATCTCAAGATTTCAGAATTAGGAGAAATGAGGTTGAGT--ATGAGAGATGTGAGCAGACCAGAATAACCACTCCCCTTCCCCATACACAATTCTGTCAGGTCCAGTGCAAAATT------------------------------------------------------------CACCCTC---------------------------------------------------TCC------------------------------------------------------------------------A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75023659 443 + 122973662 ttaagcaacttgcccaagagcacatggctaggaag----cagtgtctggtgccaaggcctccactcaatccactacactctcttccctacccaggcacactgtaaaatggggtctaataccagctcctttgttaggaagctcagatgaggtcatctacatggaagggctttgtaagcagagtaatgctgacaaaagaaaaggggcatatattCTGCTGATACTGACCAAAAGCACCCTAGCCTTAGCTATGACAAACTTTCACATATGGTGTGAGCAATAAAGTGTCCCTGTTGGACAGTAGT-TTTCCTTCTTAGTGATG----GAGG-CTCTCAAGATTTCAGAATTAGGAGAAATGAGGTTGAGT--ATGAGAGATGTGGGCAGAACAGAATAACTGCTCCCCTTCCCCATACACAATTCTGTCAGGTCCGATGCAAAATT------------------------------------------------------------CACCCTC---------------------------------------------------TCC------------------------------------------------------------------------A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30913433 442 + 172585720 ttaagcaacttgcctaagagcacatggctaggaag----cagtgtctggtgccaaagcctccgctcaatccactacactctcttccctacccaagcacactgtaaaatggggtctaataccagctcctttgttaggaagctcagatgaggtcatctacatggaagggctttgtaagctgagtaatgctgacaaaataaaaggggCATATATTCTGCTGATACTGACC-AAAGCACCCTAGCCTTAGCTATGACTAACTTTCACATATGAGGTGAGCAATAAAGGGTCCCTGCTGGACAGTAGT-TTTCTTTCTTAGTGATG----GAGG-ATCTCAAGATTTCAGAATTAGGAGAAATGAGGTTGAGT--ATGAGAGATGTGAGCAGACCAGAATAACCGCTCCCCTTCCCCATACACAATTCTGTCAGGTCCGATGCAAAATT------------------------------------------------------------CACCCTC---------------------------------------------------TCC------------------------------------------------------------------------A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30202979 442 - 170955103 ttaagcaacttgcccaagagcacatggctaggaag----cagTGTCTGGTGCCAAAGCCTCCGCTCAATCCACTACACTCTCTTCCCTACCCAAGCACActgtaaaatggggtctaataccagctcctttgttaggaagctcagatgaggtcatctacatggaagggctttgtaagctgagtaatgctgacaaaataaaaggggCATATATTCTGCTGATACTGACC-AAAGCACCCTAGCCTTAGCTATGACTAACTTTCACATATGGGGTGAGCAATAAAGGGTCCCTGTTGGACAGTAGT-TTTCTTTCTTAGTGATG----GAGG-ATCTCAAGATTTCAGAATTAGGAGAAATGAGGTTGAGT--ATGAGAGATGTGAGCAGACCAGAATAACCGCTCCCCTTCCCCATACACAATTCTGTCAGGTCCGATGCAAAATT------------------------------------------------------------CACCCTC---------------------------------------------------TCC------------------------------------------------------------------------A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     451879 446 +   1495729 ttaagcaacttgcccaagagcacatggctaggaagcagtcagtgtctggtgccaaagcctccgctcaatccactacacTCTCTTCCCTACCCAAGCACActgtaaaatggggtctaataccagctcctttgttaggaagctcagatgaggtcatctacatggaagggctttgtaagctgagtaatgctgacaaaataaaaggggCATATATTCTGCTGATACTGACC-AAAGCACCCTAGCCTTAGCTATGACTAACTTTCACATATGGGGTGAGCAATAAAGGGTCCCTGTTGGACAGTAGT-TTTCTTTCTTAGTGATG----GAGG-ATCTCAAGATTTTAGAATTAGGAGAAATGAGGTTGAGT--ATGAGAGATGTGAGCAGACCAGAATAACCGCTCTCCTTCCCCATACACAATTCTGTCAGGTCCGATGCAAAATT------------------------------------------------------------CACCCTC---------------------------------------------------TCC------------------------------------------------------------------------A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     555494 442 -    863181 ttaagcaacttgcccaagagcacatggctaggaag----ccgtgtctggtgccaaagcctccgctcaatccactacactctcttccctacccaggcacactgtcaaatggggtctaataccagctcctttgttaggaagctcagatgaggtcatctacatggaagggctttgtaagctgagtaatgctgacaaaagaaaaggggcatatattCTGCTGATACTGACC-AAAGCATCCTAGCCTTAGCTATGACTAACTTTCACATATGGGGTGAGCAATAAAGGGTCCCTGTTGGACAGCAAT-TTTCTTTCTTAGTGATG----GAGG-ATCTCAAGATTTCAGAATTAGGAGAAATGAGGTTGAGT--ATGAGAGATGTGAGCAGACCAGAATAACCGCTCCCCTTCCCCACACACAATTCTGTCAGGTCCGATGCAAAATT------------------------------------------------------------CAGCCTC---------------------------------------------------TCC------------------------------------------------------------------------A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29702165 442 -  71996105 ttaagcaacttgcccaagagcacatggctaggaag----cagtgtctggtgccaaagcctccgctcaatccactacactctcttccctacccaagcacactgtaaaatggggtctaataccagctcctttgttaggaagctcagatgaggtcatctacatggaagggctttgtaagctgagtaatgctgacaaaagaaaaggggcatatattCTGCTGATACTGACC-AAAGCACCCTAGCCTTAGCTATGACTAACTTTCACATATGGGGTGAGCAATAAAGGGTCCCTGTTGGACAGTAGT-TTTCTTTCTTAGTGATG----GAGG-ATCTCAAGATTTCAGAATTAGGAGAAATGAGGTTGAGT--ATGAGAGATGTGAGCAGACCAGAATAACCGCTCCCCTTCCCCATACACAATTCTGTCAGGTCCGATGCAAAATT------------------------------------------------------------CACCCTC---------------------------------------------------TCC------------------------------------------------------------------------A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     438828 442 -    735854 ttaagcaacttgcccaagagcacatggctaggaag----ccgtgtctggtgccaaagcctccgctcaatccactacactctcttccctacccaggcgcactgtcaaatggggtctaataccagctcctttgttaggaagctcagatgaggtcatctacatggaagggctttgtaagctgagtaatgctgacaaaagaaaaggggcatatattCTGCTGATACTGACC-AAAGCACCCTAGCCTTAGCTATGACTAACTTTCACATATGGGGTGAGCAATAAAGGGTCCCTGTTGGACAGTAGT-TTTCTTTCTTAGTGATG----GAGG-ATCTCAAGATTTCAGAATTAGGAGAAATGAGGTTGAGT--ATGAGAGATGTGAGCAGACCAGAATAACCGCTCCCCTTCCCCATACACAATTCTGTCAGGTCCGATGCAAAATT------------------------------------------------------------CACCCTC---------------------------------------------------TCC------------------------------------------------------------------------A
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     351787 443 -   1829203 ttaagcaacttgcccaagagcacatggctaggaag----cagtgtctggtgccaaagcctccgctcaatccactacactctcttccctacccaagcacactgtaaaatggggtctaataccagctcctttgttaggaagctcagatgaggtcatctacatggaagggctttgtaagctgagtaatgctgacaaaagaaaagggacatatattCTGCTGATACTGACCAAAAGCACCCTAGCCTTAGCTATGACTAACTTTCACATATGGGGTGAGCAATAAAGGGTCCCTGTTGGACAGTAGT-TTTCTTTCTTAGTGATG----GAGG-ATCTCAAGATTTCAGAATTAGGAGAAATGAGGTTGAGT--ATGAGAGATGTGAGCAGACCAGAATAACCGCTCCCCTTCCCCATACACAATTCTGTCAGGTCCGATGCAAAATT------------------------------------------------------------CACCCTC---------------------------------------------------TCC------------------------------------------------------------------------A
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30533279 453 + 171630274 tgaagtgacttgtccaagaacacatagctaggaag----cagtgcctggtgccaagccctccactcaatctactacactctcttccctacccaagcacactgtaaaatggggtctaataccagctcctttgttaggaagctcagatgaggtcatctacatggaaaggctttgtaagctgagtaatgctgacaaaagaaaaggggcatatattCTGCTGATACTGACCAAAAGCACCCTAGCCTTAGCTATGAGAAACTTTCACATAAGGGGTGAGCAATAAAGCATCCCTGTTGGATAGTAGT-TTTCCTTTTTAGGGATT----GGGG-ATCTCAAGATTTCAGGATTAGGAGAAATGAGGTTGAGT--ATGAGAGATGTGAGCCGACCAGAATAACCACTCCCTTTCCCCAGATACAACTCTGTCAGGTCTGATGTAAAATT------------------------------------------------------------CACCCTC---------------------------------------------------TC--------------------------------------------------------------TAAAATAAAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           337566 455 +    515838 tgaagtgacttgtccaagagcacatggctaggaag----cagtgcctggtgccaagccctccactcaatccactacactctcttccctacccaagcacactgtagaatggggtctaataccagctcctttgttaggaagctcagatgaggtcatctacatggaaaggctttgtaagctgagtaatgctgacaaaagaaaaggggcatatattCTGCTGATACGGACCAAAAGCACCCTAGCCTTAGCTATGACAAACTTTCACATATGGGGTGAGCAATAAAGCATCCCTGTTAGATAGCACT-TTTCCTTTTTAGGGATT----GGGG-ATCTCAAGATTTCAGAATTAGGAGAAATAGGGTTGAGT--ATGAGAGATATGAGCAGGCCAGAATAACCACTCCCTTTCCCCAAATACAAATCTGTCAGGTCCGATGTAAAATT------------------------------------------------------------CACCCTC---------------------------------------------------TCT------------------------------------------------------------TTAAAAAAAAAAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     966670 515 -   1771730 tgaagtgacttgcccaagagcacatggctaggaag----cagtgcctggtgccaggccctccactcaatccactacactctcttccccacccaagcacactgtaaaatggggtctaataccagctcctttgttaggaagctcagatgaggtcatctacatggaagggctttgtaagctgagtaatgctgacaaaagaaaaggggcatatattCTGCTGATACTGACCAAAAGCACCCTAGCCTTAGCTATGACAAACTTTCACATATGGGGTAAGCAATAAAGCATCCCTGTTGGATAATAGT-TTTCCTTTTTAGGGATT----GGGG-ATCTCAAGATTTCAGAATTAGGAGAAATAAGGTTGAGT--ATGAGAGATGTGAGCAGACCAGAATAACCACTCCCTTTCCCCAAATACAAATCTGTCAGATCCGATGTAAAATT------------------------------------------------------------CACcctc---------------------------------------------------tctagtcacaaactatagaaatgatccctgaaagtatagtcttAAAATTCACCCTCTCTaaaaaaaaaaaaaaaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     151551 462 -    486031 tgaagtgacttgcccaagagcacatggctaggaag----cagtgcctggtgccaagccctccactcaatccactacactctcttccctacccaagcacactgtaaaatggggtctaataccagctcctttgttaggaagctcagatgaggtcatctacatggaagggctttgtaagctgagtaatgctgacaaaagaaaaggggcatatattCTGCTGATACTGACCAAAAGCACCCTAGCCTTAGCTATGACAAACTTTCACATATGGGGTGAGCAATAAAGCATCCCTGTTGGATAGTAGT-TTTCCTTTTTAGGGATT----GGGG-ATCTCAAGATTTCAGAATTAGGAGAAATGAGGTTGAGT--ATGAGAGATGTGAGCAGACCAGAATAACCACTCCCTTTCCCCAAATATAACTCTGTCAGGTCCGATGTAAAATT------------------------------------------------------------CACCCTC---------------------------------------------------TCT-----------------------------------------------------Taaaaaaaaaaaaaaaaaaa
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     398314 435 -   1411461 ctaagcagctt-gccgagagcgcgtggctaggaag----cagggtctggtgccaaggcctctgcccagcccagtaccctctcttccctacccaaacacgctgtaaaatggggtctgattccagctcctttgttaggaggctcagatgaggtcatccacatggaagggctttggaagccgagtagtgctgacgaaagaaaagggGCACGGATTCTGCTGATACCAGCTGACAGCGCCCTGGCCTTCGCTGTGACAAACGTTAACACTGGGGG-----AACCAAGCACCCCTGCTGGACAGCA---TTTTCCTCTTAGTGATGGAAGGAGG-ATCTCCCGATTTCAGAGTTGGGGGAAGTGAGGTTGAGT--GT--GAGCTGTGGGCAGAC-AGGAT-ACCGCTCCCTCTCCCCACACGCAATTCTGCCAGGTCCGATGCAAAACT------------------------------------------------------------CACCCTC---------------------------------------------------TCC------------------------------------------------------------------------A
i proCoq1.NW_012149775v1   C 0 I 78
s otoGar3.GL873550           396451 445 +  18854210 ttaagcaacttccccaagagcacaaggctagaaag----cagtgtctggtgccaagacctctgcccaacccattacactctcttctcTATCCAAATACActgtaaaatggggtctaataccagcttctttgttaggaagctcagatgaggtcatctacatggaagggctttgtaagctgagtagtgctgacaaaagaaaaggggcatatattCTGCTGATACAGACTGAAAGCACCCCAGCCTTAGCTATGACAAACTTTAACACATGAGGTGAACAATAAAGACCTCCCATTGGATAGCAG--TTTTCTTTTTAGTGATGGAAAGAAG-ATCTCAAGATTTCAGAATTATGGGAAGTAAGGGTGAGT--AT--GAAACATGGGCAAACTAGGATAACTGCTCCCTTTCCCCATATGTAACTCTGCCAGAGCCCATGCAAACCTG-----------------------------------------------------------CACCCTC---------------------------------------------------TCC------------------------------------------------------------------------A
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58140076 513 -  94987271 TTAACCATGATGCTGTAGGACACAGAGCCAGGAAT----CAGT-CTAAGTGCCCAAACTTCCGCCCCAGTCA-----------TCCC---------ACACTGTAAAATGGGGCTTGAGACCATCTCCTCTGTTC-AATACCCTGATGGGCTCATCTATACAG-ATGGCTTGGTAAACTGAGCAGAGGTGACAAGAGAAAAGGGGAATGTATTCTTCAGCT-TTGGTTGAAAGCACTCTAGCCTTCACTAC--------------TAAGAGATAA--CAGGAAGCACTCTTGTTAGACAGCACTCTTTGCTTTTTATGGATG----GAAGCAGCTCAAGCTTGCGGAATTAAGAGGAAAAAAGCTGGGTTGAGGGGAAGAGAGGGCAAAGCAG----TCCACACCACTTTCCCATAC-CTACTCCGTCAGGCCCTCCACAAAGCTAGTGttttgtttgatgaggcagagccaggactaagcagctcaagctggccttgaatattctaacctcctgcctttgcctcctgagtactgggatcacaggtgtgtaccTCTGCTGAATTCT------------------------------------------------------------------------A
i mm10.chr17               I 569 C 0
e micMur3.chr6               443673 891 + 123392446 I
e canFam3.chr35            26396751 3175 +  26524999 I

a score=703637.000000
s hg38.chr6_GL000254v2_alt  1548663 70 +   4827813 AAAACTCTTCCCCAACTTACCGCACC------------CTGCTATGGTTCTGCCC--------TTTTATGCCGTCAGTATATTCTCTGTG
s panTro5.chr6             30417741 70 + 175400573 AAAACTCTTCCCCAACTTGCCACACC------------CTGCTATGGTTCTGCCC--------TTTTATACCTTCAGTATATTCTCTGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30651958 70 + 173848474 AAAACTCTTCCCCAACTTGCCACACC------------CTGCTATGGTTCTGCCC--------TTTTATACCTTCAGTATATTCTCTGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     360745 70 +   2037526 AAAACTCTTCCCCAACTTGCCACACC------------CTGCTGTGGTTCTGCCC--------TTTTATGCCTTCAGTATATTCTCTGTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024102 70 + 122973662 AAAACTCTTCCCCAACTTGCCACACC------------CTGCTATGGTTCTGCCC--------TTTTATGCCTTCAGTATATTCTCTGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30913875 74 + 172585720 AAAACTCTTTCCCAACTTGCCACATG------------CTGCTATGGTTCTGCCC----TATTTTTCATGCCTTCAGTATATTCTCTGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30203421 74 - 170955103 AAAACTCTTCCCCAACTTGCCACATG------------CTGCTATGGTTCTGCCC----TATTTTTCATGCCTTCAGTATATTCTCTGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     452325 74 +   1495729 AAAACTCTTCCCCAACTTGCCACATG------------CTGCTATGGTTCTGCCC----TATTTTTCATGCCTTCAGTATATTCTCTATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     555936 74 -    863181 AAAACTCTTCCCCAACTTGCCACACA------------CTGCTATGGTTCTGCCC----TATTTTTCATGCCTTCAGTATATTCTCTGTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29702607 74 -  71996105 AAAACTCTTCCCCAACTTGCCACATG------------CTGCTATGGTTCTGCCC----TATTTTTCATGCCTTCAGTATATTCTCTGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     439270 74 -    735854 AAAACTCTTCCCCAACTTGCCACACG------------CTGCTATGGTTCTGCCC----TATTTTTCATGCCTTCAGTATATTCTCTGTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     352230 74 -   1829203 AAAACTCTTCCCCAACTTGCCACACA------------CTGCTATGGTTCTGCCT----TATTTTTCATGCCTTCAGTATATTCTCTGTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30533732 80 + 171630274 AAAACTCTTCCCCAACTTGCCACACTCCCCCCA------TCCCATGGTTCTGCCC----TTTCTTTTATGCCTTCAGCATATTCTCTGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           338021 81 +    515838 ACAACTCTTCCCCAACTTGCCACACTCCCCCCA-----CCCCCATGGTTCTACCC----TATCTTTTATGCCTTCAGCATATTCTCTGTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     967185 86 -   1771730 aaaaCTCTTCCCCAACTTGCCACACTCCCCCCTGCCCCCCGCCCTGGTTCTGCCC----TATCTTTTATGCCTTCAGCATATTCTCTGTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     152013 78 -    486031 aaaaCTCTTCCCCAACTTGCCACACTCCCC--------GTCCCATGGTTCTGCCC----TATCTTTTATGCCTTCAGCATATTCTCTGTT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           396896 77 +  18854210 -AAATCTCCCCCCAATTTAGCACACT------------CCCCTATGACTTTGCCCTTTCTATTATTTATGCCTTCAGTATATTGCCCCTG
i otoGar3.GL873550         C 0 I 3
s mm10.chr17               58140589 64 -  94987271 AAAGTACTTTCCCAAAC-----CATG------------ATCTCATATTTCT--------TATCATATATATC-TGACCTTGTTCTCTCCG
i mm10.chr17               C 0 C 0
e micMur3.chr6               443673 891 + 123392446 I
e proCoq1.NW_012149775v1     398749 78 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I

a score=545213.000000
s hg38.chr6_GL000254v2_alt  1548733 43 +   4827813 AT---CTCAACAGGTTTCCACAATAAGAG--GTAAAACCATTACCCTT
s panTro5.chr6             30417811 46 + 175400573 ATTATCTCAACAGGTTTCCACAATAAGAG--GTAAAACCATTACCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652028 46 + 173848474 ATTATCTCAACAGGTTTCCACAATAAGAG--GTAAAACCATTACCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     360815 46 +   2037526 ATTATCTCAACAGGTTTCCACAATAAGAG--GTAAAACCATTACCGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024172 46 + 122973662 ATTATCTCAACAGGTTTCCACAATAAGAG--GTAAAACCATTACCCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30913949 46 + 172585720 ATTATCTCAACAGGTTTCCACAATAAGAA--ATAAAACCATTACCCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30203495 46 - 170955103 ATTATCTCAACAGGTTTCCACAATAAGAA--ATAAAACCATTACCCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     452399 46 +   1495729 ATTATCTCAACAGGTTTCCACAATAAGAA--ATAAAACCATTACCCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     556010 46 -    863181 ATTATCTCAACAGGTTTCCACAATAAGAA--GTAAAACCATTACCGTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29702681 46 -  71996105 ATTATCTCAACAGGTTTCCACAATAAGAA--ATAAAACCATTACCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     439344 46 -    735854 ATTATCTCAACAGGTTTCCACAATAAGAA--GTAAAACCATTACCGTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     352304 46 -   1829203 ATTATCTCAACAGGTCTCCACAATAAGAA--GTAAAACCATTACCCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30533812 46 + 171630274 ATTATCACAACAGGTTTCTACAATAAGAG--GTAAAACCATTACCCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           338102 48 +    515838 ATTATCACAACAGGTTTCTACAATAAGAGTTGTAAAACCATTACCCTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     967271 46 -   1771730 ATTACCACAACAGGTTTCTACACTAAGAG--GTGAAACCATTACCCTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     152091 46 -    486031 ATTATCATAACAGGTTTCTACAGTAAGAG--GTAAAACCATTACCCTC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     398827 43 -   1411461 ---ATCTCAAAAGTTTTCTACGATGAGGG--ATAAAACCGTTACTCTC
i proCoq1.NW_012149775v1   I 78 C 0
s otoGar3.GL873550           396976 43 +  18854210 ---AGCTCAATTATGTTCTACAATAAGGG--GCAAAACCATTACTCTC
i otoGar3.GL873550         I 3 C 0
s mm10.chr17               58140653 41 -  94987271 ATCATCTCCACAAGTTCC-----TAAAAA--ATAAAACCATTATCCTA
i mm10.chr17               C 0 C 0
e micMur3.chr6               443673 891 + 123392446 I
e canFam3.chr35            26396751 3175 +  26524999 I

a score=427114.000000
s hg38.chr6_GL000254v2_alt  1548776 28 +   4827813 CTCTCCATTCCTGACTCCTGGGCAGACA
s panTro5.chr6             30417857 28 + 175400573 CTCTCCATTCCTGACTCCTGGGCAGACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652074 28 + 173848474 CTCTCCATTCCTGACTCCTGGGCAGACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     360861 28 +   2037526 CTCTCCATTCCTGACTCCTGGGCAGACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024218 28 + 122973662 CTCTCCATTCCTGGCTCCTGGGCAGACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30913995 28 + 172585720 CTCTCCATTCCTGGCTCCTGGACAGACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30203541 28 - 170955103 CTCTCCATTCCTGGCTCCTGGACAGACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     452445 28 +   1495729 CTCTCCATTCCTGGCTCCTGGACAAACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     556056 28 -    863181 CTCTCCATTCCTGGCTCCTGGACAGACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29702727 28 -  71996105 CTCTCCATTCCTGGCTCCTGGACAGACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     439390 28 -    735854 CTCTCCATTCCTGGCTCCTGGATAGACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     352350 28 -   1829203 CTCTCCATTCCTGGCTCCTGGACAGACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30533858 28 + 171630274 CTATCCATTCCTGGCTCCTGGGCAGACG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           338150 28 +    515838 CTATCCATTCCTGGCTCCTGGGCAGACA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     967317 28 -   1771730 CTATCCATTCCTGGCTCCTGGGCAAACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     152137 28 -    486031 CTATCCATTCCTGGCTCCTGGGCAGACA
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               444564 28 + 123392446 CTCTCCATTCCTGGCTCCTGGGCAGAAA
i micMur3.chr6             I 891 C 0
s proCoq1.NW_012149775v1     398870 28 -   1411461 CTCTCCATTCCTTGCTCCTGGGCAGACA
i proCoq1.NW_012149775v1   C 0 I 164
s otoGar3.GL873550           397019 28 +  18854210 CTCTCCATTCCTGCCTCTTGGGCAGACA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58140694 28 -  94987271 CCCTCTGTTCCTGGCTCAGGCACTGCCA
i mm10.chr17               C 0 C 0
e canFam3.chr35            26396751 3175 +  26524999 I

a score=38304.000000
s hg38.chr6_GL000254v2_alt  1548804 3 +   4827813 -GAA
s panTro5.chr6             30417885 3 + 175400573 -GAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652102 3 + 173848474 -GAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     360889 3 +   2037526 -GAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024246 3 + 122973662 -GAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30914023 3 + 172585720 -GAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30203569 3 - 170955103 -GAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     452473 3 +   1495729 -GAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     556084 3 -    863181 -GAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29702755 3 -  71996105 -GAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     439418 3 -    735854 -GAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     352378 3 -   1829203 -GAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30533886 3 + 171630274 -GAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           338178 3 +    515838 -GAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     967345 3 -   1771730 -GAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     152165 3 -    486031 -GAA
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               444592 3 + 123392446 -GAA
i micMur3.chr6             C 0 I 249
s otoGar3.GL873550           397047 3 +  18854210 -GAa
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58140722 3 -  94987271 TGA-
i mm10.chr17               C 0 C 0
e proCoq1.NW_012149775v1     398898 164 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I

a score=57664.000000
s hg38.chr6_GL000254v2_alt  1548807 5 +   4827813 ACC----aa
s panTro5.chr6             30417888 5 + 175400573 ACC----AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652105 5 + 173848474 ACC----aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     360892 5 +   2037526 ACC----AA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024249 5 + 122973662 ACC----AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30914026 5 + 172585720 ACC----AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30203572 5 - 170955103 ACC----AA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     452476 5 +   1495729 ACC----AA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     556087 5 -    863181 ACC----aa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29702758 5 -  71996105 ACC----aa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     439421 5 -    735854 ACC----aa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     352381 5 -   1829203 ACC----AA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30533889 5 + 171630274 ACC----AA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           338181 5 +    515838 ACC----AA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     967348 5 -   1771730 ACC----AA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     152168 5 -    486031 ACC----AA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           397050 9 +  18854210 accatgaaa
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58140725 5 -  94987271 ACT----TA
i mm10.chr17               C 0 I 552
e micMur3.chr6               444595 249 + 123392446 I
e proCoq1.NW_012149775v1     398898 164 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I

a score=167631.000000
s hg38.chr6_GL000254v2_alt  1548812 19 +   4827813 aatcagagc---caaaaaaaaa
s panTro5.chr6             30417893 19 + 175400573 AATCAGAGC---CAAAAAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652110 19 + 173848474 aatcagagc---caaaaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     360897 19 +   2037526 AATTAGAGC---CAAAAAAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024254 19 + 122973662 AATTAGAGC---CAGAAAAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30914031 19 + 172585720 AATTAGAGC---AAAAAAAaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30203577 17 - 170955103 AATTAGAGC-----AAAAAaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     452481 19 +   1495729 AATTAGAGC---AAAAAAAaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     556092 17 -    863181 aattagagc-----aaaaaaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29702763 19 -  71996105 aattagagc---aaaaaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     439426 19 -    735854 aattagagc---caaaaaaaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     352386 22 -   1829203 AATTAGAGCCAAAAAAAAAaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30533894 19 + 171630274 AATTAGAGC---CAAAAAAAAA
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           338186 19 +    515838 AATTAGAGC---Caaaaaaaaa
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     967353 19 -   1771730 AATTAGAGC---CAAAAAAAAT
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496901v1     152173 19 -    486031 AACTAGAGC---CAAAAAAAAG
i aotNan1.NW_018496901v1   C 0 I 10
s otoGar3.GL873550           397059 15 +  18854210 agtcagagc---cagaca----
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               444595 249 + 123392446 I
e mm10.chr17               58140730 552 -  94987271 I
e proCoq1.NW_012149775v1     398898 164 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I

a score=-41955.000000
s hg38.chr6_GL000254v2_alt  1548831  4 +   4827813 -a-----------------aa-----------c
s panTro5.chr6             30417912  7 + 175400573 -a-----------------aa--------aaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652129  5 + 173848474 -a-----------------aa----------ac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     360916  7 +   2037526 -a-----------------aa--------aaac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024273 15 + 122973662 -A-----------------AAAAAAAaaaaaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30914050  4 + 172585720 -a-----------------aa-----------c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30203594  4 - 170955103 -a-----------------aa-----------c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     452500  4 +   1495729 -a-----------------aa-----------c
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     556109  4 -    863181 -a-----------------aa-----------c
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29702782  1 -  71996105 --------------------------------c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     439445  6 -    735854 -a-----------------aa---------ccc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     352408  4 -   1829203 -a-----------------aa-----------c
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30533914  3 + 171630274 -A-----------------AA------------
i calJac3.chr4             I 1 I 3
s saiBol1.JH378341           338206 20 +    515838 -aaaaaaaaaaaaaaaCCCAA------------
i saiBol1.JH378341         I 1 I 3
s cebCap1.NW_016107755v1     967373  3 -   1771730 -A-----------------AT------------
i cebCap1.NW_016107755v1   I 1 I 11
s otoGar3.GL873550           397074  4 +  18854210 aa-----------------at------------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               444595 249 + 123392446 I
e mm10.chr17               58140730 552 -  94987271 I
e proCoq1.NW_012149775v1     398898 164 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e aotNan1.NW_018496901v1     152192 10 -    486031 I

a score=32120.000000
s hg38.chr6_GL000254v2_alt  1548835 6 +   4827813 ctcaga
s panTro5.chr6             30417919 6 + 175400573 ctcaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652134 6 + 173848474 ctcaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     360923 6 +   2037526 ctcaga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024288 6 + 122973662 ctcgga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30914054 6 + 172585720 ctcaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30203598 6 - 170955103 ctcaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     452504 6 +   1495729 ctcaga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     556113 6 -    863181 ctcaga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29702783 6 -  71996105 ctcaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     439451 6 -    735854 ctcaga
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     352412 6 -   1829203 ctcaga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30533920 5 + 171630274 CACTG-
i calJac3.chr4             I 3 C 0
s saiBol1.JH378341           338229 5 +    515838 CACTG-
i saiBol1.JH378341         I 3 C 0
s otoGar3.GL873550           397078 6 +  18854210 cttaga
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               444595 249 + 123392446 I
e mm10.chr17               58140730 552 -  94987271 I
e proCoq1.NW_012149775v1     398898 164 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e aotNan1.NW_018496901v1     152192 10 -    486031 I
e cebCap1.NW_016107755v1     967376 11 -   1771730 I

a score=1373035.000000
s hg38.chr6_GL000254v2_alt  1548841 148 +   4827813 gatgacccactccaccccca-ctccctttactcagatgagaattctgaacct--------------------------------gaagaagtcacttcatgaactcccttgcaccagaggtc----------------acacaTCC------------------------------------------------------------------------CTGCTGGGGG--------------------------------------------------------------------------------------------TGAGGGGGTATTTT-----------TCT---GTCTCTT------CAATAAACCAGAAGCgg
s panTro5.chr6             30417925 148 + 175400573 gatgacccactccaccccca-ctccctttactcagatgagaattctgaacct--------------------------------gaagaagtcacttcatgaactcccttgcaccagaggtc----------------acacaTCC------------------------------------------------------------------------CTGCTGGGAG--------------------------------------------------------------------------------------------TGAAGGGGCATTTT-----------TCT---CTCTCTT------CAATAAACCAGAAGCgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652140 148 + 173848474 gatgacccactccaccccca-ctccctttactcagatgagaattctgaacct--------------------------------gaagaagtcacttcatgaactcccttgcaccagaggtc----------------acacaTCC------------------------------------------------------------------------CTGCTGGGAG--------------------------------------------------------------------------------------------TGAAGGGGCATTTT-----------TCT---CTCTCTT------CAATAAACCAGAAGCgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     360929 147 +   2037526 gatgacccactccaccccca-ctccctttactcagatgagaattctgaacct--------------------------------gaagaagtcacttcatgaactcccttgcaccagaggtc----------------acacaTCC------------------------------------------------------------------------CTGCTAGG-G--------------------------------------------------------------------------------------------TGAGGGGGCATTTT-----------TCT---GTCTCTT------CAATAAACCAGAAGCAg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024294 146 + 122973662 gatgacccactccaccccca-ctccctttactcagatgagaattctgaacct--------------------------------gaagaagtcacttcatgaactctcttgcaccagaggtc----------------acacaTCC------------------------------------------------------------------------CTG--GGGGG--------------------------------------------------------------------------------------------TGAGGGGGCATTCT-----------TTT---GTCTCTT------CAATAAACCAGAAGCgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30914060 148 + 172585720 gatgacccactccaccccca-ctccctttacccagatgagaattctgaacct--------------------------------gaggaagtctcttcatgaactgccttgcaccagaggtc----------------acacaTCC------------------------------------------------------------------------CTGCTAGGGG--------------------------------------------------------------------------------------------TGAGGGGGCATTCT-----------TCT---GTCTCTT------CAATAAAACAGAAGCgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30203604 147 - 170955103 gatgacccactccaccccca-ctccctttacccagatgagaattctgaacct--------------------------------ga-gaagtctcttcatgaactgccttgcaccagaggtc----------------acacaTCC------------------------------------------------------------------------CTGCTAGGGG--------------------------------------------------------------------------------------------TGAGGGGGCATTCT-----------TCT---GTCTCTT------CAATAAAACAGAAGCgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     452510 147 +   1495729 gatgacccactccaccccca-ctccctttacccagatgagaattctgaacct--------------------------------ga-gaagtctcttcatgaactgccttgcaccagaggtc----------------acacaTCC------------------------------------------------------------------------CTGCTAGGGG--------------------------------------------------------------------------------------------TGAGGGGGCATTCT-----------TCT---GTCTCTT------CAATAAAACAGAAGCgg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     556119 148 -    863181 gatgacccactccaccccca-ctccctttacccagacgagaattctgcacct--------------------------------gaggaagtctcttcatgaactgccttgcaccagaggtc----------------acacaTCC------------------------------------------------------------------------CTGCTAGGGG--------------------------------------------------------------------------------------------TGAGGGGGCATTCT-----------TTT---GTCTCTT------CAATAAAACAGAAGCgg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29702789 148 -  71996105 gatgacccactccaccccca-ctccctttatccagatgagaattctgaacct--------------------------------gaggaagtctcttcatgaactgccttgcaccagaggtc----------------acacaTCC------------------------------------------------------------------------CTGCTAGCGG--------------------------------------------------------------------------------------------TGAGGGGGCATTCT-----------TTT---GTCTCTT------CAATAAAACAGAAGTgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     439457 148 -    735854 gatgacccactccaccccca-ctccctttacccagacgagaattctgaacct--------------------------------gaggaagtctcttcatgaactgccttgcaccagaggtc----------------acacaTCC------------------------------------------------------------------------CTGCTAGGGG--------------------------------------------------------------------------------------------TGAGGGGGCATTCT-----------TTT---GTCTCTT------CAATAAAACAGAAGCGG
i manLeu1.NW_012107142v1   C 0 M 725
s colAng1.NW_012115577v1     352418 151 -   1829203 gatgacccactccaccccca-ctccctttacccagatgagaattctgaacct--------------------------------gaggaagtctcttcatgaactgccttgcaccagaggtc----------------acacaTCC------------------------------------------------------------------------CTGCTGGGGG--------------------------------------------------------------------------------------------CGAGGGGGCATTCT-----------TTTCAAGCCACTT------CAATAAAACAGAAGCgg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30533925 164 + 171630274 GATGACACACTCCACCCCCA-CCCCCTTTACCCAGATGAGAATTCTGAAGCCATCCTCCCACCTGAGG----------------GAGGAAGTCACTTCATGAACTGCCTTGCACCAGAGGTC----------------ACACATCC------------------------------------------------------------------------CTGCTGGGGG--------------------------------------------------------------------------------------------TGAGGGAGCATTCT-----------TTT---GTCTCTT------CAGTAAAGCAGTAGCAg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           338234 180 +    515838 GATAACACACTCCAACCCCA-CCCCCTTTACCCAGATGAGAATTCTGAAGCCATCCTCCCACCTCAGGGAGGAAGTCACTTCATGAGGAAGTCACTTCATGAACTGCCTTGCACCAGAGGTC----------------ACACATCC------------------------------------------------------------------------CTGCTGGGGG--------------------------------------------------------------------------------------------TGAGGGGACATTCT-----------TCT---GTCTCTT------CAGTAAACCAGTAGCAg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     967387 181 -   1771730 GATAACATACTCCACCCCCACCCCCCTTTACCCAGATGAGAATTCTGAAGCCATCCTCCCAGCTCAGGGAGGAAGTCACTTCATGAGGAAGTCACTTCATGAACTGCCTTTCACCAGAGGTC----------------ACACATCC------------------------------------------------------------------------CTGCTGGGGG--------------------------------------------------------------------------------------------TGCGGGGGCATCCT-----------TCT---GTCTCTT------CAGTAAACCAGTAGCAg
i cebCap1.NW_016107755v1   I 11 C 0
s aotNan1.NW_018496901v1     152202 165 -    486031 TATGACACACTCCACCCCCCACTCCTTTTACCCAGATGAGAATTCTGAAGCCATCCTCCCACCTCAGG----------------GAGGAAGTCACTTCATGAACTGCCTTGCACCAGAGGTC----------------ACACATCC------------------------------------------------------------------------CTGCTGGGGG--------------------------------------------------------------------------------------------TGAGGGGGCATTCT-----------TCT---GTCTCTT------CAGTAAACCAGTAGCAg
i aotNan1.NW_018496901v1   I 10 C 0
s otoGar3.GL873550           397084 345 +  18854210 gatgacacagtccatccttt-cctaatttacccagaagtgaattctgaaacta-------------------------------gaagaaatcacct-gtgaattgccTTGCATTAGAAGTCCTAGTCCCGTGTGGGAACCCATTTAAGGGCTCTTGGGGCTCTAGATcaggggtcctcaaactttttaaacagggggcaagttcactgtccctcagactgctggagggccggactGAGGGCCCCAGGAAGCGTCAGCTGCTAAGCAGGACAGGCAGCAGCAGCAAAAACACCCAGTGGGCCAAATAAATGTCCATAGTTTGAGGACGCCTGCTCTAGATTAAACTCT---ATTTCTTAATGTAAAATAAACAAACTGAgg
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               444595 249 + 123392446 I
e mm10.chr17               58140730 552 -  94987271 I
e proCoq1.NW_012149775v1     398898 164 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I

a score=1389341.000000
s hg38.chr6_GL000254v2_alt  1548989 171 +   4827813 ccgggcgcggtggcttctgcctgtaatcctagcactctgggaggcagaggcgggtggatcacctgagatcgggagtttgag----------------------------accagcctgaccaacaa------------ggaga-a--------acccc-atct---------------------------------------ctacta-acaat--------acaaaattagccaggtgtggtggcgcatgcctataatcccagctact
s panTro5.chr6             30418073 171 + 175400573 ccgggcacggtggcttctgcctgtaatcctagcactctgggaggcagaggcgggtggatcacctgagatcgggagtttgag----------------------------accagcctgaccaacaa------------ggaga-a--------acccc-atct---------------------------------------ctacta-acagt--------acaaaattagccaggtgtggtggcgcatgcctgtaatcccagctact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652288 171 + 173848474 ccgggcacggtggcttctgcctgtaatcctagcactctgggaggcagaggcgggtggatcacctgagatcgggagtttgag----------------------------accagcctgaccaacaa------------ggaga-a--------acccc-atct---------------------------------------ctacta-acaat--------acaaaattagccaggtgtggtggcgcatgcctgtaatcccagctact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     361076 170 +   2037526 ccgggcgcggtggcttctgcctgtaatcctagcactctgggaggcagaggcgggtggatcacctgagatcgggagtttgag----------------------------accagcctgaccaacaa------------ggaga-a--------acccc-atct---------------------------------------ctacta-acaat--------acaaaattagccaggtgtggtggcgcatgcctgtaat-ccagctact
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024440 171 + 122973662 ccgggcgcagtggcttctgcctgtaatcctagcactctgggaggcagaagcgggtggatcacctgagatcgggagtttgag----------------------------accagcctgaccaacaa------------ggaga-a--------acccc-gtct---------------------------------------ctacta-acaat--------acaaaattagccaggtgtggtggcgcatgcctgtaatcccagcaact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30914208 163 + 172585720 tcaggcgcagtggcttccgcctgtaatcccagcactctgagaggcagaggcaggtggatcacctgagatcggaagtttgag----------------------------accagcctgaccaacat------------ggaga-a--------acccc-ttct---------------------------------------ctactataaaat--------accaaatta---------tgtggcacatacctgtaatcccagctact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30203751 172 - 170955103 tcaggcgcagtggcttccgcctgtaatcccagcactctgagaggcagaggcaggtggatcacctgagatcggaagtttgag----------------------------accagcctgaccaacat------------ggaga-a--------acccc-ttct---------------------------------------ctactataaaat--------accaaattagctgggtatggtggcacatacctgtaatcccagctact
i macFas5.chr4             C 0 M 751
s macNem1.NW_012012100v1     452657 172 +   1495729 tcaggcgcagtggcttccgcctgtaatcccagcactctgagaggcagaggcaggtggatcacctgagatcggaagtttgag----------------------------accagcctgaccaacat------------ggaga-a--------acccc-ttct---------------------------------------ctactataaaat--------accaaattagctgggtatggtggcacatacctgtaatcccagctact
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     556267 170 -    863181 tcaggcgcagtggcttctgcctgtaatcccagcactctgagaggcagaggcaggtggatcacctgagatcggaagtttgag----------------------------accagcctgaccaacat------------ggaga-a--------acccc-ttct---------------------------------------ctactataaaat--------accaaattagctgggtacggt-gcacata-ctgtaatcccagctact
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29702937 172 -  71996105 tcaagcgcagtggcttctgcctgtaatcccagcactctgagaggcagaggcaggtggatcacctgagatcggaagtttgag----------------------------accagcctgaccaacat------------ggaga-a--------acccc-ttct---------------------------------------ctactataaaat--------accaaattagctgggtacggtggcacatacctgtaatcccagctact
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     352569 172 -   1829203 tcaggtacagtggcttccgcctgtaatcccagcacactgagaggcagaggcaggtggatcacctgagatcagaagtttgag----------------------------accagcctgaccaacat------------ggaga-a--------accct-gtct---------------------------------------ctactataaaat--------accaaattagctgggcacagtggcacatgcctgtaatcccagctact
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30534089 172 + 171630274 cccagtgcggtggctcacatctgtaatcccagcactttgggaggccaaggcaggtggattacctgaggtcgggagtttgag----------------------------accagcttgaccaacac------------agaga-a--------accccactgt---------------------------------------ctacta-aaaat--------acaaaattggccagtcatggtggcacatgcctgtaatctcagctact
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           338414 172 +    515838 cccagtgtggtggctcacacctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcgggagtttgag----------------------------accagcctgaacaacat------------agaga-a--------gctccattgt---------------------------------------ctacta-aaaat--------acaaaattagctgggcatggtggcacatgcctgtaagcccagctact
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     967568 170 -   1771730 cccagtgcggtggctcacacctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcgggagtttgag----------------------------accagcctgaacaacat------------agaga-a--------accc--gtgt---------------------------------------ctacta-aaaat--------acaaaattagccgggcatggtggcacatgcctgtaagcccagctact
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     152367 173 -    486031 cccagcgtggtggctcacacctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggctgggagtttgag----------------------------accagcctgaccaacat------------agagaca--------accccattgt---------------------------------------ctacta-aaaat--------acaaaattagccgggcatggtggcacatgcctgtaatcccagctact
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           397429 266 +  18854210 ccaggtatgggagctcatacctataatcctagcactctgggaggccgaggcaggtggattgcctcagcttacacgtctgaggcaaagtgagtcctcatctctaaaaataACTGGGCTgggcggcacctgtggctcaagggagt-agggtgccggcccc-atatactggaggtggtgggttcaaaaccagacccagccaaaagctgcaa-aaaataaaaataaataaaaatagctgggtgttgtgccaggcaactgaactcccagctact
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               444595 249 + 123392446 I
e mm10.chr17               58140730 552 -  94987271 I
e proCoq1.NW_012149775v1     398898 164 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e manLeu1.NW_012107142v1     439605 725 -    735854 M

a score=342712.000000
s hg38.chr6_GL000254v2_alt  1549160 49 +   4827813 gggcaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgc
s panTro5.chr6             30418244 49 + 175400573 gggcaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652459 49 + 173848474 gggcaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     361246 48 +   2037526 gggcaggctgaggcaggagaatcgcttgaa-ccaggaggcggaggttgc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024611 49 + 122973662 tggcaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30914371 48 + 172585720 tgggaggctgaggcaggagaatggcct-aacccgggaggcggagcttgc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     452829 49 +   1495729 cggcaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     556437 49 -    863181 cggcaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgc
i cerAty1.NW_012002535v1   C 0 I 29
s chlSab2.chr17            29703109 49 -  71996105 cggcaggctgaggcagaagaatcgcttgaacccaggaggcggaggttgc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     352741 49 -   1829203 cggcaggctgaggcaggagaatcgcttgaactcaggaggcggaggttgc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30534261 42 + 171630274 caggaggctgaggcag-------gcttgaatccatgaggtggaggttgc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           338586 42 +    515838 tgggaggctgaggcag-------gcttgaatccatgaggtggaggttgc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     967738 42 -   1771730 cgggaggctgaggcag-------gcttgaatccatgaggtggaggttgc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     152540 42 -    486031 caggaggctgaggcag-------gcttgaatccatgaggtggaggttgc
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           397695 49 +  18854210 tgggaagctgaggcaagagaaccacttgagcccaagagtttgagcttgc
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               444595 249 + 123392446 I
e mm10.chr17               58140730 552 -  94987271 I
e proCoq1.NW_012149775v1     398898 164 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e manLeu1.NW_012107142v1     439605 725 -    735854 M
e macFas5.chr4             30203923 751 - 170955103 M

a score=128380.000000
s hg38.chr6_GL000254v2_alt  1549209 30 +   4827813 agtgagctgagatcacgccaattgcac----tcc
s panTro5.chr6             30418293 30 + 175400573 agtgagctgagatcacgccaattgcac----tcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652508 30 + 173848474 agtgagctgagatcacgccaattgcac----tcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     361294 30 +   2037526 agtgagctgagatcacaccaattgcac----tcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024660 34 + 122973662 agtaagctgagatcacgccaattgcactccatcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30914419 29 + 172585720 agtgagccgagatctcgtc-actgcac----tcc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     452878 30 +   1495729 agtgacctgagattgtgccaactgcac----tgc
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29703158 30 -  71996105 agtgacctgagatcgtgccaactgcac----tgc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     352790 30 -   1829203 agtgacctgagatcgtgccaactgcac----tgc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30534303 29 + 171630274 agtgagccaagattgcacc-actgcac----tcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           338628 26 +    515838 agta---caagactgcacc-attgtac----tgc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     967780 29 -   1771730 agtgagccaagattgcacc-actgcaa----tgc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     152582 29 -    486031 agtgagccaagactgcacc-actgcac----tcc
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           397744 26 +  18854210 tgtgaactatga---cacc-atggcac----tct
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               444595 249 + 123392446 I
e mm10.chr17               58140730 552 -  94987271 I
e proCoq1.NW_012149775v1     398898 164 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e manLeu1.NW_012107142v1     439605 725 -    735854 M
e cerAty1.NW_012002535v1     556486 29 -    863181 I
e macFas5.chr4             30203923 751 - 170955103 M

a score=104049.000000
s hg38.chr6_GL000254v2_alt  1549239 17 +   4827813 agcct--gggcaacaagag
s panTro5.chr6             30418323 17 + 175400573 agcct--gggcaacaagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652538 17 + 173848474 agcct--gggcaacaagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     361324 17 +   2037526 agcct--gggcaacaagag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024694 17 + 122973662 agcct--gggcaacaagag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30914448 14 + 172585720 agcct--ggatgacag---
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     452908 17 +   1495729 agcct--gggcaacaagag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     556515 17 -    863181 agctt--gggcaacacaga
i cerAty1.NW_012002535v1   I 29 I 1
s chlSab2.chr17            29703188 17 -  71996105 agcct--gggcaacaagag
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     352820 17 -   1829203 agcct--gggcaacaaaag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30534332 17 + 171630274 agctt--gggcattaagag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           338654 17 +    515838 agctt--gggcaataaggg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     967809 17 -   1771730 agctt--gggcaataagag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     152611 17 -    486031 agctt--gggcaataagag
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           397770 16 +  18854210 --tctgagggtgacaaag-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               444595 249 + 123392446 I
e mm10.chr17               58140730 552 -  94987271 I
e proCoq1.NW_012149775v1     398898 164 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e manLeu1.NW_012107142v1     439605 725 -    735854 M
e macFas5.chr4             30203923 751 - 170955103 M

a score=210671.000000
s hg38.chr6_GL000254v2_alt  1549256 26 +   4827813 caaaactccatct-caaaaaataaaa-a
s panTro5.chr6             30418340 26 + 175400573 caaaactccatct-caaaaaataaaa-a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652555 26 + 173848474 caaaactccatct-caaaaaataaaa-a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     361341 26 +   2037526 caaaactccatct-caaaaaataaaa-a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024711 26 + 122973662 gaaaactccatct-caaaaaataaaa-a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30914462 26 + 172585720 cgagactccgtct-caaaaaaaaaaa-a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30204675 26 - 170955103 CGAGACTCTGTCT-Caaaaaaaaaaa-a
i macFas5.chr4             M 751 C 0
s macNem1.NW_012012100v1     452925 26 +   1495729 caaaactccatct-caaaaaataaaa-a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     556533 25 -    863181 -caaactccatct-caaaaaataaaa-a
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29703205 26 -  71996105 caaaactccatct-caaaaaataaaa-a
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     352837 26 -   1829203 caaaactccatct-caaaaaataaaa-a
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30534349 22 + 171630274 caaaactctgtct-caaaaaata-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           338671 26 +    515838 caaaactctgtct-caaaaaataaaa-a
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     967826 26 -   1771730 caaaactctgtct-caaaaagtaaaa-a
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     152628 27 -    486031 caaaactctgtct-caaaaaataaaata
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           397786 27 +  18854210 tgagagtctatctccaaaaaataaat-a
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               444595 249 + 123392446 I
e mm10.chr17               58140730 552 -  94987271 I
e proCoq1.NW_012149775v1     398898 164 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e manLeu1.NW_012107142v1     439605 725 -    735854 M

a score=-5128.000000
s hg38.chr6_GL000254v2_alt  1549282  6 +   4827813 tg--------aaaa
s panTro5.chr6             30418366  6 + 175400573 tg--------aaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652581  6 + 173848474 tg--------aaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     361367  6 +   2037526 tg--------aaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024737  6 + 122973662 ta--------aaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30914488  6 + 172585720 aa--------aaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30204701  6 - 170955103 aa--------aaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     452951  6 +   1495729 at--------aaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     556558  6 -    863181 at--------aaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29703231  6 -  71996105 at--------aaaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     352863  6 -   1829203 at--------aaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30534371  4 + 171630274 ----------aaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           338697 10 +    515838 aa----aattaaaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     967852 14 -   1771730 aataataataaaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     152655 10 -    486031 aa----aataaaaa
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           397813  6 +  18854210 aa--------TGAA
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               58141282  6 -  94987271 -------TCCAGC-
i mm10.chr17               I 552 C 0
e micMur3.chr6               444595 249 + 123392446 I
e proCoq1.NW_012149775v1     398898 164 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e manLeu1.NW_012107142v1     439605 725 -    735854 M

a score=107105.000000
s hg38.chr6_GL000254v2_alt  1549288 16 +   4827813 aataaa-CCAGAAGCTA
s panTro5.chr6             30418372 16 + 175400573 aataaa-CCAGAAGCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652587 16 + 173848474 aataaa-CCAGAAGCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     361373 16 +   2037526 aataaa-CCAGAAGCTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024743 16 + 122973662 aataaa-CCAGAAGCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30914494  3 + 172585720 aaa--------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30204707  3 - 170955103 aaa--------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     452957 16 +   1495729 aataaa-CCAGAAGCTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     556564 15 -    863181 aaT-AA-CCAGAAGCTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29703237 16 -  71996105 aataaa-CCAGAAGCTA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     352869 17 -   1829203 aataaaCCCAGAAGCTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30534375 16 + 171630274 aataaa-CCAGAAGCTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           338707 16 +    515838 aataaa-CCAGAAGCTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     967866 16 -   1771730 aaTAAA-CCAGAAGCTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     152665 16 -    486031 aataaa-CCAGAAGCTA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     399062 16 -   1411461 AATAAA-CCAGCAGCTA
i proCoq1.NW_012149775v1   I 164 C 0
s otoGar3.GL873550           397821 16 +  18854210 aataaa-taataaaata
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               58141288 16 -  94987271 AGTAAT-CCAGAAACTA
i mm10.chr17               C 0 C 0
e micMur3.chr6               444595 249 + 123392446 I
e canFam3.chr35            26396751 3175 +  26524999 I
e manLeu1.NW_012107142v1     439605 725 -    735854 M

a score=113761.000000
s hg38.chr6_GL000254v2_alt  1549304 13 +   4827813 GCTGCAATTCTAT
s panTro5.chr6             30418388 13 + 175400573 GCTGCAATTCTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652603 13 + 173848474 GCTGCAATTCTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     361389 13 +   2037526 GCTGCAATTCTAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024759 13 + 122973662 GCTGCAATTCTAT
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1     452973 13 +   1495729 GCTGCAATTCTAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     556579 13 -    863181 GCTGCAATTCTAT
i cerAty1.NW_012002535v1   C 0 I 318
s chlSab2.chr17            29703253 13 -  71996105 GCTGCAATTCTAT
i chlSab2.chr17            C 0 I 316
s colAng1.NW_012115577v1     352886 13 -   1829203 GCTGCAATTCTAT
i colAng1.NW_012115577v1   C 0 I 385
s calJac3.chr4             30534391 13 + 171630274 GCTGCAATTCTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           338723 13 +    515838 GCTGCAATTCTAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     967882 13 -   1771730 GCTGCAATTCTAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     152681 13 -    486031 GCGGCAATTCTAT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     399078 13 -   1411461 GCTGCACTTCTAC
i proCoq1.NW_012149775v1   C 0 C 0
s mm10.chr17               58141304 13 -  94987271 GCTACAATTCCAC
i mm10.chr17               C 0 C 0
e micMur3.chr6               444595 249 + 123392446 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           397837  0 +  18854210 C
e manLeu1.NW_012107142v1     439605 725 -    735854 M
e macFas5.chr4             30204710  0 - 170955103 C
e rheMac8.chr4             30914497  0 + 172585720 C

a score=9555.000000
s hg38.chr6_GL000254v2_alt  1549317 1 +   4827813 A
s panTro5.chr6             30418401 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652616 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     361402 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024772 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1     452986 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 I 320
s cerAty1.NW_012002535v1     556910 1 -    863181 a
i cerAty1.NW_012002535v1   I 318 C 0
s chlSab2.chr17            29703582 1 -  71996105 a
i chlSab2.chr17            I 316 C 0
s colAng1.NW_012115577v1     353284 1 -   1829203 a
i colAng1.NW_012115577v1   I 385 C 0
s calJac3.chr4             30534404 1 + 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           338736 1 +    515838 A
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     967895 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     152694 1 -    486031 A
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     399091 1 -   1411461 A
i proCoq1.NW_012149775v1   C 0 C 0
s mm10.chr17               58141317 1 -  94987271 A
i mm10.chr17               C 0 C 0
e micMur3.chr6               444595 249 + 123392446 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           397837 0 +  18854210 C
e manLeu1.NW_012107142v1     439605 725 -    735854 M
e macFas5.chr4             30204710 0 - 170955103 C
e rheMac8.chr4             30914497 0 + 172585720 C

a score=565126.000000
s hg38.chr6_GL000254v2_alt  1549318 61 +   4827813 GAACCAGGAAGATGCAACA---AACAAGCCCTGCAATGTCCTGGTACCCTCCTCACAGGCAGAA
s panTro5.chr6             30418402 61 + 175400573 GAACCAGGAAGATGCAACA---AACAAGCCCTGCAATGTCCTGGTACCCTCCTCACAGGCAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652617 61 + 173848474 GAACCAGGAAGATGCAACA---AACAAGCCCTGCAATGTCCTGGTACCCTCCTCACAGGCAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     361403 61 +   2037526 GAACCAGGAAGATGCAACA---AACAAGCCCTGCAATGTCCTGGTACCCTCCTCACAGGCAGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024773 61 + 122973662 GAACCAGGAAGATGCAACA---AACAAGCCCTGCAATGTCCTGGTACCCTCCTCACAGGCAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30914497 61 + 172585720 gaaCCAGGAAGATGCAACA---AACAAGCCCTGCAATGTCCTGGTACCCTCCCCACAGGCAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30204710 61 - 170955103 gaaCCAGGAAGATGCAACA---AACAAGCCCTGCAGTGTCCTGGTACCCTCCCCACAGGCAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     453307 56 +   1495729 gaaCCAGGAAGATGCAACA---AACAA-----GCAATGTCCTGGTACCCTTCCCATAGGCAGAA
i macNem1.NW_012012100v1   I 320 C 0
s cerAty1.NW_012002535v1     556911 61 -    863181 gaaCCAGGAAGATGCACCA---AACAAGACCTGCAATGTCCTGGTACCCTTCCCATAGGCAGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29703583 61 -  71996105 gaaCCAGGAAGATGTAACA---AACAAGCCCTGCAATGTCCTGGTACCCTTCCCATAGGCAGAA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     353285 61 -   1829203 gaaCCAGGAAGATGCAACA---AACAAGCCCTGCAATGTCCTGGTACCCTCCTCATAGGCAGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30534405 64 + 171630274 GAACCAGGAAGATGCAGCAAACAACAAGCCCTGCAATGTCCTGGTACCCTTGTCACAGACAGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           338737 61 +    515838 GAACCAGGAAGATGCCACAAACAACAAGCCCTGCAATGTCCTGGTACCC---TCACAGACAGAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     967896 61 -   1771730 GAACCAGGAAGATGCAACAAACAACAAGCCCTGCAATGTCCTGGTACCC---TGAAAGACAGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     152695 61 -    486031 GAACCAGGAAGATGAAACA---AACAAGCCCTGCAATGTCCTGATACCCTTGTCACAGACAGAA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     399092 64 -   1411461 GAACCAGGAAGATGCTGCAAAGGACAAGCCCTGCGATACCCTGGTGCCCTCCTTGCAGACAGTA
i proCoq1.NW_012149775v1   C 0 C 0
s mm10.chr17               58141318 36 -  94987271 GGAGCAGGGAGG-----------------CCTGCAGTATCCTGACACTT-----------AGAA
i mm10.chr17               C 0 C 0
e micMur3.chr6               444595 249 + 123392446 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           397837  0 +  18854210 C
e manLeu1.NW_012107142v1     439605 725 -    735854 M

a score=710099.000000
s hg38.chr6_GL000254v2_alt  1549379 72 +   4827813 CTGCAGACACTCCCTACCTTTCTCTAAGAGGTTCCCTT-TTCCCTGAAATCCACCCCTCCCCTATAAGTCTCT
s panTro5.chr6             30418463 72 + 175400573 CTGCAGACACTCCCTACCTTTCTCTAAGAGGTTCCCTT-TTCCCTGAAATCCACCCCTCCCCTACAAGTCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652678 72 + 173848474 CTGCAGACACTCCCTACCTTTCTCTAAGAGGTTCCCTT-TTCCCTGAAATCCACCCCTCCCCTATAAGTCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     361464 72 +   2037526 CTGCAGACACTCCCTACCTTTCTCTAAGAGGTTCCCTT-TTCCCTGAAATCCACCCCTCCCCTATAAGTCTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024834 72 + 122973662 CTGGAGACACTCCCTACCTTTCTCTAAGAGGTTCCCAT-TTCCCTGAAATCCACCCCTTCCCTATAAGTCTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30914558 72 + 172585720 CTAGAGACACTCCGTACCTTTCTCTAAGAGGTTCCCCT-TTCCCTGAAATCCATCCCTCCCCGATAAGTCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30204771 72 - 170955103 CTAGAGACACTCCGTACCTTTCTCTAAGAGGTTCCCCT-TTCCCTGAAATCCACCCCTCCCCGATAAGTCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     453363 72 +   1495729 CTAGAGACACTCCGTACCTTTCTCTAAGAGGTTCCCCT-TTCCCTGAAATCCACCCCTCCCCGATAAATCTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     556972 72 -    863181 CTAGAGACACTCCGTACCTTTCTCTAAGAGGTTCCCCT-TTCCCTGAAATCCACCCCTCCCCGATGAGACTCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29703644 71 -  71996105 CTAGAGACACTCCGTACCTTTCTCTAAGAAGTTCCCCT-TT-CCTGAAATCCACCCCTCCCCGGTAAGTCTCT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     353346 72 -   1829203 CTAGAGACACTCCGTACCTTTCTCTAAGAGGTTCCCCT-TTCCCCGAAATCTACCCCTCCCTGGTAAGTCTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30534469 71 + 171630274 CTGGAGATACCCCCTACCTTTATCTAAGCGGTTCCCCT-TTCCTTGAAATCCACCCCTCCCCTAT-AGTCTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           338798 63 +    515838 CTGGAGACACCCCCCACCTTTATCTAAGCTGTTCCCC----------AATCCAACCCTCCCCTATAAGTCTCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     967957 72 -   1771730 CTGGAGACACCCCCTATCTTTATCTAAGCTTTTCCCAT-TTCCTTGAAATCCACCCCTCCCCTATATGTCTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     152756 72 -    486031 CTGGAGACACCCCCTACCTTTATCTAAACTGTTCCCCT-TTCCTTGAAATCCACCCCTCCCCTGTACATCTCT
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               444844 71 + 123392446 CTGCAGACACTTCCTGCCTTTCTCTAAGAGG--CTCCTCCTCCCCAAAATCCACCCCTCCTCTGTAAGTCTCC
i micMur3.chr6             I 249 C 0
s proCoq1.NW_012149775v1     399156 73 -   1411461 CTGGAGACACTTCCTACCTTCCTCTAAGAGGTTCCCCTCTCCCCCAAAACCCACCCCTCCCCTGTAAGTCTCT
i proCoq1.NW_012149775v1   C 0 C 0
s mm10.chr17               58141354 69 -  94987271 TTGGGGATACTTTCTATTCTTCACTGAG---TCTCCCT-TTATCTCCAAACCACCTCTCCCTTAGAAAGCTGA
i mm10.chr17               C 0 C 0
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           397837  0 +  18854210 C
e manLeu1.NW_012107142v1     439605 725 -    735854 M

a score=1654323.000000
s hg38.chr6_GL000254v2_alt  1549451 132 +   4827813 GGATCTCATAAATACCTAATCTGCATATGTCAACAGACT------GGTCAAGGTGACACCATGTAATTTCAAG-----ATGTGGATGC-ATGCACGATTATTGGCTCCAAGAATAATCACTATGAGCTACAAAAACTAGCTGAA
s panTro5.chr6             30418535 132 + 175400573 GGATCTCATAAATACCTAATCTGCATATGTCAACAGACT------GGTCAAGGTGACACCATGTAATTTCAAG-----ATGTGGATGC-ATGCACGATTATTGGCTCCAAGAATAATCACTATGAGCTGCAAAAACTAGCTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652750 132 + 173848474 GGATCTCATAAATACCTAATCTGCATATGTCAACAGACT------GGTCAAGGTGACACCATGTAATTTCAAG-----ATGTGGATGC-ATGCACGATTATTGGCTCCAAGAATAATCACTATGAGCTGCAAAAACTAGCTGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     361536 132 +   2037526 GGATCTCATAAATACCTAATCTGCATATGTCAACAGACT------GGTCAAGGTGACACCATGTAATTTCAAG-----ATGTGGATGC-ATGCACGATTATTGGCTCCAAGAATAATCACTATGAGCTGCAAAAACTAGCTGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75024906 132 + 122973662 GGATCTCATAAATACCTAATCTGCATATGTCAACAGACT------GGCCAAGGTGACACCACATAATTTCAAG-----ATGTGGATGC-ATGCACGATTATTGGCTCCAAGAATAATCACTATAAGCAGCAAAAACTAACTGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30914630 131 + 172585720 GGATCTCATAAATACCTAATCTGCATATGTCAACAGACT------GGCCAAGGTGACGCCACATAA-TTCAAG-----ATGTGGATGT-ATGCACGATTACTGGCTCCAAGAATAATCATTATGAGCCGCAAAAACTAGCTGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30204843 132 - 170955103 GGATCTCATAAATACCTAATCTGCATATGTCAACAGACT------GGCCAAGGTGACGCCACATAATTTCAAG-----ATGTGGATGC-ATGCACGATTATTGGCTCCAAGAATAATCATTATGAGCCGCAAAAACTAGCTGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     453435 132 +   1495729 GGATCTCATAAATACCTAATCTGCATATGTCAACAGACT------GGCCAAGGTGACGCCACATAATTTCAAG-----ATGTGGATGC-ATGCACGATTATTGGCTCCAAGAATAATAATTATGAGCTGCAAAAACTAGCTGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     557044 132 -    863181 GGATCTCATAAATACCTAATCTGCATATGTCAACAGACT------GGCCAAGGTGACGCCACATAATTTCAAG-----ATGTGGATGC-ATGCACGATTATTGGCTCCAAGAATAATCATTATGAGCTGCAAAAACTAGCTGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29703715 132 -  71996105 AGATCTCATGAATACCTAATCTGCATATGTCAACAGACT------GGCCAAGGTGATGCCACATAATTTCAAG-----ATGTGGATGC-ATGCACGATTACTGGCTCCAAGAATAATCATTATGAGCTGCAAAAACTAGCTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     440330 132 -    735854 GGATCTCATAAATACCTAATCTGCATATGTCAACAGACT------GGCCAAGGTGACGCCACATAATTTCAAG-----ATGTGGATGC-ATGCACGATTATTGGCTCCAAGAATAATCATTATGAGCTGCAAAAACTAGCTGAG
i manLeu1.NW_012107142v1   M 725 C 0
s colAng1.NW_012115577v1     353418 132 -   1829203 GGATCTCATAAATACCTAATCTGCATATGTCAACAGACT------GGCCAAGGTGACACTACATAATTTCAAG-----ATGTGGATGC-ATGCAAGATTATTGGCTCCAAGAATAATCATTATGAGCCACAAAAACTAGCTGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30534540 129 + 171630274 GGATCTCATAAATACCTAATCTGCACATGTCA--AGACT------AGGCAAGGTGATGCCTCATAATTTCAAG-----ATGTGGATAC-ATGCACGATTATTGGCTCCAAG-ATAATCATGACGAGCTGTAAAAACTAACTGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           338861 131 +    515838 GGATCTCATAAATACCTAATCTGCACATGTCAACAGACG------AGGCAAGGTGACGCCTCGTAATTTCAAG-----ATATGGATGC-ATGCATGATTACTGGCTCCAAG-ATAATCACTATGAGCTGTAAAAACTAACTGAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     968029 131 -   1771730 GGATCTCATAAATACCTAATCTGCACATGTCAACAGACT------AGGCAAGGTGACGCCTCGTAATTTCAAG-----ATATGGATGC-ATGCACGATTACTGGCTCCAAG-ATAATCACTATGAGCTGTAAAAACTAACTGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     152828 131 -    486031 GGATCTCATAAATACCTAATCTGCACATGTCAACAGACT------AAGCAAGGTGATGCCTCATAATTTCAAG-----ATGTGGATGC-ATGCACAATTACTGGCTCCAAG-ATAATCACTATGAGCTGTAAAAACTAACTGAG
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               444915 131 + 123392446 AGATCTCA-AAAGACCTAGTCTGCATATGTCAACAGACT------GGCCAAGGCGACACCATGTAATTTCAGG-----ATGTGGACAC-GTGCACAATCCTTTGCTCCGAGAATAATCACTGTGAGCTGCAAAAACTAGCTGAA
i micMur3.chr6             C 0 I 303
s proCoq1.NW_012149775v1     399229 132 -   1411461 GGATCTCATAAAGACCTAATCTGCATATGTCAACAGACT------GGCCAAGGTGACACCATGTAATTTCAGG-----ATGTGGACAC-GTGCACAGTTCTTCGCTCCGAGAATCATCACTGTGAGCTGCGAAAACTAGCTGAA
i proCoq1.NW_012149775v1   C 0 I 213
s mm10.chr17               58141423 130 -  94987271 GGCTCTCATAAACACCTAACCTA-------CAACAAACCAGTTGGGGGCAGGGTGACAT--TGTCATTTCTGGCAACACAGTGGATCCTGGGCGAGATTCTTGGCTGTGAG---ATTCACTGTTAGCTGCAAATGCT--CTGAA
i mm10.chr17               C 0 C 0
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           397837   0 +  18854210 C

a score=359504.000000
s hg38.chr6_GL000254v2_alt  1549583 37 +   4827813 Agccgggcacgggggcttgtgcctgtaattccagcac
s panTro5.chr6             30418667 37 + 175400573 Agccgggcacaggggcttgtgcctgtaattccagcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652882 37 + 173848474 Agccgggcacaggggcttgtgcctgtaattccagcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     361668 37 +   2037526 Agccaggcacgggggcttgtgcctgtaattccagcac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75025038 37 + 122973662 Agccgggcatgggggcttgtgcctgtaattccagcac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30914761 37 + 172585720 Agccgagcatggggacttgcgcctgtaattccagcac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30204975 37 - 170955103 Agccgagcatggggacttgcgcctgtaattccagcac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     453567 37 +   1495729 AAACGAGCATGTGGACTTGGgcctgtaattccagcac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     557176 37 -    863181 Agccgagcatggggacttgggcctgtaattccagcac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29703847 37 -  71996105 Agccaagcatggggacttgggcctataattccagcac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     440462 37 -    735854 Agccgagcatggggacttgggcctgtaattccagcac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     353550 37 -   1829203 Agccgagcatggggacttgtgcctgtaattccagcac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30534669 37 + 171630274 Agccgggcacaggggcttgtgcctgtaattccagcac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           338992 37 +    515838 ggccgggcacggggacttgtgcctgtaattcctgcac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     968160 37 -   1771730 ggccgggcacgggggcttgtgcctataattccagcac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     152959 37 -    486031 ggctgggcaccggggcttgtgcctgtaattccagcac
i aotNan1.NW_018496901v1   C 0 C 0
s mm10.chr17               58141553 37 -  94987271 ATGTTGTCGTGAAGGTCTACACCTCTGAGGCAGACAC
i mm10.chr17               C 0 I 161
e micMur3.chr6               445046 303 + 123392446 I
e proCoq1.NW_012149775v1     399361 213 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           397837  0 +  18854210 C

a score=2341203.000000
s hg38.chr6_GL000254v2_alt  1549620 241 +   4827813 tgtgggaggctaaggcaggaggactgcctgagcccaggagtttgagaccagcctgggtaatatagtgagacattgtctccaaaaaaagaaattagctgaattagc---tgggtgcgatggcacatgcctatagttccagctacttaggaagttgaggcaggaggatctcccgagcccaagaagttgaggctgcagacagccatgactgcgccactgcactccagcctgggtgaAACTCTGGCCT
s panTro5.chr6             30418704 241 + 175400573 tgtgggaggctaaggcaggaggactgcctgagcccaggagtttgagaccagcctgggtaacatagtgagacattgtctccaaaaaaagaaattagctgaattagc---tgggtgcgatggcacatgcctatagttccagctacttaggaagttgaggcaggaggatctcctgaggccgggaagttgaggctgcagacagccatgactgcgccactgcactccagcctgggtgaAACTCTGGCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30652919 241 + 173848474 tgtgggaggctaaggcaggaggactgcctgagcccaggagtttgagaccagcctggggaacatagtgagacattgtctccaaaaaaagaaattagctgaattagc---tgggtgcgatggcacatgcctatagttccagctacttaggaagttgaggcaggaggatctcctgaggccgggaagttgaggctgcagacagccatgactgcgccactgcactccagcctgggtgaAACTCTGGCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     361705 240 +   2037526 tgtgggaggctaaggcaggaggactgcctgagcccaggagtttgagaccagcctgggtaacatagtgagacattgtctcc-aaaaaagaaattagctgaattagc---tgggtgcgatggcgcatgcctatagttccagctacttaggaagttgaggcaggaggatctcctgagcccgggaagttgaggctgcagatagccatgactgcgccactgcactccagcctgggtgaAACTCTGGCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75025075 241 + 122973662 tgtgggaggctaaggcaggaggactgcctgagcccaggagtttgagaccagcctgggtaacatagtgagacgttgtctccaaaaaacgaaattagctgaattagc---tgggcgtgatggcgcatgcctatagttccagctacttaggaaattgaggcaggaggatctcctgagcctgggaagttgaggctgcagacagccatgactgcgccactgcactccagcctgggcgaAACTCTGGCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30914798 241 + 172585720 tgtgggaggctaaggcaggaggattgcctcagcccaggagtttgagaccagcctgggtaacacagtgagatgctgtctctaaaaaaagaaattagctgaattaac---tgggcatgatggcacatgactatagttccagctacttaggaaattgaggcaggaggatctcctgagcctgggaagttgaggctgcagacagccatgattgcgccactgtactccagccggggtgaAACTCCGGCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30205012 241 - 170955103 tgtgggaggctaaggcgggaggattgcctcagcccaggagtttgagaccagcctgggtaacacagtgagatgctgtctctaaaaaaagaaattagctgaattaac---tgggcatgatggcacatgactatagttccagctacttaggaaattgaggcaggaggatctcctgagcctgggaagttgaggctgcagacagccatgattgcgccactgtactccagccggggtgaAACTCCGGCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     453604 241 +   1495729 tgtgggaggctaaggcgggaggattgcctcagcccaggagtttgagaccagcctgggtaacacagtgagacgctgtctctaaaaaaagaaattagctgaattaac---tgggcatgatggcgcatgactatagttgcagctacttaggaagttgaggcaggaggatctcctgagcctgggaagttgaggctgcagacagccatgactgcgccactgcactccaaccagggtgaAACTCTGGCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     557213 241 -    863181 tgtgggagactaaggcgggaggattgcctcagcccaggagtttgagaccagcctgggtaacacagtgagacgctgtctctgaaaaaagaaattagctgaattaac---tgggcatgatggcgcacgactatagttgcagctacttaggaagttgaggcaggaggatctcctgagcctgggaagttgaggctgcagacagccatgactgcgccactgcactccaaccagggtgaAACTCTGGCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29703884 241 -  71996105 tgtgggaggctaaggcgggaggactgcctcagcccaggagtttgagaccagcctgggtaacacagtgagacgctgtctctaaaaaaagaaattagctgaattaac---tgggcatgatggcgcatgactgtagttgcagctacttaggaagttgaggcaggaggatctcctgagcctgggaaatagaggctgcagacagccatgactgcgccactgcactccaaccagggtgaAACTCTGGCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     440499 241 -    735854 tgtgggaggctaaggcgggaggattgcctcagcccaggagtttgagaccagcctgggtaacacagtgagatgctgtctctaaaaaaagaaattagctaaattaac---tgggcatgatggcacatgactatagttgcagctacttaggaagttgaggcaggaggatctcctgagcctgggaagttgaggctgcagacagccatgattgcgccactgtactccagccggggtgaAACTCTGGCCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     353587 238 -   1829203 tgtgggaggctaaggcgggaggattgcctcagcccaggagtttgagaccagcctgggtaacacagtgagacgctgtctctaaaaaaagaaattagctgaattaac---tgggcatgatggcgcatgcctatagttccagctacttaggaagttgaggcaggaggatctcccgagccggggaagttgaggctgcagacagccatgactgcgccactgcactcca---AGGGTGAAACTCTGGCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30534706 244 + 171630274 tttgggaggctaaggcaggacgattgcctgagctcaggagtttgaaaccagcctgagtaacatagtgagaccttgtctctaaaaaaagaaattagctgaattagctaattagcggaatgatgcatgcctgtagttccagctacctagtaagctgagacaggtagatctcttgagcctgggaagttgaggctgcagagagccatgactatgccactgcactccagcctgggTAAAACTTTGGCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           339029 239 +    515838 tttgggaggctaaggcaggaggattgcctgagctcaggagtttgaaaccagcctgagtaacatagtgagaccttgtctctaaaaaaagaaatttgctgacttagc----tggtgtgatggtgcatgcctgtagttccagctacctagtaagctgaggcaggaacatctcttgagcctgggaagttgaggctgcagagagccatgactgcaccactgcactccag-ctgggTAAAACTTTGGCCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     968197 241 -   1771730 tttgggaggctaaggcaggaggattgcctgagcccaggagtttgaaaccagcctaagtaacatagtgagaccttgtctctaaaaaaagaaattagctgaattagc---tgggagggatggtgcatgcctgtagttccagctacctagtaagctgaggcaggaagatctcttgagcctgggaagttgaggctgcagagagccatgactgcgccactgcactccagcctgggTAAAACTTTGGCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     152996 234 -    486031 tttgggaggctaaggcaggaagattgcctgagtccaggagtttgaaaccagcctgagtaacatagtgagactttgtctctaaaaaaagaaattagctgaattagc---tgggcaggatggtgcatgcctgtagtt-------cctagtaagctgaggcaggaagatctcttgagcctgggaagttgaggctgcagagagccatgactgcgccactgcactctagcctgggTAAAACTTTGGCCT
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               445046 303 + 123392446 I
e mm10.chr17               58141590 161 -  94987271 I
e proCoq1.NW_012149775v1     399361 213 -   1411461 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           397837   0 +  18854210 C

a score=202677.000000
s hg38.chr6_GL000254v2_alt  1549861 21 +   4827813 G----------CCTCCGGCTCCTAGATGCCA
s panTro5.chr6             30418945 21 + 175400573 G----------CCTCCGGCTCCTAGATGCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30653160 21 + 173848474 G----------CCTCCGGCTCCTAGATGCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     361945 21 +   2037526 G----------CCTCCGGCTCCTAGATGCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75025316 21 + 122973662 G----------CCTCCGGCTCCTAGATGCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915039 21 + 172585720 G----------CCTCTGGCTCCTAGATGCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30205253 21 - 170955103 G----------CCTCTGGCTCCTAGATGCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     453845 21 +   1495729 G----------CCTCTGGCTCCTAGATGCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     557454 21 -    863181 G----------CCTCTGGCTCCTAGATGCCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29704125 13 -  71996105 G----------CCTCTGGCTCCT--------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     440740 21 -    735854 G----------CCTCTGGCTCCTAGATGCCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     353825 21 -   1829203 G----------CCTCTGGCTCCCAGATGCCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30534950 31 + 171630274 GCCTCCTGCTCCCTCCGGCTCCTGGATGCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           339268 31 +    515838 GCCTCCTGCTGCCTCTGGCTCCTGGATGCCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     968438 31 -   1771730 GCCTCCTGCTGCCTCTGGCTCCTGGATGCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     153230 31 -    486031 GCCTCCTGCTGCCTCCGGCTCCTGGATGCCA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     399574 21 -   1411461 G----------CCTCAGGCTCCTGGATGCCA
i proCoq1.NW_012149775v1   I 213 C 0
e micMur3.chr6               445046 303 + 123392446 I
e mm10.chr17               58141590 161 -  94987271 I
e canFam3.chr35            26396751 3175 +  26524999 I
e otoGar3.GL873550           397837  0 +  18854210 C

a score=38704.000000
s hg38.chr6_GL000254v2_alt  1549882 3 +   4827813 CCC
s panTro5.chr6             30418966 3 + 175400573 CCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30653181 3 + 173848474 CCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     361966 3 +   2037526 CCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75025337 3 + 122973662 CCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915060 3 + 172585720 CCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30205274 3 - 170955103 CCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     453866 3 +   1495729 CCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     557475 3 -    863181 CCC
i cerAty1.NW_012002535v1   C 0 C 0
s manLeu1.NW_012107142v1     440761 3 -    735854 CCC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     353846 3 -   1829203 CCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30534981 3 + 171630274 CCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           339299 3 +    515838 CCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     968469 3 -   1771730 CCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     153261 3 -    486031 CCC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     399595 3 -   1411461 CCC
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr35            26399926 3 +  26524999 CCC
i canFam3.chr35            I 3175 C 0
e micMur3.chr6               445046 303 + 123392446 I
e mm10.chr17               58141590 161 -  94987271 I
e otoGar3.GL873550           397837 0 +  18854210 C
e chlSab2.chr17            29704138 0 -  71996105 C

a score=733759.000000
s hg38.chr6_GL000254v2_alt  1549885 62 +   4827813 AGAGAGGTGCCCTGGTAGACAGTGAAT-CCCAAATGTGGACTCTGGGGCCCAAGAAAGT----AAAT
s panTro5.chr6             30418969 62 + 175400573 AGAGAGGTGCCCTGGTAGACACTGAAT-CCCAAATGTGGACTCTGGGGCCCAAGAAAGT----AAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30653184 62 + 173848474 AGAGAGGTGCCCTGGTAGACACTGAAT-CCCAAATGTGGACTCTGGGGCCCAAGAAAGT----AAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     361969 62 +   2037526 AGAGAGGTGCCCTGGTAGACACTGAAT-CCCAAATGTGGACTCTGGGGCCCAAGAAAGT----AAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75025340 62 + 122973662 AGAGAGGTGCCCTGGTAGACACTGAAT-CCCAGATGTGGACTCTGGAGCCCGAGAAAGT----AAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915063 62 + 172585720 AGAGAGGTGCCCTGGTAGACACTGAAT-CCCAGATGTGGACTCTGGGGTCCAAGAAAGT----GAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30205277 62 - 170955103 AGAGAGGTGCCCTGGTAGACACTGAAT-CCCAGATGTGGACTCTGGGGTCCAAGAAAGT----GAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     453869 62 +   1495729 AGAGAGGTGCCCTGGTAGACACTGAAT-CCCAGATGTGGACTCTGGGGTCCAAGAAAGT----GAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     557478 62 -    863181 AGAGAGGTGCCCTGGTAGACACTGAAT-CCCAGATGTGGACTCTGGGGTCCAAGAAAGT----GAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29704138 62 -  71996105 AGAGAGGTGCCCTGGTAGACACTGAAT-CCCAGATGTGGACTCTGGGGTCCAAGAAAGT----GAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     440764 62 -    735854 AGAGAGGTGCCCTGGTAGACACTGAAT-CCCAGATGTGGACTCTGGGGTCCAAGAAAGT----GAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     353849 62 -   1829203 AAAGAGGTGCCCTGGTAGACACTGAAT-CCCAGATGTGGACTCTGGGGTCCAAGAAAGT----AAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30534984 62 + 171630274 AGAGAGGTGCCCTGGTAGACACTGAAT-CCCAGATGTGGACTCTGGGGCCCAGGAAAGT----GAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           339302 60 +    515838 --AGAGGTGCCCTGGTAGACAATGAAT-CCCAGATGTGGACTCTGGGGCCCAGGAAAGT----GAAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     968472 61 -   1771730 AGAGAGGTGCCCTGGTAGACACTGAAT-CCCAGATGTGGACTCT-GGGCCCAGGAAAGT----GAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     153264 62 -    486031 AGAGAGGTGCCCTGGTGGACACTGAAA-CACAGATGTGGACTCTGGGGCCCAGGAAAGT----GAAT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     399598 62 -   1411461 ACAGAAGTGCTGTGgaagacactgaag-cccagatgtggaccccaggacccagtgaagc----cagt
i proCoq1.NW_012149775v1   C 0 C 0
s mm10.chr17               58141751 56 -  94987271 AGAGAGATATTCTAGGAGTCAATGAATCCCCAGTTTTGGACTCTAACACCCAGAGA-----------
i mm10.chr17               I 161 C 0
s canFam3.chr35            26399929 64 +  26524999 AGAGAGGGGACCCAGGGCACACGGGGT-AC--AGCAGGGACTCCATGGCCCAGAGAGGTGCCAGCAT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               445046 303 + 123392446 I
e otoGar3.GL873550           397837  0 +  18854210 C

a score=1354010.000000
s hg38.chr6_GL000254v2_alt  1549947 104 +   4827813 GGAGAGGCCTGGGTTTTCATCCTGGCCTCCAGGGTACCAGTTCAGGCCTCTCTTGAGTATCCCAAGCTGCTTCT--CAAGCATATGTCTGGACCTCCAAACAAGAG
s panTro5.chr6             30419031 104 + 175400573 GGAGAGGCCTGGGTTTTCATCCTGGCCTCCAGGGTACCAGTTCAGGCCTCTCTTGAGTATCCCAAGCTGCTTCT--CAAGCATATGTCTGGACCTCCAAACAAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30653246 104 + 173848474 GGAGAGGCCTGGGTTTTCATCCTGGCCTCCAGGGTACCAGTTCAGGCCTCTCTTGAGTATCCCAAGCTGCTTCT--CAAGCATATGTCTGGACCTCCAAACAAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362031 104 +   2037526 GGAGAGGCCTGGGTTTTCATCCTGGCCTCCAGGGTACCAGTTCAGGCCTCTCTTGAGTATCCCAAGCTGCTTCT--CAAGCATATGTCTGGACCTCCAAACAAGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75025402 104 + 122973662 GGAGAGGCCTGGGTTTTCATCCTGGCCTCCAGGGTACCAGTTCAGGACTCTCTTGAGTATCCCAAGCTGCTTCT--CAAGCATATGTCTGGACCTCCAAACAAGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915125 104 + 172585720 AGAGAGACCTGGGTTTGTACCCTGGCCTCCAGGGTACCAGTTCAGGACTCTCTTGAGTATCCCAAGCCACTTCT--CAAGCATATGTCCGGACCTCCAAACAAGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30205339 104 - 170955103 AGAGAGGCCTGGGTTTGTACCCTGGCCTCCAGGGTACCAGTTCAGGACTCTCTTGAGTATCCCAAGCCACTTCT--CAAGCATATGTCCGGACCTCCAAACAAGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     453931 104 +   1495729 AGAGAGGCCTGGGTTTGTACCCTGGCCTCCAGGGTACCAGTTCAGGACTCTCTTGAGTATCCCAAGCCACTTCT--CAAGCATATGTCCGGACCTCCAAACAAGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     557540 104 -    863181 AGAGAGGCCTGGGTTTGTACCCTGGCCTCCAGGGTACCAGTTCAGGACTCTCTTGAGTATGCCAAGCCACTTCT--CAAGCATATGTCCGGACCTCCAAACAAGAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29704200 104 -  71996105 AGAGAGGCCTGGGTTTGTACCCTGGCCTCCAAGGTACCAGTTCAGGACTCTCTTGAGTATCCCAAGCCACTTCT--CAAGCATATGTTGGGACCTCCAAACAAGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     440826 104 -    735854 AGAGAGGCCTGGGTTTGTACCCTGGCCTCCAGGGTACCAGTTCAGGACTCTCTTGAGTATCCCAAGCCACTTCT--CAAGCATATGTCCGGACCTCCAAACAAGAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     353911 104 -   1829203 AGAGAGGCCTGGGTTTGTACCCTGGCCTCCAGGGTACCAGTTCAGGACTCTCTTGAGTATCCCAAGCCACTTCT--CAAGCGTATGTCTGGACCTCCAAACAAGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535046 104 + 171630274 GGAAAGGCCTGGGTTTGCACCATGGCCTCCAGCATACCAGTTCAGGCCTCTCTTGAGCATCTCAAGCTGCTTCT--CAAGCGTATGTCTGGACCTCCAAACAAGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           339362 104 +    515838 GGAAAGGTCTGGGTTTGCACCATGGCCTCCAGCATACCAGTTCAGGCCTCTCTTGAGCATCTCAAGCTGCTTCT--CAAGCATATGTCTGGACCTCCAAACAAGAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     968533 104 -   1771730 GGAAAGGTCTGGGTTTGCACCATGGCCTCCAGCATACCAGTTCAGGCCTCTCTTCAGCATCTCAAGCTGCTTCT--CAAGCATATGTCTGGACCTCCAAACAAGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     153326 104 -    486031 GGAAAGGCCTAGGTTTGCACCATGGCCTCCAGCATACCAGTTCAGGCCTCTCTTGAGCATCTCAAGCTGCTTCT--CAAACATATGTCTGGACCTCCAAACAAGAG
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               445349 104 + 123392446 GGAGGGGCCTGGGCTTGCACCCCAGCCCCCAGGCTGCCAGTCCAGGGCTCTCCTGAGTACCCCAGGTGGCTTCT--CAAGCACATCCTGGGGCCTCCAAACAAGAG
i micMur3.chr6             I 303 I 73
s proCoq1.NW_012149775v1     399660 104 -   1411461 ggaggtgcctggacttgtaccctggcctccaggctgccagtccagggctctcttgagtaccccaggctgcttct--cAAGCATATGCTGGGGCCTCCAAACAAGAG
i proCoq1.NW_012149775v1   C 0 C 0
s mm10.chr17               58141807  87 -  94987271 -GACAGG--TAGGTTTACAGCCTGACCC-------------TCAGGGCTCTTTCAGTTACCCCC-GCATCTCCT--CAAACATGCCCCTGGGCCTCCCAACAGGAG
i mm10.chr17               C 0 I 1
s canFam3.chr35            26399993  71 +  26524999 GGAGGGACCTGGAGGTACACTCTGGCCTCCAG---------------------------------ATTGCTTCTCACAACCACATGTGTGG--CTCTGAACAGGAG
i canFam3.chr35            C 0 I 3
e otoGar3.GL873550           397837   0 +  18854210 C

a score=849140.000000
s hg38.chr6_GL000254v2_alt  1550051 76 +   4827813 CAAAGCACCT-------GTAATCCCAAAGCACTTAGCCTAGAGCTCCATTCCCTGTGGGTACTCCATTTAAGGGCTCCT-GGGT
s panTro5.chr6             30419135 76 + 175400573 CAAAGCACCT-------GTAATCCCAAAGCACTTAGCCTAGAGCTCCATTCCCTGTGGGTACTCCATTTAAGGGCTCCT-GGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30653350 76 + 173848474 CAAAGCACCT-------GTAATCCCAAAGCACTTAGCCTAGAGCTCCATTCCCTGTGGGTACTCCATTTAAGGGCTCCT-GGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362135 75 +   2037526 CAAAGCACCT-------GTAATCCCAAAGCACTTAGCCTAGAGCTCCATTCCCTGT-GGTACTCCATTTAAGGGCTCCT-GGGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75025506 77 + 122973662 CAAAGCACCT-------GTAATCCCAAAGCACTTAGCCTAGAGCTCCATTCCCTGTGGGTACTCCATTTAAGGGCTCTTGGGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915229 77 + 172585720 CAAAGCACCT-------GTAATCCCACAGCACTTAGCCTAGAGCTCCACTCCTTGTGGGTACTCCATTTAAGGGCTCTTGGGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30205443 77 - 170955103 CAAAGCACCT-------GTAATCCCACAGCACTTAGCCTAGAGCTCCACTCCTTGTGGGTACTCCATTTAAGGGCTCTTGGGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454035 77 +   1495729 CAAAGCACCT-------GTAATCCCAAAGCACTTAGCCTAGAGCTCCACTCCTTGAGGGTACTCCATTTAAGGGCTCTTGGGGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     557644 77 -    863181 CAAAGCACCT-------GTAATCCCAAAGCACTTAGCCTAGAGCTCCACTCCTTGAGGGTACTCTATTTAAGGGCTCTTGGGGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29704304 77 -  71996105 CAAAGCACCT-------GTAATCCCAAAGCACTTAGCCTAGAGCTCCACTCCTTGAGGGTACTCCATTTAAGGGCTCTTGGGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     440930 77 -    735854 CAAAGCACCT-------GTAATCCCAAAGCACTTAGCCTAGAGCTCCACTCCTTGTGGGTACTCCATTTAAGGGCTCTTGGGGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354015 76 -   1829203 CAAAGCACCT-------GTAATCCCAAAGCACTTAGCCTAGAGCTCTACTCCTTGTGGGTACTCCATTTAAGGGCTC-TGGGGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535150 77 + 171630274 GAAAGCACCT-------GTAATCCCAAAGCACTTAGCCTAGAACTCCATTCCCTGTGGGTACTCCATTTAAGGGCTCTTGGGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           339466 77 +    515838 GAAAGCACCT-------GTAAGCCCAAAGCACTTAGCCTAGAGCTCCATTCCCTGTGGGTACTCCATTTAAGGGCTCTTGAGGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     968637 77 -   1771730 GAAAGCACCT-------GTAATCCCAAAGCACTTAGCCTAGAGCTCCATTCCCTGTGGCTACTCCATTTAATGGCTCTCGGGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     153430 77 -    486031 GAAAGCCCCT-------GTAATCCCAAAGCACTTAGCCTAGACCTCCATTCCCTGTGGGTACTCCATTTAAGGGCTCTTGGGGC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     399764 77 -   1411461 -----CCCCTTCTTCCAGTAATCCCA-AGCACTTAGCCTAGGGCTCCATTCCCTGTGAGAAC-CCATTTAAGAGCTCTTAGGGG
i proCoq1.NW_012149775v1   C 0 I 1
s mm10.chr17               58141895 76 -  94987271 TCATTCTTCT-------GCCATCCCAGAATACTTAGCTTAAGGCTCCATGTCCCATGAGACCACTACCTAATTGTTCATAAGG-
i mm10.chr17               I 1 C 0
s canFam3.chr35            26400067 68 +  26524999 -----CTTCTTTCTC--ATCATCAGAAGGCACCTGGCTGAGCACTCTAGTCCCTGGGGAAAC-CCACTTAATGGGA--------
i canFam3.chr35            I 3 C 0
e micMur3.chr6               445453 73 + 123392446 I
e otoGar3.GL873550           397837  0 +  18854210 C

a score=292436.000000
s hg38.chr6_GL000254v2_alt  1550127 28 +   4827813 CCCAGATTAATCCCCAT------ATTTTAATCTG
s panTro5.chr6             30419211 34 + 175400573 CCCAGATTAATCCCCGTTATCTCAGATTAATCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30653426 29 + 173848474 CCCAGATTAATCTCCGTT-----ATTTTAATCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362210 28 +   2037526 CCCAGATTAATCCCCGT------ATTTTAATCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75025583 28 + 122973662 CCCAGATTAATCCCCGT------ATTTTAATCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915306 28 + 172585720 CCCAGATTCATGCCCGT------ATTTTAATCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30205520 28 - 170955103 CCCAGATTCATGCCCGT------ATTTTAATCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454112 28 +   1495729 CCCAGATTCATGCCCGT------ATTTTAATCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     557721 28 -    863181 CCCAGATTCATGCCCGT------ATTTTAATCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29704381 28 -  71996105 CCCAGATTCATGCCTGT------ATTTTAATCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     441007 28 -    735854 CCCAGATTCATGCCCGT------ATTTTAATCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354091 28 -   1829203 CCCAGATTAATGCCCGT------ATTTTAATCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535227 28 + 171630274 CCCAGATTAAGCCCCAT------ATTTTAATCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           339543 28 +    515838 CCCAGATTAAGCCCCAT------ATTTTAATCTG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     968714 28 -   1771730 CCCAGATTAAGCCCCAT------ATTTTAATCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     153507 28 -    486031 CCCAGATTAAGCCCCAT------ATTTTAATCTG
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               445526 28 + 123392446 CCCAGATTAAGCTCCAT------TTCTTAATCTA
i micMur3.chr6             I 73 C 0
s proCoq1.NW_012149775v1     399842 28 -   1411461 CCCAGATTAAGTTCCAT------TTCTTAATCTG
i proCoq1.NW_012149775v1   I 1 C 0
s mm10.chr17               58141971 28 -  94987271 TGCAGATAAAGGCCTAT------TTCTCAATCTA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26400135 13 +  26524999 AACAGGCCATTCT---------------------
i canFam3.chr35            C 0 C 0
e otoGar3.GL873550           397837  0 +  18854210 C

a score=1194832.000000
s hg38.chr6_GL000254v2_alt  1550155 90 +   4827813 AGATAAGCAAACTCTCCATGGGGTAAACTTCCGTGAGACACCTCTAACAAACCTGGAGAG---------GCCAGAATTCGGGGC-AAAAAGCAAGTGATC
s panTro5.chr6             30419245 90 + 175400573 AGATAAGCAAACTCTCCATGGGGTAAACTTCCGTGAGACACCTCTAACAAACCTGGAGAG---------GCCAGAATTCGGGGC-AAAAAGCAAGTGATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30653455 90 + 173848474 AGATAAGCAAACTCTCCATGGGGTAAACTTCCGTGAGACACCTCTAACAAACCTGGAGAG---------GCCAGAATTCGGGGC-AAAAAGCAAGTGATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362238 90 +   2037526 AGATAAGCAAACTCTCCATGGGGTAAACTTCCATGAGACACCTCTAACAAACCTGGAGAG---------GCCAGAATTCGGGGC-AAAAAGCAAGTGATC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75025611 90 + 122973662 AGATAAGCAAAGTCTCCATGGGGTAAACTGCCATGAGACACCTCTAACAAACCTGGAGAG---------GCCAGAATTCAGGGC-AAAAAGCAAGTGATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915334 90 + 172585720 AGATAAGCAAACTCTCCATGAGGTAAACTTCCGTGAGACACCTCTAACAAACCCGGAGAA---------GCCAGAATTCAGGGC-AAAAAGCAACTGATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30205548 90 - 170955103 AGATAAGCAAACTCTCCATGAGGTAAACTTCCGTGAGACACCTCTAACAAACCCGGAGAA---------GCCAGAATTCAGGGC-AAAAAGCAACTGATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454140 90 +   1495729 AGACAAGCAAACTCTCCATGAGGTAAACTTCCGTGAGACACCTCTAACAAACCCGGAGAA---------GCCAGAATTCAGGGC-AAAAAGCAAGTGATC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     557749 90 -    863181 AGATAAGCAAACTCTCCATGAGGTAAACTTCCGTGAGACACCTCTAACAAACCCGGAGAA---------GCCAGAATTCAGGGC-AAAAAGCAAGTGATC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29704409 90 -  71996105 AGATAAGCAAACTCTCCATGAGGTAAACTTCCGTGAGACACCTCTAACAAACCCGGAGAA---------GCCAGAATTCAGGGC-AAAAAGCAAGTGACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     441035 90 -    735854 AGATAAGCAAACTCTCCATGAGGTAAACTTCCGTGAGACACCTCTAACAAACCCGGAGAA---------GCCAGAATTCAGGGC-AAAAAGCAAGTGATC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354119 90 -   1829203 AGATAAGCAAACTCTCCATGAGGTAAACTTCCGTGAGACACCTCTAACAAACCCGGAGAA---------GCCAGAATTCAGGGC-AAAAAGCAAGTGATC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535255 88 + 171630274 AGATAAGAAAACTCTCCTTCAGGTATACTTCCATGAGACACCTA--AAAAACCTGGAGAG---------GCCAGAATTCAGGGC-AAAAAGTAAGTGATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           339571 88 +    515838 AGATAAG-CAACTCTCCTTCAGGTAAACTTCCATGAGACACCTCT-AAAAAACTGGAGAG---------GCCAGAATTCAGGGC-AAAAAGCAAGTGATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     968742 84 -   1771730 AGATAAG-CAA-----CTTCAGGTAAACTTCCATGAGACACCTCTAAAAAACCTGGAGAG---------GCCAGAATTCAGGGC-AAAAAGCAAGTGATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     153535 90 -    486031 AGATAAGCAAACTCTCCTTCAGGTAAACTTCCATGAGATACCTCTAAAAAACCTGAAGAA---------GCCAGAATTCAGGGC-AAAAAGCAAGTGATC
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               445554 90 + 123392446 AAATAAGCAAATTCTCCTAGAAATAAATTTCCATGAGACACTTCTAACAAACCTGGAGAG---------GACAGAACTCAGGGC-AAAAAGCAAGTGATC
i micMur3.chr6             C 0 I 99
s proCoq1.NW_012149775v1     399870 90 -   1411461 AAATAAGCAAATTCTCCTATAAGTAAATTTCCATGAGACATTTCTAACAAACCTGGAGAG---------GACAGAACTCAGGGC-AAAAAGCAAGTGATC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           397837 88 +  18854210 aaataaGCAAATTCTCCTAGAAGT---TTTCCATGAGATACTTCTAACAAATCTAAAGAG---------AACAGAATTCAGGGCAAAAAAGCAAGTGACC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58141999 91 -  94987271 AAATTAGTAAATTCTTCCAGAA--------CAGCCAGTAATCACTAGCAAACTTAGAGAGAGTCTTCTAACAAATTTTCAGGGC-AAAAAGCAAGTGATC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26400148 57 +  26524999 AGA-AAGAAAGGTCTCT-------------------GACACCACTTACTAACCCAGAAAA---------------------GAC-AAGATG-ATGTGATG
i canFam3.chr35            C 0 C 0

a score=45244.000000
s hg38.chr6_GL000254v2_alt  1550245 4 +   4827813 TGGA
s panTro5.chr6             30419335 4 + 175400573 TGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30653545 4 + 173848474 TGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362328 4 +   2037526 TGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75025701 4 + 122973662 TCGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915424 4 + 172585720 TGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30205638 4 - 170955103 TGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454230 4 +   1495729 TGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     557839 4 -    863181 TGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29704499 4 -  71996105 TGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     441125 4 -    735854 TGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354209 4 -   1829203 TGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535343 4 + 171630274 CAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           339659 4 +    515838 CAGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     968826 4 -   1771730 CAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     153625 4 -    486031 CAGA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     399960 4 -   1411461 TGGA
i proCoq1.NW_012149775v1   C 0 I 256
s otoGar3.GL873550           397925 4 +  18854210 TGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58142090 4 -  94987271 TAGC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26400205 4 +  26524999 TGGG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               445644 99 + 123392446 I

a score=441755.000000
s hg38.chr6_GL000254v2_alt  1550249 44 +   4827813 -----TGTGCATACT--AGGAGTGACTGCACCCCTACTGGCCAGGCCAAAG
s panTro5.chr6             30419339 44 + 175400573 -----TGTGCATACT--AGGAGTGACTGCACCGCTACTGCCCAGGCCAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30653549 44 + 173848474 -----TGTGCATACT--AGGAGTGACTGCACCGCTACTGCCCAGGCCAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362332 44 +   2037526 -----TGTGCATACT--AGGAGTGACTGCACCCCTACTGGCCAGGCCAAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75025705 46 + 122973662 -----TGTGCATACTAGAGGAGTGACTGCACCCCTACTCGCCAGGCCAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915428 44 + 172585720 -----TGTGCATACT--AGGAGTGACTGCACCCCTACTGGCCATGTCAAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30205642 44 - 170955103 -----TGTGCATACT--AGGAGTGACTGCACCCCTACTGGCCATGTCAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454234 44 +   1495729 -----TACGCATACT--AGGAGTGACTGCACCCCTACTGGCCATGTCAAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     557843 44 -    863181 -----TGTGCACACT--AGGAGTGACTGCACCCCTACTGGCCATGTCAAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29704503 44 -  71996105 -----TGTGCATACT--AGGAGTGACTGCACCCCTACTGGCCATGTCAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     441129 44 -    735854 -----TGTGCACACT--AGGAGTGACTGCACCCCTACTGGCCATGTCAAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354213 46 -   1829203 -----TGTGCATACTAGAGGAGTGACTGCACCCCTACTGGCCATGTCAAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535347 46 + 171630274 -----TGAGCACACTAGAGGAGTGACTGCACTCCTACTAGACATGCCAAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           339663 46 +    515838 -----TGTGCATACTAGAGGAGTGGCTGCACTGCTACTAGTCATGCCAAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     968830 46 -   1771730 -----TGTGCATACTAGAGGAGTGACAGCACTCCTACTAGACATGCCAAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     153629 46 -    486031 -----TGTGCATACTAGAGGAGTGACTGCACTCCTACTAGACATGCCAAAG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           397929 46 +  18854210 -----TGTGCATACTAGAGGAGTGGGTGCACTCTTGCTGACCAGGCCAGAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58142094 36 -  94987271 -----------TATA--TAAAATGGCTACACTCTTGCTTGCTA--CCAAAG
i mm10.chr17               C 0 I 298
s canFam3.chr35            26400209 42 +  26524999 ACTGGTTAGCAGACG--AGGGGCTGGGGC----TTGCTG---ATGCCGCAG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               445644 99 + 123392446 I
e proCoq1.NW_012149775v1     399964 256 -   1411461 I

a score=110185.000000
s hg38.chr6_GL000254v2_alt  1550293 9 +   4827813 GCCTGGATC
s panTro5.chr6             30419383 9 + 175400573 GCCTGGATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30653593 9 + 173848474 GCCTGGATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362376 9 +   2037526 GCCTGGATC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75025751 9 + 122973662 GCCTGGATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915472 9 + 172585720 GCCTGGATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30205686 9 - 170955103 GCCTGGATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454278 9 +   1495729 GCCTGGATC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     557887 9 -    863181 GCCTGGATC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29704547 9 -  71996105 GCCTGGATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     441173 9 -    735854 GCCTGGATC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354259 9 -   1829203 GCCTGGATC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535393 9 + 171630274 GCCTGGATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           339709 9 +    515838 GCCTGGATA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     968876 9 -   1771730 GCCTGGATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     153675 9 -    486031 GCCTGGATA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           397975 9 +  18854210 GCCAGGACT
i otoGar3.GL873550         C 0 I 41
s canFam3.chr35            26400251 9 +  26524999 GCCTGGGCC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               445644 99 + 123392446 I
e mm10.chr17               58142130 298 -  94987271 I
e proCoq1.NW_012149775v1     399964 256 -   1411461 I

a score=591042.000000
s hg38.chr6_GL000254v2_alt  1550302 52 +   4827813 -----------CCAGGCTGTCCCAGGAGATCCCAGTGACTG-TGGATGATGCGTTCTTGTGGTC
s panTro5.chr6             30419392 52 + 175400573 -----------CCAGGCTGTCCCAGGAGATCCCAGTGACTG-TGGATGATGCGTTCCTGTGGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30653602 52 + 173848474 -----------CCAGGCTGTCCCAGGAGATCCCAGTGACTG-TGGATGATGCGTTCCTGTGGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362385 52 +   2037526 -----------CCAGGCTGTCCCAGGAGATCCCAGTGACTG-TGGATGATGCGTTCCTGTGGTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75025760 52 + 122973662 -----------CCAGGCTGTCCCAGGAGATCCCAGTGACTG-TGGATGATGCGTTCCTGTGGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915481 50 + 172585720 -----------CCAGGCTGTCCCAGGAGATCCCAGTGAC---TGGATGACACGTTCCTGTGGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30205695 50 - 170955103 -----------CCAGGCTGTCCCAGGAGATCCCAGTGAC---TGGATGACACGTTCCTGTGGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454287 50 +   1495729 -----------CCAGGCTGTCGCAGGAGATCCCAGTGAC---TGGATGACACGTTCCTGTGGTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     557896 50 -    863181 -----------CCAGGCTGTCCCAGGAGATCCTAGTGAC---TGGATGACACGTTCCTGTGGTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29704556 50 -  71996105 -----------CCAGGCTGTCCCAGGAGATCCCAGTGAC---TGGATGACACGTTTCTGTGGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     441182 50 -    735854 -----------CCAGGCTGTCCCAGGAGATCCCAGTGAC---TGCATGACACGTTCCTGTGGTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354268 50 -   1829203 -----------CCAGGCTGTCCCAGGAGATCCCAGTGAC---TGCATGACACGTTCCTGTGGTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535402 51 + 171630274 -----------CCAGGCTGTCCC-GGAGATCCCAGTGACTG-TGGACGATGCATTCCTGTGGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           339718 51 +    515838 -----------CCAGGCTGTCCG-GGAGATCCCAGTGACTG-TGGATGATGCATTCCTGTGGTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     968885 51 -   1771730 -----------CTAGGCTGTCCC-GGAGATCCCAGTGACTG-TGCACGATGCATTCCTGTGGTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     153684 51 -    486031 -----------CCAGGCTGTCCC-GGAGTTCCCAGTGACTG-TGGATGATGCATTCCTGTGGTC
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               445743 52 + 123392446 -----------CCAGGCTGTCCCAGGAGACCCCAGTGACCA-TGGACGGTGCATTCCTGTGGTC
i micMur3.chr6             I 99 I 1159
s otoGar3.GL873550           398025 52 +  18854210 -----------CCAGCCTATCCCAGGAGATCCCAGTGCCCA-CAGACAGTGCATTCCTGTGATC
i otoGar3.GL873550         I 41 C 0
s canFam3.chr35            26400260 57 +  26524999 CCTGCTTATGGCTTGGCT-------GGGCACCCAGTGGCTGCAGGGCACTGCATTTGTGGGGTC
i canFam3.chr35            C 0 C 0
e mm10.chr17               58142130 298 -  94987271 I
e proCoq1.NW_012149775v1     399964 256 -   1411461 I

a score=1054472.000000
s hg38.chr6_GL000254v2_alt  1550354  94 +   4827813 ACACTTGGCTTACTTTCCCCACGG-AGCCGAGCATCAGTGGTGCTCTGAAGCACAGTGCAGGCCACAAAAAC------TACCAGG----------------GCTCTGAACGCTAGAA
s panTro5.chr6             30419444  94 + 175400573 ACACTTGGCTTACTTTCCCCATGG-AGCTGAGCATCAGTGGTGCTCTGAAGCACAGTGCAGGCCACAAAAAC------TACCAGG----------------GCTCTGAACGCTAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30653654  94 + 173848474 ACACTTGGCTTACTTTCCCCACGG-AGCTGAGCATCAGTGGTGCTCTGAAGCACAGTGCAGGCCACAAAAAC------TACCAGG----------------GCTCTGAACGCTAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362437  94 +   2037526 ACACTTGGCTTACTTTCCCCATGG-AGCTGAGCATCAGTGGTGCTCTGAAGCACAGTGCAGGCCACAAAAAC------TACCAGA----------------GCTCTGAACGCTAGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75025812  94 + 122973662 ACACTTGGCTTACTTTCCCCACAG-AGCTCAGCATCAGTGGTGCTCTGAAGCACAGTGCAGGCCACAAAAAC------CACCAGG----------------GCTCTGAACACTAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915531  94 + 172585720 ACACTTGGCTGACTTTCCCCACGG-AGCTGAGCATCAGTGGTGCTCTGAAGCACAGTGCAGGCCACAAAAAC------CACCAGG----------------GCTCTGAACGCTAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30205745  94 - 170955103 ACACTTGGCTGACTTTCCCCACGG-AGCTGAGCATCAGTGGTGCTCTGAAGCACAGTGCAGGCCACAAAAAC------CACCAGG----------------GCTCTGAACGCTAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454337  94 +   1495729 ACACTTGGCTGACTTTCCCCACGG-AGCTGAGCATCAGTGGTGCTCTGAAGCACAGTGCAGGCCACAAAAAC------CACCAGG----------------GCTCTGAACGCTAGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     557946  94 -    863181 ACACTTGGCTGACTTTCCCCACGG-AGCTGAGCATCAGTGGTGCTCTGAAGCACAGTGCAGGCCACAAAAAC------CACCAGG----------------GCTCTGAACGCTAGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29704606  93 -  71996105 ACACTTGGCTGAC-TTCCCCACGG-AGCTGAGCATCAGTGGTGCTCTGAAGCATAGTGCAGGCCACAAAAAC------CACCAGG----------------GCTCTGAATGCTAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     441232  94 -    735854 ACACTTGGCTGACTTTCCCCACGG-AGCTGAGCATCAGTGGTGCTCTGAAGCACAGTGCAGGCCACAAAAAC------CACCAGG----------------GCTCTGAATGCTAGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354318  94 -   1829203 ATACTTGGCTGACTTTCCCCACGG-AGCTGAGCATCAGTGGTGCTCTGAAGCACAGTGCAGGCCACAAAAAC------CACCAGG----------------GCTCTGAATGCTAGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535453  94 + 171630274 ACGATTGGCTTACTTTCCCCATGG-AGCTGAGCATCAGTGGTGTTCTGAAACACACTGCATGCCACAAAAAT------CACCAGG----------------GCTCTGAACGCTAGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           339769  94 +    515838 ACAATTGGCTTACTTTCCCCATGG-AGCTGAGCATCAGTGGTGTTCTGAAGCACAGTGCACACCACAAAAAC------CACCAGG----------------GCTCTGAACGCTAGAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     968936  94 -   1771730 ACAATTGGCTTACTTTCCCCATGG-AGCTGAGCATCAGTGGTGTTCTGAAGCACAGTGCACGCTACAAAAAT------CACGAGG----------------GCTCTGAAGGCTAGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     153735  94 -    486031 ACAATAGGCTTACTTTCCCCATGG-AGCTGAGCATCAGTGGTGTTCTGAAGCACAGTGCACATCACAAAAAC------CACCAGG----------------GCTCTGAACGCTAGAA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           398077 111 +  18854210 ACATGTGGGTAACCTTCCCCCCTACAATCAAGCATTTGTGTTGTCCTGAGGCACAGTGAAGGCAATGGAAAC------CACCAGGGCCAGACCCCTGACATGCTCTGAACAGTGGAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26400317 107 +  26524999 AGGGGTGGGTGTTGCTCCCC-CAG-GGCCAGGCATCTGTGCTGTTCTGAAGGCCAATG-AGGCCACATAAACTGTCGGCACCAGG-------ATGCAACATGCTCTGCACAGTGGAC
i canFam3.chr35            C 0 C 0
e micMur3.chr6               445795 1159 + 123392446 I
e mm10.chr17               58142130 298 -  94987271 I
e proCoq1.NW_012149775v1     399964 256 -   1411461 I

a score=638797.000000
s hg38.chr6_GL000254v2_alt  1550448 47 +   4827813 ATCCCCACAGGGCTCAA-AGAGGGGCAGGAG--GTAGCAGCCAGCTGGGA
s panTro5.chr6             30419538 47 + 175400573 ATCCCCACAGGGCTCAA-AGAGGGGCAGGAG--GTAGCAGCCAGCTGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30653748 47 + 173848474 ATCCCCACAGGGCTCAA-AGAGGGGCAGGAG--GTAGCAGCCAGCTGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362531 47 +   2037526 ATCCCCACAGGGCTCAA-AGAGGGGCAGGAG--GTAGCAGCCAGCTGGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75025906 47 + 122973662 ATCCCCACGGGGCTCAA-AGAGGAGCAGGAG--GTAGCAGCCAGCTGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915625 47 + 172585720 ATCCCCACAGGGCTCAA-AGAGGGGCAGGAG--GTAGCAGCCAGCTGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30205839 47 - 170955103 ATCCCCACAGGGCTCAA-AGAGGGGCAGGAG--GTAGCAGCCAGCTGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454431 47 +   1495729 ATCCCCACAGGGCTCAA-AGAGGGGCAGGAG--GTGGCAGCCAGCTGGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     558040 47 -    863181 ATCCCCACAGGGCTCAA-AGAGGGGCAGGAG--GTGGCAGCCAGCTGGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29704699 47 -  71996105 ATCCCCACAGGGCTCAA-AGAGGGGCAGGAG--GTGGCAGCTAGCTGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     441326 47 -    735854 ATCCCCAGAGGGCTCAA-AGAGGGGCAGGAG--GTGGCAGCCAGCTGGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354412 47 -   1829203 ATCCCCACAGGGTTCAA-AGAGGGGCAGGAG--GTAGCAGCCAGCTGGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535547 47 + 171630274 GTCCCCATAGGGCTCAA-AGAGGGGCAGGAG--GTAGCGGCCAGCTGGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           339863 47 +    515838 ATCCCCACAGGGCTCAA-AGAGGGGCAGGAG--GTAGCGGCCAGCTGGGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     969030 47 -   1771730 ATTCCCACAGGGCTCAA-AGAGGGGCAGGAG--GTAGCGGCCAGCTGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     153829 47 -    486031 ATCTCCACAGGGCTCAA-AGAGGGGCAGGAG--GTAGCAGCCAGCTGGGA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     400220 47 -   1411461 ATCCCCACAGGGCTCAG-AGAGGGGTAGGAG--GCAGCAACCAGCTGGGA
i proCoq1.NW_012149775v1   I 256 I 99
s otoGar3.GL873550           398188 47 +  18854210 ATCCCCTCAGGGCTCAG-AGAGGAGCAAGAG--GCAGCAGCCCACTAGAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26400424 46 +  26524999 AGCCCCATGGGGCTCTGCAGGGGCACAGGGGCAGTGACAGCAGACA----
i canFam3.chr35            C 0 C 0
e micMur3.chr6               445795 1159 + 123392446 I
e mm10.chr17               58142130 298 -  94987271 I

a score=179134.000000
s hg38.chr6_GL000254v2_alt  1550495 15 +   4827813 GGTGGATGAGACAAG
s panTro5.chr6             30419585 15 + 175400573 GGTGGATGAGACAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30653795 15 + 173848474 GGTGGATGAGACAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362578 15 +   2037526 GGTGGATGAGACAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75025953 15 + 122973662 GGTGGATGAGACAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915672 15 + 172585720 GGTGGATGAGACAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30205886 15 - 170955103 GGTGGATGAGACAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454478 15 +   1495729 GGTGGATGAGACAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     558087 15 -    863181 GGTGGATGAGACAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29704746 15 -  71996105 GGTGGATGAGATAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     441373 15 -    735854 GGTGGATGAGACAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354459 15 -   1829203 GGTGGATGAGACAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535594 15 + 171630274 AGTGGATGAGACAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           339910 15 +    515838 ATCGGATGAGACAAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     969077 15 -   1771730 AGTGGATGAGACAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     153876 15 -    486031 AGTGGATGAGACAAG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           398235 15 +  18854210 GGCAAATGGGGAAAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26400470 15 +  26524999 GGGGGACAGGACAGG
i canFam3.chr35            C 0 I 17
e micMur3.chr6               445795 1159 + 123392446 I
e mm10.chr17               58142130 298 -  94987271 I
e proCoq1.NW_012149775v1     400267 99 -   1411461 I

a score=459312.000000
s hg38.chr6_GL000254v2_alt  1550510 49 +   4827813 GCGTTAAATTGCCCTGGTCTTGTGGCTGACCCACAGGGGAAAATTGAGG
s panTro5.chr6             30419600 49 + 175400573 GCGTTAAATTGCCCTGGTCTTGCGGCTGACCCACAGGGGAAAATTGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30653810 49 + 173848474 GCGTTAAATTGCCCTGGTCTTGCGGCTGACCCACAGGGGAAAATTGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362593 49 +   2037526 GCGTTAAATTGCCCTGGTCTTGCAGCTGACCCACAGGGGAAAATTGAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75025968 49 + 122973662 GCGTTAAAGTGCCCTGGTCTTGCGGCTGACCCACAGGGGAAAATTGGGT
i nomLeu3.chr1a            C 0 I 823
s rheMac8.chr4             30915687 49 + 172585720 GCTTTAAAGTGCCCTGGTCTTGCAGCTGACCCACAGGGGAAAATTGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30205901 49 - 170955103 GCTTTAAAGTGCCCTGGTCTTGCAGCTGACCCACAGGGGAAAATTGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454493 49 +   1495729 GCTTTAAAGTGCCCTGGTCTTGCGGCTGACCCACAGGGGAAAATTGGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     558102 49 -    863181 GCTTTAAAGTGCCCTGGTCTTGCGGCTGACCCACAGGGGAAAATTGGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29704761 49 -  71996105 GCTTTAAAGTGCCCTGGTCTTGCGGCTGACCCACAGGGGAAAATTGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     441388 49 -    735854 GCTTTAAAGTGCCCTGGTCTTGCGGCTGACCCACAGGGGAAAATTGGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354474 49 -   1829203 GCTTTAAAGTGCCCTGGTCTTGCGGCTGACCCACAGGGGAAAATTGGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535609 49 + 171630274 GCTTTCAAGGGCCCCTGTCCTGCAGCTGACCAATAGGGAAAAATTGGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           339925 49 +    515838 GCTTTCAAGGGCCCCTGTCCTGCAGCTAACTGATAGGGAAAAATTGGGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     969092 49 -   1771730 GCTTTCAAGGGCCCCTGTCCTGCAGCTGACCGATAGGGAAAAATTGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     153891 49 -    486031 GCTTTCAAGGGCCCCTGTCCTGCAGCCGACCGATAGGGAAAAATTGGGA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           398250 44 +  18854210 GCTGTGAAG-GCCCTTGTCCTATGACTGACCCACCAGGGGAGTCA----
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               445795 1159 + 123392446 I
e mm10.chr17               58142130 298 -  94987271 I
e proCoq1.NW_012149775v1     400267 99 -   1411461 I
e canFam3.chr35            26400485 17 +  26524999 I

a score=386983.000000
s hg38.chr6_GL000254v2_alt  1550559 36 +   4827813 GTTCTTCATATTTGTGCCAGAATATCTGTCTAATGT
s panTro5.chr6             30419649 36 + 175400573 GTTCTTCATATTTGTGCCAGAATATCTGTCTAATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30653859 36 + 173848474 GTTCTTCATATTTGTGCCAGAATATCTGTCTAATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362642 36 +   2037526 GTTCTTCATATTTGTGCCAGAATATCTGTCTAATGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75026840 36 + 122973662 GTTCTTCATATTTGTGCCGGAATATCTGTCTAATGT
i nomLeu3.chr1a            I 823 C 0
s rheMac8.chr4             30915736 36 + 172585720 GTTCCTCATATTTGTGCCTGAATATTTGTCTAACGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30205950 36 - 170955103 GTTCCTCATATTTGTGCCTGAATATTTGTCTAACGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454542 36 +   1495729 GTTCCTCATATTTGTGCCTGAATATTTGTCTAATGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     558151 36 -    863181 GTTCCTCATATTTGTGCCTGAATATTTGTCTAATGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29704810 36 -  71996105 GTTCCTCATATTTGTGCCTGAATATTTGTCTAATGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     441437 36 -    735854 GTTCCTCATATTTGTGCCTGAATATTTGTCTAATGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354523 36 -   1829203 GTTCCTCATATTTGTGCCTGAATATCTGTCTAATGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535658 36 + 171630274 GTTCTTCATTTTTGTGCCTGAATATTTGTCTGATGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           339974 36 +    515838 GTTCTTCATTTTTGTGCCTGAATATTTGTTTGATGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     969141 36 -   1771730 GTTCTTCATTTGTGTGCCTGAATATTTGTCTGATGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     153940 36 -    486031 GTTCTTCATTTTTGTGCCTGAATATTTGTCTAATGT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           398294 36 +  18854210 GTTCTCCATGCTTGTGCCTGGTTATTAGTCTGATGC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               445795 1159 + 123392446 I
e mm10.chr17               58142130 298 -  94987271 I
e proCoq1.NW_012149775v1     400267 99 -   1411461 I
e canFam3.chr35            26400485 17 +  26524999 I

a score=678138.000000
s hg38.chr6_GL000254v2_alt  1550595 58 +   4827813 TGAATCATGAACCAAGCTCTCTT--GTCTAAAATATTCCTAAGTGTCACTTGGTGCTTTG
s panTro5.chr6             30419685 58 + 175400573 TGAATCATGAACCAAGCTCTCTC--GTCTAAAATATTCCTAAGTGTCACTTGGTGCTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30653895 58 + 173848474 TGAATCATGAACCAAGCTCTCTC--GTCTAAAATATTCCTAAGTGTCACTTGGTGCTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362678 58 +   2037526 TGAATCATGATCCAAGCTCTCTC--GTCTAAAATATTCCTAAGTGTCACTTGGTGCTTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75026876 60 + 122973662 TGAATCATGAACCAAGCTCTCTCTTGTCTAAAATATTCCTAAGTGTCACTTGGTGCTTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915772 56 + 172585720 TGAATCAAGAACTAAGCTCTCTCTTGTCTAAAATATTCC----TGTCACTTGGTGCTTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30205986 60 - 170955103 TGAATCAAGAACTAAGCTCTCTCTTGTCTAAAATATTCCTAAGTGTCACTTGGTGCTTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454578 60 +   1495729 TGAATCAAGAACTAAGCTCTCTCTCATCTAAAATATTCCTAAATGTCACTTGGTGCTTTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     558187 60 -    863181 TGAATCAAGAACCACGCTCTCTCTTGTCTAAAATATTCCTAAGTGTCACTTGGTGCTTTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29704846 60 -  71996105 TGAATCAAGAACTAAGCTCTCTCTCGTCTAAAATATTCCTAAGCGTCACTTGGTGCTTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     441473 60 -    735854 TGAATCAAGAACTACGCTCTCTCTTGTCTAAAATATTCCTAAGTGTCACTTGGTGCTTTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354559 60 -   1829203 TGAATCAAGAACCAGGCTCTCTCTTGTCTAAAATATTCCTAAGTATCACTTGGTGCTTTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535694 59 + 171630274 TGAATCATGAACCAAGCTCTCTCTTGTCTCAAATATTCCTAAGTGTCATTTGGTGCTTC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           340010 59 +    515838 TGAATCATGAACCAAGTTCTCTCTTATCTAAAATATTCCTAAGTGTCATTTGGTGCTTT-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     969177 59 -   1771730 TGAATCATGAACCAAGCTCTCTCTTGTCTAAAATATTCTTAAGTGTCATTTGGCGCTTT-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     153976 59 -    486031 TGAATCATGAACCAAGCTCTCTCTTGTCTAAAATATTCCTAAGTGTCATTTGGTGCTTT-
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     400366 60 -   1411461 TGAATCACGAACCAAGCTCTCTCTTGCCTAAAATATCCCTAGGTGTCCTTTGGCGCTCTG
i proCoq1.NW_012149775v1   I 99 C 0
s otoGar3.GL873550           398330 60 +  18854210 TGAATCACGAACCAAGCTCTCTCTTGCCTAACACACTCCTAAGTGTCCTTTGGTCCTTTG
i otoGar3.GL873550         C 0 I 391
e micMur3.chr6               445795 1159 + 123392446 I
e mm10.chr17               58142130 298 -  94987271 I
e canFam3.chr35            26400485 17 +  26524999 I

a score=262839.000000
s hg38.chr6_GL000254v2_alt  1550653 33 +   4827813 CACCA---AATATAGGAAGGAATCCTTTATCATCTT
s panTro5.chr6             30419743 33 + 175400573 CACCA---AATATAGGAAGGAATCCTTTATCATCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30653953 33 + 173848474 CACCA---AATATAGGAAGGAATCCTTTATCATCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362736 33 +   2037526 CACCA---AATATAGGAAGGAATCCTTTATCATCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75026936 33 + 122973662 CACCA---AATATAGGAAGGAATCCTTTATCATCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915828 33 + 172585720 CACCA---AATATAGGAAGGAATCCTTTATCATCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30206046 33 - 170955103 CACCA---AATATAGGAAGGAATCCTTTATCATCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454638 33 +   1495729 CACCA---AATATAGGAAGGAATCCTTTATCATCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     558247 33 -    863181 CACCA---AATATAGGAAGGAATCCTTTATCATCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29704906 33 -  71996105 CACCA---AATATAGGAAGGAACCCTTTATCATCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     441533 33 -    735854 CACCA---AATATTGGAAGGAATCCTTTATCATCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354619 33 -   1829203 CATCA---AATATAGGAAGGAATCCTTTATCATCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535753 21 + 171630274 ---------------GATAAAATCCTTTATTATCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           340069 21 +    515838 ---------------GATAAAACCCTTTTTCATCTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     969236 21 -   1771730 ---------------GATAAAATCCTTTATCGTCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     154035 21 -    486031 ---------------GATAAAATCCTTTATCATCTC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     400426 36 -   1411461 CACCAGAGGATATAAGAAGGAATCCTTTATCATCTT
i proCoq1.NW_012149775v1   C 0 I 810
e micMur3.chr6               445795 1159 + 123392446 I
e mm10.chr17               58142130 298 -  94987271 I
e canFam3.chr35            26400485 17 +  26524999 I
e otoGar3.GL873550           398390 391 +  18854210 I

a score=508796.000000
s hg38.chr6_GL000254v2_alt  1550686 48 +   4827813 GTGGaatggttcaaaccttgactacacatcagatttgtagtcttcaaa
s panTro5.chr6             30419776 48 + 175400573 GTGGaatggttcaaaccttgactacacatcagatttgtagtcttcaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30653986 48 + 173848474 GTGGaatggttcaaaccttgactacacatcagatttgtagtcttcaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362769 48 +   2037526 GTGGaatggttcaaaccttgactacacatcagatttgtagtcttcaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75026969 48 + 122973662 GTGGaatggttcaaaccttgactacacatcagatttgtagtcttcaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915861 48 + 172585720 GTGGGAtggttcaaaccctaactacacatcagatttgtagtcttcaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30206079 48 - 170955103 GTGGGATGGTTCAAACCCTAACTACACATCAGATTTGTAGTCTTCAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454671 48 +   1495729 GTGGGATGGTTCAAACCCTAACTACACATCAGATTTGTAGTCTTCAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     558280 48 -    863181 GTGGGAtggttcaaaccctaactacacatcagatttgtagtcttcaaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29704939 48 -  71996105 GTGGGATGGTTCAAACCCTAACTACACATCAGATTTGTAGTCTTCAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     441566 48 -    735854 GTGGGAtggttcaaaccctaactacacatcagatttgtagtcttcaaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354652 48 -   1829203 GTGGGAtggttcgaaccctaactacacatcagatttgcagtcttcaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535774 48 + 171630274 ATGGGATAGTTCAaaccctgactacacatcagatttgtagtcttcaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           340090 48 +    515838 ATGGGAtggttcaaaccctgactacatatcagatttgtagtcttcaaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     969257 48 -   1771730 ATGGGAtggttcaaaccctgactacacatcagatttgtagtcttcaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     154056 48 -    486031 ATGGGAtggttcaaaccctgactacacatcagatttgtagtcttcaaa
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               445795 1159 + 123392446 I
e mm10.chr17               58142130 298 -  94987271 I
e proCoq1.NW_012149775v1     400462 810 -   1411461 I
e canFam3.chr35            26400485 17 +  26524999 I
e otoGar3.GL873550           398390 391 +  18854210 I

a score=796357.000000
s hg38.chr6_GL000254v2_alt  1550734 70 +   4827813 ctggtgagtcttcaaaacatacctagaccaactgacttaggatctccagaggtggcccaggctctggtat
s panTro5.chr6             30419824 70 + 175400573 ctggtgagtcttcaaaacatacccagaccaactgacttagaatctccagaggtggcccaggctctggtac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30654034 70 + 173848474 ctggtgagtcttcaaaacatacccagaccaactgacttagaatctccagaggtggcccaggctctggtac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362817 70 +   2037526 ctggtgagtcttcaaaacatacccagaccaactgacttagaatctccagaggtggcccaggctctggtat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75027017 70 + 122973662 ctggtgagtcttcaaaatacacccagaccaactgaattagaatctccagaggtggaccaggctctggtat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915909 70 + 172585720 ctggtgagtcttcaaaacatacccagaccaactgaattagaatctccagaggtggcccaggttctggtat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30206127 70 - 170955103 CTGGTGAGTCTTCAAAACATAcccagaccaactgaattagaatctccagaggtggcccaggttctggtat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454719 70 +   1495729 TTGGTGAGTCTTCAAAACATAcccagaccaactgaattagaatctccagaggtggcccaggttccggtat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     558328 70 -    863181 ctggtgagtcttcaaaacatacccagaccaactgaattagaatctccagaggtggcccaggttctggtat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29704987 70 -  71996105 CTGGTGAGTCTTCAAAACATATccagatcaactgaattagaatctccagaggtggcccaggttctggtat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     441614 70 -    735854 ctggtgagtcttcaaaacatacccagaccaactgaattagaatgtccagaggtggcccaggttctggtat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354700 70 -   1829203 ctggtgagtcttcaaaacatacccagatcaactgaattagaatctccagaggtggcccaggttctggtat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535822 70 + 171630274 ctgatgagttttcaaaacatacccagaccaactgaattagaatctccagaggtggcccagactctggtat
i calJac3.chr4             C 0 I 5
s saiBol1.JH378341           340138 70 +    515838 ctgatgagttttcaaaacatacccagaccaactgaattagaatctccagaagtgggccagactctggtat
i saiBol1.JH378341         C 0 I 5
s cebCap1.NW_016107755v1     969305 70 -   1771730 ctgatgagttttcaaaacatacccagaccaactgaattagaatctccagaggtggcccagacTCTGGTAT
i cebCap1.NW_016107755v1   C 0 I 5
s aotNan1.NW_018496901v1     154104 70 -    486031 ctgatgagttttcaaaacatacccagatcaactgaattagaatctccagaggtggcccagactctggtat
i aotNan1.NW_018496901v1   C 0 I 310
s otoGar3.GL873550           398781 69 +  18854210 ctggggaggcttcaaaccatacccagatcaactgaatcagaatctctgaaggtggcccgggtt-tgatag
i otoGar3.GL873550         I 391 C 0
e micMur3.chr6               445795 1159 + 123392446 I
e mm10.chr17               58142130 298 -  94987271 I
e proCoq1.NW_012149775v1     400462 810 -   1411461 I
e canFam3.chr35            26400485 17 +  26524999 I

a score=10920.000000
s hg38.chr6_GL000254v2_alt  1550804 1 +   4827813 t
s panTro5.chr6             30419894 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30654104 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362887 1 +   2037526 t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75027087 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915979 1 + 172585720 t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30206197 1 - 170955103 t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454789 1 +   1495729 t
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     558398 1 -    863181 t
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29705057 1 -  71996105 t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     441684 1 -    735854 t
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354770 1 -   1829203 t
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535897 1 + 171630274 t
i calJac3.chr4             I 5 C 0
s saiBol1.JH378341           340213 1 +    515838 t
i saiBol1.JH378341         I 5 C 0
s cebCap1.NW_016107755v1     969380 1 -   1771730 T
i cebCap1.NW_016107755v1   I 5 C 0
s otoGar3.GL873550           398850 1 +  18854210 t
i otoGar3.GL873550         C 0 I 2
e micMur3.chr6               445795 1159 + 123392446 I
e mm10.chr17               58142130 298 -  94987271 I
e proCoq1.NW_012149775v1     400462 810 -   1411461 I
e canFam3.chr35            26400485 17 +  26524999 I
e aotNan1.NW_018496901v1     154174 310 -    486031 I

a score=71856.000000
s hg38.chr6_GL000254v2_alt  1550805 7 +   4827813 aaaaaac
s panTro5.chr6             30419895 7 + 175400573 aaaaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30654105 7 + 173848474 aaaaaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362888 7 +   2037526 aaaaaac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75027088 7 + 122973662 aaaaaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915980 7 + 172585720 aaaaaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30206198 7 - 170955103 aaaaaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454790 7 +   1495729 aaaaaac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     558399 7 -    863181 aaaaaac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29705058 7 -  71996105 aaaaaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     441685 7 -    735854 aaaaaac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354771 6 -   1829203 aaaaaa-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535898 7 + 171630274 aaaaaac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           340214 7 +    515838 aaaaaac
i saiBol1.JH378341         C 0 I 299
s cebCap1.NW_016107755v1     969381 7 -   1771730 AAAAAAC
i cebCap1.NW_016107755v1   C 0 I 345
s aotNan1.NW_018496901v1     154484 6 -    486031 aaaaaa-
i aotNan1.NW_018496901v1   I 310 C 0
s otoGar3.GL873550           398853 7 +  18854210 aaaaaac
i otoGar3.GL873550         I 2 C 0
e micMur3.chr6               445795 1159 + 123392446 I
e mm10.chr17               58142130 298 -  94987271 I
e proCoq1.NW_012149775v1     400462 810 -   1411461 I
e canFam3.chr35            26400485 17 +  26524999 I

a score=35176.000000
s hg38.chr6_GL000254v2_alt  1550812 3 +   4827813 aaa
s panTro5.chr6             30419902 3 + 175400573 aaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30654112 3 + 173848474 aaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362895 3 +   2037526 aaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75027095 3 + 122973662 aaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915987 3 + 172585720 aaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30206205 3 - 170955103 aaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454797 3 +   1495729 aaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     558406 3 -    863181 aaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29705065 3 -  71996105 aaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     441692 3 -    735854 aaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354777 3 -   1829203 aaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30535905 3 + 171630274 gaa
i calJac3.chr4             C 0 I 289
s saiBol1.JH378341           340520 3 +    515838 aaa
i saiBol1.JH378341         I 299 C 0
s cebCap1.NW_016107755v1     969733 3 -   1771730 aaa
i cebCap1.NW_016107755v1   I 345 C 0
s aotNan1.NW_018496901v1     154490 3 -    486031 aaa
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           398860 3 +  18854210 aaa
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               445795 1159 + 123392446 I
e mm10.chr17               58142130 298 -  94987271 I
e proCoq1.NW_012149775v1     400462 810 -   1411461 I
e canFam3.chr35            26400485 17 +  26524999 I

a score=3749172.000000
s hg38.chr6_GL000254v2_alt  1550815 346 +   4827813 cttcccaggagattctaaagtctatccaggactgtgaatcactAG---AAc-cccttatttacagaggaggacagtgagtgccagagcctcggactcatttgcccagcagcagagctggctggcagca---------aggccagcactagc--acgaggtggggtgaggtgcacctcccagctctgggctccttccattccaccaT-ACACTGCACTTTGGTGCCTGGAAAATGAACTCTTCCCTGCCCATATGGAGTGCTGTGGAGGGTTagcctcacaggcagaggaaa-tcatccgcc----ggagaaagggtagcggtgaatttgaggagctgacaattggccacaggtggagtgcagtgagg
s panTro5.chr6             30419905 346 + 175400573 cttcccaggagattctaaagtctatccaggactgtgaatcactAG---AAc-cccttatttacagaggaggaaagtgagtgccagagcctcggactcatttgcccagcagcagagctggctggcagca---------aggccagcactagc--acgaggtggggtgaggtgcacctcccagctctgggctccttccattccaccaT-GCACTGCACTTTGGTGCCTGGAAGATGAACTCTTCCCTGCCCATATGGAGTGCTGTGGAGGGTTagcctcacaggcagaggaaa-tcatctgcc----ggagaaagggtagcggtgaatttgaggagctgacaattggccacaggtggagtgcagtgagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30654115 346 + 173848474 cttcccaggagattctaaagtctatccaggactgtgaatcactAG---AAc-cccttatttacagaggaggaaagtgagtgccagagcctcggactcatttgcccagcagcagagctggctggcagca---------aggccagcactagc--acgaggtggggtgaggtgcacctcccagctctgggctccttccattccaccaT-GCACTGCACTTTGGTGCCTGGAAAATGAACTCTTCCCTGCCCATATGGAGTGCTGTGGAGGGTTagcctcacaggcagaggaaa-tcatctgcc----ggagaaagggtagcggtgaatttgaggagctgacaattggccacaggtggagtgcagtgagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     362898 346 +   2037526 cttcccaggagattctaaagtctatccaggactgtgaatcactAG---AAc-cccttatttacagaggaggaaagtgagtgccagagcctcggactcatttgcccagcagcagagctggctggcagca---------aggccagcactagc--acgaggtggggtgaggtgcacctcccagctctgggctccttccattccaccaT-ACACTGCACTTTGGTGCCTGGAAAATGAACCCTTCCCTGCCCATATGGAGTGCTGTGGAGGGTTagcctcacaggcagaggaaa-tcatctgcc----ggagaaagggtagcggtgaatttgaggagctgacaattggccacaggtgcagtgcagtgagg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75027098 346 + 122973662 cttcccaggagattctaaagtctatccaggactgtgaatcactAC---AAc-cccttatttacagaggaagaaagtgagtgccagagcctcggactcatttgcccagcagcagagctggctggcagca---------aggccagcactagc--acgaggtggggtgaggtgcacctcccagctctgggctccttccactccaccaT-ACACTGCACTTTGGTGCCTGGAAAATGAACTCTTCCCTGCCCATATGGAGTGCTGTGGAGGGTTAGCCTCACAGGCAGAGGAAA-TCCTCTGCC----GGAGAAAGGGTAGCggtgaatttgaggagctgacaattggccacaggtggagtgcagtgagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30915990 345 + 172585720 cttcccaggagattctaaagtcta-tcaggactgtgaatcactAG---aacccctttatttacagaggaggaaagtgagtgccagagcctcggaccaatttgtccagcagcacagctggctggcagca---------aggccagtgctagc--acgaggtgcagtgaggtgcacctcccagctctgggctccttccactccaccaT-ACACTGCACTTTGGTGCCTGGAAAATGAACTCTCCCTTGCCCATATGGAGTGCTGTGGAGGGT-agcctcacaggcagaggaaa-tcaactgcc----agagaaagggtagtggtgagtttgaggagttgacaattggccacaggtggagtgcagtgagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30206208 346 - 170955103 cttcccaggagattctaaagtcta-ccaggactgtgaatcactAG---aacccccttatttacagaggaggaaagtgagtgccagagcctcggaccaatttgtccagcagcagagctggctggcagca---------aggccagtgctagc--acgaggtgcagtgaggtgcacctcccagctctgggctccttccactccaccaT-ACACTGCACTTTGGTGCCTGGAAAATGAACTCTCCCCTGCCCATATGGAGTGCTGTggagggtgagcctcacaggcagaggaaa-tcaactgcc----agagaaagggtagtggtgagtttgaggagttgacaattggccacaggtggagtgcagtgagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     454800 347 +   1495729 cttcccaggagattctaaagtctatccaggactgtgaatcactAA---aacccccttatttacagaggaggaaagtgagtgccagagcctcggaccaatttgcccagcagcagagctggctggcagca---------aggccagtgctagc--acgaggtgcagtgaggtgcacctcccagctctgggctccttccactccaccaT-ACACTGCACTTTGGTGCCTGGAAAATGAACTCTCCCCTGCCCATATGGAGTGCTGTggagggtgagcctcacaggcagaggaaa-tcaactgcc----agagaaagggtagtggtgagtttgaggagctgacaattggccacaggtggagtgcagtgagg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     558409 346 -    863181 cttcccaggagattctaaagtctatccaggactgtgaatcactAG---aacccccttatttacagaggaggaaagtgagtgccagagcctcggaccaatttgcccagcagcagagctggctggcagca---------aggccagtgctagc--acgaggtgcggtgaggtgcacctcccagctctgggctccttccactccaccaT-ACACTGCACTTTGGTGCCTGGAAAATGAACTCCCCCCTGCCCATATGGAGTGCTGTGGAGGGT-agcctcacaggcagaggaaa-tcaactgcc----agagaaagggtagcggtgagtttgaggagctgacaattggccacaggtggagtgcagtgagg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29705068 345 -  71996105 cttcccaggagattctaaagtctat-caggactgtgaatcactAG---aacccccttatttacagaggaggaaggtgagtgccagagcctcggaccaatttgcccagcagcagagctggctggcagca---------aggccagcgctaac--acgaggtgcggtgaggtgcacctcccagctctgggctccttccactccaccaT-ACACTGCACTTTGGTGCCTGGAAAATAAACTCTCCCCTGCCCATATGGAGTGCTGTGGAGGGT-agcctcacaggcagaggaaa-tcaactgcc----ggagaaagggtagcagtgagtttgcggagctgacaattggccacaggtggagtgcagtgagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     441695 344 -    735854 cttcccaggagattctaaagtctatccaggactgtgaatcactAG---aacccccttatttacagaggaggaaagtgagtgccagagcctcggaccaatttgcccagcagcagagctggctggcagca---------aggccagtgctagt--acgaggtgcggtgaggtgcacctcccagctctgggctccttccact---cCAT-ACACTGCACTTTGGTGCCTGGAAAATGAACTCTCCCCTGCCCATATGGAGTGCTGTggagggtgagcctcacaggcagaggaaa-tcaactgcc----agagaaagggtagcggtgagtttgaggagctgacaattggccacaggtggagtgcagtgagg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     354780 347 -   1829203 cttcccaggagattctaaagtctatccaggactgtgaatcactAG---aactcccttatttacagagcaggaaagtgagtgccagagcctcagactaatttgcccagcagcagagctggctggcagca---------aggccagcgctagc--acgaggtgcggtgaggtgcaccttccagctctgggctccttccactccaccaT-ACACTGCACTTTGGTGCCTGGAAAATGAACTCTCCCCTGCCCACTTGCAGTGCTGTggagggtgagcctcacaggcagaggaaa-tcaactgcc----agagaaagggtagcggtgagtttgaggagctgacaactggtcacaggtggagtgcagtgagg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30536197 347 + 171630274 cttcctaggagattctaaagtctatccaggactgtgaatcacCAG---aacttccttatttacagaggaggaaagtgagtgccagagccttggactgatttgcccagcggcagagctgcctggcagca---------aggccagagctagc--acGAAGTGGGGTGAGGTGCACCTCCCGGCTCTGGGCTTCTTCCACTCCACCAC-ATGCTGCATTCTGGTGCCTGGAAAATGAACTCTCCCCCACCCATAGGGAGTGCTGCAAAGGGTgagcctcacaggcagaggaaa-caagctgcc----agagaaagggtagcagtgagtttgaggagctgacaattggccacaggtggagtgcagtagtg
i calJac3.chr4             I 289 C 0
s saiBol1.JH378341           340523 346 +    515838 cttcctaggagattctaaagtctatccaggactatgaatcacCAG---aacccccttatttacagaggaggaaagtgagtgtcagagccttggactgatttgcccagcggcagagctgccttgcagca---------aggccagagctagc--acaaagtggggtgaggtgcacctcccagctctgggctttttccactccaccac-ATGCTGCACTTTGGTGCCTGGAAAATAAACTCT-CCCCACCCATAGGGAGTGCTGCAAAGGGTgagcctcacaggcagaggaaa-ccagctgcc----agataaagggtagctttgagtttgaggagctgacaattggccacaggtggagtgcagtgggg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     969736 347 -   1771730 CTTCCTAAGAGATTCTAAAGTCTATCCAGGAGTGTGAATCACCAG---aacccccttatttacagaggaagaaagtgagggccagagccttggactgatttgcccagtggcagagctgcctggcagca---------aggccagagctagc--acgaagtggggtgaggtgcacctcccaactctgggcttcttccactccaccac-atgctgcacttTGGTGCCTGGAAAATGAACTCTCCCCCACCCATAGGGAGTGCTGCAAAGGGTgagcctcacaggcagaggaaa-ccagctgcc----agagaaagggtagtggtaagtttgaggagctgacaattggccacaggtggagtgcagtgggg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     154493 347 -    486031 cttcctaggagattctaaagtctatccaggactgtgaatcacCAG---aacccccttatttacagaggaggaaagtgagtgccagagccttggactgatttgcccagcagcagagctgcctggcagca---------aggccagagctagc--acgaagtggggtgaggtgcacctcccggctctgggcttcttccactccaccat-atgctgcacttTGGTGCCTGGAAAATGAACTCTCCCCCACCCATAAGGAGTGCTGCAAAGGGTgagcctcacaggcagaggaaa-ccagctgcc----agagaaagggtagaggtgagtttgaggagctgacaattggctacaggtggagtgcagtgggg
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           398863 355 +  18854210 ctacacaggtgattctaatatctcaccaagCCTACAA--CCCTAGCCAAATCCCCTTATTTATAGCCAAGGTAAATGAGAGCCAGAGCCTCAGCTTCATTTGCCCAGTGGCAAAGCTGGCTGGCAGTAGGCCAGCTGAGGTAGGCAGTAGCCAGTGAGGTAGGGTGAGGAACCCCTCCCATCTC--AACTCCTTCCACTCCACTACAACACTACACTT---TGCCTGAAAGATGAACTTTCCCTCACCCCTAAGGA-TGATGTGGAGGGTGAGCCTCACAGGCACAGGAAACCCAACTGCCCAAGAGAGACAGGGTAGTGATAAGTCTGAGGA----ACGACTGGCCAGATGTAGAGTGTGGCAGGG
i otoGar3.GL873550         C 0 I 15
e micMur3.chr6               445795 1159 + 123392446 I
e mm10.chr17               58142130 298 -  94987271 I
e proCoq1.NW_012149775v1     400462 810 -   1411461 I
e canFam3.chr35            26400485  17 +  26524999 I

a score=713235.000000
s hg38.chr6_GL000254v2_alt  1551161 54 +   4827813 cgagcagaggaagggtggagaaacaggagggaacagattatgcaaga--ctgtgac
s panTro5.chr6             30420251 54 + 175400573 cgagcagaggaagggtggagaaacaggagggaacagattatgcaaga--ctgtgac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30654461 54 + 173848474 cgagcagaggaagggtggagaaacaggagggaacagattatgcaaga--ctgtgac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     363244 54 +   2037526 cgagcagaggaagggtggagaaacaggagggaacagattatgcaaga--ctgtgac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75027444 56 + 122973662 tgagcagagggagggtggagaaacaggagggaacagattatgcaagactctgtgac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30916335 56 + 172585720 agagcagagggagggtggagaaacaggagggaacagattatgcaagactctgtgac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30206554 56 - 170955103 agagcagagggagggtggagaaacaggagggaacagattatgcaagactctgtgac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     455147 56 +   1495729 cgagcagagggagggtggagaaacaggagggaacagattatgcaagactctgtgac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     558755 56 -    863181 agagcagagggagggtggagaaacaggagggaacagattatgcaagactctgtgac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29705413 56 -  71996105 agagcagagggagggtggagaaacaggagggaacagattatgcaagactctgtgac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     442039 56 -    735854 agagcagagggagggtggagaaacaggagggaacagattatgcaagactctgtgac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     355127 56 -   1829203 agagcagagggagggtggagaaacaggagggaacagattatgcaagactctgtgac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30536544 56 + 171630274 cgagcagagggagggtggagaaacaggagggaacagattatgcaagactctgtgac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           340869 56 +    515838 taagcagagggagggtggagaaacaggagggaacagattatgcaagactctgtgac
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     970083 54 -   1771730 cgagcagagggagggtggagaaacaggagggaacagattatgcaaga--ctgtgac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     154840 56 -    486031 ggagcagagggagggtggagaaacaggagggaacagcttatgcaagactctgtgac
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     401272 54 -   1411461 cgagcacagggagggcagagaaacaggagggaacagattatgcaagactc--tggc
i proCoq1.NW_012149775v1   I 810 C 0
s otoGar3.GL873550           399233 56 +  18854210 TGAGCAGAGGGAGGGTGGAGAAGTAGGAGGAAACAGATTATGCAAGACTCTGTGGC
i otoGar3.GL873550         I 15 C 0
e micMur3.chr6               445795 1159 + 123392446 I
e mm10.chr17               58142130 298 -  94987271 I
e canFam3.chr35            26400485 17 +  26524999 I

a score=592192.000000
s hg38.chr6_GL000254v2_alt  1551215 45 +   4827813 ccaggttaagaattttggacttt--------------------------atcctaacagccctgggaagcc
s panTro5.chr6             30420305 45 + 175400573 ccaggttaagaattttggacttt--------------------------atcctaacagccctgggaagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30654515 45 + 173848474 ccaggttaagaattttggacttt--------------------------atcctaacagccctgggaagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     363298 45 +   2037526 ccaggttaagaattttggacttt--------------------------atcctaacagccctgggaagcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75027500 45 + 122973662 ccaggttaagaattttggacttt--------------------------atcctaacagccctaggaagcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30916391 45 + 172585720 ccaggttaagaattttggacttt--------------------------atcctaacagccctgagaagcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30206610 45 - 170955103 ccaggttaagaattttggacttt--------------------------atcctaacagccctgggaagcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     455203 45 +   1495729 ccaggttaagaattttggacttt--------------------------atcctaacagccctgggaagcc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     558811 45 -    863181 ccaggttaagaattttggacttt--------------------------atcctaacagccctgggaagcc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29705469 45 -  71996105 ccaggttaagaattttggacttt--------------------------atcctaacagccctgggaagcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     442095 45 -    735854 ccaggttaggaattttggacttt--------------------------atcctaacagccctgcgaagcc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     355183 45 -   1829203 ccaggttaagaattttggacttt--------------------------atcctaacagccctgggaagcc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30536600 45 + 171630274 ccaggttaagaattttggacttt--------------------------atcctaacagccctgggcagcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           340925 45 +    515838 ccaggttaagaattttggacttt--------------------------atcctaacagcccttggcagcc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     970137 45 -   1771730 ccaggttaagaattttggacttt--------------------------atcctaacagccctgggcagcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     154896 45 -    486031 ccaggttaagaattttggacttt--------------------------atcctaacagccctgggcagcc
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     401326 44 -   1411461 ccacgttaggaactttggacttt--------------------------atcctaacagccctgggagcc-
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           399289 70 +  18854210 CCATGTTAAGAATTCTGGACTTTggccagcatggtggctcacacctgtaatactagcactctgggatgtc-
i otoGar3.GL873550         C 0 I 273
s mm10.chr17               58142428 45 -  94987271 CCAGATAAAGAACTCTGAATTTC--------------------------ATCCCAACAGACCTGGGAAACC
i mm10.chr17               I 298 C 0
e micMur3.chr6               445795 1159 + 123392446 I
e canFam3.chr35            26400485 17 +  26524999 I

a score=23217.000000
s hg38.chr6_GL000254v2_alt  1551260 3 +   4827813 att
s panTro5.chr6             30420350 3 + 175400573 att
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30654560 3 + 173848474 att
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     363343 3 +   2037526 att
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75027545 3 + 122973662 att
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30916436 3 + 172585720 ttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30206655 3 - 170955103 ttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     455248 3 +   1495729 ttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     558856 3 -    863181 ttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29705514 3 -  71996105 ttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     442140 3 -    735854 ttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     355228 3 -   1829203 ttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30536645 3 + 171630274 att
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           340970 3 +    515838 att
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     970182 3 -   1771730 att
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     154941 3 -    486031 att
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     401370 3 -   1411461 act
i proCoq1.NW_012149775v1   C 0 C 0
s mm10.chr17               58142473 3 -  94987271 ATT
i mm10.chr17               C 0 C 0
e micMur3.chr6               445795 1159 + 123392446 I
e canFam3.chr35            26400485 17 +  26524999 I
e otoGar3.GL873550           399359 273 +  18854210 I

a score=697094.000000
s hg38.chr6_GL000254v2_alt  1551263 64 +   4827813 gagg--gtttaagcagcaggaTGTTGAAAGTTattcaacagctagcaga----tgtttattaggtgccga
s panTro5.chr6             30420353 64 + 175400573 gagg--gtttaagcagcaggaTGTTAAAAGTTattcaacagctagcaga----tgtttattaggcgccga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30654563 64 + 173848474 gagg--gtttaagcagcaggaTGTTAAAAGTTattcaacagctagcaga----tgtttattaggcgccga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     363346 64 +   2037526 gagg--gtttaagcagcaggaTGTTAAAAGTTattcaacagctagcaga----tgtttattaggtgccga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75027548 64 + 122973662 gagg--gtttaagcagcaggaTGTTAAAAGTTACTCAACAGCTagcaga----cgtttattaggtgccta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30916439 68 + 172585720 gagg--gtttaagcagcaggaTGTTAAAatttattcaacagctagcagatgtttgtttattaggtgccta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30206658 68 - 170955103 gagg--gtttaagcagcaggaTGTTAAAATTTATTCAACAGCTAGCAGATGTTtgtttattaggtgccta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     455251 64 +   1495729 gagg--gtttaagcagcaggaTGTTAAAatttattcaacagctagcaga----tgtttattaggtgccta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     558859 68 -    863181 gagg--gtttaagcagcaggaTGTTAAAatttattcatcagctagcagatgtttgtttattaggtgccta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29705517 68 -  71996105 gagg--gtttaagcagcaggaTGTTAAAatttattcaacagctagcagatgtttgtttattaggtgccta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     442143 68 -    735854 gagg--gtttaagcagcaggaTGTTAAAatttattcaacagctagcagatgtttgtttattaggtgccta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     355231 67 -   1829203 gagg--gttt-agcagCAAGATGTTAAAatttattcaacagctagcagatgtttgtttattaggtgccta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30536648 64 + 171630274 gagg--gtttaagcagcagggtgTTAAAatttattcaacagctagcaga----tgtttattaggtgccta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           340973 66 +    515838 gaggttgtttaagcagcagggtgTTAAAatttattcaatagctagcaga----tgtttattaggtgccta
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     970185 64 -   1771730 gagg--gtttaagcagcagggtgTTAAAatttattcaacagctagcaga----tgtttattaggtgccta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     154944 64 -    486031 gagg--gtttaagcagcagggtgTTAAAatttattcaacagctagcaga----tgtttattaggtgccta
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     401373 63 -   1411461 gagg--gtttATGCAGCACTATGTTGAAattcacttaacagttaacaa-----tatttattaggcaccta
i proCoq1.NW_012149775v1   C 0 C 0
s mm10.chr17               58142476 31 -  94987271 GAGA--GTTTAAGCAT-----------Gatttactgagcaccta--------------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26400502 62 +  26524999 GGGG--CTCTGAGCAGCAGG-TGCCAGAGGTAAACCAAAAGGTTAC-GA----CACAGGCTAGATGCCCA
i canFam3.chr35            I 17 C 0
e micMur3.chr6               445795 1159 + 123392446 I
e otoGar3.GL873550           399359 273 +  18854210 I

a score=1987230.000000
s hg38.chr6_GL000254v2_alt  1551327 161 +   4827813 ctatgtgtcaggc--accgaggttacagcagagaacaaaagtggcaaactccctg---tcctaccagaacttacatccagtgAC----CTGAGGAATCCTTTAGAAGCTGA----AATCAGATCCAAC-TGTGG-GATCATCAAACCCTCAAGGGTTTCCTGATTTACATAAACCT
s panTro5.chr6             30420417 161 + 175400573 ctatgtgtcaggc--accgaggttacagcagagaacaaaagtggcaaactccctg---tcctaccagaacttacatccagtgAC----CTGAGGAATCCTTTAGAAGCTGA----AATCAGATACAAC-TGTGG-GATCATCAAACCCTCAAGGGTTTCCTGATTTACATAAACCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30654627 161 + 173848474 ctatgtgtcaggc--accgaggttacagcagagaacaaaagtggcaaactccctg---tcctaccagaacttacatccagtgAC----CTGAGGAATCCTTTAGAAGCTGA----AATCAGATCCAAC-TGTGG-GATCATCAAACCCTCAAGGGTTTCCTGATTTACATAAACCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     363410 161 +   2037526 ctatgtgtcaggc--accgaggttacagcagagaacaaaagtggcaaactccctg---tcctaccagaacttacatccagtgAC----CTGAGGAATCCTTTAGAAGCTGA----AACCAGATCCAAC-TGTGG-GATCATCAAACCCTCAAGGGTTTCCTGATTTACATAAACCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75027612 161 + 122973662 ctatgtgtcaggc--accgaggttacagcagagaacaaaaatggcaaactccctg---tcctaccagaacttatatccagtAAC----CTGAGGAATCCTTTAGAAGCTGA----AATCGGATCCAAC-TGTGG-GATCATCACACCCTCAAGGGTTTCCTGATTTACATAAACCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30916507 169 + 172585720 ctatgtgtcaggc--actgaggttacagcagagaacaaaaatggcaaactccctg---tcctaccagaacttacatccagtgACCTAACTGAGGAATCCTTTAGAAGCTGAAATCAATCAGATCCAAC-TGTGG-GATCATCAAATCCTCAAGGGTTTCCTGATTTACATAAACCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30206726 169 - 170955103 ctatgtgtcaggc--actgaggttacagcagagaacaaaaatggcaaactccctg---tcctaccagaacttacatccagtgACCTAACTGAGGAATCCTTTAGAAGCTGAAATCAATCAGATCCAAC-TGTGG-GATCATCAAATCCTCAAGGGTTTCCTGATTTACATAAACCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     455315 169 +   1495729 ctatgtgtcaggc--actgaggttacagcagagaacaaaaatggcaaactccctg---tcctaccagaacttacatccagtgACCTAACTGAGGAATCCTTTAGAAGCTGAAATCAATCAGATCCAAC-TGTGG-GATCATCAAATCCTCAAGGGTTTCCTGATTTACATAAACCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     558927 169 -    863181 ctatgtgtcaggc--actgaggttacagcagagaacaaaaatggcaaactccctg---tcctaccagaacttacatccagtgACCTAACTGAGGAATCCTTTAGAAGCTGAAATCAATCAGATCCAAC-TGTGG-GATCATCAAATCCTCAAGGGTTTCCTGATTTACATAAACCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29705585 169 -  71996105 ctatgtgtcaggc--actgaggttacagcagagaacaaaaatggcaaactccctg---tcctaccagaacttacatccagtgACCTAACTGAGGAATCCTTTAGAAGCTGAAATCAATCAGATCCAAC-TGTGG-GATCATCAAATCCTCAAGGGTTTCCTGATTTACATAAACCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     442211 169 -    735854 ctatgtgtcaggc--actgaggttacagcagagaacaaaaatggcaaactccctg---tcctaccagaacttacatccagtgACCTAACTGAGGAATCCTTTAGAAGCTGAAATCAATCAGATCCAAC-TGTGG-GATCATCAAATCCTCAAGGGTTTCCTGATTTACATAAACCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     355298 165 -   1829203 ctatgtgtcaggc--actgaggttacagcagagaacaaaaatggcaaactccctg---tcctaccagaacttatatccagtgACCTAACTGAGGAATCCTTTAGAAGCTGA----AATCAGATCCAAC-TGTGG-GATCATCAAATCCTCAAGGGTTTCCTGATTTACATAAATCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30536712 160 + 171630274 ctatgtgtcaggc--actgaggttacggcagagaatgaaaatggcaaactccctg---ccttaccagaactta-atccagtgacctaacagaggaACCCTGCAGAAGCTGA----AATCAGATCCAAC-TGTGG-GATGATCAAACCCTC-AGGATTTCCTGATTTACATAAa---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           341039 163 +    515838 ctatgtgtcaggc--actgaggttatggcagagaataaaaatggcaaactccctg---ccttaccagaactta-ATCCAGTGACCTAACTGAGGAATCCTGCCGAAGCTGA----AATCAGATCCAAC-TGTGG-GATCATCAAAccctc-aggacttcctgatttacataaaccg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     970249 159 -   1771730 atatgtgtcaggc--actgaggttacggcagagaatgaaaatggcaaactccctg---ccttaccagaactta-ATCCAGTAACCT----GAGGAATCCTGCAGAAGCTGA----AATCAGATCCAAC-TGTGG-GATCATCAAACCCTC-AGGATTTCCTGATTTACATAAacct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     155008 163 -    486031 ctatgtgtcaggc--actgaggttacggcagagaatgaaaatggcaaactccctg---ccttaccagaactta-atccagtgACCTAACTGAGGAATTCTGCAGAAGCTGA----AATCAGATCCAAC-TGTGG-GATCATCAAACCCTC-AGGATTTCCTGATTTACATAAacct
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     401436 166 -   1411461 ctatgtgccaagc--actgaggttatggcaggcaacaaaaatggtaaagtcccta---ccctaccagagatcacacctagtgACATAATCGAGGAATCCTTTAAAAGCTGA----AATCAGATCCAAC-TGTGGGGATTATCAAACCTTCAAGAGTTTCCTGCTTTACCTAAACCT
i proCoq1.NW_012149775v1   C 0 I 429
s otoGar3.GL873550           399632 159 +  18854210 CTAAATATAaagc--actgaggttacagcaggaaacaaaaatggcaaaat--------ccttaccacagcttacatctagtgACATAATTGAGGAATCCTTTAGGAGCTAA----AATCAGATCCAAC-TAGGGCGATTATCAAAACTTCAAGGGTTTCCTGATTCACCTAAAC--
i otoGar3.GL873550         I 273 C 0
s mm10.chr17               58142507 140 -  94987271 ctatgtttcaggttaagtgaggttaaatgggggaacaaaa---gaacattccttgAAATTTGACACTGACACAAGTCTAGTGAC---------------------TGCAGC----AATCAGATTTAGCATCAGG-AACTATTAAGCCTGGAAGGGCTTCTCCTCTTGAA-------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26400564 154 +  26524999 -CCTGTGCCCACC--ACTGAGGATTTGGCAGCAAACAGGTGTGGTCAG-TGCCTA---CCCTCCCAGAGCTTCTATCAGGTGATGCCACTGAAAGACCCTTTGGAAGCTGA----GACCAGAGCTGAC-TATGGGGGTCACACAGCCCTCAAAGGGGTGCCACTCG----------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               445795 1159 + 123392446 I

a score=1213072.000000
s hg38.chr6_GL000254v2_alt  1551488 119 +   4827813 CCTCT--CCCCTTTGCTGCCCCAGTGCTGCAGCCACTCTGG----------CCTTTTGATCCTCAAACACACTC------GGTCACGTGTTAAACTGCCAATCTGCCCGGGTGACCAACCAGGTTAAACCCCTCAAT
s panTro5.chr6             30420578 119 + 175400573 CCTCT--CCCCTTTGCTGCCCCAGTGCTGCAGCCACTCTGG----------CCTTTTGATCCTCAAACACACTC------GGTCACGTGTTAAACTGCCAATCTGCCCGGGTGACCAACCAGGTTAAACCCCTCAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30654788 120 + 173848474 CCTCTC-CCCCTTTGCTGCCCCAGTGCTGCAGCCACTCTGG----------CCTTTTGATCCTCAAACACACTC------GGTCACGTGTTAAACTGCCAATCTGCCCGGGTGACCAACCAGGTTAAACCCCTCAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     363571 119 +   2037526 CCTCT--CCCCTTTGCTGCCCCAGTGCTGCAGCCACTCTGG----------CCTTTTGATCCTCAAACACACTC------GGTCACGTGTTCAACTGCCAATCTGCCCAGGTGACCAACCAGGTTAAACCCCTCAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75027773 108 + 122973662 CCTCT--CCCCTT-----------TGCTGCAGCCACTCTGG----------CCTTTTGATCCTCAAACACACTC------GGTCACGTGTTAAACTGCCAATCTTCCCGGGTGACCAACCAGGTTAAACCCCTCAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30916676 119 + 172585720 CTTCT--CTCCTTTGCTGCCCCAGTGCTGCAGCCACTCTGG----------CCTTTTGTTCCGCAAACACACTC------GGTCACATGTTAAACTGCCAATCTGCCCGGGTGACCAACCTGGTTAAACCCCTCAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30206895 119 - 170955103 CTTCT--CTCCTTTGCTGCCCCAGTGCTGCAGCCACTCTGG----------CCTTTTGTTCCGCAAACACACTC------GGTCACATGTTAAACTGCCAATCTGCCCGGGTGACCAACCTGGTTAAACCCCTCAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     455484 119 +   1495729 CTTCT--CTCCTTTGCTGCCCCAGTGCTGCAGCCACTCTGG----------CCTTTTGTTCCGCAAACACACTC------GGTCACATGTTAAACTGCCAATCTGCCCGGGTGACCAACCTGGTTAAACCCCTCAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     559096 119 -    863181 CTTCT--CTCCTTTGCTGCCCCAGTGCTGCAGCCACTCTGG----------CCTTTTGTTCCTCAAACACACTC------GGTCACATGTTAAACTGCCAATCTGCCCGGGTGACCAACCTGGTTAAACCCCTCAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29705754 119 -  71996105 CTTCT--CTCCTTTGCTGCCCCAGTGCTGCAGCCACTCTGG----------CCTTTTGTTCCTCAAACACACTT------GGTCACATGTTAAACTGCCAATCTGCCCGGGTGACCAACCTGGTTAAACCCCTCAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     442380 119 -    735854 CTTCT--CTCCTTTGCTGCCCCAGTGCTGCAGCCACTCTGG----------CCTTTTGTTCCTCAAACACACTC------GGTCACATGTTAAACTGCCAATCTGCCCGGGTGACCAACCTGGTTAAACCCCTCAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     355463 119 -   1829203 CTTCT--CTCCTTTGCAGCCCCAGTGCTGCAGCCACTCTGG----------CCTTTTGTTCCTCAAACACACTC------GGTCCCACGTTAAACTGCCAATCTGCCCGGGTGACCAACCTGGTTAAACCCCTCAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30536872 131 + 171630274 cctctctctcctttgctgcctcagtgctgcagccactctggcc----t--tccttttgttcctcaagcacactcggtcatggtcACCTGTTAAACTGCCAATCTGCCTGGGTGATCAACCTGGTTCAACCCCTCAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           341202 131 +    515838 cctctctctcccttgctgcctcactgctgcagccactctggcc----t--tccttttgttcctcaagcacacccagtcatggtcACCTGTTAAACTGCCAATCTGCCCGGATGATCAACCTGGTCAAACCCCTCAAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     970408 131 -   1771730 cctctctctcctttgctgcctcagtgctgcagccactctggcc----t--tccttttgttcctcaagcacactcggtcatggtcACCTGTTAAACTGCCAATCTGCCCAGGTGATCAACCTGGTTAAACCCCTCAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     155171 131 -    486031 cctctctctcctttgctgcctcagtgctgcagccactctggcc----t--tccttttattcctcaagcacactcggtcatggtcACCTGTTAAAGTGCCAATCTGCTCAGGTGATCAACCTGGTTAAACCCCTCAAT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           399791 120 +  18854210 -----GTCTcctttgctccctcagtgatccagccatcctggcc----t--tccttttgtccctcaaatacTCTT------GCTTCTGTGttaaaatgccaatctgctcatgtaaccaccctaattaaacccttcaat
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58142647 113 -  94987271 CTTTT--CTCCTCTGCTGGCAC--TGCTCCAGTTACTACAGCCATCTT--CCTTTTTGTTCCTCACACATTCCC------AGCCTAGTAT--AAGTGCCAAT--------GTGGTTA--CTGGTTAAGACTCCAGAA
i mm10.chr17               C 0 I 2
s canFam3.chr35            26400718 103 +  26524999 CCTCT--TCCCCCCACGGCCTAGGTCC--CAGCCACAGAGG------TAGGCTCTCAGCTCCCCAAACACT---------AGCCACATGTTCAGATGCAG---TGCCCG-GTGA-----------AAACCCCTCTGA
i canFam3.chr35            C 0 C 0
e micMur3.chr6               445795 1159 + 123392446 I
e proCoq1.NW_012149775v1     401602 429 -   1411461 I

a score=493920.000000
s hg38.chr6_GL000254v2_alt  1551607 33 +   4827813 GGCTTTCTGGTGCTCCAGGAATAAAGTCAAAAC
s panTro5.chr6             30420697 33 + 175400573 GGCTTTCTGGTGCTCCAGGAATAAAGTCAAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30654908 33 + 173848474 GGCTTTCTGGTGCTCCAGGAATAAAGTCAAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     363690 33 +   2037526 GGCTTTCTGGTGCTCCAGGAATAAAGTCAAAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75027881 33 + 122973662 GGCTTTCTGGTGCTCCAGGAATAAAGTCAAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30916795 33 + 172585720 GGCTTTCTGCTGCTCCAGGAATAAAGTCAAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207014 33 - 170955103 GGCTTTCTGGTGCTCCAGGAATAAAGTCAAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     455603 33 +   1495729 GGCTTTCTGGTGCTCCAGGAATAAAGTCAAAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     559215 33 -    863181 GGCTTTCTGGTGCTCCAGGAATAAAGTCAAAAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29705873 33 -  71996105 GACTTTCTGGTGCTCCAGGAATAAAGTCAAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     442499 33 -    735854 GGCTTTCTGGTGCTCCAGGAATAAAGTCAAAAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     355582 33 -   1829203 GGCTTTCTGGCGCTCCAGGAATAAAGTCAAAAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30537003 33 + 171630274 GGCTTTCTGGTGCCCCTGGAATAAAGTCAAAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           341333 33 +    515838 GGCTTTCTGGTGCCCCAGGAATAAAGTCAAAAC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     970539 24 -   1771730 GGCTTTCT---------GGAATAAAGTCAAAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     155302 33 -    486031 GGCTTTCTGGTGCCCCAGGAATAAAGTCAAAAC
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               446954 33 + 123392446 GGCTTTCTGGTGCTCCAAGAATAAAGTCAAAAC
i micMur3.chr6             I 1159 I 731
s otoGar3.GL873550           399911 33 +  18854210 ggctttctggtgctccaagattaaagccaaaac
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58142762 33 -  94987271 GGCTTTCTGGCACCCCAGGAATAAAGTCAAGAC
i mm10.chr17               I 2 C 0
s canFam3.chr35            26400821 33 +  26524999 TGCCTTGTGAGGCTCCAGGGGTACAGTGGAATC
i canFam3.chr35            C 0 C 0
e proCoq1.NW_012149775v1     401602 429 -   1411461 I

a score=716319.000000
s hg38.chr6_GL000254v2_alt  1551640 71 +   4827813 TCCTGTCCTTCCTTTCTTCTGTGAGGAGGCTGTCCCAGGAGATCCTAGCTGGATTCCCAGataatcatggc
s panTro5.chr6             30420730 71 + 175400573 TCCTGTCCTTCCTTTCTTCTGTGAGGAGGCTGTCCCAGGAGATCCTAGCTGGATTCCCAGataatcatggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30654941 71 + 173848474 TCCTGTCCTTCCTTTCTTCTGTGAGGAGGCTGTCCCAGGAGATCCTAGCTGGATTCCCAGataatcatggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     363723 71 +   2037526 TCCTGTCCTTCCTTTCTTCTGTGAGGAGGCTGTCCCAGGAGATCCTAGCTGGATTCCCAGataatcatggc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75027914 71 + 122973662 TCCTGTCCTTCCTTTCTTCTGTGAGGAGGCTGTCCCAGGAGATCCTAGCTGGATTCCCAGATAATCACAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30916828 70 + 172585720 TCCTGCCCTTCCTTTCTTCTGTGAGGAGGCTGTCTCAGGAGATCCTAGCTGGA-TCCCAGATAATCATGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207047 70 - 170955103 TCCTGCCCTTCCTTTCTTCTGTGAGGAGGCTGTCTCAGGAGATCCTAGCTGGA-TCCCAGATAATCATGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     455636 70 +   1495729 TCCTGCCCTTCCTTTCTTCTGTGAGGAGGCTGTCTCAGGAGATCCTAGCTGGA-TCCCAGATAATCATGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     559248 70 -    863181 TCCTGCCCTTCCTTTCTTCTGTGAGGAGGCTGTCTCAGGAGATCCTAGCTGGA-TCCCAGATAATCATGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29705906 70 -  71996105 TCCTGCCCTTCCTTTCTTCTGTGAGGAGGCTGTCTCAGGAGATCCTAGCTGGA-TCCCAGATAATCATGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     442532 70 -    735854 TCCTGCCCTTCCTTTCTTCTGTGAGGCGGCTGTCTCAGGAGATCCTAGCTGGA-TCCCAGATAATCATGGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     355615 70 -   1829203 TCCTGCCCTTCCTTTCTTCTGTGAGGAGGCTGTCTCCGGAGATCCCAGCTGGA-TCCCAGATAATCATGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30537036 70 + 171630274 TCCTGCCCTTCCTTTCTTCTGTGAGGAGGCTGTCCCAGGAGATTCTAGCTGGA-TCTTAGATAATcatggc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           341366 70 +    515838 TCCTGCCCTTCCTTTCTTCTGTGAGGAGGCTGTCCCAGGAGATCCTCACTGGA-TCTTAGATAATcatggc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     970563 70 -   1771730 TCCTGCCCTTCCTTTCTTCTGTGAGGAGGCTGTCCCAGGAGATCCTAGCTGGA-TCTTAGATAGTcatggc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     155335 70 -    486031 TCCTGCCCTTCCTTTCTTCTGTGAGGAGGCTGTCCCAGGAGATCCCAGCTGGA-TCTTAGATAATcatggc
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           399944 38 +  18854210 -----accttcccttcctcagtgagg----------------------------ctgcagataatcatggc
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58142795 46 -  94987271 TTTTCCCCTTCCCCACC----------------CCCAAGGGCCTCCAGCTG---T------TAACCACAGC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26400854 21 +  26524999 ---------TCTCTCCCACCCCCAGGAGGC-----------------------------------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               446987 731 + 123392446 I
e proCoq1.NW_012149775v1     401602 429 -   1411461 I

a score=558982.000000
s hg38.chr6_GL000254v2_alt  1551711 73 +   4827813 ccagcctgtgtctccaggctcatttcctgccactccccac------------ctcaaactcacagccaaaccaaaccgctctcca
s panTro5.chr6             30420801 73 + 175400573 ccagcctgtgtctccaggctcatttcctgccactccccac------------ctcaaactcacagccaaaccaaaccgctctcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655012 73 + 173848474 ccagcctgtgtctccaggctcatttcctgccactccccac------------ctcaaactcacagccaaaccaaaccgctctcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     363794 73 +   2037526 ccagcctgtgtctccaggctcatttcctgccactccccac------------ctcaaactcacagccaaaccaaaccgctctcca
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30916898 54 + 172585720 -------------ccaggctcatttcctgccacttcccac------------------ctcacagccaaaccaaaccgctctcca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207117 54 - 170955103 -------------ccaggctcatttcctgccacttcccac------------------ctcacagccaaaccaaaccgctctcca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     455706 54 +   1495729 -------------ccaggctcatttcctgccacttcccac------------------ctcacagccaaaccaaaccgctctcca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     559318 54 -    863181 -------------ccaggctcatttcctgccacttcccac------------------ctcacagccaaaccaaaccgctctcca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29705976 54 -  71996105 -------------ccaggctgatttcctgccacttcccac------------------ctcacagccaaaccaaaccgctctcca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     442602 54 -    735854 -------------ccaggctcatttcctgccacttcccac------------------ctcacagccaaaccaaaccgctctcca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     355685 54 -   1829203 -------------ccaggctcatttcctgccacttcccac------------------ctcacagccaaaccaaaccgctctcca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30537106 79 + 171630274 ccagcccctgtcttcaggctcatttcctgccactccccacctcaaa------ctcaaactcacagccaaaccaaaccgctctcca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           341436 79 +    515838 ccagcccctgtcttcaggctcatttcctgccactccccacctcaaa------ctcaaatccacagccaaaccaaacagctctcca
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     970633 79 -   1771730 ccagcccctgtcttcaggctcatttcctgccactccccatctcaaa------ctcaaactcacagccaaaccaaaccactctcca
i cebCap1.NW_016107755v1   C 0 I 352
s aotNan1.NW_018496901v1     155405 79 -    486031 ccagcccctgtcttcaggatcatttcctgccactccccacctcaaa------ctcaaactcacagccaaaccaaactgctctcca
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           399982 83 +  18854210 ccagcccttgtctccacgctcatttctggccactccccacctcaaatttgatctgaaccccacagccaaactgaat--ccctcca
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58142841 47 -  94987271 -CTAGTCCTATCTCCCAGCTCATTTCCTGCCACT-CCTAC------------CTTCAACTC------------------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26400875 77 +  26524999 CCAGCCCTGGtctgcagcctcatttcctcctgctgtccac-ttagg------cctgaccccacaggcaaactgaagc-ccctcca
i canFam3.chr35            C 0 C 0
e micMur3.chr6               446987 731 + 123392446 I
e proCoq1.NW_012149775v1     401602 429 -   1411461 I
e nomLeu3.chr1a            75027985  0 + 122973662 C

a score=159172.000000
s hg38.chr6_GL000254v2_alt  1551784 18 +   4827813 tgcctcaa--agtgctatgc
s panTro5.chr6             30420874 18 + 175400573 tgcctcaa--agtgctatgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655085 18 + 173848474 tgcctcaa--agtgctatgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     363867 18 +   2037526 tgcctcaa--agtgctatgc
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30916952 18 + 172585720 tgcctcaa--agtgccatgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207171 18 - 170955103 tgcctcaa--agtgccatgc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     455760 18 +   1495729 tgcctcaa--agtgccatgc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     559372 18 -    863181 tgcctcaa--agtgccatgc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706030 18 -  71996105 tgcctcaa--agtgccatgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     442656 18 -    735854 tgcctcaa--agtgccatgc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     355739 18 -   1829203 tgcctcaa--agtgccatgc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30537185 18 + 171630274 agattcaa--agtgccatgc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           341515 18 +    515838 agactcaa--agtgccatgc
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496901v1     155484 18 -    486031 agactcaa--agtgccatgc
i aotNan1.NW_018496901v1   C 0 I 332
s otoGar3.GL873550           400065 18 +  18854210 tgctttaa--agtgccatgc
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58142888  9 -  94987271 TGCCTCTA--A---------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26400952 20 +  26524999 tacctccagcagggccacgc
i canFam3.chr35            C 0 C 0
e micMur3.chr6               446987 731 + 123392446 I
e proCoq1.NW_012149775v1     401602 429 -   1411461 I
e cebCap1.NW_016107755v1     970712 352 -   1771730 I
e nomLeu3.chr1a            75027985  0 + 122973662 C

a score=132352.000000
s hg38.chr6_GL000254v2_alt  1551802 21 +   4827813 tctttcctggctaagcccttc
s panTro5.chr6             30420892 21 + 175400573 tctttcctggctaagcccttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655103 21 + 173848474 tctttcctggctaagcccttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     363885 21 +   2037526 tctttcctggctaagcccttt
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30916970 21 + 172585720 tctttcctggctaagcccgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207189 21 - 170955103 tctttcctggctaagcccttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     455778 21 +   1495729 tctttcctggctaagcccgtt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     559390 21 -    863181 tctttcctggctaagcccgtt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706048 21 -  71996105 tctttcctggctaagcccgtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     442674 21 -    735854 tctttcctggctaagcccgtt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     355757 21 -   1829203 tctttcctggctaagcccttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30537203 17 + 171630274 -attttc---ctaatcctgtt
i calJac3.chr4             C 0 I 299
s saiBol1.JH378341           341533 17 +    515838 -attttc---ctaatcctgtt
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           400083 21 +  18854210 tcttttctacccaagctcctt
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58142897 11 -  94987271 ----------CCAAACCCTGC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26400972 21 +  26524999 tccctcctacctgagccctct
i canFam3.chr35            C 0 C 0
e micMur3.chr6               446987 731 + 123392446 I
e proCoq1.NW_012149775v1     401602 429 -   1411461 I
e aotNan1.NW_018496901v1     155502 332 -    486031 I
e cebCap1.NW_016107755v1     970712 352 -   1771730 I
e nomLeu3.chr1a            75027985  0 + 122973662 C

a score=16652.000000
s hg38.chr6_GL000254v2_alt  1551823 3 +   4827813 gac
s panTro5.chr6             30420913 3 + 175400573 gac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655124 3 + 173848474 gac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     363906 3 +   2037526 gac
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30916991 3 + 172585720 gac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207210 3 - 170955103 gtc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     455799 3 +   1495729 gac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     559411 3 -    863181 gac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706069 3 -  71996105 gac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     442695 3 -    735854 gac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     355778 3 -   1829203 gac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30537519 3 + 171630274 gaa
i calJac3.chr4             I 299 C 0
s saiBol1.JH378341           341550 3 +    515838 gaa
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           400104 3 +  18854210 gaa
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58142908 2 -  94987271 -TC
i mm10.chr17               C 0 C 0
s canFam3.chr35            26400993 3 +  26524999 gaa
i canFam3.chr35            C 0 C 0
e micMur3.chr6               446987 731 + 123392446 I
e proCoq1.NW_012149775v1     401602 429 -   1411461 I
e aotNan1.NW_018496901v1     155502 332 -    486031 I
e cebCap1.NW_016107755v1     970712 352 -   1771730 I
e nomLeu3.chr1a            75027985 0 + 122973662 C

a score=68329.000000
s hg38.chr6_GL000254v2_alt  1551826 7 +   4827813 aatgtaa
s panTro5.chr6             30420916 7 + 175400573 aatgtaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655127 7 + 173848474 aatgtaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     363909 7 +   2037526 aatgtaa
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30916994 7 + 172585720 aatgtaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207213 7 - 170955103 aatgtaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     455802 7 +   1495729 aatgtaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     559414 7 -    863181 aatgtaa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706072 7 -  71996105 aatgtaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     442698 7 -    735854 aatgtaa
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     355781 7 -   1829203 aatgtaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30537522 7 + 171630274 aatgtta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           341553 7 +    515838 aatgtta
i saiBol1.JH378341         C 0 I 309
s cebCap1.NW_016107755v1     971064 7 -   1771730 aatgtta
i cebCap1.NW_016107755v1   I 352 C 0
s aotNan1.NW_018496901v1     155834 7 -    486031 aatgtta
i aotNan1.NW_018496901v1   I 332 C 0
s otoGar3.GL873550           400107 7 +  18854210 aatgcta
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58142910 7 -  94987271 ATTATCA
i mm10.chr17               C 0 C 0
s canFam3.chr35            26400996 7 +  26524999 tatgcta
i canFam3.chr35            C 0 C 0
e micMur3.chr6               446987 731 + 123392446 I
e proCoq1.NW_012149775v1     401602 429 -   1411461 I
e nomLeu3.chr1a            75027985 0 + 122973662 C

a score=409568.000000
s hg38.chr6_GL000254v2_alt  1551833 43 +   4827813 t--t--------ccttctgcctagaacaccatccctttcccacttagcaaatg
s panTro5.chr6             30420923 43 + 175400573 t--t--------ccttctgcctagaacaccatccctttcccacttagcaaatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655134 43 + 173848474 t--t--------ccttctgcctagaacaccatccctttcccacttagcaaatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     363916 43 +   2037526 t--t--------ccttctgcctagaacaccatccctttcccacttagcaaatg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30917001 51 + 172585720 t--tccttctgcccttctgcctagaacaccatccctttcccacttagcaaatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207220 43 - 170955103 t--t--------ccttctgcctagaacaccatccctttcccacttagcaaatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     455809 43 +   1495729 t--t--------ccttctgcctagaacaccatccctttcccacttagcaaatg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     559421 43 -    863181 t--t--------ccttctgcctagaacaccatccctttcccacttagcaaatg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706079 43 -  71996105 t--t--------ccttctgcctagaacaccatccctttcccacttagcaaatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     442705 45 -    735854 ttct--------ccttctgcctagaacaccatccctttcccacttagtaaatg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     355788 43 -   1829203 t--t--------ccttctgcctagaacaccatccctttcccacttagcaaatg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30537529 43 + 171630274 t--t--------ccctctgtctagaacaccatccctttcccacttggcaaatt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           341869 43 +    515838 t--t--------ccctctgtctagaacaccatcccttttccacttggcaaatt
i saiBol1.JH378341         I 309 C 0
s cebCap1.NW_016107755v1     971071 43 -   1771730 t--t--------ccctctgtctagaacaccatcccttttccacttggcaaatt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     155841 43 -    486031 t--t--------ccctctgtctagaacaccatcccttttccacttggcaaatc
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           400114 37 +  18854210 t--t--------tcctctacctagaaca------ctttaccatgtagcaaact
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58142917 24 -  94987271 ---T--------TCCTCTGCAT----TACAACCCCTTTC--------------
i mm10.chr17               C 0 C 0
s canFam3.chr35            26401003 31 +  26524999 --ct--------ccctctgcactgagcaccattcctcttcc------------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               446987 731 + 123392446 I
e proCoq1.NW_012149775v1     401602 429 -   1411461 I
e nomLeu3.chr1a            75027985  0 + 122973662 C

a score=758220.000000
s hg38.chr6_GL000254v2_alt  1551876 59 +   4827813 ccttttctagcttgaagtctcagctgaaagccacctcctctggcaattctttcctgacc
s panTro5.chr6             30420966 59 + 175400573 ccttttctagcttgaagtctcagctgaaagccacctcctctggcaattctttcctgacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655177 59 + 173848474 ccttttctagcttgaagtctcagctgaaagccacctcctctggcaattctttcctgacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     363959 59 +   2037526 ccttttctagcttgaagtctcagctgaaagccacctcctctggcaattctttcctgacc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75027985 59 + 122973662 CTTTTTCTAGcttgaagtctcagctgaaagccacctcctctggcaattctttcctgacc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30917052 59 + 172585720 ccttttctagcttgaagtctcagctgaaagccacctcctctggcaattttttcctgacc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207263 59 - 170955103 ccttttctagcttgaagtctcagctgaaagccacctcctctggcaattttttcctgacc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     455852 59 +   1495729 ccttttctagcttgaagtctcagctgaaagccacctcctctggcaattttttcctgatc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     559464 59 -    863181 ccttttctagcttgaagtctcagctgaaagccaccacctctggcaattttttcctgacc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706122 59 -  71996105 ccttttctagcttgaagtctcagctgaaagccacctcctctggcaattttttcctgacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     442750 59 -    735854 ccttttctagcttgaagtctcagctgaaagccaccacctctggcaattttttcctgacc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     355831 59 -   1829203 ccttttctagcttgaagtctcagctgaaagccacctcctctggcaattctttcctgacc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30537572 59 + 171630274 ccttttctagcttgaagtctcagctgaaagccaccttctctggcaattatttcctgacc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           341912 59 +    515838 ccttttctagcttgaagtctcagctgaaagccacctcctctagcaattatttcctgacc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     971114 59 -   1771730 ccttttctagcttgaagtctcagctgaaagccacctcctctagcaattatttcctgacc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     155884 59 -    486031 ccttttctagcttgaagtctcagctgaaagccacctcctctggcaattatttcctgacc
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           400151 44 +  18854210 ccttttccagcttgaag---------------gccacctctggcaaacctttcctgagc
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58142941 49 -  94987271 ------CTTGTTGGAGTTCTCAGCTGAACACCATCCCTTCTGGCAA----CTCCTGACC
i mm10.chr17               C 0 I 3735
s canFam3.chr35            26401034 51 +  26524999 --------agctggaaatacctgctgaaggccatgtcctctggcaatgcttccctgagc
i canFam3.chr35            C 0 C 0
e micMur3.chr6               446987 731 + 123392446 I
e proCoq1.NW_012149775v1     401602 429 -   1411461 I

a score=319771.000000
s hg38.chr6_GL000254v2_alt  1551935 31 +   4827813 tgtc-agattgggtccacatgtagt----ctagtta
s panTro5.chr6             30421025 31 + 175400573 tgtc-agattgggtccacatgtagt----ctagcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655236 31 + 173848474 tgtc-agattgggtccacatgtagt----ctagcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     364018 31 +   2037526 tgtc-agattgggtccacatgtagt----ctagtta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75028044 31 + 122973662 tgtc-agattgggtccacatgtagt----ctagtca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30917111 31 + 172585720 tgtc-agattgggtccacatgtagt----ccagtta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207322 31 - 170955103 tgtc-agattgggtccacatgtagt----ccagtta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     455911 31 +   1495729 tgtc-agattgggtccacatgtagt----ctagtta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     559523 31 -    863181 tgtc-agattgggtccacatgtagt----ctagtta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706181 31 -  71996105 tgtc-agattgggtccacatgtagt----ctagtta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     442809 31 -    735854 tgtc-agattgggtccacatgcagt----ctagtta
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     355890 31 -   1829203 tgtc-agactgggtccacatgtagt----ctagtaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30537631 31 + 171630274 tgtc-agaatgggtccacaagcagt----ctagtta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           341971 31 +    515838 tgtc-agaatgggtccaagAGTAGT----CTAGTTA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     971173 31 -   1771730 tgtc-agaatgggtccaagagtagt----ctagtta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     155943 31 -    486031 tgtc-agaatgggtccacaagtagt----ctagtta
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           400195 32 +  18854210 tgtcaagactaggaccacacatgct----ctccctc
i otoGar3.GL873550         C 0 I 1
s canFam3.chr35            26401085 35 +  26524999 tgat-aggctgagaccacatgctctgccacctgtga
i canFam3.chr35            C 0 C 0
e micMur3.chr6               446987 731 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     401602 429 -   1411461 I

a score=3755223.000000
s hg38.chr6_GL000254v2_alt  1551966 309 +   4827813 tacagccccaaaaca-ccccatgctgcaccctgtacttctctgcagttttaagtcctgacttattagtgtaattactcgcttaacaccagctttttccatgaaacaaggagagagat------tgtgtctgtcttatccccagaatcta-catattacttggcacagagtagacaataaaAACTGACTGAGAAAACA----AAGCACA----agcacagagtatctgacacaaagaagatgcttcctacacatctgctgaaggaatgCGAACAATCTTAGCCACCTGCCCTTTCTCTCCAGCAAGATGGTAGTAAATTGGTAGAG
s panTro5.chr6             30421056 309 + 175400573 tacagccccaaaaca-ccccatgctgcaccctgtacttctctgcaattttaagtcctgacttattagtgtaattactcgcttaacaccagctttttccatgaaacaaggagagagat------tgtgtctgtcttatccccagaatcta-catattacttggcacagagtagacaataaaAACTGACTGAGAAAACA----AAGCACA----agcacagagtatctgacacaaagaagatgcttcctacacatctgctgaaggaatgCGAACAATCTTAGCCACCTGCCCTTTCTCTCCAGCAAGATGGTAGTAAATTGGTAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655267 309 + 173848474 tatagccccaaaaca-ccccatgctgcaccctgtacttctctgcaattttaagtcctgacttattagtgtaattactcgcttaacaccagctttttccatgaaacaaggagagagat------tgtgtctgtcttatccccagaatcta-catattacttggcacagagtagacaataaaAACTGACTGAGAAAACA----AAGCACA----agcacagagtatctgacacaaagaagatgcttcctacacatctgctgaaggaatgCGAACAATCTTAGCCACCTGCCCTTTCTCTCCAGCAAAATGGTAGTAAATTGGTAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     364049 315 +   2037526 tacagccccaaaaca-ccccatgctgcaccctgtacttctctgcaattttaagtcctgacttattagtgtaattactcgcttaacaccagctttttccatgaaacaaggagcgagattgtgtctgtgtctgtcttatccccagaatcta-catagtaCTTGGCACAGAGTAGACAATAAAAACTGACTGAGAAAACA----AAGCACA----agcacagagtatctgacacaaagaagatgcttcctacacatctgctgaaggaatgCGAACAATCTTAGCCACCTGCCCTTTCTCTCCAGCAAGATGGTAGTAAATTGGTAGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75028075 309 + 122973662 tacagccccaaaaca-ccccatgctgcaccctgtacttctctgcaattttaagtcctgacttattagtgtaattactcgcttaacaccagctttttccatgaaacaaggagagagat------tgtgtctgtcttatccccagaatcta-catagtacttggcacagagtagacaataaaaactgactgagaaaaca----aaGCACA----agcacagagtatctgacacaaagaagatgcttcctacacatctgctgaaggaatgCGAACAATCTTAGCCACCTGCCCTTTCTCTCCAGCAAGATGGTAGTAAATTGGTAGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30917142 305 + 172585720 gatagccccaaaaca-ccccatgctgcaccctgtacttctctgcaattttaagtcctgacttattagtgtaattactcgcttaacaccagcttttcccaccaaacaaggagagagat------tgtgtctgtctcatccccagaatcta-catagtacttggcacaaagtagacAACAAAA----ATTGAGAAAACA----AAGCACA----agcacagagtatctgacacaaagaagatgcttcctacatgtctgctgaaggaatgCGAACAATCTTAGTCACCTGCCTGTTCGCTCCAGCAAGATGGTAGTAAATTGGTAGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207353 305 - 170955103 gatagccccaaaaca-ccccatgctgcaccctgtacttctctgcaattttaagtcctgacttattagtgtaattactcgcttaacaccagcttttcccaccaaacaaggagagagat------tgtgtctgtctcatccccagaatcta-catagtacttggcacaaagtagacAACAAAA----ATTGAGAAAACA----AAGCACA----AGCACAGAGTATCTGACACAAAGAAGATGCTTCCTACATGTCTGCTGAAGGAATGCGAACAATCTTAGTCACCTGCCTGTTCGCTCCAGCAAGATGGTAGTAAATTGGTAGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     455942 305 +   1495729 gatagccccaaaaca-ccccatgctgcaccctgtacttctctgcaattttaagtcctgacttattagtgtaattactcgcttaacaccagctcttcccaccaaacaaggagagagat------tgtgtctgtctcatccccagaatcta-catagtactcggcacaaagtagacAACAAAA----ACTGAGAAAACA----AAGCACA----agcacagagtacctgacacaaagaagatgcttcctacatgtctgctgaaggaatgCGAACAATCTTAGTCACCTGCCCGTTCTCTCCAGCAAGATGGTAGTAAATTGGTAGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     559554 305 -    863181 gacagccccaaaaca-ccccatgctgcaccctgtacttctctgcaattttaagtcctgacttattagtgtaattacttgcttaacatcagcttttcccaccaaacaaggagagagat------tgtgtctgtctcatccccagaatcta-catagtactcggcacaaagtagacAACAAAA----ATTGAGAAAACA----AAGCACA----agcacagagtatctgacacaacgaagatgcttcctacatgtctgctgaaggaatgCGAACAATCTTAGTCACCTGCCCGTtctctccagcaagatggtagtaaattggtagag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706212 305 -  71996105 cacagccccaaaaca-ccccatgctgcaccctgtacttctctgcaattttaagtcctaacttattagtgtaattactcgcttaacaccagcttttccaaccaaacaaggagagagat------tgtgtctgtctcatccccagaatcta-catagtacttggcacaaagtagacAACAAAA----ATTGAGAAAACA----AAGCACA----AGCACAGAGTATCTGACACAAAGAAGATGCTTCCTACATGTCTGCTGAAGGAATGCGAACAATCTTAGTCACCTGCCCGTTCTCTCCAGCAAGATGGTAGTAAATTGGTAGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     442840 305 -    735854 gacagccccaaaaca-ccccatgctgcaccctgtacttctctgcaattttaagtcctgacttattagtgtaattacttgcttaacatcagcttttcccaccaaacaaggagagagat------tgtgtctgtctcatccccagaatcta-catagtactcggcacaaagtagacAACAAAA----ATTGAGAAAACA----AAGCACA----agcacagagtatctgacacaaagaagatgcttcctacatgtctgctgaaggaatgCGAACAATCTTAGTCACCTGCCCGTtctctccagcaagatggtagtaaattggtagag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     355921 305 -   1829203 gacagccccaaaaca-ccccatgctgcaccctgtacttctctgcaattttaagtcctgacttattagtgtaattactcgcttaacaccagcttttcccaccaaacaaggagagagac------tgtgtctgtctcatccccagaatcta-catagtacttggcacaaagcagacAACAAAA----ATTGAGAAAACA----AAGCACA----agcacagagtatctgacacaaagaagatgcttcctacatgtctgctgaaggaatgTGAACAATCTTAGTCACCTACCCGTtctctccagcaagatggtagtaaattggtagag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30537662 306 + 171630274 tacagccccaaaaca-ccccatgctgcaccctgtacttctctgtaattttaagtcctgacttattagtataattactcgcttaacaccagcttttcccaccaaacaaggagagagat------tgtgtctgtcttatccccagaatcta-catagtacttggcacaaagtagac---AAAAATTGGCTGAGAAAACA----AAGCACA----AGCACAGAGTATCTGACACAAAGAAGACACTTCCTACAGGTCTGCTGAAGGAATGCAAACCATCTCAGCCACGTGCCCTTTCTCTCCAGCAAGATGGTAGTAAATTAGTAGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           342002 302 +    515838 TACAGCCCGAAAGCA-CCCCATGCTGCACCCTGTACTTCTCTGTAATTTTAAGTCCTGACTTATTAGCATAATTACTCACTTAACACCAGCTTTTCCCACCGAACAAG----GAGAT------TGTGTCTGTCTTATCCCCAGAATCTA-CATAGTACTTGGCACAAAGTAGAC---AAAAATTGGCTGAGAAAACA----AAGCACA----AGCACAGAGTATCTGACACAAAGAAGACACTTCCTACATGTCTGCTGAAGGAATGCAAACAATCTTAGCCACCTGCCCTTTCGCTCCAGCAAGATGGTAGTAAATTAGTAGAG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     971204 307 -   1771730 tacagcccgaaaacacccccatgctgcaccctgtacttctctgtaattttaagtcctgacttattagtataattactcgcttaacaccagcttttcccaccaaacaaggagagagat------tgtgtctgccttatccccagaatctg-catagtacttggcacaaagtagac---AAAAATTGGCTGAGAAAACA----AAGCACG----AGCACAGAGTATCTGTCACAAAGAAGACACTTCCTACGTGTCTGCTGAAGGAATGCAAACAATCGTAGCCACCTGCCCTTTCTCTCCAGCAAGATGGCAGTAAATTAGTAGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     155974 305 -    486031 tacagccccaaaaca-ccccatgctgcaccctgtactcctctgtaattttaagtcctgacttattagtataattactcgcttaacaccagcttttcccaccaaacaaggagagagat------tgt-tctgtcttatccccagaatcta-catagtacttggcacaaagtagac---aaaaattggctgagaaaacg----aaGCACA----agcacagagtatctgacacaaagaagacacttcctacatgtctgctgaaggaatgCAAACAGTCTTAGCCACCTGCCCTTTCTCTCCAGCAAGATGGTAGTAAATTAGTAGAG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     402031 298 -   1411461 tacagccccaaagca-ccccagccggcaccctgtacttctctgcagttataagtcct---------gattaattacttgcttaacaccagcttttcccagcaaacaaagacagagac------tgtgtctgtc-tttccccagaatctagcacaatacttggcacacagtagacaataaaaattgactggagaaacaaatGAAGCACA----AGCATGGAGTATCTGCTGCAAA---GATGCTTCCTAAATGTCTGTTGATGGAATGCTAGCAATCTTAGCCACTtgtccttcctctccagcaagatggc---aaattactagag
i proCoq1.NW_012149775v1   I 429 C 0
s otoGar3.GL873550           400228 302 +  18854210 tacattcccaaagca-ccccaccc--caaccggtacttctccgcacttatgagtcctcaattactagtataattactcacttaagacccgcttttcccaccaaatgagaacagtgac------tgtgtct----tatgcccagaatgtagcacaatatttggcaaagagcagacagtaaaaattggtttagtaaacaaatAAAACACA----GACACAGAATACTCAATGCAAAGACGATGCTTCCTAGATTTC---TGAAGGAATGCAAGCAACCTTAGCCACTTGTCTTTTCTCTCCAGCAAGATGGC---AAATTACTAGAG
i otoGar3.GL873550         I 1 I 294
s canFam3.chr35            26401120 280 +  26524999 ----cacccaaagta-ccccacactgctcc-------tctctgca-ccccgagtcctggctaagtcatgtaatcagctgttgaacaccagctctttctgtcacatttgcacagagac------tgtgtctgccttatccccagagcccagcacagcatctggcacaggggag-tgataaacatgggctaaaggaGGT----AAAAACAGGACAGGACTGAGCACCTGAAGCACCCAGAGGGCTTCCTACATGTCGGCTGA--------------TCCTCGGCACGTGTCCTATCT-------GACACAGTGGTCAGTTACTAGGG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               446987 731 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I

a score=15561.000000
s hg38.chr6_GL000254v2_alt  1552275 1 +   4827813 A
s panTro5.chr6             30421365 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655576 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     364364 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75028384 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30917447 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207658 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     456247 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     559859 1 -    863181 a
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706517 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     443145 1 -    735854 a
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     356226 1 -   1829203 a
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30537968 1 + 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           342304 1 +    515838 A
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     971511 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     156279 1 -    486031 A
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     402329 1 -   1411461 a
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           400824 1 +  18854210 A
i otoGar3.GL873550         I 294 C 0
s canFam3.chr35            26401400 1 +  26524999 A
i canFam3.chr35            C 0 C 0
e micMur3.chr6               446987 731 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I

a score=811782.000000
s hg38.chr6_GL000254v2_alt  1552276  57 +   4827813 GAGAAGCAATTTC-----------------------------------------------------------------------------------------------TTCATATTCCCTGTAGCAGCAAGAACAGTGGGCTGCACGTCACC--
s panTro5.chr6             30421366  57 + 175400573 GAGAAGCAATTTC-----------------------------------------------------------------------------------------------TTCATATTCCCTGTAGCAGCAAGAACAGTGGGCTGCACGTCACC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655577  57 + 173848474 GAGAAGCAATTTC-----------------------------------------------------------------------------------------------TTCATATTCCCTGTAGCAGCAAGGACAGTGGGCTGCACGTCACC--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     364365  57 +   2037526 GAGAAGCAATTTC-----------------------------------------------------------------------------------------------TTCATATTCCCTGTAGCAGCAAGAACAGTGGGCTGCACGTCACC--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75028385  57 + 122973662 GAGAAGCAATTTC-----------------------------------------------------------------------------------------------TTCATATTCCCTGTAGCAGCAAGAACAGTAGGCTGCACGTCACC--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30917448  57 + 172585720 GAGAAGCAatttc-----------------------------------------------------------------------------------------------tttgtattccctgtagcagcaagaacagtgggctgcacGTCACC--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207659  57 - 170955103 GAGAAGCAATTTC-----------------------------------------------------------------------------------------------TTTGTATTCCCTGTAGCAGCAAGAACAGTGGGCTGCACGTCACC--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     456248  57 +   1495729 GAGAAGCAATTTC-----------------------------------------------------------------------------------------------TTTGTATTCCCTGTAGCAGCAAGAACAGTGGGCTGCACGTCACC--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     559860  57 -    863181 gagaagcaatttc-----------------------------------------------------------------------------------------------tttgtattccctgtagcagcaagaacagtgggctgcacGTCACC--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706518  57 -  71996105 GAGAAGCAATTTC-----------------------------------------------------------------------------------------------TTTGTATTCCCTGTAGCAGCAAGAACAGTGGGCTGCACGTCACC--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     443146  57 -    735854 gagaagcaatttc-----------------------------------------------------------------------------------------------tttgtattccctgtagcagcaagaacagtgggctgcacGTCACC--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     356227  57 -   1829203 gagaagcaatttc-----------------------------------------------------------------------------------------------tttgtattccctgtagcagcaagaacagtgggctgcacGTCACC--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30537969  57 + 171630274 GAGAAGCAATTTC-----------------------------------------------------------------------------------------------TTCACATTCCCTGTAGCAGCAAGAACAGTGGGCTGCATGTCCCC--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           342305  57 +    515838 GAGAAGCAATTTC-----------------------------------------------------------------------------------------------TTCATATTCCCTGTAGCAGCAAGAACAGTGGGCTGCACGTCCCC--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     971512 152 -   1771730 GAGAAGCAAtttcttttttttttttttttgagacggagtttcgctcttgttacccaggctggagtgcaatggcgcgatctcggctcaccgcaacctccgcctcctgggttcaTATTCCCTGTAGCAGCAAGAACAGTGGGCTGCATGTCCCC--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     156280  57 -    486031 GGGAAGCAATTTC-----------------------------------------------------------------------------------------------TTCATATTCCCTGTAGCAGCAAGAACAGTGGGCTGCATGTCCCC--
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               447718  57 + 123392446 GAGAAGCGATTTC-----------------------------------------------------------------------------------------------TTTACATTCCCCGTAGCAGCAAGAACAGTGGGCTGTACGTCACC--
i micMur3.chr6             I 731 I 24
s proCoq1.NW_012149775v1     402330  55 -   1411461 --gaagcaatttc-----------------------------------------------------------------------------------------------tttacattccctgtagcagcaagaacagtgGGCTGTATGTCACC--
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           400825  57 +  18854210 GAGAAGTAATTTC-----------------------------------------------------------------------------------------------TTTATACTTCCTGTAGCAGCAGGAACAGTGGGCTGTACATCATC--
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26401401  56 +  26524999 GAGAAGCGATTTC-----------------------------------------------------------------------------------------------TCC---TGCCCCCAAGCAGCACCAACGGCTAGCTGCATATCATGTC
i canFam3.chr35            C 0 C 0
e mm10.chr17               58142990 3735 -  94987271 I

a score=252167.000000
s hg38.chr6_GL000254v2_alt  1552333 25 +   4827813 --------AGCAAATCATCGTATCCA-AGGTTTC
s panTro5.chr6             30421423 25 + 175400573 --------AGCAAATCATCGTATCCA-AGGTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655634 25 + 173848474 --------AGCAAATCATCGTATCCA-AGGTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     364422 25 +   2037526 --------AGCAAATCATCGTATCCA-AGGTTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75028442 25 + 122973662 --------ATCAAATCATCGTATCCA-AGGTTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30917505 25 + 172585720 --------ATCAAATCATCGTATTCA-AGGTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207716 25 - 170955103 --------ATCAAATCATCGTATTCA-AGGTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     456305 25 +   1495729 --------ATCAAATCATCGTATTCA-AGGTTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     559917 25 -    863181 --------ATCAAATCATCGTATTCA-AGGTTTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706575 25 -  71996105 --------ATCAAATCATCGTATTCA-AGGTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     443203 25 -    735854 --------ATCAAATCATCGTATTCA-AGGTTTC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     356284 25 -   1829203 --------ATCAAATCATCGTATTCA-AGGTTTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30538026 25 + 171630274 --------ATCAAGTCATTGTATCCA-AGGTTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           342362 25 +    515838 --------ATCAAGTCATTGTTTCCA-AGGTTTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     971664 25 -   1771730 --------ATCAAGTCATTGTTTCCA-AGGTTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     156337 25 -    486031 --------ATCAAGTCATTGTATCCA-AGGTTTT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     402385 25 -   1411461 --------CTCAGGGCACCGGAACCC-TGGCTTG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           400882 26 +  18854210 --------CTCAGGGCACCATGACCCAAGGCTTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26401457 33 +  26524999 AGCCACTCTACACCTTCCTGTACCCA-GGGTTTG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               447775 24 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I

a score=849756.000000
s hg38.chr6_GL000254v2_alt  1552358 64 +   4827813 GCTCCAGCAACTTACAGAAACCA--GGAGAAGAAAAAGCTGTGTCTGAGAAAATGGTTGTTGTGGA
s panTro5.chr6             30421448 64 + 175400573 GCTCCAGGAACTTACAGAAACCA--GGAGAAGAAAAAGCTGTGTCTGAGAAAATGGTTGTTGTGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655659 64 + 173848474 GCTCCAGGAACTTACAGAAACCA--GGAGAAGAAAAAGCTGTGTCTGAGAAAATGGTTGTTGTGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     364447 64 +   2037526 GCTCCAGGAACTTACAGAAACCA--GGAGAAGAAAAAGCTGTGTCTGAGAAAATGGTTGTTGTGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75028467 64 + 122973662 GCTCCAGGAACTTACAGAAACCA--GGAGAAGAAAAAGCTGTGTCTGAGAAAATGGTTGTTGTGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30917530 64 + 172585720 GCTCCAGGAACTTACAGAAACCA--GGAGAAGAAAAAGCTGTGTCTGAGAAAATGGTTGTGGTGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207741 64 - 170955103 GCTCCAGGAACTTACAGAAACCA--GGAGAAGAAAAAGCTGTGTCTGAGAAAATGGTTGTGGTGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     456330 61 +   1495729 GCTCCAGGAACTTACAGAAACC-----AGAAGAAAAAGCTGTGTCTGAGAAAATGGTTGTGGTGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     559942 64 -    863181 GTTCCAGGAACTTACAGAAACCA--GGAGAAGAAAAAGCTGTGTCTGAGAAAATGGTTGCGGTGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706600 64 -  71996105 GCTCCAGGAACTTACAGAAACCA--AGAGAAGAAAAAGCTGTGTCTGAGAAAATGGTTGTGGTGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     443228 64 -    735854 GTTCCAGGAACTTACAGAAACCA--GGAGAAGAAAAAGCTGTGTCTGAGAAAATGGTTGTGGTGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     356309 64 -   1829203 GCTCCAGGAACTTACAGAAACCA--GGAGAAGAAAAAGCTGTGTCTGAGAAAATGGTTGTTGTGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30538051 61 + 171630274 ACTCCAGGAACTTACAGAAACC-----AGAAGAAAAAGCTGTGTCTGAGAAAATGGCTGTTGTGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           342387 61 +    515838 GCTCCAGGAACTTACAGAAACC-----AGAAGAAAAAGCTATGTCTGAGAAAATGGCTGTTCTGGA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     971689 61 -   1771730 GCTCCAGGAACTTACAGAAACC-----AGAAGAAAAAGCTGTGTCTGAGAAAATGGCTGTTGTGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     156362 61 -    486031 GTTCCAGGAACTTACAGAAACC-----AGAAGAAAAAGCTGTGTCTGAGAAAATGGCTGTTGTGGA
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               447799 66 + 123392446 GCTCTAGGAACTGACAGAAACCAAGGGAGGAGGAAAAGCTGTGTCCGAGAAGATGGCTGTTGTGGA
i micMur3.chr6             I 24 I 8769
s proCoq1.NW_012149775v1     402410 66 -   1411461 GCTCTAGAAACTTACAGAAACCAAGGGAGGAGGAAAAGCTGTGTCTGTGAAGATGGTTGTTGTGGA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           400908 62 +  18854210 ACTCTAGGAACTTATAAAAACCAAGAGGGAAGAAAAGGCTGTGTCTGA-AAGATG---GTTGTGGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26401490 63 +  26524999 GCCCCAGGCAC--ATGGACGCTGGGGTGGGAGGCAGGGCTGGGTCTCAGGGAGTGGCTGCTGTGG-
i canFam3.chr35            C 0 C 0
e mm10.chr17               58142990 3735 -  94987271 I

a score=743736.000000
s hg38.chr6_GL000254v2_alt  1552422 58 +   4827813 GTAAATTGTAATAGtgagaatcactccttcccttttctttagttttagacctaggtat--
s panTro5.chr6             30421512 58 + 175400573 GTAAATTGTAATAGtgagaatcactccttcccttttctttagttttagacctaggtat--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655723 58 + 173848474 GTAAATTGTAATAGtgagaatcactccttcccttttctttagttttagacctaggtat--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     364511 58 +   2037526 GTAAATTGTAATAGtgagaatcactccttcccttttctttagttttagacctaggtat--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75028531 58 + 122973662 GTAAATTGTAATAGtgagaatcactccttcccttttctttagtttcagacctaggtat--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30917594 58 + 172585720 GTAAGTTGTAACAGtgagaatcactccttcccttttctttagttttagacctaggtat--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207805 58 - 170955103 GTAAGTTGTAACAGTGAGaatcactccttcccttttctttagttttagacctaggtat--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     456391 58 +   1495729 GTAAGTTGTAATAGTGAGaatcactccttcccttttctttagttttagacctaggtat--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     560006 58 -    863181 GTAAGTTGTAATAGtgagaatcactccttcccttttctttagttttagacctaggtat--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706664 58 -  71996105 GTAAGTTGTAATAGtgagaatcactccttcccttttctttagttttagacctaggtag--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     443292 58 -    735854 GTAAGTTGTAATAGtgagaatcactccttcccttttctttagttttagacctaggtat--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     356373 58 -   1829203 GTAAGTTGTAATAGtgagaatcactccttcccttttctttagttttagacgtaggtat--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30538112 58 + 171630274 GGAAGTTATAATAGTTAGaatcattccttcccttttctttagttttagacctagctat--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           342448 58 +    515838 GGAAGTTATAATAGTAAGaatcactccttcccttttctttagttttagacctaggtat--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     971750 58 -   1771730 GGAAGCTATAATAGTAAGAATCACTCCTTCCCTTTTCTTTAGTTTTAGACCTCCATAT--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     156423 58 -    486031 GGAAGTTATAATAGTAAGaatcattccttcccttttctttagttttagacctaggtat--
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     402476 58 -   1411461 ATAAGCTAATATGatgaaaatcactccttcccttttctttagttttagacctgggtat--
i proCoq1.NW_012149775v1   C 0 I 791
s otoGar3.GL873550           400970 58 +  18854210 ATAAGTTATAATGGtgataatcacttcttcccttttctttagttttagacctaggtat--
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26401553 55 +  26524999 --CAAATGTCACAATGGGGATCGTCCCTGCC---TCCCCTCACTCTACACCCAGGTAGGT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               447865 8769 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I

a score=416820.000000
s hg38.chr6_GL000254v2_alt  1552480 35 +   4827813 acaccccata---aacagagtttattttctcaggtttt
s panTro5.chr6             30421570 38 + 175400573 acaccccataaacaacagagtttattttctcaggtttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655781 38 + 173848474 acaccccataaacaacagagtttattttctcaggtttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     364569 38 +   2037526 acaccccataaacaacagagtttattttctcaggtttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75028589 36 + 122973662 acaccccataaaca--agagtttattttctcaggtttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30917652 38 + 172585720 ataccccataaacgacagagtttattttctcaggtttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207863 38 - 170955103 ataccccataaacgacagagtttattttctcaggtttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     456449 38 +   1495729 ataccccataaacgacagagtttattttctcaggtttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     560064 38 -    863181 acaccccataaacgacagagtttattttctcaggtttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706722 38 -  71996105 ataccccataaacgacagagtttattttctcaggtttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     443350 38 -    735854 acaccccataaatgacagagtttattttctcaggtttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     356431 36 -   1829203 acaccccataaacgac--agtttattttctcaggtttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30538170 38 + 171630274 gcaccccagaaacaacagagtttattttctctggtttt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           342506 38 +    515838 acaccccagaaacaacagagtttattttctcaagtttt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     971808 38 -   1771730 ACACCCCAGAAACAACAGAGTTTATTTTCTCAGGTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     156481 38 -    486031 acaccccagaaacaacagagtttattttctcaggtttt
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           401028 37 +  18854210 aca-tccataaataatatagtttattttttcaggtttt
i otoGar3.GL873550         C 0 I 687
s canFam3.chr35            26401608 34 +  26524999 ATGCCTTCAAAACA----AGTTTCttttccctggtttt
i canFam3.chr35            C 0 C 0
e micMur3.chr6               447865 8769 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     402534 791 -   1411461 I

a score=68180.000000
s hg38.chr6_GL000254v2_alt  1552515 12 +   4827813 gagcctca----aatg
s panTro5.chr6             30421608 12 + 175400573 gagcctca----aatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655819 12 + 173848474 gagcctca----aatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     364607 12 +   2037526 gagcctcg----aatg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75028625 12 + 122973662 gagcctca----aatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30917690 12 + 172585720 gagcctct----agtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207901 12 - 170955103 gagcctct----agtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     456487 12 +   1495729 gagcctct----aatg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     560102 12 -    863181 gagcctct----aatg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706760 12 -  71996105 gagcctct----aatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     443388 12 -    735854 gagcctct----aatg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     356467 12 -   1829203 gagcctct----aatg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30538208  8 + 171630274 gagccttg--------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           342544  8 +    515838 gagcctca--------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     971846  8 -   1771730 GAGCCTCA--------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     156519 12 -    486031 gagcctcaaatg----
i aotNan1.NW_018496901v1   C 0 I 80
s canFam3.chr35            26401642 12 +  26524999 cagcttca----cgtg
i canFam3.chr35            C 0 C 0
e micMur3.chr6               447865 8769 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     402534 791 -   1411461 I
e otoGar3.GL873550           401065 687 +  18854210 I

a score=202061.000000
s hg38.chr6_GL000254v2_alt  1552527 52 +   4827813 aatggaattttttt--cc--tttttttttttttttt-gcatgta-----t-----ttgggtgggggg
s panTro5.chr6             30421620 51 + 175400573 aatggaattttttt--cc---ttttttttttttttt-gcatgta-----t-----ttgggtgggggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655831 51 + 173848474 aatggaaatttttt--cc---ttttttttttttttt-gcatgta-----t-----ttgggtgggggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     364619 44 +   2037526 aatggaattttttc--ct---------ttttttttt-gcatgta-----t-----ttgggt-ggggg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75028637 41 + 122973662 aatggaattttttt--cc---------atttttttt-gcatgta-----t-----ttg----ggggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30917702 50 + 172585720 aatggaatttttccattt--------tttttttttt-gcatgta-ttttt-----ttggg--ggggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207913 48 - 170955103 aatggaatttttcc--tt--------tttttttttt-gcatgta-ttttt-----ttggg--ggggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     456499 50 +   1495729 aatggaatttttcc--tt--------ttttttttttggcatgtatttttt-----ttggg--ggggg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     560114 47 -    863181 aatggaatttttcc---a--------tttttttttt-gcatgta-ttttt-----tttgg--ggggg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706772 46 -  71996105 aatggaatttttcc--a---------tttttttttt-gcatgta--tttt-----ttggg--ggggg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     443400 48 -    735854 aatggaatttttcc--at--------tttttttttt-gcatgta-ttttt-----ttggg--ggggg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     356479 48 -   1829203 aatggaattttttc---c--------tttttttttt-gcgtgtttttttt-----tgggg--ggggg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30538216 52 + 171630274 aatggaattttttt--cc---------ttttttgtg-gcatgta-ttcttccagggtggg--ggggg
i calJac3.chr4             C 0 I 10
s saiBol1.JH378341           342552 59 +    515838 aatggatttttttt--cctttttttttttttttttg-gcatgta-tttttcca--gtggt--ggggg
i saiBol1.JH378341         C 0 I 11
s cebCap1.NW_016107755v1     971854 56 -   1771730 AATGGAAttttttt--cc---ttttttttttttttG-GCATGTA-TTTTTCCA--GCGGC--AGGGG
i cebCap1.NW_016107755v1   C 0 I 24
s canFam3.chr35            26401654 37 +  26524999 gacggaaccctact--gc----------atttttct-gcaggga-----t-----gcaca-------
i canFam3.chr35            C 0 C 0
e micMur3.chr6               447865 8769 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     402534 791 -   1411461 I
e otoGar3.GL873550           401065 687 +  18854210 I
e aotNan1.NW_018496901v1     156531 80 -    486031 I

a score=99097.000000
s hg38.chr6_GL000254v2_alt  1552579 15 +   4827813 ctgtcaa---catgtttg
s panTro5.chr6             30421671 15 + 175400573 ctgtcaa---catgtttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655882 15 + 173848474 ctgtcaa---catgtttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     364663 15 +   2037526 ctgtcaa---catgtttg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75028678 18 + 122973662 ctgtcaacatcatgtttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30917752 15 + 172585720 ctgtcaa---catgtttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207961 15 - 170955103 ctgtcaa---catgtttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     456549 15 +   1495729 ctgtcaa---catgtttg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     560161 15 -    863181 ctgtcaa---catgtttg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706818 15 -  71996105 ctgtcaa---catgtttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     443448 15 -    735854 ctgtcaa---catgtttg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     356527 15 -   1829203 ctgtcaa---catgtttg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30538278 14 + 171630274 ctgtcga---catgttt-
i calJac3.chr4             I 10 C 0
s saiBol1.JH378341           342622 12 +    515838 ctg--at---catgttt-
i saiBol1.JH378341         I 11 C 0
s canFam3.chr35            26401691 15 +  26524999 ---tcaacatcatgcttc
i canFam3.chr35            C 0 C 0
e micMur3.chr6               447865 8769 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     402534 791 -   1411461 I
e otoGar3.GL873550           401065 687 +  18854210 I
e aotNan1.NW_018496901v1     156531 80 -    486031 I
e cebCap1.NW_016107755v1     971910 24 -   1771730 I

a score=10920.000000
s hg38.chr6_GL000254v2_alt  1552594 1 +   4827813 t
s panTro5.chr6             30421686 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655897 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     364678 1 +   2037526 t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75028696 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30917767 1 + 172585720 t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207976 1 - 170955103 t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     456564 1 +   1495729 t
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     560176 1 -    863181 t
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706833 1 -  71996105 t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     443463 1 -    735854 t
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     356542 1 -   1829203 t
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30538292 1 + 171630274 t
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           342634 1 +    515838 t
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496901v1     156611 1 -    486031 t
i aotNan1.NW_018496901v1   I 80 C 0
s canFam3.chr35            26401706 1 +  26524999 t
i canFam3.chr35            C 0 C 0
e micMur3.chr6               447865 8769 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     402534 791 -   1411461 I
e otoGar3.GL873550           401065 687 +  18854210 I
e cebCap1.NW_016107755v1     971910 24 -   1771730 I

a score=384297.000000
s hg38.chr6_GL000254v2_alt  1552595 39 +   4827813 gaggctcatccatgtgattatgagctgatttta-cttaat--
s panTro5.chr6             30421687 39 + 175400573 aaggctcatccatgtgattatgagctgatttta-cttaat--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655898 39 + 173848474 aaggctcatccatgtgattatgagctgatttta-cttaat--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     364679 39 +   2037526 gaggctcattcatgtgattatgagctgatttta-tttaat--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75028697 39 + 122973662 gaggcccattcatgtgattatgagctgatttta-tttaat--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30917768 39 + 172585720 gaggctcattcatgtgatcatgagctgatttta-tttaat--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30207977 39 - 170955103 gaggctcattcatgtgatcatgagctgatttta-tttaat--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     456565 39 +   1495729 gaggctcattcatgtgatcatgagctgatttta-tttaat--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     560177 39 -    863181 gaggctcattcatgtgatcatgagctgatttta-tttaat--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706834 39 -  71996105 gaggctcattcatgtgatcacgagctgatttta-tttaat--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     443464 39 -    735854 gaggctcattcatgtgatcatgagctgatttta-tttaat--
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     356543 39 -   1829203 gaggctcattcgtgtgattataagctgatttta-tttaat--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30538293 40 + 171630274 aagcctcattcatattattacaagctgattttattttaat--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           342635 39 +    515838 aaggctcattcatattattataagctgatttta-tttaat--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     971934 40 -   1771730 AAGGCTCATTCATATTATTATAAGCTGATTTTATTTTAAT--
i cebCap1.NW_016107755v1   I 24 C 0
s aotNan1.NW_018496901v1     156612 40 -    486031 aaggctcattcatattattataagctgattttattttaat--
i aotNan1.NW_018496901v1   C 0 C 0
s canFam3.chr35            26401707 41 +  26524999 gaggttccttcctgtgacgatgagcagattttg-ttcattct
i canFam3.chr35            C 0 C 0
e micMur3.chr6               447865 8769 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     402534 791 -   1411461 I
e otoGar3.GL873550           401065 687 +  18854210 I

a score=214207.000000
s hg38.chr6_GL000254v2_alt  1552634 25 +   4827813 tgctgctctctaacta-tacaatt-tt
s panTro5.chr6             30421726 25 + 175400573 tgctgctctctaacta-tacaatt-tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655937 25 + 173848474 tgctgctctctaacta-tacaatt-tt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     364718 25 +   2037526 tgctgctctgtaacta-tacaatt-tt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75028736 25 + 122973662 tgctgctctgtaacta-tacaatt-tt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30917807 25 + 172585720 tgctgctctgtagcta-tataatt-tt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30208016 25 - 170955103 tgctgctctgtagcta-tataatt-tt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     456604 25 +   1495729 tgctgctctgtagcta-tataatt-tt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     560216 25 -    863181 tgctgctctgtagcta-tataatt-tt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706873 25 -  71996105 tgctgctctgtagcta-tataatt-tt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     443503 25 -    735854 tgctgctctgtagcta-tataatt-tt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     356582 25 -   1829203 tgctgctctgtagcta-tacaatt-tt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30538333 21 + 171630274 tgctgctctg----ac-tacaatt-tt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           342674 21 +    515838 tgctgctctg----at-tacaatt-tt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     971974 21 -   1771730 TGCTACTCTG----ac-tacaatt-tt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     156652 21 -    486031 tgctgctctg----ac-tacaatt-tt
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           401752 27 +  18854210 tgctcttctataactgttatgattctt
i otoGar3.GL873550         I 687 C 0
s canFam3.chr35            26401748 25 +  26524999 tattgctctctgacta-tatcatt-ct
i canFam3.chr35            C 0 I 441
e micMur3.chr6               447865 8769 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     402534 791 -   1411461 I

a score=105120.000000
s hg38.chr6_GL000254v2_alt  1552659  9 +   4827813 taatgcagt---
s panTro5.chr6             30421751  9 + 175400573 taatgcagt---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655962  9 + 173848474 taatgcagt---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     364743  9 +   2037526 taatgcagt---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75028761  9 + 122973662 taatgcagt---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30917832  9 + 172585720 taatgcagt---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30208041  9 - 170955103 taatgcagt---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     456629  9 +   1495729 taatgcagt---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     560241  9 -    863181 taatgcagt---
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29706898  9 -  71996105 taatgcagt---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     443528  9 -    735854 taatgcagt---
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     356607  9 -   1829203 taatgcagt---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30538354  9 + 171630274 taatgcagt---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           342695  9 +    515838 taatgcagt---
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     971995  9 -   1771730 taatgcagt---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     156673  9 -    486031 taatgcagt---
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           401779 12 +  18854210 taatgtagtata
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               447865 8769 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     402534 791 -   1411461 I
e canFam3.chr35            26401773 441 +  26524999 I

a score=2845786.000000
s hg38.chr6_GL000254v2_alt  1552668 275 +   4827813 c-tactgatagccatatgagttgtttccagtttgggacaattacaaacactgcttcagtgaatatttctgcatacatgttctagcacacacaggc---aagatgtaccctcaatttgacta-agcaggccaaactgtttccaaagtgactatagtgctatgtagtctgctcagcaggctatgagcactcatgatgccccacagcctcaccaacacctgataatatcagcttt--aat--ttttgccactctggaggatgggatataga--------ata----tctgtgtgtgtgt
s panTro5.chr6             30421760 260 + 175400573 c-tactgatagccatatgagttgtttccagtttgggacaattacaaacactgcttcagtgaatatttctgcatacatgttctagcacacacaggc---aagatgtaccctcaatttgacta-agcaggccaaactgtttccaaattgactgtagtgctatgtagtctgctcagcaggctatgagcactcatgatgccccacagcctcaccaacacctgataatatcagcttt--aat--ttttgccactctggaggatgGGATATAGA--------A-------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30655971 260 + 173848474 c-tactgatagccatatgagttgtttccagtttgggacaattacaaacactgcttcagtgaatatttctgcatacatgttctagcacacacaggc---aagatgtaccctcaatttgacta-agcaggccaaactgtttccaaattgactgtagtgctatgtagtctgctcagcaggctatgagcactcatgatgccccacagcctcaccaacacctgataatatcagcttt--aat--ttttgccactctggaggatgGGATATAGA--------A-------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     364752 275 +   2037526 c-tactgatagccatatgagttgtttccagtttgggacaattacaaacactgcttcagtgaatatttctgcatacatgttctagcacacacaggc---aagatgtaccctcaatttgacta-agcaggccaaactgtttccaaagtgactgtagtgctatgtagtctgcccagcaggctatgagcactcatgatgccccacagcctcaccaacacctgataatatcagcttt--aat--ttttgccactctggaggatgGGATATAGA--------ATG----TGTGTGTGCGCGC
i gorGor5.CYUI01015528v1   C 0 I 15
s nomLeu3.chr1a            75028770 261 + 122973662 c-tactgatagccatatgagttgtttccagtttgggacaattacaaacactgcttcagtgaatatttctgcatacatgttctagcacacacaggc---aagatgtaccctcaatttgacta-agcaggccaaactgtttccaaagtgactatagggctaagtagtctgcccagcaggctacgagcactcatgctgccccacagcctcaccaacacctgataatatcagcttt--aat--ttttgccactctggaggatgggatataga--------at------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30917841 273 + 172585720 c-tactgatagccatatgagttgtttccagtttgggacaatgacaaacactgcttctgtgaatatttctgcatacatgtcctagcacacacaggt---aagatgtatcctcagtttgacta-atcaggtcaaactgtttccaaagtgactgtagtgctgtgtagtctgcccagcaggctacgagcactcatgctgccccacagcctcaccaacacctgatattatcagcttt--aat--ttttgccactctggaggatgGGATATAGA--------ATA----TGGgtgtgtgt--
i rheMac8.chr4             C 0 I 2
s macFas5.chr4             30208050 273 - 170955103 c-tactgatagccatatgagttgtttccagtttgagacaatgacaaacactgcttctgtgaatatttctgcatacatgtcctagcacacacaggt---aagatgtatcctcagtttgacta-atcaggtcaaactgtttccaaagtgactgtagtgctgtgtagtctgcccagcaggctacgagcactcatgctgccccacagcctcaccaacacctgatattatcagcttt--aat--ttttgccactctggaggatgggatataga--------ata----tgggtgtgtgt--
i macFas5.chr4             C 0 I 2
s macNem1.NW_012012100v1     456638 272 +   1495729 cttactgatagccg-atgagttg-ttccag-ttgagacaatgacaaacactgcttctgtgaatatttctgcatacatgtcctagcacacacaggt---aagatgtatcctcagtttgacta-atcaggtcaaactgtttccaaagtgactgtagtgctgtgtagtctgcccagcaggctacgagcactcatgctgccccacag-ctcaccaacacctgatattatcagcttt--aat--ttttgccactctggaggatgggatataga--------ata----tgggtgtttGTGg
i macNem1.NW_012012100v1   C 0 I 4
s cerAty1.NW_012002535v1     560250 273 -    863181 c-tactgatagccatatgagttgtttccagtttgagacaatgacaaacactgcttctgtgaatatttctgcatacatgtcctagcacacacaggt---aagatgtatcctcagtttgacta-atcaggtcaaactgtttccaaagtgactgtagtgctgtgtagtctgcccagcaggctatgagcactcatgctgccccacagcctcaccaacacctgatattatcagcttt--aat--ttttgccactctggaggatgggatgtagA--------ATA----TGGGGgtgtgt--
i cerAty1.NW_012002535v1   C 0 I 2
s chlSab2.chr17            29706907 267 -  71996105 c-tactgatagccatatgagttgtttctagtttgagacaatgacaaacactgcttctgtgaatatttctgcatacatgtcctagcacacacaggt---aagatgtatcctcagtttgacta-ctcaggtcaaactgtttccaaagtgactgtagtgctgtgcagtctgcccagcaggctacgagcactcatgctgccccacagcctcaccaacacctgatattatcagcttt--aat--ttttgccactctggaggatgGGATATAGA--------ATA----TAGGG--------
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012107142v1     443537 267 -    735854 c-tactgatagccatatgagttgtttccagtttgagacaatgacaagcactgcttctgtgaatatttctgcatacatgtcctagcacacacaggt---aagatgtatcctcagtttgacta-atcaggtcaaactgtttccaaagtgactgtagtgctgtgtagtctgcccagcaggctacgagcactcatgctgccccacagcctcaccaacacctgatattatcagcttt--aat--ttttgccactctggaggatgGGATATAGA--------ATA----TGGGA--------
i manLeu1.NW_012107142v1   C 0 I 2
s colAng1.NW_012115577v1     356616 273 -   1829203 c-tactgatagccatatgagttgtttccagtttaggacaatgacaaacactgcttctgtgaatatttctgcatacatgtcctagcacacataggt---aagatgtatcctcagtttgacta-atcaggtcaaactgtttccaaagtgactgtagtgctgtgtagtctgcccagcaggctacgagcactcatgctgccccacagcctcagcaacacctgatattaccagcttt--aat--ttttgccactctggaggatgGGATATAGA--------atg----tgtgtgtatgt--
i colAng1.NW_012115577v1   C 0 I 2
s calJac3.chr4             30538363 265 + 171630274 c-tactgatagccatataagttgtttccagtttggaacaattacaaacactacttccatgaatatttctgcacacacgtcctagtacacacaggc---aagatgaattctcaatttgacta-atcaggccaaactgtttccaaagtgactatactgttgtgcagtctgcccagcaggctatgagcactcatgctgccccacagcctcaccaacacctggtattaccagcttt--aat--ttttgccactctggaggatgGGATATAGA--------gtg----tga----------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           342704 257 +    515838 c-tactgatagccatataagttgtttccagtttgagacaattacaaacactacttccatgaatatttctgcacacacgtcctagcacacacaggc---aagatgaatcctcaatttgacta-atcaggccaaactgtttccaaagtgactatactgttgcgcagtctgcccagcaggctatgagcactcatgctgccccacagcctcaccaacacctggtattatcagcttt--aat--ttttgccactctggaggatgGCATATA------------------------------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     972004 258 -   1771730 c-tactgatagccatataagttgttccc-gtttgggacaattacaaacactacttccatgaatatttctgcacacacatcctagcacacacaggc---aagatgaatcctcaatttgacta-atcaggccaaactgtttccaaagtgactatactgttgtgcagtctgcccagcaggctatgagcactcatgctgccccacagccccaccaacacctggtattatcagcttt--aat--ttttgccactctggaggatgGGGgagaga----------------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     156682 265 -    486031 c-tactgatagccatataagttgtttccagtttgggacaattacaaacactactcccatgaatatttctgcacatacatcctagcacacacaggc---aagatgaatcctcaatttgacta-atcaggccaaactatttccaaagtgactatactgttgtgcagtctgcccagcaggctatgagcactcatgctgccccacagcctcaccaacacctggtattatcaccttt--aat--ttttgccactctggaggatgGGATATAGA--------gtg----tgt----------
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           401791 280 +  18854210 c-ttctaatggccatctgggttgtttctagttcaaaacaattacaaacactacttctgtgaatatttttgcacacatgtcctagcacacataggcaggaagatgcatcttcaatttgactagatcaggccaaactctttccaaattgactacactgctgtatgctctcccctgcaggctaccagcactcatgctgctccactgccttgccaaaacctg-tattgttggctttaaaat--ttttgccaatctggcatatggaaaataga--------atcacattgtgTGTGT----
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26402214 222 +  26524999 C-TTCCGACAGCCACCTGGAGCACTTCCTGTTTGGGACAATCA----CCCTGCT-CTGGGAAGGTCTGTGTCTGTGTGCCCTGGTGCGTTCGAGC---AG----------------------GTCAGGCCA-------CCCACACTGA-------------------ACC---CACGCTGAGGGCACtcacactgctccacagccctgctgacacctgctactgtcagcttt--tatggtattgccagtcaggaggacgagaaacagacgctcatggtT----TGTGT--------
i canFam3.chr35            I 441 C 0
e micMur3.chr6               447865 8769 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     402534 791 -   1411461 I

a score=-5390.000000
s hg38.chr6_GL000254v2_alt  1552943 8 +   4827813 gtgtgtgt----
s panTro5.chr6             30422020 3 + 175400573 -----tgt----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30656231 5 + 173848474 ---tgtgt----
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             30918116 8 + 172585720 gtgtgtgt----
i rheMac8.chr4             I 2 C 0
s macFas5.chr4             30208325 8 - 170955103 gtgtgtgt----
i macFas5.chr4             I 2 C 0
s macNem1.NW_012012100v1     456914 7 +   1495729 gtg-gtgt----
i macNem1.NW_012012100v1   I 4 C 0
s cerAty1.NW_012002535v1     560525 8 -    863181 gtgtgtgt----
i cerAty1.NW_012002535v1   I 2 C 0
s chlSab2.chr17            29707176 3 -  71996105 GTG---------
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012107142v1     443806 3 -    735854 GGG---------
i manLeu1.NW_012107142v1   I 2 C 0
s colAng1.NW_012115577v1     356891 8 -   1829203 gtgtgtgt----
i colAng1.NW_012115577v1   I 2 C 0
s calJac3.chr4             30538628 4 + 171630274 ----gtgt----
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496901v1     156947 4 -    486031 ----gtgt----
i aotNan1.NW_018496901v1   C 0 I 4
s otoGar3.GL873550           402071 2 +  18854210 ------AT----
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26402436 8 +  26524999 ----GTATTGGT
i canFam3.chr35            C 0 C 0
e micMur3.chr6               447865 8769 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     402534 791 -   1411461 I
e saiBol1.JH378341           342961 0 +    515838 C
e cebCap1.NW_016107755v1     972262 0 -   1771730 C
e nomLeu3.chr1a            75029031 0 + 122973662 C
e gorGor5.CYUI01015528v1     365027 15 +   2037526 I

a score=180969.000000
s hg38.chr6_GL000254v2_alt  1552951 45 +   4827813 gtgtgtgtgtgtgtgtg-tgtgtgtg------------tgtATTTAACTCCCCAAAAG------------------
s panTro5.chr6             30422023 45 + 175400573 gtgtgtgtgtgtgtgtg-tgtgtgtg------------tgtATTTAACTCCCCAAAAG------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30656236 45 + 173848474 gtgtgtgtgtgtgtgtg-tgtgtgtg------------tgtATTTAACTCCCCAAAAG------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     365042 45 +   2037526 gtgtgtgtgtgtgtgtg-tgtgtgtg------------tgtATTTAACTCCCCAAAAG------------------
i gorGor5.CYUI01015528v1   I 15 C 0
s nomLeu3.chr1a            75029031 29 + 122973662 ----------------G-TGTGCGTG------------TGTGTTTAACTCCCCAAAAG------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30918124 31 + 172585720 --------------gtg-tgtgtgtg------------tgtATTTAACTCCCCAAAAG------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30208333 31 - 170955103 --------------gtg-tgtgtgtg------------tgtATTTAACTCCCCAAAAG------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     456921 31 +   1495729 --------------gtgttgtgtgtg------------tgTATTTAACT-CCCAAAAG------------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     560533 31 -    863181 --------------gtg-tgtgtgtg------------tgtATTTAACTCCCCAAAAG------------------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29707179 28 -  71996105 ------------------TGTGTGTG------------TGTATTTAACTCCCCAAAAG------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     443809 28 -    735854 ------------------GGGGTGTG------------TGTATTTAACTCCCCAAAAG------------------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     356899 43 -   1829203 --------------gtg-tgtgtgtgtgtatgtATGTATGTATTTAACTCCCCAAAAG------------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30538632 43 + 171630274 --gtgtgtgtgtgtgtg-tgtgtgtg------------tgtgtgtAACTCTCCAAAAG------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           342961 43 +    515838 --gtgtgtgtgtatgag-tgtgtgtg------------tgtgtTTAACTCTCCAAAAG------------------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     972262 43 -   1771730 --gagagagagagagag-agagagTG------------TGTGTTTAACTCTCCAAAAG------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     156955 45 -    486031 gagagagtgtgtgtgtg-tgagcgtg------------tgtgtTTAACTCTCCAAAAG------------------
i aotNan1.NW_018496901v1   I 4 C 0
s otoGar3.GL873550           402073 10 +  18854210 ---------------------------------------------AACT--CTAATA-------------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26402444 35 +  26524999 -----------------------------------------GTTTAATGCTATTAGAGAAGAAGAGGGATAGAAGG
i canFam3.chr35            C 0 C 0
e micMur3.chr6               447865 8769 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     402534 791 -   1411461 I

a score=2080181.000000
s hg38.chr6_GL000254v2_alt  1552996 157 +   4827813 GAAACAGCATGAGACAGGCCCAATAACAGGCCAAGGAATCCTATAGCA-------GCAGACCAGATATTGTGCTCCTCGACCCAACCAGTAAATGTTGTAAATGTTTATCTTTGGGGAGAGAAG---------------------GGGAAGGGCCC----------ACCCAGCTTCTGTTCTTCTTTCCCTTGG-T
s panTro5.chr6             30422068 157 + 175400573 GAAACAGCATGAGACAGGCCCAATAACAGGCCAAGGAATCCTATAGCA-------GCAGACCAGATATTATGCTCCTCGACCCAACCAGTAAATGTTGTAAATGTTTATCTTTGGGGAGAGAAG---------------------GGGAAGGGCCC----------ACCCAGCTTCTGTTCTTCTTTCCCTTGG-T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30656281 157 + 173848474 TAAACAGCATGAGACAGGCCCAATAACAGGCCAAGGAATCCTATAGCA-------GCAGACCAGATATTATGCTCCTCGACCCAACCAGTAAATGTTGTAAATGTTTATCTTTGGGGAGAGAAG---------------------GGGAAGGGCCC----------ACCCAGCTTCTGTTCTTCTTTCCCTTGG-T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     365087 157 +   2037526 GAAACAGCATGAGACAGGCCCAATAACAGGCCAAGGAATCTTATAGCA-------GCAGACCAGATATTGTGCTCCTCGACCCAACCAGTAAATGTTGTAAATGTTTATCTTTGGGGAGAGAAG---------------------GGGAAGGGCCC----------ACCCAGCTTCTGTTCTTCTTTCCCTTGG-T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75029060 157 + 122973662 GAAACAGCATGAGACAGACCTAGTAACAGGCCAAGGAATCCTATAGCA-------GCAGACCAGATATTGTGCTCCTCGACCCAACCAATAAATGTTGTAAATGTTTATCTTTGGGGAGAGAAG---------------------GGGAAGGGCCC----------ACCCAGCTTCTGTTCTTCTTTCCCTTGG-T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30918155 157 + 172585720 GAAACAGCATGAGAGAGGCCCAGTAACAGGCCAAGGAACCCTATAGCA-------GTAGACCAGATATTATGCTCCTCGACCCAACCAGTAAATGTTGTAAATGTTTATCTTTGGGGAGAGAAG---------------------GGGAAGGGCCC----------ACCCAGCTTCTGTTCTTCTTTCCCTTGG-T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30208364 157 - 170955103 GAAACAGCATGAGAGAGGCCCAGTAACAGGCCAAGGAACCCTATAGCA-------GTAGACCAGATATTATGCTCCTCGACCCAACCAGTAAATGTTGTAAATGTTTATCTTTGGGGAGAGAAG---------------------GGGAAGGGCCC----------ACCCAGCTTCTGTTCTTCTTTCCCTTGG-T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     456952 154 +   1495729 GAAACAGCATGAGAGAGG-CCAGTAACAGGCCAAGGAACCCTATAGCA-------GTAGACCAGATATTATGCTCCTCGAACCAACCAGTAAATGTTGTAAATGGTTATCTTTGGGGAAGAGAA---------------------GGGAAGGGCCC----------ACCCAGCTTCTG---TTCTTTCCCTTGGTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     560564 157 -    863181 GAAACAGCATGAGAGAGGCCCAGTAATAGGCCAAGGAACCCTATAGCA-------GTAGACCAGATATTATGCTCCTCGACCCAACCAGTAAATGTTGTAAATGTTTATCTTTGGGGAGAGAAG---------------------GGGAAGGGCCC----------ACCCAGCTTCTGTTCTTCTTTCCCTTGG-T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29707207 157 -  71996105 GAAACAGCATGAGAGAGGCCCAGTAAGAGGCCAAGGAACCCTATAGCA-------GTAGACCAGATAGTATGCTCCTCGACCCAACCAGTAAATGTTGTAAATGTTTATCTTTGGGGAGAGAAG---------------------GGGAAGGGCCC----------ACCCAGCTTCTGTTCTTCTTTCCCTTGG-T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     443837 157 -    735854 GAAACAGCATGAGAGAGGCCCAGTAACAGGCCAAGGAACCCTACAGCA-------GTAGACCAGATATTATGCTCCTCGACCCACCCAGTAAATGTTGTAAATGTTTATCTTTGGGGAGAGAAA---------------------GGGAAGGGCCC----------ACCCAGCTTCTGTTCTTCTTTCCCTTGG-T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     356942 178 -   1829203 GAAACAGCATGAGAGAGGCCCAGTAACAGGCCAAGGAACCCTATAGCA-------GTAGACCAGATATCGTGCTCCTCAACCCAACCAGTAAATGTTGTAAATGTTTATCTTTGGGGAGAGACATTTACAAACTCTCTGGGCCCTGGGAAGGGCCC----------ACCCAGCTTCTGTTCTTCTTTCCCTTGG-T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30538675 157 + 171630274 GAAACAGCATGAGATAGGCCCAATAACAGGACAAGGAATCCTACAGCA-------GCAGACCAGATATTGTGCTCCTTGACCCAACTAGTAAATGTTGTAAATGTTTATCTTTGGGGAAAGAAG---------------------GGGAAGGGCCC----------ACCCAGCTTCGGTTCTTCTTTGCCTTGG-T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           343004 157 +    515838 GAAACAGCATGAGAGAGACCCAGTAACAGGCCAAGGAATCCTATAGCA-------GCAGACCAGATATTGTGCTCCTTGACCCAACTAATAAATGTCGCAAATGTTTATCTTTGGGGAAAGAAG---------------------GGGAAGGGCCC----------ACCCAGCTTCGGTTCTTCTTCCCCTTGG-T
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     972305 157 -   1771730 GAAACAGCATGAGAGAGACCCAGTAACAGGCCAAGGAATCCTATAGCA-------GCAGACCAGATACTGTGCTCCTTGACCCAACTAGTAAATGGTGTAAATGTTTATCTTTGGGGAAAGAAG---------------------GGGGAGGGCCC----------ACCCAGCTTCGGTTCTTCTTCCCCTTGG-T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     157000 157 -    486031 GAAACAGCATGAGAGAGACCCAGTAACAGGCCAAGGAATCCTATAGCA-------GCAGACCAGATATTGTGCTCCTTGACCCAACTAGTAAATGTTGTAAATGTTTATCTTTGGGGAAAGAAG---------------------GGGAAGGGCCC----------ATCCAGCTTCGGTTCTTCTTTCCCTTGG-T
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               456634 154 + 123392446 GAAAGAGCATGAGAGAGGCCCAGTAACAGGCTAAGGGATACTATAGCA-------GCAGACCATATACTGTGCTCCTTGAGCCAACTAGTAAGTGCTGTAAATGTTCATCTTTTGG---AGGAG---------------------GGGAGGGGTAG----------GCCCAGCTTCTGCTCTTCCTTCCTTTGG-T
i micMur3.chr6             I 8769 C 0
s proCoq1.NW_012149775v1     403325 154 -   1411461 GAAAGAGCATGAGAGAGGCCCAGTAACAGGCTAAGGAACACTACAGCA-------GCGGACCAGATATTGTGCTCCTGGAGCTAGCTAGTAAGTGCTGTAAATGTTTATCTTTTGG---AGGAG---------------------GAGAGAGGTAG----------GCCCGGCTTCCATACTTCCTTCCTTTGG-T
i proCoq1.NW_012149775v1   I 791 C 0
s otoGar3.GL873550           402083 141 +  18854210 TAACCAGCATAAGAGAGGCCCAGTAACAGGCCAAGGAATCCTACAGCA-------GCTGACCAGATATT-----------------------GTGCTATAAATGTTTATGTTTTGG---AGAAA---------------------GGGAGTGGTGGGATAGATTCTGCCTAGATTCCCTTCTTCCTTCCTTTGG-T
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26402479 151 +  26524999 GAAGAGGCATGACACAGGCAGAGCGA-GCGCCCTGGAGCCTTCCAGCACATAAAGGTAGGAGAG-CCCTGTGCTCCCTGACCCAGA-AGCAAGTGCTACAAATGTTTATGCTTG-------------------------------GGGAGGGGTGC----------AACTCCTTTCCATCCCTCTTTCTTTTGC-T
i canFam3.chr35            C 0 I 1043
e mm10.chr17               58142990 3735 -  94987271 I

a score=2759572.000000
s hg38.chr6_GL000254v2_alt  1553153 208 +   4827813 AACTT-------------------------------------------------------------ACCATC-------TATGA-----------------G-TTAGTGAGATGGAGACATCCTAACCATTA--AT---CCAGGGAAAGGGAGGAATCTAAGCCATCAGCAAGGGAGTTAGTGCTttt-catcaaatttgagacacctgtgacatcacattttagcatctctgaaatgtgatcaattgcatg-tcataatttaactggcaaaatatttttttgatgtggagcataaaataa-
s panTro5.chr6             30422225 208 + 175400573 AACTT-------------------------------------------------------------ACCATC-------TATGA-----------------G-TTAGTGAGATGGAGACGTCCTAACCATTA--AT---CCAGGGAAAGGGAGGAATCTAAGCCATCAGCAAGGGAGTTAGTGCTttt-catcaaatttgagacacctgtgacatcacattttagcatctctgaaatgtgatcaattgcatg-tcataatttaactggcaaaatatttttttGATGTGGAGCATAAAATAA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30656438 208 + 173848474 AACTT-------------------------------------------------------------ACCATC-------TATGA-----------------G-TTAGTGAGATGGAGACATCCTAACCATTA--AT---CCAGGGAAAGGGAGGAATCTAAGCCATCAGCAAGGGAGTTAGTGCTttt-catcaaatttgagacacctgtgacatcacattttagcatctctgaaatgtgatcaattgcatg-tcataatttaactggcaaaatatttttttGATGTGGAGCATAAAATAA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     365244 208 +   2037526 AACTT-------------------------------------------------------------ACCATC-------TATGA-----------------G-TTAGTGAGATGGAGACATTCTAACCATTA--AT---CCAGGGAAAGGGAGGAATCTAAGCCATCAGCAAGGGAGTTAGTGCTttt-catcaaatttgagacacctgtgacatcacattttagcatctctgaaatgtgatcaattgcatg-tcataatttaactggcaaaatatttttttGATGTGGAGCATAAAATAA-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75029217 208 + 122973662 AACTT-------------------------------------------------------------ACCATC-------TATGA-----------------G-TTAGTGAGATGGAGACATTCTAACCATTA--AT---CCAGGGAAAGGGAGGAATCTAAGCCATCAGCAAGGGAGTTAGTGCTttt-catcaaatttgagacacctgtgacatcacattgtagcatctctgaaatgtgatcaatcgcatg-tcataatttaactggcaaagtatttttttGATGTGGAGCATAAAATAA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30918312 207 + 172585720 AACTT-------------------------------------------------------------ACCATC-------TATAA-----------------G-TCAGTGAGATGGAGATATTCTAACCATTA--AT---CCAGGGAAAGGGAGGAATCCAAGCCATCAGCTAGGGAGTTACTGCTttt-catcaaatttgagacacctgtgacatcacattttggcatctctgaaatgtgatcaatggcatg-tcataatttaactggcaaaatattttttt-atgtggagcataaaataa-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30208521 207 - 170955103 AACTT-------------------------------------------------------------ACCATC-------TATAA-----------------G-TCAGTGAGATGGAGATATTCTAACCATTA--AT---CCAGGGAAAGGGAGGAATCCAAGCCATCAGCTAGGGAGTTACTGCTttt-catcaaatttgagacacctgtgacatcacattttagcatctctgaaatgtgatcaatggcatg-tcataatttaactggcaaaatattttttt-atgtggagcataaaataa-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     457106 205 +   1495729 AACTT-------------------------------------------------------------ACCATC-------CATAA-----------------GTTCAGTGAGATGG-GATATTCTAACCATTA--AT---CCAGGGAAAGGGAGGAATCC-AGCCATCAGCTAGGGAGTTACTGCTttt-catcaaatttgaggacactgtgacatcaca-tttagcatctctgaaatgtgatcaatggcatgttcataatttaactggcaaaata-tttttt-ATGTGGAGCATAAAATAA-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     560721 207 -    863181 AACTT-------------------------------------------------------------ACCATC-------TATAA-----------------G-TCAGTGAGATGGAGATATTCTAACCATTA--AT---CCAGGGAAAGGGAGGAATCCAAGCCATCAGCTAGGGAGTTACTGCTTTT-CATCAAAGTTGAGACACCTGTGACAtcacattttagcatctctgaaatgtgatcaatggcatg-tcataatttaactggcaaaatattttttt-atgtggagcataaaataa-
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29707364 207 -  71996105 AACAT-------------------------------------------------------------ACCATC-------TATAA-----------------G-TCAGTGAGATGGAGATATTCTAACCATTA--AT---CCAGGGAAAGGGAGGAATCCAAGCCATCAGCTAGGGAGTTACTGCTttt-catcaaatttgagacacctgtgacatcacattttagcatctctgaaatgtgatcaatggcatg-tcataatttaactggcaaaatattttttt-atgtggagcataaaataa-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     443994 207 -    735854 AACTT-------------------------------------------------------------ACCATC-------TATGA-----------------G-TCAGTGAGATGGAGATATTCTAACTATTA--AT---CCAGGGAAAGGGAGGAATCCAAGCCATCAGCTAGGGAGTTACTGCTttt-catcaaatttgagacacctgtgacatcacattttagcatctctgaaatgtgatcaatggcatg-tcataatttaactggcaaaatattttttt-ATGTGGAGCATAAAATAA-
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     357120 208 -   1829203 AACTT-------------------------------------------------------------ACCATC-------TATGA-----------------G-TCAGTGAGATGGAGATATTCTAACCATTA--AT---CCAGGGAAAGGGAGGAATCCAAGCCATCAGCTAGGGAGTTACTGCTttt-catcaaatttgagacacctgtgacatcacattttagcatctctgaaatgtgatcaatggcatg-tcataatttaactggcaaaatatttttttGATGTGGAGCATAAAATAA-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30538832 208 + 171630274 AACTT-------------------------------------------------------------ACCACC-------TATGA-----------------G-TTAGTGAGATGGAGATACTCTAACTGTTA--AT---CCAGAGAAAGGGAGGAATCTAAGCCATCAGCTAGGAAGTTACTGCTttt-catcaaatttgagacacctatgacatcacactttagcatctctgaaatgtgatcaatggcatg-tcttaatttaactggcaaaatatttttttcatgtggagcacaaaatag-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           343161 208 +    515838 AACTT-------------------------------------------------------------ACCACC-------TATGA-----------------G-GTAGTGAGATGGAGATATTCTAACCATTA--AT---CCAGGGAAAGGGAGGAATCTGAGCCATCAGCTAGGAAGTTACTGCTttt-catcaaatttgagacacctatgacatcacactttagcatctctgaaatgtgattaatggcatg-tcttaatttaactggcaaaatatttttttGATGTGGGGCATAAAATAA-
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     972462 200 -   1771730 AA---------------------------------------------------------------------C-------TATGA-----------------G-TTAGTGAGATGGAGATATTCTAACCGTTA--AT---CCAGGGAGAGGGAGGAAGCTAAGCCATCAGCTAGGAAGTTACTCCTttt-catcaaatttgagacacctatgacatcacattttagcatctctgaaatgttttcaatggcatg-tcttaatttaaccggcaaaatatttttttGATATGGAGCATAAAATAA-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     157157 203 -    486031 AACTT-------------------------------------------------------------ACCACC-------TATGA-----------------G-TTAGTGAGATGGAGATATTCTAACCGTTA--AT---CCAGGGAAAGGGAGGAATCTAAGCCATCAGCTAGGAAGTTACTGCTttt-catcaaatttgagacacc-----cattacactttagcatctctgaaatgtgatcaatggcatg-tcttaatttaactggcaaaatatttttttGACGTGGAGCACAAAATAA-
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               456788 209 + 123392446 AACTT-------------------------------------------------------------AACATC-------T-TGA-----------------G-TTACTGGGATGGAGATATTCTATCCATTCATAT---CCAGGGGCAGGGAGATATCTAAGCCATCAGCTAGGGAGTTGCTGTTCtt-catcaaatttgagacacctatgacatcacagttgagcatctctgaagtgtcactaacagcatg-tcacagtttaactggcaaaatattttctctatgtggaatataaaataa-
i micMur3.chr6             C 0 I 557
s proCoq1.NW_012149775v1     403479 208 -   1411461 AACTT-------------------------------------------------------------AACATC---------TGC-----------------A-TTAGTGAGATGGAGATATTCTAACCATTCATAT---CCATGGGGAGGGAGGGATCTAAGCCATCAGCTAGGGCGTTGCTGTTTTT-CATCAAATTTGCGACATCTATGACATAacattttagcatctctgaagtgtgactgacggcatg-tcacagtttaactggcaaaatattttttctatgtgcaacataaaataa-
i proCoq1.NW_012149775v1   C 0 I 520
s otoGar3.GL873550           402224 285 +  18854210 ATCTTCatagatcagtggttctcaacctgtgagttgtgacccctttggactgtattaaaggtttgcagcattaggaaggt-tgaaaaccactgTCATAGATG-TTAGTGAGATGGAGATATTCTAACCACTCATAT---CCAGGAGAAGG----------AGCAATCAGCTAGGGAGTTActgtttttgcatcaaatgtaagacacccatgacatcacactttactatctctgaggtgtgactgacgacatg-tcatagcttaattggcaaaatgttttttccatatggaacataaaataa-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26403673 208 +  26524999 AACTC-------------------------------------------------------------AACATC-------GAC-A-----------------G-TAGGTGGGACAGAGATACTCTTACCATGC--ATTTCCCAGAGAAAGG--GGGATCTAAGCAACTAGCAAGGGAGTTAA-ACTTTA-CATCAAATATAAGAAATCCATGTGCTTACATTTCAGCACCTCTGAAATGTGATCAGTATGATA-TCATAACTCAACTGGAAAGACATGTTTTCTATGTGGAGCATACACAGAT
i canFam3.chr35            I 1043 C 0
e mm10.chr17               58142990 3735 -  94987271 I

a score=211133.000000
s hg38.chr6_GL000254v2_alt  1553361 22 +   4827813 gggca-catAAAAGATTTGGTGG
s panTro5.chr6             30422433 22 + 175400573 GGGCA-CATAAAAGATTTGGTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30656646 22 + 173848474 GGGCA-CATAAAAGATTTGGTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     365452 22 +   2037526 GGGCA-CATAAAAGATTTGGTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75029425 22 + 122973662 GGGCA-CATAAAAGATTTGGTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30918519 22 + 172585720 gggca-caCAAAAGATTTGGTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30208728 22 - 170955103 gggca-caCAAAAGATTTGGTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     457311 21 +   1495729 -GGCA-CACAAAAGATTTGGTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     560928 22 -    863181 gggca-caCAAAAGATTTGGTGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29707571 22 -  71996105 gggca-caCAAAAGATTTGGTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     444201  5 -    735854 ------------------GGTGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     357328 22 -   1829203 GGGTG-CACAAAAGATTTGGTGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30539040 22 + 171630274 gggca-cataaaagaattgatgg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           343369 22 +    515838 GGGCA-CATAAAAGAAGTGATGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     972662 22 -   1771730 GGGCA-CATAAAAGAATTGATGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     157360 22 -    486031 GGGCA-CATAAAAGAATTGATGG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           402509 22 +  18854210 ggaca-cataaaataattgatgg
i otoGar3.GL873550         C 0 C 0
s canFam3.chr35            26403881 23 +  26524999 GGACAGCATCTTAGATTTGCTGG
i canFam3.chr35            C 0 N 0
e micMur3.chr6               456997 557 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     403687 520 -   1411461 I

a score=4584648.000000
s hg38.chr6_GL000254v2_alt  1553383 442 +   4827813 tgctg--tggtttgaacatgtc-ccccaaaagttcacgtgttggaaacgtaattgccaatgtaacggtattaagaggtggggtctttaagacgtgactgggtcatgaggg--tgt------------------aactctcatgaatg--------------gattaatgcctt-tcttgcaaga-------------------------gtCCATT--------------------------------GG---ccagaaccgtgagctgaataaacatctgttgtttacaatttacccagtctgtggtattctgttacagc-aacagaaaatggattaagacaAATAGCATCTTAGATTTGGTGAGATGTGGCA-TATTTCCTAAAAAGTGCTGCCAGGATCATCCTTCTAGCACACAGGATCTCATCCTTGTTATTCTCCTGCTTCAAATCTCCTAGCTGAggctgggtttggtgcctcatgcctataatcctagcactgtgggaggctgaggcaggaggatcccttgaatc----caggggttc
s panTro5.chr6             30422455 445 + 175400573 tgctg--tggtttgaacatgtc-ccccaaaagttcacgtgttggaaacgtaattgccaatgtaacagtattaagaggtggggtctttaagacgtgactgggtcatgaggg--tgg------------------aactctcatgaatg--------------gattaatgcctt-tcttgcaaga-------------------------gtCCATT--------------------------------Ggcctccagaaccgtgagctgaataaacatctgttgtttacaatttacccagtctatggtattctgttacagc-aacagaaaatggattaagacaAATAGCATCTTAGATTTGGTGAGATGTGGCA-TATTTCCTAAAAAGTGCTGCCAGGATCATCCTTCTAGCACACAGGATCTCATCCTTGTTATTCTCCTGCTTCAAATCTCCTAGCTGAggctgggtttggtgcctcatgcctataatcctagcactgtgggaggctgaggcaggaggatcccttgaatc----caggggttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30656668 445 + 173848474 tgctg--tggtttgaacatgtc-ccccaaaagttcacgtgttggaaacgtaattgccaatgtaacagtattaagaggtggggtctttaagacgtgactgggtcatgaggg--tgg------------------aactctcatgaatg--------------gattaatgcctt-tcttgcaaga-------------------------gtCCATT--------------------------------Ggcctccagaaccgtgagctgaataaacatctgttgtttacaatttacccagtctatggtattctgttacagc-aacagaaaatggattaagacaAATAGCATCTTAGATTTGGTGAGATGTGGCA-TATTTCCTAAAAAGTGCTGCCAGGATCATCCTTCTAGCACACAGGATCTCATCCTTGTTATTCTCCTGCTTCAAATCTCCTAGCTGAggctgggtttggtgcctcatgcctataatcctagcactgtgggaggctgaggcaggaggatcccttgaatc----caggggttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     365474 445 +   2037526 tgctg--tagtttgaacatgtc-ccccaaaagttcacgtgttggaaacgtaattgccaatgtaacagtattaagagatggggtctttaagacgtgcctgggtcatgaggg--tgg------------------aactctcatgaatg--------------gattaatgcctt-tcttgcaaga-------------------------gtccact--------------------------------ggcctccagaaccatgagctgaataaacatctgttgtttacaatttacccagtctatggtattctgttacagc-aacagaaaatggattaagacaAATAGCATCTTAGATTTGGTGAGATGTGGCA-TATTTCCTAAAAAGTGCTGCCAGGATCATCCTTCTGGCACACAGGATCTCATCTTTGTTATTCTCCTGCTTCAAATCTCCTAGCTGAggctgggtttggtgcctcatgcctataatcctagcactgtgggaggctgaggcaggaggatcccttgaatc----caggggttc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75029447 444 + 122973662 tgttg--tggtttgaacatgtc-ccccaaaacttcacgtgttggaaacgtaattgccaatgtaacagtattaagaggtggggtctttaagatgtgactgggtcatgaggg--tgg------------------aactctcaggaatg--------------gattaatgccat-tcttgctaga-------------------------gtccatt--------------------------------ggcctccagaactgtgagctgaataaacatctgttgtttacaatttacccagtctatggtattctgttacagc-aacagaaaatggattaagacaAATAGCATCTTAGATTTGGTGAGATGTGGCA-TATTTCCTAAAAAGTgctgccaggatcatccttctagcacacaggatctcatcc-tgttattctcctgcttcaaatctcctagCTGAggctgggtttggtgcctcatgcctataatcctagcactttgggaggctgaggcaggaggatcccttgaatc----caggggttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30918541 441 + 172585720 tgctg--tggtttgaacatgtc-ccccaaaagttcacctgttggaaacttaattgccagtgtaacagtattaagaggtggggtttttaaaacctgactgggtcatgaggg--ttg------------------aactctcatgaatg--------------gattaatgcaat-tcttgctaga-------------------------gACTATT--------------------------------Ggcctccagaaccgtgagctgaataaaca--cgttatttacaatttatccagtctatggtattctgttatagc-aagagaaaatggattaagacaAATAACATCTTAGATTTGGTGAGATGTGGCA-TATTTCCTAAAAAGTgctgccaggatcatccttctagcacacaggatctcatcc-tgttattctcctgtttcaaatctcctagCTGAggctgggtttggtgccttatgcctgtaatcctagcactttgggaggctgaggcagaaggatccctt-aacc----caggcgttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30208750 441 - 170955103 tgctg--tggtttgaacatgtc-ccccaaaagttcacgtgttggaaacttaattgccagtgtaacagtattaagaggtggggtttttaaaacctgactgggtcatgaggg--ttg------------------aactctcatgaatg--------------gattaatgcaat-tcttgctaga-------------------------gACTATT--------------------------------Ggcttccagaaccgtgagctgaataaaca--cgttatttacaatttatccagtctatggtattctgttatagc-aagagaaaatggattaagacaAATAACATCTTAGATTTGGTGAGATGTGGCA-TATTTCCTAAAAAGTGCTGCCAGGATCATCCTTCTAGCACACAGGATCTCATCC-TGTTATTCTCCTGTTTCAAATCTCCTAGCTGAggctgggtttggtgccttatgcctgtaatcctagcactttgggaggctgaggcagaaggatccctt-aacc----caggcgttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     457332 443 +   1495729 TGCTGGTGggtttgaacatgtc-ccccaaaagttcacgtgttggaaacttaattgccagtgtaacagtattaagaggtggggtttttaaaacgtgactgggtcatgaggg--ttg------------------aactctcatgaatg--------------gattaatgcaat-tcttgcTAca-------------------------gactatt--------------------------------ggcctccagaaccgtgagctgaataaaca--cgttatttacaatttatccagtctatggtattctgttatagc-aagagaaaatggattaagacaAATAACATCTTAGATTTGGTGAGATGTGGCA-TATTTCCTAAAAAGTGCTGCCAGGATCATCCTTCTAGCACACAGGATCTCATCC-TGTTATTCTCCTGTTTCAAATCTCCTAGCTGAggctgggtttggtgccttatgcctgtaatcctagcacttcgggaggctgaggcagaaggatccctt-aacc----caggcgttc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     560950 441 -    863181 tgctg--tggtttgaacatgtc-ccccaaaagttcacgtgttggaaacttaattgccagtgtaacagtattaagaggtggggtttttaaaacgtgactgggtcatgaggg--ttg------------------aactctcatgaatg--------------gattaatgcaat-tcttgctaga-------------------------gACTATT--------------------------------Ggcctccagaaccgtgagctgaataaaca--tgttatttacaatttatccagtctatggtattctgttatagc-aagagaaaatggattaagacaAATAACATCTTCGATTTGGTGAGATGTGGCA-TATTTCCTAAAAAGTgctgccaggatcatccttctagcacagaggatctcatcc-tgttattctcctgtttcaaatctcctagCTGAggctgggtttggtgccttatgcctgtaatcccagcactttgggaggctgaggcagaaggatccctt-aacc----caggcgttc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29707593 441 -  71996105 tgctg--tggtttgtacatgtc-ccccaaaagttcacgtgttggaaacttaattgccagtgtaacagtattaagaggtggggtttttaaaacgtgactgggtcatgaggg--ttg------------------aactctcatgaatg--------------gattaatgcaat-tcttgctaga-------------------------gACTATT--------------------------------Ggcctccagaaccgtgagctgaataaaca--cgttatttacaatttatccagtctatggtattctgttatagc-aagagaaaatggattaagacaAATAACATCTTCGATTTGGTGAGCTGTGGCA-TATTTCCTAAAAAGTgctgccaggatcatccttctagcacacaggatctcatcc-tgttattctcctgtttcaaatctcctagCTGAggctgggtttggtgccttatgcctgtaatcctagcactttgggaggctgaggcagaaggatacctt-aacc----caggcattc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     444206 441 -    735854 tgctg--tggtttgaacatgtc-ccccaaaagttcacgtgttggaaacttaattgccagtgtaacagtattaagaggtggggtttttaaaacgtgactgggtcatgaggg--ttg------------------aactctcatgaatg--------------gattaatgcaat-tcttgctaga-------------------------gACTATT--------------------------------Ggcctccagaaccgtgagctgaataaaca--tgttatttacaatttatccagtctatggtattctgctatagc-aagagaaaatggattaagacaAATAACATCTTCGATTTGGTGAGATGTGGCA-TATTTCCTAAAAAGTgctgccaggatcatccttctagcacacaggatctcatcc-tgttattctcctgtttcaaatctcctagCTGAggctgggtttggtgccttatgcctgtaatcctagcactttgggagtctgaggcagaaggatccctt-accc----caggcgttc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     357350 442 -   1829203 tgctg--tggtttgaacatgtc-ccccaaaagttcacgtgttggaaacttaattgccagtgtaacagtattaagaggtgtggttttaaaaacgtgactgggtcatgaggg--ttg------------------aactctcatgaatg--------------gattaatggtat-tcttgctaga-------------------------gACCACT--------------------------------Ggcctccagaaccgtaagctgaataaaca--tgttatttacaatttatccagtctatggtattctgttatagc-aagagaaaatggattaagacaAATAGCATCTTAGATTTGGTGAGATGTGGCA-TATTTCCTAAAAAGTgctgccaggatcatccttctagcacacaggatctcatcc-tgttattctcctgtttcaaatctcccagCTGAggctgggtttggtgcttcatgcctgtaatcctagcactttgggaggctgaggcaggaggatcccttgaacc----caggggttc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30539062 435 + 171630274 tgctg--tggtttgaacatgtc-cccccaaaattcacatgttggaaatttaattgccagtgtaacagtattaagaagtggggtctttaagatgtgactgggtcatgacgg--tgg------------------atctctcatg-atg--------------gattaatgccat-tcttgctaga-------------------------gCCCATT--------------------------------Ggcttccagatccgtgagctgaataaacatctgttgtttacaatttaaccagcctgtggtattctgttatagc-aacagaaaatggattaagataAACAGCATCTTAGATTTGGTGAGATGTGGCA-TATCTCCTAAAAAGTGCTCCCAGGATCATTCTTCTAGCACACAGGATCTCATCC-TGTTATTCTCCTGCTTCAAATCTTCTAGCTGAGGCTGggctcag-------tgcctataatctgagcactttgggaggctgaggcgggaggatcccttgaacc----ca-gggttc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           343391 437 +    515838 tgctg--tggtttgaacacgtc-ccccaaaagttcacgtgttggaaacttaattgccaatgtaacggtattaagaagtggggtctttaagatgtgactgggtcatgaggg--tgg------------------aactctcatg-atg--------------gattaatgccat-tcttgctaga-------------------------gtCCATT--------------------------------Ggcttccagatccgtgagctgaataaacatctgttgtttacaatttaaccagcctgtggtattctgttacagc-aacagaaaatggattaagataAATAGCATCTTAGATTTGGTGAGATGTGGCATTATCTCCTAAAAAGTGTTCCCAGAATCATCCTTCTACCACACAGGATCTCATCC-TGTTATTCTCCTGCTTCAAATCTTCTAGCTGAGGTTGGGCTTGG-------Tgtctgtaatctgagcactttgggaggctgaggcaggaggatcccttgaacc----caggggttc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     972684 436 -   1771730 tgctg--tggtttgaacatgtc-ccccaaaagttcacgtgttggaaacttaattgccaatgtaacggtattaagaagtggggtctttaagatgtgactgggtcatgaggg--tgg------------------aactctcatg-atg--------------gattaatgccat-tcttgctaga-------------------------gtccatt--------------------------------ggcttccagatccgtgagctgaataaacatctgttgtttacaatttaaccagcctgtggtattctgttacagc-aacagaaaatggattaagataAATAGCATCTTAGATTTGGTGAGATGTGGCA-TATCTCCTAAAAACTGTTCCCAGAATCATCCTTCTAGCACACAGGATCTCATCC-TGTTATTCTCCCGCTTCAAATCTTCTAGCTGAGGTTGGGCTTgg-------tgtctgtaatctgagcactttgggaggctgaggcaggaggatcccttgaacc----caggagttc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     157382 436 -    486031 tgctg--tggtttgaacatgtc-ccccaaaagttgatatgttggaaacttaattgccaatgtaacagtattaacaagtggggtctttaagatgtgactgggtcatgaggg--tgg------------------aactctcatg-atg--------------gattaatgccat-tcttgctagt-------------------------gtccatt--------------------------------ggcttccagatccgtgagctgaataaacatctgttgtttacaatttaactaacctgtggtattctgttatagc-aacagaaaatggattaagataAATAGCATCTTAGATTTGGTGAGATGTGACA-TATCTCCTAAAAACTATTCCCAGGATCATCCTTCTAGCACACAGGATCTCATCC-TGTTATTCTCCTGCTTCAACTCTTCTAGCTGAggctgggcttgg-------tgcctgtaatctgagcactttgggaggctgaggcaggaggatcccttgaacc----caggagttc
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           402531 512 +  18854210 tgcta--tagtgtcagtgtatctcccccgaagttcacatgttggaaactta---------------------------ggggcctttaagaggtgactgggtcatgagggaatggagtgcctttcctagagtcagctgttataaaagccagcccagcttgctgttaatggtctgtcttgcttgctgactttcaccttccaccatgggatgacccttccagatgctggcacaacactcgtggactttccagtttccagaactatgagctgagaaaacatgtattgtttacaatttaccaattctgttgtattctgttatagcaaataagaaacagattaagacaaacggcattgtagatttgGAGAGACGTGGCA-TACCTCCTACAAAGGACCACCAGGATCATTTTCTGAGCACACAGGATCTCATCC-TGTTATTCTCCTGCTTCAAAACACCTAGCT--ggctggacacagtgactcacatctgtaattctagcactctgagaga-tgaggtaggaggattccttgagctAAGGcaggggtcc
i otoGar3.GL873550         C 0 I 146
e micMur3.chr6               456997 557 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     403687 520 -   1411461 I

a score=786092.000000
s hg38.chr6_GL000254v2_alt  1553825 126 +   4827813 aagactagcctggccaacatagggagagactgtctct-aaaataa--aataaa--taaataaaaataaaaataaaaataaaaacaa----acacaccaaaaaaaCTCCTACTAGCTGAGGTCAAAACTGCACAGG
s panTro5.chr6             30422900 120 + 175400573 aagactagcctggccaacatagggagagactgtctct-aaaataa--aataaa--taaataaaaataaaaataaaaat------aa----acacaccaaaaaaaCTCCTACTAGCTGAGGTCAAAACTGCACAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30657113 126 + 173848474 aagactagcctggccaacatagggagagactgtctct-aaaataa--aataaa--taaataaaaataaaaataaaaataaaaacaa----acacaccaaaaaaaCTCCTACTAGCTGAGGTCAAAACTGCACAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     365919 126 +   2037526 aagactagcctggccaacatagggagagactgtctct-aaaataa--aataaa--taaataaaaataaaaataaaaataaaaacaa----acacaccaaaaaaaCTCCTACTAGCTGAGGTCAAAACTGCACAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75029891  69 + 122973662 aagatcagcctgggcaacatagggagactctgtctctaaaaaaaa--aataaa--TAAATAAAAATAAAAATA--------------------------------------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30918982 122 + 172585720 aagaccagcctgggcaacataaggagaccctgtctctaaaaaaaa--TATAAG--Taaataaaaataaaaata--aattaa---aa----acaaaacaaaaaaaCTCCTACTAGCTGAGGTCAAAACTGCACAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30209191 122 - 170955103 aagaccagcctgggcaacataaggagaccctgtctctaaaaaaaa--TATAAA--Taaataaaaataaaaata--aattaa---aa----acaaaacaaaaaaACTCCTACTAGCTGAGGTCAAAACTGCACAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     457775 119 +   1495729 aagaccagcctgggcaacataaggagaccctgtctctaaaaaaaa--TATaaa--taaataaaaataaaaata--aattaa---aa----acaaaac-aaaaaaCTCCT--TAGCTGAGGTCAAAACTGCACAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     561391 122 -    863181 aagaccagcctgggcaacataaggagaccctgtctctaaaaaata--tataaa--taaataaaaataaaaata--aattaa---aa----acaaaacaaaaaaaCTCCTACTAGCTGAGGTCAAAACTGCACAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29708034 122 -  71996105 aagaccagcctgggcaacataaggagaccctgtctctaaaaaata--tataaa--taaataaaaataaaaata--aattaa---aa----acaaaacaaaaaaaCTCCTACTAGCTGAGGTCAAAACTGCACAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     444647 122 -    735854 aagaccaggctgggcaaattaaggagaccctgtctcttaaaaaaa--TATAAA--Taaataaaaataaaaata--aattaa---aa----acaaaacaaaaaaACTCCTACTAGCTGAGGTCAAAACTGCACAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     357792 112 -   1829203 aagaccagcctgggcaacataaggagaccctgtctctaaaaa--------------aaataaaaaTAAAAATA--AATTAA---AA----ACAAACCAAAAAAACTCCTACTAGCTGAGGTCAAAACTGCACAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30539497 121 + 171630274 aagaccagcctgggcaacataaggagaccctgtctc-taaaaaaa--taataa--taattaattaattaatta--aaataa---aa----aCAAACCAAAAAAACTCCTACTAGCTGAGGTGGAAACTGCACAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           343828  87 +    515838 aagaccagcctgggcaacatagggagaccctgtctcttaaaataa--taataa--taattaattaattaatta--aaataa---aa----------CAAACAAACC-----------------------------
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     973120 130 -   1771730 aagaccagcctgggcaacatagggagaccctgtctcttaaaaaaaataaataaataaaataattaattaatta--aaatac---aaacaaacaaaccaaaaaaACTCCTACTAGCTGAGGTCAAAACTGCACAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     157818 118 -    486031 aagaccagcctgggaaacatagggagaccctgcctctaaaaaaaa------aa--aaaTTAATTAATTAATTA--AATTAA---AA----ACAAACCAAAAAAACTCCTACTAGCTGAGGGCAAAACTGTACAGG
i aotNan1.NW_018496901v1   C 0 C 0
e micMur3.chr6               456997 557 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     403687 520 -   1411461 I
e otoGar3.GL873550           403043 146 +  18854210 I

a score=6006.000000
s hg38.chr6_GL000254v2_alt  1553951 1 +   4827813 T
s panTro5.chr6             30423020 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30657239 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     366045 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30919104 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30209313 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     457894 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     561513 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29708156 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     444769 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     357904 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30539618 1 + 171630274 T
i calJac3.chr4             C 0 C 0
e micMur3.chr6               456997 557 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     403687 520 -   1411461 I
e saiBol1.JH378341           343915 0 +    515838 C
e otoGar3.GL873550           403043 146 +  18854210 I
e aotNan1.NW_018496901v1     157936 0 -    486031 C
e cebCap1.NW_016107755v1     973250 0 -   1771730 C
e nomLeu3.chr1a            75029960 0 + 122973662 C

a score=79262.000000
s hg38.chr6_GL000254v2_alt  1553952 19 +   4827813 ggcc-gggcacggtgcctca
s panTro5.chr6             30423021 19 + 175400573 ggcc-gggcacggtggctca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30657240 19 + 173848474 ggcc-gggcacggtggctca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     366046 18 +   2037526 ggcc--ggcacggtggctca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75029960 18 + 122973662 -gcc-aggcgcggtggctca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30919105 20 + 172585720 GGCccaggagtggtggctca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30209314 20 - 170955103 GGCccaggagtggtggctca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     457895 20 +   1495729 GGCccaggagtggtggctca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     561514 20 -    863181 GGCccaggagtggtggctca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29708157 20 -  71996105 GGCCCAGCAgtggtggctca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     444770 20 -    735854 GGCccaggagtggtggctca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     357905 20 -   1829203 AGCccaggagtggtggttca
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           343915  7 +    515838 -------------tggctca
i saiBol1.JH378341         C 0 C 0
e micMur3.chr6               456997 557 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     403687 520 -   1411461 I
e otoGar3.GL873550           403043 146 +  18854210 I
e aotNan1.NW_018496901v1     157936  0 -    486031 C
e cebCap1.NW_016107755v1     973250  0 -   1771730 C
e calJac3.chr4             30539619  0 + 171630274 C

a score=1124982.000000
s hg38.chr6_GL000254v2_alt  1553971 167 +   4827813 cgcctgtaatcccagcactttgggaggccgaggtgggcagat-catgaggtcaagagatcgagaccatcctggccaacatggtgaaacccagc-ctctactaaaaatac-aaaaattagccgggcatggtggcacgcgcctgcagtcctagctactcgg-gaggctgaggc
s panTro5.chr6             30423040 167 + 175400573 cgcctgtaatcccagcactttgggaggccgaggcgggcagat-catgaggtcaagagatccagaccatcctgtccaacatggtgaaacccagc-ctctactaaaaatac-aaaaattagccaggcatggtggcacgcgcctgtagtcctagctactcgg-gaggctgaggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30657259 167 + 173848474 cgcctgtaatcccagcactttgggaggccgaggcgggcagat-catgaggtcaagagatccagaccatcctgtccaacatggtgaaacccagc-ctctactaaaaatac-aaaaattagccgggcatggtggcacgcgcctgtagtcctagctactcgg-gaggctgaggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     366064 167 +   2037526 cgcctgtaatcccagcactttgggaggccgaggcgggcagat-catgaggtcaagagatcgagaccatcctggccaacatggtgaaacccagc-ctctactaaaaatac-aaaaattagccgggcatggtggcacgcgcctgtagtcctagctactcgg-gaggctgaggc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75029978 157 + 122973662 cgcttgtaatcccagcactttgggaggccgaggcgggcggat-cacgaggtcaggagatcaagac------------cacagtgaaaccccgt-ctctactaaaaatacaaaaaattagccgggcgtggtggcaggcgcctgtagtcccagctactcggagaggctgaggc
i nomLeu3.chr1a            C 0 M 100
s rheMac8.chr4             30919125 167 + 172585720 tgcctgtaatcccagcactttgggaggctgaggcaggcggat-catgaggtcaagagatcgagatcatcctggccaacatggtgaaacccagc-ctctactaaaaatac-aaaaattagctgggcgtggtagcattcacctgcagtctcaggtactcgg-gaggctgaggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30209334 167 - 170955103 tgcctgtaatcccagcactttgggaggctgaggcaggcggat-catgaggtcaagagatcgagatcatcctggccaacatggtgaaacccagc-ctctactaaaaatac-aaaaattagctgggcgtggtagcattcacctgcagtctcaggtactcgg-gaggctgaggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     457915 166 +   1495729 tgcctgtaatcccagcactttgggaggctgaggcaggcggat-catgaggtcaagagatcgagatcatcctggccaacatggtgaaacccagc-ctctact-aaaatac-aaaaattagctgggcatggtagcattcacctgcagtctcaggtactcgg-gaggctgaggc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     561534 167 -    863181 tgcctgtaatcccagcactttgggaggctgaggcaggcggat-catgaggtcaagagatcgagatcatcctggccaacatggtgaaacccagc-ctctactaaaaatac-aaaaattagctgggcatggtagcattcacctgcagtctcaggtactcag-gaggctgaggc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29708177 167 -  71996105 tgcctgtaatcccagcactttgggaggctgaggcaggcggat-catgaggtcaagagatcgagatcatcctggccaacatggtgaaacccagc-ctctactaaaaatac-aaaaattagctgggcatggtagcattcacctgcagtctcaggtactcgg-gaggctgaggc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     444790 167 -    735854 tgcctgtaatcccagcactttgggaggctgaggcaggcagat-catgaggtcaagagatcgagatcatcctggccaacatgctgaaacccagc-ctctactaaaaatac-aaaaattagctgggcatggtagcattcacctgcagtctcaggtactcgg-gaggctgaggc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     357925 167 -   1829203 tgcctgtaatcccagcactttgggaggctgaggcaggcggat-catgaggtcaagagatcgagaccatcctggccaacatggtgaaacccagc-ctctactaaaaatat-aaaaattagctgggcatggtagcattcacctgcagtctcaggtactcgg-gaggctgaggc
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           343922 168 +    515838 cgcctgtaatctcagcactttgggaggctgaagcaggtagat-cacgagatcaagagatcgagaccatcctggtcaatatggtgaaaccccat-ctctactaaaaatacaaaaaattagcagggcatggtggcgcatgcctgtaatcccagctactcag-gaggctgaggc
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           403189 153 +  18854210 CACATGTAGCCC----------GCAGGCCATAGTTTgaggacgcctgagctaaggagttctagaaaaccctgagcaa------gagcctcatctctcccctaaaaatag-aaaaattagctgagagtggtggcatgcacctgtagtcgcagctacttag-aaggctgaggc
i otoGar3.GL873550         I 146 C 0
e micMur3.chr6               456997 557 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     403687 520 -   1411461 I
e aotNan1.NW_018496901v1     157936   0 -    486031 C
e cebCap1.NW_016107755v1     973250   0 -   1771730 C
e calJac3.chr4             30539619   0 + 171630274 C

a score=626143.000000
s hg38.chr6_GL000254v2_alt  1554138 119 +   4827813 aggagaatcgcttgaacccaggaggcggacgttgcagtgagctgagatcacgccactgcactccagcctgggtgac-agagcgag----------------------------actct--gactc------------aaaa----------------------caaaaaa-------------------aaaaaCTGCACAGA
s panTro5.chr6             30423207 116 + 175400573 aggagaatcgcttgaacccaggaggcggaggttgcagtgagctgagatcacgccactgcactccagcctgggtgac-agagcgag----------------------------actct--gactc------------aaaa----------------------c-aaaaa-------------------aaaaaCTG--CAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30657426 115 + 173848474 aggagaatcgcctgaacccaggaggcggaggttgcagtgagctgagatcacgccactgcactccagcctgggtgac-agagcgag----------------------------actcc--gactc------------aaaa----------------------c--aaaa-------------------aaaaaCTG--CAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     366231 118 +   2037526 aggagaatggcttgaacccaggaggcggaggttgcagtgagctgagatcacgccactgcactccagcctgggtgac-agagcgag----------------------------actcc--gactc------------aaaa----------------------c-aaaaa-------------------aaaaaCTGCAAAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30919292 117 + 172585720 aggagaattgcttgaacctgggaggcggaggttgcagtgagcagagatcgtgccactgcactccagcct-ggtgac-agagcgag----------------------------actct--gtctc------------aaaa----------------------c-aaaaa-------------------caaaaCTGCACAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30209501 117 - 170955103 aggagaattgcttgaacctgggaggcggaggttgcagtgagcagagatcgtgccactgcactccagcct-ggtgac-agagcgag----------------------------actct--gtctc------------aaaa----------------------c-aaaaa-------------------caaaaCTGCACAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     458081 117 +   1495729 aggagaattgcttgaacctgggaggcggaggttgcagtgagcagagatcgtgccactgcactccagcct-ggtgac-acagcgag----------------------------actct--gtctc------------aaaa----------------------c-aaaaa-------------------caaaaCTGCACAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     561701 117 -    863181 aggagaattgcttgaacctgggaggcggaggttgcagtaagcagagatcgtgccactgcactccagcct-ggtgac-agagcgag----------------------------actct--gtctc------------aaaa----------------------c-aaaaa-------------------caaaaCTGCACAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29708344 117 -  71996105 aggagaattgcttgaacctgggaggcggaggttgcagtgagcagagatcgtgccactgcactccagcct-ggtgac-agagcgag----------------------------actct--gtctc------------aaaa----------------------c-aaaaa-------------------caaaaCTGCACAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     444957 117 -    735854 aggagaattgcttgaacctgggaggcggaggttgcagtgagcagagatcgtgccactgcactccagcct-ggtgac-agagtgag----------------------------actct--gtctc------------aaaa----------------------c-aaaaa-------------------caaaaCTGCACAGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     358092 129 -   1829203 aggagaattgcttgaacctgagaggcggaggctgcagtgagccgagatcgtgcaactgcaccccagcct-ggtgac-agagcgag----------------------------actct--gtctcaaaacaaaaacaaaaa----------------------c-aaaaa-------------------caaaaCTGTACAGG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           344090 162 +    515838 aggagaactgcctgaacccaggaggcggaggttgcggtgagccaagatcgtgccactgcactccagcctgggtaacaagagcgaa----------------------------actctccgtctc------------aaaaagaaacaaacaaacaaataaacc-aaaaaAATTCCTACTAGCTAAGGTCAAAACTGCACAGG
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           403342 162 +  18854210 aaggggatcacttgagtctaggagtttgaggcttcagtgagctatgacaccgccactgcactctagccagggcaac-agagagagaGAGACAGAAAGAGACAGAGACACACACATTCT--GTCCC------------AAGG----------------------G-AAAAA---AACTTCTAGCTGAGGTCAAAACTGCATAGG
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               456997 557 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     403687 520 -   1411461 I
e aotNan1.NW_018496901v1     157936   0 -    486031 C
e cebCap1.NW_016107755v1     973250   0 -   1771730 C
e calJac3.chr4             30539619   0 + 171630274 C
e nomLeu3.chr1a            75030135 100 + 122973662 M

a score=2660.000000
s hg38.chr6_GL000254v2_alt  1554257 1 +   4827813 -C
s panTro5.chr6             30423323 1 + 175400573 -C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30657541 1 + 173848474 -C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     366349 1 +   2037526 -C
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30919409 1 + 172585720 -C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30209618 1 - 170955103 -C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     458198 1 +   1495729 -C
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     561818 1 -    863181 -C
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29708461 1 -  71996105 -C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     445074 1 -    735854 -C
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     358221 1 -   1829203 -C
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           344252 1 +    515838 -C
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     973250 1 -   1771730 -C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     157936 1 -    486031 -C
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           403504 1 +  18854210 A-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               456997 557 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     403687 520 -   1411461 I
e calJac3.chr4             30539619 0 + 171630274 C
e nomLeu3.chr1a            75030135 100 + 122973662 M

a score=553929.000000
s hg38.chr6_GL000254v2_alt  1554258 64 +   4827813 ATCCTCCCCTGCCCTGCATCCGGCTAGCCCCAACTTACCCATCCAGCCCC--------AAATCCCT-CCTCGT
s panTro5.chr6             30423324 64 + 175400573 ATCCTCCCCTGCCCTGCATCCGGCTAGCCCCAACTTACCCATCCAGCCCC--------AAATCCCT-CCTCGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30657542 64 + 173848474 ATCCTCCCCTGCCCTGCATCCGGCTAGCCCCAACTTACCCATCCAGCCCC--------AAATCCCT-CCTCGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     366350 64 +   2037526 ATCCTCCCCTGCCCTGCATCCGGCTAGCCCCAACTTACCCATCCAGCCCC--------AAATCCCT-CCTCGT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30919410 64 + 172585720 ATCCTCCCCTGCCCTGCATCCGGCTGGCCCCAACTTACCCATCCAGCCCC--------AAATCCCT-CCTCGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30209619 64 - 170955103 ATCCTCCCCTGCCCTGCATCCGGCTGGCCCCAACTTACCCATCCAGCCCC--------AAATCCCT-CCTCGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     458199 64 +   1495729 ATCCTCCCCTGCCCTGCATCCGGCTGGCCCCAATTTACCCATCCAGCCCC--------AAATCCCT-CCTCGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     561819 64 -    863181 ATCCTCCCCTGCCCTGCATCCGGCTGGCCCCAACTTACCCATCCAGCCCC--------AAATCCCT-CCTCAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29708462 64 -  71996105 ATCCTCCCCTGCCCTGCATCCGGCTGGCCCCAACTTACCCATCCAGCCCC--------AAATCCCT-CCTCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     445075 64 -    735854 ATCCTCCCCTGCCCTGCATCCGGCTAGCCCCAACTTACCCATCCAGCCCC--------AAATCCCT-CCTCAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     358222 63 -   1829203 AT-CTCCCCTGCCCTGCATCCGGCTGGCCCCAACTTACCCATCCAGCCCC--------AAATCCCT-CCTCGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30539619 64 + 171630274 ATCCTCCTCTGCCCCTCATCCCGTTAGCTCCAACTTACCCATCCAGTCCT--------AAATCCTA-CCTCGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           344253 65 +    515838 AACCTCCTCTGCCCCCCATCCGGTTAGCCCCAACTTACCCATCCAGCCCC--------AAATGGTAGCCTTGT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     973251 63 -   1771730 ATCCTCCTCTGCCCC-CATCCGGTTAGCCCCAACTTACCTATCCAGCCCC--------AAATCCTG-CCTCGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     157937 64 -    486031 ATCCTCCTCTGCCCCCCATCCTGATAGCTCCAACTTACCCAGCCAGCCCC--------AAATCCTG-CCTCAT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           403505 62 +  18854210 ---------GGGCCCCCA-CAATCTGACCCCAGCTTATTTATCCAGCCCCTGAAAAAGTAAGTCTG-CCTCAC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               456997 557 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     403687 520 -   1411461 I
e nomLeu3.chr1a            75030135 100 + 122973662 M

a score=239649.000000
s hg38.chr6_GL000254v2_alt  1554322 21 +   4827813 CCTACCTAATTCTCTGGCC-AT
s panTro5.chr6             30423388 21 + 175400573 CCTACCTAATTCTCTGGCC-AT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30657606 21 + 173848474 CCTACCTAATTCTCTGGCC-AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     366414 22 +   2037526 CCTACCTAATTCTCTGGCCAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30919474 21 + 172585720 CCTACCTAATTCTCTGGCC-AT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30209683 21 - 170955103 CCTACCTAATTCTCTGGCC-AT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     458263 21 +   1495729 CCTACCTAATTATCTGGCC-AT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     561883 21 -    863181 CCTACCTAATTCTCTGGCC-AT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29708526 21 -  71996105 CCTACCTAATTCTCTGGCC-AT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     445139 21 -    735854 CCTACCTAATTCTCTGGCC-AT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     358285 21 -   1829203 CCTACCTAATTCTCTGGCC-AT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30539683 21 + 171630274 CCTACCTAATTCTCTGGCC-AT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           344318 21 +    515838 CCTACCTAATTCTCTGGCC-AT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     973314 21 -   1771730 CCTACCTAATTCTCTGGCC-AT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     158001 21 -    486031 CCTACCTAATTCTCTGGCC-AT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     404207 21 -   1411461 CCTAGCTAATTCTCCGGCT-GT
i proCoq1.NW_012149775v1   I 520 C 0
s otoGar3.GL873550           403567 21 +  18854210 TCTAGCTAATTCTCCAGCT-GT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               456997 557 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e nomLeu3.chr1a            75030135 100 + 122973662 M

a score=343227.000000
s hg38.chr6_GL000254v2_alt  1554343 26 +   4827813 TAGATACACTGAACCAGGAAGACAGC
s panTro5.chr6             30423409 26 + 175400573 TAGATACACTGAACCAGGAAGACAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30657627 26 + 173848474 TAGATACACTGAACCAGGAAGACAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     366436 26 +   2037526 TAGATACACTGAACCAGGAAGACAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30919495 26 + 172585720 TAGATACACTGAACCAGGAAGACAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30209704 26 - 170955103 TAGATACACTGAACCAGGAAGACAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     458284 26 +   1495729 TAGATACACTGAACCAGGAAGACAGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     561904 26 -    863181 TAGATACACTGAACCAGGAAGACAGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29708547 26 -  71996105 TAGATACACTGAACCAGGAAGACAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     445160 26 -    735854 TAGATACACTGAACCAGGAAGACAGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     358306 26 -   1829203 TAGATACACTGAACCAGGAAGACAGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30539704 24 + 171630274 TAGATACAC--AACCAGGGAGACAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           344339 26 +    515838 TAGATACATTGAACCAGGGAGACAGC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     973335 26 -   1771730 GAGATACACTGAACCAGGGAGACAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     158022 26 -    486031 TAGATACACTGAACCAGGGAGACAGC
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               457554 26 + 123392446 TAGATACACTGAGCCAGGAAGACAGC
i micMur3.chr6             I 557 I 30
s proCoq1.NW_012149775v1     404228 26 -   1411461 TAGATACACTGAGCCAGGAAGACAGC
i proCoq1.NW_012149775v1   C 0 I 743
s otoGar3.GL873550           403588 26 +  18854210 TAGATGCACTGAGCCAGGAAGACAAC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58142990 3735 -  94987271 I
e nomLeu3.chr1a            75030135 100 + 122973662 M

a score=310608.000000
s hg38.chr6_GL000254v2_alt  1554369 34 +   4827813 CCCTTCTTCACTCC-CCACTCTCCACCCATTCCCT
s panTro5.chr6             30423435 34 + 175400573 CCCTTCTTCACTCC-CCACTCTCCACCCATTCCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30657653 34 + 173848474 CCCTTCTTCACTCC-CCACTCTCCACCCATTCCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     366462 34 +   2037526 CCCTTCTTCACTCC-CCACTCTCCACCCATTCCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30919521 34 + 172585720 CCCTTCTTCACTCC-CCACTCTCCGCCCATTCCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30209730 34 - 170955103 CCCTTCTTCACTCC-CCACTCTCCGCCCATTCCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     458310 34 +   1495729 CCCTTCTTCACTCC-CCACTCTCCGCCCATTCCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     561930 34 -    863181 CCTTTCTTTACTCC-CCACTCTCCACCCGTTCCCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29708573 34 -  71996105 CCCTTCTTCACTCC-CCACTCTCCACCCATTCCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     445186 34 -    735854 CCCTTCTTCACTCC-CCACTCTCCACCCATTCCCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     358332 33 -   1829203 CCC-TCTTCACTCC-CCACTCTCCGCCCATTCCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30539728 34 + 171630274 CCCTTCTTCACTCT-CCACTCTCCACCCATGCCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           344365 34 +    515838 CCCTTCTTCACACT-CCACTCTCCACCCATGCCCT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     973361 34 -   1771730 AGCCCCTTCACTCT-CCACTCTCCACCCATGCCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     158048 34 -    486031 CCCTTCTTCACTCT-CCACTTTCCACCCATGCCCT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           403614 35 +  18854210 ATCTCCTTCACCTTGCCACTCTTCATGTGTGCCTT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               457580 30 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     404254 743 -   1411461 I
e nomLeu3.chr1a            75030135 100 + 122973662 M

a score=473789.000000
s hg38.chr6_GL000254v2_alt  1554403 43 +   4827813 TGTACATGCTCTTCTCTCCAGTCCAGCGCATCCTTGAAGGCTT
s panTro5.chr6             30423469 43 + 175400573 TGTACATGCTCTCCTCTCCAGTCCAGCGCATCCTTGAAGGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30657687 43 + 173848474 TGTACATGCTCTCCTCTCCAGTCCAGCGCATCCTTGAAGGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     366496 43 +   2037526 TGTACATGCTCTTCTCTCCAGTCCAGCGCATCCTTGAAGGCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30919555 43 + 172585720 TGTACGTGCTCTTCTCTCCAGTCCAGCTCGTCCTTGAAAGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30209764 43 - 170955103 TGTACGTGCTCTTCTCTCCAGTCCAGCTCGTCCTTGAAAGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     458344 43 +   1495729 TGTACGTGCTCTTCTCTCCAGTCCAGCTCGTCCTTGAAAGCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     561964 43 -    863181 TGTACGTGCTCTTCTCTCCAGTCCAGCTCGTCCTTGAAAGCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29708607 43 -  71996105 TGTACGTGCTCTTCTCTCCAGTCCAGCTCGTCCTTGAAAGCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     445220 43 -    735854 TGTACGTGCTCTTCTCTCCAGTCCAGCTCGTCCTTGAAAGCTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     358365 43 -   1829203 TGTACGTGCTCTTCTCTCCAGTCCAGCTTGTCCTTGAAAGCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30539762 43 + 171630274 TGTACGAGCTCTTCTCTCCAGTCCAGCTCGTCCTTGAAGGCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           344399 43 +    515838 TGTACGAGCTCTTCTCTCCAGTCCAGCTCGTCCTTGAAGGCTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     973395 43 -   1771730 TCTACGAGCTCTTCTCTCCGGTCCAGCTCGTCCTTGAAGGCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     158082 43 -    486031 TGTACGAGCTCTTCTCTCCAGTCCAGCTCGTCCTTGAAGGCTT
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               457610 43 + 123392446 TGTACAGGCTCTTCTCTCAAGCCCAGCTCAGCCTTGAAGGCTT
i micMur3.chr6             I 30 I 830
s otoGar3.GL873550           403649 43 +  18854210 TATACATGTTCTTCTCTCAGGCCCAGCTCATCACTGAAGGCTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     404254 743 -   1411461 I
e nomLeu3.chr1a            75030135 100 + 122973662 M

a score=2683245.000000
s hg38.chr6_GL000254v2_alt  1554446 302 +   4827813 GAATACAATTTGTCCCCTTATCTGTGAGGTGTTTCCTGTACCCATCCCACCTCTGAGTTGAATGTATCCCTC----------CTCCTGCAGCTTTGCATATACTGTATTTCTACAATAGCACTATCACAGTGCTTCATAcagtagcacccc--cc--atccgctaaagatacattcatac---aggagtcccctcaatcctcaggagatgcattccaaaacccccagtggatgtctgaaac----------------------------c--tg----tt-tctcctacacatacacacttgtaataaagtt-----tataaagtaggcacagaaatagattaacaat---------------------------------------------------------------------------------------------aataaca----------caac
s panTro5.chr6             30423512 302 + 175400573 GAATACAATTTGTCCCCTTATCTGTGAGGTGTTTCCTGTACCCATCCCACCTCTGAGTTGAATGTATCCCTC----------CTCCTGCAGCTTTGCATATACTGTATTTCTACAATAGCACTATCACAGTGCTTCATAcagtagcacccc--cc--atccgctaaagacacattcatac---aggagtcccctcaatcctcaggagatgcattccaaaacccccagtggatgtctgaaac----------------------------c--tg----tt-tctcctacacatacgcacttgtaataaagtt-----tataaagtaggcacagaaatagattaacaat---------------------------------------------------------------------------------------------aataaca----------caac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30657730 302 + 173848474 GAATACAATTTGTCCCCTTATCTGTGAGGTGTTTCCTGTACCCATCCCACCTCTGAGTTGAATGTATCCCTC----------CTCCTGCAGCTTTGCATATACTGTATTTCTACAATAGCACTATCACAGTGCTTCATAcagtagcacccc--cc--atccgctaaagacacattcatac---aggagtcccctcaatcctcaggagatgcattccaaaacccccagtggatgtctgaaac----------------------------c--tg----tt-tctcctacacatacgcacttgtaataaagtt-----tataaagtaggcacagaaatagattaacaat---------------------------------------------------------------------------------------------aataaca----------caac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     366539 302 +   2037526 GAATACAATTTGTCCCCTTATCTGTGAGGTGTTTCCTGTACCCATCCCATCTCTGAGTTGAATGTATCCCTC----------CTCCTGCAGCTTTGCATATACTGTATTTCTACAATAGCACTATCACAGTGCTTCATAcagtagcacccc--cc--atccgctaaagatacattcatac---aggagtcccctcaatcctcaggagatgcattcaaaaacccccagtggatgtctgaaac----------------------------c--tg----tt-tctcctacacatacacactcgtaataaagtt-----tataaagtaggcacagaaatagattaacaat---------------------------------------------------------------------------------------------aataaca----------caac
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30919598 314 + 172585720 GAATACAATTTGTCCCCTTATCTGTGAGGAGTTTCCTGCGCCCATCCCATCTCTGAGTTGAATGTATCCCTCCTCTGGAGAGCTCCTGCAGCTTTGCATATACTGTATTTCTACGATAGCACTATCACACTGCTTCATACAGTAGCACCCC--CC--ATTCGCTAAAGATCCATTCGTAc---aggagtcccctcaatcctcaggagatgcattccaaaaaccccagtggatgtctgaaac----------------------------ctatg----tt-tctcctacacatacacacttgtaataaagtt-----tataaagcaggcacagaaatagattaacaat---------------------------------------------------------------------------------------------aataaca----------caac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30209807 314 - 170955103 GAATACAATTTGTCCCCTTATCTGTGAGGAGTTTCCTGCGCCCATCCCATCTCTGAGTTGAATGTATCCCTCCTCTGGAGAGCTCCTGCAGCTTTGCATATACTGAATTTCTACGATAGCACTATCACCCTGCTTCATACAGTAGCACCCC--CC--ATTCGCTAAAGATCCATTCGTAc---aggagtcccctcaagcctcaggagatgcattccaaaaaccccagtggatgtctgaaac----------------------------ctatg----tt-tctcctacacatacacacttgtaataaagtt-----tataaagcaggcacagaaatagattaacaat---------------------------------------------------------------------------------------------aataaca----------caac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     458387 314 +   1495729 GAATACAACTTGTCCCCTTATCTGTGAGGAGTTTCCTGTGCCCATCCCATCTCTGAGTTGAATGTATCCCTCCTCTGGAGAGCTCCTGCAGCTTTGCATATACTGAATTTCTACAATAGCACTATCACACTGCTTCATACAGTAGCACTCC--CC--ATTCGCTAAAGATCCATTCGTAc---aggagtcccctcaatcctcaggagatgcattccaaaaaccccagtggatgtctgaaac----------------------------ctatg----tt-tctcctacacatatagacttgtaataaagtt-----tataaagcaggcacagaaatagattaacaat---------------------------------------------------------------------------------------------aataaca----------caac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     562007 313 -    863181 GAATACAATTTGTCCCCTTATCTGTGAGGAGTTTCCTGTGCCCATCCCATCTCTGAGTTGAATGTATCCCTCCTCTGGAGAGCTCCTGCAGCTTTGCATATACTGTATTTCTACGATAGCACTATCACACTGCTTCATACAGTAGCAC-CC--CC--GTTCGCTAAAGATCCATTCGTAc---aggagtcccctcaatcctcaggagatgcattccaaaaaccccagtggatgtctgaaac----------------------------ctgtg----tt-tctcctacacatacacacttgtaataaagtt-----tataaagcaggcacagaaatagattaacaat---------------------------------------------------------------------------------------------aataaca----------caac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29708650 314 -  71996105 AAATACAATTTGTCCCCTTATCTGTGAGGAGTTTCCTGTGCCCATCCCATCTCTGAGTTGAATGTATCCCTCCTCTGGAGAGCTCCTGCAGCTTTGCATATACTGTATTTCTACGATAGCACTATCACACTGCTTCATACAGTAGCACCCC--CC--ATTCGCTAAAGATCCATTCGTAc---aggagtcccctcaatcctcaggagatgcattccaaaaaccccagtggatgtctgaaac----------------------------ctatg----tt-tctcctacacatatacacttgtaataaagtt-----tataaagcaggcacagaaatagattaacaat---------------------------------------------------------------------------------------------aacaaca----------caac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     445263 313 -    735854 GAATACAATTTGTCCCCTTGTCTGTGAGGAGTTTCCTGTTTCCATCCCATCTCTGAGTTGAATGTATCCCTCCTCTGGAGAGCTCCTGCAGCTTTGCATATACTGTATTTCTACGATAGCACTATCACACTGCTTCATACAGTAGCA-CCC--CC--ATTCGCTAAAGATCCATTCGTAc---aggagtcccctcaatcctcaggagatgcattccaaaaaccccagtggatgcctgaaac----------------------------ctatg----tt-tctcctacacatacacacttgtaataaagtt-----tataaagcaggcacagaaatagattaacaat---------------------------------------------------------------------------------------------aataaca----------caac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     358408 314 -   1829203 GAATACAATTTGTCCCCTTATCTGTGAGGAGTTTCCTGTGCCCATCCCATCTCTGAGTTGAACATATCCCTCCTCTGGAGAGCTCCTGCAGCTTTGCATATACTGTATTTCTACGATAGCACTATCACACTGCTTCAGACAGTAGCACCCC--CC--ATTTGCTAAAGACCCATTCGTAc---aggagtctcctcaatcctcaggagatgcattccaaaaaccccagtggatgtctgaaac----------------------------ctgtg----tt-tctcctacacatacacacttgtaataaagtt-----tataaagcaggcacagaaatagattaacaat---------------------------------------------------------------------------------------------aataaca----------caac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30539805 314 + 171630274 GAATACAATTTGTCCCCTTATCTGTGAAGTCTTTCTTGTGCCCATCCCATCGCTGAGTTGAATGTATCCCTCCTCTGGAGAGCTCCTGCAGCTTTGCATACACTGTATTTCTATGATCACACTATCACACTCCTTCATAGAGTAGCACCCCCACC--ATCTGCTGAAGATACATTCATACAGGaggagtcccctcaatcctcaggagacacattctaagactcccagtgg-tgtccgaaac----------------------------ctatg----tt-tctcctacac--acacactcataataaagtt-----tataaagtaggcacagaa--agattaacaat---------------------------------------------------------------------------------------------aataaca----------gaac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           344442 312 +    515838 GAATACAATTTGTCCCCTTATCTGTGAAGTCTTTCTTGTGCCCATCCCATCGCTAAGTTGAATGTATCCCTCCTCTGGAGAGCTCCTAAAGCTTTGCATACACTGTATTTCTATGATAACACTATCACACTGCTTCATACAGTAGCACCCC--CC--ATCCGCTGAAAATACATTCATAc---aggagtccccacaatcctcaggagatgcattctaagactcccagtgg-tgtctgaaac----------------------------ctatgtttctt-tctcctacacatacacacttataataaactt-----tataaagcaggcacagaa--agattagcaat---------------------------------------------------------------------------------------------aataaca----------g---
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     973438 313 -   1771730 GAATACAATTTGTCCCCTTATCTGTGAAGTCTTTCTTGTGCCCATCCCATCACTGAGTTGAATGTAACCCTCCTCTGGAGAGCTCCTACAGCTTTGCATACATTATATTTCTATGATCACACTACCACACTGCTTCATACAGTGGCACCCCT-CC--ATCCACTGAAAATACATTCATAc---aggagtcccctcaatcctcaggagatgcattctaagactcccagtgg-tgtctgaaac----------------------------ctacgtttctt-tctcctacacatacacacttataataaactt-----tataaagcaggcacagaa--agattaacaat---------------------------------------------------------------------------------------------aataaca----------g---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     158125 310 -    486031 GAATACAATTTGTCCCCTTATCTGTGAAGTCTTTCTTGTGCCCATCCCATCGCTGAGTTGAATGTATCCCTCCTCTGGAGAGCTCCTGCAGCTTTGCATACACTTTATTTCTATGATCACACTATCACACTGCTTCATACAGTAGCACCCCC-CC--ATCCGCTGAAGATACATTCATACAGGaggagtcccctcaatcctcaggagatgcattctaagactcccagtgg-tgtcagaaac----------------------------ctatg----tt-tctcctacacatacacacttataataaactt-------taaagcaggcacagaa--agattaacaat---------------------------------------------------------------------------------------------aataaca----------g---
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           403692 406 +  18854210 ----------CGT-CTCTTACCTGTGAAGTCCTTCCTGTGCCTATCCTACCTCCGAATTGAATGAATTCTTCCCCTGGTTAGCTCCTGCAGCTCTGCATACACTGCATTTCTACAATAGCAGTATCACACTGCTTCATAcagtagctcctc--ccttatctgctagacat------atgc---------------------------------tctaagatccccagtggatgcctgaaacagcagataataccaagccctgtatgtaactatg----ttctttcccatacatacacacctgtaataaagtttaacttataaatcaggtatagtaagagattaacaatagctagaggctcggcgcctgtggctcaagcggctaaggcgccagccacatacacctaaggtggcgggttcgaaaccccagccgggacccgccaaacaacaatgatggctgcaac
i otoGar3.GL873550         C 0 I 170
e micMur3.chr6               457653 830 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     404254 743 -   1411461 I
e nomLeu3.chr1a            75030135 100 + 122973662 M

a score=247474.000000
s hg38.chr6_GL000254v2_alt  1554748 32 +   4827813 agaataactataacaatataccgtaataaaag
s panTro5.chr6             30423814 32 + 175400573 agaataactataacaatatactgtaataaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30658032 32 + 173848474 agaataactataacaatatactgtaataaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     366841 32 +   2037526 agaataactataacaacatactgtaataaaag
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30919912 32 + 172585720 aaaataactataactatatactgtaataaaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30210121 32 - 170955103 aaaataactataactatatactgtaataaaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     458701 28 +   1495729 aaaataacta----tatatactgtaataaaag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     562320 32 -    863181 aaaataactataactatatactgtaataaaag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29708964 32 -  71996105 aaaataactataactatatactgtaataaaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     445576 32 -    735854 aaaataactataactatatactgtaataaaag
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     358722 28 -   1829203 aaaataacta----tatatactgtaataaaag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30540119 32 + 171630274 aaaataattttaacaatataccataataaaag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           344754 32 +    515838 aagagaattttaacactataccgtaataaaag
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     973751 32 -   1771730 aacggaattttaacactataccataataaaag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     158435 32 -    486031 aatggaattttaacactatactgtaataaaag
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           404268 32 +  18854210 agaacaattgtaacaatatgctataataaaag
i otoGar3.GL873550         I 170 C 0
e micMur3.chr6               457653 830 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     404254 743 -   1411461 I
e nomLeu3.chr1a            75030135 100 + 122973662 M

a score=2316778.000000
s hg38.chr6_GL000254v2_alt  1554780 225 +   4827813 ttatatgcatgtggtctctctctctctcaaactatc---ttgtactgtacttacccttcttgtgatgaAGGAACagtgggagggcaagagatttcatcatgctactcagaaca--atgcacatctaaaacttatgaattgtttacttctggaattttctgtttactgtctttgggctgaggttgaccatgggtaacggaaaccacggaaaactaagctatggataagtgg
s panTro5.chr6             30423846 225 + 175400573 ttatatgcatgtggtctctctctctctcaaactatc---ttgtactgtacttactcttcttgtgatgaAGGAACagtgggagggcaagagatttcatcatgctactcagaaca--atgcacatctaaaacttataaattgtttacttctggaattttctgtttactgtctttgggctgaggttgaccatgggtaacggaaaccatggaaaactaagccatggataagtgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30658064 225 + 173848474 ttatatgcatgtggtctctctctctctcaaactatc---ttgtactgtacttactcttcttgtgatgaAGGAACagtgggagggcaagagatttcatcatgctactcagaaca--atgcacatctaaaacttataaattgtttacttctggaattttctgtttactgtctttgggctgaggttgaccatgggtaacggaaaccatggaaaactaagccatggataagtgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     366873 225 +   2037526 ttatatgcatgtggtctctctctctctcaaactatc---ttgtactgtacttacccttcttgtgatgaAGGAACagtgggagggcaagagatttcatcatgctactcagaaca--atgcacatctaaaacttatgaattgtttacttctggaattttctgtttactgtctttgggctgaggttgaccatgggtaacggaaaccacggaaaactaagccatggataagtgg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75030235 223 + 122973662 ttatatacatgtgg--tctctctctctcaaactatc---ttgtactgtactcacccttcttgtgatgaAGGAACagtgggagggcaagagattttatcatgctactcagaaca--atgcacatctaaaacttatgaattgtttacttctggaattttctgtttactgtctttgggctgaggttgaccatgggtaacggaaaccacggaaaactaagccatggataagtgg
i nomLeu3.chr1a            M 100 C 0
s rheMac8.chr4             30919944 223 + 172585720 ttatatgcatgtgg--tctctctctctcaaaatacc---ttgtactgtactcacccttcttgtgatgaAGGAACagtgggagggcaagagatttcatcacgctactcagaaca--atgcacatgtaaaacttacgaattgtttacttctggaattttctgttcactgtctttgggctgaggttgaccacgtgtaacggaaaccacggaaaactaagccatggataagtgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30210153 223 - 170955103 ttatatgcatgtgg--tctctctctctcaaaatacc---ttgtactgtactcaccGTTCTTATGATGAAGGAACagtgggagggcaagagatttcatcacgctactcagaaca--atgcacatgtaaaacttacgaattgtttacttctggaattttctgttcactgtctttgggctgaggttgaccacgtgtaacggaaaccacggaaaactaagccatggataagtgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     458729 223 +   1495729 ttatatgcatgtgg--tctctctctctcaaaatacc---ttgtactgtactcacccttcttatgatgaAGGAACagtgggagggcaagagatttcatcacgctactcagaaca--atgcacatgtaaaacttacgaattgtttacttctggaattttctgttcgctgtctttgggctgaggttgaccacgtgtaacggaaaccacggaaaactaagccatggataagtgg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     562352 223 -    863181 ttatatgcatgtgg--tctctctctctcaaaatatc---ttgtactgtactcacccttcttatgatgaAGGAACagtgggagggaaagagatttcatcatgctactgagaaca--atgcacatataaaacttatgaattgtttacttctggaattttctgttcactgtctttgggctgaggttgaccacgggtaacggaaaccacggaaaactaagccatggataagtgg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29708996 223 -  71996105 tgatatgcatgtgg--tctctctctctcaaaatatc---ttgtactgtactcacccttcttatgatgaAGCAACagtgagagggaaagagatttcatcacgctactgagaaca--atgcacatataaaacttatgaattgtttacttctggaattttctgttcactctctttgggctgaggttgaccacgggtaacggaaaccacggaaaactaagccatggataagtgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     445608 223 -    735854 ttatatgcatgtgg--tctctctctctcaaaatatc---ttgtactgtactcacccttcttatgatgaAGGAACagtgggagggaaagagatttcatcatgctactgagaaca--atgcacatataaaacttatgaattgtttacttctggaattttctgttcactgtctttgggctgaggttgaccacgggtaacggaaaccacagaaaactaagccatggataagtgg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     358750 223 -   1829203 ttatatgcatgtgg--tctctctctctcaaaatatc---ttgtactgtactcaccctccttgtgatgaAGGAACagtgggagggcaagagatttcatcatgctactcagaaca--atgcacatataaaacttatgaattgtttacttctggaattttctgttcattgtctttgggctgaggttgaccacgggtaacggaaaccacggaaaactaagccatggataagtgg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30540151 221 + 171630274 ttatatgcctgtgg----tctctcttttgaaatatc---ttgtactgtactctcccttcttgtgatgCAGGAACagtgggatggtaagagatttcatcatgttactcagaaca--atgcacatctaaaacttatgaattgtttacttctgaaatttgctgtttactgtctttggactgaggttgacggtgggtaactaaaaccatggaaaacggagccatggataagtgg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           344786 211 +    515838 ttacatgcctgtgg----tctctcttttgaagtatc---ttgtactgtactctcccttcttgtgatgCAGGAACagtgggatggcaagagatttcatcatgctactcagaaca--atgcacatctagaacttatgcattgtttacttctgaaatttgctgtttactctctttggactgaggttg----------actgaaaccatggaaaatgaagccataaataagtgg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     973783 217 -   1771730 ttatatgcctgtag----tctctcttttgaaatatc---ttgtactgtactcacccttcttgtgatggaggaacagtgggatggcaagagatttcatcatgctactcagaaca--atgcacatctaaaacttgtgaa----ttacttctgaaattttctgtttactgtctttggactgaggttgatggtgggtaactgaaaccatggaaaatgaagccatggataaTTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     158467 221 -    486031 ttatatgcctgtgg----cctctcttttgaaatatc---ttgtactgtactctcccttcttgtgatgCAGGAACagtgggatggcaagtgatttcatcatgctactcagaaca--atgcacatctaaaagttatgaattgtttacttctgaaatttgctgtttactttctttggactgaggttgacggtgggtaactgaaaccatggaaaatgaagccatggataagtgg
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           404300 223 +  18854210 ttgtacaaatgtgg------tgtctctcaaaatatcttattgtactgtactcacccttcttgtgttgaAgggacagcagtatgacacaaacttttatcatactactcagaacagcatgca-atttaaaacttacaaattgtttatttatagatgtttccatttaatatctttgaaccagtattgaccatgggtaactaaaaccacggaaaaggaaaacacagataaaagg
i otoGar3.GL873550         C 0 I 414
e micMur3.chr6               457653 830 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     404254 743 -   1411461 I

a score=13600.000000
s hg38.chr6_GL000254v2_alt  1555005 1 +   4827813 C
s panTro5.chr6             30424071 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30658289 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     367098 1 +   2037526 C
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75030458 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30920167 1 + 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30210376 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     458952 1 +   1495729 C
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     562575 1 -    863181 C
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29709219 1 -  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     445831 1 -    735854 C
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     358973 1 -   1829203 C
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30540372 1 + 171630274 C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           344997 1 +    515838 C
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     974000 1 -   1771730 C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     158688 1 -    486031 C
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           404937 1 +  18854210 c
i otoGar3.GL873550         I 414 C 0
e micMur3.chr6               457653 830 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     404254 743 -   1411461 I

a score=2119578.000000
s hg38.chr6_GL000254v2_alt  1555006 186 +   4827813 tgtaattgatatttttatctgtcttctctccca-ccagaatgtgaacccaaaggtcatgcctcactgacctttttatctccaatatctggcacaaagtaggggg-tctgcaaatgtttgtgaaatgaatgaCCTCCTCTAATTCCAGAGCCCTGCCATC---TCCATTCTTCCC------CCTTTCACTACACACCC
s panTro5.chr6             30424072 186 + 175400573 tgtaattgatatttttatctgtcttctctccca-ccagaatgtgaacccaaaggtcatgcgtcactgacctttttatctccaatatctggcacaaagtaggggg-tctgcaaatgtttgtgaaatgaatgaCCTCCTCTAATTCCAGAGCCCTGCCATC---TCCATTCTTCCC------CCTTTCACTACACACCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30658290 186 + 173848474 tgtaattgatatttttatctgtcttctctccca-ccagaatgtgaacccaaaggtcatgcgtcactgacctttttatctccaatatctggcacaaagtaggggg-tctgcaaatgtttgtgaaatgaatgaCCTCCTCTAATTCCAGAGCCCTGCCATC---TCCATTCTTCCC------CCTTTCACTACACACCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     367099 183 +   2037526 tgtaattgatatttttatctgtcttctctccca-ccagaatgtgaacccaaaggtcatgcctcactgacctttttatctccaatatctggcacaaagta-gggg-tctgcaaatgtttgtgaaatgaatgaCCTCCTCTAATTCCAGAGCCCTGCCATC---TCCATTCTTCCC------CCTTTCA-TACACA-CC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75030459 186 + 122973662 tgtaattgatatttttatctgtcttctctccca-tcagaatgtgaacccaaaggtcatgcctcactgacctttttatctccaatatctggcacaaagtaggggg-tctgcaaatgtttgtgaaatgaatgaCCTCCCCTAATTCCAGAGCCCTGCCATC---TCCATTCTTCCC------CCTTTCACCACACACCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30920168 181 + 172585720 tgtaattgataattttatc-----tctctccca-ccagaatgtgaacccaaaggtcatgcctcactgacctttttatctccaatatctggcacaaagtaggggg-tctgcaaatgtttgtgaaattaatgaCCTCCTCTAATTCCAGAGCCCTGCCATC---TCCATTCTTTCC------CCTTTCACCACGCACCC
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             30210377 181 - 170955103 tgtaattgataattttatc-----tctctccca-ccagaatgtgaacccaaaggtcatgcctcactgacctttttatctccaatatctggcacaaagtaggggg-tctgcaaatgtttgtgaaattaatgaCCTCCTCTAATTCCAGAGCCCTGCCATC---TCCATTCTTTCC------CCTTTCACCACGCACCC
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     458953 181 +   1495729 tgtaattgataattttatc-----tctctccca-ccagaatgtgaacccaaaggtcatgcctcactgacctttttatctccaatatctggcacaaagtaggggg-tctgcaaatgtttgtgaaattaatgaCCTCCTCTAATTCCAGAGCCCTGCCATC---TCCATTCTTTCC------CCTTTCACCACGCACCC
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     562576 181 -    863181 tgtaattgatatttttatc-----tctctccca-ccagaatgtgaacccaaaggtcatgcctcactgacctttttatctccaatatctggcacaaagtaggggg-tctgcaaatgtttgtgaaattaatgaCCTCCTCTAATTCCAGGGCCCTGCCATC---TCCATTCTTCCC------CCTTTCACCACACACCC
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29709220 181 -  71996105 tgtaattgatatttttctc-----tctctccca-ccagaatgtgaacccaaaggtcatgcctcactgacctttttatctccaatatctggcacaaagtaggggg-tctgcaaatgtttgtgaaattaatgaCCTCCTCTAATTCCAGAGCCCTGCCATC---TCCATTCTTTCC------CCTTTCACCACACACCC
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1     445832 181 -    735854 tgtaattgatatttttatc-----tctctccca-ccagaatgtgaacccaaaggtcatgcctcactgacctttttatctccaatatctggcacaaagtaggggg-tctgcaaatgtttgtgaaattaatgaCCTCCTCTAATTCCAGGGCCCTGCCATC---TCCATTCTTCCC------CCTTTCACCACACACCC
i manLeu1.NW_012107142v1   C 0 I 919
s colAng1.NW_012115577v1     358974 181 -   1829203 tgtaattgaaatttttatc-----tctctccca-ccagaatgtgaacccaaaggtcatgcctcactgacctttttatctccagtatctggcacaaagcaggggg-tctgcaaatgtttgtgaaattaatgaCCTCCTCTAATTCCAGAGCCCTGCCATC---TCCATTCTGCCC------CCTTTCACCACACACCC
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30540373 187 + 171630274 tgtaattgatatttttatctgccttctctcccaaccagaatgtaaacccaagggtcatgcctcactgatctttttatctccaatacccggtacaaagtagaggg-tctgcaaatgtttatgaaattaatACGCTCCTCTAATTCCAGAGCCTTGGCATC---TCCATTCTCCCC------CCTTTCACCACACACCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           344998 187 +    515838 tataattgatatttttatctgtcttctctcccagccagaatggaaacccaagggtcatgcctcactgatgtttttatctccaatatccggtacaaagtagaggg-tctgcaaatgtttgtgaaattaatATGCTCCTCTAATTCCAGAGCCTTGGCATC---TCCATTCTCCTC------CCTTTCACCACACACCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     974001 187 -   1771730 tgtaattgatatttttatctgtcttctctcccaaccagaatgtaaacccaaaggtcatgcctcactgatgtttttatctccaatatccggtacaaagtagaggg-tctgcaaatgtttgtgaaattaatATGCTCCTCTAATTCCAGAGCCTTGGCATC---TCCATTCTCCCC------CCTTTCATCACACACCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     158689 193 -    486031 tgtaattgatatttttatctgtcttctctcccaaccagaatgtaaacccaagggtcatgcctcactgatctttttatctccaatatcacgtacaaagtagaggg-tctgcaaatgtttgtgaaattaatATGCTCCTCTAATTCCAGAGCCTTGGCATC---TCCATTCTCCGCCACACACATTTCACCACACACCC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     404997 186 -   1411461 tgtaattaatatttttacctatctcctcccccaacaagaatgtgaacccaagggccatgcctcattgatc--tttatctccagtatctggcacaaagtaggggg-tctgtaaacgttagtagaattcatgTCACCCTCTGATTGCAGAGCCCTGCCATCTTCTCCATTCTCCCC------ACTCTCGCTGCACTC--
i proCoq1.NW_012149775v1   I 743 C 0
s otoGar3.GL873550           404938 183 +  18854210 tataactaatatttttacctatctctccccacaacaaaaatgtgaatccaagggccatacctcattgatc--tttacctccagaatctggcacaaagtaaggggttctgt----gttagtagaattaatgTCATCCTCTGATTCCGGAGCCCCGTCATCCTTTCCATTCTCTCC------CCTCTCACCACACAC--
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               457653 830 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I

a score=191573.000000
s hg38.chr6_GL000254v2_alt  1555192 16 +   4827813 C-CCTTTCCCACATTAA
s panTro5.chr6             30424258 16 + 175400573 C-CCTTTCCCACATTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30658476 16 + 173848474 C-CCTTTCCCACATTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     367282 16 +   2037526 C-CCTTTCCCACATTAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75030645 17 + 122973662 CTCCTTTCCCACATTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30920350 16 + 172585720 C-CCTTTCCCACATTAA
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30210559 16 - 170955103 C-CCTTTCCCACATTAA
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     459135 16 +   1495729 C-CCTTTCCCACATTAA
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     562758 16 -    863181 C-CCTTTCCCACATTAA
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29709402 16 -  71996105 C-CCTTTCCCACGTTAA
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1     446932 16 -    735854 C-CCTTTCCCACATTAA
i manLeu1.NW_012107142v1   I 919 C 0
s colAng1.NW_012115577v1     359156 16 -   1829203 T-CCTTTCCCACATTAA
i colAng1.NW_012115577v1   I 1 C 0
s calJac3.chr4             30540560 16 + 171630274 C-ACTTTCCCACATTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           345185 16 +    515838 C-ACTTTCCCACATTAA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     974188 16 -   1771730 C-ACTTTCCCACATTAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     158882 16 -    486031 C-ACTTTCCCACATTAA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     405183 16 -   1411461 C-CCTTTCCCACTTCAC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           405121 16 +  18854210 T-CCTTTCCCACTTTAC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               457653 830 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I

a score=1361843.000000
s hg38.chr6_GL000254v2_alt  1555208 100 +   4827813 AATTCTGCTTCAGCAGCAGGCTTCCAGGGCTCTCTTT-AGATTAGACATTCTTGCCCACACACATTACCTAGATCTCTCTTGGCCTCCCTCCACACACACA
s panTro5.chr6             30424274 100 + 175400573 AATTCTGCTTCAGCAGCAGGCTTCCAGGGCTCTCTTT-AGATTAGACATTCTTGCCCACACACATTACCTAGATCTCTCCTGGCCTCCCTCCATACACACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30658492 100 + 173848474 AATTCTGCTTCAGCAGCAGGCTTCCAGGGCTCTCTTT-AGATTAGACATTCTTGCCCACACACATTACCTAGATCTCTCCTGGCCTCCCTCCATACACACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     367298 100 +   2037526 AATTCTGCTTCAGCAGCAGGCTTCCAGGGCTCTCTTT-AGATTAGACATTCTTGCCCACACACATTACCTAGATCTCTCCTGGCCTCCCTCCATACACACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75030662 100 + 122973662 AATTCTGCTTCAGCAGCAGGCTTCCAGGGCTCTCCTT-AGATTAGACATTCTTGGCCACACACATTACCTAGATCTCTCCTGGCCTCCCTCCACATACACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30920366 100 + 172585720 AATTCTGCTTCAGCAGCAGGCTTCCAGGGCTCTCCTT-AGATTAGACATTCTTGGCCACACACATTACCTAGATCTCTGCTGGCCTCCCTCCACACACACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30210575 100 - 170955103 AATTCTGCTTCAGCAGCAGGCTTCCAGGGCTCTCCTT-AGATTAGACATTCTTGGCCACACACATTACCTAGATCTCTGCTGGCCTCCCTCCACACACACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     459151 100 +   1495729 AATTCTGCTTCAGCAGCAGGCTTCCAGGGCTCTCCTT-AGATTAGACATTCTTGGCCACACACATTACCTAGATCTCTGCTGGCCTCCCTCCACACACACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     562774 100 -    863181 AATTCTGCTTCAGCAGCAGGCTTCCAGGGCTCTCCTT-AGATTAGACATTCTTGGCCACACACATTACCTAGATCTCTGCTGGCCTCCCTCCACACACACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29709418 101 -  71996105 AATTCTGCTTCAGCAGCAGACTTCCAGGGCTCTCCTTAAGATTAGACATTCTTGGCCACACACATTACCTAGATCTCTGCTGGCCTCCCTCCACACACACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     446948 100 -    735854 AATTCTGCTTCAGCAGCAGGCTTCCAGGGCTCTCCTT-AGATTAGACATTCTTGGCCACACACATTACCTAGATCTCTGCTGGCCTCCCTCCACACACACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     359172  95 -   1829203 AATTCTGCTTCAGCAGCAGGCTTCCAGGGCTCTCCTT------AGACATTCTTGGCCACATACATTACCTAGATCTCTGCTGGCCTCCCTCCACACACACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30540576 100 + 171630274 AATTCTGCTTCAGCAGCAGGCTCCCAGGGCTATCCTT-ACATTAGACATTCTTGGCCACACACATTACCTAGATCTCTCCTGGTCTCCCTCTGCATGCACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           345201 100 +    515838 AATTCTGCTTCGGCGGCAGGCTCCCAGGGTTCTCCTT-AGATTAGACACTCTTGGCCACACACATTACCTAGATCTCTTCTGGTCTACCTCTGCATGCACA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     974204 100 -   1771730 AATTCTGCTTCGGCAGCAGGCTCCCAGGGCTCTCCTT-AGATTAGACATTCTTGGCCACACACATTACCTAAATCTCTCCTGGTCTCCCTCTGCATGCATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     158898 100 -    486031 AATTCTGCTTCAGCAGCAGGCTCCCAGGGCTCTCCTT-AGATTAGACATTCTTGGCCACACACATTACCTAGATCTCTCCTGGTCTCCCTCTGCATGCACA
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               458483 100 + 123392446 AATTCTGCTTGAGCAGCAGGCTTCCAGGGCTCTCCGT-GGATTATACATTCTTGGACACAAGAATTACCCAGATCTCCCCCTCCCTCCCTCCACACACACA
i micMur3.chr6             I 830 I 125
s proCoq1.NW_012149775v1     405199 100 -   1411461 AATTCTGCTTGAGCAGCAGGCTTCCGGGGCTCTCCTT-GGATTAGACATTCTTGGCCACAAACATTACCCAGATCTCCCCCACCCTCCCTCcacacacaca
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           405137 100 +  18854210 AATTCTGCTTTAGCATTAGGCTGCCTGAGTTCTCCTT-CAATTAGACATTCTTGGCCATGAACATTACCCAGATCTCCCCCTACCTAGCTCCACAAACACA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58142990 3735 -  94987271 I

a score=26996.000000
s hg38.chr6_GL000254v2_alt  1555308 2 +   4827813 CA
s panTro5.chr6             30424374 2 + 175400573 CA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30658592 2 + 173848474 CA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     367398 2 +   2037526 CA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75030762 2 + 122973662 CA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30920466 2 + 172585720 CA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30210675 2 - 170955103 CA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     459251 2 +   1495729 CA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     562874 2 -    863181 CA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29709519 2 -  71996105 CA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     447048 2 -    735854 CA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     359267 2 -   1829203 CA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30540676 2 + 171630274 CA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           345301 2 +    515838 CA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     974304 2 -   1771730 CA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     158998 2 -    486031 CA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     405299 2 -   1411461 ca
i proCoq1.NW_012149775v1   C 0 I 166
s otoGar3.GL873550           405237 2 +  18854210 TA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               458583 125 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I

a score=380065.000000
s hg38.chr6_GL000254v2_alt  1555310 34 +   4827813 ATTTTGGGGGGAAGAACAAAATTCCATTTCTATA
s panTro5.chr6             30424376 34 + 175400573 ATTTTGGGGGGAAGAACAAAATTCCATTTCTATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30658594 34 + 173848474 ATTTTGGGGGGAAGAACAAAATTCCATTTCTATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     367400 33 +   2037526 ATTTT-GGGGGAAGAACAAAATTCCATTTCTATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75030764 34 + 122973662 ATTTTGGGGGGAAGAACAAAATTCCATGTCTATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30920468 34 + 172585720 ATTTTGGGGGGAAAAACAAAATTCCATTTCTATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30210677 34 - 170955103 ATTTTGGGGGGAAGAACAAAATTCCATTTCTATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     459253 34 +   1495729 ATTTTGGGGGGAAGAACAAAATTCCATTTCTATC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     562876 34 -    863181 ATTTTGGGGGGAAGAACAAAATTCCATTTCTATC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29709521 34 -  71996105 ATTTTGGGGGGAAGAACAAAATTCCATTTCTATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     447050 34 -    735854 ATTTTGGGGGGAAGAACAAAATTCCATTTCTATC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     359269 34 -   1829203 ATTTTGGGGGGAAGAACAAAATTCCATTTCTATC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30540678 34 + 171630274 ATTTTGGGGGGAAGGACAAAATTCCACTTCTATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           345303 34 +    515838 ATTTTGGGGGGAAGGACAAAATTCCATTTCTATC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     974306 34 -   1771730 ATTTTGGGAGGAAGGACAAAATTCCATTTCTATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     159000 34 -    486031 ATTTTGGGGGTAAGGACAAAATCCCATTTCTATC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           405239 34 +  18854210 ATTTTGAGGGGAAGGTCAACATTCCATTTCTACT
i otoGar3.GL873550         C 0 I 87
e micMur3.chr6               458583 125 + 123392446 I
e mm10.chr17               58142990 3735 -  94987271 I
e proCoq1.NW_012149775v1     405301 166 -   1411461 I

a score=352017.000000
s hg38.chr6_GL000254v2_alt  1555344 26 +   4827813 AAGCTGGC-AAAATC-TAATTCATCCTG
s panTro5.chr6             30424410 26 + 175400573 AAGCTGGC-AAAATC-TAATTCATCCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30658628 26 + 173848474 AAGCTGGC-AAAATC-TAATTCATCCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     367433 26 +   2037526 AAGCTGGC-AAAATC-TAATTCATCCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75030798 26 + 122973662 AAGCTGGC-AAAATC-TAATTCATCCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30920502 27 + 172585720 AAGCTGGC-AAAATCTTAATTCATCCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30210711 26 - 170955103 AAGCTGGC-AAAATC-TAATTCATCCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     459287 26 +   1495729 AAGCTGGC-AAAATC-TAATTCATCCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     562910 26 -    863181 AAGCTGGC-AAAATC-TAATTCATCCTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29709555 26 -  71996105 AAGCTGGC-AAAATC-TAATTCATCCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     447084 26 -    735854 AAGCTGGC-AAAATC-TAATTCATCCTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     359303 26 -   1829203 AAGCTGGC-AAAATC-TAATTCATCCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30540712 26 + 171630274 AAGTTGGC-AAAATC-TAATTCATCCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           345337 27 +    515838 AAGTTGGCAAAAATC-TAATTCATCCCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     974340 26 -   1771730 AAGTTGGC-AAAATC-TAATTCATCCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     159034 26 -    486031 AAGTTGGC-AAAATC-TAATTCATCCCA
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               458708 26 + 123392446 aagctggC-AAGTTA-TAATTCATCCTG
i micMur3.chr6             I 125 C 0
s proCoq1.NW_012149775v1     405467 26 -   1411461 aagctggC-AAGTTC-TAATTCATCCTG
i proCoq1.NW_012149775v1   I 166 C 0
s otoGar3.GL873550           405360 26 +  18854210 aaactgAC-AAGTTC-TAATTCATTTTG
i otoGar3.GL873550         I 87 C 0
e mm10.chr17               58142990 3735 -  94987271 I

a score=2257574.000000
s hg38.chr6_GL000254v2_alt  1555370 179 +   4827813 ATGCCAGCC--AATTTATGTTTTTG-TCTTCTCAAACCAA---CTTCCCATTCTCCGTGTCTTTTCTATTCTGATCCTGGGGGGG---------TCCAAGTCTGAAGTCATTCCAAGAAGCCTCAATACAGACCATGGACTCTCTTCGGGGGTTTGCAGTGTCTTCTGTGGTGGTCACACACAATCTGAGTCCA
s panTro5.chr6             30424436 178 + 175400573 ATGCCCGCC--AATTTATGTTTTTG-TCTTCTGAAACCAA---CTTCCCATTCTCCGTGTCTTTTCTATTCTGATCCT-GGGGGG---------TCCAAGTCTGAAGTCATTCCAAGAAGCCTCAATACAGACCATGGACTCTCTTCGGGGGTTTGCAGTGTCTTCTGTGGTGGTCACACACAATCTGAGTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30658654 178 + 173848474 ATGCCCGCC--AATTTATGTTTTTG-TCTTCTGAAACCAA---CTTCCCATTCTCCGTGTCTTTTCTATTCTGATCCT-GGGGGG---------TCCAAGTCTGAAGTCATTCCAAGAAGCCTCAATACAGACCATGGACTCTCTTCGGGGGTTTGCAGTGTCTTCTGTGGTGGTCACACACAATCTGAGTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     367459 175 +   2037526 ATGCCAGCC--AATTTATGTTTTTG-TCTTCTGAAACCAA---CTTCCCATTCTCCGTGTCTTTTCTATTCTGATCCT--GGGGG---------TCCAAGTCTGAAGTCATTCCAAGAAGCCTCAATACACACCATGGACTCCTTC--GGGGTTTGCAGTGTCTTCTGTGGTGATCACACACAATCTGAGTTCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75030824 178 + 122973662 ATGCCAGCC--AAATTATGTTTTTG-TCTTCTGAAACCAA---ATTCCCATTCTCCGTGTCTTTTCTATTCTGATCCT-GGGGGG---------TCCAAGTCTGAAGTCATTCCAAGAAGCCTCAATTCAGACCATGGACTCTCTTCGGGGGTTTGCAGTGTCTTCTGTGGTGGTCACACACAATCTGAGTCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30920529 178 + 172585720 ATGCCAGCC--AAATTATGTTTTTG-TTTTCTAAAACCAA---CTTCCCATTCTCCGTGTCTTTTCTATTCTGATCCT-GGGGGG---------TCCAAGTCAGAAGTCCTCCCAAGAAGCCTCAATTCAGACCATGGACTCTCTTCGGGGGTTTGCAGTGTCTTCTGTGGTGGTTACACACAATCTGAGTCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30210737 178 - 170955103 ATGCCAGCC--AAATTATGTTTTTG-TTTTCTAAAACCAA---CTTCCCATTCTCCGTGTCTTTTCTATTCTGATCCT-GGGGGG---------TCCAAGTCAGAAGTCCTCCCAAGAAGCCTCAATTCAGACCATGGACTCTCTTCGGGGGTTTGCAGTGTCTTCTGTGGTGGTTACACACAATCTGAGTCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     459313 178 +   1495729 ATGCCAGCC--AAATTATGTTTTTG-TTTTCTAAAACCAA---CTTCCCATTCTCCGTGTCTTTTCTATTCTGATCCT-GGGGGG---------TCCAAGTCTGAAGTCCTCCCGAGAAGCCTCAATTCAGACCATGGACTCTCTTCGGGGGTTTGCAGTGTCTTCTGTGGTGGTTACACACAATCTGAGTCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     562936 178 -    863181 ATGCCAGCC--AAATTATGTTTTTG-TTTTCTAAAACCAA---CTTCCCATTCTCCGTGTCTTTTCTATTCTGATCCT-GGGGGG---------TCCAAGTCTGAAGTCCTCCCAAGAAGCCTCAATTCAGACCATGGACTCTCTTCAGGGGTTTGCAGTGTCTTCTGTGGTGGTCACACACAATCTGAGTCCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29709581 178 -  71996105 ATGCCAGTC--AAATTATGTTTTTG-TTTTCTAAAACCAA---CTTCCCATTCTCCGTGTCTTTTCTATTCTGATCCT-GGGGGG---------TCCAAGTCTGAAGTCCTCCCGAGAAGCCTCAATTCAGACCATGGACTCTCTTCGGGGGTTTGCAGTGTCTTCTGTGGTGGTCACACACAATCTGAGTCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     447110 178 -    735854 ATGCCAGCC--AAATTATGTTTTTG-TTTTCTAAAACCAA---CTTCCCATTCTCCGTGTCTTTTCTATTCTGATTCT-GGGGGG---------TCCAAGTCTGAAGTCCTCCCAAGAAGCCTCAATTCAGACCATGGACTCTCTTCGGGGGTTTGCAGTGTCTTCTGTGGTGGTCACACACAATCTGAGTCCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     359329 178 -   1829203 ATGCCAGCC--AAATTATGTTTTTG-TTTTCTAAAACCAA---CTTCCCATTCTCCGTGTCTTTTCTATTCTGATCCT-GGGGGG---------TCCAAGTCTGAAGTCCTCCCAAGAAGCCTCAATTCAGACCATGGACTCTCTTCGGGGGTTTGCAGTGTCTTCTGTGGTGGTCACACACAAtttgagtcca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30540738 179 + 171630274 ATGCCAGCC--AAATTACACTTTTG-TCTTCTAAAACCAA---CTTCCCATTCTCTATGTCTTTTCTATTCAGATCCA-GGGGGG--------ATCCAAGTCTGAAGTCACATCAACAAGCCTCAATTCAGACCACGGGCTCTCTTCTGAGGTTTGCAGTGTCCTCTGTGGTGGTCACACTCAATCTGAGTCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           345364 179 +    515838 ACACCAGCC--AAATTACGCTTTTG-TCTTCTAAAACCAA---CTTCCCATTCTCTGTGTCTTTTCTATTCAGATCCT-GGGATG--------ATCCAAGTCTGAAGTCACACCAAGAAGCCTCAATTCAGACCACGGGCTCTCTTCTGAGATTTGCAGTGTCCTCTGTGGTGGTCACAGCCAATCTGAGTCCA
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     974366 179 -   1771730 ACACCAGCC--AAATTATGCTTTTG-TCTTCTAAAACCAA---CTTCCCATTCTCTGTGTCTTTTCTATTCAGATCCT-GGGGGG--------ATCCAAGTCTGAAGTCACACCAAGAAGCCTCAGTTCAGACCACGGGCTCTCGTCTGAGGTTTGCAGTGTCCTCTGTGGTGGTCACATCCAATCTGAGTCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     159060 179 -    486031 ATGCCAGCC--AAATTAAGCTTTTG-TCCTCTAAAACCAA---CTTCCCATTCTCTGTGTCTTTTCTATTCAGATCCT-GGGGGA--------ATCCAAGTCTGAAGTCACACCAAGAAGCCTCAATTCAGACCATGGGCTCTCTTCTGAGGTTTGCAGTGTCCTCTGTGGTGGTCACACCCAatctgagtcca
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               458734 179 + 123392446 ATGCCAGCC--AAATTATGCTTTTGCTTTCCCAAAGACAATTCTTTCCCATTCTCCATGTCTTGTCTACTCTGAGCCT-AAAAG----------TCCAAGTCTGAAGTCACCCCAGGAAGCCTCAATTCATACCAAAGGTACTTTTCTGAGATTTGAA--GTCTTCTATGATGGTCAGATCCAgtttgagtcca
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     405493 179 -   1411461 ATGCCAGCC--AAATTATGCTTTTGCTTTCCCAAAAACAACTCCTTCCCATTCTCCATGTCTTTTCTATTCTGAGCCT-AAAAA----------TCCAAGTCTGAAGTCACCCAGAGAAGCCTCAATTCAGACCACAGGTACTTTTCTGAGGTTTGAA--GTCTTCTATGATGATCAGATCCAgtctgagtcca
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           405386 175 +  18854210 ATACCAGCC--TAA-AATGCTCTTG-TTTACCAAAACTAACCCCTCTCCATTCTCCATGTCTTGTCTATTCTGATTCT-AAAAG----------TTCAAGCCTGAAGTCACCCCAAAAAGCCTCAATCCA-ACCAAA---CCTCTTCTGAGGTTTGCAGTGTCTTCTGTGATGGTCAGATCCAGTCTGAGTCCA
i otoGar3.GL873550         C 0 I 634
s mm10.chr17               58146725 174 -  94987271 ATGCCAATCTTAAGCTAAGCCTTTG-TTTGCTACAAATGT---CTCCCC-------GTGTATTTTCCATTGTGATCCT-GGGAGCTGGATTTCCCCCCCCCCCCATCCCCCTCGCAGAAGCATTCACTTAAA-----AGGTTTTACCTGAGGTTTTCGGAGT--TCTGCAGTAA-CAGATGCAGTCTCAGTCCT
i mm10.chr17               I 3735 C 0

a score=731634.000000
s hg38.chr6_GL000254v2_alt  1555549 58 +   4827813 ACctgttactcccctgcaggaagtgatatctaagaagtcacccactgccttaggcctt
s panTro5.chr6             30424614 58 + 175400573 ACctgttactcccctgcaggaagtgatatctaagaagtcacccactgccttaggcctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30658832 58 + 173848474 ACctgttactcccctgcaggaagtgatatctaagaagtcacccactgccttaggcctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     367634 58 +   2037526 ACctgttactcccctgcaggaagtgatatctaagaagtcacccactgccttaggcctt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75031002 58 + 122973662 ACCTGTTACTCCCCTGCAGGAAGTGATATCTAAGaagtcacccactgccttgggcctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30920707 58 + 172585720 ACctgttactcccctgcaggaagtgatatctaagaagtcacccactgccttgggcctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30210915 58 - 170955103 ACCTGTTACTCCCCTGCAGGAAGTGATATCTAAGaagtcacccactgccttgggcctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     459491 58 +   1495729 ACCTGTTACTCCCCTGCAGGAAGTGATATCTAAGaagtcacccactgccttgggcctt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     563114 58 -    863181 ACctgttactcccctgcaggaagtgatatctaagaagtcacccactgccttgggcctt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29709759 58 -  71996105 ACCTCTTACTCCCCTGCAGGAAGTGATATCTAAGaagtcacccactgccttgggcctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     447288 58 -    735854 ACCTGTTACTCCTCTGCAGGAAGTGATATCTAAGaagtcacccactgccttgggcctt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     359507 58 -   1829203 acctgttactcccctgcaggaagtgatatctaagaagtcacccactgccttgggcctt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30540917 58 + 171630274 ACTTGTTTGTACCTTGCAGGAAGCGGTATCTAAGAAGTCATCCACTGCCTTGGGCCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           345543 58 +    515838 ACTTGTTTGTCCCTTGCAGGAAGTGGGATCTAAGAAGTCATCCACTGCCTTGGGCCTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     974545 58 -   1771730 ACTTGTTTGTCCCTTGCAGGAAGTGGCATCTAAGAAGTCATCCACTGCCTTGGGCCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     159239 58 -    486031 acttttttgtcccttgcaggaagtggtatctaagaagtcacccactgccttgggcctt
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               458913 57 + 123392446 gtctgctattccactgcaggaaatgacgtctaagaagtcacccactgccccaggact-
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     405672 57 -   1411461 gtctgctattccactgcaggaaatgacatctaagaagtcacccactgccctgggact-
i proCoq1.NW_012149775v1   C 0 C 0
s mm10.chr17               58146899 51 -  94987271 GCTTGTGATTCTCTTGTAGCAA-------CTAACAAGTCATTCCCCACCTTTGTACTT
i mm10.chr17               C 0 C 0
e otoGar3.GL873550           405561 634 +  18854210 I

a score=223324.000000
s hg38.chr6_GL000254v2_alt  1555607 13 +   4827813 cagtctccttacc
s panTro5.chr6             30424672 13 + 175400573 cagtctccttacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30658890 13 + 173848474 cagtctccttacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     367692 13 +   2037526 cagtctccttacc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75031060 13 + 122973662 cagtctccttacc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30920765 13 + 172585720 cagtctccttacc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30210973 13 - 170955103 cagtctccttacc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     459549 13 +   1495729 cagtctccttacc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     563172 13 -    863181 cagtctccttacc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29709817 13 -  71996105 cagtctccttacc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     447346 13 -    735854 cagtctccttacc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     359565 13 -   1829203 cagtctccttacc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30540975 13 + 171630274 CAGTCTCCTTACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           345601 13 +    515838 CAGTCTCCTTACC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     974603 13 -   1771730 CAGTCTCCTTACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     159297 13 -    486031 cagtctccttacc
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               458970 13 + 123392446 cagtttccttacc
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     405729 13 -   1411461 cagtttccttacc
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           406195 13 +  18854210 cAGTTTCTTTACT
i otoGar3.GL873550         I 634 C 0
s mm10.chr17               58146950 13 -  94987271 CAGTTTCCTTACC
i mm10.chr17               C 0 I 2162

a score=3869290.000000
s hg38.chr6_GL000254v2_alt  1555620 306 +   4827813 tcttaacaaggggaaaatattttgccaagtttaccaggctatttgaggttgaggcaaagtcaca-taagTACGAGTGTCTCATtagcaaaaagctctataaaaata----ctatgaaagagcacaggagccaatgtgaaaagagctcccaacagccaaagccacagtaatttgagcaacaaaattaagtagtattggattataaaccaaagtataaaataaatgtccctgagtc----------------------------------tacactg-----------aaattaatgattgaataaatt-------------------------------------------------------------aataaattggggagaagagagaaacaaatcttccatgcagaataactgc
s panTro5.chr6             30424685 306 + 175400573 tcttaacaaggggaaaatattttgccaagtttaccaggctatttgaggttgaggcaaggtcaca-taagtacgagtgtctcattagcaaaaagctctataaaaata----ctatgaaagagcacaggagccaatgtgaaaagagctcccaacagccaaagccacagtaatttgagcaacaaaataaagtagtattggattataaaccaaagtataaaataaatgtccctgagtc----------------------------------tacactg-----------aaattaatgattgaataaatt-------------------------------------------------------------aataaatgggggagaagagagaaacaaatcttccatgcagaataactgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30658903 306 + 173848474 tcttaacaaggggaaaatattttgccaagtttaccaggctatttgaggttgaggcaaggtcaca-taagtacgagtgtctcattagcaaaaagctctataaaaata----ctatgaaagagcacaggagccaatgtgaaaagagctcccaacagccaaagccacagtaatttgagcaacaaaataaagtagtattggattataaaccaaagtataaaataaatgtccttgagtc----------------------------------tacactg-----------aaattaatgattgaataaatt-------------------------------------------------------------aataaatgggggagaagagagaaacaaatcttccatgcagaataactgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     367705 293 +   2037526 tcttaacaaggggaaaatattttgccaagtttaccaggctatttgaggttgaggcaaggtcaca-taagtacgagtgtctcattagcaaaaagctctataaaaata----ctatgaaagagcacaggagccaatgtgaaaagagctcccaacagccaaagccacagtaatttgagcaacaaaataaagtagtattggattataaaccaaagtataaaataaatgtccctgagtc----------------------------------tacactg-----------aaattaatgattgaataaatt-------------------------------------------------------------aataaatgggggagaagagagaaacaaatctt-------------ctgc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75031073 306 + 122973662 tcttaacaaggggaaaatattttgccaagtttaccaggctatttgaggttgaggcaaggtcaca-taagtacaagtgtctCACtaacaaaaagctctataaaaata----ctaagaaggagcacaggagccaatgtgaaaagagctcccaacagccaaagccacagtaatttgagcaacaaaataaagtagtattggattataaaccaaagtataaaataaatgtccctgagtc----------------------------------tacactg-----------aaattaatgattgaataaatt-------------------------------------------------------------aataaatgggggagaagagagaaacaaatcttccatgcagaataactgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30920778 304 + 172585720 tcttaacaaggggaaaatattttgccaagtttaccaggctatttgaggttcaggcaaggtcaca-taagtacaagcgtctcattagcaaaaagctctataaaaata----ctatgaaggagcacaggagccaaagtgaaaagagctcccaacagccaaagccgcagtaatttgagcaacaaaataaagtagtattggattataaaccaaagtataaaataaatgtcca--agtc----------------------------------tacactg-----------aaattaatcactgaataaatt-------------------------------------------------------------aataaatggcggagaagagagaaacaaatattccatgcagaataactgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30210986 304 - 170955103 tcttaacaaggggaaaatattttgccaagtttaccaggctatttgaggttcaggcaaggtcaca-taagtacaagcgtctcattagcaaaaagctctataaaaatA----CTATGaaggagcacaggagccaaagtgaaaagagctcccaacagccaaagccgcagtaatttgagcaacaaaataaagtagtattggattataaaccaaagtataaaataaatgtcca--agtc----------------------------------tacactg-----------aaattaatcactgaataaatt-------------------------------------------------------------aataaatggcggagaagagagaaacaaatattccatgcagaataactgc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     459562 304 +   1495729 tcttaacaaggggaaaatattttgccaagtttaccaggctatttgaggttcaggcaaggtcaca-taagtacaagcgTCTCATtagcaaaaagctctataaaaata----ctatgaaggagcacaggagccaaagtgaaaagagctcccaacagccaaagccgcagtaatttgagcaacaaaataaagtagtattggattataaaccaaagtataaaataaatgtccc--agtc----------------------------------tacaatg-----------aaattaatcactgaataaatt-------------------------------------------------------------aataaatggtggagaagagagaaacaaatattccatgcagaataactgc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     563185 306 -    863181 tcttaacaaggggaaaatattttgccaagtttaccaggctatttgaggttcaggcaaggtcaca-taagtacaagcgtctcattagcaaaaagctctataaaaata----ctatgaaggagcacaggagccaaagtgaaaagagctcccaacagccaaagccgcagtaatttgagcaacaaaataaagtagtattggattataaaccaaagtataaaataaatgtccctgagtc----------------------------------tacactg-----------aaattaatcactgaataaatt-------------------------------------------------------------aataaatgggggagaagagagaaacaaatcttccatgcaaaataactgc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29709830 306 -  71996105 tcttaacaaggggaaaatattttgccaagtttaccaggctatttgagattcaggcaaggtcaca-taagtacaagcgtctcatTAGcaaaaagctctacaaaaata----ctatgaaggagcacaggagccaaagtgaaaagagctcccaacagccaaagccgcagtaatttgagcaacaaaataaagtagtattggattataaaccaaagtataaaataaatgtccctgagtc----------------------------------tacactg-----------aaattaatcactgaataaatt-------------------------------------------------------------aataaatgggggagaagagagaaacaaatcttccatgcaaaacaactgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     447359 306 -    735854 tcttaacaaggggaaaatattttgccaagtttaccaggctatttgaggttcaggcaaggtcaca-taagtacaagtgtctcattagcaaaaagctctataaaaata----ctatgaaggagcacaggagccaaagtgaaaagagctcccaacagccaaagctgcagtaatttgagcaacaaaataaagtagtattggattataaaccaaagtataaaataaatgtccctgagtc----------------------------------tacactg-----------aaattaatcactgaataaatt-------------------------------------------------------------aataaatgggggagaagagagaagcaaatcttccatgcaaaataactgc
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     359578 306 -   1829203 tcttaacaatgggaaaatattttgccaagtttaccaggctatttgaggttcaggcaaggtcaca-taagtacaagcATCTCATtagcaaaaagctctataaaaata----ctatgaaggagcacagcagccaaagtgaaaagagctcccaacagccaaagccgcagtaatttgagcaacaaaataaagtagtattggattataaaccaaagtataaaataaatgtccctgagtc----------------------------------tacactg-----------aaattaatgactgaataaatt-------------------------------------------------------------aataaatgggggagaagaaagaaacaaatcttccatgcagaataactgc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30540988 355 + 171630274 TCTTAACAAGGGGAAAATATTTTGCCAAGTTTACCAGGCTACTTGAGGTTCAAGCAAGGTCACATTAAGTATAAGTGTCTCATTAGCAAAAAGCTCTATAAAAATACATGCTGGGaaggagcacaggagccagtgtgaaac-agctcccaacagccaaagctgcaataatctgagcaacaaaataaagtggtactgaattataaaccaaagcataaaataaatgtccctgagttttattaaattaatgatttaatttaataaaatggatacattaatgaattaattaaattaatgatttaataaatt-------------------------------------------------------------aataaatgcagaagaagagagaagcaaatcttccatgcagaataactgc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           345614 309 +    515838 TCTTAACAAAGGGAAAACATTTTGCCAAGTTTACCAGGCTACTTGAGGTTCAAGCAAGGTCACATTAAGTATAAGTGTCTCATTAGCAAAAAGCTCTATAAAAATACATGCTGGGaaggagcacaggagccaatgtgaaac-agctcccaacagccaaagctgcaataatctgagcaacaaaataaagtagtactgaattataaaccaaagcataaaataaatgtctctgagtc----------------------------------tacactg-----------aaattaatgatttaataaatt-------------------------------------------------------------aataaatgggggagaagagagaaac-aatcttccatgcagaataactgc
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     974616 303 -   1771730 TCTTAACAAGGGGAAAATATTTTGCCAAGTTTACCAGGCTACTTGAGGTTCAAGCAAGGTCACATTAAGTATAAGTGTCTCATTAGCAAAAAGCTCTATAAAAATACATGCTGGGaaggagcacaggagccaatgtgaaac-agctcccaacagccaaagctgcaataatctgagcaacaaaataaagtagtgctgaattataaaccaaagcataaa-------tgtccgagtc----------------------------------tacactg-----------aaattaatgatttaataaatt-------------------------------------------------------------aataaatgggggagaagagagaaacaaatcttccatgcagaataactgc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     159310 310 -    486031 tcttaacaaggggaaaatattttgccaagtttaccaggctacttgaggttcaagcaaggtcacattaagtataagtgtctcattagcaaaaagctctataaaaatacaTGCTGGGaaggagcacaggagccaatgtgaaac-agctcccaacagccaaagctgcaataatctgagcaacaaaataaagtagtactgaattataaaccaaagcataaaataaatgtccctgagtc----------------------------------tacactg-----------aaattaatgatttaataaatc-------------------------------------------------------------aataaatgggggagaggagagaaacaaatcttccatgcagaataactgc
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               458983 302 + 123392446 tcttaactaggaggaaatgtgttgcaaagttcatcaggtggtttgaacttgaagtgaggtcaca-taagtaaaagcatttccataacaaaaagccctataaaaatacaTGATAAGaaggagcacagg-gccaatgtgaaag-agttccctatgctcaaagctgcaataatttgagcaacaaaataaaggagt-----attataacccaaagtataaaataaatatccctga-tc----------------------------------tacactg-----------atataaataatttaataaatt-------------------------------------------------------------aataaatgggagagaagagagaaacaaatcttccacgcagaagaatccc
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     405742 304 -   1411461 tctcaacaaggggaaaatgttttgccaagttcaccaggctgtttgaacttcaagtgaggtcaca-taagttaaagcatttccataacaaaaagctctataaaaatacaTGCTAGGaaggagcacaggagccaatgtgaaag-agttcccaatggccgaagctgcaataatttgagcaacaaaataaaggagt-----attataacccaaagtataaaataaatatccctgagtc----------------------------------tacgctg-----------ataaaaataatttaataaatt-------------------------------------------------------------aataaatgaaggagaagagagaaacaaatcttccacacagaagaatccc
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           406208 351 +  18854210 TCTTAACAAAGAGAAAAT-------------------GCTATCTGAAGTTCAAGCAAGGTCACA-TAAGTAAAAGCATTTCAACaagaaaatgctatataaaaatacaggctaggaaggagcacatgagccaatgtgaaag-agttctcaatggccaaagctgaaataatttgagcaacaaaataaagtaatactagattataacccaaagcataaaataaatatccctgagtc----------------------------------tacactg-----------atataaataactgaataaactattattcatcaataattattaattatttatataatttataattattatttataaataactgaataaattaatggggggaaagagagaaatcttctgtacacagtaattcc
i otoGar3.GL873550         C 0 I 184
e mm10.chr17               58146963 2162 -  94987271 I

a score=114267.000000
s hg38.chr6_GL000254v2_alt  1555926 8 +   4827813 aaacaata
s panTro5.chr6             30424991 8 + 175400573 aaataata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30659209 8 + 173848474 aaataata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     367998 8 +   2037526 aaataata
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75031379 8 + 122973662 aaataata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30921082 8 + 172585720 aaataata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30211290 8 - 170955103 aaataata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     459866 8 +   1495729 aaataata
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     563491 8 -    863181 aaataata
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29710136 8 -  71996105 aaataata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     447665 8 -    735854 aaataata
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     359884 8 -   1829203 aaataata
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30541343 8 + 171630274 aaataata
i calJac3.chr4             C 0 I 390
s saiBol1.JH378341           345923 8 +    515838 aaataata
i saiBol1.JH378341         C 0 I 299
s cebCap1.NW_016107755v1     974919 8 -   1771730 aaataata
i cebCap1.NW_016107755v1   C 0 I 1048
s aotNan1.NW_018496901v1     159620 8 -    486031 aaacaata
i aotNan1.NW_018496901v1   C 0 I 320
s micMur3.chr6               459285 8 + 123392446 gaataata
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     406046 8 -   1411461 aaataata
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           406743 8 +  18854210 aaacaaca
i otoGar3.GL873550         I 184 C 0
e mm10.chr17               58146963 2162 -  94987271 I

a score=170556.000000
s hg38.chr6_GL000254v2_alt  1555934 24 +   4827813 atatgtagatacttgccctcaaga
s panTro5.chr6             30424999 24 + 175400573 atatgtagatacttgccctcaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30659217 24 + 173848474 atatgtagatacttgccctcaaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     368006 24 +   2037526 atatgtagatacttgccctcaaga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75031387 24 + 122973662 atacgtagatacttgccctcaaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30921090 24 + 172585720 atatgtaggtccttgccctcaaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30211298 24 - 170955103 atatgtaggtccttgccctcaaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     459874 24 +   1495729 atatgtaggtccttgccctcaaga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     563499 24 -    863181 atatgtaggtccttgccctcaaga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29710144 24 -  71996105 atatgtaggtccttgccctcaaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     447673 24 -    735854 atatgtaggtccttgccctcaaga
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     359892 24 -   1829203 atatgttggtccttgacctcaaga
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378341           346230 23 +    515838 acgtgtagatacttgcctttaag-
i saiBol1.JH378341         I 299 C 0
s micMur3.chr6               459293 23 + 123392446 -aatgtagatacttgcctctaaag
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     406054 23 -   1411461 -tatgtagatatttgcccctaagg
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           406751 19 +  18854210 -a----tgatggctgcaaccaaaa
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58146963 2162 -  94987271 I
e aotNan1.NW_018496901v1     159628 320 -    486031 I
e cebCap1.NW_016107755v1     974927 1048 -   1771730 I
e calJac3.chr4             30541351 390 + 171630274 I

a score=105992.000000
s hg38.chr6_GL000254v2_alt  1555958 14 +   4827813 agggggaatataac
s panTro5.chr6             30425023 14 + 175400573 agggggactataac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30659241 14 + 173848474 agggggactataac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     368030 14 +   2037526 agggggaatataac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75031411 14 + 122973662 agggggaatataac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30921114 14 + 172585720 agggggaatataac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30211322 14 - 170955103 agggggaatataac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     459898 14 +   1495729 agggggaatataac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     563523 14 -    863181 agggggaatataac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29710168 14 -  71996105 agggggaatataac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     447697 14 -    735854 agggggaatataac
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     359916 14 -   1829203 agggggaatataac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30541741 12 + 171630274 AAGGGGTAGATA--
i calJac3.chr4             I 390 C 0
s micMur3.chr6               459316 13 + 123392446 a-ggggaacttaac
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     406077 14 -   1411461 agggggagcataac
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           406770 14 +  18854210 aaaaaaaaaatagc
i otoGar3.GL873550         C 0 I 191
e mm10.chr17               58146963 2162 -  94987271 I
e saiBol1.JH378341           346253  0 +    515838 C
e aotNan1.NW_018496901v1     159628 320 -    486031 I
e cebCap1.NW_016107755v1     974927 1048 -   1771730 I

a score=88725.000000
s hg38.chr6_GL000254v2_alt  1555972 12 +   4827813 tcttggctccct
s panTro5.chr6             30425037 12 + 175400573 tctcggctccct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30659255 12 + 173848474 tctcggctccct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     368044 12 +   2037526 tctcggctccct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75031425 12 + 122973662 tctcagctccct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30921128 12 + 172585720 tctcggctccct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30211336 12 - 170955103 tctcggctccct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     459912 12 +   1495729 tctcggctccct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     563537 12 -    863181 tctcggctccct
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29710182 12 -  71996105 tctcggctccct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     447711 12 -    735854 tctcggctccct
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     359930 12 -   1829203 tcttggctccct
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30541753 11 + 171630274 -CTTGGccctaa
i calJac3.chr4             C 0 C 0
s micMur3.chr6               459329 12 + 123392446 tccccactccct
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     406091 12 -   1411461 tccccattcctt
i proCoq1.NW_012149775v1   C 0 C 0
e mm10.chr17               58146963 2162 -  94987271 I
e saiBol1.JH378341           346253  0 +    515838 C
e otoGar3.GL873550           406784 191 +  18854210 I
e aotNan1.NW_018496901v1     159628 320 -    486031 I
e cebCap1.NW_016107755v1     974927 1048 -   1771730 I

a score=318661.000000
s hg38.chr6_GL000254v2_alt  1555984 31 +   4827813 aggtatgggctgcacttagtgacttccttct
s panTro5.chr6             30425049 31 + 175400573 aggtatgggctgcacttagtgacttccttct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30659267 31 + 173848474 aggtatgggctgcacttagtgacttccttct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     368056 31 +   2037526 aggtatgggctgcacttagtgacttccttct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75031437 31 + 122973662 aggtatgggctgcacttagtgacttccttct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30921140 31 + 172585720 aggtatgggctgcacttagtgacttccttct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30211348 31 - 170955103 aggtatgggctgcacttagtgacttccttct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     459924 31 +   1495729 aggtatgggctgcacttagtgacttccttct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     563549 31 -    863181 aggtatgggctgcacttagtgacttccttct
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29710194 31 -  71996105 aagtatgggctgcacttagtgacttccttct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     447723 31 -    735854 aggtatgggctgcacttagtgacttccttct
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     359942 31 -   1829203 aggtatgggctgcacttagtgacttccttct
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30541764 31 + 171630274 aggtatgggctgcctttgtggacctccgttc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           346253 27 +    515838 --gtatgggctgcacttagtgacttcc--tt
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496901v1     159948 29 -    486031 aggtatgggctgcacttagtgacttcc--tt
i aotNan1.NW_018496901v1   I 320 C 0
s micMur3.chr6               459341 30 + 123392446 gggtatgggct-cacatacctacttccttcc
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     406103 31 -   1411461 gggtatgggctgcacatagcgacttccttcc
i proCoq1.NW_012149775v1   C 0 C 0
e mm10.chr17               58146963 2162 -  94987271 I
e otoGar3.GL873550           406784 191 +  18854210 I
e cebCap1.NW_016107755v1     974927 1048 -   1771730 I

a score=2088949.000000
s hg38.chr6_GL000254v2_alt  1556015 199 +   4827813 aaagaggacaatacacgcaaagagtggaaaagag-actaactgtacagtggagaaacctgaaaaacactatctcacccaa---------atcaatattaagtca---------------taaatcatgt---tagtacatgcccttgatacgatgggatgataat--ggcaatctacctctgtggtcttcctcccagttacccataagcccagtcttaggagaaaaaca
s panTro5.chr6             30425080 199 + 175400573 aaagaggacaatacacgcaaagagtggaaaagag-actaactgtacagtggagaaacctgaaaaacactatctcacccaa---------atcaatattaagtca---------------taaatcatgt---tagtacatgcccttgacacgatgggatgataat--ggcaatctacctctgtggtcttcctcccagttccccataagcccagtcttaggagaaaaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30659298 199 + 173848474 aaagaggacaatacacgcaaagagtggaaaagag-actaactgtacagtggagaaacctgaaaaacactatctcacccaa---------atcaatattaagtca---------------taaatcatgt---tagtacatgcccttgacacgatgggatgataat--ggcaatctacctctgtggtcttcctcccagttacccataagcccagtcttaggagaaaaaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     368087 199 +   2037526 aaagaggacaatacacgcaaagagtggaaaagac-actaactgtacagtggagaaacctgaaaaacactatctcacccaa---------atcaatattaagtca---------------taaatcatgt---tagtacatgcccttgacacgatgggatgataat--ggcaatctacctctgtggtcttcctcccagttacccataagcccagtcttaggagaaaaaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75031468 199 + 122973662 aaagaggacaatacacgcaaagagtggaaaagag-actaattttacagtggagaaacctgaaaaacactatctcagccaa---------atcaatattaagtca---------------taaatcatgt---tagtacatgcccttgacacgatgggatgaaaat--ggcaatctacctctgtggtcttcctcccagttacccgtaagcccagtctcaggagaaaaaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30921171 197 + 172585720 aaagagggcaatacatgcaaacagtagaaaagag-agtaac--tacagtggagaaacctgaaaaacactctctcagccaa---------atcaacattaagtta---------------taaatcatgt---tagtacaagcccttgacacgatgggatgaaaac--cgcaatccacctctgtggtcttcctcccagttacgcataagcccagtcttaggagaaaaacg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30211379 197 - 170955103 aaagagggcaatacatgcaaacagtagaaaagag-agtaac--tacagtggagaaacctgaaaaacactctctcagccaa---------atcaacattaagtta---------------taaatcatgt---tagtacaagcccttgacacgatgggatgaaaac--cgcaatccacctctgtggtcttcctcccagttacgcataagcccagtcttaggagaaaaacg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     459955 197 +   1495729 aaagagggcaatacatgcaaacagtagaaaagag-agtaac--tacagtggagaaacctgaaaaacactctctcagccaa---------atcaacattaagtta---------------taaatcatgt---tagtacaagcccttgacacgatgggatgaaaat--cgcaatccacctctgtggtcttcctcccagttacgcataagcccagtcttaggaaaaaaacg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     563580 199 -    863181 aaagatgacaatacatgcaaagagtggaaaagag-agtaactgtacagtggagaaacctgaaaaacactatctcagccaa---------atcaacattaagtta---------------taaatcatgt---tagcacaagcccttgacacgatgggacgaaaat--ggcaatccacctctgtggtcttcctcccagttacacataagcccggtctcaggagaaaaaca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29710225 199 -  71996105 aaagatgacaatacatgcaaagagtggaaaagag-agtaactgtacagtggagaaacctgaaaaacactatctcagccaa---------atcaacattaagtta---------------taaatcatgt---tagtacaagcccttgacacgatgggacgaaaat--ggcaatccacctctgtggtattcctcccagttacgcataagcccggtctcaggagaaaaaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     447754 199 -    735854 aaagatgacaatacatgcaaagagtggaaaagag-agtaactgtacagtggagaaacctgaaaaacactatctcagccaa---------atcaacattaagtta---------------taaatcatgt---tagtacaagcccttgacacgatgggacgaaaat--ggcaatccacctctgtggtattcctccgagttacgcataagcccggtctcaggagaaaaaca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     359973 199 -   1829203 aaagatgacagtacatgcaaagagtggaaaagag-ggtaactgtacagtggagaaatctgaaaaacactatctcagccaa---------atcaacattaagtta---------------taaatcatgt---tagtacatgcccttgacacgatgggacgaaaat--ggcaatccacctctgtggtcttcctcccagttacgcataagcccagacttaggagaaaaaca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30541795 201 + 171630274 aaagaggacagtacatgcaaacagtgaaaaaaagaagtaactttacagtgaagaaacctgaaaaaca--ctctcagccaa--------gatcaatattaagtca---------------taaatcaggttgatagtacatgccc-tgacacaatgggatgaaaat--ggtaatctacctctatgttcttcctcccagttattcataagcctaatctaaggagaaaaaca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           346280 199 +    515838 caagaggacaatacatgcaaagagtggaaaacag-agtaactgtacagtggagaaacctgaaaaaca----ctcagccaa--------gatcgatattaagtca---------------taaatcatgttgatagtacatgcccttgacacaatgggatgaaaat--ggtaatctacctctgtgttcttcctcccagttactcataagcctagtctaaggagaaaaaca
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496901v1     159977 205 -    486031 caagaggacaatatatgcaaagagtggaaaagag-agtaactgtacagtggagaaacctgaaaaacactctctcagccaa--------gatcaatattaagtca---------------taaatcatgttgatcgtacatgcccttgacacaatgagatgaaaattaggtaatctacttctgtgttcttcctcccagttactcgtaagcctagtctaaggagaaaaaca
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               459371 207 + 123392446 aaagggtacagt--atgcaaagagtggaaaacag-aataactttacaatggacaaacctgacacacactatctcagccaagtgatcaagatcaacattaagtca---------------taaaccatgctgatagtatgtgcccttga-atggtgtgatgaacac--ggcaatccacctctgtggtcttcttctcaatacccc-taagaccagccttaggagaaaaaca
i micMur3.chr6             C 0 I 991
s proCoq1.NW_012149775v1     406134 205 -   1411461 aaagagtacagt--atgcaaagagtggaaaatag-aataattttacagaggagaaacgtgacagacactatctcagccaagtgatcaagatcaacattaagtca---------------taaatcttgttgatagcatgtgcccttga-atgatgtgatgaacac--ggcaatccacctctgtgg---tcttctcaatatcctgtaagaccagacttaggagaaaaaca
i proCoq1.NW_012149775v1   C 0 I 4
s otoGar3.GL873550           406975 222 +  18854210 aaagagtacagt--atgcaaagagtagaaaatag-agtaactttatagtggaaaaacctggcaaaccctatttcagccaagtgatcaagatctgcttaagatcaagatcaagatcaacttaagccaagttgacagtatgtgcacttga-atggtatgattaacg---ggcaatctacctctgtggtcttcttctcaataatgcttaagcccagtcttaggagaaaaaca
i otoGar3.GL873550         I 191 I 4
e mm10.chr17               58146963 2162 -  94987271 I
e cebCap1.NW_016107755v1     974927 1048 -   1771730 I

a score=1886728.000000
s hg38.chr6_GL000254v2_alt  1556214 177 +   4827813 tcaaattccaatagaggggcatcctacaacatacacgaccagtattcttcaatgctgtcaaggtcatcaaaac-----aagtctgagaaactcccacagccaagaggagcataaggagacatgacaactaaatgtaatgtggt-aacctccatgggatcatgaaacagaaaaagtactgagg-t
s panTro5.chr6             30425279 177 + 175400573 tcaaattccaatagaggggcatcctacaacatacacgaccagtattcttcaataatgtcaaggtcatcaaaac-----aagtctgagaaactcccacagccaagaggagcataaggagacatgacaactaaatgtaatgtggt-aacctgcatgggatcatgaaacagaaaaagtactgagg-t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30659497 177 + 173848474 tcaaattccaatagaggggcatcctacaacatacacgaccagtattcttcaataatatcaaggtcatcaaaac-----aagtctgagaaactcccacagccaagaggagcataaggagacatgacaactaaatgtaatgtggt-aacctgcatgggatcatgaaacagaaaaagtactgagg-t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     368286 177 +   2037526 tcaaattccaatagaggggcatcctacaacatacacgaccagtattcttcaatactgtcaaggtcatcaaaac-----aagtctgagaaactcccacagccaagaggagcataaggagacatgacaactaaatgtaatgtggt-aacctgcatgggatcatgaaacagaaaaagtactgagg-t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75031667 177 + 122973662 tcaaattccaacagaggggcatcctacaacatatacgaccagtattcttcaatactgtcaaggtcatcagaag-----aagtctgagaaaatcccacagccgagaggagcataaggagacatgacaactaaatgtaatgtggt-aacctgcacgggatcatgaaacagaaaaagtactgagg-t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30921368 177 + 172585720 tcaaattccaacagaggggcatcctacaacatatactatcagtattcttcagtattgccaaggtcatcaaaac-----aagtctgagaaactcccacagccaagaggagcatcaggagacatgacaactaaatgtaatgtggt-aaccagcatgggatcatgaaatagaaaaagtactgaag-t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30211576 177 - 170955103 tcaaattccaacagaggggcatcctacaacatataccatcagtattcttcagtattgccaaggtcatcaaaac-----aagtctgagaaactcccacagccaagaggagcatcaggagacatgacaactaaatgtaatgtggt-aacctgcatgggatcatgaaatagaaaaagtactgaag-t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     460152 177 +   1495729 tcaaattcccacagaggggcatcctacaacatataccatcagtattcttcagtattgccaaggtcatcaaaac-----aagtctgagaaactcccacagccaagaggagcatcaggagacatgacaactaaatgtaatgtggt-aacctgcatgggatcatgaaatagaaaaagtactgaag-t
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     563779 177 -    863181 tcaaattccaacagaggggcatcctacaacatatacgatcagtattcttcagtattgccaaggtcatcaaaac-----aagtctgagaaactcccacagccaagaggagcttcaggagacatgacaactaaatgtaatgtggt-aacctgcatgggatcatgaaatagaaaaagtactgaag-t
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29710424 177 -  71996105 tcaaattccaacagaggggcatcctacaacatatacgatcagtattcttcagtattgccaaggtcatcaaaac-----aagtctgagaaactcccacagccaagaggagcatcaggagacatgacaactaaatgtaatgtggt-aacctgcatgggatcatgaaatagaaaaagtactgagg-t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     447953 177 -    735854 tcaaattccaacagaggggcatcctacaacatatacgatcagtattcttcagtattgccaaggtcatcaaaac-----aagtctgagaaactcccacagccaagaggagcttcaggagacatgacaactaaatgtaatgtggt-aacctgcatgggatcatgaaatagaaaaagtactgagg-t
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     360172 177 -   1829203 tcaaattccaacagaggggcatcctacaacatatacgaccagtattcttcagtattgccaaggtcatcaaaac-----aagtctgagaaactcccacagccaagaggggcatcaggagacatgacaactaaatgtaatgtggt-aacctgcatgggatcatgaaatagaaaaagtactgagg-t
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30541996 177 + 171630274 tcaaattccaatagagtggcatcctacattatatacaaccaatattcttcattactgtcaaggtcatctaaac-----aggtctgagaaactgccacaaccaagaggagcataaggagacatgacaactaaatgtaatgtggt-aacctgcatggaatcacaaaacagaaaaagtactgagt-t
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           346479 177 +    515838 tcaaattacaatagaggggcatcctacattatatacgaccagtattcttcaattctgtcaaggtcatctaaac-----aggtctgagaaactgccacagccaagaggagcataaggagacgtgacaactaaatgtaatgtggt-aacctgcatggaatcatgaaatagaaaaaggactgagg-t
i saiBol1.JH378341         C 0 C 0
s aotNan1.NW_018496901v1     160182 177 -    486031 tcaaattccaatagaggggcatcctacattatatacgaccagtattcttcaatactgtcaaggtcatctaaac-----aagtctgagaaactgccacagccaacaggagcataaggagacatgacaactaaatgtaatgtggt-aacctgcatggaatcacgaaacagaaaaagtactgagg-t
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     406343 180 -   1411461 acaaattccaatagaggggtaccccacca--tatatggccagtacactccaagactgtcaagctcctcaaagcaagtaaagtccgagaaactgccacagccaaaaggagcataaagagacatgacaactaaatgtgatgtgct-aacctggacgggatcatgaaacagaaaaagtacttagg-t
i proCoq1.NW_012149775v1   I 4 C 0
s otoGar3.GL873550           407201 180 +  18854210 acaagtttcaatagaggggcatcctataatgtatatgtccagttttcttcaaaactgtcaaagtcctcaaatgaattaaattctg---aactgctacagccaagagaagcataaggagatatgacaactaaatgtaatgtggtaaacctggatatgatcaagaaaca-aaaaagtacttgggtt
i otoGar3.GL873550         I 4 C 0
e micMur3.chr6               459578 991 + 123392446 I
e mm10.chr17               58146963 2162 -  94987271 I
e cebCap1.NW_016107755v1     974927 1048 -   1771730 I

a score=1573303.000000
s hg38.chr6_GL000254v2_alt  1556391 138 +   4827813 aaaaactaaggaaatct--------------------------------------------------------------------------------------------------------------------------------------------------------------gaacac------------------actatg---gactttggtcaataataatgtattgatattgg----ttaactgcaacaaatgtaccacac----tgaggtaagatgttaataacaggggaccc-ggtttggagcatgtgggaagtttg
s panTro5.chr6             30425456 138 + 175400573 aaaaactaaggaaatct--------------------------------------------------------------------------------------------------------------------------------------------------------------gaacac------------------actatg---gactttggtcaataataatgtattgatattgg----ttaactgcaacaaatgtaccacac----tgaggtaagatgttaataacaggggaccc-ggtttggagcgtgtgggaactttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30659674 138 + 173848474 aaaaactaaggaaatct--------------------------------------------------------------------------------------------------------------------------------------------------------------gaacac------------------actatg---gactttggtcaataataatgtattgatattgg----ttaactgcaacaaatgtaccacac----tgaggtaagatgttaataacaggggaccc-ggtttggagcgtgtgggaactttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     368463 137 +   2037526 aaaaactaaggaaatct--------------------------------------------------------------------------------------------------------------------------------------------------------------gaacac------------------actatg---gactttggtcaataataatgtattgata-tgg----ttaactgcaacaaatgtaccacac----tgaggtaagatgttaataacaggggaccc-ggtttggagcgtgtgggaactttg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75031844 139 + 122973662 aaaaactaaggaaatct--------------------------------------------------------------------------------------------------------------------------------------------------------------gaacac------------------actatg--tgactttggtcaataataatgtattgatattgg----ttaattgcaacaaatgtaccaaac----tgaggtaagatgttagtaacaggggaccc-ggtttggagcatgtgggaacttcg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30921545 142 + 172585720 aaaaactaaggaaatct--------------------------------------------------------------------------------------------------------------------------------------------------------------gaatac------------------actatg---gactttggtcaataataatgtattgatattggttcattaattgcaacaaacgtaccacac----tgaggtaagatgttaataacaggggaccc-agcttggagcatgtgggaactttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30211753 142 - 170955103 aaaaactaaggaaatct--------------------------------------------------------------------------------------------------------------------------------------------------------------gaatac------------------actatg---gactttggtcaataataatgtattgatattggctcattaattgcaacaaacgtaccacac----tgaggtaagatgttaataacaggggaccc-agcttggagcatgtgggaactttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     460329 145 +   1495729 aaaaactaaggaaatct--------------------------------------------------------------------------------------------------------------------------------------------------------------gaatac------------------actatggacgactttggtcaataataatgtattgatattggctcattaattgcaacaaacgtaccacac----tgaggtaagatgttaataacaggggaccc-agcttggagcatgtgggaactttg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     563956 142 -    863181 aaaaactaaggaaatct--------------------------------------------------------------------------------------------------------------------------------------------------------------gaatac------------------actatg---gactttggtcaataataatgtattgatattggttcattaattgcaacaaatgtaccacac----tgaggtaagatgttaataacaggggaccc-agcctggagcatgtgggaactttg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29710601 142 -  71996105 aaaaactaaggaaatct--------------------------------------------------------------------------------------------------------------------------------------------------------------gaacac------------------actatg---gactttggtcaataataatgtattgatattggttcattaattgcaacaaatgtaccacac----tgaggtaagatgttaataacaggggaccc-agcctggagcatgtgggaactttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     448130 142 -    735854 aaaaactaaggaaatct--------------------------------------------------------------------------------------------------------------------------------------------------------------gaacac------------------actatg---gactttggtcaataataatgtattgatattggttcattaattgcaacaaacgtaccacac----tgaggtaagatgttaataacaggggaccc-agcctggagcatgtgggaactttg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     360349 137 -   1829203 aaaaactaaggaaatct--------------------------------------------------------------------------------------------------------------------------------------------------------------gaacac------------------attacg---gactttggtcaataataatgtattgatattggttcattaattgcaacaaatgtaccacac---------taagatgttaataactggggaccc-agcttggagcatgtgggaactttg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30542173 146 + 171630274 aaaaactaaggaaatct--------------------------------------------------------------------------------------------------------------------------------------------------------------gaacac------------------agtacg---gactttggtcaataataatgtattgatattggttcattaattgcaacaaatgtaccacacggagagaggtaagatgtaaataacaggggaccc-ggtttggagcatgtaggaactctg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           346656 142 +    515838 aaaaactaaggaactct--------------------------------------------------------------------------------------------------------------------------------------------------------------gagcac------------------actatg---gactttggtcaataataatgtattgatattggttcattaattgcaacaaatgtaccacac----agaggtaagatgtaaataacaggggaacc-ggtttggagcatgtgggaactctg
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     975975 142 -   1771730 aaaaactaaggaactct--------------------------------------------------------------------------------------------------------------------------------------------------------------gaacac------------------actatg---gactttggtcaataataatgtattgatattggttcgttaattgcaacaaatgtaccacgc----agaggtaagatgtaaataacaggggaccc-ggtttggagcatgtgggaactttg
i cebCap1.NW_016107755v1   I 1048 C 0
s aotNan1.NW_018496901v1     160359 143 -    486031 aaaaactaaggaaatct--------------------------------------------------------------------------------------------------------------------------------------------------------------gaacac------------------attatg---gactttggtcaataataatgtagtgatattggttcattaattgcaacaaatgtaccacac----agaggtaagatgtaaataacaggggacccgggtttggagcatgtaggaactttg
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     406523 142 -   1411461 aaaaactaaggaaatct--------------------------------------------------------------------------------------------------------------------------------------------------------------gaaAAC------------------actatg---gactttgttcaacaactatgcatcaatattggttcattaattgcaacgaatgtaccacac----tgatgtaagatgttcataacaggggaaac-agtttggggtatatgggaactctc
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           407381 318 +  18854210 aaaaactacagaaatcttagccaggcattgtggcgggtgcctgtagttccagctacttggaaggctgaggcaagagaatcgcttgagcccaagagttggaggtcactgtgagctgtgacaccatagcactctacagaaggcaacatagtaagactctgtctcaaaaaaataaaaaaaaaaCCTACAGAAATCTTGCAAGACCAAg---gactttggtcaataataatgtaacaatttaggttcatttattgcaacaagtgtaccacac----tgatgtaagatgttcataattggggaaat-agtttgggggacataggaactcag
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               459578 991 + 123392446 I
e mm10.chr17               58146963 2162 -  94987271 I

a score=506083.000000
s hg38.chr6_GL000254v2_alt  1556529 38 +   4827813 tactatcttctcaattcttctgtaaatctaaaagtgtt
s panTro5.chr6             30425594 38 + 175400573 tactatcttctcaatttttctgtaaatctaaaagtgtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30659812 38 + 173848474 tactatcttctcaatttttctgtaaatctaaaagtgtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     368600 38 +   2037526 tactatcttctcaatttttctgtaaatctaaaagtgtt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75031983 38 + 122973662 tactatcttctcaatttttctgtaaatctaaaagtgtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30921687 36 + 172585720 tactatcttctcaatttttctgtaaatct--aagtgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30211895 36 - 170955103 tactatcttctcaatttttctgtaaatct--aagtgtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     460474 36 +   1495729 tactatcttctcaatttttctgtaaatct--aagtgtt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     564098 36 -    863181 tactatcttctcaatttttctgtaaatct--aagtgtt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29710743 36 -  71996105 tactatcttctcaatttttctgtaaatct--aagtgtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     448272 36 -    735854 tactatcttctcaatttttctgtaaatct--aagtgtt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     360486 36 -   1829203 tactatcttctcaatttttctgtaagtct--aagtgtc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30542319 38 + 171630274 tactatcttctcaatttttctgtaaatctaaaagtgtt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           346798 38 +    515838 tactatcttcccaatttttctgtaaatctaaaagtgtt
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     976117 38 -   1771730 tactatcttcccaatttttctgtaaatctaaaagtgtt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     160502 38 -    486031 tactatcttctcaatttttctgtaaatctaaaagtgtt
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               460569 38 + 123392446 tactatcttctcaatttttctatacatctaaaactgtt
i micMur3.chr6             I 991 C 0
s proCoq1.NW_012149775v1     406665 36 -   1411461 --ctatcttctcaatttttctgcacatctaaaactgtt
i proCoq1.NW_012149775v1   C 0 I 364
s otoGar3.GL873550           407699 38 +  18854210 tactatcatctcaatttttctgtaaatctaaaattgtt
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58146963 2162 -  94987271 I

a score=247222.000000
s hg38.chr6_GL000254v2_alt  1556567 24 +   4827813 gtaagaaataaagtctacttAAAC
s panTro5.chr6             30425632 24 + 175400573 gtaagaaataaagtctaCCTAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30659850 24 + 173848474 gtgagaaataaagtctaCCTAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     368638 24 +   2037526 gtaagaaataaagtctacttAAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75032021 24 + 122973662 gtaagaaataaagtctatttAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30921723 24 + 172585720 gtaaaaaataaagtccacttAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30211931 24 - 170955103 gtaaaaaataaagtccacttAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     460510 24 +   1495729 gtaaaaaataaagtccacttAAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     564134 24 -    863181 gtaaaaaataaagtccacttaaAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29710779 24 -  71996105 gtaaaaaatgaagtccacttAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     448308 24 -    735854 gtaaaaaataaagtccacttAAAC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     360522 24 -   1829203 ataaaaaataaagtccacttAAAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30542357 24 + 171630274 gtaagaaataaagtctacttaaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           346836 23 +    515838 gtaagaaataaagtctactt-aaa
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     976155 24 -   1771730 gtaagaaataaagtctacttaaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     160540 24 -    486031 gtaagaaataaagtctacttaaaa
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               460607 24 + 123392446 cttaaaaataagatctatttaaaa
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           407737 20 +  18854210 -ctaaaaataaa---tatttaAGG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58146963 2162 -  94987271 I
e proCoq1.NW_012149775v1     406701 364 -   1411461 I

a score=40766.000000
s hg38.chr6_GL000254v2_alt  1556591 3 +   4827813 AAT
s panTro5.chr6             30425656 3 + 175400573 AAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30659874 3 + 173848474 AAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     368662 3 +   2037526 AAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75032045 3 + 122973662 AAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30921747 3 + 172585720 AAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30211955 3 - 170955103 AAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     460534 3 +   1495729 AAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     564158 3 -    863181 AAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29710803 3 -  71996105 AAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     448332 3 -    735854 AAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     360546 3 -   1829203 AAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30542381 3 + 171630274 aaT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           346859 3 +    515838 aaT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     976179 3 -   1771730 aaT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     160564 3 -    486031 aGT
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               460631 3 + 123392446 aTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     407065 3 -   1411461 aat
i proCoq1.NW_012149775v1   I 364 C 0
s otoGar3.GL873550           407757 3 +  18854210 AAT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58146963 2162 -  94987271 I

a score=2100111.000000
s hg38.chr6_GL000254v2_alt  1556594 173 +   4827813 AAAATTGCAATTTTTGAAACAT---AAA--A--AGCCTATTTTTTTTAAA-GGTG---------------ATTTT--TTTGAACTT-GGGGAAAAACATGTTAGGGATTATG-----------ATTTC-AGCTAAGAGTTAAAAACAGGAGGTTAAGGCATGCATAAACGA----ATGTCATTCTCCCCTCTTTTGAAGTACACACAAATCGTGG
s panTro5.chr6             30425659 173 + 175400573 AAAATTGCAATTTTTGAAACAT---AAA--A--AGCCTATTTTTTTTAAA-GGTG---------------ATTTT--TTTGAACTT-GGGGAAAAACATGTTAGGGATTACG-----------ATTTC-AGCTAAGAGTTAAAAACAGGAGGTTAAGGCATGCATAAACGA----ATGTCATTCTCCCCTCTTTTGAAGTACACACAAATCGTGC
i panTro5.chr6             C 0 I 1
s panPan2.chr6             30659877 173 + 173848474 AAAATTGCAATTTTTGAAACAT---AAA--A--AGCCTATTTTTTTTAAA-GGTG---------------ATTTT--TTTGAACTT-GGGGAAAAACATGTTAGGGATTACG-----------ATTTC-AGCTAAGAGTTAAAAACAGGAGGTTAAGGCATGCATAAACGA----ATGTCATTCTCCCCTCTTTTGAAGTACACACAAATCGTGC
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01015528v1     368665 173 +   2037526 AAAATTGCAATTTTTGAAACAT---AAA--A--AGCCTATTTTTTTTAAA-GGTG---------------ATTTT--TTTGAACTT-GGGGAAAAACATGTTAGGGATTATG-----------ATTTC-AGCTAAGAGTTAAAAACAGGAGGTTAAGGCATGCATAAACGA----ATGTCATTCTCCCCTCTTTTGAAGTACACACAAATCATGG
i gorGor5.CYUI01015528v1   C 0 I 1
s nomLeu3.chr1a            75032048 173 + 122973662 AAGATTGCAATTTTTGAAACAT---AAA--A--AGCCTAGCTTTTTTAAA-GGTG---------------ATTTT--TTTGAACTT-GGGGAAAAACATGTTAGGGATTATG-----------ATTTC-AGCTAACAGTTAAAAACAGAAGGTTAAGGCATGCATAAACGA----ATGTCATTCTCCCCTCTTTTGAAGTACACACAAATCGTGG
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             30921750 171 + 172585720 AAAATTGCAATTTTTGAAACAT---AAA--A--AGCCCATTTTTTT--AA-GGTA---------------ATTTT--TCTGAACTT-GGGGAAAAACATGTTAGGGATTGTG-----------ATTTC-AGCCAACAGTTAAAAACAGGAGGGTAAGGCATGCATAAATGA----ATGTCATTCTCCCCTCTTTTGAAGTACACACAAATCGTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30211958 171 - 170955103 AAAATTGCAATTTTTGAAACAT---AAA--A--AGCCTATTTTTTT--AA-GGTA---------------ATTTT--TCTGAACTT-GGGGAAAAACATGTTAGGGATTGTG-----------ATTTC-AGCCAACAGTTAAAAACAGGAGGGTAAGGCATGCATAAATGA----ATGTCATTCTCCCCTCTTTTGAAGTACACACAAATCGTGG
i macFas5.chr4             C 0 N 0
s macNem1.NW_012012100v1     460537 171 +   1495729 AAAATTGCAATTTTTGAAACAT---AAA--A--AGCCTATTTTTTT--AA-GGTA---------------ATTTT--TCTGAACTT-GGGGAAAAACATGTTAGGGATTGTG-----------ATTTC-AGCCAACAGTTAAAAACAGGAGGGTAAGGCATGCATAAATGA----ATGTCATTCTCCCCTCTTTTGAAGTACACACAAATCGTGG
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     564161 171 -    863181 AAAATTGCAATTTTTGAACCAT---AAA--A--AGCCTATTTTTTT--AA-GGTA---------------ATTTT--TTTGAACTT-GGGGAAAAACATGTTAGGGATTGTG-----------ATTTC-AGCCAACAGTTAAAAACAGGAGGGTAAGGCATGCATAAATGA----ATGTCATTCTCCCCTCTTTTGAAGTACACACAAATCGTGG
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29710806 171 -  71996105 AAAATTGCAATTTTTGAACCAT---AAA--A--AGCCTATTTTTTT--AA-GGTA---------------ATTTT--TTTGAACTT-GGGGAAAAACATGTTAGGGATTGTG-----------ATTTC-AGCCAACAGTTAAAAACAGGAGGGTAAGGCATGCATAAACGA----ATGTCATTCTCCCCTCTTTTGAAGTACACACAAATCGTGG
i chlSab2.chr17            C 0 I 1
s manLeu1.NW_012107142v1     448335 171 -    735854 AAAATTGCAATTTTTGAACCAT---AAA--A--AGCCTATTTTTTT--AA-GGTA---------------ATTTT--TTTGAACTT-GGGGAAAAACATGTTAGGGATTGTG-----------ATTTC-AGCCAAAAGTTAAAAACAGGAGGGTAAGGCATGCATAAATGA----ATGTCATTCTCCCCTCTTTTGAAGTACACACAAATCGTGG
i manLeu1.NW_012107142v1   C 0 I 1
s colAng1.NW_012115577v1     360549 175 -   1829203 AAAATTGCAATTTTTGAAACAT---AAA--A--AGCCTATTTTTTC--AA-GGTA---------------ATTTT--TTTGAACTT-GGGGAAAAAC-----AGGGATTGCGATTTCAACTAAATTTC-AGCTAACAGTTAAAAACAGGAGGGTAAGGCATGCATAAACGA----ATGTCATTCTCCTCACTTTTGAAGTACACACAAATCGT--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30542384 160 + 171630274 AAAAGTGCAATTTTTGAAACAT--AAAA--A--AGCCTATTTTTT---AA-GGTG---------------A-TTT--TTTGAACTT-GGGGAAAAACATGTTAAGTATTATG-----------ATTT--------CAGTT--ATACAGGAGGTTAAGGCATGCATAAATGA----ATGTCATTCT-CCCTCTTTTGAAGCACACATAAATCGTGG
i calJac3.chr4             C 0 I 1
s saiBol1.JH378341           346862 170 +    515838 AAAATTGCAATTTTTGAAACAT--AAAA--A--AGCCTATTTTTT---AA-GGTG---------------ATTTT--TTTGAACTTAGGGGAAAAACATGTTAAGCATTATG-----------ATTTC-AGCTAACAGTT--AAACAGGAGGTTAAGGCATGCATAAATGA----ACGTCATTCTCCCCTCTTTTGAAGCACACACAAATCGTAG
i saiBol1.JH378341         C 0 I 1
s cebCap1.NW_016107755v1     976182 169 -   1771730 AAAATTGCAATTTTTGAAACATTAAAAA--A--AGCCTATTTTTT---AA-GGTG---------------A--TT--TTTGAACTT-GGGGAAAAACATGTTAAGCATTATG-----------ACTTC-AGCTAACAGTT--AAACAGGAGGTTAAGGCATGCATAAACGA----ATGTCATTCTCCCCTCTTTTGAAGCACACACAAATTGTGG
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496901v1     160567 168 -    486031 AAAATTGCAATTTTTGAAACAT--AAAA--A--AGCCTGTTTTTTC--AA-GGTG---------------A-TTT--TTTGAACTC-GGGGAAAAACATGTTAAGCATTATG-----------ATTTC-AGCTAACAGTT--AAACAGGAGGTTAAGGCATGCATAAACGA----ATGTCATTCT-CCCTCTTTTGAAGCACACATAAATCGTGG
i aotNan1.NW_018496901v1   C 0 I 1
s micMur3.chr6               460634 171 + 123392446 AAAGTTGAAATTTTAGGAACAA---AAA--A----TCTG-TTTTTTA-AA-GGTG---------------ATTTTTCTTTTAATTTGGGGAAAAAACATGCTAGGGATTATG-----------ATTTT-AGATAACAGTT-AAAATAGGAGGTTCAGACACGTATGAATGA----ATGTCATTCTCCCCTGTGTTGATGCACACACAAATCGTGG
i micMur3.chr6             C 0 I 1
s proCoq1.NW_012149775v1     407068 175 -   1411461 aaaGTTGCAATTTTGGGAACAT---AAA--AAGAGCCTGTTTTTTTA-AA-GGTG---------------ATTTGT-TTTTAATTTGGGGAAAAGACATGCTAGGGATTATG-----------ATTTT-AGATAACAGTT-AAAATAGGAGGCTCAGGCATGCATGAATGA----ATGTCATTCTCCCCTCTTTTGAGGCACACACAAATCGTGG
i proCoq1.NW_012149775v1   C 0 I 1
s otoGar3.GL873550           407760 171 +  18854210 AAAGACCCAGATTTGGGAACAT---AAA--G----TCTATTTTTTTA-AACAGTG---------------ATTTTTTTTTTAACTT-GGAAAAAAATATGCTAGGG-TTATG-----------ATTTTCAGCTAACAGTT-AAAACAGGAGGTTCAGGCATGCATGAA-AA----ATGTCATTCTCCCCACTTTTGGTGCACACACAAATCATGG
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58149125 187 -  94987271 AAAGTTGCAGTTTTAAAGGCAT---TAATGA--AAGCTTTCTTTTAGAAA-AATATGGgtttgtttgtttgtttg--tttTAACTT--GGGAGGAATACTCTAGGCATCATG-----------AATCC-ATCTCAC------TAACAAGGGGTTCAGGCATGCATGAACGAGCGCATGTCATTCTTCCCTTCTTTGAAACACACACAAATGGTTG
i mm10.chr17               I 2162 I 4

a score=818905.000000
s hg38.chr6_GL000254v2_alt  1556767 81 +   4827813 GTCAAAATTTGAAAT-CTACTGGAGATTTGGAAGTGTGTCCCTCCCATTTACTCCACAGAGTTAAATT--TACAC-TTTTTT---------------------TCT
s panTro5.chr6             30425833 81 + 175400573 GTCAAAATTTGAAAT-CTACTGGAGATTTGGAAGTGTGTCCCTCCCATTTACTCCACAGAGTTAAATT--TACAC-TTTTTT---------------------TCT
i panTro5.chr6             I 1 C 0
s panPan2.chr6             30660051 81 + 173848474 GTCAAAATTTGAAAT-CTACTGGAGATTTGGAAGTGTGTCCCTCCCATTTACTCCACAGAGTTAAATT--TACAC-TTTTTT---------------------TCT
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01015528v1     368839 81 +   2037526 GTCAAAATTTGAAAT-CTACTGGAGATTTGGAAGTGTGTCCCTCCCATTTACTCCACAGAGTTAAATT--TACAC-TTTTTT---------------------TCT
i gorGor5.CYUI01015528v1   I 1 C 0
s nomLeu3.chr1a            75032222 81 + 122973662 GTCAAAATTTGAAAT-CTACTGGAGATTTGGAAGTGTGTCTCTCCCATTTACTCCACAAAGTTAAATT--TACAC-CTTTTT---------------------TCT
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             30921921 25 + 172585720 ---------------------------------------------------------------------------------TGNNNNNNNNNNNNNNNNNNNNTCT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     460709 81 +   1495729 GTCAAAATTTGAAAT-CTACTAGAGATTTGGAAGTGTGTCCCTACCATGTACTCCACAAAGTTAAATT--TACAC-TTTTTT---------------------TCT
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     564333 81 -    863181 GTCAAAATTTGAAAT-CTACTAGAGATTTGGAAGTGTGTCCCTACCATGTACTCCACAAAGTTAAATT--TACAC-TTTTTT---------------------TCT
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29710978 81 -  71996105 GTCAAAATTTGAAAT-CTACTAGAGATTTGGAAGTGTGTCCCTACCATTTACTCCACAAAGTTAAATT--TACAC-TTTTTT---------------------TCT
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012107142v1     448507 81 -    735854 GTCAAAATTTGAAAT-CTACTAGAGATTTGAAAGTGTGTCCCTACCATGTACTCCACAAAGTTAAATT--TACAC-TTTTTT---------------------TCT
i manLeu1.NW_012107142v1   I 1 C 0
s colAng1.NW_012115577v1     360724 82 -   1829203 GTCAAAATTTGAAAT-CTATTAGAGATTTGGAAGTGTGTCCCTACCATTTACTCCACAAAGTTAAATT--TACACTTTTTTT---------------------TCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30542545 81 + 171630274 GTCAAAATTTGAAATCCTACTGGAGATTTGGAAGTGTTTCCCTCCCATTTACTCCACAAAGTT-AATT--TACAC-TTTTTT---------------------TCT
i calJac3.chr4             I 1 C 0
s saiBol1.JH378341           347033 81 +    515838 GTCAAAATTTGAAATCCTACCGGAGATTTGGAAGTGTTTCCCTCCCATTTACTCCACAAAGTT-AATT--TACAC-TTTTTT---------------------TCT
i saiBol1.JH378341         I 1 C 0
s cebCap1.NW_016107755v1     976352 77 -   1771730 GTCAAAATTTGAAATCCTACTGGAGATTT----GTGTTTCCCTCCCATTTACTTCACAAAGTT-AATT--TACAC-ATTTTT---------------------TCT
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496901v1     160736 81 -    486031 GTCAAAATTTGAAATCCTACTGGAGATTTGGAAGTGTTTCCCTCCCATTTACTCCACAAAGTT-AATT--TACAC-TTTTTT---------------------TCT
i aotNan1.NW_018496901v1   I 1 C 0
s micMur3.chr6               460806 81 + 123392446 GTCAAAATCTGGAAT-CTACTGGGAATTTGGAAGCGTTTCCCTCCCGTTTACTCTGAAAAGTTAAATG--TGCAC-TTTTTT---------------------CCT
i micMur3.chr6             I 1 C 0
s proCoq1.NW_012149775v1     407244 81 -   1411461 GTCAAAATTTGGAAT-CTACTAGGAATTTGGAAGCGTTTCCCTCCCATTTACTCCGCAAAGTTAAATG--TGCAC-TTTTTT---------------------CCT
i proCoq1.NW_012149775v1   I 1 C 0
s otoGar3.GL873550           407932 81 +  18854210 GTCAAAATCTGGAAT-CTACTGGGAATTTGCAAGTGTTTCCCTTCCATTTATTCTGCAAAGTTAGATT--TACAC-TCTTTT---------------------CCT
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58149316 82 -  94987271 GTCAAAATCTGGAAT-GTACGGGGAATTGTTAAGTGTCTC-CTCCTATTCACTTCCCAAAGTTAAATTCATACAT-TTCTTT---------------------TCT
i mm10.chr17               I 4 I 178

a score=439498.000000
s hg38.chr6_GL000254v2_alt  1556848 34 +   4827813 AAGGCCAAATAGG-GAG-AAAATCAGTAAGAAAAAT
s panTro5.chr6             30425914 34 + 175400573 AAGGCCAAATAGG-GAG-AAAATCAGTAAGAAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30660132 34 + 173848474 AAGGCCAAATAGG-GAG-AAAATCAGTAAGAAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     368920 34 +   2037526 AAGGCCAAATAGG-GAG-AAAATCAGTAAGAAAAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75032303 34 + 122973662 AAGGCCAAATAGG-GAG-AAAATCAGTAAGAAAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30921946 34 + 172585720 AAGGCCAAATAGG-GAG-AAAATCAGTAAGAAAAAT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     460790 34 +   1495729 AAGGCCAAATAGG-GAG-AAAATCAGTAAGAAAAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     564414 34 -    863181 AAGGCCAAATAGG-GAG-AAAATCAGTAAGAAAAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29711059 34 -  71996105 AAGGCCAAATAGG-GAG-AAAATCAGTAAGAAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     448588 34 -    735854 AAGGCCAAATAGG-GAG-AAAATCAGTAAGAAAAAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     360806 35 -   1829203 AAGGCCAAATAGG-GAGAAAAATCAGTAAGAAAAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30542626 34 + 171630274 AAGGCCAAATAGG-GAG-AAAATCAGCAAGAAAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           347114 34 +    515838 AAGGCCAAATAGG-GAG-AAAATCAGTAAGAAAAAT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     976429 34 -   1771730 AAGGCCAAATAGG-GAG-AAAATCAGTAAGAAAAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     160817 34 -    486031 AAGGCCAAATAGG-GAG-AAAATCAGCAAGAAAAAT
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               460887 34 + 123392446 AAGGCCAAAGAGG-GAG-AAAATCGGCAGGAAAAAT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     407325 34 -   1411461 AAGGCCAAACAGG-GAT-AAAATCGGCAGGAAAAAT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           408013 35 +  18854210 AAGGTCAAATAGGAAAA-AAAATCGGCAGGAAAAAT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58149398 178 -  94987271 I

a score=2101113.000000
s hg38.chr6_GL000254v2_alt  1556882 190 +   4827813 GCTAATGAGCTGGAA------------GGAGTGAAAGCACAGCTCCAAGTATTTGTGGCTAAACCGGTTTACTCCGaac--------a-aaaaa-------aa------aaa----------------aagaaagaaagagaaaga-----aaGCATGAC------AC-----TTTGGTCAGGGAGCTGGATTAGTCGCCTATCTACCAGGCTCCAAGCAACC----GGACGGTCATCCAGGCCCCGCTTACTTCTGGTT
s panTro5.chr6             30425948 190 + 175400573 GCTAATGAGCTGGAA------------GGAGTGAAAGCACAGCTCCAAGTATTTGTGGCTAAACCGGTTTACTCCGaac--------a-aaaaa-------aa------aaa----------------aagaaagaaagagaaaga-----aaGCATGAC------AC-----TTTGGTCAGGGAGCTGGATTAGTCGCCTATCTACCAGGCTCCAAGCAACC----GGACGGTCATCCAGGCCCCGCTTACTTCTGGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30660166 190 + 173848474 GCTAATGAGCTGGAA------------GGAGTGAAAGCACAGCTCCAAGTATTTGTGGCTAAACCGGTTTACTCCGaac--------a-aaaaa-------aa------aaa----------------aagaaagaaagagaaaga-----aaGCATGAC------AC-----TTTGGTCAGGGAGCTGGATTAGTCGCCTATCTACCAGGCTCCAAGCAACC----GGACGGTCATCCAGGCCCCGCTTACTTCTGGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     368954 197 +   2037526 GCTAATGAGCTGGAA------------GGAGTGAAAGCACAGCTCCAAGTATTTGTGGCTAAACCGGTTTACTCCGaac--------a-aaaaaaaaaaagaa------aaa----------------aagaaagaaagagaaaga-----aaGCATGAC------AC-----TTTGGTCAGGGAGCTGGATTAGTCGCCTATCTACCAGGCTCCAAGCAACC----GGACGGTCATCCAGGCCCCGCTTACTTCTGGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75032337 186 + 122973662 GCTAATGGGCTGGAA------------AGAGTGAAAGCACAGCTCCAAGTATTTGCGGCTAAACCGGTTTACTCCGAAC--------A-ACAAC-------AA------CA--------------------AAAAAGACAGAAAGA-----AAGCATGAC------AC-----TTTGGTCAGGGAGCTGGATTAGTCGCCTATCTACCAGGCTCCAAGCAACC----GGACGGTCATCCAGGCCCCGCTTACTTCTGGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30921980 190 + 172585720 GCTAATGGGCTGGAA------------GGAGTGAAAGCACAGCTCCAAGTATTTGTGGCTAAACCGGTTTACTCCGAAC--------Caaaaaa-------aa------aa-----------------gaaaaagaaaaagaaaGC-----AAGCATGAC------AC-----TTTGGTCAGGGAGCTGGATTAGTCGCCCATCTACCAGGCTCCAAGCAACC----GGACGGTCATCCAGGCCCTGCTTACTTCTGGTT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     460824 189 +   1495729 GCTAATGGGCTGGAA------------GGAGTGAAAGCACAGCTCCAAGTATTTGTGGCTAAACCGGTTTACTCCGAAC--------C-aaaaa-------aa------aa-----------------gaaaaagaaaaagaaaGC-----AAGCATGAC------AC-----TTTGGTCAGGGAGCTGGATTAGTCGCCCATCTACCAGGCTCCAAGCAACC----GGACGGTCATCCAGGCCCTGCTTACTTCTGGTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     564448 189 -    863181 GCTAATGGGCTGGAA------------GGAGTGAAAGCACAGCTCCAAGTATTTGTGGCTAAACCGGTTTACTCCGAAC--------C-aaaaa-------aa------aa-----------------gaaaaagaaaaagaaGGC-----AAGCATGAC------AC-----TTTGGTCAGGGAGCTGGATTAGTCGCCCATCTACCAGGCTCCAAGCAACC----GGACGGTCATCCAGGCCCTGCTTACTTCTGGTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29711093 186 -  71996105 GCTAATGGGCTGGAA------------GGAGTGAAAGCACAGCTCCAAGTATTTGTGGCTAAACCGGTTTACTCAGAAC--------C-AAAAA-------GA--------------------------AAAAAGAAAAAGAAATA-----AAGCATGAC------AC-----TTTGGTCAGGGAGCTGGATTAGTCGCCTATCTACCAGGCTCCAAGCAATC----GGACGGTCATCCAGGCCCTGCTTACTTCTGGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     448622 195 -    735854 GCTAATGGGCTGGAA------------GGAGTGAAAGCACAGCTCCAAGTATTTGTGGCTAAACCGGTGTACTCAGAAC--------C-aaaaa-------aagaaaaaaa-----------------gaaaaagaaaaagaaata-----aaGCATGAC------AC-----TTTGGTCAGGGAGCTGGATTAGTCGCCTGTCTGCCAGGCTCCAAGCAACC----GGACGGTCATCCAGGCCCTGCTTACTTCTGGTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     360841 187 -   1829203 GCTAATGGGCTGGAA------------GGAGTGAAAGCACAGCTCCAAGTATTTGTGGCTAAACCGGTTTACTCCGaac--------a-aaaaa-------aa------a-------------------aaaaagaaaaagaaaga-----aaGCATGAC------AC-----TTTGGTCAGGGAGCTGGATTAGTCGCCTATCTACCAGGCTCCAAGCAACC----GGACGGTCATCCAGGCCCTGCTTACTTCTGGTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30542660 205 + 171630274 GTTGATGAGCTGGAG------------GGAGTGAAAGCACAGCTCCAAGTATTTGTGGCTAAACCGGTTTACTCCGACC--------a-aaaaa-------aa------aaaaaagaaagaaagaaaggaaa-agaaaaagaaagc-----aagCATGAC------AC-----TTTGGTCAGGGAACTGGATTAGCCGCCTATCTACCAGGCTCCAAGCAAAC----GGACGGTCAACCAGGCCCCGCTTACTTCTGGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           347148 206 +    515838 GTTAATGGGCTGGAG------------GGAGTGAAAGCACAGCTCCTAGTATTTGTGGCTAAACCAGTTTACTTCGACC--------a-aaaaa-------aa------aaaaaaaaagaaaagaaaagaaacagaaaaaGAGAGC-----AAGCATGAC------AC-----TTTGGTCAGGGAGCTGGATTAGCCGCCTATCTACCAGGCTCCAAGCAAAC----GGACGGTCAACCAGGCCCCGCTTACTTCTGGTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     976463 206 -   1771730 GTTAATGGGCTGGAG------------TGAGTGAAAGCACAGCTCCAAGTATTTGTGGCTAAACCCGCTCACTCCGACC--------a-aaaaa-------aa------aaaaaagaaagaaagaaagaaagaaaaagaaaaaagc-----aagCATGAC------AC-----TTTGGTCAGGGAGCTGGATTAGCCTCCTATCTACCAGGCTCCAAGCAAAC----GGACGGTCTACCAGGCCCCGCTTACTTCTGGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     160851 196 -    486031 ATTAATGGGCTGGAG------------GGAGTGAAAGCACAGCTCCAAGTATTTGTGGCTAAACCGGTTTTCC-------------------AA-------aa------aaaaaaaaaaaaagaaaaagaaaaagaaaaagaaaGC-----AAGCATGAC------AC-----TTTGGTCAGGGAGCTGGATTCGTCGCCTATCTACCAGGCTCCAAGCAAAC----GGACGGTCAACCAGGCCCCGCTTACTTCTGGTT
i aotNan1.NW_018496901v1   C 0 C 0
s micMur3.chr6               460921 194 + 123392446 GCTGATCCGGTGGAGGA---------GGGAGTGAATGCACAGCTACAGGTATATGTGGCTAAACCGGTTTGCTCCAACC--------A-AAAAA-------AA------AA---------------------AAGTTAAGGAAAGA-----AAACATGACTTCACGAC-----TCTAGTCACAGGGCTGGACTGGCACTCCATCTACCAGGCTCCAAGCAACC----GGGCCGTCATCCAGGCCCCGCTTATTTCGGGTT
i micMur3.chr6             C 0 N 0
s proCoq1.NW_012149775v1     407359 190 -   1411461 GCTAATGCGGTGGAAGA---------GGGAGTGAATGCACAGCTCCAAGTATATGCGGCTAAACCGGTTTACTCCGACC-------------AA-------AA------AA---------------------GAGTTAAGGAAAGA-----AAACATGACTTCATGGC-----TCTGGTCACAGAGCCGGACTGGCACTCCATCTACCAAGCTCCAAGCAACC----GGACCGTCATCCGGGCCCCGCTTACTTCTGGTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           408048 201 +  18854210 GCTAATG-GCTGGAGGA---------GGGAGCGAATGCACAGCTCCAAGTATACGTGGCTAAACCGGTTTACTCCGACGAATTAAAAA-AATAA-------AA------AA---------------------GAGGAAAAGAAAGA-----AATCATGACTTCACGAC-----TTTGGTCATGGCGCTGGACTGGCAGTCTATCTACCAGGCTCCAAGCAACC----GGACCGTCATCCAGGCCCCGCTTACTTCTGGTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58149576 192 -  94987271 GCTAATTAGGTAGTAAAATCATCAGTGATAACGAACGCACAGCTCTTGGTACAACTAGCTAAACCAGTTTACTCTGAGG--------a-taaat-------aa------at-----------------aaaaaaaaaataaacagatacataaataTAAG------ACCTGCTTCTGGTCATGCAG-----------------------GGCTCCAAGCCACCAGGTGGAACGTCATCCGGGTCCCGCTCACTTCTGGCT
i mm10.chr17               I 178 C 0

a score=1750761.000000
s hg38.chr6_GL000254v2_alt  1557072 165 +   4827813 CCGCA-GACTAGAATGGATGG----GAGTCTGAGTAGGATACCAGAAAGCGAGAAAGACCCAAGAGGAGGGGGAGAATGTAAGGACAAGCAAACAGGAGGGATCTGGCTGGCAGGGAGGACGCAGCGAACTTGACCCCCTCCTGAGCCCG----CCCGGGGGCCT-GGCCCCGTT
s panTro5.chr6             30426138 165 + 175400573 CCGCA-GACTAGAATGGATGG----GAGTCTGAGTAGGATACCAGAAAGCGAGAAAGACCCAAGAGGAGGGGGAGAATGGAAGGACAAGCAAACAGGAGGGATCTGGCTGGCAGGGAGGACGCAGCGAACTTGACCCCCTCCTGAGCCCG----CCCGGGGGCCT-GGCCCCGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30660356 165 + 173848474 CCGCA-GACTAGAATGGATGG----GAGTCTGAGTAGGATACCAGAAAGCGAGAAAGACCCAAGAGGAGGGGGAGAATGGAAGGACAAGCAAACAGGAGGGATCTGGCTGGCAGGGAGGACGCAGCGAACTTGACCCCCTCCTGAGCCCG----CCCGGGGGCCT-GGCCCCGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     369151 164 +   2037526 CCGCA-GACTAGAATGGATGG----GAGTCTGAGTAGGATACCAGAAAGCGAGAAAGACCCAAGAGGAGGGGGAGAATGGAAGGACAAACAAACAGGA-GGATCTGGCTGGCAGGGAGGACGCAGCGAACTTGACCCCCTCCTGAGCCCG----TCCGGGGGCCT-GGCCCCGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75032523 166 + 122973662 CCGCA-GACTAGAATGGATGG----GAGTCTGAGTAGGATACCAGAAAGCGAGAAAGACCCAAGAGGAGGGAGAGAATGGAAGGACAAGCAAACAGGAGGGATCTGGCTGGCAGAGAGGACGCAGCGAACTTGACCCCCTCCTGAGCCCG----CCCGGGGGCCTGGGCTCCGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30922170 165 + 172585720 CCGCA-GACTAGAATGGATGG----GAGTCTGAGCAGGATACCAGAAAGCGAGAAAGACCCAAAAGGAGTGGGAGAATGGAAGGACAAGCAAACAGGAGGGATCCGGCTGGCAGAGAGGACGCAGCGAACTTGACCCCCTCCTGAGCCCG----GCCGGGGGCCT-GGCCCCGTT
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     461013 165 +   1495729 CCGCA-GACTAGAATGGATGG----GAGTCTGAGCAGGATACCAGAAAGCGAGAAAGACCCAAAAGGAGTGGGAGAATGGAAGGACAAGCAAACAGGAGGGATCCGGCTGGCAGAGAGGACGCAGCGAACTTGACCCCCTCCTGAGCCCG----GCCGGGGGCCT-GGCCCCGTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     564637 165 -    863181 CCGCA-GACTAGAATGGATGG----GAGTCTGAGCAGGATACCAGAAAGCGAGAAAGATCCAAGAGGAGTGGGAGAATGGAAGGACAAGCAAACAGGAGGGATCCGGCTGGCAGAGAGGACGCAGCGAACTTGACCCCCTCCTGAGCCTG----CCCGGGGGCCT-GGCCCCGTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29711279 165 -  71996105 CCGCA-GACTAGAACTGATGG----GAGTCTGAGCAGGATACCAGAAAGCGAGAAAGACCCAAGAGGAGTGGGAGAATGGAAGGACAAGCAAACAGGAGGAATCCGGCTGGCAGAGAGGACGCAGCGAACTTGACCCCCTCCTGAGCCCG----CCCGGGGGCCT-GGCCCCGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     448817 165 -    735854 CCGCA-GACTAGAATGGATGG----GAGTCTGAGCAGGATACCAGAAAGCGAGAAAGACCCAAGAGGAGTGGGAGAATGGAAGGACAAGCAAACAGGAGGGATCCGGCTGGCAGAGAGGACGCAGCGAACTTGACCCCCTCCTGAGCCCG----CCCGGGGGCCT-GGCCCCGTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     361028 165 -   1829203 CCGCA-GACTAGAATGGATGG----GAGTCTGAGCAGGATACCAGAAAGCGAGAAAGACCCAAGAGGAGTGGGAGAATGGAAGGATAAGCAAACAGGAGGGATTCGGCTGGCAGAGAGGACACAGCGAACTTGACTCCCTCCTGAGCCCG----CCCGGGGGCCT-GGCCCGGTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30542865 165 + 171630274 CCGCA-GACTATAATGGATCG----GAGTCTGAGGAGGACACCAGAAAGCAAGGAGGACCCAAGAGGAAGAGGAGAATGGAAGGACAAGCAAGCAGGAGGGATGAGGCTGGCGGGGAGGACGCAGCGAACTTGACCCCCTCCTGAGCCCG----CCCGGGGGCCT-GGCCCCGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           347354 162 +    515838 CCGCA-GACTGTAATGGATCG----GAGTCTGAGGAGGACACCAGAAAGC---GAGGACCCAAGAGGAAGAGGAGAATGGAAGGACAAGCAAGCAGGAGGGACGAGGCTGGCGGGGAGGACGCAGCGAACTTGACCCCCTCCTGAgcccg----cccgggggccc-ggccccgTT
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     976669 165 -   1771730 CCGCA-GACTATAATGGATCG----GAATCTGAGAAGGACACCAGAAAGCgaggaggacccaagaggaagaggagaatggaaggacaagcaagcaggagggacgaggctggcggggaggaCGCAGCGAACTTGACCCCCTCCTGAGCCCG----CCCGGGGGCCT-GGCCCCGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     161047 165 -    486031 CCGCA-GACTATAATGGATCG----GAGTCTGAGGAGGACACGAGAAAGCGAGGAAGACCCGAGAGGAAGAGGAGAATGGAAGGACAAGCAAGCAGGAGGGATGAGGCTGGCGGGGAGGACGCAGCAAACTTGACCCCCTCCTGAGCCCG----CCCGGGGGCCT-GGCCCCGTT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     407549 163 -   1411461 CTGCAGGACTAGTACGGACCC----AAGTCTGAGCAGGACACCGGAAAGCGAGAA-GACCCACGAGGAAGGGGACAATGTAGGGTCAAGCAAGCAGGAGGGATCAGGCTCCCAGGGAGGACGCGGGGAACTTGG--CCTCCCCGGGCCCG----CCGGGGGCCCT-GGCCCCGTT
i proCoq1.NW_012149775v1   C 0 I 63
s otoGar3.GL873550           408249 162 +  18854210 CTGGA-AACCAGAATGTATCC----GAATCTGAGCTAGACAACGGAAAGCGAGGA-AACCCAAGAGGAAGGGGAGAATGGTGGGTCAAGCAAGCAGGA--GACAGGGCTCCCAGGGAAGAAGCGGCGAACTTGGCCCCTCTCCGAGCCCA----CTGGGGTGCCT-GGCCCTGTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58149768 141 -  94987271 CTGGG-GACTGGAAGAGACTGAAGTAAGTCTGGGTTGGACC--------TGAGGAGGA---AGGAACACGGCGAGCTCAGGGCGAAAGGCCCAAAGGCGAGCC------------GGGGACGCGGCG---------CTCACGCGAGCTCGCCGTCCCGCGCGCCC-GGGCCTGGT
i mm10.chr17               C 0 C 0

a score=123106.000000
s hg38.chr6_GL000254v2_alt  1557237 14 +   4827813 ----T-TGAACCCGGGCCC
s panTro5.chr6             30426303 14 + 175400573 ----T-TGAACCCGGGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30660521 14 + 173848474 ----T-TGAACCCGGGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     369315 14 +   2037526 ----T-TGAACCCGGGCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75032689 15 + 122973662 ----TCTGAACCCGGGCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             30922335 14 + 172585720 ----T-TGAACTCGGGCCC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     461178 14 +   1495729 ----T-TGAACCCGGGCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     564802 14 -    863181 ----T-TGAACCCGGGCCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29711444 14 -  71996105 ----T-TGAACCCCGGCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     448982 14 -    735854 ----T-TGAACCCCGGCCC
i manLeu1.NW_012107142v1   C 0 N 0
s colAng1.NW_012115577v1     361193 14 -   1829203 ----T-TGAACAGGGGCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30543030 14 + 171630274 ----C-TGAACCCGGGCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           347516 14 +    515838 ----C-TGAACCCGGGCCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     976834 14 -   1771730 ----C-TGAACCCGGGCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     161212 14 -    486031 ----C-TGAACCCGGGCCC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           408411 14 +  18854210 ----C-CGCCCCCGGGCCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58149909 17 -  94987271 TAGCC-CTGCCCAGGGCC-
i mm10.chr17               C 0 C 0
e proCoq1.NW_012149775v1     407712 63 -   1411461 I

a score=427720.000000
s hg38.chr6_GL000254v2_alt  1557251 53 +   4827813 GGCGGCTGCGTT-GGGTCGCCCCAAACCCGGTG--AGCGTACGAGACTGTTGCTTC
s panTro5.chr6             30426317 53 + 175400573 GGCGGCTGCGTT-GGGTCGCCCCAAACCCGCTG--AGCGTACGAGACTGTTGCTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30660535 53 + 173848474 GGCGGCTGCGTT-GGGTCGCCCCAAACCCGCTG--AGCGTACGAGACTGTTGCTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     369329 53 +   2037526 GGCGGCTGCGTT-GGGTCGCCCCAAACCCGGGG--AGCGTACGAGACTGTTGCTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75032704 53 + 122973662 GGCGGCTGCGTT-GGGTCGCTCCAATCTCGGCG--AGCGTGCGAGACTGTTGCTTC
i nomLeu3.chr1a            C 0 N 0
s rheMac8.chr4             30922349 54 + 172585720 GGCGGCCGCGCTGGGGTCGCCCCAAACCCGGGG--CGCGTGCGAGACTGTTGCTTC
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     461192 54 +   1495729 GGCGGCCGCGCTGGGGTCGCCCCAAACCCGGGG--CGCGTGCGAGACTGTTGCTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     564816 54 -    863181 GGCGGCCGCGCTGGGGTCGCCCCAAACCCGGGG--CGCGTGCGAGACTGTTGCTTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29711458 53 -  71996105 GGCGGCCGCGCT-GGGTCGCCCCAAACCCGGGG--CGCGTGCGAGACTGTTGCTTC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     361207 53 -   1829203 GGAGGCCGCGCT-GGGTCGCCCCAAACCCGGGG--CGCGTGCGAGACTGTTGTTTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30543044 53 + 171630274 GGCGGCCGCGTT-GGGTCGCCCCAAACCCGGGG--CGCGTGCGACACTGTTGCTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           347530 53 +    515838 GGCGGCCGCGTT-GGGTCGCCCCAAACCCGGGG--CGCGTGCGACACTGTTGCTTC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     976848 53 -   1771730 GGCGGCCGCGTT-GGGTCGCCCCAAACCCGGGG--CGCGTGCGACACTGTTGCTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     161226 53 -    486031 GGCGGCCGCGTT-GGGTCGCCCCAAACCTGGGG--CTCGTGCGACACTGTTGCTTC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           408425 53 +  18854210 CACGGCCGCCTT-TGGTTGCCCCAAAGCTGGGGCCCGTGTGTGAGACTGGTGCT--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58149926 50 -  94987271 CGCGGCCGCCTT-CGCTGTCCCCA--CCCGGGT--CGCACG-GCGGCCGCTCCTCC
i mm10.chr17               C 0 C 0
e proCoq1.NW_012149775v1     407712 63 -   1411461 I

a score=88569.000000
s hg38.chr6_GL000254v2_alt  1557304 20 +   4827813 GCTGTATGTCTCATGTG-CAC--
s panTro5.chr6             30426370 20 + 175400573 GCTGTATGTCTCATCTG-CAC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30660588 20 + 173848474 GCTGTATGTCTCATCTG-CAC--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     369382 20 +   2037526 GCTGTATGTCTCATCTG-CAC--
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30922403 21 + 172585720 GCTGTATCTCTCATTTGACAC--
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     461246 21 +   1495729 GCTGTATCTCTCATTTGACAC--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     564870 21 -    863181 GCTGTATCTCTCATTTGACAC--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29711511 21 -  71996105 GCTGTATCTCTCATTTGACAC--
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     361260 21 -   1829203 GCTGTATCTCTCATTTGACAC--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30543097 20 + 171630274 GCT-TATCTCTCATCCGACAC--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           347583 20 +    515838 GCT-TATCTCTCATCCGACAC--
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     976901 20 -   1771730 GCT-TATCTCTCATCCGACAT--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     161279 17 -    486031 GCT-TATCTC---TCCGACAC--
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           408478 21 +  18854210 GCTGCATCTCTCATTGAACAC--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58149976 20 -  94987271 ---GCGTCTCCTCACCAGTGCAA
i mm10.chr17               C 0 C 0
e proCoq1.NW_012149775v1     407712 63 -   1411461 I

a score=311409.000000
s hg38.chr6_GL000254v2_alt  1557324 31 +   4827813 CCCCTACTCACCGGTCCCGAGCTCCGGGCCG
s panTro5.chr6             30426390 31 + 175400573 CCCCTACTCACCGGTCCCGAGCTCCGGGCCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30660608 31 + 173848474 CCCCTACTCACCGGTCCCGAGCTCCGGGCCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     369402 31 +   2037526 CCCCTACTCACCGGTCCCGAGCTCCGGGCCG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30922424 31 + 172585720 CCCCTACTCACCggtcccgagctccgggccc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     461267 31 +   1495729 CCCCTACTCACCggtcccgagctccgggccc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     564891 31 -    863181 CCCCTACTCACCggtcccgagctccgggccc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29711532 31 -  71996105 CCCCTACTCACCGGTCCCGAGCTCCGGGCCG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     361281 31 -   1829203 CCCCTACTCACCGGTCCCGAGCTCCGGGCCG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30543117 30 + 171630274 CCCCTACTCACCGGTCCCGAGCTCC-GGCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           347603 31 +    515838 CCCCTACTCACCGGTCCCGAGCTCCGGGCGG
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     976921 31 -   1771730 CCCCTACTCACCGGTCCCGAGCTCCGGGCGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     161296 31 -    486031 CCCCTACTCACCGGTCCCGAGCTCCGGGCGG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     407775 31 -   1411461 CCCCTACTCACCGGTCTCGAGCTCCGGGCCG
i proCoq1.NW_012149775v1   I 63 C 0
s otoGar3.GL873550           408499 31 +  18854210 CCCCTACTCACCGGTCCCGAGCTCCGGGCCG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58149996 31 -  94987271 ACCGCACTCACCCGCGCCGCTCTCCGGGCCG
i mm10.chr17               C 0 N 0

a score=62201.000000
s hg38.chr6_GL000254v2_alt  1557355 7 +   4827813 CGAATCC
s panTro5.chr6             30426421 7 + 175400573 CGAATCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30660639 7 + 173848474 CGAATCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     369433 7 +   2037526 CGAATCC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30922455 7 + 172585720 cgaatcc
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     461298 7 +   1495729 cgaatcc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     564922 7 -    863181 cgaatcc
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29711563 7 -  71996105 CGAATCC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     361312 7 -   1829203 CGAATCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30543147 7 + 171630274 CGAACGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           347634 7 +    515838 CGAACCC
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     976952 7 -   1771730 CGAACCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     161327 7 -    486031 CGAACCC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     407806 7 -   1411461 CGAATCC
i proCoq1.NW_012149775v1   C 0 N 0
s otoGar3.GL873550           408530 7 +  18854210 CGAATCC
i otoGar3.GL873550         C 0 C 0

a score=1820.000000
s hg38.chr6_GL000254v2_alt  1557362 1 +   4827813 -C
s panTro5.chr6             30426428 1 + 175400573 -C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30660646 1 + 173848474 -C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     369440 1 +   2037526 -C
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30922462 1 + 172585720 -c
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     461305 1 +   1495729 -c
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     564929 1 -    863181 -c
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29711570 1 -  71996105 -C
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     361319 1 -   1829203 -C
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30543154 1 + 171630274 -C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           347641 1 +    515838 -C
i saiBol1.JH378341         C 0 C 0
s cebCap1.NW_016107755v1     976959 1 -   1771730 -C
i cebCap1.NW_016107755v1   C 0 N 0
s aotNan1.NW_018496901v1     161334 1 -    486031 -C
i aotNan1.NW_018496901v1   C 0 N 0
s otoGar3.GL873550           408537 1 +  18854210 G-
i otoGar3.GL873550         C 0 C 0

a score=8911.000000
s hg38.chr6_GL000254v2_alt  1557363 2 +   4827813 GG
s panTro5.chr6             30426429 2 + 175400573 GG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             30660647 2 + 173848474 GG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     369441 2 +   2037526 GG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             30922463 2 + 172585720 gg
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     461306 2 +   1495729 gg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     564930 2 -    863181 gg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29711571 2 -  71996105 GG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     361320 2 -   1829203 GG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30543155 2 + 171630274 TG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378341           347642 2 +    515838 TG
i saiBol1.JH378341         C 0 C 0
s otoGar3.GL873550           408538 2 +  18854210 GG
i otoGar3.GL873550         C 0 N 0

a score=11000.000000
s hg38.chr6_GL000254v2_alt  1557365 2 +   4827813 CC
s panTro5.chr6             30426431 2 + 175400573 CC
i panTro5.chr6             C 0 N 0
s panPan2.chr6             30660649 2 + 173848474 CC
i panPan2.chr6             C 0 N 0
s gorGor5.CYUI01015528v1     369443 2 +   2037526 CC
i gorGor5.CYUI01015528v1   C 0 N 0
s rheMac8.chr4             30922465 2 + 172585720 cc
i rheMac8.chr4             C 0 N 0
s macNem1.NW_012012100v1     461308 2 +   1495729 cc
i macNem1.NW_012012100v1   C 0 N 0
s cerAty1.NW_012002535v1     564932 2 -    863181 cc
i cerAty1.NW_012002535v1   C 0 N 0
s chlSab2.chr17            29711573 2 -  71996105 CC
i chlSab2.chr17            C 0 N 0
s colAng1.NW_012115577v1     361322 2 -   1829203 CC
i colAng1.NW_012115577v1   C 0 N 0
s calJac3.chr4             30543157 2 + 171630274 CC
i calJac3.chr4             C 0 N 0
s saiBol1.JH378341           347644 2 +    515838 CC
i saiBol1.JH378341         C 0 N 0

a score=231095.000000
s hg38.chr6_GL000254v2_alt  1721114 30 +   4827813 GGCCAGAGGTCCTTTTTTGCGGAGGCCTTT
s panTro5.chr6             30601938 30 + 175400573 GGCCAGAGGTCCTTTTTTGCGGAGGCCTTT
i panTro5.chr6             N 0 C 0
s panPan2.chr6             31025965 30 + 173848474 GGCCAGAGGTCCTTTTTTGCGGAGGCCTTT
i panPan2.chr6             N 0 C 0
s gorGor5.CYUI01015528v1     534615 30 +   2037526 GGCCAGAGGTCCTTTTTTGCAGAGGCCTTT
i gorGor5.CYUI01015528v1   N 0 C 0
s nomLeu3.chr1a            75186528 30 + 122973662 GGCCAGAGGTCCTTTCTTGCAGAGGCCTTT
i nomLeu3.chr1a            N 0 C 0
s rheMac8.chr4             31092360 30 + 172585720 GGCCAGAGGCCCTTTCTTGTAGAGGCCTTT
i rheMac8.chr4             N 0 C 0
s macFas5.chr4             30384422 30 - 170955103 GGCCAGAGGCCCTTTCTTGTAGAGGCCTTT
i macFas5.chr4             N 0 C 0
s macNem1.NW_012012100v1     639133 30 +   1495729 GGCCAGAGGCCCTTTCTTGTAGAGGCCTTT
i macNem1.NW_012012100v1   N 0 C 0
s cerAty1.NW_012002535v1     739592 30 -    863181 GGCCAGAGGCCCTTTCTTGCAGAGGCCTTT
i cerAty1.NW_012002535v1   N 0 C 0
s chlSab2.chr17            29875592 30 -  71996105 GGCCAGAGGCCCTTTCTTGCAGAGGCCTTT
i chlSab2.chr17            N 0 C 0
s manLeu1.NW_012107142v1     649418 30 -    735854 GGCCAGAGGCCCTTTCTTGCAGAGGCCTTT
i manLeu1.NW_012107142v1   N 0 C 0
s calJac3.chr4             30667226 30 + 171630274 GGCCAGAGGCCCTTTCTTGCAGAGGCCTTT
i calJac3.chr4             N 0 C 0
s aotNan1.NW_018496901v1     280455 30 -    486031 GGCCAGAGGCCCATTCTTGCAGAGGCCTTT
i aotNan1.NW_018496901v1   N 0 C 0
s otoGar3.GL873550           522777 30 +  18854210 GGCCAGAGATCCCATCTTGCAGAGGCTTTC
i otoGar3.GL873550         N 0 I 839

a score=1132298.000000
s hg38.chr6_GL000254v2_alt  1721144 160 +   4827813 AAAGATATTTATTCAGAAGAATGTACCACATGAGGCATTTGACTAATAAAAACACTGTTATTAACACTGACAATAAGCAAACACATATTTCTTTAGCTGTCTTGCAATTGGTACATTCTCCTCTTCCCATTGAGGAAGTATCTGCTCTACCCTTGCTTC--A
s panTro5.chr6             30601968 160 + 175400573 AAAGATATTTATTCAGAAGAATGTACCACATAAGGCATTTGACTAATAAAAACACTGTTATTAACACTGACAATAAGCAAACACATATTTCTTTAGCTGTCTTGCAATTGGTACATTCTCCTCTTCCCATTGAGGAAGTATCTGCTCTACCCTTGCTTC--A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31025995 160 + 173848474 AAAGATATTTATTCAGAAGAATGTACCACATGAGGCATTTGACTAATAAAAACACTGTTATTAACACTGACAATAAGCAAACACATATTTCTTTAGCTGTCTTGCAATTGGTACATTCTCCTCTTCCCATTGAGGAAGTATCTGCTCTACCCTTGCTTC--A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     534645 160 +   2037526 AAAGATATTTATTCAGAAGAATGTACTACATGAGGCATTGGACTAATAAAAACACTGTTATTAACACTGACAATAAGCAAACACATATTTCTTTAGCTGTCTTGCAATTGGTACATTCTCCTCTTCCCATTGAGGAAGTATCTGCTCTACCCTTGCTTC--A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75186558 162 + 122973662 AAAGATATTTATTGGGAAGAATGTACTACATGAGGCATTTGACTAATAAAAACACTGTTATTAACACTGACAATAAGCAAACACATATTTCTTTAGCTGCCTTGCAATTGGCACATTCTCCTTTTCCCATTGAGGAAGTATCTGCTGTAGCCTTGCTTCAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31092390 162 + 172585720 AAAGATATTTATTAAGAAGAATGTACTACATGGGACATTTGACTAAAAAAAACACTGTTATTAACACTGACAATAAGCAAACACATATTTCTTTAGCTGCCTTGCAATTGGTACATTCTCCGCTTTCCATTGAGGAAGTATCTGCTCTACCCTTGCTTCAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30384452 162 - 170955103 AAAGATATTTATTGGGAAGAATGTACTACATGGGACATTTGACTAAAAAAAACACTGTTATTAACACTGACAATAAGCAAACACATATTTCTTTAGCTGCCTTGCAATTGGTACATTCTCCGCTTTCCATTGAGGAAGTATCTGCTCTACCCTTGCTTCAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     639163 162 +   1495729 AAAGATATTTATTGGGAAGAATGTACTACATGGGACATTTGACTAAAAAAAACACTGTTATTAACACTGACAATAAGCAAACACATATTTCTTTAGCTGCCTTGCAATTGGTACATTCTCCGCTTTCCATTGAGGAAGTATCTGCTCTACCCTTGCTTCAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     739622 162 -    863181 AAAGATATTTATTGAGAAGAATGTACTACATGGGACATTTGACTAAAAAAAACACTGTTATTAACACTGACAATAAGCAAACACATATTTCTTTAGCTGCCTTGCAATTGGTACATTCTCCCGTTTCCATTGAGGAAGTATCTGCTCTACCCTTGCTTCAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29875622 162 -  71996105 AAAGATATTTATTGGGAAGAGTGTACTACATGGGGCATTTGACTAAAAAAAACACTGTTATTAACACTGACAATAAGCAAACACATATTTCTTTAGCTGCCTTGCAATTGGTACATTCTCCTGTTTCCATTGAGGAAGTATCTGCTCTACCCTTGCTTCAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     649448 162 -    735854 AAAGATATTTATTGGGAAGAATGTACTACATGGGACATTTGACTAAAGAAAACACTGTTATTAACACTGACAATAAGCAAACACATATTTCTTTAGCTGCCTTGCAATTGGTACATTCTCCCGTTTCCATTGAGGAAGTATCTGCTCTACCCTTGCTTCAGA
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30667256 162 + 171630274 AAAGCTATTTATTGGGAAGAACATACCACACAAGACATTTGACTAATAAAAACACTGTTATTAGCACTGACAATAAGCAAACATATATTTCTTTAACTGCTTTGTAATTGGTACATTCTCCTCTTTCTATTGAGAAAGTAAATGCTCTACCCTTGATTCAGA
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496901v1     280485 162 -    486031 AAAGCTATTTTTTGGGAAGAACATACCACACAAGACATTTGACTAATAAAAACACTGTTATTAGCACTGACAATAAGCAAACACATATTTCTTTAACTGCCTTGCAATTGGTACATTCTCCTCTTTCCATTGAGAAAGTAAATGCTCTACCCTTGATTCAGA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           523646 158 +  18854210 aaagaaaaaTTTTGAGAAGAATGTTCTACATAAGGAATTGGAGTTCTAAAAACAT--TTATAACTACTAGCAAAAAGCGAACAAATATTCCTTTAACTGCCTTGCCCTTGGTGCATTCTTCTCTTCCTGCTGAGAAAATATCTGCTCTGTTCTTGCGTCA--
i otoGar3.GL873550         I 839 I 1620

a score=58188.000000
s hg38.chr6_GL000254v2_alt  1721304 8 +   4827813 GATTAAAC
s panTro5.chr6             30602128 8 + 175400573 GATTAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31026155 8 + 173848474 GATTAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     534805 8 +   2037526 GATTAAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75186720 8 + 122973662 GATTAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31092552 8 + 172585720 GATTAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30384614 8 - 170955103 GATTAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     639325 8 +   1495729 GATTAAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     739784 8 -    863181 GATTAAAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29875784 8 -  71996105 GATTAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     649610 8 -    735854 GATTAAAC
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30667418 8 + 171630274 GATTAAAC
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496901v1     280647 8 -    486031 GATTAAAC
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550           523804 1620 +  18854210 I

a score=984367.000000
s hg38.chr6_GL000254v2_alt  1721312 142 +   4827813 ATTTTGAAACTCTCAGTTTTAACATTATTGAGCCTTACTATTATTGAAATAATTCTTTTCCCAAAACACCA-GACTACACTCAAACTCCAGAAGATGCCCCTAACCAAGACTAATATTCTGACATCAAAGGAAATCTGTGGAT
s panTro5.chr6             30602136 142 + 175400573 ATTTTGAAACTCTCAGTTTTAACATTATTGAGCCTTACTATTATTGAAATAATTCTTTTCCTAAAACACCA-GACTACACTCAAACTCCAGAAGATGCCCCTAACCAAGACTAATATTCTGACATCAAAGGAAATCTGTGGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31026163 142 + 173848474 ATTTTGAAACTCTCAGTTTTAACATTATTGAGCCTTACTATTATTGAAATAATTCTTTTCCTAAAACACCA-GACTACACTCAAACTCCAGAAGATGCCCCTAACCAAGACTAATATTCTGACATCAAAGGAAATCTGTGGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     534813 142 +   2037526 ATTTTGAAACTCTCAGTTTTAACATTATTGAGCCTTACTATTATTGAAATAATTCTTTTCCCAAAACACCA-GACTACACTCAAACTCCAGAAGATGCCCCTAACCAAGACTAATATTCTGACATCAAAGGAAATCTGTGGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75186728 143 + 122973662 CTTTTGAAACTCTCAGTTTTAACATTATTGAGCCTTATTATTATCGAAATAATTCTTTTCCCAAATTACCAGGACTACACTAAAACTCCAGAAGATGCCCCTAACCAAAACTAATATTCTGACATCAAAGGAAATCTGTGGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31092560 143 + 172585720 ATTTTGAAACTCTCAGTTTTAACATCATTGAGCCATATTATTATTGAAATAATTCTTTTCCCAAAGAACCAGGACTACACTAAAACTCCAGAAGATGCCCCTAACCAAGACTAATATTCTGACATCAAAGGAAATCTGTGGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30384622 143 - 170955103 ATTTTGAAACTCTCAGTTTTAACATCATTGAGCCATATTATTATTGAAATAATTCTTTTCCCAAAGAACCAGGACTACACTAAAACTCCAGAAGATGCCCCTAACCAAGACTAATATTCTGACATCAAAGGAAATCTGTGGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     639333 143 +   1495729 ATTTTGAAACTCTCAGTTTTAACATCATTGAGCCATATTATTATTGAAATAATTCTTTTCCCAAAGAACCAGGACTACACTAAAACTCCAGAAGATGCCCCTAACCAAGACTAATATTCTGACATCAAAGGAAATCTGTGGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     739792 143 -    863181 ATTTTGAAACTCTCAGTTTTAACATTATTAAGCCATATTATTATTGAAATAATTCTTTTCCCAAAGAACCAGGACTACACTAAAACTCCAGAAGATGCCCCTAGCCAAGACTAATATTCTGACATCAAAGGAAATCTGTGGAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29875792 143 -  71996105 ATTTTGAAACTCTCAGTTTTAATATTATTAAGCCATATTATTATTGAAATAATTCTTTTCCCAAAGAACCAGGACTACACTAAAACTCCAGAAGATGCCCCTAACCAAGACTAATATTCTGACATCAAAGGAAATCTGTGGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     649618 143 -    735854 ATTTTGAAACTCTCAGTTTTAACATTATTAAGCCATATTATTATTGAAATAATTCTTTTCCCAAAGAACCAGGACTACACTAAAACTCCAGAAGATGCCCCTAGCCAAGACTAATATTCTGACATCAAAGGAAATCTGTGGAT
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30667426 142 + 171630274 ATCTTGAAACTTTCAGCTTCCACATTATTGAGCTTTACTTTTATTGAAATAACT-TTTTCCCACAGTACCACGACTACACTGTAACTCCAGAAGATGCCCCTAACCAAGACTAATACTCTGAAATCAAAGGAAATCTGTGGAT
i calJac3.chr4             C 0 I 630
s aotNan1.NW_018496901v1     280655 142 -    486031 ATCTTGAAACTCTCAGCTTCCACATTATTGAGTTTTACTTTTATTGAAATAACT-TTTTCCCAAAGTACCAGGACTACACTATAACTCCAGAAGATGCCCCTAACCAAGACTAATACTCTGAAATCAAAGGAAATCTGTGGAT
i aotNan1.NW_018496901v1   C 0 I 335
s otoGar3.GL873550           525424 138 +  18854210 ATTTTCTAAATTTCAGCCTCAACATGA-TAAACTTTGTT----TTGAAGCCATTCTTTTCCCAGAATGCCAGGAATTTGCCACAACGCCAGAATAGACCCCCAAGCAAAACTAATATTCTGTAATTGAAGGAAAACTTTGGAT
i otoGar3.GL873550         I 1620 C 0

a score=694215.000000
s hg38.chr6_GL000254v2_alt  1721454  99 +   4827813 AAGATATTGGGAACTTCTGAAAAATTTTAGTAGGGCTATGCCTAGAGAATTTTCATGATCTTAACAAATCT-----------TGCTCATTCAGCAAGTCCTTAGAGAGCC
s panTro5.chr6             30602278  99 + 175400573 AAGATATTGGGAACTTCTGAAAAATTTTAGTAGGGCTATGCCTAGAGAATTTTCATGATCTTAACAAATCT-----------TGCTCGTTCAACAAGTCCTTAGAGAGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31026305  99 + 173848474 AAGATATTGGGAACTTCTGAAAAATTTTAGTAGGGCTATGCCTAGAGAATTTTCATGATCTTAACAAATCT-----------TGCTCGTTCAACAAGTCCTTAGAGAGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     534955  99 +   2037526 AAGATATTGGGAACTTCTGAAAAATTTTAGCAGGGCTATGCCTAGAGAATTTTCATGATCTTAACAAATCT-----------TGCTCGTTCAACAAGTCCTTAGAGAGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75186871  99 + 122973662 AAGATATTGGGAACTTCCGAAAAATTTTAGTAGGGCTATGCCTAGAGAATTTTCACGATCTTAACAAATCT-----------TGCTCATTCAACAAGTCCTTGGAGAGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31092703  99 + 172585720 AAGATATTGGGAACTTCTGAAAAATGTTAGTAGGGCTATGACTGGAGAATTTTCACAATCTTAACAAATCT-----------TGCTCATTCAACAAGCCCTTGGAGAGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30384765  99 - 170955103 AAGATATTGGGAACTTCTGAAAAATGTTAGTAGGGCTATGACTGGAGAATTTTCACAATCTTAACAAATCT-----------TGCTCATTCAACAAGCCCTTGGAGAGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     639476  99 +   1495729 AAGATATTGGGAACTTCTGAAAAATGTTAGTAGGGCTATGACTGGAGAATTTTCACAATCTTAACAAATCT-----------TGCTCATTCAACAAGCCCTTGGAGAGCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     739935  99 -    863181 AAGATATTGGGAACTTCTGAAAAATGTTAGTAGGGCTATGACTGAAGAATTTTCACAATCTTAACAAATCT-----------TGCTCATTCAACAAGCCCTTGGAGAGCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29875935  99 -  71996105 AAGATATTGGGAACTTCTGAAAAATGTTAGTAGGACTATGACTGGAGAATTTTCACAATCTTAACAAATCT-----------TGCTCATTCAACAAGCCCTTGGAAAGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     649761  99 -    735854 AAGATATTGGGAACTTCTGAAAAATGTTAGTAGGGCTATGACTGAAGAATTTTCACAATCTTAACAAATCT-----------TGCTCATTCAACAAGCCCTTGGAGAGCC
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30668198  93 + 171630274 aagaTATTGGGAACTTCTGTAAAATTTTAGTTGGACTA------GAGAATTTTTATGATCTTAACAAATCT-----------TGCTTATTCAACAAGTCCTTGGAGAGCC
i calJac3.chr4             I 630 C 0
s aotNan1.NW_018496901v1     281132  93 -    486031 aAGATATTGGGAACTTCTGTAAAATTTTAGTTGGACTA------GAGAATTTTTACAATCTTAACAAATCT-----------TGCTTATTCAACAAGTCCTTGGAGAGCC
i aotNan1.NW_018496901v1   I 335 C 0
s otoGar3.GL873550           525562 110 +  18854210 AAGATGTTCAGAACATCTATAAAATTTTAGTTGGGCTATTACTAGAGAATTTTCACAAAATCAACAAATTTTACAAAAGGACTGTTGATCCAACAAGTCTTCAGAGATCC
i otoGar3.GL873550         C 0 C 0

a score=421574.000000
s hg38.chr6_GL000254v2_alt  1721553 66 +   4827813 TTCATGGGAACCTATGAAAAAGAAAG-TCCTCAATGTATTACAT-GGAAAATAACGATAGCAACAACT
s panTro5.chr6             30602377 66 + 175400573 TTCATGGGAACCTATGAAAAAGAAAG-TCCTCAATGTATTACAT-GGAAAATAACAATAGCAACAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31026404 66 + 173848474 TTCATGGGAACCTATGAAAAAGAAAG-TCCTCAATGTATTACAT-GGAAAATAACAATAGCAACAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535054 66 +   2037526 TTCATGGGAACCTATGAAAAAGAAAG-TCCTCAATGTATTACAT-GGAAAATAACAATAGCAACAACT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75186970 66 + 122973662 TTCATGGGAACCTATGAAAAAGAAAC-TCCTCAATGTATTACAT-GGAAAATAACAATAGCAACAACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31092802 66 + 172585720 TTCATGGGAACCTGTGAAAAAGAAAC-TCCTCAATGTATTACAT-GGAAAATAACAATAGCAACAACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30384864 66 - 170955103 TTCATGGGAACCTGTGAAAAAGAAAC-TCCTCAATGTATTACAT-GGAAAATAACAATAGCAACAACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     639575 66 +   1495729 TTCATGGGAACCTGTGAAAAAGAAAC-TCCTCAATGTATTACAT-GGAAAATAACAATAGCAACAACT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     740034 65 -    863181 TTCATGGGAA-CTGTGAAAAAGAAAT-TCCTCAATGTATTACAT-GGAAAATAACAATAGCAACAACT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29876034 66 -  71996105 TTCATGGGAACCTGTGAAAAAGAAAC-TCCTCAATGTATTACAT-GGAAAATAACAATAGCAACAACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     649860 65 -    735854 TTCATGGGAA-CTGTGAAAAAGAAAT-TCCTCAATGTATTACAT-GGAAAATAACAATAGCAACAACT
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30668291 68 + 171630274 TTCATGGGAACTTATAAAAAATAAACTTTCTCAATGTATTACATAAAAAAATAACAAAAGCAACAACT
i calJac3.chr4             C 0 I 307
s aotNan1.NW_018496901v1     281225 67 -    486031 TTCATGGGAACCTGTAAAAAAGAAACTTTCTCAATGTATTACAT-GAAAAATAACAAAAGCAACAACT
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550           525672  0 +  18854210 C

a score=96200.000000
s hg38.chr6_GL000254v2_alt  1721619 12 +   4827813 ATAATaataata
s panTro5.chr6             30602443 12 + 175400573 ATAATaataata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31026470 12 + 173848474 ATAATaataata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535120 12 +   2037526 ATAATaataata
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75187036 12 + 122973662 GTAATaataata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31092868 12 + 172585720 ATAATaataata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30384930 12 - 170955103 ATAATaataata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     639641 12 +   1495729 ATAATaataata
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     740099 12 -    863181 ATAATaataata
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29876100 12 -  71996105 ATAATaataata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     649925 12 -    735854 ATAATaataata
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30668666 12 + 171630274 ataataataata
i calJac3.chr4             I 307 C 0
s cebCap1.NW_016107755v1    1092869 12 -   1771730 aTAATaataata
i cebCap1.NW_016107755v1   N 0 C 0
s aotNan1.NW_018496901v1     281292 12 -    486031 ACAATAATAATA
i aotNan1.NW_018496901v1   C 0 I 311
e otoGar3.GL873550           525672  0 +  18854210 C

a score=21083.000000
s hg38.chr6_GL000254v2_alt  1721631 4 +   4827813 gtgg
s panTro5.chr6             30602455 4 + 175400573 gtgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31026482 4 + 173848474 gtgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535132 4 +   2037526 gtgg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75187048 4 + 122973662 gtgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31092880 4 + 172585720 gcgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30384942 4 - 170955103 gcgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     639653 4 +   1495729 gcgg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     740111 4 -    863181 gtgg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29876112 4 -  71996105 gtgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     649937 4 -    735854 gtgg
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30668678 4 + 171630274 atga
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1092881 4 -   1771730 atga
i cebCap1.NW_016107755v1   C 0 C 0
e otoGar3.GL873550           525672 0 +  18854210 C
e aotNan1.NW_018496901v1     281304 311 -    486031 I

a score=1398552.000000
s hg38.chr6_GL000254v2_alt  1721635 194 +   4827813 ctgcatttaaagggcacttgctgtattccaggcattggcttaagtacctacataagttattttgttcagtatttatcacaaccatatgaaaaaaatgttcttatccacaat-----aaagaaatgaagtttaggctgggtgttgtggctcacacctgtaatcccagcactttgggaggccgaggagggcggatcacctg
s panTro5.chr6             30602459 194 + 175400573 ctgcatttaaagggcacttgctgtattccaggcattggcttaagtacctacataagttattttgttcggtatttatcacaaccatatgaaaaaaatgttcttatccacaag-----aaagaaatgaagtttaggctgggtgttgtggctcacacctgtaatcccagcactttgggaggccgaggagggcggatcacctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31026486 194 + 173848474 ctgcatttaaagggcacttgctgtattccaggcattggcttaagtacctacataagttattttgttcggtatttatcacaaccatatgaaaaaaatgttcttatccacaag-----aaagaaatgaagtttaggctgggtgttgtggctcacacctgtaatcccagcactttgggaggccgaggagggcggatcacctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535136 193 +   2037526 ctgcatttaaagggcacttgctgtattccaggcattggcttaagtacctacataagttattttgttcagtatttatcacaaccatat-aaaaaaatgttcttatccacaat-----aaagaaatgaagtttaggctgggtgttgtggctcacacctgtaatcccagcactttgggaggccaaggagggcagatcacctg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75187052 194 + 122973662 ctgcatttaaagggcacttgctgtattccaggcattggcttaagtacctacataggttattttgttcagtatttatcacaaccatatgaaaagaatgttcttatccacaat-----aaagaaatgaagtttagggcgggtgtggtggctcacacatgtaatcccagcactttgggaggttgagaagggcagatcacctg
i nomLeu3.chr1a            C 0 M 134
s rheMac8.chr4             31092884 194 + 172585720 ctgcatttaaagggcactggctgtattctaggcattggcttaactacctacgtaggttatttcattcagtatttatcacaaccatatgaaaagaatgttctcatccacaat-----aaagaaatgaagtttaggctgggtgtggtggctcacacatgtaattccagcactttgggaggttgagaagggcagatcacctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30384946 194 - 170955103 ctgcatttaaagggcactggctgtattctaggcattggcttaactacctacataggttatttcattcagtatttatcacaaccatatgaaaagaatgttctcatccacaat-----aaagaaatgaagTTTAggctgggtgtggtggctcacacatgtaattccagcactttgggaggttgagaagggcagatcacctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     639657 194 +   1495729 ctgcatttaaagggcactggctgtattctaggcattggcttaactacctacataggttatttcattcagtatttatcacaaccatatgaaaagaatgttctcatccacaat-----aaagaaatgaagtttaggctgggtgtggtggctcacacatgtaattccagcactttgggaggttgagaagggcagatcacctg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     740115 191 -    863181 ctgcatttaaagggcactggctgtattctaggcattggcttaagtacctacataggttatttcattcagtatttatcacaaccatatgaaaagaatgttcttgtccacaat-----aaagaaatgaagtttaggctaggtgtggtggctcacacatgtaattc---cactttgggaggttgagaagggcagatcacctg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29876116 194 -  71996105 ctgcatttaaagggcactggctgtattctaggcattggcttaagtacctacataggttattttgttcagtatttatcacaaccatatgaaaagaatgttcttatccacaat-----aaagaaatgaagtttaggctgggtgtggtggctcacacatgtaattccagcactttgggaggttgagaagggcagatcacctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     649941 191 -    735854 ctgcatttaaagggcactggctgtattctaggcattggcttaagtacctacataggttatttcattcagtatttatcacaaccatatgaaaagaatgttcttgcccacaat-----aaagaaatgaagtttaggctaggtgtggtggctcacacatgtaattc---cactttgggaggttgagaagggcagatcacctg
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30668682 198 + 171630274 ctgcatttaaagggcacttcctgtattccaagcgttggcttaagtacctacataggttattttgttcagtgtttatcacaaccacatgaaaataatgttcttatccataataaaaaaaaaaaaagaagcctaggccaggtacagtgactaatgcctgtaatcccagcacttt-ggaagccgaggcaggtggatcacctg
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1092885 193 -   1771730 ctgcattgaaagggcacttgctgtattccaaacattggcttaagtacctacataggttattttgttcagtgtttatcatcaccacatgaaaagaatgttcttatccataat-----aaataaatgaagCCTAggccaggtacagtgactcacgcctgtaatcccagcacttt-ggaggccgaggcagatggatcatctg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     281615 193 -    486031 ctgcatttaaagggcacttgctgtattccaagcattggtttaagtacctacataggttattttgttcagtgtttatcacaaccacatgaaaagaatgttcttatccataat-----aaagaaatgaagcctaggccaggtacagtgactcacgcctgtaataccagcacttt-ggaggccgaggcaggtggatcacctg
i aotNan1.NW_018496901v1   I 311 C 0
e otoGar3.GL873550           525672   0 +  18854210 C

a score=1044933.000000
s hg38.chr6_GL000254v2_alt  1721829 173 +   4827813 aggtcaagagttcgagacaagcctggctaacatggtgaaatcctgtctctactaaaaatacaaaattagctgggcttggtggcgggtgcctgtaattccagctacttgggaggctgaggcgggagaaacacttgaacccgggaggcagaggttgtggtgagctaagattgcac
s panTro5.chr6             30602653 173 + 175400573 aggtcaagagttcgagacaagcctggctaacatggtgaaatcctgtctctactaaaaatacaaaattagctgggcttggtggcgggcgcctgtaattccagctacttgggaggctgaggcgggagaaacacttgaacctgggaggcagaggttgtggtgagctaagattgcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31026680 173 + 173848474 aggtcaagagttcgagacaagcctggctaacatggtgaaatcctgtctctactaaaaatacaaaattagctgggcttggtggcgggcgcctgtaattccagctacttgggaggctgaggcgggagaaacacttgaacctgggaggcagaggttgtggtgagctaagattgcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535329 173 +   2037526 aggtcaagagttcaagacaagcctggctaacatggtgaaatcctgtctctactaaaaatacaaaattagctgggcttggtggcgggcgcctgtaattccaactacttgggaggctgaggcgggagaaacacttgaaccagggaggcagaggttgtggtgagctaagattgcac
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31093078 173 + 172585720 aggtcaggagttcgagacaagcctggccaacatgatgaaaccctgtctctactaaaaatacaaaattagccaggtgtggtagcacgcacctgtaattccagctactcaggaggctgaggcgagataatcactggaacctgggaggcggaggttgcagtgagctgagattgcac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30385140 173 - 170955103 aggtcaggagttcgagacaagcctggccaacatgatgaaaccctgtctctactaaaaatacaaaattagccaggtgtggtagcacgcacctgtaattccagctactcaggaggctgaggtgagagtatcactggaacctgggaggcggaggttgcagtgagctgagattgcac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     639851 173 +   1495729 aggtcaggagttcgagacaagcctggccaacatgatgaaaccctgtctctactaaaaatacaaaattagccaggtgtggtagcacgcacctgtaattccagctactcaggaggctgaggcgagagaatcactggaacctgggaggcggaggttgcagtgagctgagattgcac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     740306 173 -    863181 aggtcaggagttcgagacaagcctggccaacatgatgaaaccccgtctctactaaaaatacaaaattagccaggcgtggtagcacgcacctgtaattccagctactcaggaggctgaggcaggagaatcactggaacttgggaggcggaggttgcagtgagctgagattgaac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29876310 173 -  71996105 aggtcaggagttcaagacaagcctggccaacatgatgaaaccccgtctctactaaaaatacaaaattagccaggcgtggtagcacacacctgtaattccagctactcaggaggctgaggcgagagaatcactggaacccgggaggcggaggttgcagtgagctgagattgcac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     650132 173 -    735854 aggtcaggagttcgagacaagcctggccaacatgatgaaaccccgtctctactaaaaatacaaaattagccaggcgtggtagcacgcacctgtaattccagctactcaggaggctgaggcaggagaatcactggaacttgggaggcggaggttgcagtgagctgagattgaac
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30668880 173 + 171630274 aggtcaggagtttcagaccagcctggccaacatggtgaaaccccatctttactgaaaatacaaaattatccaggcatggtggcatgtgcctgtaatccaagctgcttgtgagcctgaggcaggagaatcacttgaacccatgaggcagaggttgcagtgaaccgagattgtgc
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1093078 173 -   1771730 aggtcaggagtttcagaccagcctggccaacatggtaaaaccccatctttactaaaaatacaaaattatccaggagtggtggcatgtgcctgtaatcccagctccttgtgagcctgagacaggcgaatcacttgaacccacgaggcagaggttgcagtgaactgagattgagc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     281808 173 -    486031 aggtcaggagtttcagaccaggctggccaacatggtgaaaccccgtctttactaaaaatacaaaattatccaggtgtggtggcatgcacctgtaatcccagctgcttgtgagcctgaggcaggagaatcacttgaacctgcgaggcagaggttgcagtgaaccgagattgcac
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550           525672   0 +  18854210 C
e nomLeu3.chr1a            75187246 134 + 122973662 M

a score=285997.000000
s hg38.chr6_GL000254v2_alt  1722002 38 +   4827813 cattgcactccagtctgggcaaagagagcaaaactctg
s panTro5.chr6             30602826 38 + 175400573 cattgcactccagtctgggcaaagagagcaaaactctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31026853 38 + 173848474 cattgcactccagtctgggcaaagagagcaaaactctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535502 38 +   2037526 cattgcactccagtctgggcaaagaaagcaaaactctg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75187380 38 + 122973662 CATTGCACTCCAGTCTGGGCAAAAAGAGCGAAACTTTg
i nomLeu3.chr1a            M 134 C 0
s rheMac8.chr4             31093251 38 + 172585720 cattgcactccagggtaggcaaaaagagcaaaactctg
i rheMac8.chr4             C 0 I 137
s macFas5.chr4             30385313 38 - 170955103 cattgcactccagggtaggcaaaaagagcaaaactcTg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     640024 38 +   1495729 cattgcactccagggtaggcaaaaagagcaaaactctg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     740479 38 -    863181 cattgcactccaggctaggcaaaaagagcaaaactctg
i cerAty1.NW_012002535v1   C 0 I 251
s chlSab2.chr17            29876483 38 -  71996105 cattgcactccaggctaggcaaaaagagcaaaactctg
i chlSab2.chr17            C 0 I 208
s manLeu1.NW_012107142v1     650305 38 -    735854 cattgcactccaggctaggcaaaaagagcaaaactctg
i manLeu1.NW_012107142v1   C 0 I 437
s calJac3.chr4             30669053 38 + 171630274 cattgcactccagtctgggcaaaaagagcaaaactcca
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1093251 38 -   1771730 cattgcactccagtctgggcaaaaagagtaaaactcca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     281981 38 -    486031 cattgcactccagtctgggcaaaaagagcaaaactcca
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550           525672  0 +  18854210 C

a score=2352.000000
s hg38.chr6_GL000254v2_alt  1722040 2 +   4827813 tc
s panTro5.chr6             30602864 2 + 175400573 tc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31026891 2 + 173848474 tc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535540 2 +   2037526 tc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75187418 2 + 122973662 aa
i nomLeu3.chr1a            C 0 I 13
s calJac3.chr4             30669091 2 + 171630274 tc
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1093289 2 -   1771730 tc
i cebCap1.NW_016107755v1   C 0 I 97
s aotNan1.NW_018496901v1     282019 2 -    486031 tc
i aotNan1.NW_018496901v1   C 0 I 48
e otoGar3.GL873550           525672 0 +  18854210 C
e manLeu1.NW_012107142v1     650343 437 -    735854 I
e chlSab2.chr17            29876521 208 -  71996105 I
e cerAty1.NW_012002535v1     740517 251 -    863181 I
e macNem1.NW_012012100v1     640062 0 +   1495729 C
e macFas5.chr4             30385351 0 - 170955103 C
e rheMac8.chr4             31093289 137 + 172585720 I

a score=-1164.000000
s hg38.chr6_GL000254v2_alt  1722042 3 +   4827813 tca-
s panTro5.chr6             30602866 3 + 175400573 tca-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31026893 3 + 173848474 tca-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535542 3 +   2037526 tca-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75187433 3 + 122973662 aaa-
i nomLeu3.chr1a            I 13 C 0
s macFas5.chr4             30385351 1 - 170955103 --a-
i macFas5.chr4             C 0 I 4
s macNem1.NW_012012100v1     640062 1 +   1495729 --a-
i macNem1.NW_012012100v1   C 0 I 4
s calJac3.chr4             30669093 2 + 171630274 --aa
i calJac3.chr4             C 0 C 0
e otoGar3.GL873550           525672 0 +  18854210 C
e aotNan1.NW_018496901v1     282021 48 -    486031 I
e cebCap1.NW_016107755v1    1093291 97 -   1771730 I
e manLeu1.NW_012107142v1     650343 437 -    735854 I
e chlSab2.chr17            29876521 208 -  71996105 I
e cerAty1.NW_012002535v1     740517 251 -    863181 I
e rheMac8.chr4             31093289 137 + 172585720 I

a score=3276.000000
s hg38.chr6_GL000254v2_alt  1722045 1 +   4827813 a
s panTro5.chr6             30602869 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31026896 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535545 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75187436 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30385356 1 - 170955103 a
i macFas5.chr4             I 4 I 131
s macNem1.NW_012012100v1     640067 1 +   1495729 a
i macNem1.NW_012012100v1   I 4 I 42
s colAng1.NW_012115577v1    1298815 1 +   1829203 a
i colAng1.NW_012115577v1   N 0 C 0
s calJac3.chr4             30669095 1 + 171630274 a
i calJac3.chr4             C 0 C 0
e otoGar3.GL873550           525672 0 +  18854210 C
e aotNan1.NW_018496901v1     282021 48 -    486031 I
e cebCap1.NW_016107755v1    1093291 97 -   1771730 I
e manLeu1.NW_012107142v1     650343 437 -    735854 I
e chlSab2.chr17            29876521 208 -  71996105 I
e cerAty1.NW_012002535v1     740517 251 -    863181 I
e rheMac8.chr4             31093289 137 + 172585720 I

a score=8190.000000
s hg38.chr6_GL000254v2_alt  1722046 2 +   4827813 aa
s panTro5.chr6             30602870 2 + 175400573 aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31026897 2 + 173848474 aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535546 2 +   2037526 aa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75187437 2 + 122973662 aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31093426 2 + 172585720 aa
i rheMac8.chr4             I 137 C 0
s macFas5.chr4             30385488 2 - 170955103 aa
i macFas5.chr4             I 131 C 0
s macNem1.NW_012012100v1     640110 2 +   1495729 aa
i macNem1.NW_012012100v1   I 42 C 0
s colAng1.NW_012115577v1    1298816 2 +   1829203 aa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30669096 2 + 171630274 aa
i calJac3.chr4             C 0 C 0
e otoGar3.GL873550           525672 0 +  18854210 C
e aotNan1.NW_018496901v1     282021 48 -    486031 I
e cebCap1.NW_016107755v1    1093291 97 -   1771730 I
e manLeu1.NW_012107142v1     650343 437 -    735854 I
e chlSab2.chr17            29876521 208 -  71996105 I
e cerAty1.NW_012002535v1     740517 251 -    863181 I

a score=110466.000000
s hg38.chr6_GL000254v2_alt  1722048  53 +   4827813 gaaagaaa-gaagga-aggaaggaggga----------------------------------------------------------------------------gggagggaag-------gaaggaaggaaggaagg
s panTro5.chr6             30602872  73 + 175400573 gaaagaaa-gaagga-aggaaggaaggaaggaa---------------------------------------------------ggaaggaaggaagg-----agggagggagg-------gagggaaggaaggaagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31026899  77 + 173848474 gaaagaaa-gaagga-aggaaggaaggaaggaa-----------------------------------------------ggagggagggagggaggg-----aaggaaggaag-------gaaggaaggaaggaagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535548  26 +   2037526 gaaataaa-gaagga-aggaaggaagga--------------------------------------------------------------------------------------------------------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75187439 129 + 122973662 gaaagaaa-gaaaga-aagaaagaaagaaagaaagaaagaaagaaagaGAAACAagggagggagggagggagggagggagggagggagggagggagggagAGAaaggaaggaag-------gaaggaaggaaggaagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31093428  53 + 172585720 gaaagaaa-gaggga-aggaaggaagga----------------------------------------------------------------------------aggaaggaag-------gaaggaaggaaggaagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30385490  53 - 170955103 gaaagaaa-gaggga-aggaaggaagga----------------------------------------------------------------------------aggaaggaag-------gaaggaaggaaggaagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     640112  61 +   1495729 gaaagaaaggaagga-aggaaggaagga----------------------------------------------------------------------------aggaaggaagaaagaaagagggaaggaaggaagg
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29876729  53 -  71996105 gaaggaag-gaagga-aggaaggaagga----------------------------------------------------------------------------aggaaggaag-------gaaggaaggaaggaagg
i chlSab2.chr17            I 208 C 0
s colAng1.NW_012115577v1    1298818  53 +   1829203 gaaagaaa-gaaaga-aagaaagaaaga----------------------------------------------------------------------------aGGAGAGAAG-------GCGggaaggaaggaagg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30669098  39 + 171630274 gaaagaca-ggaagacagaaaagaaaga----------------------------------------------------------------------------aagagagaaa-------ag---------------
i calJac3.chr4             C 0 C 0
e otoGar3.GL873550           525672   0 +  18854210 C
e aotNan1.NW_018496901v1     282021  48 -    486031 I
e cebCap1.NW_016107755v1    1093291  97 -   1771730 I
e manLeu1.NW_012107142v1     650343 437 -    735854 I
e cerAty1.NW_012002535v1     740517 251 -    863181 I

a score=63715.000000
s hg38.chr6_GL000254v2_alt  1722101 19 +   4827813 aaggaaggaaggaaggaag
s panTro5.chr6             30602945 19 + 175400573 aaggaaggaaggaaggaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31026976 19 + 173848474 aaggaaggaaggaaggaag
i panPan2.chr6             C 0 C 0
s nomLeu3.chr1a            75187568 19 + 122973662 aaggaaggaaggaaggaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31093481 19 + 172585720 aaggaaggaaggaaggaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30385543 19 - 170955103 aaggaaggaaggaaggaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     640173 19 +   1495729 aaggaaggaaggaaggaag
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29876782 19 -  71996105 aaggaaggaaggaaggaag
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1    1298871 19 +   1829203 aaggaaggaaggaagaaag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30669137 14 + 171630274 --aaaaggaa--aagaaa-
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496901v1     282069 12 -    486031 ----aaggaa--aagaaa-
i aotNan1.NW_018496901v1   I 48 C 0
e otoGar3.GL873550           525672  0 +  18854210 C
e cebCap1.NW_016107755v1    1093291 97 -   1771730 I
e manLeu1.NW_012107142v1     650343 437 -    735854 I
e cerAty1.NW_012002535v1     740517 251 -    863181 I
e gorGor5.CYUI01015528v1     535574  0 +   2037526 C

a score=83390.000000
s hg38.chr6_GL000254v2_alt  1722120 28 +   4827813 gaaggaaggaaggaaggaaggaagtcaa-
s panTro5.chr6             30602964 28 + 175400573 gaaggaaggaaggaaggaagtaagtcaa-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31026995 28 + 173848474 gaaggaaggaaggaaggaaggaagtcaa-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535574  6 +   2037526 ----------------------agtcaa-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75187587 28 + 122973662 gaaggaagaaaggaaggaaggaagaagg-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31093500 24 + 172585720 ----ggaggaaggaagggaggaaggaag-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30385562 24 - 170955103 ----gaaggaaggaaggaaggaaggaag-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     640192 24 +   1495729 ----ggaggaaggaaggaaggaaggaag-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     740768 28 -    863181 gaaggcaggaaggagggaaggaaggaag-
i cerAty1.NW_012002535v1   I 251 C 0
s chlSab2.chr17            29876801 28 -  71996105 gaagggaggaaggaaagaaggaaggaag-
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1    1298890 24 +   1829203 ----gaaggaaagaaggaaggaaggaag-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30669151 25 + 171630274 ----gaaaagaaaaggaaaggaaagaaat
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496901v1     282081 25 -    486031 ----gaaaagaaaaggaaaggaaagaaat
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550           525672  0 +  18854210 C
e cebCap1.NW_016107755v1    1093291 97 -   1771730 I
e manLeu1.NW_012107142v1     650343 437 -    735854 I

a score=85295.000000
s hg38.chr6_GL000254v2_alt  1722148 13 +   4827813 gaagtctacaaag
s panTro5.chr6             30602992 13 + 175400573 gaagtctacaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31027023 13 + 173848474 gaagtctacaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535580 13 +   2037526 gaagTCTACAAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75187615 13 + 122973662 aaAGTCTAGAAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31093524 13 + 172585720 gaagTCTATAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30385586 13 - 170955103 gaagTCTATAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     640216 13 +   1495729 aaagTCTATAAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     740796 13 -    863181 gaaTTCTATATGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29876829 13 -  71996105 gaagTCTATAAGG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1    1298914 13 +   1829203 gaagTCTATAAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30669176 13 + 171630274 gaaGTCTAGAAAG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1093388 13 -   1771730 gaagtctagaaag
i cebCap1.NW_016107755v1   I 97 C 0
s aotNan1.NW_018496901v1     282106 13 -    486031 gaaGTCTAGAAAG
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550           525672  0 +  18854210 C
e manLeu1.NW_012107142v1     650343 437 -    735854 I

a score=33349.000000
s hg38.chr6_GL000254v2_alt  1722161 4 +   4827813 tata
s panTro5.chr6             30603005 4 + 175400573 tata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31027036 4 + 173848474 tata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535593 4 +   2037526 TATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75187628 4 + 122973662 TATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31093537 4 + 172585720 TATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30385599 4 - 170955103 TATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     640229 4 +   1495729 TATA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     740809 4 -    863181 TACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29876842 4 -  71996105 TATA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1    1298927 4 +   1829203 TATA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30669189 4 + 171630274 TATA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1093401 4 -   1771730 TATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     282119 4 -    486031 TATA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     532709 4 -   1411461 TATA
i proCoq1.NW_012149775v1   N 0 C 0
e otoGar3.GL873550           525672 0 +  18854210 C
e manLeu1.NW_012107142v1     650343 437 -    735854 I

a score=1661290.000000
s hg38.chr6_GL000254v2_alt  1722165 173 +   4827813 ggtaacttgctcaagaaaattaggttcagaaagtttaagtaacttgcccagggtaacacaattatgaagatttgaggccagaattcagttccaggcagttttgttcta-----gatctattgctcttcagccactatAGTGTCATGCCAAGAC-TGGCCTAAAGTCGTGTCTTCTGCTC
s panTro5.chr6             30603009 173 + 175400573 ggtaacttgctcaagaaaattaggttcagaaagtttaagtaacttgcccagggtaacacaattatgaagatttgaggccagaattcagttccaggcagttttgctcta-----gatctattgctcttcagccactataGTGTCATGCCAAGAC-TGGCCTAAAGTCGTGTCTTCTGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31027040 173 + 173848474 ggtaacttgctcaagaaaattaggttcagaaagtttaagtaacttgcccagggtaacacaattatgaagatttgaggccagaattcagttccaggcagttttgctcta-----gatctattgctcttcagccactataGTGTCATGCCAAGAC-TGGCCTAAAGTCGTGTCTTCTGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535597 173 +   2037526 GGTAACTTGCTCaagaaaattaggttcagaaagtttaagtaacttgcccagggtaacacaattatgaagatttgaggccagaattcagttccaggcagttttgttcta-----gatctattgctcttcagccactatCGTGTCATGCCGAGAC-TGGCCTAAAGTCGTGTCTTCTGCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75187632 173 + 122973662 GGTAACTTGCTCaagaaaattaggttcagaaaggttaagtaacttgcccagggtaacacaattatgaagatttgaggccagaattcagttccaggcagttttgttcta-----gatctattgctcttcagccactatAGTGTCATGCCAAGAC-TGGCCTAAAGTCGTGTCTTCTGCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31093541 173 + 172585720 GGTAACTTGCTCaagaaaattaggttcagaaaggtgaagtaactcgcccatggtaatacaattatgaagatctgaggccagaattgagttccaggcagttttgttcta-----gatctattgctcttcagccactatAGTGTCATGCCAAGAC-TGGCCTAAACTCGTCTCTTCTGCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30385603 173 - 170955103 GGTAACTTGCTCaagaaaattaggttcagaaaggtgaagtaactcgcccatggtaatacaattatgaagatctgaggccagaattgagttccaggcagttttattcta-----gatctattgctcttcagccactatAGTGTCATTCCAAGAC-TGGCCTAAACTCGTCTCTTCTGCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     640233 173 +   1495729 GGTAACTTGCTCaagaaaattaggttcagaaaggtgaagtaactcgcccatggtaatacaattatgaagatctgaggccagaattgagttccaggcagttttattcta-----gatctattgctcttcagccactatAGTGTCATGCCAAGAC-TGGCCTAAACTCGTCTCTTCTGCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     740813 173 -    863181 GGTAACTTGCTCaagaaaattaggttcagaaaagttaagtaactcgcccatggtaacacaattatgaatatctgaggccagaattgagttacaggcagttttgtccta-----gatctattgctcttcagccactatAGTGTCATGCTAAGAC-TGGCCTAAAGTCATCTCTTCTGCTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29876846 173 -  71996105 GGTAACTTGCTCAagaaaattgggttcagaaaggttaagtaactcgcccatggtaacacaattatgaagatctgaggccagaattgagttccaggcagttttgttcta-----gatctattgctcttcagccactatAGTGTCATGCCAAAAC-TGGCCTAAACTCGTCTCTTCTGCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     650780 174 -    735854 GGTAACTTGCTCaagaaaattaggttcagaaaagttaagtaactcgcccatggtaacacaattatgaatatctgaggccagaattgagttacaggcagttttgtccta-----gatctattgctcttcagccactatAGTGTCATGCCAAGACTTGGCCTAAAGTCATCTCTTCTGCTT
i manLeu1.NW_012107142v1   I 437 C 0
s colAng1.NW_012115577v1    1298931 173 +   1829203 GGTAATTTGCTCAagaaaactaggttcagaaaggttaagtaactcgcccatggtaacacaattatgaagatctgaggccagaattgagttccaggcagttttgttcta-----gatctattgctcttcagccactatAGTGTCATGCCAAGAC-TGGCCTAAAGTCGTCTCTTCTGCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30669193 172 + 171630274 GGTAAGTTGTTCaagaaaattaggtgcagaaa-attaagtaacttgcctagggtaacacaattatgaagatttgaggccagaattcagttccaggcaattttgttcta-----aatctgttgctcttcagccactgtAGTGTCATGCCAAGAC-TGGCCTAAAGTGGCGTCTTCTGCTC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1093405 178 -   1771730 GGTAAGTTGTTCaagaaaattaggtgcagaaaggttaagtaacttgcctagggtaacacaattatgaagatttgaggccagaattcagttccaggcagttttgttctaaatctaatctattgctcttcagccactgtAGTGTCATGCCAAGAC-AGGCCTAAAGTGGCATCTTCTGCTC
i cebCap1.NW_016107755v1   C 0 I 127
s aotNan1.NW_018496901v1     282123 178 -    486031 GGTAAGTTGTTCATgaaaattaggtgcagaaaggttaagtaacttgcctagagtaacacaattatgaagatttgaggccagaattcagttccaggcagttttgttcgaaatctgatctattgctcttcagccactgtAGTGTCATGCCAAGAC-TGGCCTAAAGTGGCGTCTTCGGCTC
i aotNan1.NW_018496901v1   C 0 I 125
s proCoq1.NW_012149775v1     532713 173 -   1411461 AGTAACTTGTTCaggaaaattagtttcggagaggttaagtaacttgcccaaggtaacacaattatgaagattcaaggccataattcagttctaggaagttttattcta-----gatctattgctcttaggccaccatattatTGTACCAAGAC-TAGCCTGAAGCTTCCTGCTCTGTCC
i proCoq1.NW_012149775v1   C 0 C 0
e otoGar3.GL873550           525672   0 +  18854210 C

a score=212643.000000
s hg38.chr6_GL000254v2_alt  1722338 23 +   4827813 AAACAGGTCCTTCTATGGCAATG
s panTro5.chr6             30603182 23 + 175400573 GGACAGGTCCTTCTATGGCAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31027213 23 + 173848474 GGACAGGTCCTTCTATGGCAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535770 23 +   2037526 AGACAGGTCCTTCTATGGCAATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75187805 23 + 122973662 AAACAGGCCCTTCTATGGCAATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31093714 23 + 172585720 AAACAGGCCCTTCTATGGTAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30385776 23 - 170955103 AAACAGGCCCTTCTATGGTAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     640406 23 +   1495729 AAACAGGCCCTTCTATGGTAATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     740986 23 -    863181 AAACAGGCCCTTCTATGGTAATG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29877019 23 -  71996105 AAACAGGCCCTTCTATGGTCATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     650954 23 -    735854 AAACAGGCCCTTCTATGGTAATG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1    1299104 23 +   1829203 AAACAGATCCTTCTATGGTAATG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30669365 23 + 171630274 AAACAGGCCCTTCTGTGACAATG
i calJac3.chr4             C 0 I 132
s cebCap1.NW_016107755v1    1093710 23 -   1771730 AAACAGGCCCTTCTATGACAATG
i cebCap1.NW_016107755v1   I 127 C 0
s aotNan1.NW_018496901v1     282426 23 -    486031 AAACAGGCCCTTCTATGACAACG
i aotNan1.NW_018496901v1   I 125 C 0
s proCoq1.NW_012149775v1     532886 23 -   1411461 AAACAGGTCCTTATATTGTAGCA
i proCoq1.NW_012149775v1   C 0 C 0
e otoGar3.GL873550           525672  0 +  18854210 C

a score=38958.000000
s hg38.chr6_GL000254v2_alt  1722361 4 +   4827813 ACCA
s panTro5.chr6             30603205 4 + 175400573 ACCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31027236 4 + 173848474 ACCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535793 4 +   2037526 ACCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75187828 4 + 122973662 ATCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31093737 4 + 172585720 ATCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30385799 4 - 170955103 ATCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     640429 4 +   1495729 ATCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     741009 4 -    863181 ATCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29877042 4 -  71996105 ATCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     650977 4 -    735854 ATCA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1    1299127 4 +   1829203 ATCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30669520 4 + 171630274 ATCA
i calJac3.chr4             I 132 C 0
s cebCap1.NW_016107755v1    1093733 4 -   1771730 ATCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     282449 4 -    486031 ATCA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     532909 4 -   1411461 ATCA
i proCoq1.NW_012149775v1   C 0 C 0
e otoGar3.GL873550           525672 0 +  18854210 C

a score=1419075.000000
s hg38.chr6_GL000254v2_alt  1722365 138 +   4827813 TGAAATACATGGCTAATAAA----GTATTAGGGGCAGGAAGAGGGGGAAGAAGAATGCAGTATTTGAGACTATGGTTACTGACTATATTTAAAATCACAGTTTCATGACTATTAAGGTTCTTTTTAAACTTTTCTCCCTGAT
s panTro5.chr6             30603209 138 + 175400573 TGAAATACATGGCTAATAAA----GTATTAGGGGCAGGAAGAGGGGGGAGAAGAATGCAGTATTTCAGACTATGGTTACTGACTATATTTAAAATCACAGTTTCATGACTATTAAGGTTCTTTTTAAACTTTTCTGCCTGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31027240 138 + 173848474 TGAAATACATGGCTAATAAA----GTATTAGGGGCAGGAAGAGGGGGGAGAAGAATGCAGTATTTCAGACTATGGTTACTGACTATATTTAAAATCACAGTTTCATGACTATTAAGGTTCTTTTTAAACTTTTCTGCCTGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535797 138 +   2037526 TGAAATACATGGCTAATAAA----GTATTAGGGGCAGGAAGAGGGGGGAGAAGAATGCAGTATTTGAGACTATGGTTACTGACTATATTTAAAATCACAGTTTCATGACTATTAAGGTTCTTTTTAAACTTTTCTCCCTGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75187832 138 + 122973662 TGAAATACGCGGCTAATAAA----GTATTAGGGGCAGGAAGAGGGGCGAGAAGAATGCAGTATTTGAGACCATGATTACTGACTATATTTAAAATCACAATTTCATGACTAGCAAGGTTCCTGTTAAACTTTTCTCCCTGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31093741 138 + 172585720 TGAAATACATGGCTAATAAA----GTATTAGGGGCAGGAAGAGGGGCGAGAAGAATGCAGTATTTGAGACTATGGTTACTGACCATATTTAAAATCACAATTTCATGACTATTAAGATTCCTCTTAAACTTTTCTCCCTCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30385803 138 - 170955103 TGAAATACATGGCTAATAAA----GTATTAGGGGCAGGAAGAGGGGCGAGAAGAATGCAGTATTTGAGACTATGGTTACTGACCATATTTAAAATCACAATTTCATGACTATTAAGATTCCTCTTAAACTTTTCTCCCTCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     640433 138 +   1495729 TGAAATACATGGCTAATAAA----GTATTAGGGGCAGGAAGAGGGGCGAGAAGAATGCAGTATTTGAGACTATGGTTACTGACCATATTTAAAATCACAATTTCATGACTATTAAGATTCCTCTTAAACTTTTCTCCCTCAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     741013 138 -    863181 TGAAATACATGGCTAATAAA----GTATTAGGGGCAGGAAGAGGGGCGAGAAGAATGCAGTATTTGAGACTATGGTTACTGACCATATTTAAAATCACAATTTCATGACTATTAAGGTTCCTCTTAAACTTTTCTCCCTCAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29877046 138 -  71996105 TGAAATACATGGCTAATAAA----GTATTAGGGGCAGGAAGAGGGGCGAGAAGAATGCAGTATTTGAGACTATGGTCACTGACCATATTTAAAATCACAATTTCATGACTATTAAGATTCCTCTTAAACTTTTCTCCCTCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     650981 138 -    735854 TGAAATACATGGCTAATAAA----GTATTAGGGGCAGGAAGAGGGGCGAGAAGAATGCAGTATTTGAGACTATGGTTACTGACCATATTTAAAATCACAATTTCATGACTATTAAGGTTCCTCTTAAACTTTTCTCCCTCAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1    1299131 138 +   1829203 TGAAATACATGGCTAATAAA----GTATTAGGGGCAGGAAGAGGGGCGAGAAGAATGCAGTATTTGAGACTATGGTTACTGACCATATTTAAAATCACAATTTCATGACTATTAAGGTTCCTCTTAAACTTTTCTCCTTCAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30669524 138 + 171630274 CGAAATACATGCCTAATAAA----GTATTGGGAGCAGGAAGAGGGGTGAAAAGAATGCAGTATTTGAGACTATGGTTACTAACTATATTTAAAATCACAATTTCATGACTATTAAGGTTCATGTTAAACTTTTTCCCCTGAT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1093737 142 -   1771730 CGAAACACATGCCTAATAAAGTATGTATTCGGAGCAGGAAGAGGGGTGAAAAGAATGCAGTATCTGAGACTGTGGTTACTGACTATATTTAAAATCACAATTTCATGACTATTAAGGTTCATCTTAAACTTTTTCCTCTGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     282453 138 -    486031 CGAAATACATGCCTAATAAA----GTATTAGGATCAGGAAGAGGGGTGAAGAGAATGCAGCATTTGAGACTATGGTTACTGACTATATTTAAAATCACAATTTCATGACTATTAAGGTTCATCTTAAACTTTTTCCCCTGAT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     532913 134 -   1411461 CGAAATACAGGGTTAATGGA----GTATTGGGCTAAGGGACAGGGGTGGAAAGAAAGCAGTATTTGAGACTATGATTACT----ATGTTTGCAATCACAATTTCATGATTATTAGGATTTATCTTACACTTTTCTCCCTGAT
i proCoq1.NW_012149775v1   C 0 I 88
s otoGar3.GL873550           525672 130 +  18854210 TGTAATACATGGCTAATGGA----GTATTGGACTAAGGGACTGCAGTGGAAAGAAGGCAGTATTTGAGACTATGATTGTG----ATGTTTAAAATCATAATTCCATGATTACTACAACTTATCTTAAACT----TCTCTGGT
i otoGar3.GL873550         C 0 C 0

a score=332726.000000
s hg38.chr6_GL000254v2_alt  1722503 41 +   4827813 GTATCATGGTATCCAGGTGAAAGAGGA-TCTGGCTCC----------------------------------------------CTACA
s panTro5.chr6             30603347 41 + 175400573 GTTTCATGGTATCCAGGTGAAAGAGGA-TCTGGCTCC----------------------------------------------CTACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31027378 41 + 173848474 GTTTCATGGTATCCAGGTGAAAGAGGA-TCTGGCTCC----------------------------------------------CTACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535935 41 +   2037526 GTCTCATGGTATCCAGGTGAAAGAGGA-TCTGGCTCC----------------------------------------------CTACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75187970 41 + 122973662 GTTTCGTGGTATCCAGGTGAAAGAGGA-TCTGGCTCC----------------------------------------------CTACG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31093879 41 + 172585720 GTTTCATGGTATCCAGGTGAAAGAAGA-TCTGGCTCT----------------------------------------------GTACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30385941 41 - 170955103 GTTTCATGGTATCCAGGTGAAAGAAGA-TCTGGCTCT----------------------------------------------CTACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     640571 41 +   1495729 GTTTCATGGTATCCAGGTGAAAGAAGA-TCTGGCTCT----------------------------------------------CTACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     741151 41 -    863181 GTTTCATGGTATCCAGGTGAAAGAAGA-GCTGGCTCT----------------------------------------------CTACA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29877184 41 -  71996105 GTTTCAGGGTATCCAGGTGAAAGAAGA-TCTGGCTCT----------------------------------------------CTACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     651119 41 -    735854 GTTTCATGGTATCCAGGTGAAAGAAGA-GCTGGCTCT----------------------------------------------CTACA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1    1299269 41 +   1829203 GTTTCATGGTATCCAGGTGAAAGAAGA-TCTGGCTCT----------------------------------------------CTACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30669662 42 + 171630274 GTTTCATGGTATCTAGGTGAAAGAAGATTCTTGCTCC----------------------------------------------CTGCA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1093879 42 -   1771730 GTTTCATGGTGTCTAGGTCCAAGAAGACTCTTGCTCC----------------------------------------------CTACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     282591 42 -    486031 GTTTCATGGTTTCTAAGTGAAAGAAGACGCTTGTTCC----------------------------------------------CTACA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           525802 88 +  18854210 ATTTCATTATATCCAGTTGAGAGAGGACGCTAGTTCCGCATGTCCCAGGATATGTAGATCTGTCCATGGTCCTAAAAGAATATCCACA
i otoGar3.GL873550         C 0 C 0
e proCoq1.NW_012149775v1     533047 88 -   1411461 I

a score=1005791.000000
s hg38.chr6_GL000254v2_alt  1722544 91 +   4827813 TCCCAGGACGTGTAGAACTGTCCATGGTTCTG-AAAGACAAACTAGCAGGTCCCACCACCTTTACAAATGGCAATCTTACTGTGGAAAACTG
s panTro5.chr6             30603388 91 + 175400573 TCCCAGGACATGTAGAACTGTCCATGGTTCTG-AAAGACAAACTAACAGGTCCCACCACCTTTACAAATGGCACTCTTACTGTGGAAAACTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31027419 91 + 173848474 TCCCAGGACATGTAGAACTGTCCATGGTTCTG-AAAGACAAACTAGCAGATCCCACCACCTTTACAAATGGCACTCTTACTGTGGAAAACTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     535976 91 +   2037526 TCCCAGGACGTGTAGAACTGTCCATGGTTCTG-AAAGACAAACTAGCAGGTCCCACCACCTTCACAAATGGCACTCTTACTGTGGAAAACTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75188011 91 + 122973662 TCCCAGGACGTGTAGAACTGTCCATGGTTCTG-AAAGACAAACGAGCAGGTCCCACCACCTTCATAAATGGCATTCTTACTGTGGAAAACTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31093920 91 + 172585720 TCCCAGGACGTGTAGAACTGTCCATGGTTCTG-AAAGACAAACTAGCAGGTTCCACCACCTTCACAAATGGCATTCTTACTGTGGAAAACTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30385982 91 - 170955103 TCCCAGGACGTGTAGAACTGTCCATGGTTCTG-AAAGACAAACTAGCAGGTTCCACCACCTTCACAAATGGCATTCTTACTGTGGAAAACTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     640612 91 +   1495729 TCCCAGGACGTGTAGAACTGTCCATGGTTCTG-AAAGACAAACTAGCAGGTTCCACCACCTTCACAAATGGCATTCTTACTGTGGAAAACTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     741192 91 -    863181 TCCCAGGACATGTAGAACTGTCCATGGTTCTG-AAAGACAAACTAGCAGGTTCCACCACCTTCACAAATGGCATTCTTACTGTGGAAAACTG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29877225 91 -  71996105 TCCCAGGACGTGTGGAACTGTCCATGGTTCTG-AAAGACAAACAGGCAGGTTCCACCACCTTCACAAATGGCATTCTTACTGTGGAAAACTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     651160 91 -    735854 TCCCAGGACATGTAGAACTGTCCATGGTTCTG-AAAGACAAACTAGCAGGTTCCACCACCTTCACAAATGGCATTCTTACTGTGGAAAACTG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1    1299310 91 +   1829203 TCGCAGGACATGTAGAACTGTCCATGGTTCTG-AAAGACAAACTAGCAGGTTCCACCACCTTCACAAATGGCATTCTTACTGTGGAAAACTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30669704 92 + 171630274 TACCAGGACGTGTGGAACTGTCCGTGGTTCTGAAAAAAAAAACTGGCAGGTCCTACCACTTTCATAAATAACATTCTTATTGTGGAAAACTG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1093921 91 -   1771730 TCCCAGGACGTGCGGAACTGTCCATGGTTCTG-AAAGACAAATTGGCAGGTCCCACCACTTTCATAAACGACATTCTTATTGTGGAAAACTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     282633 91 -    486031 TCCCAGGACGTGTGGAACTGTCCATGGTTCTG-AAAGACAAACTGGTAGGTCCCACCGCTTTCATAAATGACACTCTTATTGTGGAAAACTG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     533135 91 -   1411461 TCCCAGGATGTATAGATCTGTCCATGGTACTG-AAAGACAAACTGGCAAGTCCTACCGACTTCATAAATGCCATTCTTATTGTGGAAAACTG
i proCoq1.NW_012149775v1   I 88 I 86
s otoGar3.GL873550           525890 91 +  18854210 TCCCAGAATGTATAGATCTATCCGTGGTTCTG-AAAGACAAACCAGCTAATCCCACCAGCCTCATAAATGCCATTCCTACTGTGGAAAACTG
i otoGar3.GL873550         C 0 I 2

a score=621238.000000
s hg38.chr6_GL000254v2_alt  1722635 61 +   4827813 CACTAGTGAAAACTCTACATATGACTTTGTACATGCATCACTTACAAGGATTCAGCAATCC
s panTro5.chr6             30603479 61 + 175400573 CACTAGTGAAAACTCTACATATGACTTTGTACATGCATCATTTACAAGGATTCAGCAATGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31027510 61 + 173848474 CACTAGTGAAAACTCTACATATGACTTTGTACACGCATCACTTACAAGGATTCAGCAATCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     536067 61 +   2037526 CACTAGTGAAAACTCTACATATGACTTTGTACATGCATCACTTACAAGGATTCAGCAATCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75188102 60 + 122973662 CACTAGTGAAAACTCTACATATGACTTTGTACATGCATCACTTA-AAGGATTCAGCAATCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31094011 61 + 172585720 CACTAGTGAAAAGTCTACATATGACTTTGTACATGCATCACTTACAAGGATTCAGCAATCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30386073 61 - 170955103 CACTAGTGAAAAGTCTACATATGACTTTGTACATGCATCACTTACAAGGATTCAGCAATCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     640703 61 +   1495729 CACTAGTGAAAAGTCTACATATGACTTTGTACATGCATCACTTACAAGGATTCAGCAATCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     741283 61 -    863181 CACTAGTGAAAACTCTACATATGACTTTGTACATGCATCACTTACAAGGATTCAGCAATCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29877316 61 -  71996105 CACTGGTGAAAACTCTACATATGACTTTGTACGTGCATCACTTACAAGGATTCAGCAACCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     651251 61 -    735854 CACTAGTGAAAACTCTACATATGACTTTGTACATGCATCACTTACAAGGATTCAGCAATCT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1    1299401 61 +   1829203 CACTAGTGAAAACCCTACATATGACTTTGTACATGCATCACTTACAAGGATTCAGCAATCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30669796 61 + 171630274 CACTAGTGAAAACTCTACATATGACTTTGTATATGCATCACTTACCAGGATTCAGCAATCC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1094012 61 -   1771730 CACTAGTGAAAACTCTACATATGACTTTGTACATGCATCACTTACAAGGATTCAGCAATCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     282724 61 -    486031 CACTAGTGAAAACTCTACATATGACTTTGTACATGCATCACTTACAAGGATTCAGCAATCC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           525983 60 +  18854210 CACTAGTGAAAACTGTACATTTGAATTTGCACATTCATTACTTACAA-GATTAGGCAATCT
i otoGar3.GL873550         I 2 C 0
e proCoq1.NW_012149775v1     533226 86 -   1411461 I

a score=12376.000000
s hg38.chr6_GL000254v2_alt  1722696 1 +   4827813 T
s panTro5.chr6             30603540 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31027571 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     536128 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75188162 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31094072 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30386134 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     640764 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     741344 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29877377 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     651312 1 -    735854 T
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1    1299462 1 +   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30669857 1 + 171630274 T
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1094073 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     282785 1 -    486031 T
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     533312 1 -   1411461 T
i proCoq1.NW_012149775v1   I 86 C 0
s otoGar3.GL873550           526043 1 +  18854210 T
i otoGar3.GL873550         C 0 I 317

a score=32955.000000
s hg38.chr6_GL000254v2_alt  1722697 3 +   4827813 TGG
s panTro5.chr6             30603541 3 + 175400573 TGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31027572 3 + 173848474 TGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     536129 3 +   2037526 TGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75188163 3 + 122973662 TGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31094073 3 + 172585720 TGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30386135 3 - 170955103 TGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     640765 3 +   1495729 TGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     741345 3 -    863181 TGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29877378 3 -  71996105 TGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     651313 3 -    735854 TGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1    1299463 3 +   1829203 TGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30669858 3 + 171630274 TGG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1094074 3 -   1771730 TGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     282786 3 -    486031 TGG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     533313 3 -   1411461 TGA
i proCoq1.NW_012149775v1   C 0 C 0
e otoGar3.GL873550           526044 317 +  18854210 I

a score=1063238.000000
s hg38.chr6_GL000254v2_alt  1722700 115 +   4827813 AAAGATGACATAGAAAGACCCACAGAATATTCCCTTTATATGCCCTATACTAAAATGTACAAAGCAAAATC-AAATTAGACAACACTATGATTTAGAAGTTTATCTTGAAATTTTA
s panTro5.chr6             30603544 115 + 175400573 AAAGATGCCATAGAAAGACCCACAGAATATTCCCTTTATATGCCCTATACTAAAATGTACAAAGCAAAATC-AAATTAGACAACACTATGATTTAGAAGTTTATCTTGAAATTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31027575 115 + 173848474 AAAGATGCCATAGAAAGACCCACAGAATATTCCCTTTATATGCCCTATACTAAAATGTACAAAGCAAAATC-AAATTAGACAACACTATGATTTAGAAGTTTATCTTGAAATTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     536132 115 +   2037526 AAAGATGACATAGAAAGACCCACAGAATATTCCCTTTATATGCCCTATACTAAAATGTACAAAGCAAAATC-AAATTAGACAACACTATGATTTAGAAGTTTATCTTGAAATTTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75188166 112 + 122973662 AAAGATGACACAGAACGGCCCACAGAATATTCCCTTTATATGCCCTACACTAAAATGTACAAAGCAAAATC-AAATTAG---ACATTATGATTTAGAAGTTTATCTTGAAATTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31094076 115 + 172585720 AAAGATGACACAGAAAGACCCACAGAATATTCTCTTTATATGCCGTATACTAAAATATGCAAAACAAAATC-AAATTAGACGACACTATAAGTTAGAAGTTTATCTTGAAATTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30386138 115 - 170955103 AAAGATGACACAGAAAGACCCACAGAATATTCTCTTTATATGCCGTATACTAAAATATGCAAAACAAAATC-AAATTAGACGACACTATAAGTTAGAAGTTTATCTTGAAATTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     640768 115 +   1495729 AAAGATGACACAGAAAGACCCACAGAATATTCTCTTTATATGACGTATACTAAAATATGCAAAACAAAATC-AAATTAGACGACACTATAAGTTAGAAGTTTATCTTGAAATTTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     741348 115 -    863181 AAAGATGACACAGAAAGACCCACAGAATATTCCCTTTATATGCCCTATACTAAAATATGCAAAACAAAATC-AAATTAGATGACACAATGAGTTACAAGTTTATCTTGAAATTTTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29877381 115 -  71996105 AAAGATGACACAGAAAGACCCACAGAATATTCCCTTTATATGCCCTATACTAAAATGTGCAAAACAAAATC-AAATTAGACGACACTATGAGTTAGAAGTTTATCTTGAAATTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     651316 115 -    735854 AAAGATGACACAGAAAGACCCACAGAATATTCCCTTTATATGCCCTATACTAAAATATGCAAAACAAAATC-AAATTAGATGACACAATGAGTTACAAGTTTATCTTGAAATTTTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1    1299466 115 +   1829203 AAAGATTACACAGAAAGACCCACAGAATATTCCCTTTATATGCCCTATACTAAAATATGCAAAACAAAATC-AAATTAGATGACACAATGAGTTACAAGCTTATCTTGAAATTTTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30669861  98 + 171630274 AAGGATGATGTAGA----CCCACAAAATATTCCCTTTATATGCCATATACTAAAAT-TACAAAGCAAAATC-CAATTAGACCACATTACGAGCTGGAAGT------------TTTA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1094077 110 -   1771730 AAGGATGATGCAGA----CCCACAAAATATTCCCTTTATATGCCCTATATTAAAAT-TACAAAACAAAATC-CAATTAGGCCACATTATGAGCTAGAAGTTTATCCTGAAAATTTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     282789 110 -    486031 AAGGATGATGTAGA----CCCACAGAATATTCCCTTTATATGCCCTATACTAAAAT-TACAAAACAAAATC-CAATTAGACCACATTATGAGCTAGAAGTTTATCCTGAAATTTTA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     533316 113 -   1411461 AAAGGTAACATAGAAAGACCCACAGAATATGCTCTTTATATCCCCTATACTGAAATGTACAAAAC--CACC-AACATAGATCACAATATGTGTCAGAAGTTTATCTTGAAGTTTTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           526361 114 +  18854210 aaaaGTGTCATAGAAAGACTCACAGAATATTCTCTTTATAGCCTCTCTACTGAAATATACAACAC--TACCAAATATAGACCACAATATGAGTAAGAAGTTTACCTTAAAATTTTA
i otoGar3.GL873550         I 317 I 77729

a score=1460154.000000
s hg38.chr6_GL000254v2_alt  1722815 154 +   4827813 GATCAGAATGTAAAGAAAAGAAATCCAGCATTATTGTATGGACAAGAGAGAATGGATATAGATTTTAACTAACT--ATATATTCCCTCAAAACTC------ATATGCTGTCCTTTTTAACCTCACCttaatttaaatttaaccacacatttactttcatttt
s panTro5.chr6             30603659 154 + 175400573 GATCAGAATGTAAAGAAAAGAAATCCAGCATTATTGTATGGACAAGAGAGAATGGATATAGATTATAACTAACT--ATATATTCCCTCAAAACTC------ATATGCTGTCCTTTTTAACCTCACCttaatttaaatttaaccacacatttactttcatttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31027690 154 + 173848474 GATCAGAATGTAAAGAAAAGAAATCCAGCATTATTGTATGGACAAGAGAGAATGGATATAGATTATAACTAACT--ATATATTCCCTCAAAACTC------ATATGCTGTCCTTTTTAACCTCACCttaatttaaatttaaccacacatttactttcatttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     536247 154 +   2037526 GATCAGAATGTAAAGAAAAGAAATCCAGCATTATTGTATGGACAAGAGAGAATGGATATAGATTTTAACTAACT--ATATATTCCCTCAAAACTC------ATATGCTGTCCTTTTTAACCTCACCttaatttaaatttaaccacacatttactttcatttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75188278 154 + 122973662 GATCAGAATCTAAAGAAAAGAAATCCAGCATTATTGTATGGACAAGAGAGAATGAATATAGATTTTAACTAACT--ATATATTCCTTCAAAACTC------ATATGCTATCCTTTTTAACCTCACCTTAAtttaaatttaaccacatatttactttcatttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31094191 154 + 172585720 GATCAGAATGTAAAGAAAAGAAATCCAGCATTATTCTATGGACAAGAGAGAATGGATATAGATTTTAACTAACT--ATATATTCCCTCAAAACAC------ATATGCTATCCTTTTTAACCTCACCTTAATTTAAATTTAACCACACATTTACTTTCATTtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30386253 154 - 170955103 GATCAGAATGTAAAGAAAAGAAATCCAGCATTATTCTATGGACAAGAGAGAATGGATATAGATTTTAACTAACT--ATATATTCCCTCAAAACAC------ATATGCTATCCTTTTTAACCTCACCTTAATTTAAATTTAACCACACATTTACTTTCATttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     640883 154 +   1495729 GATCAGAATGTAAAGAAAAGAAATCCAGCATTATTCTATGGACAAGAGAGAATGGATATAGATTTTAACTAACT--ATATATTCCCTCAAAACAC------ATATGCTATCCTTTTTAACCTCACCTTAATTTAAATTTAACCACACATTTACTTTCATTtt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     741463 148 -    863181 GATCAGAATGTAAAGAAAAGAAATCCAGCATTATTCTATGGACAAGAGAGAATGGATATAGATTTTAACTAACT--ATATATTCCCTCAAAACAC------ATATGCTATCCTTTTTAACCTCACCTT------AATTTAACCACACAtttactttcatttt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29877496 154 -  71996105 GATCAGAATGTAAAGAAAAGAAATCCAGCATTATTCTATGGACAAGAGAGAATGGATatagattttaactaact--atatattccctcaaaacac------atatgctatcctttttaacctcaccttaatttaaatttaaccacacatttactttcatttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     651431 148 -    735854 GATCAGAATGTAAAGAAAAGAAATCCAGCATTATTCTATGGACAAGAGAGAATGGATATAGATTTTAACTAACT--ATATATTCCCTCAAAACAC------ATATGCTATCCTTTTTAACCTCACCTT------AATTTAACCACACAtttactttcatttt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1    1299581 154 +   1829203 GATCAGAATGTAAAGAAAAGAAATCCAGCATTATTGTATGGACAAGAGAGAATGGATATAGATTTTAACTAACT--ATATATTCCCTCAAAACAC------ATATGCTATCCTTTTTAACCTCACCTTAAtttaaatttaaccacatgtttactttcatttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30669959 153 + 171630274 GATCAGAATG-AAAGAAAAGAAATCCAGCATTATGGTATGGACAAGAGAGAATGAAGATATATTTCAACTAACT--ATATATCCCCTCAAAACTC------ATATGCTATCCTTTTTAACCTCACCTTAACTTAAATTTAACAATGCatttactttcatttt
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1094187 148 -   1771730 GATCAGAATGCAAAGAAAAGAAATCCAGCATTATGGTATGGACAAGAGAGAATAAAGATATATTTCAGCTAACT--ATATATCCCCTCAAA------------ATGCTATCCTTTTTAACCTCACCTTAATTTAAATTTAACAAAGCATTTACtttcatttt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     282899 152 -    486031 GATCAGAATGCAAAGAAAAGAAATCCAGCATTATAGTATGGACAAGAGAGAATAAAGATATATTTCAACTAACT--ATATATCCCCTCAGA--AC------ATATGCTATCCTTTTTAACCTCACCTTAATTTAAATTTAACAGCGCAtttactgtcatttt
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     533429 162 -   1411461 AATCAGATGATAAAGAAAATAAATCCAGAATTATTTTGGGGAAAAGAGACAAATAATCTAGATTTCAATTAACTGGATTTATTCCCTCAGAATGTATATTAATATGTTATCTTTTTTAACCTTACCTTAATTTAAATTTAACCACACATTTACTTTCATTTT
i proCoq1.NW_012149775v1   C 0 I 5408
e otoGar3.GL873550           526475 77729 +  18854210 I

a score=3425097.000000
s hg38.chr6_GL000254v2_alt  1722969 404 +   4827813 tgatt----tttattttgtatttatgttttcttttatcttgtatcttccaaccaggatttcgccttttgcctgaagcatattctttagaactcccttcagtaaaagcgtgtttgtgtcaaattgtctttgcttggaaaaaatccattgagacttgatttttATATTATCATGTATTTCATTTCTAAATGTTTTATATTTGTCTTTTCAATTTTTCCTGAACATTATTTGTAGTTTCTGATTAACTGGAAGTCTTTTAAAGCCTGTTTTTTAATCACAGGAAGCAGGGCTATTTTATGTCTTATTCTTATTATTCTGCTGTATGGTGTTTCTGCTTGATCTTTCATGGTGACTTGTATCTTGTAAATAGTTTTGTTGTTGTTTTCCTGGTAAGTGCTCATTttgcttat
s panTro5.chr6             30603813 404 + 175400573 tgatt----tttattttgtatttatgttttcttttatcttgtatcttccaaccaggacttcgccttttgcctgaagcatattctttagaactcccttcagtaaaagcgtgtttgtgtcaaattgtctttgcttggaaaaaatccattgagacttgatttttatattatcatgtatttcatttctaaatgttgtatatttgtcttttcaatttttcctgaacattatttgtagtttctgattaactggaagtcttttaaagcctgttttttaatcacagtaagcagggctattttatgtcttattcttattattctgctgtatggtgtttctgcttgatctttcatggtgacttgtatcttgtaaacagttttgttgttgttttcctggtaagtgctcattttgcttat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31027844 404 + 173848474 tgatt----tttattttgtatttatgttttcttttatcttgtatcttccaaccaggacttcgccttttgcctgaagcatattctttagaactcccttcagtaaaagcgtgtttgtgtcaaattgtctttgcttggaaaaaatccattgagacttgatttttATATTATCATGTATTTCATTTCTAAATGTTGTATATTTGTCTTTTCAATTTTTCCTGAACATTATTTGTAGTTTCTGATTAACTGGAAGTCTTTTAAAGCCTGTTTTTTAATCACAGTAAGCAGGGCTATTTTATGTCTTATTCTTATTATTCTGCTGTGTGGTGTTTCTGCTTGATCTTTCATGGTGACTTGTATCTTGTAAACAGTTTTGTTGTTGTTTTCCTGGTAAGTGCTCATTttgcttat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     536401 404 +   2037526 tgatt----tttattttgtatttatgttttcttttatcttgtatcttccaaccaggacttcgccttttgcctgaagcatattctttagaactcccttcagtaaaagcgtgtttgtgtcaaattgtctttgcttggaaaaaatccattgagacttgatttttatattatcatatatttcatttctaaatgttgtatatttgtcttttcaatttttcctgaacattatttgtagtttctgattaactggaagtcttttaaagcctgttttttaatcacagtaagcagggctattttatatcttattcttattattctgctgtatggtgtttctgcttgatctttcatggtgacttgtatcttgtaaacagttttgttgttattttcctggtaagtgctcattttgcttat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75188432 408 + 122973662 tgttttttgtttattttgtatttatgttttcttttatcttatatcttccaaccaggatttcgccttttgcctgaagcatattctttagaactcccttcaggaaaagcgtgtttgtgtcaaattgtctttgtttggaaaaAatccattgagacttgatttttatattattatatatttcatttctaaatgttgtatatttgtcttttcaaattttcctgaacattatttgtagtttctgattaactggaagtcttttaaagtctgttttttaatcacagtaagcagggctattttatatcctattcttattattctgctgtatggtgtctctgcttgatctttcatggtgacttgtatcttgtgagcagttttgttgttgttttcctggtaagtgctcattttgcttat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31094345 403 + 172585720 tgttttttgtttgttttgtatttatgttttattttatcttgtatcttCCAACCAAGATTTCCccttttgcctgaagcatattctttagaactcccttcagtaaaggcgtgtttgtgccaaattgtct----TTGGAAAAAatccattgagacttgatttttatattattatat-tttcatttctaaatgttgtatatttgtcttttcaaattttcctgaccattatttgtagtttctgatcaactgaaagtcttttaaatcctgttttttaatcacagtaagcagagctattttatatcttattcttattattctgctgtatggtgtttctgcttggtctttcatggtgacttgtatcttgtgaacagttttgttgttgttttcgtagtaagtgctcattttgcttat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30386407 403 - 170955103 tgttttttgtttgttttgtatttatgttttattttatcttgtATCTTCCAACCAAGATTTCCccttttgcctgaagcatattctttagaactcccttcagtaaaggcgtgtttgtgccaaattgtct----TTGGAAAAAatccattgagacttgatttttatattattatat-tttcatttctaaatgttgtatatttgtcttttcaaattttcctgaacattatttgtagtttctgatcaactgaaagtcttttaaatcctgttttttaatcacagtaagcagagctattttatatcttattcttattattctgctgtatggtgtttctgcttggtctttcatggtgacttgtatcttgtgaacagttttgttgttgttttcgtagtaagtgctcattttgcttat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     641037 403 +   1495729 tgttttttgtttgttttgtatttatgttttattttatcttgtatcttCCAACCAAGATTTCCccttttgcctgaagcatattctttagaactcccttcagtaaaggcgtgtttgtgccaaattgtct----TTGGAAAAAatccattgagacttgatttttatattattatat-tttcatttctaaatgttgtatatttgtcttttcaaattttcctgaacattatttgtagtttctgatcaactgaaagtcttttaaatcctgttttttaatcacagtaagcagagctattttatatcttattcttattattctgctgtatggtgtttctgcttggtctttcatggtgacttgtatcttgtgaacagttttgttgttgttttcgtagtaagtgctcattttgcttat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     741611 403 -    863181 tgttttttgtttgttttgtatttatattttcttttatcttgtatcttCCAACCAAGATTTCCccttttgcctgaaacatattctttagaactcccttcagtaaaggcgtgttcgtgccaaattgtct----TTGGAAAAAatccattgagacttgatttttatattattatat-tttcatttctaaatgttgtatatttgtcttttcaaattttcctgaacattatttgtagtttctgattaactgaaagtcttttaaatcctgttttttaatctcagtaagcagagctattttatatcttattcttattattctgctgtacggtgtttctgcttggtctttcatggtgacttgtatcttgtgaacagttttgttgttgttttcctagtaagtgctcattttgcttat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29877650 403 -  71996105 tgttttttatttgttttgtatttatattttcttttatcttgtatcttccaaccaagatttccccttttgcctgaagcatattctttagaactctcttcagtaaaggcgtgtttgtgccaaattgtct----TTGGAAAAAatccactgagacttgatttttatattattatat-tttcatttctaaatgttgtatatttgtcttttcaaattttcctgaacattatttgtagtttctgattaactgaaagtcttttaaatcatgttttttaatcacagtaagcagagctattttatatcttactcttattattctgctgtatagtgtttctgcttagtctttcatagtgacttgtatcttgtgaacagttttgttgttgttttcgtagtaagtgctcattttgcttat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     651579 388 -    735854 tgttttttgtttgttttgtatttatattttcttttatcttgtatcttCCAACCAAGATTTCCccttttgcctgaaacatattctttagaactcccttcagtaaaggcgtgtttgtgccaaattgtct----TTGGAAAAAATCCATTGAGACTTGATTTTTATATTATTATAT-TTTCATTTCTAAATGTTGTATATTTGTCTTTTCAAATTTTCCTGAACATTATTTGTAGTTTCTGATTAACTGAAAGTCTTTTAAAT---------------CAGTAAGCAGAGCTATTTTATATCTTATTCTTATTattctgctgtacggtgtttctgcttggtctttcatggtgacttgtatcttgtgaacagttttgttgttgttttcctagtaagtgctcattttgcttat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1    1299735 403 +   1829203 tgttttttgtttgttttgtatttatgttttcttttatcttgtatcttccaaccaagatttccctttttgcctgaagcatattctttagaactcccttcagtaaaggcgtgtttgtgccaaattgtct----TTGGAAAAAATCCATTGAGACTTGATTTTTATATTATTATAT-TTTCATTTCTAAATGTTGTATATTTGTCTTTTCAAATTTTCCTGAACATTATTTGTAGTTTCTGATTAACTGAAAGTCTTTTAAATCCTGTTTTTTAATCACAATAAGCAGAGCTATTTTATATCTTATTCTTATTATTCTGCTGTATGGTGTTTCTGCTTGGTCTTTCATGGTGACTTGTATCTTGTGAACAGTCTTGTTGTTGTTTTCCTAGTAAGTGCTCATTTTGCTTAT
i colAng1.NW_012115577v1   C 0 N 0
s calJac3.chr4             30670112 407 + 171630274 tgtcttttgtttattttatatttttgttttctcttatcttatatcttccaaccaggatttccccttttgcctgaagtgtattcttcaggactccccttagtaaaggtgtgtttgtgtcaaattgtctttgttGGGAAAAAatccattgagacttgatttttatattactatat-tttcatttctaaatgttgtgtatttgtcttttccaattttcctgaacattatttacagtttctgattaactgaaagtcctttaaagcctattattaaatcacagtaggcagggctattttgtatactattcttcctcgtctgctgtttggtgtttctgcttgatctttcatggtgacttgtatcttcttaaccgttttgttgttgtttccctgttaagtgctcactttgtttat
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1094335 394 -   1771730 tgtcttttgtttattttatgtttttgttttcttttATCTTATATcttccaaccaggatttccccttttgcctgaagcatattcttcaggactccccttagtaaaggtgtgtttgtgtcaaattgtctatgtttggaaaaaatccattgagacttgatttttATATTATTATAT-TTTCATTTCTAAATGTTGTGTATTTGTCTTTTCAAATTTTCCTGAACATTATTTACAGTTTCTGATTAACTGAAAGTCCTTTAAAACCTGTTTTTAAATCACAGCAGGCGGTGCTATTTTATATACTATTCTTCCTATTCTGCTGTTTGGTG-------------TTTCATGGTGACTTGTGTCTTCTTAACTGTTTTGTTGTTGTTTCCCTGTTAAGTGCTCACTTTGCTTAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     283051 407 -    486031 tgtcttttgtttattttatatttttgttttcttttatcttatatcttccaaccaggatttccccttttgcctgaagcatattcttcaggactccccttagtaaaggtgtgtttgtgtcaaattgtctttgtttggaaaaaatccattgagacttgatttttATATTATTGTAT-TTTCATTTCTAAATGTTGTGTATTTGTCTTTTCAAATTTTCCTGAACACTATTTACAGTTTCTGATTAACTGAAAGTCCTTTAAAGCCTGTTTTTAAATCACAGTAGGTAGGGCTATTTTATATACTATTCTTCCTATTCTTCTGTTTGGTGTTTCTGCTTGATCTTTCATGGTGAGTTGTATCTTCTGAACCATTTTGTTGTTGTTTCCCTGGTAAGTGCCTactttgcttat
i aotNan1.NW_018496901v1   C 0 C 0
e proCoq1.NW_012149775v1     533591 5408 -   1411461 I
e otoGar3.GL873550           526475 77729 +  18854210 I

a score=161098.000000
s hg38.chr6_GL000254v2_alt  1723373 21 +   4827813 ggaataattttaggaaatttt
s panTro5.chr6             30604217 21 + 175400573 ggaataattttaggaaatttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31028248 21 + 173848474 ggaataattttaggaaatttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     536805 21 +   2037526 ggaataattttaggaaatttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75188840 21 + 122973662 ggaataattttagaaaatgtt
i nomLeu3.chr1a            C 0 I 2
s rheMac8.chr4             31094748 21 + 172585720 ggaataattttaggaaatttt
i rheMac8.chr4             C 0 I 2
s macFas5.chr4             30386810 21 - 170955103 ggaataattttaggaaatttt
i macFas5.chr4             C 0 I 2
s macNem1.NW_012012100v1     641440 21 +   1495729 ggaataattttaggaaatttt
i macNem1.NW_012012100v1   C 0 I 2
s cerAty1.NW_012002535v1     742014 21 -    863181 ggaataattttagggaatttt
i cerAty1.NW_012002535v1   C 0 I 2
s chlSab2.chr17            29878053 21 -  71996105 ggaataattttaggaaatttt
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012107142v1     651967 21 -    735854 ggaataattttagggaatttt
i manLeu1.NW_012107142v1   C 0 I 2
s calJac3.chr4             30670519 21 + 171630274 ggaataattttatgaaatttt
i calJac3.chr4             C 0 I 2
s cebCap1.NW_016107755v1    1094729 21 -   1771730 GAAATAATTTTATGAAATTTT
i cebCap1.NW_016107755v1   C 0 I 137
s aotNan1.NW_018496901v1     283458 21 -    486031 ggaataattttatgaaatttt
i aotNan1.NW_018496901v1   C 0 I 2
e proCoq1.NW_012149775v1     533591 5408 -   1411461 I
e otoGar3.GL873550           526475 77729 +  18854210 I

a score=815665.000000
s hg38.chr6_GL000254v2_alt  1723394 113 +   4827813 aagtgtggttgatgacatcttcctccagagaggatttgtgtttgtttTGCGTGTTATTTGCGTTTGTTTTTTGACAGGTTCCTTGGAGCCTGGCCCACTATAAACTGAATTCA
s panTro5.chr6             30604238 113 + 175400573 aagtgtggttgatgacatcttcctccagagaggatttgtgtttgttttgcatgttatttgcgtttgttttttgacaggttccttggagcctggcccactataaactgaattca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31028269 112 + 173848474 aagtgtggttgatgacatcttcctccagagaggatttGTGTTT-TTTTGCATGTTATTTGCGTTTGTTTTTTAACAGGTTCCTTGGAGCCTGGCCCACTATAAACTGAATTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     536826 113 +   2037526 aagtgtggttgatgacatcttcctccagagaggatttgtgtttgttttgcgtgttatttgcgtttgttttttgacaggttccttggagcctgacccactataaactgaattca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75188863 113 + 122973662 aagtgtggatgatggcatgttcctccagagaggatttgtgtttgttttgcgtgttatttgcgtttgttttttgacgggttccttggagcctggcccactacaaactgaattca
i nomLeu3.chr1a            I 2 C 0
s rheMac8.chr4             31094771 113 + 172585720 aagtgtggatgatggcatcttcctccagagagggtttgtgtttgtttcgtgtattattcgcatttgttttctgacaggttccttggagcctggcccactataaactgaattca
i rheMac8.chr4             I 2 C 0
s macFas5.chr4             30386833 113 - 170955103 aagtgtggatgatggcatcttcctccagagagggtttatgtttgtttcgcgtattattcgcatttgttttctgacaggttccttggagcctggcccactataaactgaattca
i macFas5.chr4             I 2 C 0
s macNem1.NW_012012100v1     641463 113 +   1495729 aagtgtggatgatggcatcttcctccagagagggtttgtgtttgtttcgcgtattattcgcatttgttttctgacaggttccttggagcctggcccactataaactgaattca
i macNem1.NW_012012100v1   I 2 C 0
s cerAty1.NW_012002535v1     742037 113 -    863181 aagtgtggatgatggtgtcttcctccagagagggtttgtgtttgtttcgcgtattatttgcatttgttttctgacaggttccttggagcctggcccactataaactgaattca
i cerAty1.NW_012002535v1   I 2 C 0
s chlSab2.chr17            29878076 113 -  71996105 aagtgtggattatgggatcttcctccagagagggtttgtgtttgtttcgcgtattatttgcatttgttttctgacaggttccttggagcctggcccactataaactgaattca
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012107142v1     651990 113 -    735854 aagtgtggatgatggtatcttcctccagagagggtttgtgtttgtttcgcgtattattcgcatttgttttctgacaggttccttggagcctggcccactataaactgaattca
i manLeu1.NW_012107142v1   I 2 C 0
s calJac3.chr4             30670542 109 + 171630274 aagtgtggatgatggcatcttcttccagagagcatttgtgtttgttttgtgtgtgatt----tttgtttttttacaggttccttggagtttggcccactagaaacagaattca
i calJac3.chr4             I 2 C 0
s cebCap1.NW_016107755v1    1094887 109 -   1771730 AAGTGTGGATGATGGCATCTTCTTCCAGAGAGCATTTGTGTTTGTTTTGTGTATGATT----TTTGGTTATTGGCAGGTTCCTTGGAGTCTGGCCCACTAGAAACAGAATTCA
i cebCap1.NW_016107755v1   I 137 C 0
s aotNan1.NW_018496901v1     283481 113 -    486031 aagtgtgaataatggcatcttcctccagagagcatttgtgtttgtttTGTGTGTGATTTTTGTTTGTTTTTTGACAGGTTCCTTGGAGCCTGGCCCACTAGAAACAGAATTTA
i aotNan1.NW_018496901v1   I 2 C 0
e proCoq1.NW_012149775v1     533591 5408 -   1411461 I
e otoGar3.GL873550           526475 77729 +  18854210 I

a score=1527926.000000
s hg38.chr6_GL000254v2_alt  1723507 195 +   4827813 CAACTTGATGA-TTGCCAGACAATCCAGGTAGTGAGAACTTGGGCTGCAAATAC----ATGTGTGGGGCCAT-T---------------------ATGTTTACTCCCAGTT-CCACTCAGCACCAAGGCAGCTGTTCCTGCAGTCCTTTGAGCATGGGGCATTTCT----CTTACACCGAGGAACTGAACTT----AGGGGTCCCAGCAAAATGGAGGAGATCATCCTAGG
s panTro5.chr6             30604351 195 + 175400573 caacttgatga-ttgccagacaatccaggtagtgagaacttgggctgcaaatac----atgtgtggggccat-t---------------------gtgtttacTCCCAGTT-CCACTCAGCACCAAGGCAGCTGTTCCTGCAGTCCTTTGAGCATGGGGCATTTCC----CTTACACCGAGGAACTGAACTT----AGGGGTCCCAGCAAAATGGAGGAGATCATCCTAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31028381 195 + 173848474 CAACTTGATGA-TTGCCAGACAATCCAGGTAGTGAGAACTTGGGCTGCAAATAC----ATGTGTGGGGCCAT-T---------------------GTGTTTACTCCCAGTT-CCACTCAGCACCAAGGCAGCTGTTCCTGCAGTCCTTTGAGCATGGGGCATTTCC----CTTACACCGAGGAACTGAACTT----AGGGGTCCCAGCAAAATGGAGGAGATCATCCTACG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     536939 195 +   2037526 caacttgatga-ttgccagacaatgcaggtagtgagaacttgggctgcaaatac----atgtgtggggccat-t---------------------gtgtttacTCCCAGTT-CCACTCAGCACCAAGGCAGCTGTTCCTGCAGTCCTTTGAGCATGGGGCATTTCC----CTTACACCAAGGAACTGACCTT----AGGGGTCCCAGCAAAATGGATGAGATCATCCTAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75188976 195 + 122973662 caacttgatga-ttgtcagacaatccaggtagtgagaacttgggctgcaaatac----atgtgtggggccat-t---------------------gtgtttactcgcagtt-ccactcagcgccaaggcGGCTGTCCCTGCAGTCCTTTCAGTATGGGGCATTTCC----CTTACACCGAGCAACTGACCTT----AGGGGTCCCAGCAAAATGGAGGAGATCATCCTAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31094884 199 + 172585720 caacctgatga-ttgtcagacaatccaggtagtgagaacttgggctgcaagtacatgtatgtgcagggccac-c---------------------gtgtttactcccagtt-ccactcagcaccaaggcggctgtccctgcagtcctttgagcatggggcatttcc----cttacactgaggaactgacctt----aggggtcccagcaaaatggaggagctcatcctagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30386946 199 - 170955103 caacctgatga-ttgtcagacaatccaggtagtgagaacttgggctgcaagtacatgtatgtgcagggccac-c---------------------gtgtttactcccagtt-ccactcagcaccaaggcggctgtccctgcagtcctttgagcatggggcatttcc----cttacactgaggaactgacctt----aggggtcccagcaaagtggaggagctcatcctagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     641576 199 +   1495729 caacctgatga-ttgtcagacaatccaggtagtgagaacttgggctgcaagtacatgtatgtgcagggccac-c---------------------gtgtttactcccagtt-ccactcagcaccaaggcggctgtccctgcagtcctttgagcatggggcatttcc----cttacactgaggaactgacctt----aggggtcccagcaaaatggaggagctcatcctagg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     742150 199 -    863181 caacctgatga-ttgtcagacaatccaggtagtgagaacttgggctgcaagtacatgtatgtgcagggccac-t---------------------gtgtttactcccagtt-ccactcagcaccaaggtggctgtccctgcagtcctttgagcatggggcatttcc----cttacactgaggaaatgacctc----aggggtcccagcaaaatggaggagctcatcctagg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29878189 195 -  71996105 caacttgatga-ttgtcagacaatccaggtagtgagaacttgggctgcaagtac----atgtgcagggccac-t---------------------gtgtttactcccagtt-ccactcagcaccaaggcagctgtccctgcagtcctttgagcatggggcatttcc----cttacactgaggaaatgacctc----aggggtcccagcaaaatggaggagctcatcctagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     652103 195 -    735854 caacctgatga-ttgccagacaatccaggtagtgagaacttgggctgcaagtac----atgtgcagggccac-t---------------------gtgtttactcccagtt-ccactcagcaccaaggcggctgtccctgcagtcctttcagcatggggcatttcc----cttacactgaggaaatgacctc----aggggtcccagcaaaatggaggagctcatcctagg
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30670651 204 + 171630274 tgactttatga-ttttcagacaatccaggtaaagtgaacgtaggctgcaaatac----atgtgaggggccactt---------------------gtgtttaCTCCCAGTT-CCACACAGCACCAAGGCGGCTATCCCTGTAGACCTTTGAGCATGGGGCATTTCCCTTACTTACACTGAGAAACTGACCATGGGGGGGGGTCCAAGAAAAATGGAGGAGATCATCCTAAG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1094996 201 -   1771730 TGACTTGATGA-TTTTCAGACAATCCAGGTAAAGTGAACTTAGGCTGCAAATAC----ATGTGAGGGGCCACTT---------------------GTGTTTACTCCCAGTT-CCACACAGCACTAAGGCGGCTGTCCCTGCAGACCTTTGAGCATGGGGCATTTCCCTTACTTACACTGAGAAACTGACCTT---AGGGGGTCCCAGAAAAATGGAGGAGATCGTCCTAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     283594 202 -    486031 TGACTTGATGA-TTTTCAGACAATCCAGGTAAAGTGAACTTAGGCTGAAGATAC----ATGTGAGGGGCCACTT---------------------GTGTTTACTCCCAGTTCCCACACAGCCCCAAGGCGGCGGTCTCTGCAGTCCTTTGAGCATGGGGCATTTCCCTTACTTACACTGAGGAACTGACCTT---AGGGGGGCCCAGAAAAATGGAGGAGATCATCCTAGG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           604204 216 +  18854210 cgacttgatgatttttcagaccatccaggtagtgtgaacttgggctgcaaatcc----atgtgaggAGCCAC-TTCTAGTTAAAAGCAGAAGCAAGTTTTCCCTCCCACTT--CACTCACCATCAGGGCAACTGTCCCGGTAGTCCTTCAAGAGTGGGGCATTTTT----CTTATACTAAGGATCTAGTCTT----AGGCATTCAGACTTAATAGAGGAGGTCATCCTATT
i otoGar3.GL873550         I 77729 C 0
e proCoq1.NW_012149775v1     533591 5408 -   1411461 I

a score=209586.000000
s hg38.chr6_GL000254v2_alt  1723702 22 +   4827813 AGATTTCCCACTTTGAGTGCTA
s panTro5.chr6             30604546 22 + 175400573 AGATTTCCCACTTTGAGTACTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31028576 22 + 173848474 AGATTTCCCACTTTGAGTGCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     537134 22 +   2037526 AGATTTCCCTCTTTGAGTGCTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75189171 22 + 122973662 AGATTTCCCACTTTCAGTGCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31095083 22 + 172585720 agatttcccactttgagtgcta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30387145 22 - 170955103 agatttcccactttgagtgcta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     641775 22 +   1495729 agatttcccactttgagtgcta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     742349 22 -    863181 agatttcccactttgagtgcta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29878384 22 -  71996105 agatttcccactttgagtgcta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     652298 22 -    735854 agatttcccactttgagtgcta
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30670855 22 + 171630274 AGACTTCCCACTTTGAGTGTTA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1095197 22 -   1771730 AGACTTCCTACTTTGAGTGCTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     283796 22 -    486031 AGACTTCCCACTTTCAGTGCTA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     538999 22 -   1411461 AGATTTCCCACTCTGAGTGCTA
i proCoq1.NW_012149775v1   I 5408 C 0
s otoGar3.GL873550           604420 22 +  18854210 ATGTGTCTCCCTTTCAGTGCTC
i otoGar3.GL873550         C 0 T 77616

a score=1463025.000000
s hg38.chr6_GL000254v2_alt  1723724 164 +   4827813 CTTGAGACTTGCCTCCTATTCCAAATTCCTTATGAGGCCATGGAAACTAAAGCTTAACTTGTCTACATTGAGCAAATGAGCTCAGGATAAAAGTAAATTCAGAGCTTCCTGATATTT-ATTAGACAGTTTTCACTGATGTGAAAGCCTCTCAGTGCTTTTATGAT
s panTro5.chr6             30604568 164 + 175400573 CTTGAGACTTGCCTCCTATTCCAAATTCCTTATGAGGCCATGGAAACTAAAGCTTAACTTGTCTACATTGAGCAAATGAGCTCAGGATAAAAGTAAATTCAGAGCTTCCTGGTATTT-ATTAGACAGTTTTCACTGATGTGAAAGCCTCTCAGTGCTTTTATGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31028598 164 + 173848474 CTTGAGACTTGCCTCCTATTCCAAATTCCTTATGAGGCCATGGAAACTAAAGCTTAACTTGTCTACATTGAGCAAATGAGCTCAGGATAAAAGTAAATTCAGAGCTTCCTGATATTT-ATTAGACAGTTTTCACTGATGTGAAAGCCTCTCAGTGCTTTTATGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     537156 164 +   2037526 CTTGAGCCTTGCCTCCTATTCCAAATTCCTTATGAGGCCATGGAAACTAAAGCTTAACTTGTCTTCATTGAGCAAATGAGCTCGGGATAAAAGTAAATTCAGAGCTTCCTGATATTT-ATTAGACAGTTTTCACTGATGTGAAAGCCTCTCAGTGCTTTTATGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75189193 163 + 122973662 CTTGAG-CTTGCCTCCTATTCCAAATGCCTTATGAGGCCATAGAAACTAAAGCTTAACTTGTCTACATAGAGCAAATGAGCTCAGGACAAAAGTAGATTCAGAGCTTCCTGATATTT-ATTCAACAGTTTTCACTGACGTGAAAGCCTCTCAGTGCTTTTATGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31095105 164 + 172585720 tttgagctttgcctcctattccaaatgccttatgaggccgtggaaactaaagcttaacttgtctacattgagcaaatgagctcaggacaaaagtaaattcagAGCTCCCTGATATTT-ATTAGACAGTTTTCACTGATGTGAAAGCCTCTCAGTGCTTTTATGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30387167 164 - 170955103 tttgagctttgcctcctattccaaatgccttatgaggccgtggaaactaaagcttaacttgtctacattgagcaaatgagctcaggacaaaagtaaattcagAGCTCCCTGATATTT-ACTAGACAGTTTTCACTGATGTGAAAGCCTCTCAGTGCTTTTATGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     641797 164 +   1495729 tttgagctttgcctcctattccaaatgccttatgaggccgtggaaactaaagcttaacttgtctacattgagcaaatgagctcaggacaaaagtaaattcagAGCTCCCTGATATTT-ACTAGACAGTTTTCACTGATGTGAAAGCCTCTCAGTGCTTTTATGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     742371 164 -    863181 tttcagctttgcctcctattccaaatgccttatgaggccatggaaactaaagcttaacttgtctacattgagcaaatgagctcaggacaaaagtaaattcagAGCTCCCTGATATTT-ATTAGACAGTTTTCACTGACGTGAAAGCCTCTCAGTGCTTTTATGAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29878406 164 -  71996105 tttgagctttgcctcctattccaaatgccttatgaggccgtggaaactaaagcttaacttgtctacattgagcaaatgagctcaggacaaaagtaaattcagAGCTCCCTGATATTT-ATTAGACAGTTTTCACTGACGTGAAAGCCTCTCAGTGCTTTTATGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     652320 164 -    735854 tttgagctttgcctcctattccaaatgccttatgaggccatggaaactaaagcttaacttgtctacattgagcaaatgagctcaggacaaaagtaaattcagAGCTCCCTGATATTT-ATTAGACAGTTTTCACTGACGTGAAAGCCTCTCAGTGCTTTTATGAT
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30670877 160 + 171630274 CTTGAGTTTTGCCTCCTGTTCCAAATGCCTTATATGACCATGGACACCAAAGCTTATC-TGTCTACATTGAACAAATGAGCTCAGGACAAAAGTAAA-TCAGAGTTCCCTGATTTTT-ATTAGGCAGTTTTC-CTGATGTGAAAGCC-CTCAGTGCTTTTATAAT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1095219 160 -   1771730 CTTAAGTTTTGCCTCCCATCCC-AATGCCTTATATGGCCATGGACACCAAAGCTTACCTTGTCTACACTGAGCAAATGAACTCAGGACAAAAGTAAA-TCAGAGTTCCCTGATATTT-ATTAGGCAGTTTTC-CTGATATGAAAGCC-CTCAGTGCTTTTATAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     283818 161 -    486031 CTTGAGCTTTGCCTCCTATTCCAAATGCCTTACATGGCCATGGACACCAAAGCTTATCTTGTCTACATTGAGTAAACGAGCTCATGACAAAAGTAAA-TCAGAGTTCCCTGATTTTT-ATTAGGCAGTTTTC-CTGATGTGAAAGTC-CTCAGTGCTTTTATGAT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     539021 165 -   1411461 CCCGAGCTTTGCCTTCTATTCCAAATGTTTTACGAGGCTGTGGAAACTGAAGCTTAACTATTCTACATTAAGTAAATGAGCTCAGGACAAAAGTAAATTCAGCACTCCCTGATTTTTTATTAGATAGTTTTCACTAAAGCACAAGCCTCTTAATACTTTTATGAT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           526826 163 +  18854210 ccTGAGCTTTGCAATTTATTCCAAATGCCTTATGAAGCCGT-GAACTTAAAGCTTAACTCTTCTACATCAAGTAAACGAGCTCAGGACAAAAGAGAATCCAGAGCTTACTGATTTTTGATTAGATGGTTTTTACTAAAGTGCAAACC-CCTAATACTTTTGTGAT
i otoGar3.GL873550         T 77616 I 292

a score=2161855.000000
s hg38.chr6_GL000254v2_alt  1723888 233 +   4827813 GTATTTTATCTTTTGATAACCCATTTTTTGTTAGCATGAGAGTAGGCGTAGATACCTAATATGCCACATTAGTGGTTcacaccttatccttaaagctccttatcacaaaccttcccatcttgttcctttgaagtcattgaatacctgagcaaactattagtcactacccatgcattgatgaggatctaacaataagatatttctttag---gcaaaatgaacttccagatggtctg
s panTro5.chr6             30604732 233 + 175400573 GTATTTTATCTTTTGATAACCCATTTTTTGTTAGCATGAGAGTAGGCGTAGATACCTAATATGCCACATTAGTGGTTcacaccttatccttaaagctccttatcacaaaccttcccatcttgttcctttgaagtcattgaatacctgagcaaactattagtcactacccatgcattgatgaggatctaacaataagatatttctttag---gcaaaatgaacttccagatgGTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31028762 233 + 173848474 GTATTTTATCTTTTGATAACCCATTTTTTGTTAGCATGAGAGTAGGCGTAGATACCTAATATGCCACATTAGTGGTTcacaccttatccttaaagctccttatcacaaaccttcccatcttgttcctttgaagtcattgaatacctgagcaaactattagtcactacccatgcattgatgaggatctaacaataagatatttctttag---gcaaaatgaacTTCCATATGGTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     537320 233 +   2037526 GTATTTTATCTTTTGATAACCCATTTTTTGTTAGCATGAGAGTAGGCGTAAATACCTAATATGCAACATTAGTGGTTcacaccttatacttaaagctccttatgacaaaccttcccatcttgttcctttgaagtcattgaatacctgagcaaactattagtcactacccatgcattgatgaggatctaacaataagatatttctttag---gcaaaatgaacttccagatggtctg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75189356 232 + 122973662 GTATTTTATCTTTCGATAACCCATTTTTTGTTAGCATGAGC-TAGGTGTGGATACCTAATATGCCACATTAGTGGTTcacaccttatccttaaagctccttatcacaaaccttcccatcttgttcctttgaagtcattgaatacctgagcaaacgattagtcactacccatgcattgataaggatctaacaataagacatttctttag---gcaaaatgaactttcagatggtctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31095269 233 + 172585720 GTATTTTATCTTTTGATAACCCATTTTTTGTTAGCACGAGAGTAGCTGTGGATACCTAATACGCCACATTAGTGGTTcacaccttattcttaaagctccttatcacaaaccttcccatcttgttcctttgaagtcattgaatatctgagcaaactattagccactacccatgcattgataaggatctaacaataagacatttctttag---gcaaaatgaacttccagatggtctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30387331 233 - 170955103 GTATTTTATCTTTTGATAACCCATTTTTTGTTAGCACGAGAGTAGGTGTGGATACCTAATATGCCACATTAGTGGTTcacaccttattcttaaagctccttatcacaaaccttcccatcttgttcctttgaagtcattgaatatctgagcaaactattagccactacccatgcattgataaggatctaacaataagacatttctttag---gcaaaatgaacttccagatggtctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     641961 233 +   1495729 GTATTTTATCTTTTGATAACCCATTTTTTGTTAGCACGAGAGTAGGTGTGGATACCTAATACGCCACATTAGTGGTTcacaccttattcttaaagctccttatcacaaaccttcccatcttgttcctttgaagtcattgaatatctgagcaaactattagccactacccatgcattgataaggatctaacaataagacatttctttag---gcaaaatgaacttccagatggtctg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     742535 233 -    863181 GTATTTTATCTTTTGATAACCCATTTTTTGTTAGCATGAGAGTAGGTGTGGATACCTAATACGCCACATTAGTGGTTcacaccttattcttaaagctccttatcacaaaccttcccatcttgttcctttgaaatcattgaatatctgagcaaactattagccactacccatgcattgataaggatctaacaataagacatttctttag---gcaaaatgaacttccagatggtctg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29878570 231 -  71996105 GTATTTTATCTTTTGATAACCCATTTTTTGTTAGCATGAGAGTAGATGTGGATACCTAATATGCCACATTAGTGGTTcacaccttattcttaaagctccttatcacaaaccttcccatcttgttcctttgaagtc--tgaatatctgagcaaactattagccactacccatgcattgataaggatctagcaataagacatttctttag---gcaaaatgaacttccagatggtctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     652484 233 -    735854 GTATTTTATCTTTTGATAACCCATTTTTTGTTAGCATGAGAGTAGGTGTGGATACCTAATACGCCACATTAGTGGTTcacaccttattcttaaagctccttatcacaaaccttcccatcttgttcctttgaaatcattgaatatctgagcaaactattagccactatccatgcattgataaggatctaacaataagacatttctttag---gcaaaatgaacttccagatggtctg
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30671037 232 + 171630274 GTATTTTGTCCTGTGGTAATCCA-TTTTTGTTTGCATGAGAGTAGGTGTGGATACCTAATGTGCCACATTAGTGGTTcatgccttatccttaaagctctttttcacaaaccttcccatcttgttcctttggagtcattgaatatttgagcagactattagccactacccatgcattgataaggatctaacagcaagaaatttctttag---gccaaatgaacttccagatggtctg
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1095379 232 -   1771730 GTATTTTATCTTGTGATAATCCA-TTTTTGTTTGCATGAGCGTGGGTGTGGATACCTAATGTACCACATTAGCGGTTcataccttatccttaaagctcgttatcacaaaccttccgatcttgttcctttggagtcattgaatatctgagcaaactattagccattacccatgcattgataaggatctaacaacaagacattgatttag---gccaaatgaacttccagatggtctg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     283979 232 -    486031 GTATTTTATCTTGTGATAATCCA-TTTTTGTTAGCATGAGAGTAGGTGTGGATACCTAATGTGCCACATTAGTGGTTcacactttatccttaaagctcgttatcacaaaccttcccatcttgttcctttggagtcattgaatatctgagcaaactattagccactacccatgcattgataaggatctaacaacaagacatttctttag---gccaaatgaacttctagatggtctg
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     539186 234 -   1411461 GTGTTTTATGTTTTGATTATCCA-TTTTTGTTAGCTTGAGGGTAGATGTGTATACCTAATGTGCCACATTAGTGTTTCGCacctcatccgcaaagctgcttatcacaaaccttcccatcttgttcctctcaagtcatcacatatctgagc-aaattttagccactgcccatgcattgataagaatccaacaataaggcatttctctttttggtaaagtagacttccagatggtctg
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           527281 224 +  18854210 GTGTTTTATGTTTCGATCACCTA-TTTTTGTGAGTTTGAGGATCAGTGTGGCTATCTAATTCATCATATTAGTGCTTCACGTCTCATCCTCAAAGGTCCTTGTCACAAACCTTTATATCTTG-TCTTTTCAAGCCATCAGGTATCTGAGCAAAATTTTAGCCACTGCCCATGCATTGATAAGGATCCAATAAGAAAGCAGTTCTTTTTTT-ACAAAG---------AGATGGTCCA
i otoGar3.GL873550         I 292 C 0

a score=22061.000000
s hg38.chr6_GL000254v2_alt  1724121 3 +   4827813 att
s gorGor5.CYUI01015528v1     537553 3 +   2037526 att
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75189588 3 + 122973662 att
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31095502 3 + 172585720 att
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30387564 3 - 170955103 att
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     642194 3 +   1495729 att
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     742768 3 -    863181 att
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29878801 3 -  71996105 att
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     652717 3 -    735854 att
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30671269 3 + 171630274 att
i calJac3.chr4             C 0 I 111
s cebCap1.NW_016107755v1    1095611 3 -   1771730 att
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496901v1     284211 3 -    486031 att
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     539420 3 -   1411461 att
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           527505 3 +  18854210 AAT
i otoGar3.GL873550         C 0 C 0
e panPan2.chr6             31028995 0 + 173848474 C
e panTro5.chr6             30604965 0 + 175400573 C

a score=390391.000000
s hg38.chr6_GL000254v2_alt  1724124 55 +   4827813 gaaaatcttcctgctggaggtactttcctttccactcttctttatgacaattcct
s gorGor5.CYUI01015528v1     537556 55 +   2037526 gaaaatcttcctgctggaggtactttcctttccactcttctttatgacaattcct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75189591 55 + 122973662 gaaaatcttcctgctggaggtactttccttcccactcttctttatgacaattcct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31095505 55 + 172585720 gaaaatcttcctgctggaagtactttcctttccactcttctttatgacaattcct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30387567 55 - 170955103 gaaaatcttcctgctggaagtactttcctttccactcttctttatgacaattctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     642197 55 +   1495729 gaaaatcttcctgctggaagtactttcctttccactcttctttatgacaattctt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     742771 55 -    863181 gaaaatcttcctgctggaagtactttcctttccactcttctttatgacaattcct
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29878804 55 -  71996105 gaaaatcttcctgctggaagtactttactttccactcttctttatgacaattcct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     652720 55 -    735854 gaaaatcttcctgctggaagtactttcctttccactcttctttatgacaattcct
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30671383 55 + 171630274 gaaaatccatctgctggaggtactttcccttctactcttctttatgacaattcct
i calJac3.chr4             I 111 C 0
s cebCap1.NW_016107755v1    1095615 55 -   1771730 aaaaatctatctgctggaggtactgtcccttccactcttctttatgacgattcct
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496901v1     284214 55 -    486031 gaaaatctatctgctggaggtactttcccttccactcttctttatgacaattcct
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     539423 55 -   1411461 aaaaatcttctcactgtgggtattttcctttctgctgctcttcataacaatttct
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           527508 55 +  18854210 AAAAATCTTCTCACCAGGGCTACTTTCCTTTCTACTGTTCTTCATGACAATTTCt
i otoGar3.GL873550         C 0 I 195
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=770009.000000
s hg38.chr6_GL000254v2_alt  1724179 117 +   4827813 aaaaagggctgtaatgctgcaa-agtacacttttgggtattcaaagcatattcaaatttcttcttctatagtcaacagtccttagggaactcctcaagaccccaaggatgagacaagg
s gorGor5.CYUI01015528v1     537611 117 +   2037526 gaaaagggctgtaatgctgcaa-agtacacttttgggtattcaaagcatattcaaatttcttcttctatagtcaacggtccttagggaactcctcaagaccccaaggatgagacaagg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75189646 117 + 122973662 gaaaagggctgtaatgctgcaa-agtacacttttgggtattcaaagcatattcaaatttcttcttctatagtcaacagtccttagggaactcctcaagacccaaaggatgagacaagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31095560 117 + 172585720 gaaaagggctgtaatgctgcaa-agtacacttttgggtattcaaagcatattcaaatttcttcttctatagtcaacagtccttagggaactcctcaagactccaaggatgagaccagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30387622 117 - 170955103 gaaaagggctgtaatgctgcaa-agtacacttttgggtattcaaagcatattcaaatttcttcttctatagtcaacagtccttagggaactcctcaagactccaaggatgagacaagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     642252 117 +   1495729 gaaaagggctgtaatgctgcaa-agtacacttttgggtattcaaagcatattcaaatttcttcttctatagtcaacagtccttagggaactcctcaagactccaaggatgagacaagg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     742826 117 -    863181 gaaaagggctgtaatgctgcaa-agtacacttttgggtattcaaagcatattcaaatttcttcttctatagtcaacagtccttagggaactcctcaggacttcaaggatgagacaagg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29878859 117 -  71996105 gaaaagggctgtaatgctgcaa-aggacacttttgggtattcaaagtatattcaaatttcttcttctatagtcaacagtccttagggaactcctcaggacttcaaggatgagacaagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     652775 117 -    735854 gaaaagggctgtaatgctgcaa-agtacacttttgggtattcaaagcatattcaaatttcttcttctatagtcaacagtccttagggaactcctcaggacttcaaggatgagacaagg
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30671438 117 + 171630274 gaaaaggactgtaatgctgcaa-agtccaccgttgggtattcaaatcatatttaaatttctttttctatagtcaacagtccttagggaactcctcaagaccccaaggatgagacaagg
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1095670 117 -   1771730 gaaaagggctgtaatgctgcaa-agtccacttttgggtATTCAAATCATATTTAAATTTATTTTTCTATAGTCAACAGTCCTTAGGGGACTCCTCAAGACCCCAAGGATGAGACAAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     284269 117 -    486031 gaaaagggctgtaatgctgcga-agtccacttttgggtattcaaatcatatttaaatttctttttctgtagtcaacagtccttagggaactcctcaagaccctaaggatgagacaagg
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     539478 117 -   1411461 gaaaggggctgtgatgctgtaacagtccacttctggatgttcaaacc-tattcaaatttcttcctctatagccaacagtccttagagaacttctcaagacctcagggatgagacaagg
i proCoq1.NW_012149775v1   C 0 I 678
e otoGar3.GL873550           527563 195 +  18854210 I
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=432037.000000
s hg38.chr6_GL000254v2_alt  1724296 81 +   4827813 gagagtggatttaccagtggtaataagaatactaggaatatagtacatattatgaggcaacttagctggccttgctaagga
s gorGor5.CYUI01015528v1     537728 81 +   2037526 gagagtggatttaccagtggtaataagaatactaggaatatagtacacattatgaggcaacttagctggccttgctaagga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75189763 81 + 122973662 gggagtggatttaccagtggcaataagaatactaggaatatagtacacattatgaggcaacttagctggccttgctaagga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31095677 81 + 172585720 gagaatggatttaccagtggtaataagaatactaggaatatagtacacattatgaggcaacttagctggccttgctaagga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30387739 81 - 170955103 gagaatggatttaccagtggtaataagaatactaggaatatagtacacattatgaggcaacttagctggccttgctaagga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     642369 81 +   1495729 gagaatggatttaccagtggtaataagaatactaggaatatagtacacattatgaggcaacttagctggccttgctaagga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     742943 81 -    863181 gagaatggatttaccagtggtaataagaatactaggaatatagtacacattatgaggcaacttagctggccttgctaagga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29878976 81 -  71996105 gagaatggatttaccagtggtaataagaatactaggaatatagtacacattatgaggcaacttagctggccttgctaagga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     652892 81 -    735854 gagaatggatttaccagtggtaataagaatactaggaatatagtacacattatgaggcaacttagctggccttgctaagga
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30671555 72 + 171630274 gagagtggatttaccagcagtaataagaatactaggaatatagcacacattatgaggcaacttagcag---------aaga
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1095787 72 -   1771730 GAGAGTGGATTTACCAGCAATAATAAGAATACTAGGAATATAGTACACATTATGAGGCAACTTAGCTG---------AAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     284386 72 -    486031 gagagtggatttaccagcagtaacaagaatactaggaatagagtacacattgtgaggcaacttagctg---------aaga
i aotNan1.NW_018496901v1   C 0 C 0
e proCoq1.NW_012149775v1     539595 678 -   1411461 I
e otoGar3.GL873550           527563 195 +  18854210 I
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=1218225.000000
s hg38.chr6_GL000254v2_alt  1724377 214 +   4827813 ccagctcaggtctgatact-gtatgtatatacagtatatatatccacttcctcct-------------gaatgctcac-----tgagt-----------gctggt----gaccataagtgaataaataaaatccaggtcatggtggacatctcaagtcacttggtcatttgctgtatcatgatcatggcattcagaatctaccagggctcagtagcaagccaggaactgttatttagtagaagaa----taA
s gorGor5.CYUI01015528v1     537809 210 +   2037526 ccagctcaggtctgatact-gtatgtatatacagtatatatatccacttcctcct-------------ga----tgac-----tgagt-----------gctggt----gaccataagtgaataaataaaatccaggtcatggtggacatctcaagtcacttggtcacttgctgtatcacgatcatggcattcagaatctaccagggctcagtagcaagccaggaactgttatttagtagaagaa----taa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75189844 210 + 122973662 tcagctcaggtctgatact-gtatgtatatacagtatatatatccacttcctcct-------------ga----tgac-----tgagt-----------gctggt----gaccataagcgaataaataaaatccaggtcatgatggacatctcaagtcacttggtcacttgctgtgtcatgatcatggcattcagaatctaccaggacccagtagcaagccaggaactgttatttagtggaagaa----taa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31095758 210 + 172585720 ccagctcaagtctgatact-gtatgtatatacagtatatatatccacttcctcct-------------ga----tgac-----tgagt-----------gctggt----gaccataagcgaataaataaaatccaggtcatgatggacatctcaagtcacttagttacttgctgtatcatgatcatggcattcagaatctaccagggcccaatagcaagccaagaactgttatttagtggaagaa----taa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30387820 210 - 170955103 ccagctcaagtctgatact-gtatgtatatacagtatatatatccacttcctcct-------------ga----tgac-----tgagt-----------gctggt----gaccataagcgaataaataaaatccaggtcatgatggacatctcaagtcacttagttacttgctgtatcatgatcatggcattcagaatctaccagggcccaatagcaagccaagaactgttatttagtggaagaa----taa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     642450 210 +   1495729 ccagctcaagtctgatact-gtatgtatatacagtatatatatccacttcctcct-------------ga----tgac-----tgagt-----------gctggt----gaccataagcgaataaataaaatccaggtcatgatggacatctcaagtcacttagttacttgctgtatcatgatcatggcattcagaatctaccagggcccaatagcaagccaagaactgttatttagtggaagaa----taa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     743024 214 -    863181 caagctcaagtctgatact-gtatgtatatacagtatatttatccactgcctcct-------------ga----tgac-----tgagt-----------gctggtgaccgaccataagagaataaataaaatccaggtcatgatggacatctcaagtcacttggttacttgctgtatcatgatcatggcattcagaatctaccagggcccaatagcaagccaagaactgttatttagtggaagaa----taa
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29879057 214 -  71996105 taagatcaagtctgatact-gtatgtatatacagtatatttatccactgccttct-------------ga----tgac-----tgagt-----------gctggtgaccgaccataagagaataaataaaatccaggtcatgatggacatctcaagtcacttggtaacttgctgtatcatgatcatggcattcagaatctaccagggcccaatagcaagccaagaacagttatttagtggaagaa----taA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     652973 214 -    735854 caagctcaagtctgatact-gtatgtatatacagtatatttatccactgcctcct-------------ga----tgac-----tgagt-----------gctggtgaccgaccataagagaataaataaaatccaggtcatgatggacatctcaagtcacttggttacttgctgtatcatgatcatggcattcagaatctaccagggcccaatagcaagccaagaactgttatttagtggaagaa----taa
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30671627 213 + 171630274 cctgttcaagtctgacact-ctatgtatatacactatatacgtccacttcctcct-------------ga----tgac-----tgagt-----------gctgat----gaacat-agtgaataaataaaatccaggtcatgatgggcatctcaagtcacttggtcatttgctgtgtcatgatcagcgcattcagaatctaccagggcccagtagcaagccaggaactgttatttagtagtgggataattaa
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1095859 210 -   1771730 CCTGTTCAAGTCTGACACT-GTATGTTTATATGCTTTATATGTCCACTTCCTCCT-------------GA----TGAC-----TGAGT-----------GCTGAT----GAACACAAGTGAATAAATAAAATCCAGGTCATGATGGACATCTCAAGTCATTTGGTCATTTGCTGTGTCATGATCAGGGCATTCAGAATCTACGAGGGCCCAGCAGCAAGCCAGGAACTGTTATTTAGTGGGAGAA----TAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     284458 210 -    486031 cctgttcaagtctgacact-gtatgtatatacactatatacgtccacttcctcct-------------ga----tgat-----tgagt-----------gctgat----gaacataagtgaataaataaaatccaggtcatgatggacatctcaagtcacttggtgatttgctgtgtcatgatcagggcattcagaatctaccagggcccagtagcaagccaggaactgttatttagtgggagaa----taA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           527758 238 +  18854210 cttgctcaggctggtctccaatctgtgagctcagca-atccacccacctcagcctcccagagtgctagga----ttacaggcgtgagccaccgtgcccagcTGGC----AGGCAttagtgagtgcataaaactcagctcatgatgggcatgtcaggtcacttggtcatttgctatatcatgat-atagaattcagaatctaccaggcttctatagcaagccagaaactgttacttaaagggagaa----taa
i otoGar3.GL873550         I 195 C 0
e proCoq1.NW_012149775v1     539595 678 -   1411461 I
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=370575.000000
s hg38.chr6_GL000254v2_alt  1724591  96 +   4827813 AGAATAAAGC-TTTTCTTCGAAGCCCTG----------GAACTTGAGCAGTGAGCTCCTATGCCTGTTT----cacacacacacacacacacacacacacacgcgcacaca
s gorGor5.CYUI01015528v1     538019  87 +   2037526 agaataaagc-ttttcttcaaagccctG----------GAACTTGAGCAGTGAGCTCCTATGCCTGTTT----cacacacacacacacacacacacacacac---------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75190054  63 + 122973662 agaataaagc-ttttcttcaaagcccta----------gaACTTGAGCAATGAGCTCCTATGCCTGTTT----CACAC---------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31095968  91 + 172585720 agaataaagc-ttttcttcaaagccctG----------GGACTTGAGTAGTGAGCTTCTATGCCTGTTT----CTcacacacacacacacacacacacacacacac-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30388030  91 - 170955103 agaataaagc-ttttcttcaaagccctG----------GAACTTGAGTAGTGAGCTTCTATGCCTGTTT----cacacacacacacacacacacacacacacacac-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     642660  95 +   1495729 agaataaagc-ttttcttcaaagccctG----------GAACTTGAGTAGTGAGCTTCTATGCCTGTTTcacacacacacacacacacacacacacacacacacac-----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     743238 101 -    863181 agaataaagc-ttttcttcaaagctttgaagTAGTAGTGAACTTGAGTAGTGAGCTTCTATGCCTGTTT----CTCACGcacacacacacacacacacacacacac-----
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29879271  93 -  71996105 AGAATAAAGC-TTTTCTTCAAAGCTTTGAAGTAGTAGTGAACTTGAGTAGTGAGCTTCTATGCCTGTTT----CT--------cacacacacacacacacacacac-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     653187 101 -    735854 agaataaagc-ttttcttcaaagctttgaagTAGTAGTGAACTTGAGTAGTGAGCTTCTATGCCTGTTT----CTCTcacacacacacacacacacacacacacac-----
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30671840  81 + 171630274 agaatagagc-ttttcttcaaagccctg----------gaacttgggcagtgaactcctatgcctgTTT--------------cacacacacatacacacacacac-----
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1096069  83 -   1771730 AGAATAGAGC-TTTTCTTCAAAGCCCTG----------GAACTTGGGCAGTGAGCTCCTATGCCTGTTT----ca--------cacacacacacacacacacacac-----
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           527996  87 +  18854210 agaatatagctttttctttaaaacct------------ggacttgagcagtgaGAGCTTATGACCACTT----CAGacacacacacacacacacacacacTCA--------
i otoGar3.GL873550         C 0 C 0
e proCoq1.NW_012149775v1     539595 678 -   1411461 I
e aotNan1.NW_018496901v1     284668   0 -    486031 C
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=325388.000000
s hg38.chr6_GL000254v2_alt  1724687 103 +   4827813 cacacacacgcgcgcacacacacacacacacacacacacacacaca----------caTATCCAAGGAAGCATTTA-GGCCAAATGGCAGATATGT-------TTGATG---CCTGCCTGGATC
s gorGor5.CYUI01015528v1     538106  66 +   2037526 -------------------------------------acacacaca----------AATATCCAAGGAAGCATTTA-GGCCAAATGGCAGATATGT-------TTGATG---CCTGCCTGGATC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75190117  66 + 122973662 -------------------------------------AAACACACA----------AATATCCAAGGAAGCATTTA-GGCCAAATGGCAGATATGT-------TTGATG---CCTGCCTGGATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31096059  66 + 172585720 -------------------------------------acacacaca----------AATATCCAAGGAAGCATTTA-GGCCAAATGGCAGATATGT-------TTGATG---CCTGCCTGGATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30388121  66 - 170955103 -------------------------------------acacacaca----------AATATCCAAGGAAGCATTTA-GGCCAAATGGCAGATATGT-------TTGATG---CCTGCCTGGATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     642755  66 +   1495729 -------------------------------------acacacaca----------AATATCCAAGGAAGCATTTA-GGCCAAATGGCAGATATGT-------TTGATG---CCTGCCTGGATC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     743339  56 -    863181 -------------------------------------ac--------------------aTCCAAGGAAGCATTTA-GGCCAAATGGCAGATATGT-------TTGATG---CCTGCCTGGATC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29879364  60 -  71996105 -------------------------------------acacac----------------aTCCAAGGAAGCATTTA-GGCCAAATGGCAGATATGT-------TTGATG---CCTGCCTGGATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     653288  60 -    735854 -------------------------------------acacac----------------aTCCAAGGAAGCATTTA-GGCCAAATGGCAGATATGT-------TTGATG---CCTGCCTGGATC
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30671921  66 + 171630274 -------------------------------------acacacaca----------AATATCCAAGGAAGCATTTA-GGCCAAATGGCAGATATGC-------TTGATG---CCTGCCGGGATC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1096152  66 -   1771730 -------------------------------------acacacaca----------cacaTCAAAGGAAGCATTTA-GGCCAAATGGCAGATATGC-------TTGATG---CCTGCCTGGATC
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     540273 104 -   1411461 ----------cacacacacacatgtacacacacacacacacacacactcactcaacaATATCCAAATAAGCATTTAGGGCCAAATGGTAGATATGC-------TTGACT---ACTGCCTGGATC
i proCoq1.NW_012149775v1   I 678 C 0
s otoGar3.GL873550           528083  70 +  18854210 ------------------------------------------------------ACAATATCCAAATAAGCATTTAAGGCCAAATGGCAGATGTGCTAACTATTTGACTACCACTGCCTGGATC
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018496901v1     284668   0 -    486031 C
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=1021458.000000
s hg38.chr6_GL000254v2_alt  1724790 152 +   4827813 AGAATGACATTTCCATTTCTTAT-GGAATG-TTTTGAACTTGTACTAACTTACCGGATTTTGGTGCAGAGAAATCCCCTCACAAGATAAGAAATC-ACAT-TTTTTCTTTGTTGAAATTATTTATCTTCATTAACGTTTAATAACACCGGTGCAGT
s gorGor5.CYUI01015528v1     538172 152 +   2037526 AGAATGGCATTTCCATTTCTTAT-GGAATG-TTTTGAACTTGTACTAACTTACCGGATTTTGGTGCAGAGAAATCCCCTCACAAGATAAGAAATC-ACAT-TTTTTCTTTGTTGAAATTATTTATCTTCATTAACGTTTAATAACATCGGTGCAGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75190183 152 + 122973662 AGAATGACATTTCCATTTCTTAT-GGAACG-TTTTGCACTTGTACTAACTTACCGGATTTTGGTCCAGAGAAATTCCCTCACAAGATAAGAAATC-ACAT-TTTTTCTTCGTTGAAATTATTTATCTTCATTAGCGTTTAATAACAGTGGTGCATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31096125 152 + 172585720 AGAATGACATTTCCATTTCTTAT-GGAACA-TTTTGCACTTGTACTAACTTACCAGATTTTAGTTCAGAGAAATCCCCTCACCAGATAAGAAATC-ACAA-TTTTTCTTTGTTGAAATTATTTATCTTCATTAACGTTTAATAACACTGGTGCGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30388187 152 - 170955103 AGAATGACATTTCCATTTCTTAT-GGAACA-TTTTGCACTTGTACTAACTTACCAGATTTTAGTTCAGAGAAATCCCCTCACTAGATAAGAAATC-ACAA-TTTTTCTTTGTTGAAATTATTTATCTTCATTAACGTTTAATAACACTGGTGCGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     642821 152 +   1495729 AGAATGACATTTCCATTTCTTAT-GGAACA-TTTTGCACTTGTACTAACTTACCAGATTTTAGTTCAGAGAAATCCCCTCACTAGATAAGAAATC-ACAA-TTTTTCTTTGTTGAAATTATTTATCTTCATTAACGTTTAATAACACTGGTGCGGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     743395 152 -    863181 AGAATGACATTTCCATTTCTTAT-GGAACA-TTTTGCACTTGTACTAACTTACCAGATTTTGGTTCAGAGAAATCCCCTCACAAGATAAGAAATC-ACAA-TTTTTCTTTGTTGAAATTATTTATCTTCATTAACGTTTAATAACACCGGTGCGGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29879424 152 -  71996105 AGAATGACATTTCCATTTCTTAT-GGAACA-TTTTGCACTTGTACTAACTTACCGGATTTTGGTTTAGAGAAATCCCCTCACAAGATAAGAAATC-ACAA-TTTTTCTTTGTTGAAATTATTTATCTTCATTAACGTTTAATAACACCGGTGCGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     653348 152 -    735854 AGAATGACATTTCCATTTCTTAT-GGAACA-TTTTGCACTTGTACTAACTTACCAGATTTTGGTTCAGAGAAATCCCCTCACAAGATAAGAAATC-ACAA-TTTTTCTTTGTTGAAATTATTTATCTTCATTAACGTTTAATAACACCGGTGCGGT
i manLeu1.NW_012107142v1   C 0 C 0
s calJac3.chr4             30671987 147 + 171630274 AGAATGACATTTCCATTTCTTAT-GGTACA-TTTTGTGCTTGTACTAACTTAACAGATTTTGGTTCAGAGGAATCCCATCACAAGCTAAGAAATC-ACAA-TTTTTCTTTGTTGAAA----TTATCTACATTA-GGTTTAATAACATCAGTGCAGT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1096218 152 -   1771730 AGAATGACATTTCCATTTCTTAT-GGTACA-TTTTGCACTTGTACTAACTTAACAGATTTTGGTTCAGAGAAATTCCCTCACAAGCTAAGAAATC-ACAA-TTTTTCTTTGTTGAAATTATTTATCTACCTTAGGGTTTAATAACATCAGTGCGGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     284668 152 -    486031 AGAATGACATTTCCATTTCTTAT-GGTACA-TTTTGCACTTGTACTAACTTAACAGATTTTGGTTCAGAGAAATCCCATCACAAGCTAAGAAATC-ACAA-TTTTTCTTTGTTGAAATTATTTATCTACATTAGGGTTTAATAACATCAGTGCAGT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     540377 155 -   1411461 AGAGTGACATTTCCATTTCTTATGGGAACATTTTTGTACTTGTACTACCTTATGGGATTTTGGACTAGAGAAATCTCCTTGCAGGATAAGAAGTC-ACAACTTTTTCTTTGGTGAAATTATGTGTCTTCATTAGGGTTCAATAACACCAGTGCAGT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           528153 156 +  18854210 CAAGTAACATTTACATTTCTTATGGGAACGTTTTTGTATGCATACTACTTTATGGGATTTTGAATAAAAGAAATTCCTTTGCAGGATAAGAAGTCAACAACTTTTTCTTTGGTGAAATTATCTGGCTTTATTAGGGTTCAGTAACACTAGTGCAGT
i otoGar3.GL873550         C 0 C 0
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=31613.000000
s hg38.chr6_GL000254v2_alt  1724942  8 +   4827813 TATTT-------------TTC
s gorGor5.CYUI01015528v1     538324  8 +   2037526 TATTT-------------TTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75190335  8 + 122973662 TATTT-------------TTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31096277  8 + 172585720 TATTT-------------TTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30388339  9 - 170955103 TATTTT------------TTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     642973 21 +   1495729 TATTTTTCAAAGAGCTTGTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     743547  8 -    863181 TATTT-------------TTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29879576  8 -  71996105 TATTT-------------TTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     653500  8 -    735854 TATTT-------------TTC
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1    1096370  8 -   1771730 GATTT-------------TTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     284820  8 -    486031 GATTT-------------TTC
i aotNan1.NW_018496901v1   C 0 I 40
s proCoq1.NW_012149775v1     540532  8 -   1411461 TATTC-------------CTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           528309  8 +  18854210 TACTT-------------TTT
i otoGar3.GL873550         C 0 C 0
e calJac3.chr4             30672134  0 + 171630274 C
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=454973.000000
s hg38.chr6_GL000254v2_alt  1724950 87 +   4827813 AAAGAGCTTGTACTCC--AATCTTGGAGGAATTCCTTGAGTTGAAAAGCCCAGGGCCTGAATAATGAGGGAGTCTCATTTCCAACAGCT
s gorGor5.CYUI01015528v1     538332 87 +   2037526 AAAGAGCTTGTACTCC--AATCTTGGAGGAATTCCTTGAGTTGAAAAGCCCAGGGCCTGAATAATGAGGGAGTCTCATTTCCAACAGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75190343 87 + 122973662 AAAGAGCTCGTACTCC--TATCTTGGAGGAATTCCTTGACTTGAAAAGCCTAGGGCCTGAATAATGGGGGAGTCTCATTTCCAACAGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31096285 87 + 172585720 AAAGAGCTTGTACTCC--AATCTTGGAGGAATTCCTTAAGTTGAAAAGCCCAGGGCCTGAATAATGAGGAAGTCTCATTCCCAACAGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30388348 87 - 170955103 AAAGAGCTTGTACTCC--AATCTTGGAGGAATTCCTTAAGTTGAAAAGCCCAGGGCCTGAATAATGAGGAAGTCTCATTCCCAACAGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     642994 87 +   1495729 AAAGAGCTTGTACTCC--AATCTTGGAGGAATTCCTTAAGTTGAAAAGCCCAGGGCCTGAATAATGAGGAAGTCTCATTCCCAACAGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     743555 87 -    863181 AAAGAGCTTGTACTCC--AATCTTGGAGGAATTCCTTAAGTTGAAAAGCCCAGGGCCTGAATAATGAGAAAGTCTCATTTCCAACAGCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29879584 87 -  71996105 AAAGAGCTTGTACTCC--AATCTTGGAGGAATTCCTTAAGTTGAAAAGCCCAGGGCCTGAATAATGAGGAAGTCTCATTTCCAACAGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     653508 87 -    735854 AAAGAGCTTGTACTCC--AATCTTGGAGGAATTCCTTAAGTTGAAAAGCCCAGGGCCTGAATAATGAGAAAGTCTCATTTCCAACAGCT
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1    1096378 87 -   1771730 AAAGAGCTTATACTCC--AATCTTGGAGAAATTCTTTAAGTTGAAAAGCCCAGGACCTGAATAATGAGGGAGTCTCATTGCCAACAGCT
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     540540 89 -   1411461 AAAGAGCTTGTACTCCTTAGAGTTAGAGGATTTTCTCAAGTTAAAAAGCCCAGGGCCTGAAAAGTAGGGGAGGCTCATTTCCAACAGCT
i proCoq1.NW_012149775v1   C 0 I 57
s otoGar3.GL873550           528317 89 +  18854210 TAAAAGCTTGTACTCCTTAGAGTTAGAGGTTTTTCTCAAGTTAAAAAGCCCAGCGTCTGAAAACTAGGGGAGTCTCATTTCCAACAGCT
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018496901v1     284828 40 -    486031 I
e calJac3.chr4             30672134  0 + 171630274 C
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=261951.000000
s hg38.chr6_GL000254v2_alt  1725037 68 +   4827813 TCCAATCAGCTGTAGGATTGAATGAAGACACATGTGATTGCATGATTTTAAGAGAGGGTAGGGGAGAG
s gorGor5.CYUI01015528v1     538419 68 +   2037526 TCCAATCAGCTGTAGGATTGAATGAAGACACATGTGATTGCATGATTTTAAGAGAGGGTAGGGGACAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75190430 68 + 122973662 TCCAATCTGCTGTAGGATTGAATGAAGACACATGTGATTGCATGGTTTTAAGAGAGGGTAGGGGACAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31096372 67 + 172585720 TCCAATCAGCT-TAGGATTGAATGAAGACACATGTGATTGCATGGTTTTAAGAGAGGGTAGGGGACAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30388435 67 - 170955103 TCCAATCAGCT-TAGGATTGAATGAAGACACATGTGATTGCATGGTTTTAAGAGAGGGTAGGGGACAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     643081 67 +   1495729 TCCAATCAGCT-TAGGATTGAATGAAGACACATGTGATTGCATGGTTTTAAGAGAGGGTAGGGGACAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     743642 65 -    863181 TCCAATCAGCT-TAGGATTGAATGAAGACAC--GTGATTGCATGGTTTTAAGAGAGGGTAGGGGACAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29879671 65 -  71996105 TCCAATCAGCT-TAGGATTGAATGAAGACAC--GTGATTGCATGGTTTTAAGAGAGGGTAGGGGACAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     653595 65 -    735854 TCCAATCAGCT-TAGGATTGAATGAAGACAC--GTGATTGCATGGTTTTAAGAGAGGGTAGGGGACAT
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1    1096465 68 -   1771730 TCCAACCAGCTGTAGGACTGAATGAAGGCACATGTGACTCCATGGTTTTAAGAGAGGGTAGAGGACAT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           528406 66 +  18854210 -ACAACCAGCTGTAGAATTGATGAATGTCATGTGCAACTGCATAA-TTTGGGGGAGCATAGAAGACAA
i otoGar3.GL873550         C 0 C 0
e proCoq1.NW_012149775v1     540629 57 -   1411461 I
e aotNan1.NW_018496901v1     284828 40 -    486031 I
e calJac3.chr4             30672134  0 + 171630274 C
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=158364.000000
s hg38.chr6_GL000254v2_alt  1725105 29 +   4827813 GGGCAGTGCTTGTTTCACACTTAACTGAA
s gorGor5.CYUI01015528v1     538487 29 +   2037526 GGGCAGTGCTTGTTTCACACTTAACTGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75190498 29 + 122973662 GGGCAGAGCTTGTTTCACACTTAACTGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31096439 29 + 172585720 GGGCAGTGCTTGTTTCACACTTAACTGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30388502 29 - 170955103 GGGCAGTGCTTGTTTCACACTTAACTGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     643148 29 +   1495729 GGGCAGTGCTTGTTTCACACTTAACTGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     743707 29 -    863181 GGGCAGTGCTTGTTTCACACTTAACTGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29879736 29 -  71996105 GGGCAGTGCTTGTTTCATACTTAACTGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     653660 29 -    735854 GGGCAGTGCTTGTTTCACACTTAACTGAA
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1    1096533 29 -   1771730 AGGCAGTGCTTGCTTCACACTTCACTGAG
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     540686 29 -   1411461 GGGCAGCCCTTGCTTCACACTTAACTGAA
i proCoq1.NW_012149775v1   I 57 C 0
s otoGar3.GL873550           528472 29 +  18854210 AGGTAGCACTTGTTTCCCACTTAATTGAA
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018496901v1     284828 40 -    486031 I
e calJac3.chr4             30672134  0 + 171630274 C
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=309305.000000
s hg38.chr6_GL000254v2_alt  1725134 51 +   4827813 CTACTTCCTTGGCCTCCACTCAAATTTAACTGCAGCATTGGTGACTTGATT
s gorGor5.CYUI01015528v1     538516 51 +   2037526 CTACTTCCTTGGCCTCCATTCAAATTTAACTGCAGCGTTGGTGACTTGATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75190527 51 + 122973662 CTACTTCCTTGGCCTCCATTCAAATTTAACTGCAGTGTTGGCGACGTGATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31096468 51 + 172585720 CTACTTCCTTGGCCTCCATTCAAATTTAACTGCAGCGTTGATGACTTGATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30388531 51 - 170955103 CTACTTCCTTGGCCTCCATTCAAATTTAACTGCAGCGTTGATGACTTGATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     643177 51 +   1495729 CTACTTCCTTGGCCTCCATTCAAATTTAACTGCAGCGTTGATGACTTGATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     743736 51 -    863181 CTACTTCCTTGGCCTCCATTCAAATTTAACTGCAGCGTTGGTGACTTGATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29879765 51 -  71996105 CTACTTCCTTGGCCTCCATTCAAATTTAACTGCAGCGTTGGTGACTTGATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     653689 51 -    735854 CTACTTCCTTGGCCTCCATTCAAATTTAACTGCAGCGTTGGTGACTTGATT
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1    1096562 51 -   1771730 ATACGTCCTTggcctccattcaaacttagctgcagtgttggtggcttgatt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     284868 51 -    486031 CTACGTCCTTggcctccattcaaacttagctacagtgttggtggcttgatt
i aotNan1.NW_018496901v1   I 40 C 0
s proCoq1.NW_012149775v1     540715 51 -   1411461 CCACTTCCATGACCTCCATTCAACTTTAGCTGCATTTTTGGTGGCTTGATT
i proCoq1.NW_012149775v1   C 0 N 0
s otoGar3.GL873550           528501 51 +  18854210 CCACTTCCGTGATCTCCCTTCAACTTTAGCTGCTGTTTTGGTGAGTTGATC
i otoGar3.GL873550         C 0 C 0
e calJac3.chr4             30672134  0 + 171630274 C
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=123695.000000
s hg38.chr6_GL000254v2_alt  1725185 23 +   4827813 TACAGAG--TCAGAAATTTCCTAGG
s gorGor5.CYUI01015528v1     538567 23 +   2037526 TACAGAG--TCAGAAATTTCCTAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75190578 23 + 122973662 TACAGAG--TCAGAAATTTCTCAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31096519 23 + 172585720 TACAGAG--TCAGAAATTTCTCAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30388582 23 - 170955103 TACAGAG--TCAGAAATTTCTCAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     643228 23 +   1495729 TACAGAG--TCAGAAATTTCTCAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     743787 23 -    863181 TACAGAG--TCAGAAATTTCTCAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29879816 23 -  71996105 TACAGAG--TCAGAAATTTCTCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     653740 23 -    735854 TACAGAG--TCAGAAATTTCTCAGG
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1    1096613 23 -   1771730 tacagag--tcagaaatttctcagg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     284919 23 -    486031 tacaagg--tcagaaatttcccagg
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           528552 25 +  18854210 CACAGATTCTCAGAAAATTCTCAGG
i otoGar3.GL873550         C 0 C 0
e calJac3.chr4             30672134  0 + 171630274 C
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=170303.000000
s hg38.chr6_GL000254v2_alt  1725208 37 +   4827813 TATGGAATGTGCTGTCTTAAATAGTAATGAGTCCAAT
s gorGor5.CYUI01015528v1     538590 37 +   2037526 TATGGAATGTGCTGTCTTAAATAGTAATGAGTCCAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31096542 37 + 172585720 TGTGGAATGTGCTGTCTTAAATAGTAATGAGGCCAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30388605 37 - 170955103 TGTGGAATGTGCTGTCTTAAATAGTAATGAGGCCAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     643251 37 +   1495729 TGTGGAATGTGCTGTCTTAAATAGTAATGAGGCCAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     743810 37 -    863181 TATGGAATGTGCTGTCTTAAATAGTAACGAGGCCAAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29879839 37 -  71996105 TATGGAATGTGCTGTCTTAAATAGTAATGAGGCCAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     653763 37 -    735854 TATGGAATGTGCTGTCTTAAATAGTAACGAGGCCAAT
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1    1096636 37 -   1771730 tatggaatgtgctgtcttaaatagtaatgaggccaac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     284942 37 -    486031 tatggaatgtgctgtcttaaatagtaatgaggccaat
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           528577 37 +  18854210 CATGAAGTGTGCTGTCTCCAATACTAAAGAGGCCAAT
i otoGar3.GL873550         C 0 I 85020
e calJac3.chr4             30672134  0 + 171630274 C
e nomLeu3.chr1a            75190601  0 + 122973662 C
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=1845644.000000
s hg38.chr6_GL000254v2_alt  1725245 530 +   4827813 CTATGTAGAGTGTCCTTCTTTATCATTGGGGGTCATATGAAGTCAGCGATTCTTTTAGAAATTTGGGGTTACAAACAGAAGGCCTCAACTTACTTCAATTTGAAAAACCTGAACAAGGAATCTCTGGTGTCTGGATCCTTATTTGTCTCACAAAATTGAATTGTGAGCTGTGACATTTTCTCCCAAAAGTCTCTTTTAGgacagaacttctggtaatggcaacatgaacaggtagatcagcaagtcttcctctaaatagcaatatgagaactggacaaaatcataaaaataaatatttgaagtcactggaaaac------aaacaaaggcgagcagaaatgtaatagtgctttgatcttgaga--cta-tctattgggtaaaagctgcaagttggtggcctttcctccttacctatgagtttgctccaaactcccaGCAGGTAACTGCAGCCCTAATGGATCAATAGGGCAGTTTATAGAGTTAAAAGCCCAAATAAGCTAAAAATGTTTACATTTTTACATGTTTACATCAGTCAGGC
s gorGor5.CYUI01015528v1     538627 509 +   2037526 CTATGTAGAGTGTCCTTCTTTATCATTGGGGGTCATATGAAGTCTGCGATTCTTTTAGAAATTTGGGGTTACAAACAGAAGGCCTCAACTTACTTCAATTTGAAAAACCTGAACAAGGAATCTCTGGTGTCTGGATCCTTATTTGTCTCACAAAATTGAATTGTGAGCTGTGACATTTTCTCCCAAAAGTCTCTTTTAGgacagaacttctggtaatggcaacatgaacagatagatcagcaagtcttcctctaaacagcaatatgaaaactggacaaaataataaaaatgaatatttgaagtcactggaaaac------aaacaaaggcaagcagaaatgtaatagtgctttgatcttgagagactactctattgggtaaaagctgcaagttggtggcctttcctccttacctatgagttcgctccaaactcccaGCAGGTAACTGCAGCCCTAATGGATCAATAGGGTAGTTTATAGAGTTAAAAGCCCAAATAAGCTAAAAATGTAAA------------------------AGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31096579 502 + 172585720 CTATATAGACTGTCCTTCTTTATCATTGGGGGTCATATAAAGTCAGTGATTCCTTTAGAAATTTGAGGTTACAAACACAAGGCCTCAACTCACTTCAATTTGAAAAACCCGAACAAGGAATATCTGATGCCTGGATCCTTATTTGTCTCACAAAACTGAATTGTGAGCTGTGACATTTTCTCCCAAAAGTCTCTTTTAGCAcagaacttctggtaatggcaacatgaagagatagatcagcaagtgttcctctaaatagcaatatgaaaactggacaaaatgctaaaaataactatttgaagtcactggtaaac---aaaaaaaaaaggcaagcaaaaatgtaatagcgctttgatcttga----------tattgggtaaaagctgtaaattggtggcctttcctccttacctatgagtttgctccaacctcccaGCTAGTAACTTCAGCCCTAATGGCTCAAGAGGGCAGTTTATAGAGTTAAAAGCCAAAATAAGCTAAAAATGTAAA------------------------AGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30388642 505 - 170955103 CTATATAGACTGTCCTTCTTTATCATTGGGGGTCATATAAAGTCAGTGATTCCTTTAGAAATTTGAGGTTACAAACACAAGGCCTCAACTCACTTCAATTTGAAAAACCCGAACAAGGAATATCTGATGCCTGGATCCTTATTTGTCTCACAAAACTGAATTGTGAGCTGTGACATTTTCTCCCAAAAGTCTCTTTTAGgacagaacttctggtaatggcaacatgaagagatagatcagcaagtgttcctctaaatagcaatatgaaaactggacaaaatgctaaaaataactatttgaagtcactggtaaacaaaaaaaaaaaaaggcaagcaaaaatgtaatagcgctttgatcttga----------tattgggtaaaagctgtaaattggtggcctttcctccttacctatgagtttgctccaacctcccaGCTAGTAACTGCAGCCCTAATGGCTCAAGAGGGCAGTTTATAGAGTTAAAAGCCAAAATAAGCTAAAAATGTAAA------------------------AGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     643288 503 +   1495729 CTATATAGACTGTCCTTCTTTATCATTGGGGGTCATATAAAGTCAGTGATTCCTTTAGAAATTTGAGGTTACAAACACAAGGCCTCAACTCACTTCAATTTGAAAAACCCGAACAAGGAATATCTGATGCCTGGATCCTTATTTGTCTCACATAACTGAATTGTGAGCTGTGACATTTTCTACCAAAAGTCTCTTTTAGgacagaacttctggtaatggcaacatgaagagatagatcagcaagtgttcctctaaatagcaatatgaaaactggacaaaatgctaaaagtaactatttgaagtcactggtaaac--aaaaaaaaaaaggcaagcaaaaatgtaatagcgctttgatcttga----------tattgggtaaaagctgtaaattggtggcctttcctccttacctatgagtttgctccaacctcccaGCTAGTAACTGCAGCCCTAATGGCTCAAGAGGGCAGTTTGTAGAGTTAAAAGCCAAAATAAGCTAAAAATGTAAA------------------------AGAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     743847 508 -    863181 CTATATAGACTGTCCTTCTTTATCATTGGGGGTCATATAAAGTCAGTGATTCCTTTAGAAATTTGGGGTTACAAACACAAGGCCTCAACTCACTTCAATTTGAAAAACCCAAACAAGGAATATCTAGTGCCTGGATCCTTATTTGTCTCACAAAACTGAATTGTGAGCTGTGACATTTTCTCCCAAAAGTCTCTTTTGGgacagaacttctggtaatggcaacatgaagagatagatcagcaagtgttcctctaaatagcaatatgaaaactggacaaaatactaaaaataattatttgaagtcactggaaaac------aagaaaaggcaagcagaaatgtaatagcgctttgatcttgagagactactctattgggtaaaagctgtaaattggtggcctttcctccttacctatgagttcactccaacctcaTAGCAGGTAACTGCAGCCCTAATGGCTCAAGAGGGCAGTTTATAGAGTTAAAAGTCAAAATAAGCTAAAAATGT-AA------------------------AGAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29879876 509 -  71996105 CTATATAGACTGTCCTTCTTTATCATTGGGGGTCATATAAAGTCAGTGATTCCTTTAGAAATTTGGGGTTACAAACACAAGGCCTCAACTCACTTCAATTTGAAAAACCCAAACAAGGAATATCTGGTGCCTGGATCCTTATTTGTCTCACAAAACTGAATTGTGAGCTGTGACATTTTCTCCCAAAAGTATCTTTTGGgacagaacttctggtaatggcaacatgaagagatagatcagcaagtgttcctctaaatagcaatatgaaaactggacaaaatactaaaaataattatttgaagtcactggaaaac------aagaaaaggcaagcagaaatgtaatagcgctttgatcttgagagactactctattgggtaaaagctgtaaattggtggcctttcctccttacctatgagttcactccaacctcaTAGCAGGTAACTGCAGCCCTAATGGCTCAAGAGGGCAGTTTATAGAGTTAAAAGTCAAAATAAGCTAAAAATGTAAA------------------------AGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     653800 509 -    735854 CTATATAGACTGTCCTTCTTTATCATTGGGGGTCATATAAAGTCAGTGATTCCTTTAGAAATTTGGGGTTACAAACACAAGGCCTCAACTCACTTCAATTTGAAAAACCCAAACAAGGAATATCTAGTGCCTGGATCCTTATTTGTCTCACAAAACTGAATTGTGAGCTGTGACATTTTCTCCCAAAAGTCTCTTTTGGgacagaacttctggtaatggcaacatgaagagatagatcagcaagtgttcctctaaatagcaatatgaaaactgaacaaaatactaaaaataattatttgaagtcactggaaaac------aagaaaaggcaagcagaaatgtaatagcgctttgatcttgagagactactctattgggtaaaagccgtaaattggtggcctttcctccttacctatgagttcactccaacctcaTAGCAGGTAACTGCAGCCCTAATGGCTCAAGAGGGCAGTTTATAGAGTTAAAAGTCAAAATAAGCTAAAAATGTAAA------------------------AGAC
i manLeu1.NW_012107142v1   C 0 C 0
s cebCap1.NW_016107755v1    1096673 505 -   1771730 ctatgtagggtgtccttctttatcattggGGGTTGTATAAAGTCAGTGATTTCTTTAGAAATTTGGGGTTACAAACACCAGGCCTCATCTTACTTCAATTTGAAAAGCCTGAGCAAGGAATCTCTGGTGCCTGGATCCTTATTTGTCTCACAAGATTGAATTGTGAGCTGTGACATTTTCTCCCAAAAGTCTCTTTCAGgacagaacttccagtaatggcaacatgaagacatagatcagcaagtgttcctctaaatagcaacgtgaaaactggacaaaacactaaaaataaatatttgaagtcactggaaaac----------aaaggcaagcagaaatgtgatagagctttgatcttggaagattactctattgggtagaaactgcaagtttgtggcctttcctccttacctatgagtttgcttcaacctcTCAGCAGATAACTGCAGTACTATTGGCTCAAGAGGGCAGTTTATAGAGTTAAAAGCTCAAGTAAGCCAAAAATGTAAA------------------------AAGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     284979 504 -    486031 ctatgtagggtgtccttctttatcaTCGGGGGTTGTATAAAGTCAGTGATTTCTTTAGAAATTTGGGGTTACAAACACCAGGCCTCATCTTACTTCAATCTGAAAAGCCTGAGCAAGGAATCTCTGGTGCCTGGATCCTTATTTGTCTCACAAGATTGAATTGTGAGCTGTGACATTTTCTCCCAAAAGTCTCTTTCAGgacagaacttccagtaatggcaacatgaagagatagatcagcaagtgttcctctaaatagcagcatgaaaactggacaaaatact-aaaataagtatttgaagtcactggaaaac----------aaaggcaagcagaaatgtgacagagctttgatcttgaaagattactctattgggtagaaactgtaagtttgtggcctttcctccttacctatgagttcgctccaacctctcAGCAGATAACTGCAGTACTAATGGCTCAAGAGGGCAGTTTATAGAGTTAAAAGCTCAAGTAAGCTAAAAATGTAAA------------------------AGGC
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550           528614 85020 +  18854210 I
e calJac3.chr4             30672134   0 + 171630274 C
e nomLeu3.chr1a            75190601   0 + 122973662 C
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=317429.000000
s hg38.chr6_GL000254v2_alt  1725775 65 +   4827813 AATTTTGAAAGAGATCTGCTGAAGAATTCAGATTcaaaatctgaatacaaactatgctcacatcc
s gorGor5.CYUI01015528v1     539136 65 +   2037526 AATTTTGAAAGAGATCTGCTGAAGAATTCAGATTCAAAATCTGAATACAAACTATGCTCACATCC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31097081 65 + 172585720 AATTTTGAAAGAGATCGGCTGAAGAATTCAGATTCAAAATCTGAATACAAACTATGCTCACAtcc
i rheMac8.chr4             C 0 I 4209
s macFas5.chr4             30389147 65 - 170955103 AATTTTGAAAGAGATCTGCTGAAGAATTCAGATTCAAAATCTGAATACAAACTATGCTCACAtcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     643791 65 +   1495729 AATTTTGAAAGAGATCTGCTGAAGAATTCAGATTCAAAATCTGAATACAAACTATGCTCACAtcc
i macNem1.NW_012012100v1   C 0 I 4183
s cerAty1.NW_012002535v1     744355 65 -    863181 AATTTTGAAAGAGATCTGCTGAAGAATTCAGATTCAAAATCTGAATACAAACTATGCTCACAtcc
i cerAty1.NW_012002535v1   C 0 I 4809
s chlSab2.chr17            29880385 65 -  71996105 AATTTTGAAAGAGATCTGCTGAAGAATTCAGATTCAAAATCTGAATACAAACTATGCTCACAtcc
i chlSab2.chr17            C 0 I 4196
s manLeu1.NW_012107142v1     654309 65 -    735854 AATTTTGAAAGAGATCTGCTGAAGAATTCAGATTCAAAATCTGAATACAAACTATGCTCACAtcc
i manLeu1.NW_012107142v1   C 0 I 4122
s calJac3.chr4             30672134 65 + 171630274 GATTTTGAAACAGATCTGCTGAAGAATTCAGATTCAAAATCTGAATACAAACTAGGCCCACATCC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1097178 65 -   1771730 AATTTTGAAACAGATCTGCTGAAGAATTCAGATTCAAAATCTGAATATAAGCTATGCCCACATCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     285483 65 -    486031 AATTTTGAAACAGATCTGCAGAAGAATTCAGATTCAAAATCTGAATACAAACTATGCCCACATCC
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550           528614 85020 +  18854210 I
e nomLeu3.chr1a            75190601  0 + 122973662 C
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=2455.000000
s hg38.chr6_GL000254v2_alt  1725840 3 +   4827813 ctg
s gorGor5.CYUI01015528v1     539201 3 +   2037526 CTG
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             30389212 3 - 170955103 atg
i macFas5.chr4             C 0 I 4195
s calJac3.chr4             30672199 3 + 171630274 TTG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1097243 3 -   1771730 TTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     285548 3 -    486031 TTG
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550           528614 85020 +  18854210 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            75190601 0 + 122973662 C
e panPan2.chr6             31028995 0 + 173848474 C
e panTro5.chr6             30604965 0 + 175400573 C

a score=615899.000000
s hg38.chr6_GL000254v2_alt  1725843 820 +   4827813 gttgaacactaaactccccatgggtgtgggacactcaggggaacctggggaaaaatcagaaagaacctagagtgagGTCTACCCTTGAAAGAGTGAAATAATCCTGGCAATATCTGAAAGTCTGCAGTAACATAGACTGCTTGCATTTGTCAACCTGCATACAACACAGGCAGAAGAAAGCAAAAATCTTACTGGACTGAGGGGTGAAAAGGCAGGATGCAGGA----------------CAATTTAGAGGGGATTCCAGAAGCAAAACAAACACAGAGAAGCTGAATTGCAAAATCTTAGCAGAAATAGCCCCAGTACTtgttagtccatgttgtgttgctata----aatacctgagagtgggtaatttataaagaaaagaggtttatttggctcatggctatataggttgtacaaacatggcaccagcatctcttcagcttctggtgagacctcaggagccttttactcctggtggaaggggaagggggaccaggcatgtcacatggcaaaagaggaacagggtgggaggagccagattcttctaaacaaccaactctctttcaaaataatagagcaggggccggatgtggtggctcatgc-------------ctgta-atcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagttcgagaccagcctggccaatatggtgaaaccccatccttactaaaaatacaaaaattagcttggcatggtggcatgtgcctgtagtcccagctactcaggaggctgaggcagaagaatcacttgaacccaggaggtggaggttgcagtgagccaagatcgcaccactgctctccaggctggg
s gorGor5.CYUI01015528v1     539204 820 +   2037526 GTTGAACACTAAACTCCCCATGGGTGTGGGACACTCAGGGGAACCTGGGGAAAAATCAGAAAGAACCTAGAGTGAGGTCTACCCTTGAAAGAGTGAAATAATCCTGGCAATATCTGAAAGTCTGCAGTAACATAGACTGCTCGCATTTGTCAACCTGCATACAACACAGGCAGAAGAAATCAAAAATCTTACTGGACTGAGGGGTGAAAAGGCAGGATGCAGGA----------------CAATTTAGAGGGGATTCCAGAGACAAAACAAACACAGAGAAGCTGAATTGCAAAATCTTAGCAGAAATAGCCCCAGTACTtgttagtccatgttgtgttgctata----aatacctgagagtgggtaatttataaagaaaagaggtttatttggctcatggctatataggttgtacaaacatggcaccagcatctcttcagcttctggtgagacctcaggagccttttactcctggaggaaggggaggggggaccaggcatgtcacatggcaaaagaggaagagggtgggaggagccagcttcttctaaacaaccaactctctttcaaaataatagagcaggggccagatgtggtggctcatgc-------------ctgta-atcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagttcgagaccagcctggtcaatatggtgaaaccccatccttactaaaaatacaaaaattagcttggcatggtggcatgtgcctgtagtcccagctactcaggaggctgaggcagaagaatcacttgaacccaggaggtggaggttgcagtgagccaagatcgcaccactgctctccaggctggg
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30672202 830 + 171630274 GTTGAACACTTAACTCTCCATGGGTGTGAGACACTCAGGGAAACCTGGGGGAAAATCAGA--GAATCCAGAGGGAGGTCTACCCTTGAAAGAGAGAAATAATCCTGGCGAGATCTGAAAGTCTGCAGTTACATGGACTGCTTGCATTTGTCAACCTGCACACAACACAGGCAGAAGAAAGCAAAAATCTTACTGGACTGAGGGGTGAAAAGGCAGGATGTA-GGCCAACAGAACAGTTGCCAATTTAGAGGGGATTCCGGAGACAAAGCAAACACAGGGAAGCTGAATTCCAAAAT-TGAGTAGAAAGAGCTCCAATACTtgctaatccatgttgtgttgctataaaggaatacctgagact-ggcaatttataaagaagagagatttatttggctcatggatgtataggttgtacaaacatggcaccagcatctctgcagcttctggtgaaacctcaggagccttttacttgtggtggaaggggaatgggaagcaggcatgtcacatggcaaaaaagaaacagggcgagaggagccaggttcttttaaacaaccaactctctttcaaaataatagagcAGGGGTCAGGGGCGGTGGCTCAGGCGGTGAGTGCCCAAGTGCAGatctcagcattttgggggcccaaggtggggggataatgaagtcaggagttccggatcagcctgga----actgtactgttccgtctgtactaaaaatacaaaaattagc------tagtgatgcaggcctgtagttccagctacccgagagact-----agcagagatccttgaaccc-gaaagcagag--tgca-tgagccgagattgcgccacagcattccagcctggg
i calJac3.chr4             C 0 I 5077
s cebCap1.NW_016107755v1    1097246 831 -   1771730 ATTGAACACTTAACTCTCCGTGGGTGTGAGACACTCAGGGGAGCCTGGGGAAAAATCAGAGGGAATCCAGAGGGAGGTCTACCCTTGAAAGAGAGAAATAACCTTGGCAAGATCTGAAAGTCTGCAGTTACACGGACTGCTTGCATTTGTCAACCTGCACACAACACAGGCAGAAGAAAGCAAAAATCTTGCTGGACTGAGGGGTGAAAAGGCAGGATGTAGGGCCAACAGAACAGCTGGCAATTTAGAGGGGATTTCGGAGACAAAGCAAACACAGGGAAGTTGAATTCCAAAAT-TGAGTAGAAATAGCTCCAATACTtgttactccatgttgtgttgctataaaggaatacccgagactgggtaatttataaagaaaagagatttatttggctcatggatgtataggttgtacagacatggcaccagcatctctgcagcttctggtgaaacctcaggagccttttacttgtggtggaaggggaatgggaagcagacatgtcacatggcaaaaaagaaacagggcgagaggagccaggttcttttaaacaactaactctctttcaaaataatagagcAGGggccaggcgtggtggctcaggc-------------ctgta-atctcggcacttcgcggg-ctgaggtgggcggctaatgaggtcaggagttccagaccagcctggccaatatggtgaaaccccatctgtactaaaaatacaaaaattagc------tagtgatgcaggcctgtagtcccagctatccgagagactgaggcagaagaatcgcttgaacccaggaggcagaggttgca-tgagccgagattgcgccactgtactccagtctggg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     285551 830 -    486031 GTTGAACACTTAACTCTCCATGGGTGTGAGACACTCAGGGGAACCTGGGGAAAAATCAGAGAGAATCCAGAGGGAAGTCTACCCTTGAAAGAGAGAAATAATCCTGAAGAGATCCAAAAGTCTGCAGTTACACGGACTGCTTGCATTTGTCAACCTGCACGCAACACAGGCAGAAGAAAGCAAAAATCTTACTGGACTGAGGGGTGAAAAGGCAGGATGTAGGGCCAACAGAGCAGCTGGCAATTTAGAGGGGATTCCGGAGACAAAGCAAACACAGGGAAGCTGAATTCCAAAAT-TGAGTAGAAATAGCTCCAATACTtgttagtccatgttgtgttgctataaaggaatacctgagactgggtaatttataaagaaaagagatttatttggctcatggatgtatacgttgtacaaacatggcaccagcatctcttcagcttctggtgaaaactcaggagccttttacttgtggtggaaggggaatgggaagcaggcatgtcacatggcaaaaaagaaacagggcgagaggagccaggttcttttaaacaaccaactctctttcaaaataatagagcaggggccaggcatggtggctcaggc-------------ctgta-atctcagcactttggggg-ccaaggcgggcggataatgaggtcaggagttccagaccagcctggccaatatagtgaaa-cctgcctgtactaaaaatacaaaaattagc------tagtgatgcaggcctgtagtcacagctacccgagagactgaggcagaacaatcgcttgaatccgggaggcagagtttgca-tgagccgagattgcaccactgtactccagcctggg
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550           528614 85020 +  18854210 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            75190601   0 + 122973662 C
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=3430.000000
s hg38.chr6_GL000254v2_alt  1726663 8 +   4827813 caacagag
s gorGor5.CYUI01015528v1     540024 8 +   2037526 caacagag
i gorGor5.CYUI01015528v1   C 0 C 0
s cebCap1.NW_016107755v1    1098077 8 -   1771730 cgacagag
i cebCap1.NW_016107755v1   C 0 I 5077
s aotNan1.NW_018496901v1     286381 8 -    486031 cgacagac
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550           528614 85020 +  18854210 I
e calJac3.chr4             30673032 5077 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            75190601 0 + 122973662 C
e panPan2.chr6             31028995 0 + 173848474 C
e panTro5.chr6             30604965 0 + 175400573 C

a score=5028.000000
s hg38.chr6_GL000254v2_alt  1726671 28 +   4827813 cgagactctgtctcaaaataataataat
s gorGor5.CYUI01015528v1     540032 28 +   2037526 cgagactctgtctcaaaataataataat
i gorGor5.CYUI01015528v1   C 0 C 0
s aotNan1.NW_018496901v1     286389 27 -    486031 tgagactccgtctaaaaa-attaaaaat
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550           528614 85020 +  18854210 I
e cebCap1.NW_016107755v1    1098085 5077 -   1771730 I
e calJac3.chr4             30673032 5077 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            75190601  0 + 122973662 C
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=3276.000000
s hg38.chr6_GL000254v2_alt  1726699 6 +   4827813 aataat
s gorGor5.CYUI01015528v1     540060 6 +   2037526 aataat
i gorGor5.CYUI01015528v1   C 0 C 0
s cebCap1.NW_016107755v1    1103162 6 -   1771730 aataat
i cebCap1.NW_016107755v1   I 5077 C 0
s aotNan1.NW_018496901v1     286416 6 -    486031 aataat
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550           528614 85020 +  18854210 I
e calJac3.chr4             30673032 5077 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            75190601 0 + 122973662 C
e panPan2.chr6             31028995 0 + 173848474 C
e panTro5.chr6             30604965 0 + 175400573 C

a score=560865.000000
s hg38.chr6_GL000254v2_alt  1726705 723 +   4827813 aataataataataataa---------agcgaagagaacttacttatgactgtggggagggcaccaagccattcatgagggatctacccccatgacccaaacagcttccactaggccccacctgcagcattggggattacatttcaacatgaggtttggcagggacaaat---------------------------attacaaaGATGCAGAGTAGACACCCAGAGCCCCCTGCTGAAAATGCAGCAACTGGATATCGGTaaacagagcagagacatcagctgtagccaactgcaggggtaacagatttcacagttaccagtgcagggaaagttaACCACGTTCACTGAGGGGCAGGGGTGGTGGTGGTGGGAGAATTGCCATCTT------------------------------------------------------------------TAGAGAGATTGTTGTagattccagactctctaaaacaaaacatataatgtccactttatcaaataggatcagacatagaaagaaaagaaaga----aatgtgtgactataataaggagg-aaattaaaaataaatgggtt-tcaatgggtccagatattgaaattatcagcaaactctttaagacagttttgaaaaatatgtggaaagaaatgaaggaaatat--------------catttctaaagagtgaatag--aagtaattgcagcagagaaatgaaaactatagatggtactaagtggaaattctcaaactggatagaaaaataatgacagtgctctggatgaggtcaacagaagttttgagatggcagaataaagaatcagtcagtg
s gorGor5.CYUI01015528v1     540066 730 +   2037526 aataataataataataataatGAAAAAgcgaagagaacttacttatgactgtggggagggcaccaagccattcatgagggatctacccc-atgacccaaacagcttccactaggccccacctgcagcattggggattacatttcaacatgaggtttggcagggacaaat---------------------------atTACACAGATGCAGAGTAGACACCCAGAGCCCCCTGCTGAAAATGCAGCAACTGGATATCGGTaaacagagcagagacatcagctgtagccaactgcaggggtaacagatttcacagttaccagtgctgggaaagttaACCACGTTCACTGAGGG-CAGGGGTGGTGGTGGTGGGAGAATTGCCATCTT------------------------------------------------------------------TAGAGAGATTGTTGTagattccagactctctaaaacaaaacatataatgtccactttgtcaaataggatcagacatagaaagaaaagaaaga----aatgtgtgactataataaggagg-aaattaaaaataaatgggtt-tcagtgggtccagatattgaaattatcagcaaactctttaagacagctttgaaaaatatatggaaagaaatgaaggaaatat--------------catttctaaagagtgaacag--aagtaattgcagcagagaaatgaaaactatagatggtactaagtggaaattctcaaactggatagaaaaataatgacagtgctctggatgaggtcaacagaagttttgagatggcagaataaagaatcagtcagtg
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30678109 826 + 171630274 AAAAATAATAAT-ATGG---------AGCGAAgagaacttactcatgactgt-gggaaggcaccaagccattcatgaggtttctacccccacgacccaaacagctcccactaggacctacctccagcactggggattacatttcaacatgagatttggcaaggacaaatatccaaaccatatcaACCAACCACTAAATTACAAAGATGCAGAGTAGACACCCAGA-CCCCCTGCTGAAAATGCAGCAACTGGATATCGATAAGCAGAGCAGAGACATCAGCTGTAGCCAACTGCAGAGGAAACAGATTTCACAGTTACCAGTTCCAGGAAAATTCACTGCATTCCCTGAGGGGCAGGGGTGGTGGTGATGGGAGAATTGCAATCTTTTTGTTTTTTTTTT---------TTTTGCTCTGCTTTGTCCATGTTGGGAAGAGAATTGCAATCTTTGGAGAGATTGTTTTagattccaggctctctaaaataaaacatataatgtccgctttgtcaaataggatcagacataagaaaaagagaaagaaaataatatgtgactatcataaggaggaaaattgaaaataaatgtattcccaatgggccctgatactgaaattatcaccaaactctttaacacagctttgaaaaatatatggaaagaaatgaagaaaatatattgaaggaaacatcattattaaagagtgaatagataggtaattgaaacagagaaatgaaaactatagaaaatactaaatggaaattctcaaactgaattaaaaaataatgacaatgctctggatgaggtcaacagaatttttgagatggcagaataaagaatcagtcagtg
i calJac3.chr4             I 5077 C 0
s cebCap1.NW_016107755v1    1103168 815 -   1771730 aataataataaC-ATGG---------AGTGAAgagaacttactcttgactgt-gggagggcaccaagccattcatgaggtttctacccccatgacccaagcagctcccactaggactcacctccagcactggggattacatttcaacatgagacttggcaaggacagatatccaaaccatatcaACCAACCACTAAATTACAAAGATGCAGAGTAGACACCCAGA-CCCCCTGCTGAAAATGCAGCAACTGGATATCGAT----AGAGCAGAGACATCAGCTGTAGCCAGCTGCAGAGGTAACAGATTT--CAGTTACCAGTTCCAGGAAAATTAACTGCATTCCCTGAGGGGCAGGGGTGGTGGTGATGGGAGAATTGCAATCTT----TTTTTTTTTT---------TCTCTCTCTGCTTTGTCCATGTTGAGAAGAGAATTGCAATCTTTGGAGAGATTGCTGTagattccagactttctaaaatgaaacatataatgtccactttgtcaaataggatcagacataggaaaaaaagaaagaaaataatatgtgactatcataaggaagaaaattaaaaataaatgtgttcccaatgagccctgatacttaaattatcaccaaactctttaacacagctttgaaaaatatatggaaagaaatgaagaaaatat-ttgaaggagacatcattactaaagagtgaatagacaggtaattggagcagagaaatgaaaactacagaaaatactaagtggaaattctcaaactgaattaaaaagtaatgacagtgctctggatgaggtcaacagaagttttgagatggcagaataaagaatcagtcagtg
i cebCap1.NW_016107755v1   C 0 I 31740
s aotNan1.NW_018496901v1     286422 814 -    486031 ---------aat-atag---------agcaaagagaacttactcatgactgt-gggagggcaccaagccattcatgagggatctacccccatgacccaaacagctcccactaggacccacctccagcactggggattacatttcaacatgagatttggcaaggacagatatccaaaccatatcaACCAATGactaaattacaaagatgcagagtagacacccaga-ccccctgctgaaaatgcagcaactggatattgataaacagagcagagacatcagttgtagccaactgcagaggtaatagatttcacagttaccagttccaggaaaattaACTGCATTCCCTGAGGGGCAGGGGTGGTGGTGATGGGAGAATTGCAATCttttttttttttttttttGCTCTGCTT-----------TGTCCATGTTGAGAAGAGAATTGcaatctttggagagattgttgtagattccaggctctctaaaataaaacacataatgtccactttgtcaaataggatcagacataggaaaaaaagaaagaaaataatgtgtgactgtcataaggaggaaaatgaaaaataaatgggttcccaatgggccctgatattgaaattatcaccaaattctttaacacagc-ttgaaaaacatatggaaagaaatgaagaaaatatattgaaggaaacatcattactaaagagtgaatagataggtaattggagcagcgaaatgaaaactatagaaaatactaagtagaaattctcaaactgaattaaaaaataatgaccgtgctctggatgaggtcaacagaagttttgagatggcagaataaagaatcagtcagtg
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550           528614 85020 +  18854210 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            75190601   0 + 122973662 C
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=63839.000000
s hg38.chr6_GL000254v2_alt  1727428 128 +   4827813 tccttgaatataaatcaacagaaattgtctaatctaaaaataaaaaagagtgaaataagattaaagaaaagtgaagaaaacttcacaaaccctcagaaaatataaagcaggtaaacaggtgaccaatt
s gorGor5.CYUI01015528v1     540796 128 +   2037526 tccttgaatataaatcaacagaaattgtctaatctaaaaataaaaaagagtgaaataagattaaagaaaagtgaagaaaacttcacaaaccctcagaaaatataaagcaggtaaacaggtgaccaatt
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30678935 127 + 171630274 tccttgaatataaatcagtagaaattatttaatctaaaaat-aaaaaaagtaaaataagattaaagaaaaatggagaaaacctcacaaaccctcagaaaatataaaGCAGGTAAACAGGTGACCAATT
i calJac3.chr4             C 0 I 6191
s aotNan1.NW_018496901v1     287236 126 -    486031 tccttgaatacaaatcaatagaaattgtttaatctaaaaat--aaaaaagtgaaataagattaaagaaaaatggagaaaatctcacaaaccctcagaaaatataaagcAGGTAAACAGGTGACCAATT
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550           528614 85020 +  18854210 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            75190601   0 + 122973662 C
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=300.000000
s hg38.chr6_GL000254v2_alt  1727556 1 +   4827813 g
s gorGor5.CYUI01015528v1     540924 1 +   2037526 g
i gorGor5.CYUI01015528v1   C 0 C 0
s aotNan1.NW_018496901v1     287362 1 -    486031 G
i aotNan1.NW_018496901v1   C 0 I 35491
e otoGar3.GL873550           528614 85020 +  18854210 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30679062 6191 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            75190601 0 + 122973662 C
e panPan2.chr6             31028995 0 + 173848474 C
e panTro5.chr6             30604965 0 + 175400573 C

a score=166350.000000
s hg38.chr6_GL000254v2_alt  1727557 1804 +   4827813 gagtcccaaaagaagatagacacaggatcagaaaaaaaattcaaaaaaatctatggctgaaagattcccaaatttgatgaagaattttagcttatagatgtaagacactcatcaaagctgaatacccacatagaaaatcataggtagaGTGGCCATGGCCTTGGC-TGGCCTGAGGGTGTGTCGCTAGCCCTGCTGCATGTGGTGTGGTGCAGGGTGCCAGTGCCTGGTGGGACCAGAGAGCTCCCAGCACAGCCTTTGGGCAGGTGGGACCGCCGATCATTTTAAAATAATtttttattgatttaacttatattttgagttcaggcatacatgtgcaggtttattatataggtaaacttgtatcatggggtttgctgtacagattattttgttacctaggcattaagcctagtacctattagttacttttcctgatcctctccctcctcccagcctccactctctggtaggccccagtgtgtgcagttcccttctatatgtccatgtgttctcatcatttagctcccacttataagtgagaacatgtggtattcggttttcttttcccgcattaatttgctaaggataatggcctccagctccatccatgttccgcaaaggacaagaactcattcttttttatggccacatagtattccatgatgtatatgcactacattttcttaaaagagagcaggagtggctattcttatacaaaacaaaaacagactttaaagcaacaacagtaaaaaaaaaaaaaaa---gacaaagaaggacattatataatgatagaatgataattccaacaagaagatatcacagtcctaaatttatatgcacctaacagtggagctcccagctttataaaacagttactactagacttaagaaatgagatagacagcaagacaataatagcaggggacatcaatactccactgatagctctagacagatcatcaagacacaaagtcaacaaagaaacaatgatcttaaaccatatcctacaacaaatggacttaacagatatttacagaacatttcttcccagtaactgtagaatatacattcttctcatcagcacatggaacattctccaagatagaccatatgatagacctcaacacaagtctaaacaaatttaagaaaactgaaatcctataaagtatcttcacagaccagagtggaataaaactggaaatcaactccaaaatgaaacttaaaaactgtatgagtacatggaaattaaataacctattcttggatgatttttcagttaacaatgaaatcaagatggaaatttaaaaattctctgaaatgaatgataatagtgtcacaagtaatcaaaatctctgggatatagccaaagcagtgaaaataagaaagttcatagcaataagtgctgacttaaaaaagcctgaaagagcccgggcacagtggcttatgcctgtaatcccagcactttgagaggctgaggcaggtggatcagttaaggtcaggggtttgagaccagcctgaccaacatggtgaaaccttgtctctactaaaaatacaaaaattagctaggcgtggtggcacgcgcctttaatcccagctactcaggaggctgaggaaggagaatcacttgaatccaggaggtcgaggttgcagtgagctgagattgcgccactgcactccagcctgggcaacagagtgagacttcatctgggaaggaaaaaaaaaa-tctgaataagcacaaattgaaaacctaatgtcacacctcaaggaactggagagataaaaacaaatgaaacccaaagccagcat
s gorGor5.CYUI01015528v1     540925 1809 +   2037526 gagtcccaaaagaagatagacacaggatcagaaaaaaaattcaaaaaaatctacggctgaaagattcccaaatttgatgaagaattttagcttatagatgtaagacactcatcaaagctgaatacccacatagaaaatcataggtagaGTGGCCATGGCCTTGGCCTGGCCTGAGGGTGTGTCGCTAGCCCTGCTGCATGTGGTGTGGTGCAGGGTGCCAGTGCCTGGTGGGACCAGAGAGCTCCCAGCACAGCCTTTGGGCAGGTGGGACTGCCGATCATTTTAAAATAATtttttattgatttaacttatattttgagttcaggcatacatgtgcaggtttattatataggtaaacttgtatcatggggtttgctgtacagattattttgttacctaggcattaagcctagtacctattagttacttttcctgatcctctccctcctcccagcctccactctctggtaggccctagtgtgtgcagttcccttctatgtgtccatgtgttctcatcatttagctcccacttataagtgagaacatgtggtattcggttttcttttcccgcattaatttgctaaggataatggcctccagctccatccatgttccgcaaaggacatgaactcattcttttttatggccacatagtattccatgatgtatatgcactacattttcttaaaagagagcaggagtggctattcttatacaaaacaaaaacagactttaaagcaacaacagtaaaaaaaaaaaaaaaaaagacaaagaaggacattatataatgatagaatgatcattccaacaagaagatatcacagtcctaaatttatatgcacctaacagtggagctcccagctttataaaacagttactactagacttaagaaatgagatagacagcaagacaataatagcaggggacatcaatactccactgatagctctagacagatcatcaagacacaaagtcaacaaagaaacaatgatcttaaaccatatcctataacaaatggacttaacagatatttacagaacatttcttcccagtaactgtagaatatacattcttctcatcagcacatggaacattctccaagatagaccatatgatagacctcaacacaagtctaaacaaatttaagaaaactgaaatcctataaagtatcttcacagaccagagtggaataaaactggaaatcaactccagaatgaaacttaaaaactgtatgagtacatggaaattaaataatctattcttggatgatttttcagttaacaatgaaatcaagatggaaatttaaaaattctctgaaatgaacgataatagtgtcacaagtaatcaaaatctctgggatatagccaaagcagtgaaaataagaaaattcatagcaataagtgctgacttaaaaaaacctgaaagagcccgggcacggtggcttatgcctgtaatcccagcactttgagaggctgaggcagatggatcagttaaggtcaggggtttgagaccagcctgaccaacatggtgaaaccttgtctctactaaaaatacaaaaattagctgggcgtggtggcacacgcctttaatcccagctactcaggaggctgaggaaggagaatcatttgaatccaggaggtcgaggttgcagtgagctgagattgcaccactgcactccagcctgggcaacagagcgagacttcatctgggaagaaaaaaaaaaaatctgaataagcacaaattgaaaacctaatgtcacacctcaaggaactggagaaataaaaacaaatgaaacccaaagccagcat
i gorGor5.CYUI01015528v1   C 0 C 0
e otoGar3.GL873550           528614 85020 +  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30679062 6191 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            75190601    0 + 122973662 C
e panPan2.chr6             31028995    0 + 173848474 C
e panTro5.chr6             30604965    0 + 175400573 C

a score=678387.000000
s hg38.chr6_GL000254v2_alt  1729361 2696 +   4827813 aaaaaagaaataataaagatcagagcagaaataaatgaaactgaaacaaaaataatacaagagataaatgaaa-aaaaagttgggtctttgaaaaggtaaacaaaatcaatagaccattggtgaggttaaccaagaaaaggagagaagatccaaataagctcaattagaaaacaaactggagatattacaactaataccacagaaacacaaaagttaattcaaggctactatgaacacctttacacacaccagctagaaaatcta---aaaactgataaattcctggaaacatacaaccctcctagactaaatcaggaagaaatagaaatcatgagcagaccaataacaagcagtgagactgaaacagtaataaaaaaaactgtcaacaaaa-----aaaagcctaggaccagatgggttcccagacaaattccattagacattcaaaaaattggtaccaatcctactgaaactattccaaaagatagagaaaaagggaatcctccctaaatcattctatgaagacagtatcaccctaatgccaaaagtaggaaaggacataacaaaaaa-gaaaaatacagacaaatatccccaatgaacatacatgcaaaaatgttcaacacaatactagctaaccaaatccagtagcctatcaaaaaaataatacaccatgttgaagtgggtttcatcccagggatgcagagatggtttaacatatgcaagtcaataaatgtgatacaccacataaacagaattaaaaacaacaatcatatgattatctcaatagatgcagaaaaagcatttgataaaatctagcattgctttatgat-aaaaaccttcaacaaaataggcatagaagggacttacctcaaagtcatgaaagtcatatatgacaaactcacagccaacatcatagtgaatggggaaaagttgaaagcattcctccaaggactgaaacaaggcaaggatgcccacgtgcaccacttctattcaacacagtattgcaagttctagccagagcaatcaagcaagagaaagaaataatgggcatccaaattagaaaagaggaagtcaaactgtccctgttcactgatgatatgatcgtatacctagaaaatactaagactcatccaaaagacccatagatctgataaacaaatttagtaaagtctcaggtcacaaaatcaatgtacacaaatcaggagcattgctatacaccaacaacgaccaagtgag-aatcaaatcaagaactcaatcccttttacaacagctgcaaaaacaaacaacaacaacaacaacaaaaacctccaaaaaaacaacaccccccaaaacctaggaatatacttaaccaaggaggtgaaagatctctgcaaggaaaactaaaaaacactgctgaaagaaatcatagatgacacaaacacatggaaacacatcccatgctcatagatgaatagaatcaatattgtgaaaatgaccatactgcccaaagcaatctatagattcagtgcaattttcatcaaaataccatcatcattcttcacagaactggagcaaacaaccccaaaattcatgtggaaccaaaaaagagcccacgtatccaaagcaatactaagcaaaaataacaaatctggaagcgacccattaacagacttcaagttacactacgaggctatcgttaccaaaacagcatcatactggtataaaataggcacttcagctgggcacggtggctcacgcctgtaatcccagcacttcgggaggtagaggcagacaaatcacctgaggtcaagagttcgagactagcct-agccaacatgataaaacaccatctctactaaaaatacaaaaaaaattatctgggcgtggtggtgggcacctgtaatcccagctatttaggaggctgaggcaggagaatcacttgaacctgggaggcagaggttgcaatgagctgagatcgtgccattgcactccagtctgggcaacaagagtgaaactccatctcaaaataagataaaataaaa------------------------------------------------aataggcgcttagaccaatggaatggaatagacaatccagaaataaagccagatgccaacagctaactgatctttgacaaagcatacaaaaacataaattgggaaaagcacatcctattcaatagagagtgctgggaaaactggcaagccacatatagaatgaaactgtatctccatctctcactttatataaatgtcaactcaaaatggatcaaagacttaaacctaaaacctaaaacctaaaaccataaaaatcttagaagataacatgataacattaaaaaactcttctggacattggcttaggcaaaaaattcatgactaagaccccgaaaacaaacacaacaaaaataaaaataaataaatgagacctggttgaatgataaagcttctacacagcaaaagaaataatcagcagagtaaacagacaacccacacagtaggggaaaatattcacagactatacatccaacaaaggactaatatccagaatctacaaggaacgcaaagaaatcagcaag--aaaaaaacaaataatcccatcaaaaactgggcaaaggacatgaattgacagttctcaaaagaagatatacaaatagccaacaatcatgaaaaattgctcaagataactaatcatcagggaaatgcaaattataagtacaagataccaccttactcctgcaaaaa
s gorGor5.CYUI01015528v1     542734 2735 +   2037526 aaaaaagaaataataaagatcagagcagaactaaatgaaactgaaacaaaaataatacaagagataaatgaaa-aaaaagttgggtctttgaaaaggtaaacaaaatcaatagaccattggtgaggttaaccaagaaaaggagagaagatccaaataagctcaattagaaaacaaactggagatattacaactaataccacagaaacacaaaagttaattcaaggctactatgaacacctttacacacaccagctagaaaatcta---aaaactgataaattcctggaaacatacaaccctcctagactaaatcaggaagaaatagaaatcatgagcagaccaataacaagcagtgagactgaaacagtaataaaaaaaactgtcaacaaaa-----aaaagcctaggaccagatgggttcccagacaaattccattagacattcaaaaaattcgtaccaatcctactgaaactattccaaaagatagagaaaaagggaatcctccctaaatcattctgtgaagacagtatcaccctaatgccaaaagtaggaaaggacataacaaaaaaagaaaaatacagaccaatatccccaatgaacatacatgcaaaaatgttcaacacaatactagctaaccaaatccagtagcctatcaaaaaaataatacaccatgttgaagtgggtttcatcccagggatgcagagatggtttaacat--gcaagtcaataaatgtgatacaccacataaacagaattaaaaacaacaatcatatgattatctcaatagatgcagaaaaagcatttgataaaatctagcattgctttatgat-aaaaaccttcagcaaaataggcatagaagggacttacctcaaagtcatgaaagtcatatatgacaaactcacagccaacatcatagtgaatggggaaaagttgaaagcattccttcaaggactgaaacaaggcaaggatgcccacgtgtaccacttctattcaacatagtattgcaagttctagccagaacaatcaagcaagagaaagaaataatgggcatccaaattagaaa-gaggaagtcaaactgtccctgttcactgaagatatgat-gtatacctagaaaatactaagactcatccaaaagacccatagatctgataaacaaatttagtaaagtctcaggtcacaaaatcaatgtacacaaatcaggagcattgctatacaccaacaacgaccaagtgag-aatcaaatcaagaactcaatcccttttacaacggctgcaaaaacaaaaaacaacaacaacaacaaaaacctccaaaaaaacaacaccccccaaaacctaggaatatacttaaccaaggaggtgaaagatctctgcaaggaaaactaaaaaacactgctgaaagaaatcatagatgacacaaacacatggaaacacatcccatgctcatagatgaatagaatcaatattgtgaaaatgaccatactgcccaaagcaatctatagattcagtgcaattttcatcaaaataccatcatcattcttcacagaactggagcaaacaacctcaaaattcatatggaaccaaaaaagagcccacgtatccaaagcaatactaagcaaaaataacaaatctggaagcgtcccattaacagacttcaagttacactacgaggctatcgttaccaaaacagcatcatactggtataaaataggcacttcagctgggcacggtggctcacgcctgtaatcccagcacttcgggaggtagaggcggacaaatcacctgaggtcaagagttcgagactagccttggccaacatgataaaacaccatctctactaaaaatacaaaaaaaattagctgggcgtggtggtgggcgcctgtaatcccagctattcgggaggctgaggcaggagaatcagttgaacctgggaggcagaggttgcagtgagctgagatcatgccattgcactccagtctgggcaacaagagtgaaactccatctcaaaataaaataaaataaaataaaaaaaaaaaataaaataaaataaaataaaataaaataaaataaaaaacaggcacttagaccaatggaatggaatagacaatccagaaataaagccagatgccaacagctaactgatctttgacaaagcatacaaaaacataaattgggaaaagcacatcctattcaatagagagtgctgggaaaactggcaagccacatatagaatgaaactgtatctccatctctcactttatataaatgtcaactcaaaatggatcaaagacttaaacctaaaacctaaaacc-------ataaaaatcctagaagataacatgataacattaaaaaactcttctggacattggcttaggcaaaaaattcatgactaagaccccgaaaacaaacacaacaaaaataaaaataaataaatgagacctggttgaatgataaagcttctacacagcaaaagaaataatcagcagagtaaacagacaacccacacagtaggggaaaatattcacagactatacatccaacaaaggactaatatccagaatctacaaggaacgcaaagaaatcagcaag--aaaaaaacaaataatcccatcaaaaactgggcaaaggacatgaattgacagttctcaaaagaagatatacaaatagccaacaatcatgaaaaattgctcaagataactaatcatcagggaaatgcaaattataagtacaagataccaccttactcctgcaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s colAng1.NW_012115577v1     531360 2662 -   1829203 aaaaaagaaataacaaagatcagagcagaacaaaatgaaactgaagcaaaaataatataagagataaatgaaacaaaaatctgggtgtttgtaaagttaaacaaaattgatagaccattggtgaggttaaccacaaaaagcagagaagatccaaataagctcaattagaaaataagctggagatattacaactaataccacagaaacacaaaag-taatttaaggctactaggaacacctttacatacaccagctagaaaatctagagaaaatgtataaattcctggaaacatacaaccctcctagactaaatcaggaagaaacagaaatcttgaacagactgataacaagcagtgagactgaagcagtaataaaaaaaattgtcaacaacaacaataaaagtccaggaccagatgggttcgcagacaaatttcattagacattcaaaaaattggtaccaatcctactgaaactattccaaaagatagaaaaaaagggaatcctccctacatcattctatgaagccagtatcaccctaatgccaaaagtaggaaaggacataacaaaaaaagaaaaatacagaccaatatccccaatgaacatagatgcaaaaatcttcaacaaaatactagctaaccaaatccagtagcctatcaaaaaaataatacatcatgatgaagtaggtttcatcccagggatgcagggatggtttaacatatgcaagtcaataaatgtgatacaccacataaacagaattaaaaacaaatatcatatgattatctcaatagatgcagaaaaagcatttgataaaatccagcattgttttatgataaaaaaccttcaaaaaaataggcctagaagggacgtacctcaaagtcatgaaagtcatatatgacaaactcacagccaacatcatagtgaatggggaaaagttgaaagcattcctccgaggactgaaacaagacaaggatgtccatgtgcaccacttctattcaacatagtactgaaagtcctagccggaaca--taggcaagagaaagaaataatgggcatccaaattagaaaagaggaagtcaaactgtccctgttcactgaggatatgatcgtatagctaaaaaatactaagactcatccaaaaggcccctagatctgataaacaaatttggtaaagtctcaggttacaaaatcaatatacacaaatcaggagcattgctatacaccaacaacgaccaagtgagaaatcaaatcaagaactcaatcccttttacaacagctgcaaaaacaaaaagcaacaacaa----aaaaacctccgaaaaaacaacatcccccaaaacctgggaatatacttaaccaagaaggtgaaagatacctacaaggaaaacta-----------------aaatcatagatgacacaaacacatggaaacacatcccatgctcatagatgaatagaatcaatattgtaaaaatgatcatactgcccaaagcaatctatacattcagtgcaattttcatcaaaataccattgtcattcttcacagaactggagcaaacaaccccaaaattcatatggaatcaaaaaagagtccacatatccaaagcaatactaagcaaaagtaacaaatctggaagcgtcacattaacggacttcaagttatactacaaggctatcgttaccaaagcagcatcgtactggtataaaataggcacttcagctgggcacggtggctcacgcctgtaatcccagcactttgggaggtagaggcggacaaatcacctgaggtcaagagttcaagactagcct-ggccaacatgatgaaacaccatctctactaaaaatac--agaaaattagctaggcatggtgatggacacctgtaatcccagctattcgggaggctgaggtaggagaatcacttgaacctgggaggcagaggttgcagtgagtcgagatggtgccattgcactccagtctgggcaacgagagcaaaactccatctcaaaataaaataa-------------------------------------------------------aataggcacttagaccaatggaatggaatagacaatccagaaataaagccagatgctaacagctaacggatctttgacaaagcatacaaaaacacaaattgggaaaagcacatcctattcaatggatggtgctgggaacactggcaagccacatgtagaatgaaactatatctccatctctcacttcgtataaatgtcaactcaaaatggatcaaagacttaaacctaagacctaaaacc-------ataaaaatcctagaa--------gataacatttaaaaacccttctggacatttgcttaagcaaagaattcatgactaagaccccaaaagcaaacacaacaaaaataaaaataaataaatgagacctggttgaatgataaagcttctgcacagcaaaagaaataattagcagagtaaacagacaacccacacagtaggggaaaatattcacagtccatacatccaacaagggactaatatccagaatctacaaggaacgcaaagaaatcagcgagaaaaaaaaacaaataatcccatcaaaaagtgggcaaaggacatgaattgacatttctcaaaagaagatatacaaacagccaacaaatatgaaaaattgctcaagatcactaatcatcagggaaatggaaattataagtacaagataccaccttcctcctgcaaaaa
i colAng1.NW_012115577v1   N 0 I 47
e otoGar3.GL873550           528614 85020 +  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30679062 6191 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            75190601    0 + 122973662 C
e panPan2.chr6             31028995    0 + 173848474 C
e panTro5.chr6             30604965    0 + 175400573 C

a score=1045.000000
s hg38.chr6_GL000254v2_alt  1732057 21 +   4827813 tt---------aaaaaatttttaaaaacca
s gorGor5.CYUI01015528v1     545469 30 +   2037526 ttgccataattaaaaaattttttaaaacca
i gorGor5.CYUI01015528v1   C 0 C 0
e otoGar3.GL873550           528614 85020 +  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30679062 6191 + 171630274 I
e colAng1.NW_012115577v1     534022 47 -   1829203 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            75190601  0 + 122973662 C
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=286730.000000
s hg38.chr6_GL000254v2_alt  1732078 1120 +   4827813 cagtagatgtttgtgtggatgtggtgaaaagggaacacttttgcactgctggtgggaatgtagattagtaaaaccactttggaaagcagtatggacattatttaaagaactgcaagtagatctaccattcaatccagcaatcccactgctggatatctacccaaag-----gaagtcattatatgaaaacgacacatgcacgtgcatgtttacagcagcacacttcacgattgcaatgacatgaaaacaaagtaagtgtccatcgaccaacaagtggacaaagaaaatgtggtatatgtacaccatggagtattacttagccataacaaggaacaaaataatgtgttttgcaacaacctagatggagatggaggccattattctaagtgaggtaactcaggaatggaaaaccaaatactgtatgttctcacttataagtgggagctaagctaggaggatgcaaagacatatagagcgatataatggactttggggactcaagggacaggctgagaggggagt--gagataaaagactacatattgggtacagtgtatattgcttgggtgacaggtgcactaaagtctcagaattcaccactaaagaactcatccattaaaccaaaacccacctgtaccccaaaaaactattgaaataaaataaaacttcatagggcaaacaacaacaaaaacaacaacaacaaagaaaataaataaatcatacaaaaaatatttaagatctctgaaatccaagacactagaaatcaagagacactgtggaaagagtacatagaagacctaaataaatagatcccctgttcatggggagcaagatttaacattgttaaaatgcaacactccccaaattaacccagagatttaaaaaaaaactaacaaaattctaggaggctttttgatagaaatttatgagctgatttacaaatttatatgaaaacataaaaggtctagaataactcatgcaatttATTTTTTA-AAAATTTTAGAGAAAGAGTCTTTCTATATTACCCCATGTTGgcttctaacttctgggctcaagggatccatccacctcagcccccaggtagctgagactacagtcatgcactaccatgtgcagctaatttttca
s gorGor5.CYUI01015528v1     545499 1120 +   2037526 cagtagatgtttgtgtggatgtggtgaaaagggaacatttttgcactgctggtgggaatgtagattagtaaaaccactttggaaagcagtatggacattatttaaagaactgcaagtagatctaccattcaatccagcaatcccactgctggatatctacccaaag-----gaagtcattatatgaaaacgacacatgcacgtgcatgtttacagcagcacacttcacgattgcaatgacatgaaaacaaagtaagtgtccatcggccaacaagtggacaaagaaaatgtggtatatgtacaccatggagtattacttagccataacaaggaacaaaataatgtgttttgcaacaacctagatggagatggaggccattattctaagtgaggtaactcaggaatggaaaaccaaatactgtatgttctcacttataagtgggagctaagctaggaggatgcaaagacacatagagcgatataatggactttggggactcaagggacaggctgagaggggagt--gagataaaagactacatattgggtacagtgtatattgcttgggtgacaggtgcactaaagtctcagaattcaccactaaagaactcatccattaaaccaaaacccacctgtaccccaaaaaactattgaaataaaataaaacttcatagggcaaacaacaacaaaaacaacaacaacaaagaaaataaataaatcatacaaaaaatatttaagatctctgaaatccaagacactagaaatcaagagacactgtggaaagagtacatagaagacctaaataaatatatcccctgttcatggggagcaagatttaacattgttaaaatgcaacactccccaaattaatccagagatttaaaaaaaa-ctaacaaaattctaggaggctttttgatagaaatttatgagctgatttacaaatttatatgaaaacataaaaggtctagaataactcatgcaatttATTTTTTTTAAAATTTTAGAGAAAGAGTCTTCCTATATTACCCCAGGTTGgcttctaacttctgggctcaagggatccatccacctcagcccccaggtagctgagactacagtcatgcactaccatgtgcagctaatttttca
i gorGor5.CYUI01015528v1   C 0 C 0
s colAng1.NW_012115577v1     534069 1122 -   1829203 cggtagatgttggtgtggatatggtgaaaagggaatactgttgcactgctggtgagaatgtaaattagtaaaaccactgtggaaagcagtatggacattctttaaagaactaaaactagatctaccattcaatccagcaatcccactcctggatatctacccgaaggaaaagaagtcattctatgaaaatgacacatgcacatgcatgtttacagcagcccacttcacaattgcaatgacatgaaaccaaactaagtgtccatcgaccaacaagtgaacaaagaaaatgtggtgtatgtacaccatggagtatcacttagccatagcaaggaacaaaataatgtcttttgcaacaacttggatggagatggaggccattattctaagtgaggtaactcaggaatagaaaaccaaatactgtatgttctcaattataagtaagagctaagctatgaggatgcaaagacatatagagcgatataatggac-ttggggactcaaggggcaggctgagaggggagtgagagataaaagactacatgctgggcacagtgtatattgcttgggtgacaggtgcactaaaatctcaggattcaccactaaagaactcatccattaaaccaaaacccacctgtacccccaaaaactattgaaataaaataaaacttcata-ggcaaacaacaacaataa-aacaacaacatggaaaataaataaatcatacaaaaaatacttaagatctccgaaatccaagacactagaaatcaagagacactgtggaaagagcacatagaagacctaaataaatatatcccctgttcatggggagcaagatttaacattattaaaatgcaacactccccaaagtgatacagagatttaaaaaaa--ctaacaaaactctaggagattttttgatagaaatttatgcgctgatttacaaatttatatgaaaacataaaagatctagaataactcatgcaatttATCTTTTT-AAAATTTTAGAGAAAAAGTCTTCCCATATTGCCCCAGGTTGgcctctaacttctgggctcaagggatccatccaccttagcccccaggtagctgagcctacagtcatgcaccaccatgtgcagctcatttttca
i colAng1.NW_012115577v1   I 47 C 0
e otoGar3.GL873550           528614 85020 +  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30679062 6191 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            75190601    0 + 122973662 C
e panPan2.chr6             31028995    0 + 173848474 C
e panTro5.chr6             30604965    0 + 175400573 C

a score=302607.000000
s hg38.chr6_GL000254v2_alt  1733198 745 +   4827813 ttttttttcaggacaag---ttttgctatgttg-tccgggttagtcttgaactcctgggctcaaggtgtcctcccatctcagtctcttgagtagctgagactacaggcatgTTATCATAGTCAGTACAATTTAAGTAATTTCTAAAAAGATGAACAAAGTTATAGGAGTTATTTTGACTAAAAAAGCTGAGATAATTTATTATGTTAATAAATAttcttgtacaattacacctattaattacttttaaaatttctgcttcacatctctgcaaccttgggcttagtggatttcccaggaaagaaatgcttccaccaAATAAGAACCTcagctggccattttatatttccataaaatatagtggtatgagggttctaatttctgcttatctttcctaacatttattttcatttt--aaaaaaattattattatagccatattattgtggtttaatttgcatttctttaatggctaatgatgttgagtatcttttcctgtgtatattggcggtttatgtatcttctttgaagaaatgacttttcaatttctttgcccattttgtaatgggattatttgtcattttgttattgatgtttaaagggttctttgtgtatccaaacacttgacccatatgagatatgtaataggcaaatattttctgccattgtatggattg-ccttttcactgtattgatagtgttctctgatgcataaaag-ttttggtttgatgaagttcaa--tttatctattCGACT
s gorGor5.CYUI01015528v1     546619 743 +   2037526 ttttttttcaggacaag---ttttgctatgttg-tccgggttagtcttgaactcctgggctcaaggtgtcctcccatctcagtctcttgagtagctgagactacaggcatgTTATCATAGTCAGTACAATTTAAGTAATTTTTAAAAAGATGAACAAAGTTATAGGAGTTATTTTGACTAAAAAAGCTGAGATGATTTATTATGTTAATAAATATTCTTGTACAATTACACCTATTAATTACTTTTaaaattt-tgcttcacatctctgcaaccttgggcttagtggatttcccaggagagaaatgcttccaccaAATAAGAACCTcagctggccattttatatttccataaaatatagtggtatgagggttctaatttctgcttatctttcctagcatttattttcatttt--aaaaaaattattattatagccatattattgtggtttaatttgcatttctttaatggctaatgatgttgagtatcttttcctgtgtatattggcagtttatgtatcttctttgaagaaatgacttttcaatttctttgcccattttgtaatgggattatttgtcattttgttattgatgtttaaagggttctttgtgtatccaa-cactcgacccatatgagatatgtaataggcaaatattttctgccattgtatggattg-ccttttcactgtattgacagtgttctctgatgcataaaag-ttttggtttgatgaagttcaa--tttatctattCGACT
i gorGor5.CYUI01015528v1   C 0 C 0
s colAng1.NW_012115577v1     535191 748 -   1829203 ttttttttcaagactgg---ttttgctatgttg-tccgggttagccttgaactcctgggctcaaggtgtcctcccatctcagtcttttgagtagctgagactacaagcatgTTATCATAATCAGCACAACTTAAGTAATTTTTTAAAAGATGAACAAAGTTATAGGAGTTATTTTGACTAAAAAAGCTGAGATAATTGATTATGTTAATAAATAttcttgtaccattacacctgttaattacttttaaaaattctgcttcacatccctgcaatcttgggtttagtgggtttcccaggagagaaatgcttccaccaAATAAGAACCTCAgctggccattttatatttccataaaataaagtggtatgagggttctaatttctgcttatctttgctaacatttattttcatttttataaaaaattattattatatccatattactgtggcttaatttgcatttctttaatggctaatgatgtcgagtatcttttcctgtgtatattggctgtttatgtatcttctttgaagaaatgtttattcaattcctttacccattttgtaatgagattatttgtccttttgttattaatgtgtaaagggttctttatgtatctgaatacttgacccatatgagatatgtaataggcaaatattttctgcttttgtatggattgtccttttcgatgtattgatagtgttctttgatgcacaaaag-ttttggtttgatgaagttcaa--tttatccattCGACT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128         25237310 726 -  25516302 ttttttttaaagataagagtccttgctatattgccccagactggccttcaac----------------tcttcccacctcagcctttgaagtagctgagactaccagtgtgtTATAATATGCTGTACAATTTATGGAATGTATGAAAAGATGAATAAACTAATAAGAATCATTTTCACTAAAAAAGCTGAGATAATTTATTATG-TAATAAATGTTCTTGAAGAATTACACCTATTAATTACTTAAAATTTTTCTGTTTCCCATCCCTGATATCTTGGGCTTAGTGGCTTTCCCAACAGAGGAACGCTTCCACTAAGTAAGAACCTcagctggccattttatatttctat-aaacataatgggatgaagctactaatttctccacattctttctaacatttgct---attta-aaaaaaagttattaccatagctgtatcattgtagtttactttgcatttctgaaatggctaatgttgctgatcatattttcctatgtttcttggctgtttatgtctcttctttgaggaaatgtctgtacaagtcctttgcccattttgtgattggattatttgcc-ttttgctattgaaatgtaaagatttctttatgtatctgaatactggcccc-----tgatgtgtaattggcaaatattttctgccatttgatgaattg-tcttttcactgtactgataatgtctttcgatgcacacgagtttttaatgtcctgaagttcaatttttttctatttGGAT
i saiBol1.JH378128         N 0 C 0
e otoGar3.GL873550           528614 85020 +  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30679062 6191 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            75190601   0 + 122973662 C
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=4285.000000
s hg38.chr6_GL000254v2_alt  1733943 10 +   4827813 CTATAAC--CAT
s gorGor5.CYUI01015528v1     547362 10 +   2037526 CTATAAC--CAT
i gorGor5.CYUI01015528v1   C 0 C 0
s colAng1.NW_012115577v1     535939 10 -   1829203 CTATAAC--CAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30685253 12 + 171630274 CTATGACTATAG
i calJac3.chr4             I 6191 C 0
s saiBol1.JH378128         25238036 10 -  25516302 CTGTAAT--CAG
i saiBol1.JH378128         C 0 C 0
e otoGar3.GL873550           528614 85020 +  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            75190601  0 + 122973662 C
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=220204.000000
s hg38.chr6_GL000254v2_alt  1733953 410 +   4827813 ACCCAGGGCAGGATCAGGAAAA-CAAGGACAGGAGACGTGCAGGGGCTGGACCACCTTCCCTCTTGGGTGACTGGAGGTCTGTCCTCAGCA--GTCTTTCCCTTCTGACCTATGACTTCTGGGAATCGGGTCCCCATCTCTAGAATCATCAAGGTGATG-ACTGGTCCTTTATTTTCACAAGTGCTTTACGTTACAGAAATT-TCAGCAAGCAGGGACTATGACTGGGTAAGCAtgagtgtttgtgttt----------------------------------------tgtgtgtgtgtgtctgtgtgtgtggtgGGGGGCGGGGTATGTGGGG-------TACATTTTATTA-------TCAATGCAGAATGGAACATGACAATGCAGATCC-------CAGTCCTTACATACCAGAGCTCTTCTTCCGCTTCATCGCAAGTGTAGCCACCACAGCTCAAGTAACCACATCTCC
s gorGor5.CYUI01015528v1     547372 409 +   2037526 ACCCAGGGCAGGATCAGGAAAA-CAAGGACAGGAGACGTGCAGGGGCTGGACCACCTTCCCTCTTGGGTGACTGGAGGTCTGTCCTCAGCA--GTCTTTCCCCTCTGACCTATGACTTCTGGGAATTGGGTCCCCATCTCTAGAATCATCA-GGTGATG-ACTGGTCCTTTATTTTCACAAGTGCTTTACGTTACAGAAATT-TCAGCAAGCAGGGACTATGACTGGGTAAGCAtgagtgtttgtgttt----------------------------------------tgtgtgtgtgtgtctgtgtgtgtggtgGGGGGCGGGGTATGTGGGG-------TACATTTTATTA-------TCAATGCAGAATGGAACATGACAATGCAGATCC-------CAGTCCTTACATACCAGAGCTCTTCTTCCGCTTCATCGCAAGTGTAGCCACCACAGCTCAAGTAACCACATCTCC
i gorGor5.CYUI01015528v1   C 0 C 0
s colAng1.NW_012115577v1     535949 407 -   1829203 ACCTAGGGCAGGATCATG---A-CAAGGACAGGAGATGTGCAGGGGCTGGACAACCTGCCCTCTTGGGTGACTGGAGGTCTGTCTTCAGCA--GTCTTTCCTCTCTGACCTATGACTTCTGGGAATTGGGTCCCCATCTCTAGAATCATCAAGGTGATG-ACTGGTCCTTTATTTTCACAAGTGCTTTACATTACAGAAAAT-TTAGCAAACAGGGACTATGACTGGGTAAGCAtgagtgtttgtgttg----------------------------------------tgtgtgtctgtgtctgtgtgtgtgATGGGGAGCGGGGTATGTGTGG-------TACATTTTATTA-------TTAAGGCAGAATGGAATATGACAATGCAAATCC-------CAGTCCTTACATACCAGAGTTCTTCTTCCTCTACATCAGAAGTGTAGCCACCACAGTTCAAGGAGCCACATCTCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30685265 385 + 171630274 ACCCAGGGCAGGATCAGGAAACATGAGGAAAGCAGGTGT--GGGTCCTGGACCAATTGCCCTCCT---------GAGATCTGTCCTCAGCAGGGACTTTCCTCTGTGACCCGTGACTACTGGG-ATCAGGT-CCCATCACCACAATCATCAAGGTGATACATCTGTCCTTCACTGTCAAACATGTTTCACAAAAGAATAAGTGCTGGCACACAGGGCCCC----------AGGCTGGGT--------------------------------------------------CGGCCATGTGTGGATG-----------GTGCTTCCCAGCAACAAGGCAGGACACACTTCTATCTGAG-GCTTGAAACCCCCAGTGGGACAAGAAAATACAGACCCCACCCCTCACCCCTTCCCTACCTGAGCTCTTCCTCC---ACATCACAG---CAGTGACCACAGCTACAGTGACCACAGCTCC
i calJac3.chr4             C 0 I 23561
s saiBol1.JH378128         25238046 440 -  25516302 ACCCAGGGCATGATCAGAAAAT-CAAGAACAGGAGATATACAGGGGCTAGACCACCTGCCCTCTTGGGTGGCTGGAGGTCTCTCCTCAGCAGAGTCCTTCTCCTCTGACCTATGACTGCTGGGAATCAGGT-CCCATCTCTAGAATCATCAAGGTGATGCA----TGCTTTGTCTTCACCAGTGCTTTACATTACAGAAAGT-TTAGCATACAGGGACCATG--------AGCATGAgtgtttgtgtgtttgtgctctctctctctctctctctctctctctctctctctgtctgtgtgtgtgtgtgtgtgtgtgtgtgCTTTGTGTATATATGG-------TACTTTTCATTAAG-----GAGGCCCTAA--GGAACAAGAAAATGCAAACTC-------CACCCCTTGCATACCAGAGCTCTTCCTCCTCTACATCACAAGGTTAACCACCACAGCTCCAGTGTCCACAGCTCC
i saiBol1.JH378128         C 0 C 0
s otoGar3.GL873550         18191512 374 -  18854210 ACCCAGGGCAGGATCAGG-----ATAGAAGAGGAAATG---AGTGATTTGACTAACTGCCCTCCT--------AGAGGTCTGTTCTGAGCAAGGTCCTTCCCCTCCGACCTGTGACTGCTGGGAATGAGGTCCCCATCACCACAATCATCAGAATTCAC-CTCTGCCTTTCACTGTGACATA-GTTTTACAAAACACTAAGTGTTGGCACATAGGACCCCTGGC-----------------------------------------------------------------TGGGTGTATGTGGAAG-GTATTTCCTAGTAATGG-----TGCAGGG-------CACACTTCTGCCTGGGCTTAAAACCCCTGTTGGGGCAAGAAAACCCATATCCTGCCCCTTACCCCTTCCTTACCTGAACTCTTTGCCC---TCATTATAG---TGGTGAACACAATTCCAGTGAGCACAGCACC
i otoGar3.GL873550         n 85020 C 0
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            75190601   0 + 122973662 C
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=2707.000000
s hg38.chr6_GL000254v2_alt  1734363 6 +   4827813 AATGAA
s gorGor5.CYUI01015528v1     547781 6 +   2037526 AATGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s colAng1.NW_012115577v1     536356 6 -   1829203 AGTGAA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128         25238486 6 -  25516302 AAAGAG
i saiBol1.JH378128         C 0 I 326
s otoGar3.GL873550         18191886 6 -  18854210 AAGGGA
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            75190601 0 + 122973662 C
e panPan2.chr6             31028995 0 + 173848474 C
e panTro5.chr6             30604965 0 + 175400573 C

a score=1365.000000
s hg38.chr6_GL000254v2_alt  1734369 1 +   4827813 A
s gorGor5.CYUI01015528v1     547787 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            47778957 1 - 122973662 A
i nomLeu3.chr1a            n 0 C 0
s colAng1.NW_012115577v1     536362 1 -   1829203 A
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128         25238818 1 -  25516302 a
i saiBol1.JH378128         I 326 C 0
s otoGar3.GL873550         18191892 1 -  18854210 A
i otoGar3.GL873550         C 0 I 8087
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e panPan2.chr6             31028995 0 + 173848474 C
e panTro5.chr6             30604965 0 + 175400573 C

a score=73148.000000
s hg38.chr6_GL000254v2_alt  1734370 155 +   4827813 TTTGATAGTGCATA-CCAGAGTA-TCTTAGTTTTTAATCTCCCTAAAAGTATACCATGTCACTCATAGATTGA---ATATAT-CAAAGTTGTCTTCATATGGAAGCCATG-AATTTGTCTATATGGGTCTCAGACATATCATTGAAATATAGCATGCCCAAG
s gorGor5.CYUI01015528v1     547788 116 +   2037526 TTTGATAGTGCATA-CCAGAGTA-TCTTAGTTTTTAATCTCCCTAAAAGTATACCGTGTCACTCATAGATTGA---GTATAT-CAAAGTTGTCTTCATATGGAAGCCATGGAATTTGTCTAT----------------------------------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            47778958 158 - 122973662 TTTAACAGTGCATATCTAGAGTGCTCATAGTGTTCAATCTTCCCCAAAATATATGGTGGGACTCTCAGATTGA---ATATATATTAAATTATCTTCATCGGGAAGTCATG-GATTTGTCCACATGGGCCTTAGACACGTCCTTAAAACACAGCAAGCCCAAA
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115577v1     536363 155 -   1829203 TTTGACAGGGCATA-CCAGAGTA-TCTTAGTTTTTAATCTCCCTGAAAGTATACCGTGTGACTCATGGATTGA---ATATAT-CAAAATTGTCTTCATATGGAAACCATG-AATTTGTCTATATGGGTCTCAGACATATCATTAAAATATAGCATGCCCAAG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128         25238819 153 -  25516302 tctaacagtgcaTA-CTAGAGTG-TTC---TTTTTAATCTCTCCAAAGGTACACTTTGTGACATACCGATTGATATATATAT-CAAAGTTACCTTCATAAGGGAGTCATG-GATTTGTCTGT--GGGTCTTAGATATAACATTAAAATACAGCATGCTCAAG
i saiBol1.JH378128         C 0 C 0
e otoGar3.GL873550         18191893 8087 -  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=5741.000000
s hg38.chr6_GL000254v2_alt  1734525 10 +   4827813 AAAGTTTAAT
s nomLeu3.chr1a            47779116 10 - 122973662 AATGTCTAAT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115577v1     536518 10 -   1829203 AAAGTTTAAT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128         25238972 10 -  25516302 AAAGTATAAT
i saiBol1.JH378128         C 0 I 174
s otoGar3.GL873550         18199980 10 -  18854210 AAAATTTATT
i otoGar3.GL873550         I 8087 C 0
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e gorGor5.CYUI01015528v1     547904  0 +   2037526 C
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=500959.000000
s hg38.chr6_GL000254v2_alt  1734535 754 +   4827813 TAATGTGTATTTGAACAACTACAGTGTATAGACATCAACCAAAATATGAATTATCAGTTCATAGTATCAAGTCTTCATAAATGCACATCACTGTTG----CCAATCCATGTCTATATTTCACTGGAAATCTGGCA-TAATATTTTCTTTACTTTGGTGAATG-TAAGAAGGCAAATAAGTCTTGAGTACTCATCCTAAGTTG---TATTTATTGGATACCACATATATTAAGTACCCTACAGACCCAGTAGACACATTTCAAAAATTATAAAATAA-----TTAAACCTTACAATCCCATCGCATTAGTAATCTTTACTT-------TTCCACAACTTG-----AAACAATTCTATGTCCTTCAACTCTCGGA--CCCCTTTCCTCATCGTCTCTTC----------CTAGGTCAAA-TATGTATGAAGTTTTCACAACTCTGGAGTGCA----GATGTTCTAAGCATGACCAAAATGTGAAAAGTGATGAAGAATGATGATAATCATTTTGACTACTTACAAATTAAAAAAAATCTCTTTGGCATCCACAAACACAGAAATGTACAAACACTTTCCCATAATCAACCTCAAAGACATGT-AAACAGTTGATGGACAAAATAGTAACAATGtgttaatacccttcagcccaaggccacctggagcacatct--gtgggtgaagaagttgggtttattactcactgcagtgggagggagaatgcacaccttggataactaccgagtatcttggtaagtgccttttagatagagcctattataatatttgggcttCAGCTGG
s gorGor5.CYUI01015528v1     547904 754 +   2037526 TAATGTGTATTTGAACAACTACAGTGTATAGACATCAACCAAAATATGAATTATCAGTTCATAGTATCAAGTCTTCATAAATGCACATCACTGTTG----CCAATCCATGTCTGTATTTCACTGGAAATCTGGCA-TAATATTTTCTTTACTTTGGTGAATG-TAAGAAGGCAAATAAGTCTTGAGTACTCATCCTAAGTTG---TATTTATTGGATACCACATATATTAAGTACCCTACAGACCCAGCAGACACATTTCAAAAATTATAAAATAA-----TTAAACCTTACAATCCCATCGCATTAGTAATCTTTACTT-------TTCCACAACTTG-----AAACAATTCTATATCCTTCAACTCTCGGA--CCCCTTTCCTCATCGTCTCTTC----------CTAGGTCAAA-TATGTATGAAGTTTTCACAACTCTGGAGTGCA----GATGTTCTAAGCATGACCAAAATGTGAAAAGTGATGAAGAATGATGATGATCATTTTGACTACTTACAAATTAAAAAAAATCTCTTTGGCATCCACAAACACAGAAATGTGCAAACACTTTCCCATAATCAACCTCAAAGACATGT-AAACAGTTGATGGACAAAATAGTAACAATGtgttaatacccttcagcccaaggccacctggagcacatct--gtgggtgaagaagttgggtttattactcactgcagtgggagggagaatgcacaccttggataactaccgagtatcttggtaagtgccttttagatagagcctattataatatttgggcttCAGCTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            47779126 752 - 122973662 TAATATGTATATGTATAAGTGGAGGGTACAGACATTAACCGAAACATGATTTATCACCTCAACATTTTAAGTGTTCAAAAATGCCCATTGCCAAGG----CTAATCATTGGCTATATTGCACTGGGATTCTGTTGTTATTGTTTGCTTTAACCAGCTGAATA-CAAGGAGACAGATAAGTATC---CATTTTTCTCAAGACA----AACTATTGAATATGACATATGTCAAGTATCTTGAAGGCTCTGTAGACATATTTTTTAAATTATAAAACAAAAGATTTAAACCTTAGAAT----------------TCTTTACCTGCTGCCCCTCCTCCCCTTGTATTCCAACAATTTTGTTTTCTTC-ACCCTTGGACTCCTCTTTCCTCATTGTCACAAC----------CTAGCTGGAACTATACGTGAAGTGTCTACAATTGGGCAGTGAAGAAGGATTCTCTAAGCATCACCTAAAAATAAACACCAA-AAAGAAGTATGAGGGTAGTTTTAAGTACTTATAAATTAAAAAACTTCTCTTTGGTAACCACAAACATAGATATATACAGACAGTTTCTCATAATCAACCTTAAAGACACATAAAAAAGTTTATAGACAAAA---TAATAATGCATCCACAGCTTTCTTccaaagtccactaggaatatatcctagtgggtgaagaagttgggtttattacttgttcc--tgagtgcaagaataggtgctgtg---agccatgtggtgttttggtaagagggtgttagaaagaaactttgaaaggatttgggctttggttgg
i nomLeu3.chr1a            C 0 I 30
s colAng1.NW_012115577v1     536528 761 -   1829203 CAATGTGTATTTTAACAACCATAGTGTATAGACATCAACCAAAATATGAACGATCAGTTCATAGTATCAAGTCTTCATAAATGCACATCACTGTTG----CCAACCCATATCTATATTTTATTGGAAATCTGGCA-CGATGTTTTCTTTACTTTGGTGAATG-TAAGAAGGCAAGTAAGTCTTGAGTACTCATCCTAAGTCA---TATTTATTGGATACCACATATATTAAGTACCCTACAGGCCCAGTAGACACATTTCTAAAGCTATAAAATAAGATAGTTGAACCTTATAATCCCATTGCATTAGTAATATTTACTT-------TTCCACAACTTG-----AAACAATTCTATGTCCTTCAACTCTCGGACCCCTCTTTCCTCATTGTCTCTTC----------CTAGGTCAAA-TATGTATGAAGTTTTTACAACTCTGGAGTGCA----GATATTCTAAGTATGACCAAAATGTGAAAAGCCATGAAGAATGATGATAATCATTTTGACTACTTACAAATTAAAAAAAATCTCTTTGGCATCCAGAAACACAGAAATATACAAACACTTTCCCATAATCAACCTCAAAGACATGT-AAACAGTTGATAGACAAACTAGTAACAATGtgttaatacccttcagcccaaagccacctgcagcacatct--gtgggtgaagaagttgggtttattactcactgcagtgggagggagaatgcacaccttggagaattaccaagtatcttggtaagtgcctgttagaaagagcctattataatatttgggcttcagctgg
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128         25239156 757 -  25516302 TAATGTGTATTTTAACAACCATAGTATACAGACATTAACCAGAACATGA--CAACACTTCAAAATCTCAAGTTTTCGTAAATGTACATCCCTGTTG----TCAACCCACA-CTGTATTTCCTTGGAAATCTGGCA-TAATGTTTTCTTTAACTTAGTGAACACTAAGGAGGCAAATAAACCAT---CACTTATCCCAAGAGAAAGTATTCATTGAATGCCACATATGTCAAGTGATCTACAGACCCTGTAGACACATTTCCAAAATTATGAAACCAGGAATTTAAACCTTAGAATTCCATCACATTAGTATCCTTTATCT-------CCCTGCAACTTG-----GGATAAT--TGTTTCCTTTCACCCTAAGATGGCTCTTTTCTCATTGTCTCACCTAGAAAAATTCTGGGTGAAAATATGTGTGAGGTTTTCACAATTATGAAG--------GATTTTCTAAGCATAA-TAAAGTGTGGAAAGCCATAAAGAATGATGATGATTGATTTGACTAATTACAAGTTTAAAAA--TCTATTTGTAATCTACAAGCACATAAATATACAAATCCATTCCTTTAACCAGCCTCAAAGACATAT-AAGAAGTAAATAGACAAAGTAGTAATAATGtgtgaatacccttcagccaaagaccaccgggagcacagct---taggtgacgaagttgagtttaccgctcactgcact--gagggagaacgcacacctttgagaactcccaggtgtgtcagtaa-tgcatggtagaatgaacctattataagatttgtgcttaggtagg
i saiBol1.JH378128         I 174 C 0
s otoGar3.GL873550         18199990 714 -  18854210 ------TTTTGTAGATAACTAGAGTATATAGATATTAACCAAAACATGATTTATTACCTCAAGGTTGTAAGTG-TCACAAATGCCCATTACCAATGCTAACTAATCCTTGTGTTTATTGCATTGG-ACCCTGGTGTTATTGTTTGCTTTAACCTGGTAAACT-CTAGGAAACAAATAAGTCT----AGTTCATCCCAAGATAAACTATTTACTGAATATGACATCATTCAGGTAGCCTGTAGGCCCTGTACGCAC------------------------------ACCTTACAATTCCTTACCTGTTG----CTTCCCCT-------TCCCCCATATCC-----CAATAATTTT-TTTCCTTT-GCCCCCAGACTCTTTTGTCCTCATTGTCACAGC----------CTAATGGGAA-TATACACAAAATGTCTATAATTGAGGAGTGAGGAAGGATTCTCCATTTATGATCCAAAGATGGAAAGTCATAAGGAA-AATTATGGTAATTTTAACTACTTACAAATTTAAAAACTTCTTTTTAGTAACTACAA-CATAAAAATATACAAACCCTTTCTCATAATCAACCTCAAAGACATATAAAAGAGTTCAGAGACAA-----CAGTGATATGGCCatgcccctctgccaaaggccaccaggaacgcacct--gtgcgtgaagacgtctggtttatcacttattgc--caagtgcaagaatgttcactgtg---aaccttgtgatgtctcagcaagagggagttagaaagaacatattatcaggtttggcctttgattgg
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=-1294.000000
s hg38.chr6_GL000254v2_alt  1735289 1 +   4827813 -T
s gorGor5.CYUI01015528v1     548658 1 +   2037526 -T
i gorGor5.CYUI01015528v1   C 0 C 0
s colAng1.NW_012115577v1     537289 1 -   1829203 -t
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128         25239913 1 -  25516302 -t
i saiBol1.JH378128         C 0 C 0
s otoGar3.GL873550         18200704 1 -  18854210 g-
i otoGar3.GL873550         C 0 I 145
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            47779878 30 - 122973662 I
e panPan2.chr6             31028995 0 + 173848474 C
e panTro5.chr6             30604965 0 + 175400573 C

a score=43657.000000
s hg38.chr6_GL000254v2_alt  1735290 128 +   4827813 Atttcaagtttccctgggatttaattaattagtagttatgactgaatgatgacacagagaggtctatgccactgaaaaaagagtttattacccactgacataggaagcacagcacaaca---------------ggcagcacc
s gorGor5.CYUI01015528v1     548659 125 +   2037526 ATTTCAAGTTTCCCTGGGATTTAATTAATTAGTA---ATGACTGAATGATGACACAGAGAGGTCTAtgccactgaaaaaagagtttattacccactgacataggaagcacagcacaaca---------------ggcagcacc
i gorGor5.CYUI01015528v1   C 0 C 0
s colAng1.NW_012115577v1     537290 121 -   1829203 gtttcgagt-------ggatttaaTTAATTAATAGTTATGACTGAATGATGACACAGAGAGGTCAAtgccactgaaaaaagagtttattacccgccgacatagaaagcacagcacaaca---------------ggcagcacc
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128         25239914 127 -  25516302 gtttCAAATACCCAAAAGATTTGG-------------ATGACTGAGGAATGACAC--AGAGGCTGAtgccactgaaagaagagctaattacccacagatgcagg-agcacagcacaacaggcagggccacacggggcagcacc
i saiBol1.JH378128         C 0 C 0
e otoGar3.GL873550         18200705 145 -  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            47779878  30 - 122973662 I
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=37160.000000
s hg38.chr6_GL000254v2_alt  1735418  85 +   4827813 aaggctggtcaagtgg------------caacgggaggggaa-------agcatgggcgagagc----ctcta-----------------------atgtggt---------------ttttaggggaatgaatgagcaaggcagg
s gorGor5.CYUI01015528v1     548784  85 +   2037526 aaggctggtcaagtgg------------caacgggaggggaa-------agcatgggcgagagc----ctcta-----------------------atgtggt---------------ttttaggggaatgaatgagcaaggcagg
i gorGor5.CYUI01015528v1   C 0 C 0
s colAng1.NW_012115577v1     537411  85 -   1829203 aaggctggtccagtgg------------cagtgggaggggaa-------agcgtgggcgagaac----ctcta-----------------------acgtggt---------------tttcaggggaatgaatggacaaggcagg
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128         25240041  85 -  25516302 agggccgatcaggcgg------------cagcaggaggggaa-------ggcatgggtgagagc----ctcta-----------------------atgtggt---------------tttgaaaggaagaaatgagcaaagtgag
i saiBol1.JH378128         C 0 C 0
s otoGar3.GL873550         18200850 146 -  18854210 gaggccgggcaggtggattgcctgaactcacagggtggagaacagcctgagtcagggtgagacctgatctctaaaaagtagccaggcattggccggatgtggtggctcatgcctgtagtcccagcgctatgggaggccgaggcggg
i otoGar3.GL873550         I 145 I 232
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            47779878  30 - 122973662 I
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=10344.000000
s hg38.chr6_GL000254v2_alt  1735503 20 +   4827813 gtaagcagtgtagacatgtt
s gorGor5.CYUI01015528v1     548869 20 +   2037526 gtaagcagtgtagacatgtt
i gorGor5.CYUI01015528v1   C 0 C 0
s colAng1.NW_012115577v1     537496 20 -   1829203 gtaagcagtgtagacatgtt
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128         25240126 20 -  25516302 gtaagcagTGTAGACGTTtt
i saiBol1.JH378128         C 0 I 14152
e otoGar3.GL873550         18200996 232 -  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            47779878 30 - 122973662 I
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=45613.000000
s hg38.chr6_GL000254v2_alt  1735523 192 +   4827813 cagtattgatgagtctgaataatcttggtgactctgaggcatggggattgtctctagttgtctgatacctgtctctcagattattaagacaggagaatattgactgggagtatcggggccatgtgacagccagaaaaaaagaactcattctgagtttgggctctggtttggttagtttgcataagaaaggcg
s gorGor5.CYUI01015528v1     548889 191 +   2037526 cagtattgatgagtctgaataatcttggtgactctgaggcatagggattgtctctagttttctgatac-tgtctctcagattattaagacaggagaatattgactgggagtatcggggccatgtgagagccagagaaaaagaactcattctgagtttgggctctggtttggttagtttgcataagaaagacg
i gorGor5.CYUI01015528v1   C 0 C 0
s colAng1.NW_012115577v1     537516 191 -   1829203 caggattgatgagcctgaataatcttggtggctctggggtatagggattgtctctagtcgtctgatacctgtctctcagatgattaagacaggagaagactgactgggagtatcggggccctgtgagagccaga-aaaaatagcttgttctaagtttgggctctggttttgttagtttgcctaagaaagacg
i colAng1.NW_012115577v1   C 0 C 0
e saiBol1.JH378128         25240146 14152 -  25516302 I
e otoGar3.GL873550         18200996 232 -  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            47779878  30 - 122973662 I
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=23331.000000
s hg38.chr6_GL000254v2_alt  1735715 95 +   4827813 catttgcggtcaatccctttagtatctgtaggaatagactagtcttgggagggg-agt--cctcacaatcagtgaggactcagatgccagagcatgag
s gorGor5.CYUI01015528v1     549080 97 +   2037526 catttgcggtcaatccctttagtatctgtaggaatagactagtcctgggagggg-agtatccccacaatcagtgaggactcagatgccagagcatgag
i gorGor5.CYUI01015528v1   C 0 C 0
s colAng1.NW_012115577v1     537707 98 -   1829203 catttgcagtcagtccctttagcatctgtaggaataggctagtcctgggagggacagtatccccacagtcagtgaggacacagatgccagagcatgaa
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550         18201228 82 -  18854210 ca-ttgtggcagactcctgtagtatctg----------cta--cttgggaggctgagt--caagagaatctctt-gagcccaagtgtttgagggtgat
i otoGar3.GL873550         I 232 I 77
e saiBol1.JH378128         25240146 14152 -  25516302 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            47779878 30 - 122973662 I
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=14385.000000
s hg38.chr6_GL000254v2_alt  1735810 56 +   4827813 aataaggaaaaaaagaaaatacagataacacagttgAGAAATTCTATTTTATTTTA
s gorGor5.CYUI01015528v1     549177 56 +   2037526 aataaggaaaaaaagaaaatacagataacacaGTTGAGAAATTGTGTTTTATTTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s colAng1.NW_012115577v1     537805 56 -   1829203 aataaggaaaaaaagaaaatacagataatacaGTTGAGGAATTCTATTTTATTTTA
i colAng1.NW_012115577v1   C 0 C 0
e saiBol1.JH378128         25240146 14152 -  25516302 I
e otoGar3.GL873550         18201310 77 -  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            47779878 30 - 122973662 I
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=22323.000000
s hg38.chr6_GL000254v2_alt  1735866 56 +   4827813 ttgctctagatttagtact-gtcagtaagcagaggcaattctacaattcggtatttc
s gorGor5.CYUI01015528v1     549233 56 +   2037526 ttgctctagattgagtact-gtcagtaagcagaggcaattctacaattgggtatttc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            47779908 57 - 122973662 tcactctagattgggtactcgtcaggaagcaggggcaattctgtaattgaatgtctc
i nomLeu3.chr1a            I 30 C 0
s colAng1.NW_012115577v1     537861 55 -   1829203 ttgctctagattgagtat--gtcagtaagcaggggaaattctataattgggtatttc
i colAng1.NW_012115577v1   C 0 C 0
e saiBol1.JH378128         25240146 14152 -  25516302 I
e otoGar3.GL873550         18201310 77 -  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=217710.000000
s hg38.chr6_GL000254v2_alt  1735922 438 +   4827813 aataaatcttacctttagggagggtggactagagtgcagataaagct-taatccgtagagaagcatcagccactcatactagccgggagagggtttagacaaaattatgaagtacttttgtttcgcctcactttctcatgggctgagagtgatccagtgtggtgttggtattttgtgatataatttatgtcccagagg-gactaatatggcccagtagtgaagaccagaccagctcctggcaacactgatgcccagct----gtgccagacaagttcccagatattaggggctgct--ttttcttGATTAAATTCAATATTTAAAAATATCAGCATTACGTTTGAGAAATGATTAAGAA--ATGTCA---TATAGT-----------------------------------TATATTAGTAATAAATATGTGC--AAAAAATAAGAATGTAGACTACAAAATGGGAACCAGAATTAAAatccatcagc
s gorGor5.CYUI01015528v1     549289 437 +   2037526 aataaatcttacctttagggaggatggactagagtgcagataaagct-taatccgtagagaagcatcagccactcatactagccgggagagggtttagacaaaattatgaagtacttttgtttcgcctcactttgtcatgggctgagagtgatccagtgtggtgttggtattttgtgatataatttatgtcccagagg-gactaatatggcccagtagtgaagaccagaccagctcctggcaacactgatgcccagct----gtgccagacaagttcccagatattaggggctgct--ttttcttGATTAAATTCAATATTTAAAAATATCAGCATTACGTTTGAGAAATGATTAAGAA--ATGTCA---TATAGT-----------------------------------TATATTAGTAATAAATATATGC--AAAAA-TAAGAATGTAGACTACAAAATGGGAACTAGAATTAAAatccatcagc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            47779965 473 - 122973662 aataaaccttagctctagtgagggtggactagagcaga-ataaagctgtaattggtagacaagcatcggcccctggtgttagtggagagtgtgcttagacaaaattatgaagcgttcttgtttttcctcactttatcatcatctcagagtgaact-ttctaatgctgtttttttgtg--gtgattgtggtccaataggagaataacatggcttaacaatgaacattgggccagcttcatataacaaggaagcccagctataagtgtcagatcagttcctagatatcagagccttcttgttttctttcttaAATTCAACATTTAAAAATATCTACATCCCATTTGGAAAAAGATTAATGA--ATATTAGAGCATAATTTGGAATAGAA-AATGCAAGTGTCAAA--------TATAATAGTAATAAGTAAATGTCAACAAAATTAAAATGTGGATTAGGAAATGGGAGGGACGTTTAATATATCTTAGC
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115577v1     537916 438 -   1829203 aataaatcttacctttagggagggtggactagagtgcagatgaagct-taatcagtagagaagcatcagccactcatattagccaggacagggtttagacaaaattatgaagtactttt-ttttgcctcactttatcatgggctgagagtgacccagtgtggtgttggtattttgtgatataattgatatcccagagg-gactaatatggcccagtagtgaagaccagaccagctcccagcaacactgatgcccatct----gtgccagatgcattcccagatattaggggccact--ttttcttGATTAAATTCAATATTTTAAAATATCAGCATTACATTTGAGAAATGATTAAGAA--GTGTCA---TATAGT-----------------------------------TATATCAGTAATAAATATATGT-GAAAAAATAAGAAGCTAGACTACAAAATGGGAACTAGAATTAAAATCTATCAGC
i colAng1.NW_012115577v1   C 0 I 1181
s otoGar3.GL873550         18201387 476 -  18854210 aaaaaatcttatctcaagagagggtggattagaaaagg-ttaaaactgtaattagtagagaagcgtcagccgttcatatcagagggaaaagtgcttagacaaatctgtgaagtgttctcgttttatgtcactttagcatcatctcagaatgaccttgtctgatgttggtgttttgtgagctgatttatgtccaacaggagaatgacatggtttaacaaagaacatcaggctagcttcacatagcact-aggccta-------gggtcagatcagttcttaggtatctgaggctgctt-ttttTCCCCTTAAATTCTATATTTTCAAATACTTACACCCCATTTTAAAAATGTTTAATGAACACATTAGAACACAATTTGGGATAGAATAATGAAAACATCAAACAAATGTTTATGTTAGGAATAAATAAATGTGAATAAAGTTAAACTGTTGACTATGAAACAGGAATAACATTTAAAATC--tcagc
i otoGar3.GL873550         I 77 C 0
e saiBol1.JH378128         25240146 14152 -  25516302 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=35602.000000
s hg38.chr6_GL000254v2_alt  1736360 95 +   4827813 ttggcaaagacagaagtaaatgatggtagtattgatcagagtacagggaaaatgtactgttacgaagactgatggcattgaaaagtggtacaaaa
s gorGor5.CYUI01015528v1     549726 95 +   2037526 ttggcaaagacaaaagtaaatgatggtagtattgatcagagtacagggaaaatgtactgttacgaagattgatggcattgaaaagtggtacaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            47780438 95 - 122973662 ttggcaaagatgaaagtcaatgataataatattgagtagagaataggtgaaatttactgtcataaaagttaatgggattaaatactggcatacaa
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873550         18201863 95 -  18854210 ttagcaaagatgaaagtcaataataacagtattgatcagagtatagggaaaatgtactgtcataaaggttgatgcgattaagcactgatataaaa
i otoGar3.GL873550         C 0 C 0
e saiBol1.JH378128         25240146 14152 -  25516302 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e colAng1.NW_012115577v1     538354 1181 -   1829203 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=8258.000000
s hg38.chr6_GL000254v2_alt  1736455 40 +   4827813 cttctaaagggcacttttgcaaaatgtctcaataatttaa
s gorGor5.CYUI01015528v1     549821 40 +   2037526 cttctaaagggcacttttgcaaaatgtctcaataatttaa
i gorGor5.CYUI01015528v1   C 0 C 0
s otoGar3.GL873550         18201958 40 -  18854210 tttctagagagcattattgtaaaatgtatcaagaATATAA
i otoGar3.GL873550         C 0 C 0
e saiBol1.JH378128         25240146 14152 -  25516302 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e colAng1.NW_012115577v1     538354 1181 -   1829203 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            47780533  0 - 122973662 C
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=15226.000000
s hg38.chr6_GL000254v2_alt  1736495 161 +   4827813 atgttctgacgtttttgagacagagtcttgctctgtcgcccaggctggagtgcagtggcacaatcttgacttattgaagcctccacctcctgggttcaagcgattctcctgcctcagcctcccgcgtagctgggactacaggtgcgtgccaccacgcccag
s gorGor5.CYUI01015528v1     549861 161 +   2037526 atgttctgacgtttttgagatggagtcttgctctgtcgcccaggctggagtgcagtggcacaatcttgacttattgaagcctccacctcctgggttcaagcgattctcctgcctcagcctcccgcgtagctgggactacaggtgcgtgccaccacgcccag
i gorGor5.CYUI01015528v1   C 0 C 0
e saiBol1.JH378128         25240146 14152 -  25516302 I
e otoGar3.GL873550         18201998   0 -  18854210 C
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e colAng1.NW_012115577v1     538354 1181 -   1829203 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            47780533   0 - 122973662 C
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=14214.000000
s hg38.chr6_GL000254v2_alt  1736656 207 +   4827813 ctaatttttgtaattttagtagaaatggggtttcaccatgatggccaggctcatctcaaatccttgacctcaagtgatccacccgccttggtctcccaaagtgctgggattacaggggtgagggactgcgccgggcctaagtgttctgacattttgacatgaaaatttctcttttaggaatttatcccaaggaaataattacatatc
s gorGor5.CYUI01015528v1     550022 207 +   2037526 ctaatttttgtaattttagtagaaatggggtttcaccatgatggccaggctcatctcaaatccttgacctcaagtgatccacccgccttggtctgccaaagtgctgggattacaggggtgagggactgcgccaggcctaagtgttctgacattttgacatgaaaatttatcttttaggaatttatcccaaggaaataattacatatc
i gorGor5.CYUI01015528v1   C 0 C 0
s otoGar3.GL873550         18201998  77 -  18854210 CTATTTTTTTTAATT--------------------------------------------------------AAGTCATTT-----------------------------TTACATAGATCATG-----------------ATGTGTTTATATTTTGACACCAACATTTCTTT-----------------GGTAAAT-----------
i otoGar3.GL873550         C 0 C 0
e saiBol1.JH378128         25240146 14152 -  25516302 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e colAng1.NW_012115577v1     538354 1181 -   1829203 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            47780533   0 - 122973662 C
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=56425.000000
s hg38.chr6_GL000254v2_alt  1736863 315 +   4827813 tttctaaaaacgcatatataggccgggcgcggtggctc-atgcctgtaatcccagcactttgggaggccgaggcaggtggattac--gaggtcaggagttcaagatcagcctggccaacatggtgaaaccccgtctctactaaaaactacaaaaattagccgagcgtggtggcagacacctgtggttccggctactcgggaggctgaggcagaagaattgcttgaacccgggaggtggaggttgcagtgagctgcgatcatgtcactgcacttcagcctgggtgacaggtcgagactctgtcccaaaacaaaaaca---------------------------------------------------------------------------------------aa
s gorGor5.CYUI01015528v1     550229 315 +   2037526 tttctaaaaacgcatatataggctgggcgcggtggctc-atgcctgtaatcccagcactttgggaggccgaggcaggtggattac--gaggtcaggagttcaagatcagcctggccaacatggtgaaacccggtctctactaaaaactacaaaaattagccaagcgtggtggcagacacctgtggttccggctactcgggaggctgaggcagaagaattgcttgaacccgggacgtggaggttgcagtgagctgcgatcatgtcactgcacttcagcctgggtgacaggtcgagactctgtcccaaaacaaaaaca---------------------------------------------------------------------------------------aa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            47780533 371 - 122973662 tttctaaaga-----------gtcaggcatgttggcttaatgcctgcattcccagcactttgggaagctgaggtgggcagattgcttgagtccaggagttccagaacagccagggcaacatggcgaaaccccatctctacaaaaaattaaaaaaa--aattaggcatggtggcaccctcctgtagtcc---------------------cacgaggattgcctgagctggggaggtcaaggctacagtgagctgtgatcacacgactgcactccagcctgagcaacagagtgagaccccgtctcaaagaaaaaacaccccaatgtctaaagagcatttttggaaaatgtctcaagaagatcatgttgatgcaaaaaatttatcttctaaaaatgtagcctaagaa
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873550         18202075 225 -  18854210 ----------------------CTGGGT----TCActc-acacctataatcctggcactctgggaggctgaggtgggtggattgtctgggctcatgagtttgagaccagcctgagc--caaagcaagatcccatctct-------------aaaaatagccgggtgttgtggtgggagcctgtagtcccagctacttaggaggctgaggcaaggggaAT--TTAttctaggaa--------------------------------------tttatcctaag-aagatattcacacatgttttcaaaa-------------------------------------------------------------------------------------------------
i otoGar3.GL873550         C 0 C 0
e saiBol1.JH378128         25240146 14152 -  25516302 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e colAng1.NW_012115577v1     538354 1181 -   1829203 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=300454.000000
s hg38.chr6_GL000254v2_alt  1737178 597 +   4827813 aaaa-ccacatat---------------ataagaatgttccttgaattgtggtttataaaagcaaaataatggaaataacccaaaGATTGTAATGAATATAGTGATGATAGTTATCAATAATGGAGCATTTAGTATGACTCAGAAAATAATGCCATGGCT-TTACATAGAGA--GTCAGATTTAATCCTCAATGCAAACCCATGGGGAACTCAATATGTGATCCTTTGTACAGACAGGGAAGG--------AGAGAGGTAAAGAAGGTGGTGGGGCTAGGGTTGAACCCTGGAGATTTTCTCTCAGAGGCCTTGTTGACTTGTCTTCCATTGATTCTCTCTTCA-------------------TCTGCACCTTACACAAGTGAACTGTTTTGATGTCCCAGAATGTTCTATGGACAGGAGGCCACT-GGCTCAGAGCTCAGGAAGACAA-GAAGGGCA---ATGACTTAACTGCCAAATTCACGCAGAAGTCCGTTCATCCAGGGTGTATTTCCAG---------TGATCAGGAGATCTGCTAAGCACTTGAGGATATAATGAAGAGC--AAGAGTAAAATCTTGGAGATGGGGAGTTTTCAATATTGTAAGGAAGATAAATATTTAGCAAAAATTGCC-CCAAGAT-TGTGAAATTGCTA
s gorGor5.CYUI01015528v1     550544 598 +   2037526 aaaaaccacatat---------------ataagaatgttccttgaattgtggtttataaaagcaaaataatggaaataacccaaaGATTGTAATGAATATAGTGATGATAGTTATCAATAATGGAGCATTTAGTATGACTCAGAAAATAATGCCATGGCT-TTACATAGAGA--GTCAGATTTAATCCTCAATGCAAACCCATGGGGAACTCAATATGTGATCCTTTGTACAGACAGGGAAGG--------AGAGAGGTAAAGAAGGTGGTGAGGCTAGGGTTGAACCCTGGAGATTTTCTCTCAGAGGCCTTGTTGACTTGTCTTCCATTGATTCTCTCTTCA-------------------TCTGCACCTCACACAAGTGAACTGTTTTGATGTCCCAGAATGTTCTATGGACAGGAGGCCACT-GGCTCAGAGCTCAGGAAGACAA-GAAGGGCA---ATGACTTAACTGCCAAATTCACGCAGAAGTCCGTTCATCCAGGGTGTATTTCCAG---------TGATCAGGAGATCTGCTAAGCACTTGAGGATATAATGAAGAGC--AAGAGTAAAATCTTGGAGATGGGGAGTTTGCAATATTGTAAGGAAGATAAATATTTAGCAAAAATTACC-CCAAGAT-TGTGAAATTGCTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            47780904 614 - 122973662 gaaaatcacacgtttttaaaaatatataacaagaatattccttgaatgattgtttataaaa-caaaagaatgaaaacaacctaaatagtataatcaata---tgaTGTTACCTATGAATAGTGGA-CACTTAATATGTCTCAGTCAGTAATAATGTGTATAATACATAGAGAATATATAATTTAATCATCAGAGAAAACCCATCAGGAATCTACTATGTGACTC---------------------------AGAGAGGTTGAGGAGGTGGTGAAGCT-GGATTGAAGCCAGGAGATTTTCTCTCAGACACCTAATTGACTCATCTTTTGTTGATGCTCTGCCCATAAGGTAGGCGAGTGTGACTCTGTACCCCATGCAAGTGAACCATTTCAATGTCCGGGAACATTCTAT-GACAGGCAGCTGCTAGGCTCAGAGCTTGAGAGGACAC--AAGGGCACGTGTGACTTCACCGCCCACACCACACTAAAGTCCA-TCATCCGGTGTATATTTCAAG-------GTGAATCaagatattagctagaca-ttgaagatagaa-gaagaGCTAAAAAGTAAGATCTTGATGATATGGAGCTTGCACTGTCATGAGAGAGACGGACATTTAGCAAAAATTACCAACATAAA-TGTGAAACCACTA
i nomLeu3.chr1a            C 0 I 5
s colAng1.NW_012115577v1     539535 599 -   1829203 -aaaaacacatat---------------ataagaatgttcctcgaattgtggtttataaaagcaaactaatggaaataacccaaaGATTGTAATCAATATAGTGATGATAGTTATCAATAATGGATCATTTAGTATGACTCAGAAAATAATGCCATGGCT-TTACATAGAGA--GTCAGATTTAATCCTCAATGCAAACCCATGGTGAACTCAGTATGTGATCCTTTGTACAGACAGGGAAGG--------GGAGAGGTAAAGAAGGTGGTGGGGCAAGGGTTGAACCCTGGAGATTTTCTCTCAGAGGCCTTGTTGACTTGTCTTGCATTGATTGTCTCTTCA-------------------TCTGCACCTCACACAAGTGAACTGTTTCAATGTCCCAGAATGTTCTATGGACAGGAGGCCACTAGGCTCAGAGCTCAGGAGGACAA-GAAAGGCA---ATGACTTAACTGCCAAATTCACACAGAAGTCCATTCATTCAGAGTGTATTTCCAG--------TGAATCAGGAGATCTGCTAAGCACTTGAGGATATAATGAAGAGC--AACAGTAAAATCTTGGAGATGGGGAGCTTGCAATATTCTAAGGAAGATAAATATTTAGCAAAAATTACC-CCAAAAT-TGTGAAATTGCTA
i colAng1.NW_012115577v1   I 1181 C 0
s otoGar3.GL873550         18202300 623 -  18854210 -------gtatat--------------aacaacgatattctttgaattgcgatttacaaaaaccaaggagtggaaacaactaaaatggcttaatcaata---tgacattagctaTCAATAGTAGG-CACTTAAGAAGCTTTAGTCAATAATAATGTATATTTTACACAGAGA--ATCA-ATTTAATCTTCAGAGCAAGCCCATGATGAACCCAAAATGCT-TCCTTTGTACAGACAGGGAAAGGAAGACTCAGAGGGGGTAAAGAGGTGGTGGAGCCTGGGTAGAGCCAAGGGGATGTTCTCTCAGAGGCTATGTTGACTTATGTGTCATTGATACCCTGCCCATAAAGTAGGAGAGTGTGACCCTGTATCCCATTGAAGCGAACT-TTCCAATGTCCCAGAAGATTCTAT-AGCAGGTGGCCACTAGGCTCAGAGCTCAGGAGGACATTGAGAAGCA-GTGTGACTTCAGGGCCCAAACCACACT-AACTCTGAGCATCCAGTGCATATTTCAAAGCCTCAAGTGAATCAAGAGCTCACCTAGACA-CCAAAGATACCA-GAAGAGC--TAACATGAGATCCTGGTGCTATGAAGTCTGCATTGTCATGAGGGAGATGGACATTTAGCAAACATTACC-AAAGTATGTGTAAAATCACCA
i otoGar3.GL873550         C 0 I 267
e saiBol1.JH378128         25240146 14152 -  25516302 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=129246.000000
s hg38.chr6_GL000254v2_alt  1737775 299 +   4827813 ---------------------ATGAGC-GTAAGGGAAAAGTTTGTGATATCATGAAAGCAGGTTACAAGGAGACCTAATGGGT-CCCTACCACTATTACCAATTATGTGTgaaagatgtaagaaaaca----gcagttatgagatttgaacaaatttataaacaatttcatgcagagaactagaaagagctctggaattttaaaatatg--------atcattgaaataa-----------------------------------agagtttaaaaaatgaact--gaaatgaa---------------agttgtgtgct---------gcaaggtag-------tacaaaataaaaacgtgatgccaagcatgatagaac---tttaagaatattatactatca
s gorGor5.CYUI01015528v1     551142 300 +   2037526 ---------------------ATGAGCTGTAAGGGGAAAGTTTGTGATATCATGAAAGCAGGTAACAAGGAGACCTAATGGGT-CCCTACCACTATTACCAATTATGTGTGAAAGATGTAAGAAAACA----ACAGTTATGAGATTTGAACAAATTTATAAACAATTTCATGAAGAGAACTAGAAAGAGCTCTGGAATTTTAAAATATG--------ATCATTGAAATAA-----------------------------------AGAGTTTAAAAAATGAACT--GAAATGAA---------------AGTTGTGTGCT---------GCAAGGTAG-------TACAAAATAAAAACGTGATGCCAAGCACGATAGAAC---TTTAAGAATATTATACTATCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            47781523 297 - 122973662 ---------------------ATGAATTCTGAGAGAAAATTTCATAATATCGTGAAAGAAGATAACAAGGAGACCCAACAGGTCCCCTACTACTATTATCAATAATATATAAAGGATGTAAGAAAATAAGTGGCATTTATGAAATAGGAGCTCATTTATGTAAAATTATAC-------acaagaacaagctctggaaattaaaaatatgattacagaatcatagaaatga-----------------------------------ataattcattagataatttagaagataaa---------------AGTCATA------------------------------ATAAATTGGAATAATGATTGCAAAAAAGAAAGAAAAAGTGTAAGAACATTATACTATCA
i nomLeu3.chr1a            I 5 n 5
s colAng1.NW_012115577v1     540134 300 -   1829203 ---------------------ATGAGCCATAAGGGAAAAGTTTGTGATATCATGAAAGCAGGTAACAAGGAGACCTAATGGGT-CCCTACCACTATTACCATTTATGTGTGGAAGATGTAAGACAGCA----Acatttatgagatttgaacaaatttataaacaatttcatgcagagaactagcaagagctctggaattttaaaatatg--------atcatcgaaataa-----------------------------------agaattcaaaaaatgaact--gaagtgaa---------------agttatgtgct---------gcaaggtag-------tacaaaataaaaatgtgatgccaagcatgatagaac---tttaagaatattatactacca
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550         18203190 399 -  18854210 ataggcgccgagccATCACCACTAAATTTTGAGAGACAGTTTCATGATACAGTGAAAGCAGATGACAAAGAGACCCAACTGGT-ACCCACCACTATGAACTATCATATACAAAAGACATTAGAAAACATATAGTATGTATGACATAGGGACACATTTATGTAAAATTATATACA-AGAACAAGAAAAA-TTCTAGAAGTTAAAAGTATGATTAGAGAATCATAGAAATGataagaacaaactctggaaattaaaactatgcttacagaatcatagaagtgata---gaaatgaatgaatcatagaaatgagtaatgcaatagatgaatggaaaggcaaaagtcctgacaaaatggaatagtaattgcaaaaaggaaagaaaaaaaataagaatattgtactatca
i otoGar3.GL873550         I 267 C 0
e saiBol1.JH378128         25240146 14152 -  25516302 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=55756.000000
s hg38.chr6_GL000254v2_alt  1738074 188 +   4827813 attaaggaattccagcagtctcataatataagttcca-ataaccatagaaagtaa--------ttaaaagtaattcaagaaaatgttttgaaggctactgacaaaaatgtatagtgtgaatggct--gcaacaaagttctcaatacaggagatggaaacagacccacaccaagactcatgacaacaaaatttcagaGAG
s gorGor5.CYUI01015528v1     551442 188 +   2037526 GTTAAGGAATTCCAGCAGTCTCATAATATAAGTTCCA-ATAACCATAGAAAGTAA--------TTCAAAGTAATTCAAGAAAATGTTTTGAAGGCTACTGACAAAAATGTATAGTGTGAATGGCT--GCAACAAAGTTCTCAATACAGGAGATGGAAACAGACCCACACCAAGACTCATGACAACAAAATTTCAGAGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s colAng1.NW_012115577v1     540434 178 -   1829203 atcaaggaatttcagcagtctcataatataagctcca-aaaaccatag------------------aaagtaattcaagaaaatgttttaaaggctgctgacaaaaatgtatggcgtgaatggct--gcaacaaagttcttaatacaggagatagaagcagacccacaccaaggctcatgacagtgaaatttcagagag
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550         18203589 174 -  18854210 attaaggaattccaac-----cataagacaagtttcacaaaaaaatggggagaaggaaatgactaaaaaataattccagaatatgcctcagagtttacagat-------cacactttggatcgcccagccaca-------------agtaaataaaaatagacctacactatgacacaccatgatgaaatttcagaaag
i otoGar3.GL873550         C 0 n 0
e saiBol1.JH378128         25240146 14152 -  25516302 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            47781820   5 - 122973662 I
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=404509.000000
s hg38.chr6_GL000254v2_alt  1738262 1603 +   4827813 TGAAAGACAGAGCAAGACCAATGGACAAAGGAATGGCAGGAGGTCTGGTCGTGTGTGTGCATTTCCTCCTTCCCGTCTGTCATTGTCCTTCCTCACCAGGCCTGCAGATCACCTGTGATGACTTGGCCTCTTGCCATCCCTAGCTGGGCAAACTCCATCATGGTGACACACGGGATGGCAGAAGTGCAA--------------------------------GGCCTCGTTTCTGCTGGATGAGCCTTCTGGAGACTGTCTCAGGGTTTTCTGAGAACTTCTTTAAAACCTGGTCTACGGGCATGCATTACCCCAGTTATTTTTTCCCTAAGTGAAAAATCAACCAGAGGAGATGATTTATTTTAATAGCCTTATTGCAGGAGAGGAAGGTGAAAAGTGTTTCTATTCATTGGCCCATTAGTTACAATGGGCAGAGGCCACTGAGCGAGCAGCGGGTGGTGGCAGTGATGACCACACGTTCTCACGGCAGCGCAACACTTTTGAGACAAGTTCCCACCTCTCCATTAAACATGTCTTCTCCACGTGCAGAAAATGTGGTCTCGTAGCTTCCCTTCTCAGTGCTGGATTGCTGGCATTTCATTTTCCTTATCAGAGACATGAATATCTTTGTTCTTCTTGGATTTCTAAGACTTCAGGTTTTCTTCAGGGAGAAGCTGCTTAGGGAGGCTCCTGCGTGGACCGAGTCCTTCCTGAGGGTTTGCTTGGTGCCCTAACTGTGGCTGACTGCCTCCCGCGGGGTCCCAACTTTATACCCAGAGGTAAGGACAGATGCTTCCAGCTCCATCTTATAACTTCCACATGAAATTTGAGGTCAGGAACTTCTCTTAACTCGTCTTAAAGGGCCTCATACTTACATTCTTGACTCGGAAAATAATTAAGTGTGCGTTTGAACATGTTTCCTCCGCAATTTACTCTCTGGAGGGGAATACATTGAAAACCCAGTTTATTTTCAGATACTGAGTGGGATTGAAAAGCTGAATTGTCTGTTTTCCTGCAGGGCACACAGAGGAACTGGCTGTCCCACACCACTCTGACATTTCCAGAGAAGCACCGTCCTCTTCCAGTAGGACATGAGTAAGACCAGTGAGGAGCCAACATGCAGCCCCTGGGCATCTCTGGGGTTGAAGGAAAGATATATATGTCCTTCTGATGTGTGGAGCCCTGAGGGCAGTGTTCAAGACCCTGCATTTTCCGAAGTACTTGTTTACTGAGCAAGTGTTTCTGCTTGTTGCATTATGTCAGGGGATATGGAAGCCACTTTTCATCCAGCCAAACACAGATGCAAATGAGATGTTCTGGGAGAAAGCAGAAAAAGCCCTTTTCACAGAGTTCCTTA-TTTTACTATTCTATTACACTTGTCTGAGGTTACAATCACATCCTTTTTTAACAATCTCTAAATGAGAAAATCATCAAAAGGGTATGTAGTGAGTGACAGACACAGGATAAATGCTGTAAGTCAGTGTTTGATGAAAGATACTGGTGTTCCAGGATGTCAGAGTCTCCTGGGTGCCAGTAGGGAGGTGGTCAGGGACTTTATCCAAGAAGCAGAAAGAAGAGCTTCAGGGACATGAGGATGTCTCATAGCCAAGGACAGGACAGTAAAGGGCCCCGTGTG
s gorGor5.CYUI01015528v1     551630 1602 +   2037526 TGAAAGACAGAGCAAGACCAATGGACAAAGGAATGGCAGGAGGTCTGGTCATGTGTGTGCATTTCCTCCTTCCCGTCTGTCATTGTCCTTCCTCACCAGGCCTGCAGATCACCTGTGATGACTTGGCCTCTTGCCATCCCTAGCTGGGCAAACTCCATCATGGTGACACACGGGATGGCAGAAGTGCAA--------------------------------GGCCTCGTTTCTGCTGGGTGAGCCTTCTGGAAACTGTCTCAGGGTTTTCTGAGAACTTCTTTAAAACCTGGTCTACAGGCATGCATTACCCCAATTATTTTTTCCCTAAGTGAAAAATCAACCAGAGGAGATGATTTATGTTAATAGCCTTATTGCAGGAGAGGAAGGTGAAAAGTGTTTCTATTCATTGGCCCATTAGTTACAATGGGCAGAGGCCACTGAGCGAGCAGCGGGTGGTGGCAGTGACGACCACACGTTCTCACGGCAGCCCAACACTTTTGAGACAAGTTCCCACTTCTCCATTAAACATGTCTTCTCCACATGCAGAAAATGTGGTCTTGTAGCTTCCCTTCTCAGTGCTGGATTGCTGGCATTTCATTTTCCTTATCAGCGACATGAATATCTTTGTTCTTCTTGGATTTCTAAGACTTCAGGGTTTCTTCAGGGAGAAGCTGCTTAGGGAGGCTCCTGCATGGACCGAGTCCTTCCTGAGGGTTTGCTTGGTGCCCTAACTGTGGCTGACTGCCTCCCGCGGGGTCCCAACTTTATACCCAGAGGTAAGGACAGATGCTGCCAGCTCCATCTTATAACTTCCACATGAAATTTGAGGTCAGGAACTTCTCTTAACTCATCTTAAAGGGCCTCATACTTACATTCTTGACTCAGAAAATAATTAAGTGTGCGTTTGAACATGTTTCCTCCGCAATTTACTCTCTGGAGGGGAATACATTGAAAACCCAGTTTATTTTCAGATACTGAGTGGGACTGAAAAGCTGAATTGTCTGTTTTCCTGCAGGGCACACAGAGGAACTGGCTGTCCCACACCACTCTGACATTTCCAGAGAAGCACCGTCCTCTTCCAGTAGGACATGAGTAAGACCAGTGAGGAGCCAACATGCAGCCCCTGGGCATCTCTGGGGTTGAAGGAAAGATATATATGTCCTTCTGATGTGTGGAGCCCTGAGGGCAGTGTTCAAGACCCTGCATTTTCCGAAGTACTTGTTTACTGAGCAAGTGTTTCTGCTTGTTGCATTATGTCAGGGGATATGGAAGCCACTTTTCATCCAGCCAAACACAGATGCAAATGAGATGTTCTGGGAGAAAGCAGAAAAAGCCCTTTTCACAGAGTTCCTTA-TTTTACGATTCTATTACACTTGTCTGAGGTTACAATCACATCCTTTTTTAACAATCTCTAAATGAGAAAATCATCAAAAGGGTATTTAGTGAGTGACAGACACAGGATAAATGCTGTAAGTCAGTGTTTGATGAAAGATACTGGTGTTCCAGGATGTCAGAGTCTCCTAGGTGCCAGTAGGGAGGTGGCCAGGGACTTTATCCAAGAA-CAGAAAGAAGAGCTTCAGGGACATGAGGATGTCTCATAGCCAAGGACAGGACAGTAAAGGGCCCCGTGTG
i gorGor5.CYUI01015528v1   C 0 C 0
s colAng1.NW_012115577v1     540612 1626 -   1829203 tg-aagacagagaaagaCTGAGGGACAAAGGAATGGCAGGAGGTCTGATCATGTGTGTGCATTTCCTCCTTCCCATCTGTCATTGTCCTTCCTCACCAGGCCTGCAGATCGCCTGGGATGACTTGGCCTCTCGCCATCCCTAGCTGGGCAAACTCCATCACGGTGACACACAGGATGGCAGAAGTGCAAGGCCTCGTTCCCACTGGGCCTCGTTCCCACTGGGCCTCGTTCCCGCTGGGTCAGCCTTCTGGAAACTGTATCAGGGTTTTCTGAGAACTTCTTTAAAACCTGGTCTACCTGCATGCATTACCCCAGTTATTTTTTCCCTAAGTGAAAAATCAGTCACA-GAGGTGATTTATTGTAATAGCCTTGTTTCAGTACAGGCAGGTGAAAAGTGTTTCTCTTCATTGACCCATTAGTTACAATGGGGAGGGGTCACTGAGTGAGCAGCGGGTGGTGGCA-----GACCACATCCTCTTATTGCGGCCCAACACTTTTCAGACAACTTCCCACTTCTCCGTTAGATGTGTCTTCTCCACATGCAGAAAATGTGGTCTCATAGCTTCCCTTCTTGGTGCTGGATTGCTGGCATTTTATTTTCTTTATCAGAGACATGAATATCTCTGTTCTTCGTGGATTTCTAAAACTTCAGGGTTTCTTCAGGGAGAAGCTGCTTAGGGAGGCTCCCGCATGGACCGAGTCCTTCCTGAGGGTTTGCTTGGTGCCCTGAATGTGGCTGACTGCCTCCTGCGGGGTCCCAACTGTATACCCAGAGGTGAGGACAGATGCTGCCAGCTCCATCTTACAACTTCCACATGAAATTTGAGGTCAGGAACTTCTCTTAATTCATCTTAAAGGGCCTCATACTTACATTCTTGACTCAGAAAATAATTAAGTGTGTGTTTGAATATGTTTCCTCTGCAATTTGCTCCCTAGAGAGGAATACACTGAAAACCCAGTTTATTTTCAGATACTGAGTGGAATTGAAAAGCTGAATTGTCTG-TTTCTTGCAGGGCACACAGAGAAACTGGCTGTCCCATGCCACTCTGACATTTCCAGGGAAGCACCATGCTCTTCCAGTAGGACATGAGTAAGGCCAGTGAGGAGCCAACATGCAGTCCCTGGGCA--TTTAGGGTTGAAGGAAAGATACATATGTCCTTCTGCTGTGTGTAGTCCTGAGGGTGGTGTTCAAGACCCTGCATTTCCCAAAGTACTTGTTTACTGAGCACGTGTGTCTGCTTGTTGCTTTATGTCAGGGGATATGGAAGCCACTTTTCATCCAGCCAAACAGAGATGAAAATGAGATGTTCTGGGAGAAAGCAGGAAAAGCCCTTTTCACAGAGTTCCTTATTTTTACAATTCTATTACACTTGTCTGAGGTTACAATCACATCCCTTTTTAACAACTTCTAAATGAGAAAATCATCAAAAGGGTATTTAGTGAGGGACGGACACAGGATAAATGCTGAACATCGGTGTTTGATTAAAGATACTGGTGTTCCAGGATGTCAGAGTTCCCTAGGTTTCAGTAGGGAGGTGGGCAGGGACTTTATCCAAGAAGCAGAAAGAAGAGCTTCAGGGAGATGAGGATGTCTCACAGCCAGGGACAGGACAGTGAAGGGCCCCGTGTG
i colAng1.NW_012115577v1   C 0 C 0
e saiBol1.JH378128         25240146 14152 -  25516302 I
e otoGar3.GL873550         18203763    0 -  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1     654374 4122 -    735854 I
e chlSab2.chr17            29880450 4196 -  71996105 I
e cerAty1.NW_012002535v1     744420 4809 -    863181 I
e macNem1.NW_012012100v1     643856 4183 +   1495729 I
e macFas5.chr4             30389215 4195 - 170955103 I
e rheMac8.chr4             31097146 4209 + 172585720 I
e nomLeu3.chr1a            47781820    5 - 122973662 I
e panPan2.chr6             31028995    0 + 173848474 C
e panTro5.chr6             30604965    0 + 175400573 C

a score=2444917.000000
s hg38.chr6_GL000254v2_alt  1739865 765 +   4827813 AGTGCATCACAGAGGTCTGTTACTGTTCAGACCCCAAAGCTCAGCACCCAGTGTGGCATGTGGCAAGACCTCAGCAAACACATCAGTTGGCTGGATGAAGGAGGGCAGGTGTGAGCCGACAAGGAAAATCTTGTGATTTTTGTTGGGAAATGAATGTAAAAGTGTTGATGTACCTCCCTTGTAAGGAGATAGAAAGGTAGAGAGCAGACAGATGCATGCatggatgaatgcat------------------------------------------------------------------------------------------------------ggatggatggatggttggatggacggatggatgTTCATTTtctgtgtgtgtttctatctctgttctgcctttctgttttgtctctggctctgtctgtatctGCCATTGTCCCTTCACAACCATGCCTTCACTATTATCAGTAACATCTTTTACCTGGTCTTATAGGATCTTGCCTGTGTTGTATTAGTGGTCA-AGGACAGAAAAAAGAAAGAAGTCTGTGGAAAACAAAATAAAGGAAACAGATGCTTCTGACATGCGGCAGTGGAAGGATGTGTGGACCTGAGGCCCCCAGGGAGACAGGGGCTGCGCCTCACTGCAAAGTCGATCCTGCTGAACACAGAGGGGAAACGCGCTCAGACAGCCCTGCCCGTGCTGATCAGAAGGGAGGGTTGCGCCTCCAGATCCTTCTCCCTGTGTTTCTTCAGGGCCCAGCCCTGAGAGTTCCAGGGTCCCATTTTCTTAGTTAGGACCTTAAGACCCTATCAGAGTCCAGCCCCAGGAAGCCTGCAGTCATAGCACTGGGCTAGACCAA
s gorGor5.CYUI01015528v1     553232 762 +   2037526 AGTGCATCACAGAGGTCTGATACTGTTCAGACCCCAAAGCTCAGCACCCAGTGTGGCATGTGGCAAGACCTCAGCAAACACATCAGTTGGCTGGATGAAGGAGGGCAGGTGTGAG-CAACAAGGAAAATCTTGTGATTTTTGTTGGGAGATGAATGTAAAAGTGTTGATGTACCTCCCTTGTAAGGAGATAGAAAGGTAGAGAGCAGACAGATGCACGCatggatgaatgcat------------------------------------------------------------------------------------------------------ggatggatggatggctggatggacggatggatgTTCATTTtctgtgtgtgtttctatctctgttctgcctttctgttttgtctctggctctgtctgtatctGCCATTGTCCCTTCACAATCATGCCTTCACTATTATCAGTAACGTCTTTTACCTGGTCTTATAGGATCTTGCCTGTGTTGTATTAGTGGTCA-AGGACAGAAAAAAGAAAGAAGTCTGTGGAAAACAAAATAAGGGAAACAGATGCTTCTGACATGCGGCAGTGGAAGGATGCGTGGACCTGAGGCCCCCAGGGAGACA-GGGCTGCGCCTCACTGCAAAGTCGATCCTGCTGAACACAGAGGGGAAACGCGCTCAGACAGCTGTGCCCGTGCTGATCAGAAGGGAGGGTTGAGCCTCCAGATCCTTCTCCCTGTG-TTCTTCAGGGCCCAGCCATGAGAGTTCCAGGGTCCCATTTTCTTAGTTAGGACCTTAAGGCCCTATCAGAGTCCAGCCCCAGGAAGCCTGCAGTCATAGCACTGGGCTAGACCGA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31101355 844 + 172585720 AGTGCATCACAGAGGTCTGTTACTGTTCCGACCCCAAAGCTCAGCACCCCGTGCGGCACGAGGTAAGACCTCAGCAAACACATCAGTTGGCTGGATGAAGGAGGACAGGTGTGAGCTGACAAGGAAAATCTTGTGATTTTTGTTGGCAGATGAATGTAAAAGTGTTGATGTACCTCCCTTGTAAGGAGATAGAAAGGTAGAGAGCAGACAGATGCATGCatggatgaatgcatgtatggatggaaggatggacggacggac----------------------ggacggacggacggatggatggatggatggatgaatggatggatggatggatgaatggatggatggatggatggatggatggatgTTCATTTtctgtgtgtgtttctatcgctgttctgcctttctgttttgtctctggctctgtctgtgtgtgCCATTGTCCCTTCACAATCGTACCTTCATTATT-TCAGTAACATCTTTTACCTGGTCTTACAGGATCTTGCCTGTGTTGTATTAGTAGTCACAGGACAGAAAAAGGAAAGAAGTCTGTGGAAAACAAAATAAGGGAAACAGATGCTTCAGACATGGGGCAGTGGGAGGATGTGTGGACCTGAGGCCCCCAGGGAGGCAGGGGCTGCGCCTCACTGCAGAGTCAATCCTGCTGAACACAGAAGGGAAAAGCGCTCAGACAGCCGTGCCTGTGCTGATCAGAAGGGAGGGCTGCGCCTCCAGATCCTTCTCCTTGTG-TTCTTCAGGGCCCAGCCCTGGGAGTTCCAGGGTCCCACTTTCTGAGTTAGGACCTCAAGGCCCTATCAGAGTCCAGCCCCAGGAAGCCTGCAGTCATAGCACTGAGCTAGTCCGA
i rheMac8.chr4             I 4209 C 0
s macFas5.chr4             30393410 845 - 170955103 AGTGCATCACAGAGGTCTGTTACTGTTCCGACCCCAAAGCTCAGCACCCCGTGCGGCACGTGGCAAGACCTCAGCAAATACATCAGTTGGCTGGATGAAGGAGGACAGGTGTGAGCTGACAAGGAAAATCTTGTGATTTTTGTTGGCGGATGAATGTAAAAGTGTTGATGTACCTCCCTTGTAAGGAGATAGAAAGGTAGAGAGCAGACAGATGCATGCatggatgaatgcatgtatggatggaaggatggatggacggacggacggacggacggatggatgga----------------------tggatggatggatggatggatggatggatggatggatggatggatggatggatggatggatgTTCATTTtctgtgtgtgtttctattgctgttctgcctttctgttttgtctctggctctgtctgtgtctGCCATTGTCCCTTCACAATTGTGCCTTCATTATTATCAGTAACATCTTTTACCTGGTCTTACAGGATCTTGCCTGTGTTGTATTAGTAGTCACAGGACAGAAAAAGGAAAGAAGTCTGTGGAAAACAAAATAAGGGAAACAGATGCTTCAGACATGGGGCAGTGGGAGGATGTGTGGACCTGAGGCCCCCAGGGAGACAGGGGCTGCACCCCACTGCAGAGTCAATCCTGCTGAACACAGAGGGGAAAAGCGCTCAGACAGCCGTGCCTGTGCTGATCAGAAGGGAGGGCTGTGCCTCCAGATCCTTCTCCTTGTG-TTCTTCAGGGCCCAGCCCTGGGAGTTCCAGGGTCCCACTTTCTGAGTTAGGACCTCAAGGCCCTATCAGAGTCCAGCCCCAGGAAGCCTGCAGTCATAGCACTGAGCTAGTCCGA
i macFas5.chr4             I 4195 C 0
s macNem1.NW_012012100v1     648039 840 +   1495729 AGTGCATCACAGAGGTCTGTTACTGTTCCGACCCCAAAGCTCAGCACCCCGTGCGGCACGTGGTAAGACCTCAGCAAATACATCAGTTGGCTGGATGAAGGAGGACAGGTGTGAGCTGACAAGGAAAATCTTGTGATTTTTGTTGGCAGATGAATGTAAAAGTGTTGATGTACCTCCCTTGTAAGGAGATAGAAAGGTAGAGAGCAGACAGATGCATGCatggatgaatgcatgtatggatggaaggatggatggacggacggacggacggac----ggatgga----------------------tggatggatggatggatggatgaatggatggatggatggatgaatggatggatggatggatgTTCATTTtctgtgtgtgtttctatcgctgttctgcctttctgttttgtctctggctctgtctgtgtctGCCATTGTCCCTTCACAATCGTACCTTCATTATT-TCAGTAACATCTTTTACCTGGTCTTACAGGATCTTGCCTGTGTTGTATTAGTAGTCACAGGACAGAAAAAGGAAAGAAGTCTGTGGAAAACAAAATAAGGGAAACAGATGCTTCAGACATGGGGCAGTGGGAGGATGTGTGGACCTGAGGCCCCCAGGCAGACAGGGGCTGCGCCTCACTGCAGAGTCAATCCTGCTGAACACAGAGGGGAAAAGCGCTCAGACAGCCGTGCCCGTGCTGATCAGAAGGGAGGGCTGCGCCTCCAGATCCTTCTCCTTGTG-TTCTTCAGGGCCCAGCCCTGGGAGTTCCAGGGTCCCACTTTCTGAGTTAGGACCTCAAGGCCCTATCAGAGTCCAGCCCCAGGAAGCCTGCAGTCATAGCACTGAGCTAGTCCGA
i macNem1.NW_012012100v1   I 4183 C 0
s cerAty1.NW_012002535v1     749229 792 -    863181 AGTGCATCACAGAGGTCTGTTACTGTTCCGACCCCAAAGCTCAGCAGCCTGTGCGGCACGTGGCAAGACCTCAGCAAATACATCAGTTGGCTGGATGAAGGAGGACAGGTGTGAGCTGACAAGGAAAATCTTGTGATTTTTGTTGGCGGATGAATGTAAAAGTGTTGATGTACCTCCCTTGTAAGGAGATAGAAAGGTAGAGAGCAGACAGATGCATGCatggatgaatgcatgtatggatggaaggatggatggatggac--------------------------------------------------------------------------ggacggatggatggatggatggatggatagatgTTCACTTtctgtgtgtgtttctatcgctgttctgcctttctgttttgtctctggctctgtctgtgtctGCCATTGTCCCTTCACAATCGTGCCTTCATTATT-TCAGTAACATCTTTTACCTGGTCTTACAGGATCTTGCCTGTGTTGTATTAGTAGTCACAGGACAGAAAAAGGAAAGAAGTCTGTGGAAAACAAAATAAGGGAAACAGATGCTTCGGACATGGGGCAGTGGGAGGATGTGTGGACCTGAGGCCCCCAGGGAGACAGGGGCTGCACCTCACTGCAGAGTCAATCCTGCTGAACACAGAGGGGAAAAGCGCTCAGACAGCCGTGTCCGTGCTGATCAGAAGGGAGGGCTGCGCCTCCAGATCCTTCTCCTTGTG-TTCTTCAGGGCCCAGCCCTGGGAGTTCCAGGGTCCCACTTTCTGAGTTAGGACCTCAAGGCCCTATCAGAGTCCAGCCCCAGGAAGCCTGCAGTCATAGCACTGGGCTAGTCCGA
i cerAty1.NW_012002535v1   I 4809 C 0
s chlSab2.chr17            29884646 812 -  71996105 AGTGCATCACAGAGGTCTGTTACTGTTCCGACCCCAAAGCTCAGCACCCCATGCAGCACATGGCAAGACCTCAGCAAATACATCAGTTGGCTGGATGAAGGAGGACAGGTGTGAGCTGACAAGGAAAATCTTGTGATTTTTGTTGGCGGATGAATGTAAAAGTGTTGATGTACCTCCCTTGTAAGGAGATAGAAAGGTAGAGAGCAGACAGACGCAAGCATGGATGAATGCACGTatggatggaaggatggatggacagac--------------------------------------------------ggacggacggacggacggatggatggatggatggatggatggatggatggatggatgTTCATTTtctgtgtgtgtttctatcgctgttctgcctttctgttttgtctctggc----tctgtgtctgccattgtccctTCACAATCGTGTCTTCATTATT-TCAGTAACATCTTTTACCTGGTCTTACAGGATCTTGCCTGTGTTGTATTAGTAGTCACAGGACAGAAAAAGGAAAGAAGTCTGTGGAAAACAAAATAAGGGAAACAGATGCTTCGGACATGGGGCAGTGGGAGGATGTGTGGACCTGAGGCCCCCAGGGAGACAGGGGCTGCACCTCACTGCAGAGTCAATCCTGCTGAACACAGAGGGGAAAAGCGCTCAGACAGCCGTGCCCGTGCTGATCAGAAGAGAGGGCTGCGCCTCCAGATCCTTCTCCTTGTG-TTCTTCAGGGCCCAGCCCTGGGAGTTCCAGGGTCCCACTTTCTGAGTTAGGACCTCAAGGCCCTATCAGAGTCCAGCCCCAGGAAGCCTGCAGTCATAGCACTGGGCTAGTCCGA
i chlSab2.chr17            I 4196 C 0
s manLeu1.NW_012107142v1     658496 792 -    735854 AGTGCATCACAGAGGTCTGTTACTGTTCCGACCCCAAAGCTCAGCAGCCTGTGCGGCACGTGGCAAGACCTCAGCAAATACATCAGTTGGCTGGATGAAGGAGGACAGGTGTGAGCTGACAAGGAAAATCTTGTGATTTTTGTTGGCGGATGAATGTAAAAGTGTTGATGTACCTCCCTTGTAAGGAGATAGAAAGGTAGAGAGCAGACAGATGCATGCatggatgaatgcatgtatggatggaaggatggatggatggac--------------------------------------------------ggac------------------------ggatggatggatggatggatggatagatgTTCACTTtctgtgtgtgtttctatcgctgttctgcctttctgttttgtctctggctctgtctgtgtctGCCATTGTCCCTTCACAATCGTGCCTTCATTATT-TCAGTAACATCTTTTACCTGGTCTTACAGGATCTTGCCTGTGTTGTATTAGTAGTCACAGGACAGAAAAAGGAAAGAAGTCTGTGGAAAACAAAATAAGGGAAACAGATGCTTCGGACATGGGGCAGTGGGAGGATGTGTGGACCTGAGGCCCCCAGGGAGACAGGGGCTGCACCTCACTGCAGAGTCAATCCTGCTGAACACAGAGGGGAAAAGCGCTCAGACAGCCGTGCCCGTGCTGATCAGAAGGGAGGGCTGCGCCTCCAGATCCTTCTCCTTGTG-TTCTTCAGGGCCCAGCCCTGGGAGTTCCAGGGTCCCACTTTCTGAGTTAGGACCTCAAGGCCCTATCAGAGTCCAGCCCCAGGAAGCCTGCAGTCATAGCACTGAGCTAGTCCGA
i manLeu1.NW_012107142v1   I 4122 C 0
s colAng1.NW_012115577v1     542238 793 -   1829203 AGTGCATCACAGAGGTCTGTTACTGTTCCGACCCCAAAGCTCAGCACCCAGTGCGGCACATGGCAAGACCTCAGCAAATACATCAGTTGGCTGGATGAAGGAGGACAGGTGTGAGCCGACAAGGAAAATCTTGTGATTTTTGTTGGCGGATGAATGTAAAAGTGTTGATGTACCTCCCTTGTAAGGAGATAGAAAGGTAGAGAGCAGACAGATGCATGCatggatgaatgcatagatggatggaaggatggatggatggat--------------------------------------------------------------------------ggatggatggatggatggatggatggatggatgTTCATtttctgtgtgtgtttctatctctgttctgcctttctgttttgtctctagctctgtctgtatctgCCATTGTCCCTTCACAATCGTGCCTTCATTATTATCAGTAACATCTTTTACCTGGTCTTACAGGATCTTGCCTGTGTTGTATTAGTAGTCACAGGACAGAAAAAGGAAAGAAGGCTGTGGAAAACAAAGTAAGGGAAACAGATGCTTCTGACATGGGGCAGTGGGAGGATGTGTGGACCTGAGGCCCCCATGGAGACAGGGGCTGCGCCTCACTGCAGAGTCAATCCTGCTGAACACAGAGGGGAAAAGCGCTCAGACAGCCGTGCCCGTGCTGATCAGAAGGGAGGGCTGCACCTCCAGATCCTTCTCCCTGTG-TTCTTCAGGGCCCAGCCCTGGGAGTTCCAGGGTCCCACTTTCTGAGTTAGGACCTCAAGGCCCTATCAGAGTCCAGCCCCAGGAAGCCTGCAGTCATAGCACTGGGCTAGTCCGA
i colAng1.NW_012115577v1   C 0 C 0
e saiBol1.JH378128         25240146 14152 -  25516302 I
e otoGar3.GL873550         18203763   0 -  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e nomLeu3.chr1a            47781820   5 - 122973662 I
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=3610236.000000
s hg38.chr6_GL000254v2_alt  1740630 978 +   4827813 GTTGCTGCTATGAAAAGGGATTTGAAAATTCCCAGAGGAGCCTTTCAGCCTCTTTCCATGGCTCTTTATGCCCTTTCAAAGGCACAGCCAGAGACATCAGAAATGAAATTGTATATAATTATATGGACTTTTCGACAATCATTGAAATTTCTGTAAGTGCC--AGTTATA-TTTTGGCAACCCCATCAAAGCCAGGTGTGCCCAGGGCAGTCAGCTCAGGCCCTGGCCTCTCATTCAG--GTTGGATTCTATAAGAACCGCATTCGCGGTGAGAATTCTAGAGCCAGATCTTGCTGCTCCACAATTGCCTCACGTTGCAAGACAAGCAAATCTAGCCTGAGT-CTGTGGATTCCAGGGCTGCTTAGGAGGAACCTGCATTCCCGCGTGGATGACCTCAGGCTCCGCC-CCTTCTGCCCCACTCAGCCCTC-ACCCAGTGCCTGAGAGCGCTCAATCAGAATGCGAGAGCAGCGCGGCGGCGCCCCCGTGTGGCCACAGGGACGAGGACAGAGGACCGGACCCCGCTCCCCTTTCTCACCAACCAGGACCTCCGAGGCTCTCCCTCTGCTCCCAGCACCTGGACAGGGCTCTGCACTCAAGGA-GCCTCCGGGTCTCAAGTCAGGCTCTGAGTCCATTCAGCTTCCCAAAATCCATGTTGACAATGACATTTCCTCTCACCACTGAGTGACTGGACTTTTGCCTCAGAGCAGAGAGAGGCCTCCAGGGCAAAACAGTGGGATCAGATGTGGGGATGACACACCCC-CAAATCCTTGCTGCCACAGGACCCAGTCCCTCAGCCTCCA-GATGGGGCCTTGGCCTCCCGTCCCCTCCTTTGTTCCTGCTGC------------TAGAGGCTGCTCATCCCAGGAATCAGCCTGTTAGCCTCCAACCCTGGGGTCCAGGGACAGCAGCTCCTAGTGCCTCGGTCCAGGAAGAAGGGAACCTCCagagagcagaagagagaagaaatggatcataagagaaggggg
s gorGor5.CYUI01015528v1     553994 971 +   2037526 GTTACTGCTATGAAAAGGGATTTGAAAATTCCCAGAGGAGCCTTTCAGCCTCTTTCCATGGCTCTTTATGCCCTTTCAAAGGCACAGCCAGAGACATCAGAAATGAAATTGTATATAATTATATGGACTTTTCGACAATCATTGAAATTTCTGTAAGTGCC--AGTTACA-TTCTGGCAACCCCATCAAAGCCAGGTGTGCCCAGGGCAGTCAGCTCAGGCCCTGGACTCTCATTCAG--GTTGGATTCTATAAGAACCGCATTCGCGGTGAGATTTCTAGAGCCAGATCTTGCTGCTCCACAATTGCCTCACGTTGCAAGACAAGCAAATCTAGCCTGAGT-CTGTGGATTCCAGGGCTGCTTAGGAGGAACCTCCATTCCCGCGTGGATGACCTCAGGCTCCG-C-CCTTCTGCCCCACTCAGCCCTC-ATCCAGTGCCTGAGAGCGCTCAATCAGAATGCGAGAGCAGCGCGGCGGCGCCCCCATGTGGCCACAGGGACGAGGACAGAGGACCGGACCCCGCT-CCCTTTCTCACCAACCAGGACCTCCGAGGCTCTCCCTCTGCT-CCAGCGCCTGGACAGGGCTCTGCACTCAAGGA-GCCTCCGAGTCTCAAGTCAGGCTCTGACTCCATTCAGCTTCCCAAAATCCATGTTGACAATGACATTTCCTCTCACCACTGAGTGACTGGACTTTTGCCTCAGAGCAGAGAGAGGCCTCCAGGGCAAAACAGTGGGATCAGATGT-GGGATGACACA-CCC-CAAATCCTTGCTG-CACAGGACCCAGTCCCTCAGCCTCCA-GATGGGGCCTTGGCCTCCCGTCCCCTCCTTTGTTCCTGCTGC------------TAGAGGCTGCTCAT-CCAGGAATCAGCCTGTTAGCCTCCAACCCTGGGGTCCAGGGACAGCAGTTCCTAGTGCCTCGGTCCAGGAAGAAGGGAACCTCCAGAGAGCAGAAGAGAGAAGAAATGGATCATAAGAGAAGGGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31102199 985 + 172585720 GTTACTGCCATGAAAAGGGATTTGATAATTCCCAGAGGAGCCTTTCAGCCTCTTTCCATGGTTGTTTCTGCCCTTTCAAAGGCACAGCCAGAGACACCAGAAATGAAATTGTGTATAATTATATGGACTTTTCGACAATCATTGAAATTTCTGTAAGCCCC--AGTTACA-TTTTGGCAACCCCATCAAAGCCAGGTGCGCCCAGGGCAGTCAGCTCAGGCCCTGGACTCTCATTCAGATATTGGATTCTATGAGAACCGTATTCGCGGTGAGAATTCTAGAGCCAGATCTTGCTACTCCACAATTGCCTCACGTTGCAAGACAAGCAAATCTAGCCTGAGT-CTCCAGATTCCAGGGCTGCCTAGGAGGAACTTCCATTCCCGCGTGGATGACCTCAGGCTCCG-A-ACCCCTGCCCCACTCAGTCCTC-ACCCAGTGCTCGAGTGCTCTCAATCAGCATCCGAGAGCAGCGCAGCGGCGCCCCCGTGTGGCCACAGAGCCGAGGACAGA-----GGATCCCGCTCCCCTTTCTCACCAGCCGGGACCTCCAAGGCTCTCCCTCTCCTCCCAGCACCTGGACAGGGCTCTGCACGCAAGGG-GCCTCCGGGTCTCAAGTCAGGCTCTGAGTCCATTCGGCTTCCCAAAATCCATGTTGACAATGACATTTCCTCTCACCACTGAGTGAATGGACTTTTGCCTCAGGGCAGAGAGAGGCCTCCAGGGCAAAACAATGGGATCAGATCTGGGGATGACCCA-CTC-CAAACCCTTGCTACCACAGAACCCAGTCTCTCAGCCACCA-GATGGGGCCTTGGCCTCCCGTCCCCTCGTTTGTTCCTGCTGCTGTTCCTGCAGGTGGAGGCTGCTCATCCCAGGGATCAGCCTGTGAGCCTCCAACCCTGGGGTCTGGGGACAGCAGCTCCTGGTGCCTCCGTCCaggaagaagggagcctccagagagcagaagggagaaaaaatggatcaagggagaaggggg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30394255 983 - 170955103 GTTACTGCCATGAAAAGGGATTTGATAATTCCCAGAGGAGCCTTTCAGCCTCTTTCCATGGTTGTTTCTGCCCTTTCAAAGGCACAGCCAGAGACATCAGAAATGAAATTGTGTATAATTATATGGACTTTTCGACAATCATTGAAATTTCTGTAAGCCCC--AGTTACA-TTTTGGCAACCCCATCAAAGCCAGGTGTGCCCAGGGCAGTCAGCTCAGGCCCTGGACTCTCATTCAG--ATTGGATTCTATGAGAACCGTATTCGCGGTGAGAATTCTAGAGCCAGATCTTGCTACTCCACAATTGCCTCACGTTGCAAGACAAGCAAATCTAGCCTGAGT-CTCCAGATTCCAGGGCTGCCTAGGAGGAACTTCCATTCCCGCGTGGATGACCTCAGGCTCCG-A-ACCCCTGCCCCACTCAGTCCTC-ACCCAGTGCTCGAGTGCTCTCAATCAGAATCCGAGAGCAGCGCAGCGGCGCCCCCGTGTGGCCACAGAGCCGAGGACAGA-----GGATCCCGCTCCCCTTTCTCACCAGCCGGGACCTCCAAGGCTCTCCCTCTCCTCCCAGCACCTGGACAGGGCTCTGCACGCAAGGG-GCCTCCGGGTCTCAAGTCAGGCTCTGAGTCCATTCGGCTTCCCAAAATCCATGTTGACAATGACATTTCCTCTCACCACTGAGTGAATGGACTTTTGCCTCAGGGCAGAGAGAGGCCTCCAGGGCAAAACAATGGGATCAGATCTGGGGATGACCCA-CCC-CAAACCCTTGCTACCACAGAACCCAGTCTCTCAGCCACCA-GATGGGGCCTTGGCCTCCCGTCCCCTCCTTTGTTCCTGCTGCTGTTCCTGCAGGTGGAGGCTGCTCATCCCAGGGATCAGCCTGTGAGCCTCCAACCCTGGGGTCCGGGGACAGCAGCTCCTGGTGCCTCCGTCCaggaagaagggagcctccagagagcagaagggagaaaaaatggatcaagggagaaggggg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     648879 983 +   1495729 GTTACTGCCATGAAAAGGGATTTGATAATTCCCAGAGGAGCCTTTCAGCCTCTTTCCATGGTTGTTTCTGCCCTTTCAAAGGCACAGCCAGAGACACCAGAAATGAAATTGTGTATAATTATATGGACTTTTCGACAATCATTGAAATTTCTGTAAGCCCC--AGTTACA-TTTTGGCAACCCCATCAAAGCCAGGTGTGCCCAGGGCAGTCAGCTCAGGCCCTGGACTCTCATTCAG--ATTGGATTCTATGAGAACCGTATTCGCGGTGAGAATTCTAGAGCCAGATCTTGCTACTCCACAATTGCCTCACGTTGCAAGACAAGCAAATCTAGCCTGAGT-CTCCAGATTCCAGGGCTGCATAGGAGGAACTTCCATTCCCGCGTGGATGACCTCAGGCTCCG-A-ACCCCTGCCCCACTCAGTCCTC-ACCCAGTGCTCGAGTGCTCTCAATCAGAATCCGAGAGCAGCGCAGCGGCGCCCCCGTGTGGCCACAGAGCCGAGGACAGA-----GGATCCCGCTCCCCTTTCTCACCAGCCGGGACCTCCAAGGCTCTTCCTCTCCTCCCAGCACCTGGACAGGGCTCTGCACGCAAGGG-GCCTCCGGGTCTCAAGTCAGGCTCTGAGTCCATTCGGCTTCCCAAAATCCATGTTGACAATGACATTTCCTCTCACCACTGAGTGAATGGACTTTTGCCTCAGGGCAGAGAGAGGCCTCCAGGGCAAAACAATGGGATCAGATCTGGGGATGACCCA-CCC-CAAACCCTTGCTACCACAGAACCCAGTCTCTCAGCCACCA-GATGGGGCCTTGGCCTCCCGTCCCCTCCTTTGTTCCTGCTGCTGTTCCTGCAGGTGGAGGCTGCTCATCCCAGGGATCAGCCTGTGAGCCTCCAACCTTGGGGTCCGGGGACAGCAGCTCCTGGTGCCTCCGTCCaggaagaagggagcctccagagagcagaagggagaaaaaatggatcaagggagaaggggg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     750021 983 -    863181 GTTCCTGCCATGAAAAGGGATTTGATAATTCCCAGAGGAGCCTTTCAGCTTCTTTCCATGGCTGTTTCTGCCCTTTCAAAGGCACAGCCAGAGACATCAGAAATGAAATTGTGTATAATTATATGGACTTTTCGACAATCATTGCAATTTCTGTAAGCCCC--AGTTACA-TTTTGGCAACCCCATCAAAGCCAGGTGTGCCCAGGGCAGTCAACTCAGGCCCTGGACTCTCATTCAG--ATTGGATTCTATGAGAACCGTCTTCGCGGTGAGAATTCTAGAGCCAGATCTTGCTTCTCCACAATTGCCTCACGTTGCAAGACAAGCAGATCTAGCCTGAGT-CTGCGGATTCCAGGGCTGCTTAGGAGGAACTTCCATTCCCGCGTGGATGACCTCAGGCTCCG-A-CCCTCTGCCCCGCTCAGTCCTC-ACCCAGTGCTGGAGTGCTCTCAGTCAGAATCCGAGAGCAGCGCAGCGGCGCCCCCGTGTGGCCACAGGGCCGAGGACGGA-----GGATCCCGCTCCCCTTTCTCACCAGCCCGGACCTCCAAGGCTCTCCCTGTGCTCCCAGCACCTGGACAGGGCTCTGCACGCAAGGG-GCCTCCGGGTCTCAAGTCAGGCTCTGAGTCCATTCGGCTTCCCAAAATCCATGTTGACAATGACATTTCCTCTCACCACTGAGTGAATGGACTTTTGCCTCAGGGCAGAGAGAGGCCTCCAGGGCAAAACAGTGGGATCAGATCTGGGGATGACCCA-CCC-CAAACCCTTGCTACCACAGGACCCAGTCTCTCAGCCACCA-GGTGGGGCCTTGGCCTCCCGTCCCCTCCTTTGTTCCTGCTGCTGTTCCTGCAGGTGGAGGCTGCTCATCCCAGGGATCAGCCTGTGAGCCTCCAACCCTGGGGTCCGGGGACAGCAGCTCCTGGTGCCTCCGTCCaggaagaagggagcctccagagagcagaagggagaaaaaatggatcacgggagaagaggg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29885458 984 -  71996105 GTTACTGCCATGAAAAGGGATTTGATAATTCCCAGAGGAGCCTTTCAGCCTCTTTCCATGGCTGTTTCTGCCCTTTCAAAGGCACAGCCAGAGACATCAGAAATGAAATTGTGTATAATTATATGGACTTTTCGACAATCATTGAAATTTCTGTAAGCCCC--AGTTACA-TTTTGGCAACCCCATCAAAGCCAGGTGTGCCCAGGGCAGTCAACTCAGGCCCTGGACTCTCATTCAG--ATTGGATTCTATGAGAACCGTATTCGCGGTGAGAATTCTAGAGCCAGATCTTGCTTCTCCACAATTGCCTCACGTTGCAAGACAAGCAAATCTAGCCTGAGT-CTGCGGATTCCAGAGCTGCTTAGGAGGAACCTCCATTCCCGCGTGGATGACCTCAGGCTCCG-ACCCCCCTGCCCCACTCAGCCCTC-ACCCAATACCCGAGAGCGCTCAGTCAGAATCCGAGAGCAGCGCGGCGGCGCCCCCGTGTGGCCACAGGGCCGAGGACAGA-----GGATCCCGCTCCCCTTTCTCACCAGCCGGGACCTCCAAGGCTCTCCCTCTGCTCCCAGCACCTGGACAGGGCTCTGCACATAAGGG-GCCTCTGGGTCTCAAGTCAGGCTCTGAGTCCATTCAGCTTCCCAAAATCCATGTTGACGATGACATTTCCTCTCACCACTGAGTGAATGGACTTTTGCCTCAGGGAAGAGAGAGGCCTCCAGGGCAAAACAGTGGGATCAGATTTGGGGATGACCCA-CCC-CAAACCCTTGCTACCACAGGACCCAGTCTCTCAGCCACCA-GATGGGGCCTTGGCCTCCCGTCCCCTCGTTTGTTCCTGCTGCTGTTCCTGCAGGTGGAGGCTGCTCATCCCAGGGATCAGCCTGTGAGCCTCCAACCCTGGGGTCCGGGGACAGCAGCTCCTGGTGCCTCCGTCCAGGAAGAAAGGAGCCTCCAGAGAGCAGAAGGGAGAAAAAATGGATCACAGGAGAAGAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     659288 983 -    735854 GTTACTGCCATGAAAAGGGATTTGATAATTCCCAGAGGGGCCTTTCAGCTTCTTTCCATGGCTGTTTCTGCCCTTTCAAAGGCACAGCCAGAGACATCAGAAATGAAATTGTGTATAATTATATGGACTTTTCGACAATCATTGCAATTTCTGTAAGCCCC--AGTTACA-TTTTGGCAACCCCATCAAAGCCAGGTGTGCCCAGGGCAGTCAACTCAGGCCCTGGACTCTCATTCAG--ATTGGATTCTATGAGAATCGTATTCGCGGTGAGAATTCTAGAGCCAGATCTTGCTTCTCCACAATTGCCTCACGTTGCAAGACAAGCAAATCTAGCCTGAGT-CTGCGGATTCCAGGGCTGCTTAGGAGGAACTTCCATTCCCGCGTGGATGACCTCAGGCTCCA-A-ACCTCTGCCCCGCTCAGTCCTC-ACCCAGTGCTCGAGTGCTCTCAATCAGAATCCGAGAGCAGCGCAGCGGCGCCCCCGTGTGGCCACAGAGCCGAGGACAGA-----GGATCCCGCTCCCCTTTCTCACCAGCCGGGACCTCCAAGGCTCTCCCTGTCCTACCAGCACCTGGACAGGGCTCTGCACGCAAGGG-GCCTCCGGGTCTCAAGTCAGGCTCTGAGTCCATTCGGCTTCCCAAAATCCATGTTGACAATGACATTTCCTCTCACCACTGAGTGAATGGACTTTTGCCTCAGGGCAGAGAGAGGCCTCCAGGGCAAAACAGTGGGATCAGATCTGGGGATGACCCA-CCC-CAAACCCTTGCTACCACAGGACCCAGTCTCTCAGCCACCA-GGTGGGGCCTTGGCCTCCCGTCCCCTCCTTTGTTCCTGCTGCTGTTCCTGCAGGTGGAGGCTGCTCATCCCAGGGATCAGCCTGTGAGCCTCCAACCCTGGGGTCCGGGGACAGCAGCTCCTGGTGCCTCCGTCCAGGAAGAAGCGAGCCTCCAGAGAGCAGAAGGGAGAAAAAATGGATCACGGGAGAAGGGGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     543031 984 -   1829203 GTTACTGCTATGAAAAGGGATTTGATAATTCCCAGAGGAGCCTTTCAGCCTTTTTCCATGGCTGTTTCTGCCCTTTCAAAGGCACAGTCAGAGACATCAGAAATGAAATTGTATATAATTATATGGACTTTTCGACAATCATTGAAATTTCTGTAAGCGCC--AGTTACA-TTTTGGCAACCCCATCAAAGCCAGGTGTGCCCAAGGCAGTCAACTCAGGCCCTGGACTCTCATTCAG--ATTGGATTCTATGAGAACCGTATTCGCGGTGAGAATTCTAGAGCCAGATCTTGTTACTTCACAATTGCCTCACGTTGCAAGACAAGCAAATCTAGCCTGAGT-CTGCGGATTCCAGGGCTGCTTAGGAGGAACCTCCATTCCCGCGTGGATGACCTCAGGCTCCG-ACCCCCCTGCCCCTCTCAGCCCTC-ACCCAGTGCTCGAGAGCTCTCAATCAGAATCCGCGAGCAGCGCGGCGGCGCCCCCGTGTGGCCACAGGGCCGAGGACAGA-----GGACCCCGCTCCCCTTTCTTAGCAGCCGGGACCTCCAAGGCTCTCCCTCTGCTCCCAGCACCTGGACAGGGCTCTGCACACAAGCG-GCCTCTGGGTCTCAAGTCAGGCTCTGAGTCCATTCAGCTTCCCAAAATCCATGTTGACAATGACATTTCCTCTCACCACTGAGTGAATGGACTTTTGCCTCAGGGCAGAGAGAGGCCTCCAGGGCAAAACAGTGGGATCAGATCTGGGGATGACCCA-CCC-CAAACCCTTGCTACCACAGGACCCAGTCTCTCAGGCACCA-GATGGGGCCTTGGCCTCCCGTCCCCTCCTTTGTTCCTGCTGCTGTTCCTGCAGGTGGAGGCTGCTCATCCCAGCCATCAGTCTGTGAGCCTCCAACCCTGGGGTCCGGGGACAGCAGCTCCTGGTGCCTCCGTCCAGGAAGAAGGGAGCCTCCAGAGAGCAGAAGGGAGAAAAAATGGATCACAGGAGAAGGGGG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128         25254298 956 -  25516302 GTTACTGCTATGAAAAAGGACTTCAGAATTCCCAGAGGAGTCTTTCAGCCTCTTTCCATGGCTCTTTCTGCCCTTTCAAA-GCACAGTCAGAGACATCAGAAGTGAAATTGTACACAAGTATTTGGTGTTTTCGACAATCATTGAAATTTCGGCAATTGCCAAAGTTACGTTTTTGGCAACTCCATCAAAGCTGAGTGTGCCCAGGACAGTCAACTCAGGCCCTGGACTCTCATTCTG--GTTGGATTCTATGAGAACAGTATTCATCATAAGAATTCTAGATCCAGATCCTGCTACTCCACAATTGCCTCATGCTGAAAGACAAGCAAATCTAGCCTGAGTCCTGTAGATTCCAGGGCTGCTCAGGAGGAACCTCCA-TCCTGGATGGATAACCT-AGGCTCAG-C-TCCCTCTGCCCACTCAGCCTGCAACCTCGTACTGGAGAGTGCTCAGTCAGAATCCAAAAGCAGCATGGCGCTGTCCCAGTGTAGCCATAGGATCCAGGACAGA-----GGACCACGCTACCCTCTCTCCCCAGCCAGGACCGCCAAGGCTCTCCCTCTGCACCCAGCACCTGGACAGGGCTCTGCACACAAGGGAACCTCCGGGTCTCGAGTCAGGCTCTGAGTCCATCCAGCTTCCCAAAATCCATGTTGATATGACCGTTTTCTCCTGCAAC----TGACTGCACTTTCATCTCAGGGCAGAGAGAGGTTTCCAGGGCAAAACA---GGATCAGGTCTGGGGTTGACCCA-CCCTCAAACCCTTGTTACCAGAAGACCTAGTCCCTCAGCCTCCAGGATGAGACCTTGGCCTCCTGTCCTGTCCCTTGTTCCTGCCGCTGCTTCTGCAAGTGGAGGCTACTCATCCCAGGAATCAG---------------CCCTGGCGTCCAGGGAGAGCA---------GCCTCGGTCCAGGAGTCAGGGAGGCTCCAGGGAGCAGAAG-GAGAAGAAATGGATCATAAGAGAAGAAGG
i saiBol1.JH378128         I 14152 I 270
e otoGar3.GL873550         18203763   0 -  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e nomLeu3.chr1a            47781820   5 - 122973662 I
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=20904.000000
s hg38.chr6_GL000254v2_alt  1741608 11 +   4827813 caaggggggag
s gorGor5.CYUI01015528v1     554965 11 +   2037526 CAAGGGGGGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31103184 10 + 172585720 t-ggggggaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30395238 10 - 170955103 t-ggggggaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     649862 10 +   1495729 t-ggggggaag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     751004 11 -    863181 caagggggaag
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29886442 11 -  71996105 CAGGGGGGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     660271 10 -    735854 T-GGGGGGAAG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     544015 11 -   1829203 CAGGGGGGAAG
i colAng1.NW_012115577v1   C 0 C 0
e saiBol1.JH378128         25255254 270 -  25516302 I
e otoGar3.GL873550         18203763  0 -  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e nomLeu3.chr1a            47781820  5 - 122973662 I
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=308906.000000
s hg38.chr6_GL000254v2_alt  1741619  98 +   4827813 aaagagagtgaaaggagccagggaggagagaAAAATGGAAAACATCCTGTTAGGA-----Atgtgtgtgtttgtgttgatgtgtgtg----------------cgtgcaggtgtgtgtA--
s gorGor5.CYUI01015528v1     554976  98 +   2037526 GAAGAGAGTGAAAGGAGCCAGGGAGGAGAGAAAAATGGAAAACATCCTGTTAGAA-----Atgtgtgtgttcgtgttgatgtgtgtg----------------tgtgcaggtgtgtgtA--
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31103194  98 + 172585720 gaagagaatgaaaggagccagggaggagagaaaaatggaaAACATTCTATTAGGA-----gtgtgtgtgtgtgtgtgtgtatgtgtg----------------tgtgtatgtgtgtgta--
i rheMac8.chr4             C 0 I 25
s macFas5.chr4             30395248 114 - 170955103 gaagagaatgaaaggagccagggaggagagaaaaATGGAAAACATTCTATTAGGA-----gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtg--
i macFas5.chr4             C 0 I 4
s macNem1.NW_012012100v1     649872  98 +   1495729 gaagagaatgaaaggagccagggaggagagaaaaatggaaAACATTCTATTAGGA-----gtgtgtgtgtgtgtgtgtgtgtgtgtg----------------tgtgtgtgtgtgtgtg--
i macNem1.NW_012012100v1   C 0 I 4
s cerAty1.NW_012002535v1     751015 114 -    863181 gaagagagtgaaaggagacagggaggggagaaAAATGGAAAACATCCTATTAGGA-----gtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgcgtgtatgtgtgtgtA--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29886453  96 -  71996105 GAAGAGAGTGAAAGGAGCCAGGGAGGGGAGAAAAATGGAAAACATTCTATTAGGA-----gtgtgtgtgtgtgtgtgtgtgtgtgtg----------------tgtgtgtgtgtgtA----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     660281  96 -    735854 GAAGAGAATGAAAGGAGCCAGGGAGGAGAGAAAAATGGAAAACATTCTATTAGGA-----gtgtgtgtgtgtgtgtgtgtgtgtgtg----------------tgtgtgtatgtgtg----
i manLeu1.NW_012107142v1   C 0 I 19
s colAng1.NW_012115577v1     544026  88 -   1829203 GAAGAGAGTGAAAGGAGCCAGGGAGGGGAGAAAAATGGAAAACATCCTATTAGGA-----gtgtgtgtgtgcgtgtgtgtgtgtgtg----------------tgtgtA------------
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128         25255524 100 -  25516302 aagaagagt-----gagtcagggaggagagaaaaatgggaagCATTCCTTTAGAAAGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtg----------------tgtgtgtgtgtgtgtATA
i saiBol1.JH378128         I 270 C 0
e otoGar3.GL873550         18203763   0 -  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e nomLeu3.chr1a            47781820   5 - 122973662 I
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=2348.000000
s hg38.chr6_GL000254v2_alt  1741717 7 +   4827813 GAGTGGG-
s gorGor5.CYUI01015528v1     555074 7 +   2037526 GAGCGGA-
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             30395366 6 - 170955103 GACCAG--
i macFas5.chr4             I 4 C 0
s macNem1.NW_012012100v1     649974 6 +   1495729 GACCAG--
i macNem1.NW_012012100v1   I 4 C 0
s cerAty1.NW_012002535v1     751129 6 -    863181 GACCAG--
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29886549 6 -  71996105 GACCAG--
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     544114 6 -   1829203 GACCAG--
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128         25255624 7 -  25516302 GAGCAG-G
i saiBol1.JH378128         C 0 C 0
e otoGar3.GL873550         18203763 0 -  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1     660377 19 -    735854 I
e rheMac8.chr4             31103292 25 + 172585720 I
e nomLeu3.chr1a            47781820 5 - 122973662 I
e panPan2.chr6             31028995 0 + 173848474 C
e panTro5.chr6             30604965 0 + 175400573 C

a score=4938198.000000
s hg38.chr6_GL000254v2_alt  1741724 1413 +   4827813 AGAGAGTTTCTAGGGTTCTGAGGAGAAGAGAGCTGCTATACAGGTGCTAAGGGGCCCAGCCCTGGGAATTTCAGGGTCCCGCTTTCTGAGCTAGGATCTTAAGGCCCTATCAGAGTCCACCCCCAGGAAGCCTGCAGTCATAGCACTGGGCTAGCTGGACGGCTGCCTCTTCTTTGCCTTTGACAGCAGGAGCTGCCATGCCAGGCCCAGGGGCCCT-GGGGTCATGGGCAGAGAGCAGGTCCCTCTGCTGGCAGCCAAGGAGATGTTGTTCTTGGA---------------------------------------------GG----GTCAAAGACTTACTTAGCTGG---------------------------------------------GAGTCTGAAGGTGGTCATGGGTTACAAAGGGGTTACAAAGAGCTCAGCGGTGAGCCTGGCCCAAGCTTCTGACCCCTTTCTTTGGATCTCAAGGGCTG-ACCATG---GATTCTCAATGGATCTCAAGAATTCGCCCATTTACCTCTTGCCC--------CAGACCCT------CCCCACTTCGATACCCTGGGACCCAGGCATCTGCCTCTTTCCTTCCCCTCCGGCCTCCCAAGCACCTCCAGGCCCTGCTCTCTGCCAACC--------TGAACTCCAGGACCCTGCAGCCCCACCCCAAAattgcttgataatacagtgattctattttcagtgttttgaaaactctctatactgttttttacagttgctgtactagttt-------tatacactgtgtgtaagagtgcccttttctccacgtcctca-caaacatctatttgtttgtttgt------------ttgt-------ttttgtctttttagttgtacccattctatctgggggtaagatgatatctcattgtggttttgatttgcatttccctgatgataagtgatgttgagcatttttcatgtacctgctggccatttgtgtgtcttcttttgagaaatgtctattcatgtcgtttgtccactttttaatagaattttttg-----gtttttttagctcttgagtt---------ccttacatattctggatattagtcccttgtcagataaattgtttgaaaatattttctcccattcaacaggttgtctgtctactcttttgatggttttctttgctgcgcagaagcgttttagtttattatagtcccatttgtcta-ttttgtttgggttgtctgtgcttctgaagtcttagccataaaatcgttacccagaccaatgtcctagaatgtttctcatatgtttgcttccagttgttttatagttttgggtcttacgtctaagtatttaatccatcttgagttgatatttatatagggtgagatatagggatctaattccattcttctgcatgtggatatccaatttccccagcaccatttattgaagagggtgtcctttccccaaatgtatgttcttggcacctttgtcaagaatcagttggctgtaaatatatggatttatttccagattctctattatgctgcattgattgacat
s gorGor5.CYUI01015528v1     555081 1401 +   2037526 AGAGAGTTTCTAGGGTTCTGAGGAGAAGAGAGCTGCTATACAGGTGCTAAGGGGCCCAGCCCTGGGAATTTCAGGGTCCCGCTTTCTGAGCTAGGATCTTAAGG-CCTATCAGAGTCCA-CCCCAGGAAGCCTGCAGTCACAGCACTGGGCTAGCTGGACGGCTGCCTCTTCTTTGCCTTTGACAGCAGGAGCTGCCATGCCAGGCCCAGGGG-CCT-GGGGTCATGGGCAGAGAGCAGGT-CCTCTGCTGGCAGCCAAGGAGATGTTGTTCTTGGA---------------------------------------------GG----GTCAAAGACTTACTTAGCTGG---------------------------------------------GAGTCTGAAGGTGGTCATGGGTTACAAAGGGGTTACAAAGAGCTCAGCGGTGAGCCTGGCCCAAGCTTCTGACCCCTTTCTTTGGATCTCAAGGGCTG-ACCATG---GATTCTCAATGGATCTCAAGAATTCGCCCATTTACCTCTTGCCC--------CAGACCCT------CCCCACTTCGATACCCTGGGA-CCAGGCATCTGCCTCTTTCCTTCTCCTCCGGCTACCCAAGCACCTCCAGGCCCTGCTCTCTGCCAACC--------TAAACTCCAGGACCCTGCAG-CCCACCCCCAAattgctagataatacagtgattctattttcagtgttttgaaaactctctatattgttttctatagttgctgtactaattt-------tacacactgtgtgtaagagtgccctttcctccacatcctca-caaacatctgtttgtttgttt-----------------t-------ttttgtctttttagtcgtacccattctatctgggggtaagatgatatctcattgtggttttgatttgcatttccctgatgattagtgatgttgagcatttttcatgtacctgctggccatttgtatgtcttcttttgagaaatgtctattcatgtcgattgtccactttttaatagaattttttg----tttttttttagcccttgagtt----------cttacatattctggatattagt-ccttgtcagataaattgtttgaaaatattttctctcattcaacaggttgtctgtctactcttttgatcgttttctttgctgtgcagaagcgttttagtttattatactcccatttgtcta-ttttgtttgggttgtctgtgcttctgaagtcttagccataaaatctttacccaggccaatgtcctagaatgtttctcatatgtttgcttccagttgttttatagttttgggtcttaggtctaagtatttaatccatcttgagttgatatttatatagggtgagatagagggatctaattccattcttctgcatatggatatccaatttccccagcaccatttattgaagagggtgtcctttccccaaatgtatgttcttggcacctttgtcaagaatcagttggctgtaaatatatggatttatttccagattctctattatgctgcattgattgacat
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31103317 1420 + 172585720 GGAGAGTTTCTAGGGTTCTGAGGAAAAGAGAGCTGCTATACAGATGCTAAGGGGCCCAGCCCTGGGAGTTTCAGGGTCCCACTTTCTTAGCTAGGATCTTAAGGCCCTATCAGAGTCCACCCCCAGGAAGCCTGCAGTCATAGCACTGGGCTAGCTGGACGGCTGCCTCTTCTTTGCCTTTGACAGCAGGAGCTGCCATGCCAGGCCCAGGGGCCCT-GGGGTCATGGGCAGAGAGCAGGTCCCTCTGCTGGCAGCCAAGGAGATGTTGTTCTTGGA---------------------------------------------GGGTGCGTCAAAGACTTACTTAGCTGG---------------------------------------------GAGTCTGAAGGTGGTCAT-----------GGGTTACAAAGAGCTCAGTGGTGAGCCTGGCCCAAGCTTCTGACCCCTTTCTTTGGATCTCAAGGGCTC-ATCATTCCCTATTCCCAATGGATCTCAAGAATTTGCCTATTTACCTCCTGCCT--------CAGACCCT------CCCCACTTTGATACCTTGGGACGCAGGCAT---CCTCTTTCCTTCTCCTCCAGCTACCCAAGCACCTCCAGGCCCTACTCTCTGCCAACC--------TGAACTCCAGGACCCTGCAGCCCCACCCCCAAattgctagataatatagtgattctatttttagtgttttgaatagtctctatactgttttctatagttgctgtactaattt-------cacacactgtgtgtaagactgcccttttcttcagatcctca-caagcatctgtttttgcttttgt------------ttttgtttctgttttgtctttttagttgtacccattctatct-ggggtaagatgatatttcattgtggttttgatttgcatttccctgatgatcagtgatgttgagcatttttcaagtacctgttgcccatttgtatgtcttcttttgagaaatgtctattcatgtcctttgtctacttctcaatagaattttttggg--tttttttttaactctcgagtt----gagttccttatatattctggatatcagtcgtttgtcagataaattgtttgaaaatattttctcccattcaagatgttgtctctctactcttttgatggttttctttgctgtgcagaagcattttagtttattatagtcccatttgtctg-ttttgtttgggttgtctgtgcttttgaagtcttagccaaaaaatctttgcccagaccaatgtcctagaatgtttctcataagttttcttccagttgttttatagttttggatcttacatctaagtgtttaatccatcttgagttgatatttatatagggtgagagacagggatctgatttcattcttctgcatatggatatccaatttccccagcaccatttattgaagagagtgtcctttccccaaatgtatgttcttggcacctttgtcaagaatcagttggctgtaaatatgtggatttattcccagattctctattatgttgcattgattgacat
i rheMac8.chr4             I 25 C 0
s macFas5.chr4             30395372 1416 - 170955103 -GAGAGTTTCTAGGGTTCTGAGGAAAAGAGAGCTGCTATACAGATGCTAAGGGGCCCAGCCCTGGGAGTTTCAGGGTCCCACTTTCTTAGCTAGGATCTTAAGGCCCTATCAGAGTCCACCCCCAGGAAGCCTGCAGTCATAGCACTGGGCTAGCTGGACGGCTGCCTCTTCTTTGCCTTTGACAGCAGGAGCTGCCATGCCAGGCCCAGGGGCCCT-GGGGTCATGGGCAGAGAGCAGGTCCCTCTGCTGGCAGCCAAGGAGATGTTGTTCTTGGA---------------------------------------------GGGTGCGTCAAAGACTTACTTAGCTGG---------------------------------------------GAGTCTGAAGGTGGTCAT-----------GGGTTACAAAGAGCTCAGCGGTGAGCCTGGCCCAAGCTTCTGACCCCTTTCTTTGGATCTCAAGGGCTC-ATCATTCCCTATTCCCAATGGATCTCAAGAATTTGCCTATTTACCTCCTGCCT--------CAGACCCT------CCCCACTTTGATACCTTGGGACCCAGGCAT---CCTCTTTCCTTCTCCTCCAGCTACCCAAGCACCTCCAGGCCCTA--CTCTGCCAACT--------TGAACTCCAGGACCCTGCAGCCCCACCCCCAAattgctagataatatagtgattctatttttagtgttttgaatagtctctatactgttttctatagttgctgtactaattt-------tacacgctgtgtgtaagagtgcccttttctccagatcctca-caagcatctgtttttgcttttga------------ttttgtttctgttttgtctttttagttgtacccattctatct-ggggtaagatgatatttcattgtggttttgatttgcatttccctgaagatcagtgatgttgagcatttttcaagtacctgttggccatttgtatgtcttcttttgagaaatgtctattcatgtcctttgtctacttctcaatagaattttttggg--tttttttttaactcttgagtt----gagttccttatatattctggatatcagtcccttgtcagataaattgtttgaaaatattttctcccattcaagatgttgtctctctactcttttggtggttttctttgctgtgcagaagcattttagtttattatagtcccatttgtctg-ttttgtttgggttgtctgtgcttttgaagtcttagccaaaaaatctttgcccagaccaatgtcctagaatgtttctcataagttttcttccagttgttttata-ttttggatcttacatctaagtgtttaatccatcttgagttgatatttatatagggtgagagacagggatctgatttcattcttctgcatatggatatccaatttccccagcaccatttattgaagagagtgtcctttccccaaatgtatgttcttggcacctttgtcaagaatcagttggctgtaaatatgtggatttatttccagattctctattatgttgcattgattgacat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     649980 1419 +   1495729 -GAGAGTTTCTAGGGTTCTGAGGAAAAGAGAGCTGCTATACAGATGCTAAGGGGCCCAGCCCTGGGAGTTTCAGGGTCCCACTTTCTTAGCTAGGATCTTAAGGCCCTATCAGAGTCCACCCCCAGGAAGCCTGCAGTCATAGCACTGGGCTAGCTGGACGGCTGCCTCTTCTTTGCCTTTGACAGCAGGAGCTGCCATGCCAGGCCCAGGGGCCCT-GGGGTCATGGGCAGAGAGCAGGTCCCTCTGCTGGCAGCCAAGGAGATGTTGTTCTTGGA---------------------------------------------GGGTGCGTCAAAGACTTACTTATCTGG---------------------------------------------GAGTCTGAAGGTGGTCAT-----------GGGTTACAAAGAGCTCAGCGGTGAGCCTGGCCCAAGCTTCTGACCCCTTTCTTTGGATCTCAAGGGCTC-ATCATTCCCTATTCCCAATGGATCTCAAGAATTTGCCTATTTACCTCCTGCCT--------CAGACCCT------CCCCACTTTGATACCTTGGGACCCAGGCAT---CCTCTTTCCTTCTCCTCCAGCTACCCAAGCACCTCCAGGCCCTACTCTCTGCCAACT--------TGAACTCCAGGACCCTGCAGCCCCACCCCCAAattgctagataatatagtgattctatttttagtgttttgaatagtctctatactgttttctatagttgctgtactaattt-------tacacgctgtgtgtaagagtgcccttttctccagatcctca-caagcatctgtttttgcttttga------------ttttgtttctgttttgtctttttagttgtacccattctatct-ggggtaagatgatatttcattgtggttttgattttcatttccctgaagatcagtgatgttgagcatttttcaagtacctgttggccatttgtatgtcttcttttgagaaatgtctattcatgtcctttgtctacttctcaatagaattttttggg-ttttttttttaactcttgagtt----gagttccttatatattctggatatcagtcccttgtcagataaattgtttgaaaatattttctcccattcaagatgttgtctctctactcttttggtggttttctttgctgtgcagaagcattttagtttattatagtcccatttgtctg-ttttgtttgggttgtctgtgcttttgaagtcttagccaaaaaatctttgcccagaccaatgtcctagaatgtttctcataagttttcttccagttgttttata-ttttggatcttacatctaagtgtttaatccatcttgagttgatatttatatagggtgagagacagggatctgatttcattcttctgcatatggatatccaatttccccagcaccatttattgaagagagtgtcctttccccaaatgtatgttcttggcacctttgtcaagaatcagttggctgtaaatatgtggatttatttccagattctctattatgttgcattgattgacat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     751135 1463 -    863181 -GAGAGTTTCTAGGGTCCTGAGGAAAAGAGAGCTGCTATACAGATGCTAA-GGGCCCAGCCCTGGGAGTTTCAGGGTCCCACTTTCTTAGCTAGGATCTTAAGGCCCTATCAGAGTCCACCCCCAGGAAGCCTGCAGTCATAGCACTGGGCTAGCTGGATGGCTGCCTCTTCTTTGCCTTTGACAGCAGGAGCTGCCAGGCCAGGCCCAGGGGCCCT-GGGGTCATGGGCAGAGAGCAGGTCCCTCTGCTGGCAGCCAAGGAGATGTTGTTCTTGGAGGGTGCGTCAAAGACTTACTTAGCTGGGAGTCTGAATGTGGTCATGGGTGCGTCAAAGACTTACTTAGCTGG---------------------------------------------GAGTCTGAAGGTGGTCAT-----------GGGTTACAAAGAGCTCAGCGGTGAGCCTGGCCCAAGCTTCTGACCTCTTTCTTTGGATCTCAAGGGCTT-ATCATTCCCTATTCCCAATGGATCTCAAGAATTTGCCTATTTACCTCCTGCCC--------CAGACCCT------CCCCACTTTGATACCTTGGGACGCAGGCAT---CCTCTTTCCTTCCCCTCCAGCTACCCAAGCACCTCCAGGCCCTACTCTCTGCCAATC--------TGAACTCCAGGACTCTGCAGCCCCACCCCCAAattgctagataatatagtgattctatttttagtgttttgaatagtctctatactgttttctatagttgctgtactaattt--------acacactgtgtgtaagagtgcccttttctccagatcctca-caagcatctgtttttgtttttgt------------ttttgtttctgttttgtctttttagttgtacccattctatct-ggggtaagatgatatttcattgtggttttgatttgcatttccctgaagatcagtgatgttgagcatttttcaagtacctgttggccatttgtatgtcttcttttgagaaatgtctgttcatgtcctttgtctacttctcaatagaattttttgggttttttcttttaactcttgagtt----ga-ttccttatatattctggatatcagtcccttgtcagataaattgtttgaaaatattttctcccattcaagatgttgtctctctactcttttgatggttttctttgctgtgcagaagtattttagtttattatagtcccatttgtctg-ttttgtttgggttgtctgtgcttttgaagtcttagccaaaaaatctttgcccagaccaatgtcctagaatgtttctcataagttttcttccagttgttttatagttttggatcttatatctaagtgtttaatccatcttgagttgatatttatataggatgagagacagggatctaatttcattcttctacatatggatatccaatttccccagcaccatttatttaagaaggtgtcctttccccaaatgtatgttcttggcacctttgtcaagaatcagttggctgtaaatatgtggatttatttccagatcctctattatgttgcattgattgacat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29886555 1420 -  71996105 -GAGAGTTTCTAGGGTTCTGAGGAAAAGAGAGCTGCTATACAGATGCTAA-GGGCCCAGCCCTGGGAGTTTCAGGGTCCCACTTTCTTAGCTAGGATCTTAAGGCCCTATCAGAGTCCACCCTCAGGAAGCCTGCAGTCATAGCACTGGGCTAGCTGGACGGCTGCCTCTTCTTTGCCTTTGACAGCAGGAGCTGCCATGCCAGGCCCAGGGGCCCTGGGGGTCATGGGCAGAGAGCAGGTCCCTCTGCTGGCAGCCAAGGAGACGTTGTTCTTGGA---------------------------------------------GGGTGCGTCAAAGACTTACTTAGCTGG---------------------------------------------GAGTCTGAAGGTGGTCAT-----------GGGTTACAAAGAGCTCAGCGGTGAGCCTGGCCCAAGCTTCTGACCTCTTTCTTTGGATCTCAAGGGCTC-ATCATTCCCTATTCCCAATGGATCTCAAGAATGCGCCTATTTACCTCCTGCCC--------CAGACTCT------CCCCACTTTGATACCTTGGGACGCAGGCAT---CTTCTTTCCTTCTCCTCCAGCTACCCAAGCACCTCCAGGCCCTACTCTCTGCCAACC--------TGAACTCCAGGACCCTGCAGCCCCACCCCCAAattgctagataatatagtgattctatttttagtgttttgagtagtctctatactgttttctatagttgctgtactaattt-------tacacactgtgtgtaagagtgcccttttcttcagatcctca-caaacatctgtttttgcttttgg------------ttttgtttctgttttgtctttttagttgtacccattctatct-agggtaagatgatatctcattgtggttttgatttgcatttccctgatgatcagtgatgttgagcatttttcaagtacctgttgcccatttgtatgtcttcttttgagaaatgtctattcatgtcctttgtctgcttctcaatagaattttttgggttttttcttttaactcttgagtt----ga-ttccttatatattctggatatcagtcccttgtcagataaattgtttgaaaatattttctcccattcaagatgttgtctctctactcttttgatggttttctttgctgtgcagaagtattttagtttattatagtcccatttgtctg-ttttgtttgggttgtctgtgcttttgaagtcttagccaaaaaatctttgcccagaccaatgtcctagaatgtttctcataagttttcttccagttgttttatagttttggatcttatatctaagtgtttaatccatcttgagttgatatttatataggatgagagacagggatctaatttcattcttctacatatggatatcccatttccccagcaccatttatttaagaaggtgtcctttccccaaatgtatgttcttggcacctttgtcaagattcagttggctgtaaatatgtggatttatttccagattctctattatgttgcattgattgacat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     660396 1464 -    735854 GGAGAGTTTCTAGGGTTCTGAGGAAAAGAGAGCTGCTATACAGATGCTAA-GGGCCCAGCCCTGGGAGTTTCAGGGTCCCACTTTCTTAGCTAGGATCTTAAGGCCCTATCAGAGTCCACCCCCAGGAAGCCTGCAGTCATAGCACTGGGCTAGCTGGACGGCTGCCTCTTCTTTGCCTTTGACAGCAGGAGCTGCCATGCCAGGCCCAGGGGCCCT-GGGGTCATGGGCAGAGAGCAGGTCCCTCTGCTGGCAGCCAAGGAGATGTTGTTCTTGGAGGGTGCGTCAAAGACTTACTTAGCTGGGAGTCTGAATGTGGTCATGGGTGCGTCAAAGACTTACTTAGCTGG---------------------------------------------GAGTCTGAAGGTGGTCAT-----------GGGTTACAAAGAGCTCAGTGGTGAGCCTGGCCCAAGCTTCTGACCTCTTTATTTGGATCTCAAGGGCTT-ATCATTCCCTATTCCCAATGGATCTCAAGAATTTGCCTATTTACCTCCTGCCC--------CAGACCCT------CCCCACTTTGATACCTTGGGATGCAGGCAT---CCTCTTTCCTTCCCCTCCAGCTACCCAAGCACCTCCAGGCCCTACTCTCTGCCAACC--------TGAACTCCAGGACCCTGCAGCCCCACCCCCAAattgctagataatatagtgattctatttttagtgttttgaatagtctctatactgttttctatagttgctgtactaa-tt-------tacacactgtgtgtaagactgcccttttctccagatcctca-caagcatctgtttttgcttttgt------------ttttgtttctgttttgtctttttagttgtacccattctatct-ggggtaagatgatatttcattgtggttttgatttgcatttccctgaagatcagtgatgttgagcatttttcaagtacctgttggccatttgtatgtcttcttttgagaaatgtctgttcatgtcctttgtctacttctcaatagaattttttgggttttttcttttaactcttgagtt----ga-ttccttatatattctggatatcagtcccttgtcagataaattgtttgaaaatattttctcccattcaagatgttgtctctctactcttttgatggttttctttgctgtgcagaagtattttagtttactatagtcccatttgtctg-ttttgtttgggttgtctgtgcttttgaagtcttagccaaaaaatctttgcccagaccaatgtcctagaatgtttctcataagttttcttccagttgttttatagttttggatcttatatctaagtgtttaatccatcttgagttgatatttatataggatgagagacagggatctaatttcattcttctacatatggatatccaatttccccagcaccatttatttaagaaggtgtcctttccccaaatgtatgttcttggcacctttgtcaagaatcagttggctataaatatgtggatttatttccagattctctattatgttgcattgattgcaat
i manLeu1.NW_012107142v1   I 19 C 0
s colAng1.NW_012115577v1     544120 1464 -   1829203 -GAGAGTTTCTAGGGTTCTGAGGAAAAGAGAGCTGCTATACAGATGCTAAGGGGCCCAGCCCTGGGAGTTTCAGGGTCCCACCTTCTTAGCTAGGATCTTAAGGCCCTATCAGAGTCCACCCCCAGGAAGCCTGCAGTCATAGCACTGGGCTAGCTGGACAGCTGCCTCTTCTTTGCCTTTGACAGCAGGAGCTGCCATGCCAGGCCCAGGGGCCCT-GGGGTCATGGGCAGAGAGCAGGTCCCTCTGCTGGCAGCCAAGGAGATGTTGTTCTTGGA---------------------------------------------GGGTGCGTCAAAGACTTACTTAGCTGGGAGTCTGAAGGTGGTCATGGGTGCGTCAAAGACTTACTTAGCTGCGAGTCTGAAGGTGGTCAT-----------GGGTTACAAAGAGCTCAGCGGTGAGCCTGGCCCAAGCTTCTGACCTCTTTCTTTGGATCTCAAGGGCTC-ATCATTCCCTGTTCCCAATGGATCTCAAGAATTTGCCTATTTACCTCCTGCCC--------CAGACCCT------CCCCACTTTGATACCTTGGGACCCAGGCAT---CCTCTTTCCTTCTCCTCCAGCTACCCAAGCACCTCCAGGCCCTACTCTCTGCCAACC--------TGAACTCCAGGACCCTGCAGCCCCACCCCCAAatttctagataatatagtgattctatttttagtattttgaatagtctctatactattttctatagttgctgtactaattt-------tacacactgtgtgtaagagtgcccttttctccagatcctca-caagcatctgtttttgcttttgt------------ttttgtttctgttttgtctttttagttgtacccattctatct-ggggtaagatgatatttcattgtggttttgatttgcatttccctgatgatcagtgatgttgagcatttttcaagtacctgttgcccatttgtatgtcttcttttcagaaatgtctattcatgtcctttgtctacttctcaatagaattttttggg--tttttttttaactcttgagtt----gagttccttatatattctggatatcagtcccttgtcagataaattgtttgaaaatattttctcccattcaaggtgttgtctctctactcttttgatggttttctttgccgtgcagaagcattttagtttattatagtcctatttgtctg-ttttgtttgggttgtctgtgcttttgaagtcttagccaaaaagtctttgcccagaccagtgtcctagaatgtttcttgtaagttttcttccagttgttttatagttttggatcttacatctaagtgtttaatccatcttgagttgatatttatacagggtgagagacagggatctaatttcattcttctgcatatgcatatccaatttccccagcaccatttattgaagagggtgtcctttccccaaatgtatgttcttggcacctttgtcaagaatcagttggctgtaaatatgtggatttatttccagattctctatgatgttgcattgatTGACAC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128         25255631 1350 -  25516302 AGGAAGTCCCTAGGGTCCTGAAGAAACGATAGCTAAGGC-CAGGTGCTAAGGGGCCCAG-GGTAATAGTTCCAGGGACGTACTTTCTGAGCTAGGACTTTATTGTTACATCAGAGT-CAGTCCCATGAGGCCTGGGGTCACAGCACTCAGTTTGCTGAATGGCTGCCTC-TCATTGCCTTTGACAGCAGAAGCCATCATGCCAGGCCCAGGATCCAC-AGGGTCACAGACAGAGAGCAGGCCCCTCTGCTGG-AGCCAAGGAGATGTTGTTCTGGGA---------------------------------------------TGATGTGT----GCATGACTTAGGTTG---------------------------------------------GAATCTGAAGATGGTTGT-----------GGGTTACAAAGAGGTCAACCATGAGCCTGGCCCAAGCTTCTGAACCCTTGTCCTGGATCCTGAGGGCTTGAATCCTCCCTATTCCCAAGAGATCTCAAAAATTCTTCTGTTAATCTCCTGCCCTCTGGAGGCAGCCCCTCACCTCCCTCACTTCCATACTCTAGGACTCAGGCATCTGCCTCTTTCATTCTCCTGCAGCTACCCAAGTGGCCCCAGGCCCTGCTGTCTGCCAACCCTGACCCTTGAACTCCAGGGCTTTGCCACCCCACCCACAgattgctggatgatgtagtggttctgtttttatatttttgaaaactctccttactgttttctacagtggccgtactaatttaaactcctaccaacagtatgtaagagttcccttttctccacatcatcagcatctatttgtttgtttttttgtgtttattgtttgttttatttttatttttatttttcagctgtgtctattctgtct-ggggtaagaaaacatctc--catggttttgatttgcattt-------------------------tttttaatgtacctgttggccatttgtatgtcttcttttgagaaatatctattcgtatcctttgctcgctttttaatgagattatttg----tttttttttaattcttgagttgtttgagtttgttatatattttatatattagtcctttgtcagatacatt-----------------------------gttatctcttcactctgttgattgttttcttcactgtgcagaagcgttttag---------------tttgtctatttttgtttgtgttttctgtatttttgaagcattagccataaaatcttagctcagaccaatgtcctaggatgttttccctagattttcttccagttgttttatagtttcaggtcttacatttaagtatataattcaacttgagttggtttttatatgcagttagtgataggaatctaatttcattcttctgcatttggctatccattttc-------------------------------------aatg--tgttcttggcacctttgttaaaagtcagttggctataagcatatagatttatttctggattctctattatgttccactgattgacat
i saiBol1.JH378128         C 0 I 2356
e otoGar3.GL873550         18203763    0 -  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e nomLeu3.chr1a            47781820    5 - 122973662 I
e panPan2.chr6             31028995    0 + 173848474 C
e panTro5.chr6             30604965    0 + 175400573 C

a score=10476.000000
s hg38.chr6_GL000254v2_alt  1743137 3 +   4827813 gtG
s gorGor5.CYUI01015528v1     556482 3 +   2037526 gtG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31104737 3 + 172585720 gtG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30396788 3 - 170955103 gtG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     651399 3 +   1495729 gtG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     752598 3 -    863181 gtG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29887975 3 -  71996105 gtG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     661860 3 -    735854 gtg
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     545584 3 -   1829203 GTG
i colAng1.NW_012115577v1   C 0 C 0
e saiBol1.JH378128         25256981 2356 -  25516302 I
e otoGar3.GL873550         18203763 0 -  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e nomLeu3.chr1a            47781820 5 - 122973662 I
e panPan2.chr6             31028995 0 + 173848474 C
e panTro5.chr6             30604965 0 + 175400573 C

a score=1207987.000000
s hg38.chr6_GL000254v2_alt  1743140 352 +   4827813 tttgtagagacgaggtctcagtatgtttcccaggctggtctaaaacctctgggctcaagtggttcaccctccttggcctcccaaagtgctgggattacaggagtgagccacagtacctggccTTTGTGCTGTGTTTTGATTCATCATTATCTCCTAAGCCCTTTCCCAGCATTGATATTTTACTAAACACCCTATGATTAAATTATATCTCTACACCTTGAGATAAACAAAAAATTATATAAGCGGTAAAGACAAATATGAAAAAATAAAACTACTACCAATGTTATTAGGAGGATAACCTTAAAACATTTGAGTAAGAAAAtttttctttttttc-ttttttcttttttttt-----------
s gorGor5.CYUI01015528v1     556485 352 +   2037526 tttgtagagacgaggtctcagtatgtttcccaggctggtctaaaacctctgggctcaagtggttcaccctccttggcctcccaaagtgctgggattacaggagtgagccacagtacctggccTTTGTGCTGTGTTTTGATTCATCATTATCTCCTAAGCCCTTTCCCAGCATTGATATTCTACTAAACATCCTATGATTAAATTATATCTCTACACCTTGAGATAAACAAAAAATTATATAAGCAGTAAAGAC-AATATGAAAAAATAAAACCACTACCAATGTTATTAGGAGGATAACCTTAAAACATTTGAGTAAGAAAAtttttctttttttcttttttttttttttttt-----------
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31104740 341 + 172585720 tttgtagagacgaagtctcagtatgtttcccagactggtctaaaacatctgggctcaagtggttcactctcctcagcctcccaaagtgcagggattacaggagtgagccacagtacctggccTCTATGCTGTGTTTTGATTCATCATTATCTCCTAAGCCCTTTCCCCACATTGATATTCTAGTAAACATCCCATGATTAAATTATATCTCTACACCTTGAGATAAACAAAAAATTATTTAAGCAGTAAAGAAAAATATGAAAAAATAAAACTACTACCAATGTTATTAGGAGGATAACCTTAAAACATTTCAGTAAGAAAATTT------------TTCTTTCATTTTTTTT-----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30396791 341 - 170955103 tttgtagagatgaagtctcagtatgtttcccagactggtctaaaacttctgggctcaagtggttcacttccctcagcctcccaaagtgctgggattacaggagtgagccacagtacctggccTCTATGCTGTGTTTTGATTCATCATTATCTCCTAAGCCCTTTCTCCACATTGATATTCTAGTAAACATCCCATGATTAAATTATATCTCTACACTTTGAGATAAACAAAAAATTATTTAAGCAGTAAAGAAAAATATGAAAAAATAAAACTACTACCAATGTTATTAGGAGGATAACCTTAAAACATTTCAGTAAGAAAATTT------------TTCTTTCATTTTTTTT-----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     651402 341 +   1495729 tttgtagagacgaagtctcagtatgtttcccagactggtctaaaacttctgggctcaagtggttcacttccctcagcctcccaaagtgctgggattacaggagtgagccacagtacctggccTCTATGCTGTGTTTTGATTCATCATTATCTCCTAAGCCCTTTCTCCACATTGATATTCTAGTAAACATCCCATGATTAAATTATATCTCTACACTTTGAGATAAACAAAAAATTATTTAAGCAGTAAAGAAAAATATGAAAAAATAAAACTACTACCAATGTTATTAGGAGGATAACCTTAAAACATTTCAGTAAGAAAATTT------------TTCTTTCATTTTTTTT-----------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     752601 341 -    863181 tttgtagagacgaagtctcagtatgtttcccagactggtctaaaatttctgggctcaagtggttcactctcctcagcctcccaaagtgctgggattacaggagtgagccacagtacctggccTCTATGCTGTGTTTTGATTCATCATTATCTCCTAAGCCCTTTCCCTACATTGATATTCTAGTAAACATCCCATGATTAAATTATATCTCTATACCTTGAGATAAACAAAAAATTATTTAAGCAGTAAAGAAAAATATGAAAAAATAAAACTACTACCAATGTTATTAGGAGGATAACCTTAAAACATTTCAGTAAGAAAATTT------------TTCTTTCATTTTTTTT-----------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29887978 341 -  71996105 tttgtagagatgaagtctcagtatgtttcccagactggtctaaaacatctgggctcaagtggttcactctcctcagcctcccaaagtgctgggattacaggagtgagccacagtacctggccTCTATGCTGTGTTTTGATTCATCATTATCTCCTAAGCCCTTTCCCCACATTGATATTCTAGTAAACATCCCATGATTAAATTATATCTCTACACCTTGAGATAAACAAAAAATTATTTAAGCAGTAAAGAAAAATATGAAAAAATAAAACTACTACCAATGTTATTAGGAGGATAACCTTAAAACATTTCAGTAAGAAAATTT------------TTCTTTCATTTTTTTA-----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     661863 341 -    735854 tttgtagagacgaagtctcagtatgtttcccagactggtctaaaacatctgggctcaagtggctcactctcctcagcctcccaaagtgctgggattacaggagtgagccacagtacctggccTCTATGCTGTGTTTTGATTCATCATTATCTCCTAAGCCCTTTCCCCACATTGATATTCTAGTAAACATCCCATGATTAAATTATATCTCTACACCTTGAGATAAACAAAAAATTATTTAAGCAGTAAAGAAAAATATGAAAAAATAAAACTACTACCAATGTTATTAGAAGGAAAACCTTAAAACATTTCAGTAAGAAAATTT------------TTCTTTCATTTTTTTT-----------
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     545587 321 -   1829203 tttgtggagacaaagtctcagtatgtttcccagactgg---------tctgagctcaagtggttcactctcctcagcctcccaaagtgctgggattacaggagtgagccacagtacctggccTCTATGCTGTGTTTTGATTCATCATTATCTCCTAAGCCCTTTTCCCACATTGATATTCTAGTAAACATCCCATGATTAAATTATATCTCTACACCTTGAGATAAACAAAAAATTATATAAGCAGTAAAGAAAAATATGAAAAAATAAAACTACTACCAAT-----------GATAACCTTAAAATATTTGAGTAAGAAAATTT------------TTATTTCATTTTTTCT-----------
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128         25259337 351 -  25516302 ttcatagagtcaaggtatgactatattgcccaggctggtctcaaactcctgggttcaaacaatttacccacctcaacttcccaaaatgctgggattacaggcctgagccaccgcacccagGCTCTAGCCTGTGTTTTGATTCATCATCATCTCCTAAGCCCTTTCCCAGCATGTGTAGTCTACCAAACATGCCATGATTAAATTATATCTCTACACCTTGATATAACCAAAAACTTAAATCAACAGTAAAGAGAAATATGAAAAAGT-AAATTAGTACCAAAATTATTAAGAGGATAACCTAAAACTATTTGGATACAAAAATCT------------TTCTTTTTTCCttttccttttctttct
i saiBol1.JH378128         I 2356 I 347
e otoGar3.GL873550         18203763   0 -  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e nomLeu3.chr1a            47781820   5 - 122973662 I
e panPan2.chr6             31028995   0 + 173848474 C
e panTro5.chr6             30604965   0 + 175400573 C

a score=207363.000000
s hg38.chr6_GL000254v2_alt  1743492 57 +   4827813 AGCTGTAACTGCTGGAATGGAAAATATTTCTTAAATGAG--ACAAATATATGAAAGTGA
s gorGor5.CYUI01015528v1     556837 57 +   2037526 AGCTGTACCTGCTGGAATGGAAAATATTTCTTAAATGAG--ACAAATATATGAAAGTGA
i gorGor5.CYUI01015528v1   C 0 I 1645
s rheMac8.chr4             31105081 57 + 172585720 AGCTACACCTGCTGGAATGGAAAATGTTTCTTAAATGAG--ACAAATATATGAAATTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30397132 57 - 170955103 AGCTACACCTGCTGGAATGGAAAATGTTTCTTAAATGAG--ACAAATATATGAAATTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     651743 57 +   1495729 AGCTACACCTGCTGGAATGGAAAATGTTTCTTAAATGAG--ACAAATATATGAAATTGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     752942 57 -    863181 AGCTACACCTGCTGGAATGGAAAATGTTTCTTAAATGAG--ACAAATATATGAAATTGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29888319 57 -  71996105 AGCTACACCTGCTGGAATGGAAAATGTTTCTTAAATGAG--ACAAATATATGAAATTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     662204 57 -    735854 AGCTACACCTGCTGGAATGGCAAATGTTTCTTAAATGAG--ACAAATATATGAAATTGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     545908 57 -   1829203 AGCTACACCTGCTGGAATGGAAAATGTTTCTTAAATGAG--ATAAATATATGAAATTGA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128         25260035 59 -  25516302 AGCAATAGTTGATAGAATGGAAAATGTTTCTTAAAAGAAACACAAGTATATCAAATTGA
i saiBol1.JH378128         I 347 C 0
e otoGar3.GL873550         18203763  0 -  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e nomLeu3.chr1a            47781820  5 - 122973662 I
e panPan2.chr6             31028995  0 + 173848474 C
e panTro5.chr6             30604965  0 + 175400573 C

a score=3236794.000000
s hg38.chr6_GL000254v2_alt  1743549 1127 +   4827813 AAATGCTTAAACTTCAAAGGACTTACATTACATATAcagtcattcttt-cttaatgataagataggttctgagaaatgtgtccttaggtgatttggtcttacgtgaacatcataaagtgtccatacacaaagctagatga--tatagcctactgcacacctacgctatatcataaagcctattgctcctaggctacaaacttggatagcacattactatactgagtactgtaggcaattgtaacacaatggtaggtatttgtggatctaaacatatgtaaac--agaaaaagtacagtaaaaatatggtaaaaaga---------tttttaaaatggcacacctatataggttactcatcatgaatggagcttacaggactggaagttgctctgggtgagtcagcaagtgagtggtgagtgaac-tgaaggcctaggccattactgtgcactactgtagattttataaatgctgtacacttaggctacactaaattgattttaaaaataattttctt----taataataaattaacct---------------------------------------------------------tagcttaat----gtaacttttt-taactttataaac----------tttaatttttaaaacttttcag----------cttttgtaatagcacttagcttaaaagaccaacatgttacaaag-------------ctgtacaaaaatattgttccttatattttcattctagaaacttatttctatttaatttttttttacttttaaatcttttctgttaaaaaaaaaaagacataaattagcctaggccgacacagggttaggatcaacaatatc-actatctttagcctttacatcttgtcccactggaagattttcaggtgtaataacatgcatggagctgccatctcctatgataacaatgccttcttctggaatacctcctaaaggacctggccgaggctgtttcaagt-----ttttttaataattagaaggagcacactctaaaataacaa-taaaaagtatag----------------------------------------------------------------------taaatatgtaaacca----gtaacatagtcatttattatcattatcaaggattatgtattgtacataactgtatgtgctagacttttataggattgacactgcagtaggtttgtttacaccagcatcaccacaaacatatcattaatgcattgtactatgatgtacagtgtcacctacaatgtca
s rheMac8.chr4             31105138 1131 + 172585720 AAATGCTTAAACTTCAAAGGACTTACATTACATATATagtcattcttt-cttaatgatgagataggttctgagaaatgtgtccttaggtgatttggtcttatgtgaacatcatagagtgtccttacacaaagctagatgg--tatagcctactgcacacctaggctacatgataaagcctattgctcctaggatacaaacttggatagcatgttgctgtagtgagtactgtaggcaactgtaacacaatggtaggtatttgtggatctaaacatatgtaaac--agaaaaaatacagtaaaaatgcggtaaaaaga---------ttttttaaatggcacacctgtataagttacttaccatgaatggagcttacaggactggaagttgctctgggtgagtcagcaagtgagtggtgagtgaatgtgagggtctaggccattactgtgcactactgtagattttataaatgctgtacacttagattacactaaattgattttaaaagtcattttctttctttaataataaattaacct---------------------------------------------------------taacttagt----gtaa-------taactttataaac----------tttaattttttaaacttttcag----------cttttgtaatagcacttagcttaaaagaccaacatgctacaaagctgtaccaaaatattgtacaaaaatattgttccttatattttcattctagaaacttatttctattcaa-ttttttttacttttaaatcttttctgtt--aaaaacaaagacatacattagcctaggctgacaaagggtcaggatcaacaatatc-accatcttcagccttcacatcttatcccactggaagattttcagg---aataacatacatggagctgccatctcctgtgataacaatgc---cttctggaatacctcctaaagaacctgcatgaggctgttttaagttaacattttttaataattagaaggagcacactctaaaataacaattaaaaagtatag----------------------------------------------------------------------taaatacataaacaa----gtaac--agtcatttatt---atcatcaaggattatgtattgtacataactgtatgtgctagacttttataggattgatagtgcagtaggtttgtttacaccagcattaccacaaacatatgattaatacattgtactatgacataaaatgtcacctacaatgtca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30397189 1137 - 170955103 AAATGCTTAAACTTCAAAGGACTTACATTACATGTATagtcattcttt-cttaatgatgagataggttctgagaaatgtatccttaggtgatttggtcttacgtgagcatcatagagtgtccttacacaaagctagatgg--tatagcctactgcacacctaggctacatgataaagcctattgctcctaggatacaaacttggatagcatgttactgtagtgagtactgtaggcaactgtaacacaatggtaggtatttgtggatctaaacatatgcaaac--agaaaaaatacagtaaaaatgcggtaaaaaga---------ttttttaaatggcacacctgtataagtgacttaccatgaacagagcttacaggactggaagttgctctgggtgagtcagcaagtgagcggtgggtgaatgtgagggtctaggcctttaccgtgcactactgtagattttataaatgctgtacacttaggttacactagattgattctaaaagtcattttctttctttaataataaattaacct---------------------------------------------------------taacttagt----gtgacttttt-taactttgtaaac----------tttaattttttaaacttttcag----------cttttgtaatagcacttagcttgaaagaccaacatgttacaaagctgtacaaaaatattgtacaaaaatattgttccttatactttcattctagagacttatttctattcaa-ttttttttacttttaaatcttttctgtt--aaaaacaaagacatacattagcctaggctgacaaagggtcaggatcaacaatatc-accatcttcagccttcacatcttatcccactggaagattttcagg---aataacatgcatggagctgccatctcctatgataacaatgc---cttctggaatacctcctaaaggacctgcatgaggctgttttaaggtaacattttttaataattagaaggagcacactctaaaataacaattaaaaagtatag----------------------------------------------------------------------caaatacataaacaa----gtaac--agtcatttatt---attatcaaggattatgtattgtacataactgtatgtgctaaacttttataggattgatagtgcagtaggtttgtttacaccagcattaccacaaacatatgattaatgcattgtactatgacatacaatgtcacctacaatgtca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     651800 1137 +   1495729 AAATGCTTAAACTTCAAAGGACTTACATTACATGTATagtcattcttt-cttaatgatgagataggttctgagaaatgtatccttaggtgatttggtcttacgtgagcatcgtagagtgtccttacacaaagctagatgg--tatagcctactgcacacctaggctacatgataaagcctattgctcctaggatacaaacttggatagcatgttactgtagtgagtactgtaggcaactgtaacacaatggtaggtatttgtggatctaaacatatgcaaac--agaaaaaatacagtaaaaatgcggtaaaaaga---------ttttttaaatggcacacctgtataagtgacttaccgtgaacagagcttacaggactggaagttgctctgggtgagtcagcaagtgagcggtgggtgaatgtgagggtctaggcctttactgtgcactactgtagattttataaatgctgtacacttaggttacactagattgattctaaaagtcattttctttctttaataataaattaacct---------------------------------------------------------taacttagt----gtaacttttt-taactttataaac----------tttaattttttaaacttttcag----------cttttgtaatagcacttagcttgaaagaccaacatgttacaaagctgtacaaaaatattgtacaaaaatattgttccttatactttcattctagagacttatttctattcaa-ttttttttacttttaaatcttttctgtt--aaaaacaaagacatacattagcctaggctgacaaagggtcaggatcaacaatatc-accatcttcagccttcacatcttatcccactggaagattttcagg---aataacatgcatggagctgccatctcctatgataacaatgc---cttctggaatacctcctaaaggacctgcatgaggctgttttaaggtaacattttttaataattagaaggagcacactctaaaataacaattaaaaagtatag----------------------------------------------------------------------caaatacataaacaa----gtaac--agtcatttatt---attatcaaggattatgtattgtacataactgtatgtgctaaacttttataggattgatagtgcagtaggtttgtttacaccagcattaccacaaacatatgattaatgcattgtactatgacatacaatgtcacctacaatgtca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     752999 1207 -    863181 AAATGCTTAAACTTCAAAGGACTTACATTACATATATagtcattcttt-cttaatgatgagataggttctgagaaatgtgtccttaggtgatttggtcttatgtgaacatcatagagtgtccttacacaaagctagatgg--tatagcctactgcacacctaggctacatgataaagcctattgctcctaggatataaacttggatagcatgttactgtagtgagtactgtaggcaactgtaacacaatggtaggtatttgtggatctaaacatatgtaaac--agaaaaaatacagtaaaaatgcgataaaaaga---------ttttttaaatggcacacctgtataagttacttaccatgaatggagcttacaggactggaagttgctctgggtgagtcaacaagtgagtggtgagtgaatgtgagggtctaggccattactgtgcactactgtagattttataaatgctgtacacttaggttacactaaattgattttaaaagtcattttctttctttaataataaattaacct---------------------------------------------------------taacttagt----gtaacttttt-taactttataaac----------tttaattttttaaacttttcag----------cttttgtaatagcacttagcttaaaagaccaacatgttacaaagctgtacaaaaatattgtacaaaaatattgttccttatattttcattctagaaacttatttctattcaa-ttttttttacttttaaatcttttctgtt--aaaaacaaagacatacattagcctaggctgacaaagggtcaggatcaacaatatc-actatcttcagccttcacatcttatcccactggaagattttcagg---aataacatacatggagctgccatctcctgtgataacaatgc---cgtctggaatacctcctaaaggacctgcatgaggctgttttaagttaacattttttaataattagaaggagtacactctaaaataacaattaaaaagtatagtaaatacataaacaagtaacagtcatttattattatcaaggattatgtattgtacataactgtattatagtaaatacataaacaa----gtaac--agtcatttatt---attatcaaggattatgtattgtacataactgtatgtgctaaacttttataggattgatagtgcagtaggtttgtttacaccagcattaccacaaacatatgattaatgcattgtactatgacatacaatgtcacctacaatgtca
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29888376 1137 -  71996105 AAATGCTTAAACTTCAAAGGACTTACATTACATATATAGTCATTTTTT-cttaatgatgagataggttctgagaaatgtgtccttaggtgatttggtcttatgtgaacatcatagagtgtccttacacaaagccagatgg--tatagcctactgcacacctaggctacatgataaagcctattgctcctaggatacaaacttggatagcatgttactgtagtgagtactgtaggcaactgtaacacaatggtaggtatttgtggatctaaacatatgtaaac--agaaaaaatacagtaaaaatgcggtaaaaaga---------ttttttaaatggtacacctgtataacttacttaccatgaatggagcttacaggatgggaagttgctctgggtgagtcagaaagtgagtggtgagtgaatgtgagggtctaggccattactgtgcactactgtagattttataaatgctgtacacttaggttacactaaattgattttaaaagtcattttctttctttaataataaattaacct---------------------------------------------------------taacttagt----gtaacttttt-taactttgtaaac----------tttaattttttaaacttttcag----------cttttgtaatagcacttagcttaaaagaccaacatgttacaaagctgtacaaaaatattgtacaaaaatattgttccttatattttcattctagaaacttatttctattcaa-ttttttttacttttaaatcttttctgtt--aaaaacaaagacatacattagcctaggctgacaaagggtcaggatcaacaatatc-accatcttcagccttcacatcttatcccactggaagattttcagg---aataacatacatggagctgccatctcctgtgataacaatgc---cttctggaatacctcctaaaggacctgcatgaggctgttttaagttaacattttttaataattagaaggagcacactctaaaataacaattaaaaagtatag----------------------------------------------------------------------taaatacataaacaa----gtaac--agtcttttatt---attatcaaggattatgtattgtacataactgtatgtgctagacttttataggattgatagtgcagtaggtttgtttacaccagcattaccacaaacatatgattaaggcattgtactatgacatacaatgtcacctacaatgtca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     662261 1136 -    735854 AAATGCTTAAACTTCAAAGGACTTACATTACATATATagtcattcttt-cttaatgatgagataggttctgagaaatgtgtccttaggtgatttggtcttatgtgaacatcatagagtgtccttacacaaagctagatgg--tatagcctactgcacacctaggctacatgataaagcctattgctcctaggatataaacttggatagcatgttactgtagtgagtactgtaggcaactgtaacacaatggtaggtatttgtggatctaaacatatgtaaac--agaaaaaatacagtaaaaatgcggtaaaaaga---------ttttttaaatggcacacctgtataagttacttaccatgaatggagcttacaggactggaagttgctctgggtgagtcaacaagtgagtggtgagtgaatgtgagggtctaggccattactgtgcactactgtagattttataaatgctgtacacttaggttacactaaattgattttaaaagtcattttctttctttaataataaattaacct---------------------------------------------------------taacttagt----gtaacttttt-taactttataaac----------tttaattttttaaacttttcag----------cttttgtaatagcacttagcttaaaagaccaacatgttacaaagctgtacaaaaatattgtacaaaaatattgttccttatattttcattctagaaacttatttctattcaa--tttttttacttttaaatcttttctgtt--aaaaacaaagacatacattagcctaggctgacaaagggtcaggatcaacaatatc-accatcttcagccttcacatcttatcccactggaagattttcagc---aataacatacatggagctgccatctcctgtgataacaatgc---cttctggaatacctcctaaaggacctgcatgaggctgttttaagttaacattttttaataattagaaggagaacactctaaaataacaattaaaaagtatag----------------------------------------------------------------------taaatacataaacaa----gtaac--agtcatttatt---attatcaaggattatgtattgtacgtaactgtatgtgctaaacttttataggattgatagtgcagtaggtttgtttacaccagcattaccacaaacatatgattaatgcattgtactatgacatacaatgtcacctacaatgtca
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     545965 1121 -   1829203 AAATGCTTAAACTTCAAAGGACTTACATTACATATATagtcattcttt-cttaatgatgagataggttctgagaaatgtgtccttaggtgatttggtcttacgtgaacatcatagagtgtccttacacaaagctagatagtatatagcctactgcacacctaggctacatgataaagcctattgctcctaggatgcaaacttggatagtatgttactgtactgagtactgtaggcaactgtaacacaatggtaggtatttgtggatctaaacatatgtaaac--agaaaaaatacagtaaaaacgcggtaaaaaga---------ttttttaaatggcacacctgtataagttacttaccatgaatggagcttacaggaccggaatttgctctgggtgagtcagcaagtgagtggtgagtgaatgtgagggtctcggccattactgtgcactactgtagattttataaatgctgtacacttaggctacactaaattgattttaaaagtcattttctttctataataataaattaac--------------------------------------------------------------cttagt----gtaacttttt-taactttataaac----------tttaattttttacacttttcag----------cttttgtaatagcacttagcttaaaagaccaacatgttacaaag-------------ttgtacaaaaatattgttccttatattttcattccagaaacttatttctattcaa-ttttttttacttttaaatcttttctgtt--aaaaacaaagacatacattagcctaggctgacaaagggtcgggatcaacaatatc-accatcttcagccttcacatcttatcccactggaggattttcagg---aataacatatatggagctgccatctcctatgataacaatgc---cttctggaacaccccctaaaggacctgcatgaggctgttttaagttaacattttttaataattagaagaagcacactctaaaataacaattaaaaagtatgg----------------------------------------------------------------------taaatacataaacaa----gtaac--attcatttatt---attatcaaggattatgtattgtacataacagtatgtgctagacttttataggattgatagtgcagtaggtttgtttacaccagcattaccacaaacatatgatcaatgcattgtactatgacatacaatgtcacctacaatgtca
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128         25260094 1217 -  25516302 AAAT-TTTAAACTTCAAGTAACATACA-TGCACATAcagtctttctttgcttgatagtgagatagcatctgagaaatgagtccttaggtgattttgtcatgtgtggtcatcatagcgtgtccttacagaaacctcgatag--tataacctaatgcacatgtaggctacatgaaaaagcccattgctcctaggctacaaacttgcatagcatgttattgtatggaatattgcagccaatt-taacacagtggtaagtatttgtggatctaaacatgagtaaacagagaaaaagtacagtaaaaatgtggtaaaaataaaaaagatttttttaagatggcgtatctgtctaggacacttaccatgaatgacgcttgcaggatggaaagttgctctgggtgagtcagtgagtgagtggtgagtgaatgtgaaggcctagggcattactgcacactgct-tatactttataaacactgtacacttaggctacactaaattgattttaataattgttttctttctttaataataaattaacttaattattaactaataattttatcagtcatttattaataattaataactaattgataataaattagttaccatagctttctgtaactttataaactttttaagtttttaactttataaactttttaacttttctactcttttgtaatagcacttagcttaaaacatcaacacattatacag-------------ctctacaaaaatatttttctttatattctccttctagaagctcattcctat-----tttttaaaatcttttaatcttttttggt--aaaaataaagacatacgttagcctaggctgacacaaggtcaggatcaacaatatcaaccttcttcagccttcatatcttatcccactggaagactttcaggggtagtaacatatatggagctgccatctcctatgataacattgcctctttctggaatacctcctgaagtacctggctaaggctattataagttaac-ttttttgatatatagaaggatcacactctaaaataacaa-taaaaactatag----------------------------------------------------------------------taaatacgtaaagcatagcataac--catctattatc---attatcaagtattatgtactgtaaataactgtatgtgctagacttttataggattggcagtgcagtaggtttgtttacagcagcagcatcacaaacacatgattaatgcattgtactatgaggt--tgtgatggctacaatgcta
i saiBol1.JH378128         C 0 I 605
e otoGar3.GL873550         18203763    0 -  18854210 I
e aotNan1.NW_018496901v1     287363 35491 -    486031 I
e cebCap1.NW_016107755v1    1103983 31740 -   1771730 I
e calJac3.chr4             30685650 23561 + 171630274 I
e nomLeu3.chr1a            47781820    5 - 122973662 I
e gorGor5.CYUI01015528v1     556894 1645 +   2037526 I
e panPan2.chr6             31028995    0 + 173848474 C
e panTro5.chr6             30604965    0 + 175400573 C

a score=4500.000000
s hg38.chr6_GL000254v2_alt   1744676 1 +   4827813 c
s panTro5.chr6             144786154 1 - 175400573 c
i panTro5.chr6             n 0 C 0
s panPan2.chr6             142810038 1 - 173848474 C
i panPan2.chr6             n 0 C 0
s rheMac8.chr4              31106269 1 + 172585720 c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              30398326 1 - 170955103 c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      652937 1 +   1495729 c
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      754206 1 -    863181 c
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29889513 1 -  71996105 c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      663397 1 -    735854 c
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      547086 1 -   1829203 c
i colAng1.NW_012115577v1   C 0 C 0
e saiBol1.JH378128          25261311 605 -  25516302 I
e otoGar3.GL873550          18203763 0 -  18854210 I
e aotNan1.NW_018496901v1      287363 35491 -    486031 I
e cebCap1.NW_016107755v1     1103983 31740 -   1771730 I
e calJac3.chr4              30685650 23561 + 171630274 I
e nomLeu3.chr1a             47781820 5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=1081445.000000
s hg38.chr6_GL000254v2_alt   1744677 235 +   4827813 taCAGAGAAGAAACCCCCAAAATCTGCACTCCTAAGCTGCATATGCTTCAGGTGATACTCTAAGAAGCCCACCAGAGAACAGTTGCTTGGAGATTGCATGCTAAGTAGAAATGCCAAAGGCTTCAGAGTATGAGGAGATGTTGGAATTTTAGCCCAGCCAAACCTGGGTTGAGCCAACAGGGTGGTGAAGCACTATGAGTGAGAACCCTTGCCTTGGAGTAAGGACTGCACTGAA
s panTro5.chr6             144786155 235 - 175400573 tacagagaagaaactcccaaaatctgcaCTCCAAAGCTGCATATGCTCCAGGTGATACTGTAAGAAGCCCACCAGAGAACAGCTGCTTGGGGATTGCATGCTATGTAGAAATGCCAAAGGCTTCATAGTGTGAGGAGATATTGGAATTTTAGCCCAGCCAAACCCGGGTTGAGACATGAGGATGGTGAAGCACTATGAGTGAGGGCCGTGGCCTTGGAGTAAGTACCACACTGAA
i panTro5.chr6             C 0 I 1313
s panPan2.chr6             142810039 235 - 173848474 TACAGAGAAGAAACTCCCAAAATCTGCACTCCAAAGCTGCATATGCTCCAGGTGATACTGTAAGAAGCCCACCAGAGAACAGCTGCTTGGGGATTGCATGCTATGTAGAAATGCCAAAGGCTTCATAGTGTGAGGAGATATTGGAATTTTAGCCCAGCCAAACCCGGGTTGAGACATGAGGATGGTGAAGCACTATGAGTGAGGGCCGTGGCCTTGGAGTAAGTACCACACTGAA
i panPan2.chr6             C 0 I 1312
s rheMac8.chr4              31106270 234 + 172585720 taCAGAGAAGAAACCCCCAAAATCTGCGCTCCTAAGCTGCATATGCTTCAGGTGATACTCTAAGAAGCCCACCAGAGAAGAGCTGCTTGGAGATTGCATGCTAAGTAGAAATGCCAAAGGCTTTGGAGTATGAGGAGATGTTGGAATTTTAGCCCAGCCAAACCTGGGTTGAGCCAACAGGGTGGTGAAGCACTATGAGTGAGGACCCTTGCCTTGGAGGAA-GACCACACTGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              30398327 235 - 170955103 taCAGAGAAGAAACCCCCAAAATCTGCGCTCCTAAGCTGCATATGCTTCAGGTGATACTCTAAGAAGCCCACCAGAGAACAGTTGCTTGGAGATTGCATGCTAAGTAGAAATGCCAAAGGCTTTGGAGTATGAGGAGATATTGGAATTTTAGTCCAGCCAAACCTGGGTTGAGCCAACAGGGTGGTGAAGCACTATGAGTGAGGACCCTTGCCTTGGAGGAAGGACCACACTGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      652938 235 +   1495729 taCAGAGAAGAAACCCCCAAAATCTGCGCTCCTAAGCTGCATATGCTTCAGGTGATACTCTAAGAAGCCCACCAGAGAACAGTTGCTTGGAGATTGCATGCTAAGTAGAAATGCCAAAGGCTTTGGAGTATGAGGAGATATTGGAATTTTAGTCCAGCCAAACCTGGGTTGAGCCAACAGGGTGGTGAAGCACTATGAGTGAGGACCCTTGCCTTGGAGGAAGGACCACACTGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      754207 235 -    863181 taCAGAGAAGAAACCCCCAAAATCTGCGCTCCTAAGCTGCATATGCTTCAGGTGATACTCTAAGAAGCCCACCAGAGAACAGTTGCTTGGAGATTGCATGCTAAGTAGAAATGCCAAAGGCTTTGGAGTATGAGGAGATGTTGGAATTTTAGCCCAGCCAAACCTGGGTTGAGCCAACAGGGTGGTGAAGCACTATGAGTGAGGACCCTTGCCTTGGAGAAAGGACCACACTGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29889514 235 -  71996105 taCAGAGAAGAAACCCCCAAAATCTGCACTCCTAAGCTGCATATGCTTCAGGTGATACTCTAAGAAGCCCACCAGAGAACAGTTGCTTGGAGATTGCATGCTAAGTAGAAATGCCAAAGGCTTTGGAGTATGAGGAGATGTTGGAATTCTAGCCCAGCCAAACCTGGGTTGAGCCAACAGGGTGGTGAAGTACTATGAATGAGGACCCTTGCCTTGGAGGAAGGACCACACTGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      663398 235 -    735854 taCAGAGAAGAAACCCCCAAAATCTGCGCTCCTAAGCTGCATATGCTTCAGGTGATACTCTAAGAAGCCCACCAGAGAACAGTTGCTTGGAGATTGCATGCTAAGTAGAAATGCCAAAGGCTTTGGAGTATGAGGAGATGTTGGAATTTTAGCCCAGCCAAACCTGGGTTGAGCCAACAGGGTGGTGAAGCACTATGAGTGAGGACCCTTGCCTTGGAGGAAGGACCACACTGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      547087 235 -   1829203 taCAGAGAAGAAACCCCCAAAATCTGCACTCCTAAGCTGCATATGCTTCAGGTGATACCCTAAGAAGCCCACCAGAGAACAGTTGCTTGGAGATTGTATGCTAAGTAGAAATGCCAAAGGCTTCAGAGTATGAGGAGATGTTGGAATTCTAGCCCAGCCAAACCTGGGTTGAGCCAACAGGGTGGTGAAGCACTATGAGTGAGGACCCTTGCCTTGGAGTAAGGACCACACTGAA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128          25261916 235 -  25516302 tatagaggaaaaacacccAAAATCTGCACTCCTAAGCTGCATATGCTCCAAGTAACACTCTAAGAAGCCCACCAGAGATCAGCTGTTTGGAGATTGCATGCTAAGTAGAAATATCAGAAGCTCCGTCGTGTGAGGAGATGTTGAAATTTTAGATGTGCAAAACCTGTGTTGAGACATCAGGTTGGGGAAGCCCTATAagtgaggaccctgaccttggagtaaggaccacactgaa
i saiBol1.JH378128         I 605 C 0
e otoGar3.GL873550          18203763   0 -  18854210 I
e aotNan1.NW_018496901v1      287363 35491 -    486031 I
e cebCap1.NW_016107755v1     1103983 31740 -   1771730 I
e calJac3.chr4              30685650 23561 + 171630274 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=66524.000000
s hg38.chr6_GL000254v2_alt   1744912 22 +   4827813 CTAGACTCATGTTAACAAAGGC
s rheMac8.chr4              31106504 22 + 172585720 CTAGACTCATGTTAACAAAGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              30398562 22 - 170955103 CTAGACTCATGTTAACAAAGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      653173 22 +   1495729 CTAGACTCATGTTAACAAAGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      754442 22 -    863181 CTAGACTCATGTTAACAAAGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29889749 22 -  71996105 CTAGACTCATGTTAACAAAGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      663633 22 -    735854 CTAGACTCATGTTAACAAAGGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      547322 22 -   1829203 CTAGACTCATGTTAACAAAAGC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128          25262151 22 -  25516302 atagacccaccctagcaaaggc
i saiBol1.JH378128         C 0 C 0
e otoGar3.GL873550          18203763  0 -  18854210 I
e aotNan1.NW_018496901v1      287363 35491 -    486031 I
e cebCap1.NW_016107755v1     1103983 31740 -   1771730 I
e calJac3.chr4              30685650 23561 + 171630274 I
e nomLeu3.chr1a             47781820  5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142810274 1312 - 173848474 I
e panTro5.chr6             144786390 1313 - 175400573 I

a score=765181.000000
s hg38.chr6_GL000254v2_alt   1744934 175 +   4827813 TAAAATCAAGCCTAAGCAGAATCAAAGTGGGTCTGATTTTTA---------------TGATAATTAATGAACCGTCAAGCAGTTAGCAGTCTTAGCAGGAAGATAGCAAAATCCAGAACCTCTGTAACACATCACCCAGAATATGTggcatgccaagcagcagaaaaaatgcaacaagtggagataaaat
s panTro5.chr6             144787703 190 - 175400573 taaaatCAAGCCTAAGCAGAATCAAAGTGGGTCCGATTTTTACCAAAGGTAATTCTTTTATAATTAATGAACTATCAAATTGTTAGCAGTCTGTGGAGGAAGATGGCAAAATCCAGAGCCTCTATAACACATCATCCAGAATATGTGGCATGCCAAGCAGCAGAGAAAATGCAACAAGTAGAGATAAAAT
i panTro5.chr6             I 1313 n 1313
s panPan2.chr6             142811586 190 - 173848474 taaaatCAAGCCTAAGCAGAATCAAAGTGGGTCCGATTTTTACCAAAGGTAATTCTTTTATAATTAATGAACTATCAAATTGTTAGCAGTCTGTGGAGGAAGATGGCAAAATCCAGAGCCTCTATAACACATCATCCAGAATATGTGGCATGCCAAGCAGCAGAGAAAATGCAACAAGTAGAGATAAAAT
i panPan2.chr6             I 1312 n 1312
s rheMac8.chr4              31106526 174 + 172585720 TAAAATCAAGCCTAAGTAGAATCAAAGTGGGTCTGATTTTTA---------------TGATAATTAATGAACTGTCAAGCAGTTAGCAGTCTTAGGAGGAAGACAGCaaaatccagaacctctataacgcatcacccagaatatgtggcatgccaagcagcaga-aaaatgcaacaagtagagataaaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              30398584 174 - 170955103 TAAAATCAAGCCTAAGTAGAATCAAAGTGGGTCTGATTTTTA---------------TGGTAATTAATGAACTGTCAAGCAGTTAGCAGTCTTAGGAGGAAGATAGCAAAATCCAGAACCTCTATAACGCATCACCCAGAATATGTggcatgccaagcagcaga-aaaatgcaacaagtagagataaaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      653195 174 +   1495729 TAAAATCAAGCCTGAGTAGAATCAAAGTGCGTCTGATTTTTA---------------TGATAATTAATGAACTGTCAAGCagttagcagtcttaggaggaagatagcaaaatccagaacctctataacgcatcacccagaatatgtggcatgccaagcagcaga-aaaatgcaacaagtagagataaaat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      754464 174 -    863181 TAAAATCAAGCCTAAGTAGAATCAAAGTGGGTCGGATTTTTA---------------TGATAATTAATGAACTGTCAAGCAGTTAGCAGtcttaggaggaagatagcaaaatccagaacctctataacacatcacccagaatatgtggcataccaagcagcaga-aaaatgcaacaagtagagataaaat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29889771 174 -  71996105 TAAAATCAAGCCTAAGTAGAATCAAAGTGGGTCTGATTTTTA---------------TGATAATTAATGAACTGTCAAGCAGTTAGCAGTCTTAGGAGGAAGATAGCAAAATCCAGAACCTCTATAACACATCACCCAGAATATGTggcatgccaagcagcaga-aaaatgcaacaagtacagataaaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      663655 174 -    735854 TAAAATCAAGCCTAAGTAGAATCAAAGTGGGTCTGATTTTTA---------------TGATAATTAATGAACTGTCAAGCAGTTAGCAGtcttaggaggaagatagcaaaatccagaacctctataacacatcacccagaatatgtggcataccaagcagcaga-aaaatgcaacaagtagagataaaat
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      547344 174 -   1829203 TAAAATCAAGCCTAAGCAGAATCAAAGTGGGTCTGATTTTTA---------------TGATAATTAATGAACTGTCAAGCGGttagcagtcttaggaggaagatagcaaaatctagaacctctataacacttcacccagaatatgtggcatgccaagcagcaga-aaaatgcaacaagtagaggtaaaat
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128          25262173 190 -  25516302 taaaatcaagactaagcagaatcaaagtgggtctgatttttactaaaggtgattcttcaataattacttaactgtcaaaatgttagcagtctttggaggaagataaaagaacagagaatctctaaaatgcattatctagaatatgtgccatgcctagcagcagagcaaatgcaaaaactagagaagaaat
i saiBol1.JH378128         C 0 C 0
e otoGar3.GL873550          18203763   0 -  18854210 I
e aotNan1.NW_018496901v1      287363 35491 -    486031 I
e cebCap1.NW_016107755v1     1103983 31740 -   1771730 I
e calJac3.chr4              30685650 23561 + 171630274 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=2399474.000000
s hg38.chr6_GL000254v2_alt   1745109 832 +   4827813 aatcaacagaagctgactc--agatgatctggatactgaagccagcgagcaaggacattcttcaaaatatttatgattaatatgttaaggataatagaggaAATCATGGGCAAACTATTTCATaatccccagaaagatcaatcatacaa--agagagaaaacacgaatgaacactgtgagaagggacaacttataaaaccacagattttattaaaatgaaaataagagaatattagacacaacttcatgacaataccttttaaaatttaggtgcaatgaaatgagttcttgaaaaacacagttgaacaaagccaacagaaaactaagtagaaaatataaatagtcctctatccattaagaaattgaattttaattaaattccttcccaccagaaaaacttctt-accacatttcct--cccatcaattctttc-aaaacttaaaaaaggaatGTCAGTCCTATATagtcatcccttggtatccttttgggctgggttctaggacccctgtggataccaaaatctgtggattctctggtcccatgtataaaatggcctactatttgcctactacctatgcatatcatcccatatactttaaatcatctctagattacttacaatacctagtgcaatgtacatga-ttgtaaacagtagttatactatattgtttaggaaataacgacaag-aaaatgtctgtacatcttca-gtacag------atgtaaccactgtcagtaggcctaactacagagtacacaacagcagcaacataaca-tttccaatcctcaggtagttgaattcacagatgtggaacacacagacatggaggacagactgTCTTATAT
s rheMac8.chr4              31106700 831 + 172585720 aatcaacagaagcacactc--agatgatctggatactgaagccagtgagcaaggacattctttaaaatatttattattaatatgttaaggataatagaggaaaagatgagcaaactatttcacaatccccagaaagatcaatc--acaa--aaagagaaaacacgaatgaacactgtgagaagggacaacttataaaaccacagattttattaaaacaaaaataagagaatattagacaaaacttcatgataataccttttaaaatttaggtgcaatgaaatgaattcttgaataacacagctgaataaagccaacagaaaactagatagaaaatataaatagtcctctatccattaagaaattgaattctaattaaattccttcccaccagaaaaacttcttgaccacatttctt--cccgtcaattctttcaaaaacttaaagaagaaatgtcagtcttataTagtcatcccttggtatccttttgggatgggttctaggacccctgtggataccaaaatctatgggtgctctggtctcatgtataaaatggcctagtatttgcctactacctatgtgcatcatcctatatacttaaaatcatct-tagattacttacaacacctagtgcaatgtccatga-ttgtaaacaatagttatactataatgtttaggaaatgatgacaag-aaaatgtctgtgcatcttca-gtacag------atgtaaccactgtaggtagtcctaactacatagtacacatcagcagcaacacaaca-tttccaatcctcaggcggttgaattcacagatgtggaacacacagacatagaggacagaccgTCTTATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              30398758 831 - 170955103 aatcaacagtagcacacgc--agatgatctggatactgaagccagtgagcaagggcattctttaaaatatttattattaatatgttaaggataatagaggaaaagatgagcaaactatttcacaatccccagaaagatcaatc--acaa--aaagagaaaacacgaatgaacactgtgagaggggacaacttataaaaccacagattgtagtaaaacaaaaataagagaatattagacacaacttcatgacaataccttttaaaatttaggtgcaatgaaatgaattcttgaataacacagctgaataaagccaacagaaaactagatagaaaatataaatagtcctctatccattaagaaattgaattctaattaaattccttcccaccagaaaaacttcttgaccacatttctt--cccatcaattatttcaaaaacttaaagaagaaatGTCCGTCTTATATagtcatcccttggtatccttttgggatgggttctaggacccctgtggataccaaaatctatggatgctctggtctcatgtataaaatggcctagtatttgcctactacctatgtgcatcatcctatatactttaaatcatct-tagattacttacaacacctagtgccatgtacatga-ttgtaaacaatagttacactataatgtttaggaaatgatgacaag-aaaatgtctgtgcatcttca-gtacag------atgtaaccactgtaggtagtcctaactacatagtacacatcagcagcaacacaaca-tttccaatcctcaggcagttgaattcacagatgtggaacacacagacatagaggacagaccgTCTtatat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      653369 831 +   1495729 aatcaacagaagcacacgc--agatgatctggatactgaagccagtgagcaaggacattctttaaaatatttattattaatatgttaaggataatagaggaaaagatgagcaaactatttcacaatccccagaaagatcaatc--acaa--aaagagaaaacacgaatgaacactgtgagaggggacaacttataaaaccacagattgtagtaaaacaaaaataagagaatataagacacaacttcatgacaataccttttaaaatttaggtgcaatgaaatgaattcttgaataacacagctgaataaagccaacagaaaactagatagaaaatataaatagtcctctatccattaagaaattgaattctaattaaattccttcccaccagaaaaacttcttgaccacatttctt--cccatcaattctttcaaaaacttaaagaagaaatGTCCGTCTTATATagtcatcccttggtatccttttgggatgggttctaggacccctgtggctaccaaaatctatggatgctctggtctcatgtataaaatggcctagtatttgcctactacctatgtgcatcatcctatatactttaaatcatct-tagattacttacaacacctagtgcaatgtacatga-ttgtaaacaatagttacactataatgtttaggaaatgatgacaag-aaaatgtctgtacatcttca-gtacag------atgtaaccactgtaggtagtcctaactacatagtacacatcagcagcaacacaaca-tttccaatcctcaggcagttgaattcacagatgtggaacacacagacatagaggacagaccgTCTTATAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      754638 815 -    863181 aatcaacagaagcacactc--agatgatctggatactgaagccagtgagcaaggacattctttaaaatatttattattaatatgttaaggataatagaggaaaagatgagcaaactatttcacaatccccagaaagatcaatc--acaa--aaagagaaaacacgaatgaacactgtgagaagggacaacttataaaaccacagattttattaaaacaaaaataagagaatattagacacaacttcatgacaataccttttaaaatttaggtgcgatgaaatgagttcttgaataacacagctgaataaagccaacagaaaactagatagaaaatataaatagtcctctatccattaagaaattgaattctaattaaattccttcccaccagaaaaacttcttgaccacatttctt--ctcgtcaattctttcaaaaacttaaaaaaggaatgtcagtcttataTagtcatcccttggtatccttttgggatgggttctaggatccctgtggataccaaaatctatgggtgctctggtctcatgtataaaatggcctagtatttgcctactacctatgtgcatcatcctatatactgtaaatcatct-tagattacttacaacacctagtgcaatgtacatga-ttgtaaacaatagttatactataatgtttaggaaataacaa-----------------catcttca-gtacag------atgtaaccactgtaggtagtcctaactacatggtacacatcagcagcaacacaaca-tttccaatcctcaggcagctgaattcacagatgtggaacacacagacatagaggacagaccgTCTTATAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29889945 831 -  71996105 aatcaacagaagcacacgc--agatgatctggatactgaagccagtgagcaaggacattctttaaaatatttattattaatatgttaaggataataaaggaaaagatgagcaaactatttcacaatccccagaaagatcaatc--acaa--aaagagaaaacacgaatgaacactgtgagaagggacaacttataaaaccacagattttattaaaacaaaaataagagaatattagacacaacttcatgacaataccttttaaaatttaggtgcaatgaaatgaattcttgaataacacagctgaataaagccaacagaaaactagatagaaaatataaatagtcctctatccattaagaaattgaattctaattaaattccttcccaccagaaaaacttattgaccacatttctt--cccgtcaattctttcaaaaacttaaaaaaagaaGGTCAGTTTTATATagtcatcgcttggtatccttttgggatgggttctaggacccctgtggataccaaaatctatggatgctctggtctcatgtataaaatggcctagtatttgcctactacctatgtgcatcatcctatatactttaaatcatct-tagattacttacaacacgtagttcaatgtacatga-ttgtaaacaatagttacactataatgtttaggaaatgatgacaag-aaaatgtctgtacatcttca-gtacag------atgtaaccactgtaggtagccctaactacatagtacacatcagcagcaacacaacc-tttccaatcctcaggcagctgaattcacagatgtggaacacacagacatagaggacagaccgTCTtatat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      663829 815 -    735854 aatcaacagaagcacactc--agatgatctggatactgaagccagcgagcaaggacattctttaaaatatttattagtaatatgttaaggataatagaggaaaagatgagcaaactatttcacaatccccagaaagatcaatc--acaa--aaagagaaaacacaaatgaacactgtgagaagggacaacttataaaaccacagattttattaaaacaaaaataagagaatattagacacaacttcatgacaataccttttaaaatttaggtgcaatgaaatgagttcttgaataacacagctgaataaagccaacagaaaactagatagaaaatataaatagtcctctatccattaagaaattgaattctaattaaattccttcccaccagaaaaacttcttgaccacatttctt--ctcgtcaattctttcaaaaacttaaaaaaggaatgtcagtcttataTagtcatcccttggtatccttttgggatgggttctaggatccctgtggataccaaaatctatgggtgctctggtctcatgtataaaatggcctagtatttgcctactacctatgtgcatcattctatatactgtaaatcatct-tagattacttacaacacctagtgcaatgtacatga-ttgtaaacaatagttatactataatgtttaggaaataaca-----------------acatcttca-gtacag------atgtaaccactgtaggtagtcctaactacatggtacacatcagcagcaacacaaca-tttccaatcctcaggcagctgaattcacagatgtggaacacacagacatagaggacagaccgTCTTATAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      547518 820 -   1829203 aatcaacagaagcacactc--agatgatctggatactgaagccagcgagcaaggacattctttaaaatatttgttattaatatgttaaggataata-----------gagcaaactatTTCACaatccccagaaagatcaatc--acaa--aaagagaaaatacgaatgaacactgtgagaagggacaacttataaaaccacagattttattaaaacaaaaataagagaatattagacacaacttcatgacaataccttttaaaatttaggtgcagtgaaatgaattcttgaataacacagctgaataaagccaacagaaaactagatagaaaatataaatagtcttctatccattaagaaattgaattctaattaaattccttcccaccagaaaaacttcttgaccacatttctt--cccgtcaattctttcaaaaacttaaaaaaggaatgtcagtcttataTagtcatcccttggtatccttttgggatgggttctaggacccctgtggataccaaaatctgtggatgctctggtctcatgtataaaatggactagtatttgcctactacctatgtgcatcatcccatagactttaaatcatct-tagattacttacaacacctagtgcaatgtacatga-ttgtaaacaatagttacactataatgtttaggaaataatgacaag-aaaatgtctgtacatcttca-gtacag------atgtaaccactgtaggtagccctaactacatagtacacatcagcagcaacataaca-tttccaatcctcaggcagctgaattcacagatgtggaacacacagacatagaggacagactgCCTTATAT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128          25262363 842 -  25516302 aatcaacagaagcagactcagagatgacctggatattgaagccagcaagcaaggacattcttcaaaatatttatgatcaatatgttaaggaaaatagaggaaaaaacaggcaatctATTTCAAAATCCCCTGAAAGAT-AATT--ATAAGGACagagaaaacacaagtgaacactatgagaagggaca--ttataaaactgtagattttattgaaacaaaaataagagaatgttagacacagcttcatggcaagatcttttacaatttaggtaaaatgacatgagttcttgaaaaagatgtttgaacaaagccaacagaaaactaaatagaaaatataaatagtaacatatccatcaagaaattgagttacaaataaattccttcccaccagaaaaactccttgcccagatttctttacctgtcagttctttcaaaaacttCAAATAGGCTGGTCAGTCTTACAcagtcttcccttggta-ctttttgagatgggttctagagcatctgtggataccaaaatccatggatgctcaggttccatatataaagtagcctagtattttcccgttatctatgcatatccttccatatacttt-aatcatctctagattacttataagttctaatacaatgtaaatgatttgtaaatagttgttatattatattgcttagaaaataatcacaagaaaaatgtctgtacatcttcatgtacagatgAGAATGTAACCATTATAGGTAGTCCTAACTGCATAGTATACATCAGCAACAACATAACATttttcaatcctcggatagttgaattcacagatgtcgaacccacagacacaaaag-cagactCTGtaatat
i saiBol1.JH378128         C 0 I 6124
e otoGar3.GL873550          18203763   0 -  18854210 I
e aotNan1.NW_018496901v1      287363 35491 -    486031 I
e cebCap1.NW_016107755v1     1103983 31740 -   1771730 I
e calJac3.chr4              30685650 23561 + 171630274 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=677702.000000
s hg38.chr6_GL000254v2_alt   1745941 275 +   4827813 TTTATATAATGAAGAGTggccaggcgcggtggctcatgcctgtaatcccagcacttt--gggaggccgagatgggcagatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaacctcatctctactaaaaatac-aaaaaaattagctgggcgtgatgacaggtgcctgtaatcccagctactcaagagactaaggcaggagaatcgcttgaacctgA-TAATTGCTAGGCTTTGAGTAAAGTAGTTTGACCTTTATAATGTGACC
s rheMac8.chr4              31107531 275 + 172585720 TTTATATAATGAAGAGTggccaggtgcggtggcttatgcctgtaatccccatacttt--gggaggccggggtgggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaatctcatctctactaaaaatac-aaaaaaattagctgggcgtgatgacaggtgcctgtaatcccagctactcaggagactaaggcaggagaatcgcttgaacctgA-TAATTGCtaggctttgagtaaagtagattgacctctataatgtgACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              30399589 275 - 170955103 tttatataatgaagagtggccaggtgcggtggctcatgcctgtaatccccatacttt--gggaggccggggtgggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaatctcatctctactaaaaatac-aaaaaaattagctgggcgtgatgacaggtgcctgtaatcccagctactcaggagactaaggcaggagaatcgcttgaacctga-taattgctaggctttgagtaaagtagattgacctctataatgtgACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      654200 275 +   1495729 TTTATATAATGAAGAGTggccaggtgcggtggctcatgcctgtaatccccatacttt--gggaggccggggtgggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaatctcatctctactaaaaatac-aaaaaaattagctgggcgtgatgacaggtgcctgtaatcccagctactcaggagactaaggcaggagaatcgcttgaacctgA-TAATTGCtaggctttgagtaaagtagattgacctctataatgtgACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      755453 276 -    863181 TTTACATAATGAAGAGTggccaggcgcagtggctcatgcctgtaatccccgtacttt--gggaggccgaggtgggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaatctcatctctactaaaaatacaaaaaaaattagctgggtgtgatgacaggtgcctgtaatcccagctagtcaggagacgaaggcaggagaatcacttgaacctgA-TAATTGCtaggctttgagtaaagtagattgacctctataatgtgACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29890776 278 -  71996105 tttacataatgaagagtggccaggcgcggtggctcatgcctataatccctgcactttgggggaggccaaggtgggcagatcacctgaggtcaggagttcgagaccagcctagccaacatggtgaaatctcatctctactaaaaatacaaaaaaaattagctgggtgtgatgacaggtgcctataatcccagctactcacaagactaaggcaggagaatcgcttgaacccga-taattgctaggctttgagtaaagtagattgacctctataatgtgACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      664644 277 -    735854 TTTACATAATGAAGAGTggccaggcgcggtggctcatgcctgtaatccccgtacttt--gggaggccgaggtgggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaatctcatctctactaaaaatacaaaaaaaattagctgggtgtgatgacaggtgcctgtaatcccagctactcagaagactaaggcaggagaatcgcttgaacctgATTAATTGCtaggctttgagtaaagtagattgacctctataatgtgACC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      548338 275 -   1829203 TTTATATAATGAAGAGTggccaggcacggtggctcatgcctgtaatccccgtacttt--gggaggctgaggtgggcagatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaactctcatctctactaaaaatac-aacaaaattagctgggcatgatgacaggtgcctgtaatcccaggtactcaggagacgaaggcaggagaatcgcttgaacctgA-TAATTGCtaggctttgagtaaagtagattgacctctataatgAGACA
i colAng1.NW_012115577v1   C 0 I 6
e saiBol1.JH378128          25263205 6124 -  25516302 I
e otoGar3.GL873550          18203763   0 -  18854210 I
e aotNan1.NW_018496901v1      287363 35491 -    486031 I
e cebCap1.NW_016107755v1     1103983 31740 -   1771730 I
e calJac3.chr4              30685650 23561 + 171630274 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=13536.000000
s hg38.chr6_GL000254v2_alt   1746216 7 +   4827813 CTCCCTA
s rheMac8.chr4              31107806 7 + 172585720 CTCCCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              30399864 7 - 170955103 CTCCCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      654475 7 +   1495729 CTCCCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      755729 7 -    863181 CTCCCCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29891054 7 -  71996105 CTCCCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      664921 7 -    735854 CTCCCCA
i manLeu1.NW_012107142v1   C 0 C 0
e saiBol1.JH378128          25263205 6124 -  25516302 I
e otoGar3.GL873550          18203763 0 -  18854210 I
e aotNan1.NW_018496901v1      287363 35491 -    486031 I
e cebCap1.NW_016107755v1     1103983 31740 -   1771730 I
e calJac3.chr4              30685650 23561 + 171630274 I
e colAng1.NW_012115577v1      548613 6 -   1829203 I
e nomLeu3.chr1a             47781820 5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=1339651.000000
s hg38.chr6_GL000254v2_alt   1746223 542 +   4827813 AACAAGATGGAACTCTGCAGCAGACATCCTGGGATTTGAACTGCAATATCAGtcaactgacccacaaagagctggttggtttgtgtacagcatttgcaagatgagtggacaacatcctgtttggaagtctacccctttgatcaaagaagttaaaaacaggacag-ttttttt------------ttttttt----tggttgaattgcatgatgttttctgagaagtgatgaaagaattgaacaatgacaaaagtccctatgtcttagtttttactgacttatgggcattgactgatggcctggccatataattaagagagcaatggaaaactggcctatgaaaagaatacccgtataggacacagtcctgtggaaatcactatggtaatttgaggggtgcattaatgtaaggcatgttgatgtctgatataaattgggtgttgtccccacccaaatctcatgttgagatataatccccagtgttggaggtgaggcctcgagggaggtgattgcatcatgggggtggcttctcatgaatcgtttagtaccattccctCAG
s rheMac8.chr4              31107813 540 + 172585720 AACAACATAGAACTCTGCAGCAGACATCCTGGGATTTGAACTGCAATATCAGtcacccgacccacaaagagctggttggtttgtgtatagcatttgcaagatgagcggacaacaccctgtttggaagtccacccctttgatcaaagaagttaaaaacaggacagtttttttt------------tgttgtt------gttgaattgcatgatgttttctgagaagtgatgaaagaattgaacaatgacagaagtgcctatgttttagttttt-ctgacttatgggcagtgactgatggcctggccatataattaagagagcaatgaaaaactggcctatgaaaagaaaacccacataggacacagtcctatggaaatcactatggtaatttgaggggtgcattaatgtaagacatgttgatgtctgatataaattggatgttgtccccacccaaatcacatgttgagatataatccccagtgttggaggtgaggcctggagggaggtgattggatcatggggatggcttctcatgaatggtttagtaccatcccctcgg
i rheMac8.chr4             C 0 I 4
s macFas5.chr4              30399871 539 - 170955103 AACAACATAGAACTCTGCAGCAGACATCCTGGGATTTGAACTGCAATATCAGtcacctgacccacaaagagctggttggtttgtgtatagcatttgcaagatgagcggacaacatcctgtttggaagtccacccctttgatcaaagaagttaaaaacaggacag-ttttttt------------tgttgtt------gttgaattgcatgatgttttctgagaagtgatgaaagaattgaacaatgacagaagtgcctatgttttagttttt-ctgacttatgggcagtgactgatggcctggccatataattaagagagctatgaaaaactggcctatgaaaagaaaacccacataggacacagtcctatggaaatcactatggtaatttgaggggtgcattaatgtaagacatgttgatgtctgatataaattggatgttgtccccacccaaatcgcatgttgagatataatccccagtgttggaggtgaggcctggagggaggtgattggatcatggggatggcttctcatgaatggtttagtaccatcccctcgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      654482 539 +   1495729 AACAACATAGAACTCTGCAGCAGACATCCTGGGATTTGAACTGCAATATCAGtcacctgacccacaaagagctggttggtttgtgtatagcatttgcaagatgagcggacaacatcctgtttggaagtccacccctttgatcaaagaagttaaaaacaggacag-ttttttt------------tgttgtt------gttgaattgcatgatgttttctgagaagtgatgaaagaattgaacaatgacagaagtgcctatgttttagttttt-ctgacttatgggcagtgactgatggcctggccatataattaagagagcaatgaaaaactggcctatgaaaagaaaacccacataggacacagtcctatggaaatcactatggtaatttgaggggtgcattaatgtaagacatgttgatgtctgatataaattggatgttgtccccacccaaatcacatgttgagatataatccccagtgttggaggtgaggcctggagggaggtgattggatcatggggatggcttctcatgaatggtttagtaccatcccctcag
i macNem1.NW_012012100v1   C 0 I 4
s cerAty1.NW_012002535v1      755736 539 -    863181 AACAACATAGAACTCTGCAGCAGACATCCTGGGATTTGAACTGCAATATCAGtcacctgacccacaaagagctggttggtttgtgtacagcatttgcaagatgagccgacaacatcctgtttggaagtccacccctttgatcaaagaagttaaaaacaggacag-ttttttt------------tgttgtt------gttgaattgcatgatgttttctgagaagtgatgacagaattgaacaatgacagaagtgcctatgttttagttttt-ctgacttatgggcagtgactgatggcctggccatataattaagagagcaatgaaaaactggcctatgagaagaaaacccacataggacacagtcctatggaaatcactatggtaatttgaggggtgcattaatgttagatatgttgatgtctgatataaattggatgttgtccccatccaaatcgcatgttgagatataatgcccagtgttggaggtgaggcctggagggaggtggttggatcatggggatggcttctcatgaatggtttagtaccatcccctcag
i cerAty1.NW_012002535v1   C 0 I 4
s chlSab2.chr17             29891061 551 -  71996105 AACAAGATAGAACTCTGCAGCAGACATCCTGGGATTTGAACTGCAATATCAGtcacctgacccacaaagagctggttggtttgtgtacagcatttgcaagatgagcggacaacatcctgtttggaagtccacccctttgatcaaaaaagttaaaaacaggacag-tttttttttgttttttttgttttttt------gttgaattgcatgatgttttctgagaagtgatgaaagaattgaacaatgacagaagtgcctatgttttagttttt-ctgacttatgggcagtgactgatggcctggccatataattaagagagcaatgaaaaactggcctatgaaaagaaaacccacataggacacagtcctatggaaatcactatggtaatttgaggggtgcattaatgtaagacatgttgatgtctgatataaattggatgttgtccccacccaaatcgcatgttgagatataatccccagtgttggaggtgaggcctggagggaggtgactggatcatgggggtggcttctcatgaatggtttagtaccatcccctcag
i chlSab2.chr17            C 0 I 4
s manLeu1.NW_012107142v1      664928 539 -    735854 AACAACATAGAACTCTGCAGCAGACATCCTGGGATTTGAACTGCAATATCAGtcacctgacccacaaagagctggttggtttgtgtacagcatttgcaagatgagccgacaacatcctgtttggaagtccacccctttgatcaaagaagttaaaaacaggacag-tttttgt------------tgttgtc------gttgaattgcatgatgttttctgagaagtgatgacacaattgaacaatgacagaagtgcctatgttttagttttt-ctgacttatgggcagtgactgatggcctggccatataattaagagagcaatgaaaaactggcttatgagaagaaaacccacataggacacagtcctatggaaatcactatggtaatttgaggggtgcattaatgttagacatgttgatgtctgatataaattggatgttgtccccacccaaatcgcatgttgagatataatgcccagtgttggaggtgaggcctggagggaggtggttggatcatggggatggcttctcacgaatggtttagtaccatcccctcag
i manLeu1.NW_012107142v1   C 0 I 4
s colAng1.NW_012115577v1      548619 545 -   1829203 AACAAGATAGAACTCTGCAGCAGACATCCTGGGATTTGAACTGCAATATCAGtcacctgacccacaaagagctggttggtttgtgtacagcatttgcaagatgagtggacaacatcctgtttggaagtctacccctttgatcaaagaagttaaaaacaggacag-ttttttt------------ttttttttttttggttgaattgcatgatgttttctgagaagtgatgaaagaattgaacaatgacagaagtgcctatgttttagttttt-ctgacttatgggcactgactgatggcctggccacataattaagagagcaatgaaaaactggcctatgaaaagaaaacccacataggacacagtcctatggaaatcactatggtaatttgaggggtgcattaatgtaagacatgttgatgtctgatataaattggatgttgtccccacccaaatcgcatgttgagatataatccccagtgttggaggtgaggcctggagggaggtgatttgatcataggggtgacttctcatgaatggtttagtaccatctcctcag
i colAng1.NW_012115577v1   I 6 I 4
e saiBol1.JH378128          25263205 6124 -  25516302 I
e otoGar3.GL873550          18203763   0 -  18854210 I
e aotNan1.NW_018496901v1      287363 35491 -    486031 I
e cebCap1.NW_016107755v1     1103983 31740 -   1771730 I
e calJac3.chr4              30685650 23561 + 171630274 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=-978.000000
s hg38.chr6_GL000254v2_alt   1746765 13 +   4827813 AATAGTTCAATTA
s macFas5.chr4              30400410  4 - 170955103 tg---------ct
i macFas5.chr4             C 0 C 0
e saiBol1.JH378128          25263205 6124 -  25516302 I
e otoGar3.GL873550          18203763  0 -  18854210 I
e aotNan1.NW_018496901v1      287363 35491 -    486031 I
e cebCap1.NW_016107755v1     1103983 31740 -   1771730 I
e calJac3.chr4              30685650 23561 + 171630274 I
e colAng1.NW_012115577v1      549164  4 -   1829203 I
e manLeu1.NW_012107142v1      665467  4 -    735854 I
e chlSab2.chr17             29891612  4 -  71996105 I
e cerAty1.NW_012002535v1      756275  4 -    863181 I
e macNem1.NW_012012100v1      655021  4 +   1495729 I
e rheMac8.chr4              31108353  4 + 172585720 I
e nomLeu3.chr1a             47781820  5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=4467685.000000
s hg38.chr6_GL000254v2_alt   1746778 1793 +   4827813 GTTCAATGCCCCTCAGAATAACCCTCCTCCAGGTTTGGAAGGTGATTGAAATCAACAAGCATTTATTTCTAAGTGCTTTCCAGgtgtacctgtatttccagctacaagaagaactgaggcagaaggatctcttgagcccaggagtcttagttttgcctgagcaacTTTTGAGTCCA---GGGAAAAATATCAATACCACATCTC--AAAAAAatccacgtttgcttgtggtgatcacctgggtccatgaaataagtagacactgagggctgcagcaatgcagagataggctgaatcaagatatattccttttacatcctccaactcacaggcacgaaatacccataaggactgttctgtttaagaagagacagagacagcatatggctatgtagcaaattctctcatgggaaggtcttgaaaatagatagctggcaaattagactgataccagtacccctaggaggcagcaaatgggtcttggcaggaatagatactgaccctggagtaagcattgcttagctggtggtagatgtgttatcaaactgaactggggc-ccactcacctggtgcaataaaggcaaacatccacactgagattttgtagtgggagaaaggaaggcgtttatttgcaaggcaccaagcaaggagaatcgggcagctcacacttaagacctaacct--ccaatggcttacaagcaagagtttttaaggcaggagtaaatttcagcaaagccgagttgcaggcaacatcaaaaatcaatgcatagaaattacacactggtttggcctaaaaaggtgggatatcctgatgagggatcgtacaggtcataggtggattgaaagattctctgatttgtgattggataaggagccaaagctttgtctacacacttaggggcagtagggaggaatgttcaggtctgctctgtggacctgactctttccaggcccctcaggaaaaaatttagaacaaagagtcacagtcagcattgagtcctcattttccccttatctgaggtctccctatcagtggctctgtttggtgagagtctgggttcctgaaaaactactcaaggacatatgttaagatgttctctttagtttctatagagaatcaaacatcttgggactctaacttccttggctattg-tttaagctatttttacctgcttgcttataaggtcactcacttgcttttcagggctggctaggtgcctggaatttctcttgaaggaactcaacattttcctttatttccatgttagggaggtctagcaggcttctaagataaatccctacttcatctcagatgcaaatgcttagagcactataatagaacctggacgggagatattgcaaccatttgcatcactgagtcacatttcttcacaccaggaaacacatttgcccaaaatgtccaacaatgttcagaaaaatattttgctcagaggaatagtttcatagagaataaaaatagtcaaatgacacattatttgtataaagcaggagtggggagacataagcatgaagggcgggcttacacacgttcatgagtgggctcacaccagacatgagtgtggaaaaaggagtgtccccactagagagtatcctcttttttcctgctggatcagggaaaggtgctagtatgacctgacatacgatttttcccatgacaagaggacactggaatgatgactagacttcacctcaactcgcctttctcatacctgattcagtggtcttaggacaagggatgcatataaaagtgcta-aaacaggaattattcctaagcaagaaag
s rheMac8.chr4              31108357 1788 + 172585720 gttcAATGCCCCTCAGAATAACTTCCCTCCAGGTTTGGAAGGTGATTGAAATCAACAAGCATTTATTTCTAAGTGCTTTCCGGgtgtacctgtaattccagctacaagaagagctgaggcagaaggatctcttgagcccaggagttttagttttgcctcagcaacttttgagtccaaccagggaaaatatcaataccacatctc--aaaaaaatccacgtttgcttgtggtgatcacctgattccatgaaataagtagacactgagggctgcagcaatgcagagatgggctgaatcaagacatattccttttacatcctccacctcacaggcacgaaatacccctaaggactgttctgtttaagaagagactgagacagcatatggctatgtggcagattctctcatgggaaaggcttggagatagatagctggcaaattagactgataccagtattcctaggaggcagcaaatgggtcttggcaggaatagata------ctggagtgagcattgatcagctggtggtagatatgttatcaaactgaact-gggc-ccactcgcctggtgcaacaaaggtaaacgtccacactgagattttgtagtgggagaaaggaaggcatttatttgcaaggcaccaagcaaggagaatcgggcagctcacacttaagacctaacctccccagtggcttacaagcaagagtttttaagacaggggtaaagttcaggaaagcagagtgacaggcaacatcaaaaatcaatgcatagaaattacacactggtttggcctaaaaaggtggggtatcctgacgagggatcttacaggtcataggtggattgaaagattctctgatttgtgattggataaggagctaaagctttgtctacacacttgagggcagaagggaggaatgttcaggtatggtctgtggacctgactgtctccaggcccttcaggaacaaatttagaacaaagaatcacagtcagcattgagtcctcattttctccttttctgaggtctcttcatccctggctctgtttggtgagaggctggattcttgaaaaactactcaag-----atgttaagatgttctctttagtttctataaagaatcaaacatcttgtaactctagctcccttggctattgttttaagctatttttacctgcttgcttacaagttcactcacttgctttttagggctggctagatgcctggaatttctcttgaaggaactcaacattttcctttatttccatgttagggaagcctggcaggcttctaagagaaatccctacttcatctcagatgcaaatgcttcgagtactattatagaacctggatggaagatactgcaaccatttgcatcactgagtcacatttcttcacagcaggaaacacacttgcccaaaatgtccaacagtgttcagaaaaatattttgctcagaggaatagtttcatagagaataaaaatggtcagttgacccattgcttttataaagcaggagtggggagacataagcatgaagggcgggcttacacaccttcatgagtgtgctcacactggacacaagtgtggacaaaggagtgtccccactagagagtgtcctcttttttcctgctggatcagggaaaggtgctggtgtgactctacatacaatttttcccatggcaagaggacactggagtgatgactatacttcacctcaactctcctttctcatacctgaagcagtggtcttacgactagggatgcaaataaaagttccagaaacaggaattattcctaagcaagaaac
i rheMac8.chr4             I 4 C 0
s macFas5.chr4              30400414 1788 - 170955103 gttcAATGCCCCTCAGAATAACTTCCCTCCAGGTTTGGAAGGTGATTGAAATCAACAAGCATTTATTTCTAAGTGCTTTCCAGgtgtacctgtaattccagctacaagaagagctgaggcagaaggatctcttgagcacaggagttttagttttgcctcagcaacTTTTGAGTCCAACCAGGGAAAATATCAATACCACATCTC--AAAAAAatccacgtttgcttgtggtgatcacctgattccatgaaataagtagacactgagggctgcagcaatgcagagatgggctgaatcaagacatattccttttacatcctccacctcacaggcacaaaatacccctaaggactgttctgtttaagaagagacagagacagcatatggctatgtggcagattctctcatgggaaaggcttggagatagatagctggcaaattagactgataccagtattcctaggaggcagcaaatgggtcttggcaggaatagata------ctggagtgagcattgatcagctggtggtagatatgttatcaaactgaact-gggc-ccactcgcctggtgcaacaaaggtaaacgtccacactgagattttgtagtgggagaaaggaaggcatttatttgcaaggcaccaagcaaggagaatcgggcagctcacacttaagacctaacctccccagtggcttacaagcaagagtttttaagacaggggtaaagttcaggaaagcagagtgacaggcaacatcaaaaatcaatgcatagaaattacacactggtttggcctaaaaaggtggggtatcctgatgagggatcttacaggtcataggtggattgaaagattctctgatttgtgattggataaggagctaaagctttgtctacacacttgagggcagaagggaggaatgttcaggtatggtctgtggacctgactgtctccaggcccttcaggaacaaatttagaacaaagaatcacagtcagcattgagtcctcattttctccttttctgaggtctcttcatccctggctctgtttggtgagaggctggattcttgaaaaactactcaag-----atgttaagatgttctctttagtttctataaagaatcaaacatcttgtaactctagctcccttggctattgttttaagctatttttacctgcttgcttacaagttcactcacttgctttttagggctggctagatgcctggaatttctcttgaaggaactcaacattttcctttatttccatgttagggaagcctggcaggcttctaagagaaatccctacttcatctcagatgcaaatgcttcgagtactattatagaacctggatggaagatactgcaaccatttgcatcactgagtcacatttcttcacagcaggaaacacacttgcccaaaatgtccaacagtgttcagaaaaatattttgctcagaggaatagtttcatagagaataaaaatggtcagttgacccattgcttttataaagcaggagtggggagacataagcatgaagggcgggcttacacaccttcatgagtgtgctcacactggacacaagtgtggacaaaggagtgtccccactagagagtgtcctcttttttcctgctggatcagggaaaggtgctggtgtgactctacatacaacttttcccatggcaagaggacactggagtgatgactatacttcacctcaactctcctttctcatacctgaagcagtggtcttacgactagggatgcaaataaaagttccagaaacaggaattattcctaagcaagaaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      655025 1788 +   1495729 gttcAATGCCCCTCAGAATAACTTCCCTCCAGGTTTGGAAGGTGATTGAAATCAACAAGCATTTATTTCTAAGTGCTTTCCGGgtgtacctgtaattccagctacaagaagagctgaggcagaaggatctcttgagcccaggagttttagttttgcctcagcaacttttgagtccaaccagggaaaatatcaataccacatctc--aaaaaaatccacgtttgcttgtggtgatcacctgattccgtgaaataagtagacactgagggctgcagcaatgcagagatgggctgaatcaagacatattccttttacatcctccacctcacaggcacgaaatacccctaaggactgttctgtttaagaagagacggagacagcatatggctatgtggcagattctctcatgggaaaggcttggagatagatagctggcaaattagactgataccagtattcctaggaggcagcaaatgggtcttggcaggaatagata------ctggagtgagcattgatcagctggtggtagatatgttatcaaactgaact-gggc-ccactcgcctggtgcaacaaaggtaaacgtccacactgagattttgtagtgggagaaaggaaggcatttatttgcaaggcaccaagcaaggagaatcgggcagctcacacttaagacctaacctccccagtggcttacaagcaagagtttttaagacaggggtaaagttcaggaaagcagagtgacaggcaacatcaaaaatcaatgcatagaaattacacactggtttggcctaaaaaggtggggtatcctgacgagggatcttacaggtcataggtggattgaaagattctctgatttgtgattggataaggagctaaagctttgtctacacacttgagggcagaagggaggaatgttcaggtatggtctgtggacctgactgtctccaggcccttcaggaacaaatttagaacaaagaatcacagtcagcattgagtcctcattttctccttttctgaggtctcttcatccctggctctgtttggtgagaggctggattcttgaaaaactactcaag-----atgttaagatgttctctttagtttctataaagaatcaaacatcttgtaactctagctcccttggctattgttttaagctatttttacctgcttgcttacaagttcactcacttgctttttagggctggctagatgcctggaatttctcttgaaggaactcaacattttcctttatttccatgttagggaagcctggcaggcttctaagagaaatccctacttcatctcagatgcaaatgcttcgagtactattatagaacctggatggaagatactgcaaccatttgcatcactgagtcacatttcttcacagcaggaaacacacttgcccaaaatgtccaacagtgttcagaaaaatattttgctcagaggaatagtttcatagagaataaaaatggtcagttgacccattgcttttataaagcaggagtggggagacataagcatgaagggcgggcttacacaccttcgtgagtgtgctcacactggacacaagtgtggacaaaggagtgtccccactagagagtgtcctcttttttcctgctggatcagggaaaggtgctggtgtgactctacatacaacttttcccatggcaagaggacactggagtgatgactatacttcacctcaactctcctttctcatacctgaagcagtgctcttacgactagggatgcaaataaaagttccagaaacaggaattattcctaagcaagaaac
i macNem1.NW_012012100v1   I 4 C 0
s cerAty1.NW_012002535v1      756279 1795 -    863181 gttcAATGCCCCTCAGAATAACTTCCCTCCAGGTTTGGAAGGTGATTGAAATCAACAAGCATTTATTTCTAAGTGCTTTCCGGgtgtacctgtaattccggctacaagaagagctgaggcagaaggatctcttgagcccaggagttttagttttgcctccacaacttttgagtccaaccagggaaaatatcaataccacatctc--aaaaaaatccacgtttgcttgtggtgatcacctgattccatgaaataagtagacactgagggctgcagcaatgcagagatgggctgaatcaagacatattccttttacatcctccacctcacaggcacgaaatacccctaaggactgttctgtttaagaagagacagagacagcatatggctatgtggcagattctctcatgggaagggcttggaaatagatagctggcaaattagactgataccagtatccctaggaggcagcaaatgggtcttggcaggaatagatactgaccctggggtgagcattgttcagctggtggtagatatgttatcaaactgaactggggc-ccactcacctggtgcaacaaaggtaaacgtccacactgagattttgtagtgggagaaaggaaggcatttatttgcaaggcaccaagcaaggagaatcgggcagctcacacttaagacctaatctccccaatggcttacaagcaagagtttttaagacaggggtaaagttcaggaaagcagagttacaggcaatatcaaaaatcaatgcatagaaattacacactggtttgacctaaaaaggtggggtatcctgatgagggatcttacaggtcataggtggattgaaagattctctgatttgtgattggataaggagctaaagctttgtctacacacttgagggcagaagggaggaatgttcaggtatggtctgtggacctgattgtctccaggcccttcaggaacaaatttagaataaagaatcacagtcagcattgagtcctcattttccccttatctgaggtctcctcatccctggctctgtttggtgagaggctggattcttgaaaaactactcaag-----atgttaagatgttctctttagtttctataaagaatcaaacatcttgtaactctagctcccttggctattgttttaagctatttttacctgcttgcttacaagttcactcacttgctttttagggctggctagatgcctggaatttctcttgaaggaactcaacattttcctttatttccatgttagggaagcctggcaggcttctaagagaaatccctacttcatctcagatgcaaatgcttcgagtactattatagaacctggatgggagatactgcaaccatttgcatcactgagtcacatttcttcacagtaggaaacacacttgcccaaaatgtccaacagtgttcagaaaaatattttgctcagaggaatagtttcatagagaataaaaatggtcagttgacccattgcttttataaagcaggagtggggagacataagcatgaagggtgggcttacacaccttcatgagtgtgctcacactggacacaagtgtggacaaaggagtgtccccactagagagtgtcctcttttttcctgctggatcagggaaaggtgctggtgtgactctacatacaatttttcccatggcaagaggacactgaagtgatgactatacttcacctcaactctcctttctcatacctgatgcagtggtcttacgactagggatgcaaataaaagttccagaaacaggaattattcctaagcaagaaac
i cerAty1.NW_012002535v1   I 4 C 0
s chlSab2.chr17             29891616 1780 -  71996105 gttcAATGCCCCTCAGAATAACTTCCCTCCAGGTTTGGAAGGTGATTGAAATCAACAAGCATTTATTTCTAAGTGCTTTCCAGgtgtacctgtaattccggctataagaagagctgaggcagaaggatctcttgagcccaagagttttagttttgcctcagcaacttttgagtccaaccagggaaaatatcaataccacatctcaaaaaaaaaTCCACGTTTGcttgtggtgatcacctgattctatgaaataagtagacactgagggctgcagcaatgcagagatgggctgaatcaagacatattccttttacatcctccacctcacaggcacgaaatacccctaaggactgttttgtttaagaagagagagagacagcatatggctatgtagcagattctctcatgggaagggcttggaaatagatagctggcaaattagactgataccagtatccctaggaggcagcaaatgggtcttggcaggaatagatactgaccctggagtgagcattgatcagctggtggtagatatgttatcaaactgaact-gggg-ccacttgcctggtgcaacaaaggtaaacatccacactgagattttgtagtaggagaaaggaaggcatttatttgcaaggcaccaagcaaggagaatcgggcagctcacacttaaga----------------gcttacaagcaagagtttttaagacaggggcaaagttcaggaaagcagagttacaggcaatatcaaaaatcaatgcatagaaattacacactggtttggcctaaaaaggtggggtaccctgatgagggatcttacaggtcataggtggattgaaagattctctgatttgtgattggataaggagctaaagctttgtctacacacttgagggcagaagggaggaatgttcaggtatggtctgtggacctgattctctccaggcccttcaggaacaaatttagaacaaagaatcacagtcagtattgagtcctcattttccccttatctgaggtctcctcatccctggctctgtttggtgagaggttggattcttgaaaaactactcaag-----atgttaagatgttctctttagtttctataaagaatcaaacatcttgtaactctagctcccttggctattgttttaagctatttttacctgcttgcttataagttcactcacttgctttttagggctggctagatgcctggaatttctcttgaaggaactcaacattttcctttatttccatgttagggaagcctggcaggcttctaagagaaatccctacttcatctcagatgcaaacgcttcgagtactattatagaacctggatgggagatactgcaaccatttgcatcactgagtcacatttcttcacagcaggaaacacatttgcccaaaatgtccaacagtgttcagaaaaatattttgctcagaggaatagtttcatagagaataaaaatggtcagttgacccattgcttttataaagcaggagtggggagacataagcatgaagggcgggcttacacaccttcatgagtgtgctcacactgaacacaagtgtggacaaaggagtgtccccactagagagtgtcctcttttttcctgctggatcagggaaaggtgctggtgtgactctacatacaatttttcccatggcaagaggacactggagtgatgactatacttcacctcaacgctcctttttcatacctgatgcagtggtcttacaactagggatgcaaataaaatttccagaaacaggaattattcctaagcaagaaac
i chlSab2.chr17            I 4 C 0
s manLeu1.NW_012107142v1      665471 1795 -    735854 gttcAATGCCCCTCAGAATAACTTCCCTCCAGGTTTGGAAGGTGATTGAAATCAACAAGCATTTATTTCTAAGTGCTTTCCGGgtgtacctgtaattccggctacaagaagagctgaggcagaaggatctcttgagcccaggagttttagttttgcctcagcaacttttgagtccaaccagggaaaatatcaataccacatctc--aaaaaaatccacgtttgcttgtggcgatcacctgattccatgaaataagtagacactgagggctgcagcaatgcagagatgggctgaatcaagacatattccttttacatccttcacctcacgggcacgaaatacccctaaggactgttctgtttaagaagagacagagacagcatatggctatgtggcagattctctcatgggaagggcttggaaatagatagctggcaaattagactgataccagtatccctaggaggcagcaaatgggtcttggcaggaatagatacagaccctggggtgagcattgttcagctggtggtagatatgttatcaaactgaact-ggggcccactcacctggtgcaacaaaggtaaacgtccacactgagattttgtagtgggagaaaggaaggcatttatttgcaaggcaccaagcaaggagaatcgggcagctcacacttaagacctaatctccccaatggcttacaagcaagagtttttaagacaggggtaaagttcaggaaagcagagttacaggcaatatcaaaaatcaatgcacagaaattacacactggtttgacctaaaaaggtggggtatcctgatgagggatcttacaggtcataggtggattgaaagattctctgatttgtgattggataaggagctaaagctttgtctacacacttgagggcagaagggaggaatgttcaggtatggtctctggacctgactgtctccaggcccttcaggaacaaatttagaacaaagaatcacagtcagcattgagtcctcattttccccttatctgaggtctcctcatccctggctctgtttggtgagaggctggattcttgaaaaactactcaag-----atgttaagatgttctctttagtttctataaagaatcaaacatcttgtaactctagctcccttggctattgttttaagctatttttacctgcttgcttacaagttcactcacttgctttttagggctggctagatgcctggaatttctcttgaaggaactcaacattttcctttatttccatgttagggaagcctggcaggcttctaagagaaatccctacttcatctcagatgcaaatgcttcgagtactattatagaacctggatggaagatactgcaaccatttgcatcactgagtcacatttcttcacagcaggaaacacacttgcccaaaatgtccaacagtgttcagaaaaatattttgctcagaggaatagtttcatagagaataaaaatggtcagttgacccattgcttttataaagcaggagtggggagacataagcatgaagggcgggcttacacaccttcatgagtgtgctcacactggacacaagtgtggacaaaggagtgtccccactagagagtgtcctcttttttcctgctggatcagggaaaggtgctggtgtgactctacatacaacttttcccatggcaagaggacactggagtgatgactatacttcacctcaactctcctttctcatacctgatgcagtggtcttacgactagggatgcaaataaaagttccagaaacaggaattattcctaagcaagaaac
i manLeu1.NW_012107142v1   I 4 C 0
s colAng1.NW_012115577v1      549168 1795 -   1829203 gttcAATGCCCCTCAGAATAACTTCCCTCTAGGTTTGGAAGGTGATTGAAATCAACAAGCATTTATTTCTAAGTGTTTTCCAGgtgtacctgtaattccagctacaagaagagctgaggcagaaggatctcttgagcccaggagttttagttttgcctcagcaacttttgagtccaaccagggaaaatatcaataccacatctc--aaaaaaatccacgtttgcttgtggtgatcacctgattccatgaaataagtagacactgagggctgcagcaatgcagagatgggctgaatcaagacatattcctttcacatcctccacctcatgggcacgaaatacccctaaagactgttctgtttaagaagagacagagacagcatatggctatgtggcagattctctcatgggaagggcttggaaatagatagctggcaaattagactgacaccagtatccctaggaggcagcaaatgggtcttggcaggaatagatactgaccctggagtgagcattgatcagctggtggtaggtatgttatcaaactaaactggggc-ccactcgcctggtgcaacaaaggtaaacatccacactgagattttgtagtgggagaaaggaaggcatttatttgcaaggcaccaagcaaggagaatcgggcagctcatgcttaagacccaacctccccaatggcttacaagcaagagtttttaagacaggggtaaagttcaggaaagcagagttacaggcaacatcaaaaatcaatgcatagaaattacacactggtttggactaaaaaggtgggatatcctgatgagggatcttacaggtcataggtggattgaaagattctctgatttgtgattggataaggaactaaagctttgtctacacacttgagggcagaagggaggaatgttcaggtatggtctgtggacctgattctctccaggcccttcaggaacaaattcagaacaaagaatcacagtcagcattgagtcctcattttccccttatctgaggtctcctcatccctggctctgtttggtgagaggctggattcttgaaaaactactcaag-----atgttaagatgttctctttagtttctataaagaatcaaacatcttgtaattctagctcccttggctattgttttaagctatttttacctgcttgcttataagttcactcacttgctttttagggctggctaggtgcctggaatttctcttgaaggaactcaacattttcctttatttccatgttagggaagcctggcaggcttctaagagaaatccctacttcatctcagatgcaaatgcttcgagtactattgtagaacctggatgggagatactgcaaccatttgcatcactgagtcacatttcttcacagcaggaaacacacttgcccaaaatgtccaacaatgttcagaaaaatattttgctcagaggaatagtttcatagagaataaaaatagtcagttgacacattgcttttataaagcaggagtggggagacataagcatgaagggtgggcttacacaccttcatgagtgtgctcacactggacacaagtgtggacaaaggagtgtccccactagagagtgacctcttttttcctgctggatcagggaaaggtgctggtgtgactctacatacaatttttcccatggcaagaggacactggagtgatgactatacttcacctcaactctcctttctcatacctgatgcatgggtcttacgactagggatgcaaataaaagttccagaaacaggaattattcctaagcaagaaac
i colAng1.NW_012115577v1   I 4 I 329
e saiBol1.JH378128          25263205 6124 -  25516302 I
e otoGar3.GL873550          18203763    0 -  18854210 I
e aotNan1.NW_018496901v1      287363 35491 -    486031 I
e cebCap1.NW_016107755v1     1103983 31740 -   1771730 I
e calJac3.chr4              30685650 23561 + 171630274 I
e nomLeu3.chr1a             47781820    5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=1022652.000000
s hg38.chr6_GL000254v2_alt   1748571 413 +   4827813 tgtaaatatattttaaaaccattatgcaagaattcctgagggcctggaggagtaggttgtgccttcactgcatctggcaaagttggggctaacactgaatgcagctatattgcctggggtcagatagccaactagttctctacctgcataaccctaccctctatgaactggaatggaccaacgagagacacttgctagaacagtattgctcccttcagtctaggccagcacagtagcagaacttaatgtttcttccaaaactattaatgtttggtataaatgaagtagaaggaggaatagtagctgagggtaaatgaatgaataaatgggttgtgtaatgaggaaaatccaatgttacatgaactccc------aaaaaaaagaggtataagcaagagatgatattgtctcttGACAAT
s rheMac8.chr4              31110145 413 + 172585720 tgtaaatatattttaaaaccattatgcaagaattcctaagggcctggaggagtaggttgtgcattcactgcatctggcaaagttgggaataacactgagtgcagctgtattgcccggggtcagatagccgctcagttctccacctgcataaccccaacctctacaaactggaatggactgacaggagacacttgctagaacagtattgctcccttcagtctaggccagcacagtagcagaacctaatgttccttccaaaactagaaatgtttggtgtaaatgaag-agaaggaggattagtagctgagggtaaatgaatgaataaactggttgtgtaataaggaaaatccaatgttacatgaactcct-----aaaaaaaaagaggtataagcaagagatgatactgtctcttGACAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              30402202 413 - 170955103 tgtaaatatattttaaaaccattatgcaagaattcctaagggcctggaggagtaggttgtgcattcactgcatctggcaaagttgggaataacactgagtgcagctgtattgcccggggtcagatagccgctcagttctccacctgcataaccctaacctctacaaactggaatggactgacaggagacacttgctagaacagtattgctcccttcagtctaggccagcacagtagcagaacctaatgttccttccaaaactagaaatgtttggtataaatgaag-agaaggaggattagtagctgagggtaaatgaatgaataaactggttgtgtaataaggaaaatccaatgttacatgaactcct-----aaaaaaaaagaggtataagcaagagatgatactgtctcttGACAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      656813 413 +   1495729 tgtaaataaattttaaaaccattatgcaagaattcctaagggcctggaggagtaggttgtgcattcactgcatctggcaaagttggggataacactgagtgcagctgtattgcccggggtcagatagccgctcagttctccacctgcataaccctaacctctacaaactggaatggactgacaggagacacttgctagaacagtattgctcccttcagtctaggccagcacagtagcagaacctaatgttccttccaaaactagaaatgtttggtataaatgaag-agaaggaggattagtagctgagggtaaatgaatgaataaactggttgtgtaataaggaaaatccaatgttacatgaactcct-----aaaaaaaaagaggtataagcaagagatgatactgtctcttGACAGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      758074 413 -    863181 tataaatatattttaaaaccattatgcaagaattcctaagggcctggaggagtaggttgtgcattcactgcatctggcaaagttggggataacactgggtgcagctgtattgcctggggtcagatagccgctcagttctccacctgcataaccctaacctctacaaactggaatggactgacaggagacacttgctagaacagtactgctcccttcagtctaggccagcacggtagcagaacctaatgttccttccaaaactagaaatgtttggtataaatgaag-agaaggaggattagtagctgagggtaaatgaatgaataaactggttgtgtaataaggaaaatccaatgttacatgaactcct-----aaaaaaaaagaggtataagcaagagatgatactgtctcttggcAGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29893396 416 -  71996105 tgtaaatatattttaaaaccattatgcaagaattcctaagggcctggaggagtaggttgtacattcactgcatctggcaaagttggggataacactgagtgcagctgtattgcccggggtcagatagccgctcagttctccacctgcgtaaccctaacctctacaaactagaatggactgacaggagacacttgctagaacagtattgctcccttcagtctaggccagcacagtagcagaacctaatgttccttccaaaactagaaatgtttggtataaatgaag-agaaggaggattagtagctgagggtaaatgaatgaataaactggttgtgtaataaggaaaatccaatgttacatgaactcct--aaaaaaaaaaaagaggtataagcaagagatgatactgtctcttGACAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      667266 413 -    735854 tgtaaatatattttaaaaccattatgcaagaattcctaagggcctggaggagtaggttgtgcattcactgcatctggcaaagttggggataacactgggtgcagctgtattgcctggggtcagatagccgctcagttctccacctgcataaccctaacctctacaaactggaatggactgacaggagacacttgctagaacagtattgctcccttcagtctaggccagcacagtagcagaacctaatgttccttctaaaactagaaatgtttgatataaatgaag-agaaggaggattagtagctgagggtaaatgaatgaataaactggttgtgtaataaggaaaatccaatgttacatgaactcct-----aaaaaaaaagaggtataagcaagagatgatactgtctcttGACAGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      551292 413 -   1829203 tgtaaatatattttaaaaccattatgcaagaattcctaagggcctggaggagtaggttgtacattcactgcatctggcaaagttggggataacactgagtgcagctgtattgcccggggtcagatagccgcccagttctccacctgcataaccctaacccctacaaactggaatggactgacaggagacacttgctagaacagtattgctcccttcagtctaggccagcacagtagcacaacctaatgttccttccaaaactagaaatgtttggtataaatgaag-agaaggaggattagtagctgagggtaaatgaatgaataaaccg-----gtaataaggaaaatccagtgttacatgaactcctaaaaaaaaaaaaaagaggtataagcaagagattatattgtctcttGACAGT
i colAng1.NW_012115577v1   I 329 C 0
e saiBol1.JH378128          25263205 6124 -  25516302 I
e otoGar3.GL873550          18203763   0 -  18854210 I
e aotNan1.NW_018496901v1      287363 35491 -    486031 I
e cebCap1.NW_016107755v1     1103983 31740 -   1771730 I
e calJac3.chr4              30685650 23561 + 171630274 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=4141765.000000
s hg38.chr6_GL000254v2_alt   1748984 1380 +   4827813 GATGGTGCACCCCGTCTCCATGGGGACAGAGGGTCGTGTGCTCAGAGTGCTTCCAGACGTCGCCTCCTG--CACTTCATCTGCCTGCTCATTTGTATCCTTTACAACt-------gctattgtttgaatgtttccccagaaaagcgtctgttggaaacttaatccccagtgcaacaatgttaagagatgggacctttgagaggtgattggaccatcagagctctgccttcattaatgaactgatcaaggctgccctcattaatgctgatcat-aaaggacctgagcctgtgagttcgacctcttactccctctagctctcaccctctcttgcacttctcccttctgccagatacattcccttgattttggaattcccatcctcgacaaccatgagccaattaaatttgtgttcattgtaagttatccagtctcaggtgttctgttatagtggcATAAT--------------------TTAAACcaggggtccctaactcccctgcagtggaccggtacaggtttgtggcctgttgggaaccagaccgcacagcaggaggtgaagggtgggcgagaaagcatgagcatgaccgcctgagctccgcctctggtcagatcagtggtggcattagattctcatgggagcacgaaccctattgtaaactgtgcatgcgagggatttaggctgcacgctcctttataagactccagtgcctgat-----catctgaggtggaacagtttcatcccgaaacccatccccgcctacccgtgccgcctgccctggtcagtggaaaaattttattccatgaaaccagtacttggtgcc-aaatatgttgaggTAAGCTATGATTACCGCTGATTTAAGCTATGACAATAATAAACTGCAATACTGAGtgtgaaagaaagataaaatcttgggaccccaaactcacagtgccaaagggaaaagttaagtttgggaactgagtcatggaaaaactgcctttcttttgttcctaaacaaatacctgcaaagatagaggaccacatatctccccaagtggcctccctcacaatctgctcacaatgtaattccttgtgggccccaacatctttaccctaaaacagagttttgttgacttttcccctgacaatgtaaagtaacagcttatcttcacaggtacaggacaaagacaagactagaaatcatcccttcacccacccggagacaaacacatattttactactctat------gtttactttagcttatgtaaaattcagatttactgagcacaagatgaatgcatagttgactg-tttttc---cccttctgcctgctctttcccctgtaagtactgaagtcctcaaaacccttttaggaaaaagcgtgggccacagatgct--agtgatttttgtctctttttccaaggtgCATCTt
s rheMac8.chr4              31110558 1386 + 172585720 GATGGTGCACCCCATCTCCATGGGGACAGAGGGTTCTGTGCTCAGGGTGCTTCCAGACGTCACCCCCTG--CACTTCATCTGGCTGCTCATTTGTATCCTTTAAAACt-------gctattgtttgaatgtttccccagaaaagcatctgttggaaacttaatcctcaatgcaacaatgttaagagatgggacctttgagaggtgattggaccatcagagctctgccttcattaatgaactgattgaggctgccctcattaaggctgatcat-aaaggacctgagcctgtgagttcgacctcttactccctttagcgctcaccatctcttgcacttctcccttctgccagatacagtcccttgatgctggaattcccatcctcgacaaccaagagccaattaaatttttgttcgttgtaagttatccagtctcaggtgttctgttatagtggcATAAT--------------------TTAAACcagggatctctaactcccctgcagtggaccggtacaagtttgtggcctgttaggatccagactacacagcaggaggtgaggggtgggggagagagcataagcatgacagcctgagctctgcctccagtcagatcagtggtggcattaggttctcatgggagcacgaaccctactgtaaactgtgcatgcgagggatctaggctgcatgctcctttataagattctaatgcctgaggtggaattctgaggtggaacagtttcattccaaaaccaatccctgcccacttgcgccacctgccctggtcagtgggaaaagtttgttccatgaatccagtccttggtgccaaaataggttgaggTAAGCTATGATTACTGCTGATTTAAGCTATGACAATAATAAACTGCAATACTGAGtgtgaaagaaaaataaaatcttgggaccacaaactcacaatgccaaagggaaaagttaagtttgggagctgagtcatggaaaaattgcctttcttttgttcctaaacaaatacctgcaaagatagaagaccacatatctccccaggtggcctccctcacaaactgctcacaaggtaattccttgtgggccccaacatctttaccctaaaacagagttttgttgaa-tttcccccaacaatgtaaattgacagcttatcttcacaggtacaggacaaacacaagactagaaaccatccctccacccacccggaaacaagtgcgtatttgactactgtat------atttactttagcttatgtaaaatgcagatttactgagcacaagatgaatgcatagttgaccgatttttc---ctcttctgcctgctctttcccctgtaagtattgaagtcctcaaaaccctctcaggaaaaagcatgggccacagatgct--agtggtttgtgtctttttttccaaggtgtgtctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              30402615 1386 - 170955103 GATGGTGCACCCCATCTCCATGGGGACAGAGGGTTCTGTGCTCAGGGTGCTTCCAGACGTCACCCCCTG--CACTTCATCTGGCTGCTCATTTGTATCCTTTAAAACt-------gctattgtttgaatgtttccccagaaaagcatctgttggaaacttaatcctcaatgcaacaatgttaagagatgggacctttgagaggtgattggaccatcagagctctgccttcattaatgaactgattaaggctgccctcattaaggctgatcat-aaaggacctgagcctgtgagttcgacctcttactccctttagcgctcaccatctcttgcacttctcccttctgccagatacagtcccttgatgctggaattcccatcctcgacaaccaagagccaattaaatttttgttcgttgtaagttatccagtctcaggtgttctgttatagtggcataaT--------------------TTAAACcagggatctctaactcccctgcagtggaccggtacaagtttgtggcctgttaggatccagactacacagcaggaggtgaggggtgggggagagagcataagcatgacagcctgagctctgcctccagtcagatcagtggtggcattaggttctcatgggagcacgaaccctactgtaaactgtgcatgcgagggatctaggctgcaccctcctttataagattctaatgcctgaggtggaattctgaggtggaacagtttcattccaaaaccaatccctgcccacttgcgccacctgccctggtcagtggaaaaagtttgttccatgaatccagtccttggtgccaaaataggttgaggTAAGCTATGATTACTGCTGATTTAAGCTATGACAATAATAAACTGCAATACTGAGtgtgaaagaaaaataaaatcttgggaccccaaactcacaatgccaaagggaaaagttaagtttgggagctgagtcatggaaaaattgcctttcttttgttcctaaacaaatacctgcaaagatagaagaccacatatctccccaggtggcctccctcacaaactgctcacaaggtaattccttgtgggccccaacatctttaccctaaaacagagttttgttgaa-tttcccccaacaatgtaaattgacagcttatcttcacaggtacaggacaaacacaagactagaaaccatccctccacccacccggagacaagtgcgtatttgactactgtat------atttactttagcttatgtaaaatgcagatttactgagcacaagatgaatgcatagttggccgatttttc---cccttctgcctgctctttcccctgtaagtattgaagtcctcaaaaccctctcaggaaaaagcatgggccacagatgct--agtggtttgtgtctttttttccaaggtgtgtctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      657226 1386 +   1495729 GATGGTGCACCCCATCTCCATGGGGACAGAGGGTTCTGTGCTCAGGGTGCTTCCAGACGTCACCCCCTG--CACTTCATCTGGCTGCTCATTTGTATCCTTTAAAACt-------gttattgtttgaatgtttccccagaaaagcatctgttggaaacttaatccccaatgcagcaatgttaagagatgggacctttgagaggtgattggaccatcagagctctgccttcattaatgaactgattaaggctgccctcattaaggctgatcat-aaaggacctgagcctgtgagttcaacctcttactccctttagcgctcaccatctcttgcacttctcccttctgccagatacagtcccttgatgctggaattcccatccttgacaaccatgagccaattaaatttttgttcgttgtaagttgtccagtctcaggtgttctgttatagtggcATAAT--------------------TTAAACcaggggtccctaactcccctgcagtggaccggtacaagtttgtggcctgttaggatccagactacacagcaggaggtgaggggtgggggagagagcataagcatgacagcctgagctctgcctccagtcagatcagtggtggcattaggttctcgtgggagcacgaaccctattgtaaactgtgcatgcgagggatctaggctgcacgctcctttataagattataatgcctgaggtggaattctgaggtggaacagtttcattccaaaaccaatacctgcccacatgcgccacctgccctggtcagtggaaaaagtttgttccatgaatccagtccttggtgccaaaataggttgaggTAAGCTATGATTACTGCTGATTTAAGCTATGACAATAATAAACTGCAATACTGAGtgtgaaagaaaaataaaatcttgggacctcaaactcacaatgccaaaaggaaaagttaagtttgggagctgagtcatggaaaaattgcctttcttttgttcctaaacaaatacctgcaaagatagaagaccccatatctccccaggtggcctccctcacaaattgctcacaaggtaattccttgtgggccccaacatctttaccctaaaactgagttttgttgaa-tttcccccaacaatgtaaattgacagcttatcttcacaggtacaggacaaacacaagactagaaaccatccctccacccacccggagacaagtgcgtatttgactactgtgt------atttactttagcttatgtaaaatgcagatttactgagcacaagatgaatgcatagttgaccgatttttc---cccttctgcctgctctttcccctgtaagtattgaagtcctcaaaaccctctcaggaaaaagcatgggccacagatgct--agtggtttgtgtctttttttccaaggtgtgtctt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      758487 1386 -    863181 GATGGTGCACCCCATCTCCATGGGGACAGAGGGTTCTGTGCTCAGGGTGCTTCCAGACGTCACCCCCTG--CACTTCATCTGGCTGCTCATTTGTATCCTTTAAAACt-------gctattgtttgaatgtttccccagaaaagcatctgttggaaacttaatccccaatgcaacaatgttaagagatgggacctttgagaggtgattggaccatcagagctctgccttcattaatgaactgattaaggctgccctcattaaggctgatcat-aaaggacctgagcctgtgagttcgacctcttactccctttagcgctcaccatctcttgcacttctcccttctgccagatacagtcccttgatgctggaattcccatcctcgacaaccaagagccaattaaatttttgttcgttgtaagttatccagtctcaggtgttctgttatagtggcATAAT--------------------TTAAACcagggatctctaactcccctgcagtggaccggtacaagtttgtggcctgttaggatccagactacacagcaggaggtgagggatgggggagagagcataagcatgacagcctgagctctgcctccagtcagatcagtggtggcattaggttctcatgggagcatgaaccctactgtaaactgtgcatgcgagggatctaggctgcacgctcctttataagattctaatgcctgaggtggaattctgaggtggaacagtttcattccaaaaccaatccctgcccacttgtgccacctgccctggtcagtgggaaaagtttgttctgtgaatccagtccttggtgccaaaataggttgaggTAAGTTATGATTACTGCTGATTTAAGCTATGACAATAATAAGCTGCAATACTGAGtgtgaaagaaaaataaaatcttgggaccccaaactcacaatgccaaaggggaaagttaagtttgggagctgagtcatggaaaaattgcctttcttttgttcctaaacaaatacctgcaaagatagaagaccacatatctccccaggtggcctccctcacaaactgctcacaaggtaattccttgtgggccccaacatctttaccctaaaactgagttttgttgaa-tttcccccaacaatgtaaattgacagcttatcttcacaggtacaggacaaacacaagactagaaaccatccctccacccacccggagacaagtgcgtatttgactactgtgt------atttactttagcttatgtaaaatgcagatttactgagcacaagatgaatgcagagttgacggatttttc---ctcttctgcctgctctttcccctgtaagtattgaagtcctcaaaaccctctcaggaaaaagcatgggccacagatgct--agtggtttgtgtctttttttccaaggtgtgtctt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17             29893812 1382 -  71996105 GATGGTGCACCCCATCTCCATGGGGACAGAGGGTTCTGTGCTCAGGGTGCTTCCAGACGTCACCCCCTG--CACTTCATCTGGCTGCTCATTTGTATCCTTTAAAACt-------gctattgtttgaatgtttccccagaaaagcatctgttggaaacttaatccccaatgcaacaatgttaagagatgggacctttgagaggtgattggaccatcagagctctgccttcattaatgaactgactaaggctgccctcattaaggctgatcat-aaaggacctgagcctgtgagttcgacctcttactccctttagcgctcaccatctcttgcacttctcccttctgccagatacagtcccttgatgctggaattcccatcctcgacaaccatgagccaattaaatttttgttcgttgtaagttatccagtctcaggtgttctgttatagtggcataaT--------------------TTAAACcaggggtccctaactcccctgcagtggaccggtaccagtttgtggcctgttaggatccagactacacagcaggaggtgaggggtgggggagagagcataagcatgacagcctgagctctgcctccagtcagatcagtggtggcattaggttctcatgggagcacgaaccctgttgtaaactgtgcatgcgagggatctaggctgcacgctcctttataagattctaatgcctgaggtggagttctgaggtggaacagtttcattccaaaaccaatccctgcccacttgcgccacctgccctggtcagtggaaaaagtttgttccatgaatccagtccttggtgccaaaataggttgaggTAAGCTATGATTACTGCTGATTTAAGCTATGACAATAATAAACTGCAATACTGAGtgtgaaagaaaagtaaaatcttgggaccccaaactcacaatgccaaagggaaaagttaagtttgggagctgagtcatggaaaaattgc----cttttgttcctaaacaaatacctgcaaagatagaagaccacatatctccccaggtggcctccctcacaaattgctcacaaggtaattccttgtgggccccaacatctttaccctaaaagagagttttgttgaa-tttcccccaacaatgtaaattgacagcttatcttcacaggtacaggacaaacacaagactagaaaccatccctctacccacccagagacaagtgcgtatttgactactgtgt------atttactttagcttatgtaaaatgcagatttactgagcacaagatgaatgcatagttgacagatttttc---cccttctgcctgctctttcccctgtaagtattgaagtcctcaaaaccctctcaggaaaaagcatgggccacagatggt--agtggtttgtgtctttttttccaaggtgtgtctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      667679 1386 -    735854 GATGGTGCACCCCATCTCCATGGGGACAGAGGGTTCTGTGCTCAGGGTGCTTCCAGATGTCACCCCCTG--CACTTCATCTGGCTGCTCATTTGTATCCTTTAAAACt-------gctattgtttgaatgtttccccagaaaagcatctgttggaaacttaatccccaatgcaacaatgttaagagatgggacctttgagaggtgattggaccatcagagctctgccttcattaatgaactgattaaggctgccctcattaagactgatcat-aaaggacctgagcctgtgagttcgacctcttactccttttagcgctcaccatctcttgcacttctcccttctgccagatacagtcccttgatgctggaattcccatcctcgacaaccatgagccaattaaatttttgttcgttgtaagttgtccagtctcaggtgttctgttatagtggcATAAT--------------------TTAAACcaggggtccctaactcccctgcagtggaccggtacaagtttgtggcctgttaggatccagactacacagcaggaggtgaggggtgggggagagagcataagcatgacagcctgagctctgcctccagtcagatcagtggtggcattaggttctcatgggagcacgaaccctactgtaaactgtgcatgcgagggatctaggctgcacgctcctttataagattctaatacctgaggtggaattctgaggtggaacagtttcattccaaaaccaatccctgcccacatgcgccacctgccctggtcagtggaaaaagtttgttccgtgaatccagtccttggtgccaaaacaggttgaggTAAGCTATGATTACTGCTGATTTAAGCTATGACAATAATAAACTGCAATACTGAGtgtgaaagaaaaataaaatcttgggaccccaaactcacaatgccaaagggaaaagttaagtttgggagctgagtcgtggaaaaattgcctttcttttgttcctaaacaaatacctgcaaagatagaagaccacatatctccccaggtggcctccctcacaaattgctcacaaggtaattccttgtgggccccaacatctttaccctaaaacagagttttgttgaa-tttcccccaacaatgtaaattgacagcttatcttcacaggtacaggacaaacacaagactagaaaccatccctccacccacccggagacaagtgcgtatttgactactgtgt------atttactttagcttatgtaaaatgcagatttactgagcacaagatgaatgcacagttgaccgatttttc---ctcttctgcctgctctttcccctgtaagtattgaagtcctcaaaaccctctcaggaaaaagcatgggccacagatgct--agtggtttgtgtctttttttccaaggtgtgtctt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      551705 1412 -   1829203 GATGGTGCACCCCATCTCCATGGGGACAGAGGGTTCTGTGCTCAGGGTGCTTCCAGACGTCATCCCCTG--TACTTCATCTGGCTGCTCATTTGTATCCTTTAAATCCTTTAAAAgctattgtttgaatgttcccccagaaaagcatctgttggaaacttaatccccaatgcaacaatgttaagagatgggacctttgagaggtgattggatcatcagagctctgccttcatcaatgaactgattaaggctgccctcattaaggctgatcat-aaagcacctgagcctgtgagttcgacctcttactccctttagcgctcaccatctcttgcgcttctcccttctgccagatacagtcccttgatgttggaattcccatcctcgacaaccatgagccaattaaatttttgtttgttgtaagttatccagtctcaggtgttctgttatagtggcATAATTTAAACCAGGGGTCCCTAACTTAAACcaggggtccctaactcccctgcagtggaccggtacaagtttgtggcctgttaggatccagactacacagcaggaggtgaggggtgggggagagagcataagcatgacagcctgagctctgcctccagtcagatcagtggtggcattaggttctcatgggggcacgaaccctattgtaaactgtgc-tgcgagggatctaggctgcacgctcctttataagattctaatgcctgaggtggaattctgaggtgaaacagtttcatcccaaaaccaatccccgcccacttgcgccacctgccctggtcagtggaaaaagtttgttccatgaatccagtccttggtgccaaaataggttgaggTAAGCTATGATTACTGCTGATTTAAGCTATGACAATAATAAACTGCAATACTGAGtgtgaaagaaaaataaaatcttgggaccccaaactcacaatgccaaagggaaaagttaagtttgggagctgagtcatggaaaaattgcctttcttttgttcctaaacaaatacctgcaaagatagaagaccacatatctccccaggtggcctccctcacaaattgctcacaaggtaattccttgtgggccccaacatctttaccctaaaacagagttttgttgaa-tttccccccacaatgtaaattgacagcttatcttcacaggtacaggacaaacacaagactagaaactatccctccacccacccggagacaagtgcatatttgactactgtgt------atttactttagcttatgtaaaatgcagatttactgagcacaagatgaatgcatagttgactgatttttc---cccttctgcctgctctttcccctgtaagtattgaagtcctcaaaaccctctcaggaaaaagcatgggccacagatgct--agcggtttgtgtctctttttccaaggtgtgtctt
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378128          25269329 1360 -  25516302 gatggtgcaccccatctccatgtgaacagaggctcatgtgctcagagtccttccagacctcaccctgtgcacacttcatctggctgctcttttgtatcctttataaCt-------gctatggtttgaatgtttgtccaaaaatgcatgtgttggatgattcatcaccaatgcaacatctttaagaggagggacctttgagaggtgattagatcatcagagctctggcctcgttaatgg-------------------attaagtctgatcatgaaaggatctgaggctgttagtttgacctcttttttcctctacctctcaccctctcctgcccttttgcttcgtaccagatgccatctcttaatcttggaattcccatcctcaataaccatgaatcaaataaatttctgtttgttataagttatccagtctcaggtgttctgctatagtcacataaT--------------------TTAAGCcaggggtccctaaaccccgggctgtggactggaacaggttcctggcctggtaggaaccagatcgcacagcaggaggtgattcgtgggcaagagagcaggagcatgaccacaggagctctgcctgctgtcagatcagtggcggaatttgattctcataaaagcaggaaccctgttgtgaactctgcatgcaagggctgtaggttgcatgctcc-ttatgaaacactaatgcctgat-----catccgaagtggaacagtttcatcctgaaaccattcccctccagcccctgccacctctgctggtccatggaaaaattgtcttccatgaaactggtccctggtgccaaaa-aggtgggg-------------acagctgATTTAAGCTATAGCAATAATAAACTGCAATACTGAGtgtggaacgaagataaaatttcagaactccaaactcactataccaaaggaaaaggttaagtttggaaactgagggatggaaaatttgcctctcttttgttcctaaacaactaaccacaaagatagaagaccacatatctccccaggtggtctctctcacaaattgctcccaggataattccttgtgggcttcaacatctttactctaaaacagagttttgttgac-tttcccccgacaatgtaaattaacagctgatcttcacaggtacaggaaaaacacaagactagaaatcatccctccacccacccagggacaaacgcatatttgacttctctaccacacagtttactttatctcatgtaaaatgcagatttactgagcacgagatgaaagcatagttgactgttccttcttactctcctgcctgct-tttcccctgtaaatattgcagtcctcaaaaccctcctaggaaaaagcatgggccacagatgctacaatcatttgtgtctctttttccaaggtgtatctt
i saiBol1.JH378128         I 6124 N 0
e otoGar3.GL873550          18203763    0 -  18854210 I
e aotNan1.NW_018496901v1      287363 35491 -    486031 I
e cebCap1.NW_016107755v1     1103983 31740 -   1771730 I
e calJac3.chr4              30685650 23561 + 171630274 I
e nomLeu3.chr1a             47781820    5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=3353235.000000
s hg38.chr6_GL000254v2_alt   1750364 1361 +   4827813 ggaatgggagactggagggacccatggatcccaaccctggacctggttcccccagtacaagccatgagccagttgaatctgaatgcgaagatggaacgacgactgaccagagtcatgctgacatcaacccccataacatggggactgatcaagaaaaccacacaggaagctgagaaactgctggagtgccagggtgt-caccttttgctggaactcagaagtacaatcgatgtttaacggaccagtgctttctgactcagctcctctctaccctgaatacaagagaccctaatagttaggcaggaatatcatcgcccttattctgcatgaagaagttgcagaagacagaccttcatccttctgcaacccttaggattaagcgtcctcttgtaaaaagggaagggggagatatgtaagaaacattcaaaccacagcaactctattttgaataagggctaagaaaaatgaagctggatcaccaaccggcaattaagagctgcacagcctgcaattaccttgctcaattaaTTTTAAAACAAAAAGGAGTAGATGTTGGAGGCCgcacgaatgtttcttatgatttgccacaattgaagcctgccagtaacaatatgaacctgtgatcaattaagcagctgaccaatcattacctcctcctccttgcccttattacccagtaaatatgaagggctaagaagctc-gggcggcggcctttgctcactagaagcagggagctcttttcttctcgtctctcttcttcttCCCCATGCTAGTCTTTCCTTAaaatgatgtagggtatctggcagataaaatttctaagcagcaaagcattcaaagagtgacttgggtgctcctaaaagcattccattttcaaagggaaacagagcataaaagttcagaaaatttacagcctgacaatgcagtagaaaagaaaaacccattttttgaggagaaactcaagctggctgcagaaatttgcataagtaacaacaagccaagtgttgatccccaagacaagggggaaaatgtctccagggcatgccataggtcttcatggcagcccctctcatcacagacccagaagcataggaggaaaaaatggtttcatgggcagggcccagggtccccatgctatgtacagcctagggacttggtgccctgcatcccagatgctcccactgttgctaaaaggggccaaggtacagcttggtccatggctccagagggtgcaagctttaagccttgacagcttccatgtggttttgagcctgcaggtgcacagaagtcaagaatggaggtttggga-acctccacctagatttcagaagatgtatggaa--atgctaggatgcccaggcaaaagtt
s rheMac8.chr4              31111944 1352 + 172585720 gaaacgggagactggagggacccatggatcccagccctggacctggttcccccagtactagccatgagccagttgaatctgaatgcaaagatagaatgaggactgaccggagtcacactgacatcaacccccataacatggggacagatcaagaaaaccacacaggaagctgagaaactgctggggcgccagggttt-caccttttgctggaactcagaagtaccatcgatgcttaatggactgatgctttctgactgagctcctctctaccctgaatacaagagaccctaac----aggcaggaatctcatcgcccttattcagtatgaagaagttgcaaaaaacagaccttcatccttctgcaacccttaggattaaggggcctcttgt-aaaagggaagggggaaatatgtaagaagcattcaaaccccagcgaccccattttgaataagggctaagaaaaatgaagctggatcaccaaccggcaattaaaagctgcacagcctgcagttgcgttgctcaattaaTTTAAAAACAAAAAGGAGGAGATGTTGGAGGCCAcacgaatgtttcgtatgattaggcacaactgaagcctgccagtaacgatatgaacctgtgatcaattaagcagctgaccaatcattgcatcctcctccttgcccttgttacccaataaatatgaagggctgagaagctc-gggcggcagtcttcgctcactagaagcagggagctcttttcttctcttctc---tcttcttCCCCATGCTAGCTTTTCCTTAaaatgacttagggtatctggcagataaaatttctaagcagcaaagcatccaaagagtgacttgggtgctcttaaaagcattccattttaaaagggaaacagagcataaaagttcagaaaatttacagccctgcaatgcagtagaaaagaaaaacccattttttgaggagaaactcaagctagctgcagaaatttgcataagtaacaatgagccaagtgttgatccccaagacaatggggaaaatatctccagggcaagccataagtcttcatggcagcccctcccatcacagatccagaagcataggaggaaaaaatggttttgtgggtcccgcccagggtcctcatgctgtgttcagcttagggacttggtgccctgcgtcccagatgctcccactgctgctaaaaggggccaaagtacagcttggcccatggctccagaggatgcacgctttaaaccttggcagtttccacatggttttgagcctgcaagtgcacagaagtcaagaatggaagtttgggg-acctccacctagatttcagaagatgtatggaa--atgctaggatgtccaggc-aaagtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              30404001 1356 - 170955103 gaaacgggagactggagggacccatggatcccagccctggacctggttcccccagtactagccatgagccagttgaatctgaatgcaaagatagaatgaggactgactggagtcacactgacatcaacccccataacatggggacagatcaagaaaaccacacaggaagctgagaaactgctggggcgccagggttt-caccttttgctggaactcagaagtaccatcgatgcttaatggactgatgctttctgactgagctcctctctaccctgaatacaagagaccctaacagttaggcaggaatctcatcgcccttattcagtatgaagaagttgcagaaaacagaccttcatccttctgcaacccttaggattaaggggcctcttgt-aaaagggaagggggaaatatgtaagaagcattcaaaccccagcgaccccattttgaataagggctaagaaaaatgaagctggatcaccaaccggcaattaaaagctgcacagcctgcagttgcgttgctcaattaatttaaaaacaaaaaggaggaGATGTTGGAGGCCAcacgaatgtttcgtatgattaggcacaactgaagcctgccagtaacgatatgaacctgtgatcaattaagcagctgaccaatcattgcatcctcctccttgcccttgttacccaataaatatgaagggctgagaagctc-gggcggcagtcttcgctcactagaagcagggagctcttttcttctcttctc---tcttcttCCTCATGCTAGCTTTTCCTTAaaatgacttagggtatctggcagataaaatttctaagcagcaaagcatccaaagagtgacttgggtgctcttaaaagcattccattttaaaagggaaacagagcataaaagttcagaaaatttacagccctgcaatgcagtagaaaagaaaaacccattttttgaggagaaactcaagctagctgcagaaatttgcataagtaacaatgagccaagtgttgatccccaagacaatggggaaaatatctccagggcaagccataagtcttcatggcagcccctcccatcacagatccagaagcataggaggaaaaaatggttttgtgggtcccgcccagggtcctcatgctgtgttcagcttagggacttggtgccctgcgtcccagatgctcccactgctgctaaaagggaccaaagtacagcttggcccatggctccagaggatgcaagctttaaaccttggcagtttccacatggttttgagcctgcaagtgcacagaagtcaagaatggaagtttgggg-acctccacctagatttcagaagatgtatggaa--atgctaggatgtccaggc-aaagtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      658612 1358 +   1495729 gaaacgggagactggagggacccatggatcccagccctggacctggttcccccagtatgagccatgagccagttgaatctgaatgcgaagatggaatgaggactgaccggagtcacactgacatcaacccccataacatggggacagatcaagaaaaccacacaggaagctgagaaactgctggggcgccagggttt-caccttttgctggaactcagaagtaccatcgatgcttaatggactgatgctttctgactgagctcctctctaccctgaatacaagagaccctaatagttaggcaggaatatcatcgcccttattcagtatgaagaagttgcagaaaacagaccttcatccttctgcaacccttaggattaaggggcctcttgt-aaaagggaagggggaaatatgtaagaagcattcaaaccccagcgactccattttgaataagggctaagaaaaatgaagctggatcaccaaccggcaattaaaagctgcacagcctgcaattgcgttgctcaattaaTTTAAAAACAAAAAGGAGGAGATGTTGGAGGCCAcacgaatgtttcgtatgattaggcacaactgaagcctgccagtaacaatatgaacctgtgatcaattaagcagctgaccaatcattgcatcctcctccttgccctttttacccaataaatatgaagggctgagaagctcggggcggcagtctttgctcactagaaacagggagctcttttcttctcttctc---tcttcttCCCCATGCTAGCTTTTCCTTAaaatgacttagggtatctggcagataaaatttctaagcagcaaagcattcaaagagtgacttgggtgctcttaaaagcattccattttaaaagggaaacagagcataaaagttcagaaaatttacagccctgcaatgcagtagaaaagaaaaacccattttttgaggagaaactcaagctagctgcagaaatttgcataagtaacaatgagccaagtgttgatccccaagacaatggggaaaatatctccaaggcaagccataagtcttcatggcagcccctcccatcacagatccagaagcataggaggaaaaaatggttttgtgggtcccgcccagggtcctcatgctgtgttcagcttagggacttggtgccctgcgtcccagatgctcccactgctgctaaaaggggccaaagtacaggttggcccgtggctccagaggatgcaagctttaaaccttggcagtttccacatggttttgagcctgcaagtgcacagaagtcaagaatggaagtttggggaacctccacctagatttcagaagatgtatggaa--atgctaggatgtccaggc-aaagtt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1      759873 1357 -    863181 gaaacgggagactggaggcacccatggatcccagccctggacctggttcccccagtacgagccatgagccagttgaatctgaatgcgaagatggaatgaggactgaccggagtcacactgacatcaacccccataacatggggacagatcaagaaaaccacacaggaagctgagaaactgctggggggccagggttt-cgccttttgctggaactcagaagtaccatcgatgcttaatggactgatgctttctgactgagctcctctctaccctgaatacaggagatcctaatagttaggcaggagtatcatcgcccttattcagtatgaagaagttgcagaaaacagaccttcatccttctgcaacccttaggattaaggggcctcttgt-aaaagggaagggggaaatatgtaataagcattcaaaccccagcgactccattttgaataagggctaagaaaaatgaagctggatcaccaaccggcaattaaaagctgcacagcctgcaattgcgttgctcaattaaTTTAAAAACAAAAAGGAGGAGATGTTGGAGGCCAcacgaatgtttcgtatgattaggcacaactgaagcctgccagtaacgatatgaacctgtgatcaattaagcagctgaccaatcattgcatcctcctccttgctcttgttacccaataaatatgaagggctgagaagctc-gggcggcagtcttcgctcactagaagcagggagctcttttcttctcttctc---tcttcttCCCCATGCTAGCTTTTCCTTAaaatgacttagggtatctggcagataaaatttctaagcagcaaagcattcaaagagtgacttgggtgctcttaaaagcattccattttaaaagggaaacagagcataaaagttcagaaaatttacagccctgcaatgcagtagaaaagaaaaactcattttttgaggagaaactcaagctagctgcagaaatttgcataagtaacaatgagccaagtgttgatccccaagataatggggaaaatatctccagggcatgccataggtcttcatggcagcccctcccatcacagatccagaagcataggaggaaaaaatggttttgtgggtcccgcccagggtcctcatgctgtgttcagcttagggacttggtgccctgcgtcccagatgctcccactgctgctaaaaggggccaaggtacagcttggcccatggctccagaggatgcaagctttaaaccttggcagtttccacatggttttgagcctgcaagtgcacagaagtcaagaatggaagtttggg--aactccacgcagatttc-gaagatgttgggaagtatgttaggatgcccaggcgaaagtt
i cerAty1.NW_012002535v1   C 0 I 13788
s chlSab2.chr17             29895194 1357 -  71996105 gaaacgggagactggaggcacccatggatcccagccctggacccggttcccccagtacgagccatgagccagttgaatctgaatgcgaagaaggaatgaggactgaccggagtcacactgacatcaacccccataacatggggacagatcaagaaaaccacacaggaagctgagaaactgctggggcgccagggtttacaccttttgctggaactcagaagtaccatcgatgcttaatgaactgacgctttctgactgagctcctctctactctgaatacaagagaccctaatagttaggcaggattatcattgcccttattcagtatgaagaagttgcagaaaacagaccatcatccttctgcaccccttaggattaaggggcctcttgt-aaaagggaagggggaaatatgtaagaagcattcaaaccccagcgactccattttgaataagggctaagaaaaatgaagctggatcaccaaccggcaattaaaagctgcacagcctgcaattgcgttgctcaattaatttaaaaacaaaaaggaggaGATGTTGGAGGCCAcacgaatgtttcgtatgattaggcacaactgaagcctgccagtaacaatatgaacctgtgatcgtttaagcagctgaccaatcattgcatcctcctccttgctcttgttacccaataaatatgaagggctgagaaactc-gggcagcagtcttcgctcactagaaacagggagctcttttcttctcttctc---tcttcttCCCCATGCTAGTTTTTCCTTAaaatgacttagggtatctggcagataaaatttctaagcagcaaagcattcaaagagtgacttgggtgctcttaaaagcattccattttaaaagggaaacagagcataaaagttcagaaaatttacagccctgcaatgcactagaaaagaaaaacccattttttgaggagaaactcaagctagctgcagaaatttgcataagtaacaatgagccaagtgttgatccccaagacaatggggaaaatatctccagggcatgccataaatcttcatggcagcccctcccatcacagacccagaagcataggaggaaaaaatggttttgtgggtcccgcccagggtcctcatgctgtgttcagcttagggacttggtgtcctgcatcccagatgctcccactgctgctaaaaggggccaaggtacagcttggcccatggctccagaggatgcaagctttaaaccttggcagtttccacatggttttgagcctgcaagtgcacagaagtcaagaatggaagtttggga-acctctacctagatttcagaagatgtatggaa--atgctaggatgcccaggc-aaagtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1      669065 1353 -    735854 gaaacgggagactggagggacccatggatcccagccctggacctggttcccccagtacgagccatgagccagttgaatctgaatgtgaagatggaatgaggactgaccggagtcacattgacatcaacccccataacatggggacagatcaagaaaaccacacaggaagctgagaaactgctggggcgccagggttt-caccttttgctggaactcagaagtaccatcgatgcttaatggactgatgctttctgactgagctcctctctaccctgaatacaagagaccctaatagttaggcaggaatatcatcgcccttattcagtatgaagaaattgcagaaaacagaccttcatccttctgcaacccttaggattaaggggcctcttgt-aaaagggaagggggaaatatgtaagaagcattcaaaccccagcgactccattttgaataagggctaagaaaaatgaagctggatcaccaaccagcaattaaaagctgcacagcctgcaattgcgttgctcaattaaTTTAAAAACAAAAAAGAGGAGATGTTGGA-GCCAcacgaatgtttcgtatgattaggcacaactgaagcctgccagtaaggatatgaacctgtgatcaattaagcagctgaccaatcattgcatcctcctccttgctcttgttacccaataaatatgaagggctgagaagctc-gggcggcagtcttcgctcactagaaacagggagctcttttcttctcttctc---tcttcttCCCCATGCTAGCTTTTCCTTAaaatgacttagggtatctggcagataaaatttctaagcagcaaagcattcaaagagtgacttgggtgctcttaaaagcattccattttaaaagggaaac--agcataaaagttcagaaaatttacagtcctgcaatgcagtagaaaagaaaaacccattttttgaggagaaactcaaactagctgcagaaatttgcataagtaacaatgagccaagtgttgatccccaagacaatggggaaaatatctccagggcatgccataagtcttcatggcagcccctcccatcacagatccagaagcataggaggaaaaaatggttttgtgggtcccgcccagggtcctcatgctgtgttcagcttagggacttggtgccctgcgtcccagatgctcccactgctgctaaaaggggccaaggtacagcttggcccatggctccagaggatgcaagctttaaaccttggcagtttccacatgattttgagcctgcaagtgcacagaagtcaagaatggaagtttgggg-acctccacctagatttcagaagatgtatggaa--atgctaggatgtccaggc-aaagtt
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1      553117 1355 -   1829203 gaaacgggagactggagggacccatggatcccaactctggacctggttcccccggtacgagccatgagccagttgaatctgaatgcgaagatggaatgaggactgacaggagtcacactgacatcaacccccataacatggggacagatcaagaaaaccacacaggaagctgagaaactgctggggcgccagggttt-caccttttgctggaactcagaagtaccatcgatgcttaatggactgatgctttctgactgagctcctctctaccctgaatacaagagaccctaatagttaggcaggaatatcatcgcccttattcagcatgaagaagttgcagaagacagaccttcatccgtctgcaacccttaggattaaggggcctcttgt-aaaagggaaggggaaaatatgtaagaagcattcaaaccccagcgactccattttgaataagggctaagaaaaatgaagctggatcaccaaccggcaattaaaagctgcacagcctgcaattgccttgctcaattaaTTTAAAAACAAAAAGGAGGAGATATTGGAGGCCAcacgactgtttcttatgattaggcacaattgaagcctgccagtaacaatttgaacctgtgatcaattaagcagctgaccaatcattgcatcctcctcattgctcttgttacccaataaatatgaagggctgagaagctc-aggcagcagtcttcgctcactagaagcagggagctcttttcttctcttctc---tcttcttCCCCATGCTAGCTTTTCCTTAaaatgacttagggtatctggcagataaaatttctaagcagcaaagcatccaaagagtgacttgggtgctcttaaaagcattccattttaaaagggaaacagagcataaaagttcagaaaatttacagcccggcaatgcagtagaaaagaaaaacctattttttgaggagaaactcaagctggctgcagaaatttggataagtaacaacaagccaagtgttgatccccaagacaatgggg-aaatgtctccagggcgtgccataggtcttcatggcagcccctcccatcacagacccagaagcataggaggaaaaaatggttttgtgggtctggcccagggtcctcatgctgtatgcagcttagggacttggtgccctgcgtcccagatgctcccactgttgctaaaaggggccaaggtacagcttggcccatggctccagaggatgtaagctttaaaccttggcagtttccacatggttttgagcctgcaagtgcacagaagtcaagaatggaagtttggga-acctccacctagatttcagaagatgtatggaa--atgctaggatgcccaggc-aaagtt
i colAng1.NW_012115577v1   C 0 C 0
e otoGar3.GL873550          18203763    0 -  18854210 I
e aotNan1.NW_018496901v1      287363 35491 -    486031 I
e cebCap1.NW_016107755v1     1103983 31740 -   1771730 I
e calJac3.chr4              30685650 23561 + 171630274 I
e nomLeu3.chr1a             47781820    5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=2493411.000000
s hg38.chr6_GL000254v2_alt   1751725 1342 +   4827813 tgctgcaggggcagggccctcatggagaacctctgctagggcaatgtggaagggaaacgt-ggggctggagcccccacacagagtccctactggggcactgcctagtggagctgtaagaagagggccaccgtgttccagatcccaaaatggtagatccaccaacagcttgcactgtgcatctggaaaagtcacagacactcagcgccagactgtgaaagcagccaggagggaacatataccctgcaaagtcacagaggcagagctgcccaagatatggggacctacctcttgcatcagcatgacctggatgtgagacatggagtcaaaggagatcatcttggggctttagaatttgactgccccactggatttaggacttgcatgggccctgtaactcctttgttttggccaatttctcccatctggaatggctgtatttacccaatacctgtacccccattgtatctcgtaagtaactagcttggttttgattttacaggttaataggtgggagggacttgccttgtctcagatgagactttggactgtggatttctgggttaatgctgaaatgaggaaagactttgggggattgttgggaaggcatgattggtttt-gaaatgtgaggacatgagatttggaggggccaggggtggaatgacatggtttggctctgtgtccccacccaaatctcatcttgaattatactcccataattcttacatgttgtaggagggacccagtgggagataatatgaatcatggaggcagtttcccccatactgttcttgtggtattgaataaggctcacaagacctgacgattttatcaggggtttccgcttttgtatcttactcattttctcttgccactgctacgtaaaaaaaaa--ttcacctcctgccatgattctgagacc-atcgagccatgtggaattgtaagtccaattaaacttctttttcttcccagtcttgagtatgtgtttatcagcagtgtgaaaacggactaatatagctggcttcgtagactgaattgaaaaaaactgcctactttaatttctaaaaggtatgtgtaaaattgatgtaatttctaaattatatgtttgatacaattcatcagtgaagccttctggacctagactttcctatattagaaggattttgattacaaattcaatttctacaatcaatatatggctgaccacattttctatctcttctcaggtcagttttcataagttttccctctcaaggaaattgttcatttcatttgcttgtcaaacttattgacatgagattatcaatatttctttttgagatctagagtgtgtactgatgttctctct
s rheMac8.chr4              31113296 1338 + 172585720 tgctgcaggggtagggccctcatggagaacctctgctagggcagtgtggaagggaaatgt-ggggctggagcccccacacagagtccctaccagggcactgcctagtggagctgcgagaagacggctaccgtgttccagaccccaaaatggtagatccaccaacagcttgcactgtgcatctggaaaagacacagacactcag-gccacactgtgaaagcagccgggagggagcatgtaccctgcaaagccacaggggcagagctgcccaggatacggggacctacctcttgcatcagcatgacctggatgtgagacatggagtcaaaggagatcatcttggagctttagaatttgactgccccactggatttaggacttgcatgggccctgtaactccttcgttttggccaatttctcccatttggaatggctgtatttacccaatacctgtacctgcattgtatctaagaagtgactagcctgagtctgattttacacgctaataggtggaagggacttggcttgtctcagatgagattttggactgtggacttttgggttaatactgagatgaggaaagactttgggggattgttgggaaggcatga-tggttttggaaatgtgaggatatgagatttggaggggacaggggcggaatgatatggtttggctctgtgtccccacccaaatctcatcttgaattgtactcccataattcttacatgttgtaggagggacccagtgggagataatttgaatcatgggggcagtttcccccacacgattcttgtggtattgaatcaggctcacaagatctgatgattttatcaggggtttctgcttttgtatcttactcattttctcttgccactgccatgtaaaaagtgcctttcaccttctgccatgattctgaggcctccccagccatgtggaattttaagtccaattaaacttctttttcttcctagtcttgagtatgtctttatcagcagcgtgaaattggactaatacagctggcttcatagattgaattgagaaaagcggcctcctttaatttctaaaaggtatgtgtaaaattgatgttatttctgaattatatgtttgatacaattcatcagtaaagcct------cctggagtttcctatatgagaaggattttgattacaaattcaatttctacaatcaatatatggctgaccacattatctatctcttctcaggtcagttttcataagttttccctctaaaggaaattgttcatttcatttgcttgtcaaacttattgacatgagattatcaatatttctttttGAGATCTAGAGTGTGTACTGATGTTCTCTCT
i rheMac8.chr4             C 0 I 12132
s macFas5.chr4              30405357 1338 - 170955103 tgctgcaggggtagggccctcatggagaacctctgctagggcagtgtggaagggaaatgt-ggggctggagcccccacacagagtccctactagggcactgcctagtggagctgcgagaagacggctaccgtgttccagaccccaaaatggtagatccaccaacagcttgcactgtgcatctggaaaagacacagacactcag-gccacactgtgaaagcagccaggagggagcatataccctgcaaagccacaggggcagagctgcccaagatacggggacctaccttttgcatcagcatgacctggatgtgagacacagagtcaaaagagatcatcttggagctttagaatttgactgccccactggatttaggacttgcatgggccctgtaactccttcgttttgaccaatttctcccatttggaatggctgtatttacccaatacctgtacctgcattgtatctaagaagtaactagcctgagtttgattttacacgctaataggtgcaagggacttggcttgtctcagatgagattttggactgtggacttttgggttaatactgagatgaggaaagactttgggggattgttgggaaggcatga-tggttttggaaatgtgaggatatgagatttggaggggacaggggcagaatgatatggtttggctctgtgtccccacccaaatctcatcttgaattgtactcccataattcttacatgttgtaggagggacccagtgggagataatttgaatcatgggggcagtttccccgacacgattcttgtggtattgaatcaggctcacaagatctgatgattttatcaggggtttctgcttttgtatcttactcattttctcttgccactgccatgtaaaaagtgcctttcaccttctgccatgattctgaggcctccccagccatgtggaattttaagtccaattaaacttctttttcttcctagtcttgagtatgtctttatcagcagcgtgaaattggactaatacagctggcttcatagattgaattgagaaaagctgcctcctttaatttctaaaaggtatgtgtaaaattgatgttatttctgaattatatgtttgatacaattcatcagtaaagcct------cctggagtttcctatatgagaaggattttgattacaaattcaatttctacaatcaatatatggctgaccacattatctatctcttctcaggtcagttttcataagttttccctctaaaggaaattgttcatttcatttgcttgtcaaacttattgacatgagattatcaatatttctttttgagatctagagtgtgtactgatgttctctct
i macFas5.chr4             C 0 I 12127
s macNem1.NW_012012100v1      659970 1338 +   1495729 tgctgcaggggtagggccctcatggagaacctctgctagggcagcgtggaagggaaatgt-ggggctggagcccccacacagagtccctaccagggcactgcctagtagagctgcaagaagacggctaccgtgttccagaccccaaaatggtagatccaccaacagcttgcactgtgcatctggaaaagacacagacactcag-gccacactgtgaaagcagccgggagggagcatgtaccctgcaaagccacaggggcagagctgcccaggatacggggacctacctcttgcatcagcatgacctggatgtgagacatggagtcaaaggagatcatcttggagctttagaatttgactgccccactggatttaggacttgcatgggccctgtaactccttcgttttggccaatttctcccatttggaatggctgtatttacccaatacctgtacctgcattgtatctaagaagtgactagcctgagtctgattttacacgctaataggtggaagggacttggcttgtctcagatgagattttggactgtggacttttgggttaatactgagatgaggaaagactttgggggattgttgggaaggcatga-tggttttggaaatgtgaggatatgagatttggaggggacaggggcggaatgatatggtttggctctgtgtccccacccaaatctcatcttgaattgtactcccataattcttacatgttgtaggagggacccagtgggagataatttgaatcatgggggcagtttcccccacacgattcttgtggtattgaatcaggctcacaagatctgatgattttatcaggggtttctgcttttgtatcttactcattttctcttgccactgccatgtaaaaagtgcctttcaccttctgccatgattctgaggcctccccagccatgtggaattttaagtccaattaaacttctttttcttcctagtcttgagtatgtctttatcagcagcgtgaaattggactaatacagctggcttcatagattgaattgagaaaagcggcctcctttaatttctaaaaggtatgtgtaaaattgatgttatttctgaattatatgtttgatacaattcatcagtaaagcct------cctggagtttcctatatgagaaggattttgattacaaattcaatttctacaatcaatatatggctgaccacattatctatctcttctcaggtcagttttcataagttttccctctaaaggaaattgttcatttcatttgcttgtcaaacttattgacatgagattatcaatatttctttttGAGATCTAGAGTGTGTACTGATGTTCTCTCT
i macNem1.NW_012012100v1   C 0 I 12157
s chlSab2.chr17             29896551 1338 -  71996105 tgctgcaggggtagggccctcatggagaacctctgctagggcagcgtggaagggaaatgt-ggggctggagcccccacacagagtccctaccagggcactgcatagtggagctgtgagaagatggctaccgtgttccagaccccaaaatggtagatccaccaacagcttgcactgtgcatctggaaaagacacagacacccag-gccacactgtgaaagcagccaggagggagcatataccctgcaaagccacaggggcagagctgcccaagatacggggacctaccttttacatcagcatgacctggatgtgagacacggagtcaaaagagatcatcttggagctttagaatttgactgccccactggatttaggacttgcatgggccctgtaactccttctttttggccaatttctcccatttggaatggctgtatttacccaatacctgtacctgcattgtatctaagaagtaactagcctgagtttgattttacacactaataggtggaagggacttggcttatctcagatgagattttgcactgtgaacttttgggttaatactgagatgaggaaagactttgggggattgttgggaagacatgattggtttt-gaaatgcaaggacatgagattcggaggggccaggggcagaatgatatgattgggctctgtgtccccacccaaatctcatcttgaattgtactcccataattcttacatgttgtaggagggacccagtgggagatcatttgaatcatgggggcagtttcccccacacggttcttgtggtattgaatcaggctcacaagatctgatgattttatcaggggtttctgcttttgtatcttactcattttctcttgccactgccatgtaaaaagtgcctttcaccttctgccatgattctgaggcctccccagccatgtggaattgtaagtccaattaaacttctttttcttcctagtcttcagtatgtctttatcagcagcgagaaattggactaatacagctggcttcatagattgaattgaaaaaagctgcctcctttaatttctaaaaggtatgtgtaaaattgatgttatttctgaattttatgtttgatacaattcatcagtgaagcct------cctggagtttcctatatgagaaggattttgattacaaattcaatttctacaatcaatatatggctgaccacattatctatctcttctcaggtcagttttcataagttttccctctaaaggaaattgttcatttcatttgcttgtcaaacttattgacatgagattatcaatatttctttttgagatctagagtgtgtactgatgttctctct
i chlSab2.chr17            C 0 I 12963
s manLeu1.NW_012107142v1      670418 1337 -    735854 tgctgcaggggtagggccctcatggagaacctctgctagggcagcgtggaagggaaatgt-ggggctggagcccccacacagagtccctaccagggcactgcctagtggagcggcgagaagacggctaccgtgttccagaccccaaaatggtagatccaccaacagcttgcactgtgcatctggaaaagacacagacactcag-gccacactgtgaaagcagccaggagggagcatataccctgcaaagccacaggggcagagctgcccaagatacggggacctaccttttgcatcagcatgacctggatgtgagacacagagtcaaaagagatcatcttggagctttagaatttgactgccccactggatttaggacttgcatgggccctgtaactccttcgttttggccaatttctcccatttggaatggctgtatttacccaatacctgtacctgcattgtatccaagaagtaactagcctgagtttgattttacacgctaataggtggaagggacttggcttgtctcagatgagattttggactgtggacttttgggttaatactgagatgaggaaagactttgggggattgttgggaaggcatga-tggtttt-gaaatgtgaggatatgagatttggagggaacaggggcggaatgatatggtttggttttgtgtccccacccaaatctcatcttgaattgtactcccataattcttacatgttgtaggagggacccagtgggagataatttgaatcatgggggcagtttcccccacacggttcttgtggtattgaatcaggctcacaagatctgatgattttatcaggggtttctgcttttgtatcttactcattttctcttgccactgccatgtaaaaagtgcctttcaccttctgccatgattctgaggcctccccagccatgtggaattttaagtccaattaaacttctttttcttcctagtcttgagtatgtctttatcagcagcgtgaaattggactaatacagctggcttcatagattgaattgagaaaagctgcctcctttaatttctaaaaggtatgtgtaaaattgatgttatttctgaattatatgttcgatacaattcatcagtgaagcct------cctggagtttcctatatgagaaggattttgattacaaattcaatttctacaatcaatatatggctgaccacattatctatctcttctcaggtcagttttcataagttttccctctaaaggaaatggttcatttcatttgcttgtcaaacttattgacatgagattatcaatatttctttttGAGATCTAGAGCGTGTACTGATGTTCTCTCT
i manLeu1.NW_012107142v1   C 0 I 19074
s colAng1.NW_012115577v1      554472 1339 -   1829203 tgctgcaggggtagggccctcatggagaacctctgctagggcagtgtggaagggaaatgtgggggctggagcccccatacagagtccctactagggcactggctagtggagctgtgagaagacggccaccgtgttccagaccccaaaatggtagatccaccaacagcttgcactgtgcatctggaaaagacacagacactcag-gccacactgtgaaagcagccaggagggagcatataccctgcaaagccacaggggcagagctacccaagatatggggacctaccttttgcatcagcatgacctggatgtgagacacggagtcaaaagagatcatcttggagctttagaatttgactgtcccactggatttaggacttgcataggccctgtaactccttcattttggccaatttcttccatttggaatggatgtatttacccaatacctgtacctacattgtatctaggaagtaactagcctgggtttgattttacacgctaataggtggaagggacttgccttgtctcagatgagattttggactgcggacttttgggttaatactgaaatgaggaaagactttgggggattgttgggaaggcacgattggtttt-gaaatgtgaggacatgagatttggaggggacaggggcggaatgatatgttttggctctgtgtccccacccaaatctcatcttgaattgtactcccataattcttacatgttgtaggagggacccagtgggagataatttgaatcatgggggcagtttcccccacacggttcttgtggtattgaatcaggctcacaagatctgatgattttatcaggggtttctgcttttgtatcttactcattttctcttgccactgccatgtaaaaagtgcctttcaccctctgccatgattctgaggcctccccagccatgtggaattgtaagtccagttaaacttctttttcttcctagtcttgagtatgtctttatcagcagcgtgaaattggactaatacagctggcttcatagattgaattgaaaaaaactgcctcctttaatttctaaaaggtatgtgtaaaattgatgttatttctgaattatatgtttgatacaattcatcagtgaagcct------cctggagtttcctatatgagaaggattttgattacaaattcaatttctacaatcaatatatggctgatcacattatctatctcttctcaggtcagttttcgtaagttttccctctaaaggaaattgttcatttcatttgcttgtcaaacttattgacatgagattatcaatatttctttttgagatctagagtgtgtactgatgttctctct
i colAng1.NW_012115577v1   C 0 C 0
e otoGar3.GL873550          18203763    0 -  18854210 I
e aotNan1.NW_018496901v1      287363 35491 -    486031 I
e cebCap1.NW_016107755v1     1103983 31740 -   1771730 I
e calJac3.chr4              30685650 23561 + 171630274 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e nomLeu3.chr1a             47781820    5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=182905.000000
s hg38.chr6_GL000254v2_alt   1753067 2223 +   4827813 tttattgctgaccttgttaatgtgtatgtttttgtcttgatcagtctggctagaaatttataaggtgtac-gatttttccctatagaaccaatatttggattcattaattttctctttctgcttcagttttttattttattattatttccttccttctgcatgcattggtttaatttgttcttctttgcttcttacaggagaaactaatttactaatttgagacctaccttctttcttaatataggcatttaaggatatcagttttttcttcagtactgcttgttgggaacaaatgctcagtgttgtaaagaaagatcagcactgagacaaaggatctctcagcaaggcaattgac-ttctgcagaaagggtgctacttatgatggaacgatggcgagtgcacacctgaacaaaggagagcaggggttttttataatctcttaatgcagcttgtccctgtaactgtgtcttgtctccattggctggagttggactgcacaatctaagctgaacctggctggctaacttgaaaagtgcaggaatgtggttataccaacagagagtgcagtcttggcgggaggagctgttgcaacaggagggttaatctatagagtgggtagcagatgtgggatgtggtctccatagataaggactggcgggaaatttgtttaccagggcaggggatacagagcgtaaggaagtctggccttgaaagcagggaacaaagagccaggatgctgagcaagttaaccc-ttaaagaggaactctttttatatctaacactacttcaactgcatcccatacatttgatatgttgtgcttcagtattcttcagaaaacagaagactttctaatttctcctgtgatttcctctttgaataagttgttattcagaattttgatgtttaatttccaatccttggtattttcATGATCGTCCgtcttagtcaatctgggcagttataaaagaattccatagtctatgtggcttgcatacaacagaaatctatttctcacagttccagaggctgggaagtcaaagatcaaggcctgggaagagtcagtgtatggtgagggctgcttcctgattcatggatgttgccgtttcttggtgtccccacgtggtggaaggagca---agcaatctggggtcccttttataagggcattcattttattaatgagggttttgccttcactgcatgatcactttctaatggcacaacctccaaacaccatcacattagagattaggtttcaattatgagtttaaggatgacaaaagcattcagtccCACATGACCAtcttattgttacagatttctaatgtatttccattatggccagaaaatatattctgtatgatttcaatgttttcaaatttattgttttatggactgaaatatggtttctcctggtaaatatatcattcatacttcagataatttgtgtttttcattgatgtgcatatgcatataaataaattaagtctgggtgcttgat-aatgcttttcaattttctatgtctttgctaaatttttcttagtttttgtatttatagctgaaagaaagctttaaaatgtctaaccatgtttgtagaattctctacttctctctgtaattttgtcaatttttcttcatgaactctgaagatttgctattggatccatttctggttgcatgtctttctgttgattttacccttttgttattatgaagcgcctctttttctctctggtaataca---tatttgaaaatcttttactggtagtaaaataaccatttcaatcctctgtgcttaatgtttgtatggcattgcttttttcatcaatttttatttatctgtgccttcatattgaaattgcatgttttgcatgcagatgtatgttcattgcagcacttgtcacaatagcaaagacatggaatcaacctaaatgcccatcaatggtgaactggataaagaaaatgtggcacatatgcaccatggaatattatgcagccataaaaaagaacgagatcatgtactttgcaggaacatggatggagctagaggccattatcctttgctaactaatgcagaaaaagaaaaccaattgccacatgttctcacttatgagtgggagctaaatgatgagaacatatggacatatagaagggaacaacacacaccggggcctacttgaaggcaacgggtggaaggagggagaggatcaagaaaaataatgaatggg
s colAng1.NW_012115577v1      555811 2223 -   1829203 tttattcctgacattgttaatgtgtat-cttttgtctttatcattctgactagaaatttataaagtgtactgatttttccatatagaaccaatatttgggctcattaattttctctttctgcttcaatttttgattttattattatttccttccttctgcatgctttggtttaatttgttcttctttgtttcttacaggagaaactaatttactaatttgagacctaccttctttcttaatataggcatttaaggatatcagtttttcttttagtactacttgttgggaacaaatgctcagtactgtaaataaagatcagcactgagacaaaggatctctcagcaaggcaattgactttctgcaaaaagggcactactcacgatggagcaatggcgagtgcacatctgaacaaaggagagcagggg-tttttataatctcttcatgcagcttgtacctgtaactgtgtcttacctccattggccggagttggactgcacaatctaagctgaacccagttggctaacttgaaaagtgcaggaatgtggttataccagcagagagtgcagtcttggcgggaggagccattgcgatgggagggttaatctatagagtgggtagcagatatggaatgtggtctccatagataaggactggtgggaagtttgtttaccggggcaggggacacagagagtaaggaagtctggccttgaaagcagggaacaaagagccaggacgctgagcaagttaaccctttgaagaggaactctttttatatctaacactacttcaactgcatcccatacatttgatatgttgtgtttcattatccttcagaaaacagaagactttctaatttctcttgtgatttcctctttgaataagttgtcactcagaattttgatgttcagtttccaatacttggtattttcATGATCGGCCgtcttagtcaatctgagcagttgtaaaagaattccatagtctatgtggcttgcaaacaacagaaatctatttctcacagttctggaggctgggaagtcaaacatcaaggcctgggaagagtcagtgtatggtgacggctgcttcttgattcatggatgttgcattttcttggtgtcctcacatggtggaaggggcaaggagcaatctggggtcccttttataagagcgtttatttcattaatgagagttttgccttcattgcatgatcactttctaatggtgccacctccaaacaccatcacattagagattaggtttcaattctgaatttaaggatgacaaaagcattcagtccCACAGGATCAtcttattgttacagatttctaatgtatttccattatggccagaaaatatattctgtatgatttcagtgttttcaaatttattgttttatggcctgaaatacagtttctcctggtaaatgtatcattcatacttgagataatttgtatttttcattgatgtgcatatgcacatgaataaattaagtctgggtgcttgataaatgcttttcaattttctatggctttgctaaatttttcttagtttttgtatttatagctgaaagaaagctttaaaatatttaaccatgtttgtagacttctccacttttctccataattttgtcaatttttcttcatgaactctgaagacttgctactggacccatttctggttgcatgtctttctgttgaatttacccgtttattattatgaagtgcctctttttctctctgataatatatattattcgaaaatcttttactggtagtaaaataagcatttcaatcccctgtgcttgctgtttatatggtattgcttttttcatc--------tttatctgtaccttcatattgaaattgcatgttttacatgcagatgtatggtcgttgcagcacttgccacaatagcaaagacatggaatcaacctaaatgcccatgaatggtgaactgaataaagaaaatgtggcgcatatgcaccatagaacattatgcagccataaaaaagaatgagatcatgtactttacaggaacatggatggagctagaggccattatcctttgctaactaatgcaggaacagaaaaccaattgccacatgttctcactcatgagtgggagctaaatgatgagaatataaggacacatagaggggaacaacacacgccggggcctagttgaaggtgaagggtggaatgagggggaggatcaagaaaaataatgaatggg
i colAng1.NW_012115577v1   C 0 I 1852
e otoGar3.GL873550          18203763    0 -  18854210 I
e aotNan1.NW_018496901v1      287363 35491 -    486031 I
e cebCap1.NW_016107755v1     1103983 31740 -   1771730 I
e calJac3.chr4              30685650 23561 + 171630274 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4              30406695 12127 - 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820    5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=0.000000
s hg38.chr6_GL000254v2_alt   1755290 997 +   4827813 tgctaggcttaatacctgggtgggtactaataggtacagaaactatatgactgtgggcagcaagccacccaggtgccgaggcaagagactgaaggcacaagctcttccagtataataaagaaaatacttaaaataaaaatagttgtattagacataaaatatagatatgattatgtataaatattactaatcattagtttatgacattactctttattccaatattataataatctttgttctacaattataacctagaaaaaaccaggccatacagagataggagctgaagggacacggtgagaagtgaacagaagacaagagtgtgagccctctgtcatgcctggacagggccactagagggctccttggtctggcggtaacgccagtgcctgagaaggcacccatcactcagcagatcgggaaagggagtctccctttgcccgggggagttagagaagcctctgctccaccacctcttgtggaaggcccgacatcagtcaagcccgcccacagccatctggaggcctaaacgtctccctgtgatgctgtgcttcagtggtcacgctcctgtttgactctcatgttccaccctctacacctggctcagccttctaaatagcagtagcaaaaattagtgaaagtactaaagtctttgaaatacatagaagaaataatgacataaactgtcccctctctctctccgcctcggctaccgaacagggaagggccccctgtctggtggacacgtgactcacgtgaccttacctatcattggagatggctcacactccttaccctgccaccttgtcttgtatccaataaataacagcgcagcctggcattcgaggccactatcagtctccgtgccttggtggtagtggtcccctgggcccaactctcttttcttctctttgtcttgtgtctttatttctacactctctcatctccacacacaaagagaaaaacccacaggtcctgtagggctggagcctac
e otoGar3.GL873550          18203763   0 -  18854210 I
e aotNan1.NW_018496901v1      287363 35491 -    486031 I
e cebCap1.NW_016107755v1     1103983 31740 -   1771730 I
e calJac3.chr4              30685650 23561 + 171630274 I
e colAng1.NW_012115577v1      558034 1852 -   1829203 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4              30406695 12127 - 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=55087.000000
s hg38.chr6_GL000254v2_alt   1756287 746 +   4827813 atatgacaaactctcatgatacaaatttacctatacaaaaa-cctgcacatgtaccctgaactaaaaataaaagttaaattaaaaaaaataaagttcatgtcttgaaaagagcatatggttgggttattttttttaatccagtcacagaatctctgcccttaattggagtgctgatttatgtaggtttttgtcattattgatatgataggttttaggtttgtcatgttatttgctcagtttttcttcctctgtttctcttttcctgaccaatgatttctcatcagaaaccagagaaacaaaataaactagaataacatctttaaa-gttctggaagaaataaaaggtcaactaagaattctatatccagtacagatgtccttcaagataaatgcaaaataaggagatatttcaggtaaaagataattaagagaatttgtcaccagcagatctgtacgataaaaattggtaaagaaagtgtctcaggctaaaagcaaatgataccaggtggaaaatgagattatcagaaaagatgaagaatgtgagaagtggtaaatattaagtgcgaaaggctatcttgctcccccccccccatttaatcttacttcatatacatagaactgtttaaaggtaaaataagatagctttctgatggggcttataacctatgtagatatattacatataatatctatggcataaaagatggacgttgtatagaggataaatggttgcaagatttctata--------------------tt
s calJac3.chr4              30709211 765 + 171630274 atatgacaaactcccataatacaaatttacctatataaaaaacctgcgcatgtaccctgaactaaaaataaaagttaaattaaaaaaaaaaaaactcatgtcttgaaaagagcatgtggttgggttattttttt-aatccactcacagaatctctgcccttaattggagtgttgctttatataggttttcgtcattattaatatgatagattttaggtctacagtgttattgtctcagcttttgtttCCGTATTCCTGTTGTCCtgaccaatgatttctcatcagaaaccacagaaacaaaataaagtagaataacatccttaaaagtgctggaagaaa--aaatgtcaactaagaattctatatcaagtacagatgtccttcaagataaaggcaaaataaggagatatttcaggtaaaagaaaattaacagaatttgccaccagcagatgtgtacaataaaaattggtaaagaaaaattttcaagctaaaagcaaatgataccaggtggaaaatgagattatcagaaaagatgaagatggtcagaagtggtaaattttaagtgcaaaaggctttcttactcccctcaccccatttaatcttactctatatacatagaactgtttaagggtaaaataagaaggctttcttgtggagcttataacctgtgtagatacatcacatataatatctatagcataaaagatggacattgcatagagaataaatggttgcaagatttctataaatatgtgtgtgtgtgtgtgtg
i calJac3.chr4             I 23561 C 0
e otoGar3.GL873550          18203763   0 -  18854210 I
e aotNan1.NW_018496901v1      287363 35491 -    486031 I
e cebCap1.NW_016107755v1     1103983 31740 -   1771730 I
e colAng1.NW_012115577v1      558034 1852 -   1829203 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4              30406695 12127 - 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=42058.000000
s hg38.chr6_GL000254v2_alt   1757033 181 +   4827813 tatgtgaactagtacattattaactgaaagtgggctgtgaaatgttaagaatgagttaagttctgaaggaaatcaagacacaaaaaaattcaatagatcaacaaattcaggagatgatttttgaaaaa--gttaataggatagataggctgatagctagactaataaggaagaaaagagaggc
s calJac3.chr4              30709976 181 + 171630274 tgtgtgaactagtacattattaactgaaagtgggctgtgaaatgttaagaatgAGTTAAGTTctgaaggaaatcaaaacacaaaaaaattcaaaagatcaacaaattcaggaaatggttttttgaaaacgaataatagtatagataggctgattgctagattaataaggaagaaa--agaggc
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496901v1      322854 181 -    486031 tatGGGAACTAGTACATTATTAACTGAAAGTGGGCTGTGAAATTTTAAGAATGAGTTAAGTTctgaaggaaatcaag--acaaaaaaattcaaaagatcaacaaattcaggagatgggtttttgaaaacaaataatagtatagataggctaatagctagactaataaggaagaaaagagaggc
i aotNan1.NW_018496901v1   I 35491 C 0
e otoGar3.GL873550          18203763   0 -  18854210 I
e cebCap1.NW_016107755v1     1103983 31740 -   1771730 I
e colAng1.NW_012115577v1      558034 1852 -   1829203 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4              30406695 12127 - 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=115739.000000
s hg38.chr6_GL000254v2_alt   1757214 253 +   4827813 gatcccaataagcataattagaaatgacaaaacagatgttaccactgactctgcagaagtaaaaa-taaccatcaaaagctactatgaacacctgtatgcacacaaactagaaaacctacaagagatcgataaattcttggaaacatacaccctccca-----------ggaagaaattgattccttgaaaggaccaataatgagctccaaaattaaatctgtaataaatagcctactaa----ccaaaaaaagccctgaacctgatgg
s colAng1.NW_012115577v1      559886 265 -   1829203 gatcccaaaaagcacaattagaaatgacaaaagagatgtcaccactgactctgcagaagtaaaaaataaccatcagaagctactatgaacacctgtatgcacacaaactagaatacctagaagagatagataagttactggaaacatacaccctcccaagactgaaccaggaagaaactgattccttgaaaggaccaataatgagctccaaatttaaatctgtaataaatagcctaccaa----ccaaaaaaagccctcaacctgatag
i colAng1.NW_012115577v1   I 1852 C 0
s calJac3.chr4              30710157 267 + 171630274 aatcccaataagcacaattagaaatgag-aaagagatgttaccactgactttgcggaaatacaaa-taaccatcagaagctactaggaacacctgtatgcacacaaactggaaaacctagaagagatagataaatccctggaaacatacaccctcccaagactgaaccaggaagaaattgattcctgaaaaggaccaatagtgaactccaaaatcgaatctgtaataaatagcctacaaaaaaaaaaaaaaaagccctgaacttgatgg
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018496901v1      323035 258 -    486031 gatcccaataagcacaattagaaatgac-aaagagatgttaccactgactttgcggaaataaaaa-taaccatcagaagctactatcaacacctgtatgcacacaaactggaaaacctagaagagatagataaattcctggaaacatacaccctcccaagactgaaccaggaagaaattgattcctggaaagggccaatagtgaactccaaaattgaatctgtaataaatagcct---------aaccaaaaagccctgaacttgatgg
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550          18203763   0 -  18854210 I
e cebCap1.NW_016107755v1     1103983 31740 -   1771730 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4              30406695 12127 - 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=324933.000000
s hg38.chr6_GL000254v2_alt   1757467 426 +   4827813 attcacagctgaattctaccagatggacgaagaagagctggtaccattcctactgaaactattccaaaaaattgtaaaggaggaactcctccccaactcattctatgaggccagcatcatcctgataccaaagcctggcagag-----acaaaacaaaaaaagaaaacttcaggtcaatatgtttgatgaacattgatgtaataatcctcaacaaggtacttgcaaaccaaatccagcagtccatcaaaaagctaatct-caatgatcaagtaggcttcatatccaggatgcaagattggttcaacacgtgcaaatcaataaatgtgattcatcacatacagggaactaaagacagaaaccacatgattatcttaatagatccagaaaaaccttttgataaaattcaacattcctttatgttaaaaacgctc
s colAng1.NW_012115577v1      560151 427 -   1829203 atccacagctgaattctaccagatggatgaagaagagctggtaccattccttctgaaactattccaagaaatttaagaggaggaactcctccccaactcattctatgaggccagcatcatcctgataccaaaacctggcagag-----acaaaacaaaaaaagaaaacttcaggtcaatatgtttgatgaacattgatgtaataatcctcaacaaagtacttgcaaacaaaatccagcagcccatcaaaaagctaatccaccatgatcaagtaggcttcatatccaggatgcaagattggctcaacatatgcaaatcaataaatgtgattcatcacatacatcgaactaaagacaaaaaccacatgattttcttaatagatccagaaaagccttttgataaaattcaaaacgcctttatgttaaaaacgctc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30710424 395 + 171630274 attcacagctgaattctaccagataaatgaagaagagctcataccattcctactgaaactattccaaaaaattgaa------------------------------gaggccagcatcatcccgata-------ctggcagagacaaaacaaaacaaaacaaggtaacttcaggtcaatatgtttgttgaacattgatgcaataaacctgaacaaagtacttgcaaaccaaatccagcaacccatcaaaaatcgaatccaccatgatcaagtaggcttcatatccaagatatcagattggttcaacatgtgcaaatcaataaatgtgattcatcacatacatagaattaaagacaaaaaccgtatgattatcttaatagatacagaaaaggcttttgataaaattcatcattcctttatgttaaaaactctc
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1135723 427 -   1771730 attcacagctgagctctaccagataaatgaagaagagctggtaccattcctaccaaaactattccaaaaaattgaagaggaggaactcctccccaactcattctatgaggccagcatcatcctgataccaaaacctggcagag-----acaaaacaaaaaatggtaacttcaggtcagtatgtttgatgaacattgatgcaataaacctgaacgaagtacttgcaaaccaaatccagcaacccatcaaaaagctaatccaccatgatcaagtaggcttcgtatccgagatgccagattggttcaacatatgcaaatcaataaatgtgattcatcacatatatagaattaaagacaaaaaccacatgattatcttaatagatccagagaagtcttttcataaaagtcatcattcctttatgttaaaaactctc
i cebCap1.NW_016107755v1   I 31740 C 0
s aotNan1.NW_018496901v1      323293 427 -    486031 attcacagctgaattctaccagataaatgaagaagagctggtaccattcctaccgaaacaattccaaaaagttgaaaagaaggaactcctccccaactcattctatgaggccagcatcatcctgataccaaaacctggcagag-----agaaaacaaaaaatgataacttcaggtcagtatgtttgatgaacattgatgcaataaacctgaacaaagtacttgcaaaccaaatccagcaacccatcaaaaagctaatccaccatgatcaagtaggcttcatatctgagatgcctgattggttcaacatatgcaaatcaataaatgtgattcatcacatatatagaattaaagacaaaaaccacatgattatcttaatagatccagaaaagccttttgataaaattcatcattcctttatgttaaaaactctc
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550          18203763   0 -  18854210 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4              30406695 12127 - 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=455660.000000
s hg38.chr6_GL000254v2_alt   1757893 400 +   4827813 aataaactaggtattgcaggaa---------catacctcaaaataataagagccatctatgacaaacaaacagccaacatcataccaaatgggggaagcattccccttgaaacccagcacaagacaaagatgccttctctcaccactcctattcaacagagtattggaagtcctggccacagcaataaggcaagagaaagaaataaaaggcat------------aggggaagtcagact-acccctgtttgcagacCATTACCAGTGAatgttcccttaaggctcacaggctcttatatcagcttgtggtgagtgctgctaACTAGTCTTTAATGGATTAAAATGTATAATGTGTTTCACTTGtgtattagtatgttttcacactgctggtaaagacatacctgagactgggcaatttaca
s macFas5.chr4             140702076 410 + 170955103 aataaactaggtattaaaggaa---------catacctcaaaataataagagccatctatgacaaaccaacagccgacatcatactaaatgagggaagcattccccttgaaacccagcacaagacaaagctgccttctctcatcactcctattgaacagagtactggaagtcctggccagaggaataaggcaagagaaagaaataaagggcatctaaataggaagaagggatgtcagact-aacc--gtttatagttgacTATCAACAAatattccctcaaggctcacgggctcttgtatcagctcatggtgaaagctgccTACTAGTCTTTAATCGATTAAAATGTATAATATGTTTCACTTGtgtgttagtctgttttcacactgctggtaaagacatactggagacccggcaatttaca
i macFas5.chr4             n 12127 C 0
s colAng1.NW_012115577v1      560578 419 -   1829203 aataaactaggtattgaaggtagctagtatttatacctcaaaataataagagacatctatgacaaaccaacagctaacatcatacccaatgggggaagcattccccttgaaacctagcacaagacaaagatggc--atctcaccactcctattcaacagagtatagaaagtcctggccagagcaataaggcaagagaaagaaataaagggcatctaaataaaaagaggggaagacaaact-acccctgtttgcagacCATTACCAGTGAatgttcccttaaggcccatgggctcttctatcagctcgtggtgagtgctgcTTACTAGTCGTTAATGGATTAAAGTGTATAATGTGTTTCACTTGtgtgttagtctgttttcacactgctggtaaagacatacctgagactgggcaatttaca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30710819 412 + 171630274 aataaactaggtattgaaggaa---------catacctcaaaataacaagagccatctatgacaaactgacagccaacataataccaaatgggggaagcattccccttgtaaactagcacaagacaaggatgccttctcttaccactcgtattcaacagagtactggaagtcctggccagagcaataaagcaagaaaaagaaatagagggcatctaaacaggaagaggggaagtcaagct-acccctgtttgtagatgactaccagcaaatgttcccttaaggcccacaggctcttatatcagctggtagtgaatgctgccTACTAGTCTTTAATGGATTAAAATGTGTAATATGTTTCACTTGtgtattagtctgttttcacactgatggtaaagatatactcgagactgtgcaatttaca
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1136150 410 -   1771730 aataaactagatattgaaggaa---------catacctcaaaataataagagccatctatggcaaactgacagccaacatcacaccaaatgggggaagcattccccctgaaaattagcacaagacaaggatgccttctctcaccactactattcaacagagtactggaagtcctggccagagcaatgaaacaagagaaataaataaaaggcatctaaataggaagaggggaagtcaagct-gcccctgtttgtagatgTctaccagcaaatgttcccttaaggcccacgggctcttatatgatctcgtggtgaatgctgccTACTAGTCTTTAATGGATTAAAATGTGTAGTATGTTTCACTTGtgtattagtc--ttttcatgctgctggtagagatatacccgagactgtgcaatttaca
i cebCap1.NW_016107755v1   C 0 I 144
s aotNan1.NW_018496901v1      323720 410 -    486031 actaaactaggtattgaaggaa---------catacctcaaaataataagagccatctatgacaaactgacagccaacatcacaccaaatgggggaagcattccccctgaaagctagcacaagacggggatgccttttctcaccactcctattcaacagaatattggaagtcctggccagagcaataa---aagagaaagaaataaagcacatttaaatacaaagaggggaagtcaagctaacccctgtttgtagatgTctaccagcaaatgttcccttaaggcccacgggctcttatatgagctcatggtgaatgctgccTACTAGTCTTTAATGGATTAAAATGTGTAGTATGTTTCACTTGtgtattagtctgttttcacactgctggtaaagatatacccgagactgtgcaatttaca
i aotNan1.NW_018496901v1   C 0 I 143
e otoGar3.GL873550          18203763   0 -  18854210 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=194355.000000
s hg38.chr6_GL000254v2_alt   1758293 165 +   4827813 aaagaaagaggtttaacggacttaatggttccacatggctggggaggcctcacaatcacggtggaaggcaaggaggagcaagtcacatcttgtgtggatggcagcaggcaagaagagagagctcgtgcaggaaaactcccatttttttaaaaccattagatctca
s macFas5.chr4             140702486 160 + 170955103 ----aaagaggtttaacggagttaacagttccacatggctggggaggcctcacgatcatggtggaaggcaaggaggagcaagtcacatcttgcgtggatggcagcaggcaaggagagagagctcgtgcaggaaaact-ccatttttaaaaaaccatcaggtctca
i macFas5.chr4             C 0 n 0
s colAng1.NW_012115577v1      560997 165 -   1829203 aaagaaagaggtttaatggacttaatggttccacatggctggggaggcctcacaatcatggtggaaagcaaggaggagcaagtcacatcttgtgtggatgacagcaggcaaggagagagagctcgtgtaggaaaactcccgtttttttaaaaccatcagctctca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30711231 165 + 171630274 aaagaaagaggtttaatggacttaacagttccacatggctggggaggcctcacaatcatggtgggaggcaaggaggagccagtctcatctcacgtggatggcagcaggcaaggagagagcgctcatgcaggaaaactcccatttctataaaaccatcagctctca
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1136704 163 -   1771730 aaagaaagaggtttaatggacttaacagttccacatggctggggaggcctcacaatcatggtgggaggcaaggaggagccagtctcatctcaggaggatggcagcaggtaaggagaga--actcatgcaggaaaattcccatttctataaaaccatcagatctca
i cebCap1.NW_016107755v1   I 144 C 0
s aotNan1.NW_018496901v1      324273 163 -    486031 aaagaaagaggtttaatggacttaacagttccacatggctggggaggcctcacaatcatggtgggaggcaaggaggagccagtctcatctcacgtggatggcagcaggcaaggagaga--gctcatgcagtaaaattcccatttctataaaaccatcagatccca
i aotNan1.NW_018496901v1   I 143 C 0
e otoGar3.GL873550          18203763   0 -  18854210 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=89366.000000
s hg38.chr6_GL000254v2_alt   1758458 105 +   4827813 tgagactcattcgctatcacaagaacagtgcaggaaagacccatccaaaaattcaatcacctcccactaggttcctcccatgacaggtgggaattgtgggagtta
s colAng1.NW_012115577v1      561162 105 -   1829203 tgagacttattcgctatcacgagaacagtgcaggaaagacccatccaataattcaatcacctcccactaggttcctcccatgacaggtgggaattgtgggagtta
i colAng1.NW_012115577v1   C 0 I 4
s calJac3.chr4              30711396 103 + 171630274 tgagactcattcactatcac--gaacagcacaggaaagacccacccaataattcaatcacctcccaccaggttcctctcatgacaggtgggaattgtaggagtta
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1136867 105 -   1771730 tgagactcattcactatcacgagaacagcacaggaaagacccacccaataattcaatcacttcccaccaggttcctcccatgacaggtgggaactgtgggagtta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      324436 105 -    486031 taagactcattcactatcacgagaacagcgcaggaaagacccacccaataattcaatcacctcccaccaggttcctcccatgacaggtgggaattgtgggagtta
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550          18203763   0 -  18854210 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4             140702646   0 + 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=62663.000000
s hg38.chr6_GL000254v2_alt   1758563 126 +   4827813 caactgaagatgtgatttgggtggggacacagccaaaccatatcaACTTGTAAATTACTACAAAACTGTCAACACTTAGCCACTTCTGCTTCCTCAGGAAGGTCGGGGCAGCAGATCTGTGTGTTA
s calJac3.chr4              30711499 125 + 171630274 caattgaagatgagatttgagtggggacacagccacaccacatcaACTTGTAAATTACTACAAAACTTTCAACACTTAGCCAC-TCTGCCTCCTCAGGAAGGTTGGGACCGCAGACCTGTGTGTTA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1136972 125 -   1771730 caactgaagatgagatttgagtggggacacagccacaccatattaACTTGTAAATTACTACAAAGCTTTCAACACTTAGCCAC-TCTGCCTCCTCAAGAAGGTTGGGACAGCAGACCTGTGTGTTA
i cebCap1.NW_016107755v1   C 0 I 20
s aotNan1.NW_018496901v1      324541 125 -    486031 caattgaagatgagatttgagtggggacacagccacaccatatcaACTTGTAAATTACTACAGAACTTTCAACACTTAGCCAC-TCTGCCTCCTCAGGAAGGTCAGGACAGCAGACCTGTGTGTTA
i aotNan1.NW_018496901v1   C 0 I 20
e otoGar3.GL873550          18203763   0 -  18854210 I
e colAng1.NW_012115577v1      561267   4 -   1829203 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4             140702646   0 + 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=1023.000000
s hg38.chr6_GL000254v2_alt   1758689 20 +   4827813 AATATCTATGTGAAGTTATT
s calJac3.chr4              30711624 20 + 171630274 GACATTGATGTAGAGTTATT
i calJac3.chr4             C 0 C 0
e otoGar3.GL873550          18203763  0 -  18854210 I
e aotNan1.NW_018496901v1      324666 20 -    486031 I
e cebCap1.NW_016107755v1     1137097 20 -   1771730 I
e colAng1.NW_012115577v1      561267  4 -   1829203 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4             140702646  0 + 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820  5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=0.000000
s hg38.chr6_GL000254v2_alt   1758709 53 +   4827813 TCCAGGAAGAAGTTTCATCTGTGGTTTCTTCTTCCCCAGGTCCCACAGTCTTC
e otoGar3.GL873550          18203763  0 -  18854210 I
e aotNan1.NW_018496901v1      324666 20 -    486031 I
e cebCap1.NW_016107755v1     1137097 20 -   1771730 I
e calJac3.chr4              30711644  0 + 171630274 C
e colAng1.NW_012115577v1      561267  4 -   1829203 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4             140702646  0 + 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820  5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I
e panPan2.chr6             142811776 1312 - 173848474 I
e panTro5.chr6             144787893 1313 - 175400573 I

a score=433473.000000
s hg38.chr6_GL000254v2_alt   1758762 1543 +   4827813 ATTACAACCTCACGGTGCTGTCCCAGGATGGATTTGTATAGTCAGGGTTTCTCGCTGAGGGACATCTGGATGGTCAGCCGTTCCTGCTCTATGACAGACAGAAAGGCAGGGCAGGGGCCCTGTGGACAGTTGGCAGAAGCAGTcctgggagctgagacctgggacacagagaccgaggacttgACAGAGAATGGGCAGGACCTCAGGAGGACCCTGACTCATATCAAGGGCCAGAAAGGAGGTGAGAGTCGGCAGGGGCAAGAGTAATGGCAGAGGCCTTCTCCAGGAGAGTTGGAGGCAGAGAGCAGGGACCTGTCTCTTCCCACTGGATCTGGCTGAGGGTGGGCTGAGAAATAGGGGTCAGTGGGGCTCAGCAGGGAGGTGAGCCGGCACTCAGCCCACTCAGGGAGACATGGAGGAGGGCCAGGGAGGGGTCCCAGCTGGGCTGAGTTCCTCACTTGGGTGGGAAGATGAGGGGTTCAGGAATGAACTGCTGGGTGGGGGCAGGCTTGCATTCCCTCCAGGAGATTAGGGTCTGTGAGATCCATGAAGACAGCAGCACCAGAGGCTCCCGGCATTTCTACTATGATGGGGAGCTCTTCCTCTCCCAAAACCTGGAGACTCAGGAATGGACAGTGCCCCAGTCCTCCAGAGCTCAGACCTTAGCTATGAATATCAGAAATTTCTGGGATGAAGATGCCACACAGGCCAAGACACTTTCACCCTGTGATGGCAGACCGTCTGCAGAAACTACAGTAACATCTCGAATCCTAGGAGGGCATCAGGAGAACAGGTACCGACCCTGGGCAGGGGCTTTCCTCTCCCCCATTTCACTAGAGTCACTCCCCTGCCAGCTCTGTCCTGGGAAACCCTCTCTGTGCTATGGATGCAGGCGTTTCCTGTTGGCGTATTGTGTCCTGACTTTCCTCTCTTGTTAGAGGCACTGGATAAAGACAGTGGGTTGGGGACTGAACCATCCAGTGTTGTAATCTGGGAAAGCAATGGCCCACTCCCAACAGAATCCTCACCCTGGGGTGGGTGTTAGGCAGGAGAGGAAGCCCTCAGGGCTAGGGCTGCCCCCTCTGCCTCCCAGCCTGCCCATCCCAGAGAGTTCCCTCCTGGCCTCATGACCCAGCAGTCCAATCCTGACATCCCTCCCCTTCAGCATCAATGTGGGGATCTCAGAGCCTGAGGCCATAGTCTGAGGCCCATCCTCCTGCCAGCCCAAAGGAATTGGGCCCCAGGGTAAGGACAGACTTGCAAAAGGTCCGGGGTCCATGAGGGCTTCAGCCAGAGTGAGAACACTGGAGAGGAGCAGCCCTGTTCCCTGAGTCTCCCTTAGAGGGAGCGGGGCTTGGCCATGTGCCTCACTGGTTCTGCCCTTTCCTATCCAGTGCCTACCATGGTGAATGCCAGGCCTCAGAGAACAAAGTCACCCCCACATGCTGGGCTTCCGGCTTCTATCCCCAGAATATCTCTCTGGCCTGGTGTCAGGTTGGGGCATTTTCTGAGCCAGGATGCCCATCGGTCTGTGGGTGTCCTG
s panTro5.chr6              30604965 1538 + 175400573 ATTACAACCTCACGGTGCTGTCCCAGGATGGATTTGTATAGTCAGGGTTTCTCGCTGAGAGACATCTGGATGGTCAGCCGTTCCTGCTCTATGACAGACACAAAGGCAGGGCAGGGGCCCTGGGGACAGTTGGCAGAAGCAGTcctgggagctgagacctgggacacagagaccgaggacttgACAGAGAATGGGCAGGACCTCAGGAGGACCCTGACTCATATCAAGGGCCAGAAAGGAGGTGAGAGTCGGCAGGGGCAAGAGTAATGGCAGAGGCCTTCTCCAGGAGAGTTGGAGGCAGAGAGCAGGGACCTGTCTCTTCCCACTGGATCTGGCTGAGGGTGGGCTGAGAAATAGGGGTCAGTGGGGCTCAGCAGAGAGGTGAGCCAGCACTCAGCCCACACAGGGAGACATGGAGGAGGGCCAGGGAGGGGTCCCAGCTGGGCTGAGTTCCTCACTTGGGTAGGAAGGTGAGGGGTTCAGGAATGAACTGCTGGGTGGGGGCAGGCTTGCATTCCCTCCAG---ATTAGGGTCTGTGAGATCCATGAAGACAGCAGCACCAGAGGCTCCCGGCATTTCTACTATGATGGTGAGCTCTTCCTC--CCAAAACCTGGAGACTCAGGAATGGACAGTGCCCCAGTCCTCCAGAGCTCAGACCTTAGCTATGAATATCAGAAATTTCTGGGATGAAGATGCCACACAGGCCAAGACACTTTCACCCTGTGATGGCAGACCGTGTGCAGAAACTACAGTAACATCTCAAATCCTAGGAGGGCATCAGGAGAACAGGTACCGACCCTGGGCAGGGGCTTTCCTCTCCCCCATTTCACTAGAGTCACTCTCCTGCCAGCTCTGTCCTGGGAAACCCTCCCTGTGCTATGGATGCAGGCGTTTCCTGTTGGCGTATTGTGTCCTGACTTTCCTCTCTTGTTAGAGCCACTGGATAAAGACAGTGGGTCGGGGACTGAACCATCCAGTGTTGTAATCTGGGAAAGCAACGCCCCACTCCCAACAGAATCCTCACCCTGGGGTGGGTGTTAGGCAGGAGAGGAAGCCCTCAGGGCTAGGGCTGCCCCATCTGCCTCCCAGCCTGCCCATCCCAGAGAGTTCCCTCCTGGCCTCATGACCCAGGAGTCCAACCCTGACATCCCTCCCCTTCAGCATCAATGTGGGGATCTCAGAGCCTGAGGCCATAGTCTGAGGCCCATCCTCCTGCCAGCCCAAAGGAATTGGGCCCCAGGGTAAGGACAGACTTGCAAAAGGTCCGGGGTCCATGAGGGCTTCAGCCAGAGTGAGAACACTGGAGAGGAGCAGCCCTGTTCCCTGAGTCTCCCTTAGAGGGAGCGGGGCTTGGCCATGTGCCTCACTGGCTCTGCCCTTTCCTATCCAGTGCTCACCATGGTGAATGCCAGGCCTCAGAGAACAAAGTCACCCCCACATGCTGGGCTTCCGGCTTCTATCCCCAGAATATCTCTCTGGCCTGGTGTCAGGTTGGGGCATTTTCTGAGCCAGGATGCCCAGCGGTCTGTGGGTGTCCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31028995 1538 + 173848474 ATTACAACCTCACGGTGCTGTCCCAGGATGGATTTGTATAGTCAGGGTTTCTCGCTGAGGGACATCTGGATGGTCAGCCGTTCCTGCTCTATGACAGACACAAAGGCAGGGCAGGGGCCCTGGGGACAGTTGGCAGAAGCAGTcctgggagctgagacctgggacacagagaccgaggacttgACAGAGAATGGGCAGGACCTCAGGAGGACCCTGACTCATATCAAGGGCCAGAAAGGAGGTGAGAGTCGGCAGGGGCAAGAGTAATGGCAGAGGCCTTCTCCAGGAGAGTTGGAGGCAGAGAGCAGGGACCTGTCTCTTCCCACTGGATCTGGCTGAGGGTGGGCTGAGAAATAGGGGTCAGTGGGGCTCAGCAGAGAGGTGAGCCAGCACTCAGCCCACACAGGGAGACATGGAGGAGGGCCAGGGAGGGGTCCCAGCTGGGCTGAGTTCCTCACTTGGGTGGGAAGGTGAGGGGTTCAGGAATGAACTGCTGGGTGGGGGCAGGCTTGCATTCCCTCCAG---ATTAGGGTCTGTGAGATCCATGAAGACAGCAGCACCAGAGGCTCCCGGCATTTCTACTATGATGGTGAGCTCTTCCTC--CCAAAACCTGGAGACTCAGGAATGGACAGTGCCCCAGTCCTCCAGAGCTCAGACCTTAGCTATGAATATCAGAAATTTCTGGGATGAAGATGCCACACAGGCCAAGACACTTTCACCCTGTGATGGCAGACCGTGTGCAGAAACTACAGTAACATCTCAAATCCTAGGAGGGCATCAGGAGAACAGGTACCGACCCTGGGCAGGGGCTTTCCTCTCCCCCATTTCACTAGAGTCACTCTCCTGCCAGCTCTGTCCTGGGAAACCCTCCCTGTGCTATGGATGCAGGCGTTTCCTGTTGGCGTATTGTGTCCTGACTTTCCTCTCTTGTTAGAGCCACTGGATAAAGACAGTGGGTCGGGGACTGAACCATCCAGTGTTGTAATCTGGGAAAGCAACGCCCCACTCCCAACAGAATCCTCACCCTGGGGTGGGTGTTAGGCAGGAGAGGAAGCCCTCAGGGCTAGGGCTGCCCCATCTGCCTCCCAGCCTGCCCATCCCAGAGAGTTCCCTCCTGGCCTCATGACCCAGGAGTCCAACCCTGACATCCCTCCCCTTCAGCATCAATGTGGGGCTCTCAGAGCCTGAGGCCATAGTCTGAGGCCCATCCTCCTGCCAGCCCAAAGGAATTGGGCCCCAGGGTAAGGACAGACTTGCAAAAGGTCCGGGGTCCATGAGGGCTTCAGCCAGAGTGAGAACACTGGAGAGGAGCAGCCCTGTTCCCTGAGTCTCCCTTAGAGGGAGCGGGGCTTGGCCATGTGCCTCACTGGCTCTGCCCTTTCCTATCCAGTGCTCACCATGGTGAATGCCAGGCCTCAGAGAACAAAGTCACCCCCACATGCTGGGCTTCCGGCTTCTATCCCCAGAATATCTCTCTGGCCTGGTGTCAGGTTGGGGCATTTTCTGAGCCAGGATGCCCAGCGGTCTGTGGGTGTCCTG
i panPan2.chr6             C 0 C 0
e otoGar3.GL873550          18203763    0 -  18854210 I
e aotNan1.NW_018496901v1      324666   20 -    486031 I
e cebCap1.NW_016107755v1     1137097   20 -   1771730 I
e calJac3.chr4              30711644    0 + 171630274 C
e colAng1.NW_012115577v1      561267    4 -   1829203 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4             140702646    0 + 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820    5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=1828559.000000
s hg38.chr6_GL000254v2_alt   1760305 1591 +   4827813 CCCAATGGGAATGGGACCTACCAGACCTGGGTGGCCACTAAGATTCCCCAAGAAGAGGAGCAGAGGGCTACCTGCTATGTGGGACACAGCAGGAATCACAGCACTTACCCTGGTGTCCTCTGGTGAGCCTGGGGCGACCCTCAAGTGTTCTGACCTAGAAAGGGTCAGGCCAAGGTGGGCACAGCAGAGATAACTGGAACTCTGAGTGCCCAGTGTGCAACAAGGCC-----------CTTTTTTTCAGGGAAAGCCCTGATGCTTCAGAGTCTATGGCAACCGTTCCATATGTTGCGGCTGCTGCTG---------TTTTTGTTATCATTATTATTATTCTCTGTGTCCTTTGGTGCAAGAAGAAAATATCAGCTGCAGAGGACCCAGGTGAAAAAAGGGGGCAGTGGCTGGAGATGGGAGGGACCCTGTCTGGGCAGTAGGGTCCCCTCATAGCTCCTGCACAGACAGGCATGTAGGTGACAAGGCTT-TGGAACAGGGTTTGGAAGTTGGGGTATTTGGGAGGGGAATAGGAGCTACAATTTCATCTAGACCCCTAAGTCCTGCCCAAGCCAGGGCCGGGCCAAAGCCCTCGAA----TGTCCATCTGTGGCCTCCTCTTGCTGCAGGTGAGGAGTGGGCAGCAAGGAGGGCCGTGGCACCTGCTCTGTCCTCATCCCCATCCCTCTGTCTCTCAGGCTCACCAGCGTGCATCAGCGTGGGGTGAGCTGGGAATCATGTGCTGATTGCTGAGGGCCTGGATGATGATGGCTTCAGAGGGGGCAAATAGTAAAGACGGCTGTGATCTGGAGAGGGCTAGAAACTGGAGAGGAATATGAGGAGAGGTGGTGCCTCTAGTCCCTTCCTCTCTGCATCCGCCTCCCCTGTTTCTCCAGCCATCAGGAGGACACCAAGAAAAAGACCTATGAGGCCCAGACTGGGGGG-CCTGCCTGTGCAGCCCCTTGGAGACCCCCTTGTAACAGGGAGGGTTCTGAGTGCACACAGCCATCTTTGTCCACTTTGTAGCTCCCCACGCACCTCCTCCAGGAGCTGTCTCGGGGGTGTCGTGTCTCCTGGATCACTCGAGGCCGTGCTCTTTCCAGGTTCCCACCACATGGCCCTGCA-CCCTGAGTTCCCTTGCAGATAATATGGATGAGAAGATACGCAGATGTCTCTGGGCCATTTGGGGAGTGGTGACCAGCCCCTTGTCAGGGCAGCTGTCATCCCTGTTTTCATCCTACTTCTAGGTGTTTCCTTGTCCAGGCCCTGAAGGACACAGTCCCTCAGGGACACAGTGCTCAGGGACCATGTTTTTTGGGCTTTGTTCTGTGCTCTGTGGCCTCACCTTGCCCTCCCTGAG--------CCTTTCTCAAGGTGGTCACTTTCCTGTAAATTTGGAGTAAAGGATGGTCAGGATGATTTCCCCCACAGTCAGTTGTTTGAGGGGAAAGTAAAAGAGAAAACAGGAAGTTTTGTGTTTCTGCAAAGACAGAGGCAGTGCAGGGGACAGTGAGAGGCTGGGTGTCCAGGAAACTGGAGTCTTTCTGCCATTTCCCCACTTTTTTGCACCTGGTGGTGGGGGTGGGGGTTTTTCATCCTTGAACCTAATTGCACTGTC
s panTro5.chr6              30606503 1593 + 175400573 CCCAATGGGAATGGGACCTACCAGACCTGGGTGGCCACTAAGATTCCCCAAGAAGAGGAGCAGAGGGCTACCTGCTATGTGGGACACAGCAGGAATCACAGCACTTACCCTGGTGTCCTCTGGTGAGCCTGGGGCGACCCTCAAGTGTTCTGACCTAGAAAGGGTCAGGCCAAGGTGGGCACAGCAGAGATAACTGGAACTCTGAGTGCCCAGTGTGCAACAAGGCC-----------CTTTTTTTCAGGGAAAGCCCTGATGCTTCAGAGTCTATGGCAACCATTCCGTATGTTGCGGCTGCTGCTG---------TTTTTGTTATCATTATTATTATTCTCTGTGTCCTTTGGTGCAAGAAGAAAATATCAGCTGCAGAGGACCCAGGTGAAAAAAGGGGGCAGTGGCTGGAGATGGGAGGGACCCTGTCTGGGCAGTAGGGTCCCCTCATAGCTCCTGCACAGACAGGCATGTAGGTGACAAGGCTT-TGGAACAGGGTTTGGAAGTTGGGGTATTTGGGAGGGGAATAGGAGCTACAATTTCATCTAGACCCCTAAGTCCTGCCCAAGCCAGGGCCGGGCCAAGGCCCTCGAA----TGTCCATCTGTGGCCTCTTCTTGCTGCAGGTGAGGAGTGGGCAGCAAGGAGGGCCATGGCACCTGCTCTGTCCTCATCCCCATCCCTCTGTCTCTCAGGCTCACCAGCGTGCATCAGGGTGGGGTGAACTGGGAATCATGTGCTGATTGCTGAGGGCCTGGATGATGATGGCTTCAGAGGGGGCAAATAGTAAAGACGGCTGTGATCTGGGGAGGGCTAGAAACTGGAGAGGAATACGAGGAGAGGTGGTGCCTCTAGTCCCTTCCTCTCTGCATCCCCCTCCCCTGTTTCTCCAGCCATCAGGAGGACACCAAGAAAAAGACCTATGAGGCCCAGACTGGGGGGGCCTGCCTGAGCAGCCGCTTGGAGACCCCCTTGTAACAGGGAGGGTCCTGAGTGCACACAGCCATCTTTGTCCACTTTGTAGCTCCCCACGCGCCTCCTCCAGGAGCTGTCTCGGGGGTGTCGTGTCTCCTGGATCACTCAAGGCCGTGCTCTTTCCAGGTTCCCACCACATGGCCCTGCATCCCTGAGTTCCCTTGCAGATAATATGGATGAGTAGATATGCAGATGTCTCTGGGCCATTTGGGGAGTGGGGACCAGCCCCTTGTCAGGGCAGCTGTCATCCCTGTTTTCATCCTACTTCTAGGTGTTTCCTTGTCCAGGCCCTGAAGGACACAGTCCCTCAGGGACACAGTGCTCAGGGACCATGTTTTTTGGGCTTTGTTCTGTGCTCTGTGGCCTCACCTTGCCCTCCCTGAG--------CCTTTCTCAAGGTGGTCACTTTCCTGTAAATTTGGAGTAAAGGATGGTCAGGATGATTTCCCCCACAGTCAGTTGTTTGAGGGGAGAGTAAAAGAGAAAACAGGAAGTCTTGTGTTTCTGCAAAGACAGAGGCAGTGCAGGGGACAGTGAGAGGCTGGGTGTCCAGGAAACTGGAGTCTTTCTGCCATTTCCCCACTTCTTTGCACCTGGTGGTGGGGGTGGGGGTTTTTCATCCTTGAACCTAATTGCACTGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31030533 1591 + 173848474 CCCAATGGGAATGGGACCTACCAGACCTGGGTGGCCACTAAGATTCCCCAAGAAGAGGAGCAGAGGGCTACCTGCTATGTGGGACACAGCAGGAATCACAGCACTTACCCTGGTGTCCTCTGGTGAGCCTGGGGCGACCCTCAAGTGTTCTGACCTAGAAAGGGTCAGGCCAAGGTGGGCACAGCAGAGATAACTGGAACTCTGAGTGCCCAGTGTGCAACAAGGCC-----------CTTTTTTTCAGGGAAAGCCCTGATGCTTCAGAGTCTATGGCAACCATTCCGTATGTTGCGGCTGCTGCTG----------TTTTGTTATCATTATTATTATTCTCTGTGTCCTTTGGTGCAAGAAGAAAATATCAGCTGCAGAGGACCCAGGTGAATAAAGGGGGCAGTGGCTGGAGATGGGAGGGACCCTGTCTGGGCAGTAGGGTCCCCTCATAGCTCCTGCACAGACAGGCATGTAGGTGACAAGGCTT-TGGAACAGGGTTTGGAAGTTGGGGTATTTGGGAGGGGAATAGGAGCTACAATTTCATCTAGACCCCTAAGTCCTGCCCAAGCCAGGGCCGGGCCAAGGCCCTCGAA----TGTCCATCTGTGGCCTCTTCTTGCTGCAGGTGAGGAGTGGGCAGCAAGGAGGGCCATGGCACCTGCTCTGTCCTCATCCCCATCCCTCTGTCTCTCAGGCTCACCAGCGTGCATCAGGGTGGGGTGAACTGGGAATCATGTGCTGATTGCTGAGGGCCTGGATGATGATGGCTTCAGAGGGGGCAAATAGTAAAGACGGCTGTGATCTGGGGAGGGCTAGAAACTGGAGAGGAATACGAGGAGAGGTGGTGCCTCTAGTCCCTTCCTCTCTGCATCCCCCTCCCCTGTTTCTCCAGCCATCAGGAGGACACCAAGAAAAAGACCTATGAGGCCCAGACTGGGGGG-CCTGCCTGAGCAGCCGCTTGGAGACCCCCTTGTAACAGGGAGGGTCCTGAGTGCACACAGCCATCTTTGTCCACTTTGTAGCTCCCCACGCGCCTCCTCCAGGAGCTGTCTCGGGGGTGTCGTGTCTCCTGGATCACTCAAGGCCGTGCTCTTTCCAGGTTCCCACCACATGGCCCTGCATCCCTGAGTTCCCTTGCAGATAATATGGATGAGTAGATATGCAGATGTCTCTGGGCCATTTGGGGAGTGGGGACCAGCCCCTTGTCAGGGCAGCTGTCATCCCTGTTTTCATCCTACTTCTAGGTGTTTCCTTGTCCAGGCCCTGAAGGACACAGTCCCTCAGGGACACAGTGCTCAGGGACCATGTTTTTTGGGCTTTGTTCTGTGCTCTGTGGCCTCACCTTGCCCTCCCTGAG--------CCTTTCTCAAGGTGGTCACTTTCCTGTAAATTTGGAGTAAAGGATGGTCAGGATGATTTCCCCCACAGTCAGTTGTTTGAGGGGAGAGTAAAAGAGAAAACAGGAAGTCTTGTGTTTCTGCAAAGACAGAGGCAGTGCAGGGGACAGTGAGAGGCTGGGTGTCCAGGAAACTGGAGTCTTTCTGCCATTTCCCCACTTCTTTGCACCTGGTGGTGGGGGTGGGGGTTTTTCATCCTTGAACCTAATTGCACTGTC
i panPan2.chr6             C 0 C 0
s calJac3.chr4              30711644 1576 + 171630274 CCCAATGAGAATGGGACCTACCAGACCTGGACGGCCACCAAGATTCACTGAGGAGAGGAGCAGAGGGTCATCTGCTATGTGGGGCACAACAGGCATCACAACACTCACCCT-GTGCCCTctgatgaacctggggcgaccctcagggattctgatctaaAAAGCATCAGGCCAGGGTGGGGACAGCAGAGATAACTGGAGCTCTGGGTACGCAGTGTGCAACAGGGCC-----TTTTTGTTGTTGTTCAGGGAAAGACCTGGTGCTTCAGAGTCTATGGCAGCTGTTTCGTAtgttgctgttgctgctgctgctgcagctttggctg-cATTATTATTATTCTCTGTGTCCTTTGGTGCAAGAAAAAGCTGTCAGCTACAGAGGACCCAGGTGAGAAACTGGGGCAGTGGCTGGAGATGGGAAGGCTCCTGTCTGGGTAGTAGGGTCCCCTCATTGTTCCTGCACAGATAGGCATGTAGGTGACAAGGCTTCTGGAACAGGGGTTGAAAGCTGAGGTATTTTGGAGGGGAACAGGAGCCACATCTCCATCTATACCTCTAAGTCCTGCCCAAGCCAGTACCAGGCCAAGG-CCTCAAACATCCATCCAGCTGTGG---CCTCCTGCTGCAGGTGAGGAGTGGGCAGCCGGGAGGGCAGTGGCACCTGCTCTGTTCTCATCCCTGTCTCTCTGTGTCTCGGGCTCATTAGGGCTTGTCCAGGTGGGGTGAGTTAGGAATCACATGTGGAGTGCTGAGGGCCTAGATGATCACAGCCTCAGAGGGAGCAAATAGTAAAAGCAGCTTTGATCTGGGAAGGGCTAGAAACTGGAGAGGAATCCGAG------------CCCTAGTCCCCTCCTCTCTGCATCTGTCTCCCCTGTTTCTCCAGCCATCATGAGGACACCAAGGAAAAGACCCACAAGGTTCAGACTGGGGTC-CCTGCCTGTGCAGCACCTTGAAGACACCCTTGTAACAGGGAGGATCCTGAGTGCACACGGCTGTCTCTGTCCACTTTGCAGCTCCCCATGTGCCTCCTCTGGGAGCTGTCTCCAGGGTGTTGTGTCCTCTGGGTCACTCAAGTCCATGTTTTTTCCAAGTTCCCACCACATGGCCTTGCCTCCCTGAGTTCCCTTGCACATAAAATGAACGAGTAGATAAGCAGATGTCTCTGGGCCATTTGGGGAGCGGGGCTCAAGCCCTTGTCAGGGCAGATGTGGTCCCTG-TTTCATCCTACCTCTAGGTGTTCCCTTGTCCAGGCCCTGAAGGACGCAGTCCCTCGGGAACACT-TGCTCAGGGCCCACGTTTT---GGCTTTGTTCTCTGCTCTGTGGCCTCACCTTGCCCTCCCGGAGCCAATTCCCCTTTCTCTAGGTGGTCACTTCCTTGGAAACTTGGAGGAGGAGATGGTCAGGATGATTT-CCCCACAG---------TGAGGGGAAAGTGAAAGAG-AAATAGGAAGTTTTGTGTTTCTGCAAAGACAGAGGCAGTGCAGGGGACAGTGAAAAAC-------CCAGGAGACT-GAGTCTTTCTGTAATTTCCCAACTTCACTGTGCCTGGCA--GGGGGTGGTGGTTTCTCATCATTGAACCAAATTGCACTGTC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1137117 1584 -   1771730 CCCAATGGGAATGGGACCTACCAGACCTGGACGGCCACCAAGATTCCCCGAGGAGAGGAGCAGAGGGTCATCTGCTATGTGGGACACAGCTGGCATCACAACACTCACCCT-GTGCCCTCTGATGAGCCTGGGGCGGCCCTCAGGGGTTCCGATCTAAAAAGGGTCAGGCCAGGGTGGGCACAGCAGACATAACTGGAGATCTGGGTGCCCAGTGTGTAATAGAGCC----TTTTTTGTTATTGTTCAGGGAAAGCCTTGGTGCTTCAGAGTCTGTGGCAGCTGTTCCGTATGTTGCTGT---CGCTGCTGCTGCAGCTTTGGCTGTCATTATTATTATTCTCTGTGTCCTTTGGTGCAAGAAAAAACTATCAGCTACAGAGGACCCAGGTGAGAAACGGGGGCAATGGCTGGAGATGGGAGGGCTCCTGTCTGGGCACTAGGGTCCCCTCACTGCTCCTGCACAGATAGGCATGTAGGTGACAAGGCTTCTGGAACAGGGGTTGGAAGCTGCCATATTTGGGAGGGGAACAGGAGGCACATCTCCATCTACACCCCTAAGTCCTGCCCAAGCCAGTGCCAGGCCAAGGTCCTCAAA----CATCCAGCTGTGGCCTCCTCCTGCTGCAGGTGAAGAGTGGGCAGCAGGGAGGGCAGTGGCACCTGCTCTGTTCTCATCCCCGTCTC------TCTCGGGCTCACTAAGGTGCGTCCAGGTGGGGTGAGTTAGGAATCACATGTGGAGTGCTGAGGGCCTGGATGATCACAGCCTCAGAGGGAGCAAATAGGAAAAGCAGCTGTGATCTGGAGAGGGCTAGAAACTGGAGAGGAATCCAAGGGGAGGCGGTGCCCCTAGTCCCTTCCTCTCTGCATTCGTCTCCCCTGTTTCTCCAGCCATCATGAGGACACCAAGAAAAAGACCCACAAGGCCCAGAATGGGGGC-CCTGCCTGTACAGCACCTTGGAGACCCCCTTATAACAGGGAGGATCCTGAGTGCACACGGCTGCCTCTGTCCACTTTGCAGCTCCCCATGTGCCTCCTCTGGCAGCTGTCTCTGGGGTGTCGTGTCTTCTGGGTCACACGAGGCCATGTTTTCTCTGAGTTCCCACCACATGGCCTTGCCTCCCTGAGTTCCCTTGCACATAAAATGGATGAGTAGATAAGCAGATGTCTCTGGGCCACTTGGGGAGTGGGGCCCAGCCCCTTGTCAGGGCAGATGTCGTCCCTG-TTTCATCCTACCTCTAGGTGTTTCCTTGTCCAGGCCCTGAAGGACACAGTCCCTCGGGGACACCGTGCTCAGGGCCCACATTTT--GGGCTTTGTTCTCTGCTCTGTGGCCTCACCTTGCCCTTCCTGAGCCAATTGCCCTTTCTCAAGGTGGTCACTTCCTTGGAAACTTGGAGGAGGGGATGGTCAGGATGATTC-CCCCACAG---------TGAGGGAAAAGTGAAAGAGAAAACAGGAAATTTTGTGTTTCTGCAAAGACAGAGGCAGTGCAGGGGACAGTGAAAGAC-------CCAGGAGACT-GAGTCTTTCTGTCATTTCCTCATTTCTCTGTGCCTGGCA--GGGGGTGGTGGTTTCTCATCATTGAACCAAATTGCACTGTC
i cebCap1.NW_016107755v1   I 20 C 0
s aotNan1.NW_018496901v1      324686 1595 -    486031 CCCAATGGGAATGGGACCTACCAGATCTGGACAGCCACCAAGATTCCCTGAGGAGAGGAGCAGAGGGTCATCTGCTATGTGGGACACAGCAGGCATCACAACACTCACCCT-GTGCCCTCTGATGAGCCTGGGGCCACCCTCAAGGGTTCTGATCTAAAAAGGGTCAGACCAGGGTGGGCACAGCAGAGATAACTGGAGCTCTGGGTGCCCCGTGTGCAACAGGGCCTCTTTTTTTTTTTTTTTTCCAGGGAAAGCCCTGGTGCTTCAGAGTCTCTAGCAGCCATTCTGTATGTTGCTGTTGCTGCTGCCACTGCAGCTTTGGCTGTCATTATTATTATTCTCTGTGTCCTTTGGTGCAAGAAAAAACTATCAGCTACAGAGGACCCAGGTGAAAAATGGGGGCAATGGCTAGAGATGGGAAGGAGCCTGTCTGGGCAGTAGGGTCCCCTCATTGCTCCTGCACAGAAAGACATGTAGGTGACAAGGCTTCTGGAACAGGGGTTGGAAGCTGCCGTATTTGAGAGGGGAACAGGAGCCACATCTCCGTCTACACCCCTAAGTCCTGCCCAAGCCAGTGCCAGGCCGAGGCCCTCAAA----CATCCAGCTGCAGCCTCCTCCTGCTGCAGGTGAGGAGTGGCCAGCA--GAGGGCAGTGGCACCTGCTCTGTTCTCATCCCCGTCTCTCTGTGTCTCAGGCTCACTAGGGCGCATCCAGGTCAGGTGAGTTAGGAATCACATGTGGAGTGATGAGGGCCTAGATGATCACAGCCCCAGAGGGAGCAAATAGTAAAAGTAGCTGTGATCTGGGGAGGACTAGAAACTGCAGAGGAATCTGAGGGGAGGCGGTGCCCCTAGTCCCTTCCTCTCTGCATCCATCTCCCCTGTTTCTCCAGCCATGATGAGGACACCAATAAAAAGACCCACAAGGCCCAGAATGAGGGC-CCTGCCTGTGCAGCACCTTGGAGACTCCCTTGTAACAGGGAGGATCCTGAGCGCACACGGCTGTCTCTGTCCACTTTGCAGCTCCCCATGTGCCTCCTCTGGGAGCTGTCTCCGGGGTGTCGTGTCCTCTGGGTCACTTGAGGCCATGTTTTTTCCGAGTTCCCACCACATGGCCTTGCCTCCCTGAGTTCCTTTGCACATAAAATGGATGAGTAGATAAGCAGATGTCTCTGGGCCATTTGGGGAGCGGGGCCCAGCCCCTTGTCAGGGCAGGTGTGGTCTCTG-TTTCATCCTACCTCTAGGTGTTTCCTTGTCCAGGCCCTGAAGGACGCAGTCCCTCAGGGACACCGTGCTCAGGGCCCATGTTTT--GGGCTTTGTTCGGTGCTCTGTGTCCTCACCTTGCCCTCCCGGAGCCAATTCCCCTTTCTCAAGGTGGCCACTTCCTTGGAAACTTGGAGGAGGGGATGGTCAGGATGATTT-CCCCACAG---------TGAGGGGAAAGTGAAAGAGAAAACAGGAAGTTTTGTGTTTCTGCAAAAACAGAGGCAGTGCAGGGGACAGTGAAAGAC-------CCAGGAGACT-GAGTCTTTCTGTCATTTCCCCACTTCTCTGTGCCTGGCA--GGGGGTGGTGGTTTCTCATCATTGAACCAAATTGCACTGTC
i aotNan1.NW_018496901v1   I 20 I 14
e otoGar3.GL873550          18203763    0 -  18854210 I
e colAng1.NW_012115577v1      561267    4 -   1829203 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4             140702646    0 + 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820    5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=15319.000000
s hg38.chr6_GL000254v2_alt   1761896 79 +   4827813 TGTTGGCCCCTCAGTCCTGGGCAGATGGGAAGGTTCATCCCCTGCCCTGCAGCAAGAGGGCCCCGTCCAGGAGGCACCC
s panTro5.chr6              30608096 79 + 175400573 TGTTGGCCCCTCAGTCCTGGGCAGATGGGAAGGTTCATCCCCTGCCCTGCAGCAAGAGGGCCCCATCCAGGAGGCACCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31032124 79 + 173848474 TGTTGGCCCCTCAGTCCTGGGCAGATGGGAAGGTTCATCCCCTGCCCTGCAGCAAGAGGGCCCCGTCCAGGAGGCACCC
i panPan2.chr6             C 0 C 0
s calJac3.chr4              30713220 14 + 171630274 AGTCAGCCCCTCAG-----------------------------------------------------------------
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1138701 14 -   1771730 AGTCAGCCCCTCAG-----------------------------------------------------------------
i cebCap1.NW_016107755v1   C 0 C 0
e otoGar3.GL873550          18203763  0 -  18854210 I
e aotNan1.NW_018496901v1      326281 14 -    486031 I
e colAng1.NW_012115577v1      561267  4 -   1829203 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4             140702646  0 + 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820  5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=251936.000000
s hg38.chr6_GL000254v2_alt   1761975 211 +   4827813 ACAGCAGGGGCAGTGCAGGTTTGTGGTCGCTCCTGCTTTCACCTGCACTGTCTCCTATAGAGGGGTTGTCACTTCTGGGTCCCCGTGGGCAGGAAAGTTTGCCTTGTAGGTCAC-GGGGCATTGGCCAGGGAAAGGGTGTGAAAGTCATGTGCTAATTTCTCAAAAATTCTCCTTTAAATATTGATGTCCAATAAAGATGTTCACAATTTCC
s panTro5.chr6              30608175 211 + 175400573 ACAGCAGGGGCAGTGCAGGTTTGTGGTCGCTCCTGCTTTCACCTGCACTGTCTCCTATAGAGGGGTTGTCACTTCTGGGTACCCGTGGGCAGGAAAGTTTGCCTTGTAGGTCAC-GGGGCATTGGCCAGGGAAAGGGTGTGAAAGTCATGTGCTAATTTCTCAAAAATTCTCCTTTAAATGTTGATGTCCAATAAAGATGTTCACAATTTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31032203 211 + 173848474 ACAGCAGGGGCAGTGCAGGTTTGTGGTCGCTCCTGCTTTCACCTGCACTGTCTCCTATAGAGGGGTTGTCACTTCTGGGTACCCGTGGGCAGGAAAGTTTGCCTTGTAGGTCAC-GGGGCATTGGCCAGGGAAAGGGTGTGAAAGTCATGTGCTAATTTCTCAAAAATTCTCCTTTAAATGTTGATGTCCAATAAAGATGTTCACAATTTGC
i panPan2.chr6             C 0 C 0
s calJac3.chr4              30713234 212 + 171630274 ACAGCAGGGGCAGTGCAGGTCTGTGGTCGCTCCTGCTCTCACCTGCGGTGTCTCTTATAGAGAAATTGTCAGTTCTAGTTCCCTGTGAACAGGAAAATTTTCCTTGTAGGTCACTGAGGCATTGGCCAGGAAAAGGGTGTAAAAGTCATGTACTAATTTCTTTAAAATTCTGCTTTAAATGTTGATGTCCAGTGAAGATGTTCACAATTTCT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1138715 212 -   1771730 ACAGCAGGGGCAGTGCAGGTCTGTGGTCGCTCCTGCTCTCATCTGCGGAGTCTCCTGTAGAGAAATTGTCTGTTCTAGTTCCCTGTGGACAGGAAAATTTGCCTTGTAGGTCACTGGGGCATTGGCCAGGAAAAGGGTGTAAAAGTCACGTACTAATTTCTTTAAAATTCTGCTTTAAATGTTGATGTCCAGTGAAGATGTTCACAATTTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      326295 212 -    486031 ACAGCAGGGCCAGTGCAGGTCTGTGGTCGCTCCTGCTCTCACCTGCGGTGTCTCCTATAGAGAAATTGTCAGTTCTAGTTCCCTGTGGACAGGAAAATTTGCCTTGTAGGTCACTGGGACATCAGCCAGGAAAAGGGTGTAAAAATCATGTACTAATTTCTTTAAAATTCTGCTTTAAATGTTGCTGTCCAGTGAAGATGTTTACAATTTCT
i aotNan1.NW_018496901v1   I 14 I 316
e otoGar3.GL873550          18203763   0 -  18854210 I
e colAng1.NW_012115577v1      561267   4 -   1829203 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4             140702646   0 + 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=1055427.000000
s hg38.chr6_GL000254v2_alt   1762186 903 +   4827813 GCTGGAT-AATCTTAATAGGATTTCCTCTAATATTGATGTTGTAAAGCATGTACAATCAAATGAGAAGTCAAGCTTGGAGCTTCCTCTCCAGGAGGGTCCATGTTGGAGATGGTGGTTGTGGCAGTGGCAATCCTGGAGTGCAGAGGGTGGGTGGAGGCAGCCTCAGGCTGAGGGGTCTCCAGAAACCCCCTGCTCCACAGGGAGAAGAAGAAGATTCCCTGTGGGCTGTGAGGGCAGTGGCCTGGGTGGAAGCCCTGCTAGGAACAGGGCAGGAAGGTCTTGCAGCCTCAGCAAGCAGCAGCCCTGGGGTAGAGGTGCATTTCCAGGGGTGAGTGGACCAGGCAGGAGCAAGGATGGCCCAAGTGCAGGTCACGGACCCGGGTGGGTGCTGAGGGTCTGGAAAGGTTGGGTGTCCTCAAGCGTGGAGGGTCCCAGGATCCAGTCAGGTGCAGACCCGGTGGCAGCCACGTGTTTTTGTGCCGAGCCCCCAGGCTTCTTGATGGGCTCTGCAGTTAGGGGCTGGCTGCTCAGGGCTCGGAGGGTGGAACGCTGAGC----TGCAGGTGGAGCGGGGAG---CC--CAGTGTGCAGGGTCTGCCCTGTTGTGCAAGTGCCTCTGTAGGTGAGGAGGGCCTGGGGACTGAGAGGGAGAAGGACCGCGTGCGTGACCCAGCCCAGGCCTGGTAGGACACGGAGC---------------TCGGACCA-TCCTCTCTTTGGGGAGGTTTCCCACTGTGTCTAGGCTGGTGGGGCTTGGGAGGAGGGGAGGGCCCCGGGTTCCCTCCTGGATCTGATTCTTGTCCTTTAGTCATGAGGCCCTTTCATTCCCCACATGGTGGATGGTGGGCACAGGGCAGGTATCATTGTTGAGGGAATCACAGGAGGAGACTGGTGGAGGCTGGAGAAACTAGG
s panTro5.chr6              30608386 904 + 175400573 ACTGGAT-AATCTTAATAGGATTTCCTCTAATATTGATGTTGTAAAGCATGTACAATCAAATGAGAAGTCAAACTTGGAGCTTCCTCTCCAGGAGGGTCCATGTTGGAGATGGTGGTTGTGGCAGTGGCAATCCTGGAGTGCAGAGGGTGGGTGGAGGCAGCCTCAGGCTGAGGGGTCTCCAGAAACCCCCTGCTCCACAGGGAGAAGAAGAAGATTCCCTGTGGGCTGTGAGGGCAGTGGCCTGGGTGGAAGCCCTGCTAGGAACAGGGCAGGAAGGTCTTGCAGCCTCAGCAAGCAGCAGCCCTGGGGTGGAGGTGCATTTCCAGGGGTGAGTGGACCAGGCAGGAGCAAGGATGGCCCAAGTGCAGGTCACGGACCTGGGTGGGTGCTGAGGGTCTGGAAAGGTTGGGTGTCCTCAAGCGTGGAGGGTCCCAGGATCCAGTCAGGTGCAGACCCGGTGGCAGCCACGTGTTTTTGTGCCGAGCCCCCGGGCTTCTTGATGGGCTCTGCAGTTAGGGGCTGGCTGCTCAGGGCTCGGAGGGTGGAACGCTGAGC----TGCAGGTGGAGCGGGGAG---CC--CAGTGTGCAGGGTCTGCCCTGTTGTGCAAGTGCCTCTGTAGGTGAGGAGGGCCTGGGGACTGAGAGGGAGAAGGACCGCGTGTGTGACCCAGCCCAGGCCTGGTAGGACACGGAGC---------------TAGGACCAGTCCTCTCTTTGGGGAGGTTTCCCACTGTGTCTAGGCTGGTGGGGCTTGGGAGGAGGGGAGGGCCCCAGGTTCCCTCCTGGATCTGATTCTTGTCCTTTAGTCATGAGGCCCTTTCATTCCCCACATGGTGGATGGTGGGCACAGGGCAGGTATCATTGTTGAGGGAATCACAGGAGGAGACTGGTGGAGGCTGGAGAAACTAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31032414 904 + 173848474 GCTGGAT-AATCTTAATAGGATTTCCTCTAATATTGATGTTGTAAAGCATGTACAATCAAATGAGAAGTCAAACTTGGAGCTTCCTCTCCAGGAGGGTCCATGTTGGAGATGGTGGTTGTGGCAGTGGCAATCCTGGAGTGCAGAGGGTGGGTGGAGGCAGCCTCAGGCTGAGGGGTCTCCAGAAACCCCCTGCTCCACAGGGAGAAGAAGAAGATTCCCTGTGGGCTGTGAGGGCAGTGGCCTGGGTGGAAGCCCTGCTAGGAACAGGGCAGGAAGGTCTTGCAGCCTCAGCAAGCAGCAGCCCTGGGGTGGAGGTGCATTTCCAGGGGTGAGTGGACCAGGCAGGAGCAAGGATGGCCCAAGTGCAGGTCACGGACCTGGGTGTGTGCTGAGGGTCTGGAAAGGTTGGGTGTCCTCAAGCGTGGAGGGTCCCAGGATCCAGTCAGGTGCAGACCCGGTGGCAGCCACGTGTTTTTGTGCCGAGCCCCCGGGCTTCTTGATGGGCTCTGCAGTTAGGGGCTGGCTGCTCAGGGCTCGGAGGGTGGAACGCTGAGC----TGCAGGTGGAGCGGGGAG---CC--CAGTGTGCAGGGTCTTCCCTGTTGTGCAAGTGCCTCTGTAGGTGAGGAGGGCCTGGGGACTGAGAGGGAGAAGCACCGCGTGTGTGACCCAGCCCAGGCCTGGTAGGACACGGAGC---------------TAGGACCAGTCCTCTCTTTGGGGAGGTTTCCCACTGTGTCTAGGCTGGTGGGGCTTGGGAGGAGGGGAGGGCCCCAGGTTCCCTCCTGGATCTGATTCTTGTCCTTTAGTCATGAGGCCCTTTCATTCCCCACATGGTGGATGGTGGGCACAGGGCAGGTATCATTGTTGAGGGAATCACAGGAGGAGACTGGTGGAGGCTGGAGAAACTAGG
i panPan2.chr6             C 0 C 0
s calJac3.chr4              30713446 897 + 171630274 GCTGGATAAACCTTAATAGGAGTTCCTCTAATACTGATGTTATAAAGCCTATTAAATGAAATGGGAAGTCAAACTTCAAGCTCCCTCTCCAGGAGGGTCCATTTTGGAGATGGTGGCTGTGGCAGTGGCAATCCCGGAGTGCGGAGGGTGGGTGGAGGCAGGCTCAGGCTGAGGGGTCTCCAGAAACCCCCTACTCCACAGCA---AGAAAAAGATTCCCTGTGGGCTGCGAGGGCAGTGACGTGAGTGGAAGCCCTGGTAGGAAGAGGGCAGGAAGACCTTGCAGTCTCACCAAGCAGCAGCCCTGTGGAGGAGCTGCGTTTCCAGGGCC-AGTGGACCAGGCAGGAGCAAGGGTGACCTAAGTGCAGGCCATGGGCCTGGGTGGGTGCTGAGGGTCTGGAGAGGCTGGGTGTCCCCAAGCATGGAGGGTCCCAGGGTCCAGTCAGGTGCAGTCCCGGTGGCAGCTACGTGTTTTTGTGCTTAGCCCCCAGGCTTCCTGATGGGCTCTGCAGGTAGGAGCTGTCTTCTCAGGGCTGGGAGGGTGGAACACTGAGCTGCATGCAGGTGAAGCGGGGAACCTCCTGCCATGTGCATTGTCCACCCAG-TGTGCAGATGCTTCTGTAGGTGAGGAGGGCCTGGGGCCTGAGGGAGAG-ATGACCGTGTGTGTGACCCTCCCCAGGCCTGGTAGGACACGGAGC---------------TAGGGCCAGTCCTCTCTTTGGGAAGGTCTCCCACTGTGTCGAGG-TGATGGGGCTTGAGAGGAGGGGAGGGCCCTATGTTCCTGCCCGGGTCTGGGTCTTATCCTTTAGTCATGAG----------TCTCCACATGGCGGGTGGTGGACATATGGCAGGTACCAACGTTGAGGGAATCACAGGAGGAGACTGATGGGGGCTGCAGAAAGTAGG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1138927 911 -   1771730 GCTGGAT-AATCTTAATAGGAGTTCCTCTAATGCTGATGTTGTAAAGCCTATTAAATGAAATGGGAAGTCAAACTTGGAGCTTCCTCTCCAGGAGGGTCCATTTTGGAGATGGTGGCTGTGGCGGTGGCAATCCCGGAGTGCAGAGGGTAGGTGGAGGCAGCCTCAGGCTGAGGAGTCTCGAGAAATTCCCTACTCCACAGCG---AGAAGGAGATTCCCTGTGGGCTGCGAGGGCAGTGACGTGAGTGGAAGCCCTGGTAGGGACAGGGCAGGAAAGCCTCGCAGCCTCACC-AGCAGCAGCCCTGGGGAGGAGCTGCATTTCCAGGGCCGAGTGGACCAGGCAGGAGCACGGGTGGCCCAAGTGCAGGCCATGGGCCTGGGTGGGTGCTGAGGATCTGGAGAGGCTGGGCGTCACCCAGCATGGAGGGTCCCAGGGTCCAGTCAGGTGCGGTCCTGGTGGCAGCCACGTGTTTTTGTGCTTGGCCCCCAGGCTTCCTGATGGGCTCTGCAGGTAGGAGCTGCCTCCTCGGGGCTGGGAGGGTAGAACACTGAGC----TGCAGGTGAAGCGGGGAG---CCTGCCATGTGCAGGGCCCACCTGG-TGTGCAGGTGCCTCTGTAGGTGAGGAAGGCCTGGGGCCTGAGGGAGAGAAGGACCGTGTGTGTGACCCTCCCCAGGCCTGGTAGGACACGGAGCTAGGGCCAGTCCTCTTAGGGCCAGTCCTCTCTTTGGGAAGGTCTCCCACTGTGCCGAGG-TGATGGGGCTTGAGAGGAGGGGAGGGCCCTGGGTTCCCTCCTGGGTCTGGGTCTTATCCTTTAGTCATGAGGCCCTCTTA-TTCCCACATGGCGGGTGGTGGACACAGGGCAGGCACCAACCTTGAGGGAATCACAGGAGGAGCCTGGTGGGGGCTGCAGAA---AGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      326823 915 -    486031 GCTGGAT-AATCTTAATAGGAGTTCCTCTAATACTGATGTTATAAAGCCTATTAAATGAAATGGGAAGTCAAACTTGGAAGTCAAACTCCAGGAGGGTCCATCTTGGAGATGATGGCTGTGACAGTGGCAATCCTGGAGCGCAGAGGGTGGGTGGAGGCAGCCTCAGACTGAGGGGTCTCCAGAAACCCCCTACTCCACAGCG---AGAAGAAGATTCCCTGTGGGCTGCGAGGGCAGTGAGGTGAGTGGAAGCCCTGGTAGGAACAGGGCAGGAAGGCCTTGCAGCCTCACCAAGCAGCAGCCCTGGGGAGGAGCTGCGTTTCCAGGGCCGAGTGGACCAGGCAGGAGCAAGGGTGGCCCAAGTGCAGGCCATGAGCCTGGGTGGGTGCCGAGGGTCTGGAGAGACTGGGTGTCACCAAGCATGGAGGGTCCCAGGGTCCAGTCAGGTGCAGTCCCGGTGGCAGCCACGTGTTTTTGTGCTTAACCCCCAGGCTTCCTGTTGGGCTCTGCAGGTAGGAGCTGCCTCCTCAGGGCTGGGAGGGTGGAACACTGAAC----TGCAGGTGAAGCGGGGAG---CCTGCTGTGTGTAGGGTCCATCCGG-TGTACAGATGCCTCTGTAGGTGAGGAGGGCCTGGGGACTGAGGGAGAGATGGACTGTGTGTGTGACCCTCCCCAGGCCTGGTAGGACATGGAGCTAGGGCCAGTCCTCTTAGGGCCAGTCCTCTCTTTGGGAAGGTCTCCCACTGTGTCGAGG-TGATGGGACTTAAGAGGAGGGGAGGGCCGTGGGTTCCCTCTCGGATCTGGGTCTTATCCTTTAGTCATGAGTCCCTTTTA-TCCCCAAATGGCGGGTGGTGGACACAGGGCAGGTACCAACATTGAGGGAATCACAGGAGGAGACTGGTGGGGGCCGCAGAAAGTAGG
i aotNan1.NW_018496901v1   I 316 C 0
e otoGar3.GL873550          18203763   0 -  18854210 I
e colAng1.NW_012115577v1      561267   4 -   1829203 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4             140702646   0 + 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=864323.000000
s hg38.chr6_GL000254v2_alt   1763089 565 +   4827813 ATGGGAGGGAGGAAAAAGTGGGGGCGTCAGTTCTTCCCTCAGAGAAAGGGTGAATCTGATTTCGGAGTTTCTGAGGAGGGAGAAATCCTCAGGGAATGAAAAGCAGCACTCTGCACCCAGTGGAGCATTTACT-GTTTCTCTCTTTTCTCCAGAGCACATGAGCCTACGAAGCCCAGATCAACACCTGGTTGGGACAGGAGACCACCAGGGCA------------------CCATACAGCTGGAATTTCAGTCTCTGGTGCCAGCTCCTGGGTCTGCTGGCTCCACT--------------------------------GGATTCAACTCCCTACCCAGGTCTCACCAGCactttccctcttgatgcctcagtttcctcatatattaaatggg--aaactaacagcacttatttcTTGTGGTC-AGGGATTGACAACTGTTAGTTGCTATGAGGTGTTTGCAGCTGTGCCATAATATTCGGtattattatttttgttgttttgttattatcttattaacttttattatCTTTTAATGTATTGTATGTGCAGTAATTACATGCACAAAAGCACATATGTGCCTTTAAACACATTG----------TATGTGCATAAAAGCTTTATGAGTG
s panTro5.chr6              30609290 567 + 175400573 ATGGGAGGGAGGAAAAAGTGGGGGCGTCAGTTCTTCCCTCAGAGAAAGGGTGAATCTGATTTGGGAGTGACTGAGGAGGGAGAAATCCTCAGGGAATGAAAAGCAGCACTCTGCACCCAGGGGAGCATTTACT-GTTTCTCTCTTTTCTCCAGAGCACATGAGCCTACAAAGCCCGGATCAACACCTGGTTGGGACAGGAGACCACCAGGGCA------------------CCATACAGCTGGGATTTCAGTCTCTGGTGCCAGCTCCTGGGTCTGCTGGCTCCACT--------------------------------GGATTCAACTCCCTACCCAGGTCTCACCAGCactttccctcttgatgcctcagtttcctcatatattaaatgggggaaactaacagcacttatttcttgtggtc-agggattgaaaactgttagttgctatgaggtgtttgcagctgtgccATAATATTTGGtattattatttttgttgttttgttattatcttattaacttttattatCTTTTAATGTATTGTATGTGCAGTAATTACATGCACAAAAGCACATATGTGCCTTTAAACACATTG----------TATGTGCATAAAAGCTTTATGAGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31033318 567 + 173848474 ATGGGAGGGAGGAAAAAGTGGGAGCATCAGTTCTTCCCTCAGAGAAAGGGTGAATCTGATTTCGGAGTGACTGAGGAGGGAGAAATCCTCAGGGAATGAAAAGCAGCACTCTGCACCCAGTGGAGCATTTACT-GTTTCTCTCTTTTCTCCAGAGCACATGAGCCTACAAATCCCGGATCAACACCTGGTTGGGACAGGAGACCACCAGGGCA------------------CCATACAGCTGGGATTTCAGTCTCTGGTGCCAGCTCCTGGGTCTGCTGGCTCCACT--------------------------------GGATTCAACTCCCTACCCAGGTCTCACCAGCactttccctcttgatgcctcagtttcctcatatattaaatgggggaaactaacagcacttatttcttgtggtc-agggattgaaaactgttagttgctatgaggtgtttgcagctgtgccATAATATTTGGtattattatttttgttgttttgttattatcttattaacttttattatCTTTTAATGTATTGTATGTGCAGTAATTACATGCACAAAAGCACATATGTGCCTTTAAACACATTG----------TATGTGCATAAAAGCTTTATGAGTG
i panPan2.chr6             C 0 C 0
s colAng1.NW_012115577v1      561271 560 -   1829203 ATGGGAGGGAGGAAAAAGTAGGGGTGTCA--TCTTCCCTCAGAGAAAGGATGAATCTGATTTGGGAGTGGCTGAGGAGGGAGAAGTCCTCAGGGAATGAAAAGCAGCGCTGTGCACCCAGTGGAGCATTTACTGGTTTCTCTTTTTTCTCCAGAGCACATGAGCCTACAAAGCCTGGATCAACACCCGGTTGGGACAGAAGACCACCAGGGCA------------------CCGTGCAGCTGGGATTTCAGTCTCTGGTGTCAGCTCTTGGGTCCACTGGCTCCTCT--------------------------------GGATTCAACTCCCTATCTGGGTCTCACCAGCactttccctcttgatgcct--gtttcctcatatattaaatggg-gaaactaagagcacctctttcttgtggtc-agggattgacaagtgttagttgctatgaggtgtttgcagctgtgccAtattatttagtgttattatttttgttgttttatta-------------tcttattatcttttaatatattGTATGTACAGTAATTATGTGCACAAAAGCACATACGTGCCTTTAAACACATTGTATAAAACTTTATGTGCATAAAAACTTTATGAGTG
i colAng1.NW_012115577v1   I 4 C 0
s calJac3.chr4              30714343 577 + 171630274 --ATGAGAGAGGAAAAAGTGGGGGCATCA--TCTTCCCTCAGAAAAAGGGTGAATCTGATTTTGGAGTGGCTGAAGAGGGAGAAGTCCTCAGGGAATAAAAAGCAGCACTCTGCACCCAGTAGAGCGTTTACTGGTTTTTCTCTTTTCTCCAGAGCACATGAGCCTACAAAGCCCAGGTCAGCACTTGA-TGGGACAGGAGAGCACCAGGGCA------------------GTGCACAGCTGGGGTTTCAGTCTGTGCTATTGGCTCCCGGGTCCGCTGGCTCCACTGAGGGTGCCCACactctgcagccaggtggccgggattcaactccctacccaggtctcaccggcactttccctcttggtgcctcagtttcctcttatatgaaatgggggaaactaagatcacttatttcttgtggttggggggatgaaaagtgttagttgctatgaaatgtttgcagctgtgccCTATTAGTTGGTAT---TATTTTTG-TGTTATGTTA---------------TTATTATCTTTTAATGTATTGCATGTGCAGTAATTATATGCACAAAAGCACATATGTGCCTTTAAACACATTG----------TATGTACATAGAAGCTTAATGAGTG
i calJac3.chr4             C 0 I 1
s cebCap1.NW_016107755v1     1139838 583 -   1771730 --ATGAGAGGGGAAAAAGTGGGGGCATCA--TCCTCCCTCAGAGAATGGGTGAATCTGATTTTGGAGTGGCTGAAGAGGGAGAAGTCCTCAGGTAATAAAAA-CAGAACTCTGTACCCACTGGAGCATTTACTGGTTTTTCTCTTTTTTCCAGAGCACATGAGCCTACAAAGCCCAGGTCAGCACTTGG-TGGGATAGGAGAGCACCAGGGCA------------------CAGCATAGCCGGGGTTTCAGTCTCTGCTGTCGGCTCCCGGGTCCGCTGGCTCCACTGAGGGCGCCCACactctgcagccgggcggccgggattcaactccctacccaggtctcaccagcactttccctcttggtgcctcagtttcctcatatattaaatgggagaaactaagatcacatatttcttgtcatt-gggggatgaaaagtgttagttgctatgaaatgtttgcagctgtgccCtattagttggtgttagtatttttgttgttttgttatta----------tcttattatattttaatg-attGTATGTGCAGTAATTATATGCACAAAAGCACATATGTGCCTGTAAACACATTG----------TATGTACATAAAAGCTTAATGAGTG
i cebCap1.NW_016107755v1   C 0 I 13
s aotNan1.NW_018496901v1      327738 595 -    486031 --ATGAGAGAGGAAAAAGTGGGGGCATCA--TCTTCCCTCAGAGAAAGGGTGAATCTGATTTTGGAGTGGCTGAAGAGGGAGAAGACCTCAGGGAATAAAAAGCAGCACTCTGCACCCAGTGGAGCATTTACTGGTTTTTCTCTTTTCTCCAGAGCACATGAGCCTACAAAGCCCAGGTCAGCACTTGG-TGGGACAGGAGAGCACCAGAGCATGGCACAGCTGGGGTTTCAGGCACAGCTGGGGTTTCAGGCTCTGCTGTCGGCTTCCGGGTCTGCTGGCTCCACTGAGGGCGCCGACACTCTGCAACCAGGTGGCTGGGATTCAA-TCCCTACCCAGGTCTCACCAGcacgttccctcttggtgcctcagtttcctcatctattaaatgggggaaactaagatcaattatttcttgtcgtt-gggggatgaaaagtgttagttgctatgaaatgtttgcagctgtgccCTATTAGTTGGTACTATTATTTTTGTTGTTCTGTTATTA----------TCTTATTATCTTTTAATGTATTGCATGTGCAGTAATTATATGCAC-AAAGCACATATGTGCCTTTAAACACATTG----------TATGTACATAAAAGCTTTA------
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550          18203763   0 -  18854210 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4             140702646   0 + 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=3718.000000
s hg38.chr6_GL000254v2_alt   1763654 5 +   4827813 TGTGT
s panTro5.chr6              30609857 5 + 175400573 TGTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31033885 5 + 173848474 TGTGT
i panPan2.chr6             C 0 C 0
s colAng1.NW_012115577v1      561831 5 -   1829203 TGTGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30714921 5 + 171630274 TGTAC
i calJac3.chr4             I 1 I 7
e otoGar3.GL873550          18203763 0 -  18854210 I
e aotNan1.NW_018496901v1      328333 0 -    486031 C
e cebCap1.NW_016107755v1     1140421 13 -   1771730 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4             140702646 0 + 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820 5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=1123269.000000
s hg38.chr6_GL000254v2_alt   1763659 681 +   4827813 CCTGTTGACGGTTCCTCCTGGCAAGCCTGGGACCAGCCTTTTTGGCACCTTGAGGTCCCCTCACCCTTCGCACACTGTTATAAATTACCCCATGTCTACTATGTCTGCATAATTTTATACTGTGGATTTTTACTCTTTAAATAGACATTTCTGGCCTGTGCTTTATTTCATGCATCTGGGAAGAGTAGAATACAAGGTTCAGGGGAAAAGGAGAGGTCTGTCTCAATGCCTTGACACAGCATGAAGAAATCTCTCCCTCTTCCTACCTCTCCCTGCCAGTTCCCAGTGATTGACAGATTCACAGCAAAACAGAAAAGGAAAGGTT--GGGGGTGGGGGTGCACATCTGGGGCCAAAATTCAGGGGCTGACTCTGGGGGAACATCTGCCCTGAAGAGTTGGATCCTTCATGTGATGATGTTGAGCTGAAGTGTAATATCAGAGATGGGGGCAGAGAGGGCTTTGAGTTTCCCTGGTATTGAAGAATAGGAGTCAGACTGCTTCTGGGGTGAAGCGACTGCTGGGAACATGTGAACCAAATTGATGAAGAATAAGTGAATGGGGAATGTGGGTGAGTAAAGCAAGCATCAGCAGTCAGTTTCTGCCATCAGTTCAGGCTGATCGGGGTAGGGAGGTGGGGAGATGGATATTCCCCACCCTGTTGCTCAATCCTTCCTGACtgctg
s panTro5.chr6              30609862 681 + 175400573 CCTGGTGACGGCTCCTCCTGGCAAGCCTGGGACCAGCCTTTTTGGCACCTTGAGGTCCCCTCACCCTTCTCACACTGTTATAAATTACCCCATGTCTACTATGTCTGCATAATTTTATACTGTGGATTTTTATTCTTTAAATAGACATTTCTGGCCTGTGCTTTATTTCATGCATCTGGGAAGAGTAGAATACAAGGTTCAGGGGAAAAGGAGAGGTCTGTCTCAATGCCTTGACACAGCATGAAGAAATCTTTCCCTCTTCCTACCTCTTCCTGCCAGTTCCCAGTGATTGACAGATTCACAGCAAAACAGAAAAGGAAAGGTT--GGGGGTGGGGGTGCACATCTGGGGCCAAAATTCAGGGGCTGACTCTGGGGGAACATCTGCCCTGAAGAGTTGGATCCTTCATGTGATGATGTTGAGCTGAAGTGTAATATCAGAGATGGGGGCAGAGAGGGCTTTGAGTTTCCCTGGTATTGAAGAATAGGGGTCAGACTGCTTCTGGGGTGAAGCGACTGCTGGGAACATGTGAACCAAATTGATGAAGAATAAGTGAATGGGAAATGTGGGTGAGTAAAGCAAGCATCAGCAGTCAGTTTCTGCCATCAGTTCAGGCTGATCGGGGTAGGGAGGTGGGGAGATGGATATTCCCCACCCTGTTGCTCAATCCTTCCTGACtgcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31033890 681 + 173848474 CCTGGTGACGGCTCCTCCTGGCAAGCCTGGGACCAGCCTTTTTGGCACCTTGAGGTCCCCTCACCCTTCTCACACTGTTATAAATTACCCCATGTCTACTATGTCTGCATAATTTTATACTGTGGATTTTTATTCTTTAAATAGACATTTCTGGCCTGTGCTTTATTTCATGCATCTGGGAAGAGTAGAATACAAGGTTCAGGGGAAAAGGAGAGGTCTGTCTCAATGCCTTGACACAGCATGAAGAAATCTTTCCCTCTTCCTACCTCTTCCTGCCAGTTCCCAGTGATTGACAGATTCACAGCAAAACAGAAAAGGAAAGGTT--GGGGGTGGGGGTGCACATCTGGGGCCAAAATTCAGGGGCTGACTCTGGGGGAACATCTGCCCTGAAGAGTTGGATCCTTCATGTGATGATGTTGAGCTGAAGTGTAATATCAGAGATGGGGGCAGAGAGGGCTTTGAGTTTCCCTGGTATTGAAGAATAGGGGTCAGACTGCTTCTGGGGTGAAGCGACTGCTGGGAACATGTGAACCAAATTGATGAAGAATAAGTGAATGGGAAATGTGGGTGAGTAAAGCAAGCATCAGCAGTCAGTTTCTGCCATCAGTTCAGGCTGATCGGGGTAGGGAGGTGGGGAGATGGATATTCCCCACCCTGTTGCTCAATCCTTCCTGACtgcta
i panPan2.chr6             C 0 C 0
s colAng1.NW_012115577v1      561836 677 -   1829203 CTTGGTGATGGCTCCTTCTGGCAAGCCTGGAACCAGCCTTTTTGGCACCTTGAGGTCCCCTTACACCTGTCACACTGTTATAAATTACCCCATATCTACTAAGTCTGCGTAATTTTATACTGTGAATTTTTACTCTTCAAATAGACATTTCTGGCCTGTGCTTTATTTCATGCATCTGGGAAGAGTAGAGTACAACGTTCAGGGGAAAAGGAGAGGTCTGTCTCAATGCCTTGACACAGCATGAAGAAATCGCTCCCTCTTCCTACCTCTCCCTGCCAGTTCCCAGTGATTGACAGATTCACAGCAAAACAGAAAGGGAAGGGTTGGGGGGGTGGGGGTGCACATCTGGGGCCAACATTCAGGGGCTGACTCTAGGGGAACATCTGCTCTGAAGAGTTGGATCCTTCATGTGATGATGTTGAGCTGAAGTGTAGTATCAGAGGTGGGG--AGAGAGGGCTTTGAGGTTCCCTGGTATCGAAGAATAGGGGTCAGTCTGCTTCTAGGGTGAAGTGACTGCTGGAAACATGCGAACCAAATTGatgaagaataaatgaatgaggaatgtggatgagtaaAGCAAGCATCAG----CAGTTTCTGCCATCAGTTCAGACTGATTGGGGTGGGGAAGTGGGGAGATGGATATTCCCCACCCTGCTGCTCAATCCTTCCTGACtgctg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30714933 660 + 171630274 CTTTATGATGGCTCCTCCTGGCAAGCTGAGGACCAGTCTTTTTGGCACCTTGAGGTTCCCTCATCCCTGTCACACTGTTATGAATTACTCCATGTCTACTTTGTCTGCATACTTTTATACTATGAA-TTTTCTTCTTTAAGTAGACATTTCTGGCCTGTGTTTTATTTCATGCATCTGGGAAGAGTAGAGTACGAGGTTCAAGGGAGAAGGAGAGGTCTGTCTCAATGCCTTGACGCAGCGT---GAAATCTCTCCCTCTTCCTATCTCTCCCTGCCAGTTCCCAGTGATTGACATATTCACAGCAAAACAAAAAGAAAAGAGTT----GGGTGTGGGTGCACCTCTGGGGCCAGCATTCCGGGGCTGACTCTGGGGGAATATCTGCCCTGAATAGTTGGAGCTTTCATACGATGATGCTGAGCTGAAGTGTAATATCAGAGAAGGAG-CAGGGAGGGCTTCGAGCTTCCCTGCTATTGCAGAATAGAGGTCAGCCTGCTTCTGGGGTGAAGTGACTGCT----------GAGCTAAACTGATGAAGAATAAATGAGCAGGGAATGTGGATGAGTAAAGCAAGCATCAG----CAGTTTCTGCCATCATTTCAGGCTGAATGGGGCAGGGAGGTGGGGAGATGGATACTCCTCACTCTATTGCTCAATCCTTCCTGACTGCTG
i calJac3.chr4             I 7 C 0
s cebCap1.NW_016107755v1     1140434 661 -   1771730 CTTTATGATGGCTCCTCCTGGCAAGCTGAGAACCAGCCTTTTCGGCACCTTGAGGTTTCCTCACCCCTGTCACACTGTTATGAATTACTCCATGTCTACTTTGTCTGCATAATTTTACACTATGGATTTTTCCTCTTTAAGTAGACGTTTCTGGCCTGTGTTTTATTTCATGCATCTTGGAAGAGTAGACTATGAGGTTCAAGGGAAAAGGAGACGTCTGTCTCAATGCCTTGACACAGCAT---GAAATCTCTCCCTCTTCCCATCTCTCCCTGCGAGTTCCCAGTGATTGACAGATTCACAGCAAAACAGAAAGAAAAGAGTT----GGGTGTGGGTGCACATCTGGGGCCAGCATTCAGGGGCTGACTCTGGGGGAACATCTGCCCTCAAGAGTTGGAGCCTTCATGTGGTGATGCTGAGCTGAAGTGTAATATCAGAGAAGGGG-CAGGGAGGGCTTCGGAGTTCCCTGGTATTGAAGAATAGGGGTCAGCCTACTTCTGGGGTGAAGTGACTGCT----------GAACCAAACTGATGAAGAATAAATGAACAGGGAATGTGGATGAGTAAAGCAAGCATCAG----CAGTTTCTGCCATCAGTTCAGGCTGATTGGGGCAGGGAGGTGGGGGGATGGATACTCCCCACTCTGTTGCTCAATCCTTGCTGACTGCTG
i cebCap1.NW_016107755v1   I 13 C 0
s aotNan1.NW_018496901v1      328333 656 -    486031 -----TGATGGCTCCTCCTGGCAAGCTGAGGACCATCCTTTTCAGCACCTTGAGGTTCCCTCATCCCTGTCACACTGTTATGAATTACTCTATGTCTACTTTGTCTGCATAATTTTATACTATGGATTGTTCCTCTTTAAGTAGACATTTCTGGCCTGTGTTTTATTTCATGCATCTGGGAAGAGTAGACTATGAGGTTCAAGAGAAAAGGAGAAGTCTGTCTCAATGCCTTGACACAGCAT---GAAATCTCTCCCTCTTCCTATCTCTCCCTGCCAGTTCCCAGTGATTGACACATTCACAGCAAAACAGAAAGAAAAGAGTT----GGGTGTGGGTGCACCTCTGGGGCCAGCATTCAGGGGCTGACTCTGGGGGAACATCTGCCCTGAAAAGTTGGAGGCTTCATGTGATGATGCTGAGCTGAAGTGTAATATCAGAGAAGGGG-CAGGGAGGGCTTCGAGGTTCCCTCGTATTGAAGAATAGAGGTCAGCCTGCTTCTGGGGTGAAGTGACTGCT----------GAACTAAACTGATGAAGAATAAATGAGCAGGGAATGTGGATGAGTAAAGCAAGCATCAA----CAGTTTCTGCCATCAGTTCACGCTGATTGGGGCAGGGAGGTGGGGAGATGGATACTCCCTACTCTGTTGCTCAATCCTTCCTGACTGCTG
i aotNan1.NW_018496901v1   C 0 I 51682
e otoGar3.GL873550          18203763   0 -  18854210 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4             140702646   0 + 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=1500.000000
s hg38.chr6_GL000254v2_alt   1764340 1 +   4827813 g
s panTro5.chr6              30610543 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31034571 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s colAng1.NW_012115577v1      562513 1 -   1829203 g
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30715593 1 + 171630274 G
i calJac3.chr4             C 0 I 37031
s cebCap1.NW_016107755v1     1141095 1 -   1771730 G
i cebCap1.NW_016107755v1   C 0 I 46700
e otoGar3.GL873550          18203763 0 -  18854210 I
e aotNan1.NW_018496901v1      328989 51682 -    486031 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4             140702646 0 + 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820 5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=890945.000000
s hg38.chr6_GL000254v2_alt   1764341 1723 +   4827813 gtgcaccaaaatctcagaaatcaccactaaagaattaattcaggtaaccaaacaccaccca-cccctaaaaaccttgaaataaaaaaTAATTTTTTAAAAAAGTggccgggcacggtggctcacgcctgtaatcccagcacttcgggaggccaaggcgggcagatcatgaggtcaggagttcaagaccagcctgatcaacatggtgaaaccccatctctactaaaacgacaaaaattagctgggcatggtggcacatgtctgtaatcccagctactcaggaggctgaggcaggcgattctcctgaacctgggaggcggagttttcagtgagccgagatcgcaccactgcagtccagcctgggtgacaaagcaagtctccatctcaaaaaaaaaaaaaaaaaaa--------GGAAtgatattggatatccttattttgtccccaacacagaggagtagttttcaatatttttctcattaattttgactttagataga-ggtatttcttttttataaataactttattagcttaaggaagttctcttttatttctggtttattgagtttttataatgaatagttgttgaattttatcaaatgattctcatgcatctgttgacataactgcatgtttttctacctttttctattcatgtggtaaattactctgattttttaaagtcacatttctcttataaatcccattcagtcccattgtacattatcctctccatatattacttgcttctattttctaatattttagatggaattttggtggctgtgttcatcagttcattcagatggtgga-----------tatcttttttgtaatgtcattgtcatgtttaagttcttctctgggctatgttgtctcataaaattagttggaaggtgtttactctttttttattatctaaaagaatatatgatagtctgccctccatgtctgtgtgtttcacatctgtgaatttaactacctgaggatcgaaactgt--tgttgctgctgatgtatactatgtagttaggcctacctacagcggttacatctgtactgaagatatatagactttttcttatcattatttcctaaacaatatagtataacaactatttgcgaataatttacattgaattaggtattagtaatctataggtgatttaaagtatatgggaggatgtgcataggtaataagcaaatactagaccattttatacatgggacctgagcattcatagattttggtatccacagggggccctagatcccatcccaaaaggataccaagagatgactgaataagactgacttttttaaaaaaagttttggaagaattgacaggggaaaaaacgtgggcaaagagtgtttttggtgggaaagaatttaattagaatcccatttcttaatggatataggactacttatattttctattcagttttctgttggcttgttcaattgtcgttttcaagaactcatttcattgcacctaaattttaaaaggtattgtcaggaagttgtgtctaatattctcttattttcattttaataaaatatacggttttatgttgttctttatagtgttcatttctgttttctctctttttatgattgatctttctggggatttTGAAATAGTTTGCCCATCTTTCCCTCTATTTTCCTTAACATATTAATCATAAATACTTTGAGAATGTTCTTGCTTGCCTGCTTCAATATCCACATCAACTCTTAGCCTGAt
s panTro5.chr6              30610544 1731 + 175400573 gtgcaccaaaatctcagaaatcaccactaaagaattaattcaggtaaccaaacaccaccca-cccctaaaaaccttgaaataaaaaaTaatgttttaaaaaagtggccgggcacggtggctcacgcctgtaatcccagcacttcgggaggccaaggcgggcagatcacgaggtcaggagttcaagaccagcctgatcaacatggtgaaaccccatctctactaaaacgacaaaaattagctgggcatggtggcacctgtctgtagtcccagctactcaggaggctgaggcaggagaatcgcctgaacctgggaggcggagttttcagtgagccgagatcgcaccactgcagtccagcctgggtgacaaagcaagtctccatctcaaaaaaaaaaaaaaaaaaaaaaaaaaaggaacgatattggatatccttattttgtccccaacacagaggagtagttttcaatatttttctcattaattttgactttagataga-ggtatttcttttttataaataactttattagcttaaggaagttctcttttatttctggtttattgagtttttataatgaatagttgttgaattttatcaaatgattttcatgcatctgttgacataactgcatgtttttctacctttttctattcatgtggtaaattactctgattttttaaagtcacatttctcttataaatcccattcggtcccattgtacattatcctctccatatattacttgcttctattttctaatattttagatggaattttggtggctgtgttcatcagttcatttagatggtgga-----------tatcttttttgtaatgtcattgtcatgtttaagttcttctctgggctatgttgcctcataaaattagttggaaggtgtttactctttttttattatctaaaagaatatatgatagtctgccctccacgtctgtgtgtttcacatctgtgaatttaactacctgaggatcgaaactgt--tgttgctgctgatgtatactatgtagttaggcctacctacagcggttacatctgtactgaagatatatagactttttcttattattatttcctaaacaatatagtataacaactatttgcgaataatttacattgaattaggtattagtaatctataggtgctttaaagtatatgggaggatgtgcataggtaataagcaaatactagaccattttatacatgggacctgagcattcatagattttggtatccacagggggccctagaacccatcccaaaaggataccaagagatgactgaataagactgactttttaaaaaaaagttttggaagaattgacaggggaaaaaacgtgggcaaagagtgtttttggtaggaaagaatttaattagaatcccatttcttaatggatataggactacttatattttctattcagttttctgttggcttgttcaattgtcgttttcaagaactcatttcattgcacctaaattttaaaaggtattgtcaggaagttgtgtctaatattctcttattttcgttttaataaaatatacggttttatgttgttctttatagtgttcatttctgttttctctctttttatgattgatctttctggggatttTGAAATAGTTTGCCCATCTTTCCCTCTGTTTTCCTTAACATATTAATCATAAATACTTTGAGAATGTTCTTGCTTGCCTGCTTCAATATCCACATCAACTCTTAGCATGAt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31034572 1721 + 173848474 gtgcaccaaaatctcagaaatcaccactaaagaattaattcaggtaaccaaacaccaccca-cccctaaaaaccttgaaataaaaaaTAATGTTTT-AAAAAGTggccgggcacggtggctcacgcctgtaatcccagcacttcgggaggccaaggcgggcagatcacgaggtcaggagttcaagaccagcctgatcaacatggtgaaaccccatctctactaaaacgacaaaaattagctgggcatggtggcacatgtctgtagtcccagctactcaggaggctgaggcaggagaatcgcctgaacctgggaggcggagttttcagtgagccgagatcacaccactgcagtccagcctgggtgacaaagcaagtctccatctcaaaaaaaaaaaaaaaaaaa--------GGAACgatattggatatcctta-tttgtccccaacacagaggagtagtcttcaatatttttctcattaattttgactttagatagagggtatttcttttttataaataactttattagcttaaggaagttctcttttatttctggtttattgagtttttataatgaatagttgttgaattttatcaaatgattttcatgcatctgttgacataactgcatgtttttctacctttttctattcatgtggtaaattactctgattttttaaagtcacatttctcttataaatcccattcggtcccattgtacattatcctctccatatattacttgcttctattttctaatattttagatggaattttggtggctgtgttcatcagttcatttagatggtgga-----------tatcttttttgtaatgtcattgtcatgtttaagttcttctctgggctatgttgcctcataaaattagttggaaggtgtttactctttttttattatctaaaagaatatatgatagtctgccctccacgtctgtgtgtttcacatctgtgaatttaactacctgaggatcgaaactgt--tgttgctgctgatgtatactatgtagttaggcctacctacagcggttacatctgtactgaagatatatagactttttcttattattatttcctaaacaatatagtataacaactatttgcgaataatttacattgaattaggtattagtaatctataggtgctttaaagtatatgggaggatgtgcataggtaataagcaaatactagaccattttatacatgggacctgagcattcatagattttggtatccacagggggccctagaacccatcccaaaaagataccaagagatgactgaataagactgactttttaaaaaaaagttttggaagaattgacaggggaaaaaacgtgggcaaagagtgtttttggtgggaaagaatttaattagaatcccatttcttaatggatataggactacttatattttctattcagttttctgttggcttgttcaattgtcgttttcaagaactcatttcattgcacataaattttaaaaggtattgtcaggaagttgtgtctaatattctcttattttcgttttaataaaatatacggttttatgttgttctttatagtgttcatttctgttttctctctttttatgattgatctttctggggatttTGAAATAGTTTGCCCATCTTTCCCTCTGTTTTCCTTAACATATTAATCATAAATACTTTGAGAATGTTCTTGCTTGCCTGCTTCAATATCCACATCAACTCTTAGCCTGA-
i panPan2.chr6             C 0 C 0
s colAng1.NW_012115577v1      562514 1727 -   1829203 gtacaccaaaatctcagaaatcaccactaaagaattaattcaggtaaccaaacaccacctgccccctaaaaaccttgaaataaaaaaTATTTTTTAAAAAAAGTggccaggcacgatggctcacgcctgtaatccaggcactttgggaggccgaggcgggcagatcacgaggtcaggagttcaagaccagcctgatcaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggtacatgtctgtaatcccagctactcaggaggctgaagcagcagaattgcttgaacctgggaggcggagttttcagtgagccaaaatcgcaccactgcgttccagcctagatgacaaagcaagactctatctcaaaaaaaaaaaaaaaaa----------GGAAtgatattggacatccttattttgtccccaacacagtgg---agttttcaatatttttctcattaattttgactttagataga-ggtattccttttttataaataattttattagcttaaggaagttttcttttatttctggtttactaagtttttataatgaatggttgtttaactttatcaaatgattttcatgcatctgttgacataactgaatgtttttctatctttttctattc-tgtggtaaattactctgattttttaaagtcacgtttctcttataaattccattcagtcccattgtgcattatcctctccatgtattacttgtttctatttactaatattttagatggaattttggtggctgtgttcatcagatcatttagatggtgggtttttttttttttttttttttgtaatgtcattgtcatgtttaagttcttctctgggctatgttgccttataaaattagttggaaggtgttgactctttttttattatctaaaagaatatatgacagtctgccctccatgtctgtgtgtttcatatctgtgaatgtaactgcctgaggattgaaagtgttatgttgctgctgatgtatactatgtagctagtactacctacagtggttacatctgtactgaagataaatattctttttcttgtcattatttccta---aatatagtataacaactgtttgcaaataatttacattgaattaggtattagtaatctagagatgatttaaagtatatgggaggatgtgcataggtaataaggaaatactagaccattttatacatgggacctgagcattcatagattttggtatccacagcgggccctagaacccatcccaaaaggataccaagagatgactgaataagactgactttaaaaaaaaagtttttgaaagaattggcaggggaaaaaatgtgggcaaagagcttttttggtgggaaggaatttaattagaattccatttcttaatggatggaggactacttatattttctattcagttttctgttggcttgttcaattgtcatttttaagagctcatttcattgcacctaaattttaaaaggtattgtcatgaagttgtgtctaatattctcttattttcgttttaataaaatgtatggttttgtgttgtcccttatagtgttcatttctgttttcactctttttatgattgatctttctggggattttgaaatagtttgcccatcttttcCTCTATTTTCCTTAACATATTAAT-ATAAATACTTTGAGAATCTTCTTGCTTGCTGGCTTCAATATCTACATCAACTCTTAGCCTGAT
i colAng1.NW_012115577v1   C 0 C 0
e otoGar3.GL873550          18203763    0 -  18854210 I
e aotNan1.NW_018496901v1      328989 51682 -    486031 I
e cebCap1.NW_016107755v1     1141096 46700 -   1771730 I
e calJac3.chr4              30715594 37031 + 171630274 I
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4             140702646    0 + 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820    5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=114127.000000
s hg38.chr6_GL000254v2_alt   1766064 406 +   4827813 tttttttattatactttaagttttagcgtacatgtgcacaacatgcaagttagttacatatgtatgcatgtgccatgttggtgtgctgcacccattaactcgtcatttaacattaggtatatctcctaatgctatccctccccacttcccccaccccacaacagtccccggtgtgtgatgttccccttcctgtgtccacgtgttctcattgttcaattcccacctatgagtgagaacacgaggtgtttggttttttctccttgcgatagtttgctgagaatgatggtttccagtttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtatgatagactggattaagaaaatgtggtacatatacaccatggaatacttagtctga
s panTro5.chr6              30612275 406 + 175400573 tttttttattgtactttaagttttagcgtacatgtgcacaacgtgcaggttagttacatatgtatgcatgtgccatgttggtgtgctgcacccattaactcatcatttaacattaggtatatctcctaatgctatccctccccacttcccccaccccacaacagtccccggtgtgtgatgttccccttcctgtgtccacgtgttctcattgttcaattcccacctatgagtgagaacacgaggtgtttggttttttctccttgcgatagtttgctgagaatgatggtttccagtttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtatgatagactggattaagaaaatgtggcacatatacaccatggaatactTAGTCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31036293 406 + 173848474 tttttttattatactttaagttttagcgtacatgtgcacaacgtgcaggttagttacatatgtatgcatgtgccatgttggtgtgctgcacccattaactcatcatttaacattaggtatatctcctaatgctatccctccccacttcccccaccccacaacagtccccggtgtgtgatgttccccttcctgtgtccacgtgttctcattgttcaattcccacctatgagtgagaacacgaggtgtttggttttttctccttgcgatagtttgctgagaatgatggtttccagtttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtatgatagactggattaagaaaatgtggcacatatacaccatggaatactTAGTCTGA
i panPan2.chr6             C 0 C 0
e otoGar3.GL873550          18203763   0 -  18854210 I
e aotNan1.NW_018496901v1      328989 51682 -    486031 I
e cebCap1.NW_016107755v1     1141096 46700 -   1771730 I
e calJac3.chr4              30715594 37031 + 171630274 I
e colAng1.NW_012115577v1      564241   0 -   1829203 C
e manLeu1.NW_012107142v1      671755 19074 -    735854 I
e chlSab2.chr17             29897889 12963 -  71996105 I
e cerAty1.NW_012002535v1      761230 13788 -    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4             140702646   0 + 170955103 I
e rheMac8.chr4              31114634 12132 + 172585720 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=469551.000000
s hg38.chr6_GL000254v2_alt   1766470 175 +   4827813 ttt-aTCTCTACTTGTTGCATTTTCTCTGCTGCTTGGCATGCCACATATTCTGGATGATGTGTTATAGAGGCTCTGGATTTTGCCATCTTCCTCCACAGACTGCTAACAATTTGATAGTTCATTAATTATAAAAGAATTACCTTTGGTAAAAATCGGACCCACTTTGATTCTGCTT
s panTro5.chr6              30612681 176 + 175400573 TTTTATCTCTACTTGTTGCATTTTCTCTGCTGCTTGGCATGCCACATATTCTGGATGATGTGTTATAGAGGCTCTGGATTTTGCCATCTTCCTCCACAGACTGCTAACAATTTGATAGTTCATTAATTATAAAAGAATTACCTTTGGTAAAAATCGGACCCACTTTGATTCTGCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31036699 176 + 173848474 TTTTATCTCTACTTGTTGCATTTTCTCTGCTGCTTGGCATGCCACATATTCTGGATGATGTGTTATAGAGGCTCTGGATTTTGCCATCTTCCTCCACAGACTGCTAACAATTTGATAGTTCATTAATTATAAAAGAATTACCTTTGGTAAAAATCGGACCCACTTTGATTCTGCTT
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             141479022 159 - 172585720 -tttatctctacttgttgcatttt-tctgctgcttggcatgccacatattctgggtgatgcgttatagaggttctggattttGCTGTCTTCCTCCTAAGACTGCTAACTGCTTGACAGTTCATTAATTATCA---------------TAAAAATCAGACCCACTTTGATTCTACTT
i rheMac8.chr4             n 12132 C 0
s macFas5.chr4             140556347 159 + 170955103 -tttatctctacttgttgcatttt-tctgctgcttggcatgccACATATTCTGGGTGATGCGTTATAGAGGTTCTGGATTTTGCTATCTTCCTCCTAAGACTGCTAACTGCTTGACAGTTCATTAATTACCA---------------TAAAAATCAGACCCACTTTGATTCTACTT
i macFas5.chr4             n 0 C 0
s cerAty1.NW_012002535v1      108545 159 +    863181 -tttatctctacttgttgcatttt-tctgctgcttggtatgccacatattctgggtgatgtgttatagaggttctggattttgctatcttcctcctaagaCTGCTAACTGCTTGACAGTTCATTAATTATCA---------------TAAAAATCCGACCCACTTTGATTCTACTT
i cerAty1.NW_012002535v1   n 13788 C 0
s chlSab2.chr17             42106162 159 +  71996105 -tttatctgtacttgttgcatttt-tctgctgcttggcatgccACATATTCTGGGTGATGTGTTATAGAGGTTCTGGATTTTGCTATCTTCCTCCTAAGACTGCTAACTGCTTGACAGTTCATTAATTATCA---------------TAAAAATCAGACCCACTTTGATTCTACTT
i chlSab2.chr17            n 12963 C 0
s manLeu1.NW_012107142v1       72027 159 +    735854 -tttatctctacttgttgcatttt-tctgctgcttggtatgccacatattctgggtgatgtgttatagaggttctggattttgctatcttcctcctaagaCTGCTAACTGCTTGACAGTTCATTAATTATCA---------------TAAAAATCAGACCCACTTTGATTCTACTT
i manLeu1.NW_012107142v1   n 19074 C 0
s colAng1.NW_012115577v1      564241 175 -   1829203 -TTTATCTCTACTTGTTGCATTTTCTCTGCTGCTTGGCAGGCCACATATTCTGGATGATGTGTTATAGAGGCTCTGGATTTTGCCATCTTCCTCCACAGACTGCTAACAATTTGATAGTTCATTAATTACAAAAGAATTACCTTTAGTAAAAATTGGACCCACTTTGATTCTGCTT
i colAng1.NW_012115577v1   C 0 C 0
e otoGar3.GL873550          18203763   0 -  18854210 I
e aotNan1.NW_018496901v1      328989 51682 -    486031 I
e cebCap1.NW_016107755v1     1141096 46700 -   1771730 I
e calJac3.chr4              30715594 37031 + 171630274 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=34132.000000
s hg38.chr6_GL000254v2_alt   1766645 13 +   4827813 AGGCTTGatttta
s panTro5.chr6              30612857 13 + 175400573 AGGCTTGatttta
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31036875 13 + 173848474 AGGCTTGatttta
i panPan2.chr6             C 0 C 0
s rheMac8.chr4             141479181 13 - 172585720 AGGCTTGATTTTA
i rheMac8.chr4             C 0 n 0
s cerAty1.NW_012002535v1      108704 13 +    863181 AGGCTTGATTTTA
i cerAty1.NW_012002535v1   C 0 I 22
s chlSab2.chr17             42106321 13 +  71996105 AGGCTTGATTTTA
i chlSab2.chr17            C 0 I 22
s manLeu1.NW_012107142v1       72186 13 +    735854 AGGCTTGATTTTA
i manLeu1.NW_012107142v1   C 0 I 22
s colAng1.NW_012115577v1      564416 13 -   1829203 AGGCTTGATTTTA
i colAng1.NW_012115577v1   C 0 I 1
e otoGar3.GL873550          18203763  0 -  18854210 I
e aotNan1.NW_018496901v1      328989 51682 -    486031 I
e cebCap1.NW_016107755v1     1141096 46700 -   1771730 I
e calJac3.chr4              30715594 37031 + 171630274 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4             140556506  0 + 170955103 C
e nomLeu3.chr1a             47781820  5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=356431.000000
s hg38.chr6_GL000254v2_alt   1766658 1286 +   4827813 ttttattttattttattttatttattttTttgttatactttaagttttagggtacatgtgcacaatgtgcaggttagttacataggtatacatgtgccatgctggtgtgctgcacccactaactcgtcatctagcattaggtatatctcccaatgctatccctcccccctccccccaccccacaacaatccccagagtgtgatgttccacttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaatatgcggtgtttggttttttgttcttgcgttagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcactttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttgggcatttgggttggttccaagactttgctattgtgaatagtgctgcaataaacatacgtgtacatgtgtctatatagcagcatgatttatagccctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaattgctacactgacttccacaatggttgaactagtttacagtcccaccaacagcataaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgattgccattctaactggtgtgagatgatatctcatagtggttttgatttgcatttctctgatggccagtgatggtgagcattttttcatgtgttttttggctgcataaatgtcttcttttgagaaatgtctgttcatgtccttcgcccactttttgatggggtggttttttttttcttgtaaatttgtttaagttctttgtagattctggatattagccctttgtcagatgagtaggttgtgaaaattttctcccatgttgtaggttgcctgctcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatgtaatgcctaggttttcttctagggtttttatggttttaggtctaacgtttaagtctttaatccatcttgaattgatttttgtataaggtgtaaggaaaggatccagtttcagctttctacatatggctagccagttttctcagcaccatttattaaatagggaatcctttccca
s panTro5.chr6              30612870 1281 + 175400573 ttttattttattttattttattt-----tTAattatactttaagttttagggtacatgtgcacaatgtgcaggttagttacataggtatacatgtgccatgctggtgtgctgcacccactaactcgtcatctagcattaggtatatctcccaatgctatccctcccccctccccccaccccacaacaatccccagagtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaatgtgcggtgtttggttttttgttcttgcgttagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcactttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtgctgcaataaacacacgtgtgcatgtgtctatatagcagcatgatttatagccctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaacggttgaactagtttacagtcccaccaacagcataaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgattgccattctaactggtgtgagatgatatctcatagtggttttgatttgcatttctctgatggccagtgatggtgagcattttttcatgtgttttttggctgcataaatgtcttcttttgagaaatgtctgttcatgtccttcgcccactttttgatggggtggttttttttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgagtaggttgcgaaaattttctcccatgttgtaggttgcctgctcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatgtaatgcctaggttttcttctagggtttttatggttttaggtctaacgtttaagtctttaatccatcttgaattgatttttgtataaggtgtaaggaaaggatccagtttcagctttctacatatggctagccagttttcccagcaccatttattaaatagggaatcctttccca
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31036888 1280 + 173848474 ttttattttattttattttattt-----tTAattatactttaagttttagggtacatgtgcacaatgtgcaggttagttacataggtatacatgtgccatgctggtgtgctgcacccactaactcgtcatctagcattaggtatatctcccaatgctatccctcccccctccccccaccccacaacaatccccagagtgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaatatgcggtgtttggttttttgttcttgcgttagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcactttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtgctgcaataaacacacgtgtgcatgtgtctatatagcagcatgatttatagccctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaacggttgaactagtttacagtcccaccaacagcataaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgattgccattctaactggtgtgagatgatatctcatagtggttttgatttgcatttctctgatggccagtgatggtgagcattttttcatgtgttttttggctgcataaatgtcttcttttgagaaatgtctgttcatgtccttcgcccactttttgatggggtgg-tttttttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgagtaggttgcgaaaattttctcccatgttgtaggttgcctgctcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatgtaatgcctaggttttcttctagggtttttatggttttaggtctaacgtttaagtctttaatccatcttgaattgatttttgtataaggtgtaaggaaaggatccagtttcagctttctacatatgactagccagttttcccagcaccatttattaaatagggaatcctttccca
i panPan2.chr6             C 0 C 0
e otoGar3.GL873550          18203763    0 -  18854210 I
e aotNan1.NW_018496901v1      328989 51682 -    486031 I
e cebCap1.NW_016107755v1     1141096 46700 -   1771730 I
e calJac3.chr4              30715594 37031 + 171630274 I
e colAng1.NW_012115577v1      564429    1 -   1829203 I
e manLeu1.NW_012107142v1       72199   22 +    735854 I
e chlSab2.chr17             42106334   22 +  71996105 I
e cerAty1.NW_012002535v1      108717   22 +    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4             140556506    0 + 170955103 C
e rheMac8.chr4             141479194    0 - 172585720 I
e nomLeu3.chr1a             47781820    5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=1746.000000
s hg38.chr6_GL000254v2_alt   1767944 3 +   4827813 agg
s panTro5.chr6              30614151 3 + 175400573 agg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31038168 3 + 173848474 agg
i panPan2.chr6             C 0 C 0
s macFas5.chr4             140556506 3 + 170955103 AGG
i macFas5.chr4             C 0 n 0
e otoGar3.GL873550          18203763 0 -  18854210 I
e aotNan1.NW_018496901v1      328989 51682 -    486031 I
e cebCap1.NW_016107755v1     1141096 46700 -   1771730 I
e calJac3.chr4              30715594 37031 + 171630274 I
e colAng1.NW_012115577v1      564429 1 -   1829203 I
e manLeu1.NW_012107142v1       72199 22 +    735854 I
e chlSab2.chr17             42106334 22 +  71996105 I
e cerAty1.NW_012002535v1      108717 22 +    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e rheMac8.chr4             141479194 0 - 172585720 I
e nomLeu3.chr1a             47781820 5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=5349.000000
s hg38.chr6_GL000254v2_alt   1767947 19 +   4827813 cttgattttAGACTTTGCT
s panTro5.chr6              30614154 19 + 175400573 cttgattttAGACTTTGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31038171 19 + 173848474 cttgattttAGACTTTGCT
i panPan2.chr6             C 0 C 0
e otoGar3.GL873550          18203763  0 -  18854210 I
e aotNan1.NW_018496901v1      328989 51682 -    486031 I
e cebCap1.NW_016107755v1     1141096 46700 -   1771730 I
e calJac3.chr4              30715594 37031 + 171630274 I
e colAng1.NW_012115577v1      564429  1 -   1829203 I
e manLeu1.NW_012107142v1       72199 22 +    735854 I
e chlSab2.chr17             42106334 22 +  71996105 I
e cerAty1.NW_012002535v1      108717 22 +    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4             140556509  0 + 170955103 I
e rheMac8.chr4             141479194  0 - 172585720 I
e nomLeu3.chr1a             47781820  5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=5622.000000
s hg38.chr6_GL000254v2_alt   1767966 10 +   4827813 ACTTTGCTAT
s panTro5.chr6              30614173 10 + 175400573 ACTTTGCTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31038190 10 + 173848474 ACTTTGCTAT
i panPan2.chr6             C 0 C 0
s colAng1.NW_012115577v1      564430 10 -   1829203 ACTTTGCTAT
i colAng1.NW_012115577v1   I 1 C 0
e otoGar3.GL873550          18203763  0 -  18854210 I
e aotNan1.NW_018496901v1      328989 51682 -    486031 I
e cebCap1.NW_016107755v1     1141096 46700 -   1771730 I
e calJac3.chr4              30715594 37031 + 171630274 I
e manLeu1.NW_012107142v1       72199 22 +    735854 I
e chlSab2.chr17             42106334 22 +  71996105 I
e cerAty1.NW_012002535v1      108717 22 +    863181 I
e macNem1.NW_012012100v1      661308 12157 +   1495729 I
e macFas5.chr4             140556509  0 + 170955103 I
e rheMac8.chr4             141479194  0 - 172585720 I
e nomLeu3.chr1a             47781820  5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=542462.000000
s hg38.chr6_GL000254v2_alt   1767976 239 +   4827813 TTCAGTGTGGTACTTACTCCAAGGCCACGGCCCTCACTCAT-AGTGCTTCACCATCCTCATGTCTCAACCCGGGTTTGGCTGGGCTAAATTAATTCCAATATCTCCTCACACTATGAAGCCTTTGGCATTTCTACATAGCATGCAATCCCCAAGCAGCTGTTCTCTGGTGGGCTTCTTACAGTATCACCTGGAGCATATGCAGCTTTGGAGtgcagattttgggagtttcttcgctgtag
s panTro5.chr6              30614183 236 + 175400573 TTCAGTGTGGTACTTACTCCAAGGCCACGGCCCTCACTCAT-AGTGCTTCACCATCCTCATGTCTCAACCCGGGTTTGGCTGGGCTAAA---ATTCCAATATCTCCTCACACTATGAAGCCTTTGGCATTTCTACATAGCATGCAATCCCCAAGCAGCTGTTCTCTGGTGGGCTTCTTACAGTATCACCTGGAGCATATGCAGCTTTGGAGtgcagattttgggagtttcttctctgtag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31038200 236 + 173848474 TTCAGTGTGGTACTTACTCCAAGGCCACGGCCCTCACTCAT-AGTGCTTCACCATCCTCATGTCTCAACCCGGGTTTGGCTGGGCTAAA---ATTCCAATATCTCCTCACACTATGAAGCCTTTGGCATTTCTACATAGCATGCAATCCCCAAGCAGCTGTTCTCTGGTGGGCTTCTTACAGTATCACCTGGAGCATATGCAGCTTTGGAGTGCAGATTTTGGGAGTTTCTTCTCTGTAG
i panPan2.chr6             C 0 C 0
s macNem1.NW_012012100v1      842556 236 -   1495729 TTCAGTGTGGTCCTTCCTCCAAGGCAAGGGTCCTCACTCAT-AGTGCTTCACCACCCTGTTGGCTCAACCCAGGTTTGGCTGGACTAAA---ATTCCAATATCTCCTCATACTCCAAAGCCTTTGGCATTTCTACTTAGCATGCAATCTCCAAGCAACTGTTCTCTGGTGGGCTTCTTAGAGTATCACCTGAAGCATATGCAGCTTAGGAGCGCAGATTTTGGGGGTTTCTTCTCTGtag
i macNem1.NW_012012100v1   n 12157 n 12157
s cerAty1.NW_012002535v1      108739 236 +    863181 TTCAGTGTGGTCCTTTCTCCAAGGCAAGGGTCCTCACTCAT-AGTGCTTCACCACCCTGTTGGCTCAACCCAGGTTTGGCTGGGCTAAA---ATTCCAACATCTCCTCATACTCCAAAGCCTTTGGCATTTCTACTTAGCATGCAATCTCCAAGCAACTGTTCTCTGGTGGGCTTCTTAGAGTATCACCTGAAGCATATGCAGCTTAGGAGCGCAGATTTTGGGGGTTTCTTCTCTGtag
i cerAty1.NW_012002535v1   I 22 n 22
s chlSab2.chr17             42106356 236 +  71996105 TTCAGTGTGGTCCTTCCTCCAAGGCAAGGGTCCTCATTCAT-AGTACTTCACCACCCTGTTGGCTCAACCCAGGTTTGGCTGGGCTAGA---ATTCCAACATCTCCTCATACTCCAAAGCCTTTGGCATTTCTACTTAGCATGCAATCTCCAAGCAACTGTTCTCTGGTGGGCTTCTTAGAGTATCACCTGAAGCATATGCAGCTTAGGAGTGCAGATTTTGGGGGTTTCTTCTCTGtag
i chlSab2.chr17            I 22 n 22
s manLeu1.NW_012107142v1       72221 236 +    735854 TTCAGTGTGGTCCTTCCTCCAAGGCAAGGGTCCTCACTCAT-AGTGCTTCACCACCCTGTTGGCTCAACCCAGGTTTGGCTGGGCTAAA---ATTCCAACATCTCCTCATACTCCAAAGCCTTTGGCATTTCTACTTAGCATGCAATCTCCAAGCAACTGTTCTCTGGTGGGCTTCTTAGAGTATCACCTGAAGCATATGCAGCTTAGGAGCGCAGATTTTGGGGGTTTCTTCTCTGtag
i manLeu1.NW_012107142v1   I 22 n 22
s colAng1.NW_012115577v1      564440 237 -   1829203 TTCAGTGTGGTACTTATTCCAGGGCCACGGCCCTCACTCATAAGTGCTTCACCTTCCTGATGTCTCAACCCAGGTTTGGCTGGGATGAA---GTTCCAACATCTCCTCACACTATGAAGCCTTTGGCATTTCTATGTAGTATGCAATCCCAAAGCAGCTGTTCTCTGGTGGGCTTGGTAGAGTATCACCTGGAGCATATGCAGCTTCGGAGTGCAGATTTTGGGAGTTTCTTCTCTGTGG
i colAng1.NW_012115577v1   C 0 C 0
e otoGar3.GL873550          18203763   0 -  18854210 I
e aotNan1.NW_018496901v1      328989 51682 -    486031 I
e cebCap1.NW_016107755v1     1141096 46700 -   1771730 I
e calJac3.chr4              30715594 37031 + 171630274 I
e macFas5.chr4             140556509   0 + 170955103 I
e rheMac8.chr4             141479194   0 - 172585720 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=918894.000000
s hg38.chr6_GL000254v2_alt   1768215 1752 +   4827813 ctccctccttcagcaccctacccttaaatcccagtcaaagtgccaagcctgaactctgatctctgattcctttgctactgagattgattctctctgcttgggttccatttcccttcattgaattttg--aaaaaaatcctcttagaaagaaagctgATGAGGATGTGAGTCTCTCTTTCAGGGACTCCATTCCCTGGAGGGTGATAGTCCTGCTCTGGCTGCTGTTTTGCAGCTGCACAACTGCATCGT--GTTTTGTCTGGCTTTTATACTTGTTTACAGTGGGAGGATGAGTTTTAAATGAGCTAGTCTATCACAGTTCAAGTCAGAAGACCTCTAATCCTTCAATAGTCATTGCATTTGAAAATCTGAATAGGGTAATTTGACAATTCACAGGCAAAGTTAATATGTTATATCTTAGTGCCCAGTTGAAACCTCAATTTCATCTTTAACAACCTTATacacacaaaatacacacacacacacacaca----tcacTGTGTTATAcagtcatgcactgcttaatgatgtttctgtcaatgattgatcacgtatacgactgtcatcctattaaacggagctgaaaaattcctatcacctagtgacattgtagccattgtaatgtcataacacaatgcattaatcatgtgcttgtggtgatgctgatgtaaataaacctactgcactgccaatcctataaaagtctaccccatacagttaaaaacagcatgtaatacttgatgataataaatatgttactggtttatgtatttactatactttttatggtgattttagagtgtgctctaattattttttaagttaaattaaaacagcgtcaggcaagtcctttaggaggtattccagaagaaggcattgttatcacaggagatgacagttccatgcttgttattacctgtgaaa---taacagtgggacaagatgtgaaggctgaagttggtgatattgttgatcctgaccctgtgtcagcctaggctaatgtatgtctttgtttttaccaaaaaagattaaaaggttaaaaaattaagtagaaatagtttctagaatgagaatataaggaaaaatatttttgtatagctgaataatgtgctggtgtttt-aagctaagtgctattacaaaatagttgaatttttttaaaaaattaaggtttataaatatgaaaaagttcaagacttgaactcagctttggatcaagtggatctgat-agacacctacagagctttccacccaaaaacaacagaatatacattcttctcattgctacacagcacctactctaaaattggtcacataatcaaaagtaaaacactcctcagcaaatgcaaaaagaactgaaatcataataaacagtctctcagaccacagcacaatcaaattagaaaccaaaagtaagaaattcgctcaaaaccatacaactacatggaaattgaacaacctgctcctgaatgactgttgggtaaattattaaattaaggcagaaatcaataagttatttgaagctaatgagaatgaagagacaatgtatcagaatctttgggacacagctacagcagtgtaaagagggaaatttatagcactaaatgcctatatcaaaacaccagaaaaatctcaagttaacaatctagtatcacaactaaaagaactagagaaacaaaaacaaatcccaaagctagcagaagacaagaaataacaaagatcggagctgaactgaaggagagagagacacacaaaacccttcaaaa
s panTro5.chr6              30614419 1756 + 175400573 ctccctccttcagcaccctacccttaaatcccagtcaaagtgccaagcctgagctctgatctctgattcctttgctgctgagattgattctctctgcttgggttccatttcccttcattgaattttg--aaaaaaatcctcttagaaagaaagctgatgaggatgtgagtctctctttcagggactccattctctggagggtgatagtcctgctctggctgctgttttgcagctgcacaactgcattgtatgttttgtctggcttttatacttgtttacagtgggaggatgagttttcaatgagctagtctatcACAGTTCAAGTCAGAAGACCTCTAATCCTACAATAGTCATTGCATTTGAAAATCTGAATAGGGTAATTTGACAATTCACAGGCAAAGTTAATATGTTATATCTTAGTGCCCAGTTGAAACCTCAATTTCATCTTTAACAACCTTATacacacaaaatacacacacacacacacaca----ccacTGTGTTATAcagtcatgcactgcttaatgatgtttctgtcaatgatcgatcacgtatacaactgtcatcctattaaacggagctgaaaaattcctatcacctagtgacattgtagccattgtaatgtcataacacaatgcattaatcatgtgcttgtggtgatgctgatgtaaataaacctactgcactgccaatcctataaaagtctaccccatacagttaaaaacagcatgtaatacttgatgataataaatatgttactggtttatgtatttactatactttttatggtgattttagagtgtgctctaattattttttaagttaaattaaaacagcatcaggcaggtcctttaggaggtattccagaagaaggcattgttatcacaggagatgacagttccatgcttgttattacctgtgaaaa-cttccagtgggacaagatgtgaaggctgaagttggtgatattgttgatcctgaccctgtgtcagcctaggctaatgtatgtctttgtttttaccaaaaaagattaaaaggttaaaaaattaagtagaaatagtttctagaatgagaatataaggaaaaatatttttgtatagctgaataatgtgctggtgtttttaagctaagtgctattacaaaatagttgaatttttt-aaaaaattaaggtttataaatataaaaaagttcaagacttgaactcagctttggatcaagtggatctgat-agacatctacagagctttccacccaaaaacaacagaatatacattcttctcattgctacacagcacctactctaaaattggtcacataatcaaaagtaaaacactcctcagcaaatgcaaaaagaactgaaatcataataaacagtctctcagaccacagcacaatcaaattagaaaccaaaagtaagaaatttgctcaaaaccatacaactacatggaaattgaacaacctgctcctgaatgactgttgggtaaattattaaattaaggcagaaatcaagaagttatttgaagctaatgagaatgaagagacaatgtatcagaatctttgggacacagctacagcagtgtaaagagggaaatttatagcactaaatgcctatatcaaaacaccagaaaaatctcaagttaacaatctagtatcacaactaaaagaactagagaaacaaaaacaaatcccaaagctagcagaagacaagaaataaccaagatcagagctgaactgaaggagagagagacacacaaaacccttcaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31038436 1752 + 173848474 CTCCCTCCTTCAGCACCCTACCCTTAAATCCCAGTCAAAGTGCCAAGCCTGAGCTCTGATCTCTGATTCCTTTGCTGCTGAGATTGATTCTCTCTGCTTGGGTTCCATTTCCCTTCATTGAATTTTG--AAAAaaatcctcttagaaagaaagctgatgaggatgtgagtctctctttcagggactccattctctggagggtgatagtcctgctctggctgctgttttgcagctgcacaactgcattgtatgttttgtctggcttttatacttgtttacagtgggaggatgagttttcaatgagctagtctatcACAGTTCAAGTCAGAAGACCTCTAATCCTACAATAGTCATTGCATTTGAAAATCTGAATAGGGTAATTTGACAATTCACAGGCAAAGTTAATATGTTATATCTTAGTGCCCAGTTGAAACCTCAATTTCATCTTTAACAACCTTATacacacaaaatacacacacacacacac--------cacTGTGTTATAcagtcatgcactgcttaatgatgtttctgtcaatgatcaatcacgtatacaactgtcatcctattaaacggagctgaaaaattcctatcacctagtgacattgtagccattgtaatgtcataacacaatgcattaatcatgtgcttgtggtgatgctgatgtaaataaacgtactgcactgccaatcctataaaagtctaccccatacagttaaaaacagcatgtaatacttgatgataataaatatgttactggtttatgtatttactatactttttatggtgattttagagtgtgctctaattattttttaagttaaattaaaacagcatcaggcaggtcctttaggaggtattccagaagaaggcattgttatcacaggagatgacagttccatgcttgttattacctgtgaaaa-cttccagtgggacaagatgtgaaggctgaagttggtgatattgttgatcctgaccctgtgtcagcctaggctaatgtatgtctttgtttttaccaaaaaagattaaaaggttaaaaaattaagtagaaatagtttctagaatgagaatataaggaaaaatatttttgtatagctgaataatgtgctggtgtttttaagctaagtgctattacaaaatagttgaattttta-aaaaaattaaggtttataaatataaaaaagttcaagacttgaactcagctttggatcaagtggatctgat-agacatctacagagctttccacccaaaaacaacagaatatacattcttctcattgctacacagcacctactctaaaattggtcacataatcaaaagtaaaacactcctcagcaaatgcaaaaagaactgaaatcataataaacagtctctcagaccacagcacaatcaaattagaaaccaaaagtaagaaatttgctcaaaaccatacaactacatggaaattgaacaacctgctcctgaatgactgttgggtaaattattaaattaaggcagaaatcaagaagttatttgaagctaatgagaatgaagagacaatgtatcagaatctttgggacacagctacagcagtgtaaagagggaaatttatagcactaaatgcctatatcaaaacaccagaaaaatctcaagttaacaatctagtatcacaactaaaagaactagagaaacaaaaacaaaccccaaagctagcagaagacaagaaataaccaagatcagagctgaactgaaggagagagagacacacaaaacccttcaaaa
i panPan2.chr6             C 0 C 0
s colAng1.NW_012115577v1      564677 1758 -   1829203 CTCCCTCTTTCAGCAGCCTATCCCTAAATCCCAGTAAAGGTGCCAGGTCTGAACTCTGATCCCTGATTCATTTGCTAATGCGATTGATTCTCTCTGCTTGGGTTCCATTTCCCTTCATTGTATTTTGAAAAAAAAATCCTTTTAGAAAGAAAGCTGATGAGGATGTGAGTCTC----TCAGGGATTCCATTCTCTGAAGGGTGATAGTCCTGCTCTGGCTGCTGTTTTGTGGCTGCACAACTGCAATGTATGTTTTGTGTGGCTTTTATACTTGTTTACAGTGGGAGAATGAGTTTTAAATGAGCTATTCTCTCACAGTTCAAGCCAGAAGACCTCTAATCCTTCAATAGTCATTGCAtttgaaaatctgaatggggtaatttgacaattcacaggaaaaggtagtatgttataccttagtgcccagttgaaacctcaatgtcatctttaacaacctTATGcacacaaaatacacacacacacactcacacacCCCACTGCGTTATAcagtcatgcaccacataatgatgtttctgtcaatgatggatcacatatacgactgtcgtcctattaaacggagctgaaaaattcctatcacctagtgacattgtggccattgtaatgtcgtaacacagtgcattaatcatgtgcttgtggtgatgctgatgtaaataaacctactgcactgccaatcctatcaaagtctaccacatacaggtaaacacagtatgtaatacttgatgataataaatatgttactggtttatgtatttactaaactttttatggtgattttagagtgtgctctaattattttttaagttaaattaaaacagcctcaggcaggtcctttaggagatattccagaagaaggcattgttatcatagaagatgacagctccatgcttgttattacctgtaaaaatcttccagtgggacaagatgtgaaggctgaagacggtgatattgttgatcctgaccctgtgtcagtctaggctaaggtatgtctttgtttttaccaaaaaagattacaaggttaaaaatctaagtagaaataatttctagaatgagaatataaggaaaaatatttttgtatagctgaataatgtgttggtgtttt-aagctaagtgctattacaaaatagttgaaaaatta-aaaaaattaaggtttgtaaatataaaaaagttcaagacctgaactcagctctggatcaagtggatctgataagacatctacagagttttccacccaaaaacaacagaatatacattcttctcattgctacacagcacctcctctaaaattggtcacataatcaaaagtaaaacattcctcagcaaatgc-aaaagaactgaaatcataataaacagtctctcagaccacagcacaatcaaattagaaaccaagagtaagaaatccactcaaagccatacaactacctggaaattgaacaacctgctcctgaatgactcttgggtaaattattaaattaaggcagaaatcaagaagttatttgaagctaatgagaatgaagagacaatgtatcagaatctttgggacacagctatagcagtgtcaagtgggaaatttatagcactaaatgcctatatcaaaacaccagaaaaatctcaagttaacaatctaatatcacaactaaaagaactagagaaccaaaaacaaaccccaaagctagcagaagacaagaaataaccaagatcagagctgaactgaaggagagcaagacacacaaaacccttcaaaa
i colAng1.NW_012115577v1   C 0 I 15909
e otoGar3.GL873550          18203763    0 -  18854210 I
e aotNan1.NW_018496901v1      328989 51682 -    486031 I
e cebCap1.NW_016107755v1     1141096 46700 -   1771730 I
e calJac3.chr4              30715594 37031 + 171630274 I
e manLeu1.NW_012107142v1       72457   22 +    735854 I
e chlSab2.chr17             42106592   22 +  71996105 I
e cerAty1.NW_012002535v1      108975   22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509    0 + 170955103 I
e rheMac8.chr4             141479194    0 - 172585720 I
e nomLeu3.chr1a             47781820    5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=2927785.000000
s hg38.chr6_GL000254v2_alt   1769967 10557 +   4827813 [encoded data, 10563 characters]
s panTro5.chr6              30616175 10550 + 175400573 [encoded data, 10563 characters]
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31040188 10516 + 173848474 [encoded data, 10563 characters]
i panPan2.chr6             C 0 C 0
e otoGar3.GL873550          18203763     0 -  18854210 I
e aotNan1.NW_018496901v1      328989 51682 -    486031 I
e cebCap1.NW_016107755v1     1141096 46700 -   1771730 I
e calJac3.chr4              30715594 37031 + 171630274 I
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457    22 +    735854 I
e chlSab2.chr17             42106592    22 +  71996105 I
e cerAty1.NW_012002535v1      108975    22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509     0 + 170955103 I
e rheMac8.chr4             141479194     0 - 172585720 I
e nomLeu3.chr1a             47781820     5 - 122973662 I
e gorGor5.CYUI01015528v1      556894  1645 +   2037526 I

a score=7128.000000
s hg38.chr6_GL000254v2_alt   1780524 14 +   4827813 agaaagagaaattg
s panTro5.chr6              30626725 14 + 175400573 agaaagagaaattg
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31050704 14 + 173848474 agaaagagaaattg
i panPan2.chr6             C 0 C 0
s aotNan1.NW_018496901v1      380671 14 -    486031 agagagagagattg
i aotNan1.NW_018496901v1   I 51682 I 1
e otoGar3.GL873550          18203763  0 -  18854210 I
e cebCap1.NW_016107755v1     1141096 46700 -   1771730 I
e calJac3.chr4              30715594 37031 + 171630274 I
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457 22 +    735854 I
e chlSab2.chr17             42106592 22 +  71996105 I
e cerAty1.NW_012002535v1      108975 22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509  0 + 170955103 I
e rheMac8.chr4             141479194  0 - 172585720 I
e nomLeu3.chr1a             47781820  5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=243880.000000
s hg38.chr6_GL000254v2_alt   1780538 301 +   4827813 aaaaaattctgaaaataaatgataatggaaatgcaacataccaaaacctaagggatacagtgaaagtaatactaagagggaagtttatagctataagtagctacatc-----aaaaaaaaaa-gaaaaacttcaaataaacaatacaacaatgcatcttaaatagctagaaaagcaagggaaa-accaaacccaaaattagtagaagaaaagaaatatgaagatcagaacaaaagtaaatgagtttgaaatgaagaaaacaataccaaagatcaatgaaacaaaaagtaagttttttgaaaagttaaa
s panTro5.chr6              30626739 302 + 175400573 aaaaaattctgaaaataaatgataatggaaatgcaacataccaaaacctaagggatacagtgaaagtaatactaagagggaagtttatagctataagtagctacatc-----aaaaaaaaaaagaaaaacttcaaataaacaatacaacaatgcatcttaaatagctagaaaagcaagggaaa-accaaacccaaaattagtagaagaaaagaaatatgaagatcagaacaaaagtaaatgagtttgaaatgaagaaaacaataccaaagatcaatgaaacaaaaagtaagttttttgaaaagttaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31050718 301 + 173848474 aaaaaattctgaaaataaatgataatggaaatgcaacataccaaaacctaagggatacagtgaaagtaatactaagagggaagtttatagctataagtagctacatc-----aaaaaaaaaa-gaaaaacttcaaataaacaatacaacaatgcatcttaaatagctagaaaagcaagggaaa-accaaacccaaaattagtagaagaaaagaaatatgaagatcagaacaaaagtaaatgagtttgaaatgaagaaaacaataccaaagatcaatgaaacaaaaagtaagttttttgaaaagttaaa
i panPan2.chr6             C 0 C 0
s cebCap1.NW_016107755v1     1187796 299 -   1771730 aaaaaattctgaaaataaatgataatggaaatgcaacataccaaaatctaagggacagagtgaaattagtactaagaggaaagtttatagccataagtggctacatt-------aagaaaaa-gaaaaacttcaaacaaacaatgtaacaatgtatcttaaataactggaaaagcaagggaaaccccaaacccaaaattcgtagaagaaaagaaacataaagatcag-acaaaagtaaatgaatttgaaatgaaggaaaaaataccaaaggtcaatgaaacaaaaagtaagttttttgaaaaattaaa
i cebCap1.NW_016107755v1   I 46700 C 0
s aotNan1.NW_018496901v1      380686 306 -    486031 aaaaagttctgaaaataaatgataatggaaatgcaacataccaaaacctaagggatacagtgaaattagtactaagaataaagtttatagccataagtgcctacattaaaaaaaaaaaaaaa-gaaaaacttcaaataaacaatgtaacaatgcatcttaaataactagaaaagcaagggaaaaaccaaacccacaattcatagaagaaaagaaacataaacatcagaacaaaagtaaatgaatttgaaatgaagaaaaaaa-accaaagatcaatgaaacaaaaagtaagtttttttaaaagttaaa
i aotNan1.NW_018496901v1   I 1 C 0
e otoGar3.GL873550          18203763   0 -  18854210 I
e calJac3.chr4              30715594 37031 + 171630274 I
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457  22 +    735854 I
e chlSab2.chr17             42106592  22 +  71996105 I
e cerAty1.NW_012002535v1      108975  22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509   0 + 170955103 I
e rheMac8.chr4             141479194   0 - 172585720 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=1807022.000000
s hg38.chr6_GL000254v2_alt   1780839 1523 +   4827813 caaaattgacaaatcattagccagacta-----acagaaaaagacagaagacccaaataaataaaatcaaacat-----gaaaaaagagacattacaactgatactgcagaaattcaaaggatcatcagtggctactatgggcaactacatgccaataaattggaaaacctagaagaaatgggtagattcctagatacatataacctaccaagattgaatggtgaacaaaatccaaaacctgaacagaccaatagcaagtaatcagataaaagtcataacaaaaagtctcccagcaaagaaaagccctgatggcttcactgctgaattctaccaaacatttaaagaaaaactaataccaatcctgttcaaactgttccaaaaaattcaggaaggaatacttccaaaatcatcctacaagggcagtattaccctgataccaaaaccggacaaagacacatcaaaaaaa-ggaagctataggccaatattactgacaaatattgttgcaaaaatcctcaacaaaatactagcaaataaaaatcgacaacacattaaaaagatcattcctcatgaccaagtgggatttatcctagggatgcaaggatggttcaaaatatgcaagtcaatcaatgtgatacatcatattcaacagaatgaaagacaaaaaccatataatcatttcaattgatgctgtaaaaacagtcaataaaattcaacattccttcatgataaagactgtcaaaaaactgagtatagaaggaacataccttaacataataa--gccattatgtacaacaaacccacagctagtatcatactaaatgaatggggaaaaattgaaggcctttcctctaagatcagtaacacaacaaggttgcctgctttcaccaccgttattgaccatagtattggaaaccctagctagagcaatcagacaagagaaagaaatagaagtcaaattatccttgtttgcagatgatataatcttatatttggaaaaatctacaagactccaccaaagaactattagaactgataaacaaattcagtaaagttgcataatacaaaatcaacatacaaaaatcagtagtagccaggtacagtgtctcatgcctataatctcagcactttgggagatagaggagggtgtatcacttgagcctggaagtttaagaccagcctaggcaacttagggagactgcatctttaccaaaaaaaaaaaaaaattgt-aattagctgagtgtggtgacacgtgcctgtggtcccaactacttggcaggctgaggttgtaggttgagactgcagtaagttgtagtcatgccactgcactccagcctgggaaatatggc-agaccctgtctcttaaaaaagaaaaaTTAATAAggcgtgatagtgcatacctgtggtcccagctgctcaggaagctgaggcaggaggaccacttgagcccaagaagtcaaagcagcggtgagctgtgttcataccactgcactccagactgggcgacagagcaagaccctgtctcagaaaaaa-ggga
s panTro5.chr6              30627041 1521 + 175400573 caaaattgacaaatcattagccagacta-----acagaaaaagacagaagacccaaataaataaaatcaaacat-----gaaaaaagagacattacaactgatactgcagaaattcaaaggatcatcagtggctactatgggcaactacatgccaataaattggaaaacctagaagaaatgggtagattcctagatacatataacctaccaagattg----gtgaacaaaatccaaaacctgaacagaccaatagcaagtaatcagataaaagtcataacaaaaagtctcccagcaaagaaaagacctgatggcttcactgctgaattctaccaaacatttaaagaaaaactaataccaatcctgttcaaactgttccaaaaaatacaggaaggaatacttccaaaatcatcctacaagggcagtattaccctgataccaaaaccggacagagacacatcaaaaaaaaggaagctataggccaatattactgacaaatattgttgcaaaaatcctcaacaaaatactagcaaataaaaatcgacaacacattaaaaagatcattcctcatgaccaagtgggatttatcctagggatgcaaggatggttcaaaatatgcaagtcaatcaatgtgatacatcatattcaacagaatgaaagacaaaaaccatataatcatttcaattgatgctgtaaaaacagtcaataaaattcaacattccttcatgataaagactgtcaaaaaactgagtatagaaggaacataccttaacataataaaagccattatgtacaacaaacccacagctagtatcatactaaatgaatggggaaaaattgaaggcctttcctctaagatcagtaacacaacaaggttgcctgctttcaccaccattattgaccatagtactggaaaccctagctagtgcaatcagacaagagaaagaaatagaagtcaaattatccttgtttgcagatgatataatcttatatttggaaaaatctacaagactccaccaaagaactattagaactgctaaacaaattcagtaaatttgcataatacaaaatcaacatacaaaaatcagtagtagccaggtacagtgtctcatgcctataatctcagcactttgggagatagaggagggtgtatcacttgagcctggaagtttaagaccagcctaggcaacttagggagactgcatctttaccaaaaaaaaaaaaaa-ttgt-aattagctgagtgtggtgacacgtgcctgtggtcccaactacttggcaggctgaggttgtaggttgagactgcagtaagttgtagtcatgccactgcactccagcctgggaaatatggc-agaccctgtctcttaaaaaagaaaaaTTAATAAggcgtgatagtgcatacctgtggtcccagctgctcaggaagctgaggcaggaggaccacttgagcccaagaagtcaaagcagcggtgagctgtgttcataccactgcactccagactgggcgacagagcaagaccctgtctcagaaaaaa-GGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31051019 1521 + 173848474 caaaactgacaaatcattagccagacta-----acagaaaaagacagaagacccaaataaataaaatcaaacat-----gaaaaaagagacattacaactgatactgcagaaattcaaaggatcatcagtggctactatgggcaactacatgccaataaattggaaaacctagaagaaatgggtagattcctagatacatataacctaccaagattg----gtgaacaaaatccaaaacctgaacagaccaatagcaagtaatcagataaaagtcataacaaaaagtctcccagcaaagaaaagccctgatggcttcactgctgaattctaccaaacatttaaagaaaaactaataccaatcctgttcaaactgttccaaaaaatacaggaaggaatacttccaaaatcatcctacaagggcagtattaccctgataccaaaaccggacagagacacatcaaaaaaaaggaagctataggccaatattactgacaaatattgttgcaaaaatcctcaacaaaatactagcaaataaaaatcgacaacacattaaaaagatcattcctcatgaccaagtgggatttatcctagggatgcaaggatggttcaaaatatgcaagtcaatcaatgtgatacatcatattcaacagaatgaaagacaaaaaccatataatcatttcaattgatgctgtaaaaacagtcaataaaattcaacattccttcatgataaagactgtcaaaaaactgagtatagaaggaacataccttaacataataaaagccattatgtacaacaaacccacagctagtatcatactaaatgaatggggaaaaattgaaggcctttcctctaagatcagtaacacaacaaggttgcctgctttcaccaccattattgaccatagtactggaaaccctagctagtgcaatcagacaagagaaagaaatagaagtcaaattatccttgtttgcagatgatataatcttatatttggaaaaatctacaagactccaccaaagaactattagaactgctaaacaaattcagtaaatttgcataatacaaaatcaacatacaaaaatcagtagtagccaggtacagtgtctcatgcctataatctcagcactttgggagatagaggagggtgtatcacttgagcctggaagtttaagaccagcctaggcaacttagggagactgcatctttaccaaaaaaaaaaaaaa-ttgt-aattagctgagtgtggtgacacgtgcctgtggtcccaactacttggcaggctgaggttgtaggttgagactgcagtaagttgtagtcatgccactgcactccagcctgggaaatatggc-agaccctgtctcttaaaaaagaaaaaTTAATAAggcgtgatagtgcatacctgtggtcccagctgctcaggaagctgaggcaggaggaccacttgagcccaagaagtcaaagcagcggtgagctgtgttcataccactgcactccagactgggcgacagagcaagaccctgtctcagaaaaaa-GGGA
i panPan2.chr6             C 0 C 0
s calJac3.chr4              30752625 1504 + 171630274 caaaattgacaaatctttagccagacta---------------a-agaagacccaaacaaataaaatcaaagattttttttaaaatgacacattacaactagtactgcagaaattcgaaggatcatctgtggccactatgggcaactatatgccaataaatcggaaaacctagaagaaatggatagattcctagacacacgcaacataccaagattgaatggtgaataaaatccaaaacctgaacagaccaatagcaagtaatgagat-----ccatagtaaaaagtctcccagcaaag-aaagccccgatggcttcactgctgaactctaccaaacatttagagaaaaactaatacc-atcctgttcaaactgttcaaaaaaatagaggagggcatacttccaagttcattctaagaagccagtattaccctgataccaacactgggcaaagacacatc-aaaaaaaggaagctaaaggccaatatcactgataaatattgatgcaaaaatcctcaacgaaatactagcaaatcaaaatcaacaacacattaaaaagatcgttcctgatgataaagtgggatttactctagggatgcaaggatggttcgaaatatgcaaatgagttaatgtgatacatcgca-tcaacagaatgaaagacgaaaaccatataatcatttcagttgatgctgaaaaaccattcaataaaactcagcattccttcatgataaagactgtcaaaaaactgagtatagaagggttatattttaacataataaaagccaatatgttcaacaaacccacagctactatcatactgaatgaatggggggaaattgaaagcctttcctctaagatcaggaacacaataaggttgcctgctttcccgactgttattcaacatagtattggaagccctggctagagcaaacagacaagagaaagaaatagaagtcaaattatccttctttgcagatgatataatcttatatttggaaaaatctgaaagactccaccaaa-aactattagaactgataaacaaattcagtaaagttgcataatacaaaatcaacatacaaaaatcagtagtagccaggtgcagtggctgatgcctgtaatctcggcactttgggagaccaaggagggtgtatcacttgagcccaggagttcgagaccagcataggcaacatagggataccacatctccac----aaaaaaatttt-tttt-aattagctgagtgtggtgacacctgcctgtggtcccaactacttggcaggctgaagttgtaggttgagattgcagtgagctataatcgtgccactgcactccaacctgggcaatatggcaagaccctgtctcttaaaaaaa---aattaactaggcatagtagtgcatacctgtggtcccagctgctcaggaggctgaggcaggaggattacttgagcccaagaagtcaaagctgcagtgagctgtgtttataccactgcacttcagactggacaacagagcaagaccctgtctcagaaaaaaGGGGA
i calJac3.chr4             I 37031 C 0
s cebCap1.NW_016107755v1     1188095 1524 -   1771730 caaaattgacaaatctttagccagactaaaaaaaaaaaaaaaga-agaagactcaaacaaataaaatcaaagattttaataaaaatgagacattacaactagtactgcagaaattcaaaggatcatccgtggccaccatgggcaactatatgccaataaattggaaaatctagaagaaatgggtagattcctagatacatacaacctaccaagattgaatggtgcataaaatccaaaatctgaacagaccaatagcaagtaatgagatcaaagccataataaaaagtcttccagcaaag-aaagcccc-atg--ttcactgctgaattctaccaaacatttagagaaaaactaataccaatcctgttcaaactgttcaaaaaaatagatgagggtatacttccaaattcattctaagaatccagtattaccctgataccaaaaccggacaaagacacatc-aaaaaaaggaagctataggccaatatcactgataaatattcatgcaaaaatcctcaacgaaatactagcaaatcaaaatcaacaacacattaaaaagatcgttcctgatgatcaagtgggatttactctagggatgcaaagatggttcaaaatgtgcaaatccgttaatgtggtacatcaca-tcaacagaatgaaagacaaaaaccatagaatcatttcaattgatgctg-aaaaccattcaataaaattcagcattccttcatgataaagactgtcaaaaaactgagtatagaaggggcatgccttaacataataaaagccattatgtacgacaagcccacagctactatcatactgaatgaatggggaacaattgaaagcccttcctctaagatcagtaacacaacaaggttgcctgctttcgcaactgttatttaacatagtataggaagccctggctagagcaaacagacaagagaaagaaatagaagtcaaattatcctcgtttgcagatgatataatcttatatttggaaaaagctgaaagactccaccgaa-aattattagaaatgataaacaaattcagtaaagttgcaaaatacaaaatcaacatacaaaaatcagtagtagccaggtgcagtggctgatgtctgtaatctcggcactttgggaaaccaaggagggtgtatcacttgagcctatgagttcgagaccagcataggcaacatagggatagcacatctctac----aaaaaaatttt-tttt-aattagctcagtatggtgacacgtgcctgtggtcccaactacttggcagactgaagttgtaggttgagactgcagtgagctatactcgtgccactgcactccaacctgggcaacatggcaagaccctgtctcttaaaaaaaTATaattaactaggcatagtagtgcacacctgtggtcccagctgctcaggaggctgagacaggaggatcacttgagcccaagaagtcaaagctgcagtgagctgtgtttataccactgcactccagaccgggcaacagagcaagaccctgtctcaggaaaaaGGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      380992 1527 -    486031 caaaactggcaaatctttagccagactaactaaagaaaaaaagacagaagacccaaacaaataaaatcaaagattttaattaaaaggagacattacaactagtactgcagaaattcaaaggatcatcagtggctactatggacaactatacgccgataaattggaaaacttagaagaaatgggtagattcctagatacatacaacctaccaagattgaatggtgaataaaatccaaaacctgaacagaccagtagcaagtaatgagatcaaagccaaaataaaaagtctcccagcaaag-aaagccccgatggcttcactgctgaattctaccaaacatttagagaaaaactaataccaatcctgttcaaacggttcaaaaaaatagaggagggcatacttccaagttcattctaagaagccagtattaccctgataccaaaaccggacaaagacacatcaaaaaaaaggaagctataggccaatatcactgataaatattgatgcaaaaatcctcaacgaaatactagcaaatcaaaatgaacgacacattaaaaagatcgtttctgatgatcaagtggaatttactctagggatgcaaggatggttcaaaatatgcaaatcagttaatgtgatacatcaca-tcaacagaatgaaagacgaaaaccatataatcatttcaattgatgctgaaaaaccattcaataaaactcagcattccttcatgataaagactgtcaaaaaactgagaatagaagggatataccttaacataataaaagccattatgtacaacaaacccacagctactatcatactgaatgaatgggga--aattgaaagcctttcctctaagatcagtaacacaacaaggttgcctgctttcgcgactgttattcaacatagcattggaagccctagctagagcaaacagacaagagaaagaaatagaagtcaaattatccttgtttgctgttgatataatcttatatttggaaaaatctgaaagactccaccaaa-aactattagaactgataagcaaattcagtaaagttgtataatacaaaattaacatgcaaaaatcagtagtagtcaggtgcagtggctgatgcctgtaatctcagcactttgaaagaccaaggagggtgtatcacttgagcctaggagttcgagaccagcataggtaacatacggataccacatctctac----aaaaaaatttt-ttttcaattagctgagtatggtgacacgtgcctgtggtcccaactacttggcaggctgaagttgtaggttgagactgcagtgacctataatcgtgccactgcactccaacctgggcaatatggcaagaccctgtctcttaaaaaaa-aTAATTAACTAggcatagtagtgcatacctg-ggtcccagctgctcaggaggctgaggcaggagcaccacttgagcccaagaagtcaaagctgcagtgagctgtgtttataccactgtactccagactgggcaacagagcaagaccctgtctcagaaaaaaGGGGA
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550          18203763    0 -  18854210 I
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457   22 +    735854 I
e chlSab2.chr17             42106592   22 +  71996105 I
e cerAty1.NW_012002535v1      108975   22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509    0 + 170955103 I
e rheMac8.chr4             141479194    0 - 172585720 I
e nomLeu3.chr1a             47781820    5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=661295.000000
s hg38.chr6_GL000254v2_alt   1782362 472 +   4827813 aaCCCTGGACATTCCTACACCTGAGGCCTCTTCAATGGCTGCTGCCAATGACTTT-GGCCACAAGGGAtgatgtatgaaggaaacatgggccctgaaataaaattggtctgaatttgaacatggcctttaccatttttttattactatggacaaattac-cctcattactgagcattggtttcttaatatataaactgggagtaataTC--CCCAATTAATAACAATGGGACATAGCAGGATGGGGTTGCCCTTTTCACCCTTTTCATCCCTCCTCTCACTCACT--GGATGAGAGTTTCTACACAATAATCAATTGGTGCTGTGCTGTGCTGTGTCACTTTGCATCTGCTCATGAGAGGATATTTTGTCTTTAAGATGCCTACTCTAAAGATATGAAGAGCTAGGAAAATGGTAATTGCTGCCCTTAAGCAAGCACTTGGTGCAGTGGCAGAACAAAGTTGGAATTTTGGGGTT-GGG
s panTro5.chr6              30628562 472 + 175400573 AACCCTGGACATTCCTACACCTGAGGCCTCTCCAATGGCTGCTGCCAATGACTTT-GGCCGCAAGGGAtgatgtatggaggaaacatgggccctgaaataaaattggtctgaatttgaacatggcctttaccatttttttattactatggacaaattac-cctcattactgagcattggtttcttaatatataaactgggagtaataTC--CCCAATAAATAACAATGGGACATAGCAGGATGGGGTTGCCCTTTTCACCCTTTTCATCCCTCCTCTCACTCACT--GGATGAGAGTTTCTACACAATAATCAATTGGTGCTGTGCTGTTCTGTGTCACTTTGCATCTGCTCATGAGAGGATATTTTGTCTTTAAGATGCCTACTCTAAAGATATGAAGAGCTAGGAAAATGGTAATTGCTGCCCTTAAGCAAGCACTTGGTGCAGTGGCAGAACAAAGTTGGAATTTTGGGGTT-GAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31052540 472 + 173848474 AACCCTGGACATTCCTACACCTGAGGCCTCTTCAATGGCTGCTGCCAATGACTTT-GGCCGCAAGGGAtgatgtatggaggaaacatgggccctgaaataaaattggtctgaatttgaacatggcctttatcatttttttattactatggacaaattac-cctcattactgagcattggtttcttaatatataaactgggagtaataTC--CCCAATTAATAACAATGGGACATAGCAGGATGGGGTTGCCCTTTTCACCCTTTTCATCCCTCCTCTCACTCACT--GGATGAGAGTTTCTACACAATAATCAATTGGTGCTGTGCTGTGCTGTGTCACTTTGCATCTGCTCATGAGAGGATATTTTGTCTTTAAGATGCCTACTCTAAAGATATGAAGAGCTAGGAAAATGGTAATTGCTGCCCTTAAGCAAGCACTTGGTGCAGTGGCAGAACAAAGTTGGAATTTTGGGGTT-GGG
i panPan2.chr6             C 0 C 0
s calJac3.chr4              30754129 471 + 171630274 AACTCTGGACACTCTCACACATGAGGCCTTTTCAATGGCTGCTGCCAATGACTTTAGGCCACAAGGGATGTTGTAtgaagggaacatgggtcctgaaataaaactgatatgaatttgaacatggcctttaccacttttgtattactttagataagttacttctcattactgagctttggtttcttaatatttaaactgagagtaatatca-cccaA-TAATAACACTGGGACATAGCAGGATGGGGTTGCCCCTTTCACCTTTTCATTCCCTCCTCTCACTCACT--GGATAGGAGTTTCTACACAATAATCAATTGGTACTGTGCAGTGCTGTGTCATTTTGTATCAACCTATGAGAGGATATTTTGTCTTCAAGATGCCTACTCTAAAGACATGAAAAGCTGGGAAAA---TAATTGCTGCCCTTAAGCAA-CACTTGGTGCAGTGGCAGAACAAAGTTGGAATCTTGGGGTTAGGG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1189619 470 -   1771730 ATCTCTGGACACTCTCACACATGAGGCCTCTTTAATGGCTACTGCCAATGATTTTAGGCCACAAGGGATGCTGTATGAAGGGAACATGGGTCCTGAAATAAAACTGATATGAATTTGAACATGGCCTTTACCACTTTTGTATTACTTTGGACAAATTACTTCTCATTACTGAGCTTTGGTTTCTTAATACATAAACTGAGAGTAATATCA-CCCAATTAATAACACTGGGACATAGCAGGATGGGGTTGCCCCTTTCACCCTTTTCATCCCTCCTCTCACTCACT--GGATAGGAGTTTCTGCAGAATAATCAATTGGCACTGTGCAGTGCTGTGTCATTTTGTATCAACCTATGAGAGGATATTTTGTCTTCAAGATGCCTACTCTAAAGACATGAAGAGCTAAGAAAA---TAATTGCTGCCCTTAAGCAAGCATTTGGTGCAGTGGCAG---AAAGTTGGAATCTTGGGGTTAGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      382519 467 -    486031 AACTCTGGACACTCTCACACATGAGGCCTCTTCAGTGGCTGCTGCCAATGACTTTAGGCCATAAGGGAtgttgtatgaagggaacatgggtcctgaaataaaactgatctgaatttgaacatggcctttaccacttttgtattactttggacaaattgcttctcattactgagctttggtttcttaatacataaactgagagtaatatca-cccaATTAATAACACTGGGACATAGCAGGATGGGG-TGCCCCTTTCACCCTTTTCATCCCTCCTCTCACTCACT--GGATAGGAGTTTCTACACAATAATCAATCAGCACTGTGCAGTGCTGTGTCATTTTGTATCAACCTAGGAGAGGATATTTTGTCTTCAAGATGC-----CTAAAGACATGAAGAGCTAGGAAAT---TAATTGCTGCCCTTAAGCAAACACTTGGTGTAGTGGCAGAACAAAGTTGGAATCTTGGGGTTAGGG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550            613634 421 +  18854210 agccacaggcactgccTCACACAGGGCCTGCTGAATTCCTACTACCAATGACTTTAAGTCTCAAGAGATGAGGTGTGACAGAAACACGAGTTTTTGAATACAATTGCTCTGGATTTGGACA-----CTTACCACT----------CATGGACAAATTACCTATC---------------TTTCTTGATTTATAAACTGAGCATACTACCCTCCCAATTAGGGACACCAAGATGTAGCAGAATGGGGTTGCCCTTTTCACCCCTTTCAACCCTCTTCATACTCACTGGGGATGAGAGTTTCTACACAATAATCAATCACTGCTGTGCTGTGA-GTGACA--------------ATGAGAGCATATTT-----------TGCCTGCTCTAAGGACATGAAGAATCAGAAAAATGGGAATTGCTGCCTTTAA-CAAGCATTGGGTACAGCAGCAGAATAAAGCTACAATCTTGGGGTTAGG-
i otoGar3.GL873550         I 85020 I 929
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457  22 +    735854 I
e chlSab2.chr17             42106592  22 +  71996105 I
e cerAty1.NW_012002535v1      108975  22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509   0 + 170955103 I
e rheMac8.chr4             141479194   0 - 172585720 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=321732.000000
s hg38.chr6_GL000254v2_alt   1782834 245 +   4827813 GTAGACAAGGAAAGAGGGCTGCAGACTTAGGGAAGAAGAACACCTTGTTGGCCATGTGAGGAGCATCCAGCACTTGCTACAGTTAGTGGGAGCAAAACAGTACAGAGATAGGTAAATCATGCTGTGGACTGTGAGTATATTCTTGATCAGCC-----AGTGATTATTCCACTCTCTACTGCCTTTAATTGGAGATCTACATTAAG--------------CTacacacacaaacacacaca-----------caGCTTATCTGGGTAGGGATGAAT
s panTro5.chr6              30629034 245 + 175400573 GTAGACAAGGAAAGAGGGCTGCAGACTTAGGGAAGAAGAACACCTTGTTGGCCATGTGAGGAGCATCCAGCACTTGCTACAGTTAGTGGGAGCAAAACAGTACAGAGATAGGTAAATCATGCTGTGGACTGTGAGTATATTCTTGATCAGCC-----AGTGATTATTCCACTCTCTACTGACTTTAATTGGAGATCTACATTAAG--------------CTacacacacaaacacacaca-----------caGCTTATCTGGGTAGGGATGAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31053012 245 + 173848474 GTAGACAAGGAAAGAGGGCTGCAGACTTAGGGAAGAAGAACACCTTGTTGGCCATGTGAGGAGCATCCAGCACTTGCTACAGTTAGTGGGAGCAAAACAGTACAGAGATAGGTAAATCATGCTGTGGACTGTGAGTATATTCTTGATCAGCC-----AGTGATTATTCCACTCTCTACTGACTTTAATTGGAGATCTACATTAAG--------------CTacacacacagacacacaca-----------caGCTTATCTGGGTAGGGATGAAT
i panPan2.chr6             C 0 C 0
s calJac3.chr4              30754600 260 + 171630274 GTAGATAAGGAAAGAGGGTTGCAGACTTCGGGAAGGAGAACACCTTGTTCCCCACGTGAGGGACATCCAGCACGTGGTACAGTTAATGGGAGAAAAACAGTACAGAGATGTCTAAATCATGCTGTGGACTGTGGGTATATTCTTGACCAGCC-----AGTGATTATTTCACTATCTACTGAATTTAATTGGAGATCTACATTAAG----acacacacacacacacacacacacacacaca------cCAAACAGCTTATCTGGGCATGAATGAAT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1190089 264 -   1771730 GTAGATAAGGAAAGAGGGTTGCAGACTTCAGAAAGAAGAACATCTTGTTCCCCATGTAAGGGGCATCTAGCAAGCGCTACAATTAATGGGAGAAAAACAGTACAGAGATGTCTAAATCACGCTGTGGACTGTGGGTATATTCTTGACCAGCC-----AGTGATTATTTCACTGTCTATTGACTTTAATTGGAGATCTACATTAAGacacacacacacacacacacacacacacacacaca------cCGCACAGCTTATCTGGGCATGAACGAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      382986 270 -    486031 GTAGATAAGGAAAGAGGGTTGCAGACTTCAGGAAGGAGAACACCTTGTTCCCCCTGTGAGGGACATCCAGCACGCGCTACAATTAATGGGAGAAAAACAGTACAGAGATGTCTAAATCATGCTGTCGACTGTGGGTATATTCTTGACCAGCC-----AGTGATTATTTCACTGTCTACTGACTTGAATTGGAGATCTACAATAAGacacacacacacacacacacacacacacacacacacacacCCCGCACAGCTTATCTGGGCATGAATGAAT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550            614984 231 +  18854210 GTAGGCAAGAAAAGAGAGATGGAGATCCAGGAAGAGAAGCAACCTGGATGCCCATG--AGGTATACCCAGCATTCCCT---GACAATGGGAGGGGGACAGTATACACATGTCTAAACCATCCTCTGATCTGTGACTATCTTCCTGGCCAGCTCCAAGAGGG------------------GACTTCAATTAGAGAAACACATTAAG--------------CTATACACACATGCACTCTTA-------CTCACACATTCTCTGTGGATGGATGAAT
i otoGar3.GL873550         I 929 C 0
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457  22 +    735854 I
e chlSab2.chr17             42106592  22 +  71996105 I
e cerAty1.NW_012002535v1      108975  22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509   0 + 170955103 I
e rheMac8.chr4             141479194   0 - 172585720 I
e nomLeu3.chr1a             47781820   5 - 122973662 I
e gorGor5.CYUI01015528v1      556894 1645 +   2037526 I

a score=76430.000000
s hg38.chr6_GL000254v2_alt   1783079 36 +   4827813 AAGAAAACCGGTCCTTTTCACAAAGATCTGCAGCTG
s panTro5.chr6              30629279 36 + 175400573 AAGAAAACCGGTCCTTTTCACAAAGATCTGCAGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31053257 36 + 173848474 AAGAAAACCGGTCCTTTTCACAAAGATCTGCAGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      558539 36 +   2037526 aagaaaACCGGTCTTTTTCACAAAGATCTGCAGCTG
i gorGor5.CYUI01015528v1   I 1645 C 0
s calJac3.chr4              30754860 36 + 171630274 AAGAAAACTGGTCCTTTTTACAAGGATCTGCAGCTG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1190353 36 -   1771730 AAGAAAACTGGTCCTTTTCACAAGGATCTGCAGCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      383256 36 -    486031 AAGAAAACTAGTCCTTTTCACAAGGATCTGCAGCTG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550            615215 33 +  18854210 AAGAAAACC---CATTCTTACAAGGATCCATAGCCA
i otoGar3.GL873550         C 0 I 31109
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457 22 +    735854 I
e chlSab2.chr17             42106592 22 +  71996105 I
e cerAty1.NW_012002535v1      108975 22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509  0 + 170955103 I
e rheMac8.chr4             141479194  0 - 172585720 I
e nomLeu3.chr1a             47781820  5 - 122973662 I

a score=717191.000000
s hg38.chr6_GL000254v2_alt   1783115 373 +   4827813 AAATTCACATCATCTGCATGGTCCAAAATGGGAATCCACTGATGCTGTAAGTCCATCCAGCCTAGTGGAGCATAGTGTGGGCTAGATAAGGATGATATGAAATAATGAATGCAAAACACC-AGCACAGGAAGCGGAATATGGCACATGTGC-AAA-----------------------------------------------------------------------------------------ACACTGCCCATTCC------TTGTAAAGC-----CAAAA--------------------------------------TAGTATGTATTTATTTaaaggacctgggtcttcgagtcagacagacctggatatcctgggactg--ctctgatcagcatgacatacagaaagctatttgaggcttcatagagctcagttctttgtctgtaaatactttcttttgtgtgaaaattaaattaaatagcaatagggcttgtaacacatttgacacaa
s panTro5.chr6              30629315 373 + 175400573 AAATTCACATCATCTGCATGGTCCAAAATGGGAATCCACTGATGCTGTAAGTCCATCCAGCCTAGTGGAGCATAGTGTGGGCTAGATAAGGATGATATGAAATAATGAATGCAAAACACC-AGCACAGGAAGCGGAATATGGCACATGTGC-AAA-----------------------------------------------------------------------------------------AAACTGCCCATTCC------TTGTAAAGC-----CAAAA--------------------------------------TAGTATGTATTTACTTaaaggacctgggtcttcgagtcagacagacctggatatcctgggactg--ctctgatcagcatgacatacagaaagctatttaaggcttcatagagctcagttctttgtctgtaaatactttcttttgtgtgaaaattaaattaaatagcaatagggcttgtaacacatttgacacaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31053293 373 + 173848474 AAATTCACATCATCTGCATGGTCCAAAATGGGAATCCACTGATGCTGTAAGTCCATCCAGCCTAGTGGAGCATAGTGTGGGCTAGATAAGGATGATATGAAATAATGAATGCAAAACACC-AGCACAGGAAGCGGAATATGGCACATGTGC-AAA-----------------------------------------------------------------------------------------AAACTGCCCATTCC------TTGTAAAGC-----CAAAA--------------------------------------TAGTATGTATTTACTTaaaggacctgggtcttcgagtcagacagacctggatatcctgggactg--ctctgatcagcatgacatacagaaagctatttaaggcttcatagagctcagttctttgtctgtaaatactttcttttgtgtgaaaattaaattaaatagcaatagggcttgtaacacatttgacacaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      558575 373 +   2037526 AAATTCACATTATCTGCGTGGTCCAAAATGGGAATCCTCTGATGCTGTAAGTCCATCCAGCCTAGTGGAGCATAGTGTGGGCTAGATAAGGATGATATGAAATAATGAATGCAAAACACC-AGCACAGGAAGCGGAATATGGCACATGTGC-AAA-----------------------------------------------------------------------------------------AAACTGCCCATTCC------TTGTAAAGC-----caaaa--------------------------------------tagcatgtatttacttaaaggacctgggtcttcgagtcagacagacctggatatcctgggactg--ctctgatcagcatgacatacagaaagctatttaaggcttcatagagctcagttctttgtctgtaaatactttcttttgtgtgaaaattaaattaaatagcaatagcgcttgtgacacatttgacacaa
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4              30754896 372 + 171630274 AAACACACATCATCTGGCTGGTCCAAAATGGGAATGCACTGATGCTGTAAGTCCATCCAGCCTAGTGG-GCATAGTCT-GGCTAGAtaaggatgatatgaaataatgaatgcaaaacacctagcacagGAAGAAGAATATGGCACATGTGC-AAA-----------------------------------------------------------------------------------------AAACTGCCCATTCC------TTGTAAAGC-----CAGAA--------------------------------------TAGTATGTATTTACATATaggacctgagtcttcaaatcagacagacctggatatcctgggactg--ttctgatcagcacaacatagagaaagctatttaaagcttcacagatctcggttccttgtctgtaaaTACTTTGTCTTATATGAAAATTAAATACAATAGCAATAGCACTTGTAACATGTTTAACCCAA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1190389 373 -   1771730 AAATACACATCATCTGGCTAGTCCAAAATGGGAATGCATTGATGCTGTAAGTCCATCCAGCCTAGTGG-GCATAGTCTGGGCTAGATAAGGATGATATGAAATAATGAATGAAAAACACCTAGCACAGGAAGAAGAATATAGCACATGTGCAAAA-----------------------------------------------------------------------------------------AAACTGCCCATTCC------TTGTAAAGC-----CAAAA--------------------------------------TAGTATGTATTTACATaaaggacctgagtcttcaaatcaggcagacctggatatcctgggactg--ctctgatcagcatgacatagagaaagctatttaaagcttcttagagctcagttccttgtctgtaaaTAC-TTGCCTTATATGAAAATTAAATACAGTAGCAATAGCGCTTGTAACATGTTGAACCCAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      383292 369 -    486031 AAATACACATCATCTGGCTGGTCCAAAATGGGAATGCACTGATGCTGTAAGTCCATCCAGCCTAGTGG-GCATAGTCTGGGCTAGAtaaggatgatatgaaataatgaatgcaaaacacctagcacagGAAGAAGAATATGGCACATGTGC-AAA-----------------------------------------------------------------------------------------AAACTGCCCATTCC------TTGTAAAGC-----CAAGA--------------------------------------TAGTATGCATTCACATaaaggacctgagtcttcaaatc------acctggatatcctgggactgctctctgatcagcatgacatagagaaagctatttaaagcttcacagagctcggttccttgtctgtcaatactttgtcttatatgaaaattaaatacaatagcaatagcgcttgtaacatgtttaacccaa
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550            646357 502 +  18854210 AAATTCATGTCATCTGAATGGTCCAACATGGGAATGCACTGATGCTGTAAGTCCCTCTAGCCTCATGGGGCAAAATCTGGGCTATATGAGG-TGATATGAGATCATCAGTGGAAAACACCTGGCACAGG-CTTAGAATATGGCAGATGTGC-AAAGGCTGTGCCTGCTCCAAAATCAGATTTGTCCCTAAAGTCACCATACGTAAGGAAAATGGGAAATTATAGCTACATGTGTCTTTCTATATAAAATATTCACTTCAAAATTTTATAAAATATTTACAAAATAGTCCCTATGTGTTGGCCTCCTCTTTGTAAATTTTTGTAGTATATCTTTATATAAAGGGCCTGGG-CTTGGGATCAGACAGACCTACACAC------ACTG--CCCAGACCAGGATGACACAGGGCAAGCTGCCCAAAGCTTCACAGAGTTCAGCTACTTGTCTATAAATAGTTTGTCTT-TGTAAGAATGAAATAAAAGAGCAACAGTATGTGTAACACATTTAACACAA
i otoGar3.GL873550         I 31109 C 0
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457  22 +    735854 I
e chlSab2.chr17             42106592  22 +  71996105 I
e cerAty1.NW_012002535v1      108975  22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509   0 + 170955103 I
e rheMac8.chr4             141479194   0 - 172585720 I
e nomLeu3.chr1a             47781820   5 - 122973662 I

a score=767392.000000
s hg38.chr6_GL000254v2_alt   1783488 304 +   4827813 ttgctggtacTGCAATTTGTGGTGCTAATGACAACGTTAGTGATGATGATTTTCTTCTGTAGGGCACCATGTTCTCTAGGGAATGGTGAATTCTAGAGGCCAAGTCTTACCCTAAAGTTCCATGTCACCCTATGAAAAAGCATTTGGGATAAAACAGGCTTTTGAGTCCCTCTAAAAACAGAGCATGTGAGTAGTTGGTATGGGGATCCGAGTTGGGTTGGGGAAAGAGGCAATTATTTTTATTCCCTTCAG-TATGTTCTATCCTCTCTGATATTTCTAAATTATCTACACTTTCTCCATCAAC
s panTro5.chr6              30629688 304 + 175400573 ttgctgatacTGCAATTTGTGGTGCTAATGACAACGTTAGTGATGATGATTTTCTTCTGTAGGGCACCATGTTCTCTAGGGAATGGTGAATTCTAGAGGCCAAGTCTTACCCTAAAGTTCCATGTCACCCTATGAAAAAGCATTTGGGATAAAACAGGCTTTTGAGTCCCTCTAAAAACAGAGCATGTGAGTAGTTGGTATGGGGATCCGAGTTGGGTTGGGGAAAGAGGCAATTATTTTTATTCCCTTCAG-TATGTTCTATCCTCTTTGATATTTCTAAATTATCTACACTTTCCCCATCAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31053666 304 + 173848474 ttgctggtacTGCAATTTGTGGTGCTAATGACAACGTTAGTGATGATGATTTTCTTCTGTAGGGCACCATGTTCTCTAGGGAATGGTGAATTCTAGAGGCCAAGTCTTACCCTAAAGTTCCATGTCACCCTATGAAAAAGCATTTGGGATAAAACAGGCTTTTGAGTCCCTCTAAAAACAGAGCATGTGAGTAGTTGGTATGGGGATCCGAGTTGGGTTGGGGAAAGAGGCAATTATTTTTATTCCCTTCAG-TATGTTCTATCCTCTTTGATATTTCTAAATTATCTACACTTTCCCCATCAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      558948 304 +   2037526 ttgctggtacTGCAATTTGTGGTGCTAATGACAACGTTAGTGATGATGATTTTCTTCTGTAGGGCACCATGTTCTCTAGGGAATGGTGAATTCTAGAGGCCAAGTCTTACCCTAAAGTTCCATGTCACCCTATGAAAAAGCATTTGGGATAAAACAGGCTTTTGAGTCCCTCTAAAAACAGAGCATGTGAGTAGTTGGTATGGGGATCCGAGTTGGGTTGGGGAAAGAGGCAATTATTTTTATTCCCTTCAG-TATGTTCTATCCTCTCTGATATTTCTAAATTATCTACACTTTCCCCATCAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75190601 304 + 122973662 TTACTGGTACTGCAATTTGTGGTGCTAATGACAACATTAGTGATGATGATTTTCTTCTGTAGGGCACCATGTTCTCTAGGGAATGGTGAATTCTAGAGGCCAAATCTTACCCTAAAGTTCCATGTCACCTTATGAAAAAGCATTTGGGATAAAACAGGCTTTTGAGTCCCTCTAAAAACACAGCATGTGAGTAGTTGCTATGGGGACCCGAGTTGGGTTGGGGAAAGAGGCAATTATTTTTATTCCCTTCAG-TATGTTCTATCCTCTCTGATATTTCTAAATTATCTACACTTTCCCTATCAAC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4              30755268 302 + 171630274 TTGATGGTACTGCAATTGGTGGGGCCAATTATGACATCAGTGATGATGATTTTCTTCTCTAGGCCACCATGTTCTCTAAAGAATGGTGAATTCTAGAAGCCAAA-CTTACCCTAAAGTTCCCTGTCACCCTATGGGAAAGCATTTGGGATAAAACAGGCTTTTGAGT-CCTCTCAGATCCCAGCATGTGAGTAGTTGATAGAGGGATCCAAGTTGGGTTGGGGAAAGAGGCAATCATTTTCATTCCCTTCAG-TATGCTCTGTCCTCTCTGATAGCTCTAAATTATCTACACTTTCCCCATCGGC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1190762 303 -   1771730 TTGATGGTACTGCAATTGGTGGGGCTAATGATGACATCAGTGATGACAATTTTCTTCTCTAGGCCACCATGTTCTCTAAAGAATGGTGAATTCTAGAAGCCAAA-CTTACCCTAAAGTTCCCTGTCAGCCTATGGGAAAGCATTTGGGATAAAACGGGCTTTTGAGT-CCTCTCAGAACCCAGCATGTGAGTACTTGGTAAAGGGATCCAAGTTGGGTTGGGGAAAGAGGCAATCATTTTTATTCCCTTCAGTTATGCTCTGTCCTCTCTGATCACTCTAAACTATCTACACTTTCCCCATCGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      383661 301 -    486031 ttgatggtacTGCAATTGATGGGGCTAATGATGACATCAGTGGTGACAATTTTCTTCTCTTGGCCACCATGTTCTCTAAAGAATGGCGAATTCTAGAAGCC-AA-CTTACCCTAAAGTTCCCTGTCAGCCTATGGGAAAGCATTTGGGATAAAACAGGCTTTTGAGT-CCTCTCAGATCCCAGCATGTGAGTAGTTGGTAGAGGGATCCAAGTTGGGTTGGGGAAAGAGGCAATCATTTTTATTCCCTTCAG-TATGCTCTGTCCTCTCTCATAGCTCTAAATTATCTACACTTTCCCCATCGAC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550            646859 271 +  18854210 CCGCTGGCACTGCAAT---------------CAATAGCAGTGATCATGATTTTCTTTTCTAGGGCACCAACTCATCT----CATGGAGGTTGCTGGGAGCCAAGCCTTACCCTAAAGTTCCGTGTCATCCTATGGGAAAGGATTTTGGATAAAACAGGCTTTTGAGTCCCTC---------GGCATGTGTATGACT----TAGGGACAAGGATTGCAGAGGGGAAAGAGGCTTTTACATTTATTCCCTTTGG-TCCTTTCTGTTCTGTCTGTAATTTCTAAATTATCTAC-TTTCCCCCATGTGA
i otoGar3.GL873550         C 0 I 281
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457  22 +    735854 I
e chlSab2.chr17             42106592  22 +  71996105 I
e cerAty1.NW_012002535v1      108975  22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509   0 + 170955103 I
e rheMac8.chr4             141479194   0 - 172585720 I

a score=200570.000000
s hg38.chr6_GL000254v2_alt   1783792 71 +   4827813 ATTCCCTTTTTAATTTGTAAATATAACTTTTTCTCATTATAATGTAATATATATTCACTGCAGAAAAATTA
s panTro5.chr6              30629992 71 + 175400573 ATTCCCTTTTTAATTTGTAAATATAACTTTTTCTCATTATAATGTAATATATATTCACTGCAGAAAAATTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31053970 71 + 173848474 ATTCCCTTTTTAATTTGTAAATATAACTTTTTCTCATTATAATGTAATATATATTCACTGCAGAAAAATTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      559252 70 +   2037526 ATT-CCTTTTTAATCTGTAAATATAACTTTTTGTCATTATAATGTAATATATATTCACTGCAGAAAAATTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75190905 71 + 122973662 GTTCCCTTTTTAATTTGTAAATATAACTTTTTCTCATTATAATGTAATGTATATTCACTGCAGAAAAATTA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4              30755570 71 + 171630274 ATTTCCTTTTTAATTTGTAAATATAACTTTTTCTGATTATAATGTAATATAGGTTCACTGCAGACAAATTA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1191065 71 -   1771730 ATTTCCTTTTTAATTTGAAAATATAACTTTTTCTGATTATAATGTAATATATATTCACTGCAGACAAATTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      383962 71 -    486031 ATTTCCTTTTTAGTTTGTAAATATAACTTTTCCTGATTATAATGTAATATATATTCACTGCAGACAAATTA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550            647411 71 +  18854210 ATTCCATTTTTAATTTTTAAACATAACTTTTTCTAATCACAATGCAATCTATATTCACTGCAGAAAAAGTA
i otoGar3.GL873550         I 281 I 1
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457 22 +    735854 I
e chlSab2.chr17             42106592 22 +  71996105 I
e cerAty1.NW_012002535v1      108975 22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509  0 + 170955103 I
e rheMac8.chr4             141479194  0 - 172585720 I

a score=267648.000000
s hg38.chr6_GL000254v2_alt   1783863 170 +   4827813 CCAAATATTTCAAATGATCAATTACAAATTTAAACTATCCCATGATCCTTACAGCAGAGATATGTGGTTTCATTTCCTTCTAGTCAGTTATATATTTTCCTGCTGCTGCCCCATTACTGGATGTGTGCCATtctctctctctctctatctctctctctctctctctctct
s panTro5.chr6              30630063 146 + 175400573 CTAAATATTTCAAATGATCAATTACAAATTTAAAGTATCCCATGATCCTTACAGCAGAGATTTGTGGTTTCATTTCCTTCTAGTCAGTTATATATTTTCCTGCTGCTGCCCCATTACTGGATGTGTGCCATtctctctctctctct------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31054041 146 + 173848474 CTAAATATTTCAAATGATCAATTACAAATTTAAAGTATCCCATGATCCTTACAGCAGAGATTTGTGGTTTCATTTCCTTCTAGTCAGTTATATATTTTCCTGCTGCTGCCCAATTACTGGATGTGTGCCATtctctctctctctct------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      559322 154 +   2037526 CTAAATATTTCAAATGATCAATTACAAATTTAAACTATCCCATGATCCTTACAGCAGAGATATGTGGTTTCATTTCCTTCTAGTCAGTTATATATTTTCCTGCTGCTGCCCCATTACTGGATGTGTGCCATtctctctctctctct----------------ctctctct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75190976 146 + 122973662 TTAAGTGTTTCAAATGATCAATTACAAATTTAAACTATCCCATGATCCTTACAGCAGAGATATGTGGTGTCATTTCCTTCTAGTCAGTTATATATTTTCCTGCTGCTGCCCCATTACTGGATCTGTGCCATtctctctctctctct------------------------
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4              30755641 124 + 171630274 TTAACTGTT--------TAAATTAC------AAACGATTCCGTAATCCTTACAGCAGACATAGATGGTTTCATTTCCTTCTAGTCAGTTACATATTTTCCTGCTGCTGCCCCATTACTGGATCTGTAC--------CTCTCTCTCT------------------------
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1191136 128 -   1771730 TTAACTGTT--------TAAATTACAAATTTAAACTATCCCATAATCCTTACAGCAGACATAGGTTGTTTCATTTCCTTCTAGTCAGTTATATAGTTTCCTGCTGCTGCCCCATTACTGGATCTGTAC----------CTCTCTCT------------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      384033 126 -    486031 TTAACTGTT--------TAAATTACAAATGTAAACTATCCCATAATCCTTACCGCAGACATAGGTGGTTTCATGTCCTTCTAGTCAGTTATGTATTTTCCTGCTGCTGCCCCATTACTGGATCTGTAC------------CTCTCT------------------------
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550            647482   1 +  18854210 I
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457  22 +    735854 I
e chlSab2.chr17             42106592  22 +  71996105 I
e cerAty1.NW_012002535v1      108975  22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509   0 + 170955103 I
e rheMac8.chr4             141479194   0 - 172585720 I

a score=488145.000000
s hg38.chr6_GL000254v2_alt   1784033 206 +   4827813 ctctctctctctctctcCCCCACCCCCaaagttatgaccacagacctcagtggcccacagccctgcactctccaaatgccatctcccaggtcagttcactcttacaattcctcaggggg-ctgtttctcactttgttctctgccctcacatccctccactccttccacactccctatttttaggttatacatttatttctctttcac
s panTro5.chr6              30630209 199 + 175400573 --------ctctctctctcCCACCCCCaaagttatgaccacagacctcagtggcccacagccctgcactctccaaatgccatctcccaggtcagttcactcttaccattcctcaggggggctgtttctcactttgttctctgccctcacatccctccactccttccacactccctatttttaggttatacatttatttctctttcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31054187 200 + 173848474 ------ctctctctctctcCCACCACCaaagttatgaccacagacctcagtggcccacagccctgcactctccaaatgccatctcccaggtcagttcactcttaccattcctcaggggg-ctgtttctcactttgttctctgccctcacatccctccactccttccacactccctatttttaggttatacatttatttctctttcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      559476 206 +   2037526 gtctctctctctctctctcCCACCCGCaaagttatgaccacagacctcagtggcccacagccctgcactctccaaatgccatctcccaggtcagttcactcttacaattcctcaggggg-ctgtttctcactttgttctctgccctcacatccctccactccttccacactccctacttttaggttatacatttatttctctttcac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75191122 177 + 122973662 --------------ctctcCCGCCCCCaaagttataaccacagacctcagtggcccacagccctgcactctccaaatgccatctcccaggtcagttcactctta----------------caatttctcactttgttctctgccgtcacatccctccactccgtccacactccctacttttaggttatacatttatttctctttcac
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4              30755765 192 + 171630274 --------------CTCTCCCACCCCCaaagttatgaccacggacctcaatggcccatagccctgcacacttcagaagctatctcccaggtcggtttgctctcacagctcctcaggggg-ctatttctcactttattctctgtcctcacatccctccactctttccacactcactacttttaagtgatacagttatttctctttcac
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1191264 192 -   1771730 --------------CTCTCCCACCCCCaaagttatgaccacggacctcagtggcccacagccctgcacactccagatgccatctcccaggtcagttcactctcacaactctttaggggt-ctatttctcactttattctctgtcctcacatccctccactctttccacactccctacttttaagtgatacatttatttctctttcac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      384159 192 -    486031 --------------CTCTCCCACCCCCaaagttatgaccacagacctcagtggcccacagccctgcacactccagatgccatctcccaggtcggttcactctcacaactcctcaggggg-ctatttctcactttattctctgtcctcacatccctccactctttccacactccctacttttaagtgatacatttatttctctttcac
i aotNan1.NW_018496901v1   C 0 M 1419
s otoGar3.GL873550            647483 173 +  18854210 ----CTCGCTCGCTCTCTCT------------------------CCTCAGTGGCACCCAGCCCTGCACTCTCTAGAT-TCAAAtctctggctagttcaccctgtcacctcctgaagggg-ctagttttcactttctcctcgctcctcacatcccta----tccttcatactccccacttctagatgattgatttatttctctttcac
i otoGar3.GL873550         I 1 C 0
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457  22 +    735854 I
e chlSab2.chr17             42106592  22 +  71996105 I
e cerAty1.NW_012002535v1      108975  22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509   0 + 170955103 I
e rheMac8.chr4             141479194   0 - 172585720 I

a score=615004.000000
s hg38.chr6_GL000254v2_alt   1784239 298 +   4827813 gcaggaaaaaaaggaggacccaggtgagaaatgcatcaccatcccattactatccccaaatctgcacttgtatcctcagccttcccaccagtgatgatggatgatccccgct---cctaagaccacccctgcactcaagcataagatcaatcct-tccttcccctatatcatcaatttccactctctactggccca-tcatttctacaggcagacgtgctgtaatatctcccccc----aaaaaaacaaacaaaactggactaaacaaatcaaaacaaaaTCTTCCCATCGAAATTTATCCCTTGAT
s panTro5.chr6              30630408 298 + 175400573 gcaggaaaaaaaggaggacccaggtgagaactgcatcaccatcccattactatccccaaatctgcacttgtatcctcagccttcccaccagtgatgatggatgatccccact---cctaagaccacccctgcactcaagcataagatcaatcct-tccttcccctatatcatcaatttccactctctactggccca-tcatttctacaggcagacgtgctgtaatatctcccccc----aaaaaaacaaacaaaactggactaaacaaatcaaaacaaaaTCTTCCCATCGAAATTTATCACTTGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31054387 298 + 173848474 gcaggaaaaaaaggaggacccaggtgagaactgcatcaccatcccattactatccccaaatctgcacttgtatcctcagccttcccaccagtgatgatggatgatccccgct---cctaagaccacccctgcactcaagcataagatcaatcct-tccttcccctatatcatcaatttccactctctactggccca-tcatttctacaggcagacgtgctgtaatatctcccccc----aaaaaaacaaacaaaactggactaaacaaatcaaaacaaaaTCTTCCCATCGAAATTTATCACTTGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      559682 296 +   2037526 gcagg-aaaaaaggaggacccaggtgagaactgcatcaccatcccattactatccccaaatctgcacttgtatcctcagcctt-ccaccagtgatgatggatgatccccact---cctaagaccacccctgcactcaagcataagatcaatcct-tccttcccctatatcatcaatttccactctctactggccca-tcatttctacaggcagacatgctgtaatatctccccct----aaaaaaacaaacaaaactggactaaacaaatcaaaacaaaaTCTTCCCATCGAAATTTATCACTTGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75191299 302 + 122973662 acaggaaaaaaaggaggacccaggtgagaactgcatcaccatcccattactatccccaaatctgcacttgtatcctcagccttcccagcagtgatgatggatgatccccgct---cctaagaccacccctgcactcaagcataagatcaatcct-tccttcccctatatcatcaatttccactctctactggccca-tcattcctacatgcagacatgctgtaatatctccccccccaaaaaaaaacaaacaaaactggacaaaacaaatcaaaacaaaacCTTCCCATCGAAATTTACCACTTGAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4              30755957 293 + 171630274 -tcggaaaaaaaggaggactcaggagagaactgcatcaccatcccactactatagctaaatctgcacttgtatcctcagacttcccaccagtgatgatggatggtccccgct---cctaagaccacccctgcactcaggtagaagatcagcccc-tccttcctctatatcatcaatttccactctctactggccca-tcattcctgcatgcagacatgctgtaatatctcc--------caaaaaacaaaCAAAACTGGACTAAACAAGTCAAAACAAAATCTTCCCATTGAAATCCAACACCTGAT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1191456 291 -   1771730 -tcagaaaaaaaggaggactcaggtgagaactgcatcaccatcccactgctatccctaaatctgcacttgtatcctcagacttcccaccagtgatgatggatggtccctgct---cctaagaccacccccacactcag--agaagatcagctcc-tccttcctctatatcatcaatttccactctctactgaccca-tcattcctgcatgcagacacgctgtaatatctcc--------caaaaaacaaacaaaactggactaaacaaatcaaaacaaaaTCTTCCCACTGAAATCCAATACCTGAT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550            647656 291 +  18854210 -------tcagaaaaggactcagatgagaactgcatcatcatccctccacaacctccacagccacacctgtcttctcagccttcccaccagtgatgatgggtggccctcttcttgtctgaggccacccctgcactaaggcacaagattgggcctctcccttccctatatgatcaatttaca--ctctactggttcattcattcctgcattcaaacatgctggaacatctcca-------aaggaaacaaaCACAATTAGACTAAACAAATCAAAACAAAATCCTACCATAAAAATCTATCACCTGAT
i otoGar3.GL873550         C 0 I 262
e aotNan1.NW_018496901v1      384351 1419 -    486031 M
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457  22 +    735854 I
e chlSab2.chr17             42106592  22 +  71996105 I
e cerAty1.NW_012002535v1      108975  22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509   0 + 170955103 I
e rheMac8.chr4             141479194   0 - 172585720 I

a score=2800.000000
s hg38.chr6_GL000254v2_alt   1784537 2 +   4827813 CT
s panTro5.chr6              30630706 2 + 175400573 CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31054685 2 + 173848474 CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      559978 2 +   2037526 CT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75191601 2 + 122973662 CT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4              30756250 2 + 171630274 CC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1191747 2 -   1771730 CC
i cebCap1.NW_016107755v1   C 0 C 0
e otoGar3.GL873550            647947 262 +  18854210 I
e aotNan1.NW_018496901v1      384351 1419 -    486031 M
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457 22 +    735854 I
e chlSab2.chr17             42106592 22 +  71996105 I
e cerAty1.NW_012002535v1      108975 22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509 0 + 170955103 I
e rheMac8.chr4             141479194 0 - 172585720 I

a score=128381.000000
s hg38.chr6_GL000254v2_alt   1784539 62 +   4827813 CTGATCCCATGTCTCCCTGCAACTACTGCCCTATACTATGGCAGTCTTCATAGGACAATCTC
s panTro5.chr6              30630708 62 + 175400573 CTGATCCCATGTCTCCCTGCAACTACTGCCCTATACTATGGCAGTCTTCATAGGACAATCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31054687 62 + 173848474 CTGATCCCATGTCTCCCTGCAACTACTGCCCTATACTATGGCAGTCTTCATAGGACAATCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      559980 62 +   2037526 CTGATCCCATGTCTCCCTGCAACTACTGCCCTATACTATGGCAGTCTTCATAGGACAATCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75191603 62 + 122973662 CTGATCCCATGTCTCCCTGCAACTACTGCCCTATACTATGGCACTCTTCATAGGACAATCTC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4              30756252 62 + 171630274 CTGATCCCATGTCTCCCTCCAGTTACTGCCCTATTCTATGGCACTCCTCATAGGACAATCTC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1191749 61 -   1771730 CTGATCCCATGTCTCCCTCCC-TTACTGCCCTATTCTATGGCACTCCTCATAGGACAATCTC
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550            648209 60 +  18854210 CTGATCC--TGTTTCACTCCAACTGATGCCCTATTCAATGACATTCCTTATAAGAACATTTC
i otoGar3.GL873550         I 262 I 2352
e aotNan1.NW_018496901v1      384351 1419 -    486031 M
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457 22 +    735854 I
e chlSab2.chr17             42106592 22 +  71996105 I
e cerAty1.NW_012002535v1      108975 22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509  0 + 170955103 I
e rheMac8.chr4             141479194  0 - 172585720 I

a score=291220.000000
s hg38.chr6_GL000254v2_alt   1784601 185 +   4827813 TGAGTCTATTCTTCATGTAGTCTTTTGAAACATTGCATTTTTTGTTGTTTGTTTGtttgtttgtttttttg----------------atacggggtctccttgtgttgccctggctggtcttgaactcctgggctcaagcaattctctttccttagcctccaaagcactaggattataggcttgagccaccacacttggcc
s panTro5.chr6              30630770 201 + 175400573 TGAGTCTATTCTTCATGTAGTCTTTTGAAACATTGCATTTtttgttgtttgtttgtttgtttgtttgtttgtttgtttgtttgtttgATacggggtctccttgtgttgccctggctggtcttgaactcctgggctcaagcaattctctttccttagcctccaaagcactaggattataggcttgagccaccacacttggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31054749 189 + 173848474 TGAGTCTATTCTTCATGTAGTCTTTTGAAACATTGCATTTtttgttgtttgtttgtttgtttgtttgtttg------------tttgATacggggtctccttgtgttgccctggctggtcttgaactcctgggctcaagcaattctccttccttagcctccaaagcactaggattataggcttgagccaccacacttggcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      560042 177 +   2037526 TGAGTCTATTCTTCATGTAGTCTTTTGAAACATTGCATTTTTTGTTGtttgtttgtttgtttg------------------------atacggggtctccttgtgttgccctggctggtcttgaactcctgggctcaagcaattctctttccttagcctccaaagcactaggattataggcttgagccaccacacttggcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75191665 177 + 122973662 TGAGTCTATTCTTCGTGTAGTCTTTTGAAACATTGCATTTTTTGTTGtttgtttgtttgtttg------------------------atacagggtctctttgtgttgccctggctggtcttgaactcttgggctcaagcaattctcttcccttagcctccaaagcactaggattataggcttgagccaccacacttggcc
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4              30756314 166 + 171630274 TGAGTCTA-------TGTAGTCTTTTGAAACATTGCATTTTTTGTTGtttatttgtttgtttg------------------------agatggggtctccttgtgttgcccaggctggtcttgaactcctgggatcaagcgactctctttcctca---tccaaagcacta-gattacaggattgagccatcacacttggcc
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1191810 169 -   1771730 TGAGTCTA-------TGTAGTCTTTTGAAATATTGCATTTTTTGTTGtttatttgtttgttgg------------------------agatggggtctccttgtgttgcccaggctggtcttgaactactgggatcaagcgactctctttcctcatcctccaaaacacta-gattacaggcttaagccatcacacttggcc
i cebCap1.NW_016107755v1   C 0 C 0
e otoGar3.GL873550            648269 2352 +  18854210 I
e aotNan1.NW_018496901v1      384351 1419 -    486031 M
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457  22 +    735854 I
e chlSab2.chr17             42106592  22 +  71996105 I
e cerAty1.NW_012002535v1      108975  22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509   0 + 170955103 I
e rheMac8.chr4             141479194   0 - 172585720 I

a score=608998.000000
s hg38.chr6_GL000254v2_alt   1784786 297 +   4827813 TGATAGTATAATGTTCTTACActttttctttcttttttgcaaacatttttccattttattatgacttttgtcttccaaattatctaatgaattgttcat--------------------------ttctatgattctgtaatcacatttttaatttccagag--------------------------------------------------------ctcgttcttgtgtataattttacataaatgagttcctatttcataaatgccacttattttcttacatcctttatatattattgatAATAGTAGCAGGGGACTTGTTGGGTCTCCTTGTTATCTTCTTTCACGATATTATGAAATTTTCTCTCAGAATTCAT
s panTro5.chr6              30630971 297 + 175400573 TGATAGTATAATGTTCTTACACTTTTTCTTTCTTTTTTGTAAACATTTTTCCATTTTATTATGACTTTTGTCTTCCAAATTATCTAATGAATTGTTCAT--------------------------TTCTATGATTCTGTAATCACATTTTTAATTTCCAGAG--------------------------------------------------------CTCGTTCTTGTGTATAATTTTACATAAATGAGTTCCTATTTCATAAATGCCACTTATTTTCTTACATCCTTTATATATTATTGATAATAGTAGCAGGGGACTTGTTGGGTCTCCTTGTTATCTTCTTTCATGATATTATGAAATTTTCTCTCAGAATTCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31054938 297 + 173848474 TGATAGTATAATGTTCTTACACTTTTTCTTTCTTTTTTGCAAACATTTTTCCATTTTATTATGACTTTTGTCTTCCAAATTATCTAATGAATTGTTCAT--------------------------TTCTATGATTCTGTAATCACATTTTTAATTTCCAGAG--------------------------------------------------------CTCGTTCTTGTGTATAATTTTACATAAATGAGTTCCTATTTCATAAATGCCACTTATTTTCTTACATCCTTTATATATTATTGATAATAGTAGCAGGGGACTTGTTGGGTCTCCTTGTTATCTTCTTTCATGATATTATGAAATTTTCTCTCAGAATTCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      560219 297 +   2037526 TGATAGTATAATGTTCTTACACTTTTTCTTTCTTTTTTGCAAACATTATTCCATTTTATTATGACTTTTGTCTTCCAAATTATCTAATGAATTGTTCAT--------------------------TTCTATGATTCTGTAATCACATTTTTAATTTCCAGAG--------------------------------------------------------CTCGTTCTTGTGTATAATTTTACATAAATGAGTTCCTATTTCATAAATGCCACTTATTTTCTTACATCCTTTATATATTATTGATAATAGTAGCAGGGGACTTGTTGGGTCTACTTGTTATCTTCTTTCACGATATTATAAAATTTTCTCTCAGAATTCAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75191842 297 + 122973662 TGATAGTATAATGTTCTTACACTTTTTCTTTCTTTTTTGCAATCATTATTCCAATTTATTATGACTtttatcttctaaattatctaatgaattattcat--------------------------ttctatgattctgtaatcatatttttaatttccagag--------------------------------------------------------cttgttcttgtGTATAATTTTACATAAATGAGCTCCTATTTCATAAATGCCACTTATTTTCTTACATCCTTTATATATTATTGATAATAGTAGTAGGGGACCTGTTGGGTCTCCTTGTTATCTTCTTTCACGATATTATGAAATTTTCTCTCAGAATTCAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4              30756480 290 + 171630274 TGATAGTATAATGTTTTTACACTTTTTT-------TTGGCAATCATTATTCCATTTTATTATTACTTTTATCTTCCAAATCATCTAATGAATTATTCAT--------------------------TTCTATGATTCTATGATCATATTTTTAATTTCCAGAG--------------------------------------------------------CTTGTTCTTGTGCATAATTTTACATAAATGGGTTCCTATTTCATAAATGCCACTTATTTTCTTACATCCTTTATATATTATTGATAATAGTGGTAGGGAACCTGTTGGATATCCTTGTTACCCCCTTTCACAATATCATGAAATTTTCTCCCAGAATCCTT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1191979 290 -   1771730 TGATAGTATAACGTTTCTACACTTTTTC-------TTGACAATCATTATTCCATTTTATTATTACTTTTATCTTCCAAATAATCTAATTAATTATTCAT--------------------------TTCTATGATTCTATGATTATATTTTTAATTTCTAGAG--------------------------------------------------------CTTGTTCTTGTGCATAATTTTACATAAATGGGTTCCTATTTCATAAATGCCACTTATTTTCTTACATCCTTTATATATTATTGATAATAGTGGTAGGGAACCTGTTGGATATCCTTGTTACTTCCTTTCATGATATCATGAAATTTTCTCCCAGAATTCAT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550            650621 378 +  18854210 tgatagtacaatattcttattttttttctttcctttttgcaattactattccattttgtcaggacttttgcctttccattcatctattgcattactcatttctatgattcattcatttctatcacttctatgattctgtaagcatagttttaatttccagagtttgttcttatCATTTCTATGATTCTCTAATCATACTTTTAACTTCTAGAATTTTTCTTGTTCTTGTATATAATTTTACATAAATGTGTCCCTATGTCATACATACTATATGTTTTCTAATGTCTTTTGTATATGATAGTTCATAGTGGT-GGGTACCAGTTGGGTCTCTTTGTCATCTGCTTTCACTGTATCATGAAACTGTCTCTCAAAATTTAG
i otoGar3.GL873550         I 2352 I 280
e aotNan1.NW_018496901v1      384351 1419 -    486031 M
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457  22 +    735854 I
e chlSab2.chr17             42106592  22 +  71996105 I
e cerAty1.NW_012002535v1      108975  22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509   0 + 170955103 I
e rheMac8.chr4             141479194   0 - 172585720 I

a score=2330733.000000
s hg38.chr6_GL000254v2_alt   1785083 1216 +   4827813 AAAT---GTAGTGGTTTCACATTTATCTTGGTAATTT----TTGCTAAATGTCCGTCTCTCTCATGACAGTGCAAGCTCCATATCATCAAGATCTTAC--TTTAGCTCTTCTTCTATCTTCAATGTCTAGCTAATATCTTGATTCA-------CCTTGAAATATACACCGGATGATGGACTTTAGTGTGGTGTGGGCAGTGAAGTCACACATGCCCTT-TTGTCCTCCCGAGCTCTAAGCCTAGCAGCTGCCTGTCATAGAATGTTCACGGACATTGAAATGGTTCACTTGCATGGGGTGCAGAGTCACACTCACCTACCTTATGGGCAGAGCATCAACAAAAGATGAGTCAATTCGGTGTCTGAGAGAAGATCTCCTGGCTTCAATCCA-GCTTCACCACCTCCTCAACCTCT----------------CT-----------GAGTCACATAGTAGATTCCTGATGGGTTTTCTCTGATGATTAAATTATATATTGTCTATGTATTATACACATTATTACTGACTGAGACATATTAAGTGTccacaattcatagctaacatcatattgattatactattttggttgttttcattcttttg-ttttataaacgataattcaaggaatattcttgttatatatttttaaaaac--gtgtgattttcttcttaggctacatttttagaagataagttttt----------------------------------------------------------tgcatcaacatgatcttcttgagacattttccaaaaatgctctttagacactggggtgttttttctttgagatggggtctcactctgttcctcaggctggagtgcagtggtgtgatcacagctcactgtagccttgacctccccggctcaggcgatcctcctgggactacaggagggtgccaccatgc----ctaattttttttgtattttttgtagagatggggtttcgccatgttgccctggctggtctggaactcctggactcaagcaatctgcccacctcagcttcccaaagtgctgggattacaggcat---taagcc-----------------------------------aacatgcc----------------------------------------------tga-----------------ctctttagaaattgtatgccagtatttaatcccatcaacttttatgacagtaaatttcccctattctccactcaatattattatctttgactttcatctttgccaagctaagatatattaaacttccatcccatttcctaatccacattttaattttgttgacatttacttattactattata--------tttg----acacttgcatt-ttctatgccaaattatgctctaa--tattcattaatccttttc
s panTro5.chr6              30631268 1215 + 175400573 AAAT---GTAGTGGTTTCACATTTATCTTGGTAATTT----TTGCTAAATGTCCGTCTCTCTCATGACAGTGCAAGCTCCATATCATCAAGATCTTAC--TTTAGCTCTTCTTCTATCATCAATGTCTAGCTAATATCTTGATTCA-------CCTTGAAATATACACCGGATGATAGACTTTAGTGTGGTGTGGGCAGTGAAGTCACACGTGCCCTT-TTGTCCTCCCGAGCTCTGAGCCTAGCAGCTGCCTGTCATAGAATGTTCACGGACATTGAAATGGTTCACTTGCATGGGGTGCAGAGTCACACTCACCTACCTTATTGGCAGAGCATCAACAAAAGATGAGTCAATTAGGTGTCTGAGAGAAGATCTCCTGGCTTCAATCCA-GCTTCACCACCTCCTCAACCTCT----------------CT-----------GAGTCCAATAGTAGATTCCTGATGGGTTTTCTCTGATGATTAAATTATATATTGTCTATGTATTATACACATTATTACTGACTGAGACATATTAAGTGTCCACTATTCATAGCTAACATCATATTGATTATACTATTTACGTTGCTTTCATTCTTTTG-TTTTATAAACAATAATTCAAGGAATATTCTTGTTATATATTTTTAAAAAC--GTGTGATTTTCTTCTTAGGCTACATTTTTAGAAGATAAGTTTTT----------------------------------------------------------TGCATCAACATGATCTTCTTGAGACATTTTCCAAAAATGCTCTTTAGACATTGGGGTGttttttctttgagacggggtctcactctgttgctcaggctggagtgcagtg-tgtgatcacagctcactgtagccttgacctccccagctcaggcgatcctcgtgggactacaggagggtgccaccatgc----ctaattttttttgtattttttgtagagatggggtttcgccatgttgctctggctggtctggaactcctggactcaagcaatctgcccacctcggcttcccaaagtgctgggattacaggcat---taagcc-----------------------------------aacaagcc----------------------------------------------tga-----------------cTCTTTAGAAATTGTATGCCAGTATTTAATCCCATCAACTTTTATGACAGTAAATTTCCCCTATTCTCCACTCAATATTATTATCATTGACTTTCATCTTTGCCAAGCTAAGATATATTAAACTTCCCTCCCATTTCCTAATCCACATTTTAATTTTGTTGACATTTACTTATTACTATTATA--------TTTG----ACACTTGCATT-TTCTATTCCAAATTATGCTCTAA--TATACATTAATCCTTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31055235 1216 + 173848474 AAAT---GTAGTGGTTTCACATTTATCTTGGTAATTT----TTGCTAAATGTCCGTCTCTCTCATGACAGTGCAAGCTCCATATCATCAAGATCTTAC--TTTAGCTCTTCTTCTATCATCAATGTCTAGCTAATATCTTGATTCA-------CCTTGAAATATACACCGGATGATAGACTTTAGTGTGGTGTGGGCAGTGAAGTCACACGTGCCCTT-TTGTCCTCCCGAGCTCTGAGCCTAGCAGCTGCCTGTCATAGAATGTTCACGGACATTGAAATGGTTCACTTGCATGGGGTGCAGAGTCACACTCACCTACCTTATTGGCAGAGCATCAACAAAAGATGAGTCAATTAGGTGTCTGAGAGAAGATCTCCTGGCTTCAATCCA-GCTTCACCACCTCCTCAACCTCT----------------CT-----------GAGTCCAATAGTAGATTCCTGATGGGTTTTCTCTGATGATTAAATTATATATTGTCTATGTATTATACACATTATTACTGACTGAGACATATTAAGTGTCCACTATTCATAGCTAACATCATATTGATTATACTATTTACGTTGCTTTCATTCTTTTG-TTTTATAAACAATAATTCAAGGAATATTCTTGTTATATATTTTTTAAAAC--GTGTGATTTTCTTCTTAGGCTACATTTTTAGAAGATAAGTTTTT----------------------------------------------------------TGCATCAACATGATCTTCTTGAGACATTTTCCAAAAATGCTCTTTAGACATTGGGGTGttttttctgtgagacggggtctcactctgttgctcaggctggagtgcagtggtgtgatcacagctcactgtagccttgacctccccggctcaggcgatcctcgtgggactacaggagggtgccaccatgc----ctaattttttttgtattttttgtagagatggggtttcgccatgttgctctggctggtctggaactcctggactcaagcaatctgcccacctcggcttcccaaagtgctgggattacaggcat---taagcc-----------------------------------aacatgcc----------------------------------------------tga-----------------cTCTTTAGAAATTGTATGCCAGTATTTAATCCCATCAACTTTTATGACAGTAAATTTCCCCTATTCTCCACTCAATATTATTATCATTGACTTTCATCTTTGCCAAGCTAAGATATATTAAACTTCCCTCCCATTTCCTAATCCACATTTTAATTTCGTTGACATTTACTTATTACTATTATA--------TTTG----ACACTTGCATT-TTCTATTCCAAATTATGCTCTAA--TATACATTAATCCTTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      560516 1215 +   2037526 AAAT---GTAGTGGTTTCACATTTATCTTGGAAATTT----TTGCTAAATGTCCGTCTCTCTCATGACAGTGCAAGCTCCGTATCATCAAGATCTTAC--TTTAGCTCTTCTTCTATCTTCAATGTCTAGCTAATATCTTGATTCA-------CCTTGAAATATACACCAGAAGATGGACTTTAGTGTGGTGTGGGCAGTGAAGTCACACGTGCCCTT-GTGTCCTCCC-AGCTCTGAGCCTAGCAGCTGCCTGTCATAGAATGTTCACGGACATTGAAATGGTTCACTTGCATGGGGTGCAGAGTCACACTCACCTACCTTATGGGCAGAGCATCAACAAAAGATGAGTCAATTAGGTGTCTGAGAGAAGATCTCCTGGCTTCAATCCA-GCTTCACCACCTCCTCAACCTCT----------------CT-----------GAGTCACATAGTAGATTCCTGATGGGTTTTCTCTGATGATTAAATTATATATTGTCTATGTATTATACACATTATTACTGACTGAGACATATTAAGTGTCCACTATTCATAGCTAACATCAtattgattatactatttaggttgctttcattcttttg-ttttataaacaataattcaaggaatattcttgttatatatttttaaaaac--gtgtgattttcttcttaggctacatttttagaagATAAGTTTTT----------------------------------------------------------TGCATCAACATGATCTTCTTGAGACATTTTCCAGAAATGCTGTTTAGACATTGGGGTGttttttctttgagatggggtctcactctgttgctcaggctggagtgcagtggtgtgatcacagctcactgtagccttgacctccccggctcaggcgatcctcatgggactacaggagggtgccaccatgc----ctaattttttttgtattttttggagagatggggtttcgccatgttgccctggctggtctggaactcctggactcaagcaatctgcccacctcggcttcccaaagtgctgggattacaggcat---taagcc-----------------------------------aacatgcc----------------------------------------------tga-----------------cTCTTTAGAAATTGTATGCCAGTATTTAATCCCATCAACTTTTATGACAGTAAATTTCCCCTATTCTCCACTCAATATTATTATCATTGACTTTCATCTTTGCCAAGCTAAGATATATTAAACTTCCCTCCCATTTCCTAATCCACATTTTAATTTTGTTGACATTTACTTATTACTATTATA--------TTTG----ACACTTGCATT-TTCTATTCCAAATTATGCTCTAA--TATTCATTAATCCTTTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75192139 1218 + 122973662 AAAT---GTAGTGGTTTCACATTTATGTTGGTAATTT----TTGCTAAATGTCCGTCTCTCTCATGACAGTGCAAGCTCCATATCATCAAGATCTTACTTTTTAGCtcttcttctatcttcaatgtctagctaatatcttGATTCA-------CCTTGAAATATACACCGGATGATGGACTTTAGTGTGGTGTGGGCGGTGAAGTCACACGTGCCCTT-GTGTCCTCTCAAGCTCTGAGCCTAGCAGCTGCCTGTCATAGAATGTTCCCGGACATTGAAATGGTTCACTTGCATGGGGTACAGAGTCACACTCGCCTACCTTATGGGCAGAGCATCAACAAAAGATGAGTCAATTAGGTGTCTGAGAGAAAATCTCCTGGCTTCAATCCA-GCTTCACCACCTCCTCAACCTCT----------------CT-----------GAGTCACATAGTAGATTCCTGATGGGTTTTCTCTGATGATTAAATTATATATTCTCTATGTATTATACACATTATTACTGACTGAGACATATTAAGTGTCCACTATTCATAGGTAACAtcatattgattatactatttaggttgttttcattcttttg-ttttataaacaatcattcaaggaatattcttgttatatatttttaaaaac--gtgtgattttcttcttaggctacatttttagaagataaattttt----------------------------------------------------------tgcatcaacatgatcttcttgagacattttccaaaaatgctctttagacattggggtgttttttctttgagacggggtctcactctgttgctcaggctggagtgcagtcgtgtgatcacagctcactgtagccttgacctccccagctcaggcaatcctcgtgggactacaggagggtgccaccatgc----ctaatttttttttaattttttgtagagatggggtttcgccatgttgccctggctgttctggaactcctggactcaagcaatctgcccacctcagcttcccaaagtgctgggaatgcaggcat---taagcc-----------------------------------aacatgcc----------------------------------------------tga-----------------ctctttagaaattgtatgccagtatttaatcccattaacttttatgacagtaaatttcacctattctctactcaatattattatcattgactttcatctttgccaaGCTAAGATATATTAAACGTCCCTCCCATTTCCTAATCCACATTTTAATTTTGTTGACATTTACTTATTACTATTATA--------TTTG----ACACTTGCATT-TTCTATTCCAAATTATGCTCTAA--TATTCATTAATCTTTTTC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4              30756770 1294 + 171630274 AAAT---GTAGTGGTTTTATATTTATCTTGGTAATTTTTGCTTGCTAAATGTCCATCTCTCTCATGACAGTGCAAGCTGCATATCATCAGGATCTTAC--TTTAGC---TGTTCTATCTTCAGTGTCTAGCTGATCTCCTGATTCA-------CCTTGAAATATACA-CAGGTAATGAACTTTAGAGTGGTGTGGGCAGTCAAGTCACATGGCCTCTT-GTGTCCTCCTGAGCTTCAAGCCTAGTGACTGCCT-TCACACAATGTACTAGGACATCGAAATGGTTCACTTGCATGGGGTGCAGAGTCACACTCGCCTACCTTATGGACAGAGCATCAACAAAAGATGAGTCAATGAGGTATCTGAGAGAAAATCTCCTGGCTTCAATCCA-GCTCCACCACCTCCTTAACCTCT--GAGTCTTCCTTTCCCTGCCAGTGTAAAGAATCACATAATAGATTCCTCATGGGTATTCTCTGATGGTTAAAT--TATATTCTCTATGTAATATACACATTATGACTTACTGAGACATATTAAGTGTCCAGCATTCATAGTTAACATTATATTAATTATACcatttaggttgttttcaatcttttg-ttttataaacaatcattcaaagaatatccttgtcatatatttttgaaaat--gtgtaattttcttcttaggatacttttttagaagagaaattTTTTGACAAAACAGTAAAACTTTGGGCTGAAAAAAGG----AAAAAGAAGAGAAATCTTTTTGTATCAACATGATCTTCTTGAGATATTTTCTAAAAATGCTTTTTAGAAATTGGGTTGttttttctttgagacagggtctcaccctgttgttcaggctggagtgcagtggtgtgatcactgctcactgcagtcttgacctccccagctcaggtaatcctcctgggactacgagagggtgccaccatgctcaactaatttttttt---ttttttgtagagatgaggttttaccatgttgcccaggctggtctggaaatcctggactcaagcaatctgcccacctcagcttcccaaagtgctgggattacaggca----taagcc-----------------------------------aACCCATC----------------------------------------------TGA-----------------CACTGTAGAAATTATATGCCAGTATTTAAT-CCATCAACTTTTATGACAGTAAATTTCCCCTATACTCCACTTAATATTATTGTCATTGATTTTCATCTTTGCCAAGCTAAGATATATTAAACTTCTCTCCCATTTCTTAATCCACATTTTAATTTTGTTGACATTTACTTATTGCT-TTATA--------TTTGTTTAACATTTGCATT-TTCTTTTCCAAATTATGCTCTAA--TATTCATTAATCCGTTTC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1192269 1296 -   1771730 AAAT---GTAGTGGCTTCATATTTATCTTGGTAATTT----TTGCTAAATGTCCATCTCTCTCATGACAGTGCAAGTGCCATATCATCAGGATCTTAC--TTTAGC---TCTTCTATCTCCAGTGCCTAGCTGATCTCCTAATTCA-------CCTTGAAATATACACCAGATAATGAATTTTAGTGTGGTGTGGGCAGTCAAGTCACATGGCCTCTC-GTGTCCCCCTGAGCTTCCAGCCTAGTGACTGCCT-TCACAGAAGGTTCTAGGACATTGAAATGGTTCACTTGTATGGGGTGCAGAGTCACACTTGCCTACCTTATGGACAGAGCATCAACAAAAATTGAGTCAATGAGGCGTCTGAGAGAAAATCTCCTGGCTTCAATCCA-GCTCCACCACCTCCTTAACCTCT--GAGTCTTCCTTTCCCTGCCAGTGTAAAGAATCACATAATAGATTCCTCATGGGTATTTTCTGATGGTTAAAT--TATATTCTCTATGTGATATACACATTATGACTTACTGAGACATATTAAGTGTCCAGTATTCATAGCTGACATTATATTAATTATACcattttggttgttttcattcttttg-ttttataaacaatcattcaaagaatatccttgttaaatatttttgaaaat--gtataattttcttcttaggatacttttttagaagagaaattTTTTGAAAAACCAGTAAAACTTTGGGTTGAAAAAAAGGAAAAAAAAGAAGAGAAATTTTTGTGTATCAACAAGATCTTCTTGAGATATTTTCTAAAAATGCTTTTTAGAAATTGGGGTGttttttctttgagacagggtctcgccctgttgctcaggctggagtgcagtggtttgatcacgacttactgcagccttgacctccccggctcaggtaatcctcctgggactacaagagggtgccaccatgctcaactaacttttttt---ttttaaatagagatgaggttttgccatgctgcccaggctggtctggaaatcctggactcaagcaatctgcccacctcagcctcccaaagtgccgggattacaggca----taaacc-----------------------------------aacacatc----------------------------------------------tga-----------------cACTTTATAAATTATATGCCAGTATTTAAT-CCATCAACTTTTATGACAGTAAATTTCCCCTATACTCCACTCAATATTATTGTCATTGAATTTCATCTTTGCCCAGCTAAGATATATTAAACTTCTCTCCCATTTCTTAATCCACATTTTAATTTTGTTGACATTTACTTATTGCTATTATA--------TTTGTTTGACATTTGCATT-TTCTATTCCAAATTATGCTCTAA--TATTCATTTATCCTTTTC
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550            651279 1210 +  18854210 aaaTTTCGTGGTGATTTTACACATACTTTGGTAATGT----TTGCTAAATGTCCATCTCCCTCATGACAATGCAGACTTCATAGCACCAGGATCTCAT--GTTAGCTCTTCTGGTATCTTTGGTGTCTAGGTGAGCTCTTGATTCACTTGAGGCTTTGAAATATGCACTGGATGCTCAGAGTTAGTGTGGTTTGGGCCCTGAAGTCACACTGCTTCTCAATGTCCTCCTGAGCTCTGAGCCTAGTGGCCACCTGCTATAGAATCTTCTGGGACATTGGAA-AGTTCGCTTCAATGGGATACAGGGTCACACTCTCCTACTTTATGGGCAGGGTATCAATGACACATAAGTCAACATAGCCTCTGAGAGAACATCCCCTTGGCTCTACCCAGGCTCCACCACCTCTTTACCCCCTCTGAGTCTTCCTTTCCCTGTCTGTACAA-AGGAAGCATTTTGGGTTCATCATGGGCTTGCTCTGAAGATTAAATTG---ATTCTCTGTGTAAAATATACATTATTATTGACTAAAGCTTCTTAAGTGCCTACTATTGAtagctaatgtcatattgattaagccattttagttgtttccactccttggtttttgtaaatcgcaattcaaagaatatcgttgttatatacttttgaaaacatgtgtgaatatcttcttaggataaattcctagaaTAAATtcccct----------------------------------------------------------tgcctcagc------------------ctcctaa---------------------------------------------------------------------------------------------gtagc-----------------------------tgggactacaggctcccaccacaacac----ccggctattttt-----------agagatgggatcttgctttg--gctcaggctggtctcaaactcatgagcccagacaatccacccacctcagcctcccagagtgccaggattataggtgtgagTGAACCCAGATTTACCAAAGAAATGTTGGTGTCAAAATATAAACACATCATGATCTATGTAAAAATGACTTAATTAAAAAAAATAGTTATATtcttgatacattttacaataatgctctctagaaattttatatcagtgcttaatcgcatcaacctttatgacagtacattttccctatactctgatcaatactgttattattgactttcatctttgctaagctgaG--ATTTTAAATGTTATTCCTGTTTCATAGTCAACAGTTTAACTTTATTCACATTTATTTATTCCTAACATAAACATTTGTTTG----ATGTTTTCATTATTCTATCCCAAATTGTGTTCTAATGTGTTCATTAAACATTTTT
i otoGar3.GL873550         I 280 C 0
e aotNan1.NW_018496901v1      384351 1419 -    486031 M
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457   22 +    735854 I
e chlSab2.chr17             42106592   22 +  71996105 I
e cerAty1.NW_012002535v1      108975   22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509    0 + 170955103 I
e rheMac8.chr4             141479194    0 - 172585720 I

a score=896971.000000
s hg38.chr6_GL000254v2_alt   1786299 339 +   4827813 caaatgggacgtagatatttttAAATGTTGAATTtaagaaagaaaacaagaagcctctgatatctaggaactgatctgacacttatggctgggactccttgttatatgaagctggcccaatgttcattgttaagccatgttattctcctattggaccacaatca--ccacaaaacaccaacattaga-aagttcactctgagatgatgataaagtgaggaaatacaagaacacttcataattttgtctaagcactctctccactaataccaggggctgatgcttgtctaccaattacagctttattctgctctagtccaccctcactagagctaagatttgt
s panTro5.chr6              30632483 339 + 175400573 CAAATGGGATGTAGATATTTTTAAATGTTGAATTtaagaaagaaaacaagaagcttctgatatctaggaactgatctgacagttatggttgggactccttgttatatgaagctggcccaatgttcattgttaagccatgttattctcctattggaccacaatca--ccacaaaacaccaacattaga-aagttcactctgagatgatgataaagtgaggaaaaacaagaacacttcataattttgtctaagcactctctccactaataccaggggctgatgcttgtctaccaattacagctttattctgctctagtccaccctcactagagctaagatttgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31056451 339 + 173848474 CAAATGGGATGTAGATATTTTTAAATGTTGAATTtaagaaagaaaacaagaagcttctgatatctaggaactgatctgacagttatggctgggactccttgttatatgaagctggcccaatgttcattgttaagccatgttattctcctattggaccacaatca--ccacaaaacaccaacattaga-aagttcactctgagatgatgataaagtgaggaaaaacaagaacacttcataattttgtctaagcactctctccactaataccaggggctgatgcttgtctaccaattacagctttattctgctctagtccaccctcactagagctaagatttgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      561731 337 +   2037526 CAAATGGGATGTAGATATTTTTAAATGTTGAATTtaagaaagaaaacaagaagcttctgatatctaggaactgatctgacacttatggctgggactccttgttatatgaagctggcccaatgttcattgttaagccatgttattctcctattggaccacaatca--ccacaaaacaccaacattaga-aagttcactctgagatgatgataaagtgaggaaaaacaagaacacttcataattttgtctaagc-ctctctccactaataccaggggctgatgcttgtctaccaattacagctttattctgctctagtccaccctcactagagctaaga-ttgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75193357 339 + 122973662 CAAATGGGATGTAGATATTTTTAAATGTTGAATTtaagaaagaaaacaagaaggctctgatatctaggaactgatctgacacttatagctgggcttccttgttatatgaagctggcccaatgttcattgttaagccatgttattctcctattggaccacaatca--ccacaaaaaaacagcattaga-aagttcactctgagatgatgataaagtgaggaaaaacaagaacgcttcataattttgtctaagcacactctccactaacaccaggggccgatgcttgtctaccaattacagctttattctgctctagtccaccctcactagagctaaggtttat
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4              30758064 337 + 171630274 CAAATGGGATTTAGCTGTTTTAAAACATTGAATTtaagaaagaaaacaagcagactctgatatctaggaactgatctgacacttatagctgggcttcagtgttgtatgaagctggcctgatgttcattgttaagtcatgttattctcctattgcgccgcaatcatctcaccaaacaccatcactaga-aagttcactctgag-tgatgataaagtgaggaaaaacaagaacacttcataattttgtcgaagcactctttccacgaataccaagggctgacgcttgtataccaattacagctttattctgctctactccaccctccctagagctaagat---t
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1193565 338 -   1771730 CAAATGGGATTTAGATATTTTAAAATATCGAATTtaagaaagaaaacaagcaggctctgatatctaggaactgatctgacacttacagctaggcctcagtgttgtatgaagcaggcctgatgttcattgttaagtcatgttattctcctattggacctcaatcatctcacaaaacacgaacattaga-aagttcactttgagatgatgataaagtgaggaaaaacaagaacacttcataattttgtctaagcactctctccacgaataccaagggctgacgcttgtatacctattatggctttattctgctctattccactctccctagagctaagat---t
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1      385785 338 -    486031 CAAATGGGATTTAGATATTTTAAAATATTGAATTtaagaaagaaaacaagcaggctctgatatataggaactgatctgacacttacggctgggcctcagtgttgtatgaagctggcctgatgttcattgttaagtcatgttattctcctattggaccccaatcatctcacaaaacaccatcattaga-aagttcactctgcgattatgataaagtgaggaaaaacaagaacaattcataattttgtctaagcactctctccacaaataccaagggctgacgcttgtataccaattacagctttattctgctctactccactctccctagagctgagat---t
i aotNan1.NW_018496901v1   M 1419 C 0
s otoGar3.GL873550            652489 333 +  18854210 AAAATGGGGTGTAAGTATTTGAAAATATAGAATTTAAG-GGGAaaaaaagcagcctcagatacctaagaactgatctgaccct--------aggcctagtgctatgtgaagctagcctgatgttctttgttaaaccatgtcattctcctgttggacataaatcagctcacaaaacaccaacatcagacaaggtcattctgagatgatgctaaagtgacataaaacgagaacacttcacagatttgtctaagcacttttccctctgatatgaacggctgacgcttctctactaattacagttttaaccttttctaatccaccctctcttgagataagattttt
i otoGar3.GL873550         C 0 I 595
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457  22 +    735854 I
e chlSab2.chr17             42106592  22 +  71996105 I
e cerAty1.NW_012002535v1      108975  22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509   0 + 170955103 I
e rheMac8.chr4             141479194   0 - 172585720 I

a score=1690280.000000
s hg38.chr6_GL000254v2_alt   1786638 636 +   4827813 tgagacattcaattacagaattgcccctgcttcctgacgagtacccaatctagagtgaagcccacttcctc--accctccccaggatcacccaaccaaagcccaaatcctttaagaatttctttctaacaccctcttaccaaaacaccacatggctcacagcacctattcttgcactcaggaaccagtaataaacccaacttcttcacccactaggatatgttcctagtggactttggAAGAAAGCTTCGGACGCATTATTATTTTGTCTATAAA-TTTTTTATGTGTCTTTGAGGTTGATTATGAGAAACTGTCTGTATATATCTATGTTTGTGGTTACCAAAGAGAAGTTTTTTAATTTATAAGTACTTAAAACTACCCTCATACTTCTTTATGGTGTT-TATTTTTAGGTCATGCTTAGAGAATCCTTCTTCACTGCCCAATTGTAGACACTTCATGTATTGTTCCAGCTAGGTTGT---GACAATGAGGAAAGAGGAGTCCAAGGGTGAAGAAAACAAAATTGTTGGAATACAAGGGGAGGAGGGGCAGCAGGTAAAGAATTCTAAGGTTTAAGTCTCTTGTTTTATAATTTAAAAAATATGTCTACAGAGCCTTCAGGATACTTGACATATGTCATAT
s panTro5.chr6              30632822 636 + 175400573 tgagacattcaattacagaattgcccctgcttcctgacgagtacccaatctagagtgaagcccacttcctc--accctccccaggatcacccaaccaaagcccaaatcctttaagagtttctttctaacaccctcttaccaaaacaccacatggctcacagcacctattcttgcactcagcaaccagtaataaacccaacttcttcacccactaggatatgttcctagtggactttggAAGAAAGCTGTGGACTCATTATTATTTTGTCTATAAA-TATTTTATGTGTCTTTGAGGTTGATTATGAGAAACTGTCTGTATATATCTATGTTTGTGGTTACCAAAGAGAAGTTTTTTAATTTATAAGTACTTAAAACTACCCTCATACTTCTTTATGGTGTT-TGTTTTTAGGTTATGCTTACAGAATCCTTCTTCACTGCCCAATTGTAGACACTTCATGTATAGTTCCAGCTAGGTTGT---GACAATGAGGAAAGAGGAGTCCAAGGGTGAAGAAAACAAAATTGTTGGAATACAAGGGGAGGAGGGGCAGCAAGTAAAGAATTCTAAGGTTTAAATCTCTTGTTTTATAATTTAAAAAATATGTCTACAGAGCCTTCAGGATACTTGACATATGTCATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31056790 636 + 173848474 tgagacattcaattacagaattgcccctgcttcctgacgagtacccaatctagagtgaagcccacttcctc--accctccccaggatcacccaaccaaagcccaaatcctttaagagtttctttctaacaccctcttaccaaaacaccacatggctcacagcacctattcttgcactcagcaaccagtaataaacccaacttcttcacccactaggatatgttcctagtggactttggAAGAAAGCTGCGGACTCATTATTATTTTGTCTATAAA-TGTTTTATGTGTCTTTGAGGTTGATTATGAGAAACTGTCTGTATATATCTATGTTTGTGGTTACCAAAGAGAAGTTTTTTAATTTATAAGTACTTAAAACTACCCTCATACTTCTTTATGGTGTT-TGTTTTTAGGTCATGCTTACAGAATCCTTCTTCACTGCCCAATTGTAGACACTTCATGTATAGTTCCAGCTAGGTTGT---GACAATGAGGAAAGAGGAGTCCAGGGGTGAAGAAAACAAAATTGTTGGAATACAAGGGGAGGAGGGGCAGCAGGTAAAGAATTCTAAGGTTTAAATCTCTTGTTTTATAATTTAAAAAATATGTCTACAGAGCCTTCAGGATACTCGACATATGTCATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      562068 635 +   2037526 tgagacattcagttacagaattgcccctgcttcctga-gactaccccatctagagtgaagcccacttcctc--accctccccaggatcacccaaccaaagcccaaatcctttaagagtttctttctaacaccctcttaccaaaacaccacatggctcacagcacctattcttgcactcaggaaccagtaataaacccagcttcttcacccactaggatatgttcctagtggactttggAAGAAAGCTGCGGACGCATTATTATTTTGTCTATAAA-TTTTTTATGTGTCTTTGAGGTTGATTATGAGAAACTGTCTGTATATATCTATGTTTGTGGTTACCAAAGAGAAGTTTTTTAATTTATAAGTACTTAAAACTACCCTCATACTTCTTTATGGTGTT-TATTTTTAGGTCATGCTTAGAGAATCCTTCTTCACTGCCCAATTGTAGACACTTCATGTATAGTTCCAGCTAGGTTGT---GACAATGAGGAAAGAGGAGTCCAAGGGTGAAGAAAACAAAATTGTTGGAATACAAGGGGAGGAGGGGCAGCAGGTAAAGAATTCTAAGATTTAAATCTCTTGTTTTATAATTTAAAAAATATGTCTACAGAGCCTTCAGGATACTTGACATATGTCATAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75193696 637 + 122973662 tgagacattcaattacagaattgcccctgcttcctgacgagtacccaatctagagtgaagcccacttcctc--accctccccaggatcacccaaccaaagcccaaatcctttcaaagtttctttctaacaccctcttaccaaaacaccacatggctcacagcacctattcttgcactcaggaacaagtaataaacccaacttcttcacccactaggatatattcctagtggactttggAAGAAAGCTGTGGATGCATTATTATTTTGTCTATAAACTTTTTTATGTGTCTTTAAGGTTGATTATGAGAAACTGTCTGTATATATCTATGTTTGTGGTTACCAAAGAGAAGTTTTTTAATTTATAAGTACTTAAAACTACCCTCATACTTCTTTTTGGTGTT-TATTTTTAGGTGATGCTTAGAGAATCCTTCTTCACTGCCCAATTGTAGACACTTCACGTATAGTTCCAGCTAGGTTGT---GACAATGAGGAAAGAGGAGTCCAAGGGTGAAGAAAACAAAATTGTTGGAATACAAGGGGAGGAGGGGCAGCAGGTAAAGAATTCTAAGGTTTAAATCTTTTGTTTTATAATTTAAAAAATATGTCTACAGAGCCTTCAAGATACTTGACATATGTCATAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4              30758401 634 + 171630274 taagacacccagttacagaattgcccctgcttccagaccagtacccaatctagagcgaagcctacttcctt--atcctccccaggatcacccaactaaagcccaaatcctgtaagagtttctttctaacaccctcttaccgaaacaccacgtggctcatagcacacattcttgcactcggcaacaagtcataaacccaacttcttcacccac--gggtatgttcctaggagactttgAAATAAGGCTGTGGACACATTATTATTTTGTCCATAAACTTTTTTATGTGTCTTTGAGGTTGATTATGAGAAAGTGTTTGCATATATCTGTGTTTGTGGTTACCAAAGGGAAG-tttttaatttataagtaattaaaattatCCTCATATTTCTTTATGGTGTTGCATTTTTAGGCTATGCTTAGAGAATCCTTCTTCACTGCCCAATTGTAGACACTTCAAATATAGTTCCAACTAGGTTGT---GACAATGCGGAAAGAGGAGTCTAACGGTGAAGAAAACAAAATTATTGGAATAC-AGGGAAGGAAGAGCAACAGGTAAAGAATTATAAGGGTTAAATCTCTTGTTTTATAATTTTAAAAATATGCCTACAGAGCCTTCAGGGTACTTGACATATGTCATAT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1     1193903 634 -   1771730 tgagacacccagttacagaattgcccctgcttccagatgagtacccaatctagagcgaagcctacttcctt--accctccccaggatcacccaactaaagcccaaatcctataagagtttctttctaacaccctcttaccaaaacaccacatggctcacagcacacattcttgcactcagcaacaagtcataaacccaacttcttcacccac--agatatgttcctaggagactttgAAATAAGGCTGTGGACAC---ATTATTTTGTCCATAAACTTTTTTATGTGTCTTTGAGGTTGATTATGAGAAAGTGTTTGCATATATCTGTGTTCGTGGTTACCAAAGAGAAG-TTTTTAATTTATAAGTACTTAAAATTATCTTCATCTTTGTTTGTGGTGTTGCATTTTTAGGTTATGCTTAGAGAATCCTTCTTCACTGTCCAATTGTAGACACTTCAGATATAGCTCCAGCTAGGTTGTGACGACAATGAGGAAAGAGGAGTCTAACGGTGAAGAAAACAAAATTATTGAAATAC-AGGGGAGGAGGAGCAACAGGGAAAGAATTATAAGGTTTAAATTTCTTGTTTTATAATTTTAAAAATATGCCTACAGAGCCTTCAGGGTACTTGACATATGTCATAT
i cebCap1.NW_016107755v1   C 0 I 25008
s aotNan1.NW_018496901v1      386123 633 -    486031 tgagacacgcagttacagaattgcccctgcttccagac-agtacccaatctagagtgaagcctactttctt--accctccccaggatcacccagctaaagcccaaatcctataagagtttctttctaacaccctcttaccgaaacaccacgtggctcacggcacacattcttgcactcagcaacaagtcataaacccaacttcttcacccac--gggtatgttcctaggagactttgAAATAAGGCTGTGGACACATTATTATTTTGTCCATAAACTTTTTTATGTGTCTTTGAGGTTGATTATGAGAAAGTGTTTGCATATATCTGTGTTTGTGGTTACCAAAGAGAAG-TTTTTAATCTATAAGTACTTAAAACTATCCTCATGTTTCTTTATGGTGTTGCATTTTTAGGTTATGCTTAGAGAATCCTTCTTCACTGCCCGATTGTAGACACTTCAGATATAGTCCCAGCTAGGTTGT---GACGCTGAGGAAAGAGGAGTCTAATGGTGAAGAAAACAAAATTATTGGAATAC-AGGGGAAGAGGAGCAACAGGTAAAGAATTATAAGATTTAAATCTCTTGTTTTATAATTTTAAAAATATGCCTACAGAGCCTTCAGGGTACTTGACATATGTCATAT
i aotNan1.NW_018496901v1   C 0 I 44601
s otoGar3.GL873550            653417 601 +  18854210 tgagatacccaattacagaattgcctttgcttcctgacaagta-ccaagctagagtgaagcttagttccttaaaccatccctagaatcacccaatcaaaggccaaacctgataatatgttctttctaactccctcttgctgagacatcacaaggttcacagtgaacattcttgcacttggcaataagtgataaaccagacgtcttcacgcac--aggtgcgttcctggtggcctttggcagaggggcatGGCCATATCACTG--TTGTCTCTGAACTCTTTTATATGTCTTTGAGGTTGATTATGAGAAAGGGTTTGTATATTTTTATGTT-GTAGTTACTAAAAAGAAGTTTTTAAATTTGTAAGTAGTTAAAATTACCATAAT-TTTCCTTATGACTTTCCATCTTTGGATCATAAATGGAGAATCCTTCCTCACTCCTCAATTATAGACATTTTGTGTATATTCCCA-TTAGGCTGT---GACAATGAGGACAAAAGAGTCTGGGGGCAAAGGAAA-AAAATTATTGGGATATGGGGGAAGGGGAAGCAACAGGTAAGGAATTGTAAGG------------------------------TGTGCGTACAGGGCCTACAGGCTACCTGAATGATGTCATAT
i otoGar3.GL873550         I 595 C 0
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457  22 +    735854 I
e chlSab2.chr17             42106592  22 +  71996105 I
e cerAty1.NW_012002535v1      108975  22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509   0 + 170955103 I
e rheMac8.chr4             141479194   0 - 172585720 I

a score=2574.000000
s hg38.chr6_GL000254v2_alt   1787274 2 +   4827813 CC
s panTro5.chr6              30633458 2 + 175400573 CC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31057426 2 + 173848474 CC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      562703 2 +   2037526 TC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75194333 2 + 122973662 TC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4              30759035 2 + 171630274 TC
i calJac3.chr4             C 0 I 29019
s otoGar3.GL873550            654018 2 +  18854210 TC
i otoGar3.GL873550         C 0 I 4
e aotNan1.NW_018496901v1      386756 44601 -    486031 I
e cebCap1.NW_016107755v1     1194537 25008 -   1771730 I
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457 22 +    735854 I
e chlSab2.chr17             42106592 22 +  71996105 I
e cerAty1.NW_012002535v1      108975 22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509 0 + 170955103 I
e rheMac8.chr4             141479194 0 - 172585720 I

a score=268982.000000
s hg38.chr6_GL000254v2_alt   1787276 245 +   4827813 AATAGTTTGTCTTGAGAAAAATGGATACTTATCT-TCTCCTTGTATTCACCTGGTTAAAGCAAACAATAACAACAGAATTCCAGTGCAATATAGACAATGA----TTAGCCCTGGCAATGGGCATTTTTGAACACTTAAAATGTTGAGGTGATAAATCATGTTTCGGTTAATGTCTGTACCCTCCACTTAT-----ACATATACATATTAATTAGACTTTCGTGGGCTTG----CTGTGTTTTAAGGACGTGTCTAAGG
s panTro5.chr6              30633460 245 + 175400573 AATAGTTTGTCTTGAGAAAAATGGGTACTTATCT-TCTCCTTGTATTCACCTGGTTAAAGCAAACAATAACAACAGAATCCCAGTGCAATATAGACAATGA----TTAGCCCTGGCAATGGGCATTTTTGAACACTTAAAATGTTGAGGCGATAAATCATGTTTCGGTTAATGTCTGTACCCTCCACTTAT-----ACATATACATATTAATTAGACTTTCGTGGGCTTG----CTGTGTTTTAAGGACGTGTCTAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31057428 245 + 173848474 AATAGTTTGTCTTGAGAAAAATGGGTACTTATCT-TCTCCTTGTATTCACCTGGTTAAAGCAAACAATAACAACAGAATCCCAGTGCAATATAGACAATGA----TTAGCCCTGGCAATGGGCATTTTTGAACACTTAAAATGTTGAGGCGATAAATCATGTTTCGGTTAATGTCTGTACCCTCCACTTAT-----ACATATACATATTAATTAGACTTTCGTGGGCTTG----CTGTGTTTTAAGGACGTGTCTAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      562705 245 +   2037526 AATAGTTTGTCTTGAGAAAAATGGATACTTATCT-TCTCCTTGTATTCACCTGGTTAAAGCAAACAATAACAACAGAATCCCAGTGCAATATAGACAATGA----TTAGCCCTGGCAATGGGCATTTTTGAACACTTAAAATGTTGAGGTGATAAATCATGTTTCGGTTAATGTCTGTACCCTCCACTTAT-----ACATATACATATTAATTAGACTTTCGTGGGCTTG----CTGTGTTTTAAGGACGTGTCTAAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75194335 246 + 122973662 AATAGTTTGTCTTGAGAAAAATGGATACTTATCTGTCTCCTTGTATTCAGCTGGTTAAAGCAAACAATAACAACAGAATCCCAGTGCAATATAGCCAATGA----TTAGCCTTGGCAATGGGCATTTTTGAACACTTAAAATGTTGAGGTGATAAATCATGTTTCGGTTAATGTCTGTACCCTCCACTTAT-----ACATATACATATTAATTAGACATTTTTGGGCTTG----CTGTGTTTTAAGGACGTGTCTAAGG
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873550            654024 252 +  18854210 AATAGTTTATCTTGGGATGAACTAG-ACTTATTTGTTTCCTAGAGTTTACCAGGTTAAAGCAAACAATAACACCAGGGT-CCAATGCAATAAACACAAGGATTAGTTAGCATTGGTAATGGGCATTTGTG-ACACTTACAACCTTGAGGTAATAAATCATGTTTTGGTTAATATCTATATACTCTAGTTATCTACAAAAAATAAATTTTAAAAAGTTAGTTGATggctcggcacctgtggctcaa----gtggctaagg
i otoGar3.GL873550         I 4 T 69887
e aotNan1.NW_018496901v1      386756 44601 -    486031 I
e cebCap1.NW_016107755v1     1194537 25008 -   1771730 I
e calJac3.chr4              30759037 29019 + 171630274 I
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457  22 +    735854 I
e chlSab2.chr17             42106592  22 +  71996105 I
e cerAty1.NW_012002535v1      108975  22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509   0 + 170955103 I
e rheMac8.chr4             141479194   0 - 172585720 I

a score=480022.000000
s hg38.chr6_GL000254v2_alt   1787521 541 +   4827813 CCCATGTGGACAAATCCGTGACTTCTCGATGAAGATAATTTAATATATATTCAATCTGAGAGTCCCACCATATATTTTGGGGGAGATTGAAAACTATGAGCACTCTAGATATGCACTGTTAAATATGGTAACTACTGGGCATACATAGTGTAGGgtttgtttttgtttgtttgtttTCATTATTAGTACaaatccattcaatgggcaagatagaccaatctattttaacataacagaatacaaatagtcaatgatagggtttcaggttgtatctaacctttaagaaattatcacttgctaggacttccagtactatgttgaa-agaagtggtgaaagtgggcgtcctcgtcttgttccagttctcagggggaatgctttcatcttttctctgtgcagtataaggttggctgtgggtgtgtcataaagggcttttattactttaaggtatgtcccttctatgctgattttgctgaggcttttaatcataaagggatgctggattttatcgaatactttttctgcattttattgaaacgattat
s panTro5.chr6              30633705 542 + 175400573 CCCATGTGGACAAATCCGTGACTTCTCAATGAAGATAATTTAATATATATTCAATCTGAGAGTCCCACCATGTATTTTGGGGGAGATTGAAAACTATGAGCACTCTAGATATGCACTGTTAAATATGGTAACTACTGGGCATACATAGTGTAGCCTTTGTTTTTGTTTGTTTGTTTTCATTATTAGTACaaatccattcaatgggcaggataaaccaatctattttaacatgacagaatacaaatagtcaatgatagggtttcaggttgtatctaacctttaagaaattaccacttgctaggacttccagtactattttgaatagaagtggtgaaagtgggcgtcctcgtcttgttccagttctcagggggaatgctttcatcttttctctgtgcagtataaggttggctgtgggtgtgtcatagagggcttttactactttaaggtatgtcccttctatgctgattttgctgaggcttttaatcataaagggatgctggattttatcgaatactttttttgcattttattgaaacgattat
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31057673 542 + 173848474 CCCATGTGGACAAATCCGTGACTTCTCAATGAAGATAATTTAATATATATTCAATCTGAGAGTCCCACCATATATTTTGGGGGAGATTGAAAACTATGAGCACTCTAGATATGCACTGTTAAATATGGTAACTACTGGGCATACATAGTGTAGCCTTTGTTTTTGTTTGTTTGTTTTCATTATTAGTACaaatccattcaatgggcaagataaaccaatctattttaacataacagaatacaaatagtcaatgatagggtttcaggttgtatctaacctttaagaaattaccacttgctaggacttccagtactatgttgaatagaagtggtgaaagtgggcgtcctcgtcttgttccagttctcagggggaatgctttcatcttttctctgtgcagtataaggttggctgtgggtgtgtcatagagggcttttactactttaaggtatgtcccttctatgctgattttgctgaggcttttaatcataaagggatgctggattttatcgaatactttttttgcattttattgaaacgattat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      562950 542 +   2037526 CCCATGTGGACAAATCCGTGACTTCTCGATGAAGATAATTTAATATATATTCAATCTGAGAGTCCCACCATATATTTTGGGGGAGATTGAAAACTATGAGCACTCTAGATATGCACTGTTAAATATGGTAACTACTGCGCATACATAGTGTAGGCTTTGTTTTTGTTTGTTTGTTTTCATTATTAGTACaaatccattcaatgggcaagatagaccaatctattttaacataacagtatacaaatagtcaatgatagggtttcaggttgtatctaacctttaagaaataaccacttgctaggacttccagtactatgttgaatagaagtggtgaaagtgggcgtcctcgtcttgttccagttctcagggggaatgctttcatcttttctctgtgcagtataaggttggctgtgggagcgtcatagagggcttttattactttaaggtatgtcccttctatgctgattttgctgaggcttttaatcataaagggatgctggattttatcgaatactttttctgcattttattgaaacgattat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75194581 541 + 122973662 CCCATGTGGACAAATCCATGACTTCCCGATGAAGATAATTTAATATATATTCAATCTGAGAGTCCCACCATATATTTTGGGGAAGATTGAACACTATGAGCACTCTAGATATGCACTGTTAAATATGGTAACTACTGGACATACATAGTGTGGGCTTTGTTTTTGTTTGTTTGTTTTCATTATTAGTACaaatccattcaatgggcaagatagaccaatctattttaacgtaacagaatataaatattcaatgatagggtttcaggttgtatctaacctttaagaaattaccacttgctaggacttccagtactatgttgaatagaagtggtgaaagtggatatccttgtcttgttccagttctcagagggaatgctttcatcttttctctgtgcagtataatgttggctgtgggtgtgtcatagagggcttttattactttaaggtatgtcccttctatgccgattttgctgagggttttaataataaagtgatgacggattttatcgaatgc-ttttctgcattttattgaaatgattat
i nomLeu3.chr1a            C 0 I 25693
e otoGar3.GL873550            654276 69887 +  18854210 T
e aotNan1.NW_018496901v1      386756 44601 -    486031 I
e cebCap1.NW_016107755v1     1194537 25008 -   1771730 I
e calJac3.chr4              30759037 29019 + 171630274 I
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457  22 +    735854 I
e chlSab2.chr17             42106592  22 +  71996105 I
e cerAty1.NW_012002535v1      108975  22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509   0 + 170955103 I
e rheMac8.chr4             141479194   0 - 172585720 I

a score=3984.000000
s hg38.chr6_GL000254v2_alt   1788062 7 +   4827813 TTCagag
s panTro5.chr6              30634247 7 + 175400573 TTCagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31058215 7 + 173848474 TTCagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      563492 7 +   2037526 TTCagag
i gorGor5.CYUI01015528v1   C 0 C 0
e otoGar3.GL873550            654276 69887 +  18854210 T
e aotNan1.NW_018496901v1      386756 44601 -    486031 I
e cebCap1.NW_016107755v1     1194537 25008 -   1771730 I
e calJac3.chr4              30759037 29019 + 171630274 I
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457 22 +    735854 I
e chlSab2.chr17             42106592 22 +  71996105 I
e cerAty1.NW_012002535v1      108975 22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509 0 + 170955103 I
e rheMac8.chr4             141479194 0 - 172585720 I
e nomLeu3.chr1a             75195122 25693 + 122973662 I

a score=2820.000000
s hg38.chr6_GL000254v2_alt   1788069 3 +   4827813 aga
s panTro5.chr6              30634254 3 + 175400573 aga
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31058222 3 + 173848474 aga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      563499 3 +   2037526 aga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75220815 3 + 122973662 aga
i nomLeu3.chr1a            I 25693 C 0
e otoGar3.GL873550            654276 69887 +  18854210 T
e aotNan1.NW_018496901v1      386756 44601 -    486031 I
e cebCap1.NW_016107755v1     1194537 25008 -   1771730 I
e calJac3.chr4              30759037 29019 + 171630274 I
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457 22 +    735854 I
e chlSab2.chr17             42106592 22 +  71996105 I
e cerAty1.NW_012002535v1      108975 22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509 0 + 170955103 I
e rheMac8.chr4             141479194 0 - 172585720 I

a score=618496.000000
s hg38.chr6_GL000254v2_alt   1788072 516 +   4827813 gagagagag--agggagggagggagggagagaga----------------------------------gagagagagagaTGGGGTGAAGGAACAGGCTGGGAACCT--------------------------------------------GGGAGGAGACCCGGCCGCAGGCGCGCAGCCTGGAGGCGATGGTGAGCCCTGCCACGCGTGAGTCACGGACCACCC-CCGCC----------------GCGCTCTGCTCCCCGCCTGGCTCTCTTCTTCCCAGCCCCTCCCTTCCTCCTCCTGCTCCACTGATCCCTACTCAGGCTTCTTTCGCTGAAGAATTCCAGAAGGGACAGAACTAAGGATGAAGTGTGGCATTTGAACAGGG-TTTACGGCTAGATCCTA-GGAGGTCATTCTAAGGGTTTACATTGCATCACCGTCTGTGGTTACAAAGagctttccgggagaactttccatttgtaggtttggtcagggagaccctgtgatcaccccagtgcccagagaaggaaactgaagcccagggttctgcagaggcttgcccaggctacacagATCTTCAGCTAGATTCGAAT--AGTTAAAAATCCAGGTGATC
s panTro5.chr6              30634257 520 + 175400573 gagagggagggagggagggaggcggggagagaga--------------------------------cagagagagagagaTGGGGTGAAGGAACAGGCTGGGAACCT--------------------------------------------GGGAGGAGACCCGGCCGCAGGCGCGCAGCCTGGAGGCGCTGGTGAGCCCTGCCCCGCGTGAGTCACGGGCCACCC-CCGCC----------------GCGCTCTGCTCCCCGCCTGGCTCTCTTCTTCCCAGCCCCTCCCTTCCTCCTCCTGCTCCACTGATCCCTACTCAGGCTTCTTTCGCTTAAGAATTCCAGAAGGGACAGAACTAAGGATGAAGTGTGGCATTTGAACAGGG-TTTACGGCTAGATCCTA-GGAGGTCATTCTAAGGGTTTACATTGCATCACCATCTGTGGTTACAAAGAGCTTTCCGGGAGAACTTACCATTTGTAGGTTTGGTCAGGGAGACCCTGTGATCACCCCAGTGCCcagagaaggaaactgaagcccagggttctgcagaggcttgcccaggctacacagATCTTCAGCTAGATTCGAAT--AGTTAAAAATCCAGGTGATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31058225 520 + 173848474 gagagggagggagggaaggaggcagggagagaga--------------------------------cagagagagagagaTGGGGTGAAGGAACAGGCTGGGAACCT--------------------------------------------GGGAGGAGACCCGGCCGCAGGCGCGCAGCCTGGAGGCGCTGGTGAGCCCTGCCCCGCGTGAGTCACGGGCCACCC-CCGCC----------------GCGCTCTGCTCCCCGCCTGGCTCTCTTCTTCCCAGCCCCTCCCTTCCTCCTCCTGCTCCACTGATCCCTACTCAGGCTTCTTTCGCTTAAGAATTCCAGAAGGGACAGAACTAAGGATGAAGTGTGGCATTTGAACAGGG-TTTACGGCTAGATCCTA-GGAGGTCATTCTAAGGGTTTACATTGCATCACCATCTGTGGTTACAAAGagctttccgggagaactttccatttgtaggtttggtcagggagaccctgtgatcaccccagtgcccagagaaggaaactgaagcccagggttctgcagaggcttgcccaggctacacagATCTTCAGCTAGATTCGAAT--AGTTAAAAATCCAGGTGATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      563502 548 +   2037526 gagagagag--agggagggagggagggagagagagagagagagagagagagagagagagagagagagagagagagagagaTGGGGTGAAGGAACAGGCTGGGAACCT--------------------------------------------GGGAGGAGACCCGGCCGCAGGCGCGCAGCCTGGAGGCGCTGGTGAGCCCTGCCCCGCGTGAGTCACGGGCCACCC-CCGCC----------------GCGCTCTGCGCCCTGCCTGGCTCTCTTCTTCCCAG-CCCTCCCTTCCTCCTCCTGCTCCACTGATCCCTACTCAGGCTTCTTTCGCTTAAGAATTCCAGAAGGGACAGAACTAAGGATGAAGTGTGGCATTTGAACAGGG-TTTACGGCTAGATCCTA-GGAGGTCATTCTAAGGGTTTGCATTGCATCACCGTCTGTGGTTACAAAGagctttccgggagaactttccatttgtagatttggtcagggagaccctgtgatcacctcagtgcccagagaaggaaactgaagcccagggttctgcagaggcttgccc-ggctacacagATCTTCAGCTAGATTCGAAT--AGTTAAAAATCCAGGTGATC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75220818 575 + 122973662 gagagagag--agagagagagagagagagagaga----------------------------------gagagagaTGGGCGGGGTGAAGGACCAGGCTGGGAACCTGGTGCCGGGTGGGTGTTAC--GTTACTGGGTCTCTGCCAACTTGGGGAGGAGACTGGGCTGCAGGGACGCAGCCTGTAGGCGCGGGTAAGCCCCGCCCCGCGTGAGTCGCCGGCCACCC-CTGCCGCGCTCAGCTCCCCCGGCGCTCTGCTCCCCTCCTGGCTCTCTTCTTCCCAGGCCCTCCC-TCCTCCTCCTGCTCCACTGATCCCGACTCAGGCTTCTTCCCCTTAGGAATTCCGGAAGGGACAGAACTAAGGATGAATTGTGGCATTTGAACAGGG-TTTACAGCTAGATCCTA-GGAGGTTATTCTAAGGGTTTACATTGCATCACCGTCTCTGGTTACAAAGAGCTTTCCGGGAGAACTTTCCATTTGGAGGTTTGGTCAGGGAGACCCTGTGATCATCCCGGTGCCCATGGAaggaaattgaagcccggagttctaaagaggcttgcccaggctacacagATCATCAGCTAGATTCGAATAGAGTTAAAAATCCAGGTGATC
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             29910852 554 -  71996105 gagacagag--agagagagagagagagagagaga----------------------------------gagagagagagGTGGGGTGAAGGAACAGCCTGGGAACCT-------GGTGCCAGGTGCGTGTTACTGGGTCTCTGCCAACTTGGGGAGGAGACCAGGCCGCAGGTGCGCAGCCTGGAGGCGTGGGTGAGCCCCGCCCCGAGTGAGTCACCGGCCACTCACCGCC----------------GCGCTCTGCTCCCCACGTGGCTCTCTTCTTCCCAGCCCCT----TCCTCCGCCTGCTCCACTCATCCCGACTCAGGTTTCTTTCCCTTAGGAATTCCGGAAGGGACAGAACTAAGGATGAAGTGTGGCATTTGAACAGAGTTTTACGGCTAGATCCTAGGGGGGTCATTCTAAGGGTTTACATTGCATCTCCGTCTCTGGTTACAAAGAGCTTTCCGGGAGAACTTTCCATTTGGAGGTTTGGTCAGGGAGACCCTGTGATCGccccagtgcccagggaaggaaactgaggcccagatttctgaagaggcttgcccaggctacaaagATCTTCAGCTAGATTCGAATAGAGTTAAAAATCTAGGTGATC
i chlSab2.chr17            I 12963 I 313
e otoGar3.GL873550            654276 69887 +  18854210 T
e aotNan1.NW_018496901v1      386756 44601 -    486031 I
e cebCap1.NW_016107755v1     1194537 25008 -   1771730 I
e calJac3.chr4              30759037 29019 + 171630274 I
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457  22 +    735854 I
e cerAty1.NW_012002535v1      108975  22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509   0 + 170955103 I
e rheMac8.chr4             141479194   0 - 172585720 I

a score=1030605.000000
s hg38.chr6_GL000254v2_alt   1788588 882 +   4827813 AAAGGCGGAGCAGCGTCTTCCAAGAGCCC--GGAGAGAGAGGACACCCCACTCCTGGACGTTATATTCTGCAGCCCGCT-GCTGGGAAATCCCAAGGGGTATGCGACCAGGTTGGAGTATCCTGGGCCCAGGGCCCACGAAAATGGCTTTCACTGTTGGAGGGGATCTTGAATCCAGAATCTGTTCCCAAAAAAGAGAAAGAAAAGCAGATTTGGGTGACCTCAAAAGTTTCAAACTACCTTCCCACGTATCCTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa---CCTTCATTTTTaatatataaagacactgaaaattcaacagttt-aaaaaaatcaataaaataggaaagtggacaaaacacatgacaaatatttcttttaaaatgatatgtagatgggaagtgaggacacaaaaatgtggtccatatgcggagcttgcagtgagccgagatcgcgccactgcactccagccggggccacagagcgagactccatctcaaaaaaaaaaaaaaaaa---------aaaaaaaaTGtggtccatatgattcatcattggggaaatgtaattaaaaccattatgagatattactacacccctatcagaatgaataaaataagaaatagaaataacaccacatgctggatgtggagaaaatggctgaatcactcattgctggtgggaatgtaaaatggtacagccactctagaaactagagtatggcgaaaaaaaa------------aaaaactaaacatgccattgcactctagggcatttatcccagagaaatgaacacttaagttcacaccgaaatcagcatacagcatataaaggttcgtagcagAGCAGAGACCTGAGCAGGaaaaaaaa---------aaaaaaaaaaaaaaa--CCCACTGT
s panTro5.chr6              30634777 869 + 175400573 AAAGGCGGAGCAGCGTCTTCCAAGAGCCC--GGAGAGAGAGGACACCCCACTCCTAGACGTTATATTCTGCAGCCCGCT-GCTGGGAAATCCCAAGGGGTATGCGACCAGGTTGGGGTATCCTGGGCCCAGGGCCCACGAAAATGGCTTTCACTGTTGGAGGGGATCTTGAATCCAGAATCTGTCCCCAAAAAAGAAAAAGAAAAGCAGATTTGGGTGACCTTAAAAGTTTCAAACTACCTTCCCACGTATCCTaaaaaaaaacaaaaaacaaaaaaaaa------------------CTTCATTTTTaatatataaagacactgaaaattcaacagttt-aaaaaaatcaataaaataggaaagtggacaaaacacatgacaaatatttcctttaaaaggatatgtagatgggaagtgaggacacaaaaatgtggtccatatgcggagcttgcagtgagccgagatcgcgccactgcactccagccggggccacagagcgagactccatctcaaaaaaaaaaaaaaaaa---------aaaaaaaaTGtggtccatatgattcatcattggggaaatgtaattaaaaccattatgagatattactatacccctatcagaatgaataaaataagaaatagaaataacaccacatgctggatgtggagaaaatggctgaatcactcattgctggtgggaatgtaaaatggtacagccactctagaaactagagtatggcaaaaaaaaa------------aaaaactaaacatgccattgcactctagggcatttatcccagagaaatgaacacttaagttcacagagaaatcagcatacagcatataaaggtttgtagcagAGCAGAGACCTGAGCAGGaaaaaaaa---------aaacaaaaaacaaaaaCCCCACTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31058745 864 + 173848474 AAAGGCGGAGCAGCGTCTTCCAAGAGCCC--GGAGAGAGAGGACACCCCACTCCTAGACGTTATATTCTGCAGCCCGCT-GCTGGGAAATCCCAAGGGGTATGCGACCAGGTTGGGGTATCCTGGGCCCAGGGCCCACGAAAATGGCTTTCACTGTTGGAGGGGATCTTGAATCCAGAATCTGTCCCCAAAAAAGAGAAAGAAAAGCAGATTTGGGTGACCTTAAAAGTTTCAAACTACCTTCCCACGTATCCTaaaaaaaca-aaaaaacaaaaaaaaa------------------CTTCATTTTTaatatataaagacactgaaaattcaacagtttaaaaaaaatcaataaaataggaaagtggacaaaacacatgacaaatatttcctttaaaaggatatgtagatgggaagtgaggacacaaaaatgtggtccatatgcggagcttgcagtgagccgagatcgcgccactgcactccagccggggccacagagcgagactccatctcaaaaaaaaaaaaaaaaa------------------Gtggtccatatgattcatcattggggaaatgtaattaaaaccattatgagatattactacacccctatcagaatgaataaaataagaaatagaaataacaccacatgctggatgtggagaaaatggctgaatcactcattgctggtgggaatgtaaaatggtacagccactctagaaactagagtatggacaaaaaaaa------aaaaacaaaaactaaacatgccattgcactctagggcatttatcccagagaaatgaacacttaagttcacacagaaatcagcatacagcatataaaggtttgtagcagAGCAGAGACCTGAGCAGGaaaaaaaa---------aacaaaaacaaaaaC--CCCACTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      564050 901 +   2037526 AAAGGCGGAGCAGCGTCTTCCAAGAGCCC--GGAGAGAGAGGACACCCCACTCCTGGACATTATATTCTGCAGCCCGCTGGCTGGGAAATCCCAAGGGGTATGCGACCAGGTTGGGGTATCCTGGGCCCAGGTCCCACGAAAATGGCTTTCACTGTTGGAGGGGATCTTGAATCCAGAATCTGTCCCCAAAAAAGAGAAAGAAAAGCAGATTTGGGTGACCTCAAAAGTTTCAAACTACCTTCCCACGTATCCaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaCCCTTCATTTTTaatatataaagacactgaaaattcaacagttt-aaaaaaatcaataaaataggaaagtggacaaaacacatgacaaatatttcctttaaaaggatatgtagatgggaagtgaggacacaaaaatgtggtccatatgcggagcttgcagt-agccgagatcgcaccactgcactccagccggggccacagagcgagactccatctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatgtggtccatatgattcatcattggggaaatgtaattaaaaccattatgagatattactacacccctatcagaatgaataaaataagaaatagaaataacaccacatgctggatgcggagaaaatggctgaatctctcattgctggtgggaatgtaaaatggtacagccactctagaaactagagtatggcaaaaaaaaaaaaaaaaaaaaaaaaaactaaac-tgccattgcactctagggcatttatcccagagaaatgaacacttaagttcacacagaaatcagcatacagcatataaaggttcgtagcagAGCAGAGACCTGAGCAGGAAAAACAA-------------AAAACAAAAAC--CCCACTGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75221393 839 + 122973662 AAAGGTGGAGCAGCGTCTTCCAGGAGCCC--CGAGAGAGAGGACACCCCACTCCTGGACGTTATATTCTGCAGCCCGCT-GCTGGGAAATTCCAAGGGGAATGCGGCCAGGTTGGGGTATCCTGGGCCCAGGGCCCACGGAAATGGCTTTCACTGTTGGAGGTGATCTTGAATCCAGAATCTGTCCGCAAAAAAGAGAAAGAAAAGCAGATTTGGGTGACCTCAAAAGTTTCAAACTACCTTCCCACGTATC-----aaaaaaaaaaaaaaaaaaaaaaa-----------------CCTTCATTTTTaatatataaagacactgaaaattcaacagttt-taaaaaatcaataaaataggaaaatg----aaacacatgacaaatatttcctttaaaaggatgtgtagatgggaagtaaggacagaaaaatgtggtccatatgcggagcttgcagtgagccgagatcgcgccactgcaccccagcctgggcgacagagcgagactccgtttcaaaaaaaaaaaa-----------------------GTGgttcatatgattcatcattggggaaatgcaattaaaaccattatgagatattactacacccctatcagattgaataaaataaaaaatagaaataacaccacatgctggatgtggagaaaatggctgaatcactcattgctggtaggaatgtaaaatggtacagccactctagaaactagagtatggcgagaaaaaa-------aaaaaataaactaaacatgccattgcactctagggcatttatcccagagaaatgaacacttaagttcacccagaaatcagcatacagcatataaaggttcgtagcagAGCAGAGACCTGAGCAGAAAAAAAAA--------------------AAAA--CTGACTGG
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             29911719 858 -  71996105 AAAGATGGAGAAGTGTCTTCCAAGAGCCCCTAGAGAGAGAGGACACTCCATTCCTGGACGTTATATTCTGCAGCCAGCT-GCTGGGAAATCCCAAGGGCAATGCCACCAGGTTGGGGTATTCTGGGCCCAGGGCACACAAAAATGGCTTCCACTGTTGGAGAAGATCTTGAATCCAGAATCTGTCCCCCAAAAAGAGAAAGAAAAGCAGATTTGGGTGACCTCAAAAGTTT-------------CACATATC-------AAAAAAACAAACAAACAAAAA---------------CCCCTTCATTTTTaatatataaagacactgaaaattcaacagtct--aaaaaatcaataaaataggaaagtggacaaagcacatgacaaatatttcctttaaaaggatatgcagatgggaagtaaggacgtaaaaatacggtccatatgtggagcttgcagtgagctgagatcgggccactgcactccagcctgggcgacaaagtgagactctgtctcaaaaaaaaaaaa----------------------TGtggtccacatgattcattattgtggaaatgcaattaaaaccattatgagatattactacacccctgtcagattgaataaaataagaaatagaaacaacaccacatgctggatgtggagaaaatgactgaatcactcattgctggtgggaatgtaaaattgtacaggcactctagaaactagagtatgacacacacaca---cacaaaaaaaaaaactaaacatgccattgcactctagagcatttatcccagggaaatgaacacttaagttcacacagaaatcaacgtacagcatataaaggttcgtagcagAGCAGAGACCTGAGTGGAAaaaacaaaacaaaacaaaacaaaaccaaaaACCCTCACTGG
i chlSab2.chr17            I 313 C 0
e otoGar3.GL873550            654276 69887 +  18854210 T
e aotNan1.NW_018496901v1      386756 44601 -    486031 I
e cebCap1.NW_016107755v1     1194537 25008 -   1771730 I
e calJac3.chr4              30759037 29019 + 171630274 I
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457  22 +    735854 I
e cerAty1.NW_012002535v1      108975  22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509   0 + 170955103 I
e rheMac8.chr4             141479194   0 - 172585720 I

a score=434684.000000
s hg38.chr6_GL000254v2_alt   1789470 353 +   4827813 CACAGCCAGACAGAATCAGTTCTGGAAACTCCCAAAAGAACTAGAAGCCACCAAGACCGGCAGCCCACCTTGGGCAGTGACAGTTTCTGCTCAAGGGAGACACAACCTGAAGAAGGAAAACAAGACCAAAATTGAGAA----GCAATCTTTTAATCACAGTGTTTGCAAACACAT----agccaggaaagaatgttagcacagaggtcagaaaggcagtcactcatggagctaggaaaggga-agaggtgtgatgggag-ggggcaag---------caaggcatttgt-gggacactggacaactgtgcttct----tgacctaggtggtgcttgtgtggtc---atagtcgctagttaaatattgtgtacatttgtaa
s panTro5.chr6              30635646 353 + 175400573 CACAACCAGACAGAATCAGTTCTGAAGACTCCCAAAAGAACTAGAAGCCACCAAGACCGGCAGCCCACCTTGGGCAGCGACAGTTTCTGCTCAAGGGAGACACAACCTGAAGAAGGAAAACAAGACCAAAATTGAGAA----GCAATCTTTTAATCACAGTGTTTGCAAACACAT----agccaggaaagaatgtcagcacagaggtcagaaaggcagtcactcatggagctaggaaaggga-agaagtgtgatgggag-ggggcaag---------caaggcatttgt-ggggcactggacaactgtgcttct----tgacctaggtggtgcttgtgtggtc---atagtcgctagttaaatattgtgtacatttgtaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31059609 353 + 173848474 CACAACCAGACAGAATCAGTTCTGAAGACTCCCAAAAGAACTAGAAGCCACCAAGACCGGCAGCCCACCTTGGGCAGCGACAGTTTCTGCTCAAGGGAGACACAACCTGAAGAAGGAAAACAAGACCAAAATTGAGAA----GCAATCTTTTAATCACAGTGTTTGCAAACACAT----agccaggaaagaatgttagcacagaggtcagaaaggcagtcactcatggagctaggaaaggga-agaagtgtgatgggag-ggggcaag---------caaggcatttgt-ggggcactggacaactgtgcttct----tgacctaggtggtgcttgtgtggtc---atagtcgctagttaaatattgtgtacatttgtaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      564951 349 +   2037526 CACAGCCAGACAGAATCAGTTCTGAAGACTCCCAAAAGAACTAGAAACCACCAAGACCGGCAGCCCACCTTGGGCAGCGACAGTTTCTGCTCAAGGGAGACACAACCTGAGGAAGGAAAACAAGACC-AAATTGAGAT----GCAGTCTTTTAATCACAGTGTTTGCAAACACAT----AGCCaggaaggaatgttagcacagaggtcagaaaggcagtcactcatggagct-ggaaaggga-agaggtgtgatggga--ggggcaag---------caaggcatttgt-ggggcactggacaactgtgcttct----tgacctacgtggtgcttgtgtggtc---atagtcgct-gttaaatattgtgtacatttgtaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75222232 352 + 122973662 CACAGCCAGACAGAATCAGTTCTGAAGACTCCCAAAGGAACTAGAAGCCACCAAGACCGGCAGCCCACTTTGGGCAGTGACCGTTTCTGCTCAAGGGAGACACAACCTGAAAAAGGAAAACAAGACCAAAATTGAGAA----GCAATCTTTTAATCACAGTGTTTGCAAACACAC----AG-GGGGagagaatgttagcacagaggtcagaaagatggtggctcctggagctaggaaaggga-aggggtgtgatgggag-ggggcaag---------caaggcatctgt-ggggcactggacaactgtgcttct----tgacctgggtggtgcttgtgtgttc---atagtcactagttaaatattgtgtttgtttgtaa
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             29912577 334 -  71996105 CACAGTCAGACAGAATCAGTTCT--------------GAACTAGAAGCCACCAAGACCAGCAGCCCACCTTGGGGAGTGACAGTTTCTGCTCAAGGGAGACACAACCTGAAGAAGGAAAACA------AAACTGAGAA----GCAATCTTTTAATCACAGCGATTGCAAACACATTGGGGGACGGGGGAGaatgttagcacagaggtcagaaatgtggtcactcctggagctaggaaacgga-aggggtgtgatgggagaggggtaag---------caaggcatttgt-gggacactggacaatcttgcttcc----tgatctgggtggtacttgcgtggtc---atagtcact----aaatattgcatatgtttgtaa
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550            584389 359 +  18854210 CACAGCCAGAGGGAGGCAGCTCTAAGCGCTCCTGTGGTGATCACAGCCCACCAGGACCTGGGGCTGGAGGTGCTCCATGAGATTCTCAGGGCAGTGGGA--ACTGCCTGAGGGTGAGAAGGAAAAGCTAGATTCGGGAGGTTGCTGTGTGTT--TCACAGAGACTGCAAACATAC-------TGGAAAAGCATG-----GAGAAGGAGGGGAAGATAGT--TTAAGGGCCCTGGGGTGAGGACAGAAGTGTAGGGGGGA-GGGGTATGGTGGACACCCTGGGCACTCATGGGGGTGGGGGGCAGGTTTACTCCTAGAATGGACTGTG-GATACTTGAG-GGTCAGGATAATTACTAAGAGAAGATTCCCTATATGTGTAA
i otoGar3.GL873550         T 69887 I 6087
e aotNan1.NW_018496901v1      386756 44601 -    486031 I
e cebCap1.NW_016107755v1     1194537 25008 -   1771730 I
e calJac3.chr4              30759037 29019 + 171630274 I
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457  22 +    735854 I
e cerAty1.NW_012002535v1      108975  22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509   0 + 170955103 I
e rheMac8.chr4             141479194   0 - 172585720 I

a score=226507.000000
s hg38.chr6_GL000254v2_alt   1789823 174 +   4827813 gtaacttttctgcatatattttatatctcac-----aaaaaaaga----aaAGAGATCAGACTCCTCCCAGAAAAACAATGAAAGAAGGAGGTGTCACACCAAGATCAGTCAAACCTCCTTCCTACATTTGTAAATCCATCcaagcactagctctgtgaccctcagtttcctcatctctaTTG
s panTro5.chr6              30635999 174 + 175400573 gtaacttttctgcatatattttatatctcac-----aaaaaaaga----aaAGAGATCAGACTCCTCCCAGAAAAACAATGAAAGAAGGAGGTGTCACACCAAGATCAGTCAAACCTGCTTCCTACATTTGTAAATCCATCCAAGCACTAGCTATGTGACCCTCAGTTTCCTCATCTCTATTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31059962 174 + 173848474 gtaacttttctgcatatattttatatctcac-----aaaaaaaga----aaAGAGATCAGACTCCTCCCAGAAAAACAATGAAAGAAGGAGGTGTCACACCAAGATCAGTCAAACCTGCTTCCTACATTTGTAAATCCATCCAAGCACTAGCTATGTGACCCTCAGTTTCCTCATCTCTATTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      565300 174 +   2037526 gtaacttttctgcttatattttatatctcac-----aaaaaagga----aAAGAGATCAGACTCCTCCCAGAAAAACAGTGAAAGAAGGAGGTGTCACACCAAGATCAGCCAAACCTGCTTCCTACATTTGTAAATCCATCcaagcactagctctgtgaccctcagtttcctcatctctaTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75222584 179 + 122973662 gtaacttttctgcatatattttatatctcacagtgtaaaaAAAGA----AAAGAGATCAGACTCCTCCCAGAAAAACAATGAAAGAAGGAGGTATCACACCAAGATCAGTCAAACCTGCTTCTTGCATTTGTAAATCCATCCAAGCACTAGCTCTGTGACCCTCAGTTTCCTCATCTCTATTG
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             29912911 183 -  71996105 gtaacttttctgcatatattttatatcccacaatgtaaaaAAAGAAAAGAAAGAGATCAGACTTCTCCCAGAAAAACAATGAAAGAAGGAGGTGTCATACTAAGATCAGTCAAACCTGCTTCTTGCATTTACAAATCCATCcaagcactagctctgtgaccctcagtttcctcatctgtaTTG
i chlSab2.chr17            C 0 C 0
e otoGar3.GL873550            584748 6087 +  18854210 I
e aotNan1.NW_018496901v1      386756 44601 -    486031 I
e cebCap1.NW_016107755v1     1194537 25008 -   1771730 I
e calJac3.chr4              30759037 29019 + 171630274 I
e colAng1.NW_012115577v1      566435 15909 -   1829203 I
e manLeu1.NW_012107142v1       72457  22 +    735854 I
e cerAty1.NW_012002535v1      108975  22 +    863181 I
e macNem1.NW_012012100v1      842792 12157 -   1495729 I
e macFas5.chr4             140556509   0 + 170955103 I
e rheMac8.chr4             141479194   0 - 172585720 I

a score=1115635.000000
s hg38.chr6_GL000254v2_alt  1789997 193 +   4827813 AGACTCAGCATCTGCAAGAGTTTAAGAACAAGACCATGGGTAGATCATACTGTCATAAAATAGAATCTGTTTCTTGTGATACAACATGAGGGACCCCACCTCACCCCCCAAAATAGGTACTGAACAAAGGTTCCTATTCCCAGAAACCCCCTCTTCCATCTTTGGATTCATCCCTGAGATTGCAGAATGCTTC
s panTro5.chr6             30636173 193 + 175400573 AGACTCAGCATCTGCAAGAGTTTAAGAACAAGACCATGGGTAGATCATACTGTCATAAAATAGAATCTGTTTCTTGTGATTCAACATGTGGGACCCCACCTCACCCCCCAAAATAGGTACTGAACAAAGGTTCCTATTCCCAGAAACCCCCTCTTCCATCTTTAGATTCATCCCTGAGATTGCAGAATGCTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31060136 193 + 173848474 AGACTCAGCATCTGCAAGAGTTTAAGAACAAGACCATGGGTAGATCATACTGTCATAAAATAGAATCTGTTTCTTGTGATTCAACATGTGGGACCCCACCTCAACCCCCAAAATAGGTACTGAACAAAGGTTCCTATTCCCAGAAACCCCCTCTTCCATCTTTAGATTCATCCCTGAGATTGCAGAATGCTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     565474 193 +   2037526 AGACTCAGCATTTGCAAGAGTTTAAGAACAAGACCATGGGTAGATCATACTGTCATAAAATAGAATCTGTTTCTTGTGATTCAACATGAGGGACCCCACCTCACCTCCCAAAATAGGTACTGAACAAAGGTTCCTATTCCCAGAAACCCCCTCTTCCATCTTTAGATTCATCCCTGAGATTGCAGAATGCTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75222763 193 + 122973662 AGACTCAGCATCTGCAAGGGTTTAAGAACAAGACCATGGGTAGATCATATTGTCATAAAATAGAATCTGTTTCTTGTGATTCAACATGAGGGACCCCACCTCAATCCCCAAAATAGGTACTGAACAAAGGTTCCTATCCCCAGAACCCCCCTCCTCCATCTTTAGATTCATCCCTGAGATTGCAGAATGCTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31126766 193 + 172585720 AGACCCAGCATCTGCAAGGGTTTAAAAACAAGACCATGAGTAGATCATACTATCATAAAATAGAATCTGTTTCTTGTAATTCAACATGAGAGACCCCACCTCATCCCCCAAAATAGGTACTGAACAGAGGTTCCTATCCCCAGAACCCCCCTCCTCCATCTTTAGATCCATCCCTGAGATTGCAGAATGCTTC
i rheMac8.chr4             I 12132 C 0
s macFas5.chr4             30418822 193 - 170955103 AGACCCAGCATCTGCAAGGGTTTAAAAACAAGACCATGAGTAGATCATACTATCATAAAATAGAATCTGTTTCTTGTAATTCAACATGAGAGACCCCACCTCATCCCCCAAAATAGGTACTGAACAGAGGTTCCTATCCCCAGAACCCCCCTCCTCCATCTTTAGATCCATCCCTGAGATTGCAGAATGCTTC
i macFas5.chr4             I 12127 C 0
s macNem1.NW_012012100v1     673465 193 +   1495729 AGACCCAGCATCTGCAAGGGTTTAAAAACAAGACCATGAGTAGATCATACTATCATAAAATAGAATCTGTTTCTTGTAATTCAACATGAGAGACCCCACCTCATCCCCCAAAATAGGTACTGAACAGAGGTTCCTATCCCCAGAACCCCCCTCCTCCATCTTTAGATCCATCCCTGAGATTGCAGAATGCTTC
i macNem1.NW_012012100v1   I 12157 C 0
s cerAty1.NW_012002535v1     775018 193 -    863181 AGACCCAGCATCTGCAAGCGTTTAAAAACAAGACCATGAGTAGATCATACTATCATAAAATAGAATCTGTTTCTTGTGATTCAACATGAGAGACCCCACCTCATCCCCCAAAATAGGTACTGAACAGAGGTTCCTATCCCCAGAACCCCCCTCCTCCGTCTTTAGATCCATCCCTGAGATTGCAGAATGCTTC
i cerAty1.NW_012002535v1   I 13788 C 0
s chlSab2.chr17            29913094 192 -  71996105 AGACCCAGCATCTGCAAGGGTTTAAAAACAAGACCATGAGTAGATCATACAATCATAAAATAGAATCTGTTTCTTGTGATTCAACATGAGAGACCCCACCTCATCCCCCAAAATAGGTACTGAACAAAGGTTCCTATCCCCAGAA-CCCCCTCCTCTGTCTTTAGATTCATCCCTGAGATTGCAGAATGCTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     690829 193 -    735854 AGACCCAGCATCTGCAAGGGTTTAAAAACAAGACCATGAGTAGATCATACTATCATAAAATAGAATCTGTTTCTTGTGATTCAACGTGAGAGACCCCACCTCATCCCCCAAAATAGGTACTGAACAGAGGTTCCTATCCCCAGAACCCCCCTCCTCCGTCTTTAGATCCATCCCTGAGATTGCAGAATTCTTC
i manLeu1.NW_012107142v1   I 19074 C 0
s colAng1.NW_012115577v1     582344 193 -   1829203 AGACCCAGCATCTGCAAGGGTTTAAAAACAAGACCATGAGTAGATCATACTATCATAAAATAGAATCTGTTTCTTGTGATTCAACATGAGAGACCCCACCTCACCCCCCAAAATAGGTACTGAACAAAGGTTCCTATCCCCAGAATCCCCCTCCTCCGTCTTTAGATTCATCCCTGAGATTGCAGAATGCTTC
i colAng1.NW_012115577v1   I 15909 C 0
e otoGar3.GL873550           584748 6087 +  18854210 I
e aotNan1.NW_018496901v1     386756 44601 -    486031 I
e cebCap1.NW_016107755v1    1194537 25008 -   1771730 I
e calJac3.chr4             30759037 29019 + 171630274 I

a score=88624.000000
s hg38.chr6_GL000254v2_alt  1790190 14 +   4827813 TGGCTGAAGGCAAA
s panTro5.chr6             30636366 14 + 175400573 TGGCTGAAGGCAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31060329 14 + 173848474 TGGCTGAAGGCAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     565667 14 +   2037526 TGGCTGAAGGCAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75222956 14 + 122973662 TGGCTGAAGGCAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31126959 14 + 172585720 TGGCCGAAGGCAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30419015 14 - 170955103 TGGCCAAAGGCAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     673658 14 +   1495729 TGGCCGAAGGCAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     775211 14 -    863181 TGCCCGAAGGCAAA
i cerAty1.NW_012002535v1   C 0 I 1126
s chlSab2.chr17            29913286 14 -  71996105 TTGCTGAAGGCAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     691022 14 -    735854 TGGCCGAAGGCAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     582537 14 -   1829203 TGGCTGAAGGCAAA
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           590835 14 +  18854210 tggatgaggGCAAA
i otoGar3.GL873550         I 6087 C 0
e aotNan1.NW_018496901v1     386756 44601 -    486031 I
e cebCap1.NW_016107755v1    1194537 25008 -   1771730 I
e calJac3.chr4             30759037 29019 + 171630274 I

a score=3564293.000000
s hg38.chr6_GL000254v2_alt  1790204 677 +   4827813 GCCCCATCTTTATGATTCCCCTCCTCCTTCGTCCACCTCTCCAAGATGTAGGCTTCTCCCTCATGCCTCAGACTCCAGGGCCTGTTCCAGGGTCAGGATCAT-AGTTCCCTTCTTCAGAGAGGAACTCTTAATGAAGCTGACC---------------CAATTTGCTCTGGAGAGCACTGGAGGCACCTGCTAAGCCTCTCCCTTCAGTGGAGAGAAATTCCAGTGGAATCCCAGAGACCCTTGGCAAACCCACTGCAGACCACCCTGCTGAACCCATCTCCACACTCACCACTGCAAGGAAACTTCAAACTGAGTTCTACTAAAAAGCAATTTCGGCTCTTACACTTCCTCTTTAGTGTTCTTCTAGCTTACTAGGCAA-GTAACCACAGTGTGCCTCCATTAATTAATAAATCCCCAAAACAC--TGGTCTTATGAACAGtgtattgatcagggctctccacagaagcagaatgaataggcg---acatat---atctccagttgatctgatgaggcccactcacattatggagggcaatgtacattagtcaattccactgatttaaatgtaaatcatttttcgaacacactcatgggaatacctagaataatgtttggccaaatatctgggctccttcgtgacccagtcatgttgagaaatcaaattaatcctcacaaggaacaaatcagataatattc
s panTro5.chr6             30636380 673 + 175400573 GCCCCATCTTTATGATTCCCCTCATCCTTCGTCCACCTCTCCAAGATCTAGGCTTCTCCCTCATGCCTCAGACTCCAGGGCCTGTTCCAGGGTCAGGATCAT-AGTTCCCTTCTTCAGAGAGGAACTCTTAATGAAGCTGACC---------------CAATTTCCTCTGGAGAGCACTGGAGGCACCCGCTAAGCCTCTCCCTTCAGTGGAGAGAAATTCCAGTGGAATCCCAGAGACCCTTGGCAAACCCACTGCAGACCACCCTGCTGAACCCATCTCCACACTCACCACTGCAAGGAAACTTCAAACTGAGTTCTACTAAAAAGCAATTTCGGCTCTTACACTTCCTCTTTAGTGTTCTTCTAGCTTACTAGGCAA-GTAACCACAGTGTGCCTCCATTAATTAATAAATCCCCAAAACAC--TGGTCTTATGAACAGtgtattgatcagggctctccacagaagcagaatgaataggag---acatat---aTctccaattgatctgatgaggcccactcacattatggagggcaatgcacattagtcaattccactgatttaaatgtaaatcatttttcgaacacactcatgggaatacctagaataatgtttggccaaatatctgggccccttcgtgacccagtcatgttgagaaatcaaatca----tcacaAGGAACAAATCAGATAATATTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31060343 673 + 173848474 GCCCCATCTTTATGATTCCCCTCGTCCTTCGTCCACCTCTCCAAGATCTAGGCTTCTCCCTCATGCCTCAGACTCCAGGGCCTGTTCCAGGGTCAGGATCAT-AGTTCCCTTCTTCAGAGAGGAACTCTTAATGAAACTGACC---------------CAATTTCCTCTGGAGAACACTGGAGGCACCCGCTAAGCCTCTCCCTTCAGTGGAGAGAAATTCCAGTGGAATCCCAGAGACCCTTGGCAAACCCACTGCAGACCACCCTGCTGAACCCATCTCCACACTCACCACTGCAAGGAAACTTCAAACTGAGTTCTACTAAAAAGCAATTTCGGCTCTTACACTTCCTCTTTAGTGTTCTTCTAGCTTACTAGGCAA-GTAACCACAGTGTGCCTCCATTAATTAATAAATCCCCAAAACAC--TGGTCTTATGAACAGtgtattgatcagggctctccacagaagcagaatgaataggag---acatat---aTctccaattgatctgatgaggcccactcacattatggagggcaatgcacattagtcaattccactgatttaaatgtaaatcatttttcgaacacactcatgggaatacctagaataatgtttggccaaatatctgggccccttcgtgacccagtcatgttgagaaatcaaatca----tcacaaggaacaaatcagataatattc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     565681 677 +   2037526 GCCCCATCTTTATGATTCCCCTCCTCCTTCGTCCACCTCTCCAAGATCTAGGCTTCTCCCTCATGCCTCAGACTCCAGGGCCTGTTCCAGGGTCAGGATCAT-AGTTCCCTTCTTCAGAGAGGAACTCTTAATGAAGCTGACC---------------CAATTTCCTCTGGAGAGCACTGGAGGCACCCGCTAAGCCTCTCCCTTCAGTGGAGAGAAATTCCAGTGGAATCCCAGAGACCCCTGGCAAACCCACTGCAGACCACCCTGCTGAACCCATCTCCACACTCACCACTGCAAGGAAACTTCAAACTGAGTTCTACTAAAAAGCAATTTCGGCTCTTACACTTCCTCTTTAGTGTTCTTCTAGCTTACTAGGCAA-GTAACCACAGTGTGCCTCCATTAATTAATAAATCCCCAAAACAC--TGGTCTTATGAACAGtgtattgatcagggctctccacagaagcagaatgaacaggag---acatat---aTctccaattgatctgatgaggcccactcacattatggagggcaatgtacattagtcaattccactgatttaaatgtaaatcatttttcgaacacactcatgggaatacctagaataatgtttggccaaatatctgggctccttcgtgacccagtcatgttgagaaatcaaattaatcatcacaAGGAACAAATCAGATAGTATTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75222970 676 + 122973662 GCCCCATCTTTACGATTCCCCTCCTCCTTCGTCCGCCTCTCCAAGATCTAGGCTTCTCCCTCATGCCTCAGACTCCAGTGCCTGTTCCAGGGTCGGGATCAT-GGTTCCCTTCTTCAGAGAGGAACTCTTAATGAAGCTGACC---------------CAATTTCTTCTGGAGAGCACTGGAGGCACCCTCTAAGCCTCTCCCTTCAGTGGAGAGAAATTCCAGTGGAATCCCAGAGACCCTTGGCAAACCCACTGCAGACCACCCTACTGAACCCATCTCCACACTCACCATGGCAA-GAAACTTCAAACTGAGTTCTACTAAAAAGCAATTTCGGCTCTTACACTTCCTCTTTAGTGTTCTTCTAGCTTACTAGGCAA-GTAACCACAGTGTGCCTCCATTAATTAATAAATCCCCAAAACAC--TGGTCTTATGAACAGtgcattgatcagggctctctacagaagcagaatgaataggag---acatat---aTctgcaattgatctgatgaggcccactcacattatggagggcaatgtacattagtcaattccactgatttaaatgtaaatcatttttcgaacacactcatgggaatacctagaataatgttaggccaaatatctgggctcctttgtgacccaatcatgttgagaaatcaaattaatcatcacaAGGAACAAATCAGATAATATTC
i nomLeu3.chr1a            C 0 I 37
s rheMac8.chr4             31126973 678 + 172585720 GCCCCATCTTTATGATTCCCCTCCTCCTTCCTCCACCTCTCCAAGATCCAGGCTTCTTCCTCATGCCTCAGACTCCAGGGCCTGCTCCAGGGTCAGGATCATCAGTTCCCTTCTTCAGAGAGGAACTCTTAATGAAGCTGACC---------------CAATTTCCTCTGGAGATCACTGGAGGCACCCTCTAAGCCTCTCCCTTCAGTGGAGAGAAATTTCGGTGGAATCCCAGAGACTCTTGGCAAACCCACTGCAGACTACCCTGCTGAACCCATCTTCACACTCACCACTGCAAGGAAGCTTCAAACTGAGTTCTACTAAAAAGCAATTTTGGCTCTTACACTTCCTCTTTAGTGTTCTTCTAGCTTACTAGGCAA-GTAACCACACTGTGCCTCCATTAATTAATAAATCCCCAAAACAC--TGGTGTTATGAACAGtgtattgatcaaggctctccacagaagcagaatgaataggag---gcatat---aTctccgattgatctgatgaggcccactgacattatggagggcaatgtacattagtcaattccactgatttaaatgtaaatcattttttgaacacactcatgggaatacctagaataacgtttggccaaatatctgggcttctttgtgacccagtcacattgagaaactaaattaatcatcacaAGGAACAAATCAGATAGTATTT
i rheMac8.chr4             C 0 I 339
s macFas5.chr4             30419029 678 - 170955103 GCCCCATCTTTATGATTCCCCTCCTCCTTCCTCCACCTCTCCAAGATCCAGGCTTCTTCCTCATGCCTCAGACTCCAGGGCCTGCTCCAGGGTCAGGATCATCAGTTCCCTTCTTCAGAGAGGAACTCTTAATGAAGCTGACC---------------CAATTTCCTCTGGAGATCACTGGAGGCACCCTCTAAGCCTCTCCCTTCAGTGGAGAGAAATTTCGGTGGAATCCCAGAGACTCTTGGCAAACCCACTGCAGACTACCCTGCTGAACCCATCTTCACACTCACCACTGCAAGGAAGCTTCAAACTGAGTTCTACTAAAAAGCAATTTTGGCTCTTACACTTCCTCTTTAGTGTTCTTCTAGCTTACTAGGCAA-GTAACCACACTGTGCCTCCATTAATTAATAAATCCCCAAAACAC--TGGTGTTATGAACAGTGTATTGATCAAGGCTCTCCACAGAAGCAGAATGAATAGGAG---GCATAT---ATctccgattgatctgatgaggcccactgacattatggagggcaatgtacattagtcaattccactgatttaaatgtaaatcattttttgaacacactcatgggaatacctagaataacgtttggccaaatatctgggcttctttgtgacccagtcacattgagaaactaaattaatcatcacaAGGAACAAATCAGATAGTATTT
i macFas5.chr4             C 0 I 339
s macNem1.NW_012012100v1     673672 678 +   1495729 GCCCCATCTTTATGATCCCCCTCCTCCTTCCTCCACCTCTCCAAGATCCAGGCTTCTTCCTCATGCCTCAGACTCCAGGGCCTGCTCCAGGGTCAGGATCATCAGTTCCCTTCTTCAGAGAGGAACTCTTAATGAAGCTGACC---------------CAATTTCCTCTGGAGATCACTGGAGGCACCCGCTAAGCCTCTCCCTTCAGTGGAGAGAAATTTCGGTGGAATCCCAGAGACTCTTGGCAAACCCACTGCAGACTACCCTGCTGAACCCATCTTCACACTCACCACTGCAAGGAAACTTCAAACTGAGTTCTACTAAAAAGCAATTTTGGCTCTTACACTTCCTCTTTAGTGTTCTTCTAGCTTACTAGGCAA-GTAACCACACTGTGCCTCCATTAATTAATAAATCCCCAAAACAC--TGGTGTTATGAACAGtgtattgatcaaggctctccacagaagcagaatgaataggag---gcatat---aTctccgattgatctgatgaggcccactcacattatggagggcaatgtacattagtcaattccactgatttaaatgtaaatcattttttgaacacactcatgggaatacctagaataatgtttggccaaatatctgggcttctttgtgacccagtcacattgagaaactaaattaatcatcacaAGGAACAAATCAGATAGTATTT
i macNem1.NW_012012100v1   C 0 I 346
s chlSab2.chr17            29913300 678 -  71996105 GCCCCATCTTTACGATTCCTCTCCTCCTTCCTCCACCTATCCAAGATCCAGGCTTCTTCCTCATGCGTCAGATTCCAGGGCCTGCTCCAGGGTCAGGATCATCAGTTCCCTTCTTCAGAGAGGAACTCTTAATGAAGCTGACC---------------CAATTTCCTCTGGAGATCACTGGAGGCACCCTCTAAGCCTCTCCCTTCAGTGGAGAGAAATTTCAGTGGAATCCCAGAGACTCTTGGCAAACCCACTGCAGACTACACTGCTGAACCCATCTTCACACTCACCACTGAAAGGAAACTTCAAACTGAGTTCTACTAAAAAGCAATTTCGGCTCTTACACTTCCTCTTTAGTGTTCTTCTAGCTTACTAGGCAA-GTAACCACACTGTGCCTCCATTAATTAATAAATCCCCAAAACAC--TGGTGTTATGAACAGTGTATTGATCAAGGCTCTCCAAAGAAGCAGAATGAATAGGAG---ACATAT---ATctccaattgatctgatgaggcccactgacattatggagggcaatgtacattagtcaattccactgatttaaatgtaaatcatttttcgaacacactcacaggaatacctagaataatgtttggccaaatatctgggctcccttgtgacccagtcacattgagaaatcaaattaatcatcacaAGGAACAAATCAGATAACATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     691036 678 -    735854 GCCCCATCTTTATGATTCCCCTCCTCCTTCCTCCACCTCTCCAAGATCCAGGCTTCTTCCTCATGCCTCAGACTCCAGGGCCTGCTCCAGGGTCAGGATCATCAGTTCCCTTCTTCAGAGAGGAACTCTTAATGAAGCTGACC---------------CAATTTCCTCTGGAGATCACTGGAGGCACCCTCTAAGCCTCTCCCTTCAGTGGAGAGAAATTTCGGTGGAATCCCAGAGACTCTTGGCAAACCCACTGCAGACTACGCTGCTGAACCCATCTTCACACTCACCACTGCAAGGAAACTTCAAACTGAGTTCTACTAAAAAGCAATTTTGGCTCTTACACTTCCTCTTTAGTGTTCTTCTAGCTTACTAGGCAA-GTAACCACACTGTGCCTCCATTAATTAATAAATCCCCAAAACAC--TGGTGTTATGAACAGtgtattgatcaaggctttccacagaagcagaatgaataggag---gcatat---aTctccaattgatctgatgaggcccactgacattatggagggcaatgtacattagtcaattccactgatttaaatgtaaatcattttttgaacacactcatgggaatacctagaataacgtttggccaaatacctgggcttctttgtgacccagtcacattgagaagccaaattaatcatcacaAGGAACAAATCAGATAGTATTT
i manLeu1.NW_012107142v1   C 0 I 340
s colAng1.NW_012115577v1     582551 673 -   1829203 GCCCCATCTTTACAATTCCTCTCCTCCTTCCTCCACCTATCCAAGATCCAGGCTTCTTCCTCATGCCTCAGACTCCAGGGCCTGTTTCAGGGTCAGGATCATCAGTTCCCTTCTTCAGAGAGGAACTCTTAATGAAGCTGACC---------------CAATTTCCTCTGGAGATCACTGGAAGCACCCTCTAAGCCTCTCCCTTCA---GAGAGAAATTCCAGTGGAATCCCAGAGACTCTTGGCAAACCCACTGCAGACTACCCTGCTGAACCCATCTCCACACTCGCCACTGTAAGGAAACTTCAAACTGAGTTCTACTAAAAAGCAATTTCGGCTCTTACACTTCCGCTTTAGTGTTCTTCTAGCTTACTAGACAA-GTAACCACACTGTGCCTCCATTAATTAATAAATCCCTAAAACAC--TGGTGTTATGAACAGtgtattgatcaaggctctccacagaagcagaatgaataggag---gcatat---aTctccaactgatatgatgaggcccactgacattatggagggcaa--tacattagtcaattccactgatttaaatgtaaatcatttttcgaacacaatcacgggaatacctagaataacgtttggccaaatatctgggctcctttgtgacccagtcacgttgagaaatcaaatgaatcatcacaAGGAACAAATCAGATAATATTT
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           590849 657 +  18854210 GTCCCATCTTAATGATGCCCCTTCCCCTTGGCCCACCTGTCCAGCACACAGCCCTCTCCCTCCTGCCTCAGACATCAGAACCTGTACCAGCATCAGGCTCATCACTTCCTCCCCTCAGGGAGAGACTCTCAGTGAAGCTCATCCAGGGAGTCTGCTCACAGGCTCCTCTAAGGAGTACTAGGGGCATCCTCTACGCCTTTCT----------------TTCCAGCAGATTTCCAGGGATCTCCAGCAAGCTCACTGCAGACCACACTGCTGACCCCTTCTCCATTCCCCACAACCTGGGGGAAGCTCACAATGAGTTCTCCCAAAAAGCAATTTCTCTTCTCCCACTATCTCTATAGTGTTCTTTCTAGTTGCTAAGCAAGGTAACCACACTGGGCATCAGTTAATCTTTCAATTCCTATAACACTGTGGTGTTATGAACAGTGTAGTAGTTA-GTTTCTCCACAGAAACAGAACAAGTAGAAGGATACATATATAATcttcacctgatttgatgacagccacctatacgatggaaggcaatgttcatgactcaagtttactgatttaaaagtaccttatatc----------------------------tgctgtttgaccaaatgtctgtgctacctcatggcccagtcatgttaacaaatcaaattaatcatcacaagaagcaaatgagataacatcc
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018496901v1     386756 44601 -    486031 I
e cebCap1.NW_016107755v1    1194537 25008 -   1771730 I
e calJac3.chr4             30759037 29019 + 171630274 I
e cerAty1.NW_012002535v1     775225 1126 -    863181 I

a score=389941.000000
s hg38.chr6_GL000254v2_alt  1790881 75 +   4827813 acttggatattagactagagccttggacataccaagtgctctgtaaatgttagCCTTACAAATGTAAGGTGGTGT
s panTro5.chr6             30637053 75 + 175400573 ACTTGGATATTAGACTAGAGCCTTGGACATACCAAGTGCTCTGTAAATGTTAGCCTTACAAATGTAAGGTGGTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31061016 75 + 173848474 acttggatattagactagagccttggacataccaagtgctctgtaaatgttagCCTTACAAATGTAAGGTGGTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     566358 75 +   2037526 ACTTGGATAttagactagagccttggacataccaagtgctctgtaaatgttagCCTTACAAATGTAAGGCGGTGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75223683 75 + 122973662 TATTGGATATTAGACTAGAGCCTTCGACATACCAAGTGCTCTGTAAATGTTAGCCTTACAAATGTAAGGCGGTGT
i nomLeu3.chr1a            I 37 C 0
s rheMac8.chr4             31127990 75 + 172585720 ACTTGGATAttagactagagtcttggacatactaagtgctctgtaaatgttagccttatAAATGTAAAGCGGTGT
i rheMac8.chr4             I 339 C 0
s macFas5.chr4             30420046 74 - 170955103 ACTTGGATATTAGACTAGAGTCTTGGACACACTAAGTGCTCTGT-AATGTTAGCCTTACAAATGTAAAGCGGTGT
i macFas5.chr4             I 339 C 0
s macNem1.NW_012012100v1     674696 75 +   1495729 ACTTGGATAttagactagagtcttggacatactaagtgctctgtaaatgttagccttatAAATGTAAAGCGGTGT
i macNem1.NW_012012100v1   I 346 C 0
s chlSab2.chr17            29913978 75 -  71996105 ACTTGGATATTAGACTAGAGTATTGGACATACTGAGTGCTCTGTAAATGTTAGCCTTACAAATGTAAAGCGGTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     692054 74 -    735854 ACTTGGATATTAGACTAGAGTCTTGGACATACTAAGTGTTCTGT-AATGTTAGCCTTACAAATGTAAAGTGGTGT
i manLeu1.NW_012107142v1   I 340 C 0
s colAng1.NW_012115577v1     583224 75 -   1829203 ACTTGGATATTAGACTAGAGTATTGGACATACTGAGTGCTCTGTAAATGTTAGCCTTACAAATATAAAGCGGTGT
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           591506 75 +  18854210 ctttggatcttagactacagacttggatataggaagtgctccgtgaatgttggCCTTACAAATGTGAGGAACTAC
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018496901v1     386756 44601 -    486031 I
e cebCap1.NW_016107755v1    1194537 25008 -   1771730 I
e calJac3.chr4             30759037 29019 + 171630274 I
e cerAty1.NW_012002535v1     775225 1126 -    863181 I

a score=398115.000000
s hg38.chr6_GL000254v2_alt  1790956 60 +   4827813 TTTAGAT-TTACAGAACACAGTATATCCTAAGGTATCACAGGCTTGTTGATGAACTCTGTT
s panTro5.chr6             30637128 60 + 175400573 TTTAGAT-TTACAGAACACAGTAGATCCTAAGGTATCACAGGCTTGTTGATTAACTCTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31061091 60 + 173848474 TTTAGAT-TTACAGAACACAGTAGATCCTAAGGTATCACAGGCTTGTTGATTAACTCTGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     566433 60 +   2037526 TTTAGAT-TTACAGAACACAGTAGATCCTAAGGTATCACAGGCTTGTTGATTAACTCTGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75223758 60 + 122973662 TTTAGAT-TTACAGAACACAGTAGATCCTAAGGTATCACAGGCTTGTTGATTAACTGTGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31128065 60 + 172585720 TTTAGAT-TTACAGAACACAGTAGATCCTAAGGTATCGCAGGCTTGTTGATTAACTCTGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30420120 60 - 170955103 TTTAGAT-TTACAGAACACAGTAGATCCTAAGGTATCGCAGGCTTGTTGATTAACTCTGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     674771 60 +   1495729 TTTAGAT-TTACAGAACACAGTAGATCCTAAGGTATCGCAGGCTTGTTGATTAACTCTGTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     776351 60 -    863181 TTTAGAT-TTACAGAACACAGTAGATCCTAAGGTATCGCAGGCTTGTTGATTAACTCTGTT
i cerAty1.NW_012002535v1   I 1126 C 0
s chlSab2.chr17            29914053 60 -  71996105 TTTAGAT-TTACAGAACACAGTAGATCCTAAGGTATCACAGGCTTGTTGATTAACTCTGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     692128 60 -    735854 TTTAGAT-TTACAGAACACAGTAGATCCTAAGGTATCGCAGGCTTGTTGATTAACTCTGTT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     583299 60 -   1829203 TTTAGAT-TTACAGAACACAGTATATCCTAAGGTATCACAGGCTTGTTGATTAACTCTGTT
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           591581 61 +  18854210 TTTAGATCTTATGGAACATAGCAGGTCTGAAGGTATCAGAAACTTGTTCATTAACTCtttt
i otoGar3.GL873550         C 0 I 579
e aotNan1.NW_018496901v1     386756 44601 -    486031 I
e cebCap1.NW_016107755v1    1194537 25008 -   1771730 I
e calJac3.chr4             30759037 29019 + 171630274 I

a score=3677196.000000
s hg38.chr6_GL000254v2_alt  1791016 608 +   4827813 -GGGAAAAATAATACATGGGAAATTTAGTTGTGGAAATTGAATTTTGTTATTTTATTTTTGTCT-----TTGCTTTTCTGTGTGAGTGAAGGAGTATAAGGCAAATTTCTGAGCACACG-----GGGCATGCACTAA-----AGGGGTTTCATTTGGCATTTGGAGCCAGTTTTGTCACACTATAGGAAAACTAAACCGTTATTTAAGAACTT-----CCCTGCCAGCTCTCACGTTGGGGACTGGCTGGTCCATCTAGCCTGGTTGGTTGATTCCAAAAATATGTGTAGGGAGGTAGAGTG-ACTAAACGTGAAGAATGGGGAACTCTGGAAGTGCAGAATTGAAGCCCAGAAGGGAAC-AGAAGCCTCCCTCTACTTCACAGAAGATGACTAGGACATGCTCAT------CCCTGggatagaaaatcca--------ttg--gacttggagactcagtgagttgtattcccgatctcaccactggAGGGAGGTGGGAGAGGCATATGAGTGAGTGTGGAGGGGCTCAGAAGCCCAGCCAGCTAGTGTGCAGGTTGCCCTGCAGATTCTCACCAGGGCTGCTCTGAAGCCCAGAGGGCACCCCAGAGGAGGAAGGGAATGACAAAGCCTGCCTGGGGTCACAGGAA
s panTro5.chr6             30637188 608 + 175400573 -GGGAAAAATAATACATGGGAAATTTAGTTGTGGAAATTGAATTTTGTTATTTTATTTTTGTCT-----TTGCTTTTCTGTGTGAGTGAAGGAGTATAAGGCAAATTTCTGAGCACATG-----GGGCATGCACTAA-----AGGGGTTTCATTTGGCATTTGGAGCCAGTTTTGTCACACTATAGGAAAACTAAACCGTTATTTAAGAACTT-----CCCTGCCAGCTCTCACTTTGGGGAATGGCTGGTCCATCTAGCCTGGTTGGTTGATTCCAAAAATATGTGTAGGGAGGTAGAGTG-ACTAAACGTGAAGAATGGGGAACTCTGGAAGTGCAGAATTGAAGCTCAGAAGGGAAC-AGAAGCCTCCCTCTACTTCACAGACGATGACTAGGAGATGCTCAT------CCCTGggatagaaaatcca--------ttg--gacttggagactcagtgagttgtattcccgatctcaccactggAGGAAGGTGGGAGAGGCATATGAGTGAGTGTGGAGGGGCTCAGAAGCCCAGCCAGCTAGTGTGCAGGTTGCCCTGCAGATTCTCACCAGGGCTGCTCTGAAGCACAGAGGGCACCCCAGAGGAGGAAGGGAATGACAAAGCCTGCCTGGGGTCAAAGGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31061151 608 + 173848474 -GGGAAAAATAATACACGGGAAATTTAGTTGTGGAAATTGAATTTTGTTATTTTATTTTTGTCT-----TTGCTTTTCTGTGTGAGTGAAGGAGTATAAGGCAAATTTCTGAGCACATG-----GGGCATGCACTAA-----AGGGGTTTCATTTGGCATTTGGAGCCAGTTTTGTCACACTATAGGAAAACTAAACCGTTATTTAAGAACTT-----CCCTGCCAGCTCTCACTTTGGGGAATGGCTGGTCCATCTAGCCTGGTTGGTTGATTCCAAAAATATGTGTAGGGAGGTAGAGTG-ACTAAACGTGAAGAATGGGGAACTCTGGAAGTGCAGAATTGAAGCCCAGAAGGGAAC-AGAAGCCTCCCTCTACTTCACAGACGATGACTAGGAGATGCTCAT------CCCTGggatagaaaatcca--------ttg--gacttggagactcagtgagttgtattcccgatctcaccactggAGGAAGGTGGGAGAGGCATATGAGTGAGTGTGGAGGGGCTCAGAAGCCCAGCCAGCTAGTGTGCAGGTTGCCCTGCAGATTCTCACCAGGGCTGCTCTGAAGCACAGAGGGCACCCCAGAGGAGGAAGGGAATGACAAAGCCTGCCTGGGGTCAAAGGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     566493 607 +   2037526 -GGGAAAAATAATACATGGGAAATTTAGTTGTGGAAATTGAATTTTGTTATTTTATTTTTGTCT-----TTGCTTTTCTGTGTGAGTGAAGGAGTATAAGGCAAATTTCTGAGCACATG-----GGGCATGCACTAA-----AGGGGTTTCATTTGGCATTTGGAGCCAGTTTTGTCACACTATAGGAAAACTAAACCGTTATTTAAGAACTT-----CCCTGCCAGCTCTCACGTTGGGGACTGGCTGGTCCATCTAGCCTGGTTGGTTGATTCCAAAAATATGTGTAGGGAGGTAGAGTG-ACTAAACGCGAAGAATGGGGAACTCTGGAAGTGCAGAATTGAAGCCCAGAAGGGAAC-AGAAGCCTCCCTCTACTTCACAGAAGATGACTAGGAGATGCTCAT------CCCTGggatagaaaatcca--------ttg--gacttggagactcagtgagttgtatttccgatctcaccactggAGGGAGGTGGGAGAGGCATATGAGTGAGTGTGGAGGGGCTCAGAAGCCCAGCCAGCTAGTGTGCAGGTTGCCCTGCAGATTCTCACCAGGGCTGCTCTGAAGCCCAGAGGGCACCCCGGAGGAGGAA-GGAATGATAAAGCCTGCCTGGGGTCACAGGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75223818 603 + 122973662 -GGGAAAAATAATACATGGGAAATTTAGTTGTGGAAATTGAGTTTTGTTATTTTATTTTTGTCT-----TTGCTTTTCTGTGTGAGTGAGGGAGTATAAGGCAAATTTCTGAGCACATG-----GGGCATGCATTAA-----AGGGGTTTCATTTGGCATTTGGAGCCAGTTTTGTCACACTATAGGAAAACTAAACCACTATTTAAGAACTT-----CCCTGCCAGCTCTCACGTTGGGGA----CTGGTCCATCTAGCCTGGTTGGTTGATCCCAAAAATATGTGTAGGGAGGTGGAGTG-ACTAAACCTGAGGAAT-GGGAACTCTGGAAGTGCAGAATTGAAGCCCAGAAGGGAAC-AGAAGCCTCCCTCTACTTCACAGAAGATGACTAGGAGATGCTCAT------CCCTGGGATAGAAAATCCA--------TTG--GACTTGGAGACTCAGTGAGTTGTATTCCCTATCTCACCACTggagggaggtgggagaggggtgtgagtgagtgtggaggggCTCAGAAGCCCAGCCAGCTAGTGTGCAGGCTGCCCTGCCGATTCTCACCAGGGCTGTTCTGAAGCCCAGAGGGCACCCCAGAGGAGGAAGGGAAGGACAAAGCTTGCCTGGGGTCACAGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31128125 602 + 172585720 -GGGAAAAGTAATACATGGGAAATTTAGTTGTGGAAATTGAATTTTGTCATTTTGTTTTTGTCT-----TTGGTTTTCTGTGTGAGTGAAGGAGTATCAGGCAAATTTCTGAGTACATG-----GGGCATGCACTAA-----AGGGGTTTCATTTGGCATTTGG----AGTTTTGTCACACTATAGGAAAAATAAACTGTTATTTAAGAACTT-----CCCTGCCAGCTCTCACGTTGGGGACTGGCTGGTCCATCTAGCCTGGTTGATTGATTCCAAAAAAATGTGTAGGGAGGTGCAGTG-ACTAAACGTGAAGAATGGGGAACTCTGGAAGTGCAGAATTGAAGCCCACAAGGAAAC-AGAAGCCTCCCTCTACTTCACAGAAGATGA-GAGGAGATGCTCAT------CCCTGGCATAGAAAATCCA--------TTG--GACTCAGAGACTCAGTGAGTTGTGTTCCGGATCTCACCACTGGAGGGAGGTGGGAGAGGGGTATGAATGAGTGTGGAGGGGCTCAGAAGCCCAGCCAGCTAGTGTGCAGGCTGCCCTGCAGATTCTCACCAGGGCTGTT-TGAAGCCCAGAGGGCACCCCAGAGGAGGAAGGGAAGGACAAAGCCTGCCTGCGGTCCCAGGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30420180 602 - 170955103 -GGGAAAAGTAATACATGGGAAATTTAGTTGTGGAAATTGAATTTTGTCATTTTGTTTTTGTCT-----TTGGTTTTCTGTGTGAGTGAAGGAGTATCAGGCAAATTTCTGAGTACATG-----GGGCATGCACTAA-----AGGGGTTTCATTTGGCATTTGG----AGTTTTGTCACACTATAGGAAAAATAAACTGTTATTTAAGAACTT-----CCCTGCCAGCTCTCACGTTGGGGACTGGCTGGTCCATCTAGCCTGGTTGATTGATTCCAAAAAAATGTGTAGGGAGGTGCAGTG-ACTAAACGTGAAGAATGGGGAACTCTGGAAGTGCAGAATTGAAGCCCACAAGGAAAC-AGAAGCCTCCCTCTACTTCACAGAAGATGA-GAGGAGATGCTCAT------CCCTGGGATAGAAAATCCA--------TTG--GACTCAGAGACTCAGTGAGTTGTGTTCCGGATCTCACCACTGGAGGGAGGTGGGAGAGGGGTATGAATGAGTGTGGAGGGGCTCAGAAGCCCAGCCAGCTAGTGTGCAGGCTGCCCTGCAGATTCTCACCAGGGCTGTT-TGAAGCCCAGAGGGCACCCCAGAGGAGGAAGGGAAGGACAAAGCCTGCCTGCGGTCCCAGGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     674831 602 +   1495729 -GGGAAAAGTAATACATGGGAAATTTAGTTGTGGAAATTGAATTTTGTCATTTTGTTTTTGTCT-----TTGGTTTTCTGTGTGAGTGAAGGAGTATCAGGCAAATTTCTGAGTACATG-----AGGCATGCACTAA-----AGGGGTTTCATTTGGCATTTGG----AGTTTTGTCACACTATAGGAAAAATAAACCGTTATTTAAGAACTT-----CCCTGCCAGCTCTCACGTTGGGGACTGGCTGGTCCATCTAGCCTGGTTGATTGATTCCAAAAAAATGTGTAGGGAGGTGCAGTG-ACTAAACGTGAAGAATGGGGAACTCTGGAAGTGCAGAATTGAAGCCCACAAGGAAAC-AGAAGCCTCCCTCTACTTCACAGAAGATGA-GAGGAGATGCTCAT------CCCTGGGATAGAAAATCCA--------TTG--GACTCAGAGACTCAGTGAGTTGTGTTCCGGATCTCACCACTGGAGGGAGGTGGGAGAGGGGTATGAATGAGTGTGGAGGGGCTCAGAAGCCCAGCCAGCTAGTGTGCAGGCTGCCCTGCAGATTCTCACCAGGGCTGTT-TGAAGCCCAGAGGGCACCCCAGAGGAGGAAGGGAAGGACAAAGCCTGCCTGGGGTCCCAGGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     776411 602 -    863181 -GGGAAAAGTAATACATGGGAAATTTAGTTGTGGAAATTGAATTTTGTCATTTTGTTTTTGTCT-----TTGCTTTTCTGTGTGAGTGAAGGAGTATCAGGCAAATTTCTAAGTACATG-----GGGCATGCACTAA-----AGGGGTTTCATTTGGCATTTGG----AGTTTTGTCACACTATAGGAAAAATAAACCGTTATTTAAGAACTT-----CCCTGCCAGCTCTCACTTTGGGGACTGGCTGGTCCATCTAGCCTGGTTGATTGATTCCAAAAACATGTGTAGGGAGGTGCAGTG-ACTAAACGTGAAGAATGGGGAACTCTGGAAGTGCAGAATTGAAGCCCACAAGGAAAC-AGAAGCCTCCCTCTACTTCACAGAAGATGA-GAGGAGATGCTCAT------CCCTGggatagaaaatcca--------ttg--gactcagagactcagtgagttgtattcccgatctcaccactggAGGGAAGTGGGAGAGGGGTATGAATGAGTGTGGAGGGGCTCAGAAGCCCAGCCAGCTAGTGTGCAGGCTGCCCTGCAGATTCTTACCAGGGCTGTT-TGAAGCCCAGAGGGCACCCCAGAGGAGGAAGGGAAGGACAAAGCCTGCCTGGGGTCACAGGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29914113 606 -  71996105 -GGGAAAAGTAATACATCGGAAATTTAGTTGTGGAGATTGAATTTTGTTACTTTGTTTTTGTCT-----TTGCTTTTCTGTGTGAGTGAAGGAGTATCAGACAAATTTCTGAGTACATG-----GGGCATGCACTAA-----ACCGGTTTCATTTGGCATTTGGAGCCAGTTTTGTCACACTATAGGAAAAATAAACCGTTATTTAAGAACTT-----CCCTGCCAGCTCTCACGTTGGGGACTGGCTGGTCCATCTAACCTGGTTGATTGATTCCAAAAATATGTGTAGGGAGGTGCAGTG-ACTAAACGTGAAGAATTGGGAACTCTGGAAGTGCAGAATTGAAGCCCACAAGGAAAC-AGAAGCCTCCCTCTACTTCACAGAAGATGA-GAGGAGATGCTCAT------CCCTGGGATAGAAAATCCA--------TTG--GACTCAGAGACTCAGTGAGTTGTGTTCCGGATCTCACCACTggagggaggtgggagaggggtatgagtgagtgtggaggggCTCAGAAGCCCAGCCAGCTAGTGTGCAGGCTGCCCTGCAGATTCTCACCAGGGCTGTT-TGAAGCCCAGAGGGCACCCCAGAGGAAGAAGGGAAGGACAAAGCCTGCCTGGGGTCACAGGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     692188 602 -    735854 -GGGAAAAGTAATACATGGGAAATTTAGTTGTGGAAATTGAATTTTGTCATTTTGTTTTTGTCT-----TTGCTTTTCTGTGTGAGTGAAGGAGTATCAGGCAAATTTCTGAGTACATG-----GGGCATGCACTAA-----AGGGGTTTCATTTGGCATTTGG----AGTTTTGTCACACTATAGGAAAAATAAACCGTTATTTAAGAACTT-----CCCTGCCAGCTCTCACTTTGGGGACTGGCTGGTCCATCTAGCCTGGTTGATTGATTCCAAAAATATGTGTAGGGAGGTGCAGTG-ACTAAACGTGAAGAATGGGGAACTCTGGAAGTGCAGAATTGAAGCCCACAAGGAAAC-AGAAGCCTCCCTCTACTTCACAGAAGATGA-GAGGAGATGCTCAT------CCCTGggatagaaaatcca--------ttg--gactcagagactcagtgagttgtattcccgatctcaccactggAGGGAAGTGGGAGAGGGGTATGAATGAGTGTGGAGGGGCTCAGAAGCCCAGCCAGCTAGTGTGCAGGCTGCCCTGCAGATTCTTACCAGGGCTGTT-TGAAGCCCAGAGGGCACCCCAGAGGAGGAAGGGAAGGACAAAGCCTGCCTGGGGTCACAGGAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     583359 607 -   1829203 -GGGAAAAGTAACACATGGGAAATTTAGTTGTGGAAATTGAATTTTGTCATTTTGTTTTTGTCT-----TTGCTTTTCTGTGTAAGTGAAGGAGTATCAGGCAAATTTCTGAGTACAGG-----GGGCATGCACTAA-----AGGGGTTTCAGTTGGCATTTGGAGCCAGTTTTGTCACACTATAGGAAAAATAAACCATTATTTAAGAACTT-----CCCTGCCAGCTCTCACATTGGGGACTAGCTGGTCCATCTAGCCTGGTTGATTGATTCCAAAAATATGTGTAGGGAGGTGCAGTG-ACTAAACGTGAAGAATGGGGAACTCTGGAAGTGCAGAATTGAAGTCCACAAGGAAAC-AGAAGCCTCCCTCTACTTCACAGAAGATAATGAGGAGATGCTTAT------CCCTGGGATAGAAAAGCCA--------TTG--GACTTGGAGACTCAGTGAGTTGTATTCTCGATCTCACCACTGGAGGGTGGTGGGAGAGGGGTATGAGTGAGTGTGGAGGGGCTCAGAAGCCCAGCCAGCTAGTGTGCAGGCTGCCCTGCAGATTCTCACCAGGGCTCTT-TGAAGCCCAGAGGGCACCCCAGAGGAGGAAGGGAAGGACAAAGCCTGCCTGGGGTCACAGGAA
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           592221 589 +  18854210 GGAAAAAAAGAATACATGGAGAATTCAGTTGTGTTAACTGA----TGGGGTTTGGGTTTTGGTTGTTTATTTCTTCGCTGTGTCAGTGAAGGACAGTTAAGCAACCCTCTGCATACAGGGTGCAGTGCATGCACTAACGACTAGGGATTTCACGTGGCATTTGGAGTCAGTTTTGTGGTACTATGGGGAAACTGAACAATTATTTGAGAATATAATACCTCTGCCTGCTCTCCAGTAGGGAACTGGCTGGTCCATTGAGCCTAT----TTGATCCCCAGAAAGTGTGTAGGAATGTGGGGGGAACAAAACTTGAAGAATAGGAAAATGTGGAACCACCCAGGTAAAGACTTGAAGGTTATGAGAAGCCTTGCCTAGATCCACAGAGGAAGA-CTGGACTTGCCCATGGGCACTTCCAGGATACAAAAGCCAGCACGCACTTGGAGACTTGGAGGCACAGTCTGTTGTGTTCCCTCTCT--------------GATGGGTGGGGT-----AGTGAGTG---------------ACCC--------------CAGATTGCCCTGCACCTTCTCACCAGGCCTGTTCTGAAGCCAAGA-GGCAAGCCAGGGAAGGAAGGAAAGGGCAAAGACTGCGTGGGGTCACACAAA
i otoGar3.GL873550         I 579 C 0
e aotNan1.NW_018496901v1     386756 44601 -    486031 I
e cebCap1.NW_016107755v1    1194537 25008 -   1771730 I
e calJac3.chr4             30759037 29019 + 171630274 I

a score=546985.000000
s hg38.chr6_GL000254v2_alt  1791624 61 +   4827813 ---AAGAGGAGAGAGGCAGACTGAAGGAAGCCCAAGACTACAAAGTG-AAAG-AAAATGC--CTTTTA
s panTro5.chr6             30637796 61 + 175400573 ---AAGAGGAGAGAGGCAGACTGAAGAAAGCCCAAGACTACAAAGTG-AAAG-AAAATGC--CTTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31061759 61 + 173848474 ---AAGAGGAGAGAGGCAGACTGAAGGAAGCCCAAGACTACAAAGTG-AAAG-AAAATGC--CTTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     567100 60 +   2037526 ---AAGAGGAGAGAGGCAGACTGAAGGAAGCCCAAGACTACAAAGT--AAAG-AAAATGC--CTTTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75224421 63 + 122973662 ---AAGAGGAGAGAGGCAGACTGAAGGAAGCCCAAGACTACAAAGTG-AAAG-AAAATGCCTCTTTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31128727 63 + 172585720 ---AAGAGGAGAGAGGCAGACTGAAGGAAGCCCAAGACTACAAAGTA-AAAG-AAAATGCCTCTTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30420782 63 - 170955103 ---AAGAGGAGAGAGGCAGACTGAAGGAAGCCCAAGACTACAAAGTA-AAAG-AAAATGCCTCTTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     675433 63 +   1495729 ---AAGAGGAGAGAGGCAGACTGAAGGAAGCCCAAGACTACAAAGTA-AAAG-AAAATGCCTCTTTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     777013 63 -    863181 ---AAGAGGAGAGAGGCAGACTGAAGGAAGCCCAAGACTACAAAGTA-AAAG-AAAATGCCTCTTTTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29914719 63 -  71996105 ---AAGAGGAGAGAGGCAGACTGAAGGAAGCCCAAGACTACAAAGTA-AAAG-AAAATGCCTCTTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     692790 63 -    735854 ---AAGAGGAGAGAGGCAGACTGAAGGAAGCCCAAGACTACAAAGTA-AAAG-AAAATGCCTCTTTTA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     583966 62 -   1829203 ---AAGAGGAGAGAGGCAGACTGAAGGAAGCCCAAGACTACAAAGT--AAAG-AAAATGCCTCTTTTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30788056 64 + 171630274 ---aAGAGGAGAGAGGCAGACTGAAGGAAGCCCGAGACTACAAAGTG-ACAGAAAAATGCCTCTTTTA
i calJac3.chr4             I 29019 C 0
s cebCap1.NW_016107755v1    1219545 64 -   1771730 ---aAGAGGAGACAGGCAGACTGAAGGAAGCCCAAGACTGCAAAGTG-AGAGAAAAATGCCTCTTTTA
i cebCap1.NW_016107755v1   I 25008 C 0
s aotNan1.NW_018496901v1     431357 64 -    486031 ---AAGAGGAGAGAGGCAGACTGAAGGAAGCCCAAGACCACACAGTG-AGAGAAAAATGCCTCTTTCA
i aotNan1.NW_018496901v1   I 44601 C 0
s otoGar3.GL873550           592810 65 +  18854210 ACAGGGCAGGCAGAAGGAAGTAGGAGGAAGGCCCTGACCACAGAGCGCACAG-GGAATGGCATTTT--
i otoGar3.GL873550         C 0 C 0

a score=980372.000000
s hg38.chr6_GL000254v2_alt  1791685 119 +   4827813 GTCACTCAAGACATTGTCAGACACAgactgggagcagtggctcacacctataatattagcactatggtaggctgaggt--gaggccgggagttcaagaccagcctggacaacaatgcaaga
s panTro5.chr6             30637857 119 + 175400573 GTCACTCAAGACATTGTCAGACACAgactgggagcagtggctcacacctataatattagcaatatggtaggctgagat--gaggccgggagttcaagaccagcctggacaacaatgcaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31061820 119 + 173848474 GTCACTCAAGACATTGTCAGACACAgactgggagcagtggctcacacctataatattagcaatatggtaggctgagat--gaggccgggagttcaagaccagcctggacaacaatgcaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     567160 119 +   2037526 GTCACTCAAGACATTGTCAGACACAgactgggagcagtggctcacacctataatattagcactatggtaggctgaggt--gagaccgggagttcaagaccagcctggacaacaatgcaaga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75224484 119 + 122973662 GTCACTCAAGACTTTGTCAGACACAgactgggagcagtggctcacacctataatattagcactatgggaggctgaggt--gaggccgggagttcaagaccagcctggacaacaatgcaaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31128790 119 + 172585720 GTCACTCAAGACTTTGTCAGACACAGACAgggaggagtggctcacacctatgatattagcactatgggagggtgaggt--gaggccgggagttcaagaccagcctggacagcaatgcaaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30420845 119 - 170955103 GTCACTCAAGACTTTGTCAGACACAGACAgggaggagtggctcacacctatgatattagcactatgggagggtgaggt--gaggccgggagttcaagaccagcctggacagcaatgcaaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     675496 119 +   1495729 GTCACTCAAGACTTTGTCAGACACAGACAgggaggagtggctcacacctataatattagcactatgggagggtgaggt--gaggccgggagttcaagaccagcctggacagcaatgcaaga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     777076 119 -    863181 GTCACTCAAGACTTTGTCAGACACAGACAgggaggagtggctcacacctataatattagcactatgggagggtgaggt--gaggccgggagttcaagaccagcctggacagcaatgcaaga
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29914782 119 -  71996105 GTCACTCAAGACTTTGTCAGACACAgactgggaggagtggctcacacctataatattagcactatgggaggctgaggt--gaggccaggagttcaagaccagcctggacaacaatgcaaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     692853 119 -    735854 GTCACTCAAGACTTTGTCAGACACAGACAgggaggagtggctcacacctataatattagcactatgggagggtgaggt--gaggccgggagttcaagaccagcctggacagcaatgcaaga
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     584028 119 -   1829203 GTCACTCAAGACTTTGTAAGACACAgactgggaggaggggctcacacctataatattagctctatgggaggctgaggt--gaggccgggagttcaagaccagcctggacaacaatgcaaga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30788120 104 + 171630274 GTCACTCTAGACTTCATCAGACACAgactgggagcagtggctcacac--------------ctttgggaggctgaactcagaggccaggagttcaacaccagccta---aacaatgcaaga
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1219609 117 -   1771730 G----TCTAGACTTTGTCAGACACAgactgggagcaggggctcacacttacaatattagcactttgggaggctgaactcggaggccgggagttcagcatcagcctaaacaacaatgcaaga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     431421 121 -    486031 GTCACTCTAGACATTGTCAGACACAgactgggagcagtggctcacacctataatattagcactttgggaggctgaactcggaggccgggagttcaacaccagcctgaacaacaatgcaaga
i aotNan1.NW_018496901v1   C 0 C 0
e otoGar3.GL873550           592875   0 +  18854210 C

a score=1358198.000000
s hg38.chr6_GL000254v2_alt  1791804 162 +   4827813 ccctatctctacaagaaataAATTAATAAAAGACTTCTTCGGACATGACTAGAACCCAAGAGGTGGGTACCTGGTAGAGTTATATGGGAAGAATGGAGCAATGGGTTTG-----GCAGTTGGGGTGGGGAAACAGGGAGGATGGGAATG-AAAAAAACTCTTGAGGGT
s panTro5.chr6             30637976 162 + 175400573 ccctatctctaaaagaaataAATTAATAAAAGACTTCTTCAGACATGACTAGAACCCAAGAGGTGGGTACCTGGTAGAGTTATATGGGAAGAATGGAGCAATGGGTTTG-----GCAGTTGGGGTGGGGAAACAGGGAGGAAGGGAATG-AAAAAAACTCTTGAGGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31061939 162 + 173848474 ccctatctctacaagaaataAATTAATAAAAGACTTCTTCAGACATGACTAGAACCCAAGAGGTGGGTACCTGGTAGAGTTATATGGGAAGAATGGAGCAATGGGTTTG-----GCAGTTGGGGTGGGGAAACAGGGAGGAAGGGAATG-AAAAAAACTCTTGAGGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     567279 162 +   2037526 ccctatctctacaagaaataAATTAATAAAAGACTTCTTCGGACATGACTAGAACCCAAGAGGTGGGTACCTGGTAGAGTTATATGGGAAGAATGGAGCAATGGGTTTG-----GCAGTTGGGGTGGGGAAACAGGGAGGAAGGGAATG-AAAAAAACTCTTGAGGGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75224603 162 + 122973662 ccctatctctacaagaaataAATTAATAAAAGACTTTTTCGGACATGGCTAGAACCCAAGAGGTGGGTACCTGGTAGAGTTATACGAGAAGAATGGAGCAATGGGTTTG-----GCAATTGGGGTGGGGAAACAGGGAGGAAGGGAATG-AAAAAAACTCTTGAGGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31128909 163 + 172585720 ccctatctctacaagaaataAATTAATAAAAGACTTTGTCGAACATGACTAGAACCCAAGAGGTGGGCGCCTGGTAGAGTCACGTGGGAAGAATGGAGCGATGGGTTTG-----GCAGTTGGGGTGGGGAAACAGGGAGGAAGGGAATGAAAAAAAACTCTTGAGGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30420964 163 - 170955103 ccctatctctacaagaaataAATTAATAAAAGACTTTGTCGAACATGACTAGAACCCAAGAGGTGGGCACCTGGTAGAGTCACGTGGGAAGAATGGAGCGATGGGTTTG-----GCAGTTGGGGTGGGGAAACAGGGAGGAAGGGAATGAAAAAAAACTCTTGAGGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     675615 163 +   1495729 ccctatctctacaagaaataAATTAATAAAATACTTTGTCGAACATGACTAGAACCCAAGAGGTGGGCACCTGGTAGAGTCACGTGGGAAGAATGGAGCGATGGGTTTG-----GCAGTTGGGGTGGGGAAACAGGGAGGAAGGGAATGAAAAAAAACTCTTGAGGGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     777195 163 -    863181 ccctatctctacaagaaataAATTAATAAAAGACTTTGTCGAACATGACTAGAACCCAAGAGGTGGGCACCTGGTAGAGTCACGTGGGAAGAATGGAGCGATGGGTTTG-----GCAGTTGGGGTGGGGAAACAGGGAGGAAGGGAATGAAAAAAAACTCTTGAGGGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29914901 163 -  71996105 ccctatctctatgagaaataAATTAATAAAAGACTTTGTTGAACATGACTAGAACCCAAGAGGTGGGCACCTGGAAGAGTCATATAGGAAGAATGGAGCGATGGGTTTG-----GCAGTTGGGGTGGGGAAACAGGGAGGAAGGGAATGAAAAAAAACTCTTGAGGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     692972 163 -    735854 ctctatctctacaagaaataAATTAATAAAAGACTTTGTCGAACATGACTAGAACCCAAGAGGTGGGCACCTGGTAGAGTCACGTGGGAAGAATGGAGCGATGGGTTTG-----GCAGTTGGGGTGGGGAAACAGGGAGGAAGGGAATGAAAAAAAACTCTTGAGGGT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     584147 147 -   1829203 ccctatctgtaccagaaataAATTAATAAAAGACTTTGTTGAACATGACTAGAACCCAAGAGGTGGGCACCTGGTAGAGTCATATAGGAAGAACGG--------------------AGTTGGGGTGGGGAAACAGGGAGGAAGGAAATG-AAAAAAACTCTTGAGGGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30788224 159 + 171630274 ccctaactgtacaagaaataaatcagtaaaagacttagtcaggcatCATTAGAACCCAAGAGGTGCGTACCTGGGAGAGTTATATGAAAAGAAAGGAGCAATGGGTTTG-----GTGGTTGGGGTTGGGAAACAGGTAGGAAGGGAATG-AATAAAAAACTGCAG---
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1219726 156 -   1771730 ccctctctgtacaagaaataa---aataaaagacttagtcgggcatCACTAGAACCCAAGAGGTGGGTACCTGGGAGAGTTATATGAAAAGAATGGAGCAATGGGTTTG-----GTGGTTGAGGTGGGGAAACAGGTAGGAAGGGTATG-AAAAAAACACTGGAG---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     431542 162 -    486031 ccctatctgtacaaGTAAGAAATTAACAAAAGACTTAGTCGGATATCACTAGAACCCAAGAGGTGGGTACCTGGGAGAGTTGTGTGAAAAGCATGGAGCAATGCGTTTG-----GCGGTTGGGGTGGGGAAACAGGTAGGAAGGGAATG-AAAAAAACACTCGAGGGT
i aotNan1.NW_018496901v1   C 0 I 1
s otoGar3.GL873550           592875 146 +  18854210 CCCTAACTC--------------------AAGACTTAGCCATGCCCGACCAGAGCCTAAGATGTGAGTGCCTGGTAGAAGATGATGGGAAGAACATCACCAGGGGCATGTGCTAGTGGCTGGGATGAGAAGACAGGAAGGAAGAGGATG-ACAAACA-TCTAGGAGGT
i otoGar3.GL873550         C 0 C 0

a score=227406.000000
s hg38.chr6_GL000254v2_alt  1791966 30 +   4827813 AGATGATGGTGCCAGTCTGAGAATCAAGCA
s panTro5.chr6             30638138 30 + 175400573 AGATGATGGTGCCAGTCTGAGAATCAAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31062101 30 + 173848474 AGATGATGGTGCCAGTCTGAGAATCAAGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     567441 30 +   2037526 TGATGATGGTGCCAGTCTGAGAATCAAGCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75224765 30 + 122973662 AGATGATGGTGCCAGTCTGAGAACCAAGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31129072 30 + 172585720 AGATGACGGTGCCAGTCTGAGAATCAAGCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30421127 30 - 170955103 AGATGACGGTGCCAGTCTGAGAATCAAGCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     675778 30 +   1495729 AGATGACGGTGCCAGTCTGAGAATCAAGCG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     777358 30 -    863181 AGATGACGGTGCCAGTCTGAGAATCAAGCG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29915064 30 -  71996105 AGATGATGGTGCCAGTCTGAGAATCAAGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     693135 30 -    735854 AGATGACGGTGCCAGTCTGAGAATCAAGCG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     584294 30 -   1829203 AGATGATGGTGCCAGTCTGAGAATCAAGCG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30788383 23 + 171630274 -------AGTGCCAGTCTGAGAATCAGGTT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1219882 23 -   1771730 -------GGTGCCAGTCTGAGAATCAGGTG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           593021 30 +  18854210 GAGGGATCACTTCAGTCTAAGAATCAGGTG
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018496901v1     431704  1 -    486031 I

a score=824443.000000
s hg38.chr6_GL000254v2_alt  1791996 89 +   4827813 CCAGTTCCATTCTACTGTGCATCTAGTCACGTTGGCATAGACTTCCAGGCAGGAGGAGGAG--CAAGCGGTGGGATCAGCTACATGTGGGC
s panTro5.chr6             30638168 89 + 175400573 CCAGTTCCATTCTACTGTACATCTAGTCATGTTGGCATAGACTTCCAGGCAGGAGGAGGAG--CAAACGGTGGGATCAGCTACATGTGGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31062131 89 + 173848474 CCAGTTCCATTCTACTGTACATCTAGTCATGTTGGCATAGACTTCCAGGCAGGAGGAGGAG--CAAACGGTGGGATCAGCTACATGTGGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     567471 89 +   2037526 CCAGTTCCATTCTACTGTGTATCTAGTCATGTTGGCATAGACTTCCAGGCAGGAGGAGGAG--CAAGCGGTGGGATCAGCTACATGTGGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75224795 89 + 122973662 CCAGTTCCATTCTACTATGCGTCTAGTCACATTGGTGTAGGCGTTCAGGCAGGAGGAGGAG--CGAGCTGTGGGATCAGCTACATGTGGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31129102 89 + 172585720 CCAGTTCCATTCTACTGTGCGTCTAGTCAGATTGGCGTAGACGTCCAGGCAGGAGGAGGAG--CAAGCTGTGGGATCAGCTACATGTGGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30421157 89 - 170955103 CCAGTTCCATTCTACTGTGCGTCTAGTCAGATTGGCGTAGACGTCCAGGCAGGAGGAGGAG--CAAGCTGTGGGATCAGCTACATGTGGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     675808 89 +   1495729 CCAGTTCCATTCTACTGTGCGTCTAGTCAGATTGGCGTAGACGTCCAGGCAGGAGGAGGAG--CAAGGTGTGGGATCAGCTACATGTGGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     777388 89 -    863181 CCAGTTCCATTCTACTGTGCGTCTAGTCAGATTGGCGTAGACGTCCAGGCAGGAGGAGGAG--CAAGCTGTGGGATCAGCTACATGTGGGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29915094 89 -  71996105 CCAGTTCCATTCTACTGTGCGTCTAGTCAGATTGGCGTAGACGTCCAGGCAGGAGGAGGAG--CAAGCTGTGGGATCAGCTACGTGTGGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     693165 89 -    735854 CCAGTTCCATTCTACTGTGTGTCTAGTCAGATTGGCGTAGACGTCCAGGCAGGAGGAGGAG--CAAGGTGTGGGATCAGCTACATGTGGGC
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     584324 89 -   1829203 CCAGTTCCATTCTATTGTGCATCTAGTCACATTGGTGTAGACGTCCAGGCAGGAGAAGGAG--CAAGCTGTGGGATCAGCTACGTGCGGGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30788406 89 + 171630274 CCAGTTCCACTCTACTGTGTGTCTAGTCACATTGGTGTAGATGTCCAGGCAGGAGAAGGGG--CAAGCTGTGGGATCAGCCACATGTGGGC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1219905 89 -   1771730 CCAGTTCCATTCTACTGTGTGTCTAGTCACATCGGTGCAGATGTCCAGGCAGGAGAAGCGG--CAAGCTGTGGGATCAGCCACATGTGGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     431705 89 -    486031 CCAGTTCCATTCTACTGTGTGTCTAGTCACATTGGAGTAGATGTCCAGGCAGGAGAAGGGG--CAAGCTGTGGGATCAGCCACATGTGGGC
i aotNan1.NW_018496901v1   I 1 I 80
s otoGar3.GL873550           593051 90 +  18854210 ACAGTTCTATTTCATTAGGTTTCTAAGCACACTGTC-TGGGTGTGGGAGCAGGTGGAGGAGTCCCAGCTGTGAGACCAGCCACATGTGAGC
i otoGar3.GL873550         C 0 C 0

a score=4244139.000000
s hg38.chr6_GL000254v2_alt  1792085 514 +   4827813 TTCCAAAGGTAATCCCAGGTGCCACCTCTCCTCCATACTTACTAGGAATCCCAGGCCCTTCCCTGAAGTGACACCATCCTGCATTCTTT--GTACCTCTCTTTCCACTTCTTCTCACAGCTTTTCCCT----CCCTCCTCCATTCTCCTGGCCAGGACCCACACTCACCCCACCTAACCTCTCTCTTTTGATCAGTCCCATAGTTCAGAAAGGAACAGAAATGCCAGCTGAA-----------TAAAAATTTATTTCGTGCTCTCTGGGCATGTATTTGAGAACAataacattgtttccggtctcaatgcactttcaccacatctgattttcagctatgtggggaaggccatctatctgatcaacccatcacccagtgaaggaaactgaggcccagagccctgaggatgcttgcccaaatcac--------------CCTGCCCTTCAGCTAAATCACCCAGAACAGGATCTTGC-----AAGGGCCCTAAGAGTCAGAGAAGACAGCAGCCCCTCGTGTTGGATTCTCCTGCCTGCCCAGGAAACTGGG
s panTro5.chr6             30638257 514 + 175400573 TTCCAAAGGTAATCCCAGGTGCCACCTCTCCTCCATACTTACTAGGAATCCCAGGCCCTTCCCTGAAGTGACACCATCCTGCATTCTTT--GTACCTCTCTTTCCACTTCTTCTCACAGCCTTTCCCT----CCCTCCTCCATTCTCCTGGCCAGGACCCACACTCACCTCACCTAACCTCTCTCTTTTGATCAGTCCCATAGTTCAGAAAGGAACAGAAATGCCAGCTGAA-----------TAAAAATTTATTTCGTGCTCTCTGGGCATGTATTTGAGAACAATAACATTGTTTCTGGTCTCAATGCACTTTCACCACATCTGATTTTCAGCTATGTGGGGAAGGCCATCTATCTGATCAACCCATCACCAAGTGAAGGAAACTGAGGCCCAGAGCCCTGAGGATGCTTGCCCAAATCAC--------------CCTGCCCTTCAGCTAAATCACCCAGAACAGGATCTTGC-----AAGGGCCCTAAGAGTCAGAGAAGACCGCAGCCCCTTGTGTTGGATTCTCCTGCCTGCCCAGGAAACTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31062220 514 + 173848474 TTCCAAAGGTAATCCCAGGTGCCACCTCTCCTCCATACTTACTAGGAATCCCAGGCCCTTCCCTGAAGTGACACCATCCTGCATTCTTT--GTACCTCTCTTTCCACTTCTTCTCACAGCCTTTCCCT----CCCTCCTCCATTCTCCTGGCCAGGACCCACACTCACCTCACCTAACCTCTCTCTTTTGATCAGTCCCATAGTTCAGAAAGGAACAGAAATGCCAGCTGAA-----------TAAAAATTTATTTCGTGCTCTCTGGGCATGTATTTGAGAACAataacattgtttctggtctcaatgcactttccccacatctgattttcagctatgtggggaaggccatctatctgatcaacccatcaccaagtgaaggaaactgaggcccagagccctgaggatgcttgcccaaatcac--------------CCTGCCCTTCAGCTAAATCACCCAGAACAGGATCTTGC-----AAGGGCCCTAAGAGTCAGAGAAGACCGCAGCCCCTTGTGTTGGATTCTCCTGCCTGCCCAGGAAACTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     567560 512 +   2037526 -TCCAAAGGTAATCCCAGGTGCCACCTCTCCTCCATACTTACTAGGAATCCCAGGCTCTTCCCTGAAGTGACACCGTCCTGCATTCTTT--GTACCTCTCTTTCCACTTCTTCTCACAGCCTTTCCCT-----CCTCCTCCATTCTCCTGGCCAGGACCCACACTCACCCCACCTAACCTCTCTCTTTTGATCAGTCCCATAGTTCAGAAAGGAACAGAAATGCCAGCTGAG-----------TAAAAATTTATTTCGTGCTCTCTGGGCATGTATTTGAGAACAataacattgtttccggtctcaatgcactttcaccacatctgattttcagctatgtcgggaaggccatctatctgatcaacccatcaccaagtgaaggaaactgaggcccagagccctgaggatgcttgcccaaatcac--------------CCTGCCCTTCAGCTAAATCAGCCAGAACAGGATCTTGC-----AAGGGCCCTAAGAGTCAGAGAAGACCGCAGCCCCTCGTGTTGGATTATCCTGCCTGCCCAGGAAACTGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75224884 511 + 122973662 TTCCAAAGGTAATCCCAGGTGCCACCTCTCCTCCATACTTACTAGGAATCCCAGGGCCTTCCCTGAAGTGACACCATCCTGCATTCTTT--GTACCTCTCATTCCA---CTTCTCACAGCCTTTCCCT----CCCTCCTCCACTCTCCTGGCCAGGACCCACACTCACCCCACCTAACCTCTCTCTTTTGATCAGTCCCATAGTTCAGAAAGGGACAGAAATGCCAGCTGAA-----------TAAATATTGATTTAGTGCTCTCTGGGCATGTATTTGAGAACAATAACATTGTTTCTGGTCTcaatgcattttcaccacatctgattttcagctgcgtgaggaaggccatctatatgatcaacccatcacccagtgaaggaaactgaggcccagagccctgaggatgcttgcccaaatcac--------------ccagcCCTTCAGCTAAATCACCCAGAACAGGATCTTGC-----AAGGGCCCTAAGACTCAGAGAAGACCAAAGCCCCTTGTGTTGGATTCTCCTGCCTGCCCAGGAAACTGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31129191 514 + 172585720 TTCCAAAGGTAATCCCAGGTGCCACCTCTCCTCTATACTTACTAGGAATCCCAGGCCCTTCCCTGAAGTGACACCATCCTGCATCCTTT--GTACCTCTCTTTCCACTTCTTCTCACAGCCTTTCCCT----CCTTCCTACATTCTCCTGGCCAGGACCCACACTCACCCCACTTCACCTCTCTCTTTTGATCAGTCCCATAGTTCAGAAAGGAACAGAAATGCCTGCTGAA-----------TAAAAATTTATTTAGTGCTCTCTGGGCATGTATTTGAGAACAataacattgtttccagtctcaatgcactttcaccacatctgatttttagctatgtgaggaaggccatctatatgatcaacccatcacccagtgaaggaaactgaggcccagagccctgaggatgcttgcccaaatcac--------------CCTGCCCTTCAGCTAAATCACCCAGAACAGGACCTTGC-----AAGGGCCCTAAGAGTCAGAGAAGACCGCAGCCCCTCGTGTTGGATTCTGCTGCCTGCCCAGGAAACTGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30421246 514 - 170955103 TTCCAAAGGTAATCCCAGGTGCCACCTCTCCTCTATACTTACTAGGAATCCCAGGCCCTTCCCTGAAGTGACACCATCCTGCATCCTTT--GTACCTCTCTTTCCACTTCTTCTCACAGCCTTTCCCT----CCTTCCTACATTCTCCTGGCCAGGACCCACACTCACCCCACTTCACCTCTCTCTTTTGATCAGTCCCATAGTTCAGAAAGGAACAGAAATGCCTGCTGAA-----------TAAAAATTTATTTAGTGCTCTCTGGGCATGTATTTGAGAACAataacattgtttccagtctcaatgcactttcaccacatctgatttttagctatgtgaggaaggccatctatatgatcaacccatcacccagtgaaggaaactgaggcccagagccctgaggatgcttgcccaaatcac--------------CCTGCCCTTCAGCTAAATCACCCAGAACAGGACCTTGC-----AAGGGCCCTAAGAGTCAGAGAAGACCGCAGCCCCTCGTGTTGGATTCTGCTGCCTGCCCAGGAAACTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     675897 514 +   1495729 TTCCAAAGGTAATCCCAGGTGCCACCTCTCCTCTATACTTACTAGGAATCCCAGGCCCTTCCCTGAAGTGACACCATCCTGCATCCTTT--GTACTTCTCTTTCCACTTCTTCTCACAGCCTTTCCCT----CCTTCCTACATTCTCCTGGCCAGGACCCACACTCACCCCACTTCACCTCTCTCTTTTGATCAGTCCCATAGTTCAGAAAGGAACAGAAATGCCTGCTGAA-----------TAAAAATGTATTTAGTGCTCTCTGGGCATGTATTTGAGAACAataacattgtttccagtctcaatgcactttcaccacatctgatttttagctatgtgaggaaggccatctatatgatcaacccatcacccagtgaaggaaactgaggcccagagccctgaggatgcttgcccaaatcac--------------CCTGCCCTTCAGCTAAATCACCCAGAACAGGACCTTGC-----AAGGGCCCTAAGAGTCAGAGAAGACCGCAGCCCCTCGTGTTGGATTCTGCTGCCTGCCCAGGAAACTGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     777477 514 -    863181 TTCCAAAGGTAATCCCAGGTGCCACCTCTCCTCTATACTTACTAGGAATCCCAGGCCCTTCCCTGAAGTGACACCATCCTGCATCCTTT--GTACCTCTCTTTCCACTTCTTCTCACAGCCTTTCCCT----CCTTCCTACATTCTCCTGGCCAGGACCCACACTCACCCCACTTCACCTCTCTCTTTTGATCAGTCCCATAGTTCAGAAAGGAACAGAAATGCCTGCTGAA-----------TAAAAATTTATTTAGTGCTCTCTGGGCATGTATTTGAGAACAataacattgtttccagtctcaatgcactttcaccacatctgatttttagctatgtgaggaaagccatctatatgatcaacccatcacccagtgaaggaaactgaggcccagagccctgaggatgcttgcctaaatcac--------------CCTGCCCTTCAGCTAAATCACCCAGAACAGGACCTTGC-----AAGGGCCCTAAGAGTCAGAGAAGACCGCAGCCCCTCGTGTTGGATTCTGCTGCCTGCCCAGGAAACTGGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29915183 519 -  71996105 TTCCAAAGGTAATCCCAGGTGCCACCTCTCCTCCATACTTACTAGGAATCCCAGGCCCTTCCCTAAAGTGACACCATCCTGCATCCTTT--GTACCTCTCTTTCCACTTCTTATCACAGCCTTTCCTT----CCTTCCTACATTCTCCTGGCCAGAACCCACACTTACCCCACCTCACATCTCTTTTTTGATCAGTCCCATAGTTCAGAAAGGAACAGAAATGCCTGCTGAA-----------TAAAAATTTATTTAGTGCTCTCTGGGCATGTATTTGAGAACAataacattgtttccagtctcactgcactttcaccacatctgatttttagctatgtgaggaaggccatctatatgatcaacccattacccagtgaaggaaactgaggcccagagccctgaggatgcttgcccaaatcac--------------CCTGCCCTTCAGCTAAATCACCCAGAACAGGACCTTGCAAGGGAAGGGCCCTAAGAGTCAGAGAAGACCGCAGTCCCTCGTGTTGGATTCTGCTGCCTGCCCAGGAAACTGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     693254 514 -    735854 TTCCAAAGGTAATCCCAGGTGCCACCTCTCCTCTATACTTACTAGGAATCCCAGGCCCTTCCCTGAAGTGACACCATCCTGCATCCTTT--GTACCTCTCTTTCCACTTCTTCTCACAGCCTTTCCCT----CCTTCCTACATTCTCCTGGCCAGGACCCACACTCACCCCACTTCACCTCTCTCTTTTGATCAGTCCCATAGTTCAGAAAGGAACAGAAATGCCTGCTGAA-----------TAAAAATTTATTTAGTGCTCTCTGGGCATGTATTTGAGAACAataacattgtttccagtctcaatgcactttcaccacatctgatttttagctatgtgaggaaggccatctatatgatcaacctatcacccagtgaaggaaactgaggcccagagccctgaggatgcttgcccaaatcac--------------CCTGCCCTTCAGCTAAATCACCCAGAACAGGACCTTGC-----AAGGGCCCTAAGAGTCAGAGAAGACCGCAGCCCCTCGTGTTGGATTCTGCTGCCTGCCCAGGAAACTGGG
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     584413 514 -   1829203 TTCCAAAGGTAATCCCAGGTGCCACCTCTCCTCCATACTTACTAGGAATCCCAGGCCCTTCCCTGAAGTGACACCATCCTGCATCCTTT--GTACCTCTCTTTCCACTTCTTCTCACAGCCTTTCCCT----CCCTCCTCCATTCTCCTGGCCAGGACCCACACTTACCCCACCTCACATCTCTCTTTTGATCAGTCCCATAGTTCAGAAAGGAACAGAAATGCCTGCTGAA-----------TAAAAATTTATTTAGTGCTCTCTGGGCATGTATTTGAGAACAataacattgtttccagtctcaatgcacttttaccacatctgattttcagctatgtgaggaaggccatctatataatcaacctatcacccagtgaaggaaactgaggcccagagccctgaggatgcttgcccaaatcac--------------CCTGCCCTTCAGCTAAATCACCCAGAACAGGCCCTTGC-----AAGGGCCCTAAGAGTCAGAGAAGACCGCAGCCCCTCGTGTTGGATTCTGCTGCCTACCCAGAAAACTGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30788495 528 + 171630274 TTCCAAAGCTAATCCCAGATGCCACCTCTCCTCCATACTTATGAGGAATCTCGGGTTCTTAGCTAAACTGACACCATCCTGCAACCTTT--GTAGCACTCCTTCCACTTCTTCTCACGGCCTTTCCCCACC-CCCGCCTCCACTCTACTGGCCAGGACCCACACTCACCCCACCTCACCTCTCTCTTTTGATTAGTCCCACAGTTCAGAAAGGAACAGAAATGCCAGCTGAGGTCAGGTGTTTTAAGAATTTATCCAGTGCTCTCTGGGCATGTAATTAAAGACAATAACATTGTTTCCTGTCTCAATGCACTTTCCCCACATCTGACTTTCAGGAATGTGAAGAAGGCCATCCATATGATCATGCCATCACCCAGGCAAGGAAACTATGGCCCCGAGCCCTGAGGATGCCTGCCCAAATCAC--------------CCTGCCCTTCAGCCAAATCACTCAGAACAGGATCTTGG-----AAGGGCCCTATGAATCAGAGAAGACCGCAGCCCCTCGTGTTGTATTCTGCTGCCTGCTGGGGAAACTGAG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1219994 541 -   1771730 TTCCAAAGCCAATCCCAGGTGCCACCTCTCCTCCATGCTTATGAGGAATCTCGGGCTCTTCCCTGAAGTGACACCATCCTGCATCCTTT--GTAGCCCT-CTTTCACTTCTTCTCATGGCCTTTCCCCACC-CCCTCCTCCACTCTCCTGGCCAGGACCCACACTCACCCCACCTCACCTCTCTCTTTTTATCAGTCCCACAGTTCAGAAAGGAACAGAAATGCCAGCTGAGGTCAGGTGTTTTAAGAATTTATTCAGTGCTCTCTGAGCATGTATTTGAAGACAATAACATTGTTTCTGGTCTCAATGCACTTTCCCCACATCTGATTTTCAGCTATCTGAGGAAGGCCATCCATATAATCATCCCATCACCCAGGCAAGGAAATTATGGCCCAGAGCCCTGAGGATGCCTGCCCAAATCACCCTGCCCAAATCATCCTGCCCTTCAGTCAAATCACTCAGAATAGGATCTTGC-----AAGGGCCCTAAGAATCAGAGAAGACCGCAGCCCCTCGTGTTGTATTCTGCTGCCTGCTGGGGAAACTGTG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           593141 480 +  18854210 TTCCAAAGGGAAGCCTAGGTACCACCTCTCCACCACACTTACTGGGAATC-CAGGTTCTCCCCTAGGCTGATACC--TCTGCCTCCCCCCATTCCCCCTCCCTCCCCTTCTTCCCACAGTCATTCTCTGCCTCCCGCCTCCATTGTCCTGGCCAGGACCATCATGCACCCTGCCTCTCCCCTCACTTTCAGTAAGTCTTACAGCTCAGAAAGGAACAGAAATACAGGTTGAGATCAGGTGTTTTAAAAATGTATTCAGTGCTTTCTGGGGGTGTATTGGAGGAGAACAACACTGTCCCTAATGTCAAAGCACATGCCCAATACCTAATTTTAAGCTATGTGAGAAAAGccat-------------------cctagtgaaggaaattgaggcccaaaacgttgagcatgcttacccaag--at----------------------tcagctaAACTTCCTGGAACAAGGGGTTGC--------------------CAGATACAACCCCAGCTCC---TGTTATATGCAACTGCCTGCT-GGGAAACTGGA
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018496901v1     431794  80 -    486031 I

a score=1240002.000000
s hg38.chr6_GL000254v2_alt  1792599 151 +   4827813 TGGGAACCATTCAGATTCTTCCTGCATGAAAAGGGTGACCTGTGTCCTTG---G---GGATCC---TCCAGTGGCCCTAGTTGCTCCTGCT--GGGGATGA---CCTCAACTCCTGAATCCAACCCTGTAAAATAAGAAGAAATTCAGACATTGCAAGGCATGAA
s panTro5.chr6             30638771 151 + 175400573 TGGGAACCATTCAGATTCTTCCTGCATGAAAATGGTGACCTGTGTCCTTG---G---GGATCC---TCCAGTGGCCCTAGTTGCTCCTGCT--GGGGATGA---CCTCAACTCCCGAATCCAACCCTGTAAAATAAGAAGAAATTCAGACATTGCAAGGCATGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31062734 151 + 173848474 TGGGAACCATTCAGATTCTTCCTGCATGAAAATGGTGACCTGTGTCCTTG---G---GGATCC---TCCAGTGGCCCTAGTTGCTCCTGCT--GGGGATGA---CCTCAACTCCCGAATCCAACCCTGTAAAATAAGAAGAAATTCAGACATTGCAAGGCATGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     568072 151 +   2037526 TGGGAACCATTCAGATTCTTCCTGCGTGAAAATGGTGACCTGTGTCCTTG---G---GGATCC---TCCAGTGGCCCTAGTTGCTCCTGCG--GGGGATGA---CCTCAACTCCCGAATCCAACCCTGTAAAATAAGAAGAAATTCAGACACTGCAAGGCATGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75225395 151 + 122973662 TGGGAACCATTCAGATTCTTCCTGCATGAAAAGGGTGACCTGTGTCCTTG---G---GGATCT---TCCAGTGGCCCCAGTTATTCCTGCT--GGGGATGA---CCTCAACCCCCGAATCCAACCCggtaaaataagaagaaattcagacattgcaaagcatgaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31129705 151 + 172585720 TGGGAACCATTCAGATTCTTCCTGCATGAGAAGGGTGACCTGTGCCTTCG---G---GGATCC---TCCAGTGGCCCCAGTTGTTCCTGCT--GGGGATGA---CCTCGACTCCCGAATCCAACCCTGTAAAATGAGAAGAAATTCAGATATTGTAAGGCAAGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30421760 151 - 170955103 TGGGAACCATTCAGATTCTTCCTGCATGAGAAGGGTGACCTGTGCCTTCG---G---GGATCC---TCCAGTGGCCCCAGTTGTTCCTGCT--GGGGATGA---CCTCGACTCCCGAATCCAACCCTGTAAAATGAGAAGAAATTCAGATATTGTAAGGCAAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     676411 151 +   1495729 TGGGAACCATTCAGATTCTTCCTGCATGAGAAGGGTGACCTGTGCCTTCG---G---GGATCC---TCCAGTGGCCCCAGTTGTTCCTGCT--GGGGATGA---CCTCGACTCCCGAATCCAACCCTGTAAAATGAGAAGAAATTCAGATATTGTAAGGCATGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     777991 151 -    863181 TGGGAACCATTCAGATTCTTCCTGCATGAGAAGGGTGACCTGTGCCTTCG---G---GGATCC---TCCAGAGGCCCTAGTTGTTCCTGCT--GGGGATGA---CCTTGACTCCCGAATCCAACCCTGTAAAATGAGAAGAAATTCAGACATTGTAAGGCATGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29915702 151 -  71996105 TGGGAACCATTCAGATTCTTCCTGTATGAGAAGGGTGACCTGTGCCTTCG---G---GGATCC---TCCAGTGGCCCCAGTTGTTCCTGCT--GGGGATGA---CCTCGACTCCCAAATCCAACCCTGTAAAATGAGAAGAAATTCAGACATTGCAAGGCATGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     693768 151 -    735854 TGGGAGCCATTCAGATTCTTCCTGCATGAGAAGGGTGACCTGTGCCTTCG---G---GGATCC---TCCAGTGGCCCTAGTTGTTCCTGCT--GGGGATGA---CCTCGACTCCCGAATCCAACCCTGTAAAATGAGAAGAAATTCAGACATTGTAAGGCATGGA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     584927 151 -   1829203 TGGGAACCATTCAGATTCTTCCTGCATGAGAAGGGTGACTTGTGCCCTCG---G---GGATCC---TCCAGTGGCCCCAGTTGTTCCTCCT--GGGGATGA---CCTCGACTCCCGAATCCAACCCTGTAAAATGAGAAGAAATTCAGACATTGCAAGGCATGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30789023 149 + 171630274 TGGCAATGATTCAGGCTCTTCCTGCATCAGAAGGGCCACCTGCATCCTTG---G---GGGTCC---TCCAGTGGCCACGGTTGTTCCTGCT--GAGGGTGA---CCTCGACTCCCGAATCCAACCCTGTAAAATAGAAAGAAATTCAGATATTGCAAAGCCTG--
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1220535 147 -   1771730 TGGGAACGATACAAACTCTTCCTGCATCAGAAAGGCCACCTGAGTCCTTG---G---GGGTCC---TTCAGTGGCCGCAGTTGTTCCTGCT--GAAGGTGA---CCTCAACTCCTGAATCCAACCCTGTAAAAT----AAAAATTCAGATATTGCAAGCCCTGAA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           593621 156 +  18854210 TGTGAATGATTCAAACTCTTCCTGCCTCA-CAGGGCCACTCATGCCCCTGGGTG---GGATCC---TTCTGTGGCTCCCACTGTTCCTTCC--ATGTCTGACTTCCTCCATTCTCAAATCCATCTCTATAAATCAGGAAGAAAATCACACCTTACAGGGCATGAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58753913 158 -  94987271 TGGGGAAGATTTAGTCCCTCTGTTCACCAGGAGGGC-AGCTGTGCCCTTG---GCTTGGATCCTCTTCTTGGAGTGCCAGTGGTTCCTGCTCATGGGGTAA---TCTCGGGTTGATAATCCTTCCCTGTAAATGAGGAAGAAATATCAATATTGCAAACCATGAA
i mm10.chr17               N 0 I 2653
e aotNan1.NW_018496901v1     431794  80 -    486031 I

a score=583219.000000
s hg38.chr6_GL000254v2_alt  1792750 79 +   4827813 ---------------AAATTTTCTCCCAATAGCAAAGGTGAAGGATGTACT-CGGAGAGGAGGGAACATACCAAGAAGAGAAGGAAGGAATATAT
s panTro5.chr6             30638922 79 + 175400573 ---------------AAATTTTCTCCCAATAGCAAAGTTGAAGGATGTACT-CGGAGAGGAGGGAACATACCAAGAAGAGAAGGAAGGAATATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31062885 79 + 173848474 ---------------AAATTTTCTCCCAATAGCAAAGTTGAAGGATGTACT-CGGAGAGGAGGGAACATACCAAGAAGAGAAGGAAGGAATATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     568223 79 +   2037526 ---------------AAATTTTCTCCCAATAGCAAAGTTGAAGGATGTACT-CGGAGAGGAGGGAACATACCAAGAAGAGAAGGAAGGAATATAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75225546 79 + 122973662 ---------------aaattttcttccaatagcaaagttgaaggatgtact-cagagaggagggaacataccaagaagagaaggaaggaatatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31129856 79 + 172585720 ---------------ACATTTTCTCCCAATAGCAAAGTTGAAGGATGTACT-CGGAGAGGAGGGAACATAGCAAGAAGAGAAGGAAGGAATATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30421911 79 - 170955103 ---------------ACATTTTCTCCCAATAGCAAAGTTGAAGGATGTACT-CGGAGAGGAGGGAACATAGCAAGAAGAGAAGGAAGGAATATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     676562 79 +   1495729 ---------------ACATTTTCTCCCAATAGCAAAGTTGAAGGATGTACT-CGGAGAGGAGGGAACATAGCAAGAAGAGAAGGAAGGAATATAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     778142 79 -    863181 ---------------ACATTTTCTCCCAATAGCAAAGTTGAAGGATGTACT-CGGAGAGGAGGGAACATAGCAAGAAGAGAAGGAAGGAATATAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29915853 78 -  71996105 ---------------ACATTTTCT-CCAGTAGCAAAGTTGAAGGATGTACT-CAGAGAGGAGGGAACATAGCAAGAAGAGAAGGAAGGAATATAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     693919 79 -    735854 ---------------ACATTTTCTCCCAATAGCAAAGTTGAAGGATGTACT-CAGAGAGGAGGGAACATAGCAAGAAGAGAAGGAAGGAATATAT
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     585078 79 -   1829203 ---------------ACATTTTCTCCCAATAGCAAAGTTGAAGGATGTACT-CAGAGAGGAGGGAACATAGCAAGAAGAGAAGGAAGGAATATAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30789172 78 + 171630274 ----------------AGTTTTCTCCCACTATCAAAGTTAAGGGATGTACT-CAAAGAAAAGGGAACATACCAAGCAGAGGAGGAAGGAATACAC
i calJac3.chr4             C 0 I 1
s cebCap1.NW_016107755v1    1220682 79 -   1771730 ---------------AAGTTTTCTCCCAATACGAAAGTTGAGGGATGTACT-CAAAGAAAAGGGAACATACCAACAAGAGGAGAAAGGAATACAC
i cebCap1.NW_016107755v1   C 0 I 41
s otoGar3.GL873550           593777 61 +  18854210 CGTTTATTAAcctatgagctctttttcaa----aaagttaaagaatattctccagagatgaggga------------------------------
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58754071 2653 -  94987271 I
e aotNan1.NW_018496901v1     431794 80 -    486031 I

a score=123597.000000
s hg38.chr6_GL000254v2_alt  1792829 23 +   4827813 ATTGaaaagaatacaaaacaaaa
s panTro5.chr6             30639001 23 + 175400573 ATTAAAAAGAATACAAAACAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31062964 23 + 173848474 ATTAAAAAGAATACAAAACAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     568302 23 +   2037526 ATTAAAAAGAATACAAAACAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75225625 23 + 122973662 attaaaaagaatacaaaacaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31129935 22 + 172585720 ATT-AAAAGAATACAAAACAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30421990 22 - 170955103 ATT-AAAAGAATACAAAACAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     676641 22 +   1495729 ATT-AAAAGAATACAAAACAAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     778221 22 -    863181 ATT-AAAAGAATACAAAACAAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29915931 22 -  71996105 ATT-AAAAGAATACAAAACAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     693998 22 -    735854 ATT-AAAAGAATACAAAACAAAA
i manLeu1.NW_012107142v1   C 0 C 0
s colAng1.NW_012115577v1     585157 22 -   1829203 ATT-AAAAGAATACAAAACAAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30789251 20 + 171630274 ---aaagacaaaaacaaacaaac
i calJac3.chr4             I 1 I 17
s otoGar3.GL873550           593838 11 +  18854210 ------------ataaaacaaac
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58754071 2653 -  94987271 I
e aotNan1.NW_018496901v1     431794 80 -    486031 I
e cebCap1.NW_016107755v1    1220761 41 -   1771730 I

a score=3799432.000000
s hg38.chr6_GL000254v2_alt  1792852 502 +   4827813 ataaacagaccaagacGTGGGATGTATAGAATC-AGGCATCAACCCATGAAAAGGT--------GAAAAGGTGAAAAGgc---------------------------aacagga-------ccaga---------------------------------------------------------------------------------aaggaagagggtcgcctgggtgggtggacagcacagcagaggggacgccatctccaagaagatgaccttgacaagagccaccataagtttaaaggtatggagaagacatttactcaactaagggacagttggtgaattcatttgttaaggt------tcatggaaagtaagaaaatgaaaacgccgggcaattatcaattctctgaaaacatcaacatgtatggaaagaaaaactaagagagtttaccatgtggctcaggtctgagtagcattcacgt-aagtcagtaattttaactctggctctcaatgcactcaaaatctccacctgcctacatgaggaggat-gaaaatgtgtgtgctgtggaaggTACTATGGACTGAAGGGATTTTGAAAAGTCAATACTTAATATCTAAAATGGAAATG-TT
s panTro5.chr6             30639024 502 + 175400573 ATAAACAGACCAAGACGTGGGATGTATAGAATC-AGGCATCAACCCATGAAAAGGT--------GAAAAGGCGAAAAGGC---------------------------AACAGGA-------CCAGA---------------------------------------------------------------------------------AAAGAAGAGGGTCGCCTTGGTGGGTGGACAGCACAGCAGAGgggaagccatctccaagaagatgaccttgacaagagccaccataagtttaaaggtatggagaagacatttactcaactaagggacagttggtgaattcatttgttaaggt------tcatggaaagtaagaaaatgaaaatgccgggcaattatcaattctctgaaaacatcaacatgtatggaaagaaaaactaagagagtttaacatgtggctcaggtctgagtagcagtcacat-aagtcagtaattttaactctggctctcaatgcactcaaaatctccacctgcctacacgaggaggat-gaaaatgtgtgtgctggggaaagtACTATGGACTGAAGGGATTTTGAAAAGTCAATACTTAATATCTAAAATGGAAATA-TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31062987 502 + 173848474 ATAAACAGACCAAGACGTGGGATGTATAGAATC-AGGCATCAACCCATGAAAAGGT--------GAAAAGGCGAAAAGGC---------------------------AACAGGA-------CCAGA---------------------------------------------------------------------------------AAAGAAGAGGGTCGCCTTGGTGGGTGGACAGCACAGCAGAGgggaagccatctccaagaagatgaccttgacaagagccaccataagtttaaaggtatggagaagacatttactcaactaagggacagttggtgaattcatttgttaaggt------tcatggaaagtaagaaaatgaaaatgctgggcaattatcaattctctgaaaacatcaacatgtatggaaagaaaaactaagagagtttaacatgtggctcaggtctgagtagcagtcacat-aagtcagtaattttaactctggctctcaatgcactcaaaatttccacctgcctacacgaggaggat-gaaaatgtgtgtgctggggaaggtACTATGGACTGAAGGGATTTTGAAAAGTCAATACTTAATATCTAAAATGGAAATA-TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     568325 510 +   2037526 ATAAACAGACCAAGACGTGGGATGTATAGAATC-AGGCATCAACCCATgaaaaggtgaaaaggcgaaaaggcgaaaaggc---------------------------AACAGGA-------CCAGA---------------------------------------------------------------------------------AAAGAAGAGGGTCGCCTGGGTGGGTGGACAGCACAGCAGAGgggaagccatctccaagaagattaccttgacaagagccaacataagtttaaaggtatggaaaagacatttactcaactaagggacagttggtgaattcatttgttaaggt------tcatggaaagtaagaaaatgaaaatgccgggcaattatcaattctctgaaaacatcaacatgtatggaaagaaaaactaagagagtttaacatgtggctcaggtctgagtagcagtcacat-aagtcagtaattttaattctcgctctcaatgcactcaaaatctccacctgcctacatgaggaggat-gaaaatgtgtgtgctggggaaggtACTATGGACTGAAGGGATTTTGAAAAGTCAATACTTAATATCTAAAATGGAAATA-TT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75225648 489 + 122973662 ataaacggaccaagacgtgggatatatagaatc-aggcatcaacccatgaaaaggt----------------gaaagggc---------------------------aacagga-------ccaga---------------------------------------------------------------------------------aagcaagagggttgcctgggcgggtta-----atggcagagaggaagccgtctccaagaagatgaccttgacaacagccaacataagtttaaaggtatcgagaagacatttactcaactgagggacagttggtgaattcatttattaaggt------tcatggaaagtaagaaaatgaaaatgccaggcaattatcaattctctgaaaacatcaacatgtatggaaagaaaaactaacagagtttaacatgtggctcaggtctgagtagcattcacat-aagtcagtaattttaactctggctctcaatgcactcaaaatctccacctgcctacacgaggaggat-gaaaatgtgtgtgCTGGGTAAGGTACTATGGACTGATGGGATTTTGAAAAATCAATACCTAATAACTAAAATGGAAACA-TT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31129957 488 + 172585720 ATAAGCAGACCAAGACGCGGAATGTATAGAATC-AGGCATCAACCCATGGAAAGGT----------------GAAAGGgc---------------------------aacagga-------ccaga---------------------------------------------------------------------------------aaggaagagggtcacctgagtgggtgg-----acggcagaggggaagccatctccaagaagatgaccttgacaacagccaccataagtgtaaagatgttgagaagacatttactcatctaagggacagttggtgaattcatttattaaggt------tcatggaaagtcagaaaatgaaaatgccaggcaattatcaattctctgaaaacatcaacatgtatggaaagaaaaactaaaagagtttgacatgtggctcagttctgagtagcattcacat-aagtcaataattttaactctggctctcagtgcactcaaaatctccacctgcctacacgaggaggat-gaaaatgtctgtgctggggaaggtactatgga-cgaagggatattgaaaagtcaatacataatatctaaaatgggaaca-tt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30422012 488 - 170955103 ATAAGCAGACCAAGACGCGGAATGTATAGAATC-AGGCATCAACCCATGGAAAGGT----------------GAAAGGgc---------------------------aacagga-------ccaga---------------------------------------------------------------------------------aaggaagagggtcacctgagtgggtgg-----acggcagaggggaagccatctccaagaagatgaccttgacaacagccaccataagtgtaaaggtgttgagaagacatttactcatctaagggacagttggtgaattcatttattaaggt------tcatggaaagtcagaaaatgaaaatgccaggcaattatcaattctctgaaaacatcaacatgtatggaaagaaaaactaaaagagtttaacatgtggctcagttctgagtagcattcacat-aagtcaataattttaactctggctctcagtgcactcaaaatctccacctgcctacacgaggaggat-gaaaatgtctgtgctggggaaggtactatgga-cgaagggatattgaaaagtcaatacataatatctaaaatgggaaca-tt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     676663 488 +   1495729 ATAAGCAGACCAAGACGCGGAATGTATAGAATC-AGGCATCAACCCATGGAAAGGT----------------GAAAGGgc---------------------------aacagga-------ccaga---------------------------------------------------------------------------------aaggaagagggtcacctgagtgggtgg-----acggcagaggggaagccatctccaagaagatgaccttgacaacagccaccataagtgtaaagatgttgagaagacatttactcatctaagggacagttggtgaattcatttattaaggt------tcatggaaagtcagaaaatgaaaatgccaggcaattatcaattctctgaaaacatcaacatgtatggaaagaaaaactaaaagagtttaacatgtggctcagttctgagtagcattcacat-aagtcaataattttaactctggctctcagtgcactcaaaatctctacctgcctacacgaggaggat-gaaaatgtgtgtgctggggaaggtactatgga-cgaagggatattgaaaagtcaatacataatatctaaaatgggaaca-tt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     778243 488 -    863181 ATAAGCAGACCAAGACGCGGAATGTATAGAATC-AGGCATCAACCCATGGAAAGGT----------------GAAAGGgc---------------------------aacagga-------ccaga---------------------------------------------------------------------------------aaggaagagggtcacctgagtgggtgg-----acggcagaggggaagccatctccaagaagatgaccttgacaacagccaccataagtgtaaaggtgttgagaagacatttactcatctaagggacagttggtgaattcatttattaaggt------tcatggaaagtcagaaaatgaaaatgccaggcaattatcaattctctgaaaacatcaacatgtatggaaagaaaaactaaaagagtttaacatgtggctcagttctgagtagcattcacat-aagtcaataattttaactctggctctcagtgcactcaaaatctctacctgcctacacgaggaggat-aaaaacgtgtgtgctggggaaggtactatgga-cgaagggatattgaaaagtcaatacataatatctaaaatgggaacc-tt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29915953 489 -  71996105 ATAAGCAGACTAAGACGCGGAATGTATAGAATC-AGGCATCAACCCATGGAAAGGT----------------GAAAGAGC---------------------------AACAGGA-------CCAGA---------------------------------------------------------------------------------AAGGAAGAGGGTCACCTGGGTGGGTGA-----ATGGCAGAGgggaagccatctccaagaagatgaccttgacaacagccaccataagtttaaacgtattgagaagacatttactcatctaagggacagttggtgaattcatttattaaggt------tcatggaaagtcagaaaatgaaaatgccaggcaattatcaattctctgaaaacatcaacaagtatagaaagaaagactaagagagtttaacatgtggctcaggtctgagtagcattcacat-aagtcagtaattttaactttggctttcaatgcactcaaaatctccacctgcctacacgaggaggat-gaaaatgtctgtgctggggaaggtactatggattgaagggatattgaaaagtcaatacataatatctaaaattgaaaca-tt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012107142v1     694020 488 -    735854 ATAAGCAGACCAAGACGCGGAATGTATAGAATC-AGGCATCAACCCATGGAAAGGT----------------GAAAGGgc---------------------------aacagga-------ccaga---------------------------------------------------------------------------------aaggaagagggtcacctgagtgggtgg-----acggcagaggggaagccatctccaagaagatgaccttgacaacagccaccataagtgtaaaggtgttgagaagacatttactcatctaagggacagttggtgaattcatttattaaggt------tcatggaaagtcagaaaatgaaaatgccaggcaattatcaattctctgaaaacatcaacatgtatggaaagaaaaactaaaagagtttaacatgtggctcagttctgagtagcattcacat-aagtcaataattttaactctggctctcagtgcactcaaaatctctacctgcctacacgaggaggat-aaaaacgtgtgtgctggggaaggtactatgga-cgaagggatattgaaaagtcaatacataatatctaaaatgggaaca-tt
i manLeu1.NW_012107142v1   C 0 N 0
s colAng1.NW_012115577v1     585179 571 -   1829203 ATAAGCAGACCGAGACACGGAATGTATAGAAGC-AGGCATCAACCCGTGGAAAGGT----------------GAAAGGGC---------------------------AACAGGA-------CCAGAAAGGAAGACGGTCgtgctcgcttcggcagcacatatactaaaattggaacgatacagagaagattagcatggcccctgcgcaaggaagacGGTCACCTGGGTAGGTGG-----ATGGCAGAGgggaagccatctccaagaagatgaccttgacaacagctaccataagtgtaaaggtattgagaaggcatttactcatctaagggacagctggtgaattcatttattaagat------tcgtggaaagtcagaaaatgaaaatgccaggcaattatcaattctctgaaaacatcaacatgtatagaaagaaaaactaagagagtttaacatgtggctcaggtctgagtagcactcacat-aagtcagtaattttaactttggctctcaatgcactcaaaatctccacctgcctacacgaggaggataaaaaatgtgtgtgctggggtaggtACTATGGATTGAAGGGATATTGAAAAGTCAATACATAATATCTAAAATGGAAACA-TT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30789288 486 + 171630274 AAAACCAGACCAAGACGCAGGATGTATAGAATC-AGGCATCAAGCCAGGAAAAGGT----------------GAAAGGAC---------------------------AACAGGA-------CCAGA---------------------------------------------------------------------------------AAGGAACAGGGTCCTCTGggtgggtgg-----aaggcagaaggaaagccatctccaaagagacgaacttgacaacagccaccatgagtttaaaggtattgagaagacctttactcaactaagggacagttggtgaattcattcattaaggt------tcatggaaagtaagaaaatgaaaataccaggtaattatcaaatctctgaaaacatcaacatggatggaaagaaaaactaggagagtttaacatgtggccccggtctgagtagcattcacatcaaatctgtaattttaactctggctctcaatgcactcaaaatctccacctacctacactaggaggat-gAAAATGTGAGTGCTGCGGAAGCTACTATGGACTGAAGGGATACTGAAAATTCAA----TAATATCTCAAATGAAAAAAGT-
i calJac3.chr4             I 17 C 0
s cebCap1.NW_016107755v1    1220802 489 -   1771730 aaaaccagaccaaGACGCAGGATGTATAGAATC-TGGCATCAAGCCATGAAAAGGT----------------GAAAGGGC---------------------------AACAGGA-------CCAGA---------------------------------------------------------------------------------AAGGAACAGGGTCACCTGGGTGGGTGG-----AAGGCAGAAGGGAAGCCATCTCCAAAGAGGTGACCTTGACAACAGCCACCATGAGTTTCAAGGTATTGAAAAGACCTTTACTCAACTAAGGGACAGTTGGTGAATTCATTTATTAAGGT------TCATGGAAAGTAAGAAAATGAAAATACCAGGTAATTATCAAATCTCTGAAAACGTCAACATGGATGGAAAGAAAAACTAGGAGAGTTTAACAAGTGGCCCTGGTCTGAGTACCATTCACACCAAATCTGTAATTTTAACTCCGGCTCTCAGTGCACTCAAAATCTCCACCTACCTACACTAGGAGGAT-GAACATGTGCGTCCTGGGGAAGCTACTATGGACTGAAGGGATACTGAAAATTCAATAACTAATATCTAAAATGAAAAAA-T-
i cebCap1.NW_016107755v1   I 41 C 0
s otoGar3.GL873550           593849 501 +  18854210 -----aagatcaagacacaaggtctgcggaatctgggcatcaatccacgatggggt----------------gaagggactccccacagatgtgcaagagtgaagttaacagggcagtgtcccaga---------------------------------------------------------------------------------aagaaactagggaacttaggctggtgg-----gaagt-gagaggagac--tttaccaagaaatgaccttgacaataaccatcatcaatatgaaggtgttaagaagggattta-----ctacgaaagagttgggggatacatttattaaagtagaagatcacacaaagcaagaaaatgaaagcctcaggcaattattaaatccctgaaaa---------------aaaatcaaaataagggagtttaacatgtgattcacatttgagtaacattcccgt-aagtcagtaattttatcttggactctccttccactcaaaatcatcatgtacctacactggatggtt-gaaaatgtgtgtgatgggaaaggtagtgtgggccaaagagatcctgaaaagcccacaca-aatgtctcaaatggagaca-tt
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58754071 2653 -  94987271 I
e aotNan1.NW_018496901v1     431794  80 -    486031 I

a score=4106314.000000
s hg38.chr6_GL000254v2_alt  1793354 509 +   4827813 TGAAGTGGCATAAATGTATATTATCAAGA-GACATAAAGATAAAGAACAACATATGAAGTAAAAGGCTTCTATGTGGTTGTTTGCCAGGAAGCTGGTGGCTAGGAAGGATTGAGAGGGAGTAGAGGGGAGACCATGTTTTGTAACAGGGGAAATGAAAGGGAAGCAGGTAGCACCTGGAGCCTGCCTCATGTAGAGAACAGGGTTCCACGCAGTGGTCCAGGATCTCAGGGAC--TTACTGTGGCTGAGGCCACCTGCCCCCAGGACAAGCCCTTGGCACTGAGTCTACTGAAATGTGGGCAGGGAGAAGAGGAGGCCTTCGGACCTTTTACCTGAGCAGCCTGGTTTACTCTAGGCTCT-TCTTGTTTCCTGTCCAGAGATTAATGCAACAAACTGTCTCCAAATTCATCCAAGGGAGTGGAGTTCCTTCCCCTACTCCCGATCC---CCCTCAACACCATCCTTTCTGGAAGTGTTATTCTGAACATGTTCTCGGATTT----------GTTTTTATCAGTGGA
s panTro5.chr6             30639526 510 + 175400573 TGAAGTGGCATAAATGTATATTATCAAGA-GACATAAAGATAAAGAACAACATATGAAGTAAAAGGCTTCTATGTGGTTGTTTGCCAGGAAGCTGGTGGCTAGGAAGGATTGAGAGGGAGTAGAGGGGAGACCATGTTTTAGAACAGGGGAAATGAAAGGGAAGCAGGTAGCACCTGGAGCCTGCCTCATGCAGAGAACAGGGTTCCACGCAGTGGTCCAGGATCTCAGGGAC--TTACTGTGGCTGAGGCCACCTGCCCCCAGGACAAGCCCTTGGCACTGAGTCTACTGAAATGTGGGCAGGGAGAAGAGGAGGCCTTCGGACCTTTTACCTGAGCAGCCTGGCTTACTCTAGGCTCTGTCTTGTTTCCTGTCCAGAGATTAATGTAACAAACTGTCTCCAAATTAATCCAAGGGAGTGGAGTTCCTTCCCCTACTCCCAATCC---CCCTCAACACCATCCTTTCTGGAAGTGTTATTCTGAACATGTTCTCGGATTT----------GTTTTTATCAGTGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31063489 510 + 173848474 TGAAGTGGCATAAATGTATATTATCAAGA-GACATAAAGATAAAGAACAACATATGAAGTAAAAGGCTTCTATGTGGTTGTTTGCCAGGAAGCTGGTGGCTAGGAAGGATTGAGAGGGAGTAGAGGGGAGACCATGTTTTAGAACAGGGGAAATGAAAGGGAAGCAGGTAGCACCTGGAGCCTGCCTCATGCAGAGAACAGGGTTCCACGCAGTGGTCCAGGATCTCAGGGAC--TTACTGTGGCTGAGGCCACCTGCCCCCAGGACAAGCCCTTGGCACTAAGTCTACTGAAATGTGGGCAGGGAGAAGAGGAGGCCTTCGGACCTTTTACCTGAGCAGCCTGGCTTACTCTAGGCTCTGTCTTGTTTCCTGTCCAGAGATTAATGTAACAAACTGTCTCCAAATTAATCCAAGGGAGTGGAGTTCCTTCCCCTACTCCCAATCC---CCCTCAACACCATCCTTTCTGGAAGTGTTATTCTGAACATGTTCTCGGATTT----------GTTTTTATCAGTGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     568835 509 +   2037526 TGAAGTGGCATAAATGTATATTATCAAGA-GACATAAAGATAAAGAACAACATATGAAGTAAAAGGCTTCTATGTGGTTGTTTGCCAGGAAGCTGCTGGCTAGGAAGGATTGAGAGGGAGCAGAGGGGAGACCATGTTTTGGAACAGGGGAAATGAAAGGGAAGCAGGTAGCACCTGGAGCCTGCCTCATGCAGAGAACAGGGTTCCACGCAGTGGTCCAGGATCTCAGGGAC--TTACTGTGGCTGAGGCCACCTGCCCCCAGGACAAGCCCTTGGCACTGAGTCTACTGAAATGTGGGCAGGGAGAAGAGGAGGCCTTCGGACCTTTGACCTGAGCAGCCTGGCTTACTCTAGACTCTGTCTTGGCTCCTGTCCAGAGATTAATGTAACAAACTGTCTCCAAATTAATCCAAGGGAGTGGAGTTCCTTCCCCTACTCCCGAT-C---CCCTCAACACCATCCTTTCTGGAAGTGTTATTCTGAACATGTTCTCCGATTT----------GTTTTTATCAGTGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75226137 511 + 122973662 TGAAGTGGCATAAATGTATATTATCAAGAGGATATAAAGATAAAGAACAACATATGAACTAAAAGGCTTCTATGTGGTTGCTTGCCAGGAAGCTGGTGGCTAGGAAGGATTGAGAGGGAGAAGAGGGGAGACCATGTTTTGGAACAGGGGAAATGAAAGGGAAGCAGGCAGCACCTGGAGCCTGCCTCATGCAGAGAACAGGGTTCCACGCAGTGGTCCAGGATCTCAGGGAC--TTACTGTGGCTGAGGCCACCTGCCCCCAGGACAAGGCCTTTGCACTGAGTCTACTGAAATGTGAGGAGGGAGAAGAGGAGGCCTTCGGACATTTGACCTGAGCAGCCTGGCTTACTCTAGGCTCTGTCTTGGCTCCTGTCCAGAGATTAATGTAACAAACTGTCTCCAAATACATCCAAGGGAGTGGAGTTCCTTCCCCTACTCCCGATCC---CCCTCAACACCATCCTTTCTGGAAGTGTTGTTCTGAGCATGTTCTCGGATTT----------GTTTTTATCAGTGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31130445 508 + 172585720 tgaagtggcataaatgtatattatcaaga-aacataaagataaaGAACAACATATGAATGAAAAGGCTTCTGTGTGGTTGTTTGCCAGGAAGCTGGTGGCTAGGAAGGATTGAGAGGGAGTAGAGGGGAGACCATGTTTTGGAACAGGGGAAATTAAAGGGAAGCAGGTAGCACCTGGAGCCTGCCTCATGCGGAGAACAGGGTTCCACACAGCGGTCCAGGATCTCAGGAAC--TTACTGTGGCTGAGGCCACCTGCCCCCAGGACAAGCCCCTGGCACTGAGTCTACTGAAATGTGGGGAGGGACAAGAGGAGGCCTTCGAACCTTTGACTTGAGCAGACTGGCTTACTCTAGG--CTGTCTTGGCTCCTGTCCAGAGATTAATGTAACAGATTGTCTCCAAATTCATCCAAGGGAGTGGAGTTCCTTCCCCTATTCCCTATCC---CCCTCAACACCACCCTTTCTGGAAGTGTTATTCTGAACATGTTCTCGGATTT----------GTTTTTATCAGTGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30422500 508 - 170955103 tgaagtggcataaatgtatattatcaaga-aacataaagataaaGAACAACATATGAATGAAAAGGCTTCTGTGTGGTTGTTTGCCAGGAAGCTGGTGGCTAGGAAGGATTGAGAGGGAGTAGAGGGGAGACCATGTTTTGGAACAGGGGAAATGAAAGGGAAGCAGGTAGCACCTGGAGCCTGCCTCATGCGGAGAACAGGGTTCCACACAGCGGTCCAGGATCTCAGGAAC--TTACTGTGGCTGAGGCCACCTGCCCCCAGGACAAGCCCCTGGCACTGAGTCTACTGAAATGTGGGGAGGGACAAGAGGAGGCCTTCGAACCTTTGACTTGAGCAGACTGGCTTACTCTAGG--CTGTCTTGGCTCCTGTCCAGAGATTAATGTAACAGATTGTCTCCAAATTCATCCAAGGGAGTGGAGTTCCTTCCCCTATTCCCTATCC---CCCTCAACACCACCCTTTCTGGAAGTGTTATTCTGAACATGTTCTCGGATTT----------GTTTTTATCAGTGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     677151 508 +   1495729 tgaagtggcataaatgtatattatcaaga-aacataaagataaagaacaacatatgaattaaaaggcttctgtgtggttgtttgccaggaagctggtggctaggaaggattgagagggagtagaggggagACCATGTTTTGGAACAGGGGAAATGAAAGGGAAGCAGGTAGCAGCTGGAGCCCGCCTCATGCGGAGAACAGGGTTCCACACAGCGGTCCAGGATCTCAGGAAC--TTACTGTGGCTGAGGCCACCTGCCCCCAGGACAAGCCCCTGGCACTGAGTCTACTGAAATGTGGGGAGGGACAAGCGGAGGCCTTCGAACCTTTGACTTGAGCAGACTGGCTTACTCTAGG--CTGTCTTGGCTCCTGTCCAGAGATTAATGTAACAGATTGTCTCCAAATTCATCCAAGGGAGTGGAGTTCCTTCCCCTATTCCCTATCC---CCCTCAACACCACCCTTTCTGGAAGTGTTATTCTGAACATGTTCTGGGATTT----------GTTTTTATCAGTGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     778731 511 -    863181 tgaagtggcataaatgtatattatcaaga-aacataaagataaaGAACAACATATGAACGAAAAGGCTTCTGTGTGGTTGTTTGCCAGGAAGCTGGTGGCTAGGAAGGATTGAGAGGGAGTAGAGGGGAGACCATGTTTTGGAACAGGGGAAATGAAAGGGAAGCAGGTAGCACCTGGAGCCCACCTCATGCGGAGAACAGGGTTCCACACAGTGGTCCAGGATCTCAGGAAC--TTACTGTGGCTGAGGCCACCTGCCCCCAGGACAAGCCCCTGGCACTGAGTCTACTGAAATGTGGGGAGGGACAAGAGGAGGCCTTCGAACCTTTGACTTGAGCAGCCTGGCTTACTCTAGG--CTGTCTTGGCTCCTGTCCAGAGATTAATGTAACAGATTGTCTCCAAATTCATCCAAGGGAGTGGAGTTCCTTCCCCTATT-------C---CGCTCAACACCACCCTTTCTGGAAGTGTTATTCTGAACATGTTCTGAGATTTGTTTTTATCAGTTTTTATCAGTGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29916442 508 -  71996105 tgaagtggcataaatgtatattatcaaaa-gacataaagataaagaacaacatatgaacaaaaaggcttctgtgtggttgtttgccaggaagctggtggctaggaaggattgagagggagtagaggggagaccatgttttggaataggGGAAATTAAAGGGAAGCAGGTAGCACCTGGAGCCTGCCTCATGCAGAGAACAGGGTTCCACGCAGTGGTCCAGGATCTCAGGGAC--TTACTGTGGCTGAGGCCACCTGCCCCCAGGACAAGCCCTTGGCACTGAGTCTACTGAAATGTAAGGAGGGACAAGAGGAGGCCTTCGAACCTTTGACCTGAGCAGCCTGGCTTACTCTAGG--CTGTCTTGGCTTCTGTCCAGAGATTAATGTAACAAATTGTCTCCAAATTCATCCAAGGGAGTGGAGTTCCTTCCCCTACTCCCTATCC---CCCTCAACATCACCCTTTCTGGAAGTGTTATTCTGAACATGTTCTCGGATTT----------GTTTTTATCAGTGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1          0 510 +    779361 TGAAGTGGCATAAATGTATATTATCAAGA-AACATAAAGATAAAGAACAACATATGAACAAAAAGGCTTCTGTGTGGTTGCTTGCCAGGAAGCTGGTGGCTAGGAAGGATTGAGAGGGAGTAGAGGGGAGACCATGTTTTGGAACAGGGGAAATGAAAGGGAAGCAGGTAGCACCTTGACCCTGCCTCATGCGGAGAACAGGGTTCCACGCAGTGGTCCAGGATCTCAGGGGC--TTACTGTGGCTGAGGCCACCTGCCTCCAGGACAAGTCCTTGGCATTGAGTCTACTGAAACGTGGGGAGGGACAAGAGGAGGTCTTCGGACCTTTGACCCGAGCAGCCTGGCTTACTCTAGACTCTGTCTTGGCTTCTGTCCAGAGATTAATGTAATAAATTGTCTCCAAATTCACCCAAGGGAGCAGAGTTCCTTCCCCTACTCCTTATCC---CCTTCAACACCATCATTTCTGGAAGTGTTATTCTGAACATGTTCTCAGATTT----------GTTTCTATCAGTGGA
i manLeu1.NW_012106264v1   N 0 C 0
s colAng1.NW_012115577v1     585750 510 -   1829203 TGAAGTGGCATAAATGTATATTATCAAAA-GACATAAAGATAAAGAACAACATATGGACTAAAAGGCTTCTGTGTGGTTGTTTGTCAGGAAGCTGGTGGCTAGGGAGGATTGAGAGGGAGTAGAGGGGAGACCATGTTTTGGAACAGGGGAAATGAAAGGGAAGCAGGTAGCACCCTGACCCTGCCTCATGCGGAGAACAGGGTTCCACACAGTGGTCCAGGATCTCAGGGAC--TTACTGTGGCTGAGGCCACCTGCCCCCAGGACAAGCCCTTGGCACTGAGTCTACTGAAATGTGGGGAGGGATAAGAGGAGGCCTTCGGACCTTTGACCTGAGCAGCCTGGCTTACTCTAGACTCTGTCTTGGCTCCTGTCCACAGATTAATGTAATAAATTGTCTCCAAATACACCCAAGGGAGCGGAGTTCCTTCCCCTACTCCCTGTCC---CCCTCAACACCACCCTTTCTGGAAGTGCTATTCTGAACCTGTTCTGGGATTT----------GTTTTTATCAGTGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30789774 509 + 171630274 TGAAGTAGCGTCAAAGTATATTATCAAGA-GACAGAACAATAAAGAACAAAATATGAACTAAAAGGATTCTATGTGGTTGTTTGCCTGGAAGCTGGTGGCTA-GAAGGATTCAGAGGCAGTAGAGGGGGAACCATGTTTTGCAACAGGAGAAATGAAAGGGAAGCAGGTAGCACCTGGAACCTGCCTCATGCAGAGAACAGGGTTCCAAGCCATGCTCCAGGATCTCGGGGAC--TTACTGTGGCTGAGGTCACCTGTCCTCAGAACAAGCCCCTGGCACTGAGTCTACTGAAATGTGGGGAGGGACAAGAGGAGGCCTTTGGACCTTTGACCTGAGCAGCCTGGCTTCCTCTAGGCTCTGTCTTGGCTCCTGTACAGACATTAGTGTAACAGATTGTCTCTTGGTTGGTCCAAGGGAGTGGAGCTCCTTCTACTATGCCCTAATC---CCCTCAACACCATCCTTTCTGGAAGTGTTATTCTGAACATGTTATCCAATTT----------GTTTTTATCGGTGGA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1221291 506 -   1771730 TGAAGTAGCATAAAAGTATATTATCAAGA-GACAGAATGATAAAGAACAAAATATGAACTCAAAGGCTTCTATGTGCTTGTTTGTCAGGAAGCTGGTGGCTA-GAAGGATTCAGAGGCAGTAGAGGGGGAGCCATGTTTTGCAACAGGAGAAATGAAAGGGAAGCAGGTAGCACCTGGAACCTGCCTCATGCAGAGAACAGGGTTCCAAGCAGTGCTCCAGGATCTCAGAAAC--TTACTGTGGCTGAGGCCACCTGCCCCCAAAACAAGCCCCTGGCACTGAGTCTACTGAAATGTGGGGAGGGACAAGAGGAGGCCTTCAGACTTTTGGCCTGGGCAGCCTGGCTTTCTCTAGGCTCTGTGTTGGCTCCTGTCCAGAGATTAGTGTAACAGGTTGTCTCTAAGTTCGTCCAAGGGAGTGGAGCTCCTTCCCCTATGCCCTAATC---CCCTCAACACCACCCTTTGTGGAAGCGTTATTCTGAACATGTTATCCACTTT----------G---TTATCCATGGT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           594350 465 +  18854210 tcaggtagcatggatgtaagctaccaaga-gacatgaagagaaagaagaaaacagaaactaaaaggcttggaagtggttgtttatcagaaaggtaat-----------------------------gggggcaatg---------------gatgaaggGGAAGCAGGTAGCACTAGGAGCCAGGGTCACCAAGAGAATAGGATTATAAGTAGTGGTCCAGGATCCCAGGGACTGTCGCTGTGGCTAGGGCTACTCACTGCCAAGAGAAGACCTTGGCAGTGAATCTACTGAAATATGGA-AAGGACCAGAGAAGCCCTCTGCACCTTTGACCTGAGCAGCCTGGTTCACTCCA----ATGTCTTGGCTCCTTTCCAGAACTTAATGTGATCAATTGTC-CCTAATTCATCTCCTTGAGTGGAATTCCTCCCCCCCCCCACTTTCTATACCCTGGCCACCACCATTTCTGGAAGTGTTACTCTGCACATGTTTGTGGATTT----------GTTGATGTCAGTGAA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58754071 2653 -  94987271 I
e aotNan1.NW_018496901v1     431794  80 -    486031 I

a score=1606192.000000
s hg38.chr6_GL000254v2_alt  1793863 192 +   4827813 GAAAGAG----------------------------------------------------------AGGATAGAAGAG-CACTCACCCAGCAGAGCCAGAGGGAGGCAGCTCCAAGGACTCCAGTGGCCACCAG---------AGCCCACCAGGACCCAGGGCTGGAGGTGCACAGTGAGATCCTCAGC---GCAGAGGGAGAAATCTCCTAAGGGTAGGAAGGAATAA-CAGAATTGGGGAGCATTTCCTTACTTCACAGCAAG
s panTro5.chr6             30640036 192 + 175400573 GAAAGAC----------------------------------------------------------AGGATAGAAGAG-CACTCACCCAGCAGAGCCAGAGGGAGGCAGCTCCAAGGACTCCAGTGGCCACCAG---------AGCCCACCAGGACCCAGGGCTGGAGGTGCATAGTGAGATCCTCAGC---ACAGAGGGAGAAATCTCCTAAGGGTAGGAAGGAATAA-CAGAATTGGGGAGCATTTCCTTACTTCACAGCAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31063999 192 + 173848474 GAAAGAC----------------------------------------------------------AGGATAGAAGAG-CACTCACCCAGCAGAGCCAGAGGGAGGCAGCTCCAAGGACTCCAGTGGCCACCAG---------AGCCCACCAGGACCCAGGGCTGGAGGTGCATAGTGAGATCCTCAGC---ACAGAGGGAGAAATCTCCTAAGGGTAGGAAGGAATAA-CAGAATTGGGGAGCATTTCCTTACTTCACAGCAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     569344 192 +   2037526 GAAAGAG----------------------------------------------------------AGGATAGAAGAG-CACTCACCCAGCAGAGCCAGAGGGAGGCAGCTCCAAGGACTCCAGTGGCCACCAG---------AGCCCACCAGGACCCAGGGCTGGAGGTGCATAGTGAGATCCTCAGC---ACAGAGGGAGAAATCTCCTAAGGGTAGGAAGGAATAA-CAGAATTGGGGAGCATTTCCTTACTTCACAGCAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75226648 192 + 122973662 GAAAGAG----------------------------------------------------------AGGATAGAAGAG-CACTCACCCAGCAGAGCCAGAGGGAGGCAGCTCCAAAGACTCCAGTGGCCACCAG---------AGCCCACCACGACCCAGGGCTGGAGGTGCACAGTGAGATCCTCAGC---GCAGAGGGAGAAATCTCCTAAGGGTAGGAAGGAATAA-CAGAATTGGGGAGCATTTCCTTACTTCACAGCAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31130953 191 + 172585720 GAAAGAG----------------------------------------------------------AGGCTAGAAGAG-CACTCACCCAGCAGAACCAGAGGGAGGCAGCTCCAAGGACTCCAGTGGCCACCAG---------AGTCCACCACGATCCAGGGCTGGACATGCACAGTGAGATCCTCAGC---GCAGAGGGAGAAATCTCCT-GGGGTAGGAAGGAAAAA-CAGAATTGGGGAGCATTTCCTTACTTCACAGCAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30423008 191 - 170955103 GAAAGAG----------------------------------------------------------AGGCTAGAAGAG-CACTCACCCAGCAGAACCAGAGGGAGGCAGCTCCAAGGACTCCAGTGGCCACCAG---------AGTCCACCACGATCCAGGGCTGGACATGCACAGTGAGATCCTCAGC---GCAGAGGGAGAAATCTCCT-GGGGTAGGAAGGAAAAA-CAGAATTGGGGAGCATTTCCTTACTTCACAGCAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     677659 191 +   1495729 GAAAGAG----------------------------------------------------------AGGATAGAAGAG-CACTCACCCAGCAGAACCAGAGGGAGGCAGCTCCAAGGACTCCAGTGGCCACCAG---------AGTCCACCACGATCCAGGGCTGGACATGCACAGTGAGATCCTCAGC---GCAGAGGGAGAAATCTCCT-GGGGTAGGAAGGAAAAA-CAGAATTGGGGAGCATTTCCTTACTTCACAGCAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     779242 191 -    863181 GAAAGAG----------------------------------------------------------AGGATAGAAGAG-CACTCACCCAGCAGAACCAGAGGGAGGCAGCTCCAAGGACTCCAGTGGCCACCAG---------AGTCCACCACGATCCAGGGCTAGACGTGCACAGTGAGATCCTCAGC---GCAGAGGGAGAAATCTCCT-GGGGTAGGAAGGAAAAA-CAGAATTGGGGAGCGTTTCCTTACTTCACAGCAAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29916950 191 -  71996105 GAAAGAG----------------------------------------------------------AGGATAGAAGAG-CACTCACCCAGCAAAGCCAGAGGGAGGCAGCTCCAAGGACTCCAGTGGCCACCAG---------AGTCCACCATGATCCAGGGCTGGAGGTGCACAGTGAGATCCTCAGC---ACAGAGGGAGAAATCTCCT-GGGGTAGGAAAGAAAAA-CAGAATTGGGGAGCATTTCCTTACTTCACAGCAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1        510 192 +    779361 GAAAGAG----------------------------------------------------------AAGATAAAAGAG-CACTCACCCAGCACAGCCAGAGGGAGGCAGCTCCAAGGACTCCAGTGACTACCAG---------AGTCCACCACGATCCAGGGCTGGACATGCACAGTGAGATCTTCAGC---CCAGAGGGAGAAATCTCCTAAGGGTAGGAAGGAAAAA-CAGCGTTGGGAAGCGTTTCCTTACTTCACAGTGAG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     586260 191 -   1829203 GAAAGAG----------------------------------------------------------AAGATAGAAGAG-CACTCACCCAGCAGAGCCAGAGGGAGACAGCTCCAAGGACTCCAGTGGCCACCAG---------AGTCCACCACGATCCAGGGCTGGACATGCACAGTGAGATCTTCAGC---GCAGAGGGAGAAATCTCCT-GGGGTAGGAAGGAAAAA-CAGAATTGGGGAGCATTTCCTTACTTCACAGCAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30790283 191 + 171630274 GAAAGAC----------------------------------------------------------AGGATAGAAGGA-CACTCACCCAGCAGAGCCAAACAGAGGCAGCTCCGAGGACACCAGTGGCCCCCAG---------AGCCCACCACGACCCAGGGCTTGAGATGTGCAGTGAGATCTTCAGC---GCAGAGGGAGAAATCTCCT-AAGGTGGGAAGGAAAAG-CAGACTTGAGAAGCGTTTCCTTGCTTCACAGTGAG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1221797 191 -   1771730 GAAAGAC----------------------------------------------------------AGAATAGAAGGG-CACTCACCCAGCAGAGCCAAAGAGAGGCAGCTCCAAGGACACCAGCGGTCCCCAG---------AGCCCACCACGACCAAGGGCTTGAGACATGCAGTGAGATCTTCAGT---GCAGAGGGAGAAATCTCCT-AAGGTGGGAAGGAAAAA-CAGACTTGAGAAGCGTTTCCATGCTTCACACTGAG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           594815 253 +  18854210 CAAAGAGTTTAGAAGAATGCTCATCCAtctactgagggtgaccaaataagactctgcctcaaaaaaaaaaaaaaGGG-TGCTCACTCAGCACAGCCAAAAGGAGGCAATTCCAAAGACACTAAAGGTGCCCAG---------AGCCCAGGAGAACCCAGCG-TGAAGGTGTTCAGTGAAAGTCTCATCCAGGCAGAGGGAGAAATCTCCTGAGTTTAGGAAATAAAAGCCAGAATTGGGAAGTTATTCTTTGTTTCTCAGAGAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58756724 202 -  94987271 GAAAGAA----------------------------------------------------------ATGCTAACAGGGTTACCTACCCAGCACAGACAGAGAGCTGCAGCTCCCAACACTCCTGTGGTGACCAGGATGGGGGCAATCCCCCAAAGCCTAGGACTAGAAGAGACCCAAAGAAGTTTCAGC---CTCAAGGGAGAGATGTCCTAAGGGCAGAAAGAAAAGT-CAGAGTTAGGAAAGCATCCCTTGCTTCAGAGAAGG
i mm10.chr17               I 2653 T 415
e aotNan1.NW_018496901v1     431794  80 -    486031 I

a score=3470466.000000
s hg38.chr6_GL000254v2_alt  1794055 469 +   4827813 TGCAAACATGATGGGAAGGCATAGAGAAAAAG--GAAGAAATTATAGGGAAATGTGCTTATTTAGGGGGAGGCAATACTGCGG-GAGGGGTA-CAACAGACCC----AGCACTGGTGGGGGCTAGGAGAAACAGGTATAATCCTTGACTAGAGAATGGATACTTGAGG-TCAGAATAGTTACTAAATGAAGAGGATTACATACATTTTAAGGACGTTGATTTACGTTATACTTTGTCATTGGAATTTAAGGGAAAAGAAAGGAAA-TTAATAAATAAAAACAGGCTGCA-TGTGGTAAAATCAATAGTCAGCCCTGGGACTTGTGTTTGCAAAATGCTTTATCCAGGTGCGA-CACCGCTGACGTCCTGGATTCCCCACCCTCTAGCACCCAGTTCCCTCTCCTGTAATGAGACCGGGGTCA-GGAGGAGAGATGGACAGATGAGCCCATGCTGAA-GGCAGTCAGTCATCTGTGCCTGCAGA
s panTro5.chr6             30640228 469 + 175400573 TGCAAACATGATGGGAAGGCATAGAGAAAAAG--GAAGAAATTATAGGGAAACGTGCTTATTTAGGGGGAGGCGATACTGCGG-GAGGGGTA-CAACAGACCC----AGCACTGGTGGGGGCTAGGAGAAACAGGTATAATCCTTGACTAGAGAATGGATACTTGAGG-TCAGAATAGTTACTAAATGAAGAGGATTACATACGTTTTAAGGACGTTGATTTACGTTATACTTTGTCATTGGAATTTAAGGGAAAAGAAAGGAAA-TTCATAAATAAAAACAGGCTGCA-TGTGGTAAAATCAATAGTCAGCCCTGGGACTTGTGTTTGCAAAATGCTTTATACAGGTGCGA-CACCGCTGACGTCCTGGATTCCCCACCCTCTAGCACCCAGTTCCCTCTCCTGTAATGAGACCGGGGTCA-GGAGGAGAGATGGACAGATGAGCCCATGCTGAA-GGCAGTCAGTCATCTTTGCCTGCAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31064191 469 + 173848474 TGCAAACATGATGGGAAGGCATAGAGAAAAAG--GAAGAAATTATAGGGAAACGTGCTTATTTAGGGGGAGGCGATACTGCGG-GAGGGGTA-CAACAGACCC----AGCACTGGTGGGGGCTAGGAGAAACAGGTATAATCCTTGACTAGAGAATGGATACTTGAGG-TCAGAATAGTTACTAAATGAAGAGGATTACATACGTTTTAAGGACGTTGATTTACGTTATACTTTGTCATTGGAATTTAAGGGAAAAGAAAGGAAA-TTCATAAATAAAAACAGGCTGCA-TGTGGTAAAATCAATAGTCAGCCCTGGGACTTGTGTTTGCAAAATGCTTTATACAGGTGCGA-CACCGCTGACGTCCTGGATTCCCCACCCTCTAGCACCCAGTTCCCTCTCCTGTAATGAGACCGGGGTCA-GGAGGAGAGATGGACAGATGAGCCCATGCTGAA-GGCAGTCAGTCATCTGTGCCTGCAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     569536 468 +   2037526 TGCAGACATGATGGGAAGGCATAGAGAAAAAG--GAAGAAAGTATAGGGAAAGGTGCTTATTTAGGGGGAGGCGATACCGCGG-GAGGGGTA-CAACAGACCC----AGCACTGGTGGGGGCTAGGAGAAACAGGTATAATCCTTGACTAGAGAATGGATACTGGAGG-TCAGAATAGTTACTAAATGAAGAGGATTACATA-GTTTTAAGGACGTTGATTTACGTTATACTTTGTCATTGGAATTGAAGGGAAAAGAAAGGAAA-TTCATAAATAAAAACAGGCTGCA-TGTGGTAAAATCAATAGTCAGCCCTGGGACTTGTGTTTGCAAAATGCTTTATCCAGGTGCGA-CACCGCTGACGTCCTGGATTCCCCACCCTCTAGCACCCAGTTCCCTCTCCTGTAATGAGACCGGGGTCA-GGAGGAGAGATGGACAGATGAGCCCATGCTGAA-GGCAGTCAGTCATCTGTGCCTGCAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75226840 470 + 122973662 TGCAAACATGATGGGAAGGCATAGAGAAAAAG--GAAGAAATTACAGGGAAAGGTGCTTATTTAGTGGGAGCTGATACTGCAG-AAGGGGTA-CACCAGACCC----AGCACTGGTGGGGGCTAGGAGAAACAGGTATAATCCTTGACTAGAGAATGGATACTTGAGG-TCAGAATAGTTACTAAATGAAGAGGATTACATACGTTTTAAGGACGTTGATTTACGTTATAGTTTGTCATTGGAAGTTAAGGGAAAAGAAAAGAAACTTCATAAATAAAAACAGGCTGCA-TGTGGTAAAATCAATAATCAGCCCTGGGACTTGTGTTTTCAAGACTCTTTATCCAGGTGCGA-CACCTCTGATGTCCTGGATTCCCCACCCTCTAGCACCCAGTTCCCTCTCCTGTAATGAGACCGGGGTCA-GGAGGAGAGATGGACAGATGGGCCCATGCTGAA-GGCGGTCAGTCACCTGTGCCTGCAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31131144 467 + 172585720 GGCAAACATGATGGGAAGGCATAGAGAAAAAG--GAAGAAATTATAGAGAA--GTGCTTGTTATAGGGGAGGTGATACTGCGGTGAGGGGTACCACCAGA-CC----AGCACTGGTTGGGTGTAGGAGAAATAGGTATAACCCTTGACTAGAGAATGGATACTTGAGG-TCAGAATAGTTGCTAAATGAAGAGGATTGCATACGTTTTAAGGACGTTGATTTTTGTTATAGTTTGTCATTGGAATTTAAGGGAGAAGAAAGGAAA-CTCATAAATAAAAACAGGCTGCA-TGTAGTAAAATCAACAGTCAGCCCTGGGACTTGTGTTTGCAAAATGCTTCATCCAGGTGCGA-CCCCTCTGACTTCCTGGATTCCCCACCCTCTAGCACCCGGTTCCCTCTCCTGTAATGAGA-CGGGGTCA-GGAGGAGAGATGGACACATGGGCCCATGCTGAA-GGCAGTCAGTCACCTGTGCCTGCAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30423199 468 - 170955103 GGCAAACATGATGGGAAGGCATAGAGAAAAAG--GAAGAAATTATAGAGAAAGGTGCTTGTTTAGGGGGAGGTGATACTGCGG-GAGGGGTA-CACCAGACCC----AGCACTGGTTGGGTGTAGGAGAAATAGGTATAACCCTTGACTAGAGAATGGATACTTGAGG-TCAGAATAGTTGCTAAATGAAGAGGATTGCATACGTTTTAAGGACGTTGATTTTTGTTATAGTTTGCCATTGGAATTTAAGGGAGAAGAAAGGAAA-CTCATAAATAAAAACAGGCTGCA-TGTAGTAAAATCAACAGTCAGCCCTGGGACTTGTGTTTGCAAAATGCTTCATCCAGGTGCGA-CCCCTCTGACTTCCTGGATTCCCCACCCTCTAGCACCCGGTTCCCTCTCCTGTAATGAGA-CGGGGTCA-GGAGGAGAGATGGACACATGGGCCCATGCTGAA-GGCAGTCAGTCACCTGTGCCTGCAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     677850 468 +   1495729 GGCAAACATGATGGGAAGGCAGAGAGAAAAAG--GAAGAAATTATAGAGAAAGGTGCTTGTTTAGGGGGAGGTGATACTGCGG-GAGGGGTA-CACCAGACCC----AGCACTGGTTGGGTGTAGGAGAAATAGGTATAACCCTTGACTAGAGAATGGATACTTGAGG-TCAGAATAGTTGCTAAATGAAGAGGATTGCATACGTTTTAAGGACGTTGATTTTTGTTATAGTTTGTTATTGGAATTTAAGGGAGAAGAAAGGAAA-CTCATAAATAAAAACAGGCTGCA-TGTAGTAAAATCAACAGTCAGCCCTGGGACTTGTGTTTTCAAAATGCTTCATCCAGGTGCCA-CCCCTCTGACTTCCTGGATTCCCCACCCTCTAGCACCCGGTTCCCTCTCCTGTAATGAGA-CGGGGTCA-GGAGGAGAGATGGACACATGGGCCCATGCTGAA-GGCAGTCAGTCACCTGTGCCTGCAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     779433 468 -    863181 GGCAAACATGATGGGAAGGCATAGAGAAAAAG--GAAGAAATTATAGAGAAAAGTGCTTGTTTAGGGGGAGGTGATACTGCGG-GAGGGGTA-CACCAGACCC----AGCACTGGTTGGGGGTAGGAGAAATAGGTATAACCCTTGACTAGAGAATGGATACTTGAGG-TCAGAATAGTTGCTAAATGAAGAGGATTGCATACGTTTTAAGGACGTTGATTTTTGTTATAGTTTGTCATTGGAATTTAAGGGAGAAGAAAGGAAA-CTCATGAATAAAAACAGGCTGCA-TGTAGTAAAATCAACAGTCAGCCCTGGGACTTGTGTTTGCAAAATGCTTCATCCAGGTGCGA-CCCCTCTGACTTCCTGGATTCCCCACCCTCTAGCACCCGATTCCCTCTCCTGTAATGAGA-CCGGGTCA-GGAGGAGAGATGGACACATGGGCCCATGCTGAA-GGCAGTCAGTTACCTGTGCCTGCAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29917141 469 -  71996105 TGTAAACATGATGGGAAGGCACAGAGAAAAAG--GAAGAAATTATAGAGAAAGGTGCTTGTTTAGGGGGAGGTGATACTGCGG-GAGGGGTA-CACCAGACCC----AGCACTGGTGGGGGGTAGGAGAAATAGGTATAACCCTTGACTAGAGAATGGATACTTGACG-TCAGAATAGTTACTAAATGAAGAGGATTGCATACGTTTTAAGGACGTTGATTTATGTTATAGTTTGTCATTGGAATTTAAGGGAGAAGAAAGGAAA-CTCATAAATAAAAACAGGCTGCA-TGTGATAAAATCAACAGTCAGCCCTGGGACTTGTGTTTGCAAAATGCTTTATCCAGGTGCGACCCCCTCTGACTTCCTGGATTCCCCACCCTCTAGCACCCAGTTCCCTCTCCTGTAATGAGA-CCGGGTCA-GGAGGAGAGATAGACACATGGGCCCATGCTGAA-GGCAGTCAGTCACCTGTGCCCGCAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1        702 470 +    779361 TGCAAACATGATAGGAAGGCATAGAGAAAAAG--GAAGAAATTATAGGGAAAGGTGCTTGTTTAGGGGGAGATGATGCTGCGG-GAGGGGTA-CACCAGACCC----AGCACTGGTGGGGGGTAGGAGAAACACGTATAACCCTTGACTAGAGAATGGATACTTAAGGATCAATATAGTTACTAGGTGAAGAGGACTACATACGTTTTAAGGACGTTGATGTACATTATAGTGTACTATTGGAAGTTAAGGGGAAAGAAAAGAAATTTCATTAATAAAAACAGGCTGCA-TGTAGTAAAATCAATAATCAGCCCTGGGACTTGTGTTTGCAAAATGCTTCATCCAGGTGCGA-CCCCTCTGACTTCCTGGATCCCCCACCCTCTAGCACCCAGTTCCCTCTCCTGTAATGAGA-CGGGGTCA-GGAGGAGAGATGGACACATAGGCCCATGCTGAA-GGCAGTCAGTTACCTGTGCCTGCAGA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     586451 468 -   1829203 TGCAAACATGATGGGAAGGCATAGAGAAAAAA--GAAGAAATTATAGAGAAAGGTGCTTGTTTAGGGGGAGGTGATACTGCGG-GAGGGGTA-CACCAGACCC----AGCACTGGTGGGGGGTAGGAGAAACAGGTATAACCCTTGACTAGAGAATGGATACTTGAGG-TCAGAATTGTTACTAAATGAAGAGGACTGCATACGTTTTAAGGACGTTGATTTATGTTATAGTTTGTCCTTGGAATTTAAGGGAGAAGAAAGGAAA-CTCATAAATAAAAACAGGCTGCA-TGTGATAAAATCAACAGTCAGCCCTGGGACTTGTGTTTTCAAAATGCTTTATCCAGGTGCGA-CCCCTCTGACTTCCTGGATTCCCCGCCCTCTAGCACCCGGTTCCCTCTCCTGTAATGAGA-GGGGGTCA-GGAGGAGAGATGGACACATGGGCCCATGCTGAA-GGCAGTCAGTCACCTGTGCCTGCAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30790474 471 + 171630274 TGCAAACATGATGAGCAGGCACAGAGGAAAAG--AAAGAAATTATAGGGAAAGGTGCTTGGCTAGGGGGAGGTAACATGGGAC-GAGGGGTA-GATCAGACCC----AGCACTAGGGAGAGGTAGGAGAAACAAGTATAACCCTTATATAGAGAATGGATACTTGAGGGTCTGTATAGTTACTGAGTGAAAAGGATTACATACGTTTTAAGGACATTAATGTACGATATAGTTTATCACTGGAACTTAAGGGAAAGTAAAGAAAATTTCATAAATAAAAACAGGCTGCA-GGTGGTAACATCAATAGTCAGCCCTGGGACTTGTGTTTTCAAAACCTTTTATCCAGGTGCCG-GACCTCTGACTTCCTACATTATCAACCCTCCAGCACCCTGTTCCCTCTCCTGTGATGAGACTGGGGTCA-GGAGAAGAGATGGCCAGATGGGCCCATGCTGAAGGGCAGTCAGCC-CCTGTGCCTGCAGG
i calJac3.chr4             C 0 I 6
s cebCap1.NW_016107755v1    1221988 463 -   1771730 TGCAAACATGATGAGGAGGCAGAGAGCAAAAG--GAAGAAATTATAGGGAAAGGTGCCTGGGTAGGGGGAGGTCACATGGGGC-CAGGGGTA-GACCAGACCC----AGCACTACTGAGAGGTAGGAGAAACATGTATAATCCTTATCTAGACAATGGATACCTGAGGGTCTGCATAGTTACTGAGTGAAGAGGATTGCATGCGTTTTAAGGACATTGATGTCCGTTATAGTTTATCATTGGAAGTTAAGGGAAAGGAAAGGAAATTTCATACATAAAAACAGGCTGCA-GGTGGTAACATCAATAGTCAGCCTTGGGACGTGTGTTTTCAAAACCTTTTAACCAGGTGCCA-GACCTCTGAATTCCTACATTATCAACCCTCCAACACC---------CTCCTGTGATGGGACGGGGGTCA-GGACGAGAGATGGACAGATGGGCCCATGCTGAAGGGCAGTCAGTCACCTGTGCCTGCAGG
i cebCap1.NW_016107755v1   C 0 I 17
s otoGar3.GL873550           595068 427 +  18854210 TGCAAACATACTGGAAACTCCTGGAGAAAAAGAAGAGAGAATTGC----AAAGGCCCTGGGGTGTGGGG-------------G-AGGGGGTA-TGATGGCCTCCCTGGGCACTGGTGAGAGTGGGGGG---CAGGTTTACTCCTAGAATGGACTGTGGATACTTAAAAGTCAAGATA-TTACTGGGTGAAGATGG-TACATATGTTTGAAGAACCTTGAGGTATTTTATA-------ATTGGAAGTGAGGGGAAAAGAAGTAAAACTTCATAAATAAGAACAAATTGGAGTGTGGTG----TAACAGTCAGCCCTGGGTCCTACATTTTTTAAATCTTGTATCCAGGTGCTC-GTCCTCTCCCTTCCTGGATACCTGGCCCTCCTGTGCCCA-TAATCCCTTCTGTCATATTA-GAGTCTCACAGACAAGAGGTGGACAGGAGGACCCATGCTAAA------------------GCTTCCACA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     431794  80 -    486031 I

a score=66266.000000
s hg38.chr6_GL000254v2_alt  1794524 11 +   4827813 TG-AGAAACTGC
s panTro5.chr6             30640697 11 + 175400573 TG-AGAAACTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31064660 11 + 173848474 TG-AGAAACTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     570004 11 +   2037526 TG-AGAAACTGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75227310 11 + 122973662 TG-AGAAACCAC
i nomLeu3.chr1a            C 0 I 33
s rheMac8.chr4             31131611 11 + 172585720 TG-AGAAACCGC
i rheMac8.chr4             C 0 I 33
s macFas5.chr4             30423667 11 - 170955103 TG-AGAAACCGC
i macFas5.chr4             C 0 I 33
s macNem1.NW_012012100v1     678318 11 +   1495729 CG-AGAAACCGC
i macNem1.NW_012012100v1   C 0 I 33
s cerAty1.NW_012002535v1     779901 11 -    863181 TG-AGAAACCGC
i cerAty1.NW_012002535v1   C 0 I 33
s chlSab2.chr17            29917610 11 -  71996105 TG-AGAAACTGC
i chlSab2.chr17            C 0 I 33
s manLeu1.NW_012106264v1       1172 11 +    779361 TG-AGAAACCGC
i manLeu1.NW_012106264v1   C 0 I 33
s colAng1.NW_012115577v1     586919 11 -   1829203 TG-AGAAACCGC
i colAng1.NW_012115577v1   C 0 I 33
s calJac3.chr4             30790951 11 + 171630274 TGCAGAAAAAG-
i calJac3.chr4             I 6 C 0
s otoGar3.GL873550           595495 11 +  18854210 TG-AGAAATCAC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     431794 80 -    486031 I
e cebCap1.NW_016107755v1    1222451 17 -   1771730 I

a score=394247.000000
s hg38.chr6_GL000254v2_alt  1794535 50 +   4827813 -----------AGTTTGCACCACTAGCCTCCAGCACAGAGATTCC--ATCCCAGCTCagtatt
s panTro5.chr6             30640708 50 + 175400573 -----------AGTTTGCACCACTAGCCTCCAGCACAGAGATTCC--ATCCCAGCTCagtatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31064671 50 + 173848474 -----------AGTTTGCACCACTAGCCTCCAGCACAGAGATTCC--ATCCCAGCTCagtatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     570015 50 +   2037526 -----------AGTTTGCACCACTAGCCTCCAGCACAGAGATTCC--ATCCCAGCTCagtatt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75227354 50 + 122973662 -----------AGTTTGCACCACTAGCCTCCAGCACAGAGATTCC--ATCCCAGCTCagcatt
i nomLeu3.chr1a            I 33 C 0
s rheMac8.chr4             31131655 50 + 172585720 -----------AGTTTGAACCACTAGCCTCCAGCACAGGGATTCC--ATCCCAGCTCagtatt
i rheMac8.chr4             I 33 C 0
s macFas5.chr4             30423711 50 - 170955103 -----------AGTTTGAACCACTAGCCTCCAGCACAGGGATTCC--ATCCCAGCTCagtatt
i macFas5.chr4             I 33 C 0
s macNem1.NW_012012100v1     678362 50 +   1495729 -----------AGTTTGAACCACTAGCCTCCAGCACAGGGATTCC--ATCCCAGCTCagtatt
i macNem1.NW_012012100v1   I 33 C 0
s cerAty1.NW_012002535v1     779945 50 -    863181 -----------AGTTTGAACCACTAGCCTCCAGCACAGGGATTCC--ATCCCAGCTCagtatt
i cerAty1.NW_012002535v1   I 33 C 0
s chlSab2.chr17            29917654 50 -  71996105 -----------AATTTGAACCACTAGCCTCCAGCACAGAGAATCC--ATCCCAGCTCagtatt
i chlSab2.chr17            I 33 C 0
s manLeu1.NW_012106264v1       1216 50 +    779361 -----------AGTTTGAACCACTAGCCTCCAGCACAGGGATTCC--ATCCCAGCTCAGTATT
i manLeu1.NW_012106264v1   I 33 C 0
s colAng1.NW_012115577v1     586963 50 -   1829203 -----------AGTTTGAACCACTAGCCTCCAGCACAGGGATTCC--ATCCCAGCTCagtatt
i colAng1.NW_012115577v1   I 33 C 0
s calJac3.chr4             30790962 50 + 171630274 -----------AATTTGCACTGCTAGCCTCCAGCACAGGGATTCC--ATCCCAATTCAGTATT
i calJac3.chr4             C 0 I 3
s cebCap1.NW_016107755v1    1222468 50 -   1771730 -----------AGTTTGCACCGCCAGCCTCCAGCACAGGGATTCC--ATCCCAACTCAGTGTT
i cebCap1.NW_016107755v1   I 17 I 29
s otoGar3.GL873550           595506 59 +  18854210 TACCCTGATAGGGTCT----TATTATACTGTAAAAGAAAGTTTTCTTCTCCCAATTCAAGGTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     431794 80 -    486031 I

a score=95143.000000
s hg38.chr6_GL000254v2_alt  1794585 20 +   4827813 tagtat-------------ttagagatgtagta
s panTro5.chr6             30640758 20 + 175400573 tagtat-------------ttagagatgtagta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31064721 20 + 173848474 tagtat-------------ttagagatgtagta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     570065 20 +   2037526 tagtat-------------ttagagatgtagta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75227404 20 + 122973662 tagtat-------------ttagaggtgtagta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31131705 20 + 172585720 tagtat-------------ttagagatgtagta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30423761 20 - 170955103 tagtat-------------ttagagatgtagta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     678412 20 +   1495729 tagtat-------------ttagagatgtagta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     779995 20 -    863181 tagtat-------------ttagagatgtagta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29917704 20 -  71996105 tagtat-------------ttagagatgtagtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1       1266 15 +    779361 TAGTAT-------------TTAGAGATG-----
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     587013 20 -   1829203 tagtat-------------ttagagatgtagta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30791015 33 + 171630274 TGGGATGGAATACTAAATACTATAGATTTAGTA
i calJac3.chr4             I 3 C 0
s otoGar3.GL873550           595565 10 +  18854210 -------------TCCATCCTAG----------
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     431794 80 -    486031 I
e cebCap1.NW_016107755v1    1222518 29 -   1771730 I

a score=1869206.000000
s hg38.chr6_GL000254v2_alt  1794605 242 +   4827813 tttagtatttagAGATTCCTAAACACTTAGGGGCTCTGCCCAGT------------------CTCCTTCCTCACACTGTGGGGCCTTGGCTTTCCCTCCCA------ACTCCACACCCCCAAATGCTGGTACAATGCTCAGGTTCATCCTGGACACCGCTCCATCCGACAGGGGAACACTTTTGATCCAGACGCTTT--GACAACCTCGTTCAGTCTCCTCTGGAGAGAG-CCGCCAAACCCTTTGCTGATGAGCTGAGACTGACCGG-G
s panTro5.chr6             30640778 241 + 175400573 tttagtatttagAGATTCCTAAACACTGAGGG-CTCTGTCCAGT------------------CTCCTTCCTCACACTGTGGGGCCTTGGCTTTCCCTCCCA------ACTCCACACCCCCAAATGCTGGTACCATGCTCAGGTTCATCCTGGACACCGCTCCATCCGACAGGGGAACACTTTTGATCCAGCCGCTTT--GACATCCTCGTTCAGTCTCCTCTGGAGAGAG-CCGCCAAACCCTTTGCTGATGAGCTGAGACTGACCGG-G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31064741 241 + 173848474 tttagtatttagAGATTCCTAAACACTGAGGG-CTCTGTCCAGT------------------CTCCTTCCTCACACTGTGGGGCCTTGGCTTTCCCTCCCA------ACTCCACACCCCCAAATGCTGGTACCATGCTCAGGTTCATCCTGGACACCGCTCCATCCGACAGGGGAACACTTTTGATCCAGCCGCTTT--GACATCCTCGTTCAGTCTCCTCTGGAGAGAG-CCGCCAAACCCTTTGCTGATGAGCTGAGACTGACCGG-G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     570085 241 +   2037526 tttagtatttagAGCTTCCTAAACACTGAGGG-CTCTGCCCAGT------------------CTCCTTCCTCACACTGTGGGGCCTTGGCTTTCCCTCCCA------ACTCCACACCCCCAAATGCTGGTACCATGCTCAGATTCATCCTGGACACCGCTCCATCCGACAGGGGAACACTTTTGATCCAGCCGCTTT--GACAACCTCCTTCAGTCTCCTCTGGAGAGAG-CCGCCAAACCCTTTGCTGATGAGCTGAGACTGACCGG-G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75227424 241 + 122973662 tttagtatttagAGATTCCTAAACACTGAGGG-CTCTGCCCAAT------------------CTCCTTCCTCACACTGTGGGGCCTTGGCTTTCCCTCCCA------ACTCCACACCCCCAGATGCTGGTACCATGCTCAGGTTCATCATGGACAGGGCTCCATCCGACATGGGAACACTTTTGATCCAGCCGCTTT--GACAATCTCGTTCAGCCTCCTCTGGAGACAG-CCACCAAGCCCTTTGCTGATGAGCTGAGACTGACCAG-G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31131725 257 + 172585720 tttagtatttagAGATTCCTAAACACTGAGGG-CTCTGCCCAGTCTGG-TTTGACCATGGGCCTCCTTCCTCACACTGTGGGGCCCCAGCTTTCCCTCCCA------ATTCCACACCCCCAGATGCTGGTACCATGCTCAGGTTCATCGTGGACACCGCTCCATCCGACATGGCAACACTTCTGATCCAGCCGCTTT--GACAACCTCGTCCAGTCTCCTCTGGAGAGAG-CCACCGAGCCCTTTGCTGATGAGCTGAGACTGACGGG--
i rheMac8.chr4             C 0 I 5
s macFas5.chr4             30423781 257 - 170955103 tttagtatttagAGATTCCTAAACACTGAGGG-CTCTGCCCAGTCTGG-TTTGACCATGTGCCTCCTTCCTCACACTGTGGGGCCCCAGCTTTCCCTCCCA------ATTCCACACCCCCAGATGCTGGTACCATGCTCAGGTTCATCGTGGACACCGCTCCATCCGACATGGCAACACTTCTGATCCAGCCGCTTT--GACAACCTCGTCCAGTCTCCTCTGGAGAGAG-CCACCGAGCCCTTTGCTGATGAGCTGAGACTGACGGG--
i macFas5.chr4             C 0 I 5
s macNem1.NW_012012100v1     678432 257 +   1495729 tttagtatttagAGATTCCTAAACACTGAGGG-CTCTGCCCAGTCTGG-TTTGACCATGTGCCTCCTTCCTCACACTGTGGGGCCCCAGCTTTCCCTCCCA------ATTCCACACCCCCAGATGCTGGTACCATGCTCAGGTTCATCGTGGACACCGCTCCATCCGACATGGCAACACTTCTGATCCAGCCGCTTT--GACAACCTCGTCCAGTCTCCTCTGGAGAGAG-CCACCGAGCCCTTTGCTGATGAGCTGAGACTGATGGG--
i macNem1.NW_012012100v1   C 0 I 5
s cerAty1.NW_012002535v1     780015 257 -    863181 tttagtatttagAGATTCCTAAACACTGAGGG-CTCTGCCCAGTCTGG-TTTGACCATGTGCCTCCTTCCTCACACTGTGGGGCCCCAGCTTTCCCTCCCA------ATTCCACACCCCCAGATGCTGGTACCATGCTCAGGTTCATCGTGGACACCGCTCCATCCGACATGGCAACACTTCTGATCCAGCCGCTTT--GACAACCTCGTCCAGTCTCCTCTGAAGAGAG-CCACCGAGCCCTTTGCTGATGAGCTGAGACTGACGGG--
i cerAty1.NW_012002535v1   C 0 I 5
s chlSab2.chr17            29917724 258 -  71996105 tttagtatttagAAATTCCTAAACACTGAGGG-CTCTGCCCAGTCTGG-TTTGACCATGCGCCTCCTTCCTCACACTGTGGGGCCTTGGCTTTCCCTCCCA------ATTCCACACCCCCAGATGCTGGTACCATGCTCAGGTTCATCGTGGACACCGCTCCATCCGACATGGCAACACTTCTGATCCAGCTGCTTT--GACAACCTCGTCCAGTCTCCTCTGGAGAGAG-CCACCGAGCCCTTTGCTGATGAGTTGACACTGACGACG-
i chlSab2.chr17            C 0 I 7
s manLeu1.NW_012106264v1       1281 256 +    779361 --TGGTATTTCGAGATCCCTAAATACTGAGGA-CTCTGCCCAGTCTGG-TTTGACCATGGGCCTCCTTCCTCACACTGTGGGGCCCCAGCTTTCCCTCCCA------ATTCCACACCCCCAGATGCTGGTACCATGCTCAGGTTCATCGTGGACACGGCTCCATCCGACATGGCAACACTTTTGATCCAGCCGCTTT--GACAACCTCGTTCAGTCTCCTCTGGAGACAG-CCACCAAGCCCTTTGCTGATGAGCTGGGACTGACAGGG-
i manLeu1.NW_012106264v1   C 0 I 42
s colAng1.NW_012115577v1     587033 256 -   1829203 tttagtattgagAGATTCCTAAACACTGAGGG-CTCTGCCCAGTCTCG-TTTCACCATGTGCCTCCTTCCT-ACACTGTGGGGCCTCGGCTTTCCCTCCCA------ATTCCACACCCCCAGATGCTGGTACCATGGTCAGATTCATCGTGGACACCGTTCCATCCGACATGGGAACACTTTTGATCCAGTCGCTTT--GACAACCTCGTCCAGTCTCCTCTGGAGAGAG-CCACCGAGCCCTTTGCTGATGAGCTGAGACTGACGGG--
i colAng1.NW_012115577v1   C 0 I 5
s calJac3.chr4             30791048 257 + 171630274 TTTAGTATTTAGAGATTCCTAAATACCGAGGA-CTCTGCCCAGTCTGG-TTTGATCATGAGCCTCCTTCCTTCCACTGTGGGACGCCGGCTGTACTTCCCA------TTTCCACACCCCCGGATCCTGGTACCAAGCTCAGGTTCATGGTGGAAGCCGCTCCATCCGACATGGCAATGCTTTTGATTCAGACGCTTT--GACAACTTCGTCCAGTCTCCTCCGGAGGGAG-TCACCCAGCCCTTTGCTGATGAGCTGGGACTGACGGG--
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1222547 257 -   1771730 TTTAGTATTTAGAGATTCCTAAATACTGAGAG-CTCTGCCCAGTCTGG-TCTGACCATGAGCCTCCTTCCTTCCACTGTGGGGCCCCGCCTTTACTTCCCA------TCTCCACACCCCCAGATCCTGGTACCAGGCTCAGGTTCATCGTGGAAGCCGCTCCATCCGACATGGCAATACTTTTGATTCAGACGCTTT--GACAACCTCGTCCAGTCTCCTCTGTGGGGAG-CCACCGAGCCCTTTGCTGATGCGCTGGGACAGACGGG--
i cebCap1.NW_016107755v1   I 29 C 0
s otoGar3.GL873550           595575 257 +  18854210 --------TTGGAGATTCCTGAA-ACTGAGGG-CTCAGTCCAGTGGGGTTTTAACTGTGTG-CTCCCTTCCCGTGCTCCTGGACCCAGGCTATCCCCTCCCTGTCCTGCTCTACATGCCCAGATCTTCCTGCAAGAGTCAGGTTCATCGCAGGTGCTCCTTGGTCCTCTGTGGCAGTGCTTCTGATCCAGCCACTCTCCAACAATCTTGTCCAGTCTCCTCTAGTGAGTGCCCAGCCTGCCCTTTACTGGTGAGCTCTGGCTGAGGGG--
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     431794  80 -    486031 I

a score=9632.000000
s hg38.chr6_GL000254v2_alt  1794847 4 +   4827813 GAAC
s panTro5.chr6             30641019 4 + 175400573 GAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31064982 4 + 173848474 GAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     570326 4 +   2037526 GAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75227665 4 + 122973662 GAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31131987 4 + 172585720 GGGT
i rheMac8.chr4             I 5 C 0
s macFas5.chr4             30424043 4 - 170955103 GGGT
i macFas5.chr4             I 5 C 0
s macNem1.NW_012012100v1     678694 4 +   1495729 GGGT
i macNem1.NW_012012100v1   I 5 C 0
s cerAty1.NW_012002535v1     780277 4 -    863181 GGGT
i cerAty1.NW_012002535v1   I 5 C 0
s chlSab2.chr17            29917989 4 -  71996105 GGGT
i chlSab2.chr17            I 7 C 0
s colAng1.NW_012115577v1     587294 4 -   1829203 GGGT
i colAng1.NW_012115577v1   I 5 C 0
s calJac3.chr4             30791305 4 + 171630274 AACA
i calJac3.chr4             C 0 I 4
s cebCap1.NW_016107755v1    1222804 4 -   1771730 GAAC
i cebCap1.NW_016107755v1   C 0 I 39
s otoGar3.GL873550           595832 4 +  18854210 AAAT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     431794 80 -    486031 I
e manLeu1.NW_012106264v1       1537 42 +    779361 I

a score=129451.000000
s hg38.chr6_GL000254v2_alt  1794851 40 +   4827813 -------------TGTGATCTCGGATGTGGTTGAGGAT---CAAAATCAAAATTAT
s panTro5.chr6             30641023 40 + 175400573 -------------TGTGATCTCGAATGTGGTTGAGGAT---CAAAATCAAAATTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31064986 40 + 173848474 -------------TGTGATCTCGAATGTGGTTGAGGAT---CAAAATCAAAATTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     570330 40 +   2037526 -------------TGTGATCTCGAATGTGGTTGAGGAT---CAAAATCAAAATTAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75227669 40 + 122973662 -------------TTCGATCTCGGATGTGGTTGGGGAT---CAAAATCAAAATTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31131991 34 + 172585720 -------------TGCGATATCCGATGCGGTTGAGGAT---CACCACCAA------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30424047 34 - 170955103 -------------TGCGATATCCGATGCGGTTGAGGAT---CACCACCAA------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     678698 34 +   1495729 -------------TGCGATATCCGATGCGGTTGAGGAT---CACCATCAA------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     780281 34 -    863181 -------------TGCGATATCCGATGCGGTTGAGGAT---CACCACCAA------
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29917993 34 -  71996105 -------------TGCGATATCGGATGCGGTTGGGGAT---CAACACCAA------
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     587298 34 -   1829203 -------------TGCGATATCCGATGCGGCTGGGGAT---CAACACCAA------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30791313 34 + 171630274 -------------TGCGATCTCGGAAGGGGTTGGAGTT---GGACACCAC------
i calJac3.chr4             I 4 C 0
s otoGar3.GL873550           595836 50 +  18854210 TGGGCTCCCATCTCTTGATCTTAGATAGGGCTGGGAAGAGACACTACTAA------
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     431794 80 -    486031 I
e cebCap1.NW_016107755v1    1222808 39 -   1771730 I
e manLeu1.NW_012106264v1       1537 42 +    779361 I

a score=8281.000000
s hg38.chr6_GL000254v2_alt  1794891 1 +   4827813 A
s panTro5.chr6             30641063 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31065026 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     570370 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75227709 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31132025 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30424081 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     678732 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     780315 1 -    863181 A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29918027 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1       1579 1 +    779361 A
i manLeu1.NW_012106264v1   I 42 C 0
s colAng1.NW_012115577v1     587332 1 -   1829203 A
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30791347 1 + 171630274 A
i calJac3.chr4             C 0 C 0
s otoGar3.GL873550           595886 1 +  18854210 A
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     431794 80 -    486031 I
e cebCap1.NW_016107755v1    1222808 39 -   1771730 I

a score=151179.000000
s hg38.chr6_GL000254v2_alt  1794892 23 +   4827813 GTCGACTCTTAAAGACCAAGTAG
s panTro5.chr6             30641064 23 + 175400573 GTCGACTCTTAAAGACCAAGTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31065027 23 + 173848474 GTCGACTCTTAAAGACCAAGTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     570371 23 +   2037526 GTCGACTCTTAAAGACCAAGTAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75227710 23 + 122973662 GTCGACTCTTAAAGACCAAGTAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31132026 23 + 172585720 GTCGTCTCTTCACGACCAAGTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30424082 23 - 170955103 GTCGTCTCTTCACGACCAAGTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     678733 23 +   1495729 GTCTTCTCTTCACGACCAAGTAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     780316 23 -    863181 GTCGTCTCTTCACGACCAAGTAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29918028 23 -  71996105 GTCGTCTCCTAACGACCAAGTAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1       1580 23 +    779361 GTCGTCTTCTAAAGACCAAGTAG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     587333 23 -   1829203 GTCGTCTCTTAACGACCAAGTAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30791348 23 + 171630274 GTCCTCTTCTAACCAGCGAGTAG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1222847 23 -   1771730 GTCGTCTTCTAACCACCGAGTGG
i cebCap1.NW_016107755v1   I 39 C 0
s otoGar3.GL873550           595887 22 +  18854210 GTTTTCTTTTAAGCACCAAGCA-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     431794 80 -    486031 I

a score=409056.000000
s hg38.chr6_GL000254v2_alt  1794915 53 +   4827813 GCTCTAACCACGGAATTCCTCTCTACCCACTGATTCCCCCAAAAGAGGAAGAA
s panTro5.chr6             30641087 53 + 175400573 GCTCTAACCACGGAATTCCTCTCTACCCACTGATTCCACCAAAAGAGGAAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31065050 53 + 173848474 GCTCTAACCACGGAATTCCTCTCTACCCACTGATTCCACCAAAAGAGGAAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     570394 53 +   2037526 GCTCTAACCACGGAATTCCTCTCTAACCGCTGATTCCCCCAAAAGAGGAAGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75227733 53 + 122973662 GCTCTAACCACGGAATTCGTCTCTAACCACTGATTGCCCCAGAAGAGGAAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31132049 53 + 172585720 GCTCTAACCACAGAAGTCGTCTCCAAACACTGATTCCCCCAGAAGAGGAAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30424105 53 - 170955103 GCTCTAACCACAGAAGTCGTCTCCAAACACTGATTCCCCCAGAAGAGGAAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     678756 53 +   1495729 GCTCTAACCACGGAAGTCGTCTCCAAACACTGATTCCCCCAGAAGAGGAAGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     780339 53 -    863181 GCTCTAACCACAGAAGTCGTCTCCAAACACTGATTCCCCCAGAAGAGGAAGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29918051 53 -  71996105 GCTCTAACCACGGAAGTCGTCTCCAACCACTGATTCCCCCAGAAGAGGAAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1       1603 53 +    779361 GCTCTAACCACGGAATTCGTCTCTAACCAGTGACTCCTCCAGAAGAGGAAGAA
i manLeu1.NW_012106264v1   C 0 I 327
s colAng1.NW_012115577v1     587356 53 -   1829203 GCTCTAACCGCGGAAGTCGTCTCTAACCACTGATTCCCCCAGAAGAGGAAGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30791371 52 + 171630274 GCTCTAACTCCGGAATTC-TCTCTAACCCCTGACTCCTCCAGAAGAGGAAGAA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1222870 53 -   1771730 GCTCTAACCACGGAATTCAACTCTAACCACTGACTCCTCCAGAAGAGGAAGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     431874 53 -    486031 GCTCTAACCAAGGAATTCAACTCTAACCACTGACTCCTCCAGAAGAGGAAAAA
i aotNan1.NW_018496901v1   I 80 C 0
s otoGar3.GL873550           595909 28 +  18854210 ---CCAAC-----------ATTATCATCTCTGTTTCTCCCTA-----------
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T

a score=2492.000000
s hg38.chr6_GL000254v2_alt  1794968 1 +   4827813 G
s panTro5.chr6             30641140 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31065103 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     570447 1 +   2037526 G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75227786 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31132102 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30424158 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     678809 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     780392 1 -    863181 A
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29918104 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     587409 1 -   1829203 A
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30791423 1 + 171630274 A
i calJac3.chr4             C 0 I 4
s cebCap1.NW_016107755v1    1222923 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 I 4
s aotNan1.NW_018496901v1     431927 1 -    486031 G
i aotNan1.NW_018496901v1   C 0 I 20
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           595937 0 +  18854210 C
e manLeu1.NW_012106264v1       1656 327 +    779361 I

a score=276933.000000
s hg38.chr6_GL000254v2_alt  1794969 83 +   4827813 CCTCT---TCTCTAAGTACACTAAGCTGAAAAACTAAGCTGAAGTAC-------------TAAGTACATTCAGCTTTCAC---TAAGCTGAAACAGCAAAGC
s panTro5.chr6             30641141 83 + 175400573 CCTCT---TCTCTAAGTACACTAAGCTGAAAAACTAAGCTGAAGTAC-------------TAAGTACATTCAGCTTTCAC---TAAGCTGAAACAGCAAAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31065104 83 + 173848474 CCTCT---TCTCTAAGTACACTAAGCTGAAAAACTAAGCTGAAGTAC-------------TAAGTACATTCAGCTTTCAC---TAAGCTGAAACAGCAAAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     570448 83 +   2037526 CCTCT---TCTCTAAGTACACTAAGCTGAAAAACTAAGCTGAAGTAC-------------TAAGTACATTCAGCTTTCAC---TAAGCTGAAACAGCAAAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75227787 83 + 122973662 CCCCT---TCTCTATGTACACTAAGCTGAAAAACTAAGCTGAAGTAC-------------TAAGTACATTCAGCTTTCAC---TAAGCTGAAACAGCAAACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31132103 98 + 172585720 CCTCT---TCTCTAAGTACACTAAGCCGAAAAACTAAGCGGAAATACTAAACTGAAATAATAAGTACATTAAGCTGACAAAA-TAAGTTGAAACAGCGAACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30424159 98 - 170955103 CCTCT---TCTCTAAGTACACTAAGCCGAAAAACTAAGCGGAAATACTAAACTGAAATAATAAGTACATTAAGCTGACAAAA-TAAGTTGAAACAGCGAACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     678810 98 +   1495729 CCTCT---TCTCTAAGTACACTAAGCCGAAAAACTAAGCGGAAATACTAAACTGAAATAATAAGTACATTAAGCTTACAAAG-TAAGTTGAAACAGCGAACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     780393 98 -    863181 CCTCT---TCTCTAAGTACACTAAGCCGAAAAACTAAGCGGAAATACTAAACTGAAATAATAAGTACATTAAGCTGACAAAA-TAAGTTGAAACAGCGAACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29918105 98 -  71996105 CCTTT---TCTCTAAGTACACTAAGCCGAAAAACTAAGCGGAAATACTAAGCTGAAATAATAAGTACATTAAGCTTACAAAA-TAAGTTGAAACAGCAAACC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     587410 98 -   1829203 CCGCT---TCTCTAAGTACGCTAAGCCGAAAAACTAAGCGGAAATACTAAGCTGAAATAATAAGTACATTAAGCTTACAAAA-TAAGTTGAAACAGCAAACC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30791428 16 + 171630274 --------CCTCTCGGTACACTAA------------------------------------------------------------------------------
i calJac3.chr4             I 4 C 0
s cebCap1.NW_016107755v1    1222928 16 -   1771730 --------CCTCTCGGTACACGAA------------------------------------------------------------------------------
i cebCap1.NW_016107755v1   I 4 C 0
s otoGar3.GL873550           595937 56 +  18854210 TCTCTATCTCTCTAAG-ACACCTCTCT-------------------------------------CACACTCTGTCACCCAGACTTATGTAAAAC--------
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     431928 20 -    486031 I
e manLeu1.NW_012106264v1       1656 327 +    779361 I

a score=795419.000000
s hg38.chr6_GL000254v2_alt  1795052 135 +   4827813 GCTGAAACAGCAAACCGCAGGCATAACAGAAAAACCTCAAC------------------TTA-----------------------------------AATAGTGCTGAGCTGCAACTTGTTTTCCGCGGCTTGTAGTCGAGGAGGAGCCCACGAGGCTTTAGCTGCTGCAAGATCCAAGCGCGCTCCC
s panTro5.chr6             30641224 135 + 175400573 GCTGAAACAGCAAACCGCAGGCATAACAGAAAAACCTCAAC------------------TTA-----------------------------------AATAGTGCTGAGCTGCAACTTGTTTTCCGCGGCTTGTAGTCGAGGAGGAGCCCACGAGGCTTTAGCTGCTGCAAGATCCAAGCGCGCTCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31065187 135 + 173848474 GCTGAAACAGCAAACCGCAGGCATAACAGAAAAACCTCAAC------------------TTA-----------------------------------AATAGTGCTGAGCTGCAACTTGTTTTCCGCGGCTTGTAGTCGAGGAGGAGCCCACGAGGCTTTAGCTGCTGCAAGATCCAAGCGCGCTCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     570531 135 +   2037526 GCTGAAACAGCAAACCGCAGGCATAACAGAAAAACCTCAAC------------------TTA-----------------------------------AATAGTGCTGAGCTGCAACTTGTTTTCCGCGGCTTGTAGTCGAGGAGGAGCCCACGAGGCTTTAGCTGCTGCAAGATCCAAGCGCGCTCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75227870 135 + 122973662 GCTGAAACAGCAAACCGCAGGCATGACAGAAAAACCTCAAC------------------TTA-----------------------------------AATAGTGTGGAGCTGCAACTTGTTTTCCGCGGCTTGTAGTCGAGGAGGAGCCCACGAGTCTTTAGCGGCTGCAAGATCCAAGCGCGCTCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31132201 153 + 172585720 GCTGAAAAAGCAAACCTCAGGCATGACTGAAAAACCTCAAC------------------TTAAAGAGTGTGTCGCTGCCA-----------------AAGAGTGTGTCGCTGCCACTTGTTTTCCGCGGCTTGTGGTGGAGGAGGAGTGCGCCAGGCTTTAGCGGCTGCAAGACCCAAGCGCGCTCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30424257 152 - 170955103 GCTGAAAAAGCAAACCTCAGGCATGACTGAAAAACCTCAAC------------------TTAAAGAGTGTGTCGCTGCC------------------AAGAGTGTGTCGCTGCCACTTGTTTTCCGCGGCTTGTGGTCGAGGAGGAGTGCGCCAGGCTTTAGCGGCTGCAAGATCCAAGCGCGCTCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     678908 170 +   1495729 GCTGAAAAAGCAAACCTCAGGCATGACTGAAAAACCTCAACTTAAAGAGTGTGTCGCTGTTAAAGAGTGTGTCGCTGCC------------------AAAAGTGTGTCGCTGCCACTTGTTTTCCGCGGCTTGTGGTCGAGGAGGAGTGCGCCAGGCTTTAGCGGCTGCAAGATCCAAGCGCGCTCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     780491 186 -    863181 GCTGAAAAAGCAAACCTCAGGCATGACTGAAAAACCTCAACTTAAAGAGTGTGTCGCTGCCAAAGAGTGTGTCGCTGCCAAAGAGCGTGTCGCTGCCAAGAGTGTGTCGCTGCCACTTGTTTT-AGCGGCTTGTGGTCGAGGAGGAA-GCGCCAGGCTTTAGCGGCTGCAAGATCCAAGCGCGCTCCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29918203 135 -  71996105 GCTGAAAGAGCAAACCTCAGACATGACTGAAAAACCTCAAC------------------TTA-----------------------------------AATAGTGCGGAGCTGCCACTTGTTTTCCGCGGCTTGTGGTCGAGGAGGAGCCCGCCAGGCTTTAGCGGCTGCAAGATCCAAGCGCGCTCCC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     587508 134 -   1829203 GCTGAAAGAGCAAACCTCAGGCATGACTGAAAAACCTCAAC------------------TTA-----------------------------------AATAGTGCGGAGCTGCCACTTGGTTTCAGCGGCTTGTAGTCGAGGAGGCA-GCGCGAGGCTTTAGCGGCTGCAAGATCCAAGCGCGCTCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30791444 135 + 171630274 GCTGAAACCGCAAACCGCAGCCCTAGCAGAGAAACTGCCAC------------------TTA-----------------------------------AATAGTGCAGAGCTGCCACTAGATGTCCCAGGCTTGTAGTCGGGGAGGAAACCGCGAGGCTGTAGCGGCTGCTTGATCCGAGCGCGCTCCC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1222944 135 -   1771730 GCTGAAACCGCAAACCGCAGCCATGGCAGAGAAACCTCAGC------------------TTA-----------------------------------AATAGTGCAGAGCTGCCACTAGATATCCGAGGCTTGTAGTCCAGGAGGAGCCCGCGAGGCTGTAGCGGCTGCGAGATCCGCGCGCGCTCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     431948 135 -    486031 GCTGAAACCGCAAACCGCAGCCATGGCAGAGAAACTGCTGC------------------TTA-----------------------------------AATAGTGCAGAGCTGCCACTAGATGTGCGAGGCTTGTAGTCCAGAAGGAGCCCTCGAGGCGGTAGCAGCTGCGAGATCCGAGCGCGCTCTT
i aotNan1.NW_018496901v1   I 20 C 0
s otoGar3.GL873550           595993  81 +  18854210 -------CAGAGAACCACAGAACTCCTCTTCTAACCACACC------------------ACA-----------------------------------AGAAACA----------------------------------GAGAAGGAACTAGCAGGGCCCC------------ACCCAAGCAACCTTC-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e manLeu1.NW_012106264v1       1656 327 +    779361 I

a score=6843346.000000
s hg38.chr6_GL000254v2_alt  1795187 864 +   4827813 GCCCAGCGGTGGCCCCGGGCTCAGGGAACCAGCGCTGCTTCTCTCCG------A----GGCTCGCGGCC-----TGAGAAAC---CTTCCGC------TCCGAATGCGGGCTGGCCTCTCCGGGAAGCCTTGAAACTCAAC--TCCTGGGTGGGCCAGGAAGGTTGTCCGAGTTGGGCAGCGCC----GGCCGGGGCCCCCCTCAGAGCCGAGCTGCTCGCCTCCCTCGAGACCCAGCGCAGCCTGGAGG--AGAGACCGGGTCCTCTCAGGT-GGGG-CACTTGGTGACTAGAGACCCCATGAGCCCCCACCCTCCAGCCTGG------GGCGGGATAGCCCAATCGGATGCTGGGG---GGTCC--GTTTGGAAACCACTCTCTGCTTTGAGGACACGCGCGGAGCTTCCCTGGGAGCA-GGAGGCTCTGAAGGAAGAGGGGCAGACGCGAAGCCTCTGGCCAGCCGCGCCTCCGGTCCAGGCCTCCCTGTGTCCACATCAGGTCTCCCGGCTTTTCACAACAGTGACCTTGACAGCGCCCAGAGTCCGCGGCTTCCATCCAGTCCCCT-CTTCCCCTGCGAGGCCGAGAGGGTG-CAGAGCTGGTGGCTTCAGGAGGTGGCTGTGAGCGCGGGTCTGGGGCCAAGAGCAGAGGA-CAGGAGAAGA-CTGCCAAGCCACCACCGGTCCTGCGACATATTCACCAGCTGCCGGCGGCG---AGGTCAGA--CCCCAGATTCGGGTTTGCCCAGCAGGCGCTCGGCGTCCATGCTCGCTCTC-CACCTCCCTGCCTCTCTTAAGGAGGACCTGGCCCATTAGGAAGCCCG-GG-GCGTTCTGTGGACTGGGTGGTCAAAAATGGTGTGTGGAGGAGGGAGTCAATTGAGATTAGACGTGAAAAACGGGGAACCTGGGGACCG
s panTro5.chr6             30641359 868 + 175400573 GCCCAGCGGTGGCCCCGGGCTCAGGGAACCAGCGCTGCTTCTCTCCG------A----GGCTCGAGGCC-----TGAGAAAC---CTTCCGC------TGCGAATGCGGGCTGGCCTCTCCGGGAAGCCTTGAAACTCAAC--TCCCGGGTGGGCCAGGAAGGTTGTCCGAGTTGGGCAGCGCC----GGCCGGGGCCCCCCTCAGAGCCGAGCTGCTCGCCTCCCTCGAGGCCCAGCGCAGCCTGGAGG--AGAGACCGGGTCCTCTCAGGT-GGGGGCCCTTGGTGACTGACGACCCCATGAGCCCCCACCCTCCAGCCTGG------GGCGGGATGGCCCAATCGGATGCTGGGG---GGTCC--GTTTGGAAACCACTCTCTGCTTTGAGAACACGCGCGGAGCTTCCCTGGGAGCA-GGAGGCTCTGAAGGAAGAGGGGCAGACGCGAAGCCTCTGGTCAGCCGCGCCTCCGGTCCAGGCCTCCCTGTGTCCACATCAGGTCTCCCGGCTTTTCACAACAGTGACCTTGACAGCGCCGAGAGTCCGCGGCTTCCGTCCAGTCCCCT-CTTCCCCTGCGTGGCCGAGAGGGTG-CAGAGCTGGTGGCTTCAGGAGGTGGCTGTGAGCGCGGGTCTGGGGCCAAGAGCAGAGGA-CAGGAGAAGA-CTGCCAAGCCACCACCGGTCCTGCGACATATTCACCGGCTGCCGGCGGCGGCGAGGTCAGG--CCCCAGATTCGGGTTTGACCAGCAGGCGCTCGGCGTCCATGCTCGCTCTC-CACCTCCCTGCCTCTCTTAAGGAGGACCTGGCCCATTAGGAAGCCTG-GG-GCGTTCTGTGGACTGGGTGGTCAAAAATGGTGTGTGGAGGAGGGAGTCAATTGAGATTAGACGTGAAAAACGGGGAACCTGGGGACCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31065322 867 + 173848474 GCCCAGCGGTGGCCCCGGGCTCAGGGAACCAGCGCTGCTTCTCTCCG------A----GGCTCGAGGCC-----TGAGAAAC---CTTCCGC------TGCGAATGCGGGCTGGCCTCTCCGGGAAGCCTTGAAACTCAAC--TCCCGGGTGGGCCAGGAAGGTTGTCCGAGTTGGGCAGCGCC----GGCCGGGGCCCCCCTCAGAGCCGAGCTGCTCGCCTCCCTCGAGGCCCAGCGCAGCCTGGAGG--AGAGACCGGGTCCTCTCAGGT-GGGG-CCCTTGGTGACTGACGACCCCATGAGCCCCCACCCTCCAGCCTGG------GGCGGGATAGCCCAATCGGATGCTGGGG---GGTCC--GTTTGGAAACCACTCTCTGCTTTGAGAACACCCGCGGAGCTTCCCTGGGAGCA-GGAGGCTCTGAAGGAAGAGGGGCAGACGCGAAGCCTCTGGTCAGCCGCGCCTCCGGTCCAGGCCTCCCTGTGTCCACATCAGGTCTCCCGGCTTTTCACAACAGTGACCTTGACAGCGCCGAGAGTCCGCGGCTTCCGTCCAGTCCCCT-CTTCCCCTGCGTGGCCGAGAGGGTG-CAGAGCTGGTGGCTTCAGGAGGTGGCTGTGAGCGCGGGTCTGGGGCCAAGAGCAGAGGA-CAGGAGAAGA-CTGCCAAGCCACCACCGGTCCTGCGACATATTCACCGGCTGCCGGCGGCGGCGAGGTCAGG--CCCCAGATTCGGGTTTGCCCAGCAGGCGCTCGGCGTCCATGCTCGCTCTC-CACCTCCCTGCCTCTCTTAAGGAGGACCTGGCCCATTAGGAAGCCCG-GG-GCGTTCTGTGGACTGGGTGGTCAAAAATGGTGTGTGGAGGAGGGAGTCAATTGAGATTAGACGTGAAAAACGGGGAACCTGGGGACCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     570666 864 +   2037526 GCCCAGCGGTGGCCCCGGGCTCAGGGAACCAGCGCTGCTTCTCTCCG------A----GGCTCGCGGCC-----TGAGAAAC---CTTCCGC------TCCGAATGCGGGCTGGCCTCTCCGGGAAGCCTTGAAACTCAAC--TCCCGGGTGGGCCAGGAAGGTTGTCCGAGTTCGGCAGCGCC----GGCCGGGGCCCCCCTCAGAGCCGAGCTGCTCGCCTCCTTCGAGGCCCAGCGCAGCCTGGAAG--AGAGACCGGGTCCTCTCAGGT-GGGG-CCCTTGGTGACTGGCGACCCCATGAGCCCCCACCCTCCAGCCTGG------GGCGGGATAGCCCAATCGGATGCTGGGG---GGTGC--GTTTGGAAACCACTCTCTGCTTTGAGAACACGCGCGGAGCTTCCCTGGGAGCC-GGAGGCTCTGAAGGAAGAGGGGCAGACGCGAAGCCTCTGGCCAGCCGCGCCTCCGGTCCAGGCCTCCCTGTGTCCACATCAGGTCTCCCGGCTTTTCACAACAGTGACCTTGACAGCGCCGAGAGTCCGCGGCTTCCATCCAGTCCCCT-CTTCCCCTGCGTGGCCGAGAGGGTG-CAGAGCTGGTGGCTTCAGGAGGTGGCTGTGAGCACGGGTCTGGGGCGAAGAGCAGAGGA-CAGGAGAAGA-CTGCCAAGCCACCACCGGTCCTGCGACATATTCACCGGCTGCCGGCGGCG---AGGTCAGG--CCCCAGATTCGGGTTTGCCCAGCAGGCGTTCGGCGTCCATGCTCGCTCTC-CACCTCCCTGCCTCTCTTAAGGAGGACCTGGCCCATTAGGAAGCCCG-GG-GCGTTCTGTGGACTGGGTGGTCAAAAATGGTGTGTGGAGGAGGGAGTCAATTGAGATTAGACGTGAAAAACGGGGAACCTGGGGACCG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75228005 849 + 122973662 TCCCAGCGGTGGCCCCGGGCTCAGGGAACCAGGGCTGCTTCT------------------CTCGGGGCC-----TGAGAAAC---CCTCCGC------TCCGAATCCGGGCTGGCCTCTCGGGGAAGCCTTGAAACTCAAC--TCCCGGGTGGGCCAGGAAGGCTGTGCGAGTTGGGCAGCACC----AGCCGGGGCCTCCCTCAGAGCCGAGCTGCTCGCCGCCCTCGACGCCCAGCGCAGCCTGGAGG--AGAGACGGGGTCCGCTCAGAT-GGGG-CCCTTGGTGCCTGGCGACCCCATGAGCCCCCACCCTCCAGCCTGG------GGCGGGATGGCCCAATTGGATGCTGGGG---GGTCC--GTTTGGAAACCACTCTCTGCTTTGAGGACAGGCGCGGAGCTTCCCTGGGAGGA-GGAGGCTCTGAAGGAAGAGGGGCAGACG-GAGATCTCTGGCCAGCCGCACCTCCGGTCCAGGCCTCCCTGTGTCCACATCATGTCTCCCGGCTTTTCACAACAGTGACCTTGACAGCGCCCAGATTCCGTGGCTTCCATCCAGTCCTCT-CTTCCCCTGCGTGGCCGAGAGGGTG-CAGCGCTGGTGGCTTCAGGACGTGGCTGTGAGCGCGGGTCTGGGGCCAAGAGCAGAGGA-CAGAAGA--C-CCGCCAAGCCACCACCGGTCCTGCGACAGCTTAACCGGCTCCCGGCG------AGGTCAGG--CCCCAGATTCGGGTTTGCCCAGCAGGCGCTCGGCATCCATGCTCCCTCTC-CACCTCCCTGCCTCTC-TAAGGAGGACCTGGCCCATTAGGAAGCCCC-GG-GCGTTCTGTGGACTGGGTGGTCAAAAATTGTGTGTGGAGGAGGGAGTCAATTGAGATGAGACGTGAAAAACGGGGGACCTGGGGACCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31132354 851 + 172585720 TCCCAGCGGTGGCCCCGGGCTCAGGGAACCAGGGCTGCTTCTCTTCG------A----GGCTCGTCGCC-----TGAGAAAC---CCTTCGC------TCCGAATCCGGGCTGGCCTCTCCGGGAAGCCTTGAAACTCAAC--TGCCGGGTGGGCCAGGAAGGCTGTCCAAGTTGGGCAGCGCCAGCCGGCCGGGACCTTCCTCAGAGCCGAGCTGCTCGCCGCCCTCGAGGCCCAGCTGAGCCTGGAGG--AGAGACCGGGTCCGCGCGGGT-GGGG-CCCTCGGTGCCTGGCGACCCCATGGGCACCCACCCTCCAGCTTGG------GGTGGGATAACCCAATTGCATGCTGGGGGGTGGTCT--GTTTGGAAACCACTCTCTGCTTTGATGAGGCGCGCAGAGGTTCCCTGGGAGGA-GGAGGCTCTGAAGGAAGAGGGGCAGAGGCAAGGCCTCTCGCCAGCCGCGCCTCTGGTCCAGACCTCCCTGTGTCCACATCAGGTCTCCCGGCTTTTCACAGTGCTGACCTTGACAGCGCCCAAATACCGCAGCTTCCATCCAGTCCTCT-CTTGCCCTGCGTGGCCGAGAGGGTG-CAGCACTGGTGACTTCAGGATGTGGCTGTGAGCGCGGGTCTGGGGCCAAAAGCAGAGGA-CAGGAGAAGACCTGCCAGGCCACCACTGGTCCTTCGACAGCTTCACCGGCT-------------------------CCAGATTCGGGTTTGCCCAGCAGGCGTTGGGTGTCCATGCTCCCTCTC-CACCTCCCTGCCTCTC-TAAGGAGGACCTGGCCCATTTGGAAGCCCG-GG-GCCTTCTGTGGGCTGGGTGGTCAAAAAGTGTGGGTGGAGGAGGGGGTCCATTGAGATTAGACGTGAAAAACGGGGAACCTGGGGACCT
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             30424409 851 - 170955103 TCCCAGCGGTGGCCCCGGGCTCAGGGAACCAGGGCTGCTTCTCTTCG------A----GGCTCGTCGCC-----TGAGAAAC---CCTTCGC------TCCGAATCCGGGCTGGCCTCTCCGGGAAGCCTTGAAACTCAGC--TCCCGGGTGGGCCAGGAAGGCTGTCCAAGTTGGGCAGCGCCAGCCGGCCGGGACCTTCCTCAGAGCCGAGCTGCTCGCCGCCCTCGAGGCCCAGCTGAGCCTGGAGG--AGAGACCGGGTCCGCGCGGGT-GGGG-CCCTTGGTGCCTGGCGACCCCATGGGCACCCACCCTCCAGCTTGG------GGCGGGATAACCCAATTGCATGCTGGGGGGTGGTCT--GTTTGGAAACCACTCTCTGCTTTGATGAGGCGCGCAGAGGTTCCCTGGGAGGA-GGAGGCTCTGAAGGAAGAGGGGCAGAGGCAAGGCCTCTCGCCAGCCGCGCCTCTGGTCCAGACCTCCCTGTGTCCACATCAGGTCTCCCGGCTTTTCACAGTGCTGACCTTGACAGCGCCCAAATACCGCAGCTTCCATCCAGTCCTCT-CTTGCCCTGCGTGGCCGAGAGGGTG-CAGCACTGGTGACTTCAGGATGTGGCTGTGAGCGCGGGTCTGGGGCCAAGAGCAGAGGA-CAGGAGAAGACCTGCCAGGCCACCACTGGTCCTTCGACAGCTTCACCGGCT-------------------------CCAGATTCGGGTTTGCCCAGCAGGCGTTGGGTGTCCATGCTCCCTCTC-CACCTCCCTGCCTCTC-TAAGGAGGACCTGGCCCATTTGGAAGCCCG-GG-GCCTTCTGTGGGCTGGGTGGTCAAAAAGTGTGGGTGGAGGAGGGGGTCCATTGAGATTAGACGTGAAAAACGGGGAACCTGGGGACCT
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     679078 851 +   1495729 TCCCAGCGGTGGCCCCGGGCTCAGGGAACCAGGGCTGCTTCTCTTCG------A----GGCTCGTCGCC-----TGAGAAAC---CCTTCGC------TCCGAATCCGGGCTGGCCTCTCCGGGAAGCCTTGAAACTCAGC--TCCCGGGTGGGCCAGGAAGGCTGTCCAAGTTGGGCAGCGCCAGCCGGCCGGGACCTTCCTCAGAGCCGAGCTGCTCGCCGCCCTCGAGGCCCAGCTGAGCCTGGAGG--AGAGACCGGGTCCGCGCGGGT-GGGG-CCCTTGGTGCCTGGCGACCCCATGGGCACCCACCCTCCAGCTTGG------GGCGGGATAACCCAATTGCATGCTGGGGGGTGGTCT--GTTTGGAAACCACTCTCTGCTTTGATGAGGCGCGCAGAGGTTCCCTGGGAGGA-GGAGGCTCTGAAGGAAGAGGGGCAGAGGCAAGGCCTCTCGCCAGCCGCGCCTCTGGTCCAGACCTCCCTGTGTCCACATCAGGTCTCCCGGCTTTTCACAATGCTGACCTTGACAGCGCCCAAATACCGCAGCTTCCATCCAGTCCTCT-CTTGCCCTGCGTGGCCGAGAGGGTG-CAGCACTGGTGACTTCAGGATGTGGCTGTGAGCGCGGGTCTGGGGCCAAGAGCAGAGGA-CAGGAGAAGACCTGCCAGGCCACCACTGGTCCTTCGACAGCTTCACCGGCT-------------------------CCAGATTCGGGTTTGCCCAGCAGGAGTTGGGTGTCCATGCTCCCTCTC-CACCTCCCTGCCTCTC-TAAGGAGGACCTGGCCCATTTGGAAGCCCG-GG-GCCTTCTGTGGGCTGGGTGGTCAAAAAGTGTGGGTGGAGGAGGGGGTCCATTGAGATTAGACGTGAAAAACGGGGAACCTGGGGACCT
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     780677 851 -    863181 TCCCAGCAGTGGCCCCGGGCTCAGGGAACCAGGGCTGCTTCTCTTCG------A----GGCTCGTCGCC-----TGAGAAAC---CCTTCGC------TCCGAATCCGGGCTGGCCTCTCCGGGAAGCCTTGAAACTCAGC--TCCCGGGTGGGCCAGGAAGGCTGTCCAAGTTGGGCAGCGCCAGCCGGCCGGGACCTTCCTCAGAGCCGAGCTGCTCGCCGCCCTCGAGGCCCACCTGAGCCTGGAGG--AGAGACCGAGTCCGCGCGGGT-GGGG-CCCTTGGTGCCTGGCGACCCCATGGGCACCCACCCTCCAGCTTGG------GGCGGGATAACCCAATTGCATGCTGGGGGGTGGTCT--GTTTGGAAACCACTCTCTGCTTTGATGAGGCGCGCAGAGGTTCCCTGGGAGGA-GGAGGCTCTGAAGGAAGAGGCGCAGAGGCAAGGCCTCTCGCCAGCCGCGCCTCCGGTCCAGACCTCCCTGTGTCCACATCAGGTCTCCCGGCTTTTCACAATGCTGACCTTGACAGCGCCCAAATACCGCAGCTTCCATCCAGTCCTCT-CTTGCCCTGCGTGGCCGAGAGGGTG-CAGCGCTGGTGACTTCAGGATGTGGCTGTGAGCGCGGGTCTGGGGCCAAGAGCAGAGGA-CAGGAGAAGACCTGCCAGGCCACCACTGGTCCTTCGACAGCTTCACCGGCT-------------------------CCAGATTCGGGTTTGCCCAGCAGGCGTTGGGTGTCCATGCTCCCTCTT-CACCTACCTGCCTCTC-TAAGGAGGACCTAGCCCATTTGGAAGCCCG-GG-GCCTTCTGTGGGCTGGGTGGTCAAAAAGTGTGTGTGGAGGAGGGGGTCCATTGAGATTAGACGTGAAAAACGGGGAACCTGGGGACCT
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29918338 856 -  71996105 TCCCAGCGGTGGCCCCGGGCTCAGGGAACCGGGGCTGCTTCTCTCCG------A----GGCTCGTCGCC-----TGAGAAAT---CCTTCGCTCCGAATCCGAATCCGGGCTGGCCTCTCCGGGAAGCCTTGAAACTCAAC--TCACGGGTGGGCCAGGAAGGCTGTCCAAGTTGGGCAGCGCCGGCCGGCCGGGGCCTCCCTCAGAGCCGAGCTGCTCGCCGCCCTCGAGGCCCAGCTGAGCCTGGAGG--AGAGACTGGGTCCGCGCGGGT-GGGG-CCCTTGGTGCCGGGCGACCCCATGAGCACCCACCCTCCAGCCTGG------GGCGGGATGGCTCAATTGGATGCTGGGGGGTGATCT--GTTTGGAAACCACTCTCCGCTTTGAGGAGACGCGCAGAGGTTCCCTGGGAGGA-GGAGGCTCTGAAGGAAGAGGGGCAGAGGTGAGGCCTCTCGCCAGCCGCGCCTCCAGTCCAGGCCTCCCTGTGTCCACATCAGGTCTCCCGGCTTTTCACAACACTGACCTTGACAGCGCCCAAATTCCGCGGCTTCCATCCAGTGCTCT-CTTGCCCTGCGTGGCCGAGAGGGTG-CAGCGCTGGTGACTTCAGGATGTGGCTGTGAGCGCGGGTCTGGGGCCAAGAGCAGAGGA-CAGGAGAAGACCTGCCAGGCCACCACTGGTCCTTCGACAGCTTCACCGGCT-------------------------CCAGATTCGGGTTTGCCCAGCAGGCGTTCGGTGTCCATGCTCCCTCTC-CACCTCCCTGCCTCTC-TAAGGAGGACCTGGCCCATTTGGAAG-CTG-GG-GCGTTCTGTGGGCTGGGTGGTCAAAAAGTGTGTGTGGAGGAGGGGGTGAATTGAGATCAGAGGTGAAAAACGGGGAACCTGGGGACCG
i chlSab2.chr17            C 0 I 61424
s manLeu1.NW_012106264v1       1983 864 +    779361 GCCCAGCAGTGGCCCCGGGCTCAGGGAACCAGGGCTGCTTCTCTCCGAGGTTCA----GGTTCGCGGCC-----TTAGAAAC---CCTCCGC------TCCGAATCTGGGCTGGCCTATCCGAGAAGCCTTGAAACTCAAC--TCCCGGGTGGGCCAGGAAGGCTGCCCGAGTTGGGCAGCGCCGGCCGAC----GCCTTCCTCAGAGACGAGCTGCTCGCTGCCCTCGAGGCCCAGCCGAGCCTGGAGG--AGAGACCGGGTCCGCTCAGGT-GGGG-CCCTTGGTGCCTGGCGACCCCATGAGCACCCACCCTCCAGCCTGG------GGCGGGATGGCCCAATCAGGCGCAGTGGG--GGTCC--GTTTGGAAACCACTCTCTGCTTTGAGGACACACTCGGGGCTTCCCTGGGAGAA-GGAGGC----AGTGAAGAGCGGCAGACACGAGGCCTCTGGCCAGCCGCGCCTCGGGTCCAGGCCTCCCTGTGTCCACATCTGGTCTCCCGGCTTTTCACAACAGTGACCTTGACAGCGCCCAGAGTCCGCTGCTTCCGTCCAGTCCGCT-CTTCCCCTGCGTGGCCGAGAGGGCG-CAGCACTGGTGGCTTCAGGAGGTGGCTGTGAGCGCGGGGCTGGGGCCGAGAGCATAGGA-CCAGAGAGAAGTCACCAAGCCACCACTGGCCCAGGGTCACCGTCACCGGCTGCCGGCT------AGGTCAAG--CCCCAGATTCGGGTTTGCCCAGCAGGCGCTGGGCGTCCATGCTCCCTCTC-CACCTCCCTGCCTCTC-TAAGGAGAACCTAGCCCATTAGAAAGCCCA-GG-GCATTCTGTGGACTGGTTGGTCAAAAATGGTGTGTGGGGGAGGGGGTCAATTGAGATCAGACGTGAAAAACGGGGAACCTGGGGACCA
i manLeu1.NW_012106264v1   I 327 I 1
s colAng1.NW_012115577v1     587642 824 -   1829203 TCCCAGCGGTGGCCCCGGATTCAGGGAACCAGGGCTGCTTCTCTCCG------A----GGCTCGTCGCC-----TGAGAAAC---CCTT-GC------TCCGAATCCGGGCTGGCCTCTCCGGGAAGCCTTGAAACTCAAC--TCCCGGGTGGGCCAGGAAGGCTGTCCAAGTTGGGCAGCGCTG---GGCCGGGGCCTTCCTCAGAGCCGAACTGCTCGCCGCCCTCGAGGCCCAGCCGAGACTGGAGG--AGAGACCGGGTCCGCGCGGGTGGGGG-CCCTTGGTGCCTGGCGACCCCATGAGCACCCACCCTCCAGCTTGG------GGCGGGATAGCCCAACTGGATGCTGGGGGGTG------GTTTGGAAACCACTCTCTGCTTTGAGGAGGCGCGCCGATGTTCCCTGGGAGGA-GGAGGCTCTGAAGGAAGAGGGGCAGAG-------------------GTGCCTCCGGTCCAGGCCTCCCTGTGTCCACATCAGGTCTCCCGGCTTTTCACAACACTGACCTTGACAGCGCCCAAATTCCGCGGCTTCCATCCAGTCCTCT-CTTGCCCTGCGTGGCCGAGAGGGTG-CAGTGCTGGTGACTTCAGGATGTGGCTGTGAGCGCGGGTCTGGGGCCAAGAGCAGAGGA-CAGGAGAAGACCTGCCAGGCCACCACTGGTCCTTCGACAGCTTCACCGGCT-------------------------CCAGATTCGGGTTTGCCCAGCAGGCGTTCGGTGTCCACGCTCCCTCTC-CACCTCCCTGCCTCTC-TAAGGAGGACCTGGGCCATTTGGAAGCCCA-GG-GCGTTCTGTGGGCTGGGTGGTCAAAAATTGTGTGTGGAGGA-GGGGTCAATTGAGATTAGACGTGAAAAACGGGGAACCTGGGGACCG
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30791579 862 + 171630274 GCCCAGCGGTGGCCCCGGGCTCAGGGAACCGGGGCTGCTTCTCTCCG------G----GGTTCGCGGCC-----TGAGAAAC---CCTCCGC------TCCGAATCCCCGCCGGCCTCTCCGGGAAGCCTTGAAACTCAGC--TTCAGGGTGGGCCAGGAAGGCTGTCCGAGTTGGGCAGCCCC----GGCCAGGGCCTCGCCCGAAGCTGAGCTGCT-GCCGCCCTCGAGGCCCAGCCGAGCCTGGAGG--AGAGACCGGGTCCGCGTGGGT-GCGG-CCCTTGGTGCCTGGCGAACCCAGGAGCCCCCACCCTCCAGTTCCG------GGCGGGATGGCCCAATCGGGCGCTGTGGG--GGTCC--GTTTGGAAACCACTCTCTGCTTTGAGGACACGCGCTGAGCTTCCCTGGGAGGA-GGAGGCTGTGAAGGAAGAGGGGCAGACTCGAGGCCTCTGGCCAGCCGCGCGTCCGGCACAGGCCTCCCTGTGTCCACAGCTAGTCCTCCAGCTTTTCACAACAGTGACCTTAACAGCACCCAGAGTCTGCGGCTTCTATCCAGTCTGCTCCTTCCTCTGAGTGGCCAAGAGGGAG-CAGTGCTGGTGGCCTTATTTAGTGGCTGTGAGCGTAGGGCTGGGACCGAGAGCGGAGGACCCGGAAAGAAGCCGCCAAGCCACCACCGGCCCTGGGGCACCGTCAGCGTCTCCCGGCG------ACCTCAGA--CCACAGATTCGGGTTTGCCCAGCAGCTGCTCCGGGTTCAGGCTTCCTCTC-CACCTCCCCGCCTCCC-TCAGGAGGACCTGGCCCATTAGGAAGCCCCGGG-GCGTATTCTGTACTGGGTGGTCAAAAATGGTGTGTGGGGGAGG--GTCAATTGAGATTAGACGTGAATAACGGGGAACTTGGGGCCGC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1223079 830 -   1771730 GCCCAGCGGAGGTCCCGGGCTCCGGGAACCGGGGCTGCTTCTCTCCG------G----GGCTCGCGGCC-----TGAGGAAC---CCTCCGC------TCCGAATCCGGGCTGGCCTCTCCGGGAAGCCTTGAAACTCAGC--TCCCGGGTGGGCCAGGAAGGCTGTCCGAGTTGGGCAGCGCC----GGCCGGGGCCTCCCTTAGAGCCGAACTGCT-GCCGCCCTCGAGGCCCAGCCTAGCCTCAAGG--AGAGACAGGGTCCGCGCGGGT-GCGG-CCCTTGGTGCCTGGCGACCGCAGGAGCC---------------------------------CCCAATCGGG---GGTGGA--GGTCC--GTCTGGAAACCACTCTCTGCTTTGAGGACACGCGCGGAGCTTCCCTGGGAGGA-GGAGGCTGTGAAGTAAGAGGGGCAGACACCAGGCCTCTGGCCAGCCGCGCCTCGGGCCCAGGCCTCCCTGTGTCCAAGTCTAGTCCTCCCGCTTTTCACAAAGGTGAGATTGACAGCACCCAGAGTCTGCGGCTTCTGTCCAGTCCGCTCCTTCCTCTGCGTGGCCAAGAGGGCG-CAGTGCTGGTGTCTTTAGTGAGTGGCTGTGAGCGCAGGGCTGGGGCCGAGAGCGGAGGA-CAGGAGAGGAGCCGCCAAGCCACCACTGGCCCTGGGGCACGGTCGCCGTCTCCCGGCG------AGGTCAGG--CCGCAGATTCGGGTTTGCCCAGCAGCTGCTCCGCGTTCAGGCTTCCTCTC-CACCTGCCTGCCTCCC-TCAGGAGGACCTGGCCCATTAGGAAGCCCC-AG-GCGTTTTGTGGACTGGGTGGTCAAAAATGGTGTGTGGGGGAGG--GTCAATTGAGATTAGACGTGAATAACGGGGAGCCTGGGGCCGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     432083 861 -    486031 GCCCAGCGGTGGCTCCGGGCTCCGGGAACCGGGGCTGCTTCTCTCCG------G----GGTTCGCGACC-----TGAGGAACCTTCCTCCGC------TCCGAATCCGGGCTGGCCTCTCCGGGAAGCCTTGAAACTCAGC--TCCCTGATGGGCCAGGAAGGCTGTCCGAGTTGGGCAGCGCC----GCCCGGGGCTTCCCTCAGAGCCGAGTGTTC-GCCACCCTTGAGGCGCAGCCGAGCCTGCAGG--AGAGACCGGGTCCGCGCAGGT-GCGG-CCCGTGGTGCCTGGAGACCCCACGAGCCCCCACCCTCCAGCTCGG------GGCGTGATGGCCCAATTGGC-GCTGTGGG--GATCT--GTTTCGAAACCACTCTCTGCTTTGAGGACACGTGCGGAGC-TCTCTGGGAAGA-GGAGGCTGTGAAGGAAGAGGGGCTGACTCGAGGCCTCTGGCCAGCTGCGCCTCCGGCCCAGGCCTCCCTGTGTCCACGACTAGTCCTCCGGCTTTTCACAACAGTGACCTCGACAGCACCCAGAGTCTGCGGCTTCTGTCCAGTCCGCTCCTTCCCCTGCGTGGCCAAGAGGGCG-CACTGCTGGTGTCTTTAGTGAGTGGCTGTGAGCGCGGGGCTGGGGCCGAGAGCGGAGGA-CGAGAGAGGAGCCGCCAAGCCACCACCGGCCCTGGGGCACCGTCACCGTCTCCCGGCG------AGATCAGG--CCGCAGATTCGGGTTTGCCCAGCAGCTGCTCCGCGTTCAGGCTTCCTCTC-CACCTCCCTGCCTCCC-TCAGGAGGACCTGGCCCATTAGGAAGCCCG-GG-GCGTTTTGTGGACTGGGTGGTCAAAAATGGTGTGTGGGGGAGG--GTCAGTTGAGATTAGACCTGAATAACGAGGAACCTGGGGCCTC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           596074 814 +  18854210 -CCCTGTCTTTTCCCCTGGCACT-----------CTAATTTTTTCAG------ATCTGGGTTGGCCACCCCAAACAAGAAAC---CCTGCCC------CACCAACCT---CCACCCCTATGATGAAGCTGTGAAACTCAGTGAGACCAGGTTGTAAAGAAAGGCATCCCCCCTTAGGTACGACTT---GATGGGTTTCTCCCCCAGAACCAGCCTGCT-GC--CTGTGGAAGCAGAGGAAAGCCTGAAGACTGGAGGCTG------------T-GGGG-CCCTGGCTGCCTGGCAACCCCAC-CTCCCCCAGCCTCTAGCTTGGGGGGAAGGAGGAATGGGTGAACTGGGTGATTGGA---GGACCAGGTTTGGAAAC--CTCTCTG-TCTGAAGATGGGCAAGGAGCTTCCCTGGGAGACTGAATACTGTAAAGGACAGGTGGC-----------CTCTGGACAGCCGC-------------ACTTCCCACTTTCTATATCTGGTCTCTTGGCTTTCCAAACCAGTGAACTTGAAAGCACATGAA-TCCACTACTTCTGTCCACCATTCC-CTCCCCTTGTGGTGACCTCAGCATGACAGCGCTGGTGACTTCAGGATGTGAAAGTGAGTGTGGGGCTAGGGCCTGCAGCAGCTAA-CAAGAAAGGAGAGGCTGGCCCACTGCCAGCCC-----CAGGATCACTGGCTCCCAGCGG-----AAGTTAGGCTCCCCAAATTCAGAT-------GGGGGGGCTCC-CTTCCACGTTTGCGCTCTCACCTCCCAGCCTCTCTCAAGTAGGACCTGGCTCACTGGGAAGCCCA-GGTACACACTTTGAAC--GGTGGTTCAAAAAGG-GTGTGAGGGAGAGAAT--AGTCAGATCAGACCTGAAAAACAGGGAACCTCAGGACTA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T

a score=4994622.000000
s hg38.chr6_GL000254v2_alt  1796051 595 +   4827813 CAGGTTGGGGCCCAGGAGAGGACC-GAAGCTTCCA------------TCCAA-------GACTAAGTGAGGAACACTGAGGCAAGAGGAAGGAAGATTGAGTCGCAGTTGACTTGTGGATTTTATCGGTTTTAGTCCCTGTGTGACCGCCAGAAGTCTGCAGCTTTATCCTTGATGAGTTCTGAAGGCCCCTGAGGAGAGCTGAGCCCAAGAGACTTTTTAATTCCACGGAGGTACTTCGCCTGAGGCAGGTCTC---TTCTGTGCCCAGGGAAGGAAGGCTGGGAGTGAGGGTATCTGAAAA------------------TATTCACA-TGAGAAA----AGGTCAAGTCCATTTTTGCTATCCTGTACTGAACACAG---ATCAATTAACTGGTCCCA---GGATTGATAGCAACAGGCCTATAACTGGTCTCCTGGTTCCTATCCAGCCCTT-CCCCCATAAAGTCAGAATCCTGTCTTCTTGGAACAGTG--AATCCCCAGCAGAGGACC-----------------------------TCAGCCTGGGCTGCCTGGAACCTGCTACCCTGCCCA--GGAGCTGTCAACACCTGGAGCGCAGTGCAGGAAGAATGCAGGGGCGCTTGGTGG------GGAGGTGAGTGAGTGCAGA-GGGTCTCCGGGAACTCCTTGGGCCTTT
s panTro5.chr6             30642227 595 + 175400573 CAGGTTGGGGCCCAGGAGAGGACC-GAAGCTTCCA------------TCCAA-------GACTAAGTGAGGAACACTGCGGCAAGAGGAAGGAAGATTGAGTCGCAATTGACTTGTGGATTTTATCGGTTTTAGTCCCTGTGTGACCGCCAGAAGTCTGCACCTTTATCCTTGGTGAGTTCTGAAGGCCCCTGAGGAGAGCTGAGCCCAAGATACTTTTTAATTCCACGGAGGTACTTCGCCTGAGGCAGGTCTC---CTCTGTGCCCAGGGAAGGAAGGCTGGGAGTGAGGGTATCTGAAAA------------------TATTCACA-TGAGAAA----AGGTCAAGTCCGTTTTTGCTATCCTGTACTGAACACAG---ATCAATTAACTGGTCCCA---GGATTGATAGCAACAGGCCTATAACTGGTCTCCTGGTTCCTATCCAGCCCTT-CCCCCATAAAGTCAGAGTCCTGTCTTCTTGGAACAGTG--AATCCCCAGCAGAGGACC-----------------------------TCAGCCTGGGCTGCCTGGAACCTGCTACCCTGCCCA--GGAGCTGTCAACACCTGGAGTGCAGTGCAGGAAGAATGCAGGGGCGCTTGGTGG------GGAGGTGAGTGAGTGCAGA-GGGTTTCCGGGAACTCCTTGGGCCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31066189 595 + 173848474 CAGGTTGGGGCCCAGGAGAGGACC-GAAGCTTCCA------------TCCAA-------GACTAAGTGAGGAACACTGCGGCAAGAGGAAGGAAGATTGAGTCGCAATTGACTTGTGGATTTTATCGGTTTTAGTCCCTGTGTGACCGCCAGAAGTCTGCACATTTATCCTTGGTGAGTTCTGAAGGCCCCTGAGGAGAGCTGAGCCCAAGATACTTTTTAATTCCACGGAGGTACTTCGCCTGAGGCAGGTCTC---CTCTGTGCCCAGGGAAGGAAGGCTGGGAGTGAGGGTATCTGAAAA------------------TATTCACA-TAAGAAA----AGGTCAAGTCCATTTTTGCTATCCTGTACTGAACACAG---ATCAATTAACTGGTCCCA---GGATTGATAGCAACAGGCCTATAACTGGTCTCCTGGTTCCTATCCAGCCCTT-CCCCCATAAAGTCAGAGTCCTGTCTTCTTGGAACAGTG--AATCCCCAGCAGAGGACC-----------------------------TCAGCCTGGGCTGCCTGGAACCTGCTACCCTGCCCA--GGAGCTGTCAACACCTGGAGTGCAGTGCAGGAAGAATGCAGGGGCGCTTGGTGG------GGAGGTGAGTGAGTGCAGA-GGGTTTCCGGGAACTCCTTGGGCCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     571530 595 +   2037526 CAGGTTGGGGCCCAGGAGAGGACC-GAAGCTTCCA------------TCCAA-------GACTAAGTGAGGAACACTGCGGCAAGAGGAAGGAAGATTGAGTCGCAATTGACTTGTGGATTTTATCGGTTTTAGTCCCTGTGTGACCGCCAGAAGTCTGCAGCTTTATCCTTCGTGAGTTCTGAAGGCCCCTGAGGAGAGCTGAGCCCAAGATACTTTTTAATTCCACGGAGGTACTTCGCCTGAGGCAGGTCTC---CTCTGTGCCCAGGGAAGGAAGGCTGGGAGTGAGGGTATCTGAAAA------------------TATTCACA-TGAGAAA----AGGTCAAGTCCATTTTTGCTATCCTGTACTGAACACAG---ATCAATTAACTGGTCCCA---GGATTGATAGCAACAGGCCTATAACTGGTCTCCTGGTTCCTATCCAGCCCTT-CCCCCATAAAGTCAGAATCCTGTCTTCTTGGAACAGTG--AATCCCCAGCAGAGGACC-----------------------------TCAGCCTGGGCTGCCTGGAACCTGCTACCCTGCCCA--GGAGCTGTCAACACCTGGAGTGCAGTGCAGGAAGAATGCAGGGGCGCTTGGTGG------GGAGGTGAGTGAGTGCAGA-GGGTTTCCGGGAACTCCTTGGGCCTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75228854 614 + 122973662 AAGGTTGGGGCCCAGGAGAGGACC-GAAGTTTCCA------------TCCAA-------GACTAAGCGAGGAACACTGCGGCAAGAGGAAGAAAGATTGATTCGCAATTGACTTGTGGACTTTATCGGTTTCAGTCCCTGTGTGACCACCAGAAGTCTGCAGCTTTATGCTTGGTGAGTTCTGAAGGCCCCTGTGGAGAGCTGAGCCCAAGACACTTTTTATTTCCACGGAGGTACTTCGCCTGAGGCAAGTCTC---CCCTGTGCCCAGGGAAGGAAGGCTGGGCATGAGGGTGTCTGAAAA------------------TATTTACA-CGAGAAA----AGGTCAAATCCATTTTTGCTATCCTGTACTGAACACAG---ATCAATTAACTGGTACCA---GGAGTGATGGCAACAGGCCTATAACTGGTCTCCTAGTTCCTATCCAGCCCTT-CCCCCATAAAGTCAGAATCCTGTCCTCTTGGAGCAGTG--AATCCCCAGCAGAGGACCTCA----------GCTCCCGAGCTCG-ATTCAGCCTGGGCTGCCTGGAACCGGCTACCCTGCCCA--GGAGCTGTCAACACCTGGAGCGCAGTGCAGGAAGAATGCAGGGGCGCTTGGCGG------GGAGGTGAGTGAGTGCAGATGGGGTTCCTGGAACTCCTTGAGCCCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31133206 613 + 172585720 AGGGTTGGGGCCCAGGAGGGGACC-GAAGCTTCCA------------GCCAA-------GACTAAGTGAGGAACACTGCGGCAAGAGGAGGAAAGATTGATTCACAATTGACTTGTAGATGTGATCGGTTTTAGTCCCTGCGTGACCGCCAGAAGTCTGCAGCTTTATTCTTGGTGAGTTCTGAAGGCCCCTGGGGAGAGCTGAGCCCAAGATACTTTTTAATTCTGCAAAGGTACTTCACATGAGGCAGGTCTC---CTCTATGCCCAGGGAAGGAAGGCTGGGTGAGAGGGTGTCTGAAAA------------------AATTAACA-GGAGAAA----AGGTCAAGTCCATTTTTGATATCCTGTACTGAACACAG---ATCAATTAAGTGGTCCCA---GGATTGATGGCAACAGGCCTATAACTGGTCTCCTAGTTCCTATCCAGCCCTT-CCCCCATAAACTCAGAACCCTGTCCTCTTGGAACAGTG--AATCCCCAGCAGAGGACCTCA----------GCTCCCAAGCTCC-ATTCAGCCTGGGCTGCCTGGAACCCGCTACCCTGCCCA--GGAGCTGTTAACACCTGGAGCTCGGTGCAGGAAGAATGCAGGGGCGCTTGGTGG------GGAGGTGAGTGAGTGCAGA-GGGGTTCCAGGAACTCCTTGAGCCCTT
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30425261 613 - 170955103 AGGGTTGGGGCCCAGGAGGGGACC-GAAGCTTCCA------------GCCAA-------GACTAAGTGAGGAACACTGCGGCAAGAGGAGGAAAGATTGATTCACAATTGACTTGTAGATGTGATGGGTTTTAGTCCCTGCGTGACCGCCAGAAGTCTGCAGCTTTATTCTTGGTGAGTTCTGAAGGCCCCTGGGGAGAGCTGAGCCCAAGATACTTTTTAATTCTGCAAAGGTACTTCACATGAGGCAGGTCTC---CTCTATGCCCAGGGAAGGAAGGCTGGGTGAGAGGGTGTCTGAAAA------------------AATTAACA-GGAGAAA----AGGTCAAGTCCATTTTTGATATCCTGTACTGAACACAG---ATCAATTAAGTGGTCCCA---GGATTGATGGCAACAGGCCTATAACTGGTCTCCTAGTTCCTATCCAGCCCTT-CCCCCATAAACTCAGAACCCTGTCCTCTTGGAACAGTG--AATCCCCAGCAGAGGACCTCA----------GCTCCCAAGCTCC-ATTCAGCCTGGGCTGCCTGGAACCCGCTACCCTGCCCA--GGAGCTGTTAACACCTGGAGCTCGGTGCAGGAAGAATGCAGGGGCGCTTGGTGG------GGAGGTGAGTGAGTGCAGA-GGGGTTCCAGGAACTCCTTGAGCCCTT
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     679930 613 +   1495729 AGGGTTGGGGCCCAGGAGGGGACC-GAAGCTTCCA------------GCCAA-------GACTAAGTGAGGAACACTGCGGCAAGAGGAGGAAAGATTGATTCACAATTGACTTGTAGATGTGATGGGTTTTAGTCCCTGCGTGACCGCCAGAAGTCTGCAGCTTTATTCTTGGTGAGTTCTGAAGGCCCCTGGGGAGAGCTGAGCCCAAGATACTTTTTAATTCTGCAAAGGTACTTCACATGAGGCAGGTCTC---CTCTATGCCCAGGGAAGGAAGGCTGGGTGAGAGGGTGTCTGAAAA------------------AATTAACA-GGAGAAA----AGGTCAAGTCCATTTTTGATATCCTGTACTGAACACAG---ATCAATTAAGTGGTCCCA---GGATTGATGGCAACAGGCCTATAACTGGTCTCCTAGTTCCTATCCAGCCCTT-CCCCCATAAACTCAGAACCCTGTCCTCTTGGAACAGTG--AATCCCCAGCAGAGGACCTCA----------GCTCCCAAGCTCC-ATTCAGCCTGGGCTGCCTGGAACCCGCTACCCTGCCCA--GGAGCTGTTAACACCTGGAGCTCGGTGCAGGAAGAATGCAGGGGCGCTTGGTGG------GGAGGTGAGTGAGTGCAGA-GGGGTTCCAGGAACTCCTTGAGCCCTT
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     781529 613 -    863181 AGGGTTGGGGCCCAGGAGGGGACC-GAAGCTTCCA------------TCCAA-------GACTAAGTGAGGAACACTGCGGCAAGAGGAGGAAAGATTGATTCACAATTGACTTGTAGATGTGATCGGTTTTAGTCCCTGTGTGACCTCCAGAAGTCTGCAGCTTTATCCTTGGTGAGTTCTGAAGGCCCCTGGGGAGAGCTGAGCCCAAGATACTTTTTAATTCTGCAAAGGTACTTCACATGAGGCAGGTCTC---CTCTATGCCCAGGGAAGGAAGGCTGGGTGAGAGGGTGTCTGAAAA------------------AATTAACA-GGAGAAA----AGGTCAAGTCCATTTTTGATACCCTGTACTGAACACAG---ATCAATTAACTGGTCCCA---GGATTGATGGCAAGAGGCCTATAACTGGTCTCCTAGTTCCTATCCAGTCCTT-CCCCCATAAACTCAGAACCCTGTCCTGTTGGAACAGTG--AATCCCCAGCAGAGGACCTCA----------GCTCCCAAGGTTC-ATTCAGCCTGGGCTGCCTGGAACCTGCTACCCTGCCCA--GGAGCTGTTAACACCTGGAGCTCGGTGCAGGAAGAATGCAGGGGCGCTTGGTGG------GGAGGTGAGTGAGTGCAGA-GGGGTTCTGGGAACTCCTTGTGCCCTT
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29980618 612 -  71996105 AGGGTTGGGGCCCAGGAGGGGACC-GAAGCTTCCA------------TCCAA-------GACTAAGTGAGGAACACTGCGGCAAGAGGAGGAAAGATTGATTCACAATTGACTTGTAGATGTGATCGGTTTTAGTCCCTGTGTGACCGCCAGAAGTCTGCAGCTTTATCCTTGGTGAGTTCTGAAGGACCCTGGGGAGAGCTGAGCCCAAGATACTTTTTAATTCTGCAAAGGTACTTCGCATGAGGCAGGTCTC---CTCTATGCCCAGGGAAGGAAGGCTGGGTGAGAGGGTGTCTGAAAA------------------AATTAACA-GGAGAAA----AGGTCAAGTCCATTTTTGATATCCTGTACTGAACACAG---ATCAATTAACTGGTCCCA---GGATTGATGGCAACAGGCCTATAACTGGTCTCCTAGTTCCTATCCAGTCCTT-CCCCCATAAACTCAGAACCCTGTCCTCTTGGAACAGTG--AATCCCCAGCAGAGGACCTCA----------GCTCCCAAGGTCC-ATTCAGCCTGGGCTGCCTGGAACCCGCTACCCTGCCCA--GGAGCTGTTAACACCTGGAGCTCGGTGCAGGAAGAATGCAGGGG-GCTTGGTGG------GGAGGTGAGTGAGTGCAGA-GGGGTTCCGGGAACTCCTTTGGCCCTT
i chlSab2.chr17            I 61424 C 0
s manLeu1.NW_012106264v1       2848 605 +    779361 AGGGTTGGGGCCCAGGAGGGGACC-GAAGCTTCTA------------TTTAAGACAGGTGACTAAGTGAGGGGCACTGCCGCAACAGGAAGAAAGATTGATTTGCAATTGATTTGCAGGCGTGATCAGTTTTAGTCCCTATTTGACAACCAGAAGTCTGCAGCTCTATCCTTGGTGAGTTCTGAAGGCCTCTGGGGACAGCTGAGCCCAAAAGACTTTTTAATTCCACAGAGA-ACTTCCCCTGAGGCAGGTCTC---CTCTGTGCCCAGGGAAGGAAGGCTGGGCGTGATGGTTTCTGAAAA------------------AAGTTACACGGAGAAA----AGGCCAAGTTCATTTGTGCTACCCTGAACTGAACACAG---ATCAATTAACTGGTCT------------------CAGGCCTATAACTGATCTCCTAGTTCCTATCCAGTCCTT-CCCCCATAAACTCAGAACCGTGTCCTCTTGGAACAGTG--AATCCCCAGCAGAGGACCTCA----------GCTCCCAAGCTCC-ATTCAACCTGGGCTGCCTGGAACCCGTTACCCTGTCCA--GGAGCTGTTAACACCTGGAGCTCGGTGCAGGAAGAATGCAGGGGCCCTTGGTGG------GGAAGTGAGTGAGTGCTGA-GGGGTTCCGGGAACTCCTTGAGCCCTT
i manLeu1.NW_012106264v1   I 1 C 0
s colAng1.NW_012115577v1     588467 613 -   1829203 AGGGTTGGGGTCCAGGAGGGAACC-GAAGCTTCCA------------TCCAA-------GACTAAGTGAGGAACACTGCGGCAACAGGAGGAAAGACTGATTCACAATTGACTTGTAGATGTGATCGGTTTTAGTCCCTGTGTGACTGCCTGAAGTCTGCAGCTTTATCCTTGGTGAGTTCTGAAGGCCCCTGGGGAGAGCTGAGCCCAAGATACTTTTTAATTCTGCAAAGGAACTTCGCATGAGGCAGGTCTC---CTCTATGCCCAGGGAAGGAAGGCTAGGCGAGAGGGTGTCTGAAAA------------------AATTAACA-GGAGAAA----AAGTCTAGTCCATTTTTGATATCCTGTGCTGAACACAG---ATCAATTAACTGGTCCCA---GGACTGATGGCAACAGGCCTATAACTGGTCTTCTAGTTCCTATCCAGTCCTT-CCCCCATAAACTCAGAACCCTGTCCTCTTGGAACAGTG--AATCCCCAGCAGAGGACCTCA----------GCTCCCAAGGTCC-ATTCAGCCTGGGCTGGCTGGAACCCGCTAACCTGCCCA--GGAGCTGTTAACACCTGGAGCTCAGTGCAGGAAGAATGCAGGGGCGCTTGGTGG------GGAGGTGAGTGAGTGCAGA-GGGGTTCCAGGAACTCTTTTGGTCCTT
i colAng1.NW_012115577v1   I 1 C 0
s calJac3.chr4             30792441 639 + 171630274 AAGGTTGGGGCCCAGGTGGGGAGCAGAAGCTTCCCTGAGAGTCAACTTCCAAGAAAGGTGACTAAGTGAGGGGCACTATGGCAAGAGGAAGAAAGATTGATTTGCAATTGACTTGTAGCCCCGATCGGTTTTGGTCCCTACTTGACCGCCAGAGGTCTGCAGCTCTCTCCTGGGTGAGATCTGAAGGCCCCTGGGGAGAGCTGAGCCCAAGGGACTTTTTAATTCTACAGAGGAACTTCCTCTGAGGCAGATCTC---CTCTGTGCCCAGAGAAGGAAGGCTGGGCGTGATGGTGTCTGAGAA------------------AAGTTACAGAGAGAAA----AGGTCAAGTTCATTTTTGCTCTCCTGTGCTGAACTCAG---ATAAATTAACTGGTGTTAATTGGAGTGATGACAACAGGCCTATAACTGGTCTCTTGCTTCCTATCTAGCCCTTTCCCCCATAAAGGCAGAATCCTGTCCTCCTGAAACAGTG--AATCCCCAGCAGAGGACCTGA----------GCTCCCAAGATCGAATTCAGCCTGGGCTGCCTGGAACCGGCTACCCTGCCCA--GCAGCTGTCAACACCTGGAGCACAGTGCAGGAGGAAGGCAGGGGAGCTTGGTGG------GAAGGTGAGTGAgtgcaga-ccagttccagaaactgcttggaccctt
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1223909 623 -   1771730 AGGGTTGGGGCCCAGGTGGGGACCAGAAGCTTCCCAGGGAGTCAACTTCCAAGAAAGTTGACTAAGTGAGGGGCACCAGGGCAAGGGGAAGAAATATTGATTTGCAATTGACTTGTAGCCCCGATCGGTTTTGGTCCCTGCTTGACCGCCAGAGGTGTGCAGCTCTCTCTTGGGTGAGTTCTGAAGACCCCTGGGGAGAGCTGAGCCCAAAGGACTTTTTAATTCTACAGAAGAACTTCCCCTGAGGCAGATCTC---CTCTGTGCCCAGGGAAGGAAGGCTGGGCGTGATGGTGTA-GAAAA------------------AAGTTACACAGAGAAA----AGGTCAGGTTCATTTTTGCTGTCCTGTGCTGAACCCAG---ATAAATCAACTGGTGTTGACTGCAGTGATGGCAATAGGCCTATAACTGGTCTCCTGCTTCCTATCCAGCCCTT--CCCCATAAAGTCAGAATCCTGTCCTCTTGAAACAGTG--AATTCCCAGCAGAGGACCTCA----------GCTCCCAAGATCCAATTCAGTCTGGGCTGCCTGGAACCGTCTACCCTACCCA--GGAGCTGTCAACGCCTGGCGCACAGTGCAGGAGGAATGCAGGG-------------------AGGTGAGTGAGTGCAGA-CCGGTTCCAGGAACTGCTTGGACCCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     432944 632 -    486031 AGGGTTGGGGCCCAGGTGGGGACTAGAAGCTTCCCTGGGAGTCAACTTCCAAGAAAGGTGACTAA-CGAGGGGCACTACGGCAAGAGGAAGAAAGATTGATTTGCAATTGACTTGTAGCCCCGATTGGTTTTGATCCCTATTTGACCACTAGAGGTCTGCAGCTCTCTCCTGGGTGAGTTCTGAAGGCCCCTGGGGAGAGCTGAGCCCAAGGGACTTTTTAATTCTACAGAGGAACTCCCCCTGAGGTAGAT------CTCTATGCCCAGGTATGGAAGGCTGGGCGTGAT-GTATCTGAAAA------------------AAGTTACACAGAGAAA----AAGTCAAGTTCATTTTTGCTATCCTGTACTGAAC-CAG---ATAAATTAACTGGTGTTAATTGGAGTGATGGCAATAGGCCTATAACTAGTCCCCAGCTTCCTATCCAGCCCTT-CCCCCATAAAGTCAGAATCCTGTCCACTTGAAACAGTG--AATCCCCAGCAGAGGACCTCG----------GCTCCCAAGATCGAATTCACCCTGGGCTGCCCGGAACCGGCTATCCTGCCCA--GGAGCTGTCAATGCCTGGAGCACATTGCAGGAAGAATGCAGGGGAGCTTGGTGG------GGAGGTGAGTGAGTGCAGA-CCGATTCCAGGAACTGCTTGGACCCTT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           596888 617 +  18854210 CAGATT-----------------T-GAAACTTCCC------------TCCACTGGGCGTGACTAA--GAAGGCTCCAGGCCCCCAAAGAAGAAAGGTTGATTCGTAACTGACTTGTTGGCTTGGTCATTATTATTCCCTCTCTGAGCACCT-AAGTCTGCAGCTTTATCCTTGACGAGATCTGGCTGCTCCTGGAGAGAGAGGAGCCCAAGAGACTTTTGAATCCGATAGATGAAC--AGCGTGAAG-AGGGCGCAGGCTATGTGCTTAAGCAT-GATGATTGAT-------GTCTCTGAAAAATTACACGaattttatataatgtata-ataaaaattataGGCCAGTTTCATTTTTGCATTCCACTACTGAATACAGATCATCACTTAACTAGTCCCA---GGGCAGACGGCAACAGGCTTAAAACTGCTTTTCCAGTTCCTATCCAGCCCTT-TCCCAATAAAGCGTGTCTCCCCTACTCTTGAAAAAGAGCTAACCTCCAGCGGAGGGTCAGAGAGGATTGTTGCTCAAAAGCCCCGATTCAGCCTCCGCTGCTT-----------CCGTGTCCGCTGGAGTCGGTAAAACCTGCAGTCAAGCGTCGGGC-----CAGAGTAGCTTCGTGGGGCGGAGGAGGTGAGTGAGCACTTA-GGGAT-----GAGCACCCTGGGCCTCT
i otoGar3.GL873550         C 0 T 10796
e mm10.chr17               58756926 415 -  94987271 T

a score=1752434.000000
s hg38.chr6_GL000254v2_alt  1796646 205 +   4827813 -GGGGTAGCTCCCTCTCAGACTGTCCTGCAGGTCCTTACAAGGCCCACTACTGAGCAGGAAGAATGTCCCCAGGAGAGGCAAAGGGTGGGGCAAAGGCGGGTATGGGGTCGCTTGCACTTTGCAGCAAACTGGAGAGT-GAGATGACAGGCAAG--GAGT-ACTGGCCCTCACATGGAAACCTATATCACACTGCCCAAAGGG-AATAGGA
s panTro5.chr6             30642822 205 + 175400573 -GGGGTAGCTCCCTCTCAGGCTGTCCTGCAGGTCCTTACAAGGCCCACTACTGAGCAGGCCGAATGTCCCCAGGAGAGGCAAGGGGTGGGGCAAAGGCGGGTATGGGGTCGCTTGCACTTTGCAGCAAACTGGAGAGT-GAGATGACAGGCAAG--GAGT-ACTGGCCCTCACATGGAAACCTACAGCACACTGCCCAAAGGG-AATAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31066784 205 + 173848474 -GGGGTAGCTCCCTCTCAGGCTGTCCTGCAGGTCCTTACAAGGCCCACTACTGAGCAGGCCGAATGTCCCCAGGAGAGGCAAGGGGTGGGGCAAAGGCGGGTATGGGGTCGCTTGCACTTTGCAGCAAACTGGAGAGT-GAGATGACAGGCAAG--GAGT-ACTGGCCCTCACATGGAAACCTACAGCACACTGCCCAAAGGG-AATAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     572125 205 +   2037526 -GGGGTAGCTCCCTCTCAGGCTGTCCTGCAGGTCCTTACAAGGCCCACTACTGAGCAGGCCGAATGTCCCCAGGAGAGGCAAGGGGTGGGGCAAAGGCGGGTATGGGGTCGCTTGCACTTTGCAGCAAACTGGAGAGT-GAGATGACAGGCAAG--GAGT-ACTGGCCCTCACATGGAAACCTACAGCACACTGCCCAAAGGG-AATAGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75229468 204 + 122973662 -GGGTTAGCTCCCACTCAGGCTGTCATGCATGTCCTCACAAGGCCCACTACTGAGCAGGAAGAATGTCCCCAGGAGAGGCAAGGGGTGGGGCAAAGGCAAGTATGGGGTCCCTTGCA-TTTGTGGCAAAATGGAGAGG-GAGATGAGAGGCAAG--GAGT-ACTGGCCCTCACATGGAAACCTAGAGCACACGGCCCAAAGGG-AATGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31133819 205 + 172585720 -GCAGTAGCTCCCACTCAGGCTGTCCTGCAAGTCCTCACAAGGCCCACCACTGAGCAGGAAGAATGTCCCCAGGAGAGGCAAGGGGTGGGGCAAAGGCAGGTGTGGGGTCACTTGCCCTTTGCGGCAAACTGGAGAGG-GAGAGGAGAGGCAAG--GAGT-ACTGGTCCTCATGTGGAAACCTAGAGCACACTGCCTAAAGGG-AACGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30425874 205 - 170955103 -GCAGTAGCTCCCACTCAGGCTGTCCTGCAAGTCCTCACAAGGCCCACCACTGAGCAGGAAGAATGTCCCCAGGAGAGGCAAGGGGTGGGGCAAAGGCAGGTGTGGGGTCACTTGCCCTTTGCGGCAAACTGGAGAGG-GAGAGGAGAGGCAAG--GAGT-ACTGGTCCTCACGTGGAAACCTAGAGCACACTGCCTAAAGGG-AACGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     680543 205 +   1495729 -GCAGTAGCTCCCACTCAGGCTGTCCTGCAAGTCCTCACAAGGCCCACCACTGAGCAGGAAGAATGTCCCCAGGAGAGGCAAGGGGTGGGGCAAAGGCAGGTGTGGGGTCACTTGCCCTTTGCGGCAAACTGGAGAGG-GAGAGGAGAGGCAAG--GAGT-ACTGGTCCTCACGTGGAAACCTAGAGCACACTGCCTAAAGGG-AACGGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     782142 205 -    863181 -GCAGTAGCTCCCACTCAGGCTGTCCTGCAAGTCCTCACAAGGCCCACCACTGAGCAGGAAGAATGTCCCCAGGAGAGGCAAGGGGTGGGGCAAAGGCAGGTGTGGGGTCACTTGCCCTTTGCGGCAAACTGGAGAGG-GAGAGGAGAGGCAAG--GAGT-ACTGGCCCTCACGTGGAAACCTAGAGCACACTGCCTAAAGGG-AACGGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29981230 205 -  71996105 -GGAGTAGCTCCCACTCAGGCTGTCCTGCAAGTCCTCACAAGGCCCACCACTGAGCAGGAAGAATGTCCCCAGGAGAGGCAAGGGGTAGGGCAAAGGCAGGTGTGGGGTCACTTGCACTTTGCGGCAAACTGGAGAGG-GAGAGGAGAGGCAAG--GAGT-ACTGGTCCTCATGTGGAAACCTAGAGCACACTGCCTAAAGGG-AATGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1       3453 205 +    779361 -GCAGTAGCTCCCACTCAGGCTGTCCTGCAAGTCCTCACAAGGCCCACCACTGAGCAGGAAGAATGTCCCCAGGAGAGGCAAGGGGTGGGGCAAAGGCAGGTGTGGGGTCCCTTGCA-TTTGCAGCAAACTGGAGAGG-GAGAGGAGAGGCAAG--GAGTAAATGGTCCTCACGTGGAAACCTACAGCACACTGCCCTGAGGG-AATGGGA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     589080 203 -   1829203 -GGAGTAGCTCCCACTCAGGCTGTCCTGCAAGTCCTCACAAGGCCCACCACTGAGCAGGAAGAATGT-CCTAGGAGAGGCAAGGGGTGGGGCAAAGGCAGGTG-GGGGTCGCTTGCACTTTGTGGCAAACTGGAGAGG-GAGAGGAGAGGCAAG--GAGT-ACTGGCCCTCACGTGGAAACCTAGAGCACATTGCCTAAAGGG-AATGGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30793080 205 + 171630274 -ggggtagctctcactcaggccaccctgcaggtcctcacacagcccatttctgagcaggaaggatgaccCCAGTAGAGGCAAGGGGTGAGGCAAAGGCAGGTATGGGGTCGCTTGCACTCTGCAGCAAACTGGAGAGG-GTCATGAGAAGCAAG--GAGT-ACTGGCCCTCACGTGGAAACCTAAAGTGCACTGCCCAAAGGG-AATGGGA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1224532 205 -   1771730 -GGGGTAGCTCTCACTCAGGCGGTTCTGCAGGTCCTCACACAGCCCATTTCTGAGCCGGAAGGATGCCCCCAGTAGAGGCAAGGGGCGAGGCACAGGCAGGTATGGGGTCGCTTGCACTTTGTAGCAAACTGGAGAGG-GACATGAGAAGCAAG--GAGT-GCTGGCCCTCACATGGAAACCTAGAGTGCATTGCCCAAAGGG-AATGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     433576 204 -    486031 -GGGGTGGCTCTCACTCAGGCGGTCCTGCAGGTCCTCACACAGCCCATTTCTGAGCAGGAAGGATG-CCCCAGTAGAGGCAAGGGGTGAGGCAAAGGCAGGTATGGGGTCACTTGCACTTTGCAGCAAACTGGAGAGG-GAGATGAGAAGCAAG--GAGT-ACTGGCCCTCACATGGAAACCTACGGTGCACTGCCCAAAGGG-AATGGGA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           586709 187 +  18854210 GGGGCCAGCATCCATTCTGCCTGTCCTCCAAGTCCTCATCCGCCCCGTCTC----CAGAACGGGCTCCCCCAAG-------------GAGGCAAATAT---TCTGGGGTCACCTGGACTTCGCTGC-AGCGGAAGAGGAGAGACTTGAGGCGAGCTGAGC-AGGGACGCTGCCGGTGAAACTTAGACCACAGTG--GAAAGGGCAATGGGA
i otoGar3.GL873550         T 10796 I 20377
e mm10.chr17               58756926 415 -  94987271 T

a score=116269.000000
s hg38.chr6_GL000254v2_alt  1796851 13 +   4827813 AAGGAACCACAGC
s panTro5.chr6             30643027 13 + 175400573 AAGGAACCACAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31066989 13 + 173848474 AAGGAACCACAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     572330 13 +   2037526 AAGGAACCACAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75229672 13 + 122973662 AGGGAACCACAGC
i nomLeu3.chr1a            C 0 I 14146
s rheMac8.chr4             31134024 13 + 172585720 AGGGAACCACAGC
i rheMac8.chr4             C 0 I 14311
s macFas5.chr4             30426079 13 - 170955103 AGGGAACCACAGC
i macFas5.chr4             C 0 I 14398
s macNem1.NW_012012100v1     680748 13 +   1495729 AGGGAACCACAGC
i macNem1.NW_012012100v1   C 0 I 13798
s cerAty1.NW_012002535v1     782347 13 -    863181 AGGGAAGCACAGC
i cerAty1.NW_012002535v1   C 0 I 27577
s chlSab2.chr17            29981435 13 -  71996105 AGGGAACCACAGC
i chlSab2.chr17            C 0 I 9294
s manLeu1.NW_012106264v1       3658 13 +    779361 AGGGAACCACAGC
i manLeu1.NW_012106264v1   C 0 I 21720
s colAng1.NW_012115577v1     589283 13 -   1829203 AGGAAACCACAGC
i colAng1.NW_012115577v1   C 0 I 14338
s calJac3.chr4             30793285 13 + 171630274 AGGGAACCACAGC
i calJac3.chr4             C 0 T 50461
s cebCap1.NW_016107755v1    1224737 13 -   1771730 TGGGAGCCACAGC
i cebCap1.NW_016107755v1   C 0 I 38770
s aotNan1.NW_018496901v1     433780 13 -    486031 AGGGAACCACAGC
i aotNan1.NW_018496901v1   C 0 T 68823
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           586896 20377 +  18854210 I

a score=7800.000000
s hg38.chr6_GL000254v2_alt  1796864 1 +   4827813 G
s panTro5.chr6             30643040 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31067002 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     572343 1 +   2037526 G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75243831 1 + 122973662 G
i nomLeu3.chr1a            I 14146 C 0
s rheMac8.chr4             31148348 1 + 172585720 G
i rheMac8.chr4             I 14311 C 0
s macFas5.chr4             30440490 1 - 170955103 G
i macFas5.chr4             I 14398 C 0
s macNem1.NW_012012100v1     694559 1 +   1495729 G
i macNem1.NW_012012100v1   I 13798 C 0
s cerAty1.NW_012002535v1     809937 1 -    863181 G
i cerAty1.NW_012002535v1   I 27577 C 0
s chlSab2.chr17            29990742 1 -  71996105 G
i chlSab2.chr17            I 9294 C 0
s manLeu1.NW_012106264v1      25391 1 +    779361 G
i manLeu1.NW_012106264v1   I 21720 C 0
s colAng1.NW_012115577v1     603634 1 -   1829203 G
i colAng1.NW_012115577v1   I 14338 C 0
s otoGar3.GL873550           607273 1 +  18854210 G
i otoGar3.GL873550         I 20377 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     433793 68823 -    486031 T
e cebCap1.NW_016107755v1    1224750 38770 -   1771730 I
e calJac3.chr4             30793298 50461 + 171630274 T

a score=210750.000000
s hg38.chr6_GL000254v2_alt  1796865 28 +   4827813 AGGTCCACAGGGGAGG-GCTGGGGGAAGC
s panTro5.chr6             30643041 28 + 175400573 AGGTCCACAGGGGAGG-GCTGGGGGGAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31067003 28 + 173848474 AGGTCCACAGGGGAGG-GCTGGGGGGAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     572344 28 +   2037526 AGGTCCACAGGGGAGG-GCTGGGGGGAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75243832 28 + 122973662 AGGTCCACAGGGGAGG-GGTGGGAGGAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31148349 28 + 172585720 AGGTCCACAGGGGAGG-GGTGGGGGGAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30440491 28 - 170955103 AGGCCCACAGGGGAGG-GGTGGGGGGAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     694560 28 +   1495729 AGGTCCACAGGGGAGG-GATGGGGGGAGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     809938 28 -    863181 AGGTCCACAGGGGAGG-GGTGGGGGGAGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29990743 28 -  71996105 AGGTCCACAGGGGAGG-GGTGGGGGGAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      25392 28 +    779361 AGGTCCACAGGGGAGC-GGTGGGGAGCAG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     603635 28 -   1829203 AGGTCCACAGGGGAGG-GGTGGGGGGAGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30742837 28 + 171630274 AGGTCCGCAGGGGCGG-GGTGGACAGAGG
i calJac3.chr4             T 50461 C 0
s aotNan1.NW_018496901v1     364970 28 -    486031 AGGTCCGCAGGGGCGG-GGTGGACGGAGG
i aotNan1.NW_018496901v1   T 68823 C 0
s otoGar3.GL873550           607274 29 +  18854210 AGGTCCTCTGGGGAGGAGGAGGGGTGAGA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e cebCap1.NW_016107755v1    1224750 38770 -   1771730 I

a score=410845.000000
s hg38.chr6_GL000254v2_alt  1796893 42 +   4827813 CTTACCCAGGGCGGCGAGTGCAGCCTCAGTGGCAGAAATCCC
s panTro5.chr6             30643069 42 + 175400573 CTTACCCAGGGCGGCGAGTGCAGCCTCAGTGGCAGAAATCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31067031 42 + 173848474 CTTACCCAGGGCGGCGAGTGCAGCCTCAGTGGCAGAAATCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     572372 42 +   2037526 CTTACCCAGGGCGGCGAGTGCAGCCTCAGTGGCAGAAATCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75243860 41 + 122973662 CTTACCCAGGGCGGCGAGTGCAGCCTCGGTAGCAGAAAT-CG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31148377 42 + 172585720 CTTACCCAGGGCGGCGAGTGCAGCCTCAGTGGCAGAAATCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30440519 42 - 170955103 CTTACCCAGGGCAGCGAGTGCAGCCTCAGTGGCAGAAATCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     694588 42 +   1495729 CTTACCCAGGGCAGCGAGTGCAGCCTCAGTGGCAGAAATCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     809966 42 -    863181 CTTACCCAGGGCAGCGAGTGCAGCCTCAGTGGCAGAAATCCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29990771 42 -  71996105 CTTACCCAGGGCAGTGAGTGCAGCCTCAGTGGCAGAAATTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      25420 42 +    779361 CTTACCCAGGGTGGTGAGTGCAGCCTCAGTGGCAGAAATCCC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     603663 42 -   1829203 CTTACCCAGGGCAGCGAATGCAGCCTCAGTGGCAGAAATCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30742865 42 + 171630274 CTTACTCGGGGCGGCGAGTGCAGCCTCAGTGGCAGAAATCCC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1263520 42 -   1771730 CTTACCCAGGGCAGCGAGTGCAGCCTCAGTGGCAGACATCCC
i cebCap1.NW_016107755v1   I 38770 T 89447
s aotNan1.NW_018496901v1     364998 42 -    486031 CTTACCCAGGGCGGCGAGTGCAGCCTCAGTGGCAGAAATCCC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           607303 38 +  18854210 CTTAC----AGGGGTGAACACGGCCTGAGCTGCAGAAACCCC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T

a score=7500.000000
s hg38.chr6_GL000254v2_alt  1796935 2 +   4827813 AG
s panTro5.chr6             30643111 2 + 175400573 AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31067073 2 + 173848474 AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     572414 2 +   2037526 AG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75243901 2 + 122973662 AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31148419 2 + 172585720 AG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30440561 2 - 170955103 AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     694630 2 +   1495729 AG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     810008 2 -    863181 AG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29990813 2 -  71996105 AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      25462 2 +    779361 CT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     603705 2 -   1829203 AG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30742907 2 + 171630274 TG
i calJac3.chr4             C 0 C 0
s otoGar3.GL873550           607341 2 +  18854210 CG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     365040 0 -    486031 C
e cebCap1.NW_016107755v1    1263562 89447 -   1771730 T

a score=152034.000000
s hg38.chr6_GL000254v2_alt  1796937 21 +   4827813 -CGGGCCCCCTCCTG------------------------------------------------------CTGCAGA
s panTro5.chr6             30643113 21 + 175400573 -CGGGCCCCCTCCTG------------------------------------------------------CTGCAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31067075 21 + 173848474 -CGGGCCCCCTCCTG------------------------------------------------------CTGCAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     572416 21 +   2037526 -CGGGCCCCCTCCTG------------------------------------------------------CTGCAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75243903 21 + 122973662 -CGCGCCCCCTCCTG------------------------------------------------------CTGCAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31148421 21 + 172585720 -CGCACCCCCTCCTG------------------------------------------------------CAGCAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30440563 21 - 170955103 -CGCGCCCCCTCCTG------------------------------------------------------CAGCAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     694632 21 +   1495729 -CGCGCCCCCTCCTG------------------------------------------------------CAGCAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     810010 21 -    863181 -CGCGCCCCCTCCTG------------------------------------------------------CTGCAGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29990815 21 -  71996105 -TGCGCCCCCTCCTG------------------------------------------------------CAGCAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      25464 21 +    779361 -TGCGCCCCCTCCTG------------------------------------------------------CCGCAGA
i manLeu1.NW_012106264v1   C 0 I 39
s colAng1.NW_012115577v1     603707 21 -   1829203 -CGCACCCCCTCCTG------------------------------------------------------CAGCAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30742909 73 + 171630274 ---CGCCCCCTCCTGCTGCAGACCCCGCTCCTCCTGCAGACCCCGCTCCTCCTGCAGACCCCGCTCCTCCTGCAGA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1174115 21 -   1771730 -cgcgccccctcccg------------------------------------------------------ctgcaga
i cebCap1.NW_016107755v1   T 89447 C 0
s aotNan1.NW_018496901v1     365040 21 -    486031 -CGCGCCCCCTCCTG------------------------------------------------------CTGCAGA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           607343 22 +  18854210 CCACGCTTCTTCCTC------------------------------------------------------GTCTGGA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T

a score=436681.000000
s hg38.chr6_GL000254v2_alt  1796958 51 +   4827813 CCCCGCTCCTCCTGCGAGGCCCCAGACGAAGCCCGACCCCCAGCTGCCTGC
s panTro5.chr6             30643134 51 + 175400573 CCCCGCTCCTCCTGCGAGGCCCCAGACGAAGCCCGACCCCCAGCTGCCTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31067096 51 + 173848474 CCCCGCTCCTCCTGCGAGGCCCCAGACGAAGCCCGACCCCCAGCTGCCTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     572437 51 +   2037526 CCCCGCTCCTCCTGCGAGGCCCCAGACGAAGCCCGACCCCCAGCTGCCTGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75243924 51 + 122973662 CCCCACTCCTCCTGTGAGGCCCCAGAGGAAGCCCGACCCCCAGCTGCCTGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31148442 51 + 172585720 CCCCGCTCCTCCTGCGAGGCCCCAGATGAAACCCGACCCCCAGCTGCCTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30440584 51 - 170955103 CCCCGCTCCTCCTGCGAGGCCCCAGATGAAACCCGACCCCCAGCTGCCTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     694653 51 +   1495729 CCCCGCTCCTCCTGCGAGGCCCCAGATGAAACCCGACCCCCAGCTGCCTGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     810031 51 -    863181 CCCCGCTCCTCCTGCGAGGCCCCAGATGAAACCCGACCCCCAGCTGCCTGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29990836 51 -  71996105 CCCCGCTCCTCCTGCGAGGCCCCAGATGAAGCCCAACCCCCAGCTGCCTGC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     603728 51 -   1829203 CCCCGCTCCTCCTGCGAGGCCCCAGATGAAGCCCGACCCCCAGCTGCCTGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30742982 51 + 171630274 CCCCGCTCCTCCTGCGAGGCCCCAGACTAAGCCCTACCTCCAGCTGCCTGC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1174136 51 -   1771730 ccccgctccTCCTGCGAGGCCCCAGACTAAGCCCTACCCCGAGCTGCCTGC
i cebCap1.NW_016107755v1   C 0 I 89427
s aotNan1.NW_018496901v1     365061 51 -    486031 CCCTGCTCCTCCTGCGAGGCCCCAGACTAAGCCCTAACCCAAGCTGCCTGC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           607365 51 +  18854210 CAAAGCTACTCTTGCATGGCCCATGAGGAAGCATGACCACCAGCTGCTTCC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e manLeu1.NW_012106264v1      25485 39 +    779361 I

a score=147625.000000
s hg38.chr6_GL000254v2_alt  1797009 23 +   4827813 GCAGCCTCCAGG-CAGGGGTCGCG
s panTro5.chr6             30643185 23 + 175400573 GCAGCCTCCAGG-CAGGGGTCGCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31067147 23 + 173848474 GCAGCCTCCAGG-CAGGGGTCGCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     572488 23 +   2037526 GCAGCCTCCAGG-CAGGGGTCGCG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75243975 23 + 122973662 GCAGCCTCCAGG-CAGGCGTCGCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31148493 23 + 172585720 GCAGCCTCCTGG-CAGGGGTCGCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30440635 23 - 170955103 GCAGCCTCCTGG-CAGGGGTCGCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     694704 23 +   1495729 GCAGCCTCCTGG-CAGGGGTCGCG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     810082 23 -    863181 GCAGCCTCCTGG-CAGGGGTCGCG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29990887 23 -  71996105 GCAGCCTCCAGG-CAGGGGTCGCG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     603779 16 -   1829203 GCAGCCTCCTGG-CGCG-------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30743033 23 + 171630274 GCAGCCTCCACA-CAGCAGTCGCG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1263614 23 -   1771730 GCAGCCTCCAGG-GCGGAGCCGCG
i cebCap1.NW_016107755v1   I 89427 C 0
s aotNan1.NW_018496901v1     365112 23 -    486031 GCAGCCTCCAGA-CAGGGGTCGCG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           607416 19 +  18854210 ---GCCTTTTGGACCGGTATCA--
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e manLeu1.NW_012106264v1      25485 39 +    779361 I

a score=1804075.000000
s hg38.chr6_GL000254v2_alt  1797032 202 +   4827813 GGGTGCTTCGGCGAGAGAGTCTGGGCCAAAGCGCCAAAATCCGCCGCTGTCGCTCAGCCGCAGCCTGTTTGGGGCTGGGGAGCCTCTCCTGGTCGGTGATCGTCGCGGACAATAGACGAGACCAGAAATTAGATTTGGTTCCGGGATCAA----GAACCTTTAATCAGGGA-ATGGAGATGGCAGGGGACGAGGCCTAAGAGATGTA
s panTro5.chr6             30643208 202 + 175400573 GGGTGCTTCGGCGAGAGAGTCAGGGCCAAAGCGCCAAAATCCGCCGCTGTCGCTCAGCCGCAGCCTGTTTGGGGCTGGGGAGCCTCTCCTGGTCGGTGATCGTCGCGGACAATAGACGAGACCAGAAATTAGATTTGGTTCCGGGATCAA----GAACCTTTAATCAGGGA-ATGGAGATGGCAGGGGACGAGGCCTAAGAGATGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31067170 202 + 173848474 GGGTGCTTCGGCGAGAGAGTCAGGGCCAAAGCGCCAAAATCCGCCGCTGTCGCTCAGCCGCAGCCTGTTTGGGGCTGGGGAGCCTCTCCTGGTCGGTGATCGTCGCGGACAATAGACGAGACCAGAAATTAGATTTGGTTCCGGGATCAA----GAACCTTTAATCAGGGA-ATGGAGATGGCAGGGGACGAGGCCTAAGAGATGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     572511 202 +   2037526 GGGTGCTTCGGCGAGAGAGTCTGGGCCAAAGCGCCAAAATCCGCCGCTGTCGCTCAGCCGCAGCCTGTTTGGGGCTGGGGAGACTCTCCTGGTCGGTGATCGTCGCGGACAATAGACGAGACCAGAAATTAGATTTGGTTCCGGGATCAA----GAACCTTTAATCAGGGA-ATGGAGATGGCAGGGGACGAGGCCTAAGAGATGCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75243998 202 + 122973662 GGCCGCTTAGGTGAGGGAGTCTGGGCCAAAGCTCCAAAATCCGCCGCTGTCGCTCAGCCGCAGCCTGTTTGGGGCTGGGGAGCCTCTCCTGGTCGGTGATCGTCGTGGACAATAGACGAGACCAGAAATTAGATTTGGTTCCAGGATCAA----GGACCTTTAATCAGGGA-ATGGAGATGGCAGGGGACGAGGCCTAAGAGATGTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31148516 202 + 172585720 GGGCGCTTCTGCGAGGGAGTCTGGGCCAAAGCGCCAAAATCCGCCGCTGTCGCTCAGCCGCAGCCTGTTTGGGGCTGGGGAGCCTCTCCTGGTCCGTGACTGTCGCGGACAATAGACGAGACCAGAAATTAGATTTAGTTCCAGGATCAA----GTACCTTTAATCAGGGA-ATGGAGATGGCAGGGGACGAGGCCTAAGAGATGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30440658 202 - 170955103 GGGCGCTTCTGCGAGGCAGTCTGGGCCAAAGCGCCAAAATCCGCCGCTGTCGCTCAGCCGCAGCCTGTTTGGGGCTGGGGAGCCTCTCCTGATCGGTGACTGTCGCGGACAATAGACGAGACCAGAAATTAGATTTGGTTCCAGGATCAA----GTACCTTTAATCAGGGA-ATGGAGATGGCAGGGGACGAGGCCTAAGAGATGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     694727 202 +   1495729 GGGCGCTTCTGCGAGGCAGTCTGGGCCAAAGCGCCAAAATCCGCCGCTGTCGCTCAGCCGCAGCCTGTTTGGGGCTGGGGAACCTCTCCTGATCGGTGACTGTCGCGGACAATAAACGAGACCAGAAATTAGATTTGGTTCCAGGATCAA----GTACCTTTAATCAGGGA-ATGGAGATGGCAGGGGACGAGGCCTAAGAGATGTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     810105 202 -    863181 GGGCGCTTCTGCGAGGCAGTCTGGGCCAAAGCGCCAAAATCCGCCGCTGTCGCTCAGCCGCAGCCTGTTTGGGGCTGGAGAGCCTCTCCTGGTCGGTGACTGTCGCGGACAATAGAAGAGACCAGAAATTAGATTTGGTTCCAGGATCAA----GTACCTTTAATCAGGGA-ATGGAGATGGCAGGGGACGAGGCCTAAGAGATGTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29990910 202 -  71996105 GGGCGCTTCTGCGAGGGAGTCTGGGCCAAAGCGCCAAAATCCGCCGCTGTCGCTCAGCCGCAGCCTGTTTGGGGCTGGGGAGCCTCTCCTGGTCGGTGACTGTCGCGGACAATAGACGAGACCAGAAATTAGATTTGGTTCCAGGATCAA----GGACATTTAATCAGGGA-ATGGAGATGGCAGGGGACGAAGCCTAAGAGATGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      25524 202 +    779361 GGGCGCTTCGGGGAGAGAGTCTGGACCAAAGAGCCAAAATCCGCCGCTGTCGCTCAGCTGCAGCATGTTTGGCGCTGGGAAGCCTCTCCTGGTGGGCGACCGTCACGGACAATCGACAGGACCAGAAATTAGATTTGAGTCCAGAATCAA----GAACCTTTAATTAGGGA-TTGGAGGTGGCAGAGGGCCAGGATTAAGGGAGATA
i manLeu1.NW_012106264v1   I 39 C 0
s colAng1.NW_012115577v1     603795 202 -   1829203 GGGCGCTTCTGCGAGGGAGTCTGGGCCAAAGCGCCAAAAACCGCCGCCCTCGCTCAGCCGCAGCCTGTTTGGGGCTGGGCAGCCTCTCCTGATCGGTGACTGTCGCGGACAATAGACGAGACCAGAAATTAGATTTGGTTCCAGGATCAA----GGACATTTAATCAGGGA-ATGGAGATGGCAGGGGACGAGGCCTAAGAGATGTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30743056 202 + 171630274 GGGCGCTTCGAAGAGGAAGTCTGGGCCAAAGGGCCAAAATCCTCCGCTGTCGCTCAGCCGCAGCCTGTTTGGCGCTGGGGAGCCTCTCCCGGTCGGTGACCGTCGTGGACAATCAACGGGAACAGAAAGTTGATTAGGGTCCAGGATCAC----GGACATTTAATCAGGGA-CTGGAGATGGCAGGGGGCGAGGATTAAGGGATGTA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1263637 202 -   1771730 AGGCGCTTCAGCGAGGGAGTCTGGGCCAAAGCGCGAAAATCCGCCACTGTCGCTCAGCCGCAGCCTGCTTGGCGCTGGGGAGCGTCTCCTGGCGGGCGACCGTCGCGAACAATCAACGGACCCAGAAATTAGATTTGGGTCCAAAATCAA----GGACCTTTAACCAGGGA-CTGGAGACGGCAGGGGACGAGGCCTAAGGGATGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     365135 202 -    486031 GGGCGCTTCGGAGAGGCAGTCTGGGCCAAAGCGCCAAAATCCGCCGCTGTCGCTCAGCCGCAGCCTGTTTGGCGCTGGGGAGCCTCTCCTGGTCCGTGACCGTCGCGGACAATCAACGGGAACAGAAATTTAATTAGGGTCCAGGATCAA----GGACCTTTAACCAGGGA-TTGGAGATGGCAGGGGGCGAGGATTAAGGAATGTA
i aotNan1.NW_018496901v1   C 0 I 83984
s otoGar3.GL873550           607435 201 +  18854210 AGGTTCATAGACTACTGAGTCTAG-CTGTAGAGCCAAAAACTGCCGCTATTGCTCAGCTGAAGCCTGTGTGGCCCTGGGGAGCCTCCCCAGGCCCACGTCCCTCACAACC-----CTGAGTCTATCGACAGGGTTTGGGTTCAGGATCAAGGAGGGAGCTTTAACCAGGGATTTGGTGGGGGTACAGGTGGTGGCCCAAAGGATCTA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T

a score=1110438.000000
s hg38.chr6_GL000254v2_alt  1797234 145 +   4827813 GACAGCAGGTCCTGTCTGCTTAGGTCGCAAAGGGGAAGAAGGGGCGGGAC-TCGGGGTCCTGGACTGG------------------------------------GGCTGGGAAGGGTC---------CGCTCCAGGAGG----GTGTGGGTTCCGATGCCTGGGTCCTGGAGGTCCGGGGAGTCGCGGAGGGACC
s panTro5.chr6             30643410 145 + 175400573 GACAGCAGGTCCTGTCTGCTTAGGTCGCAAAGGGGAAGAAGGGGCGGGAC-TCGGGGTCCTGGACTGG------------------------------------GGCTGGGAAGGGTC---------CGCTCCAGGAGG----GTGTGGGTTCAGATGCCTGGGTCCTGGAGGTCCGGGGAGTCGCGGAGGGACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31067372 145 + 173848474 GACAGCAGGTCCTGTCTGCTTAGGTCGCAAAGGGGAAGAAGGGGCGGGAC-TCGGGGTCCTGGACTGG------------------------------------GGCTGGGAAGGGTC---------CGCTCCAGGAGG----GTGTGGGTTCAGATGCCTGGGTCCTGGAGGTCCGGGGAGTCGCGGAGGGACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     572713 145 +   2037526 GACAGCAGGTCCTGTCTGCTTAGGTCGCAAAGGGGAAGAAGGGGCGGGAC-TCGGGGTCCTGGACTGG------------------------------------GGCTGGGAAGGGTC---------CGCTCCAGGAAG----GTGTGGGTTCCGATGCCTGGGTCCTGGAGGTCCGGGGAGTCGCGGAGGGACC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75244200 145 + 122973662 GACAGTGGGCCCTGTCTGCTTAGGTCGCAAAGGGGAAGAAGAGGCGGGAC-TCGGAGTCCTGGACTGG------------------------------------GGCTGGGAAGGGTC---------CGCTCCAAGAGG----GTGTGGGTTCCGATGCCTGGGTCCTGGAGGTCCGGGGAGTCGCGGAGGGACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31148718 145 + 172585720 GACAGCAAGTCCTGTCTGCTTAGGTCGCAAAGAGGAAGAAGAGACGGGAC-TCGGGGTCCTGGACTGG------------------------------------GACTAGGAAGGGGC---------GGCTCCAAGAGG----GTGCGGGTTCCCATGCCAGGGTCCTGGAGGTCCAGGGAGTTGCGGAGGGACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30440860 134 - 170955103 GACAGCAAGTCCTGTCTGCTTAGGTCGCAAAGAGGAAGAAGAGACGGGAC-TCGGGGTCCTGGACTGG------------------------------------GACTAGGAAGGGGC---------GGCTCCAAGAGG----GTGCGGGTTCCCATGC-----------AGGTCCAGGGAGTTGCGGAGGGACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     694929 145 +   1495729 GACAGCAAGTCCTGTCTGCTTAGGTCGCAAAGAGGAAGAAGAGACGGGAC-TCGGGGTCCTGGACTGG------------------------------------GACTAGGAAGGGGC---------GGCTCCAAGAGG----GTGCGGGTTCCCATGCCAGGGTCCTGGAGGTCCAGGGAGTTGCGGAGGGACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     810307 145 -    863181 GACAGCAAGTCCTGTCTGCTTAGGTCGCAAAGAGGAAGAAGAGACGGGAC-TCGGGGTCCTGGACTGG------------------------------------GACTAGGAAGGGGC---------GGCTCCAAGAGG----GTGCGGGTTCCCATGCCAGGGTCCTGGAGGTCCGGGGAGTTGCGGAGGGACC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29991112 145 -  71996105 GACAGCAAGTCCTGTCTGCTTAGGTCGCAAAGAGGAAGAAGAGACGGGAC-TCGGGGTCCTGGACTGG------------------------------------GACTAGGAAGGGGC---------GGCTCCAAGAGG----GCGCGGGTTCCCATGCCAGGGTCCTGGAGGTCCAGGGAGTTGCGGAGGGACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      25726 191 +    779361 GACAGCAGGTCCTGTCTGCTTAGGTCGCAAATGGGAAGAGGAGGTTGGATGCCAGGGTCCTGGACTCGCAGTGTTCGGGTGGGGCCAGAATCCTGGACTCTCAAGGCTGGGGAGGGGCTGCCCTCTAGGATCCAATAGG----GTGTAGGTTCAGATGCCTGGGTCCTGGAGGTCCGGGGAGTGGCGGAGGAACC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     603997 145 -   1829203 GACAGCAAGTCCTGTCTGCTTAGGTCGCGAAGAGGAAGAAGAGACGGGAC-TCGGGGTCCTGGACTGG------------------------------------GACTAGGAAGGGGC---------GGCTCCAAGAGG----GTGCGCGTTCCCATGCCAGGGTCCTGGAGGTCCGGGGAGTCGCGAAGGGACC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30743258 155 + 171630274 GACAGAAGGTCCTGTCTGCTTAGGTCGCAAATGGAAAGAGGC---GGAACGCCGGGGTCGCGGACTGG------------------------------------GGCTGGGGAGGAGCCACCCTCCAGGATCCAAGAGGGTGTGTGTGGGTTCCAATGCC-GGGTCCTGCAGGTTCAGGGAGTGCCGGAGGGACC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1263839 154 -   1771730 GACAGCAGGTCCTGTCGGCTTAGGTCGCAAAGGGGAAGAGGAGGGGGAACCCCAGAGTCCTGGACTGG------------------------------------GGCTGGGGCGGGGCCGCCCTCCAGGATCCCACAGG----GTGTGAGTTCCGATGCC-GGGTCCTGCAGGTCCGGGGCGTGGCGGAGGAACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     449321 154 -    486031 GACAGCAGGTCCTGTCTGCCTAGGTCGCAAAGGGGAAGAAGAGGCGGAACGCCTGAGTCCTGGACTGG------------------------------------GGCTGGGGAGGGGCCGCCCTCCAGGATCCAAGAGG----GTGTGAGTTCCGATGCC-GGGTCCTGCAGGTCCGGGGCGTGGCGGAGGAACC
i aotNan1.NW_018496901v1   I 83984 I 11
s otoGar3.GL873550           607636  82 +  18854210 GATAGTAG-----GTCTGTTTAGCTCGCAAAGGGGAGGAAGAGGCAGAACGTCAGAGCCCTGGA---G------------------------------------GTCTGG-------C--------------------------------------------------------------AGTCACGGAGAAACC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T

a score=165244.000000
s hg38.chr6_GL000254v2_alt  1797379 27 +   4827813 TCCCTCCGGTAACCGAC-GGATTGGGGA
s panTro5.chr6             30643555 27 + 175400573 TCCCTCCGGTAACCGAG-GGATTGGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31067517 27 + 173848474 TCCCTCCGGTAACCGAG-GGATTGGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     572858 27 +   2037526 TCCCTCCGGTAACCGAG-GGATTGGGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75244345 27 + 122973662 GCCCTCCGGTAACCGAG-GGATTGAGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31148863 27 + 172585720 GCCCCCCGGTAACTGAG-GGACTGGGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30440994 27 - 170955103 GCCCCCCGGTAACTGAG-GGACTGGGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     695074 27 +   1495729 GCCCCCCGGTAACCGAG-GGACTGGGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     810452 27 -    863181 GCCCTCCGGTAACCGAG-GGACTGGGGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29991257 27 -  71996105 GCCCTCCGGTAACCGAG-GGACTGGGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      25917 27 +    779361 GCCCTCGGGTTCCCGAT-GGATTGGGGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     604142 27 -   1829203 GCCCTCCGGTAACCGAG-GGACTGGGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30743413 27 + 171630274 GCCCTCCGGTTCCCGAG-AGATAGGGGG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1263993 11 -   1771730 GCCTTC-----------------AGGAG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           607718 28 +  18854210 ACCCTCCGGTGGGGGAGTGAATTGGGGG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     449475 11 -    486031 I

a score=479730.000000
s hg38.chr6_GL000254v2_alt  1797406 50 +   4827813 CAAATGCTCTGCCCAGTCTGATCCCAGACATCCTTGTAACCCA--ATATAGT
s panTro5.chr6             30643582 50 + 175400573 CAAATGCTCGGCCCAGTCTGATCCCAGACATCCTTGTAACCCA--ATATAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31067544 50 + 173848474 CAAATGCTCGGCCCAGTCTGATCCCAGACATCCTTGTAACCCA--ATATAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     572885 50 +   2037526 CAAATGCTCGGCCCAGTCTGATCCCAGACATCCTTGTAACCCA--ATATAGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75244372 50 + 122973662 CAAATGCTCGGCCCAGTCTGATCCCAGACATCCTTGTATCCCA--ATATAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31148890 50 + 172585720 CAAATGCTCGGCCCAGTCTGATCCCAGACATTCTTGTAACCCA--ATATAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30441021 50 - 170955103 CAAATGCTCGGCCCAGTCTGATCCCAGACATTCTTGTAACCCA--ATATAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     695101 50 +   1495729 CAAATGCTTGGCCCAGTCTGATCCCAGACATTCTTGTAACCCA--ATATAGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     810479 50 -    863181 CAAATGCTCGGCCCAGTCTGATCCCAGACATTCTTGTAACCCA--ATATAGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29991284 50 -  71996105 CAAATGCTCGGCCCAGTCTGATCCCAGACATTCTTGTAACCCA--ATATAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      25944 50 +    779361 CAAATGCTTAGCCCAGTCTGATCCCAGACATCCTTGTAACCGA--ATATAGT
i manLeu1.NW_012106264v1   C 0 I 1
s colAng1.NW_012115577v1     604169 50 -   1829203 CAAATGCTCGGCCCACTCTGATCCCAGACATTCTTGTAACCCA--ATATAGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30743440 50 + 171630274 CAAATGCTCGGCCCAGTCTGAGCCCAGACGTCCTTGTAACCCA--ATAGAGT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1264004 50 -   1771730 CAAATGCTCAGCACCGGCGGATCCCAGACATCCTTGTAACCCA--ATATAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     449486 50 -    486031 CAAATGCACAGCCCCGTCTGATCACAGACAGCCTTGTAACCCG--ATATAGT
i aotNan1.NW_018496901v1   I 11 I 1
s otoGar3.GL873550           607746 52 +  18854210 CAAACGCCTGGCGCAGCCTGATCACAGATGTCTTTGTAACACATTATATAGT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T

a score=73918.000000
s hg38.chr6_GL000254v2_alt  1797456 17 +   4827813 TACAGCTCCGACGCCAT
s panTro5.chr6             30643632 17 + 175400573 TACAGCTCCGACGCCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31067594 17 + 173848474 TACAGCTCCGACGCCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     572935 17 +   2037526 TACAGCTCCGACGCCAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75244422 17 + 122973662 TACAGCTCCGACGCCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31148940 17 + 172585720 TACAGCTCGGACGCCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30441071 17 - 170955103 TACAGCTCGGACGCCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     695151 17 +   1495729 TACAGCTCGGACGCCAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     810529 17 -    863181 TACAGCTCGGACGCCAT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29991334 17 -  71996105 TACAGCTCAGACGCCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      25995 17 +    779361 TCCAACTCCGATGCCAC
i manLeu1.NW_012106264v1   I 1 C 0
s colAng1.NW_012115577v1     604219 17 -   1829203 TACAGCTCAGACGCCAT
i colAng1.NW_012115577v1   C 0 T 29929
s cebCap1.NW_016107755v1    1264054  1 -   1771730 --------------C--
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           607798  1 +  18854210 --------------C--
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     449536  1 -    486031 I
e calJac3.chr4             30743490  0 + 171630274 C

a score=11550.000000
s hg38.chr6_GL000254v2_alt  1797473 12 +   4827813 GTTCTTCCTGGG
s panTro5.chr6             30643649 12 + 175400573 GTTCTTCCTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31067611 12 + 173848474 GTTCTTCCTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     572952 12 +   2037526 GTTCTTCCTGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75244439 12 + 122973662 GTTCTTCCTGGG
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           607799  0 +  18854210 C
e aotNan1.NW_018496901v1     449536  1 -    486031 I
e cebCap1.NW_016107755v1    1264055  0 -   1771730 C
e calJac3.chr4             30743490  0 + 171630274 C
e colAng1.NW_012115577v1     604236 29929 -   1829203 T
e manLeu1.NW_012106264v1      26012  0 +    779361 C
e chlSab2.chr17            29991351  0 -  71996105 C
e cerAty1.NW_012002535v1     810546  0 -    863181 C
e macNem1.NW_012012100v1     695168  0 +   1495729 C
e macFas5.chr4             30441088  0 - 170955103 C
e rheMac8.chr4             31148957  0 + 172585720 C

a score=360806.000000
s hg38.chr6_GL000254v2_alt  1797485 60 +   4827813 TCCAGCTCCAACGCCATGTCCTTCCTGGGTCCC-TCCAAAGTAGGGTTGGAGGATCAACTA
s panTro5.chr6             30643661 60 + 175400573 TCCAGCTCCAACGCCATGTCCTTCCTGGGTCCC-TCCAAAGTAGGGTTGGAGGATCAACTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31067623 60 + 173848474 TCCAGCTCCAACGCCATGTCCTTCCTGGGTCCC-TCCAAAGTAGGGTTGGAGGATCAACTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     572964 60 +   2037526 TCCAGCTCCAATGCCATGTCCTTCCTGGGTCCC-TCCAAAGTAGGGTTGGAGGATCAACTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75244451 60 + 122973662 TCCAGCTCCAACGCCATGTCCTTCCTGGGTCCC-TCCAAACTAGGGTTGGAGGATCAACTA
i nomLeu3.chr1a            C 0 I 30585
s rheMac8.chr4             31148957 43 + 172585720 -----------------GTTCTTCCTGGGTCCC-TCCAAACTAGGGTTGGAGGATCAACTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30441088 43 - 170955103 -----------------GTTCTTCCTGGGTCCC-TCCAAACTAGGGTTGGAGGATCAACTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     695168 43 +   1495729 -----------------GTTCTTCCTGGGTCTC-TCCAAACTAGAGTTGGAGGATCAACTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     810546 43 -    863181 -----------------GTTCTTCCTGGGTCCC-TCCAAACTAGGGTTGGAGGATCAACTA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29991351 43 -  71996105 -----------------ATTCTTCCTGGGTCTC-TCCAAACTAGGGTTGGAGGATCAACTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      26012 43 +    779361 -----------------GTCCTTCCCGGGTCCC-TCCGTACTAGGGCTGGAGACTCAACTA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     574307 43 -   1829203 -----------------GTCCTTCCCGGGTCCC-TCCAAATGAGGGTTGGAGAATCTACTG
i colAng1.NW_012115577v1   T 29929 C 0
s calJac3.chr4             30743490 60 + 171630274 TACAGTTCCGATGCCGTGTCCTTCCCGGGTCCC-TCCATACTAGGATTGGAGACCCAACCG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1264055 60 -   1771730 TCCAGCTCCGGCGCCACGTCCTTCCCGGGTCCC-TCCACACTAGGGTTGCAGACTCAATAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     449537 60 -    486031 TCCAGCTCCGACGCCACGTCCTTCCCGGGTCCC-TCCACACTAGGGTTGCAGACTCAATAG
i aotNan1.NW_018496901v1   I 1 C 0
s otoGar3.GL873550           607799 43 +  18854210 ------------------TCCAGCCTTGGTCCCAACCATACTGGGTGTGGAGAATCACCAG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T

a score=266543.000000
s hg38.chr6_GL000254v2_alt  1797545 30 +   4827813 GTGGATTCCGGCGAGGAGGTATCTTCCTCC
s panTro5.chr6             30643721 30 + 175400573 GTGGATTCCGGCGAGGAGGTATCTTCCTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31067683 30 + 173848474 GTGGATTCCGGCGAGGAGGTATCTTCCTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     573024 30 +   2037526 GTGGATTCCGGCGAGGAGGTATCTTCCTCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75275096 30 + 122973662 GGGGATGCCGGGGAGGAGGGATCTTCGTCT
i nomLeu3.chr1a            I 30585 C 0
s rheMac8.chr4             31149000 30 + 172585720 GTGGATTCCGGGGAGGAGGAACCTTCCTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30441131 30 - 170955103 GTGGATTCCGGGGAGGAGGAACCTTCCTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     695211 30 +   1495729 GTGGATTCCGGGGAGGAGGAACCTTCCTCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     810589 30 -    863181 GTGGATTCCGGGGAGGAGGAACCTTCCTCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29991394 30 -  71996105 GTGGATTCCGGGGAGGAGGAACCTTCCTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      26055 30 +    779361 GTGGATTCCGGGGAGGAGGGATCTTCCTCT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     574350 30 -   1829203 GTGGATTTCGGAGAGGAAGAACCTTCCTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30743550 30 + 171630274 GTGGATTCCGGGGAGAAGAGACCTTCCTTC
i calJac3.chr4             C 0 I 248
s cebCap1.NW_016107755v1    1264115 30 -   1771730 GTGGATTCCGGGTAGGAGAGACCTTCCTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     449597 30 -    486031 GTGGATTCCGGGGAGGAGAGACCTTCCTCC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           607842 30 +  18854210 GTTGATTACTGGGAAGAGGGGCCTTCATCC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T

a score=49033.000000
s hg38.chr6_GL000254v2_alt  1797575 6 +   4827813 CTGGAA
s panTro5.chr6             30643751 6 + 175400573 CTGGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31067713 6 + 173848474 CTGGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     573054 6 +   2037526 CTGGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75275126 6 + 122973662 CTGGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31149030 6 + 172585720 CCAGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30441161 6 - 170955103 CCAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     695241 6 +   1495729 CCAGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     810619 6 -    863181 CCAGAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29991424 6 -  71996105 CTGGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      26085 6 +    779361 CTGGAA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     574380 6 -   1829203 CTGGAA
i colAng1.NW_012115577v1   C 0 I 29850
s cebCap1.NW_016107755v1    1264145 6 -   1771730 CTGGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     449627 6 -    486031 CTGGAA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           607872 6 +  18854210 CTGGAA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e calJac3.chr4             30743580 248 + 171630274 I

a score=21000.000000
s hg38.chr6_GL000254v2_alt  1797581 2 +   4827813 GC
s panTro5.chr6             30643757 2 + 175400573 GC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31067719 2 + 173848474 GC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     573060 2 +   2037526 GC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75275132 2 + 122973662 GC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31149036 2 + 172585720 GC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30441167 2 - 170955103 GC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     695247 2 +   1495729 GC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     810625 2 -    863181 GC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29991430 2 -  71996105 GC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      26091 2 +    779361 GC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     604236 2 -   1829203 GC
i colAng1.NW_012115577v1   I 29850 C 0
s cebCap1.NW_016107755v1    1264151 2 -   1771730 GC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     449633 2 -    486031 GC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           607878 2 +  18854210 GC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e calJac3.chr4             30743580 248 + 171630274 I

a score=82710.000000
s hg38.chr6_GL000254v2_alt  1797583 8 +   4827813 AGCAGAAC
s panTro5.chr6             30643759 8 + 175400573 AGCAAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31067721 8 + 173848474 AGCAGAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     573062 8 +   2037526 AGCAGAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75275134 8 + 122973662 AGCAGAAC
i nomLeu3.chr1a            C 0 T 30631
s rheMac8.chr4             31149038 8 + 172585720 AGCAGAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30441169 8 - 170955103 AGCAGAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     695249 8 +   1495729 AGCAGAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     810627 8 -    863181 AGCAGAAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29991432 8 -  71996105 TGCAGAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      26093 8 +    779361 AGCAGAAC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     604238 8 -   1829203 AGCAGAAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30743828 8 + 171630274 AGTAGAAC
i calJac3.chr4             I 248 C 0
s cebCap1.NW_016107755v1    1264153 8 -   1771730 AGCAGAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     449635 8 -    486031 AGCAGAAC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           607880 8 +  18854210 AGCGGAAC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T

a score=4230989.000000
s hg38.chr6_GL000254v2_alt  1797591 513 +   4827813 AAATTTCAGGGACTC----------------------------------------GGGAGTCCAAGGCCTCATTCC-AAAAACACTGAGAGATTGGGTACT-GGGCGCACAGTATGTCTGTGGGGT-C-ACGCAGACCTGGGAACCAGATCTTAGGGCCTGCAGACCTCCCTCTGCCTTGAGATCAGACTCCACCGCCA-GTAACTGGGAGGAAACATCTGTACTCCAGGATTTAGAGACAC-CGA-CACGGGAGCAGGGCG-CCCCC-------GTG-----TGCACAGAGCCCTGTTCTGCAGCTGGAAACCGAACGGGACCCTGTGGAAGTCGCGGGTGGGGAAGCGAAAGG---GGAGCTGAGC-GTCTGTCCTCAGTCCTTGGGCCACACGGGGGCGCTGCCGCTC-----------TGCGCTCGGATTC-TGATGA----GCCGCTCTGGAGAGGATGGGGCGGTGGTCTGAGTAAGACACAGATTGTTGATCCAGAAAGGATGTATCAATGAGGTGGGGCTGGGGTTGTCC-AGGGAGTGGAAAGGCCTTCTGAGAAGCCCT-GGACTGCGCGGGGTTCCGGCTCTGC
s panTro5.chr6             30643767 497 + 175400573 AAATTTCAGGGACTC----------------------------------------GGGAATCCAAGGCCTCATTCC-AAAAACACTGAGAGATTGGGTACT-GGGCGCACAGTGTGTCTGTGGGGT-T-ACGCAGACCTGGGAACCAGATCTTAGGGCCTGCAGACCTCCCTCTGCCTTAAGATCAGACTCCACCGCCA-GTAACTGGGAGGAAACATCTGTACTCCAGGATTTGGAGACAC-CGA-CACGGGAGCAGGGCG-CCCCC----------------------------GTTCTGCGGCTGGAAACCGAACGGGACCCTGTGGAAGTCCCGGGTGGGGAAGCGAAAGG---GGAGCTGAGT-GTCTGTCCTCAGTCCTTGGGCCACACCGGGGCGCTGCCGCTC-----------TGCGCTCGGGTTC-TGATGA----GCCGCTCTGGAGAGGACGGGGCGGTGGTCTGAGTAAGACACAGATTGTTGATCCAGAAAGGATGTATCAATGAGGTGGGGCTGGGGTTGTCC-AGAGGGTGGAAAGGCCTTCTGAGAAGCCCT-GGACTGCGCGGGGTTCTGGCTCTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31067729 513 + 173848474 AAATTTCAGGGACTC----------------------------------------GGGAGTCCAAGGCCTCATTCC-AAAAACACTGAGAGATTGGGTACT-GGGCGCACAGTATGTCTGTGGGGT-T-ACGCAGACCTGGGAACCAGATCTTAGGGCCTGCAGACCTCCCTCTGCCTTGAGATCAGACTCCACCGCCA-GTAACTGGGAGGAAACATCTGTACTCCAGGATTTGGAGACAC-CGA-CACGGGAGCAGGGCG-CCCCC-------GTG-----TGCACAGAGCCCTGTTCTGCGGCTGGAAACCGAACGGGACCCTGTGGAAGTCGCGGGTGGGGAAGCGAAAGG---GGAGCTGAGT-GTCTGTCCTCAGTCCTTGGGCCACACCGGGGCGCTGCCGCTC-----------TGCGCTCGGGTTC-TGATGA----GCCGCTCTGGAGAGGACGGGGCGGTGGTCTGAGTAAGACACAGATTGTTGATCCAGAAAGGATGTATCAATGAGGTGGGGCTGGGGTTGTCC-AGGGGGTGGAAAGGCCTTCTGAGAAGCCCT-GGACTGCGCGGGGTTCTGGCTCTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     573070 513 +   2037526 AAATTTCAGGGACTC----------------------------------------GGGAGTCCAAAGCCTCATTCC-AAAAACACTGAGAGATTGGATACT-GGGCGCACAGTATGTCTGTGGGGT-T-ACGCAGACCTGGGAACCAGATCTTAGGGCCTGCAGACCTCCCTCTGCCTTGAGATCAGACTCCACCGCCA-GTAACTGGAAGGAAACATCTGTACTCCAGGATTTGGAGACAC-CGA-CACGGGAGCAGGGCG-CCCCC-------GTG-----TGCACAGAGCCCTGTTCTGCGGCTGGAAACCGAACGGGACCCTGGGGAAGTTGCGGGTGGGGAAGCGAAAGG---CGAGCTGAGT-GTCTGTCCTCAGTCCTTGGGCCACACGGGGCCGCTGCCGCTC-----------TGCGCTCGGGTTC-TGATGA----GCCGCTCTGGAGAGGACGGGGCGGTGGTCTGAATAAGACACAGATTGTTGATCCAGAAAGGATGTATCAATGAGGTGGGGCTGGGGTTGTCC-AGGGGGTGGAAAGGCCTTCTGAGAAGCCCT-GGACTGCGCGGGGTTCCGGCTCTGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75244511 510 + 122973662 AATTTTCAGGGACTC----------------------------------------AGGAGTCCAAGGCCTCATTCC-AAAAACACTGAGAGATTGAGTACT-GGGCGCACAGTATGTCTGTGGGGT-C-ACGCGGACCTGGGAACCAGATCTTAGGGCCTGCAGACCTCCCTCTGCCTTGAGATCAGAATCCACCGCCA-GTAACTGGGAGGAAACATCTGTACTCCAGGATTTGGAGACAC-CGA-CGCGGGAGCCGGGCG-CTCCC-------GTA-----TGCACAGAGCCC-ATTCTGCAGCTGGGAACCAAACGGGACCCTGTGGAAGTCGCGGGTGGGGAAGCGAAAGG---AGAGCTGAGT-GTCTGTCCTCAGTCCTTCGGCCACACGGGGGCGCTGCCGCTC-----------TGCCCTCGGGTTC-TGATGA----GCCGCTCAGGAGAGGACGGGGCGGTGGTCTGAGTAAG--ACAGATTGTTGATCCAGAAAGGATGTATCAGTGAGGTGGGGCTGGGGTTGTCC-CGGGGGTGGAAAGGCCTTCTGAGAAGCCCT-GGACTGCGCGGGGTTGCGGCTCTGC
i nomLeu3.chr1a            T 30631 C 0
s rheMac8.chr4             31149046 513 + 172585720 AAATTTCAGGGACTC----------------------------------------GGGAGTCCAAGGCCTCATTCCAAAAAACACTGAGAGATTGCGTACT-GGGCGCACAGTATGTCTGTGGGGT-C-ACACGGACCCGGGAACCAGATCTTAGGGCCCGCAGGCTTCCCTCTGCCTTGAGATCAGAGTTCACCGCCA-GTAACTGTGAGGAAACATCTGTACTCCAGGATTTGGAGACAC-CGA-CGCGGGAGCCGGGCG-CCCG--------GTG-----TGCACAGAGCCCTGTTCTGCAGCTGGGAACCCAGCGGAACTCTGTGGAAGTCGCCGGTGGGGAAGCTAAAGG---GGACCTGAGT-GTCTGTCCTCAGTCCTTCGGCCACACGGGGGCGCTGCCGCTA-----------TGCGCTCGGGTTC-TGATGA----GCCGCTCTGGAGAGGACTGGTCCGTGGTCTGAGTAAGACAGAGATTGTTGATCCAGAAAGGATGTATCAATGAGGTGGGGCTGGGGTTGTCC-CGGCGGTGGAAAGGCCTTCTGAGAAGCCCT-GGACCGGGCGGGGTTCCGGTTCTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30441177 513 - 170955103 AAATTTCAGGGACTC----------------------------------------GGGAGTCCAAGGCCTCATTCCAAAAAACACTGAGAGATTGCGTACT-GGGCGCACAGTATGTCTGTGGGGT-C-ACACGGACCCGGGAACCAGATCTTAGGGCCCGCAGGCTTCCCTCTGCCTTGAGATCAGAGTTCACCGCCA-GTAACTGTGAGGAAACATCTGTACTCCAGGATTTGGAGACAC-CGA-CGCGGGAGCCGGGCG-CCCC--------GTG-----TGCACAGAGCCCTGTTCTGCAGCTGGGAACCCAGCGGAACCCTGTGGAAGTCGCCGGTGGGGAAGCTAAAGG---GGACCTGAGT-GTCTGTCCTCAGTCCTTCAGCCACACGGGGGCGCTGCCGCTA-----------TGCGCTCGGGTTC-TGATGA----GCCGCTCTGGAGAGGACTGGTCGGTGGTCTGAGTAAGACAGAGATTGTTGATCCAGAAAGGATGTATCAATGAGGTGGGGCTGGGGTTGTCC-CGGGGGTGGAAAGGCCTTCTGAGAAGCCCT-GGACCGGGCGGGGTTCCGGTTCTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     695257 513 +   1495729 AAATTTCAGGGACTC----------------------------------------GGAAGTCCAAGGCCTCATTCCAAAAAACACTGAGAGATTGCGTACT-GGGCGCACAGTATGTCTGTGGGGT-C-ACACGGACCCGGGAACCAGATCTTAGGGCCCGCAGGCTTCGCTCTGCCTTGAGATCAGAGTTCACCGCCA-GTAACTGTAAGGAAACATCTGTACTCCAGGATTTGGAGACAC-CGA-CGCGGGAGCCGGGCG-CCCC--------GTG-----TGCACAGAGCCCTGTTCTGCAGCTGGGAACCGAGCGGGACCCTGTGGAAGTCGCCGGTGGGGAAGCTAAAGG---GGACCTGAGT-GTCTGTCCTCAGTCCTTCGGCCACACGGGGGCGCTGCCGCTA-----------TGCGCTCGGGTTC-TGATGA----GCCGCTCTGGAGAGGACCGGGCAGTGGTCTGAGTAAGACAGAGATTGTTGATCCAGAAAGGATGTATCAATGAGGTGGGGCTGGGGTTGTCC-CGGGGGTGGAAAGGCCTTCTGAGAAGCCCT-GGACCGGGCGGGGTTCCGGTTCTGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     810635 514 -    863181 AAATTTCAGGGACTC----------------------------------------GGGAGTCCAAGGCCTCATTCCAAAAAACACTGAGAGATTGCGTACT-GGGCGCACAGTATGTCTGTGGGGT-C-ACACGGACCCGGGAACCAGATCTTACGGCCCGCAGGCTTCCCTCTGCCTTGAGATCAGAGTTCACCGCCA-GTAACTGTGAGGAAACATCTGTACTCCAGGATTTGGAGACAT-CGA-CGAGGGAGCCGGGCG-CCCCT-------GTG-----TGTACAGAGCCCTGTTCTGCAGCTGGGAACCGAGTGGGACCCTGTGGGAGTCGCCGGTGGGGAAGCTAAAGG---GGACCTGAGT-GTCTGTCCTCAGTCCTTCGGCCACACGGGGGCGCTGCCGCTA-----------TGCGCTCGGGTTC-TGATGA----GCCGCTCTGGAGAGGACGGGGCAGTGGTCTGAGTAAGACAGAGATTGTTGATCCAGAAAGGATTTATCAATGAGGTGGGGCTGGGGTTGTCC-CAGGGCTGGAAAGGCCTTCTGAGAAGCCCT-GGACCGGGCGGGGTTCCGGTTCTGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29991440 513 -  71996105 AAATTTCAGGGACTC----------------------------------------GGGAGTCCAAGGCCTCATGCCAAAAAACACTGAGAGATTGCGTACT-GGGCGCACAGTATGTCTGTGGGGT-C-ACACGGACCCGGGAACCAGATCTTAGGGCCCGCAGGCTTCCCTCTGCCTTGAGATCAGAGTCCACCGCCA-GTAACTGTGAGGAAACATCTGTACTCCAGGATTTGGAGACAC-CGA-CGCGGGAGCCGGGCG-CCCC--------GTG-----TGCACAGAGCCCTGTTCTGTAGCTGGGAACCGAACGGGACCCTGTGGAAGTCGCGGGTGGGGAAGCTAAAGG---GGACCTGAGT-GTCTGTCCTCAGTCCTTCGGCCACACGGGGGCGCTGCCGCTA-----------TGCGCTCGGGTTC-TGACGA----GCCGCTCTGGAGAGGACTGGTCGGTGGTCTGAGTAAGACAGAGATTGTTGATCCAGAAAGGATGTGTCAATGAGGTGGGGCTGGAGTTGCCC-AGAGGGTGGAAAGGCCTTCTGAGAAGCCCT-GGACCAGGCGCGGTTCCGGTTCTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      26101 525 +    779361 AAATTTCAGGGACTCCAAGGCCTCGTTCCAAAAACACTGAGAGTCCAAAAACACTGAGAGTCCAAGGCCTCATTCC-AAAACCACTGAGAGGCTGCGTACT-GGGAGCACAGTATGTCTATGGGGTCC-ACCCGGACTCGTGAACCAGGTCTTAGGACCTGCAGAGCTCCCTCTGCCTTGAGGGCAGAGTCCACCGCCA-CTAACTGGGAAAAAACATCTGT-------------------------CGCGGGACGGGGTCGACCCC--------ATG-----TGCACAGAGCCCTGTTCCGCGGCCGAGATCCGAAGAGGACCCTAGGGAGGTCCCAGGTGGGGAAGAGAAAGG---GGAGCTGAGT-GCCTGTCTTCAGTCCTTCGGCCACACGGGGGCGCTGCCGCTA-----------TGCGCTTGGTTTC-TGATTA----GCCCCTCTGGAGAGGACCGGGCGGCGGTC----TAAGACAGAGATTGTTGACCCAGAAAGGATGTATCAGTGAGGTGGGGCTGGGGTTGTCCAAGGGGGTGGAAAGGCTTTCT---AAGCCCT-GGACTGCGCGGGGTTCCAGTTCTGC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     604246 512 -   1829203 AAATTTCAGGGACTC----------------------------------------AGGAGTCCAAGGCCTCATTCC-AAAAACACTGAGAGATTGGGTACT-GGGCGCACAGTATGTCTGTGGGGT-C-ACACGCGCCTGGGAACCAGATCTTAGGGCCCGCAGGCTTCCCTCTGCCTTGAGATCAGAGTCCACCGCCA-GTAAGTGTGAGGAAACATCTGTACTCCAGGATTTGGAGACAC-CGA-CGCGGGAGCCGGACG-CCCC--------GTG-----TGCACAGAGCCCTGTTCTGCAGCTGGGAACCGAACGGGACCCTGTGGAAGTCGCGGGTGGGGAAGCTAAAGG---GGACCTGAGT-GTCTGTCCTCAGTCCTTCGGCCACACGGGGGCGCTGCCGCTA-----------TGCGCGCGGGTTC-TGATGA----GCCATTCTGGAGAGGACCGGGCGGTGGTCTGAGTAAGACAGAGATTGTTGATCCAGAAAGGATGTACCAATGAGGTGGGGCTGGGGTTGTCC-CGGGGGTGGAAGGGCCTTCTGAGAAGCCCT-GGACCGGGCGGGGTTCCGGTTCTGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30743836 508 + 171630274 AAATTTCAGGGACTC----------------------------------------GAGGGTCCAAGACCTTATTCC-AAAAACGCTGAGAGATTGCGTACT-GGGAGCACAGTAAGTCTGTGGGGT-CCACCGGGACCTAGCAACCAGATCTTAGAGCCTGCAGACCTCCCTCTGCCTTCAGGTCAGAGTCCACCACCA-CTAACTGGGAGGAAACAGCTGTGCTCTAGGATTTGGAGAAAC-CCGACGCGGGACCCGGGCG-CCCCG-------GTG-----TACACGGAGCCCGGTTCTGCAGCTGGGAACCGAAGGGGACCCTGGGGAGGTCCCGGGTGG------AAAATG---GGAGGTGAGT-GTCTGTCCTCAGTCCTTCGGCCACACGGGGGCGCTGCCGCTC-----------TGCGCTCTGGTTC-TGATGA----GCTGCTCCAGAGAGGTCGGGGCGGTGATGTGAGTAGGGCAGAGATTGTTGATCCAGAACGGATGCATCAATGAGGTGGGGCT-AGGGTGACC-AGTGGGTGGAAAGGCCTTCTGAGAAGCCCT-GGACTGCGCGGGGTTCCGGGTCTGC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1264161 497 -   1771730 AAATTTCAGGGACTC----------------------------------------GGGAGTCCAAGGCCTCTTTCC-AAAAACACTGAGAGATTGCGTACT-GGGAGCGCAGTATGTCTGTGGGGT-CAGTCCCGACCTGGGAACCAGATCTTAG-GCCTGCAGACCTCCCTCTGCCTTGAGGTCGGAGTGCACCGCCT-CTAACTGGGAGGAAAAATCTGT-------------------------CGCGGGACGGGGTCG-CCCCG-------ATG-----TGCACAGAGGCCTGTTCTGCAGCTGGGAACCGAAGGGGACCCTGGGGAGGTCCCGGTGGGG-AAGCGAAAGG---GGAGCTGAGT-GCCTGTCCTCAGTCCTTCGGCCACACGGGGGcgctcccgctcccgctcccgctcccgctcGGGTAC-TGAGGA----GCCGCTCGGAAGAGGAC-CGGCATTGGTCTACGTAGAGCAGAGACTGTTGATCCGGAAAGGATGCATCAATGAGGTGCGGCT-GGGGTGACC-AG-AGGTGGAAAGGCCTTCTGAGAAGTCCT-GGACTGCGCGGGGTTCCGGCTCTGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     449643 491 -    486031 AAATTTCAGGGACTC----------------------------------------GGGAGTCCAAGGCCTCATTCC-AAAAACACTGAGAGATTGCGTACT-GGGAGCACAGTATGTCTGTGGGCT-CAACCCCGACCTGGGAACCAGATCTTAGGGCCTGCAGACCTCCCTCTGCCTTGAGGTCGGAGTTCACCGCCT-CTAACTGGGAGGAAAAATCTGT-------------------------CGCGGGACGGGGTCG-CCCCC-------ATG-----TGCACAGAGGCCTGTTCTGCAGCTGGGAACCGAAGGGGACCCTGGGGAGGTCCCGGGTGGGTTAGCGAAAGG---GGAGCTGAGT-GTCTGGCCTCATTCCTTCGGCCACACGGGGGCGCTGCCGCTC-----------CGAGCTCGGGTAT-TGAGGA----GCCGCTCGAAAGAGGACCCCGCATTGGGCTACGTAGAGCAGAGATTGTTGATCCAGAAAGGATGCATCAATGAGGTGGGGCTGGGGGTGGCC-AGGGGGTGGAAAGGCGTTCTAAGAAGCCCT-GGACTGCGCGGGGTTCCGGCTCTGC
i aotNan1.NW_018496901v1   C 0 T 83973
s otoGar3.GL873550           607888 501 +  18854210 AAGTTTTAGGGACTC----------------------------------------CAGCGCCCAAAGTCTCATTCC-CAAAACACCGAGAGATTGGATACTGGGGCACACAGTGTGTTTGTGGGGT-CCACCAGGACCTGGGAATCCAGCTTCAGGGCATGCGGAC-TCCCTTTCCCTCGAGGCGAGAATCCACTGTCACCCAACGGAGAGGAA--AGCTATCAGCTTGAATTTTGAGAAACTTGA-CACCGGACGTGAGTG-CCTCCTCCCCCCATGCCCCCTGTACAAAGTCCGGTCCTCCACCTGGGAGCCAAAGGAGATCCTGGAGAGGCTCCCG-------AGTTGAAGGTTTAGAGCTGAGTAGTCTGTCCTCAGTTATTTGGCTACACGGGGGCGCTGCCGCTG-----------CGTTCTCCAACTCTTGATGAGCTGGCTGCTGCGAAGAGCACCGGGCTGTGGTCTGAGT-----AGAGGTTGCTGATCCAGAGAGGATGCATCA------------------------AGGGGATGGAAAGGCCTTCTGAGAAGCCCTCCAACTCGGCAAGGCTCAGGCTCTAG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T

a score=535392.000000
s hg38.chr6_GL000254v2_alt  1798104 60 +   4827813 GGAACAGAGGAGGGCTCTGGAGCGGCCTGTCTCTGAGGTTTCCAACTCCT-CCTTGCAAAC
s panTro5.chr6             30644264 60 + 175400573 GGAACAGAGGAGGGCTCTGGAGCTGCCTGTCTCTGAGGTTTCCAACTCCT-CCTTGCAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31068242 60 + 173848474 GGAACAGAGGAGGGCTCTGGAGCTGCCTGTCTCTGAGGTTTCCAACTCCT-CCTTGCAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     573583 60 +   2037526 GGAACAGAGGAGGGCTCTGGAGCTGCCTGTCTCTGAGGTTTCCAACTCCT-CCTTGCAAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75245021 60 + 122973662 GGAACAGAAGAGGGCTCTGGAGCTGCCTGTCTCTGAGGTTTCCAACTCCT-CCTTGCAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31149559 60 + 172585720 GGAACAGAGGAGGGCTCTGGAGCTGCCTGTCTCTGAGGTTTCCAACTCCT-CCTTGCAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30441690 60 - 170955103 GGAACAGAGGAGGGCTCTGGAGCTGCCTGTCTCTGAGGTTTCCAACTCCT-CCTTGCAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     695770 60 +   1495729 GGAACAGAGGAGGGCTCTGGAGCTGCCTGTCTCTGAGGTTTCCAACTCCT-CCTTGCAAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     811149 60 -    863181 GGAACAGAGGAGGGCTCTGGAGCTGCCTGTCTCTGAGGTTTCCAACTCCT-CCTTACAAAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29991953 39 -  71996105 GGAACAGAGGAGGGCTCTGGAGCTGCCTGT----------------------CTTGCAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      26626 60 +    779361 GGAACAGAGGTGGGCTCTGGAGCTGCCTGTCTCTGAGGTTTCCAACTCCT-CCTTGCAAAC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     604758 60 -   1829203 GGAACAGAGGAGGGCTCTGGAGCTGCCTGTCTCTGAGGTTTCCAACTCCT-CCTTGCAGAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30744344 60 + 171630274 AGAGGAGAGGAGAGCTCTGGAGCTGCCTGTCTCTGAGGATTCCCGCTCTT-CCTTTCAAAC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1264658 58 -   1771730 AGAGGAGAGGAGAGCTCTGGAGCTGCCTGACTC--AGGTTTGCCGCGCCT-CCTTACCAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     366161 60 -    486031 AGAGGAGAGGAGAGCTCTGGAGCTGCCTGTCTCTGAGGTTTCCCGCTCCT-CCTTTCAAAC
i aotNan1.NW_018496901v1   T 83973 I 83971
s otoGar3.GL873550           608389 61 +  18854210 GGAGGAAAGGAGAGCTCTACAGCTGCCCGTCTCTAAGGTTTCTAGCTCCTCCCTTGCAAAC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T

a score=393870.000000
s hg38.chr6_GL000254v2_alt  1798164 42 +   4827813 CCTCCCTCCAGCCTTTTCA-TGGCAACACTCCAGGAAAATGGA
s panTro5.chr6             30644324 42 + 175400573 CCTCCCTCCAGCCTTTTCA-TGGCAACACTCCAGGAAAATGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31068302 42 + 173848474 CCTCCCTCCAGCCTTTTCA-TGGCAACACTCCAGGAAAATGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     573643 42 +   2037526 CCTCCCTCCAGCCTTTTCA-TGGCAACACTCCAGGAAAATGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75245081 42 + 122973662 CCTCCCTGCAGCCTTTTCA-TGGCAACACTCCAGGAAAATGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31149619 42 + 172585720 CCTCTCTCCAGCCTTTTCA-TGGTAACACTCTAGGAAAATGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30441750 42 - 170955103 CCTCTCTCCAGCCTTTTCA-TGGTAACACTCTAGGAAAATGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     695830 42 +   1495729 CCTCTCTCCAGCCTTTTCA-TGGTAACACTCTAGGAAAATGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     811209 42 -    863181 CCTCTCTCCAGCCTTTTCA-TGGTAACACTCTAGGAAAATGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29991992 42 -  71996105 CCTCTCTCCAGCCTTTTCA-TGGTAACACTCTAGGAAAATGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      26686 42 +    779361 CCTCTCTCCAGCGTTTTCA-TAGCAACACTCCAGGAAAATGGA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     604818 40 -   1829203 CCTCTCTCCAGCCTTTTCA-TG--AACACTCCAAGAAAATGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30744404 42 + 171630274 CCTCTCTCCAACCTTTTGA-TGGCAACACTCCAGGAAAATGGA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1264716 42 -   1771730 GCTCTCTCCAGCCTTTTGA-TGGCAACACTCCAGGAAAATGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     450192 43 -    486031 CCTCTCTCCAGCCTTTTGACTGGCAACACTCCAGGAAAATGGA
i aotNan1.NW_018496901v1   I 83971 T 83972
s otoGar3.GL873550           608450 39 +  18854210 ---ACCTCTGGCCCTTTGA-TGGCAACATTCCAGGGAAAGGAA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T

a score=3313016.000000
s hg38.chr6_GL000254v2_alt  1798206 364 +   4827813 AAGTTGATCA-TTTTTTTCTTCCACTCCTTAATCCTTTCCTGACTGCTACttttaaataattttattttagaagagttttaaatttacataaaagttgcaatggtagtacagagttgccatccgctccacagtcagtttcccctgatgttaacatctctcattactatggtccatttgtcacagctaatgaagccattttcataccttatta-t------tactaaactgcagactttatttggagttcattagcgttcccctaatgtcctttctgtgtttcaggattccatggagaatatcacactacatttagtctccgtcgtgcctccgcggcatcctctggtctgtgacagttcctgagattttccta
s panTro5.chr6             30644366 364 + 175400573 AAGTTGATCA-TTTTTTTCTTCCACTCCTTAATCCTTTCCTGACTTCTACttttaaataattttattttagaagagttttaaatttacataaaagttgcaatggtagtacagagttgccatccgctccacagtcagtttcccctggtgttaacatctctcattactatggtccatttgtcacagctaatgaagccattttcataccttatta-t------tactaaactgcagactttatttggagttcattagcgttcccctaatgtcctttctgtgtttcaggattccatggagaatatcacactacatttagtctccgtcgtgcctccgcggcatcctctggtctgtgacaattcctgagattttccta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31068344 364 + 173848474 AAGTTGATCA-TTTTTTTCTTCCACTCCTTAATCCTTTCCTGACTGCTACttttaaataattttattttagaagagttttatatttacataaaagttgcaatggtagtacagagttgccatccgctccacagtcagtttcccctggtggtaacatctctcattactatggtccatttgtcacagctaatgaagccattttcataccttatta-t------tactaaactgcagactttatttggagttcattagcgttcccctaatgtcctttctgtgtttcaggattccatggagaatatcacactacatttagtctccgtcgtgcctccgcggcatcctctggtctgtgacaattcctgagattttccta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     573685 364 +   2037526 AAGTTGATCA-TTTTTTTCTTCCACTCCTTAATCCTTTCCTCACTGCTACttttaaataattttagtttagaagagttttaaatttacataaaacttgcaatggtagtacagagttgccatccgctccacagtcagtttcccctggtgttaacatctctcattactatggtccatttgtcacagctaatgaagccattttcataccttatta-t------tactaaactgcagactttatttggagtttattagcgttcccctaatgtcctttctgtgtttcaggattccatggagaatatcacactacatttagtctccgtcgtgcctccgcggcatcctctggtctgtgacagttcctgagattttccta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75245123 365 + 122973662 AAGTTGATCA-TTTTTTTCTTCCACTCCTTAATCCTTTCCTGAGTGCTAtttttaaataattttattttagaagagttttaaatttacataaaagttgcagtggtagtacagagttgccatccgctccacagtcagtttcccctcctgttaacatctctcattactgtggtccatttgtcacagctagtgaaggcattttcataccttattatt------tgctaaactgcagactttatttggagttcattagcattcccctaatgtcctttctgtgttccaggattccacggagaatatcacattacatttagtctccttcgtgcctccgcggccttctctggtctgtgacagttcctgagattttccta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31149661 363 + 172585720 AAATTGATCA-TTTTTTTCTTCCACTCCTTAATCCTTTCCTGAGTGCTACttttaaataattttattttagaagagttttaaatttacgtaaaagctgcaatggtagtacagagttgccatccgctcc--agtcagtttcccctggtgtgaacatctctcattcctatggtccgtttgtcacagctaatgaagccattttcataccttattatt------tacgaaactgcagactttatttggagttcattagcgttcccctagtgtcctttctgtgttccaggattccatcgagaatatcacattacatttagtctccttcatgcctccttggcctcctctggtctgtgatagttcctgagattttccta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30441792 363 - 170955103 AAATTGATCA-TTTTTTTCTTCCACTCCTTAATCCTTTCCTGAGTGCTACTTTTaaataattttattttagaagagttttaaatttacgtaaaagctgcaatggtagtacagagttgccatccgctcc--agtcagtttcccctggtgtgaacatctctcattcctatggtccgtttgtcacagctaatgaagccattttcataccttattatt------tacgaaactgcagactttatttggagttcattagcgttcccctagtgtcctttctgtattccaggattccatcgagaatatcacattacatttagtctccttcatgcctccttggcctcctctggtctgtgatagttcctgagattttccta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     695872 363 +   1495729 AAATTGATCA-TTTTTTTCTTCCACTCCTTAATCCTTTCCTGAGTGCTACttttaaataattttattttagaagagttttaaatttacgtaaaagctgcaatggtagtacagagttgccatccgctcc--agtcagtttcccctggtgtgaacatctctcattcctatggtccgtttgtcacagctaatgaagccattttcataccttattatt------tacgaaactgcaaactttatttggagttcattagcgttcccctagtgtcctttctgtgttccaggattccatcgagaatatcacattacatttagtctccttcatgcctccttggcctcctctggtctgtgatagttcctgagattttccta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     811251 363 -    863181 AAATTGATCA-TTTTTTTCTTCCACTCCTTAATCCTTTCCTGAGTGCTACttttaaataattttattttagaagagtttttaatttacgtaaaagctgcaatggtagtacagagttgccatccgctcc--agtcagtttcccctggtgtgaacatctcgcattcctatggtccgtttgtcacagctaatgaagccattttcataccttattatt------tacgaaactgcagactttatttggagttcattagcgttcccctagtgtcctttctgtgttccaggattccatcgagaatatcacattacatttagtctccttcatgcctccttggcctcctctggtctgtgatagttcctgagattttccta
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29992034 364 -  71996105 AAATTGATCATTTTTTTTCTTCCACTCCTTAATCCTTTCCTGAGTGCTACTTTTaaataattttattttagaagagttttaaatttacgtaaaagctgcaatggtagtacagagttaccatccgctcc--agtcagtttcccctggtgtgaacatctctcattcctatggtccgtttgtcacagctaatgaagccattttcataccttattatt------tactaaactgcagactttatttggagttcattagcgttcccctaatgtcctttctgtgttccaggattccatcgagaatatcacattacatttagtctccttcatgcctccttggcctcctctggtctgtgatagttcctgagattttccta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      26728 371 +    779361 AAGTTGATCA-TTTTTTTCTTCCACTCCTTAATCCTTTCCTGAGTGCTACttttaaataattttattttagaagagttttaaatttacataaaagttgcaaaggtagtacagagttgccatccgctccatagtcggtttcccctggtgtgaacatctcgcattattatggtccatttgtcacagctaatgaagccattttcgcaccttattattactaaataataaactgcagtctttatttggagttaattagcgttcccctaatgtcctttctgtgttccaggattccatcgagaatatcacattacatttagtctccttcatgcctccttggcctcctctggtctgtgatagttcctgagatattccta
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     604858 360 -   1829203 AAATTGATCA--TTTTTTCTTCCACTCCTTAATCCTTTCCTGAGTACCACttttaaataattttattttagaagagttttaaatttacgcaaaagctgcaatggtattacagagttgccatccgctcg--a--cagtttcccctagtgtgaacatctctcattcctatggtccgtttgttacagctaatgaagccattttcataccttattatt------tactaaactgcagactttatttggagttcattagcgttcccctaatgtcctttctgtgttccaggattccatcgagaatatcactttacatttagtctccttcatgcctccttggcctcctctggtctgtgacagttcctgagattttccta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30744446 358 + 171630274 AAATTGATCA-TCTTTTTCTTCCACTCCTCAATCCTTTAGTGAGTGCTACTTTTGaataattttattttaagagagttttaaatttacgtaaaagttgcaaaagtactacagagctgccatcctctctacagtcagtttcccctggtgctaacatcttgcattact-------atttgtcagagctaatcaagtcattttgatgccttattatt------tactaaactgcagactttatttggagttcactagcgttcccctaatgtcctttccgtgttctgggattccatccagaatatcacattacatttagtgtccttcatgcctcctcggcctcctctggtctgtgatagttcctgagattttccta
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1264758 359 -   1771730 AAATTGATCA-TCTTTTTCTTCCACTCCTTAATTCTTTACTGAGTGCTGCttttaaataattgtattgtagaagagttttaaatttacataaaagttgccaaggtagtacagagttgccatcctctccacagtcagcttcccctggtgctaacatctcgcattgctgt-gtccatttgtcacagctaattaagctattttgataccttattatt------taataaacgggagac--tatttggagttcatgagcgttcccctgatgtcctttctgtgttccaggattccaccgagaatatcacattacgtttagt---ctccatgcccccttgccctcctctggtgtgtggccgtccctgaggttttccta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     366263 364 -    486031 AAATTGATCA-CTTTTTTCTTCCACGCCTTAATCTTTTCCTGAGATCTACttttaaataattttattttaggagagttttaaatttacataaaagttgccaaggtagtacagagttgccgtcctctccacagtcagcttcccctggtgctaacatctcgcattactatggtccatttgtcgcagctaat-aagccattttgataccttattatt------gactaaactgcagactttatttagagctcattagcgttcccctaacgtcatttccatgttccaggattccatcgagaatatcacgttacatttagtctccttcatgcctcctcggcctcctctggtgtgtggcagttcctgaggttttccta
i aotNan1.NW_018496901v1   T 83972 C 0
s otoGar3.GL873550           608489 350 +  18854210 AAGTACATCT-TTTTTTCTTT---CTTCTTATTCCTTTCCTCAGTGCTGtttttaaataattttattttaaaagagtttttaatttaca-gaaagttgcaaaagtagcacaatgttgccatactctc---acactgtttcctctgttgtgaacatcttgcctttctgtgatacatttgttgcaactaatgaagcagtactgatacattattg-t------tac-------cttactttatttggagttcattagttttctcttaatgtccttcctctgttctagaattccatccagaatatcactttacatttagtcccctgcatgtttcctctgccttctcttatctgtgactgtttctcagattttccta
i otoGar3.GL873550         C 0 I 257
e mm10.chr17               58756926 415 -  94987271 T

a score=1965297.000000
s hg38.chr6_GL000254v2_alt  1798570 220 +   4827813 atttttgatgcccttcacaatattgggaagtactgaccagatatattgtaaaatgtccctcaaactgaatttagttggggtgtagatcatg----gttagactatggttatggg-tgtttag-atgaggtgaagtgctattctccaaacaccttatcaaggttatagaatatcaatttcatgtaccactgttgatgttgaagttgatcacctggtatattagcttc
s panTro5.chr6             30644730 220 + 175400573 atttttgatgcccttcacaatatttggaagtactgaccagatatattgtaaaatgtccctcaaactgaatttagttgggatgtagatcatg----gttagactatggttatggt-tgtttag-atgaggtgaagtgcaattctccaaacaccttatcaaggttatagaatatcaatttcatgtaccactgttgatgttgaagttgatcacctggtatattagcttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31068708 219 + 173848474 atttttgatgcccttcacaatatttggaagtactgaccagatatattgt-aaatgtccctcaaactgaatttagttgggatgtagatcatg----gttagactatggttatggt-tgtttag-atgaggtgaagtgcaattctccaaacaccttatcaaggttatagaatatcaatttcatgtaccactgttgatgttgaagttgatcacctcgtatattagcttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     574049 219 +   2037526 atttttgatg-ccttcacaatattgggaagtactgaccagatatattgtaaaatgtccctcaaactgaatttagttggggtgtagatcatg----gttagactatggttatggt-tgtttag-atgaggtgaagtgctattctccaaacaccttatcaaggttatagaatatcaatttcatgtaccactgttgatgttgaagttgatcacctggtatattagcttc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75245488 220 + 122973662 atttttgatgcccttcacaatattaggaagtactggccagatatattgtaaaatgtccctcaaactgaatttaattggggtttagatcatg----attagactatggttatgga-tgtttag-atgaggtgaattgctattctccaaacaccttatcaaggttatagaatatcaatttgatgtaccactgttgatgttgaagttgatcacctggtatattagcttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31150024 220 + 172585720 attttttatacctttcacaatattgggaagaactgaccagatatattgtaaaatgtccctcaaactgaatttatttggggtttagatcatg----gttagactacggttatgga-tgtttag-atgaggtgaagtgcgattctccaaacactttgtcaaggttatagaatatcaatttgatgtaccactgttgttgttgaagttgatcacctggTATATTAGCTTC
i rheMac8.chr4             C 0 I 21245
s macFas5.chr4             30442155 220 - 170955103 attttttatacccttcacaatattgggaagaactgaccagatatattgtaaaatgtccctcaaactgaatttatttggggtttagatcatg----gttagactacggttatgga-tgtttag-atgaggtgaagtgcgattctccaaacactttgtcaaggttataaaatatcaatttgatgtaccactgttgttgttgaagttgatcacctggTATATTAGCTTC
i macFas5.chr4             C 0 I 21246
s macNem1.NW_012012100v1     696235 220 +   1495729 attttttatgcccttcacaatattgggaagaactgaccagatgtattgtaaaatgtccctcaaactgaatttatttggggtttagatcatg----gttagactacggttatgga-tgtttag-atgaggtgaagtgcgattctccaaacactttgtcaaggttatagaatatcaatttgatgtaccactgttgatgttgaagttgatcacctggTATATTAGCTTC
i macNem1.NW_012012100v1   C 0 I 23698
s cerAty1.NW_012002535v1     811614 220 -    863181 atttttgatgcccttcacaatattgggaagaactgaccagatatattgtaaaatgtccctcaaactgaatttatttggggtttagatcatg----gttagactatggttatgca-cgtttag-atgaggtgaagtgcgattctccaaacactttgtcaaggttatagaatatcaatttgatgtaccactgttgttgttgaagttgatcacctggTATATTAGCTTC
i cerAty1.NW_012002535v1   C 0 I 23415
s chlSab2.chr17            29992398 220 -  71996105 atttttgatgcccttcacaatattgggaagaactgaccagatatattgtaaaatgtccctcaaactgaatttatttggggtttagatcatg----gttagactacggttatgga-tgtttag-atgaggtgaagtgcgattctccaaacactttgtcaaggttatagaatatcaatttgatgtaccactgttgttgttgaagttgatcacctggTATATTAGCTTC
i chlSab2.chr17            C 0 I 21417
s manLeu1.NW_012106264v1      27099 223 +    779361 atttttgatgcccttcacaattttgggaagtactgaccagatgtattgtaaaatgtccctcaagttgaatttagttaaggtttagatcatggctagttggactatggttatgga-tgtttag-atgaggtgaagtactattctccaaataccttatcaagagtatataatatcaatttgatgtaccactgttgatgttgaagttgaccatcC-ATATTTCAACttc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     605218 220 -   1829203 atttttgatgcccttcacaatattgggaagtactgaccagatatattgtaaaatgtccctcaaactgaatttatttgtcgtttagatcatg----gttagactatggttgtgga-cgtttag-atgaggtgaagtgcgattctccaaacactttgtcaaggttatagaatatcaatttgatgtaccactgttgatgttgaagctgatcacctagTATATTAGCTTC
i colAng1.NW_012115577v1   C 0 T 29841
s calJac3.chr4             30744804 221 + 171630274 atttttgatgcccttcacaattttgggatgtactgatcagatatactctaaaatttccctcaaattgaatttagttgaggtttagatcatg----attagacttcagttatagattttttag-atgaggtgaagtgcttttctccaaacactttatcaaggttctataatatcaatttgatgtgccactgttgatgttgaagttgatcacccggTATTCTGGCCtc
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1265117 218 -   1771730 atttttgatgcccttcacaatttggggaagtactgaccacatatattctgaaatgtccctcaaattgaatttagttgaggtttagatcatg----attagactacagttatagattttttac-atgaggtgaagtgcttctctccaaataccttgtcaaagttatataatatcaatttgatgtgccactgttgatgttgaagttgatcacc---tATTttagcctc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     366627 221 -    486031 atttttcatgcccttcacaatttggggaagtactgaccacacatattctgaaatgtccctcaaattaaattgagttgaggtttagatcatg----attagacttcagttatagattttttag-atgaggtgaagtgctcttctccaaacaccttatcaaggttatataatatcaatttgatgtgctactgttaatgttgaagttgaccacctggTATTttagcctc
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           609096 220 +  18854210 atttttgatatccttgataatttggaggagtactgatcaggcatgttgtaacatgaccctcaaattaagtttggttaatgtttagatcatg----gttagattggagtaatggg-tttggggaatgaagtgacgtgctattcttgaaacaacttatcaagggt-tataatatcaatttcattcatcactattgatattgaacttgatcacctagtatatttgtttc
i otoGar3.GL873550         I 257 C 0
e mm10.chr17               58756926 415 -  94987271 T

a score=412528.000000
s hg38.chr6_GL000254v2_alt  1798790 45 +   4827813 ctgtagctgccac-aacaaatgccctcaaagttggcaacttacaac
s panTro5.chr6             30644950 45 + 175400573 ctgtagctgccac-aacaaatgccctcaaagttggcaacttacaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31068927 45 + 173848474 ctgtagctgccac-aacaaatgccctcaaagttggcaatttacaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     574268 45 +   2037526 ctgtagctgccac-aacaaatgccctcaaagttggcagcttacaac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75245708 45 + 122973662 ctgtagctgccac-aacaaattccctcaaagctggcaacttaaaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31171489 45 + 172585720 ctgtagctgccac-aacaaatgccctcaaagctggcaacttaaaac
i rheMac8.chr4             I 21245 C 0
s macFas5.chr4             30463621 45 - 170955103 ctgtagctgccac-aacaaatgccctcaaagctggcaacttaaaac
i macFas5.chr4             I 21246 C 0
s macNem1.NW_012012100v1     720153 45 +   1495729 ctgtagctgccac-aacaaatgccctcaaagctggcaacttaaaac
i macNem1.NW_012012100v1   I 23698 C 0
s cerAty1.NW_012002535v1     835249 45 -    863181 ctatagctgccac-aacaaatgccctcaaagctggcaacttaaaac
i cerAty1.NW_012002535v1   I 23415 T 36975
s chlSab2.chr17            30014035 45 -  71996105 ctgtagctgccac-aacaaatgccctcaaagctggcaacttaaaac
i chlSab2.chr17            I 21417 C 0
s manLeu1.NW_012106264v1      27322 45 +    779361 ctgtagctgccac-aacaaatgccctcaaagctggcaacttaaaac
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     575597 45 -   1829203 atgtagctgccat-aaaaaattccctcaggatcggcaacttaaaac
i colAng1.NW_012115577v1   T 29841 C 0
s calJac3.chr4             30745025 45 + 171630274 ctgtaactgccac-aacaaattcccacaaagttgacagcttgaaac
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1265335 45 -   1771730 ctgtagctgccac-aacaaattccgacaaggttggcaacttaaaac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     366848 45 -    486031 ctgtagctgccac-aacaaattcccacaaggctggcaacttaaaac
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           609316 46 +  18854210 ctgtagctgccataaaaaaattcctacaaacttggtggtttaagac
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T

a score=2383652.000000
s hg38.chr6_GL000254v2_alt  1798835 305 +   4827813 aac-----agaaaattattctttcacagttctggag----gcccaaactgc-aaaatcaatatgc----agggcctcactccctctgaaagctctaagagcaaatccattccttgagtcctccagc-tctggcagctgcagggcattggtcagcgttctttggcttgtagccccattgctctagtctctgcctcattcttcacatcaccttctcctct-tctgactctctcttctgtgtacctgttagaaagacacttgtcattggatctagagcccacctgggtcatctaggaggatctcctcatttcagtatcctccgc-----------------------------------------------------------------------------
s panTro5.chr6             30644995 304 + 175400573 aac-----agaaaattattctttcacagttctggag----gcccaaactgc-aaaatcaatatgc----agggcctcactccctctgaaggctctaagagcaaatccattccttgagtcctccagc-tctggcagctgcagggcattggtcagcgttctttggcttgtggccccattgctccagtctctgcctccttcttcacattgccttctcctct-tctgactctctcttctgtgtacctgttaggaagacacttgtcattggatttaggg-ccacctaggtcatccaggaggatctcctcatttcaatatcctcagc-----------------------------------------------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31068972 305 + 173848474 aac-----agaaaattattctttcacagttctggag----gcccaaactgc-aaaatcaatatgc----agggcctcactccctctgaaggctctaagagcaaatccattccttgagtcctccagc-tctggcagctgcagggcattggtcagcgttctttggcttgtggccccattgctccagtctctgcctccttcttcacattgccttctcctct-tctgactctctcttctgtgtacctgttaggaagacacttgtcattggatttagggcccacctaggtcatccaggaggatctcctcatttcaatatcctcagc-----------------------------------------------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     574313 305 +   2037526 aac-----agaaaattattctttcacagttctggag----gcccaaactgc-aaaatcagtatgc----agggcctcactccctctgaaggctctaagagcaaatccattccttgagtcctccagc-tctggcagctgcagggcattggtcagcgttctttggcttgtagccccattgctccagtctctgcctccttcttcacatcaccttctcctct-tctgactctctcttctgtgtacctgttaggaagacacttgtcattggatctagagcccacctgggtcatctaggaggatctcctcatttcaatatcctcagc-----------------------------------------------------------------------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75245753 305 + 122973662 aac-----agaaaattattctttcacagttctggag----gcccaaactcc-aaaatcaatatgc----agggccacactccctctgaaggctctaagagcaaatccattcctagagtcctcccgc-tctggcagctgcagggcattcgtcagcgttccttggcttgcagccccattgctccagtctctgcctccttcttcacatcaccttctcctct-tctgactctgtcttctgtgtatctgttaggaagacactcgtcattggatctagagcccacctgggtcatccaggaggatctcctcatttcaatatccttagc-----------------------------------------------------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31171534 295 + 172585720 aac-----agaaaattattctttcacagttctggag----gcccaaactcc-aaaatcaatatac----agggccacactccgtctgaaggctctaggagcaaatccattccttgagtcctccagc-tctggcagctgtaggtcattcatcagcattccttggcttgtagccccattgctccaatctttgcctccttcttcacatcaccttctcctct-cctgactctc-cttctgtgtacctgttaggaagacacttgtcattggatttagggcccacct---------aggaggatctcctcatttcaacatccttagc-----------------------------------------------------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30463666 295 - 170955103 aac-----agaaaattattatttcacagttctggag----gcccaaactcc-aaaatcaatatac----agggccacactctctctgaaggctctaggagcaaatccattccttgagtcctccagc-tctggcagctgtaggtcattcatcagcattccttggcttgtagccccattgctccaatctttgcctccttcttcacatcaccttctcctct-cctgactctc-cttctgtgtacctgttaggaagacacttgtcattggatttagggcccacct---------aggaggatctcctcatttcaacatccttagc-----------------------------------------------------------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     720198 296 +   1495729 aac-----agaaaattattctttcacagttctggag----gcccaaactcc-aaaatcaatatac----agggccacactccgtctgaaggctctaggagcaaatccattccttgagtcctccagc-tctggcagctgtaggtcattcatcagcattccttggcttgtagccccattgctccaatctttgcctccttcttcacatcaccttctcctct-cctgactctctcttctgtgtacctgttaggaagacacttgtcattggatttagggcccacct---------aggaggatctcctcatttcaatatccttagc-----------------------------------------------------------------------------
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30014080 305 -  71996105 aac-----agaaaattattctttcacagttctggag----gcccaaagtcc-aaaatcaatatac----agggccacactccctctgaaggctctaggagcaaatccattccttgagtccttcagt-tccggcagctgtaggtcattcatcaccataccttggcttgtagccccattgttccaatctctgcctccttctttacatcgccttctcctct-tctgactctctcttctgtgtacctgtttggaagacacttgtcattggatttagagcccacctgggtcgtccaggaggatctcctcatttcaatatccttagc-----------------------------------------------------------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      27367 305 +    779361 aac-----agaaaattattctttcacagttctggag----gcccaaactcc-aaaatcaatatac----agggccacactccgtctgaaggctctaggagcaaatccattccttgagtcctccagc-tctggcagctgtaggtcattcatcagcattccttggcttgtagccccattgctccaatctttgcctccttcttcacatcaccttctcctct-cctgactctctcttctgtgtacctgttaggaagacacttgtcattggatttagggcccacctaggtcacctaggaggatctcctcatttcaatatccttagc-----------------------------------------------------------------------------
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     575642 305 -   1829203 aac-----agaaaattattctttcacagttctggag----gcccaaactcc-aaaatcaatatgc----agggccacactccctctgaaggatctaggaccaaatccattccttgcatcttctagc-tctggcagctgcagggcattcgtcagcattccttggcttgtagccccattgctccagtctctgcctccttcttcacatcgccttctcctct-tctgactctctcttctaggtacgtattaggaagacacttgtcattggatttagagcccatctgggtcatccaggaggatctcctcatatcaatatccttagc-----------------------------------------------------------------------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30745070 306 + 171630274 aactgtcatgaaaattattctttcatggttctggag----gcgccaactcc-aaaatcaacgtgc----agagccacactccctgtgaaggctctaggagcggatccatcccctgcgtcttccagc-tctggcagttgcagggcattcgtcagcgttccttggattttagccccattgctccaatatctgccttcttctttgcgtcgccttctcctct-tctga----ctcttctgtgcacctgttacaaagacacctgtcattggatttagagcccacctgggtcatccaggaggatctcctcatgttaatatccttagc-----------------------------------------------------------------------------
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1265380 305 -   1771730 aac-----agaaaactattctttcacggttctgaag----gcgccaactcc-aaaatcaacatgc----agagccacatcccctgtgaaggctctaggagcagatccagtccttgtgtcttccagc-tctggtagttgcagggcattcgtcagcgttccttggcttgtagccccattgctccaatctctgcctccttcttcatgtcaccttctcctct-tctgattctctcttctgtgcacctgttaggaagacacttgtcattggatttagagcccacctggttcatccaggaggatctcctcatttcaatatcctcagc-----------------------------------------------------------------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     366893 305 -    486031 aac-----agaaaattattctttcacggttctggag----gcgccaactcc-aaaatcaacatgc----agagccacaccccctgtgaaggctctagaagcgggtccattccctgcatcttccagc-tctggcagttgcagggcgttcgtcagcattccttggcttgtagccccattgctccaatctctgcctccttcttcacgttgccttctcctct-tctgattctctcttctgtgcacctgttaggaagacacttgtcattggatttagagcccacctgggtcatccaggaggatctcttcaggtcaatatccttagt-----------------------------------------------------------------------------
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           609362 390 +  18854210 aac-----agaaaattattctttcactgttccagaggcttgcctgaattccaaaaatcagtatgttgggagggctacactccctttggaggctctaggagagaacccagtcactgtatcttccagcttctggcagtggcacagcattccttgctgttccttggtctatggccccattgctgcaacctctgcctccttcttcacatcaccttctcttctctctggctctttctactgtgtgcaatttatgaaaactcttgtcattggatttagaatctacctggataatccaggatgatc---tcactttaagattcttaatttAggctcagcgcctgtggctcaagaggctaaggcgccagccacatacacctaaggtggcgggttcgaatccccagc
i otoGar3.GL873550         C 0 I 177
e mm10.chr17               58756926 415 -  94987271 T
e cerAty1.NW_012002535v1     835294 36975 -    863181 T

a score=1000853.000000
s hg38.chr6_GL000254v2_alt  1799140 128 +   4827813 ttaattacatctgcaaagaccctttttttccaaacaacttgacattcacagctgctgggcactaagacagaaacatatctttatggggtccaccattcaacccactacatctggctaagctaatattt
s panTro5.chr6             30645299 126 + 175400573 ttaattacatctgcaaagaccc--tttttccaaacaacttgacattcacagcttctggggactaggacagaaacatatctttgtggggaccaccattcaacccactacatctggctaagctaatattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31069277 126 + 173848474 ttaattacatctgcaaagaccc--tttttccaaacaacttgacattcacagcttctggggactaggacagaaacatatctttgtggggaccaccattcaacccactacatctggctaagctaatattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     574618 128 +   2037526 ttaattacatttgcaaagaccctttttttccaaacaacttgacattcacagcttctgggcactaggacagaaacatatctttgtggggaccaccattcaacccactacatctggctaagctaatattt
i gorGor5.CYUI01015528v1   C 0 I 1
s nomLeu3.chr1a            75246058 126 + 122973662 ttaattacatctgcaaagaccc--tttttccaaacaacttgacattcacagcttctggggactaggacagaaacatatctttgtggggaccaccattcaacccactacatctggctaagctaatattt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31171829 126 + 172585720 ttaattacatctgcaaagaccc--tttttccaaacaatttgacattcacagcttctggggactaggacagaaacatatctttgtggggaccaccattcaacccactacaTCTGGCTAAGCTAATATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30463961 126 - 170955103 ttaattacatctgcaaagaccc--tttttccaaacaatttgacattcacagcttctggggactaggacagaaacatatctttgtggggaccaccattcaacccactacaTCTGGCTAAGCTAATATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     720494 126 +   1495729 ttaattacatctgcaaagaccc--tttttccaaacaatttgacattcacagcttctggggactaggacagaaacatatctttgtggggaccaccattcaacccactacaTCTGGCTAAGCTAATATTT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30014385 126 -  71996105 ttaattacatctgcaaagaccc--tttttccaaacaacttgacattcacagcttctggggactaggacagaaacatatctttgtggggaccaccattcaacccactacatctggctaagctaatattt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      27672 126 +    779361 ttaattacatctgcaaagaccc--tttttccaaacaacttgacattcacagcttctggggactaggacagaaacatatctttgtggggaccaccattcaacccactacaTCTGGCTAAGCTAATATTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     575947 124 -   1829203 ttaattatgtctgcaaagaccc--tttttccaaacaacttgacattcacagcttctggggactaggacagaaac--atctttgtggggaccaccattcaacccactacatctggctaagctaatattt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30745376 125 + 171630274 ttatttatatctgcaaaggctc--tttttccaaacaacatggcattgacagcttcagggaactaggacat-aacatatctttgtggggaccaccattcaacccactacaCATGGCTAAACTAATGTGT
i calJac3.chr4             C 0 I 1
s cebCap1.NW_016107755v1    1265685 111 -   1771730 ttcattacatctgcaaagaccc--tttttccaaacaacatgacatc-acagcttcagggcactaggacataaacatatttttgtgcggaccaccattcaacacactac--------------aTCTGT
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018496901v1     367198 126 -    486031 ttaattatatctgcaaagtctg--tttttccaaacaacgtgacattgacagctttgggggactaggacataaacatatctttgtggggaccaccactcaacccactacaCCTGGCTAAACTAATGTGT
i aotNan1.NW_018496901v1   C 0 I 84014
s otoGar3.GL873550           609929 116 +  18854210 ttaaataaatccgcaaagaatg--tttttccaaacaatttaacatacacagcttctgg------agacatggacatatcattgtggagatcaccatttagcccactacaC----CTAAGGCAATGTTT
i otoGar3.GL873550         I 177 I 1
e mm10.chr17               58756926 415 -  94987271 T
e cerAty1.NW_012002535v1     835294 36975 -    863181 T

a score=1167734.000000
s hg38.chr6_GL000254v2_alt  1799268 157 +   4827813 CCAGAATGGCAATCCATCAgtgcaccctaggttacaatcctcattctcattcccaaat-aaactcaacata-tttggacatt--tctaatgtc--------------------------------------atgttttttaggttga-ATAATCTAGTGTCAGAAATGATCCTGAAGAAAGATTATCTTTGGAAGAGACT
s panTro5.chr6             30645425 157 + 175400573 CCAGAATGGCAATCCATCAgtgcaccctaggttacaatcctcattctaattcccaaat-aaactcaacata-tttggacatt--tctaatgtc--------------------------------------atgttttttaggttga-ATAATCTAGTGTCAGAAACGATGCTGAAGAAAGATTATCTTTGGAAGAGACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31069403 157 + 173848474 CCAGAATGGCAATCCATCAgtgcaccctaggttacaatcctcattctcattcccaaat-aaactcaacata-tttggacatt--tctaatgtc--------------------------------------atgttttttaggttga-ATAATCTAGTGTCAGAAACGATGCTGAAGAAAGATTATCTTTGGAAGAGACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     574747 157 +   2037526 ccagAGTGGCAATCCACCAgtgcaccccaggttacaatcctcattctaattcccaaat-aaactcaacata-tttggacatt--tctaatgtc--------------------------------------atgttttttaggttga-ATAATCTAGTGTCAGAAATGATGCTGAAGAAAGTTTATCTTTGGAAGAGACT
i gorGor5.CYUI01015528v1   I 1 C 0
s nomLeu3.chr1a            75246184 158 + 122973662 CCAGAATGGCAATCCACCAGTGCACCCCAGGTTACAATCCTCATTCTCATTCCCAGAT-AAACTCAACATA-TTTGGACATTTCTCTAATGTC--------------------------------------AT-TTTTTTCGGTTGA-ATAATCAGGTGTCAGAAGTGATCCTGAAGAAAGATTACCTTTGGAAGAGACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31171955 162 + 172585720 CCAGAACAGCAATCCACCAgtgcaccccaggttacaatcctcattctcattcccaaat-aaactcaacgta-tttggacatttctctaatgtc-----------------------------------ttttttttttttaggttga-ATAATCTGGTGTCAGAAGTGATCCTGAAGAAGGATTACCTCCGGAAGAGACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30464087 161 - 170955103 CCAGAACAGCAATCCACCAgtgcaccccaggttacaatcctcattctcattcccaaat-aaactcaacgta-tttggacatttctctaatgtc------------------------------------tttttttttttaggttga-ATAATCTGGTGTCAGAAGTGATCCTGAAGAAGGATTACCTCCGGAAGAGACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     720620 161 +   1495729 CCACAACAGCAATCCACCAgtgcaccccaggttacaatcctcattctcattcccaaat-aaactcaacgta-tttggacatttctctaatgtc------------------------------------tttttttttttaggttga-ATAATCTGGTGTCAGAAGTGATCCTGAAGAAGGATTACCTCCGGAAGAGACT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30014511 161 -  71996105 CCAAAATGGCAGTCCACCAgtgcaccccaggttacaatcctcattctcattcccaaat-aaactcaatgta-tttggacatttctctaatgtc------------------------------------tttttttttttaggtaga-ATAATCTGGTGTCAGAAGTGATCCTGAAGAAGGATTACCTCCGGAAGAGACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      27798 162 +    779361 CCAGAACAGCAATCCACCAgtgcaccccaggttacaatcctcattctcattcccaaat-aaactcaacgta-tttggacatttctctaatgtc-----------------------------------ttttttttttttaggttga-ATAATCTGGTGTCAGAAGTGATCCTGAAGAAGGATTACCTCCGGAAGAGACT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     576071 197 -   1829203 CCAGAATGGCAATCCACCAgtgcaccccaggttacaatcctcattctcattcccaaat-aaactcaacgta-tttggacatttctctaatgtctttttttctttttattttattttttaatttaatttttttttttttttAGGTTGA-ATAATCTGGTGTCAGAAGTGCTCCTGAAGAAAGATTACCTTTGGAAGAGACT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30745502 167 + 171630274 CCAGAACGGCAATCTACCAgtgcagcccacgttacaatcctcattcttattcccaaat-aaagtcaacatattttggacatttttctaatgtc-------------------------------ttttttttttttttttaggttga-ATGATCTGGTGCCAGAAGTGCTCCTGGAGAAAGATTTCCTTTGGAAGAGATT
i calJac3.chr4             I 1 C 0
s cebCap1.NW_016107755v1    1265797 161 -   1771730 CCAGAAAGGCAATCCACCAgcgcaccacagattgtaatcctcattctcattcccaaat-aaactcagcatattttggacatttatctaatatc-------------------------------------tttttttttcaggttga-ATAATCTGATATCAGAAGTACTCCTGAAGAAAGATTTTCTTCGGAAGAGACT
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496901v1     451338 163 -    486031 CCAGAATGGCAACCCACCAgtgcaccacagattgtaatcttcattctcattcccaaataaaactcagcatattttggacatttatctaatatc------------------------------------ttttttttttcaggttga-ATAATCTGGTGTCAGAAGTGCTCCTGAAGAAAGATTCTCTTTGGAAGAGACT
i aotNan1.NW_018496901v1   I 84014 C 0
s otoGar3.GL873550           610046 135 +  18854210 CCAGAATGGCAGGCCACCAGTGCAT------------------TTCTCATCCCCAAAT-AAACTCAACATT-TTTGCACATTTCTCTAATGTC---------------------------------------CTTTTTTTAGATGGACATGATCTGGTGTCAGACGCACTCCTAAAGTAAG------TTTTGAAGGGTCT
i otoGar3.GL873550         I 1 I 465
e mm10.chr17               58756926 415 -  94987271 T
e cerAty1.NW_012002535v1     835294 36975 -    863181 T

a score=148366.000000
s hg38.chr6_GL000254v2_alt  1799425 21 +   4827813 TATACTGAGTTTGTTGCTTGA
s panTro5.chr6             30645582 21 + 175400573 TATACTGAGTTTGTTGCTTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31069560 21 + 173848474 TATACTGAGTTTGTTGCTTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     574904 21 +   2037526 TATACTGAGTTTGTTGCTTGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75246342 21 + 122973662 TATACTGAGTTTGTTGCTTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31172117 21 + 172585720 TTTACAGAGTTTGTTGCTTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30464248 21 - 170955103 TTTACAGAGTTTGTTGCTTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     720781 21 +   1495729 TTTACAGAGTTTGTTGCTTGA
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30014672 21 -  71996105 TTTACAGAGTTTGTTGCTTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      27960 21 +    779361 TTTACAGAGTTTGTTGCTTGA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     576268 21 -   1829203 CACACTGTGTTTGTTGCTTGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30745669 21 + 171630274 TATACTGCGTTTGTTGCTTGA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1265958 21 -   1771730 TATACTGTGTTTGTTGCTTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     451501 21 -    486031 TATACTGTGTTTGTTGCTTGA
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           610181 465 +  18854210 I
e cerAty1.NW_012002535v1     835294 36975 -    863181 T

a score=372783.000000
s hg38.chr6_GL000254v2_alt  1799446 48 +   4827813 TTTTT--CCTCTGCTTCTGAATATCTTTTGAGAGCAAAATTTACTTTCTA
s panTro5.chr6             30645603 48 + 175400573 TTTTT--CCTCTGCTTCTGAACATCTTTTGAGAGCAAAATTTACTTTCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31069581 48 + 173848474 TTTTT--CCTCTGCTTCTGAACATCTTTTGAGAGCAAAATTTACTTTCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     574925 48 +   2037526 TTTTT--CCTCTGCTTCTGAACATCTTTTGAGAGCAAAATTTACTTTCTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75246363 48 + 122973662 TTTTT--CCTCTGTTTCTGAACATCTTTTGAGAGCAAAATTTACTTTATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31172138 50 + 172585720 TTTCTTGCCTCTGTTTCTGAACATCTTTTAAGAGCAAACTTCACTTTCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30464269 50 - 170955103 TTTCTTGCCTCTGTTTCTGAACATCTTTTAAGAGCAAACTTCACTTTCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     720802 50 +   1495729 TTTCTTGCCTCTGTTTCTGAACATCTTTTAAGAGCAAACTTCACTTTCTA
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30014693 50 -  71996105 TTTCTTGCCTCTGTTTCTGAACATCTTTTAAGAGTAAACTTCACTTTCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      27981 50 +    779361 TTTCTTGCCTCTGTTTCTGAACATCTTTTAAGAGCAAACTTCACTTTCTA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     576289 48 -   1829203 TTTTT--CCTCTGTTTCTGAACATCTTCTGAGAGCAAAATTTACTTTCTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30745690 50 + 171630274 TTTTTTCCCTCTGTTTCTGAACATCTTTCGGGAGCAAAATTTACTTTCTA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1265979 50 -   1771730 TTTTTTTCCTCTCTTGCTGAGCATCTTTTGAGAGCAAAATTTACTTTCTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     451522 50 -    486031 TTTTTTCCCTCTATTTCTGAGCATCTTTTGAGAGCAAAATTTAGTTTCTA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           610646 48 +  18854210 TTCTT--CCTCTGTTTCTGAACACCTTCGGGGGGCAAATTTTACTTTGTA
i otoGar3.GL873550         I 465 I 745
e mm10.chr17               58756926 415 -  94987271 T
e cerAty1.NW_012002535v1     835294 36975 -    863181 T

a score=147900.000000
s hg38.chr6_GL000254v2_alt  1799494 26 +   4827813 AAATGGTAAGGATGAGTCAACTCCTT
s panTro5.chr6             30645651 26 + 175400573 AAATGGTGAGGATGAGTCAACTCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31069629 26 + 173848474 AAATGGTGAGGATGAGTCAACTCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     574973 26 +   2037526 AAATGGTGAGGATGAGTCAACTCCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75246411 26 + 122973662 AAATGGTGTGGATGAGTCGACTCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31172188 26 + 172585720 AAAAGGTGGGTATATGTCAACCCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30464319 26 - 170955103 AAAAGGTGGGTATATGTCAACCCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     720852 26 +   1495729 AAAAGGTGGGTATATGTCAACCCTTT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30014743 26 -  71996105 AAAAGGTGGGTATATGTCAACCCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      28031 26 +    779361 AAAAGGTGGGTATATGTCAACCCTTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     576337 26 -   1829203 AAATGGTGGGGATGAGCCGACCCTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30745740 26 + 171630274 AAAAGGTGGCAATGAATCGACCCTTT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1266029 26 -   1771730 AAAAGGTAGGAATGAGTCGATCCCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     451572 26 -    486031 AAAAGGTGGGGACGAGTCGACCCTTG
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           610694 745 +  18854210 I
e cerAty1.NW_012002535v1     835294 36975 -    863181 T

a score=2485839.000000
s hg38.chr6_GL000254v2_alt  1799520 348 +   4827813 A-AAAGCTGTTTGGGCTGTTGTCACCATTCTATGTGAGCCTTCAGTCTCCCCAAAGAG-AAATTTTTTGTTGTCAGGATAAAGTGGTACATGAATAAACAAGATTTCCATTAGGCAGCGTGCCAGTCTCAAGAAAATTCTGGAGAA-------------------AATGGTGACAGGATAGACAATTAGATCACAGGCTGCCTGCACATCAAGTAAAAAC--AAAAATCCTATGCTAGGCACacactatt-aaaaaacaaatcgctccaacccctaccatttcctcacagagattatagaatttttcttt-------------------tgctgttgagaaattaataagaggcagaacagg-atgccaaaact-ccaaagcatccaatatag-
s panTro5.chr6             30645677 346 + 175400573 A-AAAGCTGTTTGGGCTGTTGTCACCATTCTATGTGAGACTTCAGTCTCCCCAAAGAG-AAATTTTTTGTTGTCAGGATAAAGTGGTACATGAATAAACAAGATTGCCATTAGGCAGCGTGCCAGTCTCAGGAAAATTCTGGAGAA-------------------AATGGTGACAGGATAGACAATTAGATCACAGGCTGCCTGCACATCAAGTAAAAAC--AAAAATCCTATGCTAGG--Cacactatt-aaaaaacaaatcgctccaacccctaccatttcctcccagggattatagaatttttcttt-------------------tgctgctgagaaattaataagaggcagaacagg-atgccaaaact-ccaaagcatccaatatag-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31069655 346 + 173848474 A-AAAGCTGTTTGGGCTGTTGTCACCATTCTATGTGAGACTTCAGTCTCCCCAAAGAG-AAATTTTTTGTTGTCAGGATAAAGTGGTACATGAATAAACAAGATTGCCATTAGGCAGCGTGCCAGTCTCAGGAAAATTCTGGAGAA-------------------AATGGTGACAGGATAGACAATTAGATCACAGGCTGCCTGCACATCAAGTAAAAAC--AAAAATCCTATGCTAGG--Cacactatt-aaaaaacaaatcgctccaacccctaccatttcctcccagggattatagaatttttcttt-------------------tgctgttgagaaattaataagaggcagaacagg-atgccaaaact-ccaaagcatccaatatag-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     574999 345 +   2037526 A-AAAGCTGTTTGGGCTGTTGTCACCATTCTATGTGAGACTTCAGTCTCCCCAGAGAG-AAATTTTTTGTTGTCAGGATAAAGTGGTACATGAATAAACAAGATTGCCATTAGGCAGCGTGCCAGTCTCAGGAAAATTCCGGAGAA-------------------AATGGTGACAGGATAGACAGTTAGATCACAGGCTGCCTGCACATCAAGTAAAAAC--AAAAATCCTATGCTAGG--Cacactatt-aaaaaacaaatcgctccaacccctaccatttcctcacagggattatagaatttttc-tt-------------------tgctgttgagaaattaataagaggcagaacagg-atgccaaaact-ccaaagcatccaatatgg-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75246437 346 + 122973662 A-AAAGCTGTTTGGGCTGTTGTCACCATTCTATGTGAGACTTCAGTCTCCCCAAAGAG-AAATTTTTTGTCATCAAGataaactggtacatgaataaacaagattgccattaggctgcgtgccagtctcaagaaaattctggagaa-------------------aatggtgacaagatagacaattagatcacaggctgcctgcccaccaagtaaaaac--aaatatcctatgctagg--cacactatt-aaaaaacaaatcgctgcaacccctaccatttccTCACAGGGATTataggatttttcttt-------------------tgctgtcgagaaatttaaaagaggcagaacagg-atgccaaaatt-ccaaagcatcctatatag-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31172214 332 + 172585720 A-GAAGCTGTTTGGGCTGTTGTCACCATTCAATGACAGACTTCAGTCTCCCCAAAGAG-AAATTATCTGTTGTCAGGATAAACTGGTACATGAATAAACAAAATTGCCATTAGGTGGCGCACCACTCTCAAGAAAAA---------------------------------TGACAGGACGGACAATTAGATCACAGGCTGCCTGTCCACCAAGTAAAAAC--AAAAATCCTATGCTAGG--Cacactgtt-aaaaaacaaatcgctccaacccctaccatttcctcacagggattatagaatttttcttt-------------------tgctgttgagaaattaataagaggcagaacagg-atgccaaaatt-ccaaagcatccaatatag-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30464345 332 - 170955103 A-GAAGCTGTTTGGGCTGTTGTCACCATTCAATGACAGACTTCAGTCTCCCCAAAGAG-AAATTATCTGTTGTCAGGATAAACTGGTACATGAATAAACAAAATTGCCATTAGGTGGCGCACCACTCTCAAGAAAAA---------------------------------TGACAGGACGGACAATTAGATCACAGGCTGCCTGTCCACCAAGTAAAAAC--AAAAATCCTATGCTAGG--CACACTGTT-AAAAAACAAATCGCTCCAACCCCTACCATTTCCTCACAGGGATTATAGAATTTTTCTTT-------------------TGCTGTTGAGAAATTAATAAGAGGCAGAACAGG-ATGCCAAAATT-CCAAAGCATCCAATATAG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     720878 332 +   1495729 A-GAAGCTGTTTGGGCTGTTGTCACCATTCAATGACAGACTTCAGTCTCCCCAAAGAG-AAATTATCTGTTGTCAGGATAAACTGGTACATGAATAAACAAAATTGCCATTAGGTGGCGCACCACTCTCAAGAAAAA---------------------------------TGACAGGACGGACAATTAGATCACAGGCTGCCTGTCCACCAAGTAAAAAC--AAAAATCCTATGCTAGG--Cacactgtt-aaaaaacaaatcgctccaacccctaccatttcctcacagggattatagaatttttcttt-------------------tgctgttgagaaattaataagaggcagaacagg-atgccaaaatt-ccaaagcatccaatatag-
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30014769 328 -  71996105 A-GAAGCTGTTTGGGCTGTTGTCACCATTCAATGACAGACTTCAGTCTCCCCAAAGAG-AAATTATCTGTTGTCAGGATAAACTGGTACATGAATAAACAAAATTGCCATTAGGTGGCGCACCAGTCTCAAGAAAAA---------------------------------TGacaggatggacaattagatcacaggctgc----ccaccaagtaaaaac--aaaaatcctatgctagg--cacactgtt-aaaaaacaaatcgctccaacccctaccatttccTCACAAGGATTATAGAATTTTTCTTT-------------------TGCTGTTGAGAAATTAATAAGAGGCAGAACAGG-ATGCCAAAATT-CCAAAGCATCCAATATAG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      28057 332 +    779361 A-GAAGCTGTTTGGGCTGTTGTCACCATTCAATGACAGACTTCAGTCTCCCCAAAGAG-AAATTATCTGTTGTCAGGATAAACTGGTACATGAATAAACAAAATTGCCATTAGGTGGCGCACCACTCTCAAGAAAAA---------------------------------TGACAGGACGGACAATTAGATCACAGGCTGCCTGTCCACCAAGTAAAAAC--AAAAATCCTATGCTAGG--CACACTGTT-AAAAAACAAATCGCTCCAACCCCTACCATTTCCTCACAGGGATTATAGAATTTTTCTTT-------------------TGCTGTTGAGAAATTAATAAGAGGCACAACAGG-ATGCCAAAATT-CCAAAGCATCCAATATAG-
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     576363 346 -   1829203 A-AAAGCTGTTCGGGCTGTTGTCGCCCTTCTGTGAGAGACTTCAGTCTCCCCAAAGAG-AAATGTTCTGTCATCAGGATAAACTGGTACATGAGTAAACAGGATTGCCATCAGGTGGCGCGCCAGTCTCAAGAAAGATCTGGAGAA-------------------GATGGTGACAGGATAGACAATTAGATCACATGCTGCCTGCCCACCAAGTAAAAAC--AAAAATCCTATGCTAGG--CACACTGTT-AAAAAACAAATCGCTCCAACTGCTACCATTTCCTCACAGAGATTATAGAATTTTTCTTT-------------------TGCTGTTGAGAAATTAATGAGAGGCACAACAGG-ATGCCAAAATT-CCAAAGCATCCAATATAG-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30745766 344 + 171630274 A-AAAGCTGTTCAGGCTGTTGTCAGCATTCTATGAGAGACTTTGGTCTCCCCAAATAG-AAATTTTCTGTCATCAAGATAAACTGGTACATGAATAAACAAGATTACCATTAGGTGGCGGGCCAGTCTCAAGAAAAATCTGGAGAA-------------------AATGATGACAGGATAGACAATTAGAGCACAAGCTGC----CCATCAAGTAAAAACAAAAAAATCCTATGCTAGG--GACACTGTTAAAAAAACAACTCACTCCAATCCTTCCCATTTCC-CATGGGGATTATAGAATTTTTCTTT-------------------TGCTGTTGAGAAATTAATAGCAGGCAGAACAGA-ATGCCAAAATT-CCAAAGAATGCAATATAG-
i calJac3.chr4             C 0 N 0
s cebCap1.NW_016107755v1    1266055 341 -   1771730 GTAAAGCTGTTCGGGCTGTTGTCACCATTCTAT--AAGACTTCAGTCTCCCAAAAGAGAAAATTTTCTGTCGTCAGAAAAAACTGGTACATGAATAAATAAGAATATCATTAGGCGGTGTGCCAGTCTCAAGAAAAATCTGGAGAA-------------------AATGGTAACAGGATGGACAATTAGAGCACAGGCTGC----CCACCAAGCAAAAAC--AAAAATCCTATGCTAGG--GACACTGTT-AAAAAACAACTCCCTCCAACCACTACAATTTCCTCATGGGGATTATAGAATTTTTTTTT---------------------CCTTTGAGAAATTAATAAGAGGCAGAACAGG-ATGCCAAAATTCCCAAAACATGCAACCTAG-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     451598 362 -    486031 A-AAAACTGTTCGGGCTGTTGTCACCATTCTATGAGAGACTTCAGTCTCCCAAAAGAG-AAATTTTCTGTTGTCAGGAAAAACTGGTACATGAACGAATAAGAATATCATTAGGCGGTGGGCCAGTCTCAAGAAAAATCTGGAGAA-------------------AAtggtaacaggatggacaattagagcacaggctgc----ccaccaagcaaaaac--aaaaatcctatgctagg--gacactgtt-aaaaaacaactccctccaacCACTACAACCTCCTCACGGGGATTATAGAAtttttttttttttttttttttttttttttgcttttGAGAAATCAATAAAAGACAGAACAGG-ATGCCAAAAATTCCCAAGCATGCAATATAG-
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           611439 358 +  18854210 a-aaaGTCAGTGAAGCTGATGTTACCATCC-ATGAGGGAGGTCAGTCTCT--GAAGCA-AAATTTTCTCCAGTCA-GACAAACTCGTACAAAGACAGGCAAGATTACCACTAGGGGGCCTGCCAGTCTCAAGAAAAATCCGTAGGATTTTTCTAGGGAAAACTTGAAGGGTCACGGGACCAGCAATTACAGCACAGGCTGC----CCACCAAGTACAAAC---AAACTACTGTGCCAGG--CACACTGTA-AAACaaataccaaatcaaaccattcccagtccctgacagggcttacagaggttttcttt-------------------tgcactttagagaataataagagacagaatgggaatcccaacatt-ccaaagcacgcAGGAATGG
i otoGar3.GL873550         I 745 C 0
e mm10.chr17               58756926 415 -  94987271 T
e cerAty1.NW_012002535v1     835294 36975 -    863181 T

a score=220078.000000
s hg38.chr6_GL000254v2_alt  1799868 28 +   4827813 gccctcttctgggactcctgtcagctat
s panTro5.chr6             30646023 28 + 175400573 gccctcttctgggactcctgtcagctat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070001 28 + 173848474 gccctcttctgggactcctgtcagctat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575344 28 +   2037526 gccctcttctgggactcctgtcagctat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75246783 28 + 122973662 gccctcttctggaactcctgtcagctat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31172546 28 + 172585720 gccctcttctgggactcctgtcagctat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30464677 28 - 170955103 GCCCTCTTCTGGGACTCCTGTCAGCTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     721210 28 +   1495729 gccctcttctgggactcctgtcagctat
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30015097 28 -  71996105 GCCCTCTTCTGGGACTCCTGTCAGCTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      28389 28 +    779361 GCCCTCTTCTGGGACTCCTGTCAGCTAT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     576709 28 -   1829203 GCCCTCTTCTGGGACTCCTGTCAGCTAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30852640 28 + 171630274 ACCATCCTCTAGGACTCCTGTCACGTAT
i calJac3.chr4             N 0 C 0
s cebCap1.NW_016107755v1    1266396 28 -   1771730 ACCATCTTCTAGGACTCCTGTCAGGTAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     451960 27 -    486031 ACCAT-TTCTAGGACTCCTGTCAGGTGT
i aotNan1.NW_018496901v1   C 0 I 13
s otoGar3.GL873550           611797 26 +  18854210 TCCCCTTTCTGGGACTTCAGCCAGCT--
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e cerAty1.NW_012002535v1     835294 36975 -    863181 T

a score=106183.000000
s hg38.chr6_GL000254v2_alt  1799896 15 +   4827813 atgttcaaaaattat
s panTro5.chr6             30646051 15 + 175400573 atgttcaaaaattat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070029 15 + 173848474 atgttcaaaaattat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575372 15 +   2037526 atgttcaaaaattat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75246811 15 + 122973662 atgttcaaaaattat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31172574 15 + 172585720 atgttCAAAATTTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30464705 15 - 170955103 ATGTTCAAAATTTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     721238 15 +   1495729 atgttCAAAATTTAT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30015125 15 -  71996105 ATGTTCAAAATTTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      28417 15 +    779361 ATGTTCAAAATTTAT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     576737 15 -   1829203 ATGTTCAAAACTTAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30852668 15 + 171630274 ATGTTCAAAAATTGT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1266424 15 -   1771730 ATGTTcaaaaattgt
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           611823 14 +  18854210 -TTTTCAAAAACTAT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     451987 13 -    486031 I
e cerAty1.NW_012002535v1     835294 36975 -    863181 T

a score=23516.000000
s hg38.chr6_GL000254v2_alt  1799911 6 +   4827813 tgtcag
s panTro5.chr6             30646066 6 + 175400573 ggtcag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070044 6 + 173848474 ggtcag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575387 6 +   2037526 ggtcag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75246826 6 + 122973662 ggtcCg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31172589 6 + 172585720 GGTTgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30464720 6 - 170955103 GGTTgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     721253 6 +   1495729 GGTTgg
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30015140 6 -  71996105 GGTTgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      28432 6 +    779361 GGTTgg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     576752 6 -   1829203 GGTcag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30852683 6 + 171630274 AGTcgt
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1266439 6 -   1771730 agtcgt
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611837 0 +  18854210 C
e aotNan1.NW_018496901v1     451987 13 -    486031 I
e cerAty1.NW_012002535v1     835294 36975 -    863181 T

a score=177702.000000
s hg38.chr6_GL000254v2_alt  1799917 25 +   4827813 tggctcatgcctgtaatcccagcac
s panTro5.chr6             30646072 25 + 175400573 tggctcatgcctgtaatcccagcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070050 25 + 173848474 tggctcatgcctgtaatcccagcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575393 25 +   2037526 tggctcatgcctgtaatcccagcac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75246832 25 + 122973662 tggctcttgcctgtaatcccagaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31172595 25 + 172585720 tggctcatgcctgtaatttcagcac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30464726 25 - 170955103 tggctcatgccggtaatttcagcac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     721259 25 +   1495729 tggctcatgcctgtaatttcagcac
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30015146 25 -  71996105 tggctcatgcctgtaattccagcac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      28438 25 +    779361 tggctcatgcctgtaatttcagcac
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     576758 25 -   1829203 tggctcatgactgtaaccccagcac
i colAng1.NW_012115577v1   C 0 N 0
s calJac3.chr4             30852689 25 + 171630274 tgtctcatgcctgtaatcccagcac
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1266445 25 -   1771730 tgcctcatgcctgtaatcccagcac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     452000 25 -    486031 TCATGcatgcctgtaatcccagcac
i aotNan1.NW_018496901v1   I 13 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611837  0 +  18854210 C
e cerAty1.NW_012002535v1     835294 36975 -    863181 T

a score=656085.000000
s hg38.chr6_GL000254v2_alt  1799942 85 +   4827813 cttgggaggccgaggtggaaagattgcttaagctcatgagtttgaaaccatcct-gggcaacatagcaagagttcatctctatttt
s panTro5.chr6             30646097 85 + 175400573 cttgggaggccgaggtggaaagatcgcttaagctcatgagtttgaaaccatcct-gggcaacatagcaagagttcatctatatttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070075 85 + 173848474 cttgggaggccgaggtggaaagatcgcttaagctcatgagtttgaaaccatcct-gggcaacatagcaagagttcatctatatttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575418 85 +   2037526 cttgggaggccgaggtggaaagatcgcttaagctcatgagtttgaaaccatcct-gggcaacatagcaagagttcatctatatttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75246857 85 + 122973662 cttgggaggccgaggtggaaagattgcttaagctcatgagtttgaaaccatcct-gggcaacacagcaagaattcatctctatttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31172620 85 + 172585720 cttgggaggccgaggtggaaggattgcttgagctcatgagattgaaaccatcct-gggcaacatagcaagagctcatctctgtttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30464751 85 - 170955103 cttgggaggccgaggtggaaggatcgcttgagctcatgagattgaaaccatcct-gggcaacatagcaagagctcatctctatttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     721284 85 +   1495729 cttgggaggccgaggtggaaggatcacttgagctcatgagattgaaaccatcct-gggcaacatagcaagagctcatctctatttt
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30015171 85 -  71996105 cttgggaggccgaggtggaaggatcgcttgagctcatgagattgaaaccatcct-gggcaacatagcaagagctcatctctatttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      28463 85 +    779361 cttgggaggccgaggtggaaggatcgcttgagctcatgagattgaaaccatcct-gggcaacatagcaagagctcatctctatttt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     681957 85 -   1829203 cttgggaagccgaggtggaaggattgcttgagctcatgagattgaaaccatcct-gggcaacatagcaagagctcatctctatttt
i colAng1.NW_012115577v1   N 0 C 0
s calJac3.chr4             30852714 85 + 171630274 cttgggaagccgaggtggaaggattgcttgagctcatgagtttcaaaccatcct-cgacaccatagcaggagctgatctctatttt
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1266470 85 -   1771730 cttgggaggccgaggtggaaggattgcttgagctcatgagtttgaaacaatcct-cggcaacatagcaggagctcatctctatttt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     452025 86 -    486031 cttgggaggccgaggtggaaggattgcttgagctcatgagtttgaaaccatcctggggcaacagagcaggagctcatctctatttt
i aotNan1.NW_018496901v1   C 0 T 84021
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611837  0 +  18854210 C
e cerAty1.NW_012002535v1     835294 36975 -    863181 T

a score=24813.000000
s hg38.chr6_GL000254v2_alt  1800027 7 +   4827813 aaaaaaT
s panTro5.chr6             30646182 7 + 175400573 aaaaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070160 7 + 173848474 aaaaaaT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575503 7 +   2037526 aaaaaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75246942 7 + 122973662 aaaaaat
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30464836 7 - 170955103 aaaaaat
i macFas5.chr4             C 0 C 0
s colAng1.NW_012115577v1     682042 7 -   1829203 taaaaat
i colAng1.NW_012115577v1   C 0 N 0
s calJac3.chr4             30852799 7 + 171630274 aaaaaat
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1266555 7 -   1771730 aaaaaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     368090 7 -    486031 aaaaaat
i aotNan1.NW_018496901v1   T 84021 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611837 0 +  18854210 C
e manLeu1.NW_012106264v1      28548 0 +    779361 C
e chlSab2.chr17            30015256 0 -  71996105 C
e cerAty1.NW_012002535v1     835294 36975 -    863181 T
e macNem1.NW_012012100v1     721369 0 +   1495729 C
e rheMac8.chr4             31172705 0 + 172585720 C

a score=2300.000000
s hg38.chr6_GL000254v2_alt  1800034 1 +   4827813 T
s panTro5.chr6             30646189 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070167 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575510 1 +   2037526 t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75246949 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30464843 1 - 170955103 c
i macFas5.chr4             C 0 T 22450
s calJac3.chr4             30852806 1 + 171630274 t
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1266562 1 -   1771730 t
i cebCap1.NW_016107755v1   C 0 I 7
s aotNan1.NW_018496901v1     368097 1 -    486031 t
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611837 0 +  18854210 C
e manLeu1.NW_012106264v1      28548 0 +    779361 C
e chlSab2.chr17            30015256 0 -  71996105 C
e cerAty1.NW_012002535v1     835294 36975 -    863181 T
e macNem1.NW_012012100v1     721369 0 +   1495729 C
e rheMac8.chr4             31172705 0 + 172585720 C

a score=110701.000000
s hg38.chr6_GL000254v2_alt  1800035 75 +   4827813 AAggccggtcgtggtgcctcacgcctgtaatcccagcattttgggaggcccaggcaagcggatcgcctgaatttg
s panTro5.chr6             30646190 75 + 175400573 aaggccggtcgtggtgactcacgcctgtaatcccagcattttgggaggcccaggcaagcggatcgcctgaatttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070168 75 + 173848474 AAggccggtcgtggtgactcacgcctgtaatcccagcattttgggaggcccaggcaagcggatcgcctgaatttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575511 75 +   2037526 aaggccggtcgtggtgactcacgcctgtaatcccagcattttgggaggcccaggcaagcggatcgcctgaatttg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75246950 75 + 122973662 aaggcccgtcgtggtgcctcatgcctgtaatcccagcactttgggaggcctaggcaggcggatcgcctgagtttg
i nomLeu3.chr1a            C 0 C 0
s cebCap1.NW_016107755v1    1266570 73 -   1771730 aaTgccgggcgcagtggctcaagcctgtaatctcagcactttgggaggctgaggcgggtggatcac--aaggtca
i cebCap1.NW_016107755v1   I 7 C 0
s aotNan1.NW_018496901v1     368098 75 -    486031 aaggccaggggctgtggctcacttctctgatcccagcactttgggaggcagagacaggtggatcacctgaggttg
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611837  0 +  18854210 C
e calJac3.chr4             30852807  0 + 171630274 C
e manLeu1.NW_012106264v1      28548  0 +    779361 C
e chlSab2.chr17            30015256  0 -  71996105 C
e cerAty1.NW_012002535v1     835294 36975 -    863181 T
e macNem1.NW_012012100v1     721369  0 +   1495729 C
e macFas5.chr4             30464844 22450 - 170955103 T
e rheMac8.chr4             31172705  0 + 172585720 C

a score=252299.000000
s hg38.chr6_GL000254v2_alt  1800110 125 +   4827813 ggagttggaggccaacctgaccaacatggagaaaccccgtgtctaataaaaatac--aaattcagccagatgtggttgcgcatacctgtaatcccagctactcgggaggct--gcggcaggagtacagc
s panTro5.chr6             30646265 125 + 175400573 ggagttggaagccaacctgaccaacatggagaaaccccgtgtctaataaaaatac--aaattcagccagatgtggttgcgcatacctgtaatcccagctactcgggaggct--gcggcaggagtacagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070243 125 + 173848474 ggagttggaagccaacctgaccaacatggagaaaccccgtgtctaataaaaatac--aaattcagccagatgtggttgcgcatacctgtaatcccagctactcgggaggct--gcggcaggagtacagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575586 125 +   2037526 ggagttggaagccaacctgaccaacatggagaaaccccgtgtctaataaaaatac--aaattcagccagatgtggttgcgcatacctgtaatcccagctactcgggaggct--gcggcaggagtacagc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75247025 125 + 122973662 ggagttggaggccagcctgaccaagatggagaaaccccatctctaataaatatac--aaattcagccaggtgtggttgcgcacacctgtaatcccagctactcgtgaggct--gaggcaggagaacagc
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115577v1     576812 125 -   1829203 ggagttcgaggccagcctgaccaacacagagaaaccccatgtctactaaaaatac--aaaattagctaggtgtggtggcgcatacctgtaatcccagctactcgagggact--gagacaggagaattgc
i colAng1.NW_012115577v1   N 0 I 28520
s cebCap1.NW_016107755v1    1266643 127 -   1771730 agagatcgagaccatcctgttcaacatggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcatggtggcacgtgcctgtaatcccagctactcaggaggct--gaggcaggagaattgc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     368173 127 -    486031 ggagttcaagaccagcctgaccatcatggagaaaccctgtctctaataaaaatac--aaaattagcagggcgtggtggcgcatgcctgtaatcccacctacttgtaaagctgagaggcaggagaatcgc
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611837   0 +  18854210 C
e calJac3.chr4             30852807   0 + 171630274 C
e manLeu1.NW_012106264v1      28548   0 +    779361 C
e chlSab2.chr17            30015256   0 -  71996105 C
e cerAty1.NW_012002535v1     835294 36975 -    863181 T
e macNem1.NW_012012100v1     721369   0 +   1495729 C
e macFas5.chr4             30464844 22450 - 170955103 T
e rheMac8.chr4             31172705   0 + 172585720 C

a score=234134.000000
s hg38.chr6_GL000254v2_alt  1800235 84 +   4827813 ttgaactcgggaggcagaggttgcagtgagccgagatcatgccattgcactccagcgtgggagaaaagagggaaacttcatgtc
s panTro5.chr6             30646390 84 + 175400573 ttgaactcgggaggcagaggttgcagtgagccgagatcatgccattgcactccagcatgggagaaaagagggaaacttcatgtc
i panTro5.chr6             C 0 I 1
s panPan2.chr6             31070368 84 + 173848474 ttgaactcgggaggcagaggttgcagtgagccgagatcatgccattgcactccagcatgggagaaaagagggaaacttcatgtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575711 83 +   2037526 ttgaactcgggaggcagaggttgcagtgagccgagatcatgccattgcactccagcatgggagaaaagaggg-aacttcatgtc
i gorGor5.CYUI01015528v1   C 0 I 2
s nomLeu3.chr1a            75247150 83 + 122973662 ttgaact-gggaggcagaggttgcagcgagccaagatcatgccattgcactgcagcctgggagaaaagagggaaacttcatgtc
i nomLeu3.chr1a            C 0 I 7
s macFas5.chr4             30442394 84 - 170955103 Ttgaacccaggaggcagaggttgcagtgagccaagatcatgccattgcactccagcctgggagaaaagagggaaacttcatgtc
i macFas5.chr4             T 22450 C 0
s colAng1.NW_012115577v1     605457 84 -   1829203 ttgaacccgggaggcagaggttgcagtgagccgagatcatgccattgcactccagcctgggagaaaagagggaaacttaacgtc
i colAng1.NW_012115577v1   I 28520 C 0
s cebCap1.NW_016107755v1    1266770 84 -   1771730 ctgaacccaggaggcggaggttgcggtgagccgagatcgcgccattgcactccagcctgggtaacaagagcgaaactccgtctc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     368300 84 -    486031 ttgaacctgggaggcagaggtcacagtgagctgagatcctgccattacactccagtctgggcaacaagagtgaaactctgtctc
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611837  0 +  18854210 C
e calJac3.chr4             30852807  0 + 171630274 C
e manLeu1.NW_012106264v1      28548  0 +    779361 C
e chlSab2.chr17            30015256  0 -  71996105 C
e cerAty1.NW_012002535v1     835294 36975 -    863181 T
e macNem1.NW_012012100v1     721369  0 +   1495729 C
e rheMac8.chr4             31172705  0 + 172585720 C

a score=12285.000000
s hg38.chr6_GL000254v2_alt  1800319 3 +   4827813 aaa
s panTro5.chr6             30646475 3 + 175400573 aaa
i panTro5.chr6             I 1 C 0
s panPan2.chr6             31070452 3 + 173848474 aaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575796 3 +   2037526 aaa
i gorGor5.CYUI01015528v1   I 2 C 0
s nomLeu3.chr1a            75247240 3 + 122973662 aaa
i nomLeu3.chr1a            I 7 C 0
s macFas5.chr4             30442478 3 - 170955103 aaa
i macFas5.chr4             C 0 I 10
s cerAty1.NW_012002535v1     798319 3 -    863181 aaa
i cerAty1.NW_012002535v1   T 36975 C 0
s colAng1.NW_012115577v1     605541 3 -   1829203 aaa
i colAng1.NW_012115577v1   C 0 I 5
s cebCap1.NW_016107755v1    1266854 3 -   1771730 aaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     368384 3 -    486031 aaa
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611837 0 +  18854210 C
e calJac3.chr4             30852807 0 + 171630274 C
e manLeu1.NW_012106264v1      28548 0 +    779361 C
e chlSab2.chr17            30015256 0 -  71996105 C
e macNem1.NW_012012100v1     721369 0 +   1495729 C
e rheMac8.chr4             31172705 0 + 172585720 C

a score=8281.000000
s hg38.chr6_GL000254v2_alt  1800322 1 +   4827813 a
s panTro5.chr6             30646478 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070455 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575799 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75247243 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31172705 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30442491 1 - 170955103 a
i macFas5.chr4             I 10 C 0
s macNem1.NW_012012100v1     721369 1 +   1495729 a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     798322 1 -    863181 a
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            30015256 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      28548 1 +    779361 a
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     605549 1 -   1829203 a
i colAng1.NW_012115577v1   I 5 C 0
s cebCap1.NW_016107755v1    1266857 1 -   1771730 a
i cebCap1.NW_016107755v1   C 0 I 2
s aotNan1.NW_018496901v1     368387 1 -    486031 a
i aotNan1.NW_018496901v1   C 0 I 83723
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611837 0 +  18854210 C
e calJac3.chr4             30852807 0 + 171630274 C

a score=28996.000000
s hg38.chr6_GL000254v2_alt  1800323 7 +   4827813 --aaaaata
s panTro5.chr6             30646479 7 + 175400573 --aaaaata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070456 7 + 173848474 --aaaaata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575800 7 +   2037526 --aaaaata
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75247244 7 + 122973662 --aaaaatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31172706 7 + 172585720 --aaaaatc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30442492 7 - 170955103 --aaaagtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     721370 7 +   1495729 --aaaaatc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     798323 7 -    863181 --aaaagtt
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            30015257 7 -  71996105 --aaaaatc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      28549 7 +    779361 --aaaaatc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     605550 7 -   1829203 --aaaagtt
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1    1266860 7 -   1771730 aaaaaaa--
i cebCap1.NW_016107755v1   I 2 C 0
s aotNan1.NW_018496901v1     452111 5 -    486031 --aaaaa--
i aotNan1.NW_018496901v1   I 83723 I 2
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611837 0 +  18854210 C
e calJac3.chr4             30852807 0 + 171630274 C

a score=203963.000000
s hg38.chr6_GL000254v2_alt  1800330 28 +   4827813 aaaataaataagaaaag-aaAAAAATTAA
s panTro5.chr6             30646486 28 + 175400573 aaaataaataagaaaaG-AAAAAAATTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070463 28 + 173848474 aaaataaataagaaaag-aaAAAAATTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575807 28 +   2037526 aaaataaataagaaaaG-AAAAAAATTAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75247251 28 + 122973662 aaaataaataagaaaag-aaaaaaataaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31172713 24 + 172585720 aaaaTAAATAAGA-----AAAAAAATTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30442499 28 - 170955103 aaaataaaTAAGAAAAG-AAAAAAATTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     721377 24 +   1495729 aaaaTAAATAAGA-----AAAAAAATTAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     798330 28 -    863181 aaaataaataagaaaag-aaaaaaGTTAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            30015264 24 -  71996105 aaaaTAAATAAGA-----AAAAAAATTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      28556 24 +    779361 aaaaTAAATAAGA-----AAAAAAATTAA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     605557 28 -   1829203 aaaataaataagaaaaG-AAAAAAATTAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30852807 29 + 171630274 aaaatcaataagaaaagcaaaaaaATTAA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1266867 29 -   1771730 aaaattaataggaaaagagaaaaaaTTAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     452118 28 -    486031 aaaaTCAATAAGAAAAG-AAAAAAATTAA
i aotNan1.NW_018496901v1   I 2 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611837  0 +  18854210 C

a score=345973.000000
s hg38.chr6_GL000254v2_alt  1800358 45 +   4827813 GGTCGTCTCTTGTGTACTTTTTAAAATCAATGGATAGAGTATAGC
s panTro5.chr6             30646514 45 + 175400573 GGTCGTCTCTTGTGTACTTTTTAAAATCAATGGATAGAGTATAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070491 45 + 173848474 GGTCGTCTCTTGTGTACTTTTTAAAATCAATGGATAGAGTATAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575835 45 +   2037526 GGTCGCCTCTTGTGTACTTTTTAAAATCAATGGATAGAGTATAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75247279 45 + 122973662 GGTCATCTCTTGTGTACTTTTTAAAATCAATGGATAAAGTATAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31172737 45 + 172585720 GGTCCTCTATTGTGTACGTTTTGAAATCAACAGGTAGACTACACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30442527 45 - 170955103 GGTCATCTCTTGTGTACTTTTTAAAATCAATGGATAGAGTATAGC
i macFas5.chr4             C 0 I 22341
s macNem1.NW_012012100v1     721401 45 +   1495729 GGTCCTCTCTTGTGTACGTTTTGAAATCAACAGGTAGACTACACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     798358 45 -    863181 GGTCATCTCTTGTGTACTTTTTAAAATCAATGGATAGAGTATAGC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            30015288 45 -  71996105 GGTCCTCTCTTGTGTACGTTTTGAAATCAACAAGTAGAGTACACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      28580 45 +    779361 GGTCCTCTCTTGTGTACGTTTTGAAATCAACAGGTAGACTACACC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     605585 45 -   1829203 GGTCATCTCTTGTGTACTTTTTAAAATCAATGGATAGAGTATAGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30852836 44 + 171630274 GGTCTTCTCTTGCATACATTTT-AAACCAATGGATAGAGTATATC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1266896 43 -   1771730 -GTCTTCTCTTGCATATATTTT-AAACCAATGGATAGAGTACATC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     452146 44 -    486031 GATCTTCTCTTGCATACATTTT-AAACCAATGGATAGAGTACATC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           611837 44 +  18854210 GATCCTCTCTCGTGTACTATTTAAAAT-AGGACATAGAGCACATC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T

a score=565327.000000
s hg38.chr6_GL000254v2_alt  1800403 56 +   4827813 AAAGTTAATTTGGATCTTCAATGGCCATCCTTGGGGTCTTTTGAGTTCCCCAAACT
s panTro5.chr6             30646559 56 + 175400573 AAAGTTAATTTGGATCTTCAATGGCCATCCTTGGGGTCTTTTGAGTTCCCCAAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070536 56 + 173848474 AAAGTTAATTTGGATCTTCAATGGCCATCCTTGGGGTCTTTTGAGTTCCCCAAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575880 56 +   2037526 AAAGTTAATTTGGATCTTCAATGGCCATCCTTGGGGTCTTTTGAGTTCCCCAAACT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75247324 56 + 122973662 AAAGTTAATTTGGATTTTTAATGACCGTCCTTGGGGTCTTTTGAGTTCCCCAAACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31172782 56 + 172585720 AAAGTTAATTTGGATCTTCAATGGCCATCCTTGGGGTCTTTTGAGTTCCCCAAACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30464913 56 - 170955103 AAAGTTAATTTGGATCTTCAATGGCCATCCTTGGGGTCTTTTGAGTTCCCCAAACT
i macFas5.chr4             I 22341 C 0
s macNem1.NW_012012100v1     721446 56 +   1495729 AAAGTTAATTTGGATCTTCAATGGCCATCCTTGGGGTCTTTTTAGTTCCCCAAACT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     798403 56 -    863181 AAAATTAATGTGGATCTTCAATGGACATCCTTGGGATCTTTTGAGTTCCCCAAACT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            30015333 56 -  71996105 AAAGTTAATTTGGATCTTCAATGGCCATCCTTGGGGTCTTTTGAGTTCCCCAAACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      28625 56 +    779361 AAAGTTAATTTGGATCTTCAATGGCCATCCTTGGGGTCTTTTGAGTTCCCCAAACT
i manLeu1.NW_012106264v1   C 0 I 15508
s colAng1.NW_012115577v1     605630 56 -   1829203 AAAATTAATGTGGATCTTCAATGGCCATCCTTGGGATCTTTTGAGTTCCCCAAACT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30852880 56 + 171630274 AAAGTTAATTTGGATCTTCAGTGGCCATCCTTGGGGTGTTTTCAGTTTCCCAAACT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1266939 56 -   1771730 AAAGTTAATTTGGATCTTCAATGGCCATCCTTGGGGTCTTTTCAGTTCCCCAAACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     452190 56 -    486031 AAAGTTAATTTAGATCTTCAATGGCCATCCTTGGGGTCTTTTCAGTTCCTCAAACT
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           611881 56 +  18854210 AAAATTAATTTGGATTTTCAGTGACCATCCTGGCAGTGTTTTGAGTTTGCCAAATT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T

a score=127197.000000
s hg38.chr6_GL000254v2_alt  1800459 14 +   4827813 TGTCTTTCTTAAAA
s panTro5.chr6             30646615 14 + 175400573 TGTCTTTCTTAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070592 14 + 173848474 TGTCTTTCTTAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575936 14 +   2037526 TGTCTTTCTTAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75247380 14 + 122973662 TGTCTTTCTTAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31172838 14 + 172585720 TGTCTTTCTTAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30464969 14 - 170955103 TGTCTTTCTTAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     721502 14 +   1495729 TGTCTTTCTTAAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     798459 14 -    863181 TGTCTTTCTTAAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            30015389 14 -  71996105 TGTCTTTCTTAAAA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     605686 14 -   1829203 TGTCTTTCTTAAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30852936 14 + 171630274 TGTCTTTCTTAAAA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1266995 14 -   1771730 TGTCTTTCTTAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     452246 14 -    486031 TGTCTTTCTTAAAA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           611937 14 +  18854210 AATCTTGCTTAGAA
i otoGar3.GL873550         C 0 T 18984
e mm10.chr17               58756926 415 -  94987271 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=9100.000000
s hg38.chr6_GL000254v2_alt  1800473 1 +   4827813 C
s panTro5.chr6             30646629 1 + 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070606 1 + 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575950 1 +   2037526 C
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75247394 1 + 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31172852 1 + 172585720 C
i rheMac8.chr4             C 0 I 1063
s macFas5.chr4             30464983 1 - 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     721516 1 +   1495729 C
i macNem1.NW_012012100v1   C 0 T 24871
s cerAty1.NW_012002535v1     798473 1 -    863181 C
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            30015403 1 -  71996105 C
i chlSab2.chr17            C 0 I 1113
s colAng1.NW_012115577v1     605700 1 -   1829203 C
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30852950 1 + 171630274 C
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1267009 1 -   1771730 C
i cebCap1.NW_016107755v1   C 0 I 760
s aotNan1.NW_018496901v1     452260 1 -    486031 C
i aotNan1.NW_018496901v1   C 0 I 747
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=20776.000000
s hg38.chr6_GL000254v2_alt  1800474 8 +   4827813 TAAAGTAg
s panTro5.chr6             30646630 8 + 175400573 TAAACTAg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070607 8 + 173848474 TAAACTAg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575951 8 +   2037526 TAAACTAg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75247395 8 + 122973662 AAAACTAg
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30464984 8 - 170955103 AAAACTAG
i macFas5.chr4             C 0 I 1056
s cerAty1.NW_012002535v1     798474 8 -    863181 AAAACTAg
i cerAty1.NW_012002535v1   C 0 C 0
s colAng1.NW_012115577v1     605701 8 -   1829203 AAAACTAg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30852951 8 + 171630274 AAAACTAG
i calJac3.chr4             C 0 I 1203
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e aotNan1.NW_018496901v1     452261 747 -    486031 I
e cebCap1.NW_016107755v1    1267010 760 -   1771730 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            30015404 1113 -  71996105 I
e macNem1.NW_012012100v1     721517 24871 +   1495729 T
e rheMac8.chr4             31172853 1063 + 172585720 I

a score=4701.000000
s hg38.chr6_GL000254v2_alt  1800482 3 +   4827813 gct
s panTro5.chr6             30646638 3 + 175400573 gcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070615 3 + 173848474 gcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575959 3 +   2037526 gcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75247403 3 + 122973662 gcc
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     798482 3 -    863181 gct
i cerAty1.NW_012002535v1   C 0 C 0
s colAng1.NW_012115577v1     605709 3 -   1829203 gct
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e aotNan1.NW_018496901v1     452261 747 -    486031 I
e cebCap1.NW_016107755v1    1267010 760 -   1771730 I
e calJac3.chr4             30852959 1203 + 171630274 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            30015404 1113 -  71996105 I
e macNem1.NW_012012100v1     721517 24871 +   1495729 T
e macFas5.chr4             30464992 1056 - 170955103 I
e rheMac8.chr4             31172853 1063 + 172585720 I

a score=439178.000000
s hg38.chr6_GL000254v2_alt  1800485 196 +   4827813 gggcgcggtggctcacgccggtaatcccagcactttgggaagtcgaggcgggcagatcacgaggtcaggagattaagaccatcctggcttgcacggtgaaacctcgtctctact--aaaaacacaa-aaaattagctgggcatggtggcaggtgcctgtagtcccagctactctgg-gaggctgaggcagaagaatggtg
s panTro5.chr6             30646641 196 + 175400573 ggacgcggtggctcacgccggtaatcccagcactttgggaagtcgaggcgggcagatcacgaggtcaggagattgagaccatcctggcttgcacggtgaaacctcatctctact--aaaaacacaa-aaaattagctgagcatggtggcaggtgcctgtagtcccagctactctgg-gaggctgaggcaggagaatggtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070618 196 + 173848474 ggacgcggtggctcacgccggtaatcccagcactttgggaagtcgaggcgggcagatcacgaggtcaggagattgagaccatcctggcttgcacggtgaaacctcatctctact--aaaaacacaa-aaaattagctgagcatggtggcaggtgcctgtagtcccagctactctgg-gaagctgaggcaggagaatggtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     575962 196 +   2037526 ggacgcggtggctcacgccggtaatcccagcactttgggaagtcgaggcgggcagatcacgaggtcaggagattgagaccatgctggcttgcacggtgaaacctcatctctact--aaaaacacaa-aaaattagctgagcatggtggcaggtgcctgtagtcccagctactctgg-gaggctgaggcaggagaatggtt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75247406 196 + 122973662 gggcacagtggctcaagccagtaatcccagcactttgggaggccgagccaggcagatcacgaggtcaggagattgagaccaccctggctagcacggtgaaaccttgtctctact--aaaaatacaa-aaaattagctgggcatggtggcaggtgcctgtaggcccagctactccgg-gaggcaaaggcaggagaatggcg
i nomLeu3.chr1a            C 0 I 1084
s cerAty1.NW_012002535v1     798485 196 -    863181 gggcatggtggctcacgcctgtaatcccagcactttggg-ggctgaggcaggcagatcacgaggtcaggagattgagaccatcttggctagcacggtgaaaccccgtctcaccc--aaaaatacaa-aaaattagccgggcgtggtggcaggtgcctgtagtccccgccactctggtgaggctgaggcaggagaatggtg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            30016517 198 -  71996105 gggcgcggtggctcaagcctgtaatcccagcactttgggaggccgagacgggcggatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccctgtctctactaaaaaaatacaagaaaattagccgggcgtggtggcaggcgcctgtagtcccagctactcag--gaggctgaggcaggagaatggcg
i chlSab2.chr17            I 1113 C 0
s colAng1.NW_012115577v1     605712 195 -   1829203 gggcatggtggctcaagcctgtaatcccagcactttggg-ggctgaggcaggcagatcacgaggtcaggagattgagaccatcttggctagcacggtgaaaccccgtctctcct--aaaaatacaa-aaaattagccgggagtggtggcaggtgcctgtagtccccgctactctgg-gaggctgaggcaggagaatggtg
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e aotNan1.NW_018496901v1     452261 747 -    486031 I
e cebCap1.NW_016107755v1    1267010 760 -   1771730 I
e calJac3.chr4             30852959 1203 + 171630274 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e macNem1.NW_012012100v1     721517 24871 +   1495729 T
e macFas5.chr4             30464992 1056 - 170955103 I
e rheMac8.chr4             31172853 1063 + 172585720 I

a score=4431.000000
s hg38.chr6_GL000254v2_alt  1800681 2 +   4827813 tg
s panTro5.chr6             30646837 2 + 175400573 tg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070814 2 + 173848474 tg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     576158 2 +   2037526 tg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75248686 2 + 122973662 tg
i nomLeu3.chr1a            I 1084 C 0
s cerAty1.NW_012002535v1     798681 2 -    863181 tg
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            30016715 2 -  71996105 ta
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     605907 2 -   1829203 tg
i colAng1.NW_012115577v1   C 0 I 1395
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e aotNan1.NW_018496901v1     452261 747 -    486031 I
e cebCap1.NW_016107755v1    1267010 760 -   1771730 I
e calJac3.chr4             30852959 1203 + 171630274 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e macNem1.NW_012012100v1     721517 24871 +   1495729 T
e macFas5.chr4             30464992 1056 - 170955103 I
e rheMac8.chr4             31172853 1063 + 172585720 I

a score=69212.000000
s hg38.chr6_GL000254v2_alt  1800683 29 +   4827813 aatccgggaggcggagcttgcagtgagcc
s panTro5.chr6             30646839 29 + 175400573 aatccgggaggcggagcttgcagtgagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070816 29 + 173848474 aatccgggaggcggagcttgcagtgagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     576160 29 +   2037526 aatccgggaggcggagcttgcagtgagcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75248688 29 + 122973662 aacccaggaggcagagtttgcagtgagcc
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     798683 29 -    863181 aacccgagaggcggaggttgcagtgagcc
i cerAty1.NW_012002535v1   C 0 I 7153
s chlSab2.chr17            30016717 29 -  71996105 aacccgggaggcggagcttgcagtgagcc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     607304 29 -   1829203 aatccaggaggcggaagttgcagtgagcc
i colAng1.NW_012115577v1   I 1395 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e aotNan1.NW_018496901v1     452261 747 -    486031 I
e cebCap1.NW_016107755v1    1267010 760 -   1771730 I
e calJac3.chr4             30852959 1203 + 171630274 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e macNem1.NW_012012100v1     721517 24871 +   1495729 T
e macFas5.chr4             30464992 1056 - 170955103 I
e rheMac8.chr4             31172853 1063 + 172585720 I

a score=94943.000000
s hg38.chr6_GL000254v2_alt  1800712 88 +   4827813 cagatccagccactgcactacagcctgccg-acagagtgagaatccatcttaaaaaaaaaaaaaaagaaaagaaaagaaaagaaaaaag
s panTro5.chr6             30646868 77 + 175400573 cagatccagccactgcactacagcctgccg-acagagtgagactccatcttaaaaa-----------aaaagaaaagaaaagaaaaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070845 72 + 173848474 cagatccagccactgcactacagcctgccg-acagagtgagactccatcttaaaaaa----------aaaagaaaag------aaaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     576189 87 +   2037526 cagatccagccactgcactacagcctgccg-acagagtgagactccatcttaaaaaaaaaaaaaag-aaaagaaaagaaaagaaaaaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75248717 88 + 122973662 aagatccagccactgtacttcagcctggcg-acagagtgagattccatctcaaaaaaaaaaaaaaaaaaaagaaaaagaaagaaagaag
i nomLeu3.chr1a            C 0 I 20
s chlSab2.chr17            30016746 71 -  71996105 gagattgcgccactgcactccagcctggggcacacagcaagactccgtctcaaaaaa----------aaaaaaaaaaaaaa--------
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     607333 74 -   1829203 aagatccagctactgcactccagcctggca-acagagtaagactccaactcaaaaaa----------aaaaggaaaaaagaaaaa----
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e aotNan1.NW_018496901v1     452261 747 -    486031 I
e cebCap1.NW_016107755v1    1267010 760 -   1771730 I
e calJac3.chr4             30852959 1203 + 171630274 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e cerAty1.NW_012002535v1     798712 7153 -    863181 I
e macNem1.NW_012012100v1     721517 24871 +   1495729 T
e macFas5.chr4             30464992 1056 - 170955103 I
e rheMac8.chr4             31172853 1063 + 172585720 I

a score=1365.000000
s hg38.chr6_GL000254v2_alt  1800800 1 +   4827813 a
s panTro5.chr6             30646945 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070917 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     576276 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75248825 1 + 122973662 a
i nomLeu3.chr1a            I 20 C 0
s cerAty1.NW_012002535v1     805865 1 -    863181 a
i cerAty1.NW_012002535v1   I 7153 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e aotNan1.NW_018496901v1     452261 747 -    486031 I
e cebCap1.NW_016107755v1    1267010 760 -   1771730 I
e calJac3.chr4             30852959 1203 + 171630274 I
e colAng1.NW_012115577v1     607407 0 -   1829203 C
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            30016817 0 -  71996105 C
e macNem1.NW_012012100v1     721517 24871 +   1495729 T
e macFas5.chr4             30464992 1056 - 170955103 I
e rheMac8.chr4             31172853 1063 + 172585720 I

a score=23236.000000
s hg38.chr6_GL000254v2_alt  1800801 9 +   4827813 aagaaaTTT
s panTro5.chr6             30646946 9 + 175400573 aaGAAATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070918 9 + 173848474 aagaaaTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     576277 9 +   2037526 aagaaaTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75248826 9 + 122973662 aagaaaTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31173916 9 + 172585720 AAGAAAATT
i rheMac8.chr4             I 1063 C 0
s macFas5.chr4             30466048 9 - 170955103 AAGAAAATT
i macFas5.chr4             I 1056 C 0
s cerAty1.NW_012002535v1     805866 9 -    863181 aagaaaTGT
i cerAty1.NW_012002535v1   C 0 C 0
s colAng1.NW_012115577v1     607407 7 -   1829203 --gaaaTTT
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e aotNan1.NW_018496901v1     452261 747 -    486031 I
e cebCap1.NW_016107755v1    1267010 760 -   1771730 I
e calJac3.chr4             30852959 1203 + 171630274 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            30016817 0 -  71996105 C
e macNem1.NW_012012100v1     721517 24871 +   1495729 T

a score=529868.000000
s hg38.chr6_GL000254v2_alt  1800810 102 +   4827813 CTGCATTACCTATGGATGTTAAATCTACTTGAGTAGACTTTAATTCCAAGTTTGTGAATAGCTTTTCTTCAAAACATGCTGAACTTGGTAAAAGAGCCAGCA
s panTro5.chr6             30646955 102 + 175400573 CTGCATTACCTATGGATGTTAAATCTACTTGAGTAGACTTTAATTCCAAGTTTGTGAATAGCTTTTCTTCAAAACATGCTGAACTTGGTAAAAGACCCAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31070927 102 + 173848474 CTGCATTACCTATGGATGTTAAATCTACTTGAGTAGACTTTAATTCCAAGTTTGTGAATAGCTTTTCTTCAAAACATGCTGAACTTGGTAAAAGAGCCAGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     576286 102 +   2037526 CTGCATTACCTATGGATGTTAAATCTACTTGAGTAGACTTTAATTCCAAGTTTGTGAATAGCTTTTCTTCAAAACATGCTGAACTTGGTAAAAGAGCCAGCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75248835 102 + 122973662 CTGCATTACCTATGGATGTTAAATCTACCTGAGTAGACTTTAATTCTAAGTTTGTGAATAGCTTTTCTTCAAAACATTCCGAACTTGGTAAAAGAGCCAGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31173925 102 + 172585720 CTGCATTACCTATAGATGTTAAATCTACTTGAGTAGCCTTTAATTCTAAGTTTGTGAATGGCTTTTCTTCAAAACGTTCTGAGCTTGGTAAAAGAGCCAGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30466057 102 - 170955103 CTGCATTACCTATAGATGTTAAATCTACTTGAGTAGCCTTTAATTCTAAGTTTGTGAATGGCTTTTCTTCAAAACGTTCTGAGCTTGGTAAAAGAGCCAGCA
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     805875 102 -    863181 CTGCATTACCTAAGGATGTTAAATCTACTTCAGTAGACTTTCATTCTAAGTTTGTGAATAGCTTTTCTTCAAAACATTCTGAACTTGGTAAAAGAACCAGCA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            30016817  81 -  71996105 ---------------------aaTCTACTTGAGTAGCCTTTAATTCTAAGTTTGTGAATGGCTTTTCTTCAAAACGTTCTGAGCTTGGTAAAAGAGCCAGCA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     607414 102 -   1829203 CTGCAATACCTAAGGATGTTAAATCTACTTCAGTAGACTTTCATTCTAAGTTTGTGAATAGCTTTTCTTCAAAACATTCTGAACTTGGTGAAAGAGCCAGCA
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1    1267770 102 -   1771730 CTGCATTACTTATGGATATTAAATCCACCTGAGCAGTCTTTAATTCTGAATTTGTGAATGGCTTTTCTTCAAAACATTCCGAGCTTGGTAAAAgagtcagca
i cebCap1.NW_016107755v1   I 760 I 6
s aotNan1.NW_018496901v1     453008 102 -    486031 CTGCATTACCTATGGATATTAAATCTACCTGAGTAGCCTTTAATTCTGAATTTATGAATGGCTTTTCTTCAAAACATTCTGAGCTTGGTAAAACAGCCAGCA
i aotNan1.NW_018496901v1   I 747 I 3
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e calJac3.chr4             30852959 1203 + 171630274 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e macNem1.NW_012012100v1     721517 24871 +   1495729 T

a score=-5299.000000
s hg38.chr6_GL000254v2_alt  1800912 5 +   4827813 ATTTA--
s panTro5.chr6             30647057 5 + 175400573 ATTTA--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31071029 5 + 173848474 ATTTA--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     576388 5 +   2037526 ATTTA--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75248937 5 + 122973662 TGAAA--
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             31174027 5 + 172585720 TGAAA--
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             30466159 5 - 170955103 TGAAA--
i macFas5.chr4             C 0 I 1
s cerAty1.NW_012002535v1     805977 5 -    863181 TAAAA--
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            30016898 5 -  71996105 TGAAA--
i chlSab2.chr17            C 0 I 1
s colAng1.NW_012115577v1     607516 5 -   1829203 TGAAA--
i colAng1.NW_012115577v1   C 0 I 1
s aotNan1.NW_018496901v1     453113 3 -    486031 ----AGT
i aotNan1.NW_018496901v1   I 3 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e cebCap1.NW_016107755v1    1267872 6 -   1771730 I
e calJac3.chr4             30852959 1203 + 171630274 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e macNem1.NW_012012100v1     721517 24871 +   1495729 T

a score=400611.000000
s hg38.chr6_GL000254v2_alt  1800917 79 +   4827813 GGGAAACTATGTGCACTTCTGATCTTGTCCATTTGATAAATCACCTGCCTGTCCCCTTGAGGACCCTACTAAGAAAACT
s panTro5.chr6             30647062 79 + 175400573 GGGAAACTATGTGCACTTCTGATCTTGTCCATTTGACAAATCACCTGCCTGTGGCCTTGAGGACCCTACTAAGAAAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31071034 79 + 173848474 GGGAAACTATGTGCACTTCTGATCTTGTCCATTTGACAAATCACCTGCCTGTCGCCTTGAGGACCCTACTAAGAAAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     576393 79 +   2037526 GGGAAACTATGTGCACTTCTGATCTTGTCCATTTGACAAATCACCTGCCTGTCACCTTGAGGACCCTACTAAGAAAACT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75248943 79 + 122973662 GGGAAACTATGTGCATTTCTGATCTTGTCCATTTGACAAATCACCTGCCTGTCCCCTTGAGGACCCTACTAAGAAAATT
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             31174033 79 + 172585720 GGGAAACTATGCCCGCTTCTGATCTTGTCCATTTGGCAAATCAGTTGTCTGACCCCTTGAGGACACTATTAAGAAAACT
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30466165 79 - 170955103 AGGAAACTATGCCCACTTCTGATCTTGTCCATTTGGCAAATCAGTTGTCTGACCCCTTGAGGACACTATTAAGAAAACT
i macFas5.chr4             I 1 C 0
s cerAty1.NW_012002535v1     805983 79 -    863181 GGGAAACTATGCCCACTTCTGATCTTCTCCATTTGACAAATCACCTGCCTGTTCCCTTGAGGACCCTACTAAGAAAAGT
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            30016904 79 -  71996105 GGGAAACTATGCCCACTTCTGATCTTGTCCATTTGGCAAATCAGTTGTCTGACCCCTTGAGAACATTATTAAGAAAACT
i chlSab2.chr17            I 1 C 0
s colAng1.NW_012115577v1     607522 79 -   1829203 GGGAAATGATGCCCACTTCTGATCTTCTCCATTTGACAAATCACCTGCCTGTCCCTTTGAGGACCCTACTAAGAAAACT
i colAng1.NW_012115577v1   I 1 C 0
s cebCap1.NW_016107755v1    1267878 77 -   1771730 gggaaac--tgcccacttctgatcttgtccatttggcaaatcagctgcctgcccccTTGAGGACACTACCAAGAAAACT
i cebCap1.NW_016107755v1   I 6 T 89464
s aotNan1.NW_018496901v1     453116 79 -    486031 GGGAAATTATGCCCACTTCTGATCTCGTCCATTTGGCAAATCAGCTGCCTGCCCCCTTGAGGACGTTACCAAGAAAACT
i aotNan1.NW_018496901v1   C 0 T 83751
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e calJac3.chr4             30852959 1203 + 171630274 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e macNem1.NW_012012100v1     721517 24871 +   1495729 T

a score=19206.000000
s hg38.chr6_GL000254v2_alt  1800996 3 +   4827813 GCT
s panTro5.chr6             30647141 3 + 175400573 GCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31071113 3 + 173848474 GCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     576472 3 +   2037526 GCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75249022 3 + 122973662 GCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31174112 3 + 172585720 GCT
i rheMac8.chr4             C 0 T 23669
s macFas5.chr4             30466244 3 - 170955103 GCT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002535v1     806062 3 -    863181 GCT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            30016983 3 -  71996105 GCT
i chlSab2.chr17            C 0 T 24139
s colAng1.NW_012115577v1     607601 3 -   1829203 GCT
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1    1178491 3 -   1771730 GCT
i cebCap1.NW_016107755v1   T 89464 C 0
s aotNan1.NW_018496901v1     369444 3 -    486031 GCT
i aotNan1.NW_018496901v1   T 83751 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e calJac3.chr4             30852959 1203 + 171630274 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e macNem1.NW_012012100v1     721517 24871 +   1495729 T

a score=4713.000000
s hg38.chr6_GL000254v2_alt  1800999  9 +   4827813 T--AAAAACtt
s panTro5.chr6             30647144  9 + 175400573 T--AAAAACtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31071116  9 + 173848474 T--AAAAACtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     576475  9 +   2037526 T--AAAAACtt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75249025 11 + 122973662 TTAAAAAAAtt
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30466247  8 - 170955103 ---AAAATTCT
i macFas5.chr4             C 0 T 23683
s cerAty1.NW_012002535v1     806065  9 -    863181 T--AAAAtttt
i cerAty1.NW_012002535v1   C 0 I 2
s colAng1.NW_012115577v1     607604  9 -   1829203 T--AAAAtttt
i colAng1.NW_012115577v1   C 0 I 2
s cebCap1.NW_016107755v1    1178494  6 -   1771730 --AAAAAA---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     369447  6 -    486031 --AAAAAA---
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e calJac3.chr4             30852959 1203 + 171630274 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            30016986 24139 -  71996105 T
e macNem1.NW_012012100v1     721517 24871 +   1495729 T
e rheMac8.chr4             31174115 23669 + 172585720 T

a score=637297.000000
s hg38.chr6_GL000254v2_alt  1801008 229 +   4827813 tttttaaaatttttt-ctttttgagatgaagtctcactctgtc-accaggctggagtgcagtggtgcagtctcgactcactgaaacctccacctcctgggttcaagcaattatcctgcctcagcctcccgagtagctgggattacaggtgcccaccaccatgcccagctaattttttgtatttttagtagagacgaggtttcaccatgttggccaggctggtcttgaattc
s panTro5.chr6             30647153 228 + 175400573 ttttt-aaatttttt-ctttttgagatgaagtctcactctgtc-accaggctggagtgcagtggtgcagtctcgactcactgaaacctccacctcctgggttcaagcaattatcctgcctcagcctcccgagtagctgggattacaggtgcccaccaccatgcccagctaattttttgtatttttagtagagacgaggcttcaccatgttggccaggctgatcttgaattc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31071125 226 + 173848474 ttttt-aa--ttttt-ctttttgagatgaagtctcactctgtc-accaggctggagtgcagtggtgcagtctcgactcactgaaacctccacctcctgggttcaagcaattatcctgcctcagcctcccgagtagctgggattacaggtgcccaccaccatgcccagctaattttttgtatttttagtagagacgaggcttcaccatgttggccaggctgatcttgaattc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     576484 228 +   2037526 ttttt-taatttttt-ctttttgagatgaagtctcactctgtc-accaggctggagtgcagtggtgcagtctcgactcactgaaacctccacctcctgggttcaagcaattatcctgcctcagcctccctagtagctgggattacaggtgcccaccaccatgcccagctaattttttgtatttttagtagagacgaggcttcaccatgttggccaggctgatcttgaattc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75249036 228 + 122973662 ttttt-taatttttt-ctttttgaaacggagtctcactctgtc-accaagctggagtgcagtggtgcagtcttgactcactgaaacctccacctcctgggttcaagagattatcctgcctcagcctcccgagtagctggaattacaggtgcccaccaccatgcccagctaattttttgtatttttagtagaggtggggtttcaccatgttggccaggctggtcttgaattc
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     806076 228 -    863181 ttctt-aattttttc-ttttttgagacggagtctcactctgtc-accaggctggagttcagtggtgcagtcccgactcactgaaacctccacctcctgggttcaagcgattatcctgcctcagcctcccaagtagctgggattacaggtgcccaccaccatgcccagctaattttttgtatttttagtagagacggggtttcaccatgttgaccagtctggtcttgaattc
i cerAty1.NW_012002535v1   I 2 C 0
s colAng1.NW_012115577v1     607615 228 -   1829203 ttctt-aattttttc-ttttttgagatggagtctcactctgtc-accaggctggagttcagtggtgcagtcccgactcactgaaaactccacctcctgggttcaagcgattatcctgcctcagccttccgagtagctgggattacaggtgcccaccactatgcccaggtaattttttgtatttttagtagagacggggtttcaccatgttgaccagtctggtcttgaattc
i colAng1.NW_012115577v1   I 2 C 0
s cebCap1.NW_016107755v1    1178500 226 -   1771730 -----Atttttttttgtttttttggagacagtctcactctgtctcccaggctggagtgcagtggcacagtctcgggtcactgaaacttccacctcctgggttcaagcaattctcctgcctccacctcctgagtagctaggattacaggtgcttaccaccatgcctggctaattttttgtatttttagtagagatggaatttcaccatattggacaggctggtctcaaattc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     369453 225 -    486031 -----AAAAtttttt-tttttttggagacagtctcactctgtctcccaagctggagtgcagtggcacagtctcaggtcactgaaacctccacctcctgcattcaagcaattctcctgcctccacctcctgagtagctaggattacaggcgcttaccaccatgcctggctaattttttgcatttttagtagagatggaatttcaccatattggccaggctggtctcaaattc
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e calJac3.chr4             30852959 1203 + 171630274 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            30016986 24139 -  71996105 T
e macNem1.NW_012012100v1     721517 24871 +   1495729 T
e macFas5.chr4             30466255 23683 - 170955103 T
e rheMac8.chr4             31174115 23669 + 172585720 T

a score=42319.000000
s hg38.chr6_GL000254v2_alt  1801237 11 +   4827813 ctgacctcagg
s panTro5.chr6             30647381 11 + 175400573 ctgacctcagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31071351 11 + 173848474 ctgacctcagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     576712 11 +   2037526 ctgacctcagg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75249264 11 + 122973662 ctgacctcagg
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     806304 11 -    863181 ctgacctcaag
i cerAty1.NW_012002535v1   C 0 C 0
s colAng1.NW_012115577v1     607843 11 -   1829203 ctgacctcaag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30854162 11 + 171630274 CTGACCTTGGA
i calJac3.chr4             I 1203 C 0
s cebCap1.NW_016107755v1    1178726 11 -   1771730 ctgacctcagg
i cebCap1.NW_016107755v1   C 0 I 89803
s aotNan1.NW_018496901v1     369678 11 -    486031 ctgacctcagg
i aotNan1.NW_018496901v1   C 0 I 84089
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            30016986 24139 -  71996105 T
e macNem1.NW_012012100v1     721517 24871 +   1495729 T
e macFas5.chr4             30466255 23683 - 170955103 T
e rheMac8.chr4             31174115 23669 + 172585720 T

a score=2933.000000
s hg38.chr6_GL000254v2_alt  1801248 3 +   4827813 AAT-
s panTro5.chr6             30647392 3 + 175400573 AAT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31071362 3 + 173848474 aat-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     576723 3 +   2037526 AAT-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75249275 3 + 122973662 AAT-
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     806315 3 -    863181 AAT-
i cerAty1.NW_012002535v1   C 0 C 0
s colAng1.NW_012115577v1     607854 3 -   1829203 AAT-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30854173 3 + 171630274 -GTC
i calJac3.chr4             C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e aotNan1.NW_018496901v1     369689 84089 -    486031 I
e cebCap1.NW_016107755v1    1178737 89803 -   1771730 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            30016986 24139 -  71996105 T
e macNem1.NW_012012100v1     721517 24871 +   1495729 T
e macFas5.chr4             30466255 23683 - 170955103 T
e rheMac8.chr4             31174115 23669 + 172585720 T

a score=14076.000000
s hg38.chr6_GL000254v2_alt  1801251 4 +   4827813 CCCT
s panTro5.chr6             30647395 4 + 175400573 CCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31071365 4 + 173848474 ccct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     576726 4 +   2037526 CCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75249278 4 + 122973662 CCCT
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     806318 4 -    863181 CCCT
i cerAty1.NW_012002535v1   C 0 C 0
s colAng1.NW_012115577v1     607857 4 -   1829203 CCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30854176 4 + 171630274 CCCT
i calJac3.chr4             C 0 I 3
s aotNan1.NW_018496901v1     453778 4 -    486031 CCCT
i aotNan1.NW_018496901v1   I 84089 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e cebCap1.NW_016107755v1    1178737 89803 -   1771730 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            30016986 24139 -  71996105 T
e macNem1.NW_012012100v1     721517 24871 +   1495729 T
e macFas5.chr4             30466255 23683 - 170955103 T
e rheMac8.chr4             31174115 23669 + 172585720 T

a score=342837.000000
s hg38.chr6_GL000254v2_alt  1801255 92 +   4827813 GACTCTCCAAATGTCCCCACTTGTTATGTCATTCCCACTGACAAAACAAAAATAATGCTATCTtgtgttaggctgttcttgcattgctataa
s panTro5.chr6             30647399 92 + 175400573 GACTCTCCAAATGTCCCCACTTGTTATGTCATTCCCACTGACAAAACAAAAATAATGCTATCTtgtgttaggctgttcttgcattgctataa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31071369 92 + 173848474 gcctcTCCGAATGTCCCCGCTTGTTATGTCATTCCCACTGACAAAACAAAAATAATGCTATCTtgtgttaggctgttcttgcattgctataa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     576730 92 +   2037526 GACTCTCCAAATGTCCCCACTTGTTATGTCATTCCCACTGACAAAACAAAAATAATGCTATCTtgtgttaggctgttcttgcattgctataa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75249282 92 + 122973662 GACTCTCCAAATGTCCTCACTTGTTATGTCATTCCCACTGACAAAACAAAAATAATGCTACCTtgtattaggctgttcttgcattgctataa
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     806322 92 -    863181 GACTCTCCAAGTGTCCTCACTTGTTATGTCATTCCCACTGACAAAATAAAAACAATGCTACCTtgtgttaggctgttcttgcattgctataa
i cerAty1.NW_012002535v1   C 0 C 0
s colAng1.NW_012115577v1     607861 92 -   1829203 GACTCTCCAAGTGTCCTCACTTCTTATGTCATTCCCACTGACAAAATAAAAACAATGCTACCTtgtgttaggctgttcttgcattgctataa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30854183 92 + 171630274 GACTCTCCAAATTCCCTCACTTGTTATGTCATTCCCACTGAGGAAACAAAAAGAATGCTACCCtgtgttaggttgttcttgcattgctataa
i calJac3.chr4             I 3 C 0
s cebCap1.NW_016107755v1    1268540 92 -   1771730 GACTCTCAAAATTCCCTCACTTGTTATGTCATTCCCACTCAGAAAACAAAAACAATGCTACCCtgtgttaggctgttcttgcattgctataa
i cebCap1.NW_016107755v1   I 89803 T 27423
s aotNan1.NW_018496901v1     453782 92 -    486031 GACTCTCCAAATTCCCTCACTTGTTATGTCATTGCCACTGAGAAAACAAAAACAATGCTACCCTGTGTTAGGTTGTTCTTGCAGTGCCATAA
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            30016986 24139 -  71996105 T
e macNem1.NW_012012100v1     721517 24871 +   1495729 T
e macFas5.chr4             30466255 23683 - 170955103 T
e rheMac8.chr4             31174115 23669 + 172585720 T

a score=5961.000000
s hg38.chr6_GL000254v2_alt  1801347 4 +   4827813 ag-aa
s panTro5.chr6             30647491 4 + 175400573 ag-aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31071461 4 + 173848474 ag-aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     576822 4 +   2037526 ag-aa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75249374 5 + 122973662 agaaa
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     806414 5 -    863181 agaaa
i cerAty1.NW_012002535v1   C 0 C 0
s colAng1.NW_012115577v1     607953 5 -   1829203 agaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30854275 4 + 171630274 ag-aa
i calJac3.chr4             C 0 I 2797
s aotNan1.NW_018496901v1     453874 4 -    486031 AG-AA
i aotNan1.NW_018496901v1   C 0 T 21609
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e cebCap1.NW_016107755v1    1268632 27423 -   1771730 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            30016986 24139 -  71996105 T
e macNem1.NW_012012100v1     721517 24871 +   1495729 T
e macFas5.chr4             30466255 23683 - 170955103 T
e rheMac8.chr4             31174115 23669 + 172585720 T

a score=1062131.000000
s hg38.chr6_GL000254v2_alt  1801351 580 +   4827813 tacatgagactgggtaatttataaagaaaaatgagtttaattggctcacagttctgcaggctttatgggaagcacggtgctgggcatctgatcagcttctgatgaggtcgcaggaagcttaccatcatggcagaaggcaataggggagcaggcacgtcacatagcgaaagcaggaacgagagagaga----gtgggaggggaaggacgccacacacttttaaacaaccagctctcactatttcaaagacagcaccaaggggacggtgctaaaccattcctgagaaatgtgcccccatgatccaatcacctcccaccaagacccacctccaacactggggattacaattcaacatgaaattggggtggggacaaatatacaaactacatcaCACCCTTTCActgctgaatctaatacctgtctctgtataggcaaaactgttgatattggcaaactttataatatacctcctataaaaatccagcttgatccatcaaaacccctgcctaatatcaaacaatatccacttaaaccagatggtgttataagtcattaaacctattacagaaggacataaaaagcaag
s panTro5.chr6             30647495 578 + 175400573 tacatgagactgggtaatttataaagaaaaatgagtttaattggctcacagttctgcaggctttatgggaagcacggtgctgggcatctgatcagcttctgatgaggtcacaggaagcttaccatcatggcagaaggcaataggggagcaggcacgtcacatagcaaaagcaggaac--aagagaga----gtgggaggggaaggatgccacacacttttaaacaaccagctctcactatttcaaagacagcaccaaggggacggtgctaaaccattcctgagaaatgtgcccccatgatccaatcacctcccaccaagacccacctccaacattggggattacaattcaacatgaaattggggtggggacaaatatacaaactatatcaCACCCTTTCActgctgaatctaatacctgtctctgtataggcaaaactgttgatattggcaaactttatagtatacctcctataaaaatccagcttgatccatcaaaacccctgcctaatatcaaacaatatccacttaaaccagatggtgttataagtcattaaacctattacagaaggacgtaaaaaacaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31071465 578 + 173848474 tacatgagactgggtaatttataaagaaaaatgagtttaattggctcacagttctgcaggctttatgggaagcacggtgctgggcatctgatcagcttctgatgaggtcacaggaagcttaccatcatggcagaaggcaataggggagcaggcatgtcacatagcaaaagcaggaac--aagagaga----gtgggaggggaaggatgccacacacttttaaacaaccagctctcactatttcaaagacagcaccaaggggacggtgctaaaccattcctgagaaatgtgcccccatgatccaatcatctcccaccaagacccacctccaacattggggattacaattcaacatgaaattggggtggggacaaatatacaaactatatcaCACCCTTTCActgctgaatctaatacctgtctctgtataggcaaaactgttgatattggcaaactttatagtatacctcctataaaaatccagcttgatccatcaaaacccctgcctaatatcaaacaatatccacttaaaccagatggtgttataagtcattaaacctattacagaaggacataaaaaacaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     576826 577 +   2037526 tacatgagactgggtaatttataaagaaaaatgagtttaattggctcacagttctgcaggctttatgggaagcacggtgctgggcatctgatcagcttctgatgaggtcacaggaagcttaccatcatggcagaaggcaataggggagcaggcacgtcacatagcaaaagcaggaac--aagagaga----gtgggaggggaaggatgccacacacttttaaacaaccagctctcactatttcaaagacagcaccaaggagacggtgctaaaccattcctgagaaatgtgcccccatgatccaatcacctcccaccaagacccacctccaacactggggattacaattcaacatgaaattggggtggggacaaatatacaaactatatcaCACCCTTTCActgctgaatctaatacctgtctctgtataggcaaaactgttgata-tggcaaaatttatagtatacctcctataaaaatccagcttgatccattaaaacccctgcctaatatcaaacaatatccatttaaaccagatggtgttataagtcattaaacctattacagaaggacataaaaaacaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75249379 580 + 122973662 tacatgagactgggtaatttataaagaaaaatgagtttaattggctcacagttatgcaggctttatgggaagcatggtgctgggaatctgatcaccttctgatgaggtcgcaggaagcttacgatcattgcagaaggcactaggggagtaggcatgtcacatagcgaaagtaggaacgagagagaga----gtaggaggggaaggatgccacacacttttaaacaaccagatctcactatttcaaagacagcaccaaggggacggtgctaaaccattcctgagaagtgtgcccccatgatccaatcacctcccaccaacacccacttccaacattggggattacaattcaacatgaaattggggtggggacaaatatacaaactatatcaCACCTTTTCACTGCTGAATCTGATACCTGTCTCTGTATAGGTAAAACTGTTgatattggcaaaatttatagtatacctcctataaaaatccagcttgatccatcaaaacccctgcctaatatcaaacaatatccacttaaaccagatggtgttataagtcattaaacctattacagaaggacataaaaaacaag
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     806419 582 -    863181 tacatgagactgggtaatttataaagaaaaatgagtttaattggctaacagttctgcagactttaagggaagcatggtgctgggcatctgatcagcttctgatgaggtcgcaggaagcttacaatcatggcagaaggcaataggggagcaggcacttcacaaagcaaaagcgggaac--aagagagagcgtgtgggaggggaaggatgccacacacttttaaacaaccagatctcactatttcaaagacagcaccaaggggatgctgctaaaccattcctgagaaatgtgcccccatgatccaatcacctcccaccgagacccacctccaacattggggattacagttcaacacgaaattggggtggggacatatatacaaactatatcaCATCCTTTCACCCCTGAATCtaatacctgtctctgtatagacaaaactgttgatactggcaaattttatagcatacctcctataaaaatccaacttgatccatcaaaatccctgcctaatatcaaacaatatccacttaaaccagatggcattataagccattaaacctattacagaaggacataaaaaacaag
i cerAty1.NW_012002535v1   C 0 C 0
s colAng1.NW_012115577v1     607958 580 -   1829203 tacatgagactgggtaatttataaagaaaaatgagtttaattggctcacagttctgcagactttaagggaagcatggtgctgggcatctgaacagcttctgatgaggtcgcaggaagcttacaatcatggcagaaggcaataggggagcaggcacgtcacaaagcaaaagcaggaac--gagagaga--gtgtgggaggggaaggatgtcacacgcttttaaacaaccagatctcactatttcaaagacagcaccaaggggatggtactaaaccattcctgagaaatgtgcccccatgatccaattacctcccaccgagtcccacctccaacattggggattacaattcaacacgaaattggggtggggacatatatacaaactatatcaCATCCTTTCATCCCTGAATCTAATACCTGTCTCTGTATAGACAAAACTGTTGATACTGGCAAATTTCATAGTATACctcctataaaaatccagcttgatccatcaaaacccctgcctaatatcaaacaatatccacttaaaccagatggcgttataagctattaaacgtattacagaaggacataaaaaacaag
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e cebCap1.NW_016107755v1    1268632 27423 -   1771730 T
e calJac3.chr4             30854279 2797 + 171630274 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            30016986 24139 -  71996105 T
e macNem1.NW_012012100v1     721517 24871 +   1495729 T
e macFas5.chr4             30466255 23683 - 170955103 T
e rheMac8.chr4             31174115 23669 + 172585720 T

a score=2336330.000000
s hg38.chr6_GL000254v2_alt  1801931 1113 +   4827813 gcctcattattccatgtactcatccttctaacaccctaattatacctatt--aaaaaccaaacaactgggattaaaggtttgctcaggaattctgagcaataaactatatagtgattccaagacat-cagtggttccaaatccctatatctcattaaactcacaacctattgataggaggtttttcactgtcattgatctatgaagtgcattcttcagtaatccagtggatcaggccagccagtatctttttgcctttaccttggaaggccaacaattcacctggacagtaatgcctcttgcttttactgaaaacccttcctgtgtttttcaaatattaaaggaacacttggaggagatagtttctccttaaggttccaccttactacaatatatagatggccgccttctttgctctgcttcacagatagcctatgaaaaaaatggtgtacaactgttaaagcaactgactgctaaagaccatgaagtctctgacgaaaaattgcagctagtgaaaactcagaagaaatatttgggacacttaacttcagaaaatggATTACATTTAGACCCAGATTGGCACTTTGTAATTTCTTCAGTCAAGAACCAAGTGCcacagaaaaacacagaatattataatgctgtatttgtggtgtgtaaactactcgtgtcttaagtagaaagcataaaaggtgaaccaataaaaaataataactacaa-gacttttcaacacatag----acggtaca-----------------------------aggccagctgcagtggctcatgcctgtaatcccaggacattgagaggctgaagtgaacagatcatttgaactcaggagtttcagactagcctgggcaacatggcaaaacccagtctcttt--taaaaaatggaaaaaattagctggttatggtggcacgtgtctgtggtaccacctacttaggaggctgaggtgaaaggattgcttgtgcttcggaggcagaggttgcagtgagctgagattgtgacactgcactccaggctgggtgacagagtgagatcctcatct----aaaaaa--agacatagatggtataagaagatataaatagaaacaacaaaaagttaaaaagaaagaggatggagttaaagtgtg-aattct
s panTro5.chr6             30648073 1097 + 175400573 gcctcattattccatgtactcatccttctaacaccctaattttacctatt--aaaaaacaaacaactgggattaaaggtttgctcaggaattctgagcaataaactacatagtgattccaagacat-cagtggtttcaaatccctatatctcattaaactcacaacctattgataggaggtttttcactgtcattgatctatgaagtgcattcttcagtaatccagtggatCAG------------------GCCTTTACCTTGGAAGGCCAACAATTCACCTGGACAGTAATGCCTCCTGCTTTTACTGAAAACCCTTCCTGTGTTTTTCAAATATTAAAGGAACACTTGGAGGAGATAGTTTCTCCTTAAGGTTCCACCTTACTACAATATATAGATGGCCGCCTTCTTTGCTCTGCTTCACAGATAGCCTATGAAAAAAATGGTGTACATCTGTTAAAGCAACTGACTGCTAAAGATCATGAAGTCTCTGATGAAAAATTGCAGCTAGTGAAAACTCAGAAGAAATATTTGGGACACTTAACTTCAGAAAATGGATTACATTTAGACCCAGATTGGCACTTTGTAATTTCTTCAGTCAAGAACCAAGTGCcacagaaaaacacagaatattataatgctgtatttgtggtgtgtaaactactcgtgtcttaagtagaaagcataaaaggtgaaccaataaaaaataataactacaa-gacttttcaacacatag----acagtaca-----------------------------aggccagctgcagtggctcatgcctgtaatcccaggactttgagaggctgaagtgaacagatcatttgaactcaggagtttcagactagcctgggcaacatggcaaaacccagtctctttaaaaaaaaatggaaaaaattagctggttatggtggcacatgtctgtggtaccacctacttaggaggctgaggtgaaaggattgcttgtgcttcggaggcagaggttgcagtgagctgagattgtgacactgcactccaggctggctgacagagtgagatcctcatct----ataaaa--agacatagacagtataagaagatataaatagaaacaacaaaaagttaaaaagaaagaggatggagttaaagtgtg-aatttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31072043 1096 + 173848474 gcctcattattccatgtactcatccttctaacaccctaattttacctatt--aaaaaccaaacaactggggttaaaggtttgctcaggaattctgagcaataaactacatagtgattccaagacat-cagtggtttcaaatccctatatctcattaaactcacaacctattgataggaggtttttcactgtcattgatctatgaagtgcattcttcagtaatccagtggatCAG------------------GCCTTTACCTTGGAAGGCCAACAATTCACCTGGACAGTAATGCCTCCTGCTTTTACTGAAAACCCTTCCTGTGTTTTTCAAATATTAAAGGAACACTTGGAGGAGATAGTTTCTCCTTAAGGTTCCACCTTACTACAATATATAGATGGCCGCCTTCTTTGCTCTGCTTCACAGATAGCCTATGAAAAAAATGGTGTACATCTGTTAAAGCAACTGACTGCTAAAGATCATGAAGTCTCTGACGAAAAATTGCAGCTAGTGAAAACTCAGAAGAAATATTTGGGACACTTAACTTCAGAAAATGGATTACATTTAGACCCAGATTGGCACTTTGTAATTTCTTCAGTCAAGAACCAGGTGCcacagaaaaacacagaatattataatgctgtatttgtggtgtgtaaactactcgtgtcttaagtagaaagcataaaaggtgaaccaataaaaaataataactacaa-gacttttcaacacatag----acagtaca-----------------------------aggccagctgcagtggctcatgcctgtaatcccaggactttgagaggctgaagtgaacagatcatttgaactcaggagtttcagactagcctgggcaacatggcaaaacccagtctcttt-aaaaaaaatggaaaaaattagctggttatggtggcacatgtctgtggtaccacctacttaggaggctgaggtgaaaggattgcttgtgcttcggaggcagaggttgcagtgagctgagattgtgacactgcactccaggctggctgacagagtgagatcctcatct----ataaaa--agacatagacagtataagaagatataaatagaaacaacaaaaagttaaaaagaaagaggatggagttaaagtgtg-aatttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     577403 1096 +   2037526 acctcattattccatgtactcatccttctaacaccctaattttacctatt--aaaaaccaaacaactgggattaaaggtttgctcaggaattctgagcaatgaactatatagtgattccaagacat-cagtggttccaaatccctatatctcattaaactcacaacctattgataggaggtttttcactgtcattgatctatgaagtgcattcttcagtaatccagtggatcag------------------gcctttaccttggaaggccaacaattcacctggacagtaatgcctcctgcttttactgaaaacccttcctgtgtttttcaaatattaaaggaacacttggaggagatagtttctccttaaggttccaccttactacaatatatagatggcagccttctttgctctgcttcacagatagcctatgaaaaaaatggtgtacatctgttaaagcaactgactgctaaagatcatgaagtctctgacgaaaaattgcagctagtgaaaactcagatgaaatatttgggacacttaacttcagaaaatggattACATTTAGACCCAGATTGGCACTTTGTAATTTCTTCAGTCAAGAACCAAGTGCcacagaaaaacacagaatattatagtgctgtatttgtggtgtgtaaactactcgtgtcttaagtagaaagcataaaaggtgaaccaataaaaaataataactacaa-gacttttcaacacatag----acagtaca-----------------------------aggccagctgcagtggctcatgcctgtaatcccaggactttgacaggctgaagtgaacagatcatttgaactcaggagtttcagactagcctgggcaacatggcaaaacccagtctcttt-aaaaaaaatggaaaaaattagctggttatggtggcacatgtctgtggtaccacctacttaggaggctgaggtgaaaggattgcttgtgcttcggaggcagaggttgcagtgagctgagattgtgacactgcactccaggctggctgacagagtgagatcctcatct----ataaaa--agacatagacagtataagaagatataaatagaaacaataaaaagttaaaaagaaagaggatggagttaaagtgtg-aatttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75249959 1117 + 122973662 gcctcgttattccacatactcgtccttctaacaccctaattttacctatt--aaaaacgaaacaactgtgattaaaggtttgttcaggacttctgagcaataaactatacagtgattccaagacat-cagtggttccaaatccctatatctcattaaactcacaacctattgataggaggcttttcactgtcattgatctatgaagtgcattcttcagtaatccggtagatcaggccagccagtatctttttgcctttaccttggaagatcaacaattcacctggacagtaatgcctcttgcttttactgaaaacccttcctgtgtttttcaaatattaagggaacacttggaggagatagtttctccttaaggttccaccttactacaatatatacatggctgccttctttgctctgcttcacagatagcctatgaaaaaaatggtgtacatctgttaaagcaactgaccgctaaagatcatgaagtctctaacaaaaaattgcagctagtgaaaactcagaagaaatatttgggacacttaacttcagaaaatggATTACATTTAGACCCAGATTGGCACTTTGTAATTTCTTCAGCCACGAACCAAGTGCcacagaaaaatacagaatattataatgctgtatttgtgttgtgtaaactactcatgtcttaagtagaaaggctaaaatgtgaaccaataaaaaataataactacaa-gacttttcaacacatag----acagtaca-----------------------------aggccaggcgcagcggctcatgcctataatcccaggactttgagaggctgaggtgaacagatcatttgaactcaggagtttcagaccagcctgggcaacatggcaaaacccagtctctat-ttaaaaaatagaaaaaattagctggttatggtggcacatgcctgtggtaccagctacttaggagactgaggtgaaaggattgcttgtgctcgggaggcagaggttgcagtgagctgagattgtgacactgcactccaggctgggtgacagaatgagatcctcatct----aaaaaaatagacatagacagtataagaagatataaatagaaacaacaaaaagttaaaaagaaagaggatggagttaaagtgtgaaattat
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     807001 1111 -    863181 gcctcattattccatgtactcgtccttctaacaccctaattttacctatt--aaaaacctaacaactgtgattaaaagtttgttcaggacttctgagcaataaagtatatagtgattccaaggcat-cagtgctttcaaatccctatatctcattaaactcacaacctattgatatgaggtttttcactgtcattgatctatgaagtgcattcttcagtaatccagtggatcaggccagccagtgtctttttgcctttaccttggaaggctaacaattcacctggaccgtaatgcctcttgcttttactgaaaatctttcctgcatttttcaaatattaagtggacacttggagaagatagtttctccttaagg-tccaccttactataatatatagatgacagccttctttgctctgcttcacagatagcctatgaaaaaaatggtgtacatctattaaaacaactaactgctaaagatcatgaagtctctaaagaaaaattgcagctagtgaaaactcagaaggaatatttgggacatttaacttcagaaaatggATTACATTTAGACCCAGATTGGCACTTTGTAATTTCTTCAGCCAAGAACCaagtatcacagaaaaacacagaatattataatgctgtatttgtagtgtgtaaactactcatgtcttaagtagaaaggctaaaaggtgaaccaataagaaataataactacaa-gacttttcaacacatac----acagtaca-----------------------------aggccaggtgcagtggctcatgcctataatcccaggactctgagaggctgaagtgaacagatcatttgaactcaagagtttcaggccagcctgggtaacatggcaaaacccagtatctat---aaaaaatagaaaaaattagctggttatggtggcacatgcctgtggtaccagctgcttaggaggctgaggtgaaaggattgc-tgtgcatgggaggcagaggttagagcgagctgagattgtgacactgcactccaggctgagtgacagagtgagatccccatctaaaaaaaaaa--agacatagatagtatgagaagatataaatagaaacaacaaaaagttaa----aaagaggatggagtcaaaatgtgaaatttt
i cerAty1.NW_012002535v1   C 0 C 0
s colAng1.NW_012115577v1     608538 1098 -   1829203 gcct--------------cttgtccttctaacaccctaattttacctatt--aaaaacctaacaactgtgattaaaagtttgttcaggacttctgagcaataaagtatataatgattccaaggcat-cagtggttccaaatccctatatctcattaaactcacgacctattgatatgaggtttttcactgtcactgatctatgaagtgcattcttcagtaatccagtggatcaggccagccactgtctttttgcctttaccttggaaagctaacaattcacctggacagtaatgccttttgcttttactgaaaacccttcctgcatttttcaaatattaagggaacacttggagaagatagtttctccttaaggttccaccttactataatatatagatgacagtc--ctttcctctgcttcacagatagcctatgaaaaaaatagtgtatatctattaaaacaactaactgctaaagatcatgaagtctctaacgaaaaattgcagctagtgaaaactcagaagaaatatttgggacatttaacttcaaaaaaTGAATTACATTTAGACCCAGATTGGCACTTTGTAATTTCTTCAGCCAAGAACCaagtatcacagaaaaacacagaatattataatgctgtatttgtggtgtgtaaactacccatgtcttaagtagaaaggctaaaaagtgaaccaatgaaaaataataactacaa-gacttttcaacacatac----acagtaca-----------------------------aggccaggcgcagtggctcatgcctgtaatcccaggactttgagaggctgaagtgaacagatcatttgaactcaagattttcagaccagcctgggcaacatagcaaaacccagtatctat---aaaaaatagaaaaaattagctggttatggtggcacatgcctgtggtaccagctgcttaggaggctgaggtgaaaggattgc-tgtgcatgggaggcagacgttagagtgagctgagattgtgacactgcactccaggctgggtgacagagtgagatccccatct--aaaaaaaa--agacatagacagtatgagaagatataaatagaaacaacaaaaagttaaaaagaaagaggatggagtcaaagtgtgaaatttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30857076 1094 + 171630274 GCCTTGTTATACGACATACTCATccttgtaatgtcccaatc-tacctattaaaaaaaaaaaacacctgtgggtggagttttgttcagaacttctgagcagtaaactacatagtcattctaaggcatccagtggttccaaatccccatattttattaaactcaatacttattgatagcaggttttccactgtcactaatctatgccaggcattctttagtaatccagtggatcag-------gattcctttttgcttttacctgggaaatccaaca--ttacccggacagtaatgccccatgctttca-tgaaagccttttctgagttttttgaatcttaagggaagacttggaggatatactttctccttaaggttccaccttactacaatatatagatgaacttcttctttgctctgcttcacagacagcctacaaaaaaggcactatatatctgataaagcaactggctgcaaaacaccat-acatctgtaaggaaaaactgcagccagtaaaaactcaggggaagtatttgggacatttaaCTTCATAAAATCAATTGCATTTAGACCCAGACTGCTGTTTTGCAATTCCTTCACCCAAGAACCAAATGCcacataaaagcacagaatattataatgttgtacttgtggtgtgtaaactacttacatattaactagaaagactaaaaaatgtaccaataaaa---aataactacaatggcctttcaagacacagtacaataatatatgaatagaaacaacaaaaagttaaaaagcaggccaggcacagtggctcacacccataatcccagcactttggaaggccgaggtggtcagatcacctgaggttaggagttcgagaccagcctgaccatcacagaaaaacctcatctctac-taaaaatat---aaaaattagctgggcgtggtggcgcgtgcctgtagtcccagctacttggtaggctgaggcaggagaatcacttgaaactgagcagcagaggttgcggtgagctgagatcatgtcactgcattccagcctgctcaacaagagcaaaactcaatct----caaaaa--a------------------------aaaaaaaaaccgc---------------agggggatgaagttaaagtgtgaaattt-
i calJac3.chr4             I 2797 T 47563
e mm10.chr17               58756926  415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e cebCap1.NW_016107755v1    1268632 27423 -   1771730 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            30016986 24139 -  71996105 T
e macNem1.NW_012012100v1     721517 24871 +   1495729 T
e macFas5.chr4             30466255 23683 - 170955103 T
e rheMac8.chr4             31174115 23669 + 172585720 T

a score=649864.000000
s hg38.chr6_GL000254v2_alt  1803044 384 +   4827813 tattacatatctttcggtttttgtttatacaagcagtgttaagtttttatcagattaaaataatggt--tataagatatctgcaagcagcctggtgatctcaaatcataaaaaatgcaacagatatacaaaaaataaacaacaggaaattaaatcatatcaccagagaatcaccttcactaaaaggaagacataaaggaaggaaagaaggaagagaaaacaagcaaaacaacgagaaaacaaataagaaaatgtccttctttatcaataataacactgaatgtaaatggtctaaactctccaatcaaaagaaatggagtggtggaatgaataaaaaaaaaaaaaaaaaaa-----------------------------------------------------------------ggacccaatgatctgttgcctacaagaaacacactc
s panTro5.chr6             30649170 449 + 175400573 tattacgtatctttcagtttttgtttatacaagcagtgttaagtttttatcaggttaaaataatggt--tataagatatctgcaagcagcctggtgatctcaaatcataaaaaatacaacagatatacaaaaaataaacaacaggaaattaaatcatatcaccagagaatcaccttcactaaaaggaagacataaaggaaggaaagaaggaagagaaaacatgcaaaacaacgagaaaacaaataagaaaatttccttctttatcaataataacactgaatgtaaatggtctaaactctccaatcaaaagatatggagtggtggaatgaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccaagggacccaatgatctgttgcctacaagaaacacactc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31073139 388 + 173848474 tattacgtatctttcagtttttgtttatacaagcagtgttaagtttttatcaggttaaaataatggt--tataagatatctgcaagcagcctggtgatctcaaatcataaaaaatacaacagctatacaaaaaataaacaacaggaaattaaatcatatcaccagagaatcaccttcactaaaaggaagacataaaggaaggaaagaaggaagagaaaacatgcaaaacaacgagaaaacaaataagaaaatttccttctttatcaataataacactgaatgtaaatggtctaaactctccaatcaaaagatatggattggtggaatgaattaaaaaaaaaaaaaaaaac-------------------------------------------------------------caagggacccaatgatctgttgcctacaagaaacacactc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     578499 408 +   2037526 tattacgtatctttcagtttttgtttatacaagcagtgttaagtttttatcaggttaaaataatggt--tataagatatctgcaagcagcctggtgatctcaaatcataaaaaatacaacagatatacaaaaaataaacaacaggaaattaaatcatatcaccagagaatcaccttcactaaaaggaagacataaaggaaggaaagaaggaagagaaaacaagcaaaacaacgagaaaacaaataagaaaatttctttctttatcaataataacactgaatgtaaatggtctaaactctccaatcaaaagatatggagtggtggaatgaataaaaataaaaaaaaataaa-----------------------------------------aaaaataaaaaaaaaaaaaccaagggacccaatgatctgttgcctacaagaaacacactc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75251076 375 + 122973662 tattacttacctttcagtttttgtttatacaatcagtgttaagtttttctcagattaaaataatggt--tataagatatctgcaagcagcctggtgatctcaaatcataaaaaatacagcagatatgc-aaaaacaaacaacaggtaattaaatcatatcaccagagaaccaccttcactaaaaggaagacataaaggaaggaaagaaggaagagaaaacaagcaaaacaaccagaaaacaaataagaaaatttccttctttatcaataataacactgaatgtaaatggtctaaactctccaatcaaaagatatggagtggtggaatgaataaaaaa-------------------------------------------------------------------------ccaaaggacccaaggatctgttgcctacaagaaacacactc
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     808112 372 -    863181 tattatgtatctttcagtttttgttcatatgatctgtgttaagtttttatcagactaaaataatggttatataagatatctgcaagcagcctggtgatctcaaatcataaaaaatacaacagatatataaaaaataaacaacaggaaattaa-----atcaccagagaatcaccttcactaaaaggaagacataaaggaaggaaagaaggaagagaaaacaagcaaaacaaccagaagacaaataagaaaatttccttctttgtcaataataacactgaatataaatggtctaaactctccaatcaaaagatatggagtggtggaatgaat-aaaaa-------------------------------------------------------------------------ccaaaacacctaatgatctgttgcctacaagaaacacactC
i cerAty1.NW_012002535v1   C 0 I 3591
s colAng1.NW_012115577v1     609636 378 -   1829203 tattatgtatgtttcagtttttgtttatatgatccatgttaagtttttatcagattaaaataatggttatataagatatctgcaagcagcctggtgatctcaaatcataaaaaatacaacagatatataaaaaataaacaacaggaaattaaatcatatcaccagagaatcaccttcactaaaaggaagacttaaaggaaggaaagaaggaagagaaaacaagcaaaacaaccagaaaacaaataagaaaatttccttctttgtcaataataacactgaatgtaaatggtctaaactctccaatcaaaagatatggagtggtggaatgaataaaaaa-------------------------------------------------------------------------ccaaaacacccaatgatctgttgcctacaagaaacacactc
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e cebCap1.NW_016107755v1    1268632 27423 -   1771730 T
e calJac3.chr4             30858170 47563 + 171630274 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            30016986 24139 -  71996105 T
e macNem1.NW_012012100v1     721517 24871 +   1495729 T
e macFas5.chr4             30466255 23683 - 170955103 T
e rheMac8.chr4             31174115 23669 + 172585720 T

a score=162055.000000
s hg38.chr6_GL000254v2_alt  1803428 128 +   4827813 acctataaacacacacatagactgaaaataaagggatggaaaaagattggtcatgccaatggaaatcaaaaaagtgcaggagtagctatacctatatcagacaaaatagattttaagataaaaactat
s panTro5.chr6             30649619 128 + 175400573 acctataaagacacacatagactgaaaataaagggatggaaaaagatctgccatgccaatggaaaccagaaaagagcaggagtagctatacctatatcagacaaaatagattttaagataaaaactat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31073527 128 + 173848474 acctataaagacacacatagactgaaaataaagggatggaaaaagatctgccatgccaatggaaaccagaaaagagcaggagtagctatacctatatcagacaaaatagattttaagataaaaactat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     578907 128 +   2037526 acctataaagacacacatagactgaaaataaaggaatggaaaaagatctgccatgccaatggaaaccagaaaagagcaggaatagctatacctatatcagacaaaatagattttaagataaaaactat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75251451 128 + 122973662 acctataaagacacacgtagactgaaaataaagggatggaagaagatctgccatgccaatggaaaccaaaaaagagcaagagtagttatacctatatcagacaaaatagattttaagacaaaaaagat
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115577v1     610014 128 -   1829203 acctataaagacacacatagactgaaaataaagggaggggaaaagatctgccataccgatggaaaccgaaaaagagcaagagtagctacacctatatcaaacaaaatagattttaagacaaaaactat
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e cebCap1.NW_016107755v1    1268632 27423 -   1771730 T
e calJac3.chr4             30858170 47563 + 171630274 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            30016986 24139 -  71996105 T
e cerAty1.NW_012002535v1     808484 3591 -    863181 I
e macNem1.NW_012012100v1     721517 24871 +   1495729 T
e macFas5.chr4             30466255 23683 - 170955103 T
e rheMac8.chr4             31174115 23669 + 172585720 T

a score=1244320.000000
s hg38.chr6_GL000254v2_alt  1803556 678 +   4827813 aagaagagacaaagagggtcactatataatgataaaggggtcaattcagtaagatgctataacaactataaatatacataccccaacactggagcacccagctgtataaagcaattattattagagctaaagagaaagatagatctcagtacaatcatagccagagacttcagcagcccccgtttcagcataggacagatcgtttagacagaaaagcaccaaagaaacattggacttgatctgcactatacattaaatggatctaatagatatttacagcatatttcatccaagagctgcagaatacacatatttcttctcaggacatggatcattctcaaagacaggccaaatatttggtcacaaaacaagtcttagaacattcaaaaaattgaaataatatcaaacatcttctctgacaacaatggaatagaactggaaattaataacaagaggaattttggaaactatacaaacacatagaaattaaacaatatgctcctgaatgcctggtgggtcaatgaagacattaggaaagaaatttaaaaattttttAGGgagaggggtggagcaagatggctagatagaagacttcactaaccgtccccctgcaacaaagataccaatctaacaactatctaca-tt-taaaaaaagacaaaatcaccttcactagaaaca
s panTro5.chr6             30649747 679 + 175400573 aagaagagacaaagaaggtcactatataatgataaaggggtcaattcagtaagatgctataacaactataaatatacataccccaacactggagcacccagctgtataaagcaattattattagagctaaagagagagatagatctcagtacaatcatagccagagacttcagcagcccccgtttcagcataggacagatcgtttagacagaaaagcaacaaagaaacattggacttgatctgcactgtacattaaatggatctaatagatatttacagcatatttcatccaagagctgcagaatacacatatttcttctcaggacatggatcattctcaaagacaggccaaatatttggtcacaaaacaagtcttagaacattcaaaaaattgaaataatatcaagcatcttctctgacaacaatggaataaaactggaaattaataacaagaggaattttggaaactgtacaaacacatagaaattaaacaatatgctcctgaatgcctggtgggtcaatgaagacattaggaaagaaatttaaaaattttttAGGgagaggggtggagcaagatggctagatagaagacttcactaaccgtccccatgcaacaaagataccaatctaacaactatctacattt-taaaaaaagacaaaatcaccttcactagaaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31073655 679 + 173848474 aagaagagacaaagaaggtcactatataatgataaaggggtcaattcagtaagatgctataacaactataaatatacataccccaacactggagcacccagctgtataaagcaattattattagagctaaagagagagatagatctcagtacaatcatagccagagacttcagcagcccccgtttcagcataggacagatcgtttagacagaaaagcaacaaagaaacattggacttgatctgcactgtacattaaatggatctaatagatatttacagcatatttcatccaagagctgcagaatacacatatttcttctcaggacatggatcattctcaaagacaggccaaatatttggtcacaaaacaagtcttagaacattcaaaaaattgaaataatatcaagcatcttctctgacaacaatggaataaaactggaaattaataacaagaggaattttggaaactatacaaacacatagaaattaaacaatatgctcctgaatgcctggtgggtcaatgaagacattaggaaagaaatttaaaaattttttAGGgagaggggtggagcaagatggctagatagaagacttcactaaccgtccccatgcaacaaagataccaatctaacaactatctacattt-taaaaaaagacaaaatcaccttcactagaaaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     579035 680 +   2037526 aagaagagacaaagaaggtcactatataatgataaaggggtcaattcagtaagatgctataacaactataaatatacataccccaacactggagcacccagctgtataaagcaattattattagggctaaagagagagatagatctcagtacaatcatagccagagacttcagcagcccccgtttcagcataggacagatcgtttagacagaaaagcaacaaagaaacattggacttgatctgcactgtacattaaatggatctaatagatatttacagcatatttcatccaagagctgcagaatacacatatttcttctcaggacatggatcattctcaaagacaggccaaatatttggtcacaaaacaagtcttagaacattcaaaaaattgaaataatatcaagcatcttctctgacaacaatggaataaaactggaaattaataacaagaggaattttggaaactatacaaacacatagaaattaaacaatatgctcctgaatgcctggtgggtcaatgaagacattaggaaagaaatttaaaaattttttAGGgagaggggtggaggaggacggctagatagaagacttcactaaccgtccccctgcaacaaagataccaatctaacaactatctacatttaaaaaaaaagacaaaatcaccttcactagaaaca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75251579 678 + 122973662 aagaagagacaaagaaggtcactatataatgataaaggggtcaactcggtaagacgctataacaactataaatatacataccccaacactggagcacccagctgtataaagcaattattattagagctaaagagagagatagatctcagttcaatcacagctggagacttcagcagcccccctttcagcataggacagattgtttagacagaaaatcaacaaagaaacattggatttaatctgcactatacattaaatggacctaatagatatttacagcgtatttcatccaagagctgcagaatacacatatttcttctcagcacatggatcattctcaaagacaggccaaatgtttggtcacaaaacaagtcttagaacattcaaaaaattgaaatagtatcaagcatcttctctgacaacaatggaataaaactggaaattaattacaagaggaattttggaaactatacaaacacatagaaattaaacaatatgctcctgaatgcctggtgtgtcaatgaagacattaggaaagaaatttaaaaattttttAGGgagaggggtggagcaagatggctagatagagtacttcaccaaccgtccccctgcaacaaagataccaatctaacaactatctaca-tt-ttaaaaaagacaaaatcaccttcactagaaaca
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002535v1     812075 677 -    863181 aagaagagacaaagaaggtcactatataatgataaagaggtcaattcggtaagacactataacaactataaatatacacaccccaacactggagcacccagctgtataaagcaattattattagagctaaggagagagatagatctcagtacaatcatagttggagacttcagcagcccccctttcagcataggacagattgtgtagacagaaaatcaacaaagaaacattggacttaatctgcactatacattaaatggacctaatagatatttacagtatatttcatccaagagctgcagaatacacatatttcttctcagtatatggatcattctcaaagacaggccaaatgtttggtcacaaaagaagtcttagaacattcaaaaaattgaaataatatcaagcatcttctttgacaacaatggaataaaactggaaattaataattagaggaattttggaaactatacaaacacatggaaattaaacaatatgcttctgaatgcctggtgggtcaatgaagacattaggaaagaaatttaaaatttttttagggag-ggggtggagcaagatggctagatagaagacttcaccaaccgttcccctgcaacaaagataccaatctaacaactatctaca-ct-taaaaaaagataaaatcaccttcactaggaata
i cerAty1.NW_012002535v1   I 3591 C 0
s colAng1.NW_012115577v1     610142 677 -   1829203 aagaagagacaaagaaggtcactatataatgataaagaggtcaattcggtgagacactataacaactataaatatacacaccccaacactggagcacccagctgtataaagcaattattattaaagctaaggagagagagagatctcagtacaatcatagttggagacttcagcagcccccctttcagcataggacagattgtgtagacagaaaatcaacaaagaaacattggacttaatctgcactatacattaaatggacctaatagatatttacagtatatttcatccaagagctgcagaatacacatatttcttctcagcatatggatcattctcaaagacaggccaaatgtttggtcacaaaagaagtcttagaacattcaaaaaattgaaataatatcaagcatcttctctgacaacaatggaataaaactggaagttaataactagaggaattttggaaactatacaaacacatggaaattaaacaatatgcttctgaatgcctggtgggtcaatgaagacattaggaaagaattttaaaatttttttagggag-ggggtggagaaagaaggctagaaagaagacttcaccaaccgtccccctgcaacaaagataccaatctaacaactatctacc-ct-tacaaaaagataaaatcaccttcactaggaaca
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e cebCap1.NW_016107755v1    1268632 27423 -   1771730 T
e calJac3.chr4             30858170 47563 + 171630274 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            30016986 24139 -  71996105 T
e macNem1.NW_012012100v1     721517 24871 +   1495729 T
e macFas5.chr4             30466255 23683 - 170955103 T
e rheMac8.chr4             31174115 23669 + 172585720 T

a score=121237.000000
s hg38.chr6_GL000254v2_alt  1804234 44 +   4827813 aaagttatgtgagcattcacaaaacctggttttt----aacttcatat
s panTro5.chr6             30650426 44 + 175400573 aatgttatgtgagcactcacaaaacctggttttt----aacttcatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31074334 44 + 173848474 aatgttatgtgagcactcacaaaacctggttttt----aacttcatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     579715 44 +   2037526 aaagttatgtgagcactcacaaaacctggttttt----aacttcatat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75252257 44 + 122973662 aaagttatgtgagcactcacaaaacctggttttt----aacttcatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31150446 34 + 172585720 aaagttatgtgagcactcacaatacctggttttt--------------
i rheMac8.chr4             T 23669 C 0
s macFas5.chr4             30442572 34 - 170955103 aaagttatgtgagcactcacaatacctggttttt--------------
i macFas5.chr4             T 23683 C 0
s macNem1.NW_012012100v1     696646 34 +   1495729 aaagttatgtgagcactcacaatacctggttttt--------------
i macNem1.NW_012012100v1   T 24871 C 0
s cerAty1.NW_012002535v1     812752 34 -    863181 aaagttatgtgagcactcacaatacctggttttt--------------
i cerAty1.NW_012002535v1   C 0 C 0
s colAng1.NW_012115577v1     610819 38 -   1829203 aaagttatgtgagcactcacaatacctggtttttaact----------
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e cebCap1.NW_016107755v1    1268632 27423 -   1771730 T
e calJac3.chr4             30858170 47563 + 171630274 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            30016986 24139 -  71996105 T

a score=786575.000000
s hg38.chr6_GL000254v2_alt  1804278 165 +   4827813 aactgaaagaaacactgagaagggtaggatgttgtcccgaattgccaatgccgccccagccccatcctccagcagcagccctgcagtgtggagaatcatgcac-ttgggagagggagaacacagcgattgtgacacattgcgttgaactcagtggtgccctgatat
s panTro5.chr6             30650470 165 + 175400573 aactgaaagaaacactgaaaagagtaggatattgtcccgaattgccaatgccgccccggccccatcctccagcagcagccctgcagtgcggagaatcatgcac-ttgggagagggagaacacagcaattgtgacacattgcgttgaactcagtggtgccctgatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31074378 165 + 173848474 aactgaaagaaacactgaaaagagtaggatattgtcccgaattgccaatgccgccccggccccatcctccagcagcagccctgcagtgcggagaatcatgcac-ttgggagagggagaacacagcaattgtgacacattgcgttgaactcagtggtgccctgatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     579759 164 +   2037526 aactgaaagaaacactgaaaagagtaggatattgtcccgaattgccaatgccgccccggccccatcctccagcagcagccctgcagtgtggagaatcatgcac-ttgggagagggagaacacagcaattgtgacacattgcg-tgaactcagtggtgccctgatat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75252301 165 + 122973662 aactaaaagaaacactgaaaagggtaggatattgtcccgaattgccaatgccgccccggacccatcctccagcagcagccctgcagtgtggagaatcatgcac-ttgggagagggagaacacagcaattgtgacacattgcattgaactcagtggtgccgtgatat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31150480 166 + 172585720 aactgaaagaaacactgaaaagggcaagatattgtctcaaattgccaatgccaccccagccccatcctccagcagcagctctgcagtgcggagaatcatgcactttgggagagggagaacacagaaattgtgagacattgcgttgaactcagtggtgccttgatat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30442606 166 - 170955103 aactgaaagaaacactgaaaagggcaagatattgtctcaaattgccaatgccaccccagccccatcctccagcagcagctctgcagtgcggagaatcatgcactttgggagagggagaacacagaaattgtgagacattgcgttgaactcagtggtgccttgatat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     696680 166 +   1495729 aactgaaagaaacactgaaaagggcaagatattgtctcaaattgccaatgccaccccagccccatcctccagcagcagctctgcagtgcggagaatcatgcactttgggagagggagaacacagaaattgtgagacattgcgttgaactcagtggtgccttgatat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     812786 165 -    863181 aactgaaagaaacactgaaaagggcaggatattgtctcagattgccaatgccgccccagccccatcctccagcagcagccctgcagtgcggagaatcatgcac-ttgggagagggagaacacagaaattgtgagacattgcgttgaactcagtggtgccctgatat
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29992847 165 -  71996105 aactgaaagaaacactgaaaagggcaagatattgtctcaaattgccaatgccgccccagccccatcctccagcagcagctctgcagtgcggagaatcatgcac-ttgggagagggagaacacagaaattgtgagacattgcgttgaactcagtggtgccttgatat
i chlSab2.chr17            T 24139 C 0
s colAng1.NW_012115577v1     610857 161 -   1829203 ----gaaagaaacactgaaaagggcaggatattgtctcaaattgccaatgccgccccagccccatcctccagcagcagccctgcagtgcagagaatcatgcac-ttgggagagggagaacacagaaattgtgagacattgcgttgaactcagtggtgccctgatat
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e cebCap1.NW_016107755v1    1268632 27423 -   1771730 T
e calJac3.chr4             30858170 47563 + 171630274 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=204236.000000
s hg38.chr6_GL000254v2_alt  1804443 32 +   4827813 agAGTTATATTGGAAGAATGGAGCAATGAGTT
s panTro5.chr6             30650635 32 + 175400573 agAGTTATATTGGAAGAATGGAGCAATAAGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31074543 32 + 173848474 agAATTATATTGGAAGAATGGAGCAATAAGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     579923 32 +   2037526 agAGTTATATTGGAAGAATGAAGCAATGAGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75252466 32 + 122973662 agAGTTATATTGGAAGAATGGAACAATGGGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31150646 32 + 172585720 agAGTTATATTAGAAGAATGGAGCAATGGGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30442772 32 - 170955103 agAGTTATATTAGAAGAATGGAGCAATGGGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     696846 32 +   1495729 agAGTTATATTGGAAGAAGGTAGCAATGGGTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     812951 32 -    863181 agAGTTATATTGGAAGAATGGAGCAATGGGTT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29993012 32 -  71996105 agAGTTATATTGGAAGAATGGAGCAATGGGTT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     611018 32 -   1829203 agAGTTATATTGGAAGAATGGAGCAATAGGTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30810607 32 + 171630274 AGAGTTATATGAAAAGAATGGAGCAATAGGTT
i calJac3.chr4             T 47563 C 0
s cebCap1.NW_016107755v1    1241209 32 -   1771730 AGAGTTATATGAAAAGAATGGAGCAATGGGTT
i cebCap1.NW_016107755v1   T 27423 C 0
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           611951 18984 +  18854210 T
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=1037787.000000
s hg38.chr6_GL000254v2_alt  1804475 168 +   4827813 TGGTGGTTGGGGTGGGGAAACAGGGAGGAAAGGAATGAAACAAACACTCGAGGGTAGAAGATGGTACCAGTCTGAGAATCAGGTGCCAGTTCTTTTCTACTGTGTGTCTAGTCACATTGGTGTAGACGTCCAGGCAGGAGGAGAAG--CAAGTTGTAGGATCAGCTACA---T
s panTro5.chr6             30650667 168 + 175400573 TGGTGGTTGGGGTGGGGAAACAGGGAGGAAAGGAATGAAACAAACACTCGAGGGTAGAAGATGGTACCAGTCTGAGAATCAGGTGCCAGTTCTTTTCTACTGTGTGTCTAGTCACATTGGTGTAGACGTCCAGGCAGGAGGAGAAG--CAAGTTGTGGGATCAGCTACA---T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31074575 168 + 173848474 TGGTGGTTGGGGTGGGGAAACAGGGAGGAAAGGAATGAAACAAACACTCGAGGGTAGAAGATGGTACCAGTCTGAGAATCAGGTGCCAGTTCTTTTCTACTGTGTGTCTAGTCACATTGGTGTAGACGTCCAGGCAGGAGGAGAAG--CAAGTTGTGGGATCAGCTACA---T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     579955 168 +   2037526 TGGTGGTTGGGGTGGGGAAACAGGGAGGAAAGGAATGAAACAAACACTCGAGGGTAGAAGATGGTACCAGTCTGAGAATCAGGTGCCAGTTCTTTTCTACTGTGTGTCTAGTCACATTGGTATAGACGTCCAGGCAGGAGGAGAAG--CAAGTTGTGGGATCAGCTACA---T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75252498 168 + 122973662 TCGTGGTTGGGGTGGGGAAACAGGGAGGAAAGGAATGAAAAAAACACTCGAGGGCAGAAGATGGTACCAGTATGAGAATCAGGTGCCAGTTCCATTCTACTGTGTGTCTAGTCACATTGGTGTAGACGTCCAGGCAGGAGGAGAAG--CAAGCTGTGGGATCAGCTACA---T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31150678 167 + 172585720 TGGTTGTTGGTGTGGGGAAACGGGGAGGAAAGGAATGAAAAAAATAATCGGGGGTAGATGATGATACCAGTCTGAGAATCAGGTGCCGGTTCCATTCTACTGTGCATCTAGTCACAGTGGCGTAGACGTCCAGGCAGGAGAAGGAG--CAAGGTGTGGGATCAGCTACA----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30442804 167 - 170955103 TGGTTGTTGGTGTGGGGAAACGGGGAGGAAAGGAATGAAAAAAATAATCGGGGGTAGATGATGATACCAGTCTGAGAATCAGGTGCCGGTTCCATTCTACTGTGCATCTAGTCACAGTGGCGTAGACATCCAGGCAGGAGGAGGAG--CAAGGTGTGGGATCAGCTACA----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     696878 167 +   1495729 TGGTTGTTGGTGTGGGGAAACAGGGAGGAAAGGAATGAAAAAAATAATCGGGGGTAGATGATGATACCAGTCTGAGAATCAGGTGCCGGTTCCATTCTACTGTGCATCTAGTCACAGTGGCGTAGACGTCCAGGCAGGAGGAGGAG--CAAGGTGTGGGATCAGCTACA----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     812983 165 -    863181 TG---GTTGGTGTGGGGAAACAGGGAGGAAAGGAATGAAAAAAATAATTGGGGGTAGATGATGGTACCAGTCTGAGAATCAGGTGCCAGTTCCATTCTACTATGCATCTAGTCACATTGGCGTAGACGTCCAGGCAGGAGGAGGAG--CAAGGTGTGGGATCAGCTACAT---
i cerAty1.NW_012002535v1   C 0 I 1386
s chlSab2.chr17            29993044 168 -  71996105 TGGTTGTTGGTGTCGGGAAACGGGGAGGAAAGGAATGAAAAAAATAATCGGGGGTAGATGATGATACCAGTCTGAGAATCAGGTGCCAGTTCCATTCTACTGTGCATCTAGTCACATTGGCGTAGACGTCCAGGCAGGAGGAGGAG--CAAGGTGTGGGATCAGCTACA-T--
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     611050 168 -   1829203 TGGTTGTTGGTATGGGGAAACAGGGAGGAAAGGAATGAAAAAAATAATCCGGGGTAGATGATGGTAACAGTCTGAGAATCAGGTGCCAGTTCCATTCTACTGTGCATCTAGTCACATTGGCGTAGACGTCCAGGCCGGAGGAGGAG--CAAGGTGTGGGATCAGCTACA--T-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30810639 158 + 171630274 TCGTGGTTGGGGTTGGGAAACAGGTAGGAAGGGAATGAATGAAAAACTGCAGAG----------TGCCAGTCTGAGAATCAGGTGCCAGTTCCACTCTACTGTGTGTCTAGTCACATTGGTGTAGATGTCCAGGCAGGAGAAGGGG--CAACCTGTGGGATCAGCCACA---T
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1241241 158 -   1771730 TGGCGGTTGGGGTGGGGAAACAGGGAGAAAGGAAATGAAAAAAACCCTGGAGGG----------TGCCAGTCTGAGAATCAGGTGCCCGTTCCATTCTACTGTGTGTCTAGTCACATAGGTACTGATGTCCAGGCAGGAGAAGCGG--CGAGCTGTGGGATCAGCCACA---T
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           592967 168 +  18854210 TAGTGGCTGGGATGAGAAGACAGGAAGGAAGAGGATGACAAACAT-CTAGGAGGTGAGGGATCACTTCAGTCTAAGAATCAGGTGACAGTTCTATTTCATTAGGTTTCTAAGCACACTGTC-TGGGTGTGGGAGCAGGTGGAGGAGTCCCAGCTGTGAGACCAGCCACA---T
i otoGar3.GL873550         T 18984 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=3485.000000
s hg38.chr6_GL000254v2_alt  1804643 2 +   4827813 CT
s panTro5.chr6             30650835 2 + 175400573 CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31074743 2 + 173848474 CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     580123 2 +   2037526 CT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75252666 2 + 122973662 GT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31150845 1 + 172585720 -T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30442971 1 - 170955103 -T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     697045 1 +   1495729 -T
i macNem1.NW_012012100v1   C 0 C 0
s calJac3.chr4             30810797 2 + 171630274 GT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1241399 2 -   1771730 GT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           593135 2 +  18854210 GT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e colAng1.NW_012115577v1     611218 0 -   1829203 C
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            29993212 0 -  71996105 C
e cerAty1.NW_012002535v1     813148 1386 -    863181 I

a score=2914221.000000
s hg38.chr6_GL000254v2_alt  1804645 427 +   4827813 GGGCTTCCAAAGGTAATCTCAGGTGCCACCTCTCCTCCATACTTACTAGGAATCCCAGGCCCTTCCCTGCAGTGACA-CCATCCTGCATCCTTT--GTACCCTGCTTTCCACTTCTTCTCACAGCCTT--------TCCCTCCCTCCCTCCTTCATTCTCCTGGCCAGGACCCACACTCACCCCACCTAAC--CTCTCTCTTTTGATCAGTCCCATAGTTTAGAAAAGAACAGAAATGCCAGCTGTGGTCAGGTGTTTTAAAAATTTATTCAGTGCTCTCTGGGCATGCATTTCAGGACAataacattgtttctggtctcaatgcact--ttcac----cacatctgattttcaactatgtgagttaggacacctatatggtcaatcaatcaaccagggaaagaaactaaggtccagagccctaaggatgcttgcccaaa--tcaccc
s panTro5.chr6             30650837 432 + 175400573 GGGCTTCCAAAGATAATCTCAGGTGCCACCTCTCCTCCATACTTACTAGGAATCCCAGGCCCTTCCCTGAAGTGACA-CCATCCTGCATCCTTT--GTACCCCTCTTTCCA---CTTCTCACAGCCTTtccctccctccctccctccctccttcATTCTCCTGGCCAAGACCCACACTCACCCCACCTCAC--CTCTCTCTTTTGATCAGTCCCATAGTTTAGAAAAGAACAGAAATGCCAGCTGTGGTCAGGTGTTTTAAAAATTTATTCAGTGCTCTCTGGGCATGCATTTCAGGACAATAACATTGTTTCTGGTCTCAATGCACT--TTCAC----CACATCTGATTTTCAACTATGTGAGTTAGGACACCTATATGGTCAATCAATCAACCAGGGATAGAAACTAAGGTCCAGAGCCCTAAGGATGCTTGCCCAAA--TCACCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31074745 428 + 173848474 GGGCTTCCAAAGATAATCTCAGGTGCCACCTCTCCTCCATACTTACTAGGAATCCCAGGCCCTTCCCTGAAGTGACA-CCATCCTGCATCCTTT--GTACCCCTCTTTCCA---CTTCTCACAGCCTT----tccctccctccctccctccttcATTCTCCTGGCCAAGACCCACACTCACCCCACCTCAC--CTCTCTCTTTTGATCAGTCCCATAGTTTAGAAAAGAACAGAAATGCCAGCTGTGGTCAGGTGTTTTAAAAATTTATTCAGTGCTCTCTGGGCATGCATTTCAGGACAATAACATTGTTTCTGGTCTCAATGCACT--TTCAC----TACATCTGATTTTCAACTATGTGAGTTAGGACACCTATATGGTCAATCAATCAACCAGGGATAGAAACTAAAGTCCAGAGCCCTAAGGATGCTGGCCCAAA--TCACCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     580125 430 +   2037526 GGGCTTCCAAAGGTAATCTCAGGTGCCACCTCTCCTCCATACTTACTAGGAATCCCAGGCCCTTCCCTGAAGTGACA-CCATCCTGCATCCTTT--GTACCC-TCTTTCCACTTCTTCTCACAGCCTT----tccctccctccctccctccttcattctcctggccaggacccacactcaccccacctcac--ctcTCTCTTTTGATCAGTCCCATAGTTTAGAAAAGAACAGAAATGCCAGCTGTGGTCAGGTGTTTTAAAAATTTATTCAGTGCTCTCTGGGCATGCATTTCAGGACAataacattgtttctggtctcaatgcact--ttcac----cacatctgattttcaactatgtgagttaggacacctatatggtcaatcaatcaaccagggaaagaaactaaggtccagagccctaaggatgcttgcccaaa--tcacCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75252668 423 + 122973662 GGGCTTCCAAAGGTAATCCCAGGTGCCACCTCTCCTCCGTACTTACTAGGAATCCCAGGGCCTTCCCTGAAGTGACA-CCATCCTGCATCCTTT--GTACCCCTCTTTCCACTTCTTCCCACAGCCTT--------TCCCCGCCTCCCTCCTTCATTCTCCTCGGCAGGACCCACACTCACCCCACCTCAC--CTCTCTCTTTTGATCAGTCCCATAGTTTAGAAAGGAACAGAAATGCCAGCTGAGGTCAGGTGTTTTAAAAATTTATTCAGTGCTCTCTGGGCATGCATTTGAGGACAATAACATTTTTTCTGGTCTCAATGCACT--TTCAC----CACATCTGATTTTCAACTGTGTGAGTCAGGACACCTATATG----ATCAATCAACCAGGGAAAGAAACTAAGGTCCAGAGCCCTGAGGATGCTTGCCCAAA--TCACCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31150846 423 + 172585720 GGGCTTCCAAAGGTAATCCCAGGTGCCACCTCTCCTCCATACTTACTAGGAATCCCAGGCCCTTCCCTGAAGTGACA-TCCTCCTGCAACCTTT--GTACCCCTCTTTCCA---CTTCTCACAGCCTT--------TCCCT-CCTCCCTCCTTCATTCTCCTGGCCAGGACCCACACTCACCCCACCTCAC--CTCTCTCTTTTGATCAGTCCCATAGTTTAGAAAGGAACAGAAATGCCAGCTGAGGTCAGGTCTTTTAAAAATTTATTCAGTGTTCTCTGGGCATGCATTTGAAGATGATAACATTGTTTCTGGTCTCAGTGCACT--TTCAC----CACATCTGATTTTCAGCTATGTGAGTCAGGACATCTATATGATTAATGAATCAACCAGGGAAAGAAACTAAGGTCCAGAGCCCTGAGGATGCTTGTGCAAA--TCACCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30442972 423 - 170955103 GGGCTTCCAAAGGTAATCCCAGGTGCCACCTCTCCTCCATACTTACTAGGAATCCCAGGCCCTTCCCTGAAGTGACA-TCCTCCTGCAACCTTT--GTACCCCTCTTTCCA---CTTCTCACAGCCTT--------TCCCT-CCTCCCTCCTTCATTCTCCTGGCCAGGACCCACACTCACCCCACCTCAC--CTCTCTCTTTTGATCAGTCCCATAGTTTAGAAAGGAACAGAAATGCCAGCTGAGGTCAGGTCTTTTAAAAATTTATTCAGTGTTCTCTGGGCATGCATTTGAAGATGATAACATTGTTTCTGGTCTCAGTGCACT--TTCAC----CACATCTGATTTTCAGCTATGTGAGTCAGGACATCTATATGATCAATCAATCAACCAGGGAAAGAAACTAAGGTCCAGAGCCCTGAGGATGCTTGTGCAAA--TCACCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     697046 423 +   1495729 GGGCTTCCAAAGGTAATCCCAGGTGCCACCTCTCCTCCATACTTACTAGGAATCCCAGGCCCTTCCCTGAAGTGACA-TCCTCCTGCAACCTTT--GTACCCCTCTTTCCA---CTTCTCACAGCCTT--------TCCCT-CCTCCCTCCTTCATTCTCCTGGCCAGGACCCACACTCACCCCACCTCAC--CTCTCTCTTTTGATCAGTCCCATAGTTTAGAAAGGAACAGAAATGCCAGCTGAGGTCAGGTCTTTTAAAAATTTATTCAGTGTTCTCTGGGCATGCATTTGAAGATGATAACATTGTTTCTGGTCTCAGTGCACT--TTCAC----CACATCTGATTTTCAGCTATGTGAGTCAGGACATCTATATGATCAATCAATCAACCAGGGAAAGAAACTAAGGTCCAGAGCCCTGAGGATGCTTGTGCAAA--TCACCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     814534 423 -    863181 GGGCTTCCAAAGGTAATCCCAGGTGCCACCTCTCCTCCATACTTACTAGGAATCCCAGGCCCTTCCCTAAAGTGACA-CCATCCTGCAACCTTT--GTACCCCTCTTTCCA---CTTCTCACAGCCTT--------TCCCT-CCTCCCTCCTTCATTCTCCTGGCCAGGACCCACACTCACCCCACCTCAC--CTCTCTCTTTTGATCAGTCCCATAGTTTAGAAAGGAACAGAAATGCCAGCTGAGGTCAGGTCTTTTAAAAATTTATTCAGTGTTCTCTGGGCATGCATTTGAAGATGATAACATTGTTTCTGGTCTCAGTGCACT--TTCAC----CACATCTGATTTTCAGCTATGTGAGTCAGGACATCTATATGATCAATCAATCAACCAGGGAAAGAAACTAAGGTCCAGAGCCCTGAGGATGCTTGTGCAAA--TCACCC
i cerAty1.NW_012002535v1   I 1386 C 0
s chlSab2.chr17            29993212 426 -  71996105 GGGCTTCCAAAGGTAATCCCAGGTGCCACCTCTCCTCTATACTTACTAGGAATCCCAGGCCCTTCCCTGAAGTGACA-TCCTCCTGCAACCTTT--GTACCCCTCTTTCCACTTCTTCTCACAGCCTT--------TCCCT-CCTCCCTCCTTCATTCTCCTGGCCAGGACCCACACTCACCCCACCTCAC--CTCTCTCTTTTGATCAGTCCCATAGTTTAGAAAGGAACAGAAATGCCAGCTGAGGTCAGGTCTTTTAAAAATTTATTCAGTGTTCTCTGGGCACGCATTTGAGGATGATAACATTGTTTCTTGTCTCAGTGCACT--TTCAC----CACATCTGATTTTCAGCTATGTGAGTCAGGACATCTATATGATCAATCAATCAACCAGGGAAAGAAACTAAAGTCCAGAGCCCTGAGGATGCTTGTGCAAA--TCACCC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     611218 428 -   1829203 GGGCTTCCAAAGGTAATCCCAGGTGCCACCTCTCCTCCATACTTACTAGGAATCCCAGGCCCTTCCCTGAAGTGACA-TCCTCCTGCAACCTTT--GCACCCCTCTTTCCACTTCTTCTCACAGCCTT--------TCCCT-CCTCCCTCCTTCATTCTCCTGGCCAGGACCCACACTCACCCCACCTCACCTCTCTCTCTTTTGATCAGTCCCATAGTTTAGAAAGGAACAGAAATGCCAGCTGAGGTCAGGTCTTTTAAAAATTTATTCAGTGCTCTCTGAGCATGCATTTGAGGATGATAACATTGTTTCTGGTCTCAGTGCACT--TTCAC----CACATCTGATTTTCAGCTATGTGAGTCAGGACATCTATATGATCAATCAATCAACCTGGGAAAGAAATTAAGGTCCAGAGCCCTGAGGATGCTTGTGCAAA--TCACCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30810799 426 + 171630274 GGGCTTCCAAAGGTAATCCCAGATGCCACCTCTCCTCCATACTTATGAGGAATCTAGGGCTCTTCGCTAAACTGACACCCATCCTGCAATCTGT--GTAGCACTCCTTCCACTTCTTCTCATGGCCAT--------TCCCC-ACCCCCTCCTCCACTCTACTAGCCAGGACCCACACTCACCTCACCTCAC--CTCTCTCTTTTGATCAATCCCACAGTTCAGAAAGGAACAGAAATGCCAGCTGAGGTCAGGTGTTTTAAGAATTTATCCAGTGCTCTCTGGGCATGTACTTGAAGACAATAACATTGTTTCCTGTCTCAATGCACT--TTCCC----CACATCTGATTTTCAGGAATGTGAGGAAGGCCATCCATATGATCATGCCATCA-CCAGGCAAGGAAACTACGGCCCCGAGCCCTGAGGATGCCTGCCCAAA--TCACCC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1241401 431 -   1771730 GGGCTTCCAAAGCTAATCCCAGGTGCCACCTCTCCTCCATACTTACGAGGAATCTCAGGCTCTTCCCTGAAGTGACA-CCATCCTGCATCGTTT--GTAGCCCGCCTTCCACTTATTCTCATGGCCTT--------TCCCC-ACCCCCTCCTTCACTCTCCTGGCCAGGACCCATACTCACCCCATCTCAC--CTCTCTTTTTTGATCAGTCCCACAGTTCAGAAAGGAACAGAAATGCCAGCTGAGGTCAGGTGTTTTAAGAATTTATTCCCTGCTC-CTGGGCATGTATTTGAAGACAATAACATTGTTTCTGGTCTCAATGCACTGATTTTCAGTGCAcatctgattttcagctatgtgaggacggccatccatatgatcatcccatcacccaggcaaggaaactatggcccagagccctgaggatgcctgcccaaa--tcacCC
i cebCap1.NW_016107755v1   C 0 I 34
s otoGar3.GL873550           593137 408 +  18854210 GAGCTTCCAAAGGGAAGCCTAGGTACCACCTCTCCACCACACTTACTGGGAATC-CAGGTTCTCCCCTAGGCTGATA-CC--TCTGCCTCCCCCCATTCCCCCTCCCTCCCCTTCTTCCCACAGTCAT--------TCTCTGCCTCCCGCCTCCATTGTCCTGGCCAGGACCATCATGCACCCTGCCTCTC--CCCTCACTTTCAGTAAGTCTTACAGCTCAGAAAGGAACAGAAATACAGGTTGAGATCAGGTGTTTTAAAAATGTATTCAGTGCTTTCTGGGGGTGTATTGGAGGAGAACAACACTGTCCCTAATGTCAAAGCACA--TGCCC----AATACCTAATTTTAAGCTATGTGAGAAAAGccatc-------------------ctagtgaaggaaattgaggcccaaaacgttgagcatgcttacccaagattcagc-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=32706.000000
s hg38.chr6_GL000254v2_alt  1805072 9 +   4827813 -tgattttgg
s panTro5.chr6             30651269 9 + 175400573 -TGATTTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31075173 9 + 173848474 -TGATTTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     580555 9 +   2037526 -TGATTTGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75253091 9 + 122973662 -TGATTTGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31151269 9 + 172585720 -TGATTTGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30443395 9 - 170955103 -TGATTTGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     697469 9 +   1495729 -TGATTTGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     814957 9 -    863181 -TGATTTGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29993638 9 -  71996105 -TGATTTGGA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     611646 9 -   1829203 -TGATTTGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30811225 9 + 171630274 -TGCCCTTCA
i calJac3.chr4             C 0 I 11
s otoGar3.GL873550           593545 9 +  18854210 taAACTTCC-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e cebCap1.NW_016107755v1    1241832 34 -   1771730 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=2094392.000000
s hg38.chr6_GL000254v2_alt  1805081 332 +   4827813 cagaacaggatctTCCAAGGGCCTTAAGAGTCAGAGAAGACCGCAGCCCCTTGTGTTGTATTCTGCTGCATGCCGGGGAAACTGGATGGAAACGATTCAGATTCTTCCTGCATGAAAAGGACAACCTGTGTCCTTG---GGAATCCTCCAGTGGCCCCAGTTGTTCCTGCTGGGTGTGA---CATCGATGCCCGAATCCAACCCTGTAAAATAGGGTGAAATTCAGATATTGCAAGTCATGAAAAATT-TTCTCCTGATAGC----------AAAGTTGAAGGATA---ACAAAACTGAAGGAGGGAACATACCAAACAGAGGAGGAAGGAATATacaaaaaataacaacaa
s panTro5.chr6             30651278 332 + 175400573 CAGAACAGGATCTTCCAAGGGCCCTAAGAGTCAGAGAAGACCGCAGCCCCTTGTGTTGTATTCTGCTGCATGCCAGGGAAATTGGATGGAAACAATTCAGATTCTTCCTGCATGAAAAGGGCAACCTGTGTCCTTG---GGGATCCTCCAGTGGCCCCAGTTGTTCCTGCTGGGGGTGA---CCTCGATGCCCGAATCCAACCCTGTAAAATAGGGTGAAATTCAGATATTGCAAGGCATGAAAAATT-TTCTCCTGATAGC----------AAAGTTGAAGGATA---ACAAAACTGAAGGAGGGAACATACCAAAAAGAGGAGGAAGGAATATacaaaaaataacaacaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31075182 332 + 173848474 CAGAACAGGATCTTCCAAGGGCCCTAAGAGTCAGAGAAGACCGCAGCCCCTTGTGTTGTATTCTGCTGCATGCCAGGGAAATTGGATGGAAACGATTCAGATTCTTCCTGCATGAAAAGGGCAACCTGTGTCCTTG---GGGATCCTCCAGTGGCCCCAGTTGTTCCTGCTGGGGGTGA---CCTCGATGCCCGAATCCAACCCTGTAAAATAGGGTGAAATTCAGATATTGCAAGGCATGAAAAATT-TTCTCCTGATAGC----------AAAGTTGAAGGATA---ACAAAACTGAAGGAGGGAACATACCAAAAAGAGGAGGAAGGAATATacaaaaaataacaacaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     580564 332 +   2037526 CAGAACAGGATCTTCCAAGGGCCCTAAGAGTCAGAGAAGACCGCAGCCCCTTGTGTTGTATTCTGCTGCATGCCAGGGAAATTGGATGGAAACGATTCAGATTCTTCCTGCATGAAAAGGGCAACCTGTGTCCTTG---GGGATCCTCCAGTGGCCCCAGTTGTTCCTGCTGGGGGTGA---CGTCGATGCCCGAATCCAACCCTGTAAAATAGGGTGAAATTCAGATATTGCAAGGCATGAAAAATT-TTCTCCTGATAGC----------AAAGTTGAAGGATA---ACAAAACTGAAGGAGGGAACATACCAAAAAGAAGAGGAAGGAATATacaaaaaataacaacaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75253100 332 + 122973662 CAGAACAGGATCTTCCAAGGGCCCTAAGAGTCAGAGAAGACCGCAGCCCCTTGTGTTGTATTCTGCTGCATGCCAGGGAAACTGGATGGAAACGATTCAGATTCTTCCTGCATGAAAAGGGCAACCTGTGTCCTTG---GGGATCCTCCAGTGGCCCCAGTTGTTCCTGCTGGGGGTGA---CCTCGACGCCCGAATCCAACCCTGTAAAATAGGGTGAAATTCAGACATTGCAAGGCATGAAAAATT-TTCTCCTGATAGC----------AAAGTTGAAGGATA---ACAAAACTGAAGGAGGGAACATACCAAAAACAGGAGGAAGGaatatacaaaaaataacaataa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31151278 331 + 172585720 CAGAACAGGATCTTGTAAGGGTCCTAAGAGTCAGAGAAGACTGCAGCCCCTTGTGTTGTATTCTGCTGCATGCCGGGGAAACTGGATGGAAACGATTCAGATTCTTCCTGCATGAAAACAGCAAGTTGTGTCCTTG---GGGATCCTCCAGTGGCCCCAGTTGTTCCTGCTGGGGGTGA---CCTCGACTCTCGAATCCAGCCCTGTAAAATAGGGAGAAATTCAGACATTGCAAGGCATGAAAAATT-TTCTCCTGAGAGC----------AAAGTCGAAGGATA---ACAAAATTGAAGGAGGGAACATATC-AAAAGAAGAGGAAGGAATATacaaaaacaaaaaacaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30443404 331 - 170955103 CAGAACAGGATCTTGTAAGGGTCCTAAGAGTCAGAGAAGACTGCAGCCCCTTGTGTTGTATTCTGCTGCATGCCGGGGAAACTGGATGGAAACGATTCAGATTCTTCCTGCATGAAAACGGCAAGTTGTGTCCTTG---GGGATCCTCCAGTGGCCCCAGTTGTTCCTGCTGGGGGTGA---CCTCGACTCTCGAATCCAGCCCTGTAAAATAGGGAGAAATTCAGACATTGCAAGGCATGAAAAATT-TTCTCCTGAGAGC----------AAAGTCGAAGGATA---ACAAAATTGAAGGAGGGAACATATC-AAaagaagaggaaggaatatACaaaaacaaaaaacaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     697478 331 +   1495729 CAGAACAGGATCTTGTAAGGGTCCTAAGAGTCAGAGAAGACTGCAGCCCCTTGTGTTGTATTCTGCTGCATGCCGGGGAAACTGGATGGAAACAATTCAGATTCTTCCTGCATGAAAACGGCAAGTTGTGTCCTTG---GGGATCCTCCAGTGGCCCCAGTTGTTCCTGCTGGGGGTGA---CCTCGACTCTCGAATCCAGCCCTGTAAAATAGGGAGAAATTCAGACATTGCAAGGCATGAAAAATT-TTCTCCTGAGAGC----------AAAGTCAAAGGATA---ACAAAATTGAAGGAGGGAACATATC-AAAAGAAGAGGAAGGAATATacaaaaacaacaaacaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     814966 331 -    863181 CAGAACAGGATCTTGTAAGGGTCCTAAGAGTCAGAGAAGACTGCAGCCCCTTGTGTTGTATTCTGCTGCATGCCGGGGAAACTGGATGGAAACGATTCAGATTCTTCCTGCATGAAAACGGCAACTTGTGTCCTTG---GGGATCCTCCAGTGGCCCCAGTTGTTCCTGCTGGGGGTGA---CCTCGACTCTCGAATCCAGCCCTGTAAAATAGGGAGAAATTCAGACATTGCAAGGCATGAAAAATT-TTCTCCTGAGAGC----------AAAGTCGAAGGATA---ACAAAATTGAAGGAGGGAACATATC-AAAAGAAGAGGAAGGAATATACAAAAACAAAAAACAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29993647 325 -  71996105 CAGAACAGGATCTTGTAAGGGTCCTAAGAGTCAGAGAAGACTGCAGCCCCTTGTGTTGTATTCTGCTGCATGCCGGGGAAACTGGATGGAAACGATTCAGTTTCTTCCTGCATGAAAACGGCAACTTGTGTCCTTG---GGGATCCTCCAGTGGCCCCAGTTGTTTCTGCTGGGGGTGA---CCTCGACTCTCGAATCCAGCCCTGTAAAATAGGGAGAAATTCAGACATTGCAAGGCATGAAAAATT-TTCTCCTGAGAGC----------AAAGTCGAAGGATA---ACAAAATTGAAGGAGGGAACATATCaaaaagaggaagaaggaatatacaa-------aaacaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     611655 325 -   1829203 CAGAACAGGATCTTGTAAGGGTCCTAAGAGTCAGAGAAGACTGCAGCCCCTTGTGTTGTATTCTGCTGCATGCCGGGAAAACTGGATGGAAACGATTCGGATTCTTCCTGCATGAAAAGGGCAAGCTGTGTCCTTG---GGGATCCTCCAGTGGCCCCAGTTGTTCCTGCTGGGGGTGA---CCTCAACTCTCCAATCCAGCCCTGTAAAATAGGGAGAAATTCAGACGTTGCAAGGCATGAAAAATT-TTCTCCTGAGAGC----------AAAGTCGAAGGATA---ACAAAATTGAAGGAGGGAACATATCAAAAAGAGGAGGAAAGAATATacaa-------aaacaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30811245 321 + 171630274 CAGAACAGGATCTTGCAAGGGCCCTATGAATCAGAGA-------AGCCCCTCGTGTTGTATTCTGCTGCCTGCTGGGGAAACTGAGTGGCAATGATTCAGGCTCTTCCTGCAACAGAAGGGCCACCTGCGTGTTTG---GGGGTCCTCCAGTGGCCACGGTTGTTCCTGCTGAGACTGA---CCTCGACTCCCGAATCCAACCCTGTAAAATAGAAAGAAATTCAGATATTGCAAGGCCTG---AGTT-TTCTCCCACTATC----------AAAGTTAAGGGATGTACTCAAA----GAAAATGGAACATACCAAGCAGAGGAGGAAGGAATACACcaaagacaaaaacaa
i calJac3.chr4             I 11 C 0
s cebCap1.NW_016107755v1    1241866 331 -   1771730 CAGAGCAGGATCTTGCAAGGGCCCTAAGAATCAGAGAACACCGCAGCCCCTCGTGTTGTATTCTGATGGCTGCTGGGGAAACTGGGTGGGAATGATTCAGACTTTTCCTGCATCAGAAGGGCCACCTGTGTCCTTG---GGGGTCCTCCAGTGGCTGCAGTTGTTCCTGCTGAGGGTGA---CCTCGACTCCCAAATCCAACCCTGTAAAATAGAAAGAAGTTCAGATATTGCGAGGCCTGAAAAGTT-TTCTCCCAATACC----------AAAGTTGAGGGATGTATTCAAA----GAAAAGGGAATATACCAAGCAGAGGAGGAAGGAATACACcaaacacaaaaacaa
i cebCap1.NW_016107755v1   I 34 I 13
s otoGar3.GL873550           593554 288 +  18854210 TGGAACAAGGGGTTGC---------------CAGATACAACCCCAGCTCC---TGTTATATGCAACTGCCTGCT-GGGAAACTGGATGTGAATGATTCAAACTCTTCCTGCCTCA-CAGGGCCACTCATGCCCCTGGGTGGGATCCTTCTGTGGCTCCCACTGTTCCTTCCATGTCTGACTTCCTCCATTCTCAAATCCATCTCTATAAATCAGGAAGAAAATCACACCTTACAGGGCATGAACGTTTATTAAcctatgagctctttttcaaaaagttaaagaata------------------------ttctccagagatgagggaataa--------------------
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=44304.000000
s hg38.chr6_GL000254v2_alt  1805413 17 +   4827813 caa--caacatcaaccaac
s panTro5.chr6             30651610 17 + 175400573 caa--caacatcaaccaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31075514 17 + 173848474 caa--caacatcaaccaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     580896 17 +   2037526 caa--caacatcaaccaac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75253432 17 + 122973662 caa--caacatcaacgaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31151609 19 + 172585720 aaaaccagcaataaccaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30443735 19 - 170955103 aaaaccagcaataaccaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     697809 19 +   1495729 aaaactagcaataaccaac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     815297 19 -    863181 AAAACCAGcaacaaccaac
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29993972 19 -  71996105 aaaaccagcaacaaccaac
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     611980 19 -   1829203 aaaaacagcaacaaccaac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30811566  3 + 171630274 -------aca---------
i calJac3.chr4             C 0 I 11
e mm10.chr17               58756926 415 -  94987271 T
e otoGar3.GL873550           593842  0 +  18854210 C
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e cebCap1.NW_016107755v1    1242197 13 -   1771730 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=5444902.000000
s hg38.chr6_GL000254v2_alt  1805430 786 +   4827813 aacaagaaca------aaa--aaa--ataccaaGATATGGGATGTATGAAATC-AGGCATCAACCCATGAAAAGGTGAAAGGgc---------------------------aacagga-------ccagaaaggaagagggtcacctgggtgggtg---gacagcagaggggaagccatctccaagaagatgaccttgacaacagccaacataagtttaaaggtatggagaagacatttactcaactaagggacagttggtgaattcat---ttaaggt------tcacggaaagtaagaaaatgaaaatactaggcaatgatcaaatct-tgaaaacttcagcatgtgtggaaagaaaaactaagagagtttaccatgtggctcaggtctgagtagcattcacgt-aagtcagtaattttaactctggctctcaatgcactcaaaatctccacctgcctacacgaggaggatgaaaatgtgtgtgctggggaaggtACTATGGACAGAAGGGatattgaaaagtcaatacataatatctaaaatggaaacatttgaagtggcataaatgtatattatcaagagacataaagataaagaacaaaatatgaagtaaaaggcttccatgtggttgcttgccaggaagctggtggctaggaaggattgagagagagtagaggggagaccatgttttgtAACAGGGGAAATGAAAGGGAAGCAGGTAGCACCTGGAGCCTGCCTCATGCAGAGAACAGGGTTCCACGCAGTGGTCCAGGATCTCAGGGAT--TTACTGTGGCTGAGGCCACCTGT-CCCCAGGACAAGCCCTTGGCACTGAGTCTACTGAAA
s panTro5.chr6             30651627 786 + 175400573 aacaagaaca------aaa--aaa--ataccaaGATATGGGATGTATGAAATC-AGGCATCAACCCATGAAAAGGTGAAAGGgc---------------------------aacagga-------ccagaaaggaagagggtcacctgggtgggtg---gacagcagaggggaagccatctccaagaagatgaccttgacaacagccaacatcagtttaaaggtattgagaagacatttactcaactaaggaacagttggtgaattcat---ttaaggt------tcatggaaagtaagaaaatgaaaataccaggcaattatcaaatct-tgaaaacttcagcatgtatggaaagaaaaactaagagagtttaacatgtggctcaggtctgagtagcagtcacat-aagtcagtaattttaactctggctctcaatgcactcaaaatctccacctgcctacacgaggaggatgaaaatgtgtgtgctggggaaggtACTGTGGACTGAAGGGATATTGAAAAGTCAATACATAATATCTAAAATGGAAACATTTGAAGTGGCATAAATGTATATTATCAAGAGACATAAAGATAAAGAACAAAATACGAAGTAAAAGGCTTCTATGTGGTTGTTTGCCAGGAAGCTGGTGGCTAGGAAGGATTGAGAGGGAGTAGAGGGGAGACCATGTTTTGGAACAGGGGAAATGAAAGGGAAGCAGGTAGCACCTGGAGCCTGCCTCATGCAGAGAACAGGGTTCCACGCAGTGGTCCAGGATCTCAGGGAC--TTACTGTGGCTGAGGCCACCTGC-CCCCAGGACAAGCCCTTGGCACTGAGTCTACTGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31075531 784 + 173848474 aacaagaaca------aaa--aaa----acCAAGATATGGGATGTATGAAATC-AGGCATCAACCCATGAAAAGGTGAAAGGgc---------------------------aacagga-------ccagaaaggaagagggtcacctgggtgggtg---gacagcagaggggaagccatctccaagaagatgaccttgacaacagccaacatcagtttaaaggtattgagaagacatttactcaactaaggaacagttggtgaattcat---ttaaggt------tcatggaaagtaagaaaatgaaaataccaggcaattatcaaatct-tgaaaacttcagcatgtatggaaagaaaaactaagagagtttaacatgtggctcaggtctgagtagcagtcacgt-aagtcagtaattttaagtctggctctcaatgcactcaaaatctccacctgcctacacgaggaggatgaaaatgtgtgtgctggggaaggtACTGTGGACTGAAGGGATATTGAAAAGTCAATACATAATATCTAAAATGGAAACATTTGAAGTGGCATAAATGTATATTATCAAGAGACATAAAGATAAAGAACAAAATACGAAGTAAAAGGCTTCTATGTGGTTGTTTGCCAGGAAGCTGGTGGCTAGGAAGGATTGAGAGGGAGTAGAGGGGAGACCATGTTTTGGAACAGGGGAAATGAAAGGGAAGCAGGTAGCACCTGGAGCCTGCCTCATGCAGAGAACAGGGTTCCACGCAGTGGTCCAGGATCTCAGGGAC--TTACTGTGGCTGAGGCCACCTGC-CCCCAGGACAAGCCCTTGGCACTGAGTCTACTGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     580913 789 +   2037526 aacaagaaca------aaa--aaa--ataccaaGATATGGGATGTATGAAATC-AGGCATCAACCCATGAAAAGGTGAAAGGGC---------------------------AACAGGA-------CCAGAAAGGAAGAGGGTCACCTGGGTGGGTggacgacagcagaggggaagccatctccaagaagatgaccttgacaacagccaacataagtttaaaggtattgagaagacatttactcaactaaggaacagttggtgaattcat---ttaagat------tcatggaaagtaagaaaatgaaaataccaggcaattatcaaatct-tgaaaacttcagcgtgtatggaaagaaaaactaagagagtttaacatgtggctcaggtctgagtagcagtcacat-aagtcagtaattttaactctggctctcaatgcactcaaaatctccacctgcctacatgaggaggatgaaaatgtgtgtgctggggaaggtACTATGGACTGAAGGGATATTGAAAAGTCAATACATAATATCTAAAATGGAAATATTTGAAGTGGCATAAATGTATATTATCAAGAGACATAAAGATAAAGAACAAAATACGAAGTAAAAGGCTTCTATGTGGTTGTTTGCCAGGAAGCTGGTGGCTAGGAAGGATTGAGAGGGAGTAGAGGGGAGACCATGTTTTGGAACAGGGGAAATGAAAGGGAAGCAGGTAGCACCTGGAGCCTGCCTCATGCAGAGAACAGGGTTCCACGCAGTGGTCCAGGATCTCAGGGAC--TTACTGTGACTGAGGCCACCTGC-CCCCAGGACAAGCCCTTGGCACTGAGTCTACTGAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75253449 779 + 122973662 aaaaagaaca------aaa--aaaaaataccaaGACACGGGATGTATGAAATC-AGGCATCAACCCATAAAAAGGTGAAAGGgc---------------------------aacagga-------ccagaaaggaagaaggtcacctgggtgggtg---gacagcagaggggaagccatctccaagaagatgaccttgacaacagccaccatgactttaaatgtattgagaagacatttactcaactaagggacagttggtgaattcatttattaaggt------tcatggaaagtaagaaaatgaaaataccaggcaattatcagatct-tgaaaacttccacatgtatagaaagaaaaactaagagagtttaacatgtggctcaggtctgagtagcattcacat-aagtcagtaattttaattctggctctcaatgcactcaaaatctccacctgcctacacgaggaggatgaaaatgtgtgtgctggggaaggtatTATGGACTGAAGGGATTTTGAAAAGTCAATACATAATATCTAAAATGGAAACATTTGAAGTGGCATAAATATATATTATCAAGAGACATA------------AAAATATGAACTAAAAGGCTTCCATGTGGTTGTTTGCCAGGAAGCTGGTGGCTAGGAAGGATTGAGAGAGAGTAGAGGGGAGACCATGTTTTGGAACAGGGGAAATGAAAGGGAAGCAGGTAGCACCTGGAGCCTGCCTCATGCAGAGAACAGGGTTCCACGCAGTGGTCCAGGATCTCAGGGAC--TTACTGTGGCTGAGGCCACCTGC-CCCCAGGACAAGGCCTTGGCACTGCGTCTACTGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31151628 794 + 172585720 aacaagaacaacaacaaaa--aaa--ataccaagacaTGGGATGTATGAAATC-AAACATCAACCCATGAAAAGGTGAAAGGgc---------------------------aacagga-------ccagaaaggaagagggtcacctgggttggtg---gacggcagaggggaagccatctccaagaagatgaccttgacaacagccaccataagtttaaacgtattgagaagacatttactcaactaagggacagttggtgaattcatttattaaggt------tcatggaaagtaagaaaatgagaataccaggcaattatcaaatct-tgaaaacttcaacatgtatggaaagaaaaactaagagagtttaacatgtggctcaggtctgagtagcattcacat-aagtcaataattttaactctggctctcagtgcattcaaaatctccacctgcctacacgaggaggatgaaaatgtctgtgctggggaaggtactatgga-cgaagggataTTGAAAAGTCAATACATAATATCTAAAATGGAAACATTTGAAGTGGCATAAATGTATATTATCAAAAGACATAGAGATAAAGAACAACATATGAACTAAAAGGCTTCTGTGTGGTTGTTTGCCAGGAAGCTGGTGGCTAGGAAGGATTGAGAGGGAGTAGAGGGGAGACCATGTTTTGGAACAGGGGAAATGAAAGGGAAGCAGGTAGCACCTTGACCCTGCCTCATGCGGAGAACAGGGTTCCACGCAGTGGTCCAGGATCTCAGGGGC--TTACTGTGGCTGATGCCACCTGC-CCCCGGGACAAGCCCCTGGCATTGAGTCTACTGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30443754 794 - 170955103 aacaagaacaacaacaaaa--aaa--ataccaaGACATGGGATGTATGAAATC-AAACATCAACCCATGAAAAGGTGAAAGGGC---------------------------AACAGGA-------CCAGAAAGGAAGAGGGTCACCTGGGTTGGTG---GACGGCAGAGgggaagccatctccaagaagatgaccttgacaacagccaccataagtttaaacgtattgagaagacatttactcaactaagggacagttggtgaattcatttattaaggt------tcatggaaagtaagaaaatgagaataccaggcaattatcaaatct-tgaaaacttcaacatgtatggaaagaaaaactaagagagtttaacatgtggctcaggtctgagtagcattcacat-aagtcaataattttaactctggctctcagtgcattcaaaatctccacctgcctacacgaggaggatgaaaatgtctgtgctggggaaggtactatgga-cgaagggatattgaaaagtcaatacataatatctaaaatggaaacatttgaagtggcataaatgtatattatcaaaagacataaagataaagaacaacatatgaactaaaaggcttctgtgtggttgtttgccaggaagctggtggctaggaaggattgagagggagtagaggggagACCATGTTTTGGAACAGGGGAAATGAAAGGGAAGCAGGTAGCACCTTGACCCTGCCTCATGCGGAGAACAGGGTTCCACGCAGTGGTCCAGGATCTCAGGGGC--TTACTGTGGCTGATGCCACCTGC-CCCCGGGACAAGCCCTTGGCATTGAGTCTACTGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     697828 794 +   1495729 aacaagaacaacaacaaca--aaa--ataccaagacaTGGGATGTATGAAATC-AAACATCAACCCATGAAAAGGTGAAAGGgc---------------------------aacagga-------ccagaaaggaagagggtcacctgggttggtg---gacggcagaggggaagccatctccaagaagatgaccttgacaacagccaccataagtttaaacgtattgagaagacatttactcaactaagggacagttggtgaattcatttattaaggt------tcatggaaagtaagaaaatgagaataccaggcaattatcaaatct-tgaaaacttcaacatgtatggaaagaaaaactaagagagtttaacatgtggctcaggtctgagtagcattcacat-aagtcaataattttaactctggctctcagtgcactcaaaatctccacctgcctacacgaggaggatgaaaatgtctgtgctggggaaggtactatgga-cgaagggataTTGAAAAGTCAATACATAATATCTAAAATGGAAACATTTGAAGTGGCATAAATGTATATTATCAAGAAACATAAAGATAAAGAACAACATATGAACTAAAAGGCTTCTGTGTGGTTGTTTGCCAGGAAGCTGGTGGCTAGGAAGGATTGAGAGGGAGTAGAGGGGAGACCATGTTTTGGAACAGGGGAAATGAAAGGGAAGCAGGTAGCACCTTGACCCTGCCTCATGCGGAGAACAGGGTTCCACACAGCGGTCCAGGATCTCAGGGGC--TTACTGTGGCTGATGCCACCTGC-CCCCGGGACAAGCCCTTGGCATTGAGTCTACTGAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     815316 796 -    863181 aacaagaacaacaacaacaacaaA--ATACCAAGACATGGGATGTATGAAATC-AAACATCAACCCATGAAAAGGTGAAAGGgc---------------------------aacagga-------ccagaaaggaagagggtcacctgggttggtg---gacggcagaagggaagccatctccaagaagatgaccttgacaacagccaccataagtttaaacgtattgagaagacatttactcaactaagggacagttggtgaattcatttattaaggt------tcatggaaagtcagaaaatgagaataccaggcaattatcaaatat-tgaaaacttcaacatgtatggaaagaaaaactaagagagtttaacatgtggctcaggtctgagtagcattcacat-aagtcaataattttaactctggctctcagtgcactcaaaatctccacctgcctacacgaggaggatgaaaatgtctgtgctggggaaggtACTATGGA-TGAAGGGATATTGAAAAGTCAATACATAATATCTAAAATGGAAACATTTGAAGTGGCATAAATGTATATTATCAAGAAACATAAAGATAAAGAACAACATATGAACGAAAAGGCTTCTGTGTGGTTGTTTGCCAGGAAGCTGGTGGCTAGGAAGGATTGAGAGGGAGTAGAGGGGAGACCATGTTTTGGAACAGGGGAAATGAAAGGGAAGTAGGTAGCACCTTGACCCTGCCTCATGCGGAGAACAGGGTTCCACGCAGTGGTCCAGGATCTCAGGGGC--TTACTGTGGCTGAGGCCACCTGC-CTCCAGGACAAGCCCTTGGCATTGAGTCTACTGAAA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29993991 793 -  71996105 aacaagaaca--aaaaaaa--aaa--ataccaaGACATGGGATGTATGAAATC-AAACATCAACCCATGAAAAGGTGAAAGGGC---------------------------AACAGGA-------CCAGAAAGGAAGAGGGTCACCTGGGTGGGTG---GAGAGCAGAGgggaagccatctccaagaagatgaccttgacaacaggtaccataagtttaaacgtattgagaagacatttactcaactaagggacggttggtgaactcatttattaaggt------tcatggaaagtaagaaaatgagaataccaggcaattatcaaatct-tgaaaacttcaacatgtatggaaagaaaaactaagagagtttaacatgtggctcaggtctgagtagcattcacat-aagtcaataattttaactctggctctcagtgcactcaaaatctccacctgcctacacgaggaggatgaaaatgtctgtgctggggaaggtactatggattgaagggatattgaaaagtcaatacataatatctaaaatggaaacatttgaagtggcataaatgtatattatcaagaaacataaagataaaGAACAACATATGAACGAAAAGGCTTCTGTGTGGTTGTTTGCCAGGAAGCTGGTGGCTAGGAAGGATTGAGAGGGAGTAGAGGGGAGACCATGTTTTGCAACAGCGGAAATGAAAGGGAAGCAGGTAGCACCTTGACCCTGCCTCATGCGGAGAACAGGGTTCCACGCAGCGGTCCAGGATCTCAGGGAC--TTACTGTGGCTGAGGCCACCTGC-CCCCAGGACAAGCCCTTGGCATTGAGTCTACTGAAA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     611999 796 -   1829203 aacaagaacaacaacaacaa-aaa--ATACCAAGACATGGGATGTATGAAAAC-AAGCATCAACCCATGAAAAGGTGAAAGGgc---------------------------aacagga-------ccagaaaggaagagggtcacctgggtgggtg---gacagcagaggggaagccatctccaagaagatgaccttgacaacagccaccataagtttaaacgtattgagaagacatttactcaactaagggacagctggtgaattcatttattaaggt------tggtggaaagtaagaaaatgagaataccaggcaattatcaaatct-tgaaaacttcaacatgtatggaaagaaaaactaagagagtttaacatgtggctcaggtctgagtagcactcacat-aagtcagtaattttaactctggctctcagtgcactcaaaatctccacctgcctacatgaggaggatgaaaatgtgtgtgctggggaaggtactatgga-caaagggatattgaaaagtcaacacataatatctaaaatggaaacatttgaagtggcataaatgtatattatcaaaagacataaagataaagaacaacatatgaactaaaagacttctgtgtggttgtttgccaggaagctggtggctagggagaattgagagggagtagaggggagACCATGTTTTGGAAAAGGGGAAATGAAAGGGAAGCAGGTAGCACCTGGAGCCTGCCTCATGCGGAGAACAGGATTCCACGCAGTGGTCCAGGATCTCAGGGAC--TTACTGTAGCTGAGGCCACCTGCTCCCCAGAACAAGCCCTTGGCACTCAGTCTACTGAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30811580 785 + 171630274 aaCAA-ATCA------AGA--ACC--AGACCAAGACGCAGGATGTATAGAATC-AGGCATCAAGCCATGAAAAGGTGAAAGGGC---------------------------CACAGAA-------CCAGAAAGGAACAGGGTCCCCTGGGTGGGTG---AAAGGCAGAaggaaagccatctccaaagagacgaacttgacaacagccaccatgagtttaaaggtactgagaagacctttgctcaactaagggacagttggtgaattcatttattaaggt------tcatggaaagtaagaaaatgaaaataccaggtaattatcaaatctctgaaaacatcaacatgaatggaaagaaaaactaggagagtttaacatgtggccccggtctgagtagcattcacatcaaatctgtaattttaactctggctctcaatgcactcaaaatctccacctacctacactaggaggatgAAAATGTGAGTGCTGCGGAAGCTACTATGGACTGAAGGGATACTGAAAATTCAA----TAATATCTCAAATGAAAAAAATTGAAGTAGCGTCAAAGTATATTATCAAGAGACAGAACAATAAAGAACAAAGTATGAACTAAGAGGATTCTATGTGGCTCTTTGCCTGGAAGCTGGTGGCTA-GAAGGATTCAGAGGCAGTAGAGGGGGAACCATGTTTTGCAACAGGAGAAATGAAAGGGAAGCAGGTAGCACCTGGAACCTGCCTCATGCAGAGAACAGGGTTCCAAGCAGTGCTCCAGGATCTCGGGGAC--TTACTGTGGCTGAGGTCACCTGT-CCGCAGAACAAGCCCCTGGCACTGAGTCTACTGAAA
i calJac3.chr4             I 11 C 0
s cebCap1.NW_016107755v1    1242210 789 -   1771730 aacaa-atca------aaa--ACC--AGACCAAGACGCAGGATGTATAGAATC-TGCCATCAAGCCATGAAAAGGTGAAAGGGC---------------------------AACAGGA-------CCAGAAAGGAACAGGGTCACCTGGGTGGGTA---GAAGGCAGAAGGGAAGCCATCTCCAAAGAGATGACCTTGACAACAGCCACCATGAGTTTAAAGGTATTGAAAAGACCTTTACTCAACTAAGGGACAGTTGGTGAATTCATTTATTAAGGT------TCATGGAAAGTAAGAAAATGAAAATACCAGGTAATTATCAAATCTCTGAAAACATCAACATGGATGGAAAGAAAAACTAGGAGAGTTTAACAAGTGGCCCTGGTCTGAGTACCATTCACACCAAATCTGTAATTTTAACTCTGGCTCTCAGTGCACTCAAAATCTCCACCTACCTACACTAGGAGGATGAACATGTGTGTGCTGGGGAAGCTACTATGGACTGAAGGGATATTGAAAATTCAATAACTAATATCTAAAATGAAAAGAATTGAAGTAGCATAAAAGTATATTATCAAGAGACAGAACAATAAAGAACAAAATATGAACTAAAAGGCTTCTATGTGCTTGTTTGCCAGGAAGCTGGTGGCTA-GAAGGATTCAGAGGCAGCAGAGGGGGAGCCATGTTTTGCAACAGGAGAAATGAAAGGGAAGCAGGTAGCACCTGGAACCTGCCTCATGCAGAGAACAGGGTTCCAAGCAGTGCTCCAGGATCTCAGGGAC--TTACTGTGGCTGAGGCCACCTGC-CCCCAAAACAAGCCCCTGGCACTGAGTCTACTGAAA
i cebCap1.NW_016107755v1   I 13 C 0
s otoGar3.GL873550           593842 757 +  18854210 ------aaca--------a--aca--agatcaagacacaaggtctgcggaatctgggcatcaatccacgatggggtgaagggactccccacagatgtgcaagagtgaagttaacagggcagtgtcccagaaagaaactagggaacttaggctggtg---ggaagtgagagg--agactttaccaagaa-atgaccttgacaataaccatcatcaatatgaaggtgttaagaagggattt-----actacgaaagagttgggggatacatttattaaagtagaagatcacacaaagcaagaaaatgaaagcctcaggcaattattaaatccctgaaaa---------------aaaatcaaaataagggagtttaacatgtgattcacatttgagtaacattcccgt-aagtcagtaattttatcttggactctccttccactcaaaatcatcatgtacctacactggatggttgaaaatgtgtgtgatgggaaaggtagtgtgggccaaagagatcctgaaaagcccacaca-aatgtctcaaatggagacatttcaggtagcatggatgtaagctaccaagagacatgaagagaaagaagaaaacagaaactaaaaggcttggaagtggttgtttatcagaaaggtaat-----------------------------gggggcaatg---------------gatgaaggGGAAGCAGGTAGCACTAGGAGCCAGGGTCACCAAGAGAATAGGATTATAAGTAGTGGTCCAGGATCCCAGGGACTGTCGCTGTGGCTAGGGCTACTCAC-TGCCAAGAGAAGACCTTGGCAGTGAATCTACTGAAA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58756926 415 -  94987271 T
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=2852302.000000
s hg38.chr6_GL000254v2_alt  1806216 407 +   4827813 TGTGAGGAGGGAGAAGAGGAGGCCTTCAGATATTTGACCTGAGCAGCCTGGCTTACTCTAGACTCTGTCTTGGCTCCTGGCCAGAGATTAATGTAGCAAATTGTCTCTAAATTCATCCAAGGGAGTGGAGTTCCTTCCCCTACTCCTTATCC---CCTTCCACACCATCCT-TTCTGGA------------------AGTGTTATTGTGAACATGTTC----TCGGATTTGTTTTTATCAGTGGA---GAAACAG----------------------------------------------------------AAGACAGAAGAG-CACTCACCCAGCAGAGCCAGAGGGAGGCAGTTCCAAAGACTCCAGTGGCCACCAG---------AGCCCACCAGGACCCAGGGCTGGAGGTGCACAGTGAGATCCTCAGC---GCAGAGGGAGAAATCTCCTAAGAGTAGGAAGGAATAA-CAGAATTAGGAAGCGTTTCCTTACTTCACAG
s panTro5.chr6             30652413 407 + 175400573 TGTGAGGCGGGAGAAGAGGAGGCCTTCGGACATTTGACCTGAGCAGCCTGGCTTACTCTAGACTCTGTCTTGGCTCCTGTCCAGAGATTAATGTAACAAATTGTCTCTAAATTCATCCAAGGGAGTGGAGTTCCTTCCCCTACTCCTTATCC---CCTTCCACACCATCCT-TTCTGGA------------------AGTGTTATTCTGAACATGTTC----TCCGATTTGTTTTTATCAGTGGA---GAAACAG----------------------------------------------------------AAGACAGAAGAG-CACTCACCCAGCAGAGCCAGAGGGAGGCAGCTCCAAAGACTCCAGTGGCCACCAG---------AGCCCACCACGACCCAGGGCTGGAGGTGCACAGTGAGATCCTCAGC---GCAGAGGAAGAAATCTCCTAAGAGTAGGAAGGAATAA-CAGAATTAGGAAGCGTTTCCTTACTTCACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31076315 407 + 173848474 TGTGAGGCGGGAGAAGAGGAGGCCTTCGGACATTTGACCTGAGCAGTCTGGCTTACTCTAGACTCTGTCTTGGCTCCTGTCCAGAGATTAATGTAACAAATTGTCTCTAAATTCATCCAAGGGAGTGGAGTTCCTTCCCCTACTCCCGATCC---CCCTCAACACCATCCT-TTCTGGA------------------AGTGTTATTCTGAACATGTTC----TCTGATTTGTTTTTATCAGTGGA---GAAACAG----------------------------------------------------------AAGACAGAAGAG-CACTCACCCAGCAGAGCCAGAGGGAGGCAGCTCCAAAGACTCCAGTGGCCACCAG---------AGCCCACCACGACCCAGGGCTGGAGGTGCACAGTGAGATCCTCAGC---GCAGAGGAAGAAATCTCCTAAGAGTAGGAAGGAATAA-CAGAATTAGGAAGCGTTTCCTTACTTCACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     581702 407 +   2037526 TGTGAGGCGGGAGAAGAGGAGGCCTTCGGACCTTTGACCTGAGCAGCCTGGCTTACTCTAGACTCTGTCTTGGCTCCTGTCCAGAGATTAATGTAACAAATTGTCTCTAAATTCATCCAAGGGAGTCGAGTTCCTTCCCCTACTCCTTATCC---CCTTCCACACCATCCT-TTCTGGA------------------AGTGTTATTCTGAACATGTTC----TCCGATTTGTTTTTATCAGTGGA---GAAAGAG----------------------------------------------------------AAGACAGAAGAG-CACTCACCCAGCAGAGCCAGAGGGAGGCAGCTCCAAAGACTCCAGTGGCCACCAG---------AGCCCACCACGACCCAGGGCTGGAGGTGCACAGTGAGATCCTCAGC---GCAGAGGAAGAAATCTCCTAAGAGTAGGAAGGAATAA-CAGAATTAGGAAGCGTTTCCTTACTTCACAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75254228 407 + 122973662 TGTGAGGAGGGAGAAGAGGAGGCCTTCGGACATTTGATCTGAGCAGTCTGGCTTACTCTAGACTCTGTCTTGGCTCCTGTCCAGAGATTAATGTAACAGACTGTCTCCAAATACATCCAAGGGAGTGGAGTTCCTTCCCCTACTCCCGATCC---CCCTCAACACCATCCT-TTCTGGA------------------AGTGTTGTTCTGAACATGTTC----TCGGATTTGTTTTTATCAGTGGA---GAAAGAG----------------------------------------------------------AGGATAGAAGAG-CACTCACCCAGCAGAGCCAGAGGGAGGCAGCTCCAAAGACTCCAGTGGCCACCAG---------AGCCCACCACGACCCAGGGCTGGAGGTGCACAGTGAGATCCTCAGC---GCAGAGGGAGAAATCTCCTAAGGGTAGGAAGGAATAA-CAGAATTGGGGAGCATTTCCTTACTTCACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31152422 407 + 172585720 TGCGGGGAGGGACAAGAGGAGGTCTTCGGACCTTTGACCCAAGCAGCCTGGCTTACTCTAGACTCTGTCTTGGCTTCTGTCCAGAGATTAATGTAATAAATTGTCTCCAAATTCACCCAAGGGAGCAGAGTTCCTTCCCCTACTCCTTATCC---CCTTCAACACCATCAT-TTCTGGA------------------AGTGTTATTCTGAACATGTTC----TCAGATTTGTTTTTATCAGTGGA---GAAAGAG----------------------------------------------------------AAGACAAAAGAG-CACTCACCCAGCAGAGCCAGAGGGAGGCAGCTCCAAGGACTCCAGTGGCTACCAG---------AGTCCACCACGATCCAGGGCTGGACATGCACAGTGAGATCTTCAGC---GCAGAGGGAGAAATCTCCTAAGGGTAGGAAGGAAAAA-CAGCGTTGGGAAGCATTTCCTTACTTCACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30444548 407 - 170955103 TGCGGGGAGGGACAAGAGGAGGTCTTCGGACCTTTGACCCGAGCAGCCTGGCTTACTCTAGACTCTGTCTTGGCTTCTGTCCAGAGATTAATGTAATAAATTGTCTCCAAATTCACCCAAGGGAGCAGAGTTCCTTCCCCTACTCCTTATCC---CCTTCAACACCATCAT-TTCTGGA------------------AGTGTTATTCTGAACATGTTC----TCAGATTTGTTTTTATCAGTGGA---GAAAGAG----------------------------------------------------------AAGACAAAAGAG-CACTCACCCAGCAGAGCCAGAGGGAGGCAGCTCCAAGGACTCCAGTGGCTACCAG---------AGTCCACCACGATCCAGGGCTGGACATGCACAGTGAGATCTTCAGC---GCAGAGGGAGAAATCTCCTAAGGGTAGGAAGGAAAAA-CAGCGTTGGGAAGCGTTTCCTTACTTCACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     698622 407 +   1495729 TGCGGGGAGGGACAAGAGGAGGTCTTCGGACCTTTGACCCAAGCAGCCTGGCTTACTCTAGACTCTGTCTTGGCTTCTGTCCAGAGATTAATGTAATAAATTGTCTCCAAATTCACCCAAGGGAGCAGAGTTCCTTCCCCTACTCCTTATCC---CCTTCAACACCATCAT-TTCTGGA------------------AGTGTTATTCTGAACATGTTC----TCGGATTTGTTTTTATCAGTGGA---GAAAGAG----------------------------------------------------------AAGACAAAAGAG-CACTCACCCAGCAGAACCAGAGGGAGGCAGCTCCAAGGACTCCAGTGGCCACCAG---------AGTCCACCACGATCCAGGGCTGGACATGCACAGTGAGATCTTCAGC---GCAGAGGGAGAAATCTCCTAAGGGTAGGAAGGAAAAA-CAGCGTTGGGAAGCATTTCCTTACTTCACAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     816112 406 -    863181 TGTGGGGAGGGACAAGAGGAGGTCTTTGGACCTTTGACCCGAGCAGCCTGGCTTACTCTAGACTCTGTCTTGGCTTCTGTCCAGAGATTAATGTAATAAATTGTCTCCAAATTCACCCAAGGGAGCAGAGTTCCTTCCCCTACTCCTTATCC---CCTTCAACACCATCAT-TTCTGGA------------------AGTGTTATTCTGAACATGTTC----TCAGATTTGTTTTTATCAGTGGA---GAAAGAG----------------------------------------------------------AAGACAAAAGAG-CACTCACCCAGCAGAGCCAGAGGGAGGCAGCTCCAAGGACTCCAGTGGCCACCAG---------AGTCCACCACGATCCAGGGCTGGACACGCACAGTGAGATCTTCAGC---GCAGAGGGAGAAATCTCCT-GGGGTAGGAAGGAAAAA-CAGCGTTGGGAAGCGTTTCCTTACTTCACAG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29994784 407 -  71996105 TGTGGGGAGGGACAAGAGGAGGTCTTCGGACCTTTCATCTGAGCAGCCTGGCTTACTCTAGACTCTGTCTTGGCTTCTGTCCAGAGATTAATGTAATAAATTGTCTCCAAATTCACCCAAGGGAGCGGAGTTCCTTCCTCTGCTCCTTATCC---CCTTCAACACCATCAT-TTCTGGA------------------AGTGTTATTCTGAACATGTTC----TCGGATTTGTTTTTATCAGTGGA---GAAAGAG----------------------------------------------------------AAGATAAAAGAG-CACTCACCCAGCACAGCCAGAGGGAGGCAGCTCCAAGGACTCCAGTAGCCACCAG---------AGTCCACCATGATCCAGGGCTGGACATGCACAGTGAGATCCTCAGC---GCAGAGGGAGAAATCTCCTAAGGGTAAGACGGAAAAA-CAGCGTTGGAAAGCGTTTCCTTACTTCACAG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     612795 405 -   1829203 TGTGGGGAGGGACAAGAGGAGGTCTTCGGACCTTTGACCTGAGCAGCCTGGCTTACTCT--ACACTGTCTTGGCTCCTGTCCAGAGATTAATGTAATAAATTGTCTCCAAATTCACCCAAGGGAGTGGAGTTCCTTCCCCTACTCCTTATCC---CCTTCAACACCACCCT-TTCTGGA------------------AGTGTTATTCTGAACATGTTC----TCGGATTTGTTTTTATCAGTGGA---GAAAGAG----------------------------------------------------------AAGATAAAAGAG-CACTCACCCAGCAGAGCCAGAGGGAGGCAGCTCCAAGGACTCCAGTGGCCACCAG---------AGTCCACCACAATCCAGGGCTGGACATGCACAGTGAGATCTTCAGC---GCAGAGGGAGAAATCTCCTAAGGGTAAGAAGGAAAAA-CAGCGTCGGGAAGCGTTTCCTTACTTCACAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30812365 406 + 171630274 TGTGGGTAGGGACAAGAGGAGGCCTTTGGACCTTTGACCTGAGCAGGCTGGCTTCCTCTAGGCTCTGTCTTGGCTCCTGTACAGAGATTAGTGTAACAGATTGTCTCTTGGTTCGTCCAAGGGAGTGGAGCTCCTTCTTCTATGCCCTAATC---CCCTCAACACCATCCT-TTCTGGA------------------ATTGTTATTCTGAACATGTTA----TCCGATTTGTTTTTATCGGTGGA---GAAAGAC----------------------------------------------------------AGGATAGAAGGA-CACTCACCCAGCAGAGCCAAACAGAGGCAGCTCCAAGGACACCAGCGGCCCCCAG---------AGCCCACCACGACCCAGGGCTTGAGGTGTGCAGTGAGATCTTCAGT---GCAGAGGGAGAAATCTCCTAAG-GTGGGAAGGAAAAG-CAGACTTGAGAAGCGTTTCCTTGCTTCACAG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1242999 406 -   1771730 TGTGGGGAGGGACAAGAGGAGGCCTTCAGACTTTTGGCCTGGGCAGCCTGGCTTTCTCTAGGCTCTGTGTTGGCTCCTGTCCAGAGATTAGTGTAACATGTTGTCTCTAAGTTCCTCCAAGGGAGTGGAGCTCCTTCCCCTATCCCCTAATC---CCCTCAAAACCATCCT-TTGTGGA------------------AGCGTTATTCTGAACATGTTA----TCCGCTTTGTTTTTATCCATGGT---GAAAGAC----------------------------------------------------------AGAATAGAAGGG-CACTCACCCAGCAGAGCCAAAGAGAGGCAGCTCCAAGGACACCAGCGGTCCCCAG---------AGCCCACCACGACCAAGGGCTTGAGACATGCAGTGAGATCTTCAGT---GCAGAGCGAGAAATCTCCTAAG-GTGGGAAGGAAAAA-CAGACTTGAGAAGCGTTTCCTTGCTTCACAG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           594599 465 +  18854210 TATG-GAAAGGACCAGAGAAGCCCTCTGCACCTTTGACCTGAGCAGCCTGGTTCACTCCAA----TGTCTTGGCTCCTTTCCAGAACTTAATGTGATCAATTGTCCCTAA-TTCATCTCCTTGAGTGGAATTCCTCCCCCCCCCCACTTTCTATACCCTGGCCACCACCAT-TTCTGGA------------------AGTGTTACTCTGCACATGTTT----GTGGATTTGTTGATGTCAGTGAA---CAAAGAGTTTAGAAGAATGCTCATCCAtctactgagggtgaccaaataagactctgcctcaaaaaaaaaaaaaaGGG-TGCTCACTCAGCACAGCCAAAAGGAGGCAATTCCAAAGACACTAAAGGTGCCCAG---------AGCCCAGGAGAACCCAGCG-TGAAGGTGTTCAGTGAAAGTCTCATCCAGGCAGAGGGAGAAATCTCCTGAGTTTAGGAAATAAAAGCCAGAATTGGGAAGTTATTCTTTGTTTCTCAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58756511 411 -  94987271 TGAAAAAAAGGGGGTGAGGAGGCA--------------CTGAGCAGC--------CTCTTGACTCTGTCAGGACTCATTTGTAAGCCTTCA-GTGACAAAATGCATGAGAATTCATCTAGAGG-------TCAACTCTTCCACCCCGCATAC---CCTTCACCACTATTATACACTGTATAATAATATACATTATACACCATTATAC--AGCATGCTCCTATTCCTTTCCTTTTTCTCCCATAGACATGAAAGAA----------------------------------------------------------ATGCTAACAGGGTTACCTACCCAGCACAGACAGAGAGCTGCAGCTCCCAACACTCCTGTGGTGACCAGGATGGGGGCAATCCCCCAAAGCCTAGGACTAGAAGAGACCCAAAGAAGTTTCAGC---CTCAAGGGAGAGATGTCCTAAGGGCAGAAAGAAAAGT-CAGAGTTAGGAAAGCATCCCTTGCTTCAGAG
i mm10.chr17               T 415 N 0
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=3671217.000000
s hg38.chr6_GL000254v2_alt  1806623 569 +   4827813 TGAGTGCAAACATGATGGGAAGGCATAGAGAAAAAG--TAAGAAATTATAGGGAAACGTGCTTATTTAGGGGGAGGCGATACTGCGGGAGGGGTACACCAGACCC----AGCACTGCCGTGGGGTAGGAGAAACAGGTATAACCCTTGACTAGAGAATGGATACTTGAGGATCAGTATAGTCACTAGATGAAGAGGACTACATACATTTTAAGGACATTGATGTACATTATAGTGTATCATTGGAAGTTAAGGGAAAAGAAAAGAAACTTCATAAATAAAAACAGGCTGCA-TGTGGTAAAATCAATAATCAGCCCTGGGACTTGTGTTTTCAAAACGCTTTATCCAGGT----GTGACACCTCTGACATCCTGGATTCCCCACCCTCTAGCACCCAGTTCCCTCTCCTGTAATGAGACCAGGGTCA-GGAGGAGAGATGGACAGATGGGCCCATGCTGAA-GGCAGTCAGTCACCTGTGCCTGCAGATGAGAAACCGCCGCCTAACCTTTCTGAACC---TCATGCGGAAAAAA--TGTTTGCACCACTAGCCTCCAGCACAGAGATTCCATCCCAGCTCagtatt
s panTro5.chr6             30652820 569 + 175400573 TGAGTGCAAACATGATGGGAAGGCATAGAGAAAAAA--GAAGAAATTATAGGGAAACGTGCTTATTTAGGGGGAGGTGATACTGCGGGAGGGGTACACCAGACCC----AGCACTGCCGTGGGGTAGGAGAAACAGGTATAACCCTTGACTAGAGAATGGATACTTGAGGATCAGTATAGTTACTAGGTGAAGAGGACTACATACGTTTTAAGGACATTGATGTACATTATAGTGTATCATTGGAAGTTAAGGGAAAAGAAAATAAACTTCATAAATAAAAACAGGCTGCA-TGTGGTAAAATCAATAATCAGCCCTGGGACTTGTGTTTTCAAAACGCTTTATCCAGGT----GTGACACCTCTGACATCCTGGATTCCCCACCCTCTAGCACCCAGTTCCCTCTCCTGTAATGAGACCAGGGTTA-GGAGGAGAGATGGACAGATGGGCCCATGCTGAA-GGCAGTCAGTCACCTGTGCCTGCAGATGAGAAACCGCCGCCTAACCTTACTGAAAC---TCATGCGGAAAAAG--AGTTTGCACCACTAGCCTCCAGCACAGAGATTCCATCCCAGCTCagtatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31076722 569 + 173848474 TGAGTGCAAACATGATGGGAAGGCATAGAGAAAAAG--GAAGAAATTATAGGGAAACGTGCTTATTTAGGGGGAGGTGATACTGAGGGAGGGGTACACCAGACCC----AGCACTGCCGTGGGGTAGGAGAAACAGGTATAACCCTTGACTAGAGAATGGATACTTGAGGATCAGTATAGTTACTAGGTGAAGAGGACTACATACGTTTTAAGGACATTGATGTACATTATAGTGTATCATTGGAAGTTAAGGGAAAAGAAAATAAACTTCATAAATAAAAACAGGCTGCA-TGTGGTAAAATCAATAATCAGCCCTGGGACTTGTGTTTTCAAAACGCTTTATCCAGGT----GTGACACCTCTGACATCCTGGATTCCCCACCCTCTAGCACCCAGTTCCCTCTCCTGTAATGAGATCAGGGTTA-GGAGGAGAGATGGACAGATGGGCCCATGCTGAA-GGCAGTCAGTCACCTGTGCCTGCAGATGAGAAACCGCCGCCTAACCTTACTGAAAC---TCATGCGGAAAAAG--AGTTTGCACCACTAGCCTCCAGCACAGAAATTCCATCCCAGCTCagtatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     582109 569 +   2037526 TGAGTGCAAACATGATGGGAAGGCATAGAGAAAAAG--GAAGAAATTATAGGGAAACGTGCTTATTTAGGGGGAGGTGATACTGCGGGAGGGGTACACCAGACCC----AGCACTGCCGTGGGGTAGGAGAAACAGGTATAATCCTTGACTAGAGAATGGATACTTGAGGATCAGTATAGTTACTAGGTGAAGAGGACTACATACGTTTTAAGGACATTGATGTACATTATAGTGTATCATTGGAAGTTAAGGGAAAAGAAAATAAACTTCATAAATAAAAACAGGCTGCA-TGTGGTAAAATCAATAATCAGCCCTGGGACTTGTGTTTTCAAAACGCTTTATCCAGGT----GTGACACCTCTGACATCCTGGATTCCCCACCCTCTAGCACCCAGTTCCCTCTCTTGTAATGAGACCAGGGTTA-GGAGGAGAGATGGACAGATGGGCCCATGCTGAA-GGCAGTCAGTCACCTGTGCCTGCAGATGAGAAACCGCCGCCTAAGCTTACTGAAAC---TCATGCGGAAAAAG--AGTTTGCACCACTAGCCTCCAGCACAGAGATTCCATCCCAGCTCagtatt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75254635 569 + 122973662 TGAGTGCAAACATGATGGGAAGGCATAGAGGAAAAG--GAAGAAATTATAGGGAAAGGTGCTTATTTAGGGGGAGGTGATACTGCGGGAGGGGTACACCAGACCC----AGCACTGGCGTGGGGTAGGAGAAAGAGGTATAACCCTTGACTAGAGAATGGATACTTGAGGATCAGTATAGTTACTAGGTGAAGAGGACTACATGCGTTTTAAGGACATTGATGTACATTATAGTGTATCATTGGAAGTTAAGGGAAAAGAAAAGAAACTTCATAAATAAAAACAGGCTGCA-TGTGGTAAAATCAATAATCAGCCCTGGGACTTGTGTTTTCAAAACCCTTTATCCAGGT----GCGACACCTCTGATGTCCTGGATTCCCCACCCTCTAGCACCCAGTTCCCTCTCCTGTAATAAGACCGGGGTCA-GGAGGAGAGATGGACAGATGGGCCCATGCCGAA-GGCAGTCAGTCACCTGTGCCTGCAGATGAGAAACCGACGCCTAACCTGACTGAACC---TCATGCGGAAAAAG--AATTTGCACCACTAGCCTCCAGCACAGAGATTCCATCCCAGCTCAGTatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31152829 567 + 172585720 TGAGTGCAAACATGATAGGAAGGCATAGAGCAAAAG--GAAGAAATTATAGGGAAAGGTGCTTGTTTAGGGGGAGATGATGCTGCGGGAGGGGTACACCAGACCC----AGCACTGGTGGGGGGTAGGAGAAACACGTATAACCCTTGACTAGAGAATGGATACTTAAGGATCAATATAGTTACTAGGTGAAGAGGACTACATACGTTTTAAGGACGTTGATGTACATTATAGTGTACTATTGGAAGTTAAGGGGAAAGAAAAGAAATTTCATTAATAAAAACAGGCTGCA-TGTAGTAAAATCAATAATCAGCCCTGGGACTTGTGTTTTCAAAACACTTTATCCAAGT----GCGACCCCTCTGACTTCCTGGAATCCCCACCCTCTAGCACCCAGTTCCCTCTCCTGTAATGAGA--AGGGTCA-GGAGGAGAGATGGACACATAGGCCCATGCTGAA-GGCAGTCAGTCACCTGTGCCTGCAGATGAGAAACCGCAGCCTAACCTGACGGAACC---TCATGCGGAAAAAG--AGTTTGAACCACTAGCCTCCAGCACAGGGATTCCATCCCAGCTCAGTATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30444955 567 - 170955103 TGAGTGCAAACATGATGGGAAGGCATAGAGCAAAAG--GAAGAAATTATAGGGAAAGGTGCTTGTTTAAGGGGAGATGATGCTGCGGGAGGGGTACACCAGACCC----AGCACTGGTGGGGGGTAGGAGAAACACGTATAACCCTTGACTAGAGAATGGATACTTAAGGATCAATATAGTTACTAGGTGAAGAGGACTACATACGTTTTAAGGACGTTGATGTACATTATAGTGTACTATTGGAAGTTAAGGGGAAAGAAAAGAAATTTCATTAATAAAAACAGGCTGCA-TGTAGTAAAATCAATAATCAGCCCTGGGACTTGTGTTTTCAAAACGCTTTATCCAAGT----GCGACCCCTCTGACTTCCTGGAATCCCCACCCTCTAGCACCCAGTTCCCTCTCCTGTAATGAGA--AGGGTCA-GGAGGAGAGATGGACACATAGGCCCATGCTGAA-GGCAGTCAGTCACCTGTGCCTGCAGATGAGAAACCGCAGCCTAACCTGACGGAACC---TCATGCGGAAAAAG--AGTTTGAACCACTAGCCTCCAGCACAGAGAATCCATCCCAGCTCAGTATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     699029 567 +   1495729 TGAGTGCAAACATGATAGGAAGGCATAGAGCAAAAG--GAAGAAATTATAGGGAAAGGTGCTTGTTTAAGGGGAGATGATGCTGCAGGAGGAGTACACCAGACCC----AGCACTGGTGGGGGGTAGGAGAAACACGTATAACCCTTGACTAGAGAATGGATACTTAAGGATCAATATAGTTACTAGGTGAAGAGGACTACATACGTTTTAAGGACGTTGATGTACATTATAGTGTACTATTGGAAGTTAAGTGGAAAGAAAAGAAATTTCATTAATAAAAACCGGCTGCA-TGTAGTAAAATCAATAATCAGCCCTGGGACTTGTGTTTTCAAAACGCTTTATCCAGGT----GCGACCCCTCTGACTTCCTGGATTCCCCACCCTCTAGCACCCAGTTCCCTCTCCTGTAATGAGA--AGGGTCA-GGAGGAGAGATGGACACATAGGCCCATGCTGAA-GGCAGTCAGTCACCTGTGCCTGCAGATGAGAAACCGCAGCCTAACCTGACGGAACC---TCATGCGGAAAAAG--AGTTTGAACCACTAGCCTCCAGCACAGAGAATCCATCCCAGCTCAGTATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     816518 568 -    863181 TGAGTGCAAACATGATAGGAAGGCATAGAGCAAAAG--GAAGAAATTATAGGGAAAGGTGCTTGTTTAGGGGGAGATGATGCTGCGGGAGGGGTACACCAGACCC----AGCACTGGTGGGGGGTAGGAGAAACACGTATAACCCTTGACTAGAGAATGGATACTTAAGGATCAATATAGTTACTAGGTGAAGAGGACTACATACGTTTTAAGGACGTTGATGTACATTATAGTGTACTATTGGAAGTTAAGGGGAAAGAAAAGAAATTTCATTAATAAAAACAGGCTGCA-TGTAGTAAAATCAATAATCAGCCCTGGGACTTGTGTTTTCAAAATGCTTCATCCAGGT----GCGACCCCTCTGACTTCCTGGATTCCCCACCCTCTAGCACCCGGTTCCCTCTCCTGTAATGAGA-CGGGGTCA-GGAGGAGAGATGGACACATGGGCCCATGCTGAA-GGCAGTCAGTCACCTGTGCCTGCAGATGAGAAACCGCAGCCTAACCTGACGGAACC---TCATGCGGAAAAAG--AGTTTGAACCACTAGCCTCCAGCACAGGGATTCCATCCCAGCTCAGTATT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29995191 568 -  71996105 TGAGTGCAAACATGATAGGAAGGCATAGAGAAAAAG--GAAGAAATTATAGGGAAAGGTGCTTGTTTAGGGGGAGGTGATGCTGCGGGAGGGATGCACCAGACCC----AGCACTGGTGGGGGGTAGGAGAAACAGGTATAACCCTTGACTAGAGAATGGATACTTAAGGATCAGTATAGTTACTAGGTGAGGAGGACAACATATGTTTTAAGGACGTTGATGTACATTATAGTGTACCATTGGAAGTTAAGGGGGAAAAAAAGAAACTTCATTAATAAAAACAGGCTGCA-TGTAGTAAAATCAATAATCAGCCCTGGGACTTGTGTTTGCAAAATGCTTTATCCAGGT----GCGACCCCTCTGACTTCCTGGATTCCCCACCCTCTAGCACCCGGTTCCCTCTCCTGTAATGAGA-CGGGGTTA-GGAGGAGAGATGGACACATGGGCCCACGCTGAA-GGCAGTCAGTCACCTGTGCCTGCAGATGAGAAACCGCAGCCTAACCTGACCGAACC---TCAAGCGGAAAAAG--AGTTTGAACCACTAGCCTCCAGCACAGGGATTCCATCCCAGCTCAGTATT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     613200 567 -   1829203 TGAGTGCAAACATGATAGGAAGGCATAGAGAAAAAG--GAAGAAATTATAGGGGAAGGTGCTTGTTTAGGGGGAGGTGATGCTGC-GGAGGGGTACACCAGACCC----AGCACTGGTAGGGGGTAGGAGAAACAGGTATAACCCTTGACTAGAGAATGGATACTTAAGGATCAGTATACTTACTAGGTGAAGAGGACTACATACGTTTTAAGGACGTTGATGTACATTATAGTGTACCATTGGAAGTTAAGGGAAAAGAAAAGAAACTTCATTAATAAAAACAGGCTGCA-TATAGTAAAATCAATAATCAGCCCTGGGACTTGTGTTTTCAAAACGCTTTATCCAGAT----GCAACCCCTCTGATTTCCTGGATTCCCCACCCTCTAACTCCCAGTTCCCTCTCCTGTAATGAGA-GGGGGTCA-GGAGGAGAGACGGACACATGGGCCCATGCTGAA-GGCAGTCAGTCACCTGTGCCTGCAGATGAGAAACCGCAGCCTAACCTGACGGAACC---TCATGCGGAAAAAG--AGTTTGAACCACTAGCCTCCAGCACAGGGATTCCATCCCAGCTCAGTATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30812771 541 + 171630274 TGAGTGCAAACATGATGAGCAGGCACAGAGGAAAAG--GAAGAAATTATAGGGAAAGGTGCTTGGCTAGGGGGAGGTAACATGGGACGAGGGGTAGACCAGACCC----AGCACTAGGGAGAGGTAGGAGAAACAAGTATAACCCTTATATAGAGAATGGATACTTGAGGGTCTGTATAGTTACTGAGTGAAAAGGATTACATACGTTTTAAGGACATTAATGTACGTTATAGTTTATCACTGGAACTTAAGGGAAAGTAAAGGAAATTTCATAAATAAAAACAGGCTGCA-GGTGGTAACATCAATAGTCAGTCCTGGGACTTGTGTTTTCAAAACCTTTTATCCAGGT----GCCGGACCTCTGACTTCCTACATTATCAACCCTCCAGCACCCTGTTCCCTCTCCTGTGATGAGACTGGGGTCA-GGAGAAGAGATGGCCAGATGGGCCCATGCTGAAGGGCAGTCAGCC-CCTGTGCCTGCA---------------------------GGACC---TTCTGCAGAAAAAG--AATTTGCACCGCTAGCCTCCAGCACAGGAATTCCATCCC-ATTCAGTATT
i calJac3.chr4             C 0 I 3
s cebCap1.NW_016107755v1    1243405 547 -   1771730 TGAGTGCAAACATGATGAGCAGGCACAGAGGAAAAG--GAAGAAATTATAGGGAAAGGTTCTTGGGTAGGGGGAGGTCACATGGGGCCAGCGGTAGACCAGACCC----AGCACTAGTGAGAGGTAGGAGAAACATGTATAATCCTTATCTAGAGAATGGATACTTGAGGGTCTGCATAGTTACCAAGTGAAGAGGATTGCATGCGTTTTAAGGACATTGATGTCCGTTATAGTTTATCATTGGAAGTTAAGGGAAAGGAAAGGAAATTTCATAAATAAAAACAGGCTGCA-GGTGGTAACATCAATAGTCAGCCCTGGGACTTGTGTTTTCAAAACCTTTTATCCAAGTGCCAGCCAGACCTCTGACTTCCTACATTATCAACCCTCCAGCACCCTGTTCCCTCTCCTGTGATGGGACGGGGTTCA-GGACGAGAGATGGACAGATGGGCCCATGCTGAAGGGCAGTCAGTCACCTGTGCCTGCA---------------------------GGACC---TTCTGCAGAAAAAG--AGTTTGCACCGCCAGCCTCCAGCACAGGGATTCCATCCCAACTCAGTGTT
i cebCap1.NW_016107755v1   C 0 I 28
s otoGar3.GL873550           595064 511 +  18854210 AGAGTGCAAACATACTGGAAACTCCTGGAGAAAAAGAAGAGAGAATT----GCAAAGGCCCTGGGGTGTGGGG-------------GAGGGGGTATGATGGCCTCCCTGGGCACTGGTGAGAGTGGGGGG---CAGGTTTACTCCTAGAATGGACTGTGGATACTTAAAAGTCAAGATA-TTACTGGGTGAAGATGG-TACATATGTTTGAAGAACCTTGAGGTATTTTATA-------ATTGGAAGTGAGGGGAAAAGAAGTAAAACTTCATAAATAAGAACAAATTGGAGTGTGGTG----TAACAGTCAGCCCTGGGTCCTACATTTTTTAAATCTTGTATCCAGGT----GCTCGTCCTCTCCCTTCCTGGATACCTGGCCCTCCTGTGCCCA-TAATCCCTTCTGTCATATTA-GAGTCTCACAGACAAGAGGTGGACAGGAGGACCCATGCTAAA------------------GCTTCCACATGAGAAATCA----CTACCCTGATAGGGTCTTATTATACTGTAAAAGAAAGTTTTCTTCTC------CCAATTCAAGGTTTCCATCCTAG---------
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=89704.000000
s hg38.chr6_GL000254v2_alt  1807192 19 +   4827813 tagtat-------------ttagagatttagt
s panTro5.chr6             30653389 19 + 175400573 tagtat-------------ttagagatttagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31077291 19 + 173848474 tagtat-------------ttagagatttagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     582678 19 +   2037526 tagtat-------------ttagagatttagt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75255204 19 + 122973662 tagtat-------------ttagagatgtagt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31153396 19 + 172585720 TAGTAT-------------TTAGAGATGTAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30445522 19 - 170955103 TAGTAT-------------TTAGAGATGTAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     699596 19 +   1495729 TAGTAT-------------TTAGAGATGTAGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     817086 19 -    863181 TAGTAT-------------TTAGAGATGTGGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29995759 19 -  71996105 TAGTAT-------------TTAGAGATGTACT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     613767 19 -   1829203 TAGTAT-------------TTAGAGATGTAGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30813315 32 + 171630274 TGGGATGGAATACTAAATACTATAGATTTAGT
i calJac3.chr4             I 3 C 0
e otoGar3.GL873550           595575  0 +  18854210 C
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e cebCap1.NW_016107755v1    1243952 28 -   1771730 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=2451909.000000
s hg38.chr6_GL000254v2_alt  1807211 388 +   4827813 atttagtatttagAGATTCCTAAATACCGAGGACTCTGCCCAGTCTGG-TTTGACCATGCTCCTCCTTCCTCACACTGTGGGGCCCCAGCT-TTCCCTCCCAAT-----TCCACACCCCCAGATGCTGGTACCATGCTCAGGTTCATCGTGGACACCACTCCATCCGACATGGCAACACTTTTGATCCAGCCGCTTT--GACAACCTCGTTCAGTCTCCTCTGGAGACAG-CCACCCAGACCTTTGCTGATGAGCTGGGACTGA-GGGGAAAAGGC-CTGC--------GATCTCTGATGGGGTTGGCAATGGAC---ACCAAAGTCGTCTTCTAAAGACCAAGTAC--GCTCTAACCACGGAAATCGTCTCTAACCACTGACTCCTCCAGAAAAGGAAGAAAGAAGCCTCTC
s panTro5.chr6             30653408 386 + 175400573 atttagtatttagAGATTCCTAAATACCGAGGACTCTGCCCAGTCTGG-TTTGACCATGCGCCTCCTTCCTCACACTGTGGGGCCCCAGCT-TTCCCTCCCAAT-----TCCACACCCCCAGATGCTCGTACCATGCTCAGGTTCATCGTGGACACCACTCCATCCGACATGGCAACACTTTTGATCCAGCCGCTTT--GACAACCTCGTTCAGTCTCCTCTGGAGACAG-CCACCCAGACCTTTGCTGATGAGCTGGGACTGA-GGGGAAAAGGC-CTGC--------GATCTCTGATGGGGTTGGCAATGGAC---ACCAAAGTCGTCTTCTAAAGACCAGGTAC--GCTCTAACCACGGAAATCG--TCTAACCACTGACTCCTCCAGAAAAGGAAGAAAGAAGCCTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31077310 386 + 173848474 atttagtatttagAGATTCCTAAATACCGAGGACTCTGCCCAATCTGG-TTTGACCATGCGCCTCCTTCCTCACACTGTGGGGCCCCAGCT-TTCCCTCCCAAT-----TCCACACCCCCAGATGCTCGTACCATGCTCAGGTTCATCGTGGACACCACTCCATCCGACATGGCAACACTTTTGATCCAGCCGCTTT--GACAACCTCGTTCAGTCTCCTCTGGAGACAG-CCACCCAGACCTTTGCTGATGAGCTGGGACTGA-GGGGGAAAGGC-CTGC--------GATCTCTGATGGGGTTGGCAATGGAC---ACCAAAGTCGTCTTCTAAAGACCAGGTAC--GCTCTAACCACGGAAATCG--TCTAACCACTGACTCCTCCAGAAAAGGAAGAAAGAAGCCTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     582697 385 +   2037526 a-ttaatatttagAGATTTTTAAATACCGAGGACTCTGCCCAGTCTGG-TTTGACCATGCGCCTCCTTCCTCACACTGTGGGGCCCCAGCT-TTCCCTCCCAAT-----TCCACACCCCCAGATGCTGGTAGCATGCTCAGGTTCATCGTGGACCCCACTCCATCCGACATGGCAACACTTTTGATCCAGCCGCTTT--GACAACCTCGTTCAGTCTCCTCTGGAGACAG-CCACCCAGACCTTTGCTGATGAGCTGGGACTGA-GGGGAAAAGGC-CTGC--------GATCTCTGATGGGGTTGGCAATGGAC---ACCAAAGTCGTCTTCTAAAGACCAGGTAC--GCTCTAACCACGGAAATCG--TCTAACCACTGACTCCTCCAGAAAAGGAAGAAAGAAGCCTCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75255223 377 + 122973662 atttagtatttcgagattCCTAAATACCGAGGACTCTGCCCAGTCT-G-TTTGACCATGCACCTCCTTCCTCACACTGTGGGGCCCCAGCT-TTCCCTCCCAAT-----TCCACACCCCCAGATGCTGGTACCATGCTCAGGTTCATCGTGGACACCGCTCCATCCGACATGGCAACACTTTTGATCCAGCCGCTTT--CACAACCTCCTTCAGTCTCCTCTGGAGAGAG-CCACCGAGCTCTTTGCTGATGAGCTGGGACTAA-GGGGAAAGGG--CTGC--------GATCTCGGATGGGGTTGGCAATGGAC---AGCAAAGTCGTCTTCTAAAGACCAAGTAC--GCTCTAACTATGGAAA-----TCTAACCACTGACTCCTCCAGAA----AAGAAGGAAGCCTTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31153415 382 + 172585720 A-------TTTCGAGATCCCTAAATACTGAGGACTCTGCCCAGTCTGG-TTTGACCATGGGCCTCCTTCCTCACACTGTGGGGCCCCAGCT-TTCCCTCCCAAT-----TCCACACCCCCAGATGCTGTTACCATGCTCAGGTTAATCGTGGACACCGCTCCATCCGACATGGCAACACTTTTGATCCAGCCGCTTT--GACAACCTCGTTCAGTCTCCTCTGGAGACAG-CCACCAAGCCCTTTGCTGATGAGCTGGGACTGACAGGGAACAGGG-CTGC--------GATCTCGGATGCGGTTGGCAATGGAC---ACCAAAGTCGTCTTCTAAAGACCAAGTAC--GCTCTAACCACGGAATTCGTCACTAACCAGTGACTCCTCCAGAAGAGGAAGAAAGAAGCCTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30445541 382 - 170955103 A-------TTTCGAGATCCCTAAATACTGAGGACTCTGCCCAGTCTGG-TTTGACCATGGGCCTCCTTCCTCACACTGTGGGGCCCCAGCT-TTCCCTCCCAAT-----TCCACACCCCCAGATGCTGGTACCATGCTCAGGTTCATCGTGGACACCGCTCCATCCGACATGGCAACACTTTTGATCCAGCCGCTTT--GACAACCTCGTTCAGTCTCCTCTGGAGAGAG-CCACCGAGCCCTTTGCTGATGAGCTGGGACTGACAGGGAACAGGG-CTGC--------GATCTCGGATGCGGTTGGCAATGGAC---ACCAAAGTCGTCTTCTAAAGACCAAGTAC--GCTCTAACCACGGAATTCGTCTCTAACCAGTGACTCCTCCAGAAGAGGAAGAAAGAAGCCTGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     699615 382 +   1495729 A-------TTTCGAGATCCCTAAATACTGAGGACTCTGCCCAGTCTGG-TTTGACCATGGGCCTCCTTCCTCACACTGTGGGGCCCCAGCT-TTCCCTCCCAAT-----TCCACACCCCCAGATGCTGGTACCATGCTCAGGTTCATCGTGGACACCGCTCCATCCGACATGGCAACACTTTTGATCCAGCCGCTTT--GACAACCTCGTTCAGTCTCCTCTGGAGAGAG-CCACCAAGCCCTTTGCTGATGAGCTGGGACTGACAGGGAACAGGG-CTGC--------GATCTCGGATGCGGTTGGCAATGGAC---ACCAAAGTCGTCTTCTAAAGACCAAGTAC--GCTCTAACCACGGAATTCGTCTCTAACCAGTGACTCCTCCAGAAGAGGAAGAAAGAAGCCTGTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     817105 383 -    863181 A-------TTTCGAGATCCCTAAATACTGAGGACTCTGGCCAGTCTGG-TTTGACCAGGTGCCTCCTTCCTCACACTGTAGGGCCCCAGCT-TTCCCTCCCAAT-----TCCACACCCCCAGATGCTGGTACCATGCTCAGGTTCATCGTGGACACCGCTCCATCCGACATGGCAACACTTTTGATCCAGCCGCTTT--GACAGCCTCGTTCAGTCTCCTCTGGAGAGAG-CCACCGAGCCCTTTGCTGATGAGCTGGGACTGACAGGGAACAGGGACTGC--------GATCTCGGATGTGGTTGGCAATGGAC---ACCAAAGTCGTCTTCTAAAGACCAAGTAG--GCTCTAACCACGGAATTCGTCTCTAACCAGTGACTCCTCCAGAAGAGGAAGAAAGAAGCCTCTC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29995778 382 -  71996105 A-------TTTCAAGATTCCTAAATACTGAGGACTCTGGCCAGTCTGG-TTTGACCATGTGCCTCCTTCCTCACACTGTGGGGCCCCAGCT-TTCCCTCCCAAT-----TCCACACCCCCAGATGCTGGTACCATGCTCAGGTTCATCGTGGACACCGCTCCATCCGACATGGCAACACTTCTGATCCAGCCGCTTT--GACAGCCTCGTTCAGTCTCCTCTGGAGAGAG-CCACCGAGCCCTTTGCTGAGGAGCTGGGACTGACAGGGAACAGGG-CTGC--------GATCTCGGATGGGGTTGGGGATGGAC---ACCAAAGTCGTCTTCTAAAGACCAAGTGG--GCTCTAACCACGGAATTCGTCTCTAACCACTGACTCCTCCAGAAGAGGAAGAAAGAAGCCTCTC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     613786 364 -   1829203 A-------TTTCGAGATTCCTAAATACTGAGGACTCTGGCCAGTCTGG-TTTGACCATGTGCCTCCTTCCTCACACTGTGGGGCCCCAGTT-TTCCCTCCCAAT-----TCCACACCCCCAGATGCTGGTACCATGCTCAGGTTCATCGTGGACACCGCTCCATCCGACATGGCAACACTTTTGATCCAGCCGCTTT--GACAACCTCGTTCAGTCTCCTCTGGAGAGAG-CCACCGAGCCCTTTGCTGATGAGCTGGGACTGACAGGGAATAGGG-CTGC--------GATCTCGGATGGGGTTGGCAATGGAC---ACCAAAGTCGTCTTCTAAAGACCAAGTAC--GCTCTAACCACGGAATTCGTCTCTAACC------------------GGAAGAAAGAAGCCTGTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30813347 388 + 171630274 ATTTAGTATTTAGAGATTCCTAAATACTGAGGGCTCTGCCCAGTCTGG-TTTGATAATGAGCCTCCTTCCTTCCACTGTGCGGCCCCGGCT-TTACTTCCCATT-----TCCACACCCCCAGATTCTGGTACCAAGCTCAGGTTCAGGGTGGAAACCGCTCCATGCGACATGGCAATGCTTTTGATTCAGGGGCTCT--GACAACTTCGTCCAGTCTTCTCCCGAGGGAG-CCACCGAGCCCTTTGCTGAAGAGCTGGGACTGACGGGGAACAGGG-CTGC--------GATCTCTGAAGGGGTTGGAGTTGGAC---ACCACAGTCGTCTTCAAACCAGCGAGTAG--GCTCTAACTCCGGAATTC-TCTCTAACCCCTGACTCCTCCAGAAGAGGAAGAAAGAAGCCTCTC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1243980 388 -   1771730 ATTTAGTATTTAGAGATTCCTAAATACTGAGGGTTCTGCCCAGTCTGG-TTTGACCATGAGCCTCCTTCCTTCCACTGTGGGGACCCGCCT-TTAATTCCCATC-----TCCACACCCCCAGATCCTGGTACCAGGCTCAGGATCATCGTGGAAGCCGCTCCATCCGACATGGCAACACTTTTGATTCAGACGCTTT--GACAACCTCGTCCAGTCTCCTCTGGAGGAAG-ACACCGAGCCCTTGGCTGATGAGCTGGGACTGACGGGGAACA-GG-CTGC--------GATCTCAGAAGGGGTTGGGGTTGGAC---GCCAGAGTCGTCTTCTAACCTCCGCGTGG--GCTCTAACCACGGAATTCAACTCCAACCACTGACTCCTCCAGAAGAGGAAGAAAGAAGCCTCTC
i cebCap1.NW_016107755v1   I 28 I 2
s otoGar3.GL873550           595575 387 +  18854210 ---------TTGGAGATTCCTGAA-ACTGAGGGCTCAGTCCAGTGGGGTTTTAACTGTGTGCTCCCTTCC-CGTGCTCCTGGACCCAGGCTATCCCCTCCCTGTCCTGCTCTACATGCCCAGATCTTCCTGCAAGAGTCAGGTTCATCGCAGGTGCTCCTTGGTCCTCTGTGGCAGTGCTTCTGATCCAGCCACTCTCCAACAATCTTGTCCAGTCTCCTCTAGTGAGTGCCCAGCCTGCCCTTTACTGGTGAGCTCTGGCTGAGGGGAAATTGGG-CTCCCATCTCTTGATCTTAGATAGGGCTGGGAAGAGACACTACTAAAGTTTTCTTTTAAGCACCAAGCACCAACATTATCATCTCTGTTTCTCCCTATCT-CTATCTCTCT-------------AAGACACCTCTC
i otoGar3.GL873550         C 0 C 0
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=7098.000000
s hg38.chr6_GL000254v2_alt  1807599 1 +   4827813 T
s panTro5.chr6             30653794 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31077696 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     583082 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75255600 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31153797 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30445923 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     699997 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     817488 1 -    863181 T
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29996160 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     614150 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1    1244370 1 -   1771730 T
i cebCap1.NW_016107755v1   I 2 C 0
s otoGar3.GL873550           595962 1 +  18854210 T
i otoGar3.GL873550         C 0 I 167
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e calJac3.chr4             30813735 0 + 171630274 C
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=71808.000000
s hg38.chr6_GL000254v2_alt  1807600 15 +   4827813 --ACAC-TAAGCTGAAAC
s panTro5.chr6             30653795 15 + 175400573 --ACAC-TAAGCTGAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31077697 15 + 173848474 --ACAC-TAAGCTGAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     583083 17 +   2037526 ACACAC-TAAGCTGAAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75255601 15 + 122973662 --ACGC-AAGGCTGAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31153798 15 + 172585720 --ACAC-TAAACTGAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30445924 15 - 170955103 --ACAC-TAAACTGAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     699998 15 +   1495729 --ACAC-TAAACTGAAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     817489 15 -    863181 --ACAC-TAAACTGAAAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29996161 15 -  71996105 --ACAC-TAAGCTGAAAC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     614151 16 -   1829203 --GCGCTTAAAATGAAAC
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1    1244371 15 -   1771730 --ACAC-GAAGCTGAAAC
i cebCap1.NW_016107755v1   C 0 T 21452
e otoGar3.GL873550           595963 167 +  18854210 I
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e calJac3.chr4             30813735  0 + 171630274 C
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=416136.000000
s hg38.chr6_GL000254v2_alt  1807615 160 +   4827813 ACTAAATACACTAAGTGTTG-ATTAAGTAGACTAGGTACACTAAGTGGTAAACTTGGTAAACTTAGAGCACTAAGTACACTAAGTACAATAAATGGTAAACTTGGT-AAACTTAGAGCACTAAGTGCACTAAGTTCACTAAGTAATAATATTAGTACTAAGT
s panTro5.chr6             30653810 108 + 175400573 ACTAAA-----TAAGTGTTGTATTAAGTAGACTAGGTACACTAAG------------------------------------------------TGGTAAACTTGGT-AAACTTAGAGCACTAAGTGCACTAAGTTCACTAAGTAATAATATTAGTACTAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31077712 108 + 173848474 ACTAAG-----TAAGTGTTGTATTAAGTAGACTAGGTACACTAAG------------------------------------------------TGGTAAACTTGGT-AAACTTAGAGCACTAAGTGCACTAAGTTCACTAAGTAATAATATTAGTACTAAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     583100 109 +   2037526 ACTAAG-----TAAGTGTTGTATTAAGTAGACTAGGTACACTAAG------------------------------------------------TGGTAAACTTGGTAAAACTTAGAGCACTAAGTGCACTAAGTTCACTGAGTAATAATATTAGTACTAAGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75255616 113 + 122973662 ATGAAATACACTAAGTGTTATATTAAGTACACTAGGTACACTAAGTGGTAAACTTG------------------------------------------------GT-AAACTTAGAGCCCTAAGTGCACGCAGTACACTCAGTAATAATATCAGCCCTAAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31153813 161 + 172585720 ACTAAATACACTAAGTGTTATATTAAGTACACTAGGTACACTAAGTGGTAAACTTGATCAACTTAGAGCACCAAGTGCACTAAGTACAGTAAATGGTAAACTTGGT-CAACTTAGAGCACTATGTGCAATAAGTACACTAAGTAATAATATGAGTAATAAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30445939 161 - 170955103 ACTAAATACACTAAGTGTTATATTAAGTACACTAGGTACACTAAGTGGTAAACTTGATCAACTTAGAGCACCAAGTGCACTAAGTACAGTAAATGGTAAACTTGGT-CAACTTAGAGCACTATGTGCAATAAGTACACTAAGTAATAATATGAGTAATAAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     700013 161 +   1495729 ACTAAATACACTAAGTGTTATATTAAGTACACTAGGTACACTAAGTGGTAAACTTGATCAACTTAGAGCACCAAGTGCACTAAGTACAGTAAATGGTAAACTTGGT-CAACTTAGAGCACTATGTGCAATGAGTACACTAAGTAATAATATGAGTAATAAGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     817504 161 -    863181 ACTAAATACACTAAGTGTTATATTAAGTACACTAGGTACACTAAGTGGTAAACTTGATCAACTTAGAGCACCAAGTGCACTAAGTACAGTAAATGGTAAACTTGGT-CAACTTAGAGCACTATGTGCAATAAGTACACTAAGTAATAATATGAGTAATAAGT
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29996176 108 -  71996105 ACTAAATACAC----TGTTATACTAAATACACT-GGTACACTAAG------------------------------------------------TGGTAAACCTGGT-CAACTTAGAGCACTATGTGCAATAAATACACTAAGTAATAATATGAGTAATAAGT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     614167 109 -   1829203 ACTAAATACAC----TGTTATATTAAGTACACTAGGTACACTAAGTGGTAAACTTGGT-------------------------------------------------CAACTTAGAGCACTATGTGCACTGAGTACACTAAGTAATAATATGAGTAATAAGT
i colAng1.NW_012115577v1   C 0 C 0
e otoGar3.GL873550           595963 167 +  18854210 I
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e cebCap1.NW_016107755v1    1244386 21452 -   1771730 T
e calJac3.chr4             30813735   0 + 171630274 C
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=456106.000000
s hg38.chr6_GL000254v2_alt  1807775 74 +   4827813 GGTACACTAAGCTGAAACCGCAAACCGCAGCC--ATGGCAGAGGAACCTCAGCTTAAATAGTGTGGAGCGGCCACT
s panTro5.chr6             30653918 74 + 175400573 GGTACACGAAGCTGAAACCGCAAACCGCAGCC--ATGGCAGAGGAACCTCAGCTTAAATAGTGTGGAGCGGCCACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31077820 74 + 173848474 GGTACACGAAGCTGAAACCGCAAACCGCAGCC--ATGGCAGAGGAACCTCAGCTTAAATAGTGTGGAGCGGCCACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     583209 74 +   2037526 GGTACACGAAGCTGAAACCGCAAACCGCAGCC--ACGGCAGAGGAACCTCAACTTAAATAGTGTGGAGCGGCCACT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75255729 74 + 122973662 GGTACACTAAGCTGAAACCGCAAACCGCAGCC--ATCGCAGAGGAACCTCAACTTAAATAGTGTGGAGCGGCCACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31153974 76 + 172585720 GGTACACTAAGCTGAAACCGCTAACCGCAGCCGAACCGCAGAGGAACCTCAACTTAAATAGTGTGGAGCGGCCGCT
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             30446100 76 - 170955103 GGTACACTAAGCTGAAACCGCTAACCGCAGCCAAACCGCAGAGGAACCTCAACTTAAATAGTGTGGAGCGGCCGCT
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     700174 76 +   1495729 GGTACACTAAGCTGAAACCGCTAACCGCAGCCTAACCGCAGAGGAACCTCAACTTAAATAGTGTGGAGTGGCCGCT
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002535v1     817665 76 -    863181 GGTACACTAAGCTGAAACCGCTAACCGCAGCCGAACGGCAGAGGAACGTTAACTTAAATAGTGTGGAGCGGCCGCT
i cerAty1.NW_012002535v1   C 0 I 1
s chlSab2.chr17            29996284 76 -  71996105 GGTACACTAAGCTGAAACCGCTAACCGCAGCCGAACGGCAGAGGAACCTCAACTTAAATAGTGTGGAGCTGCCGCT
i chlSab2.chr17            C 0 I 1
s colAng1.NW_012115577v1     614276 76 -   1829203 GGTACACTAAGCTGAAACCGCTAACCGCAGCCGAACCGCAGAAGAACCTCAACTTAAATAGTGTGGAGCGGCCGCC
i colAng1.NW_012115577v1   C 0 I 1
s calJac3.chr4             30813735 74 + 171630274 GGTACTCTAAGCTGAAACGGCAGACTGCAGCC--ATGGCAGAGAAACTGCCGCTTAAATAGTGCAGAGCTGCCACT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1222934 74 -   1771730 GGTACACGAAGCTGAAACCGCAAACCGCAGCC--ATGGCAGAGAAACCTCAGCTTAAATAGTGCAGAGCTGCCACT
i cebCap1.NW_016107755v1   T 21452 I 21505
e otoGar3.GL873550           595963 167 +  18854210 I
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=191363.000000
s hg38.chr6_GL000254v2_alt  1807849 57 +   4827813 -GGTTTCCGCGGCTCGTAGTCGCGCCCGCGAGGAAACGCCAGGGAGGCTTC-----CTGCCCC----------------
s panTro5.chr6             30653992 57 + 175400573 -GGTTTCCGCGGCTCGTAGTCGCGCCCGCGAGGAAGCGACCGGGAGGCTTC-----CTGCCCC----------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31077894 57 + 173848474 -GGTTTCCGCGGCTCGTAGTCGCTCCCGCGAGGAAGCGACCGGGAGGCTTC-----CTGCCCC----------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     583283 57 +   2037526 -GGTTTCCGCGGCTCGTAGTCGCGCCCGCGAGAAAGCACCCGGGAGGCTTC-----CTGCCCC----------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75255803 57 + 122973662 -GGTTTCAGCGGCTCGTAGTCGCCCCCGCGAGGAAGCGCCCGGGAGGCTTC-----CTGCCCC----------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31154051 50 + 172585720 -GGTTTCCGCTGCTCCTAGTCGCCCCCAAGAGGAAGCGCCGGTGAGGCTTT----------------------------
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30446177 50 - 170955103 -GGTTTCCGCTGCTCCTAGTCGCCCCCAAGAGGAAGCGCCGGTGAGGCTTT----------------------------
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     700251 62 +   1495729 -GGTTTCCGCTGCTCCTAGTCGCCCCCAAGAGGAAGCGCCGGTGAGGCTTTAGCAGCTGCCCG----------------
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002535v1     817742 50 -    863181 -GGTTTCCGCTGCTCCTAGTCGTCCCCAAGAGGAAGCGCCGGTGAGGCTTT----------------------------
i cerAty1.NW_012002535v1   I 1 C 0
s chlSab2.chr17            29996361 50 -  71996105 -GGTTTCCGCTGCTCCTAGTCGTCCCCAAGAAGAAGCGCCGGTGAGGCTTT----------------------------
i chlSab2.chr17            I 1 C 0
s colAng1.NW_012115577v1     614353 62 -   1829203 -GGTTTCCGCTGCTCCTAGTCGCCCCCAAGAGGAAGCGCCGGTGAGGCTTTAGCAGCTGCCGG----------------
i colAng1.NW_012115577v1   I 1 C 0
s calJac3.chr4             30813809 68 + 171630274 AGATGTCCCAGGCTTGTAGTC--------GAGGAAA---CCGCGAGGCTGTAGCGGCTGCTTGATCCGAGCGCGCTCCC
i calJac3.chr4             C 0 C 0
e otoGar3.GL873550           595963 167 +  18854210 I
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e cebCap1.NW_016107755v1    1223008 21505 -   1771730 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=301042.000000
s hg38.chr6_GL000254v2_alt  1807906 59 +   4827813 GCCC-AGCGGTGGCCCAGGGCACAGGGAACCACGGCTGCTTCTCTCCGA------GGTTTGTGGCC
s panTro5.chr6             30654049 52 + 175400573 GCCC-AGCGGTGGCCCAGGGCGCAGGGAACCAGGGCTGCTTCTCTCCGA-------------AGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31077951 52 + 173848474 GCCC-AGCGGTGGCCCAGGGCGCAGGGAACCAGGGCTGCTTCTCTCCGA-------------AGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     583340 52 +   2037526 GCCC-AGCGGTGGCCCAGGGCGCAGGGAACCAGGGCTGCTTCTCTCCGA-------------AGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75255860 58 + 122973662 GCCC-AGCGGTGGCCCAGGGCTCAGGGAACCAGGGCC-CTTCTCTCCGA------GGTTTGTGGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31154101 61 + 172585720 -----AGCAGTGGCCCCGGGCTCAGGGAACCAGGGCTGCTTCTCTCCGAGGTTCAGGTTCGCGGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30446227 61 - 170955103 -----AGCAGTGGCCCCGGGCTCAGGGAACCAGGGCTGCTTCTCTCCGAGGTTCAGGTTCGCGGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     700313 65 +   1495729 G-CCCAGCAGTGGCCCCGGGCTCAGGGAACCAGGGCTGCTTCTCTCCGAAGTTCAGGTTCGCGGCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     817792 61 -    863181 -----AGCAGTGGCCCCGGGCTCAGGGAACCAGGGCTGCTTCTCTCCGAGGTTCAGGTTCACGGCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29996411 61 -  71996105 -----AGCAGTGGCCCCGGGCTCAGGGAACCAGGGCTGCTTCTCTCCGAGGTTCAGGTTCGCGGCC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     614415 66 -   1829203 GCCCCAGCAGTGGCCCCGGGCTCAGGGAACCAGGGCTGCTTCTCTCCGAGGTTCAGGTTCCCGGCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30813877 58 + 171630274 GCCC-AGCGGTGG-CCCGGGCTCAGGGAACCGGGGCTGCTTCTCTTCGG------GGTTCGCGGCC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1244513 59 -   1771730 GCCC-AGCGGAGGACCCGGGCTCCGGGAACCGGGGCTGCTTCTCTCCGG------GGCTCGCGGCC
i cebCap1.NW_016107755v1   I 21505 C 0
e otoGar3.GL873550           595963 167 +  18854210 I
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=823070.000000
s hg38.chr6_GL000254v2_alt  1807965 125 +   4827813 TGAGAAACTCTCCGCTGCGAATCTGGGCTGGCCTCTCCGGGAAGCCTTGAAACTCAAC--TCCCGGGTGGGCCAGGAAGGCTGCCCGACTTGGGCA-GCGCCGGCCGGAGCCTTCTTCAAAGCCGAGC
s panTro5.chr6             30654101 125 + 175400573 TGAGAAACTCTCCGCTGCCAATCTGGGCTGGCCTCTCCGGGAAGCCTTGAAACTCAAC--TCCCGGGTGGGCCAGGAAGGCTGCCCGAGTTGGGCA-GCGCCGGCCGGAGCCTTCTTCAAAGCCGAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31078003 125 + 173848474 TGAGAAACTCTCCGCTGCGAATCTGGGCTGGCCTCTCCGGGAAGCCTTGAAACTCAAC--TCCTGGGTGGGCCAGGAAGGCTGCCCGAGTTGGGCA-GCGCCGGCCGGAGCCTTCTTCAAAGCCGAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     583392 125 +   2037526 TGAGAAACTCTCCGCTGCGAATCTGGGCTGGCCTCTTCGGGAAGCCTTGAAACTCAAC--TCCCGGGTGGGCCAGGAAGGCTGCCCGATTTGGGCA-GCGCCGGCCGGAGCCTTCTTCAAAGCCGAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75255918 125 + 122973662 TGAGAAACTCTCCGCTCCGAATCTGGGCTGGCCTCTCCGGAAAGCCTTGAAACTCAAC--TCCCGGGTGGGCCAGGAAGGCTGCCCGAGTTGGGAA-GCGCCGGCCGGAGCCTTCTTCAAAGCCGAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31154162 125 + 172585720 TTAGAAACCCTCCGCTCCGAATCTGGGCTGGCCTATCCGGGAAGCCTTGAAACTCAAC--TCCCGGGTGGGCCAGGAAGGCTGCCCGAGTTGGGTA-GCGCCGGCCGACGCCTTCCTCAGAGCCGAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30446288 125 - 170955103 TTAGAAACCCTCCGCTCCGAATCTGGGCTGGCCTATCCGGGAAGCCTTGAAACTCAAC--TCCCGGGTGGGCCAGGAAGGCTGCCCCAGTTGGGCA-GCGCCGGCCGACGCCTTCCTCAGAGCCGAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     700378 125 +   1495729 TTAGAAACCCTCCGCTCCGAATCTGGGCTGGCCTATCCGGGAAGCCTTGAAACTCAAC--TCCCGGGTGGGCCAGGAAGGCTGCCCGAGTTGGGCA-GCGCCGGCCGGCGCCTTCCTCAGAGCCGAGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     817853 125 -    863181 TTACAAACCCTCCGCTCCGAATCTGGGCTGGCCTATCCGGGAAGCCTTGAAACTCAAC--TCCCGGGTGGGCCAGGAAGGCTGCCCGAGTTGGGCA-GCGCCGGCCGACGCCTTCCTCAGAGCCGAAC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29996472 125 -  71996105 TTACAAACCCTCCGCTCCGACTCTGGACTGGCCTATCCGGGAAGCCTTGAAACTCAAC--TCCCGGGTGGACCAGGAAGGCTGCCCGAGTTGGGCA-GCGCCGGCCAGCGCCTTCCTCAGAGCCGAGC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     614481 124 -   1829203 TTAGAAAGCCTCCGCTCCGAATCTGGGCTGGCCTATCCGGGAAGCCTTGAAACTCAAC--TCCC-GGTGGGCCAGGAAGGCTGCCCGAGTTGGGCA-GCGCCGGCCGGCGCCTTCCTCAGAGCCGAGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30813935 125 + 171630274 TGAGAAACCCTCCGCTCCGAATCCCGGCCGGCCTCTCCGGGAAGCCTTGAAACTCAGC--TTCAGGGTGGGCCAGGAAGGCTGTCCGAGTTGGGCA-GCCCCGGCCAGGGCCTCGCCCGAAGCTGAGC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1244572 125 -   1771730 TGAGGAACCCTCCGCTCCGAATCCGGGCTGGCCTCCCCGGGAAGCCTTGGAACTCAGC--TCCAGGGTGGGCCAGGAAGGCTGTCCGAGTTGGGCA-GCGCCGGCCGGGGTCTCCCTCAGAGCCGAGC
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           596130 125 +  18854210 CAAGAAACCCTGCCCCACCAACCT---CCACCCCTATGATGAAGCTGTGAAACTCAGTGAGACCAGGTTGTAAAGAAAGGCATCCCCCCTTAGGTACGACTTGATGGGTTTCTCCCCCAGAACCAGCC
i otoGar3.GL873550         I 167 C 0
e aotNan1.NW_018496901v1     453878 21609 -    486031 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=9889894.000000
s hg38.chr6_GL000254v2_alt  1808090 1323 +   4827813 TGTTCGCCGCCC-TCGAGGCCCAGGCGAGCCTGGAGG--AGGGACCGGGTGCGCTCAGATGGGGCCCTTGGTGACTGGCGACCCCATGAGCACCCACCCTCCAGCCTGG------GGCGGGATGGCCCAATCGGGCGCTGTGGGGGTCC--GTTTGGAAACCGCTCTCTGCTTTGAGGATACGCGGGGAGCTTCCCT--------GGAAGCTGTG----AAGAGGGGCAGACACGAGGCCTCTGGCCAGCCGCGCCTCGGGTCCAGGCCTCCCTGTGTCCACATCTGGTCTCCCGGCTTTTCACAACAGTGACCTTGACAGCGCCCAGAGTCCGCTGCTTCCGTCCAGTCCGCT-CTTCCCCTAC-GTGGCCAAGAGGACGCAGCACTGGCGGCTTCAGGAGGTGGCTGTGAGCGCGGGGCTGGGGCCAAGAGCAGAGGACCAGAGAGG----AGTCTCCAAGCCACCACCGGCC--------CCGTCACCGGCTACCGGC-TAGGTCAGG--CCCCAGATTCGGGTTTGCCCAGCGGGCGCTCGGCGTCCACGCTCCCTCTC-C----ACCTTCTTGCCTCTCT-AAGGAGGACCTGGCCCACTAGGAAGCCCGGG-GCGTTCTGTGAACTGGGTGTTCAAACACGGTGTGT-GGGGAAGGGGCCAATTGAGATTAGACGTGAAAAACCGGGAACCTGGGGACC-GCAGGGTTGGGGCCCAGGAGGGGCCC-GAAGCTTCCA------------TCTAAGACAGGTGACTAAGTGAGGGGCACAGGTGCAACAGAAAGAAAGACTGATTTGCAATTGACTTGTAG-GTGTAATCGGTTTTAGTCCCTATTTGACCACCAGAGGTCTGCAGCTCTATCCTTGGTGAGTTCTGAAGGCCCCTGGGGAGAGCTGAGCCCAAGAGACTTTTTAATTCCACAGAAGAACTTCGCCTGAGGCAGGTCTC--CTCTGTGCCCAGGGAAGGAAGGCTGGACGTGATG------GTTTCTG-AAAAAAGTTACAC-------------------AGAGAAA----AGGTCAAGTCCATTTTTGCTATCCTGTACTGAACACAG---ATCAATTAACTGGTCCCA---GGATTGATAGCAACGGGCCTATAACTGGTCTCCTGGTTCCTATCCAGCCCTT-CCCCCATAAAGGCAGAATCCTGTCCTCTTGGAACAGTG--AATCCCCAGCAGAGGACCTCA----------GCTCCCAAGCTC-C-ATTCAGCCTGGGCTCCCTGGAACCTGCTACCCTGCCCA--GGAGCTGTCAACACCTGGAGTGCAGTGCAGGAAGAATGCAGGGGCGCTTGATGG------GGAGGTGAGTGAGTGCAGATGGGGTTCCTGGAACTCCTTGGGCCCTT----------GGGGTAGCTCCCAC------------TCAG-GCTGTCCTGCA--GGTCCTCACAAGG
s panTro5.chr6             30654226 1330 + 175400573 TGCTCGCCGCCC-TCGAGGCCCAGGCGAGCCTGGAGG--AGAGACCGGGTGCGCTCAGGTGGGGCCCTTGGTGACTGGCGACCCCATGAGCACCCACCCTCCAGCCTGG------GGCGGGATGGCCCAATTGGGCGCTGTGGGGGTCC--GTTTGGAACCCACTCTCTGCTTTGAGGATACGCGGGGAGCTTCCCTGGGAGG-AGGAAGCTGTG----AAGAGGGGCAGACACGAGGCCTCTGGCCAGCCGCGCCTCGGGTCCAGGCCTCCCTGTGTCCACATCTGGTCTCCCGGCTTTTCACAACAGTGACCTTGACAGCGCCCAGAGTCCGCTGCTTCCGTCCAGTCCGCT-CTTCCCCTGC-GTGGCCAAGAGGGCGCAGCACTGGCGGCTTCAGGAGGTGGCTGTGAGCGCGGGGCTGGGGCCAAGAGCAGAGGACCAGAGAGG----AGTCTCCAAGCCACCACCGGCC--------CCGTCACCGGCTACCGGC-TAGGTCAGG--CCCCAGATTCGGGTTTGCCCAGCAGGCGCTCGGCGTCCACGCTCCCTCTC-C----ACTTTCTTGCCTCTCT-AAGGAGGACCTGGCCCACTAGGAAGCCCGGG-GCGTTCTGTGAACTGGGTGGTCAAACATGGTGTGT-GGGGAAGGGGTCAACTGAGATTAGACGTGAAAAACCGGGAACCTGGGGACC-GCAGGGTTGGGGCCCAGGAGGGGCCC-GAAGCTTCCA------------TCTAAGACAGGTGACTAAGTGAGGGGCACAGGTGCAACAGGAAAAAAGATTTATTTGCAATTGACTTGTAG-GTGTAATCGGTTTTAGTCCCTATTTGACCACCAGAGGTCTGCAGCTCTATCCTTGGTGAGTTCTGAAGGCCCCTGGGGAGAGCTGAGCCCAAGAGACTTTTTAATTCCACAGAGGAACTTCGCCTGAGGCAGGTCTC--CTCTGTGCCCAGGGAAGGAAGGCTGGACATGATG------GTTTCTG-AAAAAAGTTACAC-------------------AGAGAAA----AGGTCAAGTCCATTTTTGCTATCCTGTACTGAACACAG---ATCAATTAACTGGTCCCA---GGATTGATAGCAACGGGCCTGTAACTGGTCTCCTGGTTCCTATCCAGCCCTT-CCCCCATAAAGGCAGAATCCTGTCCTCTTGGAACAGTG--AATCCCCAGCAGAGGACCTCA----------GCTCTCAAGCTC-C-ATTCAGCCTGGGCTCCCTGGAACCTGCTACCCTGCCCA--GGAGCTGTCAACACCTGGAGTGCAGTGCAGGAAGAATGCAGGGGCGCTTGGTGG------GGAGGTGAGTGAGTGCAGATGGGGTTCCTGGAACTCCTTGGGCCCTT----------GGGGTAGCTCCCAC------------TCAG-GCTGTCCTGCA--GGTCCTCACAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31078128 1330 + 173848474 TGCTCGCCGCCC-TCGAGGCCCAGGCGAGCCTGGAGG--AGAGACCGGGTGCGCTCAGGTGGGGCCCTTGGTGACTGGCGACCCCATGAGCACCCACCCTCCAGCCTGG------GGCGGGATGGCCCAATTGGGCGCTGTGGGAGTCC--GTTTGGAAACCACTCTCTGCTTTGAGGATACGCGGGGAGCTTCCCTGGGAGG-AGGAAGCTGTG----AAGAGGGGCAGACACGAGGCCTCTGGCCAGCCGCGCCTCGGGTCCAGGCCTCCCTGTGTCCACATCTGGTCTCCCGGCTTTTCACAACAGTGACCTTGACAGCGCCCAGAGTCCGCTGCTTCCGTCCAGTCCGCT-CTTCCCCTGC-GTGGCCAAGACGGCGCAGCACTGGCGTCTTCAGGAGATGGCTGTGAGCGCGGGGCTGGGGCCAAGAGCAGAGGACCAGAGAGG----AGTCTCCAAGCCACCACCGGCC--------CCGTCACCGGCTACCGGC-TAGGTCAGG--CCCCAGATTCGGGTTTGCCCAGCAGGCGCTCGGCGACCACGCTCCCTCTC-C----ACTTTCTTGCCTCTCT-AAGGAGGACCTGGCCCACTAGGAAGCCCGGG-GCGTTCTGTGAACTGGGTGGTCAAACATGGTGTGT-GGGGAAGGGGTCAATTGAGATTAGACGTGAAAAACCGGGAACCTGGGGACC-GCAGGGTTGGGGCCCAGGAGGGGCCC-GAAGCTTCCA------------TCTAAGACAGGTGACTAAGTGAGGGGCACAGGTGCAACAGGAAAAAAGATTGATTTGCAATTGACTTGTAG-GTGTAATCGGTTTTAGTGCCTATTTGACCACCAGAGGTCTGCAGCTCTATCCTTGGTGAGTTCTGAAGGCCCCTGGGGAGAGCTGAGCCCAAGAGACTTTTTAATTCCACAGAGGAACTTCGCCTGAGGCAGGTCTC--CTCTGTGCCCAGGGAAGGAAGGCTGGACATGATG------GTTTCTG-AAAAAAGTTACAC-------------------AGAGAAA----AGGTCAAGTCCATTTTTGCTATCCTGTACTGAACACAG---ATCAATTAACTGGTCCCA---GGATTGATAGCAACGGGCCTGTAACTGGTCTCCTGGTTCCTATCCAGCCCTT-CCCCCATAAAGGCAGAATCCTGTCCTGTTGGAACAGTG--AATCCCCAGCAGAGGACCTCA----------GCTCTCAAGCTC-C-ATTCAGCCTGGGCTCCCTGGAAGCTGCTACCCTGCCCA--GGAGCTGTCAACACCTGGAGTGCAGTGCAGGAAGAATGCAGGGGCGCTTGGTGG------GGAGGTGAGTGAGTGCAGATGGGGTTCCTGGAACTCCTTGGGCCCTT----------GGGGTAGCTCCCAC------------TCAG-GCTGTCCTGCA--GGTCCTCACAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     583517 1329 +   2037526 TGCTCGCCGCCC-TCGAGGCCCAGGCGAGCCTGGAGG--AGAGGCCGGGTGCGCTCAGGTGGGGCTCTTGGTGACTGGCGACCCCATTAGCACCCACCCTCCAGCCTGG------GGCGGGATGGCCCAATTGGGCGCTGTGGGGGTCC--GTTTGGAAACCACTCTCTGCTTTGAGGATACGCGGGGAGCTTCCCTGGGAGG-AGGAAGCTGTG----AAGAGGGGCAGACACGAGGCCTCTGGCCAGCCGCGCCTCGGGTCCAGGCCTCCCTGTATCCACATCTGGTCTCCCGGCTTTTCACAACAGTGACCTTGACAGCGCCCAGAGTCCGCTGCTTCCGTCCAGTCCGCT-CTTCTCCTGC-GTGGCCAAGAGGGCGCAGCACTGGCGGCTTCAGGAGGTGGCTGTGAGCGCGGGGCTGGGGCCAAGAGCAGACGACCAGAGAGG----AGTCTCCAAGCCACCACCGGCC--------CCGTCACTGGCTACCGGC-TAGGTCAGG--CCCCAGATTCGGGTTTGCCCAGCAGGCGCTCGGCGTCCACTCTCCCTCTC-C----ACTTTCTTGCCTCTCT-AAGGAGGACCTGGCCCCCTAGGAAGCCCGGG-GCGTTCTGTGAACTGGGTGGTCAAACATGGTGTGT-GGGGAAGGGGTCAATTGAGATTAGACGTGAAAAACCGGGAACCTGGGGACC-GCAGGGTTGGGGCCCAGGAGGGGCCC-GAAGCTTCCA------------TCTAAGACAGGTGACTAAGTGAGGGGCACAGGTGCAACAGGAAAAAAGATTGATTTGCAATTGACTTGTAG-GTGTAATCGGTTTCAGTCCCTATTTGACCACCAGAGGTCTGCAGCTCTATCCTTGGTGAGTTCTGAAGGCCCCT-GGGAGAGCTGAGCCCAAGAGACTTCTTAATTCCACAGAGGAACTTCGCCTGAGGCAGGTCTC--CTCTGTGCCCAGGGAAGGAAGGCTGGACGTGATG------GTTTCTG-AAAAAAGTTACAC-------------------AGAGAAA----AGGTCAAGTCCATTTTTGCTATCCTGTACTGAACACAG---ATCAATTAACTGGTCCCA---GGATTGATAGCAACGGGCCTGTAACTGGTCTCCTGGTTCCTATCCAGCCCTT-CCCCCATAAAGTCAGAATCCTGTCCTCTTGGAACAGTG--AATCCCCAGCAGAGGACCTCA----------GCTCTCAAGCTC-C-ATTCAGCCTGGGCTCCCTGGAACCTGCTACCCTGCCCA--GGAGCTGTCAACACCTGGAGTGCAGTGCAGGAAGAATGCAGGGGCGCTTGGTGG------GGAGGTGAGTGAGTGCAGATGGGGTTCCTGGAACTCCTTGGGCCCTT----------GGGGTAGCTCCCAC------------TCAG-GCTGTCCTGCA--GGTCCTCACAAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75256043 1340 + 122973662 TGCTCGCCGCCT-TCGAGGCCCAGGCGAGCATGGAGG--AGAGACCGGGTCCGCTCAGTGGGGGCCCTTGGTGCCTGGCGACCCCATGAGCCCCCACCCTCCATTCTGG------GCCGGGATGGCCCAATCGGACGCTGTGGGGGTCC--GTTTGGAAACCACTCTCTGCTTTGAGGATACGCGGGGAGCTTCCCTGGGAGG-AGGAAGCTGTG----AAGAGGGGCAGACACGAGGCCTCTGGCCAGCCGTTCCTCGGGTCCAGGCCTCCCTGTGTCCACATCTGGTCTCCCGGCTTTTCACAGCAGTGACCTTGACAGCGCCCAGAGTCCGCTGCTTCCGTCGGGTCCGCT-CTTCCCCTGA-GTGGCAGAGAGGGCGCAGCACTGGTGGCTTCAAGAGGTGGCTGTGAGCGCGGGGTTGGGGCCGAGAGCATAGGACCAGAGAGG----AGTCGCCAAGccagcaccggtcccggggcaccgtcaccggctaccggc-taGGTCAGG--CCCCAGATTCGGGTTTGCCCAGCAGGCGCTCGGCGTCCACGCTCCCTCAC-C----ACCTTCCTGCC-CTCT-AAGGAGGACCTGGCCCATTAGGAAGCCCCGG-GCGTTCTGTGGACTGGGTGGTCAAAAATGGTGTGTGGGGGAGGGGGTCAATTGAGATTAGACCTGAAAAACCGGGAACCTGGGGACCAGCAGGGTTGGGGCCCAGGAGGGGACC-GAAGCTTCCA------------TCTAAGACAGGTGACTAAGTGAGGGGCAGAGCCGCAACAGGAAGAAAGATTGATTTGTAATTGACTTGTAG-GTGTGATCGGTTTTAGTCCCTATCTGACCACCAGAGGTCTGCAGCTCTATCCTTGGTGACTTCTGAAGGCCCCTGGGGAGAGCTGAGCCCAAGACACTTTTTAATTCCACAGACGAACTTCCCCTGAGGCGGGTCTC--CTCTGTGCCCAGGGAAGGAAGGCTAGACGTGATG------GTTTCTGAAAAAAAGTTACAC-------------------AGAGAAA----AGGTCAAGTCCATTTTTGCTATCCTGTACTGAACACAG---ATCAATTAACTGGTCCCA---GGAGTGATGGCAACAGGCCTATAACTGGTCTCCTAGTTCCTATCCAGCCCTT-CCCCCATAAAGTCAGAATCCTGTCCTCTTGGAGCAGTG--AATCCCCAGCAGAGGACCTCA----------GCTCCCAAGCTC-C-ATTCAGCCTGGGCTGCCTGGAACCGGCTACCCTGCCCA--GGAGCTGTCAACACCTGGAGCGCAGTGCAGGAAGAATGCAGGGGCGCTTGGCGG------GGAGGTGAGTGAGTGCAGATGGGGTTCCTGGAACTCCTTGAGCCCTT----------GGGTTAGCTCCCAC------------TCAG-GCTGTCATGCT--TGTCCTCACAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31154287 1326 + 172585720 TGCTCGCTGCCC-TCGAGGCCCAGCTGAGCCTGGAGG--AGAGACCGGGTCCGCTCAGGTGGGG-CCTTGGTGCCTGGCGACCCCATGAGCCCCCACCCTCCAGCCTGG------GGCGGGATGGCCCAATCAGGCGCTGTGGGGGCCC--GTTTGGAAACCACTCTCTGCTTTGAGGACACACGTGGGGCTTCCCTGGG----AGGAGGCAGTG----AAGAGGGGCAGACACGAGGCCTCTGGCCAGCCGCGCCTCGGGTCCAGGCCTCCCTGTGTCCACATCTGGTCTCCCGGCTTTTCACAACAGTGACCTTGACAGCGCCCAGAGTCCGCTGCTTCCGTCCAGTCCGCT-CTTCCCCTGC-GTGGCCGAGATGGCGCAGCACTGGTGGCTTCAGGAGGTGGCTGTGAGCGCGGGGCTGGGGCCGAGAGCATAGGACCAGAGAGG----AGTCGCCAAGCCACCACTGGCCCAGGGTCACCGTCACCAGCTGCCGGC-TAGGTCAAG--CCCCAGATTCGGGTTTGCCCAGCAGGCTCTGGGCATCCATGCTCCCTCTC-C----ACCTCCCTGCCTCTCT-AAGGAGAACCTAGCCCATTAGAAAGCCCAGG-GCGTTCTGTGAACTGGTTGGTCAAAAATGGTGTGTGGGGGAGGGGGTCAATTGAGATCAGACGTGAAAAACGGGGAACCTGGGGACC-ATAGGGTTGGGGCCCAGGAGGGGGTC-GAAGCTTCTA------------TTTCAGACAGGTGACTAAGTGAGGGGCACTGCCGCAACAGGAAGAAAGATTGATTTGCAATTGATTTGCAG-GTGTGATCAGTTTTAGTTCCTATTTGACAACCAGAAGTCTGCAGCCCTATCCTTGGTGAGTTCTGAAGGCCTCTGGGGACAGCTGAGCCCAAAAGACTTTTTAATTCCACAGA-GAACTTCCCCTGAGGCAGGTCTC--CTCTGTGCCCAGGGAAGGAAGGCTGGGCATGATG------GTTTCTG-AAAAAAGTTACAC-------------------AGAGAAA----AGGCCAAGTTCATTTGTGCTACCCTGAACTGAACACAG---ATCAATTAAGTGGTCCCA---GGATTGATGGCAACAGGCCTATAACTGGTCTCCTAGTTCCTATCCAGTCCTT-CCCCCATAAACTCAGAACCCTGTCCTCTTGGAACAGTG--AATCCCCAGCAGAGGACCTCA----------GCTCCCAAGCTC-C-ATTCAACCTGGGCTGCCTGGAACCCGCTACCCTGCCCA--GGAGCTGTTAACACCTGGAGCTCGGTGCAGGAAGAATGCAGGGGCGCTTGGTGG------GGAGGTGAGTGAGTGCAGA-GAGGTTCCAGGAATTCCTTGAGCCCTT----------GCAGTAGCTCCCAC------------TCAG-GCTGTCCTGCA--AGTCCT-------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30446413 1336 - 170955103 TGCTCGCTGCCC-TCGAGGCCCAGCCGAGCCTGGAGG--AGAGACCGGGTCCGCTCAGGTGGGG-CCTTGGTGCCTGGCGACCCCATGAGCACCCACCCTCCAGCCTGG------GGCGGGATGGCCCAATCAGGCGCTGTGGGGGTCC--GTTTGGAAACCACTCTCTGCTTTGAGGACACACTCGGGGCTTCCCTGGGAGA-AGGAGGCAGTG----AAGAGGGGCAGACACGAGGCCTCTGGCCAGCCGCGCCTCGGGTCCAGGCCTCCCTGTGTCCACATCTGGTCTCCCGGCTTTTCACAACAGTGACCTTGACAGCGCCCAGAGTCCGCTGCTTCCGTCCAGTCCGCT-CTTCCCCTGC-GTGGCCGAGAGGGCGCAGCACTGGTGGCTTCAGGAGGTGGCTGTGAGCGCGGGGCTGGGGCCGAGAGCATAGGACCAGAGAGG----AGTCGCCAAGCCACCACTGGCCCAGGGTCACCGTCACCAGCTGCTGGC-TAGGTCAAG--CCCCAGATTCGGGTTTGCCCAGCAGGCGCTGGGCGTCCATGCTCCCTCTC-C----ACCTTCCTGCCTCTCT-AAGGAGAACCTAGCCCATTAGAAAGCCCAGG-GCGTTCTATGGACTGGTTGGTCAAAAATGGTGTGTGGGGGAGGGGGTCAATTGAGATCAGACGTGAAAAACGGGGAACCTGGGGACC-ATAGGGTTGGGGCCCAGGAGGGGACC-GAAGCTTCTA------------TTTAAGACAGGTGACTAAGTGAGGGGCACTGCCGCAACAGGAAGAAAGATTGATTTGCAATTGATTTGCAG-GCGTGATCAGTTTTAGTCCCTATTTGACAACCAGAAGTCTGCAGCTCTATCCTTGGTGAGTTCTGAAGGCCTCTGGGGACAGCTGAGCCCAAAAGACTTTTTAATTCCACAGA-GAACTTCCCCTGAGGCAGGTCTC--CTCTGTGCCCAGGGAAGGAAGGCTGGGCATGATG------GTTTCTG-AAAAAAGTTACAC-------------------AGAGAAA----AGGCCAAGTTCATTTGTGCTACCCTGAACTGAACACAG---ATCAATTAACTGGTCCCA---GGATTGATGGCAACAGGCCTATAACTGGTCTCCTAGTTCCTATCCAGTCCTT-CCCCCATAAACTCAGAACCCTGTCCTCTTGGAACAGTG--AATCCCCGGCAGAGGACCTCA----------GCTCCCAAGCTC-C-ATTCAACCTGGGCTGCCTGGAACCCGCTACCCTGCCCA--GGAGCTGTTAACACCTGGAGCTCGGTGCAGGAAGAATGCAGGGGCCCTTGGTGG------GGAAGTGAGTGAGTGCAGA-GGGGTTCCGGGAACTCCTTGAGCCCTT----------GCAGTAGCTCCCAC------------TCAG-GCTGTCCTGCA--AGTCCTCACAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     700503 1336 +   1495729 TGCTCGCTGCCC-TTGAGGCCCAGCCGAGCCTGGAGG--AGAGACCGGGTCCGCTCAGGTGGGG-CCTTGGTGCCTGGCGACCCCATGAGCACCCACCCTCCAGCCTGG------GGCGGGATGGCCCAATCAGGCGCTGTGGGGGTCC--GTTTGGAAACCACTCTCTGCTTTGAGGACACACTCGGGGCTTCCCTGGGAGA-AGGAGGCAGTG----AAGAGGGGCAGACACGAGGCCTCTGGCCAGCCGCGCCTCGGGTCCAGGCCTCCCTGTGTCCACATCTGGTCTCCCGGCTTTTCACAACAGTGACCTTGACAGCGCCCAGAGTCCGCTGCTTGCGTCCAGTCCGCT-CTTCCCCTGC-GTGGCCGAGATGGCGCAGCACTGGTGGCTTCAGGAGGTGGCTGTGAGCGCGGGGCTGGGGCCGAGAGCATAGGACCAGAGAGG----AGTCGCCAAGCCACCACTGGCCCAGGGTCACCGTCACCAGCTGCTGGC-TAGGTCAAG--CCCCAGATTCGGGTTTGCCCAGCAGGCGCTGGGCGTCCATGCTCCCTCTC-C----ACCTTCCTGCCTCTCT-AAGGAGAACCTAGCCCATTAGAAAGCCCAGG-GCGTTCTATGGACTGGTTGGTCAAAAATGGTGTGTGGGGGAGGGGGTCAATTGAGATCAGACGTGAAAAACGGGGAACCTGGTGACC-ATAGGGTTGGGGCCCAGGAGGGGACC-GAAGCTTCTA------------TTTAAGACAGGTGACTAAGTGAGGGGCACTGCCGCAACAGGAAGAAAGATTGATTTGCAATTGATTTGCAG-GCGTGATCAGTTTTAGTCCCTATTTGACAACCAGAAGTCTGCAGCTCTATCCTTGGTGAGTTCTGAAGGCCTCTGGGGACAGCTGAGCCCAAAAGACTTTTTAATTCCACAGA-GAACTTCCCCTGAGGCAGGTCTC--CTCTGTGCCTAGGGAAGGAAGGCTGGGCATGATG------GTTTCTG-AAAAAAGTTACAC-------------------AGAGAAA----AGGCCAAGTTCATTTGTGCTACCCTGAACTGAACACAG---ATCAATTAAGTGGTCCCA---GGATTGATGGCAACAGGCCTATAACTGGTCTCCTAGTTCCTATCCAGTCCTT-CCCCCATAAACTCAGAACCCTGTCCTCTTGGAATAGTG--AATCCCCGGCAGAGGACCTCA----------GCTCCCAAGCTC-C-ATTCAACCTGGGCTGCCTGGAACCCGCTACCCTGCCCA--GGAGCTGTTAACACCTGGAGCTCGGTGCAGGAAGAATGCAGGGGCCCTTGGTGG------GGAAGTGAGTGAGTGCAGA-GGGGTTCCGGGAACTCCTTGAGCCCTT----------GCAGTAGCTCCCAC------------TCAG-GCTGTCCTGCA--AGTCCTCACAAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     817978 1334 -    863181 TGCTCGCCGCCC-TCGAGGCCCAGCCGAGCCTGGAGG--AGAGACCGGGTCCGCTCAGGTGGGGCCCTTGGTGCCTGGCGACCCCATGAGCACCCACCCTCCAGCCTGG------GGCGGGATGGCCCAATCAGGCGCTGTGGGGGTCC--GTTTGGAAACCA--CTCTGCTTCGAGGACACACTCGGGGCTTCCCTGGGAGA-AGGAGGCAGTG----AAGAGGGGCAGACACGAGGCCTCTGGCCAGCCGCGCCTCGGGTCCAGGCCTCCCTGTGTCCACATCTGGTCTCCCGGCTTTTCACAACAGTGACCTTGACAGCGCC--GAGTCCGCTGCTTCCGTCCAGTCCGCT-CTTCCCCTGC-GTGGCCGAGAGGGCGCAGCACTGGTGGCTTCAGGAGGTGGCTGTGAGCGCGGGGCTGGGGCTGAGAGCATAGGACCAGAGAGA----AGTCGCCAAGCCACCACTGGCCCAGGGTCACCGTCACCAGCTGCCGGC-TAGGTCAAG--CCCCAGATTCGGGTTTGCCCAGCAGGCTCTGGGCATCCATGCTCCCTCTC-C----ACCTCCCTGCCTCTCT-AAGGAGAACCTAGCCCATTAGAAAGCCCAGG-GCGTTCTATGGACTGGTTGGTCAAAAATGGTGTGTGGGGGAGGGGGTCAATTGAGATCAGACGTGAAAAACGGGGAACCTGGGGACC-ATAGGGTTGGGGCCCAGGAGGGGGTC-GAAGCTTCTA------------TTTCAGACAGGTGACTAAGTGAGGGGCACTGCCGCAACAGGAAGAAAGATTGATTTGCAATTGATTTGCAG-GCGTGATCAGTTTTAGTTCCTATTTGACAACCAGAAGTCTGCAGCTCTATCCTTGGTGAGTTCTGAAGGCCTCTGGGGACAGCTGAGCCCAAAAGACTTTTTAATTCCACAGA-GAACTTCCACTGAGGCAGGTCTC--CTCTGTGCCCAGGGAAGGAAGGCTGGGCGTGATG------GTTTCTGAAAAAAAGTTACAC-------------------AGAGAAA----AGGCCAAGTTCATTTGTGCTACCCTGAACTGAACACAG---ATCAATTAACTGGTCCCA---GGATTGATGGCAACAGGCCTATAACTGGTCTCCTAGTTCCTATCCAGTCCTT-CCGCCATAAACTCAGAACCCTGTCCTCTTGGAACAGTG--AATCCCCAGCAGAGGACCTCA----------GCTCCCAAGCTC-C-ATTCAACCTGGGCTGCCTGGAACCCGCTACCCTGCCCA--GGAGCTGTTAACACCTGGAGCTCGGTGCAGGAAGAATGCAGGGGCACTTGGTGG------GGAAGTGAGTGAGTGCAGA-GGGGTTCCGGGAACTCCTTGAGCCCTT----------GCAGTAGCTCCCAC------------TCAG-GCTGTCCTGCA--AGTCCTCACAAGG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29996597 1321 -  71996105 TGCTCGCCGCCC-TCGAGGCCCAGCCGAGCCTGGAGG--AGAGACCGGGTCCACTCAGGTGGGGCCCTTGGTGCCTGGCGACCCCATGAGCACCCACCCTCCAGCCTGG------GGCGGGATGGCCCAATCAGGCGCTGTGAGGGTCC--GTTTGGAAACCACTTTCTGCTTTGAGGACACACGCGGGGCTTCCCTGGGAGA-AGGAGGCAGTG----AAAAGGGGCAGACACGAGGCCTCTGGCCAGCCGCGCCTCGGGTCCAGGCCTCCCTGTGTCCACATCTGGTCTCCCGGCTTTTCACAACAGTGACCTTGACAGCGCCCAGAGTCCGCTGCTTCTGTCCAGTCCGCT-CTTACCCTGC-GTGGCCCAGAGGGCGCAGCACTGGTGGCTTCAGGAGGTGGCTGTGAGCGCGGGGCTGGGGCCGAGAGCATAGGACCAGAGAGG----AGTCGCCAAGCCAccaccggccccggggcaccgtcaccggctaccggc-TAGGTCAAG--CCCCAGATTCGGGTTTGCCCAGCAGGCGCTGGGCGTCCATGCTCCCTCTC-C----ACCTCCCTGCCTCTCT-AAGGAGAACCTAGCCCATTAGAAAGCCC----------------CTGGTTGGTCAAAAATGGTGTGTAGGGGAGGGGGTCAATTGAGATCAGACGTGAAAAACGGGAAACCTGGGGACC-ATAGGGTTGGGGCCCAGGAGGGGGTC-GAAGCTTCTA------------TTTAAGACAGGTGACTAAGTGAGGGGCACTGCCGCAACAGGAAGAAAGATTGATTTGCAATTGATTTGCAG-GCGTGATCAGTTTTAGTTCCTATTTGACAACCAGAAGTCTGCAGCTCTATCCTTGGTGAGTTCTGAAGGCCTCTGGGGACAGCTGAGCCCAAAAGACTTTTTAATTCCACAGA-GAACTTCCCCTGAGGCAGGTCTC--CTCTGTGCCCAGGGAAGGAAGGCTGGGTGTGATG------GTTTCTG-AAAAAAGTTACAC-------------------AGAGAAA----AGGCCAAGTTCATTTGTGCTACCCTGAACTGAACACAG---ATCAATTAACTGGTCCCA---GGATTGATGGCAACAGGCCTATAACTGGTCTCCTAGTTCCTATCCAGTCCTT-CCCCCATAAACTCAGAACCCTGTCCTCTTGGAACAGTG--AATCCCCAGCAGAGGACCTCA----------GCTCCCAAGCTC-C-ATTCAACCTGGGCTGCCTGGAACCCGCTAGCCTGCCCA--GGAGCTGTCAACACCTGGAGCTCGGTGCAGGAAGAAGGCAGGGG-GCTTGGTGG------GGAGGTGAGTGAGTGCTGA-GGGGTTCTGGGAACTCCTTTGGCCCTT----------GGAGTAGCTCCCAC------------TCAG-GCTGTCCTGCA--AGTCCTCACAAGG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     614605 1341 -   1829203 TGCCCGCCGCCC-TCGAGGCCCAGCCGAGCCTGGAGG--AGAGACCGGGTCCGCTCAGGTGGGGCCCTTGGTGCCTGGCGACCCCATGAGCACCCACCCTCCAGCCTAG------GGCAGGATGGCCCAATTAGGCGCTGTGGGGGTCC--CTTTGGAAACCACTCTCTGCTTTAAGGACACACGTGGGGCTTCCCTGGGAGA-AGGAGGCAGTG----AAGAGGGGCAGACACCAGGCCTCTGGCCAGCCGCCCCTCGGGTCCAGGCCGCCCTGCGTCCACATCTGGTCTCCCGGCTTTTCACAACAGTGACCTTGACAGCGCCCAGAGTCCGCTGCTTCTGTCCAGTCCGCT-CTTCCCCTGC-GTGGCCGAGAGGGCGCATCACTGGTGGCTTCAGGAGGTGGCTGTGAGCGCGGGGCTGGGGCCGAGAGCATAGGACCAGAGAGGAGTCAGTCGCCAAGCCACCACCAGCCCTGGGGCACCCTCACCGGCTACCGGC-TGGGTCAGG--CCCCAGATTCAGGTTTGCCCAGCAGGCGCTCGGCGTCCATGCTCCCTCTC-C----ACCTCCCTGCCTCTCT-AAGGAGAACCTAGCCCATTAGAAAGCCCAGG-GCGTTCTGTGGACTGGTTGGTCAAAAATGGTGTGTGGGGAAGCGGGTCAACTGAGATCAGACGTGAAAAACGGGGAACCTGGGGACC-ATAGGGTTGGGGCCCAGGAGGGGACC-GAAGCTTCTA------------TTTAAGACAGGTGACTAAGTGAGGGGCACTGCCGCAACAGGAAGAAAGATTGATTTGCAATTGATTTGCAG-GCATGATCAGTTTTAGTCCCTATTTGACAACCAGAAGTCTGCAGCTCTATCCTTGGTGAGTTCTGAAGGCCTCTGGGGACAGCTGAGCCCAAAAGACTTTTTAATTCCACAGA-GAACTTCGCCTGAGGCAGGTCTC--CTCTGTGCCCAGGGAAGGAAGGCTAGGCGTGATG------GTTTCTG-AAAAAACTTACAC-------------------AGAGAAA----AGGCCAAGTTCATTTGTGCTACCCTGAACTGAACACAG---ATCAATTAACTGGTCCCA---GGATTGATGGCAAGAGGCCTATAACTGGTCTCCTAGTTCCTATCCAGTCCTT-CCCCGATAAACTCAGAACCCTGTCCTCTTGGAACAGTG--AATCCCCAGCAGAGGACCTCA----------GCTCCCAAGGTC-C-ATTCAGCCTGGGCTGCCTGGAACCGGCTACCCTGCCCA--GGAGCTGTTAACACCTGGAGCTCAGTGCAGGAAGAATGCAGGGGCACTTGGTGG------GGAGGTGAGTGAGTGCAGA-GGGGTTCTGGGAATTCCTTGAGCCCTT----------GCAGTAGCTCCCAC------------TCAG-GCTGTCCTGCA--GGTCCTCACAAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30814060 1340 + 171630274 TGCT-GCCGCCC-TCGAGGCCCAGCCGAGCCTGGAGG--AGAGACCGGGTCCGCGTGGGTGCGGCCCTTGGTGCCTGGCGAACCCAGGAGCCCCCACCCTCCAGTTC-G------GGCGGGATGGCCCAATCGGGCGATGTGAGGGTCC--GTTTGGAAACCACTCTCTGCTTTGAGGACACGCGCTGAGCTTCCCTGGGAGG-AGGAGGCTGTGAAGGAAGAGGGGCAGACTCGAGGCCTCTGGCCAGCCGCGCGTCCGGCACAGGCCTCCCTGTGTCCACAGCTAGTCCTCCAGCTTTTCACAACAGTGACCTTAACAGCACCCAGAGTCTGCGGCTTCTATCCAGTCCGCTCCTTCCTCTGC-GTGGCCAAGAGGGCGCAGTGCTGGTGGCTTTAGTGAGTGGCTGTGAGCGCGGGGCTGGGGCCGAGAGCGGAGGACCGGAGAGG----AGCCGCCAAGCCACCACCGGCCCTGGGGCACCGTCAGCGTCTCCCGGC-GACATCACG--CTGCAGATTCGGGTTTGCCCAGCAGCTGCTCCGGGTTCAGGCTTCCTCTC-C----ACCTTCCCACCTCTCT-CAAGAGGACCTGGCCCATTAGGAAGCCCCGG-GCGTTTTGTGTACTGGGTGGTCAAAAATGGTGTGTGGGGGA---GCTCAATTGAGATTAGACGTCAATAACGGGGAACCTGGGG-CC-GCAGAGTTGGGGCCCAGGTGGGGACCAGGAGCTTCCCTGGGAGTCAACTTCCAAGAAAGGTGACTGAGTGAGGGGCACTACTGCAAGAGGAAGAAAGATTGATTTGCAATTGACTTGTAGCCCCCGATCGGTTTCGGTCCCTACTTGACCGCCAGAGGTCTGCAGCTCTCTCCTGGGTGAGATCTGAAGACCCCTGGGGAGAGCTGAGCCCAAGGGACTTTTTAATTCTACAGAGGAAC----------------CTC--CTCTGCGCCCAGAGAAGGAAGGCTGGGCGTGATG------GTGTCTG-AGAAAAGTTACAG-------------------AGAGAAA----AGGTCAAGTTCATTTTTGCTCTCCTGTGCTGAACTCAG---ATAAATTAACTGGTGTTAATTGGAGTGATGACAACAGGCCTATAACTGGTCTCTTGCTTCCTATCTAGCCCTTTCCCCCATAAAGGCAGAATCCTGTCCTCCTGAAACAGTG--AATCCCCAGCAGAGGACCTGA----------GCTCCCAAGATCGA-ATTCAGCCTGGGCTGCCTGGAACCGGCTACCCTGCCCA--GCAGCTGTCAACACCTGGAGCACAGTGCAGGAGGAAGGCAGGGGAGCTTGGTGG------GAAGGTGAGTGAGTGCAGA-CAAGTTCCAGGAACTGCTTGGACCTTT----------GGGGTAGCTCTCAC------------TCAG-GCCGCcctgca--ggtcctcacacag
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1244697 1345 -   1771730 TGCT-GCCGCCC-TCGAGGCCCAGCCGAGCCTGGGGG--AGAGATCGGGTCCGCACGGGTGCGGCCCTTGGTGCCTGGAGAACCCAGGAGCCCCCATCCTCTAGCTCGG------GGCGGGGTGGCACAATGGGGCGCTGTAGGCGCCC--GTTTGGAAACCACTATCTGCTCTGAGGTCACGCGCGACGCTGCCCTGGGAGG-AGGAGGCGGTGAAGTAAGAGGGGCAGACACCAGGCCTCTGGCCAGCCGCGCCTCGGGCCCGGGCCTCCCTGTGTCCACATCTAGTCCTCCCGCTTTTCACAACAGTGACCTTGACAGCACCCACAGTCTGCGGCTTCTGTCCAGTCCGCTCCTTCCTCTGC-TTGGCCAAGAGGGCGCAGTGCTGGTGTCTTTAGTGAGTGGCCGTGAGCGCAGGGCTGGGGCCGAGAGCAGAGGACAGGAGAGG----AGCCGCCAAGCCACCACTGGCCCTGGGGCACGGTCGCCGTCTCCCGGC-GAGGTCAGG--CCGCAGATTCGGGTTTGCCCAGCAGCTGCTCCGCGCTCAGGCTTCCTCTC-CACGTACCTGCCTGCCTCCCT-CAGGAGGACCTGGCCCATTAGGAAGCCCCGG-GCGTTTTGTGGACTGGATGGTCAAAAATGGTGTGTGGGGGA--GGGTCAATTAAGATTAGACGTGAATAACGGGGAACCTGGGG-CC-GCAGGATTGGGGCCCAGGTGAGGACCAGAAGCTTCCCTGGGAGTCAACTTCCAAGAAAAGTGACTAAGTGAGGGGCACCAGGGCAAGGGAAAGAAAGATTGATTTGCAATTGACTTGTAG-CCCCGATCGGTTTTGGTCCCTGCTTGACCGCCAGAGGTCTGCAGCTCTCTCCTGGGTGAGTTCTGAAGACCCCTGGGGAGAGCTGAGCCCAAAGGACTTTTTAATTCTACAGAAGAACTTCCCCTGAGGCAGATCTC--CTCTGTGCCCAGGGAAGGAAGGCTGGGCGTGATG------GTGTA-G-AAAAAAGTTACAC-------------------AGAGAAA----AGGTCAGGTTCATTTTTGCTATCCTGTGCTGAACCCAG---ATAAATCAACTGGTGTTGACTGCAGTGATGGCAATAGGCCTATAACTGGTCTCCTGCTTCCTATCCAGCCCTT--CCCCATAAAGTCAGAATCCTGTCCTCTTGAAACAGTG--AATCCCCAGCAGAGGACCTCA----------GCTCCCAAGGTCGA-ATTCAGTCTGGGCTGCCTGGAACCGTCTACCCTGCCCA--GGAGCTGTCAACGCCTGGAGCACAGTGCAGGAGGAATGCAGGG-------------------AGGTGAGTGAGTGCAGA-CCGGTTCCAGGAACTGCTTGGACCCTT----------GGGGTAGCTCTCAC------------TCAG-GCGGTTCTGCA--GGTCCTCACACAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     432269 1349 -    486031 TGTTCGCCACCC-TTGAGGCGCAGCCGAGCCTGCAGG--AGAGACCGGGTCCGCGCAGGTGCGGCCCGTGGTGCCTGGAGACCCCACGAGCCCCCACCCTCCAGCTCGG------GGCGTGATGGCCCAATT-GGCGCTGTGGGGATCT--GTTTCGAAACCACTCTCTGCTTTGAGGACACGTGCGGAGCT-CTCTGGGAAG-AGGAGGCTGTGAAGGAAGAGGGGCTGACTCGAGGCCTCTGGCCAGCTGCGCCTCCGGCCCAGGCCTCCCTGTGTCCACGACTAGTCCTCCGGCTTTTCACAACAGTGACCTCGACAGCACCCAGAGTCTGCGGCTTCTGTCCAGTCCGCTCCTTCCCCTGC-GTGGCCAAGAGGGCGCACTGCTGGTGTCTTTAGTGAGTGGCTGTGAGCGCGGGGCTGGGGCCGAGAGCGGAGGACGAGAGAGG----AGCCGCCAAGCCACCACCGGCCCTGGGGCACCGTCACCGTCTCCCGGC-GAGATCAGG--CCGCAGATTCGGGTTTGCCCAGCAGCTGCTCCGCGTTCAGGCTTCCTCTC-C----ACCTCCCTGCCTCCCT-CAGGAGGACCTGGCCCATTAGGAAGCCCGGG-GCGTTTTGTGGACTGGGTGGTCAAAAATGGTGTGTGGGGGA--GGGTCAGTTGAGATTAGACCTGAATAACGAGGAACCTGGGG-CC-TCAGGGTTGGGGCCCAGGTGGGGACTAGAAGCTTCCCTGGGAGTCAACTTCCAAGAAAGGTGACTAA-CGAGGGGCACTACGGCAAGAGGAAGAAAGATTGATTTGCAATTGACTTGTAG-CCCCGATTGGTTTTGATCCCTATTTGACCACTAGAGGTCTGCAGCTCTCTCCTGGGTGAGTTCTGAAGGCCCCTGGGGAGAGCTGAGCCCAAGGGACTTTTTAATTCTACAGAGGAACTCCCCCTGAGGTAGAT-----CTCTATGCCCAGGTATGGAAGGCTGGGCGTGAT-------GTATCTG-AAAAAAGTTACAC-------------------AGAGAAA----AAGTCAAGTTCATTTTTGCTATCCTGTACTGAAC-CAG---ATAAATTAACTGGTGTTAATTGGAGTGATGGCAATAGGCCTATAACTAGTCCCCAGCTTCCTATCCAGCCCTT-CCCCCATAAAGTCAGAATCCTGTCCACTTGAAACAGTG--AATCCCCAGCAGAGGACCTCG----------GCTCCCAAGATCGA-ATTCACCCTGGGCTGCCCGGAACCGGCTATCCTGCCCA--GGAGCTGTCAATGCCTGGAGCACATTGCAGGAAGAATGCAGGGGAGCTTGGTGG------GGAGGTGAGTGAGTGCAGA-CCGATTCCAGGAACTGCTTGGACCCTT----------GGGGTGGCTCTCAC------------TCAG-GCGGTCCTGCA--GGTCCTCACACAG
i aotNan1.NW_018496901v1   T 21609 C 0
s otoGar3.GL873550           596255 1317 +  18854210 ----TGCTGCCTGTGGAAGCAGAGGAAAGCCTGAAGACTGGAGGCTG------------TGGGGCCCTGGCTGCCTGGCAACCCCAC-CTCCCCCAGCCTCTAGCTTGGGGGGAAGGAGGAATGGGTGAACTGGGTGAT-TGGAGGACCAGGTTTGGAAACC--TCTCTG-TCTGAAGATGGGCAAGGAGCTTCCCTGGGAGACTGAATACTGTA----AAG-------GACAGGTGGCCTCTGGACAGCCGC-------------ACTTCCCACTTTCTATATCTGGTCTCTTGGCTTTCCAAACCAGTGAACTTGAAAGCACAT-GAATCCACTACTTCTGTCCACCATTCC-CTCCCCTTGTGGTGACCTCAGCATGACAGCGCTGGTGACTTCAGGATGTGAAAGTGAGTGTGGGGCTAGGGCCTGCAGCAGCTAACAAGAAAGG----AGAGGCTGGCCCACTGCCAGCCCCAGG-----ATCACTGGCTCCCAGCGGAAGTTAGGCTCCCCAAATTCAGAT-------GGGGGGGCTCC-CTTCCACGTTTGCGCTCTC----ACCTCCCAGCCTCTCTCAAGTAGGACCTGGCTCACTGGGAAGCCCAGGTACACACTTTGAAC-GGTGGTTCAAAAAGGGTGTG--AGGGAGAGAAT--AGTCAGATCAGACCTGAAAAACAGGGAACCTCAGGACT-ACAGATTT-------------------GAAACTTCCC------------TCCACTGGGCGTGACTAA--GAAGGCTCCAGGCCCCCAAAGAAGAAAGGTTGATTCGTAACTGACTTGTTG-GCTTGGTCATTATTATTCCCTCTCTGAGCACC-TAAGTCTGCAGCTTTATCCTTGACGAGATCTGGCTGCTCCTGGAGAGAGAGGAGCCCAAGAGACTTTTGAATCCGATAGATGAAC--AGCGTGAAGAGGGCGCAGGCTATGTGCTTAAG--------------CATGATGATTGATGTCTCTG-AAAAA--TTACACGaattttatataatgtataataaaaattataGGCCAGTTTCATTTTTGCATTCCACTACTGAATACAGATCATCACTTAACTAGTCCCA---GGGCAGACGGCAACAGGCTTAAAACTGCTTTTCCAGTTCCTATCCAGCCCTT-TCCCAATAAAGCGTGTCTCCCCTACTCTTGAAAAAGAGCTAACCTCCAGCGGAGGGTCAGAGAGGATTGTTGCTCAAAAGCCC-CGATTCAGCCTCCGCTGCTT-----------CCGTGTCCGCTGGAGTCGGTAAAACCTGCAGTCAAGCGTCGGGC-----CAGAGTAGCTTCGTGGGGCGGAGGAGGTGAGTGAGCACTTA-GGGAT-----GAGCACCCTGGGCCTCTATCTGGCCGGGCACTCACTTTCACATCCTGAAGTTACCAGCGCTGTCATGCTGCGGTCACCACAAGG
i otoGar3.GL873550         C 0 T 34206
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=1203199.000000
s hg38.chr6_GL000254v2_alt  1809413 162 +   4827813 CCCACTACTGAGCAGGAAGAATGTCCCCAGGAGAGGCAAGAGGTGGGGCAAGGGCGAGTATGGGGTCCCTTGCA-TTTGCGGCAAAATGGAGAGG-GAGATGAGAGGCAAG--GAGT-ACTGGCCCTCACATGGAAACCTATAGCACACTGCCCAAAGGG-AATGGGA
s panTro5.chr6             30655556 162 + 175400573 CCCACTACTGAGCAGGAAGAATGTCCCCAGGAGAGGCAAGGGGTGGGGCAAAGGCAGGTATGGGGTCCCTTGCA-TTTGCGGCAAAATGGAGAGG-GAGATGAGAGGCAAG--GAGT-ACTGGCCCTCACATGGAAACCTACAGCACACTGCCCAAAGGG-AATGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31079458 162 + 173848474 CCCACTACTGAGCAGGAAGAATGTCCCCAGGAGAGGCAAGGGTTGGGGCAAAGGCGGGTATGGGGTCCCTTGCA-TTTGCGGCAAAATGGAGAGG-GAGATGAGAGGCAAG--GAGT-ACTGGCCCTCACATGGAAACCTACAGCACACTGCCCAAAGGG-AATGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     584846 162 +   2037526 CCCACTACTGAGCAGGAAGAATGTCCCCAGGAGAGGCAAGGGGTGGGGCAAAGGCGAGTATGGGGTCCCTTGCA-TTTGCGGCAAAATGGAGAGG-GAGATGAGAGGCAAG--GAGT-ACTGGCCCTCACATGGAAACCTACAGCACACTGCCCAAAGGG-AATGGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75257383 162 + 122973662 CCCACTACTGAGCACGAAGAATGTCCCCAGGAGAGGCAAGGGGTGGGGCAAAGGCAAGTATGGGGTCCCTTGCA-TTTGTGGCAAAATGGAGAGG-GAGATGAGAGGCAAG--GAGT-ACTGGCCCTTACATGGAAACCTAGAGCACACGGCCCAAAGGG-AATGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31155613 157 + 172585720 -----CACTGAGCAGGAAGAATGTCCCCAGGAGAGGCAAGGGGTGGGGCAAAGGCAGGTGTGGGGTCCCTTGCA-TTTGCAGCAAACTGGAGAGG-GAGAGGAGAGGCAAG--GAGT-ACTGGTCCTCACGTGGAAACCTACAGCACACTGCCCTGAGGG-AATGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30447749 162 - 170955103 CCCACCACTGAGCAGGAAGAATGTCCCCAGGAGAGGCAAGGGGTGGGGCAAAGGCAGGTGTGGGGTCCCTTGCA-TTTGCAGCAAACTGGAGAGG-GAGAGGAGAGGCAAG--GAGT-ACTGGTCCTCACGTGGAAACCTACAGCACACTGCCCTAAGGG-AATGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     701839 163 +   1495729 CCCACCACTGAGCAGGAAGAATGTCCCCAGGAGAGGCAAGGGGTGGGGCAAAGGCAGGTGTGGGGTCCCTTGCA-TTTGCAGCAAACTGGAGAGG-GAGAGGAGAGGCAAG--GAGTAAATGGTCCTCACGTGGAAACCTACAGCACACTGCCCTAAGGG-AATGGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     819312 162 -    863181 CCCACCACTGAGCAGGAAGAATGTCCCCAGGAGAGGCAAGGGGTGGGGCAAAGGCGAGTATGGGGTCCCTTGCA-TTTGCAGCAAACTGGAGAGG-GAGATGAGAGGCAAG--GAGT-ACTGGTCCTCACGTGGAAACCTACAGCACACTGCCCTGAGGG-AATGGGA
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29997918 161 -  71996105 CCCACTAGTGAGCAGGAAGAATGTCCCCAGGAGAGGCAA-GGGTGGGGCAAAGGCGAGTATGGGGTCCCTTGCA-TTTGCAGCAAACTGGAGAGG-GAGATGAGAGGCAAG--GAGT-ACTGGTCCTCACGTGGAAACCTACAGCACACTGCCCTGAGGG-AATGGGA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     615946 162 -   1829203 CCCACTACTGAGCAGGAAGAATGTCCTCAGGAGAGGCAGGGAGTGGGGCAAAAGCGAGTATGGGGTCCCTTGCA-TTTGCAGCAAACTGGAGAGG-GAGATGAGAAGCAAG--GAGT-ACTGGCCCTCACATGGAAACTTACAGCACACTGCCCTGAGGG-AATGGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30815400 163 + 171630274 cccatttctgagcaggaaggatgaccccagtccaggcaagGGGTGAGGCAAAGGCAGGTATGGGGTCGCTTGCACTCTGCAGCAAACTGGAGAGG-GTCATGAGAAGCAAG--GAGT-ACTGGCCCTCACGTGGAAACCTAAAGTGCACTGCCCAAAGGG-AATGGGA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1246042 163 -   1771730 CCCATTTCTGAGCCGGAAGGATGCCCCCAGTAGAGGCAAGGGGCGAGGCACAGGCAGGTATGGGGTCGCTTGCACTTTGTAGCAAACTGGAGAGG-GACATGAGAAGCAAG--GAGT-GCTGGCCCTCACATGGAAACCTAGAGTGCATTGCCCAAAGGG-AATGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     433618 162 -    486031 CCCATTTCTGAGCAGGAAGGATG-CCCCAGTAGAGGCAAGGGGTGAGGCAAAGGCAGGTATGGGGTCACTTGCACTTTGCAGCAAACTGGAGAGG-GAGATGAGAAGCAAG--GAGT-ACTGGCCCTCACATGGAAACCTACGGTGCACTGCCCAAAGGG-AATGGGA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           563366 144 +  18854210 CCCGTCTC----CAGAACGGGCTCCCCCAAG-------------GAGGCAAATAT---TCTGGGGTCACCTGGACTTCGCTGC-AGCGGAAGAGGAGAGACTTGAGGCGAGCTGAGC-AGGGACGCTGCCGGTGAAACTTAGACCACAGTG--GAAAGGGCAATGGGA
i otoGar3.GL873550         T 34206 I 68220
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=4422883.000000
s hg38.chr6_GL000254v2_alt  1809575 604 +   4827813 AGGGAAACACAGCCACGCACGTCCACAGAAGACTTGGCAGATGGGAGAGGGTAGCTTTGAGGACTGAAATCCCTACTTCACAGGACTCTGGATACTTGGACACTTGCTTCCTCCTGTGCTTCTGTACGAATCTCAGGACTGT----GGGACACTCTCTGCACTCTTATTCTTGTAA-TTCTCTTCTCTCCGGATGGCCTCCTTTCCCTTGGAGTGCAGCAGTGGCCATCAGATTCTTGGGCTGAAGGTCACTGGGTGACTGTGGGATTCTGGGGCCAGTTACTTCCCTTTCTTAGCCACCCCATGCTTTACAGAACTGAGCTCCACAGTCATACTCATCTCTCCCAGTGAAGCTCAAAGGAATTATTAATA-AAAAACACAAAAACATAAATGGAATGATGTTTATGGAACCAATTGATTAACGTGGAAAAGTATGGGCTTCCCAGTTTTCTGCCCTTCGTGAGAACTTAATCCTGAAACACTGATCTCATGTCAACCTTCTGCCTTAACTGGGAATTCCTGTGGCCAGTCTGTTCTAAGGGTATCCCGTGAGCCCCTAGGGATGGAGAACAGAAGGCCACTTTTCCTAAACACACACGTGGTTCTGTCC
s panTro5.chr6             30655718 603 + 175400573 AGGGAAGCACAGCCACGCACGTCCACAGAAGACTTGGCAGATGGGAGAGGGTAACTTTGAGGACTGAAATCCCTACTTCACAGGACTCTGGTTACTTGGACACTTGCTTCCTCCTGTACTTCTGTACGAATCTCA-GACTGT----GGGACACTCTCTGCACTCTTATTCTTGTAA-TTCTCTTCTCTCCAGATGGCCTCCTTTCCCTTGGAGTGCAGCAGTGGCCATCAGATTCTTGGGCTGAAGGTCACTGGGTGACTGTGGGATTCTGGGGCCAGTTACTTCCCTTTCTTAGCCACCCCATGCTTTACAAAACTGAGCTCCACAGTCATACTCATCTCTCCCAGTGAAGCTCAAAGGAATTATTAATA-AAAAACACAAAAACATAAATGGAATGATGTTTATGGAACCAATTGATTAACGTGGAAAAGTATGGGCTTCCCAGTTTTCTGCCCTTCGTGAGAACTTAATCCTGAAACACTGATCTCATGTCAACCTTCTGCCTTAACTGGGAATTCCTGTGGCCAGTCTGTTCTAAGGGTATCCCGTGAGCCCCTAGGGATGGAGAACAGAAGGCCACTTTTCCTAAACACACACGTGGTTCTGTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31079620 603 + 173848474 AGGGAAGCACAGCCACGCACGTCCACAGAAGACTTGGCAGATGGGAGAGGGTAGCTTTGAGGACTGAAATCCCTACTTCACAGGACTCTGGATACTTGGACACTTGCTTCCTCCTGTACTTCTGTAAGAATCTCA-GACTGT----GGGACACTCTCTGCACTCTTATTCTTGTAA-TTCTCTTCTCTCCAGATGGCCTCCTTTCCCTTGGAGTGCAGCAGTGGCCATCAGATTCTTGGGCTGAAGGTCACTGGGTGACTGTGGGATTCTGGGGCCAGTTACTTCGCTTTCTTAGCCACCCCATGCTTTACAAAACTGAGCTCCACAGTCATACTTATCTCTCCCAGTGAAGCTCAAAGGAATTATTAATA-AAAAACACAAAAACATAAATGGAATGATGTTTATGGAACCAATTGATTAACGTGGAAAAGTATGGGCTTCCCAGTTTTCTGCCCTTCGTGAGAACTTAATCCTGAAACACTGATCTCATGTCAACCTTCTGCCTTAACTGGGAATTCCTGTGGCCAGTCTGTTCTAAGGGTATCCCGTGAGCCCCTAGGGATGGAGAACAGAAGGCCACTTTTCCTAAACACACACGTGGTTCTGTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     585008 603 +   2037526 AGGGAAGCACAGCCACGCACGTCCACAGAAGACTTGGCAGATGGGAGAGGGTAGCTTTGAGGACTGAAATCCCTACTTCACAGGACTCTGGATACTTGGACACTTGCTTCCTCCTGTACTTCTGTACGAATCTCA-GACTGT----GGGACACTCTCTGCACTCTTATTCTTGTAA-TTCTCTTCTCTCCAGATGGCCTCCTTTCCCTTGGAGTGCAGCAGTGGCCATCAGATTCTTGGGCTGAAGGTCACTGGGTGACTGTGGGATTCTGGGGCCAGTTACTTCCCTTTCTTAGCCACCCCATGCTTTACAAAACTGAGCTCCACAGTCATACTCATCTCTCCCAGTGAAGCTCAAATGAATTATTAATA-AAAAACACAAAAACATAAATGGAATGATGTTTATGGAACCAATTGATTAATGTGGAAAAGTATGGGCTTCCCAGTTTTCTGCCCTTCGTGAGAACTTAATCCTGAAACACTGATCTCATGTCAACCTTCTGCCTTAACTGGGAATTCCTGTGGCCAGTCTGTTCTAAGGGTATCCCGTGAGCCCCTAGGGATGGAGAACAGAAGGCCACTTTTCCTAAACACACACGTGGTTCTGTCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75257545 608 + 122973662 AGGGAACCACAGCCACGCACGTCCACAGAAGACTTGGGAGATGGGAGAGGGTAGCTTTGAGGACTGAAATCCCTACCTCACAGGACTCTGGATACTTGGACGATTGCTTCCTCCTGTGCTTCTCTATGAATCTCAGGACTGTGTTAGGAACACTCTCTGCACTCTTATTATTGTAA-TTCTCTTCTCTCCGGATGGCCTCCTTTCCCTTGGAGTGCAGCAGTGGCCATCAGATTCTTGGGCTGAAGGTCACTGGGTGACTGTGGGATTCTGGGGCCAGTTACTTCCCTTTCTTAGCCACCCCATGCTTTATAAAACTGAGCTCCACAGTCATACTCATCTCTCCCAGTGAAGCTCAAAGGAATTATTAATA-AAAAACACAAAAACATAAATGGAATGATGTTTATGGAACCAATTGATTAACGTGGAAAAGTATGGGCTTCCCAGTTTTCTGCCCTTCGCGAGAACTTAATCCTAAAACACTGATCTCACGTCAACCTTCTGCCTTAACTGGGAATTGCTGTGGCCAGTCTGTTCTAAGGGCATCCCGTGAGCCCCTAGAGTTGGAGAACACAAGGCCACTTTTCCTAAACACACACGTGATTCTGTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31155770 598 + 172585720 AGGGAACCACAGCCACGCTCATCCACAGAAGACCTGGCAGATGGGAGAGGGTATCCTTGAGGAC---------TACCTCACAGGACTCTGGATACTTGGACACTTGCTTCCTCCTGTGCTTCTCTATAAATCTCAGGACTGTGTTTGGGACACTCTCTGCACTCTTATTCTTGTAA-TTCTCTTCTCTCTGGATGGCCTCCTTTCCCTTGGAGTGAAGGAGTGGCCATCAGATTCTTGGGCTGAAGGTCACTGGGTGACTGTGAGATTCTGGGGCCAGTTACTTCCCTTTCTTAGCTACCCCATGCTTTACAAAACGGAGCTCCGCAGTCACACTCATCTCTCCCAGTGAAGCTCAAAGGAATTATTAACA-AAAAACACAAAAACATAAATGAAATGATGTTTATGGAGCCAACTGATTAACATGGAAAAGCACGGGCTTCCCACTTTTCTGCCCTTCGTGAGAACTTAATCCTAAAACACTGATGTCATGTCAACCTTCTGCCTTAACTGGGAATTGCTGTAGTCAGTCTGTTCTAAGGGCATCCCGTGCGCCCCTAGGGTTGGAAAA-ATAAGGCCACTTTTCCTAAACATACATGTGGTTCTGTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30447911 607 - 170955103 AGGGAACCACAGCCAGGCTCGTCCACAGAAGACTTGGCAGATGGGAGAGGGTATCCTTGAGGACTGAAATCCGTACCTCACAGGACTCTGGATACTTGGACACTTGCTTCCTCCTGTGCTTCTCTATGAATCTCAGGACTGTGTTTGGGACACTCTCTGCACTCTTATTCTTGTAA-TTCTCTTCTCTCTGGATGGCCTCCTTTCCCTTGGAGTGAAGGAGTGGCCATCAGATTCTTGGGCTGAAGGTCACTGGGTGACTGTGAGATTCTGGGGCCAGTTACTTCCCTTTCTTAGCCACCCCATGCTTTACAAAACCGAGCTCCGCAGTCATACTCATCTCTCCCAGTGAAGCTCAAAGGAATTATTAATA-AAAAACACAAAAACATAAATGAAATGATGTTTATGGAGCCAACTGATTAACATGGAAAAGCACGGGCTTCCCACTTTTCTGCCCTTCGTGAGAACTTAATCCTAAAACACTGATGTCATGTCAACCTTCTGCCTTAACTGGGAATTGCTGTAGTCAGTCTGTTCTAAGGGCATCCCGTGAGCCCCTAGGGTTGGAAAA-ATAAGGCCACTTTTCCTAAACACACATGTGGTTCTGTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     702002 607 +   1495729 AGGGAACTACAGCCACGCTCGACCACAGAAGACTTGGCAGATGGGAGAGGGTATCCTTGAGGACTGAAATCCCTACCTCACAGGACTCTGGATACTTGGACACTTGCTTCCTCCTGTGCTTCTCTATGAATCTCAGGACTGTGTTTGGGACACTCTCTGCACTCTTATTCTTGTAA-TTCTCTTCTCTCTGGATGGCCTCCTTTCCCTTGGAGTGAAGGCGTGGCCATCAGATTCTTGGGCTGAAGGTCACTGGGTGACTGTGAGATTCTGGGGCCAGTTACTTCCCTTTCTTAGCCACCCCATGCTTTACAAAACCGAGCTCCGCAGTCATACTCATCTCTCCCAGTGAAGCTCAAAGGAATTATTAATA-AAAAACACAAAAACATAAATGAAATGATGTTTATGGAGCCAACTGATTAACATGGAAAAGCACGGGCTTCCCACTTTTCTGCCCTTTGTGAGAACTTAATCCTAAAACACTGATGTCATGTCAACCTTCTGCCTTAACTGGGAATTGCTGTAGTCAGTCTGTTCTAAGGGCATCCCGTGAGCCCCTAGGGTTGGAAAA-ATAAGGCCACTTTTCCTAAACACACATGTGGTTCTGTCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     819474 607 -    863181 AGGGAACCACAGCCACCCATGTCCACAGAAGACTTGGCAGATGGGAGAGGGTATCCTTGAGGACTGAAATCCCTACCTCATAGGACTCTGGATACTTGGACACTTGCTTCCTCCTGTGCTTCTCTATGAATCTCAGGACTGTGTTTGGGACACTCTCTGCACTCTTATTCTTGTAA-TTCTCTTCTCTCTGGATGGCCTCCTTTCCCTTGGAGTGAAAGCGTGGCCATCAGATTCTTGGGCTGAAGGTCACTGGGTGACTGTGAGATTCTGGGGCCAGTTACTTCCCTTTCTTAGCCACCCTGTGCTTTACAAAACGGAGCTCCGCAGTCATACTCATCTCTCCCAGTGAAGCTCAAAGGAATTATTAATA-AAAAACACAAAAACATAAATGAAATGATGTTTATGGAGCCAACTGATTAACATGGAAAAGCACGGGCTTCCCACTTTTCTGCCCTTCGTGAGAACTTAATCCTAAAACACTGATGTCATGTCAACCTTCTGCCTTAACTGGGAATTGCTGTAGTCAGTCTGTTCTAAGGGCATCCCGTGAGCCCCTAGGGTTGGAAAA-ATAAGGCCACTTTTCCTAAACATACATGTGGTTCTGTCC
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29998079 607 -  71996105 AGGGAACCACAGCCACCCACGTCCACAGAAGACTTGGCAGATGGGAGAGGGTATCCTTGAGGACTGAAATCCCTACCTCATAGGACTCTGGATACTTGGACACTTGCTTCCTCCTGTGCTTCTCTATGAATCTCAGGACTGTGTGTGGGACACTCTCCGCACTCTTATTCTTGTAA-TTCTCTTCTCTCTGGATGGCCTCCTTTCCCTTGGAGTGAAGGCGTGGCCATCAGATTCTTGGGCTGAAGGTCACTGGGTGACTGTGAGATTCTGGGGCCAGTTACTTCCCTTTCTTAGCCACCCTGTGCTTTACAAAACGGAGCTCCGCAGTCATACTCATCTCTCCCAGTGAAGCTCAAAGGAATTATTAATA-AAAAACACAAAAACATAAATGAAATGATGTTTATGGAGCCAACGGATTAACATGGAAAAGCACGGGCTTCCCACTTTTCTGCCCTTCGTGAGAACTTAATCCTAAAACACTGATGTCATGTCAACCTTCTGCCTTAACTGGGAATTGCTGTAGTCAGTCTGTTCTAAGGGCATCCCGTGAGCCCCTAGGGTTGGAAAA-ATAAGGCCACTTTTCCTAAACATACATGTGGTTCTGTCC
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     616108 602 -   1829203 AGGGAACCACAGCCACGCTTGCCCACAGAAGACCTGGCAGATGGGAGAGGGTAGTTTTGAGGACTGAAATCCCTACCTCATAGGACTCTGGATACTTGGATACTTGCTTCCTCCTGTGCTTCTCTATGAAACTCAGGACTGTGTTTGGGACACTCTCTGCACTCTTA---CTGTAA-TTCTCTTCTCTCTGGATGGCCTCCTTTCCCTTGGAGTGAAGGAGTGGCCATCAGATTCTTGGGCTGAAGGTCACTGGGTGAC--TGAGATTCTGGGGCCAGTTACTTCCCTTTCTTAGCCACCCCATGCTTTACAAAACTGAGCTCCACAGTCACACTCATCTCTCCCAGTGAAGCTCAAAGGAATTATCAATA-AAAAACACAAAAACGTAAATGGAATGATGTTTATGGAACCAACTGATTAACATGGAAAAGCACGGGCTTCCCACTTTTCTGCCCTTCGTGAGAACTTAACCCTAAAACACTGATGTCATGTCAACCTTCTGCCTTAACTGGGAATTGCTGTAGTCAGTCTGTTCTAAGGGCATCCCGTGAGCCCCTAGGGTTGGAAAA-ATAAGGCCACTTTCCCTAAACACACATGTGGTTCTGTCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30815563 609 + 171630274 AGGGAACCACAGCCACTCACATCCACAGCAGACTTCGCAGATGGGAGAGGGTGGCCTTGAGGACTGAAATCCCTACCTCATAGGACTCTGGATACTCGGACACTGGCTTCCTCCTGTGCTTCTGCACGAGCCTCAGGACTGTGTTTGGGACACTCTCTGCACTCTTGCCCTTGTAATTTCTCTGCTCTCCAGATGGCCTCCTTTCCCCTGGAGTGCAACAATGGCCATCAGATTCTTGTGCTGAAGGTCACCGGGTGATTGTGAGATTCTGGGGCCAGTTACTTCCCTTTCTTAACTACCTCAGTCTTCACAAAACTGAGCTCCACAGTCATACGCATCGCTGCCGGTGCAGCTCAAAGGAATTGTTTATATAAAAAAACAAAAACTTAAATGGAATGATGTTTATGGAGCCAATTGTTTAACATGGAAAAGC-TGGACTTCCCAGTTTTCTGCCCTTCCTGAGAACTTAATCGTAAAACACTAATCTCATGTCAGTCTTCTGCGTTAACTGGGAATTGCTGTAGCTAGTCTGTTCTAAAGGCAACTCGTGAGCCCTTAGGATTGGAGAACACACGACCACTTGTCCTAAACACATATGTGGTTCTGTCC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1246205 603 -   1771730 TGGGAGCCACAGCCACTCACATCCACAGAAGACTTGGGAGATGGCAGAGGGTGGCTTTGAGGACAGAAATCCCTACCTCATAGGACTCTGGATACTCGGACACTTGCTTCCTCCTGTGCTTCTACTCGAGCCTCAGGACTGTGTTTGGG--ACTCTCTGCA-TCTTGCCCTTGTAA-TTCTCTGCTCTCCAGATGACCTCCTTTCCCCTGGAGTGCAACAATGGCCATCAGATTCTTGTGCTGAAGGTCACTGGGCGATTGTGAGATTCTGGGGCCAGTTACTTCCCTTTCTTAGGTACCTCAGGCTTCACAAAACTGAGCTCCACAGTCATATGCATCTCTCCCCGTGCAGCTCAAAGGAATTATTCACATAAAAAGAC-AAAACTTGAATGGAATGATGTTTATGCAGCCAATTGTTTAACACGGAAAAGC-TGGACTTCCCAGTTTTCTGCCCTTCCTGAGAACTTAATCCTAAAACACTAACCTCATGTCAGTCTTCTGCCTGAACTGGGAATCGCTGTAGCTAGTCTGTTCTAAAGGCAACCCGTGATTCCCTAGGATTGGAGAACACAAGACCACTTTTCCTAAACAC-TACGTGGATCTGTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     433780 604 -    486031 AGGGAACCACAGCCACTCAGATCCACAGAAGACTTGGCAGATGGGAGAGGGTGGCTTTGAGGACTGAAATCCCTACCTCATAGGACTCTGGATACTCGGACACTTGCTTCCTCCTGTGCTTCTACACGGATCTCAGGACTG----TGGGACACTCTCTGCACTCTTGCCCTTGTAA-TTCTCTGCTCTCCAGATGGCCTCCTTTTCTCTGGAGTGCAACAATGGCCATCAGATTCTTGTGCAGAAGGTCACTGGGTGATTGTGAGATTCTGGAGCCAGTTATTTCCCTTTCTTAACTACCTCAGGCTTCAGAAAACTGAGCTCCACAGTCACACGCATCTCTCCCCGTGCAGCTCAAAGGAATTATTCATATAAAAAGACAAAAACTTAAATGGAATGATGTTTATGGAGCCAATTGTTTAACATGGAAAAGC-TGGACTTCCCAGTTTTCTGCCCTTCCTGAGAACTTAATCCTAAAACACTAATCTCATGTCAGTCTTCTGCCTTAACTGGGAATTGCTGTAGCTAGTCTGTTCTAAAGGCAACTTGTGAGCCGCTAGGATTGGAGAACACAAGACCACTTTTCCTAAACACATACGTGGTTCTATCC
i aotNan1.NW_018496901v1   C 0 T 35703
e otoGar3.GL873550           563510 68220 +  18854210 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=14898.000000
s hg38.chr6_GL000254v2_alt  1810179 2 +   4827813 TG
s panTro5.chr6             30656321 2 + 175400573 TG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31080223 2 + 173848474 TG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     585611 2 +   2037526 TG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75258153 2 + 122973662 TG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31156368 2 + 172585720 TG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30448518 2 - 170955103 TG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     702609 2 +   1495729 TG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     820081 2 -    863181 TG
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29998686 2 -  71996105 TG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     616710 2 -   1829203 TG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30816172 2 + 171630274 TG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1246808 2 -   1771730 TG
i cebCap1.NW_016107755v1   C 0 I 37611
e otoGar3.GL873550           563510 68220 +  18854210 I
e aotNan1.NW_018496901v1     434384 35703 -    486031 T
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=5159.000000
s hg38.chr6_GL000254v2_alt  1810181 1 +   4827813 G
s panTro5.chr6             30656323 1 + 175400573 G
i panTro5.chr6             C 0 I 22950
s panPan2.chr6             31080225 1 + 173848474 G
i panPan2.chr6             C 0 I 23022
s gorGor5.CYUI01015528v1     585613 1 +   2037526 G
i gorGor5.CYUI01015528v1   C 0 I 22970
s nomLeu3.chr1a            75258155 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31156370 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30448520 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     702611 1 +   1495729 G
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002535v1     820083 1 -    863181 G
i cerAty1.NW_012002535v1   C 0 C 0
s chlSab2.chr17            29998688 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     616712 1 -   1829203 G
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30816174 1 + 171630274 A
i calJac3.chr4             C 0 C 0
e otoGar3.GL873550           563510 68220 +  18854210 I
e aotNan1.NW_018496901v1     434384 35703 -    486031 T
e cebCap1.NW_016107755v1    1246810 37611 -   1771730 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I

a score=7200.000000
s hg38.chr6_GL000254v2_alt  1810182 2 +   4827813 CC
s nomLeu3.chr1a            75258156 2 + 122973662 CC
i nomLeu3.chr1a            C 0 I 24237
s rheMac8.chr4             31156371 2 + 172585720 CC
i rheMac8.chr4             C 0 I 41082
s macFas5.chr4             30448521 2 - 170955103 CC
i macFas5.chr4             C 0 I 33192
s macNem1.NW_012012100v1     702612 2 +   1495729 CC
i macNem1.NW_012012100v1   C 0 I 74180
s cerAty1.NW_012002535v1     820084 2 -    863181 CC
i cerAty1.NW_012002535v1   C 0 N 0
s chlSab2.chr17            29998689 2 -  71996105 CC
i chlSab2.chr17            C 0 I 51473
s colAng1.NW_012115577v1     616713 2 -   1829203 CC
i colAng1.NW_012115577v1   C 0 I 85181
s calJac3.chr4             30816175 2 + 171630274 CC
i calJac3.chr4             C 0 I 50944
e otoGar3.GL873550           563510 68220 +  18854210 I
e aotNan1.NW_018496901v1     434384 35703 -    486031 T
e cebCap1.NW_016107755v1    1246810 37611 -   1771730 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e gorGor5.CYUI01015528v1     585614 22970 +   2037526 I
e panPan2.chr6             31080226 23022 + 173848474 I
e panTro5.chr6             30656324 22950 + 175400573 I

a score=0.000000
s hg38.chr6_GL000254v2_alt  1810184 22337 +   4827813 [encoded data, 22337 characters]
e otoGar3.GL873550           563510 68220 +  18854210 I
e aotNan1.NW_018496901v1     434384 35703 -    486031 T
e cebCap1.NW_016107755v1    1246810 37611 -   1771730 I
e calJac3.chr4             30816177 50944 + 171630274 I
e colAng1.NW_012115577v1     616715 85181 -   1829203 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            29998691 51473 -  71996105 I
e macNem1.NW_012012100v1     702614 74180 +   1495729 I
e macFas5.chr4             30448523 33192 - 170955103 I
e rheMac8.chr4             31156373 41082 + 172585720 I
e nomLeu3.chr1a            75258158 24237 + 122973662 I
e gorGor5.CYUI01015528v1     585614 22970 +   2037526 I
e panPan2.chr6             31080226 23022 + 173848474 I
e panTro5.chr6             30656324 22950 + 175400573 I

a score=367045.000000
s hg38.chr6_GL000254v2_alt  1832521 675 +   4827813 ggccaggttagtcttgaactcctgacctcgtgatctgcctgcctcggcctaccaaaatgctgcgattacaggcgtgagccaccgttcccggccTATACGttgtttattttggaaaaattaaaaattaagttttttttcattaaagatatgttatttccgatcaagagatcaagaccatcctggccaacatggtgaaaccccgtctctactaaaaacacaaaaattagctgggtgtggtggcacacgcctgtagttccagttactggggaggctgaggcaggagaatcgcttgaacccgggagaaggaggttgcagtgagccgagatcatgccactgcactccagcctggggacagagcaagactctgactcaaaaaaaaaaaaaa-gttgtttctattaacatgtaatgggttattaatattctcttaaatgaattaatatttttaatattttgttttaatatcttttaatttatatatgataaaaattgatacaatccacagaaacaaaatttatttgggtcctcactaatttcttttttcttgttgcccaggctggagggcaatggcacgatcttggctcaccgcaacctcctcctcctgggttcaagtgattctcctgcctcagcctcccaagtagccaggattacagccatgcgccaccacgccggctaatt
s panTro5.chr6             30679274 675 + 175400573 ggccaggttagtcttgaactcctgacctcgtgatctgcctgcctcggcctaccaaaatgctgcgattacaggcgtgagccaccgttcccggccTATACAttgtttattttggaaaaattaaaaattagtgtttttttcattaaagatatgttatttccggtcaagagatcaagaccatcctggccaacatggtgaaaccccgtctctactaaaaacacaaaaattagctgggtgtggtggcacacacctgtagtcccagttactcgggaggctgaggcaggagaatcgcttgaacccaggagaaggaggttgcagtgagccgagatcatgccactgcaatccagcctggggacagagcaagactctgactcaaaaaaaaaaaaaaagttgtttccattaacatgtaatgggttattaatattctcttaaatgaattaatatttttaatattttgttttaatatcttttaatttatatatgataaaaattgataaaatccacagaaacaaaatttatttgggtcctcactaatttcttttttcttgttgcccaggctggagggcaatggcacgatcttg-ctcaccgcaacctcctcctcctgggttcaagtgattctcctgcctcagcctcccaagtagccaggattacagccatgcaccaccacgccggctaatt
i panTro5.chr6             I 22950 C 0
s panPan2.chr6             31103248 672 + 173848474 ggccaggttagtcttgaactcctgacctcgtgatctgcctgcctcggcctaccaaaatgctgcgattacaggcgtgagccaccgttcccggccTATACAttgtttattttggaaaaattaaaaattag-gtttttttcattaaagatatgttatttccggtcaagagatcaagaccatcctggccaacatggtgaaaccccgtctctactaaaaacacaaaaattagctgggtgtggtggcacacacctgtagtcccagttactcgggaggctgaggcaggagaatcgcttgaacccaggagaaggaggttgcagtgagccgagatcatgccactgcaatccaggctggggacagagcaagactctgactcaaaaaaaaaaaaa--gttgtttccattaacatgtaatgggttattaatattctcttaaatgaattaatatttttaatattttgttttaatatcttttaatttatatatgataaaaattgatacaatccacagaaacaaaatttatttgggtcctcactaatttcttttttcttgttgcccaggctggagggcaatggcacgatcttg-ctcaccgcaacctcctcctcctgggttcaagtgattctcctgcctcagcctcccaagtagccaggattacagccatgcaccaccacgccggctaatt
i panPan2.chr6             I 23022 C 0
s gorGor5.CYUI01015528v1     608584 674 +   2037526 ggccaggttagtcttgaactcctgacctcgtgatctgcctgcctcggcctaccaaaatgctgcgattacaggcgtgagccaccgttcccggccTATACGttgtttattttggaaaaattaaaaattag-gtttttttcattaaagacatgttatttccggtcaagagaacaagaccatcctggccaacatggtgaaaccccgtctctactaaaaacacaaaaattagctgggtgtggtggcacacacctgtagtcccagttactcgggaggctgaggcagaagaatcgcttgaacccaggagaaggaggttgcagtgagccgagatcatgccactgcactccagcctggggacagagcaagactctgactcaaaaaaaaaaaaaaagttgtttccattaacatgtaatgggttattaatattctcttaaatgaattaata-ttttaatattttgttttactatcttttaatttatatatgataaaaattgatacaatccacagaaacaaaatttatttgggtcctcactaatttcttttttcttgttgcccaggctggagggcaatggcacgatcttggctcaccgcaacctcctcctcctgggttcaagtgattctcctgcctcagcctcccaagtagccaggattacagccatgcaccaccacgccggctaatt
i gorGor5.CYUI01015528v1   I 22970 C 0
e otoGar3.GL873550           563510 68220 +  18854210 I
e aotNan1.NW_018496901v1     434384 35703 -    486031 T
e cebCap1.NW_016107755v1    1246810 37611 -   1771730 I
e calJac3.chr4             30816177 50944 + 171630274 I
e colAng1.NW_012115577v1     616715 85181 -   1829203 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            29998691 51473 -  71996105 I
e macNem1.NW_012012100v1     702614 74180 +   1495729 I
e macFas5.chr4             30448523 33192 - 170955103 I
e rheMac8.chr4             31156373 41082 + 172585720 I
e nomLeu3.chr1a            75258158 24237 + 122973662 I

a score=107720.000000
s hg38.chr6_GL000254v2_alt  1833196 170 +   4827813 ttttggacttttagtagagacagggtttctccatattggtcgggctggtctcgaactc---------------ccaacctca-----ggtgatcagcccgccttggcctcccaaagtgctgagattacaggcgtgagccaccg-cgcccagccaggactaatttc-----taagagtgtgcagagataccgaaacc
s panTro5.chr6             30679949 169 + 175400573 ttttggatttttagtagagacagggtttctccatattggtcaggctggtctcgaactc---------------ccaacctca-----ggtgatcagcccgccttggcctcctaaagtgctgagattacaggcgtgagccaccg-cgcc-agccaggactaatttc-----taagagtgtgcagagataccgaaacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31103920 170 + 173848474 ttttggatttttagtagagacagggtttctccatattggtcaggctggtctcgaactc---------------ccaacctca-----ggtgatcagcccgccttggcctcctaaagtgctgagattacaggcgtgagccaccg-cgcccagccaggactaatttc-----taagagtgtgcagagataccgaaacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609258 170 +   2037526 ttttggatttttagtagagacagggtttctccatatttgtcaggctggtctcgaactc---------------ccaacctca-----ggtgatcagcccgccttggcctcctaaagtgctgagattacaggcgtgagccgccg-cgcccagccaggactaatttc-----taagagtgtgcagagataccgaaacc
i gorGor5.CYUI01015528v1   C 0 C 0
s mm10.chr17               58924621 195 -  94987271 ttttgttttgtttttcgagacagggtttctctgtgtagccctggctgttctggaactcactttgtagaccaggctggccttgaacacagaaatctgcctgcctctgtctccc-aagtgctgggattaaaggcatgtgccatcaccgccctgctTCTTTCAGTTTCAAGGTTGAGGCTACATAGTAGTTCCCAGGCT
i mm10.chr17               N 0 I 1
e otoGar3.GL873550           563510 68220 +  18854210 I
e aotNan1.NW_018496901v1     434384 35703 -    486031 T
e cebCap1.NW_016107755v1    1246810 37611 -   1771730 I
e calJac3.chr4             30816177 50944 + 171630274 I
e colAng1.NW_012115577v1     616715 85181 -   1829203 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            29998691 51473 -  71996105 I
e macNem1.NW_012012100v1     702614 74180 +   1495729 I
e macFas5.chr4             30448523 33192 - 170955103 I
e rheMac8.chr4             31156373 41082 + 172585720 I
e nomLeu3.chr1a            75258158 24237 + 122973662 I

a score=10276.000000
s hg38.chr6_GL000254v2_alt  1833366 13 +   4827813 taaaagtttaaga
s panTro5.chr6             30680118 13 + 175400573 taaaaggttaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104090 13 + 173848474 taaaaggttaaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609428 13 +   2037526 taaaaggttaaga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75282395 13 + 122973662 TGGAAACTTAAGA
i nomLeu3.chr1a            I 24237 C 0
s mm10.chr17               58924817 13 -  94987271 CCAGAGTCTCAGA
i mm10.chr17               I 1 I 29613
e otoGar3.GL873550           563510 68220 +  18854210 I
e aotNan1.NW_018496901v1     434384 35703 -    486031 T
e cebCap1.NW_016107755v1    1246810 37611 -   1771730 I
e calJac3.chr4             30816177 50944 + 171630274 I
e colAng1.NW_012115577v1     616715 85181 -   1829203 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            29998691 51473 -  71996105 I
e macNem1.NW_012012100v1     702614 74180 +   1495729 I
e macFas5.chr4             30448523 33192 - 170955103 I
e rheMac8.chr4             31156373 41082 + 172585720 I

a score=8598.000000
s hg38.chr6_GL000254v2_alt  1833379 18 +   4827813 ac--tgctgATTGCTGGGAA
s panTro5.chr6             30680131 18 + 175400573 ac--tgctgATTGCTGGGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104103 18 + 173848474 ac--tgctgATTGCTGGGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609441 18 +   2037526 ac--tgctgATTGCTGGGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75282408 16 + 122973662 GCGTTGGTGATTCC----AC
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               58924830 29613 -  94987271 I
e otoGar3.GL873550           563510 68220 +  18854210 I
e aotNan1.NW_018496901v1     434384 35703 -    486031 T
e cebCap1.NW_016107755v1    1246810 37611 -   1771730 I
e calJac3.chr4             30816177 50944 + 171630274 I
e colAng1.NW_012115577v1     616715 85181 -   1829203 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            29998691 51473 -  71996105 I
e macNem1.NW_012012100v1     702614 74180 +   1495729 I
e macFas5.chr4             30448523 33192 - 170955103 I
e rheMac8.chr4             31156373 41082 + 172585720 I

a score=1911.000000
s hg38.chr6_GL000254v2_alt  1833397 1 +   4827813 A
s panTro5.chr6             30680149 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104121 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609459 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75282424 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30867121 1 + 171630274 A
i calJac3.chr4             I 50944 C 0
s saiBol1.JH378327            33010 1 -    750284 A
i saiBol1.JH378327         N 0 C 0
e mm10.chr17               58924830 29613 -  94987271 I
e otoGar3.GL873550           563510 68220 +  18854210 I
e aotNan1.NW_018496901v1     434384 35703 -    486031 T
e cebCap1.NW_016107755v1    1246810 37611 -   1771730 I
e colAng1.NW_012115577v1     616715 85181 -   1829203 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            29998691 51473 -  71996105 I
e macNem1.NW_012012100v1     702614 74180 +   1495729 I
e macFas5.chr4             30448523 33192 - 170955103 I
e rheMac8.chr4             31156373 41082 + 172585720 I

a score=18916.000000
s hg38.chr6_GL000254v2_alt  1833398 15 +   4827813 CTCTGCAGTTTCCCG
s panTro5.chr6             30680150 15 + 175400573 CTCTGCAGTTTCCCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104122 15 + 173848474 CTCTGCAGTTTCCCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609460 15 +   2037526 CTCTGCAGTTTCCCG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75282425 15 + 122973662 CTCTGCAGTTTCCAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30867122 14 + 171630274 CTCCACAGTTTCAT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            33011 14 -    750284 CTCGGCAGTTTCAT-
i saiBol1.JH378327         C 0 C 0
s otoGar3.GL873550           631730 13 +  18854210 CTCCGGAGTTTCA--
i otoGar3.GL873550         I 68220 C 0
e mm10.chr17               58924830 29613 -  94987271 I
e aotNan1.NW_018496901v1     434384 35703 -    486031 T
e cebCap1.NW_016107755v1    1246810 37611 -   1771730 I
e colAng1.NW_012115577v1     616715 85181 -   1829203 I
e manLeu1.NW_012106264v1      28681 15508 +    779361 I
e chlSab2.chr17            29998691 51473 -  71996105 I
e macNem1.NW_012012100v1     702614 74180 +   1495729 I
e macFas5.chr4             30448523 33192 - 170955103 I
e rheMac8.chr4             31156373 41082 + 172585720 I

a score=121639.000000
s hg38.chr6_GL000254v2_alt  1833413 20 +   4827813 TTCCTCTCGTAACCTGGTCA
s panTro5.chr6             30680165 20 + 175400573 TTCCTCTCGTAGCCTGGTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104137 20 + 173848474 TTCCTCTCGTAACCTGGTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609475 20 +   2037526 TTCCTCTCGTAACCTGGTCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75282440 19 + 122973662 TTCCTCTCATAACCTGGTC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31197455 19 + 172585720 TTCCTCTCGTAACCTGGTC-
i rheMac8.chr4             I 41082 C 0
s macFas5.chr4             30481715 19 - 170955103 TTCCTCTCGTAACCTGGTC-
i macFas5.chr4             I 33192 C 0
s macNem1.NW_012012100v1     776794 19 +   1495729 TTCCTCTCGTAACCTTGTC-
i macNem1.NW_012012100v1   I 74180 C 0
s cerAty1.NW_012002513v1       8929 19 -    811324 TTCCTCTCGTAACCTGGTC-
i cerAty1.NW_012002513v1   N 0 C 0
s chlSab2.chr17            30050164 19 -  71996105 TTCCTCTCGTAACCTGGTC-
i chlSab2.chr17            I 51473 C 0
s manLeu1.NW_012106264v1      44189 19 +    779361 TTCCTCTGTTAACCTGGTC-
i manLeu1.NW_012106264v1   I 15508 C 0
s colAng1.NW_012115577v1     701896 19 -   1829203 TTCCTCTCGTAACCTGGTC-
i colAng1.NW_012115577v1   I 85181 C 0
s calJac3.chr4             30867136 19 + 171630274 TTCTTCTCGGAGCCTGGTC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            33025 19 -    750284 TTCTTCTCCGAACCTGGTC-
i saiBol1.JH378327         C 0 C 0
s otoGar3.GL873550           631743 14 +  18854210 TTTCTCTAACA--CTG----
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58924830 29613 -  94987271 I
e aotNan1.NW_018496901v1     434384 35703 -    486031 T
e cebCap1.NW_016107755v1    1246810 37611 -   1771730 I

a score=9910.000000
s hg38.chr6_GL000254v2_alt  1833433 2 +   4827813 TG
s panTro5.chr6             30680185 2 + 175400573 TG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104157 2 + 173848474 TG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609495 2 +   2037526 TG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75282459 1 + 122973662 -G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31197474 1 + 172585720 -G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30481734 1 - 170955103 -G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     776813 1 +   1495729 -G
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1       8948 1 -    811324 -G
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30050183 1 -  71996105 -G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      44208 1 +    779361 -G
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     701915 1 -   1829203 -G
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867155 1 + 171630274 -G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            33044 1 -    750284 -G
i saiBol1.JH378327         C 0 C 0
s mm10.chr17               58954443 2 -  94987271 TG
i mm10.chr17               I 29613 C 0
e otoGar3.GL873550           631757 0 +  18854210 C
e aotNan1.NW_018496901v1     434384 35703 -    486031 T
e cebCap1.NW_016107755v1    1246810 37611 -   1771730 I

a score=3028.000000
s hg38.chr6_GL000254v2_alt  1833435 1 +   4827813 T
s panTro5.chr6             30680187 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104159 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609497 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75282460 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31197475 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30481735 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     776814 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1       8949 1 -    811324 T
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30050184 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      44209 1 +    779361 T
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     701916 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867156 1 + 171630274 G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            33045 1 -    750284 G
i saiBol1.JH378327         C 0 C 0
s proCoq1.NW_012149775v1     636573 1 -   1411461 T
i proCoq1.NW_012149775v1   N 0 C 0
s otoGar3.GL873550           631757 1 +  18854210 C
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58954445 1 -  94987271 C
i mm10.chr17               C 0 C 0
e aotNan1.NW_018496901v1     434384 35703 -    486031 T
e cebCap1.NW_016107755v1    1246810 37611 -   1771730 I

a score=346134.000000
s hg38.chr6_GL000254v2_alt  1833436 33 +   4827813 GTCCTTCTTCCT--GGATACTCATGACGCAGACTC
s panTro5.chr6             30680188 33 + 175400573 GTCCTTCTTCCT--GGATACTCATGACGCAGACTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104160 33 + 173848474 GTCCTTCTTCCT--GGATACTCATGACGCAGACTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609498 33 +   2037526 GTCCTTCTTCCT--GGATACTCATGACGCAGACTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75282461 33 + 122973662 GTACTTCTTCCT--GGATACTCATGACGCAGACTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31197476 33 + 172585720 GTCCTTCTTCCT--GGATACTCATGACGCAGACTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30481736 33 - 170955103 GTCCTTCTTCCT--GGATACTCATGACGCAGACTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     776815 33 +   1495729 GTCCTTCTTCCT--GGATACTCATGACGCAGACTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1       8950 33 -    811324 GTCCTTCTTCCT--GGATACTCATGACGCACACTC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30050185 33 -  71996105 GTCCTTCTTCCT--GGATACTCATGACGCAGACTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      44210 33 +    779361 GTCCTTCTTCCT--GGATACTCATGACGCAGACTC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     701917 33 -   1829203 GTCCTTCTTCCT--GGATACTCATGACGCAGACTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867157 33 + 171630274 GTCCTTCTTCCT--AGACACTCATGACGCAGATTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            33046 33 -    750284 GTCCTTCTTCCT--GGACACTCATGACACAGACTC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1284421 33 -   1771730 GTCCTTCTTCTT--GGACAATCATGACGCAGACTC
i cebCap1.NW_016107755v1   I 37611 C 0
s proCoq1.NW_012149775v1     636574 33 -   1411461 GTCCTTCTTCCT--GGATACTGCTGACGTAGCCCT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           631758 17 +  18854210 GTCCTTCCTCC------------------ACCTCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58954446 35 -  94987271 TTTCTCTTTCATAAAGACACAAATGATGCAGTCTC
i mm10.chr17               C 0 C 0
e aotNan1.NW_018496901v1     434384 35703 -    486031 T

a score=611247.000000
s hg38.chr6_GL000254v2_alt  1833469 53 +   4827813 AGTTCTCATTCCCAATGGG-TGTCGGGTTTCTAGAG-AAGCC----AATCAGCGTCGCC
s panTro5.chr6             30680221 53 + 175400573 AGTTCTCATTCCCAATGGG-TGTCGGGTTTCTAGAG-AAGCC----AATCAGCGTCGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104193 53 + 173848474 AGTTCTCATTCCCAATGGG-TGTCGGGTTTCTAGAG-AAGCC----AATCAGCGTCGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609531 53 +   2037526 AGTTCTCATTCCCAATGGG-TGTCGGGTTCCTAGAG-AAGCC----AATCAGCGTCGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75282494 43 + 122973662 AGTTCTCATTCCCAATGGG-TGTCGGGTTTCTAGAG-AAGCC----AAT----------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31197509 53 + 172585720 AGTTCTCATTCCCAATGGG-TGTCGGGTTTCTAGAG-AAGCC----AATCAGCGTCGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30481769 53 - 170955103 AGTTCTCATTCCCAATGGG-TGTCGGGTTTCTAGAG-AAGCC----AATCAGCGTCGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     776848 55 +   1495729 AGTTCTCATTCCCAATGGGCTGTCGGGTTTCGTGAGAAAGCC----AATCAGCGTCGCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1       8983 53 -    811324 AGTTCTCATTCCCAATGGG-TGTCGGGTTTCTAGAG-AAGCC----AATCAGCGTCGCC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30050218 53 -  71996105 AGTTCTCATTCCCAATGGG-TGTCGGGTTTCTGGAG-AAGCC----AATCAGCGTCGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      44243 53 +    779361 AGTTCTCATTCCCAATGGG-TGTCGGGTTTCTGGAG-AAGCC----AATCAGCGTCGCC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     701950 53 -   1829203 AGTTCTCATTCCCAATGGG-TGTCGGGTTTCTAGAG-AAGCC----AATCAGCGTCCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867190 51 + 171630274 AGTTCTCATTCCCAATGGG-TGTCGGGTTTCTAGAG-ACGCC----AATCAGCG--GCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            33079 55 -    750284 AGTTTTCGTTCCCATTGGG-TGTCGGATTTCTAGAG-AAGCCAATGAATGAACG--GCC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1284454 51 -   1771730 AATTCTCATTCCCATTGGG-TGTCGGGTTTCTAGAG-AAGCC----AATCAGCG--GCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     398681 53 -    486031 AGTTCTCATTCCCATTGGG-TGTCAGGTTTCTAGAG-AAGCC----AATCAGCGTCACT
i aotNan1.NW_018496901v1   T 35703 C 0
s proCoq1.NW_012149775v1     636607 52 -   1411461 GGTTCTCACTCCGATTGGG-TTTCTGTTTCC-AGGG-AAGCC----AATCAGCGTCGCC
i proCoq1.NW_012149775v1   C 0 I 81
s otoGar3.GL873550           631775 52 +  18854210 AGTTCTCATACCCATTGGG-TGTCGCGATTC-GAAG-AAGCC----AATCAGCATCTTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58954481 52 -  94987271 AATTCTCATTTCTGTTGGA-CGCCTAGTTTTCTAA--AAGCC----AATCAGCGACGCA
i mm10.chr17               C 0 C 0

a score=154642.000000
s hg38.chr6_GL000254v2_alt  1833522 22 +   4827813 ACG-ACTCCC--GACT---ATAAAGTCC
s panTro5.chr6             30680274 22 + 175400573 ACA-ACTCCC--GACT---ATAAAGTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104246 22 + 173848474 ACA-ACTCCC--GACT---ATAAAGTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609584 22 +   2037526 ACG-ACTCCC--GACT---ATAAAGTCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75282537 23 + 122973662 --G-ACTCCT--GACTATAATAAAGTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31197562 22 + 172585720 ACG-ACTCCC--GACT---ATAAAGTCC
i rheMac8.chr4             C 0 I 83
s macFas5.chr4             30481822 22 - 170955103 ACG-ACTCCC--GACT---ATAAAGTCC
i macFas5.chr4             C 0 I 5
s macNem1.NW_012012100v1     776903 21 +   1495729 AC--ACTCCCGAGACT---ATAAAGT--
i macNem1.NW_012012100v1   C 0 I 2
s cerAty1.NW_012002513v1       9036 22 -    811324 ACG-ACTCCC--GACT---ATAAAGTCC
i cerAty1.NW_012002513v1   C 0 I 72
s chlSab2.chr17            30050271 22 -  71996105 ACG-ACTCCC--GACT---ATAAAGTCC
i chlSab2.chr17            C 0 I 85
s manLeu1.NW_012106264v1      44296 22 +    779361 ACG-ACTCCC--GGAT---ATAAAGTCC
i manLeu1.NW_012106264v1   C 0 I 85
s colAng1.NW_012115577v1     702003 11 -   1829203 ACGCACTCAC--A---------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867241 22 + 171630274 ACG-ATTCTC--GACT---ATAAAGTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            33134 22 -    750284 ACA-ATTCTC--GACT---ATGAAGTCC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1284505 22 -   1771730 AGG-ATTCCC--GACT---ATAAAGTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     398734 22 -    486031 AAG-ATTCCC--GGCT---ATAAAGTCC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           631827 22 +  18854210 GCG-GTTCCT--AGTT---ATAAGGTCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58954533 22 -  94987271 GAG-GTCTCA--AAGT---ACGAAGTCA
i mm10.chr17               C 0 C 0
e proCoq1.NW_012149775v1     636659 81 -   1411461 I

a score=-3209.000000
s hg38.chr6_GL000254v2_alt  1833544 1 +   4827813 -C
s panTro5.chr6             30680296 1 + 175400573 -A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104268 1 + 173848474 -A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609606 1 +   2037526 -C
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75282560 1 + 122973662 -C
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30481849 1 - 170955103 -C
i macFas5.chr4             I 5 I 3
s macNem1.NW_012012100v1     776926 1 +   1495729 -C
i macNem1.NW_012012100v1   I 2 I 82
s calJac3.chr4             30867263 1 + 171630274 -C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            33156 1 -    750284 -C
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1284527 1 -   1771730 -C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     398756 1 -    486031 -C
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           631849 1 +  18854210 -C
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58954555 1 -  94987271 A-
i mm10.chr17               C 0 C 0
e proCoq1.NW_012149775v1     636659 81 -   1411461 I
e colAng1.NW_012115577v1     702014 0 -   1829203 C
e manLeu1.NW_012106264v1      44318 85 +    779361 I
e chlSab2.chr17            30050293 85 -  71996105 I
e cerAty1.NW_012002513v1       9058 72 -    811324 I
e rheMac8.chr4             31197584 83 + 172585720 I

a score=6343.000000
s hg38.chr6_GL000254v2_alt  1833545  3 +   4827813 CAT-------
s panTro5.chr6             30680297  3 + 175400573 CAT-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104269  3 + 173848474 CAT-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609607  3 +   2037526 CAC-------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75282561  3 + 122973662 CAC-------
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30481853  3 - 170955103 CAC-------
i macFas5.chr4             I 3 C 0
s calJac3.chr4             30867264  3 + 171630274 CAC-------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            33157  3 -    750284 CAC-------
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1284528  3 -   1771730 CAC-------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     398757  3 -    486031 CAT-------
i aotNan1.NW_018496901v1   C 0 I 74184
s otoGar3.GL873550           631850  3 +  18854210 CAC-------
i otoGar3.GL873550         C 0 I 8
s mm10.chr17               58954556 10 -  94987271 CAGGAATAGT
i mm10.chr17               C 0 C 0
e proCoq1.NW_012149775v1     636659 81 -   1411461 I
e colAng1.NW_012115577v1     702014  0 -   1829203 C
e manLeu1.NW_012106264v1      44318 85 +    779361 I
e chlSab2.chr17            30050293 85 -  71996105 I
e cerAty1.NW_012002513v1       9058 72 -    811324 I
e macNem1.NW_012012100v1     776927 82 +   1495729 I
e rheMac8.chr4             31197584 83 + 172585720 I

a score=70853.000000
s hg38.chr6_GL000254v2_alt  1833548 49 +   4827813 CCGGACTCAAGAAGTTCTCAG--GACTCA-GAGGCTG-GGATCATGGTAGATG-
s panTro5.chr6             30680300 50 + 175400573 CCGGACTCAAGAGGGTCTCAG--GACTCAAGAGGCTG-GGATCATGGTAGATG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104272 49 + 173848474 CCGGACTCAAGAGGGTCTCAG--GACTCA-GAGGCTG-GGATCATGGTAGATG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609610 49 +   2037526 CCGGACTCAAGACGTTCTCAG--GACTCA-GAGGCTG-GGATCATGATAGATA-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75282564 47 + 122973662 CCAGATTCAAGAGGCTCTCCG--GACTCT-GA--CTG-GGATCATGGCAGATG-
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30481856 49 - 170955103 CCGGATTCAGGAGGCTCTACC--GACTCA-GAGAATG-GGGTCATGGCACTAC-
i macFas5.chr4             C 0 C 0
s colAng1.NW_012115577v1     702014 48 -   1829203 -CGGATTCAGGAGGCTCTGCC--GACTCA-GAGGATG-GGATCATGGCACTAA-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867267 51 + 171630274 ACACCCTCGACTGGTTTTCCGCAGACACT-GAGGATG-GGGTCATGTCGCCCC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            33160 51 -    750284 ACACCCTAGACTAGTTCTCCACAGACGCA-GAGAATG-GAGTCATGCCTCCCC-
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1284531 51 -   1771730 ACTCCCTCGACTCGTTTTCCGCAGATACG-GAGGATG-GGGTCATGTCGTCCC-
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           631861 49 +  18854210 CCGGATTC-AGCGTCTCCCCA--GACCCC-TAGGATGAAGGTCACGGCGCCCC-
i otoGar3.GL873550         I 8 C 0
s mm10.chr17               58954566 49 -  94987271 CCTCATTC---AGGTTCCTCACAGACCCA-GGGGGTG-AGGATGTTGCTTTTTG
i mm10.chr17               C 0 C 0
e proCoq1.NW_012149775v1     636659 81 -   1411461 I
e aotNan1.NW_018496901v1     398760 74184 -    486031 I
e manLeu1.NW_012106264v1      44318 85 +    779361 I
e chlSab2.chr17            30050293 85 -  71996105 I
e cerAty1.NW_012002513v1       9058 72 -    811324 I
e macNem1.NW_012012100v1     776927 82 +   1495729 I
e rheMac8.chr4             31197584 83 + 172585720 I

a score=58183.000000
s hg38.chr6_GL000254v2_alt  1833597 14 +   4827813 GAACCCTCCTTTTA---
s panTro5.chr6             30680350 14 + 175400573 GAACCCTCCTTCTA---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104321 14 + 173848474 GAACCCTCCTTCTA---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609659 14 +   2037526 GAACCCTCCTTCTA---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75282611 14 + 122973662 GAACCCTCCTTTTA---
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30481905 14 - 170955103 GAACCCTACTTCTC---
i macFas5.chr4             C 0 C 0
s colAng1.NW_012115577v1     702062 14 -   1829203 GAACCCTACTTCTC---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867318 14 + 171630274 GAAGCCTCCTCTTG---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            33211 14 -    750284 GAAGCCTCCTCCTG---
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1284582 14 -   1771730 GAAGCCTCCTCCTG---
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     636740 14 -   1411461 GAACCCTCCTCCTG---
i proCoq1.NW_012149775v1   I 81 C 0
s otoGar3.GL873550           631910 14 +  18854210 GAACCCTCCTCCTG---
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58954615 14 -  94987271 ---CCCACTTGCTTCAG
i mm10.chr17               C 0 C 0
e aotNan1.NW_018496901v1     398760 74184 -    486031 I
e manLeu1.NW_012106264v1      44318 85 +    779361 I
e chlSab2.chr17            30050293 85 -  71996105 I
e cerAty1.NW_012002513v1       9058 72 -    811324 I
e macNem1.NW_012012100v1     776927 82 +   1495729 I
e rheMac8.chr4             31197584 83 + 172585720 I

a score=15363.000000
s hg38.chr6_GL000254v2_alt  1833611 3 +   4827813 CTC
s panTro5.chr6             30680364 3 + 175400573 CTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104335 3 + 173848474 CTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609673 3 +   2037526 CTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75282625 3 + 122973662 CTC
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30481919 3 - 170955103 CTG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1       9130 3 -    811324 CTG
i cerAty1.NW_012002513v1   I 72 C 0
s colAng1.NW_012115577v1     702076 3 -   1829203 CTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867332 3 + 171630274 CTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            33225 3 -    750284 CTG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1284596 3 -   1771730 CTG
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     636754 3 -   1411461 CTG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           631924 3 +  18854210 CTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58954629 3 -  94987271 CTG
i mm10.chr17               C 0 C 0
e aotNan1.NW_018496901v1     398760 74184 -    486031 I
e manLeu1.NW_012106264v1      44318 85 +    779361 I
e chlSab2.chr17            30050293 85 -  71996105 I
e macNem1.NW_012012100v1     776927 82 +   1495729 I
e rheMac8.chr4             31197584 83 + 172585720 I

a score=69645.000000
s hg38.chr6_GL000254v2_alt  1833614 16 +   4827813 CTCTCGGAGGCCCTGG
s panTro5.chr6             30680367 16 + 175400573 CTCTCGGAGGCCCTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104338 16 + 173848474 CTCTCGGAGGCCCTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609676 16 +   2037526 CTCTCGGAGGCCCTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75282628 16 + 122973662 CTCTTGGGGGCCCTGG
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30481922  7 - 170955103 CTCTCGG---------
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1       9133  7 -    811324 CTCTCGG---------
i cerAty1.NW_012002513v1   C 0 C 0
s colAng1.NW_012115577v1     702079  7 -   1829203 CTCTCGG---------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867335 16 + 171630274 CTCTCGGGAGCCCTAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            33228 16 -    750284 CTCTCGGGGGCCCTGG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1284599 16 -   1771730 CTCTCGGCAGCCCTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     472944 16 -    486031 CTCTCGGGAGCCCTGG
i aotNan1.NW_018496901v1   I 74184 C 0
s proCoq1.NW_012149775v1     636757 16 -   1411461 CTCTCGGGGGCCCTGG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           631927 16 +  18854210 CTCTCCGGGGTCCTGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58954632 16 -  94987271 CTGGTCAGCGCCACAG
i mm10.chr17               C 0 C 0
e manLeu1.NW_012106264v1      44318 85 +    779361 I
e chlSab2.chr17            30050293 85 -  71996105 I
e macNem1.NW_012012100v1     776927 82 +   1495729 I
e rheMac8.chr4             31197584 83 + 172585720 I

a score=1082171.000000
s hg38.chr6_GL000254v2_alt  1833630  99 +   4827813 CCCTTACCCAGACC----------TGGGCGGGTGAGTGC-GGGGTCGGGATGGAAACGGCCTCTACCGGGAGTAGAGAGGG-GCCGGC-CCGGCGGGGGCGAAGGACTCGGG
s panTro5.chr6             30680383  99 + 175400573 CCCTTACCCAGACC----------TGGGCGGGTGAGTGC-GGGGTCGGGATGGAAACGGCCTCTACCGGGAGTAGAGAGGG-GCCGGC-CCGGCGGGGGCGAAGGACTCGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104354  99 + 173848474 CCCTTACCCAGACC----------TGGGCGGGTGAGTGC-GGGGTCGGGATGGAAACGGCCTCTACCGGGAGTAGAGAGGG-GCCGGC-CCGGCGGGGGCGAAGGACTCGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609692  98 +   2037526 CCCTTACCCAGACC----------TGGGCGGGTGAGTGC--GGGTCGGGATGGAAATGGCCTCTACCGGGAGTAGAGAGGG-GCCGGC-CCGGCGGGGGCGAAGGACTCGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75282644  99 + 122973662 CCCTTACCCAGACC----------TGGGCGGGTGAGTGC-GGGGTCGGGATGGAAACGGCCTCTACCCGGAGTAGAGAGGG-GCTGGC-CCGGCGGGGGCGCAGGACTCGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31197667  99 + 172585720 CCCTTACCAAGACC----------TGGGCGGGTGAGTGC-GGGGTCGGGATGGAAGCGGCCTCTACCCGGAGGAGAGAGGG-GCCGGA-CCGGCGGGGGCGCAGGACTCGGG
i rheMac8.chr4             I 83 C 0
s macFas5.chr4             30481929  99 - 170955103 CCCTTACCAAGACC----------TGGGCGGGTGAGTGC-GGGGTCGGGATGGAAGCGGCCTCTACCCGGAGGAGAGAGGG-GCCGGA-CCGGCGGGGGCGCAGGACTCGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     777009  98 +   1495729 CCCTTACCAAGACC----------TGGGC-GGTGAGTGC-GGGGTCGGGATGGAAGCGGCCTCTACCCGGAGGAGAGAGGG-GCCGGA-CCGGCGGGGGCGCAGGACTCGGG
i macNem1.NW_012012100v1   I 82 C 0
s cerAty1.NW_012002513v1       9140  99 -    811324 CCCTTACCAAGACC----------TGGGCGGGTGAGTGC-GGGGTCGGGATGGAAGCGGCCTCTACCCGGAGGAGAGAGGG-ACCGGA-CCGGCGGGGACGCAGGACTCGGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30050378  99 -  71996105 CCCTTACCAAGACC----------TGGGCGGGTGAGTGC-GGGGTCGGGATGGAAGCGGCCTCTACCCGGAGGAGAGAGGG-GCCGGA-CCGGCGGGGGCGCAGGACTCGGG
i chlSab2.chr17            I 85 C 0
s manLeu1.NW_012106264v1      44403  99 +    779361 CCCTTACCAAGACC----------TGGGCGGGTGAGTGC-GGGGTCGGGATGGAAGCGGCCTCTACCCGGAGGAGAGAGGG-GCCGGA-CCGGCGGGGGCGCAGGACTCGGG
i manLeu1.NW_012106264v1   I 85 C 0
s colAng1.NW_012115577v1     702086  99 -   1829203 CCCTTACCGAGACC----------TGGGCGGGTGAGTGC-GGGGTCGGGATGGAAGCGGCCTCTACCCGGAGGAGAGAGGG-GCCGGA-CCGGCGGGGGCGCAGGACTCGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867351  97 + 171630274 CCCTGACCGACACC----------TGGGCGAGTGAGTGC-CGGGTGGGGAGGTAAACGGCCTCTGCGGGGAGGATTGAGGG---CCCC-CAGACCCGGGCTCAAGACCCGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            33244 100 -    750284 CCCTGACCGAGATC----------TGGGCAGGTGAGTGC-GGGGTGGGGAGTCAAACAGCCTCTGCGGGGAGGAGCCAGGGGGCCCCC-CAGACCCGGGCGCAGGGCCCGAG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1284615  99 -   1771730 CCCTGACCGAGACG----------TGGGCGCGTGAGTGC-CGGGTGGGGAGGAAAACGGCCTCTGCGGGGAGGAGCGAGGG-GCCCGC-CCCGCTGGAGTGCAGGACCCGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     472960  99 -    486031 CCCTGACCGAGACC----------TCGGCGAGTGAGTGC-GGGGTGGGGAGGAAAACGGCCTCTGCGGGGAGGAGCCAGGG-GCCCGC-CCGGCGGGGGCGCAGGACTCGAC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     636773  99 -   1411461 TCCTGACCGAGACC----------TGGGCGGGTGAGTGC-GGGGTCGGGAGGGAAGCGGCGTCTGCAGGGAGAAGCGAGGG-GACCGC-CCGGCGGTGGCGCAGGACGCGGG
i proCoq1.NW_012149775v1   C 0 I 75
s otoGar3.GL873550           631943  97 +  18854210 TCCTGACCGAGACC----------TAGGCGGGTGAGTGC-TGGCTC-GGAGGGAAACGGTCTCTGCAGGG-GTAGCCAGGG-GACGGC-CTGGCGGGGACGCAGGACCCAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58954648 111 -  94987271 TCCCGACCCAGAGTAGTAAgtgaggggaggggtgaggggaggggtTGGGAGCGAAAAAGACTCTGTGAGGAAAAGCGGGAG-GGTGGTGGTGGCGGAGGTGCAGCACCCCAA
i mm10.chr17               C 0 C 0

a score=274480.000000
s hg38.chr6_GL000254v2_alt  1833729 35 +   4827813 GAGCCGC-------------------------------------------GCCGGGAGGAG-GGTCGGGCCG-ATCTCAG
s panTro5.chr6             30680482 35 + 175400573 GAGCCGC-------------------------------------------GCCGGGTGGAG-GGTCGGGCCG-ATCTCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104453 35 + 173848474 GAGCCGC-------------------------------------------GCCGGGTGGAG-GGTCGGGCCG-ATCTCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609790 35 +   2037526 GAGCCGC-------------------------------------------GCCGGGAGGAG-GATCGGGCCG-ATCTCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75282743 35 + 122973662 GAGACGC-------------------------------------------GCCCGGAGGAA-GGTCGGGCCG-GTCTCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31197766 36 + 172585720 GAGCCGC-------------------------------------------GCGCAGGGAAGTGGCGGGACAG-TCCTCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30482028 35 - 170955103 GAGCCGC-------------------------------------------GCCGGGAGTAG-GGCCGGACCG-GTCTCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     777107 35 +   1495729 GAGCCGC-------------------------------------------GCCGGGAGTAG-GGCCGGACCG-GTCTCAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1       9239 35 -    811324 GAGCCGC-------------------------------------------GCCGGGAGTAG-GGCCGGACTG-GTCTCAG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30050477 35 -  71996105 GAGCCGC-------------------------------------------GCCCGGAGTAG-GGCCCGACAG-GTCTCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      44502 35 +    779361 GAGCCGC-------------------------------------------GCCCGGAGTAG-GGCCGGACCG-GTCTCAG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     702185 35 -   1829203 GAGCCGC-------------------------------------------GCCCGGAGTAG-GGCCGGACCG-GTCTCAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867448 35 + 171630274 GAACCGC-------------------------------------------GCTGGGAGGAA-GGTCGGGCGG-GTCTCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            33344 34 -    750284 GAGCTGG-------------------------------------------ACCCGGAGGAG-GGTC-GGCGG-GTCTCAG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1284714 34 -   1771730 GAGCCAC-------------------------------------------TCAGGGAGGAG-GGTC-GGCGG-ATCTCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     473059 35 -    486031 AAGCCCG-------------------------------------------GCCGGGAGGAG-GGTCGGGCGG-GTCTCAG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           632040 36 +  18854210 GACCCGC-------------------------------------------GCCGGGAGGAG-GGTCGGGCGGAGTCTCAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58954759 73 -  94987271 GTTCCGCCGCCCTGTCCTAGTCCCTCCCCCGCCTTTACCTGGGACCTTGAGCCTGGGGGA--GGTCGG---G-GTCTCA-
i mm10.chr17               C 0 C 0
e proCoq1.NW_012149775v1     636872 75 -   1411461 I

a score=3670549.000000
s hg38.chr6_GL000254v2_alt  1833764 276 +   4827813 CCCCTCCTCGCCCCCAGGCTCCCACTCCTTGAAGTATTTCCACACTTCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCTCT--GTGGGCTACGTGGACGACACCCAGTTCGTGCGCTTCGACAACGA-CGCCG-CGAGTCCGAGGATGGTGC-CGCGGGCGCCGTGGATGGAGCAGGAGGGGTCAGAGTATTGGGACCGGGAGACACGGAGC-GCCAGGGACACCGCACAGATTTTCCGAGTGAATCTGCGGACGCTG-CGC-GGCTA-CTACAATCA
s panTro5.chr6             30680517 276 + 175400573 CCCCTCCTTGCCCCCAGGCTCCCACTCCTTGAAGTATTTCCACACTTCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCTCT--GTGGGCTACGTGGACGACACCCAGTTCGTGCGCTTCGACAACGA-CGCCG-CGAGTCCGAGGATGGTGC-CGCGGGCGCCGTGGATGGAGCAGGAGGGGTCAGAGTATTGGGACCGGGAGACACGGAGC-GCCAGGGACACCGCACAGATTTTCCGAGTGAACCTGCGGACCCTG-CGC-GGGTA-CTACAATCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104488 276 + 173848474 CCCCTCCTCGCCCCCAGGCTCCCACTCCTTGAAGTATTTCCACACTTCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCTCT--GTGGGCTACGTGGACGACACCCAGTTCGTGCGCTTCGACAACGA-CGCCG-CGAGTCCGAGGATGGTGC-CGCGGGCGCCGTGGATGGAGCAGGAGGGGTCAGAGTATTGGGACCGGGAGACACGGAGC-GCCAGGGACACCGCACAGATTTTCCGAGTGAACCTGCGGACCCTG-CGC-GGGTA-CTACAATCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     609825 276 +   2037526 CCCCTCCTCGCCCCCAGGCTCCCACTCCTTGAAGTATTTCCACACTTCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCTCT--GTGGGCTACGTGGACGACACCCAGTTCGTGCGCTTCGACAACGA-AGCCG-CGAGTCCGAGGATGGTGC-CGCGGGCGCCGTGGATGGAGCAGGAGGGGTCAGAGTATTGGGACCGGGAGACACGGAGC-GCCAGGGACACCGCACAGATTTTCCGAGTGAACCTGCGGACCCTG-CGC-GGGTA-CTACAATCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75282778 276 + 122973662 CCCCTCCTCGCCCCCAGGCTCCCACTCCTTGAAGTATTTCCACACTTCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCTCT--GTGGGCTACGTGGACGACACCCAGTTCGTGCGCTTCGACAACGA-CGCCG-CGAGTCCGAGGATGGAGC-CGCGGGCGCCGTGGATGGAGCAGGAGGGGCCAGACTATTGGGACCGGGAGACACGGAGC-GCCAGGGACACCGCACAGACTTTCCGAGTGAACCTGCGGACCCTG-CGC-GGCTA-CTACAATCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31197802 285 + 172585720 CCCCTCCTCGCCCCCAGGCTCCCACTCCTTGAAGTATTTCCACACTTCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCTCCGGGTGGCCTACGTGGACGACACCCAGTTCGTGCGGTACGACAGCGACCGCCGCCGAGTCCGAGGGATGAGCGCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGAGGTATTGGGACCAGGAGACACGGAGCGGCCAGGGACACCGCACGGACTTTCCGAGTGAACCTGAAGACCCTGCCGCGGGCTACCTACAACCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30482063 276 - 170955103 CCCCTCCTCGCCCCCAGGCTCCCACTCCTTGAAGTATTTCCACACTTCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCTCC--GTGGGCTACGTGGACGACACCCAGTTCGTGCGGTACGACAGCGA-TGCCG-CGAGTCCGAGGATGGAGC-CGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAGC-GCCAGGGACACCGCACAGACTTTCCGAGTGAACCTGGAGACCCTG-CGC-GGCTA-CTACAACCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     777142 266 +   1495729 CCCTCTCGCCCCCCCAGGCTCCCACTCCTTGAAG--TTTCCACACTTCCGTGTTCCGGCGCCGGCGCGGGGAGCCCCGCTTCATCTCC--GTGGGCTACGTGGA-GACACCCAGTTCGTGCGGTACGACAGCGA-CGCCG-CGAGTCCGAGGAT-GAGC-CGCGGGCGCTGT-GATGAAGCAGGA-GGGCCGGAGTATTGGGACCAGGAGACACGGACC-GCCAGGAAC-CCGCACAGGC-TTCCGAGTGAACC--GGAACCCTG-CGC-GGCTA-CTACAACCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1       9274 276 -    811324 CCCCTCCTCGCCCCCAGGCTCCCACTCCTTGAAGTATTTCCACACTTCCGTGTCCCGGCCCGGCCGCGGGGGGCCCCGCTTCATCTCC--GTGGGCTACGTGGACGACACCCAGTTCGTGCGGTATGACAGCGA-CGCCG-CGAGTCCGAGGATGGAGC-CGCGGGCGCTGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAGC-GCCAAGGACACCGCACAGACTTTCCGAGTGAACCTGGATACCCTG-CGC-GGCTA-CTACAACCA
i cerAty1.NW_012002513v1   C 0 I 549
s chlSab2.chr17            30050512 276 -  71996105 CCCCTCCTCGCCCCTAGGCTCCCACTCCTTGAAGTATTTCCACACTTCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCTCC--GTGGGCTACGTGGACGACACCCAGTTCGTGCGGTTCGACAGCGA-TGCCG-CGAGTCCGAGGATGCAGC-CGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAGC-GCCAGGGACACCGCACAGACTTTCCGAGTGAACCTGAATACCCTG-CGC-GGCTA-CTACAACCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      44537 276 +    779361 CCCCTCCTCGCCCCCAGGCTCCCACTCCTTGAAGTATTTCCACACTTCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCTCC--GTGGGCTACGTGGACGACACCCAGTTCGTGCGGTACGACAGCGA-TGCCG-CGAGTCCGAGGATGCAGC-CGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAGC-GCCAAGGACACCGCACAGACTTTCCGAGTGAACCTGAAGACCCTG-CGC-GGCTA-CTACAACCA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     702220 276 -   1829203 CCCCTCCTTGCCCCCAGGCTCCCACTCCTTGAAGTATTTCCACACTTCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCTCC--GTGGGCTACGTAGATGACACCCAGTTCGTGCGGTTCGACAGCGA-CGCCG-CGAGTCCGAGGATGGAGC-CGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAATATTGGGACCAGGAGACACGGAGC-GCCAGGGACACCGCACAGACTTTCCGAGTGAACCTGAACACCCTG-CGC-GGCTA-CTACAACCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867483 276 + 171630274 CCCCTTCTCGCCCCCAGGCTCCCACTCCTTGAGGTATTTCCACACCTCCGTGTCCCGGCCCGGCCGCGGGGAGCCTCACTTCATCTCC--GTGGGATACGTGGACGACACGCAGTTCGTACGGTTCGACAGCGA-CGCCG-CGATTCCCAGGATGGAGC-CGCGGGCGCCGTGGATGGAGCAGCAGGGACAGGAGTATTGGGACCGGGAGACACGGAGC-GCCAGGGACACCGCACAGAGTTTCCGAGTGAACCTGCGGACCCTG-CTC-CGCTA-CTACAACCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            33378 276 -    750284 CCCGTCCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCCACACCTCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGATTCATCTCC--GTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGA-CGCCG-CGATTCCGAGGATGGAGC-CGCGGGCGCCGTGGATGGAGCAGCAGGGGCCGGAGTATTGGGAGAAGGAGACACAGAGA-GCCAGGGACACCGCACAGAGTTTCCGAGTGAACCTGCGGACCCTG-CTC-CGCTA-CTACAACCA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1284748 276 -   1771730 CCCCTTCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCCACACCTCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCACTTCATCTCC--GTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGA-CGCCG-CGATTCCGAGGATGGAGC-CGCGGGCGCAGTGGATGCAGAAGGAGGGGCCGGAGTATTGGGAGCGGGAGACACAGAGC-GCCAGGGACACCGCACAGGGTTTTCGAGTGAACCTTCGGACCCTG-CTC-CGCTA-CTACAACCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     473094 276 -    486031 CCCCTTCTCGCCCCCAGGCTCTCACTCCTTGAGGTATTTCCACACCTCCGTGTCCCGACCCGGCTGCGGGGAGCCCCACTTCATCTCC--GTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGA-CGCCG-CGATTCCGAGGATGGAGC-CGCGGGAGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGACACAGAGC-GCCAGGGACACCGCACAGAGTTTCCGAGTGAACCTGCGGACCCTG-CTC-CGCTA-CTACAACCA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     636947 276 -   1411461 cccctccccgcccccaggctcccactccATGAGGTATTTTTCTACCGCTGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCTAC--GTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGA-CGCCG-CGAGTCCGAGGGTGGAGC-CGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGACACGGAAG-GCCAAGGGCCACGCACAGACTGTCCGAGTGAACCTGCAGGCCCTG-CGC-GGCTA-CTACAACCA
i proCoq1.NW_012149775v1   I 75 C 0
s otoGar3.GL873550           632076 275 +  18854210 -CCCCTTTCGCCCCCAGGGTCACACTCTCTGCGGTATTTCCACACCTCTGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGAA--GTCGGCTACGTGGACAACACGCAGTTCGTGCGGTTTGACAGCTA-CGCGG-AGAATCCGAGGATGGAGC-CGCGGGCGCCGTGGATAGAGCGGGAGGGGCCGGAATATTGGGACGAGCAGACACGGCGC-GCCAAGGGCCACTCACAGACTTTCTGAGCGAACTTGAGGACCCTC-TGC-GGCTA-CTACAACCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58954832 276 -  94987271 CCGCGCGCCGCCCCCAGGCCCACACTCGCTGCGGTATTTCACCACCGCCGTGTCCCGGCCCGGCCTCGGGGAGCCCCGGTTCATCATT--GTCGGCTACGTGGACGACACGCAGTTCGTGCGCTTCGACAGCGA-CGCGG-AAAATCCGAGGATGGAGC-CTCGGGCGCGGTGGATTGAGCAGGAGGGGCCGGAGTATTGGGAGCGGGAGACTTGGAAA-GCCAGGGACATGGGGAGGAACTTCAGAGTAAACCTGAGGACCCTG-CTC-GGCTA-CTACAATCA
i mm10.chr17               C 0 C 0

a score=698697.000000
s hg38.chr6_GL000254v2_alt  1834040 60 +   4827813 GAGCGAGGCCGGTGAGTGACCCC-GGCCAGGGGAGC-AGGTCACGACCCCTCCCCATCCCCC
s panTro5.chr6             30680793 60 + 175400573 GAGCGAGGCCGGTGAGTGACCCC-GGCCAGGGGAGC-AGGTCACGACCCCTCCCCATCCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104764 60 + 173848474 GAGCGAGGCCGGTGAGTGACCCC-GGCCAGGGGAGC-AGGTCACGACCCCTCCCCATCCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     610101 60 +   2037526 GAGCGAGGCCGGTGAGTGACCCC-GGCCGGGGGAGC-AGGTCACGACCCCTCCCCATCCCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75283054 60 + 122973662 GAGCAAGGCCGGTGAGTGACCCC-GGCCAGGGGAGC-AGGTCACGACCCCTCCCCATTCCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31198087 60 + 172585720 GAGCGAGGCCGGTGAGTGACCCC-AGCCCGGGGCGC-AGGTCACGACCCCTCCCCATCCCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30482339 60 - 170955103 GAGCGAGGCCGGTGAGTGACCCC-AGCCCGGGGCGC-AGGTCACGACCCCTCCCCATCCCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     777408 56 +   1495729 GAGCGA-GCGCGTGAGTGACCCC--GCCTGGCGCAC--GGTCACGAACCCT-TCCATCCCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      10099 60 -    811324 GAGCGAGGCCGGTGAGTGACCCC-GGCCCGGGGCGC-AGGTCACGACCCCTCCCCATCCCTC
i cerAty1.NW_012002513v1   I 549 C 0
s chlSab2.chr17            30050788 60 -  71996105 GAGCGAGGCCGGTGAGTGACCCC-GGCCCGGGGCGC-CGGTCACGACCCCTCCCCATCCCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      44813 60 +    779361 GAGCGAGGCCGGTGAGTGACCCC-GGCCCGGGGCGC-AGGTCACGACCCCTCCCCATCCCTC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     702496 60 -   1829203 GAGCGAGGCCGGTGAGTGACCCC-GGCCCGGGGCGC-AGGTCACGACCCCTCCCCATCCCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867759 60 + 171630274 GAGCGAGGCCGGTGAGTGACCCT-GGCCCGGGGCGC-AGGTCACGACTCCCTCCCATCACCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            33654 60 -    750284 GAGCGAGGCCGGTGAGTGACTCT--GCCCGGGGCACAAGGTCACGACTCCCTCCCATCACCC
i saiBol1.JH378327         C 0 M 206
s cebCap1.NW_016107755v1    1285024 60 -   1771730 GAGCGAGGCCGGTGAGTGACCCC-GGCCCGGGGCGC-AGGTCACGACTCCTTCCCATCACCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     473370 60 -    486031 GAGTGAGGCCGGTGAGTGACCCT-GGCCCGGGGCGC-AGGTCACGACTCCCTCCCTTCACCC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     637223 61 -   1411461 GAGCGAGGCCGGTGAGTGACCCCGGGCTCGGGTCAC-AGGTCACGACCCCTCCCCACCCCGC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           632351 61 +  18854210 GAGCGAGGACGATGAGCGACCCCGGGCCCCGGGTGC-AGGTTAGGATTCCTCTCCGTCCCCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58955108 55 -  94987271 GAGTAACGACGGTGAGTG----C-GGCTGGGATCAC-AGCT-ATGATCACTCCATGTCCCCT
i mm10.chr17               C 0 C 0

a score=72467.000000
s hg38.chr6_GL000254v2_alt  1834100 8 +   4827813 ---ACGGACGG
s panTro5.chr6             30680853 8 + 175400573 ---ACGGACGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104824 8 + 173848474 ---ACGGACGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     610161 8 +   2037526 ---ACGGACGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75283114 8 + 122973662 ---ACGGACGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31198147 8 + 172585720 ---ACGGACAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30482399 8 - 170955103 ---ACGGACAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     777464 8 +   1495729 ---ACGGAAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      10159 8 -    811324 ---ACGGACAT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30050848 8 -  71996105 ---ACGGACAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      44873 8 +    779361 ---ACGGACAA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     702556 8 -   1829203 ---ACGGACAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867819 8 + 171630274 ---ACGGACGG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1285084 8 -   1771730 ---ACGGACGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     473430 8 -    486031 ---ACGGACGA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     637284 8 -   1411461 ---ACGGACGG
i proCoq1.NW_012149775v1   C 0 I 150
s otoGar3.GL873550           632412 8 +  18854210 ---ATGGACGG
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58955163 8 -  94987271 GAGACGGG---
i mm10.chr17               C 0 C 0
e saiBol1.JH378327            33714 206 -    750284 M

a score=507672.000000
s hg38.chr6_GL000254v2_alt  1834108 63 +   4827813 CGCGGGTCCCCTCGAATCTTCGGGTCCCAGATTCACCCCAAGGCTGCGGAACCCGCCCAGACC
s panTro5.chr6             30680861 63 + 175400573 CGCGGGTCCCCTCGAATCTTCGGGTCCCAGATTCACCCCAAGGCTGCGGAACCCGCCCAGACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104832 63 + 173848474 CGCGGGTCCCCTCGAATCTTCGGGTCCCAGATTCACCCCAAGGCTGCGGAACCCGCCCAGACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     610169 63 +   2037526 CGCGGGTCCCCTCGAATCTTCGGGTCCCAGATTCACCCCAAGGCTGCGGAACCCGCCCAGACC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75283122 63 + 122973662 CGCGGGTCCCCTCGAATCTTCGGGTCCCAGATTCACCCCAAGGCTGCGGAACCCGCCCAGACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31198155 63 + 172585720 CGTGGGTTCCCTCGAGTCTCAGGGTCCAAGATTCACCCCCAGGCTGTGGAACCCGCCCAGACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30482407 63 - 170955103 CGCGGGTCCCCTCGAGTCTCCGGGTCCGAGATTCACCCCCAGGCTGCGGAACCCGCCCAGACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     777472 59 +   1495729 CGTGGGTTCCCTCGAGTTCC--AGTCCAAGATTCCCCCCCAGG-TGTGGAACCCG-CCAGACC
i macNem1.NW_012012100v1   C 0 I 30
s cerAty1.NW_012002513v1      10167 63 -    811324 CGTGGGTTCCCTCGAGTCTCAGGGTCCAAGATTCACCCCCAGGCTGCGGAACCCGCCCAGACC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30050856 63 -  71996105 CGCGGGTCCCCTCGAGTCTCCGGGTCCGAGATTCACCCCCAGGCTGCGGAACCCGCCCAGACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      44881 63 +    779361 CGCGGGTCCCCTCGAGTCTCCGGGTTCGAGATTCACCCCCAGGCTGCGGAACCCGCCCAGACC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     702564 62 -   1829203 CGCGGGTCCCCTCAAGTCTCCGGGTCCAAGATTCA-CCCCAGGCTGCGGAACCCGCCCAGACC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867827 63 + 171630274 CCCGGGTGACCCCGAGTCTCCGGGTCCGAGGTCGACCCCGAGGCTGTGGGACCCTCCCAGACC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1285092 63 -   1771730 CCCGGGTCACCCCGAGTCTCCGGGTCCGAGGTCCACCCGGAGTCTGTGGGACCCGCCCAGACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     473438 63 -    486031 CCCGGTTCACCCTGAGTCTCCGGGTCCGAGGTCCACCCCGAGGCTGTGGGACCCGCCCAGACC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           632421 59 +  18854210 CCAGGGTCTTC-CAGGTCTCTAGATCGGAG-CTCATCTCGAG-CCGTGGGATTTA-CCGGACC
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58955171 55 -  94987271 CCTGGGTCATCTTGACCCGCTGAGACAAAGTTTCATCCAAACG--------CCTACCCAGAAC
i mm10.chr17               C 0 C 0
e proCoq1.NW_012149775v1     637292 150 -   1411461 I
e saiBol1.JH378327            33714 206 -    750284 M

a score=130315.000000
s hg38.chr6_GL000254v2_alt  1834171 27 +   4827813 CTAGA------------CCGGGGAGAGT----CTCAGGCGCCT----
s panTro5.chr6             30680924 27 + 175400573 CTCGA------------CCCAGGAGAGT----CTCAGGCGCCT----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104895 27 + 173848474 CTCGA------------CCCAGGAGAGT----CTCAGGCGCCT----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     610232 26 +   2037526 CTCGA------------CCCGGGAGAGT----CTCAGGCGCC-----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75283185 27 + 122973662 CTCCA------------CCCGCTAGAGT----CCCAGGCTCCT----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31198218 27 + 172585720 CTCGA------------CCCGGCAGAGT----CCCAGGCTCCT----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30482470 27 - 170955103 CTCGA------------CCCGGCAGAGT----CCCAGGCTCCT----
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      10230 27 -    811324 CTCGA------------CCCGGCAGAGT----CCCAGGCTCCT----
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30050919 27 -  71996105 CTCGA------------TCGGGCAGAGT----CCCAGGCTCCT----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      44944 27 +    779361 CTCGA------------CCCGGCAGAGT----CCCAGGCTCCT----
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     702626 27 -   1829203 CTCGA------------CCTGGCAGAGT----CCCAGGCTCCT----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867890 27 + 171630274 CTCGA------------CCTGGGCGAGC----CCGGGACGCCT----
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1285155 27 -   1771730 CTCGA------------CCTGGGCGAGC----CCCGGACGCGT----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     473501 27 -    486031 CTCGA------------CCTGGGCGAGA----CCCGGACACGT----
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           632480 39 +  18854210 CTTGAAGACTATTCAACCCTTGAAGAAT----TAGAAGAAGTT----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58955226 45 -  94987271 CTCAG--ACAAAAAAGCCCCCGCAGAGTTCTGCTTAGGTTTGGGGTT
i mm10.chr17               C 0 C 0
e proCoq1.NW_012149775v1     637292 150 -   1411461 I
e saiBol1.JH378327            33714 206 -    750284 M
e macNem1.NW_012012100v1     777531 30 +   1495729 I

a score=323891.000000
s hg38.chr6_GL000254v2_alt  1834198 45 +   4827813 -TTACCCGG-TTCTTTTTCAGTTTA-----------------GGCCAAAATGCCCACAGGGTGG
s panTro5.chr6             30680951 45 + 175400573 -TTACCCGG-TTCTTTTTCAGTTTA-----------------GGCCAAAATGCCCACAGGGTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104922 45 + 173848474 -TTACCCGG-TTCTTTTTCAGTTTA-----------------GGCCAAAATGCCCACAGGGTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     610258 45 +   2037526 -TTACCCGG-TTCTTTTTCAGTTTA-----------------GGCCAAAATGTCCACAAGGTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75283212 46 + 122973662 -TTACCCAGTTTCATTTTCAGTTTA-----------------GGCCAAAATCCCCACAGGTTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31198245 46 + 172585720 -TTACCCGGTTTCGTTTTCAGTTTA-----------------GGCCAAAATCCCTGCGGGTTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30482497 46 - 170955103 -TTACCCGGTTTCGTTTTCAGTTTA-----------------GGCCAAAATCCCTGCGGGTTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     777561 44 +   1495729 -TTACCCGGTTTCGTTTTCAGTTAT-----------------AGCCAAA--TCCTGCGGGTGGG
i macNem1.NW_012012100v1   I 30 C 0
s cerAty1.NW_012002513v1      10257 46 -    811324 -TTACCCGGTTTCGTTTTCAGTTTA-----------------GGCCACAATCCCTGCGGGTTGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30050946 46 -  71996105 -TTTCCCGGTTTCATTTTCGGTTTA-----------------GGCCAAAATCCCTGCGGGTTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      44971 46 +    779361 -TTACCCGGTTTCATTTTCAGTTTA-----------------GGCCAAAATCCCTGCGGGTTGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     702653 46 -   1829203 -TTACCCGGTTTCATTTTCAGTTTA-----------------GGCCAAAATCCCTGCGGGTTGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867917 44 + 171630274 -TTACCAGGTTTCATTTTCAGTTTA-----------------GGCCAAAATCCCCGCGGGTT--
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1285182 46 -   1771730 -TTACCAGGTTTCATTTTCAGTTTA-----------------GGCTAAAATCCCGGCGGGTTgg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     473528 46 -    486031 -TCACCAGGTTTCGTTTTCAGTTTA-----------------GGCCAAAATCCCCGCGGGTTGG
i aotNan1.NW_018496901v1   C 0 I 49
s otoGar3.GL873550           632519 40 +  18854210 -CCCTCCGATTTCTCTCTGGGTTGA-----------------AGTTGGA------GGGGGGTGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58955271 63 -  94987271 GTACTTTTGTTTCTCTTTTGTTTTGAGATATCTACTAACATTGGGCAAAGTGGCCACAGGTGG-
i mm10.chr17               C 0 C 0
e proCoq1.NW_012149775v1     637292 150 -   1411461 I
e saiBol1.JH378327            33714 206 -    750284 M

a score=43437.000000
s hg38.chr6_GL000254v2_alt  1834243 9 +   4827813 TGGCGACGG
s panTro5.chr6             30680996 9 + 175400573 TGGCGACGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104967 9 + 173848474 TGGCGACGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     610303 9 +   2037526 TGGCGACGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75283258 9 + 122973662 TGGCAACGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31198291 9 + 172585720 CGGCGACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30482543 9 - 170955103 CGGCGACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     777605 9 +   1495729 CGGCGACAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      10303 9 -    811324 CGGCGACAG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30050992 9 -  71996105 CGGCGACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      45017 9 +    779361 CGGCGACAG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     702699 9 -   1829203 CGGCGACAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867961 6 + 171630274 ---gggcgg
i calJac3.chr4             C 0 I 3
s cebCap1.NW_016107755v1    1285228 8 -   1771730 -cggggcgg
i cebCap1.NW_016107755v1   C 0 I 1
s otoGar3.GL873550           632559 8 +  18854210 -GGTCTGAG
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58955334 9 -  94987271 CGCTCATCA
i mm10.chr17               C 0 C 0
e proCoq1.NW_012149775v1     637292 150 -   1411461 I
e saiBol1.JH378327            33714 206 -    750284 M
e aotNan1.NW_018496901v1     473574 49 -    486031 I

a score=194313.000000
s hg38.chr6_GL000254v2_alt  1834252 29 +   4827813 GGGCGGGGCT---TGGTGGGCGGGACTGACTA
s panTro5.chr6             30681005 29 + 175400573 GGGCGGGGCT---TGGTGGGCGGGACTGACTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31104976 29 + 173848474 GGGCGGGGCT---TGGTGGGCGGGACTGACTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     610312 29 +   2037526 GGGCGGGGCT---TGGTGGGCGGGACTGACTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75283267 29 + 122973662 GGGCGGGGCT---CGGTGGGCGGGACTGACTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31198300 29 + 172585720 GGGCGGGGCT---CGGTGGGCGGGACTGACTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30482552 29 - 170955103 GGGCGGGGCT---CGGTGGGCGGGACTGACTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     777614 29 +   1495729 GGGCGGGGCT---CGGTGGGCGGGACTGACTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      10312 29 -    811324 GGGCGGGGCT---CGGTGGGCGGGACTGACTA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30051001 29 -  71996105 GGGCGGGGCT---CGGTGGGCGGGACTGACTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      45026 29 +    779361 GGGCGGGGCT---AGGTGGGCGGGGCTGACCG
i manLeu1.NW_012106264v1   C 0 I 1
s colAng1.NW_012115577v1     702708 29 -   1829203 GGGTGGGGCT---CGGTGGGCGGGACTGACTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867970 28 + 171630274 gggccggggg---tgg-ggacggggctgaccg
i calJac3.chr4             I 3 I 1
s saiBol1.JH378327            33928 29 -    750284 GGGCGGGGCT---CGGTGGGCGGGGCTGACAT
i saiBol1.JH378327         M 206 I 1
s cebCap1.NW_016107755v1    1285237 23 -   1771730 --gcgagg------gg-gggcggggctgaccg
i cebCap1.NW_016107755v1   I 1 I 1
s otoGar3.GL873550           632568 26 +  18854210 GAGCGCCGCTGACCGCGAGGCGGGGC------
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58955343 11 -  94987271 -------------------GCGTATCCCTT--
i mm10.chr17               C 0 C 0
e proCoq1.NW_012149775v1     637292 150 -   1411461 I
e aotNan1.NW_018496901v1     473574 49 -    486031 I

a score=3364.000000
s hg38.chr6_GL000254v2_alt  1834281 1 +   4827813 A
s panTro5.chr6             30681034 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31105005 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     610341 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75283296 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31198329 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30482581 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     777643 1 +   1495729 G
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      10341 1 -    811324 G
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30051030 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      45056 1 +    779361 G
i manLeu1.NW_012106264v1   I 1 C 0
s colAng1.NW_012115577v1     702737 1 -   1829203 G
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30867999 1 + 171630274 a
i calJac3.chr4             I 1 C 0
s saiBol1.JH378327            33958 1 -    750284 A
i saiBol1.JH378327         I 1 C 0
s cebCap1.NW_016107755v1    1285261 1 -   1771730 a
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018496901v1     473623 1 -    486031 A
i aotNan1.NW_018496901v1   I 49 C 0
e mm10.chr17               58955354 0 -  94987271 C
e proCoq1.NW_012149775v1     637292 150 -   1411461 I
e otoGar3.GL873550           632594 0 +  18854210 C

a score=605778.000000
s hg38.chr6_GL000254v2_alt  1834282 44 +   4827813 GGGGCGGGGCCAGGGTCTCACACCCTGCAGTGGATGCATGGCTG
s panTro5.chr6             30681035 44 + 175400573 GGGGCGGGGCCAGGGTCTCACACCCTGCAGTGGATGCATGGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31105006 44 + 173848474 GGGGCGGGGCCAGGGTCTCACACCCTGCAGTGGATGCATGGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     610342 44 +   2037526 GGGGCGGGGCCAGGGTCTCACACCCTGCAGTGGATGCATGGCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75283297 44 + 122973662 GGGGCGGGGCCAGGGTCTCACACCCTGCAGTGGATGCATGGCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31198330 44 + 172585720 CAGGCGGGGCCAGGGTCTCATACCCTCCAGTGGATGCATGGCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30482582 44 - 170955103 CGGGCGGGGCCAGGGTCTCATACCCTCCAGTGGATGCATGGCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     777644 44 +   1495729 CGGGCGGGGCCAGGGTCTCATACTCTCCAGTGGATGCATGGCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      10342 44 -    811324 CGGGCGGGGCTAGGGTCTCATACCCTCCAGTGGATGCATGGCTG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30051031 44 -  71996105 CGGGCGGGGCCAGGGTCTCATACCCTCCAGTGGATGCATGGCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      45057 44 +    779361 GGGGCGGGGCCAGGGTCTCATACCCTCCAGTGGATGCATGGCTG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     702738 44 -   1829203 CGGGCGGGGCCAGGGTCTCATACCCTCCAGTGGATGCACGGCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30868000 44 + 171630274 ggggcggggccagggTCTCACACCCTCCAGTGGCTGCATGGCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            33959 44 -    750284 GGGGCGGGGCCAGGGTCTCACACCCTCCAGTGGATGCATGGATG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1285262 44 -   1771730 ggggcggggcCAGGGTCTCACACCCTCCAGTGGATGCATGGCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     473624 44 -    486031 GGGGCGGGGTCAGGGTCTCACACCCTCCAGTGGATGCACGGCTG
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     637442 44 -   1411461 GGGGCGGGGCCAGGGTCTCACACACTCCAGTTGATGTACGGCTG
i proCoq1.NW_012149775v1   I 150 I 27
s otoGar3.GL873550           632594 44 +  18854210 GAGGAGGGGCCAGAGTCTGACACTCTGCAGTGGATGCACGGCTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58955354 35 -  94987271 ---------CCAGAATCTCACACGCTGCAGTGGATGTACGGCTG
i mm10.chr17               C 0 C 0

a score=118521.000000
s hg38.chr6_GL000254v2_alt  1834326 9 +   4827813 CGAGCTGGG
s panTro5.chr6             30681079 9 + 175400573 CGACCTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31105050 9 + 173848474 CGACCTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     610386 9 +   2037526 CGACCTGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75283341 9 + 122973662 CGACCTGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31198374 9 + 172585720 CGACCTGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30482626 9 - 170955103 CGACCTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     777688 9 +   1495729 CGACCTGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      10386 9 -    811324 CGACCTGGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30051075 9 -  71996105 CGACCTGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      45101 9 +    779361 CGACCTGGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     702782 9 -   1829203 CGACCTGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30868044 9 + 171630274 CGACGTGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            34003 9 -    750284 CGACCTGGG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1285306 9 -   1771730 CGACCTGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     473668 9 -    486031 CGACGTGGG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           632638 9 +  18854210 CGACGTGGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58955389 9 -  94987271 CGACGTGGG
i mm10.chr17               C 0 C 0
e proCoq1.NW_012149775v1     637486 27 -   1411461 I

a score=3020129.000000
s hg38.chr6_GL000254v2_alt  1834335 227 +   4827813 GCCCGACGGGCGCTTCCTCCGCGGGTATGAACAGTTCGCCTACGACGGCAAGGATTATCTCACCCTGAATGAGGACCTGCGCTCCTGGACCGCGGTGGACACGGCGGCTCAGATCTCCGAGCAAAAGTCAAATGATGCC-TCTGAGGCGGAGCACCAGAGAGCCTACCTGGAAGACACATGCGTGGAGTGGCTCCACAAATACCTGGAGAAGGGGAAGGAGACGCTGC
s panTro5.chr6             30681088 227 + 175400573 GCCCGACGGGCGCTTCCTCCGCGGGTATGAACAGTTCGCCTACGACGGCAAGGATTATCTCACCCTGAATGAGGACCTGCGCTCCTGGACCGCGGTGGACACGGCGGCTCAGATCTCCGAGCGAAAGTCAAATGATGCC-TGTGAGGCGGAGCACCAGAGAGCCTACCTGGAAGACACATGCGTGGAGTGGCTCCACAAATACCTGGAGAAGGGGAAGGAGACGCTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31105059 227 + 173848474 GCCCGACGGGCGCTTCCTCCGCGGGTATGAACAGTTCGCCTACGACGGCAAGGATTATCTCACCCTGAATGAGGACCTGCGCTCCTGGACCGCGGTGGACACGGCGGCTCAGATCTCCGAGCGAAAGTCAAATGATGCC-TGTGAGGCGGAGCACCAGAGAGCCTACCTGGAAGACACATGCGTGGAGTGGCTCCACAAATACCTGGAGAAGGGGAAGGAGACGCTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     610395 227 +   2037526 GCCCGACGGGCGCTTCCTCCGCGGGTATGAACAGTTCGCCTACGACGGCAAGGATTATCTCACCCTGAATGAGGACCTGCGCTCCTGGACCGCGGTGGACACGGCGGCTCAGATCTCCGAGCGAAAGTCAAATGATGCC-TGTGAGGCGGAGCACCAGAGAGCCTACCTGGAAGACACATGCGTGGAGTGGCTCCGCAAATACCTGGAGAAGGGGAAGGAGACGCTGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75283350 227 + 122973662 GTCCGACGGGAGCTTCCTCCGCGGGTATGAACAGTTCGCCTACGACGGCAAGGATTATCTCACCCTGAATGAAGACCTGCGCTCCTGGACCGCAGTGGACCCGGCGGCTCAGATCTCCGAGCGAAAGTCAAATGATGCC-TGTGAGGCGGAGCACCAGAGAGCCTACCTGGAAGACACATGCGTGGAGTGGCTCCGCAAATACCTGGAGAAGGGGAAGGAGACGCTGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31198383 227 + 172585720 GCCCGACGGGCGCTTCCTCCGCGGGTATGAACAGTTCGCCTACGACGGCAAGGATTATCTCACCCTGAATGAGGACCTGCGCTCCTGGTCCGCGGTGGACACGGCGGCTCAAATCTCCGAGCAAAAGTCAAATGATGGC-TCTGAGGCTGAGCACCAGAGAGCCTACCTGGAAGACACATGCGTGGAGTGGCTCCACAGATACCTGGAGAATGGGAAGGAGACGCTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30482635 227 - 170955103 GTCCGACGGGCGCTTCCTCCGCGGGTATGAACAGTTCGCCTACGACGGCAAGGATTATCTCACCCTGAATGAGGACCTGCGCTCCTGGTCCGCGATGGACACGGCGGCTCAGATCTCTGAGCAAAAGTCAAATGATGGC-GGTGAGGCGGAGCACCAGAGAGCCTACCTGGAAGACACATGCGTGGAGTGGCTCCGCAGATACCTGGAGAATGGGAAGGAGACGCTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     777697 227 +   1495729 GCCGGACGGGCGCTTCTTCCGCGGGTATGAACAGTTTGCCTACGACGGCAAGGATTATCTCACCCTGAATGAGGACCTGCGCTCCTGGTCCGCGGTGGACACGGCGGCTCAAATCTCCGAGCAAAAGTCAAATGATGGC-TCTGAGGCGGAGCACCAGAGAGCCTACCTGGAAGACACATGCGTGGAGTGGCTCCGCAGATACCTGGAGAATGGGAAGGAGACGCTGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      10395 228 -    811324 GCCCGACGGGCGCTTCCTCCGCGGGTATGAACAGTTCGCCTACGACGGCAAGGATTATCTCACCCTGAATGAGGACCTGCGCTCCTGGTCCGCGGTGGACACGGCGGCTCAGATCTCCGAGCGAAAGTCAAATGATGGCTTCTGAGGCGGAGCACCAGAGAGCCTACCTGGAAGACACATGCGTGGAGTGGCTCCGCAGATACCTGGAGAATGGGAAGGAGACGCTGC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30051084 227 -  71996105 GCCCGACGGGCGCTTCCTCCGCGGGTATGAACAGTTTGCCTACGACGGCAAGGATTATCTCACCCTGAATGAGGACCTGCGCTCCTGGTCCGCGGTGGACACGGCGGCTCAAATCTCCGAGCAAAAGTCAAATGATGGC-TCTGAGGCGGAGCACCAGAGAGCCTACCTGGAAGACACATGCGTGGAGTGGCTCCGCAGATACCTGGAGAATGGGAAGGAGACGCTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      45110 227 +    779361 GCCGGACGGGCGCTTCCTCCGCGGGTATGAACAGTTCGCCTACGACGGCAAGGATTATCTCACCCTGAATGAGGACCTGCGCTCCTGGTCCGCGGTGGACACGGCGGCTCAAATCTCTGAGCAAAAGTCAAATGATGGT-TCTGAGGCGGAGCACCAGAGAGCCTACCTGGAAGACACATGCGTGCAGTGGCTCCGCAGATACCTGGAGAATGGGAAGGAGACGCTGC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     702791 227 -   1829203 GCCGGACGGGCGCTTCCTCCGCGGGTATGAACAGTTCGCCTACGACGGCAAGGATTATCTCACCCTGAATGAGGACCTGCGCTCCTGGTCCGCGGTGGACACGGCGGCTCAGATTTCCGAGCGAAAGTCAAATGATGGC-TCTGAGGCGGAGCACCAGAGAGTCTACCTGGAAGACACATGCGTGGAGTGGCTCCGCAAATACCTGGAGAAGGGGAAGGAGACGCTGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30868053 227 + 171630274 GCCAGACGGGCGCTTCCTCCGCGGGTATGAACAGTTCGCCTACGATGGCAAGGATTACCTCACCTTGAACGAGGACCTGCGCTCCTGGACCGCAGCGGACACCGCGGCTCAGATCTCCCAGCGCAAGTCAGAGGAGGCC-TGTGAGGCGGAGCACCAAAGAGCCTACCTGGAGGACACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            34012 227 -    750284 GCCCGACGGGCGCTTCCTCCGTGGGTATGAACAGTTCGCCTACGACGGCAGCGATTACCTCACCTTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACCGCGGCTCAGATCTCCCAGCGCAAGTCAGAGGAGACC-GGTGAGGCGGACCACCAAAGAGCCTACCTGGAGGACACGTGCGTGGAGTGGCTCCACACATACCTGGAGAAAGGGAAGGAGACGCTGC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1285315 227 -   1771730 GTCCGACGGGCGCTTCCTCCGCGGGTATGAACAGTTCGCCTACGACGGCAACGATTACCTCACCTTAAACGAGGACCTGCGTTCCTGGACCGCGGCCGACACCGCGGCTCAGATCTCCAAGCGCAAGTCAGAGGAGGCC-GGTGAGGCGGAGCACCAAAGAGCCTACCTGGAGGACACGTGCGTGGAGTGGCTTCTCAGACACCTGGAGAACGGGAAGGAGACGCTGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     473677 227 -    486031 GCCCGACGGGCGCCTTTTCCGCGGGTATGAACAGTTCGCCTACGACGGCACCGATTACCTCACCTTGAATGAGGACCTGCGCTCCTGGACCGCGGCGGACACCGCGGCTCAGATCTCCCAGCGCAAGGCAGAGGAGGCC-TGTGAGGCAGAACACCAAAGAGCCTACTTGGAGGGCAAGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     637513 227 -   1411461 GCCCGACGGTCGCCTACTCCGCGGGTACTGGCAATACGCCTACGACGGCGCCGACTACCTCTCCCTGAACGAGGACCTGCGTTCCTGGACCGCGGCGGACACCGCGGCTCAGATCTCCAAGCGCAAAGCCGAGGAGGCC-GGTGATGCGGAGCACCAGAGGGCCTACCTGGAGGGAACGTGCGTGGACTGGCTCCGCAGATACCTGGAGCACGGGAAGGACACGCTGC
i proCoq1.NW_012149775v1   I 27 I 331
s otoGar3.GL873550           632647 227 +  18854210 ACCGGACGGGCGCTTCCTCCGCGGGTACGAGCAGGTCGCCTACGATGATGCGGATTATCTCTTCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGAACCCAGCAGCTCAGATCTCAAAGCACAAATCAGATATGACT-GGTGAGGCGGAGTTCCAGAGGGCCTACCTGGAGGAAGAATGCGTGGAGTGGCTCCGCAGATACCTGGACAGCGGGAAGGACGCGCTGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58955398 227 -  94987271 GCCCGATGGGCGCCTGCTCCGCGGGTATTGTCAGGAGGCCTACGATGGCCAGGATTACATCTCCCTGAACGAGGACCTGCGTTCCTGGACCGCGAATGACATAGCCTCACAGATCTCTAAGCACAAGTCAGAGGCAGTC-GATGAGGCCCACCAACAGAGGGCATACCTGCAAGGTCCTTGCGTGGAGTGGCTCCATAGATACCTACGGCTGGGAAATGAGACACTGC
i mm10.chr17               C 0 C 0

a score=3114886.000000
s hg38.chr6_GL000254v2_alt  1834562 326 +   4827813 TTCACCTGGGTAAGAGGGTCCACAGGGCTACTCTCCCAACTCCTTCTTGGGCTAGGACTGTGCC-CAC----AGCTGACAGACC----------T-CAAAC------------------AGTAGAAGAAACAGGGATGGAGGCCAGAATACCACTCCTCCCTTGGATCAGGAGAGGGAGCTGTCACCTGAGGTACAGGAGATCCTATACCACAGAGTGACTCTCTTAAAGGGCCAG-ACCTCTCTCAGGGGCAATTAAGGAATCTAGTCTCGCTG----------GAGATTCC-ATCCTTCAGATGAACTGA-------TGAG------CAGTTCTCTTTGACTCCCAGTATTAGGAATCACGGGGGAGTTTCTCTCGTGCCTGA
s panTro5.chr6             30681315 326 + 175400573 TTCACCTGGGTAAGAGGGTCCACAGGGCTACTCTCCCATCTCCTTCTTGGGCTAGGACAGTGCG-CAC----AGCTGACAGACC----------T-CAAAC------------------AGTAGAAGAAACAGGGATGGAGGCCAGAATACCACTCCTCCCTTGGATCAGGAGAGGGAGCTGTCACCTGAGGTACAGGAGATCCTATACCACAGAGTGACTCTCTTAAAGGGCCAG-CCCTCTCTCAGGGGCAATTAAGGAATCTAGTCTCGCTG----------GAGATTCC-ATCCTTCAAATGAACTGA-------TGAG------CAGTTCTCTTTGACTCCCAGTATTAGGAATCACGGGGGAGTTTCTCTCGTGCCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31105286 326 + 173848474 TTCACCTGGGTAAGAGGGTCCACAGGGCTACTCTCCCATCTCCTTCTTGGGCTAGGACTGTGCG-CAC----AGCTGACAGACC----------T-CAAAC------------------AGTAGAAGAAACAGGGATGGAGGCCAGAATACCACTCCTCCCTTGGATCAGGAGAGGGAGCTGTCACCTGAGGTACAGGAGATCCTATACCACAGAGTGACTCTCTTAAAGGGCCAG-CCCTCTCTCAGGGGCAATTAAGGAATCTAGTCTCGCTG----------GAGATTCC-ATCCTTCAAATGAACTGA-------TGAG------CAGTTCTCTTTGACTCCCAGTATTAGGAATCACGGGGGAGTTTCTCTCGTGCCTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     610622 326 +   2037526 TTCACCTGGGTAAGAGGGTCCACAGGGCTACTCTCCCATCTTCTTCTTGGGCTAGGACTGTGCC-CAC----AGCTGACAGACC----------T-CAAAC------------------AGTAGAAGAAACAGGGATGGAGGCCAGAATACCACTCCTCCCTTGGATCAGGAGAGGGAGCTGTCACCTGAGGTACAGGAGATCCTATACCACAGAGTGACTCTCTTAAAGGGCAAG-CCCTCTCTCAGGGGCAATTAAGGAATCTAGTCTCGCTG----------GAGATTCC-ATCCTTCAAATGAACTGA-------TGAG------CAGTTCTCTTTGACTCCCAGTATTAGGAATCATGGGGGAGTTTCTCTCGTGCCTGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75283577 326 + 122973662 TGCGCTCGGGTAAGAGGGTCCACAGGGCTACTCTCCCATCTCCTTCTTGGTCTAGGACTGTGCC-CAC----AGCTGACAGACC----------T-CAAAT------------------AGTAGAAGAAACAGGGATGGAGGCCAGAATACCGCTCCTCCCTTAGATCAGGAGAGGGAGCTGTCACCCCAGGTGCAGGAGATCCTATCCCACAGAGTGACTCTCTTAAAGGGCCAG-CCCTCTCTCAGGGGCAATTAAGGAATCTAGTCTCGCTG----------GAGATTCC-ATCCTTCAAATGAACTGA-------TGAG------CAGTTCTCTTTGACTCCCAGTGTTAGGAATCATGGGGGAGTTTCTCTCGTGCCTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31198610 326 + 172585720 AGCGCTCAGGTAAGAGGGTCCACAGGGCTACTCTCCCATCTCCTTCTTGGGCTAGGACTGTGCC-CAC----AGCTGACAGACC----------T-CAAAC------------------AGTAGAAGACGCAGGGATGGAAGCCAGAATACCCCTCCTGCCTTGGATCAGGAGAGGGGGCTGTCACCCCAGGTACAGGAGATCCTGTACCAGAGAGTGACTCTCTTAAATGACCAG-CCTTCTGTCAGGGACAATTAAGGAATCTAGTCCCGCTG----------GAGAGTCC-ATTCTTCAAATGAACTGA-------TGAG------CAGTTCTCTTTGACTCTCAGTGTTAGGAATCATGGGGGAGTTTCTCTCGTGCCTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30482862 326 - 170955103 AGCGCTCGGGTAAGAGGGTCCGCAGGGCTACTCTCCCATCTCCTTCTTGGGCTAGGACTGTGCC-CAC----AGCTGACAGACC----------T-CAAAC------------------AGTAGAAGACGCAGGGATGGAAGCCAGAATACCCCTCCTCCCTTGGATCAGGAGAGGGGGCTGTCACCCCAGGTACAGGAGATCCTGTACCAGAGAGTGACTCTCTTAAATGACCAG-CCTTCTCTCAGGGACAATTAAGGAATCTAGTCTCGCTG----------GAGAGTCC-ATTCTTCAAATGAACTGA-------TGAG------CAGTTCTCTTTGACTCTCAGTGTTAGGAATCATGGGGGAGTTTCTCTCGTGCCTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     777924 326 +   1495729 TGCGCTCGGGTAAGAGGGTCCGCAGGGCTACTCTCCCATCTCCTTCTTGGGCTAGGACTGTGCC-CAC----AGCTGACAGACC----------T-CAAAC------------------AGTAGAAGACGCAGGGATGGAAGCCAGATTACCCCTCCTCCCTTGGATCAGGAGAGGGGGCTGTCACCCCAGGTACAGGAGATCCTGTACCAGAGAGTGACTCTCTTAAATGACCAG-CCTTCTCTCAGGGACAATTAAGGAATCTAGTCTCGCTG----------GAGAGTCC-ATTCTTCAAATGAACTGA-------TGAG------CAGTTCTCTTTGACTCTCAGTGTTAGGAATCATGGGGGAGTTTCTCTCGTGCCTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      10623 325 -    811324 AGCGCTCGGGTAAGAGGGTCCGCAGGGCTACTCTCCCATCTCCTTCTTGGGCTAGGACTGTGCC-CAC----AGCTGACAGACC----------T-CAAAC------------------AGTAGAAGACACAGGGATGGAAGCCAGAATACTCCTCCT-CCTTGGATCAGGAGAGGGGGCTGTCACCCCAGGTACAGGAGATCCTGTACCAGAGAGTGACTCTCTTAAATGACCAG-CCTTCTCTCAGGGACAATTAAGGAATCTAGTCCCGCTG----------GAGAGTCC-ATTCTTCAAATGAACTGA-------TGAG------CAGTTCTCTTTGACTCTCAGTGTTAGGAATCATGGGGGAGTTTCTCTCGTGCCTGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30051311 326 -  71996105 AGCGCTCGGGTAAGAGGGTCCGCAGGGCTACTCTCCCATCTCCTTCTTGGGCTAGGACTGTGCC-CAC----AGCTGACAGACC----------T-CAAAC------------------AGTAGAAGACGCAGGGACGGAAGCCAGAATACCCCTCCTCCCTTGGATCAGGAGAGGGGGCTGTCACCCCAGGTACAGGAGATCCTGTACCAGAGAGTGACTCTCTTAAATGACCAG-CCTTCTCTCAGGGACAATTAAGGAATCTAGTCCCGCTG----------GAGAGTCC-ATTCTTCAAATGAACTGA-------TGAG------CAGTTCTCTTTGACTCTCAGTGTTAGGAATCATGGGGGAGTTTCTCTCGTGCCTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      45337 326 +    779361 AGCGCTCGGGTAAGAGGGTCCGCAGGGCTACTCTCCCATCTCCTTCTTGGGCTAGGACTGTGCC-CAC----AGCTGATAGACC----------T-CAAAC------------------AGTAGAAGACGCAGGGATGGAAGCCAGAATACCCCTCCTCCCTTGGATCAGGAGAGGGGGCTGTCACCCCAGGTACAGGAGATCCTGTACCAGAGAGTGACTCTCTTAAATGACCAG-CCTTCTCTCAGGGACAATTAAGGAATCTAGTCCCGCTG----------GAGAGTCC-ATTCTTCAAATGAACTGA-------TGAG------CAGTTCTCTTTGACTCTCAGTGTTAGGAATCATGGGGGAGTTTCTCTCGTGCCTGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     703018 324 -   1829203 AGCACCCGAGTAAGAGGGTCCACAGGGCTACTCTCCCATCTCCTTCTTGGGCTAGGACTGTACC-CAC----AGCTGACAGACC----------T-CAAAC------------------AGTAGAAGACACAGGGATGGAAGCCACAATACCCCTCCTCCCTTGGATCAGGAGAGGGGGCTGTCACCCCAGGTACAGGAGATCCTGTACCAGAGAGTGACTCTCTTAAATGACCAG-CTTTCTCTCAGGGACAATTAAGGAATCTAGTCTCGCTG----------GAGAGTCC-ATTCTTCAAATGAACTGA-------TGAG------CAGTTCTCTTTGA--CTCAGTGTTAGGAATCATGGGAGAGTTTCTCTCGTGCCTGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30868280 323 + 171630274 AGCGTGCGGGTTAGAGGAGCCACAGGGCAACTCTCTCATCTCCTTCTTGGGCTGGGACTGTGCC-CAC----AGCTGACAGACC----------T-CAAAG------------------AGTAGAAGAAACAGGGATGGAAGCCAGAATACCCCTTGTTCCTTGGATCAGGAGAGGGAGTGGTCACCCTGGGTACAGGAGATCCTGTACTAGAGAGTGGCTCTCTTAAAGGGCCAG-CCCCCTCTCAGGAGCAATTAAGGAATCTAATGTC---C----------GAGATTCC-ATCCCTCAAATGAACTGC-------TCAG------CAGTTCTCTTTGACTCCCTGTGTTAGGGATCATAGGGGACTTTTTCTCCTGCCTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            34239 329 -    750284 AGCGTGCGGGTAAGAGGGGACACAGGGCAACTCTCCCATCTCCTTCTTGGGCTGGGACTGTGCC-CAC----AGCTGACA-ACT----------C-AAAAA------------------AGTAGAAGAAACAGGGATGGAGGCCAGAATACCCCTTGCTCCTTGGATCAGGAGACGGAGCTGTCACCCTGGGAACAGGAGATCCTATACCAAAGAGTGA--CTCTTAAAGAGCCAG--CCCTTCTCAGGGGCAATTAAGGAATCCAGTCTCGCTG----------GAGAGTCC-ATCCTTCAAATGAACTGTGAACTGATCAG------CAGTTCTCCTTGACTCCCAGTGTTAGGGATCATGGGGGACTTTCTCTCCTGCCTGG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1285542 320 -   1771730 AGCGCGCGGGTAAGATGGGCCACAGGGCAACGCTCCCTTCTCCTTCTTGGACTTGGACTGTGCC-CAC----AGCTGACAGACC----------T-CAAAG------------------AGTAGAAGAAACAGTGATGGAAGCCAGAATACCCCTTGTTCCTTGGATCAGGAGAGGGAGCTGTCACCCTGGGTACAGGAGATCCTGTACTAAAGAGTGA--CTCTTAAAGTGCCAG--CCCCTCTCAGGGGCAATTAAGGACTCTAATGTC---G----------GAGATTCC-ATCCTTCAAATGAACTGA-------TCAG------CAGTTCTCTTTGACTCCCAGTGTTAGGGATCTTGGGGGACTTTCTCTCCTGCCTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     473904 353 -    486031 AGCGTGCGGGTAAGAGGGGCCACAGAGCAAATCTCCCATCTCCTCCTTGGGCTGGGACTGTGCCACACAAAAAGCTTGAAAACCAGACCCCCCTT-CAAAGAAGGAAAAAAAAAGCCATAGGAAAAGAAACAGGGATGGAGGCCAGAATGCCCCTTGTTCCTTGGATCAGGAGAGGGAGCTGTCACCCTGTGTACAGGAGATCCTGTACCAAAGAGTGA--CTCTTAAAGGGCCAG--CCCCTCTCAGGGGCAATTAAGGAATCTAGTGTC---G----------GAGATTCC-ATCCTTCAAATGAACTGA-------TCAG------CAGTTCGCTTTGACTCCCAGTGTTAGGGATCATGGGGGACTTTCTCTCCTGCCTGG
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           632874 313 +  18854210 AGCGCTCGGGTACGAGGGACTTGGGG--------CCCATCTCCT--TTGACCAGGGGCTGTGCC-AGT----AGCCAGCAGCCC----------TCCAGAA------------------AGTGGAGGAAAATAGGACAGA-GCCAATATATCGCTCCTCGCTGGAATCGGGAGAGGAAGT--CCACTTGGGTTTC--TTGATTCTGTACCAGAGCGCGCCTCACCCAAAGGGCCTGCCCTTCTCTGAGAGGCAATTAAGGAATCCAGTCTCTCTGAGGATGCACAGGGAGACC-ACCCTTGAAAT-AACTCA-------TCAG------CGGTTCTCTTTGTCTC----TGCCAGCAATCCCTAGGGA----CTTTCAGGCCTT-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58955625 234 -  94987271 AGCGCTCAGGT-----GCCCTGGAGAGCTCTCCTCACTTTTCCTCTGCGGTTTGGGGGAAATCC-TTG----AGGTAT--AACC----------T-CAGGG------------------G-----------------------CAGAACGCTGTTC---------------AGCGGGCACAG-----CGCGGAGGAGGAG----------GGAGAGGGACTCCCAAAA-----CTG-CTTTTCCCCTG-------------------------TA----------GGGATTCTAATCCTTAACAAAAGCAGA-------TCAGGCTCGACAATGGCCCTGGACCCATGG----GGGGA-----GGGGGCTCTTTCTCAGGCCTCC
i mm10.chr17               C 0 C 0
e proCoq1.NW_012149775v1     637740 331 -   1411461 I

a score=618382.000000
s hg38.chr6_GL000254v2_alt  1834888 51 +   4827813 TTCTCAGCCCCACACCAAGAGTTTTTGGAGGTCTGACTCCAGCTTTTCTCA
s panTro5.chr6             30681641 51 + 175400573 TTCTCAGCCCCACACCAAGAGTTTTTGGAGGTCTGACTCCAGTTTTTCTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31105612 51 + 173848474 TTCTCAGCCCCACACCAAGAGTTTTTGGAGGTCTGACTCCAGTTTTTCTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     610948 51 +   2037526 TTCTCAGCCCCACACCAAGAGTTTTTGGAGGTCTGACTCCAGCTTTTCTCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75283903 51 + 122973662 TTCTCAGCTGCACACCAAGAATTTTTGGAGGTCTGACTCCAGCTTTTCTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31198936 51 + 172585720 TTCTCAGCCCCACACCAAGAGTTTTTGGAGGTCTGACTCCAGCTTTTCTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30483188 51 - 170955103 TTCTCAGCCCCACACCAAGAGTTTTTGGAGGTCTGACTCCAGCTTTTCTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     778250 51 +   1495729 TTCTCAGCCCCACACCAAGAGTTTTTGGAGGTCTGACTCCAGCTTTTCTCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      10948 51 -    811324 TTCTCAGCCCCACACCAAGAGTTTTTGGAGGTCTGACTCCAGCTTTTCTCA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30051637 49 -  71996105 TTCTCAGCCCCACACC--GAGTTTTTGGAGGTCTGACTCCAGCTTTTCTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      45663 51 +    779361 TTCTCAGCCCCACACCAAGAGTTTTTGGAGGTCTGACTCCAGCTTTTCTCA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     703342 51 -   1829203 TTCTCAGCCCCACACCAAGAGTTTTTGGAGGTGTGACTCTAGCTTTTCTCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30868603 51 + 171630274 TTCTCAGCCCCATACCAAGCATCTTTGGAGATTTGACTTCAGCATTTCTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            34568 51 -    750284 TTCTCAGCCCCACACCAAGCGTCTTTGGAGGTCTGACTTCAGCTTTTCTCA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1285862 51 -   1771730 TTCTCAGCCCCACACCAAGTGTCTTTGCAGGTCTGACACTAACTTTTCTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     474257 51 -    486031 TTCTCAGCCCCACACCAAGTGTCTGTGGAGGTTTGACTTCAGCTTTTCTCA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     638071 51 -   1411461 TTCTCTGCCCCACACCCAGCATCTCTGGAAGTCTGACTCCAGCTTTTCTCA
i proCoq1.NW_012149775v1   I 331 I 60
s otoGar3.GL873550           633187 50 +  18854210 TTCTCTGCCCAGC-TCCTGTATCTCTCAAAGTCTCACCCTTGCTTTTCTAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58955859 48 -  94987271 CTCCTTGCCCTACTC--AGTGTCTCTATA-GTCAGACTCCAGCTTTTCTCA
i mm10.chr17               C 0 C 0

a score=483681.000000
s hg38.chr6_GL000254v2_alt  1834939 44 +   4827813 GT-CACTCAGCATCCACACAGGCCAGGACCAGAAATCCCTTTT------CA
s panTro5.chr6             30681692 44 + 175400573 GT-CACTCAGCATCCACACAGGCCAGGACCAGAAATCCCTTTT------CA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31105663 44 + 173848474 GT-CACTCAGCATCCACACAGGCCAGGACCAGAAATCCATTTT------CA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     610999 44 +   2037526 GT-CACTCAGCATCCACACAGGCCAGGACCAGAAATCCCTTTT------CA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75283954 44 + 122973662 GT-CACTCAGCATCCACACAGGCCAGGACCCGAAATCCCTTTT------CA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31198987 44 + 172585720 GT-CACTCAGCATCCGCACAGGCCAGGACCAGAAATCCCTTTT------CA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30483239 44 - 170955103 GT-CACTCAGCATCCGCACAGGCCAGGACCAGAAATCCCTTTT------CA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     778301 44 +   1495729 GT-CATTCAGCATCCGCACAGGCCAGGACCAGAAATCCCTTTT------CA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      10999 44 -    811324 GT-CACTCAGCATCCGCACAGGCCAGGACCAGAAATCCCTTTT------CA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30051686 44 -  71996105 GT-CACTCAGCATCCGCACAGGCCAGGACCAGAAATCCCTTTT------CA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      45714 44 +    779361 GT-CACTCAGCATCCGCACAGGCCAGGACCAAAAATCCCTTTT------CA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     703393 44 -   1829203 GT-CACTCAGCATCCGCACAGGCCAGGACCAGAAATCCCTTTT------CA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30868654 43 + 171630274 GT-CACTCAGCATCTGCTCAGGCCAAAACCAGAAA-TCCCTTT------CA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            34619 44 -    750284 GT-CACTCAGCATCCACTCAGGCCAGAACCAGAAATTCCTTTT------CT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1285913 44 -   1771730 AT-AATTCAGCATCCACTCAGGCCAGAACCAGAAATCCCTTTT------CA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     474308 44 -    486031 GT-CACTCAGCATCCGCTCACGCCAGGACCAGAAATCCCTTTT------CA
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           633237 51 +  18854210 GTGAACTCGGACTCCACCCAGGTCAGGACCACAAGTCCTCCTTGTCCGCCA
i otoGar3.GL873550         C 0 I 13
s mm10.chr17               58955907 43 -  94987271 AT-CTCTTGGCCCTCATCCAGCTCAGGACCAGAAG-CCCTTCC------CA
i mm10.chr17               C 0 I 21
e proCoq1.NW_012149775v1     638122 60 -   1411461 I

a score=900014.000000
s hg38.chr6_GL000254v2_alt  1834983 70 +   4827813 CCTTCTACCCTGGGCTAGCTCATCCCGATTCTAGAACTTTCCAAGGAATAAGAGGCTATCCCAGATCCCT
s panTro5.chr6             30681736 70 + 175400573 CCTTCTACCCTGGGCTATCTCATCCCGATTCTAGAACTTTCCAACGAATAAGAGGCTATCCCAGATCCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31105707 70 + 173848474 CCTTCTACCCTGGGCTATCTCATCCCGATTCTAGAACTTTCCAACGAATAAGAGGCTATCCCAGATCCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     611043 70 +   2037526 CCTTCTACCCTGGGCTATCTCATCCCGATTCTAGAACTTTCCAACGAATAAGAGGCTATCCCAGATCCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75283998 70 + 122973662 CCTTCTACCCTGGGCTATTTCACCCCGATTCTAGAACTTTCCAAGGAATAAGAGGCTATCACAGATCCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31199031 70 + 172585720 CCTTCTGTCCTGGGCTATCTCACCCCGATTCTAGAACTTTCCAAGGAATAAGAGGCTATCCCAGATCCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30483283 70 - 170955103 CCTTCTATCCTGGGCTATCTTACCCCGATTCTAGAACTTTCCAAGGAATAAGAGGCTATCCCAGATCCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     778345 70 +   1495729 CTTTCTGTCCTGGGCTATCTCACCCTGATTCTAGAACTTTCCAAGGAATAAGAGGCTATCCCAGATCCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      11043 70 -    811324 CCTTCTGTCCTGGGCTATCTCACCCCGATTCTAGAACTTTCCAAGGAATAAGAGGCTATCCCAGATCCCT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30051730 70 -  71996105 CCTTCTGTCCTGGGCTATCTCACCCCGATTCTAGAACTTTCCAAGGAATAAGAGGCTATCCCAGATCCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      45758 70 +    779361 CCTTCTGTCCTGGGCTATCTCACCCCGATTCTAGAACTTTCCAAGGAATAAGAGGCTATCCCAGATCCCT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     703437 70 -   1829203 CCTTCTATCCTGGACTATCTCACCCCGATTCTAGAACTTTCCAAGGAATAAGAGGCTATTCCAGATCCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30868697 70 + 171630274 CCTTCTATCCTGGGCTATCTCACCCCAATTCTAGAACTTTCCAAGGAATAAGAGGCTATCTCAGACCCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            34663 70 -    750284 CCTTCTTTCCTGGGCTATCTCACCCCAGTTCTAGAACTTTCCAAGGAATAAGAGGCTATCCCAGACCCCT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1285957 70 -   1771730 CTTTCTATCCTGGGCTATCTCACCCCAATTCTAGAACTTTCCAAGGAATAAGAGGCTATCCCAGACCCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     474352 70 -    486031 CCTTCTACCCTGAGCTATCTCACCCCGATTCTAGAACTTTCCAAGGAATAAGAGGCTATCCTAGATCCCT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     638182 70 -   1411461 CCTCCTACCCTGTGCTGTCTCATCCCAATTCTAGAACTTTCCAGTGAATAGGAGATTATCCCAGATCCCT
i proCoq1.NW_012149775v1   I 60 I 132
s otoGar3.GL873550           633301 70 +  18854210 CCTCCTACACTAGGCTATCTCATCACAATTCTAGAACTTTCTAGTGAATAGGGGATTATCCCAGATGCCT
i otoGar3.GL873550         I 13 C 0
s mm10.chr17               58955971 66 -  94987271 CCTCCTGTCC-ATGTTGTCCTGCTCACATCCTAAGGCATCCCTAAGAGCA---GATCCTCCCAGGTGCAG
i mm10.chr17               I 21 C 0

a score=286217.000000
s hg38.chr6_GL000254v2_alt  1835053 27 +   4827813 AAGTCCAGGCTGGTGTCAAGG-------------------TTTTGT
s panTro5.chr6             30681806 27 + 175400573 AAGTCCAGGCTGGTGTCAAGG-------------------TTTTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31105777 27 + 173848474 AAGTCCAGGCTGGTGTCAAGG-------------------TTTTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     611113 26 +   2037526 AAGTCCAGGCTGGTGTCAAGG--------------------TTTGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75284068 27 + 122973662 AAGTCCAGTCTGGTGTCAAGG-------------------TTTTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31199101 27 + 172585720 AAGTTCAGGCTGGTGTCAAGG-------------------TTTTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30483353 27 - 170955103 GAGTTCAGGCTGGTGTCAAGG-------------------TTTTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     778415 27 +   1495729 AAGTTCAGGCTGGTGTCGAGG-------------------TTTTGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      11113 27 -    811324 AAGTTCAGGCTGGTGTCAAGG-------------------TTTTGT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30051800 27 -  71996105 AAGTTCAGGCTGGTGTCAAGG-------------------TTTTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      45828 27 +    779361 AAGTTCAGGCTGGTGTCAAGG-------------------TTTTGT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     703507 27 -   1829203 AAGTTCAGGCTGGTGTCAAGG-------------------TTTTGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30868767 27 + 171630274 AAATCCAGGCTGGTATCTAGG-------------------TTTTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            34733 27 -    750284 AAGTCCAGGCTGGTGTCTAGG-------------------TTTTGT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1286027 27 -   1771730 AAGTCCAGGCTGGTGTCTAGG-------------------TTTTGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     474422 27 -    486031 AAGTCCAGGCTAGTGTCTGGG-------------------TTTTGC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           633371 46 +  18854210 GAGTTCAAGCTGGTAACTAGGAGTTTTTTCCCCGTTTGAGTTTTGT
i otoGar3.GL873550         C 0 I 177
s mm10.chr17               58956037 27 -  94987271 GTGCTCTAGCTGGTGTCTAGA-------------------TGATGG
i mm10.chr17               C 0 C 0
e proCoq1.NW_012149775v1     638252 132 -   1411461 I

a score=1098795.000000
s hg38.chr6_GL000254v2_alt  1835080 107 +   4827813 --CCTCTTCTCCTACTATAATTGTCCTCTTCCTTCTCAGGATGGTCACATGGGTGCTGCTGGAGTGT-CCCATGAGAGATACAAA-GTGCCTGAATTTTCTGACTCTTCCC
s panTro5.chr6             30681833 107 + 175400573 --CCTCTTCTCCTACTATAATTGTCCTCTTCCTTCTCAGGATGGTCACATGGGTGCTGCTGGAGTGT-CCCATGAGAGATACAAA-GTGCCTGAATTTTCTGACTCTTCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31105804 107 + 173848474 --CCTCTTCTCCTACTATAATTGTCCTCTTCCTTCTCAGGATGGTCACATGGGTGCTGCTGGAGTGT-CCCATGAGAGATACAAA-GTGCCTGAATTTTCTGACTCTTCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     611139 107 +   2037526 --CCTCTTCTCCTACTATAATTGTCCTCTTCCTTCTCAGGATGGTCACATGGGTGCTGCTGGAGTGT-CCCATGAGAGATACAAA-GTGCCTGAATTTTCTGACTCTTCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75284095 107 + 122973662 --CCTCTTCTCCTACTATAATTGTCCTCTTCCTTCTCAGGATGGTCACATGGGTGCTGCTGGAGTGT-CCCATGAAAGATACAAA-GTGCCTGAATTTTCTGACTCTTCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31199128 103 + 172585720 --CCTCATCTCCTACTATAATTGTCCTCTTTCTTCTCAGGATGGTCACATGGGTGCTGCTGGAGTGT-CCCATGAGAGATACACA-G----TGAATTTTCTGACTCTTCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30483380 107 - 170955103 --CCTCGTCTCCTACTATAATTGTCCTCTTCCTTCTCAGGATGGTCACATGGGTGCTGCTGGAGTGT-CCCATGAGAGATACAAA-GTGTCTGAATTTTCTGACTCTTCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     778442 103 +   1495729 --CCTCGTCTCCTACTATAATTGTCCTCTTTCTTCTCAGGATGGTCACATGGGTGCTGCTGGAGTGT-CCCATGAGAGATACACA-G----TGAATTTTCTGACTCTTCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      11140 103 -    811324 --CCTCATCTCCTACTATAATTGTCCTCTTCCTTCTCAGGATGGTCACATGGGTGCTGCTGGAGTGT-CCCATGAGAGATACACA-G----TGAATTTTCTGACTCTTCCC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30051827 103 -  71996105 --CCTCATCTCCTACTATAATTGTCCTCTTTCTTCTCAGGATGGTCACATGGGTGCTGCTGGAGTGT-CCCATGAGAGATACACA-G----TGAATTTTCTGACTCTTCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      45855 103 +    779361 --CCTCATCTCCTACTATAATTGTCCTCTTCCTTCTCAGGATGGTCACATGGGTGCTGCTGGAGTGT-CCCATGAGAGATACACA-G----TGAATTTTCTGACTCTTCCC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     703534 107 -   1829203 --CCTCGTCTCCTACTATAATTGTCCTCTTCCTTCTCAGGATGGTCACATGGGTGCTGCTGGGGTGT-CCCATGAGAGATACAAA-GTGTCTGAATTTTCTGACTCTTCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30868794 105 + 171630274 --GC---TCTCTTACTCTAATTGTCCTCTTTGTTCTCAGGATGGTCACACAGGCACTGCTGGACTGTCCCCATGAGAGATGCAAA-GTGCCTGAATTTTCTGACTCTTCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            34760 104 -    750284 --GC---TCTCCTACTCTAAATGTCCTCTTTGTTCTCAAGATGGTCACACAGGCACTGCTGGAGTGT-CCCATGAGAGATGCAAA-GTGCCTGAATTTTCTGACTCTTCCC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1286054 104 -   1771730 --GC---TCTTCTACTCTAATTGTCCTCTTTGTTCTCAAGATGGCCACAAAGGCACTGCTGGACTGT-CCCATGAGAGATGCAAA-GTGCCTGAATTTTCTGACTCTTCCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     474449 107 -    486031 --CCTCTTCTCCTACTCTAATTGTCCTCTTCGTTCTCAGGGTGGTCACATAGGCACTGCTGGACTGT-CCCATGAGAGATGCAAA-GTGCCTGAATTTTCTGACTCTTCCC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           633594 103 +  18854210 --TCCCCTCTCCCAGCCTAATTGACCTGTTCCTTCTTAGGATGAT--CAAGAGTATGGGTGGAGTGT-CTCATGAAAAATGCAAATGTTTCTTAATTTACTGATCCTT---
i otoGar3.GL873550         I 177 C 0
s mm10.chr17               58956064 105 -  94987271 ACACCATAATCCCACCGCAGTCCTCCTG-TCCACCCCAGGACGGTCACATGAACACTGCTGA---GT-CCCCAGAAGAAAGCAAG-ATGCCTCATCCTTTCAACTCTCTCC
i mm10.chr17               C 0 C 0
e proCoq1.NW_012149775v1     638252 132 -   1411461 I

a score=256917.000000
s hg38.chr6_GL000254v2_alt  1835187 18 +   4827813 CTCAGAGCCCCCAAAGAC
s panTro5.chr6             30681940 18 + 175400573 CTCAGAGCCCCCAAAGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31105911 18 + 173848474 CTCAGAGCCCCCAAAGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     611246 18 +   2037526 CTCAGAGCCCCCAAAGAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75284202 18 + 122973662 CTCAGATCCCCCAAAGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31199231 18 + 172585720 CTCAGAATCCCCAAAGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30483487 18 - 170955103 CTCAGAATCCCCAAAGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     778545 18 +   1495729 CTCAGAATCCCCAAAGAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      11243 18 -    811324 CTCAGAACCCCCAAAGAC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30051930 18 -  71996105 CTCAGAACCCCCAAAGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      45958 18 +    779361 CTCAGAACCCCCAAAGAC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     703641 18 -   1829203 CTCAGACCCCCCAAAGAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30868899 18 + 171630274 CTCAGAACCCCCAAAGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            34864 18 -    750284 CTCAGATCCCCCAAAGAC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1286158 18 -   1771730 CTCAGATCCCCCAAAGAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     474556 18 -    486031 CTCAGATCCCCCAAAGAC
i aotNan1.NW_018496901v1   C 0 I 15
s proCoq1.NW_012149775v1     638384 18 -   1411461 CTCAGATCCCCCAAAGAC
i proCoq1.NW_012149775v1   I 132 C 0
s otoGar3.GL873550           633697 18 +  18854210 CTCAGACCCCCCAAACAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58956169 18 -  94987271 CTCAGACCCTCCAAAGGC
i mm10.chr17               C 0 C 0

a score=201350.000000
s hg38.chr6_GL000254v2_alt  1835205 16 +   4827813 ACACGTGACTCACCAC
s panTro5.chr6             30681958 16 + 175400573 ACACGTGACCCACCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31105929 16 + 173848474 ACACGTGACCCACCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     611264 16 +   2037526 ACACGTGACCCACCAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75284220 16 + 122973662 ACATGTGACCCACCAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31199249 16 + 172585720 ACACGTGACCCGCCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30483505 16 - 170955103 ACACGTGACCCACCAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     778563 16 +   1495729 ACACGTGACCCGCCAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      11261 16 -    811324 ACACGTGACCCACCAC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30051948 16 -  71996105 ACACGTGACCCACCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      45976 16 +    779361 ACACGTGACCCACCAC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     703659 16 -   1829203 ACATTTAACCCACCAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30868917 16 + 171630274 ACATGTGACCCACCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            34882 16 -    750284 ACATGTGACCCACCAC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1286176 16 -   1771730 ACATGTGATCCACCAC
i cebCap1.NW_016107755v1   C 0 C 0
s proCoq1.NW_012149775v1     638402 16 -   1411461 ACATGTGACCCACCAC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           633715 16 +  18854210 ATATATCACCCACCAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58956187 16 -  94987271 ACATGTGACCCATCAC
i mm10.chr17               C 0 C 0
e aotNan1.NW_018496901v1     474574 15 -    486031 I

a score=3830450.000000
s hg38.chr6_GL000254v2_alt  1835221 281 +   4827813 CCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCG-GAGATCACACTGACCTGGCAGCAGGATGGGGAGGGCCATACCCAGGACACGGAGCTCGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCCA-TGTGCAGCATGAGGGG-CTACCCGAGCCCGTCACCCTGAGATGGAGTAAGGAGGGGGAT------G--G----------GAGGTCATGTCTCTTCTC
s panTro5.chr6             30681974 281 + 175400573 CCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCG-GAGATCACACTGACCTGGCAGCAGGATGGAGAGGGCCATACCCAGGACACGGAGCTTGTGGACACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCCA-TGTGCAGCATGAGGGG-CTACCCGAGCCCCTCACCCTGAGATGGAGTAAGGAGGGGGAT------G--G----------GAGGTCATGTCTCTTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31105945 281 + 173848474 CCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCG-GAGATCACACTGACCTGGCAGCAGGATGGAGAGGGCCATACCCAGGACACGGAGCTTGTGGACACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCCA-TGTGCAGCATGAGGGG-CTACCCGAGCCCCTCACCCTGAGATGGAGTAAGGAGGGGGAT------G--G----------GAGGTCATGTCTCTTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     611280 281 +   2037526 CCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCG-GAGATCACACTGACCTGGCAGCAGGATGGGGAGGGCCATACCCAGGACACGGAGCTTGTGGACACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCCA-TGTGCAGCATGAGGGG-CTACCCGAGCCCCTCACCCTGAGATGGAGTAAGGAGGGGGAT------G--G----------GAGGTCATGTCTCTTCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75284236 280 + 122973662 CACATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTTTACCCTGCG-GAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCGGACCCACAACACGGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGACAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCCA-TGTGCAGCATGAGGGG-CTACCTGAGCCCCTCACCCTGAGATGGGGTAA-GAGGGGGAT------G--G----------GAGGTCATGTCTCTTCTC
i nomLeu3.chr1a            C 0 M 4063
s rheMac8.chr4             31199265 278 + 172585720 CCCGTCTCTGATCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCG-GAGATCACAGTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACGGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAACTTTCCAGAAGTGGGCAGCTGTGGTGGTACCTTCTGGAGAGGAGCAGAGATACACGTGCCA-TGTGCAGCATGAGGGG-CTACCCGAGCCCCTCATCCTGAGATGGGGTAAGGAAGGGAAT------G--G----------GAGGTCATGTCTCTT---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30483521 278 - 170955103 CCCGTCTCTGATCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCG-GAGATCACAGTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACGGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAACTTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCCA-TGTGCAGCATGAGGGG-CTACCCGAGCCCCTCACCCTGAGATGGGGTAAGGAAGGGAAT------G--G----------GAGGTCATGTCTCTT---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     778579 278 +   1495729 CCCGTCTCTGATCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTATCCTGCG-GAGATCACAGTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACGGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAACTTTCCAGAAGTGGGCAGCTGTGGTGGTACCTTCTGGAGAGGAGCAGAGATACACGTGCCA-TGTGCAGCATGAGGGG-CTACCCGAGCCCCTCACCCTGAGATGGGGTAAGGAAGGGAAT------G--G----------GAGGTCATGTCTCTT---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      11277 278 -    811324 CCCGTCTCTGATCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCG-GAGATCACAGTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACGGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTACCTTCTGGAGAGAAGCAGAGATACACATGCCA-TGTGCAGCATGAGGGG-CTACCCGAGCCCCTCACCCTGAGATGGGGTAAGGAAGAGAAT------G--G----------GAGGTCATGTCTCTT---
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30051964 278 -  71996105 CCCGTCTCTGATCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCG-GAGATCACAGTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACATGGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAACTTTCCAGAAGTGGGCAGCTGTGGTGGTACCTTCTGGAGAGGAGCAGAGATACACGTGCCA-TGTGCAGCATGAGGGG-CTACCCGAGCCCCTCACCCTGAGATGGGGTAAGGAAGGGAAT------G--G----------GAGGTCATGTCTCTT---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      45992 278 +    779361 CCCGTCTCTGATCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCG-GAGATCACAGTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACGGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAACTTTCCAGAAGTGGGCAGCTGTGGTGGTACCTTCTGGAGAGGAGCAGAGATACACATGCCA-TGTGCAGCATGAGGGG-CTACCTGAGCCCCTCACCCTGAGATGGGGTAAGGAAGGGAAT------G--G----------GAGGTCATGTCTCTT---
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     703675 278 -   1829203 CCCTTCTCTGATCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCG-GAGATTACAGTGACCTGGCAGAGGGATGGGGAGGACCAGTCCCAGGACACGGAGCTTGTGGAGACCAGGCCTACAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCCA-TGTGCAGCATGAGGGG-CTACCCGAGCCCCAAGCCCTGAGATGGGGTAAGGAAGGGAAT------G--G----------GAGGTCATGTCTCTT---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30868933 281 + 171630274 CCTGTCTCTGACCATGAGGCCACCCTGAGATGCTGGGCCCTGGGTTTCTACCCTGCG-GAGATCACACTGACCTGGCAGTGGGATGGGGAGGACCAGACCCAGGACATGGAGCTTGTGGAGACCAGGCCAGCAGGGGATGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAGCAAAGATACACCTGCCA-TGTGCAGCATGAGGGG-CTGCGAGAGCCCCTCACCCTGAGATGGGGTAAGGA-GGGGATG-----G--G----------GGGGTCACATCTTTTCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            34898 286 -    750284 CGCGCCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCG-GAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCTGATCCAGGACATGGAGCTTGTGGAGACCAGGCCGGCAGGGGATGGAAACTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCCA-TGTGCAGCACGAGGGG-CTGCCGGAGCCCCTCACCCTGAGATGGGGTAAGGA-GGGGATGGGGGAG--G----------GGGGTCACATCTCTTCTC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1286192 275 -   1771730 CCCATCTCTGATCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCG-GAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACATGGAGCTTGTGGAGACCAGGCCAGCAGGGGACGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGTCTTCTGGAGAGGAGCAGAGATACACGTGCCA-TGTGCAGCATGAGGGG-CTGCCGGAGCCCCTCACGCTGAGATGGGGTAAGGA-GGGCAT------G--G----------GAGGTCACA-----TCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     474589 279 -    486031 CCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGAGATATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGATCCAGGACATGGAGCTTGTGGAGACCAGGCCAGCAGGGGACGGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGTCTTCTGGAGAGGAGCAGAGATACACATGCCAGTGTGCAGCACGAGGGGCCTGCCGGAGCCCCTCACGCTGAGAT-GGGTAAGGA-GGGGAT------G--G----------GGGT---CATCTCTTCTC
i aotNan1.NW_018496901v1   I 15 C 0
s proCoq1.NW_012149775v1     638418 281 -   1411461 CCCATCTCTGACCGGGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCG-GAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACACGGAGTTTGTGGAGACCAGGCCTGCAGGGGATAGAACCTTCCAGAAGTGGGCGGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGCGATACACGTGCCG-TGTGCAGCACAAGGGG-CTGCCGGAGCCCCTCACCCTGAGATGGGGTAAGGAT-GGGAT------GG-G----------GTGGTCACATCTCTTCTC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           633731 283 +  18854210 ACAGTCTCTGACTGTGAGGCCATCCTGAGATGCTGGGCCCTGGGCTTCTACCCTGCA-AAGATCACACTGACCTGGCAGCAGGATGGGGAGGACCAGACCAACAACACAGAGCTTACAGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTCCCTTCTAGAGAGGAGCAGAGATATACCTGCCA-TGTGCAACACGAAGGG-CTTCAGGAGCCCCTCACCCTGAGATTGGGTAAGGAGAGGGAT------GGAG----------AGGGTGTTATGTCTTCTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58956203 278 -  94987271 CCTAGATCTGAAGATGAAGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCT-GACATCACCCTGACCTGGCAGTTGAATGGGGAGGAGCTGACCCAGGACATGGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTCGTGGTGCCTCTTGGGAAGGAGCAGTATTACACATGCCA-TGTGTACCATGAGGGG-CTGCCTGAGCCCCTCACCCTGAGATGGGGTAAGGA-GGGTGT------G--GGTGCTGAACTGGGGTC------------
i mm10.chr17               C 0 C 0

a score=588979.000000
s hg38.chr6_GL000254v2_alt  1835502 59 +   4827813 AGGGAAAGCGGGAGCCCTTCTGGAGCCCTTCCGCAGGGTCAGGGCTGAGGCCTGGGGGT
s panTro5.chr6             30682255 59 + 175400573 AGGGAAAGCGGGAGCCCTTCTGGAGCCCTTCCGCAGGGTCAGGGCTGAGGCCTGGGGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31106226 59 + 173848474 AGGGAAAGCGGGAGCCCTTCTGGAGCCCTTCCGCAGGGTCAGGGCTGAGGCCTGGGGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     611561 59 +   2037526 AGGGAAAGCGGGAGCCCTTCTGGAGCCCTTCCGCAGGGTCAGGGCTGAGGCCTGGGGGT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31199543 59 + 172585720 AGGGAAAGCAGGAGCCCTTCTGAAGCCCTTCCGCAGGGTCAGGGCTGAGGCCTGGGGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30483799 59 - 170955103 AGGGAAAGCAGGAGCCCTTCTGAAGCCCTTTTGCAGGGTCAGGGCTGAGGCCTGGGGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     778857 59 +   1495729 AGGGAAAGCAGGAGCCCTTCTGAAGCCCTTCCGCAGGGTCAGGGCTGAGGCCTGGGGGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      11555 59 -    811324 AGGGAAAGCAGGAGCCCTTCTGAAGCCCTTTTGCAGGGTCAGGGCTGAGGCCTGGGGGT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30052242 59 -  71996105 AGGGAAAGCAGGAGCCCTTCTGAAGCCCTTTTGTAGGGTCAGGGCTGAGGCCTGGGGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      46270 59 +    779361 AGGGAAAGCAGGAGCCCTTCTGAAGCCCTTTTGCAGGGTCAGGGCTGAGGCCTGGGGGT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     703953 52 -   1829203 AGGGAAAGCAGGAGCCCTTCTGAAGCCCTTCCGCAGGGTCAGGG-------CTGGGGGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30869214 59 + 171630274 AGGGAAAGCAGGAGCCCTTCATGAGCCCTTCATCAGGGTCGGGGCGGAGGCCTAGGGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            35184 59 -    750284 AGGGAAAGCTGGAGCCCTTCTTGAGCCCTTTATCAGGGTCGGGGCTGAGGCCTGGGGGT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1286467 59 -   1771730 AGGGAGAGCAGGAGCCCTTCTTGAGCCCTTTATTAGGGTTGGGGCTGGGGCCTGGGGGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     474868 58 -    486031 AGGGAAAGCAGGAGCCCTTCTTCAGCCCTTTATCAGGGTT-GGGCTGAGGCCTGGGGGT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     638699 57 -   1411461 AGGGAAATCAGGGGCCCTTCTGGAGCCCTTCAGCAGGGTCAGGGCTGA-GCCTGGGGT-
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           634014 42 +  18854210 GAGGAA-----------------AGCCCTCCAGCTGGCTCAGGGCTAAGGCTTAGGGTT
i otoGar3.GL873550         C 0 I 346
s mm10.chr17               58956481 56 -  94987271 AGGGAAAGCTGGAG-CCTTCTGCAGACCCTGAGTTGG-TCATGGCTCAGAGCTGGGAT-
i mm10.chr17               C 0 C 0
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=1910790.000000
s hg38.chr6_GL000254v2_alt  1835561 201 +   4827813 CAGGGCCCCTTACGTTCCCCTCTT----------TTCCCAGAGCCGGCTTCCCAGCCCACCATCCCCATCGTGGGCATCATTGCTGGCCTGGTTCTCCTTGGATCTGTGGTCT---CT---------------GGAGCTGTGGTTGCTGCTGTGATATGGAGGAAGAAGAGCTCAGGTGGGGAAGGGA-GAAGGGTGGGGTCTGAGTTTTCTTGTCCCACTGGGTGTTTC
s panTro5.chr6             30682314 201 + 175400573 CAGGGCCCCTTACGTTCCCCTCTT----------TTCCCAGAGCCGGCTTCCCAGCCCACCATCCCCATCGTGGGCATCATTGCTGGCCTGGTTCTCCTTGGATCTGTGGTCT---CT---------------GGAGCTGTGGTTGCTGCTGTGATGTGGAGGAAGAAGAGCTCAGGTGGGGAAGGGA-GAAGGGTGGGGTCTGAGTTTTCTTGTCCCACTGGGTGTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31106285 201 + 173848474 CAGGGCCCCTTACGTTCCCCTCTT----------TTCCCAGAGCCGGCTTCCCAGCCCACCATCCCCATCGTGGGCATCATTGCTGGCCTGGTTCTCCTTGGATCTGTGGTCT---CT---------------GGAGCTGTGGTTGCTGCTGTGATGTGGAGGAAGAAGAGCTCAGGTGGGGAAGGGA-GAAGGGTGGGGTCTGAGTTTTCTTGTCCCACTGGGTGTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     611620 200 +   2037526 CAGGGCCCCTTACGTTCCCCTCTT----------TTCCCAGAGCCGGCTTCCCAGCCCACCATCCCCATCGTGGGCATCATTGCTGGCCTGGTTCTCCTTGGATCTGTGGTCT---CT---------------GGAGCTGTGGTTGCTGCTGTGATATGGAGGAAGAAGAGCTCAGGT-GGGAAGGGA-GAAGGGTGGGGTCTGAGTTTTCTTGTCCCACTGGGTGTTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31199602 198 + 172585720 CAGGGCCCCTTACGTTCCCCTGTT----------TTCCCAGAGCCGTCTTCCCAATCCTCCATCCCAATCGTGGGCATCATTGTTGGCCTGGTTCTCCTTGGAGCTGTGGTCA---CT---------------GGAGCTGTGGTTGCTGCTGTGATGT---GGAGGAAGAGCTCAGGTAGGGAAGGGA-GAGGGGTAGAGTCTGAGTTTTCTTGTCCCACTGGGGGTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30483858 201 - 170955103 CAGGGCCCCTTACGTTCCCCTGTT----------TTCCCAGAGCCGTCTTCCCAGTCCACCATCCCCATCGTGGGCATCATTGCTGGCCTGGTTCTCCTTGGAGCTGTGGTCA---CT---------------GGAGCTGTGGTTGCTGCTGTGATGTGGAGGAGGAAGAGCTCAGGTGGGGAAGGGA-GAGGGGTAGAGTCTGAGTTTTCTTGTCCCACTGGGGGTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     778916 198 +   1495729 CAGGGCCCCTTACGTTCCCCTGTT----------TTCCCAGAGCCGTCTTCCCAATCCTCCATCCCAATCGTGGGCATCATTGTTGGCCTGGTTCTCCTTGGAGCTGTGGTCA---CT---------------GGAGCTGTGGTTGCTGCTGTGATGT---GGAGGAAGAGCTCAGGTAGGGAAGGGA-GAGGGGTAGAGTCTGAGTTTTCTTGTCCCACTGGGGGTTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      11614 201 -    811324 CAGGGCCCCTTACGTTCCCCTGTT----------TTCCCAGACCCGTCTTCCCAGTCCACCATCCCCATCGTGGGCATCATTGCTGGCCTGGTTCTCCTTGGAGCTGTGGTCA---CT---------------GGAGCTATGGTTGCTGCTGTGATGTGGAGGAGGAAGAGCTCAGGTGGGGAAGGGA-GAGGGGTAGAGTCTGAGTTTTCTTGTCCCACTGGGGGTTTC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30052301 201 -  71996105 CAGGGCCCCTTACGTTCCCCTGTT----------TTCCCAGAGCCATCTTCCCAGTCCACCATCCCCATCGTGGGCATCATTTCTTGCCTGTTTCTCCTTGGAGCTGTGGTCA---CT---------------GGAGCTGTGGTTGCTGCTGTGATGTGGAGGAGGAAGAGCTCAGGTGGGGAAGGGA-GAGGGGTAGAGTCTGAGTTTTCTTGTCCCACTGGGGGTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      46329 198 +    779361 CAGGGCCCCTTACGTTCCCCTGTT----------TTCCCAGAGCCGTCTTCCCAGTCCACCATCCCCATCGTGGGCATCATTGCTAGCCTGGTT---CTTGGAATTGTGGTCA---CT---------------GGAGCTGTGGTTGCTGCTGTGATGTGGAGGAGGAAGAGCTCAGGTGGGGAAGGGA-GAGGGGTAGAGTCTGAGTTTTCTTGTCCCACTGGGGGTTTC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     704005 201 -   1829203 CAGGGCCCCTTACGTTCCCCTGTT----------TTCCCAGAGCCGTCTTCCCAACACTCCATCCCAATCGTGGGCATCATTGCTGGCCTGGTTCTCCTTGGAGTTGTGGTCA---CT---------------GGAGCTGTGGTTCCTGCTGTGATGTGGAGGAGGAAGAGCTCAGGTGGGGAAGAAA-GAGGGGTAGAGTCTGAGTTTTCTTGTCCCACTGGGGATTTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30869273 202 + 171630274 CAGGGCCCTTCACCTTCCTGTTTT----------CTTCCAGAGCCATCTTCCCAGCCCACCATCCCCATCGTGGGCATCGTTGTTGGCCTGGCTGTCCTTGGAGCTGTGGTCA---CT---------------GGAGCTGTGGTTGCTGCTGTGATGCAGAAAAAGAAGAGCTTAGGTGAGGAAGGGGTTAGGGGTGGGGTCTCTGTTTTCTTGTCCCACTGGGGATTTC
i calJac3.chr4             C 0 N 0
s saiBol1.JH378327            35243 199 -    750284 CAGGGCCCCTCACCTCC---TCCT----------TTCCCAGAGCCGTCTTCCCAGCCCACCATCCCCATCGTGGGCATCGTTGCTCCCCTGGTTGTCCTTGGAGCTGTGGTCA---CT---------------GGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAGAGCTCAGGTGAGGAAGGCGTTAGGGGTGGGGTCTCAGTTTTTTTGTCCCACTGGGGATTTC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1286526 202 -   1771730 CAGGGTCCCTCACCTTCCCGTTTT----------CTCCCAGAGCCATCTTCCCAGCCCACCATCCCCATCGTGGGCATCGTTGCTGCCCTGGCTGTCCTTGGAACTGTGGTCA---CT---------------GGAGCTGTGGTTGCTGCTGTGATGTGGAGGAAGAAGAGCTCAGGTGAGGAAGGGGTGAGCAGTGGGGTCTGAGTTTTCTTGTCCCACTGGGGATTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     474926 199 -    486031 CAGGGACCCTCACCTTCCCGTTTT----------CTCCCAGAGCCGTCTTCCCAGCCCACCATCCCCATCGTGGGCATCGTTGCTGGCCTGGCTGTCCTTGGAACTGTGGTCA---CT---------------GGAGTGTTGGTCGCTGCTGTGATGTGGAGGAAGAAGAACTCAGGTGAGGAAGGGGTTAGGAGT-GGGTCTGAGATTTCTTGTCCCACT--GGATTTC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     638756 216 -   1411461 -CAGGCCCCTCATCTTCCCATCCT----------TTCCCAGAGCCGCCTTCCCAGCCCAGCGTCCCCATGGTGGGCCTCCCTCCTGGCCTGATTCTCCTTGGAGCTGTGCTCA---CTGGAGCTGTGGTAGCCGGAGCTGTGGTTGCCACTTTGATGTGGCAGAAGATGAGCTAAGGTGAGGAAGGGGTGAAGGGTGGGGTCTGGGTTTTTTTGTCTCCCTGGGGGTTTC
i proCoq1.NW_012149775v1   C 0 C 0
s mm10.chr17               58956537 187 -  94987271 -CATAACCCTCACCTTCATTTCCTGTACCTGTCCTTCCCAGAGC---CTCCTCCATCCACTGTCTCCAACATGGTAATCATAGCTGTTCTGGTTGTCCTTGGAGCTGTGATCATCCTT---------------GGAGCTGTGGTGGCTTTTGTGATGAAGAGGAGGAGACACATAGGTAGGAAAGGGC--------AGGGTCTGAGTTTTCTCT----------------
i mm10.chr17               C 0 C 0
e otoGar3.GL873550           634056 346 +  18854210 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=383022.000000
s hg38.chr6_GL000254v2_alt  1835762 38 +   4827813 AAGCCCTAGGTAAAAGTGTGTCCTGCCTCGTTACTGGG
s panTro5.chr6             30682515 38 + 175400573 AAGCCCTTGGTAGAAGTGTGTCCTGCCTCGTTACTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31106486 38 + 173848474 AAGCCCTAGGTAGAAGTGTGTCCTGCCTCGTTACTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     611820 38 +   2037526 AAGCCCTAGGTAGAAGTGTGTCCTGCCTCGTTACTGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31199800 38 + 172585720 AAGCCCTAGGTAGAAGTGTGTCCTGCCTTGTTACTGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30484059 38 - 170955103 AAGCCCTAGGTAGAAGTGTGTCCTGCCTTGTTACTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     779114 38 +   1495729 AAGCCCTAGGTAGAAGTGTGTCCTGCCTTGTTACTGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      11815 38 -    811324 AAGCCCTAGGTAGAAGTGTGTCCTGCCTTGTTACTGGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30052502 38 -  71996105 AAGCCCTAGGTAGAAGTGTGTCCTGCCTTGTTACTGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      46527 38 +    779361 AAGCCCTAGGTAGAAGTGTGTCCTGCCTTGTTACTGGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     704206 38 -   1829203 AAGCCCTAGGTAGAAGTGTGTCCTGCCTTGTTACTGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30768701 38 + 171630274 AAGCTCCAGGTAGAGATGTGCCCTGCCTTGTTACTGGG
i calJac3.chr4             N 0 N 0
s saiBol1.JH378327            35442 38 -    750284 AAGCCCCGGGTAGAAGTGTGCCCTGCTTAGTTACTGGG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1286728 38 -   1771730 AAGCCCCAGGTAGAAGTGTGCCCTGCTTAGTTACTGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     475125 37 -    486031 AAGCCCCAGGTAGAAGTGTG-CCTGCTTAGTTACTGTG
i aotNan1.NW_018496901v1   C 0 I 1
s proCoq1.NW_012149775v1     638972 37 -   1411461 AAGCCC-AGGTAGAAGTGTGCCCTGTCCCATTACTGGG
i proCoq1.NW_012149775v1   C 0 C 0
s mm10.chr17               58956724 37 -  94987271 CAGCCTCCTTTTGCAGTGTGCTCTGCTCC-TTAATGGG
i mm10.chr17               C 0 C 0
e otoGar3.GL873550           634056 346 +  18854210 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=161174.000000
s hg38.chr6_GL000254v2_alt  1835800 15 +   4827813 AAGCACCATCCACAC
s panTro5.chr6             30682553 15 + 175400573 AAGCACCATCCACAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31106524 15 + 173848474 AAGCACCATCCACAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     611858 15 +   2037526 AAGCACCATCCACAC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31199838 15 + 172585720 AAGCACCGTCCACAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30484097 15 - 170955103 AAGCACCATCCACAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     779152 15 +   1495729 AAGCACCGTCCACAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      11853 15 -    811324 AAGCACCATCCACAC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30052540 15 -  71996105 AAGCACCATCCACAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      46565 15 +    779361 AAGCACCATCCACAC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     704244 15 -   1829203 AAGCACCATCCACAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30869475 15 + 171630274 AAGCACCATCCACAC
i calJac3.chr4             N 0 C 0
s saiBol1.JH378327            35480 15 -    750284 AAGCAGCATCCACAC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1286766 15 -   1771730 AAGCGCCATCCACAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     475163 15 -    486031 AAGCACCATCCACAC
i aotNan1.NW_018496901v1   I 1 C 0
s proCoq1.NW_012149775v1     639009 15 -   1411461 AAGTTCCATCCACAC
i proCoq1.NW_012149775v1   C 0 I 40
s mm10.chr17               58956761 14 -  94987271 AAACA-TAGCCACAC
i mm10.chr17               C 0 C 0
e otoGar3.GL873550           634056 346 +  18854210 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=32233.000000
s hg38.chr6_GL000254v2_alt  1835815 4 +   4827813 ACAC
s panTro5.chr6             30682568 4 + 175400573 ACAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31106539 4 + 173848474 ACAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     611873 4 +   2037526 ACAC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31199853 4 + 172585720 TCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30484112 4 - 170955103 ACAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     779167 4 +   1495729 TCAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      11868 4 -    811324 ACAC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30052555 4 -  71996105 ACAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      46580 4 +    779361 ACAC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     704259 4 -   1829203 ACAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30869490 4 + 171630274 GCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            35495 4 -    750284 ACAC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1286781 4 -   1771730 ACAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     475178 4 -    486031 ACAC
i aotNan1.NW_018496901v1   C 0 T 73808
s mm10.chr17               58956775 4 -  94987271 CCAC
i mm10.chr17               C 0 I 36400
e proCoq1.NW_012149775v1     639024 40 -   1411461 I
e otoGar3.GL873550           634056 346 +  18854210 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=213138.000000
s hg38.chr6_GL000254v2_alt  1835819 31 +   4827813 GAGCCTACCCAGCCTGGGGCCCTGTGTGCCA
s panTro5.chr6             30682572 31 + 175400573 GGGCCTACCCAGCCTGGGGCCCTGTGTGCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31106543 31 + 173848474 GGGCCTACCCAGCCTGGGGCCCTGTGTGCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     611877 31 +   2037526 GGGCCTACCCAGCCTGGGGCCCTGTGTGCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31199857 30 + 172585720 GGGCCGACCCAGCCT-GGGCCTTGTGTGCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30484116 30 - 170955103 GGGCCGACCCAGCCC-GGGCCCTGTGTGCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     779171 30 +   1495729 GGGCCGACCCAGCCT-GGGCCTTGTGTGCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      11872 30 -    811324 GGGCCGACCCAGCCC-GGGCCCTGTGTGCCA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30052559 30 -  71996105 GGGCCGACCCAGCCC-GGGCCCTGTGTGCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      46584 30 +    779361 GGGCCGACCCAGCCC-GGGCCCTGTGTGCCA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     704263 30 -   1829203 AGGCCGACCCAGCCC-GGGCCCTGTGTGCCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30869494 30 + 171630274 CGGCCTACTCAGCGT-GGGCCCTGTGTGCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            35499 30 -    750284 AGGCCTACTCAGCCT-GGGCCCTGTGTGCCA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1286785 30 -   1771730 AGGCCTACTCAGCAT-GGGCCCTGTGTGCCA
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639024 40 -   1411461 I
e otoGar3.GL873550           634056 346 +  18854210 I
e aotNan1.NW_018496901v1     475182 73808 -    486031 T
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=38753.000000
s hg38.chr6_GL000254v2_alt  1835850 7 +   4827813 GCACCTA
s panTro5.chr6             30682603 7 + 175400573 GCACCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31106574 7 + 173848474 GCACCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     611908 7 +   2037526 GCACCTA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31199887 7 + 172585720 GCACCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30484146 7 - 170955103 GCACCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     779201 7 +   1495729 GCACCTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      11902 7 -    811324 GCACCTA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30052589 7 -  71996105 GCACCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      46614 7 +    779361 ACACCTA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     704293 7 -   1829203 GCACCTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30869524 7 + 171630274 GTGCTTA
i calJac3.chr4             C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639024 40 -   1411461 I
e saiBol1.JH378327            35529 0 -    750284 C
e otoGar3.GL873550           634056 346 +  18854210 I
e aotNan1.NW_018496901v1     475182 73808 -    486031 T
e cebCap1.NW_016107755v1    1286815 0 -   1771730 C
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=22948.000000
s hg38.chr6_GL000254v2_alt  1835857 4 +   4827813 CTCt
s panTro5.chr6             30682610 4 + 175400573 CTCt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31106581 4 + 173848474 CTCt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     611915 4 +   2037526 CTCt
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31199894 4 + 172585720 Cttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30484153 4 - 170955103 CTCt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     779208 4 +   1495729 Cttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      11909 4 -    811324 CTCt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30052596 4 -  71996105 CTCt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      46621 4 +    779361 CTCt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     704300 4 -   1829203 CTCt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30869531 4 + 171630274 TTCT
i calJac3.chr4             C 0 I 2
s otoGar3.GL873550           634402 4 +  18854210 tttt
i otoGar3.GL873550         I 346 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639024 40 -   1411461 I
e saiBol1.JH378327            35529 0 -    750284 C
e aotNan1.NW_018496901v1     475182 73808 -    486031 T
e cebCap1.NW_016107755v1    1286815 0 -   1771730 C
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=1304090.000000
s hg38.chr6_GL000254v2_alt  1835861 295 +   4827813 ttttttttgagacggagtcttggctctgtcacccaggctggagtgcaatggcgtggtttcagctcact------------gcaacctccg-cctcccaggttca----agcaattctcctg---cctcagcctccctagtagctgggact---acacatgcgtgccaccacacctggctaa--tttttttttttgtatttttagtggagat-ggggtttcactatgttggccaggctggtctcgaactcctga--cttt--gtgatctg--cctgcctcggcctcccaaagtgctgggattacagtcgtgagcca--ccgcacccagcc
s panTro5.chr6             30682614 298 + 175400573 ttttttttgagacggagtcttggctctgtcacccaggctggagtgcaatggcgtggtttcagctcact------------gcaacctccg-cctcccaggttca----agcaattctcctg---cctcagcctctctagtagctgggact---acacatgcgtgccaccacacccggctaatttttttttttttgtatttttagtggagacgggggtttcactatgttggccaggctggtctcgaactcctga--cttt--gtgatctg--cctgcctcagcctcccaaagtgctgggattacagtcgtgagcca--ccgcacccagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31106585 297 + 173848474 ttttttttgagacggagtcttggctctgtcacccaggctggagtgcaatggcgtggtttcagctcact------------gcaacctccg-cctcccaggttca----agcaattctcctg---cctcagcctctctagtagctgggact---acacatgcgtgccaccacacccggctaa-ttttttttttttgtatttttagtggagacgggggtttcactatgttggccaggctggtctcgaactcctga--cttt--gtgatctg--cctgcctcagcctcccaaagtgctgggattacagtcgtgagcca--ccgcacccagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     611919 297 +   2037526 ttttttttgagacggagtcttggctctgtcacccaggctggagtgcaatggcgtggtttcagctcact------------gcaacctccg-cctcccaggttca----agcaattctcctg---cctcagcctccctagtagctgggact---acacatgcgtgccaccacacccagctaatttttttttttttgtatttttagtgaagacgggggtttcactatgttggccaggctggtctcgaactcctga--cttt--gtgatctg--cctg-ctcagcctcccaaagtgctgggattacagtcgtgagcca--ccgcacccagcc
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31199898 307 + 172585720 tttttt-t-agatggaatcttggctctgtcacccaggctggagtgcaatggcgtggtttcagttcactgtaactgtactggtaacctctgccctcctagttcaa----ggcggttctcctg---cctcagcctcccgagtaggcgggaactggacgtgtggcgtcaaccacacccggctaa------tttttttgtatttttagtagatag-ggag-ttcactgtgttggccaggcggctgtctaactcctgaaccctc--gtgatccacgcctgcctcggcctcgcaaagtgcc-ggattacaggcgtgagcca--tcgcgcccagcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30484157 298 - 170955103 tttttt-tgagatggaatcttgactctgtcacccaggctggagtgcaatggcgtggtttcagttcactgtaact------gtaacctctg-cctcctaggttca----agcggttctcctg---cctcagcctcccgagtagctgggact---acatgtgtgtgccaccacacccggctaa----tttttttttggatttttagtagatat-ggagtttcactgtgttggccaggctggtgtcaaactcctga--cctc--gtgatcca--cctgcctcagcctcgcaaagtgctgggattacaggcgtgagcca--tcgcacccagcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     779212 296 +   1495729 tttttt---agatggaatcttggctctgtcacccaggctggagtgcaatggcgtggtttcagttcactgtaact------gtaacctctg-cctcctaggttca----agcggttctcctg---cctcagcctcctgagtagctgggact---acgtgtgcgtgccaccacacccggctaa----tttttttttttatttttagtagaggt-ggggtttcactgtattggccaggctggtcttgaactcctga--cctc--gtgatcca--cctgcctaggcctcgcaaagtgctgggattacaggcgtgagcca--gcacgcccagcc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      11913 287 -    811324 tttttt-tgagatggaatcttggctctgtcacccaggctggagtgcaatggcgtggtttcagttcact------------gtaacctctg-cctcccaggttca----agcgattctcgtg---cctcagcctcccgagtagctgggact---acatgtgcgtgccaccacacccggctaa----tttttttttgtacttttagtagagat-ggggtttcactgtgttggccaggctggtgtcgaactcctga--cctc--gtgatcca--cctgcctcggcctcacaaagtgctgggattacaggcgtgagcca--ccgcgcT-----
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30052600 290 -  71996105 ttttta-tgagatggaatcttggctctgtcacgcaggctggagtgcaatagcgtggtttcagttcact------------gtaacctctg-cctcccaggttca----agcgattctcctgcctcctcagcctcccgagtagctgggact---acgtgtgcgtgtcaccacacccggctaa----tttttttttgtacttttagtagagat-ggggtttcactgtgttggccaggctggtgtcgaactcctga--cctc--gtgatcca--cctgcctcggcctcacaaagtgctgggattacaggcgtgagcca--ccgcgcc-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      46625 285 +    779361 tttt---tgagatggaatcttggctctgtcacccaggctggagtgcaatggcgtggtttcagttcact------------gtaacctctg-cctcccaggttca----agcgattctcctg---cctcagcctcccgagtagctgggact---acatgtgcgtgccaccacacccggctaa----tttttttttgtacttttagtagagat-ggggtttcactgtgttggccaggctggtgtcgaactcctga--cctc--gcgatcca--cctgcctcagcctcacaaagtgctgggattacaggcgtgatcca--ccacgcc-----
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     704304 299 -   1829203 ttttttttgtgatggaatcttggctctgtcacccaggctagagtgcaatggcgtggtttcagttcactgtaact------gtaacctctg-cctcctaggttca----agcggttctcctg---cctcagcctcccaagtagctgggact---acgtgtgcatgccaccacacccagctaa----tttttttttgtatttttagtagagat-ggggtttcactgtgttggccaggctggtctcgaactcctga--cctc--gtgatcca--cctgcctccgcctcacaaagtgctgggattacaggcatgagcca--ccaggcccagcc
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           634406 279 +  18854210 ttttttttgaagcagaaactc-actttgtatccctgggtagagtgttgttgtgtgat---agctcaca------------gcaacctcaa-actcttgggctcaaatgagtgatccccttg---cctcagcctcctgagtagctggtact---acaggcacccaccacagtacccggctat----ttt----------------tagagat-ggaatctcactctg--gctcaggctggtctcaaactcatga--actcaggcagttca--cctgcctcattctcccagagtgctaggattacaggtgtgaATGAGCCCAGACCTAGAC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639024  40 -   1411461 I
e saiBol1.JH378327            35529   0 -    750284 C
e aotNan1.NW_018496901v1     475182 73808 -    486031 T
e cebCap1.NW_016107755v1    1286815   0 -   1771730 C
e calJac3.chr4             30869535   2 + 171630274 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=2354.000000
s hg38.chr6_GL000254v2_alt  1836156 1 +   4827813 G
s panTro5.chr6             30682912 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31106882 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612216 1 +   2037526 G
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31200205 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30484455 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     779508 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 C 0
s colAng1.NW_012115577v1     704603 1 -   1829203 A
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            35529 1 -    750284 G
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1286815 1 -   1771730 G
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     401374 1 -    486031 G
i aotNan1.NW_018496901v1   T 73808 C 0
s otoGar3.GL873550           634685 1 +  18854210 G
i otoGar3.GL873550         C 0 I 4380
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639024 40 -   1411461 I
e calJac3.chr4             30869535 2 + 171630274 I
e manLeu1.NW_012106264v1      46910 0 +    779361 C
e chlSab2.chr17            30052890 0 -  71996105 C
e cerAty1.NW_012002513v1      12200 0 -    811324 C
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=45440.000000
s hg38.chr6_GL000254v2_alt  1836157 11 +   4827813 CACCTACTCTT
s panTro5.chr6             30682913 11 + 175400573 CACCTACTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31106883 11 + 173848474 CACCTACTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612217 11 +   2037526 CACCTACTCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31200206 10 + 172585720 CACCTACT-TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30484456 11 - 170955103 CACCTACTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     779509 11 +   1495729 CACCTGCTCTT
i macNem1.NW_012012100v1   C 0 C 0
s colAng1.NW_012115577v1     704604 11 -   1829203 CACCTACTCTT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            35530 11 -    750284 CGCTTACTCTT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1286816 11 -   1771730 CACTTACTCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     401375 11 -    486031 CACTTACTCTT
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639024 40 -   1411461 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e calJac3.chr4             30869535  2 + 171630274 I
e manLeu1.NW_012106264v1      46910  0 +    779361 C
e chlSab2.chr17            30052890  0 -  71996105 C
e cerAty1.NW_012002513v1      12200  0 -    811324 C
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=345681.000000
s hg38.chr6_GL000254v2_alt  1836168 40 +   4827813 TTGTAAAGCACCTGT-GACAATGAAGGACAGATTTATCACC
s panTro5.chr6             30682924 40 + 175400573 TTGTAAAGCACCTGT-GACAATGAAGGACAGATTTATCACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31106894 40 + 173848474 TTGTAAAGCACCTGT-GACAATGAAGGACAGATTTATCACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612228 40 +   2037526 TTGTAAAGCACCTGT-GACAATGAAGGACAGATTTATCACC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31200216 41 + 172585720 TTCTAAAGTACCTGTGGACAATGAAGGACAGATTTATCACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30484467 40 - 170955103 TTCTAAAGTACCTGT-GACAATGAAGGACAGATTTATCACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     779520 40 +   1495729 TTGTAAAGTACTTGT-GACAATGAAGGACAGATTTATCACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      12200 37 -    811324 ---TGTGGTACCTGT-GACAATGAAGGACAGATTTATCACC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30052890 37 -  71996105 ---tgTGGTACCTGT-GACGATGAAGGACAGATTTATCACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      46910 37 +    779361 ---tgTGGTACCTGT-GACAATGAAGGACAGATTTATCACT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     704615 40 -   1829203 TTGTAAAGTACCTGT-GACAATGAAGGACGGATTTATCACC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30869537 40 + 171630274 TTATAAAGGACCTGT-GACAATGAAGGACAGATGTATCACC
i calJac3.chr4             I 2 I 315
s saiBol1.JH378327            35541 40 -    750284 TTATAAAGGACCTGT-GACATTGAAGGACAGATGTATCACC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1286827 40 -   1771730 TTATAAAGGACCTAT-GACATTGAAGGACAGATGTATCACC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     401386 40 -    486031 TTGTAAAGCACCTGT-GACATTGAAGGACAGATTTATCACC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     639064 40 -   1411461 TTGTAAAGCACGTGT-GAAAGTCAAGGACAGAGTTTTCACA
i proCoq1.NW_012149775v1   I 40 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=464641.000000
s hg38.chr6_GL000254v2_alt  1836208 47 +   4827813 TTGACGATTGTGGTGATGGGGACCTGATCC-CAGCAGTCACAGGTCAC
s panTro5.chr6             30682964 47 + 175400573 TTGACGATTGTGGTGATGGGGACCTGATCC-CAGCAGTCACAGGTCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31106934 47 + 173848474 TTGACGATTGTGGTGATGGGGACCTGATCC-CAGCAGTCACAGGTCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612268 47 +   2037526 TTGACGATTGTGGTGATGGGGACCTGATCC-CAGCAGTCACAGGTCAC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31200257 47 + 172585720 TTGACGATTGTGGTGATGGGGATCTGAGCC-CAGCAGTCACAGGTCAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30484507 47 - 170955103 TTGACGATTGTGGTGATGGGGATCTGAGCC-CAGCAGTCACAGGTCAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     779560 47 +   1495729 TTGACAATTGTGGTGATGGGGATCTGAACC-CAGCAGTCACAGGTCAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      12237 47 -    811324 TTGACGATTGTGGTGATGGGGATCTGAGCC-CAGCAGTCACAGGTCAC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30052927 47 -  71996105 CTGATGATTGTGGTGATGGGGATCTGAGCC-CAGCAGTCACAGGTCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      46947 47 +    779361 TTGATGATTGTGGTGATGGGGATCTGAGCC-CAGCAGTCACAGGTCAC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     704655 47 -   1829203 TTGACGATTGTGGTGATGGGGATCTGAGCC-CAGCAGTCACAGGTCAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30869892 47 + 171630274 TTGATGATTGTGGTGATGGGGACCTGATCC-CAGCAGTCACAAGTCAC
i calJac3.chr4             I 315 C 0
s saiBol1.JH378327            35581 47 -    750284 TTGATGATTGTGGTGATGGGGACCTGATCC-CAGCAGTCACGGGTCAC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1286867 47 -   1771730 TTGATGGTTGTGGTGATGGGGACCTGATCC-CCACAGTCACAGGTCAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     401426 45 -    486031 TTGATGACTGTGGTGATAGGGACCTGATTC-CAGCAGTCACAGGTC--
i aotNan1.NW_018496901v1   C 0 I 73841
s proCoq1.NW_012149775v1     639104 48 -   1411461 CAGATGATTGTGGTGATGGGGACCTGGTCCTCAGCAGTCACAGGTCAG
i proCoq1.NW_012149775v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=2090551.000000
s hg38.chr6_GL000254v2_alt  1836255 219 +   4827813 AGGGGAAGGT-CCCTGCT-GAAGACAGACCT-CAGAAGGGCAGTTGATCCA-GGACCCACACCTGCTTTCTTCACGTTTCCTGATCCTGCCCTGGGTCTGC-AGTCACAGTTCAG-GAAACTTCTCTGGGATCCAAAACTAGGAGGTTCCTCTAGGACCTTATGGCCCTGCCTCCTCCCTGGCCCCTCACAGGACATTTTCTTCCAACAGGTGGAAAAGGAGGGA
s panTro5.chr6             30683011 219 + 175400573 AGGGGAAGGT-CCCTGCT-GAAGACAGACCT-CAGAAGGGCAGTTGGTCCA-GGACCCACACCTGCTTTCTTCACGTTTCCTGATCCTGCCCTGGGTCTGT-AGTCACAGTTCTG-GAAACTTCTCTGGGATCCAAAACTAGGAGGTTCCTCTAGGACCTTATGGCCCTGCCTCCTCCCTGGCCCCTCACAGGACATTTTCTTCCAACAGGTGGAAAAGGACGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31106981 219 + 173848474 AGGGGAAGGT-CCCTGCT-GAAGACAGACCT-CAGAAGGGCAGTTGGTCCA-GGACCCACACCTGCTTTCTTCACGTTTCCTGATCCTGCCCTGGGTCTGT-AGTCACAGTTCTG-GAAACTTCTCTGGGATCCAAAACTAGGAGGTTCCTCTAGGACCTTATGGCCCTGCCTCCTCCCTGGCCCCTCACAGGACATTTTCTTCCAACAGGTGGAAAAGGACGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612315 219 +   2037526 AGGGGAAGGT-CCCTGCT-GAAGACAGACCT-CAGAAGGGCAGTTGGTCCA-GGACCCACACCTGCTTTCTTCACGTTTCCTGATCCTGCCCTGGGTCTGC-AGTCACAGTTCTG-GAAACTTCTCTGGGATCCAAAACTAGGAGGTTCCTCTAGGACCTTATGGCCCTGCCTCCTCCCTGGCCCCTCACAGGACATTTTCTTCCAACAGGTGGAAAAGGACGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31200304 222 + 172585720 AGGAGAAGTCGCCCTGCTGGAGGACAGACCT-CAGGAGGGCAGTTGGTCCAGGGACCCACATTTGCTTTCTTCATGTTTCCTGATCCTGCCCTGGTTCTGC-AGTCACAGTTCTGAGATACTTCTCT-GGATCCAAGACTAGGAGGTTCCTCGAGGACCTTGTGGCCCTGCCTCCTCCCTGGCCCCTCACAGGACATTTCCTTCCAACAGGTAGAAAAGGAGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30484554 219 - 170955103 AGGGGAAGGT-CCCTGCT-GAGGACAGACCT-CAGGAGGGCAGTTGGTCCA-GGACCCACAATTGCTTTCTTCATGTTTCCTGATCCTGCCCTGGGTCTGC-AGTCACAGTTCTG-GATACTTCTCTGGGATCCAAGACTAGGAGGTTCCTTGAGGACCTTGTGGCCCTGCCTCCTCCCTGGCCCCTCACAGGACATTTTCTTCCAACAGGTAGAAAAGGAGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     779607 219 +   1495729 AGGGGAAGGT-CCCTGCT-GAGGACAGACCT-CAGGAGGGCAGTTGGTCCA-GGACCCACACTTGCTTTCTTCATGTTTCCTGAACCTGCCCTGGGTCTGC-AGTCACAGTTCTG-GATACTTCTCTGGGATCCAAGACTAGGAGGTTCCTCGAGGACCTTGTGGCCCTGACTCCTCCCTGGCCCCTCACAGGACATTTTCTTCCAACAGGTAGAAAAGGACGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      12284 219 -    811324 AGGGGAAGGT-CCCTGCT-GAGGACAGACCT-CAGGAGGGCAGTTGGTCAA-GGACCCACACTTGCTTTCTTCATGTTTCCTGATCTTGCCCTGGGTCTGC-AGTCACAGTTCTG-GATACTTCTCTGGGATCCAAGACTAGGAGGTTCCTCTAGGACCTTATGGCCCTGCCTCCTCCCTGGCCCCTCACAGGACATTTTCTTCCAACAGGTAGAAAAGGAGGGA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30052974 219 -  71996105 AGGGGAAGGT-CCCTGCT-GAGGACAGACCT-CAGGAGGGCAGTTGGTCCA-GGACCCACACTTGCTTTCTTCATGTTTCCTGATCTTGCCCTGGGTCTGC-AGTCACAGTTCTG-GATACTTCTCTGGGATCCAAGACTAGGAGGTTCCTCTAGGACCTTATGGCCCTGCCTCCTTCCTGGCCCCTCACAGGACATTTTCTTCTAACAGGTAGAAAAGGAGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      46994 219 +    779361 AGGGGAAGGT-CCCTGCT-GAGGACAGACCT-CAGGAGGGCAGTTGGTCCA-GGACCCACAATTGCTTTCTTCATGTTTCCTGATCTTGCCCTGGGTCTGC-AGTCACAGTTCTG-GATACTTCTCTGGGATCCAAGACTAGGAGGTTCCTCTAGGACCTTATGGCCCTGCCTCCTCCCTGGCCCCTCACAGGACATTTTCTTCTAACAGGTAGAAAAGGATGGA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     704702 219 -   1829203 AGGGGAAGGT-CCCTGCT-GAGGACAGACCT-CAGGAGGGCAGTTGGTCCA-GGACCCACACTTGCTTTCTTCATGTTTCCTGATCCTGCCCTGGGTCTGC-AGTCACAGTTCTG-GATACTTCTCTGGGATCCAAGACTATGAGGTTCCTCTAGGACCTTATGGCCCTGCCTCCTCCCTGGCCCCTCACAGGACATTTTCTTCCAACAGGTAGAAAAGGAGGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30869939 219 + 171630274 AAGGGAAGGT-CCTTTCT-GAGGACAGACCT-CAGGAGGGCAGTTGGTGCA-GGACCCACACCTGCTTTCCTCATGTTTCCTGATCCTGCCCTGAGTCTGC-AGTCACAGTTTTG-GAAACTTCTCTGGGGTCCAAGACTAGGGGGTTCCTCTAGGACCTTGTGGCTCTGCCTCTTCCTTGTCCCCTCACAGGACATTTTCTTCTGACAGGTGGAAAAGGAGGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            35628 219 -    750284 AAGGGAAGGT-CCCTGCT-GAGGACAGACCT-CAGGAGGACAGCTGGTCCA-GGACCCACTTCTGCTTTCCTCATGTTTCCTGATCCTGCCCTGGGTCTGC-AGTCACAGTTCTG-GAAATTTCTCTGGGGTCCAAGACTAGGGGATTCCTCTAGGACCTTGTGGCTCTGCCTTCTCCTTGTCCCCTCACAGGACATTTTCTTCCCACAGGTGGAAAAGGAGGGA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1286914 219 -   1771730 AAGGGAAGGT-CCCTACT-GAGGACAGTCCT-TAGGAGGGCAGTTGGTCCA-GGACCCACATCTGCTTTCCTGATGTTTCCTGATCCTGCCCTGGGTCTTC-AGTCACAGTTCTG-GAAACTTCTCTGGGGTCTGAGACTAGGGGGTTCCTCTAGGACCTTGTGGCTCTGCCTTCTCCTTGTCCGCTCACAGGACATTTTCTTCCCACAGATAGAAAAGGAGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     475312 216 -    486031 AGGGAAGGGT-CCCTGCT-AAGGACAGACCT-CAGGAGG-CAGTTGGT-CA-GGACCCACAGCTGCTTT-CTCATGTTTCCTGATCCTGCCATGGGTCTGCAAGTCACAGTTCTG-GAAAC-TCTCCGGGGTCCAAGACTAGGGGGTTCCTCTAGGAACTTGTGGCTCTGCCTTCTCCTTGTCCCCTCACAAGACATTTTCTTCCCACAGATGGAAAGGGAGGGA
i aotNan1.NW_018496901v1   I 73841 C 0
s proCoq1.NW_012149775v1     639152 205 -   1411461 AGGGGAAGGT-GTCTGCC-AAGGACAGACCTCCAGGAGGGCAACTGGTCCA-GGCCCT-------CCTTTCTTATATTTCTTGATCTTGCCCTGGGTCTAT-AGACACAGTTCTG-GAAACTTCTCTGGGATCCAAGA--------TTCCTCTAGGACCTCATGGCCCTGCCTCCTCTCTAGCCTCTCACAGGACATTTTCTTCCCACAGGTGGAAAGGGAGGGA
i proCoq1.NW_012149775v1   C 0 I 113
e mm10.chr17               58956779 36400 -  94987271 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=537112.000000
s hg38.chr6_GL000254v2_alt  1836474 75 +   4827813 GCTACTCTAAGGCTGAGTGTAAGTG--CGGG--------------GCGGGAGCG-TGGAGG-AGCTCGCCCACCCTATAATTCCTCCTG-CACC
s panTro5.chr6             30683230 75 + 175400573 GCTACTCTAAGGCTGAGTGTAAGTG--CGGG--------------GCGGGAGCG-TGGAGG-AGCTCACCCACCCTATAATTCCTCCTG-TACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107200 75 + 173848474 GCTACTCTAAGGCTGAGTGTAAGTG--CGGG--------------GTGGGAGCG-TGAAGG-AGCTCACCCACCCTATAATTCCTCCTG-TACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612534 75 +   2037526 GCTACTCTAAGGCTGAGTGTAAGTG--CGGG--------------GCGGGAGCG-TGGAGG-AGCTCACCCACCCTATAATTCCTCCTG-CACC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31200526 73 + 172585720 GCTACTCTCAGGCTTC--GTAAGTA--GGGG----------------CGGAGTGTTGGAGG-AGCTCGCCCACCCCATAATTCCTCCCGTCACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30484773 75 - 170955103 GCTACTCTCAGGCTTCGTGTAAGTA--GGGG--------------GCGGGAGTG-TGGAGG-AGCTCGCCCACCCCATAATTCCTCCTG-CACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     779826 75 +   1495729 GCTACTCTCAGGCTTCGTGTAAGTA--GGGG--------------GCAGGAGTG-TGGAGG-AGCTCGCCCACCCCATAATTCCTCCTG-CACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      12503 77 -    811324 GCTACTCTCAGGCTGTGTGTAAGTGACGGGG--------------GCGGGAGTG-TGGAGG-AGCTTGCCCACCCTATAATTCCTCCTG-CACC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053193 77 -  71996105 GCTACTCTCAGGCTGAGTGTAAGTGACGGGG--------------GCGGGAGTG-TGGAGG-AGCTCGCCCATCCCATAATTCCTCCTG-CACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47213 77 +    779361 GCTACTCTCAGGCTGTGTGTAAGTGATGGGG--------------GCGGGAGTG-TGGAGG-AGCTCGCCCACCCCACAATTCCTCCTG-CACC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     704921 75 -   1829203 GCTACTCTCAGGCTTGGTGTAAGTA--GGGG--------------GCGGGAGTG-TGGAGG-AGCTCGCACACCCCATAATTCCTCCTG-CACC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30870158 75 + 171630274 GCTACTTTCAGGCTGCGTGTAAGTG--GGGG--------------CTGGGAGTG-TGGAGG-AGCTCACCCACCCCATAATTCCTCCTG-GCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            35847 74 -    750284 GCTACTCTCAGGCTTCATGTAAGTA--GGGG--------------GCAGGAGTG-TGGAGG-AG-TCACCCACCCCATAATTCCTCCTG-GCCC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1287133 89 -   1771730 GCTACTCTCAGGCTGCATGTAAGTG--GTGGGGGCACTCACCCCCCCCAGAGTG-TGGAGG-AGCTCACCCACCCCATAATTCCTCCTG-TCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     475528 76 -    486031 GCTACTCTCAGGCTGCGTGTAAGTG--GTGGGG------------GCGGGAGTG-TGGAGGCAGCTCA--CACACCATAATTCCTCCCG-GCCC
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639357 113 -   1411461 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=328949.000000
s hg38.chr6_GL000254v2_alt  1836549 33 +   4827813 ACAT-CTCCTGTGGGCTCTGACCAGGTCTTGTTT
s panTro5.chr6             30683305 33 + 175400573 ACAT-CTCCTGTGGGCTCTGACCAGGTCTTGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107275 33 + 173848474 ACAT-CTCCTGTGGGCTCTGACCAGGTCTTGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612609 33 +   2037526 ACAT-CTCCTGTGGGCTCTGACCAGGTCTTGTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31200599 34 + 172585720 ACATCCTTCTGTGGGCTCTAACCAGTCCTTGTTT
i rheMac8.chr4             C 0 I 79
s macFas5.chr4             30484848 33 - 170955103 ACAT-CTCCTGTGGGCTCTAACCAGGTCTTGTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     779901 33 +   1495729 ACAT-CTCCTGTGGGCTCTAACCAGGTCTTGTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      12580 33 -    811324 ACAT-CTCCTGTGGGCTCTAACCAGGTCTTGTTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053270 33 -  71996105 ACGT-CTCCTGTGGGCTCTAACCAGGTCTTGTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47290 33 +    779361 ACAT-CTCCTGTGGGCTCTAACCAGGTCTTGTTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     704996 33 -   1829203 ACAT-CTCCTGTGGGCTCTAACCAGGTCTTGTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30870233 33 + 171630274 ACAT-CTCCTGCGGGCTCTGACCAGGTCCTGTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            35921 33 -    750284 ACAT-CTCCCTCAGGCTCTGACCAGGTCCTGTTT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1287222 33 -   1771730 ACAT-CTCCTGCGGGCTCTGACCGGGTCCTGTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     475604 33 -    486031 ACAT-CTCCCGCGGGCTCTGACCAGGTCCTGTTT
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     639470 33 -   1411461 ACAT-CTCCTGTGGGCTCTGACCAGGTCCTGTTA
i proCoq1.NW_012149775v1   I 113 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=65359.000000
s hg38.chr6_GL000254v2_alt  1836582 7 +   4827813 TTGTTCT
s panTro5.chr6             30683338 7 + 175400573 TTGTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107308 7 + 173848474 TTGTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612642 7 +   2037526 TTGTTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             30484881 7 - 170955103 TTGTTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     779934 7 +   1495729 TTGTTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      12613 7 -    811324 TTGTTCT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053303 7 -  71996105 TTGTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47323 7 +    779361 TTGTTCT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705029 7 -   1829203 TTGTTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30870266 7 + 171630274 TTGTTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            35954 7 -    750284 TTGTTCT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1287255 7 -   1771730 CTGTTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     475637 7 -    486031 TTGTTCC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     639503 7 -   1411461 TTGTTCT
i proCoq1.NW_012149775v1   C 0 I 3239
e mm10.chr17               58956779 36400 -  94987271 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e rheMac8.chr4             31200633 79 + 172585720 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=460388.000000
s hg38.chr6_GL000254v2_alt  1836589 65 +   4827813 ACCCCAGGGAGCGACAGTGCCCAGGGGTCTGA---G--TCTCACAGCTTGTAAAGGTGA-GATTCTGGGGG
s panTro5.chr6             30683345 67 + 175400573 ACCCCAGGGAGCGACAGTGCCTAGAGGTCTGA---GTCTCTCACAGCTTGTAAAGGTGA-GATTCTGGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107315 67 + 173848474 ACCCCAGGGAGCGACAGTGCCTAGAGGTCTGA---GTCTCTCACAGCTTGTAAAGGTGA-GATTCTGGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612649 67 +   2037526 ACCCCAGGGAGCGACAGTGCCTAGGGGTCTGA---GTCTCTCACAGCTTGTAAAGGTGA-GATTCTGGGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             30484888 70 - 170955103 ACCCCAGGTAGCGACAGTACCCAGGGATCTGATGAGTCTCTCACAGCTTATAAAAGTGA-GATTCTGGGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     779941 70 +   1495729 ACCCCAGGTAGCGACAGTGCCCAGGGATCTGATGAGTCTCTCACAGCTTATAAAGGTGA-GATTCTGGGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      12620 70 -    811324 ACCCCAGGTAGCGACGGTGCCCAGGGATCTGATGAGTCTCTCACAGCTTATAAACGTGA-GATTCTGGGGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053310 70 -  71996105 ACCCCAGGTGGTGACAGTGCCCAGGGATCTGATGTGTCTCTCACAGCTTGTAAAGGTGA-GATTCTGGGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47330 70 +    779361 ACCCCAGGTAGCGACAGTTCCCAGGGATCTGATGATTCTCTCACAGCTTGTAAAGGTGA-GATTCTGGGGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705036 70 -   1829203 ACCCCAGGTAGCGATAGTGCCCAGGGATCTGATGAGTCTCTCACAGCTTATAAAGGTGA-GATTCTGGGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30870273 70 + 171630274 ACCCCAGGCAACGACAGTGCCCAGGGCTCTGATGTGTCTCTCACAGGTTGTAAAGGTGA-GACCCTGGGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            35961 70 -    750284 ACCCCAGCCAGCGACAGTGCCCAGGGCTCTGATCTGTCTCTCACAGCTTGTAAAGGAGA-GACCCTGGGGG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1287262 70 -   1771730 ACCCCAGGCAGCGACAGTGCCCAGGGCTCCGATGTGTCTCTCCTGGCTTGTAAAGGTAA-GACCCTGGGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     475644 71 -    486031 ACCCCAGGCAGCGACAGTGCCACGGGCTCTGATGTGTCTCTCCTGGCTTGTAAAGGTGAGGACCCTGGTGG
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e rheMac8.chr4             31200633 79 + 172585720 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=198218.000000
s hg38.chr6_GL000254v2_alt  1836654 22 +   4827813 TCTGAAGTGGGTGGAGGGTGGG
s panTro5.chr6             30683412 22 + 175400573 TCTGAAGTGGGTGGAGGGTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107382 22 + 173848474 TCTGAAGTGGGTGGAGGGTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612716 22 +   2037526 TCTGAAGTGGGTGGAGGGTGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31200712 22 + 172585720 TCTGAAGTGGGTGGAGGGTGGG
i rheMac8.chr4             I 79 I 81
s macFas5.chr4             30484958 22 - 170955103 TCTGAAGTGGGTGGAGGGTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     780011 22 +   1495729 TCTGAAGTGGGTGGAGCGTGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      12690 22 -    811324 TCTGAAGTGGGTGGAGGGTGGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053380 22 -  71996105 TCTGAAGTGGGTGGAGGGTGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47400 22 +    779361 TCTGAAGTGGGTGGAGGGTGGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705106 22 -   1829203 TCTGAAGTGGGTGGAGGGTGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30870343 22 + 171630274 TCTGAAGTGGGTGTGGGGTGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            36031 22 -    750284 TCTGAATTGGGTGGGGGGTGGG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1287332 22 -   1771730 TCTGAAGTGGGTGGTGAGTGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     475715 21 -    486031 TCTGAAGT-GGTGGGGGGTGGG
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=100949.000000
s hg38.chr6_GL000254v2_alt  1836676 15 +   4827813 GCAGAGGGGACAGGA
s panTro5.chr6             30683434 15 + 175400573 GCAGAGGGGACAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107404 15 + 173848474 GCAGAGGGGACAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612738 15 +   2037526 GCAGAGGGGACAGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             30484980 15 - 170955103 GCAGATGGGACAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     780033 15 +   1495729 GCAGATGGGACAGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      12712 15 -    811324 GCAGATGGGACAGGA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053402 15 -  71996105 GCAGATGGGACAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47422 15 +    779361 GCAGATGGGACAGGA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705128 10 -   1829203 GCACATG-----GGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30870365 15 + 171630274 GCAGAGGGGACAGGA
i calJac3.chr4             C 0 N 0
s saiBol1.JH378327            36053 15 -    750284 GCAGAGGGGACAGGA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1287354 15 -   1771730 GCAGAGGGGTCAGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     475736 15 -    486031 GCAGAGGGGTCAGGA
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e rheMac8.chr4             31200734 81 + 172585720 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=52494.000000
s hg38.chr6_GL000254v2_alt  1836691 7 +   4827813 CTGGGTT
s panTro5.chr6             30683449 7 + 175400573 CTGGGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107419 7 + 173848474 CTGGGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612753 7 +   2037526 CTGGGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             30484995 7 - 170955103 CTGGGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     780048 7 +   1495729 CTGGGTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      12727 7 -    811324 CTGGGTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053417 7 -  71996105 CTGGGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47437 7 +    779361 CTGGGTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705138 7 -   1829203 CTGGGTT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            36068 7 -    750284 CTGGGTT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1287369 7 -   1771730 CTGGGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     475751 7 -    486031 CTGGGTT
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e rheMac8.chr4             31200734 81 + 172585720 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=278377.000000
s hg38.chr6_GL000254v2_alt  1836698 41 +   4827813 GTGGGGATTTTTTGATTCAGAATTTTTGAGTGTGTGGTGGG
s panTro5.chr6             30683456 41 + 175400573 GTGGGGATTTTTTGATTCAGAATTTTTGAGTGTGTGGTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107426 41 + 173848474 GTGGGGATTTTTTGATTCAGAATTTTTGAGTGTGTGGTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612760 41 +   2037526 GTGGGGATTTTTTGATTCAGAATTTTTGAGTGTGTGGTGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             30485002 41 - 170955103 GTGGGGATTTTTTGCTTTGGAATTTTTGAGTGTGTGGTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     780055 41 +   1495729 GTGGGGATTTTTTGCTTTGGAATTTTTGAGTGTGTGGTGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      12734 41 -    811324 GTGGGGATTTTTTGATTTGGAATTTTTGAGTGTGTGGTGGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053424 41 -  71996105 GTGGGGATTTTTTGCTTTGGAATTTTTGAGTGTGTGGTGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47444 41 +    779361 GTGGGGATTTTTTGATTTGGAATTTTTGAGTGTGTGGTGGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705145 37 -   1829203 GTGGGGATTTTTTGATTCGGAATTTTTGA----GTGGTGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30769669 41 + 171630274 ATGGGGATTTGTTGATTTGGAATTTTTTATTGTGTGATGGG
i calJac3.chr4             N 0 N 0
s saiBol1.JH378327            36075 41 -    750284 ATGGGGATTTTTTGATTGGGAACTTTTGAGTGTGTGATGAG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1287376 41 -   1771730 ATGGGGTTTTTTTTATTCGGAACTTTTGAGTGTATGGTGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     475758 40 -    486031 ATGGGGGTTTTTTGATTGGAAAC-TTTGAGTGTGTGGTGAG
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e rheMac8.chr4             31200734 81 + 172585720 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=65161.000000
s hg38.chr6_GL000254v2_alt  1836739 8 +   4827813 CTGTTCAG
s panTro5.chr6             30683497 8 + 175400573 CTGTTCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107467 8 + 173848474 CTGTTCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612801 8 +   2037526 CTGTTCAG
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             30485043 8 - 170955103 CTGTTCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     780096 8 +   1495729 CTGTTCAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      12775 8 -    811324 CTGTTCAG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053465 8 -  71996105 CTGTTCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47485 8 +    779361 CTGTTCAG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705182 8 -   1829203 CTGTTCAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30870380 8 + 171630274 CTTTTCAG
i calJac3.chr4             N 0 C 0
s saiBol1.JH378327            36116 8 -    750284 CTGTTCAG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1287417 8 -   1771730 CTGTTCAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     475798 8 -    486031 CTATTCAG
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e rheMac8.chr4             31200734 81 + 172585720 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=496456.000000
s hg38.chr6_GL000254v2_alt  1836747 69 +   4827813 AGTGTCATCACTTACCGTGACTGACCTGAATTTGTTCATG---ACTATTTTCTTCT-GTAGCCTGAG------------ACAGCT
s panTro5.chr6             30683505 69 + 175400573 AGTGTCATCACTTACCGTGACTGACCTGAATTTGTTCATG---ACTATTTTCTTCT-GTAGCCTGAG------------ACAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107475 69 + 173848474 AGTGTCATCACTTACCGTGACTGACCTGAATTTGTTCATG---ACTATTTTCTTCT-GTAGCCTGAG------------ACAGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612809 69 +   2037526 AGTGTCATCACTTACCGTGACTGACCTGAATTTGTTCATG---ACTGTTTTCTTCT-GTAGCCTGAG------------ACAGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31200815 76 + 172585720 AGTGTCATCACTTACTGTGACTGA-CTGAATGTGTTCATGGGAACTGTTTTC-TCT-GTAGCCTGAGACAGCTGCCTTG------
i rheMac8.chr4             I 81 I 14
s macFas5.chr4             30485051 63 - 170955103 AGTGTCATCACTTACTGTGACTGACCTGAATTTGTTCATG---ACTGTTTTCTTCT-GTAGCCTGAG------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     780104 63 +   1495729 AGTGTCATCACTTACTGTGACTGACCTGAATTTGTTCATG---ACTGTTTTCTTCT-GTAGCCTGAG------------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      12783 64 -    811324 AGTGTCATCACTTACTGTGACTGACCTGAATTTGTTCATG---ACTGTTTTCTTCTAGTAGCCTGAG------------------
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053473 63 -  71996105 AGTGTCATCACTTACTGTGACTGACCTGAATTTGTTCATG---ACTGTTTTCTTCT-GTAGCCTGAG------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47493 63 +    779361 AGTGTCATCACTTACTGTGACTGACCTGAATTTGTTCATG---ACTGTTTTCTTCT-GTAGCCTGAG------------------
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705190 63 -   1829203 AGTGTCATCACTTACTGTGACTGACCTGAATTTGTTCATG---ACTGTTTTCTTCT-GTAGCCTGAG------------------
i colAng1.NW_012115577v1   C 0 I 10
s calJac3.chr4             30870388 59 + 171630274 AGTGTCATCACT----------GATCTGAATTTGTTCATG---ACTATTTTCTTCT-GTAGTCTGAG------------ACAGCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            36124 67 -    750284 G--GTCATCACTTACTGTGACGGATCTGAATTTGTTCATG---ACTGTTTTTTTCT-GCAGTCTGAG------------ACAGCT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1287425 67 -   1771730 T--GTCATCACTTACTGTGACTGATCTGAATTTGTTCATG---ACTATTTTCTTCT-GTAGCCTGAG------------ACAGCT
i cebCap1.NW_016107755v1   C 0 T 81833
s aotNan1.NW_018496901v1     475806 69 -    486031 AGTGTCATCACTTACTGTGACTGATCTGAATTTGTTCATG---ACTATTTTCTTCT-GTAGCCTGAG------------ACAGCT
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=13387.000000
s hg38.chr6_GL000254v2_alt  1836816 6 +   4827813 GCCTTG
s panTro5.chr6             30683574 6 + 175400573 GCCTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107544 6 + 173848474 GCCTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612878 6 +   2037526 GCCTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30870447 6 + 171630274 ACCTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            36191 6 -    750284 ACCTTG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1205659 6 -   1771730 GCCTTG
i cebCap1.NW_016107755v1   T 81833 I 9
s aotNan1.NW_018496901v1     475875 6 -    486031 ACTTTG
i aotNan1.NW_018496901v1   C 0 I 1
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e colAng1.NW_012115577v1     705253 10 -   1829203 I
e manLeu1.NW_012106264v1      47556 0 +    779361 C
e chlSab2.chr17            30053536 0 -  71996105 C
e cerAty1.NW_012002513v1      12847 0 -    811324 C
e macNem1.NW_012012100v1     780167 0 +   1495729 C
e macFas5.chr4             30485114 0 - 170955103 C
e rheMac8.chr4             31200891 14 + 172585720 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=546.000000
s hg38.chr6_GL000254v2_alt  1836822 1 +   4827813 T
s panTro5.chr6             30683580 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107550 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612884 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e saiBol1.JH378327            36197 0 -    750284 C
e otoGar3.GL873550           634686 4380 +  18854210 I
e aotNan1.NW_018496901v1     475881 1 -    486031 I
e cebCap1.NW_016107755v1    1205665 9 -   1771730 I
e calJac3.chr4             30870453 0 + 171630274 C
e colAng1.NW_012115577v1     705253 10 -   1829203 I
e manLeu1.NW_012106264v1      47556 0 +    779361 C
e chlSab2.chr17            30053536 0 -  71996105 C
e cerAty1.NW_012002513v1      12847 0 -    811324 C
e macNem1.NW_012012100v1     780167 0 +   1495729 C
e macFas5.chr4             30485114 0 - 170955103 C
e rheMac8.chr4             31200891 14 + 172585720 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=1000.000000
s hg38.chr6_GL000254v2_alt  1836823 1 +   4827813 G
s panTro5.chr6             30683581 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107551 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612885 1 +   2037526 G
i gorGor5.CYUI01015528v1   C 0 C 0
s aotNan1.NW_018496901v1     475882 1 -    486031 G
i aotNan1.NW_018496901v1   I 1 T 73472
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e saiBol1.JH378327            36197 0 -    750284 C
e otoGar3.GL873550           634686 4380 +  18854210 I
e cebCap1.NW_016107755v1    1205665 9 -   1771730 I
e calJac3.chr4             30870453 0 + 171630274 C
e colAng1.NW_012115577v1     705253 10 -   1829203 I
e manLeu1.NW_012106264v1      47556 0 +    779361 C
e chlSab2.chr17            30053536 0 -  71996105 C
e cerAty1.NW_012002513v1      12847 0 -    811324 C
e macNem1.NW_012012100v1     780167 0 +   1495729 C
e macFas5.chr4             30485114 0 - 170955103 C
e rheMac8.chr4             31200891 14 + 172585720 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=461.000000
s hg38.chr6_GL000254v2_alt  1836824 14 +   4827813 TGCGACTGAGATGC
s panTro5.chr6             30683582 14 + 175400573 TGCGACTGAGATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107552 14 + 173848474 TGCGACTGAGATAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612886  3 +   2037526 TGC-----------
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30870453  5 + 171630274 ------TGAGA---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            36197  5 -    750284 ------TGAGA---
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e aotNan1.NW_018496901v1     475883 73472 -    486031 T
e cebCap1.NW_016107755v1    1205665  9 -   1771730 I
e colAng1.NW_012115577v1     705253 10 -   1829203 I
e manLeu1.NW_012106264v1      47556  0 +    779361 C
e chlSab2.chr17            30053536  0 -  71996105 C
e cerAty1.NW_012002513v1      12847  0 -    811324 C
e macNem1.NW_012012100v1     780167  0 +   1495729 C
e macFas5.chr4             30485114  0 - 170955103 C
e rheMac8.chr4             31200891 14 + 172585720 I
e nomLeu3.chr1a            75284516 4063 + 122973662 M

a score=61367.000000
s hg38.chr6_GL000254v2_alt  1836838 21 +   4827813 ACAGCTGCCTTGTGTGCGACT
s panTro5.chr6             30683596 21 + 175400573 ACAGCTGCCTTGTGTGTGACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107566 21 + 173848474 ACAGCTGCCTTGTGTGTGACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612889  4 +   2037526 -----------------GACT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75288587 21 + 122973662 ACAGCTGCGTTGTGTGCGACT
i nomLeu3.chr1a            M 4063 C 0
s macFas5.chr4             30485114 21 - 170955103 ACAGCTGCCTTGTGTGCGACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     780167 21 +   1495729 ACAGCTGCCTTGTGTGTGACT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      12847 21 -    811324 ACAGCTGCCTTGTGTGCGACT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053536 21 -  71996105 ACAGCTGCCTTGTGTGCGACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47556 21 +    779361 ACAGCTGCTTCATGTGCGACT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705263 11 -   1829203 ----------CTTGTGCGACT
i colAng1.NW_012115577v1   I 10 C 0
s calJac3.chr4             30870458  4 + 171630274 -----------------GACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            36202  4 -    750284 -----------------GACA
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e aotNan1.NW_018496901v1     475883 73472 -    486031 T
e cebCap1.NW_016107755v1    1205665  9 -   1771730 I
e rheMac8.chr4             31200891 14 + 172585720 I

a score=5947.000000
s hg38.chr6_GL000254v2_alt  1836859 1 +   4827813 G
s panTro5.chr6             30683617 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107587 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612893 1 +   2037526 G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75288608 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30485135 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     780188 1 +   1495729 G
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      12868 1 -    811324 G
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053557 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47577 1 +    779361 G
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705274 1 -   1829203 G
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30870462 1 + 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            36206 1 -    750284 A
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1205674 1 -   1771730 G
i cebCap1.NW_016107755v1   I 9 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e aotNan1.NW_018496901v1     475883 73472 -    486031 T
e rheMac8.chr4             31200891 14 + 172585720 I

a score=20055.000000
s hg38.chr6_GL000254v2_alt  1836860 2 +   4827813 AG
s panTro5.chr6             30683618 2 + 175400573 AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107588 2 + 173848474 AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612894 2 +   2037526 AG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75288609 2 + 122973662 AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31200905 2 + 172585720 AG
i rheMac8.chr4             I 14 C 0
s macFas5.chr4             30485136 2 - 170955103 AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     780189 2 +   1495729 AG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      12869 2 -    811324 AG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053558 2 -  71996105 AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47578 2 +    779361 AG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705275 2 -   1829203 AG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30870463 2 + 171630274 AG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            36207 2 -    750284 AG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1205675 2 -   1771730 AG
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e aotNan1.NW_018496901v1     475883 73472 -    486031 T

a score=282018.000000
s hg38.chr6_GL000254v2_alt  1836862 36 +   4827813 ATGCAGGATTTCCTCACGCCTCCCCTATGTGTCTTA-
s panTro5.chr6             30683620 36 + 175400573 ATGCAGGATTTCCTCACGCCTCCCCTTTGTGTCTTA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107590 36 + 173848474 ATGCAGGATTTCCTCACGCCTCCCCTTTGTGTCTTA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612896 36 +   2037526 ATGCAGGATTTCCTCACGCCTCCCCTTTGTGTCTTA-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75288611 36 + 122973662 ATGCAGGATTTCTTCACGCCTCCCCTTTGTGTCCTA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31200907 36 + 172585720 ATGCAGGATTTCTTCATGCCTCCCCTTTGTGTCTTA-
i rheMac8.chr4             C 0 I 93
s macFas5.chr4             30485138 36 - 170955103 ATGCAGGATTTCTTCACGCCTCCCCTTTGTGTCTTA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     780191 36 +   1495729 ATGCAGGATTTCTTCACGCCTCCCGTTTGTGTCTTA-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      12871 36 -    811324 ATGCAGGATTTCTTCACGCCTCCCCTTTGTGTCTTA-
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053560 36 -  71996105 ATGCAGGATTTCTTCACACCTCACCTTTGTGTCTTA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47580 36 +    779361 ATGCAGGATTTCTTCACGCCTCCCCTTTGTGTCTTA-
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705277 36 -   1829203 ATGCAGGATTTCTTCATGCCTCCCCTTTGTGTCTTA-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30870465 36 + 171630274 ATTGAGGATTCCTCCATGCC-TCGCTTTATGAGCTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            36209 36 -    750284 ATCGGGGATTCCTCCACGCC-TCGCTTTATGAGCTCA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1205677 37 -   1771730 ATGTAGGATTTCTTCACGCCTTCCCTTTATGACTTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     402411 37 -    486031 ATGTAGGATTTCTTCACGCCTCCCCTTTGTGACTTCA
i aotNan1.NW_018496901v1   T 73472 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e otoGar3.GL873550           634686 4380 +  18854210 I

a score=660026.000000
s hg38.chr6_GL000254v2_alt  1836898  94 +   4827813 GGGGACTCTGGCTTCTCTTTTTGCAAGGGCCTCTGAATCTGTCTGTGTCCCTGTTAGC-------------ACAATGTGAGGAGGTAGAGAAACAGTCCACCTCTGT
s panTro5.chr6             30683656  94 + 175400573 GGGGACTCTGCCTTCTCTTTTTGCAAGGGCCTCTGAATCTGTCTGTGTCCCTGTTAGC-------------ACAATGTGAGGAGGTAGAGAAACAGTCCACCTCTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107626  94 + 173848474 GGGGACTCTGGCTTCTCTTTTTGCAAGGGCCTCTGAATCTGTCTGTGTCCCTGTTAGC-------------ACAATGTGAGGAGGTAGAGAAACAGTCCACCTCTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     612932  90 +   2037526 GGGGACTCTGGCTTCTCTTTTTGCAAGGGCCTCTGAATCTGTCTGTGTCCCTGTTAGC-------------ACAATGTGAGGAGGT----AAACAGTCCACCTCTGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75288647  93 + 122973662 GGGGACTCTGGCTTCTC-TTTTGCAAGGGCCTCTGAATCTGTCTGTGTCCCTGTTAGC-------------ACAATGTGAGGAGGTAGAGAAACAGTCCACCTCTGT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30485174  94 - 170955103 AGGGACTCTGGCTTCTCTTTTTGCAAGGGCCTCTGAATCTGTCTGTGTCCCTGTTAGC-------------ATAATATGAGGAGGCTGACATACACTCCACCTCCGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     780227 107 +   1495729 AGGGACTCTGGCTTCTCTTTTTGCAAGGGCCTCTGAATCTGTCTGTGTCCCTGTGAATAAACACAGGGATAATAATGTGAGGAGGTGGACAAACACGCCACCTCCAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      12907  93 -    811324 AGGGACTCTGGCTTCTC-TTTTGCAAGGGCCTCTGAATCTGTCTGTGTCCCTGTTAGC-------------ATAATATGAGGAGGCAGACAAACACTCCACCTCCAT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053596  93 -  71996105 AGGGGCTCTGGCTTCTC-TTTTGCAAGGGCCTCTGAATCTGTCTCTGTCCCTGTTAGC-------------ATAATGTGAGGAGGCGGACAAACACTCCACCTCCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47616  94 +    779361 AGGGACTCTGGCTTTGCTTTTTGCAAGGGCCTCTGAATCTGTCTGTGTCCCTGTTAGC-------------ATAATATGAGGAGGCAGACAAACATTCCACCTCCAT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705313  94 -   1829203 AGGGACTCTGGCTTCTCTTTTTGCAAGGGCCTCTGAATCTGTCTGTGTCCCTGTTAGC-------------ATAATGTGAGGAGGCAGACAAACACTCCACCTCTGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30870501  77 + 171630274 GGAGACTCTGCCTTCTTTTTCTGCAAAGGCA-----------------TCCTGTTAGC-------------ATAATAGGAGGATGTGGAGACACAGCCCATCCCAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            36245  94 -    750284 AGAGACTCTGCCTTCTCTTTCTGCAAAGGCATCTGCATGTACCTGTGTTCCTTTTAGT-------------ATAATATGAGGAGGTGGAGACACAGCCCACCCCGGT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1205714  94 -   1771730 AGAGATTCTGACTTCTCTTTCTGCAAAGGCGTCTGAATATATCTGGGTCCCTGTTAGC-------------ATAATGTGAGGAAGTGGAGAGACAGTCTGCCCTCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     402448  94 -    486031 AGAGACTCTGACTTCTCTTTCTGCAAAGGCATCTGAATATATCTGGGTCCCTGTTAGC-------------ATAATGTGAGGAAGTGGAGAGACAACCTACCTCCTT
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e otoGar3.GL873550           634686 4380 +  18854210 I
e rheMac8.chr4             31200943  93 + 172585720 I

a score=353907.000000
s hg38.chr6_GL000254v2_alt  1836992 37 +   4827813 GTCTACCATGACCCCC--TTCCTCACACTGACCTGTGTT
s panTro5.chr6             30683750 37 + 175400573 GTCTACCATGACCCCC--TTCCTCACACTGACCTGTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107720 37 + 173848474 GTCTACCATGACCCCC--TTCCTCACACTGACCTGTGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     613022 37 +   2037526 GTCTACCATGACCCCC--TTCCTCACACTGACCTGTGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75288740 37 + 122973662 GTCTACCATGACCCCC--TACCTCACAGTGACCTGTGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31201036 38 + 172585720 GTCTACCATGACCCCCTTTTCCTC-CACTGACCTGTGTG
i rheMac8.chr4             I 93 C 0
s macFas5.chr4             30485268 37 - 170955103 GTCTACCATGACCCCC--TTCCTCACACTGACCTGTGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     780334 37 +   1495729 GTCTACCATGACCCCC--TTCCTCACACTGACCTGTGTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      13000 37 -    811324 GTCTACCATGACCCCC--TTCCTCACACTGACCTGTGTG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053689 37 -  71996105 ATCTACCATGACCCCC--TTCCTCACACTGACCTGTGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47710 37 +    779361 GTCTACCATGACCCCC--TTCCTCACACTGACCTGTGTG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705407 37 -   1829203 GTCTACCATGACCCCC--TTCCTCACACTGACCTGTGTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30870578 36 + 171630274 GTCCACTATGACCCC---TTCCTCACACCGACATGTGTT
i calJac3.chr4             C 0 N 0
s saiBol1.JH378327            36339 36 -    750284 GCCCATCATGACCCC---TTCCTCACACTGACATGTGTT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1205808 37 -   1771730 GCCTACCATGACCCCT--TTCCTCACACTGACCTGTGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     402542 37 -    486031 GTCCACCATGACCCCC--TTCCTCACACTGACCTGTGTT
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e otoGar3.GL873550           634686 4380 +  18854210 I

a score=115374.000000
s hg38.chr6_GL000254v2_alt  1837029 13 +   4827813 CCTTCCCTG--TTCT
s panTro5.chr6             30683787 13 + 175400573 CCTTCCCTG--TTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107757 13 + 173848474 CCTTCCCTG--TTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     613059 13 +   2037526 CCTTCCCTG--TTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75288777 13 + 122973662 CCTTCCCTG--TTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31201074 15 + 172585720 CCTTCCCTGTTTTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30485305 13 - 170955103 CCTTCCCTG--TTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     780371 13 +   1495729 CCTTCCCTG--TTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      13037 13 -    811324 CCTTCCCTG--GTCT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053726 13 -  71996105 CCTTCCCTG--TTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47747 13 +    779361 CCTTCCCTG--TTCT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705444 13 -   1829203 CCTTCCCTG--TTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30769933 13 + 171630274 CATTCCCTC--TTCT
i calJac3.chr4             N 0 I 79
s cebCap1.NW_016107755v1    1205845 13 -   1771730 CCTTCCCTG--TTCT
i cebCap1.NW_016107755v1   C 0 I 86
s aotNan1.NW_018496901v1     402579 13 -    486031 CCTTCCCTG--TTCT
i aotNan1.NW_018496901v1   C 0 I 86
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e saiBol1.JH378327            36375  0 -    750284 C
e otoGar3.GL873550           634686 4380 +  18854210 I

a score=110775.000000
s hg38.chr6_GL000254v2_alt  1837042 21 +   4827813 ----C-TTTTCTATTAAAAATAAGAA
s panTro5.chr6             30683800 21 + 175400573 ----C-TTTTCTATTAAAAATAAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107770 21 + 173848474 ----C-TTTTCTATTAAAAATAAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     613072 21 +   2037526 ----C-TTTTCTATTAAAAATAAGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75288790 25 + 122973662 CTTAC-TTTTCTATTAAAAATAAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31201089 26 + 172585720 CCTACTTTTTCTATTAAAAATAAGAA
i rheMac8.chr4             C 0 I 5984
s macFas5.chr4             30485318 25 - 170955103 CCTAC-Ttttctattaaaaataagaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     780384 22 +   1495729 CCTAC-TTTTCTATTAAAAAT---AA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      13050 25 -    811324 CCTGC-TTTTCTATTAAAAATAAGAA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053739 25 -  71996105 CCTAC-TTTTCTATTAAAAATAAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47760 25 +    779361 CTTAC-TTTTCTATTAAAAATAAGAA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705457 22 -   1829203 CCTAC-TTTTCTATTAAAAATAA---
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e saiBol1.JH378327            36375  0 -    750284 C
e otoGar3.GL873550           634686 4380 +  18854210 I
e aotNan1.NW_018496901v1     402592 86 -    486031 I
e cebCap1.NW_016107755v1    1205858 86 -   1771730 I
e calJac3.chr4             30769946 79 + 171630274 I

a score=275769.000000
s hg38.chr6_GL000254v2_alt  1837063 64 +   4827813 CCTGggcagagtgcggcagctcatgcctgtaatcccagcacttagggaggccgaggagggcaga
s panTro5.chr6             30683821 64 + 175400573 CCTGggcagagtggggcagctcatgcctgtaatcccagcacttagggaggccgaggagggcaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107791 64 + 173848474 CCTGggcagagtggggcagctcatgcctgtaatcccagcacttagggaggccgaggagggcaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     613093 64 +   2037526 CCTGggcagagtgcggcagctcatgcctgtaatcccagcacttagggaggccgaggagggcaga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75288815 64 + 122973662 CCTGggcagagtgcggcagctcatgcctgtaatcccagcacttagggaggccgaggagggcaga
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30485343 64 - 170955103 cctgagcagagcatggccgctcacgcctataatcccagcactttgggaggccgaggtgggcaga
i macFas5.chr4             C 0 I 10828
s macNem1.NW_012012100v1     780406 64 +   1495729 CCTGAgcagagcacggcggctcacacctataatcccagcactttgggaggccgaggcgggcaga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      13075 64 -    811324 ACTGAgcagagcacggcctctcacacctataatcccagcactttgggaggccggggcaggcaga
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053764 64 -  71996105 ACTGAgcagagcgcggcggctcacacctacaatcccagcactttgggaggccgaggcgggcaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47785 64 +    779361 ACTGAgcagagcacggcggctcacacctataatcccagcactttgggaggccgagacaggcaga
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705479 64 -   1829203 CCTGAgcagagcatggcggctcacatctataatcccagcactttgggaggccaaggtgggcaga
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e saiBol1.JH378327            36375  0 -    750284 C
e otoGar3.GL873550           634686 4380 +  18854210 I
e aotNan1.NW_018496901v1     402592 86 -    486031 I
e cebCap1.NW_016107755v1    1205858 86 -   1771730 I
e calJac3.chr4             30769946 79 + 171630274 I
e rheMac8.chr4             31201115 5984 + 172585720 I

a score=259328.000000
s hg38.chr6_GL000254v2_alt  1837127 76 +   4827813 tcacgaggtcaggagatcgaaaccatcctggctaacacggtgaaaccccgtctctactaaaaaatacaaaaaatta
s panTro5.chr6             30683885 76 + 175400573 tcacgaggtcaggagatcgaaaccatcctggctaacacggtgaaaccccgtctctactaaaaaatacaaaaaatta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107855 76 + 173848474 tcacgaggtcaggagatcgaaaccatcctggctaacacggtgaaaccccgtctctactaaaaaatacaaaaaatta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     613157 76 +   2037526 tcacgaggtcaggagatcgaaaccatcctggctaacacggtgaaaccccgtctctactaaaaaatacaaaaaatta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75288879 76 + 122973662 tcacaaggtcaggagatcgaaaccatcctggctaacatggtgaaaccccgtctctactaaaaaatacaaaaaatta
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1     780470 67 +   1495729 tcacgaggtgaggagatcgaaacc---------aacacggtgaaaccctgtctctactaaaaaatacacaaaatta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      13139 67 -    811324 tcacgaggtcaggagattgaaacc---------aacacggtgaaaccctgtctctactaaaaaatacaaaaaatta
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053828 67 -  71996105 tcacgaggtcaggagatcgaaacc---------aacacggtgaaaccctgtctctactaaaaaatacaaaaaatta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47849 67 +    779361 tcacgaggtcaggagatcgaaacc---------aacatggtgaaaccctgtctccactgaaaaatacaaaaaatta
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705543 67 -   1829203 tcacgaggtcaggagatcgaaacc---------aacacggtgaaaccctgtctgtactgaaaaatacaaaaagtta
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e saiBol1.JH378327            36375  0 -    750284 C
e otoGar3.GL873550           634686 4380 +  18854210 I
e aotNan1.NW_018496901v1     402592 86 -    486031 I
e cebCap1.NW_016107755v1    1205858 86 -   1771730 I
e calJac3.chr4             30769946 79 + 171630274 I
e macFas5.chr4             30485407 10828 - 170955103 I
e rheMac8.chr4             31201115 5984 + 172585720 I

a score=632538.000000
s hg38.chr6_GL000254v2_alt  1837203 167 +   4827813 gc----------------------tgggcgcagaggcacgggcctgtagtcccagctactcaggaggcggaggcaggagaatggcgtcaacccgggaggcggaggttgcagtgagccaggattgtgcgactgcactccagcctgggtgacagggtgaaacgc-catctcaaaaaataaaaattgaaaaat
s panTro5.chr6             30683961 167 + 175400573 gc----------------------tgggcgcagaggcaggggcctgtagtcccagctactcaggaggcggaggcaggagaatggcgtcaacccgggaggcggaggttgcagtgagccaggattgtgcgactgcactccagcctgggtgacaaggcgaaactc-catctcaaaaaataaaagttaaaaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31107931 167 + 173848474 gc----------------------tgggcgcagaggcaggggcctgtagtcccagctactcaggaggcggaggcaggagaatggcgtcaacccgggaggcggaggttgcagtgagccaggattgtgcgactgcactccagcctgggtgacaaggcgaaactc-catctcaaaaaataaaagttaaaaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     613233 189 +   2037526 gctgggcgcagaggcaggggcctgtgggcgcagaggcaggggcctgtagtcccagctactcaggaggcggaggcaggagaatggcgtcaacccgggaggcggaggttgcagtgagccaggattgtgcgactgcactccagcctgggtgacagggcgaaactc-catctcaaaaaataaaaattaaaaaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75288955 167 + 122973662 gc----------------------tgggcgcggaggcgggcgcttgtagtcccagctactcaggaggcagaggcaggagaatggcgtcaacccgggaggcggaggttgcagtgagccaggattgtgcgactgcactccagcctgggtgacagggcaagactc-catctcaaaaaataaaaattaaaaaat
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30496235 166 - 170955103 gc----------------------cgggcatggtggcaggcacctgtagtcccagctactcaggaggctgaggcaggagaatgacatcatcccaggaggcagaggttgctgtgcaccgagattgtgccactgcactccggcctgagtgacagggtgagactc-tgtctcaaaaaataaaaatt-caaaaa
i macFas5.chr4             I 10828 C 0
s macNem1.NW_012012100v1     780537 152 +   1495729 gc----------------------cgggcatggt-gcaggcacctgtagtcccagctactcaggaggctgaggcaagagaatggtgtcatcccaggaggcagaggttgctttgcaccgagattgtgccactgcactccagcctgagtgacagggtgagactc-tgtctcaaaaaat--------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      13206 164 -    811324 gc----------------------cgggcatggt-tcaggcacctgtagtcccagctactcaggaggctgaggcaggagaatggcgtcatcccaggaggcagaggttgctgtgcgccgagattgtgccactgcactccggcctgagtgacagggtgaga--c-tgtctcaaagaataaaaattaaaaaaa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30053895 164 -  71996105 gc----------------------caggcatggt-gcaggcacctgtagtcccagctactcaggaggctgaggcaggagaatggcgtcatcccaggaggcagaggttgctgtgcgccgagattgtgccactgcactccggcctgagtgacagggtgagactcttgtcttaaaaaataaaaatt---aaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      47916 165 +    779361 gc----------------------cgggcatggtggcaggcacctgtagtcccagctactcaggaggctgaggcaggagaatgacgtcatcccaggaggcagaggttgctgtgcactgagattgtgccactgcattctggcctgagtgacagggtgagactc-tgtctcaaaaaataaaaatt--caaag
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705610 144 -   1829203 gc----------------------cgggcatagt----------------cctagctactcaggaggctgaggcaggagaatgacgtcatcccaggaggcagaggttgctgtgtgccgagattgtgccactgcactccagcctgagtgacagggtgagtctc-tgtctcaaaaaataaaaatt-------
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e saiBol1.JH378327            36375   0 -    750284 C
e otoGar3.GL873550           634686 4380 +  18854210 I
e aotNan1.NW_018496901v1     402592  86 -    486031 I
e cebCap1.NW_016107755v1    1205858  86 -   1771730 I
e calJac3.chr4             30769946  79 + 171630274 I
e rheMac8.chr4             31201115 5984 + 172585720 I

a score=37004.000000
s hg38.chr6_GL000254v2_alt  1837370 7 +   4827813 aaaaaaa
s panTro5.chr6             30684128 7 + 175400573 aaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31108098 7 + 173848474 aaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     613422 7 +   2037526 agaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75289122 7 + 122973662 aaaaaaa
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30496401 7 - 170955103 aaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     780689 7 +   1495729 aaaaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      13370 7 -    811324 aaaaaaa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30054059 7 -  71996105 aaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      48081 7 +    779361 aaaaaaa
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705754 7 -   1829203 aaaaaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30770025 7 + 171630274 AAAATAG
i calJac3.chr4             I 79 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e saiBol1.JH378327            36375 0 -    750284 C
e otoGar3.GL873550           634686 4380 +  18854210 I
e aotNan1.NW_018496901v1     402592 86 -    486031 I
e cebCap1.NW_016107755v1    1205858 86 -   1771730 I
e rheMac8.chr4             31201115 5984 + 172585720 I

a score=572944.000000
s hg38.chr6_GL000254v2_alt  1837377 81 +   4827813 gaaCCTGGATCTCAATTTAATTTTTCATATTCTTGCAATGAAATGGACTTGAGGAAGCTAAGATCATAGCTAGAAATACAG
s panTro5.chr6             30684135 81 + 175400573 gaaCCTGGATCTCAATTTAATTTTTCATATTCTTGCAATGAAATGGAATTGAGGAAGCTAAGATCATAGCTAGAAATACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31108105 81 + 173848474 gaaCCTGGATCTCAATTTAATTTTTCATATTCTTGCAATGAAATGGAATTGAGGAAGCTAAGATCATAGCTAGAAATACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     613429 80 +   2037526 gaaCCTGGATCTCAATTTAATTTTTCATATTCTTGCAATGAAATGGAATTGAGGAAGCTAAGATCGTAGCTA-AAATACAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75289129 81 + 122973662 gaaCCTGGATCTCAATTTAATTTTTCATATTCTTGCAATGAAACGGAATTGAGGAAGCTAAGGCCATAGCTAGAAATACAG
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30496408 80 - 170955103 gaaCCTGGATCTCAATTTATTTTTTCATATTC-TGCAGTGAAATGGAGTTGAGGAAGCTAAAGTCATAGTTAGAAATACAG
i macFas5.chr4             C 0 I 4
s macNem1.NW_012012100v1     780696 80 +   1495729 gaaCCTGGATCTCAATTTATTTTTTCATATTC-TGCAGTGAAATGGAGTTGAGGAAGCTAAGGTCATACTTAGAAATACAG
i macNem1.NW_012012100v1   C 0 I 4
s cerAty1.NW_012002513v1      13377 80 -    811324 gaaCCTGGATCTCAATTTATTTTTTCATATTC-TGCAGTGAAATGGAGTTGAGGAAGCTAAGGTCATAGTTAGAAATACAG
i cerAty1.NW_012002513v1   C 0 I 4
s chlSab2.chr17            30054066 80 -  71996105 gaaCCTGGATCTCAATTTATTTTTTCATATTC-TGCAGTGAAATGGAGTTGAGGAAGCTAAAGTCATAGTTAGAAATACAG
i chlSab2.chr17            C 0 I 318
s manLeu1.NW_012106264v1      48088 80 +    779361 gaaCCTGGATCTCAATTTATTTTTTCATATTC-TGCAGTGAAATGGTGTTGAGGAAGCTAAAGTCATAGTTAGAAATACAG
i manLeu1.NW_012106264v1   C 0 I 4
s colAng1.NW_012115577v1     705761 80 -   1829203 gaaCCTGGATCTCAATTTATTTTTTCATATTC-TGCAATGAAATGGAGTTGAGGAAGCTAAGGTCATAGTTAGAAATACAG
i colAng1.NW_012115577v1   C 0 I 4
s calJac3.chr4             30770032 81 + 171630274 GAACCTGGGTCTCAATTTATTTTTTCATACTTGTGTGATGAAATGGAGTTGAGGAAGCTACAGTTATAGCTGGAAATACAG
i calJac3.chr4             C 0 I 4
s cebCap1.NW_016107755v1    1205944 81 -   1771730 GAACCTGGGTCTCAATTTATTTTTTCATGTTCATGTGATGAAATTGAGTTGAGGAAGCTAAGGTCATAGCTGGAAATACAG
i cebCap1.NW_016107755v1   I 86 I 4
s aotNan1.NW_018496901v1     402678 81 -    486031 GAACCTGGGTCTCAATTTATTTTTTCATATTCGTGTGATGAAATGGAGTTGAGGAAGCTACAGTCATAGCTGGAAATACCG
i aotNan1.NW_018496901v1   I 86 I 4
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e saiBol1.JH378327            36375  0 -    750284 C
e otoGar3.GL873550           634686 4380 +  18854210 I
e rheMac8.chr4             31201115 5984 + 172585720 I

a score=520097.000000
s hg38.chr6_GL000254v2_alt  1837458 83 +   4827813 ATAATTCCACAGCACATCTCTAGCAAATTTAGCCTATTCCTATTCTCTAGCCTATTCCTTACCACCTGTAATCTTGACCATAT
s panTro5.chr6             30684216 83 + 175400573 ATAATTCCACAGCACATCTCTAGCAAATTTAGCCTATTCCTATTCTCTAGCCTATTCCTTACCACCTGTAATCTTGACCATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31108186 83 + 173848474 ATAATTCCACAGCACATCTCTAGCAAATTTAGCCTATTCCTATTCTCTAGCCTATTCCTTACCACCTGTAATCTTGACCATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     613509 83 +   2037526 ATAATTCCACAGCACATCTCTAGCAAATTTAGCCTATTCCTATTCTCTAGCCTATTCCTTACCACCTGTAATCTTGACCATAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75289210 83 + 122973662 ATAATTCCACAGCACATCTCTAGCAAATTCAGCCTATTCCTATTCTCTAGCCTATTCCTTACCACCTGTAATCTTGACCATAT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30496492 65 - 170955103 ATAATTCCACAGCACATCTCCGGCAAATT------------------TAGCCTATTCCTTACCACCTGTAATCTTGACCATAT
i macFas5.chr4             I 4 C 0
s macNem1.NW_012012100v1     780780 65 +   1495729 ATAATTCCACAGCACATCTCTGGCAAATT------------------TAGCCTATTCCTTACCACCTGTAATCTTGACCATAT
i macNem1.NW_012012100v1   I 4 C 0
s cerAty1.NW_012002513v1      13461 65 -    811324 ATAATTCCACAGCACATCTCTGGCAAATT------------------TAGCCTATTCCTTACCACCTGTAATCTTGACCATAT
i cerAty1.NW_012002513v1   I 4 C 0
s chlSab2.chr17            30054464 65 -  71996105 ATAATTCCACAGCACATCTCCGGCAAATT------------------TAGCCTATTCCTTACCACCTGTAATCTTGACCATAT
i chlSab2.chr17            I 318 C 0
s manLeu1.NW_012106264v1      48172 65 +    779361 ATAATTCCACAGCACATCTCCGGCAAATT------------------GAGCCTATTGCTTACCACCTGTAATCTTGACCATAT
i manLeu1.NW_012106264v1   I 4 C 0
s colAng1.NW_012115577v1     705845 65 -   1829203 ATAATTCCACAGCACATCTCTGGCAAATT------------------TAGCCTATTCCTTACCACCTGTAATCTTGACCATAT
i colAng1.NW_012115577v1   I 4 C 0
s calJac3.chr4             30770117 82 + 171630274 ATAATTCCACAGCACATCTCTAGCAAATTTAGCTTATTTC-ATTTTCTAGCCTATTCTTTACCACCTGTAGTCTTGACCATAT
i calJac3.chr4             I 4 C 0
s cebCap1.NW_016107755v1    1206029 82 -   1771730 ATAATTCCACAGCACATCTCTAGCAATTTTAGCCTATTTC-ATTTTCTAGCCTATTCCTTACCACCTGTAGTCTTGACCATAT
i cebCap1.NW_016107755v1   I 4 C 0
s aotNan1.NW_018496901v1     402763 83 -    486031 ATAATTCCACAGCACATCTCTAGCAAATTTAGCCTATTTCTATTTTCTAGCCTATTCCTTACCACCTGTAGTCTTGACCATAT
i aotNan1.NW_018496901v1   I 4 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e saiBol1.JH378327            36375  0 -    750284 C
e otoGar3.GL873550           634686 4380 +  18854210 I
e rheMac8.chr4             31201115 5984 + 172585720 I

a score=2016147.000000
s hg38.chr6_GL000254v2_alt  1837541 232 +   4827813 ACCTTGGAGTTGAATATTGTTTTC----------------------------ATACtgctgtggtttgaatgttccctccaacactcatgttgagacttaatccctaatgtggcaatactgaaaggtggggcctttgagatgtgattggatcgtaaggctgtgccttcattcatgggttaatggattaatgggttatcacaggaatgggactggtggctttataagaagaggaaaagagaactgagctagcatgcccagc
s panTro5.chr6             30684299 232 + 175400573 ACCTTGGAGTTGAATATTGTTTTC----------------------------ATACtgctgtggtttgaatgttccctccaacactcatgttgagacttaatccctaatgtggcaatactgaaaggtggggccgttgagatgtaattggatcgtaaggctgtgccttcattcatgggttaatggattaatgggttatcacaggaatgggactggtggctttataagaagaggaaaagagaactgagctagcatgcccagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31108269 232 + 173848474 ACCTTGGAGTTGAATATTGTTTTC----------------------------ATACtgctgtggtttgaatgttccctccaacactcatgttgagacttaatccctaatgtggcaatactgaaaggtggggcctttgagatgtaattggatcgtaaggctgtgccttcattcatgggttaatggattaatgggttatcacaggaatgggactggtggctttataagaagaggaaaagagaactgagctagcatgcccagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     613592 231 +   2037526 ACCTTGGAGTTGAATATTGTTTTC----------------------------ATACtgctgtggtttgaatgttccctccaacactcatgttgagacttaatccctaatgtggc-atactgaaaggtggggcctttgagatgtaattggatcgtaaggctgtgccttcattcatgggttaatggattaatgggttatcacaggaatgggactggtggctttataagaagaggaaaagagaactgagctagcatgcccagc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75289293 232 + 122973662 ACCTTGGAGTTGAATATTGTTTTC----------------------------ATACtgctgtggtttgaatgttccctctaacactcatgttgagacttaatccctaatgtggcaatactgaaaggtggggcctttgagatgtgattggatcataaggctgtgccttcattcatgggttaatggattaatgggttatcacaggaatgggactggtggctttataagaagaggaaaagagaactgagctagcatgcccagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31207099 231 + 172585720 ACCTTGGAGTTGAATATTGTTTTC-----------------------------TACtgctttggtttgaatgttccttccaacactcatgttgagacttaatccctaatgtggcaatactgaaaggtggagcctttgagatgtcattggatgataaggctctaccttcattcatgggttaatggattaatgggttatcacaggaatgggactggtggctttataagaagaggaaaagagaactgagctagcatgcccagc
i rheMac8.chr4             I 5984 C 0
s macFas5.chr4             30496557 232 - 170955103 ACCTTGGAGTTGAATATTGTTTTC----------------------------ATACtgctttggtttgaatgttccttccaacactcatgttgagacttaatccctaatgtggcaatactgaaaggtggagcctttgagatgtcattggatgataaggctctaccttcattcatgggttaatggattaatgggttatcacaggaatgggactggtggctttataagaagaggaaaagagaactgagctagcatgcccagc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     780845 232 +   1495729 ACCTTGGAGTTGAATATTGTTTTC----------------------------ATACtgctttggtttgaatgttccttccaacactcatgttgagacttaatccctaatgtggcaatactgaaaggtggagcctttgagatgtcattggatgataaggctctaccttcattcatgggttaatggattaatgggttatcacaggaatgggactggtggctttataagaagaggaaaagagaactgagctagcatgcccagc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      13526 232 -    811324 ACCTTGGAGTTGAATATTGTTTTC----------------------------ATACtgctttggtttgaatgttccttccaacactcatgttgagacttaatccctaatgtggcaatactgaaaggtggagcctttgagatgtcattggatgataaggctctaccttcattcatgggttaatggattaatggattatcacaggaatgggactggtggctttataagaagaggaaaagagaactgagctagcatgcccagc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30054529 260 -  71996105 ACCTTGGAGTTGAATATTGTTTTCATATACCTTGGAGTTGAATATTGTTTTTATACtgctttggtttgaatgttccttccaacactcatgttgagacttaatccctgatgtggcaatactgaaaggtggagcctttgagatgtcattggatgataaggctctaccttcattcatgggttaatggattaatgggttatcacaggaatgggactggtggctttataagaagaggaaaagagaactgagctagcatgcccagc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      48237 232 +    779361 ACCTTGGAGTTGAATATTGTTTTC----------------------------ATACtgctttggtttgaatgttccttccaacactcatgttgagacttaatccctaatgtggcaatactgaaaggtggagcctttgagatgtcattggatgataaggctctaccttcattcatgggttaatggattaatgggttatcacaggaatgggactggtggctttataagaagaggaaaagagaaccgagctagcatgcccagc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     705910 232 -   1829203 ACCTTGGAGTTGAATATTGTTTTC----------------------------ATACtgctgtgttttgaatgttccctccaacactcatgttgagacttaatccctaatgtggcaatactgaaaggtggagcctttgagatgtgattggatgataaggctctaccttcattcaagggttaatggattaatgggttatcacaggaatgggactgatggctttataagaagaggaaaagagaactgagctagcatgcccagc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30770199 222 + 171630274 CCCTTGGAG-------TTGTTTTT----------------------------ATACtgcttttgtttgagtgttccctccaatactcatgttgagacttaatccctaatgtggcaatactaaaaggtggagcttttaagacatgattggatcataaggctctgtattcatttgcagattaatggactaatgggttatcacaggaatgggacaggaggctttataagg---agaagagagaactgagctagcataccaagc
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1206111 232 -   1771730 CCCTTGGGGTTGAATATTGTTTTT----------------------------ATATtacttttgtttgaatgttctctccaatactcatgttaagacttaatctctaatgtggcaatactaaaaggtggagcttttaagacatgattggatcataaggctctgtcttcattcacagattaatggattaatgggttatcacaggaatgggacaggtggctttataaggagaagaagagagaacagagctagcataccaagc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     402846 229 -    486031 CCCTTGGAGTTGAATATTGTTTTT----------------------------ATACtgcttttgtttgaatgttccctccaatactcatgttgagacttaatccctaatgtggcaatactaaaaggtggagcttttaagacatgattggatcataaggctctgtcttcattcacagattaatggactaaggggttatcacaggaatgggacaggtggctttataagg---agaagagagaactgagctagcataccaagc
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e saiBol1.JH378327            36375   0 -    750284 C
e otoGar3.GL873550           634686 4380 +  18854210 I

a score=24000.000000
s hg38.chr6_GL000254v2_alt  1837773 2 +   4827813 cc
s panTro5.chr6             30684531 2 + 175400573 cc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31108501 2 + 173848474 cc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     613823 2 +   2037526 cc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75289525 2 + 122973662 cc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31207330 2 + 172585720 cc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30496789 2 - 170955103 cc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     781077 2 +   1495729 cc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      13758 2 -    811324 cc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30054789 2 -  71996105 cc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      48469 2 +    779361 cc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     706142 2 -   1829203 cc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30770421 2 + 171630274 cc
i calJac3.chr4             C 0 I 1483
s cebCap1.NW_016107755v1    1206343 2 -   1771730 cc
i cebCap1.NW_016107755v1   C 0 I 1209
s aotNan1.NW_018496901v1     403075 2 -    486031 cc
i aotNan1.NW_018496901v1   C 0 I 1194
s otoGar3.GL873550           639066 2 +  18854210 cc
i otoGar3.GL873550         I 4380 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e saiBol1.JH378327            36375 0 -    750284 C

a score=67259.000000
s hg38.chr6_GL000254v2_alt  1837775 7 +   4827813 acagaga
s panTro5.chr6             30684533 7 + 175400573 acataga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31108503 7 + 173848474 acataga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     613825 7 +   2037526 acagaga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75289527 7 + 122973662 acagaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31207332 7 + 172585720 acagaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30496791 7 - 170955103 acagaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     781079 7 +   1495729 acagaga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      13760 7 -    811324 acagaga
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30054791 7 -  71996105 tcagaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      48471 7 +    779361 acagaga
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     706144 7 -   1829203 acagaga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30771906 7 + 171630274 acagaga
i calJac3.chr4             I 1483 I 98701
s cebCap1.NW_016107755v1    1207554 7 -   1771730 acagaga
i cebCap1.NW_016107755v1   I 1209 C 0
s aotNan1.NW_018496901v1     404271 7 -    486031 acagaga
i aotNan1.NW_018496901v1   I 1194 C 0
s otoGar3.GL873550           639068 7 +  18854210 acagtga
i otoGar3.GL873550         C 0 I 1
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e saiBol1.JH378327            36375 0 -    750284 C

a score=87548.000000
s hg38.chr6_GL000254v2_alt  1837782 10 +   4827813 gcctccacta
s panTro5.chr6             30684540 10 + 175400573 gcctccacta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31108510 10 + 173848474 gcctccacta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     613832 10 +   2037526 gcctccacta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75289534 10 + 122973662 gcctccacta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31207339 10 + 172585720 ccctccactt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30496798 10 - 170955103 gcctccacta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     781086 10 +   1495729 gcctccattt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      13767 10 -    811324 ccctccacta
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30054798 10 -  71996105 gcctccacta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      48478 10 +    779361 gcctccacta
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     706151 10 -   1829203 gcctccacta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30870614 10 + 171630274 GCTTCCACAT
i calJac3.chr4             I 98701 C 0
s saiBol1.JH378327            36375 10 -    750284 Gcttccacat
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1207561 10 -   1771730 acctccatta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     404278 10 -    486031 gcctccacta
i aotNan1.NW_018496901v1   C 0 I 71768
s otoGar3.GL873550           639076 10 +  18854210 gaccttacta
i otoGar3.GL873550         I 1 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I

a score=2909260.000000
s hg38.chr6_GL000254v2_alt  1837792 303 +   4827813 gagtgatgctaagtggaaat-gtgaggtgcagctgccacagagggcccccaccagggaaatgtctagtgt--ctagtggatccaggccacaggagagagtgccttgtggagcgctgggagcaggacctgaccacc-----------------accaggaccccagaactgtggagtcagtggcagcatgcagcgcc-cccttgggaaagctttaggcaccagcctgcaacccattcgagcagccacgtaggctgcacccagcaaagccacaggcacggggctacctgaggcctt-gggggcccaatccctgctccagtgtgtccg
s panTro5.chr6             30684550 303 + 175400573 gagtgatgccaagtggaaat-gtgaggtgcagctgccacagagggcccccaccagggaaatctctagtgt--ctagtggatccaggccacaggagagagtgccttgtggagcgctgggagcaggacctgaccacc-----------------atcaggaccccagaactgtggagtcagtggcagcatgcagcgcc-cccttgggaaagctttaggcaccagcctgcaacccattcgagcagccacgtaggctgcacccagcaaagccgcaggcacggggctacctgaggcctt-gggggcccaatccctgctccagtgtgtctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31108520 303 + 173848474 gagtgatgccaagtggaaat-gtgaggtgcagctgccacagagggcccccaccagggaaatctctagtgt--ctagtggatccaggccacaggagagagtgccttgtggagcgctgggagcaggacctgaccacc-----------------atcaggaccccagaactgtggagtcagtggcagcatgcagcgcc-cccttgggaaagctttaggcaccagcctgcaacccattcgagcagccacataggctgcacccagcaaagccgcaggcacggggctacctgaggcctt-gggggcccaatccctgctccagtgtgtctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     613842 302 +   2037526 gagcgatgccaagtggaaat-gtgaggtgcagctgccacagagggcccccaccaaggaaatctctagtgt--ctagtggatccaggccacgggagagagtgccttgtggagcgctgggagcaggacctgaccacc-----------------atcagga-cccagaactgtggagtcagtggcagcatgcagcgcc-cccttgggaaagctttaggcaccagcctgcaacccattcgagcagccacgtaggctgcacccagcaaagccgcaggcacagggctacctgaggcctt-gggggcccaatcccttctgcagtgtgtctg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75289544 303 + 122973662 gagtgatgccaagtggaaat-gtgaggtgcagctgccacagagggcccccaccagggaaatgtctagtat--ctagtggatccaggccacaggagagagtgccttgtggagtggtgggagcaggacctgaccacc-----------------accaggacctcagaactgtggagtcagtggcagcatgcaacgcc-ctcttgggaaagcttcaggcaccagcctgcaaccaattcgagcagccacgtaggctgcacccagcaaagccataggcacggggctacctgaggcctt-gggggccgaatccctactccagtgtgtccg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31207349 301 + 172585720 gagtaatgccaagtggaaat-gtgaggtgcagctgccacagagagcccccaccagggaaatgtctagtgt--ctagtggatccaggccgcag--gagagtgcattgtggagcggtgggagcaggacctgaccacc-----------------accaggacaccagaactgtggagtcagtggcagcatgcaacgcc-cccttcggaaagcttcaggcaccagcctataacccattcgagcagccatgtaggctgcacctagcaaagccataggcacagggctacctgaggtctt-gggggcccaatccctgctccagtgtgtctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30496808 301 - 170955103 gagtaatgccaagtggaaat-gtgaggtgcagctgccacagagagccaccaccagggaaatgtctagtgt--ctagtggatccaggccgcag--gagagtgcattgtggagcggtgggagcaggacctgaccacc-----------------accaggacaccagaactgtggagtcagtggcagcatgcaacgcc-cccttcggaaagcttcaggcaccagcctataacccattcgagcagccatgtaggctgcacccagcaaagccataggcacagggctacctgaggtctt-gggggcccaatccctgctccagtgtgtctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     781096 301 +   1495729 gagtaatgccaagtggaaat-gtgaggtgcagctgccacagagagcccccaccagggaaatgtctagtgt--ctagtggatccaggccgcag--gagagtgcgttgtggagcggtgggagcaggacctgaccacc-----------------accaggaccctagaactgtggagtcagtggcagcatgcaacgcc-cccttgggaaagcttcaggcaccagcctataacccattcgagcagccatgtaggctgcacctagcaaagccataggcagagggctacctgaggtctt-gggggcccaatccctgctccagtgtgtctg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      13777 302 -    811324 gagtaatgccaagtggaaat-gtgaggtgcagctgccacagagagcccccaccagggaaatgtctagtgt--ctagtggatccaggccacag--gagagtgcattgtggagcggtgggagcaggacctgaccacc-----------------accaggaccccagaactgtggagtcagtggcagcatgcaacgcc-cccttcggaaagcttcaggcaccagcctgtaacccattcgagcagccatgtaggcagcacccagcaaagccataggcacaaggctacctgaggtcttggggggcccaatccctgctccagtgtgtctg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30054808 301 -  71996105 gagtaatgccaagtggaaat-gtgaggtgcagctgccacagagagcccccaccagggaaatgtctagtgt--ctagtggatccaggccacag--gagagtgcattgtggagcggtgggagcaggacctgaccacc-----------------accaggaccccagaactgtggagtcagtggcagcatgcaacgcc-cccttgggaaagcttcaggcaccagcctataacccattcgagcagccatgtaggctgcacccagcgaagccataggcacagggctacctgaggtctt-gggggcccaatccctgctccagtgtgtctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      48488 302 +    779361 gagtaatgccaagtggaaatggtgaggtgcagctgccgcagagagcccccaccagggaaatgtctagtgt--ctagtggatccaggccacag--gagagtgcgttgtggagcggtgggagcaggacctgaccacc-----------------accaggaccccagaactgtggagtcagtggcagcatgcaacgcc-cccttgggaaagcttcaggcaccagcctataacccattcgagcagccatgtaggctgcacccagcaaagccataggcacagggctacctgaggtctt-gggggcccaatccctgctccagtgtgtctg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     706161 303 -   1829203 gagtaatgccaagtggaaat-gtgaggtgtagctgccacagagagcccccaccagggaaatgtctagtgt--ctagtggatccaggccgcaggagagagtgtcttgtggagcggtaggagcaggacctgaccacc-----------------accaggacctcagaactgtggagtcagtggcagcatgcaacgca-cccttgggaaagcttcaggcactagcctatgacccattggagcagccatgtaggctgcacccagcaaagccataggcagagggctacctgaggtctt-gggggcccaatccctgctccagtgtgtctg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30870624 286 + 171630274 GATTGAtaccaagtggaaat-gtgaggtgcagctgccacagagagcccccaccagggaaatgtctagtgtagccatggaagccagtccactg--gagagtgccttgtggagtggtggg----------------------------------agcaggaccccagaactgtggagtcagtagcaacatgcagtgcc-cacttgggaaagcttcaggctccagcctccaacccacatgagcagccacatgggctgcccccagctaagccacaggcgcagggctacctgaggcctt-gggggcccaatccctgctccagtgtgtcca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            36385 288 -    750284 gagtgatgccaagtggaaat-gtgaggtgcagctgccacagagagcccccaccagggaaatgtctagtgtatccgtggaagccaggccactggagagagtgccttgtggagtagtggg----------------------------------agcaggaccccagaactacggagtcagtagcaacatgcagtgcc-cacttaggaaagcttcaggctccggcctccaacccacacgagcagccacatgggctgcccccagcaaagccacaggcctggggctacctgaggcttt-gggggccaaatccctgctccagtgtatcca
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1207571 319 -   1771730 gagtgatgccaagtagaaat-gtgaggtggagctgccacagagagcctctaccagggaattgtctagtggcgtcatggaagccaggtcaccagagagagtgccttgtagagtggtgagagcaggacctgatctccaccacgacccaaccaccagcaggaccccagaact--ggagtcattagcagtgtgcaatgcc-cacttcagaaagcttcaggcatcagcctccaacccatactagcagtcacatgggctgcaccaagctaagccacagacacagggctacctgaggcctt--gggacccaacacctgctccagtgtgtcta
i cebCap1.NW_016107755v1   C 0 I 63
s aotNan1.NW_018496901v1     476056 286 -    486031 gagtgatgccaagtggaaat-gtgaggtgcagctgccacagagagcccccaccagggaaatgtctagtgtagccatggaagccaggccactggagagagtgccttgtggagtggtggg----------------------------------agcaggaccacagaactgtggagtcagtagcaacatgcaatgcc-cacttgggaaagcttcagcctctagcctccaacccacacgagcagccacatgggctgcccccagcaaagccacagacccagggctacctgaggcctt-gggggcccaatccctgctccagtg--tcca
i aotNan1.NW_018496901v1   I 71768 C 0
s otoGar3.GL873550           639086 254 +  18854210 gagcaatgccaagcagaaat-gtag------------acagggagtctgctgcagag--------agtgc--acactgg---------------ggcaatgcctcgtaaaactgtgggaccagcattg----ccc-----------------cctggcaccctagaactgtggaatcatgggcaacacacagcaccacacctagaaaagcttcaggcaccagactccatcccatacaagcagccacctggactgtgaccag-------atggg----ggacagcctgaggcctt-cagggcctaagctctgccccagtctgtcca
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I

a score=283720.000000
s hg38.chr6_GL000254v2_alt  1838095 35 +   4827813 tgaggcagcacacgaagtcaaaagagattattct---C
s panTro5.chr6             30684853 35 + 175400573 tgaggcagcacatgaagtcaaaagagattattct---C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31108823 35 + 173848474 tgaggcagcacatgaagtcaaaagagattattct---c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     614144 35 +   2037526 tgaggcagcacatgaagtcaaaagagattattct---C
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75289847 35 + 122973662 tgaggcagcacatggagtcaaaagagattattct---c
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31207650 35 + 172585720 tgaggcagcacatggagtcaaaagagattattct---c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30497109 35 - 170955103 tgaggcagcacatggagtcaaaagagattattct---c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     781397 35 +   1495729 tgaggcagcacatggagtcaaaagagattattct---C
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      14079 35 -    811324 tgaggcagcacatggagtcaaaagagattattct---C
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30055109 35 -  71996105 tgaggcagcacatggagtcaaaagagattattct---T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      48790 35 +    779361 tgaggcagcacatggagtcaaaagagattattct---c
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     706464 35 -   1829203 tgaggcagcatatggagtcaaaagagattcttct---c
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30870910 34 + 171630274 tgaggcagca----gagtcacaggagattattctTCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            36673 30 -    750284 tgaggcagca----gagccacaggagattattct----
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018496901v1     476342 34 -    486031 tgaggcagca----gagtcacaggagattattctCCTC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           639340 34 +  18854210 agagatggt-catggagtccaaagaatctattct---c
i otoGar3.GL873550         C 0 I 287
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e cebCap1.NW_016107755v1    1207890 63 -   1771730 I

a score=237948.000000
s hg38.chr6_GL000254v2_alt  1838130 27 +   4827813 TTCCCACAGATAC-CTTTTCTCTCCCAT----
s panTro5.chr6             30684888 27 + 175400573 TTCCCACAGATAC-CTTTTCTCTCCCAT----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31108858 27 + 173848474 TTCCCACAGATAC-CTTTTCTCTCCCAT----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     614179 27 +   2037526 TTCCCACAGATAC-CTTTTCTCTCCCAT----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75289882 27 + 122973662 TTCCCACAGATAC-CTTTTCTCTCCCAT----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31207685 27 + 172585720 TTCCCACAGATAC-CTTTTCTCTCCTAT----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30497144 27 - 170955103 TTCCCACAGATAC-CTTTTCTCTCCTAT----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     781432 27 +   1495729 TTCCCACAGATAC-CTTTTCTCTCCTAT----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      14114 27 -    811324 TTCCCACAGATAC-CTTTTCTCTCCTAT----
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30055144 27 -  71996105 TTCCCACAGATAC-CTTTTCTCTCCTAT----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      48825 27 +    779361 TTCCCACAGATAC-CTTTTCTCTCCCAT----
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     706499 27 -   1829203 TTCCCACAGATAC-CTTTTCTCTCCCAT----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30870944 28 + 171630274 TTCCCGCAGATAATCTTTTCTCTCCCAT----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            36703 22 -    750284 ----CACAGATA--CTTTTCTCTCCCAT----
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018496901v1     476376 27 -    486031 TTCCCGCAGATAG-CTTTTCTCTCCCAT----
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           639661 31 +  18854210 TCTCCACACATGC-CTTGCCTCACCTTAGAAC
i otoGar3.GL873550         I 287 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I
e cebCap1.NW_016107755v1    1207890 63 -   1771730 I

a score=470311.000000
s hg38.chr6_GL000254v2_alt  1838157 49 +   4827813 GACCCTTTAACAGCATCTGCTTCATTCCCCTCACCTTCCCAGGCTGATC
s panTro5.chr6             30684915 49 + 175400573 GACCCTTTAACAGCATCTGCTTCATTCCCCTCACCTTCCCAGGCTGATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31108885 49 + 173848474 GACCCTTTAACAGCATCTGCTTCATTCCCCTCACCTTCCCAGGCTGATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     614206 49 +   2037526 GACCCTTTAACAGCATCTGCTTCATTCTCCTCACCTTCCCAGGCTGATC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75289909 49 + 122973662 GGCCCTTTAACAGCATCTGCTTCATTCCCCTCACCTTCCCAAGCTGATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31207712 49 + 172585720 GGCCCTTTAACAGCATCTGCTTCATTCCCCTCACCTTCTCAAGCTGAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30497171 49 - 170955103 GGCCCTTTAACAGCATCTGCTTCATTCCCCTCACCTTCTCAAGCTGAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     781459 49 +   1495729 GGCCCTTTAACAGCATCTGCTTCATTCCCCTCACCTTCTCAAGCTGAGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      14141 49 -    811324 GGCCCTTTAACAGCATCTGCTTCATTCCCCTCACCTTCTCAAGCTGAGC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30055171 49 -  71996105 GGCCCGTTAACAGCATCTGCTTCATTCCCCTCACCTTCTCAAGCTGAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      48852 49 +    779361 GGCCCTTTAACAGCATCTGCTTCATTCCCCTCACCTTCTCAAGCTGAGC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     706526 49 -   1829203 GGCCCTTTAACAGCATCTGCTTCATTCCCCTCATTTTCCCAAGCTGAGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30870972 46 + 171630274 GGCACTTTACCAGCA---TCTTCATTTCCCTCACCCTCCCAAGATAAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            36725 46 -    750284 GGCCCTTTAACAGTA---CCTTCATTTCCCTCACCCTCCCAAGATAAGC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1207953 49 -   1771730 GACCCTTTAACAGAATCTTCTTCATTCTCCTCACACTCCCAAGATGAGC
i cebCap1.NW_016107755v1   I 63 C 0
s aotNan1.NW_018496901v1     476403 46 -    486031 GGCCTTTTAACAGCA---TCTTCATTTCCCTCACCCTCCCAAGATAAGC
i aotNan1.NW_018496901v1   C 0 T 71728
s otoGar3.GL873550           639692 48 +  18854210 AAACCTCCAACAGAATCATCTTCATTTCCTTCACC-TCCCAAGATGAGC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I

a score=502475.000000
s hg38.chr6_GL000254v2_alt  1838206 53 +   4827813 TGAGGTAAACTTTGAAGTAAAATAAAAGCTGTGTTTGAGCATCATTTGTATTT
s panTro5.chr6             30684964 53 + 175400573 TGAGGTAAACTTTGAAGTAAAATAAAAGCTGTGTTTGAGCATCATTTGTATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31108934 52 + 173848474 TGAGGTAAACTTTGAAGTAAAATAAAAGCTGTGTTTGAGCATCA-TTGTATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     614255 53 +   2037526 TGAGGTAAACTTTGAAGTAAAATAAAAGCTGTGTTTGAGCATCATTTGTATTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75289958 53 + 122973662 TCAGGTAAACTTTGAAGTAAAATAAAAGCTGTGTTTGAGCATCATTTGTATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31207761 53 + 172585720 TGAAGTAAACTTTGAAGTAAAATAAAAGCTGTGTTTGAGCATCATTTGTATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30497220 53 - 170955103 TGAAGTAAACTTTGAAGTAAAATAAAAGCTGTGTTTGAGCATCATTTGTATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     781508 53 +   1495729 TGAGGTAAACTTTGAAGTAAAATAAAAGCTGTGTTTGAACATCATTTGTATTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      14190 53 -    811324 TGAAGTAAACTTTGAAGTAAAATAAAAGCTGTGTTTGAGCATCATTTGTATTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30055220 51 -  71996105 TGAAGTAAACTTTGAAGTAAAATAAAAGCTGTGTTTGAGCATCATTTGTC--T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      48901 53 +    779361 TGAGGTAAACTTTGAAGTAAAATAAAAGCTGTGTTTGAACATAATTTGTATGT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     706575 53 -   1829203 TGAGGTAAACTTTGAAGTAAAATAAAAGCTGTGTTTGATCATCATTTGTATTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30871018 53 + 171630274 TGAAGCAAGCTTGGAAGTAAAATTAAATTTGTAATCAAGCATCATTTGTATTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            36771 53 -    750284 TGCAGCTCACTTGGAAATACAATTAAATTTGTAATCAAGCATCATTTGTATTT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1208002 53 -   1771730 TGAGGCAAACTTTGAAGTATAATTAAAGCTGTATTTGAACATCACTTGAATTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     404721 53 -    486031 TGAGGCAAACTTTGAAATATAATTGAAGCTGTATTTGAACATCACTTTTATTT
i aotNan1.NW_018496901v1   T 71728 I 71727
s otoGar3.GL873550           639740 53 +  18854210 TAAGGCAAACTCTGGGGTTAAAATGAAGGTGTGTTTGAGCATCACCTGCACTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I

a score=316890.000000
s hg38.chr6_GL000254v2_alt  1838259 44 +   4827813 CATTTGTGCGTTTTGTGCCTTGTT-----G--------TTTTAATTTTTTAACCACA
s panTro5.chr6             30685017 44 + 175400573 CATTTGTGCATTTTGTGCCTTGTT-----C--------TTTTAATTTTTTAACCACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31108986 44 + 173848474 GATTTGTGCATTTTGTGCCTTGTT-----C--------TTTTAATTTTTTAACCACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     614308 44 +   2037526 CATTTGTGCATTTTGTGCCTTGTT-----C--------TTTTAATTTTTTAACCACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75290011 44 + 122973662 CATTTGTGTGTTTTGTGCCTTGTT-----C--------TTTTAATTTTTTAACCACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31207814 41 + 172585720 CATTTGTGCATTTTGTGCCTT--------T--------TTTTTTTTTTTAAACCACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30497273 40 - 170955103 CATTTGTGCATTTTGTGCCT---------T--------TTTTTTTTTTTAAACCACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     781561 45 +   1495729 CATTTGTGCATTTTGTGCCTTTTTC----T--------TTTTTTTTTTTAAACCACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      14243 46 -    811324 CATTTGTGCATTTTGTGCCtttttc---tt--------tttttttttttAAACCACA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30055271 44 -  71996105 CATTTGTGCATTTTGTGCCtttt-----tt--------tttttttttttAAACCACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      48954 46 +    779361 CATTTGTGCATTTTGTGCCtttttc---tt--------tttttttttttAAACCACA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     706628 43 -   1829203 CA-TTGTGCATTTTGTGCCTTGTT-----C--------TTTTTATTTTTTAACCACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30871071 44 + 171630274 CATTTGTGCATTTTGTATCTTGTT-----C--------TTTTTATTTTTTAACCACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            36824 52 -    750284 CATTTGTGCATTTTGTACtttgtt-----cttattttgttcttattttTAGACCTCA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1208055 44 -   1771730 CATTTGTGCATTTTGCACCTTATT-----C--------TTTTTGGTGTTTAACCACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     476501 41 -    486031 CATTTGTGCATCTTGTGCCTTGTT-----C-----------TTATTTTTTAACCACA
i aotNan1.NW_018496901v1   I 71727 C 0
s otoGar3.GL873550           639793 41 +  18854210 CATTTGTGTGTTTTGCTCTTTATTATTTTG--------TTTTAAGTTTT--------
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     639510 3239 -   1411461 I

a score=1019137.000000
s hg38.chr6_GL000254v2_alt  1838303 90 +   4827813 TTCAAGCTATCCTTTGGCTTCCAATGCCATGGTCCACCCAGAACTGCATTCACTGGCCCATGTTCTAGTTCTGGTCATGCCGACTTTCCC
s panTro5.chr6             30685061 90 + 175400573 TTCAAGCTATCCTTTGGCTTCCAATGCCATGGTCCACCCAGAACTGCATTCACTGGCCCGTGTTCTAGTTCTGGTCATGCCAACTTTCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31109030 90 + 173848474 TTCAAGCTATCCTTTGGCTTCCAATGCCATGGTCCACCCAGAACTGCATTCACTGGCCCGTGTTCTAGTTCTGGTCATGCCAACTTTCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     614352 90 +   2037526 TTCAAGCTATCCTTTGGCTTCCAATGCCATGGTCCACCCAGAACTGCATTCGCTGGCCCATGTTCTAGTTCTGGTCATGCCGACTTTCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75290055 90 + 122973662 TTGAAGCTATCCTTGGGCTTCCAATGCCATGGTCCACCCAGAACTGCATTCACTGGCCCTTGTTCTAGTTCTGGTCATGCCAACTTTCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31207855 90 + 172585720 TTCAAGCTATCCTTGGGCTTCCAATGCCATGGTCCACCCAGAACTGCATTCACTGGCCAGTGTTCTAGTTCTGGTCATGCCGACTTTCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30497313 90 - 170955103 TTCAAGCTATCCTTGGGCTTCCAATGCCATGGTCCACCCAGAACTGCATTCACTGGCCAGTGTTCTAGTTCTGGTCATGCCGACTTTCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     781606 90 +   1495729 TTCAAGCTATCCTTGGGCTTCCAATGCCATGGTCCACCCAGAACTGCATTCACTGGCCAGTGTTCTAGTTCTGGTCATGCCGACTTTCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      14289 90 -    811324 TTCAAGCTATCCTTGGGCTTCCAATGCCATGGTCCACCCAGAACTGCATTCACTGGCCAGTGTTCTAGTTCTGGTCATGCCACCTTTCCC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30055315 90 -  71996105 TTCAAGCTATCCTTGGGCTTCCAATGCCATGGTCCACCCAGAACTGCATTCACTGGCCAGTGTTCTAGTTCTGGTCATGCCAACTTTCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      49000 90 +    779361 TTCAAGCTATTCTTGGGCTTCCAATGCCGTGGTCCACCCAGAACTGCATTCACTGGCCAGTGTTCTAGTTCTGGTCATGCCAACTTTCCC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     706671 90 -   1829203 TTCAAGCTATCCTTGGGCTTCCAATGCCATGGTCCACCCAGAACTGCATTCACTGGCCAGTGTTCTAGTTCTGGTCATGCCGACTTTCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30871115 75 + 171630274 TTCGAGCCATC----------CAATGCCATGGTCCGCCTACAACTGTGTTCCCTGGCC--TGTTCTAGTCCTGGTCATGCTGACTTT---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            36876 89 -    750284 TTCAAGCCATCCTTAGGCCT-CAATGCCATGGTCCGCCTACAACTGGGCCCCCTGGCCTGTGTTCTAGTCCTGGTCATGCTGACTTTCCC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1208099 90 -   1771730 TTCAAGACATCCTTGGGCTTCCATTGCCATGGACCACCCAGAACTGCATTCCCTGATCTCTGTCCTTGTTCTGGTTATGTCGACTTTTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     476542 90 -    486031 TTCGAGCCATCCTTAGGCTTCCAATGCCATGGTCAGCCTAGAACTGCGTTCTCTGGCCTGTGTTCTAGTCCTGGTCATGCTGACTTTCCC
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     642749 90 -   1411461 TTCAAACCATCCTTGGGCTTCCAGTGCCACGGTCAACCCAGAGCTGCATTCACTGGGCAGTGTTCTAGTTCTGGTCATGGCGACTTTCCC
i proCoq1.NW_012149775v1   I 3239 I 596
s otoGar3.GL873550           639834 90 +  18854210 CTCAAACCCTCCTTGGGCTTCCAGTGACATAATCAAGCCAGCCCTGAATTCCTTGGGCTACATTCTAGTTCTGGTCATGGCAACTTTCCC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I

a score=955955.000000
s hg38.chr6_GL000254v2_alt  1838393 101 +   4827813 GTTTT-CCTGGTGAATCCCTGTAATCACCTGAGTCTCATTCTGTCAGGTGATATC--CAGTAAGAAggcaacatgtgcggtgagaaagcccagggagtcctggg
s panTro5.chr6             30685151 101 + 175400573 GTTTT-CCTGGTGAATCCCTGTAATCACCTGAGTCTTATTCTGTCAGGTGATATC--cagtgagaaggcaacatgtgcggtgagaaagcccagggagtcctggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31109120 101 + 173848474 GTTTT-CCTGGTGAATCCCTGTAATCACCTGAGTCTCATTCTGTCAGGTGATATC--cagtgagaaggcaacatgtgcggtgagaaagcccagggagtcctggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     614442 100 +   2037526 GTTTT-CCTGGTGAATCCCTGTAATCACCTGAGTC-CATTCTGTCAGGTGATATC--cagtgagaaggcaacatgtgcggtgagaaagcccagggagtcctggg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75290145 102 + 122973662 CTTTTCCCTGGTGAATCCCTGTAATCACCTGAGTCTCATTCTGTCAGGTGATATC--CAGTGAGAaggcaatatgtgcggtgagaaagcccagggagtcctggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31207945 101 + 172585720 CTTTTTCCTGGTGAATCCCTGTAATCACCTGAGTCTCATTCTGTCAGGTGATATC--CAATGAGAAGGCAATATGTGTGGTGA-AAAGCCCAGGGAGTCCTGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30497403 101 - 170955103 CTTTTTCCTGGTGAATCCCTGTAATCACCTGAGTCTCATTCTGTCAGGTGATATC--CAATGAGAAGGCAATATGTGTGGTGA-AAAGCCCAGGGAGTCCTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     781696 101 +   1495729 CTTTTTCCTGGTGAATCCCTGTAATCACCTGAGTCTCATTCTGTCAGGTGATATC--CAATGAGAAGGCAATATGTgtggtga-aaagcccagggagtcctggg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      14379 101 -    811324 CTTTTTCCTGGTGAATCCCTGTAATCACCTGAGTCTCATTCTGTCAGGTGATATC--CAATGAGAAGGCAATATGTgtggtga-aaagcccagggagtcctggg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30055405 101 -  71996105 CTTTTTCCTGGTGAATCCCTGTAATCACCTGAGTCTCATTCTGTCAGGTGATATC--CAATGAGAAGGCAATATGTGTGGTGA-AAAGCCcagggagtcctggg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      49090 101 +    779361 CTTTTTCCTGGTGAATCCCTGTAATCACCTGAGTCTCATTCTGTCAGGTGATATC--CAATGAGAAGGCAATATGTGTGGTGA-AAAGCCCAGGGAGTCCTGGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     706761 101 -   1829203 CTTTTTCCTGGTGAATCCCTGTAATCACCTGAGTCTCATTCTGTCAGGTGATATC--CAATGAGAAGGCAATATGTgtggtga-aaagcccagggagtccaggg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30871190 104 + 171630274 CTTCTCCCTGGTGAATCTTTCTAATCACCTGAGTCTCATTCTCTCAGGGGATATCCAcagtgaaacagcaaggtgcgtggtgagaaagtgcaggaagagctggg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            36965 104 -    750284 CTTCTCCCTGGTCGATCTGTCTAATCACCTGAGTCTCATTCTCTCAGGGGATATCCACAGTGAGACAACAACGTGCGTGGTGAGAAAGCCcaggaagatctggg
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1208189 101 -   1771730 CTTCTCCCTGGTTTATCCCCCTAATTACCTGAGTC-CATTCTGTCAGGTGATATC--CAGTGAAAAGGTAATGTgcatagtggcaaagcccagggagtcctggg
i cebCap1.NW_016107755v1   C 0 I 79717
s aotNan1.NW_018496901v1     476632 104 -    486031 CTTCTCCCTGGTGAATCTGTCTAATCACCTGAGTCTCATTCTCTCAGGGGATATCCACAGTGAGACAGCAACGTGCGTGGTGAGAAAGCCcaggaagacctggg
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           639924  96 +  18854210 CTTCTCCCTGGTGAATCCCTGTAATTATCT-AATCTCAATCTCCCAGATGATATCCACAGTGA-AACTCGGCATGTGC------AAAACCCGAACATACCTGGG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     642839 596 -   1411461 I

a score=1211277.000000
s hg38.chr6_GL000254v2_alt  1838494 122 +   4827813 tgtgaatttttactttgccattt------------------c-ttcctgtgtgac--acgcggtggggcttcacctgtctgagctccagttcctcatctTGTACGTGGCACTGTTTTCTTGGGAGAGTCATTATAAAGCTAAT--
s panTro5.chr6             30685252 122 + 175400573 tgtgaatttttactttgccattt------------------c-ttcctgtgtgac--acgcggtggggcttcacctgtctgggctccagttcctcatctTGTGCGTGGCACTGTTTTCTTGGGAGAGTCATTATAAAGCTAAT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31109221 122 + 173848474 tgtgaatttttactttgccattt------------------c-ttcctgtgtgac--acgcggtggggcttcacctgtctgggctccagttcctcatctTGTACGTGGCACTGTTTTCTTGGGAGAGTCATTATAAAGCTAAT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     614542 121 +   2037526 tgtgaa-ttttactttgccattt------------------c-ttcctgtgtgac--acgcggtggggcttcacctgtctgggctccagttcctcatcttgtacatggcactgttttcttgggagagtcattataaagctaat--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75290247 122 + 122973662 tgtgaatttttacttagccattt------------------c-ttcctgtgtgac--acacggtggggcttcacctgtctgggctccagttcctcatctTGTACGTGACATTGTTTTCTTGGGAGAGTCATTATAAAGCTAAT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31208046 122 + 172585720 TGTGAATTTTTACTTTGCCGTTT------------------C-TTCCTGTGTTAA--ACGCAGTGGGGCTTCACCTGTCTGGGCTCCAGTTCCTCATCTTGTATATGGCACTGTTTTCTTGGGAGAGTCTTTATAAAGCTAAT--
i rheMac8.chr4             C 0 I 314
s macFas5.chr4             30497504 122 - 170955103 TGTGAATTTTTACTTTGCCGTTT------------------C-TTCCTGTGTTAA--ACGCAGTGGGGCTTCACCTGTCTGGGCTCCAGTTCCTCATCTTGTATATGGCACTGTTTTCTTGGGAGAGTCTTTATAAAGCTAAT--
i macFas5.chr4             C 0 I 314
s macNem1.NW_012012100v1     781797 122 +   1495729 tgtgagtttttactttgccattt------------------c-ttcctgtgttac--atgcagtggggcttcacctgtctgggctccagttcctcatcttgtatatggcactgttttcttgggagagtctttataaagctaat--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      14480 122 -    811324 tgtgaatttttactttgccattt------------------c-ttcctgtgttac--acgcagtggggcttcacctgtctgggctccagttcctcatcttgtacatggcactgttttcttgggagagtctttataaagctaat--
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30055506 122 -  71996105 tgtgaatttttactgtgccattt------------------c-ttcctgtgttac--acgcagtggggcttcacctgtctgggctccagttcctcatctTGTACATGGCACTGTTTTCTTGGGAGAGTCTTTATAAAGCTAAT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      49191 140 +    779361 TGTGAATTTTTACTTTGCTGTGTAAAGCAAAGTAATTTTTAC-TTCCTGTGTTAC--ACGCAGTGGGGCTTCACCTGTCTGGGCTCCAGTTCCTCATCTTGTATACGGCACTGTTTTCTTGGGGGAGTCTTTATAAAGCTAAT--
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     706862 122 -   1829203 tgtgaatttttacttagccattt------------------c-ttcctgtgtgac--acgtggtggggcttcacctgtctgggctccagttcctcatcttgtacatggcactgttttcttgggagagtcattataaagctaat--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30871294 124 + 171630274 catgaatttttactttgccattt------------------c-ttcctgtgtgacctacgtggtggggcttcacctgtctgggctccagttccACAATTTCTACGTGACACCGTTTACCTGGGAGGGTTATTACAAAGCTAAT--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            37069 124 -    750284 cgtgaatttttactttgccattt------------------c-ctcctgtgtgacctacgtggtggggcttcacctgtctgggctccggttcctcaatttgtaTGTGACACCCTTTTCCTGGGAGGGTTATTGCAAAGCTAAT--
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1288007 120 -   1771730 TGTgaatttttactttgccattt------------------c-tccctatgtg----acatggtggggcttcacctgtctgggctccagttcctcgatttgtatgtgacatcgtttacctgggagggttattacaaagctaat--
i cebCap1.NW_016107755v1   I 79717 C 0
s aotNan1.NW_018496901v1     476736 124 -    486031 cttgaatttttactttgccattt------------------c-ttcccgtgtgacctacgtggtggggcttcacctgtctgggctccagttcctcaatttgtatgtgacaccgtttacctgggagggttattacaaagctaat--
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           640020 126 +  18854210 TGTGAATTTTTACTCTGCCACTC------------------CATGCCTGTGTGGCTTATGCCATGGGGCTTCGCCTGTGTGGACCCTAGTTCCT-GTCTTTGACATGACAGTGCTTTGCTGGGAGGGTTAGATGGAGTATTATGT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     642839 596 -   1411461 I

a score=834884.000000
s hg38.chr6_GL000254v2_alt  1838616 73 +   4827813 ATAAAGTACCTGtactgtggtttgaatgtgtcctccaaaaagcatgtgttggaaactgaatccacaatgcaac
s panTro5.chr6             30685374 73 + 175400573 ATAAAGTACCTAtactgtggtttgaatgtgtcctccaaaaagcatgtgttggaaactgaatccacaatgcaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31109343 73 + 173848474 ATAAAGTACCTGtactgtggtttgaatgtgtcctccaaaaagcatgtgttggaaactgaatccacaatgcaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     614663 73 +   2037526 ataaagtaCCTGtactgtggtttgaaggtgtcctccaaaaagcatgtgttggaaactgaatccacaatgcaac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75290369 73 + 122973662 ATAAAGTACCTGtactgtggtttgaatgtgtcctccaaaaagcatgtattggaaactgaatccacaatgcaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31208482 73 + 172585720 ataaaGTATCTGtgctgtggtttgaatgtgtcctccaaaaagcatgtgttggaaactgaatccacaatgcaac
i rheMac8.chr4             I 314 C 0
s macFas5.chr4             30497940 73 - 170955103 ataaaGTATCTGtgctgtggtttgaatgtgtcctccaaaaagcatgtgttggaaactgaatccacaatgcaac
i macFas5.chr4             I 314 C 0
s macNem1.NW_012012100v1     781919 73 +   1495729 ataaagtATCTGtgctgtggttttaatgtgtcctccaaaaagcatgtgttggaaactgaatccacaatgccac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      14602 73 -    811324 ataaagtATCTGtgctgtggtttgaatgtgtcctccaaaaagcatgtgttggaaactgaatccacaatgcaac
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30055628 73 -  71996105 ATAAAGTATCTGtgctgtggtttgaatgtgtcctccaaaaagcatgtgttggaaactgaatccacaatgcaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      49331 73 +    779361 ATAAAGTATCTGtgctgtggtttgaatgtgtcctccaaaaagcatgtgttggaaactgaatccataatgcaac
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     706984 73 -   1829203 ataaagtaCCTGtgctgtggtttgaatgtgtcctccaaaaagcatgtgttggaaactgaatccacaatgcaac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30871418 73 + 171630274 ATAAAGTACCTGAgctgtggtttgaatgtgtcctccaaaaagcatgtgttggaaactgaatcctcaatgcaac
i calJac3.chr4             C 0 T 98650
s saiBol1.JH378327            37193 73 -    750284 ATAAAGTACCTAtgctgtggtttgaatgtgtcctccaaaaagcatgtgttgggaactgaatcctcaatgcagc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1288127 73 -   1771730 ataaagtaCCTGtgctgtggtttgaatgtgtcctttaaaaagcatgtgctgggaactgaatcctcagtgcaac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     476860 73 -    486031 ataaagtaCCTGtgctgtggtttgaatgtgtcctccaaaaagcatgtgttgagaactgaatcctcaatgcaac
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           640146 72 +  18854210 ATCAAGTACCTGtgctatgctttgaatgtat-tgccaaaaagcatgtgttggaaacttaatcatgaatgcagc
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     642839 596 -   1411461 I

a score=1225453.000000
s hg38.chr6_GL000254v2_alt  1838689 131 +   4827813 catatcgggaagtgaatcctaatggctgg----ctggccatggaggttccaactttatgaatggattaatactgattataaaagggcttgaggttgaggcaagttcaacctcttgcc--ctcactcacccacttgcc
s panTro5.chr6             30685447 127 + 175400573 catatcgggaagtgaagcctaatggctgg----ctggccatggaggttccaactttatgaatggattaatactgattataaaagggcttgaggttgaggcaagttcaacctcttgcc------ctcacccacttgcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31109416 127 + 173848474 catatcgggaagtgaagcctaatggctgg----ctggccatggaggttcccactttatgaatggattaatactgattataaaagggcttgaggttgaggcaagttcaacctcttgcc------ctcacccacttgcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     614736 131 +   2037526 catatcgggaagtgaagcctaatggctgg----ctggccatggaggttccaactttatgaatggattaatactgattataaaagggcttgaggttgaggcaagttcaacctcttgcc--ctcactcacccacttgcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75290442 131 + 122973662 catatcaggaagtgaagcctaacggctgg----ctggccatggaggttccaactttatgaatggattaatactgattataaaagggcttgaggttgaggcaagttcaacgtcttgcc--ctcactcccccatttccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31208555 131 + 172585720 catattgagaagtgaagcctaataactgg----ctggccatgggggttccaactttatgaatggattaatactgattttaaaagggcttgaggttgaggcaagttcaacctcttgcc--ctcactcacccacttgcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30498013 131 - 170955103 catattgagaagtgaagcctaataactgg----ctggccatgggggttccaactttatgaatggattaatactgattttaaaagggcttgaggttgaggcaagttcaacctcttgcc--ctcactcacccacttgcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     781992 131 +   1495729 catattgagaagtgaagcctaatggctgg----ctggccatgggggttccaactttatgaatggattaatactgattataaaagggcttgaggttgaggcaagttcaacctcttgcc--ctcactcacccacttgcc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      14675 129 -    811324 catattgagaagtgaagcctaatggctga----ctggccatgggggttccaactttatgaatggatt--tactgattataaaagggcttgaggttgaggcaagttcaacctcttgcc--ctcactcacccacctgcc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30055701 131 -  71996105 catattgagaagtgaagcctaatggctgg----ctggccatgggggttccaactttatgaatggattaatactgattataaaagggattgaggttgaggcaagttcaacctcttgcc--ctcactcacccacttgcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      49404 127 +    779361 catattgagaagtgaagcctaatggctgg----ctggccatgggggttccaactttatgaatggattaatactgattataaaagggcttgaggttgaggcaagttcaacctcttgcc------ctcacccacttgcc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     707057 131 -   1829203 catatctagaagtgaagcctaatggctgg----ctatccatgggggttccaactttatgaatagattaatactgattataaaagggcttgaggttgaggcaagttcaacctcttgcc--ctcactaacccacctgcc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30772841 124 + 171630274 catatcgggaggtggaatcttatgacaggtgtttaggacatgagggttccaactttatgaatggattaatactgattatagaagggcttgaggttgaa-----------cccttgcc--ctCACTCACCTACTTGCA
i calJac3.chr4             T 98650 N 0
s saiBol1.JH378327            37266 125 -    750284 cgtatcggtaagtgaaggctaatgg--------tcggccatg-gggttccaaccttacgaatggattcatactgatcacaaaagggcttgaggttgag-caggttccacctcttgcc--ctcactcacccacttgcc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1288200 127 -   1771730 catatcgggaagtgaaggctaatgg--------ctggccacaggggttccaaccttatgaaagaattcatactgattataaaagggcttgaggttgaggcaagttcaacctcttgcc--ctcactcacccacttgcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     476933 127 -    486031 catatcgcgaagtgaaggctaaagg--------ctggtcatgggggttccaaccttatgaatggattcatactgattacaaaagggcttgaggttgaggcaagttcaacttcttgcc--ctcactcacccacttgcc
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           640218 117 +  18854210 tgtgttggcaggcagggacttaaagcaggtatttaggacaggagggctccatcc-catgaatggatgaatgataattacaaaag-------------------tTCAGTCTCTTTCAGGCTTATCCACCCACTTGCC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     642839 596 -   1411461 I

a score=224571.000000
s hg38.chr6_GL000254v2_alt  1838820 26 +   4827813 tttaccaagagatgatacag-caaaaa
s panTro5.chr6             30685574 26 + 175400573 tttaccaagagatgatacag-caaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31109543 26 + 173848474 tttaccaagagatgatacag-caaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     614867 26 +   2037526 tttaccaagagatgatacag-caaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75290573 26 + 122973662 tctaccaagagatgatacag-gaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31208686 26 + 172585720 tctaccaagagatgatacag-caaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30498144 26 - 170955103 tctaccaagagatgatacag-caaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     782123 26 +   1495729 tctaccaagagatgatacag-caaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      14804 26 -    811324 tctaccaagagatgatacag-caaaaa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30055832 26 -  71996105 tctaccaagagatgatacag-caaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      49531 26 +    779361 tctaccaagagatgatacag-caaaaa
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     707188 26 -   1829203 tctaccaagagatgatacag-caaaaa
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            37391 25 -    750284 tccaccaagaggtgat-cac-aaaaca
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1288327 27 -   1771730 tccaccaagagatgatacacaaaaaca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     477060 27 -    486031 tccaccaagagatgatacacaaaaaca
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           640335 26 +  18854210 TCTACCATGAGATGACATGG-CAAAAA
i otoGar3.GL873550         C 0 I 22726
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     642839 596 -   1411461 I

a score=1122009.000000
s hg38.chr6_GL000254v2_alt  1838846 143 +   4827813 gactcaccaaatgccgggatcttgatattagacttcttatcctccagaaccatgaaataggctgctttgctttataaattact-cagtctgc--gtattata-ttacagcaacacaagatgggcAACCTGATACTTAGG--TTTCAG--TT
s panTro5.chr6             30685600 143 + 175400573 gactcaacaaatgctggggtcttgatattagacttcttatccttcagaaccatgaaataggctgctttgctttataaattact-cagtctgt--gtattcta-ttacagcaacacaaaatgggcAACCTGATACTTAGG--TTTCAG--TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31109569 143 + 173848474 gactcaacaaatgctggggtcttgatattagacttcttatccttcagaaccatgaaataggctgctttgctttataaattact-cagtctgt--gtattcta-ttacagcaacacaaaatgggcAACCTGATACTTAGG--TTTCAG--TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     614893 143 +   2037526 gactcaacaaatgctgggatcttgatattagacttcttatcctccagaaccatgaaataggctgctttgctttataaattact-cagtctgt--gtattcta-ttacagcaacacaaaatgggcAACCTGATACTTAGG--TTTCAG--TT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75290599 144 + 122973662 gactcaccaaatgccgggatcttgagattagacttcttatcctccagaaccatgaaataggctgctttgctttataaattact-cagtctgt-ggtgttctc-ttacagcaacacaaaatgggcAACCTGATACTTAGG--TTTCAG--TT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31208712 144 + 172585720 gactcaccaaatgccgggatcttgatattagacttcttgtcctccagaaccatgaaatagactgctatgctttataaaatact-cagtctgt-ggcattcta-ttacagcaacacaaaatggTCAACCTGATATTTCGG--TTTCAG--TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30498170 144 - 170955103 gactcaccaaatgccgggatcttgatattagacttcttgtcctccagaaccatgaaatagactgctatgctttataaaatact-cagtctgt-ggcattcta-ttacagcaacacaaaatggTCAACCTGATATTTCGG--TTTCAG--TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     782149 144 +   1495729 gactcaccaaatgccgggatcttgatattagacttcttgtcctccagaaccatgaaatagactgctatgctttataaaatact-cagtctgt-ggcattcta-ttacagcaacacaaaatggTCAACCTGATATTTCGG--TTTCAG--TT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      14830 150 -    811324 gactcaccaaatgccaggatcttgatactagacttcttgtcctccagaaccatgaaatagactgctatgctttataaaatactccagtctgtgggcattctatttacagcaacacaaaatggTCAACCTG-TATTTCGGGTTTTCAGTTTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30055858 144 -  71996105 gactcaccaaatgccaggatcttgatattagacttcttgtcctccagaaccatgaaatagactgctatgctttataaaatact-cagtctgt-ggcattcta-ttacagcaacacaaaatggTCAACCTGATATTTTGG--TTTCAG--TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      49557 144 +    779361 gactcaccaaatgccaggatcttgatattagacttcttgtcctccagaaccatgaaatagactgctatgctttataaaatact-cagtctgt-ggcattctc-ttacagcaacacaaaatggTCAACCTGATATTTCGG--TTTCAG--TT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     707214 144 -   1829203 gattcaccaaatgccgggatcttgatattagacttcttgtcctccagaaccatgaaatagactgctatgctttataaaatact-cagtctgt-gtcattatg-ttacagcaacacaaaatgggcAACCTGATACTTAAG--TTTCGG--TT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            37416 143 -    750284 ccctcaccacgtgccaggatcttgatattagacgttttacactgcagaaccatgaaacacattgctttgctttaaagattact-caatctgt-gctattcta-ttacag-aacacaaaatgAGCAACCTGATAGTTAGG--TCTCGG--TT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1288354 144 -   1771730 ccctcaccatatgccaggatcttgatattagactttttaccctccagaaccatgaaataaatagctttgctttaaagattact-caatctgt-gctattcta-ttagagcaacacaaaacgggcAACCTGATAGTTAGG--TTTCAG--TT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     477087 144 -    486031 ccctcaccatatgccaggatcttgatattagactttccaccctccagaaccgtgaaacacattgctttgctttaaagattact-caatctgt-gctattcta-ttacagcaacacaaaatgggcAACCTGATAGTCAGG--TTTCAG--TT
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     642839 596 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I

a score=746916.000000
s hg38.chr6_GL000254v2_alt  1838989 83 +   4827813 AGTGGTAGATATTTTTATTTCAAGCATTCCTACTGGAGTATTAG-TTTC-TTCAT-AAGCCCAGAATCTTTGCATTTTAGCAA-CAA
s panTro5.chr6             30685743 83 + 175400573 AGTGGTAGATATTTTTATTTCAAGCATTCCTACTAGAGTATTAG-TTTC-TTCGT-AAGCCCAGAATCTTTGCATTTTAGCAA-CAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31109712 83 + 173848474 AGTGGTAGATATTTTTATTTCAAGCATTCCTACTAGAGTATTAG-TTTC-TTCGT-AAGCCCAGAATCTTTGCATTTTAGCAA-CAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     615036 82 +   2037526 AGTGGTAGATATTTTTATTTCAAGCATTCCTACTAGAGTATTAG-TTTC-TTTGT-AATCCCAGAATCTTTGCATTTTAGC-A-CAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75290743 83 + 122973662 AGTGGTAGATAGTTTTATTTCAAGCATTCCTACTAGAGTATTAG-TTTC-TTCAT-AAGCCCAGAATCTTTGCATTTTAGCAA-CAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31208856 81 + 172585720 AGTGGTAGGTATTTTTATTTCAAGCATTCCTACTAAAGTATTAG-TTTC-TTCGT-AAGCCCAGAATC--TGCATTTTAGCAA-CAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30498314 81 - 170955103 AGTGGTAGGTATTTTTATTTCAAGCATTCCTACTAAAGTATTAG-TTTC-TTCGT-AAGCCCAGAATC--TGCATTTTAGCAA-CAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     782293 83 +   1495729 AGTGGTAGGTATTTTTATTTCAAGCATTCCTATTAGAGTATTAG-TTTC-TTCGT-AAGCCCAGAATCTTTGCATTTTAGCAA-CAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      14980 81 -    811324 AGTGGTAGGTAATTTTATTCAAGGCATTCCTACT--AGTATTGT-TTCT-TTCGTAAAGCCCAGAATC--TGCATTTTAGCAAGCAA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30056002 83 -  71996105 AGTGGTAGGTATTTTTATTTCAAGCATTCCTACTAAAGTATTAG-TTTC-TTCGT-AAGCCCAGAATCTTTGCATTTTAGCAA-CAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      49701 81 +    779361 AGTGGTAGGTATTTTTATTTCAAGCATTCCTGCTAGAGTATTAG-TTTC-TTCGT-AAGCCCAGAATC--TGCATTTTAGCAA-CAA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     707358 84 -   1829203 AGTGGTAGGTATTTTTATTTCAAGCATTTCTACTAGAGTATTAG-TTCCTTTTGT-AAGCCCAGAATCTTTGCATTTTAGCAA-CAA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            37559 80 -    750284 AGTGGTAGATATTTTTATCTCAGACATTCCTCCTAGAGTATTAG-TTTC-TGTGT-AAGCCCGGAATCTTTGCATTTTAGCAA----
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1288498 83 -   1771730 AGTGGTAGATACTTTTATTTCAGGCATTCCTGCTAGAGTATTAG-TTTC-TTTGT-AAGCCCAGAATCTTTGCATTTTAGCAA-CAA
i cebCap1.NW_016107755v1   C 0 I 7
s aotNan1.NW_018496901v1     477231 84 -    486031 AGTGGTGGATATTTTTATTTCAGGCATTCCTGCTAGAGTATTAGTTTTC-TTTGT-AAGACCGGAATCTTTGCATTTTAGCAA-CAA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     643435 83 -   1411461 AGTGATAGATATTTTTATTTCAGATATTCTGGCTAAAGTATTAG-TTTC-TTCCT-AAGCCCAGGATCTTTGCATTTTAGCAA-CAA
i proCoq1.NW_012149775v1   I 596 I 2
e mm10.chr17               58956779 36400 -  94987271 I
e otoGar3.GL873550           640361 22726 +  18854210 I

a score=15744.000000
s hg38.chr6_GL000254v2_alt  1839072 3 +   4827813 CAA
s panTro5.chr6             30685826 3 + 175400573 CAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31109795 3 + 173848474 CAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     615118 3 +   2037526 CAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75290826 2 + 122973662 CA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31208937 3 + 172585720 CAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30498395 3 - 170955103 CAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     782376 3 +   1495729 CAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      15061 3 -    811324 CAA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30056085 3 -  71996105 CAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      49782 3 +    779361 CAA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     707442 3 -   1829203 CAA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            37639 3 -    750284 CAA
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643518 2 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     477315 0 -    486031 C
e cebCap1.NW_016107755v1    1288581 7 -   1771730 I

a score=1580369.000000
s hg38.chr6_GL000254v2_alt  1839075 307 +   4827813 ATAAGTC-----------------tt--tttt---------ttttttttttttgagactgagtttca-ctcttgtcacccaggctagagtgcaatggcatgacctt-ggctcactg-caaacttggcctcccaggtttaagtgattctcctgcttcagcct--cccaagtagctgggattacaggcgcctgctacc--acgcccagctaatttttgtatttttag-tagagacagag-ttt-catcatgttggccagctggt-ctcgaactcctgatctcaggtgatccacccaccttggcct-cccaaag-tgctgggattataggcatgagccacca-cgTT-CCACC
s panTro5.chr6             30685829 313 + 175400573 AGAAGTCt-----------tcttttt--tttt---------ttttttttttttgagactgaatttca-ctcttgtcacccaggctagagtgcaatggcatgacctt-ggctcactg-caaacttggcctcccaggtttaagtgattctcctgcttcagcct--cccaagtagctgggattacaggcacctgctacc--actcccagctaatttttgtatttttag-tagagacagag-ttt-catcatgttggccagctggt-ctcgaactcctgatctcaggtgatccacccaccttggcct-cccaaag-tgctgggattataggcatgagccacca-cgct-cCACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31109798 304 + 173848474 AGAAGTC----------------------ttc---------ttttttttttttgagactgaatttca-ctcttgtcacccaggctagagtgcaatggcatgacctt-ggctcactg-caaacttggcctcccaggtttaagtgattctcctgcttcagcct--cccaagtagctgggattacaggcacctgctacc--actcccagctaatttttgtatttttag-tagagacagag-ttt-catcatgttggccagctggt-ctcgaactcctgatctcaggtgatccacccaccttggcct-cccaaag-tgctgggattataggcatgagccacca-cgct-cCACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     615121 311 +   2037526 AGAAGTC------------ttctttt--tttt---------ttttttttttttgagactgaatttca-ctcttgtcacccaggctagagtgcaatggcatgacctt-ggctcactg-caaacttggcctcccaggtttaagtgattctcctgcttcagcct--cccaagtagctgggattacaggcgcctgctacc--acgcccagctaatttttgtatttttag-tagagacagag-ttt-catcatgttggccagctggt-ctcgaactcctgatctcaggtgatccaccca-cttggcct-cccaaag-tgctgggattataggcatgagccacca-cgct-cCACC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75290828 304 + 122973662 --AAGTC----------------------ttt---------ttttttttttttaagactgagtttca-ctcttgtcacccaggctagagtgcaatggcatgatctt-ggctcactg-caaacttgacctcccaggtttaagtgattctcctgcttcagcct--cccaagtagctgggattacaggtgcctgctacc--acacccagctaatttttgtatttttag-tagagacagag-ttt-catcatgttggccagctggt-ctcaaactcctgatccccggtgatccacccacctgggcctccccaaag-tgctgggattataggcatgagccacca-cactcCCACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31208940 325 + 172585720 AGACGTCTTTTTTGtttgtttttttg--tttt---------tgttttttttttgagactgagtttca-ctcttgtcacctaggctagagtacaatggcatgatctt-ggctcaccg-caaacttggcctcctgggtttaagtgattctcctgccttagcct--cccaagtagctgggattacaggcacgcgctacc--aagcccagctaatttttgtatttttag-tagagatgggggttt-caccatgttggccagctggt-ctcgaactcctgatctcaggtgatccacccacctcagcct-cccaaag-tgctgggattgtaggcatgagccaccg-cact-cCACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30498398 325 - 170955103 AGACGTCTTTTTTGtttgtttttttg--tttt---------tgttttttttttgagactgagtttca-ctcttgtcacctaggctagagtacaatggcatgatctt-ggctcaccg-caaacttggcctcctgggtttaagtgattctcctgccttagcct--cccaagtagctgggattacaggcacgcgctacc--aagcccagctaatttttgtatttttag-tagagatgggggttt-caccatgttggccagctggt-ctcgaactcctgatctcaggtgatccacccacctcagcct-cccaaag-tgctgggattgtaggcatgagccaccg-cact-cCATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     782379 327 +   1495729 AGACGTCTTGTTTGtttgtttgtttggttttt---------ttttttttttttgagactgagtttca-ctcttgtcacccaggctagagtgcaatggcatgatctt-ggctcacca-caaacttggcctcctgggtttaagtgattcttctgccttagcct--cccaagtagctgggattacaggcacgcgctacc--aagtccagctaatttttgtatttttag-tagagatgggggttt-caccatgttggccagctggt-ctcgaactcctgatcgcaggtgatccacccacctcagcct-cccaaag-tgctgggattgtaggcatgagccactg-cact-cCACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      15064 334 -    811324 AGAC--TCTTTTTGtttttttttttt--gttt---------tgtttttgttttgagactgagtttcacctcgtgtcacccaggctagagtacaatggcatgatcttgggctcaccgccaaacttggcctcctgggtttaagtgattctcctgccttagcctcccccaggtagctgggattacaggcacgcactacccaaggcccagctaatttttgtatttttagatagagatgggggtttccaccatgttggccagccggtcctcggaactctgatctc-ggtgatccacccacctcagcct-cccaaagttgctgggagtgtaggcatgagcacccgcCACT-CCACC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30056088 319 -  71996105 AGACGTCttttttgtttgtttgtttg--tttg---------------ttttttgagactgagtttca-cttttgtcacccaggctagagtgcaatggcatgatctt-ggctcaccg-caaacttggcctcctgggtttaagtgattctcctgccttagcct--cccaagtagctgggattacaggcacacgctacc--aagcccagctaatttttgtatttttag-tagagatgggggttt-caccatgttggccagctggt-ctcgaactcctgatctcaggtcatccacccacctcagcct-cccaaag-tgctgggattgtaggcatgagccaccg-cact-cCACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      49785 334 +    779361 AGACGTCttttttgtttgtttgtttt--tttgtttttgtttttgtttttttttgagactgagtttca-ctcgtgtcacccaggctagagtacaatggcatgatctt-ggctcaccg-caaacttggcctcctgggtttaagtgattctcctgccttagcct--cccaggtagctgggattacaggcacgcactacc--aagcccagctaatttttgtatttttag-tagagatggggattt-caccatgttggccagccggt-ctcgaactcctgatctcaggtgatccacccacctcagcct-cccaaag-tgctgggattgtaggcatgagccaccg-cact-cCACC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     707445 311 -   1829203 AGACGTCttttt----------------tttt---------ttttttttttttgagactgagtttca-ctcttgtcacccaggctagggtgcaatggcatgatctt-ggctcaccg-caaacttggcctcctgggtttaagtgattctcctgccttagcct--ccgaagtagctgggattacaggcgtgcgctagg--aagcccagctaatttttgtatttttag-tagagatgggggttt-caccatgttggccagctggt-ctccagctcctgatctcaggtgatccacccgcctcagcct-cccaaag-tgctgggattataggcatgagccgctg-cact-cCACC
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643518   2 -   1411461 I
e saiBol1.JH378327            37642   0 -    750284 C
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     477315   0 -    486031 C
e cebCap1.NW_016107755v1    1288581   7 -   1771730 I

a score=17381.000000
s hg38.chr6_GL000254v2_alt  1839382 2 +   4827813 AG
s panTro5.chr6             30686142 2 + 175400573 AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31110102 2 + 173848474 AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     615432 2 +   2037526 AG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75291132 2 + 122973662 AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31209265 2 + 172585720 AG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30498723 2 - 170955103 AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     782706 2 +   1495729 AG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      15398 2 -    811324 AG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30056407 2 -  71996105 AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      50119 2 +    779361 AG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     707756 2 -   1829203 AG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            37642 2 -    750284 AG
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018496901v1     477315 2 -    486031 AG
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643518 2 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e cebCap1.NW_016107755v1    1288581 7 -   1771730 I

a score=42091.000000
s hg38.chr6_GL000254v2_alt  1839384 9 +   4827813 AAGT-CTTAA
s panTro5.chr6             30686144 9 + 175400573 AAGT-CTTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31110104 9 + 173848474 AAGT-CTTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     615434 9 +   2037526 AAGT-CTTAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75291134 9 + 122973662 AAGT-CTTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31209267 7 + 172585720 AAGT-C--AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30498725 7 - 170955103 AAGT-C--AA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     782708 7 +   1495729 AAGT-C--AA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      15400 8 -    811324 AAGTGC--AA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30056409 7 -  71996105 AAGT-C--AA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      50121 7 +    779361 AAGT-C--AA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     707758 7 -   1829203 AAGT-C--AA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            37644 9 -    750284 AAGT-CTTAA
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018496901v1     477317 9 -    486031 AAGT-CTTAA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     643520 9 -   1411461 AAGT-CTTAA
i proCoq1.NW_012149775v1   I 2 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e cebCap1.NW_016107755v1    1288581 7 -   1771730 I

a score=136968.000000
s hg38.chr6_GL000254v2_alt  1839393 14 +   4827813 TTAAT-GCAAAGAAA
s panTro5.chr6             30686153 14 + 175400573 TTAAT-GCAAAGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31110113 14 + 173848474 TTAAT-GCAAAGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     615443 14 +   2037526 TTAAT-GCAAAGAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75291143 14 + 122973662 TTAAT-GCAAAGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31209274 14 + 172585720 TTGAT-GCAAAGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30498732 14 - 170955103 TTGGT-GCAAAGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     782715 14 +   1495729 TTGAT-GCAAAGAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      15408 15 -    811324 TTGATGGCAAAGAAA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30056416 14 -  71996105 TTGAT-GCAAAGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      50128 14 +    779361 TTGAT-GCAAAGAAA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     707765 14 -   1829203 TTGAT-GCAAAGAAA
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            37653 14 -    750284 TTAAT-GCAAAGAAA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1288588 14 -   1771730 TTAAT-GGAAAGAAA
i cebCap1.NW_016107755v1   I 7 C 0
s aotNan1.NW_018496901v1     477326 14 -    486031 TTAAT-GCAAAGAAA
i aotNan1.NW_018496901v1   C 0 C 0
s proCoq1.NW_012149775v1     643529 14 -   1411461 TTAAT-GCAAAGAAA
i proCoq1.NW_012149775v1   C 0 I 33669
e mm10.chr17               58956779 36400 -  94987271 I
e otoGar3.GL873550           640361 22726 +  18854210 I

a score=158627.000000
s hg38.chr6_GL000254v2_alt  1839407 21 +   4827813 ATCAAT-CTATAGATTTGA-TGG
s panTro5.chr6             30686167 21 + 175400573 ATCCAT-CTATAGATTTGA-TGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31110127 21 + 173848474 ATCCAT-CTATAGATTTGA-TGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     615457 21 +   2037526 ATCAAT-CTATAGATTTGA-TGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75291157 21 + 122973662 ATCGAT-CTATAGATTTGA-TGG
i nomLeu3.chr1a            C 0 M 100
s rheMac8.chr4             31209288 21 + 172585720 ATCGAT-CTATAGATTTGA-TGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30498746 21 - 170955103 ATCGAT-CTATAGATTTGA-TGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     782729 21 +   1495729 ATCGAT-CTATAGATTTGA-TGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      15423 23 -    811324 ATCGGTCCTATAGATTTGATTGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30056430 21 -  71996105 ATTGAT-CTATAGATTTGA-TGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      50142 21 +    779361 ATCGGT-CTATAGATTTGA-TGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     707779 21 -   1829203 ATCGAT-CTATAGATTTGA-TGG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            37667 21 -    750284 ATCGAA-GTATAGATGTGA-TGG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1288602 21 -   1771730 GTCAAT-GTATAGATGTGA-TGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     477340 21 -    486031 ATCGAT-GCATAGATGTGA-TGG
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I

a score=93387.000000
s hg38.chr6_GL000254v2_alt  1839428 12 +   4827813 AAATTTGGACTC
s panTro5.chr6             30686188 12 + 175400573 AAATTTGGACGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31110148 12 + 173848474 AAATTTGGACGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     615478 12 +   2037526 AAATTTGGACTC
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31209309 12 + 172585720 AAATTTGGACTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30498767 12 - 170955103 AAATTTGGACTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     782750 12 +   1495729 AAATTTGGACTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      15446 12 -    811324 AAATTTGGACTC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30056451 12 -  71996105 AAATTTGGACTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      50163 12 +    779361 AAATTTGGACTC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     707800 12 -   1829203 AAATTTGGACTC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            37688 12 -    750284 AAATTTGAACTC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1288623 12 -   1771730 AAATTTGAACTC
i cebCap1.NW_016107755v1   C 0 I 71
s aotNan1.NW_018496901v1     477361 12 -    486031 AAATTTGAACTC
i aotNan1.NW_018496901v1   C 0 I 66
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e nomLeu3.chr1a            75291178 100 + 122973662 M

a score=78342.000000
s hg38.chr6_GL000254v2_alt  1839440 16 +   4827813 CTATATCCTACTTTTT
s panTro5.chr6             30686200 16 + 175400573 CTATATCCTACTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31110160 16 + 173848474 CTATATCCTACTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     615490 16 +   2037526 CTATATCCTACTTTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31209321 16 + 172585720 CTACATCCTATTTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30498779 16 - 170955103 CTACATCCTATTTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     782762 16 +   1495729 TTACATCCTATTTTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      15458 16 -    811324 CTACATCCTATTTTTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30056463 16 -  71996105 CTACATCCTATTTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      50175 16 +    779361 CTACATCCTATTTTTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     707812 16 -   1829203 CTACATCCTACTTTTT
i colAng1.NW_012115577v1   C 0 I 26
s saiBol1.JH378327            37700 12 -    750284 ----ATCCTAGCATTT
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     477373 66 -    486031 I
e cebCap1.NW_016107755v1    1288635 71 -   1771730 I
e nomLeu3.chr1a            75291178 100 + 122973662 M

a score=5005.000000
s hg38.chr6_GL000254v2_alt  1839456 1 +   4827813 A
s panTro5.chr6             30686216 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31110176 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     615506 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31209337 1 + 172585720 A
i rheMac8.chr4             C 0 I 47
s macFas5.chr4             30498795 1 - 170955103 A
i macFas5.chr4             C 0 I 17
s macNem1.NW_012012100v1     782778 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 I 47
s cerAty1.NW_012002513v1      15474 1 -    811324 A
i cerAty1.NW_012002513v1   C 0 I 47
s chlSab2.chr17            30056479 1 -  71996105 A
i chlSab2.chr17            C 0 I 47
s manLeu1.NW_012106264v1      50191 1 +    779361 A
i manLeu1.NW_012106264v1   C 0 I 47
s saiBol1.JH378327            37712 1 -    750284 A
i saiBol1.JH378327         C 0 I 17
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     477373 66 -    486031 I
e cebCap1.NW_016107755v1    1288635 71 -   1771730 I
e colAng1.NW_012115577v1     707828 26 -   1829203 I
e nomLeu3.chr1a            75291178 100 + 122973662 M

a score=14446.000000
s hg38.chr6_GL000254v2_alt  1839457 28 +   4827813 TCCCACTCCTATATACTACTCATAAGGA-------------
s panTro5.chr6             30686217 28 + 175400573 TCCCACTCCTATATACTACTCCTTATTA-------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31110177 28 + 173848474 TCCCACTCCTATATACTACTCCTTATTA-------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     615507 28 +   2037526 TCCCACTCCTATATACTACTCCTTATTA-------------
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             30498813 15 - 170955103 -------------TGTTACTCCTTATCA-------------
i macFas5.chr4             I 17 I 15
s saiBol1.JH378327            37730 28 -    750284 -------------TGCTGCTCCTTATTAGTGTCCCAGAAAA
i saiBol1.JH378327         I 17 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     477373 66 -    486031 I
e cebCap1.NW_016107755v1    1288635 71 -   1771730 I
e colAng1.NW_012115577v1     707828 26 -   1829203 I
e manLeu1.NW_012106264v1      50192 47 +    779361 I
e chlSab2.chr17            30056480 47 -  71996105 I
e cerAty1.NW_012002513v1      15475 47 -    811324 I
e macNem1.NW_012012100v1     782779 47 +   1495729 I
e rheMac8.chr4             31209338 47 + 172585720 I
e nomLeu3.chr1a            75291178 100 + 122973662 M

a score=-1790.000000
s hg38.chr6_GL000254v2_alt  1839485 5 +   4827813 GTATA
s panTro5.chr6             30686245 5 + 175400573 GTGTC
i panTro5.chr6             C 0 I 10
s panPan2.chr6             31110205 5 + 173848474 GTGTC
i panPan2.chr6             C 0 I 10
s gorGor5.CYUI01015528v1     615535 5 +   2037526 GTGTC
i gorGor5.CYUI01015528v1   C 0 I 10
s colAng1.NW_012115577v1     707854 4 -   1829203 CTTT-
i colAng1.NW_012115577v1   I 26 I 1
s saiBol1.JH378327            37758 2 -    750284 GT---
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     477373 66 -    486031 I
e cebCap1.NW_016107755v1    1288635 71 -   1771730 I
e manLeu1.NW_012106264v1      50192 47 +    779361 I
e chlSab2.chr17            30056480 47 -  71996105 I
e cerAty1.NW_012002513v1      15475 47 -    811324 I
e macNem1.NW_012012100v1     782779 47 +   1495729 I
e macFas5.chr4             30498828 15 - 170955103 I
e rheMac8.chr4             31209338 47 + 172585720 I
e nomLeu3.chr1a            75291178 100 + 122973662 M

a score=39578.000000
s hg38.chr6_GL000254v2_alt  1839490 7 +   4827813 GAACTAT
s panTro5.chr6             30686260 7 + 175400573 GAACTAT
i panTro5.chr6             I 10 C 0
s panPan2.chr6             31110220 7 + 173848474 GAACTAT
i panPan2.chr6             I 10 C 0
s gorGor5.CYUI01015528v1     615550 7 +   2037526 GAACTAT
i gorGor5.CYUI01015528v1   I 10 C 0
s rheMac8.chr4             31209385 7 + 172585720 GAACTGT
i rheMac8.chr4             I 47 C 0
s macFas5.chr4             30498843 7 - 170955103 GAACTGT
i macFas5.chr4             I 15 C 0
s macNem1.NW_012012100v1     782826 7 +   1495729 GAACTGT
i macNem1.NW_012012100v1   I 47 C 0
s cerAty1.NW_012002513v1      15522 7 -    811324 GAACTGT
i cerAty1.NW_012002513v1   I 47 C 0
s chlSab2.chr17            30056527 7 -  71996105 GAACTGT
i chlSab2.chr17            I 47 C 0
s manLeu1.NW_012106264v1      50239 7 +    779361 GAACTGT
i manLeu1.NW_012106264v1   I 47 C 0
s colAng1.NW_012115577v1     707859 7 -   1829203 GAACTGT
i colAng1.NW_012115577v1   I 1 C 0
s saiBol1.JH378327            37760 7 -    750284 GAACTGT
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     477373 66 -    486031 I
e cebCap1.NW_016107755v1    1288635 71 -   1771730 I
e nomLeu3.chr1a            75291178 100 + 122973662 M

a score=4364677.000000
s hg38.chr6_GL000254v2_alt  1839497 596 +   4827813 TTTCCTTCTCTACTTGGTCTGCCCATTTCTACTTCCTGCCATATCGGCAGGCTATGTTTGCCTCACCTCAAAGATCTGCCTTCCTCAGTTTTAGATCTTAAATCTTTTTAAGCC-AGACTCCAAGGGATCtttaacaaatatttatcgaacccttcctgtgttcaaagaatgttgtgaggtccagggtgggactagggggcgagaaaggttcctgcgctgaaggaatctaagatttagtaacaatg-aataaacagacttgaagataactattgtggttagcgctgaaagaaacgtacaaaatgccaaaagtcaaggaggaaactatgttttctaggacagtggttcccaacatttttggcatcagggaccggtttcatggaagacaattttt-----------------cggaggggtggttttgggatgattcaagcgcgttacctgtattgtggactttatttctattattacattataatacataatgaaataattatacaactcaccataatgtagagtcagtaggagccctgagcttgttttcctgcaactagacagtcccatctgagggtgatgggagacactgacaggtcatcaggcattagattct
s panTro5.chr6             30686267 594 + 175400573 TTTCCTTCTCTACTTGGTCTGCCCATTTCTACTTCCTGCCATATCGGCAGGCTATGTTTGCCTCACCTCAAAGATCTGCCTTCCTCAGTTTTAGATCTTAAATCTTTTTAAGCC-AAACTCCAAGGGATCtttaacaaatatttattgaacccttcctgtgttcaaagaatgttgtgagatccagggtgggactagggggcgagaaaagttcctgcgctgaaggaatctaagatttagtaacaatg-aataaacagacttgaagataactattgcggttagtgctgaaagaaacgtacaaaatgccaaaagtcaaggaggaaac--tgttttctaggacagtggttcccaacatttttggcatcagggaccggtttcatggaagacaattttt-----------------cggaggggtggtttcgggatgattcaagcgcgttacatgtattgtggactttatttctattattacattataatacataatgaaataattatacaactcaccataatgtagagtcagtaggagccctgagcttgttttcctgcaactagacagtcccatctgagggtgatgggagacactgacaggtcatcatgcattagattct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31110227 596 + 173848474 TTTCCTTCTCTACTTGGTCTGCCCATTTCTACTTCCTGCCATATCGGCAGGCTATGTTTGCCTCACCTCAAAGATCTGCCTTCCTCAGTTTTAGATCTTAAATCTTTTTAAGCC-AAACTCCAAGGGATCtttaacaaatatttattgaacccttcctgtgttcaaagaatgttgtgaggtccagggtgggactagggggcgagaaaagttcctgcgctgaaggaatctaagatttagtaacaatg-aataaacagacttgaagataactattgcggttagtgctgaaagaaacgtacaaaatgccaaaagtcaaggaggaaactatgttttctaggacagtggttcccaacatttttggcatcagggaccggtttcatggaagacaattttt-----------------cggaggggtggtttcgggatgattcaagcgcgttacatgtattgtggactttatttctattattacattataatacataatgaaataattatacaactcaccataatgtagagtcagtaggagccctgagcttgttttcctgcaactagacagtcccatctgagggtgatgggagacactgacaggtcatcatgcattagattct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     615557 596 +   2037526 TTTCCTTCTCTACTTGGTCTGCCCATTTCTACTTCCTGCCATATCGGCAGGCTATGTTTGCCTCACCTCAAAGATCTGCCTTCCTCAGTTTTAGATCTTAAATCTTTTTAAGCC-AAACTCCAAGGGATCtttaacaaatatttattgaacccttcctgtgttcaaagaatgttgtgaggtccagggtgggactagggggcgagaaaagttcctgcgctgaaggaatctaagatttagtaacaatg-aataaacagacttgaagataactattgcggttagcgctgaaagaaacgtacaaaatgccaaaagtcaaggaggaaactatgttttctaggacagtggttcccaacatttttggcatcagggaccggtttcatggaagacaattttt-----------------cggaggggtggtttcgggatgattcaagcgcgttacatgtattgtggactttatttctattattacattataatacataatgaaataattatacaactcaccataatgtagagtcagtaggagccctgagcttgttttcctgcaactagacagtaccatctgagggtgatgggagacatcgacaggtcatcatgcattagattct
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31209392 594 + 172585720 TTTCCTTCTCTACTTGGTCTGCCCATTTCTACTTCCTGCCATATCGGCAGGCTATGTTTGCCTTACCTCAAAGATCTGCCTTCCTCAGTTTTAGATCTTAAATCTTTTTAAGCC-AAACTCCAAGGAATCTTTTacaaatatttattgaacccttcctgtgttcacagaatgttgtgaggtccagggtgggactaggtggcgagaaaagttcctgcaccgaaggaacctaagatttagtaacaatg-aataaacaGACTTAAAGATAACTATTGTGGTTAGTGCTGAAAGAAACGTACAAAATGCTAAAAGTCAGGGAGGAAAC--TGTTTTCTAGGAcagtggttcccaacatttttggcacaagggactggtttcatggaagacaattttt-----------------cggaggagtggtttggggatgattcaagcacataacatttattgtggactttatttatattattacattgtaacatataatgaaataattatacaactcaccataatgtaaagtcagtaggagccctgagcttgttttcctgcaatgagacagtcccatctgagggtgatgggagacactgacaggtcatcaggcattagattct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30498850 594 - 170955103 TTTCCTTCTCTACTTGGTCTGCCCATTTCTACTTCCTGCCATATCGGCAGGCTATGTTTGCCTTACCTCAAAGATCTGCCTTCCTCAGTTTTAGATCTTAAATCTTTTTAAGCC-AAACTCCAAGGAATCTTTTACAAATATTTATTGAACCCTTCCTGTGTTCACAGAATGTTGTGAGGTCCAGGGTGGGACTAGGTGGCGAGAAAAGTTCCTGCACCGAAGGAACCTAAGATTTAGTAACAATG-AATAAACAGACTTAAAGATAACTATTGTGGTTAGTGCTGAAAGAAACGTACAAAATGCTAAAAGTCAGGGAGGAAAC--TGTTTTCTAGGAcagtggttcccaacatttttggcacaagggactggtttcatggaagacaattttt-----------------cggaggggtggtttggggatgattcaagcacataacatttattgtggactttatttatattattacattgtaacatataatgaaataattatacaactcaccataatgtaaagtcagtaggggccctgagcttgttttcctgcaatgagacagtcccatctgagggtgatgggagacactgacaggtcatcaggcattagattct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     782833 594 +   1495729 TTTCCTTCTCTACTTTGTCTGCCCATTTCTACTTCCTGCCATATCGGCAGGCTATGTTTGCCTTACCTCAAAGATCTGCCTTCCTCAGTTTTAGATCTTAAATCTTTTTAAGCC-AAACTCCAAGGAATCttttacaaatatttattgaacccttcctgtgttcacagaatgttgtgaggtccagggtgggactaggtggcgagaaaagttcctgcactgaaggaacctaagatttagtaacaatg-aataaacagacttaaagataactattgtggttagtgctgaaagaaacgtacaaaatgctaaaagtcagggaggaaac--tgttttctaggacagtggttcccaacatttttggcacaagggactggtttcatggaagacaattttt-----------------cggaggagtggtttggggatggttcaagcacataacatttattgtggactttatttatatgattacattgtaatatataatgaaataattatacaactcaccataatgtaaagtcagtaggggccctgagcttgttttcctgcaatgagacagtcccatctgagggtgatgggagacactgacaggtcatcaggcattagattct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      15529 594 -    811324 TTTCCTTCTCTACTTGGTCTGCCCATTTCTACTTCCTGCCATATCGGCAGGCTATGTTTGCCTTACCTCAAAGATCTGCCTTCCTCAGTTTTAGATCTTAAATCTTTTTAAGCC-AAACTCCAAGGAATCttttacaaatatttattgaacccttcctgtgttcacagaatgttgtgaggtccagggtgagactaggtggcgagaaaagttcctgcactgaaggaacctaagatttagtaacaatg-aataaacagacttaaagataactattgtggttagtgctgaaagaaacgtacaaaatgctaaaagtcagggaggaaac--tgttttctaggacagtggttcccaacatttttggcacaagggactggtttcatggaagacaattttt-----------------cggaggggtggtttggggatgattcaagcacataacatttattgtggactttatttatatgattacattgtaatatataatgaaacaattatacaactcaccataatgtaaagtcagtaggggccctgagcttgttttcctgcaatgagacagtcccatctgagggtgatgggagacactaacaggtcatcaggcattagattct
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30056534 594 -  71996105 TTTCCTTCTCTACTTGGTCTGCCCATTTCTACTTCCTGCCATATCGGCAGGCTACGTTTGCCTTACCTCAAAGATCTGCCTTCCTCAGTTTTAGATCTTAAATCTTTTTAAGCC-AAACTCCAAGGGATCTTTTAGaaatatttattgaacccttcctatgttcacagaatgttgtgaggtccagggtgggactaggtggcgagaaaagttcctgcactgaaggaacctaagatttagtaacaatg-aatacacagacttaaagataactattgtggttagtgctgaaagaaacgtacaaaatgctaaaagtcagggaggaaac--tgttttctaggacagtggttcccaacatttttggcacaagggactggtttcatggaagacaattttt-----------------cggaggggtggtttggggatgattcaagcacataacatttattgtggactttatttgtatgattacattgtaatatataatgaaataattatacaactcaccataatgtaaagtcagtaggggtcctgagattgttttcctgcaatgagacagtcccatctgagggtgatgggagacactgacaggtcatcaggcattagattct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      50246 594 +    779361 TTTCCTTCTCTACTTGGTCTGCCCATTTCTACTTCCTGCCATATCGGCAGGCTATGTTTGCCTTACCTCAAAGATCTGCCTTCCTCAGTTTTAGATCTTAAATCTTTTTAAGCC-AAACTCCAAGGAATCttttacaaatatttattgaacccttcctgtgttcacagaatgttgtgaggtccagggtgagactaggtggcgagaaaagttcctgcactgaaggaacctaagatttagtaacaatg-aataaacagacttaaagataactattgtggttagtgctgaaagaaacgtacaaaatgctaaaagtcaggaaggaaac--tgttttctaggacagtggttcccaacatttttggcacaagggactggtttcatggaagacaattttt-----------------cggaggggtggtttggggatgattcaagcacataacatttattgtggactttatttatatgattacattgtaatatataatgaaataattatacaactcaccataatgtaaagtcagtaggggccctgagcttgttttcctgcaatgagacagtcccatctgagggtgatgggagacactgacaggtcatcaggcattagattct
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     707866 594 -   1829203 TTTCCTTCTCTACTTGGTCTGCCCATTTCTATTTCCTGCCATATCGGCAGGCTATGTTTGCCTTACCTCAAAGATCAGCCTTCCTCAGTTTTACATCTTAAATCTTTTTAAGCC-AAACTCCAAGGGATCttttacaaatatttattgaacccttcctgtgttcaaagaatgttgtgaagtccagggtgggactagggggcaagaaaggttcctgcgctgaaggaacctaagatttagtaacaatg-aataaacagacttaaagataactattgtggttagtgctgaaagaaacgtacaaaatgctaaaagtcagggaggaaac--tgttttctaggacagtggttcccaacatttttggcactagggaccggtttcatggaagacaattttt-----------------cggaggggtggtttggggatgattcaagcacattacatttattgtggactttatttctattattacattgtaatatgtaatgaaataattatacaatgcaccgtaatgtaaagtcagtaggagccctgagcttgttttcctgcaatgagacagtcccatctaagggtgatgggagacactgacaggtcatcaggcattagattct
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            37767 606 -    750284 TTTCCTTCTCTGCTTGCTCTGCCCATTTCTACTTCC-ACCATATTGGCGTTCTATGTTTGCCTTACCTCATAGGTCGGCTTTCCTCAGTTTTAAATCTGAAACCTTTCTAAGCCAAAACTCCAACAGAT-TTTAACAAATATTTACTGAACCCTTCCTGTGTTCAAAGAATATTGTGAGGTTCAGAGTGGGACTAGGGGCCAAGAATGTTTCCTGTGCTGACGGAACCTAAGATTTAATGACAGTG-AAAAAACAGA----CAGATAACTATTGTGGTTAGTACTGAAAGAAAGGTACAAAATGCTAAAAGTCAGAGAGGAAAC--TGTTTTCTAAGATGgtggttcccaacgtttttggcaccatggaccgatttcatagaagacaaattttccacggacaagttgggagggagggatgttttcgggatgaatcaagcgtattatatttattgtggactttatttctattattacattgtaatgtataatgaaatatttatataattcaccataatgtagaatcagtaggaatcctgaacttgttttcctgcaactagacaatcccatctagtggtgatgggatacactgagaggtcatcaggcattggattct
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1288706 597 -   1771730 TTTCCTTCTCTACTTGCTTTGCCCATTTCTACTTCC-GCCATATTGGCATTCTATGTTTGCCTTACCTCAAAGGTCGGCTTTCCTCAGTTTTAGATCTTAAATCTTTTTAAGCCAAAACTCCAAGGGAT-tttaacaaatatttattgaacccttcctgtgttcaaagaacattgtaaggtccagggtgggactaggggctgggaatggttcctgtgctgacagaacctaagatttagtaacagtgaaaaaaacagactttcagataactattgtggtttg----gaacgaaaggtacaaaatgttgaaagtc----aggaaac----tcttctaggacagtggttcccaacgttttaggcaccagggactggtttcatagaagacaatttttccatagacaagat----gggagggatgttttcgggatgattcaagcacgttatatttattgtggactttatttctattattacactgtaatgtataatcaaataattatacaacttaccataatgtagaatcagtaggaatcctgaacttgttttcctgcaactagacagtcccatctaggggtgatgggatatgctgacaggtcaccaggcattggattct
i cebCap1.NW_016107755v1   I 71 C 0
s aotNan1.NW_018496901v1     477439 596 -    486031 TTTCCTTCTCTACTTGCTCTGCCCATTTCTGCTTCC-GCCATATTGGCGTTCTACGTTTGCCTTACCTCAAAGGTCGGCTTTCCTCAGTTTTAGATCTGAAATCTTTTTAAGCCAAAACTCCAAGGGAT-Tttaacaaatatttactgaacccttcctatgttcaaagaacattttgaggtccagggtgggtctaggggccgagaatgattcctgtggtgacggaacctaagatttagtaacagtg-aaaaaacaGACTTACAGATAACTATTGTGTTTTT----GAAAGAAAGGTACAAAATGCTGAAAGTC----AGGAAAC----TCTTCTAGGAcagtggctcccaacgttttaggcaccagggaccggtttcatagaagacaatttttccacagacaagtt----gggagggatgttttcaggatgattcaagcgcgttatatttattgtggactttatttctattattacactgtaatgtataatgaaataattatacaactcaccatagtgtagaatcagtaggaatcctaagtttgttttcctgcaactagacagtcccatctaggggtgacgggatacactgacaggtcatcaggcattagattct
i aotNan1.NW_018496901v1   I 66 I 874
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e nomLeu3.chr1a            75291178 100 + 122973662 M

a score=616153.000000
s hg38.chr6_GL000254v2_alt  1840093 91 +   4827813 cataggagcgagcaacctagatccctcgcatgcacagttcacaataagattcacactcctatgagaatctaaccccactgctgatctgaca
s panTro5.chr6             30686861 91 + 175400573 cataggagcgagcaacctagatccctcgcatgcacagttcacaataaggttcacactcctatgagaatctaacgccactgctgatctgaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31110823 91 + 173848474 cataggagcgagcaacctagatccctcgcatgcacagttcacaataaggttcacactcctatgagaatctaacgccactgctgatctgaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     616153 91 +   2037526 cataggagcgagcaacctagatccctcgcatgcacagttcacaataaggttcacactcctatgagaatctaacgccactgctgatctgaca
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31209986 91 + 172585720 cataggagtgagcaacctagatccctcgcatgcacagttcacaataaggttcacactcccatgagaatctaatgccactgctgatctgaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30499444 91 - 170955103 cataggagtgagcaacctagatccctcgcatgcacagttcacaataaggttcacactcccatgagaatctaatgccactgctgatctgaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     783427 91 +   1495729 cataggagtgagcaacctagatccctcgcatgcacagttcacaatatggttcacactcccatgagaatctaatgccactgctgatctgaca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      16123 91 -    811324 cataggagtgagcaacctagatccctcacatgcacagttcacaataaggttcacactcccatgagaatctaatgccactgctgatctgaca
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30057128 91 -  71996105 cataggagtgagcaacttagatccctcgaatgcacagttcacaataaggttcacactcccatgagaatctaatgccactgctgatctgaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      50840 91 +    779361 cataggagtgagcaacctagatccctcacatgcacagttcacaataaggttcacactcccatgagaatctaatgccactgctgatctgaca
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     708460 91 -   1829203 cataggagcgagcaacctagatccctcgcatgcacagttcacaataaggttcacactcctatgagaacctaatgccactgcggatctgaca
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            38373 91 -    750284 cataggagtgagtaacctagatccctcacatgcacacttcacaataaggttcacactcttatgagaatctaatgccactgccagtctgaca
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1289303 91 -   1771730 catagaagtgagcaacctagatcccccgcatgtatacttcacaataaggttcacactcccataagaatctactgccactgccagtctgaca
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     478035 874 -    486031 I
e nomLeu3.chr1a            75291178 100 + 122973662 M

a score=1246636.000000
s hg38.chr6_GL000254v2_alt  1840184 170 +   4827813 ggaggcagagctcaggcgctaatgcttggtcacctgccactcacctcctactgtgcagcccagttcctaacaggccatggaccggtaccagtccatggcccagggcttgggaacccctgttttaggagacttaggt--ttttctaaaggaaaaaatgtttgagttatgcttt
s panTro5.chr6             30686952 170 + 175400573 ggaggcagagctcaggcgctaatgcttggtcgcctgccactcacctcctgctgtgcagcccagttcctaacaggccatggaccggtaccagtccatggcccaggggttgggaacccctgttttaggagacttaggt--ttttctaaaggaaaaaatgtttgagttatgcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31110914 170 + 173848474 ggaggcagagctcaggcgctaatgcttggtcgcctgccactcacctcctgctgtgcagcccagttcctaacaggccatggaccggtaccagtccatggcccaggggttgggaacccctgttttaggagacttaggt--ttttctaaaggaaaaaatgtttgagttatgcttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     616244 170 +   2037526 ggaggcagagctcaggcgctaatgcttggtcgcctgccactcacctcctgctgtgcagcccagttcctaacaggccatggaccggtaccagtccatggcccaggggttgggaacccctgttttaggagacttaggt--ttttctaaaggaaaaaatgtttgagttatgcttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75291278 169 + 122973662 ggaggcagagctcaggcgctaatgcttggtcgcctgccactcacctcctgctgtgcagcccagttactaacaggccatggaccggtaccagtccatggcccaggggttgggaa-cccTGTTTTAGGAGACTTAGGT--TTTTCTAAAGGAAAATATGTTTGAGTTATGCTTT
i nomLeu3.chr1a            M 100 C 0
s rheMac8.chr4             31210077 169 + 172585720 ggaggcagagctccggcgctaatgcttggtcgcctgccactcacctcctgctgggcggcccagttcctaacaggccgtggactgataccagtccatggcccaggggttgggaacccctgTTTTAGGAGACTTAGGT--TTTTCC-AAGGAAGAAATGTTTGAGTTATGCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30499535 169 - 170955103 ggaggcagagctccggcgctaatgcttggtcgcctgccactcacctcctgctgggcggcccagttcctaacaggccgtggactgataccagtccatggcccagggattgggaacccctgTTTTAGGAGACTTAGGT--TTTTCC-AAGGAAGAAATGTTTGAGTTATGCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     783518 169 +   1495729 ggaggcagagctcgggtgctaatgcttggtcgcctgccactcacctcctgctgggcggcccagttcctaacaggccgtggactgataccagtccatggcccaggggttgggaacccctgttttaggagacttcggt--ttttcc-aaggaagaaatgtttgagttatgcttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      16214 169 -    811324 ggaggcagagctcgggtgctaatgcttggtcgcctgccactcacctcctgctgcgcagcccagttcctaacaggccgtggactgataccagtccatggcccacgggttgggaacccctattttaggagacttcgga--ttttcc-aaggaagaaatgtttgagttatgcttt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30057219 169 -  71996105 ggaggcagagctcgggcgctaatgcttggtcgcctgccactcacctccttctgtgcggcccagttcctaacaggccgtggactgataccagtccatggcccaggggttgggaacccctattttaggagacttaggt--ttttcc-aaggaagaaatgtttgagttattcttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      50931 169 +    779361 ggaggcagagctcgggtgctaatgcttggtcgcctgccactcacctcctgctgcgcagcccagttcctaacaggccgtggactgataccagtccatggcccacgggttgggaacccctattttaggagacttcgga--ttttcc-aaggaagaaatgtttgagttatgcttt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     708551 169 -   1829203 ggaggcagagctcgggtgctaatgcttggtcgcctgccactcacctcctgctgtgtggcccagttcctaacaggccgtggactgataccagtccatggcccagggattgggaacccctgttttaggagacttaggt--ttttcc-aaggaagaaatgtttgagttatgcttt
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            38464 169 -    750284 ggaggcagagctcaggcggtcatgcttggtcacctgccactcacctcctgctgtgcggcccagttcctaacaggccacagactggtaacagtccacggcccaggggttggggatccct-TTTT-GGAGACCCAGGAAGGTTTAT-AAGGAAGCAATGTTTGAGTTATGCTTT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1289394 168 -   1771730 ggaggcagagctcaggtggtcatgcttggtcacctgccactta---cctgctgtgcagcccagttcttaacaggccacagaccagtatcagtacatggcccaggggttggggacccctgtttt-ggagacccaggaaggtttctaaaggaagaaatgtttgagttatgcttt
i cebCap1.NW_016107755v1   C 0 I 307
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     478035 874 -    486031 I

a score=10500.000000
s hg38.chr6_GL000254v2_alt  1840354 1 +   4827813 g
s panTro5.chr6             30687122 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31111084 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     616414 1 +   2037526 g
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75291447 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31210246 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30499704 1 - 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     783687 1 +   1495729 g
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      16383 1 -    811324 g
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30057388 1 -  71996105 g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      51100 1 +    779361 g
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     708720 1 -   1829203 g
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30874150 1 + 171630274 g
i calJac3.chr4             N 0 C 0
s saiBol1.JH378327            38633 1 -    750284 G
i saiBol1.JH378327         C 0 I 317
s cebCap1.NW_016107755v1    1289869 1 -   1771730 g
i cebCap1.NW_016107755v1   I 307 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     478035 874 -    486031 I

a score=9555.000000
s hg38.chr6_GL000254v2_alt  1840355 1 +   4827813 a
s panTro5.chr6             30687123 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31111085 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     616415 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75291448 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31210247 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30499705 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     783688 1 +   1495729 a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      16384 1 -    811324 a
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30057389 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      51101 1 +    779361 a
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     708721 1 -   1829203 a
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30874151 1 + 171630274 a
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            38951 1 -    750284 a
i saiBol1.JH378327         I 317 C 0
s cebCap1.NW_016107755v1    1289870 1 -   1771730 a
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     478035 874 -    486031 I

a score=2396064.000000
s hg38.chr6_GL000254v2_alt  1840356 253 +   4827813 aaaatgtaagaCACCACTGTAGATGTtttaatc-agggaattgggttattaccaaaaaaaaaatgttggaa-gatgaaagagcaggttctttatgcctcctggcttgaccctggaacaatttagaaccagcccAGTGAGGCATGTACTCCCCATGAGGCCACACAAGAGCTGTGCTTTCTTAGATCTGGATCCCACTACCACATAGGGGTTCCTGGGCACCTGGACACCAGGGAAGAGGGGTCAACCAGGTCCCA
s panTro5.chr6             30687124 252 + 175400573 aaaatgtaagaCACCACTGTAGATGTtttaatc-agggaattgggttattacc-gaaaaaaaatgttggaa-gatgaaagagcaggttctttatgcctcctggcttgaccctggaacaatttagaaccagcccAGTGAGGCACGTACTCCCCATGAGGCCACACAAGAGCTGTGCTTTCTTAGATCTGGATCCCACTACCACATAGGGGTTCCTGGGCACCTGGACACCAGGGAAGAGGGGTCAACCAGGTCCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31111086 252 + 173848474 aaaatgtaagaCACCACTGTAGATGTtttaatc-agggaattgggttattacc-gaaaaaaaatgttggaa-gatgaaagagcaggttctttatgcctcctggcttgaccctggaacaatttagaaccagcccAGTGAGGCACGTACTCCCCATGAGGCCACACAAGAGCTGTGCTTTCTTAGATCTGGATCCCACTACCACATAGGGGTTCCTGGGCACCTGGACACCAGGGAAGAGGGGTCAACCAGGTCCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     616416 252 +   2037526 aaaatgtaagaCACCACTGTAGATGTtttaatc-agggaattgggttattacc-gaaaaaaaatgttggaa-gatgaaagagcaggttctttatgcctcctggcttgaccctggaacaatttagaaccagcccAGTGAGGCATGTACTCCCCATGAGGCCACACAAGAGCTGTGCTTTCTTAGATCTGGATCCCACTACCACATAGGGGTTCCTGGGCACCTGGACTCCAGGGAAGAGGGGTCAACCAGGTCCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75291449 252 + 122973662 AAAACGTAAGACACCACTGTAGATGTtttaatc-agggaattgggttattact-gaaaaaaaatgttggaa-gatgaaagagcaggttctttatgcctcctggcttgaccctggaacaatttagaaccagcccAGTGAGGCACATACTCCCCATGAGGCCACACAAGAGCTGTGCTTTCTTAGATCTGGATCCCACTACCACATAGGGGTTCCTGGGCACCCGGACACCAGGGAAGAGGGGTCAACCAGGTCCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31210248 251 + 172585720 AAAATGTAAGACACCACTGTAGATGTtttaatc-agggaattgggttattacc---aaaaaaatgttggaaggatgaaagggtaggttctttatgcctgctgccttgaccctggaacaatttagaaccagcccagtgaggcacctactccctatgaggccacacaggaGCTGTGCTTTCTTAGACCTGGATCCCACTACCACATAGGGGTTCCTGGGCACCTGGACACCACGGAAGAGAGGTCAACCAGGTCCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30499706 251 - 170955103 AAAATGTAAGACACCACTGTAGATGTTTTAATC-AGGGAATTGGGTTATTACC---AAAAAAATGTTGGAAGGATGAAAGGGTAGGTTCTTTATGCCTGCTGCCTTGACCCTGGAACAATTTAGAACCAGCCCAGTGAGGCACCTACTCCCTATGAGGCCACACAGGAGCTGTGCTTTCTTAGACCTGGATCCCACTACCACATAGGGGTTCCTGGGCACCTGGACACCACGGAAGAGAGGTCAACCAGGTCCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     783689 251 +   1495729 aaaatgtaagaCACCACTGTAGATGTtttaatc-agggaattgggttattacc---aaaaaaatgttggaaggatgaaagggtgggttctttatgcctgctgccttgaccctggaacaatttagaaccagcccagtgaggcacctactccctatgaggccacacaggaGCTGTGCTTTCTTAGACCTGGATCCCACTACCACATAGGGCTTCCTGGGCACCTGGACACCACGGAAGAGAGGTCAACCAGGTCCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      16385 251 -    811324 aaaatgtaagaTACCACTGTAGATGTtttaatc-agggaattgggttattacc---aaaaaaatgttggaaggatgaaagggtgggttctttatgcctgctgccttgaccctggaacaatttagaaccagcccagtgaggcacctactccctatgaggccacacaggaGCTGTGCTTTCTTAGACCTGGATCCCACTACCACATAGGGGTTCCTGGGCACCTGGACACCACGGAAGAGAGGTCAACCAGGTCCCA
i cerAty1.NW_012002513v1   C 0 I 2035
s chlSab2.chr17            30057390 251 -  71996105 aaaatgtaagaCACCACTGTAGATGTTTTAATT-AGGGAATTGGGTTATTACC---AAAAAAATGTTGGAAGGATGAAAGAGTAGGTTCTTTATGCCTGCTGCCTTGACCCTGGAACAATTTAGAACCAGCCCAGTGAGGCACCTACTCCCTATGAGGCCACACAGGAGCTGTGCTTTCTTAGACCTGGATCCCACTACCACATAGGGGTTCCTGGGCACCTGGACACCATGGAAGAGAGGTCAACCAGGTCCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      51102 251 +    779361 aaaatgtaagaTACCACTGTAGATGTtttaatc-agggaattgggttattacc---aaaaaaatgttggaaggatgaaagggtgggttctttatgcctgctgccttgaccctggaacaatttagaaccagcccagtgaggcacctactccctatgaggccacacaggaGCTGTGCTTTCTTAGACCTGGATCCCACTACCACATAGGGGTTCCTGGGCACCTGGACACCACGGAAGAGAGGTCAACCAGGTCCCA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     708722 251 -   1829203 aaaatgtaagaCACCACTGTGGATGTtttaatc-agggaattgggttattacc---aagaaaatgttggaaggatgaaagagtgggttctttatgcctgctgctttgaccctggaacaatttagaaccagcctagtgaggcacctactccccatgaggccacacaggaGCTGTGCTTTCTTAGACCTGGATCCCACTACCACATAGGGGTTCCTGGGCACCTGGACACCATGGAAGAGAGGTCGACCAGGTCCTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30874152 232 + 171630274 aaaaTGTAAGACACCACTGTAGGTGTTTTAATCAAAGGAATGGGGTTACTACT---AAAAAGATGTTGGAAGGATG-AAGCGCAGGTTGCTTATGCCTCCTGGCTTGA-CCTGGAACAATTCAGAACCAG------------------CCCTGTGAGGCTACACAGGGACTGTGCTTTCTTACCTCTGGATCCCACTGCCCCACAGGGGCTTCTGGGCACCTGGACACCAGGAAAGAGAGGTCAAGCAGGTCCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            38952 252 -    750284 aaaaTGTAagacaccactataggtgttttaatcaaaggactagggttattact--aaaaaaaatgttggaaggatg-aagagcaggttgcttgtgcctcctggcttgaccctggaacaattgagaaccagcccagtgaggcacctactccccgtgaggctacacaggaaCTGTGCTTTCTTACCTCTGGATCCCACTGCCACATAGGGGCTTCTGGGCACCTGGACACGAGGGAAGAGAGGTCAAGCAGGTCCCA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1289871 251 -   1771730 aaaaTGTAAGACACCACTGTAGGTGTTTTAATCAAAGGAATAGGGTTATATCT-AAAAAAAAACGTTGGAAGGATA-AAGAGCAGGTTGCTTATGCCTCCTGGCTTGACCCTGGAACAATTCAGAA--AGCCCAGTGAGGCACCTACTCCCCGTGAGGCCACACAGGAGCTGTGCTTTCTCACGTCTGGATCTCACTGCCACATAGGGGTTTCTGGTCACCTGGACACCAAGGAAGAGAGGTCAAGCAGGTCCCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     478909 250 -    486031 aaaaTATAagacaccactgtaggtgttttaatcaaaggaatagggttactact---aaaaaaatgttggaaggatg-aagagcaggttgcttatgcttcctggcttgaccctggaacaattgagaaccagcccagtgaggcacctactccccgtgaggccacacaggaaCTGTGCTTTCTTACATCTGGATCCCACTGCCACGTAGGGGTTTCTGGGCACCTGGACACCAGGGAAGAGAGGTCAAGCGGGT-CCA
i aotNan1.NW_018496901v1   I 874 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I

a score=708629.000000
s hg38.chr6_GL000254v2_alt  1840609 94 +   4827813 CTCCTCTGGCATGACACTCAGTGATTCAGTCAAGATACTGTTGGGAAAACAGCCCATGCCATGGGACTTCCCCATGGTCGGAAAAGTCTTGAAT
s panTro5.chr6             30687376 94 + 175400573 CTCCTCTGGCATGACACTCAGTGATTCAGTCAAGATACTGTTGGGAAAACAGCCCATGCCACGGGACTTCTCCATGGTCGGAAAAGTCTTGAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31111338 94 + 173848474 CTCCTCTGGCATGACACTCAGTGATTCAGTCAAGATACTGTTGGGAAAACAGCCCATGCCACGGGACTTCTCCATGGTCGGAAAAGTCTTGAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     616668 94 +   2037526 CTCCTCTGGCATGACACTCAGTGATTCAGTCAAGATACTGTTGGGAAAACAGCCCATGCCACGGGACTTCTCCATGGTCAGAAAAGTCTTGAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75291701 93 + 122973662 CTCCTCTAGCATGACACTCAGTGATTCAGTCAAGATACTGTTGGG-AAACAGCCCATGCCACAGGACTTCTCCATGGTCGGAAAAGTCTTGAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31210499 94 + 172585720 CTCCTCTGGCATGACACTCAGTGATTCAGTCAAGATACTGTTGGGAAAACAGCCCATGCCACAGGACTTCTCCATGGTTGGAAAAGTCTTGAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30499957 94 - 170955103 CTCCTCTGGCATGACACTCAGTGATTCAGTCAAGATACTGTTGGGAAAACAGCCCATGCCACAGGACTTCTCCATGGTTGGAAAAGTCTTGAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     783940 94 +   1495729 CTCCTCTGGCATGACACTCAGTGATTCAGTCAGGATACTGTTGGGAAAACAGCCCATGCCACAGGACTTCTCCATGGTTGGAAAAGTCTTGAAT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30057641 94 -  71996105 CTCCTCTGGCATGACACTCAGTGATTCAGTCAAGATACTGTTGGGAAAACAGCCCATGCCACAGGACTTCTCCATGGTTGGAAAAGTCTTGAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      51353 87 +    779361 TTCCTCTGGCATGACACTCAGTGATTCAGTCAAGATACTGTTGGGAAAACAGCCCATGCCA-------TCTCCATGGTTGGAAAAGTTTTGAAT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     708973 94 -   1829203 CTCCTCTGGCATTACACTCAGTGATTCAGTCAAGATACTGTTGGGAAAACAGCCCATGCCACAGGACTTCTCCATGGTTGGAAAAGTCTTGAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30874384 82 + 171630274 CTCCTCTGGCATTATATCCAGTGATTCAGTTAATAAACTGTTGGGAATAC------------GTGAATTTTCCATGATTGGAAAAGTCTTGAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            39204 81 -    750284 CTCCTCTGGCATTACACCCAGTGATTCAGTCAATATACTGTTGGGAAAAC------------GTGACTTTTCCGTGATTAG-TTAGTCTTGAAT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1290122 82 -   1771730 CTCCTCTGGCATTACACCCAGTGATTGAGTCAATATACTGTCGGGAAAAC------------ATGGCTTTTCCATGATTGGAAAAGTCTTGAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     479159 82 -    486031 CTCCTCTGGCATTACACCCAGTGATTCAGTTAATACACTGTTGGGAAAAC------------GTGACTTTTGCATGATTGGAAAAGTCTTGAAT
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e cerAty1.NW_012002513v1      16636 2035 -    811324 I

a score=1623656.000000
s hg38.chr6_GL000254v2_alt  1840703 165 +   4827813 AGCTAAAAGC-AAAACAGGATAGTTAGGCTGCATTATGTAGATAATGGTGA---CTCAT-GGGCA---------------GGCCCTGCCTCCTTGGGCCATTGTATGTGAACAGATCTTTGTGTGATTATGGGA-TAATTCTGGGTT-CTTTTCTCCATGTGCCTGTTCTTAATTGGCCCAGGAGAG
s panTro5.chr6             30687470 165 + 175400573 AGCTAAAAGC-AAAACAGGATAGTTAGGCTGCATTATGTAGATAATGGTGA---CTCAT-GGGCA---------------GGCCCTGCCTCCTTGGGCCATCGTATGTGAACAGATCTTTGTGTGATTATGGGA-TAATTCTGGGTT-CTTTTCTCCATGTGCCTGTTCTTAATTGGCCCAGGAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31111432 165 + 173848474 AGCTAAAAGC-AAAACAGGATAGTTAGGCTGCATTATGTAGATAATGGTGA---CTCAT-GGGCA---------------GGCCCTGCCTCCTTGGGCCATCGTATGTGAACAGATCTTTGTGTGATTATGGGA-TAATTCTGGGTT-CTTTTCTCCATGTGCCTGTTCTTAATTGGCCCAGGAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     616762 165 +   2037526 AGCTAAAAGC-AAAACAGGATAGTTAGGCTGCATTATGTAGATAATGGTGA---CTCAT-GGGCA---------------GGCCCTGCCTCCTTGGGCCATCGTATGTGAACAGATCTTTGTGTGATTATGGGA-TAATTCTGGGTT-CTTTTCTCCATGTGCCTGTTCTTAATTGGCCCAGGAGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75291794 164 + 122973662 AGCTAAAAGC-AAAACAGGATAGTTAGGCTGCATTATGTAGGTAATGGTGA---CCCAT-GGGCA---------------GGCCCTGCCTCCTTGGGCCATCATATGTGAACAGATCTTTGTGTGATTATGGGA-TAATTCTGGGTT-CTTTTCTCTATGTGCCTGTTATTAA-TGGCCCAGGAGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31210593 165 + 172585720 AGCTAAAAGC-AAAACAGGATAGTTAGGCTGCATTATGTAGATAAAGGTGA---CTCAT-GGGCA---------------GGCCCTGCCTCCTTGGGCCATCGTATGTGAACAGATCTTTGTGTGATTATGGGA-TAATCCTGGGTT-TCTTTCTCCATGTGCCTGTTCTTAATTGGCCCAGGAGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30500051 165 - 170955103 AGCTAAAAGC-AAAACAGGATAGTTAGGCTGCATTATGTAGATAAAGGTGA---CTCAT-GGGCA---------------GGCCCTGCCTCCTTGGGCCATCGTATGTGAACAGATCTTTGTGTGATTATGGGA-TAATCCTGGGTT-TCTTTCTCCATGTGCCTGTTCTTAATTGGCCCAGGAGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     784034 165 +   1495729 AGCTAAAAGC-AAAACAGGATAGTTAGGCTGCATTATGTAGATAAAGGTGA---CTCAT-GGGCA---------------GGCCCTGCCTCCTTGGGCCATCGTATGTGAACAGATCTTTGTGTGATTATGGGA-TAATCCTGGGTT-CCTTTCTCCATGTGCCTGTTCTTAATTGGCCCAGGAGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      18671 170 -    811324 AGCTAAAAGCAAAAACAGGATAGTTAGGCTG-ATTATGTAGATAAAGGTGGGACTCCATGGGGCA---------------GGCCCTG-CTCCTTGGGGCATCGTATGTGAACAGATTCTTTTGTGATTATGGGATTAATCCTGGGTTCCCTTTCTCCATGTGCCTGTTCTTAATTGGCCCAGGAGAG
i cerAty1.NW_012002513v1   I 2035 C 0
s chlSab2.chr17            30057735 165 -  71996105 AGCTAAAAGC-AAAACAGGATAGTTAGGCTGCATTATGTAGATAAAGGTGA---CTCAT-GGGCA---------------GGCCCTGCCTCCTTGGGCCATCGTATGTGAACAGATCTTTGTGTGATTATGGGA-TAATCCTGGGTT-CCTTTCTCCATGTGCCTGTTCTTAATTGGCCCAGGAGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      51440 165 +    779361 AGCTAAAAGC-AAAACAGGATAGTTAGGCTGCATTATGTAGATAAAGGTGA---CTCAT-GGGCA---------------GGCCCTGCCTCCTTGGGCCATCGTATGTGAACAGATCTTTGTGTGATTATGGGA-TAATCCTGGGTT-CCTTTCTCCATGTGCCTGTTCTTAATTGGCCCAGGAGAG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     709067 165 -   1829203 AGCTAAAAGC-AAAACAGGATAGTTAGGCTGCATTATGTAGATAAAGGTGA---CTCAT-GGGCA---------------GGCCCTGCCTCCTTGGGCCATCGTATGTGAACAGATCTTTGTGTGATTATGGGA-TAATCCTGGGTT-CCTTTCTCCATGTGCCTGTTCTTAATTGGCCCAGGAGTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30874466 177 + 171630274 AGCTAAAAGC-AAAACAGGATAGTTAGGCTGCGTTAT---GATAATGGTGA---GTCAT-GGGCAGGCCCTACCACCTTGGGCCCTACCACCTTGGGCCATCGTATGTACACAGATCTTTGTGTGATTATGGCA-TAACCCTGGGTT-CCTTTCTCCATGTTCCTGTTCTTAATTGGCCCAGGAGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            39285 160 -    750284 AGCTAAAAGC-AGAACAGGATAGTTAGGCTGCATTACGTAGATAATGGTGA---GTCAT-GGTCA---------------GGTCCCACCTCCTTGGGCCATCGTAGGTGGACAGACCTT----TGATTATGGCA-TAACCCT-GGTT-CCTTTCTCCAAGTGCCTGTTCTTAATTTGCCCAGGAGAG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1290204 165 -   1771730 AGCTAAAAGC-AGAACAGGATAGTTGGGCTGCATTATGTAGATAATGGTGA---GTCAT-AGGCA---------------GGCCCCACCTCCTTGGGCCATCATATGTGGACAGATCTTCATGTGATTATGGCA-TAACTCTGGGTT-CCTTTCTCCATGTGCCTGTTCTTAATTGGCCCAGGAGAG
i cebCap1.NW_016107755v1   C 0 I 504
s aotNan1.NW_018496901v1     479241 165 -    486031 AGCTaaaagc-agaacaggatagttaggctgcattatgtagataatggtga---gtcat-GGGCG---------------GGCCCCACCTCCTTGGGCCGTCATATGTGGACAGATCTTTGTGTGATTATGGCA-TAACCCTGGGTT-CCTTTCTCCATGTGCCTGTTCTTAATTGGCCCAAGAGAG
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I

a score=192832.000000
s hg38.chr6_GL000254v2_alt  1840868 23 +   4827813 GG--AACCCAAGGGAAGGAGGAACC
s panTro5.chr6             30687635 23 + 175400573 GG--AACCCAAGGGAAGGAGGAACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31111597 23 + 173848474 GG--AACCCAAGGGAAGGAGGAACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     616927 23 +   2037526 GG--AACCCAAGGGAAGGAGGAACC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75291958 23 + 122973662 GG--AACCCAAGGGAAGGAGGAACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31210758 23 + 172585720 GG--AACTCAGGGAAAGGAGGAACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30500216 23 - 170955103 GG--AACTCAGGGAAAGGAGGAACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     784199 23 +   1495729 GG--AACTCAAGGAAAGGAGGAACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      18841 25 -    811324 GGGAAACTCAAGGAAAGGAGGAACC
i cerAty1.NW_012002513v1   C 0 I 1
s chlSab2.chr17            30057900 23 -  71996105 GG--AACTCAAGGAAAGGAGGAACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      51605 23 +    779361 GG--AACTCAAGGAAAGGAGGAACC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     709232 23 -   1829203 GG--AACTCAGGGAAAGGAGGAACC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30874643 23 + 171630274 GT--AACCCAAGGGAAAGAGGAACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            39445 23 -    750284 GT--AACCCAAGGGAAAGAGGAACC
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018496901v1     479406 23 -    486031 GT--AACCCAAGGGAAAGAGGAACC
i aotNan1.NW_018496901v1   C 0 I 314
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e cebCap1.NW_016107755v1    1290369 504 -   1771730 I

a score=62794.000000
s hg38.chr6_GL000254v2_alt  1840891 10 +   4827813 CGAGTGATCT
s panTro5.chr6             30687658 10 + 175400573 CAAGTGATCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31111620 10 + 173848474 CAAGTGATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     616950 10 +   2037526 CAAGTGATCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75291981 10 + 122973662 TGAGTGATCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31210781 10 + 172585720 TGAGTGATCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30500239 10 - 170955103 TGAGTGATCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     784222 10 +   1495729 TGAGTGATCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      18867 10 -    811324 TGAGTGATCT
i cerAty1.NW_012002513v1   I 1 C 0
s chlSab2.chr17            30057923 10 -  71996105 TGAGTGATCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      51628 10 +    779361 TGAGTGATCT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     709255 10 -   1829203 TGAGTGATCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30874666 10 + 171630274 TGAATTATTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            39468 10 -    750284 TGAATTAttt
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     479429 314 -    486031 I
e cebCap1.NW_016107755v1    1290369 504 -   1771730 I

a score=60498.000000
s hg38.chr6_GL000254v2_alt  1840901  8 +   4827813 TGT--CCTCT
s panTro5.chr6             30687668  8 + 175400573 TGT--CCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31111630  8 + 173848474 TGT--CCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     616960  8 +   2037526 TGT--CCTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75291991  8 + 122973662 TGT--CCTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31210791  8 + 172585720 TGT--CCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30500249  8 - 170955103 TGT--CCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     784232  8 +   1495729 TGT--CCTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      18877 10 -    811324 TGTTCCTCTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30057933  8 -  71996105 TGT--CCTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      51638  8 +    779361 TGT--CCTCT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     709265  8 -   1829203 CGT--CCTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30874676  8 + 171630274 CAT--Cttct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            39478  8 -    750284 tgt--cttct
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018496901v1     479743  8 -    486031 TGT--CCTCT
i aotNan1.NW_018496901v1   I 314 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e cebCap1.NW_016107755v1    1290369 504 -   1771730 I

a score=32760.000000
s hg38.chr6_GL000254v2_alt  1840909 3 +   4827813 TTT
s panTro5.chr6             30687676 3 + 175400573 TTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31111638 3 + 173848474 TTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     616968 3 +   2037526 TTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75291999 3 + 122973662 TTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31210799 3 + 172585720 TTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30500257 3 - 170955103 TTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     784240 3 +   1495729 TTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      18887 3 -    811324 TTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30057941 3 -  71996105 TTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      51646 3 +    779361 TTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     709273 3 -   1829203 TTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30874684 3 + 171630274 ttt
i calJac3.chr4             C 0 I 309
s saiBol1.JH378327            39486 3 -    750284 ttt
i saiBol1.JH378327         C 0 I 305
s cebCap1.NW_016107755v1    1290873 3 -   1771730 TTT
i cebCap1.NW_016107755v1   I 504 C 0
s aotNan1.NW_018496901v1     479751 3 -    486031 TTT
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I

a score=228931.000000
s hg38.chr6_GL000254v2_alt  1840912 23 +   4827813 GACATCTCATTTCTAGCCACAAG
s panTro5.chr6             30687679 23 + 175400573 GACATCTCATTTCTAGCCACAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31111641 23 + 173848474 GACATCTCATTTCTAGCCACAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     616971 23 +   2037526 GACATCTCATTTCTAGCCACAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75292002 23 + 122973662 GACATCTCATTTCTAGCCACAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31210802 23 + 172585720 GACATCTCATTTCTAGCCACAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30500260 23 - 170955103 GACATCTCATTTCTAGCCACAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     784243 23 +   1495729 GACATCTCATTTCTAGCCACAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      18890 23 -    811324 GACATCTCATGTCTAGCCACAAG
i cerAty1.NW_012002513v1   C 0 I 28
s chlSab2.chr17            30057944 23 -  71996105 GACATCTCATTTCTAGCCACAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      51649 23 +    779361 GACATCTCATGTCTAGCCACAAG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     709276 23 -   1829203 GACATCTCATTTCTAGCCACAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30874996 23 + 171630274 GACATTGCATTTCTAGCCACAAT
i calJac3.chr4             I 309 C 0
s saiBol1.JH378327            39794 23 -    750284 GACATCGCATTTATAGCCACAAG
i saiBol1.JH378327         I 305 C 0
s cebCap1.NW_016107755v1    1290876 23 -   1771730 GACATCCCATTTCTAGCCACAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     479754 22 -    486031 GACATTGCATTTCTAGCCACAA-
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I

a score=918805.000000
s hg38.chr6_GL000254v2_alt  1840935 112 +   4827813 GTTATGAATCATAGATCTCCAGAAGTCAGTGGTCCTAGAGGAAAAAAGC-ATCTGCCATAGCAGCAGAATGACAGGGAGACAGCTATTCCTATTACTAGAGTTTTAACAGCCC
s panTro5.chr6             30687702 112 + 175400573 GTTATGAATCGTAGATCTCCAGAAGTCAGTGGTCCTAGAGGAAAAAAGC-ATCTGCCATAGCAGCAGAATGACAGGGAGACAGCTATTCCTATTACTAGAGTTTTAACAGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31111664 112 + 173848474 GTTATGAATCGTAGATCTCCAGAAGTCAGTGGTCCTAGAGGAAAAAAGC-ATCTGCCATAGCAGCAGAATGACAGGGAGACAGCTATTCCTATTACTAGAGTTTTAACAGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     616994 112 +   2037526 GTTATGAATCGTAGATCTCCAGAAGTCAGTGGTCCTAGAGGAAAAAAGC-ATCTGCCATAGCAGCAGAATGACAGGGAGACAGCTATTCCTATTACTAGAGTTTTAACAGCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75292025 112 + 122973662 GTTATGAATCATAGATCTCCAGAAGTCAGTGGTCCTAGAGGAAAAAAGC-ATCTGCCATAGCAGCAGAATGAAAGGGAGACAGCTATTCCTATTACTAGAGTTTTAACAGCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31210825 112 + 172585720 ACTATGAATCATAGATCTCTAGATGTCAGTGTTCCTAGAGGAAAAAAGCAATCTGCCATAGCAGCAGAATGAAAGGGAGACAGCTACTCCTATTACTACA-TTTTAACAGCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30500283 112 - 170955103 ATTATGAATCATAGATCTCTAGATGTCAGTGTTCCTAGAGGAAAAAAGCAATCTGCCATAGCAGCAGAATGAAAGGGAGACAGCTACTCCTATTACTACA-TTTTAACAGCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     784266 112 +   1495729 ATTATGAATCATAGATCTCTAGATGTCAGTGTTCCTAGAGGAAAAAAGCAATCTGCCATAGCAGCATAATGAAAGGGAGACAGCTACTCCTATTACTACA-TTTTAACAGCCC
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30057967 111 -  71996105 ATTATGAATCATAGATCTCTAGATGTCAGTGTTCCTAGAGGAAAAAAGC-ATCTGCCATAGCAGCAGAATGAAAGGGAGACAGCTACTCCTATTACTACA-TTTTAACAGCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      51672 112 +    779361 ATTATGAATCATAGATCTCTAGATGTCAGTGTTCCTAGAGGAAAAAAGCAATCTGCCATAGCAGCAGAATGAAAGGGAGACAGCTACTCCTATTACTACA-TTTTAACAGCCC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     709299 113 -   1829203 ATTATGAATCATAGATCTCTAGATGTCAGTGTTCCTAGAGGAAAAAAGCAATCTGCCATAGCAGCAGAATGAAAGGGAGACAGCTACTCCTATTACTACAGTTTTAACAGCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30875019 112 + 171630274 GTTATGAATCATAGATCTCCAGAAGTCAGTGGTCCTAGAGGAAAAAAGT-ATCTGCAATAGCAGGAGAAGGAAAGGGAGACAGCTGTTCTTATTACTAGACTTTTAACAACCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            39817 112 -    750284 GTTATGAATCATAGATCTCCAGAAGTCAGTGGTCCTAGAGGAAAAAAGC-ATCTGCCACAGCAGGAGAAGGAAAGGGAGACAGCTGTTCCTATTACTAGACATTTAACAACCC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1290899 112 -   1771730 GTTAGGAATCATTGATCTCCAGAAGTCAGTGGTCCTAGAGGAAAAAAGG-ATCTGCCATAGCAGGAGAAGGAAAGGGAGACGGCTGTTCCTATTACTAGAGTTTTAACAACAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     479776 109 -    486031 GTTATGAATCATAGATCTCCAGAAGTCAGTGGTCCTAGAGGAAAAAAGC-ATCTGCCATAGT---AGAAGGAAAGGGAGACAGCTGTTCCTATTACTAGACTTTTAACAACCC
i aotNan1.NW_018496901v1   C 0 I 22
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e cerAty1.NW_012002513v1      18913  28 -    811324 I

a score=33059.000000
s hg38.chr6_GL000254v2_alt  1841047 4 +   4827813 CTCT
s panTro5.chr6             30687814 4 + 175400573 CTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31111776 4 + 173848474 CTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     617106 4 +   2037526 CTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75292137 4 + 122973662 CTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31210937 4 + 172585720 CTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30500395 4 - 170955103 CTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     784378 4 +   1495729 CTCT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30058078 4 -  71996105 CTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      51784 4 +    779361 CTCT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     709412 4 -   1829203 CTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30875131 4 + 171630274 CTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            39929 4 -    750284 CTCT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1291011 4 -   1771730 CTCT
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     479885 22 -    486031 I
e cerAty1.NW_012002513v1      18913 28 -    811324 I

a score=3401725.000000
s hg38.chr6_GL000254v2_alt  1841051 406 +   4827813 CAGCCAGCTAGCCCAGACTAGGATCTTAACGGGGGCTGGGACTTACTTCCATATATTGTAAATGATGTAACCTTGTCTTCATGATGACCTTAAATATATC-TTGATGAACAGTATAAGAAAGCAAATGAAGCctgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggttgatcacctgaggttgggagttcaagaccagcctgaccaacacggagaaaccctgtctctactaaaaataaaaaattagctgggcgtggtggcgcatgcctgtaatcctagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggctgaggttgtgcagtgagccaagatcacaccattgcactccagcctgagcaagaagagtgaaact
s panTro5.chr6             30687818 406 + 175400573 CAGCCAGCTAGCCCAGACTAGGATCTTAACGGGGGCTGGGACTTACTTCCATATATTGTAAATGATGTAACCTTGTCTTCATGCTGACCTTAAATATATC-TTGATGAACAGTATaagaaagcaaatgaagcctgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggttgatcacctgaggttgggagttcaagaccagcctgaccaacatgcagaaaccctgtctctactaaaaataaaaaattagctgggcgtggtggcacatccctgtaatcctagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggctgaggttgcgcagtgagccaagatcacaccgtcgcactccagcctgggcaacaagagcgaaact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31111780 406 + 173848474 CAGCCAGCTAGCCCAGACTAGGATCTTAACGGGTGCTGGGACTTACTTCCATATATTGTAAATGATGTAACCTTGTCTTCATGCTGACCTTAAATATATC-TTGATGAACAGTATaagaaagcaaatgaagcctgggtgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggttgatcacctgaggttgggagttcaagaccagcctgaccaacatgcagaaaccctgtctctactaaaaataaaaaattagctgggcgtggtggcacatccctgtaatcctagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggctgaggttgcgcagtgagccaagatcacaccgtcgcactccagcctgggcaacaagagcgaaact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     617110 406 +   2037526 CAGCCAGCTAGCCCAGACTAGGATCTTAACGGGGGCTGGGACTTACTTCCATATATTGTAAATGATGTAACCTTGTCTTCATGCTGACCTTAAATATATC-TTGATGAACAGTATaagaaagcaaatgaagcctgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggttgatcacctgaggttgggagttcaagaccagcctgaccaacatggagaaaccctgtctctactaaaaataaaaaattagctgggcgtggtggcacatccctgtaatcctagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggctgaggttgcacagtgagccaagatcacaccatcgcactccagcctgggcaacaagagcgaaact
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75292141 406 + 122973662 CAGCCAGCTAGCCTAGACTAGGATCTTAAAGGGGTCTGGGACTTACTTCCATGTATTGTAAATGATGTAACCTTGTCTTCATGCTGACCTTAAATATATC-TTCATGAACAGTGTAAGAAAGCAAATGAAggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggctgatcacctgaggtcgggagttcaagaccagcctgaccaacatggagaaaccctgtctctactaaaaataaaaaattagctgggcgtagtggcgcatgcccgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggctgaggttgtgcagtgagccgagatcacaccattgcactccagcctgggcaacaagagtgaaact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31210941 406 + 172585720 CAGTCAGCTAGCCCAGACTAGGATCTTAATGGGGACTGGGACTTACTTCCATATATTGTAAATGATGTAACCTTGTCTTCATGCTGATCTTAAATATATC-TTGATGAACAGTATAAGGaagcaaatgaaggcttggcgcggtggctcacgcctgtaatcccagcactttgggaagccaaggtgggtggatcacctgaggtcgggagttcgagatcagcctgaccaacatggagaaaccccgtctctaccaaaaatacaaaattagctgggtgtggtagcacatgcctgtaatcctagctactcaggaggccgaggcaggagaatcgcttgaatccaggaggcggaggttgcgcagtgagccgagatcacaccattgcactccagcctgggcaacaagagcgaaact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30500399 406 - 170955103 CAGTCAGCTAGCCCAGACTAGGATCTTAATGGGGACTGGGACTTACTTCCATATATTGTAAATGATGTAACCTTGTCTTCATGCTGATCTTAAATATATC-TTGATGAACAGTATAAGGaagcaaatgaaggcttggcgcggtggctcacacctgtaatcccagcactttgggaagccaaagtgggtggatcatctgaggtcgggagttcgagatcagcctgaccaacatggagaaaccccgtctctaccaaaaatacaaaattagctgggtgtggtagcacatgcctgtaatcctagctactcaggaggccgaggcaggagaattgcttgaatccaggaggcggaggttgcgcagtgagccgagatcacaccattgcactccagcctgggcaacaagagcgaaact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     784382 406 +   1495729 CAGTCAGCTAGCCCAGACTAGGATCTTAATGGGGACTGGGACTTACTTCCATATATCGTAAATGATGTAACCTTGTCTTCATGCTGATCTTAAATATATC-TTGATGAACAGTATAAGGaagcaaatgaaggcttggcgcggtggctcacgcctgtaatcccagcactttgggaagccaaggtgggtggatcacctgaggtcgggagttcgagatcagcctgaccaacatggagaaaccccgtctctaccaaaaatacaaaattagctgggtgtggtagcacatgcctgtaatcctagctactcaggaggccgaggcaggagaatcgcttgaatccaggaggcggaggttgcgcagtgagccgagatcacaccattgcactccagcctgggcaacaagagcgaaact
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30058082 406 -  71996105 CAGGCAGCTAGCCCAGACTAGGATCTTAATGGGGACTGGGACTTACTTCCATATATTGTAAATGATGTAACCTTGTCTTCATGCTGATCTTAAATATATC-TTGATGAACAGTATAAGGAAGCAAATGAAggcttggcgcggtggctcacgcctgtaatcccagcactttgggaagccaaggtgggtggatcacctgaggtcgggagttcgagatcagcctgaccaacatgaagaaaccccatctctaccaaaaatacaaaattagctgggtgtggtagcacatgcctgtaatcctagctactcaggaggccgaggcaggagaattgcttgaacccaggaggcggaggttgcgcagtgagctgagatcacaccattgtactccagcctgggcaacaagagtgaaact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      51788 406 +    779361 CAGTCAGCTAGCCCAGACTAGGATCTTAATGGGGACTGGGACTTACTTCCATATATTGTAAATGATGTAACCTTGTCTTCATGCTGATCTTAAATATATC-TTGATGAACAGTATAAGGAAGCAAATGAAggcttggcgcagtggctcacgcctgtaatcccagcactttgggaagccaaggtgggtggatcacctgaggtcaggagttcgagatcagcctgaccaacatggagaaaccccgtctctaccgaaaatacaaaattagctgcgtgtggtagcacatgcctgtaatcctagctactcaggaggccgaggcaggagaatcgcttgaacccaggaggcggaggttgcgcagtgagccgagatcacaccattgcactccagcctgggcaacaagagcgaaact
i manLeu1.NW_012106264v1   C 0 I 218
s colAng1.NW_012115577v1     709416 406 -   1829203 CAGTCAGCTAGCCCAAACTAGGATCTTAATGGGGACTGGGACTTACTTCCATATATTGTAAATGATGTAACCTTGTCTTCATGCTGATCTTAAATATATC-TTGATGAACAGTATAAGGAAGCAAATGAAggcttggcacagtggctcacgcctgtaatcccagcactttgggagaccaaggtgggtggatcacctgaggtcgggagttcgagatcagcctgaccaacgtggagaaaccctgtctctaccgaaaatacaaaattagctgggtgtggtagcacatgcctgtaatcctagttattcaggaggccgaggcaggagaatcgcttgaacccaggaggcggaggttgcgcagtgagccgagatcacaccattgcactccagcctgggcaacaagagcgaaact
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30875135 405 + 171630274 AGGTCAGCTAGCCCAGACTCGAATCTCAACTGGGGCTGGGACTTACTTTCAAATATTGTAAATGATGTAACCTTGTATTCATGCTGATCttaaatatatctttgatgaacagtgcaagaaagcaaatgaaggcagggtgcagtggctcacacctgcaatcccagcactttgggaggccaaggtgggtgaattgcctgaggtcaggagtttgagaccagcctgaccaacatggagaaatgccatctctactaaaaatacaaaattagctgggcatggtggcacatgcctgtcatcccagctactccagaggctgaagcggaagaatcacttgaacccaacaggcagaggttgtg--gtgagccaagatcgcactattgcactccagcctgggcaacaaaggtgaaact
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            39933 403 -    750284 AGGTCAGCTAGCCCAGACTGGAATCTCAACTGGGGCTGGGACTTACTTTCAAATATTGTAAATGATGTAACCTTGTATTCATGCTGATCTTAAATACATCTTTGATGAACAGTGCAAGAAAGCAAATGAAGACAgggtgcagtggctcacacctgtaatcccagaactttgggaggccgaggcaggcaaatcacctgaggtcgggagttt-agaccagcttgaccaccatggagaaatgccatctctactaaaaatacaaaattagctgggcatggtggcacatgcctgtcaacccagctactccagaggctgaggcagaagtatcacttgaacccaaca-gcagaggttgtg--gtgagccgagatcgcaccattgcactccagcctgggcaacatcagtgaaact
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1291015 405 -   1771730 AGGTCAGCTAGCCCAGACTGGAATCTCAACTGGGGCTGGGACTTACTTTCAAATATGCTAAATGATGTAACCTTGTATTCATGCTGATCTTAAATATATCTTTGATGAACAGTGCAAGAAAGCAAATGAAggcagggtgcggtggctcacacctgtaatcccagcactttgggaggctgagacgggtgaatcacctgaggtcgggagtttgagaccagcctaaccaacgtggagaaatgccacctctactaaaaatacaaaattagctgggcgtggtggcacatgcctgtaatcccagctattccactggctagggcggaagaatcacttgaacccaacaggtggagattgtg--gtgagccaagatcacactgttgcattccagcctaggcaacaagggtgaaact
i cebCap1.NW_016107755v1   C 0 I 19
s aotNan1.NW_018496901v1     479907 404 -    486031 TAGACAGCTAGCCCAGACTGGAATCTCAACTGGGGCTGGGACTTATTTTCAAATATTGTAAGTGATATAACCTTGTATTCATGCTGATCATAAATACATCTTTGATGAACAGTGCAAGAAAGCAAATGTAggcagggtgcagtggctgacacctgtaatcccagcactttgggaggtcgaggcgggcgaatcacctgaggttaggagtttgagatcagcctga-caacatggagaaatgccatctctactaaaaatacaaaattagctgggcgtggtggcacatgcctgtaatcccagttactccagaggctgaggcagaagaatcacttgaaccaaagaggcagagattgtg--gtgagccaagatcgcactattgcactccagcctgggcaacatgggtgaaact
i aotNan1.NW_018496901v1   I 22 I 12
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e cerAty1.NW_012002513v1      18913  28 -    811324 I

a score=20719.000000
s hg38.chr6_GL000254v2_alt  1841457 16 +   4827813 gcgcttcgaaaagaaa
s panTro5.chr6             30688224 16 + 175400573 gcacttcgaaaagaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31112186 16 + 173848474 gcacttcgaaagaaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     617516 16 +   2037526 gcgcttcgaaaagaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75292547 16 + 122973662 gcgcttcaaaaagaaa
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30875540 16 + 171630274 ctgtctcaaaaaaaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            40336 16 -    750284 gtgtctcaaaaaaaaa
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     480311 12 -    486031 I
e cebCap1.NW_016107755v1    1291420 19 -   1771730 I
e colAng1.NW_012115577v1     709822  0 -   1829203 C
e manLeu1.NW_012106264v1      52194 218 +    779361 I
e chlSab2.chr17            30058488  0 -  71996105 C
e cerAty1.NW_012002513v1      18913 28 -    811324 I
e macNem1.NW_012012100v1     784788  0 +   1495729 C
e macFas5.chr4             30500805  0 - 170955103 C
e rheMac8.chr4             31211347  0 + 172585720 C

a score=24574.000000
s hg38.chr6_GL000254v2_alt  1841473 110 +   4827813 gaaagagag----------agagggagggagggaggaaggaaggaaggagagaga-----------aagaaagaaagagagagagaaagaaagaaaggaaa---------gaaggaaaga--------------------------aggaaagaaaggaagaaagg
s panTro5.chr6             30688240 129 + 175400573 gagagagag----------ggagggagggaggaaggaaggaaggagagagagagagagaaagaaagaagaaagaaagagagagagaaagaaagaaaggaaag-aaggaaggaaggaaaga--------------------------aggaaagaaaggaagaaagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31112202 126 + 173848474 gagagag-------------gagggagggaggaaggaaggaaggagagagagagagagaaagaaagaagaaagaaagagagagagaaagaaagaaaggaaag-aaggaaggaaggaaaga--------------------------aggaaagaaaggaagaaagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     617532 120 +   2037526 gagagagag-----------gagggagggaggaaggaaggaaggagagagagagagagaaagaaagaagaa--------agagagaaagaaagaaaggaaag-aaggaaggaaggaaaga--------------------------aggaaagaaaggaagaaagg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75292563 165 + 122973662 gagaaagagagagagagggggagggagggaggaaggaaggaaggagagaaagaaagagacagaga-aggaaaggaaaaaggaaggaaggaaggaaaggaaagaaaggaagaaaagaaagaaaaagaaaacgaaagaaagaagaaagaagaaagaaagaaagagaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31211347  48 + 172585720 ---------------------------ccgcgaaagaaagaaagaaaaagagaa-------------------------agagaaagaaaagaaaagaaa------------------------------------------------------------------
i rheMac8.chr4             C 0 I 4
s macFas5.chr4             30500805  48 - 170955103 ---------------------------ccgcgaaagaaagaaagaaaaagagaa-------------------------agagaaagaaaagaaaagaaa------------------------------------------------------------------
i macFas5.chr4             C 0 I 2
s macNem1.NW_012012100v1     784788  48 +   1495729 ---------------------------ccgcgaaagaaagaaagaaaaagagaa-------------------------agagaaagaaaagaaaagaaa------------------------------------------------------------------
i macNem1.NW_012012100v1   C 0 I 4
s chlSab2.chr17            30058488  36 -  71996105 ---------------------------ccgc------------gaaaaaaagaa-------------------------agagaaagaaaagaaaaGAAG------------------------------------------------------------------
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     709822  64 -   1829203 ---------------------------ccgcgaaagaaagaaagagaaagagaaaga---------gagaaagagaaagagagaaagaaaagaaaagaga------------------------------------------------------------------
i colAng1.NW_012115577v1   C 0 I 6
s saiBol1.JH378327            40352  20 -    750284 --------------------------------------------------------------------------------aaaaaaaaaaaaaaaaaaaa------------------------------------------------------------------
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     480311  12 -    486031 I
e cebCap1.NW_016107755v1    1291420  19 -   1771730 I
e calJac3.chr4             30875556   0 + 171630274 C
e manLeu1.NW_012106264v1      52194 218 +    779361 I
e cerAty1.NW_012002513v1      18913  28 -    811324 I

a score=61262.000000
s hg38.chr6_GL000254v2_alt  1841583 17 +   4827813 aagaaagaaagaaaggC
s panTro5.chr6             30688369 17 + 175400573 aagaaagaaagaaaggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31112328 17 + 173848474 aagaaagaaagaaaggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     617652 17 +   2037526 aagaaagaaagaaaggc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75292728 17 + 122973662 gaaaaggaaagaaaggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31211399 14 + 172585720 ---aaggaaaggaaggc
i rheMac8.chr4             I 4 C 0
s macFas5.chr4             30500855 14 - 170955103 ---aaggaaaggaaGGC
i macFas5.chr4             I 2 C 0
s macNem1.NW_012012100v1     784840 14 +   1495729 ---aaggaaaggaaggc
i macNem1.NW_012012100v1   I 4 C 0
s chlSab2.chr17            30058524 11 -  71996105 ------GAAAGGAAGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      52412 17 +    779361 aagaaGGAAAGGAAGGC
i manLeu1.NW_012106264v1   I 218 C 0
s colAng1.NW_012115577v1     709892 14 -   1829203 ---aaggaaaggaaggc
i colAng1.NW_012115577v1   I 6 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            40372  0 -    750284 C
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     480311 12 -    486031 I
e cebCap1.NW_016107755v1    1291420 19 -   1771730 I
e calJac3.chr4             30875556  0 + 171630274 C
e cerAty1.NW_012002513v1      18913 28 -    811324 I

a score=276935.000000
s hg38.chr6_GL000254v2_alt  1841600 31 +   4827813 AAATGATCACTTAGAGGATTTTGTTTGGTAG
s panTro5.chr6             30688386 31 + 175400573 aaatgatcacttagaggattttgtttggtag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31112345 31 + 173848474 aaatgatcacttagaggattttgtttggtag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     617669 31 +   2037526 aaatgatcacttagaggattttgtttggtag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75292745 31 + 122973662 aaatgatcacttagaggattctgtttggtaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31211413 31 + 172585720 aaaCGATCACTTAGAGGATTTTGTTTGGTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30500869 31 - 170955103 AAACGATCACTTAGAGGATTTTGTTTGGTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     784854 31 +   1495729 aaaCGATCACTTAGAGGATTTTGTTTGGTAG
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30058535 31 -  71996105 AAACGATCACTTAGAGGATTCTCTTTGGTAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      52429 31 +    779361 AAACGATCACTTAGAGGATTCTGTTTGGTAG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     709906 31 -   1829203 aaagGCTCACTTAGAGGATTCTGTTTGGTAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30875556 31 + 171630274 aaatgatcacttagaggattctgtttggtag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            40372 27 -    750284 ----GATCACTTAGAGGATTCTGTTTGGTAG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1291439 31 -   1771730 aaaTGATCACTTAGAGGATTCTGTTTGGTAG
i cebCap1.NW_016107755v1   I 19 I 308
s aotNan1.NW_018496901v1     480323 31 -    486031 aaaTGATCACTTAGAGGATTCTGTTTGGTAG
i aotNan1.NW_018496901v1   I 12 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e cerAty1.NW_012002513v1      18913 28 -    811324 I

a score=14976.000000
s hg38.chr6_GL000254v2_alt  1841631 2 +   4827813 TT
s panTro5.chr6             30688417 2 + 175400573 tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31112376 2 + 173848474 tt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     617700 2 +   2037526 tt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75292776 2 + 122973662 tt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31211444 2 + 172585720 TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30500900 2 - 170955103 TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     784885 2 +   1495729 TT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30058566 2 -  71996105 TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      52460 2 +    779361 TT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     709937 2 -   1829203 TT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30875587 2 + 171630274 tt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            40399 2 -    750284 CT
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018496901v1     480354 2 -    486031 TT
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e cebCap1.NW_016107755v1    1291470 308 -   1771730 I
e cerAty1.NW_012002513v1      18913 28 -    811324 I

a score=4657797.000000
s hg38.chr6_GL000254v2_alt  1841633 558 +   4827813 AAAACCATTTTGAAACAGAGGGAGGGAAGAAATCACCTATGCTTCCTCAGTGGTAAAGAGACTGGGAACCACCACGCCAGAGTTAGAAAATATGAGGCAACAGAAGGGCTG-TTATATGTAGTGAAAATTTCCAAACCCGGTCCCCTGGAGGGAATACTTGGTGACTGGGCCTTAGAGGAAAGAGATGCTTGTCCAGCCCATTGCCTGTGTGTCCAGGAGAGACTGTGCCCACCTTGAGAGACTGAGAGAAGACCCTAGTGAGGAGAAGCCCCCAGGCCAGCC-GTCAGC-ACAGGGCATTGGAGGTCCCCAACCAGCTCCAAGTCCTGAACAGAGCACAGCCTCCAGAGGTTTGTACTGTTCATACCCAGCAGAGGCTGTGTGCCAGCCCTCCCCATGCAAATCAGCGTCCCTGCAGGG-TATGTAAAGGACCTCTACCTATGCTTTCTATGGGGGAACAAATATCCCATGGGACACTGAAAGACTATGGAACATTGTAGAACAT--------------------------------------GTATTTACCAAACTGTGTCCAACTCAGAGCCTAAATTGTTTATTGGTGCTGTTTCA
s panTro5.chr6             30688419 558 + 175400573 aaaaccattttgaaacatagggtgggaagaaatcacctatgcttcctcagtggtaaagagactgggaaccacCACGCCAGAGTTAGAAAATATGAGGCAACAGAAGGGCTG-TTATATGTAGTGAAAATTTCCAAACCCGGTCCCCTGGAGGGAATACTTGGTGACTGGGCCTTAGAGGAAAGAGATGCTTGTCCAGCCCATTGCCTGTGTGTCCAGGAGAGACTGTGCCCACCTTGAGAGACTGAGAGAAGACCCCAGTGAGGAGAAGCCCCCAGGCCAGCC-GTCAGC-ACAGGGCATTGGAGGTCCCCAACCAGCTCCAAGTTCTGAACAGAGCACAGCTTCCAGAGGTTTGTACTATTCATACCCAGCAGAGGCTGTGTGCCAGCCCTCCCCATGCAAATCAGCGTCCCTGCAGGG-TATGTAAAGGACCTCTACCTATGCTTTCTATGGGGGAACAAATATCCCATGGGACACTGAAAGACTATGGAACATTGTGGAACAT--------------------------------------GTATTTACCAAACTGTGTCCAACTCAGAGCCTAAATTGTTTATTGGTGCTGTTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31112378 558 + 173848474 aaaaccattttgaaacatagggtgggaagaaatcacctatgcttcctcagtggtaaagagactgggaaccacCACGCCAGAGTTAGAAAATATGAGGCAACAGAAGGGCTG-TTATATGTAGTGAAAATTTCCAAACCCGGTCCCCTGGAGGGAATACTTGGTGACTGGGCCTTAGAGGAAAGAGATGCTTGTCCAGCCCATTGCCTGTGTGTCCAGGAGAGACTGTGCCCACCTTGAGAGACTGAAAGAAGACCCCAGTGAGGAGAAGCCCCCAGGCCAGCC-GTCAGC-ACAGGGCATTGGAGGTCCCCAACCAGCTCCAAGTTCTGAACAGAGCACAGCCTCCAGAGGTTTGTACTATTCATACCCAGCAGAGGCTGTGTGCCAGCCCTCCCCATGCAAATCAGCGTCCCTGCAGGG-TATGTAAAGGACCTCTACCTATGCTTTCTATGGGGGAACAAATATCCCATGGGACACTGAAAGACTATGGAACATTGTGGAACAT--------------------------------------GTATTTACCAAACTGTGTCCAACTCAGAGCCTAAATTGTTTATTGGTGCTGTTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     617702 558 +   2037526 aaaaccattttgaaacatagggtgggaagaaatcacctatgcttcctcagtggtaaagagactgggaaccacCACGCCAGAGTTAGAAAATATGAGGCAACAGAAGGGCTG-TTATATGTAGTGAAAATTTCCAAACCCGGTCCCCTGGAGGGAATACTTGGTGACTGGGCCTTAGAGGAAAGAGATGCTTGTCCGGCCCATTGCCTGTGTGTCCAGGTGAGACTGTGCCCACCTTGAGAGACTGAGAGAAGACCCTAGTGAGGAGAAGCCCCCAGGCCAGCC-ATCAGC-ACAGGGCATTGGAGGTCCCCAACCAGCTCCAAGTTCTGAACAGAGCACAGCCTCCAGAGGTTTGTACTGTTCATACCCAGCAGAGGCTGTGTGCCAGCCCTCCCCATGCAAATCAGCATCCCTGCAGGG-TATGTAAAGGACCTCTACCTATGCTTTCTATGGGGGAACAAATATCCCATGGGACACTGAAAGACTATGGAACATTGTAGAACAT--------------------------------------GTATTTACCAAACTGTGTCCAACTCAGAGCCTAAATTGTTTATTGGTGCTGTTTCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75292778 597 + 122973662 aaaaccattttgaaacatagggagggaagaaatcacctatgcttcctcagtggtaaagagactgggaaccacCACTCCAGAGTTAGAAAATATGAGGCAACAGAAGGGCTG-TTATACGTAGTGAGAATTTCCAAACCCAGTCCTCTGGAGGGAATACTTGGTGACTGCGCCTTAGAGGAAAGAGATGCTTGTCCGGCCCATTGCCTGTGTGCCCAGGAGAGACTGTGCCCACCTTGAGAGACTGAGAGAAGACCCTAGTGAGGAGAAGCCCCCAGACCAGCC-ATCAGC-ACAGGGCATTGGAGGCCCCCAACCAGCTCCAAGTTCTGAACAGAGCACAGCCTCCAGAGGCTTGTACTGTTCATACCCAGCAGAGGCTGTGTGCCAGCCCTCCCCATGCAAATCAGCATCCCTGCAGGGTTATGTAAAGGACCTCTACCTATGCTTTCTATGGGGGAACAAATATCCCATGGGACACTGAAAGACTATGGAACATTGTAGAACATTTACCCAACTGTGTAGAATATTTACCAAACATTGTAGAATACTTACCAAACTGTGTCCAACTCAGAACCTAAAGTGTTTATTGGTGCTGTTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31211446 553 + 172585720 -AAACCATGTTGAAAC--AGGGAGGGAAGAAATCACCTATGCTTCCTTAGTGATAAAGAGACTGGGAACCACCACTCCAGAGTTAGAAAATATGAGACAACAGAAGGGCTG-TTATATGTAGTGAGAATTTCCAAACCCGGCCCCCTGGAGGGAATACTTGGTGACTGGGCCTTAGAGGAAAGAGATACTTGTCCAGCCCATTGCCTGCGTGCCCAGGAGAGACTGTGCCCACCTTGAGATACTGAGAGAAGACCCTAGTGAGGAGAAGCCCCCAGGCCAGCT-GTCAGC-ACAGGGCCTTGGAGGGCCCCAACCAGCTCCAAGTTCTGAACAGAGCACAGCCTCCAGAGGCTTGTACTGTTCATACCCAGCAGAGGCTGTGTGCCAGCCCTCCCCATGCAAATCAGCATCCCTGCAGGG-TATGTAAAGGACCTCTACCTACGCTCTCTATGGGGAAGCAAATATCCCACGGGACACTGAAAGAC--TGGAACATTGTGGAACAT--------------------------------------GTATTTACCAAACTGTGTCCAACTCAAAGCCTAAAGTGTTTATTGGTGTTGTTTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30500902 553 - 170955103 -AAACCATGTTGAAAC--AGGGAGGGAAGAAATCACCTATGCTTCCTTAGTGATAAAGAGACTGGGAACCACCACTCCAGAGTTAGAAAATATGAGACAACAGAAGGGCTG-TTATATGTAGTGAGAATTTCCAAACCCGGCCCCCCGGAGGGAATACTTGGTGACTGGCCCTTAGAGGAAAGAGATACTTGTCCAGCCCATTGCCTGCGTGCCCAGGAGAGACTGTGCCCACCTTGAGATACTGAGAGAAGACCCTAGTGAGGAGAAGCCCCCAGGCCAGCT-GTCAGC-ACAGGGCCTTGGAGGGCCCCAACCAGCTCCAAGTTCTGAACAGAGCACAGCCTCCAGAGGCTTGTACTGTTCATACCCAGTAGAGGCTGTATGCCAGCCCTCCCCATGCAAATCAGCGTCCCTGCAGGG-TATGTAAAGGACCTCTACCTACGCTGTGTATGGGGAAGCAAATATCCCATGGGACACTGAAAGAC--TGGAACATTGTGGAACAT--------------------------------------GTATTTACCAAACTGTGTCCAACTCAAAGCCTAAAGTGTTTATTGGTGTTGTTTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     784887 553 +   1495729 -AAACCATGTTGAAAC--AGGGAGGGAAGAAATCACCTATGCTTCCTTAGTGATAAAGAGACTGGGAACCACCACTCCAGAGTTAGAAAATATGAGACAACAGAAGGGCTG-TTATATGTAGTGAGAATTTCCAAACCCGGCCCCCTGGAGGGAATACTTGGTGACTGGCCCTTAGAGGAAAGAGATACTTGTCCAGCCCATTGCCTGCGTGCCCAGGAGAGACTGTGCCCACCTTGAGATACTGAGAGAAGACCCTAGTGAGGAGAAGCCCCCAGGCCAGCT-GTCAGC-ACAGGGCCTTGGAGGGCCCCAACCAGCTCCAAGTTCTGAACAGAGCACAGCCTCCAGAGGCTTGTACTGTTCATACCCAGTAGAGGCTGTGTGCCAGCCCTCCCCATGCAAATCAGCGTCCCTGCAGGG-TATGTAAAGGACCTCTACCTACGCTGTGTATGGGGAAGCAAATATCCCATGGGACACTGAAAGAC--TGGAACATTGTGGAACAT--------------------------------------GTATTTACCAAACTGTGTCCAACTCAAAGCCTAAAGTGTTTATTGGTATTGTTTCA
i macNem1.NW_012012100v1   C 0 I 552
s chlSab2.chr17            30058568 554 -  71996105 AAAACCACGTTGAAAC--AGGGAGGGAAGAAATCACCTATGCTTCCTTAGTAATAAAGAGACTGGGAACCACCACTCTAGAGTTAGAAAATACGAGACAACAGAAGGGCTG-TTATATGTAGTGAGAATTTCCAAACCCGGCCCCCTGGAGGGAATACTTGGTGACTGGGCCTTAGAGGAAAGAAATACTTGTCCAGCCCATTGCCTGCGTGCCCAGGAGAGACTGTGCCCACCTTGAGATACTGAGAGAAGACCCTAGTGAGGAGAAGCCCCCAGGCCAGCT-GTCAGC-ACAGGGCCTTGGAGGGCCCCAACCAGCTCCAAGTTCTTAACAGAGCACAGCCTCCAGAGGCTTGTACTGTTCATACCCAGTAGAGGCTGTGTGCCAGCCCTCCCCATGCAAATCAGCGTCCCTGCAGGG-TATGTAAAGGACCTCTACCTACGCTCTCTATGGGGAAGCAAATATCCCATGGGACACTGAAAGAC--TGGAACATTGTGGAACAT--------------------------------------GTATTTACCAAACTATGTCCAACTCAAAGCCTAAAGTGTTTATTGGTGTTGTTTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      52462 554 +    779361 AAAACCATGTTGAAAC--AGGGAGGGAAGAAATCACCTATGCTTCCTTAGTGATAAAGAGACTGGGAACCACCACTCCAGAGTTAGAAAATATGAGACAACAGAAGGGCTG-TTATATGTAGTGAGAATTTCCAAACCCGGCCCCCTGGAGGGAATACTTGGTGACTGGGCCTTAGAGGAAAGAGATACTTGTCCAGCCCATTGCCTGCGTGCCCAGGAGAGACTGTGCCCACCTTGAGATACTGAGAGAAGACCCTAGTGAGGAGAAGCCCCCAGGCCAGCT-GTCAGC-ACAGGGCCTTGGAGGGCCCCAACCAGCTCCAAGTTCTGAACAGAGCACAGCCTCCAGAGGCTTGTACTGTTCATACCCAGCAGAGGCTGTGTGCCAGCCCTCCCCATGCAAATCAGCATCCCTGCAGGG-GATGTAAAGGACCTCTACCTACGCTCTCTATGGGGAAGCAAATATCCCATGGGACACTGAAAGAC--TGGAACATTGTGGAACAT--------------------------------------GTATTTACCAAACTCTGTCCAACTCAAAACCTAAAGTGTTTATTGGTGTTGTTTCA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     709939 557 -   1829203 AAAACCATGTTGAAACATAGGGAGGGAAGAAATCATCTATGCTTCCTTAGTGATAAAGAGACTGGGAACTACCACTCCAGAGTTAGAAAATATGAGACAACAGAAGGGCTG-TTATATGTAGTGAGAATTTCCAAACCCAGCCCCCTGGAGGGAATACTTGGTGACTGGGCCTTAGAGGAAAGAGATACTTGTCCAGCCCATTGCCTGCGTGCCCAGGAGAGACTGTGCCCACCTTGAGATACTGAGAGAAGACCCTAGTGAGGAGAAGCCCCCAGGCCAACT-GTCAGCAACAGGGCGTTGGAAGGCCCCAACCAGCTCCAAGTTCTGAACAGAGCACAGCCTCCAGAGGCTTGTACTGTTCATACCCAGCAGAGGCTGTGTGCCAGCCCTCCCCATGCAAATCAGCGTCCCTGTAGGG-TATGTAAAGGACCTCTACCTACGCTTTCTATGGGGAAGCAAATATCCCATGGGACACTGAAAGAC--TGGAACATTGTGGAACAT--------------------------------------GTACTTACCAAACTGTGTCCAACTCAAAGCCTAAAGTGTTTATTGGTGTTGTTTCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30875589 555 + 171630274 aaaaccattttgaaacataaggagggaagaaatcccctaagcttccttagtggtgaagagactgggaaccacCACTCCAGAATTAGAAAATACGAGGGGGCAGAAGGGCTG-TTACATGTAGTGAGAATTTGCAAACCCCAACCCCTGGAGGGAATGCTTGGTGACTGGGCCTTAGACAGGAGAGATGCTTGTCCCGCCCATTGTCTGTGTGCGCAGGAGAGACTGTACACACCTTTAGAGACTGAGAGAAGACCCTAGTGAGGAGAAGCCCCCAGGACAGCTCATCAGC-ACAGGGCATTGGAGGCCCCCAACTGGCTCCAAGTTCTGAACAG-TCACAGCCTCCAGAGGCCTGTAGTGCTCATACCCAGCAGA-GTTGTGCACCAGCCCTCCCCATGCAAATCACTGTCCCTGCAGGG-TTTGTAAAGGACCTCTACCTGTGCTCTCCATGTGGGAATAAATAGCCCATGGGACACTGAAAGACT--GGAATGCTGCAGAACAT--------------------------------------GTATTTACCTCACTGTGTCCAACTCACAGCCCAAGGTGTTTATTGGTGGTGTTTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            40401 547 -    750284 AAAACCATATTGAAACAGAAGGAGGGAAGAAATCCCCTAAGCTTCCTTAGTGGTGAAGAGACTGGGAGCCACCACTCCAGAATTAGAAAATACTAGGTGACAGAAGAGCTGTTTATATGTAGTGAGAATTTCCAAAGCCCACCCCCTGGAGGGAATGCTTGGTGACTGGGCCTTAGAGGGGAGAGATGCTTGTCCAGCCCATTGTCTGTGTGCCCGGGAGAGACTGTGCACACCTTTAGAGACTGAGAGAAGACCCTAGTGAGGAGAAGCCCCCAGGCCAGCTCGTCAGC-ACAGGGCATTGGAGGCCCCCAACCGGCTCCAAGTTCTGAAGAG-TCACAGCCCCCAGAGGCCTGCACTGCTCACAGCCAGCAGA-GCTGTGCACCAGCCCTCCCCATGCAAATCACTGTCCCTGCAGGG-TATGTAAAGGACCTGTACC-----------TGTGGGAACAAATAGCCCATGGGACACTGAAAGACTACGGAATGCTGCAGCACAT--------------------------------------GTATTGACCTCACTGTGTCCAACTCACAGCCTAAGGTGTTTATTGGTGTTGTTTCA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1291778 535 -   1771730 aaaaCTATATTGAAACATAAGGAGGGAAGAAATCCCCTAAGCTTCCTCAGTGGTGAAGAGACTGGGAGCCACCACTCCAGAAATAGAAAATACTAGGCGACCGAAGGGCTG-CTACAGGTAGTGAGAATTTCCAAACCCCACCCCCTGGAGGGAATGCTTGGTAACTGGGCCTTAGAGAGGAGAGTTGCTTGTCCAGCCCATTGTCTGTATGCCCAGG-------------------AGAGACTGAGAGAAGACCCTAGTGAGGAGAAGCCCCCAGGCCAGCTCGTCAGC-ACAGGG--TTGGAGGCCCCCAACCGGCTCCAAGTTCTGAACAG-TCACAGCCTCCAGAGGCCTGTACTGCTCACACCCAGCAGA-GCTGTGCACCAGCCCTCGCCATGCAAATCACTCTCCCTGCAGGG-TATGTAAAGGACCTCTACCTCTGCTCTCCATGTGGGGACAAATATCCCACAGGACACTGAAAGACTATGGAACGCTGCAGAACAT--------------------------------------GTATT-ACCTCACTGTGTCCAACTCGCAGCCTAAGGTGTTTATTGGTGTTGTTTCA
i cebCap1.NW_016107755v1   I 308 C 0
s aotNan1.NW_018496901v1     480356 557 -    486031 AAAACCATACTGAAACGTAAGTAGGGAAGAAATATCCTAAGCTTCCTCAGTGGTGAAGAGACTGGGAACCACCACTCTAGAATTAGAAAATAGGAGGCAACAGAAGGGCTG-TTATATGTAGTGAGAATTTCCAAACCCCACCCTCTGGAGGGAATGCTTGGTGACTGGGCCTTAGAGGGGAGAGGTGCTCGTCCAGCCCATTGTCTGCATGCCCAGGAGAGACTGTGCACACCTTTAGAGACTGAGAGAAGACCCTAGTGAGGAGAAGCCCCCAGGCCAGCTCGTCAGC-ACAGGGCATTGGAGGCCCCCAACCGGCTCCAAGTTCTGAACAG-TCACAGCCTCCAGAGGCCTGTACTGCTCACACCCAGCAGA-GCTGTGCACCAGCCCTCCCCATGCAAATCACTGTCCCTGCAGCA-TATGTAAAGGACCTCTACCTGTGCTCTCCATGTGGGAACAAATATCCCATGGGACACTGAAAGACTATGGAATGCTGTAGAAAAT--------------------------------------GTGTTTACCTCACTGTGTCCAACTCACAGCCTAAGGTGCTTATTGGTATTGTTTCA
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e cerAty1.NW_012002513v1      18913  28 -    811324 I

a score=73692.000000
s hg38.chr6_GL000254v2_alt  1842191 10 +   4827813 ACCAGTACAC
s panTro5.chr6             30688977 10 + 175400573 ACCAGTACAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31112936 10 + 173848474 ACCAGTACAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     618260 10 +   2037526 ACCAGTACAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75293375 10 + 122973662 GCCAGCACAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31211999 10 + 172585720 GCCAGCACAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30501455 10 - 170955103 GCCAGCACAC
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            30059122 10 -  71996105 GCCAGCACAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      53016 10 +    779361 GCCAGCACAC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     710496 10 -   1829203 GCCAGCACAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30876144 10 + 171630274 ACCAGCACAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            40948 10 -    750284 ACCAGTACAT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1292313 10 -   1771730 ACCAGTACAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     480913 10 -    486031 ACCAGTACAC
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e cerAty1.NW_012002513v1      18913 28 -    811324 I
e macNem1.NW_012012100v1     785440 552 +   1495729 I

a score=34735.000000
s hg38.chr6_GL000254v2_alt  1842201 10 +   4827813 GTGATTCTTT
s panTro5.chr6             30688987  7 + 175400573 GTGATTC---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31112946  7 + 173848474 GTGATTC---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     618270  7 +   2037526 GTGATTC---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75293385 10 + 122973662 GTGATTCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31212009 10 + 172585720 GTAATTCTTT
i rheMac8.chr4             C 0 I 12
s chlSab2.chr17            30059132 10 -  71996105 GTAATTCTTT
i chlSab2.chr17            C 0 I 12
s manLeu1.NW_012106264v1      53026 10 +    779361 GTAATTCTTT
i manLeu1.NW_012106264v1   C 0 I 12
s colAng1.NW_012115577v1     710506 10 -   1829203 GTAATTCTTT
i colAng1.NW_012115577v1   C 0 I 12
s calJac3.chr4             30876154 10 + 171630274 GTGATTCTTT
i calJac3.chr4             C 0 I 757
s cebCap1.NW_016107755v1    1292323 10 -   1771730 GTGATTCTTT
i cebCap1.NW_016107755v1   C 0 I 12
s aotNan1.NW_018496901v1     480923 10 -    486031 ATGATTCTTT
i aotNan1.NW_018496901v1   C 0 I 15
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            40958  0 -    750284 C
e otoGar3.GL873550           640361 22726 +  18854210 I
e cerAty1.NW_012002513v1      18913 28 -    811324 I
e macNem1.NW_012012100v1     785440 552 +   1495729 I
e macFas5.chr4             30501465  0 - 170955103 C

a score=759.000000
s hg38.chr6_GL000254v2_alt  1842211 2 +   4827813 TT
s panTro5.chr6             30688994 2 + 175400573 TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31112953 1 + 173848474 -T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     618277 1 +   2037526 -T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75293395 2 + 122973662 CT
i nomLeu3.chr1a            C 0 I 1724
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            40958 0 -    750284 C
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     480933 15 -    486031 I
e cebCap1.NW_016107755v1    1292333 12 -   1771730 I
e calJac3.chr4             30876164 757 + 171630274 I
e colAng1.NW_012115577v1     710516 12 -   1829203 I
e manLeu1.NW_012106264v1      53036 12 +    779361 I
e chlSab2.chr17            30059142 12 -  71996105 I
e cerAty1.NW_012002513v1      18913 28 -    811324 I
e macNem1.NW_012012100v1     785440 552 +   1495729 I
e macFas5.chr4             30501465 0 - 170955103 C
e rheMac8.chr4             31212019 12 + 172585720 I

a score=318041.000000
s hg38.chr6_GL000254v2_alt  1842213 573 +   4827813 TTtttttttttttttagtatttattgatcattcttgagtgtttctcggagagggggatttagcagggtcataggacaatagtggagggaaggtcagcagataaacatgtgaacaaaggtctctggttttcctaggcagaggaccctgcggccttctgcagtgtttgtgtccctgggtacttgagattagggagcggtgatgactcttaatgaggatgctgccttcaagcatctgtttaacaaagcacatcttgcaccgcccttaatccatttaaccctgagtggacacagcacatgtttcagagagcacggggttgggggtaaggctatagatcaacagcatcccaaggcagaagaacctctcccagtacagaacaaaatggagtctcccatgtccacctctttccacacagacacagtaacaatctgatctctctttcttttccccacatttcccccttttctattcgacaaaaccgccatcgtcatcatggcccgttctcaatgagctgttgggtacacctcccagacggggtgacggccgggcagaggggctcctcacttcccagacggg
s panTro5.chr6             30688996 573 + 175400573 tttttttttttttatggtatttattgatcattcttgggtgtttctcggagagggggatttggcagggtcataggacaatagtggagggaaggtcagcagatacacatgtgaacaagggtctctggttttcctaggcagaggaccctgcggccttcagcagtgtttgtgtccctgggtacttgagattagggggtggtgatgactcttaacgagcatgctgccttcaagcatctgttcaacaaagcacatcttgcaccgcccttaatccatttaaccctgagtggacacagcacatgtttcagagagcacggggttgggggtaaggctatagatcaacagcatcccaaggcagaagaacctctcccagtacagaacaaaatggagtctcccatgtccacctctttccacacagacacggtaacaatctgatctctctttcttttccccacacttcccccttttctattcgacaaaaccgccatcgtcatcatggcccgttctcaatgagctgttgggtacacctcccagatggggtggcggccgggcagaggggctcctcacttcccagacggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31112954 573 + 173848474 tttttttttttttatggtatttattgatcattcttgggtgtttctcggagagggggatttggcagggtcataggacaatagtggagggaaggtcagcagatacacatgtgaacaagggtctctggttttcctaggcagaggaccctgcggccttcagcagtgtttgtgtccctgggtacttgagattagggggtggtgatgactcttaacgagcatgctgccttcaagcatctgttcaacaaagcacatcttgcaccgcccttaatccatttaaccctgagtggacacagcacatgtttcagagagcacggggttgggggtaaggctatagatcaacagcatcccaaggcagaagaacctctcccagtacagaacaaaatggagtctcccatgtccacctctttccacacagacacggtaacaatctgatctctctttcttttccccacacttcccccttttctattcgacaaaaccgccatcgtcatcatggcccgttctcaatgagctgttgggtacacctcccagatggggtggcggccgggcagaggggctcctcacttcccagacggg
i panPan2.chr6             C 0 I 583
s gorGor5.CYUI01015528v1     618278 572 +   2037526 TTtttttttttttatagtatttattgatcattcttgggtgtttcgcggagagggggatttggcagggtcataggacaatagtggagggaaggtcagcagatacacatgtgaacaagggtctctggttttcctaggcagaggaccctgcggccttcagcagtgtttgtgtccctgggtacttgagattagggggtggtgatgactcttaacgagcatgctgccttcaagcatctgttcaacaaagcacatcttgcaccgcccttaatccatttaaccctgagtggacacagcacatgtttcagagagcacggggtt-ggggtaaggctatagatcaacagcatcccaaggcagaagaacctctcccagtacagaacaaaatggagtctcccatgtccacctctttccacacagacagggtaacaatctgatctctctttcttttccccacatttcccccttttctattcgacaaaaccgccatcgtcatcatggcccgttctcaatgagctgttgggtacacctcccagatggggtggcggccgggcagaggggctcctcacttcccagacggg
i gorGor5.CYUI01015528v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            40958   0 -    750284 C
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     480933  15 -    486031 I
e cebCap1.NW_016107755v1    1292333  12 -   1771730 I
e calJac3.chr4             30876164 757 + 171630274 I
e colAng1.NW_012115577v1     710516  12 -   1829203 I
e manLeu1.NW_012106264v1      53036  12 +    779361 I
e chlSab2.chr17            30059142  12 -  71996105 I
e cerAty1.NW_012002513v1      18913  28 -    811324 I
e macNem1.NW_012012100v1     785440 552 +   1495729 I
e macFas5.chr4             30501465   0 - 170955103 C
e rheMac8.chr4             31212019  12 + 172585720 I
e nomLeu3.chr1a            75293397 1724 + 122973662 I

a score=56953.000000
s hg38.chr6_GL000254v2_alt  1842786 261 +   4827813 ccgggcagaggcgccccccacctcccgaacggggcggctggcagggcgggggctgccccccacctcctg--------------------------------------gacggggcggctgccgggcggagacgctcctcacttcccagacggggcggctgccgggcggaggggctcctcacttctcagacagggcggcccggcagagacgcccctcacctcccagacggggtggcggtcgggcagagacactcctcagttcccagacggggtcgccgccggacagaggcgctccgcaca
s panTro5.chr6             30689569 221 + 175400573 ccgggcagaggtgtcccccacctcccagacggggcggctggccgggcgggggctgccccccacctcctg------------------------------------------------------------------------------gacggggcggctgccaggcggaggggctcctcacttctcagacggggcgtacgggcagagacacccctcacctcccagacggggtggcggtcgggcagagacactcctcagttcccagacagggtcgcggctggacagaggcgctcctcaca
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     618850 299 +   2037526 ccgggcagaggcgtcccccacctcccggacggggcggctggccgggcgggggctgccccccacctcctggacgggggctggccgggcggggctgcccccacctcctggacggggcggctgccgggcggagacgctcctcacttcccagacagggcggctgccggacggaggggctcctcacttctcagacggggcggacgggcagagacacccctcacctcccagacggggtggcggttgggcagagacactcctcagttcccagacggggtcgcggccggacagaggcactcctcaca
i gorGor5.CYUI01015528v1   C 0 I 190
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            40958   0 -    750284 C
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     480933  15 -    486031 I
e cebCap1.NW_016107755v1    1292333  12 -   1771730 I
e calJac3.chr4             30876164 757 + 171630274 I
e colAng1.NW_012115577v1     710516  12 -   1829203 I
e manLeu1.NW_012106264v1      53036  12 +    779361 I
e chlSab2.chr17            30059142  12 -  71996105 I
e cerAty1.NW_012002513v1      18913  28 -    811324 I
e macNem1.NW_012012100v1     785440 552 +   1495729 I
e macFas5.chr4             30501465   0 - 170955103 C
e rheMac8.chr4             31212019  12 + 172585720 I
e nomLeu3.chr1a            75293397 1724 + 122973662 I
e panPan2.chr6             31113527 583 + 173848474 I

a score=22165.000000
s hg38.chr6_GL000254v2_alt  1843047 80 +   4827813 tcccagacggggcggcggggcagaggcgctccccacatctcagacgatgggcggccgggcagatacgctcctcacttcct
s panTro5.chr6             30689790 80 + 175400573 tcccagacggggcggcggggcagaggcgctccccacatctcagacgatgggcggccgggcagagacgctcctcacttcct
i panTro5.chr6             C 0 I 307
s gorGor5.CYUI01015528v1     619339 80 +   2037526 tcccagacggggtggcgaggcagaggcgctccccacatctcagacgatgggtggccgggcagagacgctcctcacttcct
i gorGor5.CYUI01015528v1   I 190 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            40958  0 -    750284 C
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     480933 15 -    486031 I
e cebCap1.NW_016107755v1    1292333 12 -   1771730 I
e calJac3.chr4             30876164 757 + 171630274 I
e colAng1.NW_012115577v1     710516 12 -   1829203 I
e manLeu1.NW_012106264v1      53036 12 +    779361 I
e chlSab2.chr17            30059142 12 -  71996105 I
e cerAty1.NW_012002513v1      18913 28 -    811324 I
e macNem1.NW_012012100v1     785440 552 +   1495729 I
e macFas5.chr4             30501465  0 - 170955103 C
e rheMac8.chr4             31212019 12 + 172585720 I
e nomLeu3.chr1a            75293397 1724 + 122973662 I
e panPan2.chr6             31113527 583 + 173848474 I

a score=69319.000000
s hg38.chr6_GL000254v2_alt  1843127 286 +   4827813 agatggggtggtggccgggcagaggctgcagtctcggcactttgggaggccaaggcaggcggctgggaggtggaggctgtagcgagccgagatcacgccactgcactccagcctgggcaagattgagcactgagtgagcgagactccgtctgcaatcccggcacctcgggaggccgaggtgggcagatcactcgcggtcaggagctggagaccagcccggccaacacggggaaaccccatctccaccaaaaaatacaaaa-acAAAAAAAACCAAAAAAAAAACCAA
s panTro5.chr6             30690177 286 + 175400573 agacggggtggcggccgggcagaggctgcaatctcggcactttgggaggccaaggcaggcggctgggaggtggaggctgtagccagctgagatcacgccactgcactccagcctgggcaagattgagcactgagtgagcgagactctgtctgcaatcccggcatctcgggaggccgaggcgggcagatcactcgcggtcaggagctggagaccagcccggccaacacggcaaaaccccgtctccaccaaaaaataaaaaaTaaaacaaaaaacaaaaaaaaaaC-AC
i panTro5.chr6             I 307 C 0
s gorGor5.CYUI01015528v1     619419 269 +   2037526 agacggggtggcggccgggcagaggctgcaatctcggcactttgggaggccaaggcaggcggctgggaggtggaggctgtagccagccgcgatcgcgccactgcactccagcctgggcaagattgagcactgagtgagcgagactccgtctgcaatcccggcacctcgggaggctgaggcgggcagatcactcgcagtcaggagctggagaccagcccggccaaca-ggcgaaaccccgtctccaccaaaaaatacaaag-----------------aAAAAACCAC
i gorGor5.CYUI01015528v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            40958   0 -    750284 C
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     480933  15 -    486031 I
e cebCap1.NW_016107755v1    1292333  12 -   1771730 I
e calJac3.chr4             30876164 757 + 171630274 I
e colAng1.NW_012115577v1     710516  12 -   1829203 I
e manLeu1.NW_012106264v1      53036  12 +    779361 I
e chlSab2.chr17            30059142  12 -  71996105 I
e cerAty1.NW_012002513v1      18913  28 -    811324 I
e macNem1.NW_012012100v1     785440 552 +   1495729 I
e macFas5.chr4             30501465   0 - 170955103 C
e rheMac8.chr4             31212019  12 + 172585720 I
e nomLeu3.chr1a            75293397 1724 + 122973662 I
e panPan2.chr6             31113527 583 + 173848474 I

a score=25547.000000
s hg38.chr6_GL000254v2_alt  1843413 29 +   4827813 GTGATTCTTTCTGCAGAGGACATCTTGGC
s panTro5.chr6             30690463 29 + 175400573 GTGATTCTTTCTGCAGAGGACATCTTGGC
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     619688 29 +   2037526 GTGATTCTTTCTGCAGAGGACATCTTGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             30501465 29 - 170955103 GTAATTCTTTCCGCAGAGGACATCTTGGC
i macFas5.chr4             C 0 C 0
s saiBol1.JH378327            40958 29 -    750284 GTGATTCTTTCCGAAGAGGACatcttggc
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     480933 15 -    486031 I
e cebCap1.NW_016107755v1    1292333 12 -   1771730 I
e calJac3.chr4             30876164 757 + 171630274 I
e colAng1.NW_012115577v1     710516 12 -   1829203 I
e manLeu1.NW_012106264v1      53036 12 +    779361 I
e chlSab2.chr17            30059142 12 -  71996105 I
e cerAty1.NW_012002513v1      18913 28 -    811324 I
e macNem1.NW_012012100v1     785440 552 +   1495729 I
e rheMac8.chr4             31212019 12 + 172585720 I
e nomLeu3.chr1a            75293397 1724 + 122973662 I
e panPan2.chr6             31113527 583 + 173848474 I

a score=7896.000000
s hg38.chr6_GL000254v2_alt  1843442 3 +   4827813 tct
s panTro5.chr6             30690492 3 + 175400573 tct
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     619717 3 +   2037526 tct
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31212031 3 + 172585720 TCT
i rheMac8.chr4             I 12 C 0
s chlSab2.chr17            30059154 3 -  71996105 tct
i chlSab2.chr17            I 12 C 0
s manLeu1.NW_012106264v1      53048 3 +    779361 tct
i manLeu1.NW_012106264v1   I 12 C 0
s colAng1.NW_012115577v1     710528 3 -   1829203 tct
i colAng1.NW_012115577v1   I 12 C 0
s cebCap1.NW_016107755v1    1292345 3 -   1771730 tct
i cebCap1.NW_016107755v1   I 12 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            40987 0 -    750284 C
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     480933 15 -    486031 I
e calJac3.chr4             30876164 757 + 171630274 I
e cerAty1.NW_012002513v1      18913 28 -    811324 I
e macNem1.NW_012012100v1     785440 552 +   1495729 I
e macFas5.chr4             30501494 0 - 170955103 C
e nomLeu3.chr1a            75293397 1724 + 122973662 I
e panPan2.chr6             31113527 583 + 173848474 I

a score=672782.000000
s hg38.chr6_GL000254v2_alt  1843445 174 +   4827813 tggcactccaccacagacttggtatgagatcctggctgagcacttttttttttttttttttt-----------tttttttttttgagacagagtttcgctcttgtttcccaggctggagtgcagtggcatgatcttggctcactgcaacctccgcctcctggattcaagcgattctcctgcctca
s panTro5.chr6             30690495 173 + 175400573 tggcactccaccacagacttggtatgagatcctggctgagcactttttttttttcttttttt-----------tttttttttt-gagacagagtttcgctcttggttcccaggctggagtgcagtggcatgatcttggctcactgcaacctccacctcctggattcaagtgattctcctgcctca
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     619720 156 +   2037526 tggcactccaccacagacttggtatgagatcctggctgagcactttttttttttt-----------------------------gagacagagtttcgctcttgtttcccaggctggagtgcagtggcatgatcttggctcactgcaacctccgcctcctggattcaagtgattctcctgcctca
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31212034 184 + 172585720 TGGCACTCCACCACAGACTTGGTATGACATCCTGGCTGAGCACTTTCTTTTTTCtttttttcttttctttttttttttttttt-gagacagagtttcgctcttgtttcccgggctggagtgcaatggggtgatcttggctcactgcaacctctgcctcctgggttcaagcgattctcctgcctca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30501494 180 - 170955103 ----ACTCCACCACAGACTTGGTATGACATCCTGGCTGAGCACtttcttttttcttttttccttttttttttttttttttttt-gagacagagtttcgctcttgtttcccgggctggagtgcaatggggtgatcttggctcactgcaacctccgcctcctgggttcaagcgattctcctgcctca
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            30059157 173 -  71996105 tggcactccaccacagacttggtatgacatcctggctgagcactttcttttttctttttttc-----------tttttttttt-gagacagagtttcgctcttgtttcccgggctggagtgcaatggggtgatcttggctcactgcaacctccgcctcctgggttcaagcgattcttctgcctca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      53051 182 +    779361 tggcactccaccacagacttggtatgacatcctggctgagcactttcttttttcttttttccttt--tttttttttttttttt-gagacagagtttcgctcttgtttcccgggctggagtgcaatggggtgatcttggctcactgcaacctccgcctcctgggttcaagcgattctcctgcctca
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     710531 183 -   1829203 tggcactccaccacagacttggtatgagatcctggctgagcactttcttttttctttttcttttt-cttcttttttttttttt-gagacagagtttcgctcttgtttcccgggctggagtgcaatggcgtgatcttggctcactgcaacctccgcctcctgggttcaagcgattctcctgcctca
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            40987 155 -    750284 ----actgcaccacagacctggtatgagatcctggctgagcc----ccttttt--------------------tttttttttt-gagacggagtttcacccttgttgcccaggctggagtgccgtggcatgacctcggctcat-ccaacctccggctcccgagttcaagcaatgctcctgcctca
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1292348 161 -   1771730 tggcactccaccacagacttggtatgtgatactggctgagccttttttttttt--------------------tttttttttt-ga---ggagtttcacccttgttgcccaggctggagtgcagtggcgcgatcttggctcatcccaacctccgcctcctgggttcaagcaatgctcctgcctca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     480948 160 -    486031 TGGCActccaccacagacttggtatgagatcctggctgagcc----ctttatt--------------------tttttctttt-gagatggagtttcgcccttgttgcccaggctggagtgcagtggtgcgatctcagctcatcccaacctctgcctcccaggttcaagcaatgctcctgcctca
i aotNan1.NW_018496901v1   I 15 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e calJac3.chr4             30876164 757 + 171630274 I
e cerAty1.NW_012002513v1      18913  28 -    811324 I
e macNem1.NW_012012100v1     785440 552 +   1495729 I
e nomLeu3.chr1a            75293397 1724 + 122973662 I
e panPan2.chr6             31113527 583 + 173848474 I

a score=28956.000000
s hg38.chr6_GL000254v2_alt  1843619 8 +   4827813 gcctacgg
s panTro5.chr6             30690668 8 + 175400573 gcctaccg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31114110 8 + 173848474 gcctaccg
i panPan2.chr6             I 583 C 0
s gorGor5.CYUI01015528v1     619876 8 +   2037526 gcctaccg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31212218 8 + 172585720 gtccccca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30501674 8 - 170955103 gtccccca
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            30059330 8 -  71996105 gtctccca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      53233 8 +    779361 gtctccca
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     710714 8 -   1829203 gcctccca
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            41142 8 -    750284 gcctcctg
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1292509 8 -   1771730 gcctcctg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     481108 8 -    486031 gcctccca
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e calJac3.chr4             30876164 757 + 171630274 I
e cerAty1.NW_012002513v1      18913 28 -    811324 I
e macNem1.NW_012012100v1     785440 552 +   1495729 I
e nomLeu3.chr1a            75293397 1724 + 122973662 I

a score=58128.000000
s hg38.chr6_GL000254v2_alt  1843627 8 +   4827813 agtagctg
s panTro5.chr6             30690676 8 + 175400573 agtagctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31114118 8 + 173848474 agtagctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     619884 8 +   2037526 agtagctg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31212226 8 + 172585720 agtagctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30501682 8 - 170955103 agtagctg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      18941 8 -    811324 agtagctg
i cerAty1.NW_012002513v1   I 28 C 0
s chlSab2.chr17            30059338 8 -  71996105 agtagctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      53241 8 +    779361 agtagctg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     710722 8 -   1829203 agtagctg
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            41150 8 -    750284 agtagctg
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1292517 8 -   1771730 agtagctg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     481116 8 -    486031 agtagccg
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e calJac3.chr4             30876164 757 + 171630274 I
e macNem1.NW_012012100v1     785440 552 +   1495729 I
e nomLeu3.chr1a            75293397 1724 + 122973662 I

a score=163478.000000
s hg38.chr6_GL000254v2_alt  1843635 29 +   4827813 ggattacaggcatg-tgccatc---acgcccc-g
s panTro5.chr6             30690684 29 + 175400573 ggattacaggcatg-tgccatc---acgcccc-g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31114126 29 + 173848474 ggattacaggcatg-tgccatc---acgcccc-g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     619892 29 +   2037526 ggattacaggcatg-tgccatc---acgcccc-a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75295121 33 + 122973662 ggactgccagcatgctgtcacctcAACGCCCC-G
i nomLeu3.chr1a            I 1724 C 0
s rheMac8.chr4             31212234 29 + 172585720 ggattaaaggcatg-cgccatc---acgcccc-g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30501690 29 - 170955103 ggattaaaggcatg-cgccatc---acgcccc-g
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      18949 29 -    811324 ggattaaaggcata-tgccatc---acgcccc-g
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30059346 29 -  71996105 ggattaaaggcatg-tgccatc---acgcccc-g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      53249 29 +    779361 ggattaaaggcata-tgccatc---acgcccc-g
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     710730 29 -   1829203 ggattacaggcatg-cgccatc---acgcccc-a
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            41158 28 -    750284 ggattataggcatg-tgctgcc---atgccca--
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1292525 28 -   1771730 ggattataggcatg-cgccgcc---atgccca--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     481124 29 -    486031 ggattataggcatg-caccgcc---atgcccag-
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e calJac3.chr4             30876164 757 + 171630274 I
e macNem1.NW_012012100v1     785440 552 +   1495729 I

a score=2119988.000000
s hg38.chr6_GL000254v2_alt  1843664 278 +   4827813 gctgattttgtacctttagtaaagacggggtttctccatgttggtcaggctggtctcgaactcccgacctcaggtgatccacacaccttggcctc-ccaaagtgctgggattacaggcgtgagccaacgcacccagcctggctgagcactttcaagtctcattcctaacatctgtcagttaagctgggata--------------------acaattatctgactgactgcacggaattctgaatgaattgaattggataatacatgtaaaTCCTTGT-GGTGGGAATTTGGGTGCCATT-
s panTro5.chr6             30690713 278 + 175400573 gctgattttgtacctttagtaaagacggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtgatccacacaccttggcctc-ccaaagtgctgggattacaggcgtgagccaacgcacccagcctggctgagcactttcaagtctcattcctaacatctgtcagttaagctgggata--------------------acaattatctgactgactgcaccgaattctgaatgaattgaattggataatacatgtaaaTCCTTGT-GGTGGGAATTTGGGTGCCATT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31114155 278 + 173848474 gctgattttgtacctttagtaaagacggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtgatccacacaccttggcctc-ccaaagtgctgggattacaggcgtgagccaacgcacccagccTGGCTGAGCActttcaagtctcattcctaacatctgtcagttaagctgggata--------------------acaattatctgactgactgcaccgaattctgaatgaattgaattggataatacatgtaaaTCCTTGT-GGTGGGAATTTGGGTGCCATT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     619921 277 +   2037526 gctgattttgtacctttagtaaagatggggtttctccatgttggtcaggctggtct-gaactcccgacctcaggtgatccacacaccttggcctc-ccaaagtgctgggattacaggcgtgagccaacgcacccagcctggctgagcactttcaagtctcattcctaacatctgtcagttaagctgggata--------------------acaattatctgactgactgcacggaattctgaatgaattgaattggataatacatgtaaaTCCTTGT-GGTGGGAATTTGGGTGCCATT-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75295154 278 + 122973662 GCTGATTTTGTACCTTTAGtaaagacggggtttctccatgttggtcaggctggtctcgaactaccgacctcaggtgatccacccaccttggcctc-ccaaagtgctgggattacaggcgtgagccaccgcacccagccTGGCTGAGCActttcaagtctcattcctaacatctgtcagttaagctgggata--------------------acaattatctgactgacttcacggaattctgaatgaactgaattgaataatacatgtaaaTCCTTGT-GGTGGGAATTTGGGTGCCATT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31212263 267 + 172585720 gctgattttgtatctttagtaaagatggggtttatccatattggtcaggctggtctccaactcacgacctcaggtgatccacccaccttggcctc-ccgaagtgctgggattacaggcgtgggcgaccgcgcGGAGCCTGGCTGAGCACTTTCAAGTC----TCTTAACATCTGTTAGTTAAGCTGGGA---------------------------TAACTGACTGACTTCACGGAATTCTGAATGAATTGAATTGGATAATACATGTAAATCTTTGT-AGTGGGAATTTGGGTGCCATT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30501719 271 - 170955103 gctgattttgtatctttagtaaagatggggtttatccatgttggtcaggctggtctccaactcacgacctcaggtgatccacccaccttggcctc-ccaaagtgctgggattacaggagtgggtgaccgcgccgagccTGGCTGAGCACTTTCAAGTCTGGTTCCTAACATCTGTTAGTTAAGCTGGGA---------------------------TAACTGACTGACTTCATGGAATTCTGAATGAATTGAATTGGATAATACATGTAAATCTTTGT-AGTGGGAATTTGGGTGCCATT-
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      18978 271 -    811324 gctgattttgtatctttagtaaagatggggtttatccatgttggtcaggctggtctccaactcacgacctcaggtgatccacccaccttggcctc-ccgaagtgctgggattacaggagtgggtgaccgcgccgagccTGGCTGAGCACTTTCAAGTCTGGTTCCTAACATCTGTTAGTTAAGCTGGGA---------------------------TAACTGACTGACTTCATGGAATTCTGAATGAATTGAATTGGATAATACATGTAAATCTTTGT-AGTGGGAATTTGGGTGCCATT-
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30059375 271 -  71996105 gctgattttgtatttttagtaaagatggggtttatccatgttggtcaggctggtctccaactcacgacctcaggtgatccacccaccttggcctc-ccaaagtgcagggattacaggcatgggcgaccgcgctgagcctggctgagcactttcaagtctcgttcctaacatctgttagttaagctggga---------------------------taactgactgacttcacggaattctgaatgaattgaattggataatacatgtaaaTCTTTGT-AGTGGGAATTTGGGTGCCATT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      53278 271 +    779361 gctgattttgtatctttagtaaagatggggtttatccatgttggtcaggctggtctccaactcacgacctcaggtgatccacccaccttggcctc-ccgaagtgctgggattacaggagtgggtgaccgcgccgagcctggctgagcactttcaagtctggttcctaacatctgttagttaagctggga---------------------------taactgactgacttcatggaattctgaatgaattgaattggataatacatgtaaaTCTTTGT-AGTGGGAATTTGGGTGCCATT-
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     710759 278 -   1829203 gctgattgtgtatctttagtaaagatggggtttctccatgttggtcaggctggtctcaaactcacaacctcgggtgatccacccaccttggcctc-ccaaagtgctgggattacaggcgtgggcgaccgcgcccagcctggctgagcactttcaagtctccttcctaacatctgttagttaagctggaata--------------------acaattaactgactgacttcacggaattctgaatgaattgaattggataatacatgtaaaTCTTTGT-AGTGGGAATTTGGGTGCCATT-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30876921 258 + 171630274 GCTGGttttgtatttttggtagagacagggtttctccatgttggttaggtt---------------------ggtgatctgcccacctcaccctc-ctaaaatgctgggattacaggcaggagccactgcacctggccTGGctgagcattttcaagtctcattcctaacatctgtcagttaagctgggata--------------------acaattatctgactgacttcacagaattctgaatgaattgaattggataatacacgtaaaTCTGTGT-AGTGGGTATTTGGGTGGTGGTT
i calJac3.chr4             I 757 C 0
s saiBol1.JH378327            41186 277 -    750284 gctggttttgtatatttggtagagacagggtttctcaatgttggtcaggctggtctcgaactcccgacctcaggtgatctgcctgccttggcctc-ctaaaatgctggaattacaggcgggagccactgtgcctggcctggctgagtactttcaagtctcattcctaatatctgtcagttaagctgggat-----------------------aattatctgactgatttcacagaattctaaatgaattaaattggataatacatgtaaaTCTGTGTAAGCTGGAATTTGGGTGGTTTTT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1292553 299 -   1771730 gctggttttgtatttttgttagagaccaggtttctccatgttggtcaggctggtctcaaactcctgacctcaggtgatctgcctgcctcgccctc-ctaaaacgctgggattacaggcaggagccaccgtgcctggcctggctgagcactttcaagtctcattcctaacatctatcagttgagctgggataacaattatctgactgatttcacagTTATCTGACTGACTTCACAGAATCCTAAATGAATTGAATTGAATAATACACGTAAATCTTTAT-AGTGGGAATTTGGGTGGTTTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     481153 262 -    486031 -atggttttgtatttttggtagagacggggtttc----------------tggtctcgaactcccgacctcaggtgatctgcccacttcaccctctttaaaatgctgggattacaggcgggagccactgtgcctggcctggctgagcactttcaagtctcattcctaacatctgtcagttaagctgggata--------------------acaattatctgactgacttcacagaattctaaatgaattgaattggataatacacgtaaaTCTGTGT-AGTGGGAATTTGGGTGGT-TTT
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e macNem1.NW_012012100v1     785440 552 +   1495729 I

a score=295590.000000
s hg38.chr6_GL000254v2_alt  1843942 27 +   4827813 TTCTTTGCATTATGAAAATCCAGGTCA
s panTro5.chr6             30690991 27 + 175400573 TTCTTTGCATTATGAAAATCCAGGTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31114433 27 + 173848474 TTCTTTGCATTATGAAAATCCAGGTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     620198 27 +   2037526 TTCTTTGCATTATGAAAATCCAGGTCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75295432 27 + 122973662 TTCTTTGCATTATGAAAATCCAAGTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31212530 27 + 172585720 TTCTTTGCATTATGAAAATCTAGGTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30501990 27 - 170955103 TTCTTTGCATTATGAAAATCCAGGTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     785992 27 +   1495729 TTCTTTGCATTATGAAAATCCAGGTCA
i macNem1.NW_012012100v1   I 552 I 369
s cerAty1.NW_012002513v1      19249 27 -    811324 TTCTTTGCATTATGAAAATCCAGGTCA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30059646 27 -  71996105 TTCTTTGCATTATGAAAATCCAGGTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      53549 27 +    779361 TTCTTTGCATTATGAAAATCCAGGTCA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     711037 27 -   1829203 TTCTTTGCATTATGAAAATCCAGGTCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30877179 27 + 171630274 TTCTTTGCATTAAGAAAATCCAGGTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            41463 27 -    750284 TTCTTTGCATTATGAAAATCCAGGTCA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1292852 27 -   1771730 TTCTTTGCGTTATGAAAATCCAGGTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     481415 27 -    486031 TTCTTTGCATTATGAAAATCCAGGTCA
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I

a score=320935.000000
s hg38.chr6_GL000254v2_alt  1843969 36 +   4827813 ACTCTTCTTTCTTCTCCCAATTGTTTTTATTGCACA
s panTro5.chr6             30691018 36 + 175400573 ACTCTTCTTTCTTCTCCCAATTGTTTTTATTGCACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31114460 36 + 173848474 ACTCTTCTTTCTTCTCCCAATTGTTTTTATTGCACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     620225 36 +   2037526 ACTCTTCTTTCTTCTCCCAATTGTTTTTATTGCACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75295459 32 + 122973662 ACTC----TTCTTCTCCCAGTTGTTTTTATTGCACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31212557 36 + 172585720 ACTCTTCTTTTTTCTCCCAATTGTTtttattgcaca
i rheMac8.chr4             C 0 I 2
s macFas5.chr4             30502017 36 - 170955103 ACTCTTCTTTTTTCTCCCAATTGTTTTTATTGCACA
i macFas5.chr4             C 0 I 2
s cerAty1.NW_012002513v1      19276 36 -    811324 ACTCTTCTTTTTTCTCCCAATTGTTTTTATTGCACA
i cerAty1.NW_012002513v1   C 0 M 1475
s chlSab2.chr17            30059673 36 -  71996105 ACTCTTCTTTTTTCTCCCAATTGTTTTTATTGCACA
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012106264v1      53576 36 +    779361 ACTCTTCTTTTTTCTCCCAATTGTTTTTATTGCACA
i manLeu1.NW_012106264v1   C 0 I 2
s colAng1.NW_012115577v1     711064 36 -   1829203 ACTCTTCTTTTTTCTCCCAATTGTTTTTATTGCACA
i colAng1.NW_012115577v1   C 0 I 2
s calJac3.chr4             30877206 36 + 171630274 ACTTTTCTTCCTTCTCCCAATTGTTTTTATTGCACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            41490 36 -    750284 ACTTTTCTTCCTTCTCCCAATTGTTTTTATTGCATA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1292879 36 -   1771730 ACTTTTCTTCCTTCTCCCAATTGTTTTTATTGCACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018496901v1     481442 36 -    486031 ACTTTTCTTCCTTCTCCCAATTGTTTTTATTGCACA
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e macNem1.NW_012012100v1     786019 369 +   1495729 I

a score=84414.000000
s hg38.chr6_GL000254v2_alt  1844005 13 +   4827813 --TCTATAAAAACAA
s panTro5.chr6             30691054 13 + 175400573 --TCTATAAAAACAA
i panTro5.chr6             C 0 I 3
s panPan2.chr6             31114496 13 + 173848474 --TCTATAAAAACAA
i panPan2.chr6             C 0 I 3
s gorGor5.CYUI01015528v1     620261 12 +   2037526 --TCTATAAAAA-AA
i gorGor5.CYUI01015528v1   C 0 I 3
s nomLeu3.chr1a            75295491 13 + 122973662 --TTTATAAAAACAA
i nomLeu3.chr1a            C 0 I 3
s rheMac8.chr4             31212595 13 + 172585720 --actgtaaaaacaa
i rheMac8.chr4             I 2 I 3
s macFas5.chr4             30502055 13 - 170955103 --ACTGTAAAAACAA
i macFas5.chr4             I 2 I 3
s chlSab2.chr17            30059711 13 -  71996105 --ACTGTAAAAACAA
i chlSab2.chr17            I 2 I 3
s manLeu1.NW_012106264v1      53614 13 +    779361 --ACTGTAAAAACAA
i manLeu1.NW_012106264v1   I 2 I 3
s colAng1.NW_012115577v1     711102 13 -   1829203 --ACTGTAAAAACAA
i colAng1.NW_012115577v1   I 2 I 3
s calJac3.chr4             30877242 15 + 171630274 TCACTATAAAAACAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            41526 15 -    750284 TCACTATAAAAACAA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1292915 15 -   1771730 TCACTATAAAAACAA
i cebCap1.NW_016107755v1   C 0 I 675
s aotNan1.NW_018496901v1     481478 15 -    486031 TCACTATAAAAACAA
i aotNan1.NW_018496901v1   C 0 I 3
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e cerAty1.NW_012002513v1      19312 1475 -    811324 M
e macNem1.NW_012012100v1     786019 369 +   1495729 I

a score=17046.000000
s hg38.chr6_GL000254v2_alt  1844018 3 +   4827813 GAA
s panTro5.chr6             30691070 3 + 175400573 GAA
i panTro5.chr6             I 3 C 0
s panPan2.chr6             31114512 3 + 173848474 GAA
i panPan2.chr6             I 3 C 0
s gorGor5.CYUI01015528v1     620276 3 +   2037526 GAA
i gorGor5.CYUI01015528v1   I 3 C 0
s nomLeu3.chr1a            75295507 3 + 122973662 GAA
i nomLeu3.chr1a            I 3 C 0
s rheMac8.chr4             31212611 3 + 172585720 gaa
i rheMac8.chr4             I 3 C 0
s macFas5.chr4             30502071 3 - 170955103 GAA
i macFas5.chr4             I 3 C 0
s chlSab2.chr17            30059727 3 -  71996105 GAA
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012106264v1      53630 3 +    779361 GAA
i manLeu1.NW_012106264v1   I 3 C 0
s colAng1.NW_012115577v1     711118 3 -   1829203 GAA
i colAng1.NW_012115577v1   I 3 C 0
s calJac3.chr4             30877257 3 + 171630274 CAA
i calJac3.chr4             C 0 I 3
s saiBol1.JH378327            41541 3 -    750284 CAA
i saiBol1.JH378327         C 0 I 3
s aotNan1.NW_018496901v1     481496 3 -    486031 GAA
i aotNan1.NW_018496901v1   I 3 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e cerAty1.NW_012002513v1      19312 1475 -    811324 M
e macNem1.NW_012012100v1     786019 369 +   1495729 I

a score=1018057.000000
s hg38.chr6_GL000254v2_alt  1844021 275 +   4827813 AAGAAttttc-ttgc-ttttcttttttttgagacacagtctcgcactgtcgcccaggctggagtgcaatggcacaacctctgctcactgcaaactctgcctcctgggttcatgccattctcctgcctcagcctcctgagtagctgggattacaggtgcatgccaccacgcccagaaaattttttgtatttttagtagagacgaggtttcaccgtgtt-agccaggatggtctcaatctcctgtcctcatgatctgcccacctccggctcccaaagtgc
s panTro5.chr6             30691073 275 + 175400573 AAGAAttttc-tttc-ttttcttttttttgagacacagtctcgcactgtcgcccaggctggagtgcaatggcacaacctctgctcactgcaaactctgcctcctgggttcatgccattctcctgcctcagcctcctgagtagctgggattacaggtgcatgccaccacgcccagaaaattttttgtatttttagtagagacgaggtttcaccgtgtt-agccaggatggtctcaatctcctgtcctcgtgatctgcccgcctcgggctcccaaagtgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31114515 275 + 173848474 AAGAAttttc-tttc-ttttcttttttttgagacacagtctcgcactgtcgcccaggctggagtgcaatggcacaacctctgctcactgcaaactctgcctcctgggttcatgccattctcctgcctcagcctcctgagtagctgggattacaggtgcatgccaccacgcccagaaaattttttgtatttttagtagagacgaggtttcaccgtgtt-agccaggatggtctcaatctcctgtcctcgtgatctgcccgcctcgggctcccaaagtgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     620279 274 +   2037526 AAGAAttttc-tttc-ttttcttttttttgagacacagtctcgcactgtcgcccaggctggagtgcaatggcacaacctctgctcactgcaaactctgcctcctgggttcatgccattctcctgcctcagcctcctgagtagctgggattacaggtgcatgccaccatacccagaaaattttttgtattttt-gtagagacgaggtttcaccgtgtt-agccaggatggtctcaatctcctgtcctcgtgatctgcccgcctcgggctcccaaagtgc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75295510 272 + 122973662 AATAAtttt-----c-ttttcttttctttgagacacagtctcgcactgtcgcccaggctggagtgcaatggcacaacctctgctcactgcaaactctgcctcctgggttcatgccattctcctgcgtcagcctcctgagtagctgggattacaggtgcatgccaccatgccgagataattttttgtatttttagtagagacaaggtttcaccgtgttaagtcaggatggtctcaatctcatgtcctcgtgatctgcctgcctcggcctcccaaagtgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31212614 277 + 172585720 aataattttcttttctttttttttttcttgagacagagtctcgcactgtcgcccaggctggagtgcagtggcacaacttcggctcactgcaagctccacctcccgggttcgtgccattctcctgcctcagcctcctgagtagctgggactgcaggcgcccgccaccacgcccggctaattttttgtatttttagtagagacggggtttcaccgtgtt-agccaggatggtctcaatctcctgacctcgtgatctgcccgcctcggccacccaaagtgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30502074 276 - 170955103 AATAAttttcttttc-ttttttttttcttgagacagagtctcgcactgtcgcccaggctggagtgcagtggcacaactttggctcactgcaagctccgcctcccaggttcgtgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccaacaccacgcccggctaattttttgtatttttagtagagacggggtttcaccgtgtt-agccaggatggtctcaatctcctgacctcgtgatctgcccgcctcggccacccaaagtgc
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            30059730 276 -  71996105 AATAAttttcttttc-ttttttttttcttgagacagagtctcgcactgtcgcccaggctggagtgcagtggcgcaacttcggctcgctgcaagctccgcctcccgggttcgtgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccaccacgcccggctaattttttgtatttttagtagagacggggtttcaccgtgtt-agccaggatggtctcaatctcctgacctcgtgatctgccctcctcggccacccaaagtgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      53633 276 +    779361 AATAAttttcttttc-ttttttttttcttgagacagagtctcgcactgtcgcccaggctggagtgcagtggcacaactttggctcactgcaagctccacctcccgggttcgtgccattctcctgcctcagcctcctgagtagctgggactacaggtgcccaccaccacgcccggctaattttttgtatttttagtagagatggggtttcaccatgtt-agccaggatggtctcaatctcctgacctcgtgatccacccgcctcggccacccaaagtgc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     711121 276 -   1829203 AATAAttttcttttc-ttctttttttcttgagacagagtctcctactgtctcccaggctggagtgcagtggcgcaacttcggctcactgcaagctccgcctcccgggttcgtgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcccgactaattttttgtatttttagtagagacggggtttcaccgtgtt-agccaggatggtctcaatctcctgacctcgtgatctgcccgcctcggccacccaaagtgc
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            41544   3 -    750284 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     481499   0 -    486031 C
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e calJac3.chr4             30877260   3 + 171630274 I
e cerAty1.NW_012002513v1      19312 1475 -    811324 M
e macNem1.NW_012012100v1     786019 369 +   1495729 I

a score=157403.000000
s hg38.chr6_GL000254v2_alt  1844296 33 +   4827813 tgggattacagtcatgagccaccgcgcctggcc
s panTro5.chr6             30691348 33 + 175400573 tgggattacagtcatgagccaccgcgcctggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31114790 33 + 173848474 tgggattacagtcatgagccaccgcgcctggcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     620553 33 +   2037526 tgggattacagtcatgagccaccgcgcctggcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75295782 33 + 122973662 tgggattacagtcatgagccaccgcgcccggcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31212891 33 + 172585720 tgggattacagtaatgagccaccgcgcctggcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30502350 33 - 170955103 tgggattacagtaatgagccaccgcgcctggcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     786388 33 +   1495729 tgggattacagtaatgagccaccgcgcctggcc
i macNem1.NW_012012100v1   I 369 C 0
s chlSab2.chr17            30060006 33 -  71996105 tgggattacagtaatgagccaccgcgcctggcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      53909 33 +    779361 tgggattacagtaatgagccaccgcgccgggcc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     711397 32 -   1829203 tgggattagagtaatgagccactgcgcc-ggcc
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            41544  3 -    750284 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e aotNan1.NW_018496901v1     481499  0 -    486031 C
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e calJac3.chr4             30877260  3 + 171630274 I
e cerAty1.NW_012002513v1      19312 1475 -    811324 M

a score=42224.000000
s hg38.chr6_GL000254v2_alt  1844329 5 +   4827813 AAGAA
s panTro5.chr6             30691381 5 + 175400573 AAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31114823 5 + 173848474 AAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     620586 5 +   2037526 AAGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75295815 5 + 122973662 AAGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31212924 5 + 172585720 aagaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30502383 5 - 170955103 AAGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     786421 5 +   1495729 AAGAA
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30060039 5 -  71996105 AAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      53942 5 +    779361 AAGAA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     711429 5 -   1829203 AAGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30877263 5 + 171630274 AAGAA
i calJac3.chr4             I 3 C 0
s saiBol1.JH378327            41547 5 -    750284 AAGAA
i saiBol1.JH378327         I 3 C 0
s aotNan1.NW_018496901v1     481499 5 -    486031 AAGAA
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           640361 22726 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e cerAty1.NW_012002513v1      19312 1475 -    811324 M

a score=1540645.000000
s hg38.chr6_GL000254v2_alt  1844334 192 +   4827813 TTTTCTAATAAACAAGA----------------------------------------------------------------AAAACCTCACCTGTAATCCCACTACTTGGTACAATAATCATACTTATTTTTCTTTATTTCCTTCCAGTGTGAGCAAGGACAATTTAGCTTTGGGAACCCACA-AAGAAACCATTTCAATTAAAAGCACAGGAAGCCCCACCAGTCCCATGAGGTTTTTGCCACCCCTAAGTAGTTC
s panTro5.chr6             30691386 192 + 175400573 TTTTCTAATAAACAAGA----------------------------------------------------------------AAAACCTCACCTGTAATCCCACTACTTGGTACAATAATCATACTTATTTTTCTTTATTTCCTTCCAGTGTGACCAAGGACAGTTTAGCTTTGGGAACCCACA-AAGAAACCATTTCAATTAAAAGCACAGGAAGCCCCACCAGTCCCATGAGGCTTTTGCCACCCCTAAGTAGTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31114828 192 + 173848474 TTTTCTAATAAACAAGA----------------------------------------------------------------AAAACCTCACCTGTAATCCCACTACTTGGTACAATAATCATACTTATTTTTCTTTATTTCCTTCCAGTGTGACCAAGGACAGTTTAGCTTTGGGAACCCACA-AAGAAACCATTTCAATTAAAAGCACAGGAAGCCCCACCAGTCCCATGAGGCTTTTGCCACCCCTAAGTAGTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     620591 190 +   2037526 TTTTCTAATAAACAAGA----------------------------------------------------------------AAAACCTCACCTGTAATCCCACTACTTGGTACAATAATCATAC-TATTTTTCTTTATTTCCTTCCAGTGTGACCAAGGACAGTTTAGCTTTGGGAACCCACA-AAGAAACCATTTCAATTAAAAGCACAGGAAGCCCCACCAGTCCCATGA-GCTTTTGCCACCCCTAAGTAGTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75295820 187 + 122973662 TTTTCTAAT----AAGA----------------------------------------------------------------AAAACCTCACCTGCAATCCCACTACTTGGTACAATAATCATACTTATTTTTCTTTATTTCCTTCCAGTGTGACCAAGGACAGTTTAGCTTTGGGAACCCACA-AAGAAACCATTTCAATTAAAAGCACAGGAAG-CCCACCAGTCCCACGAGGCTTTTGCCACCCCTAAGTAGTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31212929 192 + 172585720 ttttctaataaacaaga----------------------------------------------------------------aaaacctcacctgcaatcccactacttggtaaaataatcatacttatttttctttatttccttccagtGTGACCAAGGACAGTTTAGCTTTGGGAATCCACA-AAGAAATCATTTCAATTAAAAGCACAGGAAACCCCACCAGTCCCACGAGACTTTTGCCGCCCCTAAGTAGTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30502388 192 - 170955103 TTTTCTAATAAACAAGA----------------------------------------------------------------AAAACCTCACCTGCAATCCCACTACTTGGTACAATAATCATACTTATTTTTCTTTATATCCTTCCAGTGTGACCAAGGACAGTTTAGCTTTGGGAATCCACA-AAGAAATCATTTCAATTAAAAGCACAGGAAACCCCACCAGTCCCACGAGACTTTTGCCGCCCCTAAGTAGTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     786426 192 +   1495729 TTTTCTAATAAACAAGA----------------------------------------------------------------AAAACCTCACCTGCAATCCCACTACTTGGTACAATAATCATACTTATTTTTCTTTATATCCTTCCAGTGTGACCAAGGACAGTTTAGCTTTGGGAATCCACA-AAGAAATCATTTCAATTAAAAGCACAGGAAACCCCACCAGTCCCACGAGACTTTTGCCGCCCCTAAGTAGTCC
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30060044 191 -  71996105 TTTTCTAATAAACAAGA----------------------------------------------------------------AAAACCTCACCTGCAATCCCACTACTTGGTACAATAATCATACTTATTTTTCTTTATTTCCTTCCAGTGTGACCAAGGACAATTTAGCTTTGGGAACCCACA-AAGAAATCATTTCAATTAAAAGCACAGGAAACCCCACCA-TCCCACGAGGTTTTTGCCGCCCCTAAGTAGTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      53947 191 +    779361 TTTTCTAATAAACAAGG----------------------------------------------------------------AAAACCTCACCTGCAATCCCACTACTTGGTAAAATAATCATACTTATTTTTCTTTATTTCCTTCCAGTGTGACCAAGGACAATTTAGCTTTGGGAACCCACA-AAGAAATCATTTCAATTAAAAGCACAGGAAACCCTACCA-TCCCACGAGGCTTTTGCCGCCCCTAAGTAGTTC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     711434 256 -   1829203 TTTTCTAATAAACAAGAAAAACCGGCCGGGccagcctgggtgacagagcaagactccgtctcaaaaaaacaaaagacaaGGAAAACCTCAGCTGCAATCCCACTATTTGGTACAATAATCATACTTATTTTTCTTTATTTCCTTCCAGTGTGACCAAGGACAGTTTAGCTTTGGGAACCCACA-AAGAAATCATTTCAATTAAAAGTACAGGAAACCCCACCAGTCCCACGAGGCTTTTGCCGCCCCTAAGTAGTCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30877268 193 + 171630274 TTTTCTAATAAACAAGA----------------------------------------------------------------AAAACCTCACTTGCAATTCCACTACTTGGTACAATCATCATACTTACTTTTCTTTATTTCCTTCCGGTGTGACCAAGGACTGTTTAGCTTTGGGAACTCACACGGAAACCCATTTCAATTAAAAGCACGGGGAGCCCCATCAGTCCCATGAGGCTTTTGCCACCCCTAAGTAGTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            41552 183 -    750284 TTTTCTAATAAACAAGA----------------------------------------------------------------AAAACCTCACTTGCAATTCCACTACTTGGTACAATAATCATA---------CTTTATTTCCTTCTGGTGTGACCAAGAACTGTTTAGCTTTGGGAACCCACA-AAAAAACCATTTCAATTAAAAGCACGGGAAGCCGCATCAGTCCCATGAGGCTTTTGCCACCCCTAAGTAGTTC
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018496901v1     481504 192 -    486031 TTTTCTAGTAAACAAGA----------------------------------------------------------------AAAACCTCACTTGCAATTCCACTACTTGGTACAATAATCATACTTACTTTTCTTTATTTCCTTCCGGTGTGACCAAGGAATGTTTAGTTTTGGGAACCCACA-AAGAAACCACTTCAATTAAAAGCACAGGAAGCCCCATCAGTCCCATGAGGCTTTTGCCACCCCTGAGTAGTTC
i aotNan1.NW_018496901v1   C 0 C 0
s otoGar3.GL873550           663087 189 +  18854210 TTTTGTAATAAAAAAGA----------------------------------------------------------------AAATAGTCACCTGCAATC---CTGCCTGACACAGTAATTTTACTTAAATTTTTTTAT-TCTTTCCAGCGTGACCAAGATTGGTTTGACTTTGGGAACCTGCGTGGAAAAACATTTCAGCTAAAAGTGCAGGAAGCCCCACCAATCCCTTGAGAGTTTTGCCTTTCTTAAGGAGCTC
i otoGar3.GL873550         I 22726 I 163
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e cerAty1.NW_012002513v1      19312 1475 -    811324 M

a score=855999.000000
s hg38.chr6_GL000254v2_alt  1844526 124 +   4827813 CATATGAGAAATTAAGAGTAGCGATGCTTGCTTTGAGGAATTGGAGGGAAAACTAAAATGAAAGTTGAATTTGGATAAGAGAAAAAT-CAAGGGCACTCACTCTTCCCA-ACCCCAGCCTGTCTGA
s panTro5.chr6             30691578 124 + 175400573 CATATGAGAAATTAAGAGTAGCGATGCTTGCTTTGAGGAATTGGAGGGAAAACTAAAATGAAAGTTGAATTTGGATAAGAGAAAAAT-CAAGGGCACTCACTCTTCCCA-ACCCCAGCCTGTCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31115020 124 + 173848474 CATATGAGAAATTAAGAGTAGCGATGCTTGCTTTGAGGAATTGGAGGGAAAACTAAAATGAAAGTTGAATTTGGATAAGAGAAAAAT-CAAGGGCACTCACTCTTCCCA-ACCCCAGCCTGTCTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     620781 123 +   2037526 CATATGAGAAATTAAGAGTAGCGATGCTTGCTTTGAGGAATTGGAGGGAAAACTAAAATGAAAGTTGAATTTGGATAAGAGAAAAAT-CAAGGGCAC-CACTCTTCCCA-ACCCCAGCCTGTCTGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75296007 115 + 122973662 CATATGAGAAATTAAGAGTAGCGATGCTTGCTTTGAGGAA-TGGAGGGAAAACTAAAATGAAAGTTGAATTTGGATAAGAGAAAAAT-CAAGGGCACTCACTCCTCCCA-ACCCCA--------GA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31213121 124 + 172585720 TGTATGAGAAATTAAGAGTATCGATGCTTGCTTTGAACAGTTGGAGGGAAATCTAAAATGAAAGTTGAATTTGGGTAAGAGAAAAAT-CAAGGGCACTCACTCCTCCCA-ACCCCAGCCCGTCTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30502580 124 - 170955103 TGTATGAGAAATTAAGAGTATCGATGCTTGCTTTGAACAGTTGGAGGGAAATCTAAAATGAAAGTTGAATTTGGGTAAGAGAAAAAT-CAAGGGCACTCACTCCTCCCA-ACCCCAGCCCGTCTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     786618 124 +   1495729 TGTATGAGAAATTAAGAGTATCGATGCTTGCTTTGAACAGTTGGAGGGAAATCTAAAATGAAAGTTGAATTTGGGTAAGAGAAAAAT-CAAGGGCACTCACTCCTCCCA-ACCCCAGCCCGTCTGG
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30060235 124 -  71996105 CGTATGAGAAATTAAGAGTAGCGATGCTTGCTTTGAAGAGTTGGAGGGAAATCTAAAATGAAAGTTGAATTTGGATAAGAGAAAAAT-CAAGGGCACTCACTCCTCCCA-ACCCCAGCCCGTCTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      54138 124 +    779361 CGTATGAGAAATTAAGAGTAGCGATGCTTGCTTTGAAGAGTTGGAGGGAAATCTAAAATGAAAGTTGAATTTGGATAAGAGAAAAAT-CAAGGGCACTCACTCCTCCCA-ACCCCAGCCTGTCTGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     711690 124 -   1829203 CGTATGAGAAATTAAGAGTAGCGATGCTTGCTTTGAACAGTTGGAGGGAAATCTAAAATGAAAGTTGAATTTGGATAAGAGAAAAAT-CAAGGGCACTCACTCCTCCCA-ACCCCAGCCCGTCTGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30877461 126 + 171630274 CATATGAGAAAGTAAGAGTAGCAATGCTTGCTTTGAAGAGTTGGAGGGAAAACTGAAATGAAAGTTGAATTTGGATAGGAGAAAAATGCAAGCGCACTCACTCCTCCCATTTCCCAGCCTGTTTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            41735 113 -    750284 CATATGAGAAAGTAAGAGTAGTGATGCTTGA---AGAGAGTTGGAGGGAAAAT----------GTTGAATTTGGATAAGAGAAAAATGCAAGGGCCCTCACTCCTCCCGTTCCCCAGCCTGTCTGA
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018496901v1     481696 126 -    486031 CATATGAGAAAGTAAGAGTAGTGATGCTTGCTTTGAAGATTTGGAGGGAAAACTGAAAGGAAAGTTGAATTTGGATAACAGAAAAATGCAAGGGCACTCACTCCTCCTGTTCCCCAGTCTGTTTGA
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           663276 163 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e cerAty1.NW_012002513v1      19312 1475 -    811324 M

a score=4078215.000000
s hg38.chr6_GL000254v2_alt  1844650 496 +   4827813 CTCTCTCCCCATCATCCTCCTCACTACTTTCAGGCAGGGT-GGAGATAGCAC-CAGGGGGAGATTCTGGGAGACAGGGCACTACTGCAAGAACAGCAGGACAGCCCCACTGGTGGCTGTGGGATGCTCCGTGGCCCTGCCTACTGCTGTTCTGGAGGATGCACCGCCTCGCTTTCCTTTCTGGTGTTAGAGCCAGGTGACTCTGTCCAAAGAGTAGGTTCTTTTT-CCCCACAGAGGCAAACAGGAAACGTTTCCTTTCCTAACTAGCTCTGCCTAGTGCCTGGAATC----TTACTGAGTCAGTCCCGCAGTAAGTCAGCAGCTCAGGAAAtctaccctctctgagcctccctgcag-ttcaagctgcttagggaacttgatattttcaagacatctgtctac--acatgggcagcccagccgccgagttagtggtggcaaccaA-AGCGAAC----AGAGGACTTGGCTTCCTGAAAACAGAGGCAAAGAAGTATAGCTATCCAACCTT
s panTro5.chr6             30691702 496 + 175400573 CTCTCTCCCCATCATCCTCCTCACTACTTTCAGGCAGGGT-GGAGATAGCAC-CAAGGGGAGATTCTGGGAGACAGGGCACTACTGCAAGAACAGCAGGACAGCCCCACTGGTGGCTGTGGGATGCTCCGTGGCCCTGCCTACTGCTGTTCTGGAGGATGCACCGCCTCGCTTTCCTTTCTGGTGTTAGAGCCAGGTGACTCTGTCCAAAGAGTAGTTTCTTTTT-CCCCGCAGAGGCAAACAGGAAACGTTTCCTTTCCTAACTAGCTCTGTCTAGTGCCTGGAATC----TTACTGAGTCAGTCCCGCAGTAAGTCAGCAGCTCAGGAAGTCTACCCTCTCTGAGCCTCCCTGCAG-TTCAAGCTGCTTAGGGAACTTGATATTTTCAAGACATCTGCCTAC--ACATGGGCAGCCCAGCCACCAAGTTAGTGGTGGCAACCAA-AGCGAAC----AGAGGACTTGGCTTCCTGAAAACAGAGGCAAAGAAGTATAGCTATCCAACCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31115144 496 + 173848474 CTCTCTCCCCATCATCCTCCTCACTACTTTCAGGCAGGGT-GGAGATAGCAC-CAAGGGGAGATTCTGGGAGACAGGGCACTACTGCAAGAACAGCAGGACAGCCCCACTGGTGGCTGTGGGATGCTCCGTGGCCCTGCCTACTGCTGTTCTGGAGGATGCACCGCCTCGCTTTCCTTTCTGGTGTTAGAGCCAGGTGACTCTGTCCAAAGAGTAGTTTCTTTTT-CCCCGCAGAGGCAAACAGGAAACGTTTCCTTTCCTAACTAGCTCTGTCTAGTGCCTGGAATC----TTACTGCGTCAGTCCCGCAGTAAGTCAGCAGCTCAGGAAGTCTACCCTCTCTGAGCCTCCCTGCAG-TTCAAGCTGCTTAGGGAACTTGATATTTTCAAGACATCCGCCTAC--ACATGGGCAGCCCAGCCACCAAGTTAGTGGTGGCAACCAA-AGCGAAC----AGAGGACTTGGCTTCCTGAAAACAGAGGCAAAGAAGTATAGCTATCCAACCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     620904 495 +   2037526 CTCTCTCCCCATCATCCTCCTCACTACTTTCAGGCAGGGT-GGAGATAGCAC-CA-GGGGAGATTCTGGGAGACAGGGCACTACTGCAAGAACAGCAGGACAGCCCCACTGGTGGCTGTGGGATGCTCCGTGGCCCTGCCTACTGCTGTTCTGGAGGATGCACCGCCTCACTTTCCTTTCTGGTGTTAGAGCCAGGTGACTCTGTCCAAAGAGTAGTTTCTTTTT-CCCCGCAGAGGCAAACAGGAAACGTTTCCTTTCCTAACTAGCTGTGTCTAGTGCCTGGAATC----TTACTGAGTCAGTCCCGCAGTAAGTCAGCAGCTCAGGAAAtctaccctctctgagcctccctgcag-ttcaagctgcttagggaacttgatattttcaagacatctgcctac--acatgggcagcccagccgccgagttagtggtggcaaccaA-AGCGAAC----AGAGGACTTGGCTTCCTGAAAACAGAGGCAAAGAAGTATAGCTATCCAACCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75296122 496 + 122973662 CTCTCTCCCCATCATCCTCCTCACTTCTTTCAGGCAGGGT-GGGGATAGCAC-CAGGAGGAGATTCTGGGAGACAGGGCACTCGTGCAAGGACAGCAGGACAGCCCCGCTGGTGGCTGTGGGATGCTCGGTGGCCCTGCCTGCTGCTCTTCTGGAGGATGCACCGCCTCGCTTTCCTTTCTGGCGTTAGAGCCAGGTGACTCTGTCCAAAGAGTAGTTTCTTTTC-CCCCACAGAGGCAAACAGGAAATGTTTCCTTTCCTAACTAGCTCTGTCTAGTGCCTGGAATC----TTACTGAGTCAGTCCCGCAGTAAGTCAGCAGCTCAGGAAATCTCCCCTCTCTGAGTCTCCCTGCAG-TTCAAGCTGCTTAGGGAACTTGATATTTTCAAGACATGTGCCTAC--ACATGGGCAGCCCAGCCGCAGAGCTAGTGGTGGCAACCAA-AGCGAAC----AGAGGACTTGGCTTCCTGAAAACAGAAGCAAAGAAGTATAGCTATCCAAACTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31213245 493 + 172585720 CTCTCTCCCCATCATCCTCCTCACTTCTTTCAGGCAGGGT-GGGGATAGAAC-CAGGAGGAGATTCTGGGAGACAGGGCACTCCTGCAAGGACAGCAGGACAGCTCCGCTGGTGGCCGTAGGATGCTCAGTGGCCCTGCCTGCTGCTCTTCTGGGGGATGCACCGCCTCGCTTTCCTTTCCGGTGCTAGAGCCAGGCGA--CTGTCCGAAGAGTAGTTTCTTTTT-CCCCGCAGAGGCAAACAGGAAATGTTTCCTTTCCTAACTAGCTCTGTCTAGTGCCTGGAATC----TTACTGAGTCAGTCCCGCGGTAAGTCAGCAGCTCAGG-AATCTCCCTTCTCTGAGCCTCCCCGCAG-TTCAAGCTGCTTAGGGAACTTGATATTTTCATGACATCTGCGTAC--ACATGGGCAGCCCAGCTGTAGAGCTAGTGGCGGCAACCAC-AGCGAAC----AGAGGACTCGGCTTCATGAAAACAGAGGCAAAGAAGTATAGCTATTCAAACTT
i rheMac8.chr4             C 0 I 310
s macFas5.chr4             30502704 493 - 170955103 CTCTCTCCCCATCATCCTCCTCACTTCTTTCAGGCAGGGT-GGGGATAGAAC-CAGGAGGAGATTCTGGGAGACAGGGCACTCCTGCAAGGACAGCAGGACAGCTCCGCTGGTGGCCGTAGGATGCTCAGTGGCCCTGCCTGCTGCTCTTCTGGGGGATGCACCGCCTCGCTTTCCTTTCCGGTGCTAGAGCCAGGCGA--CTGTCCGAAGAGTAGTTTCTTTTT-CCCCGCAGAGGCAAACAGGAAATGTTTCCTTTCCTAACTAGCTCTGTCTAGTGCCTGGAATC----TTACTGAGTCAGTCCCGCGGTAAGTCAGCAGCTCAGG-AATCTCCCTTCTCTGAGCCTCCCCGCAG-TTCAAGCTGCTTAGGGAACTTGATATTTTCATGACATCTGCGTAC--ACATGGGCAGCCCAGCTGTAGAGCTAGTGGCGGCAACCAA-AGCGAAC----AGAGGACTCGGCTTCATGAAAACAGAGGCAAAGAAGTATAGCTATTCAAACTT
i macFas5.chr4             C 0 I 182
s macNem1.NW_012012100v1     786742 497 +   1495729 CTCTCTCCCCATCATCCTCCTCACTTCTTTCAGGCAGGGT-GGGGATAGAAC-CAGGAGGAGATTCTGGGAGACAGGGCACTCCTGCAAGGACAGCAGGACAGCTCCGCTGGTGGCCGTAGGATGCTCAGTGGCCCTGCCTGCTGCTCTTCTGGGGGATGCACCGCCTCGCTTTCCTTTCCGGTGCTAGAGCCAGGCGA--CTGTCCGAAGAGTAGTTTCTTTTT-CCCCGCAGAGGCAAACAGGAAATGTTTCCTTTCCTAACTAGCTCTGTCTAGTGCCTGGAATCAGTATTACTGAGTCAGTCCCGCGGTAAGTCAGCAGCTCAGG-AATCTCCCTTCTCTGAGCCTCCCCGCAG-TTCAagctgcttagggaacttgatattttcatgacatctgcgtac--acatgggcagcccagctgtagagctagtggcggcaaccaC-AGCGAAC----AGAGGACTCGGCTTCATGAAAACAGAGGCAAAGAAGTATAGCTATTCAAACTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      20787 495 -    811324 CTCTCTCCCCATCATCCTCCTCACTTCTTTCAGGCAGGGT-GGGGATAGCAC-CAGGAGGAGATTCTGGGAGACAGGGCACTCCTGCAAGGACAGCAGGACAGCTCCGCTGGTGGCCGTGGGATGCTCAGTGGCCCTGCCTGCTGCTCTTCTGGGGGATGCACGGCCTTGCTTTCCTTTCCGGTGTTAGAGCCAGGCGA--CTGTCCGAAGAGTAGTTTCTTTTTCCCCCGCAGAGGCAAACAGGAAGTGTTTCCTTTCCTAACTAGCTCTGTCTAGTGCCTGGAATC----TTACTGAGTCAGTCCCGCAGTAAGTCAGCAGCTCAGGAAATCTCCCTTCTCTGAGGCCTCCCGCAGTTTCAagctgcttagggaacttgatattttcatgacatctgcgtac--acat-ggcagcccagctgtagagctagtggcggcaaccaAGAGCGAAC----AGAGGACTCGGCTTCATG-AAACAGAGGCAAAGAAGTATAGCTATCCAAACTT
i cerAty1.NW_012002513v1   M 1475 C 0
s chlSab2.chr17            30060359 491 -  71996105 CTCTCTCCCCATCATCCTCCTCACTTCTTTCAGGCAGGGT-GGGGATAGCAC-CAGGAGGAGATTCTGGGAGACAGGGCACTCCTGCAAGGACAGCAGGACAGCTCCGCTGGTGGCCGTGGGATGCTCAGTGGCCCTGCCTGCTGCTCTTCTGGGGGATGCACCGCCTCGCTTTCCTTTCCGGTGTTAGAGCCAGGCGA--CTGTCCGAAGAG----TTTCTTTTTCCCCGCAGAGGCAAACAGGAAATGTTTCCTTTCCTAACTAGCTCTGTCTAGTGCCTGGAATC----TTACTGAGTCAGTCCCGCAGTAAGTCAGCAGCTCAGGAAATCTCCCTTCTCTGAGCCTCCCCGCAG-TTCAAGCTGCTTAGGGAACTTGATATTTTCATGACATCTGCGTAC--ACATGGGCAGCCCAGCTGCAGAGCTAGTGGCGGCAACCAA-AGCGAAC----AGAGGACTCGGCTTCATGAAAACAGAGGCAAAGAAGTATAGCTATCCAAACTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      54262 495 +    779361 CTCTCTCCCCATCATCCTCCTCACTTCTTTCAGGCAGGGT-GGGGATAGCAC-CAGGAGGAGATTCTGGGAGACAGGGCACTCCTGCAAGGACAGCAGGACAGCTCCGCTGGTGGCCGTGGGATGCTCAGTGGCCCTGCCTGCTGCTCTTCTGGGGGATGCACGGCCTTGCTTTCCTTTCCGGTGTTAGAGCCAGGCGA--CTGTCCGAAGAGTAGTTTCTTTTTCCCCCGCAGAGGCAAACAGGAAGTGTTTCCTTTCCTAACTAGCTCTGTCTAGTGCCTGGAATC----TTACTGAGTCAGTCCCGCAGTAAGTCAGCAGCTCAGGAAATCTCCCTTCTCTGAGCCTCCCCGCAG-TTCAagctgcttagggaacttgatattttcatgacatctgcgtac--acatgggcagcccagctgtagagctagtggcggcaaccaA-AGCGAAC----AGAGGACTCGGCTTCATGAAAACAGAGGCAAAGAAGTATAGCTATTCAAACTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     711814 494 -   1829203 CTCTCTCCCCATCATCCTCCTCACTTCTTTCAGGCATGGT-GGGGATAGCAC-CAGGAGGAGATTCTGGGAGACAGGGCACTCCTGCAAGGACAGCAGGACAGCCCCGCTGGTGGCTGTGGGATGCTCAGTGGCCCTGCCTGCTGCTCTTCTGGGGGATGCACCGCCTCGCTTTCCTTTCCAGTGTTAGAGCCAGGTGA--CTGTCCGAAGAGTAGTTTCTTTTT-CCCCGCAGAGGCAAAGAGGAAATGTTTCCTTTCCTAACTAGCTCTGTCTAGTGCCTGGAATC----TTACTGAGTCAGTCCCGCAGTAAGTCAGCAGCTCAGGAAATCTCCCTTCTCTGAGCCTCCCCGCAG-TTCAagctgcttagggaacttggtattttcatggcatctgcgtac--acatgggcagcccagccgcagagctagtggcggcaaccaA-AGCGAAC----AGAGGACTCGGCTTCATGAAAACAGAGGCAAAGAGGTATAGCTATCCAACCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30877587 476 + 171630274 CTCTCTCCCCATCCTCCTCCTCACTTCTTTCAGGCAGGGT-GGGGATAGCAAGCAGGAGGAGAAGCTGGGAGACTGGGCACTTCTGCAAAGACCAAAGGACG----------------TGGGCTGCTCACTGGCCCTCCCTGCTGCTCTTCTGGAGGATGCACCACCTTGCTTTCTTTCTT---GTTCCTTTCAAGTGACTCTGTCCGAAGAGTAGT------TT-CTTCTCAGAGGCAGACAGGAAATGTTTCCTTTCTCGAATAGCTCCGTCTAGTGCCTGGAATC----CTACTGAGTCAGTCCCGCAGTTAGTCAGCATCTCAGGAAA-CACCACTTTCTGAGCCTCTC-GCAG-TTCCAGCTGCTTAGGGAACTTGATATTTTCATGACGTCTGCCTACATATATGGGCAGCCCAACCGCAGAGCTAGTGGTGGCAACCAA-AGCGAACAGAGAGAGGACTCGGCTTCAGCAAAACAAAGGCAAAGAAATATAGCTATGCAACTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            41848 493 -    750284 CTCTCTCCCCATCATCCCCCTCACTTCTTTCAGGCAGGGT-GGGGATAGCAAGCAGGAGGAGATGCCGGGAGACAGGGTGCTTCTGCAAAGACCGAAGGACAGCCTCACTGGTGGCCCTGGGCTGCTCGCTGGCCCTGCCTGCTGCTCTTCTGGAGGATGCACCGCCTTGCTTTACTTTCTGGAGTTAGAGTCAAGTGACTCTGTGCAAAGAGTGGTTTCTTCTT-CTTCTCAGAGGCAAACAGGAAATGTTTCCTTTCCTGAATAGCTCCGCCTAGTTCCTGCAATC----TTACTGAGTCAGTCCCGCAGGAAGTCTTCAGCTCAGGAA---ACCTCTTTCTGAGCCTCCC-GCAG-TTCCAGCTGCTTAGGGAACTTGATCTTTTCATGACATCTGCCTAC--ATATGGGCAGCCCAACCGCAGAGCTGGCGGTGGCAACCAA-AGCGAGC----AGAGGACTCGGCTTCAGGAAAACAAAGGCAAAGAAGTATAGCTATGTAACTTT
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018496901v1     481822 493 -    486031 CTCACTCCCCATCATCGTCCTCACTTCTTTCAGGCAGGGCAGGGGATAGCAAGCAGGAGGAGATGCTGGGAGACAGGGCACTTCTGCAAAGACCGAAGGACAGCCCCACTGGTGGCTGTGGGCTGCTCGCTGGCCCTGCCTGCTGCTCTTCTGGAGGATGCACCGCCTTGCTTTCCTTTCTGGAGTTAGAGTCAAGTGGCTCTGTCCAAAGAGTGGT---TTCTT-CTTCTGAGAGGCAAATAGGTAACGTTTCCTTTCCTGAATAGCTCTGTCTAGTGCCTGGAATC----TTACTGAGTCAGTCCCACAGTAAGTTAGCAGCGCAGGAAA-CACCCCTTTCTGAGCCTCCC-TCAG-TTCcagctgcttagggaacttgatattttcatgacatctgcctac--atatgggcagcccaaccgcagagctagtggtggcaaccaA-GGCGAAC----AGAGGACTTGGCTTCAGGAAAACAAAGGCAAAGAAGTATAGCTATGCAACTTT
i aotNan1.NW_018496901v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           663276 163 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I

a score=1147775.000000
s hg38.chr6_GL000254v2_alt  1845146 133 +   4827813 CTGAGTCTT-GTCTCTATATGGAGATGCCCATATGGACAAAT----AGGGT-CTGGACAAGGGGAAGGGTTAACATGAGAAAGTCACATGATTTCTGCTATGCTATTCCTCTGTGCGCTTACCCTTTCTGTTTCTAAAT
s panTro5.chr6             30692198 133 + 175400573 CTGAGTCTT-GTCTCTATATGGAGATGCCCATATGGACAAAT----AGGGT-CTGGACAAGGGGAAGGGTTAACATAAGAAAGTCACATGATTTCTGCTATGCTATTCCTCTGTGCGCTTATCCTTTCTGTTTCTAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31115640 133 + 173848474 CTGAGTCTT-GTCTCTATATGGAGATGCCCATATGGACAAAT----AGGGT-CTGGACAAGGGGAAGGGTTAACATAAGAAAGTCACATGATTTCTGCTATGCTATTCCTCTGTGCGCTTATCCTTTCTGTTTCTAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     621399 133 +   2037526 CTGAGTCTT-GTCTCTATATGGAGATGCCCATATGGACAAAT----AGGGT-CTGGACAAGGGGAAGGGTTAACATAAGAAAGTCACATGATTTCTGCTATGCTATTCCTCTGTGCGCTTATCCTTTCTGTTTCTAAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75296618 133 + 122973662 CTGAGTCTT-GTCTCTATATAGAGATGCCCATATGGACAAAT----ACGGT-CTGGACAAGGGGAAGGGTTAACATAAGAAAGTCACGTGATTTCTGCTATGCTATTCCTCTGTGCGCTTATCCTTTCTGTTTCTAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31214048 133 + 172585720 cTGAGTCTT-GTCTTTATATGGAGATGCCCATATGGACAAAT----AGGGT-CTAGACAAGGGGAAGGGTTAACATAAGAAAGTCACATGATTTCTGCTATGCTATTCCTCTGTGCGCTTATCCTTTCTGTTTCTAAAT
i rheMac8.chr4             I 310 C 0
s macFas5.chr4             30503379 133 - 170955103 CTGAGTCTT-GTCTTTATATGGAGATGCCCATATGGACAAAT----AGGGT-CTAGACAAGGGGAAGGGTTAACATAAGAAAGTCACATGATTTCTGCTATGCTATTCCTCTGTGCGCTTATCCTTTCTGTTTCTAAAT
i macFas5.chr4             I 182 C 0
s macNem1.NW_012012100v1     787239 133 +   1495729 CTGAGTCTT-GTCTTTATATGGAGATGCCCATATGGACAAAT----AGGGT-CTAGACAAGGGGAAGGGTTAACATAAGAAAGTCACATGATTTCTGCTATGCTATTCCTCTGTGCGCTTATCCTTTCTGTTTCTAAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      21282 130 -    811324 CTGAGTCTT--TCTTTATATGGAGATGCCCATATGGACAAAT----AGGGTCCTAGACAAGGGGAAGGGTTAACATAAGAAAGTCACATGA-TTCTGCTATGCTATT-CTCTGTGCGCTTATCCTTTCTGTTTCTAAA-
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30060850 134 -  71996105 CTGAGTCTTGGTCTTTATAGGGAGATGCCCATATGGACAAAT----AGGGT-CTAGACAAGGGGAAGGGTTAACATAAGAAAGTCACATGATTTCTGCTATGCTATTCCTCTGTGCGCTTATCCTTTCTGTTTCTAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      54757 133 +    779361 CTGAGTCTT-GTCTTTATATGGAGATGCCCATATGGACAAAT----AGGGT-CTAGACAAGGGGAAGGGTTAACATAAGAAAGTCACATGATTTCTGCTATGCTATTCCTCTGTGCGCTTATCCTTTCTGTTTCTAAAT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     712308 133 -   1829203 CTGAGTCTT-GTCTTTATATGGAGATGCCCACATGGACAAAT----AGGGT-CTAGACAAGGGGAAGGGTTAACATAAGAAAGTCACGTGATTTCTGCTATGCTATTCCTCTGTGCGCTTATCCTTTCTGTTTCTAAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30878063 137 + 171630274 CTGAGTCTT-GCTCCTATATTAAAATGCCCATATGGACAAATCAGCAGGGT-CTGGACAAGCGGAAAGGTTAACAAAAGAAAGTCACATAATTTCTGCTATGCTATTCCTCTGTGCACTTGTCCTTTCCGTTTATAAAT
i calJac3.chr4             C 0 I 303
s saiBol1.JH378327            42341 137 -    750284 CTGAGTCTT-GCTCCTATATGAAGATGCCCGTATAGACAAATCAGCAGGGT-CTGGACAAGGGGAAAGGTTAACAAGAGAAAGTCACATGATTTCTGCTCTGCTATTCCTCTGTGCGCTTGTCCTTTCCGTTTATAAGT
i saiBol1.JH378327         C 0 I 309
s aotNan1.NW_018496901v1     482315 137 -    486031 CTGAGTCTT-GCTCCTATGTGAAGATGCCCATATGGAAAAATCAGCAGGGT-CTGGACAGGGGGAAAGGTTAACAAGAGAAAGTCTCATCATTTCTGCTATGCTATTCCTCTGTGTGCTTGTCCTTTCAGTTTATAAAT
i aotNan1.NW_018496901v1   C 0 N 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           663276 163 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I

a score=496855.000000
s hg38.chr6_GL000254v2_alt  1845279 69 +   4827813 ATTTCAGCTAAAAGACAATAAATACTGCAACCCTTACATTCCTTCAGCCCTGCTTTCACTTGTCCTGGG
s panTro5.chr6             30692331 69 + 175400573 ATTTCAGCTAAAAGACAATAAATACTGCAACCCTTACACTCCTTCAGCCCTGCTTTCACTTGTCCTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31115773 69 + 173848474 ATTTCAGCTAAAAGACAATAAATACTGCAACCCTTACACTCCTTCAGCCCTGCTTTCACTTGTCCTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     621532 69 +   2037526 ATTTCAGCTAAAAGACAATAAATACTGCAACCCTTACACTCCTTCAGCCCTGCTTTCACTTGTCCTGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75296751 69 + 122973662 ATTTCAGCTAAAAGACAATAAATACCGCAACCCTTACACTCCTTCAGCCCTGCTTTCACTTGTCCTGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31214181 69 + 172585720 ACTTTAGCTAAAAGACAGTAAGTACTGCAACCCTTACACTCCTTCAGCTCTGTTTTCACTTGTCCTGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30503512 69 - 170955103 ACTTTAGCTAAAAGACAGTAAGTACTGCAACCCTTACACTCCTTCAGCTCTGTTTTCACTTGTCCTGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     787372 69 +   1495729 ACTTTAGCTAAAAGACAGTAAGTACTGCAACCCTTACACTCCTTCAGCTCTGTTTTCACTTGTCCTGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      21412 65 -    811324 ACTTTAGCTAAAAGACAGTAAGTACTGCAA-CCTTACACT-CTTCAGCTC--TTTTCACTTGTCCTGGG
i cerAty1.NW_012002513v1   C 0 I 7
s chlSab2.chr17            30060984 69 -  71996105 ACTTTAGCTAAAAGACAGTAAGTACTGCAACCCTTACACTCCTTCAGCTCTGTTTTCACTTGTCCTGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      54890 69 +    779361 ATTTTAGCTAAAAGACAATAAGTACTGCAACCCTTACACTCCTTCAGCTCTGTTTTCACTTGTCCTGGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     712441 69 -   1829203 ATTTTAGCTAAAAGACAATAAGTACTGCAACCCTTACACTCCTTCAGCTCTGTTTTCACTTGTCCTGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30878503 69 + 171630274 GTTTCAGCTAAAAGATAATAAATACCCCAACCCTGAGAATCCTTCAGCTCTGCTTTCATTTGTCTTGGG
i calJac3.chr4             I 303 C 0
s saiBol1.JH378327            42787 69 -    750284 GTTTCAGCCATAAGATAATAAATACTGCAACCCTGAGAATCCTTCAGCTATGCTTTCATTTGTCCTGGG
i saiBol1.JH378327         I 309 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           663276 163 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I

a score=61300.000000
s hg38.chr6_GL000254v2_alt  1845348 9 +   4827813 TGTCCTGAC
s panTro5.chr6             30692400 9 + 175400573 TGTCCTGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31115842 9 + 173848474 TGTCCTGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     621601 9 +   2037526 TGTCCTGAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75296820 9 + 122973662 TGTCCTGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31214250 9 + 172585720 TGTCCTGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30503581 9 - 170955103 TGTCCTGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     787441 9 +   1495729 TGTCCTGGC
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30061053 9 -  71996105 TGTCCTGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      54959 9 +    779361 TGTCCTGGC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     712510 9 -   1829203 TGTCCTGGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30878572 9 + 171630274 TGCCCTGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            42856 9 -    750284 TGTCCTGGC
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           663276 163 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e cerAty1.NW_012002513v1      21477 7 -    811324 I

a score=863447.000000
s hg38.chr6_GL000254v2_alt  1845357 112 +   4827813 TGTCATCTTCATTCATTTATATCAAACACCATTCAATCAATACTTACTACAAGCAAACTATATGTGAGATCAAGAGTACTATTCAAAATAGTTGACAGCTGG--TATGGCAATG
s panTro5.chr6             30692409 112 + 175400573 TGTCATCTTCATTCATTTATATCAAACACCATTCAATCAATACTTACTACAAGCAAACTATATGTGAGATCAAGAGTACTATTCAAAATAGTTGACAGCTGG--TATGGTAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31115851 112 + 173848474 TGTCATCTTCATTCATTTATATCAAACACCATTCAATCAATACTTACTACAAGCAAACTATATGTGAGATCAAGAGTACTATTCAAAATAGTTGACAGCTGG--TATGGTAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     621610 112 +   2037526 TGTCATCTTCATTCATTTATATCAAACACCATTCAATCAATACTTACCACAAGCAAACTATATGTGAGATCAAGAGTACTATTCAAAATAGTTGACAGCTGG--TATGGTAATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75296829 112 + 122973662 TGTCATCTTCATTCATTTATGTCAAACGTCATTCAATCAATACTTACTACAAGCAAACTATATGTGAGATCAAGAGTACTGTTCAAAATAGTTGACAAGTGA--TACGGTAATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31214259 112 + 172585720 TGTCATCTTCATTCATTTATGTCAAACATCATTCAATTAATACTTGCTACAAGCAAACTATATGTGAGATcaagagtgctattcaaaatagttgacaactgg--tatggtaATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30503590 112 - 170955103 TGTCATCTTCATTCATTTATGTCAAACATCATTCAATTAATACTTGCTACAAGCAAACTATATGTGAGATcaagagtgctattcaaaatagttgacaactgg--tatggtaATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     787450 112 +   1495729 TGTCATCTTCATTCATTTATGTCAAACATCATTCAATTAATACTTGCTACAAGCAAACTATATGTGAGATcaagagtgctattcaaaatagttgacaactgg--tatggtaATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      21484 113 -    811324 TGTCATCTTCATTCATTTATGTCAAACATCATTCAATTAATACTTGCTACAAGCAAACTATATGTGAGATCAAGAGTGCTATTC-AAATAGTTGACAACTGGGTGATGGTAATG
i cerAty1.NW_012002513v1   I 7 C 0
s chlSab2.chr17            30061062 112 -  71996105 TGTCATCTTCATTCATTTATGTCAAACATCATTCAATCAATACTTACTACAAGCAAACTATATGTGAGATcaagagtgctattcaaaatagttgacaactgg--tatggtaATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      54968 112 +    779361 TGTCATCTTCATTCATTTATGTCAAACATCATTCAATCAATACTTGCTACAAGCAAACTATATGTGAGATCGAGAGTGCTATTCAAAATAGTTGACAACTGG--TATGGTAATG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     712519 112 -   1829203 TGTCATCTTCATTTATTTATGTCAAACATCATTCAATCAATACTTACTACAAGCAAACTATATGTGAGATcaagagtgctattcaaaatagttgacaactgg--tatggtaATG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30878581 112 + 171630274 TGTCATCTTCATTCATTTATGTCAAACATGATTCAATCAATACTTACCACAAACAAACTATATGTGAGATCAAGAGTAGTATTCAAAATAGTTGGCAACTGG--TATGATAATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            42865 112 -    750284 TGTCATCTTTATTCATTTATGTCAAACATCATTCAATCAATACTTACAACAAACAAACTGTAAGTGAGATCAAGAGTAGTATTCAAAATAGTTGGCAACTAG--TATGATAATG
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           663276 163 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I

a score=277320.000000
s hg38.chr6_GL000254v2_alt  1845469 39 +   4827813 GAAATTAATATATAA---ATAAAAT-TTTCCCAATTATGCTAT
s panTro5.chr6             30692521 39 + 175400573 GAAATTAATATATAA---ATAAAAT-TTTCCCAACTATGCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31115963 39 + 173848474 GAAATTAATATATAA---ATAAAAT-TTTCCCAACTATGCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     621722 39 +   2037526 GAAATTAATATATAA---ATAAAAT-TTTCCCAATTATGCCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75296941 39 + 122973662 GAAATTAATGTATAA---ATAAAAT-TTTCCCAATTATGCTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31214371 39 + 172585720 GAAATTAATATATAA---ATAAAAA-TTTCCCAATTATGCTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30503702 39 - 170955103 GAAATTAATATATAA---ATAAAAA-TTTCCCAATTATGCTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     787562 39 +   1495729 GAAATTAATATATAA---ATAAAAA-TTTCCCAATTATGCTAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      21597 40 -    811324 TAAATTAATATATAA---ATAAAAATTTTCCCAATTATGCTAt
i cerAty1.NW_012002513v1   C 0 I 321
s chlSab2.chr17            30061174 39 -  71996105 CAAATTAATATATAA---ATAAAAA-TTTCCCAATTGTGCTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      55080 39 +    779361 CAAATTAATATATGA---ATAAAAA-TTTCCCAATTATGCTAT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     712631 39 -   1829203 CAAATTAATATATAA---ATAAAAA-TTTCCCAATTATGCTAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30878693 39 + 171630274 TAAATTAACATATAA---AGAAAAT-TTTCCCAACTATACTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            42977 39 -    750284 TAAATTAACATATAA---ATAAAAA-TTTCCCAAGTATACTAT
i saiBol1.JH378327         C 0 C 0
s otoGar3.GL873550           663439 36 +  18854210 Gaaattaatatttaagctaaaaaaa-tt----aattatatt--
i otoGar3.GL873550         I 163 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I

a score=872907.000000
s hg38.chr6_GL000254v2_alt  1845508 112 +   4827813 TTTTCTGTCCTAACTAAATGATTATAAAACTACTTACCAAGTGACAC-AGTTGAAATATAAATAATTTCT-TAAAT-AGTTATAACAATTTCCAAATTATTTATTGATTTTTAAA
s panTro5.chr6             30692560 112 + 175400573 TTTTCTTTCCTAACTAAATGATTATAAAACTACTTACCAAGTGACAC-AGTTGAAATACAAATAATTTCT-TAAAT-AGTTATAACAATTTCCAAATTATTTATTGATTTTTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31116002 112 + 173848474 TTTTCTTTCCTAACTAAATGATTATAAAACTACTTACCAAGTGACAC-AGTTGAAACACAAATAATTTCT-TAAAT-AGTTATAACAATTTCCAAATTATTTATTGATTTTTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     621761 112 +   2037526 TTTTCTTTCCTAACTAAATGATTATAAAACTACTTACCAAGTGACAC-AGTTGAAATACAAATAATTTCT-TAAAT-AGTTTTAACAATTTCCAAATTATTTATTGATTTTTAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75296980 112 + 122973662 TTTTCTTTTCTAACTAAACGATTATAAAACTACTTACCAAGTGACAC-AGTTGTAATATAAATAATTTCT-TAAAT-AGTTACAACAATTTCCAAATTATTTATTGATTTTTAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31214410 112 + 172585720 TTTTCTTTTCTAACTAAATAATTATAAAACTATTTACCAAGTGACAC-AGTTGTAGTATAAATAATTTCT-TAAAT-TGTTATAACAATTTCCAAATTATTTATGAGTTTTTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30503741 111 - 170955103 TTTTCTTTTCTAACTAAATAATTATAAAACTATTTACCAA-TTACAC-AGTTGTAGTATAAATAATTTCT-TAAAT-TGTTATAACAATTTCCAAATTATTTATGAGTTTTTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     787601 112 +   1495729 TTTTCTTTTCTAACTAAATAATTATAAAACTATTTACCAAGTGACAC-AGTTGTAGTATAAATAATTTCT-TAAAT-TGTTATAACAATTTCCAAATTATTTATGAGTTTTTAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      21958 112 -    811324 TTTTCTTTTCTAACTAAATGATTATAAAACTATTTACCAAGTGACAC-AGTTGTAGTATAAATAATTTCT-TAAAT-TGTTATAACAATTTCCAAATTATTTATGAGTTTTTAAA
i cerAty1.NW_012002513v1   I 321 C 0
s chlSab2.chr17            30061213 112 -  71996105 TTTTCTTTTCTAACTAAATGATTATAAAACTATTTACCAAGTGACAC-AGTTGTAGTATAAATAATTTCT-TAAAT-TGTTATAACAATTTCCAAATTATTTATGAATTTTTAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      55119 112 +    779361 TTTTCTTTTCTAACTAAATGATTATAAAACTATTTACCAAGTGACAC-AGTTGTAGTATAAATAATTTCT-TAAAT-TGTTATAACAATTTCCAAATTATTTATGAGTTTTTAAA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     712670 112 -   1829203 TTTTCTTTTCTAACTAAATGATTATAAAACTATTTACCAAGTGACAC-AGTTGTAGTATAAATAATTTCT-TAAAT-TGTTATAACAATTTCCAAATTATTTATGGATTTTTAAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30878732 111 + 171630274 TTTTCTTTTCTAACTAAACGCTTATAAAACTACTTGCCACGTGACAC-AGTTGTAGTACAAATAATTTCT-TAAATCCGTTATAACAAGTTCCAAATTATTTATTGA--GTTAAA
i calJac3.chr4             C 0 I 1031
s saiBol1.JH378327            43016 111 -    750284 TTTTCTTTTCTAACTAAACACTTATAAAACTACTTGCCACATGACAC-AGTTGTAGTATAAATAATTTCT-TAAATCAATTATAACAAGTTCCAAATTATTTATTGA--TTTAAA
i saiBol1.JH378327         C 0 C 0
s otoGar3.GL873550           663475 114 +  18854210 ttaaatttCCTAATGAAACAATTATAAAACTACATGCAAAGTGACATAAGTTGTAGCACAAATAAGTTCTCTTAAT-CACTATGATAATTTCCAAATTAATTATAGATGTCTAGA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I

a score=903518.000000
s hg38.chr6_GL000254v2_alt  1845620 106 +   4827813 CATTTTTTGCATTTCTTAGGTGGTAATTATTGGTTAAGTGATATATGCCTATGTTAGCCATGATTTGACAAAAGAGCCTTGTATAAGCTTCTGATAATTTCCCCAT
s panTro5.chr6             30692672 106 + 175400573 CATTTTTTGCATTTCTTAGGTGGTAATTATTGGTTAAGTGATATATGCCTATGTTAGCCATGATTTGACAAAAGAGCCTTGTATAAGCTTCTGATAATTTCCCCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31116114 106 + 173848474 CATTTTTTGCATTTCTTAGGTGGTAATTATTGGTTAAGTGATATATGCCTATGTTAGCCATGATTTGACAAAAGAGCCTTGTATAAGCTTCTGATAATTTCCCCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     621873 106 +   2037526 CACTTTTTGCATTTCTTAGGTGGTAATTATTGGTTAAGTGATATATGCCTATGTTAGCCATGATTTGACAAAAGAGCCTTGTATAAGCTTTTGATAATTTCCCCAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75297092 106 + 122973662 CATTTTTTGCATTTCTTAGGTAGTAATTATTGGTTAAGTAATATATGCCTATGTTAGCCATGATTTGACAAAAGAGCCTTGTATAAGCTTCTGATAATTTCCCAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31214522 106 + 172585720 CTTTTTTTGCATTTCTTAGGTAGTAATTATTGGTTAAGTGATATATGCCTATGTTAGCCATGATTTGACAAAAGAGTCTTGTATAAGCTTCTGATAATTTCCCCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30503852 106 - 170955103 CTTTTTTTGCATTTCTTAGGTAGTAATTATTGGTTAAGTGATATATGCCTATGTTAGCCATGATTTGACAAAAGAGTCTTGTATAAGCTTCTGATAATTTCCCCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     787713 106 +   1495729 CTTTTTTTGCATTTCTTAGGTAGTAATTATTGGTTAAGTGATATATGCCTATGTTAGCCATGATTTGACAAAAGAGTCTTGTATAAGCTTCTGATAATTTCCCCAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      22070 106 -    811324 CATTTTTTGCATTTCTTAGGTAGTAATTATTGGTTAAGTGATATATGCCTATGTTAGCCATGATTTGACAAAAGAGTCTTGTATAAGCTTCTGATAATTTCCCCAT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30061325 106 -  71996105 CATTTTTTGCATTTCTTGGGTAGTAATTATTGGTTAAGTGATATATGCCTATGTTAGCCATGATTTGACAAAACAGTCTTGTATAAGCTTCTGATAATTTCCCCAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      55231 106 +    779361 TATTTTTTGCATTTCTTAGGTAGTAATTATTGGTTAAGTGATATATGCCTATGTTAGCCATGATTTGACAAAAGAGTCTTGTATAAGCTTCTGATAATTTCCCCAT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     712782 106 -   1829203 CATTTTTTGCATTTCTTAGGTAGTAATTATTGGTTAAGTGATATATGCCTATGTTAGCCATGATTTGACAAAACAGTCTTGTATAAGCTTCTGATAATTTCCCCAT
i colAng1.NW_012115577v1   C 0 I 365
s calJac3.chr4             30879874 103 + 171630274 CATTTTTTGCATTTCTTAGGTAGTAATTGT---TTAAGTGATATATGCCTATGTTAGCCATGATTTGACAAAAGCACCTTGTATAAGCTTCGGATAATTTCCCCAT
i calJac3.chr4             I 1031 C 0
s saiBol1.JH378327            43127 104 -    750284 --CTTTTTGCATTTCTTAGGTAGTAATTATTGGTTAATTGATATATGCCTATGTTAGCCATGATTTGACAAAAGAGCCTTGTATAAGCTTCCAATAATTTCCCCGT
i saiBol1.JH378327         C 0 C 0
s otoGar3.GL873550           663589  99 +  18854210 AATTTATAGCATTTTTGAG---GTAATTATTAGCTAAGTG--ATGTGCCTATGTGAGCCATGATTTGATAAAA--GCCGCATAAAACCTTCTGACAATTTTCTCAT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I

a score=742172.000000
s hg38.chr6_GL000254v2_alt  1845726 96 +   4827813 TAAATTGTTTGTATATTATGACGTATGTA--ATCAACTATATTGTTCATGGTGCCAAATCCTCTCTCACTTTAGCAGCTATGTTAAAGATTTTTT-AGC
s panTro5.chr6             30692778 96 + 175400573 TAAATTGTTAGTATATTATGACGTATGTA--ATCAACTATATTGTTCATGGTGCCAAATCCTCTCTCACTTTAGCAGCTATGTTAAAGATTTTTT-AGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31116220 96 + 173848474 TAAATTGTTAGTATATTATGACGTACGTA--ATCAACTATATTGTTCATGGTGCCAAATCCTCTCTCACTTTAGCAGCTATGTTAAAGATTTTTT-AGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     621979 96 +   2037526 TAAATTGTTAGTATATTATGACATATGTA--ATCAACTATATTGTTCATGGTGCCAAATCCTCTCTCACTTTAGCAGCTATGTTAAAGATTTTTT-AGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75297198 98 + 122973662 TAAATTGTTTGTATGTTATGACGTATGTAACATCAACTATATTGTTCATGGTGCCAAATCCTCTCTCACTTTAGCAACTATGTTAAAGATTTTTT-AGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31214628 97 + 172585720 TAAATTGTTTGTATATTATGAGGTATGTAACATCAACTATATTGTTCATGGTGCCAAATC--CTCTCACTTTAGCAGCTATGTTAAAGATTTTTTAAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30503958 97 - 170955103 TAAATTGTTTGTATATTATGAGGTATGTAACATCAACTATATTGTTCATGGTGCCAAATC--CTCTCACTTTAGCAGCTATGTTAAAGATTTTTTAAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     787819 97 +   1495729 TAAATTGTTTGTATATTATGAGGTATGTAACATCAACTATATTGTTCATGGTGCCAAATC--CTCTCACTTTAGCAGCTATGTTAAAGATTTTTTAAGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      22176 96 -    811324 TAAATTGTTTGTATATTATGACGTATGTAACATCAACTATATTGTTCATGGTGCCAAATC--CTCTCACTTTAGCAGCTATGTTAAAGATTTTTT-AGC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30061431 96 -  71996105 TAAATTGTTTGTATATTATGACGTATGTAACATCAACTATAATGTTCATGGTGCCAAATC--CTCTCACTTTAGCAGCTATGTTAAAGATTTTTT-AGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      55337 96 +    779361 TAAATTGTTTGTATATTATGACGTATGTAACATCAACTATATTGTTCATGGTGCCAAATC--CTCTCACTTTAGCAGCTATGTTAAAGATTTTTT-AGC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     713253 96 -   1829203 TAAATTGTTTGTATATTATGACGTATGTAACATCAACTATATTGTTCATGGTGCCAAATC--CTCTCACTTTAGCAGCTATGTTAAAGATTTTTT-AGC
i colAng1.NW_012115577v1   I 365 C 0
s calJac3.chr4             30879977 99 + 171630274 CAAATTGTTTGTATATTTTGACGTGTGTAACGTCAACTACATTGTTTATAGTGCCAAATTCTCTCTCACTTTAACAGCTACATTAAAGATTTTTTTAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            43231 99 -    750284 CAAATTGTTTGTATATTATGACGTATGTAATGTCAACTACATTGTTTATAGGGCCAAATTCTCTCTCACTTTAGCAGTTACATTAAAGATTTTTTTAGC
i saiBol1.JH378327         C 0 C 0
s otoGar3.GL873550           663688 87 +  18854210 ----TAGCTGGC---TTATGACATATGTAACATCAACGGTATTATTCATGGTACTAAATG--CTCT--CTCCAGCAGCTCCACTAAAGTTTCTTT-AGC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I

a score=138433.000000
s hg38.chr6_GL000254v2_alt  1845822 43 +   4827813 CCTTGAACTGCTGTCTGAAATTCtttttctttctttttttttt
s panTro5.chr6             30692874 42 + 175400573 CCTTAAACTGCTGTCTGAAATTCtttttctttc-ttttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31116316 42 + 173848474 CCTTAAACTGCTGTCTGAAATTCtttttctttc-ttttttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     622075 42 +   2037526 CCTTAAACTGCTGTCTGAAATTCtttttctttc-ttttttttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75297296 43 + 122973662 CCTTGAACTGCTGTCTGAAATTCtttttctttctttcttttgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31214725 34 + 172585720 CCTTGAACTGCTGTCTGAAAttctttttttttt-t--------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30504055 34 - 170955103 CCTTGAACTGCTGTCTGAAAttctttttttttt-t--------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     787916 42 +   1495729 CCTTGAACTGCTGTCTGAAATTCtttttttttt-ttttttttt
i macNem1.NW_012012100v1   C 0 I 312
s cerAty1.NW_012002513v1      22272 24 -    811324 CCTTGAACTGCTGTCTGAAAttct-------------------
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30061527 33 -  71996105 CCTTGAACTGCTGTCTGAAAttctttttttttt----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      55433 23 +    779361 CCTTGAACTGCTGTCTGAAAttc--------------------
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     713349 24 -   1829203 CCTTGAACTGCTGTCTGAAAttct-------------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30880076 26 + 171630274 CCTTGAC---CTGTCTGAAACTCtttttt--------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            43330 24 -    750284 CCTTGAC---ATGTCTGAAAttc--tttt--------------
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           663775  0 +  18854210 C
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I

a score=553088.000000
s hg38.chr6_GL000254v2_alt  1845865 91 +   4827813 ttctttttttgagac--agtctcactctgtcgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctccacctccccggttcaa
s panTro5.chr6             30692916 93 + 175400573 ttctttttttgagacagagtcttgctctgtcgcccaggctggagtgcagtggcgtgatcttggctcactgcaacctccacctcccgggttcaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31116358 93 + 173848474 tctttttttggagacagagtcttgctctgtcgcccaggctggagtgcagtggcgtgatcttggctcactgcaacctccacctcccgggttcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     622117 91 +   2037526 ttctttttttgagac--agtctcactctgtcgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctccacctcccgggttcaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75297339 91 + 122973662 ttttttttttgagac--agtctcactctgtcgcccaggctggagtgcagtggcgtgatcttggctcactgcaacctccacctcgcaggttcaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31214759 91 + 172585720 ttttttttttgagac--agtctcactgtgtcacccaggctggagtgcagtggcgcagtcttggctcactgcaaactctgtcccccgggttcaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30504089 91 - 170955103 ttttttttttgagac--agtctcactgtgtcacccaggctggagtgcagtggcgcagtcttggctcactgcaaactctgtcccccgggttcaa
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      22296 88 -    811324 ---tttttttgagac--agtctcactgtgtcacccaggctggagtgcagtggcgcagtcttggctcactgcaaactctgtctcccgggttcaa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30061560 91 -  71996105 ttttttttttgagac--agtctcactgtgtcgcccaggctggagtgcagtggcgcagtcttggcttactgcaaactctgtctcccaggttcaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      55456 90 +    779361 -tttttttttgagac--agtctcactgtgtcacccaggctggagtgcagtggcgcagtcttggctcactgcaaactctgtctcccgggttcaa
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     713373 88 -   1829203 ---tttttttgagac--agtctcactgtgtcacccaggctggagtgcagtggcacagtcttggctcactgcaaactctgtctcccgggttcaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30880102 93 + 171630274 ttttctttttgagacagagtctcactctgtttcccaggctggagtgaagtggcatgatcttggctcactgcaacctccacctcctgggttcaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            43354 91 -    750284 ttttctttttgagac--agtcccactctgtttcccaggctggagtgaagtggcgtgatcttggctcactgcaacctccatctcctgggttcaa
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           663775  0 +  18854210 C
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e macNem1.NW_012012100v1     787958 312 +   1495729 I

a score=15334.000000
s hg38.chr6_GL000254v2_alt  1845956 3 +   4827813 gca
s panTro5.chr6             30693009 3 + 175400573 gca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31116451 3 + 173848474 gca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     622208 3 +   2037526 gca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75297430 3 + 122973662 gca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31214850 3 + 172585720 gca
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002513v1      22384 3 -    811324 gca
i cerAty1.NW_012002513v1   C 0 I 3
s chlSab2.chr17            30061651 3 -  71996105 gca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      55546 3 +    779361 gca
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     713461 3 -   1829203 gca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30880195 3 + 171630274 gtg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            43445 3 -    750284 gcg
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           663775 0 +  18854210 C
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e macNem1.NW_012012100v1     787958 312 +   1495729 I
e macFas5.chr4             30504180 0 - 170955103 C

a score=9828.000000
s hg38.chr6_GL000254v2_alt  1845959 3 +   4827813 att
s panTro5.chr6             30693012 3 + 175400573 att
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31116454 3 + 173848474 att
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     622211 3 +   2037526 att
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75297433 3 + 122973662 att
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002513v1      22390 3 -    811324 att
i cerAty1.NW_012002513v1   I 3 C 0
s manLeu1.NW_012106264v1      55549 3 +    779361 att
i manLeu1.NW_012106264v1   C 0 I 1249
s calJac3.chr4             30880198 3 + 171630274 att
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            43448 3 -    750284 att
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           663775 0 +  18854210 C
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e colAng1.NW_012115577v1     713464 0 -   1829203 C
e chlSab2.chr17            30061654 0 -  71996105 C
e macNem1.NW_012012100v1     787958 312 +   1495729 I
e macFas5.chr4             30504180 0 - 170955103 C
e rheMac8.chr4             31214853 0 + 172585720 C

a score=183219.000000
s hg38.chr6_GL000254v2_alt  1845962 77 +   4827813 ctcctgtctcagcctcccgagtagctgggattgcaggcacatgccaccacgcccagctac-tttttgtatttttagta
s panTro5.chr6             30693015 77 + 175400573 ctcctgcctcagcctcccgagtagctgggattgcaggcacatgccaccacgcccagctaa-tttttgtatttttagta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31116457 77 + 173848474 ctcctgcctcagcctcccgagtagctgggattgcaggcacatgccaccacgcccagctaa-tttttgtatttttagta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     622214 77 +   2037526 ctcctgcctcagcctcccgagtagctgggattgcaggcacatgccaccacgcccagctaa-tttttgtatttttagta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75297436 77 + 122973662 ctcctgcctcagcctcccgagtagctgggattgcaggcacatgccaccacgcccagctaa-tttttgtatttttagta
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002513v1      22393 78 -    811324 ctcctgcctcagcctcctgagtagctgggactacacgctcctgccaccacgcctggctaattttttgtatttttagta
i cerAty1.NW_012002513v1   C 0 M 1426
s calJac3.chr4             30880201 77 + 171630274 ctcctgcctcagcctcccaagtagctgggattacaggcacacaccaccatgcccagctaa-tttttgtatttttagta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            43451 77 -    750284 ctcctgcctcagcctcccaagtagctgggattacaggcacacaccaccatgcccggctaa-tttttgtattttcagta
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           663775  0 +  18854210 C
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e colAng1.NW_012115577v1     713464  0 -   1829203 C
e manLeu1.NW_012106264v1      55552 1249 +    779361 I
e chlSab2.chr17            30061654  0 -  71996105 C
e macNem1.NW_012012100v1     787958 312 +   1495729 I
e macFas5.chr4             30504180  0 - 170955103 C
e rheMac8.chr4             31214853  0 + 172585720 C

a score=97105.000000
s hg38.chr6_GL000254v2_alt  1846039 68 +   4827813 aagag-ggggtttcaccacgtaggccaagctggtctcaaactcctgacctcaaatgatccacctgcctc
s panTro5.chr6             30693092 68 + 175400573 aagag-ggggtttcaccacgtaggccaagctggtctcaaactcctgacctcaaatgatccacctgcctc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31116534 68 + 173848474 aagag-ggggtttcaccacgtaggccaagctggtctcaaactcctgacctcaaatgatccacctgcctc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     622291 68 +   2037526 aagag-ggggtttcaccacgtaggccaagctggtctcaaactcctgacctcaaatgatccacctgcctc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75297513 50 + 122973662 aagag-ggggtttcaccacgtaggccaagctgatctcaaactcctgacctc------------------
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30880278 69 + 171630274 gagactggggtttcaccacgttggccaggctagtctcaaaatcctgacctaaaatcatccacccacctc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            43528 68 -    750284 gagac-agggtttcaacatgttggccaggctagtctggaaatcctgacctaaaatgatccacccacctc
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           663775  0 +  18854210 C
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e colAng1.NW_012115577v1     713464  0 -   1829203 C
e manLeu1.NW_012106264v1      55552 1249 +    779361 I
e chlSab2.chr17            30061654  0 -  71996105 C
e cerAty1.NW_012002513v1      22471 1426 -    811324 M
e macNem1.NW_012012100v1     787958 312 +   1495729 I
e macFas5.chr4             30504180  0 - 170955103 C
e rheMac8.chr4             31214853  0 + 172585720 C

a score=32632.000000
s hg38.chr6_GL000254v2_alt  1846107 39 +   4827813 ggcctcccaaagtgctgggattacaggcatgagccacca
s gorGor5.CYUI01015528v1     622359 39 +   2037526 ggcctcccaaagtgctgggattacaggcatgagccgcca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75297563 39 + 122973662 ggcctcccaaagtgctgggattacaggcatgagccacca
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30880347 39 + 171630274 agcctcctaaagtcctgggattacaggcatgagccacca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            43596 39 -    750284 agcctcctgaagtcctgggattacagacgtgagccacca
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           663775  0 +  18854210 C
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e colAng1.NW_012115577v1     713464  0 -   1829203 C
e manLeu1.NW_012106264v1      55552 1249 +    779361 I
e chlSab2.chr17            30061654  0 -  71996105 C
e cerAty1.NW_012002513v1      22471 1426 -    811324 M
e macNem1.NW_012012100v1     787958 312 +   1495729 I
e macFas5.chr4             30504180  0 - 170955103 C
e rheMac8.chr4             31214853  0 + 172585720 C
e panPan2.chr6             31116602  0 + 173848474 C
e panTro5.chr6             30693160  0 + 175400573 C

a score=26499.000000
s hg38.chr6_GL000254v2_alt  1846146 112 +   4827813 cgcctggccTAGAAAttcttttttttttttt----tgagacggagtctcctgtcgcccaggctggagtgcggtggcgcgatctcagctcactgcaagctcctcctcccgggttcac
s gorGor5.CYUI01015528v1     622398 111 +   2037526 cgcctggcTTAGAAAttcttttttttttttt-----gagacggagtctcctgtcgcccaggctggagtgcggtggcgcgatctcagctcattgcaagctcctcctcccgggttcac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75297602 116 + 122973662 cgcatggccTAGAAAttcttttttttttttttttttgagacagagtctcctgtcacccaggctggagggcagtcgtccaatctcagctcactgcaagctcttcctcccaggttcac
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            43635   0 -    750284 C
e otoGar3.GL873550           663775   0 +  18854210 C
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e calJac3.chr4             30880386   0 + 171630274 C
e colAng1.NW_012115577v1     713464   0 -   1829203 C
e manLeu1.NW_012106264v1      55552 1249 +    779361 I
e chlSab2.chr17            30061654   0 -  71996105 C
e cerAty1.NW_012002513v1      22471 1426 -    811324 M
e macNem1.NW_012012100v1     787958 312 +   1495729 I
e macFas5.chr4             30504180   0 - 170955103 C
e rheMac8.chr4             31214853   0 + 172585720 C
e panPan2.chr6             31116602   0 + 173848474 C
e panTro5.chr6             30693160   0 + 175400573 C

a score=1158.000000
s hg38.chr6_GL000254v2_alt  1846258 3 +   4827813 gcc
s gorGor5.CYUI01015528v1     622509 3 +   2037526 gcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75297718 3 + 122973662 gca
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30504180 3 - 170955103 gcc
i macFas5.chr4             C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            43635 0 -    750284 C
e otoGar3.GL873550           663775 0 +  18854210 C
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e calJac3.chr4             30880386 0 + 171630274 C
e colAng1.NW_012115577v1     713464 0 -   1829203 C
e manLeu1.NW_012106264v1      55552 1249 +    779361 I
e chlSab2.chr17            30061654 0 -  71996105 C
e cerAty1.NW_012002513v1      22471 1426 -    811324 M
e macNem1.NW_012012100v1     787958 312 +   1495729 I
e rheMac8.chr4             31214853 0 + 172585720 C
e panPan2.chr6             31116602 0 + 173848474 C
e panTro5.chr6             30693160 0 + 175400573 C

a score=340004.000000
s hg38.chr6_GL000254v2_alt  1846261 186 +   4827813 attctcctgcctcagcctcctgagtagctgggactacaggcgcctgccaccatgcctggctcattttttgtatttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctaaccttgtgatctgcccgcctcggcctcccaaagtgctgggattacaggcatgagccaccg
s gorGor5.CYUI01015528v1     622512 186 +   2037526 attctcctgcctcagcctcctgagtagctgggactacaggcgcccgccaccatgcctggctcattttttgtatttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctaaccttgtgatctgcccgcctcggcctcccaaagtgctgggattacaggcatgagccaccg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75297721 186 + 122973662 attctcctgcctcagcctcccgagtagctgggactacaggcacccgccaccatgcctggctcattttttgtatttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctaaccttgtgatccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31214853 186 + 172585720 attctcctgcctcagcctcctgagtagctgggactacacgctcccgccaccacgcctggctaattttttgtatttttagtagagacggggtttcaccatgttatccaggatgttctcgatctcctgacctcacgatctgccagcctcggcctcccaaagtgctgggattacaggcgtgagccaccg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30504183 186 - 170955103 attctcctgcctcagcctcctgagtagctgggactacacgctcccgccaccacgcctggctaattttttgtatttttagtagagacggggtttcaccatgttatccaggatgttctcgatctcctgacctcatgatcggccagcctcggcctcccaaagtgctgggattacaggcgtgagccaccg
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            30061654 186 -  71996105 attctcctacctcagcctcctgagtagctgggactacaggctcccgccaccacgcctggctaattttttgtatttttagtagagacagggtttcaccatgttatccaggatggtctggatctactgacctcatgatccgccagcctcggcctcccaaagtgctgggattacaggcgtgagccaccg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     713464 186 -   1829203 attctcctgcctcagcctcctgagtagctgggactacaggctcccatcaccatgcctggctaattttttgtatttttagtagagacagggtttcaccatgttatccaggatggcctcgatctcctgacctcatgatccgccagcctcggcctcccaaagtgctgggattacaggcgtgagccacca
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            43635   0 -    750284 C
e otoGar3.GL873550           663775   0 +  18854210 C
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e calJac3.chr4             30880386   0 + 171630274 C
e manLeu1.NW_012106264v1      55552 1249 +    779361 I
e cerAty1.NW_012002513v1      22471 1426 -    811324 M
e macNem1.NW_012012100v1     787958 312 +   1495729 I
e panPan2.chr6             31116602   0 + 173848474 C
e panTro5.chr6             30693160   0 + 175400573 C

a score=2972.000000
s hg38.chr6_GL000254v2_alt  1846447 2 +   4827813 cg
s gorGor5.CYUI01015528v1     622698 2 +   2037526 cg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75297907 2 + 122973662 cg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31215039 2 + 172585720 tg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30504369 2 - 170955103 tg
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            30061840 2 -  71996105 cg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     713650 2 -   1829203 tg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30880386 2 + 171630274 ca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            43635 2 -    750284 ca
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           663775 0 +  18854210 C
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e manLeu1.NW_012106264v1      55552 1249 +    779361 I
e cerAty1.NW_012002513v1      22471 1426 -    811324 M
e macNem1.NW_012012100v1     787958 312 +   1495729 I
e panPan2.chr6             31116602 0 + 173848474 C
e panTro5.chr6             30693160 0 + 175400573 C

a score=17364.000000
s hg38.chr6_GL000254v2_alt  1846449 5 +   4827813 cccgg
s gorGor5.CYUI01015528v1     622700 5 +   2037526 cctgg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75297909 5 + 122973662 cccag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31215041 5 + 172585720 cccgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30504371 5 - 170955103 cccgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     788270 5 +   1495729 cccgg
i macNem1.NW_012012100v1   I 312 C 0
s chlSab2.chr17            30061842 5 -  71996105 cccgg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     713652 5 -   1829203 cccgg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30880388 5 + 171630274 cccag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            43637 5 -    750284 ctcag
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           663775 0 +  18854210 C
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e manLeu1.NW_012106264v1      55552 1249 +    779361 I
e cerAty1.NW_012002513v1      22471 1426 -    811324 M
e panPan2.chr6             31116602 0 + 173848474 C
e panTro5.chr6             30693160 0 + 175400573 C

a score=1304870.000000
s hg38.chr6_GL000254v2_alt  1846454 326 +   4827813 ccTAGAAATTCTTA-TTATTTAATATCTCCGTTCACTCCACCACAAAAAT--CAATTAA-TAAAAGCCATCTTTAATAAGTAGGCTTAATTGTATTGATTAAATT-AAAAATTGTCTTGATTTAATTGGTTACATCTATGAAGCTTTGTAAACATCCTTCATGGTTGACTTAATTTAAAAATTTTAAGTTCTTAATATATTTTACTTTTGTCATCAAACTACAATTGCAATCACATAAATTATTAGATAATCTAATTGA-CTTTTTCTCTTG----AAGTTGACA---TTTTTCTTTCAAA------TGGTATATCATATTTTTAAACAATACTATCTACTTTTT
s gorGor5.CYUI01015528v1     622705 326 +   2037526 ccTAGAAATTCTTA-TTATTTAATATCTCTGTTCACTCCACCACAAAAAT--CAATTAA-TAAAAGCCATCTTTAATAAGTAGGCTTAATTGTATTGATTAAATT-AAAAATTGTCTTGATTTAATTGATTACATCTATGAAGCTTTGTAAACATCCTTCATGGTTGACTTAATTTAAAAATTTTAAGTTCTTAATATATTTTACTTTTGTCATCAAACTACAATTGCAATCACATAAATTATTAGATAATCTAATTAA-CTTTTACTCTTG----AAGTTGACA---TTTTTCTTTCAAA------TGGTATATCATATTTTTAAACAATACTATCTACTTTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75297914 328 + 122973662 cATAGAAATTCTTATTTATTTAATATCTCTGTTCACTCCACCACAAAAAT--CAATTAA-TATAAGCCATCTTTAATAAGTAGGCTTAATTGTATTGATTAAATTAAAAAATTGTGTTGATTTAATTGGTTACCTCTATGAAGCTTTGTAAACATCCTTCATGGTTGACTGAATTTAAAAATTTTAAGTTCTTAATATAGTTTACTTTTGTCATCAAACTACAATTGCAATCACATAAATTATCAGATAATCTAATTGA-CTTTTTCTCTTG----AAGTTGACA---TTTTTCTTTCAAA------TGGTATATCATATTTTTAAACACTACTATCTACTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31215046 327 + 172585720 ccTAGAAATTCTTATTTATTTAATATCTCTGTTCACTCCACCACAAAAAT--CAATTAA-TATAAGCCATCTTTAATAAGTAGGCTTAATTGTATTGATTAATTT-AAAAATTGTGTTGATTTAATGGGTTACATCTATGAAGCTTTGTACACATACTTCATGGTTGACTGAACTTAAAATTTTTAAGTTCTTAATATATTTTACTTTTGTCATCAAACTACAGTTGCAATCACATAAATTATCAGATAATCTAATTGA-CTTTTTCTTTTG----AAGTTGACA---TTTTTCTTTCAAA------TAGTATATCATATTTTTAAACAATACTGTCTACATTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30504376 327 - 170955103 ccTAGAAATTCTTATTTATTTAATATCTCTGTTCACTCCACCACAAAAAT--CAATTAA-TATAAGCCATCTTTAATAAGTAGGCTTAATTGTATTGATTAATTT-AAAAATTGTGTTGATTTAATGGGTTACATCTATGAAGCTTTGTACACATACTTCATGGTTGACTGAATTTAAAATTTTTAAGTTCTTAATATATTTTACTTTTGTCATCAAACTACAGTTGCAATCACATAAATTATCAGATAATCTAATTGA-CTTTTTCTTTTG----AAGTTGACA---TTTTTCTTTCAAA------TAGTATATCATATTTTTAAACAATACTGTCTACATTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     788275 327 +   1495729 ccTAGAAATTCTTATTTATTTAATATCTCTGTTCACTCCACCACAAAAAT--CAATTAA-TATAAGCCATCTTTAATAAGTAGGCTTAATTGTATTGATTAATTT-AAAAATTGTGTTGATTTAATGGGTTACATCTATGAAGCTTTGTACACATACTTCATGGTTGACTGAATTTAAAATTTTTAAGTTCTTAATATATTTTACTTTTGTCATCAAACTACAGTTGCAATCACATAAATTATCAGATAATCTAATTGA-CTTTTTCTTTTG----AAGTTGACA---TTTTTCTTTCAAA------TAGTATATCATATTTTTAAACAATACTGTCTACATTTT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30061847 327 -  71996105 ccTAGAAATTCTTATTTATTTAATATTTCTGTTCACTCCACCACAAAAAT--CAATTAA-TATAAGCCATCTTTAATAAGTAGGCTTAATTGTATTGATTAATTT-AAAAATTGTGTTGATTTAATGGGTTACATCTATGAAGCTTTGTACACATACTTCATGGTTGACTGAATTTAAAATTTTCAAGTTCTTAATATATTTTACTTTTGTCATCAAACTACAGTTGCAATCACATAAATTATCAGATAATCTAATTGA-CTTTTTCTTTTG----AAGTCAACA---TTTTTCTTTCAAA------TAGTATATCATATTTTTAAACAATACTGTCTACTTTTT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     713657 325 -   1829203 ccTAGAAATTCTTATTTATTTAATATCTCTGTTCACTCCACCACAAAAAT--CAATTAA-TATAAGCCATCTTTAATAAGTAGGCTTAATTGTATTGATTAATTT-AAAAATTGTGTTGATTTAATGGATTACATCTATGAAGCTTTGTACACATACTTCATGGTTGAC-GAATTTAAAATTTT-AAGTTCTTAATATATTTTACTTTTGTCATCAAACTACAGTTGCAATCACATAAATTATCAGATAATCTAATTGA-CTTTTTCTTTTG----AAGTTGACA---TTTTTCTTTCAAA------TAGTATATCATATTTTTAAACAACACTGTCTATTTTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30880393 321 + 171630274 ccTAGAAATTC----TTATTAAATATCTCTGTACACTCCGCTACAAAGAT--CAATTAA-CATAAGCCATCTTTAATAAGCAGACTTAATTTTATTGATTAAATT-AAAAATTGTGTTGGTTTAATTGGTTATATCTATGAAGCTTTGTAAACATCCTTCATGGTTGACTAAATTTAAAATTTTT-AGTTCTTAATATATTTTACTTTTGTTAACAAACTATAATTGCAATGACATAAATTATCAGATAATCGAATTGA-CTTTTTCTCTTA----AAGTTGACA---TTTTTCTTTCAAA------TGGTGTATCATATTTTTAAAAAATATTGTCTAC-TTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            43642 322 -    750284 ccTAGAAATTC----TTACTAAATATCTCTGTTCACTCCGATACAAAAAT--CAATTAA-TATAAGCCATCTTTAATGAGCAGACataattttatttattaaatt-aaaaattGTGTTGGTTTAATTGGTTACATCTATGAAGCTTTGTAAACATCCTTCATGGTTGACTAAATTTAAAATTTTTAAGTTCTCAATATATTTTACTTTTGTCAACAAACTATAATTGCAGTCACATAAGTTATCAGATAATCTAATTGA-CTTTTTCTCATA----AAGTTGACA---TTTTTCTTTCAAA------TGGTGTATCATATTTTTAAACAATATTGTCTAC-TTTT
i saiBol1.JH378327         C 0 C 0
s otoGar3.GL873550           663775 326 +  18854210 CTTAGAAATTCTTATGTATTTAATATTTCTGTTCACTCAACCACAAAAACTGCTACTAGCTAGCAGCCATATTTATTCAGTAGGCTTAGTTTTACTAATTAAA---TAAAACTGTATT-ATTTAA----TTACATCTCTGTAG-TTTGTAAACGTCATTCACAGTTCATGaaatttaaattttttaagttctttatatttttta--tttgtcatcaaattat------aatcacataaattattagattatataattgatttttttCTCTTGTTATAAATTTCCACACTTCTTCTTTCAGACCCCCTTAGAATGT--TGTCTTTGGAAAACTCTAATTGCTTCCT
i otoGar3.GL873550         C 0 I 1986
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e manLeu1.NW_012106264v1      55552 1249 +    779361 I
e cerAty1.NW_012002513v1      22471 1426 -    811324 M
e panPan2.chr6             31116602   0 + 173848474 C
e panTro5.chr6             30693160   0 + 175400573 C

a score=174062.000000
s hg38.chr6_GL000254v2_alt  1846780 45 +   4827813 CCCCTTTGCTTTATGTATTTAATTTTATATATTAACTGATTCTTA
s gorGor5.CYUI01015528v1     623031 45 +   2037526 CCCCTTTGCTTTATGTATTTAATTTTATATATTAACTGATTCTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75298242 45 + 122973662 CCCCTTTGCTTTATGTATTTAATTTTATATATTAACTGATTCTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31215373 45 + 172585720 CCCCTTTGCTTTATGTATTTAATTTTATATATTAACTGATTCTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30504703 45 - 170955103 CCCCTTTGCTTTATGTATTTAATTTTATATATTAACTGATTCTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     788602 45 +   1495729 CCCCTTTGCTTTATGTATTTAATTTTATATATTAACTGATTCTTA
i macNem1.NW_012012100v1   C 0 M 4100
s chlSab2.chr17            30062174 45 -  71996105 CCCCTTTGCTTTATGTATTTAATTTTATATATTAACTGATTCTTA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     713982 45 -   1829203 CCCCTTTGCTTTATGTATTTAATTTTATATATTAACTGATTCTTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30880714 45 + 171630274 CCCCTTTGCTTTGTTTATTTAATTTTATCTATTAACTGATTCTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            43964 45 -    750284 CCCCTTTGATTTGTTTATTTAATTTGATATATTAACTGATTCTGA
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           664101 1986 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e manLeu1.NW_012106264v1      55552 1249 +    779361 I
e cerAty1.NW_012002513v1      22471 1426 -    811324 M
e panPan2.chr6             31116602  0 + 173848474 C
e panTro5.chr6             30693160  0 + 175400573 C

a score=225247.000000
s hg38.chr6_GL000254v2_alt  1846825 85 +   4827813 TTTTTCTACAATTAATCCAGCTTCTGTAATTTTTAATAT-TTCCTCTGGAAAGGATAAAGATAACATTGACATCTCTGTTAATATA
s gorGor5.CYUI01015528v1     623076 85 +   2037526 TTTTTCTACAATTAATTCAGCTTCTGTAATTTTTAATAT-TTCCTCTGGAAAGGATAAAGATAATATTGACATCTCTGTTAATATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75298287 86 + 122973662 TTTTTCTACAATTAATCCAGCTTCTGTAATTTTTAATATCTCCCTCTGGAAAGGATAAAGATAACATTGACATCTCTGTTAATATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31215418 86 + 172585720 TTTTTCTACAACTAATCCAGCTTCTGCAATTTTAAATATTTCCCTCTGGAAAGGATAAAGATAATATTGACATCTCTGTTAAAATG
i rheMac8.chr4             C 0 I 314
s macFas5.chr4             30504748 86 - 170955103 TTTTTCTACAACTAATCCAGCTTCTGCAATTTTAAATATTTCCCTCTGGAAAGGATAAAGATAATATTGACATCTCTGTTAAAATG
i macFas5.chr4             C 0 I 314
s chlSab2.chr17            30062219 86 -  71996105 TTTTTCTACAACTAATCGAGCTTCTGCAATTTTAAATATTTCCCTCTGGAAAGGATAAAGATAATATTGACATCTCTGTTAAAATG
i chlSab2.chr17            C 0 I 332
s colAng1.NW_012115577v1     714027 86 -   1829203 TTTTTCTACAACTAATCCAGCTTCTGCAATTTTAAATATTTCCCTCTGGAAAGGATAAAGATAATATTGACATCTCTGTTAAAATG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30880759 75 + 171630274 TTTTTCTACAATTAATCCAGCTTCTGCAATCACTAATATTTCCCTCTGGAAAGG-----------ATTGACATCTCTGTTAAAATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            44009 75 -    750284 TTTTTCTGCAATGAATCCAGCTTCTGCAATCATTAATATTTCCCTCTGGAAAGG-----------ATTGACATCTCTGTTAAAACA
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           664101 1986 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e manLeu1.NW_012106264v1      55552 1249 +    779361 I
e cerAty1.NW_012002513v1      22471 1426 -    811324 M
e macNem1.NW_012012100v1     788647 4100 +   1495729 M
e panPan2.chr6             31116602  0 + 173848474 C
e panTro5.chr6             30693160  0 + 175400573 C

a score=269213.000000
s hg38.chr6_GL000254v2_alt  1846910 78 +   4827813 TAAGTTATTAACGTCAAATTTCTGGGAAAAAAAGTTTATGTCCTAAACACTTACTACTCCCATTTCACAACTTCTATT
s gorGor5.CYUI01015528v1     623161 78 +   2037526 TAAGTTATTAATGTCAGATTTCTGGGAAAAAAAGTTTATGTCCTAAACACTTACTACTCCCATTTCACAACTTCTATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75298373 78 + 122973662 TAAGTTATTAATGTCAAATTTCTGGGAAAAAAAGTTTATGTCCTAAACACTTACTACTCCCATTTCACAACTTCTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31215818 78 + 172585720 TAAGTTATTAATGTCAAATTTCTGGGAAAAAAAGGTTATGTCCCAAACACTTACCACTCCCATTTCACAACTTCTATT
i rheMac8.chr4             I 314 I 308
s macFas5.chr4             30505148 78 - 170955103 TAAGTTATTAATGTCAAATTTCTGGGAAAAAAAGGTTATGTCCCAAACACTTACCACTCCCATTTCACAACTTCTATT
i macFas5.chr4             I 314 I 308
s chlSab2.chr17            30062637 78 -  71996105 TAAGTTATTAATGTCAAATTTCTGGGAAAAAAAGTTTATGTCCCAAACACTTACCACTCCCATTTCACAACTTTTATT
i chlSab2.chr17            I 332 C 0
s manLeu1.NW_012106264v1      56801 78 +    779361 TAAGTTATTAATGTCAAATTTCTGGGAAAAAAAGTTTATGTCCCAAACACTTACCACTCCCATTTCACAACTTCTATT
i manLeu1.NW_012106264v1   I 1249 C 0
s colAng1.NW_012115577v1     714113 72 -   1829203 TAAATTATTAATGTCAAATTTCTGGGGAAAAACATTTATGTCCCAA------ACCACTCCCATTTCACAACTTCTATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30880834 78 + 171630274 TAAGTAATTAAAGTCAAATTTCTGGGGAAAAAAGTTTGTGTCTCAGATACTTAGTATTCCCATTTCACAACTTCTGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            44084 75 -    750284 TAAGTAATTAGTGTCAAATTTCTGGG---AAAAACTTTTGTGTCAAATACTTACCACTCCCATTTCACAACTTCTAGT
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           664101 1986 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e cerAty1.NW_012002513v1      22471 1426 -    811324 M
e macNem1.NW_012012100v1     788647 4100 +   1495729 M
e panPan2.chr6             31116602  0 + 173848474 C
e panTro5.chr6             30693160  0 + 175400573 C

a score=228653.000000
s hg38.chr6_GL000254v2_alt  1846988 64 +   4827813 AAAGT-GAATATAAAAGGTTTGGTACAATTCCCTAATGCTCTTGGCATCCCACTATTACAGAGTG
s gorGor5.CYUI01015528v1     623239 64 +   2037526 AAAGT-GAATATAAAAGGTTTGGTACAATTCCCTAATGCTCTTGGCATCCCACTATTACAGAGTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75298451 63 + 122973662 AAAGTAGAATATAAAAGGTTTGGTACAAT--CATAATGCTCTTGGCATCCCACTATTACAGAGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31216204 64 + 172585720 AAAGT-GAATATAAAAGGTTTGGTACAATTTCCTAATGTTCTTGACATTCCACTATTAAAGAGTG
i rheMac8.chr4             I 308 C 0
s macFas5.chr4             30505534 64 - 170955103 AAAGT-GAATATAAAAGGTTTGGTACAATTTCCTAATGTTCTTGACATTCCACTATTAAAGAGTG
i macFas5.chr4             I 308 C 0
s chlSab2.chr17            30062715 64 -  71996105 AAAGT-GAATATAAAAGGTTTGGTACAATTTCCTAATGTTCTTGACATTCCACTATTAAAGAGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      56879 64 +    779361 AAAGT-GAATATAAAAGGTTTGGTACAATTTCCTAATGTTCTTGACATTCCACTATTAAAGAGTA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     714185 64 -   1829203 AAAGT-GAATATAAAAGGTTTGGTACAATTTCCTAATGTTCTTGACATCCCACTATTAAAGAGTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30880912 64 + 171630274 ACAGT-AAATATAAAAGGTTTGGTACAATTTCCAAATGCTCTTGGCATCCCATTATTACAGAGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            44159 64 -    750284 ACAGT-GAAGATAAAAGGTTTGGTACAATTTCCAAATGCTCTTGGCATCCCGCTATTACAGAGTG
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           664101 1986 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e cerAty1.NW_012002513v1      22471 1426 -    811324 M
e macNem1.NW_012012100v1     788647 4100 +   1495729 M
e panPan2.chr6             31116602  0 + 173848474 C
e panTro5.chr6             30693160  0 + 175400573 C

a score=209917.000000
s hg38.chr6_GL000254v2_alt  1847052 45 +   4827813 CCCAAATATGCTTTCTAGTTTC-ATGACTTCAATTCCAGTATCTTT
s gorGor5.CYUI01015528v1     623303 45 +   2037526 CCCAAATATGCTTTCTAGTTTC-ATGACTTCAATTCCAGTATCTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75298514 45 + 122973662 CCCAAATATGCTTTCTAGTTTC-ATGACTTCAATTCCAGTATCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31216268 45 + 172585720 CCCAAATATGCTTTCTAGTTTC-GTGACTTCAATCCCAGTATCTTT
i rheMac8.chr4             C 0 I 321
s macFas5.chr4             30505598 45 - 170955103 CCCAAATATGCTTTCTAGTTTC-GTGACTTCAATCCCAGTATCTTT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      23950 46 -    811324 CCCAAATATGCTTTCTAGTTTCAATGACTTCAATCCCAGTATCTTT
i cerAty1.NW_012002513v1   M 1426 C 0
s chlSab2.chr17            30062779 45 -  71996105 CCCAAATATGCTTTCTAGTTTC-GTAACTTCAATCCCAGTATCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      56943 45 +    779361 CCCAAATATGCTTTCTAGTTTC-GTGACTTCAATCCCAGTATCTTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     714249 45 -   1829203 CCCAAATATGCTTTCTAGTTTC-ATGACTTCAATTCCATTATCTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30880976 45 + 171630274 CCCAAATATTCTTTCTAGTTTC-ATGACATCAATTCCAGTATCTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            44223 45 -    750284 CCCAAATATTCTTTCGAGTTTC-ATGACTTCAATTCCAGTATCTTT
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           664101 1986 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e macNem1.NW_012012100v1     788647 4100 +   1495729 M
e panPan2.chr6             31116602  0 + 173848474 C
e panTro5.chr6             30693160  0 + 175400573 C

a score=675994.000000
s hg38.chr6_GL000254v2_alt  1847097 169 +   4827813 AGAAATATT-TTTAATTTT--CCC-AAATGCTTA-TTTCATATGTAGTTGTGAATAT-AAAGTTTAGTGAGGCAAATA-TTTGAAGTAATTTTTC-ATTTAAACATTTTACT--GCATCATCCTGACATCACTGAATACAGTAACT--TATATAGTAC-CAATTTAAAATATAAAGAGACtt
s gorGor5.CYUI01015528v1     623348 169 +   2037526 AGAAATATT-TTTAATTTT--CCC-AAATGCTTA-TTTCATATGTAGTTGTGAATAT-AAAGTTTAGTGAGGCAAATA-TTTGAAGTAACTTTTC-ATTTAAACATTTTACT--GCATCATCCTGACATCATTGAATACAGTAACT--TATATAGTAC-CAATTTAAAATATAAAGAGACtt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75298559 170 + 122973662 AGAAATATT-TTTAATTTT--CCCAAAATGCTTA-TTTCATGTGTAGCTGTGAATAT-GAAGTTTAGTGAGGCAAATA-TTTGAAGTAATTTTTC-ATTTAAACATTTTACT--GCATCATCCTGGCATCACTGAATACAGTAACT--TATATACTAC-CAATTTAAAATATAAGGAGACtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31216634 168 + 172585720 agaaaTATT-TTTAATTTT--TCC-AAATGCTTA-TTTCATGTGTAGTTGT-AATAT-AAAGGTTAGTGAAGCAAATA-TTTAAAGTAATTTTTC-ATTTAAACATTTTACT--GCATCATCCTGACATCATTGAATACAGTAATT--TATATAGTAC-CAATTTAAAATATACAGAGACtt
i rheMac8.chr4             I 321 C 0
s macFas5.chr4             30505643 168 - 170955103 AGAAATATT-TTTAATTTT--TCC-AAATGCTTA-TTTCATGTGTAGTTGT-AATAT-AAAGGTTAGTGAAGCAAATA-TTTAAAGTAATTTTTC-ATTTAAACATTTTACT--GCATCATCCTGACATCATTGAATACAGTAACT--TATATAGTAC-CAATTTAAAATCTACAGAGACtt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      23996 178 -    811324 AGAAATATTGTTTAATTTTTCTCC-AAATGCTTGTTTTCATGTGTAGTTGT-AATATAAAAGGTTGTCGAAGGCAATACTTTAAAGTAATTTTTCAATTTAAACA-TTTACTAAGCATCATCCTGACATCATTGAATACAGTAACTTGTATATAGTACGCAATTTAAAATATACAG-GACtt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30062824 162 -  71996105 AGAAATATT-TTTAATTTT--CCC-AAATGCTTA-TTTCATGTGTAGTTTT-AATAT-AAAGGTT-GTGAAGCAAATA-TT-----TAATTTTTC-ATTTAAACATTTTACT--GTATCATCCTGACATCATTGAATACAGTAACT--TATATAGTAC-CAATTTAAAATATACAGACACtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      56988 167 +    779361 AGAAATATT-TTTAATTTT--CCC-AAATGCTTG-TTTCATGTGTAGTTGT-AATAT-AAAGGTT-GTGAAGCAAATA-TTTAAAGTAATTTTTC-ATTTAAACATTTTACT--GCATCATCCTGACATCATTGAATACAGTAACT--TATATAGTAC-CAATTTAAAATATACAGAGACtt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     714294 168 -   1829203 AGAAATATT-TTTAATTTT--CCC-AAATGCTTA-TTTCATGTGTAGTTGT-AATAT-AAAGGTTAGTGAGGCAAATA-TTTAAAGTAATTTTTC-ATTTAAACATTTTACT--GCATCATCCTGACGTCACTGAATACAGTAACT--TATATAGTAC-CAATTTAAAATATACAGAGACtt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30881021 169 + 171630274 GGAAATATT-TTTAAATTC--CCC-AAATGTTTA-TTTCATGTGTAGTTGTCAATAT-AGAGTTTAGTGAAGCAAATA-TTTAAAGTAATTTTTC-ATTTAAACCTTTTACT--GTGTCATCCTGACATCACTGAAGATAGTAACT--TATACAGTAG-CAATTGAAAATATACAGAGACTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            44268 163 -    750284 AGAAATATT-TTTAATTTT--CCT-AAATGTTTA-TTTCATGTGTAGTTGTGAATAT-AGAGTTTTGTGAAGCAAATA-GTTAA------TTTTC-ATTTAAACATTTTATT--GCATCATCCTGACATCACTGAATATAGTAACT--TATATAGTAC-CAATTTAAAATACACAGAGACTT
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           664101 1986 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e macNem1.NW_012012100v1     788647 4100 +   1495729 M
e panPan2.chr6             31116602   0 + 173848474 C
e panTro5.chr6             30693160   0 + 175400573 C

a score=4095.000000
s hg38.chr6_GL000254v2_alt  1847266 1 +   4827813 t
s gorGor5.CYUI01015528v1     623517 1 +   2037526 t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75298729 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31216802 1 + 172585720 t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30505811 1 - 170955103 t
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      24174 1 -    811324 t
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30062986 1 -  71996105 t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      57155 1 +    779361 t
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     714462 1 -   1829203 t
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            44431 1 -    750284 T
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           664101 1986 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e calJac3.chr4             30881190 0 + 171630274 C
e macNem1.NW_012012100v1     788647 4100 +   1495729 M
e panPan2.chr6             31116602 0 + 173848474 C
e panTro5.chr6             30693160 0 + 175400573 C

a score=473599.000000
s hg38.chr6_GL000254v2_alt  1847267 173 +   4827813 tt--------ttttttttt---tttttgagacagattgtcgctctgtcaccaggctggagtgcagtggcataatctctgctcactgcaaactctgcctcc-caggtt--caagcgattctcctgcctcagcctcc-caagcagctaggactataggtgcatgccaccacgcccagctaatttttgta-t
s gorGor5.CYUI01015528v1     623518 168 +   2037526 tt--------ttttttttt--------gagacagagtgtcgctctgtcaccaggctggagtgcagtggcataatctctgctcactgcaaactctgcctcc-cgggtt--caagcgattctcctgcctcagcctcc-caagcagctaggactataggcgcatgccaccacgcccagctaatttttgta-t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75298730 166 + 122973662 tt--------ttttttt----------gagacagtgtgtcgctctgtcacgaggctggagtgcagtggcacaatctctgctcactgcaaactctgcctcc-cgggtt--caagcgattctcctgcctcagcctcc-caagcagttaggactataggcgcatgccaccacgcccagctaacttttgta-t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31216803 179 + 172585720 ttatt-----ttttattttatttttttgagacagagtctcgctctgtcaccaggctggagtgcagtggcataatctctgctcactgcaaactctgcctcc-cgggtt--caagcaattctcctgcctcagcctca-caagcagctaggactataggcgcatgccaccacgcccagctaatttttgtat-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30505812 178 - 170955103 ttatt-----ttttattttatttttttgagacagagtctcgctctgtcaccaggctggagtgcagtggcataatctctgctcactgcaaactctgcctcc-cgggtt--caagcaattctcctgcctcagcctca-caagcagctaggactataggcgcatgccaccacgcccagctaatttttgta--
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      24175 182 -    811324 ttattttttattttattttatttttttgaggacgaatctcgctctgtcacca-gttggagtgcagtggca-aatctctgctcactgcaaactctgcctccgcgagtttccaagcaattctcctgcctcagcctcaccaagcagctaggctaacgggcatg---caccacgcccagctaatttttgta--
i cerAty1.NW_012002513v1   C 0 I 1
s chlSab2.chr17            30062987 182 -  71996105 tta-tttttattttattttatttttttgagacagagtctcgctctgtcaccaggctggagtgcagtggcacaatctctgctcactgcaaactctgccttc-caggtt--caagcaattctcctgcctcagcctca-caagcagctaggactataggcacatgccaccatgcacagctaatttttgta--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      57156 183 +    779361 ttattttttattttattttatttttttgagacagagtctcgctctgtcaccaggctggagtgcagtggcacaatctctgctcactgcaaactctgcctcc-cgagtt--caagcaattctcctgcctcagcctca-caagcagctaggactataggtgcatgccaccacgcccagctaatttttgta--
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     714463 183 -   1829203 ttattttttattttattttatttttttgagacagagtctcgctctgtcaccaggctggagtgcagtggcacaatctctgctcactgcaaattctgcctcc-caggtt--caagcgattctcctgcctcagcctca-caagcagctaggactataggcgcacgccaccatgcccagctaatttttgta--
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            44432   0 -    750284 C
e otoGar3.GL873550           664101 1986 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e calJac3.chr4             30881190   0 + 171630274 C
e macNem1.NW_012012100v1     788647 4100 +   1495729 M
e panPan2.chr6             31116602   0 + 173848474 C
e panTro5.chr6             30693160   0 + 175400573 C

a score=275484.000000
s hg38.chr6_GL000254v2_alt  1847440 75 +   4827813 -ttttttgtagagac--agggtttcaccatgttggccaggatggt-ctcaatctcttgacctcgtgatctgcctgcctt
s gorGor5.CYUI01015528v1     623686 74 +   2037526 -tttta-gtagagac--agggtttcaccatgttggccaggatggt-ctcaatctcttgacctcgtgatctgcctgcctt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75298896 74 + 122973662 -tttta-gtagagac--ggggtttcaccatgttggctaggatggt-cttaatctcttgacctcgtgatctgcctgcctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31216982 74 + 172585720 -tttta-gtagagat--ggggtttcaccatgttggccaggatggt-ctcgatctcttgacctcgtgatctgcctgcgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30505990 75 - 170955103 ttttta-gtagagat--ggggtttcaccatgttggccaggatggt-ctcgatctcttgacctcgtgatctgcctgcgtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     792751 75 +   1495729 ttttta-gtagagat--ggggtttcaccatgttggccaggatggt-ctcgatctcttgacctcgtgatctgcctgcgtt
i macNem1.NW_012012100v1   M 4100 C 0
s cerAty1.NW_012002513v1      24358 78 -    811324 ttttta-gtaaggatgcgggtttccaccatgttggccaggatggtccccgatctcttgacctcgtgatctgcctgcatt
i cerAty1.NW_012002513v1   I 1 C 0
s chlSab2.chr17            30063169 75 -  71996105 ttttta-gtagagat--ggggtttcaccatgttggccaggatggt-ctcgatctcttgacctcgtgatctgcctgcatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      57339 75 +    779361 ttttta-gtagagat--ggggtttcaccatgttggccaggatggt-ctcgatctcttgacctcgtgatctgcctgcatt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     714646 75 -   1829203 ttttta-gtagagat--ggtgtttcaccatgttggccaggatggt-cttgatcacttgacctcgtgatctgcctgcctc
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            44432  0 -    750284 C
e otoGar3.GL873550           664101 1986 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e calJac3.chr4             30881190  0 + 171630274 C
e panPan2.chr6             31116602  0 + 173848474 C
e panTro5.chr6             30693160  0 + 175400573 C

a score=348128.000000
s hg38.chr6_GL000254v2_alt  1847515 61 +   4827813 ggcctcccaaagtgctgggattacaggcatgagccattgtgcctggccAT-ATAGAGACT-TC
s panTro5.chr6             30693160 61 + 175400573 ggcctcccaaagtgctgggattacaggcatgagccattgtgcctggccAT-ATAGAGACT-TC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31116602 61 + 173848474 ggcctcccaaagtgctgggattacaggcatgagccattgtgcctggccAT-ATAGAGACT-TC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     623760 61 +   2037526 ggcctcccaaagtgctgggattacaggcatgagccattgtgcctggccAT-ATAGAGACT-TC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75298970 61 + 122973662 ggcctcccaaagtgctgggattacaggtataagccaccgtgcctgcccAT-GTAGAGACT-TC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31217056 61 + 172585720 ggcctcccaaagtgctgggattacaggcatgagccaccatgcctggccAT-ACAGAGACT-TC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30506065 61 - 170955103 ggcctcccaaagtgctgggattacaggcatgagccaccatgcctggccAT-ACAGAGACT-TC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     792826 61 +   1495729 ggcctcccaaagtgctgggattacaggcatgagccaccacgcctggccAT-ACAGAGACT-TC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      24436 63 -    811324 ggcctcccaaagtgctgggattacaggcatgagccaccacgcctggccATCACAGAGACTGTC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30063244 61 -  71996105 ggcctcccagagtgctgggattacaggcatgagccaccacgcctggccAT-ACAGAGACT-TC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      57414 61 +    779361 ggcctcccaaagtgctgggattacaggcatgagccaccacgcctggccAT-ACAGAGACT-TC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     714721 61 -   1829203 ggcctcccaaagtgctgggattacaggcatgagccaccacgcctggccAT-ACAGAGACT-TC
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            44432  0 -    750284 C
e otoGar3.GL873550           664101 1986 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e calJac3.chr4             30881190  0 + 171630274 C

a score=1085003.000000
s hg38.chr6_GL000254v2_alt  1847576 161 +   4827813 TCTAAAAC-TTTGGCT---TCTCTGAACTTTC-TCTGTGACATATACT----AGAACCATCTGTAGCAT----TGTGTAACCATTTCACATCAAAACCA--CTTTTCTTGAGCACTGATGAGTAAGTAAGCTTGATACATCATTTCAGTTCCTCAGATGAGCAAAAATCATTAGTT-----
s panTro5.chr6             30693221 156 + 175400573 TCTAAAAC-TTTGGCT---TCTCTGAACTTTC-TCTGTGACATATACT----AGAACCATCTGTAGCAT----TGTGTAACCATTTCACATCAAAACCA--CTTTTCTTGAGCACTGATGAGTAAGTAAGCTTGATACATCATTTCAGTTCCTCAGATGAGCAAAAATCAT----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31116663 156 + 173848474 TCTAAAAC-TTTGGCT---TCTCTGAACTTTC-TCTGTGACATATACT----AGAACCATCTGTAGCAT----TGTGTAACCATTTCACATCAAAACCA--CTTTTCTTGAGCACTGATGAGTAAGTAAGCTTGATACATCATTTCAGTTCCTCAGATGAGCAAAAATCAT----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     623821 156 +   2037526 TCTAAAAC-TTTGGCT---TCTCTGAACTTTC-TCTGTGACATATACT----AGAACCATCTGTAGCAT----TGTGTAACCATTTCACATCAAAACCA--CTTTTCTTGAGCACTGATGAGTAAGTAAGCTTGATACATCATTTCAGTTCCTCAGATGAGCAAAAATCAT----------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75299031 156 + 122973662 TCTAAAAC-TTTGGCT---TCTCTGAACTTTC-TCTGTGACATATGCT----AGAACCATCTGTAGCAT----TGTGTAACCATTTCACATCAAAACCA--CTTTTCTTGAGCACTGATGAGTAAGTAAGCTTGATACATCATTTGAGTTCCTCAGATGAGCAAAAATCAT----------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31217117 153 + 172585720 TCTAAAAC-TTTGGC----ACCCTGAACTTTC-TCTGTGACATATACT----AGAACCATCTGTAGCAT----TGTATAACCGTTTCACATCAAAACCA--TTTTTCTTGAGCACTGATGAGTAAGTAAGCTTG--ATATCATTTGAGTTCCTCAGATGAGCAAAAATCAT----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30506126 153 - 170955103 TCTAAAAC-TTTGGC----ACCCTGAACTTTC-TCTGTAACATATACT----AGAACCATCTGTAGCAT----TGTATAACCGTTTCACATCAAAACCA--TTTTTCTTGAGCACTGATGAGTAAGTAAGCTTG--ATATCATTTGAGTTCCTCAGATGAGCAAAAATCAT----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     792887 153 +   1495729 TCTAAAAC-TTTGGC----ACCCTGAACTTTC-TCTGTGACATATACT----AGAACCATCTGTAGCAT----TGTATAACCGTTTCACATCAAAACCA--TTTTTCTTGAGCACTGATGAGTAAGTAAGCTTG--ATATCATTTGAGTTCCTCAGATGAGCAAAAATCAT----------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      24499 165 -    811324 TCTAAAACTTTTGGC----ACCCTGAACTTTCGTCTGTAACATGTATTTTAAAGAACCATCTGTAGCATTGTATGTATAACCGTTTCACATCAAAACCA--TTTTTCTTGAGCACTGATGAGTAAGTAAGCTTGATATATCATTTGAGTTCCTCAGATGAGCAAAAATCAT----------
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30063305 153 -  71996105 TCTAAAAC-TTTGGC----ACCCTGAACTTTC-TCTGTGACATATACT----AGAACCATCTGTAGCAT----TGTATAACCGTTTCACATCAAAACCA--TTTTTCTTGAGCACTGATGAGTAAGTAAGCTTG--ATATCATTTGAGTTCCTCAGATGAGCAAAAATCAT----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      57475 155 +    779361 TCTAAAAC-TTTGGC----ACCCTGAACTTTC-TCTGTAACATATACT----AGAACCATCTGTAGCAT----TGTATAACCGTTTCACATCAAAACCA--TTTTTCTTGAGCACTGATGAGTAAGTAAGCTTGATATATCATTTGAGTTCCTCAGATGAGCAAAAATCAT----------
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     714782 153 -   1829203 TCTAAAAC---TGGC----ACCCTGAACTTTC-TCTGTGACATATACT----AGAACCATCTGTAACAT----TGTGTAACCGTTTCACATCAAAACCA--TTTTTCTTGAGCACTGATGAGTAAGTAAGCTTGATACATCATTCGAGTTCCTCAGATGAGCAAAAATCAT----------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30881190 159 + 171630274 TCTGAAAC-TTTGACTGGCACCCTGAACTTTC-TCTGTGACATATATT----A-AACCATCTGTAGCAT----CGTGTAACCATTTCACATCAAAACCA--TTTTTCTTGAGAATTGATG----AGTAAGCTTGATAAATCATTTGAGTTCCTCAGATGAACAAAAATCAC-----CAGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            44432 162 -    750284 TCTGAAAC-TTTGACTGGCACCCTGAAATTTA-TCTGTGACATATATT----AGAACCATCTGTAGCAT----CCTGTAACCATTTCCCATCAAAACCATTTTTTTTTTGAGAATTGATG----AGTAAGCTTGATAAATCATTTGAGTTCCTCGGATGAACAAAAATCAC-----CAATT
i saiBol1.JH378327         C 0 I 345
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           664101 1986 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I

a score=182.000000
s hg38.chr6_GL000254v2_alt  1847737 2 +   4827813 TT
s calJac3.chr4             30881349 2 + 171630274 tt
i calJac3.chr4             C 0 I 330
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            44594 345 -    750284 I
e otoGar3.GL873550           664101 1986 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e colAng1.NW_012115577v1     714935 0 -   1829203 C
e manLeu1.NW_012106264v1      57630 0 +    779361 C
e chlSab2.chr17            30063458 0 -  71996105 C
e cerAty1.NW_012002513v1      24664 0 -    811324 C
e macNem1.NW_012012100v1     793040 0 +   1495729 C
e macFas5.chr4             30506279 0 - 170955103 C
e rheMac8.chr4             31217270 0 + 172585720 C
e nomLeu3.chr1a            75299187 0 + 122973662 C
e gorGor5.CYUI01015528v1     623977 0 +   2037526 C
e panPan2.chr6             31116819 0 + 173848474 C
e panTro5.chr6             30693377 0 + 175400573 C

a score=0.000000
s hg38.chr6_GL000254v2_alt  1847739 2 +   4827813 AT
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            44594 345 -    750284 I
e otoGar3.GL873550           664101 1986 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e calJac3.chr4             30881351 330 + 171630274 I
e colAng1.NW_012115577v1     714935 0 -   1829203 C
e manLeu1.NW_012106264v1      57630 0 +    779361 C
e chlSab2.chr17            30063458 0 -  71996105 C
e cerAty1.NW_012002513v1      24664 0 -    811324 C
e macNem1.NW_012012100v1     793040 0 +   1495729 C
e macFas5.chr4             30506279 0 - 170955103 C
e rheMac8.chr4             31217270 0 + 172585720 C
e nomLeu3.chr1a            75299187 0 + 122973662 C
e gorGor5.CYUI01015528v1     623977 0 +   2037526 C
e panPan2.chr6             31116819 0 + 173848474 C
e panTro5.chr6             30693377 0 + 175400573 C

a score=363747.000000
s hg38.chr6_GL000254v2_alt  1847741 54 +   4827813 ATCATCAGTTTTATAAGTCTGAAATTTAGTATTTAAGTCACTAATAAAAACACA
s panTro5.chr6             30693377 49 + 175400573 -----CAATTTTATAAGTCTGAAATTTAGTATTTAAGTCACTAATAAAAACACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31116819 49 + 173848474 -----CAATTTTATAAGTCTGAAATTTAGTATTTAAGTCACTAATAAAAACACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     623977 49 +   2037526 -----CAGTTTTATAAGTCTGAAATTTAGTATTTAAGTCACTAATAAAAACACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75299187 49 + 122973662 -----CAGTTTTATAAGTCTGAAATTTAGTATTTAAGTCACTAATAAAAACACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31217270 49 + 172585720 -----CAGTTTTGTAAGTCTGCAATTCAGTATTTAAGTCACTGATAAAAACACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30506279 49 - 170955103 -----CAGTTTTGTAAGTCTGCAATTCAGTATTTAAGTCACTGATAAAAACACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     793040 49 +   1495729 -----CAGTTTTGTAAGTCTGCAATTCAGTATTTAAGTCACTGATAAAAACACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      24664 49 -    811324 -----CAGTTTTGTAAGTCTGCAATTCAGTATTTAAGTCACTGATAAAAACACA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30063458 49 -  71996105 -----CAGTTTTGTAAGTCTGCAATTCAGTATTTAAGTCACTGATAAAAACACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      57630 49 +    779361 -----CAGTTTTGTAAGTCTGCAATTCAGTATTTAAGTCACTGATAAAAACACA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     714935 49 -   1829203 -----CAGTTTTGTAAGTCTGCAATTCAGTATTTAAGTCACTGATAAAAACACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30881681 54 + 171630274 ATCATCAGTTTTATAACTCTGCAATTTAATGTTTAAGTAACTGATAAAAACACA
i calJac3.chr4             I 330 C 0
s saiBol1.JH378327            44939 54 -    750284 ATCATCAGTTTTATAAGTCTGCAATTTAAAAAGTAAGTCACTGATAAAAACACA
i saiBol1.JH378327         I 345 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           664101 1986 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I

a score=15666.000000
s hg38.chr6_GL000254v2_alt  1847795 8 +   4827813 TTTTTGTg
s panTro5.chr6             30693426 8 + 175400573 TTTTTGTg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31116868 8 + 173848474 TTTTTGTg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     624026 8 +   2037526 TTTTTGTg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75299236 8 + 122973662 TTTTTGTg
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30881735 8 + 171630274 TTTTTGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            44993 8 -    750284 TTTTTGTG
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           664101 1986 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e colAng1.NW_012115577v1     714984 0 -   1829203 C
e manLeu1.NW_012106264v1      57679 0 +    779361 C
e chlSab2.chr17            30063507 0 -  71996105 C
e cerAty1.NW_012002513v1      24713 0 -    811324 C
e macNem1.NW_012012100v1     793089 0 +   1495729 C
e macFas5.chr4             30506328 0 - 170955103 C
e rheMac8.chr4             31217319 0 + 172585720 C

a score=265012.000000
s hg38.chr6_GL000254v2_alt  1847803 296 +   4827813 gccgggcgtggtggctcacacctgtaatcccagcactttgagaggccaaggtgtgcggatcacgaggtcaggagatcaagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagccgggcatggtggcaggcgcctgtagtcccagctgctcgggaggctgaggcaggagaatggtgtgaacctgggaggtggagcttgcagtgaaccgagatcgcgccactgcactccagcctaggtgacagagtgagactccgtctcaaaaaaaaaaaa---TTTT
s panTro5.chr6             30693434 298 + 175400573 gccgggcgtggtggctcacacctgtaatcccagcactttgagaggccaaggtgtgcggatcacgaggtcaggagatcaagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagccgggcatggtggcaagcgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacctgggaggtggagcttgcagtgagctgagattgcgccactgcactccagcctaggtgacagagtgagactccgtctcaaaaaaaaaaaa-aaTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31116876 296 + 173848474 gccgggcgtggtggctcacacctgtaatcccagcactttgagaggccaaggtgtgcggatcacgaggtcaggagatcaagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaacaattagccgggcatggtggcaagcgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacctgggaggtggagcttgcagtgagctgagattgcgccactgcactccagcctaggtgacagagtgagactccgtctcaaaaaaaaaaaa---aaTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     624034 298 +   2037526 gccgggcgtggtggctcacacctgtaatcccagcactttgagaggccaaggtgtgcggatcacgaggtcaggagatcaagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaattagccgggcatggtggcaggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggtgtgaacctgggaggtggagcttgcagtgagccgagattgcgccactgcactccagcctaggtgacagagtgagactccgtctcaaaaaaaaaaaa-aaaTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75299244 299 + 122973662 gccgggtgcggtggctgacacctgtaatcccagcactttgggagaccaaggcgtgcggatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaacttagccaggcatggtggtgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacctgggaggtggagcttgcagtgagccgagattgcgccactgcactccagcctaggcgtcagagtgagactccgtctcaaaaaaaaaaaaaaaaaTT
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            45001   0 -    750284 C
e otoGar3.GL873550           664101 1986 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e calJac3.chr4             30881743   0 + 171630274 C
e colAng1.NW_012115577v1     714984   0 -   1829203 C
e manLeu1.NW_012106264v1      57679   0 +    779361 C
e chlSab2.chr17            30063507   0 -  71996105 C
e cerAty1.NW_012002513v1      24713   0 -    811324 C
e macNem1.NW_012012100v1     793089   0 +   1495729 C
e macFas5.chr4             30506328   0 - 170955103 C
e rheMac8.chr4             31217319   0 + 172585720 C

a score=48642.000000
s hg38.chr6_GL000254v2_alt  1848099 8 +   4827813 TTTTTGTT
s panTro5.chr6             30693732 8 + 175400573 TTTTTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31117172 8 + 173848474 TTTTTGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     624332 8 +   2037526 TTTTTGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75299543 8 + 122973662 TTTTTGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31217319 8 + 172585720 TTTTTGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30506328 8 - 170955103 TTTTTGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     793089 8 +   1495729 TTTTTGTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      24713 8 -    811324 TTTTTGTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30063507 8 -  71996105 TTTTTGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      57679 8 +    779361 TTTTTGTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     714984 8 -   1829203 TTTTTGTT
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            45001 0 -    750284 C
e otoGar3.GL873550           664101 1986 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e calJac3.chr4             30881743 0 + 171630274 C

a score=730554.000000
s hg38.chr6_GL000254v2_alt  1848107 99 +   4827813 ACATAATTGAAGCTTTCTTGGTGATGATTGATTGCCTAGATTTATAAATTTACTAAAAAGTTGTCTCATCATGGTAGATATACGTTTTGTGACCATTGT
s panTro5.chr6             30693740 99 + 175400573 ACATAATTGAAGCTTTCTTGGTAATGATTGATTGCCTGGATTTATAAATTTACTAAAAAGTTGTCTCATCATGGTAGATATACGTTTTGTGACCATTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31117180 99 + 173848474 ACATAATTGAAGCTTTCTTGGTAATGATTGATTGCCTGGATTTATAAATTTACTAAAAAGTTGTCTCATCATGGTAGATATACGTTTTGTGACCATTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     624340 99 +   2037526 ACATAATTGAAGCTTTCTTGGTAATGATTGATTGCCTAGATTTATAAATTTACTAAAAAGTTGTCTCATCATGGTAGATATACGTTTTGTGACCATTGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75299551 99 + 122973662 ACATAATTGAAGCTTTCTTGGTAATGATTGATTGCCTAGATTTATAAATTTACTAAAAAGTTGTCTCATCATGGTAGATATACGTTTTGTGACCATTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31217327 99 + 172585720 ACGTAATTGAAGCTTTCTTGGTAATGACTGATTGCCTAGATTTATAAATTTCCAAAAAAGTTGTCTCATCATGGTAGATACACATTTGCCTACCATTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30506336 99 - 170955103 ACGTAATTGAAGCTTTCTTGGTAATGACTGATTGCCTAGATTTATAAATTTCCAAAAAAGTTGTCTCATCATGGTAGATACACATTTGCCTACCATTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     793097 99 +   1495729 ACGTAATTGAAGCTTTCTTGGTAATGACTGATTGCCTAGATTTATAAATTTCCAAAAAAGTTGTCTCATCATGGTAGATACACATTTGCCTACCATTGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      24721 99 -    811324 ACGTAATTGAAGCTTTCTTGGTAATGACTGATTGCCTAGATTTATAAATTTACAAAAAAGTTGTCTCATCATGGTAGATATACATTTGCCTACCATTGT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30063515 99 -  71996105 ACGTAATTGAAGCTTTCTTGGTAATGACTGATCGCCTAGATCTATAAATTTACTAAAAAGTTGTCTCATCATGGTAGATATACATTTTCCTACCATTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      57687 99 +    779361 ACGTAATTGAAGCTTTCTTGGTAATGACTGATTGCCTAGATTTATAAATTTACAAAAAAGTTGTCTCATCATGGTAGATATACATTTGCCTACCATTGT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     714992 99 -   1829203 ACATAATTGAAGCTTTCTTGGTAATGACTGATTGCCTAGATTTATAAATTTACTAAAAGGTTGTCTCATCATGGTAGATATACATTTTGCTACCATTGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30881743 99 + 171630274 ACATAGTGGAAGCTTTCTTGGTAATGATTGACTGCCTAGATTTATAAATTTTCTAAAAAGTTGTCTCGTCATGATAGATACACGTTTTACAACCATTAT
i calJac3.chr4             C 0 I 582
s saiBol1.JH378327            45001 99 -    750284 ACATAGTGGAAGCTTTCTTGGTAATGATTGACTGCCTAGATTTATAAATTTACTGAAAAGGTGTCTCGTCATGGTAGATATATGTTTTGCAACCATTAT
i saiBol1.JH378327         C 0 I 583
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           664101 1986 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I

a score=124202.000000
s hg38.chr6_GL000254v2_alt  1848206 15 +   4827813 AACCATTAATGTAGA
s panTro5.chr6             30693839 15 + 175400573 AACCATTAATGTAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31117279 15 + 173848474 AACCATTAATGTAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     624439 15 +   2037526 AACCATTAATGTAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75299650 15 + 122973662 AACCATTAATGTAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31217426 15 + 172585720 AACCATTAATGTAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30506435 15 - 170955103 AACCATTAATGTAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     793196 15 +   1495729 AACCATTAATGTAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      24820 15 -    811324 AACCATTAATGTAGA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30063614 15 -  71996105 AACCATTAATGTAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      57786 15 +    779361 AACCATTAATGTAGA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     715091 15 -   1829203 AACCATTAATGTAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30882424 15 + 171630274 AACCATTAATGTAGA
i calJac3.chr4             I 582 C 0
s saiBol1.JH378327            45683 15 -    750284 AACCATTAACATAGA
i saiBol1.JH378327         I 583 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           664101 1986 +  18854210 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I

a score=283339.000000
s hg38.chr6_GL000254v2_alt  1848221 33 +   4827813 CTGCAATGATATGCACT---ATTTACAACCTTTTTT
s panTro5.chr6             30693854 33 + 175400573 CTGCAATGATATGCACT---ATTTACAACCTTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31117294 33 + 173848474 CTGCAATGATATGCACT---ATTTACAACCTTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     624454 33 +   2037526 CTGCAATGATATGCACT---ATTTACAACCTTTTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75299665 33 + 122973662 CTGCAATGATATGCACT---ATTTACAACCTTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31217441 33 + 172585720 CTGCAATGATATGCACT---ATTTACAACCTTTTTT
i rheMac8.chr4             C 0 I 323
s macFas5.chr4             30506450 33 - 170955103 CTGCAATGATATGCACT---ATTTACAACCTTTTTT
i macFas5.chr4             C 0 I 323
s macNem1.NW_012012100v1     793211 33 +   1495729 CTGCAATGATATGCACT---ATTTACAACCTTTTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      24835 33 -    811324 CTGCAATGATATGCACT---ATTTACAACCTTTTTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30063629 33 -  71996105 CTGCAATGATATGCACT---ATTTACAACCTTTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      57801 33 +    779361 CTGCAATGATATGCACT---ATTTACAACCTTTTTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     715106 33 -   1829203 CTGCAATGATATGCACT---ATTTACAACCTTTTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30882439 36 + 171630274 CTGCAATGATATGTACTATCATTTACAACGTTTTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            45698 33 -    750284 CTGCAATGATATGCAGT---ATTTACAACCTTTTTT
i saiBol1.JH378327         C 0 C 0
s otoGar3.GL873550           666087 29 +  18854210 CTGCAATGA----CAAT---CTCTATAATCTTTTTA
i otoGar3.GL873550         I 1986 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I

a score=70901.000000
s hg38.chr6_GL000254v2_alt  1848254 11 +   4827813 -AAGACTCTATT
s panTro5.chr6             30693887 11 + 175400573 -AAGACTCTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31117327 11 + 173848474 -AAGACTCTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     624487 11 +   2037526 -AAGACTCTATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75299698 11 + 122973662 -AAGACTCTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31217797 11 + 172585720 -aaGACTCTATT
i rheMac8.chr4             I 323 C 0
s macFas5.chr4             30506806 11 - 170955103 -aaGACTCTATT
i macFas5.chr4             I 323 C 0
s macNem1.NW_012012100v1     793244 11 +   1495729 -AAGACTCTATT
i macNem1.NW_012012100v1   C 0 I 5351
s cerAty1.NW_012002513v1      24868 11 -    811324 -AAGACTCTATT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30063662 11 -  71996105 -AAGACTCTATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      57834 11 +    779361 -AAGACTCTATT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     715139 11 -   1829203 -AAGACTCTATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30882475  5 + 171630274 -AAGAC------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            45731  4 -    750284 -AAGA-------
i saiBol1.JH378327         C 0 C 0
s otoGar3.GL873550           666116 12 +  18854210 AAAGCCTCTGTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I

a score=631954.000000
s hg38.chr6_GL000254v2_alt  1848265 101 +   4827813 TAGCA-GTAGA-----CTAATTACACAGTAGGTAATATTAGCATTCTAATGGTACTTTTTCAATGTTTTGTTCTTTTTATGAT-----ACAAAGTATTTCAGGGGATTTATT
s panTro5.chr6             30693898 101 + 175400573 TAGCA-GTAGA-----CTAATTACACAGTAGGTAATATTAGCATTCTAATGGTACTTTTTCAATGTTTTGTTCTTTTTATGAT-----ACAAAGTATTTCAGGGGATTTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31117338 101 + 173848474 TAGCA-GTAGA-----CTAATTACACAGTAGGTAATATTAGCATTCTAATGGTACTTTTTCAATGTTTTGTTCTTTTTATGAT-----ACAAAGTATTTCAGGGGATTTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     624498 101 +   2037526 TAGCA-GTAGA-----CTAATTACACAGTAGGTAATATTAGCATTCTAATGGTACTTTTTCCATGTTTTGTTCTTTTTATGAT-----ACAAAGTATTTCAGGGGATTTATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75299709 106 + 122973662 TAGCA-GTAGACTACTCTAATTACACAGTAGATAATATTAGCATTCTAATGGTACTTTTTCAATGTTTTGTTCTTTTTATGAT-----AAAAAGTATTTCAGGGGATTTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31217808 105 + 172585720 GAGCA-GTAGACTACTCTAATTACACAGTAGGTAATATTAGCATTCTAATGGCACTTTTTCAATGTTTTGTTCTTTTTATGAT-----AAAAAGTACTTCA-GGGATTTATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30506817 105 - 170955103 GAGCA-GTAGACTACTCTAATTACACAGTAGGTAATATTAGCATTCTAATGGCACTTTTTCAATGTTTTCTTCTTTTTATGAT-----AAAAAGTATTTCA-GGGATTTATT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      24879 105 -    811324 GAGCA-GTAGACTACTCTAATTACACAGTAGGTAATATTAGCATTCTAATGGCACTTTTTCAATGTTTTGTTCTTTTTATGAT-----AAAAAGTACTTCA-GGGATTTATT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30063673 104 -  71996105 GAGCA-GTAGA-TACTCTAATTACACAGTAGGTAATATTAGCATTCTAATGGCACTTTTTCAATGTTTTGTTCTTTTTATGAT-----AAAAAGTATTTCA-GGGATTTATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      57845 105 +    779361 GAGCA-GTAGACTACTCTAATTACACAGTAGGTAATATTAGCATTCTAATGGCACTTTTTCAATGTTTTGTTCTTTTTATGAT-----AAAAAGTACTTCA-GGGATTTATT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     715150 105 -   1829203 GAGCA-GCAGACTACTGTAATTACACAGTAGGTAATATGAGCATTCTAATGGCACTTTTTCAATGTTTTGTTCTTTTTATGAT-----AAAAAGTATTTCA-GGGATTTATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30882480  95 + 171630274 ------------TACTCTAATTACACGATAGATAGTATTAGCATTCTAATGGCACTTTTTCAATGTTTTGTTCCTTTTATGAT-----AAAAAATATTTCAGGGGATTTATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            45735  85 -    750284 ----------------CTAATGAAGCGATAGATAGT------ATTCTAATGGCACTTTTTCAACGTTTTGTTCGTTTTATGAT-----AAAAAATATTTCAGGGGATTTATT
i saiBol1.JH378327         C 0 C 0
s otoGar3.GL873550           666128 103 +  18854210 TAGCATGAAAAATACTCTAATTATATAGTAGATAGTATT---ATTCTGATAGCACTTTTG-AATGTTTTCTTCATTTTATGATAAAACAAAAATTATTTCA--GGTTTT---
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I
e macNem1.NW_012012100v1     793255 5351 +   1495729 I

a score=450694.000000
s hg38.chr6_GL000254v2_alt  1848366 52 +   4827813 ATTTCAAAGACTTCATTATGTGAAGCTCATTCATAATATTCTTCAAATTCTT
s panTro5.chr6             30693999 52 + 175400573 ATTTCAAAGACTTCATTATGTGAAGCTCATTCATAATATTCTTCAAATTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31117439 52 + 173848474 ATTTCAAAGACTTCATTATGTGAAGCTCATTCATAATATTCTTCAAATTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     624599 52 +   2037526 ATTTCAAAGACTTCATTATGTGAAGCTGATTCATAATATTCTTCAGATTCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75299815 52 + 122973662 ATTTCAGAGACTTCATTATGTGAAGCTCATTCATAATGTTCTTCAAATTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31217913 52 + 172585720 ATTTCAAAGACTTCATTATGTGAAGCTCATTCATAATGTTCTTCAAATTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30506922 52 - 170955103 ATTTCAAAGACTTCATTATGTGAAGCTCATTCATAATGTTCTTCAAATTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     798606 52 +   1495729 ATTTCAAAGACTTCATTATGTGAAGCTCATTCATAATGTTCTTCAAATTCTT
i macNem1.NW_012012100v1   I 5351 C 0
s cerAty1.NW_012002513v1      24984 52 -    811324 ATTTCAAAGACTTCATTATGTGAAGCTCATTCATAATGTTCTTCAAATTCTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30063777 52 -  71996105 ATTTCAAAGACTTCATTATGTGAAGCTCATTCATAATGTTCTTCAAATTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      57950 52 +    779361 ATTTCAAAGACTTCATTATGTGAAGCTCATTCATAATGTTCTTCAAATTCTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     715255 52 -   1829203 ATTTCAAAGACTTCATTATGTGAAGCTCATTCATCATGTTCTTCAAATTCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30882575 51 + 171630274 ATTTCAAAGACTTCATTATGTGAAGCTCATTCATAACACTGTTC-AATTCTT
i calJac3.chr4             C 0 I 4
s saiBol1.JH378327            45820 52 -    750284 ATTTCAAAGACTTCATTATGTGAAGCTCATTCATAACATTCTTCAAATTCTT
i saiBol1.JH378327         C 0 I 4
s otoGar3.GL873550           666231 49 +  18854210 ATTTCAAAAATTTTATTGTGTGAAGCTCATTCTTAA---TCTTTAAATTCgg
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e cebCap1.NW_016107755v1    1292930 675 -   1771730 I

a score=25516.000000
s hg38.chr6_GL000254v2_alt  1848418 5 +   4827813 C----TTAT
s panTro5.chr6             30694051 5 + 175400573 C----TTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31117491 5 + 173848474 C----TTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     624651 5 +   2037526 C----TTAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75299867 9 + 122973662 CTTGATTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31217965 9 + 172585720 CTTGATTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30506974 9 - 170955103 CTTGATTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     798658 9 +   1495729 CTTGATTAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      25036 9 -    811324 CTTGATTAT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30063829 9 -  71996105 CTTGATTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      58002 9 +    779361 CTTGATTAT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     715307 9 -   1829203 CTTGATTAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30882630 5 + 171630274 ----ATTAT
i calJac3.chr4             I 4 C 0
s saiBol1.JH378327            45876 5 -    750284 ----ATTGT
i saiBol1.JH378327         I 4 C 0
s cebCap1.NW_016107755v1    1293605 5 -   1771730 ----CTTAT
i cebCap1.NW_016107755v1   I 675 C 0
s otoGar3.GL873550           666280 5 +  18854210 ----ctcag
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I

a score=1256442.000000
s hg38.chr6_GL000254v2_alt  1848423 145 +   4827813 TACTAGTTTTTCCCTGAATTCTGAGCACCGACAATATGC-TAGAACATTCACCTTTTCACACATCCACAAGATGTGTGCTTTGCATATCGTTTTCATTTAATATTTACATTTCAAGCAATAATCAGCTACCTGTGAGTTTTGTCAA
s panTro5.chr6             30694056 135 + 175400573 TACTAGTTTTTCCCTGAATTCTGAGCACCGACAA-----------CATTCACCTTTTCACACATCCACAAGATGTGTGCTTTGCATATCGTTTTCATTTAATATTTACATTTCAAGCAATAATCAGCTACCTGTGAGTTTTGTCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31117496 145 + 173848474 TACTAGTTTTTCCCTGAATTCTGAGCACCGACAATATGC-TAGAACATTCACCTTTTCACACATCCACAAGATGTGTGCTTTGCATATCGTTTTCATTTAATATTTACATTTCAAGCAATAATCAGCTACCTGTGAGTTTTGTCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     624656 145 +   2037526 TACTAGTTTTTCCCTGAATTCTGAGCACCGACAATATGC-TAGAACATTCACCTTTTCACACATCCACAAGATGTGTGCTTTGCATATCGTTTTCATTTAATATTTACATTTCAAGCAATAATCAGCTACCTGTGAGTTTTGTCAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75299876 144 + 122973662 TACTAGTTTTTCCCTGAATTCTGAGCACCGACAATATGC-TAGAACATTCACCTTTTCAC-CATCCACAAGATGTGTGTtttgcatatcattttcatttaatatttacatttCAAGCAATAATCAGCTACTTGTGAGTTTTGTCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31217974 145 + 172585720 TACTAGTTTTTCACTGAATTCTGAGCACCGACAATATGC-TAGAACATTCACCTTTTCACACATCCACAAGATGTGTGCTTTGCAAATCATTTTCATTTAATATTTACATTTCAAGCAATAATCAGTTACCTGTGAGTTTTGTCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30506983 145 - 170955103 TACTAGTTTTTCACTGAATTCTGAGCACCGACAATATGC-TAGAACATTCACCTTTTCACACATCCACAAGATGTGTGCTTTGCAAATCATTTTCATTTAATATTTACATTTCAAGCAATAATCAGTTACCTGTGAGTTTTGTCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     798667 145 +   1495729 TACTAGTTTTTCACTGAATTCTGAGCACTGACAATATGC-TAGAACATTCACCTTTTCACACATCCACAAGATGTGTGCTTTGCAAATCATTTTCATTTAATATTTACATTTCAAGCAATAATCAGTTACCTGTGAGTTTTGTCAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      25045 145 -    811324 TACTAGTTTTTCACTGAATTCTGAGCACCGACAATATGC-TAGAACATTCACCTTTTCACACATCCACAAGATGTGTGCTTTGCAAATCATTTTCATTTAATATTTACATTTCAAGCAATAATCAGTTACCTGTGAGTTTTGTCAA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30063838 145 -  71996105 TACTAGTTTTTCACTGAATTCTGAGCACCGACAATATGC-TAGAACATTCACCTTTTCACACATCCACAAGATGTGTGCTTTGCAAATCATTTTCATTTAATATTTACATTTCAGGCAATAATCCGCTACCTGTGAGTTTTGTCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      58011 145 +    779361 TACTAGTTTTTCACTGAATTCTGAGCACCGACAATATGC-TAGAACATTCACCTTTTCACACATCCACAAGATGTGTGCTTTGCAAATCATTTTCATTTAATATTTACATTTCAAGCAATAATCAGTTACCTGTGAGTTTTGTCAA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     715316 145 -   1829203 TACTAGTTTTTCACTGAATTCTGAGCATCGACAATATGC-TACAACATTCACCTTTTCACACATCCACAAGATGTGTGCTTTGCAAATCATTTTCATTTAATATTTACATTTCAAGCAATAATCAGTTACCTGTGAATTTTGTCAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30882635 146 + 171630274 TGCTAGTTTTTTATTGAATTCTGAGCACTAACAATATGCTTAGAACATTCAGCCTTTCACACATTCATAAGATGTGTGCTTTGTATATCATTTTCATTCAATATTTACATTGCAAGCAATAATCAGCTACCTGTGAGTTTTGTCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            45881 146 -    750284 TACTAGATTTTTATTGGATTCTGAGCACCGGCAATATGCTTAGAACATTCAGCTTTCCACACATTCATAAGATGTGTGCTTTGTATATCATTTTCATTCAATATTTACATTGCAAGCAATAATCAGTTACTTGTGAGATTTGTCAA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1293610 146 -   1771730 TACTAGTTTGTTATTGAACTCTGAGCACTGACAATATGCTTAGAACATTCAGCTTTCCACACATTCATAAGATGTGTGCTTTGTATATCATTTTCATTCAGTATTTACATTGCAAGCAATAATCAGTTCCCTGTGAGTTTTGTCAA
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           666285   0 +  18854210 C

a score=1839332.000000
s hg38.chr6_GL000254v2_alt  1848568 315 +   4827813 AATTATCAGGGG----ttt---------tttgtttgtttgttttttgacatggagttttgctcttgttgcccaggctggagtgcaatggcgccatctcagctcactgcaacctccacctcctgggttcaaatgattatcctgcctcagcctccccagtagctaggattacaggcatgcaccaccacacctggctaattttatatttttagtagagacagggtttctccatgttggtcaggctggtctcgaactcccaacctcaggtgattcactcaccttgagctcccaaagtgctgggattacaggcatgagccaatacacctggcc
s panTro5.chr6             30694191 315 + 175400573 AATTATCAGAGG----ttt---------tttgtttgtttgttttttgacatggagttttgctcttgttgcccaggctggagcgcaatggcgccatctcagctcactgcaacctccacctcctgggttcaaatgattctcctgcctcagcctccccagtagctaggattacaggcatgcaccaccacgcctggctaattttgtatttttagtagagacagggtttctccatgttggtcaggctggtctcgaactcccgacctcaggtgattcactcaccttgagctcccgaggtgctgggattacaggcatgagccactacacctggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31117641 315 + 173848474 AATTATCAGAGG----ttt---------tttgtttgtttgttttttgacatggagttttgctcttgttgcccaggctggagcgcaatggcgccatctcagctcactgcaacctccacctcctgggttcaaatgattctcctgcctcagcctccccagtagctaggattacaggcatgcaccaccacgcctggctaattttgtatttttagtagagacagggtttctccatgttggtcaggctggtctcgaactcccgacctcaggtgattcactcaccttgagctcccgaggtgctgggattacaggcatgagccactacacctggcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     624801 315 +   2037526 AATTATCCGAGG----ttt---------tttgtttgtttgttttttgacatggagttttgctcttgttgcccaggctggagtgcaatggcgccatctcagctcactgcaacctccacctcctgggttcaaatgattctcctgcctcagcctccccagtagctaggattacaggcatgcaccaccacgcctggctaattttgtatttttagtagagacagggtttctccatgttggtcaggctggtctcgaactcccgacctcaggtgattcactcaccttgagctcccaaagtgctgggattacaggcatgagccactacacctggcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75300020 315 + 122973662 AATTATCAGGGG----ttt---------tttgtttgtttgttttttgacatggagttttgctcttgttgcccaggctggagtgcaatggcgccatctcagctcactgcaacctccacctcctgggttaaaatgattctcctgcctcagcctccccagtagctaggattacaggcatgcaccaccacacctggctaattttatatttttagtagagacagggtttctccatgttggtcaggctggtctcgaactcccgacctcaggtgattcacccaccttgagctcccaaagtgccaggattacaggtgtgagccactacacctggcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31218119 324 + 172585720 AATTATCAGGGT----tttgtttgtttgtttgtttgtttgttttttgACatggagttttgctctcattgcccaggctggagtacaatggtgccatctcagctcactgcaacctctgcctcctgggttcaaatgattctcctgcctcagcctccccagtagctaggattacaggcgtgcaccaccacgcctggctaattttgtatttttagtagagacagagtttctccacgttggtcagtctggtctcgaactcccgacctcaggtgatccacccaccttgacctcccaaagtgctgggattacaggtgtgagccactacacctggcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30507128 324 - 170955103 AATTATCAGGGT----tttgtttgtttgtttgtttgtttgttttttgACatggagttttgctctcattgcccaggctggagtacaatggtgccatctcagctcactgcaacctctgcctcctgggttcaaatgattctcctgcctcagcctccccagtagctaggattacaggcgtgcaccaccacgcctggctaattttgtatttttagtagagacagagtttctccatgttggtcagtctggtctcgaactcccgacctcaggtgatccacccaccttgacctcccaaagtgctgggattacaggtgtgagccactacacctggcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     798812 328 +   1495729 AATTATCAGGGTtttgtttgtttgtttgtttgtttgtttgttttttgACatggagttttgctctcattgcccaggctggagtacaatggtgccatctcagctcactgcaacctctgcctcctgggttcaaatgattctcctgcctcagcctccccagtagctaggattacaggcgtgcaccaccacgcctggctaattttgtatttttagtagagacagagtttctccatgttggtcagtctggtctcgaactcccgacctcaggtgatccacccaccttgacctcccaaagtgctgggattacaggtgtgagccactacacctggcc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      25190 328 -    811324 AATTATCAGGGTtttgtttgtttgtttgtttgtttgtttgttttttgACatggagttttgctctcattgcccaggctggagtgcaatggtgccatctcagctcactgcaacctctgcctcctgggttcaaatgattctcctgcctcagcctccccagtagctaggattacaggcatacaccaccacgcctggctaattttgtatttttagtagagacagagtttctccatgttggtcagtctggtctcgaactcccgacctcaggtgatccacccaccttgacctcccaaagtgctgggattacaggtgtgagccactacacctggcc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30063983 324 -  71996105 AATTATCAGGGg----tttgtttgtttgtttgtttgtttgttttttgACatggagttttgctctcgttgcccaggctggagtgcaatggtgccatctcagctcactgcaacctctgcctcctgggttcaaatgattctcctgcctcagcctccccagtagctaagattacaggcatgcaccaccacgcctggctaattttatatttttagtagagacagagtttctccatgttggtcagtctggtctcgaactcccgacctcaggtgatccacccaccttgacctcccaaagtgctgggattacaggtgtgagccactacacctggcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      58156 324 +    779361 AATTATCAGGGT----tttgtttgtttgtttgtttgtttgttttttgACatggagttttgctctcattgcccaggctggagtgcaatggtgccatctcagctcactgcaacctctgcctcctgggttcaaatgattctcctgcctcagcctccccagtagctcggattacaggcatacaccaccacgcctggctaattttgtatttttagtagagacagagtttctccatgttggtcagtctggtctcgaactcccgacctcaggtgatccacccaccttgacctcccaaagtgctgggattacaggtgtgagccactacacctggcc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     715461 319 -   1829203 AATCATCAGGGt----tttttttg-----ttgtttgtttgtttgttgacatgaagttttgctctcgttgcccaggctggagtgcaatggcgccatctcagcccactgcaacctctgcctcctgggttcaaatgattctcctgcctcagcctccccagtagctaggattacaggcatgcaccaccacgcctggctaattttatatttttagtagagatagagtttctccatgttggtcagtctggtctcgaactcccgacctcaggtgatccactcaccttgacctctcaaagtgctgggattacaggtgtgagccactacacctggcc
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            46027   0 -    750284 C
e otoGar3.GL873550           666285   0 +  18854210 C
e cebCap1.NW_016107755v1    1293756   0 -   1771730 C
e calJac3.chr4             30882781   0 + 171630274 C

a score=2068071.000000
s hg38.chr6_GL000254v2_alt  1848883 238 +   4827813 AATTATCAGGTTTTTAATTAAATTTTAGAAATGTGAATTATTGTTTCCTTTGAACTGAATCTTATGCAATACTGAAAGCATTCCCACCTGCCATAATCTTTGCATATCAGTTGTTCCAGGCTGTGATTCAATATTAATACCATTGGTTTCATGATTTGTCTCAGATTCAGAAGAGTCATGTTTACAGTATCTAAAAGCAATGTTTAAAATGTATGTAggcctggcactgtggcttatg
s panTro5.chr6             30694506 238 + 175400573 AATTATCAGGTTTTTAATTAAATTTTAGAAATGTGAATTACTGTTTCCTTTGAACTGAATCTTATGCAATACTGAAAGCATTCCCACCTGCCATAATTTTTGCATATCAGTTGTTCCAGGCTGTGATTCAATATTAATACCATTGGTTTCATGATTTGTCTCAGATTCAGAAGAGTCATGTTTACAGTATCTAAAAGCAGTGTTTAAAATGTATGTAggcctggcgctgtggcttatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31117956 238 + 173848474 AATTATCAGGTTTTTAATTAAATTTTAGAAATGTGAATTACTGTTTCCTTTGAACTGAATCTTATGCAATACTGAAAGCATTCCCACCTGCCATAATTTTTGCATATCAGTTGTTCCAGGCTGTGATTCAATATTAATACCATTGGTTTCATGATTTGTCTCAGATTCAGAAGAGTCATGTTTACAGTATCTAAAAGCAGTGTTTAAAATGTATGTAggcctggcgctgtggcttatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     625116 238 +   2037526 AATTATCAGGTTTTTAATTAAATTTTAGAAATGTGAATTATTGTTTCCTTTGAACTGAATCTTATGCAATACTGAAAGCATTCCCACCTGCCATAATTTTTGCATATCAGTTGTTCCAGGCTGTGATTCAATATTAATACCATTGGTTTCATGATTTGTCTCAGATTCAGAAGAGTCATGTTTACAGTATCTAAAAGCAGTGTTTAAAATGTATGTAggcctggcgctgtggcttatg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75300335 238 + 122973662 AATTATCAGATTTTAAATTAAATTTTAGAAATGTGAATTATTGTTTCCTTTGAACTGAATCTTATGCAATACTGAAAGCATTCCCACCTGCCATAATTTTTGCATATCAGTTGTTCCAGGCTGTGATTCAATATTAATATCATTGGTTTCATGATTTGTCTCAGATTCAGAAGAGTCATGTTTATAGTATCTAAAAGCAGTGTTTAAAATGTATGTAggcctggcgctgtggcttatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31218443 238 + 172585720 AATTATCAAGTTTTTAATTAAATTTTAGAAATGTGAATTATTGTTTCCTTTGAACTGAATCTTACACAATACTGAAAGCATTCCCACCTGCCATAATTTTTGCGTATCAGTTGTTCCAGGCTGTGATTCAATATTAATATCATTAGTTTCATGATCTGTCTCGGATTAAGAAGAGTCATGTTTATAGTATCTAAAAGCAGGGCTTAAAATGTATGTAggcctggtactgtggctcatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30507452 238 - 170955103 AATTATCAAGTTTTTAATTAAATTTTAGAAATGTGAATTATTGTTTCCTTTGAACTGTATCTTACACAATACTGAAAGCATTCCCACCTGCCATAATTTTTGCGTATCAGTTGTTCCAGGCTGTGATTCAATATTAATATCATTAGTTTCATGATCTGTCTCGGATTAAGAAGAGTCATGTTTATAGTATCTAAAAGCAGGGCTTAAAATGTATGTAggcctggtactgtggctcatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     799140 238 +   1495729 AATTATCAAGTTTTTAATTAAATTTTAGAAATGTGAATTATTGTTTCCTTTGAACTGAATCTTACACAATACTGAAAGCATTCCCACCTGCCATAATTTTTGCGTATCAGTTGTTCCAGGCTGTGATTCAATATTAATATCATTAGTTTCATGATCTGTCTCGGATTAAGAAGAGTCATGTTTATAGTATCTAAAAGCAGGGCTTAAAATGTATGTAggcctggtactgtggctcatg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      25518 238 -    811324 AATTATCAGGTTTTTAATTAAATTTTAGAAATGTGAATTATTGTTTCCTTTGAACTGAATCTTACACAATACTGAAAGCATTCCCACCTGCCATAATTTTTGCGTATCAGTTGTTCCAGGCTGTGATTCAATATTAATATCATTAGTTTCATGATCTGTCTCGGATTAAGAAGAGTCATGTTTATAGTATCTAAAAGCAGGGCTTAAAATGTATGTAggcctggtactgtggctcatg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30064307 238 -  71996105 AATTATCAGGTTTTTAATTAAATTTTAGAAATGTGAATTATTGTTTCCTTTGAACTGAATCTTACACAATACTGAAAGCATTCCCACCTGCCATAATTTTTGCGTATCAGTTGTTCCAGGATGTGATTCAATATTAATATCATTGGTTTCATGATCTGTCTCAGATTAAGAAGAGTCATGTTTATAGTATCTAAAAGCAGGGCTTAAAGCGTATGTAggcctggtactgtggctcatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      58480 238 +    779361 AATTATCAGGTTTTTAATTAAATTTTAGAAATGTGAATTATTGTTTCCTTTGAACTGAATCTTACACAATACTGAAAGCATTCCCACCTGCCATAATTTTTGCGTATCAGTTGTTCCAGGCTGTGATTCAATATTAATATCATTAGTTTCATGATCTGTCTCGGATTAAGAAGAGTCATGTTTATAGTATCTAAAAGCAGGGCTTAAAATGTATGTAggcctggtactgtggctcatg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     715780 238 -   1829203 AATTATCAGGTTTTTAATTAAATTTTAGAAATGTGAATTATTGTTTCCTTTGAACTGAATCTTACACAATACTGAAAGCATTCCCACCTGCCATAATTTTTGCATATCAGTTGTTCCAGGCTGTGATTCAATATTAATATCATTGGTTTCATGATCTGTCTCAGATTAAGAAGAGTCATGTTTATAGTATCTAAAAGCAGGGTTTAAAATGTATGTAggcctggtactgtggctcatg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30882781 238 + 171630274 AATTATCCGGTTTCTAATTAAATTTTATAAATGTGAATTATTGTTTCCTTTGAACTGAATCTTATGCAATATTGGAAGCATTCCCACCTGTTATAATTGTTATATATCAGTTGTTCCAGGCTGTGATTCAACATTAACATCATTAGTTTCATGATCTTGCTCAGATTCAGAAGAGTAATGTTTGTAGTATCTAAAAGTAATGTTTAAAATGTATAGAggcctggtgcggtggctcatg
i calJac3.chr4             C 0 I 915
s saiBol1.JH378327            46027 238 -    750284 AATTCTCTGGTTTCTAATTAAATTTTATAAATGTGAATTACTGTCTCCTTTGAACTGAATATTATGCATTATTGGAAGCATTCCCACCTGTTATAATTTTTATATATCAGTTGTTCCAGGCTGTGATTCGACATTAACATCCCTGGTTTTGTGTTCTTGCTCCGATTCAGAAGAGTCATGTTTGTAGTATCTGAAAGCAATGTTTAAAATGTATAAAggcctggtgcggttgctcatg
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1293756 238 -   1771730 AATTATCTGGTTTCTAATTAAATTTTATAAATGTGAATTATTGTTTCCTTTGAACTGAATCTTATGCAATATTGGAAGCATTCCCACCTATTATAATTTTTATATATTAGTTGTTCCAGGCTGTGATTCAACATTAACATCATTGGTTTCGTGATCTTGCTCTGATTCAGAAGACTCATGTTTGTACTATCTAAAAGCAATGTTTAAAATGTATAGAggcctggtgcggtggctcatg
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           666285   0 +  18854210 C

a score=10500.000000
s hg38.chr6_GL000254v2_alt  1849121 1 +   4827813 c
s panTro5.chr6             30694744 1 + 175400573 c
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31118194 1 + 173848474 c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     625354 1 +   2037526 c
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75300573 1 + 122973662 c
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31218681 1 + 172585720 c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30507690 1 - 170955103 c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     799378 1 +   1495729 c
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      25756 1 -    811324 c
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30064545 1 -  71996105 c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      58718 1 +    779361 c
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     716018 1 -   1829203 c
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30883934 1 + 171630274 c
i calJac3.chr4             I 915 C 0
s saiBol1.JH378327            46265 1 -    750284 c
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1293994 1 -   1771730 c
i cebCap1.NW_016107755v1   C 0 I 648
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           666285 0 +  18854210 C

a score=30555.000000
s hg38.chr6_GL000254v2_alt  1849122 3 +   4827813 ctg
s panTro5.chr6             30694745 3 + 175400573 ctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31118195 3 + 173848474 ctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     625355 3 +   2037526 ctg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75300574 3 + 122973662 ctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31218682 3 + 172585720 ctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30507691 3 - 170955103 ctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     799379 3 +   1495729 ctg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      25757 3 -    811324 ctg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30064546 3 -  71996105 ctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      58719 3 +    779361 ctg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     716019 3 -   1829203 ctg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30883935 3 + 171630274 ctg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            46266 3 -    750284 ctg
i saiBol1.JH378327         C 0 I 649
s cebCap1.NW_016107755v1    1294643 3 -   1771730 ctg
i cebCap1.NW_016107755v1   I 648 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           666285 0 +  18854210 C

a score=1079598.000000
s hg38.chr6_GL000254v2_alt  1849125 129 +   4827813 taatcccagcactttgggaggctgaagctgatggatcacctgaggtcaggagtttgaaaccagcttggccaacatgacgaaaccccatctctactaaaaatacaaaaatcggctgggcgcggtggctca
s panTro5.chr6             30694748 129 + 175400573 taatcccagcactttgggaggctgaagctgatggatcacctgaggtcaggagtttgaaaccagcttggccaacatgacgaaaccccatctctactaaaaatacaaaaatcagctgggcgcggtggctca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31118198 129 + 173848474 taatcccagcactttgggaggctgaagctgatggatcacctgaggtcaggagtttgaaaccagcttggccaacatggtgaaaccctgtctctactaaaaatacaaaaatcagctgggcgcggtagatca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     625358 129 +   2037526 taatcccagcacttcaggaggctgaagctgatggatcacctgaggtcaggagtttgaaaccagcttggccaacatgacgaaaccccatctctactaaaaatacaaaaatcagctgggcgcggtggctca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75300577 129 + 122973662 taatcacagcacttcgggaggctgaagctgatggatcacctgaggtcaggagtttgaaaccagcttggccaacatgacgaaactccatctctactaaaaatacaaaaatcggctgggcgcggtggctca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31218685 129 + 172585720 taatcccagcactttgggaggccaaagctgatggatcacctgaggtcaggagtttgaaaccagcctggccaacatgacgaaaccccagctctactaaaaacacaaaaattggctggctgcggtggctaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30507694 129 - 170955103 taatcccagcactttgggaggccaaagctgatggatcacctgaggtcaggagtttgaaaccagcctggccaacatgacgaaaccccagctctactaaaaacacaaaaattggctggctgcggtggctaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     799382 129 +   1495729 taatcccagcactttgggaggccaaagctgatggatcacctgaggtcaggagtttgaaaccagcctggccaacatgacgaaaccccagctctactaaaaacacaaaaattggctggctgcggtggctaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      25760 104 -    811324 taatcccagcactttgggaggccaaagctgatggatcacctgaggtcaggagtttgaaaccagcctgg-------------------------ctaaaaacacaaaaattggctggctgcggtggctaa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30064549 129 -  71996105 taatctcagcactttgggaggccaaagctgatggatcacctgaggtcaggagtttgaaaccagcctagccaacatgatgaaaccccagctctactaaaaatacaaaaattggctgggtgcggtggctaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      58722 129 +    779361 taatcccagcactttgggaggccaaagctgatggatcacctgaggtcaggagtttgaaaccagcctggccaacatgacgaaaccccagctctactaaaaacacaaaaattggctggctgcggtggctaa
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     716022 129 -   1829203 taatcccagcactttgggaggccaaagctgatggatcacctgaggtcaggagtttgaaaccagcctggccaacatgacgaaaccccagctctactaaaaatacaaaaattggctgggtgcagtggctaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30883938 129 + 171630274 taatcccagcgctttgggaggccaaggcggatggatcacctgaggtcaggagtttaacaccagcctggccaacatgacaaaacccagtctctactaaaaacacaaaaattggctgggcacagtggctca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            46918 129 -    750284 taatcccagcactttgggaggccaaggtggatggatcacctgaggtcaggagtttaagaccagcctagccaacatgacaaaactcggtctctactaaaaacacaaaaattggctaggcacagtggctca
i saiBol1.JH378327         I 649 C 0
s cebCap1.NW_016107755v1    1294646 129 -   1771730 taatcccagcactttgggaggccaacgcagatggatcacctgaggtcaggagtttaagaccagcctggtcaacatgacaaaacccggtctctactaaaaacacaaaaattggctgcgcacggtggctca
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           666285   0 +  18854210 C

a score=138871.000000
s hg38.chr6_GL000254v2_alt  1849254 16 +   4827813 tgcctgtaatcccagc
s panTro5.chr6             30694877 16 + 175400573 tgcctgtaatcccagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31118327 16 + 173848474 tgtcagtaattccagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     625487 16 +   2037526 tgcctgtaatcccagc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75300706 16 + 122973662 tgcctgtaatcccagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31218814 16 + 172585720 tgcctataatcccagc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30507823 16 - 170955103 tgcctataatcccagc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     799511 16 +   1495729 tgcctataatcccagc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      25864 16 -    811324 tgcctataatcccagc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30064678 16 -  71996105 tgcctataatcccagc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      58851 16 +    779361 tgcctataatcccagc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     716151 16 -   1829203 ggcctataatcccagc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30884067 16 + 171630274 catctgtaatcccagc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            47047 16 -    750284 catctgcaatcccagc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1294775 16 -   1771730 cacctgtaatcccagc
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           666285 16 +  18854210 tgcctgtggctcaagt
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I

a score=1007063.000000
s hg38.chr6_GL000254v2_alt  1849270 136 +   4827813 actttgggaggccaaggcaggtggct-----cacctgaagtcaggagttcaagaccagcctgaccaacatcgtgaaac-tccgtctccactaaaatacaaaaaattagccaggcatggtggtacatgcctgtagtcccagct
s panTro5.chr6             30694893 136 + 175400573 actttgggaggccaaggcaggtggct-----cacctgaagtcaggagttcaagaccagcctgaccaacatcgtgaaac-tccgtctccactaaaatacaaaaaactagccaggcgtggtggtacatgcctgtagtcccagct
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     625503 136 +   2037526 actttgggaggccaaggcaggtggct-----cacctgaagtcaggagttcaagaccagcctgaccaacatcgtgaaac-tccgtctccactaaaatacaaaaaattagccaggcatggtggtacatgcctgtagtcccagct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75300722 136 + 122973662 actttgggaggccaaggcagggggct-----cacctgacgtcaggagttcaagaccagcctaaccaatatcgtgaaac-tctgtctccactaaaatacaaaaaattagccaggcatggtggtgcatgcctgtagtcccagct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31218830 136 + 172585720 actttgggaggccgaggtaggtggct-----catctgaggtcaggagtttgagaccagcctgaccaacatggtgaaac-accatctctactaaaatacaaaaaattagccaggcatggtggtgcattcctgtaatcccagct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30507839 136 - 170955103 actttgggaggccgaggtaggtggct-----catctgaggtcaggagtttgagaccagcctgaccaacatggtgaaac-accatctctactaaaatacaaaaaattagccaggcatggtggtgcattcctgtaatcccagct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     799527 136 +   1495729 actttgggaggccgaggtaggtggct-----catctgaggtcaggagtttgagaccagcctgaccaacatggtgaaac-accatctctactaaaatacaaaaaattagccaggcatggtggtgcattcctgtaatcccagct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      25880 136 -    811324 actttgggaggccgaggtaggtggct-----catctgaggtcaggagtttgagaccagcctgaccaacatggtgaaac-accatctctactaaaatacaaaaaattagccaggcatggtggtgcattcctgtaatcccagct
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30064694 136 -  71996105 actttgggaggccgaggcaggtggct-----cacccgaggtcaggagtttgagaccagcctgactaacatggtgaaac-accatctctactaaaatacaaaaaatgagccaggcatggtggtgcattcctgtaatcccagct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      58867 136 +    779361 actttgggaggccgaggtaggtggct-----catctgaggtcaggagtttgagaccagcctgaccaacatggtgaaac-accatctctactaaaatacaaaaaattagccaggcatggtggtgcattcctgtaatcccagct
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     716167 136 -   1829203 actttgagaggccgaggcaggtggct-----cacctgaggtcaggggtttgagaccagcctgaccaacatggtgaaac-cccgtctctactaaaatacaaaaaattagccaggcatggtggtacattcctgtaatcccagct
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30884083 136 + 171630274 actttgggaggctgaggcaggtggac-----cacctgaggtcaggagttggagaccagcctgaccaacatggtgaaac-cccatctctactaaaatacaaacaattagccggacgtggtggtgcatccctgtagtcccagct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            47063 136 -    750284 actttgagaggccgaggcaggtggac-----cacctgaggtcaggaggttgagaccagcctgaccaacatggtggaac-cccatctctactaaaatacaaactattagctgggcatggtggtgcatccctgtagtcccagct
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1294791 114 -   1771730 actttgagaggccgaggcaggtgga----------------caggagtt-----------tgaccaacacggtgaaac-cccatctctactaaaatacaaacaattagccaggcatggtggtgtatccctgtagtcccagct
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           666301 126 +  18854210 ---------ggctaaggc-gccagccacatacacctaaggtggtgggttcaaatccagcctgggc----ccgccaaacaacaatgacggctgca--accaaaacatagctgggcgttgtggtgggcacctgttgtcccagct
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e panPan2.chr6             31118343   0 + 173848474 C

a score=22920.000000
s hg38.chr6_GL000254v2_alt  1849406 2 +   4827813 ac
s panTro5.chr6             30695029 2 + 175400573 ac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31118343 2 + 173848474 ac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     625639 2 +   2037526 ac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75300858 2 + 122973662 ac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31218966 2 + 172585720 ac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30507975 2 - 170955103 ac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     799663 2 +   1495729 ac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      26016 2 -    811324 ac
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30064830 2 -  71996105 ac
i chlSab2.chr17            C 0 N 0
s manLeu1.NW_012106264v1      59003 2 +    779361 ac
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     716303 2 -   1829203 ac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30884219 2 + 171630274 ac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            47199 2 -    750284 ac
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1294905 2 -   1771730 ac
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           666427 2 +  18854210 ac
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I

a score=848873.000000
s hg38.chr6_GL000254v2_alt  1849408 120 +   4827813 ttgggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgcagtgagctgagatttcgccattgcactccagcctgggcaacaaaagtgaaactctgtctcaaaaaaaaaa
s panTro5.chr6             30695031 120 + 175400573 ttgggaggctgaggcagaagaattgcttgaacccaggaggcagaggttgcagtgagctgagatttcgccattgcactccagcctgggcaacaaaagtgaaactctgtctcaaaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31118345 119 + 173848474 ttgggaggatgaggcaggagaatcgcttgaagccaggaggcggaggttgtagtgagccaagatccccccattgcactccagcctgggcaac-agagcaagactccgtctacaaaaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     625641 120 +   2037526 ttgggaggcggaggcaggagaattccttgaacccgggaggcagaggttgcagtgagctgagatttcaccattgcactccagcctgggcaacaaaagtgaaactctgtctcaaaaaaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75300860 120 + 122973662 ttgggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgcagtgagctgagatttcgccattggactccagcctgggcaacaaaagtgaaactccgtctcaaaaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31218968 120 + 172585720 tcgggaggctgaggaatgagaatcgcttgaacctgggagatggaggttgcaatgagctgagatcacaccactgcactccagcctgcgctacaggagcgagcctccatctcaaaaaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30507977 120 - 170955103 tcgggaggctgaggaatgagaatcgcttgaacctgggaggtggaggttgcaatgagctgagatcacaccactgcactccagcctgcgctacaggagcgagcctccatctcaaaaaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     799665 120 +   1495729 tcgggaggctgaggaatgagaatcgcttgaacctgggagatggaggttgcaatgagctgagatcacaccactgcactccagcctgcgctacaggagcgagcctccatctcaaaaacaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      26018 120 -    811324 tcgggaggctgaggaatgagaatcgcttgaacctgggaggtggaggttgcaatgagctgagatcacaccactgcactccagcctgcgctacaggagcgagcctccatctcaaaaaaaaaa
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1      59005 120 +    779361 tcgggaggctgaggaatgagaatcgcttgaacctgggaggtggaggttgcaatgagctgagatcacaccactgcactccagcctgcgctacaggagcgagcctccatctcaaaaaaaaaa
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     716305 120 -   1829203 tcggggggctgaggaatgagaattgcttgaacctgggaggtggaggttgcaatgagccgagatcacaccactgcactccagcctgcgctacaggagcgagcctccatctcaaaaaaaaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30884221 117 + 171630274 ttgggagcttgaagcaggagaattgcttgaacccaggaggcagaggttgcagtgacctgagatcacgccactgcactccagcctggacaacaggaccgaaactctgtctaaaaaaaa---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            47201 117 -    750284 ttgggaggctgaagcaggagaatcacttgaaccctggaggcagatgttgcagtgagctgagatcgtgccattgcactccagcctggacgataggacagaaactctgtcaaaaaaaaa---
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1294907 120 -   1771730 ttgggaggctgaagcaggagaatcgcttgaacccgggaggcagaggttgcagtgagctgagatcgtgccactgcactccagcctggacaacaggaccgaaactctgtctaaaaaaaaaaa
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           666429 116 +  18854210 ttgggaggctgaggcaggagactcgcttgagcccaggagttggaggttgctgtgagttgtgat---gccacaacactcgacccagagggaca-gcttgaggctctgtctcaaaacaaaca
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I

a score=7098.000000
s hg38.chr6_GL000254v2_alt  1849528 1 +   4827813 a
s panTro5.chr6             30695151 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31118464 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     625761 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75300980 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31219088 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30508097 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     799785 1 +   1495729 a
i macNem1.NW_012012100v1   C 0 N 0
s cerAty1.NW_012002513v1      26138 1 -    811324 a
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1      59125 1 +    779361 a
i manLeu1.NW_012106264v1   C 0 C 0
s saiBol1.JH378327            47318 1 -    750284 a
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1295027 1 -   1771730 a
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           666545 1 +  18854210 a
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e calJac3.chr4             30884338 0 + 171630274 C
e colAng1.NW_012115577v1     716425 0 -   1829203 C

a score=5447.000000
s hg38.chr6_GL000254v2_alt  1849529 3 +   4827813 aa-a
s panTro5.chr6             30695152 3 + 175400573 aa-g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31118465 3 + 173848474 aa-a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     625762 3 +   2037526 ac-g
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75300981 4 + 122973662 aaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31219089 3 + 172585720 aa-a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30508098 3 - 170955103 aa-a
i macFas5.chr4             C 0 N 0
s cerAty1.NW_012002513v1      26139 3 -    811324 aa-a
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1      59126 3 +    779361 aa-a
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30884338 1 + 171630274 ---a
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            47319 3 -    750284 ac-a
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1295028 3 -   1771730 aa-a
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           666546 3 +  18854210 ac-a
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     716425 0 -   1829203 C

a score=2997.000000
s hg38.chr6_GL000254v2_alt  1849532 1 +   4827813 a
s panTro5.chr6             30695155 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31118468 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     625765 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75300985 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31219092 1 + 172585720 a
i rheMac8.chr4             C 0 N 0
s calJac3.chr4             30884339 1 + 171630274 a
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            47322 1 -    750284 a
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1295031 1 -   1771730 a
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           666549 1 +  18854210 a
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     716425 0 -   1829203 C
e manLeu1.NW_012106264v1      59129 0 +    779361 C
e cerAty1.NW_012002513v1      26142 0 -    811324 C

a score=1354672.000000
s hg38.chr6_GL000254v2_alt  1849533 606 +   4827813 aaaaaaaccctt-----------------------ctgtctcaaaaaa-----aaaaaaaaaacccttctgtctca------aaaa----------------------aaataaa-----------------------------------ataaaacaaaaat-ataaaaat-ttggtgggtgtggtggcacacacctgtagtcccagctactcaggagactgaggcaggaagatcgcttgaacctgggagacagaagttgcagtgagccgagatcacaccactgcactccagcctgggcaacagagtaagactcttatctcagaaaataa------------------------g----taaatagataaataaataaaATGTATTTAAAC----TTTGTCACTTCACTCTTACTGTTTACTATTCTAAGTTCTTGAATTTATAGATATCAAAACACTGCACAGTTATTATTTCCAGATGAATAATAACACAATAACAATAGAAACAAGGAAAAGCCAAACAAATATACTATTTATAAGTTACAGCA-TGTGAGGATAACA---ATTAACTGATGATTTTCCTAAACCACAAAACAATGAATGTACAATGGTGACATGGCTGAACCAGCCGGTGGTGCCATAAATGATTCTCAGATGCTGCAGT-GCAGGAGACCCATCCATTGATGATCACTGTGATAGACTAAGACAAATAGTTAATTAGTTAATGAGATATT---
s panTro5.chr6             30695156 570 + 175400573 aaaaaa---------------------------------------------------------cccttctgtctca------aaaa----------------------aaataaat----------------------------------aaaaaataaaaat-ataaaaat-ttggtgggtgtggtggcacacacctgtagtcccagctactcaggagactgaggcaggaagatcgcttgaagctgggaggcagaagttgcagtgagccgagatcacaccactgcactccagcctggacaacaaagtaagactct-atctcagaaaataa------------------------g----taaaTAGATAAATAAATAAAATGTATTTAAAC----TTTGTCACTTCACTCTTACTGTTTACTATTCTAAGTTCTTGAATTTATAGATATCAAAACATTGCACAATTATTATTTCCAGATGAATAATAACACAATAACAATAGAAACAAGGAAAAGCCAAACAAATATACTATTTATAAGTTACAGCAGTGTGAGGATAATA---ATTAACTGATGATTTTCCTAAACCACAAAACAATGAATGTACAATGGTGACATGGCTGAACCAGCCGGTGGTGCCATAAATGATTCTCAGATGCTGCAGT-GCAGGAGACCCATCCATTGATGATCACTGTGATAGACTAAGACAAATAGTTAAT--------GAGATATT---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31118469 570 + 173848474 aaaaaa---------------------------------------------------------CCCTTCTGTCTCA------AAAA----------------------AAAATAAT----------------------------------AAAAAAtaaaaat-ataaaaat-ttggtgggtgtggtggcacacacctgtagtcccagctactcaggagactgaggcaggaagatcgcttgaagctgggaggcagaagttgcagtgagccgagatcacaccactgcactccagcctggacaacaaagtaagactct-atctcagaaaataa------------------------g----taaatagataaataaataaaATGTATTTAAAC----TTTGTCACTTCACTCTTACTGTTTACTATTCTAAGTTCTTGAATTTATAGATATCAAAACACTGCACAATTATTATTTCCAGATGAATAATAACACAATAACAATAGAAACAAGGAAAAGCCAAACAAATATACTATTTATAAGTTACAGCAGTGTGAGGATAATA---ATTAACTGATGATTTTCCTAAACCACAAAACAATGAATGTACAATGGTGACATGGCTGAACCAGCCGGTGGTGCCATAAATGATTCTCAGATGCTGCAGT-GCAGGAGACCCATCCATTGATGATCACTGTGATAGACTAAGACAAATAGTTAAT--------GAGATATT---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     625766 565 +   2037526 aaaaaa---------------------------------------------------------cccttctgtctca------aaaa----------------------aaataaa-----------------------------------ataaa--aaaaat-ataaaaat-ttggtgggtgtggtggcacacacctgtagtcccagctactcaggagactgaggcaggaagatcgcttgaacctgggaggcagaagttgcagtgagccgagatcacgccactgcactccagcctgggcaacagagtaagactct-atctcagaaaataa------------------------g----taaaTAGATAAATAAATAAAATGTATTTAAAC----TTTGTCACTTCACTC--ACTGTTTACTATTCTAAGTTCTTGAATTTATAGATATCAAAACACTGCACAATTATTATTTCCAGATGAATAATAACACAATAACAACAGAAACAAGGAAAAGCCAAACAAATATACTATTTATAAGTTACAGCAGTGTGAGGATAATA---ATTAACTGATGATTTTCCTAAACCACAAAACAATGAATGTACAATGGTGACATGGCTGAACCAGCCGGTGGTGCCATAAATGATTCTCAGATGCTGCAGT-GCAGGAGACCCATCCATTGATGATCACTGTGATAGACTAAGACAAATAGTTAAT--------GAGATATT---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75300986 571 + 122973662 aaaaaa---------------------------------------------------------accttctgtctca------aaaa----------------------aataaaat----------------------------------aaaa---caaaat-ataaaaat-taggtgggtgtggtggcacgcacctgtagtcccagctgctcaggagactgaggcaggaagatcgcttgaacctgggaggcagaagttgcagtgagccgagatcacaccacttcactccagctcgggcaacagagtaagactct-atctcaaaaaataa------------------------gtaaataaaTAGATAAATAAATAAAATGTATTTAAAC----TTTGTCACTTCACTCTTACTGTTTACTATTCTAAGTTCTTGAATTTATAGATATCAAAACACTGCACAATTATTATTTCCAGATGAACAATAACACAATAACAATAGAAACAAGGAAAAGCCAAACAAATATACTATTTATAAGTTACAGCAGTGTGAGGATAATA---ATTAACCTATGATTTTCCTAAACCACAAAACAATGAATGTACAATGGTGACATGGCTGAACCAGCCAGTGGTGCCATAAATGATTCTCAGATGTTGCAGT-GCAGGAGACCCATCCATTCATGATCACTGTGATAGCCTAAGACAAATAGTTAAT--------GAGATATT---
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30884340 568 + 171630274 ------------------------------------------------------------------CTCTATCTCT------AAAA---------------------TAAATAAAC--------------------------------AAATAAAAtaaaaat-acaaaaat-tagccaggcatggtggcacatgcctgtagtcccagctactcggaaggttgagacaggaggatctcttgaacccaggaggcagaagttgcagggagccaagattgcaccactgcactccggcctgggcaacagagtaagactcc-atctcaaaaaataa------------------------aTAGATAGATAAATACATAAGCAAAATGTATTTAAGT----TTTGTCACTTCACTCTTACTGTTTACTATTCTAAGTTCTTAAATTTATAGATATCAAAACACTGCACAATTATTATTTCCAGATGAATAACAACACATTAACAATAGAAACAAGGAAAAGCCAAACAAATATACTATTTCGAAGTTACAGCAGTATGAGGATAATA---ATTAACTGATGATTTTCCTAAAGCACAAAACAGTGAATGTACAATGGTGACATGGCTGCACTGGCAGGTGGTGCCATAAATGAGTCTCAGATGTTGCAGT-GCAGGAGGCCCATCCGTTGGTGATCACTGTGAGAGTCTAAGACAAAGAGTTAAT--------GAGACATT---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            47323 583 -    750284 ------------------------------------------------------------------ctctatctca------aaaa---------------------taaataaac-------------------------------------aaataaaaat-acaaaaat-tagccgggcacagtggcacatgcctgtagtcccagctactcgggaggctgtggaagaaggatcgcttgaacccaggaggcaggagttgcatggagccgagattgaaccactgcactccagcctgggcaacagagtaagactcc-atctcaaaaaataaataaataaatagatagatagatagatagacagatagatagatagataAAATGTATTTAAGC----TTTGTCACTTCACTCTTACTGTTTACTATTCTAAGTTCTTGAATTTATAGATATCAAAACACTGCACA---ATTATTTCCAGATGAATAACAACACATTAACAATAGAAACAAGGAAAAGCCAAACAAATATGCTATTTAGAAGTTACAGCAGTATGAGGATAATA---ATTAACTGATGATTTTCCTAATGCACCAAACAGTGGATGTACACTGGTGACATGGCTGCACTGGCAGGTGGTGCCATGAATGATTCTCAGATGTTGCAGT-GCAGGAGG-CCATCCAGTGGTGACCACCGTGAGAGTCTAAGACAAAGAGTTAAT--------GAGACATT---
i saiBol1.JH378327         C 0 I 325
s cebCap1.NW_016107755v1    1295032 578 -   1771730 ------------------------------------------------------------------ctctatctca------aaaa---------------------taaataaac-------------------------------------aaagaaaaat-acaaaaat-tagccggccatggtggcacatgcctgtagtcccagccactcaggaggctgaggcaggaggatcgcttgaacccaggaggcagaagttgcagggagccaagattgaacgactgcactctagcctaggcaacagagtaagactcc-atttcaaaaaataaataaataaatggataa--------atagatagataaatacataaacaaaATGTATTTAAGC----TTTGTCACTTCACTCTTACTGTTTACTATTCTAAGTTCTTGAATTTATAGATATCAAAACACTGCACAATTATTACTTCCAGATGAATAACAACATATTAACAATAGAAACAAGGAAAAGCCAAACAAATATACTATTTAGAACTTACAGCAGTGTTAGGATAATA---ATTAACTGATGATTTTCCTAAAGCACAAAACAATGAATGTACACTGGTGACATGGCTGCACTGGCAGGTGGTGCCATGAATGTTTCTCAGATGTTGCAGT-GCCTGAGG-CCACCCACTGGTCATCACTGTGAGAGCCTAAGACAAAGAGTTAAT--------GAGGCATT---
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           666550 682 +  18854210 aaaaaAATCTTTAAATTCTTCTTGATTATTGCTTATTTTTTCACTGAATTATGAGCAATAACAATATGCTggctcagcacccaaagcacagtggttatggagccagccacatacactgagggtggcggattcaaacctggcctggaccagttaaaacaacagcaacaaaaacatagctgggcgttgtggcagacacctgtagtaccagctacttgggaggctgatgcaagagaatcgcttaagcccaagagttgaaggttgctgtaagctgtgat---gccacggcactctaccaagggcaacatagtaagactct-gtctca-aaaataa------------------------a------------taaataaaTAAAATGTATTTCAGCTTCATTTTTCACTTCATTCTTACTGTTTAGTTTTCCAAGTTCTTGAATTTATAGATATCAGAACACTGCACAGTTACTATTTCCAGAAGAATA--AGCACACTAACAAGAACAAAAAG--AAAATCAAACAGATTCACTATTTAGAAGTGACAGCAGTAGGAGGATGATGATTATTAACTGATGATTTTCCTAAATCACAAAA-ATTGTTCTTGCCATCATG---TGACTGAACTGGCAAGTGGTAATACAAATATTTCTGAGATGTTGCAGTGGTAAGAGACCCACTCATTGATGGCTACTGTGATAGCCTAAGACCAATAGCTAAT--------GAATTTGTTTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e cerAty1.NW_012002513v1      26142   0 -    811324 C

a score=605925.000000
s hg38.chr6_GL000254v2_alt  1850139 253 +   4827813 AGAATTTCTAGTACTTATTAATTTTACCACCTATCACGATAACCATTCTATTTTCTGtaacaatcagtattggctgtactagtgcacactggctggatgccagTGTGTAAGACAATGCCATAAAGGGCTATATGAGCATTAGCTACTATGCTATGACTTTTAAC--------ATTGAGTTGATTAGGTTCAAGGGTCAGGTGGGGCACTTTTAGAAATTACAGTAACAGAGGCCCTCAGGAGGTAGGA----------------------TTCCC---ttttcttt
s panTro5.chr6             30695726 250 + 175400573 AGAATTTCTAGTACTTATTAATTTTACCACCTATCACGATTACCATTCTATTTTCTGtaacaatcagtattggctgtactagtgcacactggctggatgccagTGTGTAAGACAATGCCATAAAGGGCTATATGAGCATTAGCTACTAT---ATGACTTTTAAC--------ATTGAGTTGATTAGGTTCAAGGGTCAGGTGGGGCACTTTTAGAAATTACAGTAACAGAGGCCCTCAGGAGGTAGGA----------------------TTCCC---ttttcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31119039 253 + 173848474 AGAATTTCTAGTACTTATTAATTTTACCACCTATCACGATTACCATTCTATTTTCTGtaacaatcagtattggctgtactagtgcacactggctggatgccagTGTGTAAGACAATGCCATAAAGGGCTATATGAGCATTAGCTACTATGCTATGACTTTTAAC--------ATTGAGTTGATTAGGTTCAAGGGTCAGGTGGGGCACTTTTAGAAATTACAGTAACAGAGGCCCTCAGGAAGTAGGA----------------------TTCCC---ttttcttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     626331 253 +   2037526 AGAATTTCTAGTACTTATTAATTTTACCACCTATCACGATTACCATTCTATTTTCTGtaacaatcagtattggctgtactagtgcacactggctggatgccagTGTGTAAGACAATGCCATAAAGGGCTATATGAGCATTAGCTACTATGCTATGACTTTTAAC--------ATTGAGTTGATTAGGTTCAAGGGTCAGGTAGGGCACTTTTAGAAATTACAGTAACAGAGGCCCTCAGGAGGTAGGA----------------------TTCCC---TCtttttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75301557 263 + 122973662 AGAATTTCTAGTACTTATTAATTTTACCACCTATCACGATTGCCATTCTATTTTCTGtaacaatcagtattggctgtactagtgcacactggctggatgccagTGTGTAAGACAATGCCATAAAGGGCTATATGAGCATTAGCTACTATGCTACGACTTTTAACA-TTAAGTATTGAGTTGATTAGGTTCAAGGGTCAGGAGGGGCACTTTTAGAAATTACAGTAACAGAGGCCCTCAGGAGGTAGGA----------------------TTCCCttttttttttt
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30884908 261 + 171630274 AGAATTTTTAGTACTTCTTAATTTTACCACCTATCACG-----CATTCTATTTTCTGtaacagtcagta-tggctgtgctagtgcacaccggctggatgccagTGTGTGAGACAGTGCCATGAAGGGCTATATGAGCATGCACTACCATGCTGTGACTTTTAACA-TTAAGTATTGAG-TGATTAGGTGCAAGGGTCAGATGGGGCACTTTTAGAAATTACAGTAATAGAGGCCCTCAGGAGGTAGGA--------------ttttttttttttt---tttttttt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            48231 271 -    750284 agaaTTTATAGTACTTCTTAATTTCA-TGCTTAC---------CATTCTATTTTCTGTAACAGTCAGTA-TGGCTGTGCTAGTTGACACTGGCTGGATGCCAGTGTGTGAGACAGTGCCATAAAGGGCTGTATGAGCACTCACTACTATGCTGTGACTTTTAACA-TTAAGTATTGAGTTGATTCGGCGCAAGGGTCAGGTGGGGCACTTTTAGAAATTACAGTAATAGAGGCCCTCAGGAGGTAGGAttttttttttttttttttttttttttt---tttttttt
i saiBol1.JH378327         I 325 C 0
s cebCap1.NW_016107755v1    1295610 265 -   1771730 AGAATTTATAGTACTTCTTAATTTTACCACCTATCTCGCTTACCACCCTATTTTCTGTAACAGTCAGTA-TGGCTCTGCTAGTGCACACTGGCTGGATGCCAGCGTGTGAGACAGTGCCGTAAAGGGCTGCATGAGCATTCACTACGGTGCTGTGACTTGTAACA-TTAAGTATTGAGTTGATTGGGCGCAAGTGTCAGGTGGGGCACTTTTAGAAATTACAGTAATAGAAGGCCTCAGGAGGTAGGA----------------ttctttttttt---tttttttt
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           667232 241 +  18854210 AGAATTTATAATATTTAGTAATTTTACCACCTATCA--GTTATTCTTGTGTTTTCCCTAACAGTAAGTA-TAATTGTACAAGTGGGTACTGGCT----------------GAGAGTACCACAAAGGGCTGTTTGAGCATGAGCTAATGGGTTAGGACTTTTAAAACTTAAGCACTGAATTAATGAGGTTTGGGAATCAGGT-GGACACTTTTAGAAATTACAATAATAAGGGCCCCTAGGGGGCAAGA----------------------TTCTC---TTGATTTT
i otoGar3.GL873550         C 0 I 1367
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e cerAty1.NW_012002513v1      26142   0 -    811324 C

a score=258930.000000
s hg38.chr6_GL000254v2_alt  1850392 121 +   4827813 ttggagacagagtcttacgctgtcacccaggctggagtgcaatggcgggatatcggctcactgcaacctccgcctcccaagttcaagcaatcctcccacctcagcctcttgagtagcaggg
s panTro5.chr6             30695976 121 + 175400573 ttggagacagagtcttacgctgtcacccaggctggagtgcaatggcgggatatcggctcactgcaacctccgcctcccaagttcaagcaatcctcccacctcagcctcttgagtagcaggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31119292 121 + 173848474 ttggagacagagtcttacgctgtcacccaggctggagtgcaatggcgggatatcggctcactgcaacctccgcctcccaagttcaagcaatcctcccacctcagcctcttgagtagcaggg
i panPan2.chr6             C 0 I 1313
s gorGor5.CYUI01015528v1     626584 121 +   2037526 ttggagacagagtcttacgctgtcacccaggctggagtgcaatggcgggatatcggctcactgcaacctctgcctcccaagttcaagcaatcctcccacctcagcctcttgagtagcaggg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75301820 119 + 122973662 ttggagacagggtcttacactgt--cccaggctggagtgcaatggcgggatatcggctcgctgcaacctccgcctcctgagttcaagcgatcctcccacctcagcctcctgagtagcaggg
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30885169 120 + 171630274 ttggagacagggtcttaccttgtcatccaggctggaatgcagttgcggggtcttcgctcaatgcaacctttgcc-cccgagttcaagcaatcctcccacctcagcctcctgagtagctagg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            48502 120 -    750284 ttggagacagagtcttattttgtcatctaggctggaatgcaattgcaggatcttcgctcaatgcaaccttggcc-cccgagttcaagcaatcctcccacctcagcctcctgagtagctagg
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1295875 120 -   1771730 ctggagacacggtcttaccttgtcatctaggctggaatgcaattgtggaatcttcgctcaatgcaaccttcacc-cccaagttcaagcaatcctcccacctcaacctcctgagtagctagg
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           667473 1367 +  18854210 I
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e cerAty1.NW_012002513v1      26142   0 -    811324 C

a score=81124.000000
s hg38.chr6_GL000254v2_alt  1850513 45 +   4827813 attacaggcatctgccaccacgcctggctaatttttgtattttta
s panTro5.chr6             30696097 45 + 175400573 attacaggcatctgccaccacccctggctaatttttgtattttta
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     626705 45 +   2037526 attacaggcatctgccaccatgcctggctaatttttgtattttta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75301939 45 + 122973662 attacaggcatctgccaccacgcctggctaatttttgtattttta
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30885289 45 + 171630274 attacaggcaactgccaccatgcctggctaatttttgtattttta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            48622 45 -    750284 attacaggcaactgccaccatgcccggctaatttttgtattttta
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1295995 45 -   1771730 attacaggcaactgccaccgtgcccagctaatttttgtattttta
i cebCap1.NW_016107755v1   C 0 I 1507
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           667473 1367 +  18854210 I
e colAng1.NW_012115577v1     716425  0 -   1829203 C
e manLeu1.NW_012106264v1      59129  0 +    779361 C
e cerAty1.NW_012002513v1      26142  0 -    811324 C
e panPan2.chr6             31119413 1313 + 173848474 I

a score=361630.000000
s hg38.chr6_GL000254v2_alt  1850558 450 +   4827813 tttttatttttgttttgagatggagtttcattcttgttgcccaggctggagtgcaatagcgcaatcttggttcaccgcaacctccacctccgaggttcaagcaat--tcctgcctcagcctcctaggtagctgggattacagggatgtgccaccacacctcgctaattttgtatttttagtagagacgggttttcttttttt-ctttttttttttgggggggatggagtctggctctgtcgcccaggctggagtgcagtggcacgatctcgtgaggatggctcactgcaaactccatcacccgggttcaagggattcttctgcctcagcctcccaagtagctgagattacaggcgtctgccactgtgcctggctaatttttata--tttttgatagagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcag
s panTro5.chr6             30696142 449 + 175400573 tttttatttttgttttgagatggagtttcattcttgttgcccaggctggagtgcaatagcgcaatcttggttcaccgcaacctccacctccgaggttcaagcaat--tcctgccttagcctcctaagtagctgggattacagggatgtgccaccacacctcgctaattttgtatttttagtagagacgggttttcttttttttctttttttttttttggg--atggagtctggctctgttgcccaggctggagtgcagtggcacgatctcgtgaggatggctcactgcaaactccatcacccgggttcaagggattcttctgcctcagcctcccaagtagctgagattacaggcgtctgccactgtgcctggctaatttttata--tttttgatagagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcag
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     626750 449 +   2037526 tttttatttttgttttgagatggagtttcattcttgttgcccaggctggagtgcagtagcgcaatcttggttcaccgcaacctccacctccgaggttcaagcaat--tcctgcctcagcctcctaagtagctgggattacagggatgtgccaccacacctcgctaattttgtatttttagtagagacggtttttcttttttt--tttttttttttgggggggatggagtctggctctgtcgcccaggctggagtgcagtggcacgatctcgtgaggatggctcactgcaaactccatcacccgggttcaagggattcttctgcctcagcctcccaagtagctgagattacaggcgtctgccactgtgcctggctaatttttata--tttttgatagagacggggtttcaccatgttggccaggccggtctcaaactcctgacctcaggtgatcag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75301984 443 + 122973662 ttttta------ttttgagatagagtttcattcttgttgcccaggctggaatgcaatagcacaatcttggttcaccgcaacctccacctcccaggttcaagcaattctcctgcctcagcctcctaagtagctgggattacagggatgtaccaccacacccggcTAAttttgtatttttagtagagacggggtttcttttttt----ttttttttttggggggacggagtctggctctgtcacccaggctggagtgcagtggcacgatctcgtgaggatggctcactgcaacctccatcacccgggttcaagcgattcttctgcctcagcctcctgagtagctgagattacaggcgtctgccactgtgcctggctaatttttata--tttttaatagagacggggtttcaccgtgctggccaggctggtctcaaactcctgacctcaggtgatcag
i nomLeu3.chr1a            C 0 I 119
s calJac3.chr4             30885334 357 + 171630274 -------------------gtagagtttcacta-tgttggccaggctgg-------------------------------tctcgaactcctgacctcaagtgatccacctgcctcagcctcccaaagtgctgggattacaggtgtgagccaccgcactgggcc------------------------------tttttttt----tttttttttttaagagacagggtctaactgtgtcacccaggctggagtacactgacatgatc--------acggctcactgcagcctggagc-cccagactcaggtgatcctcacacctcagcctcc--agta-ctgggact-caggcaagtgccaccacacccagctaactttttaaatttttttatagaaatgaggtctcactatgttgcccaggctggtctcgaactcccagctttaagcaatctg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            48667 357 -    750284 -------------------gtagagtttcacca-tgttggccaggctgc-------------------------------tcttgaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgctgggattacaggtgtgagccactgAATTGGGCC-------------------------------ttttttt----tttttttttttaagagacagggtctcactctgtcacccaggctggagtacactgtcatgatt--------atggctcactgcagcctggaac-cccagactcaggtgatcctcacaccgcagcctcc--agta-ctgggactacaggcaagtgccaccacatccagctaatttttaaaatttttttatagaaatgagatctcactatgttgcccaggctggtctcaaactcccggctttaagcaatctg
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           667473 1367 +  18854210 I
e cebCap1.NW_016107755v1    1296040 1507 -   1771730 I
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e cerAty1.NW_012002513v1      26142   0 -    811324 C
e panPan2.chr6             31119413 1313 + 173848474 I

a score=49853.000000
s hg38.chr6_GL000254v2_alt  1851008 70 +   4827813 cccaccttggcctcccaaagggctgggattacaggcgtgagccaccgtgcccggcca--aggcagggtttct
s panTro5.chr6             30696591 70 + 175400573 cccaccttggcctcccaaagggctgggattacaggcgtgagccaccgtgcccggcca--aggcagggtttct
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     627199 70 +   2037526 cccaccttggcctcccaaagggctgggattacaggcgtgagccaccgtgcccggcca--aggcagggtttct
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30885691 71 + 171630274 cctatctcagcctcccaaattgctgaggttacaggcatgagccactgtgcccag-cAGTAGGTGGGATTCCT
i calJac3.chr4             C 0 I 890
s saiBol1.JH378327            49024 72 -    750284 cctatcttaacttcccaaagtgctgaggttacaggcatgagccattgtgcccagccAGTAGGTAGGATTCCT
i saiBol1.JH378327         C 0 I 1189
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           667473 1367 +  18854210 I
e cebCap1.NW_016107755v1    1296040 1507 -   1771730 I
e colAng1.NW_012115577v1     716425  0 -   1829203 C
e manLeu1.NW_012106264v1      59129  0 +    779361 C
e cerAty1.NW_012002513v1      26142  0 -    811324 C
e nomLeu3.chr1a            75302427 119 + 122973662 I
e panPan2.chr6             31119413 1313 + 173848474 I

a score=96957.000000
s hg38.chr6_GL000254v2_alt  1851078 352 +   4827813 ccatgttggtcagtccggtcttgaactcccgacctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccactgcgcccggcctaatttttgtatttttagtagagTAgagctgtgatcatgccactgtactctagcctgggtgacagagtgagatgagaccctgtctctt-aaaaaaaaaaaaatggccaggcgccatggcttatgcctgtaatcccaacactttgggaggctgaggcaggtggatcacttgaggtcaggagtttgagaccagcctggccaacatagtgaaaccctgtctctactaaaaatacaaaacttgccaggcgtggta
s panTro5.chr6             30696661 353 + 175400573 ccatgttggtcagtccggtcttgaactcccgatctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccactgcgcccggcgtaatttttgtatttttagtagagTAgagctgtgatcatgccactgtactctagcctgggtgacagagtgagatgagaccctgtctctttcaaaaaaaaaaaatggccaggcgccgtggcttatgcgtgtaatcccagcactttgggaggccgaggcaggtggatcacttgaggtcaggagtttgagaccagcctggccaacatagtgaaaccctgtctctactaaaaatacaaaacttgccgggcgtggta
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     627269 353 +   2037526 ccatgttggtcagtccggtcttgaactcccgacctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccactgcgcccggcctaatttttgtatttttagtagagTAgagctgtgatcatgccactgtactctagcctgcgtgacagagtgagatgagaccctgtctcttaaaaaaaaaaaaaaTggccaggcgccgtggcttatgcctgtaatcccagcactttgggaggccgaggcaggtggatcacttgaggtcaggagtttgagaccagcctggccaacatagtgaaaccctgtctctactaaaaatacaaaacttgccgggcgtggta
i gorGor5.CYUI01015528v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            49096 1189 -    750284 I
e otoGar3.GL873550           667473 1367 +  18854210 I
e cebCap1.NW_016107755v1    1296040 1507 -   1771730 I
e calJac3.chr4             30885762 890 + 171630274 I
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e cerAty1.NW_012002513v1      26142   0 -    811324 C
e nomLeu3.chr1a            75302427 119 + 122973662 I
e panPan2.chr6             31119413 1313 + 173848474 I

a score=73998.000000
s hg38.chr6_GL000254v2_alt  1851430 135 +   4827813 gagggcgtcagtaattccaactacttgggaggatgaggcaggagaatcgcttgaagccaggaggcggaggttgtagtgagccaagatccccccattgcactccagcctgggcaacagagcaagactccgtctcaa
s panTro5.chr6             30697014 135 + 175400573 gagggcgtcagtaattccaactacttgggaggatgaggcaggagaatcgcttgaagccaggaggcggaggttgtagtgagccaagatccccccattgcactccagcctgggcaacagagcaagactccgtctcaa
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     627622 135 +   2037526 gagggcgtcagtaattccaactacttgggaggatgaggcaggagaatcgcttgaagccaggaggcggaggttgtagtgagccaagatccccccattgcactccagcctgggcaacagagcaagactccgtctcaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75302546 135 + 122973662 GAGGgcgtcagtaatcccaactacttgggaggctgaggcaggagaattgcttgaacccgggaggcagaggtggtagtgagccaagatccccccattgcactccagcctgggcaacagagcaagactccatctcaa
i nomLeu3.chr1a            I 119 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            49096 1189 -    750284 I
e otoGar3.GL873550           667473 1367 +  18854210 I
e cebCap1.NW_016107755v1    1296040 1507 -   1771730 I
e calJac3.chr4             30885762 890 + 171630274 I
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e cerAty1.NW_012002513v1      26142   0 -    811324 C
e panPan2.chr6             31119413 1313 + 173848474 I

a score=14504.000000
s hg38.chr6_GL000254v2_alt  1851565 24 +   4827813 aaaaaaa--------------gaaagaaagaaaagaaa
s panTro5.chr6             30697149 38 + 175400573 aaaaaaaaaaaaagaaagaaagaaagaaagaaaagaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31120726 24 + 173848474 aaagaaa--------------gaaagaaagaaaagaaa
i panPan2.chr6             I 1313 C 0
s gorGor5.CYUI01015528v1     627757 22 +   2037526 --aaaaa--------------gaaagaaagaaaagaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75302681 20 + 122973662 ----aaa--------------aaaaaaaagaaaagaaa
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            49096 1189 -    750284 I
e otoGar3.GL873550           667473 1367 +  18854210 I
e cebCap1.NW_016107755v1    1296040 1507 -   1771730 I
e calJac3.chr4             30885762 890 + 171630274 I
e colAng1.NW_012115577v1     716425  0 -   1829203 C
e manLeu1.NW_012106264v1      59129  0 +    779361 C
e cerAty1.NW_012002513v1      26142  0 -    811324 C

a score=5348.000000
s hg38.chr6_GL000254v2_alt  1851589 2 +   4827813 ag
s panTro5.chr6             30697187 2 + 175400573 ag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31120750 2 + 173848474 ag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     627779 2 +   2037526 ag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75302701 2 + 122973662 ag
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30886652 2 + 171630274 aG
i calJac3.chr4             I 890 C 0
s saiBol1.JH378327            50285 2 -    750284 AG
i saiBol1.JH378327         I 1189 C 0
s cebCap1.NW_016107755v1    1297547 2 -   1771730 aG
i cebCap1.NW_016107755v1   I 1507 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           667473 1367 +  18854210 I
e colAng1.NW_012115577v1     716425 0 -   1829203 C
e manLeu1.NW_012106264v1      59129 0 +    779361 C
e cerAty1.NW_012002513v1      26142 0 -    811324 C

a score=2165459.000000
s hg38.chr6_GL000254v2_alt  1851591 861 +   4827813 aaaa-gaaaaggaaaTATGCAGTCTATTTAGGAAAGAATGCA----TGAGTTTGTTCATAAAGCATAACAGTGGGCGTGGGT-AACCAATGAAGACTGCTCGGAATATCCA---TTAAGCACAAATTCCTGCGAAAATACATAAGACCACAGGCACCAGATTCCACAACAAAgtgtgtgtgtgtgt------cgacatgc----atgtgtgtgtgtgtgcacgcacatgcatgtgtgtgggggg-tgtgcctgtgtgtttgtgtgcacatgggtgtgtatgtgtgctggtgtgGAGAAAACCTGATTAATAATGTCCAAG---------CCACACTCCAAGACCTCTTCCACTCAGGCTGGGGTCCCAGGAGCAGATGGTGGGCAAAGGGCAGGAATAACCTGTGCCTCAAGCTGCAAACAGGATCCATAAAATAGCCAAAAGACAGTGTTCGGGGTGTAACTAAACTTATGAGGCAAAGAGGAGAGACTGGGAGAGGACT--GAGAGGAAAACCAGGTGTGAGGCtgtcatgcaaagcaggtcccttggggtcaccac----ctgttgttcaccagggctcaggataaaagccagaatatcgcatgctatgggttaagaaataggcttttgagggaattttcaattcagtgtcagcaagtaaagagaaagcatgagtccaattccttttatttttccatag-aagagcaaaccaggcacactactggacatgcaggtggaggggagggatgaggcagtgtgttattgctctccattatgagtcaagcatgagagcagccttatcaatgaagaggcacacaaacagcgtaggcacctagcactcttgattagagtgtcagttattgacaggttgtGCTAACCTGActtctaagatgg
s panTro5.chr6             30697189 865 + 175400573 aaaaaGCAAAGGAAATATGCAGTCTATTTAGGAAAGAATGCA----TGAGTTTGTTCATAAAGCATAACAGTGGGCGTGGGT-AACCAATGAAGACTGCTCGGGATATCCA---TTAAGCACAAATTCCTGCGAAAATACATAAGACCACAGGCACCAGATTCCACAACAAAgtgtgtgtgtgtgtgtgtgttgacatgc----atgtgtgtgtg----cacgcacatgcatgtgtgggggggggcatgcctgtgtgtttgtgtgcacatgggtgtgtatgtgtgctggtgtgGAGAAAACCTGATTAATAATGTCCAAG---------CCACACTCCAAGACCTCTTCCACTCAGGCTGGTGTCCCAGGAGCAGACGGTGGGCAAAGGGCAGGAATAACCTGTGCCTCAAGCTGCAAACAGGAGCCATAAAATAGCCAAAAGACAGTGTTCGGGGTGTAACTAAACTTATGAAGCAAAGAGGAGAGACTGGGAGAGGACT--GAGAGGAAAACCAGGTGTGAGGCtgtcatgcaaagcaggtcccttggggtcaccac----ctgttgttcaccagggctcaggataaaagccagaatatcgcatgctatgggttaagaaataggcttttgagggaattttcaattcagtgtcagcaagtaaagagaaagcatgagtccgattccttttatttttccatag-aagagcaaaccaggcacattactggacatgcaggtggaggggagggatgtggcagtgtgttattgctctccattatgagtcaagcatgagagcagccttatcaatgaagaggcacacaaacagcgtaggcacctagcactcttgattagagtgtcagttattgacaggttgtgctaacctgacttctaagatgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31120752 865 + 173848474 aaaaagcaaaggaaaTATGCAGTCTATTTAGGAAAGAATGCA----TGAGTTTGTTCATAAAGCATAACAGTGGGCGTGGGT-AACCAATGAAGACTGCTCGGGATATCCA---TTAAGCACAAATTCCTGTGAAAATACATAAGACCACAGGCACCAGATTCCACAACAAAgtgtgtgtgtgtgtgtgtgttgacatgc----atgtgtgtgtg----cacgcacatgcatgtgtgtgggggggcatgcctgtgtgtttgtgtgcacatgggtgtgtatgtgtgctggtgtgGAGAAAACCTGATTAATAATGTCCAAG---------CCACACTCCAAGACCTCTTCCACTCAGGCTGGGGTCCCAGGAGCAGACGGTGGGCAAAGGGCAGGAATAACCTGTGCCTCAAGCTGCAAACAGGAGCCATAAAATAGCCAAAAGACAGTGTTCGGGGTGTAACTAAACTTATGAAGCAAAGAGGAGAGACTGGGAGAGGACT--GAGAGGAAAACCAGGTGTGAGGCtgtcatgcaaagcaggtcccttggggtcaccac----ctgttgttcaccagggctcaggataaaagccagaatatcgcatgctatgggttaagaaataggcttttgagggaattttcaattcagtgtcagcaagtaaagagaaagcatgagtccgattccttttatttttccatag-aagagcaaaccaggcacattactggacatgcaggtggaggggagggatgtggcagtgtgttattgctctccattatgagtcaagcatgagagcagccttatcaatgaagaggcacacaaacagcgtaggcacctagcactcttgattagagtgtcagttattgacaggttgtgctaacctgacttctaagatgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     627781 863 +   2037526 aaaaAGCAAAGGAAATATGCAGTCTATTTAGGAAAGAATGCA----TGAGTTTGTTCATAAAGCATAACAGTGGGCGTGGGT-AACCAATGAAGACTGCTCGGGATATCCG---TTAAGCACAAATTCCTGCGAAAATACATAAGACCACAGGCACCAGATTCCACAACAAAgtgtgtgtgtgtgt----gtcgacatgc----atgtgtgtgtgtgtgcacgcacatgca--tgtgggggggggcgtgcctgtgtgtttgtgtgcacatgggtgtgtatgtgtgctggtgtgGAGAAAACCTGATTAATAATGTCCAAG---------CCACACTCCAAGACCTCTTCCACTCAGGCTGGGGTCCCAGGAGCAGACGGTGGGCAAAGGGCAGGAATAACCTGTGCCTCAAGCTGCAAACAGGAGCCATAAAATAGCCAAAAGACAGTGTTCGGGGTGTAACTAAACTTATGAGGCAAAGAGGAGAGACTGGGAGAGGACT--GAGAGGAAAACCAGGTGTGAGGCtgtcatgcaaagcaggtcccttggagtcaccac----ctgttgttcaccagggctcaggataaaagccagaatatcgcatgctatgggttaagaagtaggcttttgagggaattttcaattcagtgtcagcaagtaaagagaaagcatgagtccgattccttttatttttccatag-aagagcaaaccaggcacactactggacatgcaggtggaggggagagatgcggcagtgtgttattgctctccattatgagtcaagcatgagagcagccttatcaatgaagaggcacacaaacagcgtaggcacctagcactcttgattagagtgtcagttattgacagCGtgtgctaacctgacttctaagatgg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75302703 855 + 122973662 aaaaaCCAAAGGAAATATGCAGTCTATTTAGGAAAGAATGCA----TGAGTTTGTTCATAAAGCATAACAGTGGGCGTGGGT-AACCAATGAAGACTGCTCAAGATATCCA---TTAAGCACAAATTCCTGCGAAAATACATAAGACCACAGGCACCAGATTCCACAACAAAgtgcgtgtgtgtgt------cgacatgc----atgtgtg--------catgcacatgcatgtgtgtgagggggtgtgcctgtgtgtttgtgtgcacatgggtgtgtatgtgtgctggtgtgGAGAAAACCTGATTAATAATGTCCAAG---------CCACACTCCAAGACCTCTTCCACTCAGGCTGGGGTCCCAGGAGCAGATGGTGGGCAAAGAGCAGAAATAATCTGTGCCTCAAGCTGCAAACAGGAGCCATAAAATAGCCAAAAGACAGTGTTCGGGGTGTAACTAAACTTATGAGTCAAAGAGGAGAGACTGGGAGAGGGCT--GAGAGGAAAACCAGGTGTGAGGTtgtcatgcaaagcaggtcccttggggtcaccac----ctgttgttcaccagagcccaggataaaagccagaatatcacatgctatgggttaagaaataggcttttgagggaattttcaattcagtgtcagcaagtaaagagaaagcatgagtccgattccttctatttttccacag-aagagcaaaccaggcacactactggacatgcaggtggaggggagggatgcggcagtgtgttattgctctccattatgggtcaagcatgagagcagccttatcaatgaaggggcacacaaacagcgtaggcacctagcactcttgattagagtgtcagttattgacagggtgtggtaatctgacttctaaggtgg
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30886654 830 + 171630274 AAAA-GCAAAGGAAATATGCAGTCTATTTAGGAAAGAATGCA----TGAGTTTGTTCATAAAGCATAACAGTTGGTGTGGGTAAACCAATGAAGACTGCTTGATATATCCA---TTAAGCACAAATTCATGGGAATACACATAAGAGCACAGCCACCAGATTCCACAACAAAgtgcatgtgtgtgt----gttggcatgc----gtgtgtgtgtg------------------tgtg--------tgtgtgtgcgtgcatgtgtgcacatgggtg----tgtgtgCTGGTGTGGAGAAAACCTGACTAATAATGTCCAAG---------CCGCTCTCCAAGACATCTTCCACTCAGG-----GTCCCAGGAGCAGATGGTGGGCAAAGCGTAGGCA-AATCGGTCCCTCAAGCTGCAGACAAGAGCCATAAAATAGCCAAAAGGCAGTGTTTGGGGTGAAACTAAACTTATGATGCAAAGAGGAGAGACTGGGAGAGGGCTGCGAGAGGAAAACCAGGTGCGAGGTTGTCATGCAAAGCAGGTCCCTTGGGCTCATCAC----CTGTGGTTCACCAGGGATCAGGATAAAAGCCAGAATATCACATGCTATGGATAAAAAAACAGGC-TTTGAGGGAATTTTCAATTCAGTGCCAGTAAGTAAAGAGAAGGCATGAGTCCCATTCCTTCTATTTTTCCATAG-AAGAGCAAACTGGGCACGCTACTGGACATGCAGGCAGAGGGGAGGTATGCGGCAGTGGGTTATTGCTCTCCACTGTAAGTCAAGCATGAGAGCAGCCTTATCAATGAAGAGACACACAAACAGCGTGGGCACCTAGCACTCTTGATTAGCGTGTCAGTTATTGACAGGGtgtggtaagctgacttctaaggtgg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            50287 847 -    750284 AAAA-GCAAAGGAAATATGCAGTCTATTTAGGAAAGAATGCA----TGAGTTTGTTCATAAAGTGTAACAGTGAGTGTGGGT-AACCAATGAAGACTGCTTGATATATCCA---TTAAGCACAAATTCATGTGAGTACACATAAGAGCACAGCCACCAGATTCCGCAACAAAgtgcatgtgtgtgt----gttggcatgcacgtgtctgtgtgtg------------------tgtg--------tgtgtgtgcgtgtgtgtgtgcacatgggtgtgtatgtgtgCTGGTGTGGAGAAAACCTGATCAATAATGTCCAAGACATTCTCCACATTCTCCAGGACCTCTTCCAATCAGG-----GTCCCAGGAGCAGATGGTGGGCAAAGGGCAGGAAGAATCAGTCCCTCAAGCTGCAGACAAGAGCCATAATACAGCCAAAAGGCAGTGTTT-GGGTGAAACTGAACTTACAAGGCAAAGAGGAGAGACTGGGAGAGGGCTGGGAGAGGAAAACCAGGTGCGAGGTtgtcatgcaaagcaggtctcttggggtcatcac----atgctgttcaccagggctcaggataaaagccagaatatcacacgctatggattaagaaacaggcttttgaaggaactttcaattcagtgtcagtaagtaaagagaaagtgtgagtcccattccttctatttttccatag-aagagcaaactgggcacgctacttgacatgcaggcggaggggaggtacgcggccgtgtgttattgctctccactgtaagtcaagcacgagagcagccttatcaatgaagagacacacaaacagcacgggcacctggcactcttgattagagtgtcagttattgacagggtgtggtaagctgacttctaaggtgg
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1297549 834 -   1771730 AAAA-GCAAAGGAAATATGCAGTCTATTTAGGAAAGAATGCA----TGAGTTTGTTCATAAAGCATAACAGTTGGTGTGGGT-AACCAATGAAGACTGCTTGATATATCCA---TTAAGCACAAATTCATGTGAGTACACATAAGAGCATAGCCACCAGATTCCACAACAAAGTGCAtgtgtgtgt----gttggcatgc----atgtgcgtgcg------------------cgcg--------cgcgcgtgtgtgtgtgtgtgcacatgggtgtgtatgtgtgCTGGTATGGAGAAAACCTAATCAATAATGTCCAAG---------ACATTCTCCAGGACCTCTTCTACTCAGG-----TTCCCCAGAGCAGATGGTGGGCAAAGAGCAAGAAGAATCGGTCCCTCAAGCTGCAGACAAGAGCCACAA-ATAGCCAAAAGGCAGTGTTTGAGGTGAAACTAAACTTACAAGGCAAAGAGGAGAGACTGGGAGAGGGCTGTGAGAGGAAAACCAGGTGCGAGGTtgtcatgcaaagcaggtcccttggggtcatcgc----ctgtggttcaccagggctcaggataaaagccagaatatcacatgctatggattaagaaacaggcttttcaaagaactttcaattcagtgtcagtaagtaaagagaaggcatgagttccattccttcaatttttccatag-aagagcaaactgggcacgctactggacatgcaggcggaggggaggtacgtggcggtgtgttattcctctccactgtaagtcaagcatgagagcagccttatcaatgaaaagacacacaaacagcgtgggcacctagcactcttgattagagtgtcagttattgacagggtgtggtaagctgacttctaaggtgg
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           668840 761 +  18854210 aAAA-GCGAAGGAAATGTGTAGTCTATTTAGGAAAGAATGCATAAGTGAGTTTGTTCATAAAGTTTAACAGGGAGTGTGAGG-AACACATGAAGACTACTTAATGTATATATTGTTAAGTACACATATGGGTAGGTATATGTAAGATCATAG---------CTCACAACGAA---------------------------C---------------------------------------------------------------------------TGTATGTGGGCTGGTGTGGAGCAGACCTGATCAGTGATGTCAAAC---------CCACTCTCACAGATATCTTCCCCTCTGGCTGGGGTCCCAGGAACAGCTGGTAGGCAAAGGGTGGGAAGAATCTGTCCCACAAACTGCAGACAGAACCCATAAGATAGACAAAAGGCAGC-CCAGGGGTGCAACTGGGCTTATGAGGCAAAGAGGAGAGA-TGGGTGTGA-----GAGAGGAAAACTGGGTGTAAGGTtgtcatgcaaagcagacccaatgagatcaccacctatctgttcttcaccagggctcaaagtaaaagtcagactatcacatgctccaggttaagaagggagatttgggggtaattttcaattcagtgtcagcaagtaaagagaagccaaaagttccattccttctgttactccacagcaggagcaaatggggcaccgtactggacctgcagg----gtgtgggcatgtggcagtgtg-tgttgccctctgttatcaggcaagcacaaga--agcctaatcaatgaagagacacacagactacttaggcacctggcattcctgatgagcctgtcagttttttacaggGCGTGGCAAGCAAGCCACTTATTTGG
i otoGar3.GL873550         I 1367 I 278
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e cerAty1.NW_012002513v1      26142   0 -    811324 C

a score=1084034.000000
s hg38.chr6_GL000254v2_alt  1852452 473 +   4827813 tctccagtga-tcccccatcttagtattcgagtctttgtggaatccttcccaccttgagtttggtatggaccttgtcacttaattctaaccaatggaatatgacaaaggtgaaagtctatcatatccatgagtagacaataagagtttgtggcttttatcttgctagcaga----ctcatttactgactcaagtaatcaagctgccatgttaaggaggtccatgtggtgaggaactgagagtgctctcaactcaacattcaagaggaaccaaa-ccttcagtcctaccacccttcgtgcttcctaccaacaactaagttagtgagcttggaagctcatcctttcctagttgagtcttcagggaagaccccaactatgattgcagccttgaggggccctgaagagaggacccagctatgctgtattgaattgctgtccttcaaatattgtgagataataagggtgtgttgttttaagcca
s panTro5.chr6             30698054 473 + 175400573 tctccaatga-tcccccatcctagtattcaagtctttgtggaatccttcccaccttgagtttggtatggaccttgtcacttaattctaaccaatggaatatgacaaaggtgaaagtctatcatatccatgagtaggcaataagagtttgtggcttttatcttgctagcaga----ctcatttactgactcaagtaatcaagctgctatgttaaggaggtccatgtggtgaggaactgagagtgctctcaactcaacattcaagaggaaccaaa-ccttcagtcctaccagccttcgtgcttcctaccaacaactaagttagtgagcttggaagctcatcctttcctagttgagtcttcagggaagaccccaactatgattgcagccttgaggggccctgaagagaggatccagctatgctgtattgaattgctgtccttcaaatattgtgagataataagggtgtgttgttttaagcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31121617 473 + 173848474 tctccaatga-tcccccatcctagtattcaagtctttgtggaatccttcccaccttgagtttggtatggaccttgtcacttaattctaaccaatggaatatgacaaaggtgaaagtctatcatatccatgagtaggcaataagagtttgtggcttttatcttgctagcaga----ctcatttactgactcaagtaatcaagctgctatgttaaggaggtccatgtggtgaggaactgagagtgctctcaactcaacattcaagaggaaccaaa-ccttcagtcctaccagccttcgtgcttcctaccaacaactaagttagtgagcttggaagctcatcctttcctagttgagtcttcagggaagaccccaactatgattgcagccttgaggggccctgaagagaggatccagctatgctgtattgaattgctgtccttcaaatattgtgagataataagggtgtgttgttttaagcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     628644 473 +   2037526 tctccaatga-tcccccatcctagtattcaagtctttgtggaatccttcccaccttgagtttggtatggaccttgtcacttaattctaaccaatggaatatgacaaaggtgaaagtctatcatatccgtgagtaggcaataagagtttgtggcttttatcttgctagcaga----ctcatttactgactcaagtaatcaagctgccatgttaaggaggtccatgtggtgaggaactgagagtgctctcaactcaacattcaagaggaaccaaa-ccttcagtcttaccacccttcgtgcttcctaccaacaactaagttagtgagcttggaagctcatcccttcctagttgagtcttcagggaagaccccaactatgattgcagccttgaggggccctgaagagaggacccagctatgctgtattgaattgctgtccttcaaatattgtgagataataagggtgtgttgttttaagcca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75303558 477 + 122973662 tctccaatga-tcccccatcccagtattcaagtctttgtggaatccttcccaccttgagtttggtatggacctagtcacttaattctaaccaatggaatatgacaaaggtgaaagtctatcatatccatgagtaagcaataagagtttgtggcttttatcttgccagcagactctctcatttactgactcaggtaatcaagctgccatgttaaagaggtccatgtggtgaggaactgagagtgctctcaactcaacattcaagaggaaccaaa-ccttcagttccaccacccttcatgcttcctaccaacaactaagttagtgagcttggaagtgcatcctttcctagttgaggcttcagagaagaccccaactatgattgcagccttgagaggccctgaagagaggacccagctatgctgtattcaattgctgtccttcaaatattgtgagataataagggtgtgttgttttaagtca
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30887484 476 + 171630274 tctccagtag-tcccccatcctggtattcaagcctttgtgggatccttcccaccttgagtttgatatgaatctagtcacttaattctaaccaatggaatatgacaaaggtgagaatctatcatatccatgattacgcaataagagtttgtggcttttatcttgctagctgactctctcatttactgacttaaggaagcaagctgccatgttagagaggtccgtgtggtgcggaactgagagtgctctctatccaacatccaagcggaaccagagccttca--cctaccacccttcctgcttcctaccagcaactaagccagtgagcttgaaagcgcctcctttcctagtcaagtcttcagagaagaccccaactgtgattgcagccttgagaggccctgaagagaagacccagctatgctgtattgaactgctggcctgcaaatattgtgagataataaaggtgtgttgttttaagcca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            51134 471 -    750284 tccctggtggttcccccattctggtattcaagcctttgtgggatccttcccaccgtgagtttggtatggatctagtcatttaattctaaccaatggaatatgacaaaggtgagagtctgtcatatccatgattaggcaataagagtttgtggcttttatcttgctagctga--ctctcatttactgacttagggaagcaagctgccatgttagagaggtccatgtgctgcggaactgagagtgctctccacccaacatccaagaggaaccagagccttca--cctactacccttcctgcttcctaccagcaactaagccagtgagcttggaagcgcctcctttcctagtcaagtcttcagagaagaccccaactatgattgcag----gagaggccctgaagagaggacccagctatgctgtattgaatttctgacctgcaaatattgtgagataataaaggtgtgttgttttaagcca
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1298383 474 -   1771730 tccccagtgg-ttccccatcctggtattcaagcttttgtgggatccttcccaccatgagtttggtatggatctagtcacttaattctaaccaatggaatatgacaaaggtgagagtctgtcatatccatgattaggcaataagtgtttgtggcttttatcttgctagctgactctctcatttactgactcaaggaagcaagctgccatgttagagaggtccatgtgctgcggaattgagagtgctctccatccaacatccaagaggaaccaaagccttcagtcctactacccttcctgcttcctaccagtaagtaagctagtgagcttggaagcacctcctttcctagtcaagtcttcagagaagaccccaactatgattgcag----gagaggccctgaagagaggacccagctatgctgttttaaactgctgacctgcaaatattgtgagataataaaggtgtgttgttttaagcca
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           669601 278 +  18854210 I
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e cerAty1.NW_012002513v1      26142   0 -    811324 C

a score=1073124.000000
s hg38.chr6_GL000254v2_alt  1852925 407 +   4827813 cttattttaggacaatttttatgctgtaatgataactaatatacaggagatgttcaaaaatacaagctacccaggaactggagacctaggggcccatggctagtcaca-cgtccctctgccaggagtgagaaaaacacccctggttccactggattctaacttttggaaaccccactcactggaagaagagggagccccaggttctaatgagtttgtt----tttcaggcaacccagaatgacctcccagcatcatttccagacagtgtggctcctgacatcacaAATATAGTAGAATAACACCAAACTGAGTAAATAG------GACAGTAGGCTGCAGACCCCCTCATGTGCCAATGATCTTTATAAAGACTTAAAACCTCACTATGCATAGAGTTGATAAAGGCACCAAATGAAC
s panTro5.chr6             30698527 407 + 175400573 cttattttaggacaatttttatgctgtaatgataactaatacacaggagatgttcaaaaatacaagctacccaggaactggagacctaggggcccatggctagtcaca-cgtccctctgccaggagtgagaaaaacacccctggttccactggattctaacttttggaaaccccactcactggaagaagagggagccccaggttctaatgagtttgtt----tttcaggcaacccagaatgacctcccagcatcatttccagacagtgtggctcctgacatcacaAATATAGTAGAATAACACCAAACTGAGTAAATAG------GACAGTAGGCTGCAGACCCCCTCATGTGCCAATGATCTTTATAAAGACTTAAAACCTCACTATGCATAGAGTTGATAAAGCCACCAAATGAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31122090 403 + 173848474 cttattttaggacaatttttatgctgtaatga----taaTACacaggagatgttcaaaaatacaagctacccaggaactggagatctaggggcccctggctagtcaca-cgtccctctgccaggagtgagaaaaacacccctggttccactggattctaacttttggaaaccccactcactggaagaagagggagccccaggttctaatgagtttgtt----tttcaggcaacccagaatgacctcccagcatcatttccagacagtgtggctcctgacatcacaAATATAGTAGAATAACACCAAACTGAGTAAATAG------GACAGTAGGCTGCAGACCCCCTCATGTGCCAATGATCTTTATAAAGACTTAAAACCTCACTATGCATAGAGTTGATAAAGCCACCAAATGAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     629117 407 +   2037526 cttattttaggacaatttttatgctgtaatgataactaatatacaggagatgttcaaaaatacaagctacccaggaactggagacctaggggcccatggctagtcaca-cgtccctctgccaggagtgagaaaaacactgctggttccactggattctaacttttggaaaccccactcactggaagaagagggagccccaggttctaatgagtttgtt----tttcaggcaacccagaatgacctcccagcatcatttccagacagtgtggctcctgacatcacaAATATAGTAGAATAACACCAAACTGAGTAAATAG------GACAGTAGGCTGCAGACCCCCTCATGTGCCAATGATCTTTATAAAGACTTAAAACCTCACTATGCATAGAGTTGATAAAGGCACCAAATGAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75304035 407 + 122973662 cttattttaggataatttttatgttgtaatgataactaatatacaggagatgttcaaaaataccagctactcaggaactggagacctaggggcccttggctagtcacg-ctcccctctgccaggagtgagaaaaacacccctggttccactggattctagcttttggaaaccccactcaccggaagaagagggagccccaggttctaatgagtttgtt----tttcaggcaacccagaatgacctcccagcatcatttccacacagtgttgctcctgacatcacaGATATAGTAGAGTAACACCAAACTGAGTAAATAG------GACAGTAGGCTGCAGACTCCCTCATGTGCCAATGATCTTTATAAAGACTCAAAACCTCACAATGCATAGAGTTGATAAAGGCACCAAATGAAC
i nomLeu3.chr1a            C 0 I 4
s calJac3.chr4             30887960 402 + 171630274 cttattttagggtgatttgtatgctataatcataactagtacaCTGGGGATGTTCAGAAATGCCAGCTACCCAGGAACTGGAGACCTAGGGACCCATGGCTAGTTGCA-CGCTCCTCTGCCAGGAGTGAGAAAAACACCACTGGTTCCACTGGATTCTAACTTTTGGAAACCTCACTCACT---AGAAGAAGGAGTCCCAGGTTCCAATTAGTTCATT----TTTCAGGCAACCCAGAATGAGCTCCCAACATCATTTCCAGACAGTGCTGCTCCTGATATCACAACTATAGTACAATAACAGCAGACTGAGTAAATAG------GACAGTAGGCTGCAGACCCCCTCATGTACCAATGATCTTTAT--AGACTTGAAACCTCACTATGCATGGAGTTGATAAAGGCGCCAAATGAAC
i calJac3.chr4             C 0 I 4
s saiBol1.JH378327            51605 407 -    750284 cttattttagggtaattcgtatgctataatgataactagtgcactggggatgttcggaaatgccagctacccaggaactggagacctaggtgcccatggctagtcgca-tgcccctctgccaggagtgagaaaaacaccactggttccgctggattctaacttttggaaaccccactcactagaagaagaaggagtcccacgttctaatgagttcatt----tttcaggcaacccagaatgaactcgcagcatcatttccagacagtgctgctcctgataccacaATTGTAGCAGAATAACAGCAAACTGAGTAAATAG------GATAGCAGGCTGCAGACCCCCTCGTGTACCAATGATCTTCATAGAGACTTGAAACCTCACTATGCATAGAGTTGATAAAGGCACCAAATGAAC
i saiBol1.JH378327         C 0 I 4
s cebCap1.NW_016107755v1    1298857 406 -   1771730 cttattttagggtaatttgtatgctataatgataactagtacactggggatgttcggaaatgccagctacacaggaactgtagacctgggggcccatggctagttgca-cacccctctgccaagagtgagaaaaacaccactggttccactggattctaacttttggaaacc-cactcactggaagaagaaggagtcccaggttctaatgagttcatt----tttcaggcaacccagaatgagctcccagcatcatttccagacagtgctgctcctgatatcacaACTACAGTAGAATAACAGCAGACTGAGTAAATAG------GACAGTAGGCTGCAGGCCCCCTCGTGTACCAATGATCTTTATAGAGACTTGAAACCTCACTATGCATAGAGTTGATAAAGGCACCAAATGAAC
i cebCap1.NW_016107755v1   C 0 I 4
s otoGar3.GL873550           669879 390 +  18854210 CCTGTTTGGGGTTAACTTTTATGAGTAACAGATAACTAATACAC-GGAGATGTTTGGGAATGCTATCTACCCACTAACTACAGACCTAGTGACCCAAGACAAGTCGCAGCCCCCCGCTGCCAGTTGTGAAAAA----------GCACCACTGACGTCTAACTTTTAG-AACCCCATTCCCTGGAAGAAGAGGGAGCCCCAGTTTCTAATAAGTTCATTATTCGTTCAGGCAGCCCAGAATAA-CACCCAGC-TCATTTTCAGACAGTGCTTCTCCTTACATGACAAAGACAATAG---AACACCCAACTGAGTAAATAGGGTGATGACAGTGGGCTGCAAACCCCC-AATGTGCCCATGACTTGTAGACA----------CTCACCATGCATAGAGTCGATAAAGGCACTAAATGACC
i otoGar3.GL873550         I 278 I 4
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e cerAty1.NW_012002513v1      26142   0 -    811324 C

a score=89309.000000
s hg38.chr6_GL000254v2_alt  1853332 28 +   4827813 CAGAGAAAGGAGACTCAAGTCAAGAAAA
s panTro5.chr6             30698934 28 + 175400573 CAGAGAAAGGAGACTCAAGTCAAGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31122493 28 + 173848474 CAGAGAAAGGAGACTCAAGTCAAGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     629524 28 +   2037526 CAGAGAAAGGAGACTCAAGTCAAGAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75304446 28 + 122973662 CAGAGAAAGGAGACTCGAGTCAAGAAAA
i nomLeu3.chr1a            I 4 I 4
s macFas5.chr4             30406696 28 - 170955103 CAGAGAAAAGAGACTCGAGTTGAGAACA
i macFas5.chr4             N 0 I 4
s calJac3.chr4             30888366 28 + 171630274 CAGAGGAAGAAGACTTGAGTCGAGAAAA
i calJac3.chr4             I 4 I 4
s saiBol1.JH378327            52016 25 -    750284 CAGAG---GAAGACTTGAGTCGAAAAAA
i saiBol1.JH378327         I 4 I 4
s cebCap1.NW_016107755v1    1299267 28 -   1771730 CAGAGGAAGAAGACTAGAGTCGAGAAAA
i cebCap1.NW_016107755v1   I 4 I 4
s otoGar3.GL873550           670273 28 +  18854210 CAGAGAAAGGAGACCAAAGCCAAGAAAA
i otoGar3.GL873550         I 4 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     716425  0 -   1829203 C
e manLeu1.NW_012106264v1      59129  0 +    779361 C
e cerAty1.NW_012002513v1      26142  0 -    811324 C

a score=690268.000000
s hg38.chr6_GL000254v2_alt  1853360 130 +   4827813 ----TGTATCTCAACTAGGAAATGTTTTTGTGACCACAAAGGGGAGGAACCAGGAAGTTGT-GGTAAACTGTAGCGGAAGTTAAAGCTAA--AAAAAAAAA---TGAGAGAGAACCAGTGAATTTAAAAATACTTAACAG
s panTro5.chr6             30698962 133 + 175400573 ----TGTATCTCAACTAGGAAATGTTTTTGTGACCACAAAGGGGAGGAACCAGGAAGTTGT-GGTAAACTGTAGCAGAAGTTAAAGCTAA--AAAAAAAAAAAATGAGAGAGAACCAGTGAATTTAAAAATACTTAACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31122521 130 + 173848474 ----TGTATCTCAACTAGGAAATGTTTTTGTGACCACAAAGGGGAGGAACCAGGAAGTTGT-GGTAAACTGTAGCAGAAGTTAAAGCTAA--AAAAAAAAA---TGAGAGAGAACCAGTGAATTTAAAAATACTTAACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     629552 130 +   2037526 ----TGTATCTCAACTAGGAAATGTTTTTGTGACCACAAAGGGGAGGAACCAGGAAGTTGT-GGTAAACTGTAGCGGAAGTTAAAGCTAA--AAAAAAAAA---TGAGAGAGAAACAGTGAATTTAAAAATACTTAACAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75304478 117 + 122973662 ----TGTATCTCAACTAAGAAATGTTTTTGTGACCACAAAGGGGAGGAACCAGGAAGTTGT-GGTAAACTGTAGCAGAAGTTAAGGCTAA--AAAAAAAAA---TGAGAGAGAACCAGTGAAT-----AAT--------G
i nomLeu3.chr1a            I 4 C 0
s rheMac8.chr4             31114667 124 + 172585720 ----TGTATCTCAACTAAGAAATGTTTTTGTGACCACAAAGGGGAGGAAACAGGAAGATGT-GGTCAACTGTGGCAGAAGTTAAGGCTAA--AAAAAAGAG---TGAAA------CAGTGAATTTAAAGATACTAAACAG
i rheMac8.chr4             N 0 C 0
s macFas5.chr4             30406728 124 - 170955103 ----TGTATCTCAACTAAGAAATGTTTTTGTGACCACAAAGGGGAGGAAACAGGAAGATGT-GGTCAACTGTGGCAGAAGTTAAGGCTAA--AAAAAAGAG---TGAAA------CAGTGAATTTAAAGATACTAAACAG
i macFas5.chr4             I 4 C 0
s macNem1.NW_012012100v1     661341 124 +   1495729 ----TGTATCTCAACTAAGAAATGTTTTTGTGACCACAAAGGGGAGGAAACAGGAAGATGT-GGTCAACTGTGGCAGAAGTTAAGGCTAA--AAAAAAGAG---TGAAA------CAGTGAATTTAAAGATACTAAACAG
i macNem1.NW_012012100v1   N 0 C 0
s chlSab2.chr17            29897922 124 -  71996105 ----TGTATCTCAACTAAGAAATGTTTTTGTGACCACAAAGGGGAGGAAACAGGAAGATGT-GGTCAACTGTGGCAGAAGTTAAGGCTAA--AAAAAAGAG---AGAAA------CCGTGAATTTAAAGATACTAAACAG
i chlSab2.chr17            N 0 C 0
s calJac3.chr4             30888398 130 + 171630274 ----TGTATCTCAACTAAGAAATGTTTCTGTGACCACAGAGAGGAGGAAACAGGAGGATGT-GGTAAACTGTGGCAGAAGTTAAGGCTaa--aaaaagaaa---aaagagagaaccaatgaatttaaagatacttaagag
i calJac3.chr4             I 4 C 0
s saiBol1.JH378327            52045 130 -    750284 ----TGTGTCTCAACTAAGAAATGTTTCCGTAACCACGAAGGGGAGGAAACAGGAGGATGT-GGTAAACTGTAGCAGAAGTTAAGGCTaa--aaaaagaaa---aacgagagagccaattaatttaaagatacttaagag
i saiBol1.JH378327         I 4 C 0
s cebCap1.NW_016107755v1    1299299 127 -   1771730 ----TGTATCACAACTAAGAAATGTTTCTGTAACCACAAAGGGTAGGAAACAGGAAGATGT-GGTAAACTGTGGCAGAAGTTAAGGCT-----AAAAGAAA---AAAGAGAGAACCAATGAATTTAAAGATACTTAAGAG
i cebCap1.NW_016107755v1   I 4 C 0
s otoGar3.GL873550           670301 137 +  18854210 TGTCTTTATTTCAACTAAGAAATGTTTTTAGTACCACAAAGAGGAGGAAACAGGAAGATGTGGGTGAATTGTGGCAAAAAGGAAAGCTGAACAGAAAAGAA---AAAGAGAGAGCCCGTGGATTAAAAGATACTTAAGAg
i otoGar3.GL873550         C 0 T 27656
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e cerAty1.NW_012002513v1      26142   0 -    811324 C

a score=195651.000000
s hg38.chr6_GL000254v2_alt  1853490 39 +   4827813 ACATAATGACAAAAAGTAGTAAGTACATCTCTTTGGATC
s panTro5.chr6             30699095 39 + 175400573 ACATAATGACAAAAATTAATAAGTACATCTCTTTGGATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31122651 39 + 173848474 ACATAATGACAAAAATTAATAAGTACATCTCTTTGGATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     629682 39 +   2037526 ACATAATGACAAAAATTAATAAGTACATCTCTTTGGATC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75304595 39 + 122973662 ACATAACGACAAAAATTAGTAAGTACATCTCTTTGGATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31114791 39 + 172585720 ACATAACGACAAAAATTAATAAATGCATCCCTTTGGATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30406852 39 - 170955103 ACATAACGACAAAAATTAATAAATGCATCCCTTTGGATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     661465 39 +   1495729 ACATAACGACAAAAATTAATAAATGCATCCCTTTGGATT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29898046 39 -  71996105 ACATAATGACAAAAATTAATAAATGCATCCCTTTGGATT
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30888528 39 + 171630274 acataacaacaaaaatcagtaagtgcatctctttggatc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            52175 36 -    750284 acat---aataaaaattaataagtgcatctctttggacc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1299426 39 -   1771730 ACATAAAAACAAAAATTAATAAGTGTATCTCTTTGGATC
i cebCap1.NW_016107755v1   C 0 I 4566
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425  0 -   1829203 C
e manLeu1.NW_012106264v1      59129  0 +    779361 C
e cerAty1.NW_012002513v1      26142  0 -    811324 C

a score=4190.000000
s hg38.chr6_GL000254v2_alt  1853529 1 +   4827813 G
s panTro5.chr6             30699134 1 + 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31122690 1 + 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     629721 1 +   2037526 G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75304634 1 + 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31114830 1 + 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30406891 1 - 170955103 G
i macFas5.chr4             C 0 I 619
s macNem1.NW_012012100v1     661504 1 +   1495729 G
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29898085 1 -  71996105 G
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30888567 1 + 171630274 a
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            52211 1 -    750284 g
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e cebCap1.NW_016107755v1    1299465 4566 -   1771730 I
e colAng1.NW_012115577v1     716425 0 -   1829203 C
e manLeu1.NW_012106264v1      59129 0 +    779361 C
e cerAty1.NW_012002513v1      26142 0 -    811324 C

a score=9977.000000
s hg38.chr6_GL000254v2_alt  1853530 2 +   4827813 TG
s panTro5.chr6             30699135 2 + 175400573 TG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31122691 2 + 173848474 TG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     629722 2 +   2037526 TG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75304635 2 + 122973662 TG
i nomLeu3.chr1a            C 0 I 622
s rheMac8.chr4             31114831 2 + 172585720 TG
i rheMac8.chr4             C 0 I 619
s macFas5.chr4             30407511 2 - 170955103 TG
i macFas5.chr4             I 619 C 0
s macNem1.NW_012012100v1     661505 2 +   1495729 TG
i macNem1.NW_012012100v1   C 0 I 619
s chlSab2.chr17            29898086 2 -  71996105 TG
i chlSab2.chr17            C 0 I 618
s calJac3.chr4             30888568 2 + 171630274 ta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            52212 2 -    750284 ta
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1304031 2 -   1771730 TG
i cebCap1.NW_016107755v1   I 4566 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425 0 -   1829203 C
e manLeu1.NW_012106264v1      59129 0 +    779361 C
e cerAty1.NW_012002513v1      26142 0 -    811324 C

a score=6006.000000
s hg38.chr6_GL000254v2_alt  1853532 1 +   4827813 A
s panTro5.chr6             30699137 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31122693 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     629724 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75305259 1 + 122973662 A
i nomLeu3.chr1a            I 622 C 0
s rheMac8.chr4             31115452 1 + 172585720 A
i rheMac8.chr4             I 619 C 0
s macFas5.chr4             30407513 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     662126 1 +   1495729 A
i macNem1.NW_012012100v1   I 619 C 0
s chlSab2.chr17            29898706 1 -  71996105 A
i chlSab2.chr17            I 618 C 0
s calJac3.chr4             30888570 1 + 171630274 a
i calJac3.chr4             C 0 N 0
s saiBol1.JH378327            52214 1 -    750284 a
i saiBol1.JH378327         C 0 I 610
s cebCap1.NW_016107755v1    1304033 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425 0 -   1829203 C
e manLeu1.NW_012106264v1      59129 0 +    779361 C
e cerAty1.NW_012002513v1      26142 0 -    811324 C

a score=10505.000000
s hg38.chr6_GL000254v2_alt  1853533 2 +   4827813 GA
s panTro5.chr6             30699138 2 + 175400573 GA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31122694 2 + 173848474 GA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     629725 2 +   2037526 GA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75305260 2 + 122973662 GA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31115453 2 + 172585720 GA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30407514 2 - 170955103 GA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     662127 2 +   1495729 GA
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29898707 2 -  71996105 GA
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30776753 2 + 171630274 GA
i calJac3.chr4             N 0 C 0
s cebCap1.NW_016107755v1    1304034 2 -   1771730 GA
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            52215 610 -    750284 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425 0 -   1829203 C
e manLeu1.NW_012106264v1      59129 0 +    779361 C
e cerAty1.NW_012002513v1      26142 0 -    811324 C

a score=407181.000000
s hg38.chr6_GL000254v2_alt  1853535 75 +   4827813 AAGAAGATCAGGAATGAAAGATCTAGCTGGGCCTTCCCCCACCCTCCCCAGCCTTGGTTCCCTGATTAGTGCTCC
s panTro5.chr6             30699140 75 + 175400573 AAGAAGATCAGGAACGAAAGATCTAGCTGGGCCTTCCCCCACCCTCCCCAGCCTTTGTTCCCTGATTAGTGCTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31122696 75 + 173848474 AAGAAGATCAGGAACGAAAGATCTAGCTGGGCCTTCCCCCACCCTCCCCAGCCTTTGTTCCCTGATTAGTGCTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     629727 75 +   2037526 AAGAAGATCAGGAACGAAAGATCTAGCTGGGCCTTCCCCCACCCTCCCCAGCCTTGGTTCCCTGATTAGTGCTCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75305262 75 + 122973662 AAGAAGGTCAGGAACGAAAGGTCAGCCTGGGCCTTCCCCCACCCTCCCCAGCCTTGGTTCCCTGATTAGTGCTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31115455 75 + 172585720 AAGAAGGTCAGGAATGAAAGGTCAGCCTGGGCCTTCCCCCACGCTCCCCAGCCTTGGTTCCCTAATTAGTGCTCC
i rheMac8.chr4             C 0 I 35
s macFas5.chr4             30407516 75 - 170955103 AAGAAGGTCAGGAACGAAAGGTCAGCCTGGGCCTTCCCCCACGCTCCCCAGCCTTGGTTCCCTAATTAGTGCTCC
i macFas5.chr4             C 0 I 11
s macNem1.NW_012012100v1     662129 75 +   1495729 AAGAAGGTCAGGAACGAAAGGTCAGCCTGGGCCTTCCCCCACGCTCCCCAGCCTTGGTTCCCTAATTAGTGCTCC
i macNem1.NW_012012100v1   C 0 I 35
s chlSab2.chr17            29898709 75 -  71996105 AAGAAGGTCAGGAACGAAAGGTCAGCCTGGGCCTTCCCCCAGGCTCCCCAGCCTTGGTTCCCTGATTAGTGCTCC
i chlSab2.chr17            C 0 I 35
s calJac3.chr4             30776755 74 + 171630274 AAGAAGGTGAGGAAAGAAAGGTCAGCCTGGGCCTTCCCCCACCCT-CCCAGCCTTGGTTCCCTGATTAGTGCTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            52825 75 -    750284 AGAAAGGTCAGGAAAGAAAGGTCAGCCTGGGCCTTCCCCCACCCTCCCCAGCCTTGGTTTCCTGATTAGTGCTCC
i saiBol1.JH378327         I 610 C 0
s cebCap1.NW_016107755v1    1304036 75 -   1771730 AAGAAGGTGAGGAAAGAAAGGTCAGCCTGGGCCTTCCCCCACCCTCCCCAGCCTTGGTTCCCTTATTAATGCTCC
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425  0 -   1829203 C
e manLeu1.NW_012106264v1      59129  0 +    779361 C
e cerAty1.NW_012002513v1      26142  0 -    811324 C

a score=49021.000000
s hg38.chr6_GL000254v2_alt  1853610 26 +   4827813 AGGCCT-----------CTCCAGGGCCTGACACTCAA
s panTro5.chr6             30699215 26 + 175400573 AGGCCT-----------CTCCAGGGCCTGACACTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31122771 26 + 173848474 AGGCCT-----------CTCCAGGGCCTGACACTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     629802 26 +   2037526 AGGCCT-----------CTCCAGGGCCTGACACTAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75305337 26 + 122973662 AGGCCT-----------CTCCAGGGCCTGACACTAAG
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30407602 24 - 170955103 AGCAAG-----------CTGCAGGGCCTGGCACTG--
i macFas5.chr4             I 11 C 0
s calJac3.chr4             30776829 35 + 171630274 GGACTCAAAGAAGCAAGCTGCAGGTCCTGGCACT--G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            52900 26 -    750284 AGGCCT-----------CTGCAAGGCCTGGCACTAAG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1304111 26 -   1771730 AGGCCT-----------CTGCAAGGCCTGGCACTAAG
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425  0 -   1829203 C
e manLeu1.NW_012106264v1      59129  0 +    779361 C
e chlSab2.chr17            29898784 35 -  71996105 I
e cerAty1.NW_012002513v1      26142  0 -    811324 C
e macNem1.NW_012012100v1     662204 35 +   1495729 I
e rheMac8.chr4             31115530 35 + 172585720 I

a score=264212.000000
s hg38.chr6_GL000254v2_alt  1853636 54 +   4827813 TCTTCTCTTGGGAACTAATTATGGCAATGTACCACGAGGTACTGTTCCTCAGAC
s panTro5.chr6             30699241 54 + 175400573 TCTTCTCTTGGGAACTAATTATGGCAATGTACCACGAGGTACTGTTCCTCAGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31122797 54 + 173848474 TCTTCTCTTGGGAACTAATTATGGCAATGTACCACGAGGTACTGTTCCTCAGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     629828 54 +   2037526 TCTTCTCTTGGGAACTAATTATGGCAATGTACCACGAGGTACTGTTCCTCAGAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75305363 54 + 122973662 TCTTCTCTTGGGAACTAATTATGGCAATGTACCACGAGGTACTGCTCCTCAGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31115565 54 + 172585720 TCTTCTATTTGGAGCTGATTATGGCAATGTACCACAGTGTACTATTGCTCAGAC
i rheMac8.chr4             I 35 C 0
s macFas5.chr4             30407626 54 - 170955103 TCTTCTATTTGGAGCTGATTATGGCAATGTACCACAGTGTACTATTGCTCAGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     662239 54 +   1495729 TCTTCTATTTGGAGCTGATTATGGCAATGTACCACAGTGTACTATTGCTCAGAC
i macNem1.NW_012012100v1   I 35 C 0
s chlSab2.chr17            29898819 54 -  71996105 TCTTCTATTTGGAGCTGATTATGGCAATGTACCACAGTGTACTATTGCTCAGAC
i chlSab2.chr17            I 35 C 0
s calJac3.chr4             30776864 54 + 171630274 TCTTCTCCTGGGAGCTGATTATGGCAATGTACCACAATGTACTATTGCTCAGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            52926 53 -    750284 TCTT-TCTTGGGAGCTGATTATGGCAATGTACCATGAAGTACGGTTGCTCAAAC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1304137 53 -   1771730 TCTT-TCTTGGGAGCTGATTATGACAATGTACCATGAAGTACTGTTGCTCAAAC
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425  0 -   1829203 C
e manLeu1.NW_012106264v1      59129  0 +    779361 C
e cerAty1.NW_012002513v1      26142  0 -    811324 C

a score=9828.000000
s hg38.chr6_GL000254v2_alt  1853690 3 +   4827813 TAA
s panTro5.chr6             30699295 3 + 175400573 TAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31122851 3 + 173848474 TAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     629882 3 +   2037526 TAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75305417 3 + 122973662 TAA
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            29898873 3 -  71996105 TAA
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30776918 3 + 171630274 TAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            52979 3 -    750284 TAA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1304190 3 -   1771730 TAA
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425 0 -   1829203 C
e manLeu1.NW_012106264v1      59129 0 +    779361 C
e cerAty1.NW_012002513v1      26142 0 -    811324 C
e macNem1.NW_012012100v1     662293 0 +   1495729 C
e macFas5.chr4             30407680 0 - 170955103 C
e rheMac8.chr4             31115619 0 + 172585720 C

a score=2548.000000
s hg38.chr6_GL000254v2_alt  1853693 1 +   4827813 A
s panTro5.chr6             30699298 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31122854 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     629885 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75305420 1 + 122973662 A
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            29898876 1 -  71996105 A
i chlSab2.chr17            C 0 I 4
s saiBol1.JH378327            52982 1 -    750284 A
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1304193 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e calJac3.chr4             30776921 0 + 171630274 C
e colAng1.NW_012115577v1     716425 0 -   1829203 C
e manLeu1.NW_012106264v1      59129 0 +    779361 C
e cerAty1.NW_012002513v1      26142 0 -    811324 C
e macNem1.NW_012012100v1     662293 0 +   1495729 C
e macFas5.chr4             30407680 0 - 170955103 C
e rheMac8.chr4             31115619 0 + 172585720 C

a score=516573.000000
s hg38.chr6_GL000254v2_alt  1853694 341 +   4827813 CGTGGtt-t---------tttgtttgtttgtttgttttttagacaggctctcactctgtcacccaggctggagtgcagtggcacaatctcagctcactgcaacctctgcctccccagttaaagcaattctcccacccacttcagcctccccagtagctgggactacaggtgcacgccaccatgccctgctttatttttattattattattattattattatttgtatttttggtagagacgaggtttcaccatgttggccaggctggtctcaaactcctgggctcaagtggtctgcccgcctcagattcccaaagtgctgggattacaggcatgagccactgtgcccagcG
s panTro5.chr6             30699299 334 + 175400573 CGTGGtt-t---------tttgtttgtttgttt----tttagacaggctctcactctgtcacccaggctggagtgcagtggcacaatctcagctcactgcaacctctgcctccccagttaaagcaattctcccacccacctcagcctccctagtagctgggactacaggtgcacgccaccatgccctgctttatttttattattattattattattatt---tgtatttttggtagagacgaggtttcaccatgttggccaggctggtctcaaactcctgggctcaagtggtctgcccgcctcagattcccaaagtggtgggattacaggcatgagccactgtgcccagcG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31122855 331 + 173848474 CGTGGtt-t---------tttgtttgtttgttt----tttagacaggctctcactctgtcacccaggctggagtgcagtggcacaatctcagctcactgcaacctctgcctccccagttaaagcaattctcccacccacctcagcctccctagtagctgggactacaggtgcacgccaccatgccctgctttatttttattattattattattatt------tgtatttttggtagagacgaggtttcaccatgttggccaggctggtctcaaactcctgggctcaagtggtctgcccgcctcagattcccaaagtggtgggattacaggcatgagccactgtgcccagcA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     629886 333 +   2037526 CGTGGtt-tttg------tttgtttgtttgttt----tttagacaggctctcactctgtcacccaggctggagtg-agtggcacaatctcagctcactgcaacctctgcctccccagttaaagcaattctcccacccacctcagcctccctagtagctgggactacaggtgcaagccaccatgccctgctttatttttattattattattattatt------tgtatttttggtagagacgaggtttcaccatgttggccaggctggtctcaaactcctgggctcaagtggtctgcccgcctcagattcccaaagtgctgggattacaggcatgagccactgtgcccagcG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75305421 340 + 122973662 CATGGtt-tttgtttgttttagtttgtttgttt----tttagacagactctcactctgtcacccaggctggagtgcagtggcacaatctcagctcactgcaacctctgcctccctggttcaagcaattctcccacccacctcagcctccccagtagctgggactacaggtgcacgccaccatgccctgctttatttttattattattattattttt------tgtatttttggtagagacgaggtttcaccatgttggccaggctggtctcaaactcctgggctcaagtgatccgcccgcctcggactcccaaagtgctgggattacaggcatgagccactgtgcccagcA
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378327            52983 331 -    750284 CGTGGTGTTTTGGGTCTGtttgtttgtttgtgt----tttagacagggtctctt----tcacccaggctggagtgcagtggcacaa-ctcagctcactgcaacctccgcctcccaggttcaagcaattctccaatc----tcagcttcctcagcagctgggactacaggtacacaccaccatgctctgcgatttttttttttttttttttttt-tt------tgtatttttggtagagatggggtttcaccatgttggccagactggtctcaaactcctgagctcaagtgatctgcgtgccttggcctcccaaagtgctgggattacaggcgtgagtcactgtgcctggcc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1304194 326 -   1771730 CGTGGTG-TTTGGAtttgtttgttcgtttgttt----tttaggcagggtctcat----tcaaccaggctggagtgcagtggcacaa-ctcagctcactgcaacctccacctcccaggttcaagcaattctccgatc----tcagctttctcagcagctgggactacaggtacacaccaccgtgctctgctaattttttttttttttttttttt-----------aatttttgggagagatggggtttcaccatgttggccagactagtctcaaactcctgagctcaagtgatctgcgtgccttggcctcccaaagtgctgagcttacaggcgtgagtcactgtgcctgtcc
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e calJac3.chr4             30776921   0 + 171630274 C
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e chlSab2.chr17            29898877   4 -  71996105 I
e cerAty1.NW_012002513v1      26142   0 -    811324 C
e macNem1.NW_012012100v1     662293   0 +   1495729 C
e macFas5.chr4             30407680   0 - 170955103 C
e rheMac8.chr4             31115619   0 + 172585720 C

a score=14986.000000
s hg38.chr6_GL000254v2_alt  1854035 5 +   4827813 TAAAC
s panTro5.chr6             30699633 5 + 175400573 TAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31123186 5 + 173848474 TAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     630219 5 +   2037526 TAAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75305761 5 + 122973662 TAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31115619 5 + 172585720 TAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30407680 5 - 170955103 TAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     662293 5 +   1495729 TAAAA
i macNem1.NW_012012100v1   C 0 C 0
s saiBol1.JH378327            53314 5 -    750284 TAAAC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1304520 5 -   1771730 TAAAC
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e calJac3.chr4             30776921 0 + 171630274 C
e colAng1.NW_012115577v1     716425 0 -   1829203 C
e manLeu1.NW_012106264v1      59129 0 +    779361 C
e chlSab2.chr17            29898877 4 -  71996105 I
e cerAty1.NW_012002513v1      26142 0 -    811324 C

a score=13638.000000
s hg38.chr6_GL000254v2_alt  1854040 3 +   4827813 GTG
s panTro5.chr6             30699638 3 + 175400573 GTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31123191 3 + 173848474 GTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     630224 3 +   2037526 GTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75305766 3 + 122973662 GTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31115624 3 + 172585720 GTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30407685 3 - 170955103 GTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     662298 3 +   1495729 GTG
i macNem1.NW_012012100v1   C 0 C 0
s calJac3.chr4             30776921 3 + 171630274 GTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            53319 3 -    750284 ATG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1304525 3 -   1771730 ATG
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425 0 -   1829203 C
e manLeu1.NW_012106264v1      59129 0 +    779361 C
e chlSab2.chr17            29898877 4 -  71996105 I
e cerAty1.NW_012002513v1      26142 0 -    811324 C

a score=255538.000000
s hg38.chr6_GL000254v2_alt  1854043 52 +   4827813 GTTTCTTATGTTTTTAAATTCCCCTTGAAAATATTCTCTTGTGACCAAAAAA
s panTro5.chr6             30699641 52 + 175400573 GTTTCTTATGTTTTTAAATTCCCCTTGAAAATATTCTCTTGTGACCAAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31123194 52 + 173848474 GTTTCTTATGTTTTTAAATTCCCCTTGAAAATATTCTCTTGTGACCAAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     630227 52 +   2037526 GTTTCTTATGTTTTTAAATTCCCCTTGAAAATATTCTCTTGTGACCAAAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75305769 43 + 122973662 GTTTCTTATGTTTTTAAATTCCGC---------TTCTCTTGTGACCAAAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31115627 49 + 172585720 GTTTCTTATGTTTTTTAATTCCCCTTGAAAA---TCTCTTGTGACCaaaaaa
i rheMac8.chr4             C 0 I 39
s macFas5.chr4             30407688 49 - 170955103 GTTTCTTATGTTTTTTAATTCCCCTTGAAAA---TCTCTTGTGACCaaaaaa
i macFas5.chr4             C 0 I 12
s macNem1.NW_012012100v1     662301 49 +   1495729 GTTTCTTATGTTTTTTAATTCCCCTTGAAAA---TCTCTTGTGACCaaaaaa
i macNem1.NW_012012100v1   C 0 I 48
s chlSab2.chr17            29898881 49 -  71996105 GTTTCTTATGTTTTTTAATTCCCCTTGAAAA---TCTCTTGTGACaaaaaaa
i chlSab2.chr17            I 4 I 75
s calJac3.chr4             30776924 52 + 171630274 GTTTCTTATGTTTTTTAATTTCCCTTGAAAATCTTCTCTTGTGACAAAAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            53322 52 -    750284 GTTTCTTATGTTTTTAAATTCCCCTTGAAAATCTTCTCTTGTGCCAAAAAAA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1304528 52 -   1771730 GTTTCTTATGTTTTTCAATTCCCCTTGAAAATCTTCTCTTGTGACAAAAAAA
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425  0 -   1829203 C
e manLeu1.NW_012106264v1      59129  0 +    779361 C
e cerAty1.NW_012002513v1      26142  0 -    811324 C

a score=51203.000000
s hg38.chr6_GL000254v2_alt  1854095 20 +   4827813 -G------ACCCTTGGGTGTACAGAGA
s panTro5.chr6             30699693 20 + 175400573 -G------ACCCTTGGGTGTACAGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31123246 20 + 173848474 -G------ACCCTTGGGTGTACAGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     630279 20 +   2037526 -G------ACCCTTGGGTGTACAGAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75305812 20 + 122973662 -G------ACCCTTGGGTGTACAGAGA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30407749 20 - 170955103 -a------GTCTCTGGATATACAGAAA
i macFas5.chr4             I 12 I 8
s calJac3.chr4             30776976 27 + 171630274 AAAAAAACACCTCTGGGTATACAGAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            53374 21 -    750284 AG------ACCTTTGGGTGTACAGAGA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1304580 21 -   1771730 AG------ACCTTTGGGTGTACAGAGA
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425  0 -   1829203 C
e manLeu1.NW_012106264v1      59129  0 +    779361 C
e chlSab2.chr17            29898930 75 -  71996105 I
e cerAty1.NW_012002513v1      26142  0 -    811324 C
e macNem1.NW_012012100v1     662350 48 +   1495729 I
e rheMac8.chr4             31115676 39 + 172585720 I

a score=155693.000000
s hg38.chr6_GL000254v2_alt  1854115 46 +   4827813 ATAGGTTTTGTCATAACTGTAACT---AATGTGAGCTTCCACTAAAAAC
s panTro5.chr6             30699713 46 + 175400573 ATAGGTTTTGTCATAATTGTAACT---AATGTGAGCTTCCACTAAAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31123266 46 + 173848474 ATAGGTTTTGTCATAATTGTAACT---AATGTGAGCTTCCACTAAAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     630299 46 +   2037526 ATAGGTTTTGTCATAACTGTAACT---AATGTGAGCTTCCACTAAAAAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75305832 46 + 122973662 ATAGGTTTTGTCATAACTGTAACT---AATGTGAGCTTCCACTAAAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31115715 35 + 172585720 ATAGGTTGTGCCATAACTGTAACT---AATGTGAACTT-----------
i rheMac8.chr4             I 39 C 0
s macFas5.chr4             30407777 35 - 170955103 ATAGGTTGTGCCATAACTGGAACT---AATGTGAACTT-----------
i macFas5.chr4             I 8 C 0
s macNem1.NW_012012100v1     662398 35 +   1495729 ATAGGTTGTGCCATAACTGTAACT---AATGTGAACTT-----------
i macNem1.NW_012012100v1   I 48 C 0
s calJac3.chr4             30777003 49 + 171630274 ATAGATTGTGTCATAACTGTAACTTCCAACGTGTACTTCCACTACATAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            53395 46 -    750284 ATAAGTTTTGTCATAACTGTAACT---AATGTGAACTTCCACTAAAAAC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1304601 46 -   1771730 ATAAATTTTGTCATGACTATAACT---AATGTGAACTTCCACTAAAAAC
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425  0 -   1829203 C
e manLeu1.NW_012106264v1      59129  0 +    779361 C
e chlSab2.chr17            29898930 75 -  71996105 I
e cerAty1.NW_012002513v1      26142  0 -    811324 C

a score=445999.000000
s hg38.chr6_GL000254v2_alt  1854161 80 +   4827813 CCAAGATACAAATATATTCACAACTTTATTTTTCCAGTGATCCATTCTAATACCTCTTGGGGCTTCCTGTGAAATGTCTA
s panTro5.chr6             30699759 80 + 175400573 CCAAGATACAAATATATTCACAACTTTATTTTTCCAGTGATCCATTCTAATACCTCTTGAGGCTTCCTGTGAAATGTCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31123312 80 + 173848474 CCAAGATACAAATATATTCACAACTTTATTTTTCCAGTGATCCATTCTAATAcctcttgaggcttcctgtgaaatgtcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     630345 80 +   2037526 CCAAGATACAAATATATTCACAACTTTATTTTTCCAGTGATCCATTCTAATAcctcttgaggcttcctgtgaaatgtcta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75305878 80 + 122973662 CCAAGATACAAACATATTCACAACTTTATTTTTCCAGTGATCCATTCTAATACCTCTTGAGGCTTCCTGTGAAATGTCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31115750 80 + 172585720 CCAAGATACAAATGTATTCACAACTTTATTTTTCCAGTGATTCATTCTAATGcctcttgaggcttcctgtgaaatgtcta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30407812 80 - 170955103 CCAAGATACAAATGTATTCACAACTTTATTTTTTCAGTGATTCATTCTAATGCCTCTTGAGGCTTCCTGTGAAATGTCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     662433 80 +   1495729 CCACGATACAAATGTATTCACAACTTTATTTTTTCAGTGATTCATTCTAATGcctcttgaggcttcctgtgaaatgtcta
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29899005 80 -  71996105 CCAAGATACAAATGTATTCACAACTTTATTTTTCCAGTGATTCATTCTAATGCCTCTTGAGGCTTCCTGTGAAATGTCTA
i chlSab2.chr17            I 75 C 0
s calJac3.chr4             30777052 80 + 171630274 CCAAGATACAAATACATTCACAACTTTATTTTTCCAGTGATCCATTCTAATGCCTCTTGAGGCTTCCAGTGAAATGTCTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            53441 79 -    750284 CCAAGATGCAAATATATTCACAACTTTATTTTTCCAGTGATTCATTCTAATGCC-CTTGAGGCTTCCCCTGAAATGTCCA
i saiBol1.JH378327         C 0 I 482
s cebCap1.NW_016107755v1    1304647 77 -   1771730 CCAAGATACAAATATATTCACG--TTTATTTTTCCAGTGATTCATTCTAATGCC-CTTGAGGCTTCCTGTGAAATGTCCA
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425  0 -   1829203 C
e manLeu1.NW_012106264v1      59129  0 +    779361 C
e cerAty1.NW_012002513v1      26142  0 -    811324 C

a score=38412.000000
s hg38.chr6_GL000254v2_alt  1854241 6 +   4827813 AGCACC
s panTro5.chr6             30699839 6 + 175400573 AGCACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31123392 6 + 173848474 agcacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     630425 6 +   2037526 agcacc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75305958 6 + 122973662 AGCACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31115830 6 + 172585720 agcacc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30407892 6 - 170955103 AGCACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     662513 6 +   1495729 agcacc
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29899085 6 -  71996105 AGCACC
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30777132 6 + 171630274 AGCACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            54002 6 -    750284 aGCACC
i saiBol1.JH378327         I 482 C 0
s cebCap1.NW_016107755v1    1304724 6 -   1771730 AGCACC
i cebCap1.NW_016107755v1   C 0 I 484
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425 0 -   1829203 C
e manLeu1.NW_012106264v1      59129 0 +    779361 C
e cerAty1.NW_012002513v1      26142 0 -    811324 C

a score=7278.000000
s hg38.chr6_GL000254v2_alt  1854247 2 +   4827813 CC
s panTro5.chr6             30699845 2 + 175400573 CC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31123398 2 + 173848474 cc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     630431 2 +   2037526 cc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75305964 2 + 122973662 CC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31115836 2 + 172585720 ct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30407898 2 - 170955103 CT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     662519 2 +   1495729 ct
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            29899091 2 -  71996105 CT
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30777138 2 + 171630274 CC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            54008 2 -    750284 CC
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e cebCap1.NW_016107755v1    1304730 484 -   1771730 I
e colAng1.NW_012115577v1     716425 0 -   1829203 C
e manLeu1.NW_012106264v1      59129 0 +    779361 C
e cerAty1.NW_012002513v1      26142 0 -    811324 C

a score=1603403.000000
s hg38.chr6_GL000254v2_alt  1854249 312 +   4827813 ACAGCCAAAGGGTACACTCGTAGTCCCCTTCAGTGCTAAGAAC--------AGAAAAGAAgctgttgcttttctctgctataggtgttgctgttgaaaattcatcccacacaattgatggagataa-ttttcactgctttagtcacctaaacaggccttgctgatccacattcctgttcagattactaggattctctaagggagggatgattgttgaagctgagtgatggaaacactttgctattctttctaattttttataaattttaagttttcaataataaaaagtt-aaaaaCCAAAAATTAAAAGAATCTGACAggc
s panTro5.chr6             30699847 312 + 175400573 ACAGCCAAAGGGTACACTCGTAGTCCCCTTCAGTGCTAAGAAC--------AGAAAAGAAgctgttgcttttctctgctataggtgttgctgttgaaaattcatcccacacaattgatggagataa-ttttcactgctttagtcacctaaacaggccttgctgatccacattcctgttcagATTACTAGGATTCTCTAAGGGAGGgatgattgttgaagctgagtgatggaaacactttgctattctttctaattttttataaattttaagttttcaataataaaaagtt-aaaaaCCAAAAATTAAAAGAATCTGACAggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31123400 312 + 173848474 acagccaaagggtacactcgtagtccccttcagtgctaagaac--------agaaaagaagctgttgcttttctctgctataggtgttgctgttgaaaattcatcccacacaattgatggagataa-ttttcactgctttagtcacctaaacaggccttgctgatccacattcctgttcagattactaggattctctaagggagggatgattgttgaagctgagtgatggaaacactttgctattctttctaattttttataaattttaagttttcaataataaaaagtt-aaaaaCCAAAAATTAAAAGAATCTGACAggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     630433 312 +   2037526 acagccaaagggtacactcgtagtccccttcagtgctaagaac--------agaaaagaagctgttgcttttctccgctataggtgttgctgttgaaaattcatcccacacaattgatggagataa-ttttcactgctttagtcacctaaacaggccttgctgatccacattcctgttcagattactaggattctctaagggagggatgattgttgaagctgagtgatggaaacactttgctattctttctaattttttataaattttaagttttcaataataaaaagtt-aaaaaCCAAAAATTAAAAGAATCTGACAggc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75305966 311 + 122973662 A-AGCCAAAGGGTACACTCGTAGTCCCCTTCAGTGCTAAGAAC--------GGAAAAGAAgctgttgcttttctctgctataggtgttgctgttgaaaattcatcccacacaattgatggagataa-ttttcactgctttagtcacctaaacaggccttgctgatccacattcctgttcagATTACTAGGATTCTCTAAGGGAGGgatgactgttgaagctgaatgatggaaacactttgctatcctttctaattttttataaattttaagttttcaataataaaaagtt-aaaaaCCGAAAATTAAAAGAATCTGACTggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31115838 318 + 172585720 acagccaaaggggatactcacagtctccttcagtcctaagaaccgaaaagaagaaaggaagctgttgcccttctctgctataggtgttgctgttgaaaactcatcccacacaactgatgttgataatttttcactgccttagtcacctaaaaaggccttgctgatccacattcctgtccagattactacgattctctaaggaagggacgattgttgcaactgagtgatggaaacactttgctattctttctaa-tttttat--gtttaaagttttccataataagaagtt-aaaaaCCAAAAATTGAAAGAATCTGACAggc
i rheMac8.chr4             C 0 N 0
s macFas5.chr4             30407900 319 - 170955103 ACAGCCAAAGGGGATACTCACAGTCTCCTTCAGTCCTAAGAACCGAAAAGAAGAAAGGAAGCTGTTGCCCTTCTCTGCTATAGGTGTTGCTGTTGAAAACTCATCCCACACAACTGATGTTGATAATTTTTCACTGCCTTAGTCACCTAAAAAGGCCTTGCTGATCCACATTCCTGTCCAGATTACTACGATTCTCTAAGGAAGGgacgattgttgcaactgagtgatggaaacactttgctattctttctaattttttat--gtttaaagttttccataataaaaagtt-aaaaaCCAAAAATTGAAAGAATCTGACAggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     662521 319 +   1495729 acagccaaaggggatactcacagtctccttcagtcctaagaaccgaaaagaagaaaggaagctgttgcccttctctgctataggtgttgctgttgaaaactcatcccacacaactgatgttgataatttttcactgccttagtcacctaaaaaggccttgctgatccacattcctgtccagattactacgattctctaaggaagggacgattgttgcaactgagtgatggaaacactttgctattctttctaattttttat--gtttaaagttttccataataaaaagtt-aaaaaCCAAAAATTGAAAGAATCTAACAggc
i macNem1.NW_012012100v1   C 0 N 0
s chlSab2.chr17            29899093 319 -  71996105 ACAGCCAAAGGCGATACTCACAGTCTTCTTTAGTCCTAAGAACCGAAAAGAAGAAAGGAAGCTGTTGCCCTTCTCTGCTATAGGTGTTGCTGTTGAAAACTCATCCCACACAACTGATGTTGATAATTTTTCACTGCCTTAGTCACCTAAAAAGGCCTTGCTGATCCACATTCCTGTCCAGCTTACTACGATTCTCTAAGGGAGGgacgattgttgcaactgagtgatggaaacactttgctattctttctaattttttat--gtttaaagttttccataataaaaagtt-aaaaaCCAAAAATTGAAAGAATCTGACAggc
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30777140 310 + 171630274 ACCGCCAAAGGGGATACTCATAATCTCCATCAGT-CTAAGGAC--------GGAAAAGAAgctgttgcccttctctgctacaggtgttgctgttgaaaactcatcccacacaattgatggagttgattttttattgccttagtcatctaaacaggccttggtgattcacattccggtctagattactaggattctctaagggacagatgaCtattgaagctgagtgatggaaacactttgctattctttctaattttttct--gtttgaagttttccacaataaaaagtt-aaaaaccaaAACTTAAAACTATCTAACAggc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            54010 312 -    750284 ACAGACAAAGGGTACACTCGGAGTCCCCTTCAGTCCTAAGAAT--------GGAAAAGAAgctgttgctcttctctgctgtaggtgttgctgttgataacttgtcccacacaattgatggagatgatttttcactgccttagtcatctaaacaggccttgctgatccacatttctgttcagattactaggattctctaagggaggGAGGattgttgaagctgagtgatggaaatactttgctattctttctaattttataa--attttaagttttccataataaaaagttaaaaaaCTGAAACTTGGAAGAATCTGACAggc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1305214 308 -   1771730 ACAGCCAAAGGGTACACTTGGAGTCCCCTTCAGTCCTAAGAAT--------GGAAAAGAAgctgttgctcttctctgctgtaggtgttgttgttgAAAACTTGTCCCACACAATTGATGGAGATGATTTTTCACTGCCTTAGTCATCTAAACAGGccttgctgatccatatttctgctcagattactaggattctctaagggagggatgattgttgaagctgagtgatggaaatactttgctattctttctaattttgtaa--attttaagttttccataataaaaagttaaaaaaCTGAAA----GAAGAATCTGACAggc
i cebCap1.NW_016107755v1   I 484 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e cerAty1.NW_012002513v1      26142   0 -    811324 C

a score=172346.000000
s hg38.chr6_GL000254v2_alt  1854561 52 +   4827813 cagatatggtggttcacgcctgtaatactagcactttgggaggctgaggcag
s panTro5.chr6             30700159 52 + 175400573 cagatatggtggttcacgcctgtaatactagcactttgggaggctgaggcag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31123712 52 + 173848474 cagatatggtggttcacgcctgtaatactagcactttgggaggctgaggcag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     630745 52 +   2037526 cagatatggtggttcacgcctgtaatactagcactttgggaggctgaggcag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75306277 52 + 122973662 cagatatggtggttcacgcctgtaatactagcactttgggaggctcaggcag
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30408219 52 - 170955103 tgggcacagtggctcacgtctataattcccgcattttgggaggccaaggcag
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            29899412 52 -  71996105 tgggcacagtggctcacgtctataattccagcattttgggaggccaaggcag
i chlSab2.chr17            C 0 N 0
s calJac3.chr4             30777450 52 + 171630274 tgggcacggtggctcatgtctgtaatcccagcactttgggaggccgtggcac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            54322 52 -    750284 caggtatggtggctcacacctgtaatactagcactttgggaggctgaggcag
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1305522 52 -   1771730 cgggtatggtggctcacacctgtgatactagcactttgggaggctgacgcag
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425  0 -   1829203 C
e manLeu1.NW_012106264v1      59129  0 +    779361 C
e cerAty1.NW_012002513v1      26142  0 -    811324 C

a score=159877.000000
s hg38.chr6_GL000254v2_alt  1854613 67 +   4827813 gaggatcgcttgaggccaggatttcgaggctagcctgggcaacatagtgagacactatctctacac-a
s panTro5.chr6             30700211 67 + 175400573 gaggatcgcttgaggccaggatttcgaggctagcctgggcaacatagtgagacactatctctacac-a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31123764 67 + 173848474 gaggatcgcttgaggccaggatttcaaggctagcctgggcaacatagtgagacactatctctacac-a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     630797 67 +   2037526 gaggatcgcttgaggccaggatttcgaagctagcctgggcaacatagtgagacactatctctacac-a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75306329 67 + 122973662 gaggattgcttgaggccgggatgtcgaggctagcctgggcaacatagtgagacactatctctacac-g
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30408271 67 - 170955103 atagatcacttgagccctggcattcaagacgagcctgggcaacatggagaaaccccatcttcacaa-a
i macFas5.chr4             C 0 C 0
s calJac3.chr4             30777502 67 + 171630274 atagatccctcaagccctggcgttcaaggccaccctgggcaacatggagaaaccccatctccacaca-
i calJac3.chr4             C 0 N 0
s saiBol1.JH378327            54374 66 -    750284 gaggatcgcttgaggccaggatttcaagaccagcctgggcaacataatgagacactatctctacac--
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1305574 66 -   1771730 gaggatcacttgaggccaggatttcaagaccaacctgggcaacataatgagacactatctctacac--
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425  0 -   1829203 C
e manLeu1.NW_012106264v1      59129  0 +    779361 C
e cerAty1.NW_012002513v1      26142  0 -    811324 C

a score=25537.000000
s hg38.chr6_GL000254v2_alt  1854680 13 +   4827813 aaaAAAATTTAAA
s panTro5.chr6             30700278 13 + 175400573 aaaAAAATTTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31123831 13 + 173848474 aaaAAAATTTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     630864 13 +   2037526 aaaAAAATTTAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75306396 13 + 122973662 aaaaaaaTTTAAA
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30408338 13 - 170955103 aaactaatacaaa
i macFas5.chr4             C 0 I 99750
s saiBol1.JH378327            54440 13 -    750284 aaaaAAATTTAAG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1305640 12 -   1771730 -aaaaAATTTAAG
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425  0 -   1829203 C
e manLeu1.NW_012106264v1      59129  0 +    779361 C
e cerAty1.NW_012002513v1      26142  0 -    811324 C

a score=355716.000000
s hg38.chr6_GL000254v2_alt  1854693 206 +   4827813 TTGAAAACAAAACGGCATTCCggctccttggagaaacggtcgattctaggactggggcatcctatgatgtcagaaagtatttacatgctcgattaaaaggtgagaaccatatcaaagggacacaggagccaactggaaataattccaatagttaaaatggaaacaatttgagcaacaaaataagtaataatggaattggattataa
s panTro5.chr6             30700291 206 + 175400573 TTGAAAACAAAACAACATTCTggctccttggagaaatggtcgattctaggactggggcatcctatgatgtcagaaagtatttacgtgctcaattaaaaggtgagaaccatatcaaagggacacaggagccaactggaaagaattccaatagttaaagtggaaacaatttgagcaacaaaataagtaataatggaattggattataa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31123844 206 + 173848474 TTGAAAACAAAACAACATTCTggctccttggagaaatggtcgattgtaggactggggcatcctatgatgtcagaaagtatttacgtgctcaattaaaaggtgagaaccatatcaaagggacacaggagccaactggaaagaattccaatagttaaagtggaaacaatttgagcaacaaaataagtaataatggaattggattataa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     630877 206 +   2037526 TTGAAAACAAAACAACATTCTggctctctggagaaattgtcgattctaggactggggcatcctatgatgtcagaaagtatttacgtgctcaattaaaaggtgagaaccatatcaaagggacacaggagccaactggaaagaattccaatagttaaagtggaaacaatttgagcaacaaaataagtaataatggaattggattataa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75306409 206 + 122973662 CTGAAAACAAAACAACATTCTggctccttggagaaatggttgattccaggactggggcatcctatgatgtcaggaagtatttacgtgctcaattaaaaggtgagaaccatatcaaagggacacaggagccaactggaaagaattccaatggttaaagtggaaacaatttgagcaacaaaataagtaataatggaattggattataa
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378327            54453 202 -    750284 TTGAAAACAAAACAACATTCTggctccttggagaaatggttgattccagggctggggcatcttgtgatgtcagaaagtatttaggtgctcaataaaaaggtgagaaccatgtcaaatggacacatgatccaactggaaagaattccagtggttaaaggggaaacaatttgaacaacaaaataaataataatggaattggatt----
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1305652 204 -   1771730 CTGAAAACAACACAACATTCTggctccttggagaaatggttggttccaggact--ggcatcttgtgatgtcagaaagtatttaggtgctcaataaaaaggtgagaaccatgtcagagggacacataatccaactggaaagaattccagtggttaaaggggaaacaatgtgaacaacaaaataaatagtaatggaattggattataa
i cebCap1.NW_016107755v1   C 0 I 3998
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e cerAty1.NW_012002513v1      26142   0 -    811324 C
e macFas5.chr4             30408351 99750 - 170955103 I

a score=209713.000000
s hg38.chr6_GL000254v2_alt  1854899 177 +   4827813 cccatagaataaaataagtatccattag----cccatattgataaaagaaattcttaaataaataaatgggaagatgtggcagtactttttcacagaagaattcattagcaaagcctaacggtgtggctagcctgcgtcatgacaatggttgggagaagcagcaaaatagcagactagcca
s panTro5.chr6             30700497 177 + 175400573 cccatagaataaaataagtatccattag----cccatattgataaaagaaattattaaataaataaatgggaagatgtggcagtcctttttcacagaagaattcattagcaaagcctaacggtgtggctagcctgcgtcatgacaatggttgggagaagcagcaaaatagcagactagcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31124050 177 + 173848474 cccatagaataaaataagtatccattag----cccatattgataaaagaaattattaaataaataaatgggaagatgtggcagtcctttttcacagaagaattcattagcaaagcctaacggtgtggctagcctgcgtcatgacaatggttgggagaagcagcaaaatagcagactagcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     631083 177 +   2037526 cccatagaataaaataagtatccattag----cccatattgataaaagaaattcttaaataaataaatgggaagatgtggcagtcctctttcacagaagaattcattagcaaagcctaacggtgtggctagcctgcgtcatgacaatggttgggagaagcagcaaaatagcagactagcca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75306615 177 + 122973662 cccatataataaaataagtatccattag----cccatattgataaaagaaattcttaaataaataaatgggaagatgtggcagtcctttttcacaaaagaattcattagcaaagcctaacggtgtggctagcctgagtcatgataatggtcgggagaagcagcaaaacagcagactagcca
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378327            54655 161 -    750284 --------ataaaataagtatctattagatacctaatattgataaaagaaattct----taaataaatgttaagatgtggcagccctttttcacaaaagaattcATTGGCAAAGCCTAA-----GGGCTAGCCTAAGTCGTCATGATGGTCAGGAGAAGCAGCAAAA---CAGACTAGCCA
i saiBol1.JH378327         C 0 I 5051
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e cebCap1.NW_016107755v1    1305856 3998 -   1771730 I
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e cerAty1.NW_012002513v1      26142   0 -    811324 C
e macFas5.chr4             30408351 99750 - 170955103 I

a score=1090268.000000
s hg38.chr6_GL000254v2_alt  1855076 1222 +   4827813 gaaatttaaaagggaaatcaaaggaacaaaacagacaaagaatgccttagtaaaataccatttaactttggtagtttaaaaagctatgtgcagcacacagggttataactgcttagaagagagacttgagaaggctataggaagctactcctccctgcaactaaatatgaggtctcagaaataaagagaaagccatggctcacttgtaaactctctgaactttgaaagtaccctccaaatcacacacagctccaacagcagggttagaagccttactggcttaaggcatttaagcacaaactc-taacagatcactggctgaccattaagctatgctgatccaggggcaacccctaagaattcaggcttaaaaataaaaataagaattaaaaaaGGAcgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccgagatcacgccgttgcactctagcctgggcaacaagagtgaagctctgtctcaaaaacaaaaaGGAACCTGAGCagaaatatctgagcagaaatatctgaagcctcatactgcatactgcaagggaaaaggactccactgaattagtacaggcaagtcactaTaaaaatatctgaaccctcatactgcaagggaaagggactccacagaattagtacaggcaagtcactataaaaacaaacaaaacaacaaccaccttcacccccaagagaaagaaattggaatccagagctagcatatattgtctaaaattttcagttttccaaaaaagttacaaaagggcaaagaaataggaaaatgcaatccatttgcagggagaaacagtcaatagaaattgtcggccaggcacggtggctcatgcctgtaatccctgcactttgggaggctgaggtgtgtggatcatttgaggtcaggagttcgagaccagcctggccaacatggtgaaatctgtctc-aataaaaatacaaaaattagctgggcatggtgatgcacacctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaaccacggagtcagaggttgcaatgagctaatatcatgccactatactccagccctggaaatggagtgagactctgtct-caaaaaaaaaaaaaaaaaTTgattcacacctaaacattaatatattatactgaaactattaccagccaaaaatagaaatgacatcttaaaag
s panTro5.chr6             30700674 1216 + 175400573 gaaatttaaaagggaaatcaaaggaacaaaacagacaaagaatgccttggtaaaataccatttaactttggtagtttaaaaagctatgtgcagcacacagggttataactgcttagaagagagactcgagaaggctataggaagctactcctccctgcaactaaatatgaggtctcagaaataaagagaaagccatggctcacttgtaaactctctgaactttgaaagtaccctccaaatcacacacagctccaacagcaaggttagaagccttactggcttaaggcatttaagcacaaactc-taacagatcactggctgaccattaagctatgctgatccaggggcaacccctaagaattcaggcttaaaaataaaaataagaattaaaaaaggacGgg---ctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccgagatcacgccgttgcactctagcctgggcaacaagagtgaagctctgtctcaaaaacaaaaaGGAACCTGAGCagaaatatctgagcagaaatatctgaagcctcatactgcatactgcaagggaaaaggactccactgaattagtacaggcaagtcactaTaaaaatatctgaaccctcatactgcaagggaaagggactccacagaattagtacaggcgagtcactataaaaacaaacaaaacaacaaccaccttcacccccaagagaaagaaattggaatccagagctagcatatattgtctaaaattttcagttttccgaaaaagttacaaaagggcaaagcaataggaaaatgcaatccatttgcagggagaaacagtcaatagaaattgtcggccaggcacggtggctcatgcctgtaatccctgcactttgggaggctgaggtgtgtggatcatttgaggtcaggagttcgagaccagcctggccaacatggtgaaatctgtctc-aataaaaatacaaaaattagctgggcatggtgatgcacacctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaaccagggagtcagaggttgcaatgagctaatatcgtgccactatactccagccctggaaatggagtgagactctgtct-caaaaaaaaaaaaaa---TTgattcgcacctaaatattaatatattatactgaaactattaccagccaaaaatagaaataacatcttaaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31124227 1217 + 173848474 gaaatttaaaagggaaatcaaaggaacaaaacagacaaagaatgccttggtaaaataccatttaactttggtagtttaaaaagctatgtgcagcacacagggttataactgcttagaagagagactcgagaaggctataggaagctactcctccctgcaactaaatatgaggtctcagaaataaagagaaagccatggctcacttgtaaactctctgaactttgaaagtaccctccaaatcacacacagctccaacagcaaggttagaagccttactggcttaaggcatttaagcacaaactc-taacagatcactggctgaccattaagctatgctgatccaggggcaacccctaagaattcaggcttaaaaataaaaataagaattaaaaaaggacGgg---ctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccgagatcacgccgttgcactctagcctgggcaacaagagtgaagctctgtctcaaaaacaaaaaGGAACCTGAGCagaaatatctgagcagaaatatctgaagcctcatactgcatactgcaagggaaaaggactccactgaattagtacaggcaagtcactataaaaatatctgaaccctcatactgcaagggaaagggactccacagaattagtacaggcgagtcactataaaaacaaacaaaacaacaaccaccttcacccccaagagaaagaaattggaatccagagctagcatatattgtctaaaattttcagttttccaaaaaagttacaaaagggcaaagcaataggaaaatgcaatccatttgcagggagaaacagtcaatagaaattgtcggccaggcacggtggctcatgcctgtaatccctgcactttgggaggctgaggtgtgtggatcatttgaggtcaggagttcgagaccagcctggccaacatggtgaaatctgtctc-aataaaaatacaaaaattagctgggcatggtgatgcacacctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaaccagggagtcagaggttgcaatgagctaatatcgtgccactatactccagccctggaaatggagtgagactctgtctacaaaaaaaaaaaaaa---TTgattcgcacctaaatattaatatattatactgaaactattaccagccaaaaatagaaataacatcttaaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     631260 1218 +   2037526 gaaatttaaaagggaaatcaaaggaacaaaacagacaaagaatgccttggtaaaataccatttaactttggtagtttaaaaagctatgtgcagcacacagggttataactgcttagaagagagactcgagaaggctataggaagctactcctccctgcaactaaatatgaggtctcagaaataaagagaaagccatggctcacttgtaaactctctgaactttgaaagtaccctccaaatcacacacagctccaacagcaaggttagaagccttactggcttaaggcatttaagcacaaactcttaacagatcactggctgaccattaagctatgctgatccaggggcaacccctaagaattcaggcttaaaaataaaaatacgaattaaaaaaGGAcgggaggttgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccgagatcgcgctgttgcactctagcctgggcaacaagagtgaagctctgtctcaaaaaaaaaaaGGAACCTGAGCagaaatatctgagcagaaatatctgaagcctcatactgcatactgcaagggaaaaggactccactgaattagtacaggcaagtcactaTaaaaatatctgaaccctcatactgcaagggaaagggactccacagaattagtacaggcaagtcactataaaaacaaacaaaacaacaaccaccttcacccccaagagaaagaaattggaatccagagctagcatatattgtctaaaattttcagttttccaaaaaagttacaaaagggcaaagaaataggaaaatgcaatccatttgcaaggagaaacagtcaatagaaattgtcggccaggcacggtggctcatgcctgtaatccctgcactttgggaggctgaggtgtgtggatcatttgaggtcaggagttcgagaccagcctggccaacatggtgaaatctgtctc-aataaaaatacaaaaattagctgggcatggtgatgcacatctgtaatctcagctactcgggaggctgaggcaggagaattgcttgaaccagggagtcagaggttgcaatgagctaagatcatgccactatactccagccctggaaattgagtgagactctgtct-caaaaaaaaaaaa-----TTgattcgcacctaaatattaacatattatactgaaactattaccagccaaaaatagaaataacatcttaaaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75306792 1211 + 122973662 gaaatttaaaagggaaatcaaaggaacaaaacagacaaagaatgccttggcaaaataccatttaactttggtagtttaaaaagctatgtgca-cgcacagggttataactgcttagaagagagacttgagaaggctataggaagctactcgtccctgcaactaaatatgaggtctcacaaataaagagaaggccatggctcacttgtaaactctctgaactttgaaagtaccctccaaatcacacacagctccaacaacaaggttagaagccttactggcttaaggcatttaagcacaaactc-taacacatcactggctgaccattaagctatgctgattcaggggcaacccctaagaattcaggcttaaaaataaaaataagaattaaaaaaGGAcgggaggctgaggcaggagaatcgctggaacccaggaggcagcggttgcagtgagccgagatcgcgccgttgcactctagccagggcaacaagagtgaagctctgtctccaaaaaaaaaaaaaa-------aaaGGaacctgagcagaaatatccgaagcctcatactgcatactgcaagggaaaaggactccactgaattagtacaggcaagtcactgtaaaaatatctgaagcctcatactgcaagggaaagggactccacagaattagtacaggcaagtcactataaaaacaaacaaaacaaccaccaccttcacccccaagagaaagaaatgggaatccagagctagcatatattgtctaaaattttcagttttccaaaaaatttagaaaagggcaaagaaataggaaaatgcaatccatttgcagggagaaacagtcaatagaaattgtcAgccaggcacggtggctcatgcctgtaatccctgcactttgggaggctgaagtatgtagatcatttgaggtcaggagttcaagaccagcctggccaacatggtgaaacctgtctctaataaaaacacaaaaattagctgggcatggtgataaacgcctgtaatcccaggtactcgggaggctgaggcaggagaattgcttgaaccagggagtcagaggttgcagtgagctaagatcatgccactatactccagccttggaaatggagtgagactctgtct-caaaaaaaaaaaaa----TTgattcacacctaaatattaatatattatactcaaactattaccaaccaaaaatagaaataacatcttaaaag
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            54816 5051 -    750284 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e cebCap1.NW_016107755v1    1305856 3998 -   1771730 I
e colAng1.NW_012115577v1     716425    0 -   1829203 C
e manLeu1.NW_012106264v1      59129    0 +    779361 C
e cerAty1.NW_012002513v1      26142    0 -    811324 C
e macFas5.chr4             30408351 99750 - 170955103 I

a score=215629.000000
s hg38.chr6_GL000254v2_alt  1856298 181 +   4827813 caatgagaaaaaactcatctc--atacaaatacactcatacacacagacacaataatcttaatagctaac--ctcatcagtaacaatggaggttagaaggctgtaacatgggctgggtgccgtggctcatgtctataatcccagcactttgagaggctgaggcaggcagatcacgaggtcaagag
s panTro5.chr6             30701890 183 + 175400573 caatgagaaaaaactcatctc--atacaaatacactcatacacacagacacaataatcttaatagctatcttctcatcagtaacaatggaggttagaaggctgtaacatgggctgggtgccgtggctcatgcctataatcccagcactttgggaggccgaggcaggcagatcacgaagtcaagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31125444 183 + 173848474 caatgagaaaaaactcatctc--atacaaatacactcatacacacagacacaataatcttaatagctaacttctcatcagtaacaatggaggttagaaggctgtaacatgggctgggtgccgtggctcatgcctataatcccagcactttgggaggccgaggcaggcagatcacgaagtcaagag
i panPan2.chr6             C 0 M 112
s gorGor5.CYUI01015528v1     632478 183 +   2037526 caatgagaaaaaactcatctc--atacaaatacactcatacacacagacacaataatcttaatagctaacttctcatcagtaacaatggaggttagaaggctgtaacatgggctgggtgccgtggctcatgcctataatcccagcactttgggaggccgaggcaggcagatcacgaggtcaagag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75308003 183 + 122973662 caatgagaaaaaactcatctc--atacaaatacgctcatacacacagacacaataatcttaatagctaacttctcatcagtaacaatggaggttagaaggctgtaacatgggctgtgtgccgtggctcatgcctgtaatcccagcactttgggaggccaaggcaggcagatcaccaggtcaagag
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30890029 179 + 171630274 caatatggtgaaacctgtctctaataaaaatata-----acaattag-cAcaataatcttaatagctaacttctcattagtaacaaggaatgttagaaggcagtaacatgggccaggcactgtggctcatgcctgtaattccagcactttaggaggctgagacaggtggatcatgaggctaagag
i calJac3.chr4             N 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            54816 5051 -    750284 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e cebCap1.NW_016107755v1    1305856 3998 -   1771730 I
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e cerAty1.NW_012002513v1      26142   0 -    811324 C
e macFas5.chr4             30408351 99750 - 170955103 I

a score=28674.000000
s hg38.chr6_GL000254v2_alt  1856479 31 +   4827813 ttcaagaccagcctggccaacatggtgaaac
s panTro5.chr6             30702073 31 + 175400573 ttcaagaccagcctggccaacatggtgaaac
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     632661 31 +   2037526 ttcaagaccagcctggccaacatggtgaaac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75308186 31 + 122973662 ttcaagaccagcctggccaacatggtgaaac
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30890208 31 + 171630274 ttcaagaccagcctggccgacacggtgaaac
i calJac3.chr4             C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            54816 5051 -    750284 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e cebCap1.NW_016107755v1    1305856 3998 -   1771730 I
e colAng1.NW_012115577v1     716425  0 -   1829203 C
e manLeu1.NW_012106264v1      59129  0 +    779361 C
e cerAty1.NW_012002513v1      26142  0 -    811324 C
e macFas5.chr4             30408351 99750 - 170955103 I
e panPan2.chr6             31125627 112 + 173848474 M

a score=1161515.000000
s hg38.chr6_GL000254v2_alt  1856510 960 +   4827813 cccatctctactaagaatataaaaattagctgggtgtggtggtacatgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccgggaggcggaggc-gcagtgagccaagattgtgccactgcactccagcctgggcaacagagcaagactctgtctcaaaaaaaaaaaaaaattaaagaagacagtaacatatgcaaatttgggggttagtggggagaagctagcaatcaagaattttacatcaagaaaaattatccttcaaaactgaagaccggtac--agggacagtggtttgcacccataatcccagcactttgggaggccaaggtgggaggatcgcttgaacccaggagttcaagaccagcctgggcaacaaagtaagaccctgtctctgcaaaaaaaaaaaaaaaaaaaaaa--------tttagcca--tgtgtggtagtgcacacctgtagtcctagctactcaggaggctgaggcaggaggctctcttaggcccgagagattgaggttgcaatgagacatgatcatgccactacactccggcctgggcaacagagcgagaccctgtctccaaaaccaaaatttattctaaa--gaaaacaaaaagagaagccaacatgaacatattcttacataaacaaagactagggagatttatctcttgcagatatgtcttacaagaaacactaatgtaatactaaagtaagttcttcagactgagaagaaatgacaccagataataatcccaatccaatg-aaaaaCAATTATTGTATGTCAATTAAAGATAAAACTTGtagctaggcacagtggcgcacacctgtaatcccagctacttgggaggctgaggcacaagaatcacttgaacccagcaggtggagtctgcagtgagccaagatcacaccactgtagtccagcctgggcaacagagcaagactccatctcaaaaaTATTA
s panTro5.chr6             30702104 957 + 175400573 cccatctctactaagaatataaaaattagctgggtgtggtggtacatgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgcagtgagccaagattgtgccactgcactccagcctgggcaacagagcaagactctgtctcaaaaaaaaaaaaaaattaaagaagacagtaacatatgcaaatttgggggttagtggggagaagctagcaatcaagaattttacatcaagaaaaattatccttcaaaactgaagaccggtac--agggacagtggtttgcacccataatcccagcactttgggaggccaaggtgggaggatcgcttgaacccaggagttcaagaccagcctgggcaacaaagtaagaccctgtctctgcaaaaaaaaaaaaaaaaaaaaaa------aatttagcca--tgtgtggtagtgcacacctgtagtcctagctactcaggaggctgaggcaggaggctctcttaggcccgagagattgaggttgcaatgagacatgatcatgccactacactccggcctgg-caacagagcgagactctgtctccaaaaccaaaatttattctaaa--gaaaacaaaaagagaagccaacatgaacatattcttagataaacaaagactagggagatttatctcttgcagatatgtcttacaagaaacactaatgtaatactaa-----gttcttcagactgagaagaaatgacaccagataataatcccaatccaatg-aaaaaCAATTATTGTATGTCAATTAAAGATAAAACTTGtagctaggcacagtggcgcacacctgtaatcccagctacttgggaggctgaggcacaagaatcacttgaacccagcaggtggagtctgcagtgagccaagatcacaccactgtagtccagcccgggcaacagagcaagactccatctcaaaaaTATTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31125739 950 + 173848474 cccatctctactaagaatat-aaaattagctgggtgtggtggtacatgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccgggaggcggaggttgcagtgagccaagattgtgccactgcactccagcctgggcaacagagcaagactctgtctc--------aaaaaattaaaagaagacagtaacatatgcaaatttgggggttagtggggagtagctagcaatcaagaattttacatcaagaaaaattatccttcaaaactgaagaccggtac--agggacagtggtttgcacccataatcccagcactttgggaggccaaggtgggaggatcgcttgaacccaggagttcaagaccagcctgggcaacaaagtaagaccctgtctctgacaaaaaaaaaaaaaacaaaaaa------aattaanccaatagtgtggtagtgcacacctgtagtcctagctactcaggaggctgaggcaggaggctctcttaggcccgagagattgaggttgcaatgagacatgatcatgccactacactccggcctgg-caacagagcgagactctgtctccaaaaccaaaattgattctaaa--gaaaacaaaaagagaagccaacatgaacatattcttagataaacaaagactagggagatttatctcttgcagatatgtcttacaagaaacactaatgtaatactaa-----gttcttcagactgagaagaaatgacaccagataataatcccaatccaatg-aaaaaCAATTATTGTATGTCAATTAAAGATAAAACTTGtagctaggcacagtggcgcacacctgtaatcccagctacttgggaggctgaggcacaagaatcacttgaacccagcaggtggagtctgcagtgagccaagatcacaccactgtagtccagcccgggcaacagagcaagactccatctcaaaaaTATTA
i panPan2.chr6             M 112 C 0
s gorGor5.CYUI01015528v1     632692 964 +   2037526 cccatctctactaagaatataaaaattagctgggtgtggtggtacatgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccggaaggcggaggctgcagtgagccaagattgtgccactgcactccagcctgggcaacagagcaagactctgtctc-aaaaaaaaaaaaaattaaagaagacagtaacatatgcaaatttgggggttagtggggagaagctagcaatcaagaattctacatcaagaaaaattatccttcaaaa-tgaagaccggtac--agggacagtggtttgcacccataatcccagcactttgggaggccaaggtgggaggatcgcttgaacccaggagttcaagaccagcctgggcaacaaagtaagaccctgtctctgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatttagcca--tgtgtggtagtgcacacctgtagtcctagctactcaggaggctgaggcaagaggctctcttaggcccgagagattgaggttgcaatgagac---atcatgccactacactccggcctgggcaacagagcgagaccctgtctccaaaaccaaaatttattctaaa--gaaaacaaaaagagaagccaacatgaacatattcttagataaacaaagactagggagatttatctcttgcagatatgtcttacaagaaacactaatgtaatactaaagtaagttcttcagactgagaagaaatgacaccagataataatcccaatccaatg-aaaaaCAATTATTGTATGTCAATTAAAGATAAAACTTGtagctaggcacagtggcacacacctgtaatcccagctacttgggaggctgaggcacaagaatcacttgaacccagcaggtggagtctgcagtgagccaagatcacaccactgtagtccagcctgggcaacagagcaagactccatctcaaaaaTATTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75308217 951 + 122973662 cccatctctactaagaatataaaaattagctgggtgtggtggtacgtgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggcggaggctgcagtgagccaagattgtgccactgcactccagcctgggcaacagcgcaagactctgtctcaaaaaaaaaaaaaaa--aaagaaggcagtaacatatgcaaatttgggggttagtggggagaagctagcaatcaagaattttacatcaagaaaaattatccttcaaaactgaagacctgtcc--agggacagtggtttgcacctataatcccagcactttgggaggccaaggtgggaggattgcttgaacccaggagttcaagaccagcctgggcaacaaagtaagaccctgtctctg----------aaaaaaaaaaaaa------aatttagcca--tgtgtggtagtgcacacctgtagtcctagctactcaggaagctgaggcaggaggatctcttaggcccgagagattgaggttgcaatgagacatgatcatgccactacactccggcctgggcaacagagcgagaccctgtctccaaaaccaaaatttattctaaa--gaaaaaaaaaagagaagccaaaatgaacatattcttagataaacaaagactagggagatttatttcttgcagatatgtcttacaagaaacacgaatgtaatactaaagtaagttcttcagactaagaagaaatgacaccagataataatcccaatccaatg-aaaaaCAATTATTATATGTCAattaaaaataaaatttgtagctgggcacagaggtgcacacctgtaatcccagctacttgggaggctgaggcacaagaatcacttgaacccagcaggtagagtctgcagtgagccaagatcacaccactgtagtccagcctgggcaacagagcaagactccatctcaaaaaTATTA
i nomLeu3.chr1a            C 0 I 329
s calJac3.chr4             30890239 935 + 171630274 cccatctctactaacaatacaaaaatgagccaagcctggtggtatgtgcctgtaatcccagctactcaggaggctgaatcaggagaactgcttgaacccgggaggcagaggttgcaatgagcagagattgtgccactgtactccagcctgggcaacagagccagactccatcttggggaaaaaa-------aaagaaggcagtaacatatgcaaattttgggggtagtagggagaagctggcaacgaagaattctataccaagcaaaattatccttcaaaactcaagacaggtgcctaggcacagtggctcacacctataatcccaacaccttgggaggctgaggtgggaggattgcttgagccaaggagttcaacaccagcctgggcaacaaagtaagaccctgtctctac---------aaaaaaaaaaaaa------------gcca--tgtgtggtagtgcacacct-tagtcctagctactcagaaggctgaggcaggaggatctcttagccccaagagatcaaggttgcaatgagacatgatcatgccactgcacttagacctgggcaacagagcaagaccctgtctccaaaaacgaaatt-atttaaaattaataaaaaaaaaagaaggcaaaatgaacacattcttagataaacaaagactgaaaggatttatttcttgcagacatctcttacaagaaatactaaagtaattttta---aagttattcagactgagaagaaatgacaccag---ataattccaatccaatgaaaaaacaaTTATTATCTGTCAATTaaacataaaatttatagctgagcaaagtggtgcacacccgtaatctcagctacttgggaggctgaggcacaagaatcacttgaacccaagaggtggagt---cagctacctgcagtcataccactgcagtccagcctcggcaacagagcaagactccatctcaaaaacatta
i calJac3.chr4             C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            54816 5051 -    750284 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e cebCap1.NW_016107755v1    1305856 3998 -   1771730 I
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e cerAty1.NW_012002513v1      26142   0 -    811324 C
e macFas5.chr4             30408351 99750 - 170955103 I

a score=636298.000000
s hg38.chr6_GL000254v2_alt  1857470 521 +   4827813 CATT-AAAAAAAGTAAAATTTGTAAaagaaacaaacagcatcagaaaaaataatatgttggtaattattttttaaaaactaaaaactaaaaactacaaatctcttctttttctttttcttttttgagagacaaggtctcactctctcacccaggatggagtgcagtggtttgaccatcgctcactgcagcctcaaatcctggactcaagtgatcccctcacctcagcctcctcctgagtagctgggactacagatgcacaccgccatgcctggctccttttcatttcttaactgttttaaaagaaattacataaaacaacaattataaaattacagtgttgggtttgtaacatctaaagataatgtgtgtgtatatatgcactcacacacatatgacaataatggtacaaaggatagggaaaagatggagttacattgaaacaaaggaaccacatcagattgtaagtccaatccacaagaacaaatc------atcagaaacactaaataagtttcatacgaaaaact----
s panTro5.chr6             30703061 522 + 175400573 CATTTAAAAAAAGTAAAATTTGTAAaagaaacaaacagcatcagaaaaaataatatgttggtaattattttttaaaaactaaaaactaaaaactacaaatctcttctttttctttttcttttttgagagacaaggtctcacgctctcacccaggatggagtgcagtggtttgaccatcgctcactgcagcctcaaatcctggactcaagtgatcctctcacctcagcctcctcctgagtagctgggactacagatgcacactgccatgcctggctccttttcatttcttaactgttttaaaagaaattacataaaacaacaattataaaattacagtgttgggtttgtaacatctaaagataatgtgtgtgtatatatgcactcacacacatatgacaataatggtacaaaggatagggaaaagatagagttacattgaaacaaaggaaccacatcagattgtaagtccaatccacaagaacaaatc------atcagaaacactaaataagtttcatacgaaaaact----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31126689 522 + 173848474 CATTTAAAAAAAGTAAAATTTGTAAaagaaacaaacagcatcagaaaaaataatatgttggtaattattttttaaaaactaaaaactaaaaactacaaatctcttctttttctttttcttttttgagagacaaggtctcactctctcacccaggatggagtgcagtggtttgaccatcgctcactgcagcctcaaatcctggactcaagtgatcctctcacctcagcctcctcctgagtagctgggactacagatgcacactgccatgcctggctccttttcatttcttaactgttttaaaagaaattacataaaacaacaattataaaattacagtgttgggtttgtaacatctaaagataatgtgtgtgtatatatgcactcacacacatatgacaataatggtacaaaggatagggaaaagatagagttacattgaaacaaaggaaccacatcagattgtaagtccaatccacaagaacaaatc------atcagaaacactaaataagtttcatacgaaaaact----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     633656 521 +   2037526 CATT-AAAAAAAGTAAAATTTGTAAaagaaacaaacagcatcagaaaaaataatatgttggtaattattttttaaaaactaaaaactaaaaactacaaatctcttctttttctttttcttttttgggagacaaggtctcactctctcacccaggatggagtgcagtggtttgaccatcgctcactgcagcctcaaatcctggactcaagtgatcctctcacctcagcctcctcctgagtagctgggactacagatgcacactgccatgcctggctccttttcatttcttaactgttttaaaagaaattacataaaacaacaattataaaattacagtgttgggtttgtaacatctaaagataatgtgtgtgtatatatgcactcacacacatatgacaataatggtacaaaggatagggaaaagatggagttacattgaaacaaaggaaccacatcagattgtaagtccaatccacaagaacaaatc------atcagaaacactaaataagtttcatacgaaaaact----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75309497 519 + 122973662 tata-aaaataagtaaaATTTGTAAaagaaacaaacagcatcagaaaaaataatacgttagtaattattttt-------taaaaactaaaaactacaaatctcttctttttctttttcttttttgagagacaaggtctcactctctcacccaggatggagtgcagtggtttgaccatcgctcactgcagcctcaaatcctggacttaagtgatcctctcacctcagcctcctcctgaatagctgggactacagatgcacaccgccatgcctggctccttttcatttcttaactg-tttaaaataaattacataaaacaacaattataaaattacagtgttgggcttgtaacatctaaagatgatgtgtgtgtatatatgcactcacgtacataggacaataatggtacaaaggatagggaaaagatggagttacattgaaacaaaggaaccacatcagattgtaagtccaatccagaagagcaaatcaagagtatcagaaacactaaataagttacatacgaaaaact----
i nomLeu3.chr1a            I 329 C 0
s calJac3.chr4             30891174 503 + 171630274 aatg-aaaaaaaataaaatgtgtaaaa-aaaCAAAGAGACCCAGAAGAAATAATatgtaggtaattattttt-------taaaaaccaaaaaccacaaatatcttctttttctttttcttttttgagagacaagctctcactctctcacacaggctagagtgcagtggtgtgaccatagctcactgcagcctcaagtcccggactcaagtgatcctctcacctcag---cctcccgagtagctgagattacagatgcacaccaccatgcctggctccttttcatttcttaactgttttaaaagaaattacataaaacaataactataaaattacagcattggacgtgtaacatctaaagatgatgagtctgtatatatgcactcacacc----------------gacagaggatagggaaaagatggagttacactgaaacaaaggaatcacatc-gatagtaagtccaatccacaagaacaaatctagaatatcagaaacactaaataagtttagtatgaaaaaaattta
i calJac3.chr4             C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            54816 5051 -    750284 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e cebCap1.NW_016107755v1    1305856 3998 -   1771730 I
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e cerAty1.NW_012002513v1      26142   0 -    811324 C
e macFas5.chr4             30408351 99750 - 170955103 I

a score=9661.000000
s hg38.chr6_GL000254v2_alt  1857991 7 +   4827813 ttaagtg
s panTro5.chr6             30703583 7 + 175400573 ttaagtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31127211 7 + 173848474 ttaagtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     634177 7 +   2037526 ttaagtg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75310016 7 + 122973662 ttaagta
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30891677 7 + 171630274 ttaagca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            59867 7 -    750284 TTTAGCA
i saiBol1.JH378327         I 5051 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e cebCap1.NW_016107755v1    1305856 3998 -   1771730 I
e colAng1.NW_012115577v1     716425 0 -   1829203 C
e manLeu1.NW_012106264v1      59129 0 +    779361 C
e cerAty1.NW_012002513v1      26142 0 -    811324 C
e macFas5.chr4             30408351 99750 - 170955103 I

a score=1172307.000000
s hg38.chr6_GL000254v2_alt  1857998 516 +   4827813 tattttactaatttcttctcttaattttttaaaagacgtagaattTggctgggcacagtggctgacgcctgtattcccagcactttgggaggccgaggtgggtggatcacctgagttcaggagttccagaccagcctgggaaacagggcaaaaccccgtctctactaaaaatacaaaaattagctgggcatggttgtgctcacctgaaatcccagttactcaggaggctgagttgggaggatctcttgagcctagaaagcagacgttgcagtgagccgagatcatgccacttcactccagcctggAGTACATCCCTACACCCCCTCAGGTTCAGTCTGAACTGAACAGGGGATACCtgtgaaaggaaaataaatcttggggcccgaaaatcactaagctaaa---------gggaaaagtcaagttgggaactgctgagagcaaacctacgtctcattctattcggtcactcctctgcttactgagataaatgc-tatctgattgcctcctttggagaggctaatc
s panTro5.chr6             30703590 516 + 175400573 tattttactcatttcttctcttaattttttaaaagacgtagaattTggctgggcacagtggctgacgcctgtattcccagcactttgggaggccgaggtgggtggatcacctgagttcaggagttccagaccagcctgggaaacagggcaaaaccccgtctctactaaaaatacaaaaattagctgggcatggttgtgctcacctgaaatcccagttactcaggaggctgagttgggaggatctcttgagcctagaaagcagacgttgcagtgagccgagatcatgccacttcactccagcctggAGTACATCCCTACACCCCCTCAGGTTCAGTCTGAACTGAACAGGGGATACCtgtgaaaggaaaataaatcttggggcccaaaaatcactaagctaaa---------gggaaaagtcaagttgggaactgctgagagcaaacctacgtctcattctattcggtcattcctctgctcactgagataaatgc-tatctgattgcctcctttggagaggctaatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31127218 516 + 173848474 tattttactcatttcttctcttaattttttaaaagacgtagaattTggctgggcacagtggctgacgcctgtattcccagcactttgggaggccgaggtgggtggatcacctgagttcaggagttccagaccagcctgggaaacagggcaaaaccccgtctctactaaaaatacaaaaattagctgggcatggttgtgctcacctgaaatcccagttactcaggaggctgagttgggaggatctcttgagcctagaaagcagacgttgcagtgagccgagataatgccacttcactccagcctggAGTACATCCCTACACCCCCTCAGGTTCAGTCTGAACTGAACAGGGGATACCtgtgaaaggaaaataaatcttggggcccaaaaatcactaagctaaa---------gggaaaagtcaagttgggaactgctgagagcaaacctacgtctcattctattcggtcattcctctgctcactgagataaatgc-tatctgattgcctcctttggagaggctaatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     634184 516 +   2037526 tattttactcatttcttctcttaattttttaaaagacgtagaattTggctgggcacggtggctgacgcctgtattcccagcactttggaaggccgaggtgggtggatcacctgagttcaggagttccagagcagcctgggaaacagggcaaaaccccgtctctactaaaaatacaaaaattagctgggcatggttgtgctctcctgaaatcccagttactcaggaggctgagttgggaggatctcttgagcctagaaagcagacgttgcagtgagccgagatcatgccacttcactccagcctggAGTACATCCCTACACCCCCTCAGGTTCAGTCTGAACTGAACAGGGGATACCtgtgaaaggaaaataaatcttggggcccgaaaatcactaagctaaa---------gggaaaagtcaggctgggaactgctgagagcaaacctacgtctcattctattcagtcactcctctgctcagtgagataaatgc-tatctgattgcctcctttggagaggctaatc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75310023 516 + 122973662 tattttactcttttcttctcttaattttttaaaagacgtagacttTggctgggcacagtggctgacgcctgtattcccagcactttgggaggccgaggtgggtgaatcacttgagttcaggagttccagaccagcctggg-aacagggcaaaactccgtctctactaaaaatacaaaaattagctaggcttggtggtgctcacctgaaatcccagttactcaggaggctgagttgggaggatctcttgagcctagaaagcagatgttgcagtgagcagagatcatgccacttcactccagcctggAGTACATCCCTACACCCCCACAGGTTCAGTCTGAACTGAACAGGGGATACCtgtgaaaggaaaataaatcttggggtccgaaaatcactaagctaaa---------gggaaaagtcaagttgggaactgctgagagcaaacctaagtctcattctattcagtcactcctctgctcactgagataaatgcatatctgattgcctcctttggagaggctaatc
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30891684 510 + 171630274 tattttactcatttcttctcttaattttttagaagacatagaattTgactgggcacagtggctgacacctgtattcccagcactttaggaggccaaggtgg-------------gttcaagtgttccagaccagcctgggcaacaggggaaaactccatctctactaaaaatac-aaaattagctggacatggtggtgcgtacctgtaatcccagctactcaggaggctgaggtgggaggatctcctgagcctagaaggcagaggtttcggtgagccaagatcgtgccactgcgctccagtctggAGCAC-TCCCTACACCCACTCAGGTTCAGTCTGAACTGAACTGGAGATACCtgtgaaaggaaaataaatcttggggccccaaaatcactaagctcaaaaccactaagggaaaagtcaagctgggaactgcttag-gcaaacctacctctcattatattcagtcacccctctgctcactgagataaatacccacctgactgctgcctttggagaggctaatc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            59874 524 -    750284 TATTTTACTCATTTCTTCTCTTAATTTTTTAGAAGACATAGAATTTgactgggcacagtggctgacacctgtattcccagcactttaggaggccgaggtgggtggatcacttgagttcaggagttccagaccagcctgggcaagagggcaaaattccatctctactaaaaatgc-aaaattagctgggcatggtggttcgtacctgtaaccctagctactcaggaggctgaggtgggaggatctcctgggcctaggaggcagaggttgcggtgagccaagatcatgccactgcactccagtctggAGCACATCCTTACACCCCCTCACGTTCAGTCTGAACTGAACTGGAGATACCtgtgaaaggaaaataaatcttgggaccccaaaatcactaagctcaaaatcactacgggaaaagtcaagctgggaactgcttag-gcaaacctacctctcattctattcagtcacccctctgctcactgagatgaatacatatctgactgagtcctctggagaggctaatc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1309854 524 -   1771730 tattttactcatttcttctcttaattttttagaagacatagaattTgaccgggcacagtggctgacacctgtattcccagcactttaggaggctgaggtgggtggatcacttgagttcaggagttctagaccagcctgggcaacagggcaaaactccatctctactaaaaatac-aaaattagctgggcatggtggtgcgtacctgtaatcccagctactcaggaggctgaggttggaggatctcctaagcctagaagccagaggttgtggtgagccaagatcatgccactgcactccagcctggAGCACATTCCTACACCCACTCAGGTTCAGTCTGAACTGAACTGGAGACACCtgtgaaaggaaaataaatcttggggccccaaaatcactaagctcaaaatcactaagagaaaagtcaagctgggagctgcttag-gcaaacctacctctcattctattcaggcatccctctgctcactgagataaatacatatctgactgcttcctttggagaggctaatc
i cebCap1.NW_016107755v1   I 3998 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e cerAty1.NW_012002513v1      26142   0 -    811324 C
e macFas5.chr4             30408351 99750 - 170955103 I

a score=172188.000000
s hg38.chr6_GL000254v2_alt  1858514 187 +   4827813 agaaactcaaaagaggccgggcacagtggctcacacctgtaatcctagcactttgggaggccgaggcggatggatcacccgaggccaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctcagcgtggtggcacatgcctgtaatcccagctat
s panTro5.chr6             30704106 187 + 175400573 agaaactcaaaagaggccgggcacagtggctcacacctgtaatcctagcactttgggaggccgaggcgggtggatcacctgaggccaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctcagcgtggtggcacatgcctgtaatcccagctat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31127734 187 + 173848474 agaaactcaaaagaggccgggcacagtggctcacacctgtaatcctagcactttgggaggccgaggcgggtggatcacctgaggccaggagttcgagacaagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctcagcgtggtggcacatgcctgtaatcccagctat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     634700 187 +   2037526 agaaactcaaaagaggccaggcacagtggctcacacctgtaatcctagcactttgggaggccgaggcgggtggatcacctgaggccaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctcagcgtggtggcacatgcctgtaatcccagctat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75310539 187 + 122973662 agaaactcaaaagaggccaggcgtggtggctcacacctgtaatcctagcactttgggaggccgaggcgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctcggcatggtggcacatgcctgtaatcccagctac
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            60398   0 -    750284 C
e otoGar3.GL873550           670438 27656 +  18854210 T
e cebCap1.NW_016107755v1    1310378   0 -   1771730 C
e calJac3.chr4             30892194   0 + 171630274 C
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e cerAty1.NW_012002513v1      26142   0 -    811324 C
e macFas5.chr4             30408351 99750 - 170955103 I

a score=156359.000000
s hg38.chr6_GL000254v2_alt  1858701 115 +   4827813 tcgggaggctgaggaatgagaatcgcttgaacctgggaggtggaggttgcaacaagccaagatcgcaccactgcactccagcctgtgcaacaggagcgagcctccatctcaaaaa
s panTro5.chr6             30704293 115 + 175400573 tcgggaggctgaggaatgagaatcgcttgaacctgggaggtggaggttgcaacgagctaagatcgcaccactgcactccagcctgtgcaacaggagcgagcctccatctcaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31127921 115 + 173848474 tcgggaggctgaggaatgagaatcgctcgaacctgggaggtggaggttgcaacgagccaagatcgcaccactgcactccagcctgtgcaacaggagcgagcctccatctcacaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     634887 115 +   2037526 tcgggaggctgaggaatgagaatcgcttgaacctgggaggtggaggttgcaacgagccaagatcgcaccactgcactccagcctgtgcaacaggagcgagcctccatctcaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75310726 115 + 122973662 tcgggaggctgaggaatgagaatcgcttgaacctgggaggtggaggttgcaacgagccaagatcgcaccactgcactccagcctgtgtgacaggagcgagcctccatctcaaaaa
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            30064832 115 -  71996105 tcgggaggctgaggaatgagaatcgcttgaacctgggaggtggaggttgcaatgagctgagatcataccactgcactccagcctgcgctataggagcgagcctccatctcaaaaa
i chlSab2.chr17            N 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            60398   0 -    750284 C
e otoGar3.GL873550           670438 27656 +  18854210 T
e cebCap1.NW_016107755v1    1310378   0 -   1771730 C
e calJac3.chr4             30892194   0 + 171630274 C
e colAng1.NW_012115577v1     716425   0 -   1829203 C
e manLeu1.NW_012106264v1      59129   0 +    779361 C
e cerAty1.NW_012002513v1      26142   0 -    811324 C
e macFas5.chr4             30408351 99750 - 170955103 I

a score=5733.000000
s hg38.chr6_GL000254v2_alt  1858816 3 +   4827813 aaa
s panTro5.chr6             30704408 3 + 175400573 aaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31128036 3 + 173848474 aaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     635002 3 +   2037526 aaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75310841 3 + 122973662 aaa
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1     799786 3 +   1495729 aaa
i macNem1.NW_012012100v1   N 0 C 0
s chlSab2.chr17            30064947 3 -  71996105 aaa
i chlSab2.chr17            C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            60398 0 -    750284 C
e otoGar3.GL873550           670438 27656 +  18854210 T
e cebCap1.NW_016107755v1    1310378 0 -   1771730 C
e calJac3.chr4             30892194 0 + 171630274 C
e colAng1.NW_012115577v1     716425 0 -   1829203 C
e manLeu1.NW_012106264v1      59129 0 +    779361 C
e cerAty1.NW_012002513v1      26142 0 -    811324 C
e macFas5.chr4             30408351 99750 - 170955103 I

a score=3276.000000
s hg38.chr6_GL000254v2_alt  1858819 1 +   4827813 a
s panTro5.chr6             30704411 1 + 175400573 a
i panTro5.chr6             C 0 I 2
s panPan2.chr6             31128039 1 + 173848474 a
i panPan2.chr6             C 0 I 2
s gorGor5.CYUI01015528v1     635005 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s macNem1.NW_012012100v1     799789 1 +   1495729 a
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30064950 1 -  71996105 a
i chlSab2.chr17            C 0 I 1
s calJac3.chr4             30892194 1 + 171630274 a
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            60398 1 -    750284 a
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1310378 1 -   1771730 a
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e colAng1.NW_012115577v1     716425 0 -   1829203 C
e manLeu1.NW_012106264v1      59129 0 +    779361 C
e cerAty1.NW_012002513v1      26142 0 -    811324 C
e macFas5.chr4             30408351 99750 - 170955103 I
e nomLeu3.chr1a            75310844 0 + 122973662 C

a score=2053797.000000
s hg38.chr6_GL000254v2_alt  1858820 261 +   4827813 gaaactcaaaagaaagtaaccatttgtctcttatctacctatgacctggaagccccctcgccacttggagttgtcccaccattgcttcaagttgtcccgcctttccagaccgaaccaatgttaatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaaccaagctgtgccctgaccaacttgggcacatgtcatcaggacttcctaaggctgtgtcaccgacacacatcctcaaccctgacaacata
s panTro5.chr6             30704414 261 + 175400573 gaaactcaaaagaaagtaaccatttgtctcttatctacctatgacctggaagccccctcaccacttggagttgtcccaccattgcttcaagttgtcccgcctttccagaccaaaccaatgttaatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaaccaagctgcgccctgaccaacttgggcacatgtcatcaggacttcctaaggctgtgtcaccgacacacatcctcaaccttgacaacata
i panTro5.chr6             I 2 C 0
s panPan2.chr6             31128042 261 + 173848474 agaactcaaaagaaagtaaccatttgtctcttatctacctatgacctggaagccccctcaccacttggagttgtcccaccattgcttcaagttgtcccgcctttccagaccaaaccaatgttaatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaaccaagctgcgccctgaccaacttgggcacatgtcattaggacttcctaaggctgtgtcaccgacacacatcctcaaccttgacaacata
i panPan2.chr6             I 2 C 0
s gorGor5.CYUI01015528v1     635006 261 +   2037526 gaaactcaaaagaaagcaaccatttgtctcttatctacctatgacctggaagccccctcgccacttggagttgtcccaccattgcttcaagttgtcccgcctttccagaccgaaccaatgtttatcttacatatgttgattgatgtctcatgtctccttaaaatgtataaaaccaagctgtgccctgaccaacttgggcacatgtcatcaggacttcctaaggctgtgtcaccgacacacatcctcaaccttgacaacata
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75310844 261 + 122973662 gaaactcaaaagaaagcaaccatttgtgtcttatctacctatgacctggaagccccctcgccactaggagttgtcccacctttgcttcaaattgtcccgcctttccagaccgaaccaatgttaatcttacatatgttgattgaggtctcatgtctccctaaaatgtataaaaccaagctgtgccctgaccaccttgggaacatgtcatcaggacttcctaaggctgtgtcacccgcacacatcctcaaccttgacaacata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31219093 261 + 172585720 gaaactcaaaagaaagcaaccatttgtctcttatctacctatgacctggaagccccctcgccacttgcagttgtccaacctttgcttcaagttgtcccgcctttccagaccaaactgatgttaatcttacatatgttgactgatgtctcatgtctccctaaaatgtataaaaccaagctgtgctctgaccaccttgggcgcatgtcatcagaacctcctgaggctgtgtcacccgcgaacatcctcaacctcgacaacata
i rheMac8.chr4             N 0 C 0
s macFas5.chr4             30508101 261 - 170955103 gaaactcaaaagaaaGCaaccatttgtctcttatctacctatgacctggaagccccctcgccacttgcagttgtccaacctttgcttcaagttgtcccgcctttccagaccaaactgatgttaatcttacatatgttgactgatgtctcatgtctccctaaaatgtataaaaccaagctgtgctctgaccaccttgggcgcatgtcatcagaacctcctgaggctgtgtcacccgcgaacatcctcaacctcgacaacata
i macFas5.chr4             I 99750 C 0
s macNem1.NW_012012100v1     799790 261 +   1495729 gaaactcaaaagaaagcaaccatttgtctcttatctacctatgacctggaagccccctcgccacttgcagttgtccaacctttgcttcaagttgtcccgcctttccagaccaaactgatgttaatcttacatatgttgactgatgtctcatgtctccctaaaatgtataaaaccaagctgtgctctgaccaccttgggcgcatgtcatcagaacctcctgaggctgtgtcacccgcgaacatcctcaacctcgacaacata
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      26142 261 -    811324 gaaactcaaaagaaagcaaccatttgtctcttatctacctatgacctggaagccccctcgccacttgcagttgtccaacctttgcttcaagttgtcccgcctttccagaccaaactgatgttaatcttacatatgttgactgatgtctcatgtctccctaaagtgtataaaaccaaggtgtgctctgaccaccttgggcgcatgtcatcagaacctcctgaggctgtgtcacccgcgaacatcctcaacctcgacaacata
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30064952 261 -  71996105 gaaactcaaaagaaaGCaaccatttgtctcttatctacctatgacctggaagccccctcgccacttggagttgtcccacctttgcttcaagttgtcccgcctttccagacgaaactgatgttaatcttacatatgttgactgatgtctcatgtctccctaaaatgtataaaaccaagctgtgctctgaccaccttcggcgcatatcatcagaacctcctgaggctgtgtaacccgcgaacatcctcaacctcgacaacata
i chlSab2.chr17            I 1 C 0
s manLeu1.NW_012106264v1      59129 261 +    779361 gaaactcaaaagaaagcaaccatttgtctcttatctacctatgacctggaagccccctcgccacttgcagttgtccaacctttgcttcaagttgtcccgcctttccagaccaaactgatgttaatcttacatatgttgactgatgtctcatgtctccctaaagtgtataaaaccaaggtgtgctctgaccaccttgggcgcatgtcatcagaacctcctgaggctgtgtcacccgcgaacatcctcaacctcgacaacata
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     716425 261 -   1829203 gaaactcaaaagaaagcaaccatttgtctcttatctacctatgacctggaagccccctcactacttggagttgtcccacctttgcttcaagttgtcctgcctttccagaccaaactgatgttaatcttacatatgttgactgatgtctcatgtctccctaaaatgtataaaaccaagctgtgctctgaccaccttgggcgcatgtcatcagaacctcctgaggctgtgtcacccgcgaacattctcaacctcgacaacata
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30892195 229 + 171630274 gaaactcaaaagaacgtaaccatttgtctcttatcgaactatgaactggaag---ctccccaattt---gttgttctgcctttgctttgagttgtcccacctttccagactgaaccaatgttcatcttacatatgtttatttatgtctcctgtctccctaaaatgtataaaaccaagctgtactctgacca--------------------------ctgaggctgtgtcaccggcccatgtcctcaaacttggcaacata
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            60399 225 -    750284 gaaactcaaaagaacgtaatcatttgtctcttat----ctatgaactggaagcccctccccaat------ttgttctgcctttgctttgagttgtcccgcctttccagtcggaactaatgctcatcttacatatgttggtttatgtctcctgcgtccctaaaatgtataaaactaagctgtgctctgacca--------------------------ctgacgctgtgtcaccggcccatggcctgaaccttggcaacata
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1310379 232 -   1771730 gaaactcaaaagaatgcaaccatttgtctcttatctaactatgaactggaagcctctccccaattt---gttgttctgcctttgctttgagttgtcccaccttcccagaccgaaccagtgttcatcttacatatgttgatttatgtctcctgtctccctaaaatgtataaaaccaagctgtgctctgacca--------------------------ctgaggctgtgtcaccggcccatgtcctcagccttggcaacata
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T

a score=3493536.000000
s hg38.chr6_GL000254v2_alt  1859081 360 +   4827813 aactttctaaattaactgagacctgtctcagatattcagggttcacaCT-CCCCTGGACCCCCTGACTTTCTTCAGGGCACTGGCCACTTTCTTGTCTGTCTTTGGACACTCTCCTCTAGAAGTCTTTGAAATTCTTGAGGCAGGAAGGACCAATTCCCAGCCCTGAATCTTGC-ATAAAGTGGGTCCTTTTTAAATGGAAATACGGCTACTCCTCAAAGGAAGGCTAGGAATTTTGCTCTGTGTGACCCTAGTCGTAGTTCTTCACAGAGGGCTCCATTTCACTTGCCTTTCCTTCTGCTTTTTTCTTCACTCGTTTCCCCACAGAGCAAGACAAAAGAAGCCGGCAAGGATGGCTCTGGT
s panTro5.chr6             30704675 360 + 175400573 aactttctaaattaactgagacctgtctcagatattcagggttcacaCT-CCCCTGGACCCCCTGACTTTCTTCAGGGCACTGGCCACTTTCTTGTCTGTCTTTGGACACTCTCCTCTAGAAGTCTTTGAAATTCTTGAGGCAGGAAGGACCAATTCCCAGCCCTGAATCTTGC-ATAAAGTGGGTCCTTTTTAAATGGAAATACGGCTACTCCTCAAAGGAAGGCTAGGAATTTTGCCCTGTGTGACCCTAGTCGTGGTTCTTCACAGAGGGCTCCATTTCACTTGCCTTTCCTTCTGCTTTTTTCTTCACTCGTTTCCCCACAGAGCAAGACAAAAGAAGCCGGCAAGGATGGCTCTGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31128303 360 + 173848474 aactttctaaattaactgagacctgtctcagatattcagggttcacaCT-CCCCTGGACCCCCTGACTTTCTTCAGGGCACTGGCCACTTTCTTGTCTGTCTTTGGACACTCTCCTCTAGAAGTCTTTGAAATTCTTGAGGCAGGAAGGACCAATTCCCAGCCCTGAATCTTGC-ATAAAGTGGGTCCTTTTTAAATGGAAATACGGCTACTCCTCAAAGGAAGGCTAGGAATTTTGCCCTGTGTGACCCTAGTCGTGGTTCTTCACAGAGGGCTCCATTTCACTTGCCTTTCCTTCTGCTTTTTTCTTCACTCGTTTCCCCACAGAGCAAGACAAAAGAAGCCGGCAAGGATGGCTCTGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     635267 360 +   2037526 aactttctaaattaactgagacctgtctcagatattcagggttcacaCT-CCCCTGGACTCCCTGACTTTCTTCAGGGCACTGGCCACTTTCTTGTCTGTCTTTGGACACTCTCCTCTAGAAGTCTTTGAAATTCTTGAGGCAGGAAGGACCAATTCCCAGCCCTGAATCTTGC-ATAACGTGGGTCCTTTTTAAATGGAAATACGGCTACTCCTCAAAGGAAGGCTAGGAATTTTGCCCTGTGTGACCCTAGTCGTGGTTCTTCACAGAGGGCTCCATTTCACTTGCCTTTCCTTCTGCTTTTTTCTTCACTCGTTTCCCCACAGAGCAAGACAAAAGAAGCCGGCAAGGATGGCTCTGGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75311105 361 + 122973662 aactttctaaattaactgagacctgtctcagatattcggggttcacaCT-CCCCTGGACCCCCTGGCTTTCTTCAGGGCACTGGCCACTTTCTTGTCTGTCTTTGGACACTCTCCTCTAGAAGTCTTTGAAATTCTTGAGGCAGGAAGGACCATTTCCCAGCCCCGAATCTTGCAATAAAGTGGGTCCTTTTTAAATGGAAATACGGCTACTCCTCAAAGGAAGGCTAGGAATTTTGCCGTGTGTGACCCTAGTCGTGGTTCTTCACAGAGGGCTCCGTTTCACTTGCCTTGCCTTCTGCTTTTTTCTTCACTCGTTTCCCCACAGAGCAAGACAAAAGAAGCTGGCAAGGATGGCTCTGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31219354 360 + 172585720 aactttctaaattaaccaagacctgtctcagatattcggggttcacaAT-CCCCTGGATCCCCTGACTATCTTCAGGGCACTGGCCACTTTCTTGTCTGTCTTTGTACACCCTCCTCTGGAAGTCTTTGAAATTCTTGAGGCAGGAAGGACCATTTCCCAGCTCCGAATCTTGC-ATAAAGTGGGTCCTTTATGAATGGAAATAGGGCTACTCCCCAAAGTAAGGCTAGGAATTTTGCCGTGTGTGACCCTAGTCGTGGTTGTTCACAGAGGGCTCCATTTCACTTGCCTTTCCTTCTGCTTCTTTCTTCACTCGTTTCCCCACAGAGCAGGACAAAAGAAGCTGGCAAGGATGGCTCTGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30508362 360 - 170955103 aactttctaaattaaccaagacctgtctcagatattcggggttcacaAT-CCCCTGGATCCCCTGACTATCTTCAGGGCACTGGCCACTTTCTTGTCTGTCTTTGTACACCCTCCTCTGGAAGTCTTTGAAATTCTTGAGGCAGGAAGGACCATTTCCCAGCTCCGAATCTTGC-ATAAAGTGGGTCCTTTATGAATGGAAATAGGGCTACTCCCCAAAGTAAGGCTAGGAATTTTGCCGTGTGTGACCCTAGTCGTGGTTGTTCACAGAGGGCTCCATTTCACTTGCCTTTCCTTCTGCTTCTTTCTTCACTCGTTTCCCCACAGAGCAGGACAAAAGAAGCTGGCAAGGATGGCTCTGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     800051 360 +   1495729 aactttctaaattaaccaagacctgtctcagatattcggggttcacaAT-CCCCTGGATCCCCTGACTATCTTCAGGGCACTGGCCACTTTCTTGTCTGTCTTTGTACACCCTCCTCTGGAAGTCTTTGAAATTCTTGAGGCAGGAAGGACCATTTCCCAGCTCCGAATCTTGC-ATAAAGTGGGTCCTTTATGAATGGAAATAGGGCTACTCCCCAAAGTAAGGCTAGGAATTTTGCCGTGTGTGACCCTAGTCGTGGTTGTTCACAGAGGGCTCCATTTCACTTGCCTTTCCTTCTGCTTCTTTCTTCACTCGTTTCCCCACAGAGCAGGACAAAAGAAGCCGGCAAGGATGGCTCTGGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      26403 360 -    811324 aactttctaaattaaccaagacctgtctcagatattcggggttcacaAT-CCCCTGGATCCCCTGACTATCTTCAGGGCACTGGCCACTTTCTTGTCTGTCTTTGTACACCCTCCTCTGGAAGTCTTTGAAATTCTTGAGGCAGGAAGGACCATTTCCCAGCTCCGAATCTTGC-ATAAAGTGGGTCCTTTATGAATGGAAATAGGGCTACTCCCCAAAGTAAGGCTAGGAATTTTGCTGTGTGTGACCCTAGTCGTGGTTGTTCACAGAGGGCTCCATTTCACTTGCCTTTCCTTCTGCTTCTTTCTTCACTCGTTTCCCCACAGAGCAGGACAAAAGAAGCCGGCAAGGATGGCTCTGGT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30065213 360 -  71996105 aactttctaaattaactgagacctgtctcacatattcggggttcacaCT-CCCCTGGATCCCCTGACTATCTTCAGGGCACTGGCCACTTTCTTGTCTGTCTTTGTACACCCTCCTCTGGAAGTCTTTGAAATTCTTGAGGCAGGAAGGACCATTTCCCAGCTCCGAATCTTGC-ATAAAGTGGGTCCTTTATGAATGGAAATAGGGCTACTCCCCAAAGTAAGGCTAGGAGTTTTGCCGTGTGTGACCGTAGTCGTGGTTGTTCACAGAGGGCTCCATTTCACTTGCCTTTCCTTCTGCTTCTTTCTTCACTCGTTTCCCCACAGAGCAGGACAAAAGAAGCCGGCAAGGATGGCTCTGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      59390 360 +    779361 aactttctaaattaaccaagacctgtctcagatattcggggttcacaAT-CCCCTGGATCCCCTGACTATCTTCAGGGCACTGGCCACTTTCTTGTCTGTCTTTGTACACCCTCCTCTGGAAGTCTTTGAAATTCTTGAGGCAGGAAGGACCATTTCCCAGCTCCGAATCTTGC-ATAAAGTGGGTCCTTTATGAATGGAAATAGGGCTACTCCCCAAAGTAAGGCTAGGAATTTTGCTGTGTGTGACCCTAGTCGTGGTTGTTCACAGAGGGCTCCATTTCACTTGCCTTTCCTTCTGCTTCTTTCTTCACTCGTTTCCCCACAGAGCAGGACAAAAGAAGCCGGCAAGGATGGCTCTGGT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     716686 360 -   1829203 aactttctaaattaactgagacctgtctcagatattcggggttcacaCT-CCCCTGGATACCCTGACTATCTTCAGGGCACTGGCCACTTTCTTGTCTGTCTTTGTACACCCTCCTCTGGAAGTCTTTGAAATTCTTGAGGCAGGAAGGACCATTTCCCAGCTCCAAATCTTGC-ATAAAGTGGGTCCTTTATGAATGGAAATAGGGCTTCTCCTCAAAGTAAGGCTAGGAATTTTGCCGTGTGTGACTCTAGTCGTGGTTGTTCACAGAGGGCTCCATTTCACTTGCCTTTCCTTCTGCTTTTTTCTTCACTCGTTTCCCCACAGAGCAGGACAAAAGAAGCTGGCAAGGATGGCTCTGGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30892424 353 + 171630274 aactttctaaattagctgagagctgtctcagatattcagggttcacaCT-CCCCTGGGCTCCCTGACTTTCTTCAGGGCACTGGCCCCTTTCTTGTCTGTCTTTGGACACCCTCC-AGGGAAGTCTTTGAAATTCTTGAGGCAGGAAGGACCATTTCCCAGCCCCGAATCTTGC-ATAAAGTGGGTCTCTTATAAATGGAAATAGGGCTTCTCCTCAAAGGCAGGCTGGGAATTTTGC-ATGTATGACCCTA---GCGGTTCTTCATAGAGGGTT--GTTTCACTTGCCTTTCCTTCTGCTTTTTTCTTCACTTGCTTCCCCACAGAGCAGGACGAAAGGAGCCAGCAAGGATGGCTCTGGT
i calJac3.chr4             C 0 I 2
s saiBol1.JH378327            60624 348 -    750284 aactttctaaattagctgagagctgtctcagatattcagggttcgcaCTCCCCCTGGGCTCCCTGACTTTCTTCAGGGCACTGGTCCCTTTCTTGTCTGTCTTTGGACACCCTCA-AGGTAAGTCTTTGAAATTCTTGAGGCAGGAAGGACCATTTCCCAGCCCTGAATCTTGC-ATAAAGTAGGTCCCTTATAAATGGAAATAGGGCTACTCCTCAAAGGCAGGCTGGGAATTTTGC-GTGTATGACCCGA---GCGGTTCTTCACAGA-GGTT--GTTTCACTTG-----CCTTCTGCTTTTTTCTTCTCTTGCTTCCCCACAGAGCAGGACGAAAGGAGCCAGCAAGGATGGCTCTGGT
i saiBol1.JH378327         C 0 I 2
s cebCap1.NW_016107755v1    1310611 350 -   1771730 aactttctaaattagctgagagctgtctcagatattcagggttcacaCT-CCCCTGGGCTCCCTGACTTTCTTCAGGGCACTGGCCCCTTTCTTGTCTGTCTTTGGACACCCTCC-AGGGAAGTCTTTGAAATTTTTGAGGCAGGAAGGACCATTTCCCAGCCCCTAATCTTGC-ATAAAGTGGCTCCCTTATAAATGGAAATAGAGCTCCTCCTCAAAGGCAGGCTGGGAATTTTGC-CTGCATGACCCCA---GCGGGTCTTC--AGA-GGTT--GTTTCACTTGCCTTTCCTTCTGCGTTTTTCTTCACTTGCTTCCCCACAGAGCAGGACGAAAGGAGCCAGCAAGGATGGCTCCGGT
i cebCap1.NW_016107755v1   C 0 I 2
s aotNan1.NW_018511496v1         42 353 -    566255 aactttctaaattagctgagagctgtctcagatattcagggttcacaCT-ACCCTGGGCTCCCTGACTTTCTTCAGGGCACTGGCCCCTTTCTTGTCTGTCTTTGGACACCCTCC-AGGGAAGTCTTTGAAATTGTTGAGGCAGGAAGGACCATTTCCCAGCCCCGAATCTTGC-ATAAAGTGGGTCCCTTACAAATGGAAATAGGGCTACTCCTCAAAGGCTGGCTGGGAATTTTGC-GTGTTTGACCCTA---GTGGTTCTTCACAGAGGGTG--GTTTCACTTGCCTTTCTTTCTGCTTTTTTCTTCACTTGCTTCCCCACAGAGCAGGATGAAAGGAGCCAGTAAGGATGGCTCTGGT
i aotNan1.NW_018511496v1   N 0 I 199
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T

a score=718640.000000
s hg38.chr6_GL000254v2_alt  1859441 79 +   4827813 CAGGGTCTGCCTTCAGCCACCCAAATGGGATTGCAAAGAGGAGGACAGGGATGGAAAGGGGAAAGTTTGA-----TTTGGTTTG
s panTro5.chr6             30705035 79 + 175400573 CGGGGTCTGCCTTCAGCCACCCAGATGGAATTGCAAAGAGGAGGACAGGGATGGAAAGGGGAAAGTTTGA-----TTTGGTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31128663 79 + 173848474 CGGGGTCTGCCTTCAGCCACCCAGATGGGATTGCAAAGAGGAGGACAGGGATGGAAAGGGGAAAGTTTGA-----TTTGGTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     635627 79 +   2037526 CGGGGTCTGCCTTCAGCCACCCAGATGGGATTGCAAAGAGGAGGACAGGGATGGAAAGGGGAAAGTTTGA-----TTTGGTTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75311466 79 + 122973662 CGAGGTCTGCCTTCAGCCACCCAGATGAGATTGCAAAGAGGAGGACAGGGATGGAAAAGGGAAAGCTTGA-----TTTGGTTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31219714 79 + 172585720 CGGGGTCTGCCTTCAGCCACCCAGATGGGATTGCAAACAGGAGGACAGGGATGGAAAGGGGAAAGTTTGA-----TTTGGTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30508722 79 - 170955103 CGGGGTCTGCCCTCAGCCACCCAGATGGGATTGCAAACAGGAGGACAGGGATGGAAACGGGAAAGtttga-----tttggtttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     800411 79 +   1495729 CGGGGTCTGCCTTCAGCCACCCAGATGGGATTGCAAAGAGGAGGACAGGGATGGAAAGGGGAAAGtttga-----tttggtttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      26763 79 -    811324 CGGGGTCTGCCTTCAGCCACCCAGATGGGATTGCAAAGAGGAGGACAGGGATGGAAAGGGGAAAGtttga-----tttggtttt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30065573 84 -  71996105 CGGGGTCTGCCTTCAGCCACCCAGATGGGATTGCAAAGAGGAGGACAGGGATGGAAAGGGGAAAGtttgattttgttttgtttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      59750 79 +    779361 CGGGGTCTGCCTTCAGCCACCCAGATGGGATTGCAAAGAGGAGGACAGGGATGGAAAGGGGAAAGtttga-----tttggtttt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     717046 79 -   1829203 CGGGGTCTGCCTTCAGCCACCCAGATGGGATTGCAAAGAGGAGGACAGGGATAGAAAGGGGAAAGtttga-----tttggtttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30892779 79 + 171630274 TGGGGTCTGCCTTCAGCCACCCAGGTGGAATTGCAAAGAGGAGGACAGGGATGGAAAGAGGAAAGTTTGA-----TTTGATTTG
i calJac3.chr4             I 2 I 341
s saiBol1.JH378327            60974 79 -    750284 TGGGGTCTGCCTTTAGCCACCCTGGTGGAATTGCAAAGAGAAGGACAGGGATGGAAAGAGGAAAGTTTGA-----TTTGGTTTG
i saiBol1.JH378327         I 2 C 0
s cebCap1.NW_016107755v1    1310963 79 -   1771730 TGGGGTCTGCCTTCAGCCACCCAGGTGGAATTGCAAAGAGAAGGACAGGGATGGAAAGAGGAAAGTTTGA-----TTTGGTTTG
i cebCap1.NW_016107755v1   I 2 I 320
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e aotNan1.NW_018511496v1        395 199 -    566255 I

a score=6714.000000
s hg38.chr6_GL000254v2_alt  1859520 2 +   4827813 GT-
s panTro5.chr6             30705114 2 + 175400573 GT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31128742 2 + 173848474 GT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     635706 2 +   2037526 GT-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75311545 2 + 122973662 GT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31219793 2 + 172585720 GT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30508801 2 - 170955103 gt-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     800490 2 +   1495729 gt-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      26842 2 -    811324 gt-
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30065657 2 -  71996105 gt-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      59829 2 +    779361 gt-
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     717125 2 -   1829203 gt-
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            61053 2 -    750284 -CC
i saiBol1.JH378327         C 0 I 2
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e aotNan1.NW_018511496v1        395 199 -    566255 I
e cebCap1.NW_016107755v1    1311042 320 -   1771730 I
e calJac3.chr4             30892858 341 + 171630274 I

a score=8370.000000
s hg38.chr6_GL000254v2_alt  1859522 4 +   4827813 TTGC
s panTro5.chr6             30705116 4 + 175400573 TTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31128744 4 + 173848474 TTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     635708 4 +   2037526 TTGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75311547 4 + 122973662 TTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31219795 4 + 172585720 TTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30508803 4 - 170955103 tttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     800492 4 +   1495729 tttg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      26844 4 -    811324 tttg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30065659 4 -  71996105 tttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      59831 4 +    779361 tttg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     717127 4 -   1829203 tttg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30893199 4 + 171630274 TTGC
i calJac3.chr4             I 341 C 0
s saiBol1.JH378327            61057 2 -    750284 tt--
i saiBol1.JH378327         I 2 I 950
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e aotNan1.NW_018511496v1        395 199 -    566255 I
e cebCap1.NW_016107755v1    1311042 320 -   1771730 I

a score=3627.000000
s hg38.chr6_GL000254v2_alt  1859526 3 +   4827813 -TTA
s panTro5.chr6             30705120 3 + 175400573 -TTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31128748 3 + 173848474 -TTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     635712 3 +   2037526 -TTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75311551 3 + 122973662 -TTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31219799 3 + 172585720 -TTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30508807 3 - 170955103 -ttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     800496 3 +   1495729 -ttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      26848 3 -    811324 -ttt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30065663 3 -  71996105 -ttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      59835 3 +    779361 -ttt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     717131 3 -   1829203 -ttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30893203 2 + 171630274 -TT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            62009 3 -    750284 TTT-
i saiBol1.JH378327         I 950 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e aotNan1.NW_018511496v1        395 199 -    566255 I
e cebCap1.NW_016107755v1    1311042 320 -   1771730 I

a score=-17527.000000
s hg38.chr6_GL000254v2_alt  1859529 2 +   4827813 G-----T
s panTro5.chr6             30705123 2 + 175400573 G-----T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31128751 2 + 173848474 G-----T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     635715 2 +   2037526 G-----T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75311554 2 + 122973662 G-----T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31219802 2 + 172585720 G-----T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30508810 2 - 170955103 t-----t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     800499 7 +   1495729 tgtttgt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      26851 7 -    811324 tgtttgt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30065666 7 -  71996105 tgtttGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      59838 7 +    779361 tgtttgt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     717134 2 -   1829203 g-----t
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30893205 2 + 171630274 -----GT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            62012 2 -    750284 -----GT
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1        594 2 -    566255 -----GT
i aotNan1.NW_018511496v1   I 199 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e cebCap1.NW_016107755v1    1311042 320 -   1771730 I

a score=1334255.000000
s hg38.chr6_GL000254v2_alt  1859531 134 +   4827813 CTTTCTATTGGTACCACTTCCTTATCCCAACCTCATCATCTTCCCCGATCCCTACCAACCCACTGCAGGCATATGAG---------------CCCTAAAATCTGGGAAAGGCTTTTTTCCCTAGGGGCCCTGGCCTCACAGACTTGCCC
s panTro5.chr6             30705125 134 + 175400573 CTTTCTATTGGTACCACTTCCTTATCCCAACCTCATCATCTTCCCCGATCCCTACCAACCCACTGCAGGCATATGAG---------------CCCTAAAATCTGGGAAAGGCTTTTTTCCCTAGGGGCCCTGGCCTCACAGACTTGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31128753 134 + 173848474 CTTTCTATTGGTACCACTTCCTTATCCCAACCTCATCATCTTCCCCGATCCCTACCAACCCACTGCAGGCATATGAG---------------CCCTAAAATCTGGGAAAGGCTTTTTTCCCTAGGGGCCCTGGCCTCACAGACTTGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     635717 134 +   2037526 CTTTCTATTGGTACCACTTCCTTATCCCAACCTCATCATCTTCCCCGATCCCTACCAACCCACTGCAGGCATATGAG---------------CCCTAAAATCTGGGAAAGGCTTTTTTCCCTAGGGGCCCTGGCCTCACAGACTTGCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75311556 134 + 122973662 CTTTCTATTGGTACCACTTCCTTATCCCAACCTCATCAACCTCCCCTATCCCTACCAACCCACTGCAGGCGTATGAG---------------CCCTAAAATCTGGGAGAGGCTCTTTTCCCTAGGGGCCCTGGCCTAGCAGACTTGCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31219804 134 + 172585720 CTTTCTATTGGTACCACTTCCTCATCCCAACCTCATCATCCTCCCCGATCCCTACCAACCCACTGCAGGCTTCTGAG---------------TCCTAAAATCTGGGAAAGGCTCTTTTCCCTAGGGGCCCTGGCCTCGCAGACTTGCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30508812 134 - 170955103 ctttCTATTGGTACCACTTCCTCATCCCAACCTCATCATCCTCCCCGATCCCTACCAACCCACTGCAGGCTTCTGAG---------------TCCTAAAATCTGGGAAAGGCTCTTTTCCCTAGGGGCCCTGGCCTCGCAGACTTGCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     800506 134 +   1495729 ctttctattgGTACCACTTCCTCATCCCAACCTCATCATCCTCCCCGATCCTTACCAACCCACTGCAGGCTTCTGAG---------------TCCTAAAATCTGGGAAAGGCTCTTTTCCCTAGGGGCCCTGGCCTCGCAGACTTGCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      26858 134 -    811324 ctttctattgGTACCACTTCCTCATCCCAACCTCATCATCCTCCCCGATCCCTACCAACCCACTGCAGGCTTCTGAG---------------TCCTAAAATCTGGGAAAGGCTCTTTTCCCTAGGGGCCCTGGCCTCGCAGACTTGCCC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30065673 134 -  71996105 CTTTCTATTGGTACCACTTCCTCATCCCAACCTCATCATCCTCCCCGATCCCTACCAACCCACTGCAGGCTTCTGAG---------------TCCTAAAATCTGGGAAAGGCTCTTTTCCCTAGGGACCCTGGCCTCGCAGACTTGCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      59845 134 +    779361 ctttctattgGTACCACTTCCTCATCCCAACCTCATCATCCTCCCCGATCCCTACCAACCCACTGCAGGCTTCTGAG---------------TCCTAAAATCTGGGAAAGGCTCTTTTCCCTAGGGGCCCTGGCCTCGCAGACTTGCCC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     717136 134 -   1829203 ctttctattgGTACCACTTCTTTATCCCAACCTCATCATCCTCCCCGATCCCTACCAACCCACTGCAGGCTTCTGAG---------------CCCTAAGATCTGGGAAAGGCTCTTTTCCCTAGGGGCCCTGGCCTCGCAGACTTGCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30893207 149 + 171630274 CTTTCTTCTGGCACCACTTCCTCATACCAACCTCATCATCCTACCCCATCCCTACCGACCCACTGCGGGCGTCTGAGCCCAGTCCCCTTGATCCCTAAAATCTGGGAGAGGCTCTTTCCCCTAGGGGCCCTGCCTTCGCAGACTTGCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            62014 148 -    750284 CTTTCTTTTGGCAGCACTTCCTCATCCCAACCTCATCATCCTCCCCTATCCCTACCAACCCACTGCGGGCGTCTGAGCCCAGTCCCCTTGATCCCTAAAATCTGGGAGAGGCTCTTTCCACTAGGGGCTCTG-CTTCGCAGACTTGTCC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1311362 149 -   1771730 CTTTCTTTTGGCACCACTTCCTCATCCCAACCTCATCATCCTCCCCCATCCCTACCAACCCACTGCGGGCGTCTGAGCCCTGTCCCCTTGATCCCTAAAATCTGGGAGAGGCTCTTTCCCCTAGGGGCCCTGCCTTCGCAGACTTGCCC
i cebCap1.NW_016107755v1   I 320 I 18
s aotNan1.NW_018511496v1        596 149 -    566255 CTTTCTTTTGGCtccacttcctcatcccaacctcatcatcatccccgatccCTACTAACCCACTGCGGGCGTCTGAGCCCAGTCGCCTTGATCCCTAAAATCTGAGAGAGGCTCTTTCCCCTAGGGGCCCTGCCTTCGCGGACTTGCCC
i aotNan1.NW_018511496v1   C 0 I 334
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T

a score=-323.000000
s hg38.chr6_GL000254v2_alt  1859665 3 +   4827813 -AGG
s panTro5.chr6             30705259 3 + 175400573 -AGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31128887 3 + 173848474 -AGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     635851 2 +   2037526 -A-G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75311690 3 + 122973662 -AGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31219938 3 + 172585720 -GGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30508946 3 - 170955103 -GGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     800640 3 +   1495729 -GGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      26992 3 -    811324 -AGG
i cerAty1.NW_012002513v1   C 0 I 776
s chlSab2.chr17            30065807 3 -  71996105 -AGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      59979 3 +    779361 -AGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     717270 3 -   1829203 -AGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30893356 3 + 171630274 GAG-
i calJac3.chr4             C 0 I 8
s saiBol1.JH378327            62162 3 -    750284 GAG-
i saiBol1.JH378327         C 0 I 8
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e aotNan1.NW_018511496v1        745 334 -    566255 I
e cebCap1.NW_016107755v1    1311511 18 -   1771730 I

a score=19507.000000
s hg38.chr6_GL000254v2_alt  1859668 6 +   4827813 GGGGTA-
s panTro5.chr6             30705262 6 + 175400573 GGGGTA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31128890 6 + 173848474 GGGGTA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     635853 6 +   2037526 GGGGTA-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75311693 6 + 122973662 GGGGTA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31219941 5 + 172585720 -GGGGA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30508949 5 - 170955103 -GGGGA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     800643 5 +   1495729 -GGGGA-
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30065810 6 -  71996105 AGGGGA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      59982 6 +    779361 GGGGGA-
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     717273 6 -   1829203 GGGGGA-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30893367 7 + 171630274 GGGGTGG
i calJac3.chr4             I 8 C 0
s saiBol1.JH378327            62173 7 -    750284 GGGGTGG
i saiBol1.JH378327         I 8 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e aotNan1.NW_018511496v1        745 334 -    566255 I
e cebCap1.NW_016107755v1    1311511 18 -   1771730 I
e cerAty1.NW_012002513v1      26995 776 -    811324 I

a score=147637.000000
s hg38.chr6_GL000254v2_alt  1859674 21 +   4827813 AATTCTCAGTGGCTCAG-TGGC
s panTro5.chr6             30705268 21 + 175400573 AATTCTCAGTGGCTCAG-TGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31128896 21 + 173848474 AATTCTCAGTGGCTCAG-TGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     635859 13 +   2037526 AATT--------CTCAG-TGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75311699 21 + 122973662 AATTCTCAGTGGCTCAG-TGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31219946 21 + 172585720 AATTCTCAGTGGCTCAG-TGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30508954 21 - 170955103 AATTCTCAGTGGCTCAG-TGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     800648 21 +   1495729 AATTCTCAGTGGCTCAG-TGTC
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30065816 21 -  71996105 AATTCTCAGTGGCTCAG-TGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      59988 21 +    779361 AATTCTCAGTGGCTCAG-TGTC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     717279 22 -   1829203 AATTCTCAGTGGCTCAGTTGGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30893374 21 + 171630274 AATTCTGAGTGGCTCAG-TGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            62180 21 -    750284 AATTCTCAGTGGCTCAG-TGGC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1311529 21 -   1771730 AATTCTCAGTGGCTCAG-TGGC
i cebCap1.NW_016107755v1   I 18 I 23
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e aotNan1.NW_018511496v1        745 334 -    566255 I
e cerAty1.NW_012002513v1      26995 776 -    811324 I

a score=121657.000000
s hg38.chr6_GL000254v2_alt  1859695 21 +   4827813 ACGTGCCTCACGTCCTCACCG
s panTro5.chr6             30705289 21 + 175400573 GCGTGCCTCACGTCCTCACCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31128917 21 + 173848474 GCGTGCCTCACGTCCTCACCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     635872 21 +   2037526 GCGTGCCTCACGTCCTCACCG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75311720 21 + 122973662 GCGCGCCTCACGTCCTCACCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31219967 21 + 172585720 GCGTGCCTCACGTCCTCACTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30508975 21 - 170955103 GCGTGCCTCACGTCCTCACTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     800669 21 +   1495729 GCGTGCCTCACGTCCTCACTG
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30065837 21 -  71996105 GCGTGCCTCACGTCCTCACTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      60009 21 +    779361 GCGTGCCTCACGTCCTCACTG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     717301 21 -   1829203 ACATGCCTCACGTCCTCACCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30893395 21 + 171630274 CCCCGCCGCACTTGCTCACTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            62201 21 -    750284 CCGCGCCGCACTTGCCCACTG
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           670438 27656 +  18854210 T
e aotNan1.NW_018511496v1        745 334 -    566255 I
e cebCap1.NW_016107755v1    1311550 23 -   1771730 I
e cerAty1.NW_012002513v1      26995 776 -    811324 I

a score=27128.000000
s hg38.chr6_GL000254v2_alt  1859716  8 +   4827813 GCAGCC------------------------ta
s panTro5.chr6             30705310  8 + 175400573 GCAGCC------------------------ta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31128938 12 + 173848474 GCAGCC--------------------tagata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     635893 32 +   2037526 GCAGCCtagatagatagatagatagatagata
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75311741  8 + 122973662 GCAGCC------------------------ta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31219988  8 + 172585720 GCAGCC------------------------TA
i rheMac8.chr4             C 0 I 245
s macFas5.chr4             30508996  8 - 170955103 GCAGCC------------------------TA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     800690  8 +   1495729 GCAGCC------------------------TA
i macNem1.NW_012012100v1   C 0 T 3016
s chlSab2.chr17            30065858  8 -  71996105 GCAGCC------------------------ta
i chlSab2.chr17            C 0 I 245
s manLeu1.NW_012106264v1      60030  8 +    779361 GCAGCC------------------------TA
i manLeu1.NW_012106264v1   C 0 M 785
s colAng1.NW_012115577v1     717322  8 -   1829203 GCAGCC------------------------ta
i colAng1.NW_012115577v1   C 0 I 12841
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            62222  0 -    750284 C
e otoGar3.GL873550           670438 27656 +  18854210 T
e aotNan1.NW_018511496v1        745 334 -    566255 I
e cebCap1.NW_016107755v1    1311550 23 -   1771730 I
e calJac3.chr4             30893416  0 + 171630274 C
e cerAty1.NW_012002513v1      26995 776 -    811324 I

a score=24709.000000
s hg38.chr6_GL000254v2_alt  1859724 51 +   4827813 gatagataga----tagatagatagatagatagatagatgatagatagata--------tata
s panTro5.chr6             30705318 59 + 175400573 gatagataga----tagatagatagatagatagatagatgatagatagatagatatagatata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31128950 59 + 173848474 gatagataga----tagatagatagatagatagatagatgatagatagatagatatagatata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     635925 59 +   2037526 gatagataga----tagatagatagatagatagatagatgatagatagatagatatagatata
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75311749 23 + 122973662 tatatatata----tatatatatataC------------------------------------
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30509004 62 - 170955103 TATtaatataatataatataatataatatatatttatataataaat-gacatatatttatata
i macFas5.chr4             C 0 I 183
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            62222  0 -    750284 C
e otoGar3.GL873550           670438 27656 +  18854210 T
e aotNan1.NW_018511496v1        745 334 -    566255 I
e cebCap1.NW_016107755v1    1311550 23 -   1771730 I
e calJac3.chr4             30893416  0 + 171630274 C
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      60038 785 +    779361 M
e chlSab2.chr17            30065866 245 -  71996105 I
e cerAty1.NW_012002513v1      26995 776 -    811324 I
e macNem1.NW_012012100v1     800698 3016 +   1495729 T
e rheMac8.chr4             31219996 245 + 172585720 I

a score=312.000000
s hg38.chr6_GL000254v2_alt  1859775 4 +   4827813 gttt
s panTro5.chr6             30705377 4 + 175400573 gttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129009 4 + 173848474 gttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     635984 2 +   2037526 gt--
i gorGor5.CYUI01015528v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            62222 0 -    750284 C
e otoGar3.GL873550           670438 27656 +  18854210 T
e aotNan1.NW_018511496v1        745 334 -    566255 I
e cebCap1.NW_016107755v1    1311550 23 -   1771730 I
e calJac3.chr4             30893416 0 + 171630274 C
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      60038 785 +    779361 M
e chlSab2.chr17            30065866 245 -  71996105 I
e cerAty1.NW_012002513v1      26995 776 -    811324 I
e macNem1.NW_012012100v1     800698 3016 +   1495729 T
e macFas5.chr4             30509066 183 - 170955103 I
e rheMac8.chr4             31219996 245 + 172585720 I
e nomLeu3.chr1a            75311772 0 + 122973662 C

a score=827.000000
s hg38.chr6_GL000254v2_alt  1859779 3 +   4827813 ttt
s panTro5.chr6             30705381 3 + 175400573 ttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129013 3 + 173848474 ttg
i panPan2.chr6             C 0 C 0
s chlSab2.chr17            30066111 3 -  71996105 ttt
i chlSab2.chr17            I 245 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            62222 0 -    750284 C
e otoGar3.GL873550           670438 27656 +  18854210 T
e aotNan1.NW_018511496v1        745 334 -    566255 I
e cebCap1.NW_016107755v1    1311550 23 -   1771730 I
e calJac3.chr4             30893416 0 + 171630274 C
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      60038 785 +    779361 M
e cerAty1.NW_012002513v1      26995 776 -    811324 I
e macNem1.NW_012012100v1     800698 3016 +   1495729 T
e macFas5.chr4             30509066 183 - 170955103 I
e rheMac8.chr4             31219996 245 + 172585720 I
e nomLeu3.chr1a            75311772 0 + 122973662 C
e gorGor5.CYUI01015528v1     635986 0 +   2037526 C

a score=5733.000000
s hg38.chr6_GL000254v2_alt  1859782 3 +   4827813 ttt
s panTro5.chr6             30705384 3 + 175400573 ttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129016 3 + 173848474 ttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     635986 3 +   2037526 ttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75311772 3 + 122973662 ttt
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            30066114 3 -  71996105 ttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      60853 3 +    779361 ttt
i manLeu1.NW_012106264v1   M 785 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            62222 0 -    750284 C
e otoGar3.GL873550           670438 27656 +  18854210 T
e aotNan1.NW_018511496v1        745 334 -    566255 I
e cebCap1.NW_016107755v1    1311550 23 -   1771730 I
e calJac3.chr4             30893416 0 + 171630274 C
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e cerAty1.NW_012002513v1      26995 776 -    811324 I
e macNem1.NW_012012100v1     800698 3016 +   1495729 T
e macFas5.chr4             30509066 183 - 170955103 I
e rheMac8.chr4             31219996 245 + 172585720 I

a score=2048.000000
s hg38.chr6_GL000254v2_alt  1859785 2 +   4827813 tt
s panTro5.chr6             30705387 2 + 175400573 gt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129019 2 + 173848474 gt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     635989 2 +   2037526 gt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75311775 2 + 122973662 tt
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1     797682 2 +   1495729 tt
i macNem1.NW_012012100v1   T 3016 C 0
s chlSab2.chr17            30066117 2 -  71996105 tt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      60856 2 +    779361 tt
i manLeu1.NW_012106264v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            62222 0 -    750284 C
e otoGar3.GL873550           670438 27656 +  18854210 T
e aotNan1.NW_018511496v1        745 334 -    566255 I
e cebCap1.NW_016107755v1    1311550 23 -   1771730 I
e calJac3.chr4             30893416 0 + 171630274 C
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e cerAty1.NW_012002513v1      26995 776 -    811324 I
e macFas5.chr4             30509066 183 - 170955103 I
e rheMac8.chr4             31219996 245 + 172585720 I

a score=106150.000000
s hg38.chr6_GL000254v2_alt  1859787 31 +   4827813 tttttt-----tttttgagacggagtttcgctcttg
s panTro5.chr6             30705389 32 + 175400573 ttgttt----gtttttgagacgcagtttcgctcttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129021 36 + 173848474 ttgtttgtttgtttttgagacgcagtttcgctcttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     635991 29 +   2037526 tttttt-------tttgagacggagtttcgctcttg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75311777 31 + 122973662 tttttt-----tttttgagacagagtttcgctcttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31220241 31 + 172585720 tttttc-----tttttgagacagagtttcgctcttg
i rheMac8.chr4             I 245 C 0
s macFas5.chr4             30509249 31 - 170955103 tttttc-----tttttgagacagagtttcgctcttg
i macFas5.chr4             I 183 C 0
s macNem1.NW_012012100v1     797684 31 +   1495729 tttttt-----tttttgagacggagtttcgctcttg
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30066119 31 -  71996105 tttttt-----tttttgagacagagtttcgctcttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      60858 31 +    779361 tttttt-----tttttgagacggagtttcgctcttg
i manLeu1.NW_012106264v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            62222  0 -    750284 C
e otoGar3.GL873550           670438 27656 +  18854210 T
e aotNan1.NW_018511496v1        745 334 -    566255 I
e cebCap1.NW_016107755v1    1311550 23 -   1771730 I
e calJac3.chr4             30893416  0 + 171630274 C
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e cerAty1.NW_012002513v1      26995 776 -    811324 I

a score=228646.000000
s hg38.chr6_GL000254v2_alt  1859818 54 +   4827813 ccgctgcccaggctatagtgcaatggcgccatctcggctcaccgcaacttccgc
s panTro5.chr6             30705421 54 + 175400573 ccgctgcccaggctatagtgcaatggcgccatctcggctcaccgcaacttccgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129057 54 + 173848474 ccgctgcccaggctatagtgcaatggcgccatctcggctcaccgcaacttctgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636020 54 +   2037526 ccgctgctcaggctatagtgcaatggcgccatctcggctcaccgcaacccccgc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75311808 54 + 122973662 ctgctgcccaggctatagtgcaatggtgccatctcggctcaccgcagcctccgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31220272 54 + 172585720 ctgctgccccggctagtgtgcaatggcgccatctcggctcaccgcaacctccgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30509280 54 - 170955103 ctgctgccccggctagtgtgcaatggcgccatctcggctcaccgcaacctccgc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     797715 54 +   1495729 ctgctgccccggctagagtgcaatggcgccatctcggctcatcgcaacctccac
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30066150 54 -  71996105 ctgctgccccggctagagtgcaatggcgccatctcagctcaccgcaacctccgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      60889 54 +    779361 ctgctgccccggctagagtgcaatggcgccatctcggctcaccgcaacctccgc
i manLeu1.NW_012106264v1   C 0 C 0
s otoGar3.GL873550           642782 54 +  18854210 ctgttgcccaggctggagtttagtggctccatcatatcttactgcagccttgaa
i otoGar3.GL873550         T 27656 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            62222  0 -    750284 C
e aotNan1.NW_018511496v1        745 334 -    566255 I
e cebCap1.NW_016107755v1    1311550 23 -   1771730 I
e calJac3.chr4             30893416  0 + 171630274 C
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e cerAty1.NW_012002513v1      26995 776 -    811324 I

a score=633704.000000
s hg38.chr6_GL000254v2_alt  1859872 128 +   4827813 ctcccaggttcaagcgattctcctgcctcagcctcccgagtagcttgta------------------------------ttacaggcatgcgccaccacacccggctaattttgtatttttagtagagaggggg-tttctccatgttgttcaggctggt
s panTro5.chr6             30705475 129 + 175400573 ctcccaggttcaagcgattctcctgcctcagcctcccgagtagcttgta------------------------------ttacaggcatgcgccaccacacccagctagttttgtatttttagtagagaggggggtttctccatgttgttcaggctggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129111 129 + 173848474 ctcccaggttcaagcgattctcctgcctcagcctcccgagtagcttgta------------------------------ttacaggcatgcgccaccacacccagctagttttgtatttttagtagagaggggggtttctccatgttgttcaggctggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636074 128 +   2037526 ctccgaggttcaagcgattctcctgcctcagcctcccgagtagcttgta------------------------------ttacaggcatgcgccaccacacccggctaattttgtatttttagtagagaggggg-tttctccatgttgttcaggctggt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75311862 128 + 122973662 ctcccaggttcaagttattctcctgcctcagcctctcgagtagcttgga------------------------------ttacaggcatgcgccaccacactcggctaattttgtatttttagtagagacggga-tttctccatgttgttcaggctggt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31220326 158 + 172585720 ctcccaggttcaagcaattctcctgcctcagcctcccaagtagctgggattacagtagctgggattacagtagctggggttacaagcatgcgccaccacgcctggctaattttgtatttttagtagagacgggg-tttctccattttggtcaggctggt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30509334 158 - 170955103 ctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggattacagtagctgggattacagtagctggggttacaagcatgcgccaccacgcctggctaattttctatttttagtagagacgggg-tttctccattttggtcaggctggt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     797769 143 +   1495729 ctcccatgttcaagcgattctcttgcctcagcctcccaagtagctgggattacagtagctggga---------------ttacaagcatgcgccaccacgcctggctaattttgtatttttagtagagacgggg-tttctccattttggtcaggctggt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      27771 143 -    811324 ctcccatgttcaagcgattctcctgcctcagcctcccaagtagctgggattacagtagctggga---------------ttacaagcatgcgccaccacgcctggctaattttgtatttttagtagagacgggg-tttctccattttggtcaggctggt
i cerAty1.NW_012002513v1   I 776 C 0
s chlSab2.chr17            30066204 143 -  71996105 ctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggattacagtagctggga---------------ttacaagcatgcgccaccacgcctggctaattttgtatttttagtagagacgggg-tttctccattttggtcaggctggt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      60943 143 +    779361 ctcccatgttcaagcgattctcctgcctcagcctcccaagtagctgggattacagtagctggga---------------ttacaagcatgcgccaccacgcctggctaattttgtatttttagtagagacgggg-tttctccattttggtcaggctggt
i manLeu1.NW_012106264v1   C 0 C 0
s otoGar3.GL873550           642836 120 +  18854210 ttcctgggctcaagcgatccttctccctcaacctccagattagctggga------------------------------ctataggagcatgccaccacaccgagctaattttattt------tagaggtgggg-tctcacaa--ttgcccaggctggA
i otoGar3.GL873550         C 0 I 106
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            62222   0 -    750284 C
e aotNan1.NW_018511496v1        745 334 -    566255 I
e cebCap1.NW_016107755v1    1311550  23 -   1771730 I
e calJac3.chr4             30893416   0 + 171630274 C
e colAng1.NW_012115577v1     717330 12841 -   1829203 I

a score=251258.000000
s hg38.chr6_GL000254v2_alt  1860000 68 +   4827813 ctcgaactcccaacctcaggtgatccgcctgtcttggcctct-caagtgctgggattacaggggtgagc
s panTro5.chr6             30705604 68 + 175400573 ctcgaactcccaacctcaggtgatccgcccgtcttggcctcc-caagtgctgggattacaggcgtgagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129240 68 + 173848474 ctcgaactcccaacctcaggtgatccgcccgtcttggcctcc-caagtgctgggattacaggcgtgagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636202 68 +   2037526 ctcgaactcccaacctcaagtgatccgcccgtcttggcctcc-caagtgctgggattacaggcgtgagc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75311990 69 + 122973662 ctcgaactcccgacctcaggtgatccgcccgcctcagcctccaaaagtgctgggattacaggcgtgagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31220484 63 + 172585720 ctcgaactcccgacctcaagtgatcc-cccgcctcggcctcccaaagtactgggattacaggtg-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30509492 63 - 170955103 ctcgaactcccgacctcaagtgatcc-cccgcctcggcctcccaaagtactgggattacaggtg-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     797912 63 +   1495729 ctcgaactcccgacctcaagtgatgc-cccgcttcggtctcccaaagtactgggattacaggtg-----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      27914 63 -    811324 ctcgaactcccgacctcaagtgatgc-cccgcctcagcctcccaaagtactgggattacaggtg-----
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30066347 63 -  71996105 ctcgaactcccgacctcaagtgatcc-cccgcctcggcctcccaaagtactgggattacaggtg-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      61086 63 +    779361 ctcgaactcccgacctcaagtgatgc-cccgcctcagcctcccaaagtactgggattacaggtg-----
i manLeu1.NW_012106264v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            62222  0 -    750284 C
e otoGar3.GL873550           642956 106 +  18854210 I
e aotNan1.NW_018511496v1        745 334 -    566255 I
e cebCap1.NW_016107755v1    1311550 23 -   1771730 I
e calJac3.chr4             30893416  0 + 171630274 C
e colAng1.NW_012115577v1     717330 12841 -   1829203 I

a score=18391.000000
s hg38.chr6_GL000254v2_alt  1860068 14 +   4827813 caccgcgcccagcc
s panTro5.chr6             30705672 14 + 175400573 caccgcgcccagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129308 14 + 173848474 caccgcgcccagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636270 14 +   2037526 caccgcgcccagcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312059 14 + 122973662 caccgcgcccagcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31220547  3 + 172585720 -----------GCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30509555  3 - 170955103 -----------GCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     797975  3 +   1495729 -----------GCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      27977  3 -    811324 -----------GCC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30066410  3 -  71996105 -----------GCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      61149  3 +    779361 -----------GCC
i manLeu1.NW_012106264v1   C 0 C 0
s otoGar3.GL873550           643062 14 +  18854210 CCCCACTCTCATCC
i otoGar3.GL873550         I 106 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            62222  0 -    750284 C
e aotNan1.NW_018511496v1        745 334 -    566255 I
e cebCap1.NW_016107755v1    1311550 23 -   1771730 I
e calJac3.chr4             30893416  0 + 171630274 C
e colAng1.NW_012115577v1     717330 12841 -   1829203 I

a score=6326.000000
s hg38.chr6_GL000254v2_alt  1860082 2 +   4827813 -GG
s panTro5.chr6             30705686 2 + 175400573 -GG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129322 2 + 173848474 -GG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636284 2 +   2037526 -GG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312073 2 + 122973662 -GG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31220550 2 + 172585720 -GG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30509558 2 - 170955103 -GG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     797978 2 +   1495729 -GG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      27980 2 -    811324 -GG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30066413 2 -  71996105 -GG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      61152 2 +    779361 -GG
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30893416 2 + 171630274 -GA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            62222 2 -    750284 -GA
i saiBol1.JH378327         C 0 C 0
s otoGar3.GL873550           643076 2 +  18854210 CA-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1        745 334 -    566255 I
e cebCap1.NW_016107755v1    1311550 23 -   1771730 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I

a score=296044.000000
s hg38.chr6_GL000254v2_alt  1860084 38 +   4827813 GAGCCCCTA-TTTTAAGGACGCTATTGCTG-TGGAGGAGT
s panTro5.chr6             30705688 38 + 175400573 GAGCCCCTA-TTTTAAGGACGCTATTGCTG-TGGAGGAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129324 38 + 173848474 GAGCCCCTA-TTTTAAGGACGCTATTGCTG-TGGAGGAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636286 38 +   2037526 GAGCCCCTA-TTTTAAGGACGCTATTGCTG-TGGAGGAGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312075 38 + 122973662 GAGCCCCTA-TTTTAAGGACGCTATTGCTG-TGGAGGAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31220552 38 + 172585720 GCGCCCCTA-TTTTAAGGACGCTATTGCTT-TGGAGGAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30509560 38 - 170955103 GCGCCCCTA-TTTTAAGGACGCTATTGCTT-TGGAGGAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     797980 38 +   1495729 GAGCCCCTA-TTTTAAGGACGCTATTGCTG-TGGAGGAGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      27982 38 -    811324 GCGCCCCTA-TTTTAAGGACGCTATTGCTG-TGGAGGAGT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30066415 38 -  71996105 GCGCCCCTA-TTTTAAGGACGCTATTGCTG-TGGAGGAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      61154 38 +    779361 GCGCCCCTA-TTTTAAGGACGCTATTGCTG-TGGAGGAGT
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30893418 39 + 171630274 GAGCCCCTA-TTTTAAGGATGCTACTGCAGTTGGAGAAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            62224 39 -    750284 GAGCCCCTA-TTTTCAGGATGCTACTGCAGTTGGAGAAGG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1311573 39 -   1771730 GAGCCCCTA-TTTTAAGGATGCTAGTGTAGTTGGAGAAGG
i cebCap1.NW_016107755v1   I 23 C 0
s otoGar3.GL873550           643078 39 +  18854210 GAACTCCTATTTTTAAGAACATTGTTGCTG-TGGAGGAGA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1        745 334 -    566255 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I

a score=588336.000000
s hg38.chr6_GL000254v2_alt  1860122 71 +   4827813 AACCCCACTTTTAGGAATCCTTTTCC---GTGCGAAAGGCTGTTTGAGATCAGGCGCAACAACTTCTCCCGCTC
s panTro5.chr6             30705726 71 + 175400573 AACCCCACTTTTAGGAATCCTTTTCC---GTGCGAAAGGCTGTTTGAGATCAGGCGCAACAACTTCTCCCGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129362 71 + 173848474 AACCCCACTTTTAGGAATCCTTTTCC---GTGCGAAAGGCTGTTTGAGATCAGGCGCAACAACTTCTCCCGCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636324 71 +   2037526 AACCCCACTTTTAGGAATCCTTTTCC---GTGCGAAAAGCTGTTTGAGATCAGGCGCAACAACTTCTCCCGCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312113 71 + 122973662 AACCCCACTTTCAGGAGTCCTTTTCC---GTGCGAAAGGCTGTTTGAGATCAGGCGCAACAACTTCTCCCGCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31220590 68 + 172585720 AACCCCTCTTTTAGGAATCCTTTTCC---TTGCGAAAGGCAATTTGAGATCAGGCGCTACAA---CTCCCGCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30509598 68 - 170955103 AACCCCTCTTTTAGGAATCCTTTTCC---TTGCGAAAGGCAATTTGAGATCAGGCGCTACAA---CTCCCGCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     798018 68 +   1495729 AACCCCACTTTTAGGAATCCTTTTCC---TTGCGAAAGGCAATTTCAGATCAGGCGCTACAA---CTCCCGCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      28020 68 -    811324 AACCCCACTTTTAGGAATCCTTTTCC---TTGCGAAAGGCAATTTGAGATCAGGCGCTACAA---CTCTCGCTC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30066453 68 -  71996105 AACCCCACTTTTAGGAATCCTTTTCC---TTGCAAAAGGCAATTTGAGATCAGGCGCTACAA---CTCCCGCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      61192 68 +    779361 AACCCCACTTTTAGGAATCCTTTTCC---TTGCGAAAGGCAATTTGAGATCAGGCGCTACAA---CTCTCGCTC
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30893457 70 + 171630274 AACCCCACTTTTAGGAATCCTCTTCC---GTGCAAAAGGCTGTCTGAGATCAGGCGCAAAAAA-CCTCCCGCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            62263 71 -    750284 AACCCCACTTTTAGGAATCCTCTTCC---GTGCCAAAGGCTGTCTGAGATCAGGCGCAGAAACTTCGCCCGCTC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1311612 71 -   1771730 AACCCCACTTTTAGGAAACCTTTTCC---GTGCAAAAGGCTGTCTGAGATCAGGAGCAAAAGCTTCTCCCGCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       1079 71 -    566255 AACCCCACTTTTAGGAATCCTCTTCC---GTGCAAAAGGCTGTCTGAGATCAGGCGCAAAAACTTCTCCCGCTC
i aotNan1.NW_018511496v1   I 334 C 0
s otoGar3.GL873550           643117 74 +  18854210 AATTTCACTTTTAGGAATACTCCTTCCATATGAAAGAGACTGCTTGAGAAAACTGGCTGTAACTTCTCACACTC
i otoGar3.GL873550         C 0 I 99
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I

a score=796121.000000
s hg38.chr6_GL000254v2_alt  1860193 109 +   4827813 AGGTTACCCTCAGAAA--GGCTATGGACCCCGGACTCCGCCCCAGATTGCATAACAACTGAGGGGTGGGTCCCTATTTCCTCTCTGGGATCTGTAGCCAATCATTCACGAG
s panTro5.chr6             30705797 109 + 175400573 AGGTTACCCTCAGAAA--GGCTATGGACCCCGGACTCCGCCCCAGATTGCATAACAACTGAGGGGTGGGTCCCTATTTCCTCTCTGGGATCTGTAGCCAATCATTCACGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129433 109 + 173848474 AGGTTACCCTCAGAAA--GGCTATGGACCCCGGACTCCGCCCCAGATTGCATAACAACTGAGGGGTGGGTCCCTATTTCCTCTCTGGGATCTGTAGCCAATCATTCACGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636395 109 +   2037526 AGGTTACCCTCAGAAA--GGCTATGGACCCCGGACTCCGCCCCAGATTGCATAACAACTGAGGGGTGGGTCCCTATTTCCTCTCTGGGATCTGTAGCCAATCATTCACGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312184 109 + 122973662 AGGTTACCCTCAGAAA--GGCTATGGACCCCGGACTCCGCCCCAGATTGCATAACAACTGAGGGGTGGGTCCCTATTTCCTCTCTGGGATCTGTAGCCAATCATTCACGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31220658 109 + 172585720 AGGTTACCCTTAGAAA--GGCTGTGGACCCTGGACTCCGCCCCGGATTGCATAACAACTGAGGGGTGGATCCCTATTTCCTCTCTGGAATCTGCAGCCAATCGTTCACGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30509666 109 - 170955103 AGGTTACCCTTAGAAA--GGCTGTGGACCCTGGACTCCGCCCCGGATTGCATAACAACTGAGGGGTGGATCCCTATTTCTTCTCTGGAATCTGCAGCCAATCGTTCACGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     798086 109 +   1495729 AGGTTACCCTTAGAAA--GGCTGTGGACCCTGGACTCCGCCCCAGATTGCATAACAACTGAGGGGTGGGTCCCTATTTCCTCTCTGGAATCTGCAGCCAATCGTTCACGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      28088 109 -    811324 AGGTTACCCTTAGAAA--GGCTGTGGACCCTGGACTCCGCCTCAGATTGCATAACAACTGAGGGGTGGGTCCCTATTTCCTCTCTGTAATCTGCAGCCAATCGTTCACGAG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30066521 109 -  71996105 AGGTTACCCTTAGAAA--GGCTGTGGACCCTGGACTCCGCCCCAGATTGCATAACAACTGAAGGGTGGGTCCCTAGTTCCTCTCTGGAATCTGCAGCCAATCGTTCACGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      61260 109 +    779361 AGGTTACCCTTAGAAA--GGCTGTGGACCCTGGACTCCGCCTCAGATTGCATAACAACTGAGGGGTGGGTCCCTATTTCCTCTCTGTAATCTGCAGCCAATCGTTCACGAG
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30893527  98 + 171630274 AGGTTACCCTACG-----GGCTCGTTACCCCGGACTCCGCCCCCGATTGCAAAACAACTGAGGGGTGGATCCTTATTTTCCCTTC--------TACTCGCTTGTTCTCGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            62334 103 -    750284 AGGTTACCCTACAGTACCGGCTGTGTACCCCGGACTCCGCCCCCGATTGCAAAACAGCTGAGGGGTGGGTCCTTATTTTCCCGCC--------TACTCACTAGTTCTCGAG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1311683 103 -   1771730 AGGTTACCCTACAGTATGGGCTGTGTACCCCGGACTCCGCCCCCGATTGCAAAACAGCTGAGGGGCGGGTCCTTATTTCCCCTCC--------TACTCACTTGTTCTCGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       1150 103 -    566255 AGGTTACCCTACAGTACGGGCTGCGTACCCCGGACTCCGCCCCCGATTGCAAAACAGATGAGGGGTGGGTCCTTATTTTCCCCCC--------TACTCATTTGTTCTCGAG
i aotNan1.NW_018511496v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           643191  99 +  18854210 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I

a score=1538934.000000
s hg38.chr6_GL000254v2_alt  1860302 180 +   4827813 GTAAACAGAACGACCGAGTTTCTCTCAGCCGAGAACTGTGGCTGCCCCTCCGGTGAAAACA--GAGGAAGTGGGAGCGGCAGGAAGCGCTTTGGGACCAGGGCGACCCCTGAAGCGT---AGAGGAACCAGGTCACAAGCATACGTGAATGCTCACATTCCATAGTTATCAAATGTATTCAGGTT
s panTro5.chr6             30705906 180 + 175400573 GTAAACAGAACGACCGAGTTTCTCTCAGCCGAGAACTGTGGCTGCCCCTCCGGTGAAAACA--GAGGAAGTGGGAGCGGCAGGAAGCGCTTTGGGACCAGGGCGACTCCTGAAGCGT---AGAGGAACCAGGTCACAAGCATACGTGAATGCTCACATTCCATAGTTATCAAATGTATTCAGGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129542 180 + 173848474 GTAAACAGAACGACCGAGTTTCTCTCAGCCGAGAACTGTGGCTGCCCCTCCGGTGAAAACA--GAGGAAGTGGGAGCGGCAGGAAGCGCTTTGGGACCAGGGCGACCCCTGAAGCGT---AGAGGAACCAGGTCACAAGCATACGTGAATGCTCACATTCCATAGTTATCAAATGTATTCAGGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636504 180 +   2037526 GTAAACAGAACGACCGAGTTTCTCTCAGCCGAGAACTGTGGCTGCCCCTCCGGTGAAAACA--GAGGAAGTGGGAGCGGCAGGAAGCGCTTTGGGACCAGGGCGACCCCTGAAGCGT---AGAGGAACCAGGTCACAAGCATACGTGAATGCTCACATTCCATAGTTATCAAATGTATTCACGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312293 180 + 122973662 GTAAACAGAACGACCGAGTTTCTCTCAGCCGAGAACTGTGGCTGCCCCTCCGGTGAAAACA--GAGGAAGTGGGAGCGGCAGGAAGCGCTTTGGGATCAGGGCGATCCCTGGAGCGT---AGACTAACCAGGTCACAAGCATACGTGAATGCTCAAATTCCATAGTTATCAAATGTATTCAGGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31220767 180 + 172585720 GTAAACAGAACAACCGAGCTTCTCTCAGCGGAGAACTGTGGCTGCCCTTCCGGTGAAAACA--GAGGAAGTGGGAGCGGCGGGAAGCGCTTTGGGATCAGGGCGACCCCTGGAGCGT---AGAGTAACCAGGTCACAAGCATACGGGACTGTTCAGATTCCATAGTTATCAAATGTATTCAGGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30509775 180 - 170955103 GTAAACAGAACAACCGAGCTTCTCTCAGCGGAGAACTGTGGCTGCCCTTCCGGGGAAAACA--GAGGAAGTGGGAGCGGCGGGAAGCGCTTTGGGATCAGGGCGACCCCTGGAGCGT---AGAGTAACCAGGTCACAAGCATACGGGACTGTTCAGATTCCATAGTTATCAAATGTATTCAGGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     798195 180 +   1495729 GTAAACAGAACAACCGCGCTTCTCTCAGCGGAGAACTGTGGCTGCCCTTCCGGTGAAAACA--GAGGAAGTGGGAGCGGCGGGAAGCGCTTTGGGATCAGGGCGACCCCTGGAGTGT---AGAGTAACCAGGTCACAAGCATACGGGACTGTTCAGATTCCATAGTTATCAAATGTATTCAGGTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      28197 180 -    811324 GTAAACAGAACAACCGCGCTTCTCTCAGCGGAGAACTGTGGCTGCCCTTCCGGTGAAAACA--GAGGAAGTGGGAGCGGCGGGAAGCGCTTTGGGATCAGGGTGACCCCTGGAGCGT---AGAGTAACCAGGTCACAAGCATACGGGACTGTTCAGATTCCATAGTTATCAAATGTATTCAGGTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30066630 180 -  71996105 GTAAACAGAACAACCGAGCTTCTCTCAGCGGAGAACTGTGGCTGCCCTTCCGGTGAAAACA--GAGGAAGTGGGAGCGGCGGGAAGCGCTTTGGGATCAGGGCGACCCCTGGAGCGT---AGAGTAACCAGGTCACAAGCATACGGGACTGTTCAGATTCCATAGTTATCAAATGTATTCAGGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      61369 180 +    779361 GTAAACAGAACAACCGCGCTTCTCTCAGCGGAGAACTGTGGCTGCCCTTCCGGTGAAAACA--GAGGAAGTGGGAGCGGCGGGAAGCGCTTTGGGATCAGGGTGACCCCTGGAGCGT---AGAGTAACCAGGTCACAAGCATACGGGACTGTTCAGATTCCATAGTTATCAAATGTATTCAGGTT
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30893625 179 + 171630274 GTAAACAGAACCACCGAGTTCCTCTCAGCGGACAACTGTAGCTGACCTTCCGGTGAAAAC---GAGGATGTGGGAGCGGCGGGGAGCGCGTGAGGATCAGGGCGACCGCTAAGGCGT---AGAATAACCAGGTCAGAAGCAAACGTGAATGCTCAAATTCCATAATTATCAAATGTACTCAGATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            62437 158 -    750284 GTAAAC--AACCACCGAGGTCCTCTCGGCGGAGAACTGTGGCCGCCCATCCGGTGAAAACA--GAGGATGTGGGAGCGGCGGGGAACGCGTGAGG--------------------GT---AGAGTAACCAGGTCACAAGCAAACGTGAATGCTCAAACTCCCTAATTATCCAATGGATTCAGGTG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1311786 183 -   1771730 GTAAACAGAAACACTGAGTTCCTCTTAGCCGAGAACTGTGGCCGCCCATCCGGTGAAAACA--GAGTATGTGGGAGCGGCGGGGAGCGCATGAGGATCAGGGCGACCGCTAAAGCGTAGGAGAATAACCAGGTCACAAGCATACGTGAATGCTCAAATTCCATAATCATCAAATGTATTCAGATT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       1253 175 -    566255 GTAAACAGAACCACCGAGTTCCTCTCGGC---GAACTGTGGCCGCTCATCCGGTGAAAAC----AGGATGTGGGAGCGGCGGGGAGCGCGCGAGGATGAGGGCGACCGCTAAGGCGT---AGAGTAACCAGGTCACAAACATACGTGAATGCTCAAATTCCATAATTATCAAAGGTATTCAGGTT
i aotNan1.NW_018511496v1   C 0 I 302
s otoGar3.GL873550           643290 168 +  18854210 ATAAACAGAAAGACTGAGTTCCT-------GGGAAATGTGG-TGCCCACTGGGTGAAAGAAGGGAGTACATGGGAGCCATGA-----GCATAGGGACCA-GGTGATCCCTTGGGCCT---AGTGTAACCAGGTCACAAGCATGCATAAATACTCAAATTCCATAGTAATCAAACGTATGCAAATT
i otoGar3.GL873550         I 99 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I

a score=136590.000000
s hg38.chr6_GL000254v2_alt  1860482 13 +   4827813 TAAATTTTACTTT
s panTro5.chr6             30706086 13 + 175400573 TAAATTTTACTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129722 13 + 173848474 TAAATTTTACTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636684 13 +   2037526 TAAATTTTACTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312473 13 + 122973662 TAAATTTTACTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31220947 13 + 172585720 TAAATTTTACTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30509955 13 - 170955103 TAAATTTTACTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     798375 13 +   1495729 TAAATTTTACTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      28377 13 -    811324 TAAATTTTACTTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30066810 13 -  71996105 TAAATTTTACTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      61549 13 +    779361 TAAATTTTACTTT
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30893804 13 + 171630274 TAAATTTTACTTT
i calJac3.chr4             C 0 I 1
s saiBol1.JH378327            62595 13 -    750284 TAAATTTTACTTT
i saiBol1.JH378327         C 0 I 1
s cebCap1.NW_016107755v1    1311969 13 -   1771730 TAAATTTTACTTT
i cebCap1.NW_016107755v1   C 0 I 299
s aotNan1.NW_018511496v1       1730 13 -    566255 TAAATTTTACTTT
i aotNan1.NW_018511496v1   I 302 C 0
s otoGar3.GL873550           643458 13 +  18854210 TAAAGTTTAGTTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I

a score=-10363.000000
s hg38.chr6_GL000254v2_alt  1860495 2 +   4827813 TC
s panTro5.chr6             30706099 2 + 175400573 TC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129735 2 + 173848474 TC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636697 2 +   2037526 TC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312486 2 + 122973662 TC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31220960 2 + 172585720 TG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30509968 2 - 170955103 TG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     798388 2 +   1495729 TG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      28390 2 -    811324 TG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30066823 2 -  71996105 TG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      61562 2 +    779361 TG
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30893818 1 + 171630274 C-
i calJac3.chr4             I 1 I 291
s saiBol1.JH378327            62609 1 -    750284 C-
i saiBol1.JH378327         I 1 I 296
s aotNan1.NW_018511496v1       1743 1 -    566255 T-
i aotNan1.NW_018511496v1   C 0 I 1
s otoGar3.GL873550           643471 2 +  18854210 TG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e cebCap1.NW_016107755v1    1311982 299 -   1771730 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I

a score=141640.000000
s hg38.chr6_GL000254v2_alt  1860497 19 +   4827813 TAG-AAAAA-ATGTAAATAAT
s panTro5.chr6             30706101 19 + 175400573 TAG-AAAAA-ATGTAAATAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129737 19 + 173848474 TAG-AAAAA-ATGTAAATAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636699 18 +   2037526 TTG--AAAA-ATGTAAATAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312488 19 + 122973662 TAG-AAAAA-ATGTAAATAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31220962 20 + 172585720 TAGAAAAAA-ATGTAAATAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30509970 20 - 170955103 TAGAAAAAA-ATGTAAATAAT
i macFas5.chr4             C 0 I 317
s macNem1.NW_012012100v1     798390 20 +   1495729 TAAGAAAAA-ATGTAAATAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      28392 20 -    811324 TAGAAAAAA-ATGTAAATAAT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30066825 20 -  71996105 TAGAGAAAA-ATGTAAATAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      61564 20 +    779361 TAGAAAAAA-ATGTAAATAAT
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30894110 15 + 171630274 TAG-AAAAA-----ATGTAAT
i calJac3.chr4             I 291 C 0
s saiBol1.JH378327            62906 20 -    750284 TAG-AAAAAAATGTAAATAAT
i saiBol1.JH378327         I 296 C 0
s cebCap1.NW_016107755v1    1312281 19 -   1771730 TAG-AAAAA-ATGTAAATAAT
i cebCap1.NW_016107755v1   I 299 C 0
s aotNan1.NW_018511496v1       1745 19 -    566255 TAG-AAAAA-ATGTAAATAAT
i aotNan1.NW_018511496v1   I 1 C 0
s otoGar3.GL873550           643473 18 +  18854210 TAG--AAAA-ATGTAAACAAT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I

a score=9572.000000
s hg38.chr6_GL000254v2_alt  1860516 3 +   4827813 CCG-
s panTro5.chr6             30706120 3 + 175400573 CCG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129756 3 + 173848474 CCG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636717 3 +   2037526 CAG-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312507 3 + 122973662 CCG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31220982 3 + 172585720 CCT-
i rheMac8.chr4             C 0 I 317
s macFas5.chr4             30510307 3 - 170955103 CCT-
i macFas5.chr4             I 317 C 0
s macNem1.NW_012012100v1     798410 3 +   1495729 CCT-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      28412 3 -    811324 CCT-
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30066845 3 -  71996105 CCT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      61584 3 +    779361 CCT-
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30894125 3 + 171630274 CTG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            62926 3 -    750284 CCG-
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1312300 3 -   1771730 CCG-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       1764 3 -    566255 CCG-
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           643491 3 +  18854210 -CGG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I

a score=1009008.000000
s hg38.chr6_GL000254v2_alt  1860519 118 +   4827813 TTGAGAATATTTAATGAAAAATGTTGGTCGTATCTTTATCTGGTCTGCGGCTCTGTCCCTGTTTCCTGGATAGGAGACTACGTCTGTATCTTGTATCACAGGAGGCACCTT-CTTCCTG------------
s panTro5.chr6             30706123 118 + 175400573 TTGAGAATATTTAATGAAAAATGTTGGTCGTATGTTTATCTGGTCTGCGGCTCTGTCCCTGTTTCCTGGATAGGAGACTACGTCTGTATCTTGTATCACAGGAGGCACCTT-CTTCCTG------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129759 118 + 173848474 TTGAGAATATTTAATGAAAAATGTTGGTCGTATGTTTATCTGGTCTGCGGCTCTGTCCCTGTTTCCTGGATAGGAGACTACGTCTGTATCTTGTATCACAGGAGGCACCTT-CTTCCTG------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636720 118 +   2037526 TTGAGAATATTTAATGAAAAATGTTGGTCGTATCTTTATCTGGTCTGCGGCTCTGTCCCTGTTTCCTGGATAGGAGACTACGTCTGTATCTTGTATCACAGGAGGCACCTT-CTTCCTG------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312510 118 + 122973662 TTGAGAACATTTAATGAAAAATGTTGGTCGTATCATTATCTGGTCTGCGGCTCTGTCCCTGTTTCCTGGATAGGAGACTACGTCTGTATGTTGTATCACAGGAGGCACCTT-CTTCCTG------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31221302 118 + 172585720 TTGAGAAAATTTAATGAGAAATGTTGGCCGTATCTTTATCTGGTCTGCGGCTCTGTCCCTGTTTCCTGGATAGGAGACTACGTCTGTATCTTGTATCACAGGAGGCACCTT-CTTCCTG------------
i rheMac8.chr4             I 317 C 0
s macFas5.chr4             30510310 118 - 170955103 TTGAGAAAATTTAATGAGAAATGTTGGCCGTATCTTTATCTGGTCTGCGGCTCTGTCCCTGTTTCCTGGATAGGAGACTACGTCTGTATCTTGTATCACAGGAGGCACCTT-CTTCCTG------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     798413 118 +   1495729 TTGAGAACATTTAATGAGAAATGTTGGCCGTATCTTTATCTGGTCTGCGGCTCTGTCCCTGTTTCCTGGATAGGAGACTACGTCTGTATCTTGTATCACAGGAGGCACCTT-CTTCCTG------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      28415 118 -    811324 TTGAGAATATTTAATGAGAAATGTTGGCCGTATCTTTATCTGGTCTGCGGCTCTGTCCCTATATCCTGGGTAGGAGACTACATCTGTATCTTGTATCACAGGAGGCACCTT-CTTCCTG------------
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30066848 118 -  71996105 TTGAGAACATTTAATGAGAAATGTTGGCCGTATCTTTATCTGGTCTGCGGCTCTGTCCCTGTTTCCTGGATAGGAGACTACGTCTGTATCTTGTATCACAGGAGGCACCTT-CTTCCTG------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      61587 118 +    779361 TTGAGAATATTTAATGAGAAATGTTGGCCGTATCTTTATCTGGTCTGCGGCTCTGTCCCTATATCCTGGGTAGGAGACTACATCTGTATCTTGTATCACAGGAGGCACCTT-CTTCCTG------------
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30894128 108 + 171630274 TTGAGAACATTTAATGAGAAAT-------GGATCTTTATCGGGTCTGCGTCTCTGTCCCTGCTTCCTGAAT-AGGGACTACGCCTC--TTTTATATCACAGGAGGCACCTT-CTTCCTG------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            62929 111 -    750284 TTGAGAACATTTAATGAGAAAT-------GGATCTTTATCGGGTCTGTGTCTCTGTCCCTGTTTCCTGAATAAGGGACTACGCCTCTATTTTATATCAGAGGAGGTACCTT-CTTCCTG------------
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1312303 111 -   1771730 TTGAGAACATTTAATAAGAAAT-------GGATCTTTATCGGGTCTGCGTCTCTGTCCCTGTTTCCTGAATAGAGGACCACCCCTCTATTTTGTATCACAGGAGGCACCTT-CTTCCTG------------
i cebCap1.NW_016107755v1   C 0 I 87
s aotNan1.NW_018511496v1       1767 111 -    566255 TTGAGAACATTTAATGAGAAAT-------GGATCTTTATCGGGTCTGCGTCTCTGTCCCTGTTTCCTGAATAGGGGACTACGCCTCTATTTTATATCACAGGAGGCACCTT-CTTCCTG------------
i aotNan1.NW_018511496v1   C 0 I 93
s otoGar3.GL873550           643494 128 +  18854210 TTGAGAACATTTAATGAG-AATGCTGGTCAAGTCCTATTCGCGGGTG-GCATCTAT-CCTGTATCCTTCACAGGGTACCTTGTCCGAATCTTGTATCACAGGAAGCATTTTGCCTCCTGCTTGCTCTCTTG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I

a score=296838.000000
s hg38.chr6_GL000254v2_alt  1860637 58 +   4827813 TTTCCTG--------------GCACAGACTTGTAAGTGAATTTCCTGCCCGC-----------CTCCGCCCACAGCG------TAAGCC
s panTro5.chr6             30706241 58 + 175400573 TTTCCTG--------------GCACAGACTTGTAAGTGAATTTCCTGCCCGC-----------CTCCGCCCACAGCG------TAAGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129877 58 + 173848474 TTTCCTG--------------GCACAGACTTGTAAGTGAATTTCCTGCCCGC-----------CTCCGCCCACAGCG------TAAGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636838 58 +   2037526 TTTCCTG--------------GCACAGACTTGTAAGTGAATTTCCTGCCCGC-----------CTCCGCCCACAGCC------TAAGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312628 58 + 122973662 TTTACTG--------------ACACAGACTTGTAAGTGAATTTCCTGCCCGC-----------CTCCGCCCACAGTG------TAAGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31221420 71 + 172585720 CTTGCTGGCC-GTACAGCTGTGCAGAAACTTGCAAGTGAATTTCCTGCCGGC-----------CTCCACCCACAGTG------TAAGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30510428 71 - 170955103 CTTGCTGGCC-GTACAGCTGTGCAGAAACTTGCAAGTGAATTTCCTGCCGGC-----------CTCCACCCACAGTG------TAAGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     798531 72 +   1495729 CTTGCTGGCCTTTACAGCTGTGCAGAAACTTGCAAGTGAATTTCCTGCCCGC-----------CTCCACCCACAGTG------TAAGCC
i macNem1.NW_012012100v1   C 0 I 14872
s cerAty1.NW_012002513v1      28533 72 -    811324 CTTGCTGGCCTTTACAGCTGTGCACAAACTTGCAAGTGAATTTCCTGCCCGC-----------CTCCACCCACAGTG------TAAGCC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30066966 72 -  71996105 CTTACTGGCCTTTACAGCTGTGCACAAACTTGCAAGTGAATTTCCTGCCCGC-----------CTCCACCCACAGTG------TAAGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      61705 72 +    779361 CTTGCTGGCCTTTACAGCTGTGCACAAACTTGCAAGTGAATTTCCTGCCCGC-----------CTCCACCCACAGTG------TAAGCC
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30894236 73 + 171630274 ----CTGGCTGTGACAGCTGCGCACAAACTGGCTAGTGAATTTCCTGCACAG-CCCTCCTTGGCTTCGCCCACAGCA------T-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            63040 74 -    750284 ----CTGGCTGTGACAGCTGCGCACAAACTGGCTAGTAAATTTCCTGCCCAGATCTTCTTTTGCTTCCCCCACAGCA------T-----
i saiBol1.JH378327         C 0 C 0
s otoGar3.GL873550           643622 76 +  18854210 CTTCCTG-----TAATAGTGCACATGGCCTTACACGTCAGTTTCCAACCCACACT--------CTTCCCCCACCTCGGCCCACTAAGGC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       1878 93 -    566255 I
e cebCap1.NW_016107755v1    1312414 87 -   1771730 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I

a score=107681.000000
s hg38.chr6_GL000254v2_alt  1860695 24 +   4827813 GCGCTGGAACAGCTCACTTATTGC
s panTro5.chr6             30706299 24 + 175400573 GCGCTGGAACAGCTCACTTATTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129935 24 + 173848474 GCGCTGGAACAGCTCACTTATTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636896 24 +   2037526 TCGCTGGAACAGCTCACTTATTGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312686 24 + 122973662 TCGCTGGAACAGCTCACTTATTGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31221491 24 + 172585720 TCGCTGGAACAGCTTACTTATTGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30510499 24 - 170955103 TCGCTGGAACAGCTTACTTATTGC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      28605 24 -    811324 TCGCTGGAACAGCTTACTTATTGC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30067038 24 -  71996105 TCGCTGGAACAGCTTACTTATTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      61777 24 +    779361 TCGCTGGAACAGCTTACTTATTGC
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30894309  9 + 171630274 ---------------GCTTATTGC
i calJac3.chr4             C 0 I 4
s saiBol1.JH378327            63114  9 -    750284 ---------------ACTTATTGC
i saiBol1.JH378327         C 0 I 4
s otoGar3.GL873550           643698 22 +  18854210 TAGCTCAAACTGT--GCTCATTGC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       1878 93 -    566255 I
e cebCap1.NW_016107755v1    1312414 87 -   1771730 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I

a score=44015.000000
s hg38.chr6_GL000254v2_alt  1860719 8 +   4827813 CCCAGATG
s panTro5.chr6             30706323 8 + 175400573 CCCAGATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129959 8 + 173848474 CCCAGATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636920 8 +   2037526 CCTAGATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312710 8 + 122973662 CCCAGGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31221515 8 + 172585720 CCCAGATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30510523 8 - 170955103 CCCAGATG
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      28629 8 -    811324 CCCAGATG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30067062 8 -  71996105 CCCAGATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      61801 8 +    779361 CCCAGATG
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30894322 6 + 171630274 CCCACA--
i calJac3.chr4             I 4 C 0
s saiBol1.JH378327            63127 8 -    750284 CCCCCATG
i saiBol1.JH378327         I 4 C 0
s cebCap1.NW_016107755v1    1312501 8 -   1771730 CCCACATG
i cebCap1.NW_016107755v1   I 87 C 0
s otoGar3.GL873550           643720 8 +  18854210 CTGAGATG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       1878 93 -    566255 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I

a score=322447.000000
s hg38.chr6_GL000254v2_alt  1860727 39 +   4827813 TATGTGGAGTAACCGCCTT--CAGTTTCCTGGTTCTGAGTT
s panTro5.chr6             30706331 39 + 175400573 TATGTGGAGTAACCGCCTT--CAGTTTCCTGGTTCTGAGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31129967 39 + 173848474 TATGTGGAGTAACCGCCTT--CAGTTTCCTGGTTCTGAGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636928 39 +   2037526 TATGTGGAGTAACCGCCTT--CAGTTTCCTGGTTCTGAGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312718 39 + 122973662 TATGTGGAGTAACCGCCTT--CAGTTTCCTGGTTCTGAGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31221523 39 + 172585720 TATGTGGCGTAACCGCCTT--CAGTTTCCTGGTTCTGAGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30510531 39 - 170955103 TATGTGGCGTAACCGCCTT--CAGTTTCCTGGTTCTGAGTT
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      28637 39 -    811324 TATGTGGCGTAACCGCCTT--CCGTTTCCTGGTTCTGAGTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30067070 39 -  71996105 TATGTGGCGTAACCGCCTT--CAGTTTCCTGGTTCTGAGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      61809 39 +    779361 TATGTGGCGTAACCGCCTT--CCGTTTCCTGGTTCTGAGTT
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30894328 39 + 171630274 TATGTGGCCTAACCGGCTT--CAGTTTCCTGGTTCTGAGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            63135 39 -    750284 TATGTGGCCTAACCGGCTT--CAGTTTCCTGGTTCTGAGTT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1312509 39 -   1771730 TATGTGGCCTAACCGGCTT--CAGTTTCCTGGTTCTGAGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       1971 39 -    566255 TATGTGGCCTAACCGGCTT--CAGTTTCCTGGTTCTGAGTT
i aotNan1.NW_018511496v1   I 93 I 612
s otoGar3.GL873550           643728 40 +  18854210 TAAG-GGGGTAACTGCTCTGGTAGTTTCCCCATTCTGAGTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I

a score=17381.000000
s hg38.chr6_GL000254v2_alt  1860766 2 +   4827813 TC
s panTro5.chr6             30706370 2 + 175400573 TC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31130006 2 + 173848474 TC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636967 2 +   2037526 TC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312757 2 + 122973662 TC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31221562 2 + 172585720 TC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30510570 2 - 170955103 TC
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      28676 2 -    811324 TC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30067109 2 -  71996105 TC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      61848 2 +    779361 TC
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30894367 2 + 171630274 TC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            63174 2 -    750284 TC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1312548 2 -   1771730 TC
i cebCap1.NW_016107755v1   C 0 I 886
s otoGar3.GL873550           643768 2 +  18854210 TC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       2010 612 -    566255 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I

a score=841232.000000
s hg38.chr6_GL000254v2_alt  1860768 191 +   4827813 CGTGTTACTCAAGCAATGCTTCTGCTG---------------------------------------------------------------------------------------AAtttgt--ctttttttttttttt--------------gagacagag--tcttgctttgtcgcccagactggagtgaaatggcgtggtctcggctcactgcagcctccacctcctgggttcaagcgagtctcctgcctc-agcctcctgagtgtgcaacttatctttttat----tttatttattta
s panTro5.chr6             30706372 196 + 175400573 CGTGTTACTCAAGCAATGCTTCTGCTG---------------------------------------------------------------------------------------AAtttgt--ctttttttttttttt---------tttttgagacagag--tcttgctttgtcgcccagactggagtgcaatggcgtggtctcggctcactgcagcctccacctcctgggttcaagcgagtcttctgcctc-agcctcccgagtgtggaacttatctttttat----tttatttattta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31130008 191 + 173848474 CGTGTTACTCAAGCAATGCTTCTGCTG---------------------------------------------------------------------------------------AAtttgt--ctttttttttttttg--------------tagacagag--tcttgctttgtcgcccagactggagtgcaatggcgtggtctcggctcactgcagcctccacctcctgggttcaagcgagtcttctgcctc-agcctcccgagtgtggaacttatctttttat----tttatttattta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     636969 209 +   2037526 CGTGTTACTCAAGCAATGCTTCTGCTG---------------------------------------------------------------------------------------AATTTGT--CTATCttttttttttttttttctttttttgagacagag--tcttgctttgtcgcccagactggagtgcaatggcgtggtctcggctcactgcagcctccacctcctgggttcaagggagtctcctgcctc-agcctcccgagtgtggaacttatctttttatttcatttatttattta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312759 201 + 122973662 AGTGTTACTCAAGCAATGCTTCTGCTG---------------------------------------------------------------------------------------AATTTCT--CTAACtttttttttt--------ttttttgagacagag--tcttgctttgtcgcccagactggagtgcagtggtgcggtctcggctcactgcagcctccacctcctgggttcaagcgagtctcctgcatc-agcctcccgagtgtggaacttatctttttatttcgtttatttattta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31221564 193 + 172585720 AGTGTTACTCAGGCAATGCTTCTGCTG---------------------------------------------------------------------------------------AAAAttt--ttttct-ttttcttt----------ttttgagac--ag--tctcactctgtggcccaggctggagtgtagtggcgcggtctcggctcattgcagcctccacctcctgggttcaagcgagtctcctgcctcaagtctcctgagtGTGGAACTTCTCTTtttat----ttcatttattta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30510572 193 - 170955103 AGTGTTACTCAGGCAATGCTTCTGCTG---------------------------------------------------------------------------------------AAAAttt--ttttct-ttttcttt----------ttttgagac--ag--tctcactctgtggcccaggctggagtgtagtggcgcggtctcggctcattgcagcctccacctcctgggttcaagcgagtctcctgcctcaagtctcccgagtGTGGAACttctctttttat----ttcatttattta
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      28678 194 -    811324 AGTGTTACTCAGGCAATGCTTCTGCTG---------------------------------------------------------------------------------------AAAAttt--ttttttgttttcttt----------ttttgagac--ag--tctcactctgtggcccaggctggagtgtagtggcgcggtctcggctcattgcagcctccacctcctgggttcaagcgagtctcctgcctcaagtctcccgagtGTGGAACTTCTCtttttat----ttcatttattta
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30067111 196 -  71996105 AGTGTTACTCAGGCAATGCTTCTGCTG---------------------------------------------------------------------------------------AAAttttggtttttttttttcttt----------ttttgagac--ag--tcttactctgtggcccaggctggagtgtagtggcgcggtctgggctcattgcagcctccacctcctggcttcaagcgagtctcctgcctcaagcctcccgagtGTGGAACttctctttttat----ttcatttattta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      61850 194 +    779361 AGTGTTACTCAGGCAATGCTTCTGCTG---------------------------------------------------------------------------------------AAAAttt--ttttttgttttcttt----------ttttgagac--ag--tctcactctgtggcccaggctggagtgtagtggcgcggtctcggctcattgcagcctccacctcctgggttcaagcgagtctcctgcctcaagtctcccgagtGTGGAACTTCTCtttttat----ttcatttattta
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30894369 171 + 171630274 AGTCTTACTCAAGCA------------------------------------------------------------------------------------------------------------TAAAtt--tctcttt----------ttttgagac--ag--tctcgctctgtcacccaggctggagtacagtggtgcagtcttgacttgctgcagcctccacctcctgggttcaagtgagtctcctgcctt-atcctcctgagtGTGGAACTTCTCTtttta-----tttatttattta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            63176 173 -    750284 AGTCTTACTCAAGCA------------------------------------------------------------------------------------------------------------TAAAtttctctcttt----------ttttgagac--agaatctcgctctgtcaccctggc-ggagcacagtggtgcagtctcggcttcccacagcctccacctccagcgttcaagtgactctcctgcctc-agcctcccgagtGTGGAACTTCt-tattta-----tttatttattta
i saiBol1.JH378327         C 0 I 93
s otoGar3.GL873550           643770 260 +  18854210 AGTTTT----AAGCAGTACTTCCGCTGAGCTCCTTTTATTAACACCTGGAGGATTTAGAGTGCAGTGGGGACCACGTGAGTGAAGGTTGCTGTGGCTTTAATTAAATGGAAGACAATAttt--tttttgttttgcttt-----ttgttttttgagaa-gag--tctcactct-ttgcccaggctggagtgccgtgg---agtcatagctcacaacaacttcaaactactgggcacaggt-accctcctgcctc-agcctcctgagt----agctagactacatg-----------------
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       2010 612 -    566255 I
e cebCap1.NW_016107755v1    1312550 886 -   1771730 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I

a score=4664.000000
s hg38.chr6_GL000254v2_alt  1860959 1 +   4827813 t
s panTro5.chr6             30706568 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31130199 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     637178 1 +   2037526 t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312960 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31221757 1 + 172585720 t
i rheMac8.chr4             C 0 I 187
s macFas5.chr4             30510765 1 - 170955103 t
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      28872 1 -    811324 t
i cerAty1.NW_012002513v1   C 0 I 168
s chlSab2.chr17            30067307 1 -  71996105 t
i chlSab2.chr17            C 0 I 192
s manLeu1.NW_012106264v1      62044 1 +    779361 t
i manLeu1.NW_012106264v1   C 0 I 168
s calJac3.chr4             30894540 1 + 171630274 t
i calJac3.chr4             C 0 I 114
s otoGar3.GL873550           644030 1 +  18854210 c
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            63349 93 -    750284 I
e aotNan1.NW_018511496v1       2010 612 -    566255 I
e cebCap1.NW_016107755v1    1312550 886 -   1771730 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I

a score=26280.000000
s hg38.chr6_GL000254v2_alt  1860960 38 +   4827813 aattttttggctaat-tttggctattttgtgtctgtgtg
s panTro5.chr6             30706569 38 + 175400573 aattttttggctaat-tttggctattttgtgtctgtgtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31130200 38 + 173848474 aattttttggctaat-tttggctattttgtgtctgtgtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     637179 38 +   2037526 aattttttggctaat-tttggctattttatgtctgtgtg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312961 38 + 122973662 aattttttggctaat-tttggctattttgtgtgtgtgtg
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30510766 17 - 170955103 --ttattta-------tttatttatt-------------
i macFas5.chr4             C 0 C 0
s otoGar3.GL873550           644031 33 +  18854210 actggcacgaccaacacctggctaattgttctc------
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            63349 93 -    750284 I
e aotNan1.NW_018511496v1       2010 612 -    566255 I
e cebCap1.NW_016107755v1    1312550 886 -   1771730 I
e calJac3.chr4             30894541 114 + 171630274 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62045 168 +    779361 I
e chlSab2.chr17            30067308 192 -  71996105 I
e cerAty1.NW_012002513v1      28873 168 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e rheMac8.chr4             31221758 187 + 172585720 I

a score=5348.000000
s hg38.chr6_GL000254v2_alt  1860998 2 +   4827813 tg
s panTro5.chr6             30706607 2 + 175400573 tg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31130238 2 + 173848474 tg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     637217 2 +   2037526 tg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75312999 2 + 122973662 tg
i nomLeu3.chr1a            C 0 I 2
s rheMac8.chr4             31221945 2 + 172585720 tg
i rheMac8.chr4             I 187 C 0
s cerAty1.NW_012002513v1      29041 2 -    811324 tg
i cerAty1.NW_012002513v1   I 168 C 0
s manLeu1.NW_012106264v1      62213 2 +    779361 tg
i manLeu1.NW_012106264v1   I 168 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            63349 93 -    750284 I
e otoGar3.GL873550           644064 0 +  18854210 C
e aotNan1.NW_018511496v1       2010 612 -    566255 I
e cebCap1.NW_016107755v1    1312550 886 -   1771730 I
e calJac3.chr4             30894541 114 + 171630274 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e chlSab2.chr17            30067308 192 -  71996105 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30510783 0 - 170955103 C

a score=3276.000000
s hg38.chr6_GL000254v2_alt  1861000 1 +   4827813 t
s panTro5.chr6             30706609 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31130240 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     637219 1 +   2037526 t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75313003 1 + 122973662 t
i nomLeu3.chr1a            I 2 C 0
s rheMac8.chr4             31221947 1 + 172585720 t
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002513v1      29043 1 -    811324 t
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30067500 1 -  71996105 t
i chlSab2.chr17            I 192 C 0
s manLeu1.NW_012106264v1      62215 1 +    779361 t
i manLeu1.NW_012106264v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            63349 93 -    750284 I
e otoGar3.GL873550           644064 0 +  18854210 C
e aotNan1.NW_018511496v1       2010 612 -    566255 I
e cebCap1.NW_016107755v1    1312550 886 -   1771730 I
e calJac3.chr4             30894541 114 + 171630274 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30510783 0 - 170955103 C

a score=305538.000000
s hg38.chr6_GL000254v2_alt  1861001 71 +   4827813 atttttagtagacatggggtttcaccatgttgggcaggctg-------------------------------gtctcgaact----------------------cctgacctcaggtgatccgc
s panTro5.chr6             30706610 71 + 175400573 atttttagtagacatggggtttcaccatgttggtcaggctg-------------------------------gtctcgaact----------------------cctgacctcaggtgatccgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31130241 71 + 173848474 atttttagtagacatggggtttcaccatgttggtcaggctg-------------------------------gtctcgaact----------------------cctgacctcaggtgatccgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     637220 71 +   2037526 atttttagtagacatggggtttcaccatgttggtcaggctg-------------------------------gtctcgaact----------------------cctgacctcaggtgatccgc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75313004 71 + 122973662 atttttagtagacatggggtttcaccatgttggtcaggctg-------------------------------gtctcgaact----------------------cctgacctcaagtgatccac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31221948 71 + 172585720 atttttagtagacatggggtttcaccatgttggtcaggctg-------------------------------gtcttgaact----------------------cctgacctcaggtggtctgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30510783 94 - 170955103 --------tagagacggagtttcactttgtcacccaggctggagtgcagtggcgtgatctcggctcacggcagcctccacct----------------------cccaggttcaaacgattctc
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      29044 71 -    811324 atttttagtagacatggggtttcaccatgttggtcaggctg-------------------------------gtctcgaact----------------------cctgacctcaggtggtctgc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30067501 71 -  71996105 atttttagtagacatggggtttcaccatgttggtcaggctg-------------------------------gtcttgaact----------------------cctgacctcatgtggtctgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      62216 71 +    779361 atttttagtagacatggggtttcaccatgttggtcaggctg-------------------------------gtctcgaact----------------------cctgacctcaggtggtctgc
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30894655 71 + 171630274 atttttcgtagaaatagggtttcaccatgttggttaggctg-------------------------------gtctcaaact----------------------cctgacctcaagcagtccac
i calJac3.chr4             I 114 C 0
s otoGar3.GL873550           644064 89 +  18854210 -tttttagtaaagatgaggtctcac--tcttgctcagacta-------------------------------gtctctaactaagattagggacctagtctctaactgagctcaag-aatcctc
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            63349 93 -    750284 I
e aotNan1.NW_018511496v1       2010 612 -    566255 I
e cebCap1.NW_016107755v1    1312550 886 -   1771730 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I

a score=261200.000000
s hg38.chr6_GL000254v2_alt  1861072 48 +   4827813 ccacctcggcctcccaaagtgctggaattacaggcgtgagccaccgca
s panTro5.chr6             30706681 48 + 175400573 ccacctcggcctcccaaagtgctggaattacaggcgtgagccaccaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31130312 48 + 173848474 ccacctcggcctcccaaagtgctggaattacaggcgtgagccaccaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     637291 48 +   2037526 ccacctcggcctcccaaagtgctgcaattacaggtgtgagccaccgca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75313075 48 + 122973662 ccacctcagcctcccaaagtgttggaattacaggcgtgagccacctcg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31222019 48 + 172585720 ccgcctcagcctcccaaagtgctgggattacaggcatcagccaccacg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30510877 48 - 170955103 ctgcctcagcctcctgagtagctgggattacaggcacaagccacaaca
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      29115 48 -    811324 ccgcctcagcctcccaaagtgctgggattacaggcgttagccaccacg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30067572 48 -  71996105 ctgcctcagcctcccaaagtgctgggattacaggcgtgagccaccacg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      62287 48 +    779361 ccgcctcagcctcccaaagtgctgggattacaggcgttagccaccacg
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30894726 48 + 171630274 ccaccttgccctcccaaagtgctgggattacaggggtgagccaccgca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            63442 48 -    750284 ctgcctcagcctcctgagttcctgggtctataggcacgcacctccacg
i saiBol1.JH378327         I 93 C 0
s otoGar3.GL873550           644153 48 +  18854210 ctaccttggcctcccagagtgttaggattacaggcgtgagtcacTACA
i otoGar3.GL873550         C 0 T 389
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       2010 612 -    566255 I
e cebCap1.NW_016107755v1    1312550 886 -   1771730 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I

a score=514433.000000
s hg38.chr6_GL000254v2_alt  1861120 154 +   4827813 cct----------------------ggccTAtttatttatttatttattt-------------gtgactgagtctcgctctgtca------cccaagctggaatgcaatggcgtgatctcggctcactgctacctccacgccccaagtttaagcaattctcctgcctcagcctcccgagtagctgggactacagg
s panTro5.chr6             30706729 150 + 175400573 cct----------------------ggccTAtttatttatttattt-----------------gtgactgagtctcgctctgtca------cccaagctggaatgcaatggcatgatctcggctcactgctacctccacgccccaagtttaagcaattctcctgcctcagcctcccgagtagctgggactacagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31130360 150 + 173848474 cct----------------------ggccTAtttatttatttattt-----------------gtgactgagtctcgctctgtca------cccaagctggaatgcaatggcgtgatctcggctcactgctacctccacgccccaagtttaagcaattctcctgcctcagcctcccaagtagctgggactacagg
i panPan2.chr6             C 0 I 153
s gorGor5.CYUI01015528v1     637339 150 +   2037526 cct----------------------ggccTAtttatttatttattt-----------------gtgactgagtctcgctctgtca------cccaagctggaatgcactggcgtgatctcggcgcactgctacctccacgccccaagtttaaacaattctcctgcctcagtctcccaagtagctgggactacagg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75313123 154 + 122973662 acc----------------------ggccTAtttatttatttatttattt-------------gtgactgagtctcgctctgtca------cacaagctggaatgcaatggcgtgatctcggctcactgctacctccgcaccccaggtttaagcaattctcctgcctcagcctcccgagtatctgggactacagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31222067 146 + 172585720 ctc----------------------ggccTAtttatttattt---------------------gagacagagtctcactctgtca------cccaagctggaatgcaatggcgtgatctcggcttactgcaacctgcatgccctgggtttaagcaattctcctgcctcagcctcccgagtagctgggactacagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30510925 136 - 170955103 cct----------------------ggctaattttttttttttttttttttgtatttttagtagacatggggtttcaccatgttg------atcaggctgg---------------tcttgaact----------------cctgacctcaggtggtctgcccgcctcagcctcccaaagtgctgggattacagg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      29163 146 -    811324 ccc----------------------ggccTAtttatttattt---------------------tagacagagtttcactctgtca------cccaagctggaatgcaatggcgtgatctcggcttactgcaacctgcatgccccgggtttaagcaattctcctgcctcagcctcccgagtagctggaactacagg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30067620 146 -  71996105 ccc----------------------agccTAtttatttattt---------------------gagacagagtctcactctgtca------cccaagctggaatgcaatggcgtgatctcggcttactgcaacctgcatgccccgggtttaagcaattctcctacctcagccttccgagtagctgggactacagg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      62335 146 +    779361 ccc----------------------ggccTAtttatttattt---------------------tagacagagtttcactctgtca------cccaagctggaatgcaatggcgtgatctcggcttactgcaacctgcatgccccgggtttaagcaattctcctgcctcagcctcccgagtagctggaactacagg
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30894774 172 + 171630274 cccTTTACTTGGAGGttttctttttttcttctttttttttttttttttt--------------gagacagagtctcactctgttgccaggcgctgggctggagtgcagtggctggatctcggttcactgcaacctctgcctactggg---------ttctcctgcctcagcctcccgagcagctgggactacagg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            63490 119 -    750284 tcc----------------------aactaattttttatatttttaata--------------gagatagggtttcaccatgttg------gtcaggctg----gcaaactcctgacctcaa------gcaatc------------------------cacccatcttgccctcccaaagtgctgggattacagg
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           644201 389 +  18854210 T
e aotNan1.NW_018511496v1       2010 612 -    566255 I
e cebCap1.NW_016107755v1    1312550 886 -   1771730 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I

a score=412110.000000
s hg38.chr6_GL000254v2_alt  1861274 143 +   4827813 tgtgcaccaccacatcc--------agctaattttttgtatttttagtagagatggggtttcaccatgttggtcaggctgg---------------tctcgaact----------------cctgacctcaagcgatccacccaccttggcctcccaaagtgttggga-tacaggcgtga-------------------------------------------------------------------------------------------------------------------------------------gcc
s panTro5.chr6             30706879 143 + 175400573 tgtgcaccaccacatcc--------agctaattttttgtatttttagtagagatggggtttcaccatgttggtcaggctgg---------------tctcgaact----------------cctgacctcaagcgatccacccaccttggcctcccaaagtgttggga-tacaggcgtga-------------------------------------------------------------------------------------------------------------------------------------gcc
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     637489 143 +   2037526 tgtgcaccaccacatcc--------agctaattttttgtatttttagtagagatggggtttcaccatgttggtcaggctgg---------------tctcgaact----------------cctgacctcaagcgatccacccaccttggcctcccaaagtgttggga-tacaggcgtga-------------------------------------------------------------------------------------------------------------------------------------gcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75313277 143 + 122973662 cgtgcaccaccacatcc--------agctaattttttgtatttttagtagagatggggtttcaccatgttggtcaggctgg---------------tctcgaact----------------cctgacttcaagcgatccacccgcctcagcctcccaaagtgctggga-tacaagcgtga-------------------------------------------------------------------------------------------------------------------------------------gcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31222213 143 + 172585720 cgtgcaccaccatgttc--------agctaattttttgtatttttagtagatatggggtttcaccatgttggtcaggctgg---------------tctcgaact----------------cccgacctcaagtgatccacccgccttgacctcccaaagtgcttgga-tacaggcgtga-------------------------------------------------------------------------------------------------------------------------------------gcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30511061 168 - 170955103 catcagccaccacgccc--------ggccTAtt-------tatttattcgagacagagtctcactctgtcacccaagctggaatgcaatggcgtgatctcggcttactgcaacctgcatgccctgggtttaagcaattctcctgcctcagcctcccgagtagctgggactacaggcgtgc-------------------------------------------------------------------------------------------------------------------------------------acc
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      29309 143 -    811324 catgcaccaccatgttc--------agctaattttttgtatttttagtagatatggggtttcaccatgttggtcaggctgg---------------tctcgaact----------------cccgacctcaagcgatccacccgccttgacctcccaaagtgcttgga-tacaggcatga-------------------------------------------------------------------------------------------------------------------------------------gcc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30067766 143 -  71996105 cgtgcaccaccatgttc--------agctaattttttgtatttttagtagatatggggtttcaccatgttggtcaggctgg---------------tctcgaact----------------cccgacctcaagcgatccacctgccttgacctcccaaagtgcttgga-tacaggcatga-------------------------------------------------------------------------------------------------------------------------------------gcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      62481 143 +    779361 catgcaccaccatgttc--------agctaattttttgtatttttagtagatatggggtttcaccatgttggtcaggctgg---------------tctcgaact----------------cccgacctcaagcgatccacccgccttgacctcccaaagtgcttgga-tacaggcatga-------------------------------------------------------------------------------------------------------------------------------------gcc
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30894946 141 + 171630274 cacacgccaccacgtcc--------agctaatt-tttgtatttttagtagagacggggtttcaccatgttggccaggatgg---------------tcttcatct----------------cttgac--ctcgtgatccaccctcctcagcctcccaaagtgctgggattacaggcgtga-------------------------------------------------------------------------------------------------------------------------------------gcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            63609 258 -    750284 ggtgagccaccgcaccTTTTATTGGAGGttttc-tttattctttt------------tttttttttttttGGACACTctgg-------------------------------------------gtc--caagcaattgacctgcctcagcctcctgagtagctgggactacaggcatgtggcaccacgcccagctaatttttgtatttttaacagagacggggtttcaccatgttggccaggatggtcttgatctcttgacctcgtgttccgcctgcctcggcctcccaaagtgctggtattacaggcatgagcc
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           644201 389 +  18854210 T
e aotNan1.NW_018511496v1       2010 612 -    566255 I
e cebCap1.NW_016107755v1    1312550 886 -   1771730 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e panPan2.chr6             31130510 153 + 173848474 I

a score=104535.000000
s hg38.chr6_GL000254v2_alt  1861417 48 +   4827813 actgcacctggTTGAATTTC--TCCTTTTAATTG----G-AGGTTTC-Attttatt
s panTro5.chr6             30707022 48 + 175400573 actgcacctggTTGAATTTC--TCCTTTTAATTG----G-AGGTTTC-Attttatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31130663 50 + 173848474 ACTGCACCTGGTTGAATTTC--TCCTTTTAATTG----GTAGGTTTCTAttttatt
i panPan2.chr6             I 153 C 0
s gorGor5.CYUI01015528v1     637632 48 +   2037526 actgcacctggTTGAATTTC--TCCTTTTAATTG----G-AGGTTTC-Attttatt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75313420 48 + 122973662 actgcacctggTTGAACTTC--TCCTTTTAATTG----G-AAGTTTC-Attttatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31222356 48 + 172585720 actgcacctggcTGAACTTC--TCCTTTTAATTG----G-AGGTTTT-ATTTTATt
i rheMac8.chr4             C 0 I 2
s macFas5.chr4             30511229 54 - 170955103 accatgttcagctaattttttgtatttttagtagatatg-gggtttc-accatgtt
i macFas5.chr4             C 0 I 3917
s cerAty1.NW_012002513v1      29452 46 -    811324 actgcacctagcTGAACTTC--TCCTTTTAATTG----G-AGGTTTT-ATTTTA--
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30067909 46 -  71996105 actgcacctgCCTGAACTTC--TCCTTTTAATTG----G-AGGTTTT-ATTTTA--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      62624 46 +    779361 actgcacctggcTGAACTTC--TCCTTTTAATTG----G-AGGTTTT-ATTTTA--
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30895087 24 + 171630274 accacacccagc-------c--ttcttttcttt-----------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            63867 24 -    750284 accacacccagc-------c--ttcttttcttt-----------------------
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           644201 389 +  18854210 T
e aotNan1.NW_018511496v1       2010 612 -    566255 I
e cebCap1.NW_016107755v1    1312550 886 -   1771730 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I

a score=201249.000000
s hg38.chr6_GL000254v2_alt  1861465 59 +   4827813 tttctttattta-tttttttgagacgaagttgcactcttgttgcccaggctagagtgcag
s panTro5.chr6             30707070 59 + 175400573 tttctttattta-tttttttgagacgaagttgcactcttgttgcccaggctagagtgcag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31130713 59 + 173848474 tttctttattta-tttttttgagacgaagttgcactcttgttgcccaggctacagtgcag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     637680 59 +   2037526 tttctttattta-tttttttgagacgaagttgcactcttgttgcccaggctagagtgcag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75313468 59 + 122973662 tttctttattta-tttttttgaggcgaagtcgcactcttgttgcccaggctagagtgcag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31222406 57 + 172585720 tttctttatt---tttttttgagatgaagtcgcaccctggatgcccaggctagagtgcag
i rheMac8.chr4             I 2 I 3738
s cerAty1.NW_012002513v1      29498 59 -    811324 tttatttattta-tttttttgagacgaagtcgcactctggatgcccaggctagagtgcag
i cerAty1.NW_012002513v1   C 0 I 6697
s chlSab2.chr17            30067955 60 -  71996105 tttatttatttatttattttgagatgaagtcacactctggatgcccaggctagagtgcag
i chlSab2.chr17            C 0 I 3736
s manLeu1.NW_012106264v1      62670 60 +    779361 tttatttattttttttttttgagacgaagtcgcactctggatgcccaggctagagtgcag
i manLeu1.NW_012106264v1   C 0 I 3445
s calJac3.chr4             30895111 57 + 171630274 attttttacttt-attttttgagacaatgtc-tgctct-gttgctaaggctggagtgcag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            63891 50 -    750284 attttttacttt-attttttgagacaaggtc-tgctct-gttgctc-------agtgcag
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           644201 389 +  18854210 T
e aotNan1.NW_018511496v1       2010 612 -    566255 I
e cebCap1.NW_016107755v1    1312550 886 -   1771730 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I

a score=9525.000000
s hg38.chr6_GL000254v2_alt  1861524 5 +   4827813 tggcg
s panTro5.chr6             30707129 5 + 175400573 tggcg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31130772 5 + 173848474 tggcg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     637739 5 +   2037526 tggcg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75313527 5 + 122973662 tggca
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30895168 5 + 171630274 tggcg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            63941 5 -    750284 tggcg
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           644201 389 +  18854210 T
e aotNan1.NW_018511496v1       2010 612 -    566255 I
e cebCap1.NW_016107755v1    1312550 886 -   1771730 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I
e rheMac8.chr4             31222463 3738 + 172585720 I

a score=1000477.000000
s hg38.chr6_GL000254v2_alt  1861529 1194 +   4827813 cgatctgggttcactgcaacctctgcctcccagatgcaagtgattctcctgcctcagcctcctgagtagctgggaatacaagcacccaccaccatgcccagttaatttttgtacttttagtagagacaaggttttgccatgttggccagggtggtctcaaactcctgagctcgtgatctgcccacctcagcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggtcTCGTTCTTTAttt-----tttattttattttttgacaccagatctgctctgttactcaggctagagtgcagtggcATtgagaggtgacaacctgctagcagcccttgcttgctcttggcgcctcctcggcctcggtgtctgctctggccgggctcgaggagcccttcagcccactgctgtgctgtgggggcccctctctggggctggctgaggccggagccgtctccctctgcttggggggaggtgtggagggagagacgccagtgggaacaggggctgcgcgtggtgctcccgggccagtggtgttccgggtgggtgcgggctaggcaggccctgcactgggggcaaggttgg-cgtcgcctgctgggcttgat-gggggggtgggggaggagcgccctctgggctgccggagtgcccca-ctaggcgcggcaaagtcccgggagtgccattgagaggtgaagccagctgggcttctgggtctggtggggacttggagaacttttgtgtctagctaaaggattgtaaatgcaccaatcagcactctgtgtctagctaaaggattgtaaacacaccaatcagcactctgtgtctag-----------------------------------------gtaaaggattgtaaacgcaccaatcagcactctgtgtctagctaaaagtttgtaaatgcaccaatcaccactct-gtgtctagctaatctggtggggatttagagaacttttgtgtctagctaaaggattgtaaactcaccaatcagcactctgtgtctagctaaaggattgtaaacacaccaataagcactctgt-----------------------caaaacggaccaatcagctttctgtaaaatgaaccaatcagctctccgtaaaatggaccaatcagctctctgtaaaatagaacaatcagcaggatgtgggtggggccggatgggggaataaaagcaggccacccaagccagcggcggcaacgtgctcgggtcctcttccacaccg
s panTro5.chr6             30707134 1237 + 175400573 cgatctgggttcactgcaacctctgcctcccagatgcaagtgattctcctgcctcagcctcctgagtagctggcaatacaagcacccaccaccatgcccagctaatttttgtacttttagtagagacaaggttttgccatgttggccagggtggtctcaaactcctgagctcgtgatctgcccacctcagcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggtcTCTTTCTTTAttt-----tttattttattttttgacaccagatctgctctgttactcaggctagagtgcagtggcATtgagaggtgacaacctgctagcagcccttgcttgctcttggcgcctccttggcctcggtgtctgctctggccgggctcaaggagcccttcagcccaccgctgtgctgtgggggcccctctctggggctggctgaggccggagctggctccctctgcttggggggaggtgtggagggagagacgccagtgggaacaggggctgcgcgtggtgctcccgggccagtggtgttccgggtgggtgcgggctaggcaggccctgcactgggggcaaggttgg-cgtcgcctgctgggcttgat-gggggggtgggggaggagcaccctttgggctgccggagtgccccagctaggcgcagcaaagtcccgggagtgccattgagaggtgaagccagctgggcttctgggtcgggtggggacttggagaacttttgtgtctagctaaaggattgtaaatgcaccaatcagcactctgtgtctagctaaaggattgtaaacgcaccaatcagcactctgtgtctagctaaaggattgtaaacgcaccaatcagcactctgtgtctaggtaaaggattgtaaacgcaccaatcagcactctgtgtctagctaaaagtttgtaaatgcaccaatcaccactcttgtgtctagctaatctggtggggatttagagaacttttgtgtctagctaaaggattgtaaactcaccaatcagcactctgtgtctagctaaaggattgtaaacacaccaataagcactctgt-----------------------caaaacggaccaatcagctctctgtaaaatgaaccaatcagctctccgtaaaatggaccaatcagctctctgtaaaatacaacaatcagcaggatgtgggtggggccggatgggggaataaaagcaggccacccaagccagctgcggcaatgtgctcgggtcctcttccacactg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31130777 1238 + 173848474 cgatctgggttcactgcaacctctgcctcccagatgcaagtgattctcctgcctcagcctcctgagtagctggcaatacaagcacccaccaccatgcccagctaatttttgtacttttagtagagacaaggttttgccatgttggccagggtggtctcaaactcctgagctcgtgatctgcccacctcagcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggtcTCTTTCTTTAttt-----tttattttattttttgacaccagatctgctctgttactcaggctagagtgcagtggcATtgagaggtgacaacctgctagcagcccttgcttgctcttggcgcctccttggcctcggtgtctgctctggccgggctcaaggagcccttcagcccaccgctgtgctgtgggggcccctctctggggctggctgaggccggagctggctccctctgcttggggggaggtgtggagggagagacgccagtgggaacaggggctgcgtgtggtgctcccgggccagtggtgttccgggtgggtgcgggctaggcaggccctgcactgggggcaaggttgg-cgtcgcctgctgggcttgatggggggggtgggggaggagcaccctttgggctgccggagtgccccagctaggcgcagcaaagtcccgggagtgccattgagaggtgaagccagctgggcttctgggtcgggtggggacttggagaacttttgtgtctagctaaaggattgtaaatgcaccaatcagcactctgtgtctagctaaaggattgtaaacgcaccaatcagcactctgtgtctagctaaaggattgtaaacgcaccaatcagcactctgtgtctaggtaaaggattgtaaacgcaccaatcagcactctgtgtctagctaaaagtttgtaaatgcaccaatcaccactcttgtgtctagctaatctggtggggatttagagaacttttgtgtctagctaaaggattgtaaactcaccaatcagcactctgtgtctagctaaaggattgtaaacacaccaataagcactctgt-----------------------caaaacggaccaatcagctctctgtaaaatgaaccaatcagctctccgtaaaatggaccaatcagctctctgtaaaatacaacaatcagcaggatgtgggtggggccggatgggggaataaaagcaggccacccaagccagctgcggcaatgtgctccggtcctcttccacactg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     637744 1195 +   2037526 cgatctgggttcactgcaacctctgcctcccagatgcaagtgattctcctgcctcagcctcctgagtagctgggaatacaagcacccaccaccatgcccagctaatttttgtacttttagtagagacaaggttttgccatgttggccagggtggtctcaaactcctgagctcgtgatctgcccacctcagcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggtcTCTTTCTTTAttt-----tttattttattttttgacaccagatctgctctgttactcaggctagagtgcagtggcATtgagaggtgacaacctgctagcagcccttgcttgctcttggcgcctcctcggcctcggtgtctgctctggccgggctcgaggagcccttcagcccgccgctgcgctgtgggggcccctctctggagctggctgaggcgggagccggctccctctgctt-gggggaggtgtggagggagagacaccagtgggaacaggggctgcacgtggtgctcccgggccggtggtgttccaggtgggtgcaggctaggcaggccctgcactgggggcgagattgg-cgttgcctgctgggcttgatggggggggtgggggaggagcgccctctgggctgccggagtgccccagctaggcgcggcaaagtcccaggagtgccattgagaggtgaagccagctgggcttctgggtcgggtggggacttggagaacttttgtgtctagctaaaggattgtaaatgcaccaatcagcactctttgtctaggtaaaggattgtaaacgcaccaatcagcactctgtgtctag-----------------------------------------gtaaaggattgtaaatgcaccaatcagcactctgtgtctagctaaaagtttgtaaatgcaccaatcaccactct-gtgtctagctaatctggtggggatttagagaacttttgtgtcttgctaaaggattgtaaactcaccaatcagcactctgtgtctagctaaaggattgtaaacacaccaataagcactctgt-----------------------caaaacggaccaatcagctctctgtaaaatgaaccaatcagctctccataaaatggaccaatcagctctctgtaaaatagaccaatcagcaggatgtgggtggggccggatgggggaataaaagcaggccacccaagccagcggcggcaacgtgctcgggtcctcttccacactg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75313532 1167 + 122973662 cgatctgggctcactgcaacctctgcctcccagatgcaagtgatgctcctgcctcagtctcctgagcagctgggaatacaggcacccaccaccatgcccagctaatttttgtacttttagtagagacaaggttttgccatggtggccagggtggtctcaaactcctgacctcgtgatctgcccacctcagcctcccaaagtgctgggattacaggcgtgagccacagtgcccggtcTCTTTCTTTATtttttactttattttatttcttgagaccagatctgctctgttactcaggctagagtgcagtggcattgagaggtgacaacctgctagcagccctcgcttgttcttggcgcctccttagccttggtgtctgctccagccaggctcgaggagcccttcagccagccactgcgctgtggggacccctctctggggctggccgaggccggagctggctccctctgctcacggggaggtgtggagggagaagcaccagtgggagcaggggctgtgcgtggcactcatgggccggcggggttccgggtgggcgcaggctaggcaggccctgcactggggtcgaagctggccgtcgcctgctgggcttgat-gggggggtgggggaggagctccctctgggctgccagagtgcccgggctaggcgtggtaaagtcctgggagtgccattgagaggtgaagccggctgggcttctgggtcgggtggggacttggagaacttttgtgtctagctaaaggattgtaaatgcaccaatcagcactctgtgtctagctaaaggtttgtaaacgcaccaatcaccactctgtgtctag-------------------ctgatctg--------------gtggggacttggaga---ac---------ttttgtgtctagctaaaggattgtaaatgcaccaatcagcgcttt--------------------------------------gtgtctagctaaaggattgtaaacacaccaatcagcacaatg----------------tcaaaacggaccaatcagctctctgtaaaattaaccaaccagctttccataaaatggaccaatcagctctctgtaaaattaaccaaccagctttccgtaaaatggaccaatcagctctctgtaaaatggaccaatcagcaagatgtgggtggggccggatgggggaataaaagcaggccccccaagccagcagtggcaacctgctggggtctttttcaacactg
i nomLeu3.chr1a            C 0 M 441
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            63946    0 -    750284 C
e otoGar3.GL873550           644201  389 +  18854210 T
e aotNan1.NW_018511496v1       2010  612 -    566255 I
e cebCap1.NW_016107755v1    1312550  886 -   1771730 I
e calJac3.chr4             30895173    0 + 171630274 C
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I
e rheMac8.chr4             31222463 3738 + 172585720 I

a score=288762.000000
s hg38.chr6_GL000254v2_alt  1862723 522 +   4827813 taaaagctgctttgttcttttgctttttgcagtaaatcttagtgctcctcactctttgcgtctacgctgcttttatgaactgttaacactcactgtgaaggtctgcagcttcactccttaagccagcgagaccacaaacccactgggagggataaacaactccagacgggaggaacaaacaacttcgggtgcaccacctttatgaactgtagcactcactgtgaaggtctgcagcttcactcctgaggccagcaagaccacgaacccaccagaaggaacgaacaactccagatatgccacctttaagggctataacactcaccgcggaagtctgcagcttcactcctgaagtcagtgagaccatgaacccaccagaaggaagaaactctggacacatctgaacatctgaaggaacaaactctggacacaccatctttaagaactgtaacactcaccgcgagggtacacggcttcattcttgaagtcagcgagactaagaacccaacaattccggacacagca
s panTro5.chr6             30708371 522 + 175400573 taaaagctgctttgttcttttgctttttgcagtaaatcttactgctcctcactctttgcgtccacgctgcttttatgaactgttaacactcactgtgaaggtctgcagcttcattccttaagccagcgagaccacaaacccactgggagggataaacaactccacacgggaggaacaaacaactcagggtgcaccacctttatgaactgtagcactcaccgcgaaggtctgcagcttcactcctgaggccagcaagaccacgaacccaccagaaggaacgaacaactccagatatgccacctttaagagctataacactcactgcggaagtctgcagcttcactcctgaagtcagtgagaccatgaacccaccagaaggaagaaactctggacacatctgaacatctgaaggaacaaactctggacacaccatctttaagaactgtaacactcaccgcgagggtacgcggcttcattcttgaagtcagcgagactaagaacccaacaagtccggacacagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31132015 522 + 173848474 taaaagctgctttgttcttttgctttttgcagtaaatcttactgctcctcactctttgcgtccacgctgcttttatgaactgttaacactcactgtgaaggtctgcagcttcattccttaagccagcgagaccacaaacccactgggagggataaacaactccagacgggaggaacaaacaactcagggtgcaccacctttatgaactgtagcactcaccgcgaaggtctgcagcttcactcctgaggccagcaagaccacgaacccaccagaaggaacgaacaactccagatatgccacctttaagagctataacactcaccgcggaagtctgcagcttcactcctgaagtcagtgagaccatgaacccaccagaaggaagaaactctggacacatctgaacatctgaaggaacaaactctggacacaccatctttaagaactgtaacactcaccgcgagggtacgcggcttcattcttgaagtcagcgagactaagaacccaacgagtccggacacagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     638939 522 +   2037526 taaaagctgctttgttcttttgctttttgcagtaaatcttactgctcctcactctttgcgtccacgctgcttttatgaactgttaacactcactgtgaaggtctgcagcttcactccttaagccagcgagaccacaaacccactgggagggataaacaactccagacgggaggaacaaacaactccgggtgcaccacctttatgaactgtagcactcaccgcgaaggtctgcagcttcactcctgaggccagcaagaccatgaacccaccagaaggaacaaacaactccagatatgccacctttaagagctataacagtcaccgtggaagtctgcagcttcactcctgaagtcagtgagaccatgaacccaccagaaggaagaaactctggacacatctgaacatctgaaggaacaaactctggacacaccatctttaagaactgtaacactcaccgcaagggtatgcggctttattcttgaagtcagcgagactaagaacccaccaagtccggacacagca
i gorGor5.CYUI01015528v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            63946   0 -    750284 C
e otoGar3.GL873550           644201 389 +  18854210 T
e aotNan1.NW_018511496v1       2010 612 -    566255 I
e cebCap1.NW_016107755v1    1312550 886 -   1771730 I
e calJac3.chr4             30895173   0 + 171630274 C
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I
e rheMac8.chr4             31222463 3738 + 172585720 I
e nomLeu3.chr1a            75314699 441 + 122973662 M

a score=32707.000000
s hg38.chr6_GL000254v2_alt  1863245 35 +   4827813 tgatcttggttcactacaacctggatctcccagag
s panTro5.chr6             30708893 35 + 175400573 tgatcttggttcactacaacctggatctcccagaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31132537 35 + 173848474 tgatcttggttcactacaacctggatctcccagaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     639461 35 +   2037526 tgatcttggttcactacaacctggatctcccagag
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30895173 29 + 171630274 tgatctcagctcactacaatctg------ccagcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            63946 29 -    750284 tgatctcagctcactacaacctg------ccagcc
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           644201 389 +  18854210 T
e aotNan1.NW_018511496v1       2010 612 -    566255 I
e cebCap1.NW_016107755v1    1312550 886 -   1771730 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I
e rheMac8.chr4             31222463 3738 + 172585720 I
e nomLeu3.chr1a            75314699 441 + 122973662 M

a score=56596.000000
s hg38.chr6_GL000254v2_alt  1863280 29 +   4827813 tcaagcaatcctctcgtctcagtctccca
s panTro5.chr6             30708928 29 + 175400573 tcaagcagtcctctcgtctcagtctccca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31132572 29 + 173848474 tcaagcagtcctcttgtctcagtctccca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     639496 29 +   2037526 tcaagcaatcctctcatctcagtctccca
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30895202 29 + 171630274 tcaagcaatcctcccatttcagcctccca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            63975 28 -    750284 tcaagcaattctcccatctcag-cttcca
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1313436 29 -   1771730 tcaagcaaccctcccatctaagcctgcca
i cebCap1.NW_016107755v1   I 886 C 0
s aotNan1.NW_018511496v1       2622 29 -    566255 tcaagcaattctcctgcctcagcctcccg
i aotNan1.NW_018511496v1   I 612 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           644201 389 +  18854210 T
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I
e rheMac8.chr4             31222463 3738 + 172585720 I
e nomLeu3.chr1a            75314699 441 + 122973662 M

a score=452207.000000
s hg38.chr6_GL000254v2_alt  1863309 177 +   4827813 agtagctggaactacaggtgtgtgccaccatgccccactaatttttgtatttattgtagagac--ggtttcagcatgttgcccaggctggtct-ccaactcctggactcaagtgatcctct-ccacctaggcctcccacagtgctgggattacaggaatgagccaccacgcccggccTAAT
s panTro5.chr6             30708957 177 + 175400573 agtagctggaactacaggtgtgtgccaccatgccccactaatttttgtatttactgtagagac--ggtttcagcatgttgcccaggctggtct-ccaactcctggactcaagcgatcctct-ccacctaggcctcccacagtgctgggattacaggaatgagccaccacgcccggccTAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31132601 177 + 173848474 agtagctggaactacaggtgtgtgccaccatgccccactaatttttgtatttactgtagagac--ggtttcagcatgttgcccaggctggtct-ccaactcctggactcaagcgatcctct-ccacctaggcctcccacagtgctgggattacaggaatgagccaccatgcccggccTAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     639525 177 +   2037526 agtagctgaaactacaggtgtgtgccaccatgccccactaatttttgtatttattgtagagac--ggtttcagcgtgttgcccaggctggtct-ccaactcctggactcaagcgatcctct-ccacctaggcctcccacagtgctgggattacaggaatgagccaccacgcctggccTAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75315140 165 + 122973662 agtagctggaactacaggtgtgtgctatgatgcc---ctaatttttgtgttcattgtatagac--agtttcaccatgttgcccaggctggtctcccaactcctggatttaa-----------ccacttaggcctcccacagtgctgggattacaggaatgagccaccacacctggccTAAT
i nomLeu3.chr1a            M 441 C 0
s calJac3.chr4             30895231 174 + 171630274 agtagttggaactacaggcg-----cgccacgccccactaatttttgtattcgttgtagagacggggtatcaccatgttgcccaggctcatct-ccgtctcctggactcaagcgatcctctcccccctaggcctcccagagtgctggaatttcaggcatgagccaccacgcct-gCCTAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            64003 178 -    750284 agtagctggaactacaggcacatgccaccatgccacactaattttcgtattcgttgtaaagaccgggtatcaccatgttgcccaggctcatct-ccatctcctggactcaaccaatcctct-ccccctaggcctcccaaagtgctggaattgcaggcatgagccaccacgcct-gCCTAAT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1313465 178 -   1771730 agtagctggaactacatgcgcgcaccaccacaccgcactaatttttgtatttgttgcagaggcggggtatcaccatgttgcccagcctcatct-ccgtctcctggactcaagcgatcctct-cccactaggcctcccaaagtgctgggatttcacgcataagctaccacgcct-gCCTAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       2651 178 -    566255 agtagctggaactacaggcgcgcaccaccatgccacactaatttttgtattcgttgtaaagacggggtatcaccatgttgcccaggctcatct-ccatctcctggactcaagcgatcctct-ccccctgggcctccaaaagtgctgggatttcaggcacaagccaccacgcct-gCCTAAT
i aotNan1.NW_018511496v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           644201 389 +  18854210 T
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I
e rheMac8.chr4             31222463 3738 + 172585720 I

a score=206502.000000
s hg38.chr6_GL000254v2_alt  1863486 62 +   4827813 TGGAAGTTTTAGAGTGCAGTGGGGATCACGTGCGTAGAGGTTACTGCTGCCTTAATTAAAGG--
s panTro5.chr6             30709134 62 + 175400573 TGGAAGTTTTAGAGTGCAGTGGGGATCATGTGCGTAGAGGTTACTGCAGCCTTAATTAAAGG--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31132778 62 + 173848474 TGGAAGTTTTAGAGTGCAGTGGGGATCATGTGCGTAGAGGTTACTGCAGCCTTAATTAAAGG--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     639702 62 +   2037526 TGGAAGTTTTAGAGTGCAGTGGGGATCACGTGCGTAGAGGTTACTGCAGCCTTAATTAAAGG--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75315305 62 + 122973662 TGGAAGTTTTAGAGTGCAGTGGGGATCACATGCATAGAGGTTACTACAGCCTTAATTAAATG--
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30895405 62 + 171630274 TAGAAGTTTTAGAGTGCGATGGAGATCACTTGGATAGAGGTTACTGTGGCCTTAATTAAATG--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            64181 62 -    750284 TAGAAGTTTTAGAGTGTGATGGAGATCACTTGGATAGAGGTTACTGTGGCCTTAATTAAATG--
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1313643 62 -   1771730 TAGAAGTTTTAGAGTACGATGGAGATCACTTGGATAGAGGTTACTGTGGCCTTAATTAAATG--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       2829 62 -    566255 TAGAAGTTTTAGAGTGCGATGGAGATCACTTGGATAGAGGTTACTGTGGCCTTAATTAAATG--
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           643812 64 +  18854210 TGGAGGATTTAGAGTGCAGTGGGGACCACGTGAGTGAAGGTTGCTGTGGCTTTAATTAAATGGA
i otoGar3.GL873550         T 389 I 337
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I
e rheMac8.chr4             31222463 3738 + 172585720 I

a score=216935.000000
s hg38.chr6_GL000254v2_alt  1863548 68 +   4827813 AGACAACATGTTTCATAAAACTTGGAAATTGTAGAGGGTGTGGGGAACCACTCAAATTCAGAATATCA
s panTro5.chr6             30709196 68 + 175400573 AGACAATACGTTTCATAAAACTTGGAAATTGTGGAGGGTGTGGGGAACCACTCAAATTCAGAATATCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31132840 68 + 173848474 AGACAATACGTTTCATAAAACTTGGAAATTGTGGAGGGTGTGGGGAACCACTCAAATTCAGAATATCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     639764 68 +   2037526 ACACAATACGTTTCATAAAACTTGGAAATTGTAGAGGGTGTGGGGAACCACTCAAATTCAGAATATCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75315367 68 + 122973662 AGACAACATGTTTCATAAAACTTGGAAATTGTAGAGGGTGTGGGGAACCACTCAAATTCAGAATATCA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30895467 66 + 171630274 AGACAATAGGTTTCATAAAACTTGGAAATTGTAAAGGAT--GGGGAATCACTCCAATTCAGAACATCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            64243 67 -    750284 AGACAGTAGGTTTCATAAAACTTGGAAATTGTAAAGGATG-GGGGAATCACTCAAATTCAGAACATCA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1313705 67 -   1771730 AGACAATAGGTTTCATAAAACTTGGAAATTGTAAAGGATG-GGGGAAACACTCAAATTCAGAACATCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       2891 67 -    566255 AGACAATAGGTTTCATAAAACTTGGAAATTGTAAAGGATG-GGGGAATCACCCAAATTCAGAACATCA
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           644213 61 +  18854210 AGATAGTATG--TCATAAAACTTGGAAATTGGAGGG-----AGGAAATGATTCAATTTCAAAACATCA
i otoGar3.GL873550         I 337 I 30793
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I
e rheMac8.chr4             31222463 3738 + 172585720 I

a score=458634.000000
s hg38.chr6_GL000254v2_alt  1863616 151 +   4827813 AAACAGAACTTTATTTTTTGTGTATTTGTTGCCAATCTTTTTCCCTACATATGTAATGTTTGTTTGTTTG----ACATGACTACCATTTCTGTTTTCATAATATGTTTAATACTTTTCCTCCACTTAACAAACATGGCTACGATTTGCCAAGTTG
s panTro5.chr6             30709264 155 + 175400573 AAACAGAACTTTATTTTTTGTGTATTTGTTGCCAATCTTTTTCCCTACATATGTAATGTTTGTTTGTTTGTTTGACATGACTACCATTTCTGTTTTCATAATATGTTTAATACTTTTCCTCCACTTAACAAACATGGCTACGATTTGCCAAGTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31132908 155 + 173848474 AAACAGAACTTTATTTTTTGTGTACTTGTTGCCAATCTTTTTCCCTACATACGTAATGTTTGTTTGTTTGTTTGACATGACTACCATTTCTGTTTTCATAATATGTTTAATACTTTTCCTCCACTTAACAAACATGGCTACGATTTGCCAAGTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     639832 155 +   2037526 AAACAGAACTTTATTTTTTGTGTATTTGTTGCCAATCTTTTTCCCTACATATGTAATGTTTGTTTGTTTGTTTGACATGACTACCATTTCTGTTTTCATAATATGTTTAATACTTTTCCTCCACTTAACAAACATGGCTATGATTTGCCAAGTTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75315435 144 + 122973662 GAACAGAACCTTA-TGTTTGTGTATTTGTTGCCAATCTTTTTCCCTACATATGTAATGTTTGTTTG--------ACATGACTACTGTT--TGTTTTCATAATATGTTTAATACTTTTCCTCCACTTAACAAACATGGCTACGATTTGCCAAGTTG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30895533 145 + 171630274 AAAC--AACCTTA--TTTTGTGTA--TGTTACCTGTCTTTTTCCCTACATATGTAATGTTTGTTTATTTG----ACATGATTACCATTTCCGTTTCCATAATATGTTTAATACTTTTCCTCCACTTAACAAACATGGCTACAGCTTGCCAAGTtg
i calJac3.chr4             C 0 I 270
s saiBol1.JH378327            64310 145 -    750284 AAAC--AATCTTA--TTTTGTGTA--TGTTACCTGTCTTTTTCCCTACATATGGAATGTTTGTTTGTTTG----ACATGATTACCATTTCCATTTTCATAATATGTTTAATACTTTTCCTCCACTTAACAAACATGGCTACAGCTTGCCAAGTtg
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1313772 141 -   1771730 AAAC--AACCTTA--TTTTGTGTA--TGTTACCTGTCTTTTCCCCTACATATGTAATATTTG----TTTG----ACATGATTACTATTTCCGTTTTCATAATATGTTTAATACTTTTCCTCCACTTAACAAACATGGCTGCAGTTTGCCAAGTtg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       2958 145 -    566255 AAAC--AATCTTA--TTTTGTGTA--TGTTGCCTGTCTTTTTCCCTGCCTATGTAATGTTTGTTTGTTTG----ACATGATTACCATTTCCGTTTTCATAATATGTTTAATACTTTTCCTCCACTTAACAAACATGGCTATAGCTTGCCAAGTtg
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           675067 142 +  18854210 AAACAGAGCCCTA-TTTTTGTGTT--TGTTGCCAGTCTTTTCCCCTACATGTGGAATGTTTCTTTG--------ACATGACCTCCATTTCCATCTTCAGAATATATTTAATACTTTT-TTCCACTTAACATACAT-GCTATAGTTTTCCAGATTG
i otoGar3.GL873550         I 30793 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I
e rheMac8.chr4             31222463 3738 + 172585720 I

a score=764.000000
s hg38.chr6_GL000254v2_alt  1863767 7 +   4827813 CTGATCA
s panTro5.chr6             30709419 7 + 175400573 CTGATCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31133063 7 + 173848474 CTGATCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     639987 7 +   2037526 CTGATCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75315579 7 + 122973662 CCGATCt
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378327            64455 1 -    750284 -----c-
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1313913 1 -   1771730 -----c-
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           675209 7 +  18854210 CAGATTA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       3103 0 -    566255 C
e calJac3.chr4             30895678 270 + 171630274 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I
e rheMac8.chr4             31222463 3738 + 172585720 I

a score=584699.000000
s hg38.chr6_GL000254v2_alt  1863774 273 +   4827813 TCCtttt-------------ttttttttt-ttcgagacagagtttcacccttgttgcccaggctggagtgcagtggca-gatctcagctcactacaacctctgcctgctgggttcaagtgattctccagcctcagcctcccaa-----------gtagctgggattacaggtacccgccaccactcctggctaacttttgtatttttagtagagacagagtt-ttgtcaggttggcc-aggctggtctcaaactcctgacctccagag-------------atccacccgcttcagcctcccaaagtgctggga
s panTro5.chr6             30709426 271 + 175400573 TCCtttt-------------ttttttttt---cgagacagagtttcacccttgttgcccaggctggagtgcagtggca-gatctcagctcactacaacctctgcctgctgggttcaagtgattctccagcctcagcctcccaa-----------gtagctgggattacaggtacccgccaccactcctggctaacttttgtgtttttagtagagacagagtt-ttgttaggttggcc-aggctggtctcaaactcctgacctccagag-------------atccacctgcttcagcctcccaaagtgctggga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31133070 270 + 173848474 TCCtttt-------------tttttttt----cgagacagagtttcacccttgttgcccaggctggagtgcagtggca-gatctcagctcactacaacctctgcctgctgggttcaagtgattctccagcctcagcctcccaa-----------gtagctgggattacaggtacccgacaccactcctggctaacttttgtgtttttagtagagacagagtt-ttgtcaggttggcc-gggctggtctcaaactcctgacctccagag-------------atccacccgctttagcctcccaaagtgctggga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     639994 269 +   2037526 TCCtttt-------------ttttttt-----cgagacagagtttcacccttgttgcccaggctggagtgcagtggca-gatctcagctcactacaacctctgcctgctgggttcaagtgattctccagcctcagccttccaa-----------gtagctgggattacaggtacccgccaccactcctggctaacttttgtatttttagtagagacagagtt-ttgtcaggttggcc-aggctggtctcaaacttctgacctccagag-------------atccacccgcttcagcctcccaaagtgctggga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75315586 272 + 122973662 ttttctt-------------tttttttttttttgagacagagtttcacccttgttgctcaggctggagtgcagtggca-gatctcagctcactacagcctctgcctgctgggttcaagtgattctccagcctcagcctcccaa-----------gtagccagcattacaggtgcccgccaccactcctggctaacttttgtatttttagtagagac--agtt-ttgtcaggttggcc-aggctggtctcaaacttctgacctccagtg-------------atccacctgcctcagcctcccaaagtgctggga
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30895948 272 + 171630274 -tttttt-------------tttttttttttttgagacggagtttcgctcttgttacccagactggagtgcaatggcgtaatctcggctcaccgcaacctccaccttctgggttcaagcaactctcctgcctcagcctcccga-----------gtagctgggactacaggcatgcaccaccatgcccagctaatttttgtatttttagtagagaaggggtt-tcaccatgttgacc-aggatggtctcgatctcttgacctc--gtg-------------atccacccgcctcgggctcccaaagtgctggga
i calJac3.chr4             I 270 C 0
s saiBol1.JH378327            64456 192 -    750284 -----------------------------------------------------------------------------------------------aacctccacctcctgggttcaagcgagtctcccgcctcagcctcctga-----------gtagctgggattacaggcac-ctgcaccacgctgagctaatttttgtatttttagcagagaaagggtt-tctccatgttggcc-acgctggtctggaactcctgacctcaggtg-------------atccacccgcctcggcctcccaaagcgctggga
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1313914 204 -   1771730 -----------------------------------------------------------------------------------------------aacctccgcctcctggattcaagcgagtctcccgcctcagcctcccagttacagtgcctgtaactgggattacaggcaccagccacgacgaacagctaatttttgtatttttagtagagaaagggtt-actccatgttgccc-aggctggtctcgaactcctgacctcaggcg-------------atccacccaccttggcctcccaaagggctggga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       3103 194 -    566255 ----------------------------------------------------------------------------------------------caacctccgcctcctggattcaagcgagtctcccgcctcagcctcctga-----------gtagctgggattacaggcacctgccaccacacccagctaatttttgtatttttagtagagaaagggtt-tctccatgttggcc-agactggtctcgaactcctgacctcaggcg-------------atccacccgccttggcctcccaaagtgctggga
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           675216 289 +  18854210 TCCTTTTAACTACTCCATGCtttttttttttttgagacagcgcctcaagc-tatccccctgggtagagtgctgtggca---tcacagctcacagcaacctccaactcctgggctcaagcaagtctcctgcctcagcctcccaa-----------gtagctgggaccacaggtgcccgccacaacccccggccattttttg-------gctgcagccatcattgttgtttggcgggcctgggctggattcgaacccgccaccttaggtgtatgtggctggcaccttagccgcttcagccac---aggtgccgagc
i otoGar3.GL873550         C 0 I 306
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I
e rheMac8.chr4             31222463 3738 + 172585720 I

a score=145476.000000
s hg38.chr6_GL000254v2_alt  1864047 75 +   4827813 taacaggcgtgagccactgaacctggccCAGATCATCCTTTTAAGTGTT-----CTTTTTCATTTGTAGGTTTAACATT---G
s panTro5.chr6             30709697 75 + 175400573 taacaggcgtgagccactgaacctggccCAGATCATCCTTTTAAGTGTT-----CTTTTTCATTTGTAGGTTTAACATT---G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31133340 75 + 173848474 taacaggtgtgagccactgaacctggccCAGATCATCCTTTTAAGTGTT-----CTTTTTCATTTGTAGGTTTAACATT---G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     640263 75 +   2037526 taacaggcgtgagccactgaacctggccCAGATCATCCTTTTAAGTGTT-----CTTTTTCATTTGTAGGTTTAACATT---G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75315858 75 + 122973662 taacaggcgtgagccactgagcccagccCAGATCATCCTTTTAAGTATT-----CTTTTTCATGTGTAGGTTTAACATT---G
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30896220 62 + 171630274 ttataggcgtgagccaccg-----cgcccg----------------gccCCTTGCTTTTTCATGTATAGATTTGACATTATCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            64648 75 -    750284 ttataggcgcgagccc--------cgcCCAGATCAACCTTTTAAGTGTTCCTTGCTTTTTCATGTATAGATTTGACATTACCG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1314118 75 -   1771730 ttataggcgcaagccC--------TGCCCAGATCAACCTTTTAAGTGTTCCTTGCTTTTTCATGTATAGATTTGACATTATAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       3297 75 -    566255 ttataggcgtgagccC--------TGCCCAGATCAACTTTTTAAGTGTTCCCTGCTTTTTCATGTATAGATTTGACATTACCG
i aotNan1.NW_018511496v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           675505 306 +  18854210 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I
e rheMac8.chr4             31222463 3738 + 172585720 I

a score=712259.000000
s hg38.chr6_GL000254v2_alt  1864122 254 +   4827813 GCTTTGGGGTGAGAAAGAA---ACCAAGACT----------------CACCCAGAGTCATAAGCCCAACAAGAGAATGGGTCTGTCTGGGCTAGCCCTGGGCTACTGGATGAGCAGGGTTGGCCTTTTCATTCTCTGAGTCTTCGTTTCTCTGGCCTTTACATTTCTCTGGAGGGACTTTTCATTTTCTCTGGAAACCAACTCCAAGTGCACTTTTCCAGAAGGCATTTTTGTAATGCCT--GGTTGGCTGCATGCGACCTCTGGTTTTCCTCCT
s panTro5.chr6             30709772 270 + 175400573 GCTTTGGGGTGAGAAAGAA---ACCAAGACTGTGAGGGTGAGAGACTCACCCAGAGTCATAAGCCCAACAAGAGAATGGGTCTGTCTGGGCTAGCCCTGGGCTACTGGATGAGCAGGGTTGGCCTTTTCATTCTCTGAGTCTTCGTTTCTCTGGCCTTTACATTTCTCTGGAGGGACTTTTCATTTTCTCTGGAAACCAACTCCAAGTGCACTTTTCCAGAAGGCATTTTTGTAATGCCT--GGTTGGCTGCATGCGACCTCTGGTTTTCCTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31133415 270 + 173848474 GCTTTGGGGTGAGAAAGAA---ACCAAGACTGTGAGGGTGAGAGACTCACCCAGAGTCATAAGCCCAACAAGAGAATGGGTCTGTCTGGGCTAGCCCTGGGCTACTGGATGAGCAGGGTTGGCCTTTTCATTCTCTGAGTCTTCGTTTCTCTGGCCTTTACATTTCTCTGGAGGGACTTTTCATTTTCTCTGGAAACCAACTCCAAGTGCACTTTTCCAGAAGGCATTTTTGTAATGCCT--GGTTGGCTGCATGCGACCTCTGGTTTTCCTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     640338 267 +   2037526 GCTTTGGGGTGAGAAAGAA---ACCAAGACTGTGAGGGT--GAGACTCACCCAGAGTCATAAGCCCAACAAGAGAATGGGTCTGTCTGGGCTAGCCCTGGGCTACTGGATGAGCA-GGTTGGCCTTTTCATTCTCTGAGTCTTCGTTTCTCTGGCCTTTACATTTCTCTGCAGGGAGTTTTCATTTTCTCTGGAAACCAACTCCAAGTGCACTTTTCCAGAAGGCATTTTTCTAATGCCT--GGTTGGCTGCATGCGACCTCTGGTTTTCCTCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75315933 270 + 122973662 GCTTTGGGGTGAGAAAGAA---ACCAAGACTGTGAGGGTGAGAGACTCACCCAGAGTCATAAGCCCAACAAGAGAATGGGTCTGTTTGGGCCAGCCCTGGGCTGCTGGATGAGCAGGGTTGGCCTTTTCATTGTCTGAGTCTTCGTTTCTCTGGCCTTTACATTTCTCTGGAGGGACTTCTCATTTTTCCTGGAAACCAACTCCAAGTGCACTTTTCCAGAAGGCATTTTTGTAATGCCT--GGTTGGCTGCATGCGACCTCTGGTTTTCCTCCC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30896282 238 + 171630274 GCTTTGGGGTAAGGAAGAAACCACCACGACTCTGAGGGTCGGAGACTCGCCC--AGTCATAAGCTCAACAAGAGAATGGGTCTGTCTGGGCTAGCCTTGGGCTGTTGGATGAGTAGGGTTGGCCTTTT--------------------------------CATTTCTCTGGAGGGATTTTTCATTTTCTCTGGAAACCAACTCCAAATTCCTTCTTCCGGAAGGCG-TTTTGGAACGCTT--GACTGCCTGCATGCGACCTCGGGTTGCCTCCCT
i calJac3.chr4             C 0 I 7
s saiBol1.JH378327            64723 237 -    750284 GCTTTGGGGTAAGGAAGAAACTACCACGACTCTGAGGGTCAGAGACTCGCGC--AGTCATAAGCCCAGCAAGAGAATGGGTCTGTCTGGGCTAGCCTTGGGCTGTTGGATGAGCA-GGTTGGCCTTTT--------------------------------CATTTCTCTGGAGGGATTTTTCATTTTCTCCAGAAACCAACTCCAAATGCCCTCTTCCGGAAGGCA-TTTTGGAACGCTT--GATTGGCTGCATGCGACCTCGGGTTGCCTCCCT
i saiBol1.JH378327         C 0 I 7
s cebCap1.NW_016107755v1    1314193 237 -   1771730 GCTTTGGGGTAAGGAAGAAACCACCACGACTGTGAGGGTCAGAGACTTGCCC--AGTCATAAGCCCAACAAGAGAATGGGTCTATCTGGGCTAGCCTTGGGCTGTTGGATGAGCAGGGCTGGCCTTTT--------------------------------CATTTCTCTGGAGGGATTTTTCATTTTCTCCGGAAACGAGCTCCAAATGCGCTCTTCCAGAAGGCG-TTTTGGAACGCTT--AATTGACTGCATGCGGCCTCGGGTTGCCTCCT-
i cebCap1.NW_016107755v1   C 0 I 29
s aotNan1.NW_018511496v1       3372 238 -    566255 GCTTTGGGGTAAGGAAGAAACCACCACGACTCTAAGGGTCAGAGACTCGCCC--AGTCATAAGCCCAACAAGAGAATGGGTCTGTCTGGGCTAGCCTTGGGCTGTTGGATGAGCAGGGTTGGCCTTTT--------------------------------CATTTCTCTGGAAGGATTTTTCATTTTCTCCGGAAACCAACTCCAAATGCGCTCTTCCGGAAGGCA-TTTTGGAACGCTT--GATTGGCTGCATGCGACCTCGGGTTGCCTCCCT
i aotNan1.NW_018511496v1   C 0 I 29
s otoGar3.GL873550           675811 216 +  18854210 GCTTTTGGATGAAAAAGAA---ACCAAAGCTCTGAGGCTGAGAGATTTGTCCAGTGTCATAAATCCAACAAAGGAATGGGTCCTTGTGGGCC-----------GCAGGCTGACCTGACGTGGGTTGCT--------------------------------------------GGAACTCTTCA-TTTCTCTGGAGACAAACTGCAACTGCACTTTTCCGGACAGCGTTTATGGAATGCTTTCTGTTGGCTGCATATGACCTCTGGTTTCCTTCCT
i otoGar3.GL873550         I 306 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I
e rheMac8.chr4             31222463 3738 + 172585720 I

a score=34681.000000
s hg38.chr6_GL000254v2_alt  1864376 24 +   4827813 TCACCCTTTCCTGCTCAGTCACTG
s panTro5.chr6             30710042 24 + 175400573 TCACCCTTTCCTGCTCAGTCACTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31133685 24 + 173848474 TCACCCTTTCCTGCTCAGTCACTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     640605 24 +   2037526 TCACCCTTTCCTGCTCAGTCAGTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75316203 24 + 122973662 TCACCCTTTCCTTCTCAGTCACTG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             30896527 22 + 171630274 TCGCCGCTTCCTGCTCAGCTAC--
i calJac3.chr4             I 7 C 0
s saiBol1.JH378327            64967 22 -    750284 TCGAAACTTCCTGCTCAGCTGC--
i saiBol1.JH378327         I 7 C 0
s otoGar3.GL873550           676027 24 +  18854210 TCCCTTTTTCCTTCTCAGCCTCTG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       3610 29 -    566255 I
e cebCap1.NW_016107755v1    1314430 29 -   1771730 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I
e rheMac8.chr4             31222463 3738 + 172585720 I

a score=61341.000000
s hg38.chr6_GL000254v2_alt  1864400 19 +   4827813 CATTTTCTGTTCTCAAAAG
s panTro5.chr6             30710066 19 + 175400573 CAGTTTCTGTTCTCAAAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31133709 19 + 173848474 CAGTTTCTGTTCTCAAAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     640629 19 +   2037526 CAGTTTCTGTTCTCAAAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75316227 19 + 122973662 CAGTTTCTGTTCTCAAAAG
i nomLeu3.chr1a            C 0 I 100
s calJac3.chr4             30896549 18 + 171630274 CAGTTTCTGTTCTCAAAG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            64989 18 -    750284 CAGTTTCTGTTCTCAAAG-
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1314459 18 -   1771730 CAGTTTCTGTTCTCAAAG-
i cebCap1.NW_016107755v1   I 29 C 0
s aotNan1.NW_018511496v1       3639 18 -    566255 CAGTTTCTGTTCTCAAAG-
i aotNan1.NW_018511496v1   I 29 C 0
s otoGar3.GL873550           676051 19 +  18854210 CAGTTTCTGTTCTTAAAAG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I
e rheMac8.chr4             31222463 3738 + 172585720 I

a score=150633.000000
s hg38.chr6_GL000254v2_alt  1864419 72 +   4827813 AACCCTCTCATATAGCACGTGCAGAGAGCAGTAGCGAGTCAGGCTGTCCCGCGGTGTGTGTCCGGACTCCTG
s panTro5.chr6             30710085 72 + 175400573 AACCCTTTCATATAGCACGTGCAGAGAGCAGTAGCGAGTCAGGCTGTCCCTCAGTGTGTGTCCGGACTCCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31133728 72 + 173848474 AACCCTTTCATATAGCACGTGCAGAGAGCAGTAGCGAGTCAGGCTGTCCCTCAGTGTGTGTCCAGACTCCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     640648 72 +   2037526 AACCCTCTTATATAGCACGTGCAGAGAGCAGTAGTCAGTCAGGCTGTCCCACGGTGTGTGTCCGGACTCCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30896567 70 + 171630274 GACCCTCTCATACAGCATGTGCAGAAAGGAGAAGTGAGTCAGGCTGTCCCGCAC--TGTGTCCTGACTCCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            65007 49 -    750284 GACTCTGTCATACAGCATGTGCAGAAAGCAGAAGTGAGTCAGGCTG-----------------------CTG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1314477 72 -   1771730 GACCCTCTCATACAGCATGTGCAGAAAGCAGAAGTGAGTCAGGTTGTCCCGCGCTGTGTGTCCGGACTCCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       3657 72 -    566255 GATCCTCTCATACAGCATGTGCAGAAAGCAGAAGTGAGTCAGGCTGTCCCGCGCTGTGTGTCCGGACTCCTG
i aotNan1.NW_018511496v1   C 0 I 506
s otoGar3.GL873550           676070 67 +  18854210 GACCCTCC--TACAGT-TGTATAAAGAGCAAAATTGAGTCAGACTGCCC--CATTGTGTTTTCAGAGTCCTG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I
e rheMac8.chr4             31222463 3738 + 172585720 I
e nomLeu3.chr1a            75316246 100 + 122973662 I

a score=606458.000000
s hg38.chr6_GL000254v2_alt  1864491 254 +   4827813 TGTGCTCTGGCAGTGGGGCCAGTGGGCTGGGAAGAGTTGCAGGAGAAA-CCCAGTGGGAGAGAAAGACTCCAACCTGGGAACCTCGGGGCATCTGGTAGCGCCAGAATGACTTTCCAAAATTTTGGTTGGGGCAGTCACAGGCCCCTGCTCGCCACGGTGGCCTCTGGCAAAGAAACACATGTGGGGCAGACAAGAGGGATGCTCGCCAATCTCCTCTGAATTTTGCAACCCTGTGTGTTAAAAACAGGTATTTC
s panTro5.chr6             30710157 254 + 175400573 TGTGCTCTGGCAGTGGGGCCAGTGGGCTGGGAAGAGTTGCAGGAGAAA-CCCAGTGGGAGAGAAAGACTCCAATCTGGGAACCTCGGGGCATCTGGTAGCGCCAGAATGACTTTCCAAAATTTTGGTTGGGGCAGTCACAGGCCCCTGCTCGCCACAGTGGCCTCTGGCAAAGAAACACATGTGGGGCAGACAAGAGGGATGCTCGCCAATCTCCTCTGAATTTTGCAACCCTGTGTGTTAAAAACAGGTATTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31133800 254 + 173848474 TGTGCTCTGGCAGTGGGGCCAGTGGGCTGGGAAGAGTTGCAGGAGAAA-CCCAGTGGGAGAGAAAGACTCCAACCTGGGAACCTCGGGGCATCTGGTAGCGCCAGAATGACTTTCCAAAATTTTGGTTGGGGCAGTCACAGGCCCCTGCTTGCCACGGTGGCCTCTGGCAAAGAAACACATGTGGGGCAGACAAGAGGGATGCTCGCCAATCTCCTCTGAATTTTGCAATCCTGTGTGTTAAAAACAGGTATTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     640720 254 +   2037526 TGTGCTCTGGCAGTGGGGCCAGTGGGCTGGGAAGAGTTGCAGGAGAAA-CCCAGTGGGAGAGAAAGACTCCAACCTGGGAACCTCGGGGCATCTGGTAGCGCCAGAGTGACTTTCCAAAATTTTGGTTGGGGCAGTCACAGGCCCCTGCTCACCACGGTGGCCTCTGGCAAAGAAACACATGTGGGGCAGACAAGAGGGATGCTCGCCGATCTCCTCTGAATTTTGCAACCCTGTGTGTTAAAAACAGGTATTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30896637 241 + 171630274 TGTGCTCCCGCAGTGGGGCCAGGGGCCTGGGGAGAGTTGCAGGAGAAA-CCCCGCGGTAGAGAAAGACTCCAACCTGGGAACCTCG--------GGTAGCGTCC-AGTGACTTTCCAAAATCTTGGTCGGGGTGGTCACAGGCCCCTGCTCGCCATGCTGGTCTCTGGCAAAGAAAAGCGGGTGGGGCATCCAA----GATGCTCATGGACCTCCTCTGAATTTTGCACCCCTGTGTGTTAAAAACAGGTATTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            65056 241 -    750284 TGTGCTCCGGCAGTGGGGCCAGGGGACTGGGAAGAGTTGCAGGAGAAA-CCCCGCGGGAGAGAAAGACTCCAACCTGGGAACCTCG--------GGTAGCGTCC-AGTGACTTTCCAAAATCTTGGTCGGGGCTGTCACAGGCCCCTGCTCGCCATGGTGGTCTCTGGCAAAGAAAAGCGTGTGGGGCATCCAA----GATGCTCATGGACCTCCTCTGAATTTTGCACCCCTGTGTGTTGAAAACAGGTATTTC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1314549 241 -   1771730 CGTGCTCCGGCAATGGGGCCAGGGGGCTGGGAAAAGCTACAGGAGAAA-CCCCGCGGGAGAGAAAGACTTCAACCTGGGAACCTCG--------GGTAGTGTCC-AGTGACTTTCCAAAATCTTGGTCAGGATGATCACAGGCCTCTGCTCGCCATGGTGATCTCTGGCAAAGAAAAGTGTGTGGGTCATCCAA----GATGCTCATGGACCTCCTCTGAATTTTGCACCCCTGTGTGTTGAAAACAGGTATTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       4235 241 -    566255 TGTGCTCCGGCAGTGGGGCCAGGGGGCTGGGAAGAGTTGCAGGAGAAA-CCCCGCGGGAGAGAAAGACTCCAACCTGGGAACCTCG--------GGTAGCGTCC-AGTGACTTTCCAAAATCTTGGTCGGGGCGATCACAGGCCCCTGCTCGCCACAGTGGTCTTTGGCAAAGAAAAGCATGTGGGGCGTCCAA----GATGCTCATGGACCTCCTCTGAATTTTGCACCCCTGTGTGTTAAAAACAGGTATTTC
i aotNan1.NW_018511496v1   I 506 C 0
s otoGar3.GL873550           676137 243 +  18854210 TTTGCCCACACAGTGAAG---------GGAGAAAAATTGAAGAAGAAATTCTCAAGGCAGAGAAAGGCTCTAACCT-GGAACCTCAGGGCATCTTACAATTCAGGGATGACTTTCCAAAATCTCAGG-GGGGCAGTCACAGGCCTTTACTCATCACAGAGCCCTCTGGCAAAGAAGGGC-TATGGTATGGACAAGAAGGACGCTAGCAGATCACCTCTGAGTTCTACTACCCTATATGCTAAAAATAGACATTTC
i otoGar3.GL873550         C 0 I 282
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I
e rheMac8.chr4             31222463 3738 + 172585720 I
e nomLeu3.chr1a            75316246 100 + 122973662 I

a score=329168.000000
s hg38.chr6_GL000254v2_alt  1864745 114 +   4827813 TGGTCTTTAAAGACACTTGGAAAAGACAGACTTGTTGAATACTTAGAAAGGCCAAGCCACAGCCAGAAGCTTGGTGTCTGGGATCCATCATCTCTAAGGTTTTAAAAGCATCTT
s panTro5.chr6             30710411 114 + 175400573 TGGTCTTTAAAGACACTTAGAAAAGACAGACTTGTTGAATACTTAGAAAGGCCAAGCCACAGCCAGAAGCTTGGTGTCTGGGATCCATCATCTCTAAGGTTTTAAAAGCATCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31134054 114 + 173848474 TGGTCTTTAAAGACACTTAGAAAAGACAGACTTGTTGAATACTTAGAAAGGCCAAGCCACAGCCAGAAGCTTGGTGTCTGGGATCCATCATCTCTAAGGTTTTAAAAGCATCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     640974 114 +   2037526 TGGTCTTTAAAGACACTTAGAAAAGACAGACTTGTTGAATACTTAAAAAGGCCAAGCCACAGCCAGAAGCTCGGTGTCTGGGATCCATCATCTCTAAGGTTTTAAAAGCATCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30896878 113 + 171630274 TGGTCTTTAAAGACACTTAGAAAAGACAGACTTGCTGAATACTTAGAAAGGCCAAGCCACAGTCAAAAGCTTGGTATCTGGGATCCATTATCTCCAAGG-TTTAAAAGTATCTT
i calJac3.chr4             C 0 I 317
s saiBol1.JH378327            65297 113 -    750284 TGGTCTTTAAAGACGCTTAGAAAAGACAGACTTGTTCAGTAGTTAGAAAGGCCAAGCCACAGCCAAAAGCTTGGTATCTGGGATCCATTATCTCCAAGG-TTTAAAAGCATCTt
i saiBol1.JH378327         C 0 I 820
s cebCap1.NW_016107755v1    1314790 113 -   1771730 TGGTCTTTAAAGACACTTAGAAAAGACAGACTTGTTGAATACTTAGAAAGGCCAAGCCACAGCCAAAAGCTTGGTATCTGGGATCCATTATCTCCAAGG-TTTAAAAGCATCTT
i cebCap1.NW_016107755v1   C 0 I 332
s aotNan1.NW_018511496v1       4476 113 -    566255 TGGTCTTTAAAGACACTTAGAAAAGACAGACTTGTTGAATAGTTAGAAAGGCCAAGCCACAGCCAAAAGCTTGGTATCTGGGATCCATTATCTCCAAGG-TTTAAAAGCATCTT
i aotNan1.NW_018511496v1   C 0 I 24194
s otoGar3.GL873550           676662 113 +  18854210 TGATCTTGAAAGCCACTTAGGAAAGAGATGCTTGTTGAATATTTAGAAGGGCAAAGTCACAGTCAGAAACTAGGTGTCTGGGATTTATCATTCCCAAGG-CTTTAAAGCATCTT
i otoGar3.GL873550         I 282 I 651
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I
e rheMac8.chr4             31222463 3738 + 172585720 I
e nomLeu3.chr1a            75316246 100 + 122973662 I

a score=3452555.000000
s hg38.chr6_GL000254v2_alt  1864859 6246 +   4827813 [encoded data, 6276 characters]
s panTro5.chr6             30710525 6246 + 175400573 [encoded data, 6276 characters]
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31134168 6243 + 173848474 [encoded data, 6276 characters]
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     641088 6268 +   2037526 [encoded data, 6276 characters]
i gorGor5.CYUI01015528v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            65410  820 -    750284 I
e otoGar3.GL873550           676775  651 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1314903  332 -   1771730 I
e calJac3.chr4             30896991  317 + 171630274 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30511283 3917 - 170955103 I
e rheMac8.chr4             31222463 3738 + 172585720 I
e nomLeu3.chr1a            75316246  100 + 122973662 I

a score=7574.000000
s hg38.chr6_GL000254v2_alt  1871105 12 +   4827813 agaagatatgat
s panTro5.chr6             30716771 12 + 175400573 agaagatatgat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31140411 12 + 173848474 agaagatatgat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     647356 12 +   2037526 agaagatatgat
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             30515200 12 - 170955103 aaaaaaaaagaa
i macFas5.chr4             I 3917 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            65410 820 -    750284 I
e otoGar3.GL873550           676775 651 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1314903 332 -   1771730 I
e calJac3.chr4             30896991 317 + 171630274 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e chlSab2.chr17            30068015 3736 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e rheMac8.chr4             31222463 3738 + 172585720 I
e nomLeu3.chr1a            75316246 100 + 122973662 I

a score=35976.000000
s hg38.chr6_GL000254v2_alt  1871117 20 +   4827813 aaagaaaaataatttaaata
s panTro5.chr6             30716783 20 + 175400573 aaagaaaaataatttaaata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31140423 20 + 173848474 aaagaaaaataatttaaata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     647368 20 +   2037526 aaagaaaaataatttaaata
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31226201 20 + 172585720 aaagaaaaagaatttaaata
i rheMac8.chr4             I 3738 C 0
s macFas5.chr4             30515212 20 - 170955103 aaagaaaaagaatttaaata
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            30071751 20 -  71996105 aaagaaaaagaatttaaata
i chlSab2.chr17            I 3736 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            65410 820 -    750284 I
e otoGar3.GL873550           676775 651 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1314903 332 -   1771730 I
e calJac3.chr4             30896991 317 + 171630274 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e nomLeu3.chr1a            75316246 100 + 122973662 I

a score=502879.000000
s hg38.chr6_GL000254v2_alt  1871137 232 +   4827813 acaatttttattcaaaatacaaataatagggctgggcgcggtggctgacgcctgtaatcctagcactttggcaggccgaggcgggcagatcac--gaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaaattagctgggcgtagtggcgggtgcctgtaatcccagctactcgggagactaaggcacaagaatcgcttgaa
s panTro5.chr6             30716803 232 + 175400573 acaatttttattcaaaatacaaataataggactgggcgcggtggctgacgcctgtaatcctagcactttggcaggctgaggcgggcagatcac--gaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaaattagctgggcgtagtggcgggtgcctgtaatcccagctactcgggagactaaggcacaagaatcgcttgaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31140443 232 + 173848474 acaatttttattcaaaatacaaataataggactgggcgcggtggctgacgcctgtaatcctagcactttggcaggccgaggcgggcagatcac--gaggtcaggagttcaagaccagcctggccaacagggtgaaaccctgtctctactaaaaatacaaaaaattagctgggcgtagtggcgggtgcctgtaatcccagctactcgggagactaaggcacaagaatcgcttgaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     647388 232 +   2037526 acaatttttattcaaaatacaaataatagggctgggcgcggtggctgacgcctgtaatcctagcactttggcaggccgaggcgggcagatcac--gaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaaattagctgggcatagtggcgggtgcctgtaatcccagctactcgggagactaaggcacaagaatcacttgaa
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31226221 232 + 172585720 acaatttttattcaaaatacaaataatagggctgggcatggtgactgacgcctgtaatcccagcactttgggaggccaaggcaggcagatcac--gaggtcaggaattcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaaattagctgggtgtggtggcgggtgcctgtaatcccagctactcgggagtctgaggcacaagaatcacttgaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30515232 232 - 170955103 acaatttttattcaaaatacaaataatagggctgggcatggtgactgacgcctgtaatcccagcactttgggaggccaaggcaggcagatcac--gaggtcaggaattcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaaattagctgggtgtggtggcgggtgcctgtaatcccagctactcgggagtctgaggcacaagaatcacttgaa
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            30071771 232 -  71996105 acaatttttattcaaaatacaaataatagggctgggcatggtgactgacgcctgtaatcccagcactttgggaggccaaggcaggcaaatcac--gaggtcgggaattcaagaccagcctggccaacacggtgaaaccctgtctctactaaaaacacaaaaaattagctgggtgtggtggcgggtgcctgtaatcccagctactcgagagtctgaggcacaagaatcacttgaa
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550           677426 229 +  18854210 ACATTGTATTTTTAAAAAAGAAAT--TTTggccaggagttgtggctcatgcctgtaatcctagcactctgagaggccaagggcagtcaattgcttgagctcagaagttcgagaccagcctgagcaaga--acaagaccttgtctctactaaaaata-gaaaaactagtcacgtgtagtgttgcatgcctatagtcccagctactcaggagggtgaggcaggaagattgcttgag
i otoGar3.GL873550         I 651 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            65410 820 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1314903 332 -   1771730 I
e calJac3.chr4             30896991 317 + 171630274 I
e colAng1.NW_012115577v1     717330 12841 -   1829203 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e nomLeu3.chr1a            75316246 100 + 122973662 I

a score=210167.000000
s hg38.chr6_GL000254v2_alt  1871369 71 +   4827813 cccgggaggcggaggttgcagtgagccgagatcgcaccactgcactccagcctaggcgacagagtgagact
s panTro5.chr6             30717035 71 + 175400573 cccgggaggcggaggttgcagtgagccgagatcgcaccactgcactccagcctaggcgacagagtgagact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31140675 71 + 173848474 cccgggaggcggaggttgcagtgagccgagatcgcaccactgcactccagcctaggcgacagagtgagact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     647620 71 +   2037526 cccgggaggcggaggttgcagtgagccgagatcgcaccactgcactccagcctaggcgacagagtgagact
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31226453 71 + 172585720 cccgggaggcagaggttgcagtgagccgagatcacaccactgcactccagcctaggcgacagagtgagact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30515464 71 - 170955103 cccgggaggcagaggttgcagtgagccgagatcacaccactgcactccagcctaggcgacagagtgagact
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            30072003 71 -  71996105 cccgggaggcagaggttgcagtgagccaagatcacaccactgcactccagcctaggcgacagagtgagact
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     730171 71 -   1829203 cccgggaggcagaggttgcagtgagccgagatcacaccactgcactccagcctaggcaacagagtgagact
i colAng1.NW_012115577v1   I 12841 C 0
s otoGar3.GL873550           677655 68 +  18854210 cccaaaagtttgaggttgctgtgagct---atgacagcatggcactctacccagggtgacagagtgggact
i otoGar3.GL873550         C 0 I 471
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            65410 820 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1314903 332 -   1771730 I
e calJac3.chr4             30896991 317 + 171630274 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e nomLeu3.chr1a            75316246 100 + 122973662 I

a score=543864.000000
s hg38.chr6_GL000254v2_alt  1871440 247 +   4827813 gtgtctcaaaaaag-aaaaaaaaagaaaagaaaagaaaaagaaaaaagaatattttgcccttataacattattaattatatactttcaagtgagagcaatatgactaattatgcttaattatttttgaaaatgatgctttaacaatttgtaatgcagacatttgatggtctggttctatgttgagttcatgttgatacttggtcttaaggacagttagagctgataaaaataacttgtgcatagacc-a
s panTro5.chr6             30717106 248 + 175400573 ctgtctgaaaaaaggaaaaaaaaaaaaaagaaaagaaaaagaaaaaagaatattttgcccttataacattattaattatatactttcaagtgagagcaatatgactaattatgcttaattatttttgaaaatgatgctttaacaatttgtaatgcagacatttgatggtctggttctatgttgagttcatgttgatacttggtcttaaggacagttagagctgataaaaataacttgtgcatagacc-a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31140746 247 + 173848474 ctgtctcaaaaaaa-gaaaaaaaaaaaaagaaaagaaaaagaaaaaagaatattttgcccttatcacattattaattatatactttcaagtgagagcaatatgactaattatgcttaattatttttgaaaatgatgctttaacaatttgtaatgcagacatttgatggtctggttctatgttgagttcatgttgatacttggtcttaaggacagttagagctgataaaaataacttgtgcatagacc-a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     647691 246 +   2037526 ctgtctcaaaaaag--aaaaaaaaaaaaagaaaagaaaaagaaaaaagaatattttgcccttataacattattaattatatactttcaagtgagagcaatatgactaattatgcttaattatttttgaaaatgatgctttaacaatttgtaatgcagacatttgatggtctggttctatgttgagttcatgttgatacttggtcttaaggacagttagagctgataaaaataacttgtgcatagacc-a
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31226524 234 + 172585720 gtgtctcaaaaaaa-------aaaaa-----aaaagaaaagaaaaaagaatattttgcccttataacattattaattatatactttcaagtgacagcaatatgac-aattatgcttaattattttcaaaaatgatgctttaacaatttgtaatgcaagcatttgatggtctggttctatgttgagctaatgttgatacttggtcttaaggacagttagagctgatagaaataacttgtgcacagttg--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30515535 237 - 170955103 gtgtctcaaaaaaa-------aaaaaaa--gaaaagaaaagaaaaaagaatattttgcccttataacattattaattatatactttcaagtgacagcaatatgac-aattatgcttaattattttcaaaaatgatgctttaacaatttgtaatgcaagcatttgatggtctggttctatgttgagctaatgttgatacttggtcttaaggacagttagagctgatagaaataacttgtgcacagttg--
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            30072074 239 -  71996105 gtgtctcaaaaaaa-------aaagaaaagaaaagaaaaagaaaaaagaatattttgcccttataacattattaattatatactttcaagtgagagcaatatgac-aattatgcttaattattttagaaaatgatgctttaacaatttgtaatgcaagcatttgatggtctggttctatgttgagttaatgttgatacttggtcttaaggacagttagagctgatagaaataacttgtgcacagttg--
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     730242 240 -   1829203 ctgtgtcaaaaaaa-------aaaaaaaggaaaagaaaaagaaaAAAGAATAttttgcccttataacattattaattatatactttcaagtgagagcaatatgac-aattatgcttaattatttttgaaaatgatgctttaacaatttgtaatgcaagcatttgatggtctggttctttgttgagttaatgttgatacttggtcttaaggacagttagagctgatagaaataactTGTGCACAGTTcg-
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            65410 820 -    750284 I
e otoGar3.GL873550           677723 471 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1314903 332 -   1771730 I
e calJac3.chr4             30896991 317 + 171630274 I
e manLeu1.NW_012106264v1      62730 3445 +    779361 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e nomLeu3.chr1a            75316246 100 + 122973662 I

a score=325165.000000
s hg38.chr6_GL000254v2_alt  1871687 108 +   4827813 ggcgcggtggctcacgcctgtaataccagcactttgggagtctgaggcgggcggatcacgagatcaggagatggagaccatcctggctaacacggtgaagccccgtct
s panTro5.chr6             30717354 108 + 175400573 ggcgcggtggctcacgcctgtaataccagcactttgggagtctggggcgggcggatcacgagatcaggagatggagaccatcctggctaacacggtgaagccccgtct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31140993 108 + 173848474 ggcgcggtggctcacgcctgtaataccagcactttgggagtctggggcgggcggatcacgagatcaggagatggagaccatcctggctaacacggtgaagccccgtct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     647937 108 +   2037526 ggcgcggtggctcacgcctgtaataccagcactttgggagtctgaggcgggcggatcacgagatcaggagatggagaccatcctggctaacacggtgaagccccgtct
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31226758 108 + 172585720 ggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcggatcatgagttcaggagattgagaccatcctggctaacacagtgaaaccctgtct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30515772 108 - 170955103 ggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcggatcatgagttcaggagattgagaccatcctggctaacacagtgaaaccctgtct
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            30072313 108 -  71996105 ggcgtggtggttcacgcctgtaatcccagcactttgggaggctgaggcaggcggatcatgagttcaggagattgagaccatcctggctaacacggtgaaaccctgcct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      66175 108 +    779361 ggcgccgtggctcaagcctgtaatcccagcactttgggaggccgagacgggcggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtct
i manLeu1.NW_012106264v1   I 3445 C 0
s colAng1.NW_012115577v1     730482 108 -   1829203 ggcgcggtggctcacgcctgtaatcccagcagtttgggaggctgaggcaggcagatcacgacttcaggagattgagaccatcctggctaacgtgatgaagctctgtct
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            65410 820 -    750284 I
e otoGar3.GL873550           677723 471 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1314903 332 -   1771730 I
e calJac3.chr4             30896991 317 + 171630274 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e nomLeu3.chr1a            75316246 100 + 122973662 I

a score=57394.000000
s hg38.chr6_GL000254v2_alt  1871795 21 +   4827813 ctattaaaaatacaaaaaaaa-
s panTro5.chr6             30717462 21 + 175400573 ctattaaaaacacaaaaaaaa-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31141101 21 + 173848474 ctattaaaaacactaaaaaaa-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     648045 21 +   2037526 ctactaaaaatacaaaaaaaa-
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31226866 21 + 172585720 ctactaaaaatacaaaaaaaa-
i rheMac8.chr4             C 0 I 32
s macFas5.chr4             30515880 21 - 170955103 ctactaaaaatacaaaaaaaa-
i macFas5.chr4             C 0 I 10
s chlSab2.chr17            30072421 21 -  71996105 ctactaaaaatacaaaaaaaa-
i chlSab2.chr17            C 0 I 30
s manLeu1.NW_012106264v1      66283 21 +    779361 ctactaaaaaaatacaaaaaa-
i manLeu1.NW_012106264v1   C 0 I 1
s colAng1.NW_012115577v1     730590 21 -   1829203 ctactaaaaaaaaaaaaaaaa-
i colAng1.NW_012115577v1   C 0 I 27
s otoGar3.GL873550           678194 22 +  18854210 caatgacaactacaaccaaaaa
i otoGar3.GL873550         I 471 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            65410 820 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1314903 332 -   1771730 I
e calJac3.chr4             30896991 317 + 171630274 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e nomLeu3.chr1a            75316246 100 + 122973662 I

a score=-1294.000000
s hg38.chr6_GL000254v2_alt  1871816 1 +   4827813 -t
s panTro5.chr6             30717483 1 + 175400573 -t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31141122 1 + 173848474 -t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     648066 1 +   2037526 -t
i gorGor5.CYUI01015528v1   C 0 C 0
s otoGar3.GL873550           678216 1 +  18854210 a-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            65410 820 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1314903 332 -   1771730 I
e calJac3.chr4             30896991 317 + 171630274 I
e colAng1.NW_012115577v1     730611 27 -   1829203 I
e manLeu1.NW_012106264v1      66304 1 +    779361 I
e chlSab2.chr17            30072442 30 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30515901 10 - 170955103 I
e rheMac8.chr4             31226887 32 + 172585720 I
e nomLeu3.chr1a            75316246 100 + 122973662 I

a score=32157.000000
s hg38.chr6_GL000254v2_alt  1871817 25 +   4827813 tagccaggtgcggtggcaggcacct
s panTro5.chr6             30717484 25 + 175400573 tagccaggtgcggtggcaggtgcct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31141123 25 + 173848474 tagccaggtgcggtggcaggtgcct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     648067 25 +   2037526 tagccaggtgcggtggcaggcgcct
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             30515911 22 - 170955103 tagccgggcttggcaacaggcg---
i macFas5.chr4             I 10 C 0
s manLeu1.NW_012106264v1      66305 25 +    779361 tagccgggtgaggtggcaggcgcct
i manLeu1.NW_012106264v1   I 1 C 0
s otoGar3.GL873550           678217 25 +  18854210 tagctgggcgttgtggctggtgcct
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            65410 820 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1314903 332 -   1771730 I
e calJac3.chr4             30896991 317 + 171630274 I
e colAng1.NW_012115577v1     730611 27 -   1829203 I
e chlSab2.chr17            30072442 30 -  71996105 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e rheMac8.chr4             31226887 32 + 172585720 I
e nomLeu3.chr1a            75316246 100 + 122973662 I

a score=321492.000000
s hg38.chr6_GL000254v2_alt  1871842  95 +   4827813 gtagtcccagctacttggaaggctgaggcaggag-aatggtgtgaac-------------cttgcagtgagccgagatcacgccactgcactacagcctgggcaacaga
s panTro5.chr6             30717509  95 + 175400573 gtagttccagctacttgggaggctgaggcaggag-aatggtgtgaac-------------cttgcagtgagccgagatcgcgccactgcactacagcctgggcaacaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31141148  95 + 173848474 gtagttccagctacttgggaggctgaggcaggag-aatggtgtgaac-------------cttgcagtgagccgagatcgcgccactgcactacagcctgggcaacaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     648092  96 +   2037526 gtagtcccagctacttgggaggctgaggcaggagaaatggtgtgaac-------------cttgcagtgagccgagattgcgccactgccctacagcctgggcgacaga
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31226919 108 + 172585720 gtagtcccagctactcagaaggctgaggcaggag-aatggtgtgaacccgaaaggcagagcttgcagtgagccgagatcgcgctactgcacttcaacctgggggacaga
i rheMac8.chr4             I 32 C 0
s macFas5.chr4             30515933 108 - 170955103 gtagtcccagctactcagaaggctgaggcaggag-aatggtgtgaacccgaaaggcagagcttgcagtgagccgagatcgcgctactgcacttcaacctgggggacaga
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            30072472 108 -  71996105 gtagtcccagctactcagaaggctgaggcaggag-aatggtgtgaacccgaaaggcagagcttgcagtgagccgagatcgcgctactgcactccaacctgggggacaga
i chlSab2.chr17            I 30 C 0
s manLeu1.NW_012106264v1      66330 108 +    779361 gtagtcccagctactcgggaggctgaggcaggag-aatggcgtgaacccaggaggcggagcttgcagtgagctgagatcgcgccactgcactccagcctgggggacaga
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     730638 108 -   1829203 gtagtcccagctactcagaaggctgaggcaggag-aatggtgtgaacccgaaaggcagagcttgcagtgagccgagatcgtgccactgcactccagcctgggggacaga
i colAng1.NW_012115577v1   I 27 C 0
s otoGar3.GL873550           678242 105 +  18854210 atagtcccagctatttgggagtctgaggcaagag-aactgcttaagcccagaagttggaggttgctgtgagctg---taacgtcatagtactctacccacggcgacagc
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            65410 820 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1314903 332 -   1771730 I
e calJac3.chr4             30896991 317 + 171630274 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e nomLeu3.chr1a            75316246 100 + 122973662 I

a score=67266.000000
s hg38.chr6_GL000254v2_alt  1871937 32 +   4827813 gcgaaaccccgtctcaaaaaaaaaaaa----aaaga
s panTro5.chr6             30717604 29 + 175400573 gcgaaaccccgtctcaaaaaaaaaaaa----aa---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31141243 30 + 173848474 gcgaaaccccgtctcaaaaaaaaaaaa----aa--g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     648188 30 +   2037526 gcgaaaccccgtctcaaaaaaaaaaaa----aa--a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75316346 29 + 122973662 GCGAAACCCCATCTCaaaaaaaaaaag----aa---
i nomLeu3.chr1a            I 100 C 0
s rheMac8.chr4             31227027 15 + 172585720 gtgagaccccgtctc---------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30516041 30 - 170955103 gtgagaccccgtctcgaaaaaaaaaaaaaa------
i macFas5.chr4             C 0 C 0
s chlSab2.chr17            30072580 27 -  71996105 gtgagaccctgtctcgaaaaaaaaaaa---------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      66438 27 +    779361 gtgagaccccgtctcgaaaaaaaaaaa---------
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     730746 28 -   1829203 gtgagaccctgtctcgaaaaaaaaaTA---A-----
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           678347 32 +  18854210 ttaaggctctgtctcaaaaaaaaaaaa----aaaaa
i otoGar3.GL873550         C 0 I 249
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            65410 820 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1314903 332 -   1771730 I
e calJac3.chr4             30896991 317 + 171630274 I
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I

a score=302.000000
s hg38.chr6_GL000254v2_alt  1871969 2 +   4827813 aa
s panPan2.chr6             31141273 2 + 173848474 aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     648218 2 +   2037526 ag
i gorGor5.CYUI01015528v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            65410 820 -    750284 I
e otoGar3.GL873550           678379 249 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1314903 332 -   1771730 I
e calJac3.chr4             30896991 317 + 171630274 I
e colAng1.NW_012115577v1     730774 0 -   1829203 C
e manLeu1.NW_012106264v1      66465 0 +    779361 C
e chlSab2.chr17            30072607 0 -  71996105 C
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macNem1.NW_012012100v1     798603 14872 +   1495729 I
e macFas5.chr4             30516071 0 - 170955103 C
e rheMac8.chr4             31227042 0 + 172585720 C
e nomLeu3.chr1a            75316375 0 + 122973662 C
e panTro5.chr6             30717633 0 + 175400573 C

a score=443.000000
s hg38.chr6_GL000254v2_alt  1871971 1 +   4827813 g
s panTro5.chr6             30717633 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31141275 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     648220 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31227042 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     813475 1 +   1495729 g
i macNem1.NW_012012100v1   I 14872 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            65410 820 -    750284 I
e otoGar3.GL873550           678379 249 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1314903 332 -   1771730 I
e calJac3.chr4             30896991 317 + 171630274 I
e colAng1.NW_012115577v1     730774 0 -   1829203 C
e manLeu1.NW_012106264v1      66465 0 +    779361 C
e chlSab2.chr17            30072607 0 -  71996105 C
e cerAty1.NW_012002513v1      29557 6697 -    811324 I
e macFas5.chr4             30516071 0 - 170955103 C
e nomLeu3.chr1a            75316375 0 + 122973662 C

a score=22085.000000
s hg38.chr6_GL000254v2_alt  1871972 9 +   4827813 aaaaaaaaa
s panTro5.chr6             30717634 9 + 175400573 aaaaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31141276 9 + 173848474 aaaaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     648221 9 +   2037526 aaaaaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75316375 8 + 122973662 -aaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31227043 9 + 172585720 aaaaaaaaa
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     813476 9 +   1495729 aaaaaaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      36254 9 -    811324 AAAAAAAAA
i cerAty1.NW_012002513v1   I 6697 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            65410 820 -    750284 I
e otoGar3.GL873550           678379 249 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1314903 332 -   1771730 I
e calJac3.chr4             30896991 317 + 171630274 I
e colAng1.NW_012115577v1     730774 0 -   1829203 C
e manLeu1.NW_012106264v1      66465 0 +    779361 C
e chlSab2.chr17            30072607 0 -  71996105 C
e macFas5.chr4             30516071 0 - 170955103 C

a score=74653.000000
s hg38.chr6_GL000254v2_alt  1871981 14 +   4827813 agaaataacttctg
s panTro5.chr6             30717643 14 + 175400573 agaaataacttctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31141285 14 + 173848474 agaaataacttctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     648230 14 +   2037526 agaaataacttctg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75316383 14 + 122973662 agaaataaCTTCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31227052 14 + 172585720 aaaaataacttgtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30516071  9 - 170955103 -----taacttgtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     813485 14 +   1495729 aaaaaTAACTTGTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      36263 14 -    811324 AAAAATAACTTGTG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30072607 12 -  71996105 --taataacttgtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      66465 11 +    779361 ---aaTAACTTGTG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     730774  9 -   1829203 -----TAACTTGTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30897308 14 + 171630274 agaaataacttgca
i calJac3.chr4             I 317 C 0
s saiBol1.JH378327            66230 14 -    750284 AGAAATAACTTGCA
i saiBol1.JH378327         I 820 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           678379 249 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1314903 332 -   1771730 I

a score=80220.000000
s hg38.chr6_GL000254v2_alt  1871995 8 +   4827813 cacacatc
s panTro5.chr6             30717657 8 + 175400573 cacacatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31141299 8 + 173848474 cacacatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     648244 8 +   2037526 cacacatc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75316397 8 + 122973662 CACACATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31227066 8 + 172585720 cacacatc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30516080 8 - 170955103 cacacatc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     813499 8 +   1495729 CACACATC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      36277 8 -    811324 CACACATC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30072619 8 -  71996105 cacacatc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      66476 8 +    779361 CACACATC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     730783 8 -   1829203 CACACATC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30897322 8 + 171630274 cacacatc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            66244 8 -    750284 CACACATC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1315235 8 -   1771730 cacacatc
i cebCap1.NW_016107755v1   I 332 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           678379 249 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I

a score=2039205.000000
s hg38.chr6_GL000254v2_alt  1872003 233 +   4827813 ataacattcatacataa---------------------------tgaatcattgatatactcattaaaatgtgactcatccaggaaa----atcccatccctaaattatttaaag-tttttgttttccctcagctactat--ttctgttctaccttatgC-AAACTAATGAGAAACCATTGTCCCAAGACTGGTGGCCTCCTGGCATGGTTGTGCAACAGCTGTTGTCAAACTCCAGAGTCTA-AAGTGCACCACGAAAGCCAGATGGC
s panTro5.chr6             30717665 235 + 175400573 ataacattcatacataa---------------------------tgaatcattgatatactcattaaaatgtgactcatccaggaaa----atcccatccctaaattatttaaag-tttttgttttccctcagctactatatttctgttctaccttatgC-AAACTAATGAGAAACCATTGTCCCAAGACTGGTGGCCTCCTGGCATGGTTGTGCAACAGCTGTTGTCAAACTCCAGAGTCTA-AAGTGCACCACGAAAGCCAGATGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31141307 235 + 173848474 ataacattcatacataa---------------------------tgaatcattgatatactcattaaaatgtgactcatccaggaaa----atcccatccctaaattatttaaag-tttttgttttccctcagctactatatttctgttctaccttatgC-AAACTAATGAGAAACCATTGTCCCAAGACTGGTGGCCTCCTGGCATGGTTGTGCAACAGCTGTTGTCAAACTCCAGAGTCTA-AAGTGCACCACGAAAGCCAGATGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     648252 236 +   2037526 ataacattcatacataa---------------------------tgaatcattgatatactcattaaaatgtgactcatccaggaaa----atcccatccctaaattatttaaag-tttttgttttccctcagctactatatttctgttctaccttatgCAAAACTAGTGAGAAACCATTGTCCCAAGACTGGTGGCCTCCTGGCATGGTTGTGCAACAGCTGTTGTCAAACTCCAGAGTCTA-AAGTGCACCACGAAAGCCAGATGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75316405 234 + 122973662 AT-ACATTCATACATAA---------------------------TCAATCATTGATATACTCATTAAAATGTGACTCATCCAGGAAA----ATCCCATCCCTAAATTATTTAAAG-TTTTTGTTTTTCCTCAGCTACTATATTTCTGTTCTGCCTTACGC-AAACTAGTAAGAAACCATTGTCCCAAGACTGGTGGCCTCCTAGCGTGGTTGTGCAACAGCTGTTGTCAAACTCCAGACTCTA-AAGTGCACCACGAAAGCCAGATGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31227074 235 + 172585720 at-acattcatacataa------t--------------------tgaatcattgatgtgctcattaaaatgtgactcatccaggaaa----atcccttccctaaattatttaaag-tttttgttttccctcagctactatatttccattctacctcatgc-aaactagtGAGAAACCATTGTCCCAAGACTGGTGGCCTCCTAGCATGGTTGTGCAACGGCTGTTGTCAAACTCCAGAGTCTA-AAGTGCACCACGAAAGTCAGACGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30516088 235 - 170955103 at-acattcatacataa------t--------------------tgaatcattgatgtgctcattaaaatgtgactcatccaggaaa----atcccttccctaaattatttaaag-tttttgttttccctcagctactatatttccgttctacctcatgc-aaactagtGAGAAACCATTGTCCCAAGACTGGTGGCCTCCTAGCATGGTTGTGCAACGGCTGTTGTCAAACTCCAGAGTCTA-AAGTGCACCACGAAAGTCAGACGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     813507 235 +   1495729 AT-ACATTCATACATAA------T--------------------TGAATCATTGATGTGCTCATTAAAATGTGACTCATCCAGGAAA----ATCCCTTCCCTAAATTATTTAAAG-TTTTTGTTTTCCCTCAGCTACTATATTTCTGTTCTACCTCATGC-AAACTAGTGAGAAACCATTGTCCCAAGACTGGTGGCCTCCTAGCATGGTTGTGCAACGGCTGTTGTCAAACTCCAGAGTCTA-AAGTGCACCACGAAAGTCAGACGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      36285 235 -    811324 AT-ACATTCATACATAA------T--------------------TGAATCATTGATGTACTCATTAAAATGTGACTCATCCAGGAAA----ATCCCTTCCCTAAATTATTTAAAG-TTTTTGTTTTCCCTCAGCTACTATATTTCTGTTCTACCTCATGC-AAACTAGTGAGAAACCATTGTCCCAAGACTGGTGGCCTCCTAGCATGGTTGTGCAACAGCTGTTGTCAAACTCCAGAGTCTA-AAGTGCACCACGAAAGTCAGACGGC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30072627 235 -  71996105 at-acattcatacataa------t--------------------tgaatcatttatgtgctcattaaaatgtgactcatccaggaaa----atcccttccctaaattatttaaag-tttttgttttccctcagctactatatttctgttctacctcatgc-aaactagtGAGAAACCATTGTCCCAAGACTGGTGGCCTCCTAGCATGGTTGTGCAACGGCTGTTGTCAAACTCCAGAGTCTA-AAGTGCACCACGAAAGTCAGACGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      66484 235 +    779361 AT-ACATTCATACATAA------T--------------------TGAATCATTGATGTACTCATTAAAATGTGACTCATCCAGGAAA----ATCCCTTCCCTAAATTATTTAAAG-TTTTTGTTTTCCCTCAGCTACTATATTTCTGTTCTACCTCATGC-AAACTAGTGAGAAACCATTGTCCCAAGACTGGTGGCCTCCTAGCATGGTTGTGCAACAGCTGTTGTCAAACTCCAGAGTCTA-AAGTGCACCACGAAAGTCAGACGGC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     730791 235 -   1829203 AT-ACATTCATGCATAA------T--------------------TGAATCATTGATGTACTCATTAAAATGTGACTCATCCAGGAAA----ATCCCTTCCCTAAATTATTTAAAG-TTTTTGTTTTCCCTCAGCTACTATATTTCTGTTCTACTTCATAC-AAACTAGTGAGAAACCATTGTCCCAAGACTGGTGGCCTCCTAGCATGGTTGTGCAACAGCTGTTGTCAAACTCCAGAGTCTA-AAGTGCACCACGAAAGTCAGAGGGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30897330 212 + 171630274 at-acattcatacataa------c--------------------tgagtcattgatgtactcattaaaatgtgatgcatccaggaaa----atcccatctctaaattatataaaactttttgttttccttcagctactatatttctgttctcccttatgC--AA------------CATTGTCCC----------GTCTGCCAGCATGGTTGAGCAGCAGCTGTTGTCAAACTGCAGAGTACA-AAGTGCACCGTAAAAGACAGATGG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            66252 230 -    750284 AT-ACATTCATATATAACTGAATC--------------------TGAATCATTGATGTACTCATTGAAATGTGACACATCCAGGAAA----ATCCCTTCTCTAAATTATGTAAAACTCTTTGTTTTCCTTCAGCTACTCTATTTCTGTTCTCCCTTATGT-GAA------------CATGATCCCAAGGCTGCTGGTCTGCCAACGTGGTTGAGCAACAGCTGTTGTCAAACTCCAGAGTCTA-AAGGGCACCGTAGAAAACAGATGGC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1315243 223 -   1771730 at-acattcatacataa------c--------------------tgaatcattgaggtactcattaacatgtgatacatccaggaaa----atcccatctctaaattgtgtataactttttgttttccttcagctactatacttctgttctcccttatgC-AAA------------CATGGTCCCAAGACTGCTGGTCTGCCAGCATGGTTGAGCAGCAGCTGTTG-CAAACTCCAGAGTCTA-AAGTGCACTGTAAAAAACAGATGGC
i cebCap1.NW_016107755v1   C 0 I 21
s otoGar3.GL873550           678628 253 +  18854210 ataacaggcacacatag------catatatccaaagggaagaagtgcatcatcgaagtactcattaaaatgtgactcatccaggaaaatctatctcatcagtaaattatgtaaaagatttcgtctcccttcagctgttatatttcTG------CTTATGC-AAACAAATGAGAAACCAT-GTCCCAAGCCTGGTGGTCCTTTGTC-TGGTTGTGCAGCAGCTGTTGTCACACT-CAGAGGCTAGAGGTCCACCAGGAAAGACAGATGGT
i otoGar3.GL873550         I 249 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I

a score=169027.000000
s hg38.chr6_GL000254v2_alt  1872236 26 +   4827813 -AGGCCAGATCCAGCCTCCCTGCTAAA
s panTro5.chr6             30717900 26 + 175400573 -AGGCCAGATCCAGCCTCCCTGCTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31141542 26 + 173848474 -AGGCCAGATCCAGCCTCCCTGCTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     648488 26 +   2037526 -AGGCCAGATCCAGCTTCCCTGCTAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75316639 26 + 122973662 -AGGCCAGATCCAGCTTCCCTGCTAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31227309 26 + 172585720 -AGGCCAGATCCAGCTTCTTTGCTGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30516323 26 - 170955103 -AGGCCAGATCCAGCTTCTTTGCTGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     813742 26 +   1495729 -AGGCCAGATCCAGCTTCTTTGCTGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      36520 26 -    811324 -AGGCCAGATCCAGCTTCCTTGCTGAA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30072862 26 -  71996105 -AGGCCAGATCCAGCTTCCTTGCTGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      66719 26 +    779361 -AGGCCAGATCCAGCTTCCTTGCTGAA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     731026 26 -   1829203 -AGGCCAGATCCAGCTTCCTTGCTGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30897542 21 + 171630274 -----CAGATCCGCCTTCCTTGCTGG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            66482 25 -    750284 -AGCCCAGATCCGCCTTCCTTGCCAG-
i saiBol1.JH378327         C 0 C 0
s otoGar3.GL873550           678881 23 +  18854210 AGGACAGGATCGAGAT----TGCTGAG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1315466 21 -   1771730 I

a score=2434340.000000
s hg38.chr6_GL000254v2_alt  1872262 265 +   4827813 TGAAATGTTCACTGGCCAGGGAGAAACAACCACGTGGAAAATTAAATAAACCCATGACATTTGTAGCCAGCAGCTCGGGTGTTTTGTAGGGTTTTCCCTGAGAAGTGGGGACTAATCGCATGAATCACTT------TTTTTTT-----CTTTTTAGAGTCTTATCTATTTGTGAAT---AAATGTTTCCAATTAAAGCATTGCTActaagcctcagttttctcacctctaccatggagttaaaat-gtctacttcac----actgtccataaaagaattaaGAT
s panTro5.chr6             30717926 266 + 175400573 TGAAATGTTCACTGGCCAGGGAGAAACAACCACGTGGAAAATTAAATAAACCCATGACATTTGTAGCCAGCAGCTCGGGTGTTTTGTAGGGTTTTCCCTGAGAAGTGGGGACTAATCGCATGAATCACTT------TTTTTTT----TCTTTTTGGAGTCTTATCTATTTGTGAAT---AAATGTTTCCAATTAAAGCATTGCTActaagcctcagttttctcacctctaccatggagttaaaat-gtctacttcac----actgtccataaaagaattaaGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31141568 265 + 173848474 TGAAATGTTCACTGGCCAGGGAGAAACAACCACGTGGAAAATTAAATAAACCCATGACATTTGTAGCCAGCAGCTCGGGTGTTTTGTAGGGTTTTCCCTGAGAAGTGGGGACTAATCGCATGAATCACTT------TTTTTTT-----CTTTTTGGAGTCTTATCTATTTGTGAAT---AAATGTTTCCAATTAAAGCATTGCTActaagcctcagttttctcacctctaccatggagttaaaat-gtctacttcac----actgtccctaaaagaattaaGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     648514 265 +   2037526 TGAAATGTTCACTGGCCAGGGAGAAACAACCACGTGGAAAATTAAATAAACCCATGACATTCGTAGCCAGCAGCTCGGGTGTTTTGTAGGGTTTTCCCTGAGAAGTGGGGACTAATCGCATGAATCACTT------TTTTTTT-----TCTTTTAGAGTCTTATCTATTTGTGAAT---AAATGTTTCCAATTAAAGCATTGCTActaagcctcagttttctcacctctaccatggagttaaaat-gtctacttcac----actgtccataaaagaattaaGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75316665 270 + 122973662 TGAAATGTTCACTGGTCAGGGAGAAACAACCACGTGGAAAATTAAACAAACCCATGACATTCATAGCCAGCAGCTCGGGTGTTTTGTAGGGTTTTCCCTGAGAAGTAGGGACTAATCGCATGAATCACTC------TTTTTTTTTTGTCTTTTTAGAGTCTTATCTATTTGTGAAT---AAATGTTTCCAATTAAAGCATTGCTActaagcctcagttttctcacctctaccatggagttaaaat-gtctactgcac----actgtccataaaagaattaagat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31227335 269 + 172585720 TGAAATGTTCACTGGCCAGGGAGAAACAACCAAGTGGAAAATTAAATAAACCCATGACATTCATAGCCAGCAGCTCGTGTGTTTTGTGGGGTTTTCCCTGAGAAGTGGGGACTAATCACATGAATCACTCttttttttttttt-----ctttttAGAATCTTATCTATTTGTGAAT---AAATGTTTCCAATTAAAGCATTGCCACTAAGCCT--GTTTTCTCACCTCTACCATGGAGTTAAAGT-GTCTATTTCAC----ACTGTCCATAAAAGAATTAAGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30516349 269 - 170955103 TGAAATGTTCACTGGCCAGGGAGAAACAACCAAGTGGAAAATTAAATAAACCCATGACATTCATAGCCAGCAGCTCGTGTGTTTTGTGGGGTTTTCCCTGAGAAGTGGGGACTAATCACATGAATCACTCttttttttttttt-----ctttttAGAATCTTATCTATTTGTGAAT---AAATGTTTCCAATTAAAGCATTGCCACTAAGCCT--GTTTTCTCACCTCTACCATGGAGTTAAAGT-GTCTATTTCAC----ACTGTCCATAAAAGAATTAAGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     813768 268 +   1495729 TGAAATGTTCACTGGCCAGGGAGAAACAACCAAGTGGAAAATTAAATAAACCCATGACATTCATAGCCAGCAGCTCGTGTGTTTTGTGGGGTTTTCCCTGAGAAGTGGGGACTAATCGCATGAATCACTC-TTTTTTTTTTTT-----CTTTTTAGAATCTTATCTATTTGTGAAT---AAATGTTTCCAATTAAAGCATTGCCACTAAGCCT--GTTTTCTCACCTCTACCATGGAGTTAAAGT-GTCTATTTCAC----ACTGTCCATAAAAGAATTAAGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      36546 267 -    811324 TGAAATGTTCACTGGCCAGGGAGAAACAACCACGCGGAAAATTAAATAAACCCATGACATTCATAGCCAGCAGCTCGGGTGTTTTGTAGGGTTTTCCCTGAGAAGTGGGGACTAATCGCATGAATCACTC--TTTTTTTTTTT-----CTTTTTAGAATCTTATCTATTTGTAAAT---AAATGTTTCCAATTAAAGCATTGCCACTAAGCCT--GTTTTCTCACCTCTACCATGGAGTTAAAGT-GTCTATTTCAC----ACTGTCCATAAAAAAATTAAGAT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30072888 266 -  71996105 TGAAATGTTCACTGGCCAGGGAGAAACAACCAAGTGGAAAATTAAATAAACCCATGACATTCATAGCCAGCAGCTCGTGTGTTTTGTAGGGTTTTCCCTGAGAAGTGGGGACTAATCGCATGAATCACTC---TTTTTTTTTT-----CTTTTTAGAATCTTATCTATTTGTGAAT---AAATGTTTCCAATTAAAGCATTGCCACTAAGCCT--GTTTTCTCACCTCTACCACGGAGTTAAAGT-GTCTATTTCAC----ACTGTCCATAAAAGAATTAAGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      66745 267 +    779361 TGAAATGTTCACTGGCCAGGGAGAAACAACCACGCGGAAAATTAAATAAACCCATGACATTCATAGCCAGCAGCTCGGGTGTTTTGTAGGGTTTTCCCTGAGAAGTGGGGACTAATCGCATGAATCACTC--TTTTTTTTTTT-----CTTTTTAGAATCTTATCTATTTGTAAAT---AAATGTTTCCAATTAAAGCATTGCCACTAAGCCT--GTTTTCTCACCTCTACCATGGAGTTAAAGT-GTCTATTTCAC----ACTGTCCATAAAAGAATTAAGAT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     731052 255 -   1829203 TGAAATGTTCACTGGCCCGGGAGAAACAACCACGTGGAAAATTAAATAAACCCATGACATTCATAGCCAGCAGCTCGTGTGTTTTATAGGGTTTTCCCTGAGAAGTGGGGACTAATCGCATGAATCACTC----TTTTTTTTT-----CTTTTTACAGTCTTATCT-TTTGTGAAT---AAATGTTTCCAATTAAAGCATTGCCACTAAGCCT--GTTTTCTCACCTCTACCATGGAGTTAAAGT-GTCTATTTCAC----ACTGTCCATAAAAg---------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30897563 261 + 171630274 TGAAATGTTCACTGACCAGGGAGAAACAACCACGTGGAAAATTAAATAAACCCATGACATTCATATCTAGCAGCTCTGGT--TTTGTAGGGTTTCCCCTGAGAAGT-GGGACTATTTGCATGAGTCACTC-------TTTTTT-----CTTTTTAGAGTCTTCTCTATTTGTGAAT---AAATGTTTCCAATTAAAACATTGCTActaagcctcagttttctcacctctaccatggagttaaaat-gtctacttcac----actgtccatagaagaattaagat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            66507 254 -    750284 CGAAATGTTCACTGACCAGGGAGAAACAACCACGTGGAAAACTAAATAAACCCATGACATTCATATCCAGCAGCTCGGGT----------GTTTCCCCTGAGAGGTGGGGACTATTTGCAAAAGTCACTC-------TTTTTT-----CTTTTTAGAGTCTTATCTATTTGTGAAT---AAATGTTTCCAATTAAAACATTGCTtctaagcctcagttttctcacctctaccatggagttaaaat-gtctacttcac----actgtccataaaagaattaaaat
i saiBol1.JH378327         C 0 I 1
s cebCap1.NW_016107755v1    1315487 262 -   1771730 CGAAATGTTCACTGACCAGGGAGAAACAACCACATGGAAAATTAAATAAACCCATGACATTCATATCTAGCAGCTCGGATGTTTTGTAGAGTTTCCCCTGAGAAGTGGGGACTATGTGCATGAGTCA--C-------GTTTTT-----CTTTTTAGAGTCTTATCTATTTGTGAAT---AAATGTTTCCAATTAAAACATTGCTActaggcctcagttttctcacctctgccatggagttaaaat-gtctacttcac----actgtccataaaagaattaagat
i cebCap1.NW_016107755v1   I 21 I 1
s otoGar3.GL873550           678904 259 +  18854210 TGAAATGTTCACCAGTCAGTGAGAAACAACCATGTGGAAAATGAGATAAACTCATAACATTCATATCTAGTAGCTCCAGTGTTTTGT-GGGTTTTCCCTGAGAAGTGGAAACAAAC----TGTGCCACTT------TTTTTTT--------------ATTTTACCTATTTATGAGTAAGAAATGTTTCCAGTGAAAGCATCGCTATAAAgtctcaggtttttcacctccaaggtggagttgtaataacctacctcattttaattgttgtttaaagaattaaaag
i otoGar3.GL873550         C 0 I 113
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I

a score=2080283.000000
s hg38.chr6_GL000254v2_alt  1872527 295 +   4827813 ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcggacggatcac--gaggtcaggagatcgagaccatcctggctaacacagtg-aaaccccgtctctactaaaaatatgaaaaactagcctggcgtggtggtggacgcctgtagtcccagctactcaggaggctaaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagcctagattgtgccactgcactccagcctgggcgac-agagcaagactccgtctc-------aaaa--aaaaaaaa--------------------------aa
s panTro5.chr6             30718192 295 + 175400573 ggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcggacggatcac--gaggtcaggagatcgagaccatcctggctaacacagtg-aaaccccgtctctactaaaaatatgaaaaattagcctggcgtggtggtggacgcctgtagtcccagctactcaggaggctaaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagcctagattgtgccactgcactccagcctgggtgac-agagcaagactccgtctc-------aaaa--aaaaaaaa--------------------------aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31141833 292 + 173848474 ggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcggacggatcac--gaggtcaggagatcgagaccatcctggctaacacagtgaaaaccccgtctctactaaaaatatgaaaaattagcctggcgtggtggtggatgcctgtagtcccagctactcaggaggctaaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagcctagattgtgccactgcactccagcctgggcgac-agagcaagactccgtctc-------------aaaaaaaa--------------------------aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     648779 292 +   2037526 ggccgggcgtggtggctcactcctgtaatcccaggactttgggaggccgaggcggacggatcac--gaggtcaggagatcgagaccatcctggctaacatagtg-aaaccccgtctcgactaaaaatacgaaaaattagcctggcgtggtggtggacccctgtagtcccagctactcaggaggctaaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagcctagattgtgccactgcactccagcctgggcgac-agagcaagactccgtctc----------a--aaaaaaaa--------------------------aa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75316935 297 + 122973662 ggctgggcgtggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcagatcac--gaggtcaggagatcgagaccatcctggctaacacggtg-aaaccccgtctctactaaaaatacaaaaaattagcctggcgtggtggtggatgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgaagtgagccgagattgtgccactgcactccagcctgggcaac-agagcaagactctgtctcaa-----aaaa--aaaaaaaa--------------------------aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31227604 309 + 172585720 ggccgggcgcggtggctcacgcctataatcctagcactttgggagaccgaggtggacagatca----------------cgagaccatcctggctaacatggtg-aaaccctgtctctactaaaaatacaaaaaattagcctggcatggtggtgggcgcctgtagtcccagctactcgggaggctgaggcagaagtatggcgtgaacccaggaggcggagcttgcagtgagccaagattgtgccactgcactccagcctgcacaac-agagcaagactccgtctcaaaaaataaat--aaataaat-----aaaataaaataaaataaaaataa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30516618 309 - 170955103 ggccgggcgcggtggctcacgcctataatcctagcactttgggagaccgaggtggacagatca----------------cgagaccatcctggctaacatggtg-aaaccctgtctctactaaaaatacaaaaaattagcctggcatggtggtgggcgcctgtagtcccagctactcgggaggctgaggcagaagtatggcgtgaacccaggaggcggagcttgcagtgagccaagattgtgccactgcactccagcctgcacaac-agagcaagactccgtctcaaaaaataaat--aaataaat-----aaaataaaataaaattaaaataa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     814036 309 +   1495729 ggccgggcgcggtggctcacgcctataatcctagcactttgggagaccgaggtggacagatca----------------cgagaccatcctggctaacatggtg-aaaccctgtctctactaaaaatacaaaaaattagcctggcatggtggtgggcgcctgtagtcccagctactcgggaggctgaggcagaagtatggcgtgaacccaggaggcggagcttgcagtgagccaagattgtgccactgcactccagcctgcacaac-agagcaagactccgtctcaaaaaataaat--aaataaat-----aaaaTTAAATTAAATTAAAATAa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      36813 310 -    811324 ggccgggcgcagtggctcacgcctgtaatcctagcactttgggagaccgaggcggacagatca----------------cgagaccatcctggctaacatggtg-aaaccctgtctctactaaaaatacaaaaaattagcctggcatggtggcaggcgcctgtagtcccagctactcgggaggctgaggcagaagtatggcgtgaacccaggaggcggagcttgcagtgagccaagattgtgccactgcactccagcttgcacgac-agagcaagactccgtctcaaaaaataaataaaaataaat------aaataaaataaaataaaaataa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30073154 314 -  71996105 ggccgggcccggtggctcacgcctataatcctagcactttgggaggccgaggcggacagatca----------------cgagaccatcctggctaacatggtg-aaaccctgtctctactaaaaatacaaaaaattagcctggcatggtggtgggcgcctgtagtcccagctactcgggaggctgaggcagaagtatggcgtgaacccaggaggcggagcttgcagtgagccaagattgtgccactgcactccagcctgcacgac-agagcaagactccgtctcaaaaaataaat--aaataaataaataaaaaTAAAATAAAATAAAAATAa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      67012 308 +    779361 ggccgggcgcagtggctcacgcctgtaatcctagcactttgggagaccgaggcggacagatca----------------cgagaccatcctggctaacatggtg-aaaccctgtctctactaaaaatacaaaaaattagcctggcatggtggcaggcgcctgtagtcccagctactcgggaggctgaggcagaagtatggcgtgaacccaggaggcggagcttgcagtgagccaagattgtgccactgcactccagcttgcacgac-agagcaagattccgtctcaaaaaataaat--aaaTTAAT------TAATTAAATTAAAtaaaaataa
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     731307 309 -   1829203 ---------cggtggctcacgcctgtaatctcagcactttgggagaccgaggcaggcagatcac--gaggtcaggagatcgagaccatcctggctaacatggca-aaaccccatctctactaaaaatacaaaaaattagcctggcgtggtggtgggcgcctgtagtctcagctactcgggaggctgaggcagaagtatggcgtgaacccaggaggcggagcttgcagtgagccgagattgtgccactgcactccagcttgcatgag-agagcaagactccatctcaaaaaataaat--aaataaat----------aaaataaaataaaaataa
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            66762 296 -    750284 agccaggaccagtggctcatgtctgtaatcccagccttttgggaggccaaggtgggcggatcac--gaggtcaggagttcgagaccagcctgattaacatggtg-aaaccctgtctctactaaaaatacaaaaaattagctggatgtggtggtgcatacctggaatccccgctgctcaggaggctgaggcaggagaattgctagaacccaggaggcgaaggttgcagtgagctgaggtcgtgccattgcaccccagcctgggcaacaagagcaaaactccatctcaaaaaaataaa--aaa---------------------------------
i saiBol1.JH378327         I 1 C 0
s cebCap1.NW_016107755v1    1315750 296 -   1771730 agccaggaccagtggctcacgtctgtaatcccagcactttgggaggccaaggtgggcggatcac--gaggtcaggaggttgagaccagcctgattaacacagtg-aaaccctgtctctactaaaaacacaaaaaattagctgggcttggtggtgcatgcctgtaatccccgctactcaggaggctgaggcaggagaattgcttgaactcgggaggcggaggttgcagtgagctgaggtcgtgccattgtactccagcctgggcaacaagagcaaaactccatctcaaaaaaaaaaa--aaa---------------------------------
i cebCap1.NW_016107755v1   I 1 C 0
s otoGar3.GL873550           679276 279 +  18854210 ggctgagcgaggtggctcatgtctgtaatcccagcactctgggaggctgaggcaggtggattgcctgagctcatgagtttgagaccaaccca--cgccagagca-agacctcatct---ttaaaaatac----------ctgggagttgtggcaggtacctgtagtcccagctacatgcgaggctgaggcaagaggatcacttaagcccaaaaaattgaagttgctatgagctgtga---cgctatggcactctaccaagggtgac-aaagtgagactctgtctcaaaataataac--aaa---------------------------------
i otoGar3.GL873550         I 113 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e calJac3.chr4             30897824   0 + 171630274 C

a score=34069.000000
s hg38.chr6_GL000254v2_alt  1872822 6 +   4827813 aaaaaa-
s panTro5.chr6             30718487 6 + 175400573 aaaaaa-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31142125 6 + 173848474 aaaaaa-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     649071 6 +   2037526 aaaaaa-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75317232 6 + 122973662 aaaaaa-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31227913 6 + 172585720 aaAAGA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30516927 6 - 170955103 aaAAGA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     814345 6 +   1495729 aaaaga-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      37123 6 -    811324 aaaaga-
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30073468 6 -  71996105 aaaaga-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      67320 6 +    779361 aaaaga-
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     731616 6 -   1829203 aaaaga-
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1    1316046 6 -   1771730 aaaaaa-
i cebCap1.NW_016107755v1   C 0 I 2
s otoGar3.GL873550           679555 6 +  18854210 -aacaaT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            67058 0 -    750284 C
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e calJac3.chr4             30897824 0 + 171630274 C

a score=15734.000000
s hg38.chr6_GL000254v2_alt  1872828 9 +   4827813 aaaaaaaaa----
s panTro5.chr6             30718493 5 + 175400573 aTTAA--------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31142131 5 + 173848474 aTTAA--------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     649077 5 +   2037526 aTTAA--------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75317238 5 + 122973662 aTTAA--------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31227919 5 + 172585720 ATTaa--------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30516933 5 - 170955103 Attaa--------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     814351 5 +   1495729 attaa--------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      37129 5 -    811324 attaa--------
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30073474 5 -  71996105 attaa--------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      67326 5 +    779361 attaa--------
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     731622 5 -   1829203 attaa--------
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           679561 9 +  18854210 AATAA----TGGA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            67058 0 -    750284 C
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1316052 2 -   1771730 I
e calJac3.chr4             30897824 0 + 171630274 C

a score=6672.000000
s hg38.chr6_GL000254v2_alt  1872837 6 +   4827813 aaaaaa
s nomLeu3.chr1a            75317243 3 + 122973662 ---GAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31227924 3 + 172585720 ---gat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30516938 3 - 170955103 ---gat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     814356 3 +   1495729 ---gat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      37134 3 -    811324 ---gat
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30073479 3 -  71996105 ---gat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      67331 3 +    779361 ---gat
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     731627 3 -   1829203 ---gat
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            67058 0 -    750284 C
e otoGar3.GL873550           679570 0 +  18854210 C
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1316052 2 -   1771730 I
e calJac3.chr4             30897824 0 + 171630274 C
e gorGor5.CYUI01015528v1     649082 0 +   2037526 C
e panPan2.chr6             31142136 0 + 173848474 C
e panTro5.chr6             30718498 0 + 175400573 C

a score=1328670.000000
s hg38.chr6_GL000254v2_alt  1872843 222 +   4827813 aagccaggcatggttggtggctcacacctgtaatctcagaactttgggaaac--aggc----aggatcacttcagcccagaagtgtgggaccagtctgggcaacatagtgagatcctgtctcttaaaaaaaaa----------------aagaaaAGAATCAAAATAAAACAAGAAAACAAAAACACAGAACAAGTGCATCATCATAGTGGTGACAATTTTTAGGAAACTTTTTTTGTTTTTT-T
s panTro5.chr6             30718498 218 + 175400573 --gccaggcatggttggtggctcacacctgtaatctcagaactttgggaaac--aggc----aggatcacttcagcccagaagtgtgggaccagtctgggcaacatagtgagatcctgtctcttaaaaaaaaa------------------gaaaaGAATCAAAATAAAACAAGAAAACAAAAACACAGAACAAGTGCGTCATCATAGTGGTGACAATTTTTAGGAAACTTTTTTTGTTTTTT-T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31142136 217 + 173848474 --gccaggcatggttggtggctcacacctgtaatctcagaactttgggaaac--aggc----aggatcacttcagcccagaagtgtgggaccagtctgggcaacatagtgagatcctgtctcttacaaaaaaa------------------gaaaaGAATCAAAATAAAACAAGAAAACAAAAACACAGAACAAGTGCGTCATCATAGTGGTGACAATTTTTAGGAAAC-TTTTTTGTTTTTT-T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     649082 218 +   2037526 --gccaggcatggttggtggctcacacctgtaatctcagaactttgggaaac--aggc----aggatcacttcagcccagaagtgtgggaccagtctgggcaacatagtgagatcctgtctcttaaaaaaaaa------------------gaaaaGAATCAAAATAAAACAAGAAAACAAAAACACAGAACAAGTGCGTCATCATAGTGGTGACAATCTTTAGGAAACTTTTTTTGTTTTTT-T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75317246 218 + 122973662 AAGCCAGGCATGATTggtggctcacgcctgtaatctcagaactttgggagac--aggc----aggatcacttcagcccagaagtgtcggaccagtctggtcaatatagtgagatcctgtctcttaaaaaaaa-------------------gaaaagaatcaaaataaaaCAAGAAAACAAAAACACAGAACAAGTGTGTCATCATAGTGGTAACAATTTTTAGGAAAC-TTTTTTGTTTTTT-T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31227927 218 + 172585720 aagccaggcatggttggtggttcacgcctgtaatcccagaactttgggagac--aggc----aggatcacttcagcccagaagtgtgagaccagtctgggcaacatagtgagaccctatctcttaaaacaaa-------------------gaaaagaATCAAAATAAAACAAGAAAACAAAAACACAGAACAACTGCGTCATCATGGTGGTGACAATTTTTAGGAAACATTTTTTGTTTTTT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30516941 218 - 170955103 aagccaggcatggttggtggttcacgcctgtaatcccagaactttgggagac--aggc----aggatcacttcagcccagaagtgtgagaccagtctgggcaacatagtgagaccctatctcttaaaacaaa-------------------gaaaagaaTCAAAATAAAACAAGAAAACAAAAACACAGAACAACTGCGTCATCATAGTGGTGACAATTTTTAGGAAACATTTTTTGTTTTTT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     814359 218 +   1495729 aagccaggcatggttggtggttcacgcctgtaatcccagaactttgggagac--aggc----aggatcacttcagcccagaagtgtgagaccagtctgggcaacatagtgagaccctatctcttaaaacaaa-------------------gaaaagaATCAAAATAAAACAAGAAAACAAAAACACAGAACAACTGCGTCATCATAGTGGTGACAATTTTTAGGAAACATTTTTTGTTTTTT--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      37137 222 -    811324 aagccaggcatggttggtggttcacgcctgtaatcccagaactttgggagac--aggcaggaaggatcacttcagccgagaagtgtgagaccagtctgggcaacatagtgagaccctatctcttaaaacaaa-------------------gaaaagaaTCAAAATAAAACAAGAAAACAAAAACACAGAACAACTGCGTCATCATAGTGGTGACAATTTTTAGGAAACATTTTTTGTTTTAT--
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30073482 216 -  71996105 aagccaggcatggttggtggttcacgcctgtaatcccagaactttgggagac--aggc----aggatcacttcagcccagaagtgtgagaccagtctgggcaacatagtgagaccctatctcttaaaacaaa-------------------gaaaagaaTcaaaataaaacaagaaaacaaaa--acagaacaaCTGCATCATCATAGTGGTGACAATTTTTAGGAAACATTTTTTGTTTTTT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      67334 204 +    779361 aagccaggcatggttggtggttcacgcctgtaatcccagaactttgggagac--aggc----aggatcacttcagc--------------ccagtctgggcaacatagtgagaccctatctcttaaaacaaa-------------------gaaaagaATCAAAATAAAACAAGAAAACAGAAACACAGAACAACTGCGTCATCATAGTGGTGACAATTTTTAGGAAACATTTTTTGTTTTTT--
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     731630 219 -   1829203 aagccaggcatggttggaggttcacacctgtaatcccagaattttgggagac--aggc----aggatcacttcagcccagaagtgtgagaccagtctgggcaacatagtgagactctatctcttaaatcaaa-------------------gaaaagaatcaaaataaaacaagaaaacaacaacacagaacaacCGCGTCACCATGATGGTAACAATTTTTAGGAAACtttttgtgttttttt-
i colAng1.NW_012115577v1   C 0 M 1149
s calJac3.chr4             30897824 225 + 171630274 aagccag----gaccagtggctcacgtctgtaatcccagaactttgggagacagaggc----aggatcacttcaacccaggagtgtgagactagtctgggcaacatagtgagaccctgtctcttaaaaaaaaaaaaaaaGAAAGAAAGAAAGAAAAGAATCAAACTAAAACA-------AAAAACACAGAACAAGTGCGTCATCATAGTGCTGATAATTTTTAAGAAACTTTTTTTTTTC-----
i calJac3.chr4             C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            67058   0 -    750284 C
e otoGar3.GL873550           679570   0 +  18854210 C
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1316052   2 -   1771730 I

a score=102025.000000
s hg38.chr6_GL000254v2_alt  1873065 17 +   4827813 CTGTGTGAACCTAACTC
s panTro5.chr6             30718716 17 + 175400573 CTGTGTGAACCTAACTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31142353 17 + 173848474 CTGTGTGAACCTAACTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     649300 17 +   2037526 CTGTGTGAACCTAACTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75317464 17 + 122973662 CTGTGTGAACCTAACTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31228145 17 + 172585720 CTGTGTGAACCTAACTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30517159 17 - 170955103 CTGTGTGAACCTAACTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     814577 17 +   1495729 CTGTGTGAACCTAACTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      37359 17 -    811324 CTGTGTGAACCTAACTG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30073698 17 -  71996105 CTGTGTGAACCTAACTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      67538 17 +    779361 CTGTGTGAACCTAACTG
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30898049 17 + 171630274 CTGTGTGAAACTAACTG
i calJac3.chr4             C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            67058  0 -    750284 C
e otoGar3.GL873550           679570  0 +  18854210 C
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1316052  2 -   1771730 I
e colAng1.NW_012115577v1     731849 1149 -   1829203 M

a score=64428.000000
s hg38.chr6_GL000254v2_alt  1873082 10 +   4827813 ATCTAATAAG
s panTro5.chr6             30718733 10 + 175400573 ATCTAATAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31142370 10 + 173848474 ATCTAATAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     649317 10 +   2037526 ATCTCATAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75317481 10 + 122973662 ATCTAATAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31228162 10 + 172585720 ATCTAATAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30517176 10 - 170955103 ATCTAATAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     814594 10 +   1495729 ATCTAATAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      37376 10 -    811324 ATCTAATAAG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30073715 10 -  71996105 ATCTAATAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      67555 10 +    779361 ATCTAATAAG
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30898066 10 + 171630274 ATCGAATAAG
i calJac3.chr4             C 0 C 0
s otoGar3.GL873550           679570 10 +  18854210 ATTTAATAGG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            67058  0 -    750284 C
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1316052  2 -   1771730 I
e colAng1.NW_012115577v1     731849 1149 -   1829203 M

a score=13715.000000
s hg38.chr6_GL000254v2_alt  1873092 2 +   4827813 GG
s panTro5.chr6             30718743 2 + 175400573 GG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31142380 2 + 173848474 GG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     649327 2 +   2037526 GG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75317491 2 + 122973662 GG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31228172 2 + 172585720 GG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30517186 2 - 170955103 GG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     814604 2 +   1495729 GG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      37386 2 -    811324 GG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30073725 2 -  71996105 GG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      67565 2 +    779361 GG
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30898076 2 + 171630274 GG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            67058 2 -    750284 gt
i saiBol1.JH378327         C 0 C 0
s otoGar3.GL873550           679580 2 +  18854210 AG
i otoGar3.GL873550         C 0 I 1
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1316052 2 -   1771730 I
e colAng1.NW_012115577v1     731849 1149 -   1829203 M

a score=20055.000000
s hg38.chr6_GL000254v2_alt  1873094 2 +   4827813 AG
s panTro5.chr6             30718745 2 + 175400573 AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31142382 2 + 173848474 AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     649329 2 +   2037526 AG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75317493 2 + 122973662 AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31228174 2 + 172585720 AG
i rheMac8.chr4             C 0 I 13
s macFas5.chr4             30517188 2 - 170955103 AG
i macFas5.chr4             C 0 I 13
s macNem1.NW_012012100v1     814606 2 +   1495729 AG
i macNem1.NW_012012100v1   C 0 I 13
s cerAty1.NW_012002513v1      37388 2 -    811324 AG
i cerAty1.NW_012002513v1   C 0 I 13
s chlSab2.chr17            30073727 2 -  71996105 AG
i chlSab2.chr17            C 0 I 13
s manLeu1.NW_012106264v1      67567 2 +    779361 AG
i manLeu1.NW_012106264v1   C 0 I 158
s calJac3.chr4             30898078 2 + 171630274 AG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            67060 2 -    750284 ag
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1316054 2 -   1771730 AG
i cebCap1.NW_016107755v1   I 2 C 0
s otoGar3.GL873550           679583 2 +  18854210 AG
i otoGar3.GL873550         I 1 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e colAng1.NW_012115577v1     731849 1149 -   1829203 M

a score=-1349.000000
s hg38.chr6_GL000254v2_alt  1873096 1 +   4827813 T
s panTro5.chr6             30718747 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31142384 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     649331 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75317495 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31228189 1 + 172585720 A
i rheMac8.chr4             I 13 C 0
s macFas5.chr4             30517203 1 - 170955103 A
i macFas5.chr4             I 13 C 0
s macNem1.NW_012012100v1     814621 1 +   1495729 A
i macNem1.NW_012012100v1   I 13 C 0
s cerAty1.NW_012002513v1      37403 1 -    811324 A
i cerAty1.NW_012002513v1   I 13 C 0
s chlSab2.chr17            30073742 1 -  71996105 A
i chlSab2.chr17            I 13 C 0
s calJac3.chr4             30898080 1 + 171630274 T
i calJac3.chr4             C 0 I 315
s saiBol1.JH378327            67062 1 -    750284 t
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1316056 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           679585 1 +  18854210 T
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e colAng1.NW_012115577v1     731849 1149 -   1829203 M
e manLeu1.NW_012106264v1      67569 158 +    779361 I

a score=833087.000000
s hg38.chr6_GL000254v2_alt  1873097 115 +   4827813 GTGTGAACATTTCCA-TGTTGGTCCATTTTTTATGTGCCTAAATGGACAAAGTCACCCAGGACCTGGCTGCTGGACTCATCCTTAGGAAGAATAAAGAAAAAGGAAGTTTATCTCT
s panTro5.chr6             30718748 115 + 175400573 GTGTGAACATTTCCA-TGTTGGTCCATTTTTTATGTGCCTAAATGGACAAAGTCACCCAGGACCTGGCTGCTGGACTCATCCTTAGGAAGAATAAAGAAAAAGAAAATTGATCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31142385 115 + 173848474 GTGTGAACATTTCCA-TGTTGGTCCATTTTTTATGTGCCTAAATGGACAAAGTCACCCAGGACCTGGCTGCTGGACTCATCCTTAGGAAGAATAAAGAAAAAGAAAGTTGATCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     649332 115 +   2037526 GTGTGAACATTTCCA-TGTTGGTCCATTTTTTATGTGCCTAAATGGACAAAGTCACCCAGGACCTGGCTGCTGGACTCATCCTTAGGAAGAATAAAGAAAAAGAAAGTTTATCTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75317496 115 + 122973662 GTGTGAACATTTCCA-TGTTGGTCCATTTTTTATGTGCCTAAATGGACAAAGTCACCCAGGACCTGGCTGCTGGACTCATCCTTAGGAAGAATAAAGAAAAAGAAAGTTTATCTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31228190 114 + 172585720 GTGTTAACATTTCCA-TGTTGGTACATTTTTTATGTGCCT-AATGGACAAAGTCACCCAGGATCTGGCTGCTGGACTCATCCCTAGGAAGAATAAAGAAAAAGAAAGTTTATCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30517204 114 - 170955103 GTGTTAACATTTCCA-TGTTGGTACATTTTTTATGTGCCT-AATGGACAAAGTCACCCAGGATCTGGCTGCTGGACTCATCCTTAGGAAGAATAAAGAAAAAGAAAGTTTATCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     814622 114 +   1495729 GTGTTAACATTTCCA-TGTTGGTACATTTTTTATGTGCCT-AATGGACAAAGTCACCCAGGATCTGGCTGCTGGACTCATCCTTAGGAAGAATAAAGAAAAAGAAAGTTTATCTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      37404 112 -    811324 GTGTTAACATTTCCA-TGTTGGTACATTCTTTATGTGCCT-AATGGACAAAGTCA--CAGGATCTGGCTGCTGGACTCATCCTTAGGAAGAATAAAGAAAAAGAAAGTTTATCTCT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30073743 114 -  71996105 GTGTTAACATTTCCA-TGTTGGTACATTTTTTATGTGCCT-AATGGACAAAGTCACCCAGGATCTGGCTGCTGGACTCATCCTTAGGAAGAATAAAGAAAAAGAAAGTTTATCTCT
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30898396 115 + 171630274 GTGTGAACATTTCTA-TGTTGGTACATTTTTTATGTGCCTAAACGGACAAAGTCACCCAGGACCTGGCTGCTGGACTCATCCTTAGGAAGAATAGAGAAAAATAAAGTTTATCTTT
i calJac3.chr4             I 315 C 0
s saiBol1.JH378327            67063 115 -    750284 gtgtgaacatttCTA-TGTTGGTACATTGTTTATGTGCCTAAACAGACAAAGTCACCCAGGACCTGGCTGCTGGACTCATCCTTAGGAAGAATAGAGAAAAATAAAGTTTATCTTT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1316057 115 -   1771730 GTGTGAACATTTCTA-TGTTGGTACATTTTTTATGTGCCTAAATGGACAAAGTCACCCAGGACCTGGCTGCTGGACTCATCCTTAGGAAGGATAGAGAAAAATAAAGTTTATCTTT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           679586 105 +  18854210 GTGTGAACATTTCCATTATTTGTACATTTCTTATCTGCCTAAATAGATGAAG-----------CTGGCTGCTGGACTCAACCTTAGTAAGAGTAAAGAAAAAGGGAATCTagcttt
i otoGar3.GL873550         C 0 I 172
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e colAng1.NW_012115577v1     731849 1149 -   1829203 M
e manLeu1.NW_012106264v1      67569 158 +    779361 I

a score=432033.000000
s hg38.chr6_GL000254v2_alt  1873212 66 +   4827813 AGCATCTTTCTCTTGCCCTT-GTTTTCTTCCTGGCCACAGTCATGCCCTGGATTTCAGTGTCTCTAA
s panTro5.chr6             30718863 66 + 175400573 AGCATCTTTCTCTTGCCCTT-GTTTTCTTCCTGGCCACAGTCATGCCCTGGATTTCAGTGTCTCTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31142500 66 + 173848474 AGCATCTTTCTCTTGCCCTT-GTTTTCTTCCTGGCCACAGTCATGCCCTGGATTTCAGTGTCTCTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     649447 66 +   2037526 AGCATCTTTCTCTTGCCCTT-GTTTTCTTCCTGGCCACAGTCATGCCCTGGATTCCAGTGTCTCTAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75317611 66 + 122973662 AGCATCTTTCTCTTGCCCTT-GTTTTCTTCCTGGCCACAGTCATGCCCTGGATTCCAGTGTCTCTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31228304 66 + 172585720 AGCATCGTTCTCTTGCCCTT-GTTTTCTTCCTGGTCACAGTCATGCCCTGGATTCCAGTGTCTCTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30517318 66 - 170955103 AGCATCGTTCTCTTGCCCTT-GTTTTCTTCCTGGTCACAGTCATGCCCTGGATTCCAGTGTCTCTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     814736 66 +   1495729 AGCATCGTTCTCTTGCCCTT-GTTTTCTTCCTGGTCACAGTCATGCCCTGGATTCCAGTGTCTCTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      37516 66 -    811324 AGCATCGTTCTCTTGCCCTT-GTTTTCTTCCTGGTCACAGGCATGCCCTGGATTCCAGTGTCTCTGA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30073857 66 -  71996105 AGCATCGTTCTCTTGCCCTT-GTTTTCTTCCTGGTCACAGTCATGCCCTGGATTCCAGTGTCTCTGA
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             30898511 65 + 171630274 AGCATCTTGCTCTTGGTGTT-GTTTTT-TCCTCACCACAGTCACGTCCTGGAATCCAGTGTCTCTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            67178 62 -    750284 AGTGT----CTCTTGATCTT-GTTTTTCTCCTCACCACAGTCATGTCCTGGAATCCAGGGTCTCTGA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1316172 66 -   1771730 AGCATCTTGCTCTTGGTCTT-GTTTTTTTCCTCATCACAGACATGTCCTGGAATCCAGTGTCTCTGA
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           679863 67 +  18854210 AGCATTTTTCTTGTGCTCTTGGTCCCCCCCCCCCCCGCAGTCATACCCAGGAATCCAGTGTCTCTGA
i otoGar3.GL873550         I 172 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e colAng1.NW_012115577v1     731849 1149 -   1829203 M
e manLeu1.NW_012106264v1      67569 158 +    779361 I

a score=1058672.000000
s hg38.chr6_GL000254v2_alt  1873278 128 +   4827813 ACATCTAGCAGCCTCTCACCCAGCATAACCCCTGTTGAGGTCCAGGGCACGATGGTGGGAGTGGGTGCAGAAGAGACAGAGAGACCACTGGTTTGAGTGTCTAGGGTTTGGGTCCTCAGGAAGAAC---TT
s panTro5.chr6             30718929 128 + 175400573 ACATCTAGCAGCCTCTCACCCAGCATAACCCCTGTTGAGGTCCAGGGCACGATGGTGGGAGTGGGTGCAGAAGAGACAGACAGACCACTGGTTTGAGTGTCTAGGGTTTGGGTCCTCAGGAAGAAC---TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31142566 128 + 173848474 ACATCTAGCAGCCTCTCACCCAGCATAACCCCTGTTGAGGTCCAGGGCACGATGGTGGGAGTGGGTGCAGAAGAGACAGAGAGACCACTGGTTTGAGTGTCTAGGGTTTGGGTCCTCAGGAAGAAC---TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     649513 128 +   2037526 ACATCTAGCAGCCTCTCACCCAGCATAACCCCTGTTGAGGTCCAGGGCATGATGGTGGGAGTGGGTGCAGAAGAGACAGAGAGACCACTGGTTTGAGTGTCTAGGGTTTGGGTCCTCAGGAAGAAC---TT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75317677 131 + 122973662 ACATCTAGCAGCCTCTCACCCAGCATAACCCCTGTTGGGGTCCAGGGCACGATGGTGGGAGTGGGTGCAGAAGAGACAGAGAGACCGCTGGTTTGAGTGTCTAGGGTTTGGGTCCTCAGGAAGAACTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31228370 131 + 172585720 ACATCTAGCAGCCTCTCACCCAGCATAACCCCTGTTGAGGTCCAGGGCACTATGGTGGGAGTGGGTACAGAAGACACAGACAGACCTCTGGTTTGAGTGTTTAGAGTTTGGGTCCTCAGGAAGAACTTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30517384 131 - 170955103 ACATCTAGCAGCCTCTCACCCAGCATAACCCCTGTTGAGGTCCAGGGCACTATGGTGGGAGTGGGTACAGAAGACACAGACAGACCTCTGGTTTGAGTGTTTAGAGTTTGGGTCCTCAGGAAGAACTTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     814802 131 +   1495729 ACATCTAGCAGCCTCTCACCCAGCATAACCCCTGTTGAGGTCCAGGGCACTATGGTGGGAGTGGGTACAGAAGACACAGACAGACCTCTGGTTTGAGTGTTTAGAGTTTGGGTCCTCAGGAAGAACTTCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      37582 131 -    811324 ACATCTAGCAGCCTCTCACCCAGCATAACCCCTGTTGAGGTCCAGGGCACTATGGTGGGAGTGGGTACAGAAGACACAGACAGACCTCTGGTTTGAGTGTTTAGAGTTTGGGTCCTCAGGAAGAACTTCTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30073923 131 -  71996105 ACATCTAGCAGCCTCTCACCCAGCATAACCCCTGTTGAGGTCCAGGGTACTATGGTGGGAGCGGGTACAGAAGAGACAGACAGACCTCTGGTTTGAGTGTTTAGAGTTTGGGTCCTCAGGAAGAACTTCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      67727 131 +    779361 ACATCTAGCAGCCTCTCACCCAGCATAACCCCTGTTGAGGTCCAGGGCACTATGGTGGGAGTGGGTACAGAAGAGACAGACAGACCTCTGGTTTGAGTGTTTAGAGTTTGGGTCCTCAGGAAGAACTTCTT
i manLeu1.NW_012106264v1   I 158 C 0
s calJac3.chr4             30898576 127 + 171630274 ACGTCTAGCGGCCTCTCACCCAGCATAACCCCTGATGAGGTCCAAGGTACGATGGTAGGAGTGGTTGCAGACG----AGATAGACCTGTAGTTTGAGTGTCTAGGGTTTGAGTCCTCAAGAAGAACTTCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            67240 127 -    750284 ACATCCAGCAGCCTCTCACCCAGCATAACCCCTGTTGAGGTCCAGGGTACAATGGTGGGAGTGGGTGGAGAAG----AGATAGACCTCTGGTTTGAGTGTCTAGGGTTTGAGTTCTCAAGAAGAACTTCTT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1316238 127 -   1771730 ACATCTAGCAGCCTCTCACCAAGCATAAACCCTGTTGAGGTCCAGGGTACGATGGTGGGAGTGGGTGGAGGAG----AGAGAGACCTCTGGTTTGAGTGTCTAGGGTTTCAGTCCTCAAAAAGAACTTCTT
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           679930 126 +  18854210 ACATTTATCAGCCTCCCACCCAGCATAACCACTGCTGAGGTCCAGGG--CCATGGTGGGAGTGAGTGGAGAAGAGATAGGGAGACCTTTGGTTTGTGCGTCCAGTGTCTGGGTCCTCAGGAAGGCttt---
i otoGar3.GL873550         C 0 I 239
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e colAng1.NW_012115577v1     731849 1149 -   1829203 M

a score=953788.000000
s hg38.chr6_GL000254v2_alt  1873406 133 +   4827813 ggcccggcgcgg----------------------------------------------------tggctcacgcccgtaatccaaacacttcggagaccgaggcggttggatcacctgaggtcaggagtttgaga------------ccag-cctggccaacatggtgaaacaacgtctctactaaaaatacaaaaaa
s panTro5.chr6             30719057 133 + 175400573 ggcccggcgcgg----------------------------------------------------tggctcacgcccgtaatccaagcacttcggagaccaaggcggttggatcacctgaggtcaggagtttgaga------------ccag-cctggccaacatggtgaaacaacgtctctactaaaaatacaaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31142694 133 + 173848474 ggcccagcgcgg----------------------------------------------------tggctcacgcccgtaatccaagcacttcggagaccgaggcggttggatcacctgaggtcaggagtttgaga------------ccag-cctggccaacatggtgaaacaacgtctctactaaaaatacaaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     649641 133 +   2037526 ggcccggtgcgg----------------------------------------------------tggctcacgcccgtaatccaagcacttgggagaccgaggcggttggatcacctgaggtcaggagtttgaga------------ccag-cctggccaacatggtgaaacaacgtctctactaaaaatacaaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75317808 133 + 122973662 ggcccggcgcgg----------------------------------------------------tggctcatgcctgtaatccaagctcttgggagaccgaggtgggtggattacctgaggtcaggagtttgaga------------caag-cctggccaacatggtgaaacaacgtctctactaaaaatacaaaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31228501 132 + 172585720 ggcccagcgcgg----------------------------------------------------tggctcatgcctataatccaaacacttgggaggccgaggcaggtagatcacctgaggtcaggagtttgaga------------ccag-cctggccaacatggtgaaa-aacgtctctactaaaaatacaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30517515 132 - 170955103 ggcccagcgcgg----------------------------------------------------tggctcatgcctataatccaaacacttgggaggccgaggcaggtagatcacctgaggtcaggagtttgaga------------ccag-cctggccaacatggtgaaa-aacgtctctactaaaaatacaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     814933 132 +   1495729 ggcccagcgcgg----------------------------------------------------tggctcatgcctataatccaaacacttgggaggccgaggcaggtagatcacctgaggtcaggagtttgaga------------ccag-cctggccaacatggtgaaa-aacgtctctactaaaaatacaaaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      37713 132 -    811324 ggccaagcgcgg----------------------------------------------------tggctcatgcctataatccaaacacttgggaggccgaagcaggtagatcacctgaggtcaggagtttgaga------------ccag-cctggccaacatggtgaaa-aacgtgtctactaaaaatacaaaaaa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30074054 132 -  71996105 ggcccagcgcgg----------------------------------------------------tggctcatgcctataatccaaacacttgggaggccgaggcaggtagatcacctgaggtcaggagtttgaga------------ccag-cctggccaacatggtgaaa-aacgtctctactaaaaatacaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      67858 132 +    779361 ggcccagtgcgg----------------------------------------------------tggctcatgcctataatccaaacacttgggaggccgaggcaggtagatcacctgaggtcaggagtttgaga------------ccag-cctggccaacatggtgaaa-aacgtctctactaaaaatacaaaaaa
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30898703 132 + 171630274 ggccgggcgcag----------------------------------------------------tggctcacacctgtaatcccagcccttgggaggccaaagtgggtgaaccacctgaggtcaggagttccaga------------ccag-cctggccaacgtggtg-aaccccatctctactaaaaatataaaaag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            67367 185 -    750284 ggccgggcgcggtggctcacgcctgtaatcccagcccttgggaggccaaagtgggtggatcacctggctcacgcctgtaatcccagcccttgggaggccaaagtgggtggatcacctgaggtcaggagttccaga------------ccag-gctggccaacacggtgaaaacccatctctactgaaaatataaaaaa
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1316365 134 -   1771730 ggccgggtgcag----------------------------------------------------tggctcacacctgtaatcccagcccttgggaggccaaagtgggtggatcacctgaggtcaggagttccaga------------ccagccctgaccaacatggtgaaaccccatctctactaaaaatataaaaaa
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550         18171121 129 -  18854210 GCATCTGCgtgg----------------------------------------------------t---------------ctcaggtactt-ggaggctgaggtgggaggattgcttgaacccagaagctggaggctgtactccagcccag-cctgggtaacatattgagaccctgacttaaataaacaaacaaaaaa
i otoGar3.GL873550         n 239 T 41446
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e colAng1.NW_012115577v1     731849 1149 -   1829203 M

a score=333168.000000
s hg38.chr6_GL000254v2_alt  1873539 42 +   4827813 ttagccaggcgtggtggcaggcacctgtaatcccagctactc
s panTro5.chr6             30719190 42 + 175400573 ttagccgggcgtggtggcaggcacctgtaatcccagctactc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31142827 42 + 173848474 ttagccgggcgtggtggcaggcacctgtaatcccagctactc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     649774 41 +   2037526 ttagccgggcgtggc-gcaggcacctgtaatcccagctactc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75317941 42 + 122973662 ttagctgggcgtggtggcaggcacctgtaatcccagctactc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31228633 42 + 172585720 ttagccaggcgtggtggtgggcacctgtaatcccagctactc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30517647 42 - 170955103 ttagccaggcgtggtggtgggcacctgtaatcccagctactc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     815065 42 +   1495729 ttagccaggcgtggtggtgggcacctgtaatcccagctactc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      37845 42 -    811324 ttagccaggcgtggtggtgggcacctgtaatcccagctactc
i cerAty1.NW_012002513v1   C 0 M 210
s chlSab2.chr17            30074186 42 -  71996105 ttagccaggcatggtggtgggcacctgtaatcccagctactc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      67990 42 +    779361 ttagccaggcgtggtggtgggcacctgtaatcccagctactc
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30898835 42 + 171630274 ttagctgggtgtggtggcaggcacctgtaatcccagctactc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            67552 42 -    750284 ttagctgggcgtggtggcaggcacctgtaatcccagctactc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1316499 42 -   1771730 ttagctgggcgtggtggcaggcacctgtaatcccagctactc
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550         18171250 41446 -  18854210 T
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e colAng1.NW_012115577v1     731849 1149 -   1829203 M

a score=32806.000000
s hg38.chr6_GL000254v2_alt  1873581 5 +   4827813 aggag
s panTro5.chr6             30719232 5 + 175400573 aggag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31142869 5 + 173848474 aggag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     649815 5 +   2037526 aggag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75317983 5 + 122973662 aggag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31228675 5 + 172585720 gggag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30517689 5 - 170955103 gggag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     815107 5 +   1495729 gggag
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30074228 5 -  71996105 gggag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      68032 5 +    779361 gggag
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30898877 5 + 171630274 aggag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            67594 5 -    750284 aggag
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1316541 5 -   1771730 aggag
i cebCap1.NW_016107755v1   C 0 M 200
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550         18171250 41446 -  18854210 T
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e colAng1.NW_012115577v1     731849 1149 -   1829203 M
e cerAty1.NW_012002513v1      37887 210 -    811324 M

a score=283029.000000
s hg38.chr6_GL000254v2_alt  1873586 60 +   4827813 cttgaggcaggagaatcacctgaactcgggccgcggaggttgcagtgagccgagattgcg
s panTro5.chr6             30719237 60 + 175400573 cttgaggcaggagaatcacctgaactcgggccgcggaggttgcagtgagccgagattgcg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31142874 60 + 173848474 cttgaggcaggagaatcacctgaactcgggccgcggaggttgcagtgagccgagattgcg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     649820 60 +   2037526 cttgaggcaggagaatcacctgaactcgggccgcggaggttgcagtgagccgagattgcg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75317988 60 + 122973662 cctgaggcaggagaatcacttgaacccaggccgcggaggttgcagtgagctgaaattgtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31228680 60 + 172585720 cctgaggcaggagaattgcttgaacctgtgctgcagaggttgcagtgagccaagatcaca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30517694 60 - 170955103 cctgaggcaggagaattgcttgaacctgtgctgcagaggttgcagtgagccaagatcaca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     815112 60 +   1495729 cctgaggcaggaggattgcttgaacctgtgctgcagaggttgcagtgagccaagatcaca
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30074233 60 -  71996105 cctgaggcaggagaattgcttgaatccgtgctgcagaggttgcagtgagccaggatcaca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      68037 60 +    779361 cctgaggcaggagaattgcttgaatccgtgctgcagaggttgcagtgagccaggatcaca
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30898882 60 + 171630274 gccaaggcaggagaattgcttgagctcgggtggcagaggttacagtaagtcaatgtcaca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            67599 60 -    750284 gccaaggcaggagaattgcttgagcccgggtggcagaggttgcagtgaaccgagatcaca
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550         18171250 41446 -  18854210 T
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1316546 200 -   1771730 M
e colAng1.NW_012115577v1     731849 1149 -   1829203 M
e cerAty1.NW_012002513v1      37887 210 -    811324 M

a score=26226.000000
s hg38.chr6_GL000254v2_alt  1873646 4 +   4827813 ccag
s panTro5.chr6             30719297 4 + 175400573 ccag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31142934 4 + 173848474 ccag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     649880 4 +   2037526 ccag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75318048 4 + 122973662 ccag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31228740 4 + 172585720 ccag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30517754 4 - 170955103 ccag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     815172 4 +   1495729 ccag
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30074293 4 -  71996105 ccag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      68097 4 +    779361 ccag
i manLeu1.NW_012106264v1   C 0 C 0
s calJac3.chr4             30898942 4 + 171630274 ccag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            67659 4 -    750284 gtag
i saiBol1.JH378327         C 0 C 0
s otoGar3.GL873550           680295 4 +  18854210 ccag
i otoGar3.GL873550         I 239 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1316546 200 -   1771730 M
e colAng1.NW_012115577v1     731849 1149 -   1829203 M
e cerAty1.NW_012002513v1      37887 210 -    811324 M

a score=618399.000000
s hg38.chr6_GL000254v2_alt  1873650 102 +   4827813 tgcactccacc--ctgggcaacaagagtgaaactccgtctcaaaaa------------aagaaaaaaaaagaagaagaa----------------------------------CTTCTTGACTTGACTCAGCAGGACTTTTTCCATGGGT
s panTro5.chr6             30719301 101 + 175400573 tgcactccagc--ctgggcaacaagagtgaaactccgtctcaaaaa------------aagaaaaaaaa-gaagaagaa----------------------------------CTTCTTGACTTGACTCAGCAGGACTTTTTCCATGGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31142938 100 + 173848474 tgcactccagc--ctgggcaacaagagtgaaactccgtctcaaaaa------------agaaaaaaaaa--aagaagaa----------------------------------CTTCTTGACTTGACTCAGCAGGACTTTTTCCATGGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     649884 100 +   2037526 tgcactccagc--ctgggcaacaagagtgaaactccgtctcaaaaa------------aagaaaaaaaa-gaagaagaa----------------------------------CTTCTTGACTTGACTCAGCAGGAC-TTTTCCATGGGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75318052 101 + 122973662 tgcactccagc--ctgggcaacaagagtgaaactccgtctcaaaaa------------aagaaaaaaaa-gaagaagaa----------------------------------CTTCTTGACTTGACTCAGCAGGACTTTTTCCATGGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31228744 101 + 172585720 tgcactccagc--ctgggcaacaagagtgaaactccatctcaaaaa------------aagaaaaaaaa-gaagaagaa----------------------------------CTTCTTGACTTGACCCAGCAGGGCTTTTTCCATGGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30517758 101 - 170955103 tgcactccagc--ctgggcaacaagagtgaaactccatctcaaaaa------------aagaaaaaaaa-gaagaagaa----------------------------------CTTCTTGACTTGACCCAGCAGGGCTTTTTCCATGGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     815176 101 +   1495729 tgcactccagc--ctgggcaacaagagtgaaactccatctcaaaaa------------aagaaaaaaaa-gaagaagaa----------------------------------CTTCTTGACTTGACCCAGCAGGGCTTTTTCCATGGGT
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30074297 101 -  71996105 tgcactccagc--ctgggcaacaagagtgaaactccatctcaaaaa------------aagaaaaaaaa-gaagaagaa----------------------------------CTTCTTGACTTGACCCAGCAGGGCTTTTTCCATGGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      68101 101 +    779361 tgcactccagc--ctgggcagcaagagtgaaactccatctcaaaaa------------aagaaaaaaaa-gaagaagaa----------------------------------CTTCTTGACTTGACCCAGCAGGGCTTTTTCCATGGGT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     733013 101 -   1829203 tgcactccagc--ctgggcaacaagagtgaaactccatctcaaaaa------------aagaaaaaaaa-gaaGAAGAA----------------------------------CTTCTTGACTTGACCCAGCAGGGCTTTTTACATGGGT
i colAng1.NW_012115577v1   M 1149 C 0
s calJac3.chr4             30898946 101 + 171630274 tacactccagc--ctgagtcaagagagtgaaactcattaaaaaaaa------------aaaaGCGGGGT-GAAGAAGAA----------------------------------CTTCTTGACTTGACACAGCAGGGCTTTTTCCATGGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            67663 147 -    750284 tacactccagc--ctgggtcacgagagcgaaactcattaaaaaaaaGGgggggaggggaggggagggga-ggaggggaacgggggtggggagggggaggcggaggCGCAGGCGCTTCTTGACTTCACCCAGCAGGGCTTTTTCCCTGGGT
i saiBol1.JH378327         C 0 C 0
s otoGar3.GL873550           680299  77 +  18854210 --caccctacccactgagctac--gggtgccACCC-----------------------------------ATGGAAGGA----------------------------------CTTTTTGACTTGACCCAGCCAGGCCTCCTCCACAGAT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1316546 200 -   1771730 M
e cerAty1.NW_012002513v1      37887 210 -    811324 M

a score=308131.000000
s hg38.chr6_GL000254v2_alt  1873752 37 +   4827813 CTAAAGCTAGGTGTGAAGAGAGTGAGCTCGTGGTGAG
s panTro5.chr6             30719402 37 + 175400573 CTAGAGCTAGGTGTGAAGAGAGTGAGTTCATGGTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31143038 37 + 173848474 CTAGAGCTAGGTGTGAAGAGAGTGAGTTCATGGTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     649984 37 +   2037526 CTAGAGCTAGGTGTGAAGAGAGTGAGTTCGTGGTGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75318153 37 + 122973662 CTAGAGCTATGTGTGAAGAGAGCGAGTTCGTGGTGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31228845 37 + 172585720 CTAGAGCTAGGTGTGAAGAGAGCGAGTTCACGGTGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30517859 37 - 170955103 CTAGAGCTAGGTGTGAAGAGAGCGAGTTCACGGTGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     815277 37 +   1495729 CTAGAGCTAGGTGTGAAGAGAGCGAGTTCACAGTGAG
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30074398 37 -  71996105 CTAGAGCTAGGTGTGAAGAGAGCGAGTTCATGGTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      68202 37 +    779361 CTAGAGCTAGGTGTGAAGAGAGCGAGTTCATGGTGAG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     733114 37 -   1829203 CTAGAGCCAGGTGTGAAGAGAGCGAGTTCATGGTGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30899047 37 + 171630274 CTAGAGCTAGGTGTGAAGAGAGCGAGTTCTTGGTgag
i calJac3.chr4             C 0 I 129
s saiBol1.JH378327            67810 37 -    750284 CTAGAGCTAGGTGTGAAGAAAGCGAGTTCTTGGTGAG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1316748 37 -   1771730 CTAGAGCTAGGTGTGAAGAAAACGAGTTCTTAGTGAG
i cebCap1.NW_016107755v1   M 200 C 0
s otoGar3.GL873550           680376 35 +  18854210 CTAGAGCTACATGT--AGGGAATCAGCTCATGGGGAG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cerAty1.NW_012002513v1      37887 210 -    811324 M

a score=414563.000000
s hg38.chr6_GL000254v2_alt  1873789 50 +   4827813 AGGAACTTGTTCATC--AAAAGGAGTCCATGCCCAGTGGCAGAAGTGGAGAG
s panTro5.chr6             30719439 50 + 175400573 AGGAACTTGTTCATC--AAAAGGAGTCTATGCCCAGTGGCAGAAGTGGAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31143075 50 + 173848474 AGGAACTTGTTCATC--AAAAGGAGTCCATGCCCAGTGGCAGAAGTGGAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     650021 49 +   2037526 AGGAACTTGTTCATC--AAAAGGAGTCCATGCCCAGTGGCAGAAGTGGAGA-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75318190 50 + 122973662 AGGAACTTGTTCATC--AAAAGGAGTCCATGCCCAGCGGCAGAAGTGGAGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31228882 50 + 172585720 AGGAACTTATTCATC--AAGAGGAGTCCGTGCCCAGTGGCAGAAGTGGAGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30517896 50 - 170955103 AGGAACTTATTCATC--AAGAGGAGTCCGTGCCCAGTGGCAGAAGTGGAGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     815314 50 +   1495729 AGGAACTTATTCATC--AAGAGGAGTCCGTGCCCAGTGGCAGAAGTGGAGAG
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30074435 50 -  71996105 ACGAACTTATTCATC--AAGAGGAGTCCGTGCCCAGTGGCAGAAGTGGAGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      68239 50 +    779361 AGGAACTTATTCATC--AAGAGGAGTCCGTGCCCAGTGGCAGAAGTGGAGAG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     733151 50 -   1829203 AGGAACTTGTTCATC--AAGAGGAGTCCGTGCCCAGTGGCAGAAGTGGAGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30899213 50 + 171630274 AGGAACTTGTTGGTG--GAGAGGAGTCCACGCCCAGTGGCAGAAGTGGAGAG
i calJac3.chr4             I 129 C 0
s saiBol1.JH378327            67847 50 -    750284 AGGAACTTGTTCATG--GAGAGGAGTCCACGCCCAGTGGCAGAAGTGGAGAG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1316785 50 -   1771730 AGGAACTTGTTCATG--GAGAGGAGTCCACGCCCAGTGGCAGAAGTGGAGCG
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           680411 52 +  18854210 AGGAGCTTGTTCATCTAAGGAGAATTCCATGTCCAGGGACAAAAGAGGGGAG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cerAty1.NW_012002513v1      37887 210 -    811324 M

a score=167401.000000
s hg38.chr6_GL000254v2_alt  1873839 18 +   4827813 GTGGGTATGGGACACACA
s panTro5.chr6             30719489 18 + 175400573 GTGGGTATGGGACACACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31143125 18 + 173848474 GTGGGTATGGGACACACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     650070 18 +   2037526 GTGGGTATGGGACACACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75318240 18 + 122973662 GTGGGTATGGGACACACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31228932 18 + 172585720 GTGGGTATGGGACACTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30517946 18 - 170955103 GTGGGTATGGGACACTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     815364 18 +   1495729 GTGGGTATGGGACACTCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      38099 18 -    811324 GTGGGTATGGGACACTCA
i cerAty1.NW_012002513v1   M 210 C 0
s chlSab2.chr17            30074485 18 -  71996105 GTGGGTATGGGAGACTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      68289 18 +    779361 GTGGGTATGGGACACTCA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     733201 18 -   1829203 GTGGGTATGGGACACGCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30899263 18 + 171630274 GTGGGTATGGGACACTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            67897 18 -    750284 GTGGGTATGGGACACTCA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1316835 18 -   1771730 GTGGGTATcagctattca
i cebCap1.NW_016107755v1   C 0 I 83
s otoGar3.GL873550           680463 18 +  18854210 GTGAACGTGAGGCACTCA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I

a score=746187.000000
s hg38.chr6_GL000254v2_alt  1873857 84 +   4827813 GGGAAGCTGCTCTCTTCTGTTGTCTGTGGCTTCTGTTGGAGGATGTGCTGTGGGAATGCAAGGAGGAGATGGAAGGAAGGTGTC
s panTro5.chr6             30719507 84 + 175400573 GGGAAGCTGCTCTCTTCTGTTGTCTGTGGCTTCTGTTGGAGGATGTGCTGTGGGAATGCAAGGAGGAGATGGAAGGAAGGTGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31143143 84 + 173848474 GGGAAGCTGCTCTCTTCTGTTGTCTGTGGCTTCTGTTGGAGGATGTGCTGTGGGAATGCAAGGAGGAGATGGAAGGAAGGTGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     650088 84 +   2037526 GGGAAGCTGCTCTCTTCTGTTGTCTGTGGCTTCTGTTGGAGGATGTGCTGTGGGAATGCAAGGAGGAGATGGAAGGAAGGTGTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75318258 84 + 122973662 GGGAAGCTGCTCTCTTCTGTTGTCTGTGGCTTCTGTTGGAGGATGTGCTGTGGGAATGCAAGGAGGAGATGGAAAGAAGGTGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31228950 84 + 172585720 GGGAAGCTGCTCTCTTCTGTTGTCTGTGCCTTCTGTTGGAGGATGTGCTGTGGGAATGCAAGGAGGAGATGGAAAGAATGTGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30517964 84 - 170955103 GGGAAGCTGCTCTCTTCTGTTGTCTGTGCCTTCTGTTGGAGGATGTGCTGTGGGAATGCAAGGAGGAGATGGAAAGAATGTGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     815382 84 +   1495729 GGGAAGCTGCTCTCTTCTGTTGTCTGTGCCTTCTGTTGGAGGATGTGCTGTGGGAATGCAAGGAGGAGATGGAAACAATGTGTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      38117 84 -    811324 GGGAAGCTGCTCTCTTCTGTTGTCTGTGCCTTCTGTTGGAGGATGTGCTGTGGGAATGCAAGGAGGAGATGGAAAGAATGTGTC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30074503 84 -  71996105 GGGAAGCTGCTCTCTTCTGTTGTCTGTGCCTTCTGTTGGAGGATGTGCTGTGGGAATGCAAGGAGGAGATGGAAAGAATGTGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      68307 84 +    779361 GGGAAGCTGCGCTCTTCTGTTGTCTGTGCCTTCTGTTGGAGGATGTGCTGTGGGAATGCAAGGAGGAGATGGAAAGAATGTGTC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     733219 84 -   1829203 GGGAAGCTGCTCTCTTCTGTTGTCTGTGCCTTCTGTTGGAGGATGTGCTGTGGGAATGCAAGGAGGAGACGGAAAGAATGTGTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30899281 81 + 171630274 GGGAAGCTGCTCTTTT---TTGTCAGTGGCTCCTGTTGGAGGATGTGCTGTGGGAATGCAAGGAGGAGATGGAAAGAAGGTGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            67915 84 -    750284 GGGAAGCTGCTCTCTTCTGTTGTCAGTGGCTCCCGATGGAGGATGTGCTGTGGGAATGCAAGGAGGAGATGGAAAGAAGGTGTC
i saiBol1.JH378327         C 0 C 0
s otoGar3.GL873550           680481 84 +  18854210 GAGAAGCTGCTTTCTGCTATTGTCAGTGGCTTGTGTTGGAGGCTGTATTGTGGGAATGAAGGGAGGGAATGGAAAGACAATGTC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1316853 83 -   1771730 I

a score=88314.000000
s hg38.chr6_GL000254v2_alt  1873941 10 +   4827813 AATATAGC-TT
s panTro5.chr6             30719591 10 + 175400573 AATATAGC-TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31143227 10 + 173848474 AATATAGC-TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     650172 10 +   2037526 AAAATAGC-TT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75318342 10 + 122973662 AAAATAGC-TT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31229034 10 + 172585720 AAAATAGC-TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30518048 10 - 170955103 AAAATAGC-TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     815466 10 +   1495729 AAAATAGC-TT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      38201 10 -    811324 AAAATAGC-TT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30074587 10 -  71996105 AAAATAAC-TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      68391 10 +    779361 AAAATAGC-TT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     733303 10 -   1829203 AAAATAGC-TT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30899362 10 + 171630274 AAAATAGC-TT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            67999 11 -    750284 AAAATAGCTTT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1316936 10 -   1771730 aaaaaagc-tt
i cebCap1.NW_016107755v1   I 83 C 0
s otoGar3.GL873550           680565 10 +  18854210 CAAATAGC-TT
i otoGar3.GL873550         C 0 I 228
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I

a score=1548891.000000
s hg38.chr6_GL000254v2_alt  1873951 188 +   4827813 TAACAAAGG--AAAAAAAAATGAAAACACCgaaaccacccttgcaaaaattgtaacagtgagaaaattatgacattgaaagatatccaatctaacccaactccttcttgcctttaacctccaaattgcacttagtcattcctgagcaaaggccaagctaactttgggagaaatttcgtt----tacagtttaaa
s panTro5.chr6             30719601 188 + 175400573 TAACAAAGG--AAAAAAAAATGAAAACACCAaaaccacccttgcaaaaattgtaacagtgagaaaataatgacattgaaagatatccaatctaacccaactccttcttgcctttagcctccaaattgcacttagtcattcctgagcaaaggccaagctaactttgggagaaatttcgtt----tacagtttaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31143237 187 + 173848474 TAACAAAGG---AAAAAAAATGAAAACACCgaaaccacccttgcaaaaattgtaacagtgagaaaataatgacattgaaagatatccaatctaacccaactccttcttgcctttagcctccaaattgcacttagtcattcctgagcaaaggccaagctaactttgggagaaatttcgtt----tacagtttaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     650182 187 +   2037526 TAACAAAGG---AAAAAAAATGAAAACACCgaaaccacccttgcaaaaattgtaacagtgagaaaattatgacattgaaagatatccagtctaacccaactccttcttgcctttaacctccaaattgcacttagtcattcctgagcaaaggccaagctaactttgggagaaatttcgtt----tacagtttaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75318352 187 + 122973662 TAACAAAGG--AAAAAAAAATGAAAACACCgaaaccacccctgcaaaaattgtaacagtgagaaaattatgacattgaaagatatccaatctaa-ccaactccttcttgcctttaacctccaaattgcacttagtcattcctgggcaaaggccaagctaactctgggagaaatttcgtt----tacagtttaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31229044 187 + 172585720 TAACAAAGG--AAAAAAAAATGAAAACACCgaaaccacccttgcaaaaactgtaacagtgagaaaattatgacattgaaagatatccaatctaa-ccaactccttctggtctttaacctccaaattgctcttggtcattcctgggcaaaggtcaagctaactttgggagaaatttcatt----cacagtttaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30518058 187 - 170955103 TAACAAAGG--AAAAAAAAATGAAAACACCgaaaccacccttgcaaaaactgtaacagtgagaaaattatgacattgaaagatatccaatctaa-ccaactccttctggtctttaacctccaaattgctcttggtcattcctgggcaaaggtcaagctaactttgggagaaatttcatt----cacagtttaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     815476 187 +   1495729 TAACAAAGG--AAAAAAAAATGAAAACACCgaaaccacccttgcaaaaactgtaacagtgagaaaattatgacattgaaagatatccaatctaa-ccaactccttctggtctttaacctccaaattgctcttggtcattcctgggcaaaggtcaagctaactttgggagaaatttcatt----cacagtttaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      38211 191 -    811324 TAACAAAGG--AAAAAAAAATGAAAACACCgaaaccacccttgcaaaaactgtaacagtgagaaaattatgacattgaaagatatccaatctaa-ccaactccttcttgtctttaacctccaaattgcacttggtcattcctgggcaaaggtcaagctaactttgggagaaatttctttctcccaaagtttaaa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30074597 184 -  71996105 TAACAAAGG--AAAAAAAAATGAAAACACCgaaaccacccttgcaaaaactgtaacagtgagaaaattatgacattgaaagatatccaatctaa-ccaactccttcttgtctttaacctccaaattgcac---gtcattcctgggcaaaggtcaagctaactttgggggaaatttcatt----cacagtttaaa
i chlSab2.chr17            C 0 I 2720
s manLeu1.NW_012106264v1      68401 187 +    779361 TAACAAAGG--AAAAAAAAATGAAAACACCgaaaccacccttgcaaaaactgtaacagtgagaaaattatgacattgaaagatatccaatctaa-ccaactccttcttgtctttaacctccaaattgcacttggtcattcctgggcaaaggtcaagctaactttgggagaaatttcatt----cacagtttaaa
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     733313 188 -   1829203 TAACACAGG-AAAAAAAAAATGAAAATACCgaaaccacccttgcaaaaactgtaacagtgagaaaattatgacattgaaagatatccaatctaa-ccaactccttcttgtctttaacctccaaattgcacttggtcattcctgggcaaaggtcaagctaactttgggagaaattacatt----cacagtttaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30899372 186 + 171630274 TAAAAAAGG--AAAACAAAATGAAAAGAGtgaaaccacccttgcaaaaattgtaacagtgagaaaattatgacagtgaaaaatatctaatctaa-ccatctcgttcttgcctttaacctccatgttgcacttggtcattcctgagaataggccaagct-actttgggagaaagttcatt----tactgtttaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            68010 186 -    750284 TAAAAAGGG--AAAAAAAATTGAAAAGAGtgaaaccacccttgcaaaaattgtaacagtgagaaaattatgacagtgaaaaatatctcatctaa-ccatctccttcttgcctttaacctccaaatggcacttggtgattcctgggaatagaccaagct-actttgggagtatgttcatt----taccgtttaaa
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1316946 188 -   1771730 taaaaaaggaaaaaaaaaaaaaaaaAGAGtgaaaccacccttgcaaatattgtaacagtgagaaaattatgacagtgaaaaatatctaatctaa-ccatctccttcttgcctttaacctccaaatggcacttggtgattcctgggaataggccaagct-actttgggagaaagttcatt----taccgtttaaa
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           680575 228 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I

a score=1394177.000000
s hg38.chr6_GL000254v2_alt  1874139 200 +   4827813 tgataatagcccttcccaaaactaacctgtctttgt-aaaaatgatgaaaggccaccaggttagggaggatgagaggggcctga-----------atgcaggcttagataaacaattacccgccattgtttcagaggtcacaagatttgtaactt-ccccaattagtcctgtaaaatgatatcactg---------------tggccttttgagatgtctttgcagTT
s panTro5.chr6             30719789 198 + 175400573 tgataatagcccttcccaaaactaacctgtct--gt-aaaaatgatgaaaggccaccaggttagggaggatgagaggggcctga-----------atgcaggcttagataaacaattacccgccattgtttcagaggtcacaagatttgtaactt-ccccaattagtcctgtaaaatgatatcactg---------------tggccttttgagatgtctttgcagTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31143424 198 + 173848474 tgataatagcccttcccaaaactaacctgtct--gt-aaaaatgatgaaaggccaccaggttagggaggatgagaggggcctga-----------atgccggcttagataaacaattacccgccattgtttcagaggtcacaagatttgtaactt-ccccaattagtcctgtaaaatgatatcactg---------------tggccttttgagatgtctttgcagTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     650369 200 +   2037526 tgataatagcccttccccaaactaacctgtctttgt-aaaaatgatgaaaagccaccaggttagggaggatgagaggggcctga-----------atgcaggcttagataaacaactacccgccactgtttcagaggtcacaagatttgtaactt-ccccaattagtcctgtaaaatgatatcactg---------------tggccttttgagatgtctttgcagTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75318539 197 + 122973662 tgataatagcccttccccaaactaaactgtctttgt-aaaaacgatgaaaggccaccaggttagggaggatgagaggggcctga-----------atgcaggct----taaacggttaccagccattgtttcagaggtcacaagatttgtaacttcccccaattaatcctgtaaaatgacatcactg---------------tggccttttgaggtatctttgcagTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31229231 200 + 172585720 cgataatagcccttcccaaaactaaactgtctttgt-aaaaatgatgaaaggccaccaggttagggcggatgagaggggtctga-----------atgcaggctcagttaaatgattatcagccattgtttcagaggtcacaagatttgtaactt-caccaattattcctgtaaaatgacatcacta---------------tggccttttgagatgtcttttcagtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30518245 200 - 170955103 cgataatagcccttcccaaaactaaactgtctttgt-aaaaatgatgaaaggccaccaggttagggcggatgagaggggtctga-----------atgcaggctcagttaaatgattatcagccattgtttcagaggtcacaagatttgtaactt-caccaattattcctgtaaaatgacatcacta---------------tggccttttgagatgtcttttcagtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     815663 200 +   1495729 cgataatagcccttcccaaaactaaactgtctttgt-aaaaatgatgaagggccaccaggttagggcggatgagaggggtctga-----------atgcaggctcagttaaatgattatcagccattgtttcagaggtcacaagatttgtaactt-caccaattattcctgtaaaatgacatcacta---------------tggccttttgagatgtcttttcagtt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      38402 200 -    811324 cgataatagcccttcccaaaactaaactgtctttgt-aaaaatgatgacaggccaccagggtagggtggatgagaggggtctga-----------atgcaggctcagttaaatgattatcagccattgtttcagaggtcacaagatttgtaactt-caccaattattcctgtaaaatgacatcacta---------------tggccttttgagatgtcttttcagtt
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1      68588 200 +    779361 cgataatagcccttcccaaaactaaactgtctttgt-aaaaatgatgaaaggccaccaggttagggaggatgagaggggtctga-----------atgcaggcttagttaaatgattatcagccattgtttcagaggtcacaagatttgtaactt-caccaattattcctgtaaaatgacatcacta---------------tggccttttgagatgtcttttcagtt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     733501 200 -   1829203 tgttaatagcccttcccaaaactaaactgtctttgt-aaaaatgatgaaaggccaccaggttagggaggatgagaggggtctga-----------atgcaggcttagttaaatgattatcagccattgtttcagaggtcacaagatttgtaactt-caccaattattcctgtaaaatgacatcacta---------------tggccttttgagatgtcttttcagtt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30899558 226 + 171630274 tgataatagcccttccgaaaactgaactgtctttgtaaaaaataatgaaaggccaccaggttagggaggatgagaggggtctgaattctgctaagatgcaggcgtaattaaacgatgaccagccattgttccagaagtcataagacttgtaactt-ccccaattattcctat-aaatgacatcactgctgtagttgaccttttggccttttgagatgtcttttcagtt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            68196 204 -    750284 ----------------------tgaactgtctttgtaaaaaataatgaaaggccaccaggttagggaggatgagaggggtctgaattctgctaagatgcaggcataattaaacgattaccagccattgttccagaggtcacaagacttgtaactt-ccccaattattcctat-aaataacatcactattgtagttgacctcttggccttttgagacgtcttttcagtt
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1317134 226 -   1771730 tgataatagcccttcccaaagctgaactgtctttgtaaaaaataatgaaaggccaccaggttagggaggatgagaggggtctgaattctgctaagatgcaggcataattaaacgattaccagccattgttccagaggtcacaagacttgtaactt-ccccaattattcctat-aaataacatcactattgtagttgaacttttggcctttcgagatgtcttttcagtt
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           680575 228 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=1370407.000000
s hg38.chr6_GL000254v2_alt  1874339 188 +   4827813 Attttttgttttgtttgcttt---gagacaaggtcttgctctgtcaccaaggctggagtgcagtgat----catagctcactgcagtctctatctcctgggctcaagtgaaccttccacctcagccttccaagtagctgggactgcaggtgcatgcc-accatg------cctggccag-ttttgttgttttttgGTTCTGG-G
s panTro5.chr6             30719987 188 + 175400573 Attttttgttttgtttgcttt---gagacaaggtcttgctctgtcaccaaggctggagtgcagtgat----catagctcactgcagtctctatctcctgggctcaagtgaaccttccacctcagccttccaagtagctgggactgcaggtgcatgcc-accatg------cctggccag-ttttgttgttttttgGTTCTGG-G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31143622 188 + 173848474 Attttttgttttgtttgcttt---gagacaaggtcttgctctgtcaccaaggctggagtgcagtgat----catagctcactgcagtctctatctcctgggctcaagtgaaccttccacctcagccttccaagtagctgggactgcaggtgcatgcc-accatg------cctggccag-ttttgttgttttttgGTTCTGG-G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     650569 188 +   2037526 Attttttgttttgtttgcttt---gagacaaggtcttgctctgtcaccaaggctggagtgcagtgat----catagctcactgcagtctctatctcctgggctcaagtgaaccttccacctcagccttccaagtagctgggactgcaggtgcgtgcc-accatg------cctggccag-ttttgttgttttttgGTTCTAG-G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75318736 164 + 122973662 ATTttttgttttgtttg---------------------------caccgaggctggagtgcagtgat----catagctcaccacagtctctgtctcccaggctcaagtgaaccttccacctcagccttccaagtagctgggactgcaggtgtgtgcc-accatg------cctggccag-ttttgttgttttttgGTTCTGG-G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31229431 184 + 172585720 gtt-----ttttgtttgcttt---gagacatggtcttgctctgtcacccaggctggagtgcagtgat----catagctcactgcagcctctatctcctgggctcaagtgaaccttccacctcggccttccaagtagctgggactgcaggtgcatgccaaccatg------cctggccag-ttttgttgttttttgGTTCTGG-G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30518445 184 - 170955103 gtt-----ttttgtttgcttt---gagacatggtcttgctctgtcacccaggctggagtgcagtgat----catagctcactgcagcctctatctcctgggctcaagtgaaccttccacctcggccttccaagtagctgggactgcaggtgcatgccaaccatg------cctggccag-ttttgttgttttttggttctgg-g
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     815863 184 +   1495729 gtt-----ttttgtttgcttt---gagacatggtcttgctctgtcacccaggctggagtgcagtgat----catagctcactgcagcctctatctcctgggctcaagtgaaccttccacctcggccttccaagtagctgggactgcaggtgcatgccaaccatg------cctggccag-ttttgttgttttttgGTTCTGG-G
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      38602 184 -    811324 gtt-----ttttgtttgcttt---gagacatggtcttgctctgtcacccaggctggagtgcagtgat----catagctcactgcagcctttatctcctgggctcaagtgaaccttccacctcggccttccaagtagctgggactgcaggtgcatgccaaccatg------cctggccag-ttttgttgttttttgGTTCTGG-G
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1      68788 184 +    779361 gtt-----ttttgtttgcttt---gagacatggtcttgctctgtcacccaggctggagtgcagtgat----catagctcactgcagcctttatctcctgggctcaagtgaaccttccacctcggccttccaagtagctgggactgcaggtgcatgccaaccatg------cctggccag-ttttgttgttttttgGTTCTGG-G
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     733701 184 -   1829203 gtt-----tttggtttgcttt---gagacatggtcttactctgtcccccaggctggagtgcagtgat----catagctcactgcagcctctatctcctgggctcaagtgaaccttctacctcggccttccaagtagctgggactgcaggtgcgtgccaaccatg------cctggccag-ttttgttgttttttgGTTCTGG-G
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30899784 181 + 171630274 ttg-----ttttgtttacttt---gaga-gaggttttgctctatcacccaggctggagtgcagtggt----catagctcactgcagcctctatctcccaggctcaagtgattcttccacgtcagccttgcaagtagctgggactgcaggtgcatgcc-accatg------actggtcaa-ttttgttggcttttaatttttg--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            68400 180 -    750284 ttg-----ttttgtttacttt---gagatgaggttttgctctgtcacccaggctggagtgcagtggt----catagctcactgca--ctctatctcccaggctcaagtgatacttccacttcagccttgcaagtagctgggactgcaggtgcatgcc-accatg------actggccaa-tttcattggcttttaatttttg--
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1317360 183 -   1771730 ttg-----ttttgtttacttt---gagacgaagtttttctctgtcacccaggctggagtgcagtggt----cacagctcactgcagcctctatctcccaggctcaagtgattcttccacttcagccttgcaagtagctggggctgcaggtgcatgcc-accatg------actggccaa-ttttgttggcttttaatttttgg-
i cebCap1.NW_016107755v1   C 0 I 14
s otoGar3.GL873550           680803 197 +  18854210 Att-----tttttttttttttgtagagacagagtctcactttatcgtccttggtagagtgctgtggcgtcacacagctcatagcaacctccaactcctgggctcaggtgattctcctgcctcagcctcccgagtagctgggaccacaggcacccacc-ataatgccaacacctggctatcttttgttgcagtttgatcaggg-c
i otoGar3.GL873550         I 228 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=27997.000000
s hg38.chr6_GL000254v2_alt  1874527 8 +   4827813 Gtgttttt
s panTro5.chr6             30720175 8 + 175400573 GTGTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31143810 8 + 173848474 GTGTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     650757 8 +   2037526 GTGTTTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75318900 8 + 122973662 GTGTTCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31229615 8 + 172585720 CTGCTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30518629 8 - 170955103 ctgctttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     816047 8 +   1495729 CTGCTTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      38786 8 -    811324 CTGCTTTT
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1      68972 8 +    779361 CTGCTTTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     733885 8 -   1829203 GTGCTTTT
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           681000 8 +  18854210 caggtttg
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            68580 0 -    750284 C
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1317543 14 -   1771730 I
e calJac3.chr4             30899965 0 + 171630274 C
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=14161.000000
s hg38.chr6_GL000254v2_alt  1874535 7 +   4827813 tgcttgt
s panTro5.chr6             30720183 7 + 175400573 TGCTTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31143818 7 + 173848474 TGCTTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     650765 7 +   2037526 TGCTTGT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31229623 5 + 172585720 --TTTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30518637 5 - 170955103 --tttgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     816055 5 +   1495729 --TTTGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      38794 5 -    811324 --TTTGT
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1      68980 5 +    779361 --TTTGT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     733893 5 -   1829203 --TTTTG
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           681008 7 +  18854210 aacctgc
i otoGar3.GL873550         C 0 I 68
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            68580 0 -    750284 C
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1317543 14 -   1771730 I
e calJac3.chr4             30899965 0 + 171630274 C
e chlSab2.chr17            30074781 2720 -  71996105 I
e nomLeu3.chr1a            75318908 0 + 122973662 C

a score=49219.000000
s hg38.chr6_GL000254v2_alt  1874542 15 +   4827813 ttgtttgtttT-Gttt------
s panTro5.chr6             30720190 15 + 175400573 TTGTTTGTTTT-Gttt------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31143825 15 + 173848474 TTGTTTGTTTT-Gttt------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     650772 15 +   2037526 TTGTTTGTTTT-Gttt------
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31229628 15 + 172585720 TTGTTTGTTTT-Gttt------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30518642 15 - 170955103 ttgtttgtttt-gttt------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     816060 15 +   1495729 TTGTTTGTTTT-Gttt------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      38799 15 -    811324 TTGTTTGTTTT-Gttt------
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1      68985 15 +    779361 TTGTTTGTTTT-GCtt------
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     733898 15 -   1829203 TTGTTTGTTTT-Gttt------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30899965 15 + 171630274 ------gtttt-gtgggggcgg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            68580 16 -    750284 ------gttttggggggggcgg
i saiBol1.JH378327         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           681015 68 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1317543 14 -   1771730 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e nomLeu3.chr1a            75318908  0 + 122973662 C

a score=1914987.000000
s hg38.chr6_GL000254v2_alt  1874557 295 +   4827813 ttgtatttttagtagacatgatgtctggctctgttgttcaggctggtctcaaactcctggactcaagcgatcctcctgcctcagcctcccaaactgctggggttacaggcacgagccaccttgcccagctcaggcttttccattttggaaaaccagatgactccacccagatccaag------------accggtcctatggccccactcagaagtggactcagtgcacgaggaccattttccacatccctatgattgcat-cccaatcaatcagcagcacccattccctagccacctgcccagcaaa
s panTro5.chr6             30720205 295 + 175400573 ttgtatttttagtagacatgatgtctggctctgttgttcaggctggtctcaaactcctggactcaagcgatcctcctgcctcagcctcccaaactgctggggttacaggcatgagccactgtgcccagctcaggcttttccattttggaaaaccagatgactccacccagatccaag------------accggtcctgtggccccactcagaagtggactcagtgcacgaggactattttccacatccctatgattgcat-cccaatcaatcagcagcacccattccctagccacctgcccagcaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31143840 295 + 173848474 ttgtatttttagtagacatgatgtctggctctgttgttcaggctggtctcaaactcctggactcaagcgatcctcctgcctcagcctcccaaactgctggggttacaggcatgagccactgtgcccagctcaggcttttccattttggaaaaccagatgactccacccagatccaag------------accggtcctgtggccccactcagaagtggactcagtgcacgaggaccattttccacatccctatgattgcat-cccaatcaatcagcagcacccattccctagccacctgcccagcaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     650787 294 +   2037526 ttgtatttttagtagacatgatgtctggctctgttgttcaggctggtcttaaactcctggactcaagcgatcctcctgcctcagcctcccaaactgctggggttacaggcacgagccactgtgcccagctcaggcttttccattttggaaaaccagatgactcca-ccagatccaag------------accggtcctgtggccccactcagaagtggactcagtgcacgaggaccattttccacatccctatgattgcat-cccaatcaatcagcagcacccattccctagccacctgcccagcaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31229643 306 + 172585720 ttgtatttttagtagacatgacgtctagctctgttgttcaggctggtctcaagctcctggactcaagcgatcctcctgcctcagcctcccaaactgctggggttacaggcacaagccactgtgcccagctcaggcttttccattttggaaaaccagatgactccacccagatccaagacacaagattcaaccggtactgtggccccacccagaa--gaactcagtgcacgaggaccattttccacatccctctgattgcatccccagccaatcagcagcacccattccctagccacctgcccaccaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30518657 306 - 170955103 ttgtatttttagtagacatgacgtctagctctgttgttcaggctggtctcaaactcctggactcaagcgatcctcctgcctcagcctcccaaactgctggggttacaggcacaagccactgtgcccagctcaggcttttccattttggaaaaccagatgactccacccagatccaagacacaagattcaaccggtactgtggccccacccagaa--gaactcagtgcacgaggaccattttccacatccctctgattgcatccccagccaatcagcagcacccattccctagccacctgcccaccaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     816075 306 +   1495729 ttgtatttttagtagacatgacgtctagctctgttgttcaggctggtctcaaactcctggactcaagcgatcctcctgcctaagcctcccaaactgctggggttacaggcacaagccactgtgcccagctcaggcttttccattttggaaaaccagatgactccacccagatccaagacacaagattcaaccggtactgtggccccacccagaa--gaactcagtgcacgaggaccattttccacatccctctgattgcatccccagccaatcagcagcacccattccctagccacctgcccaccaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      38814 306 -    811324 ttgtatttttggtagacatgacgtctagctctgttgttcaggctggtctcaaactcctggactcaagcgatcctcctgcctcagcctcccaaactgctggggttacaggcacaagccactgtgcccagctcaggcttttccattttggaaaaccagatgactccacccagatccaagactcaagattcaaccggtcctgtggccccacccagaa--gaactcagtgcacgaggaccattttccacatccctctgattgcatccccagtcaatcagcagcacccattccctagccacctgcccaccaaa
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1      69000 306 +    779361 ttgtatttttggtagacatgacgtctagctctgttgttcaggctggtctcaaactcctggactcaagcgatcctcctgcctcagcctcccaaactgctggggttacaggcacaagccactgtgcccagctcaggcttttccattttggaaaaccagatgactccacccagatccaagactcaagattcaaccggtcctgtggccccacccagaa--gaactcagtgcacaaggaccattttccacatccctctgattgcatccccagccaagcagcagcacccattccctagccacctgcccaccaaa
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     733913 306 -   1829203 ttgtatttttagtagacatgacgtctagctctgttgttcaggctggtctcaaactcctggactcaagcgatcctcctgcctcagcctcccaaactgctggggttacaggcacaagccactgtgcccagctcaggcttttccattttggaaaaccagatgactccacccagatcgaagactcgagattcaacccgtcctgtggccccacccagaa--gaactcagtgcacgaggaccgttttccacatccttatgattgcatccccagtcaatcagcagcacccattccctagccacctgcccaccaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30899980 307 + 171630274 ttgtatttttagtagacatgagatctagctctgttgttcaggctgctctcaaactcctggactcaagcaatcctcctgtctcagcctcccaaactgctagagttacaggtgagagcctctgcacccagctcaggcatttgctttccagaaaaccagatgactccacccagatccaagactcaggattc-acttgtcctgtggccctacccagaagtggactcagtgcacaaggaccattttccacatccctatgatagcaacaccaatcaatcatcaccacccattccctagccacctgcccaccaat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            68596 300 -    750284 ttgtatttttagtagacatgaggtttagctctgttgttcaggctggtcgcaaactcctggactcaagcaatcctcctgtctcagcctcccaaactgctagggttacaggcgagagcctctgcacccagctcaggcttttgcttttcggaaaaccagatgactccacccagatccaagac-------tc-actcgtcctgtggccccacccagaagtggactcagtgcacaaggaccattttccacatccctgcgatagcacccccaatcaatcagcaccacccattccctagccacctgcccaccaat
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1317557 305 -   1771730 ttgtatttttagtagacatgaggtctagctctgttgttcaggctggtctcaaactcctggactcaagcaatcctcctgtctcagcctcccaaactgctagggttacaggcgagagcctctgcacccagctcaggcttttgcttttcagaaaaccaattgactcctcccggatccaagactcatgattc-actggtcctgtggccccacccagaagtggactc--tgcacaaggatcattttccacatccctatgatagcacccccagtcaatcagcaccacccatttcctagccacctgcccaccaat
i cebCap1.NW_016107755v1   I 14 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e otoGar3.GL873550           681015  68 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e nomLeu3.chr1a            75318908   0 + 122973662 C

a score=1993261.000000
s hg38.chr6_GL000254v2_alt  1874852 300 +   4827813 ctatc--------t-ttttttttc---tttttttcttgagac----------tc-tgtcgcccaggctgtagtgcagtggtgcaatcatggctcacagcagcttcaacctccctgg------------------cccagcctccca-agtcactgggactacaggtgtacaccaccacacctggctaatttttaaattttttgtagagatggtgtcttgctgtgttgtccaggctgatctcaaactcaaggactcaagcaatc----ctcctacctcagactcgaaaagtgctgggattacaggtgtaagctgccatgcccaacccaaact-atcttgaaaaagcct
s panTro5.chr6             30720500 310 + 175400573 ctatc--------t-ttttttttc---tttttttcttgagacagtatttcactc-tgtcgcccaggctgtagtgcagtggtgcaatcatggctcactgcagcttcaacctccctgg------------------cccagcctccca-agtcactgggactacaggtgtacaccaccacacctggctaatttttaaattttttgtagagatggtgtcttgctgtgttgtccaggctgatctcaaactcaaggactcaagcaatc----ctcctacctcagactcgaaaagtgctgggattacagctgtaagctgccatgcccaacccaaact-atcttgaaaaagcct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31144135 309 + 173848474 ctatc----------ttttttttc---tttttttcttgagacagtatttcactc-tgtcgcccaggctgtagtgcagtggtgcaatcatggctcactgcagcttcaacctccctgg------------------cccagcctccca-agtcactgggactacaggtgtacaccaccacacctggctaatttttaaattttttgtagagatggtgtcttgctgtgttgtccaggctgatctcaaactcaaggactcaagcaatc----ctcctacctcagactcgaaaattgctgggattacagctgtaagctgccatgcccaacccaaact-atcttgaaaaagcct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     651081 310 +   2037526 ctatc--------t-ttttttttc---tttttttcttgagacagtatttcactc-tgtcgcccaggctgtagtgcagtggtgcaatcatggctcactgcagcttcaacctccctgg------------------cccagcctccca-agtcactgggactacaggtgtacaccaccacacctggctaatttttaaattttttgtagagatggtgtcttgctgtgttgtccaggctgatctcaaactcaaggactcaagcaatc----ctcccacctcagactcgaaaagtgctgggattacaggtgtaagccgccatgcccaacccaaact-atcttgaaaaagcct
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31229949 313 + 172585720 ctatc--------tcttttttttc-ttttttttttttgagatagtatttcactc-tgtcactcaggctgtagtgcagtggtgcaatcatagctcactgcagcttcaacctccctgg------------------cccagtctccca-agtcactgggacttcaggtgtgcaccaccacacctggctaatttttaaattttttgtagagatggtgtcttgctatgttgtccaggctgatctcaaactcaaggactcaagcaatc----ctcccacctcagactcaaaaagtactgggattacaggtataagccgccatgcccaacccaaact-atcttgaaaaagccg
i rheMac8.chr4             C 0 I 6
s macFas5.chr4             30518963 314 - 170955103 ctatc--------tcttttttttc-ttttttttttttgagatagtatttcactc-tgtcactcaggctgtagtgcagtggtgcaatcatagctcactgcagcttcaacctccctgg------------------cccagtctaccacacccactgggacttcaggtgtgcaccaccacacctggctaatttttaaattttttgtagagatggtgtcttgctatgttgtccaggctgatctcaaactcaaggactcaagcaatc----ctcccacctcagactcaaaaagtactgggattacaggtataagccgccatgcccaacccaaact-atcttgaaaaagccg
i macFas5.chr4             C 0 I 6
s macNem1.NW_012012100v1     816381 314 +   1495729 ctatc--------tcttttttttctttttttttttttgagatagtatttcactc-tgtcactcaggctgtagtgcagtggtgcaatcatagctcactgcagcttcaacctccctgg------------------cccagtctccca-agtcactgggacttcaggtgtgcaccaccacacctggctaatttttaaattttttgtagagatggtgtcttgctatgttgtccaggctgatctcaaactcaaggactcaagcaatc----ctcccacctcagactcaaaaagtactgggattacaggtataagccgccatgcccaacccaaact-atcttgaaaaagccg
i macNem1.NW_012012100v1   C 0 I 6
s cerAty1.NW_012002513v1      39120 314 -    811324 ctatc--------tcttttttttctttttttttttttgagatagtatttcactc-tgtcactcaggctgtagtgcagtggtgcaatcatagctcactgcagcttcaacctccctgg------------------cccagtctccca-agtcactgagactacaggtgtgcaccaccacacctggctaatttttaaattttttgtagagatggtgtcttgctatgttgtccaggctgatctcaaactcaaggactcaagcaatc----ctcccacctcagactcaaaaagtactgggattacaggtataagccaccatgcccaacccaaact-atcttgaaaaagccg
i cerAty1.NW_012002513v1   C 0 I 6
s manLeu1.NW_012106264v1      69306 314 +    779361 ctatc--------tcttttttttctttttttttttttgagacagtatttcactc-tgtcactcaggctgtagtgcagtggtgcaatcatagctcactgcagcttcaacctccctgg------------------cccagtctccca-agtcactgagactacaggtgtgcaccaccacacctggctaatttttaaattttttgtagagatggtgtcttgttatgttgtccaggctgatctcaaacccaaggactcaagcaatc----ctcccacctcagactcaaaaagtactgggattacaggtgtaagccgccatgcccaacccaaact-atcttgaaaaagccg
i manLeu1.NW_012106264v1   C 0 I 6
s colAng1.NW_012115577v1     734219 312 -   1829203 ctatc--------t-ttttttttc-ttttttttttttgagacagtatttcactc-tgtcactcaggctgtagtgcagtggtgcaatcatggctcactgcagcttcaacctccctag------------------cccagtcttcca-agtcattgggactacaggtgtgcaccaccacacctggctaagttttaaattttttgtagagataatgtcttgctatgttgtccacgctgatctcaaactcaaggactcaagcaatc----ctcccacctcagactcgaaaagtattgggattacaggtgtaagctgccatgcccaacccaaact-attttgaaaaagcca
i colAng1.NW_012115577v1   C 0 I 6
s calJac3.chr4             30900287 337 + 171630274 ctatcatttttcttctttttttctttttttattctttgagacagtattttgctc-tgtcgcccaggctatagtgcagtggtgcaatcatggctcactgcagcctctacctccctggctcatgtgatcctctcacctcagcctccca-agtcactgggactacaggtgtacacaattacacctggcgaactttaaaaatttttgtagagatgctgtcttgctatgtt---caggctgatctcaaactcaagaactcaagcaatc----ttcccacctcagcctcaaaaagtgctggtattacaggtttaagtcaccatgcccagcccaaact-atcttgaaaaagccc
i calJac3.chr4             C 0 I 6
s saiBol1.JH378327            68896 337 -    750284 ctatc---tcttttctttttttctttttttattctttgagacagtatttcactc-tgtcgcccaggctataatgcagtggtgcgatcatggctcactgcagcttctacctccctggctcatgtgatgctctcacctcagcctccca-agtcactgggactataggtgtacaccattacacctggcgaattttaaaaatttttgtagagatgatgtcttgctatgttgtccaggctgatctcaaactcaagaactcaagcagtc----ctcccacctcagcctcaaaaagtgctggtattataggtgtaagtcaacatgcccagcccaaact-atcttggaaaagccc
i saiBol1.JH378327         C 0 I 6
s cebCap1.NW_016107755v1    1317862 341 -   1771730 ctgtctcttttcttctttttttcttttttaattctttgagacagtatttcactcttgttgcccaggctatagtgcgatggggcgatcatggctcactgcagcttccacctccctggctcatgcgatcctctcacctcagcctccca-ggtcactgggactacaggtgtacaccattacaactggcgaattttaaacatttttgcagagatggtgtcttgctatgttgtccaggctgatctcaaactcaggaactcaagcaatc----ctcccacctcagcctcaaaaagtgctggtattacaggtgttagtcaccatgcccaacccaaact-atcttgaaaaagccc
i cebCap1.NW_016107755v1   C 0 I 6
s otoGar3.GL873550           681083 307 +  18854210 ------------TTATTttttttttatttatttttttgagacagagcctcaagc-tgtccccctaggtagagtgctgtggc---atcacagctcacagcaacctccaactcctgggctcaagcgagtctcctgcctccgcctccca-agtaggtgggaccacaggtgcccactacaacgcctggctatttttttggctgcagccatcattgttgtttggcgg----gcctgggctggtttcaaacctaccaccttaggtgtatgtggctggcgctttagcc---------acttgagccacagg-------caccaagcc---TCTAAATTAATTTTAAAAGAACCG
i otoGar3.GL873550         I 68 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e nomLeu3.chr1a            75318908   0 + 122973662 C

a score=378087.000000
s hg38.chr6_GL000254v2_alt  1875152 51 +   4827813 ---------------------tcaaatttgagaggag-----------------gctgatataagtaataa--taagacttc--------agtctcctg
s panTro5.chr6             30720810 51 + 175400573 ---------------------tcaaatttgggaggag-----------------actgatataagtaataa--taagacttc--------agtctcctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31144444 51 + 173848474 ---------------------tcaaatttgggaggag-----------------actgatataagtaataa--taagacttc--------agtctcctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     651391 51 +   2037526 ---------------------tcaaatttgggaggag-----------------gctgatataagtaataa--taagacttc--------agtctcctg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75318908 51 + 122973662 ---------------------TCAAATTTGGGAggag-----------------gctgatataagtaataa--taagacttc--------agtctccag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31230268 51 + 172585720 ---------------------tcaaatttgggaggag-----------------gctgatataagtaataa--taagacttc--------agtctcctg
i rheMac8.chr4             I 6 C 0
s macFas5.chr4             30519283 51 - 170955103 ---------------------tcaaatttgggaggag-----------------gctgatataagtaataa--taagacttc--------agtctcctg
i macFas5.chr4             I 6 C 0
s macNem1.NW_012012100v1     816701 51 +   1495729 ---------------------tcaaatttgggaggag-----------------gctgatataagtaataa--taagacttc--------agtctcctg
i macNem1.NW_012012100v1   I 6 C 0
s cerAty1.NW_012002513v1      39440 51 -    811324 ---------------------tcaaatttgggaggag-----------------gctgatataagtaatag--taagacttc--------agtctcctg
i cerAty1.NW_012002513v1   I 6 C 0
s manLeu1.NW_012106264v1      69626 51 +    779361 ---------------------tcaaattcgggaggag-----------------gttgatataagtaatag--taagacttc--------agtctcctg
i manLeu1.NW_012106264v1   I 6 C 0
s colAng1.NW_012115577v1     734537 51 -   1829203 ---------------------tcaaatttgggaggag-----------------gctgatataagtaataa--taagacttc--------agtctcctg
i colAng1.NW_012115577v1   I 6 C 0
s calJac3.chr4             30900630 51 + 171630274 ---------------------tcaaatttggggggag-----------------gccaatttaagtaataa--tGAGACTTC--------AGTCTCCTG
i calJac3.chr4             I 6 I 8797
s saiBol1.JH378327            69239 51 -    750284 ---------------------tcaaatttggggggag-----------------gccaatttaagtaataa--tgagacttc--------agtctcctg
i saiBol1.JH378327         I 6 I 1
s cebCap1.NW_016107755v1    1318209 51 -   1771730 ---------------------tcaaatttgtggggag-----------------gccgatttaagtaataa--tGAGACTTC--------AGTCTCCTG
i cebCap1.NW_016107755v1   I 6 I 4294
s otoGar3.GL873550           681390 99 +  18854210 TAATATTTCTTCTACCAGAGGTTGACCATGAAAACAATTTTTTTAACCTCACTTGTTGATGTAGGTATAAACTTATGACCTTTGGGGGGAAGTGACTTA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=6921.000000
s hg38.chr6_GL000254v2_alt  1875203 3 +   4827813 -ttt
s panTro5.chr6             30720861 3 + 175400573 -ttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31144495 3 + 173848474 -ttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     651442 3 +   2037526 -ttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75318959 3 + 122973662 -ttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31230319 3 + 172585720 -ttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30519334 3 - 170955103 -ttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     816752 3 +   1495729 -ttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      39491 3 -    811324 -ttt
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1      69677 3 +    779361 -ttt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     734588 3 -   1829203 -ttt
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            69291 2 -    750284 -tt-
i saiBol1.JH378327         I 1 I 11032
s otoGar3.GL873550           681489 3 +  18854210 GTG-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1318260 4294 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=543397.000000
s hg38.chr6_GL000254v2_alt  1875206 112 +   4827813 --aactggctctatgtatataaaactct-------ttctctattgcaattcccctgtcttcataaattggctctatctgagcagcaggcaaaatgaaccaattgggtggttacaACAGTAT
s panTro5.chr6             30720864 112 + 175400573 --aactggctctatgtatataaaactct-------ttctctattgcaattcccctgtcttcataaattggctctatctgagcagcaggcaaaatgaaccgattgggtggttacaACAGTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31144498 112 + 173848474 --aactggctctatgtatataaaactct-------ttctctattgcaattcccctgtcttcataaattggctctatctgagcagcaggcaaaatgaaccgattgggtggttacaACAGTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     651445 112 +   2037526 --aactggctctatgtatataaaactct-------ttctctattgcaattcccctgtcttcataaattggctctatctgagcagcaggcaaaatgaaccgattgggtggttacaACAGTAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75318962 112 + 122973662 --aactggctctatgtatataaaactcc-------ttctctattgcaattcccctgtcttcataaattggttctataggagcagcaggcaaaatgaaccgattgggtggttacaACAGTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31230322 112 + 172585720 --aaccagctctatgtatataaaactct-------ttctctattgcaattcccctgtcttcataaattggctctgtctgagcagcaggcaaaatgaacccattgggtggttacaACAGTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30519337 112 - 170955103 --aaccagctctatgtatataaaactct-------ttctctattgcaattcccctgtcttcataaattggctctgtctgagcagcaggcaaaatgaacccattgggtggttacaACAGCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     816755 112 +   1495729 --aaccagctctatgtatataaaactct-------ttctctattgcaattcccctgtcttcataaattggctctgtctgagcagcaggcaaaatgaacccattgggtggttacaACAGCAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      39494 112 -    811324 --aaccagccctatgtatataaaactct-------ttctctattgcaattcccctgtcttcataaattggctctgtctgagcagcaggcaaaatgaacccactgggtggttacaACAGCAT
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1      69680 112 +    779361 --aaccagccctatgtatataaaactct-------ttctctattgcaattcccctgtcttcataaattggctctgtctgagcagcaggtaaaatgaacccattgggtggttacaATAGCAT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     734591 111 -   1829203 --aaccagctctatgtatataaaactct-------ttctctattgcaattcccctgtcttcataaattggctctgtctgagcagcaggcaaaatgaacccattggg-ggttacaACAGCAT
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           681492  96 +  18854210 ACCATTAATGTTAAATATTTAAAATATTCATAATCTTTGATTTAGCAGTTTCACT-------TAAATTAG---tatcttagc---------------cagtttgggctgctaaaacagaat
i otoGar3.GL873550         C 0 I 161
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1318260 4294 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=831306.000000
s hg38.chr6_GL000254v2_alt  1875318 172 +   4827813 CAGCATATACAGTAGAATTGtaatatccatcatataccaactgcaaattaattttaaaagatatattgttaaaaccatataagtgatataagtaatttacagaagaataaattcaattgaacaataaatatgaaattattttcaacccctccagtcatatagtaaaagtaaa
s panTro5.chr6             30720976 172 + 175400573 CAGCATATACAGTAGAATTGTAATATCCATCATATACCAACTGCAAATTAATTTTAAAAGATATATTGTTAAAAGCATATAAGTGATATAAGTAATTTACAGAAGAATAAATTCAATTGAACAATAAATATGAAATTATTTTCAACCCCTCCAGTCATATAGTAAAAGTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31144610 172 + 173848474 CAGCATATACAGTAGAATTGTAATATCCATCATATACCAACTGCAAATTAATTTTAAAAGATATATTGTTAAAAGCATATAAGTGATATAAGTAATTTACAGAAGAATAAATTCAATTGAACAATAAATATGAAATTATTTTCAACCCCTCCAGTCATATAGTAAAAGTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     651557 172 +   2037526 CAGCATATACAGTAGAATTGTAATATCCATCATATACCAACTGCAAATTAATTTTAAAAGATATATTGTTAAAAGCATATAAGTGATATAAGTAATTTACAGAAGAATAAATTCAATTGAACAATAAATATGAAATTATTTTCAACCCCTCCAGTCATATAGTAAAAGTAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75319074 171 + 122973662 CAGCATATACAGTAGAAATGtaatatccatcatatagcaattgcaaattaattttaaaaggtattatattaaaagcatataagtgatataagtaa-ttacagaagaataaattcaattggacaataaatatgaaattattttcaacccctccagtcatatagtaaaagtaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31230434 172 + 172585720 CAGCATATACAGCAGAGTTGTAATATCCATCATATAGCAACTGCAAATTAATTTTAAAAGATATATTGTTAaaagcatataaatgatataagtaatttacagaagaataaattcaattggacaataaatatgaaattattttcaacccctccagtcatatagtaaaagtaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30519449 172 - 170955103 CAGCATATACAGCAGAGTTAtaatatccatcatatagcaactgcaaattaattttaaaagatatattgttaaaagcatataaatgatataagtaatttacagaagaataaattcaattggacaataaatatgaaattattttcaacccctccagtcatatagtaaaagtaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     816867 172 +   1495729 CAGCATATACAGCAGAGTTGTAATATCCATCATATAGCAACTGCAAATTAATTTTAAAAGATATATTGTTAAAAGCATATAAATGATATAAGTAATTTACAGAAGAATAAATTCAATTGGACAATAAATATGAAATTATTTTCAACCCCTCCAGTCATATAGTAAAAGTAAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      39606 172 -    811324 CAGCATATACAGCAGAGTTGTAATATCCATCATATAGCAACTGCAAATTAATTTTAAAAGATATATTGTTAAAAGCATATAAATGATATAAGTAATTTACAGAAGAATAAATTCAATTGGACAATAAATATGAAATTATTTTCAACCCCTCCAGTCATATAGTAAAAGTAAA
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1      69792 172 +    779361 CAGCATATACAGCAGAGTTGTAATACCCATCATATAGCAACTGCAAATTAATTTTAAAAGATATATTGTTAAAATCATATAAATGATATAAGTAATTTACAGAAGAATAAATTCAATTGGACAATAAATATGAAATTATTTTCAACCCCTCCAGTCATATAGTAAAAGTAAA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     734702 172 -   1829203 CAGCATGTACAGCAGAGTTGTAATATCCATCATATAGCAACTGCAAATTAATTTTAGAAGATATATTGTTAAAAGCATATAAATGATATAAGTAATTTACAGAAGAATAAATTCAATTGGACAATAAATATGAAATTATTTTCAACCCCGCCAGTCATATATTAAAAGTAAA
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           681588 161 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1318260 4294 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=856150.000000
s hg38.chr6_GL000254v2_alt  1875490 174 +   4827813 ttaaaac--ttt---------tttttttttt-agacagagtctcactctgtcgcccagggtggagtgcagtggcgcgatctcagcccaccgaaacctctgcctcctgggttcaagcg------attctcctgcctcagcctcctgagtagctgggattacaggcgcccgccaccatgcccggctaatttttg
s panTro5.chr6             30721148 175 + 175400573 TTAAAAC-Attt---------tttttttttt-agacagagtctcactctgtcgcccagggtggagtgcagtggcgcgatctcagcccaccgaaacctctgcctcctgggttcaagcg------attctgctgcctcagcctcctgagtagctgggattacaggcgcccgccaccatgcccggctaatttttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31144782 175 + 173848474 TTAAAGC-Attt---------tttttttttt-agacagagtctcactctgtcgcccagggtggagtgcagtggcgcgatctcagcccaccgaaacctctgcctcctgggttcaagcg------attctgctgcctcagcctcctgagtagctgggattacaggcgcccgccaccatgcccggctaatttttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     651729 173 +   2037526 TTAAAAC--ttt---------tttttttttt-agacagagtctcactctgtcgcccagggtggagtgcagtggcgcgatctcagcccaccgaaacctctgcctcct-ggttcaagcg------attctcctgcctcagcctcctgagtagctgggattacaggcgcccgccaccatgcccggctaatttttg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75319245 176 + 122973662 ttaaaacaattt---------tttttttttt-agacagagtctcactctgtcgcccaggctggagtgcagtggcacgatctcagcccaccacaacctctgcctcctgggttcaagca------attctcctgcctcagcctcctgagtagctgggattacaggcgcccgccaccatgcccggctaatttttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31230606 179 + 172585720 ttaaaat-aa-----------tttttttttt-agatggagtctcactctgttgcccaggctggagtgcagtgatgcaatctcagcccaccgcaacctctgcctcccaggttcaagcgattgtgattctcctgcctcagcctcctgagtagctgggattacaggtgcctgccaccacgcccagctaatttttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30519621 179 - 170955103 ttaaaat-aa-----------tttttttttt-agatggagtctcactctgttgcccaggctggagtgcagtgatgcaatctcagcccaccgcagcctctgcctcccaggttcaagcgattgtgattctcctgcctcagcctcctgagtagctgggattacaggtgcctgccaccacgcccagctaatttttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     817039 179 +   1495729 TTAAAAT-AA-----------tttttttttt-agatggagtctcactctgttgcccaggctggagtgcagtgatgcaatctcagcccaccgcaacctctgcctcccaggttcaagcgattgtgattctcctgcctcagcctcctgagtagctgggattacaggtgcctgccaccacgcccagctaatttttg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      39778 179 -    811324 TTAAAAT-AA-----------tttttttttt-agatggagtctcactctgttgcccaggctggagtgcagtgatgcaatctcagcccaccgcaacctctgcctcccaggttcaagcgattgtgattctcctgcctcagcctcctgagtagctgggattacaggtgcctgccaccacgcccagctaatttttg
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1      69964 180 +    779361 TTAAAAT-AC-t---------tttttttttt-agatggagtctcactctgttgcccaggctggagtgcagtggtgcaatctcagcccaccacaacctctgcctcccaggttcaagcaattgtgattctcccgcctcagcctcctgagtagctgggattacaggcgcctgccaccacgcccagctaatttttg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     734874 179 -   1829203 TTAAAAT-AA-----------ttttttttttaaaatggagtctcactctgttgcccaggctggagtgcagtggtgcaatctcagcccaccgcaacctctgcctcccaggttc-agtgattgtcattctcctgcctcagcctcctaagtagctgggattatagacgcccgccaccacacccagctaatttttg
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           681749 172 +  18854210 ----------ttctttctttctttttttttg-agacagagtctgaagctgttgccctgggtagagagctgtggcac---cacagctcacagcaacctcaaactcttgggcttaagcg------attctcttgcctcagcctcccaagtagctgggactacaggcacccgtcacaatgcccagctattttttg
i otoGar3.GL873550         I 161 I 136
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1318260 4294 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=2142729.000000
s hg38.chr6_GL000254v2_alt  1875664 441 +   4827813 tatttttagtagagacgaggttccaccatgttggccaggctggtctcgaactcctgatctcaagtgatccatcaaccttggcctcccaaaatgctgggattacaggcatgagccactgcacccagcttaaaacaatgTTTTAACCTCttgttgataagagtgtaaacttatcacctttgggggaagtaatttagtacctattaatattaaacattttcataacctttgatttagcatttccacttaaattagtgccttagttagtttgggctgctataacaacaccacagcctggatggcttatagacaacagaggtttatttttcacagttcatggggctgggaagttcaggtatcaaggcactggcagttaaggtgcttggtgaaggtcctttttctgttcccagttcacagatgtcccaccttcattttctttctttt
s panTro5.chr6             30721323 441 + 175400573 tatttttagtagagacgaggttccaccatgttggccaggctggtctcgaactcctgacctcaagtgatccatcaaccttggcctcccaaaatgctgggattacaggcatgagccactgcacccagcTTAAAACAATGTTTTAACCTCttgttgataagagtgtaaacttatcacctttgggggaagtaatttagtacctattaatattaaacattttcataacctttgatttagcatttccacttaaattagtgccttagttagtttgggctgctataacaacaccacagcctggatggcttatagacaacagaggtttatttttcacagttcatggggctgggaagttcaggtatcaaggcactggcagttaaggtgcttggtgaaggtcctttttctgttcccagttcacagatgtcccaccttcattttctttctttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31144957 441 + 173848474 tatttttagtagagacgaggttccaccatgttggccaggctggtctcgaactcctgacctcaagtgatccatcaaccttggcctcccaaaatgctgggattacaggcatgagccactgcacccagcTTAAAACAATGTTTTAACCTCttgttgataagagtgtaaacttatcacctttgggggaagtaatttagtacctattaatattaaacattttcataacctttgatttagcatttccacttaaattagtgccttagttagtttgggctgctataacaacaccacagcctggatggcttatagacaacagaggtttatttttcacagttcatggggctgggaagttcaggtatcaaggcactggcagttaaggtgcttggtgaaggtcctttttctgttcccagttcacagatgtcccaccttcattttctttctttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     651902 441 +   2037526 tatttttagtagagatgaggttccaccatgttggccaggctggtctcgaactcctgacctcaagtgatccatcaaccttggcctcccaaggtgctgggattacaggcatgagccactgcacccagcTTAAAACAATGTTTTAACTTCttgttgataagagtgtaaacttatcacctttgggggaagtaatttagtacctattaatattaaacattttcataacctttgatttagcatttccacttAAATTAGtgccttagttagtttgggctgctataacaacaccacagcttggatggcttatagacaacagaggtttatttttcacagttcatggggctgggaagttcaggtatcaaggcactggcagttaaggtgcttggtgaaggtcctttttctgttcccagttcacagatgtcccaccttcATtttctttatttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75319421 441 + 122973662 tatttttagtagagacgaggttccaccatgttggccaggctggtctcaaactcgtgacctcaagtgatccatcaaccttggcctcccaaagtgctgggattgcaggcatgagccactgcacccagccTAAAACAATGTTTTAACCTCttattgataagagtgtaaacttatcacctttgggggaagtaatttagtacctattaatattaaacattttcataacctttgatttagcatttccacttAAATTAGtgccttagttagtttgggctgctataacaacaccacagcctggatggcttatagacaacagaggtttatttttcacagttcatggggctgggaagttcaggtatcaaggcactggcagttaaggtgcttgctgaaggtcctttttctgttcctggttcacagatgtctcaccttcattttcttttcctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31230785 437 + 172585720 tacttttagtagagatgaggttccaccatgttggccaggctggtctcaaactcctgacctcaggtgatccatcaaccttggcctcccatagtgctgggattacaggaatgagccactgcacccagccTAAAACAATGTTTTAACCTCTtgttgataagagtataaactgatcacttttgggggaagtaatttagtacctattaatattaaacattttcataacctttgattcagcatttccacttaaattagtgcc----ttagtttgggctgctataacaacaccacagactggatggcttatagacgacagaggtttatttcccacagttcgtggggctgggaagttcaggtatcaagacactggcagttaaggtgtttggtgaaggtccttttcctgttcctagttcacagatgtcccaccttcattttctttctttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30519800 437 - 170955103 tacttttagtagagatgaggttccaccatgttggccaggctggtctcaaactcctgacctcaggtgatccatcaaccttggcctcccatagtgctgggattacaggaatgagccactgcacccagcctaaaacaatgttttaACCTCTtgttgataagagtataaactgatcacttttgggggaagtaatttagtacctattaatattaaacattttcataacctttgattcagcatttccacttAAATTAGTGCC----ttagtttgggctgctataacaacaccacagactggatggcttatagacaacagaggtttatttcccacagttcgtggggctgggaagttcaggtatcaagacactggcagttaaggtgtttggtgaaggtccttttcctgttcctagttcacagatgtcccaccttcattttctttctttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     817218 437 +   1495729 tacttttagtagagatgaggttccaccatgttggccaggctggtctcaaactcctgacctcaggtgatccatcaaccttggcctcccatagtgctgggattacaggaatgagccactgcacccagccTAAAACAATGTTTTAACCTCTtgttgataagagtataaactgatcacttttgggggaagtaatttagtacctattaatattaaacattttcataacctttgattcagcatttccacttaaattagtgcc----ttagtttgggctgctataacaacaccacagactggatggcttatagacgacagaggtttatttcccacagttcgtggggctgggaagttcaggtatcaagacactggcagttaaggtgtttggtgaaggtccttttcctgttcctagttcacagatgtcccaccttcattttctttctttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      39957 437 -    811324 tacttttagtagagatgaggttccaccatgttggccaggctggtctcaaactcctgacctcaggtgatccatcaaccttggcctcccatagtgctgggattacaggaatgagctactgcacccagccTAAAACAATGTTTTAACCTCTTGTTGATAAGAGTATAAACTGATCACTTTTGGGGGAAGTAATTTAGTACCTATTAATATTAAACATTTTCATAACCTTTAATTCAGCATTTCCACTTAAATTAGtgcc----ttagtttgggctgctataacaacaccacagactggatggcttatagacaacagaggtttatttcccacagttcgtggggctgggaagttcaggtatcaagacactggcagttaaggtgtttggtgaaggtccttttcctgttcctagttcacagatgtcccaccttcattttctttctttt
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1      70144 437 +    779361 tatttttagtagagatgaggttccaccatgttggccaggctggtctcaaactcctgacctcaggtgatccatcaactttggcctcccatagtgctgggattacaggaatgagcccctgcacccagccTAAAACAATGTTTTAACCTCTTGTTGATAAGAGTATAAACTGATCACTTTTGGGGGAAGTAATTTAGTACCTATTAATATTAAACATTTTCATAACCTTTGATTCAGCATTTCCACTTAAATTAGtgcc----ttagtttgagctgctataacaacaccacagactggatggcttatagacaacagaggtctatttcccacagttcgtggggctgggaagttcaggtattaatacactggcagttaaggtgtttggtgaaggtccttttcctgttcctagttcacagatgtcccaccttcATTTTCTTTCTTTT
i manLeu1.NW_012106264v1   C 0 I 8137
s colAng1.NW_012115577v1     735053 437 -   1829203 tatttttagtagagatgaggttccaccatgttggccaggctggtctcaaactcctgacctcaggtgatccatcaaccttggcctcccatagtgctgggattacaggaatgagccactgcacccagccTAAAACAGTGTTTTAACCTCTTGTTGATAAGAGTATAAACTGATCACCTTTGGGGGAAGTAATTTAGTACCTATTAATATTAAACATTTTCATAACCTTTGATTCAGCATTTCCACTTAAATTAGtgcc----ttagtttgggctgctataacaccaccacagactggatggcttatagacaacagaggtttatttcccacagttcttggggctgggaagttcaggtatcaagacactggcagttaaggtgtttggtgaaggtccttttcctgttcctagttcacagatgtcccaccttcattttctttctttt
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           681921 136 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1318260 4294 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=23206.000000
s hg38.chr6_GL000254v2_alt  1876105 7 +   4827813 ccttctt
s panTro5.chr6             30721764 7 + 175400573 ccttctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31145398 7 + 173848474 ccttctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     652343 7 +   2037526 ccttctt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75319862 7 + 122973662 ctttctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31231222 7 + 172585720 ccttccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30520237 7 - 170955103 ccttccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     817655 7 +   1495729 ccttccc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      40394 7 -    811324 ccttctt
i cerAty1.NW_012002513v1   C 0 I 53
s colAng1.NW_012115577v1     735490 7 -   1829203 ccttctc
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           681921 136 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1318260 4294 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e manLeu1.NW_012106264v1      70581 8137 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=3276.000000
s hg38.chr6_GL000254v2_alt  1876112 1 +   4827813 t
s panTro5.chr6             30721771 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31145405 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     652350 1 +   2037526 t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75319869 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31231229 1 + 172585720 t
i rheMac8.chr4             C 0 I 69
s macFas5.chr4             30520244 1 - 170955103 t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     817662 1 +   1495729 t
i macNem1.NW_012012100v1   C 0 C 0
s colAng1.NW_012115577v1     735497 1 -   1829203 t
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           681921 136 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1318260 4294 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e manLeu1.NW_012106264v1      70581 8137 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e cerAty1.NW_012002513v1      40401 53 -    811324 I

a score=21605.000000
s hg38.chr6_GL000254v2_alt  1876113 13 +   4827813 ttctttctt----tctt
s panTro5.chr6             30721772 13 + 175400573 ttctttctt----tctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31145406 13 + 173848474 ttctttctt----tctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     652351 13 +   2037526 ttctttctt----tctt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75319870 17 + 122973662 ttctttctttttctttc
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30520245 13 - 170955103 cccttcctt----cctt
i macFas5.chr4             C 0 I 46
s macNem1.NW_012012100v1     817663 13 +   1495729 cccttcctt----cctt
i macNem1.NW_012012100v1   C 0 I 51
s colAng1.NW_012115577v1     735498 13 -   1829203 tccttcctt----cctt
i colAng1.NW_012115577v1   C 0 I 1125
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           681921 136 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1318260 4294 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e manLeu1.NW_012106264v1      70581 8137 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e cerAty1.NW_012002513v1      40401 53 -    811324 I
e rheMac8.chr4             31231230 69 + 172585720 I

a score=13126.000000
s hg38.chr6_GL000254v2_alt  1876126 10 +   4827813 tttctctttc
s panTro5.chr6             30721785 10 + 175400573 tttctctttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31145419 10 + 173848474 tttctctttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     652364 10 +   2037526 tttctctttc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75319887 10 + 122973662 tttctttttc
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30520304 10 - 170955103 ttccttcctt
i macFas5.chr4             I 46 C 0
s macNem1.NW_012012100v1     817727 10 +   1495729 ttccttcctt
i macNem1.NW_012012100v1   I 51 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           681921 136 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1318260 4294 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     735511 1125 -   1829203 I
e manLeu1.NW_012106264v1      70581 8137 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e cerAty1.NW_012002513v1      40401 53 -    811324 I
e rheMac8.chr4             31231230 69 + 172585720 I

a score=1104948.000000
s hg38.chr6_GL000254v2_alt  1876136 370 +   4827813 tctttctttctttctc--tctgtctttcttccttctttcttctt----------------------tctttc--------ttttttttttttttttttaacagatgagggt-tttctctgtcacccaggtggctggagtgcaatggtgtaagcttggctcactgcagcctcaacctcctgggctcaactgatcttcccacctcagccgcccgagtagctgggactacaggtgcatgccaccaggcccagctaaatttttgtaattttgtagagacgaggtctcattatgttgcccaggctggtcttgaactcctgggctgaagcagtcctcccacctcggcctcccagatgctgggattacagacgtgagccaccacacccggcccatcccaccgccttgctg
s panTro5.chr6             30721795 365 + 175400573 tctttctttctttctc--tctgtctttcttccttctttcttctt----------------------t-------------ttttttttttttttttttaacagatgagggt-tttctctgtcacccaagtggctggagtgcaatggtgtaagcttggctcactgcagcctcaacctcctgggctcaactgatctttccacctcagccgcccaagtagctgggactacaggtgcatgccaccaggcccagctaaatttttgtaattttgtagagacgaggtctcattatgttgcccaggctggtcttgaactcctgggctgaagcagtcctcccacctcggcctcccaaatgctgggattacagacgtgagccaccacacccggcccatcccaccgccttgctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31145429 362 + 173848474 tctttctttctttctc--tc--tctttcttccttctttctttct------------------------------------tcttttttttttttttttaacagatgagggt-tttctctgtcacccaagtggctggagtgcaatggtgtaagcttggctcactgcagcctcaacctcctgggctcaactgatctttccacctcagccgcccaagtagctgggactacaggtgcatgccaccagacccagctaaatttttgtaattttgtagagacgaggtctcattatgttgcccaggctggtcttgaactcctgggctgaagcagtcctcccacctcggcctcccagatgctgggattacagacgtgagccaccacacccggcccatcccaccaccttgctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     652374 374 +   2037526 ----tctttctttctc--tctgtctttcttccttctttcttctt----------------------tctttcttttttcttttcttttttttttttttaacagatgagggt-tttctctgtcacccaggtggctggagtgcaatggtgtaagcttggctcactgcagcctcaacctcctgggctcaactgatcttcccacctcagccgcccgagtagctgggactacaggtgcatgccaccaggcccagctaaatttttgtaattttgtagagacgaggtcttattatgttgcccaggctggtcttgaactcctgggctgaagcagtcctcccacctcggcctcccagatgctgggattacagacgtgagccaccacacccggccCATCCCACCGCCTTGCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75319897 369 + 122973662 tttttctttctttctctttctgtctttcttccttctttcttctt----------------------tcttt---------ctttttttttttttttttaacagatgagggtctttctctgtcacccaggtggctggagtgcaatggtgtaagcttagctcactgcagcctcaacctcctgggctcaactgatct---cacctcagcctcctgagtagctgggactacaggtgcatgccaccaggccaagctaaatttttgtaattttgtagagacgaggtctcattatgttgcccaggctggtcttgaactcctgggctgaagcagtcctcccaccttggcctcccagatgctgggattacagacgtgagccaccacacccggccCATCCCACCATCTTGCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31231299 401 + 172585720 tccttccttccttcct--tctttctttcttccttctttctttttctctttctctttcttcttttcttctttctttcttctttttcttcttttttctttaacagatgagggtctttctctgtcacccaggtggctggagtacaatggtgcaagcttggctgactgcagcctcaacctcctgggctcaaccgatcttcccacctcaggctcccaagtagctgggactacaggttcataccaacaggcccagctagatttttgtaattttgtagagccgagctctcgttacgttgcccaggctggtcttgaactcctgggctgaagcagtccttccacctcggcctcccagatgctggggttacagacgtaagctaccacacccagcccatcccaccgtcttgctg
i rheMac8.chr4             I 69 C 0
s macFas5.chr4             30520314 401 - 170955103 tccttccttccttcct--tctttcttccttccttctttctttttctctttctctttcttcttttcttctttctttcttctttttcttcttttttctttaacagatgagggtctttctctgtcacccaggtggctggagtacaatggtgcaagcttggctgactgcagcctcaacctcctgggctcaaccgatcttcccacctcaggctcccaagtagctgggactacaggttcataccaacaggcccagctagatttttgtaattttgtagagacgagctctcgttacgttgcccaggctggtcttgaactcctgggctgaagcagtccttccacctcggcctcccagatgctggggttacagacgtaagctaccacacccagcccatcccaccgtcttgctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     817737 401 +   1495729 tccttccttccttcct--tctttctttcttccttctttctttttctctttctctttcttcttttcttctttctttcttctttttcttcttttttctttaacagatgagggtctttctctgtcacccaggtggctggagtacaatggtgcaagcttggctgactgcagcctcaacctcctgggctcaaccgatcttcccacctcaggctcccaagtagctgggactacaggttcataccaacaggcccagctagatttttgtaattttgtagagacgagctctcgttacgttgcccaggctggtcttgaactcctgggctgaagcagtccttccacctcggcctcccagatgctggggttacagccgtaagctaccacacccagcccatcccaccgtcttgctg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      40454 397 -    811324 tccttccttccttcct--tctttcttccttccttctttctttttctctttc----tcttcttttcttctttctttcttctttttcttcttttttctttaacagatgagggtctttctctgtcacccaggtggctggagtacaatggtgcaagcttggctgactgcagcctcaacctcctgggctcaaccgatcttcccacctcaggctcccaagtagctgggactacaggttcataccaacaggcccagctagatttttgtaattttgtagagatgagctctcgttacgttgcccaggctggtcttgaactcctgggctgaagcagtccttccacctcggcctcccagatgctggggttacagacgtaagctaccacacccagccCATCCCACCGTCTTGCTG
i cerAty1.NW_012002513v1   I 53 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           681921 136 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1318260 4294 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     735511 1125 -   1829203 I
e manLeu1.NW_012106264v1      70581 8137 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=806908.000000
s hg38.chr6_GL000254v2_alt  1876506 248 +   4827813 tggcagggagagcaatagcctctcttcatctctttataagggcaccaatcccattatg---------cccccatgactttatccaaacctcattatagccc--aggccccacctccaaagactatcacattgggaattagagagcttcaacatacagtttgaggggactacaaacattccattcatggcaactaggaatttatagaaacactccctctagtgt-gcaaaaaagtaagt-acaaga--atttttggggTTTTTT
s panTro5.chr6             30722160 248 + 175400573 tggcagggagagcaatagcctctcttcatctctttataagggcaccaatcccattatg---------cccccatgactttatccaaacctcattatagccc--aggccccacctccaaagactatcacattgggaattagagagcttcaacatacagtttgaggggactacaaacattccattcatagcaactaggaatttatagaaacactccctctagtgt-gcaaaaaagtaagt-acaaga--atttttgggttttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31145791 248 + 173848474 tggcagggagagcaatagcctctcttcatctctttataagggcaccaatcccattatg---------cccccatgactttatccaaacctcattatagccc--aggccccacctccaaagactatcacattgggaattagagagcttcaacatacagtttgaggggactacaaacattccattcatagcaactaggaatttatagaaacactccctctagtgt-gcaaaaaagtaagt-acaagA--ATTTTTGGGGTTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     652748 248 +   2037526 tggcagggagagcaatagcttctcttcatctctttataagggcaccaatcccattatg---------cccccatgactttatccaaacctcattatagccc--aggccccacctccaaagactatcacactgggaattagagagcttcaacatacagtttgaggggactacaaacattccattcatagcaACTAGGAATTTATAGAAACACTCCCTCTAGTGT-GCAAAAAAGTAAGT-ACAAGA--ATTTTGGGATTttttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75320266 250 + 122973662 Tggcagggagagcaatagcctcccttcatctctttataagggtaccaatcccattatg---------cccccatgactttatccaaacctcattatggcccaaaggccccacctccaaagaccatcatattgggaattagagagtttcaacatgcagtttgaagtgactacaaacattccattcgtagcaACTAGGAATTTATAGAAACACTCCCTCTAGTGT-GCAAAAAAGTAAGT-ACAAGA--ATTTTTGAGttttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31231700 244 + 172585720 tggccaggagaccaatagcttcccttcatctctttataagggcaccaatcccattatg---------cccccatgactttatccaaacctcggtatggcca--aag----gcctccaaagactgtcatattaggaattagagagcttcaacatacagtttgaggggaatacaaacattccattcgtagcaactaggaatttatagaaacactccctctggtgt-gcaaaaaagtaagt-acaaga--atttttggtgcttttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30520715 244 - 170955103 tggccaggagaccaatagcttcccttcatctctttataagggcaccaatcccattatg---------cccccatgactttatccaaacctcggtatggcca--aag----gcctccaaagactgtcatattaggaattagagagcttcaacatacagtttgaggggaatacaaacattccattcgtagcaACTAGGAATTTATAGAAACACTCCCTCTGGTGT-GCAAAAAAGTAAGT-ACAAGA--ATTTTTGGTGCTTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     818138 244 +   1495729 tggccaggagaccaatagcttcccttcatctctttataagggcaccaatcccattatg---------cccccatgactttatccaaacctcggtatggcca--aag----gcctccaaagactgtcatattaggaattagagagcttcaacatacagtttgaggggaatacaaacattccattcgtagcaactaggaatttatagaaacactccctctggtgt-gcaaaaaagtaagt-acaaga--atttttggtgcttttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      40851 244 -    811324 TGGCCAGGAGACCAATAGCTTCCCTTCAtctctttataagggcaccaatcccattatg---------tccccatgactttatccaaacctcggtatggcca--aag----gcctccaaagactgtcatattaggaattagagagcttcaacatacagtttgaggggaatacaaacattccattcgtagcaACTAGGAATTTATAGAAA-ACT-CCTCTGGTGTGGCAAAAAAGTAAGTAACAAGT--AATTTTGGTGGCTTtt
i cerAty1.NW_012002513v1   C 0 C 0
s otoGar3.GL873550           682057 252 +  18854210 tggcaa-gagacagaggacctcttttcaaccctttctaagagcaccaatcccatcatggaggctccatccccatgacttcatccaaactgctttcc--caa--aagcctcacctccaaataccatcacattggggatt--agagctccaacatacaaatgtggggagacgaaaacatg-aggtcacagcaGTTAGAAAGTtatagaaatgctccccctagtgt-gcaagaaa-taagt-gcaagagtattttcaaggtattat
i otoGar3.GL873550         I 136 I 152
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1318260 4294 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     735511 1125 -   1829203 I
e manLeu1.NW_012106264v1      70581 8137 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=45371.000000
s hg38.chr6_GL000254v2_alt  1876754 27 +   4827813 TGT-Tttttgttttgttttgttttgttt
s panTro5.chr6             30722408 27 + 175400573 tgt-tttttgttttgttttgttttgttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31146039 27 + 173848474 TGT-Tttttgttttgttttgttttgttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     652996 17 +   2037526 tttgtttttgttttg-----------tt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75320516 17 + 122973662 aat-tttttgttttg----------ttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31231944 27 + 172585720 tgt-TTTCTGtttcgttttgttttgttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30520959 27 - 170955103 TGT-TTTCTGtttcgttttgttttgttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     818382 27 +   1495729 tgt-TTTCTGtttcgttttgttttgttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      41095 26 -    811324 ttg-tttct-tttcgttttgttttgttt
i cerAty1.NW_012002513v1   C 0 I 1016
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           682309 152 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1318260 4294 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     735511 1125 -   1829203 I
e manLeu1.NW_012106264v1      70581 8137 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=202050.000000
s hg38.chr6_GL000254v2_alt  1876781 122 +   4827813 tgttttctgagacagggtctcgctgtcacccaggcatg-gtacagtagcataatcacagctcattgaagcctcaacttcccaggctcaagcaatcctccccgctcagcttcccgaatagctag
s panTro5.chr6             30722435 122 + 175400573 tgttttctgagacagggtctcgctgtcacccaggcatg-gtacagtagcataatcacagctcattgaagcctcaacttcccaggctcaagcaatcctccccgctcagcttcccgaatagctag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31146066 122 + 173848474 tgttttctgagacagggtctcgctgtcacccaggcatg-gtacagtagcataatcacagctcattgaagcctcaacttcccaggctcaagcaatcctccccgctcagcttcccgaatagttag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     653013 122 +   2037526 tgttttctgagacagggtctcgctgtcacccaggcatg-gtacagtagcataatcacagctcactgaagcctcaaattcccaggctcaagcaatcctccccgctcagcttcccgaatagctag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75320533 122 + 122973662 tgttttctgagacagggtctcgctgtcacccaggcatg-gtacagtagcatgatcacagctcattgaagcctcaatttcccaggctcaagcaatcctcccacctcagcttcccgaatagctag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31231971  85 + 172585720 -------------tgggtctcgctgtcacccaggctggagtacggtagcatgatcacatctcat-------------------------gcaatcctcccacctcagcttcctaaatagctag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30520986  85 - 170955103 -------------tgggtctcgctgtcacccaggctggagtacggtagcatgatcacatctcat-------------------------gcaatcctcccacctcagcttcctaaatagctag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     818409  85 +   1495729 -------------tgggtctcgctgtcacccaggctggagtacggtagcatgatcacatctcat-------------------------gcaatcctcccacctcagcttcctaaatagctag
i macNem1.NW_012012100v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           682309 152 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1318260 4294 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     735511 1125 -   1829203 I
e manLeu1.NW_012106264v1      70581 8137 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e cerAty1.NW_012002513v1      41121 1016 -    811324 I

a score=73899.000000
s hg38.chr6_GL000254v2_alt  1876903 34 +   4827813 gactataggcatacaccaccacacccagctaatt-------
s panTro5.chr6             30722557 34 + 175400573 gactataggcatacaccaccacacccagctaatt-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31146188 34 + 173848474 gactataggcatacaccaccacacccagcaattt-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     653135 34 +   2037526 gactataggcatacaccaccacacccagctaatt-------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75320655 34 + 122973662 gactataggcatacactaccacacccggctaatt-------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31232056 34 + 172585720 aactataagcacacaccaccacacccggctaatt-------
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             30521071 34 - 170955103 aactataggcacacaccaccacacccggctaatt-------
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     818494 34 +   1495729 aactataagcacacaccaccacacccggctaatt-------
i macNem1.NW_012012100v1   C 0 I 1
s otoGar3.GL873550           682461 34 +  18854210 aataatagttgtagaataataTA-------AATTGGAAGAA
i otoGar3.GL873550         I 152 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1318260 4294 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     735511 1125 -   1829203 I
e manLeu1.NW_012106264v1      70581 8137 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e cerAty1.NW_012002513v1      41121 1016 -    811324 I

a score=956450.000000
s hg38.chr6_GL000254v2_alt  1876937 313 +   4827813 ttttttttt--------------------------tttttt-gagatggagtctcgctctgtcacccaggctggagtgcaatggcacgatctcagctcatggcaacctccgcctcctggattcaagcagttctcctgcctcagcctcctgagtagctgggactacaggcgcatgccaccacacccagctaattttcatac--ttttagaagagacagggtttcaccatgttggccaggctggtctcgaactc-ctgacctc--gtgatccacctgcctcagcctcccaaagtgctgggattacaggtgtgagccaccgcgcccagcctaatttttgta--ttttttg
s panTro5.chr6             30722591 314 + 175400573 ttttttttt--------------------------tttttttgagatggagtctcgctctgtcacccaggctggagtgcaatggcacaatctcagctcatggcaacctccgcctcctggattcaagcagttctcctgcctcagcctcctgagtagctgggactacaggcgcatgccaccacacccagctaattttcatac--ttttagaagagacagggtttcaccatgttggccaggctggtctcgaactc-ctgacctc--gtgatccacttgcctcagcctcccaaagtgctgggattacaggtgtgagccaccacgcccagcctaatttttgta--ttttttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31146222 340 + 173848474 tttttttttnnnnnnnnnnnnnnnnnnnnnatttatttttttgagatggagtctcgctctgtcacccaggctggagtgcaatggcacaatctcagctcatggcaacctccgcctcctggattcaagcagttctcctgcctcagcctcctgagtagctgggactacaggcgcatgccaccacacccagctaattttcatac--ttttagaagagacagggtttcaccatgttggccaggctggtctcgaactc-ctgacctc--gtgatccacttgcctcagcctcccaaagtgctgggattacaggtgtgagccaccgcgcccagcctaatttttgta--ttttttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     653169 314 +   2037526 ttttttttt--------------------------tttttttgagatggagtctcgctctgtcacccaggctggagtgcaatggcacgatctcagctcatggcaatctccgcctcctggattcaagcagtcctcctgcctcagcctcctgagtagctgggactacaggcgcatgccaccacacccagctaattttcatac--ttttagaagagacagggtttcaccatgttggccaggctggtctcgaactc-ctgacctc--gtgatccacctgcctcagcctcccaaagtgctgggattacaggtgtgagccactgcgcccggcctaatttttgta--ttttttg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75320689 317 + 122973662 ttttttttt-----------------------ttttttttttgagacggagtctcgctctgtcgcctaggctggagtgcaatggtacgatctcagctcatggcaacctccgcctcctggattcaagcaattctcctgcctcagcctcctgagtacctgggactacaggtgcatgccaccacacccagctaattttcgtac--ttttagaagagacaaggtttcaccatgttggacaggctggtctcgaactc-ctgacctc--gtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcctggcctaatttttgta--ttttttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31232091 317 + 172585720 -tctttttt--------------------------tttctttgagacggagtctcactctgtcgccccggctggagtgcagtagtgccatctcagctcatggcaacctccacctcccagattcaagcaattcttctgcctcagcctcctgagtagctgggactacaggcgcacaccaccacacccagctaattttcacatttttttagaagagacagggtttcaccatgttggccaggttggtctcaaactc-ctgacctc--gtgatccacctgccttggcctcccaaagtgctgttattataggcatgagccaccacaccaggcctaatttttgtattttttttg
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             30521106 317 - 170955103 -tctttttt--------------------------tttctttgagacggagtctcactctgtcgccccggctggagtgcagtggtgccatctcagctcatggcaacctccacctcccagattcaagcaattcttctgcctcagcctcctgagtagctgggactacaggcgcacgccaccacacccagctaattttcacatttttttagaagagacagggtttcaccatgttggccaggttggtctcaaactc-ctgacctc--gtgatccacctgccttggcctccctaagtgctgttattataggcatgagccaccacaccaggcctaatttttgtattttttttg
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     818529 317 +   1495729 -tctttttt--------------------------tttctttgagacggagtctcactctgtcgccccggctggagtgcagtagtgccatctcagctcatggcaacctccacctcccagattcaagcaattcttctgcctcagcctcctgagtagctgggactacaggcgcacgccaccacacccagctaattttcacatttttttagaagagacagggtttcaccatgttggccaggttggtctcaaactc-ctgacctc--gtgatccacctgccttggcctcccaaagggctgttattataggcatgagccaccacaccaggcctaatttttgtattttttttg
i macNem1.NW_012012100v1   I 1 C 0
s colAng1.NW_012115577v1     736636 316 -   1829203 -tttttttt--------------------------tttctttgagacggagtctcgctctgtcgcccgggctggagtgcagtggcgccatctcaactcatggcaacctccacctcccagattcaagcaattctcctgcctcagcctcctgagtagctgggactacaggcgcacgccaccacacccagctaattttcacacttttttagaaaagacggggtttcaccatgttggccaggttggtctcaaactc-ctgacctc--gtgatccacctgcctcggcctcccaaagtgctggtattataggcatgagccaccgcaccaggcctaatttttgta-tttttttg
i colAng1.NW_012115577v1   I 1125 C 0
s otoGar3.GL873550           682495 208 +  18854210 -tctttttt--------------------------tttttttgagacagagtctaaagccgttgccctgggtagagagcattggt---atcacagctca-----------------------------------ctatgtcaccct----------tgg---tagagtgccatggcgtcacagc----------tcacag---------------------------------------caacctcaaactctttggccttaagagattatcctgcctcagcctcccaagtagctgggactacaggcgccccacacaatgcccagc----------ta--ttttttg
i otoGar3.GL873550         C 0 I 102
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1318260 4294 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e manLeu1.NW_012106264v1      70581 8137 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e cerAty1.NW_012002513v1      41121 1016 -    811324 I

a score=352493.000000
s hg38.chr6_GL000254v2_alt  1877250 114 +   4827813 tagagatagggtttcaccatgttgcccaggctggtttccaatatctgggttcaagcaatctgcccgccttagcctcccaaagtgctgggattagagatgtgagccacggcaccc
s panTro5.chr6             30722905 114 + 175400573 tagagatagggtttcaccatgttgcccaggctggtttccaatatctgggttcaagcaatctgcccgcctcagcctcccaaagtgctgggattagaggtgtgagccacggcaccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31146562 114 + 173848474 tagagatagggtttcaccatgttgcccaggctggtttccaatatctgggttcaagcaatctgcccgcctcagcctcccaaagtgctgggattagaggtgtgagccacggcaccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     653483 114 +   2037526 tagagatagggtttcaccatgttgctcaggctggtttccaatatctgggttcaagcaatctgcccgtctcagcctcccaaagtgctgggattagaggtgtgagccacggcaccc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75321006 113 + 122973662 tagagatagggtttcaccatgttggccaggctggtttccaatatctgggctcaag-aatctgcccgcctcagcctcccaaagtgctgggattagaggtgtgagccaccacgccc
i nomLeu3.chr1a            C 0 I 796
s rheMac8.chr4             31232408 114 + 172585720 tagagatagggtttcgccatgttgcctaggctggttcccaatatctgagctgaagcaatctgcccaccttaccctcccaaagtgctgggattacaggtgtgagccacggcaccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30521423 114 - 170955103 tagagatagggtttcgccatgttgcccaggctggttcccaatatctgggctgaagcaatctgcccaccttaccctcccaaagtgctgggattacaggtgtgagccacggcaccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     818846 114 +   1495729 tagagatagggtttcgccatgttgcccaggctggttcccaatatctgggctgaagcaatctgcccaccttaccctcccaaagtgctgggattacaggtgtgagccacggcaccc
i macNem1.NW_012012100v1   C 0 C 0
s colAng1.NW_012115577v1     736952 114 -   1829203 tagagatagggtttcgccatgttgcccaggctggtttccagtatctgggctcaagcaatctgcccacctcaccctcccaaagtgctgggattacaggtgtgagccacggcaccc
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           682703 102 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1318260 4294 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e manLeu1.NW_012106264v1      70581 8137 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e cerAty1.NW_012002513v1      41121 1016 -    811324 I

a score=455038.000000
s hg38.chr6_GL000254v2_alt  1877364 198 +   4827813 acccaagaatgtttttttgaggcattatgtctactagtgaataatgggggggggggccgtggggggagtaccagaatagttaaagtaggctgtgtatatacaatgaaatatcacagtatcattttgtaaagatctatatgtattgacatgggaaaatgagcacatcataaataaataataaaagttgcagaacaataT
s panTro5.chr6             30723019 193 + 175400573 acccaagaat-tttttttgaggcattatgtctactagtgaataatgggggggg---ccgtggggggagtaccagaatagttaaagtaggctgtgtatatacaatgaa-tatcacagtatcattttgtaaagatctatatgttttgacatgggaaaatgagcatatcataaataaataataaaagttgcagaacaataT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31146676 195 + 173848474 ACCCAAGTAA-TTTTTTTGAGGCATTATGTCTACTAGTGAATAAGTGGGGGGG-GGCCGTGGGGGGAGTACCAGAATAGTTAAAGTAGGCTGTGTATATACAATGAA-TATCACAGTATCATTTTGTAAAGATCTATATGTATTGACATGGGAAAATGAGCATATCATAAATAAATAATAAAAGTTGCAGAACAATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     653597 194 +   2037526 ACCCAAGAATGTTTTTTTGAGGCATTATGTCTACTAGTGAATAATGGGGGGGG---CCGT-GGGGGAGTACCAGAATAGTTAAAGTAGGCTGTGTATATACAATGAAATACCACAGTATCATTTTGTAAAGATCTGTATGTATTGACATGGGAAAATGAGCACATCATAAATAAATAATAAAAGTTGCAGAACAATAT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31232522 194 + 172585720 ATCCAAGAAT-GTTTTTTGAGGCATTATGTCTACTAGTGAATAATGGGAGGGG---CCGTGGGGGGAGTACTAGAATAGTTAAAGTAGGCTGTGTATATACAAAGAAATATCACATTATCATTTTGTAAAGATCTATATGTATTGACATGGGAAAATAAGCACATCATAAATAAATAATAAAAGTTGTAGAACAATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30521537 194 - 170955103 atccaagaat-gttttttgaggcattatgtctactagtgaataatgggagggg---ccgtggggggagtactagaatagttaaagtaggctgtgtatatacaaagaaatatcacattatcattttgtaaagatctatatgtattgacatgggaaaataagcacatcgtaaataaataataaaagttgtagaaaaatat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     818960 194 +   1495729 ATCCAAGAAT-GTTTTTTGAGGCATTATGTCTACTAGTGAATAATGGGAGGGG---CCGTGGGGGGAGTACTAGAATAGTTAAAGTAGGCTGTGTATATACAAAGAAATATCACATTATCATTTTGTAAAGATCTATATGTATTGACATGGGAAAATAAGCACATCATAAATAAATAATAAAAGTTGTAGAACAATAT
i macNem1.NW_012012100v1   C 0 C 0
s colAng1.NW_012115577v1     737066 194 -   1829203 ATCCAAGAAT-GTTTTTTGAGACATTATGTCTACTAGTGAATAATGGGAGGGG---CCGTGGGGGGAGTACTAGAATAGTTAAAGTAGGCTGTGTATATACAAAGAAATATCACATTATCATTTTGTAAAGATCTATATGTATTGACATGGGAAAATAAGCACATCATAAATAAATAATAAAAGTTGTAGAACAATAT
i colAng1.NW_012115577v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           682703 102 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1318260 4294 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e manLeu1.NW_012106264v1      70581 8137 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e cerAty1.NW_012002513v1      41121 1016 -    811324 I
e nomLeu3.chr1a            75321119 796 + 122973662 I

a score=3236.000000
s hg38.chr6_GL000254v2_alt  1877562 3 +   4827813 AAA--
s panTro5.chr6             30723212 3 + 175400573 AAA--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31146871 3 + 173848474 AAA--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     653791 3 +   2037526 AAA--
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31232716 3 + 172585720 AAA--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30521731 3 - 170955103 aaa--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     819154 3 +   1495729 AAA--
i macNem1.NW_012012100v1   C 0 C 0
s colAng1.NW_012115577v1     737260 3 -   1829203 AAA--
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           682805 3 +  18854210 --gcc
i otoGar3.GL873550         I 102 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1318260 4294 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e manLeu1.NW_012106264v1      70581 8137 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e cerAty1.NW_012002513v1      41121 1016 -    811324 I
e nomLeu3.chr1a            75321119 796 + 122973662 I

a score=705105.000000
s hg38.chr6_GL000254v2_alt  1877565 225 +   4827813 CTGGAAGAAACA-TTTT--TTTCAATCTTCCCCTCCATCCATCTTTGCTGATATATAAACAGGAAAAAGT-TGGGGGAGAGAATACAGGAACACGG--AACAAACAGTAAACAATGGTTATCTCATAGA------CGTGATTGGCGG---------CAtttttggttttggttttctttttgagacggagtttcgctctctcacccaggctggagtgaagtggcacgtttttggctccctgcaacc
s panTro5.chr6             30723215 225 + 175400573 CTGGAAGAAACA-TTTT--TTTCAATCTTCCCCTCCATCCATCTTTGCTGATATATAAACAGGAAAAAGT-GGGGGGAGAGAATACAGGAACACGG--AACAAACAGTTAACAATGGTTATCTCATAGA------CGTGATTGGCGG---------CAtttttggttttggttttctttttgagacggagtttcgctctctcacccaggctggagtgaagtggcatgtttttggctccctgcaacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31146874 226 + 173848474 CTGGAAGAAACA-TTTT--TTTCAATCTTCCCCTCCATCCATCTTTGCTGATATATAAACAGGAAAAAGTGGGGGGGAGAGAATACAGGAACACCG--AACAAACAGTTAACAATGGTTATCTCATAGA------CGTGATTGGCGG---------CAtttttggttttggttttctttttgagacggagtttcgctctctcacccaggctggagtgaagtggcacgtttttggctccctgcaacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     653794 225 +   2037526 CTGGAAGAAACA-TTTT--TTTCAATCTTCCCCTCCATCCATCTTTGCTGATATATAAACAGGAAAAAGT-GGGGGGAGAGAATACAGGAACACGG--AACAAACAGTTAAGAATGGTTATCTCATAGA------CGTGATTGGAGG---------CAtttttggttttggttttctttttgagacggagtttcgctctctcacccaggctggagtgaagtggcacgtttttggctccctgcaacc
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31232719 223 + 172585720 CTGGAAGAAACA-TTTT--TTTCAATCTTCCCCTCCATCCATCTTTGCTGATGTATAAACAGGAAAAAGT-AGGGGGAGAGATTACAGGAATACGG--AACAAACAGTTAAC--TGGTTATGTCATGGA------TGTGATTGAGGG---------CAtttttggttttggttttctttttgagacggagttttgctctttcacccaggctggagtgaagtgtcacgtttttggctccctgcaacc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30521734 223 - 170955103 ctggaagaaaca-tttt--tttcaatcttcccctccatccatctttgctgatgtataaacaggaaaaagt-agggggagagattacaggaatacgg--aacaaacagttaac--tggttatctcatgga------tgTGATTGAGGG---------CAtttttggttttggttttctttttgagacggagttttgctctttcacccaggctggagtgaagtgtcacgtttttggctccctgcaacc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     819157 223 +   1495729 CTGGAAGAAACA-TTTT--TTTCAATCTTCCCCTCCATCCATCTTTGCTGATGTATAAACAGGAAAAAGT-AGGGGGAGAGATTACAGGAATACGG--AACAAACAGTTAAC--TGGTTATGTCATGGA------TGTGATTGAGGG---------CAtttttggttttggttttctttttgagacggagttttgctctttcacccaggctggagtgaagtgtcacgtttttggctccctgcaacc
i macNem1.NW_012012100v1   C 0 I 542
s colAng1.NW_012115577v1     737263 226 -   1829203 CTGAAAGAAACATTTTT--TTTCAATCTTCTCCTCCATCCCTCTTTGCTGATATATAAACAGGAAAAAGT-AGGGGGAGAGAATACAGGAATACAG--AACACATAGTTAACAATGGTTATCTCATGGA------TGTGATTGGGTG---------CAtttttggttttggttttctttttgagacggagtttcgctctttcacccaggctggagtgaagtgtcacgtttttggctccctgcaacc
i colAng1.NW_012115577v1   C 0 C 0
s cebCap1.NW_016107755v1    1322554 224 -   1771730 CTGGAAGAATCT-TTTT--TTTCTATCTTCCCCTCCATCCATCTTCACTGATATATAAAAAAGAAAAAGT---GGGGAGAGAATACAGGAATAAGGAAAAAAAACAGTTAACAATGGTTATCTC-TGGA------TGTGATTGGGGG---------CAtttttgtttttggttttctttttaaaatagagttttactctttcacccaggctggagtgaagtggcacagctttgacttactgcaccc
i cebCap1.NW_016107755v1   I 4294 C 0
s otoGar3.GL873550           682808 216 +  18854210 TTGGAAGAATCT-TTTTTATTCAAACCTCCCTTTCCACCCACCTTTGCTGATACCTAAACAGAAATAAAA-AGGAGGAGGAAATACAGA---------ATAAAACAGCTAACAATGGTGATATCATGGGGCATTTTGCTTTTGGGAGGGGTGttgtcttgttcttttttgtttgtttatttaagtcagggtctcaatatgttacccaggctgggctggag-------------------tacagcc
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e calJac3.chr4             30900681 8797 + 171630274 I
e manLeu1.NW_012106264v1      70581 8137 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e cerAty1.NW_012002513v1      41121 1016 -    811324 I
e nomLeu3.chr1a            75321119 796 + 122973662 I

a score=140009.000000
s hg38.chr6_GL000254v2_alt  1877790 51 +   4827813 tccg-ccccccaggttcaagcgattctcctgcctcagcctcctgagtagctg
s panTro5.chr6             30723440 51 + 175400573 tccg-ccccccaggttcaagcgattctcctgcctcagcctcctgagtagctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31147100 51 + 173848474 tccg-ccccccaggttcaagcgattctcctgcctcagcctcctgagtagctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     654019 50 +   2037526 tccg--cccccaggttcaagcgattctcctgcctcagcctcctgagtagctg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31232942 52 + 172585720 tccacccccccaggttcaagccattctcctgcctcagcctcctgagtagctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30521957 51 - 170955103 tcca-ccccccaggttcaagccattctcctgcctcagcctcctgagtagctg
i macFas5.chr4             C 0 C 0
s colAng1.NW_012115577v1     737489 51 -   1829203 tccg-ccccccaggttcaagcgattctcctgcctcagcctcctgagtagctg
i colAng1.NW_012115577v1   C 0 M 4711
s cebCap1.NW_016107755v1    1322778 52 -   1771730 tccagccccctgggttcaagcagttctcctgtctcagcctccagagtagctg
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           683024 50 +  18854210 tcca-gcttctgggttcaagcaatcctcccacctcagcctcc-aagtacctg
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e calJac3.chr4             30900681 8797 + 171630274 I
e manLeu1.NW_012106264v1      70581 8137 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e cerAty1.NW_012002513v1      41121 1016 -    811324 I
e macNem1.NW_012012100v1     819380 542 +   1495729 I
e nomLeu3.chr1a            75321119 796 + 122973662 I

a score=12092.000000
s hg38.chr6_GL000254v2_alt  1877841 6 +   4827813 ggatta
s panTro5.chr6             30723491 6 + 175400573 ggatta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31147151 6 + 173848474 ggatta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     654069 6 +   2037526 ggatta
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31232994 6 + 172585720 agatta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30522008 6 - 170955103 agatta
i macFas5.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1322830 6 -   1771730 ggatta
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           683074 6 +  18854210 agacca
i otoGar3.GL873550         C 0 I 7340
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     737540 4711 -   1829203 M
e manLeu1.NW_012106264v1      70581 8137 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e cerAty1.NW_012002513v1      41121 1016 -    811324 I
e macNem1.NW_012012100v1     819380 542 +   1495729 I
e nomLeu3.chr1a            75321119 796 + 122973662 I

a score=166307.000000
s hg38.chr6_GL000254v2_alt  1877847 109 +   4827813 taggcacctgccaccatgcccggctaatttttgtg-----tgtgtgtgtttttttcagtagagacggagtttcactatgttggccaggctggtcttgaactcctgacctcaggt
s panTro5.chr6             30723497 109 + 175400573 taggcacctgccaccatgcccggctaatttttgtg-----tgtgtgtgtttttttcagtagagacggagtttcactatgttggccaggctggtcttgaactcctgacctcaggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31147157 109 + 173848474 taggcacctgccaccatgcccggctaatttttgtg-----tgtgtgtttttttttcagtagagacggagtttcactatgttggccaggctggtcttgaactcctgacctcaggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     654075 107 +   2037526 taggcacctgccaccatgcccggctaatttt--tg-----tgtgtgtttttttttcagtagagacggagtttcactatgttggccaggctagtcttgaacacctgacctcaggt
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31233000  98 + 172585720 taggcacctgccaccgcacctggctaa-ttt---------------ttttttttttagtagagatggggtttcactatgttggccaggctggtcttgaactcctgacctcaggt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30522014  99 - 170955103 taggcacctgccaccgcacccagctaatttt---------------ttttttttttagtagagatggggtttcactatgttggccaggctggtcttgaactcctgacctcaggt
i macFas5.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1322836 114 -   1771730 taggcgtccaccaccacacccagccaatttttgtgttttttgtttgtttgtttttcagtagagacagggtttcaccatgttggcctggctggtcttgaactcctgacctcaggt
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     737540 4711 -   1829203 M
e manLeu1.NW_012106264v1      70581 8137 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e cerAty1.NW_012002513v1      41121 1016 -    811324 I
e macNem1.NW_012012100v1     819380 542 +   1495729 I
e nomLeu3.chr1a            75321119 796 + 122973662 I

a score=262016.000000
s hg38.chr6_GL000254v2_alt  1877956 114 +   4827813 gatctgcccgcctcggcctcccaaagtgctacgattacgggcatgagccactgcaccctgccATAGAGGGCATTTTTGCTTTCTGAGttagtcagggttctccagagaaataga
s panTro5.chr6             30723606 114 + 175400573 gatctgcccgcctcggcctcccaaagtgctacgattacgggcatgagccactgcaccctgccATAGAGGGCATTTTTGCTTTCTGAGttagtcagggttctccagagaaataga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31147266 114 + 173848474 gatctgcccgcctcggcctcccaaagtgctacgattacgggcatgagccagtgcaccctgccATAGAGGGCATTTTTGCTTTCTGAGttagtcagggttctccagagaaataga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     654182 114 +   2037526 gatctgcccgcctcggcctcccaaagtgctacgattacgggcatgagccactgcaccctgccATAGAGGGCATTTTTGCTTTCTGAGttagtcagggttctccagagaaataga
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31233098 114 + 172585720 gatccgcctgcctcatcctcccaaaatgctaggattacaggcatgagccactgcacccTGGCATAGAGGGCATTTTTGCTTTCTGAGttagtcagggttctctagagaaataga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30522113 114 - 170955103 gatccgcctgcctcatcctcccaaaatgctaggattacaggcatgagccactgcacccTGGCATAGAGGGCATTTTTGCTTTCTGAGttagtcagggttctctagagaaataga
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      42137 114 -    811324 gatccgcctgcctcatcctcccaaaatgctaggattacaggcatgagccactgcaccctgccATAGAGGGCATTTTTGCTTTCTGAGttagtcagggttctctagagaaataga
i cerAty1.NW_012002513v1   I 1016 C 0
s cebCap1.NW_016107755v1    1322950 110 -   1771730 gatccacccacctaagcctcccaaaatgctaggatcacaggtgtgagccactgcactccgccATAGAGGGCATTTTTGATTTGTGaatt----agggttctccagagaaatgta
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     737540 4711 -   1829203 M
e manLeu1.NW_012106264v1      70581 8137 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e macNem1.NW_012012100v1     819380 542 +   1495729 I
e nomLeu3.chr1a            75321119 796 + 122973662 I

a score=6683.000000
s hg38.chr6_GL000254v2_alt  1878070 3 +   4827813 ata
s panTro5.chr6             30723720 3 + 175400573 ata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31147380 3 + 173848474 ata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     654296 3 +   2037526 ata
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75321915 3 + 122973662 ata
i nomLeu3.chr1a            I 796 C 0
s rheMac8.chr4             31233212 3 + 172585720 atg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30522227 3 - 170955103 atg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      42251 3 -    811324 acg
i cerAty1.NW_012002513v1   C 0 C 0
s cebCap1.NW_016107755v1    1323060 3 -   1771730 ata
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     737540 4711 -   1829203 M
e manLeu1.NW_012106264v1      70581 8137 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e macNem1.NW_012012100v1     819380 542 +   1495729 I

a score=481196.000000
s hg38.chr6_GL000254v2_alt  1878073 145 +   4827813 tacatacatacgtacatacatacatac----------------------------------ttgcagagagagaaagagagagtgtgacttattttaaggaattagttcacaaaattgtggaggcttggtgagtccaaagtctgataggagagcccagcaggctggagacacaggaaag
s panTro5.chr6             30723723 149 + 175400573 tacatacatacatacatacatacatac------------------------------atacttgcagagagagaaagagagagtgtgacttattttaaggaattagttcacaaaattgtggaggcttggtgagtccaaagtctgataggagagcccagcaggctggagacacaggaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31147383 149 + 173848474 tacatacatacatacatacatacatac------------------------------atacttgcagagagagaaagagagagtgtgacttattttaaggaattagttcacaaaattgtggaggcttggtgagtccaaagtctgataggagagcccagcaggctggagacacaggaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     654299 179 +   2037526 tacatacatacatacatgcatacatacatacatacatacatacatgcatacatcaacatacttgcagagagagaaagagagagtgtgacttattttaaggaattagttcacaaaattgtggaggcttggtgagtccaaagtctgataggagagcccagcaggctggagacacaggaaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75321918 145 + 122973662 tacatacatacatacatacatatatac----------------------------------TTGCAGGGAGAGAAagagagagtgtgacttattttaaggaattagctcacaaaactgtggaggcttggtgagtccaaagtctgatagaagagcccagcaggctggagacacaggaaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31233215 135 + 172585720 --------tacatacatacatacatac----------------------------------ttgcagagagcgaaagagagagtatgatttatcttaaggaattggctcacaaaattgtggaggcttgatgaatccaaagtctgataggagagcccagtaggctggag--acaggaaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30522230 135 - 170955103 --------tacatacatacatacatac----------------------------------ttgcagagagcgaaagagagagtatgatttatcttaaggaactggctcacaaaattgtggaggcttgatgaatccaaagtctgataggagagcccagtaggctggag--acaggaaac
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      42254 135 -    811324 --------tacatacatacatacatac----------------------------------ttgcagagagcgaaagagagagtatgatttatcttaaggaattggctcacaaaattgtggaggcttgatgaatccaaagtctgataggagagcccagtaggctggag--acaggaaac
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1      78718 143 +    779361 tacatacatacatacatacatacatac----------------------------------TTGCAGAGAGCGAAagagagagtatgatttatcttaaggaattggctcacaaaattgtggaggcttgatgagtccaaagtctgataggagagcccagtaggctggag--acaggaaac
i manLeu1.NW_012106264v1   I 8137 C 0
s cebCap1.NW_016107755v1    1323063 125 -   1771730 ------------tacatacatacatac----------------------------------ttgcag--------agagagtgtgtgatttatttttagaaattggctcacaaaattttggaggattggtgagtccaaagtctgataggagagcccgacaggccggagacataggaaag
i cebCap1.NW_016107755v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     737540 4711 -   1829203 M
e chlSab2.chr17            30074781 2720 -  71996105 I
e macNem1.NW_012012100v1     819380 542 +   1495729 I

a score=347300.000000
s hg38.chr6_GL000254v2_alt  1878218 76 +   4827813 agttgcagttcaagtccaaaggtggtgtgctggaaac-ttctgaccagaacaaaagagagaggacagccttttgttc
s panTro5.chr6             30723872 76 + 175400573 agttgcagttcaagtccaaaggtggtgtgctggaaaa-ttctgaccagaacaaaagagagaggacagccttttgttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31147532 76 + 173848474 agttgcagttcaagtccaaaggtggtgtgctggaaaa-ttctgaccagaacaaaagagagaggacagccttttgttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     654478 76 +   2037526 agttgcagttcaagtccaaaggtggtgtgctggaaaa-ttctgaccagaacaaaagagagaggacagccttttgttc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75322063 76 + 122973662 agttgcagttcaagtccaaaggtggtgtgctggaaaa-ttctgaccagaacaaaagagagaggacagccttttgttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31233350 76 + 172585720 agttgcagttcaagtccaaaggtggtgttccggaaaa-ttctgatcagaacaaaagagagagggcagccttttgttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30522365 76 - 170955103 agttgcagttcaagtccaaaggtggtgttccggaaaa-ttctgatcagaacaaaagagagagggcagccttttgttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     819922 76 +   1495729 agttgcagttcaagtccaaaggtggtgttccgggaaatttctgatcagaacaaaagagagagggcag-cttttgttc
i macNem1.NW_012012100v1   I 542 C 0
s cerAty1.NW_012002513v1      42389 76 -    811324 agttgcagttcaagtccaaaggtggtgttccggaaaa-ttctgatcagaacaaaagagagagggcagccttttgttc
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1      78861 76 +    779361 agttgcagttcaagtccaaaggtggtgttccggaaaa-ttctgatcagaacaaaagagagagggcagctttttgttc
i manLeu1.NW_012106264v1   C 0 C 0
s cebCap1.NW_016107755v1    1323188 74 -   1771730 aattgaagttcaagtccaaagatggtgcactgaaaaa-ttctgacgagaacaaaagggaga--acagccttttgttc
i cebCap1.NW_016107755v1   C 0 I 5754
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     737540 4711 -   1829203 M
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=926289.000000
s hg38.chr6_GL000254v2_alt  1878294 251 +   4827813 taacc-aggtcttcaact-gattggatgaagcccaccctcattacatttaaagttcaccaatttaaatgtaaatctcatccaaaaacaccttcacagaaacatccagaat-aatgtttgactaaatatctggacac-catggc-ccagacaagttgacacataaaattaaacatcGT-AATGAGATCTG-CTGCTATCTAT-GAATTTAT-GTTTCTAGTGTATTTG-TAAGGTACATGGATCATTCCTTTATTTCTCTCT
s panTro5.chr6             30723948 251 + 175400573 taacc-aggtcttcaact-gattggatgaagcccaccctcattatatttaaagttcaccaatttaaatgtaaatctcatccaaaaacaccttcacagaaacatccagaat-aatgtttgactaaatatctggacac-catggc-ccagacaagttgacacataaaattaaacatcat-aATGAGATCTG-CTGCTATCTAT-GAATTTAT-GTTTCTAGTGTATTTG-TAAGGTACATGGATCATTCCTTTATTTCTCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31147608 251 + 173848474 taacc-aggtcttcaact-gattggatgaagcccaccctcattatatttaaagttcatcaatttaaatgtaaatctcatccaaaaacaccttcacagaaacatccagaat-aatgtttgactaaatatctggacac-catggc-ccagacaagttgacacataaaattaaacatcGT-AATGAGATCTG-CTGCTATCTAT-GAATTTAT-GTTTCTAGTGTATTTG-TAAGGTACATGGATCATTCCTTTATTTCTCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     654554 251 +   2037526 taacc-aggtcttcaact-gattggatgaagcccaccctcattacatttaaagttcaccaatttaaatgtaaatctcatccaaaaacaccttcacagaaacatccagaat-aatgtttgactaaatatctggacac-catggc-ccagacaagttgacacataaaattaaacatcat-aATGAGATCTG-CTGCTATCTAT-GAATTTAT-GTTTCTAGTGTATTTG-TAAGGTACATGGATCATTCCTTTATTTCTCTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75322139 247 + 122973662 taatc-aggccttcaact-gattggatgaagcccaccttcattacatttgaagttcaccaatttaaatgtaaatctcatccaaaaacaccttcataaaaacatccagaat-aatgtttgactaaatatctggacac-catggc-ccagacaagttgacatataaaattaaATATTGT-AATGAGATCTG-CTG----CTAT-GAATTTAT-GTTTCTAGTGTCTTTA-TAAGGTACCTGGATCATTCCTTTATTTCTCTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31233426 249 + 172585720 taatc-aggccttcaact-gattggatgaagctcaccctcgttacatttaaagttcaccaatttaaatgtaaatctcatccaaaaacaccctcatagaaacatccagaat-aatgtttgactaaatatctggacac-catggc-ccagacaagttgacac--aaaattaaacatcac-aATGAGATCTG-CTGCTATCTAT-GAATTTAT-GTTTCTAGTGTCTTTG-TAAGGTACATGGATCGTTCCTTTATTTCTCTCt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30522441 249 - 170955103 taatc-aggccttcaact-gattggatgaagctcaccctcattacatttaaagttcaccaatttaaatgtaaatctcatccaaaaacaccctcatagaaacatccagaat-aatgtttgactaaatatctggacac-catggc-ccagacaagttgacac--aaaattaaacatcac-aATGAGATCTG-CTGCTATCTAT-GAATTTAT-GTTTCTAGTGTCTTTG-TAAGGTACATGGATCGTTCCTTTATTTCTCTCt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     819998 257 +   1495729 taatcaaggccttcaactggattggatgaagctcaccctcattacatttaaagttcaccca-ataaatgtaaatctcatccaaaaacacccctctagaaacatccagaataaatgtttgac-aaatatctggacacatgtggctccagacaagttgacac--aaaattaaacatcacaAATGAGATCTGACTGCTATCTATGGAATTTATGGTTTCTTAGGTCTTTGTTAAGGTACATTGATCATTCCTTTATTTCTCTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      42465 251 -    811324 taatc-aggccttcaact-gattggatgaagctcaccctcatgacatttaaagttcaccaatttaaatgtaaatctcatccaaaaacaccctcatagaaacatccagaat-aatgtttgactaaatatctggacac-catggc-ccagacaagttgacacataaaattaaacatcat-aATGAGATCTG-CTGCTATCTAT-GAGTTTAT-GTTTCTAGTGTCTTTG-TAAGGTACATGGATCGTTCCTTTATTTCTCTCt
i cerAty1.NW_012002513v1   C 0 I 281
s manLeu1.NW_012106264v1      78937 251 +    779361 taatc-aggccttcaact-gattggatgaagctcaccctcatgacatttaaagttcaccaatttaaatgtaaatctcatccaaaaacaccctcatagaaacatccagaat-aatgtttgactaaatatctggacac-cgtggc-ccagacaagttgacacataaaattaaacatcat-aATGAGATCTG-CTGCTATCTAT-GAATTTAT-GTTTCTAGTGTCTTTG-TAAGGTACATGGATTGTTCCTTTATTTCTCTCT
i manLeu1.NW_012106264v1   C 0 T 2022
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     737540 4711 -   1829203 M
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=1174.000000
s hg38.chr6_GL000254v2_alt  1878545 9 +   4827813 Ctatatata--
s panTro5.chr6             30724199 9 + 175400573 Ctatatata--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31147859 9 + 173848474 Ctatatata--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     654805 9 +   2037526 Ctatatata--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75322386 7 + 122973662 C--tatata--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31233675 9 + 172585720 --atatgtata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30522690 1 - 170955103 --a--------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     820255 9 +   1495729 --ATATGTATA
i macNem1.NW_012012100v1   C 0 I 310
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     737540 4711 -   1829203 M
e manLeu1.NW_012106264v1      79188 2022 +    779361 T
e chlSab2.chr17            30074781 2720 -  71996105 I
e cerAty1.NW_012002513v1      42716 281 -    811324 I

a score=3822.000000
s hg38.chr6_GL000254v2_alt  1878554 2 +   4827813 ta
s panTro5.chr6             30724208 2 + 175400573 ta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31147868 2 + 173848474 ta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     654814 2 +   2037526 ta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75322393 2 + 122973662 ta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31233684 2 + 172585720 ta
i rheMac8.chr4             C 0 I 269
s macFas5.chr4             30522691 2 - 170955103 ta
i macFas5.chr4             C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     737540 4711 -   1829203 M
e manLeu1.NW_012106264v1      79188 2022 +    779361 T
e chlSab2.chr17            30074781 2720 -  71996105 I
e cerAty1.NW_012002513v1      42716 281 -    811324 I
e macNem1.NW_012012100v1     820264 310 +   1495729 I

a score=13247.000000
s hg38.chr6_GL000254v2_alt  1878556 13 +   4827813 gatatatatatac
s panTro5.chr6             30724210 13 + 175400573 gatatatatatac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31147870 11 + 173848474 g--atatatatac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     654816 13 +   2037526 gatatatatatac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75322395 13 + 122973662 gatatatatatac
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30522693 13 - 170955103 tgtatatatatac
i macFas5.chr4             C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     737540 4711 -   1829203 M
e manLeu1.NW_012106264v1      79188 2022 +    779361 T
e chlSab2.chr17            30074781 2720 -  71996105 I
e cerAty1.NW_012002513v1      42716 281 -    811324 I
e macNem1.NW_012012100v1     820264 310 +   1495729 I
e rheMac8.chr4             31233686 269 + 172585720 I

a score=16380.000000
s hg38.chr6_GL000254v2_alt  1878569 5 +   4827813 ttttt
s panTro5.chr6             30724223 5 + 175400573 ttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31147881 5 + 173848474 ttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     654829 5 +   2037526 ttttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75322408 5 + 122973662 ttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31233955 5 + 172585720 ttttt
i rheMac8.chr4             I 269 C 0
s macFas5.chr4             30522706 5 - 170955103 ttttt
i macFas5.chr4             C 0 I 264
s cerAty1.NW_012002513v1      42997 5 -    811324 ttttt
i cerAty1.NW_012002513v1   I 281 C 0
s manLeu1.NW_012106264v1      77166 5 +    779361 ttttt
i manLeu1.NW_012106264v1   T 2022 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     737540 4711 -   1829203 M
e chlSab2.chr17            30074781 2720 -  71996105 I
e macNem1.NW_012012100v1     820264 310 +   1495729 I

a score=76438.000000
s hg38.chr6_GL000254v2_alt  1878574 25 +   4827813 ataatcataaatatgtgtatgcatg
s panTro5.chr6             30724228 25 + 175400573 ataatcataaatatgtgtatgcatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31147886 25 + 173848474 ataatcataaatatgtgtatgcatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     654834 25 +   2037526 ataatcataaatatgtgtatgcatg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75322413 25 + 122973662 ataatcataaagatgtgtatgcatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31233960 25 + 172585720 ataatcataaaaatgtgtatacatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30522975 25 - 170955103 ataatcataaaaatgtgtatacatg
i macFas5.chr4             I 264 C 0
s cerAty1.NW_012002513v1      43002 25 -    811324 ataatcataaaaatgtgtatacatg
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1      77171 25 +    779361 ataatcataaaaatgtgtatacatg
i manLeu1.NW_012106264v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     737540 4711 -   1829203 M
e chlSab2.chr17            30074781 2720 -  71996105 I
e macNem1.NW_012012100v1     820264 310 +   1495729 I

a score=574060.000000
s hg38.chr6_GL000254v2_alt  1878599 143 +   4827813 catatgtatgtataagaaaatatatatacatatagacataAAATTATGCATTTGTGCTAGGTACTtgtgatggttaattttatttgtcaacttggctaagccatggtattcagatatttggtcaaacattgtggatggttttg
s panTro5.chr6             30724253 143 + 175400573 catatgtatgtataagaaaatatatatacatatagacataAAATTATGCATTTGTGCTAGGTACTtgtgatggttaattttatttgtcaacttggctaagccatggtattcagatatttggtcaaacattgtggatggttttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31147911 143 + 173848474 catatgtatgtataagaaaatatatatacatatagacataAAATTATGCATTTGTGCTAGGTACTtgtgatggttaattttatttgtcaacttggctaagccatggtattcagatatttggtcaaacattgtggatggttttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     654859 143 +   2037526 catatgtatgtataagaaaatatatatacatatagacataAAATTATGCATTTGTGCTAGGTACTtgtgatggttaattttatttgtcaacttggctaagccatggtattcagatatttggtcaaacattgtggatggttttg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75322438 143 + 122973662 catatgtatgtataagaaaatatatatacatatagacataatattatGCATTTGTGCTAGGTACTtgtgatggttaattttatttgtcaacttggctaagccatggtattcagatatttggtcaaacattatggatggttttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31233985 143 + 172585720 cacatgtatgtacaagaaaatatatatgcatatagatataAAATTATGCATTTGTGCTAGGTACTtgtgatggttaattttatgtgtcaacttggctaagccatggtattcagatatttggtcaaatgttatggatggttttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30523000 143 - 170955103 cacatgtatgtacaagaaaatatatatgcatatagatataAAATTATGCATTTGTGCTAGGTACTtgtgatggttaattttatgtgtcaacttggctaagccatggtattcagatatttggtcaaatgtgatggatggttttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     820574 143 +   1495729 catatgtatgtataagaaaatatatatgcatatagatataAAATTATGCATTTGTGCTAGGTACTtgtgatggttaattttatgtgtcaacttggctaagccatggtattcagatatttggtcaaatgttatggatggttttg
i macNem1.NW_012012100v1   I 310 C 0
s cerAty1.NW_012002513v1      43027 143 -    811324 catatgtatgtataagaaaatatatatgcatatagatataAAATTATGCATTTGTGCTAGGTACTtgtgatggttaattttatgtgtcaacttggctaagccatggtattcagatatttggtcaaatgttatggatggttttg
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1      77196 143 +    779361 catatgtatgtataagaaaatatatatacatatagatataAAATTATGCATTTGTGCTAGGTACTtgtgatggttaattttatgtgtcaacttggctaagccatggtattcagatatttggtcaaatgttatggatggttttg
i manLeu1.NW_012106264v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     737540 4711 -   1829203 M
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=4063617.000000
s hg38.chr6_GL000254v2_alt  1878742 839 +   4827813 tgagggtattttggatgtttcaaattggtgcattttgaataaagcagactgccctccacaatgtgagtgggcctcatccaatcattcaaaggcctaagacaaaaagactgaggtccctgaggaagagggaattctgcctccacaccgcctttggacctgagctgtaacatcaactctttgctgctggcctgcctgctctgcagattttggatttgccaacccctatgatagcatgaaacagttctttcatctgattggttctaactctctggaacaccctaactaatacaGTGCTGTTATAGGTACTGAGAATAGAGTGATCAACAGGGAAGAAAACGTGCTGTCTTGGGGCCTTGCTGGCGGGTGGATGGTAGACACTCAATTGTGTGAGGCTCATTGGCCATAGAGGAACTCATGCAGgagaaactcaccttgcctaggttgaaaggaggggaatcaggcacatattcccctctgaggaatatgtcagcagagactggatgtggcaagactacaggtggcgggtaggtgggacagagtattccagaccagggaacaaaaagggataaaagtcttggggtggaaaggacatgtttgagaaacagaaataagaccaggtgctgggaccaggagtCCTACACTCATCACACTCAGTTACTCATGGGGTGACTTCAGAAGCCCTAAAAGATTTTGTTTCCCAAttttttttttttt---------ttgacaagatcttgctctgttgcccaggctagagtgcagtggcacgatcatagctcacagcagcctcaatctctcgggctcaagtgatccacccacctcagcctcctgagtagctgggactacag
s panTro5.chr6             30724396 839 + 175400573 tgagggtattttggatgtttcaaattggtgcattttgaataaagcagactgccctccacaatgtgagtgggcctcatccaatcattcaaaggcctaagacaaaaagactgaggtccctgaggaagagggaattctgcctccacaccgcctttggacctgagctgtaacgtcaactctttgctgctggcctgcctgctctgcagattttggatttgccgaccccaatgatagcatgaaacagttctttcatccgattggttctaactctctggaacaccctgactaatacaGTGCTGTTATAGGTACTGAGAATAGAGTGATCAACAGGGAAGAAAACGTGCTGTCTTGGGGCCTTGCTGGCGGGTGGATGGTAGACACTCAATTGTGTGAGGCTCATTGGCCATAGAGGAACTCATGCAGgagaaactcaccttgcctaggttgaaaggaggggaatcaggcacatattcccctctgaggaatatgtcagcagagactggatgtggcaagactacaggtggcaggtaggtgagacagagtattccagaccagggaacaaaaagggataaaagtcttggggtagaaaggacatgtttgagaaacagaaataagaccaggtgctgggaccaggagtCCTACACTCATCACACTCAGTTACTCATGGGGTGACTTCAGAAGCCCTAAAAGTTTTTGTTTCCCAAttttttttttttt---------ttgacaagatcttgctctgttgcccaggctagagtgcagtggcacgatcatagctcacagcagcctcaatctctcgggctcaagcgatccacccacctcagcctcctgagtagctgggactacag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31148054 838 + 173848474 tgagggtattttggatgtttcaaattggtgcattttgaataaagcagactgccctccacaatgtgagtgggcctcatccaatcattcaaaggcctaagacaaaaagactgaggtccctgaggaagagggaattctgcctccacaccgcctttggacctgagctgtaacgtcaactctttgctgctggcctgcctgctctgcagattttggatttgccgaccccaatgatagcatgaaacagttctttcatccgattggttctaactctctggaacaccctgactaatacaGTGCTGTTATAGGTACTGAGAATAGAGTGATCAACAGGGAAGAAAACGTGCTGTCTTGGGGCCTTGCTGGCGGGTGGATGGTAGACACTCAATTGTGTGAGGCTCATTGGCCATAGAGGAACTCATGCAGgagaaactcaccttgcctaggttgaaaggaggggaatcaggcacatattcccctctgaggaatatgtcagcagagactggatgtggcaagactacaggtggcgggtaggtgggacagagtattccagaccagggaacaaaaagggataaaagtcttggggtggaaaggacatgtttgagaaacagaaataagaccaggtgctgggaccaggagtCCTACACTCATCACACTCAGTTACTCATGGGGTGACTTCAGAAGCCCTAAAAGTTTTTGTTTCCCAA-tttttttttttt---------ttgacaagatcttgctctgttgcccaggctagagtgcagtggcacgatcatagctcacagcagcctcaatctctcgggctcaagcgatccacccacctcagcctcctgagtagctgggactacag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     655002 838 +   2037526 tgaggttattttggatgtttcaaattggtgcattttgaataaagcagactgccctccacaatgtgagtgggcctcatccaatcattcaaaggcctaagacaaaaagactgaggtccctgaggaagagggaattctgcctccacaccgcctttggacctgagctgtaacatcaactctttgctgctggcctgcctgctctgcagattttggatttgccgaccccaatgatagcatgaaacagttctttcatccgattggttctaactctctggaacaccctgactaatacaGTGCTGTTATAGGTACTGAGAATAGAGTGATCAACAGGGAAGAAAGCGTGCTGTCTTGGGGCCTTGCTGGCGGGTGGATGGTAGACACTCAATTGTGTGAGGCTCATTGGCCATAGAGGAACTCATGCAGgagaaactcaccttgcctaggttgaaaggaggggaatcaggcacatattcccatctgaggaatatgtcagcagagactggatgtggcaagactacaggtggcgggtaggtgggacagagtattccagaccagggaacaaaaagggataaaagtcttggggtggaaaggacatgtttgagaaacagaaataagaccaggtgctgggaccaggagtCCTACACTCATCACACTCAGTTACTCATGGGGTGACTTCAGAAGCCCTAAAAGtttttgtttccctt-tttttttttttt---------ttgacaagatcttgctctgttgcccaggctagagtgcagtggcacgatcatagctcacagcagcctcaatctctcgggctcaagtgatccacccacctcagcctcctaagtagctgggactacag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75322581 836 + 122973662 tgagggtgttttggatgattcaaactggtgcattttgagtaaagcagactgccctccacaatgtgggtgggcctcatccaatcattcaaaggcctaagacaaaaagactgaggtccctgaggaagagggaattctgcctccacactgcctttggacctgagctgcaacatcaactctttgctgctggcctgcctgctctgcagattttggatttgccggccccaatgatagcatgaaatagttctttcatctgattggttctaactctctggaacaccctgactaatacaGTGCTGTTACAGGTACTGAGAATAGAGTGATCAACAGGGAAGAAAACGTGCTGTCTTGGGGCCTTGCTGGCAGGTGGTTGGTAGACATTCAATTGTGTGAGGCTCATTGGCCACAGAGGAACTCATGcagaagaaactcaccttgcctaggttgaaagaaggggaatcaggcacatattcccctctgaggaatatgtcagcagagactggatgtggcaagactacaggtggccagtaggtgggatagagtattccagaccagggaacaaaaagggataaaagtcttggggtggaaaggacatgtttgagaaacagaaataagaccaggtgctgggaccaggagtCCTACACTCATCACACTCAGTCACTCATGGGGTGACTTCAGAAGCCCCAGAAGTTTTTGTTTCCCAA---tttttttttt---------ttgacaagatcttgctctgttgcccaggctagagtgcagtggcacgatcatagctcacagcagcctcaatctctcgggctcaagcaatccacccacctcagcgtcctgagtagctgggactacag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31234128 847 + 172585720 tgaggatgttttgaatgattcaaattggtgcattttgagtgaagcagactgccctccacattgtgggtgggcctcatccaatcattcaaaggcctgagacaaaaacactgaggtccctgaag-agagggaattctgcctccacaccgcctttggacctgagctgcaacatcaactctttgctgctggcctatctgctctgcagattgtggatttgccggccccagtgatagcatgaaacagttctttcatcctattggttctaactctctggagcaccctgactaatacaACGCTGTTACAGGTACTGAGAATAGAGTGATCAACAGGGAAGAAAACATGCTGTCTCGGGGCCTTGCTGGTGGGTGGATGGTAGACACTCAATTGTATGAGGCTCATTGGCCATAGAGGAACTCATGCAAGAGAAACTCACCTTGCCTGGGTTGAAAGGAggggaatcaggcacatattcccctctgaggaatatgtcagcagagactggatgtggcaagactacaggtggctggtaggtgggatagagtattccagaccagggaacaaaaagggataaaagtcttccggtggaaaggacatgtttgagaagcagaaacaagaccaggtgctgggaccagaAGTCCTACACTCATCACACTCAGTTTCTCATGGGGTGACTTCAGAAGTCCTAGAAttttttgtttcccaatttttttatttttattttctggtagacaagatctcactctgttgcccaggctagagtgcagtggcacgatcgtagctcacagcaacctcgatctctcgggctcaagcgatccacccacctcagcctcccgagtagctgggactatag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30523143 847 - 170955103 tgaggatgttttgaatgattcaaattggtgcattttgagtgaagcagactgccctccacattgtgggtgggcctcatccaatcattcaaaggcctgagacaaaaacactgaggtccctgaag-agagggaattctgcctccacaccgcctttggacctgagctgcaacatcaactctttgctgctggcctatctgctctgcagattgtggatttgccggccccagtgatagcatgaaacagttctttcatcctattggttctaactctctggagcaccctgactaatacaACGCTGTTACAGGTACTGAGAATAGAGTGATCAACAGGGAAGAAAACATGCTGTCTCGGGGCCTTGCTGGTGGGTGGATGGTAGACACTTAATTGTATGAGGCTCATTGGCCATAGAGGAACTCATGCAAGAGAAACTCACCTTGCCTGGGTTGAAAGGAggggaatcaggcacatattcccctctgaggaatatgtcagcagagactggatgtggcaagactacaggtggccggtaggtgggatagagtattccagaccagggaacaaaaagggataaaagtcttccggtggaaaggacatgtttgagaagcagaaacaagaccaggtgctgggaccagaAGTCCTACACTCATCACACTCAGTTTCTCATGGGGTGACTTCAGAAGTCCTAGAAttttttgtttcccaatttttttatttttattttctggtagacaagatctcactctgttgcccaggctagagtgcagtggcacgatcgtagctcacagcaacctcaatctctcgggctcaagcgatccacccacctcagcctcccgagtagctgggactatag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     820717 847 +   1495729 tgaggatgttttgaatgattcaaattggtgcattttgagtgaagcagactgccctccacattgtgggtgggcctcatccaatcattcaaaggcctgagacaaaaacactgaggtccctgaag-agagggaattctgcctccacaccgcctttggacctgagctgcaatatcaactctttgctgctggcctatctgctctgcagattgtggatttgccggccccagtgatagcattaaacagttctttcatcctattggttctaactctctggagcaccctgactaatacaACGCTGTTACAGGTACTGAGAATAGAGTGATCAACAGGGAAGAAAACATGCTGTCTCGGGGCCTTGCTGGTGGGTGGATGGTAGACACTCAATTGTATGAGGCTCATTGGCCATAGAGGAACTCATGCAAGAGAAACTCACCTTGCCTGGGTTGAAAGGAggggaatcaggcacatattcccctctgaggaatatgtcagcagagactggatgtggcaagactacaggtggccggtaggtgggatagagtattccagaccagggaacaaaaagggataaaagtcttccggtggaaaggacatgtttgagaagcagaaacaagaccaggtgctgggaccaggagtCCTACACTCATCACACTCAGTTTCTCATGGGGTGACTTCAGAAGTCCTAGAAttttttgtttcccaatttttttatttttattttctggtagacaagatctcactctgttgcccaggctagagtgcagtggcacgatcgtagctcacagcaacctcgatctctcgggctcaagcgatccacccacctcagcctcccgagtagctgggactatag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      43170 847 -    811324 tgaggatgttttgaatgattcaaattggtgcattttgagtgaagcagactgccctccacattgtgggtgggcctcatccaatcattcaaaggcctgagacaaaaacactgaggtccctgaag-agagggaattctgcctccacaccgcctttggacctgagctgcaacatcaactctttgctgctggcctacctgctctgcagattgtggatttgccggccccagtgatagcatgaaacagttctttcatcctattggttctaactctctggagcaccctgactaatacaACGCTGTTACAGGTACTGAGAATAGAGTGATCAACAGGGAAGAAAACATGCTGTCTCGGGGCCTTGCTGGTGGGTGGATGGTAGACACTCAATTGTATGAGGCTCATTGGCCATAGAGGAACTCACGCAAGAGAAACTCACCTTGCCTGGGTTGAAAGGAggggaatcaggcacatattcccctctgaggaatatgtcagcagagactggatgtggcaagactacaggtggccggtaggtgggatagagtattccagaccagggaacaaaaagggataaaagtcttccggtggaaaggacatgtttgagaagcagaaacaagaccaggtgctgggatcaggagtCCTACACTCATCACACTCAGTTTCTCATGGGGTGACTTCAGAAGTCCTAGAAttttttgtttcccaatttttttatttttattttctgatagacaagatctcactctgttgcccaggctagagtgcagtggcacgatcgtagctcacagcaacctcaatctttcgggctcaagcgatccacccacctcagcctcccgagtagctgggactatag
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1      77339 847 +    779361 tgaggatgttttgaatgattcaaattggtgcattttgagtgaagcagactgccctccacattgtgggtgggcctcatccaatcattcaaaggcctcagacaaaaacactgaggtccctgaag-agagggaattctgcctccacaccgcctttggacctgagctgcaacatcaactctttgctgctggcctacctgctctgcagattgtggatttgccagccccagtgatagcatgaaacagttctttcatcctattggttctaactctctggagcaccctgactaatacaACGCTGTTACAGGTACTGAGAATAGAGTGATCAACAGGGAAGAAAACATGCTGTCTCGGGGCCTTGCTGGTGGGTGGATGGTAGACACTCAATTGTATGAGGCTCATTGGCCATAGAGGAACTCATGCAGGAGAAACTCACCTTGCCTGGGTTGAAAGGaggggaatcaggcacatattcccctctgaggaatatgtcagcaaagactggatgtggcaagactacaggtggccggtaggtgggatagagtattccagaccagggaacaaaaagggataaaagtcttccggtggaaaggacatgtttgagaagcagaaacaagaccaggtgctgggaccaggagtCCTACACTCATCACACTCAGTTTCTCATGGGGTGACTTCAGAAGTCCTAGAATTTTTTGTTTCCCAATTTTTAAAtttttattttctggtagacaagatctcactctgttgcccaggctagagtgcagtggcatgatcgtagctcacagcaacctcaatctctcgggctcaagcgatccacccacctcagcctcctgaggagctgggactacag
i manLeu1.NW_012106264v1   C 0 I 8641
s colAng1.NW_012115577v1     742331 848 -   1829203 tgaggatgttttgaatgattcaaattggtgcattttgagtgaagcagactgccctccacattgtgggtgggcctcatccaatcattcaaaggcctgagacaaaaagactgaggtccctgaagaagagggaattctgcctccacaccgcctttggacctgagctgcaatatcaactctttgctgctggcctacctgctctgcagattgtggatttgccggcccccgtgatagcatgaaacagttctttcatccaattggttctaactctctggagcaccctgactaatacaAcgctgttataggcactgagaatagagtgatcaacagggaagaaaacatgctgtcttggggccttgctggtgggtggatggtagacactcaaTTGTATGAGGCTCATTGGCCACAGAGGAACTCATGCAGGAGAAACTTACCTTGCTTGGGTTGAAAAGAggggaatcaggcacatattcccctctgaggaatatgtcagcagagactggatgtggcaagactacaagtggccggtaggtgggatggagtattccagatcagggaacaaaaagggatacaagtctttgggtggaaaggacatgtttgagaagcagaaacaagaccaggtgctgggaccaggagtCCTACACTCATCACACTCAGTTACTCATGGGGTGACTTCAGAAGTCCTAGAAttttttgtttcccaatttttttatttttattttctggtagacaagatcccactctgttgctcaggctagagtgcagtggcatgatcatagctcacagcaacctcaatctctcgggctcaagcgatccatccacctcagcctcccgagtagctgggactatag
i colAng1.NW_012115577v1   M 4711 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=1287424.000000
s hg38.chr6_GL000254v2_alt  1879581 346 +   4827813 atgaatgcatcatgcccagcCGAtttct--tttg----tttgtttgagatggagtctcgctctgtcaccccgagtggagtgcagtggcataatcttggctcactgcaacctccacttcccaagttcaagctattctcctgcctcagcctccctagtagctgggattacagatgcccaccaccacacccagctaatttttgtattttgagtagggacggggttttgccatgttggccaggctggtctcgaactactgacctcaagtgataacgcccgcctcagcctcccaaaatgctgggattacaggcatgagccactgtgcctggccCAATGCAattttaagatgatttta
s panTro5.chr6             30725235 346 + 175400573 atgaatgcatcatgcccagcCGAttttt--tttg----tttgtttgagatggagtcttgctctgtcaccccgagtggagtgcagtggcataatcttggctcactgcaacctccacttcccaagttcaagctattctcctgcctcagcctccctagtagctgggattacagatgcccaccaccacagccagctaatttttgtattttgagtagggacggggttttgccatgttggacaggctggtctcgaactactgacctcaagtgataacgcccgcctcagcctcccaaaatgctgggattacaggcatgagccaccgtgcctggccCAATGCAattttaagatgatttta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31148892 346 + 173848474 atgaatgcatcatgcccagcCGAAtttt--tttg----tttgtttgagatggagtcttgctctgtcaccccgagtggagtgcagtggcataatcttggctcactgcaacctccacttcccaagttcaagctattctcctgcctcagcctccctagtagctgggattacagatgcccaccaccacacccagctaatttttgtattttgagtagggacggggttttgccatgttggacaggctggtctcgaactactgacctcaagtgataacgcccgcctcagcctcccaaaatgctgggattacaggcatgagccaccgtgcctggccCAATGCAattttaagatgatttta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     655840 345 +   2037526 atgaatgcatcatgcccagttGAttttt--tttg----tttgtttgagatggagtctcgctctgtcaccccgagtggagtgcagtggtataatgttggctcactgcaacctccacttcccaagttcaagctattctcctgcctcagcctccctagtagctgggattacagatgcccaccaccacacccagctaatttttgtattttgagtagggacggggttttgccatgttggccaggctggtctcgaactactgacctcaagggat-acgcccgcctcagcctcccaaaatgctgggattacaggcatgagccaccatgcctggccCAATGCAattttaagatgatttta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75323417 346 + 122973662 atgaatgcactgcgctcagcCGAttttt--ttgg----tttgtttgagacggagtctcgctctgtcacccagaatggagtgcagtggcgtaatcttggctcactgcaacctccacttcccaagttcaagctattctcctgcctcagcctccctagtagctgggattacagatgcccaccacaacgcccagctaatttttgtattttgagtagagacggagtttcgccatgttggccaggctggtctcgaactactgacctcaagtgataacgcccgcctcagcctcccaaagtgctgggattacaggcatgagccaccgtgcccggccCAATGCAattttaaaatgattttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31234975 347 + 172585720 gtgcgtgcaccatgcccggACGATGttttatttg----tttgtttgagacggagtctcgctctgttgcccaggctggagtacagtggtgtaactttggctcactgcaacctccacctcccaagttgaagctattctcctgcctcaacctccctagtaggtgggaatacagatgcccaccaccacgcccagctaatttttgtattttgagtagagaaggggtttcaccacgttggtcaggctggtctcgaactactgacctcaagtgat-atgcccgccccagcctcccaaagtgctgggattacaggcgtgaaccaccgtgcccggccCAATACAattttaaaatgatttta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30523990 347 - 170955103 gtgagtgcaccatgcccggACGATGttttatttg----tttgtttgagacggagtctcgctctgttgcccaggctggagtacagtggtgtaactttggctcactgcaacctccacctcccaagttgaagctattctcctgcctcaacctccctagtaggtgggaatacagatgcccaccaccacgcccagctaatttttgtattttgagtagagaaggggtttcaccacgttggtcaggctggtctcgaactactgacctcaagtgat-atgcccgccccagcctcccaaagtgctgggattacaggcgtgagccaccgtgcccggccCAATACAattttaaaatgatttta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     821564 347 +   1495729 gtgcgtgcaccatgcccggACGATGttttatttg----tttgtttgagacggagtctcgctctgttgcccaggctggagtacagtggtgtaactttggctcactgcaacctccacctcccaagttgaagctattctcctgcctcaacctccctagtaggtgggaataccgatgcccaccaccacgcccagctaatttttgtattttgagtagagaaggggtttcaccacgttggtcaggctggtctcgaactactgacctcaagtgat-atgcccgccccagcctcccaaagtgctgggattacaggcgtgagccaccgtgcccggccCAATACAattttaaaatgatttta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      44017 347 -    811324 gtgcgtgcaccatgcccggACGATGttttatttg----tttgtttgagacggagtctcgctctgttgcccaggctggagtacagtggtgtaactttggctcactgcaacctccacctcccaagttgaagctattctcctgcctcaacctccctagtaggtgggaatacagatgtccaccaccacgcccagctaatttttgtattttgagtagggaaggggtttcaccatgttggtcaggctggtctcgaactactgacctcaagtgat-atgcccgccccagcctcccaaagtgctgggattacaggcgtgagccaccgtgcccggccCAATACAattttaaaatgatttta
i cerAty1.NW_012002513v1   C 0 C 0
s colAng1.NW_012115577v1     743179 351 -   1829203 gtgcgtgcaccatgcccggACGAttttttgtttgtttatttgtttgagacggagtctcgctctgtttcccaggctggagtacagtggtgtaaccttggctcactgcaacctccacctcccaagttgaagctattctcctgccccaacctccctagtagctggaaatacagatgcccaccaccacgcccagctaatttttgtattttgagtagagaaggggtttcaccatgttggtcaggctggtctcgaactactgaccttaagtgat-atgcctgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgtgcccggccCAATacaattttaaaatgatttta
i colAng1.NW_012115577v1   C 0 I 6352
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=485952.000000
s hg38.chr6_GL000254v2_alt  1879927 163 +   4827813 tgtatattgtaggagagaaaaataggtaaatatattaagagtattaagagccaaggctttcgattgccctgataaaagatatacaaatacaaagtccaagaagagggaaaaacctataatgtacaatttgaattggaaataccaatatgaattcatgattttt
s panTro5.chr6             30725581 163 + 175400573 tgtatattgtaggagagaaaaataggtaaatatattaagagtattaagagccaaggctttcgattgccctgataaaagatatacaaatacaaagtcaaagaagagggaaaaacctataatgtacaatttgaattggaaataccaatatgaattcatgattttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31149238 162 + 173848474 tgtatattgtaggagagaaaaataggtaaatatattaagagtattaagagccaaggctttcgattgccctgataaaagatatacaaatacaaagtcaaagaagagggaaaaacctataatgtacaatttgaattggaaataccaatatgaattcatga-tttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     656185 163 +   2037526 tgtatatcgtaggagagaaaaataggtaaatatattaagagtattaagagccaaggctttcgattgccctgataaaagatatacaaatacaaagtcaaagaagagggaaaaacctataatgtacaatttgaattggaaataccaatatgaattcatgattttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75323763 159 + 122973662 tgtatattgtaggag----aaataggtaaatatattaagagtattaagagccaaggcgttcggttgccctgataaaagatatacaaatacaaagtcaaagaagagggaaaaacctataatgtacaatttgaattggaaataccaatatgaattcatgattttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31235322 163 + 172585720 tgtatattgcaggatagacaaataggtaaatatattaagagtattaagagccaaggctttcggttaccctgataaaagatacagaaatacaaaatcaaagaagagggaaaaacctataatgtacaatttaaattggaaataccaatatgaattcatgattttt
i rheMac8.chr4             C 0 I 39
s macFas5.chr4             30524337 163 - 170955103 tgtatattgcaggatagacaaataggtaaatatattaagagtattaagagccaaggctttcggttaccctgataaaagatacagaaatacaaaatcaaagaagagggaaaaacctataatgtacaatttaaattggaaataccaatatgaattcatgattttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     821911 160 +   1495729 tgtatattgcaggatagacaaataggtaaatatattaagagtattaagagccaaggctttcggttaccctgataaaagatacagaaatat-aaatcaaaaggaagaggaaaacctataatgtacaatttaaatt-gaaataccaatatgaattcatga-tttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      44364 163 -    811324 tgtatattgcaggatagacaaataggtaaatatattaagagtattaagagccaaggctttcggttgccctgataaaagatacagaaatacaaaatcaaagaagagggaaaaacctataatgtacaatttaatttggaaataccaatatgaattcatgattttt
i cerAty1.NW_012002513v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=89440.000000
s hg38.chr6_GL000254v2_alt  1880090 40 +   4827813 tttaaaccctaaatgtgacttaaagcgatgacacctctgt
s panTro5.chr6             30725744 40 + 175400573 tttaaaccctaaatgtgacttaaagcgatgacacccctgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31149400 40 + 173848474 tttaaaccctaaatgtgacttaaagcgatgacacctctgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     656348 40 +   2037526 tttaagccctaaatgtgacttaaagcgatgacacctctgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75323922 40 + 122973662 tttaaatcctaaatgtgacttaaagcgatgacacctctgt
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30524500 40 - 170955103 ttaaaatcctaaatgtgacttaaagcaatgatacctctgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     822071 39 +   1495729 ttaaaatcctaaatgtgacttaaag-aatgatacctctgt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      44527 40 -    811324 taaaaatcctaaatgtgacttaaagcaatgatacctctgt
i cerAty1.NW_012002513v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e rheMac8.chr4             31235485 39 + 172585720 I

a score=596862.000000
s hg38.chr6_GL000254v2_alt  1880130 193 +   4827813 agcaacgagctctcccagcactaaaga--------------ccattcctcactaaaacg-aatcaatgttccttagaaagatggctgattttggccaggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacaaggtcaggagatcgagaccatcctggcgaacacagtgagaccctgtctcta
s panTro5.chr6             30725784 207 + 175400573 agcaacgagctctcccagcactaaagagtagttactaaagaccattcctcactaaaacg-aatcaatgttccttagaaagatggctgattttggccgggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacaaggtcaggagatcgagaccatcctggcgaacacagtgaaaccctgtctcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31149440 207 + 173848474 agcaacgagctctcccagcactaaagagtagttactaaagaccattcctcactaaaacg-aatcaatgttccttagaaagatggctgattttggccgggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacaaggtcaggagatcgagaccatcctggcgaacacagtgaaaccctgtctcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     656388 207 +   2037526 agcaacgagctctcccagcactaaagagtagttactaaagaccattcctcactaaaaca-aatcaatgttccttagaaagatggctgattttggccgggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacaaggtcaggagatcgagaccatcctggcgaacacagtgaaaccctgtctcta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75323962 207 + 122973662 agcaacgagctctcccagcactaaagagtagttactaaagaccattcctcactaaaacg-aatcaatgttccttagaaagatggctgattttggccgggcccagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcatgaggtcaggagatcgagaccatactggcgaacacagtgaaaccctgtctcta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31235524 206 + 172585720 agcaacgagctctcccagcactaaagagtagttactaaagaccattcctcactaacacg-aatcaatgttccttagaaagatggctgattttggccgggtgcggtggctcacgcctgtaatccgagcacttcgggaggccaaggcaggca-atcacgaggtcaggagatcgagaccatcatggcgaacatggtgaaaccccatgtcta
i rheMac8.chr4             I 39 C 0
s macFas5.chr4             30524540 206 - 170955103 agcaacgagctctcccagcactaaagagtagttactaaagaccattcctcactaacacg-aatcaatgttccttagaaagatggctgattttggccgggtgcggtggctcacgcctgtaatccgagcacttcgggaggccaaggcaggca-atcacgaggtcaggagatcgagaccatcatggcgaacatagtgaaaccccatgtcta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     822110 201 +   1495729 aacaacgagctctcccagcactaaagagtagttactaaaagaccatcctcactaacacgaaatcaatgttccttagaaagat-gctgatttt-gccgggtgcggtggctcacgcctgtaatcc-agcacttc-ggaggccaaggcaggca-atcacga-gtcaggagatcgaga-catcatggcgaacatggtgaaaccccatgtttc
i macNem1.NW_012012100v1   C 0 I 30
s cerAty1.NW_012002513v1      44567 206 -    811324 agcaacgagctctcccagcactaaagagtagttactaaagaccattcctcactaacacg-aatcaatgttccttagaaagatggctgattttggccgggtgcggtggctcacgcctgtaatccgagcacttcgggaggccgaggcaggca-atcacgaggtcaggagatcgagaccatcatggcgaacatggtgaaaccccatgtcta
i cerAty1.NW_012002513v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=59594.000000
s hg38.chr6_GL000254v2_alt  1880323 31 +   4827813 ctaaaaatacaaaaaa-gtagacaggcatggt
s panTro5.chr6             30725991 32 + 175400573 ctaaaaatacaaaaaaagtagacaggcatggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31149647 32 + 173848474 ctaaaaatacaaaaaaagtagacaggcatggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     656595 32 +   2037526 ctaaaaatacaaaaaaagtagacaggcatggt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75324169 32 + 122973662 ctaaaaatacaaaaaaagtagccaggcatggt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31235730 32 + 172585720 ctaagaatacaagaaaattagtggggcgtgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30524746 32 - 170955103 ctaagaatacaagaaaattagtggggcgtgtt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      44773 32 -    811324 ctaagaatacaagaaaattagtggggcgtgtt
i cerAty1.NW_012002513v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e macNem1.NW_012012100v1     822311 30 +   1495729 I

a score=344852.000000
s hg38.chr6_GL000254v2_alt  1880354 121 +   4827813 ggtgggcacctgtagtcccagctacttgggaggctgaggcaggagaatggcatgaacct--ggggac-agagcttgcagtgcgctgagatcacgccactgcattccagcctgggcgacagagca
s panTro5.chr6             30726023 121 + 175400573 ggtgggcacctgtagtcccagctacttgggaggctgaggcaggagaatggcatgaacct--ggggac-agagcttgcagtgcgctgagatcatgccactgcattccagcctgggcgacagagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31149679 122 + 173848474 ggtgggcacctgtagtcccagctacttgggaggctgaggcaggagaatggcatgaacct--ggggacgagagcttgcagtgcactgagatcatgccactgcattccagcctgggcgacagagca
i panPan2.chr6             C 0 I 3230
s gorGor5.CYUI01015528v1     656627 121 +   2037526 ggtgggcacctgtagtcccagctacttgggaggctgaggcaggagaatggcatgaaccc--ggggac-agagcttgcagtgcgctgagatcacgccactgcattccagcctgggcgacagagca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75324201 121 + 122973662 ggtgggcacctgtagtcccagctacttgggaggctgaggcaggagaatggcatgaaccc--agggac-agagcttgcagtgagctgagatcgcaccactgcactccagcctgggcgacagagca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31235762 123 + 172585720 ggcggacacctgtagtcccagctacttggtaggctgaggcaggagaatggcatgaaccccgtggggc-ggagcttgcagtgagctgagattgtgccactgcactccagcctgggtgacagagca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30524778 123 - 170955103 ggcggacacctgtagtcccagctacttggtaggctgaggcaggagaatggcatgaaccccatggggc-agagcttgcagtgagctgagattgtgtcactgcactccaccctgggtgacagagca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     822341 120 +   1495729 ggcggacacctgtagtcccagctacttggta-gctga-gcaggagaatggcatgaaccccgtggggc-ggagcttgcagttagctgagattggtccactgcactcca-gctgggtgacagagca
i macNem1.NW_012012100v1   I 30 C 0
s cerAty1.NW_012002513v1      44805 123 -    811324 ggcggacacctgtagtcccagctacttggtaggctgaggcaggagaatggcatgaaccccgtggggc-ggagcttgcagtgagctgagattgtgccactgcacttcagcctgggtgacagagcg
i cerAty1.NW_012002513v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I

a score=166526.000000
s hg38.chr6_GL000254v2_alt  1880475  86 +   4827813 agactcggcctcaaaaaaaaa-aaaaaaaaaaaaaaa--------------------agatggctgattttggccaagtgcagtggctcatgcctgtaatcccagc-a
s panTro5.chr6             30726144  85 + 175400573 agactcggcctcaaaaaaaaa-aaaaaaaaaaaaaaa---------------------gatggctgattttggccaagtgcagaggctcatgcctgtaatcccagc-a
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     656748 106 +   2037526 agactcggcctcaaaaaaaaa-aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagatggctgattttggccaagtgcagtggctcatgcctgtaatcccagc-a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75324322  85 + 122973662 agactccatctcaaaaaaaaa-taaaaataaaaataa--------------------agatggctgattttggccaagtgcagtggctcatgcctgtaatccc-gc-a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31235885  88 + 172585720 agactccgcttccagaaaaaa-aaaaaaagaaagaaa-----------------gaaagatggctgattttggccaggtgcaggggctcatgcctgtaatcccagc--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30524901  88 - 170955103 agactccgcctccagaaaaaa-aaaaaaagaaagaaa-----------------gaaaGATGGCTGATTTTggccaggtgcaggggctcatgcctgtaatcccagc--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     822461  88 +   1495729 agactccgcctccagaaaaaa-aaaaaaagaaagaaa-----------------gaaagatggctgcattttgccaggtgcaggggctcatgcctgtaatcccagc--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      44928  90 -    811324 agactctgcctcCagaaaaaagaaagaaagaaagaaa-----------------gaaagatggctgattttggccaggtgcaggggctcatgcctgtaatcccagca-
i cerAty1.NW_012002513v1   C 0 I 14
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e panPan2.chr6             31149801 3230 + 173848474 I

a score=3591.000000
s hg38.chr6_GL000254v2_alt  1880561 7 +   4827813 atttggg
s panTro5.chr6             30726229 7 + 175400573 atttggg
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     656854 7 +   2037526 atttagg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75324407 7 + 122973662 atttggg
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e cerAty1.NW_012002513v1      45018 14 -    811324 I
e macNem1.NW_012012100v1     822549 0 +   1495729 C
e macFas5.chr4             30524989 0 - 170955103 C
e rheMac8.chr4             31235973 0 + 172585720 C
e panPan2.chr6             31149801 3230 + 173848474 I

a score=1431417.000000
s hg38.chr6_GL000254v2_alt  1880568 650 +   4827813 aggctaaaggcaggcagat---------gcagatcacttgaggccaagagtttgagaccagcctggccaacataatgaaaccccatctctactaaaagtacaaaaattagccaggcgtagtggcaatgcctataatcccagttactcaggaggctgaggtgggaggatcacttgaactctggaggcagaggttgcagtgagctgagatcatgccactacacttcagcctgggtgacagagtgagactctgtctcaagaaaaaaaa-----------------------------aggaaagaaagaaagaaaaaagaaaaagaaaaatggctgattccacatctggagctgggaaagtaaaaaaaaattgtgcctgggacatctagttgtgt-caaaagcaagcaagtgctcacagaacttttggggtatgtcagaatggatgtaggagttagcttaaaagggctcccactggGGCCCTCTCCCAAtctagatcattctggccaataaggtgaaaccccgtctgtactaa-aaatacaaaaattagctggccatggtggcatgcacctgtagtcccagcta-ctcaggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagccgagatcgtaccactgcactccagcctggtgacagagtgagactccatctc
s panTro5.chr6             30726236 645 + 175400573 aggctaaaggcaggcagat---------gcagatcacttgaggccaagagtttgagaccagcctggccaacataatgaaaccccatctctactaaaaatacaaaaattagccaggcgtagtggcaatgcctataatcccagttactcaggaggctgaggtgggaggatcacttgaactccggaggcagaggttgcagtgagctgagatcatgccactacacttcagcctgggtgacagagtgagactctgtctcaagaaaaaaaa------------------------------ggaaagaaagaaagaaaaaagaaaaagaaaaatggctgattccacatctggagctgggaaagtaaaaa----ttgtgcctgggacatctagttgtgt-caaaagcaagcaagtgctcacagaacttttggggtatgtcagaatggatgtaggagttagcttaaaagggctcccactggGGCCCTCTCCCAAtctagatcattctggccaataagatgaaaccccgtctgtactaa-aaatacaaaaattagctgggcatggtggcatgcacctgtcatcccagcta-ctcgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagccgagatcgtgccactgcactccagcctggtgacagagtgagactccatctc
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     656861 647 +   2037526 aggctaaaggcaggcagat---------gcagatcacttgaggccaagagtttgagaccagcctggccaacataatgaaaccccatc-ctactaaaaatacaaaaattagccaggcgtagtggcaatgcctataatcccagttactcaggaggctgaggtgggaggatcacttgaactccggaggcagaggttgcagtgagctgagatcatgccactacacttcagcctgggtgacagagtgagactctgtctcaagaaaaaaaa--------------------------cgaaagaaagaaagaaaaaagaaagaaaaagaaaaatggctgattccacatctggagctgggaaagtaaaaa----ttgtgcctgggacatctagttgtgt-caaaagcaagcaagtgctcacagaacttttggggtatgtcagaatggatgtaggagttagcttaaaagggctcccact-ggGCCCTCTCCCAAtccagatcattctggccaataaggtgaaaccccgtctgtactaa-aaatacaaaaattagctgggcatggtggcatgcacctgtagtcccagcta-ctcgggaggctgaggcaggagaattgcttgaacccaggaggcggaggttgcagtgagccgagatcgtgccactgcactccagcctggtgacagagtgagactccatctc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75324414 650 + 122973662 aggctaaaggcaggcagat---------gcagatcacttgaggccaagagtttgagaccagcctggccaacataatgaaaccccatctctactaaaaatacaacaattagccaggcgtagtggcaatgcctataatcccagttactcaggacgctgaggcgggaggatcacttgaacctgggaggcagaggttgcagtgagccaagatcatgtcactacgcttcagcctgggtgacagactgagactctgtctcaagaaaaaaaa-------------------------aaaaaggaaataaagaaagaaaaaagaaaaagaaaaatggctgatgccacatctggagctgggaaagtaaaaa----ttgtgcctgggacatctggttgtgt-caaaagcaagcaagtgctcacagaacttctggggtatgtcagaaaggatgtaggagtttgcttaaaggggctcccactggGGCTGTCTCCCAAtccagaccattctggccaataaggtgaaaccctgtctgtactaa-aaatacaaaaattagctgggcgtggtggcatgcacctgtagtcccagcta-ctcaggaggctgaggcaggagaatcgcctgaacccaggaggtggaggttgcagtgagccaggaccatgccactgcactccagcctggtgacagagtgagactccatctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31235973 666 + 172585720 aggctaaaggtgggcaggctaaatgtgggcagatcacttgaggtcaagagtttgagaccagcctggccaacataatgaaaccccatctgtactaaaaatataaaaattagccaggcgtagtggcaacgcctataatcccagttactcaggaggctgaggtgggatgatcgcttgaaccctggaggcagaggttgcagtgagctgacatcatgccactacacttcagcctgggtgacagagtgagactctgtctcaaaaaaaaaaa------------------aaaagaaaaagaaaaagaaaagaaaaaagaaagaaaaagataaatggctgattccacatctggagctgggaaagtaaaaa----ttgttcctgggacatctgattgtgt-caaaagcaagcaagtgctcacagaacttttggggtacgtcagaaaggatgtaggagttagcttaaaacggctcccactggGGCCCTTTCCCAAtccagaccatcctggccaacaaggtgaaaccctgtctctactac-aaatacaaaaattagctgggcatggtggcgagcacctgtagttccagcta-ctcaggaggctgagacaggagactcacttgaacccaggaggtggaggttgcagtgagctgagatcgcgccactgcactccagcctggtgacagagcgagactccatctc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30524989 668 - 170955103 aggctaaaggtgggcaggctaaaggtgggcagatcacttgaggtcaagagtttgagaccagcctggccaacataatgaaaccccatctctactaaaaatataaaaattagccaggcgtagtggcaacgcctataatcccagttactcaggaggctgaggtgggatgatcgcttgaaccctggaggcagaggttgcagtgagctgacatcatgccactacacttcagcctgggtgacagagtgagactctgtctcaaaaaaaaaaa----------------agaaaaagaaaagaaaaagaaaagaaaaaagaaagaaaaagaaaaatggctgattccacatctggagctgggaaagtaaaaa----ttgttcctgggacatctggttgtgt-caaaagcaagcaagtgctcacagaacttttggggtacgtcagaaaggatgtaggagttagcttaaaacggctcccactggGGCCCTCTCCCAAtccagaccatcctggccaacaaggtgaaaccctgtctctactac-aaatacaaaaattagctgggcatggtggcgagcacctgtagttccagcta-ctcaggaggctgagacaggagactcacttgaacccaggaggtggaggttgcagtgagctgagatcgcgccactgcactccagcctggtgacagagcgagactccatctc
i macFas5.chr4             C 0 I 4067
s macNem1.NW_012012100v1     822549 642 +   1495729 aggctaaaggt-ggcaggctaaaggt--gcagatcacttgaggtcaaga-tttgagaccagcct-gccaacataatgaaaccccatctctactaaaaatat-aaaattagccaggcgtagt-gcaacgcctataatcccagttactca-gaggctgag--tggatgatcgcttgaaccctgga-gcaga-gttgcagtgagctgacatcatgcca-tacacttcagcctgggtgacagagtgagactctgtctcaaaaaaaaa--------------------aaaaagaaaaagaaaaagaaagaaaaagaaacgaaaa--aaaaatggctgattccacatctggagct-ggaaagtaaaaa----ttgttcctgggacatctggttgtgtccaaaagcaagcaagtgctcacagaactttttgggtacgatcagaaagatgtaggagttagcttaaaacggctcccact-ggGCCCTCTCCCAAtccagaccatcctg--caacaaggtgaaa-cctgtctctactacaaaatacaaaaatagcctgggcatggtggcgagcacctgtagttccagctacctcaggaggctgagacagga-actcacttgaa-ccaggaggtggaggttgcagtgagctga-atcgcgccactgcactccagcctgg-gaca-agcgagactccatctc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      45032 669 -    811324 ---------------aggctaaaggcgggcagatcacttgaggtcaagagtttgagaccaacctggccaacataatgaaaccccacctctactaaaaatataaaaattagccaggcgtagtggcaacgcctataatcccagttactcaggaggctgaggtgggatgatcgcttgaaccctggaggcagaggttgcagtgagccgacatcatgccactacacttcagcctgggtgacagagtgagactctgtttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaagaaaaaagaaagaaaaagaaaaatggctgattccacatctggagctgggaaagtaaaaa----ttgtgcctgggacatctggttgtgt-caaaagcaagcaagtgctcacagaacttttggggtacgtcagaaaggatgtaggagttagcttaaaagggctcccactggGGCCCTCTCCCAAtccagaccatcctggccaacaaggtgaaaccctgtctctactac-aaatacaaaaattagctgggcatggtggtgcacacctgtagttccagcta-ctcaggaggctgagacaggagactcacttgaacccaggaggtggagggtgcagtgaaccaagatcgcgccactgcactccagcctggtgacagagcgagactccatctc
i cerAty1.NW_012002513v1   I 14 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e panPan2.chr6             31149801 3230 + 173848474 I

a score=2223151.000000
s hg38.chr6_GL000254v2_alt  1881218 1239 +   4827813 aaattaaaaaaaaaaaaaaaggctcccactggacacataaggtacagttcgagcacaaaaa-aataatgactgtaaccaattgtgaaatattaaatggatacctggcatggtgtagtcccagcactttg--aggccaaggcaggtggatcacttaatctcaggcaacatggcaaaaccccatctctacaaaaaatacaaaaatcatctgggtgtggtggcatgcacctgtggtcccagctactcaggaggctgaggtaggaggatcacttgagcctggcaggttgaggctgcagtgagtggtaattgcgccactgcactccagcctgggcaacagaccgtgatgctgtctcaaaaaataaaagaaatactgaatgga---taaaaaccctaaatctatagtttaaaaaaagaaaaaa-aataaattttctacctttggagattaatatcataccaataccttattctgaaaactggtaaagggaaataagcatttaccttgcctttTAGAAGGACCCTACTTTggccgggcgctgtggctcatgtctgtaatcccagcactttgggaggctgaggcaggtggatcacttgaggtcaggagtttgagaAGGACCCTAC-TTTTTCCAGTTGGTGagagaaagctccttcctaggtaattatgcccttataaatgtagaagtgggagaattagaaaagcaccttttgtaatttctgatgaaataaccaattcaagcaagaatcactgtagatggcgataagagaaagtttttcagcgtatacacacagtgtcaaagaaccatgcagacgacttgctaattgccaagagggaaacataacctttacagaaaagatctgaccgtgtccatcctaaccaagcaatcatacttagcatcactgcttgtgggatggcttcatatcatatgccttctgatgtgaggcaatgtgacatatatagcaagtttgaggaattagtcccaagactgggtaacctgaatctaaccaagaaatt-gggggaaaacccctcaaaactcagggagacagatgaacacattaagtgacatcaaagaaacagtaagacaaatctagaatgttgaacagtctaaaagacaactgccctagtatcctcaaagatccaattccaagaag-aaaaaaactggatgattgtagattaaaaagaaaggggtgagaaaaggaca-taaaaaaatgcaatgttgaaacttgattggttcctgttctgggagtttttt
s panTro5.chr6             30726881 1241 + 175400573 aaattaaaaaaaaaaaaaa-ggctcccactggacacataaggtacagttcgagcacaaaaa-aataatgactgtaaccaattgtgaaatattaaatggatacctggcatggtgtagtcccagcactttgggaggccaaggcaggtggatcgcttgatctcaggcaacatggcaaaaccccatctctacaaaaaatacaaaaatcatctgggtgtggtggcatgcacctgtggtcccagctactcaggaggctgaggtaggaggatcacttgagcctggcaggttgaggctgcagtgagtggtaattgcgccactgcactccagcctgggcaacagaccgtgatgctgtctcaaaaaataaaagaaatactgaatgga---taaaaaccctaaatctatagtttaaaaaaagaaaaaataataaattttctacctttggagattaatatcataccaataccttattctgaaaactggtaaagggaaataagcatttaccttgcctttTAGAAGGACCCTACTTTggccgggcgctgtggctcatgtctgtaatcccagcactttgggaggctgaggcaggtggatcacttgaggtcaggagtttgagaAGGACCCTAC-TTTTTCCagttggtgagagaaagctccttcctaggtaattatgcccttataaatgtagacgtgggagaattagaaaagcaccttttgtaatttctgatgaaataaccaattcaagcaagaatcactgtagatggcgataagagaaagtttttcagcatatacacacagtgtcaaagaaccatgcagatgacctgctaattgccaagagggaaacataacctttacagaaaagatctgaccgtgtccatcctaaccaagcaatcatacttagcatcactgcttgtgggatggcttcatatcatatgccttctgatgtgaggcaatgtgacatatatagcaagtttgaggaattagtcccaagactgggtaacctgaatctaaccaagaaatt-gggggaaaacccctcaaaactcagggagacagatgaacacattaagtgacatcaaagaaacagtaagacaaatctagaatgttgaacagtctaaaagacaactgccctagtatcctcaaagatccaattccaagaag-aaaaaaactggatgattgtagattaaaaagaaaggggtgagaaaaggaca-taaaaaaatgcaatgttgaaacttgattggttcctgttctgggagtttttt
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     657508 1236 +   2037526 aaat---aaaaaaaaaaaa-ggctcccactggacacataaggtacagttcgagcacaaaaa-aataatgactgtaaccaattgtgaaatattaaatggatacctggcatggtgtagtcccagcactttgggaggccaaggcaggtggatcgcttgatctcaggcaacatggcaaaacctcatctctacaaaaaatacaaaaatcatctgggtgtggtggcatgcacctgtggtcccagctactcaggaggctgaggtaggaggatcacttgagcctgccaggttgaggctgcagtgagtggtaattgcgccactgcactccagcctgggcaatagaccgtgatgctgtctcaaaaaataaaagaaatactgaatgga---taaaaaccctaaatctatagtttaaaaaaagaaaaaa-agtaaattttctacctttggagattaatatcataccaacaccttattctgaaaactggtaaagggaaataagcatttaccttgcctttTAGAAGGACCCTACTTTggccgggcgctgtggctcatgtctgtaatcccagcactttgggaggctgaggcgggtggatcacttgaggtcaggagtttgagaAGGACCCTAC-TTTTTCCAGTTGGTGagagaaagctccttcctaggtaattatgcccttataaatgtagaagtgggagaattagaaaagcaccttttgtaatttctgatgaaataaccaattcaagcaagaatcactgtagatggtgataagagaaagtttttcagcatatacacacagtgtcaaagaaccatgcagataacttgctaattgccaagagggaaacataacctttacagaaaagatctgaccgtgtccatgctaaccaagcaatcatagttagcatcactgcttgtgggatggcttcatatcatatgccttctgatgtgaggcaatgtgacatatatagcaagtttgaggaattagtcccaagactgggtaacctgaatctaaccaagaaatt--ggggaaaacccctcaaaactcagggagacagatgaacacattaagtgacatcaaagaaacagtaagacaaatctagaatgttgaacagtctaaaagacaactgccctagtatcctcaaagatccaattccaagaag-aaaaaaactggatgattgtagattaaaaagaaaggggtgagaaaaggaca-taaaaaaatgcaatgttgaaacttgattggttcctgttctgggagtttttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75325064 1237 + 122973662 aaat------aaaaaaaaa-ggctcccactggacatataaggtacagttcgagcacaaaaa-aataatgactgtgatcaattgtgaaatattaaatggatacctggtatggtgtagtcccagcactttgggaggtcaaggcaggtggatcgcttgagctcaggcaacatggcaaaacctcatctctacaaaaaatacaaaaatcatctgggtgtggtggcatacacctgtggtcccagctactcaggaggctgaggtaggaggatcacttgagcctggcaggttgaggctgcagtgagtgataattgcgccactgcactccagcctgggcaacagaccatgatgctgtctcaaaaaataaaagaaatactgaatgga---taaaaaccctaaatctatagtttaaaaaaagaaaaaataataaattgtctacctttggagattaatatcataccaacaccttattctgaaaactggtaaagggaaataagaatttaccttgcctttTAGAAGGACCCTACTTTggccgggcgctgtggctcatgtctgtaattccagcactttgggaggctgaggcaggcggatcacttgaggtcaggagtttgagaAGGACCCTAC-TTTTTCCAGTTGGTGagagaaagctccttcctaggtaattatgcccttataaatgtagaagtgggagaattagaaaagcaccttttgtaatttctgatgaaataaccaattcaagcaagaatcactgtagatggcaataagagaaagttttttagcatatacacacagtgtcaaagaaccatgcagatgacttgctaattgccaagagggaaacataacctttatagaaaagatctgaccatgtccaccttaaccaagcaatcatacttagcatcactgcttgtgggatgacttcatattatatgccttctgatgtgaggcaatgtgacatatatagcaagtttgaagaattagtcccaagattgggtaacctgaatctaaccaagaaattggggggaaaacccctcaaaactcagggagacagatgaacacattaagtgacatcaaagaaacagtaagacaaatctagaatgttgaacagtctaaaagacaactgccctagtctcctcaaagatccaattccaagaagaaaaaaaactggatgattttagattaaaaagaaaggggtgagaaaaggaca-taaaaaaatgcaatgttgaaacttgattggttcctgttctgggagtttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31236639 1237 + 172585720 -aaaaaaaaaaaaaaaaaa-ggctcccactggacacataaggtacagtttgagcacaaaaagaataatgactgtaatcaattgtgaaatattaaatggatacctggcacggtgtagtcccagcactttgggaggccaaggcaggtggatcgcttgcgttcaggcaacatggcaaaacctcatctctacaaaaaatacaaaaattatctgggtgtgatggcatgcacctgtggtcccagctactcag------gagatcggaggatcacttgagcctggcaggttgaggttgcagtgagtggtaattgcgccactgcactccagcctgggcaacagaccgtgatgttgtctcaaaaaataaaagaaatactaaattgattttaaaaaccctaaatctatagtttaaaaaaaagaaaaataataaattttctacctttggagattagtatcataccaacaccttattctgaaaactggtaaagggaaataagcatctaccttgcctttTAGAAGGACCCTACTTTggccgggcactgtggctcatgcctgtaatccaagcactttgggaggctgtggtgggcggatctcttgaggtcaggagtttgagaAGGACCCTAC-TTTTTCCagctggagagag-aatctccttcctaggtaattatgcccttataaacgtgggagtgggagaattcgaaaagcaccttttgtaatttctgatgaaataaccaattcaagcaagaatcactgtagatggcaataagagaaagttttttagcatatacacacagtgtcaaagaaccatgcagatgacttgctaattacaaagagggaaacataacctttatagaaaagatctgaccgtgtccaccttaaccaagcaatcacacttaccatcactgcttgtgggatgacttcatattacatgccttctgatatgaggcaatgtgacatagacagcatgtttgaagaattagtctcaagattgggtaacctgaatctaaccaagaaattgggggaaaaaccccacaaaactcagggagacagatgaacacattaagtgacatcaaagaaacagtaagac--atctagaatattgaacagcctaaaagacaactgctctagtctcctcaaagatccaattccaagaag-aaaaaaactggatgacagtagatttaaaagaaaggggcgagaaaaggacattaaacaaatgcaatgttgaaacttgattggttcctgttctgggagttttta
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     823191 1227 +   1495729 ----------aaaaaaaaa-ggctcccactggacacataaggtacagtttgagcacaaaaagaataatgactgtaatcaattgtgaaatattaaatggatacctggcacggtgtagtcccagcactttgggaggccaaggcaggtggatcgcttgcgttcaggcaacatggcaaaacctcatctctacaaaaaatacaaaaattatctgggtgtgatggcatgcacctgtggtcccagctactcag------gagatcggaggatcacttgagcctggcaggttgaggttgcagtgagtggtaattgcgccactgcactccagcctgggcaacagaccgtgatgttgtctcaaaaaataaaagaaatactaaattgattttaaaaaccctaaatctatagtttaaaaaaaagaaaaataataaattttctacctttggagattagtatcataccaacaccttattctgaaaactggtaaagggaaataagcatctaccttgcctttTAGAAGGACCCTACTTTggccgggcactgtggctcatgcctgtaatccaagcactttgggaggctgtggtgggcggatctcttgaggtcaggagtttgagaAGGACCCTAC-TTTTTCCagctggagagag-aatctccttcctaggtaattatgcccttataaacgtgggagtgggagaattcgaaaagca-cttttgtaatttctgatgaaataaccaattcaagcaagaatcactgtagatggcaataagagaaagttttttagcatatacacacagtgtcaaagaaccatgcagatgacttgctaattacaaagagggaaacataacctttataggaaagatctgaccgtgtccaccttaaccaagcaatcacacttaccatcactgcttgtgggatgacttcatattacatgccttctgatgtgaggcaatgtgacatagacagcatgtttgaagaattagtctcaagattgggtaacctgaatctaaccaagaaattggggggaaaaccccacaaaactcagggagacagatgaacacattaagtgacatcaaagaaacagtaagac--atctagaatattgaacagcctaaaagacaactgctctagtctcctcaaagatccaattccaagaag-aaaaaaactggatgacggtagatttaaaagaaaggggcgagaaaaggacattaaacaaatgcaatgttgaaacttgattggttcctgttctgggagttttta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      45701 1239 -    811324 aaaaaaaaaaaaaaaaaaa-ggctcccactggacacataaggtacagtttgagcacaaaaagaataatgactgtaatcaattgtgaaatattaaatggatacctggcacggtgtagtcccagcactttgggaggccaagacaggtggattgcttgcgttcaggcaacatggcaaaacctcatctctacaaaaaatacaaaaattatctgggtgtgatggcatgcacctgtggtcccagctactcag------gagatcggaggatcacttgagcctggcaggttgaggttgcagtgagtggtaattgcgccactgcactccagcctgggcaatagaccgtgatgttgtctcaaaaaataaaagaaatactaaattgattttaaaaaccctaaatctatagtttaaaaaaaagaaaaaaaataaattttctacctttggagattagtatcataccaacaccttattctgaaaactggtaaagggaaataagcatctaccttgcctttTAGAAGGACCCTACTTTggccgggcactgtggctcatgcctgtaatccaagcactttgggaggctgtggtgggcgaatctcttgaggtcaggagtttgagaAGGACCCTACTTTTTTCCagctggagagag-aatctccttcctaggtaattatgcccttataaacgtgggagtgggagaattcgaaaagcaccttttgtaatttctgatgaaataaccaattcaagcaagaatcactgtagatggcaataagagaaagttttttagcatatacacacagtgtcaaagaaccatgtagatgacttgctaattacaaagagggaaacataacctttatagaaaagatctgaccgtgtccaccttaaccaagcaatcacacttaacatcactgcttgtgggatgacttcatattacatgccttctgatgtgaggcaatgtgacatagacagcatgtttgaagaattagtcccaagattgggtaacctgaatctaaccaagaaattggggggaaaaccccacaaaactcagggagacagatgaacatattaagtgacatcaaagaaacagtaagac--atctagaatattgaacagcctaaaagacaactgctctagtctccccaaagatccaattccaaaagg-aaaaaacctggatgattgtagatttaaaagaaaggggcgagaaaaggacatttaaaaaatgcaatgttgaaacttgatttgttcctgttctgggagtttttt
i cerAty1.NW_012002513v1   C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e chlSab2.chr17            30074781 2720 -  71996105 I
e macFas5.chr4             30525657 4067 - 170955103 I
e panPan2.chr6             31149801 3230 + 173848474 I

a score=584452.000000
s hg38.chr6_GL000254v2_alt  1882457 241 +   4827813 aaaagctatatattaaaacatcatgctatacaccataaatctatacaatttttatttggtaattatact----------taggaaaaattaaatgctataaaaggcattcaaattggagaagtttaatgctagatgacattaaaaattattaactcattaaacatgatgattctattatgattgtgtaagagatgtatatgaagtatttaggg--gtgaatggtcatgatgtctgcaagtttctttttttt---------tg
s panTro5.chr6             30728122 239 + 175400573 aaaagctatatattaaaacatcatgctatacaccataaatctatacaatttttatttggtaattatact----------taggaaaaattaaatgctataaaaggcattcaaattggagaagtttaatgctagatgacattaaaaattattaactcattaaacatgatgattctattatgattgcgtaagagatgtatatgaagtatttaggg--gtgaatggtcatgatgtctgCA-Gtttctttttttt----------g
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     658744 241 +   2037526 aaaagctatatattaaaacatcatgctatacaccataaatctatacaatttttatttggtaattatact----------taggaaaaattaaatgctataaaaggcattcaaattggagaagtttaatgctagatgacattaaaaattattaactcattaaacatgatgattctattatgattgtgtaagagatgtatatgaagtatttaggg--gtgaatggtcatgatgtctgcaagtttctttttttt---------tg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75326301 258 + 122973662 aaaagctatatattaaaacatcatgctatacaccgtaaatctatataatttttatttggtaattatacttaaataaagctaggaaaaattaaatgctataaaaggcattcaaattggagaagtttaatgctagatgacattaaaaattattaactcattaaacatgataattctattatgattgtgtaagagatgtatatgaagtatttaggg--gtgaatgctcatgatgtctgcaactttctttttttt--ttttttttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31237876 260 + 172585720 aaaagctatatattaaaacatcatgctatacaccataaatatatacaatttttatttggtaattatatttaaataaagctaggaaaaattaaatgctttaaaaggcattcaaattggagaagtttaatgctagatgatattaaaaattattaactcattaaacatggtaattctattgtgattgtgtaagagatgtatatgaagtagttaggg--gtgaatggtcatgatgtctgCAACtttcttttcttttctttttttta
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     824418 262 +   1495729 aaaagctatatattaaaacatcatgctatacaccataaatatatacaatttttatttggtaattatacttaaataaagctaggaaaaattaaatgctttaaaaggcattcaaattggagaagtttaatgctagatgatattaaaaattattaactcattaaacatgataattctattgtgattgtgtaagagatgtatatgaagtagttaggggtgtgaatggtcatgatgtctgCAACtttcttttcttttctttttttta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      46940 260 -    811324 aaaagctatagattaaaacatcatgctatacaccataaatatatacaatttttatttggtaattatacttaaataaagctaggaaaaattaaatgctttaaaaggcattcaaattggagaagtttaatgctagatgatattaaaaattattaactcattaaacatgataattctattgtgattgtgtaagagatgtatatgaagtagttaggg--gtgaatggtcatgatgtctgcaactttcttttcttttctttttttta
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30077501 260 -  71996105 aaaaGCTAtatattaaaacatcatgctatacaccataaatatatacaatttttatttggtaattatacttaaataaagctaggaaaaATTAAATGCTTTAAAAGGCATTCAAATTGGAGAAGTTTAATGCTAGATGATATTAAAAATTATTAACTCATTAAACAtgataattctattgtgattgtgtaagagatgtatatgaagtagttaggg--gtgaatggtcatgatgtctgcaactttcttttcttttctttttttta
i chlSab2.chr17            I 2720 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           683080 7340 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e macFas5.chr4             30525657 4067 - 170955103 I
e panPan2.chr6             31149801 3230 + 173848474 I

a score=251053.000000
s hg38.chr6_GL000254v2_alt  1882698 92 +   4827813 agatggagttttgctctgtcacccaggctagagtgcagtggcactatcttggctcactgcaacctccacctcccag-gtttgagcaattttcc
s panTro5.chr6             30728361 92 + 175400573 agatggagttttgctctgtcacccaggctagagtgcagtggcactatcttggctcactgcaacctccgcctcccag-gtttgagcaattttcc
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     658985 91 +   2037526 agatggagttttgctctgtcacccaggctagagtgcagtggca-tatcttggctcactgcaacctccgcctcccag-gtttgagcaattttcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75326559 92 + 122973662 agatggagttttgctctgtcacccaggctagagtgcagtggcgctatcttggctcactgcaacctccgcctcccag-gttcgagcaattttcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31238136 92 + 172585720 agacagagtattgctgtgtcgcccaggctagagtgcagtggtgctatcttggctcactgcaacctccgcctcccag-gttcaagcaattctcc
i rheMac8.chr4             C 0 I 2516
s macNem1.NW_012012100v1     824680 92 +   1495729 agacagagtattgctgtgtcgcccaggctagagtgcagtggtgctatcttggctcactgcaacctccgcctcccag-gttcaagcaattctcc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      47200 92 -    811324 agacagagtattgctgtgtcgcccaggctagagtgcagtggtgctatcttggctcactgcaacctccgcctcccag-attcaagtaattctcc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30077761 92 -  71996105 agacagagtattgctgtgtcgcccaggctagagtgcagtggtgctatcttggctcactgcaatctccgcctcccag-gttcaagcaattctcc
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550           690420 93 +  18854210 agacagagtaatattttgttgcccaggttagagtgctgctgcatcagccaagctcacagcaacctcaaactcctagagttcaagcaatcctcc
i otoGar3.GL873550         I 7340 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e macFas5.chr4             30525657 4067 - 170955103 I
e panPan2.chr6             31149801 3230 + 173848474 I

a score=523072.000000
s hg38.chr6_GL000254v2_alt  1882790 301 +   4827813 cacctcagcgtcctgagtagctgggatcataggcatgtaccaccatgcccggctaattttttg-tatttttagtagagacggggtttcac-catgttggcc------------------------------------------------------------aggctg--------------------gtctccaactcctggcctcaggtgatccgcctacctcggcctcccaaagtactgggattacaggtatgagccaccatgcccagcc---------------------gatgtctcc--aactttcaaatggttcagGGCTGGGTGCAG-----------tgcaatcc-cagcactttgggagg------------ccgaaggaggcggatcacc---tgaggtcaggagtttgagg-------ccaccttggcc
s panTro5.chr6             30728453 301 + 175400573 cacctcagcgtcctgagtagctgggatcataggcatgtaccaccatgcccggctaattttttg-tatttttagtagagatggggtttcac-catgttggcc------------------------------------------------------------aggctg--------------------gtctccaactcctggcctcaggtgatccacctacctcggcctcccaaagtactgggattacaggtataagccaccatgcccagcT---------------------GATGTCTCC--AACTTTCAAATGGTTCAGGGCCGGGTGCAG-----------tgcaatcc-cagcactttgggagg------------ccgaagcaggcggatcacc---tgaggtcgggagtttgagg-------ccaccttggcc
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     659076 300 +   2037526 cacctcagcgtcctgagtagctgggatcataggcatgtaccaccatgcccggctaattttttg-tatttttagtagagac-gggtttcac-catgttggcc------------------------------------------------------------aggctg--------------------gtctccaactcctggcctcaggtgatccgcctacctcggcctcccaaagtactgggattacaggtatgagccaccgtgcccagcc---------------------gatgtctcc--aactttcaaatggttcagGGCCGGGTGCAG-----------tgcaatcc-cagcactttgggagg------------ccgaagcaggcagatcacc---tgaggtcaggagtttgagg-------ccaccttggcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75326651 281 + 122973662 cacctcagcgtcctgagtagctgggatcataggcatgtaccaccatgcccagctaattttttg-tatttttagtagagacggggtttcgc-catgttggcc------------------------------------------------------------aagctg--------------------gtctccaactcctggcctcaggtgatccgcctaccttggcctcccaaagtactgggattacaggtgtgagccactgcacccagccCTGAATCATTTGAAAGTCGGAGACATCAGCTGGGCTTTCAAATGGTTCAGG-------------------------------CTGGACATTGG---------------------------------------TATgtcaggagtttgagg-------ccaccttggcc
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1     824772 313 +   1495729 cacctcagtctcctgagtagctgggatcataggcatgtaccaccatgcccggctaattttttgttatttttagtagagacagagtttcgc-catgttggcc------------------------------------------------------------aggctg--------------------gtctccaactcctgaccttgggtgatccgcctaccttggcctcccagagtactgggattgcaggcataagccactgtgcctggcT---------------------GATGTATCC--AACTTTCAAATGGTTCAGggctgggtgcagtggctcacacctgtaatgc-cagcactttgggagg------------ccgaggcaggcggatcacc---tgaggtcaggagtttgagg-------ccaccttggcc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      47292 313 -    811324 cacctcagtctcctgagtagctgggatcataggcatgtaccaccatgcccggctaattttttgttatttttagtagagacagagtttcgc-catgttggcc------------------------------------------------------------aggctg--------------------gtctccaactcctgacctcgggtgatccgcctacctcggcctcccagagtactgggattgcaggcataagccactgtgcctggtt---------------------gatgtatcc--aactttcaaatggttcagggctgggtgcagtggctcacacctgtaatgc-cagcactttgggagg------------ccgaggcaggcggatcacc---tgaggtcaggagtttgagg-------ccaccttggcc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30077853 313 -  71996105 cacctcagtctcctgagtagctgggatcataggcatgtaccaccatgcccggctaattttttgttatttttagtagagacagagtttcgc-catgttggcc------------------------------------------------------------aggctg--------------------gtctccaactcctgacctcaggtgatccgcctacctcggcctcccagagtactgggattgcaggcataagccactgtgcccggct---------------------gatgtatcc--aactttcaaatggttcagggctgggtgcagtggctcacacctgtaatgc-cagcactttgggagg------------ccgaggcaggtggatcacc---tgaggtcaggagtttgagg-------ccaccttggcc
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550           690513 407 +  18854210 tgtctcagcctccctagtagctgggactacagccatctgccataatgcccagctaatttttc--tatttttagtacagacagggtcttgctcttgctggtcttgaactcctttttttttttttttgtaaagacagagttttactttgtccccctcggtagagagctgtggcatcacagctcacagcaacctccaacacctgggcttaggcaattctcttgcctcagcctcccaattagctgggactacaggcacctgccacaaagcccggct---------------------attttttgg--ttgttgcagtttggccggggctgggtttga--------acctgccaccctcagtatatggggctggcgccctactcactgagccacaggtgccgccccttgaactcctgagctcaaggaatccttccaccttggcc
i otoGar3.GL873550         C 0 I 180
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e macFas5.chr4             30525657 4067 - 170955103 I
e rheMac8.chr4             31238228 2516 + 172585720 I
e panPan2.chr6             31149801 3230 + 173848474 I

a score=358548.000000
s hg38.chr6_GL000254v2_alt  1883091 192 +   4827813 aacg----tggtgtaatctcgtctccactaaaaatacaaaaattagccaggcatggtggtgcacacctgtagtcccagctaatggggaggctgaggcaagagaatcacttgaacccgggaggcagaggttgcagtgaaccgagattgcaccactgcactccaacctgggtgacagagcaaaactccatctcaaaaa
s panTro5.chr6             30728754 192 + 175400573 aacg----tggtgtaatctcgtctccactaaaaatacaaaaattagccaggcatggtggtgcacacctgtagtcccagctaatggggaggctgaggcaagagaatcacttgaacccgggaggcagaggttgcagtgaaccaagattgcaccactgcactccaacctgggtgacagagcaaaactccatctcaaaaa
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     659376 191 +   2037526 aa-g----tggtgtaatctcgtctccactaaaaatacaaaaattagccaggcatggtggtgcacacctgtagtcccagctaatggggaggctgaggcaagagaatcacttgaacccgggaggcagaggttgcagtgaaccaagattgcaccactgcactccaacctgggtgacagagcaaaactccatctcaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75326932 192 + 122973662 aaca----tggtgtaatcttgtctttactaaaagtacaaaaattagccaggcatggtggtgtatacctgtagtcccagctaatggggaggctgaggcaagagaatcacttgaacctgggaggcagaggttgcagtgaaccaagattgcaccactgcactccaacctgggtgacagagcaaaactccatctcaaaaa
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1     825085 196 +   1495729 aacaaacttggtgtaatcttgtctctactaaaaatacaaaaattagccaggcatggtggtgcacacctgcagttccagctactggggaggctgaggcaagagaatcgcttgaacccaggaggcagaggttgcagtgaaccaagattgcaccactgcactccaacctgggtgacagagcaagactccatctcaaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      47605 196 -    811324 aacaaacttggtgtaatcttgtctctactaaaaatacaaaaattagccaggcatggtggtgcacacctgtagttccagctactggggaggctgaggcaagagaatcacttgaacccaggaggcagaggttgcagtgaaccaagattgcaccactgcactccaacctgggtgacagagcaagactccatctcaaaaa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30078166 196 -  71996105 aacaaacttggtgtaatcttgtctctactaaaaatacaaaaattagccaggcatggtggtgcacacctgtagttccagctactggggaggctgaggcaagagaatcacttgaacccaggaggcagaggttgcagtgaaccaagattgcaccactgcactccaacctgggtgacagagcaagactccatctcaaaaa
i chlSab2.chr17            C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           690920 180 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e macFas5.chr4             30525657 4067 - 170955103 I
e rheMac8.chr4             31238228 2516 + 172585720 I
e panPan2.chr6             31149801 3230 + 173848474 I

a score=9573.000000
s hg38.chr6_GL000254v2_alt  1883283 10 +   4827813 --gaaaaaaaaa
s panTro5.chr6             30728946 10 + 175400573 --gaaaaaaaaa
i panTro5.chr6             C 0 I 1
s gorGor5.CYUI01015528v1     659567 10 +   2037526 --gaaaaaaaaa
i gorGor5.CYUI01015528v1   C 0 I 2
s nomLeu3.chr1a            75327124 10 + 122973662 --aaaaaaaaaa
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012012100v1     825281 10 +   1495729 --aaaaaaaaaa
i macNem1.NW_012012100v1   C 0 I 778
s cerAty1.NW_012002513v1      47801  7 -    811324 --aaaaaaa---
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30078362  7 -  71996105 --aaaaaaa---
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550           691100 10 +  18854210 Gggaaaaaat--
i otoGar3.GL873550         I 180 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e macFas5.chr4             30525657 4067 - 170955103 I
e rheMac8.chr4             31238228 2516 + 172585720 I
e panPan2.chr6             31149801 3230 + 173848474 I

a score=170760.000000
s hg38.chr6_GL000254v2_alt  1883293 108 +   4827813 GTTCA--AATGgttgagaaaagacaacacttgtatactgttggtaggaatgtaaattagtacagctattatggaaaac--tgtatggcggttcctcaaaaaactaaaaatag
s panTro5.chr6             30728957 108 + 175400573 GTTCA--AATGgttgagaaaagacaacacttgtatactgttggtaggaatgtaaattagtacagctattatggaaaac--tgtatggaggttcctcaaaaaactaaaaatag
i panTro5.chr6             I 1 C 0
s gorGor5.CYUI01015528v1     659579 108 +   2037526 GTTCA--AATGgttgagaaaagacaacacttgtatactgttggtaggaatgtaaattagtacagctattatggaaaac--tgtgtggaggtttctcaaaaaactaaaaatag
i gorGor5.CYUI01015528v1   I 2 C 0
s nomLeu3.chr1a            75327134 108 + 122973662 GTTCA--AATGgttgagaaatgacaacccttgtatactgttggtaagaatgtaaattagtacagctattatggaaaac--tgtatggaggttcctcaaaaaactaaaaatag
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002513v1      47808 110 -    811324 GTTCAATAATGgttgagaaaagacaagccttgtatactgttggtaggaatgtaaattagtacagctattatggaaaat--tgtatagaggtgcctcaaaaaactaaaaatga
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30078369 110 -  71996105 GTTCAATAATGgttgagaaaagacaagccttgtatactgttggtaggaatgtaaattagtacagctattatggtaaat--tgtatggaggtgcctcaaaaaactaaaaatga
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550           691110 100 +  18854210 -----------gttgagaaa-gagaacccttgtatactattagtgagaatgtaaattagtacagccattacgaaaaactgtgtatggaggttccttaaaaaactaaaaatag
i otoGar3.GL873550         C 0 I 126
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e macNem1.NW_012012100v1     825291 778 +   1495729 I
e macFas5.chr4             30525657 4067 - 170955103 I
e rheMac8.chr4             31238228 2516 + 172585720 I
e panPan2.chr6             31149801 3230 + 173848474 I

a score=255332.000000
s hg38.chr6_GL000254v2_alt  1883401 168 +   4827813 aattaccatatg-------------------------------gggctgggcacagtggctcacacctctaatcccatcattttgggaggccaaggtgagcggatcacctgaagtcgggagctcgagaccagcctggccaatatggtgaaaccccatttctactaaaaatacaaaaattagttgggcgtggtggtgggc
s panTro5.chr6             30729065 168 + 175400573 aattaccatatg-------------------------------gggctgggcacagtggctcacacctctaatcccatcattttgggaggccgaggtgagcggatcacctgaggtcgggagttcgagaccagcctggccaatatggtgaaaccccatttctactaaaaatacaaaaattagttgggcgtggtggtgggc
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     659687 168 +   2037526 aattaccatatg-------------------------------gggctgggcacagtggctcacacctctaatcccatcattttgggaggccgaggcgagcggatcacctgaggtcgggagttcgagaccagcctggccaatatggtgaaaccccatttctactaaaaatacaaaaattagttgggcgtggtggtgggc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75327242 168 + 122973662 aattaccatatg-------------------------------gggctgggcacagtggctcacacctctaatcccagcattttgggaggccgaggcgagtggatcacctgatgtcgggagttcgagaccagcctggccaatatggtgaaaccccatctctactaaaactacaaaaattagttgggcgtggtggtgggc
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002513v1      47918 168 -    811324 aattaccatatg-------------------------------gggctgggtgcagtggctcacacttgtaatcccagtattttgggaggccaaggcgggcagatcacctgaggtctggagttcgagaccagcctggtgaatatggtgaaaccccatctctactaaaaacacaaaaattagttgggcgtggtggtgggc
i cerAty1.NW_012002513v1   C 0 I 7
s chlSab2.chr17            30078479 168 -  71996105 atttaccatata-------------------------------gggctgggtgcagtggctcacacttgtaatcccagtattttgggaggccaaggcgggcagatcacctgaggtcgggagttcgagaccagcctggcgaatatggtgaaaccccatctctactaaaaacacaaaaattagttgggcgtggtgatgggc
i chlSab2.chr17            C 0 I 2
s otoGar3.GL873550           691336 190 +  18854210 aactaccatatgatccagcaatcctacttctgggtatttatccagaccaggagcagtggctcatgcctgtaatcctaacactctgggaggctgagccaggtggattgcttgagctcacaagtttgagaccagtctaattaa-aagcaagaaccccatctctactaaaaatagaaaaactagctgggcatgg--------
i otoGar3.GL873550         I 126 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e macNem1.NW_012012100v1     825291 778 +   1495729 I
e macFas5.chr4             30525657 4067 - 170955103 I
e rheMac8.chr4             31238228 2516 + 172585720 I
e panPan2.chr6             31149801 3230 + 173848474 I

a score=360.000000
s hg38.chr6_GL000254v2_alt  1883569 3 +   4827813 gcc
s panTro5.chr6             30729233 3 + 175400573 gcc
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     659855 3 +   2037526 gcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75327410 3 + 122973662 gcc
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17            30078649 1 -  71996105 g--
i chlSab2.chr17            I 2 I 5
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           691526 0 +  18854210 C
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e cerAty1.NW_012002513v1      48086 7 -    811324 I
e macNem1.NW_012012100v1     825291 778 +   1495729 I
e macFas5.chr4             30525657 4067 - 170955103 I
e rheMac8.chr4             31238228 2516 + 172585720 I
e panPan2.chr6             31149801 3230 + 173848474 I

a score=9686.000000
s hg38.chr6_GL000254v2_alt  1883572 16 +   4827813 tgtaatcccagctact
s panTro5.chr6             30729236 16 + 175400573 tgtaatcccagctact
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     659858 16 +   2037526 tgtaatcccagctact
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75327413 16 + 122973662 tgtaatcccagctact
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873550           691526  5 +  18854210 -----------ctact
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e chlSab2.chr17            30078650  5 -  71996105 I
e cerAty1.NW_012002513v1      48086  7 -    811324 I
e macNem1.NW_012012100v1     825291 778 +   1495729 I
e macFas5.chr4             30525657 4067 - 170955103 I
e rheMac8.chr4             31238228 2516 + 172585720 I
e panPan2.chr6             31149801 3230 + 173848474 I

a score=755.000000
s hg38.chr6_GL000254v2_alt  1883588 1 +   4827813 t
s panTro5.chr6             30729252 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     659874 1 +   2037526 t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75327429 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002513v1      48093 1 -    811324 t
i cerAty1.NW_012002513v1   I 7 C 0
s otoGar3.GL873550           691531 1 +  18854210 c
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e chlSab2.chr17            30078650 5 -  71996105 I
e macNem1.NW_012012100v1     825291 778 +   1495729 I
e macFas5.chr4             30525657 4067 - 170955103 I
e rheMac8.chr4             31238228 2516 + 172585720 I
e panPan2.chr6             31149801 3230 + 173848474 I

a score=179784.000000
s hg38.chr6_GL000254v2_alt  1883589 123 +   4827813 gagaggctgaggcaggagaaccgcttgaacccgggaggcggaggttgcagtgagctgagaccgtgccatcgcactccagcctgggcaacaagagtgaaactccatctcaaaaaa-aaaaaaaag
s panTro5.chr6             30729253 123 + 175400573 gagaggctgaggcaggagaaccgcttgaacccgggaggcggaggttgcagtgagctgagaccgtgccatcgcactccagcctgggcaacaagagtgaaactccatctcaaaaaa-aaaaaaaag
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     659875 123 +   2037526 gagaggctgaggcaggagaaccgcttgaacccaggaggcggaggttgcagtgagctgagaccgtgccatcgcactccagcctgggcaacaagagtgaaactccatctcaaaaaa-aaaaaaaaa
i gorGor5.CYUI01015528v1   C 0 I 6
s nomLeu3.chr1a            75327430 123 + 122973662 gagaggctgaggcaggagaaccgcttgaacccgggagacggaggttgcagtgagctgagaccgcgccattctactccagcctgggtgacaagagtgaaactccatctcaaaaaa-aaaaaaaaa
i nomLeu3.chr1a            C 0 I 1
s cerAty1.NW_012002513v1      48094 123 -    811324 ggaaggctgaggcaggagaaccgcttgaacctgggaggcgaaggttgcagtgaaccgagactgcgccattgcactccagcctgggtgacaagagtgaaattccgtctcaaaaaa-aaaaaaaaa
i cerAty1.NW_012002513v1   C 0 I 6
s chlSab2.chr17            30078655 124 -  71996105 gggaggctgaggcaggagaaccgcttgaacctgggaggcgaaggttgcagtgaaccgagactgcgccattgcactccagcctgggtgacaagagtgaaattctgtctcaaaaaataaaataaaa
i chlSab2.chr17            I 5 I 6
s otoGar3.GL873550           691532 113 +  18854210 tggaggctgaggaaggaggattgctagagcccaggagtttgaggttgctgtgagctatgatgatgtcacagcactctacccagtgcaaca------gaaatctgtctaaaaaaa-ataaa----
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e macNem1.NW_012012100v1     825291 778 +   1495729 I
e macFas5.chr4             30525657 4067 - 170955103 I
e rheMac8.chr4             31238228 2516 + 172585720 I
e panPan2.chr6             31149801 3230 + 173848474 I

a score=367497.000000
s hg38.chr6_GL000254v2_alt  1883712 181 +   4827813 aattaccatatgatccagcaatcttgcgtctgggtatttactaaagagatttgaaatcagtatgtcgaggagatacctgcactctcatgttcgctgcagcactattaaccacagtgaagttacatagtcaaaccgagtgttcatcagcagatgaatggataaagaaaatatggtatatagg
s panTro5.chr6             30729376 181 + 175400573 aattaccatatgatccagcaatcttgcgtctgggtatttactaaagagatttgaaatcagtatgtcgaggagatacctgcactctcatgttcgctgcagcactattaaccacagtgaagttacatagtcaaaccgagtgttcatcagcagatgaatggataaagaaaatatagtatatagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31153031 181 + 173848474 aattaccatatgatccagcaatcttgcatctgggtatttactaaagagatttgaaatcagtatgtcgaggagatacctgcactctcatgttcgctgcagcactattaaccacagtgaagttacatagtcaaaccgagtgttcatcagcagatgaatggataaagaaaatatagtatatagg
i panPan2.chr6             I 3230 C 0
s gorGor5.CYUI01015528v1     660004 181 +   2037526 aattaccatatgatccagcaatcttgcgtctgggtatttactaaagagatttgaaatcagtatgtcgaggagatacctgcactctcatgttcgctgcagcactattaaccacagtgaagttacatagtcaaaccgagtgttcatcagcagatgaatggataaagaaaatatggtatatagg
i gorGor5.CYUI01015528v1   I 6 C 0
s nomLeu3.chr1a            75327554 181 + 122973662 aattaccatatgatccagcaatcttgcgtctgggtatttactaaagatatttgaaatcggtatgttgaggagacacctgcactctcatgttcactgcagcactattaacaaaagtgaagttacatagtcaaaccgagtgttcatcagcagatgaatggataaagaaaatatggtatatagg
i nomLeu3.chr1a            I 1 C 0
s cerAty1.NW_012002513v1      48223 181 -    811324 aattaccatatgatccagtaatcttacttctgggtatttactaaagagatttgaaatcagtatgtcgaggagatacctgcactcccatattcactgcagcactattaacaacagttaagttacatcgtcaaaccgagtgttcagcagcagatgaatgaagaaagaaaatatggtatataag
i cerAty1.NW_012002513v1   I 6 C 0
s chlSab2.chr17            30078785 181 -  71996105 aattaccatatgatccagtaatcttacttctgggtatttactaaagagatttgaaatcagtatgtcgaggagatacctgcactcccatattcactgcagcactattaacaacagttaagttacatagtcaaaccgagtgtttatcagcagatgaatgaagaaagaaaatatggtatatagg
i chlSab2.chr17            I 6 C 0
s otoGar3.GL873550           691645 131 +  18854210 -----------------------------------------------gatttgaaatcagtatgtcaaagagacgtttgtactcccaggttcactgcaacactattaataatagtcaaattatggaaatgacctaagtgtt---caacagatgaataaattttaaaaatacggtatatatg
i otoGar3.GL873550         C 0 I 164
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e macNem1.NW_012012100v1     825291 778 +   1495729 I
e macFas5.chr4             30525657 4067 - 170955103 I
e rheMac8.chr4             31238228 2516 + 172585720 I

a score=290533.000000
s hg38.chr6_GL000254v2_alt  1883893 163 +   4827813 ccgggcgcagtggctcaagcctgtaatcccagcactttgggaggtcgaggcaggcggatcacgaggtcaggatatcgagagcatcctggctaacacggtgaaaccccatctctactaaaagtac-aaaagaattagctgggcgtggtggcaggcgcctgtagtc
s panTro5.chr6             30729557 163 + 175400573 ccgggcgcagtggctcatgcctgtaatcccagcactttgggaggtcgaggcaggcggatcacgaggtcaggatatcgagagcatcctggctaacacggtgaaaccccatctctactaaaagtac-aaaagaattagctgggcatggtggcaggcgcctgtagtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31153212 163 + 173848474 ccgggcgcagtggctcatgcctgtaatcccagcactttgggaggtcgaggcaggcggatcacgaggtcaggatatcgagagcatcctggctaacacggtgaaaccccatctctactaaaagtac-aaaagaattagctgggcatggtggcaggcgcctgtagtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     660185 163 +   2037526 ccgggcgcagtggctcatgcctgtaatcccagcactttgggaggtcgaggcaggcggatcacgaggtcaggatatcgagagcatcctggctaacacggtgaaaccccatctctactaaaagtac-aaaagaattagctaggcgtggtggcaggcgcctgtagtc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75327735 163 + 122973662 ccgggcgcagtggctcatgcctgtaattccagcactttgggaggtcgaggcaggcggatcacgaggtcaggatatcgagaacatcctggctaacacggtgaaatcccgtctctactaaaaatgc-aaaaaaattagccgggcatggtggcaggcgcctgtagtc
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002513v1      48404 164 -    811324 ccaggcgcagtggctcatgcctgtaatcccagcactttgggaggtcgaggtgggtggatcatgatgtcaggagattgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaaaattagctaggtatggtggtgggcgcctgtagtc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30078966 164 -  71996105 ccaggcgcggtggctcatgcctgtaatcccagcactttgggaggtcgaggtgggtggatcatgatgtcaggagattgagaccatcctggctaacatggtgaaaccccgtctctactataaatacaaaaaaaattagctaggtatggtggtgggcgcctgtagtc
i chlSab2.chr17            C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           691776 164 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e macNem1.NW_012012100v1     825291 778 +   1495729 I
e macFas5.chr4             30525657 4067 - 170955103 I
e rheMac8.chr4             31238228 2516 + 172585720 I

a score=237795.000000
s hg38.chr6_GL000254v2_alt  1884056 145 +   4827813 ccagctactctggaggctgaggcaggagaatcacttcaacctgggaggcggagtttgcagtgagctgagattgcaccagtgcactccaacctgggtgacagagcaagactccgtctc----aaaaaaaaaaaaaaa------------------------------------------------------------------------------------------aaaagaa--agaaag
s panTro5.chr6             30729720 141 + 175400573 ccagctactctggaggctgaggcaggagaatcacttcaacctgggaggcggagtttgcagtgagctgagattgcaccagtgcactccaacctgggtgacagagcgagactccgtctc----aaaaaaaaaaaaaaa----------------------------------------------------------------------------------------------gaa--agaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31153375 145 + 173848474 ccagctactctggaggctgaggcaggagaatcacttcaacctgggaggcggagtttgcagtgagctgagattgcaccagtgcactccaacctgggtgacagagcgagactccgtctc----aaaaaaaaaaagaaa------------------------------------------------------------------------------------------gaaagaa--agaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     660348 142 +   2037526 ccagctactctggaggctgaggcaggagaatcacttcaacctgggaggcggagtttgcagtgagctgagattgcaccagtgcactccaacctgggtgacagagcgagactccgtctc----aaaaaaaaaaaaaaa---------------------------------------------------------------------------------------------agaa--agaaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75327898 235 + 122973662 ccagctacttgggaggctgaggcaggagaatcacttgaacgtgggaggtggagcttgcagtgagccgagattgcgccgatgcactccaacctgggcgacagagcaagactccgtctc----agaaaaaaaaagaaagaaaggaaaagaaagaaagaagaaagaaagaaagaagaaagaaagaagaaagaaaagaaagagaaagaaagaaagaaagaaagaaagaaagaaagaa--agaaag
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002513v1      48568 144 -    811324 ccagctactcgagaagctgaggcagaagaacagcgtgaatccgggaggcagagcttgcagtgagccgagattgcgccactgcactccagcctgggtgacagagcaagactccatctcgaaaaaaaaaaaaaaaaaa-----------------------------------------------------------------------------------------------ac--agaaag
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30079130 140 -  71996105 ccagctactcgagaagctgaggcagaagaacagcgtgaacccgggaggcagagcttgcagtgagccgagattgtgccactgcacttcagcctgggtgacagagcaagactccatctc----aaaaaaaaaaaaaaa-----------------------------------------------------------------------------------------------cc--agaaag
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550           691940 136 +  18854210 ccaggtgttgtggcgcctg--------gactcacttgagcccaggagttggaggttgctgtgagctgtgat---gccatagcactctacccagggggatagcttgaggctctgtcta----aaaaaaaaaaaaatg------------------------------------------------------------------------------------------gatggaatcagaaaa
i otoGar3.GL873550         I 164 I 243
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e macNem1.NW_012012100v1     825291 778 +   1495729 I
e macFas5.chr4             30525657 4067 - 170955103 I
e rheMac8.chr4             31238228 2516 + 172585720 I

a score=265971.000000
s hg38.chr6_GL000254v2_alt  1884201 156 +   4827813 aaagaaaatatgg-----------tatatataccgtgga----------------------------------------atgctattcagcctttaaaaagaaattttgtcatttgagacagcgttaatggaattggagaacattatgctgagtgaagtaagccaggcacagaaagacaaatactgtatgttctcacttataagtgg
s panTro5.chr6             30729861 156 + 175400573 aaagaaaatatgg-----------tatatataccgtgga----------------------------------------atgctattcagcctttaaaaagaaattttgtcatttgagacagcgttaatggaattggagaacattatgctaagtgaagtaagccaggcacagaaagacaaatactttatgttctcacttataagtgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31153520 156 + 173848474 aaagaaaatatgg-----------tatatataccgtgga----------------------------------------atgctattcagcctttaaaaagaaattttgtcatttgagacagcgttaatggaattggagaacattatgctaagtgaagtaagccaggcacagaaagacaaatactttatgttctcacttataagtgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     660490 156 +   2037526 aaagaaaatatgg-----------tatatataccgtgga----------------------------------------atgctattcagcctttaaaaagaaattttgtcatttgagacagcgttaatggaattggagaacattatgctaagtgaagtaagccaggcacagaaagacaaatactgtatgttctcacttataagtgg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75328133 207 + 122973662 aaagaaaagaaagGtatatttatatatttatatagtaaatttatatttatatatttatataataaatttatatatttatataatattcagcctttaaaaagaaattttgtcatttgagacagcgttaatggaattggagaacgttatgctaagtgaagtaagccaggcacagaaagacaaatactgtatgttctcacttataagtgg
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002513v1      48712 155 -    811324 aaagaaaatatgg-----------tatatatactatgga----------------------------------------atgctattcagtctttaaaaagaaattttgtcatttgagacagcattaatggaattggagaacattatgctaagtgaagtaagccaggcacagaaagacaaat-ctgtatgttctcacttataagacg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30079270 155 -  71996105 aaagaaaatatgg-----------tatatataccgtgga----------------------------------------atgctattgagtctttaaaaagaaattttgtcatttgagacagcattaatggaattggagaacattatgctaagtgaagtaagccaggcacagaaagacaaat-ctgtatgttctcacttataagtcg
i chlSab2.chr17            C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e otoGar3.GL873550           692076 243 +  18854210 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e macNem1.NW_012012100v1     825291 778 +   1495729 I
e macFas5.chr4             30525657 4067 - 170955103 I
e rheMac8.chr4             31238228 2516 + 172585720 I

a score=504889.000000
s hg38.chr6_GL000254v2_alt  1884357 258 +   4827813 aatctaaaacaatcgaacttaaaggaggagagagcagaatagtagttaccagaggctgggggtctggggtaaatggggatatgatggttaaaggttacaaagcttc-attggactggaaaaataagcttt--------------------------------------tctttttctttgagatatactgcacagcaaagtgaatatagtaaataat----tcttggacatttcataag-tgttgag-ggtaaatatctttt-------------------------ttacat-----------------ttttaacatattccctcc-----tctgaatgtagagagta
s panTro5.chr6             30730017 258 + 175400573 aatctaaaacaattgaacttaaaggaggagagagcagaatagtagttaccagaggctgggggtctgggggaaatggggatatgatggttaaaggttacaaagcttc-attggactggaaaaataagcttt--------------------------------------tctttttctttgagatatactgcacagcaaagtgaatatagtaaataat----tcttgtacatttcataag-tgttgag-ggtaaatatctttt-------------------------ttacat-----------------ttttaacatgttccctcc-----tctgaatgtagagagta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31153676 258 + 173848474 aatctaaaacaattgaacttaaaggaggagagagcagaatagtagttaccagaggctgggggtctgggggaaatggggatatgatggttaaaggttacaaagcttc-attggactggaaaaataagcttt--------------------------------------tctttttctttgagatatactgcacagcaaagtgaatatagtaaataat----tcttgtacatttcataag-tgttgag-ggtaaatATCTTTT-------------------------TTACAT-----------------TTTTAACATGTTCCCTCC-----TCTGAATGTagagagta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     660646 258 +   2037526 aatctaaaacaattgaacttaaaggaggagagagcagaatagtagttaccagaggctgggggtctgggggaaatggggatatgatggttaaagggtacaaagcttc-attggactggaaaaataagcttt--------------------------------------tctttttctttgagatatactgcacagcaaagtgaatatagtaaataat----tcttgtacatttcataag-tgttgag-ggtaaatATCTTTT-------------------------TTACAT-----------------TTTTAACATGTTCCCTCC-----TCTGAATGTagagagta
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75328340 257 + 122973662 aatctaaaacaattgaactcaaaggaggagagagtagaatagtggttaccagaggctgggggtctgggggaaat-gggatatgatggttaaagggtacaaagcttc-attggactggaaaaataagcttt--------------------------------------tctttttctttgagatatattgcacagcaaagtgaatatagtaaataat----tcttgtacatttcagaag-tgttgag-ggtaaatatctttc-------------------------ttacat-----------------ttttaacatgttccctcc-----tctgaatgtagagagta
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002513v1      48867 263 -    811324 aatctaaaacaattgaactcaaaggaagagagagtagaatagtggttaccagagactgggggtctgggggaaatggggatatgttggtcaaagggtacaaagcttc-actggacgggaaaaataaacttt--------------------------------------tctttttctttaagatatattgcatagcaaagttaatacagcaaataat----tcttgtacatttcaaaag-tgttgag-ggtaaatatcttct-------------------------ttacat-----------------ttttaacttttttccctcctctatctgaatgtagagagta
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30079425 263 -  71996105 aatctaaaacaatcgaactcaaaggaagagagagtagaatagtggttaccagagactgggggtctgggggaaatggggatatgttggtcaaagggtacaaagcttc-actggactggaaaaataagcttt--------------------------------------tctttttctttgagatatattgcatagcaaagttaatacagtaaataat----tcttgtacatttcaaagg-tgttgag-ggtaaatATCTTCT-------------------------TTACAT-----------------TTTTAATTTTTTTCCCTCCTCTATCTGAATGTagagagta
i chlSab2.chr17            C 0 C 0
s otoGar3.GL873550           692319 341 +  18854210 aatacaaaacaattgaactcaaag---cagaaagtagaatggtggttacca-aggctggggaagtgggagaaatggagagataacggccaaagggtacaaagcctcaactggacaggagaaatagggtttTTTTCTTTGTgatataaaacaggacaggagaaatagggtttttttctttgtgatatatagtgcaggatgatgaatacaataaataataaggtactgtacatttcaaaaattgctaagagGTgggcggctcctgtggctcaatggggtagggcgctggtcccatatgccggaggtggcaggttcaaacccagccccggc-----taaaaatggcaaaaaTA
i otoGar3.GL873550         I 243 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e colAng1.NW_012115577v1     743530 6352 -   1829203 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e macNem1.NW_012012100v1     825291 778 +   1495729 I
e macFas5.chr4             30525657 4067 - 170955103 I
e rheMac8.chr4             31238228 2516 + 172585720 I

a score=49768.000000
s hg38.chr6_GL000254v2_alt  1884615 21 +   4827813 ----aatttcaaacattctcaccac
s panTro5.chr6             30730275 21 + 175400573 ----aatttcaaacattctcaccac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31153934 21 + 173848474 ----aatttcaaacattctcaccac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     660904 21 +   2037526 ----aatttcaaacattctcaccac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75328597 21 + 122973662 ----aatttcaaacattctcaccac
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012002513v1      49130 21 -    811324 ----aatttcaaacattctcaccac
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30079688 21 -  71996105 ----aatttcaaacattctcaccac
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     749882 21 -   1829203 ----Aatttcaaacattctcaccac
i colAng1.NW_012115577v1   I 6352 C 0
s otoGar3.GL873550           692660 19 +  18854210 AATAAAT---AAAGCTTATCTT---
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e macNem1.NW_012012100v1     825291 778 +   1495729 I
e macFas5.chr4             30525657 4067 - 170955103 I
e rheMac8.chr4             31238228 2516 + 172585720 I

a score=39011.000000
s hg38.chr6_GL000254v2_alt  1884636 17 +   4827813 -aaaaaaagtaagtattt
s panTro5.chr6             30730296 17 + 175400573 -aaaaaaagtaagtattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31153955 17 + 173848474 -aaaaaaagtaagtattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     660925 17 +   2037526 -aaaaaaagtaagtattt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75328618 17 + 122973662 -aaaaaaagtaagtattt
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30529724 14 - 170955103 -aaaaaaaaaaaaaa---
i macFas5.chr4             I 4067 C 0
s cerAty1.NW_012002513v1      49151 16 -    811324 --aaaaaagtaagtattt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30079709 16 -  71996105 --aaaaaagtaagtattt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     749903 17 -   1829203 -aaaaaaagtaagtattt
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           692679 17 +  18854210 AAAAAAAAAAAATTGCT-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I
e macNem1.NW_012012100v1     825291 778 +   1495729 I
e rheMac8.chr4             31238228 2516 + 172585720 I

a score=1546763.000000
s hg38.chr6_GL000254v2_alt  1884653 295 +   4827813 aaaagtgatagatgttgggccgggtgcagtggctcacgtctgtaatcccagcactttgggaggtggaggtgggtggatcacctgaggtcaggagttggagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcatggtggcggacgcctgtaatgccagctactcgggaggctgaggcagaagaatcacttgaacccgggaggcggaagttgcagtgagccgagattgcaccactgcactccagcctgggcaacaagagtgaaactc
s panTro5.chr6             30730313 295 + 175400573 aaaagtgatagatgttgggccgggcgcagtggctcacgtctgtaatcccagcactttgggaggtggaagtgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcatggtggcggacgcctgtaatgccagctactcaagaggctgaggcagaagaatcacttgaacccaggaggcggaagttgcagtgagccgagattgcaccactgcactccagcctgggcaacaagagtgaaactc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31153972 295 + 173848474 aaaagtgatagatgttgggccgggcgcagtggctcacgtctgtaatcccagcactttgggaggtggaagtgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcatggtggcggacgcctgtaatgccagctactcaagaggctgaggcagaagaatcacttgaacccaggaggcggaagttgcagtgagccgagattgcaccactgcactccagcctgggcaacaagagtgaaactc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     660942 295 +   2037526 aaaagtgatagatgttgggccgggcgcagtggctcacatctgtaatcccagcactttgggaggcggaggtgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcatggtggcggacgcctgtaatgccagctactcaggaggctgaggcagaagaatcacttgaacccgggaggcagaagttgcagtgggccgagattgcaccactgcactccagcctgggcaacaagagtgaaactc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75328635 295 + 122973662 aaaagtgatagatgttgggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggcggaggtgggtggatcacctgaggtcaggagttcgagaacagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaattagccgggcgtggtggcagacgcctgtaatcccagctactcgggaggctgaggcagaagaatcacttgaacccaggaggcggaagttgcagtgagccgagattgcaccattgcactccagcctgggcgacaagagtgaaactc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31240744 295 + 172585720 aaaagtgacagatgttgggccgggcgcagtggctcacacctgtaatcctagcactttgggaggcagcggtgggtggaccacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccacctctactaaaaacacaaaaaattagccgggcgtggtggtggatgcctgtaatcccagctacttgggaggctgaggcagaagaatcacttgaacccaggaggtggaagttgcagtgagccgagattgcaccattgcactccagcctgggcaacaagagctaaactc
i rheMac8.chr4             I 2516 C 0
s macFas5.chr4             30529738 295 - 170955103 aaaagtgacagatgttgggccgggcgcagtggctcacacctgtaatcctagcactttgggaggcagcggtgggtggaccacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccacctctactaaaaacacaaaaaattagccgggcgtggtggcggatgcctgtaatcccagctacttgggaggctgaggcagaagaatcacttgaacccaggaggtggaagttgcagtgagccgagattgcaccattgcactccagcctgggcaacaagagctaaactc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     826069 295 +   1495729 aaaagtgacagatgttgggccgggcgcagtggctcacacctgtaatcctagcactttgggaggcagcggtgggtggaccacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccacctctactaaaaacacaaaaaattagccgggcgtggtggcggatgcctgtaatcccagctacttgggaggctgaggcagaagaatcacttgaacccacgaggtggaagttgcagtgagccgagattgcaccattgcactccagcctgggcaacaagagctaaactc
i macNem1.NW_012012100v1   I 778 C 0
s cerAty1.NW_012002513v1      49167 295 -    811324 aaaagtgatagatgttgggccgggcacagtggctcacacctgtaatcctagcactttgggaggcagcagtgggtggactacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccacctctactaaaaacacaaaaaattagccgggcgtggtggtggatgcctgtaatcccagctacttgggaggctgaggcagaagaatcacttgaacccaggaggtggaagttgcagtgagtcgagattgcaccattgcactccagcctgggcaacaagagctaaactc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30079725 295 -  71996105 aaaagtgatagatgttgggccgggcgcagtggctcacacctgtaatcctagcactttgggaggcagtggtgggtggaccacccgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccacctctactaaaaacacaaaaaattagccgggcgtggtggcggatgcctgtaatcccagctacttgggaggctgaggcagaagaatggcgtgaacccaggaggtggaagttgcagtgagccgagattgcaccattgcactccagcctgggcaacaagagctaaactc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     749920 294 -   1829203 aaaagtgatagatgttgggccaggcgcagtggctcacacctgtaatcctagcactttgggaggcagcggtgggtggaccacctgaggtcaggagttcgagaccagccttgccaacatggtgaaaccccacctctact-aaaacacaaaaaattagccaggcgtggtggcggatgcctgtaatcccagctacttgggaggctgaggcagaagaatcacttgaacccaggaggtggaagttgcagtgagccgagattgcaccattgcactccagcctgggcaacaagagctaaactc
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           692696 249 +  18854210 --AAG-----------AGGATgggtgcggtggctcacgcctataatcctagcactctgggaggccaaggcaggtggattgcctttgct---------gagaccagcctgagcaa------gagagcccatttct-------------aaaattagccgggccttgtggcaggcacctgtagtcccagctacttgggagg-tgaggcaagagaatcacttaagcccaagagtttgagattgttgtgagct---ataatgccacagcactctaccacgggtgacaa-agtgagactc
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e saiBol1.JH378327            69293 11032 -    750284 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I

a score=49766.000000
s hg38.chr6_GL000254v2_alt  1884948 12 +   4827813 catctcaaaaaa---------------------------------------------
s panTro5.chr6             30730608 12 + 175400573 cacctcaaaaaa---------------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31154267 12 + 173848474 catctcaaaaaa---------------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     661237 12 +   2037526 catctcaaaaaa---------------------------------------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75328930 12 + 122973662 cgtctcaaaaaa---------------------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31241039 12 + 172585720 cgtctcaaaaaa---------------------------------------------
i rheMac8.chr4             C 0 I 5
s macFas5.chr4             30530033 12 - 170955103 cgtctcaaaaaa---------------------------------------------
i macFas5.chr4             C 0 I 5
s macNem1.NW_012012100v1     826364 12 +   1495729 cgtctcaaaaaa---------------------------------------------
i macNem1.NW_012012100v1   C 0 I 5
s cerAty1.NW_012002513v1      49462 12 -    811324 catctcaaaaaa---------------------------------------------
i cerAty1.NW_012002513v1   C 0 I 10
s chlSab2.chr17            30080020 12 -  71996105 cgtctcaaaaaa---------------------------------------------
i chlSab2.chr17            C 0 I 10
s colAng1.NW_012115577v1     750214 12 -   1829203 cgtctcaaaaaa---------------------------------------------
i colAng1.NW_012115577v1   C 0 I 9
s saiBol1.JH378327            80325 12 -    750284 caccacaaaaaa---------------------------------------------
i saiBol1.JH378327         I 11032 C 0
s otoGar3.GL873550           692945 57 +  18854210 tgactcaaaaacaaaaaaaaattgctaagagagtacatttcaaatgttctcaccaca
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I
e manLeu1.NW_012106264v1      78186 8641 +    779361 I

a score=13390.000000
s hg38.chr6_GL000254v2_alt  1884960 2 +   4827813 aa
s panTro5.chr6             30730620 2 + 175400573 aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31154279 2 + 173848474 ga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     661249 2 +   2037526 aa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75328942 2 + 122973662 aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31241056 2 + 172585720 aa
i rheMac8.chr4             I 5 C 0
s macFas5.chr4             30530050 2 - 170955103 aa
i macFas5.chr4             I 5 C 0
s macNem1.NW_012012100v1     826381 2 +   1495729 aa
i macNem1.NW_012012100v1   I 5 C 0
s cerAty1.NW_012002513v1      49484 2 -    811324 aa
i cerAty1.NW_012002513v1   I 10 C 0
s chlSab2.chr17            30080042 2 -  71996105 aa
i chlSab2.chr17            I 10 C 0
s manLeu1.NW_012106264v1      86827 2 +    779361 AA
i manLeu1.NW_012106264v1   I 8641 C 0
s colAng1.NW_012115577v1     750235 2 -   1829203 aa
i colAng1.NW_012115577v1   I 9 C 0
s saiBol1.JH378327            80337 2 -    750284 ag
i saiBol1.JH378327         C 0 I 5
s otoGar3.GL873550           693002 2 +  18854210 aa
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e aotNan1.NW_018511496v1       4589 24194 -    566255 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I

a score=412591.000000
s hg38.chr6_GL000254v2_alt  1884962 57 +   4827813 aaaa-----gtga------tagatgttaatttgcttgatttaatcatcccacagtgt-attcatgaatc
s panTro5.chr6             30730622 59 + 175400573 aaaa---aagtga------tagatgttaatttgcttgatttaatcatcccacagtgt-attcatgaatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31154281 58 + 173848474 aaaa----agtga------tagatgttaatttgcttgatttaatcatcccacagtgt-attcatgaatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     661251 62 +   2037526 aaaaaaaaagtga------tagatgttaatttgcttgatttaatcattccacagtgt-attcatgaatc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75328944 53 + 122973662 aaaa-----gtga------tagatgtta----gcttgatttaatcatcccacagtgt-attcatgaatc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31241058 58 + 172585720 aaaa-----gtga------tagatgttaatgagatttatttaatcatctcacagtgtaattcatgaatc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30530052 58 - 170955103 aaaa-----gtga------tagatgttaatgagatttatttaatcatctcacagtgtaattcatgaatc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     826383 58 +   1495729 aaaa-----gtga------tagatgttaatgagatttatttaatcatctcacagtgtaattcatgaatc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      49486 58 -    811324 aaaa-----gtga------tagatgttaatgagatttatttaatcatctcacagtgtaattcatgaatc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30080044 58 -  71996105 aaaa-----gtga------tagatgttaatgagatttatttaatcatctcacagtgtaattcatgaatc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      86829 58 +    779361 AAaa-----gtga------tagatgttaatgagatttatttaatcatctcacagtgtaattcatgaatc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     750237 58 -   1829203 aaaa-----gtga------tagatgttaatgagattgatttaatcatcccacagtgtaattcatgaatc
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            80344 57 -    750284 aaaa-----gtga------tagattttaattagcttgatttaatcatcctgtggtgt-attcatgaatc
i saiBol1.JH378327         I 5 C 0
s aotNan1.NW_018511496v1      28783 57 -    566255 aaaa-----gtga------tagatgttaattagcttgatttaatcatcctgtggtgt-attcatgaatc
i aotNan1.NW_018511496v1   I 24194 C 0
s otoGar3.GL873550           693004 63 +  18854210 aaaa-----ttaagtattttaagtgataattagcttgatttaattattccacagtga-attcataaatc
i otoGar3.GL873550         C 0 I 273
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I

a score=498194.000000
s hg38.chr6_GL000254v2_alt  1885019 57 +   4827813 ataacatcactttgtacgccataaatatatacaactataatttgccaattT-ACAATT
s panTro5.chr6             30730681 57 + 175400573 ataacatcactttgtaccccataaatatatacaactataatttgccaattT-ACAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31154339 57 + 173848474 ataacatcactttgtaccccataaatatatacaactataatttgccaattt-acaatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     661313 57 +   2037526 ataacatcactttgtaccccataaatatatacaactataatttgccaattt-acaatt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75328997 58 + 122973662 ataacatcagtttgtaccccataaatatatacaactataatttgccaatttaacaatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31241116 57 + 172585720 ataacatcactttgtactccataaatatatacaactataatttgccaattt-acaatT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30530110 57 - 170955103 ataacatcactttgtactccataaatatatacaactataatttgccaattt-acaatT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     826441 57 +   1495729 ataacattactttgtactccataaatatatacaactataatttgccaattt-acaatT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      49544 57 -    811324 ataacatcactttgtactccataaatatatacaactataatttgccaattt-acaatT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30080102 57 -  71996105 ataacatcactttgtactccataaatatatacaactataatttgccaattt-acaatT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      86887 57 +    779361 ataacatcactttgtactccataaatatatacaactataatttgccaattt-acaatT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     750295 57 -   1829203 ataacatcactttgtactccataaatatatacaactataatttgccaattt-acaatt
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327            80401 57 -    750284 ataacattactttgtaccccatacatatatacaactatattctgccaattt-acaatt
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      28840 57 -    566255 gtaacattactttgtaccccgtaaatatatacaattataatctgccaattt-acaatt
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           693340 55 +  18854210 ATAACATCAC-TTATACCCCATAAATATGTA-AACTATAATTTGTCAACTT-ACAATT
i otoGar3.GL873550         I 273 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I
e calJac3.chr4             30900681 8797 + 171630274 I

a score=267574.000000
s hg38.chr6_GL000254v2_alt  1885076 39 +   4827813 A-AAGGTTAAAATTTTTAA---AAATAAAAGGTAATGAC-AACA-
s panTro5.chr6             30730738 39 + 175400573 A-AAGGTTAAAATTTTTAA---AAATAAAAGGTAATGAC-AACA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31154396 38 + 173848474 a-aaGGTTAAAATTTTTAA---AAATAAAAGGTAATGAC-AAC--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     661370 38 +   2037526 a-aaGGTTAAAATTTTTAA---AAATAAAAGGTAATGAC-AAC--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75329055 39 + 122973662 a-aaGGTTAAAGTTTTTAA---AAATAAAAGGTAATGAC-AACA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31241173 39 + 172585720 ATAAGGTTAAAATTTTTAA---AAATAAAAGGTAACGAC-AAC--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30530167 39 - 170955103 ATAAGGTTAAAATTTTTAA---AAATAAAAGGTAACGAC-AAC--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     826498 39 +   1495729 ATAAGGTTAAAATTTTTAA---AAATAAAAGGTAACGAC-AAC--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      49601 39 -    811324 ATAAGGTTAAAATTTTTAA---AAATAAAAGGTAACGAC-AAC--
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30080159 39 -  71996105 ATAAGGTTAAAATTTTTAA---AAATAAAAGGTAATGAC-AAC--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      86944 39 +    779361 ATAAGGTTAAAATTTTAAA---AAATAAAAGGTAACGAC-AAC--
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     750352 38 -   1829203 a-aaGGTTAAAATTTTTAA---AAATAAAAGGCAATGAC-AAT--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30909478 35 + 171630274 -AAAGattaaaatttttaa---aaataaaaGGTAACAAC------
i calJac3.chr4             I 8797 C 0
s saiBol1.JH378327            80458 35 -    750284 -aaaGATTAAACTTTAAAA---AAACAAAAGATAACAAC------
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      28897 36 -    566255 -aaaGATTAAAATTTTAAG---AAATAAGAGGTAAcaaca-----
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           693395 42 +  18854210 -AAAGATTACAATTTAGAAAATAAATAAAAGGTAAAAAC-AAC-A
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I
e cebCap1.NW_016107755v1    1323262 5754 -   1771730 I

a score=938056.000000
s hg38.chr6_GL000254v2_alt  1885115  98 +   4827813 AAAAAAATGGATAAGTAGACAGAAAAATCGATTAATACAGAAGCT-GGCAAAAACTAGtaaagcaaatatggcaaaatg------------------------------------------------tagaatttgttgaatctttc
s panTro5.chr6             30730777  98 + 175400573 AAAAAAATGGATAAGTAGACAGAAAAATCGATTAATACAGAAGCT-GGCAAAAACTAGtaaagcaaatatggcaaaatg------------------------------------------------tagaatttgttgaatctttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31154434  98 + 173848474 AAAAAAATGGATAAGTAGACAGAAAAATCGATTAATACAGAAGCT-GGCAAAAACTAGtaaagcaaatatggcaaaatg------------------------------------------------tagaatttgttgaatctttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     661408  97 +   2037526 -AAAAAATGGATAAGTAGACAGAAAAATCGATGAATACAGAAGCT-GGCAAAAACTAGTACAGCAAATATGGCAAAATG------------------------------------------------TAGAATTTGTTGAATCTTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75329094  98 + 122973662 AAAAAAATAGATAAGTagacagaaaaatcgatgaatacagaagtt-ggtaaaaactagtaaagcaaatatggcaaaatg------------------------------------------------tagaatgtgttgaatattcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31241212  94 + 172585720 AAAAAAATTGGTAAGT----AGAAAAATCGATGAATACAGAAGCT-GGTAAAAACTAGTAAGGCGAATATGGCAAAATG------------------------------------------------TAGAATGTGTTGAATCTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30530206  94 - 170955103 AAAAAAATTGGTAAGT----AGAAAAATCGATGAATACAGAAGCT-GGTAAAAACTAGTAAGGCGAATATGGCAAAATG------------------------------------------------TAGAATGTGTTGAATCTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     826537  94 +   1495729 AAAAAAATTGGTAAGT----AGAAAAATCGATGAATACAGAAGCT-GGTAAAAACTAGTAAGGCGAATATGGCAAAATG------------------------------------------------TAGAATGTGTTGAATCTTTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      49640  94 -    811324 AAAAAAAATGGTAAGT----AGAAAAATCGATGAATACAGAAGCT-GGTAAAAACTAGTAAGGCGAATATGGCAAAATG------------------------------------------------TAGAATGTGTTGAATCTTTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30080198  94 -  71996105 AAAAAAATTGGTAAGT----AGAAAAATCGATGAATACAGAAGCT-GGTAAAAACTAGTAAGGCAAATATGGCAAAATG------------------------------------------------TAGAATGTGTTGAATCTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      86983  94 +    779361 AAAAAAAATGGTAAGT----AGAAAAATCGATGAATACAGAAGCT-GGTAAAAACTAGTAAGGCGAATATGGCAAAATG------------------------------------------------TAGAATGTGTTGAATCTTTC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     750390  94 -   1829203 AAAAAAATGGGTAAGT----AGAAAAATCGATGAATACAGAAGCT-GGTAAAAACTAGTAAGGCGAATATGGCAAAATG------------------------------------------------TAGAATGTGTTGAATCTTTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30909513  98 + 171630274 AAAAAAATGGATAAGTAGATAGAAAAATCGATGAATACAGAAGCT-GGTGAAAACTAGTAAAGCGAATATCGCAAAATG------------------------------------------------TAGAATTTGTTGAATATTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            80493  94 -    750284 AAAAAAGTGGA----TAGATAGAAAAATTGATGAATACAGAAGCT-GATGAAAACTGGtaaagcaaatatggcaaaatg------------------------------------------------tagaatttgttgaatcattg
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1329016  98 -   1771730 AAAAAAATGGATAAGTAGATAGAAAAATCGATGAATACAGAAGCT-GGTGAAAACTAGTAGAGCAAATATGGCAAAATG------------------------------------------------TAGAATTTGTTGAATCTTTG
i cebCap1.NW_016107755v1   I 5754 C 0
s aotNan1.NW_018511496v1      28933  97 -    566255 -aaaaaatggataagtagatagaaaaatcgatgaatacagaagct-ggtgaaaactagtaaagcaaatatggcaaaatg------------------------------------------------tagaatttgttgaatctttg
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           693437 139 +  18854210 AAAAATATAGGTAAGG--------AAACAGATGAGTATGTAAGATAAGTAGAGACTAGTAAAGCAAATACAGCAAAATGTTAGGATTTATTCAATCTTTTTCTCTTTTCTTTTTCAATCTTTTTCTCTAGAATATGTTGAATCTTTG
i otoGar3.GL873550         C 0 I 5
e mm10.chr17               58956779 36400 -  94987271 I
e proCoq1.NW_012149775v1     643543 33669 -   1411461 I

a score=512477.000000
s hg38.chr6_GL000254v2_alt  1885213 43 +   4827813 agtatttgggtgtttattgttctttt--tctatgttagaaatttt
s panTro5.chr6             30730875 43 + 175400573 agtatttgggtgtttattgttctttt--tctatgttagaaatttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31154532 43 + 173848474 agtatttgggtgtttattgttctttt--tctatgttagaaatttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     661505 43 +   2037526 AGTATTTGGGTGTTTATTGTTCTTTT--TCTATGTTAGAAATTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75329192 43 + 122973662 agtatttgggtgtttattgttctttt--tctatgttagaaatttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31241306 43 + 172585720 AGTATTTGGGTGTTTATTGTTCTTTT--TCTACGTTAGAAATTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30530300 43 - 170955103 AGTATTTGGGTGTTTATTGTTCTTTT--TCTACGTTAGAAATTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     826631 43 +   1495729 AGTATTTGGGTGTTTATTGTTCTTTT--TCTACGTTAGAAATTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      49734 43 -    811324 AGTATTTGGGTGTTTATTGTTCTTTT--TCTACGTTAGAAATTTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30080292 43 -  71996105 AGTATTTGGGTGTTTATTGTTCTTTT--TCTACGTTAGAAATTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      87077 43 +    779361 AGTATTTGGGTGTTTATTGTTCTTTT--TCTACGTTAGAAATTTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     750484 43 -   1829203 AGTATTTGGGTGTTTATTGTTCTTTT--TCTACGTTAGAAATTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30909611 43 + 171630274 AGTATTTGGGTGTTTATCGTTCTTTT--TCTATGTTAGAAttttt
i calJac3.chr4             C 0 I 300
s saiBol1.JH378327            80587 41 -    750284 agtatctgggtgtttattgt--tttt--tctatgttagaaatttt
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1329114 39 -   1771730 AGTATTTGGGTGTTTATT----TTTT--TCTATGTTAGAAATTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      29030 40 -    566255 agtatttgggtgtttattg---ttct--tctatgttagaaatttt
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     677212 45 -   1411461 AGTATTTGGGTATTTATTGTCCTTTTCCTCTGTGTTAGAAATTTT
i proCoq1.NW_012149775v1   I 33669 C 0
s otoGar3.GL873550           693581 45 +  18854210 AGTATTTGTGTGTTTAATGTCTTTTTCCTCTGTTTTAGAAAAGTT
i otoGar3.GL873550         I 5 C 0
e mm10.chr17               58956779 36400 -  94987271 I

a score=29223.000000
s hg38.chr6_GL000254v2_alt  1885256 2 +   4827813 tc
s panTro5.chr6             30730918 2 + 175400573 tc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31154575 2 + 173848474 tc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     661548 2 +   2037526 TC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75329235 2 + 122973662 tc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31241349 2 + 172585720 TC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30530343 2 - 170955103 TC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     826674 2 +   1495729 TC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      49777 2 -    811324 TC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30080335 2 -  71996105 TC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      87120 2 +    779361 TC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     750527 2 -   1829203 TC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30909954 2 + 171630274 TC
i calJac3.chr4             I 300 C 0
s saiBol1.JH378327            80628 2 -    750284 tc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1329153 2 -   1771730 TC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      29070 2 -    566255 tc
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     677257 2 -   1411461 TC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           693626 2 +  18854210 TC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I

a score=579281.000000
s hg38.chr6_GL000254v2_alt  1885258 54 +   4827813 aaa--------ataaaaaGTTGCAAATGATTTCCATATTATTCTGATTTTTACAC-AGTAACA
s panTro5.chr6             30730920 54 + 175400573 aaa--------ataaaaaGTTGCAAATGATTTCCATATTATTCTGATTTTTACAC-AGTAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31154577 54 + 173848474 aaa--------ataaaaaGTTGCAAATGATTTCCATATTATTCTGATTTTTACAC-AGTAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     661550 54 +   2037526 AAA--------ATAAAAAGTTGCAAATGATTTCCATATTATTCTGATTTTTACAC-AGTAACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75329237 54 + 122973662 aaa--------ataaaaaGTTGCAAACGATTTCCATATTATTCTGATTTTTACAC-AGTAACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31241351 51 + 172585720 AAA--------AT---AAGTTGCAAACAATTTCCATATTATTCTGATTTTTACAC-AGTAACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30530345 51 - 170955103 AAA--------AT---AAGTTGCAAACAATTTCCATATTATTCTGATTTTTACAC-AGTAACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     826676 51 +   1495729 AAA--------AT---AAGTTGCAAACAATTTCCATATTATTCTGATTTTTACAC-AGTAACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      49779 51 -    811324 AAA--------AT---AAGTTGCAAACAATTTCCATATTATTCTGATTTTTACAC-AGTAACA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30080337 51 -  71996105 AAA--------AT---AAGTTGCAAACAATTTCCATATTATTCTGATTTTTACAC-AGTAACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      87122 51 +    779361 AAA--------AT---AAGTTGCAAACAATTTCCATATTATTCTGATTTTTACAC-AGTAACA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     750529 51 -   1829203 AAA--------AT---AAGTTGCAAACAATTTCCATATTATTCTGATTTTTACAC-AGTAACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30909956 40 + 171630274 AAA--------ATAAAAAGTTGGA--------------AATTCTGATATTCACAC-AGTAACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            80630 54 -    750284 aaa--------aCAAAAAGTTGGAAACAATTTCCATATAATTCTGATATTTACAC-AGTAACA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1329155 54 -   1771730 AAA--------ACAAAAAGTTGGAAACAATTTCCATATTATTCTGATTTTTACAC-AGTAACA
i cebCap1.NW_016107755v1   C 0 I 342
s aotNan1.NW_018511496v1      29072 54 -    566255 aaa--------ataaaaagttggaaaCAATTTCCATATTATTCTGATTTTTACAT-AGTAACA
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     677259 63 -   1411461 AAAATATAATTATTATTAGGTGGAAACAATTTCCATATTAGTCTGATTTTTGCACAGTTAACA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           693628 35 +  18854210 AAA--------ATTAAAAGTTGGAAACAATTTCCAT--------------------GGTAACA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              369930 54 +  72498081 aat--------attaaaaGTTGGAAAGAATTTCCATATTATCCTAATTTTTACAC-AATAATG
i canFam3.chr12            N 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I

a score=29531.000000
s hg38.chr6_GL000254v2_alt  1885312 4 +   4827813 GAA---A
s panTro5.chr6             30730974 4 + 175400573 GAA---A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31154631 4 + 173848474 GAA---A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     661604 4 +   2037526 GAA---A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75329291 4 + 122973662 GAA---A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31241402 4 + 172585720 GAA---A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30530396 4 - 170955103 GAA---A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     826727 4 +   1495729 GAA---A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      49830 4 -    811324 GAA---A
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30080388 4 -  71996105 GAA---A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      87173 4 +    779361 GAA---A
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     750580 4 -   1829203 GAA---A
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30909996 7 + 171630274 GAATCTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            80684 7 -    750284 GAATCTA
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      29126 7 -    566255 GAATCTA
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     677322 3 -   1411461 -AA---A
i proCoq1.NW_012149775v1   C 0 I 4
s otoGar3.GL873550           693663 3 +  18854210 -AA---A
i otoGar3.GL873550         C 0 I 4
s canFam3.chr12              369984 4 +  72498081 GAA---G
i canFam3.chr12            C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e cebCap1.NW_016107755v1    1329209 342 -   1771730 I

a score=200470.000000
s hg38.chr6_GL000254v2_alt  1885316 15 +   4827813 ACATTCCTGGCTGCA
s panTro5.chr6             30730978 15 + 175400573 ACATTCCTGGCTGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31154635 15 + 173848474 ACATTCCTGGCTGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     661608 15 +   2037526 ACATTCCTGGCTGCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75329295 15 + 122973662 ACATTCCAGGCTGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31241406 15 + 172585720 ACATTCCAGGCTTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30530400 15 - 170955103 ACATTCCAGGCTTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     826731 15 +   1495729 ACATTCCAGGCTTCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      49834 15 -    811324 ACATTCCAGGCTTCA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30080392 15 -  71996105 ACATTCCAGGCTTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      87177 15 +    779361 ACATTCCAGGCTTCA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     750584 15 -   1829203 ACATTCCAGGCTTCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30910003 15 + 171630274 ACATTCCAGGCTGCA
i calJac3.chr4             C 0 I 5
s saiBol1.JH378327            80691 15 -    750284 ACATTCCAGGCTGCA
i saiBol1.JH378327         C 0 I 5
s aotNan1.NW_018511496v1      29133 15 -    566255 ACATTCCAGGCTGCA
i aotNan1.NW_018511496v1   C 0 I 317
s micMur3.chr6               645654 15 + 123392446 ACATTCCAGGCTGCA
i micMur3.chr6             N 0 C 0
s proCoq1.NW_012149775v1     677329 15 -   1411461 ACATTCCAGGCTGCA
i proCoq1.NW_012149775v1   I 4 C 0
s otoGar3.GL873550           693670 15 +  18854210 ACTTTCCAGGACTCA
i otoGar3.GL873550         I 4 C 0
s canFam3.chr12              369988 15 +  72498081 ACATTCCAGGATGCA
i canFam3.chr12            C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e cebCap1.NW_016107755v1    1329209 342 -   1771730 I

a score=79690.000000
s hg38.chr6_GL000254v2_alt  1885331 7 +   4827813 GCTCATT
s panTro5.chr6             30730993 7 + 175400573 GCTCATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31154650 7 + 173848474 GCTCATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     661623 7 +   2037526 GCTCATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75329310 7 + 122973662 GCTCATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31241421 7 + 172585720 GCTCATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30530415 7 - 170955103 GCTCATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     826746 7 +   1495729 GCTCATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      49849 7 -    811324 GCTCATT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30080407 7 -  71996105 GCTCATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      87192 7 +    779361 GCTCATT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     750599 7 -   1829203 GCTCATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30910023 7 + 171630274 GCTCATT
i calJac3.chr4             I 5 I 317
s saiBol1.JH378327            80711 7 -    750284 GCTCATT
i saiBol1.JH378327         I 5 I 824
s micMur3.chr6               645669 7 + 123392446 GCTCATT
i micMur3.chr6             C 0 I 3
s proCoq1.NW_012149775v1     677344 7 -   1411461 GCTCATT
i proCoq1.NW_012149775v1   C 0 I 3
s otoGar3.GL873550           693685 4 +  18854210 TCTC---
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              370003 7 +  72498081 TCCCATT
i canFam3.chr12            C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I
e aotNan1.NW_018511496v1      29148 317 -    566255 I
e cebCap1.NW_016107755v1    1329209 342 -   1771730 I

a score=2099171.000000
s hg38.chr6_GL000254v2_alt  1885338 151 +   4827813 ---AATATTTCTTCTTTGTTCTCCTGAGGAATCAAAAGATTCTCATTTATGATATGTC-AAAAGGCACATAAAGAAACATA--TCCAAACTTTGTTGTCTCTTCATTCAAGTTTGGCTTTAATATTTTATTAAAAATTTTTGTATTTGTAAATATTA
s panTro5.chr6             30731000 151 + 175400573 ---AATATTTCTTCTTTGTTCTCCTGAGGAATCAAAAGATTCTCATTTATGATATGTC-AAAAGGCACATAAAGAAACATA--TCCAAACTTTGTTGTCTCTTCATTCAAGTTTGGCTTTAATATTTTATTAAAAATTTTTGTATTTGTAAATATTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31154657 151 + 173848474 ---AATATTTCTTCTTTGTTCTCCTGAGGAATCAAAAGATTCTCATTTATGATATGTC-AAAAGGCACATAAAGAAACATA--TCCAAACTTTGTTGTCTCTTCATTCAAGTTTGGCTTTAATATTTTATTAAAAATTTTTGTATTTGTAAATATTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     661630 150 +   2037526 ---AATATTTCTTCTTTGTTCTCCTGAGGAATCAAAAGATTCTCATTTATGATATGTC-AAAAGGCACATAAAGAAACATA--TCCAAACTTTGTTGTCTCTTCATTCAAGTTTGGCTTTAATATTTTATT-AAAATTTTTGTATTTGTAAATATTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75329317 151 + 122973662 ---AATATTTATTCTTTGTTCTCCTGAGGAATCAAAAGATTCTCATTTATGATATGTC-AAAAGGCACATAAAGAAACATA--TCCAAACTTTGTTGTCTCTTCATTCAAGTTTGGCTTTAATATTTTATTAAAAATTTTTGTATTTGTAAATATTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31241428 151 + 172585720 ---AATATTTCTTCTTTGTTCTCCTGAGGAATCAAAAGATTCTCATTTATGATATTTC-AAAAGGCACATAAAGAAACATA--TCCAAACTTTGTTGTCTCTTCATTCAAGTTTGGCTTTAATATTTTATTAAAAATTTTTGTATTTGTAAATATTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30530422 151 - 170955103 ---AATATTTCTTCTTTGTTCTCCTGAGGAATCAAAAGATTCTCATTTATGATATTTC-AAAAGGCACATAAAGAAACATA--TCCAAACTTTGTTGTCTCTTCATTCAAGTTTGGCTTTAATATTTTATTAAAAATTTTTGTATTTGTAAATATTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     826753 151 +   1495729 ---AATATTTCTTCTTTGTTCTCCTGAGGAATCAAAAGATTCTCATTTATGATATTTC-AAAAGGCACATAAAGAAACATA--TCCAAACTTTGTTGTCTCTTCATTCAAGTTTGGCTTTAATATTTTATTAAAAATTTTTGTATTTGTAAATATTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      49856 151 -    811324 ---AATATTTCTTCTTTGTTCTCCTGAGGAATCAAAAAATTCTCATTTATGATATTTC-AAAAGGCACATAAAGAAACATA--TCCAAACTTTGTTGTCTCTTCATTCAAGTTTGGCTTTAATATTTTATTAAAAATTTTTGTATTTGTAAATATTA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30080414 151 -  71996105 ---AATATTTCTTCTTTGTTCTCCTGAGGAATCAAAAGATTCTCATTTATGATATTTC-AAAAGGCACATAAAGAAACATA--TCCAAACTTTGTTGTCTCTTCATTCAAGTTTGGTTTTAATATTTTATTAAAAATTTTTGTATTTGTAAATATTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      87199 151 +    779361 ---AATATTTCTTCTTTGTTCTCCTGAGGAATCAAAAGATTCTCATTTATGATATTTC-AAAAGGCACATAAAGAAACATA--TCCAAACTTTGTTGTCTCTTCATTCAAGTTTGGCTTTAATATTTTATTAAAAATTTTTGTATTTGTAAATATTA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     750606 151 -   1829203 ---AATATTTCTTCTTTGTTCTCCTGAGGAATCAAAAGATTCTCATTTATGATATTTC-AAAAGGCACATAAAGAAACATA--TCCAAATTTTGTTGTCTCTTCATTCAAGTTTGGCTTTAATATTTTATTAAAAATTTTTGTATTTGTAAATATTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30910347 140 + 171630274 ---AATAT---TTCTTTGTTCTCCTGAGGAATCGAAAGATTCTCATTTGTGGTATTTC--AAAGGCACGTAAAGAAACATA--TCCAAAC--TGTTGACTCTTCATTCAAGTTTGGCTTTAA-----TAGTAAAAATTATAGAATTTGTAAATATTA
i calJac3.chr4             I 317 C 0
s saiBol1.JH378327            81542 145 -    750284 ---AATATTTCTTCTTCGTTCTCCTGAGGAATCGAAAGATTCTCATTTGTGGTATTTC--AAAGGCACGTAAAGAAACGTAACTCCAAAC--TATTGACTCTTCATTCAAGTTTGGCtttaa-----tattaaaaattatagaatttgtaaatatta
i saiBol1.JH378327         I 824 C 0
s cebCap1.NW_016107755v1    1329551 143 -   1771730 ---AATATTTCTTCTTCGTTCTCCTGAGGAATGGAAAGATTCTCATTTGTGGTATTTC--AAAGGCACGTAAAGAAACATA--TCCAAAC--TGTTGACTCTTCATTCAAGTTTGGCTTTAA-----TATTAAAAATTATAGAATTTGTAAATATTA
i cebCap1.NW_016107755v1   I 342 C 0
s aotNan1.NW_018511496v1      29465 143 -    566255 ---AATATTTCTTCTTTGTTCTCCTGAGGAATCGAAAGATTCTCATTTGTGGTATTTC--AAAGGCACTTAAAGAAACATA--TCCAAAC--TGTTGACTCTTCATTCAAGTTTGGCTTTAA-----TATTAAAAATTATAGAATTTGTAAATATTA
i aotNan1.NW_018511496v1   I 317 C 0
s micMur3.chr6               645679 143 + 123392446 ---ATTATTTCTTGTTTGTTCTCCTGAGGAATCAAAAGATTCTCATTTATAATATTTC-AAAAGGCACAGTAAGAAACA----TCCAAACTTTGTGGTCTCTTCA------TTTGGCTTTAGTATTTTATTAAAAATTCTTGAATTTTTAAGTATCA
i micMur3.chr6             I 3 C 0
s proCoq1.NW_012149775v1     677354 141 -   1411461 ---ATTATTTCTTCTTTGTTCTCCTGAGGAATCCAAAGATTCTCATTTATAATATTTC-AAAAGGCACATCAAGAAACA----TCC--ACTTTGTTGTCTCTTCA------TTTGGCTTTAGTATTTTATTAAAAATTCTCAAATTTGTAAATATTA
i proCoq1.NW_012149775v1   I 3 C 0
s otoGar3.GL873550           693689 140 +  18854210 ---ATTATTTCTTCTTTGTTCTCCTGAGGAATCAAAAGATTCTTATTT---GTATTTC-AAAAGGCACATCAAAAAACA----TCCAAACTTTGTTGTCTCTTCA------TTTGGCTTTAGTATTTTATTAAAAATTCTTGAATCGGTAAATATTA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              370010 154 +  72498081 AATATTATCTTTTCTTTGTTCTCCTAAGCAATCAAGAGATTCTCACTT-TGATATTTCAAAAAGACACACTAACAAACATA--TCCAAACTTTGTTGTCTCTTTACCCAAGTATGGCtttaatattttattaaaaattcttgaatttataaatatta
i canFam3.chr12            C 0 C 0
e mm10.chr17               58956779 36400 -  94987271 I

a score=3696081.000000
s hg38.chr6_GL000254v2_alt  1885489 272 +   4827813 AAACACTGAAACTTGCTACTGACACAAGAACGACAATGCACTAACAATAAAATCAAAGTAGAAGCTAAACTATTCAGAAGCAGTAGCAACTCCATGATTCCAAGGTAATTT---------------------------------------AAACAGGCAAT---TTC--AGAG---------TGCTTCAAGATGAA----------------GGCGCAAAGCAGCC----------------------------------TCTCAGC-CTGCAGTGATGCTACGACACCGGCAGATGGCGCTGCAAAGCTTCTCAAATGCAGCGGGAAGTCCATTTACCAACGGCTGTTGCGATCTCTTAATTAGCTTGAACTGAG---
s panTro5.chr6             30731151 272 + 175400573 AAACACTGAAACTTGCTACTGACACAAGAACGACAATGCACTAACAATAAAATCAAAGTAGAAGCTAAACTATTCAGAAGCAGTAGCAACTCCATGATTCCAAGTTAATTT---------------------------------------AAACAAGCAAT---TTC--AGAG---------TGCTTCAAGACGAA----------------GGCGCAAAGCAGCC----------------------------------TCTCAGC-CTGCAGTGATGCTACGACACCGGCAGATGGCGCTGCAAAGCTTCTCAAATGCAGCGGGAAGTCCATTTACCAACGGCTGTTGCGATCTCTTAATTAGCTTGAACTGAG---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31154808 272 + 173848474 AAACACTGAAACTTGCTACTGACACAAGAACGACAATGCACTAACAATAAAATCAAAGTAGAAGCTAAACTATTCAGAAGCAGTAGCAACTCCATGATTCCAAGGTAATTT---------------------------------------AAACAAGCAAT---TTC--AGAG---------TGCTTCAAGACGAA----------------GGCGCAAAGCAGCC----------------------------------TCTCAGC-CTGCAGTGATGCTACGACACCGGCAGATGGCGCTGCAAAGCTTCTCAAATGCAGCGGGAAGTCCATTTACCAACGGCTGTTGCGATCTCTTAATTAGCTTGAACTGAG---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     661780 272 +   2037526 AAACACTGAAACTTGCTACTGACACAAGAACGACAATGCACTAACAATAAAATCAAAGTAGAAGCTAAACTATTCAGAAGCAGTAGCAACTCCATGATTCCAAGGTAATTT---------------------------------------AAACAGGCAAT---TTC--AGAG---------TGCTTCAAGATGAA----------------GGCGCAAAGCAGCC----------------------------------TCTCAGC-CTGCAGTGATGCTACGACACCGGCAGATGGCGCTGCAAAGCTTCTCAAATGCAGCGGGAAGTCCATTTACCAACGGCTGTTGCGATCTCTTAATTAGCTTGAACTGAG---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75329468 247 + 122973662 AAACACTGAAACTTGCTACTGACACAAGAACGACAATGCACTAACAATAAAATCAAAGTAGAAGCTAAACTATTCAGAAGCAGTAGCAACTCCATGATTCCAAGGTAATTT---------------------------------------AAACAGGCAAT---TTC----------------------AGATGAA----------------GGCGCAAAGCAGCC----------------------------------TCTCAGC-CTGCAGTGATGCTACGACACCGGCAGATGGCGCTGCAAAGCTTCTCAAATGCAGCGTGAGG----------AGAGGCTGTTGCGATCTC----TTAGTTTGAACTGAG---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31241579 259 + 172585720 AAACACTGAAACTTGCTACTGACACAAGAATGACAATGCACTAACAATAAAATC------------AAACTATTCAGAAGCAGTAGCAACTCCATGATTCCAAGGTAATTT---------------------------------------AAACAGGCAAC---CTC--AGAG---------TGCTTCAAGATGAA----------------GGCGCAAAGCAGCC----------------------------------TCTCAGC-CTGCAGTTATGC-ACGACACCGGCAGATAGCGCTGCAAAGCTTCACAAATGCAGCGGGAAGTCCATTTACCAATGGTTGTGGCGATCTCCTAATTAGCTTGAACTGAG---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30530573 259 - 170955103 AAACACTGAAACTTGCTACTGACACAAGAATGACAATGCACTAACAATAAAATC------------AAACTATTCAGAAGCAGTAGCAACTCCATGATTCCAAGGTAATTT---------------------------------------AAACAGGCAAC---CTC--AGAG---------TGCTTCAAGATGAA----------------GGCGCAAAGCAGCC----------------------------------TCTCAGC-CTGCAGTTATGC-ACGACACCGGCAGATAGCGCTGCAAAGCTTCACAAATGCAGCGGGAAGTCCATTTACCAATGGTTGTGGCGATCTCCTAATTAGCTTGAACTGAG---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     826904 259 +   1495729 AAACACTGAAACTTGCTACTGACACAAGAATGACAATGCACTAACAATAAAATC------------AAACTATTCAGAAGCAGTAGCAACTCCATGATTCCAAGGTAATTT---------------------------------------AAACAGGCAAC---CTC--AGAG---------TGCTTCAAGATGAA----------------GGCGCAAAGCAGCC----------------------------------TCTCAGC-CTGCAGTTATGC-ACGACACCGGCAGATAGCGCTGCAAAGCTTCACAAATGCAGCGGGAAGTCCATTTACCAATGGTTGTGGCGATCTCCTAATTAGCTTGAACTGAG---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      50007 259 -    811324 AAACACTGAAACTTGCTACTGACACAAGAACGACAATGCACTAACAATAAAATC------------AAACTATTCAGAAGCAGTAGCAACTCCATGATTCCAAGGTAATTT---------------------------------------AAACAGGCAAT---TTC--AGAG---------TGCTTCAAGATGAA----------------GGCGCAAAGCAGCC----------------------------------TCTCAGC-CTGCAGTTATGC-ACGACACCGGCAGATAGCGCTGCAAAGCTTCACAAATGCAGCGGGAAGTCCATTTACCAATGGTTGTGGCGATCTCCTAATTAGCTTGAACTGAG---
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30080565 259 -  71996105 AAACACTGAAACTTGCTACTGACACAAGAACGACAATGCACTAACAATAAAATC------------AAACTATTCAGAAGCAGTAGCAACTCCACGATTCCAAGGTAATTT---------------------------------------AAACAGGCAAT---TTC--AGAG---------TGCTTCAAGATGAA----------------GGCGCAAAGCAGCC----------------------------------TCTCAGC-CTGCAGTTATGC-ACGACACCGGCAGATAGCGCTGCAAAGCTTCACAAATGCAGCGGGAAGTCCATTTACCAATGGTTGTGGCGATCTCCTAATTTGCTTGAACTGAG---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      87350 259 +    779361 AAACACTGAAACTTGCTACTGACACAAGAACGACAATGCACTAACAATAAAATC------------AAACTATTCAGAAGCAGTAGCAACTCCATGATTCCAAGGTAATTT---------------------------------------AAACAGGCAAT---TTC--AGAG---------TGCTTCAAGATGAA----------------GGCGCAAAGCAGCC----------------------------------TCTCAGC-CTGCAGTTATGC-ACGACACCGGCAGATAGCGCTGCAAAGCTTCACAAATGCAGCGGGAAGTCCATTTACCAATGGTTGTGGCGATCTCCTAATTAGCTTGAACTGAG---
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     750757 259 -   1829203 AAACACTGAAATTTGCTATTGACACAAGAACGACAATGCACTAACAATAAAATC------------AAACTATTCAGAAGCAGTAGCAACTCCACGATTCCAAGGTAATTT---------------------------------------AAACAGGCAAT---TTC--AGAG---------TGCTTCAAGATGAA----------------GGCGCAAAGCAGCC----------------------------------TCTCAGC-CTGCAGTTATGC-ACGACACCGGCAGATAGCGCTGCAAAGCTTCACAAATGCAGCGGGAAGTCCATTTACCAATGGTTGTGGCGATCTCCTAATTAGCTTGAACTGAG---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30910487 268 + 171630274 AAACACTGAAACTTGCT------ACAAGAACGACAGTGCACTAACAATAAAATCAAAGTAGAAGCTAAACTATTCAGAAGCAGTAGCAACTCCATGATTCCAAGGTAATTT---------------------------------------AAACAGGCAAT---TTCAAAGAA---------TGCTTCATGATGAA----------------GGCGCAAAGCAGCC----------------------------------TCTCGGC-CTGCAGTGATACGACGACACCGGCAGATGGCGTTGCAAAGCTTCTCAAATGCGGCGAGAAGTCCATTTACCAATGGCTGTTGCGATCTCTTAATTCGCTTGAACTGAG---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            81687 265 -    750284 aaaCATTGAAACTTGCT------ACAAGAACGACAATGCACTAACAATGAAATCAAAGTAGAAGCTAAACTATTTAAAAGCAGTAGCAACTCCATGATTCCAAGGGAATTT---------------------------------------AAACAGACAAT---TTC--AGAG---------TGCTTCATGATGAA----------------GGGGCAAAGCAGCC----------------------------------TCTCAGC-CTGCAGTGATGAGGCGACACCGGCAGATGGCGCTGCAAAGTTTC-CAAATGCCGCGAGAAGTCCATTTACCAATGGCTGTTGCCATCTCTTAATTAGCTTGAACTGAG---
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1329694 268 -   1771730 AAACACTGAAACTTGCT------ACAAGAACGACAATGCACTAACAATAAAATCAAAGTAGAAGCTAAACTATTCAGAAGCAGTAGCAACTCCATGATTCCAAGGTAATTT---------------------------------------AAACAGGCAAT---TTCAAAGAG---------TGCTTCATGATGAA----------------GGTGCAAAGCAGCC----------------------------------TCTCAGC-CTGCAGTGATGCGACGGCACCGGCAGATGGCGTTGCAAAGTTTCTCAAATGCCGCGAGAAGTCCATTTACCAATGGCTGTTGCGATCTCTTAATTAGCTTGAACTGAG---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      29608 266 -    566255 AAACACTGAAACTTGCT------ACAAGAACGACAATGCACTAACAATAAAATCAAAGTAGAAGCTAAACTATTCAGAAGCAGTAGCAACTCCATGATTCCAAGGTAATTT---------------------------------------AAACAGGCAAT---TTC--AGAG---------TGCTTCATGATGAA----------------GGCGCAAAGCAGCC----------------------------------TCTCAGC-CTGCAGTGATGCGACGACACCGGCAGATGGCGCTGCAAAGTTTCTCAAATGCGGCGAGAAGTCCATTTACCAATGGCTGTTGCGATCTCTTAATTAGCTTGAACTGAG---
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               645822 264 + 123392446 AAACACTGAAACTTGCTAATGACACAAGAATGACAATGCAGTAACAATAAAATCAAAGTAGAAGCTAATCTATTTAG-------TACAACTCCATAACTGGAAGATAATTT---------------------------------------AAACAGGCAA----TTT--TAAG---------TGTTTCAAAGTGAA----------------GTTGCAAAGCAGCC----------------------------------TCCCAGC-CTGCAGAGATGCTGCCGCACCGGCAGGCGGCGCTGCAAAGCTTCCCAGGTGCAGCGGGAAGCCCATTTACCAATGGCTGTTGCGATGTCTTAATTAGCTTTAACTGAG---
i micMur3.chr6             C 0 I 1791
s proCoq1.NW_012149775v1     677495 271 -   1411461 AAACACTGAAACTTGCTATTGACACAAGAATGACAATGCGCTAACAATAAAATCAAAGTAGAAGCTAATCTATTTAGAAGCAGTAACAACTCCATAACTCGAAGATAATGT---------------------------------------AAACAGGCAA----TTT--TAAG---------TGTTTCAAAACGAA----------------GTTGCAAAGCAGCC----------------------------------TCCCAGC-CTGCAGAGATGCTGCCACACCGGCAGGTGGCGCTGCGAGGCTTCCCAGGGGCAGCGGGAAGCCCATTTACCAATGGCTGTTGCGATGCCTTAATTAGCTTTAACTGAG---
i proCoq1.NW_012149775v1   C 0 I 3
s otoGar3.GL873550           693829 262 +  18854210 AAACACTGAAACTTGCTACGGACACAAGAATGACAATGCACTAACAATAAAATCAAAGTAGAAGCTAAAC----TAGAACAGTTAACAACTCCATAACTGGAAGGTAATTT---------------------------------------AAACAGGCAAT---TTT--TAAA---------GTTTTCATAATGAA----------------GACGCAAAGCAGCC----------------------------------TCCCA-C-CGGCAGTGGTGCTGTCATACCGGCAGATGGCGCTGCAAAGCTTCTCAGATGCAGCGGGAAGCTCATTTACCAAAGGCTGTTGCGATCTCTGAATTAGCTTGAG--------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58993179 327 -  94987271 AACCATTGAAATCTGCTACGAGTAGAAGAACGA-----------------------------AGCTAAACGGTTTCAAAACAGCAGCAACGCAATAGCTCTAAGATAATTTTTATTTGTGGTAtgagataaggtcttgttatttagcccaggatagcctatctgttc--acagcaatcctcttgtctcagcctgaaaagctggggttaaaggggtgcaccacagcccagctCCATCGAACGTCGCGCGACGTCAGGGTTTCCTCTGCGCAGCCATGACGCATCTTGACCAGCAGGTGGCACTGCGGAG--TCGCAGGTGCGGTGGACCGACCCTTTACCCAAGGCTGTGGGGATCT----------------TGAG---
i mm10.chr17               I 36400 C 0
s canFam3.chr12              370164 265 +  72498081 aaaCACTGCAATTTATT---GGCACAAGAATGACAATGCACTAGCAATAAAATCAAAATAGAAACTAAACTATTTAGAAGCAGTAGCAACTCCATACTTCAAAGATAATTT---------------------------------------AAACAGGCAAT---TTT--AGAG---------TGCTTCA---TATA----------------TATAAAAAGCAGT-----------------------------------TCTCAGC-CTGCAGTGATGCTGCCACATGGGCAGATGATGCT---AAGCATCTCAGGTGCAGCAGGAAACCCTTTAACCAATGGCTGCTGCAATTTCTTAATTAGCTTGAATTAATGAG
i canFam3.chr12            C 0 C 0

a score=194005.000000
s hg38.chr6_GL000254v2_alt  1885761 16 +   4827813 TTTGTATTAGAATTTA
s panTro5.chr6             30731423 16 + 175400573 TTTGTATTAGAATTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31155080 16 + 173848474 TTTGTATTAGAATTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     662052 16 +   2037526 TTTGTATTAGAATTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75329715 12 + 122973662 TTTGTATTAGAA----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31241838 16 + 172585720 TTTGTATTAGAATTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30530832 16 - 170955103 TTTGTATTAGAATTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     827163 16 +   1495729 TTTGTATTAGAATTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      50266 16 -    811324 TTTGTATTAGAATTTA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30080824 16 -  71996105 TTTGTATTAGAATTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      87609 16 +    779361 TTTGTATTAGAATTTA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     751016 16 -   1829203 TTTGTATTAGAATTTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30910755 16 + 171630274 TTTGTATTAAAATTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            81952 16 -    750284 TTTGTATTAGAATTCA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1329962 16 -   1771730 TTTGTATTAGAATTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      29874 16 -    566255 TTTGTATTAGAATTCA
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     677769 16 -   1411461 TTCGTATTAGAATTTA
i proCoq1.NW_012149775v1   I 3 I 833
s otoGar3.GL873550           694091 16 +  18854210 TTCATATTAGAATTTA
i otoGar3.GL873550         C 0 I 5
s mm10.chr17               58993506  8 -  94987271 ------TTCCAAGT--
i mm10.chr17               C 0 C 0
s canFam3.chr12              370429 15 +  72498081 -TTCACTCAGAATTTA
i canFam3.chr12            C 0 C 0
e micMur3.chr6               646086 1791 + 123392446 I

a score=1255489.000000
s hg38.chr6_GL000254v2_alt  1885777 104 +   4827813 TAATTTTTACTGCATATTGCAGTTACTCGTATATTACTGAC--ACTGgaaca---gacatgttttaacaaactggttga-gccgtatcagtgcgaaccagctgaatgtca
s panTro5.chr6             30731439 104 + 175400573 TAATTTTTACTGCATATTGCAGTTACTCGTATATTACTGAC--ACTGGAACA---GACatgttttaacaaactggttga-gccgtatcagtgcgaaccagctgaatgtca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31155096 104 + 173848474 TAATTTTTACTGCATATTGCAGTTACTAGTATATTACTGAC--ACTGGAACA---GACatgttttaacaaactggttga-gccgtatcagtgcgaaccagctgaatgtca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     662068 104 +   2037526 TAATTTTTACTGCATATTGCAGTTACTCGTATATTACTGAC--ACTGGAACA---GACatgttttaacaaactggttga-gccgtatcagtgcgaaccagctgaatgtca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75329727 101 + 122973662 -----TTTACTGCTTATTGCAGTTACTCGTATATTACTGAC--ACTGGAACGTCTGACatgttttaac-aactggttga-gccataccagtgcgaaccagctgaatttcg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31241854 103 + 172585720 TAATTTTTACTGCTTATTGCAGTTACTCATATATTACTGAC--ACTGGAACA---GATatgttttaac-aactggttga-gccgtaccagtgcgaaccagctgaatgtca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30530848 103 - 170955103 TAATTTTTACTGCTTATTGCAGTTACTCTTATATTACTGAC--ACTGGAACA---GATatgttttaac-aactggttga-gccgtaccagtgcgaaccagctgaatgtca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     827179 103 +   1495729 TAATTTTTACTGCTTATTGCAGCTACTCATATATTACTGAC--ACTGGAACA---GATatgttttaac-aactggttga-gccgtaccagtgcgaaccagctgaatgtca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      50282 103 -    811324 TAATTTTTACTGCTTATTGCAGTTACTCGTATATTACTGAC--ACTGGAACA---GATatgttttaac-aactggttga-gccgtaccagtgcgaaccagctgaatgtca
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30080840 103 -  71996105 TAATTTTTACTGCTTATTGCAGTTACTCGTATATTACTGAC--ACTGGAACA---GACatgttttaac-aactggttga-gccgtaccagtgcgaaccagctgaatgtca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      87625 103 +    779361 TAATTTTTACTGCTTATTGCAGTTACTCGTATATTACTGAC--ACTGGAACA---GATatgttttaac-aactggttga-gccgtaccagtgcgaaccagctgaatgtca
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     751032 103 -   1829203 TAATTTTTACTGCTTATTGCAGTTACTCGTATATTACTGAC--ACTGGAACA---GACatgttttaac-aactggttga-gccgtaccagtgcgaaccagctgaatgtca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30910771 102 + 171630274 TAATTTTTACTGCTTATTGCAGTTACTCGTATACTACTGAC--ACTGGAACA---GACGtgttttaac-aact-gttga-gccgtaccagtgcgagccagctgaatgtca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            81968 103 -    750284 TAATTTTTACTGCTTTTTGCAGTTACTCGTATACTACGGAC--ACTGGAACA---GATGtgttttaac-aactggttga-gccgtaccagtgcgagccagctgaatgtca
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1329978 103 -   1771730 TAATTTTTACTGCTTTTTGCAGTTACTCGTATACTACTGAC--ACTGGAACA---GACGtgttttaac-aactggttga-gccgtaccagtgcgagccagctgaatgtca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      29890 103 -    566255 TAATTTTTACTGCTTTTTGCAGTTACTCGTATACTACTGAC--ACTGGAACA---GACGtgttttaac-aactggttga-gccgtaccagtgcgagccagctgaatgtca
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           694112 105 +  18854210 TTATTTTTACTGCTAATTGCAGTTACTCTCATActacttactgactggtaca---gaagtgttttaac-aactggttga-gccgtaccagtacaagccagctgaatgtca
i otoGar3.GL873550         I 5 C 0
s mm10.chr17               58993514  99 -  94987271 --GTTTTTCCTGC-TGTTGCAGCTACTCATTACTTACTACCT-ACTGATACA---TA-ATATTTCAAC-ATAAAGATGA-GCTGTAGCCGCAC-AGCTATCTGAACGTCA
i mm10.chr17               C 0 I 62
s canFam3.chr12              370444  85 +  72498081 TTTTGTTTACTGCTTACTGTAGTTACTCTTACActacttactaactggtaca---gaagtgttttaac-aactggttgaggcagtaccg---------------------
i canFam3.chr12            C 0 C 0
e micMur3.chr6               646086 1791 + 123392446 I
e proCoq1.NW_012149775v1     677785 833 -   1411461 I

a score=2115692.000000
s hg38.chr6_GL000254v2_alt  1885881 189 +   4827813 gcgctgttccctcct---gtgacagaagccac-cgg-cgcctgcctgagggcactcccctcactgggactctcagtaccacgcccacctgtccccaaggtttgtttcatcactaagccccaccttccagcattttc--acctttctccttcacttgatccttcttcctaacatcgtgtta---------acacactccaaactaa----------------
s panTro5.chr6             30731543 189 + 175400573 gcgctgttccctcct---gtgacagaagccac-cgg-cgcctgcctgagggcactcccctcactgggactctcagtaccacgcccacctgtccccaaggtttgtttcatcactaagccccaccttccagcattttc--acctttctccttcacttgatccttcttcctaacatcgtgtta---------acacactccaaactaa----------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31155200 189 + 173848474 gcgctgttccctcct---gtgacagaagccac-cgg-cgcctgcctgagggcacttccctcactgggactctcagtaccacgcccacctgtccccaaggtttgtttcatcactaagccccaccttccagcattttc--acctttctccttcacttgatccttcttcctaacatcgtgtta---------acacactccaaactaa----------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     662172 189 +   2037526 gcgctgttccctcct---gtgacagaagccac-cgg-cgcctgcctgagggcactcccctcactgggactctcagtaccacgcccacctgtccccaaggtttgtttcatcactaagccccaccttccagcattttc--acctttctccttcacttgatccttcttcctaacatcgtgtta---------acacactccaaactaa----------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75329828 189 + 122973662 gcgctgttccctcct---gtgacagaagccac-cgg-cgcctgcctgagggcactcccctcactgaaactctcagtaccacgcccacctgtccccaaggtttgttccatcactaagccccaccttccagcattttc--acctttctccttcacttgatccttcttcctaacatcgtgtta---------acacactccaaactaa----------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31241957 189 + 172585720 gcgctgTTCCCTCCT---GTGACAGAAGCCAT-GGG-CGCCTGCCTGAGGGCACTCCCCTCACTGGGACTCTCAGTACCACGCCCACCTGTCCCCAAGGCTTGTTCCATCACTAAGCCCCACCTTCCCGCATTTTC--ACCTTTCTCCTCCACTTGATCCTTCTTCCTAACATCATGTTA---------ACACACTCCAAACTAA----------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30530951 189 - 170955103 gcgctgTTCCCTCCT---GTGACAGAAGCCAT-GGG-CGCCTGCCTGAGGGCACTCCCCTCACTGGGACTCTCAGTACCACGCCCACCTGTCCCCAAGGCTTGTTCCATCACTAAGCCCCACCTTCCCGCATTTTC--ACCTTTCTCCTCCACTTGATCCTTCTTCCTAACATCATGTTA---------ACACACTCCAAACTAA----------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     827282 189 +   1495729 gcgctgTTCCCTCCT---GTGACAGAAGCCAT-GGG-CGCCTGTCTGAGGGCACTCCCCTCACTGGGACTCTCAGTACCACGCCCACCTGTCCCCAAGGCTTGTTCCATCACTAAGCCCCACCTTCCCGCATTTTC--ACCTTTCTCCTCCACTTGATCCTTCTTCCTAACATCATGTTA---------ACACACTCCAAACTAA----------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      50385 189 -    811324 gcgctgTTCCCTCCT---GTGACAGAAGCCAT-GGG-CGCCTGCCTGAGGGCACTCCCCTCACTGGGACTCTCCGTACCACGCCCACCTGTCCCCAAGGCTTGTTCCATCACTAAGCCCCACCTTTCCGCATTTTC--ACCTTTCTCCTCCACTTGATCCTTCTTCCTAACATCATGTTA---------ACACACTCCAAACTAA----------------
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30080943 189 -  71996105 gcgctgTTCCCTCCT---GTGACAGAAGCCAC-GGG-CGCCTGCCTGAGGGCACTCCCCTCACTGGGACTCTCAGTACCACGCCCACCTGTCCCCAAGGCTTGTTCCATCACTAAGCCCCACCTTCCCGCATTTTC--ACCTTTCTCCTCCACTTGATCCTTCTTCCTAACATCACGTTA---------ACACACTCCAAACCAA----------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      87728 189 +    779361 gcgctgTTCCCTCCT---GTGACAGAAGCCAT-GGG-CGCCTGCCTGAGGGCACTCCCCTCACTGGGACTCTCAGTACCACGCCCACCTGTCCCCAAGGCTTGTTCCATCACTAAGCCCCACCTTTCCGCATTTTC--ACCTTTCTCCTCCACTTGATCCTTCTTCCTAACATCATGTTA---------ACACACTCCAAACTAA----------------
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     751135 189 -   1829203 gcgctgTTCCCTCCT---GTGACAGAAGCCAC-GGG-CGCCTGCCTGAGGGCACTCCCCTCACTGGGACTCTCAGTACCACGCTCACCTGTCCCCAAGGCTTGTTCCATCACTAAGCCCCACCTTCCCGCATTTTC--ACCTTTCTCCTCCACTTGATCCTTCTTCCTAACATCATGTTA---------ACACACTCCAAACTAA----------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30910873 189 + 171630274 gcgctgTTCCCTCCT---ATGACAGACGCCAC-CGG-CGCCTGCCTGAGGGCACTCCCCTCACCGGGATTCTCAGTACCACGCCCACAGATCCCCAAGGCTTGTTCCGTCCCTAAGCCCCATCTTCCTGCATTCTC--ACCCTTCTCCTCCACTTAATCTTTCTTCCTAGCATCATGTTA---------ACCGGCTCCAAACTAA----------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            82071 192 -    750284 gcgctgttccctcctataatgacagacgccac-cgg-cgcccgcctgagggcactcccctcaccgggattctcagtactgcgcccacaggtccccaaggcttgttccggcactaagccccaccttcctgcattctc--acccttcccctccacttgctctttcttcttgacatcatgtta---------acaggctccaaactca----------------
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1330081 191 -   1771730 gcgctgttccctcctataatgacagacgccac-tgg-cgcctgcctgagggcactcccctcaccgggattctcagtactaca-ttacatgtccccaaggcttgttccgtcgctaagccccaccttcctgcattctc--acccttcccctccacttgatctttcttcctaacatcatgtta---------acaggctccaaactca----------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      29993 191 -    566255 gcgctgTTCCCTCCTATAATGACAGACGCCAC-CGG-CGCCTGCCTGAGGGCACTCCCCTCCCCGGGATTCTCAGTACCACGCCCAGAGGTCCCCAAGGCTTGTTCCGTCACTAAGCCCCACGTTCCTGCATTCTC--ACCCTTCTCCTCCA-TTGATCTTTCTTCCTAATATCATGTTA---------ACAGGCTCCAAACTCA----------------
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           694217 203 +  18854210 gcgctgTTCCCTCCCGTTATGGCAGAAGCCAC-CGGACGCCTGCCTGAGGGTACTCCCGGCTCCAGGACTCTCAGTACTAAGCCCGCCTCTCTCCAAGGC-AGTTACAACACTAACTCCCACCTTCCTGCATTTTCAAACTCTCCTCCCCGACTTGCTCCTTCTTCCTAATAGCATGTTGAAACTCAACAAACTCTCCACACTTA----------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              370529 179 +  72498081 gtacCGTTTCCTTCTATTAACACAGAAGCCACTTGG-CTCCTGT----GGGCA--------------------GGGACCACATCATCTGCTTTCCAGGGTTTGTTCCATT-CTAATTCCCACTTTCCTGCATTTCC-AACTTTTCGTCCTCACTTGA------TTCTTAACAGCATGTTA---------TAACACTCAAAACTTaaaaaaaaaaaaaaaaa
i canFam3.chr12            C 0 C 0
e micMur3.chr6               646086 1791 + 123392446 I
e mm10.chr17               58993613  62 -  94987271 I
e proCoq1.NW_012149775v1     677785 833 -   1411461 I

a score=724367.000000
s hg38.chr6_GL000254v2_alt  1886070 78 +   4827813 aaaagttcctcaactgcatatactctgctccctccatttttttctttcattgcaatcactgc---caaacattttgaaaat
s panTro5.chr6             30731732 78 + 175400573 aaaagttcctcaactgcatatactctgctccctccatttttttctttcattgcaatcactgc---caaacattttgaaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31155389 78 + 173848474 aaaagttcctcaactgcatatactctgctccctccatttttttctttcattgcaatcactgc---caaacattttgaaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     662361 77 +   2037526 aaaagttcctcaactgcatatactctgctccctcca-ttttttctttcattgcaatcactgc---caaacattttgaaaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75330017 78 + 122973662 aaaagttcctcaactgcatatactctgcttcctccatttttttctttcattgcaatcactgc---caaacattttgaaaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31242146 71 + 172585720 AACA---CTTCAACTGCATATACTCTACTCCCTCCATTTTTTTCTTTCATTGCAATCACTGC-------CATTTTGAAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30531140 71 - 170955103 AACA---CTTCAACTGCATATACTCTACTCCCTCCATTTTTTTCTTTCATTGCAATCACTGC-------CATTTTGAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     827471 71 +   1495729 AACA---CTTCAACTGCATATACTCTACTCCCTCCATTTTTTTCTTTCATTGCAATCACTGC-------CATTTTGAAAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      50574 71 -    811324 AACA---CTTCAACTGCATATACTCTACTCCCTCCATTTTTTTCTTTCATTGCAATCACTGC-------CATTTTGAAAAT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30081132 71 -  71996105 AAAA---CTTCAACTGCATATACTCTACTCCTTTCATTTTTTTCTTCCATTGCAATCACTGC-------CATTTTGAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      87917 71 +    779361 AACA---CTTCAACTGCATATACTCTACTCCCTCCATTTTTTTCTTTCATTGCAATCACTGC-------CATTTTGAAAAT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     751324 71 -   1829203 AAAA---CTTCAACTGCATATACTCTACTCCCTGCATTTTTTTCTTTCATTGCAATCACTGC-------CATTTTGAAAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30911062 77 + 171630274 AAAAATTCCTCAATTGCCTATACTCTGCTCCTTCCA-TTTTTTATTTCATTACAATCACTGC---CAAACAACTTGAAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            82263 78 -    750284 aaaagttcctcaattgcctatactctgctccttccacttttttctttgattgcaatcacggc---caaacaacttgaaaat
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1330272 77 -   1771730 aaaagtttctcaattgcctacagtctactccttcca-ttttttctttcattgcagtcactgc---caaacaacttgaaaat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      30184 74 -    566255 AAAAGT---TCAATTGCCTATACTCTGCTCCTTCCG-TTTTTTCTTTCATTGCAATCACTGC---CAAACAACTTGAAAAT
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           694420 79 +  18854210 AAAAGCTCCTCAATTCCGTTTACTCTGCTCCCCTCA--TTTTTCTTCCATTGCAGTCATTGATAACAAACATCTTGAAAAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58993675 57 -  94987271 aagtgctcctaaattgctgagccttctctccaccc---------------------cATAGC---CAAATTACTTGACAAT
i mm10.chr17               I 62 C 0
s canFam3.chr12              370708 74 +  72498081 aaaaaGTCCTCAATTCTATATA-TCTGCTCTCTCCA---CTGTCTTTCATTGCAAATACAGC---CAAATTTATTGAAAAT
i canFam3.chr12            C 0 I 116
e micMur3.chr6               646086 1791 + 123392446 I
e proCoq1.NW_012149775v1     677785 833 -   1411461 I

a score=1016999.000000
s hg38.chr6_GL000254v2_alt  1886148  87 +   4827813 ----------------tctc--------------------------------------------------------------tcctcacctccactgcctttacgcttttcctccaaattattc----cttaaccctctgacatctggggcttctgattccacctctcc
s panTro5.chr6             30731810  87 + 175400573 ----------------tctc--------------------------------------------------------------tcctcacctccactgcctttacgcttttcctccaaattattc----cttaaccctctgacatctggggcttctgattccacctctcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31155467  87 + 173848474 ----------------tctc--------------------------------------------------------------tcctcacctccactgcctttacgcttttcctccaaattattc----cttaaccctctgacatctggggcttctgattccacctctcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     662438  87 +   2037526 ----------------tctc--------------------------------------------------------------tcctcacctccaccgcctttacgcttttcctccaaattattc----cttaaccctctgacatctggggcttctgattccacctctcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75330095  87 + 122973662 ----------------tctc--------------------------------------------------------------tcctcacctccactgcctttactcttttcctccaaattattc----cttaaccctctgacatctggggcctctgattccacctctcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31242217  87 + 172585720 ----------------TCTC--------------------------------------------------------------TCCTCACCTCCACTGCCTCTACTCTTTTCCTCCAAATTATTC----CTTAACCCTCTGACATCTGGGGCCTCTGATTCCACCTCTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30531211  87 - 170955103 ----------------TCTC--------------------------------------------------------------TCCTCACCTCCACTGCCTCTACTCTTTTCCTCCAAATTATTC----CTTAACCCTCTGACATCTGGGGCCTCTGATTCCACCTCTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     827542  87 +   1495729 ----------------TCTC--------------------------------------------------------------TCCTCACCTCCACTGCCTCTACTCTTTTCCTCCAAATTATTC----CTTAACCCTCTGACATCTGGGGCCTCTGATTCCACCTCTCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      50645  87 -    811324 ----------------TCTC--------------------------------------------------------------TCCTCATCTCCACTGCCTCTACTCTTTTCCTCCAAATTATTC----CTTAACCCTCTGACATCTGGGGCCTCTGATTCCACCTCTCC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30081203  87 -  71996105 ----------------TCTC--------------------------------------------------------------TCCTCACCTCCACTGCCTTTACTCTTTTCCTCCAAATTATTC----CTTAACCCTCTGCCATCTGGGGCCTCTGATTCCACCCCTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      87988  87 +    779361 ----------------TCTC--------------------------------------------------------------TCCTCATCTCCACTGCCTCTACTCTTTTCCTCCAAATTATTC----CTTAACCCTCTGACATCTGGGGCCTCTGATTCCACCTCTCC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     751395  87 -   1829203 ----------------TCTC--------------------------------------------------------------TCCTCACCTCCACTGCCTTTACTCTTTTCCTCCAAATTATTC----CTTAACCCCCTGACATCTGGGGCCTCTGATTCCACCTCTCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30911139  87 + 171630274 ----------------TCTC--------------------------------------------------------------TCCTCTACTCCACTGCCTTTACTCTTTTCCTCCAAATTATTC----CTTAACCCTCTGACATCTGGGGCCTCTGATTCCACCTCTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            82341  87 -    750284 ----------------tctc--------------------------------------------------------------tcctcgactccactggctttacccttttcctccaaattattc----cttagccctctgacatctggggcctctgattctacctctcc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1330349  87 -   1771730 ----------------tccc--------------------------------------------------------------tcctcgactccactgcctttactcttttcctccaaattatgc----cttagccctctgacagctggggcctctgattctacctctcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      30258  87 -    566255 ----------------TCTC--------------------------------------------------------------TCCTCGACTCCACTGCCTTTACTCTTTTCCTCCAAATTATTC----CTTAGCCCTCTGGCATCTGGGGCCTCTGATTCCACCTCTCC
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           694499  91 +  18854210 ----------------TATA--------------------------------------------------------------TCCTCACCTCAGCTGCCTCCACTGTCTTCTTTCAAGTTAGTCAGTTCTTAATCCTCTGACACCTGGGGCCTCCGATTTCACCTCTTC
i otoGar3.GL873550         C 0 I 269
s mm10.chr17               58993732  63 -  94987271 ----------------TACA--------------------------------------------------------------TCCTTA-TTCCAATGCCTGCAC------------------------CTCTATCCGCT---ATATGGGGCCTTCAAGCTCATCTCTTC
i mm10.chr17               C 0 C 0
s canFam3.chr12              370898 147 +  72498081 tctccctctgactaggtctctgcttctgtgtgtctttcatgaataaataaaatcttTTTTTTTTTTTTTTAAGAAAATCATATCCTTTCCCCCACTGCCTCCACTTCCTTCCTCCAAGTCATTC----CTTCA------------------TTCTGATCTCACCTGTCC
i canFam3.chr12            I 116 C 0
e micMur3.chr6               646086 1791 + 123392446 I
e proCoq1.NW_012149775v1     677785 833 -   1411461 I

a score=2030437.000000
s hg38.chr6_GL000254v2_alt  1886235 222 +   4827813 -aaagaaa--tgctcccac--caagaccatg---gaggcccctctcgtt----gctggtg-------------------gatactcgttcattttccccgccaccac---------c---catcagcagcgttccacgcc--gc----ccttccttccttccttcctcccctagc-ttcatcacac--cacgtta----ctagg-tttttcctgtctcactggctc--ctttccct------------------------gctctcctttt---t------atatgtttcctgctttc------ttcctcag----ccttctct
s panTro5.chr6             30731897 222 + 175400573 -aaagaaa--tgctcccac--caagaccatg---gaggcccctctcgtt----gctggtg-------------------gatactcgttcattttccccgccaccac---------c---catcagcagcgttccacgcc--gc----ccttccttccttccttcctcccctagc-ttcatcacac--cacgtta----ctagg-tttttcctgtctcactggttc--cttcccct------------------------gctctcctttt---t------atatgtttcctgctttc------ttcctcag----ccttctct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31155554 220 + 173848474 -aaagaaa--tgctcccac--caagaccatg---gaggcccctctcgtt----gctggtg-------------------gatactcgttcattttccccaccaccac---------c---catcagcagcgttccacgcc--gc----ccttccttccttccttcctcccctagc-ttcatcacac--cacgtta----ctagg-tttttcctgtctcactggttc--cttcccct------------------------gctctcctttt-----------tatgtttcctgctttc------ttcctcag----ccttctct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     662525 226 +   2037526 -aaagaaa--tgctcccac--caagaccatg---gaggcccctctcgtt----gctggtg-------------------gatactcgttcattttccccgccaccac---------c---caacagcagcgttccacgcc--gcccttccttccttccttccttcctcccctagc-ttcatcacac--cacgtta----ctagg-tttttcctgtctcactggctc--ctttccct------------------------gctctcctttt---t------atatgtttcctgctttc------ttcctcag----ccttctct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75330182 208 + 122973662 -aaagaaa--tgctcccat--caagaccatg---gaggcccctctcgtt----gctggtg-------------------gatactc-ttcaatctccatgccaccac---------c---catcatcagcattccacgcc--gc------------ccttccttcctcccctagc-ttcatcacac--catgtta----ctagg-tttttcctgtctcactggctc--ctttccct------------------------gctctttt--------------tatatttcctcctttc------ttcctcag----ccttctct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31242304 218 + 172585720 -AAAGAAA--TGCTCCCAC--CAAGACCATG---GAGGCCCCTCTCGTT----GCTGGTG-------------------GATATTC-TTCATTCTCCGTGCCACCACCCATCACACC---CATCAGCAGCATTCCACACC--GC------------CCTTCCTTCCTCCTCTAGC-TTCATCACAC--CATGTTA----C-----TTTTTCCTGTCTCACTGGATC--CTTTCCCT------------------------GCTCTCCTTTT---T------ATACGTTTCCTGCTTTC------TTCCTCAG----CCTTCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30531298 215 - 170955103 -AAAGAAA--TGCTC---C--CAAGACCATG---GAGGCCCCTCTCGTT----GCTGGTG-------------------GATATTC-TTCATTCTCCGTGCCACCACCCATCACACC---CATCAGCAGCATTCCACACC--GC------------CCTTCCTTCCTCCTCTAGC-TTCATCACAC--CATGTTA----C-----TTTTTCCTGTCTCACTGGATC--CTTTCCCT------------------------GCTCTCCTTTT---T------ATATGTTTCCTGCTTTC------TTCCTCAG----CCTTCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     827629 216 +   1495729 -AAAGAAA--TGCTCCCAC--CAAGACCATG---GAGGCCCCTCTCGTT----GCTGGTG-------------------GATATTC-TTCATTCTCCGTGCCACCACCCATCACACC---CATCAGCAGCATTCCACACC--GC------------CCTTCCTTCCTCCTCTAGC-TTCATCACAC--CATGTTA----C-----TTTTTCCTGTCTCACTGGATC--CTTTCCCT------------------------GCTCTCCTTTT-----------TATGTTTCCTGCTTTC------TTCCTCAG----CCTTCTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      50732 218 -    811324 -AAAGAAA--TGCTCCCAC--CAAGACCATG---GAGGCCCCTCTCGTT----GCTGGTG-------------------GATATTC-TTCAATCTCCGTGCCACCACCCATCACACC---CATCAGCAGCATTCCACACC--GC------------CCTTCCTTCCTCCTCTAGC-TTCATCACAC--CATGTTA----C-----TTTTTCCTGTCTCACTGGATC--CTTTCCCT------------------------GCTCTCCTTTT---T------ATATGTTTCCTGCTTTC------TTCCTCAG----CCTTCTCT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30081290 226 -  71996105 -AAAGAAA--TGCTCCCAC--CAAGACCATG---GAGGCCCCTCTCGTT----GCTGGTG-------------------GATATTC-TTCATTCTCCGTGCCACCACCCATCACACC---CATCAGCAGCATTCCACACC--GC----ccttccttccttccttcctcctCTAGC-TTCATCACAC--CATGTTA----C-----TTTTTCCTGTCTCACTGGATC--CTTTCCCT------------------------GCTCTCCTTTT---T------ATATGTTCCCTGCTTTC------TTCCTCAG----CCTTCTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      88075 218 +    779361 -AAAGAAA--TGCTCCCAC--CAAGACCATG---GAGGCCCCTCTCGTT----GCTGGTG-------------------GATATTC-TTCAATCTCCGTGCCACCACCCATCACACC---CATCAGCAGCATTCCACACC--GC------------CCTTCCTTCCTCCTCTAGC-TTCATCACAC--CATGTTA----C-----TTTTTCCTGTCTCACTGGATC--CTTTCCCT------------------------GCTCTCCTTTT---T------ATATGTTTCCTGCTTTC------TTCCTCAG----CCTTCTCT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     751482 224 -   1829203 -AAAGAAA--TGCTCCCAC--CAAGACCATG---GAGGCCCCTCTCGTT----GCTGGTG-------------------GATATTC-TTCATTCTCCGTGCCACCACCCATCACAGC---CATCAGCAGCATTCCACACC--GC--------CCTTCCTTCCTTCCTCCTCTAGC-TTCATCACAC--CATGTTACTAGC-----TTTTTCCTGTCTCACTGGATC--CTTTCCCT------------------------GCTCTCCTTTT-----------TATGTTTCCTGCTTTC------TTCCTCAG----CCTTCTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30911226 226 + 171630274 -AAAGAAACATGCTCCCAC--CAACACCGTG---GAGGCCTCTCTCGCT----GCTGATGGATAGTNNNNNNNNNNGATGATAGTC-TTCATTTT-CACGCCACCAC---------C-TACATCAGCAGCATG-CACACC--GC--------C------TCCTCATCTCCCTAGC--TCATCACAC--CATG-TA----CTAGG-TTTTTCCTGTCTCACTGGCTC--CTTTCCCT------------------------GCTCTCC--TT-----------TATGTTTCCTGCTTTC------TTCCTCAG----CCTTCTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            82428 217 -    750284 -aaagaaac-tgctcccac--caacagcatg---gaggcccctctcgtt----gctggtg-------------------gatagtc-ttcattctgcacgccaccac---------cttacatcagcagtatgccacacg--gc--------ccttccttccttcctcctctagc-ttcatcccac--catgtta----ctagg-tttttcctgtctcactggctc--ctttccct------------------------gctctcc--cc-----------tttgtttcctgctttc------ttcctcag----ccttctct
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1330436 219 -   1771730 -aaagaaac-tgctcccac--caacaccatg---gaggcccctctcgtt----gctggtg-------------------gatagcc-ttcattctcgacgccaccac---------cttacatcagcagcatgccgcacc--gc--------ccttccttccttcctcccctagc-ttcatcacac--catgtta----ctagg-tttttcctgtctcactggccc--ctttccct------------------------tctctcctttt-----------tatgtttcctgctttc------ttcctcag----cctTCTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      30345 219 -    566255 -AAAGAAAC-TGCTCCCGC--CAACACCATG---GAGGCCCCTCTCGTT----GCTGGTG-------------------GATAGTC-GTCATTCTCCACGCCACCAC---------CTTACATCAGCAGCATGCCACACC--GC--------CCTTCCTTCCTTCCTCCCCTAGC-TTCATCACAC--CATGTTA----CTAGG-TTTTTCCTGTCTCACTGGCTC--CTTTCCCT------------------------GCTCTCCTTTT-----------TATGTTTCCTGCTTTC------TTCCTCAG----CCTTCTCT
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           694859 220 +  18854210 -GAAGaac--tgcacctat--caagctcaca---aaggcctcccttgct----ggcaagg-------------------gatactc-ttcatt---catgtcaccac---------c---tctcagcagcattctgcaca--tc-------attctccttccttcttcccacagc-ctcatcacacaacacttta----ctaggtttttccctgtcttgctggctcctctttccct------------------------gacctcccttt---t------atacattctttgctttc------ttcctcag----tcttctct
i otoGar3.GL873550         I 269 C 0
s mm10.chr17               58993795 244 -  94987271 ------AA--TGGGTCCACTGCACCACAATGTTCAATGCCACCC----T----GACCCTG-------------------CCCACCC-CCCACCCCCAACCCAATTACCTTCAACCTC---CATCGTC----TTCCTCTGG--GC---------CTTCTCTCCTCCCTCCCCT-------------T--TACATTC----CTGG--TTTTCTCTAACTGGCTTACTC--CTCTTCCCAGACAAGAAGTAAGACGCCTGCAAATTCTCCTCTC---TTCCTACACAGGttctcagcttacactacactctgaagatgacctattcc
i mm10.chr17               C 0 C 0
s canFam3.chr12              371045 223 +  72498081 AATGGAAC--TTCTCCCAA--CAGTATCACC---AAGGTTCCTTGTGGCCAAATCTAGTG-------------------ACCACTC-CTCATTCTTGGGGTCCTCAC---------C---CCTCAGGGGCATCCCACATTTGGC------------CCTTCCTTCTTACCTGAGCTTTCATTGCA---CACTTTC----CAGGT-TTCATCCTGTCT-GCTGGCTTTTCTTCCCCT------------------------GCTCTCCCTTTGATT-------TCTGTTCTCCACTTTC------TTCCTTAG----CCTTCTTC
i canFam3.chr12            C 0 I 191
e micMur3.chr6               646086 1791 + 123392446 I
e proCoq1.NW_012149775v1     677785 833 -   1411461 I

a score=187942.000000
s hg38.chr6_GL000254v2_alt  1886457 15 +   4827813 gctccccacacctat
s panTro5.chr6             30732119 15 + 175400573 gctccccacacctat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31155774 15 + 173848474 gctccccacacctat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     662751 15 +   2037526 gctccccacacctat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75330390 15 + 122973662 gctccccacacctat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31242522 15 + 172585720 GCTCCCCAcacctat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30531513 15 - 170955103 GCTCCCCAcacctat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     827845 15 +   1495729 GCTCCCCAcacctat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      50950 15 -    811324 GCTCCCCAcacctat
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30081516 15 -  71996105 GCTCCCCAcacctat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      88293 15 +    779361 GCTCCCCAcacctat
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     751706 15 -   1829203 GCTCCCCAcacctat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30911452 15 + 171630274 GCTCCCCAcacctat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            82645 15 -    750284 gctccccacacctat
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1330655 15 -   1771730 GCTCCCCAcacctat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      30564 15 -    566255 GCTCCCCACACCTAT
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           695079 12 +  18854210 tctcc---catctac
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58994039 15 -  94987271 tctcctcccacctct
i mm10.chr17               C 0 C 0
e micMur3.chr6               646086 1791 + 123392446 I
e proCoq1.NW_012149775v1     677785 833 -   1411461 I
e canFam3.chr12              371268 191 +  72498081 I

a score=2231761.000000
s hg38.chr6_GL000254v2_alt  1886472 204 +   4827813 atgttgatgatgcccaaatctctgtctccagccacgacctctctttccccaagctccatttgcataaactgtct-ctgatgagatttagggcgcttacggtggtatggctgtagacaactgtctcaggaaacagacc---catgacccacccagttgccaagtcagaaacagg-at-gtatactcttgacttgt-------ctct----ctccc----ctacaca
s panTro5.chr6             30732134 204 + 175400573 atgttgatgatgcccaaatctctgtctccagccacgccctctctttccccaagctccatttgcataaactgtct-ctgatgagatttagggcgcttacggtggtatggctgtagacaactgtctcaggaaacagacc---catgacccacccagttgccaagtcagaaacagg-at-gtatactcttgacttgt-------ctct----ctccc----ctacacg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31155789 204 + 173848474 atgttgatgatgcccaaatctctgtctccagccacgacctctctttccccaagctccatttgcataaactgtct-ctgatgagatttagggcgcttacggtggtatggctgtagacaactgtctcaggaaacagacc---catgacccacccagttgccaagtcagaaacagg-at-gtatactcttgacttgt-------ctct----ctccc----ctacacg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     662766 203 +   2037526 atgttgatgatgcccaaatctctgtctccagccacgacctctctttccccaagctccatttgcataaactgtct-ctgatgagatttagggcgcttacggtggtatggctgtagacaactgtctcaggaaac-gacc---catgacccacccagttgccaagtcagaaacagg-at-gtatactcttgacttgt-------ctct----ctccc----ctacacg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75330405 204 + 122973662 atgttgatgatgcccaaatctctgtctccagccacgacctctctttccccaagctccatttgcataaattgtct-cagatgagatgtagggcgctcacggtggtatggctgtagacagctgtctcaggaaacagacc---tat-acccacccagttgccaagtcagaaacaggaat-atatactcttgacttgt-------ctct----ctccc----ctacacg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31242537 201 + 172585720 atgtccatgatgcccaaatctctgtttccagcca---cctctctttccccgagctccatttgcataaactgtct-cagatgagatccagggcgctcacggtggtatgactgtagacAACTGTCTCAGGAAACAGACC---CATGACACACccagttgccaagtcagaaacagg-at-gtatactcttgacgtgt-------ctct----ctccc----ctacatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30531528 201 - 170955103 atgtccatgatgcccaaatctctgtttccagcca---cctctctttccctgagctccatttgcataaactgtct-cagatgagatccagggcgctcacggtggtatgactgtagacAACTGTCTCAGGAAACAGACC---CATGACACACccagttgccaagtcagaaacagg-at-gtatactcttgacgtgt-------ctct----ctccc----ctacatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     827860 201 +   1495729 atgtccatgatgcccaaatctctgtttccagcca---cctctctttacccgagctccatttgcataaactgtct-cagatgagatccagggcgctcacggtggtatgactgtagacAACTGTCTCAGGAAACAGACC---CATGACACAGccagttgccaagtcagaaacagg-at-gtatactcttgacgtgt-------ctct----ctccc----ctacatg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      50965 201 -    811324 atgtccatgatgcctaaatctctgtttccagcca---cctctctttccccgagctccatttgcataAACGGTCt-cagatgagatccagggcgctcacggtggtatgactgtagacAACTGTCTCAGGAAACAGACC---CATGACACACccagttgccaagtcagaaacagg-at-gtatactcttgacgtgt-------ctct----ctccc----ctacatg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30081531 201 -  71996105 atgtccatgatgcccaaatctctgtttccagcca---cctctctttccccgagctccatttgcataaactgtct-cagatgagatccagggcgctcacggtggtatgactgtagacAACTGTCTCAGGAAACAGACC---CATGACACACccagttgccaagtcagaaacagg-at-gtatactcttggcgtct-------ctct----ctccc----ctacatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      88308 201 +    779361 atgtccatgatgcctaaatctctgtttccagcca---cctctctttccccgagctccatttgcataAACGGTCt-cagatgagatccagggcgctcacggtggtatgactgtagacAACTGTCTCAGGAAACAGACC---CATGACACACccagttgccaagtcagaaacagg-at-gtatactcttgacgtgt-------ctct----ctccc----ctacatg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     751721 199 -   1829203 atgtcgatgatgcccaaa--tctgtttccagcca---cctctctttccccaagctgcatttgcataaactgtct-cagatgagatccagggcgctcacggtggtatggctgtagacAACTGTCTCAGGAAACAGACC---CATGACACACccagttgccaagtcagaaacagg-at-gtatactcttgacgtgt-------ctct----ctccc----ctacatg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30911467 201 + 171630274 atgttgatgatgcgcaaa--tctgtctccagccacgacctctctttccccaagctccatttgcataaactgtct-cagatgagatccagggcactcatggtggtatggctgtaaacAACTGTCTCAGGAAACAGA-C---CATGACCCACccagttgccaagtgagaaagagg-at-gtatactcttgacttct-------ccct----ctccc----ctacaca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            82660 204 -    750284 atgttgatgatgcccaaatctctgtctccagccacgacctctctttccccaaactctatttgcataaactgtct-cagatgagatctagggtgctcacggtggtatggctatagacaactgtctcaggaaacaaacc---catgacccacccggttgccaagtgagaaacagg-at-gtatactcttgacttgt-------ccct----ctccc----ctacaca
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1330670 204 -   1771730 aagttgatgatgcctaaatctctgtctccagccacgacctctctttccccaagctccatttgcataaactgtct-cagatgagatccagggtgctcacggtggtatggctgtagacAACTGTCTCAGGAAACAGACC---CATGACCCACTcagttgccaagtgagaaacagg-at-gtatactcttgacttat-------ccct----ctccc----ctacaca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      30579 203 -    566255 ATGTTGATGATGCCCAAATCTCGGTCTCCAGCCACGACCTCTCTTTCCCCAAGCTCCATTTGCATAAACTGTCt-cagatgagatccagggcactcacggtggtatggctgtagacAACTGTCTCAGGAAACAGA-C---CATGACCCACccagttgccaagtgagaaacagg-at-gtatattcttgacttgt-------ccct----ctccc----ctacaca
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           695091 163 +  18854210 atgttgatgatgcc-gcatctctgactccggccaccacctccctttccttaagctccacttgcATAAAc-------------------------------------------------ccatctcagaaaacagcccttatacaacccacccagttgcaaagtcggaaaggtg-atggtacactcttcacctgt-------ccctctccctccc----ccacaca
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58994054 162 -  94987271 atgctgatggtgcccaa-----tgtctccagccagcatctc---ttccccaagctgtgcttgcatatactgtctgcatat-------------------------------------attgtctctggagatcg-cc---cataacaaaca----tgccaaactAGAGCCATG-CT-ACACTCTGTTCCCTTACTCTACAACTCC----ATCAC----CAacaca
i mm10.chr17               C 0 I 67
s canFam3.chr12              371459 159 +  72498081 ATGTCGATGCCACCCAAG--TCTGTCTGCAGTCAGGACCCCCTTTCCTCCAAGCTCCACTCAAATAAAC------C------------------------------------------CTGTCACAGAAAATGGCAC---CATCACTCACCCAGTTGCCAAGTCAGAAACAGG-GT-ATGCAATCTTGACTTGT-------CCTT----CTCCCTCCTCCACACA
i canFam3.chr12            I 191 C 0
e micMur3.chr6               646086 1791 + 123392446 I
e proCoq1.NW_012149775v1     677785 833 -   1411461 I

a score=2914468.000000
s hg38.chr6_GL000254v2_alt  1886676 219 +   4827813 gcaaaacaa-tcccaagac---atgtcaattct---atctcctgagcaacccataaaacgatttctcttctttccatcttccattaccctaattctggtgttcattctctctccctgggatggctgtaaaagcctctgatttc--tcccctttccaaaccagtctccacactgcaaccatagtga----tctaaggcacaattctcacc----ttttcagtcttaggcttaaagtt---
s panTro5.chr6             30732338 219 + 175400573 gcaaaacaa-tcccaagac---atgtcaattct---atctcctgagcaacccataaaacgatttctcttctttccatcttccattaccctaattctggtgttcattctctctccctgggatggctgtaaaagcctctgatttc--tcccctttccaaaccagtctccacactgcaaccatagtga----tctaaggcacaattctcacc----ttttcagtcttaggcttaaagtt---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31155993 219 + 173848474 gcaaaacaa-tcccaagac---atgtcaattct---atctcctgagcaacccataaaacgatttctcttctttccatcttccattaccctaattctggtgttcattctctctccctgggatggctgtaaaagcctctgatttc--tcccctttccaaaccagtctccacactgcaaccatagtga----tctaaggcacaattctcacc----ttttcagtcttaggcttaaagtt---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     662969 219 +   2037526 gcaaaacaa-tcccaagac---atgtcaattct---atctcctgaggaacccataaaacgatttctcttctttccatcttccattaccctaattctggtgtccattctctctccctgggatggctgtaaaagcctctgatttc--tcccctttccaaaccagtctccacactgcaaccatagtga----tctaaggcacaattctcacc----ttttcagtcttaggcttaaagtt---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75330609 216 + 122973662 gcaaaacaa-tcccaagac---atgtcaattct---atctcctgagcaacccataaaacaa---cttttctttccatcttccattaccctaaatctggtgttcattctctctccctgggatggctgtaaaagcctttgatttt--tcccctttccaaaccagtctccacactgcaactatagtga----tctaaggcacaattctcacc----ttttcagtcttaggcttgaagtt---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31242738 223 + 172585720 gcaaaacaa-tcccaagac---atgtcatttct---atctcctaagcaacccataaaacgatttctcttctttccatcttccattaccctaatgctagtgttcattctctccccctggggtggctgtaaaagcctctgatttc--tcccctttccaaaccagtctccacactgcaattatagtgatctttctaaggcacaattctcacc----ttttcagtcttaggcttaaagtt---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30531729 223 - 170955103 gcaaaacaa-tcccaagac---atgtcatttct---atctcctaagcaacccataaaacgatttctcttctttccatcttccattaccctaatgctagtgttcattctctccccctgggatggctgtaaaagcctctgatttc--tcccctttccaaaccagtctccacactgcaattatagtgatctttctaaggcacaattctcacc----ttttcagtcttaggcttaaagtt---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     828061 223 +   1495729 gcaaaacaa-tcccaagac---atgtcatttct---atctcctaagcaacccataaaacgatttctcttctttccatcttccattaccctaatgctagtgttcattctctccccctgggatggctgtaaaagcctctgatttc--tcccctttccaaaccagtctccacactgcaattatagtgatctttctaaggcacaattctcacc----ttttcagtcttaggcttaaagtt---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      51166 223 -    811324 gcaaaacaa-tcccaagac---atgtcatttct---atctcctaagcaacccataaaacgatttctcttctttccatcttccattaccctaatgctagtgttcattctctccccctgggatggctgtaaaagcctctgatttc--tcccctttccaaaccagtctccatactgcaattatagtgatctttctaaggcacaattctcacc----ttttcagtcttaggcttaaagtt---
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30081732 223 -  71996105 gcaaaacaa-tcccaagac---atgtcatttct---atctcctaagcaacccataaaacgatttctcttctttccatcttccattaccctaatgctggtgttcattctcttcccctgggatggctgtaaaagcctctgatttc--tcccctttccaaaccagtctccacactgcaattatagtgatctttctgaggcacaattctcacc----ttttcagtcttaggcttaaagtt---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      88509 223 +    779361 gcaaaacaa-tcccaagac---atgtcatttct---atctcctaagcaacccataaaacgatttctcttctttccatcttccattaccctaatgctagtgttcattctctccccctggcatggctgtaaaagcctctgatttc--tcccctttccaaaccagtctccatactgcaattatagtgatctttctaaggcacaattctcacc----ttttcagtcttaggcttaaagtt---
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     751920 223 -   1829203 gcaaaacaa-tcccaagac---atgtcatttct---atctcctaagcaacccataaaaccatttttcttctttccatcttccattaccctaatgctagtattcattctctccccctgggatggctgtaaaagcgtctgatttc--ttccctttccaaaccagtctccacactgcaattatagtgctctttctaaggcacaattctcacc----ttttcagtcttaggcttaaagtt---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30911668 226 + 171630274 gcaaaacaa-tcccaagatagaatcccaattct---atctcctaagaaacccataaaacgatttctcttctttccatcttccattaccctaattctggtgtccattctctctctcagcgatggctgcaaaagcctctgatttc--tcccctttccaaaccagtctccacactgcaactatagtgatctttctaaggcacaattctcacc----ttttcagtcttaggcttaaactt---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            82864 224 -    750284 gcgaaacaa-tcccaagatagaatcccaattct---aactcctaagcaacccataaaacgatttctcttctttccatcttccattactctaattctggtgtccattctctctccctgtgatggctgcaaaagcctctgatttc--tcccttttccaaaccagtctccaaactgcaactaca--gatctttctaaggcacaattctcacc----ttttcagtcttaggcttaaactt---
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1330874 226 -   1771730 gcgaaacaa-tcccaagatagaatgccaattct---aactcctaagcaacccataaaacgatttctcttctttccatcttccattactctaattctggtgtccattctctctccctgcgatggctgcaaaagcctctgatttc--tcccctttccaaaccagtctccacactgcaactatagtgatctttctaaggcacaattctcacc----ttttcagtcttaggcttaaactt---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      30782 229 -    566255 gcaaaacaa-tcccaaggtagaatcccaattctatcatctcctaagcaacccataaaacgatttctcttctttccatcttccattaccctaattctggtgtccattctctctccctgcgatggctgcaaaagcctctgatttc--tcccctttccaaaccagtctccacactgcaactatagtgatctttctaaggcacaattctcacc----ttttcagtcttaggcttaaactt---
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     678618 218 -   1411461 gcaaagcaa-tcccaagaa---ctgtcagttgt---atctcctaagcatcccataaaactagttc-tctctttccatcttctactacctcaattctggtttccattct----ccctgtgacggctgcagaagtctctgctctc--tcccctttccaagccagtctccacattgcaaccacagtgatctttctaaggcataatgctctcc----tttttagtcttaggcttaaagtt---
i proCoq1.NW_012149775v1   I 833 I 3
s otoGar3.GL873550           695254 218 +  18854210 -gaaaacaa-tcccaagaa---ctgttgatttt---atctcctaagcaactcataaaattagttcttttctttctgtcttctacaaccttag--ccagtttttattctcctcccctggtttgattgcaaaagtctctgatctc--tcccctttccaaaccagtctccacactgcaatgacagcagtctttctaaggcacaattttctcc------tttagtcttaggtttaaagtt---
i otoGar3.GL873550         C 0 I 3
s mm10.chr17               58994283 194 -  94987271 gagaAGCAA-TCCAACAGC---CTG-----TCC---ATCTATCAAACAGTC----AAACAGTCTTTCCCC----------------CACTGTTTCTGG--TTCATTTTCCTT--CTAGGATGGCTATAAAACCCTCTGGTCACT-TTCCCCTTCCAAATAAATGTCCAAGTTGCAAACACAGTGG----TCTACAGC-CAATTATTTCCCTGCCTTTTAGTCCTAGGGTTAAATTT---
i mm10.chr17               I 67 I 2744
s canFam3.chr12              371618 213 +  72498081 GCAAAACAATTCCCCAGAC---AT--TAACCTT---ATCTCCTAAGCACCCCATAAAACTGTTTCTCTTCTTTCCATCAGCCACTAC-TTAATTCTAGTTTCCATTCTCTTCCCCTGACATCACTTCAAAAGCCTTGGATCTCTCTCCCCTTTCCAAACCAGTTTCCATACTGC------AGTGA----TCTAAGGCACAAATCTCTCC----TTGT---TCTTAGGCCTCAAATTCTT
i canFam3.chr12            C 0 C 0
e micMur3.chr6               646086 1791 + 123392446 I

a score=2444788.000000
s hg38.chr6_GL000254v2_alt  1886895 196 +   4827813 caacatccctctggatacagtctaaatctttaacacggctgaaaaggcccagcaagagctggaccaagcccacctctccagcttcacctttcctcatttctcctttgcaccctctgcct--------ct-gaacaagttacagtcttccaaagttgtcatgtttcttgacctttgctgtctcctctgcc---cagaatgcaatttcc----c
s panTro5.chr6             30732557 196 + 175400573 caacgtccctctggatacagtctaaatctttaacacggctgaaaaggcccagcaagagctggaccaagcccacctctccagcttcacctttcctcatttctcctttgcaccctctgcct--------ct-gaacaagttacagtcttccaaagttgtcatgtttcttgacctttgctgtctcctctgcc---cagaatgcaatttcc----c
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31156212 194 + 173848474 caacgtccctctggatacagtctaaatctttaacacggctgaaaaggcccagcaagagctggaccaagcccacctctccagcttcacctttcctcatttctcctttgcaccctctgcct--------ct-gaacaagtt--agtcttccaaagttgtcatgtttcttgacctttgctgtctcctctgcc---cagaatgcaatttcc----c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     663188 196 +   2037526 caacgtccctctggatacagtctaaatctttaacacggctgaaaaggcccagcaagagctagaccaagcccacctctccagcttcacctttcctcatttctcctttgcaccctctgcct--------ct-gaacaagttacagtcttccaaagttgtcatgtttcttgacctttgctgtctcctctgcc---cagaatgcaatttcc----c
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75330825 198 + 122973662 caacgtccctctggataaagtctaaatctttaacatggctgaaaaggcccagcaagagctggaccaagcccacctctccagcatcacctttcctcatttctcctttgcaccctctgcct--------ct-gaacaagttacagtcttccaaagttgtcatgtttcttgacctttgctgtctcctctgcc---cagaatgcgatttcc--ctc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31242961 198 + 172585720 cagtgttcctctggataaagcctgaatctttaacatggctacaaaggcccagcaagagctggaccaagcccacctctccagcttcacctttcctcatttctcctttgcaccctctgcct--------ct-gaacaagttatagtcttccaaagttgtcatgttccttgacctttgctgcctcctctgcc---cagaatgctatttcc--ctc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30531952 198 - 170955103 caatgttcctctggataaagcctgaatctttaacatggctacaaaggcccagcaagagctggaccaagcccacctctccagcttcacctttcctcatttctcctttgcaccctctgcct--------ct-gaacaagttatagtcttccaaagttgtcatgttccttgacctttgctgcctcctctgcc---cagaatgctatttcc--ctc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     828284 198 +   1495729 caatgttcctctggataaagcctgaatctttaacatggctacaaaggcccagcaagagctggaccaagcccacctctccagcttcacctttcctcatttctcctttgcaccctctgcct--------ct-gaacaagttatagtcttccaaagttgtcatgttccttgacctttgctgcctcctctgcc---cagaatgctatttcc--ctc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      51389 198 -    811324 caatgttcctctggataaagcctgaatctttaatatggctaaaaaggcccagcaagagctggaccaagcccacctctccagcttcacctttcctcatttctcctttgcaccctctgcct--------ct-gaacaagttatagtcttccaaagttgtcatgttccttgacctttgctgcctcctctgcc---cagaatgctatttcc--ctc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30081955 197 -  71996105 caatgttcctctggataaagcctgaatctttaaca-ggctaaaaaggcccatcaagagctggaccaagcccacctctccagcttcacctttcctcatttctcctttgcaccctctgcct--------ct-gaacaagttatagtcttccaaagttgtcatgttccttgacctttgctgcctcctctgcc---cagaatgctatttcc--ctc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      88732 198 +    779361 caatgttcctctggataaagcctgaatctttaatatggctaaaaaggcccagcaagagctggaccaagcccacctctccagcttcacctttcctcatttctcctttgcaccctctgcct--------ct-gaacaagttatagtcttccaaagttgtcatgttccttgacctttgctgcctcctctgcc---cagaatgctatttcc--ctc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     752143 197 -   1829203 caatgtttctctggataaagtctgaatctttaacatggctaaaaaggcccagcaagagctggaccaagcccacctctccagcttcacctttcctcatttctcctttgcaccctctgcct--------ct-gaacaagttacagtcttccaaagttgtcatgttccttg-cctttgctgcctcctctgcc---cagaatgctatttcc--ctc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30911894 197 + 171630274 caatgtccctctggataaagtct-aatctttaacacagctgacaaggcccagcaagagctggaccaagcccacctctccagcttcacctttcctcatttctcctttgcaccctctgccc--------ct-gaacaagttacaatcttccaaagttgtcatattccttaacctttactgtctcctctgcc---tggaatgctattccc--ctc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            83088 198 -    750284 cggtgtccctctggataaagtct-aatctttaacacagctgacaaggcccagcaagagctggaccaagcccacctctccagcttcacctttcctcatttctccttcgcacccactgccc--------ct-gaacaagttacaatcttcc-aagttgtcatattccttgacctttgctgtctcctctgcc---tggaatgctattcccctctc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1331100 199 -   1771730 caatgtccctctggataaagtct-aatctttaacacagctgacaaagcccagcaagagctggaccaagcccacctctccagcttcacttttcctcatttttcctttgcaccctctgccc--------ct-gaacaagttacaatcttccaaagttgtcatgttccttgacatctgctgtctcctctgcc---tggaatgctattcccctttc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      31011 199 -    566255 caatgtccctctggataaagtct-aatctataacacagctgacaaggcccagcaagagctggaccaagcccacctctccggcttcacctttcctcatttctcctttgtaccctctgccc--------ct-gcacaagttacaatcttccaaagttgtcatattccttgacctttgctgtctcctctgcc---tggaatgctattcccctctc
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     678839 187 -   1411461 caatgttcctctggataaagcctacatctttaatatggctgacaaggccctgcaagaactggaccaagc---------------cacctttccccacttctcccttgcaccctctgccccagccatgct-gaacaagtt--agtcttccgaagctgtcatgttccttggcctttgctgttccctctgcc---tggaatgcccttccc--t--
i proCoq1.NW_012149775v1   I 3 I 36
s otoGar3.GL873550           695475 202 +  18854210 cagtgttccac---ataaagcctacacctttaacatggctgacaaggttctgcaagaggtggaccaagctcatctgtctagcttcacctttctccacttctctcctgcaccctctgccccaggcatgctaaaataagttacaatctcccaaagttgtcatgttccttgacctttgctgtcccctctgcc---gggaatgctcttccc--c--
i otoGar3.GL873550         I 3 I 6
s canFam3.chr12              371831 193 +  72498081 CACCATTCCTCTGGATAAAGCCTACATCTTTAGCACAGCTCACAAATTCCAGcaagagctggcccaagcctccctctcctgcttcacctttctttacctgtcccttgcactgtaagcccgagtcctgct-gaatatgtt--ggtcttcccagtttgtcatg------------tgcttcttcctagaccttatggaatgctcttgcc--c--
i canFam3.chr12            C 0 I 6
e micMur3.chr6               646086 1791 + 123392446 I
e mm10.chr17               58994477 2744 -  94987271 I

a score=254536.000000
s hg38.chr6_GL000254v2_alt  1887091 22 +   4827813 tgtctggcta--actcctgtccag
s panTro5.chr6             30732753 22 + 175400573 tgtctggcta--actcctgtccag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31156406 22 + 173848474 tgtctggcta--actcctgtccag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     663384 22 +   2037526 tgtctggcta--attcctgtccag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75331023 22 + 122973662 tgtctgacta--actcctatccag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31243159 22 + 172585720 tgtctggata--actcctgcccag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30532150 22 - 170955103 tgtctggata--actcctgcccag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     828482 22 +   1495729 tgtctggata--actcctgcccag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      51587 22 -    811324 tgtctggata--actcctgcccag
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082152 22 -  71996105 tgtctggata--actcctgcccag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      88930 22 +    779361 tgtctggata--actcctgcccag
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     752340 22 -   1829203 tgtctggcta--actcctgcccag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30912091 22 + 171630274 tgtctggaaa--actcctgcccag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            83286 22 -    750284 tgtctggcta--actcctgcccag
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1331299 22 -   1771730 tgtctgacta--actcctgcccag
i cebCap1.NW_016107755v1   C 0 I 155
s aotNan1.NW_018511496v1      31210 22 -    566255 tgtctggcaa--actcctgcccag
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           695683 24 +  18854210 tctatggttaacactcttgccaag
i otoGar3.GL873550         I 6 I 1
s canFam3.chr12              372030 22 +  72498081 tgcctggcta--acccctgctcag
i canFam3.chr12            I 6 C 0
e micMur3.chr6               646086 1791 + 123392446 I
e mm10.chr17               58994477 2744 -  94987271 I
e proCoq1.NW_012149775v1     679026 36 -   1411461 I

a score=36645.000000
s hg38.chr6_GL000254v2_alt  1887113 5 +   4827813 cattt
s panTro5.chr6             30732775 5 + 175400573 cattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31156428 5 + 173848474 cattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     663406 5 +   2037526 cattt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75331045 5 + 122973662 cattt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31243181 5 + 172585720 tattt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30532172 5 - 170955103 tattt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     828504 5 +   1495729 tattt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      51609 5 -    811324 tattt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082174 5 -  71996105 tattt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      88952 5 +    779361 tattt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     752362 5 -   1829203 cattt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30912113 5 + 171630274 tcttt
i calJac3.chr4             C 0 I 1
s saiBol1.JH378327            83308 5 -    750284 tcttT
i saiBol1.JH378327         C 0 I 146
s aotNan1.NW_018511496v1      31232 5 -    566255 tcttt
i aotNan1.NW_018511496v1   C 0 I 1
s otoGar3.GL873550           695708 4 +  18854210 -cctt
i otoGar3.GL873550         I 1 I 1
s canFam3.chr12              372052 5 +  72498081 tcttc
i canFam3.chr12            C 0 I 1
e micMur3.chr6               646086 1791 + 123392446 I
e mm10.chr17               58994477 2744 -  94987271 I
e proCoq1.NW_012149775v1     679026 36 -   1411461 I
e cebCap1.NW_016107755v1    1331321 155 -   1771730 I

a score=15300.000000
s hg38.chr6_GL000254v2_alt  1887118 1 +   4827813 g
s panTro5.chr6             30732780 1 + 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31156433 1 + 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     663411 1 +   2037526 g
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75331050 1 + 122973662 g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31243186 1 + 172585720 g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30532177 1 - 170955103 g
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     828509 1 +   1495729 g
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      51614 1 -    811324 g
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082179 1 -  71996105 g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      88957 1 +    779361 g
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     752367 1 -   1829203 g
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30912119 1 + 171630274 g
i calJac3.chr4             I 1 C 0
s saiBol1.JH378327            83459 1 -    750284 g
i saiBol1.JH378327         I 146 C 0
s cebCap1.NW_016107755v1    1331476 1 -   1771730 G
i cebCap1.NW_016107755v1   I 155 C 0
s aotNan1.NW_018511496v1      31238 1 -    566255 g
i aotNan1.NW_018511496v1   I 1 C 0
s otoGar3.GL873550           695713 1 +  18854210 g
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12              372058 1 +  72498081 g
i canFam3.chr12            I 1 C 0
e micMur3.chr6               646086 1791 + 123392446 I
e mm10.chr17               58994477 2744 -  94987271 I
e proCoq1.NW_012149775v1     679026 36 -   1411461 I

a score=1315630.000000
s hg38.chr6_GL000254v2_alt  1887119 109 +   4827813 gcctcagcatggacatctgttcctctaggacg----cttcccctgattcaccaagaccagcttaactgcccctactggctgttcctatagcaattctttaccacagacta----ctg
s panTro5.chr6             30732781 109 + 175400573 gcctcagcatggacatctgtacctctaggacg----cttcccctgattcaccaagaccagcttaactgcccctactggctgttcctatagcaattctttaccacggacta----ctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31156434 109 + 173848474 gcctcagcatggacatctgtacctctaggacg----cttcccctgattcaccaagaccagcttaactgcccctactggctgttcctatagcaattctttaccacggacta----ctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     663412 109 +   2037526 gcctcagcatggacatctgttcctctaggacg----cttcccctcattcaccaagaccagcttaactgcccctactggctgttcctatagcaattctttaccatggacta----ctg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75331051 113 + 122973662 gcctcagcatagacacctgttcctctaggaggcttccttcccctgattcaccaagaccagcttaactgcccctactggctgttcctatagcaattctttaccatggacta----ctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31243187 108 + 172585720 gcctcagcacagacatctgttcctctaggagg----cttcccctgattcaccaacaccagtttaacc-cccctactggctgttcctaaagcaattctttaccatggacta----ctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30532178 108 - 170955103 gcctcagcacagacatctgttcctctaggagg----cttcccctgattcaccaacaccagtttaacc-cccctactggctgttcctaaagcaattctttaccatggacta----ctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     828510 108 +   1495729 gcctcagcacagacatctgttcctctaggagg----cttcccctgattcaccaacaccagtttaacc-cccctactggctgttcctaaagcaattctttaccatggacta----ctg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      51615 108 -    811324 gcctcagcacagacatctgttcctctaggagg----cttcccctgattcaccaacaccagtttaacc-cccctactggctgttcctacagcaattctttaccacggacta----ctg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082180 108 -  71996105 gcctcagtacagacatctgttcctctaggagg----cttcccctgattcaccaacaccggtttaacc-cccctactggctgttcctacagcaATTCTTTACCACGGACTA----CTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      88958 108 +    779361 gcctcagcacagacatctgttcctctaggagg----cttcccctgattcaccaacaccagtttaacc-cccctactggctgttcctacagcaattctttaccacggacta----ctg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     752368 108 -   1829203 gcctcagcacagacatctgttcctctaggagg----cttcccctgattcaccaacaccagtttaacc-cccctactggctgttcctacagcaattctttaccatggacta----ctg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30912120 109 + 171630274 gcctcagcatggacatctcgtcctctaggagg----atttgcctgattcaccaagaccagcttaactgcgcctactggctgttcctgtagcaattctttaccatagacta----ctg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            83460 109 -    750284 gcctcagcatggacatctgttcctctaggaag----attcccctgattcaccaagaccagcttaactgtgcctactggctgttcctgtagcaattcttcaccatagacta----ctg
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1331477 109 -   1771730 GCCTCAGCATGGACATCTGTTCCTCTAGGAGG----ATTCCCCTGATTCACCAAGACCAGCTTAACTGCACCTACTAGCTGTTCCTGTAGCAATTCTTTACCATAGACTA----CTG
i cebCap1.NW_016107755v1   C 0 I 21
s aotNan1.NW_018511496v1      31239 109 -    566255 gcctcagcatggacatctgttcctctaggagg----attcgcctgattcaccaagaccagcttaactgcacctactggctgttcctgtagcaattctttaccatagacta----ctg
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     679062 106 -   1411461 gcctcagcttggac--ctgttcctctaggagc----cttcccctgacacgccatgacgggcttaact-gccccgttggatgttcccatagcaattcatcaccgtggacta----ctg
i proCoq1.NW_012149775v1   I 36 C 0
s otoGar3.GL873550           695714 110 +  18854210 gcctcatttttgac--ctgttcccctaggagc----ctttccctgacacaccaagactggcttaact-gccccactgggtgttcccatagcaATTCATTACCATGGACTGATTCTTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              372059 105 +  72498081 gcctcagcttggacctccattcctctag--------attcttttgactcatcaaaactggcttacctgctcCTGTTGAGTATTTTCAAACCAATTATTTACAATAGACTA----CTG
i canFam3.chr12            C 0 C 0
e micMur3.chr6               646086 1791 + 123392446 I
e mm10.chr17               58994477 2744 -  94987271 I

a score=53424.000000
s hg38.chr6_GL000254v2_alt  1887228 7 +   4827813 atttttt
s panTro5.chr6             30732890 7 + 175400573 atttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31156543 7 + 173848474 atttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     663521 7 +   2037526 atttttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75331164 7 + 122973662 atttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31243295 7 + 172585720 attttta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30532286 7 - 170955103 attttta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     828618 7 +   1495729 attttta
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      51723 7 -    811324 attttta
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082288 7 -  71996105 ATCTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89066 7 +    779361 attttta
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     752476 7 -   1829203 attttta
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30912229 7 + 171630274 attatta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            83569 7 -    750284 attatta
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      31348 7 -    566255 attatta
i aotNan1.NW_018511496v1   C 0 C 0
s canFam3.chr12              372164 7 +  72498081 ATTTTTT
i canFam3.chr12            C 0 I 12
e micMur3.chr6               646086 1791 + 123392446 I
e mm10.chr17               58994477 2744 -  94987271 I
e proCoq1.NW_012149775v1     679168 0 -   1411461 C
e otoGar3.GL873550           695824 0 +  18854210 C
e cebCap1.NW_016107755v1    1331586 21 -   1771730 I

a score=28768.000000
s hg38.chr6_GL000254v2_alt  1887235 12 +   4827813 gtg----------------tttgtttTG
s panTro5.chr6             30732897 12 + 175400573 gtg----------------tttgtttTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31156550 12 + 173848474 gtg----------------tttgtttTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     663528 12 +   2037526 gtg----------------tttgtttTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75331171 12 + 122973662 gtg----------------tttgtttTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31243302 12 + 172585720 gtg----------------tttgtttTg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30532293 12 - 170955103 gtg----------------tttgtttTg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     828625 12 +   1495729 gtg----------------tttgtttTg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      51730 12 -    811324 gtg----------------tttgtttTg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082295 12 -  71996105 GTG----------------TTTGTTTTg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89073 12 +    779361 gtg----------------tttgtttTg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     752483 12 -   1829203 gtg----------------tttgtttTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30912236  6 + 171630274 CTA---------------------TTT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            83576 27 -    750284 ttagttttttgtttgtttTTTTTTTTT-
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      31355 12 -    566255 tta---------------ctattattt-
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     679168  9 -   1411461 ------------------acttctgtt-
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           695824  9 +  18854210 ------------------TTTTTTTTT-
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               646086 1791 + 123392446 I
e mm10.chr17               58994477 2744 -  94987271 I
e canFam3.chr12              372171 12 +  72498081 I
e cebCap1.NW_016107755v1    1331586 21 -   1771730 I

a score=643756.000000
s hg38.chr6_GL000254v2_alt  1887247 53 +   4827813 TTTTGGCAGTCTGACATAACTT--TATACTAATGCAGCTTCTAGCCCTGTccccc
s panTro5.chr6             30732909 53 + 175400573 TTTTGGCAGTCTGACATAACTT--TATACTAATGCAGCTTCTAGCCCTGTccccc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31156562 53 + 173848474 TTTTGGCAGTCTGACATAACTT--TATACTAATGCAGCTTCTAGCCCTGTccccc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     663540 53 +   2037526 TTTTGGCAGTCTGACATAACTT--TATACTAATGCAGCTTCTAGCCCTGTccccc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75331183 55 + 122973662 TTTTGGCAGTCTGACATAACTTAATATACTAATGCAACTTCCAGCCCTGTctccc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31243314 55 + 172585720 ttttggcagtctgacataacttgatatactaatgcagcttctagtcctgtccccc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30532305 55 - 170955103 ttttggcagtctgacataacttgatatactaatgcagcttctagtcctgtccccc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     828637 55 +   1495729 ttttggcagtctgacataacttgatatactaatgcagcttctagtcctgtccccc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      51742 55 -    811324 ttttggcagtctgacataacttgatatactaatgcagcttctagtcctgtccccc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082307 55 -  71996105 ttttggcagtctgacataacttgatatactaatgcagcttctagtcctgtccccc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89085 55 +    779361 ttttggcagtctgacataacttgatatactaatgcagcttctagtcctgtccccc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     752495 55 -   1829203 TTTTGGCAGTCTGACATAACTTCATATACTAATGcagcttctcgtcctgtcccct
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30912242 55 + 171630274 TTTTGGCAGTCTGACATAACTTGATTTACTAATGCAGCTTCTAGCCCTGTTCCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            83603 55 -    750284 TTTTGGCAGTCTGACATAACTTGATTTACTAATGCAGCTTCTAGCCCTGTTCccc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1331607 55 -   1771730 TTTTGGCAGTCTGACATAACTTAATTTACTAATGCAGCTTCTAACCCTGTTCCCC
i cebCap1.NW_016107755v1   I 21 C 0
s aotNan1.NW_018511496v1      31367 55 -    566255 ttttggcagtctgACATAACTTGATTTACTAATGCAGCTTCTAGCCCTGTTCCCC
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     679177 55 -   1411461 tTTTTGCTGTATTATATAACTTGCTATATTAAAACAGCTTCCGGCCCTGCcccct
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           695833 55 +  18854210 TTTTTGCTGTCTTACATAACTTGCTATATTAAAACTGCTTCTACCCCTTCCCCCT
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               646086 1791 + 123392446 I
e mm10.chr17               58994477 2744 -  94987271 I
e canFam3.chr12              372171 12 +  72498081 I

a score=3149430.000000
s hg38.chr6_GL000254v2_alt  1887300 258 +   4827813 actccttcctgatcagtatcccaatgtccctcctatatggagccaccactaccccacaggatcctgt---accacccttctcccagaacttatcaca-----ctttttttttgtaattgt----------gtttccattctccaataaattgtgagcgccacaaagaaccatttctatctcacttaccacttggaagtgactggcaggtagtaattgctcaacaaatgttctatgagtgaatgaatCCTTGGGATAATTATAGTACTAACCATCTT
s panTro5.chr6             30732962 258 + 175400573 actccttcctcatcagtatcccaatgtccctcctatatggagccaccactaccccacaggatcctgt---accacccttctcccagaagttatcaca-----ctttttttttctaattgt----------gtttccattctccaataaattgtgagcgccacaaagaaccatttctatctcacttaccacttggaagtgactggcaggtagtaattgctcaacaaatgttctatgagtgaatgaatCCTTGGGATAATTATAGTACTAACCATCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31156615 258 + 173848474 actccttcctcatcagtatcccaatatccctcctatatggagccaccactaccccacaggatcctgt---accacccttctcccagaacttatcaca-----tcttttttttgtaattgt----------gtttccattctccaataaattgtgagcgccacaaagaaccatttctatctcacttaccacttggaagtgactggcaggtagtaattgctcaacaaatgttctatgagtgaatgaatCCTTGGGATAATTATAGTACTAACCATCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     663593 258 +   2037526 actccttcctaatcagtatcccaatgtccctcctatatggagccaccactaccccacaggatcctgt---accacccttctcccagaacttatcaca-----ctttttttttgtaattgt----------gtttccattctccaataaattgtgagcgccacaaagaaccatttctatctcacttaccacttggaagtgactggcaggtagtaattgctcaacaaatgttctatgagtgaatgaatCCTTGGGATAATTATAGTACTAACCATCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75331238 255 + 122973662 actccttcctgatcagtatcccaatgtccctcctatatggagccaccactaccccacaggatcctgt---accacccttctcccagaacttatcaca-----c-ttttttttgtaattgt----------gtttccattctccaataaattgtgagttccacaaagaaccatttctatcccacttaccacttggaagtgactggcagatagtaattgctcaacaaatgttc--tgagtgaatgaatCCTTGGGATAATTATAGTACTAACCACCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31243369 265 + 172585720 actccttcctgatcactatcccaaggtccctcctatatggagccaccactACCCCACTGGATCCTGTACCACCACCCTTCTCCCAGAACTta-cacatttttttttttttttgtaattgtcc--------gtttccattctccaataaattgtgagctccacaaagaaccatttctatctcacttaccacttggaagtgacaggcagatagtaattgctcaacaaatgttc--tgagtgaatgaatccttggggcaattatggtactaaccacctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30532360 266 - 170955103 actccttcctgatcactatcccaaggtccctcctatatggagccaccactgCcccactggatcctgtaccaccacccttctcccagaacttatcacatttttttttttttttgtaattgtcc--------gtttccattctccaataaattgtgagctccacaaagaaccatttctatctcacttaccacttggaagtgacaggcagatagtaattgctcaacaaatgttc--tgagtgaatgaatCCTTGGGGCAATTATGGTACTAACCACCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     828692 266 +   1495729 actccttcctgatcactatcccaaggtccctcctatatggagccaccactACcccactggatcctgtaccaccacccttctcccagaacttatcacatttttttttttttttgtaattgtcc--------gtttccattctccaataaattgtgagctccacaaagaaccatttctatctcacttaccacttggaagtgacaggcagatagtaattgctcaacaaacgttc--tgagtgaatgaatccttggggcaattatggtactaaccacctt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      51797 264 -    811324 actccttcctgatcactatcccaaggtccctcctatatggagccaccactACcccactggatcctgtaccaccacccttctcccagaacttatcaca--tttttttttttttgtaattgtcc--------gtttccattctccaataagttgtgagctccacaaagaaccatttctatctcacttaccacttggaagtgacaggcagatagtaattgctcaacaaatgttc--tgagtgaatgaatCCTTGGGGTAATTATGGTACTAACCACCTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082362 261 -  71996105 actccttcctgatcactatcccaagatccctcctatatggagccaccactACcccactggatcctgtaccaccacccttctcccagaacttatcac-----attttttttttgtaattgtac--------gtttccattctccaataaattgtgagctccacaaagaaccatttctatctcacttaccacttggaagtgacaggcagatagtaattgctcaacaaatgttc--tgagtgaatgaatCCTTGGGGTAATTATGGTACTAACCACCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89140 262 +    779361 actccttcctgatcactatcccaaggtccctcctatatggagccaccactACcccactggatcctgtaccaccacccttctcccagaacttatcaca----attttttttttgtaattgtcc--------gtttccattctccaataagttgtgagctccacaaagaaccatttctatctcacttaccacttggaagtgacaggcagatagtaattgctcaacaaatgttc--tgagtgaatgaatCCTTGGGGTAATTATGGTACTAACCACCTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     752550 257 -   1829203 actccttcctgatcactatcccaaggtccctcctatatggagccaccactaccccactggatcctgtaccaccacccttctcccagaacttatcaca-----tttttttttggtaattgtcc--------atttccattctccaataaattgtgagctccacaaagaaccatttctatctc----accacttggaagtgacaggcagatagtaattgctcaacaaatgttc--tgagtgaatgaatCCTTGGGGTAATTATGGTACTAACCACCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30912297 244 + 171630274 ACTTCtccctgatcagtaccccaagatccctcctatatg------ccactaccccacaggatcctgt---accaaccttctcccagaacttatcaca------cttatttttataattgt------------ttctattctccaataaactgtgagctccacaaagaaccatttctatctcacttaccacttggaagtaat-ggc----agtaatttctcaacaaatgttctatgagtgaatgaatCCTTTGGATAATTATGGTACTAACCACCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            83658 254 -    750284 acttctccctgatcagaatcccaagatccctcctatatggagccaccactaccccacaggatcctgt---accaaccttctcccagaacttatcaca------cttatttttataattgt------------ttctattctccaataaactgtgagttccacaaagaaccatttctatctcacttaccacttggaagtaat-ggcagatagtaattgctcaacaaatgttctatgagtgaatgaatCCTTGGGATAATTATGGTACTAACCACCTT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1331662 254 -   1771730 ACTTCTCTCTGATCAATATCCCAAGATCCCTCCTATATGGAGCCACCACTACcccacaggatcctgt---accaaccttctcccagaacttatcaca------cttatttttataattgt------------ttctattctccaataaactgtgagctccataaagaaccatttctatctcacttaccacttggaagtaat-ggcagatagtaatagctcaacaaatgttctatgagtgaatgaatCGTTGGGATAATTATCCTACTAACCACCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      31422 250 -    566255 ACTTCTCCCTGATCAGTATCCCAAGATCCCTCCTATATGGAGCCACCACTACcccacaggatcctgt---accaaccttctcccagaacttatcaca------cttatttttataattgt------------ttctattctccgataaac--taagctccacaaagaaccatttctatctcacttaccacttggaagtaat-ggcagatagtaattgctcaacaaatgttc--tgagtgaatgaatCCTTGGGATAATTATGGTACTAACCAGCTT
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               647877 262 + 123392446 actccctccttatcagtatcccaaggcccctcctatatggagccaccactatcccctgggatcctgt---accacacttctcccagcaggtatcgca-------cttagttggtaactgtctatttaattgttgccattctccattaaactgtgagctccacaaaggaccatttctctctc----accacttagcagtgactggcagatagtaatagcttcataaatgttctgcaggtgaatgaatCCTTGGGATGATTATAGTACTATCCACCTT
i micMur3.chr6             I 1791 C 0
s proCoq1.NW_012149775v1     679232 262 -   1411461 actccctcctgatcagtatcccaaggcccctcctatatggagccaccactatcccctgggatcctgt---accacctttctcccagcacgtatcaga-------ctttgtttgtaattgtctatttaatggttgccattctccactaaattgtgagctccacaaagaaccatctctctctc----accacttagcagtgactggcagagagtaatcgcctcacaaatgttctgtgggtgaatgaatCCTTGGGTTGATTATAGTACTATCCACCTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           695888 251 +  18854210 ACTCCCTCCCAATCAATATCGCAAGGTCCCTCCTATATGTAGTCACCACTATCCAGtgggatcttgt---accacccttctcccagcacttatctca-------cttc----gtaattttctattt----gtttccattctccattaaattgtgagctcta-aaaggactatttctatctc----accacttagcagtgactggc-gatagcaat-gcctgataaatgttctgtgggtgaatgaatCCTCAGGATGATAATAGTACTATCCACCTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58994477 2744 -  94987271 I
e canFam3.chr12              372171  12 +  72498081 I

a score=982294.000000
s hg38.chr6_GL000254v2_alt  1887558 91 +   4827813 ATTTAGTTATGACAGTTCAATAGAAACACGTAAAATAATGCTT----------TTATAGTTTACAT---ACTGCTATAGAG-CTATTGTATTATATTATTATTAT
s panTro5.chr6             30733220 91 + 175400573 ATTTAGTTATGATAGTTCAATAGAAACACGTAAAATAATGCTT----------TTATAGTTTACAT---ACTGCTATAGAG-CTATTGTATTATATTATTATTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31156873 91 + 173848474 ATTTAGTTATGATAGTTCAATAGAAACATGTAAAATAATGCTT----------TTATAGTTTACAT---ACTGCTATAGAG-CTATTGTATTATATTATTATTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     663851 91 +   2037526 ATTTAGTTATGACAGTTCAATAGAAACATGTAAAATAATGCTT----------TTATAGTTTACAT---ACTGCTATAGAG-CTATTGTATTATATTATTATTAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75331493 91 + 122973662 ATTTAGTTATGACAGTTCAACAGATACATGTAAAATAATGCTT----------TTATAGTTTACAT---ACTGCTATAGAG-CTATTGTATTATATTATTATTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31243634 89 + 172585720 attcagttatgacagttcagtaaatacatgtaacataatgctt----------ttatagtttacat---actgctatagag-ctattgtat--tattattattat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30532626 89 - 170955103 ATTCAGTTATGACAGTTCAGTAAATACATGTAACATAATGCTT----------TTATAGTTTACAT---ACTGCTATAGAG-CTATTGTAT--TATTATTATTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     828958 86 +   1495729 attcagttatgacagttcagtaaatacatgtaacataatgctt----------ttatagtttacat---actgctatagag-ctattg-----tattattattat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52061 89 -    811324 ATTCAGTTATGACAGTTCAGTAAATACATGTAACATAATGCTT----------TTATAGTTTACAT---ACTGCTATAGAG-CTATTGTAT--TATTATTATTAT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082623 83 -  71996105 ATTCAGTTATGACAGTTCAATAAATACATGTAACATAATGCTT----------TTATAGTTTACAT---ACTACTATAGAG-CTACTG--------TATTATTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89402 89 +    779361 ATTCAGTTATGACAGTTCAGTAAATACATGTAACATAATGCTT----------TTATAGTTTACAT---ACTGCTATAGAG-CTATTGTAT--TATTATTATTAT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     752807 86 -   1829203 ATTCAGTTATGACAGTTCAATAGATACATGTAACATAATGCTT----------TTATAGTTTACAT---ACTGCTATAGAG-CTATTG-----TATTATTATTAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30912541 80 + 171630274 ATTTAGTTTTGACAGCTGAATAGATATACATAAAATAATGCTT----------TTATAGTTTACAC---ACTGCTATAGAA-CTATTG-----------TATTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            83912 80 -    750284 ATTTAGTTTTGACAGTTGAATAGATATACATAAAATAATGCTT----------TTATAGTTTACAC---ACTGCTATAGAA-CTATTA-----------TATTAT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1331916 77 -   1771730 ATTTAGTTTTGACAGTTGAATAGATATACATAA---AATGCTT----------TTATAGCTTACAC---ACTGCTATAGAA-CTATTA-----------TATTAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      31672 80 -    566255 ATTTAGTTTTGACAGTTGAATAGATATACATAAAATAATGCTT----------TTATAGTTTACAC---ACTGCTATAGAA-CTATTA-----------CATTAT
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               648139 91 + 123392446 CCTTAGTTATGACAGTTCAATACAAACATGTAAAGTAATTCTT----------TTATAATTTATAT---AGTACCATACAA-TTATTGTATTATACTATTAGTGT
i micMur3.chr6             C 0 I 8
s proCoq1.NW_012149775v1     679494 91 -   1411461 CCTTAGTTATGACAGTTCAATAGACACATGTAAAGTAATTCTT----------TTATAATTTATAT---AGTACCATAGAA-GTATTGCATTATATTATTAGTGT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           696139 97 +  18854210 -TTTAGTTATGACAGTTCAGTAGGTACATATAAAGTAATTCTTAAAGCTTACATAATGAATTCAAT---AATACCATAGAA-TTATTG---TATATTATTAGTGC
i otoGar3.GL873550         C 0 I 8
s canFam3.chr12              372183 77 +  72498081 ACTTCGTTATGA-AGTTCAATGGATACATGTAA--------------------T--TAATTTACATAGAATTATTGTAGAATTTACTG-----CATAATTATTGT
i canFam3.chr12            I 12 C 0
e mm10.chr17               58994477 2744 -  94987271 I

a score=1748.000000
s hg38.chr6_GL000254v2_alt  1887649 1 +   4827813 -T
s panTro5.chr6             30733311 1 + 175400573 -T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31156964 1 + 173848474 -T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     663942 1 +   2037526 -T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75331584 1 + 122973662 -T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31243723 1 + 172585720 -c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30532715 1 - 170955103 -T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829044 1 +   1495729 -t
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52150 1 -    811324 -T
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082706 1 -  71996105 -T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89491 1 +    779361 -T
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     752893 1 -   1829203 -T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30912621 1 + 171630274 -T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            83992 1 -    750284 -T
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1331993 1 -   1771730 -T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      31752 1 -    566255 -T
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     679585 1 -   1411461 -C
i proCoq1.NW_012149775v1   C 0 I 7
s otoGar3.GL873550           696244 1 +  18854210 -T
i otoGar3.GL873550         I 8 C 0
s canFam3.chr12              372260 1 +  72498081 A-
i canFam3.chr12            C 0 C 0
e micMur3.chr6               648230 8 + 123392446 I
e mm10.chr17               58994477 2744 -  94987271 I

a score=123469.000000
s hg38.chr6_GL000254v2_alt  1887650 12 +   4827813 CTATTCCTACCC---
s panTro5.chr6             30733312 12 + 175400573 CTATTCCTACCC---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31156965 12 + 173848474 CTATTCCTACCC---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     663943 12 +   2037526 CTATTCCTACCC---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75331585 12 + 122973662 CTATTCCTACCC---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31243724 12 + 172585720 ctattcctacct---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30532716 12 - 170955103 CTATTCCTACCT---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829045 12 +   1495729 ctattcctacct---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52151 12 -    811324 CTATTCCTACCT---
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082707 12 -  71996105 CTATTCCTACCT---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89492 12 +    779361 CTATTCCTACCT---
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     752894 12 -   1829203 CTATTCCTCCTT---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30912622 12 + 171630274 CTATCCCTACCC---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            83993 12 -    750284 CTATTCCTACCC---
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1331994 12 -   1771730 CTATTCCTACCC---
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      31753 12 -    566255 CTATTCCTACCC---
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           696245 12 +  18854210 CTATTTCttttt---
i otoGar3.GL873550         C 0 I 4
s canFam3.chr12              372261 15 +  72498081 TTATAAGTATCTAGC
i canFam3.chr12            C 0 C 0
e micMur3.chr6               648230  8 + 123392446 I
e mm10.chr17               58994477 2744 -  94987271 I
e proCoq1.NW_012149775v1     679586  7 -   1411461 I

a score=404548.000000
s hg38.chr6_GL000254v2_alt  1887662 36 +   4827813 TCTATTGCTTGAGAGTAGGA--TA---T-TGCCTTATTCAAT
s panTro5.chr6             30733324 36 + 175400573 TCTATTGCTTGAGAGTAGGA--TA---T-TGCCTTATTCAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31156977 36 + 173848474 TCTATTGCTTGAGAGTAGGA--TA---T-TGCCTTATTCAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     663955 36 +   2037526 TCTATTGCTTGAGAGTAGGA--TA---T-TGCCTTATTCAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75331597 36 + 122973662 TCTATTGCTTGAGGGTAGGA--TA---T-TGCCTTATTCGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31243736 36 + 172585720 tccattccttgagggtagga--ta---c-tgccttattcaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30532728 36 - 170955103 TCCATtccttgagggtagga--ta---c-tgccttattcaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829057 36 +   1495729 tccattccttgagggtagga--ta---c-tgccttattcaat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52163 36 -    811324 TCTATTCCTTGAGGGTAGGA--TA---C-TGCCTTATTCAAT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082719 36 -  71996105 TCTATTCCTTGAGGGTAGGA--TA---C-TGCCTTATTCAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89504 36 +    779361 TCTATTCCTTGAGGGTAGGA--TA---C-TGCCTTATTCAAT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     752906 36 -   1829203 TCTATtccttgagggtagga--ta---t-tgccttattcaat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30912634 36 + 171630274 TCTATTCCTTGAGGGTAAGA--TC---T-TGCTTTATTAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            84005 34 -    750284 TCTATTCCTTGAGGGTAAGA--TC---T-TGC--CATTAAAT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1332006 36 -   1771730 TCTATTCCTTGAGGGTAAGA--TC---T-TGCCTTATTAAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      31765 34 -    566255 TCTATTCCTTGAGGG--ATT--CC---T-TGCCTTATTAAAT
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               648238 38 + 123392446 TCTATTCCTTGAGGTTAGGACCTA---T-TACCTTATTCCAT
i micMur3.chr6             I 8 C 0
s proCoq1.NW_012149775v1     679593 38 -   1411461 TCTATTCCTTGAGGGCAGGACCTA---T-TACCTTATTCAAT
i proCoq1.NW_012149775v1   I 7 C 0
s otoGar3.GL873550           696261 41 +  18854210 ttttttttttagagacagagtctcactt-tgtcacactcaat
i otoGar3.GL873550         I 4 I 243
s canFam3.chr12              372276 37 +  72498081 TCTTTTACTCGAGGGTTCAG--CC---TATGCTTTATTCAAT
i canFam3.chr12            C 0 C 0
e mm10.chr17               58994477 2744 -  94987271 I

a score=104196.000000
s hg38.chr6_GL000254v2_alt  1887698 10 +   4827813 TTTGGTTATT-
s panTro5.chr6             30733360 10 + 175400573 TTTGGTTATT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31157013 10 + 173848474 TTTGGTTATT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     663991 10 +   2037526 TTTGGTTATT-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75331633 10 + 122973662 TTTGGTTATT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31243772 10 + 172585720 tttggttatt-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30532764 10 - 170955103 tttggttatt-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829093 10 +   1495729 tttggttatt-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52199 10 -    811324 TTTGGTTATT-
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082755 10 -  71996105 TTTGGTTATT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89540 10 +    779361 TTTGGTTATT-
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     752942  9 -   1829203 tttgg-tatt-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30912670 10 + 171630274 TTCGGTTATT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            84039 10 -    750284 TTTGGTTATT-
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1332042 10 -   1771730 TTTGGTTATT-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      31799 10 -    566255 TTTGGTTATT-
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               648276 10 + 123392446 TTTTTTTTTT-
i micMur3.chr6             C 0 I 5
s proCoq1.NW_012149775v1     679631 10 -   1411461 TTTTTTTTTT-
i proCoq1.NW_012149775v1   C 0 I 6
s canFam3.chr12              372313  6 +  72498081 -----TTCTTT
i canFam3.chr12            C 0 C 0
e mm10.chr17               58994477 2744 -  94987271 I
e otoGar3.GL873550           696302 243 +  18854210 I

a score=277948.000000
s hg38.chr6_GL000254v2_alt  1887708 24 +   4827813 GTCCCAG--AACTCAGGGATATATGT
s panTro5.chr6             30733370 24 + 175400573 GTCCCAG--AACTCAGGGACATATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31157023 24 + 173848474 GTCCCAG--AACTCAGGGACATATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     664001 24 +   2037526 GTCCCAG--AACTCAGGGACATATGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75331643 24 + 122973662 GTCCCAG--AACTCAGGGACATATGT
i nomLeu3.chr1a            C 0 I 298
s rheMac8.chr4             31243782 24 + 172585720 gtcccag--aactcagggacaaatgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30532774 24 - 170955103 gtcccag--aactcagggacaaatgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829103 24 +   1495729 gtcccag--aactcagggacaaatgt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52209 24 -    811324 GTCCCAG--AACTCAGGGACAAATGT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082765 24 -  71996105 GTCCCAG--AACTCAGGGACAAATGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89550 24 +    779361 GTCCCAG--AACTCAGGGACAAATGT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     752951 24 -   1829203 gtcccaa--aactcagggacaaatgt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30912680 24 + 171630274 GTCTCAG--AACTCAGGGAGATATGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            84049 24 -    750284 GTTGCAG--AACTCAGGGAGACATGT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1332052 24 -   1771730 GTCTCAG--AACTCAGGGAGATATGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      31809 24 -    566255 GTCTCAG--AACTCAGGGAGATATGT
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               648291 19 + 123392446 GTCCCAG--AACTTGA-----CATGC
i micMur3.chr6             I 5 C 0
s proCoq1.NW_012149775v1     679647 19 -   1411461 GTCCCAG--AACTCGG-----CATGC
i proCoq1.NW_012149775v1   I 6 C 0
s otoGar3.GL873550           696545 19 +  18854210 GTCCTAG--AAATCAG-----CATGT
i otoGar3.GL873550         I 243 C 0
s canFam3.chr12              372319 21 +  72498081 GTTTTAGAAAACTCAG-----CATGC
i canFam3.chr12            C 0 C 0
e mm10.chr17               58994477 2744 -  94987271 I

a score=83270.000000
s hg38.chr6_GL000254v2_alt  1887732 5 +   4827813 -CTGGC
s panTro5.chr6             30733394 5 + 175400573 -CTGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31157047 5 + 173848474 -CTGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     664025 5 +   2037526 -CTGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75331965 5 + 122973662 -cTGGC
i nomLeu3.chr1a            I 298 C 0
s rheMac8.chr4             31243806 5 + 172585720 -ctggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30532798 5 - 170955103 -ctggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829127 5 +   1495729 -ctggc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52233 5 -    811324 -CTGGC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082789 5 -  71996105 -CTGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89574 5 +    779361 -CTGGC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     752975 5 -   1829203 -ttggc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30912704 5 + 171630274 -CTGGC
i calJac3.chr4             C 0 I 313
s saiBol1.JH378327            84073 5 -    750284 -CTGGC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1332076 5 -   1771730 -CTGGC
i cebCap1.NW_016107755v1   C 0 I 311
s aotNan1.NW_018511496v1      31833 5 -    566255 -CTGGC
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               648310 5 + 123392446 -CTGGT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     679666 5 -   1411461 -CTGGT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           696564 5 +  18854210 -CTGGC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              372340 6 +  72498081 CTTGGC
i canFam3.chr12            C 0 C 0
e mm10.chr17               58994477 2744 -  94987271 I

a score=176955.000000
s hg38.chr6_GL000254v2_alt  1887737 13 +   4827813 ATATATTGTTTTT
s panTro5.chr6             30733399 13 + 175400573 ATATATTGTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31157052 13 + 173848474 ATATATTGTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     664030 13 +   2037526 ATATATTGTTTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75331970 13 + 122973662 ATATATTGTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31243811 13 + 172585720 atatattgttttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30532803 13 - 170955103 atatattgttttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829132 13 +   1495729 atatattgttttc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52238 13 -    811324 ATATATTGTTTTC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082794 11 -  71996105 ATATATTGTTT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89579 13 +    779361 ATATATTGTTTTC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     752980 13 -   1829203 atatattgctttc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30913022 13 + 171630274 ATATATTGTTTTC
i calJac3.chr4             I 313 C 0
s saiBol1.JH378327            84078 11 -    750284 --ATGttgttttt
i saiBol1.JH378327         C 0 I 318
s cebCap1.NW_016107755v1    1332392 13 -   1771730 ATATACTGTTTTC
i cebCap1.NW_016107755v1   I 311 C 0
s aotNan1.NW_018511496v1      31838 13 -    566255 ATATAttgttttt
i aotNan1.NW_018511496v1   C 0 I 310
s micMur3.chr6               648315 13 + 123392446 ACATATTATTTTC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     679671 13 -   1411461 ACATATTATTTTC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           696569 13 +  18854210 ACATACTGTTTTC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              372346 13 +  72498081 ACATATTGCTTTC
i canFam3.chr12            C 0 C 0
e mm10.chr17               58994477 2744 -  94987271 I

a score=1727795.000000
s hg38.chr6_GL000254v2_alt  1887750 129 +   4827813 AACCAATTTTTGTTGACTGTATCAATGATTGTAAGAAGT----GAACAAAGGGCCAGATAATTGAACTATCCTGGACCACACAC-AGCTACCCTGTTCCAGAAGCAGGACT---ATAATCCCATCTGGAAAAAGGGA
s panTro5.chr6             30733412 129 + 175400573 AACCAATTTTTGTTGACTGTATCAATGATTGTAAGAAGT----GAACAAAGGGCCAGATAATTGAACTATCCTGGACCACACAC-AGCTACCCTGTTCCAGAAGCAGGACT---AGAATCCCATCTGGAAAAAGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31157065 129 + 173848474 AACCAATTTTTGTTGACTGTATCAATGATTGTAAGAAGT----GAACAAAGGGCCAGATAACTGAACTATCCTGGACCACACAC-AGCTACCCTGTTCCAGAAGCAGGACT---AGAATCCCATCTGGAAAAAGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     664043 129 +   2037526 AACCAATTTTTGTTGACTGTATCAATGATTATAAGAAGT----GAACAAAGGGCCAGATAATTGAACTATCCTGGACCACACAC-AGCTACCCTGTTCCAGGAGCAGGACT---AGAATCCCACCTGGAAAAAGGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75331983 128 + 122973662 AACCAATTTTTGTTGACTGTATCAATGATTATAAGAAGT----GAACAAAGGGCCAAATAATTCAACTATCCTGGACCACACAC-AGCTACCCTGTTCCAG-ACCAGGACT---AGAATCCCATCTGGAAAAAGGAA
i nomLeu3.chr1a            C 0 M 489
s rheMac8.chr4             31243824 129 + 172585720 aatcaatttttgttgactgtatcaatGAttataataagt----gaacaaaggcccatataactgaactatcctggaccacacac-agctaccctgttccagaaccaggact---agaatccCATCTGGAAAAAGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30532816 129 - 170955103 aatcaatttttgttgactgtatcaatGAttataataagt----gaacaaaggcccatataactgaactatcctggaccacacac-agctaccctgttccagaaccaggact---agaatccCATCTGGAAAAAGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829145 129 +   1495729 aatcaatttttgttgactgtatcaatGAttataataagt----gaacaaaggcccatataactgaactatcctggaccacacac-agctaccctgttccagaaccaggact---agaatccCATCTGGAAAAAGGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52251 129 -    811324 AATCAATTTTTGTTGACTGTATCAATGAttataataagt----gaacaaaggcccatataactgaactatcctggaccacacac-agctaccctgttccagaaccaggact---agaatccCATCTGGAAAAAGGGA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082805 127 -  71996105 --TCAATTTTTGTTGACTGTATCAATGATTATAATAAGT----GAACAAAGGCCCATATAACTGAACTATCCTGGACCACACAC-AGCCACCCTGTTCCAGAACCAGGACT---AGAATCCCATCTGGAAAAAGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89592 129 +    779361 AATCAATTTTTGTTGACTGTATCAATGAttataataagt----gaacaaaggcccatataactgaactatcctggaccacacac-agctaccctgttccagaaccaggact---agaatccCATCTGGAAAAAGGGA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     752993 129 -   1829203 aaccaatttttgttgactgtatcaatGAttataataagt----gaacaaaggcccatataactgaactatcctggaccacacac-agctaccctgttccagaaccaggact---agaatccCATCTGGAAAAAGGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30913035 125 + 171630274 AACCAATTTTTGTTGACTGCATCAATGATTATAAGAAAT----GAACAAAGACCCAGATAATTGAACCATCCTGGAC----CAC-AGTTACCTTGTTCCAGAACCAGGACT---AGAATCCTGTCTGGAAAAAGGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            84407 126 -    750284 AACCAATTTTTGTTGACTGCATCAATGAttataataaat----gaac-aagacccagataattgaaccatcctagac--cacac-agttaccttgttccagaaccaggact---agaatctggtctGGAAAAAGGGA
i saiBol1.JH378327         I 318 C 0
s cebCap1.NW_016107755v1    1332405 130 -   1771730 AACCAATTTTTGTTGACTGCATCAATGATTATAAGAAAT----GAACAAAGACCCAGATAATTGAACCAGCCTGGAC--CACAC-AGTTACCTTGTTCCAGAACCAGGACTAGAAGAATCCTGTCTGGAAAAAGGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      32161 127 -    566255 AACCAATTTTTGTTGACTGTATCAATGATTATAAGAAAT----GAACAAAGACCCAGATAACTGAACCATCCTGGAC--CACAC-AGTTACCTTGTTCCAGAACCAGGACT---AGAATCCTGTCTGGAAAAAGGGG
i aotNan1.NW_018511496v1   I 310 C 0
s micMur3.chr6               648328 133 + 123392446 AACGAATTTTTGTTGATTGTATCAATGATTATAAGaaatgaaggaacagaggcccagataattgaactatcctagaccacatacaagctacc-tgttccagaaccaggaca---agaagccagtctGGAAAAAGAGA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     679684 131 -   1411461 TACCAATTTTTGTTGATTGTATC-ATGATTATAAGaaatgaaggagcagaggcccagataattgaactatcctggaccacgcac-agctacc-tgttccagaaccaggaca---agaactcagTCTGGAAAAAGAGA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           696582 119 +  18854210 AACCAAGTTTTGTTCATTGTACCAATAATTATA-------CAGGAATAGAGACCCAGATAATTGAACTATCCTGGACCACCCAG-TGTTACC-TGTT------CTAGGACT---AGAACCCAGTCTGGAAAAAGAGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              372359 125 +  72498081 AATTAACTTCTGTTGATT----CAGTGATCATAAGAAATTAAAAAACAGAGGCCCAGATAACTGAACTACCCTAGAGTACACAC-AGCTATCTTATTCCAGAAGTAAGATC---AGAACTCAGTCTG----ATgggg
i canFam3.chr12            C 0 C 0
e mm10.chr17               58994477 2744 -  94987271 I

a score=96921.000000
s hg38.chr6_GL000254v2_alt  1887879 7 +   4827813 AACTTGG
s panTro5.chr6             30733541 7 + 175400573 AGCTTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31157194 7 + 173848474 AGCTTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     664172 7 +   2037526 AGCTTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31243953 7 + 172585720 AACTTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30532945 7 - 170955103 AACTTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829274 7 +   1495729 AACTTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52380 7 -    811324 AACTTGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082932 7 -  71996105 AACTTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89721 7 +    779361 AACTTGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     753122 7 -   1829203 AACTTGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30913160 7 + 171630274 AGCTTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            84533 7 -    750284 AGCTTGG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1332535 7 -   1771730 AGCTTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      32288 7 -    566255 AGCTTGG
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               648461 7 + 123392446 AGCTTGG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     679815 7 -   1411461 AGCTTGG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           696701 7 +  18854210 AGCTTGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              372484 7 +  72498081 tacctgg
i canFam3.chr12            C 0 I 595
e mm10.chr17               58994477 2744 -  94987271 I
e nomLeu3.chr1a            75332111 489 + 122973662 M

a score=657365.000000
s hg38.chr6_GL000254v2_alt  1887886 60 +   4827813 AAG----TTGACATCTAAATGAAATTC---------------------------CAGCATGGATGAGAGAAGCCCTGATTTCTCTCCATCA
s panTro5.chr6             30733548 60 + 175400573 AAG----TTGACATCTAAATGAAATTC---------------------------CAGCATGGATGAGAGAAGCCCTGATTTCTCTCCATCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31157201 60 + 173848474 AAG----TTGACATCTAAATGAAATTC---------------------------CAGCATGGATGAGAGAAGCCCTGATTTCTCTCCATCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     664179 60 +   2037526 AAG----TTGACATCTAAATGAAATTC---------------------------CAGCATGGATGAGAGAAGCCCTGATTTCTCTCCATCA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31243960 60 + 172585720 AAG----TTGACATCTAAGTGAGATTC---------------------------CGGCATGGATGAGAGAAGCCCTGATTTCTCTCCATCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30532952 60 - 170955103 AAG----TTGACATCTAAGTGAGATTC---------------------------CGGCATGGATGAGAGAAGCCCAGATTTCTCTCCATCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829281 60 +   1495729 AAG----TTGACATCTAAGTGAGATTC---------------------------TGGCATGGATGAGAGAAGCCCTGATTTCTCTCCATCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52387 60 -    811324 AAG----TTGACATCTAAGTGAGATTC---------------------------CGGCATGGATGAGAGAAGCCCTGACTTCTCTCCATCA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082939 60 -  71996105 AAG----TTGACATCTAAGTGAGATTC---------------------------CGGCATGGATGAGAGAAGCCCTGATTTCTCTCCATCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89728 60 +    779361 AAG----TTGACATCTAAGTGAGATTC---------------------------CGGCATGAATGAGAGAAGCCCTGACTTCTCTCCATCA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     753129 60 -   1829203 AAG----TTGACAAGTAAGTGAGATTC---------------------------CGGCACGGATGAGAGAAGCCTTGCTTTCTCTCCATCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30913167 60 + 171630274 AAG----TTGACTTCTACATGAAATTC---------------------------CAGCATGGATGAGAGCAGCTCTGGTTTTTCTCCATCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            84540 60 -    750284 AAG----TTGACTTCTAAATGAAATTC---------------------------CAGCATGGATGAGAGCAGCTCTGGTTTTTCTCCATCA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1332542 60 -   1771730 AAG----TTGACTTCTAAATTAAATTC---------------------------CAGCACGGATGAGAGCATCTCTGGTTTTTCTCCATCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      32295 60 -    566255 AAG----TTGACTTCTAAATGAAATTC---------------------------CAGCATGGATGAGAGCAGCTCTGGTTTTTCTCCATCA
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               648468 64 + 123392446 AAGGAGCACAATGTCTAAATGAAGTTC---------------------------CAGCATGGATGAGAGAAGCACTGGTTTCTCTCCATCA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     679822 64 -   1411461 AAGGAACTCGATGTCTAAGTGAAGTTC---------------------------CAGCACGGATGAGAGAAGCACTAGTTTCTCTCCATCA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           696708 91 +  18854210 AAGGAACTCAATGTCTAAATGAAGTTCCAGCATGAATGAGATAAGGACTGGTTTCAGCATGAATGAGATAAGGACTGGTTTCTCTCCAACA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58994477 2744 -  94987271 I
e canFam3.chr12              372491 595 +  72498081 I
e nomLeu3.chr1a            75332111 489 + 122973662 M

a score=119303.000000
s hg38.chr6_GL000254v2_alt  1887946 12 +   4827813 AGAGACTAGCCA
s panTro5.chr6             30733608 12 + 175400573 AGACACTAGCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31157261 12 + 173848474 AGACACTAGCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     664239 12 +   2037526 AGAGACTAGCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31244020 12 + 172585720 AGAAACTAGCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30533012 12 - 170955103 AGAAACTAGCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829341 12 +   1495729 AGAAACTAGCCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52447 12 -    811324 AGAAACTAGCCA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30082999 12 -  71996105 AGAAACTAGCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89788 12 +    779361 AGAAACTAGCCA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     753189 12 -   1829203 AGAGACTAGCCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30913227 12 + 171630274 AGAGACTAATCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            84600 12 -    750284 AGAGACTCATCA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1332602 12 -   1771730 AGAAACTAATCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      32355 12 -    566255 AAAGACTAATCA
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               648532 11 + 123392446 GGG-ACTGGCCA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     679886 11 -   1411461 GGG-ACTGGCCA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           696799 12 +  18854210 GGACAGTGGCCA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              373086 12 +  72498081 AGAGACTGGCCA
i canFam3.chr12            I 595 C 0
e mm10.chr17               58994477 2744 -  94987271 I
e nomLeu3.chr1a            75332111 489 + 122973662 M

a score=1070975.000000
s hg38.chr6_GL000254v2_alt  1887958 74 +   4827813 ---GCTATGGAAGCCACCAGAGCCCCAGACCTCCATGGTCAAGTATTCACATAGT--AGACATGACCCAGACAAGAGGG
s panTro5.chr6             30733620 74 + 175400573 ---GCTATGGAAGCCACCAGAGCCCCAGACCTCCATGGTCAAGTATTCACATAGT--AGACATGACCCAGACAAGAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31157273 74 + 173848474 ---GCTATGGAAGCCACCAGAGCCCCAGACCTCCATGGTCAAGTATTCACATAGT--AGACATGACCCAGACAAGAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     664251 74 +   2037526 ---GCTATGGAAGCCACCAGAGCCCCAGACCTCCATGATCAAGTATTCACATAGT--AGACATGACCCAGACAAGAGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75332604 74 + 122973662 ---GCTATGGAAGCCACTAGAGCCCCAGACCTCCATCGTCAAGTATTCACATAGT--AGACATGACCCAGACAAGAGAG
i nomLeu3.chr1a            M 489 C 0
s rheMac8.chr4             31244032 74 + 172585720 ---GCTATGGAAGCCACCAGGGCCCCAGACCTCCATAATCAAGTATTCACATAGT--AGACGTGACCCAGACAAGAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30533024 74 - 170955103 ---GCTATGGAAGCCACCAGGGCCCCAGACCTCCATAATCAAGTATTCACATAGT--AGACGTGACCCAGACAAGAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829353 74 +   1495729 ---GCTATGGAAGCCACCAGGGCCCCAGACCTCCATAATCAAGTATTCACATAGT--AGACGTGACCCAGACAAGAGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52459 74 -    811324 ---GCTATGGAAGCCACCAGAGCCCCAGACCTCCATAGTCAAGTATTCGCATAGT--AGACGTGACCCAGACAAGAGGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30083011 74 -  71996105 ---GCTATGGAAGCCACCAGAGCCCCAGACCTCCATAGTCAAGTATTCACATAGT--AGACGTGACCCAGACAAGAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89800 74 +    779361 ---GCTATGGAAGCCACCAGAGCCCCAGACCTCCATAGTCAAGTATTCGCATAGT--AGACGTGACCCAGACAAGAGGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     753201 74 -   1829203 ---GCTATGGAAGCCACCAGAGCCCCAGACCTCCATAGTCAAGTATTCACGTAGT--AGACATGACCCAGACAAGAGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30913239 75 + 171630274 ---GCTATGGAAGCTGCCAGAGCCCCAGACCTCCAAGATCAAGCGTTCACATAATAGAGACATGACCCAGAC-AGAGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            84612 76 -    750284 ---GCTATGGAAGCTGCCAAAGCCCCAGACCTCCAAGATCAAGCGTTCACATAATAGAGACGTGACCCAGACAAGAGGG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1332614 76 -   1771730 ---GCTATGGAAGGTGCCAGAGCCCCAGACCTCCAAGATCAAGTGTTCACATAATAGAGACGTGACCCAGACAAGAGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      32367 76 -    566255 ---GCTATGGAAGCTGCCAGAGCCCCAGACCTCCAAGATCAAGTGTTCACATAATAGAGACGTGACCCAGACAAGAGGG
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               648543 74 + 123392446 ---GCAATGGGAGCTGCCAGAGCCCTAGACCTCCATGACCAAGTATCCACATAGT--GGACGTGACCCAGACAAAAGGG
i micMur3.chr6             C 0 I 9
s proCoq1.NW_012149775v1     679897 74 -   1411461 ---GCCGTGGGAGCTGCCAGAGCCCCAGACCTCCACCGCCAAGTATCCACATAGT--GGACGTGACCCAGACAAAAGGG
i proCoq1.NW_012149775v1   C 0 I 16
s otoGar3.GL873550           696811 73 +  18854210 ---GCAGTGGGAGCTGCCAGAGCCCT-GACCACCATGGTCAAGTATCCACATTGT--GGACATGATTCAGACAAGATGG
i otoGar3.GL873550         C 0 I 1
s canFam3.chr12              373098 77 +  72498081 GATGCAACAGGAACTGCCAGGGCCCCAGACCTCTATGGTCAAGTATCCCCATAGT--AGATGTGACCCAGGCCAAGGGG
i canFam3.chr12            C 0 I 17
e mm10.chr17               58994477 2744 -  94987271 I

a score=29461.000000
s hg38.chr6_GL000254v2_alt  1888032  4 +   4827813 T----------GCG
s panTro5.chr6             30733694  4 + 175400573 T----------GCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31157347  4 + 173848474 T----------ACG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     664325  4 +   2037526 T----------GCG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75332678 14 + 122973662 TGCAAGGACAAGCG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31244106 14 + 172585720 TGCGAGGACAAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30533098 14 - 170955103 TGCGAGGACAAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829427 14 +   1495729 TGCGAGGACAAGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52533 14 -    811324 TGCGAGGACAAGGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30083085 14 -  71996105 TGCGAGGACAAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89874 14 +    779361 TGCGAGGACAAGGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     753275 14 -   1829203 TGCGAAGACAAGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30913314 14 + 171630274 TGTGAGGACAAGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            84688 14 -    750284 TGTGAAGACAAGGG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1332690  9 -   1771730 TGTGAG-----GGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      32443 14 -    566255 TGTGAGGACAAGGG
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               648626  4 + 123392446 ----------TGGG
i micMur3.chr6             I 9 I 2
s otoGar3.GL873550           696885  4 +  18854210 ----------TGTG
i otoGar3.GL873550         I 1 I 9
s canFam3.chr12              373192  4 +  72498081 ----------TGGA
i canFam3.chr12            I 17 C 0
e mm10.chr17               58994477 2744 -  94987271 I
e proCoq1.NW_012149775v1     679971 16 -   1411461 I

a score=678858.000000
s hg38.chr6_GL000254v2_alt  1888036 47 +   4827813 TATTTCAGCGTGGAGGGGAGACTGGGCCCTTGGTTTCCTGTGTCTTT-
s panTro5.chr6             30733698 47 + 175400573 TATTTCAGCGTGGAGGGGAGACTGGGCCCTTGGTTTCCTGTGTCTTT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31157351 47 + 173848474 TATTTCAGCGTGGAGGGGAGACTGGGCCCTTGGTTTCCTGTGTCTTT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     664329 47 +   2037526 TATTTCAGCGTGGAGGGGAGACTGGGCCCTTGGTTTCCTGTGTCTTT-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75332692 47 + 122973662 TATTTCAGCGTGGAAGGGAGACTGGGCCCTTGGTTTCCTGTGTCTTT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31244120 47 + 172585720 TATTTCAGCGTGGAGGGGAGACTGGGCCCTTGGTTTCCTGTGTCTTT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30533112 47 - 170955103 TATTTCAGCGTGGAGGGGAGACTGGGCCCTTGGTTTCCTGTGTCTTT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829441 47 +   1495729 TATTTCAGCGTGGAGGGGAGACTGGGCCCTTGGTTTCCCGTGTCTTT-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52547 47 -    811324 TATTTCAGCATGGAGGGGAGACTGGGCCCTTGGTTTCCTGTGTCTTT-
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30083099 47 -  71996105 TATTTCAGCGTGGAGGGGAGACTGGGCCCTTGGTTTCCTGTGTCTTT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89888 47 +    779361 TATTTCAGCATGGAGGGGAGACTGGGCCCTTGGTTTCCTGTGTCTTT-
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     753289 47 -   1829203 TATTTCAGCGTGGAGTGGAGACTGGGCCCTTGGTTTCCTGTGTCTTT-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30913328 44 + 171630274 -ATTTCAGCGTG--AAGGAGACTGGGCCCTTGGTTTCCTGTGTCTTT-
i calJac3.chr4             C 0 I 266
s saiBol1.JH378327            84702 43 -    750284 TATTTCAGAATG----GGAGACTGGGCCCTTGGTTTCCTGTGTCTTT-
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1332699 47 -   1771730 TATTTCAGCGTGGAAGGGAGACTGGGCCCTTGGTTTCCTGTGTCTTT-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      32457 47 -    566255 TATTTCAGCGTGGAAGGGAGACTGGGCCCTCAGTTTCCTGTGTCTTT-
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               648632 47 + 123392446 TATTTCAGCATGGAGGGGAGACTGGACCCCTGATTTCCTTTGTCCTT-
i micMur3.chr6             I 2 C 0
s proCoq1.NW_012149775v1     679987 47 -   1411461 TATTTCAGCATGGAGGGGAGACTGGACCCCTGATTTCCTTTGTCCTT-
i proCoq1.NW_012149775v1   I 16 C 0
s otoGar3.GL873550           696898 36 +  18854210 TATTTCAGCATGGAGGGCAGACTGGACCCCTGATTT------------
i otoGar3.GL873550         I 9 C 0
s canFam3.chr12              373196 44 +  72498081 TATTTCAGCATC----GGAGATTGGACCCCTGGTTTCCTTTGTCCCTT
i canFam3.chr12            C 0 C 0
e mm10.chr17               58994477 2744 -  94987271 I

a score=552744.000000
s hg38.chr6_GL000254v2_alt  1888083 42 +   4827813 GTAGTCAGTTCTAAC-CTCAGCCTCAG-----GCACTGGT----GTTGGGGC
s panTro5.chr6             30733745 42 + 175400573 GTAGTCAGTTCTAAC-CTCAGCCTCAG-----GCACTGGT----GTTGGGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31157398 42 + 173848474 GTAGTCAGTTCTAAC-CTCAGCCTCAG-----GCACTGGT----GTTGGGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     664376 42 +   2037526 GTAGTCAGTTCTAAC-CTCAGCCTCAG-----GCACTGGT----GTTGGGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75332739 42 + 122973662 GTAGTCAGTTCTAAC-CTCAGCCTCAG-----GCACTGGT----GTTGGGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31244167 41 + 172585720 GTAGTCAGTTCTAAC-CTCAGCCTCA------GCACTGGT----GTTGGGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30533159 41 - 170955103 GTAGTCAGTTCTAAC-CTCAGCCTCA------GCACTGGT----GTTGGGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829488 41 +   1495729 GTAGTCAGTTCTAAC-CTCAGCCTCA------GCACTGGT----GTTGGGAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52594 41 -    811324 GTAGTCAGTTCTAAC-CTCAGCCTCA------GCACTGGT----GTTGGGAC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30083146 41 -  71996105 GTAGTCAGTTCTAAC-CTCAGCCTCA------GCACTGGT----GTTGGGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89935 41 +    779361 GTAGTCAGTTCTAAC-CTCAGCCTCA------GCACTGGT----GTTGGGAC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     753336 41 -   1829203 GTAGTCAGTTCTAAC-CTCAGCCTCC------GCACTGGT----GTTGGGAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30913638 41 + 171630274 GCAGTTAGTTCTAA--CTCAGCCTCAG-----GCACTGGT----GTTGGGGT
i calJac3.chr4             I 266 C 0
s saiBol1.JH378327            84745 42 -    750284 GCAGTCAGTTCTAAC-CTCAGCCTCAG-----GCACTGGT----GTTGGGGC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1332746 42 -   1771730 GCAGTCAGTTCTAAC-CTCAGCCTCAG-----GCACTGGT----GTTGGGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      32504 42 -    566255 GCAGTCAGTTCTAAC-CTCAGCCTCAG-----GCACTGGT----GTTGGGGC
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               648679 42 + 123392446 TTAGTCAGTGTCAAC-CCCAGTCTCAG-----TCCCTGGT----GTTAGGAC
i micMur3.chr6             C 0 I 135
s proCoq1.NW_012149775v1     680034 42 -   1411461 TTAGTCAGTGTCAAC-CCCAGCCTCAG-----TCACTGGT----GTTGGGGC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           696934 44 +  18854210 ---GTCAGTGTCAAC-CCCAGCCTCAGTACCCTCCCAAGT----ATTAGGGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              373240 47 +  72498081 TTAGTCAGTTTCAACACCCAACCCCAG-----GCACTAGTTAGCATTGGGGT
i canFam3.chr12            C 0 C 0
e mm10.chr17               58994477 2744 -  94987271 I

a score=155933.000000
s hg38.chr6_GL000254v2_alt  1888125 13 +   4827813 CCTATTCATCCTC
s panTro5.chr6             30733787 13 + 175400573 CCTATTCATCCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31157440 13 + 173848474 CCTATTCATCCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     664418 13 +   2037526 CCTATTCATCCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75332781 13 + 122973662 CCTATTCATCCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31244208 13 + 172585720 CCTATTCATCCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30533200 13 - 170955103 CCTATTCATCCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829529 13 +   1495729 CCTATTCATCCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52635 13 -    811324 CCTATTCATCCTG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30083187 13 -  71996105 CCTATTCATCCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89976 13 +    779361 CCTATTCATCCTG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     753377 13 -   1829203 CCTATTCATCCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30913679 13 + 171630274 CCTATTCATCCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            84787 13 -    750284 CCTATTCATCCTG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1332788 13 -   1771730 CCTATTCATCCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      32546 13 -    566255 CCTATTCATCCTG
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     680076 13 -   1411461 ACTATTTATCCTT
i proCoq1.NW_012149775v1   C 0 I 95
s otoGar3.GL873550           696978 13 +  18854210 ACTAGTTTTCTTT
i otoGar3.GL873550         C 0 I 8
s canFam3.chr12              373287 13 +  72498081 ATTATCTGTTCTT
i canFam3.chr12            C 0 C 0
e micMur3.chr6               648721 135 + 123392446 I
e mm10.chr17               58994477 2744 -  94987271 I

a score=639335.000000
s hg38.chr6_GL000254v2_alt  1888138 68 +   4827813 -------ATCTGCACGTCCCT----CAGTTCTTTTCCTGTTGCTATTATCCTATAGAGTCAGCAAGTCAT-G--------------GAAGAGGT--
s panTro5.chr6             30733800 68 + 175400573 -------ATCTGCACGTCCCT----CAGTTCTTTTCCTGTTGCTATTATCCTATAGAGTCAGCAAGTCAT-G--------------GAAGAGGT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31157453 68 + 173848474 -------ATCTGCACGTCCCT----CAGTTCTTTTCCTGTTGCTATTATCCTATAGAGTCAGCAAGTCAT-G--------------GAAGAGGT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     664431 68 +   2037526 -------ACCTGCACGTCCCT----CGGTTCTTTTCCTGTTGCTATTATCCTATAGAGTCAGCAAGTCAT-G--------------GAAGAGGT--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75332794 81 + 122973662 -------ATCTGCAGGTCCCT----ATGTTCTTTTTCTGTTGCTATTATCCTATAGAGTCAGCAAGTCAC-TGAC-AGAGGCCTGCGAAGAGGT--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31244221 82 + 172585720 -------ATCTGCAGGTCCCT----CAGTTCTTTTCCTGTTGCTATTATCCTACAGAGTCAGCAAGTCACTTGAT-AGAGGCCTGGTAAGAGGT--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30533213 80 - 170955103 -------ATCTGCAGGTCCCT----CAGTTCTTTTCCTGTTGCTATTATCCT--AGAGTCAGCAAATCACTTGAT-AGAGGCCTGGTAAGAGGT--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829542 82 +   1495729 -------ATCTGCAGGTCCCT----CAGTTCTTTTCCTGTTGCTATTATCCTACAGAGTCAGCAAGTCACTTGAT-AGAGGCCTGGTAAGAGGT--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52648 81 -    811324 -------ATCTGCAGGTCCCT----CAGTTCTTTTCCTGTTGCTATTATCCTATAGAGTCAGCAAGTCAC-TGAT-AGAGACCTGGTAAGAGGT--
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30083200 81 -  71996105 -------ATCTGCAGGTCCCT----CAGTTCTTTTCCTGTTGCTATTATCCTACAGAGTCAGCAAGTCAC-TGAT-AGAGGCCTGGTAAGAGGT--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      89989 81 +    779361 -------ATCTGCAGGTCCCT----CAGTTCTTTTCCTGTTGCTATTATCCTATAGAGTCAGCAAGTCAC-TGAT-AGAGACCTGGTAAGAGGT--
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     753390 81 -   1829203 -------ATCTGCAGGTCCCT----CAGTTCTTTTCCTGTTGCTATTATCCTACAGAGTCAGCAAGTCAC-TGAT-AGAGGCCTAGTAAGAGGT--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30913692 70 + 171630274 -------ATCTGCAGGTCCCT------GTTATTTTCCTATTTCTATGAC----------CAGCAAGTCAC-TGGTAAGAGGCCTGGGAAGAGGT--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            84800 78 -    750284 -------ATCTGCAGGTCCCT----CAGTTATTTTCCTGTTGCTATTACACTATGGAGTCAGCACG-----TGAGAAGAGGCCTGGGAAGAGGT--
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1332801 82 -   1771730 -------ATCTGCAGGCCCCT----CAGTTATTTTCCTGTTGCTATTACCCTATAGAGTCAGCAAGTGAC-TGATAAGAGGCCTGGGAAGAGGT--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      32559 81 -    566255 -------ATCTGCAGGTCCCT----CAGTTATTTTCCTGTTGCTATTACCCTATAGAGTCAG-AAGTTAC-TGATAAGAGGCCTGGGAAGAGGT--
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           696999 84 +  18854210 -------ACCTGCTTATTCCAAAGATAGTTCTTTTCCTGGTATTACTTCATTATGGAGTGAGCTAGTCAT-TCAT--AAGACCTAGGAAAAGAC--
i otoGar3.GL873550         I 8 I 1
s canFam3.chr12              373300 90 +  72498081 CTCTGAAATCTGTTTCTTGCTAAGATAGTTCTTTTCC-GTTTCTCTT-TCCTAC--AGTGAGTGAGTCAC-TGAC-AGGGGCCTGAGAAGAATCAC
i canFam3.chr12            C 0 C 0
e micMur3.chr6               648721 135 + 123392446 I
e mm10.chr17               58994477 2744 -  94987271 I
e proCoq1.NW_012149775v1     680089 95 -   1411461 I

a score=307749.000000
s hg38.chr6_GL000254v2_alt  1888206 30 +   4827813 TTTACAGTCTAACCCTGTGGGGGTGTCAGG
s panTro5.chr6             30733868 30 + 175400573 TTTACAGTCTAACCCTGTGGGGGTGTCAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31157521 30 + 173848474 TTTACAGTCTAACCCTGTGGGGGTGTCAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     664499 30 +   2037526 TTTACAGTCTAACCCTGTGGGGGTGTCAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75332875 30 + 122973662 TTTACAGTCTAACCCTGTGGGGGTGTCAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31244303 30 + 172585720 TTTATAGTCTAGCCCTGTGGGGGTGTCAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30533293 30 - 170955103 TTTATAGTCTAGCCCTGTGGGGGTGTCAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829624 30 +   1495729 TTTATAGTCTAGCCCTGTGGGGGTGTCAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52729 30 -    811324 TTTACAGTCTAGCCCTGTGGGGGTGTCAGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30083281 30 -  71996105 TTTACACTCTAGCCCTGTGGGGGTGTCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      90070 30 +    779361 TTTACAGTCTAGCCCTGTGGGGGTGTCAGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     753471 28 -   1829203 TTT--AGTCTAGCCCTGTGGGGGTGTCAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30913762 29 + 171630274 TTTACAGTCTATCCCAGTGGGGATGTTG-T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            84878 29 -    750284 TTTACAGTCTAGCCCAGTGGGGATGTCA-G
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1332883 29 -   1771730 TTTATAGTCTAGTCCAGTGGGGATGTCA-G
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      32640 29 -    566255 TTTACAGTCTAGCCCAGTGGGGATGTCA-G
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     680184 29 -   1411461 TTTACAGTCTAACCCCTTGGAAATGCTAG-
i proCoq1.NW_012149775v1   I 95 C 0
s otoGar3.GL873550           697084 29 +  18854210 TTTACAGTCTAACCCCTTGGAAATGTTAG-
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12              373390 28 +  72498081 TTAACAGTGCAGCCCACCGGGGCTTTAG--
i canFam3.chr12            C 0 C 0
e micMur3.chr6               648721 135 + 123392446 I
e mm10.chr17               58994477 2744 -  94987271 I

a score=1838663.000000
s hg38.chr6_GL000254v2_alt  1888236 149 +   4827813 AGTTGCCTCCTGCCAGGTCTTCAGCATAAAAATCCCCCCTCCTCA-----------------GCTCCC------AG--TCAATTCTTCATCCCCACCCCTAGACTCTCCCAAATACCCCTGATGAAACCCCTGAGGT------GGAAAAAGATAAAGACAAGCAAAGATAAACAGCACAG-----
s panTro5.chr6             30733898 149 + 175400573 AGTTGCCTCCTGCCAGGTCTTCAGCATAAAAATCCCCCCTCCTCA-----------------GCTCCC------AG--TCAATTCTTCATCCCCACCCCTAGACTCTCCCAAATACCCCTGATGAAACCCCTGAGGT------GGAAAAAGATAAAGACAAGCAAAGATAAACAGCACAG-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31157551 149 + 173848474 AGTTGCCTCCTGCCAGGTCTTCAGCATAAAAATCCCCCCTCCTCA-----------------GCTCCC------AG--TCAATTCTTCATCCCCACCCCTAGACTCTCCCAAATACCCCTGATGAAACCCCTGAGGT------GGAAAAAGATAAAGACAAGCAAAGATAAACAGCACAG-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     664529 149 +   2037526 AGTTGCCTCCTGCCAGGTCTTCGGCATAAAAATCCCCCCTCCTCA-----------------GCTCCC------AG--TCGACTCTTCATCCCCACCCCTAGACTCTCCCAAATACCCCTGATGAAACCCCTGAGGT------GGAAAAAGATAAAGACAAGCAAAGATAAACAGCACAG-----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75332905 155 + 122973662 AGTTGCCTCCTGCCAGGTCTTCAGCATAAAAATCCCCCCTCCTCA-----------------GCTCCC------AG--TCAACTCTTCATCCCCACCCCTAGACTCTCCCAAATGCCCCTGATGAAACCCTTGAGGTGGAAAAGGAAAAAGATAAAGACAAGCGAAGATAAACGGCACAA-----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31244333 147 + 172585720 AGTCGCCTCCTGCCAGATCTTCAGCATAAAAAACCCCCCTCCTCA-----------------GCTCCC------AA--TCAACTCTTCATCCCCACCCC-AGATTCTCCCAAATG-CCCTGATGAAACCCTTGAGGT------GGAAAAAGATAAAGACAAGCAAAGATAAACAGCACAA-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30533323 147 - 170955103 AGTCGCCTCCTGCTAGATCTTCAGCATAAAAAACCCCCCTCCTCA-----------------GCTCCC------AA--TCAACTCTTCATCCCCACCCC-AGACTCTCCCAAATG-CCCTGATGAAACCCTTGAGGT------GGAAAAAGATAAAGACAAGCAAAGATAAACAGCACAA-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829654 147 +   1495729 AGTCGCCTCCTGCCAGATCTTCAGCATAAAAAACCCCCCTCCTCA-----------------GCTCCC------AA--TCAACTCTTCATCCCCACCCC-AGATTCTCCCAAATG-CCCTGATGAAACCCTTGAGGT------GGAAAAAGATAAAGACAAGCAAAGATAAACAGCACAA-----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52759 147 -    811324 AGTCGCCTCCTGCCAGGTCTTCAGCATAAAAAACCCCCCTCCTCA-----------------GCTCCC------AA--TCAACTCTTCATCCCCACCCC-AGACTCTCCCAAATG-CCCTGATGAAACCCTTGAGGT------GGAAAAAGATAAAGACAAGCAAAGATAAACAGCACAA-----
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30083311 147 -  71996105 AGTCGCCTCCTGCCAGGTCTTCAGCATAAAAAACCCCCCTCCTCA-----------------GCTCCC------AA--CCAACTCTTCATCCCCACCCC-AGACTCTCCCAAATG-CCCTGATGAAACCCTTGAGGT------GGAAAAAGATAAAGACAAGCGAAGATAAACAGCACAA-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      90100 146 +    779361 AGTCGCCTCCTGCCAGGTCTTCAGCATAAAAAA-CCCCCTCCTCA-----------------GCTCCC------AA--TCAACTCTTCATCCCCACCCC-AGACTCTCCCAAATG-CCCTGATGAAACCCTTGAAGT------GGAAAAAGATAAAGACAAGCAAAGATAAACAGCACAA-----
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     753499 143 -   1829203 AGTCGCCTCCTGCCAGGTCTTCAGCATAAACCCCCCCCCTCCTCA-----------------GCTCCC------AA--TCAACTCTTCATCCCCACCCCTAGACTCTCCCAAATGCCCCCGATGAAACCCTTGAGGT------GGAA------AAAGACAAGCGAAGATAAACAGCACAA-----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30913791 164 + 171630274 AGTTGCCTCCTGCCAAGTCTTCGGCATAAAAATCCCCGCTCCTCAGCTGCCTGTCCAGCTCAGCTCCC------AG--TTAACTATTCATCCCCACCCCTAGACCCTCTCAAATGCCCCTGATGAAACTCTTCAGGT------GGAAAAAGATATAAACAAAC--AGAGAAGCAGTGCAA-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            84907 164 -    750284 AGTTGCCTCCTGCCAAGTCTTCAGCATAAAAATCCCCCCTCCTCAGCTGCCTGTCCGGCTCGGCTCCC------AG--TTAACTCTTCATCCCCAACCCTAGACTCTCCCAAATGCCC--AATGAAACTCTTCAGGT------GGAAAAAGATAAAAGCAAGCGAAGAGAAGCAGTGCAA-----
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1332912 164 -   1771730 AGTTGCCTCCTGCCAAGTCTTCAGCATAAAAATCCCCCCTACTCAGCTGCCTGTCTAGCTCAGCTCCC------AG--TTAACTCTTCATCCCCACCCCTAGACTCTCCCAAATGCCC--GATGAAACTCTTCAGGT------GGAAAAAGATAAAAACAAGCGAAGAGAAGCAGTGCAA-----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      32669 165 -    566255 AGTTGCCTCCTGCCAAGTCTTCAGCATAAAAATCCCCCCTCCTCAGCTGCCTGTCCAGCTCAGCTCCC------AG--TTAACTCTTCATCCCCACCCCTAGACTCTCCCAAATGCCCC-GATGAAACTCTTCAGGT------GGAAAAAGATAAAAACAAGCGAAGAGAAGCAGTGCAA-----
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               648856 163 + 123392446 AGTTGCCTCCTGCCACATCTTCAGCATAAAAATCCCCCCTCCTCAGCTGCCCAAGTG-----GCTCTT------GGTCTCAATTCTTCATCCCTAATCCCAGACTCTCCCAAATGCCCCCGGTGAAGCTCATGAGAT------AGCAAAAGATAAACACAAGTGAAAAGAAGCAGTGCAG-----
i micMur3.chr6             I 135 I 2
s proCoq1.NW_012149775v1     680213 163 -   1411461 AGTTGCCTCCTGCCAGATCTTCAGCATAAAAATCCTCCCTCCTCAGCTGCCCATGTG-----GCTCCT------GGTCTCAATTCTTCATCCCCACTCCCAGACTCTCCCAAATGCCCCTGGTGAAGCTCATGAGAT------AGCAAAAGATAAAGACAAGCGAAAAGAAGCAGCACAG-----
i proCoq1.NW_012149775v1   C 0 I 10
s otoGar3.GL873550           697113 161 +  18854210 CGTTGCTTTCTGCCACATCTTCAGCACAAAAAACTCCCTTCCTCAGCTGCCCATCCA-----GCTCCT------GGTTTCAATTCTTCGTTCCTACTCCC--ACTTTCGCAAATGCCCCTGGCTAAAGTCACAAGAT------AGCAAAAGATAAAGATGAGTGGAAAGCAGTATCACAG-----
i otoGar3.GL873550         C 0 I 5
s canFam3.chr12              373418 152 +  72498081 AGTTACTTCCTTCTAGGTATTCAGCATAAACATCTCCCCTCTTCA-----------------GCTTCCCTTCCAGG--TCTCCTTTTCAGCCCCACAAACAGACTCCC---AATAGCCCTGGTGAAACTCATGGCAC------AGCCAAAGATA-----AAGCGCAGAGAGGCAGCACTGCAGAG
i canFam3.chr12            C 0 C 0
e mm10.chr17               58994477 2744 -  94987271 I

a score=43814.000000
s hg38.chr6_GL000254v2_alt  1888385 5 +   4827813 GAAGC
s panTro5.chr6             30734047 5 + 175400573 GAAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31157700 5 + 173848474 GAAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     664678 5 +   2037526 GAAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75333060 5 + 122973662 GAAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31244480 5 + 172585720 GCAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30533470 5 - 170955103 GCAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829801 5 +   1495729 GCAGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52906 5 -    811324 GCAGC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30083458 5 -  71996105 GCAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      90246 5 +    779361 GCAGC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     753642 5 -   1829203 GCAGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30913955 5 + 171630274 GAAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            85071 5 -    750284 GAAAC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1333076 5 -   1771730 GAAAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      32834 5 -    566255 GAAAC
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               649021 5 + 123392446 GTGGC
i micMur3.chr6             I 2 C 0
s otoGar3.GL873550           697279 5 +  18854210 ATGGT
i otoGar3.GL873550         I 5 C 0
s canFam3.chr12              373570 5 +  72498081 GAGGC
i canFam3.chr12            C 0 C 0
e mm10.chr17               58994477 2744 -  94987271 I
e proCoq1.NW_012149775v1     680376 10 -   1411461 I

a score=2183001.000000
s hg38.chr6_GL000254v2_alt  1888390 166 +   4827813 --AGAGGTACAAATAGAATTCTGATTTTTCTCCTTTCTCTCCATATTTTGAGGAAATGAATCCAATGTCCTCACCCCACCTCCTGCAGCGGAGAAGTCCCCTGAGCATCTCTGAACATCATGAACCCTCAAAGTAAGCTTAGCTTGGGCCCCTTTTCCTTT----------TCTATCA
s panTro5.chr6             30734052 166 + 175400573 --AGAGGTACAAATAGAATTCTGATTTTTCTCCTTTCTCTCCACATTTTGAGGAAATGAATCCAATGTCCTCACCCCACCTCCTGCAGCGGAGAAGTCCCCTGAGCATCTCTGAACATCATGAACCCTCAAAGTAAGCTTAGCTTGGGCCCCTTTTCCTTT----------TCTATCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31157705 166 + 173848474 --AGAGGTACAAATAGAATTCTGATTTTTCTCCTTTCTCTCCACATTTTGAGGAAATGAATCCAATGTCCTCACCCCACCTCCTGCAGCGGAGAAGTCCCCTGAGCATCTCTGAACATCATGAACCCTCAAAGTAAGCTTAGCTTGGGCCCCTTTTCCTTT----------TCTATCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     664683 166 +   2037526 --AGAGGTACAAATAGAATTCTGATTTTTCTCCTTTCTCTCCACATTTTGAGGAAATGAATCCAATGTCCTCACCCCACCTCCTGCAGCGGAGAAGTCCCCTGAGCATCTCTGAACATCATGAACCCTCAAAGTAAGCTTAGCTTGGGCCCCTTTTCCTTT----------TCTATCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75333065 166 + 122973662 --AGAGGTACAAATAGAATTCTGATTTTTCTCCTTTCTCTCCACATTTTGAGGAAATGAATCCAATGTCCTCACCCCACCTCCTGCAGCGGAGAAGTCCCCTGAGCATCTCTGAATATCATGAACCCTCAAAGTAAGCTTACCTTGGGCCCCTTTTCCTTT----------TCTATCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31244485 163 + 172585720 --AGAGGTACAAATAGAATTCTGATTTTTCTCCTTTCTCTCCACATTTTGAGGAAATGAATCCAATGTCCTCACCAGAGGACA---AGCAAAGAAGTCCCCTGAGCATCTCTGAACATTATGAACCCTCAAAGTAAGCTTAGCTTGGGCCCCTTTCCCTTT----------TCTATCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30533475 163 - 170955103 --AGAGGTACAAATAGAATTCTGATTTTTCTCCTTTCTCTCCACATTTTGAGGAAATGAATCCAATGTCCTCACCAGAGGACA---AGCAAAGAAGTCCCCTGAGCATCTCTGAACATTATGAACCCTCAAAGTAAGCTTAGCTTGGGCCCCTTTCCCTTT----------TCTATCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829806 163 +   1495729 --AGAGGTACAAATAGAATTCTGATTTTTCTCCTTTCTCTCCACATTTTGAGGAAATGAATCCAATGTCCTCACCAGAGGACA---AGCAAAGAAGTCCCCTGAGCATCTCTGAACATTATGAACCCTCAAAGTAAGCTTAGCTTGGGCCCCTTTCCCTTT----------TCTATCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      52911 163 -    811324 --AGAGGTACAAATAGAATTCTGATTTTTCTCCTTTCTCTCCACATTTTGAGGAAATGAATCCAATGTCCTCACCAGAGTACA---AGCAGAGAAGTCCCCTGAGCATCTCTGAACATTATGAACCCTCAAAGTAAGCTTAGCTTGGGCCCCTTTCCCTTT----------TCTATCA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30083463 161 -  71996105 --AGAGGTACAAATAGAATTCTGATTTTTCTCCTTTCTCTCCACATTTTGAGGAAATGAATCCAATGTCCTCACCAGAGGACA---AGCAGAGAAGTCCCCTGAGCATCTCTGAACATCATGAACCCTCAAAGTAAGCTTAGCTTGGG--CCTTTTCCTTT----------TCTATCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      90251 163 +    779361 --AGAGGTACAAATAGAATTCTGATTTTTCTCCTTTCTCTCCACATTTTGAGGAAATGAATCCAATGTCCTCACCAGAGGACA---AGCAGAGAAGTCCCCTGAGCATCTCTGAACATTATGAACCCTCAAAGTAAGCTTAGCTTGGGCCCCTTTCCCTTT----------TCTATCA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     753647 162 -   1829203 --AGAGGTACAAATAGAAT--TGATTTTTCTCCTTTCTCTCCACATTTTGAGGAAATGAATCCAATGTCCTTACCAGAGGACAG--AGCAGAGAAGTCCCCTGAGCATCTCTGAACATCATGAATCCTCAAAGTAAGCTTAGCTTGGGCCCCTTTTCCTTT----------TCTATCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30913960 166 + 171630274 --AGAGGTGCAAACAGAATTCTGATTTTTCTCCTTTCTCTCCACATTCTAAGGAAATGAATCCAATGTTCTCCCCCCACCTCCTGCAGCAGAGAAGTCCCCTGAGCATCTGTGAACATCACGAACCCTCAAAGTAAGCTTAGCTTGGGCCCCTTTTCCTTT----------TCCATCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            85076 166 -    750284 --AGAGGTCCAAACAGAATTCTGATTTTTCTCCTTTCTCTCCACATTTTAAGGAAATGATTCCAATGTTCTCCCCCCACCTCCTGCAGCAGAGAAGTCCCCTGAGCATCTGTGGACATCATGAACCCTCAAAGTAAGCTTAACTTGGGCCCCTTTTCCTTT----------TCTATCA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1333081 166 -   1771730 --AGAGGTACAAACAGAATTCTGACTTTTCTCCTTTCTCTCCACATTTTAAGGAAATGAATCCAATGTTCTCCCCCCACCTCCTGCAGAAGAGAAGTCCCCTGAGCATCTGTGAACATCATGAGCCCTCAAAGTAAGCTTAGCTTGGGCCCCTTTTCCTTT----------TCTATCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      32839 166 -    566255 --AGAGGTACAAACAGAATTCTGATTTTTCTCCTTTCTCTCCACATTTTAAGGAAATGAATCCAATGTTCTCCCCCCACCTCCTGCAGCAGAGAAGTCCCCTGAGCATCTGTGAACATCATGAACCCTCAAAGTAAGCTTAGCCTGGGCCCCTTTTCCTTT----------TCTATCA
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               649026 164 + 123392446 --AGAGGCACAAATAGAATTCTGATTTTTCTCCCATCTCTCCACCTTCTGAGGAAATGAATCCATCGTCCCCACCCCACCTCCAGCAGCAGAGAAGTCCCT-----------GAACATCATGAACCCTCCAAGGAAGCTGAGCTGGGGCCCCCTTTTCTCCATTAGAAGA-CCCAACG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     680386 174 -   1411461 --AGAGGCACAGACAGAATTCTGATTTTTCTCCCATCTCTACACCTTCTGAGGAAATGAATCCAATGTCCCCACCCCACCTCCAGCAGCAGAGAAGTCCCT-GAGCATCTCCGAACATCATGAACCCTCAAAGGAAGCTGAGCTGGGGCCCCCTTTTCTCCGTTAGAAGA-CCCATTG
i proCoq1.NW_012149775v1   I 10 C 0
s otoGar3.GL873550           697284 172 +  18854210 --AGAGGCACAAATAGAACTCTGATGTTTCTCCTATCTCTCCACCTTCCAAGGAAATTAATCCAATGTCCTTACCCCACCTCCAGCAGCAGACAAGGCCCT-GAGCATCTCTGAACATCATAAACCCTCCA---AAGCTGAGCTGGGACCACCTTTCCACCATTGGAAGACCCCCTCA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              373575 152 +  72498081 AGGGAGGGACAGGTACAATTCTCAT-CACCTCCCGTCCCTCCACTGTCTGAGAACAC---TCCAATGTTCCTACTCCAGC------AGCATATAAATCCTCT--GCTTCTCTAAACATCATGAACCCTCAGAGGAAGCTGAGCCTGAGCCCCTTTC----T----------TCCATCA
i canFam3.chr12            C 0 C 0
e mm10.chr17               58994477 2744 -  94987271 I

a score=4122162.000000
s hg38.chr6_GL000254v2_alt  1888556 299 +   4827813 ------------GTGAGGCCAAAGAGCCCCAGATGGGAGACAGGTGGATTTTTCTCTCAGCTGGGACCTTTTCTCTTTCTTGTCTAGCACATTTTGGG----AAACCTTCAAGTACATTCTCATGCTGGTATTATTTAAACTTTGCACTGGAGTG--AATTCCAGGA---GTTATGTCCACACTGAGACCAATGGAG---A-TGAACC-TAAAGCAATATG------------TGG-CCAAACACCTTAGCCT--------------------------------------CTT-TAAATATAC----TTTCCTTTGCTCCTTGGTTAACAGGGTCTGTCTGCTCGCATTAGAGAAACTGCCCAGTGACTCAGATCCTGAA
s panTro5.chr6             30734218 292 + 175400573 ------------GTGAGGCCAAAAAGCCCCAGATGGGAGGCAGGTGGATTTTTCTCTCAGCTGGGACCTTTTCTCTT----GTCTAGCACATTTTGGG----AAACCTTCAAGTACATTCTCATGCTGGTATT---TAAACTTTGCACTGGAGTG--AATTCCAGGG---GTTATGTCCACACTGAGACCAATGGAG---A-TGAACC-TAAAGGAATATG------------TGG-CCAAACACCTTAGCCT--------------------------------------CTT-TAAATATAC----TTTCCTTTGCTCCTTGGTTAACAGGGTCTGTCTGCTCGCATTAGAGAAACTGCCCAGTGACTCAGATCCTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31157871 292 + 173848474 ------------GTGAGGCCAAAGAGCCCCAGATGGGAGGCAGGTGGATTTTTCTCTCAGCTGGGACCTTTTCTCTT----GTCTAGCACATTTTGGG----AAACCTTCAAGTACATTCTCATGCTGGTATT---TAAACTTTGCACTGGAGTG--AATTCCAGGG---GTTATGTCCACACTGAGACCAATGGAG---A-TGAACC-TAAAGGAATATG------------TGG-CCAAACACCTTAGCCT--------------------------------------CTT-TAAATATAC----TTTCCTTTGCTCCTTGGTTAACAGGGTCTGTCTGCTCGCATTAGAGAAACTGCCCAGTGACTCAGATCCTGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     664849 295 +   2037526 ------------GTGAGGCCAAAGAGCCCCAGATGGGAGACAGGTGGATTTTTCTCTCAGCTGGGACCTTTTCTCTT----GTCTAGCACATTTTGGG----AAACCTTCAAGTACATTCTCATGCTGGTATTATTTAAACTTTGCACTGGAGTG--AATTCCAGGG---GTTATGTCCACACTGAGACCAATGGAG---A-TGAACC-TAAAGGAATATG------------TGG-CCAAACACCTTAGCCT--------------------------------------CTT-TAAATATAC----TTTCCTTTGCTCCTTGGTTAACAGGGTCTGTCTGCTCGCATTAGAGAAACTGCCCAGTGACTCAGATCCTGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75333231 295 + 122973662 ------------GTGAGGCTAAAGAGCCCCAGATGGGAGACAGGTGGATTTTTCTCTCAGCTGGGACCTTTTCTCTT----GTCTAGCACATTTTGAG----AAACCTTCAAGTACATTCTCATGCTGGTAGTATTTAAACTTTGCACTGGAGTG--AATTCCAGGG---GTTATGTCCACACTGAGACCAATGGAG---A-TGAACC-TAAAGGAATATG------------TGG-CCAAACACCTCAGCCT--------------------------------------CTT-TAAATATAC----TTTCCTTTGCTTCTTAGTTAACAGGGTCTGTCTGCTCGCATTAGAGAAACTGCCCAGTGACTCAGATCCCGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31244648 295 + 172585720 ------------GTGAGGCTATAGAGCCCCAGATGGGAGACAGGTGGATTTTTCTCTCAGCTGGGACCTTTTCTCTT----GTCTAGCACATTTTGGG----AAACCTTCAAGTACATTATCATGCTGGTAGTATTTAAACTTTGCACTGGAGTG--AATTCCAGGG---GTTATGTCCTCACTGAGACCAATGGAG---A-TGAACA-TAAAGGAATATG------------TGG-CCAAACACCTCAGCCT--------------------------------------CTT-TAAATATTC----TTTCCTTTGCTCCTTGGTTAACAGGGTCTGTCTGCTCACATTGGAGAAACTGCCCAGTGACTCAGATCCTGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30533638 295 - 170955103 ------------GTGAGGCTATAGAGCCCCAGATGGGAGACAGGTGGATTTTTCTCTCAGCTGGGACCTTTTCTCTT----GTCTAGCACATTTTGGG----AAACCTTCAAGTACATTATCATGCTGGTAGTATTTAAACTTTGCACTGGAGTG--AATTCCAGGG---GTTATGTCCTCACTGAGACCAATGGAG---A-TGAACA-TAAAGGAATATG------------TGG-CCAAACACCTCAGCCT--------------------------------------CTT-TAAATATAC----TTTCCTTTGCTCCTTGGTTAACAGGGTCTGTCTGCTCACATTGGAGAAACTGCCCAGTGACTCAGATCCTGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     829969 295 +   1495729 ------------GTGAGGCTATAGAGCCCCAGATGGGAGACAGGTGGATTTTTCTCTCAGCTGGGACCTTTTCTCTT----GTCTAGCACATTTTGGG----AAACCTTCAAGTACATTATCATGCTGGTAGTATTTAAACTTTGCACTGGAGTG--AATTCCAGGG---GTTATGTCCTCACTGAGACCAATGGAG---A-TGAACA-TAAAGGAATATG------------TGG-CCAAACACCTCAGCCT--------------------------------------CTT-TAAATATTC----TTTCCTTTGCTCCTTGGTTAACAGGGTCTGTCTGCTCACATTGGAGAAACTGCCCAGTGACTCAGATCCTGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      53074 294 -    811324 ------------GTGAGGCTAGAGAGCCCCAGATGGGAGACAGGTGGATTTTTCTCTCAGCTGGGACCTTTTCTCTT----GTCTAGCACATTTTGGG----AAACCTTCAAGTACA-TATCATGCTGGTAGTATTTAAACTTTGCACTGGAGTG--AATTCCAGGG---GTTATGTCCTCACTGAGACCAATGGAG---A-TGAACA-TAAAGGAATATG------------TGG-CCAAACACCTCAGCCT--------------------------------------CTT-TAAATATAC----TTTCCTTTGCTCCTTGGTTAACAGGGTCTGTCTGCTCACATTGGAGAAACTGCCCAGTGACTCAGATCCTGAA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30083624 294 -  71996105 ------------GTGAGGCTATAGAGCCCCAGATGGGAGACAGGTGGATTTTTCTCTCAGCTGGGACCTTTTCTCTT----GTCTAGCACATTTTGGG----AAACCTTCAAGTACA-TATCATGCTGGTAGTATTTAAACTTTGCACTGGAGTG--AATTCCAGGG---GTTATGTCCTCACTGAGACCAATGGAG---A-TGAACA-TAAAGGAATATG------------TGG-CCAAAAACCTCAGCCT--------------------------------------CTT-TAAATATAC----TTTCCTTTGCTCCTTGGTTAACAGGGTCTGTCTGCTCACATTGGAGAAACTGCCCAGTGACTCAGATCCTGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      90414 294 +    779361 ------------GTGAGGCTAGAGAGCCCCAGATGGGAGACAGGTGGATTTTTCTCTCAGCTGGGACCTTTTCTCTT----GTCTAGCACATTTTGGG----AAACCTTCAAGTACA-TATCATGCTGGTAGTATTTAAACTTTGCACTGGAGTG--AATTCCAGGG---GTTATGTCCTCACTGAGACCAATGGAG---A-TGAACA-TAAAGAAATATG------------TGG-CCAAACACCTCAGCCT--------------------------------------CTT-TAAATATAC----TTTCCTTTGCTCCTTGGTTAACAGGGTCTGTCTGCTCACATTGGAGAAACTGCCCAGTGACTCAGATCCTGAA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     753809 294 -   1829203 ------------GTGAGGGTAAAGAGCCCCAGATGGGAGACAGGTGGATTTTTCTCTCAGCTGGGACCTTTTCTCTT----GTCTAGCACATTTTGGG----AAACCTCCAAGTACG-TATCATGCTGGTAGTATTTAAACTTTGCACTGGAGTG--AATTCCAGGG---GTTATGTCCTCACTGAGACCAATGGAG---A-TGAACA-TAAAGGAATATG------------TGG-CCAAACACCTCGGCCT--------------------------------------CTT-TAAATATAC----TTTCCTTTGCTCCCTGGTTAACAGGGTCTGTCTGCTCACATTGGAGAAACTGCCCAGTGACTCAGATCCTGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30914126 315 + 171630274 ------------GTGAGGCTAAAGAGCCCCAGATGGAAGACAGGTGGATTTTCCTCTCAGCTGGGACCTCTTCTCTT----TTCTAGCACATTTTGGG----AAACCTTCAA--ACATTCACATGCTGGTAGTATTTCAACTTTGCACTAGAGTG--AATTCCAGCG---GTTATGTCCTCACTGGAACCAACGGAG---A-TAAACC-TAAAGGAATATA------------TGG-GCAAACACCTCAGCCTC----------------TTTTTTTCTTTTTCGAAGCTTCTT-TAAACATAC----TTTCCTTTGCTCCTTGGTTAAGAGGACCTCTCTGCCCACGTTAGAGAAACTGCCCAGTGACTCTGATCCTGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            85242 312 -    750284 ------------GTGAGGCTAAAGAGCCCCAGAAGGAAGACAGGTGGATTTTCCTCTCAGCTGGGACCACTTCTCTT----TTCTATCACATTTTGGG----AAACCTTCAA--ACATTCACATGCTGCTAGTATTTAAACTTTGCACTGGAGTG--AATTCCAGGG---GTTATGTCCTCACTGGAACCAACGGAG---A-TAAGCC-TAAAGGAATATA------------TGG-GCAAACACCTCAGCCT-----------------TTTTTTTCTTTTTCGAAGCTTCTT-TAAACATAC----TTTCCTTTGCTCCTTGGTTAACAGGAC--CTCTGCCCGCGTTAGAGAAACTGCCCAGTGACTCCGATCCTGAA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1333247 330 -   1771730 ------------GTGAGGCTAAAGAGCCCCAGAAGGAAGACAGGTGGATTTTCCTCTCAGCTGGGACCTCTTCTCTC----TTCTAGCACATTTTGGG----AAACCTTCAA--ACATTCACATGCTGCTAGTATTTAAACTTTGCACTGGAGTG--AATTCCAGGG---CTTATGTCCTCACCAGAACCAAAGGAG---A-TAAGCC-TAAAGGAATATA------------TGG-GCAAACACCTCAGCCTCtttttttttttttttttttttttttttttCGAAGCTTCTT-TAAACACAC----TTTCCTTTGCTCCTTGGTTAACAGGACCTCTCTGCCCGCGTTAGAG-AACTGCCCAGTGACTCCGATCCTGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      33005 317 -    566255 ------------GTGAGGCTAAAGAGCCCCAGATGGAAGACAGGTGGATTTTCCTCTCAGCTGGGACCTCTTCTCTT----TTCTAGCACATTTTGGG----AAACCTTCAA--ACATTCACATGGTGGTAGTATTTAAACTTTGCACTGGAGTG--AATTCCAGGG---GTTATGTCCTCACTGGAACCAATGGAG---A-TAAGCC-TAAAGGAATATA------------TGG-GCAAACACCTCAGCCTTTT--------------TTTTCTTCTTTTTCGAAGCTTCTT-TAAACATAC----TTTCCTTTGCTCCTTGGTTAACAGGACCTCTCTGCCCACATTAGAGAAACTGTCCAGTGACTCCGATCCTGAA
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               649190 301 + 123392446 ------------GTGAGGCTAAAGAGCCCCAGATGGGAGACAGGTAGGTCTTTCCCTCAACTGGGACATTTTCTCTT----TTCCAGAACATCTTAGG----CAACCTTCAAGCACATTCACATACTGGTAGTATCTAAACCTTGCACTGGAGTGAAAATTCCAGGA---CTTACATTCTCACTGGGACCAATGGAGAGCA-TGAGCT-TGAAGGCCTATG------------TGGCCCAAACACCTCAGCCT--------------------------------------CTTCTAAATATAG----TTGCCTTTGCTTCTTGGTTAACAGGGTCTCTCTGCTGGCATTAGAGAAATT-CCCAGTGACTTGGAACCTGAA
i micMur3.chr6             C 0 I 28
s proCoq1.NW_012149775v1     680560 299 -   1411461 ------------GTGAGGCTAAAGAGCCCCAGATGGGAGACAGCTAGATCCTTCCCTCAACTGAGACATTTTCTCTT----TTCCAGAACATCTTAGG----CAACCTTCAAGCACATTCACATGCTGGTAGTATTTAAACCTTGCCCTGGAGTGAAAATTCCAGGA---CTCACGTTCTCACTGGGACCAACGGAGAGGA-TGAGCT-TGAAGGACTATG------------TGGCCCAAACACCTCAGCCT--------------------------------------CTTCTAAATATAG----TTGCCTTTGCTCCTTGGTTAACAGGG--TCTCTGCTGGCATTAGAGAAATT-CCCAGTGACTCAGAACCTGAA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           697456 300 +  18854210 ------------GTGAAGCTAAAGAACCCCAGGTGGGAGATAGGTAGATCTTTCCCTCAATTAGAACTTTTTCTCTT----TCCCAGAACATTTTGGG----CAACCTTTAAGCATGTTCACATGCGGATGATATTTAAACTTTGTCTTAGAGCAAAAATTCCAGAA---CCTATGTCCTCACAGGGACCAATGGAGAGGA-TGAGCT-TGAAGGAATATG------------TGGCCCAAACACCTCTGCCT--------------------------------------CGTCTAAGTATAG----TTTCCTTTGCTCCTTGGTTAACAGGG--TCTCTGCTGGTATTAGAGGAACTGCCCAGTGACTCAGAACCTGAA
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               58997221 288 -  94987271 ------------GTGAGGCCAAAGAGCCCTAGATTAGAGAC---TGGATTTT--TCTTAGTTGCGCCTTTTCCTCCT----TTCTA--ACATTCTGGGTACATAACCTTCATGCACGGTCACAT---GGTGTGGTTCTAACTCCGTATGGCAGTGCAGGTTACAGGACTCATCATGTCCTTCTTGGAGCCATTGAAGGGAG-TGAACATTTTAGGAATTCA------------TGG-CCGGGGGCCTCAGCCT--------------------------------------CTT-CTCGAGTTC----CTTTCT------CTCGGTTGGCAGA---TTGGCGCTGGCACTGGAGAACATG-CTACTGACCCAGGCCCTGAA
i mm10.chr17               I 2744 C 0
s canFam3.chr12              373727 323 +  72498081 GAAGAGTCAGCCTTGAGGCTAAAGAGCCCAAGATGGGAGACAGGTGGGTTTTTCTCT-AACTGGGACTTTTT-TCTT----TTACCACACATTTTGAG----CAACCTTCAAGCACATTCACATGCTGACAGTATTTCATCTTTGTACTGCAATGGAAATTCCAGCA---CTTAGGTGCTGACTGGAACCAATAAAG---AGTGAGTT-TGGGGGACTGTGATCAGGCTTCAAAAG-CCAAACATGTCAGCCT--------------------------------------CTCCTAAATATACTTTATTTCCTTCACTCCTGGATTGACCAGG--TTTCTACTGGAATTTGGAAAACTGCCCAATGACCCAGATCCTGCA
i canFam3.chr12            C 0 C 0

a score=51772.000000
s hg38.chr6_GL000254v2_alt  1888855 4 +   4827813 AGGA
s panTro5.chr6             30734510 4 + 175400573 AGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31158163 4 + 173848474 AGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     665144 4 +   2037526 AGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75333526 4 + 122973662 AGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31244943 4 + 172585720 AGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30533933 4 - 170955103 AGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     830264 4 +   1495729 AGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      53368 4 -    811324 AGGA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30083918 4 -  71996105 AGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      90708 4 +    779361 AGGA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     754103 4 -   1829203 AGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30914441 4 + 171630274 AGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            85554 4 -    750284 AGGG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1333577 4 -   1771730 AGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      33322 4 -    566255 AGGG
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     680859 4 -   1411461 CGGG
i proCoq1.NW_012149775v1   C 0 I 71
s otoGar3.GL873550           697757 3 +  18854210 -GGG
i otoGar3.GL873550         I 1 I 72
s mm10.chr17               58997509 3 -  94987271 -GGA
i mm10.chr17               C 0 I 3
s canFam3.chr12              374050 4 +  72498081 GGGG
i canFam3.chr12            C 0 C 0
e micMur3.chr6               649491 28 + 123392446 I

a score=219700.000000
s hg38.chr6_GL000254v2_alt  1888859 22 +   4827813 TCTGCTT---TAGAGAAAA--AAGGAG
s panTro5.chr6             30734514 22 + 175400573 TCTGCTT---TAGAGAAAA--AAGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31158167 22 + 173848474 TCTGCTT---TAGAGAAAA--AAGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     665148 22 +   2037526 TCTGCTT---TAGAGAAAA--AAGGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75333530 22 + 122973662 TCTGCTT---TAGAGCAAA--AAGGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31244947 22 + 172585720 TCTGCTT---TAGAGCAAA--AAGGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30533937 22 - 170955103 TCTGCTT---TAGAGCAAA--AAGGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     830268 22 +   1495729 TCTGCTT---TAGAGCAAA--AAGGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      53372 22 -    811324 TCTGCTT---TAGAGCAAA--AAGGAG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30083922 22 -  71996105 TCTGCTT---TAGAGCAAA--AAGGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      90712 22 +    779361 TCTGCTT---TAGAGCAAA--AAGGAG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     754107 22 -   1829203 TCTGCTT---TAGAGCAAA--AAGGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30914445 19 + 171630274 -ATGCTT---TAGAGCAAA----GGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            85558 24 -    750284 -ATGCTTAGCTGAAGCAAA--GCGGAG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1333581 21 -   1771730 -ATGCTT---TAGAGCAAA--GAGGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      33326 21 -    566255 -ATGCTT---TAGAGCAAA--CAGGAG
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           697832 24 +  18854210 actgctT---TAGAGTAAAGCAAGGGG
i otoGar3.GL873550         I 72 I 1
s mm10.chr17               58997515 16 -  94987271 GCCTCTA---CAGAGCAAG--------
i mm10.chr17               I 3 C 0
s canFam3.chr12              374054 21 +  72498081 -AGGTTT---TAGAGTGAA--GAGAAG
i canFam3.chr12            C 0 I 3
e micMur3.chr6               649491 28 + 123392446 I
e proCoq1.NW_012149775v1     680863 71 -   1411461 I

a score=457404.000000
s hg38.chr6_GL000254v2_alt  1888881 45 +   4827813 TCTGGTACT----------TCTCACTCC---ATCTAGTGG----------GCAACCTGTCCAACTACA-
s panTro5.chr6             30734536 48 + 175400573 TCTGGTACT----------TCTCACTCCTCCATCTAGTGG----------GCAACCTGTCCAACTACA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31158189 48 + 173848474 TCTGGTACT----------TCTCACTCCTCCATCTAGTGG----------GCAACCTGTCCAACTACA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     665170 48 +   2037526 TCTGGTACT----------TCTCACTCCTCCATCTAGTGG----------GCAACCTGTCCAACTACA-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75333552 48 + 122973662 TCTGGTACT----------TCTCACTCCTCCATCTAGTGG----------GCAACCTGTCCAACTACA-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31244969 48 + 172585720 TCTAGTACT----------TTTCACTCCTCCATCTTGTGG----------TCAACCTGTCAAACTACA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30533959 48 - 170955103 TCTAGTACT----------TTTCACTCCTCCATCTTGTGG----------TCAACCTGTCAAACTACA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     830290 48 +   1495729 TCTAGTACT----------TTTCACTCCTCCATCTTGTGG----------TCAACCTGTCAAACTACA-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      53394 48 -    811324 TCTAGTACT----------TTTCACTCCTCCATCTTGTGG----------TCAACCTGTCAAACTACA-
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30083944 48 -  71996105 TCTAGTACT----------TTTCACTCCTCCATCTTGTGG----------TCAACCTGTCAAACTACA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      90734 48 +    779361 TCTAGTACT----------TTTCACTCCTCCATCTTGTGG----------TCAACCTGTCAAACTACA-
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     754129 48 -   1829203 TCTAGTACT----------TTTCACTCCTCCATCTGGTGG----------TCAACCTGTCAAACTACA-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30914464 48 + 171630274 TCTGGTACT----------TCTCACTCCTCCATCTAGTGG----------TCAAGCTATCAAACTACA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            85582 48 -    750284 TCTGATACT----------TCTCACTCCTCCATCTAGTGG----------TCAAGCTATCAAACTACG-
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1333602 48 -   1771730 TCTGATACT----------TCTCACTCCTCCATCTAGTGG----------TCAAGCTATCAAACTACG-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      33347 48 -    566255 TCTGGTACT----------TCTCACTCCTCCATCTAGTGG----------TCAAGCTATCAAACTACG-
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               649519 44 + 123392446 TCTGGTACTTCC----TCTCCTCACCCTTCCACCTAACGG----------TCAACCTG-----------
i micMur3.chr6             I 28 C 0
s otoGar3.GL873550           697857 43 +  18854210 TCTGGTACT-------ACTTCTCACTCCCCCACCTAACAA----------TCAACATGTT---------
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               58997531 12 -  94987271 ---------------------------CCACACCCTGCA------------------------------
i mm10.chr17               C 0 C 0
s canFam3.chr12              374078 69 +  72498081 TCTGGTACTCCCATCTTCTCCTTACTCCTGCACCTAAAGGCATAGGTTTCTCAGCCTGTTGGACCAATA
i canFam3.chr12            I 3 C 0
e proCoq1.NW_012149775v1     680863 71 -   1411461 I

a score=4219261.000000
s hg38.chr6_GL000254v2_alt  1888926 319 +   4827813 -CTTTTTGCTA-TCATCCAATACAGACAACAC--TGGCAGTCAAT------------AAA--AA----AGCTCATTCTCCCATTTCTA--------AAAGAATTCAATCTAGGAGTCTAGCTGCTGGCTTAACAAAGG-GATATACAGCAAAGCCTAAGGTGCCCTGACTCACGAGAGAGCTGATTTCTGCCGAAATGCTGAGGTGAAACCCTAAAATGGTTCTGGCCACCT-GCTAGGT-TCTAGCTCAGACCCTGCACTGGATCATCTTTG---TTCCACCCCCAAACCAGAGTAAATGGAATTCAGGAGGCTGGTTCTGTGCCCGCCCCTATGTACCTCAAATACTCGTAGC
s panTro5.chr6             30734584 319 + 175400573 -CTTTTTGCTA-TCATCCAATACAGACAACAC--TGGCAGTCAAT------------AAA--AA----AGCTCATTCTCCCATTTCTA--------AAAGAATTCAATCTAGGAGTCTAGCTGCTGGCTTAACAAAGG-GATATACAGCAAAGCCTAAGGTGCCCTGACTCATGAGAGAGCTGATCTCTGCCGAAATGCTGAGGTGAAACCCTAAAATGGTTCTGGCCACCT-GCTAGGT-TCTAGCTCAGACCCTGCACTGGATCATCTTTG---TTCCACCCCCAAACCAGAGTAAATGGAATTCAGGAGGCTGGTTCTGTGCCCGCCCCTATGTACCTCAAATACTCGTAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31158237 319 + 173848474 -CTTTTTGCTA-TCATCCAATACAGACAACAC--TGGCAGTCAAT------------AAA--AA----AGCTCATTCTCCCATTTCTA--------AAAGAATTCAATCTAGGAGTCTAGCTGCTGGCTTAACAAAGG-GATATACAGCAAAGCCTAAGGTGCCCTGACTCACGAGAGAGCTGATCTCTGCCGAAATGCTGAGGTGAAACCCTAAAATGGTTCTGGCCACCT-GCTAGGT-TCTAGCTCAGACCCTGCACTGGATCATCTTTG---TTCCACCCCCAAACCAGAGTAAATGGAATTCAGGAGGCTGGTTCTGTGCCCGCCCCTATGTACCTCAAATACTCGTAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     665218 318 +   2037526 -CTTTTTGCTA-TCATCCAATACAGACAACAC--TGGCAGTCAAT------------AAA--AA----AGCTCATTCTCCCATTTCTA--------AAAGAATTCAATCTAGGAGTCTAGCTGCTGGCTTAACAAAGG-GATATACAGCAAAGCCTAAGGTGCCCGGACTCACGAGAGAGCTGATCTCTGCCGAAATGCTGAGGTGAAACCCTAAAATGGTTCTGGCCACCT-GCTAGGT-TCTAGCTCAGACCCTGCACTGGATCATCTTTG---TTCCACCCCCAAACCAGAGTAAATGGAACTCAGGAGGCTGGTTCTGTGCCTGCCCCTATGTACCTCAAATACT-GTAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75333600 319 + 122973662 -CTTTGTGCTA-TCATCCAATACAGACAACAC--TGGCAGTCAAT------------AAA--AA----AGCTCCTTCTCCCATTTCTA--------AAAGAATTAAATCTAGAAGTCTAGCTGCTGGCTTAACAAAGG-GATATACAGCAAAGCCTAAGGTGCCCTGACTCATGACAGAGCTGATCTCCACTGAAATGCTGAGGTGAAAACCTAAAATGGTTCTGGCCACCT-GCTAGGT-TCTAGCTCAGACCCTGCACTGGATCATCTTTG---TTCCACCCCCAAACCAGAGTAAATGGAATTCAGGAGGCTGGTTCTGTGCCCGCCCCTATGTACCTCAAACACTCGTAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31245017 329 + 172585720 -CTTTTTGCTA-TCATCCAATATAGACAACAC--TGACAGTCAGT------------AAAACAA----AGCTCATTCTTCCATTTCGAAAAGAATTAAAGAATTAAATCTAGGAGTCTAGTTGCTGGCTTAACAAAGG-GATATACAGCAAGGCCTAAGGTGCCCTGACTCACGAGAGAGTTGATCTCTGCTGCAATGCTGAGGTGAAACCCTAAAATGATTCTGGCCACCT-GCTAGGT-TCTAGCTCTGACCCTGCACTGGGTCATCTTTG---TTCCACCTCCAAACCAGAGTAAATGGAATTCAGGAGGCTGGTTCTGTGCCCACCCCTATGTACCTCATATACTCGCAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30534007 329 - 170955103 -CTTTTTGCTA-TCATCCAATATAGACAACAC--TGGCAGTCAGT------------AAAACAA----AGCTCATTCTTCCATTTCGAAAAGAATTAAAGAATTAAATCTAGGAGTCTAGTTGCTGGCTTAACAAAGG-GATATACAGCAAGGCCTAAGGTGCCCTGACTCACGAGAGAGTTGATCTCTGCTGCAATGCTGAGGTGAAACCCTAAAATGATTCTGGCCACCT-GCTAGGT-TCTAGCTCTGACCCTGCACTGGGTCATCTTTG---TTCCACCTCCAAACCAGAGTAAATGGAATTCAGGAGGCTGGTTCTGTGCCCACCCCTATGTACCTCATATACTCGCAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     830338 329 +   1495729 -CTTTTTGCTA-TCATCCAATATAGACAACAC--TGGCAGTCAGT------------AAAACAA----AGCTCATTCTTCCATTTCGAAAAGAATTAAAGAATTAAATCTAGGAGTCTAGTTGCTGGCTTAACAAAGG-GATATACAGCAAGGCCTAAGGTGCCCTGACTCACGAGAGAGTTGATCTCTGCTGCAATGCTGAGGTGAAACCCTAAAATGATTCTGGCCACCT-GCTAGGT-TCTAGCTCTGACCCTGCACTGGGTCATCTTTG---TTCCACCTCCAAATCAGAGTAAATGGAATTCAGGAGGCTGGTTCTGTGCCCACCCCTATGTACCTCATATACTCGCAGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      53442 329 -    811324 -CTTTTTGCTA-TCATCCAATATAGACAACAC--TGGCAGTCAGT------------AAAACAA----AGCTCATTCTTCCATTTCGAAAAGAATTAAAGAATTAAATCTAGGAGTCTAGTTGCTGGCTTAACAAAGG-GATATACAGCAAGGCCTAAGGTGCCCTGACTCACGAGAGAGTTGATCTCTGCTGCAATGCGGAGGTGAAACCCTAAAATGATTCTGGCCACCT-GCTAGGT-TCTAGCTCTGACCCTGCACTGGGTCATCTTTG---TTCCACCTCCAAACCAGAGTAAATGGAATTCAGGAGGCTGGTTCTGTGCCCACCCCTATGTACCTCATATACTCGCAGC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30083992 327 -  71996105 -CTTTTTGCTA-TCATCCAATATAGACAACAC--TGGCAGTCAGT------------AAAGCAA----AGCTCATTCTTCCATTTCTAAAAGAATTAAAGAATTAAATCTAGGAGTCTAGTTGCTGGCTTAACAAAGG-GATATACAGCAAGGCCTAAGGTGCCCTGACTCAC--GAGAGTTGATCTCTGCTGCAATGCTGAGGTGAAACCCTAAAATGATTCTGGCCACCT-GCTAGGT-TCTAGCTCTGACCCTGCACTGGGTCATCTTTG---TTCCACCTCCAAACCAGAGTAAATGGAATTCAGGAGGCTGGTTCTGTGCCCACCCCTATGTACCTCATATACTCGCAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      90782 329 +    779361 -CTTTTTGCTA-TCATCCAATATAGACAACAC--TGGCAGTCAGT------------AAAACAA----AGCTCATTCTTCCATTTCGAAAAGAATTAAAGAATTAAATCTAGGAGTCTAGTTGCTGGCTTAACAAAGG-GATATACAGCAAGGCCTAAGGTGCCCTGACTCACGAGAGAGTTGATCTCTGCTGCAATGCGGAGGTGAAACCCTAAAATGATTCTGGCCACCT-GCTAGGT-TCTAGCTCTGACCCTGCACTGGGTCATCTTTG---TTCCACCTCCAAACCAGAGTAAATGGAATTCAGGAGGCTGGTTCTGTGCCCACCCCTATGTACCTCATATACTCGCAGC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     754177 321 -   1829203 -CTTTTTGCTA-TCATCCAATATAGACAACAC--TGGCAGTCAGT------------AAAACAA----AGCTCACTCTTCCATTTCTA--------AAAGAATTAAATCTAGGAGTCTAGTTGCTGGCTTAACAAAGG-GATATACAGCAAGGCCTAAGGTGCCCCGACTCACGAGAGAGTTGATCTCTGCTGCAATGCTGAGGTGAAACCCTAAAATGATTCTGGCCACCT-GCTAGGT-TCTAGCTCTGACCCCGCACTGGGTCATCTTTG---TTCCCCCTCCAAACCAGAGTAAATGGAATTCAGGAGGCTGGTTCTGTGCCCACCCCTATGTACCTCATATACTCGCAGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30914512 340 + 171630274 -CTTCTTGCTA-TCATCCAACCCAGACAACAC--TGGCAGTCAGTAAAACAAAGCCAAAAACAAAGCCAGCTCATTCTCCCATCTCTC--------AAAGAATTAAATCTAGGAGTCCACCTGCTGGCTTAGCAAAGG-AATGTACAGCAAGGCCTAAGGTGCCCTGATTCATGAGAGAACTGATCTCTGCTACAATGCTGAGATGAAATCCTAAAATGATTCTGTCCACCT-GCTAGCT-TCTAGCTCAGACCCTGCACTGGGTCATCTTTGTTCTTCTACCCCCAAATCAGAGGAAATGGAATTCAGAAGGCTGGTTCTGTACCTGCCTCTATGTACCTCATACACTCATAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            85630 327 -    750284 -ATTTTTGCTA-TCATCCAACCCAGACAACAC--TGGCAGTCAGT------------AAAACAAAGCTAGCTCGTTCTCCCATCTCTCA-------AAAGAATTAAATCTAGGAGTCAAGCTGCTGGCTTAACAAAGG-AATGTACAGCAAGGCCTAAGGTGCCCCGACGCATGAGAGAATTGATTTCTGCTACAATGCTGAGATGAAATCCTAAAATGATTCTGGCCATTGAGCTAGCT-TCTAGCGCAAACCCTGCACTGGGTCATCTTTG---TTCCACCCCCAAATCAGAGTAAATGGAATTCAGAAGGCTGGTTCTGTGACCGCCTCTATGTACCTCACATACTCATAGT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1333650 326 -   1771730 -CTTTTTGCTA-TCATCCAACCCAGACAACAC--TGGCAGTCAGT------------AAAACAAAGCTAGCTCATTCTCCCATCTCTC--------AAAGAATTAAATCTAGGAGTCAAGCTGCTGGCTTAACAAAGG-AATGTACAGCAAGGCCTAAGGTGCCCCAATTCATGAGAGAACTGATCTCTGCTACAATGCTGAGATGAAATTCTAAAATGATTCTGGCCATTGAGCTAGCT-TCTAGCTCAAACCCTGCACTGGGTCATCTTTG---TTCCACCCCCAAATCAGAGAAAATGGAATTCAGAAGGCTGGTTCTGTGCCCACCTCTATGTACCTCACATACTCATAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      33395 325 -    566255 -CCTTTTGCTA-TCATCCAACCCAGACAACAC--TGGCAGTCAGT------------AAAACAAAGCTAGCTCATTCTCCCATCTCTC--------AAAGAATTAAATCTAGGAGTCAAGCTGCTGGCTTAACAAAGG-AATGTACAGCAAGGCCTAAGGTGCCCTGACCCATGAGAGAACTGATCTCTGCTACAATGCTGAGATGAAATCCTAAAATGATTCTGGCCACCT-GCTAGCT-TCTAGCTTAGACCCTGCACTGGGTCATCTTTG---TTCCACCCCCAAATCAGAGTAAATGGAATTCAGAAGGCTGGTTCTGTGCCCACCTCTATGTACCTCATATACTCATAGT
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               649563 316 + 123392446 -CTTTTTGCTA-CCATCCAAACCAGACAATACTGTGGCAGGCAAT------------AAAACAA----AGCCTATTCTCCCTTTTCTC--------CACGAATTAAATCTACGAGTCTAGCTGCTAGTTTAACAAGGATGAAATAAAGCAAGGCCTAAGGCACCCTGACTTACAAGAGAGCTGACCTCTGCTGAGCTGCAGAGATGAAACATTAAGATGGCTCTGGCCACCT-ACTAACT-TTGAGTT---ACCCTACATTAAGTCACCTTTA---CTCCATCCTCAAACCAGAGTAAATACGATTGAGGAAGCTGGTTCTGTACACTCCCCTATGT-----ATAAACCCTAAGC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     680934 320 -   1411461 -CTTTTTGCTA-CCATCCAAACCAGACAATACTGTGGCAGGCAAT------------AAAACAA----AGCCCATTCTCCCTTTTCTC--------CATGAATTAAATCGAGGAATCTAGCTGCTGGCTTAACAAGGATGAAATAAAGCAAGGCCTAAGGCACCCTGATTCACAAGAGAGCTGATCTCCGCTGAACTGCAGAGATGAAACATTAAGATGGCTCTGGCCACCT-GCTAACT-TCGAGTT---ACCCTACACTAAGTCACCTTTG---CTCCATCCTC-AACCAGAGTAAATGGGATTGAGGAAGCTGGTTCTGTACACTCCTCTATGTATCTCATATACCCTACGC
i proCoq1.NW_012149775v1   I 71 C 0
s otoGar3.GL873550           697900 314 +  18854210 --TTTTTGCTACCCAACCAAATGAGAAAGCAC-GTAGTAGTCAAT------------AAAACAA----AGCCCATTCTCCCTTTTCTC--------TCAGAATTAAATCTAGGAGTCTAGTTGATGGCTTAATAAGGATGAAATAAAGCAATGCCTAAGGCACCGTCACTCACAC---AGTTGAGCTCT-CTGAAATACAAAGCT-AGACCCTAAGATGGCTCTGGCCACCT-GCTGAGTGCTCAG-----ATCCTACACTAAGGCATCTTTG---CTCCATCTTCAAACCAGAATAAATGGGATTCAGGAGAATAGTTCTGTGTACTCCCCTGTGTTTCTTATATACCCTTAGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58997543 216 -  94987271 -GTCTGTGCTA-CCACCCAAC-TGGACAACAC--TG--------T-----------------------GGCT--GCCTCCTTTTTCAC--------CAGGAATTCAGCCCAGGGTTCTCATTTCC---------ACTG-GATACA------------------------------GAGAACT---------------------------CCTAAAGATGGCCCCAGCCACCT-GCCAACT-TCTGGGTCAGACCTTAAACAG-----TCTGAA---CTCCACCCCCAAACCAGAGCAAATGGGCTCAAGAA--CTGGGTC--------------TGCACAGCTGGCGCTCTTTGC
i mm10.chr17               C 0 C 0
s canFam3.chr12              374147 313 +  72498081 CTTTTTTGCTA-CCATTTAACTCAGACAACACTGTGGCAGCCAAC------------AAAACAA----ATCCCATTCTCCCTTTTCTC--------CAATAATTAAGTCTAGGAGTCCAGCTGCTTGCTTAACAAAGA-AGTACATA--AAGTCTTAAGATGCCCT------CAATAGAGCTGACTGCTGCTGAAATGCACAGA--ACTCCATAAGATCGTTCTGGCTACCT-GCTGAGT-TCTAGCTCAGATCCTGCACTG-ATCATCTTTG---CTCTATCCCCAAACCAAGCTAAATGGGATTCAAAATGCTGGCTCTATGTCTTCCCCTATGAGTCCCATAGACCTTTAGT
i canFam3.chr12            C 0 I 117

a score=5423565.000000
s hg38.chr6_GL000254v2_alt  1889245 397 +   4827813 TGCCAAGCTTTT-------------------------------------------------------------------------------------------AAACAATGAAACTTAACACTGTACTTAAAGGGCTGTTCTGCTCAAATCATAAATGTGCACGCTAGTTGTTCACCAGTAA-TTAAAA--CTACTCGTACAC--ATTTAATCAA--CATTTTCACAAGCGTTTTGCCTTAACTAAAAATTTGTATCAACATGAAGTCCTAGAATTATACTGCATGAG-CCCCCAGGATTTGGAGAACA-TCATTCACCCTTCTTAATCCAAAAACTTGGGTGCCTGAAGGTGGGGTTTTGATCATGGCCAGGCTTCAAATTTAGGTCAGGCTCTGGTGgtacatccttatatgcttggtgctc---agcacaggtcaagacacacaatagaccctcaataaatatttgctgaatTTGAACAATTCCTGT-AAAAATCTCA
s panTro5.chr6             30734903 397 + 175400573 TGCCAAGCTTTT-------------------------------------------------------------------------------------------AAACAATGAAACTTAACACTGTACTTAAAGGGCTGTTCTGCTCAAATCATAAATGTGCACACTAGTTGTTCACCAGTAA-TTAAAA--CTACTCGTACAC--ATTTAATCAA--CATTTTCACAAGCGTTTTGCCTTAACTAAAAATTTGTATCAACATGAAGTCCTAGAATTATACTGCATGAG-CCCCCAGGATTTGGAGAACA-TCATTCACCCTTCTTAATCCAAAAACTTGGGTGCCTGAAGGTGGGGTTTTGATCATGGCCAGGCTTCAAATTTAGGTCAGGCTCTGGTGgtacatccttatatgcttggtgctc---agcacaggtcaagacacacaatagaccctcaataaatatttgctgaatttgaacaattCCTGT-AAAAATCTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31158556 397 + 173848474 TGCCAAGCTTTT-------------------------------------------------------------------------------------------AAACAATGAAACTTAACACTGTACTTAAAGGGCTGTTCTGCTCAAATCATAAATGTGCACACTAGTTGTTCACCAGTAA-TTAAAA--CTACTCGTACAC--ATTTAATCAA--CATTTTCACAAGCGTTCTGCCTTAACTAAAAATTTGTATCAACATGAAGTCCTAGAATTATACTGCATGAG-CCCCCAGGATTTGGAGAACA-TCATTCACCCTTCTTAATCCAAAAACTTGGGTGCCTGAAGGTGGGGTTTTGATCATGGCCAGGCTTCAAATTTAGGTCAGGCTCTGGTGgtacatccttatatgcttggtgctc---agcacaggtcaagacacacaatagaccctcaataaatatttgctgaatttgaacaattCCTGT-AAAAATCTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     665536 397 +   2037526 TGCCAAGCTTTT-------------------------------------------------------------------------------------------AAACAATGAAACTTAACACTGTACTTAAAGGGCTGTTCTGCTCAAATCATAAATGTGCACGCTAGTTGTTCACCAGTAA-TTAAAA--CTACTCGTACAC--ATTTAATCAA--CATTTTCACAAGCGTTTTGCCTTAACTAAAAATTTGTATCAACATGAAGTCCTAGAATTATACTGCATGAG-CCCCCAGGATTTGGAGAACA-TCATTCACCCTTCTTAATCCAAAAACTTGGGTGCCTGAAGGTGGGGTTTTGATCATGGCCAGGCTTCAAATTTAGGTCAGGCTCTGGTGgtacatccttatatgcttggtgctc---agcacaggtcaagacacacaatagaccctcaataaatatttgctgaatttgaacaattCCTGT-AAAAATCTCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75333919 387 + 122973662 TGCCAGGCTTTT-------------------------------------------------------------------------------------------AAATAATGAAACTTAACACT---------AGGCTGTTCTGCTCAAATCATAAATGTGCACGCTAGTTGTTTGCCAGTAA-TTAAAA--CTACTCGTACAC--A-TTAATCAA--CATTTTCACAAGCGTTTTGCCCTAACTAAAAATTTATATCAACATGAAGTCCTAGAATTATACTGCATGAG-CCCCCAGGATTTGGAGAACA-TCATTCACGCTTCTTAATCCAAAAACTTGGGTGCCTGAAGGTGGGGTTTTGATCATGGCCAGGCTTCAAATTTAGGTCAGGCTCTGGTGgtacatccttatatgcttgatgctc---agcacaggtcaagacacacaatagaccctcaataaatatttgctgaatTTGAACAATTCCTGT-AAAAATCTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31245346 374 + 172585720 TGCCAGGCTTTT-------------------------------------------------------------------------------------------AAATAATGAAACTTAACACTGTACTTAAAGGGCTGTTCTGCTCAAATCATAAATGTGCACGCTCGTTGTTCAC----AA-TTAAAACTCTACTCGTACAC--ATTAAATCGA--CATTTTCACAAGCGTTTTGCCTTAACTAAAAATTTATATCAACATGAAGACCTAGAATTATACTGCATGAG----CCAAGATTTGCAGAACA-TCATTCACCCTTCTTAATCCAAAAACTTGGGTGCCTGAAGGTGGGGTTTTGATCATGGCCAGGCTTCA------------------GTGgtacatccttatatgcttggtgctc---agcacaggtcaagacacacaacagaccctcaataaatatttgctgaatttgaacaattTCTGT-AAAAATCTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30534336 374 - 170955103 TGCCAGGCTTTT-------------------------------------------------------------------------------------------AAATAATGAAACTTAACACTGTACTTAAAGGGCTGTTCTGCTCAAATCATAAATGTGCACGCTAGTTGTTCAC----AA-TTAAAACTCTACTCGTACAC--ATTAAATCGA--CATTTTCACAAGCGTTTTGCCTTAACTAAAAATTTATATCAACATGAAGACCTAGAATTATACTGCATGAG----CCAAGATTTGCGGAACA-TCATTCACCCTTCTTAATCCAAAAACTTGGGTGCCTGAAGGTGGGGTTTTGATCATGGCCAGGCTTCA------------------GTGgtacatccttatatgcttggtgctc---agcacaggtcaagacacacaacagaccctcaataaatatttgctgaatTTGAACAATTTCTGT-AAAAATCTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     830667 374 +   1495729 TGCCAGGCTTTT-------------------------------------------------------------------------------------------AAATAATGAAACTTAACACTGTACTTAAAGGGCTGTTCTGCTCAAATCATAAATGTGCACGCTAGTTGTTCAC----AA-TTAAAACTCTACTCGTACAC--ATTAAATCGA--CATTTTCACAAGCGTTTTGCCTTAACTAAAAATTTATATCAACATGAAGACCTAGAATTATACTGCATGAG----CCAAGATTTGCAGAACA-TCATTCACCCTTCTTAATCCAAAAACTTGGGTGCCTGAAGGTGGGGTTTTGATCATGGCCAGGCTTCA------------------GTGgtacatccttatatgcttggtgctc---agcacaggtcaagacacacaacagaccctcaataaatatttgctgaatttgaacaattTCTGT-AAAAATCTCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      53771 377 -    811324 TGCCAGGCTTTT-------------------------------------------------------------------------------------------AAATAATGAAACTTAACACTGTACTTAAAGGGCTGTTCTGCTCAAATCATGAATGTGCACGCTAGTTGTTCAC----AA-TTAAAACTCTACTCGTACAC--ATTAAATCGA--CATTTTCACAAGCGTTTTGCCTTAACTAAAAATTTATATCAACATGAACACCTAGAATTATACTGCATGAG-CCCCCAAGATTTGCAGAACA-TCATTCACCCTTCTTAATCCAAAAACTTGGGTGTCTGAAGGTGGGGTTTTGATCATGGCCAGGCTTCA------------------GTGgtacatccttatatgcttggtgctc---agcacaggtcaagacacacaatagaccctcaataaatatttgctgaatttgaacaattCCTGT-AAAAATCTCA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30084319 377 -  71996105 TGCCAGGCTTTT-------------------------------------------------------------------------------------------AAATAATGAAACTTAACACTGTACTTAAAGGGCTGTTCTGCTCAAATCATAAATGTGCACGCTAGTTGTTCAC----AA-TTAAAACTCTACTCGTACAC--ATTAAATCGA--CATTTTCACAAGTATTTTGCCTTAACTAAAAATTTATATCAACATGAAGACCTAGAATTATACTGCATGAG-CCCCCAAGATTTGCAGAACA-TCATTCACCCTTCTTAATCCAAAAACTTGGGTGCCTGAAAGTGGGGTTTTGATCATGGCCAGGCTTCA------------------GTGgtacatccttatatgcttggtgctc---agcacaggtcaagacacacaatagaccctcaataaatatttgctgaatTTGAACAATTCCTGT-AAAAATCTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      91111 377 +    779361 TGCCAGGCTTTT-------------------------------------------------------------------------------------------AAATAATGAAACTTAACACTGTACTTAAAGGGCTGTTCTGCTCAAATCATAAATGTGCACGCTAGTTGTTCAC----AA-TTAAAACTCTACTCGTACAC--ATTAAATCGA--CATTTTCACAAGCGTTTTGCCTTAACTAAAAATTTATATCAACATGAACACCTAGAATTATACTGCATGAG-CCCCCAAGATTTGCAGAACA-TCATTCACCCTTCTTAATCCAAAAACTTGGGTGTCTGAAGGTGGGGTTTTGATCATGGCCAGGCTTCA------------------GTGgtacatccttatatgcttggtgctc---agcacaggtcaagacacacaatagaccctcaataaatatttgctgaatttgaacaattCCTGT-AAAAATCTCA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     754498 377 -   1829203 TACCAGGCTTTT-------------------------------------------------------------------------------------------AAATAATGAAACTTAACACTGTACTTAAAGGGCTGTTCTGCTCAAATCATAAATGTGCACGCTAGTTGTTCGC----AA-TTAAAACTCTACTCGTACAC--ATTAAATCGA--CATTTTCACAAGCGTTTTGCCTTAACTAAAAATTTATATCAACATGAAGACCTAGAATTATACTGCATGAG-CCCCCAGGATTTGCAGAACA-TCATTTACCCTTCTTAATCCAAAAACTTGGGTGCCTGAAGGTGGGGTTTTGATCATGGCCAGGCTTCA------------------GTGgtacatccttatatgcttggtgctc---agcagaggtcaagacacacaatagaccctcaataaatatttgctgaatTGGAACAATTCCTGT-AAAAATCTCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30914852 400 + 171630274 TGCCAGGCTCTT-------------------------------------------------------------------------------------------GAATAATGAAACTTAACCCTGTACTTAAAGGGCTGTTCTGATCAAATCACAAATGTGCACGCTAG-TGTTCTCCAGTAA-TTAAAACTCTACTCGTACAC--ATCTAATCAA--CATATTCACAAGTGTTTTGCCTTAACTAAAAATTTATATTAACACAAAGTCCTAGAATTATACTGCATAAACCCCCCAGGATTTGGAGAACA-TCATTCACCCTTCTTAATCCAAAACCTTGGGTGCCTGAAGATGGGGTTTTGATCATGGCCAGGCTGCAAATTTAGGTCAGGCTCTGGTGgtacatccttatatgcttggtgctt---tgcacaagtcaagacacacaatagaccctcaataaatatttgctgaatTTGAACAATTCCTGTAAAAAACCTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            85957 384 -    750284 AGCCAGGCTCTT-------------------------------------------------------------------------------------------AAATAATGAAACTTAACACTGTACTTAAAGGCCTGTTCTGATCAAATCATAAATGTGCACGCTAG-TGTTCTCCAGTAA-TTAAAACTCTACTCGTACAC--ATTTAATCAA--GATATTCACAAGTGTTTTGCCCTAACTAAGAATTTATATTAACACGAAGTCCTAGAATTATACTGCATAAA-CCCCCAGGATTTGGAGAACA-TCATTCACCCTTCTTAACCAAAAACCTT-GGTGCCTGAAGATGGGGTTTTGATCATGGCCAGGCTGCAAATTTAGGTTAGGCTCTGGTGGTAcatccttatatgctcg----------------gtcaagacacacaatagaccctcaataaatatttgctgaatttgaacgaTTCCTGT-AAAAATCTCA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1333976 398 -   1771730 TGCCAGGCTCTT-------------------------------------------------------------------------------------------AAATAATGAAACTTAACACTGTACGTAAAGGTCTGTTCTGATCAAATCATAAATGTGCACGCTAG-TGTTCTCCAGTAA-TTAAAACTCTACTCGTACAC--ATTTAATCAA--CATATTCACAAGTGTTTTGCCCTGACTAAAAATTTATATTAACACAAAGTCCTAGAATTCTACTGCATAAA-CCCCCAGGATTTGGAGAACA-TCATTCACCCTTCTTAATCAAAAACCTTGGGTGCCTGAAGATGGGGTTTTGATCATGGCCAGGCTGCAAATTTAGGTCAGGCTCTGGTGGtacatccttatatgcttgatgttt---tgcacaggtcaatacacacaatagaccctcaataaatatttgctgaatttgaACAATTCCTGT-AAAAATCTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      33720 395 -    566255 TGCCAGGCTCTT-------------------------------------------------------------------------------------------AAATAATGAAACTTAACACTGTACTTAAAGGGCTGTTCTGATCAAATCATAAATGTGCACGCTAG-TGTTCTCCAGTAA-TTAAAA--CTACTCGTACAC--ATTTAATCAA--CATATTCACAAGTGTTTTGCCTTAACTAAAAATTTATATTAACACGAAGTCCTAGAATTATACTGCATAAA-CTCCCAGGATTTGGAGAACA-TCATTCACCCTTCTTAATCCAAAACCTTGGGTGCCTGAAGATGGCGTTTTGATCATGGCCAGGCTGCAAA-TTAGGTCAGGCTTTGGTGgtacatccttatatgcttggtgctt---tgcataggtcaagacacacaatagaccctcaataaatatttgctgaatttgaacaattCCTGT-AAAAATCTCA
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               649879 379 + 123392446 TGCCAGACACTT-------------------------------------------------------------------------------------------AAATAATGAAACTAATCACTG--------------------TCAGATCATAAATGTGCACGTTAGTTGTGCGCCAGTAATTTAAGACTCTATTTGTACAC--ATATAATCAA--CATTTTCACAAGTATTTTGTCTTAACTAAAATTTTATATCAACAGGAAGTCCTATAATTATACCCCATGAG-CCTCCAGGATTTGGAGAACA-TTATTCACCGTTCTTAATCTGAAAACCTGGGTGCCTGAGGA-GGGGTCCTGACAGGAGCCAGGCTGCAGATTTAGGTCAGGCCCTACTggtgtgtctttatatgctcagcgctc---aacgcaggtccagacacatggtagaccctcagtaaatacttgttaaatttgaataaTTCCTGT-GAAAATCTCA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     681254 398 -   1411461 TGCCAGACACTT-------------------------------------------------------------------------------------------AACTAATGAAACTTAGTGCTGTACCAAAAGGGCTGTTCTTCTCAGATCATAAATGTGCACGCTAGTTGTGTGCCAGTAA-TTAAGACCCTACTTGTACAC--ATATAATCAA--CATTTTCACAAGTATTTTGTCTTAACTAAAATTTTATATTAACAGTAAGTCCTAGAATTATACCTCATGAG-CCTCCAGGATTTGGAGAACA-TTATTCACCCTTCTTAATCCGAAAGCTTGGGTGCCTGAGGATGGGGTCCTGATGGTAGCCAGGCTGCAGATTTAGGTCAGGCCCTActggtgcatc-ttatatgcttagtgctc---agcgtaggtccagacacatggtagaccctcaggaaatatttgttaaatttgaataaTTCCTGT-AAAAATCTCA
i proCoq1.NW_012149775v1   C 0 I 16
s otoGar3.GL873550           698214 391 +  18854210 TGCCAGGCATTT-------------------------------------------------------------------------------------------AAATAATTAAACTTAATATTATACCTAAAGGGCTTTTCTGCTCAAATCATAAATGTGCACGCTAGTTGTTTGCCAGTAA-TTCAGA--CTACTGGTACACTAATATAATCAA--CATTTTCACAACT-TTTTGCCTTAACTAAAACTTTATATCAACAGAAAGTCCTAGAATTATACTGCATAAG-CCTCCAGGATTTGGAGAACA-CTATTCACCCTTCTTAATCCAAAAGCTTGGGTGCCTGAGGATGGGGTCTTGAT-GTAGCCAGG-TGCAAAT-----TCAGGCCCTGctggtacatctttgtatgttcggtgttc---agcacaggtccagacacatggtagaccctcaataaatatttgttaaatTGCAGTAATTCCTGT-AAAAATCTCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58997759 351 -  94987271 TCCCATGCTCTT-----------------------------------------------------------------------------------------------AATGGGACCTGACGCG--ACTTAAAGAGCCGCTCTGCTCCAACAGTGAATGC----------TGTTTGCTAT-AA-TTAAGTCTCCGCCTGCACAC--GTTTCATTAATTTTTTTTCACAAGCTTTTTGTCATATTTACATTTCAGTATCAGT---AAGTTCCAGAA-TATAATCCACAGG-TCCCCAGAATTTGGAGAACCTTCACACACCCATCTTAATCCCAAAGTCTGTGCTCC-----ATGAGGTCTGGGTCACGAGCAGTCCT-------------GGCTCCGGCACCATACA---AAGGGTTTTGTACTT---AGCACAGTCCCAGACACAGA-------TTTGATAAATGTTCACTGAGTCTAGAAAATCCCTAT-AAAAAGCT--
i mm10.chr17               C 0 C 0
s canFam3.chr12              374577 490 +  72498081 cgtcgggcttctggtgcatggagcctgcttctccctctgcctgtgtctccgcctctctctctgtgtgtgactatcataaataaataaaaaattaaaaaaaaaaaaAAAAAGAAGCCTAACAGTGTACTTAAGGGGCTGGTCCACTCAAATAATAAATGTGCACCCTAGCTCTTTGC-AGTAT-TTAAGAAGTGACTTGTACAC--ATTTAATTAT--CATTTTCAGAAACATTTT--CTTACCTAAAAATTTCTATCAATAGGAAGTCCTAGAATTATAGTGTATGAG-CCCCAAAGATTTGGAGAACA-TCACACACCCTTCTTAATCCAAAAACTTGGATGCCTGAGAATGGGGTGTTAATCATGGCCAGGCTGCACATTTAGGTCAGACACTGTCCACACATCTTtatatgctcagtgtttaaaagcagaaatccagatgcatagtcagccctcagtaagtatttgttgaatttgaataaatCCTAT-AAAACGCTCA
i canFam3.chr12            I 117 C 0

a score=267147.000000
s hg38.chr6_GL000254v2_alt  1889642 26 +   4827813 TTAAGAGACATCAGCTTGGGACACAG
s panTro5.chr6             30735300 26 + 175400573 TTAAGAGACATCAGCTTGGGACACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31158953 26 + 173848474 TTAAGAGACATCAGCTTGGGACACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     665933 26 +   2037526 TTAAGAGACATCAGCTTGGGACACAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75334306 24 + 122973662 TTAAGAGACATCAGCTCGGGACAC--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31245720 24 + 172585720 TTTAGAGACATCAGCTTGGGACAC--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30534710 24 - 170955103 TTTAGAGACATCAGCTTGGGACAC--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     831041 24 +   1495729 TTTAGAGACATCAGCTTGGGACAC--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      54148 24 -    811324 TTTAGAGACATCAGCTTGGGACAC--
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30084696 24 -  71996105 TTTAGAGACATCAGCTTGGGACAC--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      91488 24 +    779361 TTTAGAGACATCAGCTTGGGACAC--
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     754875 24 -   1829203 TTTAGAGACATCAGCTTGGGACAC--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30915252 24 + 171630274 CTTAGAGACATCAGCTTGGGACAC--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            86341 24 -    750284 CTTAGAGACATCAGCTTGGGACAC--
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1334374 24 -   1771730 CTTAGAGACATCAGCTTGGGACAC--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      34115 24 -    566255 CTTAGAGACATCAGCTTGGGACAC--
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               650258 16 + 123392446 --------CGTCAGCTTGAGGTAC--
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           698605 16 +  18854210 --------CATCAGCTTGAGATAC--
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               58998110 13 -  94987271 ----------TCCG-TGGTGACAC--
i mm10.chr17               C 0 I 2
s canFam3.chr12              375067 24 +  72498081 TGCAGAGACAATAGCTCATCACAC--
i canFam3.chr12            C 0 C 0
e proCoq1.NW_012149775v1     681652 16 -   1411461 I

a score=425145.000000
s hg38.chr6_GL000254v2_alt  1889668 32 +   4827813 TTCCTCTCTTACTGTTCCTTCTCCCAGAA---GCT
s panTro5.chr6             30735326 32 + 175400573 TTCCTCTCTTACTGTTCCTTCTCCCAGAA---GCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31158979 32 + 173848474 TTCCTCTCTTACTGTTCCTTCTCCCAGAA---GCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     665959 32 +   2037526 TTCCTCTCTTACTGTTCCTTCTCCCAGAA---GCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75334330 30 + 122973662 TTCCTCTCTTACTGT--CCTCTCCCAGAA---GCT
i nomLeu3.chr1a            C 0 I 107
s rheMac8.chr4             31245744 32 + 172585720 TTCCTCTCTTACTGTTACTTCTCCCAGAA---GCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30534734 32 - 170955103 TTCCTCTCTTACTGTTACTTCTCCCAGAA---GCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     831065 32 +   1495729 TTCCTCTCTTACTGTTACTTCTCCCAGAA---GCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      54172 32 -    811324 TTCCTCTCTTACTGTTGCTTCTCCCAGAA---GCT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30084720 30 -  71996105 TTCCTCTC--ACTGTTGCTTCTCCCAGAA---GCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      91512 32 +    779361 TTCCTCTCTTACTGTTGCTTCTCCCAGAA---GCT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     754899 32 -   1829203 TTCCTCTCTTACTGTTGCTTCTCCCAGAA---GCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30915276 32 + 171630274 CTCCTCTCTTAATGTTCCTTCTCACAGAA---GCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            86365 32 -    750284 CTCCTCTCTTAATGTTCCTTCTCACAGAA---GCT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1334398 32 -   1771730 CTCCTCTCTTAATGTTCCTTCTCACAGAA---GCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      34139 32 -    566255 CTCCTCTCTTAATGTTCCTTCTCACAGAA---GCT
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               650274 32 + 123392446 CTTCTCTCTTACTGCTCCTTCTCCCAGTA---GCT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     681668 32 -   1411461 CTTCTCTCTTACTGCTCCTTCTCCCAGTA---GCT
i proCoq1.NW_012149775v1   I 16 C 0
s otoGar3.GL873550           698623 31 +  18854210 -TAGCTCTTTACAGCTTCTTCTTCCAGAA---GCT
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               58998125 29 -  94987271 ------CTCCACGGCTCCTTCACCCACAAAGCGCT
i mm10.chr17               I 2 C 0
s canFam3.chr12              375091 27 +  72498081 -----CTCTTACCACTTCTACTCCAAAAA---GCT
i canFam3.chr12            C 0 C 0

a score=1197456.000000
s hg38.chr6_GL000254v2_alt  1889700  96 +   4827813 -------CCTGGAATGAG-CAGGTCTGGCGGCAGGGGGCA-CACAGGGCTGCTGCTCAAATC--GGA--------GAATGGCACAAACTCCAAAAGGGAGCTGGATTT-----AGACCTC------------------
s panTro5.chr6             30735358  96 + 175400573 -------CCTGGAATGAG-CAGGTCTGGCAGCAGGGGGCA-CACAGGGCTGCTGCTCAAATC--GGA--------GAATGGCACAAACTCCAAAAGGGAGCTGGATTT-----AGACCTC------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31159011  96 + 173848474 -------CCTGGAATGAG-CAGGTCTGGCAGCAGGGGGCA-CACAGGGCTGCTGCTCAAATC--GGA--------GAATGGCACAAACTCCAAAAGGGAGCTGGATTT-----AGACCTC------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     665991  96 +   2037526 -------CCTGGAATGAG-CAGGTCTGGCAGCAGGGGGCA-CACAGGGCTGCTGCTCAAATC--GAA--------GAATGGCACAAACTCCAAAAGGGAGCTGGATTT-----AGACCTC------------------
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31245776  96 + 172585720 -------CCTGGAATGAC-TAGGTCTGGCAGCAGGGGGCG-CACAGGGCTGCTGCTCAAATC--AGA--------GAATGGCACAAACTCCAAAAGGGAGCTGGATTT-----AGACCTC------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30534766  96 - 170955103 -------CCTGGAATGAC-TAGGTCTGGCAGCAGGGGGCG-CACAGGGCTGCTGCTCAAATC--GGA--------GAATGGCACAAACTCCAAAAGGGAGCTGGATTT-----AGACCTC------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     831097  96 +   1495729 -------CCTGGAATGAC-TAGGTCTGGCAGCAGGGGGCG-CACAGGGCTGCTGCTCAAATC--GGA--------GAATGGCACAAACTCCAAAAGGGAGCTGGATTT-----AGACCTC------------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      54204  96 -    811324 -------CCTGGAATGAC-TAGGTCTGGCAGCAGGGGGCG-CACAGAGCTGCTGCTCAAATC--GGA--------GAATGGCACAAACTCCAAAAGGGAGCTGGATTT-----AGACCTC------------------
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30084750  96 -  71996105 -------CCTGGAATGAC-TAGGTCTGGCAGCAGGGGGCG-CACAGGGCTGCTGCTCAAATC--GGA--------GAATGGCACAAACTCCAAAAGGGAGCTGGATTT-----AGACCTC------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      91544  96 +    779361 -------CCTGGAATGAC-TAGGTCTGGCAGCAGGGGGCG-CACAGAGCTGCTGCTCAAATC--GGA--------GAATGGCACAAACTCCAAAAGGGAGCTGGATTT-----AGACCTC------------------
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     754931  96 -   1829203 -------CCTGGAATGAC-CAGATCTGGCAGCAGGGGGCG-CACAGGGCTGCTGCTCAAATC--GGA--------GAATGGCACAAACTCCAAAAGGGAGCTGGATTT-----AGACCTC------------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30915308  96 + 171630274 -------CCTGGAATGAC-CAGGTCTGGCAGCAGGGAGCA-CACGGGGCTGCTCTTCAAATC--AGA--------GAATGGAACAAACTCCAAAAGGGAACTGGAGTT-----AGACCTC------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            86397  94 -    750284 -------CCTGGAATGAC-CAGGTCTGGCAGGAGGGGGCA-CACAGGGCTGCTGCTCAAATC--AGA--------GAATGGAACAAACTCCAAAA-GGAACTGGAGTT-----A-ATCTC------------------
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1334430  96 -   1771730 -------CCTGGAATGAC-CAGGTCTGGCAGCAGGGGGCA-CACGGGGCTGCTGCTCAAATC--AGA--------GAATGGAACAAACTCCAAAAGAGAACTGGAGTT-----AGATCTC------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      34171  96 -    566255 -------CCTGGAATGAC-CAGGTCTGGCAGCAGGGGGCA-CACGGGGCTGCTGCTCAAATC--AGA--------GAATGGAACAAACTCCAAAAGGGAACTGGAGTT-----AGACCTC------------------
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               650306  97 + 123392446 -------CCTGGTAGAACTCGGGTTTGGCAGTAGGGGGCG-CACGGGGCCGCTGCTCAAATG--AGA--------GAGACAGGCAAACTCCAAAAGGGGGCTGGATTT-----AGACCTC------------------
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     681700  97 -   1411461 -------CCTGGTAGGACTCAGGTCTGGCAGCAGGGGGCG-CACGGGGCCGCTGCTCAAATG--AGA--------GAGAACAGCAAACTCCAAAAGGGGGTTGGATTT-----AGATCTC------------------
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           698654  91 +  18854210 -------CCTGGTATTACCCAGGTCTGGCAGCAGGGGGCG-CATGGGGCTGCTGCTCAAATC--AGA--------GAATGGCACAAACTCCAAAAGGGGGTTG-----------GACCTC------------------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58998154  92 -  94987271 ---------CGTAAAACC-AAGGCCAGGCAACAGGGGGTA--ACAGGACT-CTGTTGAAGTGAAGGA--------GAGGAGGGCTAATACC--AGGTGAGCCTGCCAT-----AGACCTC------------------
i mm10.chr17               C 0 C 0
s canFam3.chr12              375118 133 +  72498081 CCAAAGAGCTAGTAGACT-CAGATCTAGCAGCAGGAGGCAACATGAGGCTGCTGCTCAAATC--TGAGAGAGAAGGAATGGCACCAGCTGCATGAGGG--CTAGATTTCGACCAGGCCTCAAAGCCTGAAGTGACCTC
i canFam3.chr12            C 0 C 0
e nomLeu3.chr1a            75334360 107 + 122973662 I

a score=21028222.000000
s hg38.chr6_GL000254v2_alt  1889796 1305 +   4827813 CCCTCCCCATGT-------AGATAACGGGATTCCTAAGGTGCAGAGTGGGAGAATGGGTAGAGGAAGCAGGTTTCAGAGACTGAGAACCTACT----AAACTCCTAAGAGAACT-TTCCCTTGCAAAGAGAATGCATGAAAAAAGAAGGGAGAAGAGGAGAGAAGCCTCCCACAGCTGTTAGCCTGGAACAGCCGC----------TCTCACCTCAGTTCATCTGGGGAAGGGGCTACAAAGCAAACAATCTTTATTCACAATTGGGGTGGCAGAGGGGAGATACCCCCAGGTCAGTCCAAAAGCAAAGATACTGGGAGG-GAAGATGGCGCTGGGCGAGGAACTCAGCACTCATCCTCACCCAGCAGGGCATAAGGGTTTCGGCCAGCCAGGCTGGACCCTGGAGCCGAGGTTGGGGTctcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCCGTGGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAACCAAAACAAG-AAAAAAATGGAGGAGAGTTTTGAGCAAG-AAC-TAAAGCCAAGGAAAGATGGGGAAGAGGCAAAGACTAGGAATAACAATAAT-----CTTTAGAGCTGCTGGCATTCATTCATTCATccattcattcaacttcctatgtgcagattgctgaacagaacctttgtgcacatcaacttcaatctttacaatcactatgctaa----gggtcaattattaccctcagtttgcagatcaggaaaatatcac--agatgttaagtaac--agagctagccaacaggtacagaatccaggtttgacc----ct----ctctctggccacaaagcccacacccttttacctacgctaTAGCAGGGGGCTGGGGAAGAATATCTGGGCTCTGACCTTTCTGTTCACTGTAGCCTGGGGGATGAAAACACAGGCTGAGGCGGCCGTCCACTGCCAGCCGCAAGAGACTGTTGGCTGCTCTGTACACATCATTCCGAGCCGCCTTGGCTGTCTTGTAACCACGTTTCTCTGCCCAGGCTG-GAGGAAGAAAAGAAT-AATGGAAAGGGAAAGCATTAACCAGGTACCAGTTAT---ACTC-CCACTCCCATAACACAGTCCTTCC-AGTTTTCCCCAAAACATTCCAGGCCAGAGATCTTACTGGCTATGCAACAA--AAATCTAGGGGTGAGTGGACAGCAGCTTCATCAATGGCAGAATCTCTGAGGAGAGGAAAGGAGACAGGGAAGGGTAAAAGGCGAGGC
s panTro5.chr6             30735454 1306 + 175400573 CCCTCCCCATGT-------AGATAACGGGATTCCTAAGGTGCAGAGTGGGAGAATGGGTAGAGGAAGCAGGTTTCAGAGACTGAGAACCTACT----AAACTCCTAAGAGAACT-TTCCCTTGCAAAGAGAATGCATGAAAAAAGAAGGGAGAAGAGGAGAGAAGCCTCCCACAGCTGTTAGCCTGGAATAGCCGC----------TCTCACCTCAGTTCATCTGGGGAAGGGGCTACAAAGCAAACAATCTTTATTCACAATTGGGGTGGCAAAGGGGAGATACCCCCAGGTCAGTCCAAAAGCAAAGATACTGGGAGG-GAAGATGGTGCTGGGCGAGGAACTCAGCACTCATCCTCACCCAGCAGGGCATAAGGGTTTCGGCCAGCCAGGCTGGACCCTGGAGCCGAGGTTGGGGTctcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCCGTGGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAACCAAAACAAG-AAAAAAATGGAGGAGAGTTTTGAGCAAGGAAC-TAAAGCCAGGGAAAGATGGGGAAGAGGCAAAGACTAGGAATAACAATAAT-----CTTTAGAGCTGCTGGCATTCATTCATTCATccattcattcaacttcctatgtacagattgctgaacagaacctttgtgcacatcaacttcaatctttacaatcactatgctaa----gggtcaattattaccctcagtttgcagatcaggaaaatatcac--agatgttaagtaac--agagctagccaacaggtacagaatccaggtttgacc----ct----ctctctggccacaaagcccacacccttttacctacgctaTAGCAGGGGGCTGGGGAAGAATATCTGGGCTCTGACCTTTCTGTTCACTGTAGCCTGGGGGATGAAAACACAGGCTGAGGCGGCCGTCCACTGCCAGCCGCAAGAGACTGTTGGCTGCTCTGTACACATCATTCCGAGCCGCCTTGGCTGTCTTGTAACCACGTTTCTCTGCCCAGGCTG-GAGGAAGAAAAGAAT-AATGGAAAGGGAAAGCATTAACCAGGTACCAGTTAT---ACTC-CCACTCCCATAACACAGACCTTCC-AGTTTTCCCCAAAACATTCCAGGCCAGAGATCTTACTGGCTATGCAACAA--AAATCTAGGGGTGAGTGGACAGCAGCTTCATCAATGGCAGAATCTCTGAGGAGAGGAAAGGAGACAGGGAAGGGTAAAAGGCGAGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31159107 1306 + 173848474 CCCTCCCCATGT-------AGATAACGGGATTCCTAAGGTGCAGAGTGGGAGAATGGGTAGAGGAAGCAGGTTTCAGAGACTGAGAACCTACT----AAACTCCTAAGAGAACT-TTCCCTTGCAAAGAGAATGCATGAAAAAAGAAGGGAGAAGAGGAGAGAAGCCTCCCACAGCTGTTAGCCTGGAATAGCCGC----------TCTCACCTCAGTTCATCTGGGGAAGGGGCTACAAAGCAAACAATCTTTATTCACAATTGGGGTGGCAAAGGGGAGATACCCCCAGGTCAGTCCAAAAGCAAAGATACTGGGAGG-GAAGATGGTGCTGGGCGAGGAACTCAGCACTCATCCTCACCCAGCAGGGCATAAGGGTTTCGGCCAGCCAGGCTGGACCCTGGAGCCGAGGTTGGGGTctcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCCGTGGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAACCAAAACAAG-AAAAAAATGGAGGAGAGTTTTGAGCAAGGAAC-TAAAGCCAGGGAAAGATGGGGAAGAGGCAAAGACTAGGAATAACAATAAT-----CTTTAGAGCTGCTGGCATTCATTCATTCATccattcattcaacttcctatgtacagattgctgaacagaacctttgtgcacatcaacttcaatctttacaatcactatgctaa----gggtcaattattaccctcagtttgcagatcaggaaaatatcac--agatgttaagtaac--agagctagccaacaggtacagaatccaggtttgacc----ct----ctctctggccacaaagcccacacccttttacctacgctaTAGCAGGGGGCTGGGGAAGAATATCTGGGCTCTGACCTTTCTGTTCACTGTAGCCTGGGGGATGAAAACACAGGCTGAGGCGGCCGTCCACTGCCAGCCGCAAGAGACTGTTGGCTGCTCTGTACACATCATTCCGAGCCGCCTTGGCTGTCTTGTAACCACGTTTCTCTGCCCAGGCTG-GAGGAAGAAAAGAAT-AATGGAAAGGGAAAGCATTAACCAGGTACCAGTTAT---ACTC-CCACTCCCATAACACAGACCTTCC-AGTTTTCCCCAAAACATTCCAGGCCAGAGATCTTACTGGCTATGCAACAA--AAATCTAGGGGTGAGTGGACAGCAGCTTCATCAATGGCAGAATCTCTGAGGAGAGGAAAGGAGACAGGGAAGGGTAAAAGGCGAGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     666087 1302 +   2037526 CCCTCCCCGTGT-------AGATAACGGGATTCCTAAGGTGCAGAGTGGGAGAATGGGTAGAGGAAGCAGGTTTCAGAGACTGAGAATCTACT----AAACTCCTAAGAGAACT-TTCCCTTGCAAAGAGAATGCATGAAAAAAGAAGGGAGAAGAGGAGAGAAGCCTCCCACAGCTGTTAGCCTGGAACAGCCGC----------TCTCACCTCAGTTCATCTGGGGAA-GGGCTACAAAGCAAACAATCTTTATTCACAATTGGGGTGGCAGAGGGGAGATA-CCCCAGGTCAGTCCAAAAGCAAAGATACTGGGAGG-GAAGATGGCGTTGGGCGAGGAACTCAGCACTCATCCTCACCCAGCAGGGCATAAGGGTTTCGGCCAGCCAGGCTGGACCCTGGAGCCGAGGTTGGGGTctcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCCGTGGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAACCAAAACAAG-AAAAAAATGGAGGAGAGTTTTGAGCAAGGAAC-TAAAGCCAGGGAAAGATGGGGAAGAGGCAAAGACTAGGAATAACAATAAT-----CTTTAGAGCTGCTGGCATTCATTCATTCATccattcattcaacttcctatgtgcagattgctgaacagaacctttgtgcacatcaacttcaatctttacaatcactatgctaa----gggtcaattattaccctcagtttgcagatcaggaaaatatcac--agatgttaagtaac--agagctagccaacaggtacagaatccaggtttgacc----ct----ctctctggccacaaagcccacacccttttacctacgctaTAGCA-GGGGCTGGGGAAGAATATCTGGGCTCTGACCTTTCTGTTCACTGTAGCCTGGGGGATGAAAACACAGGGTGAGGCGGCCATCCACTGCCAGCCGCAAGAGACTGTTGGCTGCTCTGTACACATCATTCCGAGCCGCCTTGGCTGTCTTGTAACCACGTTTCTCTGCCCAGGCTG-GAGGAAGAAAAGAAT-AATGGAAAGGGAAAGCATTAACCAGGTACCAGTTAT---ACTC-CCACTCCCATAACACAGTCCTTCC-AGTTTTCCCCAAAACATTCCAGGCCAGAGATCTTACTGGCTATGCAACAA--AAATCTA-GGGTGAGTGGACAGCAGCTTCATCAATGGCAGAATCTCTGAGGAGAGGAAAGGAGACAGGGAAGGGTAAAAGGCGAGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75334467 1308 + 122973662 CCCTCCCCATGT-------AGATAATGGGATTTCTAAGGTGCAGAGTGGGAGAATGGGTAGAGGAAGCAGGTTTCAGAGACTGAGAACCTACTAAACAAACTCCTAAGAGAACT-TTCCCTTGCAAAGAGAATGCATGAAAAAAGAAGGGAGAAGAGGAGCGAAGCCTCCCACAGCTGTTAGCCTGGAACAGCTGC----------TCTCACCTCAGTTCATCTGGGGAAGGGGCTACAAAGCAAACAATCTTTATTCACAATTGGGGTGGCAGAGGGGAGATACCCCCAGGTCAGTCCAAAAGCAAAGATATTGGGTGG-GAAGATGACGCTGGGCGAAGAACTCAGCACTCATCCTCACCCAGTAGGGCATAAGGGTTTCGGCCAGCCAGGCTGGACCCTGGAGCTGAGGTTGGAGTGtcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCCGTGGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAACCAAAACAAG-AAAAAAAT---GGAGAGTTTTGAGCAAGGAAC-TAAAGCCAGAGAAAGATGGGGAAGAGGCAAAGACTAGGAATAACAATAAT-----CTTTATAGCTGCTGGCATTCATTCATTCATccattcattcaacttcctatgtgcagattgctgaacagaagctttgtgcacatcaacttcaatctttacaatcactatgctaa----gggtcaattattaccctcagtttgcagatcaggaaaatgtctc--agatgtcaagtaac--agagctggccaacaggtacagaatccaggtttgaccctctct----ctctctggccacaaagcccacacccttttacctacaccaTAGCAGAGGGCTGGGGAAGAATATCTGGGCTCTGACCTTTCTGTTCACTGTAGCCTGGGGGATGAAAACACAGGCTGAGGCGGCCGTCCACTGCCAGCCGCAAGAGACTGTTGGCTGCTCTGTACACATCATTCCGAGCCGCCTTGGCTGTCTTGTAACCACGTTTCTCTGCCCAGGCTG-GAGGGAGAAAAGAAT-AATGGAAAGGGAAGGCATTAACCAGGTACCAGTTAT---ACTC-TCACTCCCATAACACAGTCCTTCC-AGTTTTCCCCAAAACATTCCAGGCCAGAGATCTTACTGGCTATGCAACAA--AAATCTAGGGGTGAGTGGACAGCAGCT---TCAATGGCACAATCTCTGAGGAGAGCAAAGGAGACAGGGAGGGGTAAAAGGCGAGGA
i nomLeu3.chr1a            I 107 C 0
s rheMac8.chr4             31245872 1310 + 172585720 CCCTCCCCATGT-------AGATAATGGGATTCCTAAAGTGCAGAGTGGGAGAGTGGGTAGAGGAAGCAGGTTTCAGAGACTGAGAACCTACTAAACAAACTCCTAAGAGAACT-TTCCCTTGCAaagagaatacatgaaaaaagaagggagaagaggagagaagCCTCCCACAGCTGTTAGCCTGGAACAGCCG------------CTCACCTCAGTTCATCTGGGGAAGGGGCTACAAAGCAAACAATCTTTATTCACAATTGGGGTGGCAGAGGGGAGATACCCCCAGGTCAGTCCAAAAGCAAAGACATTGGGTGG-GAAGATGGCACTGGGCGAGGAACTCAGCACTCATCCTCACCCAGCAGGGCATAAGGGTTTCGGCCAGCCAAACTGGACCCTGGAGCTGAGGTTGGGGTGtcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCCGTGGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAACCAAAACAAG--AAAAAATGGAGGAGAGTTTTGAGCAAAGAAC-TAAAGCCAGAGAAAGATGGGGAAGAGGCAAAGACTAGGAATAACAATAAT-----CTTTATAGCTGCTGGCATTCATTCATTCATccattcattcaacttcctatgtgcagattgctgaacagaagctttgtgcacatcaacttcaatagttacaatcaccatgctaa----gggtcaattattaccctcagtttgcagatca-gaaaacgtctc--agatgttaagttac--agagctagccaacaggtacagaatccaggtttgacc----ctcttgctctctggccacaaagcccacacccttttacctataccatgGCAGGGGGCTAGGGAAGAATATCTGGGCTCTGACCTTTCTGTTCACTGTAGCCTGGGGGATGAAAACACAGGCTGAGGCGGCCGTCCACTGCCAGCCGCAAGAGACTGTTGGCTGCTCTGTACACATCATTCCGAGCCGCCTTGGCTGTCTTGTAACCACGTTTCTCTGCCCAGGCTG-GAGGGAGAAAAGAAT-AATGGAAAGAGAAGGCATTAACCAGATACCAGTTAT---ATTC-CCACTCCCATAACGCAGTCCTTCT-AGTTTTCCCCAAAACATTCCAGGCCAGAGATCTTACTGGCTATGCAACAA--AAATCTAGGGGTGAGTGGACAGCAGCTTCATCAATGGCAGAATCTCTGAGGAGAGGAAAGGAGACAGGGAAGGGTAAAAGGCGAGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30534862 1310 - 170955103 CCCTCCCCATGT-------AGATAATGGGATTCCTAAAGTGCAGAGTGGGAGAGTGGGTAGAGGAAGCAGGTTTCAGAGACTGAGAACCTACTAAACAAACTCCTAAGAGAACT-TTCCCTTGCAAAGAGAATACATGAAAAAAGAAGGGAGAAGAGGAGAGAAGCCTCCCACAGCTGTTAGCCTGGAACAGCCG------------CTCACCTCAGTTCATCTGGGGAAGGGGCTACAAAGCAAACAATCTTTATTCACAATTGGGGTGGCAGAGGGGAGATACCCCCAGGTCAGTCCAAAAGCAAAGACATTGGGTGG-GAAGATGGCACTGGGCGAGGAACTCAGCACTCATCCTCACCCAGCAGGGCATAAGGGTTTCGGCCAGCCAAACTGGACCCTGGAGCTGAGGTTGGGGTGtcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCCGTGGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAACCAAAACAAG--AAAAAATGGAGGAGAGTTTTGAGCAAGGAAC-TAAAGCCAGAGAAAGATGGGGAAGAGGCAAAGACTAGGAATAACAATAAT-----CTTTATAGCTGCTGGCATTCATTCATTCATccattcattcaacttcctatgtgcagattgctgaacagaagctttgtgcacatcaacttcaacagttacaatcaccatgctaa----gggtcaattattaccctcagtttgcagatca-gaaaacgtctc--agatgttaagttac--agagctagccaacaggtacagaatccaggtttgacc----ctcttgctctctggccacaaagcccacacccttttacctataccatgGCAGGGGGCTAGGGAAGAATATCTGGGCTCTGACCTTTCTGTTCACTGTAGCCTGGGGGATGAAAACACAGGCTGAGGCGGCCGTCCACTGCCAGCCGCAAGAGACTGTTGGCTGCTCTGTACACATCATTCCGAGCCGCCTTGGCTGTCTTGTAACCACGTTTCTCTGCCCAGGCTG-GAGGGAGAAAAGAAT-AATGGAAAGAGAAGGCATTAACCAGATACCAGTTAT---ATTC-CCACTCCCATAACACAGTCCTTCT-AGTTTTCCCCAAAACATTCCAGGCCAGAGATCTTACTGGCTATGCAACAA--AAATCTAGGGGTGAGTGGACAGCAGCTTCATCAATGGCAGAATCTCTgaggagaggaaaggagacagggaagggtaaaaggcgaggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     831193 1310 +   1495729 CCCTCCCCATGT-------AGATAATGGGATTCCTAAAGTGCAGAGTGGGAGAGTGGGTAGAGGAAGCAGGTTTCAGAGACTGAGAACCTACTAAACAAACTCCTAAGAGAACT-TTCCCTTGCAaagagaatacatgaaaaaagaagggagaagaggagagaagCCTCCCACAGCTGTTAGCCTGGAACAGCCG------------CTCACCTCAGTTCATCTGGGGAAGGGGCTACAAAGCAAACAATCTTTATTCACAATTGGGGTGGCAGAGGGGAGATACCCCCAGGTCAGTCCAAAAGCAAAGACATTGGGTGG-GAAGATGGCACTGGGCGAGGAACTCAGCACTCATCCTCACCCAGCAGGGCATAAGGGTTTCGGCCAGCCAAACTGGACCCTGGAGCTGAGGTTGGGGTGtcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCCGTGGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAACCAAAACAAG--AAAAAATGGAGGAGAGTTTTGAGCAAGGAAC-TAAAGCCAGAGAAAGATGGGGAAGAGGCAAAGACTAGGAATAACAATAAT-----CTTTATAGCTGCTGGCATTCATTCATTCATccgttcattcaacttcctatgtgcagattgctgaacagaagctttgtgcacatcaacttcaatagttacaatcaccatgctaa----gggtcaattattaccctcagtttgcagatca-gaaaacgtctc--agatgttaagttac--agagctagccaacaggtacagaatccaggtttgacc----ctcttgctctctggccacaaagcccacacccttttacctataccatgGCAGGGGGCTAGGGAAGAATATCTGGGCTCTGACCTTTCTGTTCACTGTAGCCTGGGGGATGAAAACACAGGCTGAGGCGGCCGTCCACTGCCAGCCGCAAGAGACTGTTGGCTGCTCTGTACACATCATTCCGAGCCGCCTTGGCTGTCTTGTAACCACGTTTCTCTGCCCAGGCTG-GAGGGAGAAAAGAAT-AATGGAAAGAGAAGGCATTAACCAGATACCAGTTAT---ATTC-CCACTCCCATAACACAGTCCTTCT-AGTTTTCCCCAAAACATTCCAGGCCAGAGATCTTACTGGCTATGCAACAA--AAATCTAGGGGTGAGTGGACAGCAGCTTCATCAATGGCAGAATCTCTGAGGAGAGGAAAGGAGACAGGGAAGGGTAAAAGGCGAGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      54300 1312 -    811324 CCCTCCCCATGT-------AGATAATGGGATTCCTAAAGTGCAGAGTGGGAGAGTGGGTAGAGGAAGCAGGTTTCAGAGACTGAGAACCTACTAAACAAACTCCTAAGAGAACT-TTCCCTTGCAAAGAGAATGCATGAAAAAAGAAGGGAGAAGAGGAGAGAAGCCTCCCACAGCTGTTAGCCTGGAACAGCCAC----------TCTCACCTCAGTTCATCTGGGGAAGGGGCTACAAAGCAAACAATCTTTATTCACAATTGGGGTGGCAGAAGGGAGATACCCCCAGGTCAGTCCAAAAGCAAAGACATTGGGTGG-GAAGATGGCACTGGGCGAGGAACTCAGCACTCATCCTCACCCAGCAGGGCATAAGGGTTTCGGCCAGCCAAACTGGACCCTGGAGCTGAGGTTGGGGTGtcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCCGTGGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAACCAAAACAAG--AAAAAATGGAGGAGAGTTTTGAGCAAGGAAC-TAAAGCCAGAGAAAGATGGGGAAGAGGCAAAGACTAGGAATAACAATAAT-----CTTTATAGCTGCTGGCATTCATTCATTCATccattcattcaacttcctatgtgcagattgctgaacagaagctttgtgcacatcaacttcaatagttacaatcaccaggctaa----gggtcaattattaccctcagtttgcagatca-gaaaacgtctc--agatgttaagttac--agagctagccaacaggtacagaatccaggtttgacc----ctcttgctctctggccacaaagcccacacccttttacctataccatgGCAGGGGGCTAGGGAAGAATATCTGGGCTCTGACCTTTCTGTTCACTGTAGCCTGGGGGATGAAAACACAGGCTGAGGCGGCCGTCCACTGCCAGCCGCAAGAGACTGTTGGCTGCTCTGTACACATCATTCCGAGCCGCCTTGGCTGTCTTGTAACCACGTTTCTCTGCCCAGGCTG-GAGGGAGAAAAGAAT-AATGGAAAGAGAAGGCATTAACCAGATACCAGTTAT---ATTC-CCACTCCCATAACACAGTCCTTCC-AGTTTTCCCCAAAACATTCCAGGCCAGAGATCTTACTGGCTATGCAACAA--AAATCTAGGGGTGAGTGGACAGCAGCTTCATCAATGGCAGAATCTCTGAGGAGAGGAAAGGAGACAGGGAAGGGTAAAAGGCGAGGC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30084846 1294 -  71996105 CCCTCCCCATGT-------AGATAATGGGATTCCTAAAGTGCAGAGTGGGAGAGTGGGTAGAGGAAGCAGGTTTCAGAGACTGAGAACCTACTAAACAAACTCCCAAGAGAACT-TTCCCTTGCAAAGAGAATGCATGAAAAAAGAAGGGAGAAGAGGAGAGAAGCCTCCCACAGCTGTTAGCCTGGAACAGCCGC----------TCTCACGTCAGTTCATCTGGGGAAGGGGCTACAAAGCAAACAATCTTTATTCACAATTGGGGTGGCAGAGGGGAGATACCCCCAGGTCAGTCCAAAAGCAAAGACATTGGGTGG-GAAGATGGCACTGGGCGAGGAACTCAGCACTCATCCTCACCCAGCAGGGCATAAGGGTTTCGGCCAGCCAAACTGGACCCTGGAGCTGAGGTTGGGGTGtcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCTGTGGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAACCAAAACAAG--AAAAAATGGAGGAGAGTTTTG--------------AGCCAGAGAAAGATGGGGAAGAGGCAAAGACTAGGAATAACAATAAT-----CTTTATAGCTGCTGGCATTCATTCATTCATccattcattcaacttcctatgtgcagattgctgaacagaagctttgtgcacatcaacttcaatagttacaatcaccatgctaa----gggtcaattattaccctcagtttgcagatca-gaaaacgtctc--agatgttaagttac--agagctagccaacaggtacagaatccaggtttgacc----ctcttgctctctggccacaaagcccacacccttttacctataccatgGCAGGGGGCTAGGGAAGAATATCTGGGCTCTGACCTTTCTGTTCACTGTAGCCTGGGGGATGAAAACACAGGCTGAGGCGGCCGTCCACTGCCAGCCGCAAGAGACTGTTGGCTGCTCTGTACACATCATTCCGAGCCGCCTTGGCTGTCTTGTAACCACGTTTCTCTGCCCAGGCTG-GAGGGAGAAAAGAAT-AATGGAAAGAGAAGGCATTAACCAGATGCCAGTTAT---ATTC-CCACTCCCATAACACAGTCCTTCC-AGTTTTCCCCAAAACATTCCAGGCCAGAGATCTTACTGGCTATGCAACAA--AAATCTAGGGGTGAGTGGACAGCAGCTTCATCAATGGCAGAATCTCTGAGGAG-----AGGAGACAGGGAAGGGTAAAAGGCGAGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      91640 1312 +    779361 CCCTCCCCATGT-------AGATAATGGGATTCCTAAAGTGCAGAGTGGGAGAGTGGGTAGAGGAAGCAGGTTTCAGAGACTGAGAACCTACTAAACAAACTCCTAAGAGAACT-TTCCCTTGCAAAGAGAATGCATGAAAAAAGAAGGGAGAAGAGGAGAGAAGCCTCCCACAGCTGTTAGCCTGGAACAGCCGC----------TCTCACCTCAGTTCATCTGGGGAAGGGGCTACAAAGCAAACAATCTTTATTCACAATTGGGGTGGCAGAGGGGAGATACCCCCAGGTCAGTCCAAAAGCAAAGACATTGGGTGG-GAAGATGGCACTGGGCGAGGAACTCAGCACTCATCCTCACCCAGCAGGGCATAAGGGTTTCGGCCAGCCAAACTGGACCCTGGAGCTGAGGTTGGGGTGtcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCCGTGGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAACCAAAACAAG--AAAAAATGGAGGAGAGTTTTGAGCAAGGAAC-TAAAGCCAGAGAAAGATGGGGAAGAGGCAAAGACTAGGAATAACAATAAT-----CTTTATAGCTGCTGGCATTCATTCATTCATccattcattcaacttcctatgtgcagattgctgaacagaagctttgtgcacatcaacttcaatagttacaatcaccaggctaa----gggtcaattattaccctcagtttgcagatca-gaaaacgtctc--agatgttaagttac--agagctagccaacaggtacagaatccaggtttgacc----ctcttgctctctggccacaaagcccacacccttttacctataccatgGCAGGGGGCTAGGGAAGAATATCTGGGCTCTGACCTTTCTGTTCACTGTAGCCCGGGGGATGAAAACACAGGCTGAGGCGGCCGTCCACTGCCAGCCGCAAGAGACTGTTGGCTGCTCTGTACACATCATTCCGAGCCGCCTTGGCTGTCTTGTAACCACGTTTCTCTGCCCAGGCTG-GAGGGAGAAAAGAAT-AATGGAAAGAGAAGGCATTAACCAGATACCAGTTAT---ATTC-CCACTCCCATAACACAGTCCTTCC-AGTTTTCCCCAAAACATTCCAGGCCAGAGATCTTACTGGCTATGCAACAA--AAATCTAGGGGTGAGTGGACAGCAGCTTCATCAATGGCAGAATCTCTGAGGAGAGGAAAGGAGACAGGGAAGGGTAAAAGGCGAGGC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     755027 1312 -   1829203 CCCTCCCCATGT-------AGATAATGGGATTCCTAAAGTGCAGAGTGGGAGAGTGGGTAGAGCAAGCAGGTTTCAGAGACTGAAAACCTACTAAACAAACTCCTAAGAGAACT-TTCCCTTGCAAAGAGAATGCATGAAAAAAGAAGGGAGAAGAGGAGAGAAGCCTCCCACAGCTGTTAGCCTGGAACAGCCGC----------TCTCACCTCAGTTCATCTGGGGAAGGGGCTACAAAGCAAACAATCTTTATTCACAATTGGGGTGGCAGAGGGGAGATACCCCCAGGTCAGTCCAAAAGCAAAGACATTGGGTGG-GAAGATGGCACTGGGCGAGGAACTCAGCACTCATCCTCACCCAGCAGGGCATAAGGGTTTCGGCCAGCCAAACTGGACCCTGGAGCTGAGGTTGGGGTGtcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCCGTGGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAACCAAAACAAG--AAAAAATGGAGGAGAGTTTTGAGCAAGGAAC-TCAAGCCAGAGAAAGATGGGGAAGAGGCAAAGACTAGGAATAACAATAAT-----CTTTATAGCTGCTGGCATTCATTCATTCATccattcattcaacttcctatgtgcagattgctgaacagaagctttgtgcacatcaacttcaatagttacaatcaccatgctaa----aggtcaattattacccccagtttgcagatca-gaaaacatctc--agatgttaagttac--agagctagccagcaggtacagaatccaggtttgacc----ctctcgctctctggccacaaagcccacacccttttacctataccaTAGCAGGGGACTAGGGAAGAATATTTGGGCTCTGACCTTTCTGTTCACTGTAGCCTGGGGGATGAAAACACAGGCTGAGGCGGCCGTCCACTGCCAGCCGCAAGAGACTGTTGGCTGCTCTGTACACATCATTCCGAGCCGCCTTGGCTGTCTTGTAACCACGTTTCTCTGCCCAGGCTG-GAGGGAGAAAAGAAT-AATGGAAAGAGAAGGCATTAACCAGATACCAGTTAT---ATTC-CCACTCCTGTAACACAGTCCTTCC-AGTTTTCCCCAAAACATTCCAGGCCAGAGATCTTACTGGCTATGCAACAA--AAATCTAGGGGTGAGTGGACAGCAGCTTCATCAATGGCAGAATCTCTGAGGAGAGGAAAGGAGACAGGGAAGGGTAAAAGGCGAGGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30915404 1319 + 171630274 CCCTCCCCATGT-------AGATAATGGGATTCCTAAGGTGCAGAGTGGGAGAGTGGGTAGAGGAAGCAGGTTTCAGAGACTGAGAACCTACTAAATAAACTCCTAAACGAACT-TTCCCTTGTAAAGAGAATGCATGAAAAAAGAAGGGAGAAGAGGAGAGAAGCCTCCCATAGCTGTTAGCCTGGAACAGCCGC----------TCTCACCTCAGTTCATCTGGGGAAGGGGCTACAAAGCAAACAATCTTTATTCACAATTGGGGCAGCAGAGGGGAGTTACCCCCAGGTCAGTCC-AAAGCAAAGATATTGGGTGG-GAAGATGGCACTGGGCGAGGAACTCAGCACTCATCCTCACCCAGCAGGGCATAAGGGTTTCGGCCAGCCAGGCTGGACCCTGGAGCCGAGGTTGGGGTGtcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCCGTGGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAACCAAAACAAG-AAAAGAATGGAGGAGAGTTTTGAGCAAAGAAC-TAAAGCCAGAGAAAGATGGGGAAGAGGCAAAGAGTAGGAATAACAAGAAT-----CTTTATACCTGCTTGcattcattcattcattcatccattcaActtcctatgtgcagattgctgaacagaagctttgtgcacatcaatttcagtctttacaatcaccatgctaa----gggtcaattattaccctcagtttgcagatcaggaaatcgtctc--agacattaagtaac--agagttggccaacagggacagaatccaggtttgaccc--tctctctctctctggccacaaagcccacacccttttacctataccaTAGCAGGGGACTGGGGAAGAATATCTGGGCTCTGACCTTTCTGTTCACTGTAGCCTGGGGGATGAAAACACAGGCTGAGGCGGCCATCCACTGCCAGCCGCAAGAGACTATTGGCTGCTCTGTACACATCATTCCGAGCTGCCTTGGCTGTCTTGTAACCACGTTTCTCTGCCCAGGCTG-GAGAGAGGAAAGAAT-AATGGAAAGGGAAGGCATTAACCAGGTACCAGTTATCATACTC-CCACTCCCATAACACAGTCCTTCCAAGTTTTCCCCAAAACATTCCAGGCCAGAGATCTTACTGGCTTTGCAACAA--AAATCTAGGGGTGAGTGGACAGCAGCTTCATCAATGGCAGAATCTCTGAGGAGAGGAAAGGAGACAGGGTAGGGTAAAAGGCAAGGC
i calJac3.chr4             C 0 I 12
s saiBol1.JH378327            86491 1318 -    750284 CCCTCCCCATGT-------AGATAATGGGATTCCTAAGGTGCAGAGTGGGAGAGTGGGTAGAGGAAGCAGGTTTCAGAGACTGAGAACCTACTAAATAAACTCCTAAAAGAACT-TTCCCTTGTAAAGAGAATGCATGAAAAAAGAAGGGAGATGAGGAGAGAAGCCTCCCACAGCTGTTAGCCTGGAACAGCCGC----------TCTCACCTCAGTTCATCTGGGGAAGGGGCTACAAAGCAAACAATCTTTATTCACAAGTGGGGCAGCAGAGGGGAGTTACCCCCAGGTCAGTCCAAAAGCAAAGATATTGGGTGG-AAAGATGGCACTGGGCAAGGAACTCAGCACTCATCCTCACCCAGCAGGGCATAAGGGTTTCGGCCAGCCAGGCTGGACCCTGGAGCTGAGGTTGGGGTGtcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCCGTGGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAACCAAAACAAG-AAAAGAATGAAGGAGAGTTTTGAGCAAAGAAC-TAAAGCCAGAGAAAGACGGGGAAGAGGCAAAGAGTAGGAATAACAATAAT-----Ctttatagctgcttacattcattcattcatccattcactcaactccctatatgcagactgctgaacagaagctttgtgcacatcaatttcaatctttacagtcaccatgctaa----gggtcaattattaccctcagtttgcagatcaggaaatcgcctc--agacgttaagtaac--agggttagccaacaggtacagaatccaggtttcacc----ctctctctctctggccacaaagcccaca-ccttttacctacaccaTAGCAGGGGACTGGGGAAGAATATCTGGGCTCTGACCTTTCTGTTCACTGTAGCCTGGGGGATGAAAACACAGGCTGAGGCGGCCGTCCACTGCCAGCCGCAAGAGACTATTGGCTGCTCTGTACACATCATTCCGAGCGGCCTTGGCTGTCTTGTAACCACGTTTCTCTGCCCAGGCTG-GAGGGAGGAAAGAATGGATGGAAAGGGAAGGCATTAACCAGGTACCAGTTATCATACTC-CCACTCCCATAACACAGTCCTTCCAAGTTTTCCCCAAAACATTCCAGGCCAGAGATCTTACTGGCTTTGCAACAA--AAATCTAGGGGTGAGTGGACAGCAGCTTCATCAATGGCAGAATCTCTGAGGAGAGGAAAGGAGACAGGGTAGGGTAAAAGGCGAGGC
i saiBol1.JH378327         C 0 I 12
s cebCap1.NW_016107755v1    1334526 1325 -   1771730 CCCTCCCCATGT-------AGATAATGGGATTCCTAAGGTGCAGAGTGGGAGAGTGGGTAGAGGAAGCAGGTTTCAGAGACTGAGAACCTAGTAAATAAACTCCTAAGAGAACT-TTCCCTTGTAAAGAGAATGCATGAAAAAAGAAGGGAGAAGAGGAGAGAAGCCTCCCACAGCTGTTAGCCTGGAACAG-CGC----------TCTCACCTCAGTTCATCTGGGGAAGGGGCTACAAAGCAAACAATCTTTATTCACAATTGGGGCAGCAGAGGGGAGTTACCCCCAGGTCAGTCCAAAAGCAAAGATATTGGGTGG-GAAGATGGCACTGGGTGAGGAACTCAGCACTCATCCTCACCCAGCAGGGCATAAGGGTTTCGGCCAGCCAGGCTGGACCCTGGAGCTGAGGTTGGGGTGtcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCCGTGGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAACCAAAACAAG-AAAAGAATGGAGGAGAGTTTTGAGCAAAGAAC-TAAAGCCAGAGAAAGATGGGGAAGAGGCAAAGAGTAGGAATAACAATAAT-----CTTTATAGCTGCTTGCATTCATTCATTCATccatgcattcaacttcctatgtgcagattgctgaacagaatctttgtgcacatcaatttcaatctttataatcaccatgctgattataggtcaattattaccctcagtttgtagatcaggaaatcatctc--agacgttaagtaac--agagttggccaacaggtacagaatccaggtttgaccctgtctctctctctctggccacaaagcccacacccttttacctataccaTAGCAGGGGACTGGGGAAGAATATCTGGGCTCTGACCTTTCTGTTCACTGTAGCCTGGGGGATGAAAACACAGGCTGAGGCGGCCATCCACTGCCAGCCGCAAGAGACTATTGGCTGCTCTGTACACATCATTCCGAGCTGCCTTGGCTGTCTTGTAACCACGTTTCTCTGCCCAGGCTG-GAGGGAGGAAAGAAT-GATGGAAAGGGAAGGCATTAACCAGGTACCGGTTATCAAACTC-CCACTCCCATAACACAGTCCTTCCGAGTTTTCCCCAAAACATTCCAGGCCAGAGATCTTACTGGCTTTGCAACAA--AAATCTAGGGGTGAGTGGACAGCAGCTTCATCAATGGCAGAATCTCTGAGGAGAGGAAAGGAGACAGGGTAGGGTAAAAGGCGAGGC
i cebCap1.NW_016107755v1   C 0 I 12
s aotNan1.NW_018511496v1      34267 1319 -    566255 CCTTCCCCATGT-------AGATAATGGGATTCCTAAGGTGCAGAGTGGGAGAGTGGGTAGAGGAAGCAGGTTTCAGAGACTGGGAACCTACTAAATAAACTCCTAAAAGAACT-TTCCCTTGTAAAGAGAATGCATGAAAAAAGAAGGGAGAAGAGGAGAGAAGCCTCCCACAGCTGTTAGCCTGGAACAGCCGC----------TCTCACCTCAGTTCATCTGGGGAAGGGGCTACAAAGCAAACAATCTTTATTCACAATTGGGGCAGCAGAGGGGAGTTACCCCCAGGTCAGTCCAAAAGC-AAGATATTGGGTGG-GAAGATGGCACCGGGCGAGGAACTCAGCACTCATCCTCACCCAGCAGGGCATAAGGGTTTCGGCCAGCCAGGCTGGACCCTGGAGCTGAGGTTGGGGTGtcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCCGTGGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAACCAAAACAAG-AAAAGAATGGAGGAGTTTTTTGAGCAAAGAAC-TAAAGCCAGAGAAAGATGGGGAAGAGGCAAAGAGTAGGAATAACAATAAT-----CTTTATAGCTGCCTGCATTCATTCATTCATctattcattcaacttcctatgtgcagattgctgaacagaagctttgtgcacatcaatttcaatctttacaatcaccatgctaa----gggtcaattattaccctcagtttgcagatcaggaaatcatctc--agacgttaagtaac--agagttggccaacaggtacagaatccaggtttgaccc--tctctctctctctggccacaaagcccacacccttttacctataccaTAGCAGGGGACTGGGGAAGAATATCTGGGCTCTGACCTTTCTGTTCACTGTAGCCTGGGGGATGAAAACACAGGCTGAGGCGGCCATCCACTGCCAGCCGCAAGAGACTATTGGCTGCTCTGTACACATCATTCCGAGCTGCCTTGGCTGTTTTGTAACCACGTTTCTCTGCCCAGGCTG-GAGAGAGGAAAGAAT-AATGGAAAGGGAAGGCATTAACCAGGTACCAGTTATCATACTC-CCACTCCCGTAACACAGTCCTTCCAAGTTTTCCCCAAAACATTCCAGGCCAGAGATCTTACTGGCTTTGCAACAA--AAATCTAGGGGTGAGTGGACAGCAGCTTCATCAATGGCAGAATCTCTGAGGAGAGGAAAGGAGACAGGGTAGGGTAAAAGGCGAGGC
i aotNan1.NW_018511496v1   C 0 I 16
s micMur3.chr6               650403 1265 + 123392446 CCCTCCCCATGT-------GGATAACGGGATTCCTAAGGTGCACAGTGGGAGAGTGGGCAGAGGAAGCAGGTTTCAGGGCCTCAGGACCCACTGAATTAACTCCTAAGAGAA------CTTTGTAAAGAAAATGCATGGAAAAAGAAGGGAAAAGAGGAGAGAAGCCTCCTGCAGCTGTCAGCCTAAAACAGCAGC----------TCTCACCTAAGTTCATCTAGGGAAGGGGCTACAAAGCAGACAATCTTTATTCACAATTGGGGTGGCAGAGGGGAGATA-CCCCAGGTCAGTCCAAAAGCAAAGGTATTGGGTGG-GAAGATGGTACCGGGTA-GGGACTCAGCACTCGTCCTCACCCAGCAGGGCATAAGGGTTTCGGGTGGCCAGGCTGGACCCTGGAGCTGAGGTTGGGGTGtcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCTTGCAAAACCACCAGCTCCGTGGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAACCAAAACAAGGAAAAGAATGGAGGAGAGTTTTGAGCAAGGAAC-TGAAGCTAGAGAAAGATGGGGAAGAGGCAAAAAACAGGAATAACAATAAT-----TTTTATAGTTGCTGG------------CATTcattcattcaaactctcatgtgcagagccctgagcagaagctctgtgcacatcaatctcaatgttcacaactaccatgctag----ggg-caattagcactctcagttttcagatcaggaaaccatctc--agatggtagaaaacacagacctggccaacaggtgcagaatccaggtctgacc----ctcgttctgtctggccacaaagcccacacactttc-------------------ATTGGGTAAGAATATTTGGGCTCTGACCTTTCTGTTCATTGTAGCCAGGGGGGTGAAAACACAGGCTGAGGCGGCCATCCACTGCCAGCCGCAGAAGGCTGTTGGCTGCTCTATACACATCATTCCGAGCCGCCTTGGCTGTCTTGTAACCACGTTTCTCTGCCCAGGCTG-GGGGGAGAAAAGATA-ACGGGAGGGGGGGACTGTTAACCAGGTA----------------CCACTGCTGTAGCACAGTCCTTTC-AGGTTTCCCCCAAACATT-CAGGCCAGAGATCTTGCTGTCCCTGCCACAG--AAATCTAGGGGTAAGTGGACAGCAGCTGCACCAATGGCAGAATCTCTGAAGAGAGGAAAGGTGACAGGGTAGGGTAAAGGGTGAGGC
i micMur3.chr6             C 0 I 11
s proCoq1.NW_012149775v1     681797 1263 -   1411461 CCCTCCCCATGT-------GGATAATGGGATTCCTAAGGTGCACAGTGGGAGAGTGGGCAGAGGAAGCAGGTTTCGGGGCCTCAGAACCCACTGAATTAACTCCTATGAGAACT-TT-CTTTGTAAAGAGAATGCAT------------GAAAAGAGGAGAGAAGCCTCCCACAGCCGTCAGCCTAAAACAGCCGC----------TCTCACTTCAGTTCATCTAGGGAAGGGGCTACAAAGCAGACAATCTTTATTCACAACTGGGGTGGCAGAGGGGAGATAGCCCCAGGTCAGTCCAAAAGCAAAGATATTGGGTGG-GAAGATGGTGCCGGGTG-GGGACTCAGCACTCGTCCTCACCCAGCAGGGCATAAGGGTTTCGGGTGGCCAGGCTGGACCCTGGAGCTGAGGTTGGGGTGtcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCCGTGGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAACCAAAACAAGAAAAAGAATGGAGGAGAGTTTTGAGCAAGGAACTTTGAGCCAGAGAAAGATGGGGAAGAGGCAAAGACTAGGAATAACAATAA------TTTTATAGCTGCTGG--------CACTCATTcattcattcagactctcacgtgcagagcactgaacagaagctttgtgcacagcaatctcaatcttcacaaccaccgtgttgg----ggg-caattagttccctcagttttcagatcaggaaaccacctc--agatggtagaaaacacagacctggccaacaggtgcagaatccaggtttgacc----ctcgctctgtctggacacaaagcccacaccctttT-------------------GCTGGGTAAGAATATCTGGGCTCTGACCTTTCTGTTCATTGTAGCCCGGGGGGTGAAAACACAGGCTGAGGCGGCCATCCACTGCCAGCCGCAGAAGGCTGTTGGCTGCTCTATACACGTCATTCCGAGCCGCCTTGGCTGTCTTGTAACCACGTTTCTCTGCCCAGGCTG-GAGGGAGAAAAGAAA-ACGGGAAGAGGGGACTGTTAACCAGGTA----------------CCACTGCCGTAACACTGTCCTTCC-AGTTTTCCCCCAAACGTTCCAGGCCAGAGATCTTGCTGTCCCTGCCACAG--AAATCTAGGGGTAAGGGGACAGCAGCTTCATCAATGGCAGAATCTCTGAAGGGAGGAAAGGAGACAGGGTAGGGTAAAGGGCGAGGC
i proCoq1.NW_012149775v1   C 0 I 11
s otoGar3.GL873550           698745 1300 +  18854210 TCCT-CCAGTGT-------AGATAATGGGATTCCTAAGTTACACGATGGGAGAGTGGGCAGAGGAAGCCGGTTTCGAGGTCTAAGAGCCCACTGAATTAACTCCTAAGAGAACT-TT-CTTTGCAAACAGAATGCATGAAAAAAGAAGGGAGAAGAGGAGAGAAACCTCCCACAGCTGTCAGCCTAAAACAGCCGC----------TCTCACCTCAGTTCATCTAGGGAAGGGGCTACAAAGCAGACAATCTTTATTCACAATTGGGGCGGCAGAGGGGAGATACCCCCAGGTCAGTCCAAAAGCAAAGATATTGGGTGG-GAAGATGGCACCAGGTG-GGAACTCAGCACTCGTCCTCACCCAGCAGGGCATAAGGGTTTCGGGCAGCCAGGCTGGACCCTGGAGCTGAGGTTGGGGTGtcctcatccccttctccctcctcatccgcatcccggtcctcctctccctcctcctcacaggagctgctcagctcttcctcttcctcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCTGTAGTCTCTGGATGGGACTCCCAGGTGCCTGGGGAATCAAAACAAGAAAAAGAATGGATGAGAGTTTTGAACAAGGAAC-TGAAGCCAGAGGAAGGTGGGGAAGAGGCAAAAACTAGGAATAACAATAAT-----CTTCAAACCTGCTGG----cattcattcattcattcattcaACCTCccatgtgcagagcactaaacagaagcattgtgcatatcaatttcaatcttcacaaccaccttgctgg----ggg-caattattacccttagctttcagatcaggaaaccatctc--agatggtaggaaacatacagctggccaaacggtgaagaatccaggcttgacc----ctcattctgttcagctacaaagcccacactcttttgcttatactaTAGCAGAGGGCTGAGGAAGAATATCTGGGCTCTGACCTTTCTGTTCATTGTAGCCTGGGGGATGAAAACACAGGCTGAGGCGGCCATCCACTGCCAGCCGCAGAAGGCTATTGGCTGCTCTATACACATCATTCCGAGCTGCCTTGGCTGTCTTGTAACCACGTTTCTCTGCCCAGGCTGAAAGGAAGAAAAGAAT-AATAGGAAGGGGTGCTGATAATCAGGTACCAGTCACCACACTCCCCACTGTCATAACAT--TCCTTCA-AGTTTTCCCCTGAACATTCTAGGCCAGAGATCTTGCTGGGCCTGCCACAG--AAACCTAGGGGT-------TAGCACCTTCATCAGTGGCAGAATCTCT-----GAGGAAAGGAGCCAGTTTAGGATAAAGGGCAAGGC
i otoGar3.GL873550         C 0 I 12
s mm10.chr17               58998246 1126 -  94987271 CTCTGTCCATG---------------GGGATTCCTAAAGTGCTATGTGAGAGAGTGGGCAGCGG--------------------------------------CCTCAGATAGCT-CTGCTTCCCAAAGAGAATGAA-------------GAAGAAAGGCAAAAAGCCTCCCACAGCGGTCAGCCCACACCGACCGC----------TCTCACCTCAGGCCACCTGGGGAAGGGGCTACAAAGCAGACAATCTTTATTCACAATCAGGGTGGCAAAGGGAAGACACCTCCAGCTCAGCCCAGAAGCAAAGCTGCTGAGGGG-GACG-TGGTACCAGGTGGGG--CTCAGCACTCATCCTCCCCGAGCAGGGCATACGGGTTTCGGGCTGTTAGGCAGGACCCAGGATCTGAAGTTGGGGTGTCCTCAtctccttctccctcttcatctgcatcccggtcctcctctccttcctcctcACAGGAGCTGCTCAGTtcctcctcctcttcctcctcctcATCACCTGCCGGCCCCACCCTGCCCTGCGACAGCACCAGCTCTGCAGTCTCTGGGTGAGACTCCCAGGTGCCTGAGGAACACAAACAGA-----------------TGTCTGAGCA---AAC-------------GAGCTGGGGCAGAGGTGAAGGCAAAG----GCA--AGT-----CTTCAAA--TGCTGGCACGCA---------CCCCTCACATGATTGCCTACCTGCAGA--GCTGAC---AAAGTTCCTGCATGCC--CTCAAGTCCCCACAGCCACCC-----A------------------------TTTGCACATCAGTAAACTATCAC---------------C--AGAACTGCCCA-----------------GAGTAGCC----------CTGGCTGGCCTTGAGGTCTAC--CCTGAGGCTGACCCCTCAGTAGGGACC--GTGGAGAACACGTGGGCTCTCACCTCTCTGTTCGCTGTAACCAGGAGGGTAGAAACATAGGCTGAGGCGGCCATCCACTGCCAGGCGAAGTAGGCTATTGGCCGCTCTGTACACGTCATTTCGAGCTGCCTTGGCCGTTTTATAACCACGTTTCTCTGCCCAAGCTA-AACAGAGAAAACAGT-AA-GTCAGGGACACCCGGGAACCAGGCTCCAGTCCCGTCAGCC-CCACGCC-------CAGTCTTTTC-AGTGTTCCAC---ACAGTCCAGGGAAGAGTTCTTGATTGTAGCAGAGTAAAGAAATTTAGGGGCAAGCAGACAACTCCTTTCTTGCGGCCAGAATCTGAGTGGGGAGGACAGGGTAGACAAGAGACAAAAGGGAGAGGC
i mm10.chr17               C 0 C 0
s canFam3.chr12              375251 1306 +  72498081 CCCTCCCCATGTTCCATGATGATAATGGGATTCATAAAGTGCAGAGTGGGAGAATGAGCAGA--AAGTGGACTCTGGGGCCTTAGCACCCAGTGAATTAACCCCTAAGAGAACTCTTCCTTCCCAAAGAGAATGCACAAGGCAAGAAGGGAAAAGAGGAGAAAAGCTTCCCAGAGCTGTTGGCCTAAAGCAGCCGCTCTCACCTGTTCTCACCTCAGTCCATCCGGGGAAGGGGCTACAAAGCAGACAATCTTTATTCACAATTGGGGCGGCAGAGGGGAGGTACCCCCAGGTCAGTCCAAAAGCAGAGATACTGGGTGGAGCAGGTGGCACAGGGTA-GGGACTCAGCACTCGTCCTCACCCAGTAGGGCATAAGGGTTTCGGGCAGCCAGGCTGGCTCCTGCAGCTGAAGTTGGGGTGtcctcatccccttccccctcctcatctgcatcccggtcttcctctccctcctcctcacaggagctgctcagctcttcttcttcttcctcctcctcgtcACCTGCTGGCCCCACCCTGCCCTGCAAAACCACCAGCTCTGTGGTCTCTGGATGGGACTCCCAAGTGCCTGGGGAAC-AAAACAAG-AAAAGAATGGAGAAGAGTTTTAAGCA-GTAAC-TAAAGCCAAAGAAAGAT-GAGAAGAGGCAAAGACTA--ACTAACACTAACATCGGTTTTGCAGCTGCTGG--------CATTCATTCACTCATTCCAACTCctatgtgctaagcaatgaacacaagttctgcatatgttaactctactctctaccaccaccttgccag----ggggcaactatcatcctggttttgcaggtcaggaaactgtctcggagatgcttagtaacacagagcaag-cggcaggtacaggatccaggtctgacc----ctcattctgtgtggccacagagcccacaccctttTGCCCATATTATAGCA----------TAAGAACTCTGGCTCTCTGACCTTTCTGTTCACTGTAGCCCGGGGGATGAAAACATAGGCTGAGGCGGCCATCCAGTGCCAGTCGTAGGAGGCTATTGGCTGCTCTGTACACATCGTTCCGGGCTGCCTTAGCTGTCTTATAACCACGCTTCTCTGCCCAGGCTG-GAGAGAGAAAAGAAT-AGCGGGGAGGGAAACCGTTAA----AGCCTTGTCATCACCACT-CTGTTCCCGTAACAAAGTCCTTCC-AGTTTTCTCCAGAACATCCCAGGCCACTGATCTTGCTGGCCCCACGACAG--AAATCCAGGCACGAGTAGCCAGGTACTTCATCAATGGCAGAACCTCT--GGAGAGGAGAGGAGATAGGGCAGGGTAAAAGG------
i canFam3.chr12            C 0 C 0

a score=87193.000000
s hg38.chr6_GL000254v2_alt  1891101  7 +   4827813 AGGT----AAG
s panTro5.chr6             30736760  7 + 175400573 AGGT----AAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31160413  7 + 173848474 AGGT----AAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     667389  7 +   2037526 AGGT----AAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75335775  7 + 122973662 AGGT----AAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31247182  7 + 172585720 AGGT----AAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30536172  7 - 170955103 aggt----aag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     832503  7 +   1495729 AGGT----AAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      55612  7 -    811324 AGGT----AAG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30086140  7 -  71996105 AGGT----AAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      92952  7 +    779361 AGGT----AAG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     756339  7 -   1829203 AGGT----AAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30916735  7 + 171630274 AGGT----AAG
i calJac3.chr4             I 12 C 0
s saiBol1.JH378327            87821  7 -    750284 AGGT----AAG
i saiBol1.JH378327         I 12 C 0
s cebCap1.NW_016107755v1    1335863  7 -   1771730 AGGT----AAG
i cebCap1.NW_016107755v1   I 12 C 0
s micMur3.chr6               651679  7 + 123392446 AGGT----AAG
i micMur3.chr6             I 11 C 0
s proCoq1.NW_012149775v1     683071 11 -   1411461 AGGTGAGGGAG
i proCoq1.NW_012149775v1   I 11 C 0
s otoGar3.GL873550           700057  7 +  18854210 AGGG----AAG
i otoGar3.GL873550         I 12 C 0
e mm10.chr17               58999372  0 -  94987271 C
e canFam3.chr12              376557  0 +  72498081 C
e aotNan1.NW_018511496v1      35586 16 -    566255 I

a score=4270111.000000
s hg38.chr6_GL000254v2_alt  1891108 247 +   4827813 GAAGAGCAGCTGAAACCAGGTGGGGCGAAGCCAGGCACATGGAACTCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCCGCTGAGGGGTCCTCAGCCTCTGGGTGGCGCAGGTGGAGCAGGGCCTGCACGGGAATTCGGGAGGCCAGGTAGCCCACAGCAGTGTAGGGCTCCTGGATCTGGGCGATAGGGTAGATCCCTGCCAGAACCTGAG-GGAAA---TGAGCACTCAGTACTTTCCTCAATG
s panTro5.chr6             30736767 247 + 175400573 GAAGAGCAGCTGAAACCAGGTGGGGCGAAGCCAGGCACATGGAACTCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCCGCTGAGGGGTCCTCAGCCTCTGGGTGGCGCAGGTGGAGCAGGGCCTGCACGGGAATTCGGGAGGCCAGGTAGCCCACAGCAGTGTAGGGCTCCTGGATCTGGGCGATAGGGTAGATCCCTGCCAGAACCTGAG-GGAAA---TGAGCACTCAGTACCTTCCTCAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31160420 247 + 173848474 GAAGAGCAGCTGAAACCAGGTGGGGCGAAGCCAGGCACATGGAACTCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCCGCTGAGGGGTCCTCAGCCTCTGGGTGGCGCAGGTGGAGCAGGGCCTGCACGGGAATTCGGGAGGCCAGGTAGCCCACAGCAGTGTAGGGCTCCTGGATCTGGGCGATAGGGTAGATCCCTGCCAGAACCTGAG-GGAAA---TGAGCACTCAGTACCTTCCTCAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     667396 244 +   2037526 GAAGAGCAGCTGAAACCAGGTGGGGC-AAGCCAGGCACATGGAACTCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCCACTGA-GGGTCCTCAGCCTCT-GGTGGCGCAGGTGGAGCAGGGCCTGCACGGGAATTCGGGAGGCCAGGTAGCCCACAGCAGTGTAGGGCTCCTGGATCTGGGCGATAGGGTAGATCCCTGCCAGGACCTGAG-GGAAA---TGAGTACTCAGTACCTTCCTCAATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75335782 247 + 122973662 GAAGAGCAGCTGAAACCAGGTGGGGCGAAGCCAGGCACATGGAACTCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCCGCTGAGGGGTCCTCAGCCTCTGGGTGGCGCAGGTGGAGCAGGGCCTGCACGGGAATTCGGGAGGCCAGGTAGCCCACAGCAGTGTAGGGCTCCTGGATCTGGGCGATGGGGTAGATCCCTGCCAGAACCTGAG-GGAAA---TGAGCACTCAGTACCTTCCTCAATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31247189 247 + 172585720 GAAGAGGAGCTGAAACCAGGTGGGGTGAAGCCAGGCACATGGAACTCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCCGCTGAGGGGTCCTCAGCCTCTGGGTGGCGCAAGTGGAGCAGGGCCTGCACGGGAATTCGGGAGGCCAGGTAGCCCACAGCAGTATAGGGCTCCTGGATCTGGGCGATGGGGTAGATCCCTGCCAGAACCTGAG-GGAAA---TGAGCACTCAGTACCTTCCTCAATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30536179 247 - 170955103 gaagaggagCTGAAACCAGGTGGGGTGAAGCCAGGCACATGGAACTCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCCGCTGAGGGGTCCTCAGCCTCTGGGTGGCGCAAGTGGAGCAGGGCCTGCACGGGAATTCGGGAGGCCAGGTAGCCCACAGCAGTATAGGGCTCCTGGATCTGGGCGATGGGGTAGATCCCTGCCAGAACCTGAG-GGAAA---TGAGCACTCAGTACCTTCCTCAATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     832510 247 +   1495729 GAAGAGGAGCTGAAACCAGGTGGGGTGAAGCCAGGCACATGGAACTCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCCGCTGAGGGGTCCTCAGCCTCTGGGTGGCGCAAGTGGAGCAGGGCCTGCACAGGAATTCGGGAGGCCAGGTAGCCCACAGCAGTATAGGGCTCCTGGATCTGGGCGATGGGGTAGATCCCTGCCAGAACCTGAG-GAAAA---TGAGCACTCAGTACCTTCCTGAATG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      55619 247 -    811324 GAAGAGCAGCTGAAACCAGGTGGGGTGAAGCCAGGCACATGGAACTCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCCGCTGAGGGGTCCTCAGCCTCTGGGTGGCGCAAGTGGAGCAGGGCCTGCACGGGAATTCGGGAGGCCAGGTAGCCCACAGCAGTATAGGGCTCCTGGATCTGGGCGATGGGGTAGATGCCTGCCAGAACCTGAG-GGAAA---TGAGCACTCAGTACCTTCCTCAATG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30086147 247 -  71996105 GAAGAGCAGCTGAAACCAGGTGGGGTGAAGCCAGGCACATGGAACTCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCCGCTGAGGGGTCCTCAGCCTCTGGGTGGCGCAAGTGGAGCAGGGCCTGCACGGGAATTCGGGAGGCCAGGTAGCCCACAGCGGTATAGGGCTCCTGGATCTGGGCGATGGGGTAGATCCCTGCCAGAACCTGAG-GGAAA---TGAGCACTCAGTACCTTCCTCAATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      92959 247 +    779361 GAAGAGCAGCTGAAACCAGGTGGGGTGAAGCCAGGCACATGGAACTCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCCGCTGAGGGGTCCTCAGCCTCTGGGTGGCGCAAGTGGAGCAGGGCCTGCACGGGAATTCGGGAGGCCAGGTAGCCCACAGCAGTATAGGGCTCCTGGATCTGGGCGATGGGGTAGATGCCTGCCAGAACCTGAG-GGAAA---TGAGCACTCAGTACCTTCCTCAATG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     756346 247 -   1829203 GAAGAGCAGTTGAAACCAGGTGGGGTGAAGCCAGGCACATGGAACTCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCCGCTGAGGGGTCCTCAGCCTCTGGGTGGCGCAAGTGGAGCAGGGCCTGCACAGGAATTCGGGAGGCCAGGTAGCCCACAGCAGTGTAGGGTTCCTGGATCTGGGCGATGGGGTAGATCCCTGCCAGAACCTGAG-GGAAA---TGAGCACTCAGTACCTTCCTCAATG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30916742 247 + 171630274 GAAGAGCAGCTGAAACCAGGTGGGGCGAAGCCAGGCACATGGAACTCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCCATTGAGGGGTCCTCAGTCTCTGGGTGGCGCAGGTGGAGCAGGGCCTGCACAGGGATTCGGGAGGCCAGGTAGCCCACAGCGGTATAGGGTTCCTGGATCTGGGCAATGGGGTAGATCCCTGCCAGAACCTGAG-GGGAA---TGAGCACTCAGTACCTTCCTCAATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            87828 247 -    750284 GAAGAGCAGCTGAAACCAGGTGGGGCGAAGCCAGGCACATGGAACTCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCCATTGAGGGGTCCTCAGCCTCTGGGTGGCGCAGGTGGAGCAGGGCCTGCACGGGGATTCGGGAGGCCAGGTAGCCCACAGCGGTATAGGGCTCTTGGATCTGGGCAATGGGGTAGATCCCTGCCAGAACCTGAA-GGGAA---TGAGCACTCAGTACCTTCCTCAATG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1335870 247 -   1771730 GAAGAGCAGCTGAAACCAGGTGGGGCGAAGCCAGGCACACGGAACTCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCCATTGAGGGGTCCTCAGCCTCTGGGTGGCGCAGGTGGAGCAGGGCCTGCACGGGGATTCGGGAGGCCAGGTAGCCCACAGCGGTATAGGGCTCTTGGATCTGGGCAATGGGGTAGATCCCTGCCAGAACCTGAG-GGGAA---TGAACACTCAGTACCTTCCTCAATG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      35602 247 -    566255 GGAGAGCAGCTGAAACCAGGTGGGGCGAAGCCAGGCACATGGAATTCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCCATTGAGGGGTCCTCAGCCTCTGGGTGGCGCAGGTGGAGCAGGGCCTGCACAGGGATTCGGGAGGCCAGGTAGCCCACAGCAGTATAGGGCTCCTGGATCTGGGCAATGGGGTAGATCCCTGCCAGAACCTGTG-GGGAA---TGAGCACTCAGTACCTTCCTCAATG
i aotNan1.NW_018511496v1   I 16 C 0
s micMur3.chr6               651686 248 + 123392446 GGAGGGCAGCTGAAACCATGTGGGGAGAAGCCAGGCATAAAGAACTCACCTTCACAGATGTCCCAGGCACACCAGGGCTGTTCTGCTGAGGGGTCCTCAGCCTCTGGGTGGCGCAGGTGGAGCAGGGCCTGCACAGGGATTCGGGAGGCCAGGTAGCCCACTGCGGTGTAGGGCTCCTGGATCTGGGCGATGGGGTAGATACCGGCCAGAACCTGTGGGGAAG---CGAGCACTCAGCACCTCCCTCCACG
i micMur3.chr6             C 0 I 22
s proCoq1.NW_012149775v1     683082 248 -   1411461 GGAGGGCAGCTGAAACCATGTGGGGAGAAGCCAGGCACAAGGAACTCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCTGCTGAGGGGTCCTCAGCCTCTGGGTGGCGCAGGTGGAGCAGGGCCTGCACGGGGATCCGGGAGGCCAGGTAGCCCACTGCGGTGTAGGGCTCCTGGATCTGCGCGATGGGGTAGATACCCGCCAGAACCTGCGGGGAAA---TGAGCACTCAGCACCTCCCTCAATG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           700064 248 +  18854210 GGAGGACAGCTGATACCACATGGGGAGAAGCCAAGCACATGGAAGTCACCTTCACAGATGTCCCAGGCACACCACGGGTGTTCCGCTGAGGGGTCTTCAGCCTCTGGGTGGCGCAGGTGAAGCATGGCCTGCACTGGAACTCGGGAGGCCAGGTAGCCCACAGCAGTGTAGGGCTCCTGGATCTGCGCAATGGGGTAGATACCAGCCAGAACCTGAGAAGAAA---CAAGCACTCAGCATCTCCCTCAATG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               58999372 206 -  94987271 -------------------------------------CAGGAAGCCCACCTTCACAGATGTCCCAGGCACACCAGGGGTGCTCAGCCGAAGGGTCCTCTGCCTCTGGGTGGCGCAGGTGCAGCAGGGCCTGCACGGGGATTCTGGAGGCCAGGTAGCCCACAGAAGTGTAGGGCTCCTGGATCTGGGCAATGGGGTAGATTCCAGCCAGAACCTGTG-GAAAC-----AGCACTTAGCACCTTGCACAG--
i mm10.chr17               C 0 C 0
s canFam3.chr12              376557 231 +  72498081 ------------------GAAGGGGAGAAGCCAGGCACACGGAGCCCACCTTCACAGATGTCCCAGGCACACCAGGGGTGTTCTGCTGAGGGATCCTTGGCCTCTGGGTGGCGCAGGTGGAGCAGGACCTGCACAGGGATTCGAGAGGCCAGGTAGCCCACAGCGGTGTACGGCTCCTGGATTTGGGCAATGGGGTAGATCCCTGCCAGAACCTGAG-GGGAAACAAGAATACTCAGTCTGTTCCTGGCC-
i canFam3.chr12            C 0 C 0

a score=360403.000000
s hg38.chr6_GL000254v2_alt  1891355 26 +   4827813 TCCCACCTTCTCTCTTTCCCTTACCC
s panTro5.chr6             30737014 26 + 175400573 TCCCACCTTCTCTCTTTCCCTTACCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31160667 26 + 173848474 TCCCACCTTCTCTCTTTCCCTTACCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     667640 26 +   2037526 TCCCACCTTCTCTCTTTCCCTTACCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75336029 26 + 122973662 TCCCACCTTCTCTCTTTCCCTTACCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31247436 26 + 172585720 TCCCACTTTCTCTCTTTCCCTTACCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30536426 26 - 170955103 TCCCACCTTCTCTCTTTCCCTTACCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     832757 26 +   1495729 TCCCACCTTCTCTCTTTCCCTTACCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      55866 26 -    811324 TCCCACCTTCTCTCTTTCCCTTAGCC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30086394 26 -  71996105 TCCCACCTTCTCTCTTTCCCTTACCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      93206 26 +    779361 TCCCACCTTCTCTCTTTCCCTTAGCC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     756593 26 -   1829203 TCCCACCTTCTCTCTTTCCCTTACCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30916989 26 + 171630274 TCGCACCTTCTCTCCTTCCCTTACCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            88075 26 -    750284 TCCCACCTTCTCTCTTTCCCTTACCC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1336117 26 -   1771730 TCCCACCTTTTCTCTTTCCCTTACCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      35849 26 -    566255 TCCCACCTTCTCTCTTTCCCTTACCC
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     683330 26 -   1411461 TCCAGCCTTCTCTCCCTCCTCTGCCC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           700312 26 +  18854210 TCCAGCCATCTCTCCCTCCTGTGCTC
i otoGar3.GL873550         C 0 I 6
s mm10.chr17               58999578 24 -  94987271 GTCCACCCTCTCTCCTCCCC--ACCC
i mm10.chr17               C 0 I 10
s canFam3.chr12              376788 25 +  72498081 TCCTGCCTTCTCTCCCTCCCTGCCC-
i canFam3.chr12            C 0 C 0
e micMur3.chr6               651934 22 + 123392446 I

a score=3816352.000000
s hg38.chr6_GL000254v2_alt  1891381 214 +   4827813 ACCCTCC-CCGTCATACCTGCAACTGCCTAGGCAGAAGAGATGGGAAGATGAGGCCTGGGCAGTCACAGAGCTTCACAGAGGGGGTAAGAAAGTAGGTCTGAAAGTATCGGGTATGGCCCGGGG-TTCTGGAGACACTCACGACTTTCCGCCCCACCAGCCCATTGATCAGCGAGGACTTTCCCACATTAGGGAAACCTGAGGAAGGCAAGGAAAA
s panTro5.chr6             30737040 214 + 175400573 ACCCTCC-CCGTCATACCTGCAACTGCCTAGGCAGAAGAGATGGGAAGATGAGGCCTGGGCAGTCACAGAGCTTCACAGAGGGGGTAAGAAAGTAGGTCTGAAAGTATCGGGTATGGCCCGGGG-TTCTGGAGACACTCACGACTTTCCGCCCCACCAGCCCATTGATCAGCGAGGACTTTCCCACATTAGGGAAACCTGAGGAAGGCAAGGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31160693 214 + 173848474 ACCCTCC-CCGTCATACCTGCAACTGCCTAGGCAGAAGAGATGGGAAGATGAGGCCTGGGCAGTCACAGAGCTTCACAGAGGGGGTAAGAAAGTAGGTCTGAAAGTATCGGGTATGGCCCGGGG-TTCTGGAGACACTCACGACTTTCCGCCCCACCAGCCCATTGATCAGCGAGGACTTTCCCACATTAGGGAAACCTGAGGAAGGCAAGGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     667666 214 +   2037526 ACCCTCC-CCGTCATACCTGCAACTGCCTAGGCAGAAGAGATGGGAAGATGAGGCCTGGGCAGTCACAGAGCTTCACAGAGGGGGTAAGAAAGTAGGTCTGAAAGTATCGGGTATGGCCCGGGG-TTCTGGAGACACTCACGACTTTCCGCCCCACCAGCCCATTGATCAGCGAGGACTTTCCCACATTAGGGAAACCTGAGGAAGGCAAGGAAAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75336055 215 + 122973662 ACCCTCC-CCGTCATACCTGCAACTGCCTAGGCAGAAGAGATGGGAAGATGAGGCCTGGGCAGTCACAGAGTTTCACAGAAGGGGTAAGAAAGTAGGTCTGAAAGTATCGGGTATGGCCCGGGGTTTCTGGAGACACTCACGACTTTCCGCCCCACCAGCCCATTGATCAGTGAGGACTTTCCCACATTAGGGAAACCTGAGGAAGGCAAGGAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31247462 214 + 172585720 ACCCTCC-CTCTCATACCTGCAACTGCCTAGGCAGAAGAGATGGGAAGATGAGGCCCGGGCAGTCACAGAGCTTCACGGAGGGAGTAAGAAAGTAGGTCTGAAAGTATCGGGTATGGCCTGGGG-TTCTGGAGACACTCACAACTTTCCGCCCCACCAGCCCATTGATCAGCGAGGACTTTCCCACATTAGGGAAACCTGAGGAAGGCAAGGAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30536452 214 - 170955103 ACCCTCC-CCCTCATACCTGCAACTGCCTAGGCAGAAGAGATGGGAAGATGAGGCCCGGGCAGTCACAGAGCTTCACGGAGGGAGTAAGAAAGTAGGTCTGAAAGTATCGGGTATGGCCTGGGG-TTCTGGAGACACTCACAACTTTCCGCCCCACCAGCCCATTGATCAGCGAGGACTTTCCCACATTAGGGAAACCTGAGGAAGGCAAGGAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     832783 214 +   1495729 ACCCTCC-CCCTCATACCTGCAACTGCCTAGGCAGAAGAGATGGGAAGATGAGGCCCGGGCAGTCACAGAGCTTCACGGAGGGAGTAAGAAAGTAGGTCTGAAAGTATCGGGTATGGCCTGGGG-TTCTGGAGACACTCACAACTTTCCGCCCCACCAGCCCATTGATCAGCGAGGACTTTCCCACATTAGGGAAACCTGAGGAAGGCAAGAAAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      55892 214 -    811324 ACCCTCC-CCCTCATACCTGCAACTGCCTAGGCAGAAGAGATGGGAAGATGAGGCCCGGGCAGTCACAGAGCTTCACGGAGGGAGTAAGAAAGTAGGTCTGAAAGTATCGGGTATGGCCTGGGG-TTCTGGAGACACTCACGACTTTCCGCCCCACCAGCCCATTGATCAGCGAGGACTTTCCCACATTAGGGAAACCTGAGGAAGGCAAGGACAT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30086420 214 -  71996105 ACCCTCC-CCCTCATACCTGCAACTGCCTAGGCAGAAGAGATGGGAAGATGAGGCCTGGGCAGTCACAGAGCTTCACAGAGGGAGTAAGAAAGTAGGTCTGAAAGTATCGGGTATGGCCTGGGG-TTCTGGAGACACTCACGACTTTCCGCCCCACCAGCCCATTGATCAGCGAGGACTTTCCCACATTAGGGAAACCTGAGGAAGGCAAGGAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      93232 214 +    779361 ACCCTCC-CCCTCATACCTGCAACTGCCTAGGCAGAAGAGATGGGAAGATGAGGCCTGGGCAGTCACAGAGCTTCACGGAGGGAGTAAGAAAGTAGGTCTGAAAGTATCGGGTATGGCCTGGGG-TTCTGGAGACACTCACGACTTTCCGCCCCACCAGCCCATTGATCAGCGAGGACTTTCCCACATTAGGGAAACCTGAGGAATGCAAGGACAT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     756619 214 -   1829203 ACCCTCC-CCCTCATACCTGCAACTGCCTAGGCAGAAGAGATGGGAAGATGAGGCCCGGGCAGTCACAGAGCTTCACGGAGGGGGTAAGAAAGTAGGTCTGAAAGTATCGGGTATGGCCCGGAG-TTCTGGAGACACTCACGACTTTCCGCCCCACCAGCCCATTGATCAGCGAGGACTTTCCCACATTAGGGAAACCTGAGGAAGGCAAGGAAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30917015 214 + 171630274 ACCCTCC-CCATCATACCTGCAACTGCCTAGGCAGAAGAGATGGGAAGATGAGGCCCGGGCAGTCACAAAGCTTCACGGATGGGGTAAGAAAGTAGGTCTGAAAGTATCGGGTATGGCCTGGGG-TTCTGGAGACACTCACAACTTTCCGCCCCACCAGCCCATTGATCAGCGAGGACTTTCCCACATTAGGGAAACCTGAAGAACGCAAGGAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            88101 214 -    750284 ACCCTCC-CCGTCATACCTGCAACTGCCTAGGCAGAAGGGATGGAAAGATGAGGCCCGGGCAGTCACAAAGCTTCACGGATGGGGTAAGAAAGTAGGTCTGAAAGTATCGGGTATGGCCCGGGG-TTCTGGAGACACTCACAACTTTCCGCCCCACCAGCCCATTGATCAGCGAGGACTTTCCCACATTAGGGAAACCTGAAGAAGGCAAGGAAAA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1336143 214 -   1771730 ACCCTCC-CCGTCATACCTGCAACTGCCTAGGCAGAAGAGATGGGAAGATGAGGCCCGGGCAGTCACAAAGCTTCACGGATGGGGTAAGAAAGTAGGTCTGAAAGTATCGGGTATGGCCTGGGG-TTCTGGAGACACTCACAACTTTCCGCCCCACCAGCCCATTGATCAGCGAGGACTTTCCCACATTAGGGAAACCTGAAGAAGGCAAGGAAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      35875 214 -    566255 ACCCTCC-CCGTCATACCTGCAACTGCCTAGGCAGAAGAGATGGGAAGATGAGGCCCGGGCAGTCACAAAGCTTCACGGATGGGGTAAGAAAGTAGGTCTGAAAGTATCGGGTATGGCCCGGGG-TTCTGGAGACACTCACAACTTTCCGCCCCACCAGCCCATTGATCAGCGAGGACTTTCCCACATTAGGGAAACCTGAAGAAGGCAAGAAAAA
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               651956 215 + 123392446 ACCCTCTGCCCTCATACCTGCAACTGCCTGGGCAGGAGAGATGGGAAGATGAGGCCCGGGCAGTCACAGAGCTTCACGGAGGGAGTGAGAAAGTAGGTCTGAAAGTATCGGGTATGGCCTGGGG-TTCTGGACACACTCACGACCTTCCGCCCCACCAGCCCATTGATTAGCGATGACTTTCCCACATTGGGAAAACCTGAGGAAGGCAAGGAAAA
i micMur3.chr6             I 22 C 0
s proCoq1.NW_012149775v1     683356 212 -   1411461 ---CTCTGCCCTCATACCTGCAACTGCCTGGGCAGGAGAGATGGGAAGATGAGGCCCGGGCAGTCACAGAGCTTCACGGAGGGGGTGAGAAAGTAGGTCTGAAAGTATCGGGTATGGCCTGGGG-TTCTGGACACACTCACGACCTTCCGTCCCACCAGCCCGTTGATCAGCGAGGACTTCCCCACATTGGGAAAACCTGAGGAAGGCAAGGAAAA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           700344 215 +  18854210 CCCATTTGCCCTCATACCTGCAACTGCCTGGGCAGAAGAGATGGGAAAATGAGGCCTGGGCAGTCACAAAGCTTCACGGTGGGGGTGAGAAAGTAGGTTTGAAAGTATCGAGTATGGCCTGGGG-TTCTGGAGACACTCACAACCTTCCGCCCCACCAGCCCATTGATGAGCGAGGACTTTCCCACATTGGGAAAACCTGAGGAAAGCAAGGAAAA
i otoGar3.GL873550         I 6 C 0
s mm10.chr17               58999612 213 -  94987271 CCTTTCT-ACCACATACCTGCAGCTGCCTGGGCAGCAGCGAGGGGAAGATAAGGCCCGGGCAGTCACAGAGCTTCACAGAGGGGGTCAGAAAGTAGGTCTGAAAATACCGGGTGTGGCCTGGCG-TTCTGGAGACACTCACCACCTTCCGCCCCACCAGCCCGTTGATCAGAGAGGACTTCCCCACATTGGGGAAACCT-AGAAAGGCAATGCAAA
i mm10.chr17               I 10 I 3677
s canFam3.chr12              376813 212 +  72498081 --CCTCTGCCCTCATACCTGTAACTGCCTGGGAAGAAGGGATGGGAATATGAGTCCAGGGCAATCACAGAGCTTCACAGAGGGGGTGAGAAAGTAGGTCTGAAAGTATCGGGTGTGGCCGGGGG-TTCTGGAGACACTCACAACCTTTCTACCCACCAGCCCGTTGATCAGTGAGGACTTGCCCACATTAGGGAAACCTAAGGAAGGCAAAAAAC-
i canFam3.chr12            C 0 C 0

a score=17290.000000
s hg38.chr6_GL000254v2_alt  1891595 1 +   4827813 T
s panTro5.chr6             30737254 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31160907 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     667880 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75336270 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31247676 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30536666 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     832997 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      56106 1 -    811324 T
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30086634 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      93446 1 +    779361 T
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     756833 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30917229 1 + 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            88315 1 -    750284 T
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1336357 1 -   1771730 T
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      36089 1 -    566255 T
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               652171 1 + 123392446 T
i micMur3.chr6             C 0 I 351
s proCoq1.NW_012149775v1     683568 1 -   1411461 T
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           700559 1 +  18854210 T
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              377025 1 +  72498081 T
i canFam3.chr12            C 0 C 0
e mm10.chr17               58999825 3677 -  94987271 I

a score=594166.000000
s hg38.chr6_GL000254v2_alt  1891596 50 +   4827813 TAACGTTTAACAGGTTTCT-ACTCTGTGATG----GGACTTGGTGCTATACCTAT
s panTro5.chr6             30737255 50 + 175400573 TAATGTTTAACAGGTTTTT-ACTCTGTGATG----GGACTTGGTGCTATACCTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31160908 50 + 173848474 TAATGTTTAACAGGTTTTT-ACTCTGTGATG----GGACTTGGTGCTATACCTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     667881 50 +   2037526 TAATGTTTAACAGGTTTTT-ACTCTGTGATG----GGACTTAGTGCTATACCTAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75336271 50 + 122973662 TAATGTTTAACAGGTTTTT-ACTCTGTGATG----GGACTTGGTGCTATACCTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31247677 50 + 172585720 TAATGTTTAACAGGTTTTT-ACTCTGTGGTG----GGACTTGGTGCTATACCTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30536667 50 - 170955103 TAATGTTTAACAGGTTTTT-ACTCTGTGGTG----GGACTTGGTGCTATACCTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     832998 50 +   1495729 TAATGTTTAACAGGTTTTT-ACTCTGTGGTG----GGACTTGGTGCTATACCTAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      56107 50 -    811324 TAATGTTTAACAGGTTTTT-ACTCTGTGGTG----GGACTTGGTGCTATACCTAT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30086635 50 -  71996105 TAATGTTTAACAGGTTTTT-ACTCTGTGGTG----GGACTTGGTGCTATACCTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      93447 50 +    779361 TAATGTTTAACAGGTTTTT-ACTCTGTGGTA----GGACTTGGTGCTATACCTAT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     756834 50 -   1829203 TAATGTTTAACAGGTTTTT-ACTCTGTGGTG----GGACTTGGTGCTATACCTAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30917230 53 + 171630274 TAATGTTTAACAGATCTTT-ACTCTATGATGGG-AGGACTTGGTGCTATACCTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            88316 51 -    750284 TAATGTTTAACAGGTCTTTAACTCTATGATG----GGACTGGGTGCTATACCTAT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1336358 50 -   1771730 TAATGTTTAACAGGTCTTT-TCTCTATGATG----GGAATTGGTGCTATACCTAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      36090 50 -    566255 TAATGTTTAACAGGTCTTT-ACTTTATGATG----GGACTTGGTGCTATACCTAT
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     683569 53 -   1411461 -CACATTGGACATGGCTTT-GCTCTGTGATGGGCAGGACTCAGCGCTGTAGCTAC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           700560 52 +  18854210 TAACATTTAGCATGCCTTT-ACTCTTTGATGGGCAGGACTCA--GCTGTAGCTGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              377026 52 +  72498081 TAATAGCGGACAGATCCCT-ACTCTGTGAGG--CAGGATGCAGTGCTATAGCTAT
i canFam3.chr12            C 0 I 200
e micMur3.chr6               652172 351 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I

a score=324035.000000
s hg38.chr6_GL000254v2_alt  1891646 23 +   4827813 AGGTAAAAGGGGAACTAAGGCTC
s panTro5.chr6             30737305 23 + 175400573 AGGTAAAAGGGGAACTAAGGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31160958 23 + 173848474 AGGTAAAAGGGGAACTAAGGCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     667931 23 +   2037526 AGGTAAAAGGGGAACTAAGGCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75336321 22 + 122973662 AGGTAAAAGGGG-ACTAATGCTC
i nomLeu3.chr1a            C 0 M 100
s rheMac8.chr4             31247727 23 + 172585720 AGGTAAAAGGGGAACTAAGGCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30536717 23 - 170955103 AGGTAAAAGGGGAACTAAGGCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     833048 23 +   1495729 AGGTAAAAGGGGAACTAAGGCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      56157 23 -    811324 AGGTAAAAGGGGAACTAAGGCTC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30086685 23 -  71996105 AGGTAAAAGGGGAACTAAGGCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      93497 23 +    779361 AGGTAAAAGGGGAACTAAGGCTC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     756884 23 -   1829203 AGGTAAAAGGGGAACTAAGGCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30917283 23 + 171630274 AGGTAAAAGGGGAACTAAGGCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            88367 23 -    750284 AGGTAAAAGGGGAACTAAGACTC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1336408 23 -   1771730 AGGTAAAAGGGGAACTAAGGCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      36140 23 -    566255 GGGTAAAAGGGGAACTAAGGCTC
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     683622 23 -   1411461 AGCTGAAAGGAGAACTAAGGCTC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           700612 23 +  18854210 AAATGAAAGGAGAACTAAGGCTC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              377278 23 +  72498081 aaTTAAAAAGGGAAGTAAGGCAC
i canFam3.chr12            I 200 C 0
e micMur3.chr6               652172 351 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I

a score=173706.000000
s hg38.chr6_GL000254v2_alt  1891669 13 +   4827813 AGAAATTAAGGAA
s panTro5.chr6             30737328 13 + 175400573 AGAAATTAAGGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31160981 13 + 173848474 AGAAATTAAGGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     667954 13 +   2037526 AGAAATTAAGGAA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31247750 13 + 172585720 AGAAATTAAGGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30536740 13 - 170955103 AGAAATTAAGGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     833071 13 +   1495729 AGAAATTAAGGAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      56180 13 -    811324 AGAAATTAAGGAA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30086708 13 -  71996105 AGAAATTAAGGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      93520 13 +    779361 AGAAATTAAGGAA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     756907 13 -   1829203 AGAAATTAAGGAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30917306 13 + 171630274 AGAAATTAAGGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            88390 13 -    750284 AGAAATTAAGGAA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1336431 13 -   1771730 AGAAATTAAGGAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      36163 13 -    566255 AGAAATTAAGGAA
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     683645 13 -   1411461 AGAAATTAAGGAA
i proCoq1.NW_012149775v1   C 0 I 5
s otoGar3.GL873550           700635 13 +  18854210 AGAAATTAAGGAA
i otoGar3.GL873550         C 0 I 295
s canFam3.chr12              377301 13 +  72498081 AGATGTTACAGAA
i canFam3.chr12            C 0 C 0
e micMur3.chr6               652172 351 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e nomLeu3.chr1a            75336343 100 + 122973662 M

a score=1146760.000000
s hg38.chr6_GL000254v2_alt  1891682 101 +   4827813 -----atggtattgcagaatacaaatcacgctctgggctgccagggttaaatcctggcccttccacttaccagctttgtgatgtcagggc------aactaact-----ttctgagc
s panTro5.chr6             30737341 101 + 175400573 -----atggtattgcagaatacaaatcacgctctgggctgccagggttaaatcctggcccttccacttaccagctttgtgatgtcagggc------aactaact-----ttctgagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31160994 101 + 173848474 -----atggtattgcagaatacaaatcacgctctgggctgccagggttaaatcctggcccttccacttaccagctttgtgatctcagggc------aactaact-----ttctgagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     667967 101 +   2037526 -----atggtattgcagaatacaaatcacgctctgggctgccagggttaaatcctggcccttccacttaccagctttgtgatgtcagggc------aactaact-----ttctgagc
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31247763 101 + 172585720 -----ATGGTATTGCAGAATACAAATCATGCTCTGGGCTCGCAgggttaaatcctggcccttccacttaccagctttgtgatgtcagggc------aactaact-----ttctgagt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30536753 101 - 170955103 -----ATGGTATTGCAGAATACAAATCATGCTCTGGGCTCGCAgggttaaatcctggcccttccacttaccagctttgtgatgtcagggc------aactaact-----ttctgagt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     833084 101 +   1495729 -----ATGGTATTGCAGAATACAAATCATGCTCTGGGCTCGCAgggttaaatcctggcccttccacttaccagctttgtgatgtcagggc------aactaact-----ttctgagt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      56193 101 -    811324 -----ATGGTATTGCAGAATACAAATCATGCTCTGGGCTTGCAgggttaaatcctggcccttccacttaccagctttgtgatgtcagggc------aactaact-----ttctgagc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30086721 101 -  71996105 -----ATGGTATTGCAGAATACAAATCATGCTCTGGGCTCGCAgggttaaatcctggcccttccacttaccagctttgtgatgtcagggc------aactaact-----ttctgagc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      93533 101 +    779361 -----ATGGTATTGCAGAATACAAATCATGCTCTGGGCTTGCAgggttaaatcctggcccttccacttaccagctttgtgatgtcagggc------aactaact-----ttctgagc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     756920 101 -   1829203 -----atggtattgcagaatataaatcatgctctgggctcccagggttaaatcctggcccttccacttaccagctttgtgatgtcagggc------aactaact-----ttctgagc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30917319 101 + 171630274 -----ATGGTATTGCAGAATACAAATCACGCTCTGAGCTGccaaggttaaatcttggcccctccacttactagctttgtgatatcaaggg------aattaact-----ttctgagt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            88403 101 -    750284 -----ATGGTATTGCAGAATACAAATCACATTCTGAGCTGccagggttaaatcttggcccctccacttaccagctttgtgatatcaaggc------aattaact-----ttctgagc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1336444  99 -   1771730 -----ATGGTATTGCAGAATACAAATCACGCTCTGAGCTGctagggttaaatcttggccccttcacttactag--ttgtgatatcaaggc------aattaact-----ttctgagc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      36176 101 -    566255 -----ATGGTATTGCAGAATACAAATCACACTCTGAGCTGccagggttaaatcttggcccctccacttaccagttttgtgatatcaaggc------aattaact-----ttctgagc
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     683663 106 -   1411461 -----ACAACATTGCAAATTATAaatcaggctctggactactagggttgaatcctggcctctccgcttaccagctttgtgacctcaaggc-gatttacttaact-----ttctgggc
i proCoq1.NW_012149775v1   I 5 C 0
s otoGar3.GL873550           700943 101 +  18854210 -----ataacattgcaaatgataaattaggctctggattaccagggttgaatcctggctgctccacttaccagctttgt------aaggcaaatttacttaact-----ttctgggt
i otoGar3.GL873550         I 295 C 0
s canFam3.chr12              377314 111 +  72498081 GTAGTATAACCTTGCAAGTTTCAAATcagactctgggctgccatgattgaatcctggccccttcacttatcaactctataacctcaaggc------aatttacttcacgttctgaga
i canFam3.chr12            C 0 C 0
e micMur3.chr6               652172 351 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e nomLeu3.chr1a            75336343 100 + 122973662 M

a score=282975.000000
s hg38.chr6_GL000254v2_alt  1891783 22 +   4827813 ctctg---tttcttcattttacagt-
s panTro5.chr6             30737442 22 + 175400573 ctctg---tttcttcattttacagt-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31161095 22 + 173848474 ctctg---tttcttcattttacagt-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     668068 22 +   2037526 ctctg---tttcttcattttacagt-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75336443 22 + 122973662 ctctg---tttcttcattttacagc-
i nomLeu3.chr1a            M 100 C 0
s rheMac8.chr4             31247864 22 + 172585720 ctctg---cttcttcattttacagc-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30536854 22 - 170955103 ctctg---cttcttcattttacagc-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     833185 22 +   1495729 ctctg---cttcttcattttacagc-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      56294 22 -    811324 ctctg---cttcttcattttacagc-
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30086822 22 -  71996105 ctctg---cttcttcattttacagt-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      93634 25 +    779361 ctctgcttcttcttcattttacagc-
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     757021 22 -   1829203 ctctg---cttcttcattttagagt-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30917420 21 + 171630274 ctctg---tttcttca-tttacagt-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            88504 22 -    750284 ctctg---tttcttcattttacagt-
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1336543 22 -   1771730 ctctg---gttcttcattttacagt-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      36277 22 -    566255 ctctg---tttcttcattttacagt-
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     683769 22 -   1411461 ctctg---tttcctcatcttacagt-
i proCoq1.NW_012149775v1   C 0 I 127
s otoGar3.GL873550           701044 22 +  18854210 ctctg---ttccctcattttacagt-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              377425 23 +  72498081 ctctg---tttcctcatttcacaagt
i canFam3.chr12            C 0 C 0
e micMur3.chr6               652172 351 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I

a score=1373663.000000
s hg38.chr6_GL000254v2_alt  1891805 121 +   4827813 gtggacacctccctacctcagggtggtcaggattaaatgagataaccaatacaacttgtgtgggtcagtgcctgcagtacagta---agtacccagtaCCAGTGATCCACATCTC---ATAATTACT
s panTro5.chr6             30737464 121 + 175400573 gtggacacctccctacctcagggtggtcaggattaaatgagataaccaatacaacttgtgtgggtcagtgcctgcagtacagta---agtacccagtaCCAGTGATCCACATCTC---ATAATTACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31161117 121 + 173848474 gtggacacctccctacctcagggtggtcaggattaaatgagataaccaatacaacttgtgtgggtcagtgcctgcagtacagta---agtacccagtaCCAGTGATCCACATCTC---ATAATTACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     668090 121 +   2037526 gtggacacctccctacctcagggtggtcaggattaaatgagataaccaatacaacttgtgtgggtcagtgcctgcagtacagta---agtacccagtaCCAGTGATCCACATCTC---ATAATTACT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75336465 121 + 122973662 gtggacacctccctacctcagggtggtcaggattaaatgagataaccaatacaacttgtgtgggtcagtgcctgcagtacagta---agtacccagtaCCAGTGATCCACATCTC---ATAATTACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31247886 121 + 172585720 gcagacacctccctaccttagggtggtcaggattaaatgagataaccaatacaacttgtgtgggtcagtgcctgcagtacagta---agtacccagtaCAAGTGATCCACATCTC---ATAATTACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30536876 121 - 170955103 gcagacacctccctaccttagggtggtcaggattaaatgagataaccaatacaacttgtgtgggtcagtgcctgcagtacagta---agtacccagtaCAAGTGATCCACATCTC---ATAATTACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     833207 121 +   1495729 gcagacacctccctaccttagggtggtcgggattaaatgagataaccaatacaacttgtgtgggtcagtgcctgcagtacagta---agtacccagtaCAAGTGATCCACATCTC---ATAATTACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      56316 121 -    811324 gcagacacctccctaccttagggtggtcaggattaaatgagataaccaatacaacttgtgtgggtcagtgcctgcagtacagta---agtacccagtaCCAGTGATCCACATCTC---ATAATTACC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30086844 121 -  71996105 gcagacacctccctaccttagggtggtcaggattaaatgagataaccaatacaacttgtgtgggtcagtgcctgcagtacagta---agtacccagtaCCAGTGATCCACATCTC---ATAATTACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      93659 121 +    779361 gcagacacctccctaccttagggcggtcaggattaaatgagataaccaatacaacttgtgtgggtcagtgcctgcagtacagta---agtacccagtaCCAGTGATCCACATCTC---ATAATTACC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     757043 121 -   1829203 acagacgcctccctaccttagggtggtcaggattaaatgagataaccaatacaacttgtgtgggtcagtgcctgcagtacagta---agtacccagtaCCAGTGATCCACATCTC---ATAATTACC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30917441 123 + 171630274 gtgtatacct-cctacttcagggtggtcaggattaaatgagataaccaaaaaatcttgtgtgggtcagtgcctgcagtacagta---agtacccagtaCCAGTGAGCCACATCTCATAATAATAATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            88526 126 -    750284 gtgtacgcct-cctacttcagggtggtcaggattaaatgaaataaccaataaaacttgcgtgggtcagtgcctgcagtacagtaagTAGTACCCAGTACCAGTGAGCCACATCTCATAATAATAATT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1336565 122 -   1771730 gtgtgcgcct-cctacttcagggcggtcaggattaaatgagataaccaataaaacttgcgtgggtcagtgcctgcagtacagt----agtacccagtaCCAGTGAGCCACATCTCataataataatt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      36299 123 -    566255 gtgtacacct-cctacttcagggtggtcaggattaaatgagataaccaataaaacttgtgtgggtcagtgcctgcagtacagta---agtacccagtaCCAGTGAGCCACATCTCataataataatt
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           701066 118 +  18854210 gca-atactt-cctacctcagagagatcaggattaaatgagataaccaatacaac-tgcctggaccagtgcctacagcagaata---agtgcccagtaCAAGTGATCCACATCTC---ATAATAACT
i otoGar3.GL873550         C 0 I 5
s canFam3.chr12              377448 117 +  72498081 gcagatacct-tcaagctcagagtggtccatattaagtgaaa-aacaaatagga-ttgcgtggttcagtgcctgcagtatatta---aatgcccaataTGTA-GACATGCAGCTC---ACAATCATT
i canFam3.chr12            C 0 C 0
e micMur3.chr6               652172 351 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683791 127 -   1411461 I

a score=201297.000000
s hg38.chr6_GL000254v2_alt  1891926 19 +   4827813 ATGACTTggcctggcacag
s panTro5.chr6             30737585 19 + 175400573 ATGACTTggcctggcacag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31161238 19 + 173848474 ATGACTTggcctggcacag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     668211 19 +   2037526 ATGACTTggcctggcacag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75336586 19 + 122973662 ATGACTTggcccggcacag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31248007 19 + 172585720 ATGACTTggcctggcacag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30536997 19 - 170955103 ATGACTTggcctggcacag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     833328 19 +   1495729 ATGACTTggcctggcacag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      56437 19 -    811324 ATGACTTggcctggcacag
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30086965 19 -  71996105 ATGACTTggcctggtacag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      93780 19 +    779361 ATGACTTggcctggcacag
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     757164 19 -   1829203 ATGACTTggcctggcacag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30917564 19 + 171630274 ATGACTTggctgggcacag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            88652 19 -    750284 ATGACTTggctgggcacgg
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1336687 19 -   1771730 atgacttggctgggcacag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      36422 19 -    566255 atgacttggctgggcacag
i aotNan1.NW_018511496v1   C 0 C 0
s canFam3.chr12              377565 19 +  72498081 GCAACTTCTCCAGGGAGAA
i canFam3.chr12            C 0 I 88
e micMur3.chr6               652172 351 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683791 127 -   1411461 I
e otoGar3.GL873550           701184  5 +  18854210 I

a score=2656785.000000
s hg38.chr6_GL000254v2_alt  1891945 282 +   4827813 tggctcacgcttgtaatcccagcgtgattactttgggaggccaaggcgggtggatcacctgaggtcaggacttcaagaccagcctggccaacatggtgaaa-ccccatctctactaaaaa-tacaaaaattagctgggcgtggtggtgggcgcctgtaattgcagctacttgggaggctgaggcaggagaaccacttgaacccaggaggcggaggttgcagtgagctgagattgcaccattgcactccagcctgggcaataagagggaaactc-catctcaaaa--a
s panTro5.chr6             30737604 283 + 175400573 tggctcacgcttgtaatcccagcgtgattactttgggaggccaaggcgggtggatcacctgaggtcaggacttcaagaccagcctggccaacatggtgaaa-ccccatctctactaaaaaatacaaaaattagctgggcgtggtggtgggcgcctgtaattgcagctacttgggaggctgaggcaggagaaccacttgaacccaggaggcggaggttgcagtgagctgagatcgcaccattgcactccagcctgggcaataagagggaaactc-catctcaaaa--a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31161257 283 + 173848474 tggctcacgcttgtaatcccagcgtgattactgtgggaggccaaggcgggtggatcacctgaggtcaggacttcaagaccagcctggccaacatggtgaaa-ccccatctctactaaaagatacaaaaattagctgggcgtggtggtgggcgcctgtaattgcagctacttgggaggctgaggcaggagaaccacttgaacccaggaggcggaggttgcagtgagctgagatcgcaccattgcactccagcctgggcaataagagggaaactc-catctcaaaa--a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     668230 282 +   2037526 tggctcacgcttgtaatcccagcgtgattactttgggaggccaaggcgggtggatcacctgaggtcaggacttcaagaccagcctggccaacatggtgaaa-ccccatctctactaaaaa-tacaaaaattagctgggcgtggtggtgggcgcctgtaattgcagctacttgggagactgaggcaggagaaccacttgaacccaggaggcggaggttgcagtgagctgagatcgcaccattgcactccagcctgggcaataagagggaaactc-catctcaaaa--a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75336605 276 + 122973662 tggctcacgcttgtaatcccagc------attttgggaggccaaggcgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaa-ccccatctctactaaaaa-tacaaaaattagctgggcgtggtggtggacgcctgtaatcgcagctacttgggaggctgaggcaggagaaccacttgaacccaggaggcggaggttgcagtgagccgagatcgcgccattgcactccagcctgggctacaagagggaaattc-catctcaaaa--a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31248026 277 + 172585720 tggctcacgcttgtaatcccagc------actctgggaagccaaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaa-tcccatctctactaaaaa-tacaaaaattagctgagtgtgctggtgggcacctgtaatcgcagctacttgggaggctgaggcaggagaaccacttgaacccaggaggcggaggttgcagtgagccgagattgcaccattgcactctagcctgggcaacaagagggaaactcttatcttgaaa--a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30537016 277 - 170955103 tggctcacgcttgtaatcccagc------actctgggaagccaaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaa-tcccatctctactaaaaa-tacaaaaattagctgagtgtgctggtgggcacctgtaatcgcagctacttgggaggctgaggcaggagaaccacttgaacccaggaggcggaggttgcagtgagccgagattgcaccattgcactctagcctgggcaacaagagggaaactcttatcttgaaa--a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     833347 277 +   1495729 tggctcacgcttgtaatcccagc------actctgggaagccacggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaa-tcccatctctactaaaaa-tacaaaaattagctgagtgtgctggtgggcacctgtaatcgcagctacttgggaggctgaggcaggagaaccacttgaacccaggaggcggaggttgcagtgagccgagattgcaccattgcactctagcctgggcaacaagagggaaactcttatcttgaaa--a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      56456 277 -    811324 tgactcacgcttataatcccagc------actctgggaagccaatgtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaa-tcccatctctactaaaaa-tacaaaaattagctgagtgtgctggtgggcacttgtaatcacagctacttgggaggctgaggcaggagaaccacttgaacccaggaggcggaggttgcagtgagccgagattgcaccattgtactctagcctgggcgacaagagggaaactcttaccttgaaa--a
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30086984 277 -  71996105 tggctcacgcttgtaatcccagc------actctgggaagccaaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaa-tcccatctccactaaaaa-tacaaaaattagctgagtgtgctggtgggcacctgtaatcgcagctacttgggaggctgaggcaggagaaccacttgaacccaggaggcggaggttgcagtgagctgagattgcaccattgcactctagcctgggcgacaagagggaaactcttatcttgaaa--a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      93799 277 +    779361 tgactcacgcttgtgatcccagc------actctgggaagccaatgtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaa-tcccatctctactaaaaa-tacaaaaattagctgagtgtgctggtgggcacttgtaatcacagctacttgggaggctgaggcaggagaaccacttgaacccaggaggcggaggttgcagtgagccgagattgcaccattgtactctagcctgggcgacaagagggaaactcttaccttgaaa--a
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     757183 277 -   1829203 tggctcacgcttgtaatctcagc------actctgggaagccaaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaa-tcccatctctactaaaaa-tacaaaaattagctgagtgtgctggtgggcacctgtaatcgcagctacttgggaggctgagacaggagaaccatttgaacccaggaggcggaggttgcagtgagccgagactgcaccactgcattccagcctgggcaacaagagggaaactcttatcttgaaa--a
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30917583 272 + 171630274 tggcttacacctgtaatctcagc------actttgggaggctgaggtgggcagattacctgaggtcaggagttcaagaccagcctggccaacatggtgaaacccccatctctactaaaaa-tacaaaaattagctgggcgtggtggcaggcgtctgtaatcgcagctacttgagaggctg----aggagaatcgcttgaacccaggaggcagaggttgtagtgagctgagatcatgccattgcactccagcctgggcaataagagcaaaacgc-tacctcaaaa---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            88671 275 -    750284 tggctcacgcctgtaatctcagc------actgtgggaggctgaggtgggtggattacctgaggtcaggagttcaagaccagcctggccaacatggtgaaa-ccccatctctactaaaaa-tacaaaaattagctgggggtggtggcaggcgtctgtaatcgcagctacttgagaggctgagacaggagaatcgcttgaacccaggaggcagaggctgtagtgagccaagatcatgcaattgcactccagcctgggcaacaagagcaaaacgc-catctcaaaa---
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1336706 276 -   1771730 tggcttacgcctgtaagctcagc------actttgggaggctgaggtgggtggattacctgaggtcaggagttcaagaccagcctgggcaacaaggtgaaa-ccccatctctactaaaaa-tacaaaaattagctgggcgtggtggcaggcgtctgtaattgcagctacctgagaggctgaggcaggagaatcacttgaacccaggaggcagagcctgtagtgagccgggatcatgccattgcactccagcctgggcaacaagagcaaaatgc-catctcaaaaa--
i cebCap1.NW_016107755v1   C 0 I 317
s aotNan1.NW_018511496v1      36441 272 -    566255 tggcttacgcctgtaatctcagc------actttgggaggctgaggtgggtggattacctgaggtcaggagttcaa-accagcctggccaacatggtgaaa-ccccatctctactaaaaa-tacaaaaattagctgggcgtggtggcaggcgtctgtaatcgcagctacttgagag---ggggcaggagaatcgcttgaacccaggaggcagaggttgtagtgagccgagatcatgccattgcactccagcctgggcaacaagagcaaaacac-catctcaaaa-a-
i aotNan1.NW_018511496v1   C 0 I 284
e micMur3.chr6               652172 351 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683791 127 -   1411461 I
e canFam3.chr12              377584  88 +  72498081 I
e otoGar3.GL873550           701184   5 +  18854210 I

a score=43633.000000
s hg38.chr6_GL000254v2_alt  1892227 13 +   4827813 ataataataataa---
s panTro5.chr6             30737887 13 + 175400573 aaaataataataa---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31161540 12 + 173848474 a-aaTAATAATAA---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     668512 13 +   2037526 aaaataataataa---
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75336881 12 + 122973662 a-aataataataa---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31248303 12 + 172585720 a-aaTAATAATAA---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30537293 12 - 170955103 a-aaTAATAATAA---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     833624 12 +   1495729 a-aataataataa---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      56733  9 -    811324 a----aataataa---
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30087261 12 -  71996105 a-aaTAATAATAA---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      94076  9 +    779361 a----aaTAATAA---
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     757460 12 -   1829203 a-aaTAATAATAA---
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30917855 13 + 171630274 ---aTAATAATTATTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            88946 13 -    750284 ---ataataaTTATTA
i saiBol1.JH378327         C 0 C 0
e micMur3.chr6               652172 351 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683791 127 -   1411461 I
e canFam3.chr12              377584 88 +  72498081 I
e otoGar3.GL873550           701184  5 +  18854210 I
e aotNan1.NW_018511496v1      36713 284 -    566255 I
e cebCap1.NW_016107755v1    1336982 317 -   1771730 I

a score=7847.000000
s hg38.chr6_GL000254v2_alt  1892240 1 +   4827813 T
s panTro5.chr6             30737900 1 + 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31161552 1 + 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     668525 1 +   2037526 T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75336893 1 + 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31248315 1 + 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30537305 1 - 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     833636 1 +   1495729 T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      56742 1 -    811324 T
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30087273 1 -  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      94085 1 +    779361 T
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     757472 1 -   1829203 T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30917868 1 + 171630274 T
i calJac3.chr4             C 0 I 302
s saiBol1.JH378327            88959 1 -    750284 T
i saiBol1.JH378327         C 0 I 312
s aotNan1.NW_018511496v1      36997 1 -    566255 C
i aotNan1.NW_018511496v1   I 284 C 0
e micMur3.chr6               652172 351 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683791 127 -   1411461 I
e canFam3.chr12              377584 88 +  72498081 I
e otoGar3.GL873550           701184 5 +  18854210 I
e cebCap1.NW_016107755v1    1336982 317 -   1771730 I

a score=25093.000000
s hg38.chr6_GL000254v2_alt  1892241 4 +   4827813 TACG
s panTro5.chr6             30737901 4 + 175400573 TACG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31161553 4 + 173848474 TACG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     668526 4 +   2037526 TATG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75336894 4 + 122973662 TACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31248316 4 + 172585720 TACG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30537306 4 - 170955103 TACG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     833637 4 +   1495729 TACG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      56743 4 -    811324 TACG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30087274 4 -  71996105 TACG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      94086 4 +    779361 TACG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     757473 4 -   1829203 TACG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30918171 4 + 171630274 TATT
i calJac3.chr4             I 302 C 0
s saiBol1.JH378327            89272 4 -    750284 TATT
i saiBol1.JH378327         I 312 C 0
s aotNan1.NW_018511496v1      36998 4 -    566255 TATT
i aotNan1.NW_018511496v1   C 0 C 0
e micMur3.chr6               652172 351 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683791 127 -   1411461 I
e canFam3.chr12              377584 88 +  72498081 I
e otoGar3.GL873550           701184 5 +  18854210 I
e cebCap1.NW_016107755v1    1336982 317 -   1771730 I

a score=125520.000000
s hg38.chr6_GL000254v2_alt  1892245 11 +   4827813 ATGACTTGTCC
s panTro5.chr6             30737905 11 + 175400573 ATGACTTGTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31161557 11 + 173848474 ATGACTTGTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     668530 11 +   2037526 ATGACTTGTCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75336898 11 + 122973662 ATGACTTGTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31248320 11 + 172585720 ATGACTTGTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30537310 11 - 170955103 ATGACTTGTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     833641 11 +   1495729 ATGACTTGTCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      56747 11 -    811324 ATGACTTGTCC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30087278 11 -  71996105 ATGACTTGTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      94090 11 +    779361 ATGACTTGTCC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     757477 11 -   1829203 ATGACTTGTCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30918175 11 + 171630274 ATGACTTGTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            89276 11 -    750284 ATGACTTGTCC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1337299 11 -   1771730 ATGACTTGTCC
i cebCap1.NW_016107755v1   I 317 C 0
s aotNan1.NW_018511496v1      37002 11 -    566255 ATGACTTGTCC
i aotNan1.NW_018511496v1   C 0 C 0
e micMur3.chr6               652172 351 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683791 127 -   1411461 I
e canFam3.chr12              377584 88 +  72498081 I
e otoGar3.GL873550           701184  5 +  18854210 I

a score=15003.000000
s hg38.chr6_GL000254v2_alt  1892256 2 +   4827813 AA
s panTro5.chr6             30737916 2 + 175400573 AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31161568 2 + 173848474 AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     668541 2 +   2037526 AA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75336909 2 + 122973662 AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31248331 2 + 172585720 AG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30537321 2 - 170955103 AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     833652 2 +   1495729 AG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      56758 2 -    811324 AG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30087289 2 -  71996105 AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      94101 2 +    779361 AG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     757488 2 -   1829203 AG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30918186 2 + 171630274 AA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            89287 2 -    750284 AA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1337310 2 -   1771730 AA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      37013 2 -    566255 TA
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     683918 2 -   1411461 AA
i proCoq1.NW_012149775v1   I 127 C 0
s otoGar3.GL873550           701189 2 +  18854210 AA
i otoGar3.GL873550         I 5 C 0
e micMur3.chr6               652172 351 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e canFam3.chr12              377584 88 +  72498081 I

a score=131823.000000
s hg38.chr6_GL000254v2_alt  1892258 12 +   4827813 GGAGAAAACTGG
s panTro5.chr6             30737918 12 + 175400573 GGAGAAAACTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31161570 12 + 173848474 GGAGAAAACTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     668543 12 +   2037526 GGAGAAAACTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75336911 12 + 122973662 GGAGAAAACTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31248333 12 + 172585720 GGAGGAAACTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30537323 12 - 170955103 GGAGGAAACTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     833654 12 +   1495729 GGAGGAAACTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      56760 12 -    811324 GGAGGAAACTGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30087291 12 -  71996105 GGAGGAAACTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      94103 12 +    779361 GGAGGAAACTGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     757490 12 -   1829203 GGAGAAAACTGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30918188  9 + 171630274 GGAG---ACTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            89289  9 -    750284 GGAG---ACTGA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1337312  9 -   1771730 GGAG---ACTGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      37015  9 -    566255 GGAG---ACTGA
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               652523 12 + 123392446 GGAGAAAACTGG
i micMur3.chr6             I 351 C 0
s proCoq1.NW_012149775v1     683920 12 -   1411461 GGAGAAAACTGG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           701191 12 +  18854210 GAAGAAAACTGG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58999825 3677 -  94987271 I
e canFam3.chr12              377584 88 +  72498081 I

a score=322057.000000
s hg38.chr6_GL000254v2_alt  1892270 24 +   4827813 AAGC-CTTGGGGCTCACTGCCACTC
s panTro5.chr6             30737930 24 + 175400573 AAGC-CTTGGGGCTCACTGCCACTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31161582 24 + 173848474 AAGC-CTTGGGGCTCACTGCCACTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     668555 24 +   2037526 AAGC-CTTGGGGCTCACTGCCACTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75336923 24 + 122973662 AAGC-CTTGGGGCTCACTGGCACTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31248345 24 + 172585720 AAGC-CTTGGGACTCACTGCCACTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30537335 24 - 170955103 AAGC-CTTGGGACTCACTGCCACTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     833666 24 +   1495729 AAGC-CTTGGGACTCACTGCCACTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      56772 24 -    811324 AAGC-CTTGGGACTCACTGCCACTC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30087303 24 -  71996105 AAGC-CTTGGGACTCACTGCCACTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      94115 24 +    779361 AAGC-CTTGGGACTCACTGCCACTC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     757502 24 -   1829203 AAGC-CTTGGGACTCACTGCCACTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30918197 24 + 171630274 AAGC-CTTGGGGTTCAATGCCACTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            89298 24 -    750284 AGGC-TTTGGGGCTCAATGCTGCTC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1337321 24 -   1771730 AGGC-CTTGGGGCTCAATGCCACTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      37024 24 -    566255 AAGC-CTTGGGGCTCAATGCCACTC
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               652535 24 + 123392446 AAGC-CTTGGAGCTCACCGCAACTC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     683932 24 -   1411461 AAGC-CTCGGGGCTCGCTGCAACTC
i proCoq1.NW_012149775v1   C 0 I 1518
s otoGar3.GL873550           701203 24 +  18854210 AAAC-TATGGAGCTCACTACAACTC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              377672 15 +  72498081 aagcacttgggcctc----------
i canFam3.chr12            I 88 C 0
e mm10.chr17               58999825 3677 -  94987271 I

a score=1203165.000000
s hg38.chr6_GL000254v2_alt  1892294 116 +   4827813 TGCTCACTCACCACCACCAGTTTTTGTGTTTctggctgacttcagtgccttcatctcccttccacagagcatctcctttaccccacctcagctgcccactcccatggtaatac-ctg
s panTro5.chr6             30737954 116 + 175400573 TGCTCACTCACCACCACCAGTTTTTGTGTTTctggctgacttcagtgccttcatctcccttccacagagcatctcccttaccccacctcagctgcccactcccatggtaatac-ctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31161606 116 + 173848474 TGCTCACTCACCACCACCAGTTTTTGTGTTTctggctgacttcagtgccttcatctcccttccacagagcatctcctttaccccacctcagctgcccactcccatggtaatac-ctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     668579 116 +   2037526 TGCTCACTCACCACTACCAGTTTTTGTGTTTctggctgacttcagtgccttcatctcccttccacagagcatctcctttaccccacctcagctgcccactcccatggtaatac-ctg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75336947 115 + 122973662 TGCTCAC-AACCACTACCAGTTTTTGTGTTTctggctgacttcactgccttcatctcccttccacagagcatctcctttaccccacctcagctgcccactcccatggtaatac-ttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31248369 115 + 172585720 TGCTCAA-AACCACTACCAGTTTTTGTATTTctggctgacttcagtgcctttatctcccttccacaaagcatctcatttaccccacctcagctgcccattcccgtggtaatac-ctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30537359 115 - 170955103 TGCTCAA-AACCACTACCAGTTTTTGTATTTctggctgacttcagtgcctttatctcccttccacaaagcatctcatttaccccacctcagctgcccattcccgtggtaatac-ctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     833690 115 +   1495729 TGCTCAA-AACCACTACCAGTTTTTGTATTTctggctgacttcagtgcctttatctcccttccacaaagcatctcatttaccccacctcagctgcccattcccgtggtaatac-ctg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      56796 115 -    811324 TGCTCAA-AACCACTACCAGTTTTTGTATTTctggctgacttcagtgcctttatctcccttccacagagcatctcatttaccccacctcagctgcccattcccgtggtaatac-ctg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30087327 115 -  71996105 TGCTCAA-AACCACTACCAGTTTTTGTATTTctggctgacttcagtgcctttatctcccttctacagagcatctcatttaccccacctcagctgcccattcccgtggtaatac-ctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      94139 115 +    779361 TGCTCAA-AACCACTACCAGTTTTTGTATTTctggctgacttcagtgcctttatctcccttccacagagcatctcatttaccccacctcagctgcccattcccgtggtaatac-ctg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     757526 115 -   1829203 TGCTCAA-AACCACTACCAGTTTTTGTATTcctggctgacttcaatgcctttatctcccttccacagagcatctcctttaccccacctcagatgcccattcccgtggtaatac-ctg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30918221 111 + 171630274 TGTTCAC-AACCACCACCATCTTC----CTTctggctgacttcagtgccttcatctcacttccagagagcatctcctttactccacctcagctgtccactcccatggtaatac-ctg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            89322 111 -    750284 TGCTCAC-AACCACCACCATCTTC----CTTctggctgatttcagtgccttcatctcacttccacagagcatctcctttaccccacctcagccgtccactcccgtggtaatac-ctg
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1337345 111 -   1771730 TGCTCAC-AACCACCACCATCTTC----CTTctggctgacttcagtgccttcatctcacttccacagagcatctccttcaccccaccacagctgcccactcccatggtaacac-ctg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      37048 111 -    566255 TGCTCAC-AACCACCACCATCTTC----CTTctggctgacttcagtgcctttatctcacttccacagagcatctcctttaccccacctcagctgtccacacccatggtaatac-ctg
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               652559 111 + 123392446 TGTTCAT-GACCATCACCACCTtc----cttctgactgacttcagtgcctgcatcccactgccaaagaatgtctccttaaccccacctcagctgcccactcccatgggaatac-ctg
i micMur3.chr6             C 0 I 354
s otoGar3.GL873550           701227  67 +  18854210 TGTTCAT-GG---------------------------GACTTCAGTACCTGCCTCACACTTCCAAAGATCGTCCtttt--------------------tttctgagacagtat-ct-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              377687  65 +  72498081 -----------------------------------------ccagtgccagcatccgtcttccgaaggttatttc-----------ctcaactacccactgccttggtcatactctg
i canFam3.chr12            C 0 C 0
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683956 1518 -   1411461 I

a score=145943.000000
s hg38.chr6_GL000254v2_alt  1892410 11 +   4827813 catcttgtcac
s panTro5.chr6             30738070 11 + 175400573 catcttgtcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31161722 11 + 173848474 catcttgtcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     668695 11 +   2037526 catcttgtcac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75337062 11 + 122973662 catcttgtcac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31248484 11 + 172585720 catcttgtcac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30537474 11 - 170955103 catcttgtcac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     833805 11 +   1495729 catcttgtcac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      56911 11 -    811324 catcttgtcac
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30087442 11 -  71996105 catctcgtcac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      94254 11 +    779361 catcttgtcac
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     757641 11 -   1829203 catcttgtcac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30918332 11 + 171630274 catcttgtcac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            89433 11 -    750284 catcctgtcac
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1337456 11 -   1771730 catcctgtcac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      37159 11 -    566255 catcttgtcac
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           701294 11 +  18854210 cactttgtcac
i otoGar3.GL873550         C 0 I 157
s canFam3.chr12              377752 11 +  72498081 gatcttgtcac
i canFam3.chr12            C 0 C 0
e micMur3.chr6               652670 354 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683956 1518 -   1411461 I

a score=2722215.000000
s hg38.chr6_GL000254v2_alt  1892421 251 +   4827813 ttcacagctccaaagcctcaattccaagcacccctctctgccctgacaactcatctttccagctcacttactctggttactccatgccagtaagtctttgacc---cctgaccttaacacagtaacactatgcaatacccaactcgtgtcctcaatttccttcttacttgactcagatttcatgatccagctcctcagccaggcccgttcacagacctggaactccctggtcccacttctcccctctatctta--c
s panTro5.chr6             30738081 251 + 175400573 ttcacagctccaaagcctcaattccaagcacccctctctgccctgacaactcatctttccagctcacttactctggttactccattccagtaagtctttgacc---cctgaccttaacacagtaacactatgcaatacccaactcatgtcctcaatttccttcttacttgactcagatttcatgatccagctcctcagccaggcccgttcacagacctggaactccctggtcccacctctcctctctatctta--c
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31161733 251 + 173848474 ttcacagctccaaagcctcaattccaagcacccctctctgccctgacaactcatctttccagctcacttactctggttactccattccagtaagtctttgacc---cctgaccttaacacagtaacactatgcaatacccaactcgtgtcctcaatttccttcttacttgactcagatttcatgatccagctcctcagccaggcccgttcacagacctggaactccctggtcccacctctcctctctatctta--c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     668706 250 +   2037526 ttcacagctccaaagcctcaattccaagcacccctctctgccctgacaacccatctttccagctcacttactctggttactccattccagtaagtctttga-c---cctgaccttaacacagtaacactatgcaatacccaacacgtgtcctcaatttccttcttacttgactcagatttcatgatccagctcctcagccaggcccgttcacagacctggaactccctggtcctacctctcccctctatctca--c
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75337073 251 + 122973662 ttcacagctccaaagtctcaattccaagcacccctctctgccctgacaactcatctttccagctcacttactctggttactccattccagtaagtctttgacc---cctgaccttaacacagtaacactatgcaacacccaactcatgtcctcaatttccttcttacttgactcagatttcatgatccagctcctcagccaggcccgttcacagacctggaactccctggtcccacctctcccctctatctta--c
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31248495 251 + 172585720 ttcacagctccaaagcctcaattccaagcaaccctctctgccctgacaactcatctttccagctcacttactctggttcctccattccagtaagtctttgacc---cctgaccttaacacagtaacactatgcaatatccaactcgtgtcctcaattttcttcttacttgactcagatttcatgatccagctcctcagccaggcctgttcagaaacctggaactccctggtcccacctctcccctctatctta--c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30537485 251 - 170955103 ttcacagctccaaagcctcaattccaagcaaccctctctgccctaacaactcatctttccagctcacttactctggttcctccattccagtaagtctttgacc---cctgaccttaacacagtaacactatgcaatatccaactcgtgtcctcaattttcttcttacttgactcagatttcatgatccagctcctcagccaggcctgttcagaaacctggaactccctggtcccacctctcccctctatctta--c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     833816 251 +   1495729 ttcacagctccaaagcctcaattccaagcaaccctctctgccctgacaactcatctttccagctcacttactctggttcctccattccagtaagtctttgacc---cctgaccttaacacagtaacactatgcaatatccaactcgtgtcctcaattttcttcttacttgactcagatttcatgatccagctcctcagccaggcctgttcagaaacctggaactccctggtcccacctctcccctctatctta--c
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      56922 251 -    811324 ttcacagctccaaagcctcaattccaagcaaccctctctgccctgacaactcatctttccagctcacttactctggttcctccattccagtaagtctttgacc---cctgaccttaacacagtaacactatgcaatatccaactcgtgtcctcaattttcttcttacttgactcagatttcatgatccagctcctcagccaggcctgttcagaaatctggaactccctggtcccacctctcccctctatctta--c
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30087453 251 -  71996105 ttcacagctccaaagcctcaattccaagcaactctctctgccctgacaactcatctttccagctcacttactctggttcctccattccagtaagtctttgacc---cctgaccttaacacagtaacactatgcaatatccaactcgtgtcctcaattttcttcttacttaactcagatttcatgatccagctcctcagccaggcccgttcagaaacctggaactccctggtcccacctctcccctctatctta--c
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      94265 251 +    779361 ttcacagctccaaagcctcaattccaagcaaccctctctgccctgacaactcatctttccagctcacttactctggttcctccattccagtaagtctttgact---cctgaccttaacacagtaacactatgcaatatccaactcgtgtcctcaattttcttcttacttgactcagatttcatgatccagctcctcagccaggcctgttcagaaatctggaactccctggtcccacctctcccctctatctta--c
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     757652 251 -   1829203 ttcacagctccaaagcctcaattccaagcacccctctctgccctgacaactcatctttccagctcacttactctggttcctccattccagtaagtccttgacc---cctgaccttaacacagtaacactatgcaatacccaactcgtgtcctcaattttcttcttacttgactcagatttcatgatccagctcctcagccaggcccgttcagaaacctggaactccctggtcccacctctcccctctatttta--c
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30918343 250 + 171630274 ttcacagctccaaagcctcaatttcaagcacctctctctgccctgacaacccatctttccagcaaacttattctggttcctccattccagtaagtctttgacc---cctgaccttatcagagaaacactatgcaatacccaactcatgtcctcaatt---ttcttaactgactcagatttcgtgatccagctccatagccaggcccattcacagacctggaactccctagtcccacctctcccctctatcttaccc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            89444 249 -    750284 ttcacagctccaaagcctcaacttcaagc-cccctctctgccctgacaacccat-tttccagcaaacttattctggttcctccattccagtaagtctttgacc---cctgaccttagcagagaaacactatgcaatacccaactcatgtcctcaattttcttcttaactgactcagatttcatgatccagctccacagccaggcccattcacagaactggagctccctagtcccacctctcccctctatctta--c
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1337467 251 -   1771730 ttcacagctccaaagcctcaacatcaagcacccctctctgccctgacaacccatctttccagcaaacttattctggttcctccatcccagtaagtctttgacc---cctgaccttagcagagaaacactatgcaatacccaactaatgtcctcaattttcttcttaactgactcagatttcatgatccaggtccatagccaggcccattcacagacctggaactccctaatcccacctctcccctctatctta--c
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      37170 251 -    566255 ttcacagctccaaagcctcaacttcaagcacccctctctgacctgacaacccatctttccagcaaacttattctggttcctccattccagtaagtctttgatc---cctgaccttagcagagaaacactacgcaatatccaactcatgtcctcaattttcttcttaactgactcagatttcatgatccagctccatagccaggcccattcacagacatggaactccctagtcccacctctcccctctatctta--c
i aotNan1.NW_018511496v1   C 0 C 0
s canFam3.chr12              377763 240 +  72498081 ttcacacctccaaaatctcaaccacaagcaccactctctgctgtgaca--------tcccagctcactttttct-gttcttcgattctgattactctttgaccctgcctctcgttaggaca-----actactccatactggactcatgtcctcacttcctttctataccaaccaagacaccatgacccagctctacagccaccccctttcacagaccttgaactcccaagtcctgtccgtctcctcaatctta--c
i canFam3.chr12            C 0 C 0
e micMur3.chr6               652670 354 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683956 1518 -   1411461 I
e otoGar3.GL873550           701305 157 +  18854210 I

a score=99376.000000
s hg38.chr6_GL000254v2_alt  1892672 12 +   4827813 tcacctggc-aaa
s panTro5.chr6             30738332 12 + 175400573 tcacctggc-aaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31161984 12 + 173848474 tcacctggc-aaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     668956 12 +   2037526 tcacctggc-aaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75337324 12 + 122973662 tcacctggc-aaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31248746 13 + 172585720 tcacctggcaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30537736 13 - 170955103 tcacctagcaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     834067 13 +   1495729 tcacctggcaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      57173 13 -    811324 tcacctggcaaaa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30087704 13 -  71996105 tcacctggcaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      94516 13 +    779361 tcacctggcaaaa
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     757903 13 -   1829203 tcacctggcaaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30918593 12 + 171630274 ccacctcgc-aaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            89693 12 -    750284 ccatctggc-aaa
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1337718 12 -   1771730 ccacctggc-aaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      37421 12 -    566255 ccacctggc-aaa
i aotNan1.NW_018511496v1   C 0 C 0
e micMur3.chr6               652670 354 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683956 1518 -   1411461 I
e canFam3.chr12              378003  0 +  72498081 C
e otoGar3.GL873550           701305 157 +  18854210 I

a score=1153280.000000
s hg38.chr6_GL000254v2_alt  1892684 118 +   4827813 atcccaaccctgtaaaatccagctctgcccattcagca-ctgctcctgggcagctgactgtggctaagaaaagatgtaccactgtgctcact------CTTTACAACACATGCAAG-----TATCTAgga
s panTro5.chr6             30738344 118 + 175400573 atcccaaccctgtaaaatccagctctgcccattcagca-ctgctcctgggcagctgactgtggctaagaaaagatgtaccactgtgctcact------CTTTACAACACATGCAAG-----TATCTAgga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31161996 118 + 173848474 atcccaaccctgtaaaatccagctctgcccattcagca-ctgctcctgggcagctgactgtggctaagaaaagatgtaccactgtgctcact------CTTTACAACACATGCAAG-----TATCTAgga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     668968 118 +   2037526 atcccaaccctgtaaaatccagctctgcccattcagca-ctgctcctgggcagctgactgtggctaagaaaagatgtaccactgtgctcact------CTTTACAACACATGCAAG-----TATCTAgga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75337336 118 + 122973662 aacccaaccctgtaaaatccagctctgcccattcagca-ctgctcctgggcagctgactgtggctaagaaaagatgtaccactgtgctcact------ctttacaacacatggaag-----tatctagga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31248759 118 + 172585720 atcccaaccctataaaatccagttctgcccattcagca-ctgctcctggggagctgactgtggctaagaaaagatgtaccactgtgctCAAT------CTTTACAACACGTGGAAG-----TATCTAgga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30537749 118 - 170955103 atcccaaccctataaaatccagttctgcccattcagca-ctgctcctggggagctgactgtggctaagaaaagatgtaccactgtgctCAAT------CTTTACAACACGTGGAAG-----TATCTAgga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     834080 118 +   1495729 atcccaaccctataaaatccagttctgcccattcagca-ctgctcctggggagctgactgtggctaagaaaagatgtaccactgtgctCAAT------CTTTACAACACGTGGAAG-----TATCTAgga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      57186 118 -    811324 atcccaaccctataaaatccagttctgcccattcagca-ccgctcctggggagctgactgtggctaagaaaagatgtaccactgtgctCAAT------CTTTACAACACATAGAAG-----TATCTAgga
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30087717 118 -  71996105 atcccaaccctataaaatccagttctgcccattcagcc-ctgctcctggggagctgactgtggctaagaaaagatgtaccactgtgctCAAT------CTTTACAACACATGGAAG-----TATCTAgga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      94529 118 +    779361 atcccaaccctataaaatccagttctgcccattcagca-ccgctcctggggagctgactgtggctaagaaaagatgtaccactgtgctCAAT------CTTTACAACACATAGAAG-----TATCTAGGA
i manLeu1.NW_012106264v1   C 0 M 1435
s colAng1.NW_012115577v1     757916 118 -   1829203 atcccaaccctataaaatccagttctgcccattcaaca-ctgctcctggggagctgactgtggctaagaaaagatgtaccactgtgctCAAT------CTTTACAACACATGGAAG-----TATCTAgga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30918605 125 + 171630274 atcccaaccctgtaaaatccaactctgtccattcagcacctgctcctgggcagctgactgtggctcagaaaagatgtaccactgtgctgactgcacccctttacaacacatgGAAG-----TATCTAGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            89705 125 -    750284 gtcccaaccctgtaaaatccaactctgtccattgagcacctgctcctgggcagctgactgtggctgagaaaagatataccactttgctgactgcacccctttacaacacatgGAAG-----TATCTAGGA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1337730 125 -   1771730 atcccaaccctgtaaaattcaactctgtccactgagcacctgctcctgggcgactgactgtggctgagaaaagatgtaccactgtactgactgcacccctttacaacacatgGAAG-----TATCTAGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      37433 130 -    566255 atcccaaccctgtaaaatccaactctgtccattcagcacctgctcctgggcagctgactgtggctgagaaaagatgtaccactgtgctgactgcacccctttacaacacatgGAAGTAGATTATCTAGGA
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           701462  72 +  18854210 gtctcaaacctgta------agctcaggcaatcca----ctgcctc-----agcc---------------------tcccagagtgctaggt--------ttacagcaagagcaaa--------------
i otoGar3.GL873550         I 157 C 0
e micMur3.chr6               652670 354 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683956 1518 -   1411461 I
e canFam3.chr12              378003   0 +  72498081 C

a score=60063.000000
s hg38.chr6_GL000254v2_alt  1892802  9 +   4827813 ggaa----gggag
s panTro5.chr6             30738462  9 + 175400573 ggaa----gggag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31162114  9 + 173848474 ggaa----gggag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     669086  9 +   2037526 ggaa----gggag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75337454  9 + 122973662 ggaa----gggag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31248877  9 + 172585720 ggga----gagag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30537867  9 - 170955103 ggga----gagag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     834198  9 +   1495729 ggga----gagag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      57304  9 -    811324 ggga----gagag
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30087835  9 -  71996105 ggga----gagag
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     758034  9 -   1829203 ggga----gagac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30918730  9 + 171630274 AGAA----GGGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            89830  9 -    750284 AGAA----GGGAG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1337855  9 -   1771730 AGAA----GGGAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      37563 13 -    566255 AGAAGGGTGGGAA
i aotNan1.NW_018511496v1   C 0 C 0
e micMur3.chr6               652670 354 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683956 1518 -   1411461 I
e canFam3.chr12              378003  0 +  72498081 C
e otoGar3.GL873550           701534  0 +  18854210 C
e manLeu1.NW_012106264v1      94647 1435 +    779361 M

a score=1303284.000000
s hg38.chr6_GL000254v2_alt  1892811 146 +   4827813 ggaaggagggagAAaaaagttctcctttgacgaccaccaccagacctagttctctgtccgctttgcaggaaaactccttaaaagacttacctac-ttttttcaccatttcttcctgctatcttctttgtaacTGTAAACTA-CAACAT
s panTro5.chr6             30738471 146 + 175400573 ggaaggagggaaaaaaaagttctcctttgacgaccaccaccagacctagttctctgtccactttgcaggaaaactccttaaaagacttacctac-ttttttcaccatttcttcctgctatcttctttgtaacTGTAAACTA-CAACAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31162123 146 + 173848474 ggaaggagggagAAaaaagttctcctttgacgaccgccaccagacctagttctctgtccgctttgcaggaaaactccttaaaagacttacctac-ttttttcaccatttcttcctgctatcttctttgtaactgtaaacta-caacat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     669095 146 +   2037526 ggaaggagggagAAaaaagttctcctttgacgaccaccaccagacctagttctctgtccgctttgcaggaaaactccttaaaagacttacctac-ttttttcaccatttcttcctgctatcttctttgtaacTGTAAACTA-CAACAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75337463 146 + 122973662 ggaaggagggagaaaaaagttctcctttaatgaccaccaccagacctgtttctctgtccgctttgtaggaaaactccttaaaagacttatctac-ttttttcaccacttcttcctgctatcttctttgtaactgtaaacta-taacat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31248886 144 + 172585720 ggaaggagggagAGaaaagttctcctttgacgaccaccaccagacccatttctctgttcgctttgcaggaaaactccttaaaagacttagctac---ttttcaccacttcttcctgctatcttctttGTAACTGTAAACTA-TAATAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30537876 144 - 170955103 ggaaggagggagAGaaaagttctcctttgacgaccaccaccagacccatttctctgttcgctttgcaggaaaactccttaaaagacttagctac---ttttcaccacttcttcctgctatcttctttGTAACTGTAAACTA-TAATAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     834207 144 +   1495729 ggaaggagggagAGaaaagttctcctttgacgaccaccaccagacccatttctctgttcgctttgcaggaaaactccttaaaagacttagctac---ttttcaccacttcttcctgctatcttctttgtaacTGTAAACTA-TAATAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      57313 144 -    811324 ggaaggagggagAAaaaagttctcctttgatgaccaccaccagacccatttctctgtccgctttgcaggaaaactccttaaaagacttagctac---tttccaccacttcttcctgctatcttctttgtaacTGTAAACTA-TAACAT
i cerAty1.NW_012002513v1   C 0 I 320
s chlSab2.chr17            30087844 144 -  71996105 ggaaggagggagAAaaaagttctcctttgacgaccaccaccagacccatttctctgtccgctttgcaggaaaactccttaaaagacttagctac---ttttcaccacttcttcCTGCTATCTTctttgtaactgtaaacta-taacat
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     758043 144 -   1829203 ggaaggagggagAAaaaagttctcctttgacgaccaccaccagacccatttctctgtccgctttgcaggaaaactccttaaaagacttagctac---ttttcaccacttcttcctgctatcttctttGTAACTGTAAACTA-TAACAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30918739 147 + 171630274 GGAAGGAGGGAGAAAACAGTTCTCCTTTGACAACAATCACCAGACCCATTTCTCTG-ATACTTTGTAAGAAAACCCCTTAAAAGACGCATCTACTTTTTTTCACCACTTCTTCATACTATCTTCTTTGTAACTGTAAACTGTTAACAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            89839 147 -    750284 GGAATGAGGGAGAAAAcagttctcctttaacaacaatcaccagacccatttctctgtccactttgtaagaaaactccttaaaagacttatctaccttttttcaccacttcttcatactatcttctttgtaacTGTAAACTG-TAACAC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1337864 147 -   1771730 GGAATGAGGGAGAAAAcagttctcctttaacaacaatcaccagacccatttctctgtccactttgcaagaaaactccttaaaagactcatctactttttttcactacttcttcatactattgtctttgtaacTGTTAATTG-TAACGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      37576 147 -    566255 GGAAGGAGGGagaaaacagttctcctttgacaacaatcaccagacccatttctctgtccactttgtaagaaaactccttaaaagactcatctactttttttcaccacttcttcATATTATCTTCTTTGTAACTGTAAACTG-TAACAC
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               653024 147 + 123392446 GGAGGGAGGGagaaaacaattctcctttgacaactcccaccagccccatttctctgtcccctttataggaaaactctttaaaagatttatctatcctttatcatcacttcttcatgccaccttctttGTGAGTGTAAACTT-TAACAC
i micMur3.chr6             I 354 C 0
s otoGar3.GL873550           701534  76 +  18854210 -----------------------------------cacgcccggACC-------------------------------CAAAAAGTGTCttctttttttgagatagtctcattatgtcaccctcggtac-agtg----ctg-tggcat
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683956 1518 -   1411461 I
e canFam3.chr12              378003   0 +  72498081 C
e manLeu1.NW_012106264v1      94647 1435 +    779361 M

a score=16578.000000
s hg38.chr6_GL000254v2_alt  1892957 2 +   4827813 AC
s panTro5.chr6             30738617 2 + 175400573 AC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31162269 2 + 173848474 ac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     669241 2 +   2037526 AC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75337609 2 + 122973662 ac
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             31249030 2 + 172585720 AC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30538020 2 - 170955103 AC
i macFas5.chr4             C 0 I 338
s macNem1.NW_012012100v1     834351 2 +   1495729 AC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      57777 2 -    811324 ac
i cerAty1.NW_012002513v1   I 320 I 1
s chlSab2.chr17            30087988 2 -  71996105 ac
i chlSab2.chr17            C 0 I 309
s colAng1.NW_012115577v1     758187 2 -   1829203 AC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30918886 2 + 171630274 AT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            89986 2 -    750284 AT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1338011 2 -   1771730 AT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      37723 2 -    566255 AT
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               653171 2 + 123392446 AC
i micMur3.chr6             C 0 C 0
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683956 1518 -   1411461 I
e canFam3.chr12              378003 0 +  72498081 C
e otoGar3.GL873550           701610 0 +  18854210 C
e manLeu1.NW_012106264v1      94647 1435 +    779361 M

a score=25517.000000
s hg38.chr6_GL000254v2_alt  1892959  8 +   4827813 ------AAAAAAAT
s panTro5.chr6             30738619  8 + 175400573 ------AAAAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31162271  8 + 173848474 ------aaaaaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     669243  8 +   2037526 ------CAAAAAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75337612  8 + 122973662 ------aaaaaaat
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             31249032  8 + 172585720 ------ACAAAAAT
i rheMac8.chr4             C 0 I 317
s macFas5.chr4             30538360  7 - 170955103 ------aaaaaaa-
i macFas5.chr4             I 338 C 0
s macNem1.NW_012012100v1     834353  8 +   1495729 ------ACAAAAAT
i macNem1.NW_012012100v1   C 0 I 296
s cerAty1.NW_012002513v1      57780  7 -    811324 ------aaaaaaa-
i cerAty1.NW_012002513v1   I 1 C 0
s chlSab2.chr17            30088299  8 -  71996105 ------aaaaaaat
i chlSab2.chr17            I 309 C 0
s colAng1.NW_012115577v1     758189  8 -   1829203 ------ACAAAAAT
i colAng1.NW_012115577v1   C 0 I 315
s calJac3.chr4             30918888  8 + 171630274 ------ACAAAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            89988  8 -    750284 ------ACAAAAAC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1338013  8 -   1771730 ------ACAAAAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      37725  8 -    566255 ------ACAAAAAT
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               653173 11 + 123392446 ACACACAAAAT---
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           701610  6 +  18854210 -----cacagc---
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683956 1518 -   1411461 I
e canFam3.chr12              378003  0 +  72498081 C
e manLeu1.NW_012106264v1      94647 1435 +    779361 M

a score=405141.000000
s hg38.chr6_GL000254v2_alt  1892967 44 +   4827813 GCACAGAA----CATACATGTGCAGCCTGATGA-------ACCCCATACCACCCA
s panTro5.chr6             30738627 43 + 175400573 GCACAGAA----CATACACGTGCAGCCTGATGA-------ACCC-ATACCACCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31162279 43 + 173848474 gcacagaa----catacacgtgcagcctgatga-------aCCC-ATACCACCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     669251 44 +   2037526 GCACAGAA----CATACATGTGCAGCCTGATGA-------ACCCCATACCACCCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75337620 44 + 122973662 gcacagaa----catacatgtgcagcctgatga-------gccccataccaccca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31249357 44 + 172585720 GCACAGAA----CATACATGTGCAGCCTGATGA-------ACCCGACACCACTCA
i rheMac8.chr4             I 317 C 0
s macFas5.chr4             30538367 44 - 170955103 GCACAGAA----CATACATGTGCAGCCTGATGA-------ACCCGACACCACTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     834657 44 +   1495729 GCACAGAA----CATACATGTGCAGCCTGATGA-------ACCCGACACCACTCA
i macNem1.NW_012012100v1   I 296 C 0
s cerAty1.NW_012002513v1      57787 44 -    811324 GCACAGAA----CATACATGTGCAGCCTGATGA-------ACCCGACACCACCCA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30088307 44 -  71996105 gcacagaa----catacatgtgcagcctgatga-------acccgacaccaccca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     758512 44 -   1829203 GCACAGAA----CATATATGTGCAGCCTGATGA-------ACCCGACACCACCCA
i colAng1.NW_012115577v1   I 315 C 0
s calJac3.chr4             30918896 44 + 171630274 GCACAGAA----CATACCTGTGCAGCCTGATGA-------ACCCCATACCACCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            89996 44 -    750284 GCACAGAA----CTTACCTGTGCAGCTTGATGA-------ACCCCATACCACTCA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1338021 44 -   1771730 GCAAAGAA----CATACCTATGCAGCCTAATGA-------ACCCCATACCAACCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      37733 44 -    566255 GCACAGAA----CATACCTGTGCAGCCTGATGA-------ACCCCATACCACCCA
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               653184 44 + 123392446 GTATAGAA----CATACATGTGCAGCCTAATGA-------ACCCCATCCCACCCA
i micMur3.chr6             C 0 I 1310
s otoGar3.GL873550           701616 53 +  18854210 ttacagcaacctcaaactcttgggcttaggtgattctcttgcctcagcctccc--
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683956 1518 -   1411461 I
e canFam3.chr12              378003  0 +  72498081 C
e manLeu1.NW_012106264v1      94647 1435 +    779361 M

a score=3057282.000000
s hg38.chr6_GL000254v2_alt  1893011 370 +   4827813 ----ATGTGTGACAACATGT-------------TCCATCTGTCCttgtttttttt--gtttttgt-----ttttg---------------------agacagagtctcactccctcacccggg------------------------ctggagtgcagtggtgc--------gatgttggctcactacaacctcatcctcccaggttcaagcga-----------ttctcgtgcctcaacctcctgagtagctgagaccacaggcgtgcggctccacacctggctaa-ctttttgta---tttttagtagagatagggttt--------------------tgccatgttggccaggct------ggtctcaaactcctgacctcaagtaatgcgcctgcctcagcctcccaaagtgctaggattacagggatgagccaccata-ccggccGCCACTCATCCTTCTTGATCATAATCCTCTCCCTCTAT
s panTro5.chr6             30738670 371 + 175400573 ----ATGTGTGACAACATGT-------------TCCATCTGTCCttgtttttttt-tgtttttgt-----ttttg---------------------agacagagtctcactccctcacccggg------------------------ctggagtgcagtggtgc--------gatgttggctcactacaacctcatcctcccaggttcaagcga-----------ttctcgtgcctcaacctcctgagtagctgagaccacaggcgtgcggctccacacctggctaa-ctttttgta---tttttagtagagatagggttt--------------------tgccatgttggccaggct------ggtctcaaactcctgacctcaagtaatgcacctgcctcagcctcccaaagtgctaggattacaggcatgagccaccATA-CTGGCCGCCACTCATCCTTCTTGATCATAATCCTCTCCCTCTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31162322 371 + 173848474 ----ATGTGTGACAACATGT-------------TCCATCTGTCCttgtttttttt-tgtttttgt-----ttttg---------------------agacagagtctcactccctcacccggg------------------------ctggagtgcagtggtgc--------gatgttggctcactacaacctcatcctcccaggttcaagcga-----------ttctcgtgcctcaacctcctgagtagctgagaccacaggcgtgcggctccacacctggctaa-ctttttgta---tttttagtagagatagggttt--------------------tgccatgttggccaggct------ggtctcaaactcctgacctcaagtaatgcacctgcctcagcctcccaaagtgctaggattacaggcatgagccaccATA-CTGGCCGCCACTCATCCTTCTTGATCATAATCCTCTCCCTCTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     669295 370 +   2037526 ----ATGTGTGACAACATGT-------------TCCATCTGTCCttgtttttttt--gtttttgt-----ttttg---------------------agacagagtctcactccctcacccagg------------------------ctggagtgcagtggtgc--------gatgttggctcactacaacctcatcctcccaggttcaagcga-----------ttctcgtgcctcaacctcctgagtagctgagaccacaggcatgtggctccacacctggctaa-ctttttgta---tttttagtagagatagggttt--------------------tgccatgttggccaggct------ggtctcaaactcctgacctcaagtaatgcgcctgcctcagcctcccaaagtgttaggattacaggcatgagccaccata-ccggccGCCACTCATCCTTCTTGATCATAATCCTCTCCCTCTAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75337664 369 + 122973662 ----atgtgtgacaacatgt-------------tccatccgtccttggttttttt-----tttgt-----ttttg---------------------agacagagtctcactccctcacccggg------------------------ctggagtgcagtggtgc--------gatgttggctcactgcaacctcatcctcccaggttcaagtga-----------ttctcgtgtctcaacctcctgagtagctgagaccagaggcgtaaggctccacacctggctaatttttttgta---tttttagtagagatagggttt--------------------tgccatgttggccaggct------ggtctcaaactcctgacctcaagcaatgcgcctgcctcagcctcccaaagtgctgggattacaggcatgagccaccacatccggcctccattcatccttcttgatcataatcctctccctctat
i nomLeu3.chr1a            C 0 M 502
s rheMac8.chr4             31249401 373 + 172585720 ----GTGTGTGACAACAAGT-------------TCCATCtttcctttttttgtttttgcttttgt-----ttttg---------------------agacagagtctcactcccttgcccagg------------------------ctggagtgcaacggtgc--------aatgttggcttatggtaacctcatcctcccaggttcaagcga-----------ttctcatgcctcaacctcctaagtagctgagaccacaggcgtacggctccacgcccggctaa-atttttgta---tttttagtagaggtagggttt--------------------tgccatgttggccaggct------ggtctcaaactcctgacctcaagcaatccgcctgcctcagcctcccaaagtgctgggattacaggcatgagccaccgcacccggccTCCATTCATCCTTCTTGATCATAAGCCTCTCCCTCTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30538411 373 - 170955103 ----GTGTGTGACAACACGT-------------TCCATCtttcctttttttgtttttgcttttgt-----ttttg---------------------agacagagtctcactcccttgcccagg------------------------ctggagtgcaacggtgc--------aatgttggcttatggtaacctcatcctcccaggttcaagcga-----------ttctcatgcctcaacctcctaagtagctgagaccacaggcgtacggctccacgcccggctaa-atttttgta---tttttagtagaggtagggttt--------------------tgccatgttggccaggct------ggtctcaaactcctgacctcaagcaatccgcctgcgtcagcctcccaaagtgctgggattacaggcatgagccaccgcacccggccTCCATTCATCCTTCTTGATCATAAGCCTCTCCCTCTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     834701 373 +   1495729 ----GTGTGTGACAACACGT-------------TCCATCtttcctttttttgtttttgcttttgt-----ttttg---------------------agacagagtctcactcccttgcccagg------------------------ctggagtgcaacggtgc--------aatgttggcttatggtaacctcatcctcccaggttcaagcga-----------ttctcatgcctcaacctcctaagtagctgagaccacaggcgtacggctccacgcccggctaa-atttttgta---tttttagtagaggtagggttt--------------------tgccatgttggccaggct------ggtctcaaactcctgacctcaagcaatccgcctgcctcagcctcccaaagtgctgggattacaggcatgagccaccgcacccggccTCCATTCATCCTTCTTGATCATAAGCCTCTCCCTCTAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      57831 373 -    811324 ----GTGTGTGACAACACGT-------------TCCATCtttcctttttttgtttttgcttttgt-----ttttg---------------------agacagagtctcactcccttgcccagg------------------------ctggagtgcagcggtgc--------aatgttggcttatggtaacctcatcctcccaggttcaagcga-----------ttctcatgcctcaacctcctaagtagctgagaccacaggcgtacggctccacgcccagctaa-atttttgta---tttttagtagaggtagggttt--------------------tgccatgttggccaggct------ggtctcaaactcctgacctcaagcaatccgcctgcctcagcctcccaaagtgctgggattacaggcatgagccaccgcacccagccTCCATTCATCCTTCTTGATCATAATCCTCTCCCTCTAC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30088351 373 -  71996105 ----gtgtgtgacaacacgt-------------tccatctttcctttttttgtttttgcttttgt-----ttttg---------------------agacagagtctcactcccttgcccagg------------------------ctggagtgcagcggtgc--------aatgttggcttatggtaacctcatcctcccaggttcaagcga-----------ttctcatgcctcaacctcctaagtagctgagaccacaggcgtacggctccacgcccggctaa-atttttgta---tttttagtagaggtagggttt--------------------tgccatgttggccaggct------ggtctcaaactcctgacctcaagcaatccacctgcctcagcctcccaaagtgctgggattacaggtatgagccaccgcaccccgcctccattcatccttcttgatcataatcctctccctctac
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     758556 373 -   1829203 ----GTGTGTGACCACATGT-------------TCCATCtttccttattttgtttttacttttgt-----ttttg---------------------agacagagtctcactcctttgcccagg------------------------ctggagtgcagtggtaa--------gatgttggcttacggtaacctcatcctcccaggttcaagcga-----------ttctcatgcctcaacctcctgagtagctcagaccacaggcgtacggttccatgcccggctaa-ttttttgta---tttttagtagaggtagggttt--------------------tgccatgttggccaggct------ggtctcaaactcctgacctcaagcaatccgcctgcctcagcctcccaaagtgctgggattacaggcatgagccaccgcacccggccTCCATTCATccttcttgatcataatcctctccctctac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30918940 366 + 171630274 ----ATGTGTGGCAACACGT-------------TCCATTTGACCttg------------ttttgttt---ttttg---------------------agacagaatcttactccctcacccagg------------------------ctggagtgcagtggtgc--------aatgtcggctcactccagctgcagcctcccaggttcaagtga-----------ttctcgtgcctcagactcctgagtagctgggaccacaggcatgcaactccaagcccagctaa-ttttttgtatttttttttgtagaggtggggttt--------------------tgccatgttggtcaggct------gatctcaaactcctgacctcaagcaatccacctgcctcagcctcccaaagtactgggattacacgcgtgagccaccacacccaaccTCCATTCATCCTTCTTGATTATAATcctctccctccac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            90040 378 -    750284 ----ATGTGTGACAACACGT-------------TCCATTTGTCCttg-tttgtttttgtttttgtttttgttttg---------------------agacagagtctcactccctcacccagg------------------------ctggagtgcggtgatgc--------aatgtcggctcactccaactgtagcctcccaggttcaagtga-----------ttctcatgcctcagactcctgagtagcagggaccacaggcatgcaactccatacccagctaa-ttttttgta--tttttttgtagaggtgaggttt--------------------tgccatgttggtcaggct------ggtctcaaactcctgacctcaagcaatgcacctgcctcagcctcccaaagtactgagattacacacatgagccaccacacctgaccTCCACTCATCCTTCTTGATTACAATcctctccctccac
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1338065 371 -   1771730 ----ATGTGTGACAACATAT-------------TCCAtttgtccttg-----tttttgtttttgttt---ttttg---------------------agacagagtctcactccctcacccagg------------------------ctggagtccagtggtgc--------aatgtcagctcactccaactgcagcctcccaggttcaagtga-----------ttctggtgcctcagactcctgagtagcagggaccacaggcatgcaactccacgcccagctaa-ttttttgta--tttttttgtaaaggtgaggttt--------------------tgccatgttggtcaggct------ggtgtcaaactcctgacctcaagcaatgcacctgcctcagcctcccaaagtactgggattacatgcatgagccaccacacccgaccTCCGTTCATCCTTCTTGATTATAATcctctccctccac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      37777 373 -    566255 ----ATGTGTGACAACATGT-------------TCCATTTGTCCttt-tttgtttttgtttttgttt---ttttg---------------------agacag--tctcactccctcacccagg------------------------ctggagtgcagtggtgc--------aatgtaagctcactccaactgcagcctcccaggttcaagtga-----------ttcttgtgcctcagactcctgagtagctgggaccacaggcatgcaactccacgcccagctaa-ttttttgta--tttttttgtagaggtggggttt--------------------tgccatgttggtcaggct------ggtctcaaactcctgacctcaagcaacccacctgcctcagcctcccaaagtactgggattacatgtgtgagccacctcacccgaccTCCATTCATCCTTCTTGATTATAATCCTCTCCCTCCAC
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           701669 442 +  18854210 aagtagctgggaccacaggcatcagccacaatgaccagcttttttttttttttttttttttttgc-----agttgtcattgttgtttagctggcctgggctggttcaaacccaccagcctgggtgtatgtggccagcaccctactcactgagctacagTGCCAcccccaaagagtatcttcttaacctcacctcagctgcccactcctatgttaatacctggaccctttcattTCACAACCCCCTCTGCC-CTGATATCCCATCTTT------------CCAGCTCA-Ctttttttt---ttt------gagacagagtctcaagctgtcccctgggcagatgccatggcatcacagctaacagcaacctccaactcctgggctcaagcgagtctcttgcctccgcctcccaagtagctgggactacaggcacacgccacaatgcccagc---------tattttttggttgcagccgt----------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               653228 1310 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683956 1518 -   1411461 I
e canFam3.chr12              378003   0 +  72498081 C
e manLeu1.NW_012106264v1      94647 1435 +    779361 M

a score=1528144.000000
s hg38.chr6_GL000254v2_alt  1893381 207 +   4827813 AC--ATGCAAGCTTTATCCTTTTAAGGAAATCAACTCCTTACATTTCTCTTTAGTTTATGACCTGTGTATCTCTCaacaatgcagcttaattttgcagctttcaaacttgatagaactgaaattgtgcagtatggatgctattgggtcagactcttttcacacaatgttatgtGAAG---------TTGTTGCACCttctctcatgggcctactccag
s panTro5.chr6             30739041 207 + 175400573 AC--ATGCAAACTTTATCCTTTTAAGGAAATCTACTCCTTACATTTCTCTTTAGTTTATGACCTGTGTATCTCTCaacaatgcagcttaattttgcagctttcaaacttgatagaactgaaattgtgcagtatggatgctattgggtcagactcctttcacacaatgttatgtGAAG---------TTGTTGCACCttctctcatgggcctactccag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31162693 207 + 173848474 AC--ATGCAAACTTTATCCTTTTAAGGAAATCTACTCCTTACATTTCTCTTTAGTTTATGACCTGTGTATCTCTCaacaatgcagcttaattttgcagctttcaaacttgatagaactgaaattgtgcagtatggatgctattgggtcagactcctttcacacaatgttatgtGAAG---------TTGTTGCACCttctctcatgggcctactccag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     669665 207 +   2037526 AC--ATGCAAGCTTTATCCTTTTAAGGAAATCTACTCCTTACATTTCTCTTTAGTTTATGACCTGTGTATCTCTCaacaatgcagcttaattttgcagctttcaaacttgatagaactgaaattgtgcagtatggatgctattgggtcagactcctttcacacaatgctatgtGAAG---------TTGTTGCACCttctcttatgggcctactccag
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31249774 207 + 172585720 AC--GTGTGAACTTTATCCTTTTAAGAGAATCCACTCCTTACATTTCTCTTTAGTTTATGACCTGTGTGTCTCTCAACAATGCagcttaattttgcagctttcaaacttgatacaactgaaattgtgcggtatggatgctactgtgtcaggctcctttcacataactttatgtGAAG---------TTGTTGCACCttctctcattgtcctactccaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30538784 207 - 170955103 AC--ATGTGAGCTTTATCCTTTTAAGAGAATCCACTCCTTACATTTCTCTTTAGTTTATGATCTGTGTGTCTCTCAACAATGCAGCTTAATTTTGCAGCTTTCAAACTTGATACAACTGAAATTGTGCGGTATGGATGCTACTGTGTCAGGCTCCTTTCACATAACTTTATGTGAAG---------TTGTTGCACCttctctcatggtcctactccaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     835074 207 +   1495729 AC--ATGTGAGCTTTATCCTTTTAAGAGAATCCACTCCTTACATTTCTCTTTAGTTTATGACCTGTGTGTCTCTCAACAATGCagcttaattttgcagctttcaaacttgatacaactgaaattgtgcggtatggatgctactgtgtcaggctcttttcacataactttatgtGAAG---------TTGTTGCACCttctctcattgtcctactccaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      58204 206 -    811324 AC--ATGTGAGCTTTATCCTTTTAAGAGAATCCACTCCTTACATTTCTCTTTAGTTTATGACCTGTGTATCTCTCAACAATGCagcttaattttgcagctttcaaacttgatacaactgaaattgtgcggtatggatgctactgtgtcaggctcctttcacataactttatgtGAA----------TTGTTGCACCttctctcatggtcctactccaa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30088724 207 -  71996105 ac--atgtgagctttatccttttaagagaatccactccttacatttctctttagtttatgacctgggtatctcccaacaatgcagcttaattttgcagctttcaaacttgatacaactgaaattgtgcggtatggatgctactgtgtcaggctcctttcatataactttatgtGAAG---------TTGTTGTACCttctctcatggtcctactccaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     758929 207 -   1829203 ac--atgtgagctttatccttttaagagaatccactccttacatttctctctagtttatgacctgtgtatctctcaacaatgcagctttattttgcagctttcaaacttgatacaactgaaattgtgcagtatggatgctaccgtgtcaggctcctttcacataactttatgtGAAG---------TTGTTGCACCtcctctcatggtcccactccaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30919306 209 + 171630274 acatatgtgaactttatacttttaagggaatctacttcttatgtttctctttagtttatgacctgtgtatctctgaacaatgcagcttaattttgcagctttcaaactttatacaactgaaactgtgcagtatgtatgcaattgtgtcaggttcctttcacacaacgttatatGAGG---------TTGTTGCACCTGctctcatgggcctactccaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            90418 204 -    750284 ac--atgtgaacttcatccttttaagggaatccacttcttatgtttctctttagtttatgacccatgtatctctcaacaatgcagcttaattttgcagctttcaaactttatacaactgaaattgtgcagtatgtatgcaattgtgtcaggttcctttcacaca---ttatataagg---------ttgttgCACCtcctctcatcggcctactccag
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1338436 207 -   1771730 ac--atgtgaactttatccttttaagggaatccacttcttatatttctctttagtttatgacccgtgtatctctcaacaatgcagcttaattttgcagctttcaaactttatacgactgaaattgtgcagtatgtatccaattgtgtcaggctcctttcacacaacattatatGAGG---------TTGTTGCACCtcctctcatgggcctactccaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      38150 207 -    566255 AC--ATGTGAACTTTAACTTTTTAAGGGAATCCACTTCTTATGTTTCTCTTTAGTTTAAGACCtgtgtatctctcaacaatgtagcttaattttgcagctttcaaactttatacaactgaaattatgcagtatgtatgcaattgtgtcaggctcctttcacgcaatgttatatGAGG---------TTGTTGCACCtcctctcatgggcctactccaa
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           702111 120 +  18854210 -----------------------------------------cattgttgtttggt---gggcc-----------------------------------------------------cCAAAACTGTGTAGCATGGATGTTATTGTGTCTGGTTCCTTTTGTGCAACATTATGAGCAGTTCCCCATATTGCTGCAcatcctct-gtgggcctactcaat
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               653228 1310 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683956 1518 -   1411461 I
e canFam3.chr12              378003   0 +  72498081 C
e manLeu1.NW_012106264v1      94647 1435 +    779361 M
e nomLeu3.chr1a            75338033 502 + 122973662 M

a score=2611630.000000
s hg38.chr6_GL000254v2_alt  1893588 274 +   4827813 tttggctttct-----ccaccccactgaaaccacggatcttcacattgccaagcctgctgagcagctctctgtt---ctctcatttggcctgtcagcaacagttgacacagctgattcctcctttcctcttcaaacaccttcttcatttgacttctgggacgctcccttggttttcctccttctcactgtcctttgcccaa---ctaaatgctggcttgtcctaaggctcagtccttgacctcctcttctccaactatttcctttctctcctacatctcatccaa
s panTro5.chr6             30739248 274 + 175400573 tttggctttct-----ccaccccactgaaaccacggatcttcacattgccaagcccgctgagcagctctctgtt---ctctcatttggcctgtcagcaacagttgacacagctgattcctcctttcctcttcaaacaccttcttcatttgacttctgggacgctcccttggttttcctccttctcactgtcctttgcccaa---ctaaatgctggcttgtcctaaggctcagtccttgacctcctcttctccaactatttcctttctctcctacatctcatccaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31162900 274 + 173848474 tttggctttct-----ccaccccactgaaaccacggatcttcacattgccaagcccgctgagcagctctctgtt---ctctcatttggcctgtcagcaacagttgacacagctgattcctcctttcctcttcaaacaccttcttcatttgacttctgggacactcccttggttttcctccttctcactgtcctttgcccaa---ctaaatgctggcttgtcctaaggctcagtccttgacctcctcttctccaactatatcctttctctcctacatctcatccaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     669872 271 +   2037526 tttggctttct-----ccaccccactgaaaccacggatcttcacattgccaagcccgctgagcaggtctctgtt---ctctcatttggcctgtcagcaacagttgacacagctgatccctcctttcctcttcaaacaccttcttcatttgacttctgggacgctcccttggttttcctccttctcactgtcctttgcccaa---ctaaatgctggcttgtcctaaggctcagtccttgacctcctcttctccaac--ttttctttctct-ctacatctcatccaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75338535 274 + 122973662 tttggctttct-----ccaccccactgaaaccacggatcttcacattgccaagcccgctgagcaggtctctgct---ctctcatttggcctgtcagcaaccgttgacacaactgttccctcctttcctcttcaaacaccttcttcatttgacttctgggacactcccttggttttcctccttctcactgtcctttgcccaa---ctgaatgctggcttgtcctaaggctcagtccttgacctcctcttctccacctatttcctttctctcctacatctcatccaa
i nomLeu3.chr1a            M 502 C 0
s rheMac8.chr4             31249981 273 + 172585720 tttggc-ttct-----ccaccccactgaaactatggattttcacattgccaagcccgctgagcaggtctctgtt---ctctcacttggcctgtcagcaacagttgacacagctaatccctcctttcctcttcaaacaccttcttcatttgacttctgggacactcccttggttttcctccttctcattctcctttgcccag---ctaaatgctggcttgtcctaaggctcaatccttgacctcctcttctccacctatttcctttctctcctacatctcatccaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30538991 273 - 170955103 tttggc-ttct-----ccaccccactgaaactatggattttcacattgccaagcccgctgagcaggtctctgtt---ctctcacttggcctgtcagcaacagttgacacagctaatccctcctttcctcttcaaacaccttcttcatttgacttctgggacactcccttggttttcctccttctcactctcctttgcccag---ctaaatgctgacttgtcctaaggctcaatccttgacctcctcttctccacctatttcctttctctcctacatctcatccaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     835281 273 +   1495729 tttggc-ttct-----ccaccccactgaaactatggattttcacattgccaagcccgctgagcaggtctctgtt---ctctcacttggcctgtcagcaacagttgacacagctaatccctcctttcctcttcaaacaccttcttcatttgacttctgggacactcccttggttttcctccttctcactctcctttgcccag---ctaaatgctggcttgtcctaaggctcaatccttgacctcctcttctccacctatttcctttctctcctacatctcatccaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      58410 273 -    811324 tttggc-ttct-----ccaccccactgaaactatggattttcacattgccaagcccgctgagcaggtctctgtt---ctctcgcttggcctgtcagcaacagttgacacagctgatccctcctttcctcttcaaacaccttcttcatttgacttctgggacactcccttggttttcctccttctcactctcctttgcccag---ctaaatgctggcttgtcctaaggctcaatccttgacctcctcttctccacctatttcctttctctcctacatctcatccaa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30088931 273 -  71996105 tttggc-ttct-----ccaccccactgaaactatggattttcacattgccaagcccgctgagcaggtctctgtt---ctctcacttggcctgtcagcaacagttgacacagctgatccctcctttcctcttcaaacaccttcttcatttgacttctgggacactcccttggttttcctccttctcactctcctttgcccag---ctaaatgctggcttctcctaaggctcaatccttgacctcctcttctccacctatttcctttctctcctacatctcatccaa
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     759136 273 -   1829203 tttggc-ttct-----ccgccccactgaaactatggatcttcacattgccaagcccgctgagcaggtctctgtt---ctctcacttggcctgtcagcaacagttgacacagctgatccctcctttcctcctcaaacaccttcttcatttgacttctgggacactcccttggttttcctccttctcactctcctttgcccaa---ctaaatgctggcttgtcctaaggctcaatccttgacctcctcttctccacctatttcctttctctcctacatctcatccaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30919515 273 + 171630274 tttggctttct-----ccaccccactgaaaccactgatcttcatattaccaagcccgctgagcaggtctctgtt---ctctcacttggcctgtaggcaacagctgacacagctgatccctcctttcctcttcaaacaccttcttcatttgacttctgggacactcccttggttttcctccttctcactctcctttgcccag---ctaaatgt-ggcttgtcctgaagctcggtccttgacctcctcttctctgcctgtttcctttctctcctatatctcatccaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            90622 268 -    750284 tttggctttct-----ccaccccactgaaaccactgatcttcacattaccaagcccgctgagcaggtctctgt-----tctcacttggcctgtaggcaacagctgacacagctgatccctcctttcctcttcaaacaccaccttcacttgacttctgggacactcccttggttttcctccttctcactctcctttgcccag---ctaaatgc-agcctgtcctgaagctctgtctttga---cctcttctctacctgtttcctttctctcctacatctcatccaA
i saiBol1.JH378327         C 0 M 370
s cebCap1.NW_016107755v1    1338643 273 -   1771730 tttggctttct-----ccaccccactgaaaccactgctcttcacattaccaagcccgctgagcaggtctctgtt---ctcttacttggtctgtaggcaacagctgacacagctgatccctcctttcctcttcaaacaccttcttcatttgacttctgggacactcccttggttttcctccttctcactctcctttgcccag---ctaaatgc-agcttgtcctgaagctcggtccttgacctcctcttctctacctgtttcctttctctcctacatctcatccaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      38357 255 -    566255 ttttgctttct-----ccaccccactgaaaacactcatcttcacattaccaagcccgctgagcaggtctctgtt---ctctcacttggcctgtaggcaacagctgacacagctgattcctcctttcctcttcaaacaccttcttcatttgacttctgggacactcccttggttttcct------------------cccag---ctaaatgc-ggcttgtcctgaagctcggtccttgacctcctcttctctacctgtttcctttctctcctacatctcatccaa
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           702231 277 +  18854210 tatggttttctctcccccattccactgaaaccactgatcttcgaattaccaagcctgctgagcaagtctctattctcctcttactcaacctgtcagcaatatttgacacagctcatgccacctttcctctttgaatacttttttcatttgacttctggaatactccctgggttttcctcctt---actctcctttattcaacctctaaatgc-tgcttatactgtggctcagtccttggcttcctcttctatacctacctcttgcct----tacatttcacccaa
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               653228 1310 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683956 1518 -   1411461 I
e canFam3.chr12              378003   0 +  72498081 C
e manLeu1.NW_012106264v1      94647 1435 +    779361 M

a score=50452.000000
s hg38.chr6_GL000254v2_alt  1893862 10 +   4827813 ttccatggct
s panTro5.chr6             30739522 10 + 175400573 ttccatggct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31163174 10 + 173848474 ttccatggtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     670143 10 +   2037526 ttccatggct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75338809 10 + 122973662 ttccatggct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31250254  9 + 172585720 ttccgtggc-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30539264  9 - 170955103 ttccgtggc-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     835554  9 +   1495729 ttccgtggc-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      58683  9 -    811324 ttccgtggc-
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30089204 10 -  71996105 ttccgtggcc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     759409  9 -   1829203 tttcatggc-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30919788  9 + 171630274 tcccacggc-
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1338916 10 -   1771730 tcccacggcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      38612 10 -    566255 tcccatggct
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           702508 10 +  18854210 tcccatggct
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               653228 1310 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683956 1518 -   1411461 I
e canFam3.chr12              378003  0 +  72498081 C
e saiBol1.JH378327            90890 370 -    750284 M
e manLeu1.NW_012106264v1      94647 1435 +    779361 M

a score=576674.000000
s hg38.chr6_GL000254v2_alt  1893872 79 +   4827813 ttttttttttttttttt--------------gacgaagtcttgctc-tgtcacccaggctggagtgcagtggtatgatcttggctcaccgtaac
s panTro5.chr6             30739532 89 + 175400573 ttttttttttttttttt----ttttttttttgacaaagtcttgctc-tgtcactcaggctggagtgcagtggtatgatcttggctcaccgtaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31163184 86 + 173848474 ttttttttttttttttt-------tttttttgacaaagtcttgctc-tgtcactcaggctggagtgcagtggtatgatcttggctcaccgtaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     670153 93 +   2037526 tttttttttttttttttttttttttttttttgacgaagtcttgctc-tgtcacccaggctggagtgcagtggtatgatcttggctcaccgtaac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75338819 88 + 122973662 ttttttttttttttttt-----tttttttgagacgaagtcttgctt-tgtcgcccaggctagagtgcagtggcatgaccttggctcaccgtaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31250263 80 + 172585720 ------ttttttttttt-------tttttgagacaaagtctcgctc-tgttgcccaagctggagtgcagtggcatgatcttggctcactgtaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30539273 77 - 170955103 ---------tttttttt-------tttttgagacaaagtctcgctc-tgttgcccaagctggagtgcagtggcatgatcttggctcactgtaac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     835563 79 +   1495729 -------tttttttttt-------tttttgagacaaagtctcgctc-tgttgcccaagctggagtgcagtggcatgatcttggctcactgtaac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      58692 80 -    811324 ------ttttttttttt-------tttttgagacaaagtctcgctc-tgttgcccaagctggagtgcagtggcatgatcttggctcactgtaac
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30089214 86 -  71996105 ttttttttttttttttt-------tttttgagacaaagtctcgctc-tgttgcccaagctggagtgcagtggcatgatcttggctcactgtaac
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115577v1     759418 80 -   1829203 ------ttttttttttt-------tttttgagacaaagtctcgctc-tgttgcccaagctggagtgcagtggcatgatcttggctcactgtaac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30919797 71 + 171630274 ---------------tt-------ttttttagacaaagtctcactc-tgtcgcccaggctggagtgcagaggcacgatctcagctcactgtaac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            91260 79 -    750284 -------tttttttttt-------tttttaagacaaagtctcactc-tgtcgcccaggctggagtgcagaggcacgatctcagctcactgaaac
i saiBol1.JH378327         M 370 C 0
s cebCap1.NW_016107755v1    1338926 79 -   1771730 -------tttttttttt-------ttttttagacgaagtctcactc-tgtcacccaggctggaatgcagaggcacaatctcagctcactgtaac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      38622 77 -    566255 ---------tttttttt-------ttttttagacaaagtctcgctc-tgtcgcccaggctggagtgcagaggcacgatctcagctcactgtaac
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           702518 40 +  18854210 ---------------------------------ttaaatactgcttgtatcatcaatg----------gtgccccaattttaa-----------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               653228 1310 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683956 1518 -   1411461 I
e canFam3.chr12              378003  0 +  72498081 C
e manLeu1.NW_012106264v1      94647 1435 +    779361 M

a score=907564.000000
s hg38.chr6_GL000254v2_alt  1893951 101 +   4827813 ctctgcctccaggattcaag----caattctcctgcctcacc----ctcctga-----gtatctgg-g---actacaggc--acgcaccaccacacacggctaattttctgtattttttg
s panTro5.chr6             30739621 101 + 175400573 ctccgcctccaggattcaag----caattctcctgcctcacc----ctcctga-----gtatctgg-g---actacaggc--acgcaccaccacacacggctaattttctgtattttttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31163270 101 + 173848474 ctccgcctccaggattcaag----caattctcctgcctcacc----ctcctga-----gtatctgg-g---actacaggc--acgcaccaccacacacggctaattttctgtattttttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     670246 101 +   2037526 ctccacctccaggattcaag----caattctcctgcctcacc----ctcctga-----gtatctgg-g---actacaggc--acgcaccaccacacacggctaattttctgtattttttg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75338907 101 + 122973662 ctccgcctccaggattcaag----caattctcctgcctcacc----ctcctga-----gtagctga-g---actacaggc--atgcaccaccacgcacggctaattttctgtattttttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31250343 101 + 172585720 ctccgcctccaggattcaag----cgattatcctgtctcacc----ctcctga-----gtagctgg-g---actataggc--atgcaccaccacgcacggttaattttttgtattttttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30539350 101 - 170955103 ctccccctccaggattcaag----cgattatcctgtctcacc----ctcctga-----gtagctgg-g---actacaggc--atgcaccaccacgcacggttaattttttgtattttttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     835642 101 +   1495729 ctccgcctccaggattcaag----cgattatcctgtctcacc----ctcctga-----gtagctgg-g---actacaggc--atgcaccaccacgcacggttaattttttgtattttttg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      58772 101 -    811324 ctccgcctccaggattcaag----cgattatcctgtctcacc----ctcctga-----gtagctgg-g---actacaggc--atgcaccaccacgcacggttaattttttgtattttttg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30089300 101 -  71996105 ctccacctccaggattcaag----cgattatcctgtctcacc----ctcctaa-----gtagctgg-g---actacaggc--atgcactaccacacacggttaattttttgtattttttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      96082 101 +    779361 ctccgcctccaggattcaag----cgattatcctgtctcacc----ctcctga-----gtagctgg-g---actacaggt--atgcaccaccacgcacggttaattttttgtattttttg
i manLeu1.NW_012106264v1   M 1435 C 0
s colAng1.NW_012115577v1     759498 101 -   1829203 ctccgcctccaggattcaag----caattatcctgtctcacc----ctcctga-----gtagctgg-g---actacaggc--atgcaccaccacgcacagttaattttttgtattttttg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30919868  97 + 171630274 ctccacctcccaggttcaag----caattctcgtgccccagc----ctcccaa-----gtagctag-g---actacagac--atgcaccaccacacccagctagttttttg----tttcg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            91339 100 -    750284 ctccacttcccaggtttaag----taattctcgtgactcagc----ctcccaa-----gtagctgg-gactactacagac--atgcaccaccacacccagctaagtttttg----ttttg
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1339005  97 -   1771730 ctccgcctcccaggttcaag----caattcttgtgcctcagc----ctcccaa-----gtagctgg-g---actacagac--atgcaccaccacgcccagctaattttttg----ttttg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      38699  99 -    566255 ctccacctcccaggttcaaa----caattcttgtgcctcagc----ctcccaa-----gtagctgg-g---actacagacatatgcaccaccacgcccagctagttttttg----ttttg
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           702558 109 +  18854210 --atacttcctaaattcaaatcttcagtccttttgtctcctctaagctcctgactcttatacccagtg---tctat---t--cagcatctccac-tagggattttttttttttttttttg
i otoGar3.GL873550         C 0 I 61
e micMur3.chr6               653228 1310 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683956 1518 -   1411461 I
e canFam3.chr12              378003   0 +  72498081 C

a score=1253899.000000
s hg38.chr6_GL000254v2_alt  1894052 127 +   4827813 gtagagacagggtttcaccatgttggccaggctggtctcaaactcctggcctcaagtgatccacctgcctcagcctcccaaagggctgggattataggcatgagccactgtgcccagcctaatcctg
s panTro5.chr6             30739722 127 + 175400573 gtagagacagggtttcaccatgttggccaggctggtctcaaactcctggcctcaagtgatccacctgcctcagcctcccaaagggctgggattataggcatgagccactgtgcccagcctaatcccg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31163371 127 + 173848474 gtagagacagggtttcaccatgttggccaggctggtctcaaactcctggcctcaagtgatccacctgcctcagcctcccaaagggctgggattataggcatgagccactgtgcccagcctaatcccg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     670347 127 +   2037526 gtagagacagggtttcaccatgttggccaggctggtctcaaactcctggcctcaagtgatccacctgcctcagcctcccaaagggctgggattataggcatgagccactgtgcccagcctaatcccg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75339008 127 + 122973662 gtagagacagggtttcaccatgttggccaggctggtctcaaactcctggcctcaagtgatccacctgcctcggcctcccaaagggctgggattataggtgtgagccactgtgcccagcctaatccca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31250444 127 + 172585720 gtagagacagggtttcaccatgttggccaggctggtctcaaatgcttggcctcaggtgattcacctgcctccgcctcctaaagggctgggattataggtgtgagccactgtgcccagcctaattcca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30539451 127 - 170955103 gtagagacagggtttcaccatgttggccaggctggtctcaaatgcttggcctcaggtgattcacctgcctccgcctcctaaagggctgggattataggtgtgagccactgtgcccagcctaattcca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     835743 127 +   1495729 gtagagacagggtttcaccatgttggccaggctggtctcaaatgcttggcctcaggtgattcacctgcctccgcctcctaaagggctgggattataggtgtgagccactgtgcccagcctaattcca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      58873 127 -    811324 gtagagacagggtttcaccatgttggccaggctggtctcaaatgcttggcctcaggtgattcacctgcctccgcctcctaaaaggctgggattataggtgtgagccactgtgcccagcctaattcca
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30089401 127 -  71996105 gtagagacggggtttcaccacgttggccaggctggtctcaaatgcttggcctcaggtgattcacctgcctccacctcctaaagggctgggattataggcgtgagccactgtgcccagcctaattcca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      96183 127 +    779361 gtagagacagggtttcaccatgttggccaggctggtctcaaatgcttggcctcaggtgattcacctgcctccgcctcctaaaaggctgggattataggtgtgagccactgtgcccagccTaattcca
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     759599 127 -   1829203 gtagagacagggtttcgccatgttggccaggctggtctcaaacacctggcctcaggtgattcacctgcctccgcctcccaaagggctgggattataggcgtgagccactgtgcccagcctaatccca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30919965 125 + 171630274 gaagagacg--gtttcaccatgttggccaggctggtctggaactcctggcctcaagtgatccacctgccttggcttcccaaagggctgggattataggcataagccactgcactcagcctaatccca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            91439 125 -    750284 gaagagaca--gtttcaccatgttggccaggttggtctcgaactcctggcctcaagtgatccacctgccttggcttcccaaagggctgggattataggcataagccactgcactcagccTaatccca
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1339102 125 -   1771730 gaagagaca--gtttcaccatgttggccaggctggtctcgaactcctggcctcaagtgatccacctgccttggctttccaaagggctgggattataggcataagccactgcacttagcctaatccca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      38798 125 -    566255 gaagagaca--gtttcaccatgttggccaggctggtctcgaactcctggcctcaagtgatccacctgccttggcttcccaaagggctgggattataggcataagccactacactcagcctaatccca
i aotNan1.NW_018511496v1   C 0 C 0
e micMur3.chr6               653228 1310 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     683956 1518 -   1411461 I
e canFam3.chr12              378003   0 +  72498081 C
e otoGar3.GL873550           702667  61 +  18854210 I

a score=864663.000000
s hg38.chr6_GL000254v2_alt  1894179 78 +   4827813 tggctttaaataccacttatatccatcaatggttccccaaatttaaatctttcccaaattcaaatttccg-tcctcttc
s panTro5.chr6             30739849 78 + 175400573 tggctttaaataccacttatatccatcaatggttccccaaatttaaatctttcccaaattcaaatttcca-tcctcttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31163498 78 + 173848474 tggctttaaataccacttatatccatcaatggttccccaaatttaaatctttcccaaattcaaatttcca-tcctcttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     670474 78 +   2037526 tggctttaaataccacttatatccatcaatggttccccaaatttaaatctttcccaaattcaaatttccg-tcctcttc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75339135 78 + 122973662 tggctttaaataccacttatatccatcaatggctccccgaatttaaatctttcccaaattcaaatttccg-tcctcttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31250571 78 + 172585720 tggctttaaataccatatatatccatcaatggctccccaaatttaaatctttcccaaactcaaatttcta-tcctcttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30539578 78 - 170955103 tggctttaaataccatatatatccatcaatggctccccaaatttaaatctttcccaaactcaaatttcta-tcctcttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     835870 78 +   1495729 tggctttaaataccatatatatccatcaatggctccccaaatttaaatctttcccaaactcaaatttcta-tcctcttc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      59000 78 -    811324 tggctttaaataccatatatatccatcaatggctccccaaatttaaatctttcccaaactcaaatttcta-tccccttc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30089528 78 -  71996105 tggctttaaataccacatatatccatcaatggctccccaaatttaaatctttcccaaactcaaatttcta-tcctcttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      96310 78 +    779361 tggctttaaataccatatatatccatcaatggctccccaaatttaaatctttcccaaactcaaatttcta-tccccttc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     759726 78 -   1829203 tggttttaaataccacatatatccatcaatggctccccaaatttaaatccttcccaaactcaaatttctg-tcctcttc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30920090 79 + 171630274 cagctttaaataccacttatatccatcaatggctccccaaatttaaatttttcccaaaTTCAAATTTCCAGTCCTCTTC
i calJac3.chr4             C 0 I 212
s saiBol1.JH378327            91564 79 -    750284 cagctttaaataccacttatatccatcaatggctccccaaatttaaatctttcccaaattcaaatttccagtcctcttc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1339227 79 -   1771730 tagctttaaatatcacttatatccatcaatggctccccaaatctaaatctttcccaaattcaaatttccagtcctcctc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      38923 79 -    566255 cagctttaaataccacttatatccatcaatggctccccaaatttaaatctttcccaaattcaaatttccagtgctcttc
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     685474 78 -   1411461 tggctttaaagaccacttatag-catcaatggctccccaaatttaaatccttcccaaattcaaatctccagtactcttc
i proCoq1.NW_012149775v1   I 1518 C 0
e micMur3.chr6               653228 1310 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e canFam3.chr12              378003  0 +  72498081 C
e otoGar3.GL873550           702667 61 +  18854210 I

a score=12376.000000
s hg38.chr6_GL000254v2_alt  1894257 1 +   4827813 t
s panTro5.chr6             30739927 1 + 175400573 t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31163576 1 + 173848474 t
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     670552 1 +   2037526 t
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75339213 1 + 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31250649 1 + 172585720 t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30539656 1 - 170955103 t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     835948 1 +   1495729 t
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      59078 1 -    811324 t
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30089606 1 -  71996105 t
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      96388 1 +    779361 t
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     759804 1 -   1829203 t
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30920381 1 + 171630274 t
i calJac3.chr4             I 212 C 0
s saiBol1.JH378327            91643 1 -    750284 t
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1339306 1 -   1771730 t
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      39002 1 -    566255 t
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     685552 1 -   1411461 t
i proCoq1.NW_012149775v1   C 0 C 0
e micMur3.chr6               653228 1310 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e canFam3.chr12              378003 0 +  72498081 C
e otoGar3.GL873550           702667 61 +  18854210 I

a score=55622.000000
s hg38.chr6_GL000254v2_alt  1894258 4 +   4827813 ctcc
s panTro5.chr6             30739928 4 + 175400573 ctcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31163577 4 + 173848474 ctcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     670553 4 +   2037526 ctcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75339214 4 + 122973662 ctcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31250650 4 + 172585720 ctcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30539657 4 - 170955103 ctcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     835949 4 +   1495729 ctcc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      59079 4 -    811324 ctcc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30089607 4 -  71996105 ctcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      96389 4 +    779361 ctcc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     759805 4 -   1829203 ctcc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30920382 4 + 171630274 ctcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            91644 4 -    750284 ctcc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1339307 4 -   1771730 ttcc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      39003 4 -    566255 ttcc
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     685553 4 -   1411461 ctcc
i proCoq1.NW_012149775v1   C 0 I 17
s otoGar3.GL873550           702728 4 +  18854210 ctcc
i otoGar3.GL873550         I 61 C 0
e micMur3.chr6               653228 1310 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e canFam3.chr12              378003 0 +  72498081 C

a score=176652.000000
s hg38.chr6_GL000254v2_alt  1894262 18 +   4827813 cctaagctgctgactact
s panTro5.chr6             30739932 18 + 175400573 cctaagctgctgactact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31163581 18 + 173848474 cctaagctgctgactact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     670557 18 +   2037526 cctaagctgctgactact
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75339218 18 + 122973662 cctaagctgctgactact
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31250654 18 + 172585720 cctaagctgctgactact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30539661 18 - 170955103 cctaagctgctgactact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     835953 18 +   1495729 cctaagctactgactact
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      59083 18 -    811324 cctaagctgctgactact
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30089611 18 -  71996105 cctaagctgctgactact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      96393 18 +    779361 cctaagctgctgactact
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     759809 18 -   1829203 cctaagctgctgactact
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30920386 18 + 171630274 cctaatcttctgactatt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            91648 18 -    750284 cctaatcttctgactact
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1339311 18 -   1771730 cctaatcttctgactact
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      39007 18 -    566255 cctaatcttctgactact
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           702732 13 +  18854210 tttgagccacagg-----
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               653228 1310 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     685557 17 -   1411461 I
e canFam3.chr12              378003  0 +  72498081 C

a score=5126552.000000
s hg38.chr6_GL000254v2_alt  1894280 428 +   4827813 tacccactgcctattcaacatctccactagggatatttaaaaagaatctgaaatttcatttctgattcccctctcctccccaaagccttcaaatctgcttctcccccagtcttcccatctcagtatttccagttgctcaagac--aaaaacctggaagtccttctttatcctcactttccttcacgtgccaactgcaagccatcagcgatctcattttctctaccttcaaaatatatcatgcttccggccctgtctcaccacctccagctccagcatcctactctaagcaactcttatttctctcctagattactgaaatagcctc-aactgctctctctgctccctttcttgcccaccccccatcatttattctctactcaggaggtaaacttataagaaacaaaatcagatcctatcattcccctgttc
s panTro5.chr6             30739950 428 + 175400573 tacccactgcctattcaacatctccactagggatatttaaaaagaatctgaaatttcatttctgattcccctctcctccccaaagccttcaaatctgcttctcccctagtcttcccatctcagtatttccagttgctcaagac--aaaaacctggaagtccttctttatcctcactttccttcacgtgccaactgcaagccatcagcgatctcattttctctaccttcaaaatatatcatgcttccggccctgtctcaccacctccagctccagcatcctactctaagcaactcttatttctctcctagattactgaaatagcctc-aactgctctctctgctccctttcttgcccaccccccatcatttattctctactcaggaggtaaacttataagaaacaaaatcagatcctatcattcccctgttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31163599 428 + 173848474 tacccactgcctattcaacatctccactagggatatttaaaaagaatctgaaatttcatttctgattcccctctcctccctaaagccttcaaatctgcttctcccccagtcttcccatctcagtatttccagttgctcaagac--aaaaacctggaagtccttctttatcctcactttccttcacgtgccaactgcaagccatcagcgatctcattttctctaccttcaaaatatatcatgcttccggccctgtctcaccacctccagctccagcatcctactctaagcaactcttatttctctcctagattactgaaatagtctc-aactgctctctctgctccctttcttgcccaccccccatcatttattctctactcaggaggtaaacttataagaaacaaaatcagatcctatcattcccctgttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     670575 428 +   2037526 tacccactgcctattcaacatctccactagggatatttaaaaagaatctgaaatttcatttctgattcccctctcctccccaaagccttcaaatctgcttctcccccagtcttcccatctcagtatttccagttgctcaagac--aaaaacctggaagtccttctttatcctcactttccttcatgtgccaactgcaagccatcagcgatctcattttctctaccttcaaaatatatcatgcttccggccctgtctcaccacctccagctccagcatcctactctaagcaactcttatttctctcctagattactgaaatagcctc-aactgctctctctgctccctttcttgcccaccccccatcatttattctctactcaggaggtaaacttataagaaacaaaatcagatcctatcattcccctgttc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75339236 427 + 122973662 tgcccactgcctattcaacatctccactagggatatttaaaaaaaatctgaaatttcatttctgattcctctctcctccccaaagccttcaaatctgcttctccgctagtcttcccatctcagtatttccagttgctcaagac--aaaaacctggaagtccttctttatcctcacttt-cgtcatgtgccaactgcaagccatcagcgatctcattttctctaccttcaaaatatatcatgcttccggccctgtctcaccacctccagctccagcatcctactctaaacaactcttatttctctcctagattactgaaatagcctc-gactgctctctctgctccctttcttgcccaccccccatcatttattctctactcaggaggtaaacttataagaagcaaaatcagatcctatcattcccctgttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31250672 427 + 172585720 tgcccactgcctattcaacatctccactagggacatttaaaaagaatctgaaatttaatttctgattcccctctcctccccaaagccttcaaatctgtttctcccctagtcttcccatctcagtatttccagttgctcaagac--aaaaacctggaagtccttctttatcctcactttccttcatgtgccaactgcaaaccattagcaatctcattttctctaccttcaaaatatatcatgcttctggccctgtctcaccacctccagctccagcatcctactctaagcaactcttatttctctcctagattactgaaatagcctt-aactgctctctctgctccccttcttgcccacctcccatcatttattctctactcaggaggtatatttttaagaaacaaaatcaaat-ctatcattctgctgttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30539679 427 - 170955103 tgcccactgcctattcaacatctccactagggacatttaaaaagaatctgaaatttaatttctgattcccctctcctccccaaagccttcaaatctgcttctcccctagtcttcccatctcagtatttccagttgctcaagac--aaaaacctggaagtccttctttctcctcactttccttcatgtgccaactgcaaaccattagcaatctcattttctctaccttcaaaatatatcatgcttctggccctgtctcaccacctccagctccagcatcctactctaagcaactcttatttctctcctagattactgaaatagcctc-aactgctctctctgctccccttcttgcccacctcccatcatttattctctactcaggaggtatacttttaagaaacaaaatcaaat-ctatcattctgctgttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     835971 427 +   1495729 tgcccactgcctattcaacatctccactagggacatttaaaaagaatctgaaatttaatttctgattcccctctcctccccaaagccttcaaatctgcttctcccctagtcttcccatctcagtatttccagttgctcaagac--aaaaacctggaagtccttctttatcctcactttccttcatgtgccaactgcaaaccattagcaatctcattttctctaccttcaaaatatatcatgcttctggccctgtctcaccacctccagctccagcatcctactctaagcaactcttatttctctcctagattactgaaatagcctt-aactgctctctctgctccccttcttgcccacctcccatcatttattctctactcaggaggtatatttttaagaaacaaaatcaaat-ctatcattctgctgttc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      59101 427 -    811324 tgcccactgcctattcaacatctccactagggacatttaaaaagaatctgaaatttaatttctgattcccctctcctccccaaagccttcaaatctgcttctcccctagtcttcccatctcagtatttccagttgctcaagac--aaaaacctgggagtccttctttatcctcactttccttcatgtgccaactgcaaaccattagcaatctcattttctctaccttcaaaatatatcatgcttctggccctgtctcaccacctccagctccagcatcctactctaagcaactcttatttctctcctagattactgaaatagcctc-aactgctctctctgctccctttcttgcccacctcccatcatttattctctactcaggaggtatacttttaagaaacaaaatcaaat-ctatcattctgctgttc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30089629 427 -  71996105 tgcccactgcctattcaacatctccactagggacatttaaaaagaatctgaaatttaatttctgattcccctctcctccccaaagccttcaaatctgcttctcccctagtcttcccatctcagtatttccagttgctcaagac--aaaaacctggaagtccttctttatcctcactttccttcatgtgccaactgcaaaccattagcaatctcattttctctaccttcaaaatatatcatgcttctggccctgtctcaccacctccagctccagcatcctactctaagcaactcttatttctctcctagattactgaaatagcctc-aactgctctctctgctccctttcttgcccacctcccatcatttattctctactcaggaggtatacttttaagaaacaaaatcaaat-ctatcattctgctgttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      96411 427 +    779361 tgcccactgcctattcaacatctccactacggacatttaaaaagaatctgaaatttaatttctgattcccctctcctccccaaagccttcaaatctgcttctcccctagtcttcccatctcaatatttccagttgctcaagac--aaaaacctgggagtccttctttatcctcactttccttcatgtgccaactgcaaaccattagcaatctcattttctctaccttcaaaatatatcatgcttctggccctgtctcaccacctccagctccagcatcctactctaagcaactcttatttctctcctagattactgaaatagcctc-aactgctctctctgctccctttcttgcccacctcccatcatttattctctactcaggaggtatacttttaagaaacaaaatcaaat-ctatcattctgctgttc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     759827 427 -   1829203 tgcccactgcctattcaacatcttcactagggacatttaaaaagaatctgaaatttaatttctgattcccctctcctccccaaagccttcaaatctgcttctccccaagtcttcccatctcagtatttccagttgctcaagac--aaaaacctggaagtccttctttatcctcactttccttcatgtgccaaccgcaaaccattagcaatctcattttctctaccttcaaaatatatcatgcttctggccctgtctcaacacctccagctccagcatcctactctaagcaactctaatttctctcctagattactgaaatagcctc-aactgccctctctgctccctttcttgcccaccccccatcatttattctctactcaggaggtatacttttaagaaacaaaatcaaat-ctatcattttgctgttc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30920404 424 + 171630274 tgcccactgcctatttgacatctccactagggatatttaaaaagaatctaaaatttaatttctgattccctttgcctccccaaagccttcaaatctgcttctcccctagtcttcccatctcagtatttgcagttgctcaagac--aaaaacctggaagtccttctttatcctcacttt----catgtgccaactgcaagccatcagtgatctcattttctctaccttcaaaatacatcacgcttctggtcctgtctcaccacctccagctctagcaccctactcttagcaactcttatttctcctctagactactgaaatagcctcggactgctctctctgctccctttcttg-ccactccccatcatttattctctacttagcaggtaaactgctaagaaagaaaatcagatcctgtcattccccttttc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            91666 425 -    750284 tgcccactgcctatttgacatctccactagggatatttaaaaagaatctgaaatttaatttctgattccctttgcttccccaaagccttcaaatctgcttctcccttagtcttcccatctcagtatctgcagttgctcaagac--aaaaacctggaagtccttctttatcctcatttt----catgtgccaattgcaagccatcagtgatctcattttctctaccttcaaaatacatcacgcttctggtcctgtctcaccacctccagctctagcaccctactcttagcaactcttatttctcccctagactactgaaacagcctccgattgctctctctgctccctttcttgcccactccccaccatttattctctacttagcaagtaaactgctaagaaagaaaatcagatcctgtcattccccttttc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1339329 427 -   1771730 tgcccaccgcctatttgacatctccactaggaatatttaaaaagaattgaaaatttaatttctgattcccttcgcctcccccaagccttcaaacctgcttctcccctagtcttcccatctcagtatttgcagttgcttaagacaaaaaaacctggaagtccttctttatcctcacttt----catgtgccaactgcaagccatcagtgatctcattttctctaccttcaaaatacatcacacttctggtcctgtctcaccacctccagctctagcaccctactcttagcaactcttatttctcccctagactactgaaatagcctcggactgctctctctgctccctttcttgcccactccccatcatttattctctacttagcaggtaaactgctaagaaagaaaatcagatcctgtcattccccttttc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      39025 424 -    566255 tgcccactgcctatttgacatctccactaggaatatttaaaaagaatctaaaatttaatttctgattcccttcacctccccaaagccttcaaatctgcttctcccctagtcttcccatctcagtatttgcagttgctcaacac--aaaaacctggaagtccttctttatccctacttt----ca-gtgccaactgcaagccatcagtgatctcattttctctaccttcaaaatacatcacgcttctggtcctgtctcaccacctccagttctagcaccctactcttaacaactcttatttctcccctagactactgaaatagcctcggactgctctctctgctccctttcttgcccactccccatcatttattctctacttagcaggtaaactgctaagaaagaaaatcagatcctgtcattccccttttc
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     685574 427 -   1411461 tacccacagcctatttgacatctccactagggatatttaaaaagaatctcaaacttaatttctggttcccctaccttccccaacccctccaaatctgcttctctcccagtcttcccatcatggaattcccagtggctcaggac--aaaaacctggaagtccttctttat--ttgcttccttttaggtgccaagtacaaaccatcagtgatctcattttctctaccttcaaaatatatcctgtttctggccccatctcaccacctccacctctagcaccctactctgagcaactcttatttctcccctagactattgagatagcctctgactgctctctctgcttcctttcttgcccaccctccaccattcattctctacttagtaggtaaacttctaaaaaaggaagtcagctcttgtcattcccctgctc
i proCoq1.NW_012149775v1   I 17 C 0
s otoGar3.GL873550           702745 393 +  18854210 ----cgctgccca----------ccactaggggtatttaagaagaatctcaaacttaacttctggtt-ccctgctt---ccaacccttcc-aatctgcttctctccca-ttttcccatcacagaattcccagttgctcaagac--aaaaacctggaagttcttctttgt--ttg----cttttaggtagcaagtacaaactatcagcaatctcattttctctgccttcaaaatatatcctgtttctggcccca-ctcaccacctctacctctactaccctactctgaacaactctaattattctcctacactactgaaataggctctggctg--ctggctgcttcctttcttgcccaccctccatcacttattccctacttagtaggtaaacttctaaaa-------tccacccttgtcactcctctgttc
i otoGar3.GL873550         C 0 I 410
e micMur3.chr6               653228 1310 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e canFam3.chr12              378003   0 +  72498081 C

a score=864101.000000
s hg38.chr6_GL000254v2_alt  1894708 68 +   4827813 aaaacctacccttggcttctcatgagacttggaataaaatccaaaatggctgtcacagcctcagggct
s panTro5.chr6             30740378 68 + 175400573 aaaacctacccttggcttctcatgagacttggaataaaatccaaaatggctgtcacagcctcagggct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31164027 68 + 173848474 aaaacctacccttggcttctcatgagacttggaataaaatccaaaatggctgtcacagcctcagggct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     671003 68 +   2037526 aaaacctacccttggcttctcatgagacttggaataaaatccaaaatggctgtcacagcctcagggct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75339663 68 + 122973662 aaaacctacccttggcttctcatgagacttggaataaaatccaaaatggctgtcacagcctcagggct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31251099 68 + 172585720 agaagctacccttggcttctcatgagacttggaataaaatccaaaatggctgtcacagcctcagggct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30540106 68 - 170955103 agaagctacccttggcttctcatgagacttggaataaaatccaaaatggctgtcacagcctcagggct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     836398 68 +   1495729 agaagctacccttggcttctcatgagacttggaataaaatccaaaatggctgtcacagcctcagggct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      59528 68 -    811324 agaagctacccttggcttctcatgagacttggaataaaatccaaaatggctgtcacagcctcagggct
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30090056 68 -  71996105 agaagctacccttggcttctcatgagacttggaataaaatccaaaatggctgtcacagcctcagggct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      96838 68 +    779361 agaagctacccttggcttctcatgagacttggaataaaatccaaaatggctgtcacagcctcagggct
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     760254 68 -   1829203 aaaagctacccttggcttctcatgagacttggaataaaatccaaaatggctgtcacagcctcagggct
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30920828 68 + 171630274 aaaacctacccttggcttctcatgagacttggaataaaatccaaaatgcctatcacagcctcaggact
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            92091 68 -    750284 aaaacctacccttggcttctcatgagtcttggaataaaatccaaaatgcctatcacagcctcaggact
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1339756 68 -   1771730 aaaacctacccttggcttctcatgagacttggaataaaatccaaaatgcctatcacagcctcaggact
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      39449 68 -    566255 aaaacctaaccttggcttctcatgagacttggaataaaatccaaaatgcctatcacagcttcaggact
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     686001 68 -   1411461 aaaacctaccattggcttctcaagagacttagaataaaatccaaagtgcctgtcacagccacaagacc
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           703548 63 +  18854210 aaaacctaccactggcttctcaggagact-----taaaatccaaaatgcctgtcatagccataagacc
i otoGar3.GL873550         I 410 C 0
e micMur3.chr6               653228 1310 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e canFam3.chr12              378003  0 +  72498081 C

a score=305086.000000
s hg38.chr6_GL000254v2_alt  1894776 22 +   4827813 ctacatgatgtgggccctggtg
s panTro5.chr6             30740446 22 + 175400573 ctacatgatgtgggccctggtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31164095 22 + 173848474 ctacatgatgtgggccctggtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     671071 22 +   2037526 ctacatgatgtgggccctggtg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75339731 22 + 122973662 ctacacgatgtgggccctggcg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31251167 22 + 172585720 ctacatgatgtgggccctggcg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30540174 22 - 170955103 ctacatgatgtgggccctggcg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     836466 22 +   1495729 ctacatgatgtgggccctggcg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      59596 22 -    811324 ctacatgatgtgggccctggcg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30090124 22 -  71996105 ctacatgatgtgggccctggcg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      96906 22 +    779361 ctacatgatgtgggccctggcg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     760322 22 -   1829203 ctacatgatgtgggccctggtg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30920896 22 + 171630274 ctacatgatgtgggccctggcg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            92159 22 -    750284 ctacatgatgtgggccctggcg
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1339824 22 -   1771730 ctacatgatgcgggccctggcg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      39517 22 -    566255 ctacatgatgtggaccctggca
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               654538 22 + 123392446 ctacatgatatggctcctggag
i micMur3.chr6             I 1310 C 0
s proCoq1.NW_012149775v1     686069 22 -   1411461 ctacatgatacggctcctggtc
i proCoq1.NW_012149775v1   C 0 I 69
s otoGar3.GL873550           703611 22 +  18854210 ctatgtgatgtggctcctggaa
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58999825 3677 -  94987271 I
e canFam3.chr12              378003  0 +  72498081 C

a score=203375.000000
s hg38.chr6_GL000254v2_alt  1894798 16 +   4827813 atcttgctgacctcat
s panTro5.chr6             30740468 16 + 175400573 atcttgctgacctcat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31164117 16 + 173848474 atcttgctgacctcat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     671093 16 +   2037526 atcttgctgacctcat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75339753 16 + 122973662 atcttgctgacctcat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31251189 16 + 172585720 atcttgctgacctcat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30540196 16 - 170955103 atcttgctgacctcat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     836488 16 +   1495729 atcttgctgacctcat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      59618 16 -    811324 atcttgctgacctcat
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30090146 16 -  71996105 atcttgctgacctcat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      96928 16 +    779361 atcttgctgacctcat
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     760344 16 -   1829203 atcttgctgacctcat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30920918 16 + 171630274 atcttgatgacctcat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            92181 16 -    750284 atcttgatgacctcat
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1339846 16 -   1771730 atcttgatgacctcat
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      39539 16 -    566255 atcttgatgacctcat
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               654560 16 + 123392446 accttcctgacctcat
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           703633 16 +  18854210 accttcctgagctcac
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     686091 69 -   1411461 I
e canFam3.chr12              378003  0 +  72498081 C

a score=541486.000000
s hg38.chr6_GL000254v2_alt  1894814 51 +   4827813 ccccagtactttatcctggctcccatactccaatccc----ctgggcactcttgc
s panTro5.chr6             30740484 51 + 175400573 ccccagtactttatcctggctcccatactccaatccc----ctgggcactcttgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31164133 51 + 173848474 ccccagtactttatcctggctcccatactccaatccc----ctgggcactcttgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     671109 51 +   2037526 ccccagtacttcatcctggctcccatactccaatccc----ctgggcactcttgc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75339769 51 + 122973662 ctccagtactctaacctggctcccatactccaatccc----ctgggcactcttgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31251205 51 + 172585720 tcccaatactctatcctggctcccatacttcaatctt----ccaggcactcttgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30540212 51 - 170955103 tcccaatactctatcctggctcccatacttcaatctt----tcaggcactcttgc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     836504 51 +   1495729 tcccaatactctatcctggctcccatacttcaatctt----ccaggcactcttgc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      59634 51 -    811324 tcccaatactctatcctggctcccatacttccatctt----ccaggcactcttgc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30090162 51 -  71996105 tcccaacactctatcctggctcccatacttcaatctt----ccaggcactcttgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      96944 51 +    779361 tcccaatactctatcctggctcccatacttcaatctt----ccaggcactcttgc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     760360 51 -   1829203 tcccaatactctatcctggctcccatacttcaatcct----ccaggcactcttgc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30920934 51 + 171630274 ccgcaatactctatcctgcctctcatactccaattcc----ctgggcactcttgc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            92197 51 -    750284 cccgaatactctatcctgcctcccatactccaatccc----ctgggcactcttgc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1339862 51 -   1771730 ccccaatactctatcctgcctcccatactccaatccc----ctgggcactcttgc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      39555 51 -    566255 ccccaatactctatcctgcctcccatactccaatccc----ctgggcactcttgc
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               654576 54 + 123392446 ccccaatattcttccctgccgcccacactccagtcccctggtcccatactcttg-
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           703649 34 +  18854210 ccc---------------actcccatacttcagtc------tctgacactcctgc
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              378003 44 +  72498081 ------cccccgcccatggctctcatctcccaatgct----ct-gacactctggc
i canFam3.chr12            C 0 C 0
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     686091 69 -   1411461 I

a score=2979836.000000
s hg38.chr6_GL000254v2_alt  1894865 223 +   4827813 tggtcctagaatctccaagcccgttccctcctc------------------------------aagaccctttccccacagttctgaatggctcacttcatctcatcatccagttctctcctcagggaggttttccc-tgagca-cct--ctcctctcagtcactctctat---cccctttcattgctttattgccttcactgcccct-----acatgatttcggatcacaaaatctatttactcacaagaaaat--aagctccatg
s panTro5.chr6             30740535 223 + 175400573 tggtcctagaatctccaagcccgttccctcctc------------------------------aaaaccctttccccacagttctgaatggctcacttcatctcatcatccagttatctcctcagggaggttttccc-tgagca-cct--ctcctctcagtcactctctat---cccctttcattgctttattgccttcactgcccct-----acatgattttggatcacaaaatctatttaatcacaagaaaat--aagctccatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31164184 223 + 173848474 tggtcctagaatctccaagcccgttccctcctc------------------------------aagaccctttccccacagttctgaatggctcacttcatctcatcatccagttatctcctcagggaggttttccc-tgagca-cct--ctcctctcagtcactctctat---cccctttcattgctttattgccttcactgcccct-----acatgattttggatcacaaaatctatttaatcacaagaaaat--aagctccatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     671160 223 +   2037526 tggtcctagaatctccaagcccattccctcctc------------------------------aagaccctttccccacagttctgaatggctcacttcatctcatcatccagttctctcctcagggaggttttccc-tgagca-cct--ctcctctcagtcactctctat---cccctttcattgctttattgccttcactgcccct-----acatgatttcggatcacaaaatctatttactcacaagaaaat--aagctccatg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75339820 223 + 122973662 tggtcctagaatctccaagcccattccctcctc------------------------------aagaccctttccccacagttctgaatggctcacttcatctcatcatccagttctctcctcagggaggttttccc-tgagca-cct--ctcctctcagtcactctctat---cccctttccttgctttattgccttcactgcccct-----acatgatttcggatcacaaaatctatttactcacaagaaaat--aagctccatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31251256 223 + 172585720 tggtcctagaatctccaagcccattccttcctc------------------------------aagaacctttccccacagttctgaatggctcacttcatctcatcaaccagttctctcctcagggaggttttccc-tgagca-cct--ctcctttcagtcactctctag---cccctttcgttgctttattgccttcactgcccct-----acatgatttcggatcacaaaacctatttactcacaagaaaat--aagctccatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30540263 223 - 170955103 tggtcctagaatctccaagcccattccttcctc------------------------------aagaccctttccccacagttctgaatggctcacttcatctcatcaaccagttctctcctcagggaggttttccc-tgagca-cct--ctcctttcagtcactctctag---cccctttcgttgctttattgccttcactgcccct-----acatgatttcggatcacaaaacctatttactcacaagaaaat--aagctccatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     836555 223 +   1495729 tggtcctagaatctccaagcccattccttcctc------------------------------aagaacctttccccacagttctgaatggctcacttcatctcatcaaccagttctctcctcagggaggttttccc-tgagca-cct--ctcctttcagtcactctctag---cccctttcgttgctttattgccttcactgcccct-----acatgatttcggatcacaaaacctatttactcacaagaaaat--aagctccatg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      59685 222 -    811324 tggtcctagaatctccaagcccattctttcctc------------------------------aagaccctttccccacagttctgaatggctcacttcatctcatcaaccagttctctcctcagggaggttttccc--gagca-cct--ctcctttcagtcactctctat---ccccttccgttgctttattgccttcactgcccct-----acatgatttcggatcacaaaacctatttactcacaagaaaat--aagctccatg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30090213 223 -  71996105 tggtcctagaatctccaagcccattccttcctc------------------------------aagacccttttcccacagttctgaatggctcacttcatctcatcaaccagttctctcctcagggaggttttccc-tgagca-cct--ctcctttcagtcactctctat---cccctttcattgctttattgccttcactgcccct-----acatgatttcggatcacaaaacctatttactcacaagaaaat--aagctccatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      96995 223 +    779361 tggtcctagaatctccaagcccattccttcctc------------------------------aagaccctttccccacagttctgaatggctcacttcatctcatcaaccagttctctcctcagggaggttttccc-tgagca-cct--ctcctttcagtcagtctctat---cccctttcgttgctttattgccttcactgcccct-----acatgatttcggatcacaaaacctatttactcacaagaaaat--aacctccatg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     760411 223 -   1829203 tggtcctagaatctccaagcccattccttcctc------------------------------aagaccctttccccacagttctgaatggctcacttcatctcatcaaccagttctctcctcagggaggttttccc-tgagca-cct--ctcctctcagtcactctctat---cccctttcattgctttattgccttcactgcccct-----acatgatttcggatcacaaaacctatttactcacaagaaaat--aagctccatg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30920985 223 + 171630274 tggtcccagaatctccaagctcattcccacctc------------------------------aaaatcctttccccatagctctgaatggctcacttcatctcattatccagttctctcctcagggaagttttccc-taatca-cct--ctcccctcggccactctttat---tctctttcattgctttactttcttcactgcccct-----acatgatttcagatcacaaaatctatttattcacaaaacaat--aagctccata
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            92248 226 -    750284 tggtgccagaatctccaagctcactgccacctc------------------------------aaaatcctttctccatagctctgaatggctcacttcatcccattatccagttctctcctcagggaggttttccc-tgatca-cct--ctcccctcagccactctttatccccctctttcattgctttattttcttcactgcccct-----acatgatttcagatcacaaaatctatttactcacaaaaaaat--aagctccata
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1339913 223 -   1771730 tggtcccagaatctccaagctcattcccacctc------------------------------aaaatcctttccccatagctctgaatggctcacttcatctcattatccagttctctcctcaaggaggttttccc-tgatca-cct--ctcccctcagccactctgtat---cccctttcattgctttattttcttcactgcccct-----acatgatttcagatcacaaaatctatttactcacaaaaaaat--aagctccatg
i cebCap1.NW_016107755v1   C 0 I 305
s aotNan1.NW_018511496v1      39606 221 -    566255 tggtcccagaatctccaagctcattcccacctc------------------------------aaaatccttttcccatagctctgaatggctcacttcatcccattagccagttctctcctcagggaggtcttccc-tgatta-cct--ctcccctcagccactctttat-----cccttcattgctttattttcttcactgctcct-----acatgatttcagatcacaaaatctatttactcacaaaaaaat--aagctccata
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               654630 229 + 123392446 tgctcctggaatcaccaagctcattccctcttc------------------------------aagactcttctcccacagctccaaaaggctcacttcatctcaccatccagttatctcctcagggaggttttccc-agagga-tcccacccctcccagtcactctctgt---cccctttcattgctttctttccttcactgcccttaaataatatgatttcacatcat-aaatctatttactcacagcaaaat--aagctccatg
i micMur3.chr6             C 0 I 8
s proCoq1.NW_012149775v1     686160 231 -   1411461 tggtgctggaatcaccaagctcgttcccacctc------------------------------aagacccttcccccacagctccaaatggctcacttcatctcaccatgcagttctctcctcagggacattttccc-agagga-ccgctcccctcccaatcattctttgt---cccctttcattgctttctttccttcattgcccttaaataatatgatttcccatcat-aaatctatttactcacaggaaaagaaaagctccatg
i proCoq1.NW_012149775v1   I 69 I 2
s otoGar3.GL873550           703683 196 +  18854210 tggtcct-gaatcaccaagctcatttccatcac------------------------------aagac------cCCACAGTTACAAATGGCTCACTTCATCTCATCATTCAGTTCTTTCTT----------------------------ctccttccaggtattctctat---tcccttttattgttttatttccttcattgcttctaaataatatgatctcagatcac-aaatccatttactcacaggaaaat--aaactccatg
i otoGar3.GL873550         C 0 I 292
s canFam3.chr12              378047 242 +  72498081 ttgtcccacaatcaccaagtttgttcctacattgagatctcatttaccgatcccttggcctggaaggcccttttcccgtatctccaaacggc-aacttcccctcaacattccaggctcttctcagagggggcttcccatgagaaccct--cctctctgggtcactctctac---tccctttcat-----------------tgcccctaaataataggatttcaaattcatgaattagtttacttccaaggcaat--aaactctgtg
i canFam3.chr12            C 0 C 0
e mm10.chr17               58999825 3677 -  94987271 I

a score=32548.000000
s hg38.chr6_GL000254v2_alt  1895088 7 +   4827813 --aatctac
s panTro5.chr6             30740758 7 + 175400573 --aatctac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31164407 7 + 173848474 --aatctac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     671383 7 +   2037526 --aatctac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75340043 7 + 122973662 --aatgcac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31251479 7 + 172585720 --aatatag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30540486 7 - 170955103 --aatatac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     836778 7 +   1495729 --aatatac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      59907 7 -    811324 --aatatac
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30090436 7 -  71996105 --aatatac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      97218 7 +    779361 --aatatac
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     760634 7 -   1829203 --aatgtac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30921208 7 + 171630274 --aatgtac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            92474 7 -    750284 --aatgtac
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      39827 7 -    566255 --aatgtat
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               654867 7 + 123392446 --cttttgg
i micMur3.chr6             I 8 C 0
s proCoq1.NW_012149775v1     686393 7 -   1411461 --catatag
i proCoq1.NW_012149775v1   I 2 C 0
s otoGar3.GL873550           704171 7 +  18854210 --caccaga
i otoGar3.GL873550         I 292 C 0
s canFam3.chr12              378289 7 +  72498081 agaatag--
i canFam3.chr12            C 0 C 0
e mm10.chr17               58999825 3677 -  94987271 I
e cebCap1.NW_016107755v1    1340136 305 -   1771730 I

a score=1976324.000000
s hg38.chr6_GL000254v2_alt  1895095 150 +   4827813 agacctttttgccatttccacagcagtatg-tcccatccct----agaatatctggcacctggttaagtgttcagtacatatttgttgaatgggtaaatGAATGAGAGCTGGAGGGAAATCCAAACTCAGGGGTGCCTGTGCCACAGCAAACACT
s panTro5.chr6             30740765 150 + 175400573 agacctttttgccatttccacagcagtatg-tcccatcccc----agaatatctggcacctggttaagtgttcagtacatatttgttgaatgggtaaatGAATGAGAGCTGGAGGGAAATCCAAACTCAGGGGTGCCTGTGCCACAGCAAACACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31164414 150 + 173848474 agacctttttgccatttccacagcagtatg-tcccatcccc----agaatatctggcacctggttaagtgttcagtacatatttgttgaatgggtaaatGAATGAGAGCTGGAGGGAAATCCAAACTCAGGGGTGCCTGTGCCACAGCAAACACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     671390 150 +   2037526 agacctttttgccatttccacagcagtatg-tcccatccct----agaatatctggcacctggttaagtgttcagtacatatttgttgaatgggtaaatGAATGAGAGCTGGAGGGAAATCCAAACTCAGGGGTGCCTGTGCCACAGCAAACACT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75340050 150 + 122973662 agacctttttgccatttccacagcagtatg-tcccatccct----agaatatctggcacctggttaagtgttcagtacatatttgttgaatgggtaaatGAATGAGAGCTGGAGGGAAATCCAAACTCAGGGGTGCCTGTGCCACAGCAAACACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31251486 145 + 172585720 agacctttctgccattttcacagcagtatg-tctcatccct----agaatatctggcacctgg-taagcgttcagtacatatttgttgaatgggtaaatGAATGAGAGCTGGAAGGAAATCCAAACTCAGAGGTGCCTGTGCCACAGCAAA----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30540493 145 - 170955103 agacctttctgccattttcacagcagtatg-tctcatccct----agaatatctggcacctgg-taagcgttcagtacatatttgttgaatgggtaaatGAATGAGAGCTGGAAGGAAATCCAAACTCAGAGGTGCCTGTGCCACAGCAAA----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     836785 145 +   1495729 agacctttctgccattttcacagcagtatg-tctcatccct----agaatatctggcacctgg-taagcgttcagtacatatttgttgaatgggtaaatGAATGAGAGCTGGAAGGAAATCCAAACTCAGAGGTGCCTGTGCCACAGCAAA----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      59914 145 -    811324 agacctttctgccattttcacagcagtatg-tcccatccct----agaatatctggcacctgg-taagcgttcagtacatatttgttgaatgggtaaatGAATGAGAGCTGGAAGGAAATCCAAACTCAGAGGTGCCTGTGCCACAGCAAA----
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30090443 145 -  71996105 agacctttctgccattttcacagcagtatg-tcccatccct----agaatatctggcacctgg-taagcgttcagtacatatttgttgaatgggtaaatGAATGAGAGCTGGAAGGAAATCCAAACTCAGAGGTGCCTGTGCCACAGCAAA----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      97225 145 +    779361 aaacctttctgccattttcacagcagtatg-tcccatccct----agaatatctggcacctgg-taagcgttcagtacatatttgttgaatgggtaaatGAATGAGAGCTGGAAGGAAATCCAAACTCAGAGGTGCCTGTGCCACAGCAAA----
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     760641 145 -   1829203 agacctttctgccattttcacagcagtatg-tcccatccct----agaatatctggcacctgg-taagcggtcagtacatatttgttgaatgggtaaatGAATGAGAGCTGGAAGGAAATCCAAACTCAGAGGTGCCTGTGCCACAGCAAA----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30921215 149 + 171630274 agaattttttgccattttcatagcagtatg-tcccattcct----agaatatctggcacctgg-taagtgctcagtacatatttgttgaacggctaaatgaatGAGAGCTGGAGGGAAATACAAACGCAGGGGTACCTGTGCCACAGCAAACACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            92481 149 -    750284 agacctttttgccattttcacagcagtatg-tcccattcct----agaatatctgacacctgg-taagtgttcagtacatatttgttgaatggctaaatgaatGAGAGCTGGAGGGAAATACAAACTCAGGGGTACCTGTGCCACAGCAAACACA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1340441 149 -   1771730 agacctttttgccattttcacagcagtatg-tcccattcct----agaatatctgacacctgg-taagtgttcagtacatatttgttgaacggctaaatgaatGAGAGCTGGAGGGAAATACAAACTCGGGGGTACCTGTGCCACAGCAAACACA
i cebCap1.NW_016107755v1   I 305 C 0
s aotNan1.NW_018511496v1      39834 149 -    566255 agccctttttgccattttcacagcagtatg-tcccattcct----agaatatctgacacctgg-taagtgttcagtacatattcgttgaatggctaaatgaatGAGAGCTGGAGGGAAATATAAACTCAGGGGTACCTGTGCCACAGCAAACACA
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               654874 152 + 123392446 ggacctttttgccattttcacagtggcaca-tcccatccctcc-aacagcacctggcacctgg-caggtgctcagtaaatatctgctgaatggataaatGAAGGAGAGCTGCAGGGAAATCCAAACTCAGGGCTGCCCGTGCCACAGCAAACACT
i micMur3.chr6             C 0 I 88
s proCoq1.NW_012149775v1     686400 152 -   1411461 ggacctttttgccattttcacagtggcacg-tcccatccctcc-aacagcacctggcacctgg-tgggtgctcagtaaatatctattgaatggatacatGAGGGAGAGCTGCAGGGAAATCCAAACTCGGGGCTGCCCGTGTCGCAGCACACACT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           704178 153 +  18854210 gcccctttttgccattttcacagtggcatgttcccatccctct-aatagcacctggcatctcc-taggtacttggtaaatatttgttgaatggataaaCAAATGAGAGCTTCAAGGAAATCCAAACTCAGGACTGCCTGTGTCACAACAAACACT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              378296 114 +  72498081 ggacttttctgccactttcatggcagcata-acctgcccctgtaaacagcacctggcacataa-caa-----------atattTGCC----------------------------AATATCTAAACTCAGGACTGCCTGTGCCACAGAAAATGTT
i canFam3.chr12            C 0 C 0
e mm10.chr17               58999825 3677 -  94987271 I

a score=205452.000000
s hg38.chr6_GL000254v2_alt  1895245 21 +   4827813 ----------------------------------CTCCCTCTCACACCA---------CCTGGA
s panTro5.chr6             30740915 21 + 175400573 ----------------------------------CTCCCTCTCACACCA---------CCTGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31164564 21 + 173848474 ----------------------------------CTCCCTCTCACACCA---------CCTGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     671540 21 +   2037526 ----------------------------------CTCCCTCTCACACCA---------CCTGGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75340200 21 + 122973662 ----------------------------------CTCCCTCTCACACCA---------CCTGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31251631 21 + 172585720 ----------------------------------CTCCCTCTCACAGCA---------CCTGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30540638 21 - 170955103 ----------------------------------CTCCCTCTCACACCA---------CCTGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     836930 21 +   1495729 ----------------------------------CTCCCTCTCACACCA---------CCTGGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      60059 21 -    811324 ----------------------------------CTCCCTCTCACACCA---------CCTGGA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30090588 21 -  71996105 ----------------------------------CTCCCTCTCACACCA---------CCTGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      97370 21 +    779361 ----------------------------------CTCCCTCTCACACCA---------CCTGGA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     760786 21 -   1829203 ----------------------------------CTCCCTCTCACACCA---------CCTGGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30921364 21 + 171630274 ----------------------------------CTCCTTCTCACACCA---------TGTGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            92630 21 -    750284 ----------------------------------CTCCTTCTCATACCA---------TGCAGA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1340590 21 -   1771730 ----------------------------------CTCCCTCTCACACCA---------TGCGGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      39983 21 -    566255 ----------------------------------CTCCCTCTCACACCA---------TGCGGA
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     686552 21 -   1411461 ----------------------------------GGGCTCAGCACACCA---------CCCCAC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           704331 21 +  18854210 ----------------------------------GGACCTATCATACCA---------CTCCAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              378410 64 +  72498081 CTCCTATgggacacttgagtggctcagcggttgtctgccttccaccccagggcatgatcctgga
i canFam3.chr12            C 0 I 196
e micMur3.chr6               655026 88 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I

a score=770271.000000
s hg38.chr6_GL000254v2_alt  1895266 76 +   4827813 ATAGAGATCAGCTAGAGCAGAGGCTGCTAAGAGAGGGAACAGA-GGCTCCTTGTGACAGGGAGACTAGGATCAGA----AG
s panTro5.chr6             30740936 76 + 175400573 ATAGAGATCAGCTAGAGCAGAGGCTGCTAAGAGAGGGAACAGA-GGCTCCTTGTGACAGGGAGACTAGGATCAGA----AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31164585 75 + 173848474 ATAGAGATCAGCTAGAGCAGAGGCTGCTAAGAGAGGGAACAGA-GGCTCCTTGTGACAGGGAGACTAGGATCAGA----A-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     671561 76 +   2037526 ATAGAGATCAGCTAGAGCAGAGGCTGCTAAGAGAGGGAACAGA-GGCTCCTTGTGACAGGGAGACTAGGATCAGA----AG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75340221 75 + 122973662 ATAGAGACCAGCTAGAGCAGAGGCTGCTAAGAGAGGGAACAGA-GGCTCCTTGTGACA-GGAGCCTAGGATCAGA----AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31251652 76 + 172585720 ATAGAGACCAGCTAAAGCAGAGCCTGCTAAGAGAGGGAACAGA-GGCTCCTTGTGAGGGGAAGCCTAGGATCAGA----AG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30540659 76 - 170955103 ATAGAGACCAGCTAAAGCAGAGCCTGCTAAGAGAGGGAACAGA-GGCTCCTTGTGAGGGGAAGCCTAGGATCAGA----AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     836951 76 +   1495729 ATAGAGACCAGCTAAAGCAGAGCCTGCTAAGAGAGGGAACAGA-GGCTCCTTGTGAGGGGAAGCCTAGGATCAGA----AG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      60080 76 -    811324 ATAGCGACCAGCTAAAGCAGAGCCTGCTAAGAGAGGGAACAGA-GGCTCCTTGTGAGGGGAAGCCTAGGATCAGA----AG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30090609 76 -  71996105 ATAGAGACCAGCTAAAGCAGAGCCTGCTAAGAGAGGGAACAGA-GGCTCCTTGTGAGGCGAAGCCTAGGATCAGA----AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      97391 76 +    779361 ATAGCGACCAGCTAAAGCAGAGCCTGCTAAGAGAGGGAACAGA-GGCTCCTTGTGAGGGGAAGCCTAGGATCAGA----AG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     760807 76 -   1829203 ATAGAGACCAGCTAGAGCAGAGCCTGCTAAGAGAGGGAATAGA-GGCTCCTTGTGAGGGGGAGCCTAGGATCAGA----AG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30921385 76 + 171630274 ATAGAGACCAGCTAGAGCAGAGGCTGCCAAGAGAGGGAACAGA-GACTCCTTGTGAGGGGGAGCCTATGATCAGA----AG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            92651 76 -    750284 ATAGAGACCAACTAGAGCAGAGGCTGCCAAGAGAGGGAACAGA-GGCTCCTTGTGAGGGGGAGCCTAGGATCAGA----AG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1340611 76 -   1771730 ATAGAGACCAGCTAGAGCAGAGGCTGCCAAGAGAGGGAACAGA-GGCTCCTTGTGAGGGGGAGCCTAGGATCAGA----AG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      40004 80 -    566255 ACAGAGGCCAGCTAGAGCAGAGGCTGCCAAGAGAGGGAACAGA-GGCTCCTTGTGAGGGGGAGCCTAGGATCAGAAGTCAG
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     686573 50 -   1411461 ACAGAGACAAGCTAGTGCAGAGCCCATGAGAGAGGGGGACAGA-GGCCCCT------------------------------
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           704352 50 +  18854210 ACAGAGAGAAGGTAATGCAGAGGCCACT-GAGAAAGAAACAGAGGGCCCTT------------------------------
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               655026 88 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e canFam3.chr12              378474 196 +  72498081 I

a score=14655.000000
s hg38.chr6_GL000254v2_alt  1895342 2 +   4827813 TC-
s panTro5.chr6             30741012 2 + 175400573 TC-
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     671637 2 +   2037526 TC-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75340296 2 + 122973662 TC-
i nomLeu3.chr1a            C 0 M 100
s rheMac8.chr4             31251728 2 + 172585720 TC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30540735 2 - 170955103 TC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     837027 2 +   1495729 TC-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      60156 2 -    811324 TC-
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30090685 2 -  71996105 TC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      97467 2 +    779361 TC-
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     760883 2 -   1829203 TC-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30921461 2 + 171630274 TC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            92727 2 -    750284 TC-
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1340687 2 -   1771730 TC-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      40084 2 -    566255 TC-
i aotNan1.NW_018511496v1   C 0 C 0
s canFam3.chr12              378670 2 +  72498081 -CT
i canFam3.chr12            I 196 C 0
e micMur3.chr6               655026 88 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     686623 0 -   1411461 C
e otoGar3.GL873550           704402 0 +  18854210 C
e panPan2.chr6             31164660 0 + 173848474 C

a score=138852.000000
s hg38.chr6_GL000254v2_alt  1895344 17 +   4827813 AGGGAAGGGACAGCC-GG
s panTro5.chr6             30741014 17 + 175400573 AGGGAAGGGACAGCC-GG
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     671639 17 +   2037526 AGGGAAGGGACAGCC-GG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31251730 17 + 172585720 AGGGAAGGGACAGCC-AG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30540737 17 - 170955103 AGGGAAGGGACAGCC-AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     837029 17 +   1495729 AGGGAAGGGACAACC-AG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      60158 17 -    811324 AGGGAAGGGACAGCC-AG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30090687 17 -  71996105 AGGGAAGGGACAGCC-AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      97469 17 +    779361 AGGGAAGGGACAGCC-AG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     760885 17 -   1829203 AGGGAAGGGACAGCC-AG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30921463 18 + 171630274 AGGGAAGGGACAGCCTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            92729 18 -    750284 AGGGAAGGGACAGCCTGG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1340689 18 -   1771730 AGGTAAGGGACAGCCTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      40086 18 -    566255 AGAGAAGGGACAGCCTGG
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     686623 15 -   1411461 --GGGAGGGAGGGCC-AG
i proCoq1.NW_012149775v1   C 0 I 1
s otoGar3.GL873550           704402 11 +  18854210 --GGGAGGGACAG-----
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              378672 17 +  72498081 TGGCAAGAGAGAACC-AG
i canFam3.chr12            C 0 C 0
e micMur3.chr6               655026 88 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e nomLeu3.chr1a            75340298 100 + 122973662 M
e panPan2.chr6             31164660  0 + 173848474 C

a score=920546.000000
s hg38.chr6_GL000254v2_alt  1895361 89 +   4827813 -GTGAAATGACTGG-AAAGAGGAGCAATCACTCAGCAGTAAGGCAGGTTCTTCCAAAGACAAAAAGGACAC--AGAGATAAGTCA-GGGCACTT-
s panTro5.chr6             30741031 91 + 175400573 -GTGAAATGACTGG-AAAGAGGAGCAATCACTCAGCAGTAAGGCAGGTTCTTCCAAAGACAAAAAGGACACTGAGAGATAAGTCA-GGGCACTT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31164660 91 + 173848474 -GTGAAATGACTGG-AAAGAGGAGCAATCACTCAGCAGTAAGGCAGGTTCTTCCAAAGACAAAAAGGACACTGAGAGATAAGTCA-GGGCACTT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     671656 91 +   2037526 -GTGAAATGACTGG-AAAGAGGAGCAATCACTCAGCAGTAAGGCAGGTTCTTCCAAAGACAAAAAGGACACTGAGAGATAAGTCA-GGGCACTT-
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31251747 80 + 172585720 -ATGAAATGACTAG-AAAGAGGAGCAA-----------TGAGGCAGGTTCTTCCAAAGACAAAAAGGACACTAAGAGATAAGTCA-GGGCACTT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30540754 80 - 170955103 -ATGAAATGACTAG-AAAGAGGAGCAA-----------TGAGGCAGGTTCTTCCAAAGACAAAAAGGACACTAAGAGATAAGTCA-GGGCACTT-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     837046 80 +   1495729 -ATGAAATGACTAG-AAAGAGGAGCAA-----------TGAGGCAGGTTCTTCCAAAGACAAAAAGGACACTAAGAGGTAAGTCA-GGGCACTT-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      60175 80 -    811324 -ATGAAATGACTGG-AAAGAGGAGCAA-----------TGAGGCAGGTTCTTCCAAAGACAAAAAGGACACTAAGAGATAAGTCA-GGGCACTT-
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30090704 80 -  71996105 -ATGAAATGACTGG-AAAGAGGCGCAA-----------TGAGGCAGGTTCTTCCAAAGACAAAAAGGACACTAAGAGACAAGTCA-GGTCACTT-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      97486 80 +    779361 -ATGAAATGACTGG-AAAGAGGAGCAA-----------TGAGGCAGGTTCTTCCAAAGACAAAAAGGACACTAAGAGATAAGTCA-GGGCACTT-
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     760902 80 -   1829203 -GTGAAATGACTGG-AAAGAGGAGCAA-----------TGAGGCAGGTTCTTCCAAAGACAAAAAGGACACTAAGAGATAAGTCA-GGGCACTT-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30921481 91 + 171630274 -GGGAAATGACTGG-AACGAGGAGCAATCACTCAGCAGTAAGGCAGGTTTTTCAAAAGACAAGAAGGACACTGAGAGATACATCA-GGGCACTT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            92747 89 -    750284 -GTGAAATGACTGG-AACAAGGAGCAATCACTCGGCAGTAAGGCAGGTTTTTCCAAAGACAAAAAGGATAC--AGAGATAAGTCA-GAGCACAT-
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1340707 91 -   1771730 -GTGAAATGACTGG-AACAAGGAGCAATCACTCAGCAGTAAGGCAAGTTTTTCCAAAGACAAAAAGGACACTGAGAGATATGTCA-GGGCACTT-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      40104 91 -    566255 -GTGAAATGACTAG-AATGAGGAGCAATCACTCAGCAGTAAGATAGGTTTTTCCAAAGACAAAAAGGACACTGAGAGACAAGTCA-GGGCACTT-
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               655114 92 + 123392446 -GTGAGATGACTGG-AATAGAGGGCAGTCACTCAGCAGTCAGGCAGCTTTTCCTCAAGACAAAAAGGACACCAAAAAACAAGTCAGGGGTACTT-
i micMur3.chr6             I 88 C 0
s proCoq1.NW_012149775v1     686639 93 -   1411461 -GTGACATGACTGGAAATAGGGGGCAGTCACTCAGCAGTCAGGCAGCATTTTCCCAAGACAAAAAGGACACCGAAAGACAAGTGAGGGGCACTA-
i proCoq1.NW_012149775v1   I 1 C 0
s otoGar3.GL873550           704413 83 +  18854210 --TGAAATGACCAT-AAAGAGGACTAGTTAC--------CAGGCAGCTTTTTCCCAAGACAAAAAGGACACTGAAAGACAAATCAGGGGCTCTT-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              378689 92 +  72498081 GAAGAAAGGACTGG-AAAG-GGCGCCATTTGTCAGCAGTCAGGTAGGTTGTTTCCAGGACAAAAATAAGACTGAAAGGTAAGTCA-GGAATGTTT
i canFam3.chr12            C 0 C 0
e mm10.chr17               58999825 3677 -  94987271 I
e nomLeu3.chr1a            75340298 100 + 122973662 M

a score=1848022.000000
s hg38.chr6_GL000254v2_alt  1895450 137 +   4827813 CCAAGGAACCCAACTACCTACTCCACACTCCCAAATTTATTCTGGGTTGGGCCCTTTTTGGTTCCAATATCACCTCAGATACCATAAC---------------------------------------TTGTCCAAGGTCTCTTCTTACCTCTCCCACCCTAAATGAAGACGGGCCC
s panTro5.chr6             30741122 137 + 175400573 CCAAGGAGCCCAACTACCTACTCCACACTCCCAAATTTATTCTGGGTTGGGCCCTTTTTGGTTCCAATATCACCTCAGGTACCACAAC---------------------------------------TTGTCCAAGGTCTCTTCTTACCTCTCCCACCCTAAATGAAGACGGGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31164751 137 + 173848474 CCAAGGAGCCCAACTACCTACTCCACACTCCCAAATTTATTCTGGGTTGGGCCCTTTTTGGTTCCAATATCACCTCAGATACCACAAC---------------------------------------TTGTCCAAGGTCTCTTCTTACCTCTCCCACCCTAAATGAAGACGGGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     671747 137 +   2037526 CCAAGGAGCCCAACTACCTACTCCACACTCCCAAATTTATTCTGGGTTGGGCCCTTTTTGGTTCCAATATCACCTCAGATACCACAAC---------------------------------------TTGTCCAAGGTCTCTTCTTACCTCTCCCACCCTAAATGAAGACGGGCCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75340398 135 + 122973662 CCAAGGAGGCCAACTACCTACTCCATACTCCCCAA-TTATTCTGGGTTGGGGCCTTTTTGGTTCCAATATCA-CTCAGATACCACAAC---------------------------------------TTGTCCAAGGTCTCTTCTTACCTCTCCCACCCTAAATGAAGACGGGCCC
i nomLeu3.chr1a            M 100 C 0
s rheMac8.chr4             31251827 137 + 172585720 CCAAGGAGTCCAACTACCTACTCCACATTCCCTAATTTCTTCTGGGTTGGGCCTAATTTGGTTCCAATATCACCTCAGATACCACAAC---------------------------------------TTGTCCAAGGTCTCTTCTTACCTCTCCTACCCTAAATGAAGACAGGCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30540834 137 - 170955103 CCAAGGAGTCCAACTACCTACTCCACATTCCCTAATTTCTTCTGGGTTGGGCCTAATTTGGTTCCAATATCACCTCAGATACCACAAC---------------------------------------TTGTCCAAGGTCTCTTCTTACCTCTCCTACCCTAAATGAAGACAGGCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     837126 137 +   1495729 CCAAGGAGTCCAACTACCTACTCCGCATTCCCTAATTTCTTCTGGGTTGGGCCTAATTTGGTTCCAATATCACCTCAGATACCACAAC---------------------------------------TTGTCCAAGGTCTCTTCTTACCTCTCCTACCCTAAATGAAGACAGGCCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      60255 137 -    811324 CCAAGGAGTCCAACTACCTACTCCACATTCCCTAATTTCTTCTGGGTTGGGCCTAATTTGGTTCCAATATCACCTCAGATACTACAAC---------------------------------------TTGTCCAGGGTCTCTTCTTACCTCTCCTACCCTAAATGAAGACAGGCCC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30090784 137 -  71996105 CCAAGGAGTCCAACTACCTACTCCACATTCCCTAATTTCTTCTGGGTTGGGCCTAATTTGGTTCCAATATCACCTCAGATACCACAAC---------------------------------------TTGTCCAAGGTCTCTTCTTACTTCTCCTACCCTAAATGAAGACAGGCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      97566 137 +    779361 CCAAGGAGTCCAACTACCTACTCCACATTCCCTAATTTCTTCTGGGTTGGGCCTCATTTGGTTCCAATATCACCTCAGACACCACAAC---------------------------------------TTGTCCAGGGTCTCTTCTTACCTCTCCTACCCTAAATGAAGACAGGCCC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     760982 137 -   1829203 CCAAGGAGTCCAACTACGTACCCTACATTCCCTAATTTCTTCTGGGTTGGGCCCTTTTTGGTTCCAATATCACCTCAGATACCACAAC---------------------------------------TTGTCCAAGGTCTCTTCTTACCTCTCCTACCCTAAATGAAGACAGGCCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30921572 137 + 171630274 CCAAGGAGCCCAACTACATACTCCACATTCCCCTGTTTCTTCTGGGTTGGGCCCTTTTTGGTTCCAGTATCACCTCAGATACCACAAC---------------------------------------CTGGCCAAGGTCTCTTCTTAACTCTCCTATCCAAAATGAAAACAGGCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            92836 137 -    750284 CCAAGGAGCCCAACTACGTACTCTACATTCCCCAGTTTCTTCTGGTTTGGGCCCTTTTTGGTTCCAGTATCACCTCAGATACCACAAC---------------------------------------CTGGCCGAGGTCTCTCCTCACCTCTCCTACCCAAAATGAAAATAGGCCC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1340798 137 -   1771730 CCAAGGAGCCCAACTACGTACTCCACATTCCCCAGTTTCTTCTGGGTTGGGCCCTTTTTGGTTCCAGTATCACCTCAGATACCACAAC---------------------------------------CTGGCCAAGGTCTCTTCTTACCTCTCCTACCCAAAATGAAAACAGGCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      40195 137 -    566255 CCAAGGAGCCCAACTATGTACTCCACATTCCCCAGTTTCTTCTGGGTTGGGCCCTTTTTGGTTCCACTATCACCTCAGATACCACAAC---------------------------------------CTGGCCAAGGTCTCTTCTTACCTCTCCTACCCAAAATGAAAACAGGCCC
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               655206 137 + 123392446 CCAAGGATCCCAACTACCCACTTCACATTCCCCCGTGTCTTCTGGACTAGGCCTTTTCTGGTCCCAATATCATCTCAAATACCACAAT---------------------------------------TTTACCAAGGTCTCTTCTCACCTCTCCCACCCAAGATGAAAAGCGGCCC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     686732 135 -   1411461 CCAAGGAGCTCAGCCACCCACCTCACA--CTCCCGTGTCTTCTGGACTGGGCCCTTTTTGGCCCTAATATCATCTCAAATACCACAAT---------------------------------------TTTACCAAGGTCTCTTCTCACCTCTCCCACCCAAAATGAAAAGGGGCCC
i proCoq1.NW_012149775v1   C 0 I 88
s otoGar3.GL873550           704496 137 +  18854210 CCAAGGAGCCCAACTACCCATTCCACATTTCCCAGTTTTTTCTGGCCTGGACTCTTTTTGGTTCCAATATCATCTTAAATACCACAAT---------------------------------------TTTGCCAAGGTGTTTTCTCACCCGTCCCACCCAAAATGAAAAGGGGCCC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              378781 155 +  72498081 CCCAGGAGCCCAACTAACTACTCTATTCACCTTAA---------------------TTTGGTTCCCTTATCACTTCAGATAACACAACTTTGCCCACTTCACTTCTTCTCCTTTTTTTTTTTTTTTTTTTGCCCACTTCACTTCTTAACTCTCCCACCCACAAAGGAAAGGGGCCC
i canFam3.chr12            C 0 C 0
e mm10.chr17               58999825 3677 -  94987271 I

a score=690221.000000
s hg38.chr6_GL000254v2_alt  1895587 54 +   4827813 TGGGTCCTA--ATCATACATTCC-TTTTTCCTCCACTGTGAGCTGAGACAAAGCCC----T
s panTro5.chr6             30741259 54 + 175400573 TGGGTCCTA--ATCATACATTCC-TTTTTCCTCCACTGTGAGCTGAGACAAAGCCC----T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31164888 54 + 173848474 TGGGTCCTA--ATCATACATTCC-TTTTTCCTCCACTGTGAGCTGAGACAAAGCCC----T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     671884 54 +   2037526 TGGGTCCTA--ATCATACATTCC-TTTTTCCTCCACTGTGAGCTGAGACAAAGCCC----T
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75340533 54 + 122973662 TGGGTCCTA--ATCATACATTCC-TTTTTCCTCCACTGTGAGCTGAGACAAAGCCC----T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31251964 54 + 172585720 TGGGTCCTA--ATGATACATTCC-TTTTTCCTCCACTGTGAGCTGAGACAAAGCCC----T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30540971 54 - 170955103 TGGGTCCTA--ATGATACATTCC-TTTTTCCTCCACTGTGAGCTGAGACAAAGCCC----T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     837263 54 +   1495729 TGGGTCCTA--ATGATACATTCC-TTTTTCCTCCACTGTGAGCTGAGACAAAGCCC----T
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      60392 54 -    811324 TGGGTCCTA--ATGATACATTCC-TTTTTCCTCCACTGTGAGCTGAGACAAAGCCC----T
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30090921 54 -  71996105 TGGGTCCTA--ATGATACATTCC-TTTTTCCTCCACTGTGAGCTGAGACAAAGCCC----T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      97703 54 +    779361 TGGGTCCTA--ATGATACATTCC-TTTTTCCTCCACTGTGAGCTGAGACAAAGCTC----T
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     761119 54 -   1829203 TGGGTCCTA--ATGATACATTCC-TTTTTCCTCCACTGTGAGCTGAGACAAAGCCC----T
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30921709 58 + 171630274 TGGGTCCTA--ATCATACATTCC-TTTTTCCTCTACTGTGAGATGAGATAAAGCTCTTAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            92973 58 -    750284 TGGGTCCTA--ATCATACATTCC-TTTTTCCTCCACTGTGAGCTCAGATAAAGCCCTTAAT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1340935 59 -   1771730 TGGGTCCTA--ATCATACATTCCTTTTTTCCTCCACTGTGAGTTGGAATAAAGCCCTTAAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      40332 58 -    566255 TGGGTCCTA--ATCATACATTCC-TTTTTCCTCTACTGTGAGCTGAGATAAAGCCCTTAAT
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               655343 56 + 123392446 TGGGCCCCCTACTCATACATTCA-TTTTTCCCCCACTGAGAGTTAAGACAAAGCCC----T
i micMur3.chr6             C 0 I 831
s otoGar3.GL873550           704633 54 +  18854210 TGGGCCCTC--CTCATACATTCC-TTTTTCCCACACAAAGAATTGAGACAACCCCC----C
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              378936 54 +  72498081 TGGGCCCTA--ATTCTACATTCC-TTTCTTCCCCACGAAGAGCAGAGACAAGGCTC----T
i canFam3.chr12            C 0 C 0
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     686867 88 -   1411461 I

a score=31399.000000
s hg38.chr6_GL000254v2_alt  1895641  3 +   4827813 ---TAA----
s panTro5.chr6             30741313  3 + 175400573 ---TAA----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31164942  3 + 173848474 ---TAA----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     671938  3 +   2037526 ---TAA----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75340587  3 + 122973662 ---TAA----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31252018  3 + 172585720 ---TAA----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30541025  3 - 170955103 ---TAA----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     837317  3 +   1495729 ---TAA----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      60446  3 -    811324 ---TAA----
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30090975  3 -  71996105 ---TAA----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      97757  3 +    779361 ---TAA----
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     761173  3 -   1829203 ---TAA----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30921767  3 + 171630274 ---TAA----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            93031  3 -    750284 ---TAA----
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1340994  3 -   1771730 ---TAA----
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      40390  3 -    566255 ---TAA----
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           704687  3 +  18854210 ---TAA----
i otoGar3.GL873550         C 0 I 2218
s canFam3.chr12              378990 10 +  72498081 TTTTAATTCA
i canFam3.chr12            C 0 C 0
e micMur3.chr6               655399 831 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     686867 88 -   1411461 I

a score=355701.000000
s hg38.chr6_GL000254v2_alt  1895644 32 +   4827813 GAGGAGATTCTCCTTGGCAACAAACTT-AAAGG
s panTro5.chr6             30741316 32 + 175400573 GAGGAGATTCTCCTTGGCAACAAACTT-AAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31164945 32 + 173848474 GAGGAGATTCTCCTTGGCAACAAACTT-AAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     671941 32 +   2037526 GAGGAGATTCTCCTTGGCAACAAACTT-AAAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75340590 32 + 122973662 GAGGAGATTCTCCTTGGCAACAAACTT-AAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31252021 32 + 172585720 GAGGAGATTCTCCTTGGCAACAAACTT-AAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30541028 32 - 170955103 GAGGAGATTCTCCTTGGCAACAAACTT-AAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     837320 32 +   1495729 GAGGAGATTCTCCTTGGCAACAAACTT-AAAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      60449 32 -    811324 GAGGAGATTCTCCTTGGCAACAAACTT-AAAGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30090978 32 -  71996105 GAGGAGATTCTCCTTGGCAACAAACTT-AAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      97760 32 +    779361 GAGGAGATTCTCCTTGGCAACAAACTT-AAAGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     761176 32 -   1829203 GAGGAGATTCTCCTTGGCAACAAACTT-AAAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30921770 33 + 171630274 GGAGAGATTCTCCTTGACAACAAACTTCAAAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            93034 33 -    750284 GGAGAGATTCTCCTTGACAACAAACTTAAAAGG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1340997 33 -   1771730 GGAGAGATTCTCCTTGACAACAAACTTAAAAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      40393 33 -    566255 GGAGAGATTCTCCTTGACAACAAACTCAAAAGG
i aotNan1.NW_018511496v1   C 0 C 0
s canFam3.chr12              379000 32 +  72498081 GGGTAGATTCTTCTTGACAACAAACTT-ATAAG
i canFam3.chr12            C 0 C 0
e micMur3.chr6               655399 831 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     686867 88 -   1411461 I
e otoGar3.GL873550           704690 2218 +  18854210 I

a score=39508.000000
s hg38.chr6_GL000254v2_alt  1895676 3 +   4827813 GTT
s panTro5.chr6             30741348 3 + 175400573 GTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31164977 3 + 173848474 GTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     671973 3 +   2037526 GTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75340622 3 + 122973662 GTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31252053 3 + 172585720 GTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30541060 3 - 170955103 GTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     837352 3 +   1495729 GTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      60481 3 -    811324 GTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30091010 3 -  71996105 GTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      97792 3 +    779361 GTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     761208 3 -   1829203 GTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30921803 3 + 171630274 GTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            93067 3 -    750284 GTT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1341030 3 -   1771730 GTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      40426 3 -    566255 GTT
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     686955 3 -   1411461 GTT
i proCoq1.NW_012149775v1   I 88 C 0
s canFam3.chr12              379032 3 +  72498081 GAT
i canFam3.chr12            C 0 C 0
e micMur3.chr6               655399 831 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e otoGar3.GL873550           704690 2218 +  18854210 I

a score=787320.000000
s hg38.chr6_GL000254v2_alt  1895679 58 +   4827813 AAAACCTAGAAGAATACTAATTCTTGCTGAGCTCCTACTATGATTTgataatcactgt
s panTro5.chr6             30741351 58 + 175400573 AAAACCTAGAAGGATACTAATTCTTGCTGAGCTCCTACTATGATTTGATGATCACTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31164980 58 + 173848474 AAAACCTAGAAGGATACTAATTCTTGCTGAGCTCCTACTATGATTTGATGATCACTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     671976 58 +   2037526 AAAACCTAGAAGGATACTAATTCTTGCTGAGCTCCTACTATGATTTGATGATCACTGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75340625 58 + 122973662 AAAACCTAGAAGGAAACTAATACTTGCTGAGCTCCTACTATGATTTGATGATCACTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31252056 58 + 172585720 AAAACCTAGAAGAAAACTAATACTTGCTGAGCTCCTACTACGATTTGATGATCACTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30541063 58 - 170955103 AAAACCTAGAAGAAAACTAATACTTGCTGAGCTCCTACTACGATTTGATGATCACTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     837355 58 +   1495729 AAAACCTAGAAGAAAACTAATACTTGCTGAGCTCCTACTATGATTTGATGATCACTGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      60484 58 -    811324 AAAACCTAGAAGAAAACTAATACTTGCTGAGCTCCTACTACGATTTGATGATCACTGT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30091013 58 -  71996105 AAAACCTAGAAGAAAACTAATACTTGCTGAGCTCCTACTATGATTTGATGATCACTGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      97795 58 +    779361 AAAACCTAGAAGAAAACTAATACTTGCTGAGCTCCTACTACGATTTGATGATCACTGT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     761211 58 -   1829203 AAAACCTAGAAGAAAACTAATACTTGCTGAGCTCCTACTATGATTTGATGATCACTGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30921806 58 + 171630274 AAAACCTAGAAGGAAACTAATACTTGCTGAGCTTCTACTATGAGTTGATAATCACTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            93070 58 -    750284 AAAACCTAGAAGGAAACTAATACTTGCTGAGCTCCTATTATGATTTGATGATCACTGT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1341033 58 -   1771730 AAAACCTAGAAGGAaactaatacttgctgagctcctactatgatttgatgatcactgt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      40429 58 -    566255 AAAACCTAGAAGGAaactaatacttgctgagctcctactatgatttgatgatcactgt
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     686958 58 -   1411461 AAGACCTAGAAGGAAACTAATACTTGTTGAGCTCCTACTATGACTTAATGGGCATTGT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           706908 58 +  18854210 aaGACCTAGAAGGAAACTAATACCTGCTGAGCACCTACTATGACTTAATGATCATTGT
i otoGar3.GL873550         I 2218 I 56
s canFam3.chr12              379035 57 +  72498081 AAGACTCAGAAG-ATACTGATGGTAACTAAGCTCCTGCTAGGACTTAACGGTTCCTCT
i canFam3.chr12            C 0 C 0
e micMur3.chr6               655399 831 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I

a score=256134.000000
s hg38.chr6_GL000254v2_alt  1895737 20 +   4827813 actacagactaattactaca
s panTro5.chr6             30741409 20 + 175400573 ACTACAGACTAATTACTACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31165038 20 + 173848474 ACTACAGACTAATTACTACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     672034 20 +   2037526 ACTACAGACTAATTACTACA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75340683 20 + 122973662 ACTACAGACTAATTACTACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31252114 20 + 172585720 ACTACAGACTAATTACTACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30541121 20 - 170955103 ACTACAGACTAATTACTACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     837413 20 +   1495729 ACTACAGACTAATTACTACA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      60542 20 -    811324 ACTACAGACTAATTACTACA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30091071 20 -  71996105 ACTACAGACTAATTACTACa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      97853 20 +    779361 ACTACAGACTAATTACTACg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     761269 20 -   1829203 ACTACAGACTAATTACTACA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30921864 20 + 171630274 GCTAAAGACTAATTACTACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            93128 20 -    750284 GCTACAGACTGATTACTACA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1341091 20 -   1771730 gctACAGACTAATTACTACA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      40487 20 -    566255 gctACAGACTAATTACTACA
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     687016 20 -   1411461 ACCACAGACTAATTACTACA
i proCoq1.NW_012149775v1   C 0 I 488
s canFam3.chr12              379092 20 +  72498081 ATTACAGATTGATTACCATC
i canFam3.chr12            C 0 C 0
e micMur3.chr6               655399 831 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e otoGar3.GL873550           706966 56 +  18854210 I

a score=1425554.000000
s hg38.chr6_GL000254v2_alt  1895757 147 +   4827813 attcaaatggtt----tatataaaccacttaaaaca--------------------------------------------gtgcctgttacatagtaagcaccatataaatactgagttttaACaa-------taataattgttattattgttatcactatttgtcaggcattcttacactctcttaacactattcccatca
s panTro5.chr6             30741429 147 + 175400573 ATTCAAACGGTT----Tatataaaccacttaaaaca--------------------------------------------gtgcctgttacatggtaagcaccatataaatactgagttttaacaa-------taacaattgttattattgttatcactatttgtcaggcattcttatactctcttaacactattcccatca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31165058 147 + 173848474 ATTCAAACGGTT----Tatataaaccacttaaaaca--------------------------------------------gtgcctgttacatagtaagcaccatataaatactgagttttaACaa-------taataattgttattattgttatcactatttgtcaggcattcttatactctcttaacactattcccatca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     672054 147 +   2037526 ATTCAAACGGTT----Tatataaaccacttaaaaca--------------------------------------------gtgcctgttacatagtaagcaccatataaatactgagttttaataa-------taataattgttattattgttatcactatttgtcaggcattcttacactctcttaacactattcccatca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75340703 147 + 122973662 ATtcaaatggtt----tacataaaccacttaaaaca--------------------------------------------gtgcctgttacatagtaagcaccatataaatactgagttttaACaa-------taataattgttattattgttttcactatttgtcaggcattcttacgctctctcaacactattcccatca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31252134 144 + 172585720 ATTCaaatagtt----tatataaaccacttaaaaca--------------------------------------------gtgcctgttacatagtaagcaccatataaacactaagttttaataA-------TAATAA---TTATTACTGTTATCACTATTTGTCAGATATTCTTAGGCTCTCTCAACACTATTCTCATCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30541141 144 - 170955103 ATTCaaatagtt----tatataaaccacttaaaaca--------------------------------------------gtgcctgttacatagtaagcaccatataaacactaagttttaataa-------taataa---ttattactgttatcactatttgtcagatattcttaggctctctcaacactattctcatca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     837433 138 +   1495729 ATTCAAAtagtt----tatataaaccacttaaaaca--------------------------------------------gtgcctgttacatagtaagcaccatataaacactaagttt-------------taataa---ttattACTGTTATCACTATTTGTCAGATATTCTTAGGCTCTCTCAACACTATTCTCATCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      60562 144 -    811324 ATTCAAAtagtt----tatataaaccacttaaaaca--------------------------------------------gtgcctgttacatagtaagcaccatataaacactaagttttaACAA-------TGATAA---TTATTACTGTTATCACTATTTATCAGATATTCTTAGGCTCTCTCAACACTATTCCCGTCA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30091091 144 -  71996105 actcaaatagtt----tatataaaccacttaaaaca--------------------------------------------gtacctgttacatagtaagcaccatataaacactaagttttaACAA-------TAATAA---TTATTACTGTTATCACTATTTGTCAGATATTCTTAGGCTCTCTCAACACTATTCCCGTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      97873 144 +    779361 attcaaatagtt----tatataaaccacttaaaaca--------------------------------------------gtgcctgttacatagtaagcaccatataaacactaagttttaACAA-------TGATAA---TTATTACTGTTATCACTATTTGTCAGATATTCTTAGGCTCTCTCAACACTATTCCCGTCA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     761289 147 -   1829203 ATTCaaacagtt----tatataaaccacttaaaaca--------------------------------------------gtgcctgttacatagtaagcaccatataaacactaagttttaACAA-------TAATAATTGTTATTACTGTTATCACTATTTGTCAGATATTCTTAGGCTCTCTCAACGCTATTCCCGTCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30921884 151 + 171630274 attcaaacagttaatatatataaaccacttaaaaca--------------------------------------------gtgcctggtacatagtaagcactatataaatactaagttttaACAA-------TACTAATTGTTACTATTGTTACCACTATTTGTCAGGCGTTCTTAGGCTCTCTCAATACTATCCCTGTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            93148 158 -    750284 attcaaacagttaatatatataaaccacttaaaaca--------------------------------------------gtgcctggtacatagtaaacactatataaatactaagttttaACAATAATAATTAATAATTGTTATTATTGTTACCACTATTTGTGAGGCATTCTTAGGCTCTCTCACTACTGTCCCTGTCG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1341111 151 -   1771730 attcaaacagttgatatatataaaccacttaaaaca--------------------------------------------gtgcctggtacatagtaagcactatatagatattaagttttaACAA-------TAATAATTGTTATTATTGTTACCACTATTTGTGAGGCATTCTTAGGCTCTCTCAATACTATCCCTGTCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      40507 151 -    566255 attcaaacagttaatatatataaaccacttaaaaca--------------------------------------------gtgcctagtacatagtaagcactatataaatactaagttttaACAA-------TAGTAATTGTTATTATTGTTATCACTATTTGTCAGGCATTCTTAGGCTCTCTCAATACTATCCCTGTCA
i aotNan1.NW_018511496v1   C 0 C 0
s canFam3.chr12              379112 189 +  72498081 AAAGAAACAGTTAA--GATTTATGTCATTTaaaaaaaaaaaaaaaaaaaaaaaGATTTATGTCATTTAGAATGATGCCTGGTGCCTAATACCTGGTAAGCACCATGTAAAT-TTCAATTTTAACAA-------TCATGA---TTATTACTAATAACactatttgataagtattattaggccctccctgtgctattgtcttca
i canFam3.chr12            C 0 C 0
e micMur3.chr6               655399 831 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     687036 488 -   1411461 I
e otoGar3.GL873550           706966  56 +  18854210 I

a score=1528024.000000
s hg38.chr6_GL000254v2_alt  1895904 165 +   4827813 ttcctcacatccattctttt---------tttttaaagacagggt----ctctatcagccaggctggagtgcagtggcacaatcatagctcactgcagccttgaactcttgggctcaagtgatcctcctgcctcagcctctgaagtagcagagactacaggcacataccaccacactt
s panTro5.chr6             30741576 165 + 175400573 ttcctcacatccattctttt---------tttttaaagacagggt----ctctgtcagccaggctggagtgcagtggcacaatcatagctcactgcagccttgaactcttgggctcaagtgatcctcctgcctcagcctctgaagtagcagagactacaggcacataccaccacactt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31165205 164 + 173848474 ttcctcacatccattc-ttt---------tttttaaagacagggt----ctctgtcagccaggctggagtgcagtggcacaatcatagctcactgcagccttgaactcttgggctcaagtgatcctcctgcctcagcctctgaagtagcagagactacaggcacataccaccacactt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     672201 165 +   2037526 ttcctcacattcattctttt---------tttttaaagacagggt----ctctgtcagccaggctggagtgcagcggcacaatcatagctcactgcagccttgaactcttgggctcaagtgatcctcctgcctcagcctctgaagtagctgagactacaggcacataccaccacactt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75340850 169 + 122973662 ttcctcacatccattccttt---------ttttcaaagacagggtctcactctgtcagccaggctggagtgcagtggcacaatcatagctcactgcagccttgaactcctgggctcaagtgatcctcctgcctcagcctctgaagtagcagagactacaggcacacaccaccacactt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31252278 164 + 172585720 TTCCTCACATCCAttc-------------tttttaaagacagggtctcactctgtcagccaggctggagtgcagtggcacaatcacagctcactgcagccttgaactcctgggct-aagtgatcctcctgcctcagcccctgaagtaacatggactacaggcacacaccaccacactt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30541285 164 - 170955103 ttcctcacatccattc-------------tttttaaagacagggtctcactctgtcagccaggctggagtgcagtggcacaatcacagctcactgcagccttgaactcctgggct-aagtgatcctcctgcctcagcccctgaagtaacatggactacaggcacacaccaccacactt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     837571 164 +   1495729 TTCCTCACATCCAttc-------------tttttaaagacagggtctcactctgtcagccaggctggagtgcagtggcacaatcacagctcactgcagccttgaactcctgggct-aagtgatcctcctgcctcagcccctgaagtaacatggactacaggcacacaccaccacactt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      60706 164 -    811324 TTCCTCACATCCAttc-------------tttttaaagacagggtctcactctgtcagccaggctggagtgcagtggcacaatcacagctcactgcagccttgaactcctgggct-aagtgatcctcctgcctcagcccctgaagtaacatggactacaggcacacaccaccacactt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30091235 164 -  71996105 TTcctcacatccattc-------------tttttaaagacagggtctcactctgtcagccaggctggagtgcagtggcacaatcacagctcactgcagccttgaactcctgggct-aagtgatcctcctgcctcagcccctgaagtaacatggactacaggcacacaccaccacactt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      98017 164 +    779361 TTCCTCACATCCAttc-------------tttttaaagacagggtctcactctgtcagccaggctggagtgcagtggcacaatcacagctcactgcagccttgaactcctgggct-aagtgatcctcctgcctcagcccctgaagtaacatggactacaggcacacaccaccacactt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     761436 164 -   1829203 TTTCTCACATCCAttc-------------tttttaaagacagggtctcactctgtcagccaggctggagtgcagtggcacaatcacagctcactgcagccttgaactcctgggct-aagtgatcctcctgcctcagcccctgaagtaacatggactacaggcacacaccaccacgttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30922035 174 + 171630274 TTCTTCACATCCAttctttt----ttgttgtttaaaagacagggtctcactctgtcagccaggctggagtacagtggcacaatcatagttcacagcagtcttgaactccggggctcaagtgatcctcctgccgcagcctccgaagtagttgggactataggtacacatcaccctactt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            93306 178 -    750284 TTCTTCACATCCAttctttttttgttgttgtttaaaaaacagggtctcactctgtcagccaggctggagtacagtggtacaatcatagttcactgcagtcttgaactcctgagctcaagtgatcctcctgcctctgcctccaaagtagttgggactataagcacacatcaccccactt
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1341262 178 -   1771730 TTCTTCACAACCAttctttttttgttgttgtttaaaagacagggtctcactctgtcagccaggctggagtacagtggcacaatcatagttcactgcaatcttgaactcctgggctcaagtgatcctcctgcctcagcctccgaagtagttgggactataggcacacatcacctcactt
i cebCap1.NW_016107755v1   C 0 I 360
s aotNan1.NW_018511496v1      40658 158 -    566255 TTCTTCACATCCATTCTTTTGTTGTTGTTGTCTAAAAGA--------------------caggctggagtacagtggcacaatcaaagttcactgcagtcttgaactcctgggctcaagtgatcctcctgccgcagcctccgaagtagttgggactataggcacacatcaccccactt
i aotNan1.NW_018511496v1   C 0 C 0
e micMur3.chr6               655399 831 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     687036 488 -   1411461 I
e canFam3.chr12              379301   0 +  72498081 C
e otoGar3.GL873550           706966  56 +  18854210 I

a score=26293.000000
s hg38.chr6_GL000254v2_alt  1896069  8 +   4827813 ggcta---g-tt
s panTro5.chr6             30741741  8 + 175400573 ggcta---g-tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31165369  8 + 173848474 ggcta---g-tt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     672366  8 +   2037526 ggcta---t-tt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75341019  8 + 122973662 gtcta---g-tt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31252442 12 + 172585720 ggctattttttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30541449 12 - 170955103 ggctattttttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     837735 12 +   1495729 ggctattttttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      60870  9 -    811324 ggcta---tatt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30091399  8 -  71996105 ggcta---t-tt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      98181  9 +    779361 ggcta---tatt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     761600  8 -   1829203 ggcta---t-tt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30922209  8 + 171630274 ggcta---g-tt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            93484  8 -    750284 ggcta---g-tt
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      40816  8 -    566255 ggcta---g-tt
i aotNan1.NW_018511496v1   C 0 C 0
e micMur3.chr6               655399 831 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     687036 488 -   1411461 I
e canFam3.chr12              379301  0 +  72498081 C
e otoGar3.GL873550           706966 56 +  18854210 I
e cebCap1.NW_016107755v1    1341440 360 -   1771730 I

a score=42741.000000
s hg38.chr6_GL000254v2_alt  1896077 6 +   4827813 ttcttt
s panTro5.chr6             30741749 6 + 175400573 ttcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31165377 6 + 173848474 ttcttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     672374 6 +   2037526 ttcttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75341027 6 + 122973662 ttcttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31252454 6 + 172585720 tttttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30541461 6 - 170955103 tttttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     837747 6 +   1495729 tttttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      60879 6 -    811324 tttttt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30091407 6 -  71996105 tttttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      98190 6 +    779361 tttttt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     761608 6 -   1829203 tttttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30922217 6 + 171630274 tttatt
i calJac3.chr4             C 0 I 4
s saiBol1.JH378327            93492 6 -    750284 tttttg
i saiBol1.JH378327         C 0 I 19
s aotNan1.NW_018511496v1      40824 5 -    566255 ttttt-
i aotNan1.NW_018511496v1   C 0 C 0
s canFam3.chr12              379301 6 +  72498081 ttcctt
i canFam3.chr12            C 0 C 0
e micMur3.chr6               655399 831 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     687036 488 -   1411461 I
e otoGar3.GL873550           706966 56 +  18854210 I
e cebCap1.NW_016107755v1    1341440 360 -   1771730 I

a score=12376.000000
s hg38.chr6_GL000254v2_alt  1896083 1 +   4827813 a
s panTro5.chr6             30741755 1 + 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31165383 1 + 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     672380 1 +   2037526 a
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75341033 1 + 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31252460 1 + 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30541467 1 - 170955103 a
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     837753 1 +   1495729 a
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      60885 1 -    811324 a
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30091413 1 -  71996105 a
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      98196 1 +    779361 a
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     761614 1 -   1829203 a
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30922227 1 + 171630274 a
i calJac3.chr4             I 4 C 0
s saiBol1.JH378327            93517 1 -    750284 a
i saiBol1.JH378327         I 19 C 0
s cebCap1.NW_016107755v1    1341800 1 -   1771730 a
i cebCap1.NW_016107755v1   I 360 C 0
s aotNan1.NW_018511496v1      40829 1 -    566255 a
i aotNan1.NW_018511496v1   C 0 C 0
s canFam3.chr12              379307 1 +  72498081 a
i canFam3.chr12            C 0 C 0
e micMur3.chr6               655399 831 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     687036 488 -   1411461 I
e otoGar3.GL873550           706966 56 +  18854210 I

a score=1304973.000000
s hg38.chr6_GL000254v2_alt  1896084 129 +   4827813 tcttttgtaaagatggggtttcactatgttgcccagactagtcttgagctcctggtctcaagcaatcctcccacctcagcctcccaaagcgctgggactatataggcatgagccctcacacatggccgt
s panTro5.chr6             30741756 127 + 175400573 tcttttgtaaagatggggtttcactatgttgcccagactagtcttgagctcctggtctcaagcaatcctcccacctcagcctcccaaagcgctgggactata--ggcatgagccctcacacatggccgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31165384 127 + 173848474 tcttttgtaaagatggggtttcactacgttgcccagactagtcttgagctcctggtctcaagcaatcctcccacctcagcctcccaaagcgctgggactata--ggcatgagccctcacacatggccgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     672381 127 +   2037526 tcttttgtaaagatggggtttcactatgttgcccagactagtcttgagctcctggtctcaagcaatcctcccacctcagcctcccaaagcgctgggactata--ggcatgagccctcacacatggccgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75341034 127 + 122973662 tcttttgtaaagatggggtttcactatgttgcccagactggtcttgagctcgtggtctcaagcaatcctcccacctcagcctcccaaagcactgggactata--ggcatgagccctcacacatggccct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31252461 127 + 172585720 tcttttgtaaagatggagtttcactatattgcccagactggtcttgagctcctggtctcaagcaatcctcccacctcagcctcccaaagcactgggactata--ggcatgagcTCTCACAAATGGccca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30541468 127 - 170955103 tcttttgtaaagatggagtttcactatattgcccagactggtcttgagctcctggtctcaagcaatcctcccacctcagcctcccaaagcactgggactata--ggcatgagctctcacaaatggccca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     837754 127 +   1495729 tcttttgtaaagatggggtttcactatattgcccagactggtcttgagctcctggtctcaagcaatcctcccacctcagcctcccaaagcactgggactata--ggcatgagcTCTCACAAATGGccca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      60886 127 -    811324 tcttttataaagttggggtttcactatattgcccagactggtcttgagctcctggtctcaagcaatcctcccacctcagcctcccaaagcactgggactata--ggcatgagcTCTCACAAATGGccca
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30091414 127 -  71996105 tcttttgtaaagatggggtttcactatattgcccagactggtcttgagctcctggtctcaagcaatcctcccacctcagcctcccaaagcactgggactata--ggcgtaagctctcacaaatggccca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      98197 127 +    779361 tcttttgtaaagttggggtttcactatattgcccagactggtcttgagctcctggtctcaagcaatcctcccacctcagcctcccaaagcactgggactata--ggcataagcTCTCACAAATGGccca
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     761615 127 -   1829203 tcttttgtaaagatggggtttcactatgttgcccagactggtcttgagctcctggtctcaagcaatcctcccacctcagcctcccaaagcactgggactata--ggcatgagcTCTCACAAATGGccca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30922228 127 + 171630274 tcttttgtaaagatgggatttcactatgttgcccagtctagtcttgagctcctggtctcaagctatcctcccacctcagcctcccaaagcactgggactaca--ggcatgagccCTCATCCATGGCCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            93518 127 -    750284 tcttttgtgaagatgggatttcactatgttgcccagtctagtcttgagctcctggtctcaagctatcctcccacctcagcctcccaaagcactgggactaca--ggcatgagccCTCATCCATGGCCCT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1341801 127 -   1771730 tcttttgtaaagatgggattttactatgttgcccagtctagtcttgagctcctggtctcaagctatcctcccatctcagcctcccaaagcactgggactaca--ggcatgagccCTCATCCATGGCCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      40830 127 -    566255 tcttttgtaaagatgggatttcactacgttgcccagtctagtcttgagctcctggtctcaagctatcctcccacctcagcctcccaaagcactgggactaca--ggcatgagccCTCATCCATGGCCCT
i aotNan1.NW_018511496v1   C 0 C 0
e micMur3.chr6               655399 831 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I
e proCoq1.NW_012149775v1     687036 488 -   1411461 I
e canFam3.chr12              379308   0 +  72498081 C
e otoGar3.GL873550           706966  56 +  18854210 I

a score=451165.000000
s hg38.chr6_GL000254v2_alt  1896213 39 +   4827813 catccattcttttactcaggtatcaatgtccttattt-tt
s panTro5.chr6             30741883 39 + 175400573 catccattcttttactcaggtatcaatgtccttattt-tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31165511 39 + 173848474 catccattcttttactcaggtatcaatgtccttattt-tt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     672508 39 +   2037526 catccattcttttactcaggtatcaatgtccttattt-tt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75341161 39 + 122973662 catccattattttaatcaggtatcaatgtccttattt-tg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31252588 39 + 172585720 catccattcttttaatcaggtatcaatggcctttttt-aa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30541595 39 - 170955103 catccattcttttaatcaggtatcaatggcctttttt-aa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     837881 39 +   1495729 catccattcttttaatcaggtatcaatggcctttttt-aa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      61013 39 -    811324 catccattcttttaatcaggtatcaatggcctttttt-aa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30091541 39 -  71996105 catccattcttttaatcaggtatcaatggcctttttt-aa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      98324 39 +    779361 catccattcttttaatcaggtatcaatggcctttttt-aa
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     761742 40 -   1829203 catccattcttttaatcaggtatcaatggccttttttaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30922355 39 + 171630274 GATCCATTCTTTTAATCaggtatcaatgtcttcattt-ta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            93645 39 -    750284 GATCCATTCTTTTAATCaggtatcaatgtcttcattt-aa
i saiBol1.JH378327         C 0 I 311
s cebCap1.NW_016107755v1    1341928 39 -   1771730 GATCCATTCTTTTAATCaggtatcaatgccttcattt-ta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      40957 39 -    566255 GATCTATTCTTTTAATCaggtatcaacgtcttcattt-ta
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     687524 39 -   1411461 catcccttcttttaatcaggtaacaatgccttcattt-tt
i proCoq1.NW_012149775v1   I 488 C 0
s otoGar3.GL873550           707022 39 +  18854210 catctgttcttttaatcaggtatcaataccttcattt-tt
i otoGar3.GL873550         I 56 C 0
s canFam3.chr12              379308 39 +  72498081 cgtcctttcttctaattaggtatcagcatcctcactc-ta
i canFam3.chr12            C 0 C 0
e micMur3.chr6               655399 831 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I

a score=628769.000000
s hg38.chr6_GL000254v2_alt  1896252 51 +   4827813 aaaa--tcaaagtaactaagactc--agagtagcaaaatcacttactcaagacct
s panTro5.chr6             30741922 51 + 175400573 aaaa--tcaaagtaactaagactc--agagtagcaaaatcacttactcaagacct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31165550 51 + 173848474 aaaa--tcaaagtaactaagactc--agagtagcaaaatcacttactcaagacct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     672547 51 +   2037526 aaaa--tcaaagtaactaagactc--agagtagcaaaatcacttactcaagacct
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75341200 51 + 122973662 aaaa--tcaaagtaactaagactc--agagtagcaaaatcacttacttaagacct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31252627 53 + 172585720 aaaaagtcaaagtaactaagactc--agagtagcaaaatcacttgctcaagacct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30541634 53 - 170955103 aaaaagtcaaagtaactaagactc--agagtagcaaaatcacttgctcaagacct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     837920 53 +   1495729 aaaaagtcaaagtaactaagactc--agagtagcaaaatcacttgctcaagacct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      61052 53 -    811324 aaaaagtcaaagtaactaagactc--agagtagcaaaatcacttgctcaagacct
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30091580 53 -  71996105 aaaaagtcaaagtaactaagactc--agagtagcaaaatcacttgctaaagacct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      98363 53 +    779361 aaaaagtcaaagtaactaagactc--agagtagcaaaatcacttgctcaagacct
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     761782 53 -   1829203 aaaaaatcaaagtaactaagactc--agagtagcaaaatcacttgctcaagacct
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30922394 51 + 171630274 aaaa--tcaaagtaaccaagactc--agagtagcaaaatcacttgctcaagactt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            93995 51 -    750284 aaaa--tcaaagtaactaagactc--agagtagcaaaagcacttgctcaagacct
i saiBol1.JH378327         I 311 C 0
s cebCap1.NW_016107755v1    1341967 52 -   1771730 aaaa--tcaaaataactaagactca-agagtagcaaaatcacttgctcaagacct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      40996 53 -    566255 aaaa--tcaaagtaactaagactcatagagtagcaaaatcacttgctcaagacct
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     687563 47 -   1411461 aaaa--tcaaagt----aagactc--aacgcagctaaatcacttgctcaagacca
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           707061 47 +  18854210 aaaa--ccaaagt----aagactc--aaagcagctaaatcacttactcaagacca
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              379347 35 +  72498081 aaaa--tcaaaataactaagactc--agggtgggtaaat----------------
i canFam3.chr12            C 0 C 0
e micMur3.chr6               655399 831 + 123392446 I
e mm10.chr17               58999825 3677 -  94987271 I

a score=2336303.000000
s hg38.chr6_GL000254v2_alt  1896303 197 +   4827813 cacagctgagaagaggtggaatttaactc-aggctgtc-atgatccttccactgcagcagacgcctcttctgCCTTGCCCACCGCCACTGGC-AGAGATCACCCCTCAGACACCCTGGGGCCTAATGAGACCTGATCGCCCTCTCTCTTCTCCGAATA-TGAAAACTCTGTA--CCTCCTTGGAGGCCACC---ACGCACAAGCTG
s panTro5.chr6             30741973 197 + 175400573 cacagctgagaagaggtggaatttaactc-aggctgtc-atgatccttccactgcagcagatgcctcttctgCCTTGCCCACCGCCACTGGC-AGAGATCACCCCTCAGACACCCTGGGGCCTAATGAGACCTGATCACCCTCTCTCTTCTCCGAATA-TGAAAACTCTGTA--CCTCCTTGGAGGCCACC---ACGCACAAGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31165601 197 + 173848474 cacagctaagaagaggtggaatttaactc-aggctgtc-atgatccttccactgcagcagatgcctcttctgCCTTGCCCACCGCCACTGGC-AGAGATCACCCCTCAGACACCCTGGGGCCTAATGAGACCTGATCACCCTCTCTCTTCTCCGAATA-TGAAAACTCTGTA--CCTCCTTGGAGGCCACC---ACGCACAAGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     672598 197 +   2037526 cacagctgagaagaggtggaatttaactc-aggctgtc-atgatccttccactgcagcagatgcctcttctgCCTTGCCCACCGCCACTGGC-AGAGATCACCCCTCAGATACCCTGGGGCCTAATGAGACCTGATCGCCCTCTCTCTTCTCCGAATA-TGAAAACTCTGTA--CCTCCTTGGAGGCCACC---ACGCACAAGCTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75341251 197 + 122973662 cacagctgagaagtggtggaatttaactc-aggctgtc-atgatccttccactgcagcagatgcctcttctgCCTTGCTCACCGCCACTGGC-AGAGATCACCCCTCAGACACCCTGGGGCCTAATGAGACCTGATCGCCCTCTCTCTTCTCCAAATA-TGAAAACTCTGTA--CCTCCTTGGAGGCCACC---AAGCACAAGCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31252680 198 + 172585720 cacagctgagaagaggctgaatttaaccc-aggctgtcaatgatccctccactgcagcagatgcttcttctgCCTTGCCCACCACCACTGGC-AGAGATCACCCCTCAGACACCCTGGGGCCTAATGAAACGTGATCACCCTCTCTCTTTTCCAAATA-TGAAAACCCTGTA--CCTCCTTGGAGGCCACC---ACGCACAAGCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30541687 198 - 170955103 cacagctgagaagaggctgaatttaaccc-aggctgtcaatgatccctccactgcagcagatgcttcttctgccttgcccaccacCACTGGC-AGAGATCACCCCTCAGACACCCTGGGGCCTAATGAAACGTGATCACCCTCTCTCTTTTCCAAATA-TGAAAACCCTGTA--CCTCCTTGGAGGCCACC---ACGCACAAGCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     837973 198 +   1495729 cacagctgagaagaggctgaatttaaccc-aggctgtcaatgatccctccactgcagcagatgcttcttctgCCTTGCCCACCACCACTGGC-AGAGATCACCCCTCAGACACCCTGGGGCCTAATGAAACGTGATCACCCTCTCTCTTTTCCAAATA-TGAAAACTCTGTA--CCTCCTTGGAGGCCACC---ACGCACAAGCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      61105 198 -    811324 cacagctgaaaagaggctgaatttaaccc-aggctgtcaatgatccctccactgcagcagatgcttcttctgCCTTGCCCACCACCACTGGC-AGAGATCACCCCTCAGACACCCTGGGGCCTAATGAAACATGATCACCCTCTCTCTTTTCCAAATA-TGAAAACTCTGTA--CCTCCTTGGAGGCCACC---ACGCACAAGCTG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30091633 197 -  71996105 cacagctgagaagaggttgaatttaaccc-aggctgtcaatgat-ccttcactgcagcagatgcttcttctgccttgcccaccacCACTGGC-AGAGATCACCCCTCAGACACCCTGGGGCCTAATGAAACGTGATCACCCTCTCTCTTTTCCAAATA-TGAAAACTCTGTA--CCTCCTTGGAGGCCACC---ACACACAAGCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      98416 198 +    779361 cacagctgagaagaggctgaatttaaccc-aggctgtcaatgatccctccactgcagcagatgcttcttctgCCTTGCCCACCACCACTGGC-AGAGATCACCCCTCAGACACCCTGGGGCCTAATGAAACATGATCACCCTCTCTCTTTTCCAAATA-TGAAAACTCTGTA--CCTCCTTGGAGGCCACC---ACGCACAAGCTG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     761835 198 -   1829203 cacagctgagaagaggttgaatttaaccc-aggctgtcaatgatccttccactgcagcagatgcttcttctgCCTTGCCCACAGCCACTGGC-AGAGATCACCCCTCAGACACCCTGGGGCCTAATGAAACGTGATCACCCTCTCTCTTTTCCAAATA-TGAAAACTCTGTA--CCTCCTCGGAGGCCACC---ACGCACAAGCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30922445 197 + 171630274 cacagctgagaagaggcggaatttaactc-aggctgtc-atgatctttccaccacagcagatgcctcttctgCCTTGCCCGTGACCACTGGC-AGAGATCACCCCTCAGACACCCTGGGGCCTAATAAGCCCAGATCACCCACCCTCTTTTCCAAATA-TGAAAACTCTGTT--CCTCCTTGGAGGCCACC---AAGCATGAGCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            94046 197 -    750284 cacagctgagaagaggtggaatttaactc-aggctgtc-atgatctttccactacagtagatgcctcttctgCCTTGCCCACAACCACTGGC-AGAGATCACCCCTCAGACACCCTGGGACCTAATAAGACCTGACCAACCTCCCTCTTTTCCAAATA-CGAAAATTCTGTT--CCTCCTTGGAGGCCACC---ATGCATGAGCTG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1342019 197 -   1771730 cacagctgagaagaggtggaatttaactc-aggctgtc-atgatctttccactacagcagatgcctcttctgCCTTGCCCGTGACCACTGGC-AGAGATCACCCCTCAGACACCATGGGGCCTAATGAGACCTGATCACCCTCCCTCTTTTCCAAATA-TGAAAACTCTGTT--CCTCCTTGGAGGCCACC---ATGCATGAGCTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      41049 197 -    566255 cacagctgagaagaggtggaatttaactc-aggctgtc-atgatctttccactacagcagatgcctcttctgCCTTGCCCGTGACCACTGGC-AGAGATCACCCCTCAGACACCCTGGGGCCTAATGAGACCTGATCACCCTCCCTCTTTTCCAAATA-TGAAAACTCTGTT--CCTCCTTGGAGGCCACC---ATGCATGAGCTG
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     687610 187 -   1411461 cacagctgaggagaggtgggatttggctc-aggctgtc-gtgatccttctgccacagcagatgcctcctctgCCTCGCCC-CGACCACGAGC-AGAGGTCACCCCTCAGAGACCCTGCAGCCTAATAAGACCTGCTTTCCCTCCCTCTT----------TGCCAACTGTATA--CCTCCTGGGAGGCCACC---ATGCGCAGGACA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           707108 187 +  18854210 cacagctga-gagaggaggaatttggctc-aagctgt--gtgatccttccactacagc--atgcctcatctgCTTTGCCCATGACTACCAGCAAGAGGTTACCCCTCAGAGACCTTGTGGCCTAAAAAGACCTACTTTCCCTCCCTCTT-------------CCGCTGTATATGCCTCCTAGGAGGCCACCTTGATGTACAGGACA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59003502 168 -  94987271 CAGAGCCAACAAGAGACAGAACTT----------------------CTGCACCGCAGTAGGCACC-CTTCTCTGTTCCCCAGGGCCAACGAC-AAAGGCTGTTCTTTGAAGGACGTAAATCCAGACA------GGCCTACCTCCCTCCTCTACAAATACTGAAAACACAGAG--CCTA--AGAAGGCCACT---ACG-GCAGGCTG
i mm10.chr17               I 3677 C 0
s canFam3.chr12              379382 115 +  72498081 ---aactAGGAAAAGGTGGAAATTAAGTCAAGGGTGCC-AGGAACCTTCCACT---------------------------------ATTGCC-A-------------------------------------------ACACTCTC-CTTTTCCAAATA-GTGAAACTATGTA--CCTC---AGAGACTGCC---ATGCATGGGCCA
i canFam3.chr12            C 0 C 0
e micMur3.chr6               655399 831 + 123392446 I

a score=20070683.000000
s hg38.chr6_GL000254v2_alt  1896500 1279 +   4827813 CCACTTCCTTACCCACACAGCCGATGGTCACCACCCCATCCTTGTAGCGCTCTTGGGTTGGGCCAGTTGGCTCCATTGCTGAATCAGTCTGCTGCTCCACCAGGACTGCTGGGCCAtcctcctcttcctcctcctccCCAGAGCCATTACCCCAGGTGGCCCCAGCCACATCCCGAGCAATCTTCTCCCGCCAGCTGCTCAAGTCCACTGCTCAAAGAAGGAGAAGATTA--AAGAGGTTCTCCCCA-----GGGCTGCTGTGCATGATGGCACATA----CTGTGC-------CCTGCACAGattatgtaa-ctggcaccctctggagttgtacagtgccaacctaaataaGAGCAGGTCAGAGAA-TCTCCCAAAAGTCATTTGACCCTACCCTCCCTGGAATCACGCAC---GTTTC----TCTGAGCTTCTGAAAAGTACTGGGAAGGCTAAAGGCAGCAAGCCACTGAGGCTCCTGACTACCTGCTGCCTCTC--GTCCCACCAAGTCAGTCTGCTCCTT-ATTCTGTCCCTTCCCCTGGCCTCTTGCACATATCCACCATAGAGGGG-TTGGCTTCAGGAAAGGTGAGCAAAATGATTCTGCATCT--------TTGG--------TCTCCCCCATGTCCTCCTACAGCCCT-CCTCTAAGGGCCACATACCTTTCCCCACAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGGGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAAGACTGAGATCAGAGGGCACAAAAGGATGGGCACACGGGCTTAGGCCTCTCATCTCTCCCACCACCCTTAGGCCCAAGACCAGGTGC-CCCCTTGTCAATAAGCCTCTCTGTTCTCC--CCTTTG----TCCCCTGCCAACTCACCTCTCCCAAGTTGCCCTC---------------------------TCTCA-----------------------------------TTGCCCACTCACCACTACTAGGGTCCTGTGGGGTGCGGGGGTCCCGAGGAAAAGAGGTGAAAAGGACGACGTGGAGCTGGGGATAGTGTTGATGGAAATAATGCTTCCAGGCAACCACAAGAGCTGGCGGGGCCAGATCCACCTTGTTC-AAAACCAGCACCAGGGCCAGTCCAAGTTCTCCAGTCACATACTCATAAAGTGCTGGCGGGAAATTCACAACCTAGGACAGAGTTGATAAGAGGATGGAGCAGTGAAA-GTCAACCCAGAGTTCTCTGCCTCCAGC-TCCCCACTCAGCAGGTGTAGCTCAGAGACAAGGCCCTGGTGGTAGCAGACTCTGGGctaaaaacta-taaaccagacaaactgaaaaacaaagacaaaaCAGGGGTTAGTAATA
s panTro5.chr6             30742170 1279 + 175400573 CCACTTCCTTACCCACACAGCCGATGGTCACCACCCCATCCTTGTAGCGCTCTCGGGTTGGGCCAGTTGGCTCCATTGCTGAATCAGTCTGCTGCTCCACCAGGACTGCTGGGCCAtcctcctcttcctcctcctccCCAGAGCCATTACCCCAGGTGGCCCCAGCCACATCCCGAGCAATCTTCTCCCGCCAGCTGCTCAAGTCCACTGCTCAAAGAAGGAGAAGATTA--AAGAGGTTCTCCCCA-----GGGCTGCTGTGCATGATGGCACATA----CTGTGC-------CCTGCACAGattatgtaa-ctggcaccctctggagttgtacagtgccaacctaaacaaGAGCAGGTCAGAGAA-TCTCCCAAAAGTCATTTGACCCTACCCTCCCTGGAATCACGCAC---GTTTC----TCTGAGCTTCTGAAAAGTACTGGGAAGGCTAAAGGCAGCAAGCCACTGAGGCTCCTGACTACCTGCTGCCTCTC--ATCCCACCAAGTCAGTCTGCTCCTT-ATTCTGTCCCTTCCCCTGGCCTCTTGCACATATCCACCATAGAGGGG-TTGGCTTCAGGAAAGGTGAGCAAAATGATTCTGCATCT--------TTGG--------TCTCCCCCATGTCCTCCTACAGCCCT-CCTCTAAGGGCCACATACCTTTCCCCACAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGGGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAAGACTGAGATCAGAGGGCACAAAAGGATTGGCACACGGGCTTAGGCCTCTCATCTCTCCCACCACCCTTAGGCCCAAGACCAGGTGC-CCCCTTGTCAATAAGCCTCTCTGTTCTCC--CCTTTG----TCCCCTGCCAACTCACCTCTCCCAGGTTGCCCTC---------------------------TCTCA-----------------------------------TTGCCCACTCACCACTACTAGGGTCCTGTGGGGTGCGGGGGTCCCGAGGAAAAGAGGTGAAAAGGACGACGTGGAGCTGGGGATAGTGTTGATGGAAATAATGCTTCCAGGCAACCACAAGAGCAGGCGGGGCCAGATCCACCTTGTTC-AAAACCAGCACCAGGGCCAGCCCAAGTTCTCCAGTCACATACTCATAAAGTGCTGGCGGGAAATTCACAACCTAGGACAGAGTTGATAAGAAGATGGAGCAGTGAAA-GTCAACCCAGAGTACTCTGCCTCCAGC-TCCCCACTCAGCAGGTGTAGCTCAGAGACAAGGCCCTGGTGGTAGCAGACTCTGGGctaaaaacta-taaaccagacaaactgaaaaacaaagacaaaaCAGGGGTTAGTAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31165798 1279 + 173848474 CCACTTCCTTACCCACACAGCCGATGGTCACCACCCCATCCTTGTAGCGCTCTCGGGTTGGGCCAGTTGGCTCCATTGCTGAATCAGTCTGCTGCTCCACCAGGACTGCTGGGCCAtcctcctcttcctcctcctccCCAGAGCCATTACCCCAGGTGGCCCCAGCCACATCCCGAGCAATCTTCTCCCGCCAGCTGCTCAAGTCCACTGCTCAAAGAAGGAGAAGATTA--AAGAAGTTCTCCCCA-----GGGCTGCTGTGCATGATGGCACATA----CTGTGC-------CCTGCACAGattatgtaa-ctggcaccctctggagttgtacagtgccaacctaaacaaGAGCAGGTCAGAGAA-TCTCCCAAAAGTCATTTGACCCTACCCTCCCTGGAATCACGCAC---GTTTC----TCTGAGCTTCTGAAAAGTACTGGGAAGGCTAAAGGCAGCAAGCCACTGAGGCTCCTGACTACCTGCTGCCTCTC--ATCCCACCAAGTCAGTCTGCTCCTT-ATTCTGTCCCTTCCCCTGGCCTCTTGCACATATCCACCATAGAGGGG-TTGGCTTCAGGAAAGGTGAGCAAAATGATTCTGCATCT--------TTGG--------TCTCCCCCATGTCCTCCTACAGCCCT-CCTCTAAGGGCCACATACCTTTCCCCACAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGGGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAAGACTGAGATCAGAGGGCACAAAAGGATTGGCACACGGGCTTAGGCCTCTCATCTCTCCCACCACCCTTAGGCCCAAGACCAGGTGC-CCCCTTGTCAATAAGCCTCTCTGTTCTCC--CCTTTG----TCCCCTGCCAACTCACCTCTCCCAGGTTGCCCTC---------------------------TCTCA-----------------------------------TTGCCCACTCACCACTACTAGGGTCCTGTGGGGTGCGGGGGTCCCGAGGAAAAGAGGTGAAAAGGACGACGTGGAGCTGGGGATAGTGTTGATGGAAATAATGCTTCCAGGCAACCACAAGAGCAGGCGGGGCCAGATCCACCTTGTTC-AAAACCAGCACCAGGGCCAGCCCAAGTTCTCCAGTCACATACTCATAAAGCGCTGGCGGGAAATTCACAACCTAGGACAGAGTTGATAAGAAGATGGAGCAGTGAAA-GTCAACCCAGAGTACTCTGCCTCCAGC-TCCCCACTCAGCAGGTGTAGCTCAGAGACAAGGCCCTGGTGGTAGCAGACTCTGGGctaaaaacta-taaaccagacaaactgaaaaacaaagacaaaaCAGGGGTTAGTAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     672795 1278 +   2037526 CCACTTCCTTACCCACACAGCCGATGGTCACCACCCCATCCTTGTAGCGCTCTCGGGTTGGGCCAGTTGGTTCCATTGCTGAATCAGTCTGCTGCTCCACCAGGACTGCTGGGCCAtcctcctcttcctcctcctccCCAGAGCCATTACCCCAGGTGGCCCCAGCCACATCCCGAGCAATCTTCTCCCGCCAGCTGCTCAAGTCCACTGCTCAAAGAA-GAGAAGATTA--AAGAGGTTCTCCCCA-----GGGCTGCTGTGCATGATGGCACATA----CTGTGC-------CCTGCACAGattatgtaa-ctggcaccctctggagttgtacagtgccaacctaaacaaGAGCAGGTCAGAGAA-TCTCCCAAAAGTCATTTGACCCCACCCTCCCTGGAATCACGCAC---GTTTC----TCTGAGCTTCTAAAAAGTACTGGGAAGGCTAAAGGCAGCAAGCCACTGAGGCTCCTGACTACCTGCTGCCTCTC--GTCCCACCAAGTCAGTCTGCTCCTT-ATTCTGTCCCTTCCCCTGGCCTCTTGCACATATCCACCATAGA-GGG-TTGGCTTCAGGAAAGGTGAGCAAAATGATTCTGCATCT--------TTGG--------TCTCCCCCATGTCCTCCTACAGCCCT-CCTCTAAGGGCCACATACCTTTCCCCACAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGAGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAAGACTGAGATCAGAGGGCACAAAAGGATTGGCACACGGGCTTAGGCCTCTCATCTCTCCCACCACCCTTAGGCCCAAGACCAGGTGC-CCCCTTGTCAATAAGCCTCTCTGTTCTCC--CCTTTG----TCCCCTGCCAACTGACCTCTCCCAAGTTGCCCTC---------------------------TCTCA-----------------------------------TTGCCCACTCACCACTACTAGGGTCCTGTGGGGTGCGGGGGTCCCGAGGAAAAGAGGTGAAAAGGACGACGTGGAGCTGGGGATAGTGTTGATGGAAATAATGCTTCCAGGCAACCACAAGAGCTGGCGGGGCCAGATCCACCTTGTTCAAAAACCAGCACCAGGGCCAGCCCAAGTTCTCCAGTCACATACTCATAAAGTGCTGGTGGGAAATTCACAACCTAGGACAGAGTTGATAAGAGGATGGAGCAGTGAAA-GTCAACCCAGAGTTCTCTGCCTCCAGC-TCCCTACTCAGCAGGTGTAGCTCAGAGACAAGGCCCTGGTGGTAGCAGACTCTGGGctaaaaacta-taaaccagacaaactgaaaaacaaagacaaaaCAGGGGTTAGTAATA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75341448 1232 + 122973662 CCACTTCCTTACCCACACAGCCGATGGTCACCACCCCATCCTTGTAGCGCTCTCGGGTTGGGCCAGTTGGCTCCATTGCTGAATCAGTCTGCTGCTCCACCAGGACTGCTGGGCCAtcctcctcttcctcctcctccCCGGACCCATTACCCCAGGTGGCCCCAGCCACATCCCGAGCAATCTTCTCCCGCCAGCTGCTCAAGTCCACTGCTCAAAGAAGGAGAAGATTA--AAAAGGTTCTCCCCA-----GGGCTGCTGTGCATGATGGCACTTA----CTGTGC-------CCTGCACAGattatgtaa-ctggcaccctctggagttgtacagtgccaacctgaacaaGAGCAGGTTAGAGAA-TCTCCCAAAAGTCACTTGACCCCACCCTCCCTGGAATCATGCAT---GTTTC----TCTGAGCTTCTGAAAAGTACTGGGAAGGCTAAAGGCAGCAAGCCACTGAGGCTCCCGACTACCTGCTGCC---------------------------------------------------CCTCTTGCACATATCCACCATAGAGGGA-TTGGCTTCAGGAAAGGTGAGCAAAATGATTCTCCATCT--------TTGG--------TCTCCCCCATGTCCTCCTACAGCCCT-CCTCTAAGGGCCACATACCTTTTCCCACAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGGGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAAGACTGAGATCAGAGGGCACAAAAGGATTGGCACACTGGCTTAGGCCTCTCATCTCTCCCACCACCCTTAGGCCCAAGACCAGGTGC-CCCCTTGTCAATAAGCCTCTCTGTTCCCC--CCTTTG----TCCCCTGCCAACTCACCTCTCCCAAGTTGCCCTC---------------------------TCTTA-----------------------------------TTGCCCACTCACCACTACTAGGGTCCTGTGGGGTGCGGGGGTCCCGAGGAAAAGAGGTGAAAAGGACGACGTGGAGCTGGGGATAGTGTTGATGGAAATAATGCTTCCAGGCAACCACAAGAGCTGGCGGGGCCAGATCCACCTTGTTC-AAAACCAGCACCAGGGCCAACCCAAGTTCTCCAGTCACATACTCATAAAGTGCTGGCGGGAAATTCACAACCTAGGACAGGGTTGATAAGAGGATGGAGCAGTGAAAGGTCAACCCAGAGTTCTCTGCCTCCAGC-TCCCCACTCAGCAGGCGTGGCTCAGAGACAAGGCCCTGGTGGTAGCAGACTCTGGGCTAAAAACTA-TAAACCAGACAAACTGAAAAACGAAGATGAAACAGGGGTTAGTAATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31252878 1286 + 172585720 CCACTTCCTTACCCACACAGCCGATGGTCACCACCCCATCCTTGTAGCGCTCTCGGGTTGGGCCGGTTGGCTCCATTGCTGAATCAGTCTGCTGCTCCACCAAGACTGCTGGGCCATCGTCCTCTTCCTCCTCCTCCCCGGAGCCATTACCCCAGGTGGCCCCCGCTACATCCCGAGCAATCTTCTCCCGCCAGCTGCTCAAGTCCACTGCTCAAAGAAGGAGAAGATTA--AAGAGGTCCTCCCca-----gggctgctgtgtatgatggcacata----ctgtgccttgcagcctgcacagattatgtaa-ctggcaccctctggaggtgtacagtgccaacctgaacaaGAGCAGGTCAGAGAA-TCTCCCAAAAGTCACTTGATCCCACCCTCCCTGGAATCATGCAC---ATCTC----TCCGAGCTTCTGAAAAGTACTAGGAAGGCTAAAGGCAGCAAGCCACTGAGGCTCCCGACTACTTGCTACCTCTC--GTCCCACCAGGTCAGTCTGCTCCTT-ACTCTATCCCTTCCCC-GGCTTCTTGCATATCTCCACCATACAGCGG-GTGGCTTCAGGAAAGGTGAGCAAAATGATTCTGCGTCT--------TGGG--------TCTTCCCCATGTCCTCCTACAGCCCT-CCTCTAAGGGCCACATACCTTTCCCCACAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGGGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAAGACTGAGATCAGAAGGCACGAAAGGATTGGCACACGGGCTTAGGCCTCTCATCTCTCCCACCACCCTTAGGCCCAAGACCAGGTGC-CCCCTTGTCAACAAGCCTCTCTGTTCTCC--CCTTTG----TCCCCTGCCAACTCACCTCTCCCAAGCTGCCCTC---------------------------TCTCA-----------------------------------TTGCCCACTCACCACTACTAGGGTCCTGTGGGGTGCGGGGGTCCCGAGGGAAAGAGGTGAAAAGGACGACATGGAGCTGGGGATAGTGTTGATGGAAATAATGCTTCCAGGCAACCACAAGAGCTGGCGGGGCCAGATCCACCTTGTTC-AAAACCAGCACCAGGGCCAGCCCAAGTTCTCCAGTCACATACTCATAAAGTGCTGGCGGGAAATTCACAACCTAGGACAGGGTTGATAAGAAGATGGAGCAGTGAAAGGTCAACCCAGAGTTCTCTGCCTCCAGC-TCTCCACTTAGCAGGCATAGCTCAGAGACAAGGCCCTGGTGGTAGCAGATTCTGGGCTAAAAACTA-TAAACCAGCCAAACTGAAAAAGGAAGACAAAACAGGGGTTAGTAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30541885 1286 - 170955103 CCACTTCCTTACCCACACAGCCGATGGTCACCACCCCATCCTTGTAGCGCTCTCGGGTTGGGCCGGTTGGCTCCATTGCTGAATCAGTCTGCTGCTCCACCAAGACTGCTGGGCCATCATCCTCTTCCTCCTCCTCCCCGGAGCCATTACCCCAGGTGGCCCCCGCTACATCCCGAGCAATCTTCTCCCGCCAGCTGCTCAAGTCCACTGCTCAAAGAAGGAGAAGATTA--AAGAGGTCCTCCCca-----gggctgctgtgtatgatggcacata----ctgtgccttgcagcctgcacagattatgtaa-ctggcaccctctggaggtgtacagtgccaacctgaacaaGAGCAGGTCAGAGAA-TCTCCCAAAAGTCACTTGATCCCACCCTCCCTGGAATCATGCAC---ATCTC----TCTGAGCTTCTGAAAAGTACTAGGAAGGCTAAAGGCAGCAAGCCACTGAGGCTCCCGACTACTTGCTACCTCTC--GTCCCACCAGGTCAGTCTGCTCCTT-ACTCTATCCCTTCCCC-GGCTTCTTGCATATCTCCACCATACAGCGG-GTGGCTTCAGGAAAGGTGAGCAAAATGATTCTGCGTCT--------TGGG--------TCTTCCCCATGTCCTCCTACAGCCCT-CCTCTAAGGGCCACATACCTTTCCCCACAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGGGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAAGACTGAGATCAGAAGGCACGAAAGGATTGGCACACGGGCTTAGGCCTCTCATCTCTCCCACCACCCTTAGGCCCAAGACCAGGTGC-CCCCTTGTCAACAAGCCTCTCTGTTCTCC--CCTTTG----TCCCCTGCCAACTCACCTCTCCCAAGCTGCCCTC---------------------------TCTCA-----------------------------------TTGCCCACTCACCACTACTAGGGTCCTGTGGGGTGCGGGGGTCCCGAGGGAAAGAGGTGAAAAGGACGACATGGAGCTGGGGATAGTGTTGATGGAAATAATGCTTCCAGGCAACCACAAGAGCTGGTGGGGCCAGATCCACCTTGTTC-AAAACCAGCACCAGGGCCAGCCCAAGTTCTCCAGTCACATACTCATAAAGTGCTGGCGGGAAATTCACAACCTAGGACAGGGTTGATAAGAAGATGGAGCAGTGAAAGGTCAACCCAGAGTTCTCTGCCTCCAGC-TCCCCACTTAGCAGGCATAGCTCAGAGACAAGGCCCTGGTGGTAGCAGATTCTGGGCTAAAAACTA-TAAACCAGCCAAACTGAAAAAGGAAGACAAAACAGGGGTTAGTAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     838171 1286 +   1495729 CCACTTCCTTACCCACACAGCCGATGGTCACCACCCCATCCTTGTAGCGCTCTCGGGTTGGGCCGGTTGGCTCCATTGCTGAATCAGTTTGCTGCTCCACCAAGACTGCTGGGCCATCGTCCTCTTCCTCCTCCTCCCCGGAGCCATTACCCCAGGTGGCCCCCGCTACATCCCGAGCAATCTTCTCCCGCCAGCTGCTCAAGTCCACTGCTCAAAGAAGGAGAAGATTA--AAGAGGTCCTCCCca-----gggctgctgtgtatgatggcacata----ctgtgccttgcagcctgcacagattatgtaa-ctggcaccctctggaggtgtacagtgccaacctgaacaaGAGCAGGTCAGAGAA-TCTCCCAAAAGTCACTTGATCCCACCCTCCCTGGAATCACGCAC---ATCTC----TCTGAGCTTCTGAAAAGTACTAGGAAGGCTAAAGGCAGCAAGCCACTGAGGCTCCCGACTACTTGCTGCCTCTC--GTCCCACCAGGTCAGTCTGCTCCTT-ATTCTATCCCTTCCCC-GGCTTCTTGCACATCTCCACCATACAGCGG-GTGGCTTCAGGAAAGGTGAGCAAAATGACTCTGCATCT--------TGGG--------TCTTCCCCATGTCCTCCTACAGCCCT-CCTCTAACGGCCACATACCTTTCCCCACAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGGGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAAGACTGAGATCAGAAGGCACGAAAGGATTGGCACACGGGCTTAGGCCTCTCATCTCTCCCACCACCCTTAGGCCCAAGACCAGGTGC-CCCCTTGTCAACAAGCCTCTCTGTTCTCC--CCTTTG----TCCCCTGCCAACTCACCTCTCCCAAGCTGCCCTC---------------------------TCTCA-----------------------------------TTGCCCACTCACCACTACTAGGGTCCTGTGGGGTGCGGGGGTCCCGAGGGAAAGAGGTGAAAAGGACGACATGGAGCTGGGGATAGTGTTGATGGAAATAATGCTTCCAGGCAACCACAAGAGCTGGCGGGGCCAGATCCACCTTGTTC-AAAACCAGCACCAGGGCCAGCCCAAGTTCTCCAGTCACATACTCATAAAGTGCTGGCGGGAAATTCACAACCTAGGACAGGGTTGATAAGAAGATGGAGCAGTGAAAGGTCAACCCAGAGTTCTCTGCCTCCAGC-TCTCCACTTAGCAGGCATAGCTCAGAGACAAGGCCCTGGTGGTAGCAGATTCTGGGCTAAAAACTA-TAAACCAGCCAAACTGAAAAAGGAAGACAAAACAGGGGTTAGTAATA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      61303 1286 -    811324 CCACTTCCTTACCCACACAGCCGATGGTCACCACCCCATCCTTGTAGCGCTCTCGGGTTGGGCCGGTTGGCTCCATTGCTGAATCAGTCTGCTGCTCCACCAAGACTGCTGGGCCATCGTCCTCTTCCTCCTCCTCCCCGGAGCCATTACCCCAGGTGGCCCCCGCTACATCCCGAGCAATCTTCTCCCGCCAGCTGCTCAAGTCCACTGCTCAAAGAAGGAGAAGATTA--AAGAGGTCCTCCCca-----gggctgctgtgtatgatggcacata----ctgtgccttgcagcctgcacagattatgtaa-ctggcaccctctggaggtgtacagtgccaacctgaacaaGAGCAGGTCAGAGAA-TCTCCCAAAAGTCACTTGATCCCACCCTCCCTGGAATCATGCAC---ATCTC----TCTGAGCTTCTGAAAAGTACTAGGAAGGCTAAAGGCAGCAAGCCACTGAGGCTCCCGACTACTTGCTGCCTCTC--GTCCCACCAGGTCAGTCTGCTCCTT-ATTCTGTCCCTTCCCC-GGCTTCTTGCACATCTCCACCATACAGCGG-GTGGCTTCAGGAAAGGTGAGCAAAATGATTCTGCGTCT--------TGGG--------TCTTCCCCATGTCCTCCTACAGCCCC-CCTCTAAGGGCCACATACCTTTCCCCACAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGGGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAAGACTGAGATCAGAAGGCACAAAAGGATTGGCACACAGGCTTAGGCCTCTCATATCTCCCACCACCCTTAGGCCCAAGACCAGGTGC-CCCCTTGTCAACAAGCCTCTCTGTTCTCC--CCTTTG----TCCCCTGCCAACTCACCTCTCCCAAGCTGCCCTC---------------------------TCTCA-----------------------------------TTGCCCACTCACCACTACTAGGGTCCTGTGGGGTGCGGGGGTCCCGAGGGAAAGAGGTGAAAAGGACGACATGGAGCTGGGGATAGTGTTGATGGAAATAATGCTTCCAGGCAACCACAAGAGCTGGCGGGGCCAGATCCACCTTGTTC-AAAACCAGCACCAGGGCCAGCCCAAGTTCTCCAGTCACATACTCATAAAGTGCTGGCGGGAAATTCACAACCTAGGACAGGGTTGATAAGAAGATGGAGCAGTGAAAGGTCAACCCAGAGTTCTCTGCCTCCAGC-TCCCCACTTAGCAGGCATAGCTCAGAGACAAGGCCCTGGTGGTAGCAGATTCTGGGCTAAAAACTA-TAAACCAGCCAAACTGAAAAAGGAAGACAAAACAGGGGTTAGTAATA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30091830 1286 -  71996105 CCACTTCCTTACCCACACAGCCGATGGTCACCACCCCATCCTTGTAGCGCTCTCGGGTTGGGCCGGTTGGCTCCATTGCTGAATCAGTCTGCTGCTCCACCAAGACTGCTGGGCCATCGTCCTCTTCCTCCTCCTCCCCGGAGCCATTACCCCAGGTGGCCCCCGCTACATCCCGAGCAATCTTCTCCCGCCAGCTGCTCAAGTCCACTGCTCAAAGAAGGAGAAGATTA--AAGAGGTCCTCCCca-----gggctgctgtgtatgatggcacata----ctgtgccttgcagcctgcacagattatgtaa-ctggcaccctctggaggtgtacagtgccaacctgaacaaGAGCAGGTCAGAGAA-TCTCCCAAAAGTCACTTGATCCCACCCTCCCTGGAATCATGCAC---ATCTC----TCTGAGCTTGTGAAAAGTACTAGGAAGGCTAAAGGCAGCAAGCCACTGAGGCTCCCGACTACTTGCTGCCTCTC--GTCCCACCAGGTCAGTCTGCTCCTT-ATTCTGTCCCTTCCCC-GGCTTCTTGCACATCTCCACCATACAGCGG-GTGGCTTCAGGAAAGGTGAGCAAAATGATTCTGCATCT--------TGGG--------TCTTCCCCATGTCCTCCTACAGCCCT-CCTCTAAGGGCCACATACCTTTCCCCACAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGGGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAAGACTGAGATCAGAAGGCACGAAAGGATTGGCACACAGGCTTAGGCCTCTCATCTCTCCCACCACCCTTAGGCCCAAGACCAGGTGC-CCCCTTGTCAACAAGCCTCTCTGTTCTCC--CCTTTG----TCCCCCGCCAACTCACCTCTCCCAAGCTGCCCTC---------------------------TCTCA-----------------------------------TTGCCCACTCACCACTACTAGGGTCCTGTGGGGTGCGGGGGTCCCGAGGGAAAGAGGTGAAAAGGACGACATGGAGCTGGGGATAGTGTTGATGGAAATAATGCTTCCAGGCAACCACAAGAGCTGGCGGGGCCAGATCCACCTTGTTC-AAAACCAGCACCAGGGCCAGCCCAAGTTCTCCAGTCACATACTCATAAAGTGCTGGCGGGAAATTCACAACCTAGGACAGGGTTGATAAGAAGATGGAGCAGTGAAAGGTCAACCCAGAGTTCTCTGCCTCCAGC-TCCCCACTTAGCAGGCATAGCTCAGAGACAACGCCCTGGTGGTAGCAGATTCTGGGCTAAAAACTA-TAAATCAGCCAAACTGAAAAAGGAAGACAAAACAGGGGTTAGTAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      98614 1286 +    779361 CCACTTCCTTACCCACACAGCCGATGGTCACCACCCCATCCTTGTAGCGCTCTCGGGTTGGGCCGGTTGGCTCCATTGCTGAATCAGTCTGCTGCTCCACCAAGACTGCTGGGCCATCGTCCTCTTCCTCCTCCTCCCCGGAGCCATTACCCCAGGTGGCCCCCGCTACATCCCGAGCAATCTTCTCCCGCCAGCTGCTCAAGTCCACTGCTCAAAGAAGGAGAAGATTA--AAGAGGTCCTCCCca-----gggctgctgtgtatgatggcacata----ctgtgccttgcagcctgcacagattatgtaa-ctggcaccctctggaggtgtacagtgccaacctgaacaaGAGCAGGTCAGAGAA-TCTCCCAAAAGTCACTTGATCCCACCCTCCCTGGAATCATGCAC---ATCTC----TCTGAGCTTCTGAAAAGTACTAGGAAGGCTAAAGGCAGCAAGCCACTGAGGCTCCCGACTACTTGCTGCCTCTC--GTCCCACCAGGTCAGTCTGCTCCTT-ATTCTGTCCCTTCCCC-GGCTTCTTGCACATCTCCACCATACAGCGG-GTGGCTTCAGGAAAGGTGAGCAAAATGATTCTGCGTCT--------TGGG--------TCTTCCCCATGTCCTCCTACAGCCCC-CCTCTAAGGGCCACATACCTTTCCCCACAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGGGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAAGACTGAGATCAGAAGGCACAAAAGGATTGGCACATGGGCTTAGGCCTCTCATCTCTCCCACCACCCTTAGGCCTAAGACCAGGTGC-CCCCTTGTCAACAAGCCTCTCTGTTCTCC--CCTTTG----TCCCCTGCCAACTCACCTCTCCCAAGCTGCCCTC---------------------------TCTCA-----------------------------------TTGCCCACTCACCACTACTAGGGTCCTGTGGGGTGCGGGGGTCCCGAGGGAAAGAGGTGAAAAGGACGACATGGAGCTGGGGATAGTGTTGATGGAAATAATGCTTCCAGGCAACCACAAGAGCTGGCGGGGCCAGATCCACCTTGTTC-AAAACCAGCACCAGGGCCAGCCCAAGTTCTCCAGTCACATACTCATAAAGTGCTGGCGGGAAATTCACAACCTAGGACAGGGTTGATAAGAAGATGGAGCAGTGAAAGGTCAACCCAGAGTTCTCTGCCTCCAGC-TCCCCACTTAGCAGGCATAGCTCAGAGACAAGGCCCTGGTGGTAGCAGATTCTGGGCTAAAAACTA-TAAACCAGCCAAACTGAAAAAGGAAGACAAAACAGGGGTTAGTAATA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     762033 1288 -   1829203 CCACTTCCTTACCCACACAGCCGATGGTCACCACCCCATCCTTGTAGCGCTCTCGGGTTGGGCCAGTTGGCTCCATTGCTGAATCAGTCTGCTGCTCCACCAAGACTGCTGGGCCATCGTCCTCTTCCTCCTCCTCCCCGGAGCCATTACCCCAGGTGGCCCCCGCTACATCCCGAGCAATCTTCTCCCGCCAGCTGCTCAAGTCTACTGCTCAAAGAAGGAGAAGATTA--AAGAGGTCCTCCCca-----gggctgctgtgtatgatggcacata----ctgtgccttgcagcctgcacagattatgtaa-ctggcaccctctggagttgtacagtgccaacctgaacaaGAGCAGGTCAGAGAA-TCTCCCAAAAGTCACTTGACCCCACCCTCCCTGGAATCATGCAC---ATTTC----TCTGAGCTTCTGAAAAGTACTGGGAAGGCTAAAGGTAGCAAGCCACTGAGGCTCCTGACTACCTGCTGCCTCTT--GTCCCACTAGGTCAGTCTGCTCCTTAATTCTGTCCCTTCCCCTGGCCTCTTGCACATCTCCATCATACAGCGG-GTGGCTTCAGGAAAGGTGAGCAAAATGATTCTGTGTCT--------TGGG--------TCTCCCTCATTGCCTCCTACAGCCCT-CCTCTAAGGGCCACATACCTTTCCCCACAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGTGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAAGACTGAGATCAGAAGGCACGAAAGGATTGGCACACGGGCTTAGGCCTCTCATCTCTCCCACCACCCTTAGGCCCAAGACCAGGTGC-CCCCTTATCAACAAGCCTCTCTGTTCTCC--CCTTTG----TCCCCTGCCAACTCACCTCTCCCAAGCTGCCCTC---------------------------TCTCA-----------------------------------TTGCCCACTCACCACTACTAGGGTCCTGTGGGGTGCGGGGGTCCCGAGGGAAAGAGGTGAAAAGAACGACATGGAGCTGGGGATACTGTTGATGGAAATAATGCTTCCAGGCAACCACAAGAGCTGGCGGGGCCAAATCCACCTTGTTC-AAAACCAGCACCAGGGCCAGCCCAAGTTCTCCAGTCACATACTCATAAAGTGCTGGCGGGAAATTCACAACCTAGGACAGGGTTGATAAGAAGATGGAGCAGTGAAAAGTCAACCCAGAGTTCTCTGCCTCCAGC-TCTCCACTTAGCAGGCATAGCTCAGAGACAAGGCCCTGGTGGTAGCAGATTCTGGGCTAAAAACTA-TAAACCAGCCAAACTGAAAAAGGAAGACAAAACAGGGGTTAGTAATA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30922642 1273 + 171630274 CCACTTCCTTACCCACACAACCGATGGTCACCACCCCATCCTTGTAGCGCTCCCGGGTTGGGCCAGTTGGCTCCATCGCTGAATCAGTCTGCTGCTCCACCAGGACTGCTGGCCCATCCTCTTCGTCCTCCTCCTCCCCGGAGCCATTACCCCAGGTGGCCCCAGCCACATCCCGAGCAATCTTCTCCCGCCAGCTGCTCAAGTCCACTGCTCAAAGAAGGAGAAGATG---AGGAGGTTCTCCCCG-----GGGTTGCTGTGTATGATGGCACATA----CTGTGC-------CCTGCACAGatgatgtaagatggcaccctctggagttgtacggtgccaacctgaacaaAAGTAGGCCAGAAAACTCTCCCAGCAGTCACTTGACCCCACCCTCCCTGAAATCATGCAC---ATTTCTGTGTCTGAGTTTCTGAAAAGTACTGGGAAGGCTGAAGGCAGTAAGCCACTGAGGCTCCCAACTACCTGCTGCCTCTC--ATCCCACCAAGTCAATCTGCTCCTT-ATTCTTTCCCTTTCCCTGGCTTCTCACACACATCCACCAGAGAGGT-----------GGAAAGGTGAGCCAAATGATTCTGCATCT--------TGGG--------TCTCCCCCATGGTCCCCAACAGCCCT-CCTCTAAGGGCCACATACCTTTTCCGACAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGGGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAAGACTGAGATCAGAGCGTACAAAAGGACTGGCACATAGGCTTAGGTCTCTCATCTCTCCCAACACCCTTAGGCCTAAGACCAGGTGC-CCCCTTGTCAACAAGCCTCTCTGTTCTCC--CCTTTG----TCCCCTGCCAACTCGCCTCTCCCTAGCTGCCCTC----------------------------CTCA-----------------------------------TTGCCTACTCACCACTACTAGGGTCCTGTGGAGTGCGGGGGTCCCGAGGGAAAGAGGTGAAAAGGACGACATGGAGCTGGGGATAGTGTTGGTGGAAGTAGTGCTTCCAGGCAACCACAAGAGCTGGCGGGGCCAGATCCACCTTGTTC-AAAACCAGCACGAGAGACAGCCCAAGTTCTCCAGTCACGTACTCATAAAGTGCTGGCGGGAAATTCACAACCTAGGACAGGGTTGGTAAGAGAATGGAGCAGTAAGAGGTCAACCCAGAGTTCTCTGCCTCCAGC-TGCCCACTCAGCAGGCATAGCTCAGAGACAAGACCCTGGCAGTAGCAGGTTCTGGGCTGAAAACTA-TAAACTACCCAAACTGAACAAGGAAGACAAAACA-GGGTTAGTAATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            94243 1275 -    750284 CCACTTCCTTACCCACACAACCAATGGTCACCACCCCATCCTTGTAGCGTTCCCGGGTTGGGCCAGTTGGCTCCATCGCTGAATCAGTCTGCTGCTCCACCAGGACTGCTGGCCCATCCTCTTCTTCCTCCTCCTCCCCGGAGCCATTACCCCAGGTGGCCCCAGCCACATCCCGAGCAATCTTCTCCCGCCAGCTGCTCAAGTCCACTGCTCAAAGAAAGAGAAGATGA--AGGAGGCTCTTCCca-----gggctgctatgtatgatggcacata----ctgtgc-------cctgcacagatgatgtaagatggcaccctctggagttgtacggtgccaaccggaacaaAAGTAGGCCAGAGAACTCTCCCAGTGGTCACTTGACCCCACCCTCCCTGAAATCATGCAC---ATTTCTGTGTCTGAGTTTCTGAAAAGTACTGGGAAGGCTGAAGGCAGCAAGCCACTGAGGCTCCCTACTACCTGCTGCCTCTC--ATCCCACCAAGTCAATCTGCTCCTT-ATTCTTTCCCTTTCCCTGGCCTCTCGCACACATCCACCATAGAGGT-----------TGAAAGGTGAGCAAAATGATTCTGCATCT--------TGGG--------TCTCCCCCATGGTCCCCCACAGCCCT-CCTCTAAGGGCCACATACCTTTCCCCACAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGCGCCCGAGTCCATCCTCTCCCTCGCCTCCGACTCTTCTTCAAGACTGAGATCAGAGTGTACAAAAGGATTGGCACACAGGCTTAGGTCTCTCATCTCTCCCACCACCCTTATGCCCAAGACCAGGTGC-CCCCTTGTCGACAAGCCTCTCTGTTCTCC--CATTTG----TCCCCTGCCAACTCACCTTTCCCTAGCTTCCCTC----------------------------CTCA-----------------------------------TTGCCCACTCACCACTACTAGGGTCCTGTGGAGTGCGGGGGTCCCGAGGGAAAGAGGTGAAAAGGACGACATGGAGCTGGGGATAGTGTTGGTGGAAATAGTGTTTCCAGGCAACCACAAGAGCTGGCGGGGCCAGATCCACCTTGTTC-AAAACCAGCACGAGGGCCAGCCCAAGTTCTCCAGTCACGTACTCATAAAGTGCTGGCGGGAAATTCACAACCTAGGACAGGGTTGGTAAGAGAATGGAGCAATGAGAGGTCAACCCAGAGTTCTCTGCCTCCAGC-TGCCCACTCAGCAGGCATAGCTCAGAGAAAAGACCCTGGCAGTAGCAGATTCTGGGCTGAAAACTA-TGAACTACCCAAACTGAACAACGAAGACAAAACAGGGGTTAGTAACA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1342216 1275 -   1771730 CCACTTCCTTACCCACACAACCGATGGTCACCACCCCATCCTTGTAGCGCTCCCGGGTTGGGCCAGTTGGCTCCATCGCTGAATCAGTCTGCTGCTCCACCAGGACTGCTGGCCCATCCTCTTCTTCCTCCTCCTCCCCAGAGCCATTACCCCAGGTGGCCCCAGCCACATCCCGAGCAATCTTCTCCCGCCAGCTGCTCAAGTCCACTGCTCAAAGAAAGAGAAGATGA--AGGAGGTTCTCCCca-----gggctgctgtgtacgatggcacata----ctgtgc-------cctgcacagatgatgtaagatggcaccctctggagttgtacagtgccaacctcaacaaAAGTAGGCCAGAGAACTCTCCCAGCAGTCACTTGACCCCTCCCTCCCTGAAATCATGCAC---ATATCTGTGTCTGAGTTTCTGAAAAGTACTGGGAAGGCTGAAGGCAGCAAGCCACTGAGGCTCCCAACTACCTGCTGCCTCTC--ATCCCACCAAGTCAATCTGCTCCTT-ATTCTTTCCCTTTCCCTGGCCTCTCGCACACATCCACCATAGAGGT-----------GGAAAGGTGAGCAAAATGATTCAGCGTCT--------TGGG--------TCTCACACACGGTCCCCAACAGCCCT-CCTCTAAGGGCCACATACCTTTCCCCACAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGGGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAAGACTGAGATCAGAGTGTACAAAAGGATTGGCACACAGGCTTAGGTCTCTCATCTCTCCCACCACCCTTAGGCCCAAGACCAGGTGC-CCCCTTGTCAACATGCCTCTCTGCTCTCC--CGTTTG----TCCCCTGCCAACTCACCTCTCCCTAGCTGCCCTC----------------------------CTCA-----------------------------------TTGCCCACTCACCACTACTAGGGTCCTGTGGAGTGCGGGGGTCCCGAGGGAAAGAGGTGAAAAGGACAACATGGAGCTGGGGATAGTGTTGGTGGAAATAGTGCTTCCAGGCAACCACAAGAGCTGGCGGGGCCAGATCCACCTTGTTC-AAAACCAGCACGAGGGCCAACCCAAGTTCTCCAGTCACGTACTCATAAAGTGCTGGCGGGAAATTCACAACCTAGGACAGGGTTGGTAAGAGAATGGAGCGATGAGAGGTCAACCCAGAGTTCTCTGCCTCCAGC-TGCCCACTCAGCAGGCATAGCTCAGAGACAAGACTCTGGCAGTAGCAGATACTGGGCTGAAAACTA-TAAACTACCCAAACTGAACAAGGAAGACAAAACAGGGGTTAGTAATA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      41246 1275 -    566255 CCACTTCCTTACCCACACAACCGATGGTCACCACCCCATCCTTATAGCGCTCCCGGGTTGGGCCAGTTGGCTCCATCGCTGAATCAGTCTGCTGCTCCACCAGGACCGCTGGCCCATCCTCTTCTTCCTCCTCCTCCCCGGAGCCATTACCCCAGGTGGCCCCAGCCACATCCCGAGCAATCTTCTCCCGCCAGCTGCTCAAGTCCACTGCTCAAAGAAGGAGGAGATGA--AGGAGGTTCTCCCCA-----GGTCTGCTGGGTATGATGGCACATA----CTGTGC-------CCTGCACAGATGATTTAAGATGGCACCCTCTGGAGTTGTACGGTGCCAACCCGAACAAAAGTAGGCCAGAGAACTCTCCCAGCAGTCACTTGACCCCACCCTCCCTGAAATCATGCAC---ATTTCTGTATCTGAGTTTCTGTAAAGTACCGGGAAGGCTGAAGGCAGCAAGCCACTGAGGCTCCCAACTACCTGCTGCCTCTC--ATCCCACCAAGTCAATCTGCTCCTT-ATTCTTTCCATTTCCCTGGCCTCTCGCACACATCCACCATAGAGGT-----------GGAAAGGTGAGCAAAATGATTCTGCATCT--------TGGG--------TCTCCCCTATGGTTCCCCACAGCCCT-CCTCTAAGGGCTACATACCTTTCCCCACAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGGGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAAGACTGAGATCAGAATGTACAAAAGGATTGGCACACAGGCTTAGGTTTCTCATCTCTCCCACCACCCTTAGGCCCAAGACCAGGTGC-CCCCTTGTCAACAAGCCTCTCTGTTCTCC--CCTTTG----TCCCCTGCCGACTCACCTCTCCCTCGCTGCCCTC----------------------------CTCA-----------------------------------TTGCCCACTCACCACTACTAGGGTCCTGTGGAGTGCAGGGGTCTCGAGGGAAAGAGGTGAAAAGGACGACATGGAGCTGGGGATAGTGTTGGTGGAAATAGTGCTTCCAGGCAACCACAAGAGCTGGCGGGGCCAGATCCACCTTGTTC-AAAACCAGCACGAGGGCCAGCCCAAGTTCTCCAGTCACATACTCATAAAGTGCTGGCGGGAAATTCACAACCTAGGACAGGGTTGGTAAGAGAATGGAGCGATGAGAGGTCAACCCAGAGTTCTCTGCCTCCAGC-TGCCCACTCAGCAGGCATAGCTCAGAGACAAGACCCTGGCAGTAGCAGATTCTGGGCTGAAAACTA-TAAACTACCCAAACTGAACAAGGAAGACAAAACAGGGGTTAGTAATA
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               656230 1251 + 123392446 CCACTTCCTTACCCACACAGCCGATGGTCACCACCCCATCCTTGTAGCGCTCCTGGGTTGGACCGGTTGGCTCCATCGCTGAATCAGTCTGCTGCTCCACCAGCACTGCTGGCCCATCCTCTTCTTCCTCCTCCTCCCCAGAGCCATCACCCCAGGTGGCCCCAGCCACATCCCGAGCAATCTTCTCCCGCCAGCTGCTCAGGTCCGCTGCTCAGAGAAGAAGATG--------GAGGTTTTCTCCA-----GGGCTGCCATACGTGATGGCACAGACTACGTACGC-------ACTGCACAACGgatgtga-ccgacaccctctggagttgtacagtggcaacctgaacaaTGGTGGGCCAGAGAA-TCTCCCCGTCTTCACTTG-----A----CCCTGGAATCATGAAC---ATTTCTTTGTCTGAGTTTCTGAAAAGTCCTGGGAAGACGAAAAGCAGCAAACCACT-AGGTTCCTGCCTACCTGCTGCCTCTCTTGTCCCACCAAGTCAGTCTGCTCCTT-ATTCCATCCTACCCCT-GGCCTCTTGTGCACATCCAAAATAGAGGGG-TTGTCTTCAGGAAAAGTGAGCAAAATGACTCTGGGCC---------TGGG--------TCTCCCTCATGGCCTCCCACATCCCT-CCTCTAAGGGCCACATACCTTTCCCCACAGTGATGGCCTCACAGGCTCTCAGCAGCTGCTCCGGCCCCAGGGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAAGACTGAGATCACAGGGCACAAAAAGG--------------TAGGCACTTCATCTCTTCTACCATCCTTAGGCCCAAGATCAGGTAC-CCCCTTGTCAATAAGCCTCTTTGTTC-TC--CCCTTT----GTCCCCGCCACCCCACCTCCCCCACGTTGCCCTC----------------------------CCCA-----------------------------------TTGTCCACTCACCACTACTAGGGTCCTGTGGGGTACGAGGGTCCCGAGGGAAAGAGGTGAAAAGGACGATGTGGAGCTGGGGGTAATGCTGGTGGAAATAATGCTTCCAGGCAACCACGAGGGCTGGTGGGGCCAGATCCACCTTGTTC-AGGACCAGCACCAGGGCCAGCCCAAGTTCTCCAGTCACATATTCATAAAGTGCTGGTGGGAAATTCACAACCTGGGACAGGGTTGGTAAGGGGATGGAGCAGTGAGAGGTCAACCCAGAGTCCTCTGCCTCCAGC-TCCCCGCTCAGCAGACACAGCTTGGAAACAAGGCCCTGGTGGTAGCAGATTCTGGACTGAAAATGG-TAAACCAGCC-----AAACAAGGAAGACAAAGCAGGGGTTAATTTTA
i micMur3.chr6             I 831 I 2
s proCoq1.NW_012149775v1     687797 1259 -   1411461 CCACTTCCTTACCCACACAGCCGATGGTCACCACCCCATCCTTGTAGCGCTCCCGGGTTGGGCCAGTTGGCTCCATCGCTGAATCGGTCTGCTGCTCCACCAGCACTGCTGGCCCATCCTCTTCTTCCTCCTCCTCCCCGGAGCCATTACCCCAGGTGGCCCCAGCCACATCCCGAGCAATCTTCTCCCGCCAGCTGCTCAGGTCCACTGCTCAGAGAAGAAGAT---------AAGGTTTTCCCCA-----GGGCTGCCATACATGATGGCACAGA---------------------CACAACtgatgtaa-ctgacaccctctggagttgtacggtggcaacctgaacaaTAGTGGGCCAGAGAA-TCTCCCTGTCTTCACTTGGCCCAA----CCCTGGAATCATGAAC---ATTTCTCTGTCTGAGTTTCTGAAAAGTCCTGGGAAGACTAAAAGAAGCAAACCACT-AGGCTCCTGCCTACTTGCTGCCTCTCTTGTCCCACCAAGCCAGCCTGCTCCTT-ACTGCATCCTAGCACT-GG-CTCTCGTGCACATCCAAAATAAAGGGG-TTGTCTTCAGGAAAGGTGAGCAAAACGACTCTGGGCC---------TGGG--------TCTCCCTCGTGGCCTCCCACATCCCT-CCTCTAAGGGCCACATACCTTTCCCCACAGTGATGGCCTCACAGGCTCTCAGCAACTGCTCCGGCCCCAGGGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAAGACTGAGATCACAGGGCACAGAAGGGTTTGCACACAGGCTTATGCACTTCATCTCTTCCACCACCCTTAGGCCCAAGATCAGGTAC-CCCCTTGTCAATAAGGCTCTTTGTTC-TC--CCTCTG----TCCTCTGCCATCCCACCTCCCCCATGTTGCCCTC----------------------------CTCA-----------------------------------TTGTCCACTCACCGCTACTAGGGTCCTGTGGGGTACGAGGGTCCCGAGGGAAAGAGGTGAAAAGGACGATGTGGAGCTGGGGATAGTGTTGGTGGAAATAATGCTTCCAGGCAACCACGAGAGCTGGTGGGGCCAGATCCACCTTGTTC-AGGACTAGCACCAGGGCCAGCCCAAGTTCTCCAGTCACGTACTCATAAAGTGCTGGTGGGAAATTCACAACCTGGGACAGGGTTGGTAAGGGGATGGAGCAGTGAGAGGTCAACCTAGAGTCCTCTGCCTCCAGC-TCCCTGCTCAGCAGACACTGCTTGGAGACGAGGCCCTGGCGGTAGCAAATTCTGGACTGAAAATGA-TAAACCAGCCAAACTAAACAAGGAAGACAAAGCAGGGGTTAATTTTA
i proCoq1.NW_012149775v1   C 0 I 16
s otoGar3.GL873550           707295 1260 +  18854210 CCACTTCCTTACCCACACAGCCGATGGTCACCACCCCATCCTTGTAGCGCTCCCGGGTTGGGCCAGTTGGCTCCATCGCTGAATCTGTCTGCTGTTCCACCAGGACTGCTGGCCCATCCTCCTCTTCCTCCTCCTCCCCTGAGCCATTACCCCAGGTGGCTCCAGCCACATCTCGAGCAATCTTCTCCCGCCAGCTGCTCAAGTCCACTGTTCAAAGAAGAAAATG--------AAAGTTCTTCCca-----gggctgctatatgcaatagcataga----ctatgc-------actgcacagctAACGTAA-CTGACACTCTCAGGTATAG----------ACCTGAACAATGGTGGGCCAGAGAA-TCTCCCAGCCTTCACGTGACCCAA----CCTTGAAATCATGAAC---ATTTCTTTGTCTGAGTTTCTGAAAAGTCCTGAGAAAACTAAAGGCAGCAAACCACTGAGGCTTCTGCCTACCAGCTGCCTCTCTTATCCTTCCAACTCAGTCTTCTCC-T-ATATCATTCTACCCCT-GACCTCTCATGCACATCTATAATAGAGGGG-TTGTTTTCAGGAAAGGTAAGCAAAATTACTCTAGGCCT--------TAGA--------TCTCCTTCATGTCCTCCCACATCCGT-TCTCTAAGGGCCACATACCTTTCCCCACAGTGATAGCCTCACAGGCTCTCAGCAGTTGCTCAGGTCCCAGGGCTCGAGTCCATCCTCTTCCCCTCCTCCGACTTTTCTTCAAGACTAAAATCACAGGGCACAAAAGGGTTAGCACACAGGC-TATACACTTCATCTCTTCCACCACATTTAGGTCCAAGATCAGGTACTCTTCTTGTCAGTAAGTCTCTAAGTTCTTT--CCTCTG----TCCCCCACTTCCCCACCTCTTCCATGTTGCCCTC----------------------------CTTG-----------------------------------TTGTCTACTTACCACTACTAGGGTCCTGTGGGGTACGGGGGTCCCGAGGGAAAGAGGTGAAAAGGACGATATGGAGCTGGGGATAGTGTTGATGGAAATAATGTTTCCAGGCAACCACGAGAGCTGGTGGGGCCAGATCCACCTTGTTC-AGGACCAGCACCAGCGCCAGCCCAAGTTCTCCAGTCACATACTCATAAAGTGCTGGTGGGAAATTCACAACCTGGGGGAGTATTGGTAAAAGGATGGAGCAGTGAGAGGTCAACCCAAAGTTCTCTGCCTCTAGCTTCCCCACTCAGCATA----GCTTGGAGACAAAGCCTTGGTGGTAGCAGATTCTGGGCTGAAAATGG-TAAACCAGCCAAACTAAACAAGGAAGACAAATCAGAGGTTAATTAAA
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               59003670 1241 -  94987271 CTGAGTCCTTACCTATACAGCCAATAGTCACCACCCCATCCTTGTAGCGCTCCCTGGAGGGGCCTGTGGGCTCCATGGCTGAGTCGGTCAGCTGCTCTACCAGTACTGCTGGCCCGTCTTCCTCCTCCTCTTCCTCACCGGAGACGTTACCCCAGGAGGCTCCAGCCACGTCCCTAGCAATCTTCTCGCGCCAGCTGCTCAAGTCCACTGTTTGAAGAA---GAAAACAG--AGGACGTTTCCCTCATCCCCGGGC-------CACGATGGTTCATG-----------------AACACACAGCTGATGTCA-CCATCATGC-CAAGAATCATGGAGTGCCAATGTGTACTGTGGCAGACCAGAGT--TTCCCCAGCTTTCTCAGGACCCCA----CTCTGGAGTCACAGATGGAGTCTCTCCATCAGCACATCTACGACTT----------CTCAGGACATCAAACCACAGAGGCCCCTGCCCACTC-CTGACTCTC----------------------TCCTT--------CCCACCATCTGGC---------------------GAGGG-----------GTGGGGGTGGGGGACCTTATTCTACAACTTTCCTAAGTGTG--------TATATTAGAGGGGCATCCAGAGCCTTCCCTCCAAGGACTACATACCTTTCCCCACAGTGATAGCTTCACAGGCTCTCAGCAACTGCTCTGGTCCCAGTGCCCGAGTCCATCCTTTCCCCCGTCTCCGATTCTTCTTCAAGACTGAGATGAGAGAGTGAAGA------------------TGTGCCTCTT---TCTCCTGCTGCCCTCAGGCCCAC-ATCAGGTGC---CCTTGCCAACCAACCTCTCTGTTccccaacccctgctcatcctccccccccctgccccgccccggaccccccccccaccaccaccACcacacacacacactctcacacacacacacacacacCCGCCAACACCTTCTCTGCAGCTCACTCACCACCACCAGGCTCCTGTGGAGTGCGCGTGTCCCGAGGGAAAGAGGTGAACAAGACAATGTGGAGCTGGGGGTAGCACTGGTGAAAATAATGCTTCCAGGCAACCACGAGAGCCGGCGGGGCCAGGTCCACCTTGTTC-AAGACCAGCACCAGGGCCAGCCCAAGCTCTCCAGTTACATACTCGTAAAGTGCTGGTGGGAAGTTCACAACCTGTGACACAATTGATAAGAGGACAGAGTGACAAGAAGCGAGTCAAGAGTTTGCTGACCCCAGC-TCCCTG-TCACCAGGCACAGCT-------------CTGGCAGAAGTAGATTCTGTGGTGAAAACAGTTAACCCAGCCGCACCAAGCAGGGAAGGCAAAGCAGGTATTAATAACA
i mm10.chr17               C 0 C 0
s canFam3.chr12              379497 1274 +  72498081 CCGCATCCTTACCCACACAGCCGATGGTCACCACCCCGTCTTTGTAGTGCTCCTGGGTCGGGCCGGTTGGCTCCATTGCTGAGTCAGTCTGCTGTTCCACCAGCACTGCAGGCCCATCCTCTTCCTCCTCCTCCTCCCCAGAGCCATTTCCCCAGGTGGCCCCAGCCACATCTCGAGCAATCTTCTCCCGCCAGCTGCTTAAGTCCACTGTTCAAGGAAGGATAAGATGATGAAGATTCTCTCCCCA-----GGGCCATCACAGATGATTGCACAGA----CTATGC-------ACTGCACAGCtaatgtaa-ctggcaccctctggagttggagagtgccaaccta--------caGGACAGATTC-TC-CCCGGCCTTCACTTGACCCCA----CCTAGAAATCACGTGA---ATT------TTTGAGTTTCGGAAAAATACTAGGAAGACTGAAGGCAACAGACCACTGGGGCTCCTGCCTACTTGCTACCTTTG--ATTCCACCAAGTTAATCTGCTCCCT-CTTCTATACCTCCTCCTGGTCGCTCGCCTACAATCATAATAGAAGGGACTGACTTCAGGGAAGGTAAGCAAAATGACTCCAGGCCT--------TGGGAGTCATGTCCTCCCCCATATCCTCCCACCGCTCC-TCTCCAAGAGGTATATACCTTTCCCTGCAGTGATGGCTTCACAGGCTCTCAGCAACTGCTCTGGCCCCAGGGCCCGAGTCCATCCTCTCCCCCGCCTCCGACTCTTCTTCAACACTGAGAGTATAGAGTACAAAAGTGTCAGCATGTGGGCTTATACACCCCATCTCACCCACCACCCTTAGGCCTGAGATCAGGGAC-TCCTTTGTCAACAAGCCTCTCTGTTCTCC--CTGTTG----TCCCTTGTCACCCCACCCTTCCCATGCTGCCTTC----------------------------CTCA-----------------------------------TTGCCTACTCACCGCTACTAGGGTCCTGTGGGGTGCGGGGGTCCCGAGGGAAAGAGGTAAAAAGGACTATGTGGAGTTGAGGATAGTGTTGATGAAAATAATGCTTCCAGGCAACCACGAGAGCTGGTGGGGCTAGATCCACCTTGTTC-AGGACCAAGACCAAGGCCAACCCAAGTTCTCCAGTCACGTACTCATAAAGTGCTGGTGGGAAATTCACAACCTGGGGCAGGATTAGTGAGAGGAGGGAGCAATGAGAGATCAACCCAGAGTTCTCTGCTTCCAGC-TCCCCACTCACCAGGGACGACTCAGAGACAAGACTCTGGTGGTAGCAGATT-TGGGGGCAAAACAG-TAAATCAGCAAAACTGAACTAGGAAGATAAAGCAGCAGTAAGCAATA
i canFam3.chr12            C 0 C 0

a score=183367.000000
s hg38.chr6_GL000254v2_alt  1897779 15 +   4827813 CTTCTG----AGTCTCAGA
s panTro5.chr6             30743449 15 + 175400573 CTTCTG----AGTCTCAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31167077 15 + 173848474 CTTCTG----AGTCTCAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     674073 15 +   2037526 CTTCTG----AGTCTCAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75342680 15 + 122973662 CTTCTG----AGTCTCAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31254164 15 + 172585720 TTTCTG----AGTCTCAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30543171 15 - 170955103 TTTCTG----AGTCTCAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     839457 15 +   1495729 TTTCTG----AGTCTCAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      62589 15 -    811324 TTTCTG----AGTCTCAGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30093116 15 -  71996105 TTTCTG----AGTCTCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      99900 15 +    779361 TTTCTG----AGTCTCAGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     763321 15 -   1829203 TTTCTG----AGTCTCAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30923915 15 + 171630274 CTTCTG----AGTTTCAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            95518 15 -    750284 TTTCTG----AGTCTCAGG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1343491 15 -   1771730 CTTCTG----AGTCTCAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      42521 15 -    566255 CTTCTG----AGTCTCAGG
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               657483 15 + 123392446 TCTGTG----AGCCTTGGG
i micMur3.chr6             I 2 C 0
s otoGar3.GL873550           708557 15 +  18854210 TGTTTG----AGTCTCAGG
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               59004911 18 -  94987271 -ACCTGGGCAGGCCTCAGG
i mm10.chr17               C 0 C 0
s canFam3.chr12              380771 19 +  72498081 CCTGTGCATTTGTCTCTGG
i canFam3.chr12            C 0 C 0
e proCoq1.NW_012149775v1     689056 16 -   1411461 I

a score=2860562.000000
s hg38.chr6_GL000254v2_alt  1897794 245 +   4827813 -GGGCTTCCTATAGGTCATGATTAGAG--ATGGAAATGAACCCAAAACAAGACAAGGAAACAGCATCACTTAGCACACTGAGGTAAAGGCTGGGATCGGAAACAGGGATGGGGGTTAGGGTAGAAATTAGT--CTGCTT--TTTTGTGTGTGCACAACTATGTAAGTGTGTACACGTGC--ATAT----ATGCATGCATGCAAGTACGTGCACATGTGTGCATGTTTGTG-TGTT---AA--TGTGACTGTGAAC----ATGTGTGCA
s panTro5.chr6             30743464 245 + 175400573 -GGGCTTCCTATAGGTCACGATTAGAG--ATGGAAATGAACCCAAAACAAGACAAGGAAACAGCATCACTTAGCACACTGAGGTAAAGGCTGGGATCGGAAACAGGGATGGGGGTTAGGGTAGAAATTAGT--GTGCTT--TTTTGTGTGTGCACAACTATATAAGTGTGTACACGTGC--ATAT----ATGCATGCATGCAAGTACGTGCACATGTGTGCATGTTTGTG-TGTT---AA--TGTGACTGTGAAC----ATGTGTGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31167092 245 + 173848474 -GGGCTTCCTATAGGTCACGATTAGAG--ATGGAAATGAACCCAAAACAAGACAAGGAAACAGCATCACTTAGCACACTGAGGTAAAGGCTGGGATCGGAAACAGGGATGGGGGTTAGGGTAGAAATTAGT--GTGCTT--TTTTGTGTGTGCACAACTATATAAGTGTGTACACGTGC--ATAT----ATGCATGCATGCAAGTACGTGCACATGTGTGCATGTTTGTG-TGTT---AA--TGTGACTATGAAC----ATGTGTGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     674088 245 +   2037526 -GGGCTTCCTATAGGTCATGATTAGAG--ATGGAAATGAACCCAAAACAAGACAAGGAAACAGCATCACTCAGCACACTGAGGTAAAGGCTGGGATCGGAAACAGGGATGGGGGTTAGGGTAGAAATTAGT--CTGCTT--TTTTGTGTGTGCACAACTATATAAGTGTGTACACGtgc--atat----atgcatgcatgcaagtacatgcacatgtgtgcatgTTTGTG-TGTT---AA--TGTGACTGTGAAC----ATGTGTGCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75342695 247 + 122973662 -GGGCTTCCTGTAGGTCATGATTAGAG--ATGGAAATGAACCCAAAACAAGGCAAGGAAACAGCACCACTTAGCACACTGAGGTAAAGGCTGGGATCGGAAACAGGGATGGGGATTAGGGTAGAAATTAGT--CTG--T--TTTTATGTGCGCACAACTATGTAAGTGTGTACAcatgc--atatatgcatgcatgcatgcaAGTACGTGCACATGtgtgcatgtttgtg-tgtt---aa--tgtgactgtgaac----atgtgtgca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31254179 230 + 172585720 -GGGCTTCCTATAGGTCATGATTAGAG--ATGGAAATGAACCCAAAACAAGACAAGGAAACAGCGTCACTTAGCACACTGAGGTAAAGGCTGGGATCGGAAATAGGGATGGGTGTTAGGGTAACAATTAGT--CTG--C--TTTTGTGTGCGCACAACTATATAAGTGTGTACA----------------------CATGCAAGTACATGCACTAGTGTGCATGTTCGTG-TGTTAACAA--TGTGACTGTGAAC----ATGTGTGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30543186 230 - 170955103 -GGGCTTCCTATAGGTCATGATTAGAG--ATGGAAATGAACCCAAAACAAGACAAGGAAACAGCGTCACTTAGCACACTGAGGTAAAGGCTGGGATCGGAAATAGGGATGGGTGTTAGGGTAACAATTAGT--CTG--C--TTTTGTGTGCGCACAACTATATAAGTGTGTACA----------------------CATGCAAGTACATGCACTCGTGTGCATGTTCGTG-TGTTAACAA--TGTGACTGTGAAC----ATGTGTGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     839472 230 +   1495729 -GGGCTTCCTATAGGTCATGATTAGAG--ATGGAAATGAACCCAAAACAAGACAAGGAAACAGCGTCACTCAGCACACTGAGGTAAAGGATGGGATCGGAAATAGGGATGGGTGTTAGGGTAACAATTAGT--CTG--C--TTTTGTGTGCGCACAACTATATAAGTGTGTACA----------------------CATGCAAGTACATGCACTCGTGTGCATGTTCGTG-TGTTAACAA--TGTGACTGTGAAC----ATGTGTGCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      62604 230 -    811324 -GGGCTTCCTATAGGTCATGATTAGAG--ATGGAAATGAACCCAAAACAAGACAAGGAAACAGCGTCACTTAGCACACTGAGGTAAAGACTGGGATCGGAAATAGGGATGGGTGTTAGGGTAACAATTAGT--CTG--C--TTTTGTGTGCGCACAACTATATAAGTGTGTATA----------------------CATGCAAGTACATGCACTCGTGTGCATGTTCGTG-TGTTAACAA--TGTGACTGTGAAC----ATGTGTGCA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30093131 230 -  71996105 -GGGCTTCCTATAGGTCATGATTAGAG--ATGAAAATGAACCCAAAACAAGACAAGGAAACAGCGTCACTTAGCACACTGAGGTAAAGGCTGGGATCGGAAATAGGGATGGGTGTTAGGGTAACAATTAGT--CTG--C--TTTTGTGTGCGCACAACTATATAAGTGTGTACA----------------------CATGCAAGTACATGCACTCGTGTGCATGTTCGTG-TGTTAACAA--TGTAACTGTGAAC----ATGTGTGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      99915 230 +    779361 -GAGCTTCCTATAGGTCATGATTAGAC--ATGGAAATGAACCCAAAACAAGACAAGGAAACAGCGTCACTTAGCACACTGAGGTAAAGGCTGGGATCGGAAATAGGGATGGGTGTTAGAGTAACAATTAGT--CTG--C--TTTTGTGTGCGCACAACTATATAAGTGTGTATA----------------------CATGCAAGTACATGCACTCGTGTGCATGTTCGTG-TGTTAACAA--TGTGACTGTGAAC----ATGTGTGCA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     763336 230 -   1829203 -GGGCTTCCTATAGGTCATGATTAGAG--ATGGAAATGAACCCAAAACAAGACAAGGAAACAGCATCACTTAGCACACTGAGGTAAAGGCTGGGATCGGAAATAGGGATGGGGGTTAGGGTAACAATTAGT--CTG--C--TTTTGTGTGCGCACAACTATATAAGTGTGTACA----------------------CATGCAAGTACATGCACATGTGTGCATGTTCGTG-CGTTAACAA--TGTGACTGTGAAC----ATGTGTGCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30923930 244 + 171630274 -GGGCTTCCTATAGGTCATGATTAGAG--ATGGAAAT-AACCCAAAACAAGACAAGGAAACAGCATCCCTTAGCACACTGAGGTAAAGGCTGGGATCGGAAATAGGGAT-GGGGTTAGGGTAGAAATTAGT--CTG--T--TTTtgtgtgcatacaaccatgtaagtgtgtacatatgc--attt----atgcatgcatgcaagtacgtgcccatgtgtgcatgtctgtg-tattaagaa--tgtgactgtgaaa----atgtgtgca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            95533 246 -    750284 -GGGCTTCCTATAGGTCATGATTAGAA--ATGGAAATAAAACCAAAACAAGACAAGGAAACAGCATCCCTTAGCACACTGAGGTAAAGGCTGGGATCGGAAATAGGGATGGGGGTTAGGGTAGAAATTAGT--CTG--T--TTTtgtgtgcatacaactatgtaaatgtatacatacac--acat----atgcatgcatgcaagtacgtgcccatgtgtgcatgtctgtg-tgttaagaa--tgtgactgtgaaa----atgtgtgca
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1343506 238 -   1771730 -AGGCTTCCTATACGTCATGATTAGAG--ATGGAAATAAACCCAAAACAAGACAAGGAAACAGCATCCCTTAGCACACTGAGGTAAAGGCTGGGATCGGAAATAGGGATGGGGGTTAGGGTAGAAATTAGT--CTG--T--TTTTGTGTGCATACAACTATGTAAGTGTGTACA----------T----ATGCATGCATGCAAGTACGTGCCCATGTGTGCATGTCTGTG-TGTTAAGAA--TGTGACTGTGAAC----ATGTGTGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      42536 248 -    566255 -GGGCTTCCTATAGGTCATGATTAGAG--ATGGAAATAAACCCAAAACAAGACAAGGAAACAGCACCTCTTAGCACACTGAGGTAAAGGCTGGGATCGGAAATAGAGATGGGGGTTAGGGTAGAAATTAGT--CTG--T--TTCTGTGTACATACATCTATGTAAGCGTGTACATATGCATATAT----ATGCATGCATGCAAGTACGTGCCCATGTGTGCATGTCTGTG-TGTTAAGAA--TGTGACTGTGAAA----ATGTGTGCA
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               657498 254 + 123392446 --GGGTTCCTATAGGTCATGATTAGAG--ATGGAAACAAACCAAAAACAGGACAAGGAAATAACGACACTTAACACACTGAGATAAAGGACGGGATCAGAAACACAGATGGGGGTTGGGGTAGAAATTAAC--ATG--T--TTTcatgtgcac---actgtgtaagtgtatatacatgcaaatgcaaaggtgcatatgtgcaagcacatgcacatgtgtgcatgtttgtg-tgttaagcacgtgtgaatgttaatttgaatgtatgca
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     689072 210 -   1411461 -GGGTTTCCTATAGGTCATGATTAGAG--ATGGAAACAAACTGAAAACAGGACAAGGAAATAACGACACTTAACACACTGAGGTAAAGGATGGGATCAGAAACAGAGATGGGGGTTGGGGTAGAAATTAAT--ATC--T-----------------GCTGTGTAAGTGTGTAcacaggcaaatga------gcatacatgcaagcacatgcaca----------------------------tgTGAATGTGAATTTGAGTGTATGCA
i proCoq1.NW_012149775v1   I 16 C 0
s otoGar3.GL873550           708572 228 +  18854210 -GGGGTTCCTACAAGTCATGATTAAAG--ATGGAACCAAACCAAAAAACAGACAGGGAAACAGTGACACGTAGCACACTGAGGTAAAGGCTGGGCTCAGAAACAGAGATGGGGGATGGAGCAGAAATCAGT--ATC--TATTTTCATGtgcat---actgt----atgtgcatacatgcaaatgt------gcatacatgcaagcatgtgcatt--------------------cactcatttatgTGAGTGAATTTGAGTGTACTGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59004929 195 -  94987271 -GAGCTTCCTGCAGGTCATGATGAGAGAAATGGAGGCAAGTCTGACA-----------------ATATCTGAGTGCACTGAGGTGATGACAG---TCAGGAACAGGGACAGGGACCAG-GTAAGAAGTACA--CAG--C--T---------------CTATGCACGCGTGTACATGTCT--GTGT---------------TAGGTGTGTATGGCTGTGTACAT---CATA-TGTG---CA--TGTGACAAGGATC----AGAGATGAA
i mm10.chr17               C 0 I 403
s canFam3.chr12              380790 228 +  72498081 GGGATTTCTTACAGGTCCTGATTAGGG--ATGAAAATGAGCCCAAAACAAGACAAGCAAATAGTTGTACCTAGCAAACTAGCATGAAGGTTGGGGTCAGGCAT-GGGGTGGGAGTTGGCATAAAACTTAATACCTG--T--TTTtgtatgcacacatctatgca----tataca------------------catgcatgtatgagcgtgcacatgtctgcatgtttgtgatgctta-tg--tgtggctgt--------gtgagtgca
i canFam3.chr12            C 0 C 0

a score=415834.000000
s hg38.chr6_GL000254v2_alt  1898039 31 +   4827813 AACATGCCTGTGTATATTGATGTGCACATGA
s panTro5.chr6             30743709 31 + 175400573 AACATGCCTGTGTATATTGATGTGCACATGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31167337 31 + 173848474 AACATGCCTGTGTATATTGATGTGCACATGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     674333 31 +   2037526 AACATGCCTGTGTATATTGATGTGCACATGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75342942 31 + 122973662 aacatgcctgtgtatactgatgtgcacatga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31254409 31 + 172585720 AACATGCCTGTGTATATTGATGTGCACATGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30543416 31 - 170955103 AACATGCCTGTGTATATTGATGTGCACATGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     839702 31 +   1495729 AACATGCCTGTGTATATTGATGTGCACATGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      62834 31 -    811324 AACATGCCTGTGTATACTGATGTGCACATGA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30093361 30 -  71996105 AACATGCCTGTGTATATTGATGTGCACATG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     100145 31 +    779361 AACATGCCtgtgtatattgatgtgcacatga
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     763566 31 -   1829203 AACATGCCTGTGTATATTGATTTGCACATGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30924174 31 + 171630274 aacatgcctgtgtatactgatatgcacatga
i calJac3.chr4             C 0 I 9
s saiBol1.JH378327            95779 31 -    750284 aacatgcctatgtatattgatgtgcacatga
i saiBol1.JH378327         C 0 I 9
s cebCap1.NW_016107755v1    1343744 31 -   1771730 AACATGCCCGTGTATATTGATGTGCACATGA
i cebCap1.NW_016107755v1   C 0 I 9
s aotNan1.NW_018511496v1      42784 31 -    566255 AACATGCCTGTGTATATTGATGTGCACAAGA
i aotNan1.NW_018511496v1   C 0 I 5
s micMur3.chr6               657752 31 + 123392446 cacatacctgtgtgtacagatgtgcacgtgc
i micMur3.chr6             C 0 I 9
s proCoq1.NW_012149775v1     689282 31 -   1411461 AACATACCTGTGTGTGCAGATGTGCACATGT
i proCoq1.NW_012149775v1   C 0 I 7
s otoGar3.GL873550           708800 31 +  18854210 AGTGTACCTGTGTATACAGATATGCACATGC
i otoGar3.GL873550         C 0 I 6
s canFam3.chr12              381018 27 +  72498081 cacaagcaaacacatgtttgtgagtac----
i canFam3.chr12            C 0 C 0
e mm10.chr17               59005124 403 -  94987271 I

a score=21833.000000
s hg38.chr6_GL000254v2_alt  1898070 10 +   4827813 -TGTACGTGTG
s panTro5.chr6             30743740 10 + 175400573 -TGTACGTGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31167368 10 + 173848474 -TGTACGTGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     674364 10 +   2037526 -TGTACGTGTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75342973  7 + 122973662 -tgtacgt---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31254440 10 + 172585720 -TATATGTGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30543447 10 - 170955103 -TGTATGTGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     839733 10 +   1495729 -TGTACGTGTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      62865 10 -    811324 -TGTATGTGTC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30093391  7 -  71996105 ----ATGTGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     100176 10 +    779361 -tgtatgtgtc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     763597 10 -   1829203 -TGTATGTGTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30924214 10 + 171630274 -tgtgtttgtg
i calJac3.chr4             I 9 C 0
s saiBol1.JH378327            95819 10 -    750284 -tgtgtttgtg
i saiBol1.JH378327         I 9 C 0
s cebCap1.NW_016107755v1    1343784 10 -   1771730 -TGTGTTTGTG
i cebCap1.NW_016107755v1   I 9 C 0
s micMur3.chr6               657792  8 + 123392446 -tgtttgtg--
i micMur3.chr6             I 9 C 0
s proCoq1.NW_012149775v1     689320  8 -   1411461 -TGTTTGTG--
i proCoq1.NW_012149775v1   I 7 C 0
s otoGar3.GL873550           708837  5 +  18854210 ----TTGTG--
i otoGar3.GL873550         I 6 C 0
s canFam3.chr12              381045  7 +  72498081 gcgcaaa----
i canFam3.chr12            C 0 C 0
e mm10.chr17               59005124 403 -  94987271 I
e aotNan1.NW_018511496v1      42815  5 -    566255 I

a score=4256839.000000
s hg38.chr6_GL000254v2_alt  1898080 302 +   4827813 AGTA----TGTGTGTGTACATATTATT---AAGGACCTCCAACCTAAATG---------------------------------------------------------------------------GTCCTCACAGACCTCCCTTTCTCCCACTGGAGGACAAGAGTGaagttgcagagctaggattcacac-agggcagtccagcagc--agtctacagccttaactactactctaGCATTCCAGGTGG------GTTCTGTAGCAACTGATGTGGCAGTGCTAGAGAAATGAGATAAGGAAGAAAGGGCATCTTTGGGCTGGGCAGGAGGAAGTCCCCAGC-TGCATTCATAGAATCCC-TGGAGCTCCAACACTTGGATTTTCTATTGGT----CTG
s panTro5.chr6             30743750 302 + 175400573 AGTA----TGTGTGTGTACATATTATT---AAGGACCTCCAACCTAAATG---------------------------------------------------------------------------GTCCTCACAGACCTCCCTTTCTCCCACTGGAGGACAAGAGTGaagttgcagagctaggattcacac-agggcagtccagcagc--agtctacagccttaactactactctaGCATTCCAGGTGG------GTTCTGTAGCAACTGATGTGGCAGTGCTAGAGAAATGAGATAAGGAAGAAAGGGCATCTTTGGGCTGGGCAGGAGGAAGTCCCCAGC-TGCATTCATAGAATCCC-TGGAGCTCCAACACTTGGATTTTCTATTGGT----CTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31167378 302 + 173848474 AGTA----TGTGTGTGTACATATTATT---AAGGACCTCCAACCTAAATG---------------------------------------------------------------------------GTCCTCACAGACCTCCCTTTCTCCCACTGGAGGACAAGAGTGaagttgcagagctaggattcacac-agggcagtccagcagc--agtctacagccttaactactactctaGCATTCCAGGTGG------GTTCTGTAGCAACTGATGTGGCAGTGCTAGAGAAATGAGATAAGGAAGAAAGGGCATCTTTGGGCTGGGCAGGAGGAAGTCCCCAGC-TGCATTCATAGAATCCC-TGGAGCTCCAACACTTGGATTTTCTATTGGT----CTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     674374 302 +   2037526 AGTA----TGTGTGTGTACATATTATT---AAGGACCTCCAACCTAAATG---------------------------------------------------------------------------GTCCTCACAGACCTCCCTTTCTCCCACTGGAGGACAAGAGTGaagttgcagagctaggattcacac-agggcagtccagcagc--agtctacagccttaactactactctaGCATTCCAGGTGG------GTTCTGTAGCAACTGATGTGGCAGTGCTAGAGAAATGAGATAAGGAAGAAAGGGCATCTTTGGGCTGGGCAGGAGGAAGTCCCCAGC-TGCATTCATAGAATCCC-TGGAGCTCCAACAGTTGGATTTTCTATTGGT----CTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75342980 301 + 122973662 -gta----tgtgtgtgtACATATTATT---AAGGACCTCCAACCTAAATG---------------------------------------------------------------------------GTCCTCACAGACCTCCCTTTCTCCCACTGGAGGACAAGAGTGaagttgcagagctaggattcacac-agggcagtccagcagc--agtctacagccttaactactactctaGCATTCCAGGTGG------GTTCTGTAGCAACTGATGTGGCAGTGCTAGAGAAATGAGATAAAGAAGAAGGGGCATCTTTGGGCTGAGCAGGAGGAAGCCCCCAACTTGCATTCATAGAATCCC-TGGAGCTCC-ACACTTGGATTTTCTATTGGT----CTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31254450 309 + 172585720 AGTACATGTGTGTGTGTACACATTGTT---AAGGACCTCCAACCTAAACG---------------------------------------------------------------------------GTCCTCACAGACCTCCCTTTCTCCCACTGGAGGACAAGAGTGaagttgcagagctaggattcatac-agggcagtccagcagc--agtctacagccttaactactactctaCGATTCCAGGTGG------GTTCTGTAGCAACTGATGCGGCAGTACTAGAGAAATGAGATAAGGAAGAAAGGGCATCTTTGGGCTGGGCAGGAGGAAGCCCCCAAT-TGCATTCATAGAATCCC-TGGAGCTCC-ACACTTGGATTTTCTGTTGGTCTAACTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30543457 309 - 170955103 AGTACATGTGTGTGTGTACACATTGTT---AAGGACCTCCAACCTAAACG---------------------------------------------------------------------------GTCCTCACAGACCTCCCTTTCTCCCACTGGAGGACAAGAGTGaagttgcagagctaggattcatac-agggcagtccagcagc--agtctacagccttaactactactctaCGATTCCAGGTGG------GTTCTGTAGCAACTGATGCGGCAGTACTAGAGAAATGAGATAAGGAAGAAAGGGCATCTTTGGGCTGGGCAGGAGGAAGCCCCCAAT-TGCATTCATAGAATCCC-TGGAGCTCC-ACACTTGGATTTTCTGTTGGTCTAACTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     839743 309 +   1495729 AGTACATGTGTGTGTGTACACATTGTT---AAGGACCTCCAACCTAAACG---------------------------------------------------------------------------GTCCTCACAGACCTCCCTTTCTCCCACTGGAGGACAAGAGTGaagttgcagagctaggattcatac-agggcagtccagcagc--agtctacagccttaactactactctaCGATTCCAGGTGG------GTTCTGTAGCAACTGATGCGGCAGTACTAGAGAAATGAGATAAGGAAGAAAGGGCATCTTTGGGCTGGGCAGGAGGAAGCCCCCAAT-TGCATTCATAGAATCCC-TGAAGCTCC-ACACTTGGATTTTCTGTTGGTCTAACTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      62875 309 -    811324 AGTACATGTGTGTGTGTACACATTGTT---AAGGACCTCCAACCTAAACG---------------------------------------------------------------------------GTCCTCACAGACCTCCCTTTCTCCCACTGGAGGACAAGAGTGaagttgcagagctaggattcatac-agggcagtccagcagc--agtctacagccttaactactactctaCGATTCCAGGTGG------GTTCTGTAGCAACTGATGCGGCAGTACTAGAGAAATGAGACAAGGAAGAAAGGGCATCTTGGGGCTGGGCAGGAGGAAGCCCCCAAT-TGCATTCATAGAACCCC-TGGAGCTCC-ACACTTGGATTTTCTGTTGGTCTAACTG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30093398 307 -  71996105 AGTAC--GTGTGTGTGTACACATTGTT---AAGGACCTCCAACCTAAACG---------------------------------------------------------------------------GTCCTCACAGACCTCCCTTTCTCCCACTGGAGGACAAGAGTGaagttgcagagctaggattcatac-agggcagtccagcagc--agtctacagccttaactactactctaCGATTCCAGGTGG------GTTCTGTAGCAACTGATGTGGCAGTACTAGAGAAATGAGATAAGGAAGAAAGGGCATCTTTGGGCTGGGCAGGAGGAAGCCCCCAAT-TGCATTCATAGAATCCC-TGGAGCTCC-ACACTTGGATTTTCTGTTGGTCTAACTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     100186 309 +    779361 agtacatgtgtgtgtgtaCACATTGTT---AAGGACCTCCAACCTAAACG---------------------------------------------------------------------------GTCCTCACAGACCTCCCTTTCTCCCACTGGAGGACAAGAGTGaagttgcagagctaggattcatac-agggcagtccagcagc--agtctacagccttaactactactctaCGATTCCAGGTGG------GTTCTGTAGCAACTGATGCGGCAGTACTAAAGAAATGAGATAAGGAAGAAAGGGCATCTTGGGGCTGGGCAGGAGGAAGCCCCCAAT-TGCATTCATAGAACCCC-TGGAGCTCC-ACACTTGGATTTTCTGTTGGTCTAACTG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     763607 309 -   1829203 AGTACATGTGTGTGTGTACACACTGTT---AAGGACCTCCAACCTAAACG---------------------------------------------------------------------------GTCCTCACAGACCTCCCTTTCTCCCACTGGAGGACAAGAGTGaagttgcagagctaggattcacac-aaggcagtccagcagc--agtctacagccttaactactactctaCGATTCCAGGTGG------GTTCTGTAGCAACTGATGCAGCAGTACTAGAGAAATGAGATAAGGAAGAAAGGGCATCTTTGGGCTGGGCAGGAGGAAGCCCCCTGT-TGCATTCATAGGATCCC-TGGAGCTCC-ACACTTGGATTTTCTGTTGGTCTAACTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30924224 305 + 171630274 ------agtatgtgtgtatatatCATTAAGAAGGAGCTCCAATCTAAAC----------------------------------------------------------------------------GTCCTCACAGACCTCTCTTTCTCCCACTTGAGGACAAGAGTGaagtggcagagccaggattcacac-tgggcagtccagcagc--agtctacagccttaactactactctaGCATTCCAGGTAG------GTTCAGTAGCAACTGATATGGCTGTGCTAGAGAAATGAGATAAGGAAGAAAGGGCATCTTTGGGCTGGGCAGGAGAAAGTGCCCAAC-TGCATTCATAGAATCCC-TTGAGCTCC-ACACTTGGATTTTCTATTGGTCTAACTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            95829 302 -    750284 ------agcatgtgtgtacatatCATT---AAGGAGTCCCAACCTAAAC----------------------------------------------------------------------------ATTCTCACAGACCTCTCTTTCTCCCACTAGAGGACAAGAGTGaagtggcagagccaagattcacac-agggcagtccagcagc--agtctacagccttaactactactctaGCATTCCAGGTAG------GTTCAGTAGCAACTGATGTGGCTGTGCTAGAGAAATGAGATAAGGAAGAAAGGGCATCTTTGGGCTGGGCAGGAGGAAGCCCCCAAC-TGCATTCATAGAATCCC-TTGAGCTCC-ACACTTGGATTTTCTGTTGGTCTAACTG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1343794 301 -   1771730 ------AGTATGTGTGTACATATCATT---AAGGAGCTCCAACCTAAAC----------------------------------------------------------------------------GTCCTCACAGACCTCTCTTTCTCCCACTAGAGGACAAGAGTGaagtggcggagccaggattcacac-agggcagtccagcagc--agtctacagcctt-actactactctaGCATTCCAGGTAG------CTTCAGTAGCAACTGATGCGGCTGTGCTAAAGAAATGAGATAAGGAAGAAAGGGCATCTTTGGGCTGGGCAAGAGGAAGCCCCCAAC-TGCATTCATAGAATCCC-TTGAGCTCC-ACACTTGGATTTTCTGTTCGTCTAATTG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      42820 300 -    566255 ------AGTATGTGTGTACATAACATT---AAGGAGCTCCAACCTAAAC----------------------------------------------------------------------------GTCCTCACAGACCTCTCTTTCTCCCACTAGAGGACAAGAGTGaagtggcagagccaggattcacac-agggcagtccagcagc--agtctacagccttaactactactctaGCATTCCAGGTAG------GTTCAGTAGCAACTGATGTGGCTGTGCTAGAGAAATGAGATAAGGAAGAAAGGGCATCTTTGGGCTGGGCAGGAGGAAGC-CCCAAC-TGCATTCATAGAATCCC-TTGAGCTCC-ACACTTGGATTTTCTGTTGGTCTAACT-
i aotNan1.NW_018511496v1   I 5 C 0
s micMur3.chr6               657800 302 + 123392446 agga----tgtgtatgtacatgtTGTT---AAGGACCTCCATCCTAAAC----------------------------------------------------------------------------ATCCCCACAAACCTCCCTTTCTCCCACTGGAGGacaacagtgaagtgtcacagccaggatttacac-aggacagtccagcagcagagtctacagccttaaccactatgctaGCATTCCAGGTGG------GTTCTGTAGCAACTGATGTGGTGGTACTACAGAAATGAGATAAGAAAGAAAAGGCATCTTTGGGCTGGGCAGGAGGAAGCCCCCAGC-TGCCTTCATAGAATCCC-TGGAGCTCC-ACACCAGGATTTTCTATTGGTCTA----
i micMur3.chr6             C 0 I 60
s proCoq1.NW_012149775v1     689328 302 -   1411461 AGTA----TGTGTGTGTACACGTTGTT---AAGAACCTCCATCCTAAAC----------------------------------------------------------------------------ATCCCCACAAACCTCCCTTTCTCCCACTGGAGGACAACAGAGaagtgtcacagccaggatttacac-agggcagcccaacagcagagtctacagccttaaccactaccctaGCATTCCAGGTGG------GCTCTGTAGCGACTGATGTGGTGGTACTAGAGAAATGAGATAAGGAAGAAAGGGCATCTTTGGGCTGGGCAGGGGGAAGCCCCCAGC-TGCCTTCACAGAATCCC-TGGAGCTCC-ACACTGGGATTTTCTATTGGTCTA----
i proCoq1.NW_012149775v1   C 0 I 60
s otoGar3.GL873550           708842 302 +  18854210 ATTA----TGTGTATATGGGCATTGTT---AAGGACCTTCAAGCTAAAT----------------------------------------------------------------------------GTCCCCACAAACCTCCCTTTCTCCCAGTGGAGGacaacagtgaagtggcagagccaggatttacac-agggcagtccagcagcagagtctacagccttaaccactaccctaGCATTCCAGGTGG------GCTCTGCAGCAACTGATGTGGCGGTACTAGAGAAATGAGATAAGAAAGAAAGGGCATCTTTGGGCTGGGAAGGGGGAAATCCCTAGT-TGCCTTCATAGACTCCC-TGGAGCTCC-ATACTGGGATTTTCTATTGGTCTA----
i otoGar3.GL873550         C 0 I 4
s canFam3.chr12              381052 346 +  72498081 agtg----catgtgtatacatgcTGTT---AAGAACTTACAACCTAAATGTCCCCACAagctctgtgcagtggcagtattatagccgatgaggtttatctgaagcatgattatcgctaactaaatgtccccacagacctctctgtCTCCCAATGGAGGACAGCAGTGAAGTGGTATAGCCAA-ATTAACACAAAGGTTGTCCAGTAGCTGAGCCCAGAGCCTTAACCACTGTCCTAGCATTCCAGGTCGGGTTGCGCTCTATAGTGACTATTGTGGTA-------------------------------------------GGGCAGGGAAGAGCCCCCAGC-TGCCTTCACAGAATCCCGTGGCACTCC-ACATTGGAACTTCCTATCGGTCTAGCTG
i canFam3.chr12            C 0 C 0
e mm10.chr17               59005124 403 -  94987271 I

a score=358485.000000
s hg38.chr6_GL000254v2_alt  1898382 42 +   4827813 TGATGAGCT-AAAGGACAGGACATGGCTGTT--TTGAAGAGAAGA---------
s panTro5.chr6             30744052 42 + 175400573 TGATGAGCT-AAAGGACAGGACATGGCTGTT--TTGAAGAGAAGA---------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31167680 42 + 173848474 TGATGAGCT-AAAGGACAGGACATGGCTGTT--TTGAAGAGAAGA---------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     674676 42 +   2037526 TGATGAGCT-AAAGGACAGGACATGGCTGTT--TTGAAGAGAAGA---------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75343281 42 + 122973662 TGATGGGCT-AAAGGACAGGACATGGCTGTT--TTGAAGAGGAGA---------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31254759 42 + 172585720 TGATGAGTT-AAAGGATAGGACATGAATGTT--TTGAAGAGGAGA---------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30543766 43 - 170955103 TGATGAGTTAAAAGGATAGGACATGAATGTT--TTGAAGAGGAGA---------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     840052 42 +   1495729 TGATGAGTT-AAAGGATAGGACATGGCTGTT--TTGAAGAGGAGA---------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      63184 42 -    811324 TGATGAGTT-AAAGGATAGGACATGGCTGTT--TTGAAGAGGAGA---------
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30093705 42 -  71996105 TGATGAGTT-AAAGGATAGGACATGGCTGTT--TTGAAGAGGAGA---------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     100495 42 +    779361 TGATGAGTT-AAAGGATAGGACATGGCTGTT--TTGAAGAGGAGA---------
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     763916 42 -   1829203 TGATGAGTT-AAAGGATAGGACATAGCTGTT--TTGAAGAGGAGA---------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30924529 40 + 171630274 TGGTGGGCT-AAAAGACAGGACATGG-TGTT--TTGAAGAG-AGA---------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            96131 40 -    750284 TTGTGGGCT-AAAAGACAGGACATGG-TGTT--TTGAAGAG-AGA---------
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1344095 40 -   1771730 TTGTGGGCT-AAAAGACAGGACATGG-TGTT--TTGAAGAG-AGA---------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      43120 38 -    566255 --GTGGGCT-AAAAGACAGGACACGG-TGTT--TTGAAGAC-AGA---------
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           709148 44 +  18854210 TGGTGGGCT-AGGAAACAAGACAGAGTTTTTCATCAAAGGCAATA---------
i otoGar3.GL873550         I 4 I 6
s canFam3.chr12              381398 50 +  72498081 TGGTGGAAT-GAAA-ATGAGATATACAGATT--TTTATCAAAGGAAGTAAAAGA
i canFam3.chr12            C 0 C 0
e micMur3.chr6               658102 60 + 123392446 I
e mm10.chr17               59005124 403 -  94987271 I
e proCoq1.NW_012149775v1     689630 60 -   1411461 I

a score=1074697.000000
s hg38.chr6_GL000254v2_alt  1898424 78 +   4827813 GTGAGCTGGCCAAGGGAGGAATGACAGGCT---ATA-----A--GA-GAAT-AAAAAACTGAGTTCCTAACTGCGGACATCAGCACTAGG
s panTro5.chr6             30744094 78 + 175400573 GTGAGCTGGCCAAGGGAGGAATGACAGGCT---ATA-----A--GA-GAAT-AAAAAACTGAGTTCCTAACTGCGGACATCAGCACTAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31167722 78 + 173848474 GTGAGCTGGCCAAGGGAGGAATGACAGGCT---ATA-----A--GA-GAAT-AAAAAACTGAGTTCCTAACTGCGGACATCAGCACTAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     674718 78 +   2037526 GTGAGCTGGCCAAGGGAGGAATGACAGGCT---ATA-----A--GA-GAAT-AAAAAACTGAGTTCCTAACTGCGGACATCAGCACTAGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75343323 74 + 122973662 GTGAGCTGGCCAAGGGAGGAATGACAGGCT---ACA-----A--GA-GAAT-AAAAAACTGAGCTCCTAACTGCAGACATCAGCAC----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31254801 80 + 172585720 GTGAGCTGGCCAAGGGAGGAGTGACAGGCT---ATA---AGA--GA-GAAT-AAAAAACTGAGTTCCTAACTGCAGACATCAGCACTAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30543809 80 - 170955103 GTGAGCCGGCCAAGGGAGAAGTGACAGGCT---ATA---AGA--GA-GAAT-AAAAAACTGAGTTCCTAACTGCAGACATCAGCACTAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     840094 80 +   1495729 GTGAGCTGGCCAAGGGAGGAGTGACAGGCT---ATA---AGA--GA-GAAT-AAAAAACTGAGTTCCTAACTGCAGACATCAGCACTAGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      63226 80 -    811324 GTGAGCTGGCCAAGGGAGGAGTGACAGGCT---ATA---AGA--GA-GAAT-AAAAAACTGAGTTCCTAACTGCAGACATCAGCACTAGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30093747 80 -  71996105 GTGAGCTGGCCAAGGGAGGAGTGACAGGCT---ATA---AGA--GA-GAAT-AAAAAACTGAGTTCCTAACTGCAGACATCAGCACTAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     100537 80 +    779361 GTGAGCTGGCCAAGGGAGGAGTGACAGGCT---ATA---AGA--GA-GAAT-AAAAAACTGAGTTCCTAACTGCACACATCAGCACTAGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     763958 79 -   1829203 GTGAGTTGGCCAAGGGAGGAGTGACAGGCC---AT----AGA--GA-GAAT-AAAAAACTGAGTTCCTAACTGCAGACATCAGCACTAGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30924569 75 + 171630274 GTGAACTGGCCAAAGGAGGAGTGACAGGCC---ATA---AGA--CA-GAAT-AAAAAACTGAGTTCCTA-----AGACATCAGCACTAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            96171 83 -    750284 GTGAACTAGCCAAAGGGGGAGTGACAGGCTATGATA---AGA--GA-GAAT-AAAAAACTGAGTTCCTAACTGCAGACATCAGCACTAGG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1344135 83 -   1771730 GTGAACTGGCCAAAGGAGGAGTGACAGGCGATGATA---AGA--GA-GAAT-AAAAAACTGAGTTCCTAACTGCAGACATCAGCACTAGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      43158 83 -    566255 GTGAACTGGCCAAAGGAGGAGTGACAGGCTATGATA---AGA--GA-GAAT-AAAAAACTGAGTTCCTAACTGCAGACATCAGCACTAGG
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               658162 84 + 123392446 GTCAGCTGGCAAGGGGAGGAGTGACAGGCT---ATAACAAGA--GATGAAT-AAAAAACTGAGTTCCTGACTGCAGACATCAGCACAGGG
i micMur3.chr6             I 60 C 0
s proCoq1.NW_012149775v1     689690 84 -   1411461 GTCAGCTGGCCAGGGGAGGAGTGACAGGCT---ATAACAAGA--GATGAAT-AAAAAACTGAGTTCCTGACTGCAGACATCAGCACAGAG
i proCoq1.NW_012149775v1   I 60 C 0
s otoGar3.GL873550           709198 85 +  18854210 GTCAGCTGACCAACAGAGGAGTGACAGGCT---ATAACAAGA--GATGAATAAAAAAACTAAATTTCTGAGTGCAGACATCAGCACAGAT
i otoGar3.GL873550         I 6 C 0
s canFam3.chr12              381448 83 +  72498081 GTCAGTTAACCAGAGCAGGAGTGACAAGCT---GTG---ACACTGATGAAT-AAAGGACTGAGTTCCTGATCACAGACGTCAGTATGAGA
i canFam3.chr12            C 0 C 0
e mm10.chr17               59005124 403 -  94987271 I

a score=13321837.000000
s hg38.chr6_GL000254v2_alt  1898502 856 +   4827813 TAGAGATTAGAAAGACAG---GAAGATAGATACCTCTCTGTCTCCCAACTCTTGCCTCTGACCTTTGCCCCTGAAAAACCTTTCTC------CCTCCTCCTTGCCCACCCTTATCCCTAGTACTCACTGGATGTCGGATATCAGTGATAAGCAGGACGATGTCAGACATCTCTAACACCCGCCACAGCTGCCTCCATGTCTAAAAAGACAGGATCA--GGAAGAGAAACTGAAAACAGAGTCCCTCTCCAGCCTGATCCCAAACCAATTTGACCA-TAGGTCACTATGCCCCACTCCTGTCCCTAGAGTACACTGTCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCAGAGGAGTAAGCCCCATGAATCTTCCCAAGATAGTCTTGGAAGCTCCGTTCCTCTTGGCTCATTAGTTGCTCCTTGGACATCTCATAGCTCCAAGGAGGACGTCGAGGAAAGTCCAGAACTGGGAATTCAGGAAAAAGTCC----AAGTGTGAGGAAATCTTCAGGATTCAAGAGT----ACATCCCAGACCCCTCCTTCCTCA---CAGTCGGCTTTT-ACCTTTCCAAACTCC-TTCCC-CAGCCCAATGCCT---------------GTCTTGCTCTCACTCACCTGAGCCAGGCTGATACACCTCCCGGATGTCCAGCTCCAACAACTCAGCACTGACCGGCTGTAGAACTTGCTCCCGGGCTGctctctttctcctctctacctcctccctgctgtctctctcAAAATGCAGTCGGTATCTAAGGGAACAGGGACCGAGACATCCAGAGCAATCCTGTGGCCACAAACTCCTATTTTCTCCCCTCTTGTACAATCAACTTCGCAAACCATTCTCTCCAGAGTCGTTCAAGTCTCCTCTCT
s panTro5.chr6             30744172 856 + 175400573 TAGAGATTAGAAAGACAG---GAAGATAGATACCTCTCTGTCTCCCAACTCTTGCCTCTGACCTTTGCCCCTGAAAAACCTTTCTC------CCTCCTCCTTGCCCACCCTTATCCCTAGTACTCACTGGATGTCGGATATCAGTGATAAGCAGGACGATGTCAGACATCTCTAACACCCGCCACAGCTGCCTCCATGTCTAAAAAGACAGGATCA--GGAAGAGAAACTGAAAACAGAGTCCCTCTCCAGCCTGATCCCAAACCAATTTGACCA-TAGGTCACTATGCCCCACTCCTGTCCCTAGAGTACACTGTCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCAGAGGAGTAAGCCCCATGAATCTTCCCAAGATAGTCTTGGAAGCTCCGTTCCTCTTGGCTCATTAGTTGCTCCTTGGACATCTCATAGCTCCAAGGAGGACGTCGAGGAAAGTCCAGAACTGGGAATTCAGGAAAAAGTCC----AAGTGTGAGGAAATCTTCAGGATTCAAGAGT----ACATCCCAGACCCCTCCTTCCTCA---CAGTCGACTCTT-ACCTTTCCAAACTCC-TTCCC-CAGCCCAATGCCT---------------GTCTTGCTCTCACTCACCTGAGCCAGGTTGATACACCTCCCGGATGTCCAGCTCCAACACCTCAGCACTGACCGGCTGTAGAACTTGCTCCCGGGCTGctctctttctcctctctacctcctccctgctgtctctctcAAAATGCAGTCGGTATCTAAGGGAAGAGGGACCGAGACATCCAGAGCAATCCTGTGGCCACAAACTCCTATTTTCTCCCCTCTTGTACAATCAACTTCGCAAACCATTCTCTCCAGAGTCGTTCAAGTCTCCTCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31167800 856 + 173848474 TAGAGATTAGAAAGACAG---GAAGATAGATACCTCTCTGTCTCCCAACTCTTGCCTCTGACCTTTGCCCCTGAAAAACCTTTCTC------CCTCCTCCTTGCCCACCCTTATCCCTAGTACTCACTGGATGTCGGATATCAGTGATAAGCAGGACGATGTCAGACATCTCTAACACCCGCCACAGCTGCCTCCATGTCTAAAAAAACAGGATCA--GGAAGAGAAACTGAAAACAGAGTCCCTCTCCAGCCTGATCCCAAACCAATTTGACCA-TAGGTCACTATGCCCCACTCCTGTCCCTAGAGTACACTGTCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCAGAGGGGTAAGCCCCATGAATCTTCCCAAGATAGTCTTGGAAGCTCCGTTCCTCTTGGCTCATTAGTTGCTCCTTGGACATCTCATAGCTCCAAGGAGGACGTCGAGGAAAGTCCAGAACTGGGAATTCAGGAAAAAGTCC----AAGTGTGAGGAAATCTTCAGGATTCAAGAGT----ACATCCCAGACCCCTCCTTCCTCA---CAGTCGGCTCTT-ACCTTTCCAAACTCC-TTCCC-CAGCCCAATGCCT---------------GTCTTGCTCTCACTCACCTGAGCCAGGTTGATACACCTCCCGGATGTCCAGCTCCAACACCTCAGCACTGACCGGCTGTAGAACTTGCTCCCGGGCTGctctctttctcctctctacctcctccctgctgtctctctcAAAATGCAGTCGGTATCTAAGGGAACAGGGACCGAGACATCCAGAGCAATCCTGTGGCCACAAACTCCTATTTTCTCCCCTCTTGTACAATCAACTTCGCAAACCATTCTCTCCAGAGTCGTTCAAGTCTCCTCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     674796 856 +   2037526 TAGAGATTAGAAAGACAG---GAAGATAGATACCTCTCTGTCTCCCAACTCTTGCCTCTGACCTTTGCCCCTGAAAAACCTTTCTC------CCTCCTCCTTGCCCACCCTTATCCCTAGTACTCACTGGATGTCGGATATCAGTGATAAGCAGGACGATGTCAGACATCTCTAACACCCGCCACAGCTGCCTCCATGTCTAAAAAGACAGGATCA--GGAAGAGAAACTGAAAACAGAGTCCCTCTCCAGCCTGATCCCAAACCAATTTGACCA-TAGGTCACTATGCCCCACTCCTGTCCCTAGAGTACACTGTCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCAGAGGAGTAAGCCCCATGAATCTTCCCAAGATAGTCTTGGAAGCTCCGTTCCTCTTGGCTCATTAGTTGCTCCTTGGACATCTCATAGCTCCAAGGAGGACGTCGAGGAAAGTCCAGAACTGGGAATTCAGGAAAAAGTCC----AAGTGTGAGGAAATCTTCAGGATTCAAGAGT----ATATCCCAGACCCCTCCTTCCTCA---CAGTCGGCTCTT-ACCTTTCCAAACTCC-TTCCT-CAGCCCAATGCCT---------------GTCTTGCTCTCACTCACCTGAGCCAGGCTGATAGACCTCCCGGATGTCCAGCTCCAACACCTCAGCACTGACCAGCTGTAGAACTTGCTCCCGGGCTGctctctttctcctctctacctcctccctgctgtctctctcAAAATGCAGTCGGTATCTAAGGGAACAGGGACCGAGACATCCAGAGCAATCCTGTGGCCACAAACTCCTATTTTCTCCCCTCTTGTACAATCAACTTCGCAAACCATTCTCTCCAGAGTCGTTCAAGTCTCCTCTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75343397 856 + 122973662 TAGAGATTAGAAAGACAG---GAAGATAGATATCTCTCTGTCTCCCAACTCTTACCTCTGACCTTTGCCCCTGAAAAACCGTTCTC------CCTCCTCCTTGCCCACCCTTATCCCCAGTACTCACTGGATGTCGGATATCAGTGATAAGCAGGACGATGTCAGACATCTCTAACACCCGCCACAGCTGCCTCCATGTCTAAAAAGACAGGATCA--GGAAGAGAACCTGAAAACAGAGTCCCTCTGCAGCCTGATCCCAAACCAATTTGACCA-TAAGTCACTATGCCCCACTCCTGTCCCTACAGTACACTGTCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCAGAGGAGTAAGCCCCATGAATCTTCCCAAGATACTCTTGGAAGCTCCGTTCCTCTTGGCTCATTAGTTGCTCCTTGGACATCTCATAGCTCCAAGGAGGACGTCGAGGAAAGTCCAGAACTGGGAAATCAGGAAAAAGTCC----AAGTGTGAGGAAATTTTCAGGATTCAAGAGT----ACATCCCAGACCCCTCCTTCCTCA---CAGTCGGCTCTT-ACCTTTCCAAACTCC-TTCCC-CAACCCAATGCCT---------------GTCTTGCTGTCACTCACCTGAGCCAGGCTGATAGACCTCCCGGATGTCCAGCTCCAACACCTCAGCACTGACCGGCTGTAGAACTTGCTCCCGGGCTGctctctttctcctctctacctcctccctgctgtctctctcAAAATGCAGTCGGTATCTAAGGGAACAGGGACCGAGACATCCAGTGCAATCCTGTGGCCACAAACTCATATTTTCTCCCCTCTTGTACAATCAACTTCGCAAAGCATTCTCTCCAGAGTCGTTCAAGTCTCCTCTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31254881 852 + 172585720 TAGAGGTCAGAAAGACAA---GAAAATAGATAC----CTGTCTCCCAACTCTTGCCTCTGACCTTTGCCCCTGAAAAACCTTTCTCC---CTCCTCCTCCTTGGCCACCCTTATTCCTAGTACTCACTGGATGTCGGATATCAGTGATAAGCAGGACAATGTCAGACATCTCTAACACACGCCACAGCTGCCTCCATGTCTAAAAAGACAAGATCA--GGAAGAGAACCTGAACACAGAGTCCCTCTCAAGCCTGATCCCAAGCCAATTTGACCA-TTGGTCACTATGCCCCACTCCTGTCCCTAGAGTACACTGTCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCAGAGGAGTAAGCCCCATGAATCTTCCCAAGATACTCTTGGAAGCTCCGTTCCTCTTGGCTCATTAGTTGCTCCTTGGACATCTCATAGCTCCAAGGAGGACGTCGAGGAAAGTCCAGAACTGGGAAATCAGGAAAAAGTCC----AAGTGTGAGGGAATTTTTAGGATTGAAGAGT----ACATCCCAGACCCCTCCATCCTCA---CACTAGGCTCTT-ACCTTTCCAAACTCCTTTCCC-CAGCCCAATACTT---------------GTCTTGCTCTCACTCACCTGAGCCAGGCTGATAGACCTCCCGGATGTCCAGCTCCAACACCTCAGCACTGACCGGCTGTAGAACTTGCTCCCGGGCTGctctctttctcctctctacctcctctctgctgtctctctcAAAATGCAGTCGGTATCTAAGGGAACAGGGACCAAGACATCCAGCGCAATCCTGTGGCCACAAACTCCTATTTTCTCCCCTCTTGGACAATCAACTTCGCAAAGCATTCTCTC----GTCGTTCAAGTCTCCTCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30543889 852 - 170955103 CAGAGGTCAGAAAGACAG---GAAAATAGATAC----CTGTCTCCCAACTCTTGCCTCTGACCTTTGCCCCTGAAAAACCTTTCTCC---CTCCTCCTCCTTGGCCACCCTTATTCCTAGTACTCACTGGATGTCGGATATCAGTGATAAGCAGGACAATGTCAGACATCTCTAACACACGCCACAGCTGCCTCCATGTCTAAAAAGACAAGATCA--GGAAGAGAACCTGAACACAGAGTCCCTCTCAAGCCTGATCCCAAGCCAATTTGACCA-TTGGTCACTATGCCCCACTCCTGTCCCTAGAGTACACTGTCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCAGAGGAGTAAGCCCCATGAATCTTCCCAAGATACTCTTGGAAGCTCCGTTCCTCTTGGCTCATTAGTTGCTCCTTGGACATCTCATAGCTCCAAGGAGGACGTCGAGGAAAGTCCAGAACTGGGAAATCAGGAAAAAGTCC----AAGTGTGAGGGAATTTTCAGGATTCAAGAGT----ACATCCCAGACCCCTCCATCCTCA---CACTAGGCTCTT-ACCTTTCCAAACTCCTTTCCC-CAGCCCAATACTT---------------GTCTTGCCCTCACTCACCTGAGCCAGGCTGATAGACCTCCCGGATGTCCAGCTCCAACACCTCAGCACTGACCGGCTGTAGAACTTGCTCCCGGGCTGctctctttctcctctctacctcctctctgctgtctctctcAAAATGCAGTCGGTATCTAAGGGAACAGGGACCAAGACATCCAGCGCAATCCTGTGGCCACAAACTCCTATTTTCTCCCCTCTTGGACAATCAACTTCGCAAAGCATTCTCTC----GTCGTTCAAGTCTCCTCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     840174 851 +   1495729 TAGAGGTCAGAAAGACAA---GAAAATAGATAC----CTGTCTCCCAACTCTTGCCTCTGACCTTTGCCCCTGAAAAACCTTTCTCC---CTCCTCCTCCTTGGCCACCCTTATTCCTAGTACTCACTGGATGTCGGATATCAGTGATAAGCAGGACGATGTCAGACATCTCTAACACACGCCACAGCTGCCTCCATGTCTAAAAAGACAAGATCA--GGAAGAGAACCTGAACACAGAGTCCCTCTCAAGCCTGATCCCAAGCCAATTTGACCA-TTGGTCACTATGCCCCACTCCTGTCCCTAGAGTACACTGTCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCAGAGGAGTAAGCCCCATGAATCTTCCCAAGATACTCTTGGAAGCTCCGTTCCTCTTGGCTCATTAGTTGCTCCTTGGACATCTCATAGCTCCAAGGAGGACGTCGAGGAAAGTCCAGAACTGGGAAATCAGGAAAAAGTCC----AAGTGTGAGGGAATTTTTAGGATTGAAGAGT----ACATCCCAGACCCCTCCATCCTCA---CACTAGGCTCTT-ACCTTTCCAAACTCC-TTCCC-CAGCCCAATACTT---------------GTCTTGCTCTCACTCACCTGAGCCAGGCTGATAGACCTCCCGGATGTCCAGCTCCAACACCTCAGCACTGACCGGCTGTAGAACTTGCTCCCGGGCTGctctctttctcctctctacctcctctctgctgtctctctcAAAATGCAGTCGGTATCTAAGGGAACAGGGACCGAGACATCCAGCGCAATCCTGTGGCCACAAACTCCTATTTTCTCCCCTCTTGGACAATCAACTTCGCAAAGCATTCTCTC----GTCGTTCAAGTCTCCTCTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      63306 855 -    811324 CAGAGGTCAGAAAGACAG---GAAAATAGATACCTCTCTGTCTCCCAACTCTTGCCTCTGACCTTTGCCCCTGAAAAACCTTTCTCC---CTCCTCCTCCTTGCCCAACCTTATTCCTAGTACTCACTGGATGTCGGATATCAGTGATAAGCAGGACGATGTCAGACATCTCTAACACCCGCCACAGCTGCCTCCATGTCTAAAAAGACAAGATCA--GGAAGAGAACCTGAACACAGAGTCCCTCTCAAGCCTGATCCCAAGCCAATTTGACCA-TTGGTCACTATGCCCCACTCCTGTCCCTAGAGTACACTGTCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCAGAGGAGTAAGCCCCATGAATCTTCCCAAGATACTCTTGGAAGCTCCGTTCCTCCTGGCTCATTAGTTGCTCCTTGGACATCTCATAGCTCCAAGGAGGACGTCGAGGAAAGTCCAGAACTGGGAAAGCAGGAAAAAGTCC----AAGTGTGAGGCAATTTTCAGGATTCAAGAGT----ACATCCCAGACCCCTCCATCCTCA---CACTAGGCTCTT-ACCTTTCCAAACTCC-TTCCC-CAGCCCAATACTT---------------GTCTTGCCCTCACTCACCTGAGCCAGGCTGATAGACCTCCCGGATGTCCAGCTCCAACACCTCAGCACTGACCGGCTGTAGAACTTGCTCCCGGGCTGctctctttctcctctctacctcctctctgctgtctctctcAAAATGCAGTCGGTATCTAAGGGAACAGGGACCGAGACATCCAGCGCAATCCTGTGGCCACAAACTCCTATTTTCTCCCCTCTTGGACAATCAACTTCGCAAAGCATTCTCTC----GTCGTTCAAGTCTCCTCTCT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30093827 855 -  71996105 TAGAGGTCAGAAAGACAG---GAAAATAGATACCTCTCTGTCTCCCAACTCTTGCCTCTGACCTTTGCCCCTGAAAAACCTTTCTCC---CTCCTCCTCCTTGCCCACCCTTATTCCTAGTACTCACTGGATGTCGGATATCAGTGATAAGCAGGACGATGTCTGACATCTCTAACACCCGCCACAGCTGCCTCCATGTCTAAAAAGACAAGATCA--GGAAGAGAACCTGAACACAGAGTCCCTCTCAAGCCTGATCCCAAGCCAATTTGACCA-CTGGTCACTATGCCCCACTCCTGTCCCTAGAGTACACTGTCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCAGAGGAGTAAGCCCCATGAATCTTCCCAAGATACTCTTGGAAGCTCCGTTCCTCTTGGCTCATTAGTTGCTCCTTGGACATCTCATAGCTCCAAGGAGGACGTCGAGGAAAGTCCAGAACTGGGAAATCAGGAAAAAGTCC----AAGTGTGAGGGAATTTTCAGGATTCAAGAGT----ACATCCCAGACCCCTCCATCCTCA---CGCTAGGCTCTT-ACCTTTCCAAACTCC-TTCCC-CAGCCCAATACTT---------------GTCTTGCTCTCACTCACCTGAGCCAGGCTGATAGACCTCCTGGATGTCCAGCTCCAACACCTCAGCACTGACCGGCTGTAGAACTTGCTCCCGGGCTGctctctttctcctctctacctcctctctgctgtctctctcAAAATGCAGTCGGTATCTAAGGGAACAGGGACCGAGACATCCAGCGCAATCCTGTGGCCACAAACTCCTATTTTCTCCCCTCTTGGACAATCAACTTCGCAAAGCATTCTCTC----GTCGTTCAAGTCTCCTCTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     100617 855 +    779361 CAGAGGTCAGAAAGACAG---GAAAATAGATACCTCTCTGTCTCCCAACTCTTGCCTCTGACCTTTGCCCCTGAAAAACCTTTCTCC---CTCCTCCTCCTTGCCCAACCTTATTCCTAGTACTCACTGGATGTCGGATATCAGTGATAAGCAGGACGATGTCAGACATCTCTAACACCCGCCACAGCTGCCTCCATGTCTAAAAAGACAAGATCA--GGAAGAGAACCTGAACACAGAGTCCCTCTCAAGCCTGATCCCAAGCCAATTTGACCA-CTGGTCACTATGCCCCACTCCTGTCCCTAGAGTACACTGTCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCAGAGGAGTAAGCCCCATGAATCTTCCCAAGATACTCTTGGAAGCTCCGTTCCTCCTGGCTCATTAGTTGCTCCTTGGACATCTCATAGCTCCAAGGAGGACGTCGAGGAAAGTCCAGAACTGGGAAATCAGGAAAAAGTCC----AAGTGTGAGGGAATTTTCAGGATTCAAGAGT----ACATCCCAGACCCCTCCATCCTCA---CACTAGGCTCTT-ACCTTTCCAAACTCC-TTCCC-CAGCCCAATACTT---------------GTCTTGCCCTCACTCACCTGAGCCAGGCTGATAGACCTCCCGGATGTCCAGCTCCAACACCTCAGCACTGACCGGCTGTAGAACTTGCTCCCGGGCTGctctctttctcctctctacctcctctctgctgtctctctcAAAATGCAGTCGGTATCTAAGGGAACAGGGACCGAGACATCCAGCGCAATCCTGTGGCCACAAACTCCTATTTTCTCCCCTCTTGGACAATCAACTTCGCAAAGCATTCTCTC----GTCGTTCAAGTCTCCTCTCT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     764037 855 -   1829203 CAGAGGTCAGAAAGACAG---GAAGATAGATACCTCTCTGTCTCCCAACTCTTGCCTCTGACCTTTGCCCCTGAAAAACCTTTCTCC---CTCCTCCTCCTTGCCCACCCTTATTCCTCGTACTCACTGGATGTCGGATATCAGTGATAAGCAGGACGATGTCAGACATCTCTAACACCCGCCACAGCTGCCTCCATGTCTAAAAAGATAAGATCA--GGATGAGAACCTGAACACAGAGTCCCTCTCAAGCCTGATCCCAAGCCAATTTGACCA-TTGGTCACTATGCCCCACTCCTGTCCCTAGAGTACACTGTCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCAGAGGAGTAAGCCCCATGAATCTTCCCAAGATACTCTTGGAAGCTCCGTTCCTCTTGGCTCATTAGTTGCTCCTTGGACATCTCATAGCTCCAAGGAGGACGTCGAGGAAAGTCCAGTACTGGGAAATCAGGAAAAAGTCC----AAGTGTGAGGGAATTTTCAGGATTCAAGAGT----ACATCCCAGATGCCTCCATCCTCA---CACTCGGCTCTT-ACCTTTCCAAACTCC-TTCCC-CAGCCCAATACTT---------------GTCTTGCTCTCACTCACCTGAGCCAGGCTGATAGACCTCCCGGATGTCCAGCTCCAACACCTCAGCACTGACCGGCTGTAGAACTTGCTCCCGGGCTGctctctttctcctctctacctcctctctgctgtctctctcAAAATGCAGTCGGTATCTAAGGGAACAGGGACCGAGACATTCAGCGCAATCCTGTGGCCACAAACTCCTATTTTCTCCCCTCTTGGACAATCAACTTCGCAAAGCATTCTCTC----GTCGTTCAAGTCTCCTCTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30924644 849 + 171630274 TAAAGGTTAGAAAGACAG---GAAGATGGATAC----CTGTCTCCCAACTCTTGCCTCTGACCTGTGCTCCCCAAAACCTTTTCTCC---CTCCTCCCCCTTGCCCACCCTTATTGCTAGTACTCACTGGATGTCGGATATCAGTGATAAGCAGGACAATGTCAGACATCTCTAACACCCGCCACAGCTGCCTCCATGTCTAAGAAGACAAGATCC--AGAAGAGAACCTCAACACAGAGTCTCTCTCC-GCCTGACCCCAAACCAATTTGACCA-TGGGTCACTATGCCCCACTCTTGTCCCTA---CTCTGAGTCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCAGAGGAGTAAGCCCCATGAATCTTCCCAAGATACTCTTGGAAGCTCCGTTCCTCTTGGCTCATTAGTTGCTCCTTGGACATCTCATAGCTCCAAGGAGGACGTCGAGGAAAGTCCAGAACTGGGAAATCAGGAAGAAGTCC----AAGTGTGAGGAAATTTTCAGTATTCAAGAGT----ACATCCCAGACCCCTCCTTCCTCA---CAGTCGGCTCTT-ACCTTTCCAAACTCC-TTCC--CAGCCC-ATGCCT---------------GTCTTGCTCTCACTCACCTGAGCCAGGCTGATAGACCTCTCGGATGTCCAGCTCCAACACTTCAGCACTGACCGGCTGTAAAACTTGCTCACGGGCTGCTCTCTTTCTCCTCTCTACCTCCTCCCTGCTGTCTCTTTCAAAATGCAGTCGGTATCTAAGGGAACAGGGACCGAGATATCCAGCGCAATCCTGTGGCCACAAACTCCCATTTTCTCCCCTCTTGGACAATCAACTTCGCAAAGCATTCTCTCCAGAGTTGTTGAAGCCTCCTGTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            96254 849 -    750284 TAGAGGTTGGAAAGACAG---GAAGATGGATAC----CTGTCTTCCAACTCTTGCCTCTGACCTTTTCTCCCCAAAACCCTTTCTCT---CTCCTCCCCCTTGCCCGCCCTTATCACTAGTACTCACTGGATGTCGGATATCAGTGATAAGCAGGACAATGTCAGACATCTCTAACACCCGCCACAGCTGCCTCCATGTCTAAGAAAACAAGATCC--AGAAGAGAACCTCAACACAGAGTCTCTCTCT-GCCTGACCCCAAACCAATTTGACCA-TGGGTCACTATGCCCCACTCCTGTCCCTA---CTCTGAGTCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCAGAGGAGTAAGCCCCATGAATCTTCCCAAGATACTCTTGGAAGCTCCGTTCCTCTTGGCTCATTAGTTGCTCCTTGGACATCTCATAGCTCCAAGGAGGACGTCGAGGAAAGTCCAGAACTGGGAAATCAGGAAGAAGTCC----AAGTGTGAGGAAATTTTCAGTATTCAACAGT----ACATCCCAGACCCCTCCTTCCTCA---CAGTCGGCTCTT-ACCTTTCCAAACTCC-TTCC--CAGCCC-ATGCCT---------------GTCTTGCTCTCACTCACCTGAGCCAGGCTGATAGACCTCCCGGATGTCCAGCTCCAACACTTCAGCACTGACCGGCTGCAAAACTTGCTCACGGGCTGCTCTCTTTCTCCTTTCTACCTCCTCCCTGCTGTCTCTTTCAAAATGCAGTCGGTATCTAAGGGAACAGGGACCGAGACATCCAGCGCAATCCTGTGGTCACAAACTCCCATTTTCTCCCCTCTTGGACAATCAACTTCGCAAAGCATTCTCTCCAGAGTTGTTGAAGCCTCCTGTCT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1344218 848 -   1771730 TAGAGGTTAGAAAGACAG---GAAGATGGATAC----CTGTCTTTCAACTCTTGCCTCTGACCTTTTCTCCCCAAAACCCTTTCTCC---CTCCTCCCCCATGCCCGCCCTTATCGCT-GTACTCACTGGATGTCGGATATCAGTGATAAGCAGGACAATGTCAGACATCTCTAACACCCGCCACAGCTGCCTCCATGTCTAAGAAAACAAGATCC--AGAAGAGAACCTCAACACAGAGTCTCTCTCT-GCCTGACCCCAAACCAATTTGACCA-TGGGTCACTATGGCCCACTCCTGTCCCTA---CTCTAAGTCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCAGAGGAGTAAGCCCCATGAATCTTCCCAAGATACTCTTGGAAGCTCCGTTCCTCTTGGCTCATTAGTTGCTCCTTGGACATCTCATAACTCCAAGGAGGACGTCGAGGAAAGTCCAGAACTGGGAAATCAGGAAGAAGTCC----AAGTGTGAGGAAATTTTCAGTATTCAAGAGT----ACATCCCAGACCCCTCCTTCCTCA---CAGTCGGCTCTT-ACCTTTCCAAACTCC-TTCC--CAGCCC-ATGCCT---------------GTCTTGCTCTCACTCACCTGAGCCAGGCTGATAGACCTCCCGGATGTCCAGCTCCAACACTTCAGCGCTGACCGGCTGTAAAACTTGCTCACGGGCTGCTCTCTTTCTCCTTTCTACCTCCTCCCTGCTGTCTCTTTCAAAATGCAGTCGGTATCTAAGGGAACAGGGACCGAAACATCCAGCGCAATCCTGTGGCCACAAACTCCCATTTTCTCCCCTCTTGGACAATCAACTTCGCCAAGCATTCTCTCCAGAGTTGTTGAAGCCTCCTGTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      43241 849 -    566255 TAGAGGTTAGAAAGACAG---GAAGATGGATAC----CTGTCTCCCAACTCTTGCCTCTGACCTTTGCTCCCCAAAACCCTTTCTCC---CTCCTCCCCTTTGCCCGCCCTTATCGCTAGTACTCACTGGATGTCGGATATCAGTGATAAGCAGGACAATGTCAGACATCTCTAACACCCGCCACAGCTGCCTCCACGTCTAAGAAGACAAGATCC--ATAAGAGAACCTCAACACAGAGTCTCTCTCC-GCCTGACCCCAAACCAATTTGACCA-TGGGTCACTATGCCCCACTCCTGTCCCTA---CTCGGAGTCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCAGAGGAGTAAGCCCCATGAATCTTCCCAAGATACTCTTGGAAGCTCCGTTCCTCTTGGCTCATTAGTTGCTCCTTGGACATCTCATAGCTCCAAGGAGGACGTCGAGGAAAGTCCAGAACTGGGAAATCAGGAAGAAGTCC----AAGTGTGAGGAAATTTTCAGTATTCAAGAGT----ACATCTCAAACCCCTCCTTCCTCA---CAGTCGGCTCTT-ACCTTTCCAAACTCC-TTCC--CAGCCC-ATGCCT---------------GTCTTGCTCTCACTCACCTGAGCCAGGCTGATAGACCTCCCGGATGTCCAGCTCCAACACTTCAGCACTGACCGGCTGTAAAACTTGCTCACGGGCTGCTCTCTTTCTCCTCTCTACCTCCTCCCTGCTGTCTCTTTCAAAATGCAGTCGGTATCTAAGGGAACAGGGACCGAGACATCCAGCGCAATCCTGTGGCCACAAACTCCCATTTTCTCCCCTCTTGGACAATCAACTTCGCAAAGCATTCTCTCCAGAGTTGTTGAAGCCTCCTGTCT
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               658246 864 + 123392446 TAGAGGTTGGAAAGAAAGAAAGGAGGAGGGTACCTCTCTGTCTCCAAACTCTTGCCTCTGACCTTTACCCCACAAGAACCTTCCTCC---CTCCTCCCTCTTTACCACCCCCATCCCCACGACTCACTGGATGTCGGATGTCAGTGATAAGCAGAACAATGTCAGACATCTCTAACACTCGCCACAGCTGCCTCCAAGTCTGAAAAGACAAGATCAGTGGATGAGAACCTGAACCCAGAGTCCCTCTGCAGCCTAACCCCAGACCAATTTGACCA-TGGGTCACTATGCCATATTCTTGTGCCCAC--TCCA--GTCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCAGAGGTGTAAGCCCCATGAATCTTCCCAAGATATTCCTGGAAGCTTCGTTCCTCTTGGCTCATTAGCTGCTCCTTGGACATCTCATAGCTCCAAGGAGGACGTCGGGGAAAGTCCAGGACTGGGAAGTCAAGAAAAAGCCCAAGTAAGTGTGAAGATACTGCCAGGATTCAAGTGT----ACATCCCAGA-CCCTCCCTCCTCACAGCAGTCAGCTCTT-CCCTTTCACACTCAT-TCCCC-CAGCCCAGTGCCT---------------GTCTTG--CTCTCTCACCTGAGCCAGGCTGATAGACCTCCCGGATGTCCAGCTCCAGCACCTCAGCACCGACCGGCTGTAACACTTGCTCCCGAGCTGCTCTCTTTCTCCTCTCCACCTCCTCCCGGCTGTCGCGTTCAAAATGCAGCCGGTATCTAAGAGAACAGGGACCATGAAATCCAGCAGGATCCTGCGGCCACAAACTCCTGTTTTCTCCCCTCATGGGCAGACAGTGTTGCAAAGCTCTCTCTTCAGAGTTGTTCATGTCTCCTCTCT
i micMur3.chr6             C 0 I 17
s proCoq1.NW_012149775v1     689774 863 -   1411461 TAGAGGTTGGAAAGAATGCAAGAAGGAGGATATCTCTCTGTCTCCCAGCTCTTGCCTCTGACCTTTACCCCACAAGAACCTTCCTCC---CTCCTCCCCCTTTACCACCCTCATCCCCAGGACTCACTGGATGCCGGATGTCAGTGATAAGCAGGACAATGTCAGACATCTCTAACACTCGCCACAGCTGCCTCCACGTCTGAAAAGACAAGATCAGTGGATGAGAACCTGAGCCCAGAGTCCCTCTCCAGCCTGACCCCAGACCAATTTGACCG-TGGGTCACTATGTCACACTCTTGTGCCCAC--TCCACTGTCACCTCCAGATTGTGCTCAAAGTAGCTCAGTTTCTCAGAGGTGTAAGCCCCATGAATCTTCCCAAGATACTCCTGGAAGCTTCGTTCCTCCTGGCTCATTAGTTGCTCCTTGGACATCTCATAGCTCCAAGGAGGACGTCGGGGAAAGTCCAGGACTGCGAAGTCAAGAAAAAGCCCAAGTAAGTGTGAAGACACTTCCAGGATCCAAGTGT----ACATCCCAGACCCCTCCTTCCTCACAGCAGTCAGCTCTT-ACCTTTCACACTCAC-TCCCC-CAGCCCAGTGCCT---------------GTCTT---CTGCCTCACCTGAGCCAGGCTGATAGACCTCCCGGATGTCCAGCTCCAGCACCTCAGCGCTGACCGGCTGTAACACTTGCTCCCGAGCTGCTCTCTTTCTCCTCTCCACCTCCTCCCGGCTGTCCCGTTCAAAATGCAGCCGGTATCTAAGGGAACAGGGACCATGAAATCCAGCACAATCCTGTGGCCACAAACTC--ATTTTCTCCCCT-GTGGGCAGACAACGTTGCAAAGCTCTCTCTCCAGAGTTGTTCACGTTTCCTCTCT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           709283 862 +  18854210 TAGAAGATGGAAAGAAAG---GAAGGAGGATACCTCTCTGTTTCCCAACTCTTGCCTCTGACCTTTACCCCACAAGAACCTTCCCCCCAACTCCTCCTCCTTGCCCACCCTCATCCCCAGGACTCACTGGATGTCGGATATCTGTGATAAGCAGGACAATGTCGGACATCTCTAACACTCGCCACAGCTGCCTCCATGTCTGAAAAGACAAGATCAATGAAAGAGAACCTGAGCCCAGAGTCCCACTCCAGCCTGACTCCAGACCAATTTGACCA-TGGGTCACT-TGCCCTACTTTGGCACCCAC--TCTACAGTCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCAGAGGTGTAAGCCCCATGAATCTTCCCAAGATACTCCTGGAAGCTTCGTTCCTCCTGGCTCATTAGTTGCTCCTTGGACATCTCATAGCTCCAAGGAGGACGTCGGGGAAAGTCCAGGACTAGGAAATCAAG---AAGTCC----AAGTGTGAGGATGGTTTCAGGATTCAAGTTT----ACATTCCAGATCCCTCCTTCCTCAGAACAATCAGCTCTTAATCTTTCACATGCAT-TCCCC-CAGCCCCATACCT---------------GTCTTGCTCTTCCTCACCTGAGCCAGGCTGATAGACCTCCGGGATGTCTAGCTCCAGCACCTCAGCACTGACAGGCTGTAACACTTGTTCCCGCGCTGCTCTCTTTCTCCTCTCCACCTCCTCCCGACTGTCCCGTTCAAAATGCAGCCGGTATCTAAGGGAACAGGGACCATGAAATCCAGAGCAATCCTGTGGCCACAAACTCCCATTTTCTCCCTTTATGGGCAGGCAGCTTTCCAAAGCTTTCTCTCCGGAGTTATTCATGTCTCCTGTCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59005527 789 -  94987271 tgaaaGCCAACCAAACAA---ACAAACAAAGATCTCTCTGCCTTCCAATTCCTGCCTCAGAACACTCTCATACTAGAATCATCCCCT------TTCCCCCTTGCAAACCTTT---CAAAGTCCTCACCGGATGTCGGATGTCAGTAATGAGCAGGACGATGTCAGACATCTCTAACACCCGCCACAGCTGCCTCCATGTCTGAAAA-----GATCA---GAAGAGAGACTGTCTTC--AGTTTGGCTGCTGCCTGAACCAGGAC-------ACTA--AGATCACAGTATGTCGACTCAGTAAACAC--GCCACCATCACCTCCAGATTGTGCTCAAAGTAGCTGAGTTTCTCTGAAGTGTATGCCCCGTGTATCTTCCCAAGGTATTCCTGGAAGCTCCGCTCCTCCTGGCTCATTAGCTGTTCCTTGGACATCTCATAACTCCAAGGAGGCCGCCGGGGAAAGTCCAGGACTGGGAAACAAGGAAAGAGACCGGATAAGCATGAGGACTTTTTCTG-----------------------GACCCCTTCTCTGGC----CAGCAAGTTCCC--------CAGGCTGA-TGGC---------ATACAC---------------AAGTAGCCCCCACTCACCTGAGCCAGGCTGATACACTTCCCGGATATCCAACTCTAACACTTCAGCACTGACCGGCTGCAACACTTGCTCTCTGGCCGCTCTCTTTCTCCTCTCCACCTCCTCCCGGCTGTCCCGTTCAAAATGCAGCCGGTATCTAAGGGGAAAGGGACC-ACACATCTAGTGGAGTCCTGTGACAAACAA---------TCTCCTCTTCTGACCACAAAACT--GCAAAGGTTCCTCTCCTG-GTTGTTCAAGTCTCCTCT--
i mm10.chr17               I 403 C 0
s canFam3.chr12              381531 855 +  72498081 TAGGTATGACTAAAAAGG---AAAA----ACACCTTTCCATCTCTCAACTTCTGCCTCTGGCCTTTACCCCAGAAGAATCTTCCTCC---TCCATACCCCTTG-TCACCCTCATCCCCAGTACTCACTGGATGTCGGATATCAGTGATAAGCAAGACAATGTCAGACATCTCCAACACGCGCCACAACTGCCTCCACGTCTGAAAAGACAAGTTCAGTGGAAGAGTACCGAAGACCCAAATCCGTCTCCTGCCTGATCCCAGAACAATTTGACCAAGGGGTTGCTATGCCCCACTCCTGGCCCCAC--TCCATTCTCACCTCCAGATTATGTTCAAAGTAGCTGAGTTTCTCAGAGGAGTAAGCTCCATGAATCTTCCCAAGATACTCCTGGAAGCTCCGTTCCTCCTGGCTCATTAGCTGCTCTTTGGACATCTCATAGCTCCAAGGAGGACGACGGGGAAAGTCCAGGACTGGAAGGTTAAGAAAAAGCCCGAGTAAGTCTGAGAATGGTTTCAGGGCTCAACAGTGGCGGCA-CCCAGATCTCTCATTGGTCA---CA----GCTCAT-------CCCAGCTCC-TTCCCGGAGCACACTGCCTCTCCCAAATATCCAGGTGTTGAGCT--CTTACCTGAGCCAAGCTGATAGACCTCTCGGATATCCAGTTCCAGCAGCTCAGCACTGACAGGCTGTAGCACTTGCTCTCGGGCTGCTCTCTTCCTCCTTTCCACCTCCTCCCGGCTGTCTCGCTCGAAATGCAGCCGGTATCTAATGGGACAGGGACCGCAGCATCTCTTGCAATCCCGTGCCCATAAA-----------GCCCCCTCCGGGCAGACATCTTCGCAGAGCTTTCTCTCCAGAGTTGTTCAAGTCACCTTTCT
i canFam3.chr12            C 0 C 0

a score=224730.000000
s hg38.chr6_GL000254v2_alt  1899358 19 +   4827813 CAAGTC-AGACTT-CCCCCAA
s panTro5.chr6             30745028 19 + 175400573 CAAGTC-AGACTT-CCCCCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31168656 19 + 173848474 CAAGTC-AGACTT-CCCCCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     675652 19 +   2037526 CAAGTC-AGACTT-CCCCCAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75344253 19 + 122973662 CAAGTC-AGACTT-CCCCCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31255733 19 + 172585720 CAAGTC-AGCCTT-CCCCCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30544741 19 - 170955103 CAAGTC-AGCCTT-CCCCCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     841025 19 +   1495729 CAAATC-AGCCTT-CCCCCAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      64161 19 -    811324 CAAGTC-AGCCTT-CCCCCAA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30094682 19 -  71996105 CAAGTC-AGCCTT-CCCCCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     101472 19 +    779361 CAAGTC-AGCCTT-CCCCCAA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     764892 20 -   1829203 CAAGTC-AGCCTTCCCCCCAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30925493 19 + 171630274 CAAGTC-AGCCTT-CCCCCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            97103 19 -    750284 CAAGTC-AGCCTT-CCCCTAA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1345066 19 -   1771730 CAAGTC-AGCCTT-CCCCCAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      44090 19 -    566255 CAAGTC-AGCCTT-CCCCCAA
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     690637 17 -   1411461 -CAGTC-AGCCTA-ACCCTA-
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           710145 18 +  18854210 -TAGTC-AGCTTT-CCCCCCA
i otoGar3.GL873550         C 0 I 1
s canFam3.chr12              382386 17 +  72498081 ---GTCGGGCCCT-CCCTCGA
i canFam3.chr12            C 0 C 0
e micMur3.chr6               659110 17 + 123392446 I
e mm10.chr17               59006316  0 -  94987271 C

a score=10222111.000000
s hg38.chr6_GL000254v2_alt  1899377 659 +   4827813 GTCCTTCTTTCAGGCAATACTCAGCCTTCTCCTTCTAAAAGCCC--AACTCTCTCCAGCCCCTCT-----GGAAAGGAAGACTGTGGCC-CGCTGTGGGGAGCCGAGTGGCTAGCGGAGAACTG-------TGGCATCCCAGGCCCACCGTCTTCAC--------------CAGTAGCAGCCCGCTTTCCCCCAAAGCTCTGACTTCCGG-GTAGGCGGGAAA------GCC-GGGACCAG------CGCCC-CCTCCCACCCTCACCGATTTGGGTCGTAGCCTCGTGGACCCAGCCCCTGAGAAGGCTGCTGGTTAAGCCTGCGGATATGATGGGTCACAGACTCCCCGTCCGAGGTGTCGGTCTGTTCCTCTCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGCAGCCCATCTTGAAGCCCTGCGGGGAGGGGCCGGTGACGCCAGTGCTGGCCAGCTCTCAGGGGCCA----TAAGACCCTC-T-CCCCCAT-CGGCCTGACTCCCTTTCATC-CCACTCAACTTCTTCCGATGTTCAGTCCTCCCAGACACCCTATTTGGGACCCTCCCGGATGTGCGT-GGGG--GGAGTCACTCCTT---CAGGGAGCAGTGGGGACGGCGCCCCGTGCTAGCTGGAG--GGATTCCCCTCCCCCAACTCTCCATCCTTCCCCACCCCTTCCAGATGTA-GGGGGGGTGGGG------G-
s panTro5.chr6             30745047 661 + 175400573 GTCCTTCTTTCAGGCAATATTCAGCCTTCTCCTTCTAAAAGCCC--AACTCTCTCCAGCCCCTCT-----GGAAAGGAAGACTGTGGCC-CGCTGTGGGGAGCCGAGTGGCTAGCGGAGAACTG-------TGGCATCCCAGGCCCACCCTCTTCAC--------------CAGTAGCAGCCCGCTTTCCCCCAAAGCTCTGACTTCCGG-GTAGGCGGGAAA------GCC-GGGACCAG------CGCCC-CCTCTCACCCTCACCGATTTGGGTCGTAGCCTCGTGGACCCAGCCCCTGAGAAGGCTGCTGGTTAAGCCTGCGGATATGATGGGTCACAGACTCCCCGTCCGAGGTGTCGGTCTGTTCCTCTCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGCAGCCCATCTTGAAGCCCTGCGGGGAGGGGCCGGTGACGCCAGTGCTGGCCAGCTCTCAGGGGCCA----TAAGACCCTC-T-CCCCCAT-CGGCCTGACTCCCTTTCATC-CCACTCAACTTC---CGATGTTCAGTCCTCCCAGACACCCTATTCGGGACCCTCCCGGATGTGCGT-GGGG--GGAGTCACTCCTC---CAGGGAGCAGTGGGGACGGCGCCCCGTGCTAGCTGGAG--GGATTCCCCTCCCCCAACTCTCCATCCTTCCCCACCCCTTCCAGATGTA-GGGGGGGTGGGG-TGGGGG-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31168675 662 + 173848474 GTCCTTCTTTCAGGCAATATTCAGCCTTCTCCTTCTAAAAGCCC--AACTCTCTCCAGCCCCTCT-----GGAAAGGAAGACTGTGGCC-CGCTGTGGGGAGCCGAGTGGCTAGCGGAGAACTG-------TGGCATCCCAGGCCCACCCTCTTCAC--------------CAGTAGCAGCCCGCTTTCCCCCAAAGCTCTGACTTCCGG-GTAGGCGGGAAA------GCC-GGGACCAG------CGCCC-CCTCTCACCCTCACCGATTTGGGTCGTAGCCTCGTGGACCCAGCCCCTGAGAAGGCTGCTGGTTAAGCCTGCGGATATGATGGGTCACAGACTCCCCGTCCGAGGTGTCGGTCTGTTCCTCTCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGCAGCCCATCTTGAAGCCCTGCGGGGAGGGGCCGGTGACGCCAGTGCTGGCCAGCTCTCAGGGGCCA----TAAGACCCTC-T-CCCCCAT-CGGCCTGACTCCCTTTCATC-CCACTCAACTTC---CGATGTTCAGTCCTCCCAGACACCCTATTCGGGACCCTCCCGGATGTGCGT-GGGG--GGAGTCACTCCTC---CAGGGAGCAGTGGGGACGGCGCCCCGTGCTAGCTGGAG--GGATTCCCCTCCCCCAACTCTCCATCCTTCCCCACCCCTTCCAGATGTAGGGGGGGGTGGGG-TGGGGG-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     675671 659 +   2037526 GTCCTTCTTTCAGGCAATATTCAGCCTTCTCCTTCTAAAAGCCC--AACTCTCTCCAGCCCCTCT-----GGAAAGGAAGATTGTGGCT-CGCTGTGGGGAGCCGAGTGGCTAGCGGAGAACTG-------TGGCATCCCAGGCCCACCGTCTTCAC--------------CAGTAGCAGCCCGCTTTCCCCCAAAGCTCTGACTTCCGG-GTAGGCGGGAAA------GCC-GGGACCAG------CGCCC-CCTCCCACCCTCACCGATTTGGGTCGTAGCCTCGTGGACCCAGCCCCTGAGAAGGCTGCTGGTTAAGCCTGCGGATATGATGGGTCACAGACTCCCCGTCCGAGGTGTCGGTCTGTTCCTCTCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGCAGCCCATCTTGAAGCCCTGCGGGGAGGGGCCGGTGACGCCAGTGCTGGCCAGCTCTCAGGGGCCA----TAAGACCCTC-T-CCCCCAT-CGGCCTGACTCCCTTTCATC-CCACTCAACTTCTTCCGATGTTCAGTCCTCCCAGACACCCTATTCGGGACCCTCCCGGATGTGCGT--GGG--GGAGTCACTCCTC---CAGGGAGCAGTGGGGACGGCGCCCCGTGCTAGCTGGAG--GGATTCCCCTCCCCCAACTCTCCATCCTTCCCCACCCCTTCCAGATGTAGGAGGGGGTGGGG------G-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75344272 666 + 122973662 GTCCTTCTTTCAGGCAATATTCAGCTTCCTCCTTCTAAAAGCCC--AACTCTCCCCAGCCCCTCT-----GGAAAGGAAGATTGTGGCC-CGCTGTGGGGAGCCGAGTGGCTAGCGGAGAACTG-------TGGCATCCCAGGCCCACCGTCTTCAC--------------CAGTAGCAGCCCGCTTTCCCCCAAAGCTCTGACTTCCGG-GTAGGCTGGAAA------GCC-GGGACCAG------CGCCC-CCTCCCACCCTCACCGATTTGGGTCGTAGCCTCGTGGACCCAGCCCCTGAGAAGGCTGCTGGTTAAGCCTGCGGATATGATGGGTCACAGACTCCCCGTCCGAGGTGTCGGTCTGTTCCTCTCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGCAGCCCATCTTGAAGCCCTGCGGGGAGGGGCCGGTGACGCCAGTGCTGGCCAGCTCTCAGGGGCCA----TAAGACCCTCTT-CCCCCAT-CGGCCTGACTCCCTTTCATC-CCACTCAACTTCTTCCGACGCTCAGTCCTCCCAGACACCCTATTCGGGACCCTCCCGGATGTGCGT-GGGG--GGAGTCACTCCTC---CAGGGAGCAGTGGGGACGGCGCCCCGTGCTAGCTGGAG--GGATTCCCCTCCCCCAACTCTCCATCCTTCCCCACCCCTTCCAGATGTAGGGGGGGGTGGGG-TGGGGG-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31255752 664 + 172585720 GTCCTTCTTTCAGGCAATACTCAGCCTCCTCCTCCTAAAAGCCC--AACTCTCTCCAGCCCCTCT-----GGAAAGCAAGATTGTGGCC-CGCACTGGGGAGCCGAGGGGCTAGCGGAGAACTG-------TGGCATCGCAGGCCCACCGTCTTCAC--------------CAGCAGCAGCCCGCTTTCCCCCAAAGCTTTGACTTCCGG-GTAGGCGGGAAA------GCC-GGGACCAG------CGCCC-CCTCCCACCCTCACCGATTTGGGTCGTAGCCTCGTGGACCCAGCCCCTGAGAAGGCTGCTGGTTAAGCCTGCGGATATGATGGGTCACAGACTCCCCGTCCGAGGTGTCTGTCTGTTCCTCTCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGCAGCCCATCTTGAAGCCCTGCGGGGAGGGGCCGGTGACGCCAGTGCTGGCCAGCTCTCAGGGGCCA----TAAGACCCTC-T-CCCCCAC-CGGTCTGACTCTTCTTCATC-CCACTCAACTTCTTCCGACGCTCTGTCCTCCCAACCACCCTATTCGGGACCCTCCCGGATGTGCGTGGGGG--GGAATCACTCCTC---CAGGGAGCAGTAGGGACGGCGCCCCGTGCGAGCTGGAG--GGATTCCCCTCCCCCAACTCTCCATCCTTCCCCACCCCTTCCAGATGT--GGGGGGGTGGTG-TGGGAG-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30544760 664 - 170955103 GTCCTTCTTTCAGGCAATACTCAGCCTCCTCCTCCTAAAAGCCC--AACTCTCTCCAGCCCCTCT-----GGAAAGCAAGATTGTGGCC-CGCACTGGGGAGCCGAGGGGCTAGCGGAGAACTG-------TGGCATCGCAGGCCCACCGTCTTCAC--------------CAGCAGCAGCCCACTTTCCCCCAAAGCTCTGACTTCCGG-GTAGGCGGGAAA------GCC-GGGACCAG------CGCCC-CCTCCCACCCTCACCGATTTGGGTCGTAGCCTCGTGGACCCAGCCCCTGAGAAGGCTGCTGGTTAAGCCTGCGGATATGATGGGTCACAGACTCCCCGTCCGAGGTGTCTGTCTGTTCCTCTCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGCAGCCCATCTTGAAGCCCTGCGGGGAGGGGCCGGTGACGCCAGTGCTGGCCAGCTCTCAGGGGCCA----TAAGACCCTC-T-CCCCCAC-CGGTCTGACTCTTCTTCATC-CCACTCAACTTCTTCCGACGCTCTGTCCTCCCAACCACCCTATTCGGGACCCTCCCGGATGTGCGTGGGGG--GGAATCACTCCTC---CAGGGAGCAGTAGGGACGGCGCCCCGTGCGAGCTGGAG--GGATTCCCCTCCCCCAACTCTCCATCCTTCCCCACCCCTTCCAGATGT--GGGGGGGTGGGG-TGGGAG-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     841044 664 +   1495729 GTCCTTCTTTCAGGCAATACTCAGCCTCCTCCTTCTAAAAGCCC--AACTCTCTCCAGCCCCTCT-----GGAAAGCAAGATTGTGGCC-CGCACTGGGGAGCCGAGGGGCTAGCGGAGAACTG-------TGGCATCGCAGGCCCACCGTCTTCAC--------------CAGCAGCAGCCCGCTTTCCCCCAAAGCTCTGACTTCCGG-GTAGGCGGGAAA------GCC-GGGACCAG------CGCCC-CCTCCCACCCTCACCGATTTGGGTCGTAGCCTCGTGGACCCAGCCCCTGAGAAGGCTGCTGGTTAAGCCTGCGGATATGATGGGTCACAGACTCCCCGTCCGAGGTGTCTGTCTGTTCCTCTCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGCAGCCCATCTTGAAGCCCTGCGGGGAGGGGCCGGTGACGCCAGTGCTGGCCAGCTCTCAGGGGCCA----TAAGACCCTC-T-CCCCCAC-CGGTCTGACTCTTCTTCATC-CCACTCAACTTCTTCCGACGCTCTGTCCTCCCAACCACCCTATTCGGGACCCTCCCGGATGTGCGTGGGGG--GGAATCACTCCTC---CAGGGAGCAGTAGGGACGGCGCCCCGTGCGAGCTGGAG--GGATTCCCCTCCCCCAACTCTCCATCCTTCCCCACCCCTTCCAGATGT--GGGGGGGTGGTG-TGGGAG-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      64180 664 -    811324 GTCCTTCTTTCAGGCAATACTCAGCCTCCTCCTTCTAAAAGCCC--AACTCTCTCCAGCCCCTCT-----GGAAAGCAAGATTGTGGCC-CGCACTGGGGAGCCGAGGGGCTAGCGGAGAACTG-------TGGCATCGCAGGCCCACCGTCTTCAC--------------CAGCAGCAGCCCGCTTTCCCCCAAAGCTCTGACTTCCGG-GTAGGCGGGAAA------GCC-GGGACCAG------CGCCC-CCTCCCACCCTCACCGATTTGGGTCGTAGCCTCGTGGACCCAGCCCCTGAGAAGGCTGCTGGTTAAGCCTGCGGATATGATGGGTCACAGACTCCCCGTCCGAGGTGTCTGTCTGTTCCTCTCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGCAGCCCATCTTGAAGCCCTGCGGGGAGGGGCCGGTGACGCCAGTGCTGGCCAGCTCTCAGGGGCCA----TAAGACCCTC-T-CCCCCAC-CGGTCTGACTCTTCTTCATC-CCACTCAACTTCTTCCGACGCTCTGTCCTCCCAACCACCCTATTCGGGACCCTCCCGGATGTGCGTGGGGG--GGAATCACTCCTC---CAGGGAGCAGTAGGGACGGCGCCCCGTGCGAGCTGGAG--GGATTCCCCTCCCCCAACTCTCCATCCTTCCCCACCCCTTCCAGATGT--GGGGGGGTGGGC-TGGGAG-
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30094701 662 -  71996105 GTCCTTCTTTCAGGCAATACTCAGCCTCCTCCTTCTAAAAGCCC--AACTCTCTCCAGCCCCTCT-----GGAAAGCAAGATTGTGGCC-CGCACTGGGGAGCCGAGGGGCTAGCGGAGAACTG-------TGGCATCGCAGGCCCACCGTCTTCAC--------------CAGCAACAGCCCGCTTTCCCCCAAAGCTCTGACTTCCGG-GTAGGCGGGAAA------GCC-GGGACCAG------CGCCC-CCTCCCACCCTCACCGATTTGGGTCGTAGCCTCGTGGACCCAGCCCCTGAGAAGGCTGCTGGTTAAGCCTGCGGATATGATGGGTCACAGACTCCCCGTCCGAGGTGTCTGTCTGTTCCTCTCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGCAGCCCATCTTGAAGCCCTGCGGGGAGGGGCCGGTGACGCCAGTGCTGGCCAGCTCTCAGGGGCCA----TAAGACCCTC-T-CCCCCAC-CGGTCTGACTCTCTTTCATC-CCACTCAACTTCTTCCGACACTCTGTCCTCCCAACCACCCTATTCGGGACCCTCCCGGATGTGCGTGGGGG--GGAATCACTCCTC---CAGGGAGCAGTAGGGACGGCGCCCCTTGCGAGCTGGAG--GGATTCCCCTCCCCCAACTCTCCATCCTTCCCCACCCCTTCCAGATGT----GGGGGCGGGG-TGGGAG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     101491 664 +    779361 GTCCTTCTTTCAGGCAATACTCAGCCTCCTCCTTCTAAAAGCCC--AACTCTCTCCAGCCCCTCT-----GGAAAGCAAGATTGTGGCC-CGCACTGGGGAGCCGAGGGGCTAGCGGAGAACTG-------TGGCATCGCAGGCCCACCGTCTTCAC--------------CAGCAGCAGCCCGCTTTCCCCCAAAGCTCTGACTTCCGG-GTAGGCGGGAAA------GCC-GGGACCAG------CGCCC-CCTCCCACCCTCACCGATTTGGGTCGTAGCCTCGTGGACCCAGCCCCTGAGAAGGCTGCTGGTTAAGCCTGCGGATATGATGGGTCACAGACTCCCCGTCCGAGGTGTCTGTCTGTTCCTCTCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGCAGCCCATCTTGAAGCCCTGCGGGGAGGGGCCGGTGACGCCAGTGCTGGCCAGCTCTCAGGGGCCA----TAAGACCCTC-T-CCCCCAC-CGGTCTGACTCTTCTTCATC-CCACTCAACTTCTTCCGACGCTCTGTCCTCCCAACCACCCTATTCGGGACCCTCCCGGATGTGCGTGGGGG--GGAATCACTCCTC---CAGGGAGCAGTAGGGACGGCGCCCCGTGCGAGCTGGAG--GGATTCCCCTCCCCCAACTCTCCATCCTTCTCCACCCCTTCCAGATGT--AGGGGGGTGGGC-TGGGAG-
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     764912 664 -   1829203 GTCCTTCTTTCAGGCAATACTCAGCCTCCTCCTTCTAGAAGCCC--AACTCTCTCCAGCCCCTCT-----GGAAAGCAAGATTGTGGCC-CGCACTGGGGAGCCGCGTGGCTAGCGGAGAACTG-------TGGCATCCCAGGCCCACCGTCTTCAC--------------CAGTAGCAGCCCGCTTTCCCCCAAAGCTCTGACTTCCGG-GTAGGCGGGAAA------GCC-GGGACCAG------CGCCC-CCTCCCACCCTCACCGATTTGGGTCGTAGCCTCGTGGACCCAGCCCCTGAGAAGGCTGCTGGTTAAGCCTGCGGATATGATGGGTCACAGACTCTCCGTCCGAGGTGTCGGTCTGTTCCTCTCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGCAGCCCATCTTGAAGCCCTGCGGGGAGGGGCCGGTGACGCCAGTGCTGGCCAGCTCTCAGGGGCCA----TAAGACCCTC-T-CCCCCAC-CAGTCTGACTCTCCTTCATC-CCACTCAACTTCTTCCGACGCTCCGTCCTCCCAGCCACCCTATTCGGGACCCTCCCGGATGTGCGTGGGGA--GGAATCACTCCTC---CACGGAGCAGCGGGGACGGCGCCCCGTGCGAGCTGGAG--GGATTCCCCTCCCCCAACTCTCCATCCTTCCCCACCCCTTCCAGATGT--GGGGGGGTGGGG-TGGGAG-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30925512 658 + 171630274 GTTCCTCTTTCACGCAATATTCAGCCTCCTCCTTTTAAAAGACA--AATTCTCTCCAGCCTCTCT-----GGAAAGGAAGATTGTGACC-TGCTCTGGGGAGCCGAGAGGCCAGCGGAGAACTG-------TGGCATCCTAGGCCCACCGTCTTCAC--------------CAGTAGCATCCTGCTTTCCCCCAAAGCTCTGACTTCCGG-GTAGGCGGGAAA------GTC-GTAACCAG------TGCCC-CCTCCCACCCTCACCGATTTGGGTCGTAGCCTCGCGGACCCAGCCCCTGAGAAGGCTGCTGGTTAAGCCTGCGGATATGATGGGTCACAGACTCCCCGTCCGAGGTATCGGTCTGTTCCTCCCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGTAGCCCATCTTGAAGCCCTGCGGAGAGGGGCGGGTGACGCCAGGGCTGGCCAGCTCTCAAGCGCCG----TAAGACCCTC-T-CCCGCGT-CGGCCTGACTCTCCTTCATC-CCACTCAACTTCTTTGGAGGCTCCGTCCTCCCAGCCACCCTGTTCGGGACCCTCCCGGATGTGCGCGGGGG----AGTCACTCCTC---CAGGGAGCAGTGCGGACCGTGCCCTGTACGAGCTGAAG--GGATTCCCCTCCCCCAATTCTCCATCTTTCCCCACCCCTTCCAGATGTA-GGG-----GGGG-TGGGGA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            97122 669 -    750284 GTTCCTCTTTCAGGCAATATTCAGCCTCCTCCTTTTAAAAGGCA--AATTCTCTGCAGCCTCTCT-----GGAAAGGAAGATTGTGGCC-TGCTCTGGGGAGCCGAGCGGCCAGCGGAGAACTG-------CGGCATCCTAGGCCCACCGTCTTCAC--------------CAGTAGCAGCCCGCTTTCCCCCAAAGCTCTGATTTCCGG-GTAGGCGGGAAA------GTC-GTAACCAG------TGCCC-CCTCCCACCCTCACCGATTTGGGTCGTAGCCTCGCGGACCCAGCCCCTGAGAAGGCTGCTGGTTAAGCCTGCGGATATGATGGGTCACAGACTCCCCGTCGGAGGTGTCGGTCTGTTCCTCCCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGTAGCCCATCTTGAAGCCCTGCGGGGAGGGGCCGGTGACGCCAGGGCTGGCCAGCTCTCACGCGCCGCCGTTAAGACCCTC-T-CCCGCGT-CGGCCTGACTCTCCTTCATC-CCACTCAACTTCTTTGGAGGCTCCGTCCTCCCAGCCACCCAGTTCGGGACCCTCCCGGATGTGCGTGGGGG--GTAGTTACTCCTC---CAGGGAGCAGTGCGGACCGTGCCCTGTGCGAGCTGAAG--GGATTCCCCTCCCCCAATTCTCCATCTTTCCCCACCCCTTCCAGATGTA-AGGGGGGTGGGG-TGGGGA-
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1345085 664 -   1771730 GTTCCTCTTTTAGGCAATATTCAGCCTCCTCCTTTTAAAAGACA--AATTCTCTCCAGCCTCTCT-----GGAAAGGAAGATTGTGGCC-TGCTCTGGGGAGCCGAGTGGCCAGCGGAGAACTG-------CGGCATCCTAGGCCCACCGTCTTCAC--------------CAGTAGCAGCCCGCTTTCCCCCAAAGCTCTGACTTCCGG-GTAGGCGGGAAA------GTG-GTAACCAG------TGCCC-CCTCCCATCCTCACCGATTTGGGTCGTAGCCTCGCGGACCCAGCCCCTGAGAAGGCTGCTGGTTAAGCCTGCGGATATGATGGGTCACAGACTCCCCGTCCGAGGTGTCGGTCTGTTCCTCCCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGTAGCCCATCTTGAAGCCCTGCGGGGAGGGGCCGGTGACGCCAGGACTGGCCAGCTCTCACGCGCCG----TAAGACCCTC-T-CCCCCAT-CGGCCTGACTCTC---CATC-CCACTCAACTTCTTTGGAGGCTCCGTCCTCCCAGCCACCCTATTCGGGACCCTCCTGGATGTGCGTGGGGGGGGGAGTCACTCCTC---CAGGGAGCAGTGCGGACCGTGCCCTGTGCGAGCTGAAG--GGATTCCCCTCCCCCAATTCTCCATCTTTCCCCACCCCTTCCAGATGTA-GGGGGGGTGGGG-TGGGGA-
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      44109 664 -    566255 GTTCCTCTTTCACGCAATATTCAGCCTCCTCCTTTTAAAAGACA--CATTCTCTCCAGCCTCTCT-----GGAAAGGAAGACTGTGGCC-TGCTCTGGGGAGCCGACTGGCCAGCGGAGAACTG-------TGGCATCCTAGGCCCACCGTCTTCAC--------------CAGTAGCAGCCCGCTTTCCCCCAAAGCTCTGACTTCCGG-GTAGGCGGGAAA------GTC-GTAACCAG------TGCCC-CCTCCCACCCTCACCGATTTGGGTCGTAGCCTCGCGGACCCAGCCCCTGAGAAGGCTGCTGGTTAAGCCTGCGGATATGATGGGTCACAGACTCCCCGTCCGAAGTGTCGGTCTGTTCCTCTCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGTAGCCCATCTTGAAGCCCTGCGGGGAGGGGCCGGTGACGCCAGGGCTAGCCAGCTCTCACGCGCCG----TAAGACCCTC-T-CCCCCGT-CGGCCTGACTCTCCTTCATC-CCACTCAACTTCTTTGGAGGCTCTGTCCTCCCAGCCACCCTGTTCGGGACCCTCCCGGATGTGCGTAGGGG---GAGTCACTCCTC---CAGGGAGCAGTGCGGACCGTGCCCTGTGCGAAGTGAAG--GGATTCCCCTCCCCCAATTCTCCATCTTTCCCCACCCCTTCCAGATGTA-GAGGGGGTGGGG-TGGGGA-
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               659127 675 + 123392446 GTCCCTCTTTCACGATATATTCAGCCTCCCTCTTTTAAACCCCA--AACTCTCTCCAGCCCCTCA-----GGAAGGGAAGACTGTAGCC-CACTCTGGAGAGCCAAGTGGCCGGCAGAGAACTG-------TGGCATCCCAGCCCCACCGCCTCCAC-TCCAAGCCTCTCCCAGCAGCAGCCCGCTCTCCCTCAA-GCTCTGACTTCCGG-GTAGGCAGGGAT------GCCATGGACCAG------CACCC-CCTCCCACCCTCACCGATTTGGGTCGTAGCCTCGCGGACCCAGCCCCTGAGAAGGCTGCTGGTTGAGCCTGCGGATGTGATGGGTCACAGACTCCCCGTCAGAGGTGTCCGTCTGCTCCTCCCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGTAGCCCATCTTGAAGCCCTGCGGGGAGGAGCTGGTGACGCCAGTGCTGGCCGGCTCTTCGGTGCTA----TAAGACCCTG-T-CTCCGATCCGCTCTGACTCCTCCTCACC-CCACCCAACTTCTTTGGAAGCTCCGTCCTCCCAGCCACCCTCCCCAGGCCCCTCCCGGATGTGCGT--GGG--GGAGTCACTCCTC---CAGGGAGCTGCGAGGATGGCGCCCCGTTGGAGCTGGAG--GGATTCCCCTCCCCCAATTCTCCATCCTTTCCCACCCCTTCCAGATGT--AGGGGCCAGGG--CGGGGG-
i micMur3.chr6             I 17 I 57
s proCoq1.NW_012149775v1     690654 675 -   1411461 GTCCCTCTTCCACGATATATTCGGCCTCCCTCTTTTAAAAGCCA--AACTCTCTTCAGCCCCTCA-----GGAAGGGAAGATTGTGGCC-CGCTCTGGAGAGCCAAGTGGCCTGCGGAGAACCG-------TGGCATCCCAGCCCCGCCGCCTCCAC-TCCAAGCCTCCCCCAGCAGCAGCCCGCTCTCCCCCAA-GCTCTGACTTCCGG-GTAGGCAGGGAA------GCCAGGGACCAG------CGCCC-CCTCCCACCCTCACCGATTTGGGTCATAGCCTCGCAGACCCGGCCCCTGAGAAGGCTGCTGGTTGAGCCTGCGGATGTGATGGGTCACAGACTCCCCGTCCGAGGTGTCGGTCTGCTCCTCCCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGTAGCCCATCTTGAAGCCCTGCGGGGAGGGGCTGGTGACGCCAGTGCTGGCCGGCTCTCAGGGGCCG----TAAGACCCTC-T-CCCCGAT-CGGTCTGACTCCTCCTCACC-CCACCCAGCTTCTTTGGAGGCTCCGTCCTCCCAGCCACCCTCTCCAGGACCCTCCCGGATGTGCGT--GGG--GGAGTCACTCCTC---CAGGGAGCTGCGAGGATGGCGCCCCGTTGGAGCTGGAG--GGATTCCCCTCCCCCAATTCTCCATCC-TTCCCACCCCTTCCAGATGT--AGGGGGCCGGGGACGGGGG-
i proCoq1.NW_012149775v1   C 0 I 2
s otoGar3.GL873550           710164 650 +  18854210 GTCCCTCCTTCACACAGTATTCGGCCTCATTCTTTTAAAAGCCA--AACTCTTTCCAGTTCCTCT-----GGAAGGGAAGACTATGGCCTTGCTC------------------------------------TGGCATCCCAGCTCCACAGCCTCCACTTTTAAGCCTCCAAAAGCAGCAGCCTGCTTTTCCACAACGCTCTGAGTTCCGG-GTAGGCAGGAAA------GCCAGTGACCAG------CGCCC-CCTCCCACCCTCACCGATTTGGGTCGTAGCCTCGTGAACCCAGCCCCTGAGAAGGCTGCTGGTTGAGTCTGCGGATATGATGGGTCACAGACTCCCCGTCAGAGGTGTCGGTCTGCTCCTCCCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAACTGGAGCGTAGCCCATCTTGAAGCCCTGCGGGGAGGGGCTGGTGACGCCAGTGCTGGCCGACTCTCAGGGGCCA----TGAGACCCTC-T-CCCCGAT-CGACCTGACTCTTCTTCACC-CCACCCAACTTCTTGGGAGGCTCCGTCCTCCCAACCACCCTACCCAGGACCCTCCCGGATGTGCGT-GGGG--GGAGTCACTCCTC---CAGGGAGCTGCGAGGATGGCGCCCCGTTCGAGCTGGAG--GGATTCCCCTCCCCCACATCTCCATCCTTTCCCACCCCTTCCAGTTGT--AGGGGGCTAGGG-TGGGGG-
i otoGar3.GL873550         I 1 I 1
s mm10.chr17               59006316 591 -  94987271 ---------------------------------------AAACA--AACTCTTGACAGTCCCCATTGGAAGGCAAGAAAGATTGTGGCC-CATCCAGG------------------GAGAACCACCTTCCTTGGC-TTCCAGCCTCACTAGTTCCAC--------------TTTCAAT------CCTTCATCGGAAGCTTTTCCTAAGGGTGAGGGCGGGGAA------ACT-GCGGCCAG------CGCCCTTCTCCTTGGCTTACCGGTTGGGGTCGTAGCCTCTGGGCCCCAGGCCCTGGGAAGGTTGCTGGTTGAGCCTGCGGATATGATGGGTCACGGATTCCCCATCCGACGTGTCCGTCTGCTCCTCCCGCCGCTCCCGGCTACCGCTGCGGCTGTTGGAACTGGAGCGCAGCCCATCTTGGAGCCCTGAGGGGAGGGGCCGGTGACGCCGGTGTAGACCGGTTCTTAGGGGACC----TAAAGCCCCC-CGAGCCGGT-AGGACAAGCTCTTCTTCAGC-CGACCCAACTTCTCCAGAGGCTCCATCTTCCCAACCGCGCGCCCCAACCCCGTCCCGGATGGGCCT-GGAG--GTCGTCACAGCGC---CCTGTGGCAGCAGCAGCAG----------AAGCAGAAGCAGAGTTTCCCATCCCCCACCCTCCACCCCTCCCCGTCCCGCC--GCTGC--GGGAA---------------
i mm10.chr17               C 0 C 0
s canFam3.chr12              382403 654 +  72498081 GTGTCTGTCCCA----------AGCCTCGCCCTTCTGAGGGCCAAGAACTCTCTGCAGCCCCTCC-----GGAAGGGAGGCCTGTGGCC-CGTTCCGTGGGCCCAGCTGCCTCG----GAGCCG-------CGGCATCCCAGACCCACTCGC-CCAC--------------TGGTAGCAGCCACCTTCTCCCCAACACGCTTGTCTCCAG-GCGGGCGGGGAACAcccggcc-ggcgccggcgctcccgccc-ccgcccgcTCTCACCGGTTCGCATCGTAGCCCCGAGGGCCCAGCCCCTGGGAAGGCTGCTGGTTGAGCCTGCGGATATGGTGGGTCATGGACTCTCCGTCCGAGGTGTCGGTCTGCTCCTCCCGCCGCTCCCGGCTCCCGCTGCGGCTGTTGGAGCTGGATCGCAGCCCATCTTGGAGCCCTGCGGGGAGGAGGCAGTGACGCCGATACCGGCCGGCTCCAAGCAGCT-----CGAGACCCCG-T-CCCCGGT-CCAGCTGGCTTCCC--CACCACCACCCCATTCCTTTCGAGG--CCGTCCTCCCA-CCATCCTTCCCAAGACCCCAGAGGATGCGCGT--CGG--GGAGTCATTCCTTCTGCAGGGTTCTGCGGGAACGACGCCCTGTCCGAGCGGGAG--GGATTCCCCGCCCCCAA-TCTCCGTCCTCCTCCGTTCCTTCGG-------GGGAGGCCGGGC-TGAGAGA
i canFam3.chr12            C 0 C 0

a score=646596.000000
s hg38.chr6_GL000254v2_alt  1900036 56 +   4827813 ATCCCCTCCGCGATAGGCCGCGAGGGTTGACGCG---------------------GTCCCACGACCCCCTCCCACG-A
s panTro5.chr6             30745708 56 + 175400573 ATCCCCTCCGCGATAGGCCGCGAGGGTTGACGCG---------------------GTCCCACGACCCCCTCCCACG-A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31169337 56 + 173848474 ATCCCCTCCGCGATAGGCCGCGAGGGTTGACGCG---------------------GTCCCACGACCCCCTCCCACG-A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     676330 56 +   2037526 ATCCCCTCCGCGATAGGCCGCGAGGGTTGACGCG---------------------ATCCCACGACCCCCTCCCACG-A
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75344938 56 + 122973662 CTCCCCTCCGCGATAGGCCGCGAGGGTTGACGCG---------------------GTCCCACGACCCCCTCCCACG-A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31256416 56 + 172585720 ATCCCCTCCGCGATAGGCCGCGAGGGTTGGCGCG---------------------GTCCCACGACCCCCTCCCACG-A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30545424 56 - 170955103 ATCCCCTCCGCTATAGGCCGCGAGGGTTGGCGCG---------------------GTCCCACGACACCCTCCCACG-A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     841708 56 +   1495729 ATCCCCTCCGCGATAGGCCGCGAGGGTTGGCGCG---------------------GTCCCACGACCCCCTCCCACG-A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      64844 56 -    811324 ATCCCCTCCGCGATAGGCCGCGAGGGTTGGCGCG---------------------GTCCCACGACCCCCTCCCACG-A
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30095363 56 -  71996105 ATCCCCTCCGCGATAGGCCGCGAGGGTTGGCGCG---------------------GTCCCACGACCCCCTCCCACG-A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     102155 56 +    779361 ATCCCCTCCGCGATAGGCCGCGAGGGTTGGCGCG---------------------GTCCCACGACCCCCTCCCACG-A
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     765576 56 -   1829203 ATCCCCTCCGCGATAGGCCTCGAGGGTTGGCGCG---------------------GTCCCACGACCCCCTTCCACG-A
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30926170 56 + 171630274 ATCCCCTCCGCGAAAGGCCTCGAGGGTCAGCGCT---------------------CTCCCACGATCCCCTCCCACG-C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            97791 56 -    750284 ATCCCCTCCGCGAAAGGCCCCGAGGGTCGGCGCT---------------------CTCCCGCGATCCCCTCCCACG-C
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1345749 56 -   1771730 ATCTCCTCCACGAAAGGCCTTGAGGGTCGGCGGT---------------------CTCCCACGATCCCCTCCCACG-C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      44773 56 -    566255 ATCCCCTCAGCGAAAGGCCTCGAGGGTCGGCGCT---------------------CTCCCACGATCCCCTCCCCCG-C
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     691331 54 -   1411461 ATCCCCTCCTCGACAGCCCGC-GGGGTCGGAGCG---------------------CGCCCTCCTCCCCCTCCCACG--
i proCoq1.NW_012149775v1   I 2 C 0
s otoGar3.GL873550           710815 56 +  18854210 ATCCTCTCCGCCACAGCCTGCAGGGGTCGGCGCG---------------------TGCCCATCAACCCCTCCCACGC-
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               59006907 55 -  94987271 ACCCCCACCGTGGCAGCCCACGCGGGATCGCGAG---------------------AGCCCACCCACCCACCCCCCG--
i mm10.chr17               C 0 C 0
s canFam3.chr12              383057 77 +  72498081 AGCCCCTCGACTgggccccgcgggcgtgggcgcgcggccaccgccgggcccgcccgccccgcccgccccgcccgcc-c
i canFam3.chr12            C 0 C 0
e micMur3.chr6               659802 57 + 123392446 I

a score=27724495.000000
s hg38.chr6_GL000254v2_alt  1900092 1773 +   4827813 TCCCCAGAGGTGCAGCGGGCACACCCCTCCTTCC-AGATGTGCGGAAGCCCGAGCCCCGCCCCCTCCTCCCGCT-------CCCGCACTGACCtctcttccgctcccgtttgtcctgcaactgcttcttcttctgcttcACGCTGAATGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCCGCCCTCCGCCGAGCT-CCCGCCGCCTCAACTGACTG-------CCCCCCGGGGCAGCCCCCGCCGCAGGGGCCCGGGACCCTAGAGGAGGCGGGGCTAGCAGGTGACGTCAGCGGGCGGGCCCGACAGAATTACCGCCGCGGCGGCGATGGAAGGCGGACGGGGGAGAT--ATAGTCACTTCCCTCCAGGAGCGAGGCGAGAGGATGATGCGGGGTGGGCTACTGGCACGTGAGAGCCAGTGGCACCGAGAGGGCGCCCCG-GCGGCGAGGAAGGAGGCGCGCGTGGGAGGACCAGGCTAACTCCGTCACGGACGCTACCAACTCGCGTTCGGAGGA-GGGGGGGCGCGTGTCATCACTACCTTGCGCTCCCGGGAGAACCTACCACTCACCTGGAGGGGGCGGCGGAGCGGAGGGCGGGGCCTACTACCTAGGGGAGA-GGGGGCGTGGACACGCTGAGGCTATACTACAAA-GCCCC------GGGCTTGACCTTAGT-GGAAAGCCGAGAC--TGCGT-------------CCAGGTTGCTGGACTACACCGGGGGCACGGTCAGAGGTCTTTAGGGGAGGGCGGCGGTCTG-AGAGTCCTGGGTGCCGACCTGTTGGGACCCAAATTCCTTGTGGGAACGATGATAAGGAGCAGGTTTACAGATCAT-AAGTGCAAAAGCGGGCGAGAAGGGAAACCCAAGCGGGACAAGGACTTTTGGGGGGAGGTCAAAGGGCACGAAGTTGTGCCTGCAGCTGTTACCATAGTAACCGAGGACCGGATGTGGCGATCTTACGGTGCGACAGTC--CTCTTCTCAGGCCCTCTG-GCCCGAGAGCCTGTTGACTCTGTGACACACTCTGAGGAGCTGGTTGTGG----------TGTTTTCCAGCGAGGGAAGAAAAGAGTAA-TTTT---------TTCAAAGCATTTATAGAAACGCAGCAAAGGGAAGGTGTGAGGTT-GCCGCCATGCCTGGCAGAGACGGAGGGAGGCAGTTGGCTCCGGAATGCGGCCGCCGCAGATGTTCTCCGCAACCTTCCGGAAGTGGAATGGCGGGAGCCTCAGCATTGCTGCCCACCGACC---CCCCGGAAGCGGAAACAGAAT-CCCCGCGTGCCCCTTCCTCACTACCCTCCAAATCCCGCTGCAGCCATTGCCGCAGACACGATGCCGAAACGAAAGAAGCAGAATCATCACCA---GCCACCGACACAGCAGCAG------CCCCCGCTGCCCGAGCGGGAAGAGACTGGAGATGAGGAGGATGGGAGTCCCATCGGTGAGGGGTCTGGGAGGGATGTGCACATGCCTGTCAAGCCCGTCCGGGCAAGGGGCTAGGGGCTAA-TAAGGTGCGAAGGA--GGGGGCTGTAACGGAAGGAGGAAGGGCGCACGCGCTGGGGAGGGATGGAA------GTGGGG----------------CTCTCCCAAATGGAGCCTTGAACCAGGAGTTCTCTTACTGGAACCATCAACCTCAATACGG-C-CCCAGACCTTTCTGGAGAAGGCGGGGGTGGAGA------GAATAA-----AGAGCTCTTTTGCGCAGCCGCAGAACAGT-AGGGGAAAGGGG-TAGTAGAGATGTTGCAGATTGCGATGA-CTGGGATGACAGTTTGTATCCAGACTTTGACTGAA--AAGGTACAGGTG-CAGCTTTCTCTAAACTA
s panTro5.chr6             30745764 1773 + 175400573 TCCCCAGAGGTGCAGCGGGCACACCCCTCCTTCC-AGATGTGCGGAAGCCCGAGCCCCGCCCCCTCCTCCCGCT-------CCCGCACTGACCtctcttccgctcccgtttgtcctgcaactgcttcttcttctgcttcACGCTGAATGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCCGCCCTCCGCCGAGCT-CCCGCCGCCTCAACTGACTG-------CCCCCCGGGGCAGCCCCCGCCGCAGGGGCCCGGGACCCTAGAGGAGGCGGGGCTAGCAGGTGACGTCAGCGGGCGGGCCCGACAGAATTACCGCCGCGGCGGCGATGGAAGGCGGACGGGGGAGAT--ATAGTCACTTCCCTCCAGGAGCGAGGCGAGAGGATGATGCGGGGTGGGCTACTGGCACGTGAGAGCCAGTGGCACCGAGAGGGCGCCCCG-GCGGCGAAGAAGGAGGCGCGCGTGGGAGGACCAGGCTAACTCCGTCACGGACGCTACCAACTCGCGTTCGGAGGA-GGGGGGGCGCGTGTCATCACTACCTCGCGCTCCCGGGAGAAGCTACCACTCACCTGGAGGGGGCGGCGGAGCGGAGGGCGGGGCCTACTACCTAGTGGAGA-GGGGGCGTGGACACGCTGAGGCTATACTACCAA-GCCCC------GGGCTTGACCTTAGT-GGAAAGCCGAGAC--TGCGT-------------CCAGGTTGCTGGACTACACCGGGGGCACGGTCAGAGGTCTTTAGGGGAGGGCGGCGGTCTG-AGAGTCCTGGGTGCCGACCTGTTGGGACCGAAATTCTTTGTGGGAACGATGATAAGGAGCAGGTTTACAGATCGT-AAGTGCAAAAGCGGGCGAGAAGGGAAACCCAAGCGGGACAAGGACTTTTGGGGGGAGGTCAAAGGGCACGAAGTTGTGCCTGCAGCTGTTACCATAGTAACCGAGGACCGGATGTGGCGATCTTACGGTGCGACAGTC--CTCTTCTCAGGCCCTCTG-GCCCGAGGGCCTGTTGACTCTGTGACACACTCTGAGGAGCTGGTTGTGG----------TGTTTTCCAGCGAGGGAAGAAGAGAGTAA-TTTT---------TTCAAAGCATTTATAGAAACGCAGCAAAGGGAAGGTGTGAGGTT-GCCGCCATGCCTGGCAGAGACGGAGGGAGGCAGTTTGCTCCGGAATGCGGCCGCCGCAGATGTTCTCCGCAACCTTCCGGAAGTGGAATGGCGGGAGCCTCAGCATTGCTGCCCACCGACC---CCCCGGAAGCGGAAACAGAAT-CCCCGCGTGCCCCTTCCTCACTACCCTCCAAATCCCGCTGCAGCCATTGCCGCAGACACGATGCCGAAACGAAAGAAGCAGAATCAGCACCA---GCCACCGACACAGCAGCAG------CCCCCACTGCCCGAGCGGGAAGAGACTGGAGATGAGGAGGATGGGAGTCCCATCGGTGAGGGGTCTGGGAGGGATGTGCACATGCCTGTCAAGCCCGTCCGGGCAAGGGGCTAGGGGCTAA-TAAGGTGCGAAGGA--GGGGGCTGTAACGGAAGGAGGAAGGGCGCACGCGCTGGGGAGGGATGGAA------GTGGGG----------------CTGTCCCAAATGGAGCCTTGAACCAGGAGTTCTCTTACTGGAACCATCAACCTCAATACGG-C-CCCAGACCTTTCTGGAGAAGGCGGGGGTGGAGA------GAATAA-----AGAGCTCTTTTGCGCAGCCGCAGAACAGT-AGGGGAAAGGGG-TAGTAGAGATGTTGCAGATTGCGATGA-CTGGGATGACAGTTTGTATCCAGACTTTGACTGAA--AAGGTACAGGTG-CAGCTTTCTCTGAACTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31169393 1773 + 173848474 TCCCCAGAGGTGCAGCGGGCACACCCCTCCTTCC-AGATGTGCGGAAGCCCGAGCCCCGCCCCCTCCTCCCGCT-------CCCGCACTGACCtctcttccgctcccgtttgtcctgcaactgcttcttcttctgcttcACGCTGAATGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCCGCCCTCCGCCGAGCT-CCCGCCGCCTCAACTGACTG-------CCCCCCGGGGCAGCCCCCGCCGCAGGGGCCCGGGACCCTAGAGGAGGCGGGGCTAGCAGGTGACGTCAGCGGGCGGGCCCGACAGAATTACCGCCGCGGCGGCGATGGAAGGCGGACGGGGGAGAT--ATAGTCACTTCCCTCCAGGAGCGAGGCGAGAGGATGATGCGGGGTGGGCTACTGGCACGTGAGAGCCAGTGGCACCGAGAGGGCGCCCCG-GCGGCGAAGAAGGAGGCGCGCGTGGGAGGACCAGGCTAACTCCGTCACGGACGCTACCAACTCGCGTTCGGAGGA-GGGGGGGCGCGTGTCATCACTACCTTGCGCTCCCGGGAGAAGCTACCACTCACCTGGAGGGGGCGGCGGAGCGGAGGGCGGGGCCTACTACCTAGTGGAGA-GGGGGCGTGGACACGCTGAGGCTATACTACCAA-GCCCC------GGGCTTGACCTTAGT-GGAAAGCCGAGAC--TGCGT-------------CCAGGTTGCTGGACTACACCGGGGGCACGGTCAGAGGTCTTTAGGGGAGGGCGGCGGTCTG-AGAGTCCTGGGTGCCGACCTGTTGGGACCGAAATTCTTTGTGGGAACGATGATAAGGAGCAGGTTTACAGATCGT-AAGTGCAAAAGCGGGCGAGAAGGGAAACCCAAGCGGGACAAGGACTTTTGGGGGGAGGTCAAAGGGCACGAAGTTGTGCCTGCAGCTGTTACCATAGTAACCGAGGACCGGATGTGGCGATCTTACGGTGCGACAGTC--CTCTTCTCAGGCTCTCTG-GCCCGAGAGCCTGTTGACTCTGTGACACACTCTGAGGAGCTGGTTGTGG----------TGTTTTCCAGCGAGGGAAGAAGAGAGTAA-TTTT---------TTCAAAGCATTTATAGAAACGCAGCAAAGGGAAGGTGTGAGGTT-GCCGCCATGCCTGGCAGAGACGGAGGGAGGCAGTTTGCTCCGGAATGCGGCCGCCGCAGATGTTCTCCGCAACCTTCCGGAAGTGGAATGGCGGGAGCCTCAGCATTGCTGCCCACCGACC---CCCCGGAAGCGGAAACAGAAT-CCCCGCGTGCCCCTTCCTCACTACCCTCCAAATCCCGCTGCAGCCATTGCCGCAGACACGATGCCGAAACGAAAGAAGCAGAATCAGCACCA---GCCACCGACACAGCAGCAG------CCCCCACTGCCCGAGCGGGAAGAGACTGGAGATGAGGAGGATGGGAGTCCCATCGGTGAGGGGTCTGGGAGGGATGTGCACATGCCTGTCAAGCCCGTCCGGGCAAGGGGCTAGGGGCTAA-TAAGGTGCGAAGGA--GGGGGCTGTAACGGAAGGAGGAAGGGCGCACGCGCTGGGGAGGGATGGAA------GTGGGG----------------CTGTCCCAAATGGAGCCTTGAACCAGGAGTTCTCTTACTGGAACCATCAACCTCAATACGG-C-CCCAGACCTTTCTGGAGAAGGCGGGGGTGGAGA------GAATAA-----AGAGCTCTTTTGCGCAGCCGCAGAACAGT-AGGGGAAAGGGG-TAGTAGAGATGTTGCAGATTGCGATGA-CTGGGATGACAGTTTGTATCCAGACTTTGACTGAA--AAGGTACAGGTG-CAGCTTTCTCTGAACTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     676386 1769 +   2037526 TCCCCAGAGGTGCAGCGGGCACACCCCTCCTTCC-AGATGTGCGGAAGCCCGAGCCCCGCCCCCTCCTCCCGCT-------CCCGCACTGACCtctcttccgctcccgtttgtcctgcaactgcttcttcttctgcttcACGCTGAATGGCTTCTTCCTCGGCATTGCCCGGACCAGTCACCTGGCCCGCCCTCCGCCGAGCT-CCCGCCGCCTCAACTGACTG-------CCCCCCGGGGCAGCCCCCGCCGCAGGGGCCCGGGACCCTAGAGGAGGCGGGGCTAGCAGGTGACGTCAGCGGGCGGGCCCGACAGAATTACCGCCGCGGCGGCGATGGAAGGCGGACGGGGGAGAT--ATAGTCACTTCCCTCCAGGAGCGAGGCGAGAGGATGATGCGGGGTGGGCTACTGGCACGTGAGAGCCAGTGGCACCGAGAGGGCGCCCCG-GCGGCGAGGAAGGAGGCGCGCGTGGGAGGACCAGGCTAACTCCGTCACGGACGCTACCAACTCGCGTTCGGAGGA-GGGGGGGCGCGTGTCATCACTACCTTGCGCTCCCGGGAGAAGCTACCACTCACCTGGAGGGGGCGGCGGAGCGGAGGGCGGGGCCTACTACCTAGGGGAGA-GGGGGCGTGGACACGCTGAGGCTATACTACCAA-GCCCC------GGGCTTGACCTTAGT-GGAAAGCCGAGACTGTGCGT-------------CCAGGTTGCTGGACTACACCCGGGGCACGGTCAGAGGTCTTTAGGGGAGGGCGGCGGTCTG-AGAGTCCTGGGTGCCGACCTGTTGGGACCCAAATTCCTTGTGGGAACGATGATAAGGAGCAGGTTTACAGATCAT-AAGTGCAAAAGCGGGCGAGAAGGGAAACCCAAGCGGGACACGGACTTTT-GGGGGAGGTCAAAGGGCACGAAGTTGTGCCTGCAGCTGTTACCATAGTAACCGAGGACCGGATGTGGCGATCTTACGGTGCGACAGTC-------CTCAGGCCCTCTG-GCCCGAGAGCCTGTTGACTCTGTGACACACTCTGACGAGCTGGTTGTGG----------TGTTTTCCAGCGAGGGAAGAAGAGAGTAA-TTTT---------TTCAAAGCATTTATAGAAACGCAGCAAAGGGAAGGTGTGAGGTT-GCCGCCATGCCTGGCAGAGACGGAGGGAGGCAGTTTGCTCCGGAATGCGGCCGCCGCAGATGTTCTCCGCAACCTTCCGGAAGTGGAATGGCGGGAGCCTCAGCATTGCTGCCCACCGACC---CCCCGGAAGCGGAAACAGAAT-CCCCGCGTGCCCCTTCCTCACTACCCTCCAAATCCCGCTGCAGCCATTGCCGCAGACACGATGCCGAAACGAAAGAAGCAGAATCAGCACCA---GCCACCGACACAGCAGCAG------CCCCCACTGCCCGAGCGGGAAGAGACTGGAGATGAGGAGGATGGGAGTCCCATCGGTGAGGGGTCTGGGAGGGATGTGCACATGCCTGTCAAGCCCGTCCGGGCAAGGGGCTAGGGGCTAA-TAAGGTGCGAAGGA--GGGGGCTGTAACGGAAGGAGGAAGGGCGCACGCGCTGGGGAGGGATGGAA------GTGGGG----------------CTGTCCCAAATGGAGCCTTGAACCAGGAGTTCTCTTACTGGAACCATCAACCTCAATACGG-C-CCCAGACCTTTCTGGAGAAGGCGGGGGTGGAGA------GAATAA-----AGAGCTCTTTTGCGCAGCCGCAGAACAGT-AGGGGAAAGGGG-TAGTAGAGATGTTGCAGATTGCGATGA-CTGGGATGACAGTTTGTATCCAGACTTTGACTGAA--AAGGTACAGGTG-CAGCTTTCTCTAAACTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75344994 1790 + 122973662 CCCACAGAGATGCAGCGGGCACACCCCTCCTTCC-AGATGTGCGGAAGCCCGAGCCCCGCCCCCTCCTCCCGCT-------CCCGCACTGACCTCTCTTCCTCTCCCGTTTGTCCTGCAACTGCTTCTTCTTCTGCTTCACGCTGAAGGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCCGCCCTCCGCCGAGCT-CCCGCCGCCTCAACTGACTGC------CCCCCCGGGGCAGCCCCCGCCGCAGGGGCCCGGGACCCTAGAGGAGGCGGGGCTAGCAGGTGACGTCAGCGGGCGGGCCCGACAGAATTGCCGCCGCGGCGGCGATGGAAGGCGGACGGGGGAGAT--ATAGTCACTTGCCTCCAGGAGCGAGGCGAGAGGATGATGCGGGGTGGGCTTCTGGCACGTGAGAGCCAGTGGCACCGAGAGGGCGCCCCG-GCGGCGAGGAAGGAGGCGCGCGTGGGAGGACCAGGCTAACTCCGTCACGGACGCTACCAACTCGCGTTCGGAGGA-GGGGGGGCGCGTGTCATCACTACCTTGCGCTCCCGGGAGAAGCTACCACTCACCTGGAGGGGGCGGCGGAGTGGAGGGCGGGGCCTACTACCTAGGGGAGA-GGGGGCGTGGACACGCTGAGGCTACACTACCAA-GCCCC------GGGCTTGACCTTAGT-GGAAAGCCGAGACTGTGCGTCCCGGCAATGAAGCCAGGTTGCTGGACTACACCGGGGGCACGGTCAGAGGTCTTTAGGGGAGGGCGGCGGTCTG-AGAGCCCTGGGTGCCGACCTGTTGGGACCCAAATTCCTTGTGGGAACGATGATAAGGAGCAGGTTTACAGATCATCAAGTGCAAAAGCGGGCGAGAAGGGAAACCCAGGCGGGACCACGACTTTTGGAGGGAGGTCAAAGAGCACGAAGTTGTGCCTGCAGCTGTTACCACAGTAACCGAGGACCGGATGTGGCGATCTTACGGTGCGACAGTC--CTCTTCTCAGGCCCTCTG-GCCCAAGAGCCTGTTGACTCTGTGACACACTCTGAGGAGCTGATTGTGG----------TGTTTTCCAACGAGGGACGAAGAGAGTAA-TTTT---------TTCAAAGCATTTATAGAAACGCAGCAAAGGGAAGGTGTGAGGTT-GCCGTCATGCCTGGTAGAGACGGAGGGAGGCAGTTTACTCCGGAATGCGGCCGCCGCAGATGTTCTCCGCAACCTTCCGGAAGTGGAATGGCGGGAGCCTCAGCATTGCTGCCCACCGACC---CCCCGGAAGCGGAAACAGAAT-CCCCGCGTGCCCCTTCCTCACTACCCTCCAAATCCCGCTGCAGCCATTGCCGCAGACACGATGCCGAAACGAAAGAAGCAGAATCAGCACCA---GCCACCGACACAGCAGCAG------CCCCCACTGCCTGAGCGGGAAGAGACTGGAGATGAGGAGGATGGGAGTCCCATCGGTGAGGGGTCTGGGAGGGATGTGCACATACCTGTCAAGCCCGTCCGGGCGAGGGGCTAGGGGCTAA-TAAGGTGCGAAGGA--GGGGGCTGTAACGGAAGGAGGAAGGGCGCACGCGCTGGGAAGGGATGGAA------GTGGGG----------------CTGTCCCAAATGGAGCCTTGAACCAGGAGTTCTCTTACTGGAACCATCAACCTCAATACGG-C-CCCAAACCTTTCTGGAGAAGGCGGGGGTGGAGA------GAATAA-----AGAGCTCTTTTGCGCAGCCGCAGAACAGT-AGGGGAAAGGGG-CAGTAGAGATGTTGCAGATTGCGATGA-CTGGGATGACAGTTTGTATCCAGACTTTGGCTGAA--AAGGTACAGGTG-CAGCTTTCTCTAAACTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31256472 1790 + 172585720 CCCCCAGAGGTGCAGCGGGCACACCCCTCCTTCC-AGCTGTGCGGAAGCCCGAGCCCCGCCTCCTCCTCCAGCT-------CCCGCACTGACCtctcttccgctcccgtttgtcctgcaactgcttcttcttctgcttcACGCTGAAGGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCCGCCCTCCGCCGAGCT-CCTGCCGCCTCAACTGACTG-------CCCCCCGGGGCAGTCCCCGCCGCAGGGGCCCGGGACCCTAGAGGAGGCGGAGCTAGCAGGTGACGTCAGCGGGCGGGCCCGACCGAATTGCCGCCGCGGCGGCGATGGAAGGCGGACAGGGGAGATACACAGTCACTTCCCTCCAGGAGCGAGGCGAAAGGATGATGCGGGGTGGGCTACTGGCACGTGAGAGCCAGTGGCACGGAGAGAGCACCCCG-GCGGCGAGGAAGGAGGCGCGCGTGGGAGGACCAGGCTAACTCCGTCACGGACGCTACCAACTCGCGTTCGGAGGAGGGGGGAGCGCGTGTCATCACTACCTTGCGCTCCTGGGAGAAGCTACCACTCACCTGGAGGGGGCGGCGGAGCGGAGGGC-GGGCCTATTACCTAGGGGAGA-GGAGGAGTGGACAGGCTGAGGCTACACTCCCAA-CCCCC------AGGCTTGACCTTAGT-GGAAAGCCGAGACGGTGCGTCCCGGGAATGAAGCCAGGTTGCTGGGCTACACCGGGGGCACGGTCAGAGGTCTTTAGGGGAGGGCGGCGGTCTGAAGAGTCCTGGCTGCCGACCTGCTGGGACCCAAGTTCCTTGTGGGAACGATGATAAGGAGCAGGTTTACAGATCAG-AAGTGCAAAAGCGGGCGAGAAGCGAAACCCAGGCGGGACAAGGGCTTTTGGAGGGAGGTCAAAGGGCACAAAGTTGTGCCTGCAGCTGTTACCATAGTAACCGAGGACCGGATGTGGCGATCTTACGGTGCGACAGTC--CTCTTCTCAGGCCTTCTG-GCCCGAGAGCCTGTTGACTCTGTGACACACTCTGAGGAGCTGGTTGTGG----------TGTTTTCCAGCGAGGGAAGAAGAGCGGAA-TTTT---------TTCAAAGCATTTATAGAAACGCAGCAAAAGGAAGGTGTGAGGTTGGCCGCCATGCCTGGCAGAGACGGAGAGAGGCAGTTTACTCCAGAATGCGGCCGCCACAGATGTTCTCCGCAATCTTCCGGAAGTGGAATGGTGGGAGCTTGGGCATTGCTGCCCACCGACC---CCCCGGAAGCGGAAACAGAAT-CCCCGCGTGCCCCTTCCTCACTACCCTCCAAATCCCGCTGCAGCCATTGCCGCAGCCACGATGCCGAAACGAAAGAAGCAGAATCAGCACCA---GCCACCGACACAGCAGCAA------CCCCCACTGCCCGAGCGGGAAGAGACTGGAGATGAGGAGGATGGGAGTCCCATCGGTGAGGGGTCAGGGAGGGATGTGCACATGCCTGTCAAGCCCGTCCGGGCGAAGGGCTAGGGGCTAA-TAAGGTGCGAAGGA--AGGGGCTCTAACGGAAGGAGGAAGGGCGCACGCGCTGGGTAGGGATGGCA------GCAGGG----------------CTGTCCCAAATGGAGCCTTGAACCAGGAGTTCTCTTACTGGAACCGTCAACCTCAATACGG-C-CCCAAACCTTTCTG--GAACGCGGGGGTGGAGA------GAGTAA-----AGAGCTCTTTTGCGCAGCCGCAGAACAGT-AGGGGAAAGGGG-CAGTAGAGATGTTGCAGATTGCGATGA-CTGGGTTGACAGTTTGTATCCGGATTTTGATTGAA--AAGGTACAGGTG-CCGCTTTCTCTATACTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30545480 1790 - 170955103 CCCCCAGAGGTGCAGCGGGCACACCCCTCCTTCC-AGCTGTGCGGAAGCCCGAGCCCCGCCTCCTCCTCCAGCT-------CCCGCACTGACCtctcttccgctcccgtttgtcctgcaactgcttcttcttctgcttcACGCTAAAGGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCCGCCCTCCGCCGAGCT-CCTGCCGCCTCAACTGACTG-------CCCCCCGGGGCAGTCCCCGCCGCAGGGGCCCGGGACCCTAGAGGAGGCGGAGCTAGCAGGTGACGTCAGCGGGCGGGCCCGACCGAATTGCCGCCGCGGCGGCGATGGAAGGCGGACAGGGGAGATACACAGTCACTTCCCTCCAGGAGCGAGGCGAAAGGATGATGCGGGGTGGGCTACTGGCACGTGAGAGCCAGTAGCACCGAGAGAGCACCCCG-GCGGCGAGGAAGGAGGCGCGCGTGGGAGGACCAGGCTAACTCCGTCACGGACGCTACCAACTCGCGTTCGGAGGAGGGGGGAGCGCGTGTCATCACTACCTTGCGCTCCCGGGAGAAGCTACCACTCACCTGGAGGGGGCGGCGGAGCGGAGGGCGGGGCCTATTACCTAGGGGAGA-GGAGGAGTGGACACGCTGAGGCTACACTCCCAA-CCCCC------AGGCTTGACCTTAGT-GGAAAGCCGAGACGGTGCGTCCCGGGAATGAAGCCAGGTTGCTGGGCTACACCGGGGGCACGGTCAGAGGTCTTTAGGGGAGGGCGGCGGTCTGAAGAGTCCTGGCTGCCGACCTGCTGGGACCCAAATTCCTTGTGGGAACGATGATAAGGAGCAGGTTTACAGATCAG-AAGTGCAAAAGCGGGCGAGAAGCGAAACCCAGGCGGGACAAGGGCTTTTGGAGGGAGGTCAAAGGGCACAAAGTTGTGCCTGCAGCTGTTACCATAGTAACCGAGGACCGGATGTGGCGATCTTACGGTGCGACAGTC--CTCTTCTCAGGCCTTCTG-GCCCGAGAGCCTGTTGACTCTGTGACACACTCTGAGGAGCTGGTTGTGG----------TGTTTTCCAGCGAGGGAAGAAGAGCGGAA-TTTT---------TTCAAAGCATTTATAGAAACGCAGCAAAAGGAAGGTGTGAGGTT-GCCGCCATGCCTGGCAGAGACGGAGAGAGGCAGTTTACTCCAGAATGCGGCCGCCACAGATGTTCTCCGCAACCTTCCGGAAGTGGAATGGTGGGAGCTTGGGCATTGCTGCCCACCGACC---CCCCGGAAGCGGAAACAGAAT-CCCCGCGTGCCCCTTCCTCACTACCCTCCAAATCCCGCTGCAGCCATTGCCGCAGCCACGATGCCGAAACGAAAGAAGCAGAATCAGCACCA---GCCACCGACACAGCAGCAA------CCCCCACTGCCCGAGCGGGAAGAGACTGGAGATGAGGAGGATGGGAGTCCCATCGGTGAGGGGTCAGGGAGGGATGTGCACTTGCCTGTCAAGCCCGTCCGGGCGAAGGGCTAGGGGCTAA-TAAGGTGCGAAGGA--AGGGGCTCTAACGGAAGGAGGAAGGGCGCACGCGCTGGGTAGGGATGGCA------GCAGGG----------------CTGTCCCAAATGGAGCCTTGAACCAGGAGTTCTCTTACTGGAACCGTCAACCTCAATACGG-C-CCCAAACCTTTCTG--GAACGCGGGGGTGGAGA------GAGTAA-----AGAGCTCTTTTGCGCAGCCGCAGAACAGT-AGGGGAAAGGGG-CAGTAGAGATGTTGCAGATTGCGATGA-CTGGGTTGACAGTTTGTATCCGGATTTTGATTGAA--AAGGTACAGGTG-CCGCTTTCTCTAAACTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     841764 1789 +   1495729 CCCCCAGAGGTGCAGCGGGCACACCCCTCCTTCC-AGCTGTGCGGAAGCCCGAGCCCCGCCTCCTCCTCCAGCT-------CCCGCACTGACCtctcttccgctcccgtttgtcctgcaactgcttcttcttctgcttcACGCTGAAGGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCCGCCCTCCGCCGAGCT-CCTGCCGCCTCAACTGACTG-------CCCCCCGGGGCAGTCCCCGCCGCAGGGGCCCGGGACCCTAGAGGAGGCGGAGCTAGCAGGTGACGTCAGCGGGCGGGCCCGACCGAATTGCCGCCGCGGCGGCGATGGAAGGCGGACAGGGGAGATACACAGTCACTTCCCTCCAGGAGCGAGGCGAAAGGATGATGCGGGGTGGGCTACTGGCACGTGAGAGCCAGTGGCACGGAGAGAGCACCCCG-GCGGCGAGGAAGGAGGCGCGCGTGGGAGGACCAGGCTAACTCCGTCACGGACGCTACCAACTCGCGTTCGGAGGAGGGGGGAGCGCGTGTCATCACTACCTTGCGCTCCTGGGAGAAGCTACCACTCACCTGGAGGGGGCGGCGGAGCGGAGGGC-GGGCCTATTACCTAGGGGAGA-GGAGGAGTGGACACGTTGAGGCTACACTCCCAA-CCCCC------AGGCTTGACCTTAGT-GGAAAGCCGAGACGGTGCGTCCCGGGAATGAAGCCAAGTTGCTGGGCTACACCGGGGGCACGGTCAGAGGTCTTTAGGGGAGGGCGGCGGTCTGAAGAGTCCTGGCTGCCGACCTGCTGGGACCCAAGTTCCTTGTGGGAACGATGATAAGGAGCAGGTTTACAGATCAG-AAGTGCAAAAGCGGGCGAGAAGCGAAACCCAGGCGGGACAAGGGCTTTTGGAGGGAGGTCAAAGGGCACAAAGTTGTGCCTGCAGCTGTTACCATAGTAACCGAGGACCGGATGTGGCGATCTTACGGTGCGACAGTC--CTCTTCTCAGGCCTTCTG-GCCCGAGAGCCTGTTGACTCTGTGACACACTCTGAGGAGCTGGTTGTGG----------TGTTTTCCAGCGAGGGAAGAAGAGCGGAA-TTTT---------TTCAAAGCATTTATAGAAACGCAGCAAAGGGAAGGTGTGAGGTT-GCCGCCATGCCTGGCAGAGACGGAGAGAGGCAGTTTACTCCAGAATGCGGCCGCCACAGATGTTCTCCGCAATCTTCCGGAAGTGGAATGGTGGGAGCTTGGGCATTGCTGCCCACCGACC---CCCCGGAAGCGGAAACAGAAT-CCCCGCGTGCCCCTTCCTCACTACCCTCCAAATCCCGCTGCAGCCATTGCCGCAGCCACGATGCCGAAACGAAAGAAGCAGAATCAGCACCA---GCCACCGACACAGCAGCAA------CCCCCACTGCCCGAGCGGGAAGAGACTGGAGATGAGGAGGATGGGAGTCCCATCGGTGAGGGGTCAGGGAGGGATGTGCACATGCCTGTCAAGCCCGTCCGGGCGAAGGGTTAGGGGCTAA-TAAGGTGCGAAGGA--AGGGGCTCTAACGGAAGGAGGAAGGGCGCACGCGCTGGGTAGGGATGGCA------GCAGGG----------------CTGTCCCAAATGGAGCCTTGAACCAGGAGTTCTCTTACTGGAACCGTCAACCTCAATACGG-C-CCCAAACCTTTCTG--GAACGCGGGGGTGGAGA------GAGTAA-----AGAGCTCTTTTGCGCAGCCGCAGAACAGT-AGGAGAAAGGGG-CAGTAGAGATGTTGCAGATTGCGATGA-CTGGGTTGACAGTTTGTATCCGGATTTTGACTGAA--AAGGTACAGGTG-CCGCTTTCTCTATACTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      64900 1792 -    811324 CCCCCAGAGGTGCAGCGGGCACACCCCTCCTTCC-AGCTGTGCAGAAGCCCGAGCCCCGCCTCCTCCTCCAGCT-------CCCGCACTGACCtctcttccgctcccgtttgtcctgcaactgcttcttcttctgcttcACGCTGAAGGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCCGCCCTCCGCCGAGCT-CCTGCCGCCTCAACTGACTG-------CCCCCCGGGGCAGTCCCCGCCGCAGGGGCCCGGGACCCTAGAGGAGGCGGAGCTAGCAGGTGACGTCAGCGGGCGGGCCCGACCGAATTGCCGCCGCGGCGGCGATGGAAGGCGGACAGGGGAGATACACAGTCACTTCCCTCCAGGAGCGAGGCGAAAGGATGATGCGGGGTGGGCTACTGGCACGTGAGAGCCAGTGGCACCGAGAGAGCACCCCG-GCGGCGAGGAAGGAGGCGCGCGTGGGAGGACCAGGCTAACTCCGTCACGGACGCTACCAACTCGCGTTCGGAGGAGGGGGGAGCGCGTGTCATCACTACCTTGCGCTCCCGGGAGAAGCTACCACTCACCTGGAGGGGGCGGCGGAGCGGAGGGCGGGGCCTACTACCTAGGGGAGA-GGAGGAGTGGACACGTTGAGGCTACGCTCCCAA-CCCCC------GGGCTTGACCTTAGT-GGAAAGCCGAGACTGTGCGTCCCGGGAATGAAGCCAGGTTGCTGGGCTACACCGGGGGCACGGTCAGAGGTCTTTAGGGGAGGGCGGCGGTCTGAAGAGTCCTGGCTGCCGACCTGCTGGGACCCAAATTCCTTGTGGGAACGATGATAAGAAGCAGGTTTACAGATCAG-AAGTGCAAAAGCGGGCGAGAAGCGAAACCCAGGCGGGACAAGGGCTTTTGGAGGGAGGTCAAAGGGCACAAAGTTGTGCCTGCAGCTGTTACCATAGTAACCGAGGACCGGATGTGGCGATCTTACGGTGCGACAGTC--CTCTTCTCAGGCCTTCTG-GCCCGAGAGCCTGTTGACTCTGTGACACACTCTGAGGAGCTGGTTGTGG----------TGTTTTCCAGCGAGCGAAGAAGAGAGGAA-TTTT---------TTCAAAGCATTTATAGAAACGCAGCAAAGGGAAGGTGTGAGGTT-GCCGCCATGCCTGGCAGAGACGGAGAGAAGCAGTTTACTCCAGAATGCGGCCGCCACAGATGTTCTCCGCAACCTTCCGGAAGTGGAATGGTGGGAGCTTCGGCATTGCTGCCTACCGACC---CCCCGGAAGCGGAAACAGAAT-CCCCGCGTGCCCCTTCCTCACTACCCTCTAAATCCCGCTGCAGCCATTGCCGCAGCCACGATGCCGAAACGAAAGAAGCAGAATCAGCACCA---GCCACCGACACAGCAGCAA------CCCCCACTGCCTGAGCGGGAAGAGACTGGAGATGAGGAGGATGGGAGTCCCATCGGTGAGGGGTCAGGGAGGGATGTGCACATGCCTGTCAAGCCCGTCCGGGCGAAGGGCTAGGGGCTAA-TAAGGTGCGAAGGA--AGGGGCTCTAACGGAAGGAGGAAGGGCGCACGCGCTGGGTAGGGATGGCA------GCAGGG----------------CTGTCTCAAATGGAGCCTTGAACCAGGAGTTCTCTTACTGGAACCGTCAACCTCAATACGG-C-CCCAAACCTTTCTGGAGAAGGCGGGGGTGGAGA------GAGTAA-----AGAGCTCTTTTGCGCAGCCGCAGAACAGT-AGGGGAAAGGGG-CAGTAGAGATGTTGCAGATTGCGATGA-CTGGGTTGACAGTTTGTATCCGGATTTTGACTGAA--AAGGTACAGGTG-CCGCTTTCTCTAAACTA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30095419 1790 -  71996105 CCCCCAGAGGTGCAGCGGGCACACCCCTCCTTCC-AGCTGTGCGGAAGCCCGAGCCCCGCCTCCTCCTCCAGCT-------CCCGCACTGACCtctcttccgctcccgtttgtcctgcaactgcttcttcttctgcttcACGCTGAAGGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCCGCCCTCCGCCGAGCT-CCTGCCGCCTCAACTGACTG-------CCCCCCGGGGCAGTCCCCGCCGCAGGGGCCCGGGACCCTAGAGGAGGCGGAGCTAGTAGGTGACGTCAGCGGGCGGGCCCGACCGAATTGCCGCCGCGGCGGCGATGGAAGGCGGACAGGGAAGATACACAGTCACTTCCCTCCAGGAGCGAGGCGAAAGGATGATGCGGGGTGGGCTACTGGCACGTGAGAGCCAGTGGCACCGAGAGAACACCCCG-GCGGCGAGGAAGGAGGCGCGCGTGGGAGGACCAGGCTAACTCCGTCACGGACGCTACCAACTCGCGTTCGGAGGAGGGGGGAGCGCGTGTCATCACTACCTTGCGCTCCCGGGAGAAGCTACCACTCACCTGGAGGGGGCGGCGGAGCGGAGGGCGGGGCCTACTACCTAGGGGAGA-GGAGGAGTGGACACGCTGAGGCTACACTCCCAA-CCCCC------GGGCTTGACCTTAGT-GGAAAGCCGAGACTGTGCGTCCCGGGAATGAAGCCAGGTTGCTGGGCTACACCAGGGGCACGGTCAGAGGTCTTTAGGGGAGGGCGGCGGTCTGAAGAGTCCTGGCTGCCGACCTGCTGGGACCCAAATTCCTTGTGGGAACGATGATAAGGAGCAGGTTTACAGATCAG-AAGTGCAAAAGCGGGCGAGAAGGGAAACCCAGGCGGGACAAGGGCTTTTGGAGGGAGGTCAAAGGGCACAGAGTTGTGCCTGCAGCTGTTACCATAGTAACCGAGGACCGGATGTGGCGATCTTACGGTGCGACAGTC--CTCTTCTCAGGCCTTCTG-GCCCGAGAGCCTGTTGACTC--TGACACACTCTGAGGAGCTGGTTGTGG----------TGTTTTCCAGCGAGGGAAGAAGAGAGGAA-TTTT---------TTCAAAGCATTTATAGAAACGCAGCAAAGGGAAGGTGTGAGGTT-GCCGCCATGCCTGGCAGAGACGGAGAGAGGCAGTTTACTCCAGAATGCGGCCGCCACAGATGTTCTCCGCAACCTTCCGGAAGTGGAATGGTGGGAGCTTCGGCATTGCTGCCCACCGACC---CCCCGGAAGCGGAAACAGAAT-CCCCGCGTGCCCCTTCCTCACTACCCTCCAAATCCCGCTGCAGCCATTGCCGCAGCCACGATGCCGAAACGAAAGAAGCAGAATCAGCACCA---GCCACCGACACAGCAGCAA------CCCCCACTGCCCGAGCGGGAAGAGACTGGAGATGAGGAGGATGGGAGTTCCATCGGTGAGGGGTCAGGGAGGGATGTGCACATGCCTGTCAAGCCCGCCCGGGCGAAGGGCTAGGGGCTAA-TAAGGTGCGAAGGA--GGGGGCTCTAACGGAAGGAGGAAGGGCGCACGCGCTGGGTAGGGGTGGCA------GCAGGG----------------CTGTCCCAAATGGAGCCTTGAACCAGGAGTTCTCTTCCTGGAACCGTCAACCTCAATACGG-C-CCCAAACCTTTCTGGAGAAGGAGGGGGTGGAGA------GAGTAA-----AGAGCTCTTTTGCGCAGCCGCAGAACAGT-AGGGGAAAGGGG-CAGTAGAGATGTTGCAGATTGCGATGA-CTGGGTTGACAGTTTGTATCCGGATTTTGACTGAA--AAGGTACAGGTG-CCGCTTTCTCTAAACTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     102211 1792 +    779361 CCCCCAGAGGTGCAGCGGGCACACCCCTCCTTCC-AGCTGTGCGGAAGCCCGAGCCCCGCCTCCTCCTCCAGCT-------CCCGCACTGACCtctcttccgctcccgtttgtcctgcaactgcttcttcttctgcttcACGCTGAAGGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCCGCCCTCCGCCGAGCT-CCTGCCGCCTCAACTGACTG-------CCCCCCGGGGCAGTCCCCGCCGCAGGGGCCCGGGACCCTAGAGGAGGCGGAGCTAGCAGGTGACGTCAGCGGGCGGGCCCGACCGAATTGCCGCCGCGGCGGCGATGGAAGGCGGACAGGGGAGATACACAGTCACTTCCCTCCAGGAGCGAGGCGAAAGGATGATGCGGGGTGGGCTACTGGCACGTGAGAGCCAGTGGCACCGAGAGAGCACCCCG-GCGGCGAGGAAGGAGGCGCGCGTGGGAGGACCAGGCTAACTCCGTCACGGACGCTACCAACTCGCGTTCGGAGGAGGGGGGAGCGCGTGTCATCACTACCTTGCGCTCCCGGGAGAAGCTACCACTCACCTGGAGGGGGCGGCGGAGCGGAGGGCGGGGCCTACTACCTAGGGGAGA-GGAGGAGTGGACACGTTGAGGCTACACTCCCAA-CCCCC------GGGCTTGACCTTAGT-GGAAAGCCGAGACTGTGCGTCCCGGAAATGAAGCCAGGTTGCTGGGCTACACCGGGGGCACGGTCAGAGGTCTTTAGGGGAGGGCGGCGGTCTGAAGAGTCCTGGCTGCCGACCTGCTGGGACCCAAATTCCTTGTGGGAACGATGATAAGGAGCAGGTTTACAGATCAG-AAGTGCAAAAGCGGGCGAGAAGCGAAACCCAGGCGGGACAAGGGCTTTTGGAGGGAGGTCAAAGGGCACAAAGTTGTGCCTGCAGCTGTTACCATAGTAACCGAGGACCGGATGTGGCGATCTTACGGTGCGACAGTC--CTCTTCTCAGGCCTTCTG-GCCCGAGAGCCTGTTGACTCTGTGACACACTCTGAGGAGCTGGTTGTGG----------TGTTTTCCAGCGAGCGAAGAAGAGAGGAA-TTTT---------TTCAAAGCATTTATAGAAACGCAGCAAAGGGAAGGTGTGAGGTT-GCCGCCATGCCTGGCAGAGACAGAGAGAAGCAGTTTACTCCAGAATGCGGCCGCCACAGATGTTCTCCGCAACCTTCCGGAAGTGGAATGGTGGGAGCTTCGGCATTGCTGCCCACCGACC---CCCCGGAAGCGGAAACAGAAT-CCCCGCGTGCCCCTTCCTCACTACCTTCTAAATCCCGCTGCAGCCATTGCCGCAGCCACGATGCCGAAACGAAAGAAGCAGAATCAGCACCA---GCCACCGACACAGCAGCAA------CCCCCACTGCCTGAGCGGGAAGAGACTGGAGATGAGGAGGATGGGAGTCCCATCGGTGAGGGGTCAGGGAGGGATGTGCACATGCCTGTCAAGCCCGTCCGGGCGAAGGGCTAGGGGCTAA-TAAGGTGCGAAGGA--AGGGGCTCTAACGGAAGGAGGAAGGGCGCACGCGCTGGGTAGGGATGGCA------GCAGGG----------------CTGTCTCAAATGGAGCCTTGAACCAGGAGTTCTCTTACTGGAACCGTCAACCTCAATACGG-C-CCCAAACCTTTCTGGAGAAGGCGGGGGTGGAGA------GAGTAA-----AGAGCTCTTTTGCGCAGCCGCAGAACAGT-AGGGGAAAGGGG-CAGTAGAGATGTTGCAGATTGCGATGA-CTGGGTTGACAGTTTGTATCCGGATTTTGACTGAA--AAGGTACAGGTG-CCGCTTTCTCTAAACTA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     765632 1791 -   1829203 CCCCCAGAGGTGCAGCGGGCACACCCCTCCTTCC-AGCTGTGCGGAAGCCCGAGCCCCGCCTCCTCCTCCAGCT-------CCCGCACTGACCtctcttccgctcccgtttgtcctgcaactgcttcttcttctgcttcACGCTGAAGGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCCGCCCTCCGCCGAGCT-CCTGCCGCCTCAACTGACTG-------CCCCCCGGGGCAGTCCCCGCCGCAGGGGCCCGGGACCCTAGAGGAGGCGGAGCTAGCAGGTGACGTCAGCGGGCGGGCCCGACCGAATTGCCGCCGCGGCGGCGATGGAAGGCAGACAGGGGAGATACACAGTCACTTCCCTCCAGGAGCGAGGCGAGAGGATGATGCGGGGTGGGCTACTGGCACGTGAGAGCCAGTGGCACCGAGAGAGCACCCAG-GCAGCGAGGAAGGAGGCGCGCGTGGGAGGACCAGGCTAACTCCGTCACGGACGCTACCAACTCGCGTTCGGAGGA-GGGGGAGCGCGTGTCATCACTACCTTGCGCTCCCGGGAGAAGCTACCACTCACCTGGAGGGGGCGGCGGAGCGGAGGGCGGGGCCTACTACCT-GGGGAGA-GGGGGAGTGGACACGCTGTGGCTACACTCCCAACCCCCC------GGGCTTGACCTTAGT-GGAAAGCCGAGACTGTGCGTCCCGGGAATGAAGCCAAGTTGCTGGGCTACACCGGGGGCACGGTCAGAGGTCTTTACGGGAGGGCGGCGGTCTGAAGAGTCCTGGCTGCCGACCTGCTGGGACCCAGATTCCTTGTGGGAACGATGATAAGGAGCAGGTTTACAGATCAG-AAGTGCAAAAGCTGGCGAGAAGGGAAACCCAGGCGGGACAAGGACTTTTGGAGGGAGGTCAAAGGGCACAAAGTTGTGCCTGCAGCTGTTACCATAGTAACCGAGGACCGGATGTGGCGATCTTACGGTGCGACAGTC--CTCTGCTCAGGCCTTCTG-GCCCGAGAGCCTGTTGACTCTGTGACACACTCTGAGGAGCTGGTTGTGG----------TGTTTTCCAGCGAGGGAAGAAGAGAGGAA-TTTT---------TTCAAAGCATTTATAGAAACGCAGCAAAGGGAAGGTGTGAGGTT-GCCGCCATGCCTGGCAGAGACGGAGGGAGGCAGTTTACTCCAGAATGCGGCCGCCACAGATGTTCTCCGCAACCTTCCGGAAGTGGAATGGTGGGAGCCTCGGCATTGCTGCCCACCGACC---CCCCGGAAGCGGAAACAGAAT-CCCCGCGTACCCCTTCCTCACTACCCTCCAAATCCCGCTGCAGCCATTGCAGCAGCCACGATGCCGAAACGAAAGAAGCAGAATCAGCACCA---GCCACCGACACAGCAGCAA------CCCCCACTGCCCGAGCGGGAAGAGACTGGAGATGAGGAGGATGGGAGTCCCATCGGTGAGGGGTCAGGGAGGGATGTGCACATGCCTGTCAAGCCCGTCCGGGCGAAGGGCTAGGGGCTAA-TAAGGTGCGAAGGA--GGGGGCTGTAACGGAAGGAGGAAGGGCGCACGCGCTGGGTAGGGATGGCA------GCAGGG----------------CTGTCCCAAATGGAGCCTTGAACCAGGAGTTCTCTTACTGGAACCGTCAACCTCAATACGG-C-CCCAAACCTTTCTGGAGAAGGCGGGGGTGGAGA------GAGTAA-----AGAGCTCTTTTGCGCAGCCGCAGAACAGT-AGGGGAAAGGGG-CAGTAGAGATGTTGCAGATTGCGATGA-CTGGGTTGACAGTTTGTATCCGGATTTTGACTGAA--AAGGTACAGGTG-CCGCTTTCTCTAAACTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30926226 1782 + 171630274 CCCCGAGAAGTGCAGCTAGCACACCCCTCCTTCC-AGATGTGCGGGAGCCTGAGCCCCGCCCCCTCCTCCCGCT-------CCCGCACTGACCTCTCTTCCGCTCCCGCTTGTCCTGCAACTGCTTCTTCTTCTGCTTCACGCTGAAGGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCCGCCCTCCACCGAGCT-CCCGCCGCCTCAACTAACTG--------CCCCCGGGGCAGCCCCCGCCGCAGGGGCCCGGGACCCTAGAGGAGGCGGGGCTAGCAGGTGACGTCAGCGGGCGGGCCCGACCGAATTGCCGCGGCGGCCGCGATGGAAGACGACCGAGGGAGATATACAGTCACTTCCCTCCAGGAGCTAGGCGAGAGGATGATGCGGGGTGGGCTACTGGCACGTGAGAGCCAGTGGCACCGAGAGGGCGCCCCG-GCGGCGGCGAAGGAGGCGCGCGTGGGAGGACCGGGCTAACTCCGTCACGGACGCTACCAACTTGCGTTCGGAGAA-GGGGGGATGCGTGTCATCACTACTTTGCGCTCCCGGGAGAAGCTACCACTCACCTGGAGGGGGCGGTGGAGTGGAGGGCGGGGCCTACTACCTAGGGGAGA-GGAGGCGTGGACTCGCTGAGACTACAAAACCAA-CCCTC------GGGCTAGACCTTACT-GGAAAACCGAGACTGTGCGTCCCGGGTAAGAAGCCAGGTTGCTGAGCTACACCGGGGGCACGATCAGAGGTCTTTAGGGGAGGGCGGCGGTCTGAAGAGTCCTGGGTGCCGACCTGCTGGGACCCAAATTCCTTGTGAGAACGATGATAAGTAGCAGGTTTACAGAT----GAGTGCAAAAGGGGACGAGAAGGGAAACCCAAACGGCACAAGGAC-TTTGGAGGGAGGTCAGAGGGCACGAAGTTGTGCCTGCAGCTGTTACCATAGTAACCGGGGACCGGATGTGGCGATCTTACGGTGCGACAGTC--CTCTTCTCAGGCCTTCTG-GCCAGAGAGCCTCTTGACTCTGTGGCACACTCCGAGGAGCTGGTTGTGG----------TGGTTTCCAACGAGGGAAGAAGAGAGGAATTTTT---------TTCAAAGCAGTTATAGAAACGCAGCAAAGGGAAGGTGTGAGGTT-GCCACCATGCCTAGCAGAGACGGACAGAGGCAGTTTACTCCAGAATGCGGCCGCTGCAGATGTTCCCCGCAACGTTCCGGAAATGGAATGGCGGGAGCCTCATCCTCGCTGCCCACCGCCC---CGCCGGAAGCGGAAACAGAAT-CCCCGTGTGCCCCTTCCTCACTGCCCTCCAAATCCCGCTGCAGCCATTGCGGCAGCCACGATGCCGAAACGAAAGAAGCAGAATCAGCACCA---GCCACCATCACAGCAGCAG------CCCCCACTGCCCGAGCGGGAAGATACTGGAGATGAGGAGGATGGGAGTCCCATCGGTGAGGGGTCGGGGAGGGACGTGCACATGCCTGTC-AGCCCGTCCGGGCGAGGGGCTAGGGGCTGG-TAAGGTGCAAAGGA--GGGGGCTGTAACGGAAGGAGGAAGGGCGCACGCGCTGGGGAGGAATGGAA--------GGGG----------------CTGTCCCAAATGGAGCCTTGAACGAGGAGTTCTCTTACTGGAACCATCAACCTCAAACTGG-C-CCCAAACCTTTCTGGAGAAGGCGGGGGTGGCGA------GAATAA-----AGAGCTCTTTTGCGCAGTCGCAGAACAAT-AGGGGAAAGGGA-CAGTAGAGATGTTGCAGATTGTGATGA-CTGGGATGACAGTTTGTATCCAGAC--TGACTGAA--GAGGTGCAGGTG-CAGCTTTCTCTGAACTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            97847 1780 -    750284 CCCCGAGAGGTGCAGCGATCACACCCCTCCTTCC-AGATGTGCGGGAGCCTGAGCCCCGCCCCCTCCTCCCGCT-------CCCGCACTGACCTCTCTTCCGCTCCCGCTTGTCCTGCAACTGCTTCTTCTTCTGCTTCACGCTGAAGGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCCGCCCTCCACCGAGCT-CCCGCCGCCTCAACTGACTg-------ccccccggggcagcccccgccgcaggggcccgggACCCTAGGGGAGGCGGGGCTAGCAGATGACGTCAGCGGGCGGGCCCGACTGAATTGCCGCGGCGGCTGCGATGGAAGGCGAACGAGGGAGATATACAGTCACTTCCCTCCAGGAGCTAGGCGAGAGGATGATGCGGGGTGGGCTACTGGCACGTGAGAGCCACTAGCACCGAGAGGGCGCCCCG-GCGGCGAAGAAGGAGGCGCGCGTGGGAGGACCGGGCTAACTCCGTCACGGACGCTACCAACTCGCGTTCGGAGAA-GGGGGAACGCGTGTCATCACTACCTTGCGCTCCCGGGAGAAGCTACCACTCACCTGGAGGGGGCGGTGGAGTGGAGGGCGGGGCTTA-TACCTAGGGGAGA-GGGGGCGTGGACTCACTGAGACT--AAAACCAA-CCCTC------GGGCTTGACCTTAGT-GGAAAACCGAGAC--TGCGTCTCGGGTAGGCAGCCAGGTTGCTGGGCTACACTAGGGGCACGGTCAGAGGTCTTTAGGGGAGGGCGGTGGTCTGAAGAGTCCTGGGTGCCGACCTGCTGGGACCCAAATTCCTTGTGAGAACGATGATAAGGAGCAGGTTTACAGAT----AAGTGCAAAAGGGGACAAGAAGGGAAACCCAAGCGGGACAAGGAC-TTTGGAGGGAGGTCAGAGGGCACGAAGTTGTGCCTGCAGCTGTTACCATAGTAACCGGGGACCGGATGTGGCGATCTTACGGTGCGACAGTC--CTCTTCTCAGGCCTTCTG-GCCCGAGAGCCTCTTGACTCTGTGGCACACTCTGAGGAGCTGGTTGTGG----------TGGTTTCCAACGAGGGAAGAAGAGAGGAATTTTT---------TTCAAAGCAGTTACAGAAATGCAGCAAAGGGAAGCTGTGAGGTT-GCCACCATGCCTGGCAGAGACGGACTGAGGCAGTTTACTCCAGAATGCGGCCGCTGCAGATGTTCCCCGCAACCTTCCGGAAGTGGAATGGCGGGAGCCTCATCCTCGCTGCCCACCGCCC---CCCCGGAAGCGGAAACAGAATCCCCCACGTGCCCCTTCCTCACTGCCCTCCAAATCCCGCTGCAGCCATTGCCGCAGCCACGATGCCGAAACGAAAGAAGCAGAATCCGCACCA---GCCACCACCACAGCAGCAG------CCCCCACTGCCCGAGCGGGAAGAGACTGGAGATGAGGAGGATGGGAGTCCCATCGGTGAGGGGTCGGGGAGGGATGTGCACATGCCTGTC-AGCCCGTCCGGGCGAGGGGCTAGGGGCTGC-TAAGGTGCAAAGGA--GGGGGCTGTAACGGAAGGAGGAAGGGCGCACGCGCTGGGGAGGAATGGAA------G-GGGG----------------CTGTCCCAAATGGAGCCTTGAACGAGGAGTTCTCTTACTGGAACCATCAACCTCAAACTGG-C-CCCAAACCTTTCTGGAGAAGGCGGGGGTGGTGA------GAATAA-----AGAGCTCTTTTGCGCAGTCGCAGAACAGT-AGGGGAAAGGGG-CAGTAGAGATGTTGCAGATTGTGATGA-CTGGGATGACAGCTTGTATGCCGAC--TGACTGAA--AAGGTGCAGGTG-CAGCTTTCTCTGAACTA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1345805 1784 -   1771730 CCCCGAGAGGTGCAGTGAGCACACCCCTCCTTCC-AGATGTGCGGGAGCCTGAGccccgccccctcctcccgct-------cccgcactgacctctcttccgctcccgcttgtcctgcaactgcttcttcttctgcttcACGCTGAAGGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCCGCCCTCCGCCGAGCT-CCCGCCGCCTCAACTGACTG-------CCCCCCGGGGCAGCCCCCGCCGCAGGGGCCCGGGACCCTAGAGGAGGCGGAGCTAGCAGGTGACGTCAGCGGGCGGGCCCGACCGAATTGCCGCGGCGGCCGCGATGGAAGGCGAACGAGGGAGATATACAGTCACTTCCCTCCAGGAGCTAGGGGAGAGGATGATGCGGGGTGGGCTACTGGCACGTGAGAGCCAGTGGCACCGACAGGGCGCCCCG-GCGGCGAAGGAGGAGGCGCGCGTGGGAGGACCGGGCTAACTCCGTCACGGACGCTACCAACTCGCGTTCGGAGAA-GGGGGGACGCGTGTCATCACTACCTTGCGCTCCCGGGAGAAGCTACCACTCACCTGGAGGGGCCGGTGGAGTGGAGGGCGGGGCCTACTACCTAGGGGAGA-CGGGGCGTGGACTCGCTGAGACTACAAATCCAA-CCCTC------GGGCTTGACCTTCGT-GGAAAATCGAGACTGTGCGTCCCGGATAGGAAGCCAGGTTGCTGGGCTACACCGGGGGCACGGTCAGAGGTCTTTAGGGGAGGGCGGCGGTCTGAAGAGTCCTGGGTGCCGACCTGCTGGGACCCAAATTCCTTGTGAGAACGATGATAAGGAGCAGGTTTACAGAT----AAGTGCAAAAGGGGACGAGAAGGGAAACCCAAGCGGGACAAGGAC-TTTGGAGGGAGGTCAGAGGGCACGAAGTTGTGCCTGCAGCTGTTACCATAGTAACCAGGGACCGGATGTGGCGATCTTACGGTGCGACAGTC--CTCTTCTCAGGCCTTCTG-GCCCGAGAGCCTCTTGACTCTGTGGCACACTCTGAGGAGCTGGTTGTGG----------TGGTTTCCAACGAGGGAAGAAGAGAGGAATTTTT---------TTCAAAGCAGTTACAGAAATGCAGCAAAGGGAAGGTGTGAGGTT-GCCACCATGCCTGGCAGAGACGGACGGAGGCAGTTTACTACAGAACGCGGGCGCTGCAGATGTTCCCCGCAACCTTCCGGAAGTGGAATAGCGGGAGCCTCATCCTCGCTGCCCACCGCCC---CCCCGGAAGCGGAAACAGAAT-CCCCATGTGCCCCTTCCTCACTGCCCTCCAAATCCCGCTGCAGCCATTGCCGCAGCCACGATGCCGAAACGAAAGAAGCAGAATCAGCACCA---GCCACCACCACAGCAGCAG------CCCCCACTGCCCGAGCGGGAAGAGACTGGAGATGAGGAGGATGGGAGTCCCATCGGTGAGGGGTCGGGGAGGGATGTGCACATGCCTGTC-AGCCCGTCTGGGCGAGGGGCTAGGGGCTGC-TAAGGTGCAAAGGA--GGGGGCTGTAACGGAAGGAGGAAGGGCGCACGCGCTGGGGAGGAATGGAA------A-GGGG----------------CTGTCCCAAATGGAGCCTTCAACGAGGAGTTCTCTTACTGGAACCATCAACCTCAAACTGG-C-CCCAAACCTTTCTGGAGAAGGCGGGGGTGGCGA------GAATAA-----AGAGCTCTTTTGCGCAGTCGCAGAACAGT-AGGGGAAAGGGG-CAGTAGAGATGTTGCAGATTGTGATGA-CTGGGAAGACAGCTTGTATCCAGAC--TGACTGAA--AAGGTGCAGGTG-CAGGTTTCTCTGAACTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      44829 1780 -    566255 CCCCGAGAGGTGCAGCGAGCACACCCCTCCTTCC-AGATGTGCGGGAGCCTGAGCCCCGCCCCCTCCTCCCGCT-------CCCGCACTGACCTCTCTTCCGTTCCCGCTTGTCCTGCAACTGCTTCTTCTTCTGCTTCACGCTGAAGGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCCGCCCTCCGCCGAGCT-CCTGCCGCCTCAACTGACTGC------CCCCCCGGGGCAGCCCCCGCCGCAGGGGCCCGGGACCCTAGAGGAGGCGGGGCTAGCAGGTGACGTCAGCGGGCGGGCCCGACCGAATTGACACGGCGGCCGCGATGGAAGGCGAACGAGGGAGATATACAGTCACTTCCCTCCAGGAGCTAGGCGAGAGGGTGATGCGGGATGGGCTACTAGCACGTGAGAGCCAGTGGCACCGAGAGGGCGCCCCG-GCGGCGAAGAAGGAGGCGCGCGTGGGAGGACCGGGCTAACTCCGTCATGGACGCTACCAACTCGCGTTCGGAAAA-GGGGGGACGCGTGTCATCACTACCTTGCGCTCCCGGGAGAAGCTACCACTCACCTGGAGGGGGCGGTGGAGT-GAGGGCGGGGCCTACTACCTAGGGGAGA-GGGGGCGTGGACTCGCTGAGACTACAAAACCAA-CCCTC------GGGCTTGACCTTAGT-GGAAAACTGAGACTGTGCGTCCCGGGTAGGAAGCCAGGTTGCTAGGCTACACCGGGGCCACGGTCAGAGGTCTTTAGGGGAGGGCGGCGGTCTGAAGAGTCCTGGGTGCCGACCTGCTGGGACC----TTCCTTGTGAGAACGATGATAAGGAGCAGGTTTACAGGT----AAGTGCAAAAGGGGACAAGAAGGGAAACCCAAGCGGGACAAGGAC-TTTGGAGGGAGGTCAGAGGGCACGAAGTTGTGCCTGCAGCTGTTACCATAGTAACCGTGGACCGGATATGGCGATCTTACGGTGCGACAGTC--CTCTTCTCAGGCCTTCTG-GCCCGAGAGCCTCTTGACTCTGTGACACACTCTGAGGAGCTGGTTGTGG----------TGGTTTCCAACGAGGGAAGAAGAGAGGAATTTTT---------TTCAAAGCAGTTACAGAAACGCAACAAAGGGAAGGTGTGAGGTT-GCCACCATGCCTGGCAGAGACGGACGGAGACAGTTTACTCCAGAATGCGGCCGCTGCAGATATCCCCCGCAGCCTTCCGGAAGTGGAATGGCGGGAGCCTCATCCTCGCTGCCCACCGCCC---CCCCGGAAGCGGAAACAGAAT-TCCCGTGTGCCCCTTCCTCACTGCCCTCCAAATCCCGCTGCAGCCATTGCCGCAGCCACGATGCCGAAACGAAAGAAGCAGAATCAGCACCA---GCCACCACCACAGCAGCTG------CCCCCACTGCCTGAGCAGGAAGAGACTGGAGATGAGGAGGATGGGAGTCCCATCGGTGAGGGGTCGGGGAGGGATGTACACATGCCTGTC-AGCCCGTCCGGGAGAGGGGCTAGGGGCTGG-TAAGGTGCAAAGGA--GGGGGCTGTAACGGAAGGAGGAAGGGCGCACGCGCTGGGGAGGAATGGAA------G-GGGG----------------CTGTCCCAAATGGAGCCTTGAAAGAGGAGTTCTCTTACTGGAACCATCAACCTCAAACTGG-C-CCCAAACCTTTCTGGAGAAGGCGGGGGTGGTGA------GAATAA-----AGAGCTGTTTTGCGCAGTCGCAGAACAGT-AGGGGAAAGGGG-CAGTAAGGATGTTGCAGATTGTGATGA-CTGGGATGACAGTTTGTATCCAGAC--TGACTGAA--AAGGTGCAGGTG-CAGCTTTCTCTGAACTA
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               659859 1761 + 123392446 CCCCCAGAGGTGCGGCGGGCACACCCCTCCTGCC-AGATGTGCGGGAGCCCGAGCCCCGCCCCctcctcccgctcctggc-cctgcactgacctctcttccgctcccgcttgtcctgcaactgcttcttcttctgcttcACGCTGAAGGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCCGCCCTGCGCCGAGCT-CCCGCCGCCTCAACTGACT----------CCCCGGGGCAG-CCCAGCCGCACGGGCCCGGGACCCGGGAGGAGGCGGGGCTCGCAGGTGACGTCAGCGGGCCGGCCCGGCCCAATGGCCGCGGCT----CGGTGGAAGGCGGGCGCGAGAAAC--ACGGTCACTTCCCCCTGGGAGCAGGGC--GAGGGCGGTGCGGGACGCGCTACCGGCACGGGGAAGCCAGCGGCGCGGAGAGGGC-CCCCC-GCGGCGAGCAGGGCGGCGCGCGTGGGAGGACCGGGCTAACTCCGTCACGGACGCTACCAAGCAGCGCCCGGAGGG-GGGGGGACGCGTGTCATCACTACCTTGCGTT-CCGGGAGGAGCTACCACTCACCTGGA-GGGGCGGCGGGGCGCAGGGCGGGTCCTTCTGCCTAAGGGAGA--GGAGCGTGGACACGCTGAGGCCACACTGCCAA-CTCGA------GGGATTGACCCTAGT-GAAACGCCGAGACCGCGCGTCCCGGGAATGACGCCAGGTTGCTGTGCTACACTGGGGGCG-GGTCAGAGGTCTTGAGGGGCTGGTGGCGGT----------CTGGGCGCCCACCTGCTGGGACCCAAATTCCTTGTGGGAACGGTAATAAGGGGTAGGGTTACAGATCAT-AAATGTGAAAGCGGACAAGAAGGGAAACCCAGGTGGGACAATGACTTTTGGAATGAGGTCAGAGGGCACGAAGTTGTGCCTGCAGCTGTTACCATAGTAACCAGGGGCCGGATGTGGCGATCAAATGATGCGACAGTCACCTCTTCTCAGGCCTTCTA-GCCCGAGAGCCT-TTGACTCTG--GCACACTGTGAGAAACTGATTATAG----------TGTTGTCCAGCTAGACG-GAAGAGAGGAA-TTTT---------TTTTAAGCATTTAAAGGT-----ACAAAGGGGAGGTTTAAGATA-GCCGTCATGCCAGGCAGAGATGGAGGGAAGCAGTTTACTTGAGAATGCGGCCGCCGCCGAGACTCCCCGCAACCTTCCGGAAGTGCAATGGCGGGAACCTCAGCCTCACTGCCCACCGCCC----CCCGGAAGCGGAAACAGAAT-CCCATCGTGCCCCTTCCTCACTGCCCTCCAAATCCCGCTGCAGCCATTGCCGCAGCCACGATGCCGAAACGAAagaagcagaatcagcatca---gccaccgccgccgcagcag------cCCCCACTGCCCGAGCGGGAAGAGGCTGGAGACGAGGATGATGGGAGTCCCGTCGGTGAGGGGTCTGGGAGGGATGTGCACGTGCCTGTC-AGCCCGTGCAGGGCCTGGGCTA-GGGCTGA-TAAGGTGCAGGGGAGGGGGGGGCCTAACGGAAGGAGGAAGGGCGCACGCGCTGGGGCGAGATGGCG------G-GTGA-----------------TGTCCCGAATGGAACCCTGAGCGAGGAGTTCTCTAACTTGAACCATCAACCTCAATCTGG-C-CCCAAACCTTTCTAGAGAAGGCGGGGGAGGAGA------GGATAA-----AGAGCTCGTATGCGCAGCCGCAGAACGGC-AGGGAAGAGGGG-CAGCAGAAATGTTGCAGATTGCGGTGA-CTGGGATGACAACTTGTGACCAGACTTTCACTGGG--AAGGTGGAAGTGGCAGCTTTCTCTAAACTA
i micMur3.chr6             I 57 I 40
s proCoq1.NW_012149775v1     691385 1801 -   1411461 CCCCCAGAGGTGCGGCGGGCACACCCCTCCTGCC-AGATGTGCGGGAGcccgagccccgccccctcctcccgctccccgctcccgcactgacctctcttccgctcccgcttgtcctgcaactgcttcttcttctgcttcACGCTGAAGGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCCGCCCTGCGCCGAGCT-CCCGCCGCCTCAACTGACT---------CCCCCGGGGCAGCCCCAGCCGCAAGGGCCCGGGACCCTGGAGGAGGCGGGGCTCGCAGGTGACGTCAGCGGGCGGGCCCGGCCGAATCGCCGCGGCTGCTGCGGTGAAAGGCGGACGCGAGAAAC--ACGGTCACTTCTCCCTGGGAGCAGGGCGAGAGGGTGATGCGGGACGGGCTACCGGCACATGGAAGCCAGCGGCGCGGAGAGAGCGCCCCG-GCGGCGAGCAGGGCGGCGCGCGTGGGAGGATCGGGCTAACTCCGTCACGGACGCTACCACCTCGCGTTCGGAGCA-GGGGGGACGCGTGTCATCACTACCTTGCGTTCCCGGGAGGAGCTACCACTCACCTGGAGGGGGCGGCGGGGCGCAGGGCGGGTCCTTCTGCCTAAGGGAGAGGGGGGCGTGGACACGCTGAGGCTCCACTGCCAA-CTCGA------GGGATTGACCTTAGT-CAAACGCCGAGACTGCGCTTCCCGGGAATGACGCCCGGTTGCTGTGCTACACCGGGGGCACCGTCAGAGGTCTTG-GGGGCTGGTGGCGGT----------CCGGACGCCGACCTGCTGGGACCCAGATTCCTTGAGGGAACGGTAATAAGGGGTATGTTTACAGATCAT-AAATGTGAGAGCGGACAAGAAGGGAAACCCAGGTGGGACAAGGACTTTTGGAGGGAGGTCAGAGGGCACGAAGTTGTGCCTGCAGCTGTTACCATAGTAACCGGGGGCCGGATGTGGCGATCTTATGGTGCGACAGTCACCTCTTCTCAGGCCTTCTG-GCCCGAGACCCTGTTGACTCTG--GCACACTGCGAGGAGCTGGTTATGG----------TGTTGTCCAGCTAGGCG-GAAGAGAGGAA-TTTTTTTTAATTCTTTTAAGCATTTATAGGA-----ACAAAGGAAAGGTTTAAGATT-GCCGTCATGCGCGGCAGAGGTGGACCGAGGCAGTTTACTTAAGAATGCGGCCGCGGCCGAGACTACCACCAGCCTTCCGGAAGTGGAATGGCGGCAGCCTCAGCCTCACTGCCCATCGCCC---GCCCGGAAGCGGAAACAGAAT-CCCAGCGTGCCCCTTCCTCACTGCCCTCCAAATCCCGCTGCAGCCATTGCCGCAGCCACGATGCCGAAACGAAAGAAGCAGAATCAGCACCA---GCCACCGCCGCCGCAGCAA------CCCCCACTGCCGGAGCGGGAAGAGACTGGAGATGAGGAGGATGGGAGTCCCGTCGGTGAGGGGTCTGGGAGGGATGTGCACATGGCTGTC-AGCCCGTCCGGGGAATGGGCTA-GGGCTGA-TAAGGTGCAGTGGA---GGGGGTCTAACGGAAGGAGGAAGGGCGCACGCGCTGGGGCGAGATGGCG------G-GGGAGGGGGTGCGGGGGGGGCTGTCCCTAATGGAACCTTGAGTGAGGAGTTCTCTAACTTGAACCATCAACCTCAATCCGGCC-CCCAAACCTTTCTAGAGAAGGCGGGGGAGGAGA------GGATAA-----AGAGCTCGTATGCGCAGCCGCAGAACGGC-AGGGAAGAGGGG-CAGCAGAGATGTTGCAGATTGCGATGA-CTGGGATGACAACTTGTGACCAGACTTTCACTGGG--AAGGTGGAAGTGACAGCTTTCTCTAAACTA
i proCoq1.NW_012149775v1   C 0 I 39
s otoGar3.GL873550           710871 1782 +  18854210 CCACCAGAGGTGCGGCGGGCACACCCCTCCTTCC-AGATGTGCGGGCGCCCGAGCCCCGCCCCCTCCTCCCGCT-------CCCGCACTGACCTCTCTTCCGCTCCCGCTTGTCCTGCAACTGCTTCTTTTTCTGCTTCACGCTGAAGGGCTTCTTCCTCGGCATGGCCCGGACCAGTCACCTGGCCCGCCCTCCGCCGAGCT-CCCGCCGCCTCAACCGACT--------CCCCCCGGGGCAGCCCCAGCCGCAAGGGCCCGGGACCCTAGAGGAGGCGGGGCTAGACGGTGACGTCAGCGGGCGGGCCCGACCGAATTGCCGGGGCTGCAGCAGTGGAAGGCGGACGGGAGAAAC--ACAGTAACTTCCCCCTGGGAACCAGGGGAGAGGATGATGCGGGATGAGCTAAGGGCACATGAGAGCCAGCGGTACCGAAAGGGCGCCCCA-GTGGCGAAGAAGGAGGCGCGCGTGGGAGGTTCGGGCTAACTTCGTCACGGACGCTACCAATTCGCGTTCGGAGAA-GGGGGGACGCGTGTCATCACTACCTTACGTTCCCGGGAGGAGCTACCACTCACCTGGA-GGGGCGGCGGAACGGAGGGCGGGTCCTTCTACCTAACGGAGA-GGAGGCGTGGAAACGCTGGGGCTACACTACCAA-CCCGA------GGAATTGACTTTAGT-GGAAAGCCGAGGCTGTGCGTCCCGGGAATGAAGCCAGGATGCTGTCATACAGAGGAGGCACGGTCAAAGGTCTTGAGGAGCTGGTGGCGGTCAGAAGAGTCCTGTACGCCGACCTTCTGGGACCCAAATTTTTTGTGGAAACGATAATAAGGAGTAGTTTTACAGATTAT-AAATGCGAGAGCAGAC---AAGGGAAACACAGGTGGGAC-AGGAGTTTTGGAGAGAGGTCAGAGGGCATGAAGTTGTGCCTGCAGCAGTTACCACAGTAAC--AGGACCGGATGTGGCGTTCTTACGGCGCGACAGTCATCTCTTCTCAGGCCTTCTG-GCCCGAGAGCCTGTTGACTTTGTAGCACACAATGAGGAGCTGGTTATGG----------TGTGTTCCAGCTAGGGG-TAAGAGAGGAT-TTATT--------TTTTGAGCCTTTATATGAACGTGACAAAAGGAAAGTTAGAGATT-GCCGACATGCCCGGCAGAGAC-GAGTAAGGCAGTTTACTCGAGAACGCAGCCGCTGCAGATGCACCCCGCAGCCTTCCGGAAGTGGAATGGCCGGAGCCTTAGCCTCACTGCCCACCGCCCCCCCCCCGGAAGCGGAAACGGAAT-CCCAGCGTGCCCCTTCCTCACTGCCCTCCAATTCCCGCTGCAGCCATTGCCTCAGCCGCGATGCCAAAACTAAAGAAGCAGAATCAGCACCACTTACCGCCGCCACCGCAGCAG------CACCTATTATCGGAGAGGGAAGAGACTGGAGATGAGGAGGATGGGAGTCCCGTCGGTGAGGGGTCGGGGAGGGATGTGCACATGCCTGTC-AGCCCG-CCGGGAGATGACCTA-GGGCTGATTAAGGTGCGGGGGA--GGGGGCTCTAACGGAAGGAGGAAGGGCGCACGCGCTGGGGCGACACGGAG------G-GGGG----------------CTGTCCTGAATGTACCCTCGAGCGAGGACTTGTCTAACTTGAACCATCAACCTCAATCCAGCC-CCTAAACCTTTCTAGAGAAGGCAGGGGAGGAGA------GAATAA-----AGAGCTCATATGCGCAGCCGCAAAACGGC-AGGGAAGAGGG------AGAGATGTTGCAGATTTCGATGA-CTGGGATGACAGTTTGTGACCAGACTTTCACTGGG--AAGATGGAAGTGGAAGCTTTCTCTAAACTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59006962 1547 -  94987271 ---CCCGCGGTGCCGCG-GCACAGCCCTCCTCCAGAGCTGCGCAGCGGC-------------------CCCGCC-------CCCTCCCTGACCTCGCTTCCGCTCCCGCTTGTCCTGCAGCTGCTTCTTCTTCTGCTTCACGCTGAAGGGCTTCTTCCTCGGCATGGCC----CCGGAGCCCCGGCCCGCCCTCCGCCGAGCTCCCCGCCGCCGCAACTGA----------CTccccggggcagcccccgccg--gcggcccggggccctgg-ggaggcggggccg--cggTGACGTCAGCAG-------CGA-------------------GCGGCGGGGAGCGG------------------------------GGAGCGGGGCGGCGGG--GATGCAAGCGG------CGGCACGTGAGAGTCCGCGGGTCCGGGA---TGCACGGTGCGGCGA-GCGGGAGACGCGCGTGGGAGGCCCGAGCCGACTCCGTCACGGGCGCTACCAAGTGGCAGTCGCGGGA-GGGGGGACGCGTGTCACCGCCGCCCGGCGCTCCCGGGAG---CTGCCACTCACCTGGCGGGGGCCG------------------------------GGCGA-CGGGGCGAGGACACG------CCCCACCGCGCG-GCCGCCTGGAGAGGATGGCCCCTGGCGGGAGAGCCGGGACTGCGCT-----------------GGCTGCC-----------------------------------------CGGTGGACTG-GCTGCCCCGTGGACTGGCCTGC-GGCAACAGGACTCGGTAAGGAGATTGCGG-AAGAGGCAGGTTCACTGGCCAC-ACGTGCGAGCGCGGGTGAGGAGGAAAA-GCGAGCGGGACAAGGACTTTTGGAGAGAGGTCAGAGAGCACGGAGTTGTGGCTGTAGTTGTTGCCATGGTAACTGGGGCCCGGATGTGGCGACCTTAGGATGCGACAGGC--CTCT-CGCGTGCCGCCAGAGTCCCGAAGCCTGT----CCGGTGTCTCACTGGAATGGG------GTGG----------TGCTTTCCCACGTG-------GAGAGGAA-CTGC--------------------------------ACAAGGGGGAG--CAAAGCTT-CCCCACGCGCGCGGCGGGGT--GAGCGAGGCACCTTGTAGGAGCGAACGGCCGCGGCACAT-----CCACGACCTCCCGGAAGTGGCATGGTGGGCGCCTCGGTCACCCGGCCCATCGCCC---ACCCGGAAGCGGAA--GGAAA-GCTAGTGTGCCCCTTCCTCACTGCCCTCCAAATCTTGCTGCAGCCATTGCCGCAGCCGCTATGCCGAAACGAAAGAAGCAGGACCAGCCGCC---GCCGCTGCCGCAGCAGCAGCAACATCTCGCACTGTCTGAGCGGGACGAGCCTGGAGATGAGGAGGATGAGCGCCCCATGGGTGAGGGGC------AGGGCGTGCACACGCCTGTC-AGCCGGCCAGG-----GGGCTAGGATAGAA-TGAAATGCGGGGGA--GGAGGTGCCAACGGAAGGAGGAAGGGCGCACGCGTGGAGGTGGGGTGGGACGTGGTGGGGGA----------------GGGATGCTGGTGGAACCTGGATTGAGGGCTTCGCTTGCTTGAACCCTCAACCTCAATCTGG-CTCCTAATCCTTTCTGGAGAAGGCAGGGGAGGTGGCGGCTCGGCTAA-----ACATCTGGCTTGCGCAACCGCAGAATGGCGGGGGGAGAGGGG-TGGCAGCGATGTTACAGATTGTGATGA-TCGGGAAGACAATTTGTGACCACACTTCCACTGGT--TAGGT--------CAACCTTCTGTGAACTA
i mm10.chr17               C 0 C 0
s canFam3.chr12              383134 1761 +  72498081 cgccc---ggcccAGGGGGCACACCCCTCCTTCC-CGGGGTGGGGAG--TCGGGCTCCGCCCCCTCCCCTCGCG-------CCCGCACTGACCTCGCTTCCGCTCCCGCTTGTCCTGCAACTGCTTCTTCTTCTGCTTCACGCTGAAGGGCTTCTTTCTCGGCATGGCCTGGACCAGTCACCTGGCCCACCCTCCACCGAGAT-CCTGCCGCCTCAACTGACTCCCCCCCACCCCCCCGGGCAACCCCCGCCGCAGGGGCCTGGGACCCAGGAGGGGGCGGGGCTAGGCGGTGACGTCA-CGGGCGGGC-CGGCCGAGTTCGC-CTGCGGCCTGGGTGGAAGGCGAA----GGAAAC--ACCGCCGCTTCCTTCT-GGAGCGAGGCGAAAAGACGCAGCGGGCCGGACTCTCCGCACGTGAGACTCACTGGCACCAAGAGGGCGCAGCG-GCGGCGAGCAAGGAGGCGCGCGTGGGAGGATCGAGCGAACTTCGTCACGGACGCTACCAAGTCGCTCTCGGAGGA-GGGGGGGCGTGTGTCATC---ACCTTGCGCG-CTGAGGGAACCTATCACTCACCTGGAGGGGGCGGGGGCGCGGAGGGC-GGGTCTACCATCTGGGACAGA--GGGGCGTGGGCGCGCCGAAGCTAATTTACCCC-GCCAC-----AAGGTTGGACCTTAGT-GGAAAGACTGGACTGCGCCTCCGGGGAATGAAGTCGACTTGCTGGTCTACACTGAGGGCAGTGCCAGACGTCTTGAGGGGCGGGTAGCGGTCTGAAGAGTTCTGGGCGCCACCTTGCTGGGGCCCAAATTCCTTGTGGGAGCGATGAT---GAGCAGCTTTACAGATCAT-AAAGGCAAGCGCGGGCGAGGAAGGAAACCCAGGTGGGACAAGGACTTTTGGAGAGAGGTCAGAGGGTGCGAAGTTGTGCCTGCCGCTGCTACCATGGTAACCG-GGACCGGATGTGGCGATCTTAAGGTGCGACAGCG-----TTCTCAGGCTTTCTG-GCCCGAGAGCCTATCAACTCTATGGCATACTATGAGGAGCCGGTTGTGGGTTTGTTTTTTTTTTTTCAGCGAGCGGAGAAGAGAGGAA-TTTT---------TTTTAAGCATTTATAGGAACGCAGCAAA---AAGGCTTGAGACT-GTCTCTGTGCCTGGCAGAGACCGACGGAGAC------CTCAAGAATG-AGCCGC-ACAAAAGCTCCCCGGAGCCTTCCGGAAGTGAAAGGGCGGGAGTCTCAGCCTCTCCTTCCACT-------CCCCGGAAGCGGAAACAGAAT-CCCAGCGTGCCCCTTCCTCACTGCCCTCCAAATCCCGCTGCAGCCATTGCCGCAACCACGATGCCCAAACGAAAGAAGCAGAATCAGCAGCA---GCCGCCGCCTCCGCAACAG------CCCCAGCTGCCAGAGCGGGGGGAGACTGGAGACGAGGAGGATGGGAGTCCCATCGGTGAGGAGCCCGGGAGGGCTGTGCACATGCCTGTC-AGCTGGTCTAGCTGAGGGGTTAGGGTCTGA-AAAGGTGCGGGGGA--GGGGGTTCTAACCGAAGGAGAAGGGGCGC------TGGGGCGGG--GCTA------G-GAGG----------------CTGTCCCCTGTGGAGCCCTGAGC---GAGTTCTCTTCCTTGATCCCTCAACTTCCATCCT--C-CTGTAACCTTTCTGAAGAAGGCGGGGGTGGGGG------GGGTAGCATATAAAGCTCATGCGCGCAGCCGCAGAACAGC-AAGGGAGAGGGGACCCTACAGAGATCGCAGATTGCAATGATTTAGTATAACAATTTGTGACCAGACTTGGGCCCAAGGAAGGTGGAAGTG-CAGCCTTCTCTAAACTA
i canFam3.chr12            C 0 C 0

a score=29242.000000
s hg38.chr6_GL000254v2_alt  1901865  6 +   4827813 GTCCT-----------------------------C
s panTro5.chr6             30747537  6 + 175400573 GTCCT-----------------------------C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31171166  6 + 173848474 GTCCT-----------------------------C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     678155  6 +   2037526 GTCCT-----------------------------C
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75346784  6 + 122973662 GTCCT-----------------------------C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31258262 35 + 172585720 GTCCTCTGGCCGAGTGAAAGGAGAAGAGAACTGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30547270 35 - 170955103 GTCCTCTGGCCGAGTGAAAGGAGAAGAGAACTGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     843553 35 +   1495729 GTCCTCTGGCCGAGTGAAAGGAGAAGAGAACTGAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      66692 35 -    811324 GTCCTCTGGCCGAGTGAAAGGAGAAGAGAACTGAC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30097209 35 -  71996105 GTCCTCTGGCCGAGTGAAAGGAGAAGAGAACTGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     104003 35 +    779361 GTCCTTTGGCCGAGTGAAAGGAGAAGAGAACTGAC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     767423 35 -   1829203 GTCCTCTGGCCGAGTGAAAGGAGAAGAGAACTGAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30928008  6 + 171630274 GTCCT-----------------------------C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            99627  6 -    750284 GTCCT-----------------------------C
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1347589  6 -   1771730 GTCCT-----------------------------C
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      46609  6 -    566255 GTCCT-----------------------------C
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           712653 35 +  18854210 CTCCCTTGGGGGAAGGGAAGGAGGAAAAAACTATC
i otoGar3.GL873550         C 0 I 4
s mm10.chr17               59008509  6 -  94987271 CTCCC-----------------------------C
i mm10.chr17               C 0 I 31
s canFam3.chr12              384895 34 +  72498081 -CTCTGAGGCGGGGAGTGCGGAGGATCATTCCGAT
i canFam3.chr12            C 0 C 0
e micMur3.chr6               661620 40 + 123392446 I
e proCoq1.NW_012149775v1     693186 39 -   1411461 I

a score=99010.000000
s hg38.chr6_GL000254v2_alt  1901871 5 +   4827813 TGGCC
s panTro5.chr6             30747543 5 + 175400573 TGGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31171172 5 + 173848474 TGGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     678161 5 +   2037526 TGGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75346790 5 + 122973662 TGGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31258297 5 + 172585720 TGGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30547305 5 - 170955103 TGGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     843588 5 +   1495729 TGGCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      66727 5 -    811324 TGGCC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30097244 5 -  71996105 TGGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     104038 5 +    779361 TGGCC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     767458 5 -   1829203 TGGCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30928014 5 + 171630274 TGGCC
i calJac3.chr4             C 0 I 1
s saiBol1.JH378327            99633 5 -    750284 TGGCC
i saiBol1.JH378327         C 0 I 1
s cebCap1.NW_016107755v1    1347595 5 -   1771730 TGGCC
i cebCap1.NW_016107755v1   C 0 I 32
s aotNan1.NW_018511496v1      46615 5 -    566255 TGGCC
i aotNan1.NW_018511496v1   C 0 I 1
s micMur3.chr6               661660 5 + 123392446 TGGCC
i micMur3.chr6             I 40 C 0
s proCoq1.NW_012149775v1     693225 5 -   1411461 TGGCC
i proCoq1.NW_012149775v1   I 39 C 0
s otoGar3.GL873550           712692 5 +  18854210 TGGCC
i otoGar3.GL873550         I 4 C 0
s mm10.chr17               59008546 5 -  94987271 GGGCC
i mm10.chr17               I 31 C 0
s canFam3.chr12              384929 5 +  72498081 TGGCC
i canFam3.chr12            C 0 C 0

a score=74861.000000
s hg38.chr6_GL000254v2_alt  1901876 8 +   4827813 AGCAGTTA
s panTro5.chr6             30747548 8 + 175400573 AGCAGTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31171177 8 + 173848474 AGCAGTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     678166 8 +   2037526 AGCAGTTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75346795 8 + 122973662 AGCAGTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31258302 8 + 172585720 AGCAGTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30547310 8 - 170955103 AGCAGTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     843593 8 +   1495729 AGCAGTTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      66732 8 -    811324 AGCAGTTA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30097249 8 -  71996105 AGCAGTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     104043 8 +    779361 AGCAGTTA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     767463 8 -   1829203 AGCAGTTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30928020 6 + 171630274 AGGGGA--
i calJac3.chr4             I 1 I 25
s saiBol1.JH378327            99639 6 -    750284 AGGGGA--
i saiBol1.JH378327         I 1 I 25
s aotNan1.NW_018511496v1      46621 6 -    566255 AGGTGA--
i aotNan1.NW_018511496v1   I 1 I 25
s micMur3.chr6               661665 8 + 123392446 AGCAGTTA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     693230 8 -   1411461 AGCAGTTA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           712697 8 +  18854210 AGCAGTTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59008551 8 -  94987271 AACAGTTA
i mm10.chr17               C 0 C 0
s canFam3.chr12              384934 8 +  72498081 AACAGTTA
i canFam3.chr12            C 0 C 0
e cebCap1.NW_016107755v1    1347600 32 -   1771730 I

a score=794824.000000
s hg38.chr6_GL000254v2_alt  1901884 50 +   4827813 AGGTGAGGGATTGGTTCATGTCTGGAGACACTTAGGTTGTTTTGGATAGC
s panTro5.chr6             30747556 50 + 175400573 AGGTGAGGGATTGGTTCATGTCTGGAGACACTTAGGTTGTTTTGGATAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31171185 50 + 173848474 AGGTGAGGGATTGGTTCATGTCTGGAGACACTTAGGTTGTTTTGGATAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     678174 50 +   2037526 AGGTGAGGGATTGGTTCATGTCTGGAGACACTTAGGTTGTTTTGGATAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75346803 50 + 122973662 AGGTGAGGGATTGGTTTATGTCTGGAGACGCTTAGATTGTTTTGGATAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31258310 50 + 172585720 AGGTGAGGGATTGGTTTATGTCTGGAGACACTTAGGTTGTTTTGGATAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30547318 50 - 170955103 AGGTGAGGGATTGGTTTATGTCTGGAGACACTTAGGTTGTTTTGGATAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     843601 50 +   1495729 AGGTGAGGGATTGGTTTATGTCTGGAGACACTTAGGTTGTTTTGGATAGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      66740 50 -    811324 AGGTGAGGGATTGGTTTATGTCTGGAGACACTTAGGTTGTTTTGGATAGC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30097257 50 -  71996105 AGGTGAGGGATTGGTTTATGTCTGGAGACACTTAGGTTGTTTTGGATAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     104051 50 +    779361 AGGTGAGGGATTGGTTTATGTCTGGAGACACTTAGGTTGTTTTGGATAGC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     767471 50 -   1829203 AGGTGAGGGATTGGTTTATGTCTGGAGACACTTAGGTTGTTTTGGATAGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30928051 50 + 171630274 AGTTGAGGGATTGGTTTATGTCTGGAGACACTTGGATTGTTTTGGATAGC
i calJac3.chr4             I 25 C 0
s saiBol1.JH378327            99670 50 -    750284 AGTTGAGGGATCGGTTTATGTCTGGAGACACTTGGGTTGTTTTGGATAGC
i saiBol1.JH378327         I 25 C 0
s cebCap1.NW_016107755v1    1347632 50 -   1771730 AGTTGAGGGATTGGTTTATGTCTGGAGACACTTGGGTTGTTTTGGATAGC
i cebCap1.NW_016107755v1   I 32 C 0
s aotNan1.NW_018511496v1      46652 50 -    566255 AGTTGAGGGATTGGTTTATGTCTGGAGACACTTGGGTTGTTTTGGATAGC
i aotNan1.NW_018511496v1   I 25 C 0
s micMur3.chr6               661673 50 + 123392446 AGGTGAGGGATTGGTTTATCTCTGCAATTACTTGGGATGTTTTGGATAGC
i micMur3.chr6             C 0 I 24
s proCoq1.NW_012149775v1     693238 50 -   1411461 AGGTGAGGGGTTGGTTTGTCTCTGCAATCACTTGGGATGTTTTGGATAGC
i proCoq1.NW_012149775v1   C 0 I 24
s otoGar3.GL873550           712705 50 +  18854210 AGGTGAGGGATTGGTTTATCTTTGGAATCACTTGGGATGTTTTGGATAGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59008559 44 -  94987271 AGGTGAGGGATTGGGGTACG--TGGAATCAC-TGGCATGTTGTGGAT---
i mm10.chr17               C 0 C 0
s canFam3.chr12              384942 50 +  72498081 AAGAGAGGGATTGGGTTACCTCTGGAATCACCTGGGATGTTTTGAATGGC
i canFam3.chr12            C 0 C 0

a score=342975.000000
s hg38.chr6_GL000254v2_alt  1901934 40 +   4827813 GACGGTACGGTGAAGAA---AAAAAGTTGT-CAGTATCTTTTCC
s panTro5.chr6             30747606 40 + 175400573 GACGGTACGGTGAAGAA---AAAAAGTTGT-CAGTATCTTTTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31171235 40 + 173848474 GACGGTACGGTGAAGAA---AAAAAGTTGT-CAGTATCTTTTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     678224 40 +   2037526 GACGGTACGGTGAAGAA---AAAAAGTTGT-CAGTATCTTTTCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75346853 43 + 122973662 GACGGTACGGTGAAGAAAAGAAAAAGTTGT-CAGTATCTTTTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31258360 39 + 172585720 GACGGTACGGTGAGGAAAAGAAAAAGTT-----GTATCTTTTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30547368 39 - 170955103 GACGGTACGGTGAGGAAAAGAAAAAGTT-----GTATCTTTTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     843651 39 +   1495729 GACGGTACGGTGAGGAAAAGAAAAAGTT-----GTATCTTTTCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      66790 43 -    811324 GACGGTACGGTGAGGAAAAGAAAAAGTTGT-CAGTATCTTTTCC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30097307 43 -  71996105 GACGGTACGGTGAGGAAAAGAAAAAGTTGT-CAGTATCTTTTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     104101 43 +    779361 GACGGTACGGTGAGGAAAAGAAAAAGTTGT-CAGTATCTTTTCC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     767521 43 -   1829203 GACGGTACGGTGAAGAAAAGAAAACGTTGT-CAGTATCTTTTCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30928101 39 + 171630274 GACGGTACGGTGAGGAAAAGAAAAAGTT-----TTGTCTTTTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            99720 39 -    750284 AACGGTACGGTGAGGAAAAGAAAAAGTT-----TTATCTTCTCC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1347682 39 -   1771730 GACGGTACGGTGAGGAAAAGAAAAAGTT-----TTATCTTTTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      46702 34 -    566255 GACGGTACGGTGAG-----GAAAAAGTT-----TTATCTTTTCC
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           712755 39 +  18854210 ---AGCACTGTAAGGAAAAGAAAAAATTGT-CAGCATCCTTCC-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59008603 37 -  94987271 -GCAGCACTGTGAGG-----AAAGAGCTGT-TAGAGACCTCTGT
i mm10.chr17               C 0 C 0
s canFam3.chr12              384992 40 +  72498081 AACTAT---GTAAGGGAAAGAGAAAGCTGTAAAATACCCTTCC-
i canFam3.chr12            C 0 C 0
e micMur3.chr6               661723 24 + 123392446 I
e proCoq1.NW_012149775v1     693288 24 -   1411461 I

a score=1216636.000000
s hg38.chr6_GL000254v2_alt  1901974 79 +   4827813 TGCATTATCCCCTTTGATTGAATATC-------TACTTTTTGCAAACCCTGAAACAGCTTTGCAGAAAAAAGGGCAGATAGATGGG
s panTro5.chr6             30747646 79 + 175400573 TGCATTATCCCCTTTGATTGAATATC-------TACTTTTTGCAAACCCTGAAACAGCTTTGCAGAAAAAAGGGCAGATAGATGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31171275 79 + 173848474 TGCATTATCCCCTTTGATTGAATATC-------TACTTTTTGCAAACCCTGAAACAGCTTTGCAGAAAAAAGGGCAGATAGATGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     678264 79 +   2037526 TGCATTATCCCCTTTGATTGAATATC-------TACTTTTTGCAAACCCTGAAACAGCTTTGCAGAAAAAAGGGCAGATAGATGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75346896 79 + 122973662 TGCATTATCACCTTTGATTGAATATC-------TACTTTTTGCAAACCCTGAAACAGCTTTGCAGAAAAAAGGGCAGATAGATGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31258399 79 + 172585720 TGCATTATCGCCTTTGATTGAATATC-------TACTTTTTGCAAACCCTGAAACAGCTTTGCAGAAAAAAGAGCAGATAGATGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30547407 79 - 170955103 TGCATTATCGCCTTTGATTGAATATC-------TACTTTTTGCAAACCCTGAAACAGCTTTGCAGAAAAAAGAGCAGATAGATGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     843690 79 +   1495729 TGCATTATCGCCTTTGATTGAATATC-------TACTTTTTGCAAACCCTGAAACAGCTTTGCAGAAAAAAGAGCAGATAGATGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      66833 79 -    811324 TGCATTATCGCCTTTGATTGAATATC-------TACTTTTTGCAAACCCTGAAACAGCTTTGCAGAAAAAAGAGCAGATAGATGGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30097350 79 -  71996105 TGCATTATCGCCTTTGATTGAATATC-------TACTTTTTGCAAACCCTGAAACAGCTTTGCAGAAAAAAGAGCAGATAGATGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     104144 79 +    779361 TGCATTATCGCCTTTGATTGAATATC-------TACTTTTTGCAAACCCTGAAACAGCTTTGCAGAAAAAAGAGCAGATAGATGGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     767564 79 -   1829203 TGCATTATCCCCTTTGATTGAATATC-------TACTTTTTGCAAACCCTGAAACAGCTTTGCAGAAAAAAGGGCAGATAGATGGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30928140 78 + 171630274 TGCATTATCCCCTTTGATTGAATATC-------TACTCTTTGCAAACCC-GAAACAGCTTTGCAGAAAAAAGCGCAGGTAGATGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            99759 78 -    750284 TGCATTATCCCCTTTGATTGAATATC-------TACTTTTTGCAAACCCTGAAACAGCTTTGCAGAAAAAAGCGCAGGTAGAT-GG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1347721 79 -   1771730 TGCATTATCCCCTTTGATTGAATATC-------TACTTTTTGCAAACCCTGAAACAGCTTTGCAGAAAAAAGCGCAGGTAGATGGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      46736 79 -    566255 TGCATTATCCCCTTTGATTGAATATC-------TACTTTTTGCAAACCCTGAAACAGCTTTGCAGAAAAAAGCGCAGGTAGATGGG
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               661747 79 + 123392446 TGCATTATCTGCTTTGACTGAGTCTC-------CACTTTTTGCAAACCCTGAAAGAGCTTTGCAGAATAAAGGGCAGAGAGATGGG
i micMur3.chr6             I 24 C 0
s proCoq1.NW_012149775v1     693312 79 -   1411461 TGCATTATCTGCTTTGACTGAGTCTC-------TACTTTTTGCAAACCCGGAAAGAGCTTTGCAGAAAAAAGGGCAGAGAGATGGG
i proCoq1.NW_012149775v1   I 24 I 242
s otoGar3.GL873550           712794 79 +  18854210 CACATTACCTGCTTTGACTGAGTCTC-------CACTTTTTGCAAACCCTAAAAGAACTTTGCAGAAAAAAGGGCAGAGAGATGGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59008640 54 -  94987271 -------TACCCTCTGATGG-------------------------ACTCTCAAACAACTCTGCAGAGGGACGGGCAGATGGACGGG
i mm10.chr17               C 0 C 0
s canFam3.chr12              385032 86 +  72498081 CGTAGTATCCTCCTTGCTTGAGTCTCCTTTTTTTTTTTTTTGCGAACTTCAAAAACGCTTTGCAAAGGAAAGAGCAGGCAGATGGG
i canFam3.chr12            C 0 C 0

a score=1070991.000000
s hg38.chr6_GL000254v2_alt  1902053 83 +   4827813 GTGAGAACTCCCAAGACTGCTGAAAATATACCTGACTTTACTGGTTgaattaagaaataagtaatacaagaaaaacacctaag
s panTro5.chr6             30747725 78 + 175400573 GTGAGAACTCCTAAGACTGCTGAAAATATACCTGACTTTACTGGTTG-ATTAAG----AAGTAATACAAGAAAAACACCTAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31171354 78 + 173848474 GTGAGAACTCCTAAGACTGCTGAAAATATACCTGACTTTACTGGTTG-ATTAAG----AAGTAATACAAGAAAAACACCTAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     678343 83 +   2037526 GTGAGAACTCCTAAGACTGCTGAAAATATACCTGACTTTACTGGTTgaattaagaaataagtaatacaagaaaaacacctaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75346975 83 + 122973662 GTGAGAACTCCTAAGACTGCTGAAAATATACCTGACTTTACTGGTTGAATTAAGAAATGAGTAATACAAGAAAAACACCTAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31258478 83 + 172585720 GTGAGAACTCCTAAGACTGCTGAAAATATACCTGCCTTTACTGGTTGAATTAAGAAATGAGTAATACAAGAAAAACGCCTAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30547486 83 - 170955103 GTGAGAACTCCTAAGACTGCTGAAAATATACCTGACTTTACTGGTTGAATTAAGAAATGAGTAATACAAGAAAAACGCCTAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     843769 83 +   1495729 GTGAGAACTCCTAAGACTGCTGAAAATATACCTGCCTTTACTGGTTGAATTAAGAAATGAGTAATACAAGAAAAACGCCTAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      66912 83 -    811324 GTGAGAACTCCTAAGACTGCTGAAAATATACCTGACTTTACTGGTTGAATTAAGAAATGAGTAATACAAGAAAAACGCCTAAG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30097429 83 -  71996105 GTGAGAACTCCTAAGACTGCTGAAAATATACCTGACTTTACTGGTTGAATTAAGAAATGAGTAATACAAGAAAAACGCCTAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     104223 83 +    779361 GTGAGAACTCCTAAGACTGCTGAAAATATACCTGACTTTACTGGTTGAATTAAGAAATGAGTAATACAAGAAAAACGCCTAAG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     767643 83 -   1829203 GTGAGAACTCCTAAGACTGCTGAAAATATACCTGACTTTACTGGTTGAATTAAGAAATGAGTAATACAAGAAAAACGCCTAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30928218 83 + 171630274 GTGAGAACTCCTAAGACTGCTGAAAATATACCTGACTTTACTGGTTGAATTAAGAAATGAGTAATAGAAGAAAAACACCTAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            99837 83 -    750284 GTGAGAACTCCTAGGACTGCTAAAAATATACCTGACTTTACTAGTTGAATTAAGAAATGAGTAATACAAGAAAAACACCTAAG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1347800 83 -   1771730 GCGAGAACTCCTAAGACTGCTGAAAATATACCTGACTTTACTAGTTGAATTAAGAAATGAGTAATACAAGAAAAACACCTAAG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      46815 83 -    566255 GTGAGAACTCCTAAGACTGCTGAAAATATACCTGACTTTACTGGTTGAATTAAGAAATGAGTAATACAAGAAAAACACCTAAG
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               661826 63 + 123392446 --------------------TGAGAATATGCCTAACTTTACTGGTTGAATTAAGCAATGAATAATAAAAGAAAAACACCTAAG
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           712873 64 +  18854210 -------------------GTGAAAATATGCTGAACTTTACTGGTTGAATTAAGAAATGAATAATAAAAGAAAAATATGTAAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59008694 75 -  94987271 GTGAGAGTTTGCGGCACTGCTGAGTGGATATATGACTTACCTGG-----TTAAAAACTGAGTGTTATAAG---ACCACGTAAG
i mm10.chr17               C 0 C 0
s canFam3.chr12              385118 73 +  72498081 CTGAGAATTTGTAACGCTACTGAGAATATATCTGCCATTACTGATCGGATTAAGGAATGAGTAGT---AGAAAAAC-------
i canFam3.chr12            C 0 C 0
e proCoq1.NW_012149775v1     693391 242 -   1411461 I

a score=56780.000000
s hg38.chr6_GL000254v2_alt  1902136 3 +   4827813 aaC
s panTro5.chr6             30747803 3 + 175400573 AAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31171432 3 + 173848474 AAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     678426 3 +   2037526 aaC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75347058 3 + 122973662 AAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31258561 3 + 172585720 AAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30547569 3 - 170955103 AAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     843852 3 +   1495729 AAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      66995 3 -    811324 AAC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30097512 3 -  71996105 AAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     104306 3 +    779361 AAC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     767726 3 -   1829203 AAC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30928301 3 + 171630274 AAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            99920 3 -    750284 AAC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1347883 3 -   1771730 AAC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      46898 3 -    566255 AAC
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               661889 3 + 123392446 AAC
i micMur3.chr6             C 0 I 318
s proCoq1.NW_012149775v1     693633 3 -   1411461 aaC
i proCoq1.NW_012149775v1   I 242 C 0
s otoGar3.GL873550           712937 3 +  18854210 AAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59008769 3 -  94987271 GAC
i mm10.chr17               C 0 C 0
s canFam3.chr12              385191 3 +  72498081 AAC
i canFam3.chr12            C 0 C 0

a score=33991.000000
s hg38.chr6_GL000254v2_alt  1902139 2 +   4827813 AG
s panTro5.chr6             30747806 2 + 175400573 AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31171435 2 + 173848474 AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     678429 2 +   2037526 AG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75347061 2 + 122973662 AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31258564 2 + 172585720 AG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30547572 2 - 170955103 AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     843855 2 +   1495729 AG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      66998 2 -    811324 AG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30097515 2 -  71996105 AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     104309 2 +    779361 AG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     767729 2 -   1829203 AG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30928304 2 + 171630274 AG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            99923 2 -    750284 AG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1347886 2 -   1771730 AG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      46901 2 -    566255 AG
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     693636 2 -   1411461 AG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           712940 2 +  18854210 AG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59008772 1 -  94987271 -G
i mm10.chr17               C 0 I 1
s canFam3.chr12              385194 2 +  72498081 AG
i canFam3.chr12            C 0 C 0
e micMur3.chr6               661892 318 + 123392446 I

a score=3510793.000000
s hg38.chr6_GL000254v2_alt  1902141 212 +   4827813 --AATCATCAGTCCTTTAATCCATTCTGATGACCATATTTTCATGTCTGCTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAACCTGGCGACCCTAAGTCAGGTGAGGAGGAA-GGGGCCCTGATCCTTGTATTAGGTCGTAGAGAAGACAGC---AAGGGAGGGGATAAAACCCAGGAAGGACTTAAAAAT-AAAAGATCA
s panTro5.chr6             30747808 212 + 175400573 --AATCATCAGTCCTTTAATCCATTCTGATGACCATATTTTCATGTCTGCTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAACCTGGCGACCCTAAGTCAGGTGAGGAGGAA-GGGGCCCTGATCCTTGTATTAGGTCGTAGAGAAGACAGC---AAGGGAGGGGATAAAACCCAGGAAGGACTTAAAAAT-AAAAGATCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31171437 212 + 173848474 --AATCATCAGTCCTTTAATCCATTCTGATGACCATATTTTCATGTCTGCTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAACCTGGCGACCCTAAGTCAGGTGAGGAGCAA-GGGGCCCTGATCCTTGTATTAGGTCGTAGAGAAGACAGC---AAGGGAGGGGATAAAACCCAGGAAGGACTTAAAAAT-AAAAGATCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     678431 209 +   2037526 --AATCATCAGTCCTTTAATCCATTCTGATGACCATATTTTCATGTCTGCTCTTAGGACCACCCAGCCTTCTGGGCCCT-CCCCCATGGCCAATGGAAAACCTGGCGACCCTAAGTCAGGTGAGGAGGAA-GGGGCCCTGATCCTTGTATTAGGTCGTAGAGAAGACAGC---AAGGGA-GGGATAAAA-CCAGGAAGGACTTAAAAAT-AAAAGATCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75347063 213 + 122973662 --AATCATCAGTCCTTTAATCCATTCTGATGACCATATTTTCATGTCTGCTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAACCTGGCGACCCTAAGTCAGGTGAGGAGGAA-GGGGCCCTGATCCTTGTATTAGGTAGTAGAGAAGACAGC---AAGGGAGGGGATAAAACCCAGGAAGGACTTAAAAATCAAAAGATCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31258566 213 + 172585720 --AATCATCAGTCCTTGAATCCATTCTGATGACCATATTTTCATGTCTGCTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAACCTGGCGACCCTAAGTCAGGTGAGGAGGAA-GGGGCCCTGATCCTTGTATTAGGTCGCGGATAAGACGGC---AAGGGAGGGGATAAAACCCAGGAAGGACTTAAAAATCAAAAGGTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30547574 213 - 170955103 --AATCATCAGTCCTTTAATCCATTCTGATGACCATATTTTCATGTCTGCTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAACCTGGCGACCCTAAGTCAGGTGAGGAGGAA-GGGGCCCTGATCCTTGTATTAGGTCGCGGATAAGACGGC---AAGGGAGGGGATAAAACCCAGGAAGGACTTAAAAATCAAAAGGTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     843857 213 +   1495729 --AATCATCAGTCCTTGAATCCATTCTGATGACCATATTTTCATGTCTGCTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAACCTGGCGACCCTAAGTCAGGTGAGGAGGAA-GGGGCCCTGATCCTTGTATTAGGTCGCGGATAAGACGGC---AAGGGAGGGGATAAAACCCAGGAAGGACTTAAAAATCAAAAGGTCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      67000 213 -    811324 --AATCATCAGTCCTTTAATCCATTCTGATGACCATATTTTCATGTCTGCTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAACCTGGCGACCCTAAGTCAGGTGAGGAGGAA-GGGGCCCTGATCCTTGTATTAGGTCGTGGATAAGACAGC---AAGGGAGGGGATAAAACCCAGGAAGGACTTAAAAATCAAAAGATCA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30097517 213 -  71996105 --AATCATCAGTCCTTTAATCCATTCTGATGACCATATTTTCATGTCTGCTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAACCTGGCGACCCTAAGTCAGGTGAGGAGGAA-GGGGCCCTGATCCTTGTATTAGGTCGCGGATAAGACAGC---AAGGGAGGGGATAAAACCCAGGAAGGACTTAAAAATCAAAAGATCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     104311 213 +    779361 --AATCATCAGTCCTTTAATCCATTCTGATGACCATATTTTCATGTCTGCTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAACCTGGCGACCCTAAGTCAGGTGAGGAGGAA-GGGGCCCTGATCCTTGTATTAGGTCGCGGATAAGACAGC---AAGGGAGGGGATAAAACCCAGGAAGGACTTAAAAATCAAAAGATCA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     767731 213 -   1829203 --AATCATCAGTCCTTTAATCCATTCTGATGACCATATTTTCATGTCTGCTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAACCTGGCGACCCTAAGTCAGGTGAGGAGGAA-GGGGCCCTGATCCTTGTATTAGGTCGCGGATAAGACAGC---AAGGGAGGGGATAAAACCCAGGAAGGACTTAAAAATCAAAAGATCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30928306 213 + 171630274 --AATCATCAGTCCCTTAATCCATTCTGATGACCGTATTTTCATGTCTGCTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAACCTGGTGACCCTAAGTCAGGTGAGGAGGAA-GGGGCCCTGATCCTTGTATTAGGTCGTGGAGAAGAGagc---aagggaggggataaaacccagaaaggacttaaaaatcaaaagatca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            99925 213 -    750284 --AATCATCAGTCCCTTAATCCATTCTGATGACCATATTTTCATGTCTGCTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAACCTGGTGACCCTAAGTCAGGTGAGGAGGAA-GGGGCCCTGATCCTTGTATTAGGTTGTGGAGAAGAGAGC---AAGGGAGGGGATAAAACCCAGAAAGGACTTAAACAtcaaaagatca
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1347888 213 -   1771730 --AATCATCAGTCCCTTAATCCATTTTGATGACCATATTTTCATGTCTGCTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAACCTGGTGACCCTAAGTCAGGTGAGGAGGAA-GGGGCCCTGATCCTTGTATTAGGTCGTGGAGAAGAGAGC---AAGGGAGGGGATAAAACCCAGAAAGGACTTAAAAATCAAAAGATCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      46903 213 -    566255 --AATCATCAGTCCCTTAATACATTCTGATGACCATATTTTCATGTCTGCTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAACCTGGTGACCCTAAGTCAGGTGAGGAGGAA-GGGGCCCTAATCCTTGTATTAGGTCGTGGAGAAGAGAGC---AAGGGAGGGGATAAAACCCAGAAAGGACTTAAAAATCAAAAGATCA
i aotNan1.NW_018511496v1   C 0 I 3559
s micMur3.chr6               662210 204 + 123392446 --AATCATCAGTCATTTAATCCATTAGGATGACCATATTTTCATGTCTACTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAACCTGGTGATTCCAAGACAGGTGAGGAAGAA-GGGGCCCTGATCC--GTTGTAGGTCCTGGAGAAGGGATC---AAAGGAGGGAGTAAAACCCAGGAAGGACTTAAAAC-------ATCA
i micMur3.chr6             I 318 C 0
s proCoq1.NW_012149775v1     693638 210 -   1411461 --CATCATCAGTCCTTTAATTCATTACGATGACCATATTTTCATGTCTACTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAGCCTGGTGATCCCAAGTCAGGTGAGGAGGAA-GGGGCCCTGATCC--GTGTTAGGTCCTGGAGAAGGGAAC---AAGGGAGGGAGTAAAACCAAGGAAGGACTTAAAATC-aaaagatca
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           712942 203 +  18854210 --GATCATCACTCCTTTAATCCATTTTGATGACCATGTTTTCATGTCTACTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAGCCTGGTGATCCCAAGTCAGGTGAGGAGGAA-GGGGCTTTGATCC--ATGTTAGGTCCTGGAGAAGGGAAT----AGGGAGGGAGTAAAACCCAGGAAGGACTTAAAAG-------ATCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59008774 196 -  94987271 --GGTGATCAGTCCTTTGCACCGTTCTGATGGCTGTTTTCTCACGTCTGCTCTTAGGACCACCCAGCCTTCTGGGCCCTCCCCCCATGGCTAACGGGAAGCCTGGTGATCCCAAGTCAGGTGAGGAGAAATTGGGCCCTGATTCATGTTTTAAGCCCTGGAGAA----------------GGGATGGACCCC--TAAAGACTTAAA---CAAAAGCCCA
i mm10.chr17               I 1 C 0
s canFam3.chr12              385196 217 +  72498081 GATTTTACCAGTACCTGAGTCCATTCTGGTGACTATATTTTTATGTCTACTCTTAGGACCACCTAGCCTTCTGGGCCCTCCCCCCATGGCCAATGGAAAGCCTGGTGATCCCAAGTCAGGTGAGGACAAG-GGGGCTCTGATTCTTTGATTAGGTCCTGGAGAAGGGGGGGCGGCGGGAGGGACTAAAACCCAGTAAGAACTTAAAACC-AAAAGATCA
i canFam3.chr12            C 0 C 0

a score=897119.000000
s hg38.chr6_GL000254v2_alt  1902353 65 +   4827813 GGGAT--TCCATCcctaaatgaatggagagaagttgtatatttgctgatttaaaaactcaatgt-----tgt
s panTro5.chr6             30748020 65 + 175400573 GGGAT--TCCATCcctaaatgaatggagagaagttgtatatttgctgatttaaaaactcaatgt-----tgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31171649 65 + 173848474 GGGAT--TCCATCcctaaatgaatggagagaagttgtatatttgctgatttaaaaactcaatgt-----tgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     678640 65 +   2037526 GGGAT--TCCATCcctaaatgaatggagagaagttgtatatttgctgatttaaaaactcaatgt-----tgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75347276 65 + 122973662 GGGAT--TCCATCcctaaatgaatggagagaagttgtatatttgctgatttaaaaactcaatgt-----tat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31258779 65 + 172585720 GGGAT--TCCATCcctaaatgaatggagagaagttgtatatttgctgactgaaaaactcaatgt-----tgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30547787 65 - 170955103 GGGAT--TCCATCcctaaatgaatggagagaagttgtatatttgctgactgaaaaactcaatgt-----tgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     844070 65 +   1495729 GGGAT--TCCATCcctaaatgaatggagagaagttgtatatttgctgactgaaaaactcaatgt-----tgt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      67213 65 -    811324 GGGAT--TCCATCcctaaatgaatggagagaagttgtatatttgctgactgaaaaactcaatgt-----tgt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30097730 65 -  71996105 GGGAT--TCCATCcctaaatgaatggagagaagttgtatatttgctgactgaaaaactcagtgt-----tgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     104524 65 +    779361 GGGAT--TCCATCcctaaatgaatggagagaagttgtatatttgctgactgaaaaactcaatgt-----tgt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     767944 65 -   1829203 GGGAT--TCCATCcctaaatgaatggagagaagttgtatatttgctgactgaaaaactcaatgt-----tgt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30928519 65 + 171630274 gggat--tccatacctaaatgaatggagaaaagttgtatatttgctgattgaaaaactcgatgt-----tgt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           100138 65 -    750284 gggat--tccataccaaaatgaatggagagaagttgtatatttgctgattggaaaactcaatgt-----tgt
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1348101 65 -   1771730 GGGAT--TCCATacctaaatgaatggacagaagttgtatatttgctgattggaaaactcaatgt-----tgt
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               662414 62 + 123392446 GGGAT--TCTATacctaaatgaatggagagaagttgtatatttgcagattggaaaactcaa--------tgt
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     693848 65 -   1411461 gagat--tctatacctaaatgaatggagagaagttgtatatttgcagattagaaaactaaatgt-----tgt
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           713145 70 +  18854210 GGGAT--TTTGTacccaaatgaatggaaagaagttgtatatttacagattggaaaacaaaatgtaaaaatgt
i otoGar3.GL873550         C 0 I 270
s mm10.chr17               59008970 59 -  94987271 GGGATTGTGTGTACCTAAATG-------AGGGATCATATATTAACCG-TTTGGAAATACGGTGT-----TGT
i mm10.chr17               C 0 C 0
s canFam3.chr12              385413 65 +  72498081 GGGAT--TCTGTacgtaaatggatagaaagatgttgtatattcacaggttggaaagctcaatat-----tgc
i canFam3.chr12            C 0 C 0
e aotNan1.NW_018511496v1      47116 3559 -    566255 I

a score=309268.000000
s hg38.chr6_GL000254v2_alt  1902418 20 +   4827813 aaaaatgtcac-ttcttccca
s panTro5.chr6             30748085 20 + 175400573 aaaaatgtcac-ttcttccca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31171714 20 + 173848474 aaaaatgtcac-ttcttccca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     678705 20 +   2037526 aaaaatgtcac-ttcttccca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75347341 20 + 122973662 aaaaatgtcac-ttcttccca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31258844 20 + 172585720 aaaaatgtcac-ttcttccca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30547852 20 - 170955103 aaaaatgtcac-ttcttccca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     844135 20 +   1495729 aaaaatgtcac-ttcttccca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      67278 20 -    811324 aaaaatgtcac-ttcttccca
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30097795 20 -  71996105 aaaaatgtcac-ttcttccca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     104589 20 +    779361 aaaaatgtcac-ttcttccca
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     768009 20 -   1829203 aaaaatgtcac-ttcttccca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30928584 20 + 171630274 taaaatgtcac-ttcttccca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           100203 20 -    750284 aaaaatgtcac-ttcttccca
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1348166 20 -   1771730 aaaaatgttac-ttcttccca
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               662476 20 + 123392446 aaaaatgtcac-ttcttccca
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     693913 20 -   1411461 aaaaatgtcac-ttcttccca
i proCoq1.NW_012149775v1   C 0 I 3335
s otoGar3.GL873550           713485 20 +  18854210 agaaaagtcac-ttctcccca
i otoGar3.GL873550         I 270 C 0
s mm10.chr17               59009029 21 -  94987271 CAAAATGTTACTTTCCTTCCA
i mm10.chr17               C 0 C 0
s canFam3.chr12              385478 20 +  72498081 aaaaatgtcac-ttataatca
i canFam3.chr12            C 0 C 0
e aotNan1.NW_018511496v1      47116 3559 -    566255 I

a score=90817.000000
s hg38.chr6_GL000254v2_alt  1902438 7 +   4827813 aattgat
s panTro5.chr6             30748105 7 + 175400573 aattgat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31171734 7 + 173848474 aattgat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     678725 7 +   2037526 aattgat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75347361 7 + 122973662 aattgat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31258864 7 + 172585720 aattgat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30547872 7 - 170955103 aattgat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     844155 7 +   1495729 aattgat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      67298 7 -    811324 aattgat
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30097815 7 -  71996105 aattgat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     104609 7 +    779361 aattgat
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     768029 7 -   1829203 aactgat
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30928604 7 + 171630274 aactgat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           100223 7 -    750284 acctgat
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1348186 7 -   1771730 aactgat
i cebCap1.NW_016107755v1   C 0 C 0
s micMur3.chr6               662496 7 + 123392446 gattgat
i micMur3.chr6             C 0 I 3517
s otoGar3.GL873550           713505 7 +  18854210 aattgat
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59009050 7 -  94987271 GATTAAC
i mm10.chr17               C 0 C 0
s canFam3.chr12              385498 7 +  72498081 aattgat
i canFam3.chr12            C 0 C 0
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e aotNan1.NW_018511496v1      47116 3559 -    566255 I

a score=1425794.000000
s hg38.chr6_GL000254v2_alt  1902445 140 +   4827813 aaacagatttcatgca-ttccaagtcagaacacccataatgtttttgtggaaat--aca-----catt-------attatagggaaatgcaaaatatcaaggc----gactatcaagacaatcttgaagtgggagggcttactatgaatatcaagattt
s panTro5.chr6             30748112 140 + 175400573 aaatagatttcatgca-ttccaagtcagaacacccataatgtttttgtggaaat--aca-----catt-------attatagggaaatgcaaaatatcaaggt----gactgtcaagacaatcttgaagtgggagggcttactatgaatatcaagattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31171741 140 + 173848474 aaatagatttcatgca-ttccaagtcagaacacccataatgtttttgtggaaat--aca-----catt-------attatagggaaatgcaaaatatcaaggt----gactgtcaagacaatcttgaagtgggagggcttactatgaatatcaagattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     678732 140 +   2037526 aaatagatttcatgca-ttccaagtcagaacacccataatgtttttgtggaaat--aca-----catt-------attatagggaaatgcaaaatatcaaggt----gactgtcaagacaatcttgaagtgggagggcttactatgaatatcaagattt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75347368 144 + 122973662 aaatagattttataca-ttccaagtcagaacacccataatgtttttgtggaaat--aca-----catt-------attatagggaaatgcaaaatatcaaggtgagagactgtcaagacaatcttgaagtgggagggcttactatgaatatcaagattt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31258871 144 + 172585720 gtatagacttcatgca-ttccaagtcagaacacccataatgtttttgtggaaat--aca-----cagt-------attatagggaaatgcaaaatatcaaggtgagagactgtcaaaacaatcttgaaGTGGGAGGGCGTACTATGaatatcaagattt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30547879 144 - 170955103 gtatagacttcatgca-ttccaagtcagaacacccataatgtttttgtggaaat--aca-----cagt-------attatagggaaatgcaaaatatcaaggtgagagactgtcaaaacaatcttgaagtgggagggcgtactatgaatatcaagattt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     844162 144 +   1495729 gtatagacttcatgca-ttccaagtcagaacacctataatgtttttgtggaaat--aca-----cagt-------attatagggaaatgcaaaatatcaaggtgagagactgtcaaaacaatcttgaaGTGGGAGGGCGTACTATGaatatcaagattt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      67305 144 -    811324 gtatagacttcatgca-ttccaagtcagaacacccataatgtttttgtggaaat--aca-----cagt-------attatagggaaatgcaaaatatcaaggtgagagactgtcaaaacaatcttgaagtgggagggcgtactatgaatatcaagattt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30097822 144 -  71996105 gtatagacttcatgca-ttccaagtcagaacacccataatgtttttgtggaaat--aca-----cagt-------attatagggaaatgcaaaatatcaaggtgagagactgtcaaaacaatcttgaagtgggagggcgtactatgaatatcaagattt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     104616 144 +    779361 gtatagacttcatgca-ttccaagtcagaacacccataatgcttttgtggaaat--aca-----cagt-------attatagggaaatgcaaaatatcaaggtgagagactgtcaaaacaatcttgaagtgggagggcgtactatgaatatcaagattt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     768036 144 -   1829203 gtatagacttcatgca-ttccaagtcagaacacccataatgtttttgtggaaat--aca-----catt-------attatagggaaatgcaaaatatcaaggtgagagactatcaaaacaatcttgaagtgggagggcgtactatgaatatcaagattt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30928611 144 + 171630274 gtatagatttcatgca-ttccaagccagaatatctacagtgtttttgtagaaat--aca-----catt-------tttatagggaaatgcaaaatatcaaggtgagagactgtcaagatgatcttgaagtgggaaggcttgctatgaatatcaagattt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           100230 137 -    750284 gtacagatttcatgca-ttccaagccagaacatctacagtgtttttgtaaaaat--aca-----catt-------tttatagggatatgcaaaatatcaaggtgagagactgtcaagac-------aagtgggaaggcttgctatgaatatcaagattt
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1348193 144 -   1771730 gtacagatttcatgca-ttccaagccagaacatctacagtgtttttgtagaaac--aca-----catt-------tttatagggaaatgcaaaatatcaaggtgagagactgtcaagacaatcttgaagtgggaaggcttgctatgaatatcaagattt
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           713512 152 +  18854210 gtatagatataatgcatttcccactcagcgctcttatagtcactttgtggaaatcaacattctgcatt-------gttacatggatatgcaaagtatcacagtgagagactgtcaagataatcttgaagtgggagggcttattctgcatatcaggactt
i otoGar3.GL873550         C 0 I 139
s mm10.chr17               59009057 103 -  94987271 -----------------TCCTAGGTCTG-----TCTTTATTTGTGTGTAGAAAT--AAA-----TGTTCT---CCATTATAGAGGC----------TCTAAATGGGACACTACCAAGACCA-----AAGTGAGAGGGC---------ATAGCAAGATTT
i mm10.chr17               C 0 I 4
s canFam3.chr12              385505 142 +  72498081 ctatagattcagtgca-ttcccagtgacgatccccataatg--------gaaat--aaa-----cattctatgttattatgtggacatgcaaaggatcaggctaagagactgcaaatacggtcttgaggtaggaggacttact-tgactatcatgattt
i canFam3.chr12            C 0 C 0
e micMur3.chr6               662503 3517 + 123392446 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e aotNan1.NW_018511496v1      47116 3559 -    566255 I

a score=176609.000000
s hg38.chr6_GL000254v2_alt  1902585 18 +   4827813 gtaagctg----------ggcatggtgg
s panTro5.chr6             30748252 18 + 175400573 gtaagctg----------ggcatggtgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31171881 18 + 173848474 gtaagctg----------ggcatggtgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     678872 18 +   2037526 gtaagctg----------ggcatggtgg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75347512 18 + 122973662 gtaagctg----------ggcatggtgg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31259015 18 + 172585720 gtaagctg----------ggcatggtgg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30548023 18 - 170955103 gtaagctg----------ggcatggtgg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     844306 18 +   1495729 gtaagctg----------ggcatggtgg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      67449 18 -    811324 gtaagctg----------ggcatggtgg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30097966 18 -  71996105 gtaagctg----------ggcatggtgg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     104760 18 +    779361 gtaagctg----------ggcatggtgg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     768180 18 -   1829203 gtaagctg----------ggcatggtag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30928755 18 + 171630274 gtaagctg----------ggcatggtgt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           100367 18 -    750284 ataagctg----------ggcatggtat
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1348337 18 -   1771730 ttaagctg----------cgcatggtat
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           713803 18 +  18854210 attagcca----------gatatggtag
i otoGar3.GL873550         I 139 C 0
s mm10.chr17               59009164 28 -  94987271 AAAAGCTGCAGTAGCTATGACATTGTGG
i mm10.chr17               I 4 I 118
e micMur3.chr6               662503 3517 + 123392446 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e canFam3.chr12              385647  0 +  72498081 C
e aotNan1.NW_018511496v1      47116 3559 -    566255 I

a score=1538930.000000
s hg38.chr6_GL000254v2_alt  1902603 206 +   4827813 cacacgcctgtagtcccagttactcaggaggctgaggtgcgagg--------atcctttgagcccaggagt----------------ttttgaggccact-------------ctgggcaacatagtgagatcctgtctctaaa----------------------------------tacaagaagaaaaaaagacttact------------------------------------------------------------------------------------------------------------------------------------------ataaagctacaatagttacaacgatgcagtttggaaacaatgatagacat--aagtcaataggacttatgtcccgaa
s panTro5.chr6             30748270 206 + 175400573 cacacgcctgtagtcccagttactcaggaggctgaggtgcgagg--------atcctttgagcccaggagt----------------ttttgaggccacc-------------ctgggcaacatagtgagatcctgtctctaaa----------------------------------tacaagaagaaaaaaagacttact------------------------------------------------------------------------------------------------------------------------------------------ataaagctacaatagttacaacgatgcagtttggaaacaatgatagacat--aagtcaacaggacttatgtcccgaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31171899 206 + 173848474 cacacgcctgtagtcccagttactcaggaggctgaggtgcgagg--------atcctttgagcccaggagt----------------ttttgaggccacc-------------ctgggcaacatagtgagatcctgtctctaaa----------------------------------tacaagaagaaaaaaagacttact------------------------------------------------------------------------------------------------------------------------------------------ataaagctacaatagttacaacgatgcagtttggaaacaatgatagacat--aagtcaacaggacttatgtcccgaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     678890 205 +   2037526 cacatgcctgtagtcccagttactcaggaggctgaggtgcgagg--------atcctttgagcccaggagt----------------ttttgaggccacc-------------ctgggcaacatagtgagatcctgtctctaaa----------------------------------tacaagaag-aaaaaagacttact------------------------------------------------------------------------------------------------------------------------------------------ataaagctacaatagttacaacgatgcagtttggaaacaatgatagacat--aagtcaacaggacttatgtcccgaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75347530 205 + 122973662 cacacgcctgtagtcccagttactcaggaggctgaggtaggagg--------atcctttgagcccaggagt----------------ttttgaggccacc-------------ctgggcaacatagtgagatcctgtctctaaaaa-------------------------------caacaagaagaaaaaaag----act------------------------------------------------------------------------------------------------------------------------------------------ataaagctacaatagttgcaacgatgcagtttggacacaatgatagacat--aagtcaacaagacttatgtcccgaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31259033 205 + 172585720 catatgcctgtggtcccagctactcaggaggctgaggtaggagg--------atcctttgagcccaggagt----------------ttttgaggccact--------------tgggcgacatagtgagatcctgtctataaa----------------------------------aacaagaaggaaaAaagacttact------------------------------------------------------------------------------------------------------------------------------------------ataaagctacagtagttacaacgatgcggtttggacacaatgatacacat--aagtcaacaggacttatgtcccgaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30548041 205 - 170955103 catatgcctgtggtcccagctactcaggaggctgaggtaggagg--------atcctttgagcccaggagt----------------ttttgaggccact--------------tgggcaacatagtgagatcctgtctataaa----------------------------------aacaagaaggaaaaaagacttact------------------------------------------------------------------------------------------------------------------------------------------ataaagctacagtagttacaacgatgcggtttggacacaatgatacacat--aagtcaacaggacttatgtcccgaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     844324 205 +   1495729 catatgcctgtggtcccagctactcaggaggctgaggtaggagg--------atcctttgagcccaggagt----------------ttttgaggccact--------------tgggcgacatagtgagatcctgtctataaa----------------------------------aacaagaaggaaaAaagacttact------------------------------------------------------------------------------------------------------------------------------------------ataaagctacagtagttacaacgatgcagtttggacacaatgatacacat--aagtcaacaggacttatgtcccgaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      67467 208 -    811324 catatgcctgtggtcccagctactcaggaggctgaggtaggagg--------atcctttgagcccaggagt----------------ttttgaggccact--------------tgggcaacatagtgagatcctgtctataaaaa-------------------------------caacaagaaggaaaaaagacttact------------------------------------------------------------------------------------------------------------------------------------------ataaagctacagtagttacaacgatgcggtttggacacaatgatagacat--aagtcaacaggacttatgtcccgaa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30097984 203 -  71996105 catatgcctgtggtcccagctactcaggaggctgaggtaggagg--------atcctttgagcccaggagt----------------ttttgaggccact--------------tgggcaacatagtgagatcctgtctataaaaa-------------------------------caacaagaaggaaaaaagact-----------------------------------------------------------------------------------------------------------------------------------------------taaagctacagtagttacaacgatgcggtttggacacaatgatagacat--aagtcaacaggacttatgttccgaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     104778 208 +    779361 catatgcctgtggtcccagctactcaggaggctgaggtaggagg--------atcctttgagcccaggagt----------------ttttgaggccact--------------tgggcaacatagtgagatcctgtctataaaaa-------------------------------caacaagaaggaaaaaagacttact------------------------------------------------------------------------------------------------------------------------------------------ataaagctacagtagttacaacgatgcggtttggacacaatgatagacat--aagtcaacaggacttatgtcccgaa
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     768198 208 -   1829203 catatggctgtggtcccagctactcaggaggctgaggtgggagg--------atcctttgagcccaggagt----------------ttttgaggccacc--------------tgggcaatatagtgagatcctgtctataagaa-------------------------------caacaagaaggaaaaaagatttact------------------------------------------------------------------------------------------------------------------------------------------ataaagctacagtagttacaacgatgcggtttggacacaatgatagacat--aagtcaacaggacttatgtcccaaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30928773 183 + 171630274 cacatgcctatagtcctagctactcaggagactgaagtgggagg--------atcgtttgaggccag-------------------------------cc--------------tgggctacatagtgagaccctgtctctaaaaa-------------------------------caaga-----gaaaaa-----gact------------------------------------------------------------------------------------------------------------------------------------------ataaagctataatagttacaacgatgcagtttggacacaattatagacat--aagtcaacaggacttaggtcctgaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           100385 193 -    750284 cacaggcctatagtcctagctagtcaggaggctgaagtgggagg--------atcatttgaggccag-------------------------------cc--------------tgagctacatagtgagatcctgtctctaaaaa-------------------------------caacaaCAAggaaaaaagactgact------------------------------------------------------------------------------------------------------------------------------------------ataaagctgtagtagttacaacgatgcagtttggatacaattatacacat--aagtcaacaggacttatgtcctgaa
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1348355 193 -   1771730 cacatgcctgtagtcctagctacttaggaggctgaagtgggagg--------atcgtttgaggccag-------------------------------cc--------------tgggctacatagtgagatcctgtctctaaaaa-------------------------------caacaacaagaaaaaaagactgcct------------------------------------------------------------------------------------------------------------------------------------------ataaagctatagtagttacaacgatgcagtttggacacaattatagacat--aagtcaacaggacctgtgtcctgaa
i cebCap1.NW_016107755v1   C 0 C 0
s otoGar3.GL873550           713821 409 +  18854210 tgtacacctgtagtcccagctactcagggggctgaggtgggaggttaggagtatcacttgagcacaagagttaaagattgcagtgaattatgatcacactgctgctctccagcctgggcaagagagcaaaatcctgtctcttaaaaaaaaaagaaaaagaaagaaagaaaaGAAAAGAAACAAAGAAAAAGAAAAACTTATTGTAAGCTACTCATCATGGCATGTACCTATAAGTCCCAGCTATCcaggaagattccttgggcctaggaatttgaggccagcctgggcaacatagtgagacccctatctcttaaaaaaaaaaaaatccaaaaaagatgtcacaaagttacaggggttatgac----tggtttgggcataatgacagacataaaagtcaacaggacaggg----taaa
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              385647  72 +  72498081 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ttcgaaaggctatagtagttattatggtgtggtattggcacaacaacaaacatataagtaaatag--------ccctgaa
i canFam3.chr12            C 0 C 0
e micMur3.chr6               662503 3517 + 123392446 I
e mm10.chr17               59009192 118 -  94987271 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e aotNan1.NW_018511496v1      47116 3559 -    566255 I

a score=1912373.000000
s hg38.chr6_GL000254v2_alt  1902809 198 +   4827813 ---gagtccaataacaggcccatacatgtgtggacacttcatttatgatgaagatggaactgaaaagttggtcttttcaataaatgatattggatcaattgga---tattcatgtg--aaaaaaatggaatttcaccttgcactcata--atcatatacaaagatctatttcaaatggactgtagatctaagtataaaaggtaagaga
s panTro5.chr6             30748476 198 + 175400573 ---gagtccaataacaggcccatacatgtgtggacacttcatttatgatgaagatggaactgaaaagttggtcttttcaataaatgatattggatcaattgga---tattcatgtg--aaaaaaatggaatttcaccttgcactcata--atcatatacaatgatctatttcaaatggactgtagatctaagtataaaaggtaagaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31172105 198 + 173848474 ---gagtccaataacaggcccatacatgtgtggacacttcatttatgatgaagatggaactgaaaagttggtcttttcaataaatgatattggatcaattgga---tattcatgtg--aaaaaaatggaatttcaccttgcactcata--atcatatacaaagatctatttcaaatggactgtagatctaagtataaaaggtaagaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     679095 198 +   2037526 ---gagtccaataacaggcccatacatgtgtggacacttcatttatgatgaagatggaactgaaaagttggtcttttcaataaatgatattggatcaattgga---tattcatgtg--aaaaaaatggaatttcaccttgcactcata--atcatatacaaagatctatttcaaatggactgtagatctaagtataaaaggtaagaga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75347735 198 + 122973662 ---gagtccaataacaggcccatacatgtgtggacacttcatttatgatgaagatggaactgaaaagttggtcttttcaataaatgatattggatcaattgga---tattcatgtg--aaaaaaatggaattccaccttgcactcata--atcatatacaaagatctatttcaaatggactgtagatctaagtataaaagttaagaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31259238 186 + 172585720 ---gagtccaataacaggcccatacatgtgtggacacttcatttatgatgaagatggaactggaaagttggtcttttcaataaatgatattggatcaattgga---tattcatgtt---aaaaaatggaatttcaccttgtagtcata--atcatat-------tgtat----aatggactgtagatctaagtataaaaggtaagaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30548246 186 - 170955103 ---gagtccaataacaggcccatacatgtgtggacacttcatttatgatgaagatggaactggaaagttggtcttttcaataaatgatattggatcaattgga---tattcatgtt---aaaaaatggaatttcaccttgtagtcata--atcatat-------tgtat----aatggactgtagatctaagtataaaaggtaagaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     844529 186 +   1495729 ---gagtccaataacaggcccatacatgtgtggacacttcatttatgatgaagatggaactggaaagttggtcttttcaataaatgatattggatcaattgga---tattcatgtt---aaaaaatggaatttcaccttgtagtcata--atcatat-------tgtat----aatggactgtagatctaagtataaaaggtaagaga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      67675 180 -    811324 ---gagtccaataacaggcccaaaca------ggcccatcatttatgatgaagatggaactggaaagttggtcttttcaataaatgatattggatcaattgga---tattcatgtt---aaaaaacggaatttcaccttgtagtcata--atcatat-------tgtat----aatggactgtagatctaagtataaaaggtaagaga
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30098187 186 -  71996105 ---gagtccaataacaggcccatacatgtgtggacacttcatttatgatgaagatggaactggaaagttggtcttttcaataaatgatattggatcaattgga---tattcatgtt---aaaaaatggaatttcaccttgtagtcata--atcatat-------tgtat----aatggactgtagatctaagtgtaaaaggtaagaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     104986 180 +    779361 ---gagtccaataacaggcccaaaca------ggcccatcatttatgatgaagatggaactggaaagttggtcttttcaataaatgatattggatcaattgga---tattcatgtt---aaaaaatggaatttcaccttgtagtcata--atcatat-------tgtat----aatggactgtagatctaagtataaaaggtaagaga
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     768406 186 -   1829203 ---gagtccaataacaggccgatacatgtgtggacacttcatttatgatgaagatggaactggaaagttggtcttttcaataaatgatattggatcaattgga---tattcatgtt---aaaaaatggaatttcaccttgtagtcata--atcatat-------tgtat----aatggactgtagatctaagtataaaaggtaagaga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30928956 197 + 171630274 ---gactccaataacagacccatacatgtgtggacacttcctttatgatgaagatggaactgaaaagttggtcttttcaataaatgatactggatcacttgga---tattcatgt---aaaaaaatggaatttcaccttgcactcata--atcatatataaagatctatttcaaatggactgtagatttaagtataaaaggtaagaGA
i calJac3.chr4             C 0 I 6068
s saiBol1.JH378327           100578 199 -    750284 ---gactccagtaacagacccggacatgtgtggacacttcctttatgatgaagatggaactgaaaagttggtcttttcaataaacgatactggatcacttgga---tattcatgtg-aaaaaaaatggaatttcaccttacactcata--atcatatacaaagatctatttcaaatggactgtagatttaagtataaaaggtaagaGA
i saiBol1.JH378327         C 0 I 3918
s cebCap1.NW_016107755v1    1348548 199 -   1771730 ---gactccaataacagacccgtacatgtgtggacacttcctttatgatgaagatggaactgaaaagttggtcttttcaataaatgatactggatcacttgga---tattcatgtg-aaaaaaaatggaatttcaccttgcactcata--atcatatacaaagatctatttcaaatggactgtagatttaagtataaaaggtaagaGA
i cebCap1.NW_016107755v1   C 0 I 3423
s otoGar3.GL873550           714230 199 +  18854210 ---gattccaataacaagcccatgaatacatggatacttcagttatgatgaagatagaactgaaaagttacacttttcagtaaatgatgttggattagttgaa---tattcatgtggaaaaaaaatagaatttgacctaatactcat---accacatacaaatatcaaatccaagtagattgtatatctgtgtgtaaaagataaaaga
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59009310 187 -  94987271 ---GAGTGCAATCGGaggcctgtagatatatgaacacagaattctgtgtaaagatgaaatcaacgaagtggttctgtcagtaaacaaagttgtctcaattggactttttttgtgtg-taaaactatgaactttgactttgtaatagtcgtaccaaataaaaacaccaattctaagcagattgtaaa-------ataaa----------
i mm10.chr17               I 118 C 0
s canFam3.chr12              385719 191 +  72498081 aaaatgtccagtatcaggtctacacatacatagatatgtcatttatgatgaagatggagctgaaatagtggtcgtttcagtaaatgatgttgg-ttaattgga---t----atgtg---gggagatgaaatctgacct---attcgt---accatatgtaaacatcaactcggagtgaaccgtagatctaagtgttaaaggtaaagaa
i canFam3.chr12            C 0 C 0
e micMur3.chr6               662503 3517 + 123392446 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e aotNan1.NW_018511496v1      47116 3559 -    566255 I

a score=849327.000000
s hg38.chr6_GL000254v2_alt  1903007 120 +   4827813 ataattattctagaaagtaa---atgt---att------ttctaagagtagctaagagttcttaaacagacaagaaatgcacgtatacacactaaccata-------aaggaaag----------attgataaattgaactccgttaga
s panTro5.chr6             30748674 120 + 175400573 ataattattctagaaagtaa---atgt---att------ttctaagagtagctaagagttcttaaacagacaagaaatgcacgtatacacactaaccata-------aaggaaag----------attgataaattgaactccgttaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31172303 120 + 173848474 ataattattctagaaagtaa---atgt---att------ttctaagagtagctaagagttcttaaacagacaagaaatgcacgtatacacactaaccata-------aaggaaag----------attgataaattgaactccgttaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     679293 117 +   2037526 ataattattctagaaagtaa---atgt---att------ttctaagagtagctaagagttcttaaacagac---aaatgcacgtatacacactaaccata-------aaggaaag----------attgataaattgaactccgttaga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75347933 120 + 122973662 ataattattctagaaagtaa---atgt---att------ttctaagagtagttacaagttcttaaacagacaagaaatgcacatatacacactaaccata-------aaggaaag----------attgataaattgaactccgttaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31259424 120 + 172585720 ataattattctagaaagtaa---atgt---att------ttctaagagtagctaagagttcttaaacagataagaaatgtaggtatacacactaaccata-------aaggaaag----------attgataaattgaactccattaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30548432 120 - 170955103 ataattattctagaaagtaa---atgt---att------ttctaagagtagctaagagttcttaaacagacaagaaatgtaggtatacacactaaccata-------aaggaaag----------attgataaattgaactccattaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     844715 120 +   1495729 ataattattctagaaagtaa---atgt---att------ttctaagagtagctaagagttcttaaacagacaagaaatgtaggtatacacactaaccata-------aaggaaag----------attgataaattgaactccattaga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      67855 120 -    811324 ataattattctagaaagtaa---atgt---att------ttctaagagtagctaagagttcttaaacagacaagaaatgtaggtatacacactaaccata-------aaggaaag----------attgataaattgaactccgttaga
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30098373 120 -  71996105 ataattattctagaaagtaa---atgt---att------ttctaagaatagctaagagttcttaaacagacaagaaatgtaggtatacacactaaccata-------aaggaaag----------attgataaattgaactccgttaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     105166 120 +    779361 ataattattctagaaagtaa---atat---att------ttctaagagtagctaagagttcttaaacagacaagaaatgtaggtatacacactaaccata-------aaggaaag----------attgataaattgaactccgttaga
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     768592 120 -   1829203 ataattattctagaaagtaa---atgt---att------ttctaagagtagctaagagttcttaaacagacaagaaatgtaggtatacacactaaccata-------aaggaaag----------attgataaattgaactccgttaga
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           714429 122 +  18854210 ataattcttctagaaagtca---atgt---attgtcatggtcttagagtagcttagagttctt----agatatgaaataaacatatgcacactagccata-------aaggaaag----------agtgatagattgaactacattaga
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59009497 127 -  94987271 --cattcttataaaaagttaaccatgtctcatg------gtcttagagtaggtaagcgtttgtaaacag--------------cacacagaCCAGGCATACTGGCAGCAGGAAAGCTCAGAGTTCAGTGTTACCCTGGCCTATATAAGA
i mm10.chr17               C 0 C 0
s canFam3.chr12              385910  92 +  72498081 --------------aaatat---tttc---atg------gtcttagaagggataagagttctt----agacaagaa----------acacactaaccata-------aaggaaag----------atggataaactgaactacattaaa
i canFam3.chr12            C 0 I 25
e micMur3.chr6               662503 3517 + 123392446 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e saiBol1.JH378327           100777 3918 -    750284 I
e aotNan1.NW_018511496v1      47116 3559 -    566255 I
e cebCap1.NW_016107755v1    1348747 3423 -   1771730 I
e calJac3.chr4             30929153 6068 + 171630274 I

a score=66424.000000
s hg38.chr6_GL000254v2_alt  1903127 11 +   4827813 aaatat-----aaatt------
s panTro5.chr6             30748794 11 + 175400573 aaatat-----aaatt------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31172423 11 + 173848474 aaatat-----aaatt------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     679410 11 +   2037526 aaatat-----aaatt------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75348053 11 + 122973662 aaatat-----aaatt------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31259544 11 + 172585720 aaatat-----aaatt------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30548552 11 - 170955103 aaatat-----aaatt------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     844835 11 +   1495729 aaatat-----aaatt------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      67975 11 -    811324 aaatat-----aaatt------
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30098493 11 -  71996105 aaatat-----aaatt------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     105286 11 +    779361 aaatat-----aaatt------
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     768712 11 -   1829203 aaatat-----aaatt------
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           714551 11 +  18854210 aagtat-----aaact------
i otoGar3.GL873550         C 0 I 49
s mm10.chr17               59009624 22 -  94987271 CACTGTCTATAAAATTTAAAAG
i mm10.chr17               C 0 C 0
e micMur3.chr6               662503 3517 + 123392446 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e canFam3.chr12              386002 25 +  72498081 I
e saiBol1.JH378327           100777 3918 -    750284 I
e aotNan1.NW_018511496v1      47116 3559 -    566255 I
e cebCap1.NW_016107755v1    1348747 3423 -   1771730 I
e calJac3.chr4             30929153 6068 + 171630274 I

a score=796199.000000
s hg38.chr6_GL000254v2_alt  1903138 133 +   4827813 tgcggctggg-tacagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcgaatcacgaggtcagcagttcaagaccagcct-----gaccaacatggtgaaacccctgtctctact-aaaaatacaaa
s panTro5.chr6             30748805 133 + 175400573 tgtggctggg-tacagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtgaatcacgaggtcagcagttcaagaacagcct-----gaccaacatggtgaaacccctgtgtctact-aaaaatacaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31172434 133 + 173848474 tgtggctggg-tacagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtgaatcacgaggtcagcagttcaagaacagcct-----gaccaacatggtgaaacccctgtgtctact-aaaaatacaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     679421 133 +   2037526 tgcggctggg-tacagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcgaatcacgaggtcagcagttcaagaccagcct-----gaccaacatggtgaaacccctgtctctact-aaaaatacaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75348064 133 + 122973662 tgtggccggg-tacggtggctcacgcctgtaatcccagcactttgggaggccgagacgggcgaatcatgaggtcagcagttcaagaccagcct-----gaccaacatggtgaaacccctgtctctact-aaaaatacaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31259555 134 + 172585720 tgcggccagg-tgcagtggctcacacctgtaatcccagcactttgggaggccgaggcgggcgaatcacaaggtcaggagttcaagactggact-----gaccaacatagtgaaacccctatctctactaaaaaatacaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30548563 134 - 170955103 tgcggccagg-tgcagtggctcacacctgtaatcccagcactttgggaggccgaggcgggcgaatcacaaggtcaggagttcaagactggact-----gaccaacatagtgaaacccctatctctactaaaaaatacaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     844846 134 +   1495729 tgcggccagg-tgcagtggctcacacctgtaatcccagcactttgggaggccgaggcgggcgaatcacgaggtcaggagttcaagactagact-----gaccaacatagtgaaacccctatctctactaaaaaatacaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      67986 134 -    811324 tgcggccagg-tgcagtggctcacacctgtaatcccagcactttgggaggccgaggcgggcgaatcaggaggtcaggagttcaagactagact-----gaccaacatagtgaaacccctatctctactaaaaaatacaaa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30098504 134 -  71996105 tgcggccagg-tgcagtggctcacacctgtaatcccagcactttgggaggccgaggcgggcgaatcacgaggtcaggagttcaagactagact-----gactaacatagtgaaacccctatctctactaaaaaatacaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     105297 134 +    779361 tgcggccagg-tgcagtggctcacacctgtaatcccagcactttgggaggccgaggcgggcgaatcaggaggtcaggagttcaagactagact-----gaccaacatagtgaaacccctatctctactaaaaaatacaaa
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     768723 134 -   1829203 tgtggccagg-tacagtggctcacacctgtaatcccagcactttgggaggccgaggcgggcgaatcacgaggtcaggagttcaagactagact-----gaccaacatggtgaaacccctatctctactaaaaaatacaaa
i colAng1.NW_012115577v1   C 0 C 0
s mm10.chr17               59009646 127 -  94987271 --Tagccaggctgtggtggtgcacgtctttgatcccagcac-ttgggaggcagaggcaggcgaat-------ttctgagttcaaggccagcctagtccgggctatacagagaaa-ccctgtcttgaa--aaaaaaaCAAA
i mm10.chr17               C 0 I 2510
e micMur3.chr6               662503 3517 + 123392446 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e canFam3.chr12              386002  25 +  72498081 I
e saiBol1.JH378327           100777 3918 -    750284 I
e otoGar3.GL873550           714562  49 +  18854210 I
e aotNan1.NW_018511496v1      47116 3559 -    566255 I
e cebCap1.NW_016107755v1    1348747 3423 -   1771730 I
e calJac3.chr4             30929153 6068 + 171630274 I

a score=833010.000000
s hg38.chr6_GL000254v2_alt  1903271 151 +   4827813 aattagccgggcatggtggtgtgtgcctgtaatcccagctactgaggaggctgagacaggagaatcgcttgaacctggaaggcggaggttgcagtgagctgagattgcaccactgcactccagcctgggggacagagtgaga--ctgtctc------------aa
s panTro5.chr6             30748938 151 + 175400573 aattagccgggcatggtggtgtgtgcctgtaatcccagctactcaggaggctgagacaggagaatcgcttgaacctggaaggcggaggttgcagtgagctgagattgcaccactgcactccagcctgggcgacagagtgaaa--ctgtctc------------aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31172567 151 + 173848474 aattagccgggcatggtggtgtgtgcctgtaatcccagctactcaggaggctgagacaggagaatcgcttgaacctggaaggcggaggttgcagtgagctgagattgcaccactgcactccagcctgggcgacagagtgaga--ctgtctc------------aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     679554 151 +   2037526 aattagccgggcatggtggtgtgtgcctgtaatcccagctactcaggaggctgagacaggagaatcgcttgaacctggaaggcggaggttgcagtgagctgagattgcaccactgcactccagcctgggcaacagagtgaga--ctgtctc------------aa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75348197 153 + 122973662 aattagccgggcatggtggtgtgtgcctataatcccagctactcaggaggctgagacaggagaatcgcttgaacctggaaggtggaggttgcagtgagctgagattgcaccactgcattccagcctgggcgacagagtgagactctgtctc------------aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31259689 162 + 172585720 aattagccggatgtggtggtgtgcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgg-aggcggacgttgcagttagccgagatcgcaccactgcactctagcctgggtgacagagtgaga--ctgtctcaaaaaaaaaaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30548697 159 - 170955103 aattagccggatgtggtggtgtgcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgg-aggcggacgttgcagttagccgagatcgcaccactgcactctagcctgggtgacagagtgaga--ctgtctc---aaaaaaaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     844980 154 +   1495729 aattagccggatgtggtggtgtgcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgg-aggcggacgttgcagttagccgagatcgcaccactgcactctagcctgggtgacagagtgaga--ctgtctc--------aaaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      68120 156 -    811324 aattagccggatgtggtggtgtgcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgg-aggcggaggttgtagttagccgagatcgcaccactgcactctagcctgggtgacagagtgaga--ctgtctc------aaaagaaa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30098638 156 -  71996105 aattagccggatgtggtggtgtgcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgg-aggcggaggttgcagttagccgagatcgcaccactgcactctagcctgggtgacagagtgaga--ctgtctc------aaaaaaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     105431 156 +    779361 aattagccggatgtggtggtgtgcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgg-aggcggaggttgtagttagccgagatagcaccactgcactctagcctgggtgacagagtgaga--ctgtctc------aaaagaaa
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     768857 149 -   1829203 aattagccggatgtggtggtgtgcgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaaccagg-aggcggaggttgcagttagccgagatcgcaccactgcactctagcctgggtgatagagtgaga--ctgtctc-------------a
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               662503 3517 + 123392446 I
e mm10.chr17               59009773 2510 -  94987271 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e canFam3.chr12              386002  25 +  72498081 I
e saiBol1.JH378327           100777 3918 -    750284 I
e otoGar3.GL873550           714562  49 +  18854210 I
e aotNan1.NW_018511496v1      47116 3559 -    566255 I
e cebCap1.NW_016107755v1    1348747 3423 -   1771730 I
e calJac3.chr4             30929153 6068 + 171630274 I

a score=341450.000000
s hg38.chr6_GL000254v2_alt  1903422 65 +   4827813 aaaaa--agaaaaaacaaaatacaaacttgc--caaataataccattaagaaattaacaggaagccata
s panTro5.chr6             30749089 65 + 175400573 aaaaa--agaaaaaacaaaatacaaacttgc--caaataataccattaagaaattaacaggaagccata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31172718 64 + 173848474 aaaaa--ag-aaaaacaaaatacaaacttgc--caaataataccattaagaaattaacaggaagccata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     679705 65 +   2037526 aaaaa--agaaaaaacaaaatacaaacttgc--caaataataccattaagaaattaacaggaagccata
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75348350 65 + 122973662 aaaaa--agaaaaaacaaaatacaaacttgc--caaataataccattaagaaattaacaggaagccata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31259851 65 + 172585720 aaaag--aaagaaaagaaaatataaacttgc--caaataacgccattaagaaattaacaggaagctata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30548856 65 - 170955103 aaaag--aaagaaaagaaaatataaacttgc--caaataacgccattaagaaattaacaggaagctata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     845134 65 +   1495729 aaaag--aaagaaaagaaaatataaacttgc--caaataacgccattaagaaattaacaggaagctata
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      68276 65 -    811324 aaaaa--aaagaaaagaaaatataaacttgc--caaataacgccattaagaaattaacaggaagctaca
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30098794 67 -  71996105 aaaaaagaaagaaaagaaaatataaacttgc--caaataacaccattaagaaattaacaggaagctata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     105587 65 +    779361 aaaaa--aaagaaaagaaaatataaacttgc--caaataacgccattaagaaattaacaggaagctaca
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     769006 65 -   1829203 aaaaa--aaagaaaagaaaatataaacttgc--caaataacacaattaagaaattaacaggaagccata
i colAng1.NW_012115577v1   C 0 C 0
s canFam3.chr12              386027 54 +  72498081 aagaa--attaatagaatagcagatatttgcgataaacacaaccaataaagatctc-------------
i canFam3.chr12            I 25 C 0
e micMur3.chr6               662503 3517 + 123392446 I
e mm10.chr17               59009773 2510 -  94987271 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e saiBol1.JH378327           100777 3918 -    750284 I
e otoGar3.GL873550           714562 49 +  18854210 I
e aotNan1.NW_018511496v1      47116 3559 -    566255 I
e cebCap1.NW_016107755v1    1348747 3423 -   1771730 I
e calJac3.chr4             30929153 6068 + 171630274 I

a score=1864745.000000
s hg38.chr6_GL000254v2_alt  1903487 290 +   4827813 caatagaagatatttgcaataaatataacaaataaagatcctgtatctataatatataaagaactcttccagacaagccatttgaaaaattgac---------aaaaacac-ag----gaca----ccttattaaaatggagatctaaatgaactaaaggtctaaatgaacaagtactcaatatcattaattgtcaagtaaatgcaagataaaaatataccactttgaaattagaactcttgtgtactgctgctgggattataaaatggtgaaactactatagaaaacaatatgaagaggttcctctt
s panTro5.chr6             30749154 290 + 175400573 caatagaagatatttgcaataaatataacaaataaagatcctgtatctataatatataaagaactcttccagacaagccatttgaaaaattgac---------aaaaacac-ag----gaca----ccttattaaaatggagatctaaatgaactaaaggtctaaatgaacaagtactcaatatcattaattgtcaagtaaatgcaagataaaaatataccactttgaaattagaactcttgtgtactgctgctgggattataaaatggtgaaactactatagaaaacaatatgaagaggttcctctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31172782 290 + 173848474 caatagaagatatttgcaataaatataacaaataaagatcctgtatctataatatataaagaactcttccagacaagccatttgaaaaattgac---------aaaaacac-ag----gaca----ccttattaaaatggagatctaaatgaactaaaggtctaaatgaacaagtactcaatatcattaattgtcaagtaaatgcaagataaaaatataccactttgaaattagaactcttgtgtactgctgctgggattataaaatggtgaaactactatagaaaacaatatgaagaggttcctctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     679770 290 +   2037526 caatagaagatatttgcaataaatataacaaataaagatcctgtatctataatatataaagaactcttccagacaagccatttgaaaaattgac---------aaaaacac-ag----gaca----ccttattaaaatggagatctaaatgaactaaaggtctaaatgaacaagtactcaatatcattaattgtcaagtaaatgcaagataaaaatataccactttgaaattagaactcttgtgtactgctgctgggattataaaatggtgaaactactatagaaaacaatatgaagaggttcctctt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75348415 290 + 122973662 caatagaagatacttgcaataaatataaccaataaagatcctgtatctataatatataaagaactcttccagacaagccatttgaaaaattgac---------aaaaacac-ag----gaca----ccttattaaaatggagatctaaatgaactaaaggtctaaatgaacaagtactcaatatcattaatcgtcaagtaaatgcaagataaaaatataccactttgaaattagaactcttgtgtactgctgctgggattataaaatggtgaaactactatagaaaacaatatgaagaggttcctctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31259916 299 + 172585720 caatagaagatatttgcaacaaatataaccaataaagatcctttatctataatatataaaggattcttccagacaagccatttgaaaaatcgaccaaaaaaaaaaaaaaaa-ag----gaca----ccttattaaaatggagctctaaatgaactaaaagtctaaatcaacaagtactcaatatcattaatcgtcaagtaaatgcaagataaaaatataccactttgaaattagaactcttgtgtactgctgctgggattataaaatggtgaaactactatataaaacaatatgaagagattcctctt
i rheMac8.chr4             C 0 I 22
s macFas5.chr4             30548921 299 - 170955103 caatagaagatatttgcaacaaatataaccaataaagatcctttatctataatatataaaggattcttccagacaagccatttgaaaaatcgaccaaaaaaaaaaaaaaaa-ag----gaca----ccttattaaaatggagctctaaatgaactaaaagtctaaatcaacaagtactcaatatcaTTAATCGTCAAGTAAATGCAAGATAAAAATATACCACTTTgaaattagaactcttgtgtactgctgctgggattataaaatggtgaaactactatataaaacaatatgaagagattcctctt
i macFas5.chr4             C 0 I 4
s macNem1.NW_012012100v1     845199 298 +   1495729 caatagaagatatttgcaacaaatataaccaataaagatcctttatctataatatataaaggattcttccagacaagccatttgaaaaatcgacc-aaaaaaaaaaaaaaa-ag----gaca----ccttattaaaatggagctctaaatgaactaaaagtctaaatcaacaagtactcaatatcaTTAATCGTCAAGTAAATGCAAGATAAAAATATACCACTTTgaaattagaactcttgtgtactgctgctgggattataaaatggtgcaactactatataaaacaatatgaagagattcctctt
i macNem1.NW_012012100v1   C 0 I 22
s cerAty1.NW_012002513v1      68341 279 -    811324 caatagaagatatctgcaacaaatataaccaataaagatcctgtatctataatatataaaggattcttccagacaa--------------------aaaaaaaaaaaaaaa-ag----gaca----ccttattaaaatggAGCTCTAAATGAACTAAAAGTCTAAATCAACAAGTACTCAATATCATTAATCGTCAAGTAAATGCAAGATAAAAATATACCACTTTgaaattagaactcttgtgtactgctgctgggattataaaatggtgaaactactatataaaacaatatgaagagattcctctt
i cerAty1.NW_012002513v1   C 0 I 22
s chlSab2.chr17            30098861 300 -  71996105 caatagaagatatttgcaacaattataaccaataaagatcctgtatctataatatataaaggattcttccagacaagccatttgaaaaatcgaccaaaaaaaaaaaaaaaaaag----gaca----ccttattaaaatggaactctaaatgaactaaaagtctaaatcaacaagtactcaatatcaTTAATCGTCAAGTAAATGCAAGATAAAAATATACCACTTTgaaattagaactcttgtgtactgctgctgggattataaaatggtgaaactactatataaaacaatatgaagagattcctctt
i chlSab2.chr17            C 0 I 22
s manLeu1.NW_012106264v1     105652 297 +    779361 caatagaagatatctgcaacaaatataaccaataaagatcctgtatctataatatataaaggattcttccagacaagccatttgaaaaatcgaccaaaaaaaaaaaaaaaa-------gaca----ccttattaaaatggagctctaaatgaactaaaagtctaaatcaacaagtactcaatatcattaatcgtcaagtaaatgcaagataaaaatataccactttgaaattagaactcttgtgtactgctgctgggattataaaatggtgaaactactatgtaaaacaatatgaagagattcctctt
i manLeu1.NW_012106264v1   C 0 I 22
s colAng1.NW_012115577v1     769071 260 -   1829203 caatagaagatatttgcaacaaatataaccaataaagatcctgtatctataatatataaaggactcttccagacaagccatttgaaaaattgac-------aaaaaaaaaa-ag----gaca----ccttattaaaatggagctgtaaatgaactaaaggtctaaatcaacaagtactcaatattattaatcatcaagtaaatgcaagataaaaatataccactTTgaaattagaactcttgtgtactgctgctgggattataaaatggtgaaact--------------------------------
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           714611 287 +  18854210 taggagaagatatttggaacaattataaccaataaagagctcatatctagaatgtataaagaactcatccagacaagctattaggaaaattgac---------aaaagacc-agaacagaca----ccttataaaaatggagatctaaatgaacaagaaat----gtgaacaagtactcaacgtcattagtcatcaaacaaatgcaagataaaaacacgaCACTTTgaaattggaactcttgcatgctgctg-tgggattgtaaaatgatgtaataactatggaaaagagtatg--ttggtttctcaa
i otoGar3.GL873550         I 49 I 2
s canFam3.chr12              386081 242 +  72498081 ------------------------------------------atatctagaatatatatagaactcttttagacagcttgttagaaaaatggac---------aacggacc-ag----aacaattgtctctcaaaaactgagatctaagtgaccaagaa---catgtgaacaagaactcaatgtcattagttgttaaataatctcaagataaaaacataacacttcaaagttaagatgcttgtgcactgttggtgagattgtaaaatggt-acatttctatggaaaacactg----gagtttcctc--
i canFam3.chr12            C 0 C 0
e micMur3.chr6               662503 3517 + 123392446 I
e mm10.chr17               59009773 2510 -  94987271 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e saiBol1.JH378327           100777 3918 -    750284 I
e aotNan1.NW_018511496v1      47116 3559 -    566255 I
e cebCap1.NW_016107755v1    1348747 3423 -   1771730 I
e calJac3.chr4             30929153 6068 + 171630274 I

a score=21287.000000
s hg38.chr6_GL000254v2_alt  1903777 21 +   4827813 aattaaaaatagaactac-cag
s panTro5.chr6             30749444 21 + 175400573 aattaaaaatagaactac-cag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31173072 21 + 173848474 aattaaaaatagaactac-cag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     680060 21 +   2037526 aattaaaaatagaactac-cag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75348705 21 + 122973662 aattaaaaatagaactac-cag
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30549224 16 - 170955103 ------aattaaaaatatgtat
i macFas5.chr4             I 4 I 2
s colAng1.NW_012115577v1     769331 14 -   1829203 -------aatagaactac-cat
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           714900 21 +  18854210 agttaaaaatagaactat-gat
i otoGar3.GL873550         I 2 C 0
s canFam3.chr12              386323  4 +  72498081 -----aaaa-------------
i canFam3.chr12            C 0 C 0
e micMur3.chr6               662503 3517 + 123392446 I
e mm10.chr17               59009773 2510 -  94987271 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e saiBol1.JH378327           100777 3918 -    750284 I
e aotNan1.NW_018511496v1      47116 3559 -    566255 I
e cebCap1.NW_016107755v1    1348747 3423 -   1771730 I
e calJac3.chr4             30929153 6068 + 171630274 I
e manLeu1.NW_012106264v1     105949 22 +    779361 I
e chlSab2.chr17            30099161 22 -  71996105 I
e cerAty1.NW_012002513v1      68620 22 -    811324 I
e macNem1.NW_012012100v1     845497 22 +   1495729 I
e rheMac8.chr4             31260215 22 + 172585720 I

a score=2282659.000000
s hg38.chr6_GL000254v2_alt  1903798 347 +   4827813 atgac--aaaaaaattaaaaatagaattacc-------ccagaactcctgcttccaggtatatatc-----------aaaaaaaaaaaaatggaaagcagggtctt---gagatatttgcagactcatgttcatagcagcagtattcacaataacaaagaggtggaagcaacccacatgtccactgatggaaggat---------aaatgtggcgtgtacatacaatggaatattattcagccttatgaaggaagaaagtgctgtcacatactacaacatggatgaactttgaggactttatgttaagt-------------------aaagacatagtgtattattccacttatctgaggtgtctaa---agtcaaattcag-gggctgggcatggtgctt
s panTro5.chr6             30749465 355 + 175400573 atgac--aaaaaaattaaaaatagaattacc-------ccagaactcctgcttccaggtatatatc--------aaaaaaaaaaaaaaaatggaaagcagggtctt---gagatatttgcagactcatgttcatagcagcagtattcacaataacaaagaggtggaagcaacccacatgtccactgatggaaggat----aaataaaatgtggcgtgtacatacaatggaatattattcagccttatgaaggaagaaagtgctgtcacatactacaacatggatgaactttgaggactttatgttaagt-------------------aaagacatagtgtattattccacttatctgaggtgtctaa---agtcaaattcag-gggctgggcatggtgctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31173093 354 + 173848474 atgac--aaaaaaattaaaaatagaattacc-------ccagaactcctgcttccaggtatatatc---------aaaaaaaaaaaaaaatggaaagcagggtctt---gagatatttgcagactcatgttcatagcagcagtattcacagtaacaaagaggtggaagcaacccacatgtccactgatggaaggat----aaataaaatgtggcgtgtacatacaatggaatattattcagccttatgaaggaagaaagtgctgtcacatactacaacatggatgaactttgaggactttatgttaagt-------------------aaagacatagtgtattattccacttatctgaggtgtctaa---agtcaaattcag-gggctgggcatggtgctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     680081 352 +   2037526 atgac--aaaaaaattaaaaatagcattacc-------tcagaactcctgcttccaggtatatatc-----------aaaaaaaaaaaaatggaaagcagggtctt---gagatatttgcagactcatgttcatagcagcagtattcacaataacaaagaagtggaagcaacccacatgtccactgatggaaggat----aaataaaatgtggtgtgtacatacagtggaatattattcagccttatgaaggaagaaagtgctgtcacatactacaacatggatgaactttgaggactttatgttaagt-------------------aaagacatagtgtattattccacttatctgaggtgtctaa---agtcaaattcag-gggctgggcatggtgctt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75348726 349 + 122973662 atgac-aaaaaaaattaaaaatagaattacc-------ccagaactcctgattccaggtatatatt---------------aaaaaaaaatggaaagcagggtctt---gagatatttgcagactcatgttcatagcagcagtattcacaataacaaagaggtggaagcaaaccacatgtccactgatggaaggat----aaacaaaatgtggcgtgtacatacaatggaatattattcagccttatgaaggaagaaaatgctgtcacatactacaacatggatgaactttgaggactttatgttaagt-------------------aaagacatagtgtattattccacttatctgaggtgtctaa---agtcaaattcag-gggccgggcgtggtgctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31260237 358 + 172585720 atgacaaaaaaaaattaaaaatagaactacc-------ccagaactcctgcttccaggtatatagc------aaaaaaaaaaaaaaaaaatggaaagcagggtctt---gacatatttgcagactcatgttcatagcagcagtattcacaataacaaagaggtggaagcaacccacatgtccactgatggaagaat----aaacaaaatgtggcgtgtacatacaatggattattattcagcctta-aaaggaagaaaatgctgtcacatactacaacatggatgaactttgaggactttatgttcagt-------------------aaagacatagtgtatgattctgcttatctgaggtgtctaa---agtcaaattcag-gggccaggcgtggtgctt
i rheMac8.chr4             I 22 C 0
s macFas5.chr4             30549242 355 - 170955103 atgac-aaaaaaaattaaaaatagaactacc-------ccagaactcctgcttccaggtatatagc--------aaaaaaaaaaaaaaaatggaaagcagggtctt---gacatatttgcagactcatgttcatagcagcagtattcacaataacaaagaggtggaagcaacccacatgtccactgatggaagaat----aaacaaaatgtggcgtgtacatacaatggattattattcagcctta-aaaggaagaaaatgctgtcacatactacaacatggatgaactttgaggactttatgttcagt-------------------aaagacatagtgtatgattctgcttatctgaggtgtctaa---agtcaaattcag-gggccaggcgtggtgctt
i macFas5.chr4             I 2 C 0
s macNem1.NW_012012100v1     845519 355 +   1495729 atgac-aaaaaaaattaaaaatagaactacc-------ccagaactcctgcttccaggtatatagc--------aaaaaaaaaaaaaaaatggaaagcagggtctt---gacatatttgcagactcatgttcatagcagcagtattcacaataacaaagaggtggaagcaacccacatgtccactgatggaagaat----aaacaaaatgtggcgtgtacatacaatggattattattcagcctta-aaaggaagaaaatgctgtcacatactacaacatggatgaactttgaggactttatgttcagt-------------------aaagacatagtgtatgattctgcttatctgaggtgtctaa---agtcaaattcag-gggccaggcgtggtgctt
i macNem1.NW_012012100v1   I 22 C 0
s cerAty1.NW_012002513v1      68642 362 -    811324 atgac--aaaaaaattaaaaatagaactacc-------ccagaactcctgcttccaggtatatagcaaaaaaaaaaaaaaaaaaaaaaaaaggaaagcagggtctt---gacatatttgcagactcatgttcatagcagcagtattcacaataacaaagaggtggaagcaacccacatgtccactgatggaagaat----aaacaaaatgtggcgtggacatacaatggaatattattcagcctta-aaaggaagaaaatgctgtcacatactacaacatgaatgaactttgaggactttatgttcagt-------------------aaagacatagtgtatgattctgcttatctgaggtgtctaa---agtcaaattcag-gggccaggcgtggtgctt
i cerAty1.NW_012002513v1   I 22 C 0
s chlSab2.chr17            30099183 357 -  71996105 atgac-caaaaaaattaaaaatagaactacc-------ccagaactcctgcttccaggtatatagc------aaaaaaaaaaaaaaaaaatggaaagcagggtctt---gacatacttgcagactcatgttcatagcagcagtattcacaataacaaagaggtggaagcaacccacatgtccactgatggaagaat----aaacaaaatgtggcgtgtacatacaatggaatattattcagcctta-aaaggaagaaaatgttgtcacatactacaacatggatgaactttgaggactttatgttaagt-------------------aaagacatagtgtatgattctgcttatctgaggtgtctaa---agtcaaattcag-gggccaggcgtggtgctt
i chlSab2.chr17            I 22 C 0
s manLeu1.NW_012106264v1     105971 352 +    779361 atga--caaaaaaattaaaaatagaactacc-------ccagaactcctgcttccaggtatatagc------aaaaaaaaaaaaaaa----ggaaagcagggtctt---gacatatttgcagactcatgttcatagcagcagtattcacaataacaaagaggtggaagcaacccacatgtccactgatggaagaat----aaacaaaatgtggcgtggacatacaatggaatattattcagcctta-aaaggaagaaaatgctgtcacatactacaacatgaatgaactttgaggactttatgttcagt-------------------aaagacatagtgtatgattctgcttatctgaggtgtctaa---agtcaaattcag-gggccaggcgtggtgctt
i manLeu1.NW_012106264v1   I 22 C 0
s colAng1.NW_012115577v1     769345 356 -   1829203 atgac--aaaaaaattaaaaatagaactacc-------ccaaaactcctgcttccaggtgtatagc-----aaaaaaaaaaaaaaaaaaatggaaagcagggtctt---gatatatttgcagactcatgttcatagcagcagtattcacaataacaaagaggtggacgcaacccacatgtccactgatggaaggat----aaacaaaatgtggcgtgtacatacaatggaatattattcagcctta-aaaggaagaaaatgctgtcacatactacaacatggatgaactttgaggactttatgttaagt-------------------aaagacatagtatatgattctacttatctgaggtgtctaa---agtcaaattc-g-gggccaggcatgatgctt
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           714921 285 +  18854210 atgac-----------------agtcccact-------taataccccc-----------------c---------------------aaactggaaataggatcttgaagaggtatttgcacatccatgttcatagccgtactattcacaa-agccaagaggtggaagcaacccaaatgcccattgacagaagaatggataaacaaaatgtgatgcattcatacagtggaatactattcagctttataaaagaagaaaatgctttcacatactacgacatggatgaactttgaggacattatgctaagt-------------------gca---atag-----------------------------a---agacaagtacagagggccaggtgtagtggct
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              386327 367 +  72498081 -------aaaaaaatttgaaataggactaccacatgatccagcattcccacttctgggtatatatc----------------caaaaaaatggaaagctgggtcttgaagagatatttgcacatgcatattcatagcagcactatttacaagagccaagagctggaagcatcccaaatgtccattgacagatgaat--------aaaattctgtatattcatacaatggaatattattcagcccccaagaggaagggaatcctgtcacatactacaacatggtagaacctgtaggccatctggctaaatgaaacaggccagtcacaaaaaagaca-aatgtatgattctacttg--tgaggtatctaaagtagtcaaattcat-agaaacagaatggtagtt
i canFam3.chr12            C 0 I 249
e micMur3.chr6               662503 3517 + 123392446 I
e mm10.chr17               59009773 2510 -  94987271 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e saiBol1.JH378327           100777 3918 -    750284 I
e aotNan1.NW_018511496v1      47116 3559 -    566255 I
e cebCap1.NW_016107755v1    1348747 3423 -   1771730 I
e calJac3.chr4             30929153 6068 + 171630274 I

a score=2417391.000000
s hg38.chr6_GL000254v2_alt  1904145 407 +   4827813 cacgcctgtaatcccagcactttgggaggccaaggcaggcagatcacttgaggtcaggagttcgagaacagcctggccaatatggcaaaaccc----------------tgtctctactaaaaatagaaaaattagctgggcatggtggtgcacacc-----------tgtaatcccagctactcgggtagctgaggcatgagaattgcttgaacctgggaggcagaggttgcagtgagtcgagatcacgccactgcactccagcctggatgacagagcaagattgtca--aaacaaaaaa-----taaaaa-----------------------------------taaagtcaacttcaaagaaacagtagaatgatggttaccagaggctgggggaaggaagctggaggaaggggagttttgtttaatgggtacagagtttcagttttgcaagataaaaaac-ttttggaggtc
s panTro5.chr6             30749820 407 + 175400573 cacgcctgtaatcccagcactttgggaggccaaggcaggcagatcacttgaggtcaggagttcgagaacagcctggccaacatggcaaaacac----------------tgtctctactaaaaatagaaaaattagctgggcatggtggtacacacc-----------tgtaatcccagctactcgggtagctgaggcatgagaattgcttgaacctgggaggcagaggttgcagtgagtcgagatcacgccactgcactccagcctggatgacagagcaagattgtca--aaacaaaaaa-----taaaaa-----------------------------------taaagtcaaattcaaagaaacagtagaatgatggttaccagaggctgggggaaagaagctggaggaaggggagttttgtttaatgggtacagagtttcagttttgcaagataaaaaac-tttgggaggtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31173447 407 + 173848474 cacgcctgtaatcccagcactttgggaggccaaggcaggcagatcacttgaggtcaggagttcgagaacagcctggccaacatggcaaaacac----------------tgtctctactaaaaatagaaaaattagctgggcatggtggtacacacc-----------tgtaatcccagctactcgggtagctgaggcatgagaattgcttgaacctgggaggcagaggttgcagtgagtcgagatcacgccactgcactccagcctggatgacagagcaagactgtca--aaacaaaaaa-----taaaaa-----------------------------------taaagtcaaattcaaagaaacagtagaatgatggttaccagaggctgggggaaagaagctggaggaaggggagttttgtttaatgggtacagagtttcagttttgcaagataaaaaac-ttttggaggtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     680433 402 +   2037526 cacgcatgtaatcccagcactttgggaggccaaggcaggcagatcacttgaggtcaggagttcgagaacagcctggccaacatggcaaaacac----------------tgtctctactaaaaatagaaaaattagctgggcatggtggtgcacacc-----------tgtaatcccagctactcgggtagctgcggcatgagaattgcttgaacctgggaggcagaggttgcagtgagtcgagatcacgccactgcactccagcgtggatgacagagcaagattatca--aaacaaaaaa-----taaaaa-----------------------------------taaagtcaaattcaaagaaacagtagaatgatggttaccagaggctgggggaa-gaagctggaggaa-gggagttttgtttaatgggtacacagtttcagttttgcaagat---aaac-ttttggaggtc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75349075 404 + 122973662 cacgcctgtaatcccagcactttgggaggccgaagcaggcagatcacttgaggtcaggagttcaagaacagcctggccaacatggcaaaaccc----------------tgtctctactaaaaatagaaaaattagctgggcatggtggtgcacacc-----------tgtaatcccagccactcgggtagctgaggcataagaattgcttgaacctgggaggcagaggttgcagtgagtcaagatcacgccactgcactccagcctggatgacagagcaagactgtca--aaacaaaaaa-----taa---------------------------------------aaagtcaaattcaaagaaacagtagaatgatggttacgagaggctgggggaaggaagctgaaggaaggggagttttgtttaatgggtacagagtttcagttttgtcagataaaaaactttttggaggtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31260595 403 + 172585720 cacacctgtaatcccagcacact-ggaggccaaggcaggtggatcacttgaggtcaggagttcgagaacagcctggccaaaatggcgaaaccc----------------catctctactaaaaatagaaaaactagctgggcatggtggtgcatacc-----------tgtaatcccaactactcaggtagctcaggcatgagaattgcttgaacctgggaggcagaggttgcagtgagtcgagattgcaccactgcactccagcctgaatg--agagtgatattgtca--aaacaaaaaa-----taaaaa-----------------------------------taaagtcaaattcaaagaaacagtagaatggttgttactagatgctgggggaaggaagacaga-aaaggggagttttgtttaatgggtacagagtttcagttttgcaagataagaaac-ttttggagatc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30549597 403 - 170955103 cacacctgtaatcccagcacact-ggaggccaaggcaggtggatcacttgaggtcaggagttcgagaacagcctggccaaaatggcgaaaccc----------------catctctactaaaaatagaaaaactagctgggcatggtggtgcatacc-----------tgtaatcccaactactcaggtagctcaggcatgagaattgcttgaacctgggaggcagaggttgcagtgagtcgagattgcaccactgcactccagcctgaatg--agagtgagattgtca--aaacaaaaaa-----taaaaa-----------------------------------taaagtcaaattcaaagaaacagtagaatggttgttactagatgctgggggaaggaagacaga-aaaggggagttttgtttaatgggtacagagtttcagttttgcaagataagaaac-ttttggagatc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     845874 405 +   1495729 cacacctgtaatcccagcacact-ggaggccaaggcaggtggatcacttgaggtcaggagttcgagaacagcctggccaaaatggcgaaaccc----------------catctctactaaaaatagaaaaactagctgggcatggtagtgcatacc-----------tgtaatcccaactactcaggtagctcaggcatgagaattgcttgaacctgggaggcagaggttgcagtgagtcgagattgcaccactgcactccagcctgaatgacagagtgagattgtca--aaacaaaaaa-----taaaaa-----------------------------------taaagtcaaattcaaagaaacagtagaatggtcgttactagatgctgggggaaggaagacaga-aaaggggagttttgtttaatgggtacagagtttcagttttgcaagataagaaac-ttttggagatc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      69004 406 -    811324 cacacctgtaatcccagcacactgggaggccaaggcaggtggatcacttgaggtcaggagttcgagaacagcctggccaaaatggcgaaaccc----------------catctctactaaaaatagaaaaactagctgggcacggtagtgcatacc-----------tgtaatcccaactactcaggtagctcaggcatgagaattgcttgaacctgggaggcagaggttgcagtgagtcgagattgcaccactgcactccagcctgaatgacagagtgagattgtca--aaacaaaaaa-----taaaaa-----------------------------------taaagtcaaattcaaagaaacagtagaatggtcgttactagatgctgggggaaggaagacaga-aaaggggagttttgtttaatgggtacagagtttcagttttgcaagataagaaac-ttttggagatt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30099540 412 -  71996105 cacacctgtaatcccagcacactgggaggccaaggcaggtggatcacttgaggtcaggagttcgagaacagcctggccaaaatggcgaaaccc----------------tgtctctactaaaaatagaaaaactagctgggcatggtggtgcatacctgcatgggtggtgcaatcccaactactcaggtagctcaggcatgagaattgcttgaacctgggaggcagaggttgcagtgagtcgagattgcaccactgcactccagcctgaatgacagagtgagattgtca--aaacaaaaaa-----taaaaa-----------------------------------taaagtcaaattcaaagaaacagtagaatggtcgttactagatgctgggggaaggaagacaga-aaagggga-----gtttaatgggtacagagtttcagttttgcaagataagaaac-ttttggagatc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     106323 406 +    779361 cacacctgtaatcccagcacactgggaggccaaggcaagtggatcacttgaggtcaggagttcgagaacagcctggccaaaatggcgaaaccc----------------catctctactaaaaatagaaaaactagctgggcacggtagtgcatacc-----------tgtaatcccaactactcaggtagctcaggcatgagaattgcttgaacctgggaggcagaggttgcagtgagtcaagattgcaccactgcactccagcctgaatgacagagtgagattgtca--aaacaaaaaa-----taaaaa-----------------------------------taaagtcaaattcaaagaaacagtagagtggtcgttactagatgctgggggaaggaagacaga-aaaggggagttttgtttaatgggtacagagtttcagttttgcaagataagaaac-ttttggagatt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     769701 407 -   1829203 cacacctgtaatcccagcacattgggaggccgaggcaagtggatcacttgaggtcaggagttcgagaacagcctggccaaaatggcgaaaccc----------------cctctctactaaaaatagaaaaactagctgggcatggtggtgcatacc-----------tgtaatcccaactactcaggtagctcaggcatgagaattgcttgaacctgggaggcagaggttgcaatgagtcgagactgcaccactgcactccagcctgaatgacagagtgagattgtca--aaacaaaaaa-----taaaaa-----------------------------------taaattcaaactcaaagaaacagtagaatggtcgttactagatgctgggggaaggaagacagaggaaggggagttttgtttaatgggtacagagtttcagttttgcaagataagaaac-ttttggagatc
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           715206 460 +  18854210 cat-cctataatcccagaactttgggaagctgaagcagaaagagtacttgaggccaggaatttgagaccagcctcagcaacagagtgagactcgcatgcacacccaacgcccatctacaaaaagtaaaaagattagccaggcacagtg--acacact-----------tgtagtcccagctattcagaaggctgacagaggaggatcatttgagtccagaagtttgaggcttcagtgagctgtgatcacaccactgcactctggcctgggggacagaacaagactgtccctaaaaaataaatcgtttaaaaaggcagatactaacagttccacttatctgaggtgtctaaagtcaaattcatagaaacagtaacatagtgattaccatgggctgggggaagagggattgaggaaagagaatt--gtttaataggtacagagtttcagatttgcttaataaaaaag-ttctggagatc
i otoGar3.GL873550         C 0 I 23
e micMur3.chr6               662503 3517 + 123392446 I
e mm10.chr17               59009773 2510 -  94987271 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e canFam3.chr12              386694 249 +  72498081 I
e saiBol1.JH378327           100777 3918 -    750284 I
e aotNan1.NW_018511496v1      47116 3559 -    566255 I
e cebCap1.NW_016107755v1    1348747 3423 -   1771730 I
e calJac3.chr4             30929153 6068 + 171630274 I

a score=1890611.000000
s hg38.chr6_GL000254v2_alt  1904552 328 +   4827813 gggcatggtggctcgtgcctgtaatcccagcactttgggaggccaagtcgggcggatcatgagatcaggaattcaagaccagcctggccaatatggtaaaactccatctctactaaaaatacaaaaattagccaggcgtggtggtgggcgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagccaagatcgcgccactgcactccagcctgggcgacagagcgagactccatctcaaaaaaca----aacaaaaacttggagatctgtttcacatcaatatgaatatatgt
s panTro5.chr6             30750227 328 + 175400573 gggcatggtggctcgtgcctgtaatcccagcactttgggaggccaaggtgggcggatcatgagatcaggaattcaagaccagcctggccaatatggtaaaactccatctctactaaaaatacaaaaattagccaggcgtggtggtgggcgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacccaggaggcagaagttgcagtgagccaagatcgcgccactgcactccagcctgggtgacagagcgagactccatctcaaaaaaca----aacaaaaacttggagatctgtttcacatcaatatgaatatatgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31173854 328 + 173848474 gggcatggtggctcgtgcctgtaatcccagcactttgggaggccaaggtgggcggatcatgagatcaggaattcaagaccagcctggccaatatggtaaaactccatctctactaaaaatacaaaaattagccaggcgtggtggtgggcacctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagccaagatcgcgccactgcactccagcctgggcgacagagcgagactccatctcaaaaaaca----aacaaaaacttggagatctgtttcacatcaatatgaatatatgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     680835 328 +   2037526 gggcatggtggctcgtgcctgtaatcccagcactttgggaggccaaggcgggcggatcatgagatcaggaattcaagaccagcctggccaatatggtaaaactccatctctactaaaaatacaaaaattagccaggcgtggtggtgggcgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagccaagatcgcgccactgcactccagcctgggcgacagagcgagactccatctcaaaaaaca----aacaaaaacttggagatctgtttcacatcaatatgaatatatgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75349479 328 + 122973662 gggcatggtggctcgtgcctgtaatcccagcactttgggaggccaaggcgggcggatcatgaggtcaggaattcaagaccagcctggccaatatggtgaaactccatctctactaaaaatacaaaaattagccaggcgtggtggtgggcgcctgtaatcccagctacttgggagcctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagccgagattgcgccactgcactccagcctgggcgacagagcaagactccatctcaaaaaaca----aacaaaaacttggagatctgtttcacaacagtatgaatatacgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31260998 332 + 172585720 gggcatggtggcttacgcctgtaatcccagcacttcgggaggccaaggcaggtggatcatgagatcaggaattcgagaccagcctggccaacatgatgaaaccctatctctactaaaaatacaaaaattagccaggtgtggtggtgggcacctgtaatcccagctacttaggaggctgaggcaggagaatcgcttgaacccagaagccggaggtggcagtgagccgagatcgcgccactgcactccagcccaggcgacagagcgaaactccatctcaaaaaacaaacgaacaaaaacttggagatctgtttcacaacaatatgaatatacat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30550000 332 - 170955103 gggcatggtggcttacgcctgtaatcccagcactttgggaggccaaggcaggtggatcatgagatcaggaattcgagaccagcctggccaacatgatgaaaccctatctctactaaaaacacaaaaattagccaggtgtggtggtgggcacctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccagaagccggaggtggcagtgagccgagatcgcgccactgcactccagcccaggcgacagagcgaaactccatctcaaaaaacaaacgaacaaaaacttggagatctgtttcacaacaatatgaatatacat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     846279 332 +   1495729 gggcatggtggcttacgcctgtaatcccagcactttgggaggccaaggcaggtggatcatgagatcaggaattcgagaccagcctggccaacatgatgaaaccctatctctactaaaaatacaaaaattagccaggtgtggtggtgggcacctgtaatcctagctactcaggaggctgaggcaggagaatcgcttgaacccagaagccggaggtggcagtgagctgagatcgcgccactgcactccagcccaggcgacagagcgaaactccatctcaaaaaacaaacgaacaaaaacttggagatctgtttcacaacaatatgaatatacat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      69410 332 -    811324 gggcatggtggcttacgcctgtaatcccagcactttgggaggccaaggcaggcggatcatgagatcaggaattcgagaccagcctggccaacatggtgaaaccctatctctactaaaaatacaaaaattagccagatgtggtggtgggcacctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacccagaagccggaagtggcagtgagccgagatcgcgccactgcactccagcccgggtgacagagcgaaactccatctcaaaaaacaaacgaacaaaaacttggagatctgtttcacaacaatatgaatatacat
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30099952 332 -  71996105 gggcatggtggcttacgcctgtaatcccagcactttgggaggcctaggcaggcggatcgtgagatcaggaatttgagaccagcctggccaacatggtgaaaccctatctctactaaaaatacaaaaattagccaggtgtggtggtgggcacctgtaatcccagctactcaggaggctaaggcaggagaatcgcttgaacccaggagccggaggtggcagtgagccgatatcgtgccactgcactccagcccgggcgacagagcgaaactccatctcaaaaaacaaacgaacaaaaacttggagatctgtttcacaacaatatgaatatacat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     106729 332 +    779361 gggcatggtggcttacgcctgtaatcccagcactttgggaggccaaggcaggcggatcatgagatcaggaattcgagaccagcctggccaacatggtgaaaccctatctctactaaaaatacaaaaattagccaggtgtggtggtgggcacctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacccagaagccggaagtggcagtgagccgagatcgcgccactgcactccagcccgggcgacagagcgaaactccatctcaaaaaacaaacgaacaaaaacttggagatctgtttcacaacaatatgaatatacat
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     770108 332 -   1829203 gggcacggtggcttacacctgtaatcccagcactttgggaggccaaggcaggcggatcatgagatcaggaattcgagaccagcctggccaacatggtgaaaccctatctctactaaaaatacaaaaattagccaggtgtggtggtgggcacctgtaatcccagctactcacgaggctgaggcaggagaatcgcttgaacccaggaggcggaggtggcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgaaactccatctcaaaaaacaaacgaacaaaaacttggagatctgtttcacaacaatatgaatatacat
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               662503 3517 + 123392446 I
e mm10.chr17               59009773 2510 -  94987271 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e canFam3.chr12              386694 249 +  72498081 I
e saiBol1.JH378327           100777 3918 -    750284 I
e otoGar3.GL873550           715666  23 +  18854210 I
e aotNan1.NW_018511496v1      47116 3559 -    566255 I
e cebCap1.NW_016107755v1    1348747 3423 -   1771730 I
e calJac3.chr4             30929153 6068 + 171630274 I

a score=534966.000000
s hg38.chr6_GL000254v2_alt  1904880 82 +   4827813 aacactactgaactgtacacttaaaaatagttaagatggtaaattttatgt--------gttttttaccacaataaaaaCCGAACAAAAC
s panTro5.chr6             30750555 82 + 175400573 aacactactgaactgtacacttaaaaatagttaagatggtaaattttatgt--------gttttttaccacaataaaaaCCAAACAAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31174182 82 + 173848474 aacactactgaactgtacacttaaaaatagttaagatggtaaattttatgt--------gttttttaccacaataaaaaCCAAACAAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     681163 81 +   2037526 aacactactgaactgtacacttaaaaatagttaagatggtaaattttatgt--------gttttttaccacaat-aaaaccaaacaaaac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75349807 82 + 122973662 cacactactgaactgtacacttaaaaatagttaagatggtaaattttatgt--------gttttttaccacaataaaaaCCTAACAAAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31261330 82 + 172585720 aacactactgaactgtacacttaaaaatagttaaaatggtaaattttatgt--------gttttttaccacaataaaaaGCAAACAAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30550332 82 - 170955103 aacactactgaactgtacacttaaaaatagttaaaatggtaaattttatgt--------gttttttaccacaataaaaaGCAAACAAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     846611 82 +   1495729 aacactactgaactgtacacttaaaaatagttaaaatggtaaattttatgt--------gttttttaccacaataaaaaGCAAACAAAAC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      69742 82 -    811324 aacactactgaactgtacacttaaaaatagttaaaatggtaaattttatgt--------gttttttaccacaataaaaaGCAAACAAAAC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30100284 82 -  71996105 aacactactgaactgtacacttaaaaatagttaaaatggtaaattttatgt--------gttttttaccacaataaaaaGCAAACAAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     107061 82 +    779361 aacactactgaactgtacacttaaaaatagttaaaatggtaaattttgtgt--------attttttaccacaataaaaaGCAAACAAAAC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     770440 82 -   1829203 aacagtactgaactgtacacttaaaaatagttaaaatggtaaattttatgt--------gttttttaccacaataaaaaGCAAACAAAAC
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           715689 86 +  18854210 aacactactgaactgtacacttaaaaa----caagatggtaaattttatgttacatgtgtttttttaccacaataaaagaTAAACTAAAC
i otoGar3.GL873550         I 23 C 0
e micMur3.chr6               662503 3517 + 123392446 I
e mm10.chr17               59009773 2510 -  94987271 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e canFam3.chr12              386694 249 +  72498081 I
e saiBol1.JH378327           100777 3918 -    750284 I
e aotNan1.NW_018511496v1      47116 3559 -    566255 I
e cebCap1.NW_016107755v1    1348747 3423 -   1771730 I
e calJac3.chr4             30929153 6068 + 171630274 I

a score=52349.000000
s hg38.chr6_GL000254v2_alt  1904962 9 +   4827813 AAggcatga
s panTro5.chr6             30750637 9 + 175400573 AAggcatga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31174264 9 + 173848474 AAggcatga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     681244 9 +   2037526 aaggcatga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75349889 9 + 122973662 AAggcatga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31261412 9 + 172585720 GAggcatga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30550414 9 - 170955103 GAggcatga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     846693 9 +   1495729 GAggcatga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      69824 9 -    811324 GAggcatga
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30100366 9 -  71996105 GAggcatga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     107143 9 +    779361 GAggcatga
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     770522 9 -   1829203 GAggcatga
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               662503 3517 + 123392446 I
e mm10.chr17               59009773 2510 -  94987271 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e canFam3.chr12              386694 249 +  72498081 I
e saiBol1.JH378327           100777 3918 -    750284 I
e otoGar3.GL873550           715775 0 +  18854210 C
e aotNan1.NW_018511496v1      47116 3559 -    566255 I
e cebCap1.NW_016107755v1    1348747 3423 -   1771730 I
e calJac3.chr4             30929153 6068 + 171630274 I

a score=837858.000000
s hg38.chr6_GL000254v2_alt  1904971 128 +   4827813 tgattcatgcctgtaatcccagcactttaggagaccaaggtgggaggatcacttgagcccaagagttcaagaccagcctgggcagtgtggcaagacccaatctctcattaaaTAAATAATAA-----------TAACCa
s panTro5.chr6             30750646 128 + 175400573 tgattcatgcctgtaatcccagcactttaggagaccaaggtgggaggatcacttaagcccaagagttcaagaccagcctgggcagtgtggcaagacccaatctctCATTAAATAAATAATAA-----------TAACCa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31174273 128 + 173848474 tgattcatgcctgtaatcccagcactttaggagaccaaggtgggaggatcacttaagcccaagagttcaagaccagcctgggcagtgtggcaagacccaatctctCATTAAATAAATAATAA-----------TAACCa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     681253 128 +   2037526 tgattcatgcctgtaatcccagcactttaggagaccaaggtgggaggatcacttgagcccaagagttcaagaccagcctgggcagtgtggcaagacccaatctctcattaaataaataaTAA-----------TAACCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75349898 139 + 122973662 tgattcatgcctgtaatcccagcactttaggagaccaaggtgggaggatcacttgagcccaagagttcaagaccagcctgggcagtgtggcaagacctaatctctCATTAAATAAATAATAATAACcaaatagtaacca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31261421 127 + 172585720 tgactcatgcctgtaatcccagcactttaggagaccaaggtgggaggatcacttgagcccaagagttcaagaccagcctgggca-tgtggcaagacccaatctctcattaaataaataataa-----------taacca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30550423 127 - 170955103 tgactcatgcctgtaatcccagcactttaggagaccaaggtgggaggatcacttgagcccaagagttcaagaccagcctgggca-tgtggcaagacccaatctctcattaaataaataataa-----------taacca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     846702 128 +   1495729 tgactcatgcctgtaatcccagcactttaggagaccaaggtgggaggatcacttgagcccaagagttcaagaccagcctgggcactgtggcaagacccaatctctcattaaataaataataa-----------taacca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      69833 128 -    811324 tgactcatgcctgtaatcccagcactttaggagaccaaggtgggaggatcacttgagcccaagagttcaagaccagcctgggcactgtggcaagacccaatctctcattaaataaataataa-----------taacca
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30100375 128 -  71996105 tgactcatgcctgtaatcccagcactttaggagaccaaggtgggaggatcacttgagcccaagagttcaagaccagcctgggcactgtggcaagacccaatctctcattaaataaataataa-----------taacca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     107152 128 +    779361 tgactcatgcctgtaatcccagcactttaggagaccaaggtgggaggatcacttgagcccaagagttcaagaccagcctgggcactgtggcaagacccaatctctcattaaataaataataa-----------taacca
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     770531 128 -   1829203 tgactcatgcctgtaatcccagcactttaggagaccaaggtgggaggatcacttgaacccaagagttcaagaccagcctgggcactgtggcaagacccactctctcattaaataaataataa-----------taacca
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30935221 123 + 171630274 tggttcacacctataatcccagcactttgggaggccaaggtgggcagatcacttaaggtcaggagtttgagaccagtctggccaacatgttggactcccatctct-----actaaaaacaaa-----------aaacca
i calJac3.chr4             I 6068 C 0
e micMur3.chr6               662503 3517 + 123392446 I
e mm10.chr17               59009773 2510 -  94987271 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e canFam3.chr12              386694 249 +  72498081 I
e saiBol1.JH378327           100777 3918 -    750284 I
e otoGar3.GL873550           715775   0 +  18854210 C
e aotNan1.NW_018511496v1      47116 3559 -    566255 I
e cebCap1.NW_016107755v1    1348747 3423 -   1771730 I

a score=53567.000000
s hg38.chr6_GL000254v2_alt  1905099 14 +   4827813 aacaaaaaaataac
s panTro5.chr6             30750774 14 + 175400573 aacaaaaaaataac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31174401 14 + 173848474 aacaaaaaaataac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     681381 13 +   2037526 AACAAAAAAA-AAC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75350037 14 + 122973662 aacaaaaaaataac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31261548 11 + 172585720 aac---aaaataac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30550550 11 - 170955103 aac---aaaataac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     846830 11 +   1495729 aac---aaaataac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      69961 11 -    811324 aac---aaaataac
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30100503 11 -  71996105 aac---aaaataac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     107280 11 +    779361 aac---aaaataac
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     770659 11 -   1829203 aac---aaaataac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30935344 10 + 171630274 aa----aaattagc
i calJac3.chr4             C 0 C 0
s canFam3.chr12              386943 14 +  72498081 aattaaaaaacaac
i canFam3.chr12            I 249 C 0
e micMur3.chr6               662503 3517 + 123392446 I
e mm10.chr17               59009773 2510 -  94987271 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e saiBol1.JH378327           100777 3918 -    750284 I
e otoGar3.GL873550           715775  0 +  18854210 C
e aotNan1.NW_018511496v1      47116 3559 -    566255 I
e cebCap1.NW_016107755v1    1348747 3423 -   1771730 I

a score=601457.000000
s hg38.chr6_GL000254v2_alt  1905113 87 +   4827813 caccacttttcacactcacc---atggcaaaattt---aaaaacctaacaattccaagtgtt-----gtcaaggctataggacaactgctgg----tgagag
s panTro5.chr6             30750788 87 + 175400573 caccacttttcacactcacc---atggcaaaattt---aaaaacctaacaattccaagtgtt-----gtcaaggctataggacaactgctgg----tgagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31174415 87 + 173848474 caccacttttcacactcacc---atggcaaaattt---aaaaacctaacaattccaagtgtt-----gtcaaggctataggacaactgctgg----tgagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     681394 87 +   2037526 Caccacttttcacactcacc---atggcaaaattt---aaaaacctaacaattccaagtgtt-----gtcaaggctataggacaactgctgg----tgagag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75350051 87 + 122973662 caccacttttcacactcacc---atggcaaaattt---aaaaacctaacaattccaagtgtt-----gtcaaggctataggacaactgctgg----tgagag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31261559 90 + 172585720 caccacttttcacactcaccagaacggcaaaattt---aaaaatctaacaattctaagtgtt-----gtcaaggctataggacaactactgg----tgggag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30550561 90 - 170955103 caccacttttcacactcaccagaacggcaaaattt---aaaaatctaacaattctaagtgtt-----gtcaaggctataggacaactactgg----tgggag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     846841 90 +   1495729 caccacttttcacactcaccagaacggcaaaattt---aaaaatctaacaattctaagtgtt-----gtcaaggctataggacaactactgg----tgggag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      69972 90 -    811324 caccacttttcacactcaccagaacggcaaaattt---aaaaatctaacaattctaagtgtt-----gtcaaggctataggacaactactgg----tgggag
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30100514 90 -  71996105 caccacttttcacactcaccagaacggcaaaattt---aaaaatctaacaattctaagtgtt-----gtcaaggctataggacaactactgg----tgggag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     107291 90 +    779361 caccacttttcacactcaccagaacggcaaaattt---aaaaatctaacaattctaagtgtt-----gtcaaggctataggacaactactgg----tgggag
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     770670 90 -   1829203 caccacttttcacactcaccagaatggcaaaattt---aaaaatctaacaattccaagtgtc-----gtcaaggctataggacagctgctgg----tgagag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30935354 73 + 171630274 ca-----------------------ggcatagtgt---tgcatacctgcaattccagctactcagaggccgaggc---aggagaatcacttgaacctgggag
i calJac3.chr4             C 0 I 28
s otoGar3.GL873550           715775 87 +  18854210 Caccactattcacactcaccagaatggcaaaatat---aaaaggctaaccatactaaatatt-----gtca---tttcagtggaactactgg----tgggag
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              386957 86 +  72498081 -aaca------acactccccagaatggcaaaaatgaaaaaaaaattgacaatactaagtgtt-----gtcaaggctgtggaacaattgccag----tgggaa
i canFam3.chr12            C 0 C 0
e micMur3.chr6               662503 3517 + 123392446 I
e mm10.chr17               59009773 2510 -  94987271 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e saiBol1.JH378327           100777 3918 -    750284 I
e aotNan1.NW_018511496v1      47116 3559 -    566255 I
e cebCap1.NW_016107755v1    1348747 3423 -   1771730 I

a score=100302.000000
s hg38.chr6_GL000254v2_alt  1905200 15 +   4827813 tgcaaattggtataa
s panTro5.chr6             30750875 15 + 175400573 tgcaaattggtataa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31174502 15 + 173848474 tgcaaattggtataa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     681481 15 +   2037526 tgcaaattggtataa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75350138 15 + 122973662 tgcaaattggtataa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31261649 15 + 172585720 tgcaaattgctataa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30550651 15 - 170955103 tgcaaattgctataa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     846931 15 +   1495729 tgcaaattgctataa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      70062 15 -    811324 tgcaaattgctataa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30100604 15 -  71996105 tgcaaattgctataa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     107381 15 +    779361 tgcaaattgctataa
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     770760 15 -   1829203 tgcaaattggtataa
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           715862 15 +  18854210 cataagttggtataa
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              387043 15 +  72498081 cttaaattggtacat
i canFam3.chr12            C 0 C 0
e micMur3.chr6               662503 3517 + 123392446 I
e mm10.chr17               59009773 2510 -  94987271 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e saiBol1.JH378327           100777 3918 -    750284 I
e aotNan1.NW_018511496v1      47116 3559 -    566255 I
e cebCap1.NW_016107755v1    1348747 3423 -   1771730 I
e calJac3.chr4             30935427 28 + 171630274 I

a score=46929.000000
s hg38.chr6_GL000254v2_alt  1905215 7 +   4827813 ccactgt
s panTro5.chr6             30750890 7 + 175400573 ccactgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31174517 7 + 173848474 ccactgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     681496 7 +   2037526 ccactgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75350153 7 + 122973662 ccacttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31261664 7 + 172585720 ccacttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30550666 7 - 170955103 ccacttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     846946 7 +   1495729 ccacttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      70077 7 -    811324 tcacttt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30100619 7 -  71996105 ccacttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     107396 7 +    779361 ccactat
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     770775 7 -   1829203 ccacttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30935455 7 + 171630274 ccactgt
i calJac3.chr4             I 28 I 36
s otoGar3.GL873550           715877 7 +  18854210 atacctg
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              387058 7 +  72498081 ccacttt
i canFam3.chr12            C 0 C 0
e micMur3.chr6               662503 3517 + 123392446 I
e mm10.chr17               59009773 2510 -  94987271 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e saiBol1.JH378327           100777 3918 -    750284 I
e aotNan1.NW_018511496v1      47116 3559 -    566255 I
e cebCap1.NW_016107755v1    1348747 3423 -   1771730 I

a score=23880.000000
s hg38.chr6_GL000254v2_alt  1905222 2 +   4827813 ga
s panTro5.chr6             30750897 2 + 175400573 ga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31174524 2 + 173848474 ga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     681503 2 +   2037526 ga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75350160 2 + 122973662 ga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31261671 2 + 172585720 ga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30550673 2 - 170955103 ga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     846953 2 +   1495729 ga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      70084 2 -    811324 ga
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30100626 2 -  71996105 ga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     107403 2 +    779361 ga
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     770782 2 -   1829203 ga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30935498 2 + 171630274 aa
i calJac3.chr4             I 36 C 0
s saiBol1.JH378327           104695 2 -    750284 ga
i saiBol1.JH378327         I 3918 C 0
s cebCap1.NW_016107755v1    1352170 2 -   1771730 ga
i cebCap1.NW_016107755v1   I 3423 C 0
s otoGar3.GL873550           715884 2 +  18854210 ga
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              387065 2 +  72498081 ga
i canFam3.chr12            C 0 C 0
e micMur3.chr6               662503 3517 + 123392446 I
e mm10.chr17               59009773 2510 -  94987271 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I
e aotNan1.NW_018511496v1      47116 3559 -    566255 I

a score=643562.000000
s hg38.chr6_GL000254v2_alt  1905224 60 +   4827813 aaaaaaagtttggcattatgtatgaaacttgagcataacatatactttataagccagtaa
s panTro5.chr6             30750899 60 + 175400573 aaaaaaagtttggcattatgtatgaaacttgagcataacatatactttataagccagtaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31174526 60 + 173848474 aaaaaaagtttggcattatgtatgaaacttgagcataacatatactttataagccagtaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     681505 60 +   2037526 aaaaaaagtttggcattatgtatgaaacttgagcataacatatactttataagccagtaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75350162 60 + 122973662 aaaaaaagtttggcattatgtatgaaacttgagcataacatatactttataacccagtaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31261673 59 + 172585720 aaaaaaa-tttggcattatatgtgaaacttgagcataacatatactttataacccagcaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30550675 59 - 170955103 aaaaaaa-tttggcattatatgtgaaacttgagcataacatatactttataacccagcaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     846955 59 +   1495729 aaaaaaa-tttggcattatatgtgaaacttgagcataacatatactttataacccagcaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      70086 59 -    811324 aaaaaaa-tttggcattatgtgtgaaacttgagcataacatatactttataacccagcaa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30100628 59 -  71996105 aaaaaaa-tttggcattatgtgtgaaacttgagcataacatatactttataacccagcaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     107405 59 +    779361 aaaaaaa-tttggcattatgtgtgaaacttgggcataacatatactttataacccagcaa
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     770784 59 -   1829203 aaaaaaa-tttggcattatgtgtgaaacttgagtataacatatactttataacacagcaa
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30935500 60 + 171630274 aaagaaagtttggcattatgcatgaaacttgagcataacgtacactctatgacccagcaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           104697 60 -    750284 aaaaaaagtttggcattatgtatgaaacttgagcataacatatactctatgacccagcaa
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1352172 60 -   1771730 aaaaaaagtttggcattatgtatgaaacttgagcataacatatactctatgacccagcaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      50675 60 -    566255 aaaaaaagtttggcattatgtatgaaacttgagcataacatatactctatgacccagcaa
i aotNan1.NW_018511496v1   I 3559 C 0
s otoGar3.GL873550           715886 59 +  18854210 aaaaaaagtttgacaggatttattaaacaggagcat-gcatgtacttcatgacccaataa
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              387067 53 +  72498081 -aaaagagttggacttca----ttaaactttagcat-acatat-ccccaggacccaacaa
i canFam3.chr12            C 0 C 0
e micMur3.chr6               662503 3517 + 123392446 I
e mm10.chr17               59009773 2510 -  94987271 I
e proCoq1.NW_012149775v1     693933 3335 -   1411461 I

a score=962105.000000
s hg38.chr6_GL000254v2_alt  1905284 73 +   4827813 tacctctac---------tacgtatatattcaacagaaatgcatacgtatgtgtaaca---acatgtataaaaatgtttatagtg
s panTro5.chr6             30750959 73 + 175400573 tacctctac---------tacgtatatactcaacagaaatgcatacgtatgtgtaaca---acatgtataaaaatgtttatagtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31174586 73 + 173848474 tacctctac---------tacgtatatactcaacagaaatgcatacgtatgtgtaaca---acatgtataaaaatgtttatagtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     681565 73 +   2037526 tacctctac---------tacatatatactcaacagaaatgcatacgtatgtgtaaca---acatgtataaaaatgtttatagtg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75350222 73 + 122973662 tacctctac---------tatgtatatactcaacagaaatgcatacatatgtgtaaca---acatgtataaaaatgtttatagtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31261732 73 + 172585720 tacctctac---------tatgtatatactcaacagaaatgcatacgtatgtgtaaca---acatgtataaaaatgtttatagtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30550734 73 - 170955103 tacctctac---------tatgtatatactcaacagaaatgcatacgtatgtgtaaca---acatgtataaaaatgtttatagtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     847014 73 +   1495729 tacctctac---------tatgtatatactcaacagaaatgcatacgtatgtgtaaca---acatgtataaaaatgtttatagtg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      70145 73 -    811324 tacctctac---------tatgtatatactcaacagaaatgcatacgtatgtgtaaca---acatgtataaaaatgtttatagtg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30100687 73 -  71996105 tacctctac---------tatgtatatactcaacagaaatgcatacgtatgtgtaaca---acatgtataaaaatgtttatagtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     107464 73 +    779361 tacctctac---------tatgtatatactcaacagaaatgcatacgtatgtgtaaca---acatgtataaaaatgtttatagtg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     770843 73 -   1829203 tacctctac---------tatgtatatactcaacagaaatgcatacgtatgtgtaaca---acatgtataaaaatgtttatagtg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30935560 73 + 171630274 tacctctac---------tgcatatatactcaacagaaatgcatacatatgtgtaaca---acatgtataaaaatgtttatagtg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           104757 73 -    750284 tacctctac---------tgcatatatactcaacagaaatgcatacatatatgtaaca---acatgtataaaaatgtttatagtg
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1352232 70 -   1771730 tgcttctac---------tgcatatatactcaacagaaatgcatacatatgtgt---a---acatgtataaaaatgtttatagtg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      50735 73 -    566255 tacctctac---------tgcatatatactcaacagaaatgcatacatatgtgtaaca---acatgtataaaaatgtttatagtg
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     697268 73 -   1411461 tacctctac----------acgtatatactcaacagaaatgcatacttatatgtaacaaagacatgtataaaaatgttcatag--
i proCoq1.NW_012149775v1   I 3335 C 0
s otoGar3.GL873550           715945 76 +  18854210 tatttctactacaacatatccacatgtactcagtagaaatgcattcatgcatgtaacaaagacatgt------atgttcgta---
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              387120 76 +  72498081 tacttttac---------taggtttatactcaacagaaatgcatacatatgtgtaacaaagacatgtataaaaatgttcatagca
i canFam3.chr12            C 0 C 0
e micMur3.chr6               662503 3517 + 123392446 I
e mm10.chr17               59009773 2510 -  94987271 I

a score=2749413.000000
s hg38.chr6_GL000254v2_alt  1905357 188 +   4827813 gcatttctcgttatagccccaaactggataccacccacatgtc-catcatcagtagaatggataaataaattgttgtgtatgcatgcaatggg--ac-tacactgcaacgaaaatgaa------tgaactgctgctacaggcaacctggatgaatctcacaaacatgatgttgagcgaaaggagccagacataaaaga
s panTro5.chr6             30751032 188 + 175400573 gcatttctcgttatagccccaaactggataccacccacatgtc-catcatcagtagaatggataaataaattgttgtgtatgcatgcaatggg--ac-tacactgcaacgaaaatgaa------tgaactactgctacaggcaacctggatgaatctcacaaacatgatgttgagcgaaaggagccagacataaaaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31174659 188 + 173848474 gcatttctcgttatagccccaaactggataccacccacatgtc-catcatcagtagaatggataaataaattgttgtgtatgcatgcaatggg--ac-tacactgcaacgaaaatgaa------tgaactactgctacaggcaacctggatgaatctcacaaacatgatgttgagcgaaaggagccagacataaaaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     681638 186 +   2037526 gcatttctcgttatagccccaaactggataccacccacatgtc-catcatcagtagaatggataaataaa-tgttgtgtatgcatgcaat-gg--ac-tacactgcaacgaaaatgaa------tgaactactgctacaggcaacctggatgaatctcacaaacatgatgttgagcgaaaggagccagacataaaaga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75350295 188 + 122973662 gcatttctcgttatagccccaaactggataccacccacatgtc-catcatcagtagaatggataaataaattgttgtgtatgcatgcaatggg--at-tacactgcaacgaaaatgaa------tgaactactgctacaggcaacctggatgaatctcacaaacatgatgttgagcgaaaggagccagacataaaaga
i nomLeu3.chr1a            C 0 M 100
s rheMac8.chr4             31261805 188 + 172585720 gcatttctcgttatagccccaaactggataccacccacatgtc-catcatcagtagaatggataaataagttgttgtgtatgcatgcaatggg--ac-tacactgcaacgaaaatgaa------tgaactactgctacaggcaacctggatgaatctcacaaacatgatgttgagcgaaaggagccagacataaaaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30550807 188 - 170955103 gcatttctcgttatagccccaaactggataccacccacatgtc-catcatcagtagaatggataaataagttgttgtgtatgcatgcaatggg--ac-tacactgcaacgaaaatgaa------tgaactactgctacaggcaacctggatgaatctcacaaacatgatgttgagcgaaaggagccagacataaaaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     847087 188 +   1495729 gcatttctcgttatagccccaaactggataccacccacatgtc-catcatcagtagaatggataaataagttgttgtgtatgcatgcaatggg--ac-tacactgcaacgaaaatgaa------tgaactactgctacaggcaacctggatgaatctcacaaacatgatgttgagcgaaaggagccagacataaaaga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      70218 188 -    811324 gcatttctcgttatagccccaaactggataccacccacatgtc-catcatcagtagaatggataaataagttgttgtgtatgcatgcaatggg--ac-tacactgcaacgaaaatgaa------tgaactactgctacaggcaacctggatgaatctcacaaacatgatgttgagcgaaaggagccagacataaaaga
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30100760 188 -  71996105 gcatttctcgttatagccccaaactggataccacccacatgtc-catcatcagtagaatggataaataagttgttgtatatgcatgcaatggg--ac-tacactgcaacgaaaatgaa------tgaactactgctacaggcaacctggatgaatctcacaaacatgatgttgagcgaaaggagccagacataaaaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     107537 188 +    779361 gcatttctcgttatagccccaaactggataccacccacatgtc-catcatcagtagaatggataaataagttgttgtgtatgcatgcaatggg--ac-tacactgcaacgaaaatgaa------tgaactactgctacaggcaacctggatgaatctcacaaacatgatgttgagcgaaaggagccagacataaaaga
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     770916 188 -   1829203 gcatttctcgttatagccccaaactggataccacccacatgtc-catcatcagtagaatggataaataagttgttgtgtatgcatgcaatggg--ac-tacactgcaacgaaaatgaa------tgaactactgctacaggcaacctggatgaatctcacaaacatgatgttgagcgaaaggagccagacataaaaga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30935633 189 + 171630274 gaatttctcgttatagccccaaactggataccacccacaagtc-tatctgcagtagaatggataaataagttgttgtgtatgcatgcaatgggatac-tacactgcagcg-aaatgaa------tgaactacttctacaggcaacctggatgaatcacacaaacatgatgttgagcgaaaggagccagacataaaaga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           104830 190 -    750284 gaatttctcgttatagccccaaactggataccacccacatgtc-tatcttcagtagaatggataaataagttgttgtgtatgcatgcaaggggatac-tacaatgcaacgaaaatgaa------tgaactacttctacaggcaacctggatgaatcacacaaacatgatgttgggcgaaaggagccagacataaaaga
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1352302 191 -   1771730 gaatttctcgttatagccccaaactggataccacccacatgtcttatcttcagtagaatggataaataagttgttgtgtatgcatgcaatgggatac-tacactgcaacgaaaatgaa------tgaactacttctacaggcaacctggatgaatcacacaaacatgatgttgtgcgaaaggagccagacataaaaga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      50808 190 -    566255 gaatttctcgttatagccccaaactggataccacccacatgtc-tatcttcagtagaatggataaataagttgttgtgtatacatgcaatgggatac-tacactgcaacgaaaatgaa------tgaactacttctacaggcaacctggatgaatcacacaaacgtgatgttgagcgaaaggagccagaaataaaaga
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               666020 176 + 123392446 gcattttttgttacagccccaaactggataccacccacatgtc-catcattagcagaatggataagtaagt-----tgtatgcatacagtggg--ta-tacactgaaatgaaaatgaa------ccaa---ctgctacatgcaa-acagatgaatctcacaaac---atgttgagcaaaagaagccagacacaaaaga
i micMur3.chr6             I 3517 C 0
s proCoq1.NW_012149775v1     697341 175 -   1411461 -cattttttgttacagccccaaactggataccacgcacacgtc-catcattagtggaatggataagcaagt-----tgtatgcatacaatggg--ta-tacactgaaatgaaaatgaa------cgca---ctgctacaggcaa-atgggtgaatctcacaaac---atgttgagtaaaaggagccagacacaaaaga
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           716021 182 +  18854210 acatttttcatcatagccccaaactt--taagactcacatgtc-cactgtgagtatattagataagttg-------tgtatgcatgcaatggg--tactacactgcagtgaaaatgaataaacttaaa---ctaccaaaggcaa-atgactgcatttcacaagcaagatgtggagtaaacagagccagagacaaagga
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              387196 190 +  72498081 gcatttttcgttatagccccaaactggaatccacccacatgtc-caccatcagtagaatggataaataagttgttgtgtgtgcatgcaatgggatac-tacactgcaatgaaaatgaa------cgaactcctgctacaggcaacctggatgaatctcacaaacacggtgttgagcgaaaggagccagacagaaaaga
i canFam3.chr12            C 0 C 0
e mm10.chr17               59009773 2510 -  94987271 I

a score=1116129.000000
s hg38.chr6_GL000254v2_alt  1905545 83 +   4827813 atgcagactgtatgattcca-tttttgtgaagttcaaaaacaggcaaaaactaacctatggt-------gtcaggatagtggttacctttg
s panTro5.chr6             30751220 83 + 175400573 atgcagactgtatgattcca-tttttgtgaagttcaaaaacaggcaaaaactaacctatggt-------gtcaggatagtggttacctttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31174847 83 + 173848474 atgcagactgtatgattcca-tttttgtgaagttcaaaaacaggcaaaaactaacctatggt-------gtcaggatagtggttacctttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     681824 83 +   2037526 atacagactgtatgattcca-tttttgtgaagttcaaaaacaggcaaagactaacctatggt-------gtcaggatagtggttacctttg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31261993 83 + 172585720 atgcagactgtatgattcca-tttttgtgaagttcaaaaacaggcaaaaactaacctatggt-------gtcaggatagtggttacctttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30550995 83 - 170955103 atgcagactgtatgattcca-tttttgtgaagttcaaaaacaggcaaaaactaacctatggt-------gtcaggatagtggttacctttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     847275 83 +   1495729 atgcagactgtatgattcca-tttttgtgaagttcaaaaacaggcaaaaactaacctatggt-------gtcaggatagtggttacctttg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      70406 83 -    811324 atgcagactgtatgattcca-tttttgtgaagttcaaaaacaggcaaaaactaacctatggt-------gtcaggatagtggttacctttg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30100948 83 -  71996105 atgcagactgtatgattcca-tttttgtgaagttcaaaaacaggcaaaaactaacctatggt-------gtcaggatagtggttacctttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     107725 83 +    779361 atgcagactgtatgattcca-tttttgtgaagttcaaaaacaggcaaaaactaacctatggt-------gtcaggatagtggttacctttg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     771104 83 -   1829203 atgcagactgtatgattcca-tttttgtgaagttcaaaaacaggcaaaaactaacctatggt-------gtcaggatagtggttacctttg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30935822 84 + 171630274 atgcagactgtatgattccattttttgtgaagttcaaaaacaggcaaaaactaacctatgct-------gtcaggatagtggttacctttg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           105020 84 -    750284 atgcagactgtatgattccattttttgtgaagttcaaaaacaggcaaaaactaacctatgtt-------gtcaggatagtggttacctttg
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1352493 84 -   1771730 atgcagactgtatgattccattttttgtgaagttcaaaaacaggcaaaaactaacctatgct-------gtcaggatagtggttacctttg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      50998 84 -    566255 atgcagactgtatgattccattttttgtgaagttcaaaaacaggcaaaaactaacctatgct-------gtcagaataatggttacctttg
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               666196 90 + 123392446 acagagactgtatgattcca-tttatgcaaagatcaaaaacaggcaaaaactaacctatggtgttagaagtcaggatagtgcttacctttg
i micMur3.chr6             C 0 I 2
s proCoq1.NW_012149775v1     697516 90 -   1411461 acagagactgtatgattcca-tttatgcaaagttcaaaaacaggcgaaaactaacctatggggttagaagtcaggatagtgcttacctttg
i proCoq1.NW_012149775v1   C 0 I 72
s otoGar3.GL873550           716203 85 +  18854210 ctagagac----agactcta-catatgcaaaattagaaaacaagcaaaaactatcctatgatattagaaatcaagatagtagataccttt-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              387386 90 +  72498081 atgcagactgtatgattcca-tttatgcgaagttcaaaaacaggcaaaaactaacctatggtgctagaagtcaggatagtggttactttgg
i canFam3.chr12            C 0 C 0
e mm10.chr17               59009773 2510 -  94987271 I
e nomLeu3.chr1a            75350483 100 + 122973662 M

a score=485277.000000
s hg38.chr6_GL000254v2_alt  1905628 49 +   4827813 gggaggagggtgggtaat--gggaaaaggggcacaa---ggggaggat----cttttg
s panTro5.chr6             30751303 49 + 175400573 gggaggagggtgggtaat--gggaaaaggggcacaa---ggggaggat----cttttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31174930 49 + 173848474 gggaggagggtgggtaat--gggaaaaggggcacaa---ggggaggat----cttttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     681907 48 +   2037526 gggaggagggtgggtaat--gggaaaaggggcacaa----gggaggat----cttttg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31262076 49 + 172585720 gggaggagggtgggtaat--gggaaaaggggcacaa---ggggaggat----cttttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30551078 49 - 170955103 gggaggagggtgggtaat--gggaaaaggggcacaa---ggggaggat----cttttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     847358 49 +   1495729 gggaggagggtgggtaat--gggaaaaggggcacaa---ggggaggat----cttttg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      70489 49 -    811324 gggaggagggtgggtaat--gggaaaaggggcacaa---ggggaggat----cttttg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30101031 49 -  71996105 gggaggagggtgggtaat--gggaaaaggggcacaa---ggggaggat----cttttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     107808 49 +    779361 gggaggagggtgggtaat--gggaaaaggggcacaa---ggggaggat----cttttg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     771187 48 -   1829203 gggaggagggtgggtaat--ggg-aaaggggcacaa---ggggaggat----cttttg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30935906 49 + 171630274 gggaggagggtggatagt--gggaaaaggggcacaa---ggggaggat----ctactg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           105104 48 -    750284 gggagga-ggtgggaagt--gggaaaaggggcacaa---ggggaggat----ctactg
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1352577 48 -   1771730 gggagga-ggtgggaagt--gggaaaaggggcacaa---ggggaggat----ctactg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      51082 50 -    566255 gggaggagagtgggtagt-ggggaaaaggggcacaa---ggggaggat----ctgctg
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               666288 46 + 123392446 gaagaaagagt---------gggaggacgggcacaa---gggggggaagggtcttttg
i micMur3.chr6             I 2 C 0
s otoGar3.GL873550           716288 39 +  18854210 gggaggagagt---------agaag---aggcacaa---ggtggagcA----CTTTTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              387476 54 +  72498081 ggggggggatggaatagtgggggaggaggggcacaagtggggggagga----cttctg
i canFam3.chr12            C 0 C 0
e mm10.chr17               59009773 2510 -  94987271 I
e proCoq1.NW_012149775v1     697606 72 -   1411461 I
e nomLeu3.chr1a            75350483 100 + 122973662 M

a score=30420.000000
s hg38.chr6_GL000254v2_alt  1905677 3 +   4827813 agg
s panTro5.chr6             30751352 3 + 175400573 agg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31174979 3 + 173848474 agg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     681955 3 +   2037526 agg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31262125 3 + 172585720 agg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30551127 3 - 170955103 agg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     847407 3 +   1495729 agg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      70538 3 -    811324 agg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30101080 3 -  71996105 agg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     107857 3 +    779361 agg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     771235 3 -   1829203 agg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30935955 3 + 171630274 agg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           105152 3 -    750284 agg
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1352625 3 -   1771730 agg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      51132 3 -    566255 agg
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               666334 3 + 123392446 aag
i micMur3.chr6             C 0 I 10
s otoGar3.GL873550           716327 3 +  18854210 AAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59012283 3 -  94987271 AAG
i mm10.chr17               I 2510 C 0
s canFam3.chr12              387530 2 +  72498081 at-
i canFam3.chr12            C 0 C 0
e proCoq1.NW_012149775v1     697606 72 -   1411461 I
e nomLeu3.chr1a            75350483 100 + 122973662 M

a score=145610.000000
s hg38.chr6_GL000254v2_alt  1905680 13 +   4827813 tgctaataaggct
s panTro5.chr6             30751355 13 + 175400573 tgctaataaggct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31174982 13 + 173848474 tgctaataaggct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     681958 13 +   2037526 tgctaataaggct
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31262128 13 + 172585720 tgctaataaggct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30551130 13 - 170955103 tgctaataaggct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     847410 13 +   1495729 tgctaataaggct
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      70541 13 -    811324 tgctaataaggct
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30101083 13 -  71996105 tgctaataaggct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     107860 13 +    779361 tgctaataaggct
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     771238 13 -   1829203 tgctaataaggct
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30935958 13 + 171630274 tgctaataaggcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           105155 13 -    750284 tgctaataaggct
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1352628 13 -   1771730 tgctaataaggct
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      51135 13 -    566255 tgctaataaggct
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           716330 10 +  18854210 -CATAATGAGG--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59012286 13 -  94987271 CGCTTAGAAAGCA
i mm10.chr17               C 0 C 0
s canFam3.chr12              387532 13 +  72498081 tgctaagaaggct
i canFam3.chr12            C 0 C 0
e micMur3.chr6               666337 10 + 123392446 I
e proCoq1.NW_012149775v1     697606 72 -   1411461 I
e nomLeu3.chr1a            75350483 100 + 122973662 M

a score=911613.000000
s hg38.chr6_GL000254v2_alt  1905693  81 +   4827813 ttatctcttcac-ctggtgg-tggaaactcaagtgtgtctactt-------------------------------tg-tgagaactgggttgtgca--c--ttaa-aactgg-----------------------------------------------------------tgtgtctt
s panTro5.chr6             30751368  81 + 175400573 ttatctcttcac-ctggtgg-tggaaactcaagtgtgtctactt-------------------------------tg-tgagaattgggttgtgca--c--ttaa-aactgg-----------------------------------------------------------tgtgtctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31174995  81 + 173848474 ttatctcttcac-ctggtgg-tggaaactcaagtgtgtctactt-------------------------------tg-tgagaattgggttgtgca--c--ttaa-aactgg-----------------------------------------------------------tgtgtctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     681971  81 +   2037526 ttatctcttcac-ctggtgg-tggaaactcaagtgtgtctactt-------------------------------tg-tgagaattgggttgtgca--c--ttaa-aactgg-----------------------------------------------------------tgtgtctt
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31262141  81 + 172585720 ttatctcttcac-ctggtgg-tggaaactcaagtgtgtctactt-------------------------------tg-tgataattgggttgtgca--c--ttaa-aactgg-----------------------------------------------------------tgtgtctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30551143  81 - 170955103 ttatctcttcac-ctggtgg-tggaaactcaagtgtgtctactt-------------------------------tg-tgataattgggttgtgca--c--ttaa-aactgg-----------------------------------------------------------tgtgtctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     847423  81 +   1495729 ttatctcttcac-ctggtgg-tggaaactcaagtgtgtctactt-------------------------------tg-tgattattgggttgtgca--c--ttaa-aactgg-----------------------------------------------------------tgtgtctt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      70554  81 -    811324 ttatctcttcac-ctggtgg-tggaaactcaagtgtgtctactt-------------------------------tg-tgataattgggttgtgca--c--ttaa-aactgg-----------------------------------------------------------tgtgtctt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30101096  81 -  71996105 ttatctcttcac-ctggtgg-tggaaactcaagtgtgtctactt-------------------------------tg-tgataattgggttgtgca--c--ttaa-aactgg-----------------------------------------------------------tgtgtctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     107873  81 +    779361 ttatctcttcac-ctggtgg-tggaaactcaagtgtgtctactt-------------------------------tg-tgataattgggttgtgca--c--ttaa-aactgg-----------------------------------------------------------tgtgtctt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     771251  81 -   1829203 ttatctcttcac-ctggtgg-tggaaactcaagtgtgtctactt-------------------------------tg-tgataattgggttgtgca--c--ttaa-aactgg-----------------------------------------------------------tgtgtctt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30935971  76 + 171630274 tta-----tcat-ttggtgg-cggaaagtcaagtgtgtctactt-------------------------------tg-tgataattgggttgtgca--c--ttaa-aactgg-----------------------------------------------------------tgtgtgtt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           105168  74 -    750284 tta-----tcac-ctggtgg-cggaaactcaagtgtgtctactt-------------------------------tg-tggtaattgggttgtgca--c--ttaa-aactg-------------------------------------------------------------gtgtgtc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1352641  76 -   1771730 tta-----tcac-ctggtgg-cagaaactcaagtgtgtctactt-------------------------------tg-tgataattgggttgtgca--c--ttaa-aactgg-----------------------------------------------------------tgtgtctt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      51148  76 -    566255 tta-----tcac-ctggtgg-cagaaactcaagtgtgtctactt-------------------------------tg-tgataattgggttgtgca--c--ttaa-aactgg-----------------------------------------------------------tgtgactt
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               666347  82 + 123392446 ttctttcttcac-ctggggg-tagaaactcaagtgtatctactt-------------------------------tg-tgataattgagtcgtgca--c--ttaaaaactgg-----------------------------------------------------------tgtgtctt
i micMur3.chr6             I 10 I 47
s proCoq1.NW_012149775v1     697678  82 -   1411461 ttctttcttcac-ctgaggg-tagaaacacaagtgtatctgctc-------------------------------tg-tgataattgagttgtgca--c--ttaaaaactgg-----------------------------------------------------------tgtatctt
i proCoq1.NW_012149775v1   I 72 I 51
s otoGar3.GL873550           716340 168 +  18854210 -TCTGT-----T-CTGAGGG-TGGAAATTCTGGTGTGTCTACTTCATACATTTAAAAATGTGTGTCAAggctgggcg-tggtgactcacacctgtaatc--ttagcacttggaaggccgaggcaggtggattgcctgagctcatgaatttgagaccagcctgagccagagctatacctc
i otoGar3.GL873550         C 0 I 91
s mm10.chr17               59012299  77 -  94987271 -TAATTTTTAAC-ACGGTAG-TGGAAATCCAGGTG-----AAGA-------------------------------TG-TGATACTTAATTTGTGTA--CTTTTAA-AAGTCC-----------------------------------------------------------TGTGTCCG
i mm10.chr17               C 0 C 0
s canFam3.chr12              387545  84 +  72498081 ctatcccttcacacgggtggttaaaaacacaggtgtgtttactt-------------------------------tgatggtaatcaagttgcaca--c--ttaa-aattgg-----------------------------------------------------------tgtatttt
i canFam3.chr12            C 0 C 0
e nomLeu3.chr1a            75350483 100 + 122973662 M

a score=152852.000000
s hg38.chr6_GL000254v2_alt  1905774 37 +   4827813 ----tatgtatgctgt-------------------------tcttcaataaa--aaAAA----------------TTTTTTTAA-
s panTro5.chr6             30751449 36 + 175400573 ----tatgtatgctgt-------------------------tcttcaat-aa--aaaAA----------------TTTTTTTAA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31175076 35 + 173848474 ----tatgtatgctgt-------------------------tcttcaat--a--aaaaa----------------tttTTTTAA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     682052 37 +   2037526 ----tatgtatgctgt-------------------------tcttcaataaa--aaAAT----------------TTTTTTAAA-
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31262222 37 + 172585720 ----taaaaccgctgt-------------------------tcttcaataaa--aaAAA----------------TTTTTTAAA-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30551224 37 - 170955103 ----taaaaccgctgt-------------------------tcttcaataaa--aaAAA----------------ATTTTTAAA-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     847504 37 +   1495729 ----taaaactgctgt-------------------------tcttcaataaa--aaAAA----------------TTTTTTAAA-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      70635 37 -    811324 ----taaaactgctgt-------------------------tcttcaataaa--aaaaA----------------ATTTTTAAA-
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30101177 37 -  71996105 ----taaaactgctgt-------------------------tcttcaataaa--aaAAA----------------ATTTTTAAA-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     107954 37 +    779361 ----taaaactgctgt-------------------------tcttcaataaa--aaAAA----------------ATTTTTAAA-
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     771332 34 -   1829203 ----tatgtatgctgt-------------------------tcttcaat-----aaTTT----------------TTTTTTAAA-
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30936047 37 + 171630274 ----tatgtatgctgt-------------------------tcttcaataaa--aaatt----------------tTTTTAAAA-
i calJac3.chr4             C 0 I 1
s saiBol1.JH378327           105242 39 -    750284 ----tatgtatgctgt-------------------------tcttcaataaaTTTTTTT----------------TTTTTTTAA-
i saiBol1.JH378327         C 0 I 1
s cebCap1.NW_016107755v1    1352717 36 -   1771730 ----tatgtatgctgt-------------------------tcttcaataaa---aatt----------------ttTTTTAAA-
i cebCap1.NW_016107755v1   C 0 I 1
s aotNan1.NW_018511496v1      51224 36 -    566255 ----tatgtatactgt-------------------------tcttcaataaa---attt----------------ttttaaaaa-
i aotNan1.NW_018511496v1   C 0 I 1
s otoGar3.GL873550           716599 78 +  18854210 ----tgaggttgctgtgagctatgatgccaaaataagactgtctcaaaaaaa--aaaaaaaaCCAACTGGTGTGTCTTTCTGTA-
i otoGar3.GL873550         I 91 I 21
s mm10.chr17               59012376 16 -  94987271 ----------TGCTTT-------------------------GCTGTTGTAA----------------------------------
i mm10.chr17               C 0 I 6
s canFam3.chr12              387629 37 +  72498081 tctgtatgtataccgt-------------------------acctcaaaaaa--gtaaa---------------------caaaa
i canFam3.chr12            C 0 C 0
e micMur3.chr6               666429 47 + 123392446 I
e proCoq1.NW_012149775v1     697760 51 -   1411461 I
e nomLeu3.chr1a            75350483 100 + 122973662 M

a score=103175.000000
s hg38.chr6_GL000254v2_alt  1905811  9 +   4827813 --TCACGGTTT----
s panTro5.chr6             30751485  9 + 175400573 --TCACGGCTT----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31175111  9 + 173848474 --TCACGGCTT----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     682089  9 +   2037526 --TCACGGCTT----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75350583  9 + 122973662 --TCATGGCTA----
i nomLeu3.chr1a            M 100 C 0
s rheMac8.chr4             31262259  9 + 172585720 --TCAGGGCTT----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30551261  9 - 170955103 --TCAGGGCTT----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     847541  9 +   1495729 --TCAGGGCTT----
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      70672  9 -    811324 --TCAGGGCTT----
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30101214  9 -  71996105 --TCAGGGCTT----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     107991  9 +    779361 --TCAGGGCTT----
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     771366  9 -   1829203 --TCAGGGCTT----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30936085  9 + 171630274 --TCAGGGCTT----
i calJac3.chr4             I 1 C 0
s saiBol1.JH378327           105282  9 -    750284 --TCAGGGCTT----
i saiBol1.JH378327         I 1 C 0
s cebCap1.NW_016107755v1    1352754  9 -   1771730 --TCAGGGCTT----
i cebCap1.NW_016107755v1   I 1 C 0
s aotNan1.NW_018511496v1      51261  9 -    566255 --TCAGGGCTT----
i aotNan1.NW_018511496v1   I 1 C 0
s otoGar3.GL873550           716698  9 +  18854210 --TCAGGACTT----
i otoGar3.GL873550         I 21 I 4
s mm10.chr17               59012398  9 -  94987271 --GCGGGGCTT----
i mm10.chr17               I 6 I 2
s canFam3.chr12              387666 15 +  72498081 ACACAGGGCTTCCTC
i canFam3.chr12            C 0 C 0
e micMur3.chr6               666429 47 + 123392446 I
e proCoq1.NW_012149775v1     697760 51 -   1411461 I

a score=6472254.000000
s hg38.chr6_GL000254v2_alt  1905820 371 +   4827813 ATCAGGATTCAGCTGCCCATTAGACACctttctgtg----------tctctctc------tctctctctctcCAGCTCTTCACAGAGGTCCTCCAGGATCAAGGGGACCACTGATTCCACCACTGCTGAGTCTCCCACCTCCTCCTTGGGGTAGAGGCCCAATTCGGAGAGGGCTTGGCCCCAGGTCTAGCCCATATGGTCGTGGTTGGTGGGGAGTCAATGCAGAACCTCCTTTTCCGGGGCCAGGCCATGGGGGTCCCACCAGGGGAAGCTTTCACAAGGAACAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCGCCCAAGGATGACCCCCAGGTTATGGAAGGTG-----AGGTCCATTTTGTT-ATGC-----------------
s panTro5.chr6             30751494 379 + 175400573 ATCAGGATTCAGCTGCCCATTAGACACTTTtctgtg--tctttctctctctctc------tctctctctctcCAGCTCTTCACAGAGGTCCTCCAGGATCAAGGGGACCACTGATTCCACCACTGCTGAGTCTCCCACCTCCTCCTTGGGGTAGAGGCCCAATTCGGAGAGGGCTTGGCCCCAGGTCTAGCCCATATGGTCGTGGTTGGTGGGGAGTCAATGCAGAACCTCCTTTTCCGGGGCCAGGCCATGGGGGTCCCACCCGGGGAAGCTTTCACAAAGAACAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAACACCTGCCCACCCAAGGATGACCCCCAGGTTATGGAAGGTG-----AGGTCCATTTTGTT-ATGC-----------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31175120 375 + 173848474 ATCAGGATTCAGCTGCCCATTAGACACctttctgtg--tctt----tctctctc------tctctctctctcCAGCTCTTCACAGAGGTCCTCCAGGATCAAGGGGACCACTGATTCCACCACTGCTGAGTCTCCCACCTCCTCCTTGGGGTAGAGGCCCAATTCGGAGAGGGCTTGGCCCCAGGTCTAGCCCATATGGTCGTGGTTGGTGGGGAGTCAATGCAGAACCTCCTTTTCCGGGGCCAGGCCATGGGGGTCCCACCAGGGGAAGCTTTCACAAAGAACAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCACCCAAGGATGACCCCCAGGTTATGGAAGGTG-----AGGTCCATTTTGTT-ATGC-----------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     682098 373 +   2037526 ATCAGGATTCAGCTGCCCATTAGACACCTTCCTGTG--tct-----tctctctc------tctctctctctcCAGCTCTTCACAGAGGTCCTCCAGGATCAAGGGGACCACTGATTCCACCACTGCTGAGTCTCCCACCTCCTCCTTGGGGTAGAGGCCCAATTCGGAGAGGGCTTGGCCCCAGGTCTAGCCCATATGGTCGTGGTTGGTGGGGAGTCAATGCAGAACCTCCTTTT-CGGGGCCAGGCCATGGGGGTCCCACCAGGGGAAGCTTTCACAAAGAACAGAGAAACCCTCAAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCGCCCAAGGATGACCCCCAGGTTATGGAAGGTG-----AGGTCCATTTTGTT-ATGC-----------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75350592 377 + 122973662 ATCAGGATTCAGCTGCCCATTAGTCACctttctgtg--tctttc--tctctctc------tctctctctctcCAGCTCTTCACAGAGGTCCTCCAGGATCAAGGGGACCACTGATCCCACCACTGCTGAGTCTCCCACCTCCTCCTTGGGGTAGAGGCCCAATTCGGAGAGGCCTTGGCCCCAGGTCTAGCCCATATGGTCGTGGTTGGTGGGGAGTCAATGCAGAACCTCCTTTTCCAGGGCCAGGCCATGGGGGTCCCACCAGGGGAAGCTTTCACAAAGAACAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCGCCCAAGGATGATCCCCAGGTTATGGAAGGTG-----AGGTCCATTTTGTT-ATGC-----------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31262268 385 + 172585720 ATCAGGATTCAGCTGCCCATTGGTCACctttctgtg--tctttctttctctctctgtctctctctctctctcCAGCTCTTCACAGAGGTCCTCCAGGATCAAGGGGACCACTGATTCCACCACTGCTGAGTCTCCCACCTCCTCCTTGGGGTAGAGGCCCAATTCGGAGAGGCCTTGGCCCCAGGTCTAGCCCATATGGTCGTGGTTGGTGGGGAGTCAATGTTGAACCTCCTTTTCCGGGGCCAGGTCATGGGGGTCCCACCAGGGGAAGCTTTCACAAAGAACAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCGCCCAAGGATGACCCCCAGGTTATGGAAGGTG-----AGGTCCATTTTGTT-ACGC-----------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30551270 385 - 170955103 ATCAGGATTCAGCTGCCCATTGGTCACctttctgtg--tctttctttctctctctgtctctctctctctctcCAGCTCTTCACAGAGGTCCTCCAGGATCAAGGGGACCACTGATTCCACCACTGCTGAGTCTCCCACCTCCTCCTTGGGGTAGAGGCCCAATTCGGAGAGGCCTTGGCCCCAGGTCTAGCCCATATGGTCGTGGTTGGTGGGGAGTCAATGTTGAACCTCCTTTTCCGGGGCCAGGTCATGGGGGTCCCACCAGGGGAAGCTTTCACAAAGAACAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCGCCCAAGGATGACCCCCAGGTTATAGAAGGTG-----AGGTCCATTTTGTT-ACGC-----------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     847550 385 +   1495729 ATCAGGATTCAGCTGCCCATTGGTCACctttctgtg--tctttctttctctctctgtctctctctctctctcCAGCTCTTCACAGAGGTCCTCCAGGATCAAGGGGACCACTGATTCCACCACTGCTGAGTCTCCCACCTCCTCCTTGGGGTAGAGGCCCAATTCGGAGAGGCCTTGGCCCCAGGTCTAGCCCATATGGTCGTGGTTGGTGGGGAGTCAATGTTGAACCTCCTTTTCCGGGGCCAGGTCATGGGGGTCCCACCAGGGGAAGCTTTCACAAAGAACAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCACCCAAGGATGACCCCCAGGTTATGGAAGGTG-----AGGTCCATTTTGTT-ACGC-----------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      70681 381 -    811324 ATCAGGATTCAGCTGCCCATTGGTCACctttctgtg--tctttctttctctctctg----tctctctctctcCAGCTCTTCACAGAGGTCCTCCAGGATCAAGGGGACCACTGATTCCACCACTGCTGAGTCTCCCACCTCCTCCTTGGGGTAGAGGCCCAATTCGGAGAGGCCTTGGCCCTAGGTCTAGCCCATATGGTCGTGGTTGGTGGGGAGTCAATGTTGAACCTCCTTTTCCGGGGCCAGGTCATGGGGGTCCCACCAGGGGAAGCTTTCACAAAGAACAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCGCCCAAGGATGACCCCCAGGTTATAGAAGGTG-----AGGTCCATTTTGTT-ACGC-----------------
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30101223 385 -  71996105 ATCAGGATTCAGCTGCCCATTGGTCACctttctgtg--tctttctttctctctctgtctctctctctctctcCAGCTCTTCACAGAGGTCCTCCAGGATCAAGGGGACCACTGATTCCACCACTGCTGAGTCTCCCACCTCCTCCTTGGGGTAGAGGCCCAATTCGGAGAGGCCTTGGCCCCAGGTCTAGCCCATATGGTCGTGGTTGGTGGGGAGTCAATGTTGAACCTCCTTTTCCGGGGCCAGGTCATGGGGGTCCCACCAGGGCAAGCTTTCACAAAGAACAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCGCCCAAGGATGACCCCCAGGTTATGGAAGGTG-----AGGTCCATTTTGTT-ACGC-----------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     108000 385 +    779361 ATCAGGATTCAGCTGCCCATTGGTCACctttctgtg--tctttctttctctctctgtctctctctctctctcCAGTTCTTCACAGAGGTCCTCCAGGATCAAGGGGACCACTGATTCCACCACTGCTGAGTCTCCCACCTCCTCCTTGGGGTAGAGGCCCAATTCGGAGAGGCCTTGGCCCTAGGTCTAGCCCATATGGTCGTGGTTGGTGGGGAGTCAATGTTGAACCTCCTTTTCCGGGGCCAGGTCATGGGGGTCCCACCAGGGGAAGCTTTCACAAAGAACAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCGCCCAAGGATGACCCCCAGGTTATAGAAGGTG-----AGGTCCATTTTGTT-ACGC-----------------
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     771375 377 -   1829203 ATCAGGATTCAGCTGCCCATTGGTCACctttctgtg--tctttctctctctc--------tctctctctctcCAGCTCTTCACAGAGGTCCTCCAGGATCAAGGGGACCACTGATTCCACCACTGCTGAGTCTCCCACCTCCTCCTTGGGGTAGAGGCCCAATTCGGAGAGGCCTTGGCCCCAGGTCTAGCCCATATGGTCGTGGTTGGTGGGGAGTCAATATTGAACCTCCTTTTCCGGGGCCAGGTCATGGGGGTCCCACCAGGGGAAGCTTTCACAAAGAACAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCGCCCAAGGATGACCCCCAGGTTATGGAAGGTG-----AGGTCCATTTTGTT-ACGC-----------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30936094 366 + 171630274 ATTAGGATTAAGCTGCCCATTGGTCACCT---------TTTTTTTTTT------------TTTTCCTCTCTCCAGCTTTTCACAGAGGTCCTCCAGGATCAAGGGGACCATTGATTCCACCACTGCTGAGCCTCCCACCTCCTCCATGGGGTAGAGGCCCAATTCGGGGAGGCCTTGGCCCCAGGTCTAGCCCATATGGTCGTGGTTGGTGGGGAGTCAATGCTGAACCTCCTTTTCCGGGGCCAGGCCATGGGGGTCCCACCAGGGGAAGCTTTCACAAAGAACAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCGCCCAAGGATGACCCCCAGGTTATGGAAGGTG-----AGGTCCATTTTGTT-ATGC-----------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           105291 375 -    750284 ATTAGGATTAAGCTGCCCATTGGTCACCTTTCTGTTTGTTTTGTTTTT------------TCTCTCTCTCTTCAGCTTTTCACAGAGGTCCTCCAGGATCAAGGGGACCATTGATTCCACCACTGCTGAGTCTCCCACCTCCTCCATGGGGTAGAGGCCCAATTCGGGGAGGCCTTGGCCCCAGGTCTAGCCCATATGGTCGTGGTTGGTGGGGAGTCAATGCGGAACCGCCTTTTCCGGGGCCAGGCCATGGGGGTCCCACCAGGGGAAGCTTTCACAAAGAACAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCGCCCAAGGATGACCCCCAGGTTATGGAAGGTG-----AGGTCCATTTTGTT-ATGC-----------------
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1352763 373 -   1771730 ATTAGGATTAAGCTGCCCATTGGTCACCTTTCTATT--TGTTTTTTTC------------TCTCTCTCTCTTCAGCTTTTCACAGAGGTCCTCCAGGATCAAGGGGACCATTGATTCCACCATTGCTGAGTCTCCCACCTCCTCCATGGGGTAGAGGCCCAATACGGGGAGGCCTTGGCCCCAGGTCTAGCCCATATGGTCGTGGTTGGTGGGGAGTCAATGCTGAACCGCCTTTTCCGGGGCCAGGCCATGGGGGTCCCACCAGGGGAAGCTTTCACAAAGAACAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCGCCCAAGGATGACCCCCAGGTTATGGAAGGTG-----AGGTCCATTTTGTT-ATGC-----------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      51270 373 -    566255 ATTAGGATTAAGCTGCCCATTGGTCACCTTTCTGTT--TGTTTTTTTC------------TCTCTCTCTCTTCAGCTTTTCACAGAGGTCCTCCAGGATCAAGGGGACCATTGATTCCACCACTGCTGAGTCTCCCACCTCCTCCATGGGGTAGAGGCCCAATTCGGGGAGGCCTTGGCCCCAGGTCTAGCCCATATGGTCGTGGTTGGTGGGGAGTCAATGCTGAACCTCCTTTTCCGGGGCCAGGCCATAGGGGTCCCACCAGGGGAAGCTTTCACAAAGAACAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCGCCCAAGGATGACCCCCAGGTTATGGAAGGTG-----AGGTCCATTTTGTT-ATGC-----------------
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               666476 359 + 123392446 ATCAGGATTAAGCTGCCCATTGGTCACCTTTCTGTG--TCTTTTTCTCTC--------------------TCCAGCTCTTCACAGAGGTCCTCCAGGATCAAGGGGACTGATGATTCCACCACTGCTCAGTCTCCCACCTCCTCCCCGGGGTAGAGGCCCAATTCGGGGAGGCCTCGGCCCCAGGTCTGGCCCATATGGTCATGGTTGGTGGGGGGTCAATGCTGAACCTCCTTTT------CCAGGCCATGGGGGTCCCTCCAGGGGAAGCTTTCACAAAGAGCAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCAGCCAAGGATGACCCCCAGGTTATGGAAGGTA-----AGGTCCATTTTGTT-ATGC-----------------
i micMur3.chr6             I 47 C 0
s proCoq1.NW_012149775v1     697811 363 -   1411461 ATCAGGTTTAAGCTGCCCATTGGTCACCTTTCCGTG--TC--CTTCTCTC--------------------TCCAGCTCTTCACAGAGGTCCTCCAGGATCAAGGGGACTGATGATTCCACCACTGCTCAGTCTCCCACCTCCTCCCCGGGGTAGAGGCCCAATTCGGGGAGGCCTTGGCCCCAGGTCTGGCCCATATGGTCGTGGTTGGTGGGGGGTCAATGCTGAACCTCCTTTTCTGGGGCCAGGCCATGGGGGTCCCTCCAGGGGAAGCTTTCACAAAGAGCAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCAGCCAAGGATGACCCCCAGGTTATGGAAGGTG-----AGGTCCATTTTGTT-ACGC-----------------
i proCoq1.NW_012149775v1   I 51 C 0
s otoGar3.GL873550           716711 382 +  18854210 ATCAGGATTAAGCTGCCCATTGGTTACCTTTCCATG--TCTTTCTCTCTCTCTCCCC---TCTCTCTTTGTCCAGCTCTTCACAGAGGTCCTCCAGGATCCAGGGGACCGATGATTCCACCATTGCTCAGTCTCCCACCTCCTCCCCGTGGTAGAGGCCCAATTCGGGGAGGCCTCAGCCCTAGGTCTGGCCCATATGGTCGTGGTTGGTGGGGGGTCAATGCTGAACCTCCTTTTCCAGGGCCAGGCCATGGGGGTCCCTCCAGGGGAAGCTTTCACAAAGAGCAGAGAAACCCTCGAAGGCTCAAAAGCTGGTCTCTTATCAAGAATACCTGCCCACCCAAGGATGACCCCCAGGTTATGGAAGGTG-----AGGTCCATTTTGTT-ATGC-----------------
i otoGar3.GL873550         I 4 C 0
s mm10.chr17               59012409 366 -  94987271 GTCAGGACTAAGCTGCCCAGCAATCACCTCCCTG--------------------------TCTCTCTCTCTGTAGCTTTCCACAGGGGTCCTCCAGGATCAAGGGGACGGATGATTCCCCCACTGCTGAGTCTCCCGCCTCCTCCCCGGGGTAGAGGCTACATTCGGGGAGGCCTCGGTCCTCGATCTAGCCCGTATGGTCGTGGTTGGTGGGGTATCAATGCCGAACCTCCTTTTCCTGGGCCAGGCCATGGGGGTCCCTCTAGGGAAAGCTTTTACAAAGAGGCGAGAAACCCACGAAGGCTCAGAAGCTGGTCTCTTGTCAAGAATACCTACCCACCCAAGGACAGCCCCCAGATGATGGAAGGTAAGGCCAGGCCCTCTCTGTT-ACGT-----------------
i mm10.chr17               I 2 I 74
s canFam3.chr12              387681 393 +  72498081 ATGAGGATTAAGCTGGCCACTGATCACCTTTCCATG--TCTTTCTTTCTC----------TTTCTTTCTCTCCAGCTCTTCACAGAGGTCCTCCAGGATCAAGGGGACCAATGATTCCACCACTGCTGAGCCTCCCACCTCCTCCCAGGGGCAGAGGCCCAATCCGGGGAGGCCTGGGTCCCAGGTGCGGCCCATATGGTCGTGGCTGGTGGGGGGCCAATACTGAACCTCCTTTTCCTGGACCAGGCCATGGGGGTCCTTCCAGAGGAGGCTTTCACAAAGAGCAGAGAAATCCCCGAAGGCTCAAAAGTTGGTCTCTTATCAAAAATACCTGCCCACCCAAGGATGGCCCCCAAGTTATGGAAGGTG-----AGGTTCTTTTTTTTGATGCCTGTACATATTTAATAC
i canFam3.chr12            C 0 C 0

a score=112656.000000
s hg38.chr6_GL000254v2_alt  1906191 8 +   4827813 CCATTACT
s panTro5.chr6             30751873 8 + 175400573 CCATTACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31175495 8 + 173848474 CCATTACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     682471 8 +   2037526 CCATTACT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75350969 8 + 122973662 CCATTACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31262653 8 + 172585720 CCATAACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30551655 8 - 170955103 CCATAACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     847935 8 +   1495729 CCATAACT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      71062 8 -    811324 CCATTACT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30101608 8 -  71996105 CCATTACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     108385 8 +    779361 CCATTACT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     771752 8 -   1829203 CCATTACT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30936460 8 + 171630274 CCCTTACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           105666 8 -    750284 CCATTACT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1353136 8 -   1771730 CCGTTACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      51643 8 -    566255 CCGTTACT
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               666835 7 + 123392446 CCATTAC-
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     698174 8 -   1411461 CCATTACT
i proCoq1.NW_012149775v1   C 0 I 40
s otoGar3.GL873550           717093 8 +  18854210 CCATTACT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              388074 8 +  72498081 CCATCACT
i canFam3.chr12            C 0 C 0
e mm10.chr17               59012775 74 -  94987271 I

a score=136179.000000
s hg38.chr6_GL000254v2_alt  1906199 9 +   4827813 CCCAGAGTG
s panTro5.chr6             30751881 9 + 175400573 CCCAGAGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31175503 9 + 173848474 CCCAGAGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     682479 9 +   2037526 CCCAGAGTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75350977 9 + 122973662 CCCAGAGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31262661 9 + 172585720 CCCAGAGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30551663 9 - 170955103 CCCAGAGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     847943 9 +   1495729 CCCAGAGTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      71070 9 -    811324 CCCAGAGTG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30101616 9 -  71996105 CCCAGAGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     108393 9 +    779361 CCCAGAGTG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     771760 9 -   1829203 CCCAGAGTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30936468 9 + 171630274 CCCAGAGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           105674 9 -    750284 CCCAGAGTG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1353144 9 -   1771730 CCTAGAGTA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      51651 9 -    566255 CCCAGAGTG
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               666842 9 + 123392446 CCCAGAGGG
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           717101 8 +  18854210 -CCAGAGTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              388082 9 +  72498081 CCCAGAATG
i canFam3.chr12            C 0 I 180
e mm10.chr17               59012775 74 -  94987271 I
e proCoq1.NW_012149775v1     698182 40 -   1411461 I

a score=45662.000000
s hg38.chr6_GL000254v2_alt  1906208 8 +   4827813 ACCTAATT
s panTro5.chr6             30751890 8 + 175400573 ACCTAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31175512 8 + 173848474 ACCTAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     682488 8 +   2037526 ACCTAATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75350986 8 + 122973662 ACCTAATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31262670 8 + 172585720 ACCTAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30551672 8 - 170955103 ACCTAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     847952 8 +   1495729 ACCTAATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      71079 8 -    811324 ACCTAATT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30101625 8 -  71996105 ACCTAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     108402 8 +    779361 ACCTAATT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     771769 8 -   1829203 ACCTAATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30936477 2 + 171630274 AC------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           105683 2 -    750284 AC------
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1353153 2 -   1771730 AC------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      51660 2 -    566255 AC------
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               666851 8 + 123392446 ACCTAATT
i micMur3.chr6             C 0 I 382
s otoGar3.GL873550           717109 8 +  18854210 ACCTGATT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17               59012775 74 -  94987271 I
e proCoq1.NW_012149775v1     698182 40 -   1411461 I
e canFam3.chr12              388091 180 +  72498081 I

a score=57708.000000
s hg38.chr6_GL000254v2_alt  1906216 9 +   4827813 TTCAGAAGA
s panTro5.chr6             30751898 9 + 175400573 TTCAGAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31175520 9 + 173848474 TTCAGAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     682496 9 +   2037526 TTCAGAAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75350994 9 + 122973662 TTCAGAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31262678 9 + 172585720 TTCAGAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30551680 9 - 170955103 TTCAGAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     847960 9 +   1495729 TTCAGAAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      71087 9 -    811324 TTCAGAAGA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30101633 9 -  71996105 TTCAGAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     108410 9 +    779361 TTCAGAAGA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     771777 9 -   1829203 TTCAGAAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30936479 3 + 171630274 ------AGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           105685 3 -    750284 ------GGA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1353155 3 -   1771730 ------AGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      51662 3 -    566255 ------AGA
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           717117 6 +  18854210 ---CCCAGA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               666859 382 + 123392446 I
e mm10.chr17               59012775 74 -  94987271 I
e proCoq1.NW_012149775v1     698182 40 -   1411461 I
e canFam3.chr12              388091 180 +  72498081 I

a score=126325.000000
s hg38.chr6_GL000254v2_alt  1906225 14 +   4827813 TCATTCACAATCTT
s panTro5.chr6             30751907 14 + 175400573 TCATTCACGATCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31175529 14 + 173848474 TCATTCACGATCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     682505 14 +   2037526 TCATTCACGATCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75351003 14 + 122973662 TCATTCACGATCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31262687 14 + 172585720 TCATTCATGATCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30551689 14 - 170955103 TCATTCATGATCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     847969 14 +   1495729 TCATTCATGATCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      71096 14 -    811324 TCATTCATGATCTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30101642 14 -  71996105 TCATTCATGATCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     108419 11 +    779361 TCATTCATGA---T
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     771786 14 -   1829203 TCATTCATGATCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30936482 14 + 171630274 ACATTCATGATCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           105688 14 -    750284 ACATTCATGATCAT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1353158 14 -   1771730 ACATTCATGATCAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      51665 14 -    566255 ACATTCATGATCAT
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           717123 14 +  18854210 ATGCCCATGACATT
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               59012849 14 -  94987271 TTATGCAGGGCCTT
i mm10.chr17               I 74 I 21
e micMur3.chr6               666859 382 + 123392446 I
e proCoq1.NW_012149775v1     698182 40 -   1411461 I
e canFam3.chr12              388091 180 +  72498081 I

a score=232097.000000
s hg38.chr6_GL000254v2_alt  1906239 21 +   4827813 CTCTGGGCT--------------------------------TTCCTT-TTTGCT
s panTro5.chr6             30751921 21 + 175400573 CTCTGGGCT--------------------------------TTCCTT-TTTGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31175543 21 + 173848474 CTCTGGGCT--------------------------------TTCCTT-TTTGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     682519 21 +   2037526 CTCTGGGCT--------------------------------TTCCTT-TTTGCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75351017 21 + 122973662 CTCTGGGCT--------------------------------TTCCTT-TTTGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31262701 21 + 172585720 CTTTGGGCT--------------------------------TTCCTT-TTTGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30551703 21 - 170955103 CTTTGGGCT--------------------------------TTCCTT-TTTGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     847983 21 +   1495729 CTTTGGGCT--------------------------------TTCCTT-TTTGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      71110 21 -    811324 CTTTGGGCC--------------------------------TTCCTT-TTTGCT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30101656 21 -  71996105 CTTTGGGCT--------------------------------TTCCTT-TTTGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     108430 21 +    779361 CTTTGGGCT--------------------------------TTCCTT-TTTGCT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     771800 21 -   1829203 CTCTGGGCT--------------------------------TTCCTT-TTTGCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30936496 22 + 171630274 CTCTGGGCT--------------------------------TTCCTTGTTTGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           105702 22 -    750284 CTCCGGGCT--------------------------------TTCCTTGTTTGCT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1353172 22 -   1771730 CTCTGGGCT--------------------------------TTCCTTGTTTGCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      51679 22 -    566255 CTCTGGGCT--------------------------------TTCCTTGTTTGCT
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     698222 21 -   1411461 CTTTGGGCT--------------------------------ATCCTT-TTTCAT
i proCoq1.NW_012149775v1   I 40 C 0
s otoGar3.GL873550           717138 21 +  18854210 CTTTGGGCT--------------------------------GCCCTT-TTTCAT
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               59012884 27 -  94987271 CACTGGACTA--------------------------CCAGCTTCCTA-GCTGCC
i mm10.chr17               I 21 I 1
s canFam3.chr12              388271 53 +  72498081 ccctgggctgaaggtggtgctaaaccgctaagccacccaggctgcTT-TGTCCT
i canFam3.chr12            I 180 C 0
e micMur3.chr6               666859 382 + 123392446 I

a score=625249.000000
s hg38.chr6_GL000254v2_alt  1906260 41 +   4827813 TTTGAAGCAGAAGTAGACCTCAAT-GT-TATTTCTCCCAGGAG
s panTro5.chr6             30751942 41 + 175400573 TTTGAAGCAGAAGTAGACCTCAAT-GT-TATTTCTCCCAGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31175564 41 + 173848474 TTTGAAGCAGAAGTAGACCTCAAT-GT-TATTTCTCCCAGGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     682540 41 +   2037526 TTTGAAGCAGAAGTAGACCTCAAT-GT-TATTTTTCCCAGGAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75351038 41 + 122973662 TTTGAAGCAGAAGTAGACCTGAAT-GT-TATTTCTCCCAGGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31262722 41 + 172585720 TTTGAAGCAGAAGTAGACCTGAAT-GT-TATTTCTCCCAGGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30551724 41 - 170955103 TTTGAAGCAGAAGTAGACCTGAAT-GT-TATTTCTCCCAGGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     848004 41 +   1495729 TTTGAAGCAGAAGTAGACCTGAAT-GT-TATTTCTCCCAGGAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      71131 41 -    811324 TTTGAAGCAGAAGTAGACCTGAAT-GT-TATTTCTCCCAGGAG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30101677 41 -  71996105 TTTGAAGCAGAAGTAGACCTGAAT-GT-TGTTTCTCCCAGGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     108451 41 +    779361 TTTGAAGCAGAAGTAGACCTGAAT-GT-TATTTCTCCCAGGAG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     771821 41 -   1829203 TTTGAAGCAGAAGTAGACCTGAAT-GT-TACTTCTCCCAGGAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30936518 41 + 171630274 TTTGAAGCAGAAATAGACCTGAAT-GT-TATTTCTCCCAGAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           105724 41 -    750284 TTTGAAGCAGAAATAGACCGGAAT-GT-TATTTCTCCCAAGAG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1353194 41 -   1771730 TTTGAAGCAGAAATAGACCTGAAT-GT-TATTTCTCCCAGGAG
i cebCap1.NW_016107755v1   C 0 I 404
s aotNan1.NW_018511496v1      51701 41 -    566255 TTTGAAGCAGAAATAGACCTGAAT-GT-TATTTCTCCCAGGAG
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               667241 42 + 123392446 TTTGAATCAGAAGTAGACCTGAATGGT-TTTTTTCCCCGGGAG
i micMur3.chr6             I 382 C 0
s proCoq1.NW_012149775v1     698243 43 -   1411461 TCTGAAGCAGAAGTAGACCTGAATGGTCTTTTTTCCCCAGGAG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           717159 41 +  18854210 TTTGAAGCAGAAATTAACCTGAAT-GT-TTTTTCTCCCAGGAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59012912 40 -  94987271 TAAGAGGTACAAATAGTCCTGAAC-GC-TTTTCTTCCCTCAG-
i mm10.chr17               I 1 C 0
s canFam3.chr12              388324 42 +  72498081 TTTGAAGTAGGAATAGCCCTGAAT-GTGTTTTTCTCCCAGGAA
i canFam3.chr12            C 0 C 0

a score=208469.000000
s hg38.chr6_GL000254v2_alt  1906301 13 +   4827813 ---AAAGACTACCATT
s panTro5.chr6             30751983 13 + 175400573 ---AAAGACTACCATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31175605 13 + 173848474 ---AAAGACTACCATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     682581 13 +   2037526 ---AAAGACTACCATT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75351079 13 + 122973662 ---AAAGACTACCATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31262763 13 + 172585720 ---AAAAACTACCATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30551765 13 - 170955103 ---AAAAACTACCATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     848045 13 +   1495729 ---AAAAACTACCATT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      71172 13 -    811324 ---AAAAACTACCATT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30101718 13 -  71996105 ---AAAAACTACCATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     108492 13 +    779361 ---AAAAACTACCATT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     771862 13 -   1829203 ---AAAGACTACCATT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30936559 13 + 171630274 ---AAAGACTACCATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           105765 13 -    750284 ---AAAGACTACCATT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1353639 13 -   1771730 ---aaaGACTACCATT
i cebCap1.NW_016107755v1   I 404 C 0
s aotNan1.NW_018511496v1      51742 13 -    566255 ---AAAGACTACCATT
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               667283 13 + 123392446 ---AAAGACTGCTATT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     698286 13 -   1411461 ---AAAGACTGCTATT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           717200 13 +  18854210 ---AAAGACTACCATT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59012952 13 -  94987271 ---AAAAACAGTCTTT
i mm10.chr17               C 0 I 104
s canFam3.chr12              388366 16 +  72498081 GAGGACTACTACCATT
i canFam3.chr12            C 0 C 0

a score=1257410.000000
s hg38.chr6_GL000254v2_alt  1906314 100 +   4827813 CCAAAATACCTGGAAATGGTAGGGGGTAGAAAATCAGTTCTCCTTCTGTCTCTGCGTTTCATTGTATTT------------------------------GTTTTCTTT--------------------GTTG--CTCAAATTTTTAACTGTT
s panTro5.chr6             30751996 100 + 175400573 CCAAAATACCTGGAAATGGTAGGGGGTAGAAAATCAGTTCTCCTTCTGTCTCTGCGTTTCATTGTATTT------------------------------GTTTTCTTT--------------------GTTG--CTCAAATTTTTAACTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31175618 100 + 173848474 CCAAAATACCTGGAAATGGTAGGGGGTAGAAAATCAGTTCTCCTTCTGTCTCTGCGTTTCATTGTATTT------------------------------GTTTTCTTT--------------------GTTG--CTCAAATTTTTAACTGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     682594 100 +   2037526 CCAAAATACCTGGAAATGGTAGGGGGTAGAAAATCAGTTCTCCTTCTGTCTCTGCGTTTCATTGTATTT------------------------------GTTTTCTTT--------------------GTTG--CTCAAATTTTTAACTGTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75351092 100 + 122973662 CCAAAATACCTGGAAATGGTAGGGGGTAGAAAATCAGTTCTCCTTCTGTCTCTGCGTTTCATTGTATTT------------------------------GTTTTCTTT--------------------ATTG--CTCAAATTTTTAACTGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31262776  98 + 172585720 CCAAAATACCTGGAAATGGTAGGGGGTAGAAAATCAGTTCTCCTTCTGTCTCTGCTTTTCATCATATTT------------------------------GTTTTCTTT--------------------GTTG--CTCAAATTTTTAAC--TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30551778  98 - 170955103 CCAAAATACCTGGAAATGGTAGGGGGTAGAAAATCAGTTCTCCTTCTGTCTCTGCTTTTCATCATATTT------------------------------GTTTTCTTT--------------------GTTG--CTCAAATTTTTAAC--TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     848058  98 +   1495729 CCAAAATACCTGGAAATGGTAGGGGGTAGAAAATCAGTTCTCCTTCTGTCTCTGCTTTTCATCATATTT------------------------------GTTTTCTTT--------------------GTTG--CTCAAATTTTTAAC--TT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      71185  98 -    811324 CCAAAATACCTGGAAATGGTAGGGGGTAGAAAATCAGTTCTCCTTCTGTCTCTGCTTTTCATCATATTT------------------------------GTTTTCTTT--------------------GTTG--CTCAAATTTTTAAC--TT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30101731  98 -  71996105 CCAAAATACCTGGAAATGGTAGGGGGTAGAAAATCAGTTCTCCTTCTGTCTCTGCTTTTCATCATATTT------------------------------GTTTTCTTT--------------------GTTG--CTCAAATTTTTAAC--TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     108505  98 +    779361 CCAAAATACCTGGAAATGGTAGGGGGTAGAAAATCAGTTCTCCTTCTGTCTCTGCTTTTCATCATATTT------------------------------GTTTTCTTT--------------------GTTG--CTCAAATTTTTAAC--TT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     771875  98 -   1829203 CCAAAATACCTGGAAATGGTAGGGGGTAGAAAATCAGTTCTCCTTCTGTCTCTGCTTTTCATCATATTT------------------------------GTTTTCTTT--------------------GTTG--CTCAAATTTTTAAC--TT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30936572  99 + 171630274 TCAAAATACCTGGAAATGGTA-GGGGTAGGAAATCTGTCCTCCTTTTGTCTCTGCTTTTCATTATATTT------------------------------GTTTTCTTT--------------------CTTG--CTCAAATTTTTAAATGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           105778  97 -    750284 CCAAAATACCTGGAAATGGTA-GGGGTAGGAAA--TGTCCTCCTTCTGTCTCTGCTTTTCACTATATTT------------------------------GTTTTCTTT--------------------CTTG--CTCAAATTTTTAAATGTT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1353652  99 -   1771730 CCAAAATACCTGGAAATGGTA-GAGGTAGGAAATCTGTCCTCCTCCTGTCTCTGCTTTTCATTATATTT------------------------------GTTTTCTTT--------------------CTTG--CTTAAATTTTTAAATGTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      51755  99 -    566255 CCAAAATACCTGGAAATGGTA-GGGGTAGGAAATCTGTCCTCCTCCTGTCTCTGCTTTTCATTATATTT------------------------------GTTTTCTTT--------------------TTTG--CTCAAATTTTTAAATGTT
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               667296  91 + 123392446 CCAAAATATCTGGAAATGGTAGGGGATAGGAAATCTGACCTCC---TCTCTCTGCTTTTCATTACCTTT------------------------------G------TT--------------------CTTA--CTCAAATCTTAAACTGCC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     698299  95 -   1411461 CCAAAATACCTGGAAATGGTAGGGGGTAGGAAATGTGACCTCC---TCTCTCTGCTTTTTATTGCATTT------------------------------G--TTCTTT--------------------CTTA--CTCAAATTTTAAACTGCC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           717213  89 +  18854210 CC-AAACACCTGGAAATGGTAGAGGGTAGGAAATCTTGATTGC----CTCTCTGCTTTTCATTATATTT------------------------------C------TT--------------------TTTA--TTCAAATTTTAAACTGCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59013069 147 -  94987271 CCAAAATACTTGTAAACAGTATATAGTAGAAACCTTGGCTT-----TTGCTCTGCATTCTATTACATTTTAGGATTTTTGAGGGGGTCAGAAAGGAAGAGTTGTGTTTGATTGGGGGTGGGTGGAcaagttgacctcaaacttgtggcagtc
i mm10.chr17               I 104 I 232
s canFam3.chr12              388382  95 +  72498081 CTAAAACGTATGGAAATGGTGGGGAGTAGAAAAATTTGACTGC-CCTCTCTCTCCTTTTTGTTACATTT------------------------------GTTTTCTGT--------------------CTTG--C----ATTTTAAACTGCT
i canFam3.chr12            C 0 C 0

a score=8119402.000000
s hg38.chr6_GL000254v2_alt  1906414 502 +   4827813 CCATTTTCACTTGTTCACAGACAAATCCGACCGCCCTGTCTGCCGACATTTTGCCAAAAAGGGCCACTGTCGATATGAGGACCTCTGTGCCTTCTACCATCCAGGCGTCAATGGACCTCCTCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCTCTCTGTGACCTAGCGGCCATTTATTTCTCTGTAGCCCTATGATGGCTACTGTGAGGCTCTTCTA----ACACCCTCAGTCAGTGACACACCCA-TCCCATCCACCACTTCCCCCGTGTGGGGTCCAGAGTGGTGTTGCATCAC--TGGTGCGCGGCATACGCGCTTTCTTCTGATCCAGCCTGTAGAGACTCGCCTTTGGGAC-CCATCTTTGCTTCCTTTCAGTTGCCTCCTGGATCTTCTTTCCCGTCATCAAATGACTGCTGAACAGGAAACCTCTTTGGTGCTGTTTCTTGTGC----ATCTGTCCACCTGTTCCCCAGTATTGCCCTCAATTCCTGAGAGCCCTGGAGC
s panTro5.chr6             30752096 502 + 175400573 CCATTTTCACTTGTTCACAGACAAATCCGACCGCCCTGTCTGCCGACATTTTGCCAAAAAGGGCCACTGTCGATATGAGGACCTCTGTGCCTTCTACCACCCAGGCGTCAATGGACCTCCTCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCTCTCTGTGACCTAGCAGCCATTTATTTCTCTGTAGCCCTATGATGGCTACTGTGAGGCTCTTCTA----ACACCCTCAGTCAGTGACACACCCA-CCCCATCCACCACCTCCCCCGTGTGGGGTCCAGAGTTGTGTTGCATCAC--TGGTGCGCAGCATACGCGCTTTCTTCTGATCCAGCCTGTAGAGACTCGCCTTCGGGAC-CCATCTTTGCTTCCTTTCAGTTGCCTCCTGGATCTTCTTTCCCGTCATCAAATGACTGCTGAACAGGAAACCTCTTTGGTGCTGTTTCTTGTGC----ATCTGTCCACCTGTTCCCCAGTATTGCCCTCAATTCCTGAGAGCCCTGGAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31175718 502 + 173848474 CCATTTTCACTTGTCCACAGACAAATCCGACCGCCCTGTCTGCCGACATTTTGCCAAAAAGGGCCACTGTCGATATGAGGACCTCTGTGCCTTCTACCACCCAGGCGTCAATGGACCTCCTCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCTCTCTGTGACCTAGCAGCCATTTATTTCTCTGTAGCCCTATGATGGCTACTGTGAGGCTCTTCTA----ACACCCTCAGTCAGTGACACACCCA-CCCCATCCACCACCTCCCCCGTGTGGGGTCCAGAGTTGTGTTGCATCAC--TGGTGCGCAGCATACGCGCTTTCTTCTGATCCAGCCTGTAGAGACTCGCCTTCGGGAC-CCATCTTTGCTTCCTTTCAGTTGCCTCCTGGATCTTCTTTCCCGTCATCAAATGACTGCTGAACAGGAAACCTCTTTGGTGCTGTTTCTTGTGC----ATCTGTCCACCTGTTCCCCAGTATTGCCCTCAATTCCTGAGAGCCCTGGAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     682694 502 +   2037526 CCATTTTCACTTGTTCACAGACAAATCCGACCGCCCTGTCTGCCGACATTTTGCCAAAAAGGGCCACTGTCGATATGAGGACCTCTGTGCCTTCTACCACCCAGGCGTCAATGGACCTCCTCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCTCTCTGTGACCTAGCGGCCATTTATTTCTCTGTAGCCCTATGATGGCTACTGTGAGGCTCTTCTA----ACACCCTCAGTCAGTGACACACCCA-CCCCATCCACCACCTCCCCCGTGTGGGGTCCAGAGTTGTGTTGCATCAC--TGGTGCGTGGCATACGCGCTTTCTTCTGATCCAGCCTGTAGAGACTCGCCTTCGGGAC-CCATCTTTGCTTCCTTTCAGTTGCCTCCTGGATCTTCTTTCCCGTCATCAAATGACTGCTGAACAGGAAACCTCTTTGGTGCTGTTTCTTGTGC----ATCTGTCCACCTGTTCCCCAGTATTGCCCTCAATTCCTGAGAGCCCTGGAGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75351192 500 + 122973662 CCATTTTCACTTGTTCACAGACAAATCCGACCGCCCTGTCTGCCGACATTTTGCCAAAAAGGGCCACTGTCGATATGAGGACCTCTGTGCCTTCTACCACCCAGGCGTCAATGGACCTCCTCTGTGAGACTGTGCCTTGCCATCCAGGCTGGAAGGAGCTCTCTGTGACCTAGCAGCCATGTATTTCTCTGTAGCCCTATGATGGCTACTGTGAGGCTCTTCTA----ACACCCTCAGTCAGTGACACACCCA-CCCCATCCACCACCT--CCCGTTTGGGGTCCAGAGTTGTGTTGCATCAC--TGGTGCACGGTATACGTGCTTTCTTCTGATCCAGCCTGTAGAGACTCGCCTTCGGGAC-CCATCTTTGCTTCCCTTCAGTTGCCTCCTGGATCTTCTTTCCCGTCATCAAATGACTGCTGAACAGGAAACCTCTTTGGTGCTGTTTCTTGTGC----ATCTGTCCACCTGTTCCCCAGTATTGCCCTCAATTCCTGAGAGCTCTGGAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31262874 501 + 172585720 TAATTTTCACTTGTTCACAGACAAATCCGACCGCCCTGTCTGCCGACATTTTGCCAAAAAGGGTCACTGTCGATATGAGGACCTCTGTGCCTTCTACCATCCAGGCGTCAATGGACCTCCTCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCTCTCTGTGACCTAGCGGCCATGTATTTCTCTGTAGCCCTGTAATGGCTACTGTGAGGCTCTTCCA----ACACCCTCTGTCAGTGACACACCCA-CCCCATCCACCACCTCCCCAGTTTGGGGTCCAGAGTTGTGTTGCGTCAT--TGGTGCGCGGTGTATGCGCTTTCTTCTGATCCAGCCTTTAGAGACTTGCCTTTGGGAC-CCATCTTTGC-TCCCTTAAGTTGCCTCCTGGATCTTCTTTCCCATCATCAAATGACTGCTGAACAGGAAACCTCTTTGGTGCTGTTTCTTGTGC----ATCTGTCCACCTGTTCCCCAGTACTGCCCTCAATTCCTGAGAGCCCTGGAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30551876 501 - 170955103 TAATTTTCACTTGTTCACAGACAAATCCGACCGCCCTGTCTGCCGACATTTTGCCAAAAAGGGTCACTGTCGATATGAGGACCTCTGTGCCTTCTACCATCCAGGCGTCAATGGACCTCCTCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCTCTCTGTGACCTAGCGGCCATGTATTTCTCTGTAGCCCTGTAATGGCTACTGTGAGGCTCTTCCA----ACACCCTCTGTCAGTGACACACCCA-CCCCATCCACCACCTCCCCAGTTTGGGGTCCAGAGTTGTGTTGCGTCAC--TGGTGCGCGGTGTATGCGCTTTCTTCTGATCCAGCCTTTAGAGACTTGCCTTTGGGAC-CCATCTTTGC-TCCCTTAAGTTGCCTCCTGGATCTTCTTTCCCATCATCAAATGACTGCTGAACAGGAAACCTCTTTGGTGCTGTTTCTTGTGC----ATCTGTCCACCTGTTCCCCAGTACTGCCCTCAATTCCTGAGAGCCCTGGAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     848156 501 +   1495729 TAATTTTCACTTGTTCACAGACAAATCCGACCGCCCTGTCTGCCGACATTTTGCCAAAAAGGGTCACTGTCGATATGAGGACCTCTGTGCCTTCTACCATCCAGGCGTCAATGGACCTCCTCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCTCTCTGTGACCTAGCGGCCATGTATTTCTCTGTAGCCCTGTAATGGCTACTGTGAGGCTCTTCCA----ACACCCTCTGTCAGTGACACACCCA-CCCCATCCACCACCTCCCCAGTTTGGGGTCCAGAGTTGTGTTGCGTCAC--TGGTGCGCGGTGTATGCGCTTTCTTCTGATCCAGCCTTTAGAGACTTGCCTTTGGGAC-CCATCTTTGC-TCCCTTAAGTTGCCTCCTGGATCTTCTTTCCCATCATCAAATGACTGCTGAACAGGAAACCTCTTTGGTGCTGTTTCTTGTGC----ATCTGTCCACCTGTTCCCCAGTACTGCCCTCAATTCCTGAGAGCCCTGGAGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      71283 501 -    811324 TAATTTTCACTTGTTCACAGACAAATCCGACCGCCCTGTCTGCCGACATTTTGCCAAAAAGGGTCACTGTCGATATGAGGACCTCTGTGCCTTCTACCATCCAGGCGTCAATGGACCTCCTCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCTCTCTGTGACCTAGCGGCCATGTATTTCTCTGTAGCCCTGTAATGGCTACTGTGAGGCTCTTCCA----ACACCCTCAGTCAGTGACACACCCA-CCCCATCCACCACCTCCCCAGTTTGGGGTCCAGAGTTGTGTTGCGTCAC--TGGTGCGCGGTGTATGCGCTTTCTTCTGATCCAGCCTTTAGAGACTTGCCTTTGGGAC-CCATCTTTGC-TCCCTTAAGTTGCCTCCTGGATCTTCTTTCCCATCATCAAATGACTGCTGAACAGGAAACCTCTTTGGTGCTGTTTCTTGTGC----ATCTGTCCACCTGTTCCCCAGTACTGCCCTCAATTCCTGAGAGCCCTGGAGC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30101829 501 -  71996105 TAATTTTCACTTGTTCACAGACAAATCCGACCGCCCTGTCTGCCGACATTTTGCCAAAAAGGGTCACTGTCGATATGAGGACCTCTGTGCCTTCTACCATCCAGGCGTCAATGGACCTCCTCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCTCTCTGTGACCTAGCGGCCATGTATTTCTCTGTAGCCCTGTAATGGCTACTGTGAGGCTCTTCCA----ACACCCTCAGTCAGTGACACACCCA-CCCCATCCACCACCTCCCCAGTTTGGGGTCCAGAGTTGTGTTGCGTCAC--TGGTGCGCGGTGTATGCGCTTTCTTCTGATCCAGCCTTTAGAGACTTGCCTTTGGGAC-CCATCTTTGC-TCCCTTAAGTTGCCTCCTGGATCTTCTTTCCCATCATCAAATGACTGCTGAACAGGAAACCTCTTTGGTGCTGTTTCTTGTGC----ATCTGTCCACCTGTTCCCCAGTATTGCCCTCAATTCCTGAGAGCCCTGGAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     108603 501 +    779361 TAATTTTCACTTGTTCACAGACAAATCCGACCGCCCTGTCTGCCGACATTTTGCCAAAAAGGGTCACTGTCGATATGAGGACCTCTGTGCCTTCTACCATCCAGGCGTCAATGGACCTCCTCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCTCTCTGTGACCTAGCGGCCATGTATTTCTCTGTAGCCCTGTAATGGCTACTGTGAGGCTCTTCCA----GCACCCTCAGTCAGTGACACACCCA-CCCCATCCACCACCTCCCCAGTTTGGGGTCCAGAGTTGTGTTGCGTCAC--TGGTGCGCGGTGTATGCGCTTTCTTCTGATCCAGCCTTTAGAGACTTGCCTTTGGGAC-CCATCTTTGC-TCCCTTAAGTTGCCTCCTGGATCTTCTTTCCCATCATCAAATGACTGCTGAACAGGAAACCTCTTTGGTGCTGTTTCTTGTGC----ATCTGTCCACCTGTTCCCCAGTACTGCCCTCAATTCCTGAGAGCCCTGGAGC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     771973 501 -   1829203 TAATTTTCACTTGTTCACAGACAAATCCGACCGCCCTGTCTGCCGACATTTTGCCAAAAAGGGTCACTGTCGATATGAGGACCTCTGTGCCTTCTACCATCCAGGCGTCAATGGACCTCCTCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCTCTCTGTGACCTAGCAGCCATGTATTTCTCTGTAGCCCTGTAATGGCTACTGTGAGGCTCTTCCA----ACACCCTCAGTCAGTGACACACCCA-CCCCATCCACCACCTCCCCAGTTTGGGGTCCAGAGTTGTGTTGCGTCAC--TGGTGCGCGGTATACGTGCTTTCTTCTGATCCAGCCTTTAGAGACTTGCCTTCGGGAC-CCATCTTTGC-TCCCTTAAGTTGCCTCCTGGATCTTCTTTCCCATCATCAAATGACTGCTGAACAGGAAACCTCTTTGGTGCTGTTTCTTGTGC----ATCTGTCCACCTGTTCCCCAGTATTGCCCTCAATTCCTGAGAGCCCTGGAGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30936671 501 + 171630274 CAATTTTCACTTGTTCACAGACAAATCTGACCGCCCTGTCTGCCGACATTTTGCCAAAAAGGGCCACTGTCGATATGAGGACCTCTGTGCCTTCTACCACCCAGGCGTCAATGGACCTCCCCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCTCTCTGTGACCTAGTGGCAATGCATTTCCCTGTAGCCCTGTGATGGCTACTGTGAGGCTCTTCCA----ACACCCTCAGTCAGTGACGCACCCA-CCCCATCCGCCACCTCCCCAATTTGGGGTCCACAGTTGTGTTGTGTCAC--TGGTGCGAGGTGTATGCGCTTTCTTCTGATCCAGCCTGTAGAGACTCACCTTCGGGAC-CCATCTTTGC-TCCCTTCAGTTGCCTCCTGGATCTTCTTTCCCGTCATCAAATAACTGCTGAACAGGAAACTTCTTTGGTGCTGTTTCTTGTGC----ATCTCTCCACCTGCTCCCCAGTACTGCCCTCAATTCCTGAGAGCCCTGGAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           105875 501 -    750284 CAATTTTCACTTGTTCACAGACAAATCTGACCGCCCTGTCTGCCGACATTTTGCCAAAAAGGGCCACTGTCGATATGAGGACCTCTGTGCCTTCTACCACCCAGGCGTCAATGGACCTCCCCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCTCTCTGTGACTTAGCGGCAATGCATTTCCCTGTAGCCCTGTGATGGCTACTGTGAGGCTCTTCCA----ACACCCTCAGTCAGTGACACACCTA-CCCCATCCGCCACCTCCCCAGTTTGGGGTCCACAGTTGTGTTGTGTCAC--TGGTGTGAGGTGTATGCGCTTTCTTCTGATCCAGCCTGTAGAGACTTGCCTTCGGGAC-CCATCTTTGC-TCCCTTCAGTTGCCTCCTGGATCTTCTTTCCCGTCATCAAATGACTGTGGAACAGGAAACTTCTTTGGTGCTGTTTCTTGTGC----ATCTCTCCACCTGCTCCCCAGAATTGCCCTCGATTCCTGAGAGCCCTGGAGT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1353751 488 -   1771730 CAATTTTCACTTGTTCACAGACAAATCTGACCGCCCTGTCTGCCGACATTTTGCCAAAAAGGGCCACTGTCGATATGAGGACCTCTGTGCCTTCTACCACCCAGGCGTCAATGGACCTCCCCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCTCTCTGTGACCTAGCAGCAATGCATTTCCCTGTAGCCCTGTGATGGCTA----------CTTCCA----ACACCCTCAGTCAGTGACACACCCA-CCCCATCCACCACCTCCCCAATTTGGGGTCCACAGTTGTGTTGTGTCAC--TGGTGCGAGGTGTATGCGCTTTCTTCTCATCCAGCCTGTAGAGACTCGCCTTCGGGAC-CCATCTTTGC-TCCCTTCAGTTGCCTCCTGGA---TCTTTCCCGTCATCAAATGACTGCTGAACAGGAAACTTCTTTGGTGCTGTTTCTTGTGC----ATCTCTCCACCTGCTCCCCAGTATTGACCTCAATACCTGAGAGCCCTGGAGT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      51854 501 -    566255 CAATTTTCACTTGTTCACAGACAAATCTGACCGCCCTGTCTGTCGACATTTTGCCAAAAAGGGCCACTGTCGATATGAGGACCTCTGTGCCTTCTACCACCCAGGCGTCAATGGACCTCCCCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGCGCTCTCTGTGACCTAGCGGCAATGCATTTCCCTGTAGCCCTGTGATGGCTACTGTGAGCCTCTTCCA----ACACCCTCAGTCAGTGACACACCCA-CCCCATCCGCCACCTCCCCAATTTGGGGTCCACAGTTGTGTTGTGTCAC--TGGTGCGAGGTGTATGCGCTTTCTTCTGATCCAGCCTGTAGAGACTCGCCTTCGGGAC-CCATCTTTGC-TCCCTTCAGTTGCCTCCTGGATCTTCTTTCCCATCATCAAATGACTGCTGAACAGGAAACTTCTTTGGTGCTGTTTCTTGTGC----ATCTCTCCACCTGCTCCCCAGTATTGCCCTCAATTCCTGAGAGCCTTGGAGT
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               667387 462 + 123392446 CGATTTTCAC-TGTTTACAGACAAATCCGACCGCCCTGTCTGCCGACACTTTGCCAAAAAGGGCCACTGTCGATATGAGGACCTCTGTGCCTTCTACCACCCCGGCGTCAATGGCCCTCCTCTGTGAGACTGTGCCTT-CCATCCCGGCCAGAAGGGGCCCTCTGCGACCTCGAGGCCATGTATTT--------GCCTGTGGAGGCTGCTGAGAGGCTCTTCCACCGGACACCCGCAGTCAGTGACACCT----------------CCGCCCCCGTCTGGGGTGCAGAGTTGCGTTTCAGCACGGCGGTGCGCTGGCGG--CACTTGCTTCTGATCCGGCCTCCAGAGACTTGCCTTCAGGAC-------------CCCTTCGGTTGCCTCCTGG--CTCCTTCCCC---GTCAAATGACTGCTGAACAGGAAACCTCTTTGGTGCTGTTTCTTGCAC----ATCTGTCCACCAGTCCC-CACTGTCACCCTTGATTCCTGAGAGC-CTGGAGC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     698394 483 -   1411461 CAATTTTCAC-TGTTCACAGACAAATCCGACCGCCCTGTCTGCCGACACTTTGCCAAAAAGGGCCACTGTCGATATGAGGACCTCTGTGCCTTCTACCACCCCGGCGTCAATGGACCTCCTCTGTGAGACTGTGCCTT-CCATCCAGGCTGGAAGGAGCCCTGTGTGACCTAGCGGCCATGCATTTCCCCGTGGCCCTGTGGAGGCTGCTGTGAGGCTCTTCCACCCAACACCCGCAGTCAGTGACACCCT---CCTCACCCACCGCCACCCCCATTCAGGGCCCAGAGTTGTGTTTCAGCAC--TGGTGGGCAGCGTG--TGCTTGCTTCTGATCTGGCCTCCAGAGACTTGCCTTCGGGAC-------------CCCTTCGACTGCCTCCTGG--CTCCTTCCCC--TGTCAAATGACTGCTGAACAGGAAACCTCTCTGGTGCTGTTTCTTGTGC----ATCTGTCCACCAGTCCCTCACTATTGCCCTCGATTCCTGAGAGC-CTGGAGC
i proCoq1.NW_012149775v1   C 0 I 19
s otoGar3.GL873550           717302 500 +  18854210 CAATTTTCAC-TGTTCACAGACAAATCCGACCGCCCTGTCTGCCGACACTTTGCCAAAAAGGGCCACTGTCGATATGAAGACCTTTGTGCCTTCTACCACCCAGGCGTCAATGGACCTCCTCTGTGAGAC--TGCTTT-CCTTCCAGGTTGGAAGGAACCGTCTGTGACCTAGCAGCCATGTCTTTCCCTGTGGCCCTGTGGAGGCTACTGTGAGGCTCTTCCACACAACACTCTCAGTCAGTTACACACCAA-CCTCATTCACCACCTCCTGCATTTGGGGTCCAGAATTGTGTTTCATCAC--TGGTGCACAATGTGCACACTTTCTTCTGATACAGCCTCCAGAGACTTGCCTTCAGGACCCCATCTTTGC-TCCCTTCTATTGCCTCCTGGATATCCTTCCCCCTCGTCAAATGACTGCTGAACAGGAAACCTCT-TGGTGCTGTTTCTTGTGC----ATCTGTCTACCAGCCCGCCAGCATTGCCCTTGATCCCTGAGAGC-TTGGAGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59013448 487 -  94987271 CTGTTTTCCCTTATTCACAGACAAGTCTGACCGCCCTGTCTGCCGACACTTTTCTAAGAAGGGCCACTGTCGATATGAAGACCATTGTGCCTTCTACCATCCAGGCGTCAACGGACCTCCTCTGTGAGACTGTGCCTTCCCACCCAGGCTGGAAGGAGCCCTCT--GACCTAGTGGCCATGCA-CTCTCTGTGGCTCCATCTTAGCTACTTGAAGGCTCTTCTG----TCACCTTCAAGCACTGACACATCCA-CCCCTTTCATCATCTCTCCTATTTGAGGTCCAGAGCTGTGAT-TGTCAC--TAGTGCACAGTGCA--CACTGTCTTCTGATCCAGGCTGTAGAGA----CCTTCGGGAC-CCCATCTTGCTACTTTTCCACTGCCTCCTGGATCTTC---CCCTCTGCCAAAAGACTGCTCAACAGGAAAC--CTTTGGTGCTGTTTCTTGTGC----ATTTGTCCACCTGTCCCTCGGTATTGCCCTCAGTTCCCAAGAGCCCTGGAGC
i mm10.chr17               I 232 C 0
s canFam3.chr12              388477 501 +  72498081 CAATTTTCACTTGTTCACAGACAAATCCAACCGCCCCGTCTGCCGACACTTTGCCAAAAAGGGCCACTGTCGATATGAGGACCTCTGTGCCTTCTACCACCCAGGCGTCAATGGACCTCCTCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCCCTCT--GACCTAGCGGCCATATATTTCCCTGTGGCCCTGTGACGGCTACTGTGAGGCTGTTCCACCCACCACCCTCAG--------ACACCCACCCCCATCTCTCACCTCCCCCATTTGGGGTCCAGAGTTTTGTTTCATCAC--TGGTGCCCAGCGTGTGGGCTTTCTTCCGATTCAGCCTCCAGAGACTCGCCTTCAGGACCCCACCATTGC-TCTCTTCAACTGCCTCCTGGATCCTCTTCCCCTTCGCCGATTGACTGCTCAACAGGAAACCTCTTTGGTGCTGTTTCTTGTGCATCTATCTGTCCACCCAGCCCTCGGCACTGCCCTCGATTCCTAAGAGCCCTGGAGC
i canFam3.chr12            C 0 C 0

a score=321375.000000
s hg38.chr6_GL000254v2_alt  1906916 23 +   4827813 GGTTTCCTACCATTCCCTTCTTT
s panTro5.chr6             30752598 23 + 175400573 GGTTTCCTACCATTCCCTTCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31176220 23 + 173848474 GGTTTCCTACCATTCCCTTCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     683196 23 +   2037526 GGTTTCCTACCATTCCCTTCTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75351692 23 + 122973662 GGTTTCCTACCATTCCCTTCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31263375 23 + 172585720 GGTTTCCTACCATTCCCTTCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30552377 23 - 170955103 GGTTTCCTACCATTCCCTTCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     848657 23 +   1495729 GGTTTCCTACCATTCCCTTCTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      71784 23 -    811324 GGTTTCCTACCATTCCCTTCTTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30102330 23 -  71996105 GGTTTCCTACCATTCCCTTCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     109104 23 +    779361 GGTTTCCTACCATTCCCTTCTTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     772474 23 -   1829203 AGTTTCCTACCATTCCCTTCTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30937172 23 + 171630274 GGTTTCTTACCATTCCCTTCTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           106376 23 -    750284 GGTTTCCTACCATTCCCTTCTTC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1354239 23 -   1771730 GGTTTCCTACCATTCCCTTCTTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      52355 23 -    566255 GGTTTCCTACCATTCCCTTCTTC
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               667849 20 + 123392446 GGATTCCTACCACTCCCTTC---
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550           717802 20 +  18854210 GGTTTCCTACCATTCCCTTC---
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59013935 14 -  94987271 AGTCTCTTATCCTC---------
i mm10.chr17               C 0 C 0
s canFam3.chr12              388978 23 +  72498081 AGTTTCCTGCCATTCCCTTCTTC
i canFam3.chr12            C 0 C 0
e proCoq1.NW_012149775v1     698877 19 -   1411461 I

a score=13737672.000000
s hg38.chr6_GL000254v2_alt  1906939 882 +   4827813 TAGCTGC-----TTGTTTTAAGTCCTTTTTATGTGACATTCCCTACCCCCAATGTTGTCAGCTGCT-TGTGAAACTCAGCCAGGTTGTCTAACCT-GGGGTCAAGTTTGGGTGACTGGTGCAGAGTTACTTCCTAAAAGGCCACTCTCCCTGCCTTTGGATTTCATAGTTTCTCTGTCAGTAGCATGATCCCCACCGCTATGGTCTATCTATGATCACCGTGCTTTGTGAAACTGTGCATCCCCT----TGTAGCCTTTCTCAGTGTCCGTGGCA-TTTT-------------------TGTGACTTCCCAGCACTAGAATAAGTTTTCCTGCCAAAATGAGTGAGGCGCTTGGTGCCCTCTGGACTTT-C--C-CACTTCCCAACATGGGAGAATTGTG-AACTTTCCATCAGACTGCCTCCCTGGCCCTCCCCATTCTTCTCCTGTTGGTTATTCTGAGTCTGACACAGACCCATGACATGTCTTATAAAGCCTCCAATGGCTTTATCCTACCTAGATCCCTTCCAGCCCATTTTAATTAGACTATGTCATTGTGAGGCCACCAGTCCATTCATTTGAATTCTGTGAATCTCCACCTTGCCTATCTTTGGGTAGAAGCTGGACAGTACTGTTGCCCTCTTC-CAA-TCCTCTTCCCCTACATCCCTGGCACTGGTTGTTTTCTGTGAAAACAGCAGTGAACAGGTTCAGTTTTGAACTGGCCCTGAGGAAATGGGTCAGGAGTTGTATTGGCAAGAGGGA-GGGGTGAGAGCTGTTGGAGAACTGAGAATGAGG-----ttttt-tttt---tttttttctttttaac----tttttttATATTAGTAATAAATGCAGTGG-AAACCAGCATTTTATTTAATCCCTGTGTTCTAGTCATCTCTGGAGTTGCAGATG--------AAGCTG---TTCTCACCTGG
s panTro5.chr6             30752621 879 + 175400573 TAGCTGC-----TTGTTTTAAGTCCTTTTTATGTGACATTCCCTACCCCCAATGTTGTCAGCTGCT-TGTGAAACTCAGCCAGGTTGTCTAACCT-GGGGTCAAGTTTGGGTGACTGGTGCAGAGTTACTTCCTAAAAGGCCACTCTCCCTGCCTTTGGATTTCATAGTTTCTCTGTCAGTAGCATGATCCCCACCGCTATGG----TCTATGATCACCGTGCTTTGTGAAACTGTGCATCCCCT----TGTAGCCTTTCTCAGTGTCCGTGGCA-TTTT-------------------TGTGACTTCCCAGCACTAGAATAAGTTTTCCTGCCAAAATGAGTGAGGCGCTTGGTGCCCTCTGGACTTT-C--C-CACTTCCCAACATGGGAGAATTGTG-AACTTTCCATCAGACTGCCTCCCTGGCCCTCCCCATTCTTCTCCTGTTGGTTATTCTGAGTCTGACACAGACCCATGACATGTCTTATGAAGCCTCCAATGGCTTTATCCTACCTAGATCCCTTCCAGCCCATTTTAATTAGACTATGTTATTGTGAGGCCACCAGTCCATTCATTTGAATTCTGTGAATCTCCACCTTGCCTATCTTTGGGTAGAACCTGGACAGTACTATTGCCCTCTTC-CAA-TCCTCTTCCCCTACATCCCTGGCACTGGTTGTTTTCTGTGAAAACAGCAGTGAACAGGTTCAGTTTTGAACTGGCCCTGAGGAAATGGGTCAGGAGTTGTATTGGCAAGAGGGA-GGGGTGAGAGCTGTTGGAGAACTGAGAATGAGG-----tttttgtttt---ttttttcctttttaac----tttttttATATTAGTAATAAATGCAGTGG-AAACCAGCATTTTATTTAATCCCTGTGTTCTAGTCATCTCTGGAGGTGCAGATG--------AAGCTG---TTCTCACCTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31176243 877 + 173848474 TAGCTGC-----TTGTTTTAAGTCCTTTTTATGTGACATTCCCTACCCCCAATGTTGTCAGCTGCT-TGTGAAACTCAGCCAGGTTGTCTAACCT-GGGGTCAAGTTTGGGTGACTGGTGCAGAGTTACTTCCTAAAAGGCCACTCTCCCTGCCTTTGGATTTCATAGTTTCTCTGTCAGTAGCATGATCCCCACCGCTATGG----TCTATGATCACCGTGCTTTGTGAAACTGTGCATCCCCT----TGTAGCCTTTCTCAGTGTCCGTGGCA-TTTT-------------------TGTGACTTCCCAGCACTAGAATAAGTTTTCCTGCCAAAATGAGTGAGGCGCTTGGTGCCCTCTGGACTTT-C--C-CACTTCCCAACATGGGAGAATTGTG-AACTTTCCATCAGACTGCCTCCCTGGCCCTCCCCATTCTTCTCCTGTTGGTTATTCTGAGTCTGACACAGACCCATGACATGTCTTATAAAGCCTCCAATGGCTTTATCCTACCTAGATCCCTTCCAGCCCATTTTAATTAGACTATGTTATTGTGAGGCCACCAGTCCATTCATTTGAATTCTGTGAATCTCCACCTTGCCTATCTTTGGGTAGAACCTGGACAGTACTATTGCCCTCTTC-CAA-TCCTCTTCCCCTACATCCCTGGCACTGGTTGTTTTCTGTGAAAACAGCAGTGAACAGGTTCAGTTTTGAACTGGCCCTGAGGAAATGGGTCAGGAGTTGTATTGGCAAGAGGGA-GGGGTGAGAGCTGTTGGAGAACTGAGAATGAGG-----TTTT--TGTT---TTTTTTCCTTTTTAAC----TTTTTTTATATTAGTAATAAATGCAGTGG-AAACCAGCATTTTATTTAATCCCTGTGTTCTAGTCATCTCTGGAGGTGCAGATG--------AAGCTG---TTCTCACCTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     683219 877 +   2037526 TAGCTGC-----TTGCTTTAAGTCCTTTTTATGTGACATTCCCTACCCCCAATGTTGTCAGCTGCT-TGTGAAACTCAGCCAGGTTGTCTAACCT-GGGGTCAAGTTTGGGTGACTGGTGCAGAGTTACTTCCTAAAAGGCCACTCTCCCTGCCTTTGGATTTCATAGTTTCTCTGTCAGTAGCATGATCCCCACCGCTATGG----TCTATGATCACCGTGCTTTGTGAAACTGTGCATCCCCT----TGTAGCCTTTCTCAGTGTCCGTGGCA-TTTT-------------------TGTGACTTCCCAGCACTAGAATAAGTTTTCCTGCCAAAATGAGTGAGGCGCTTGGTGCCCTCTGGACTTT-C--C-CACTTCCCAACATGGGAGAATTGTG-AACTTTCCATCAGACTGCCTCCCTGGCCCTCCCCATTCTTCTCCTGTTGGTTATTCTGAGTCTGACACAGACCCATGACATGTCTTATAAAGCCTCCAATGGCTTTATCCTACCTAGATCCCTTCCAGCCCATTTTAATTAGACTATGTCATTGTGAGGCCACCAGTCCATTCATTTGAATTCTGTGAATCTCCACCTTGCCTATCTTTGGGTAGAACCTGGACAGTACTGTTGCCCTCTTC-CAA-TCCTCTTCCCCTACATCCCTGGCACTGGTTGTTTTCTGTGAAAACAGCAGTGAACAGGTTCAGTTCTGAACTGGCCCTGAGGAAATGGGTCAGGAGTTGTATTGGCAAGAGGGA-AGGGTGAGAGCTGTTGGAGAACTGAGAATGAGG-----tttt--tttt---tttttttctttttaac----tttttttATATTAGTAATAAATGCAGTGG-AAACCAGCATTTTATTTAATCCCTGTGTTCTAGTCATCTCTGGAGGTGCAGATG--------AAGCTG---TTCTCACCTGG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75351715 871 + 122973662 TAGCTGC-----TTGTTTTAAGTCCTTTTTATGTGACATTCCCTACCCCCAGTGTTGTCAGCTGCT-CGTGAA----AGCCAGGTTGTCTAACCT-GGGGTCAAGTTTGGGTGACTGGTGCAGAGTTACTTCCTAAAAGGCCACTCTCCCTGCTTTTGGATTTCATAGTTTCTCCGTCAGTAGCATGATCCCTACCGCTATGG----TCTATGATCACCGTGCTTTGTGAAACTGTGCATCCCCT----TGTAGCCTTTCTCAGTGTCCGTGGCA-TTTT-------------------TGTGACTTCCCAGCACTAGAATAAGTTTTCCTGCCAAAATGAGTGAGGCGCTTGGTGCCCTCTGGACTTT-C--C-CACTTCCCAACATGGGAGAATTGTG-AACTTTCCATCAGACTGCCTCCCTGGCCCTCCCCATTCTTCTCCTGTTGGTTATTCTGGGTCTGACACAGGCTCATGACATGTCTTATAAAGCCTCCAATGGCTTTATCCTACCTAGATCCCTTCCAGCCCATTTTAGTTAGACTATGTCATTGTGAGGCCACCAGTCCATTCATTTGAATTCTGTGAATCTCCACCTTGCCTATCTTTGGGTGGAACCTGGACAGTACTGTCGCCCTCTTC-CAA-CCCTCTTCCCCTACATCCCTGGCACTGGTTGTTTTCTGTGAAAACAGCAGTGAACAGGTTCAGTTTTGAACTGGCCCTGAGGAAATGGGTCAGGAGTTGTATTGGCAAGAGGGA-GGGATGAGAGCTGTTGAAGAACTGAGAATGAGG-----tt----ttat---tttttttctttttaac----tttttttATATTAGTAATAAATGCAGTGG-AAACCAGCATTTTATTTAATCCCTGTGTTCTAGTCATCTCTGGAGGTGCAGATG--------AAGCTG---TTCTCACCTGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31263398 875 + 172585720 TAGCTGC-----TTGTTTTAAGTCCTTTTTATGTGACATTCCCTACCCCCAATGTTGTCAGCTGCT-TATGAAACTCAGCCAGGTTGTCTAACCT-GGGGTCAAGTTTGGGTGACTGGTGCAGAGTTACTTCCTAAAAGGCCACTCTCCCTGCTTTTGGATTTCGTAGTTTCTCTGTCAGTAGCATGAT-CCCACCGCCGTGG----TCTATGATCACCGTGCTTTGTGAAACTGTGCATCCCCT----TGTAGCCTCTCTCAGTGTCTGTGGCA-TTTT-------------------TGTGACTTCCCAGCACTAGAATAAGTTTTCCTGCCAAAACGAGTGAGGTGCTTGACGCCCTCTGGACTTT-C--C-CACTTCCCAACATGGAAGAATTGTG-AACTTTCCATCAGACTGCCTCCCTGGCCCTCCCCATTCTTCTCCTGTTGGTTACTCTGGGTCTGACACAGGCCCATGAGATGTCTTATAAAGCCTCCAATGGCTTTATCCTACCTAGATCCCTTCCAGCCCATTTTACTTAGACTATGTCATTGTGAGACCACCAGTCCTTTCATTTGAATTCTGTGAATCTCCACCTTGCCTATCTTTGGGTGGAACCTGGACAGTACTGTCGCCTTCTTC-CAA-CCCTCTTCCCCTACATCCCTGGCACTGGTTGTTTTCTGTGAAAACAGCAGTGAACAGGTTCAGTTTTGAACTGGCCCTGAGGAAACAGGTCAGGAGTTGTATTGGCAAGAGGGA-GGGATGAGAGTTGTTGGAGAACTGAGAATGAGG-----TGtt--tt-----tttttttttttttaaca---tttttttATATTAGTAATAAATGCAGTGG-AAACCAGCATTTTCTTTAATCCCTGTGTTCTAGTCATCTCTGGAGGTACAGATG--------AAGCTG---TTCTCACCTGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30552400 877 - 170955103 TAGCTGC-----TTGTTTTAAGTCCTTTTTATGTGACATTCCCTACCCCCAATGTTGTCAGCTGCT-TATGAAACTCAGCCAGGTTGTCTAACCT-GGGGTCAAGTTTGGGTGACTGGTGCAGAGTTACTTCCTAAAAGGCCACTCTCCCTGCTTTTGGATTTCGTAGTTTCTCTGTCAGTAGCATGATCCCCACCGCCGTGG----TCTATGATCACCGTGCTTTGTGAAACTGTGCATCCCCT----TGTAGCCTCTCTCAGTGTCTGTGGCA-TTTT-------------------TGTGACTTCCCAGCACTAGAATAAGTTTTCCTGCCAAAACGAGTGAGGTGCTTGACGCCCTCTGGACTTT-C--C-CACTTCCCAACATGGAAGAATTGTG-AACTTTCCATCAGACTGCCTCCCTGGCCCTCCCCATTCTTCTCCTGTTGGTTACTCTGGGTCTGACACAGGCCCATGAGATGTCTTATAAAGCCTCCAATGGCTTTATCCTACCTAGATCCCTTCCAGCCCATTTTACTTAGACTATGTCATTGTGAGACCACCAGTCCTTTCATTTGAATTCTGTGAATCTCCACCTTGCCTATCTTTGGGTGGAACCTGGACAGTACTGTCGCCTTCTTC-CAA-CCCTCTTCCCCTACATCCCTGGCACTGGTTGTTTTCTGTGAAAACAGCAGTGAACAGGTTCAGTTTTGAACTGGCCCTGAGGAAACAGGTCAGGAGTTGTATTGGCAAGAGGGA-GGGATGAGAGTTGTTGGAGAACTGAGAATGAGG-----TGtt--ttt----ttttttttttttAAACA---TTTTTTTATATTAGTAATAAATGCAGTGG-AAACCAGCATTTTCTTTAATCCCTGTGTTCTAGTCATCTCTGGAGGTACAGATG--------AAGCTG---TTCTCACCTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     848680 880 +   1495729 TAGCTGC-----TTGTTTTAAGTCCTTTTTATGTGACATTCCCTACCCCCAATGTTGTCAGCTGCT-TATGAAACTCAGCCAGGTTGTCTAACCT-GGGGTCAAGTTTGGGTGACTGGTGCAGAGTTACTTCCTAAAAGGCCACTCTCCCTGCTTTTGGATTTCGTAGTTTCTCTGTCAGTAGCATGATCCCCACCGCCGTGG----TCTATGATCACCGTGCTTTGTGAAACTGTGCATCCCCT----TGTAGCCTCTCTCAGTGTCTGTGGCA-TTTT-------------------TGTGACTTCCCAGCACTAGAATAAGTTTTCCTGCCAAAACGAGTGAGGCGCTTGACGCCCTCTGGACTTT-C--C-CACTTCCCAACATGGAAGAATTGTG-AACTTTCCATCAGACTGCCTCCCTGGCCCTCCCCATTCTTCTCCTGTTGGTTACTCTGGGTCTGACACAGGCCCATGAGATGTCTTATAAAGCCTCCAATGGCTTTATCCTACCTAGATCCCTTCCAGCCCATTTTACTTAGACTATGTCATTGTGAGACCACCAGTCCTTTCATTTGAATTCTGTGAATCTCCACCTTGCCTATCTTTGGGTGGAACCTGGACAGTACTGTCGCCTTCTTC-CAA-CCCTCTTCCCCTACATCCCTGGCACTGGTTGTTTTCTGTGAAAACAGCAGTGAACAGGTTCAGTTTTGAACTGGCCCTGAGGAAACAGGTCAGGAGTTGTATTGGCAAGAGGGA-GGGATGAGAGTTGTTGGAGAACTGAGAATGAGG-----TGtt--ttttttgtttttttttttttaac----tttttttATATTAGTAATAAATGCAGTGG-AAACCAGCATTTTCTTTAATCCCTGTGTTCTAGTCATCTCTGGAGGTACAGATG--------AAGCTG---TTCTCACCTGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      71807 880 -    811324 TAGCTGC-----TTGTTTTAAGTCCTTTTTATGTGACATTCCCTACCCCCAATGTTGTCAGCTGCT-TGTGAAACTCAGCCAGGTTGTCTAACCT-GGGGTCAAGTTTGGGTGACTGGTGCAGAGTTACTTCCTAAAAGGCCACTCTCCCTGCTTTTGGATTTCGTAGTTTCTCTGTCAGTAGCATGATCCCCACCACCGTGG----TCTATGATCACCGTGCTTTGTGAAACTGTGCATCCCCT----TGTAGCCTCTCTCAGTGTCTGTGGCA-TTTT-------------------TGTGACTTCCCAGCACTAGAATAAGTTTTCCTGCCAAAACGAATGAGGCGCTTGACGCCCTCTGGACTTT-C--C-CACTTCCCAACATGGAAGAATTGTG-AACTTTCCATCAGACTGCCTCCCTGGCCCTCCCCATTCTTCTCCTGTTGGTTACTCTGGGTCTGACACAGGCCCATGAGATGTCTTATAAAGCATCCAATGGCTTTATCCTACCTAGATCCCTTCCAGCCCATTTTACTTAGACTATGTCATTGTGAGGCCACCAGTCCTTTCATTTGAATTCTGTGAATCTCCACCTTGCCTATCTTTGGGTGGAACCTGGACAGTACTGTCGCCTTCTTC-CAG-CCCTCTTCCCCTACATCCCTGGCACTGGTTGTTTTCTGTGAAAACAGCAGTGAACAGGTTCAGTTTTGAACTGGCCCTGAGGAAACAGGTCAGGAGTTGTATTGGCAAGAGGGA-GGGATGAGAGTTGTTGGAGAACTGAGAATGAGG-----TGtt--tttttt-tttttttctttttaaca---tttttttATATTAGTAATAAATGCAGTGG-AAACCAGCATTTTCTTTAATCCCTGTGTTCTAGTCATCTCTGGAGGTACAGATG--------AAGCTG---TTCTCACCTGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30102353 881 -  71996105 TAGCTGC-----TTGTTTTAAGTCCTTTTTATGTGACATTCCCTACCCCCAATGTTGTCAGCTGCT-TGTGAAACTCAGCCAGGTTGTCTAACCT-GGGGTCAAGTTTGGGTGCCTGGTGCAGAGTTACTTCCTAAAAGGCCACTCTCCCTGCTTTTGGATTTCGTAGTTTCTCTGTCAGTAGCATGATCCCCACTGCCGTGG----TCTATGATCACCGTGCTTTGTGAAACTGTGCATCCCCT----TGTAGCCTCTCTCAGTGTCTGTGGCA-TTTT-------------------TGTGACTTCCCAGCACTAGAATAAGTTTTCCTGCCAAAACGAGTGAGGCGCTTGACGCCCTCTGGACTTT-C--C-CACTTCCCAACATGGAAGAATTGTG-AACTTTCCATCAGACTGCCTCCCTGGGCCTCCCCATTCTTCTCCTGTTGGTTACTCTGGGTCTGACACAGGCCCATGAGATGTCTTATAAAGCCTCCAATGGCTTTATCCTACCTAGATCCCTTCCAGCCCATTTTACTTAGACTATGTCATTGTGAGGTCACCAGTCCTTTCATTTGAATTCTGTGAATCTCCACCTTGCCTATCTTTGGGTGGAACCTGGACAGTACTGTCGCCTTCTTC-CAA-CCCTCTTCCCCTACATCCCTGGCACTGGTTGTTTTCTGTGAAAACAGCAGTGAACAGGTTCAGTTTTGAACTGGCCCTGAGGAAACAGGTCAGGAGTTGTATTGGCAA-AGGGA-GGGATGAGAGTTGTTGGAGAACTGAGAATGAGGTGttttgtt--ttt----tttttttctttttaaca---tttttttATATTAGTAATAAATGCAGTGG-AAACCAGCATTTTCTTTAATCCCTGTGTTCTAGTCATCTCTGGAGGTACAGATG--------AAGCTG---TTCTCACCTGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     109127 875 +    779361 TAGCTGC-----TTGTTTTAAGTCCTTTTTATGTGACATTCCCTACCCCCAATGTTGTCAGCTGCT-TGTGAAACTCAGCCAGGTTGTCTAACCT-GGGGTCAAGTTTGGGTGACTGGTGC--AGTTACTTCCTAAAAGGCCACTCTCCCTGCTTTTGGATTTCGTAGTTTCTCTGTCAGTAGCATGATCCCCACCACCGTGG----TCTATGATCACCGTGCTTTGTGAAACTGTGCATCCCCT----TGTAGCCTCTCTCAGTGTCTGTGGCA-TTTT-------------------TGTGACTTCCCAGCACTAGAATAAGTTTTCCTGCCAAAACGAGTGAGGCGCTTGACGCCCTCTGGACTTT-C--C-CACTTCCCAACATGGAAGAATTGTG-AACTTTCCATCAGACTGCCTCCCTGGCCCTCCCCATTCTTCTCCTGTTGGTTACTCTGGGTCTGACACAGGCCCATGAGATGTCTTATAAAGCATCCAATGGCTTTATCCTACCTAGATCCCTTCCAGCCCATTTTACTTAGACTATGTCATTGTGAGGCCACCAGTCCTTTCATTTGAATTCTGTGAATCTCCACCTTGCCTATCTTTGGGTGGAACCTGGACAGTACTGTCGCCTTCTTC-CAA-CCCTCTTCCCCTACATCCCTGGCACTGGTTGTTTTCTGTGAAAACAGCAGTGAACAGGTTCAGTTTTGAACTGGCCCTGAGGAAACAGGTCAGGAGTTGTATTGGCAAGAGGGA-GGGATGAGAGTTGTTGGAGAACTGAGAATGAGG-----TGtt--ttt----tttttttctttttaaca---tttttttATATTAGTAATAAATGCAGTGG-AAACCAGCATTTTCTTTAATCCCTGTGTTCTAGTCATCTCTGGAGGTACAGATG--------AAGCTG---TTCTCACCTGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     772497 880 -   1829203 TAGCTGC-----TTGTTTTAAGTCCTTTTTATGTGACATTCCCTACCCCCAATGTTGTCAGCTGCT-TGTGAAACTCAGCCAGGTTGTCTAACCT-GGGGTCAAGTTTGGGTGACTGGTGCAGAGTTACTTCCTAAAAGGCCACTCTCCCTGCTTTTGGATTTCGTAGTTTCTCTGTCAGTAGCATGATCCCCACAGCCGTGG----TCTATGATCACAGTGCTTTGTGAAACTGTGCATCCCCT----TGTAGCCTCTCTCAGTGTCTGTGGCA-TTTT-------------------TGTGACTTCCCAGCACTAGAATAAGTTTTCCTGCCAAAACGAGTGAGGCGCTTGACGCCCTCTGGACTTT-C--C-CACTTCCCAACATGGAAGAATTGTG-AACTTTCCATCAGACTGCCTCCCTGGCCCTCCCCATTCTTCTCCTGTTGGTTACTCTGGGTCTGACACAGGCCCATGAGATGTCTTAAAAAGCCTCCAATGGCTTTGTCCTACCTAGATCCCTTCCCGCCCATTTTATTTAGACTATGTCATTGTGAGGCCACCAGTCCTTTCATTTGAATTCTGTGAATCTCCACCTTGCCTATCTTTGGGTGGAACCTGGACAGTACTGTCGCCTTCTTC-CAA-CCCTCTTCCCCTACATCCCTGGCACTGGTTGTTTTCTGTGAAAACAGCAGTGAACAGGTTCAGTTTTGAACTGGCCCTGAGGAAACAGGTCAGGAGTTGTATTGGCAAGAGGAA-GGGATGAGAGTTGTTGGAGAACTGAGAATGAGG-----TGTT--TTGGTT-TTTTTTTCTTTTTAACA---TTTTTTTATATTAGTAATAAATGCAGTAG-AAACCAGCATTTTCTTTAATCCCTGTGTTCTAGTCATCTCTGGAGGTACAGATG--------AAGCTG---TTTTCACCTGG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30937195 869 + 171630274 TAGCTGCTTGTTTTGTTTTAAGTCATTTTTATGTGACAACTCCTACCCCCAATGTTGTCAGCTGCT-TGTGAAA--CTGCCAGGTTGTCTAACCT-GGGGTCAGGTTTTGGTGACTGGTGCAGAGTTACTTCCTACAAGGCCACTCTCCCTACTTTTGGATTTCATAGTTT--CTGTCAGTAGCATGAGCCCCACCACTATGG----TCTGTGATCACCGTGCTTTGTGGAACTGTGCATCCCCT----TGTAGCCTTTTTCAGTGTCCATGGCA-TTTT-------------------TGTGACTTCCCAACACTAGAGTAAGTTTTTCTGCCAAAATGAGTGAGGCTCTTGGTGCCCTCTAGCCTTT-C--C-CACCTCCCAACGTGGGAGAATTGTG-AACTTTCCATCAAACTGCTTCCCTGGCCCTCCCCA---TTCTCCTGTTGGTTATTCTGGGTCTGACACAGGCCCTTGAGATGTCATGTAAAGCCTCCAGTGGCTTTATCCTACCTAGATCCCTTCTAGCCCATTTTAGTTAGAC--TGTCATTGTGAATGCACCAGTCATTTCATTTGAATTCTGTGAATCTCCACCTTGCCTATGTTTGGGTGGAAACTGGACAGTACTGTTGCCCTCTTC-CAACCCCTCTTCCCCTACAT-CCTGGTACTGGTTGTTTTCTGTGAAAACAGCAGTGAACAGGTTCCGTTTTGAACTGACCCTGAGGAAGTGAGTCAGGAGCTGTACTGGCAAGAGGGAGGGGATGAGAGCTATTGGAGAACTGAGAATGAGG-----TTTT-----------TTTTTCTTTTTAACA---TTTTTTTATATTAGTAATAAACGCAGTGG-AAACCAGCATTTTCTTTAATCCCTGTGTTCTAGTCATCTCTGGAGATGCAGATG--------AAGCTG---TTCTTACCTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           106399 869 -    750284 TAGCTGC-----TTGTTTTAAGTCATTTTTATGTGACATCTCATACCCCCAGTGTTGTCAGCTGCT-TGTGAAACTCTGCCAGGTTGTCTAACCT-GGGGTCAAGTTTGGGTGACTGGTGCAGAGCTACTTCCTACAAGGCCACTTTCCCTACTTTTGGATTTCGTAGTTTCGCTGTCAGTAGCATGATCCCCACCACTATGG----TCTGTGATCACCGTGCTTTGTGGAACTGTGCATCCCCT----TGTAGCCTTTCTCAGTGTCCATGGCA-TTTT-------------------TGTGACTTCCCAACACTAGAATAAGTTTTTCTGCCAAAATGAGTTAGGCTCTTGGTGCCCTCTAGACTTT-C--C-CACCTCCCAACATGGGAGAATTGTG-AACCTTCCATCAAACTGCCTCCCTGGGCCTCCCCA---TTCTCCTGTTGGTTATTCTGGGTCTGACACAGGCCCTTGAGATGTCATGTAAAGCCTCCAGTGGCTT--TCCTACGTAGATCCCTTCTAGCCCATTTTAGTTAGAC--TGTCATTGTGAATGCACCAGTCATTTCATTTGAATTCTGTGAATCTCCACCTTGCCTATGTTTGGGTGGAAACTGGACAGTACTGTTGCCCTCTTC-CAA-CCCTCTTTCCCTACAT-CCTGGTACTGGTTGTTTTCTGTGAAAACAGCAGTGAACAGGTTCCGTTTTGAACTGACCCTGAGGAAATGAGTCAGGAGCTGTACTGGCAAGAGGGAGGGGATGAGAGCTGTTGGAGAACTGAGAATGAGG-----TTTT----------CTTTTTCTTTTTAACATTTTTTTTTTATATTAGTAATAAACACAGTGG-AAACCAGCATTTTCTTTAATCCCTGTGTTCTAGTCATCTCTGGAGAGGCAGATG--------AAGCTG---TTCTTACCTGG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1354262 867 -   1771730 TAGCTGC-----TTGTTTTAAGTCATTTTTATGTGACATCTCCTACCCCCAATGTTGTCAGCTGCT-TGTGAAACTCTGCCAGGTTGTCTAACCT-GGGGTCAAGTTTGGGTGACTGGTGCAGAGTTACTTCCTACAAGGCCAC--TCCCTACTTTTGGATTTCGTAGTTT--CTGTCAGTAGCATGATCCCCACCACTATGG----TCTGTGATCACTGTGCTTTGTGAAACTGTGCATCCTCT----TGTAGCCTTTCTCAGTGTCCATGGCA-TTTT-------------------TGTGACTTCCCAACACTAGAATAAGTTTTTCTGCCAAAATGAGTGAGGATCTTGGTGCCCTCTAGACTTT-C--C-CACCTCCCAACATGGGAGAATTGTG-AACTTTCCATCAAACTGCCTCCCTGGCCCTCTCCA---TTCTCCTGTTGGTTATTCTGGGTCTGACACAGGCCCTTAAGATGTCATGTAAAGCCTCCAGTGGCTTTATCCTACCTAGATCCCTTCTAGCCCATTTTAGTTAGAC--TGTCATTGTGAATGCACCAGTCATTTCATTTGAATTCTGTGAATCTCCACCTTGCCTATGTTTGGGTGGAACCTGGACAGTACTGTTGCCCTCTTC-CAA-CCCTCTCCCCCTACAT-CCTGGTACTGGTTGTTTTCTGTGAAAACAGTAGTGAACAGGTTCCGTTTTGAACTGACCCTGAGGAAATGAGTCAGGAGCTGTGCTGGCAAGAGGGAGGGGATGAGAGTTGTTGGAGAACTGAGAATGAGG-----TTTT----------CTTTTTCTTTTTAACATTTTTTTTTTATATTAGTAATAAACGCAGTGG-AAACCAGCATTTTCTTTAATCCCTGTGTTCTAGTCATCTCTGGAGATGCAGATG--------AAGGTG---TTCTTACCTGG
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      52378 874 -    566255 TAGCTGC-----TTGTTTTAAGTCATTTTTAAGTGACATCTACTACCCCCACTGTTGTCAGCTGCT-TGTGAAACTCTACCAGGTTGTCTAACCT-GGGGTCAAGTTTGGGTGACTGGTGCAGAGTTACTTCCTACAAGGCCACTCTCCCTACTTTTGGATTTCGTAGTTTCTCTGTCAGTAGCATGATCCCCACCACTATGG----TCTGTGATCACCGTGCTTTGTGGAACTGTGCATCCCCT----TGTAGCCTTTCTCAGTGTCCATGGCA-TTTT-------------------CGTGACTTCCCAACACTAGAATAAGTTTTTCTGCCAAAATGAGTGAGGTTCTTGGTGCCCTCTAGACTTT-C--C-CACCTCCCAACATGGGAGAATTGTG-AACTTTACATCAAACTGCCTCCCTGGCCCTCCCCA---TTCTCCTTTTGGTTATTTTGGGTCTGACACAGGCCCTTGAGATGTCATGTAAAGCCTCCAGTGGCTTTATCCTACCTAGATCCCTTCTAGCCCATTTTAGTTAGAC--TGTCATTGTGAATACACCAGTCATTTCATTTGAATTCTGTGAATCTCCACCTTGCCTATGTTTGGGTGGAACCTGGACAGTACTGTTGCCCACTTC-CAA-CCCTCTTCCCCTACAT-CCTGGTACTGGTTGTTTTCTGTGAAAACAGCAGTGAACAGGTTCCGTTTTGAACTGACCCTGAGGAAATGAGTCAGGAGCTATACTGGCAAGAGGGAGGGGATGAGAACTGTTGGAGAACTGAGAATGAGG-----tttt---------tttttttctttttaaca-tttttttttATATTAGTAATAAACGCAGTGG-AAACCAGCATTTTCTTTAATCCCTGTGTTCTAGTCATCTCTGGAGATGCAGATG--------AAGCTGTTCTTCTTACCTGG
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               667869 864 + 123392446 TAGCTGC-----TTGTTTTAAGTCCTTTTTATGTGATACCCTTTACCCTCAA---TGTCAGCTGCT-TGTGAAACTCA-CCAGATTGTCTGACCT-GGGGTCAAGTTTGGGTGACTGGTACAGAGTTACTCCCTAAAAGGCTACTCTCCCTGCTTTTGGATTCTGTAGTTTCTCTGTCAGTAGCATGGTCCCCACCACTATGG----TCTGTGATCACTGTGCTTTGTGAAGCTGTGCATATCCC--TTCGTAGCCTTTCTCAGTGTCTGTGGCA-TTTT-------------------CGTGACTTCCCAACACTAGAATAAGTTTTTCTGCCAAAATGAGTGAGGCTTTTGGTGCCCCCTAGACTTT-CC-C-TACCTCCCAATGTGGGAGGATTGTGAAACTTTCCACAAGACTG---CCCTGGTCCTCCCCATTCTCCTGGTGTCGGTTATTCTGGGTCTGACTCAGGCCTGTGAGGCGTCTGGTAGAGTCTCTGATGGCTTTACCCTACCTAGCTCCTCT-CAGTCCCTTTTAGTTAGAC--TGTCATTGTGAGGCCACCAGCCCTTTCATTTGAATTCTGTGAATCTCCACCTGGCCTGTCGTTGGGTGGAGCCTGGACAGTACTGTCGCCCTCTTC-CAA-CCCTCGT-CCCTACAGCCCTGGCGCTGGTTGTTTTCTGTGAAAACAGCAGTGAGCATGTTCAGTTTTGAGCTAGCCCTGAGGAAATGGGTCAGGAGTTGTGTGGGTAGGAGGGA-GGGGTGAGAGCTCTTGGAGAACTGAGAATGAG--------TT---------TTTTTTTCTTTTTAACA---TTTTTTTATATTAGTAATAAACGGAGTGA-AAACTAGCATTTTCTTTAATCTTTGTGTTCTAGTCGTCTCTGGAGGTGCGGATG--------AGGCTG---TTCTTACCTGG
i micMur3.chr6             C 0 I 94
s proCoq1.NW_012149775v1     698896 875 -   1411461 TAGCTGC-----TCGTTTCAAGTCCTTTTTATGTGACACCCCTTACCCTCAATGTTGTCAGCTGCT-CGTGAAACTCA-CCAGGTTGTCCGACCT-GGGGTCAAGTTTGGGTGACTGGTACAGAGTTACTCCCTCAGAGGCCACTCTCCCTGCTTTTGGAGTTTGTAGTTTCTCTGTCAGTAGCATGATCCCCACCACTATGG----TCTGTGATCACTGTGCTTTGTGAAACTGTGCATATCCC--TTTGTAGCCTTTCTCAGTGTCTGTGGCA-TTTT-------------------TGTGACTTCCCAACACTAGAATAAGTTTTTCTGCCAAAACGAGTGAGGCTCTTGGTGCCCTCTAGACTTT-CC-C-CGCCTCCCAACATGGGAGAATTGTGAAACTTTCCACAAGACTGCCTCCCTGGTCCTCCGCATTCTCCTGGTGTTGGTTATTCTGGGTCTGACTCAGGCCTGTGAGGCGTCTGGTAAAGCCTCTGGTGGCTTTACCCTACCTAGCTCCTCTCCAGTGCATTTTAGTTAGACTGTGTCATTATGAGGCCACCAGCCCTTTCATTTGAATTCTGTGAATCTCCACCTGGCCTGTCTTTGGGTGGAGCCTGGACAGTACTGTCGCCCTCTCC-CAA-CCCTCGT-CCCTACATCCCTGGCGCTGGTTGTTTTCTGTGAAAACGGCAGTGAGTGGGTTCGGTTTTGAGCTGGCCCTGAGGAAATGGGTCAGGAGTTGTGTGGGTAAGAGGGA-GGGGTGAGACCTCTTGGAGAACTGAGAATGAG------TTTT---------TTTTTTTCTTTTTAACA---TTTTTTTATATTAGTAATAAACGGAGTGG-AAACCAGCATTTTCTTTAATCCCTGTGTGCTAGTCATTTCTGGAGGTGTGGGTG--------AGGCTG---TTCTTACTTGA
i proCoq1.NW_012149775v1   I 19 C 0
s otoGar3.GL873550           717822 859 +  18854210 TGGCTGT-----TTGTTTTAAGTCCTTTTTATGTGAGACCTTCTACCCTCAGTGTTGTCAGATGCT-TGTGAAACTCA-CCAGGTT----GACCT--GGGTCAAGTTTGGGTGACTGGTACAGAGTTACTCCCTAAAAGGC-ACTCTTCCTGCTTTTGGCTTTCATAGTT--TCTGTCAGTAGCATAATCCCCACCACTATGG----TCTGTGACCACTGTGTTTTGTGAAATCCTGTATACCCC----CATAGGCTTTCTCAGTGTCCGTGGCATTTTT-------------------TGTGGCTTCCCAACACTAGAATAAGTTTTTCTGCCAAAATGAATGAGGCTTTTGGTGCCCTCTAGACTTC-CCAC-CACCTCCCAACATGGGAGAATTGTGAAACTGTCCGCAAGACTGCCTTCCTGCTCCTCCTCATGCTCCTGGTGTTGGTTATTCT-GGTCTGACACAGGCCTGTGGGATGTCTCGTAAAGCCTCTGTTGGCTTTACCCTACTTAGCTCCTCTCCGGTCCATTTCAGTTAGACTATGTCATTATGAGGCCACCAGACCTTTCATTGGAATTCTGTGAATCTCCACCTGGCCTATCTCTGGGTGGAACCTGGTCAGTACTATTGCCCTCTTTGAAA-CCCTCTTCCCCTACATCCCTGGCACTGGTTGTTTTCTGTGAAAACAACAGTGTACAGGTTCAGTTTTGAACTGGCCCTGTAGAAATGGGCCAGGAACTGTGTAGACAAGAGGGA-GAAATGAGAGCTATTGGAGAAATGAGAATGAG-------------------TTTTTTTCTTTTTAACAT--TTTTTTTATATTAGTAATAAACACAGTGGAAAAACAGCATTTTCTTTAA-CCCTGTGTTC-AGTCATCTCT-GAAGTGCAGGTG--------AGGCTG---TTCTTGA----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59013949 843 -  94987271 TAGCTGC-----TTGTTTTAAGTCC-TTTCACGTAAAA--------CCCCAGTGTTTGCAGCTGCC-AG-GAAGTGCA-CCAGGTTGTCTGGCCTTGAGGTCGAGTTTGAGTGACTGGTATAGACTTGCTCCTTGAACGGC--CTCTACCTGCTTTTGGACGTCCTAGTTT--CTGTCCGTAGCATGAACCCCACCGCTAAGG----CCTGTGGTCACTGTGCTTTGTGAAACTGTACG-CCCTT----TGTAGCCTTCCTCGGTGTCCGTGGCG-GTTTTTTTTTGTGTGTGTGTGTGTGTGACTTCCCAACACTAGAGTAAGTTTTTCTGCCAAATCAAGTGAGGCTCTTGGTGCCCTCTGGAGTTCAC--C-TACCTCCCAACATGGGAGGA-CGTG-AGACTTCT-TCAGACTGCCTCCCCATCGTGCCC---TCTCCTGGTGTCGGGCATTCTGGGTCTGACT--GGCCAGTG--GTGTCTTGGAAAGCCTCAGGCGGGCCT-CCCCAAACAGCTCCTGCCTGGCCCGTTTTAGTTCGGCTCTGTCATTGTGAGGCCACCGACCCTTTGGTTTGACTT-TGTGAAACTCCA-----CCTGTCTTTGGATGGAACCTGAACAGTGCTGTCATC----TC-TGA-CCCTCTTCCT-----TCCCCGGCACTGCGTGTTTTCTGTGAAAACAGCAGTGAACATGGTGGGTTTTGAACAGGCCCTACGGAAGTGGGTCAGGAGGTGTGCACACAAGA-----GGAGAGAGAGCTGTTGGAGAACTAAGAATGATT------------------TTTTTTTCTTTTTAACT---TTTTTTTATATTAGTAATAAACACAGTGG-AAACCGGTATCTTCTCTCATTTCTCTGTTGCAGTCCT---TGCAGGTGCAGGGGAGCCTCTCAGGCTG---TTG--------
i mm10.chr17               C 0 C 0
s canFam3.chr12              389001 859 +  72498081 TAGCTGC-----TTGTTTTAAGTCCTTTTTATGTGACAAACCCTACCCCCAAAGTTGCCAGTTGCTCTGTGAAACTCA-CCAGGTTG----ACCT-GGGGTCAAGTACGGATGACTGGTGCAGAGTTATTCCCTGAAAGGCCACTCTCCCTGCTTTTGGATTTTGTAGATCCTGCGTCAGTAGCATGGTCCCCACCAC--TCG----TCTGTGATCACTGTGCTTTGTGAAACTGTGCATCCCCTCGTACGTAGCCTTTCTCAGTGTCCGTGGCA-TCAT-------------------TGTGACTTCCCAACACTAGAGTAAGTTTTTCTGCCAAAATGAGTGAGGCTCTTGATGCCCTCTAGATTTT-C--CACACCTCCCAACATGGGAGAATTGTGAAACTTTCTGCAAGACTGCCTCCCTGGT-CTCCTTATTCTCCTGGTGTCGGTTTTTTTGGGTTTGACCCAAGCCCATGAGATGTCCTCTAAAGCCTCTTACGGGCT-ATCCTATC----TCCTCTCCAGCCCACTTTAGTTAGAGTACGTCATTGTGAGGCCACCAGCCCTTTCGTCTGAATTCTGTGAATCTCCACCTGGCCTACCCTTGGGTGGAACCTGGACGGTACTGTTGCCCTCGTC-TAA-CCTTCTT-CCCTACATCCCTGGCACTGGTTGTTTTCTGTGAAAACGGCAGTGAACAGGTTCGGTTTTGCACTGGCCCTGAGGAAATGGGTCAGGAGTTGTGTGGGCAAGAGGGA-AGGATGAGAGCCGTTGGAGAACTGAGAATGAAT------------------TTTTTTTCTTTTTAAC----ATTTTTTATATTAGTAATAAATGCAGTGG-AAACAAGCATTTTCCTCAATCCCTGTGTTCCAGTCATCTCTGGAGGTGCAGATG--------AGGCTG---TTCTTGGT---
i canFam3.chr12            C 0 C 0

a score=244028.000000
s hg38.chr6_GL000254v2_alt  1907821 26 +   4827813 TGGAGTCAG-------------------CTTATT-----CT-----------------------------------------TTA---GTTCAT
s panTro5.chr6             30753500 26 + 175400573 TGAAGTCAG-------------------CTCATT-----CT-----------------------------------------TTA---GTTCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31177120 26 + 173848474 TGAAGTCAG-------------------CTCATT-----CT-----------------------------------------TTA---GTTCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     684096 26 +   2037526 TGGAGTCAG-------------------CTCATT-----CT-----------------------------------------TTA---GTTCAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75352586 26 + 122973662 TGGAGTCAG-------------------CTTATT-----CT-----------------------------------------TTA---GTTCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31264273 26 + 172585720 TGGAGTCAG-------------------CTCATT-----CT-----------------------------------------TTA---GTTCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30553277 26 - 170955103 TGGAGTCAG-------------------CTCATT-----CT-----------------------------------------TTA---GTTCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     849560 26 +   1495729 TGGAGTCAG-------------------CTCATT-----CT-----------------------------------------TTA---GTTCAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      72687 26 -    811324 TGGAGTCAG-------------------CTCATT-----CT-----------------------------------------TTA---GTTCAT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30103234 26 -  71996105 TGGAGTCAG-------------------CTCATT-----CT-----------------------------------------TTA---GTTCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     110002 26 +    779361 TGGAGTCAG-------------------CTCATT-----CT-----------------------------------------TTA---GTTCAT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     773377 26 -   1829203 TGGAGTCAG-------------------CTCATT-----CT-----------------------------------------TTA---GTTCAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30938064 67 + 171630274 TGGAGTCAG-------------------CTCATT-----CTAGTTGAATGAGCTGACTAGAATGTTCATACATTCCCCATCAGTA---GTTCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           107268 86 -    750284 TGGAGTCAGCTCATTCAACTAGAATGAACTCATT-----CTAGTTGAATGAGCTGACTAGAATGTTCATACATTCCCCATCAGTA---GTTCAT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1355129 67 -   1771730 TGGAGTCAG-------------------CTCATT-----CTAGTTGAATGAGCTAACTAGAATGTTCATACATTCCCCATCAGCA---GTTCAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      53252 67 -    566255 TGGAGTCAG-------------------CTCATT-----CTAGTTGAATGAGCTAACTAGAATGTTCATACATTCCCCATCAGTA---GTTCAT
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     699771 31 -   1411461 CAGAGTCAG-------------------CTCGCTGAAGAGT-----------------------------------------GTG---GCTCAT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           718681 29 +  18854210 CAGAGTCAG-------------------CTCATT-----CT-----------------------------------------TCGTTTACTGAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59014792 27 -  94987271 GGGAGTCCA-------------------CTCATT-----CC----------------------------------------CTTA---GTTCAT
i mm10.chr17               C 0 I 1724
s canFam3.chr12              389860 26 +  72498081 TGGAGTCAC-------------------TTTATT-----CT-----------------------------------------TCC---ATTTGT
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668733 94 + 123392446 I

a score=694942.000000
s hg38.chr6_GL000254v2_alt  1907847  64 +   4827813 ACACACTAGTGATGGGGAATGACAAAGCTTAAGGTTCTTCCAGGCTGAAAAAAA---------------CCAATGGAG------------------------------------------------------G
s panTro5.chr6             30753526  64 + 175400573 ACACACTAGTGATGGGGAATGACAAAGCTTAAGGTTCTTCCAGGCTGAAAAAAA---------------CCAATGGAG------------------------------------------------------G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31177146  64 + 173848474 ACACACTAGTGATGGGGAATGACAAAGCTTAAGGTTCTTCCAGGCTGAAAAAAA---------------CCAATGGAG------------------------------------------------------G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     684122  64 +   2037526 ACACACTAGTGATGGGGAATGACAAAGCTTAAGGTTCTTCCAGGCTGAAAAAAA---------------CCAGTGGAG------------------------------------------------------G
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75352612  64 + 122973662 ACACACTAGTGATGGGGAATGACAAAGCTTAAGGTTCTTCCAGGCTGAAAAAAA---------------CCAGTGGAG------------------------------------------------------G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31264299  63 + 172585720 ACACACTAGTGATGGGGAATGACAAAGCTTAAGGTTCTTCCAGGCTG-AAAAAA---------------CCAATGGAG------------------------------------------------------G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30553303  63 - 170955103 ACACACTAGTGATGGGGAATGACAAAGCTTAAGGTTCTTCCAGGCTG-AAAAAA---------------CCAATGGAG------------------------------------------------------G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     849586  63 +   1495729 ACACACTAGTGATGGGGAATGACAAAGCTTAAGGTTCTTCCAGGCTG-AAAAAA---------------CCAATGGAG------------------------------------------------------G
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      72713  63 -    811324 ACACACTAGTGATGGGGAAAGACAAAGCTTAAGGTTCTTCCAGGCTG-AAAAAA---------------CCAATGGAG------------------------------------------------------G
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30103260  63 -  71996105 ACACACTAGTGATGGGGAATGACAAAGCTTAAGGTTCTTCCAGGCTG-AAAAAA---------------CCAATGGAG------------------------------------------------------G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     110028  63 +    779361 ACACACTAGTGATGGGGAAAGACAAAGCTTAAGGTTCTTCCAGGCTG-AAAAAA---------------CCAATGGAG------------------------------------------------------G
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     773403  63 -   1829203 ACACATTAGTGATGGGGAATGACAAAGCTTAAGGTTCTTCCAGGCTG-AAAAAA---------------CCCATGGAG------------------------------------------------------G
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30938131  63 + 171630274 ATACACTAGTGATGGGGAATGACACAATTTAAGGTTCTTTCAGGCTG-AAAGAA---------------CCAATGGGG------------------------------------------------------G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           107354  63 -    750284 ACACACTAGTGATGGGGAATAACAAAACCTAAGGTTCTTTCAGGCTG-AAAGAA---------------CCAATGGGG------------------------------------------------------G
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1355196  63 -   1771730 ATACACTAGTGATGGGGAATAATAAAACTTAAGGTTCTTTCAGGCTG-AAAGAA---------------CCAATGGAG------------------------------------------------------G
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      53319  63 -    566255 ATACACTAGTGATGGGGAATAACAAAACTTAAGGTTCTTTCAGGCTG-AAAGAA---------------CCAATGGGG------------------------------------------------------G
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     699802  62 -   1411461 GTGCAGTGGTGATAGGCAATGGCAAAGTGTAAGTCTCTTCCAGGCTG-AAAGAA---------------CCAATGGGA-------------------------------------------------------
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           718710 130 +  18854210 GTACAGTGATGGTGGG-AATGGCAAAGTAAAAGTCTCTTACAGGCAG-AAAAAATGAGATTCCATTAGCCCAAaggggtcctcaaactttttaaacagggggccagttcgctgtccctcagactgttggagg-
i otoGar3.GL873550         C 0 I 129
s canFam3.chr12              389886  48 +  72498081 ---------TCATAGGAA-----AAAGCTTACGTTTCTTTCAGTCTG-AAGGAA---------------CCAGTGAGG-------------------------------------------------------
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668733  94 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I

a score=19656.000000
s hg38.chr6_GL000254v2_alt  1907911 2 +   4827813 TT
s panTro5.chr6             30753590 2 + 175400573 TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31177210 2 + 173848474 TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     684186 2 +   2037526 TT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75352676 2 + 122973662 TT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31264362 2 + 172585720 TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30553366 2 - 170955103 TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     849649 2 +   1495729 TT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      72776 2 -    811324 TT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30103323 2 -  71996105 TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     110091 2 +    779361 TT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     773466 2 -   1829203 TT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30938194 2 + 171630274 TT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           107417 2 -    750284 TT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1355259 2 -   1771730 TT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      53382 2 -    566255 TA
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     699864 2 -   1411461 TC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           718969 1 +  18854210 -C
i otoGar3.GL873550         I 129 I 1
s canFam3.chr12              389934 2 +  72498081 TC
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668733 94 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I

a score=1202980.000000
s hg38.chr6_GL000254v2_alt  1907913 77 +   4827813 CCATTAGCCTGTAGGCATCAACCAGAACAAGCTGCCTTATGTTCAAGGGCAAAGTTTTGTAAGAAAAAGGAAAGGCC
s panTro5.chr6             30753592 77 + 175400573 CCATTAGCCTGTAGGCATCAACCAGAACAAGCTGCCTTATGTTCAAGGGCAAAGTTTTGTAAGAAAAAGGAAAGGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31177212 77 + 173848474 CCATTAGCCTGTAGGCATCAACCAGAACAAGCTGCCTTATGTTCAAGGGCAAAGTTTTGTAAGAAAAAGGAAAGGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     684188 77 +   2037526 CCATTAGCCTGTAGGCATCAACCAGAACAAGCTGCCTTATGTTCAAGGGCAAAGTTTTGTAAGAAAAAGGAAAGGCC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75352678 77 + 122973662 CCATTAGCCTGTAGGCATCAACCAGACCAAGTTGCCTTATGTTCAAGGGCAAAGTTTTGTAAGAAAAAGGAAAGGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31264364 77 + 172585720 CCATTGGCCTGTAGGCATCAACCAGACCAAGCTGCCTTATGTTCAAGGGCAAAGTTTTGTAAGAAAAAGGAAAGGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30553368 77 - 170955103 CCATTGGCCTGTAGGCATCAACCAGACCAAGCTGCCTTATGTTCAAGGGCAAAGTTTTGTAAGAAAAAGGAAAGGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     849651 77 +   1495729 CCATTGGCCTGTAGGCATCAACCAGACCAAGCTGCCTTATGTTCAAGGGCAAAGTTTTGTAAGAAAAAGGAAAGGCC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      72778 77 -    811324 CCATTGGCCTGTAGGCATCAACCAGACCAAGCTGCCTTATGTTCAAGGGCAAAGTTTTGTAAGAAAAAGGAAAGGCC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30103325 77 -  71996105 CCATTGGCCTGTAGGCATCAACCAGACCAAGCTGCCTTATGTTCAAGGGCAAAGTTTTGTAAGAAAAAGGAAAGGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     110093 77 +    779361 CCATTGGCCTGTAGGCATCAACCAGACCAAGCTGCCTTATGTTCAAGGGCAAAGTTTTGTAAGAAAAAGGAAAGGCC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     773468 77 -   1829203 CCATTGGCCTGTAGGCATCAACCAGACCAAGCTGCCTTATGTTCAAGGGCAAAGTTTTGTAAGAAAAAGGAAAGGCC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30938196 77 + 171630274 CCATTAGCCTGTAGGCTTCAATCAGACCAAGCTGCCTTATGTTCAAGGGCAAAGTTTTGTAGGAAAAAGGAAAGGCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           107419 77 -    750284 CCATTAGCCTGTAGGCATCAATCAGACCAAGCTGCTTTATGTTCAAGGGCAAAGTTTTGTAGGAAAAAGGAAAGGCC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1355261 77 -   1771730 CCGTTAGCCTGTAGGCATCAATCAGACCAAGCTGCCTTATGTTCAAGGGCAAAGTTTTGTAGGAAAAAGGAAAAGCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      53384 77 -    566255 CCATTAGCCTGTAGACATCAATCAGACCAAGCTGCCTTATGTTCAAGGGCAAAGTTTTGTAGGAAAAAGGAAAGGCC
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               668827 77 + 123392446 CCATTAGCCTAGAGGCATCAACCATACCAAACTGTGTCATGTTCAAGGACAAAGTTTTGTAGGGAAATGGAAAGGCC
i micMur3.chr6             I 94 I 3117
s proCoq1.NW_012149775v1     699866 76 -   1411461 CCATTAGCCTAGAGACATCAGCCACACCAAGCTGTGTTATGTCCAAGG-CAAAGTTTTGTAGGAAAAAGGAAAGGCC
i proCoq1.NW_012149775v1   C 0 I 2
s otoGar3.GL873550           718971 77 +  18854210 GCATTAGCCTATAGGCATCAACCACACCAAGCTATATTATGTTCAAGGGCAAAGTTTTGTAGGAAAAAGGAAAAGCC
i otoGar3.GL873550         I 1 I 253
s canFam3.chr12              389936 77 +  72498081 CCATTAATCTATAAGCATCAAATATACCAGGCTGCATTACATTCACAGGTAAGGTTTTATAGGAGAAAGGAAAGGCC
i canFam3.chr12            C 0 C 0
e mm10.chr17               59014819 1724 -  94987271 I

a score=673055.000000
s hg38.chr6_GL000254v2_alt  1907990 64 +   4827813 AGGTGTCCGTGGAGTTA-TTTTTAAATA-------TTTTAC-----TTTGCAGAG-TTTGTGTTTATGGAGTGGTAAT
s panTro5.chr6             30753669 64 + 175400573 AGGTGTCCGTGGAGTTA-TTTTTAAATA-------TTTTAC-----TTTGCAGAG-TTTGTGTTTATGGAGTGGTAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31177289 64 + 173848474 AGGTGTCCGTGGAGTTA-TTTTTAAATA-------TTTTAC-----TTTGCAGAG-TTTGTGTTTATGGAGTGGTAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     684265 71 +   2037526 AGGTGTCCGTGGAGTTA-TTTTTAAATATTTTACTTTTTAC-----TTTGCAGAG-TTTGTGTTTATGGAGTGGTAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75352755 64 + 122973662 AGGTGTCCGTGGAGTTA-TTTTTAAATA-------TTTTAC-----TTTGCAGAG-TTTGTGTTTATGGAGTGGTAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31264441 64 + 172585720 AGGTGTCTGTGGAGTTA-TTTTTAAATA-------TTTTAC-----TTGGCAGAG-TTTGTGTTTATGGAGTGGTAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30553445 64 - 170955103 AGGTGTCTGTGGAGTTA-TTTTTAAATA-------TTTTAC-----TTGGCAGAG-TTTGTGTTTATGGAGTGGTAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     849728 64 +   1495729 AGGTGTCTGTGGAGTTA-TTTTTAAATA-------TTTTAC-----TTGGCAGAG-TTTGTGTTTACGGAGTGGTAAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      72855 64 -    811324 AGGTGTCTGTGGAGTTA-TTTTTAAATA-------CTTTAC-----TTGGCAGAG-TTTGTGTTTATGGAGTGGTAAT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30103402 64 -  71996105 AGGTGTCTGTGGAGTTA-CTTTTAAATA-------TTTTAC-----TTGGCAGAG-TTTGTGTTTATGGAGTGGTAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     110170 64 +    779361 AGGTGTCTGTGGAGTTA-TTTTTAAGTA-------TTTTAC-----TTGGCAGAG-TTTGTGTTTATGGAGTGGTAAT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     773545 64 -   1829203 AGGAGTCCGCGGAGTTA-TTTTTAAATA-------TCTTAC-----TTGGCAGAG-TTTGTGTTTATGGAGTGGTAAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30938273 63 + 171630274 AGGTGTCCCTGGAGTTA-TTTTTAAACA-------TTTTGC-----TTTATGGAGTTTTGTGTTTATGAAGTGGTT--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           107496 62 -    750284 AAGTGTCCCTGGAGTTA-TTTTTAAACA-------TTTTAC-----TTTATGGAG-TTTGTGTTTATGAAGTGGTT--
i saiBol1.JH378327         C 0 I 319
s cebCap1.NW_016107755v1    1355338 62 -   1771730 AGGTGTCCCTGGAGTTA-TTTTTAAACA-------TTTTAG-----TTTATAGAG-TTTGTGTTTATGAAGTGGTT--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      53461 63 -    566255 AGGTGTCCCTGGAGTTATTTTTTAAACA-------TTTTAC-----TTTATGGAG-TTTGTGTTTATGAAGTGGTT--
i aotNan1.NW_018511496v1   C 0 I 3
s proCoq1.NW_012149775v1     699944 58 -   1411461 --GAGTGTCTGGAGTAG-TTTTTA-----------ATTTAC-----TTTGTAGGG-TTGGTGTTTAGGGAGCGGGGAT
i proCoq1.NW_012149775v1   I 2 C 0
s otoGar3.GL873550           719301 58 +  18854210 --gagtgctaggattaG-TTTTCA-----------GTTTCT-----TTTATAGGA-TTGGTGGTTCTGGAGTGATAAT
i otoGar3.GL873550         I 253 C 0
s canFam3.chr12              390013 69 +  72498081 AAGTATCTGTGGAGTAA-TCTTTTAATA-------TTTTATCTATGTTTATAGGT-TTGATGTTTATAGAGTTGTAAT
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I

a score=4020277.000000
s hg38.chr6_GL000254v2_alt  1908054 348 +   4827813 GATGAAGGAGTCTTTCAGCAGCAATTTGCAGAATGCCTGTGGGCCAGGCAATATACCAAGCACTAGAGATAACTGACAGCCAAAGCCAATGGATTTAAAATGTA-----CAGGGAAGACAGGTTTCTC--ATAATCACAAATAGCATGTAAAGTTAAACCTGTCAAAAGTGCTGGGAAGAAGACAGGGAAGAAAAGAGGGTGAAAGAGAGTTGTGTAATAAAGGGAGTCAGGGTAGGAGATGCAACTGAGACAAGCTCCAAAGGATAAACAGGAGG-TGGGGTGGGAGAGGGAAGTCAAGGCAAAGGTCTTCGCTAAAAGACCTAGGGGAAGAggagctaagaaacctagggacag
s panTro5.chr6             30753733 348 + 175400573 GATGAAGGAGTCTTTCAGCAGCAATTTGCAGAATGCCTGTGGGCCAGGCAATATACCAAGCACTAGAGATAACTGACAGCCAAAGCCAGTGGATTTAAAATGTA-----CAGGGAAGACAGGTTTCTC--ATAATCACAAATAGCATGTAAAGTTAAACCTGTCAAAAGTGCTGGGAAGAAGACAGGGAAGAAAAGAGGGTGAAAGAGAGTTGTGTAATAAAGGGAGTCAGGGTAGGAGATGCAACTGAGACAAGCTCCAAAGGATAAACAGGAGG-TGGGGTGGGAGAGGGAAGTCAAGGCAAAGGTCTTCGCTAAAAGACCTAGGGGAAGAggagctaagaaacctagggacag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31177353 348 + 173848474 GATGAAGGAGTCTTTCAGCAGCAATTTGCAGAATGCCTGTGGGCCAGGCAATATACCAAGCACTAGAGATAACTGACAGCCAAAGCCAATGGATTTAAAATGTA-----CAGGGAAGACAGGTTTCTC--ATAATCACAAATAGCATGTAAAGTTAAACCTGTCAAAAGTGCTGGGAAGAAGACAGGGAAGAAAAGAGGGTGAAAGAGAGTTGTGTAATAAAGGGAGTCAGGGTAGGAGATGCAACTGAGACAAGCTCCAAAGGATAAACAGGAGG-TGGGGTGGGAGAGGGAAGTCAAGGCAAAGGTCTTCGCTAAAAGACCTAGGGGAAGAggagctaagaaacctagggacag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     684336 348 +   2037526 GATGAAGGAGTCTTTCAGCAGCAATTTGCAGAATGCCTGTGGGCCAGGCAATATACCAAGCACTAGAGATAACTGACAGCCAAAGCCAATGGATTTAAAATGTA-----CAGGGAAGACAGGTTTCTC--CTAATCACAAATAGCATGTAAAGTTAAACCTGTCAAAAGTGCTGGGAAGAAGACAGGGAAGAAAAGAGGGTGAAAGAGAGTTGTGTAATAAAGGGAGTCAGGGTAGGAGATGCAACTGAGACAAGCTCCAAAGGATAAACAGGAGA-TGGGGTGGGAGAGGGAAGTCAAGGCAAAGGTCTTCGCTAAAAGACCTAGGGGAAGAggagctaagaaacctagggacag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75352819 348 + 122973662 GATGAAGGAGTCTTTCAGCAGCAATTTGCAGAGTGCCTATGGGCCAGGCAATACACCAAGCACTAGAGATAACTGACAGCCAAAGCCAATGGATTTAAAATGTA-----CAGGGAAGACAGGTTTCTC--ATAATCACAAATAGCATGTAAAGTTAAACCTGTCAAAAGTGCTGGGAAGAAGACAGGGAAGAAGAGAGGGTGAAAGGGAGTTGTGTAATAAAGGGAGTCTGGGAAGGAGATGCAACTGAGACAAGCTCCAAAGGATAAACAGGGGG-TGGGGTGGGAGAGGGAAGTCAAGGCAAAGGTCTTCGCTAAAAGACCTAGGGGAAGAGGTGCTAAGAAACCTAgggacag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31264505 336 + 172585720 GATGAAGGAGtctttcagcagcaatttgcagagtgcctgtgggccaggcagtatactaagcactagagataACTGACAGCCAAAGCCAATGGATTTAAAATGTA-----CAAGGAAGACAGGTTTCCC--ATAACCACAAATAGCATGTAAAGTTAAACCTGCCAGAAGTGCTGGGAAGAAGAC------------AGGGTGAAACGGAGTTGTGTAATAAAGGGAGTCGGGGAAGGAGATGCAACTGAGACAAGCTCCGAAGGATAAACAGGAGG-TGGGGTGGGAAAGGGGAGTCAAGGCAAAGGTCTTAGCTAAAAGACCTAGGGGAAAAGGAGCTAAGAAACCTAgggacag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30553509 336 - 170955103 GATGAAGGAGtctttcagcagcaatttgcagagtgcctgtgggccaggcagtatactaagcactagagataACTGACAGCCAAAGCCAATGGATTTAAAATGTA-----CAAGGAAGACAGGTTTCTC--ATAACCACAAATAGCATGTAAAGTTAAACCTGCCAGAAGTGCTGGGAAGAAGAC------------AGGGTGAAACGGAGTTGTGTAATAAAGGGAGTCGGGGAAGGAGATGCAACTGAGACAAGCTCCGAAGGATAAACAGGAGG-TGGGGTGGGAAAGGGGAGTCAAGGCAAAGGTCTTAGCTAAAAGACCTAGGGGAAAAGGAGCTAAGAAACCTAgggacag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     849792 336 +   1495729 GATGAAGGAGtctttcagcagcaatttgcagagtgtctgtgggccaggcagtatactaagcactagagataACTGACAGCCAAAGCCAATGGATTTAAAATGTA-----CAAGGAAGACAGGTTTCTC--ATAACCACAAATAGCATGTAAAGTTAAACCTGCCAAAAGTGCTGGGAAGAAGAC------------AGGGTGAAACGGAGTTGTGTAATAAAGGGAGTCGGGGAAGGAGATGCAACTGAGACAAGCTCCGAAGGATAAACAGGAGG-TGGGGTGGGAAAGGGGAGTCAAGGCAAAGGTCTTAGCTAAAAGACCTAGGGGAAAAggagctaagaaacctagggacag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      72919 336 -    811324 GATGAAGGAGtctttcagcagcaatttgcagagtgcctgtgggccaggcaatatactaagcactagagataACTGACAGCCAAAGCCAATGGATTTAAAATGTA-----CAAGGAAGACAGGTTTCTC--ATAACCACAAATAGCATGTAAAGTTAAACCTGCCAAAAGTACTGGGAAGAAGAC------------AGAGTGAAACGGAGTTGTGTAATAAAGGGAGTCAGGGAAGGAGATGCAACTGAGACAAGCTCCAAAGGATAAACAGGAGG-TGGGGTGGGAAAGGGGAGTCAAGGCAAAGGTCTTAGCTAAAAGACCTAGGGGAAAAggagctaagaaacctagggacag
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30103466 336 -  71996105 GATGAAGGAGtctttcagcagcaatttgcagagtgcctgtgggccaggcaatatactaagcactagagataACTGACAGCCAAAGCCAATGGATTTAAAATGTA-----CAAGGAAGACAGGTTTCTC--ATAACCACAAATAGCATGTAAAGTTAAACCTGCCAAAAGTGCTGGGAAGAAGAC------------AGGGTGAAACGGAGTTGTGTAATAAAGGGAGTCGGGGAAGGAGATGCAACTGAGACAAGCTCCAAAGGATAAACAGGAGG-TGGGGTGGGAAAGGGGAGTCAAGGCAAAGGTCTTAGCTAAAAGACCTAGGGGAAAAGGAGCTAAGAAACCTAgggacag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     110234 336 +    779361 GATGAAGGAGtctttcagcagcaatttgcagagtgcctgtgggccaggcaatatactaagcactagagataACTGACAGCCAAAGCCAATGGATTTAAAATGTA-----CAAGGAAGACAGGTTTCTC--ATAACCACAAATAGCATGTAAAGTTAAACCTGCCAAAAGTACTGGGAAGAAGAC------------AGGGTGAAACGGAGTTGTGTAATAAAGGGAGTCGGGGAAGGAGATGCAACTGAGACAAGCTCCGAAGGATAAACAGGAGG-TGGGGTGGGAAAGGGGAGTCAAGGCAAAGGTCTTAGCTAAAAGACCTAGGGGAAAAGGAGCTAAGAAACCTAgggacag
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     773609 345 -   1829203 GAT---AGAGtctttcagcagcaatttgcagagtgcctatgggccaggcaatatactaagcactagagataACTGACAGCCAAAGCCAGTGGATTTAAAATGTA-----CAAGGAAGACAGGTTTCTC--ATAACCACAAATAGCATGTAAAGTTAAACCTGCCAAAAGTGCTGGGAAGAAGACAGGGAAGAAGAAAGGGTGAAAGGGAGTTGTGTAATAAAGGGAGTCGGGGAAGGAGATGCAATTGAGACAAGCTCCGAAGGATAAACAGGAGG-TGGGGTGGGAAAGGGAAGTCAAGGCAAAGGTCTTAGCTAAAAGACCTAGGGGAAAAggagctaagaaacctagggacag
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30938336 308 + 171630274 AATGATGGAGtctttcagcaacaatttgcagagtgtctgtgggccaagcaatatactaagcactagagataACTGACAGCCAAAGCCAATTTATTTAAAATGTA-----CAGGGAAGACCAGTTTATCAAATAATCACAAATAGCATGTGAAGTTAAACCTGTCAAAAGTGGTgggaagaagac------------agggtgaaagggaagtgtgtaataaagggagtcagggaaggggatgcagctgagacatgctccaaaggaaaaacagg-------------------------------aggttttcgctaaaagaccaaggggaagaggagctaagaaacctagggacag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           107877 336 -    750284 GATGAAGGAGTCTTTAAGCAACAATTTGC--AGTGTCTGTGGGCCAGGCAATATACTAAGCACTACAGATAACTGACAGCCAAATCCAATTTATTTAAAATGTA-----CAGGGAAGACCAGTTTATCAAATAATCACAAATAGCATGTGAAGTTAAACCTGTCAAAAGTGGTGGGAAGAAGAC------------AGGGTGAAAGGGAAGTGTATGATAAAGGGAGTCAGGGAAGGAGATACAGCTGAGACATGCTCCGAAGGATAAACAGGAGG-TGGGGTGGGAGAGGGGAGTCAAAGCAAAGGTCTTCGCTAAAAGACCAAGGGGAAGAggagctaagaaaactagggacag
i saiBol1.JH378327         I 319 C 0
s cebCap1.NW_016107755v1    1355400 332 -   1771730 AATGATGGAGtctttcagcaacaatttgcagagtgtctgtgggccaggcaatattctaagcactagag----ctgacagcCAAAGCCAATTTATTTAAAATGTA-----CAGGGAAG--CAGTTTATCAAATAATCACAAATAGCATGTGAAGTTAAACCTGTCAAAAGTGGTGGGAAGAAGAC------------AGGGTGAAAGGAAAGTGTGTAATAAAGGGAGTCATGGAAGGAGATGCAGCTGAGACATGCTCTGAAGGATAAACAGGAGG-TGGGGTGGGAGAGGGGAGTCAAGGCAAAGGTCTTTGCTAAAAGACCAAGGGGAAGAggagctaagaaacctagggacag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      53527 312 -    566255 GATGAAGGAGtctttcagcaacaatttgcagagtgtctgtgggccaggcaatatactaagcactagagataACTGACAGCCAAAGCCAATTTATTTAAAATGTA-----CAGGGAAGACCAGTTTATCAAATAATCACAAATAGCATGTGAAGTTAAACCTGTCAAAAGTGGTGGGAAGAAGAC------------AGGGTGAAAG-------------------------GGAAGGAGATGGAGCTGAGACATGCTCCGAAGGATAAACAGGAGG-TGGGGTGGGAG-GGGGAGTCAAGGCAAAGGTCTTCGCTAAAAGACCAAGGGGAAGAggagctaagaaacctagggacag
i aotNan1.NW_018511496v1   I 3 C 0
s proCoq1.NW_012149775v1     700002 346 -   1411461 GATGAAGcagtctttcaacaaatacctgtggagtgcctacgggccaggcaatatactaagcactagaggtaactgagagccaaaaccaatgaattgaaagaaaaaaatctggggaagacaggttcatcaaataatcactaataagctgtaaagttacacctgtcaaaagtgctgggcagaagagagac--------gtggtgaaagggaaatttgcagtaaagggagtcagggGAGGAGATGCATCTGAGACAAGCTCTGAAGGATAGACAGGAGG-TGGGGTGGGAGAGAGTAATCGAGGCCAAGGTTTTT-CTAAAAGACCTAGGGGAAAATgagctaagaaaactagggagag
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           719359 328 +  18854210 GGTGAAGTGGTCTCtcaacaaatacttgtagagtg-ctgtgggtgaggcaatacactaagctctagggataac--aaagccaaaaccaatgaattgaaaaatcag----cgagaaagacagattcattaaataatcacaaataa--cgtaaaattatgtctgtcaaaagtgctgggaagaacagaggc--------atggcgaaagaa-----tgtaataaagggagtc--ggaaggataCACAATTGAGACAAGCTCTGAAAGATAAAC---ACA-TGCGATGGGAGAGAGTAGTCAAGACAAAGGTTTTTGCTAAAAGACCTAGGGGAAGATAAGCTACAAAaactagggagag
i otoGar3.GL873550         C 0 I 176
s canFam3.chr12              390082 290 +  72498081 GACAAAACAGTCTTTGAAGAAATAGTTGTAGA----CTGTGGGCCTGACAATATACTAGGCACTAGAAAGAAC--AGAGCCAAAGCCAGTGAATTTAAA-TCCA-----TAGGAGAGACACGGTTATCAAAAAATCATGAATA-TGCATAAGGCCACACCTGTCAAAAGTG---------AGAC------------ATAATGAAAAGGGAGTATGTAATAAAGGGAGACTGGGAAGGTGACA----TGAGACAAGCTCTGAAGGACaagcaggaggcctgagtaggagagcaaaagccaagcaaaggtgtttgctaag------atgggaaaag----------------------
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I

a score=1201600.000000
s hg38.chr6_GL000254v2_alt  1908402 107 +   4827813 tgggagatgatgcagaagaaagaggagttagaccactcagggccttggaaaacatgaagatttggctcttttcttagaacagaagcctttgaagaattttagac--ag--g
s panTro5.chr6             30754081 107 + 175400573 tgggagatgatgcagaagaaagaggagttagaccactcagggccttggaaaacatgaagatttggctcttttcttagaacagaagcctttgaagaattttagac--gg--g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31177701 107 + 173848474 tgggagatgatgcagaagaaagaggagttagaccactcagggccttggaaaacatgaagatttggctcttttcttagaacagaagcctttgaagaattttagac--gg--g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     684684 109 +   2037526 tgggagatgatgcagaagaaagagaagttagaccactcagggccttggaaaacatgaagatttggctcttttcttagaacagaagcctttgaagaattttagacaggg--g
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75353167 107 + 122973662 tgggagatgatgcagaagaaagaggagttagaccactcagggccttggaaaacatgaagatttggctcttttcttagaacagaagcctttgaagaattttagac--gg--g
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31264841 107 + 172585720 tgggagatgatgcagaagaaagaggagttagaccactcagggccttggagaacatgaggatttggctcttttcttagaacagaagcctttgaagaattttagac--gg--g
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30553845 107 - 170955103 tgggagatgatgcagaagaaagaggagttagaccactcagggccttggagaacatgaggatttggctcttttcttagaacagaagcctttgaagaattttagac--gg--g
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     850128 107 +   1495729 tgggagatgatgcagaagaaagaggagttagaccactcagggccttggagaacatgaggatttggctcttttcttagaacagaagcctttgaagaattttagac--gg--g
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      73255 107 -    811324 tgggagatgatgcagaagaaagaggagttagaccacttagggccttggagaacatgaggatttggctcttttcttagaacagaagcctttgaagaattttagac--gg--g
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30103802 107 -  71996105 tgggagatgatgcagaagaaagaggagttagaccactcagggccttggagaacatgaggatttggctcttttcttagaacagaagcctttgaagaattttagac--gg--g
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     110570 107 +    779361 tgggagatgatgcagaagaaagaggagttagaccactcagggccttggagaacatgaggatttggctcttttcttagaacagaagcctttgaagaatttcagac--gg--g
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     773954 107 -   1829203 tgggagatgatgcagaagaaagaggagttagaccactcagggccttggagaacatcaggatttggctcttttcttagaacagaagcctttgaagaattttagat--gg--g
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30938644 104 + 171630274 tgggaggtgacacagaagac-----ctccagaccactcagggccttggagaacatgaaaatgtggctcttttcttagaattgaaggctttggagaattctagac--aggtg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           108213 109 -    750284 tgggaggtgacacagaagaaagaggagtcagaccactcagggccttggagaaaatgaaaatgtggctcttttcttagaataggagcctttgaagaattctagac--aggtg
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1355732 109 -   1771730 tgggtggtgacacagaagaaagaggagtcagaccacttagggccttggagaacatgaaaatgtggctcttttctaagaatagaagtctttgaggaattctagac--aggtg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      53839 108 -    566255 tgggaggtgacacagaagaaagaggagtcagaccactcagggccttggagaacatgaaaatgtgactcttttcttagaatagaagcttttgaagaatt-tagac--aggtg
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     700348 100 -   1411461 tagaagac-------aagggtgaagagctagactacttggggccttgtagaacacaaggacttggctcttttcttaaaacagaagcctttgaagagttttaggc--ag--g
i proCoq1.NW_012149775v1   C 0 I 3164
s canFam3.chr12              390372 106 +  72498081 tagaacatgaggcagaagaaagaggagctagaccactcatggccttgtagaa-ataaagacttgggtctcttttattaccaaagacc--tgaagggtcttaggc--cattg
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e otoGar3.GL873550           719687 176 +  18854210 I

a score=578352.000000
s hg38.chr6_GL000254v2_alt  1908509 58 +   4827813 agtatcatggcttagg-ctggcttttc--aaaaaaaatcag--cttgtatggagagggcccac
s panTro5.chr6             30754188 60 + 175400573 agtatcatggcttagg-ctggcttttcaaaaaaaaaatcag--cttgtatggagggggcccac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31177808 59 + 173848474 agtatcatggcttagg-ctggcttttc-aaaaaaaaatcag--cttgtatggagggggcccac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     684793 60 +   2037526 agtatcatggcttagg-ctggcttttttaaaaaaaaaccag--cttgtatggaaagggcccac
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75353274 59 + 122973662 agtatcatggcttagg-ctggcgtttc-aaaaaaaaatcag--cttgtatggagagggcccac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31264948 57 + 172585720 agtatcatggcttagg-ctggcttttc---aaaaaaatcag--cttgtatgaagagggcccac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30553952 57 - 170955103 agtatcatggcttagg-ctggcttttc---aaaaaaatcag--cttgtatgaagagggcccac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     850235 57 +   1495729 agtatcatggcttagg-ctggcttttc---aaaaaaatcag--cttgtatgaagagggcccac
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      73362 57 -    811324 agtatcatggcttagg-ctggcttttc---aaaaaaatcag--cttgtatgaagagggcccac
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30103909 57 -  71996105 agtatcatggcttagg-ctggcttttc---aaaaaaatcag--cttatataaagagggcccac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     110677 57 +    779361 agtatcatggcttagg-ctggcttttc---aaaaaaatcag--cttgtatgaagagggcccac
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     774061 57 -   1829203 agtatcatggcttagg-ctggcttttc---aaaaaaatcag--cttgtatgaagagggcccac
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30938748 57 + 171630274 agtatcatggcttagg-ttggcttttc---aaaaaaatcag--cttgtatggaaagggccagc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           108322 57 -    750284 agtatcatggcttagg-ttggcttttc---aaaaaaatcag--cttgtatggagatggccaac
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1355841 57 -   1771730 agtatcatggcttagc-ttggcttttc---aaaaaaatcaa--cttgtacagagagggccaac
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      53947 57 -    566255 agtatcatggcttagg-ttggcttttc---aaaaaaatcag--cttgtatggagagggccaac
i aotNan1.NW_018511496v1   C 0 C 0
s canFam3.chr12              390478 57 +  72498081 actatcatggattagattttgtttttc---aagaagatggattctaatttggagctggcc---
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e otoGar3.GL873550           719687 176 +  18854210 I

a score=1886407.000000
s hg38.chr6_GL000254v2_alt  1908567 188 +   4827813 cttggacctggaagttaattagaaggctactggctacttcagtagtacaagtgagccatgatggtgacatagacttgggtagtagagttggagaaaagtagACATTTGAAAATTACAGGTCAAAATAAAAGTA--TCAGATTTCTCCAGGT--------------AGTTCTGGCTTATGTAACTGCCATTTAAAAAG------------AAG----------------------------TCTT
s panTro5.chr6             30754248 188 + 175400573 cttggacctggaagttagttagaaggctactggctacttcagtagtacaagtgagccatgatggtgacatagacttgggtagtagagttggagaaaagtagACATTTGAAAATTACAGGACAAAATAAAAGTA--TCAGATTTCTCCAGGT--------------AGTTCTGGCTTATGTAACTGCCATTTAAAAAG------------AAG----------------------------TCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31177867 188 + 173848474 cttggacctggaagttagttagaaggctactggctacttcagtagtacaagtgagccatgatggtgacatagacttgggtagtagagttggagaaaagtagACATTTGAAAATTACAGGTCAAAATAAAAGTA--TCAGATTTCTCCAGGT--------------AGTTCTGGCTTATGTAACTGCCATTTAAAAAG------------AAG----------------------------TCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     684853 188 +   2037526 cttggacctggaagttagttagaaggctactggctacttcagtagtacaagtgagccatgatggtgacatagacttgggtagtagagttggagaaaagtagACATTTGAAAATTATAGGTCAAAATAAAAGTA--TCAGATTTCTCCAGGT--------------AGTTCTGGCTTATGTAACTGCCATTTAAAAAG------------AAG----------------------------TCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75353333 186 + 122973662 cttggacctggaagttagttagaaggctactggctacttcagtagtacaagtgagccacgatggtgac--agacttgggtagtacagttggagaaaagtagACATTTGAAAATTACAGGTCAAAATAAAAGTA--TCAGATTTCTCCAGGT--------------AGTTCTGGCTTATGTAACTGCCATTTAAAAAG------------AAG----------------------------TCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31265005 187 + 172585720 cttggacct-gaagttagttagaaagctactggctacttcagtagtacaagtgagccatgatgatgacatagacttgggtaggagagttggagaaaagtagACATTTGAAAATTACAGGTCAAAACAAAAGTA--TCAGATTTCTCCAGGT--------------AGTTCTGGCTTATGTAACTGCCATTTAAAAAG------------AAG----------------------------TCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30554009 187 - 170955103 cttggacct-gaagttagttagaaagctactggctacttcagtagtacaagtgagccatgatgatgacatagacttgggtaggagagttggagaaaagtagACATTTGAAAATTACAGGTCAAAACAAAAGTA--TCAGATTTCTTCAGGT--------------AGTTCTGGCTTATGTAACTGCCATTTAAAAAG------------AAG----------------------------TCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     850292 187 +   1495729 cttggacct-gaagttagttagaaagctactggctacttcagtagtacaagtgagccatgatgatgacatagacttgggtaggagagttggagaaaagtagACATTTGAAAATTACAGGTCAAAACAAAAGTA--TCAGATTTCTCCAGGT--------------AGTTCTGGCTTATGTAACTGCCATTTAAAAAG------------AAG----------------------------TCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      73419 188 -    811324 cttggacctggaagttagttagaaagctactggctatttcagtagtacaagtgagccatgatgatgacatagacttgggtagtagagttggagaaaagtagACATTTGAAAATTACAGGTCAAAACAAAAGTA--TCAGATTTCTCCAGGT--------------AGTTCTGGCTTATGTAACTGCCATTTAAAAAG------------AAG----------------------------TCTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30103966 188 -  71996105 cttggacctggaagttagttagaaagctactggctacttcagtagtacaagtgagccatgatgatgacatagacttgggtagtagagttggagaaaagtagACATTTGAAAATTACAGGTCAAAACAAAAGTA--TCAGATTTCTGCAGGT--------------AGTTCTGGCTTATGTAACTGCCATTTAAAAAG------------AAG----------------------------TCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     110734 188 +    779361 cttggacctggaagttagttagaaagctactggctatttcagtagtacaagtgagccatgatgatgacatagacttgggtagtagagttggagaaaagtagACATTTGAAAATTACAGGTCAAAACAAAAGTA--TCAGATTTCTCCAGGT--------------AGTTCTGGCTTATGTAACTGCCATTTAAAAAG------------AAG----------------------------TCTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     774118 188 -   1829203 cttggacctggaagttagttagaaagctactggctacttcagtagtacaagtgagccatgatgatgacatagacttgggtagtagagttggagaaaagtagACATTTGAAAATTACAGGTCAAAACAAAAGTA--TCAGATTTCTCCAGGT--------------AGTTCTGGCTTATGTAACTGCCATTTAAAAAG------------AAG----------------------------TCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30938805 171 + 171630274 cttggacctggaagttagttagaa-gctactggctacttcagtagtacaa----------gtgatgaaacagacttgggtagcagaggtggaaaaaagtgggcatttgaaaattactggtcaaaac-aaagta--tcagatttcaccacat--------------agttctggcttatgtagctgccatttaaaaag------------aa---------------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           108379 181 -    750284 cttggacctggaagttagttagaa-gctactggctacttcagtagtacaattgagccatggtgatgaaacagacttgggtagtagaggtggagaaaagtgggcatttgaaaattacaggtcaaaac-aaagta--tcagatttctccaggt--------------agttctggcttatgtaactgacatttaaaaag------------ga---------------------------------
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1355898 181 -   1771730 cttggacccagaagttagttagaa-gctactggctacttcagtagtacaactgagccatggtgatgaaacagacttgggtagtagaggtggagaaaagtggGCATTTGAAAATTACAGGTCAAAAC-AAAGTA--TCAGATTTCTCCAGGT--------------AGTTCTGGCTTATGTAACTGCCATTTAAAAAG------------AA---------------------------------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      54004 181 -    566255 cttggacctggaagttagttagaa-gctactggctacttcagtagtacaagtgagccatggtgatgaaacagacttgggtagtagaggtggagaaacgtggGCATTTGAAAATTACAGGTCAAAAC-AAAGTA--TCAGATTTCTCCAGGT--------------AGTTCTGGCTTATGTAACTGCCATTTAAAAAG------------AA---------------------------------
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           719863 205 +  18854210 cttgaccccaggagttgg--aggttgctgtgagctgtgatgccacggcactctacccagggggat------agcttgaggctctgtctcaaaaaaaagaaaactagggagagttgaagg-caaagttgaagag--ctagaccacttggggccttgtagaacacaaagacttggctcttaaaacaagcctttgaaaaattttaggcaggtgag----------------------------tatc
i otoGar3.GL873550         I 176 I 4
s canFam3.chr12              390535 198 +  72498081 ---aggcatggaagtgccttgcaa-------ggtatcttcagtagtccaggtgagttatgatggt---atagccgtgggtagtggaatgggagaaaagtagac--ctgaaaa-----gatcaaaatgaaaatattttaggtTTCTCAGGGT--------------AATACTGGCCCGCATAACTACCATTTAAAAAG------------AAATAGGAAACAGACAATGCTATGAATTTGTTCTT
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I

a score=100769.000000
s hg38.chr6_GL000254v2_alt  1908755 55 +   4827813 -AAGATAGAAGTTT----------------ATg---------------------gctgggcgc---ggtggctca-----cgcc----------tgtaatcccagcacttt
s panTro5.chr6             30754436 55 + 175400573 -AAGATAGAAGTTT----------------ATg---------------------gctgggcgc---ggtggctca-----cgcc----------tgtaatcccagcacttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178055 55 + 173848474 -AAGATAGAAGTTT----------------ATg---------------------gctgggcgc---ggtggctca-----cgcc----------tgtaatcccagcacttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685041 55 +   2037526 -AAGATAGAAGTTT----------------ATg---------------------gctgggcgc---ggtggctca-----tgcc----------tgtaatcccagcacttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75353519 55 + 122973662 -AAGATAGAAGTTT----------------ATg---------------------gccgggtgt---ggtgtctca-----tgcc----------tgtaatcccagcacttt
i nomLeu3.chr1a            C 0 I 640
s calJac3.chr4             30938976 48 + 171630274 --------aagtat----------------tgg---------------------gccaggagc---ggtggctca-----caat----------tgtaatcccagcacttt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           108560 40 -    750284 --------aagtat----------------tgg---------------------gccagaagc---agtggctca-----tgg------------------ccagcacttt
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1356079 48 -   1771730 --------ATGTAT----------------TGg---------------------gccaggagc---agtggctca-----cgcc----------tgtaatcccagcacttt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      54185 48 -    566255 --------AAGTAT----------------TGg---------------------gccaggagc---ggtgcctct-----cacc----------tgtaatcccaacacttt
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           720072 71 +  18854210 -aatagatgggttttacaaaaagacccaactta---------------------gttgggggt---ggtagttcg-----tgcc----------tgtaatcctatcactct
i otoGar3.GL873550         I 4 C 0
s canFam3.chr12              390733 95 +  72498081 GTAATAATGAGTCT----------------GAGCTGCCTTTTAAGACCTCAGAAGAgggacgcctgggtggctgagcatctgcctttgactcggtgtgatcccagcatcct
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e colAng1.NW_012115577v1     774306  0 -   1829203 C
e manLeu1.NW_012106264v1     110922  0 +    779361 C
e chlSab2.chr17            30104154  0 -  71996105 C
e cerAty1.NW_012002513v1      73607  0 -    811324 C
e macNem1.NW_012012100v1     850479  0 +   1495729 C
e macFas5.chr4             30554196  0 - 170955103 C
e rheMac8.chr4             31265192  0 + 172585720 C

a score=8880.000000
s hg38.chr6_GL000254v2_alt  1908810 4 +   4827813 ggga
s panTro5.chr6             30754491 4 + 175400573 ggga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178110 4 + 173848474 ggga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685096 4 +   2037526 ggga
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30939024 4 + 171630274 gaaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           108600 4 -    750284 gaaa
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1356127 4 -   1771730 gaaa
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      54233 4 -    566255 gata
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           720143 4 +  18854210 agga
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              390828 4 +  72498081 ggga
i canFam3.chr12            C 0 I 285
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e colAng1.NW_012115577v1     774306 0 -   1829203 C
e manLeu1.NW_012106264v1     110922 0 +    779361 C
e chlSab2.chr17            30104154 0 -  71996105 C
e cerAty1.NW_012002513v1      73607 0 -    811324 C
e macNem1.NW_012012100v1     850479 0 +   1495729 C
e macFas5.chr4             30554196 0 - 170955103 C
e rheMac8.chr4             31265192 0 + 172585720 C
e nomLeu3.chr1a            75353574 640 + 122973662 I

a score=268165.000000
s hg38.chr6_GL000254v2_alt  1908814 120 +   4827813 ggccaaggtgggtggatcac--gaggtcaggagatcaagaccatcctggctaacatggtgaaacccc----atctctactaaaaatag-aaaaaaaattagccaggcgtggtggccggcgtctgtag
s panTro5.chr6             30754495 121 + 175400573 ggccaaggtgggtggatcac--gaggtcaggagatcaagaccatcctggctaacatggtgaaacccc----atctctactaaaaatagaaaaaaaaattagccaggtgtggtggccggcgtcggtag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178114 120 + 173848474 ggccaaggtgggtggatcac--gaggtcaggagatcaagaccatcctggctaacatggtgaaacccc----atctctactaaaaatag-aaaaaaaattagccaggcgtggtggccggcgtcggtag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685100 121 +   2037526 ggccaaggtgggtggatcac--gaggtcaggagatcaagaccatcctggctaacatggtgaaacccc----atctctactaaaaatagaaaaaaaaattagccaggcgtggtggccggcgtctgtag
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30939028 117 + 171630274 ggccaaggcgggcaggtcac--gagatcaggtgttcaaga----cctgatcaacagggtgaaacccctcaggtctctattaaaaatac----aaaaattagccaggcatggtggcgcatacctgtaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           108604 121 -    750284 ggccaaggcgggcaggtcac--aagatcaggtgttcaagaccagcctgaccaacatggtgaaacccctcaggtctctactagaaatac----aaaaattagccaggcatggtggcacatacctgtag
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1356131 121 -   1771730 ggccaaggcgggcaggttac--gagatcaggtgttcaagaccagcctgaccaacatggtgaaacccctcaggtctctactaaaaatac----aaaaattagccaggcatggtggcacatacctgtca
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      54237 121 -    566255 ggccaaggcggacaggtcac--gagatcaggtgttcaagaccagcctgaccaacatggtgaaacccctcaggtctctactaaaaatac----aaaaattagccaggcatggtggcacatacctgtaa
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           720147 117 +  18854210 agctgaggtggaaggatcactggtgctcaggagttcaagaccagcctaagcaaga--gcaggaccct----gtctgtactaaaaatag----aaaaattagctgggcattatagtagatacctgtag
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              390832 285 +  72498081 I
e colAng1.NW_012115577v1     774306   0 -   1829203 C
e manLeu1.NW_012106264v1     110922   0 +    779361 C
e chlSab2.chr17            30104154   0 -  71996105 C
e cerAty1.NW_012002513v1      73607   0 -    811324 C
e macNem1.NW_012012100v1     850479   0 +   1495729 C
e macFas5.chr4             30554196   0 - 170955103 C
e rheMac8.chr4             31265192   0 + 172585720 C
e nomLeu3.chr1a            75353574 640 + 122973662 I

a score=234193.000000
s hg38.chr6_GL000254v2_alt  1908934  92 +   4827813 tcccagctact--cgggaggctgacgcaggagaatggcgtgaacc-ca-------ggaggcggagctt----gcagtgagc------cgagatcgcaccactgcactccagc
s panTro5.chr6             30754616  92 + 175400573 tcccagctact--cgggaggctgaggcaggagaatggcgtgaacc-ca-------ggaggcggagctt----gcagtgagc------cgagatcgcaccactgcactccagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178234  92 + 173848474 tcccagctact--cgggaggctgaggcaggagaatggcgtgaacc-ca-------ggaggcggagctt----gcagtgagc------cgagatcgcaccactgcactccagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685221  92 +   2037526 tcccagctact--cgggaggctgaggcaggagaatggcatgaacc-ca-------ggaggcggagctt----gcagtgagc------tgagatcgcaccactgcactccagc
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30939145  91 + 171630274 tcacagctact--tgggaggctgaggcaggagaac-gcttgaacc-ca-------ggtggcagaagtt----gcagtgaac------tacgatctcaccactgcactccagc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           108725  92 -    750284 tcacagctact--tgggaggctgaggcaggagagctgcttgaacc-ca-------ggaggcagagatt----gcagcgagc------taagatctcaccactgcactacagc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1356252  92 -   1771730 tcacagctact--tgggaggctgaggcaggagaactgcttaaacc-ca-------ggaggcagaggtt----gcagtgagc------taagatctcaccactgcactccagc
i cebCap1.NW_016107755v1   C 0 I 2316
s aotNan1.NW_018511496v1      54358  92 -    566255 tcacagctcct--tgggaggctgaggcaggagaaccgcttgaacc-ca-------ggaggcagaggtt----gcagtgagc------taagatctcagcagtgcactccagc
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           720264  93 +  18854210 tcccagctaca--tgggagactaagacaggaggattgcttgaacctca-------ggagtttgaggtt----gctgtgatc------taggctgatgccacagcactctagc
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              391117 110 +  72498081 ttttatttattcatgagagacacaggga-gagagaggcagagaca-caggcagagggaggagcaggctccacgcagggagcccaacgtgggacttgatcccgggtctccagg
i canFam3.chr12            I 285 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e colAng1.NW_012115577v1     774306   0 -   1829203 C
e manLeu1.NW_012106264v1     110922   0 +    779361 C
e chlSab2.chr17            30104154   0 -  71996105 C
e cerAty1.NW_012002513v1      73607   0 -    811324 C
e macNem1.NW_012012100v1     850479   0 +   1495729 C
e macFas5.chr4             30554196   0 - 170955103 C
e rheMac8.chr4             31265192   0 + 172585720 C
e nomLeu3.chr1a            75353574 640 + 122973662 I

a score=2506.000000
s hg38.chr6_GL000254v2_alt  1909026 2 +   4827813 at
s panTro5.chr6             30754708 2 + 175400573 at
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178326 2 + 173848474 at
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685313 2 +   2037526 at
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30939236 2 + 171630274 ct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           108817 2 -    750284 ct
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      54450 2 -    566255 ct
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           720357 2 +  18854210 ct
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              391227 2 +  72498081 at
i canFam3.chr12            C 0 I 86
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e colAng1.NW_012115577v1     774306 0 -   1829203 C
e manLeu1.NW_012106264v1     110922 0 +    779361 C
e chlSab2.chr17            30104154 0 -  71996105 C
e cerAty1.NW_012002513v1      73607 0 -    811324 C
e macNem1.NW_012012100v1     850479 0 +   1495729 C
e macFas5.chr4             30554196 0 - 170955103 C
e rheMac8.chr4             31265192 0 + 172585720 C
e nomLeu3.chr1a            75353574 640 + 122973662 I

a score=48937.000000
s hg38.chr6_GL000254v2_alt  1909028 30 +   4827813 gggcgacagcgcaagactccatctcaaaaa
s panTro5.chr6             30754710 30 + 175400573 gggcaacagcgcaagactccatctcaaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178328 30 + 173848474 gggcaacagcgcaagactccatctcaaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685315 30 +   2037526 gggcgacagcgcaagactccatctcaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30939238 28 + 171630274 gagcgacatagcgaga--ctgtctcaaaaa
i calJac3.chr4             C 0 I 901
s saiBol1.JH378327           108819 30 -    750284 gagcgacacagcaagactctgtctcaaaat
i saiBol1.JH378327         C 0 I 1
s aotNan1.NW_018511496v1      54452 30 -    566255 gagtgacacagcgagactctgtctcaaaaa
i aotNan1.NW_018511496v1   C 0 I 3067
s otoGar3.GL873550           720359 28 +  18854210 gggcaacagagtgagactc--tccagaaaa
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              391229 86 +  72498081 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e colAng1.NW_012115577v1     774306  0 -   1829203 C
e manLeu1.NW_012106264v1     110922  0 +    779361 C
e chlSab2.chr17            30104154  0 -  71996105 C
e cerAty1.NW_012002513v1      73607  0 -    811324 C
e macNem1.NW_012012100v1     850479  0 +   1495729 C
e macFas5.chr4             30554196  0 - 170955103 C
e rheMac8.chr4             31265192  0 + 172585720 C
e nomLeu3.chr1a            75353574 640 + 122973662 I

a score=1635.000000
s hg38.chr6_GL000254v2_alt  1909058 4 +   4827813 taaa-
s panTro5.chr6             30754740 4 + 175400573 taaa-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178358 4 + 173848474 taaa-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685345 4 +   2037526 taaa-
i gorGor5.CYUI01015528v1   C 0 C 0
s saiBol1.JH378327           108850 4 -    750284 tata-
i saiBol1.JH378327         I 1 C 0
s otoGar3.GL873550           720387 4 +  18854210 -aaaa
i otoGar3.GL873550         C 0 I 458
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              391229 86 +  72498081 I
e aotNan1.NW_018511496v1      54482 3067 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30939266 901 + 171630274 I
e colAng1.NW_012115577v1     774306 0 -   1829203 C
e manLeu1.NW_012106264v1     110922 0 +    779361 C
e chlSab2.chr17            30104154 0 -  71996105 C
e cerAty1.NW_012002513v1      73607 0 -    811324 C
e macNem1.NW_012012100v1     850479 0 +   1495729 C
e macFas5.chr4             30554196 0 - 170955103 C
e rheMac8.chr4             31265192 0 + 172585720 C
e nomLeu3.chr1a            75353574 640 + 122973662 I

a score=4604.000000
s hg38.chr6_GL000254v2_alt  1909062 6 +   4827813 taaata
s panTro5.chr6             30754744 6 + 175400573 taaata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178362 6 + 173848474 taaata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685349 6 +   2037526 taaata
i gorGor5.CYUI01015528v1   C 0 C 0
s saiBol1.JH378327           108854 6 -    750284 tatata
i saiBol1.JH378327         C 0 I 926
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              391229 86 +  72498081 I
e otoGar3.GL873550           720391 458 +  18854210 I
e aotNan1.NW_018511496v1      54482 3067 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30939266 901 + 171630274 I
e colAng1.NW_012115577v1     774306 0 -   1829203 C
e manLeu1.NW_012106264v1     110922 0 +    779361 C
e chlSab2.chr17            30104154 0 -  71996105 C
e cerAty1.NW_012002513v1      73607 0 -    811324 C
e macNem1.NW_012012100v1     850479 0 +   1495729 C
e macFas5.chr4             30554196 0 - 170955103 C
e rheMac8.chr4             31265192 0 + 172585720 C
e nomLeu3.chr1a            75353574 640 + 122973662 I

a score=4914.000000
s hg38.chr6_GL000254v2_alt  1909068 9 +   4827813 aaaaataaa
s panTro5.chr6             30754750 9 + 175400573 aaaaataaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178368 9 + 173848474 aaaaataaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685355 9 +   2037526 aaaaataaa
i gorGor5.CYUI01015528v1   C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              391229 86 +  72498081 I
e saiBol1.JH378327           108860 926 -    750284 I
e otoGar3.GL873550           720391 458 +  18854210 I
e aotNan1.NW_018511496v1      54482 3067 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30939266 901 + 171630274 I
e colAng1.NW_012115577v1     774306 0 -   1829203 C
e manLeu1.NW_012106264v1     110922 0 +    779361 C
e chlSab2.chr17            30104154 0 -  71996105 C
e cerAty1.NW_012002513v1      73607 0 -    811324 C
e macNem1.NW_012012100v1     850479 0 +   1495729 C
e macFas5.chr4             30554196 0 - 170955103 C
e rheMac8.chr4             31265192 0 + 172585720 C
e nomLeu3.chr1a            75353574 640 + 122973662 I

a score=10798.000000
s hg38.chr6_GL000254v2_alt  1909077 16 +   4827813 aataaaAA---TAAATAAT
s panTro5.chr6             30754759 16 + 175400573 aataaaAA---TAAATAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178377 16 + 173848474 aataaaAA---TAAATAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685364 16 +   2037526 aataaaAA---TAAATAAT
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30940167 19 + 171630274 aatagaaaccccaaattag
i calJac3.chr4             I 901 C 0
s canFam3.chr12              391315 16 +  72498081 ATTGGAAA---CCAGTTAG
i canFam3.chr12            I 86 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e saiBol1.JH378327           108860 926 -    750284 I
e otoGar3.GL873550           720391 458 +  18854210 I
e aotNan1.NW_018511496v1      54482 3067 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e colAng1.NW_012115577v1     774306  0 -   1829203 C
e manLeu1.NW_012106264v1     110922  0 +    779361 C
e chlSab2.chr17            30104154  0 -  71996105 C
e cerAty1.NW_012002513v1      73607  0 -    811324 C
e macNem1.NW_012012100v1     850479  0 +   1495729 C
e macFas5.chr4             30554196  0 - 170955103 C
e rheMac8.chr4             31265192  0 + 172585720 C
e nomLeu3.chr1a            75353574 640 + 122973662 I

a score=6188.000000
s hg38.chr6_GL000254v2_alt  1909093 7 +   4827813 TTTTAAA
s panTro5.chr6             30754775 7 + 175400573 TTTTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178393 7 + 173848474 TTTTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685380 7 +   2037526 Tttaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s calJac3.chr4             30940186 6 + 171630274 tcttaa-
i calJac3.chr4             C 0 C 0
s otoGar3.GL873550           720849 7 +  18854210 TCTTAAG
i otoGar3.GL873550         I 458 I 1
s canFam3.chr12              391331 7 +  72498081 TCctaaa
i canFam3.chr12            C 0 I 2
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e saiBol1.JH378327           108860 926 -    750284 I
e aotNan1.NW_018511496v1      54482 3067 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e colAng1.NW_012115577v1     774306 0 -   1829203 C
e manLeu1.NW_012106264v1     110922 0 +    779361 C
e chlSab2.chr17            30104154 0 -  71996105 C
e cerAty1.NW_012002513v1      73607 0 -    811324 C
e macNem1.NW_012012100v1     850479 0 +   1495729 C
e macFas5.chr4             30554196 0 - 170955103 C
e rheMac8.chr4             31265192 0 + 172585720 C
e nomLeu3.chr1a            75353574 640 + 122973662 I

a score=1799258.000000
s hg38.chr6_GL000254v2_alt  1909100 225 +   4827813 AAGATAGAAGTTTATTTCTCTCACAGGTCAAGAGGTGGACAATCAACAATCCAAG--ATGTGTGACAATGCCACCACTACAAGGTCCCTGAGTATTCAGAAC-CTCAACCCCCAA-CTTTCAGA---------TTCACAACCAC---------AAGCTTctattcactgtcc--aaagtgaagctctggcttcctcatccatgttcaaagcctcaggatggaggaagggctgagaacaccagttgtCTG
s panTro5.chr6             30754782 221 + 175400573 A----AGAAGTTTATTTCTCTCACAGGTCAAGAGGTGGACAATCAACAATCCAAG--ATGTGTGACAATGCCACCACTACAAGGTCCCTGAGTATTCAGAAC-CTCAACCCCCAA-CTTTCAGA---------TTCACAACCAC---------AAGCTTCTATTCACTGTCC--AAAGTGAAGCTCTGGCTTCCTCATCCATGTGCAAAGCCTCAGGATGGAGGAAGGGCTGAGAACACCAGTTGTCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178400 221 + 173848474 A----AGAAGTTTATTTCTCTCACAGGTCAAGAGGTGGACAATCAACAATCCAAG--ATGTGTGACAATGCCACCACTACAAGGTCCCTGAGTATTCAGAAC-CTCAACCCCCAA-CTTTCAGA---------TTCACAACCAC---------AAGCTTCTATTCACTGTCC--AAAGTGAAGCTCTGGCTTCCTCATCCATGTGCAAAGCCTCAGGATGGAGGAAGGGCTGAGAACACCAGTTGTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685387 224 +   2037526 aagatagaagtttatttctctcacaggtcaagaggtggacaatcAACAATCCAAG--ATGTGTGACAATGCCACCACTACAAGGTCCCTGAGTATTCAGAAC-CTCAACCCCCAA-CTTTCAGA---------TTCACAACCAC---------AAACTTCTATTCACTGTCC--AAAGTGAAGCTCTGGCTTCCTCGTCCATGTTCAAAGCCTCAGGAAGGAGGAAGGGCTGAGAACACCAGTTGTCT-
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31265192 225 + 172585720 aagatagaagtttatttctctcacaggtcaagaggtagacaatcAACAATCCAAG--ATATGTGACAATGCCACCATTACAAGGTCCCTGAGTATTCAGAAC-CTCAACCCCCAA-CTGTTAGA---------TTCACAACCAC---------AAACTTCTATTCACAGTCC--AAAGTGAAGCTTTGGCTTCCTCATCCATGTTCAAAGCCTCAGGATGGAGGAAGAGCCAAGAACACCAGTTGTCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30554196 225 - 170955103 AAGATAGAAGTTTATTTCTCTCACAGGTCAAGAGGTAGACAATCAACAATCCAAG--ATATGTGACAATGCCACCATTACAAGGTCCCTGAGTATTCAGAAC-CTCAACCCCCAA-CTGTTAGA---------TTCACAACCAC---------AAACTTCTATTCACAGTCC--AAAGTGAAGCTTTGGCTTCCTCATCCATGTTCAAAGCCTCAGGATGGAGGAAGAGCCAAGAACACCAGTTGTCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     850479 225 +   1495729 AAGATAGAAGTTTATTTCTCTCACAGGTCAAGAGGTAGACAATCAACAATCCAAG--ATATGTGACAATGCCACCATTACAAGGTCCCTGAGTATTCAGAAC-CTCAACCCCCAA-CTGTTAGA---------TTCACAACCAC---------AAACTTCTATTCACAGTCC--AAAGTGAAGCTTTGGCTTCCTCATCCATGTTCAAAGCCTCAGGATGGAGGAAGAGCCAAGAACACCAGTTGTCTG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      73607 221 -    811324 AAGATAGAAGTTTATTTCTCTCACAGGTCAAGAGGTAGACAATCAACAATCCAAG--ATATGTGACAATGCCACCATTACAAGGTCCCTGAGTATTCGGAACGTTCAACCCCCAACCTGTTAGA---------TTCACAACCAC---------AAACTTCTATTCACAGT-C--AAAGTGAAGCTCTGGCTTCCTCATCCATG-TCAAAGCCTCAGA--GGAGGAGAAGC--AGAACACCCGTTGTCTG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30104154 225 -  71996105 AAGATAGAAGTTTATTTCTCTCACAGGTCAAGAGGTAGACAATCAACAATCCAAG--ATATGTGACAATGCCACCATTACAAGGTCCCTGAGTATTCAGAAC-CTCAACCCCCAA-CTGTTAGA---------GTCACAACCAC---------AAACTTCTATTCACAGTCC--AAAGTGAAGCTCTGGCTTCCTCATCCATGTTCAAAGCCTCAGGATGGAGGAAGAGCCAAGAACACCAGTTGTCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     110922 225 +    779361 aagatagaagtttatttctctcacaggtcaagaggtagacaatcAACAATCCAAG--ATATGTGACAATGCCACCATTACAAGGTCCCTGAGTATTCAGAAC-CTCAACCCCCAA-CTGTTAGA---------TTCACAACCAC---------AAACTTCTATTCACAGTCC--AAAGTGAAGCTCTGGCTTCCTCATCCATGTTCAAAGCCTCAGGATGGAGGAAGAGCCAAGAACACCTGTTGTCTG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     774306 224 -   1829203 AAGATAGAAGTTTATTTCTCTCACAGGTCAAGAGGTAGACAATCAA-ACTCCAAG--ATGTGTGACAATGCCACCATTACAAGGTCCCTGAGTATTCAGAAC-CTCAACCCCCAA-CTGTTAGA---------TTCACAACCAC---------AAACTTCTATTCACAGTCC--AAAGTGAAGCTCTGGctttctcatccatgttcaaagcctcaggatggaggaagagccaagaacaccagttgtCTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30940192 216 + 171630274 --gatagaagtttatttctctcacaggtcaagaggtagac-------aatccaag--ATATGTGACAATGCCACCACTACAAGATCCCTGAGTATTCAGAAC-CTCAACCCCCAG-GTTCTAGA---------TTCACAATCAC---------AAACTTCTATTCACAGGTT--AAAGTGAAGATCTAGCTTCCTCGTCCATATTCAAACCCTTAGGATGAAAGAAGGGCCAAGAATACCAGTTGTCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           109786 218 -    750284 aagatagaagtttatttttctcacaggtcaagaggtagac-------aatccaag--ATGTGTGACAATGCCATCACTACATGATCCCTGAGTTTTCAGAAC-CTCAACCCCCAA-GTTTTAGA---------TTCACAATCAC---------AAACTTCTAATCACAGTTT--AAAGTGAAGATCTAGCTTCCTCATCCATGTTCAAACCCTTAGGATGAAAGAAAGGCAGAGAATACCAGTTGTCTG
i saiBol1.JH378327         I 926 C 0
s aotNan1.NW_018511496v1      57549 218 -    566255 aagacagaagtttatttctctcacaggtcaagaggtagac-------aatccaag--atgtgtgacaatgccacCACTACAAGATCCCTGAGTATTCAGAAC-CTCAACCCCCAA-GTTTTAGA---------TTCACAATCAC---------AAACTTCTATTCAGAGTTT--AAAGTGAAGATCTAGCTTCCTCGTCCATGTTCAAACCCTTAGGATGAAAGAAGGGCCGAGAATACCAGTTGTCTG
i aotNan1.NW_018511496v1   I 3067 C 0
s otoGar3.GL873550           720857 218 +  18854210 AAAATA-ATTTTTATTTCTCTGA---GTTGAGAGGTAGAC-------AGTCCAAGGCATATGTGACAACCATTTCACCACAGAATTCTCAGGTATTCAGGAC-CCCAAGCCCCAC-TGGTAAGATATACAATCTACACAATCAC---------GAACTCCTATTCA-----C--AAAGGGGGACTTTAGCTTCCTCATTCATGTTCAAAGCCTCAGGAC--AGAAAGCTTAGAGGACACCAGTTTTCTT
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12              391340 197 +  72498081 aaaatagaagtttatttctc--acaactcaggaggtagac-------agcacaag--gcat-----aatgctacc---acaaggtcctcaggtattcagaac-ccctcCCTTCAG-ATTCCAGC---------TCCAAAATTACTGGGGTCAGATCCTCCTATTCATGGTTTGGGAAGTGGA---TAAGCTAACTTATCCATGTTCCAATCCTCAGTATG------GGCCTTAAAA-------------
i canFam3.chr12            I 2 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e nomLeu3.chr1a            75353574 640 + 122973662 I

a score=88545.000000
s hg38.chr6_GL000254v2_alt  1909325 34 +   4827813 GGAAGAAACttcttttttt----------------------------ttttttt----tttttttt---
s panTro5.chr6             30755003 28 + 175400573 GGAAGAAACttc------t----------------------------ttttttt----tttttttt---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178621 26 + 173848474 GGAAGAAACttc------------------------------------tttttt----tttttttt---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685611 24 +   2037526 GGAAGAAACttc--------------------------------------tttt----tttttttt---
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31265417 33 + 172585720 GGAAGAAACTTC------Cttttt-----------------------ttttttt----tttttttt---
i rheMac8.chr4             C 0 I 655
s macFas5.chr4             30554421 33 - 170955103 GGAAGAAACTTC------Cttttt-----------------------ttttttt----tttttttt---
i macFas5.chr4             C 0 I 1
s macNem1.NW_012012100v1     850704 28 +   1495729 GGAAGAAACTTC------C----------------------------ttttttt----tttttttt---
i macNem1.NW_012012100v1   C 0 I 1
s cerAty1.NW_012002513v1      73828 27 -    811324 GG-AGAAACttc------t----------------------------ttttttt----tttttttt---
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30104379 28 -  71996105 GGAAGAAACTTC------C----------------------------ttttttt----tttttttt---
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012106264v1     111147 28 +    779361 GGAAGAAACTTC------C----------------------------ttttttt----tttttttt---
i manLeu1.NW_012106264v1   C 0 I 2
s colAng1.NW_012115577v1     774530 28 -   1829203 GGAAGAAACTTC------C----------------------------ttttttt----tttttttt---
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           721075 48 +  18854210 --------TTTC------CCTTTTTCTTTCCTTTCTTTCTTTCTttcttttttt----tttttttt---
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              391537 24 +  72498081 ---------------------------------------------tctttttttaagattttatttatt
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e saiBol1.JH378327           110004  0 -    750284 C
e aotNan1.NW_018511496v1      57767  0 -    566255 C
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940408  0 + 171630274 C
e nomLeu3.chr1a            75353574 640 + 122973662 I

a score=35611.000000
s hg38.chr6_GL000254v2_alt  1909359 16 +   4827813 --------------------tgagacggagtc-tcag
s panTro5.chr6             30755031 16 + 175400573 --------------------tgagacggagtc-tcag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178647 16 + 173848474 --------------------tgagacggagtc-tcag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685635 16 +   2037526 --------------------tgagacggagtc-tcag
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             30554455 14 - 170955103 --------------------tgagacagagtc-tc--
i macFas5.chr4             I 1 C 0
s macNem1.NW_012012100v1     850733 14 +   1495729 --------------------tgagacagagtc-tc--
i macNem1.NW_012012100v1   I 1 C 0
s cerAty1.NW_012002513v1      73855 15 -    811324 --------------------tgagacagagtcttc--
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30104409 13 -  71996105 ---------------------gagacagagtc-tc--
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012106264v1     111177 14 +    779361 --------------------ggagacagagtc-tc--
i manLeu1.NW_012106264v1   I 2 C 0
s colAng1.NW_012115577v1     774558 13 -   1829203 ---------------------gagacagagtc-tc--
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           721123 15 +  18854210 --------------------ttagacagaatc-tc-a
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              391561 36 +  72498081 cataagagacacagggagagagaggcagagtc-acag
i canFam3.chr12            C 0 I 341
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e saiBol1.JH378327           110004  0 -    750284 C
e aotNan1.NW_018511496v1      57767  0 -    566255 C
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940408  0 + 171630274 C
e rheMac8.chr4             31265450 655 + 172585720 I
e nomLeu3.chr1a            75353574 640 + 122973662 I

a score=83463.000000
s hg38.chr6_GL000254v2_alt  1909375 21 +   4827813 ctctgtcgcccaggctggagt
s panTro5.chr6             30755047 21 + 175400573 ctctgtcgcccaggctggagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178663 21 + 173848474 ctctgtcgcccaggctggagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685651 21 +   2037526 ctctgtcgcccaggctggagt
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             30554469 19 - 170955103 --ctgtcgcccagcctggagt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     850747 19 +   1495729 --ctgtcgcccagcctggagt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      73870 19 -    811324 --ctgtcgcccagcctggagt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30104422 19 -  71996105 --ctgtcgcccagcctggagt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     111191 19 +    779361 --ctgtcacccagcctggggt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     774571 19 -   1829203 --ctgtcgcccagcctggagt
i colAng1.NW_012115577v1   C 0 C 0
s otoGar3.GL873550           721138 21 +  18854210 ctctgtcacccttggtagagt
i otoGar3.GL873550         C 0 I 2506
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              391597 341 +  72498081 I
e saiBol1.JH378327           110004  0 -    750284 C
e aotNan1.NW_018511496v1      57767  0 -    566255 C
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940408  0 + 171630274 C
e rheMac8.chr4             31265450 655 + 172585720 I
e nomLeu3.chr1a            75353574 640 + 122973662 I

a score=195705.000000
s hg38.chr6_GL000254v2_alt  1909396 59 +   4827813 gcag-tggcatgatcttggctcactgcaagctccgcctcccaggttcacgccatt---ctcct
s panTro5.chr6             30755068 59 + 175400573 gcag-tggaatgatcttggctcactgcaagctccgcctcccaggttcacgccatt---ctcct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178684 59 + 173848474 gcag-tggcatgatcttggctcactgcaagctccgcctcccaggttcacgccatt---ctcct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685672 59 +   2037526 gcag-tggcatgatctcggctcactgcaagctccgcctcccaggttcacgccatt---ctcct
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             30554488 56 - 170955103 gcag-tggcacaatctcagctcactgcaagctccgcctcccaggttcacgctatt---ct---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     850766 56 +   1495729 gcag-tggcacaatctcagctcactgcaagctccgcctcccaggttcacgctatt---ct---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      73889 56 -    811324 gcagatggcacaatctcggctcactgcaa-ctccgcctcccaggttcatgctatt---ct---
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30104441 56 -  71996105 gcag-tggcacaatctcggctcactgcaagctccgcctcccaggttcacactatt---ct---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     111210 56 +    779361 gcag-tggcacaatctcggctcactgcaagctccgcctcccaggttcacgctatt---ct---
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     774590 59 -   1829203 tcag-tggcacaatctcagctcactgcaagctccacctccgaggttcacgctattctcct---
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              391597 341 +  72498081 I
e saiBol1.JH378327           110004  0 -    750284 C
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      57767  0 -    566255 C
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940408  0 + 171630274 C
e rheMac8.chr4             31265450 655 + 172585720 I
e nomLeu3.chr1a            75353574 640 + 122973662 I

a score=147924.000000
s hg38.chr6_GL000254v2_alt  1909455 31 +   4827813 gcctcagcctcccgagtagctgggac--tacag
s panTro5.chr6             30755127 31 + 175400573 gcctcagcctcccgagtagctgggac--tacag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178743 31 + 173848474 gcctcagcctcccgagtagctgggac--tacag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685731 31 +   2037526 gcctcagcctcccgagtagctgggac--tacag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75354214 33 + 122973662 gcgtcagcctcccaagtagctgggacatggtgg
i nomLeu3.chr1a            I 640 C 0
s macFas5.chr4             30554544 31 - 170955103 gcctcagcctcccgagtagctgggac--tacag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     850822 31 +   1495729 gcctcagcctcccaagtagctgggac--tacag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      73945 31 -    811324 gcctcagcctcccgagtagctgggac--tacag
i cerAty1.NW_012002513v1   C 0 I 22
s chlSab2.chr17            30104497 31 -  71996105 gcctcagcctcctgagtagctgggac--tacag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     111266 31 +    779361 gcctcagcctcccgagtagctgggac--tacag
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     774649 31 -   1829203 gcctcagcctcccaagtagctgggac--tacag
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              391597 341 +  72498081 I
e saiBol1.JH378327           110004  0 -    750284 C
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      57767  0 -    566255 C
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940408  0 + 171630274 C
e rheMac8.chr4             31265450 655 + 172585720 I

a score=92835.000000
s hg38.chr6_GL000254v2_alt  1909486 25 +   4827813 gcgcccaccaccatgcccagctaat
s panTro5.chr6             30755158 25 + 175400573 gcgcccaccaccatgcccagctaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178774 25 + 173848474 gcgcccaccaccatgcccagctaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685762 25 +   2037526 gcgcccaccaccatgcccagctaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75354247 25 + 122973662 gcgcccaccaccatgcccggctaat
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30554575 25 - 170955103 gtgcccgccaccatgctcggctaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     850853 25 +   1495729 gtgcccgccaccatgctcagctaat
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30104528 25 -  71996105 gtgcccgccaccatgctcggctaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     111297 25 +    779361 gtgcccgccaccatgctcggctaat
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     774680 25 -   1829203 gtgcccaccaccacacttggctaat
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              391597 341 +  72498081 I
e saiBol1.JH378327           110004  0 -    750284 C
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      57767  0 -    566255 C
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940408  0 + 171630274 C
e cerAty1.NW_012002513v1      73976 22 -    811324 I
e rheMac8.chr4             31265450 655 + 172585720 I

a score=589139.000000
s hg38.chr6_GL000254v2_alt  1909511 131 +   4827813 tttt-tgtgtttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacctggtgatctgcttgcctcggcctcccaaagtgctgggattacaggtgt-gagccacc-acgcccagcc
s panTro5.chr6             30755183 131 + 175400573 tttt-tgtgtttttagtagagatcgggtttcaccatgttagccaggatggtctcgatctcctgacctggtgatctgcctgcctcggcctcccaaagtgctgggattacaggcgt-gagccacc-gcgcccagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178799 132 + 173848474 ttttgngttttttaagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacctggtgatctgcctgcctcggcctcccaaagtgctgggattacaggcgt-gagccacc-gcgcccagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685787 131 +   2037526 tttt-tgtgtttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacctggtgatctgcctgcctcggcctcccaaagtgctgggattacaggcgt-gagccacc-gcgcccagcc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75354272 131 + 122973662 tttt-tgtgtttttagtagagatggggtttcaccgtgttaaccaggagggtctcggtctcctgacctcgtgatctgcctgcctcggtctcccaaagtgctgggattacaggcgt-gagccagc-acgtctggcc
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30554600 131 - 170955103 tttt-tgtgtttttagtagatacggggtttcaccatgttagccaggatggtctctatctcctgaccttgtgatctgcccacctcggcctcccaaagtgctaggattacaggtat-aagccact-gcgtccagcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     850878 131 +   1495729 tttt-tgtgtttttagtagatacggggtttcaccatgttagccaggatggtctctatctcctgaccttgtgatctgcccacctcggcctcccaaagtgctaggattacaggtat-aagccact-gcgtccagcc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      73998 132 -    811324 tttt-cgtgtttttagtagatacggggtttcaccatgttagccaggatggtctc-atctcctgaccttgtgatctgcccacctcggcctcccaaagtgctgggattacaggtataaagccactggcgcccagcc
i cerAty1.NW_012002513v1   I 22 C 0
s chlSab2.chr17            30104553 131 -  71996105 tttt-tgtgtttttagtagatacggggtttcaccatgttagccaggatggtctctatctcctgaccttgtgatctgcccacctcggcctcccaaagtgctgggattacaggtat-aagccact-gcgcccagcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     111322 131 +    779361 tttt-tgtgtttttagtagatacggggtttcaccatgttagccaggatggtctctatctcctgaccttgtgatctgcccacctcggcctcccaaagtgctgggattacaggtat-aagccact-gcgcccagcc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     774705 131 -   1829203 tttt-tgtgattttagtagatacggggtttcaccatgttagccaggatggtctctatctcctgaccttgtgatctgcccacctcggcctcccaaagtgccgggattacaggtgt-gagccact-gtgcccggcc
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              391597 341 +  72498081 I
e saiBol1.JH378327           110004   0 -    750284 C
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      57767   0 -    566255 C
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940408   0 + 171630274 C
e rheMac8.chr4             31265450 655 + 172585720 I

a score=440345.000000
s hg38.chr6_GL000254v2_alt  1909642 58 +   4827813 GGAAGAAACTTCTTAAAAGTTAACTTATAACTCCTCAACTTATGGGCAAGC-ATTTAAG
s panTro5.chr6             30755314 58 + 175400573 GGAAGAAACTTCTTAAAAGTTAACTTATAGCTCCTCAACTTATGGGCAAGC-ATTTAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178931 58 + 173848474 GGAAGAAACTTCTTAAAAGTTAACTTATAGCTCCTCAACTTATGGACAAGC-ATTTAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685918 58 +   2037526 GGAAGAAACTTCTTAAAAGTTAACTTATAGCTCCTCAACTTATGGGCAAGC-ATTTAAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75354403 58 + 122973662 AGAAGAAACTTCTTAAAAGTTAACTTATAGCTCCTCAACTTATGGGCAAGC-ATTTAAG
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30554731 58 - 170955103 AGAAGAAACTTCTTAAAAGTTAACTTACAGCTCCTCAACTTATGGGCAAGC-ATTTAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     851009 58 +   1495729 AGAAGAAACTTCTTAAAAGTTAACTTACAGCTCCTCAACTTATGGGCAAGC-ATTTAAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      74130 59 -    811324 AGAAGAAAACTTCTTAAAGTTAACTTACAGCTCCTCAACTTATGGGCAAGCAATTTAAG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30104684 58 -  71996105 AGAAGAAACTTCTTAAAAGTTAACTTACAGCTCCTCAACTTATGGGCAAGC-ATTTAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     111453 58 +    779361 AGAAGAAACTTCTTAAAAGTTAACTTACAGCTCCTCAACTTATGGGCAAGC-ATTTAAG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     774836 58 -   1829203 AGAAGAAACTTCTTAAAAGTTAGCTTACAGCTCCTCAACTCATGGGCAAGC-ATTTAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30940408 58 + 171630274 GGAAGAAACTTCTTCAAAATTAACTTACAGCTCTTCAACTTACAGGCAAGC-ATTTAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           110004 58 -    750284 GGAAGAAACTTCTTCAAAGTTAACTTACAGCTCTTCAACTTACAGGCAAGC-ATTTAAG
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      57767 58 -    566255 GGAAGAAACTTCTTCAAAGTTAACTTACAGCTCTTCAACTTACAGGTAAGC-ATTTAAG
i aotNan1.NW_018511496v1   C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              391597 341 +  72498081 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e rheMac8.chr4             31265450 655 + 172585720 I

a score=414623.000000
s hg38.chr6_GL000254v2_alt  1909700 53 +   4827813 TTGAGTTTATTAATTCTACAGAGGTTATCTCCCTAAAAGGGGG---CTAGGAatga
s panTro5.chr6             30755372 53 + 175400573 TTGAGTTTATTAATTCTACAGAGGTTATCTCCCTAAAAGGGGG---CTAGGAatga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31178989 53 + 173848474 TTGAGTTCATTAATTCTACAGAGGTTATCTCCCTAAAAGGGGG---CTAGGAatga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     685976 52 +   2037526 TTGAGTTTATTAATTCTACAGAGGTTATCTCCCTAAAA-GGGG---CTAGGAatga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75354461 53 + 122973662 TTGAGTTTATTAATTCTACAGAGGTTATCTCCCTAAAAGAGGG---CTAGGAatga
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30554789 53 - 170955103 CTGAGTTTATTAATTCTACAGAGGTTATCTCCCTAAAAgaggg---ttaggaatga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     851067 53 +   1495729 CTGAGTTTATTAATTCTACAGAGGTTATCTCCCTAAAAgaggg---ttaggaatga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      74189 53 -    811324 CTGAGTTATTCATATCTACAGAGGTTATCTCCCTAAAAGGAGG---CTAGAATGGA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30104742 53 -  71996105 CTGAGTTTATTAATTCTACAGAGGTTATCTCCCTAAAAGAGGG---TTAGGAATGA
i chlSab2.chr17            C 0 I 667
s manLeu1.NW_012106264v1     111511 53 +    779361 CTGAGTTTATTAATTCTACAGAGGTTATCTCCCTAAAAgaggg---ctaggaatga
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     774894 53 -   1829203 CTGAGTTTATTAATTCTACAGAGGTTATCTCCCTAAAAGAGGG---CTAGGAATGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30940466 56 + 171630274 TTGAGTTTATTAATTCTACAGAGGTTATCTCCCTAAAAGAGGGCTTCTAGGAatga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           110062 56 -    750284 TTGAGTTTATTAATTCTACAGAGGTTATCTCCCTAaaaaagggcttctaggaatga
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      57825 56 -    566255 TTGAGTTTATTAATTCTACAGAGGTTATCTCCCTAaaaaagggcttctaggaatga
i aotNan1.NW_018511496v1   C 0 C 0
s canFam3.chr12              391938 45 +  72498081 TCAGATTTATTAATTCT--GAAGGTTAtctcactaa------g---ttagaaatga
i canFam3.chr12            I 341 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e rheMac8.chr4             31265450 655 + 172585720 I

a score=243559.000000
s hg38.chr6_GL000254v2_alt  1909753 34 +   4827813 caggattagggtttgtgtttggtgatttcaaaag
s panTro5.chr6             30755425 34 + 175400573 caggattagggtttgtgtttggtgatttcaaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31179042 34 + 173848474 caggattagggtttgtgtttggtgatttcaaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     686028 34 +   2037526 caggattagggtttgtgtttggtgatttcaaaag
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75354514 34 + 122973662 caggattagggtttgtgtttggtgatttcaaaag
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30554842 34 - 170955103 cagggttagggtttgtgtttggtgatttcaaaag
i macFas5.chr4             C 0 I 303
s macNem1.NW_012012100v1     851120 34 +   1495729 cagggttagggtttgtgtttggtgatttcaaaag
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      74242 33 -    811324 CAGGGTTGCGGTTTGTGTTT-GTGATTTCAAAAG
i cerAty1.NW_012002513v1   C 0 C 0
s manLeu1.NW_012106264v1     111564 34 +    779361 cagggttagggtttgtgtttggtgatttcaaaag
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     774947 34 -   1829203 CAAGGTTAGGGTTTGTGTTTGGTGATTTCAAAAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30940522 34 + 171630274 caggattagggtttgtgttcgttgatttcaaaag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           110118 34 -    750284 caggattagggtttgtgttcgttgatttcaaaag
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      57881 34 -    566255 caggattagggtttgtgtttgttgatttcaaaag
i aotNan1.NW_018511496v1   C 0 C 0
s canFam3.chr12              391983 34 +  72498081 caggtttagggtttctgctaggtgatttggggga
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e chlSab2.chr17            30104795 667 -  71996105 I
e rheMac8.chr4             31265450 655 + 172585720 I

a score=58115.000000
s hg38.chr6_GL000254v2_alt  1909787 10 +   4827813 aaa----caggaaa-----
s panTro5.chr6             30755459 10 + 175400573 aaa----caggaaa-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31179076 10 + 173848474 aaa----caggaaa-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     686062 10 +   2037526 aaa----caggaaa-----
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75354548 10 + 122973662 aag----caggaaa-----
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             30555179 10 - 170955103 aag----cagaaaa-----
i macFas5.chr4             I 303 C 0
s macNem1.NW_012012100v1     851154 10 +   1495729 aag----cagaaaa-----
i macNem1.NW_012012100v1   C 0 I 309
s cerAty1.NW_012002513v1      74275 10 -    811324 AAG----CAGAAAA-----
i cerAty1.NW_012002513v1   C 0 I 336
s manLeu1.NW_012106264v1     111598 10 +    779361 aag----cagaaaa-----
i manLeu1.NW_012106264v1   C 0 I 312
s colAng1.NW_012115577v1     774981 10 -   1829203 AAG----CAGAAAA-----
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30940556 10 + 171630274 aag----caggaaa-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           110152 10 -    750284 aag----caggaaa-----
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      57915 10 -    566255 aag----caggaaa-----
i aotNan1.NW_018511496v1   C 0 C 0
s canFam3.chr12              392017 19 +  72498081 aaggttcaaggaaatgaaa
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e chlSab2.chr17            30104795 667 -  71996105 I
e rheMac8.chr4             31265450 655 + 172585720 I

a score=79895.000000
s hg38.chr6_GL000254v2_alt  1909797 28 +   4827813 ttgttctggcttagatgctgtcagaaag
s panTro5.chr6             30755469 28 + 175400573 ttgttctggcttagatgctgtcagaaag
i panTro5.chr6             C 0 I 13
s panPan2.chr6             31179086 28 + 173848474 ttgttctggcttagatgctgtcagaaag
i panPan2.chr6             C 0 I 13
s gorGor5.CYUI01015528v1     686072 28 +   2037526 ttgttctggcttagatgctgtcagaaag
i gorGor5.CYUI01015528v1   C 0 I 13
s nomLeu3.chr1a            75354558 28 + 122973662 ttgttctggcttagatgctgtcagaaaa
i nomLeu3.chr1a            C 0 I 13
s macFas5.chr4             30555189  7 - 170955103 ttgttct---------------------
i macFas5.chr4             C 0 C 0
s colAng1.NW_012115577v1     774991  7 -   1829203 TTGttct---------------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30940566 28 + 171630274 ttgttctggcttagatgctgtcagaaag
i calJac3.chr4             C 0 I 13
s saiBol1.JH378327           110162 28 -    750284 ttgttctggcttagatgctgtcagaaag
i saiBol1.JH378327         C 0 I 13
s aotNan1.NW_018511496v1      57925 28 -    566255 ttgttctggcttagatgctgtcagaaag
i aotNan1.NW_018511496v1   C 0 I 13
s canFam3.chr12              392036 28 +  72498081 ttggtctgggttgggtgctctcaggaag
i canFam3.chr12            C 0 I 11
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e manLeu1.NW_012106264v1     111608 312 +    779361 I
e chlSab2.chr17            30104795 667 -  71996105 I
e cerAty1.NW_012002513v1      74285 336 -    811324 I
e macNem1.NW_012012100v1     851164 309 +   1495729 I
e rheMac8.chr4             31265450 655 + 172585720 I

a score=205954.000000
s hg38.chr6_GL000254v2_alt  1909825 26 +   4827813 atgact--acttctt-aatcttatctaga
s panTro5.chr6             30755510 26 + 175400573 atgact--acttctt-aatcttatctaga
i panTro5.chr6             I 13 C 0
s panPan2.chr6             31179127 26 + 173848474 atgact--acttctt-aatcttatctaga
i panPan2.chr6             I 13 C 0
s gorGor5.CYUI01015528v1     686113 26 +   2037526 atgact--acttctt-aatcttatctaga
i gorGor5.CYUI01015528v1   I 13 C 0
s nomLeu3.chr1a            75354599 23 + 122973662 atg-----actcctt-aatcttatctaga
i nomLeu3.chr1a            I 13 C 0
s rheMac8.chr4             31266105 26 + 172585720 ATGACT--ACTTCTT-aatcttatctaga
i rheMac8.chr4             I 655 C 0
s macFas5.chr4             30555196 26 - 170955103 atgact--acttctt-aatcttacctaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     851473 26 +   1495729 atgact--acttctt-aatcttatctaga
i macNem1.NW_012012100v1   I 309 C 0
s chlSab2.chr17            30105462 26 -  71996105 atgact--acttctt-aatcttatctaga
i chlSab2.chr17            I 667 C 0
s manLeu1.NW_012106264v1     111920 26 +    779361 atgact--acttctt-aatcttatctaga
i manLeu1.NW_012106264v1   I 312 C 0
s colAng1.NW_012115577v1     774998 26 -   1829203 atgact--acttctt-aatcttatctaga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30940607 26 + 171630274 atgatt--acatctt-aatcttacctaga
i calJac3.chr4             I 13 C 0
s saiBol1.JH378327           110203 27 -    750284 atgatt--acctcttaaatcttacctaga
i saiBol1.JH378327         I 13 C 0
s aotNan1.NW_018511496v1      57966 26 -    566255 atgatt--acatctt-aatcttacctaga
i aotNan1.NW_018511496v1   I 13 C 0
s canFam3.chr12              392075 28 +  72498081 gtgaatgcacatctt-aatctcatctaga
i canFam3.chr12            I 11 I 209
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e cerAty1.NW_012002513v1      74285 336 -    811324 I

a score=671775.000000
s hg38.chr6_GL000254v2_alt  1909851 73 +   4827813 aggagggagaaatgaaat-atggctaaag-ctgtaa--ggt-aaaaaag----ccaacacattttagctgacagggaactgt
s panTro5.chr6             30755536 73 + 175400573 aggagggagaaatgaaat-atggctaaag-ctgtaa--ggt-aaaaatg----ccaacacattttagctgacagggaactgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31179153 73 + 173848474 aggagggagaaatgaaat-atggctaaag-ctgtaa--ggt-aaaaatg----ccaacacattttagctgacagggaactgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     686139 73 +   2037526 aggagggagaaatgaaat-atggctaaag-ctgtaa--ggt-aagaaag----ccaacacattttagctgacagggaactgt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75354622 73 + 122973662 aggagggagaaatgaaat-atggctaaag-ctgtaa--ggt-aaaaaag----ccaacacattttagctgacagggaactgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31266131 73 + 172585720 aggagggagaaatgaaat-atgactaaag-ctgtaa--ggt-aaaaaag----ccaatacattttagctgacagggaactgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30555222 73 - 170955103 aggagggagaaatgaaat-atgactaaag-ctgtaa--ggt-aaaaaag----ccaatacattttagctgacagggaactgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     851499 73 +   1495729 aggagggagaaatgaaat-atgactaaag-ctgtaa--ggt-aaaaaag----ccaatacattttagctgacagggaactgt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      74621 74 -    811324 AGGAGGGAGAAATGAAATGATGATAAAAGCCTGTAA--GGT-AAAACAG----CCAATACA-TTTAGCTGACAGGAAACTGT
i cerAty1.NW_012002513v1   I 336 C 0
s chlSab2.chr17            30105488 73 -  71996105 aggagggagaaatgaaat-atgactaaag-ctgtaa--ggt-aaaaaag----ccaatacattttagctgacagggaactgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     111946 73 +    779361 aggagggagaaatgaaat-atgactaaag-ctgtaa--ggt-aaaaaag----ccaatacattttagctgacagggaactgt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     775024 73 -   1829203 aggagggagaaacgaaat-acgactaaag-ctgtaa--ggt-aaaaaag----ccagtacattttagctgacagggaactgt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30940633 73 + 171630274 aggagggagaaatgaaat-atggctaaag-atgtaa--ggc-aaaaaaa----ccaacacattttagctgagagagaactgt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           110230 74 -    750284 aggagggagaaatgaaat-atggctaaag-atgtaa--ggcaaaaaaaa----ccaacacattttagctgagagggaactgt
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      57992 71 -    566255 aggagagagaaatgaaat-atggctaaag-atgtaa--ggc-aaaaaaa------aacacattttagctaagagggaactgt
i aotNan1.NW_018511496v1   C 0 I 8
s canFam3.chr12              392312 79 +  72498081 aggagggaggaatgaaac-atggctaaaa-gtgcagttggt-caaaaagagccctcattcattttagcagagagggggctgt
i canFam3.chr12            I 209 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I

a score=17194.000000
s hg38.chr6_GL000254v2_alt  1909924  6 +   4827813 ------gtgg--tg------------------
s panTro5.chr6             30755609  6 + 175400573 ------gtgg--tg------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31179226  6 + 173848474 ------gtgg--tg------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     686212  6 +   2037526 ------ttgg--tg------------------
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75354695  6 + 122973662 ------ttca--tg------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31266204  6 + 172585720 ------ttgg--tg------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30555295  6 - 170955103 ------ttgg--tg------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     851572  6 +   1495729 ------ttgg--tg------------------
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      74695  8 -    811324 ------CTGGGTGG------------------
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30105561  6 -  71996105 ------ttgg--tg------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     112019  6 +    779361 ------ttgg--tg------------------
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     775097  6 -   1829203 ------ttgg--tg------------------
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30940706  6 + 171630274 ------ttgg--tg------------------
i calJac3.chr4             C 0 I 3196
s saiBol1.JH378327           110304  6 -    750284 ------ttgg--tG------------------
i saiBol1.JH378327         C 0 I 14
s canFam3.chr12              392391 30 +  72498081 ttaatattta--tggtttgcatgacgaccttg
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58063  8 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I

a score=1926494.000000
s hg38.chr6_GL000254v2_alt  1909930 319 +   4827813 tttttgtgcttagacaagattttgaagtttgtctaatttcatcacaaacacaggatgaccttgtttgacactgattttctgtgagatagtttatgttcaacaaga--gtaccatggcctaactatgggcaacaggccagctcccagcaacacc-aaagcctgccagttattgtcaggccagttcccaattctcagggactgtttttctTAAAAGTATGCAAACATATAATTACAGGTTGAGATGAATCATATGAAGGAAATAAAT--GGGGTACTGAATAGA-AACAGTAGTTGGGGAGCTACTCAAGACATGGTggccgggcgc
s panTro5.chr6             30755615 319 + 175400573 tttttgtgcttagacaagattttgaagtttgtctaatttcatcacaaacacaggatgaccttgtttgacactgattttctgtgagatagtttatgttcaacaaga--gtaccatggcctaactatgggcaacaggccagctcccagcaacacc-aaagcctgccagttattgtcaggccagttcccaattctcagggactgtttttctTAAAAGTATGCAAACATATAATTACAGGTTGAGATGAATCATATGAAGGAAATAAAT--GGGGTACTGAATAGA-AACAGTAGTTGGGGAGCTACTCAAGACATGGTggccgggcgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31179232 319 + 173848474 tttttgtgcttagacaagattttgaagtttgtctaatttcatcacaaacacaggatgaccttgtttgacactgattttctgtgagatagtttatgttcaacaaga--gtaccatggcctaactatgggcaacaggccagctcccagcaacacc-aaagcctgccagttattgtcaggccagttcccaattctcagggactgtttttctTAAAAGTATGCAAACATATAATTACAGGTTGAGATGAATCATATGAAGGAAATAAAT--GGGGTACTGAATAGA-AACAGTAGTTGGGGAGCTACTCAAGACATGGTggccgggcgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     686218 319 +   2037526 tttttgtgcttagacaagattttgaagtttgtctaatttcatcacaaacacaggatgaccttgtctgacactgattttctgtgagatagtttatgttcaacaaga--gtaccatggcctaactatgggcaacaggccagctcccagcaacacc-aaagcctgccagttattgtcaggccagttcccaattctcagggactgtttttctTAAAAGTATGCAAACATATAATTACAGGTTGAGATGAATCATATGAAGGAAATAAAT--GGGGTACTGAATAGA-AACAGTAGTTGGGGAGCTACTCAAGACATGGTggccgggcgc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75354701 319 + 122973662 tttttgtgcttagacaagattttgaagtttgtctaatttcatcacaaacacagaatgaccttgtttgccactgattttctgtgagatagtttatgttcaacaaga--gtaccgaggcctaactatggataacaggccagctcccagcaacacc-agagcctgccagttattgtcaggccagttcccaattctcagggactgtttttctTAAAAGTATACAAACATATAATTACAGGTTGAGATGAATCATATGAAGGAAATAAAT--GGGGTACTGAATAGA-AACAGTAGTTGGGGAGCTACTCAAGACATGGTggccgggcgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31266210 319 + 172585720 tttttgtgcttagacaagattttgaagtttgtctaacttcatcacaaacacagaatgaccttgtttgacactgattttctgtgagatagtttatgttcaacaaga--gtaccagggcctaactatgggcaacaggccagctcccagcaacacc-aaagcctgctagttattgtcaggccaattcccaattctcagggactgtttttctTAAAAGTAAACAAACATATAATTACAGGTTGAGATGAATCATATGAAGGAAATAAAT--GGGGTACTGAATAGA-AACAGTAGTTGGGGAGCTACTCAAGACATGGTggctgggcgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30555301 319 - 170955103 tttttgtgcttagacaagattttgaagtttgtctaacttcatcacaaacacagaatgaccttgtttgacactgattttctgtgagatagtttatgttcaacaaga--gtaccagggcctaactatgggcaacaggccagctcccagcaacacc-aaagcctgctagttattgtcaggccaattcccaattctcagggactgtttttctTAAAAGTAAACAAACATATAATTACAGGTTGAGATGAATCATATGAAGGAAATAAAT--GGGGTACTGAATAGA-AACAGTAGTTGGGGAGCTACTCAAGACATGGTggctgggcgc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     851578 319 +   1495729 tttttgtgcttagacaagattttgaagtttgtctaacttcatcacaaacacagaatgaccttgtttgacactgattttctgtgagatagtttatgttcaacaaga--gtaccagggcctaactatgggcaacaggccagctcccagcaacacc-aaagcctgctagttattgtcaggccaattcccaattctcagggactgtttttctTAAAAGTAAACAAACATATAATTACAGGTTGAGATGAGTCATATGAAGGAAATAAAT--GGGGTACTGAATAGA-AACAGTAGTTGGGGAGCTACTCAAGACATGGTggctgggcgc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      74703 310 -    811324 TTTTTTGGCTTAGACAAGA-TTTGAAGTTGTCATAACTTCATC-CACAcacagaatgaccttgtttgacactgattttctgtgagatagtttatgttcaac-aga--gta-cagggcctaactatgggcaacaggccagct-ccagcaacaccaaaagcctgctagttattgtcaggccaattcccaattctcagggactgtttttctTAAAAGTAAACAATA--ATAATTACAGGTTGAGA-GAATCATATGAAGGAAAATAAT--GGGGTACTGAATAGA-AACAGTAGTT-GGGAGCTACTCAAGACAT-GTGGACTggcgc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30105567 321 -  71996105 tgtttgtgcttagacaggattttgaagtttgtctaacttcatcacaaacacagaatgaccttgtttgacactgattttctgtgagatagtttatgttcaacaagattgtaccagggtctaactatgggcaacaggccagctcccagcaacacc-aaagcctgctagttattgtcaggccaattcccaattctcagggactatttttctTAAAAGTAAACAAACATATAATTACAGGTTGAGATGAATCATATGAAGGAAATAAAT--GGGGTACTGAATAGA-AACAGTAGTTGGGGAGCTACTCAAGACATGGTggctgggcac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     112025 319 +    779361 tttttgtgcttagacaagattttgaagtttgtctaacttcatcacaaacacagaatgaccttgtttgacactgattttctgtgagatagtttatgttcaacaaga--gtaccagggcctaactatgagcaacaggccagctcccagcaacacc-aaagcctgctagttattgtcaggccaattcccaattctcagggactgtttttctTAAAAGTAAACAAACATATAATTACAGGTTGAGATGAATCATATGAAGGAAATAAAT--GGGGTACTGAATAGA-AACAGTAGTTGGGGAGCTACTCAAGACATGGTggctgagcgc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     775103 319 -   1829203 tttttgtgcttagacaagattttgaagtttgtctaacttcatcacaaacacagaatgaccttgtttgacactgattttctgtgagatagtttatgttcaacaaga--gtaccagggcctaactatgggcaacaggccagctcccagcaacacc-aaagcctgctagttattgtcaggccaattcccaattctcagggattgtttttctTAAAAGTAAACAAACATATAATTGCAGGTTGAGATTAATCATATGAAGGAAATAAAT--GGGGTACTGAATAGA-AACAGTAGTTGGGGAGCTACTCAAGACATGGTggctgggcat
i colAng1.NW_012115577v1   C 0 C 0
s canFam3.chr12              392421 268 +  72498081 tctttgtgcttagagaaggttttgaactttgtc----ttcgtgacagtcatagtaacagc-----tgacatttatgttctgtgagg----ttatgtttaagttga--gcatcatggcttagct------------------------------------------ggtaggatcaggccaattcccagttgtcaggggccgtctttctTAAAAGTGAACATGTGAATAATTACAGGTTGTGATTAATGATATTAAGGAAGTAAATGAGGGGTACTCTATAGAGAGTAATGGTTGggggcacctgggtggctcagtggttgagtgc
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e saiBol1.JH378327           110310  14 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58063   8 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I

a score=21268.000000
s hg38.chr6_GL000254v2_alt  1910249 6 +   4827813 -ggtagg
s panTro5.chr6             30755934 6 + 175400573 -ggtagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31179551 6 + 173848474 -ggtagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     686537 6 +   2037526 -ggtagg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75355020 6 + 122973662 -ggtggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31266529 6 + 172585720 -agtggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30555620 6 - 170955103 -agtggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     851897 6 +   1495729 -agtggc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      75013 6 -    811324 -agtggc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30105888 6 -  71996105 -ggtggc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     112344 6 +    779361 -agtggc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     775422 6 -   1829203 -ggtggc
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327           110324 6 -    750284 -ggtggc
i saiBol1.JH378327         I 14 C 0
s canFam3.chr12              392689 6 +  72498081 ctttgg-
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58063 8 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I

a score=217806.000000
s hg38.chr6_GL000254v2_alt  1910255 28 +   4827813 -tcacgcctgtaatcccagtactctggga
s panTro5.chr6             30755940 28 + 175400573 -tcacgcctgtaatcccagtactctggga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31179557 28 + 173848474 -tcacgcctgtaatcccagtactctggga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     686543 28 +   2037526 -tcacgcctgtaatcccagtactctggga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75355026 28 + 122973662 -tcatgcctataatcccagcactctggga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31266535 28 + 172585720 -ttatgcctgtaatcccagcactctggga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30555626 28 - 170955103 -ttatgcctgtaatcccagcactctggga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     851903 28 +   1495729 -ttatgcctgtaatcccagcactctggga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      75019 27 -    811324 -ttatgcctgt-acaccagcactctggga
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30105894 28 -  71996105 -ttatgcctgtaatcccagcactctggga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     112350 28 +    779361 -ttatgcctgtaatcccagcactctggga
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     775428 28 -   1829203 -ttatgcctgtaatcccagcactctggga
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327           110330 28 -    750284 -tcacgcctgtaatcgcagcactctggga
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      58071 28 -    566255 -tcatgcctgtaatcacaacactctggga
i aotNan1.NW_018511496v1   I 8 C 0
s canFam3.chr12              392695 28 +  72498081 cttaggtc-gtgatcccggggtcctggga
i canFam3.chr12            C 0 I 301
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I

a score=599090.000000
s hg38.chr6_GL000254v2_alt  1910283 81 +   4827813 ggctgaggcgggtggatcgcctgaggtcaggaattcgagaccagcctggccaacatggtgaaaccctgtctctactaaaat
s panTro5.chr6             30755968 81 + 175400573 ggctgaggcgggtggatcgcctgaggtcaggaattcgagaccagcctggccaacatggtgaaaccctgtctctactaaaat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31179585 81 + 173848474 ggctgaggcgggtggatcgcctgaggtcaggaattcgagaccagcctggccaacatggtgaaaccctgtctctactaaaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     686571 81 +   2037526 ggctgaggcgggtggatcgcctgaggtcaggaattcaagaccagcctggccaacatggtgaaaccctgtctctactaaaat
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75355054 81 + 122973662 ggcagaggcgggtggatcgcctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31266563 81 + 172585720 ggctgaggcgggtagatcacctgaggtcaggagtttgagaccagcctggccaacaaggtgaaatcctgtctctactaaaat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30555654 81 - 170955103 ggatgaggcgggtagatcacctgaggtcaggagtttgagaccagcctggccaacaaggtgaaatcctgtctctactaaaat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     851931 81 +   1495729 ggctgaggcgggtagatcacctgaggtcaggagtttgagaccagcctggccaacaaggtgaaatcctgtctctactaaaat
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      75046 78 -    811324 ggctgaggcgggtag-tcacgtgaggtcaggag-ttgagaccagcctggccaacatggtaaaatcctgtctctact-aaat
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30105922 81 -  71996105 ggctgaggcgggtagatcacctgaagtcaggagtttgagaccagcctggccaacatggtgatatcctgtctctactaaaat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     112378 81 +    779361 ggctgaggcgggtagatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaatcctgtctctactaaaat
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     775456 81 -   1829203 ggctgaggcgggtagatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaatcctgtctctactaaaat
i colAng1.NW_012115577v1   C 0 I 32
s saiBol1.JH378327           110358 80 -    750284 ggccaaggcgggcagatcacctgaggtcaggagttcaagcccagcctagccaacatggtgaaaccccatctcta-taaaat
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      58099 80 -    566255 ggccaaggcgggcagatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctcta-taaaat
i aotNan1.NW_018511496v1   C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              392723 301 +  72498081 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I

a score=109894.000000
s hg38.chr6_GL000254v2_alt  1910364 37 +   4827813 aacaacaactagcgaggcgtggtggtgggcatttata
s panTro5.chr6             30756049 37 + 175400573 aacaacaactagcgaggcgtggtggtgggcatttata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31179666 37 + 173848474 aacaacaactagtgaggcgtggtggtgggcatttata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     686652 37 +   2037526 aacaacaactagcgaggtgtggtggtgggcatttata
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75355135 36 + 122973662 -acaacaactagccaggcgtggtggcggtcacctata
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31266644 30 + 172585720 -acaacaattagctaggcatggtgatgg---tct---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30555735 30 - 170955103 -acaacaattagctaggcatggtgatgg---tct---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     852012 30 +   1495729 -acaacaattagctaggcatggtgatgg---tct---
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      75124 31 -    811324 -acaacaattagctgggcatggtgatgg--ttct---
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30106003 33 -  71996105 -acaacaattagctgggcatggtgatggtctcct---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     112459 33 +    779361 -acaacaattagctgggcatggtgatggtctcct---
i manLeu1.NW_012106264v1   C 0 C 0
s saiBol1.JH378327           110438 29 -    750284 --aaaaaattagctgggcatggtggtgtg--ct----
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      58179 31 -    566255 --aaaaaattagctgggcgtggtggcgtgcact----
i aotNan1.NW_018511496v1   C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              392723 301 +  72498081 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I
e colAng1.NW_012115577v1     775537 32 -   1829203 I

a score=902476.000000
s hg38.chr6_GL000254v2_alt  1910401 129 +   4827813 aataatcccagctacttgggaggctgaggcaggagaatggcttgaacccaggaagcagaggttgcagttagccgagattgcaccattgtactccaccctgggcaacagagcgagactccatatcc-----aaaa
s panTro5.chr6             30756086 130 + 175400573 aataatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaagcagaggttgcagttagccgagattgcaccattgtactccaccctgggcaacagagcgagactccatatcc----aaaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31179703 129 + 173848474 aataatcccagctacttgggaggctgaggcaggagaatggcttgaacccaggaagcagaggttgcagttagccgagattgcaccattgtactccaccctgggcaacagagcgagactccatatcc-----aaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     686689 131 +   2037526 aataatcccagctacttgggaggctgaggcaggagaatggcttgaacccaggaagcagaggttgcagttagctgagattgcaccattgtactccaccctgggcaacagagcgagactccatatcc---aaaaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75355171 130 + 122973662 aataaccccagctacttcggaggctgaggcaggagaatggcttgaacccaggaagcagaggttgctgttagccaagattgcaccgttgcactccaccctgggcaacagagcgacactccatctcc----aaaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31266674 130 + 172585720 -ataatcccagctacttgggaggctgaggcaggagaatgacttgaacccaggaagcagaggttgcagttagccgagatcgcaccattgcactccaccctgggtgacagagggagactccatctcc---aaaaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30555765 130 - 170955103 -ataatcccagctacttgggaggctgaggcaggagaatgacttgaacccaggaagcagaggttgcagttagccgagatcgcaccattgcactccaccctgggtgacagagggagactccatctcc---aaaaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     852042 133 +   1495729 -ataatcccagctacttgggaggctgaggcaggagaatgacttgaacccaggaagcagaggttgcagttagccgagatcgcaccattgcactccaccctgggtgacagagggagactccatctccaaaaaaaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      75155 126 -    811324 -ataatcccagctac-tgggaggctgaggcaggagaatgacttgaacccaggaagcagaggttgcagttag-cgaggtcacacc-ttgcactctaccctgggtgacaga-ggagactccatctcc---aaaaaa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30106036 127 -  71996105 -ataatcccagctacttgggaggctgaggcaggagaatgacttgaacccaggaagcagaggttgcagttagccgaggtcgcaccattgcactccaccctgggtgacagagggagactccatttcc------aaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     112492 128 +    779361 -ataatcccagctacttgggaggctgaggcaggagaatgacttgaacccaggaagcagaggttgcagttagctgagatcgcaccattgcactctaccctgggtgacagagggagactccatctcc-----aaaa
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     775569 132 -   1829203 aataatcccagctacttgggaggctgaggcaggagaatgacttgaacgcaggaagcagaggttgcagttagccgagatcacaccaatgcactccaccctgggtgacagagggagactccatctcc--aaaaaaa
i colAng1.NW_012115577v1   I 32 C 0
s saiBol1.JH378327           110467 129 -    750284 -ataatcctagccactcgggaggctgaggcaggaaaatcacttgaatccaggaggcagaagttgcagtgagctaatatcgtgcagtt-cactccagcctgggcgacagaatgagactccatctcc---agaaag
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      58210 129 -    566255 -ataatcctagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagctaatatcgtgcagtt-cactccagcctgggcaacagaatgagactccatctcc---agaaaa
i aotNan1.NW_018511496v1   C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              392723 301 +  72498081 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I

a score=1231487.000000
s hg38.chr6_GL000254v2_alt  1910530 158 +   4827813 aaaaaaaaGACATGGTGGCTAGGATAGACCTCTCTGA--------GGAATCTGT------------AGATGA----------------------agg-----------------------------gcccagaacttagccttgaggaactctgacattgaattgctaagtgaagaagg---------acaaggat-------------------------------------------------aagccagacaaggagactaagg-agggatgac--ggagaggcagg-
s panTro5.chr6             30756216 158 + 175400573 aaaaaaaaGACATGGTGGCTAGGATAGACCTCTCTGA--------GGAATCTGT------------AGATGA----------------------agg-----------------------------gcccagaacttagccttgaggaactctgacattgaattgctaagtgaagaagg---------acaaggat-------------------------------------------------aagccagacaaggagactaagg-agggatgat--ggagaggcagg-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31179832 158 + 173848474 aaaaaaaaGACATGGTGGCTAGGATAGACCTCTCTGA--------GGAATCTGT------------AGATGA----------------------agg-----------------------------gcccagaacttagccttgaggaactctgacattgaattgctaagtgaagaagg---------acaaggat-------------------------------------------------aagccagacaaggagactaagg-agggatgac--ggagaggcagg-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     686820 158 +   2037526 aaaaaaaaGACATGGTGGCTAGGATAGACCTCTCTGA--------GGAATCTGT------------AGATGA----------------------agg-----------------------------gcccagaacttagccttgaggaactctgacattgaattgctaagtgaagaagg---------acaaggat-------------------------------------------------aagccagacaaggagactaagg-agggatgac--ggagaggcagg-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75355301 158 + 122973662 aaaaaaaaGACATGGTGGCTAGGATAGACCTCTCTGA--------GGAATCTGT------------AGATGA----------------------agg-----------------------------gcccagaacttagccttgaggaactctgacactgaatggctaagtgaagaagg---------acaaggat-------------------------------------------------aagccagacaaggagagtaagg-agggatgac--ggagaggcagg-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31266804 158 + 172585720 aaaaagaaGACATGGTGGCTAGGATAGACCTCTCTGA--------GGAATCTGT------------AGATGA----------------------agg-----------------------------gcccagaacttagccttgaggaactctgacattgaatggctaagtgaagaagg---------acaaggat-------------------------------------------------aagccagacaaggagactaagg-agagatgac--agagaggcagg-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30555895 158 - 170955103 aaaaagaaGACATGGTGGCTAGGATAGACCTCTCTGA--------GGAATCTGT------------AGATGA----------------------agg-----------------------------gcccagaacttagccttgaggaactctgacattgaatggctaagtgaagaagg---------acaaggat-------------------------------------------------aagccagacaaggagactaagg-agagatgac--agagaggcagg-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     852175 158 +   1495729 aaaaagaaGACATGGTGGCTAGGATAGACCTCTCTGA--------GGAATCTGT------------AGATGA----------------------agg-----------------------------gcccagaacgtagccttgaggaactctgacattgaatggctaagtgaagaagg---------acaaggat-------------------------------------------------aagccagacaaggagactaagg-agagatgac--agagaggcagg-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      75281 157 -    811324 aaaaaaaaGACATGGTGGCTAGGATAGACCTCTCTGA--------GGAATCtgt------------agatga----------------------agg-----------------------------ggccaga--cttgccttgaggaactctgacattgaatggctaagtgaagaagg---------acaaggat-------------------------------------------------aagccagacaaggagactaaggaagagatgac--agagaggcggg-
i cerAty1.NW_012002513v1   C 0 I 29
s chlSab2.chr17            30106163 187 -  71996105 aaaaaaaaGACATGGTGGCTAGGATAGACCTCTCTGA--------GGAATCTGT------------AGATGA----------------------AGGAATCTGTAGATGATAGACCTCTCTGAGGAATCCAGAACTTAGCCTTGAGGAACTCTGACATTGAATGGCTAAGTGAAGAAGG---------ACAAGGAT-------------------------------------------------AAGCCAGACAAAGAGAATAAGG-AGGGATGAC--AGAGAGGCAGG-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     112620 158 +    779361 aaaaaaaaGACATGGTGGCTAGGATAGACCTCTCTGA--------GGAATCTGT------------AGATGA----------------------agg-----------------------------gcccagaacttagccttgaggaactctgacattgaatggctaagtgaagaagg---------acaaggat-------------------------------------------------aagccagacaaggagactaagg-agagatgac--agagaggcagg-
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     775701 158 -   1829203 aaaaaaaaGACATGGTGGCTAGGATAGACCTCTCTGA--------GGAATCTGT------------AGATGA----------------------agg-----------------------------gcccagaacttagccttgaggaactctgacattgaatggctaagtgaggaagg---------acaaggat-------------------------------------------------aagccagacaaggagactaagg-agggatgac--agagaggcagg-
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327           110596 164 -    750284 aaaaaaaaaaGAC-GTGGCTAGGATAGACCTCTCTGAGGAATCTGGGAATCTGT------------agatga----------------------aag-----------------------------gcccaggacttagccttgaggaactctgatgttgaatggctgagtgaagaacg---------ac-atgat-------------------------------------------------aagccagacaaggaaaccaagg-aaggatgac--ggagaagcagg-
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      58339 164 -    566255 aaaaaaaaGACAT-GTGGCTAGGATACACCTCTCTGAGGAATCTGGGAATCTGT------------agatg-----------------------aag-----------------------------gcctaggacttagccttgagaaactctgatgttgaatgactgagtgaagaagg---------acaaggat-------------------------------------------------aagccagacaagggaaccaagg-aaggatgat--ggagagacagg-
i aotNan1.NW_018511496v1   C 0 C 0
s canFam3.chr12              393024 249 +  72498081 AAAAAAAAAAAGTGGTGGTTGGGATAGAA--CTCTAA--------GGAATCTGCtgaaaccacataagaggagaatgtcaagtggaaagaagagagg-----------------------------gcccagta--tagccttgaggagggctgacatttagtggccaagtacaaaaggatgaaaccaacaaggagactaaggaggTTGGCAAATCGAACTCCAATAAAAATAACAAAAAATCAAAAGAGAGAGAGAGAGACTGAGG-AGGGATGGCCAGAGGAGGTTGGG
i canFam3.chr12            I 301 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I

a score=179737.000000
s hg38.chr6_GL000254v2_alt  1910688 28 +   4827813 gagagatctcagagtgtggcgtc-acctg
s panTro5.chr6             30756374 28 + 175400573 gagagatctcagagtgtggggtc-acctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31179990 28 + 173848474 gagagatctcagagtgtggggtc-acctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     686978 28 +   2037526 gagagatctcagagtgtggcgtc-acctg
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75355459 28 + 122973662 gagagatctcagagtatggcatc-acctg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31266962 28 + 172585720 gagagatcttagagtatggcatc-acctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30556053 28 - 170955103 gagagatcttagagtatggcatc-acctg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     852333 28 +   1495729 gagagatcttagagtatggcatc-acctg
i macNem1.NW_012012100v1   C 0 C 0
s chlSab2.chr17            30106350 28 -  71996105 GAGAGATCTTAGAGTATGGCATC-ACCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     112778 28 +    779361 gagagatcttagagtatggcatc-acctg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     775859 29 -   1829203 gaaagatcttagagtatgacatcAACCTG
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327           110760 28 -    750284 gagagatctcagagtagggcact-gcctg
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      58503 28 -    566255 gagagatctcagagtagggcatt-gcctg
i aotNan1.NW_018511496v1   C 0 C 0
s canFam3.chr12              393273 28 +  72498081 GGGATATCTCAGAGTGTAAGATC-TTTCC
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I
e cerAty1.NW_012002513v1      75438 29 -    811324 I

a score=309686.000000
s hg38.chr6_GL000254v2_alt  1910716 38 +   4827813 gCTgcttgctcagtgccaggtac-cctg-ctaagc-tcttt
s panTro5.chr6             30756402 38 + 175400573 gCTgcttgctcagtgccaggtac-cctg-ctaagc-tcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31180018 38 + 173848474 gCTgcttgctcagtgccaggtac-cctg-ctaagc-tcttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     687006 38 +   2037526 gCTgcttactcagtgccaggtac-cctg-ctaagc-tcttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75355487 38 + 122973662 gCTgcttgctcagtgccaggtac-cctg-ctaagc-tcttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31266990 38 + 172585720 gCTgcttgctcagtgccaggtac-cctg-ctaagc-tcttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30556081 38 - 170955103 gCTgcttgctcagtgccaggtac-cctg-ctaagc-tcttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     852361 38 +   1495729 gCTgcttgctcagtgccaggtac-cctg-ctaagc-tcttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      75467 41 -    811324 GCTGCTTGCTCAGTGCCAGGTACACCTGTCTAGGCTTCTTT
i cerAty1.NW_012002513v1   I 29 C 0
s chlSab2.chr17            30106378 38 -  71996105 GCTgcttgctcagtgccaggtac-cctg-ctaagc-tcttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     112806 38 +    779361 gCTgcttgctcagtgccaggtac-cctg-ctaagc-tcttt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     775888 38 -   1829203 GCTgcttgctcagtgccaggtac-cctg-ctaagc-tcttt
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327           110788 38 -    750284 gCTgcttcctctgtgccaggcac-cctg-ctaagc-tcttc
i saiBol1.JH378327         C 0 C 0
s aotNan1.NW_018511496v1      58531 38 -    566255 gctgcttcctctgtgccaggcac-cctg-caaagc-tcttt
i aotNan1.NW_018511496v1   C 0 I 2832
s canFam3.chr12              393301 32 +  72498081 ----ATTGTTCTGTGCAAGGTAC-CATG-CTAAGT-TTT--
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I

a score=170124.000000
s hg38.chr6_GL000254v2_alt  1910754 43 +   4827813 atagacattgtctttgtcttatttaagcttcacaTACTTTT--------TT
s panTro5.chr6             30756440 43 + 175400573 atagacattgtctttgtcttatttaagcttcacatactttt--------tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31180056 43 + 173848474 atagacattgtctttgtcttatttaagcttcacatactttt--------tt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     687044 43 +   2037526 atagacattgtctttgtcttatttaagcttcacaTACTTTT--------TT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75355525 37 + 122973662 atacaca------ttgttttatttaagcttcacaTACTTTC--------TT
i nomLeu3.chr1a            C 0 I 7
s rheMac8.chr4             31267028 43 + 172585720 atagaca------ttgtcttacttaagcttcataTACTTAC--TTTTTTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30556119 43 - 170955103 atagaca------ttgtcttacttaagcttcataTACTTAC--TTTTTTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     852399 42 +   1495729 atagaca------ttgtcttacttaagcttcataTACTTAC---TTTTTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      75508 43 -    811324 ATAGACG------TTGTCTTAC-TAAGCTTCA-ATACTTTCGTTTTTTTTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30106416 43 -  71996105 atagaca------ttgtcttacttaagcttcataTACTTTC--TTTTTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     112844 44 +    779361 atagacg------ttgtcttacttaagcttcataTACTTTC-TTTTTTTTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     775926 42 -   1829203 atagaca------ttgtcttacttaagcttcacaTACTTTC---TCTCTTT
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327           110826 37 -    750284 ataggca------ctatcttatttaagcgtcacaTACTTCT--------tt
i saiBol1.JH378327         C 0 I 99
s canFam3.chr12              393333 24 +  72498081 ----------TCTATTTGTTATTTAAGTCTCAca-----------------
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I

a score=56034.000000
s hg38.chr6_GL000254v2_alt  1910797 17 +   4827813 GGGGGGGGAGAGGGGGT
s panTro5.chr6             30756483 17 + 175400573 gcggggGGAGAGGGGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31180099 17 + 173848474 gaggGGGGAGAGGGGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     687087 17 +   2037526 TGGGGGGGAGAGGGGGT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75355569 17 + 122973662 GGGGGGGGAGGGGGGGT
i nomLeu3.chr1a            I 7 C 0
s rheMac8.chr4             31267071 17 + 172585720 TTTTGGCGGGGGCGGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30556162 17 - 170955103 TTTTGGCGGGGGCGGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     852441 17 +   1495729 TTTTGGCGGGGGCGGGT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      75551 17 -    811324 TTTTGGCGGGGGCGGGT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30106459 17 -  71996105 TTTTGGCGGGGGCGGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     112888 17 +    779361 TTTTGGCGGGGGCGGGT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     775968 17 -   1829203 TTTTGGCGGGGGCGGGT
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              393357  0 +  72498081 C
e saiBol1.JH378327           110863 99 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I

a score=34836.000000
s hg38.chr6_GL000254v2_alt  1910814 6 +   4827813 ggttca
s panTro5.chr6             30756500 6 + 175400573 ggttca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31180116 6 + 173848474 ggttca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     687104 6 +   2037526 ggttca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75355586 6 + 122973662 ggctca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31267088 6 + 172585720 Cgttca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30556179 6 - 170955103 Cgttca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     852458 6 +   1495729 Cgttca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      75568 6 -    811324 CAttca
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30106476 6 -  71996105 CAttca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     112905 6 +    779361 Cgttca
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     775985 6 -   1829203 ggttca
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327           110962 6 -    750284 ggttca
i saiBol1.JH378327         I 99 C 0
s canFam3.chr12              393357 4 +  72498081 --ttca
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I

a score=686084.000000
s hg38.chr6_GL000254v2_alt  1910820 110 +   4827813 agcgattctcctgcctcagcctcccgagtagctgg-aattacaggtgcccaccacca-cacccgg---ctaattttttgtattttagtagagat-ggggtttcacca--tgttggcca
s panTro5.chr6             30756506 110 + 175400573 agcgattttcctgcctcagcctcccgagtagctgg-aattacaggtgcccaccacca-cacccgg---ctaattttttgtattttagtagagat-ggggtttcacca--tgttggcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31180122 110 + 173848474 agcgattctcctgcctcagcctcccgagtagctgg-aattacaggtgcccaccacca-cacccgg---ctaattttttgtattttagtagagat-ggggtttcacca--tgttggcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     687110 111 +   2037526 agcgattctcctgcctcagcctcccgagtagctgg-aattacaggtgcccaccacca-cacccgg---ctaattttttgtattttagtagagatgggggtttcacca--tgttggcca
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75355592 113 + 122973662 agcgattcttctgcctcagcctcccgaatagctgg-aattacaggtgcccaccatca-cacccaggacataattttttgtattttagtaaagat-ggggtttcacca--tgttggcca
i nomLeu3.chr1a            C 0 M 767
s rheMac8.chr4             31267094 109 + 172585720 agcgattctcctgcctcagcctcccaaatagctgg-aattaca-gtgcccaccacca-cacccag---ctaattttttgtattttagtagagat-ggggtttcacca--tattggcca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30556185 109 - 170955103 agcgattctcctgcctcagcctcccaaatagctgg-aattaca-gtgcccaccacca-cacccag---ctaattttttgtattttagtagagat-ggggtttcacca--tattggcca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     852464 109 +   1495729 agcgattctcctgcctcagcctcccaaatagctgg-aattaca-gtgcccaccacca-cacccag---ctaattttttgtattttagtagagat-ggggtttcacca--tattggcca
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      75574 111 -    811324 agcgattctcctgcctcagcctcccaaatagctggaaattaca-gtg-ccaccaccaccacccag---ctaa-tttttgtattttagtagagat-ggggtttcacccattattggcca
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30106482 109 -  71996105 agcgattctcctgcctcagcctcccaaatagctgg-aattaca-gcgcccaccacca-cacccag---ctaattttttatattttagtagagat-ggggtttcgcca--tgttggcca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     112911 109 +    779361 agcgattctcctgcctcagcctcccaaatagctgg-aattaca-gtgcccaccacca-cacccag---ctaattttttgtattttagtagagat-ggggtttcacca--tgttggcca
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     775991 109 -   1829203 agcgattctcctgcctcagcctcccaaattgctgg-aattaca-gtgcccaccacca-cacccag---ctaattttttgtattttagtagagat-ggggtttcacca--tgttggcca
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327           110968 109 -    750284 agtgattctcctgcctcagcctcctgagtagctgg-gattacaggcatgtgccacca-tgcccaa---ctaattttgtat-ttttagtagagat-ggggtttcacca--tgttggtca
i saiBol1.JH378327         C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              393361   0 +  72498081 C
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I

a score=561226.000000
s hg38.chr6_GL000254v2_alt  1910930 104 +   4827813 ggccggtctcgaactcctgacctcaggtga--tctacctgcctcggcctcccaaagtgctgggattataggcatgagccaccgcacctggccAAGCTTTGcatact
s panTro5.chr6             30756616 104 + 175400573 ggccggtctcgaactcctgacctcaggtga--tctacctgcctcggcctcccaaagtgctgggattataggcatgagccacggcacctggccAAGCTTTGcatact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31180232 104 + 173848474 ggccggtctcgaactcctgacctcaggtga--tctacctgcctcggcctcccaaagtgctgggattataggcatgagccacggcacctggccAAGCTTTGCATACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     687221 104 +   2037526 ggccggtctcgaactcctgacctcaggtga--tctacctgcctcggcctcccaaagtgctgggattataggcatgagccactgcacctggccAAGCTTTGcatact
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31267203 104 + 172585720 ggctggtctcgaactcctgaccttagatga--tctacctgcttcggcctcccaaagtgctgggattataggcatgagccactgtacctggccAAGCTTTGcatact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30556294 104 - 170955103 ggctggtctcgaactcctgaccttagatga--tctacctgcttcggcctcccaaagtgctgggattataggcatgagccactgtacctggccAAGCTTTGcatact
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     852573 104 +   1495729 ggctggtctcgaactcctgactttagatga--tctacctgcttcggcctcccaaagtgctgggattataggcatgagccactgtacctggccAAGCTTTGcatact
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      75685 103 -    811324 ggctggtctcgaactcctg-ccttagatggatcttacctgcttcgg-ctcccaaagtgctggga-tataggcatgagccactgtacctggGCAAGCTTTTGCAACT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30106591 104 -  71996105 ggctggtctcgaactcctgaccttagatga--tctacctgcttcggcctcccaaagtgctgggattataggcatgagccactgtacctggccAAGCTTTGcatact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     113020 104 +    779361 ggctggtctcgaactcctgaccttagatga--tctacctgcttcggcctcccaaagtgctgggattataggcatgagccactgtacctggccAAGCTTTGcatact
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     776100 104 -   1829203 ggccggtcttgaactcctgacctcagatga--tctacctgcttcagcctcccaaagtgctgggattataggcatgagccactgcacctggccAAGCTTTGcatact
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327           111077  96 -    750284 agctggtctcgaactcctgacctcaggtga--tccacccgcatcggcctcccaaagtgctgggattacaggcatgagccaccgcgcccagcc--------CATACT
i saiBol1.JH378327         C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              393361   0 +  72498081 C
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I
e nomLeu3.chr1a            75355705 767 + 122973662 M

a score=21996.000000
s hg38.chr6_GL000254v2_alt  1911034 3 +   4827813 ttc
s panTro5.chr6             30756720 3 + 175400573 ttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31180336 3 + 173848474 TTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     687325 3 +   2037526 ttc
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31267307 3 + 172585720 ttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30556398 3 - 170955103 ttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     852677 3 +   1495729 ttc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      75788 3 -    811324 ttc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30106695 3 -  71996105 ttc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     113124 3 +    779361 ttc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     776204 3 -   1829203 ttc
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327           111173 3 -    750284 TTC
i saiBol1.JH378327         C 0 I 2510
s canFam3.chr12              393361 3 +  72498081 ttc
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I
e nomLeu3.chr1a            75355705 767 + 122973662 M

a score=1317323.000000
s hg38.chr6_GL000254v2_alt  1911037 270 +   4827813 agtgaacactttagtgcctactgtagggcaagcactg-ttttaggagctggag--ctacatcaataaaaaggacaaaatccctgcccatatggagcttac--attgctttga-ggatgatagacaatatacataggtaatataattttaagtaatagtaaatgcttcaaatgaaaataaagtgaaaaaagaggtt--agagagtgaca-ggtggaagagaacaggttgatacaaaga-gagagctgctttgaggaggtaaca-cata-gagagaaaattaaa
s panTro5.chr6             30756723 270 + 175400573 agtgaacactttagtgcctactgtagggcaagcactg-ttttaggagctggag--ctacatcaataaaaaggacaaaatccctgcccatatggagcttac--attgctttga-ggatgatagacaatatacataggtaatataattttaagtaatagtaaatgcttcaaatgaaaataaagtgaaaaaagaggtt--agagagtgaca-ggtagaagagaacaggttgatacaaaga-gagagctgctttgaggaggtaaca-caca-gagagaaaattaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31180339 270 + 173848474 AGTGAGCACtttagtgcctactgtagggcaagcactg-ttttaggagctggag--ctacatcaataaaaaggacaaaatccctgcccatatggagcttac--attgctttga-ggatgatagacaatatacataggtaatataattttaagtaatagtaaatgcttcaaatgaaaataaagtgaaagaagaggtt--agagagtgaca-ggtagaagagaacaggttgatacaaaga-gagagctgctttgaggaggtaaca-cata-gagagaaaattaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     687328 270 +   2037526 agtgaacattttagtgcctactgtagggcaagcactg-ttttaggagctggag--ctacatcaataaaaaggacaaaatccctgcccatatggagcttac--attgctttga-ggatgatagacaatatacataggtaatataattttaagtaatagtaaatgcttcaaatgaaaataaagtgaaaaaagaggtt--agagagtgaca-ggtagaagagaacaggttgatacaaaga-gagagctgctttgaggaggtaaca-cata-gagagaaaattaaa
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31267310 272 + 172585720 aatgaacactttagtgcctagtgtagagcaagcactg-ttttaggagctggag--atacatcaataaaaaggacaaaatccttgcccatatggagcttacatattgctttga-gggtgacagacaatatacataggtagtataattttaagtaatagtaagtgctccaaatgaaaataaaatgaaaaaagaggtt--agagagtgaca-gggggaagagaacaggtagatacaaaga-gagagctgctttgaggaggtaaca-caga-gagagaaaattaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30556401 272 - 170955103 aatgaacactttagtgcctagtgtagagcaagcactg-ttttaggagctggag--atacatcaataaaaaggacaaaatccttgcccatatggagcttacatattgctttga-gggtgacagacaatatacataggtagtataattttaagtaatagtaagtgctccaaatgaaaataaaatgaaaaaagaggtt--agagagtgaca-gggggaagagaacaggtagatacaaaga-gagagctgctttgaggaggtaaca-caga-gagagaaaattaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     852680 272 +   1495729 aatgaacactttagtgcctagtgtagagcaagcactg-ttttaggagctggag--atacatcaataaaaaggacaaaatccttgcccatatggagcttacatattgctttga-gggtgacagacaatatacataggtagtataattttaagtaatagtaagtgctccaaatgaaaataaaatgaaaaaagaggtt--agagagtgaca-gggggaagagaacaggtagatacaaaga-gagagctgctttgaggaggtaaca-caga-gagagaaaattaaa
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      75791 274 -    811324 aatgaacactttagtgcctagtgtagagcaagcactgtttttaggagctggag--atacatcaataaaaagggacaaatctcttgccatatgg-gcttacatattgctttgaggggtgacaggacatatacataggtagtataattttaagtaatagtaagtgctccaaatgaaaat-aaatgaaaaaagaggtt--agagagtgaca-gggggaagagaacaggtagatacaaagaggagagctgctttgaggaggtaacatcagatgagagaaaatt-aa
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30106698 273 -  71996105 aatgaacactttagtgcctagtgtagagcaagcactg-ttttaggagctggag--atacatcaataaaaaggacaaaatccttgcccatatggagcttacatattgctttga-gggtgatagacaatatacataggtagtataattttaagtaatagtaagtgctccaaatgaaaataaaatgaaaaaagagatt--agagagtgacaggggggaagagaacaggtagatacaaaga-gagagctgctttgaggaggtaaca-caga-gagagaaaattaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     113127 272 +    779361 aatgaacactttagtgcctagtgtagagcaagcactg-ttttaggagctggag--atacatcaataaaaaggacaaaatctttgcccatatggagcttacatattgctttga-gggtgacagacaatatacataggtagtataattttaagtaatagtaagtgctccaaatgaaaataaaatgaaaaaagaggtt--agagagtgaca-gggggaagagaacaggtagatacaaagc-gagagctgctttgaggaggtaaca-caga-gagagaaaattaaa
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     776207 272 -   1829203 aatgaacactttagtgcctagtgtagggcaagcagtg-ttttaggagctggagatatacatcaataaaaaggacaaaatccttgcccatatggagcttacatattgctttga-gggtgatagacaatatacataggtaatataattttaagtaat----agtgctccaaatgaaaataaagtgaaaaaagaggttagagagagtgaca-gagggaagagaacaggtggatacaaaga-gagagctgctttgaggaggtaaca-caga-gagagaaaattaaa
i colAng1.NW_012115577v1   C 0 C 0
s canFam3.chr12              393364 241 +  72498081 aataaatatttt------------------agcacta--tttaggggccagaa--atgtaataaagagaaagat-aaatccctgcccctatggtgcttat--aatctgttga-ggataatagacaataagtat--gtactataaacttaagtaat---acgtgctctaaagaaaaaga----gaaggaagaggct--ggagagtgaca-ggtggaagacaatagatcagtattacaa-tatggcttcattgaggaggtaaga-tatc-aataaaggctgaaA
i canFam3.chr12            C 0 I 1428
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e saiBol1.JH378327           111176 2510 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I
e nomLeu3.chr1a            75355705 767 + 122973662 M

a score=2352425.000000
s hg38.chr6_GL000254v2_alt  1911307 482 +   4827813 cgagggaacaa-accatatgaacacacagagaaagtgcgttccaggcacagggaacagcaaaggc--aaaggccttgatgcaggaatgactctggggtgtttgaagtaaaaatagaaggccaggccaggcgtggtggttcatgcctgcagtcccagcactctcagaggctgaggcaggagcactgcttgagctcagaagtttgagaccagcctgggcaacatggtgagaccctgtgtctgcaaaaatgtttaaaaagtacccaggcctggtggcgtgtgcctgtagtcctagctagttggaggctgaggtgggaggatcctttgaggttgcagtgagctatgattataccactacactccagcttgaatgacagaccaagatcctggttc---aaaaaaaaaaaaaaaagcccagtgtggctagactgtgggagatgggatcaagatgtttaacagagggcatattgtacagagccctataaactatg
s panTro5.chr6             30756993 485 + 175400573 caagggaacaa-accatatgaacacacagagaaagtgcgttccaggcacagggaacagcaaaggc--aaaggccttgatgcaggaatgactctggggtgtttgaagtaaaaatagaaggccaggccaggcgtggtggttcatgcctgcagtcccagcactttcggaggctgaggcaggagcactgcttgagctcagaagtttgagaccagcctgggcaacatggtgagaccctgtctctgcaaaaatgtttaaaaagtacccaggcctggtggcgtgtgcctgtagtcctagctagttggaggctgaggtgggaggatcctttgaggttgcagtgagctatgattataccactacactccagcttgaatgacagaccaagatcctggttcaaaaaaaaaaaaaaaaaaagcccagtgtggctagactgtgggagatgggatcaagatgtttaacagagggcatattgtacagagccctataaactatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31180609 482 + 173848474 caagggaacaa-accatatgaacacacagagaaagtgcgttccaggcacagggaacagcaaaggc--aaaggccttgatgcaggaatgactctggggtgtttgaagtaaaaatagaaggccaggccaggcgtggtggttcatgcctgcagtcccagcactttcggaggctgaggcaggagcactgcttgagctcagaagtttgagaccagcctgggcaacatggtgagaccctgtctctgcaaaaatgtttaaaaagtacccaggcctggtggcgtgtgcctgtagtcctagctagttggaggctgaggtgggaggatcctttgaggttgcagtgagctatgattataccactacactccagcttgaatgacagaccaagatcctggtta---caaaaaaaaaaaaaaagcccagtgtggctagactgtgggagatgggatcaagatgtttaacagagggcatattgtacagagccctataaactatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     687598 480 +   2037526 cgagggaacaa-accatatgaacacacagagaaagtgcgttccaggcacagggaacagcaaaggc--aaaggccttgatgcaggaatgactctggggtgtttgaagtaaaaatagaaggccaggccaggcgtggtggttcattcctgcagtcccagcactttcggaggctgaggcaggagcactgcttgagctcagaagtttgagaccagcctgggcaacatggtgagaccctgactctgcaaaaatgtttaaaaagtacccaggcctggtggcgtgtgcctgtagtcctagctagttggaggctgaggtgggaggatcctttgaggttgcagtgagctatgattataccactacactccagcttgaatgacagaccaagatcctggttc-----aaaaaaaaaaaaaagcccagtgtggctagactgtgggagatgggatcaagatgtttaacagagggcatattgtacagagccctataaactatg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31267582 481 + 172585720 cgagggaacaa-accatatgaacacacggagaaagtgcattccagacacagggaacagcaaaggc--aaaggccttgatgcaggaatgactttggggtgtttgaagtaaaaacagaaggccaggccagacgtggtggctcatgcctgcaatcccagcactttgggaggctgaggcaggagcactacttgagcccagaagttcgagaccagtctgggcaacatggtgagaccctgtctctgcaaaaatgtttaaaaagtacccaggcctggtgtcatgtgcctgtagtcctagctagttggaggctgaggtgggaagatcctttgaggctgcagtgagctatgattataccactacactccagcttgaatgacagaccaagatcccggctc----aaaaaaaaaaaaaaagcccactgtggctagactgtgggagatgggatcaagatgtttaacagagggcatattgtacagagccccataagctatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30556673 481 - 170955103 cgagggaacaa-accatatgaacacacggagaaagtgcattccagacacagggaacagcaaaggc--aaaggccttgatgcaggaatgactttggggtgtttgaagtaaaaacagaaggccaggccagacgtggtggctcatgcctgcaatcccagcactttgggaggctgaggcaggagcactacttgagcccagaagttcgagaccagtctgggcaacatggtgagaccctgtctctgcaaaaatgtttaaaaagtacccaggcctggtgtcatgtgcctgtagtcctagctagttggaggctgaggtgggaagatcctttgaggctgcagtgagctatgattataccactacactccagcttgaatgacagaccaagatcccggctc----aaaaaaaaaaaaaaagcccactgtggctagactgtgggagatgggatcaagatgtttaacagagggcatattgtacagagccccataagctatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     852952 483 +   1495729 cgagggaacaa-accatatgaacacacggagaaagtgcattccagacacagggaacagcaaaggc--aaaggccttgatgcaggaatgactttggggtgtttgaagtaaaaacagaaggccaggccagacgtggtggctcatgcctgcaatcccagcactttgggaggctgaggcaggagcactacttgagcccagaagttcgagaccagtctgggcaacatggtgagaccctgtctctgcaaaaatgtttaaaaagtacccaggcctggtgtcatgtgcctgtagtcctagctagttggaggctgaggtgggaagatcctttgaggctgcagtgagctatgattataccactacactccagcttgaatgacagaccaagatcccggctc--aaaaaaaaaaaaaaaaagcccagtgtggctagactgtgggagatgggatcaagatgtttaacagagggcatattgtacagagccccataagctaTG
i macNem1.NW_012012100v1   C 0 I 993
s cerAty1.NW_012002513v1      76065 481 -    811324 cgagtggccaacaccata-gaacacacggagaaagtgcattcatga-aca-ggaacagcaaaggccaaaaggccttgatgcaggaatgactttggggtgtttgaagtaaaaacagaaggccaggccagacgtggtggctcatgcctgcaatcccagcactttgggaggctgaggcaggagcactacttgagcccagaagttcgagaccagtctgggcaacatggtgagaccctgtctctgcaaaaatgtttaaaaagtacccaggcctggtggcatgtgcctgtagtcctagctagttggaggctgaggtgggaggatcctttgaggctgcagtgagctacgattataccactacactccagcttgaatgacagaccaagatcccggctc----aaaaaaaaaaaaaaagcccagtgtggctagactgtgggagatgggatcaagatgtttaacagagggcatactgtacagagccccataagctatg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30106971 479 -  71996105 cgagggaacaa-accatatgaacacacggagaaagtgcattctagacacagggaacagcaaaggc--aaaggccttgatgcaggaatgactttggggtgtttgaagtaaaaacagaaggccaggccaggcgtggtggctcatgcctgcaatcccagcactttgggaggctgaggcaggagcactacttgagcccagaagttcgagatcagtctgggcaacatggtgagaccctatctctgcaaaaatgtttaaaaagtacccaggcctggtggcatgtgcctgtagtcctagctagttggaggctgaggtgggaggatcctttgaggctgcagtgagctatgattataccactacactccagcttgaatgacagaccaagatcccggctc------aaaaaaaaaaaaagcccagtgtggctagactgtgggagatgggatcaagatgtttaacagagggcatattgtacagagccccataagctatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     113399 483 +    779361 cgagggaccaa-accatatgaacacacggagaaagtgcattccagacacagggaacagcaaaggc--aaaggccttgatgcagaaatgactttggggtgtttgaagtaaaaacagaaggccaggccagacgtggtggctcatgcctgcaatcccagcactttgggaggctgaggcaggagcactacttgagcccagaagttcgagaccagtctgggcaacatggtgagaccctgtctctgcaaaaatgtttaaaaagtacccaggcctggtggcatgtgcctgtagtcctagctagttggaggctgaggtgggaggatcctttgaggctgcagtgagctatgattataccactacactccagcttgaatgacagaccaagatcccggctc--aaaaaaaaaaaaaaaaagcccagtgtggctagactgtgggagatgggatcaagatgtttaacagagggcatattgtacagagccccataagctatg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     776479 479 -   1829203 tgagggaacaa-accatatgaacacacggagaaagtgcattccagacacagggaacagcaaaggc--aaaggtcttgatgcaggaatgactttggggtgtttgaagtaaaaacagaaggccaggccaggcgtggtggctcatgcctgcaatcccagcactttgggaggctgaggcaggagcactacttgagcccagaagttcgagaccagtctgggcaacatggtgagaccctgtctctgcaaaaatgtttaaaaagtacccaggcctggtggcatgtgcctgtagtcctagctagttggaggctgaggtaggaggatcctttgaggctgcagtgagctatgattataccaccacactccagcttgaatgacagaccaagatcctggctc------aaaaaaaaaaaaagcccagtatggctagactgtgggagatgggatcaagatgtttaacagagggcatattgtacagagccccataagctatg
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              393605 1428 +  72498081 I
e saiBol1.JH378327           111176 2510 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I
e nomLeu3.chr1a            75355705 767 + 122973662 M

a score=255212.000000
s hg38.chr6_GL000254v2_alt  1911789 71 +   4827813 gtaaagcatttggattttattctggattttatac----ttttttaaatatttttatactttgaacaaatggattt
s panTro5.chr6             30757478 71 + 175400573 gtaaagcatttggattttattctggattttatac----ttttttaaatacttttatactttgaacaaatggattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31181091 71 + 173848474 gtaaagcatttggattttattctggattttatac----tttttaaaatacttttatactttgaacaaatggattt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     688078 71 +   2037526 gtaaagcatttggattttattctggattttatac----ttttttaaatacttttatactttgaacaaatggattt
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31268063 74 + 172585720 gtaaagcatttggattttattctggatTTTATGC-TTTTTTTTTTAATACTTTTATACTTTGAACAAATGGATTT
i rheMac8.chr4             C 0 I 26
s macFas5.chr4             30557154 71 - 170955103 gtaaagcatttggattttattctggattttatgc-ttttttttttaatacttttatactttgaacaaatgga---
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      76546 71 -    811324 gtaaagcatttggattttattctggattttatgc----tttttttaatacttttatactttgaacaaatggattt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30107450 72 -  71996105 gtaaagcatttggattttattctggattttatgc---tttttctaaatacttttatactttgaacaaatggattt
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012106264v1     113882 72 +    779361 gtaaagcatttggattttattctggatTTTATACTTTTTTTTTTTAATACTTTTATACTTTGAACAAATGGA---
i manLeu1.NW_012106264v1   C 0 I 2
s colAng1.NW_012115577v1     776958 71 -   1829203 gtaaagcatttggattttattctAGATTTTATGC----TTTTTTTAATACTTTTATATTTTGAACAAATGGAAtt
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              393605 1428 +  72498081 I
e saiBol1.JH378327           111176 2510 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I
e macNem1.NW_012012100v1     853435 993 +   1495729 I
e nomLeu3.chr1a            75355705 767 + 122973662 M

a score=30944.000000
s hg38.chr6_GL000254v2_alt  1911860 20 +   4827813 actttttttttttttctttt--
s panTro5.chr6             30757549 19 + 175400573 ac-ttttttttttttctttt--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31181162 17 + 173848474 ac---ttttttttttctttt--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     688149 20 +   2037526 actttttttttttttctttt--
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             30557225 15 - 170955103 -------ttttttttttttttt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      76617 17 -    811324 -----ttttttttttttttttt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30107525 20 -  71996105 --tttttttttttttttttttt
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012106264v1     113956 20 +    779361 --tttttttttttttttttttt
i manLeu1.NW_012106264v1   I 2 C 0
s colAng1.NW_012115577v1     777029 20 -   1829203 --tttttttttttttttttttt
i colAng1.NW_012115577v1   C 0 M 860
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              393605 1428 +  72498081 I
e saiBol1.JH378327           111176 2510 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I
e macNem1.NW_012012100v1     853435 993 +   1495729 I
e rheMac8.chr4             31268137 26 + 172585720 I
e nomLeu3.chr1a            75355705 767 + 122973662 M

a score=97276.000000
s hg38.chr6_GL000254v2_alt  1911880 45 +   4827813 tgagacggagtcttgctccatcacccaggttggagtgcagtggca
s panTro5.chr6             30757568 45 + 175400573 tgagacagagtcttgctccatcacccaggttggagtgcagtggca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31181179 45 + 173848474 tgagacagagtcttgctccatcacccaggttggagtgcagtggca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     688169 45 +   2037526 tgagacggagtcttgctccatcacccaggttggagtgcagtggca
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             30557240 45 - 170955103 tgagacggagtctcactgtgtcacccaggctggagtgcagtggtg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      76634 45 -    811324 tgagacggagtctcactgtgtcacccaggctggagtgcagtggtg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30107545 45 -  71996105 tgagacggagtctcactgtgtcacccaggctggagtgcagtggtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     113976 45 +    779361 tgagacggagtctcctcctgtcacccagcctggggtgcagtggca
i manLeu1.NW_012106264v1   C 0 I 198
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              393605 1428 +  72498081 I
e saiBol1.JH378327           111176 2510 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I
e colAng1.NW_012115577v1     777049 860 -   1829203 M
e macNem1.NW_012012100v1     853435 993 +   1495729 I
e rheMac8.chr4             31268137 26 + 172585720 I
e nomLeu3.chr1a            75355705 767 + 122973662 M

a score=142959.000000
s hg38.chr6_GL000254v2_alt  1911925 57 +   4827813 tgatctcagctcactgcaacctccacctcccgggttcaagtgattctcctgcctcag
s panTro5.chr6             30757613 57 + 175400573 tgatctcagctcactgcaacctccacctcccgagttcaagtgattctcctgcctcag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31181224 57 + 173848474 tgatctcagctcactgcaacctccacctcccgggttcaagtgattctcctgcctcag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     688214 57 +   2037526 tgatctcagctcactgcaacctccacctcccgggttcaagtgattctcctgcctcag
i gorGor5.CYUI01015528v1   C 0 C 0
s macFas5.chr4             30557285 57 - 170955103 tgatcttggctcactgcaacctccacctcccaggttccagtgattctcctgcctcag
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      76679 57 -    811324 tgatcttggctcactgcaacctccacctcccaggttccagtgattctcctgcctcag
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30107590 57 -  71996105 tgatcttggctcactgcaacctccacctcccaggttccagtgattctcctgcctcag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     114219 57 +    779361 tgatcttggctcactgcaacctccacctcccaggttccagtgattctcctgcctcag
i manLeu1.NW_012106264v1   I 198 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              393605 1428 +  72498081 I
e saiBol1.JH378327           111176 2510 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I
e colAng1.NW_012115577v1     777049 860 -   1829203 M
e macNem1.NW_012012100v1     853435 993 +   1495729 I
e rheMac8.chr4             31268137 26 + 172585720 I
e nomLeu3.chr1a            75355705 767 + 122973662 M

a score=2813500.000000
s hg38.chr6_GL000254v2_alt  1911982 882 +   4827813 cctcccaagtagctgggactacaggcgcccaccaccacgcctggctaatttttgtatttttagtagacacagggtttcgccatgttggccagcctggtcttgaactcctgaccttttgatccgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgattggcccatggatttacattttaaaaccacctctgactgtaggtgtgaaggatagactagagaatgagaatgacagcaggcagaccagttaggaggccagcgcagtgcagtggtccagggagaagagacgatggcttggtcagggtagaggtggagagaagtggttaaatttgggttatgttttcgtctcagttgatggcaattacatctttctagttaactcaggccagaaatattggagtcatccttaattctatttgtcaaacatgacctccaatccattaacaaaacttgttggctcttttccaaaatacattcagaaaccagcccttttcacacctccactgctgtcaccctagtctgagtcaccatcacctcctaatagatctccctgcttctgtcatttctgcccattctttgctgcctgccccctcccacctcccgcccaggttgttctcagcacagcctccagagtcatccttttta-----------tttaacaatttaaaaaatgttataggccaggcatggtggctcacgcctctaatcccagcactttgggaggccgaggcaggcggatcacgaggtcaggagtccgagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaatgagccaggcatggtgacgcacgcttgtaatcccagctactcaggagactgaggcaggagaattgctt
s panTro5.chr6             30757670 882 + 175400573 cctcccaagtagctgggactacaggcgcccaccaccacgcctggctaatttttgtatttttagtagacacagggtttcgccatgttggccagcctggtcttgaactcctgaccttttgatccgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccactgcgattggcccatggatttacattttaaaactacctctgactgtaggtgtgaaggatagactagagaatgagaatgacagcaggcagaccagttaggaggccagcgcagtgcagtggtccagggagaagagacgatggcttggtcagggtagaggtggagagaagtggtcaaatttgggttatgttttAGtctcagttgatagcaattacatctttctagttaactcaggccagaaatattggagtcatccttaattctatttgtcaaacatgacctccaatccattaacaaaacttgttggctcttttccaaaatacattcagaaaccagcccttttcacacctccactgctgtcaccctagtctgagtcaccatcacctcctaatagatctccctgcttctgtcatttctgcccattctttgctgcccgccccctcccacctcccgcccaggttgttctcagcacagcctccagagtcatccttttta-----------tttaacaatttaaaaaatgttataggccaggcgtggtggctcacgcctctaatcccagcactttgggaggccgaggcaggcggatcacgaggtcaggagtccgagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaatgagccaggcatggtggcgcacgcttgtaatcccagctactcaggagactgaggcaggagaattgctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31181281 882 + 173848474 cctcccaagtagctgggactacaggcgcccaccaccacgcctggctaatttttgtatttttagtagacacagggtttcgccatgttggccagcctggtcttgaactcctgaccttttgatccgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgattggcccatggatttacattttaaaactacctctgactgtaggtgtgaaggatagactagagaatgagaatgacagcaggcagaccagttaggaggccagcgcagtgcagtggtccagggagaagagacgatggcttggtcagggtagaggtggagagaagtggtcaaatttgggttatgttttAGtctcagttgatagcaattacatctttctagttaactcaggccagaaatattggagtcatccttaattctatttgtcaaacatgacctccaatccattaacaaaacttgttggctcttttccaaaatacattcagaaaccagcccttttcacacctccactgctgtcaccctagtctgagtcaccatcacctcctaatagatctccctgcttctgtcatttctgcccattctttgctgcccgccccctcccacctcccgcccaggttgttctcagcacagcctccagagtcatccttttta-----------tttaacaatttaaaaaatgttataggccaggcgtggtggctcacgcctctaatcccagcactttgggaggccgaggcaggcggatcacgaggtcaggagtccgagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaatgagccaggcatggtggcgcacgcttgtaatcccagctactcaggagactgaggcaggagaattgctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     688271 882 +   2037526 cctcccaagtagctgggactacaggcgcccaccaccacgcctggctaatttttgtatttttagtagacacagggtttcgccatgttggccagcctggtgttgaactcctgaccttttgatccgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgattggcccatggatttacattttaaaactacctctgactgtaggtgtgaaggatagactagagaatgagaatgacagcaggcagaccagttaggaggccagtgcagtgcagtggtccagggagaagagatgatggcttggtcagggtagaggtggagagaagtggtcaaatttgggttatgttttAGtctcagttgatggcaattacatctttctagttaactcaggccagaaatattggagtcatccttaattctatttgtcaaacatgacctccaatccattaactaaacttgttggctcttttccaaaatacattcagaaaccagcctttttcacacctccacagctgtcaccctagtctgagtcaccatcacctcctaatagatctccctgcttctgtcatttctgcccattctttgctgcccgccccctcccacctcccgcccaggttgttctcagcacagcctccagagtcatccttttta-----------tttaacaatttaaaaaatgttataggccaggcgtggtggctcacgcctctaatcccagcactttgggaggccgaggcaggcagatcacgaggtcaggagtccgagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaatgagccaggcatggtggcgcacgcttgtaatcccagctactcaggagactgaggcaggagaattgctt
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31268163 886 + 172585720 cctcccaagtagctgggactgcaggcacccaccaccacgcctggctaatttttgtatttttagtagagacagggtttcaccatgttgaccagcctggtctcgaactcctgaccttttgatctgcccgcctcagcctcccaaagtgctgggattacaggcgtgagtcactgtgatcggccCATGgatttacatataaaaactacctccgactgtagatgtgaaggatagactagagaatgagaatgacagcaggcagaccagttaggaggc-----cagtgcagtggtccagggagaagagacgacggcttggtcagggtagaggtggagagaagtggtcaaatttgggttatgttttAGtctcagttgatggcaattacaactttctagttaactcaagccagaaacattggagtcatccttaattctatttgtcaaacatgacctccaatccattaacaaaacttgttggctcttttccaaaatatatt-agaaaccagccc-tttcacacctccactgctgtcactctagtctgagtcaccatcacctcctaatagatctccctgcttctgtcatttctgcccattctctgctgctcgccccctcccgccccccgcccaggttattctcagcacagtctccagagtcatcctttttatttatttattttttaacaacttaaaaaaatttataggctgggcacagtggctcacgcctctaatcccaacactttgggaggccaaggcaggtggatcacgaggtcaggagtccgagaccagcctgacaaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaggcgtggtggtgcacacttgtaattccagctactcaggagactgaggcaggagaattgctt
i rheMac8.chr4             I 26 C 0
s macFas5.chr4             30557342 886 - 170955103 cctcccaagtagctgggactgcaggcacccaccaccacgcctggctaatttttgtatttttagtagagacagggtttcaccatgttgaccagcctggtctcgaactcctgaccttttgatctgcccgcctcagcctcccaaagtgctgggattacaggcgtgagtcactgtgatcggcccatggatttacatataaaaactacctctgactgtagatgtgaaggatagactagagaatgagaatgacagcaggcagaccagttaggaggc-----cagtgcagtggtccagggagaagagacgacggcttggtcagggtagaggtggagagaagtggtcaaatttgggttatgttttAGtctcagttgatggcaattacaactttctagttaactcaagccagaaacattggagtcatccttaattctatttgtcaaacatgacctccaatccattaacaaaacttgttggctcttttccaaaatatatt-agaaaccagccc-tttcacacctccactgctgtcactctagtctgagtcaccatcacctcctaatagatctccctgcttctgtcatttctgcccattctctgctgctcgccccctcccgccccccgcccaggttattctcagcacagtctccagagtcatccttttTATTTATTTATTTTTTAACAACTTAAAAAAATTTATAggctgggcacagtggctcacgcctctaatcccaacactttgggaggccaaggcaggtggatcacgaggtcaggagtccgagaccagcctgacaaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaggcgtggtggtgcacacttgtaattccagctactcaggagactgaggcaggagaattgctt
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      76736 886 -    811324 cctcccaagtagctgggactgcaggcacccaccaccacgcctggctaatttttgtatttttagtagagacagggtttcaccatgttgaccagcctggtctcgaactcctgaccttttgatctgcccgcctcagcctcccaaagtgctgggattacaggcgtgagtcactgtgatcagcccatggatttacatataaaaactacctccgactgtagatgtgaaggatagactagagaatgagaatgacagcaggcagaccagttaggaggc-----cagtgcagtggtccagggagaagagacgacggcttggtcagggtagaggtggagagaagtggtcaaatttgggttatgttttACtctcagttgatggcaattgcaactttctagttaactcaggccagaaacattggagtcatccttaattctatttgtcaaacatgacctccaatccattaacaaaacttgttggctcttttccaaaatatatt-agaaaccagccc-tttcacacctccactgctgtcactctagtctgagtcaccatcacctcctaatagatctccctgcttctgtcatttctgcccattctctgctgctcgccccctcccgccccccgcccaggttattctcagcacagcctccagagtcatcctttttatttatttattttttaacaacttaaaaaattttataggctgggcacggtggctcacgcctctaatcccaacactttgggaggccaaggcaggtggatcacgaggtcaggagtccgagaccagcctgacaaacatggtgaaaccccgtctctactaaaaatacaaaaagtagccaggcgtggtggtgcacacttgtaattccagctactcaggagactgaggcaggagaattgctt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30107647 886 -  71996105 cctcccaagtagctgggaccgcaggcacccaccaccacgcctggccaatttttgtatttttagtagagacagggtttcaccatgttgaccagtctggtctcgaactcctgaccttttgatctgcccgcctcagcctcccaaagtgctgggattacaggcgtgagtcactgtgatcggcccatggatttacatataaaaactacctccgactgtagatgtgaaggatagactagagaatgagaatgacagcaggcagaccagttaggaggc-----cagtgcagtggtccagggagaagagacgacggctgggtcagggtagaagtggagagaagtggtcaaatttgggttatgttttAGtctcagttgatggcaattacaactttctagttaactcaggccagaaacattggagtcatccttaattctctttgtcaaacatgacctcccatccattaacaaaacttgttggctcttttccaaaatatatt-agaaaccagccc-tttcacacctccactgctgtcactctagtctgagtcaccatcacctcctaatagatctccctgcttctgtcatttctgcccattctctgctgctcgccccctcccgccccccgcccaggttattctcagcacagcctccagagtcatccttttTATTTATTTATTTTTTAACAACTTAAAAAATTTTATAggctgggcacagtggctcacgcctctaatcccaacactttgggaggccaaggcaggtggatcacgaggtcaggagtccgagaccagcctgacaaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaggcgtggtggtgcacgcttgtaatctcagctactcaggagactgaggcaggagaattgctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     114276 885 +    779361 cctcccatgtagctgggactgcaggcacccaccaccacgcctggctaatttttgtattttcagtagagacagggtttcaccatgttgaccagcctagtctcgaactcctgaccttttgatctgcccgcctcagcctcccaaagtgctgggattacaggcgtgagtcactgtgatcggccCATGGATTTACAtataaaaacta-ctccgactgtagatgtgaaggatagactagagaatgagaatgacagcaggcagaccagttaggaggc-----cagtgcagtggtccagggagaagagacgacggcttggtcagggtagaggtggagagaagtggtcaaatttgggttatgttttAGtctcagttgatggcaattacaactttctagttaactcaggccagaaacattggagtcatccttaattctatttgtcaaacatgacctccaatccattaacaaaacttgttggctcttttccaaaatatatt-agaaaccagccc-tttcacacctccactgctgtcactctagtctgagtcaccatcacctcctaatagatctccctgcttctgtcatttctgcccattctctgctgctcgccccctcccgccccccgcccaggttattctcagcacagtctccagagtcatcctttttatttatttattttttaacaacttaaaaaattttataggctgggcacggtggctcatgcctctaatcccaacactttgggaggccaaggcaggtggatcacgaggtcaggagtccgagaccagcctgacaaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaggcgtggtggtgcacgcttgtaattccagctactcaggagactgaggcaggagaattgctt
i manLeu1.NW_012106264v1   C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              393605 1428 +  72498081 I
e saiBol1.JH378327           111176 2510 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I
e colAng1.NW_012115577v1     777049 860 -   1829203 M
e macNem1.NW_012012100v1     853435 993 +   1495729 I
e nomLeu3.chr1a            75355705 767 + 122973662 M

a score=895685.000000
s hg38.chr6_GL000254v2_alt  1912864 241 +   4827813 gaacccaggaggcagaggttgcagggagccgagatcacgctactgcactccagcctgggcaacagagcaagactctgtctcaaaaaaataaaataaaataaaaattaaaaaattgtattatatacggagacaaggggtctcgctatgttgcctgggttggtcacaaacccctgggctcaggcaattctcctgcctcagcctcccaaagtactggcattacaggtgtgagccactgcacctg
s panTro5.chr6             30758552 241 + 175400573 gaacccaggaggcagcggttgcagggagccgagatcacgctactgcactccagcctgggcaacagagcaagactctgtctcaaaaaaataaaataaaataaaaattaaaaaattgtattatatacggagacaaggggtctcgctatgttgcctaggttggtcacaaacccctgggctcaggcaattctcctgcctcagcctcccaaagtactggcattacaggtgtgagtcactgcacctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31182163 241 + 173848474 gaacccaggaggcagaggttgcagggagccgagatcacgctactgcactccagcctgggcaacagagcaagactctgtctcaaaaaaataaaataaaataaaaattaaaaaattgtattatatacagagacaaggggtctcgctatgttgcctaggttggtcacaaacccctgggctcaggcaattctcctgcctcagcctcccaaagtactggcgttacaggtgtgagtcactgcacctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     689153 241 +   2037526 gaacccaggaggcagaggttgcaggaagccgagatcacgctactgcactccagcctgggcaacagagcaagactctgtctcaaaaaaataaaataaaataaaaataaaaaaattgtattatatacggagacaaggggtctcgctatgttgcctaggttggtcacaaacccctgggctcaggcaattctcctgcctcagcctcccaaagtactggcattacaggtgtgagccactgcacctg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31269049 233 + 172585720 gaacccaggaggcagagtttgcagtgggtcgaaatcacgccactgcactccagcctgggcgacagagcaagactccgtctcaa------aaagtaaaataaatattaaaaaaTTGTATTATAtac--agaccaggggtctcactatgttgcctaggttggtcacaaacccctgggctcaggcaattctcccgcctcagcctcccaaagtactggcattacaggtgtgagccactgcacctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30558228 231 - 170955103 gaacccaggaggcagagtttgcagtgggtcgaaatcacgccactgcactccagcctgggcgacagagcaagactccgtctcaa------aaagtaaaataaatattaaaaaattgtattatatac--agaccaggggtctcactatgttgcctaggttggtcacaaacccctgaactc--gtgatccgcctgcctcagcctcccaaagtgctgggagtacaggcatgagccactgcacctg
i macFas5.chr4             C 0 C 0
s cerAty1.NW_012002513v1      77622 233 -    811324 gaacccaggaggcagaggttgcagtgggccgaaatcacgccactgctctccagcctgggcgacagagcaagaccccgtctcaa------aaagtaaaataaatattaaaaaaTTGTATTATAtac--agaccaggggtctcactatgttgcctaagttggtcacaaacccctgggctcaggcaattctcccgcctcagcctcccaaagtactggcattacaggtgtgagccactgcacctg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30108533 233 -  71996105 gaacccaggaggcagaggttgcagtgggccgaaatcacgccactgcactccagcctgggcgacagagcaagactccgtctcaa------aaagtaaaataaatattaaaaaaTTGTATTATAtac--agaccaggggtctcactatgttgcctaggttggtcacaaacccctgggctcaggcaattctcccgcctcagcctcccaaagtactggcattacaggtgtgagccactgcacctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     115161 233 +    779361 gaacccaggaggcagaggttgcagtgagccgaaatcatgccactgcactccagcctgggcgacagagcaagactccgtctcaa------aaagtaaaataaatattaaaaaaTTGTATTATAtac--agaccaggggtctcactatggtgcctaggttggtcacaaacccctgggctcaggcaattctcccgcctcagcctcccaaagtactggcattataggtgtgagccactgcacctg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     777909 233 -   1829203 gaacccaggaggcagaggttgcagtgggccgaaatcacgccactgcactccagcctgggtgacagagcaagactccgtctcaa------aaagtaaaataaatattaaaaaattgtattatatac--agacaaggggtctcactatgttgcctaggttggtcacaaacccctgggctcaggcaattctcccgcctcagcctcccaaagtactggcattacaggtgtgagccactgcacctg
i colAng1.NW_012115577v1   M 860 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              393605 1428 +  72498081 I
e saiBol1.JH378327           111176 2510 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I
e macNem1.NW_012012100v1     853435 993 +   1495729 I
e nomLeu3.chr1a            75355705 767 + 122973662 M

a score=653853.000000
s hg38.chr6_GL000254v2_alt  1913105 226 +   4827813 gccaggtcatccttttatttattttat-----tttat-t--ttttttttt---ttgagacggagtctcgctctgtcgcccaacctggagtgcagtggcgggatctcggctcactgcaagctctgcctcctgggttcatgccattctcctacctcagcctccccagtagctgggactacaggcgcccgccacctcgcccagctaacttttttgtatttttagtagagatggggtttca
s panTro5.chr6             30758793 226 + 175400573 gccaggtcatccttttatttattttat-----tttat-t--atttttttt---tggagacggagtctcgctctgtcacccaacctggagtgcagtggcgggatcttggctcactgcaagctctgcctcctgggttcatgccattctcctacctcagcctccccagtagctgggactacaggcgccctccacctcgcccagctaacttttttgtatttttagtagagatggggtttca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31182404 223 + 173848474 gccAGGTCATCCttttatttattttat-----tttat-t--atttttttt-----gagacggagtctcgctctgtcacccaacctggagtgcagtggcgggatctcggctcactgcaagctctgcctcct-ggttcatgccattctcctacctcagcctccccagtagctgggactacaggcgcccgccacctcgcccagctaacttttttgtatttttagtagagatggggtttca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     689394 229 +   2037526 gccaggtcatccttttatttattttat-----tttat-t--atttttttttttttgagacggagtctcgctctgtcgcccaacctggagtgcagtggcgggatctcggctcactgcaagctctgcctcctgcgttcatgccattctcctacctcagcctccccagtagctgggactacaggcgcccgccacctcgcccagctaacttttttgtatttttagtagagatggggtttca
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31269282 234 + 172585720 gccaggtcatccttttatttattttatatatatatatatatatttttttt---ttgagacggagtctccctctgtcgcccaggctggagtgtagtggcacgatctcggctcactgcaagctctgcctcccgggttcacaccaatctcctgcctcagcctccccagtagctgggactacaggcacccgccaccacgcccggctaaattttttgtatttttagtagagacggggtttca
i rheMac8.chr4             C 0 C 0
s cerAty1.NW_012002513v1      77855 233 -    811324 gccaggtcatccttttatttattttatatatttttat-tattattttttt---ttgagacggagtctccctctgttgcccaggctggagtgtagtggcgcgatctcggctcactgcaagccctgcctcccgggttcacaccaatctcctgcctcagcctccccagtagctgggactacaggcacccgccaccacgcccggctaaattttttgtatttttagtagagacggggtttca
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30108766 232 -  71996105 gccAGGTCATCCTTTTATTTAttttatatatttttat-t-tttatttttt---ttgagacggagtctccctctgtcgcccaggctggagtgtagtggcgcgatctcggctcactgcaagctctgcctcccgggttcacaccattctcctgcctcagcctccccagtagctgggactacaggcacccgccaccacgcccggctaaaatttttgtatttttagtagagacggggtttca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     115394 232 +    779361 gccaggtcatccttttatttattttatatatttttat-t-tttatttttt---ttgagacggagtctccctctgttgcccaggctggagtgtagtggcgcgatcttggctcactggaagctctgcctcccgggttcacaccaatctcctgcctcagcctccccagtagctgggactacaggcacctgccaccacgcccggctaaattttttgtatttttagtagagacggggtttca
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     778142 226 -   1829203 gccAGGTCATCCTTttatttattttatttatttttat-t-------tttt---ttgagacagagtctccctctgtcacccaggctggagtgtagtggtgcgatctcggctcactgcaagctctgcctcccgggttcacaccattctcctgcctcagcctccccagtagctgggactataggcacccaccaccacgcctggctaaattttttgtgtttttagtagagatagggtttca
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              393605 1428 +  72498081 I
e saiBol1.JH378327           111176 2510 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I
e macNem1.NW_012012100v1     853435 993 +   1495729 I
e macFas5.chr4             30558459   0 - 170955103 C
e nomLeu3.chr1a            75355705 767 + 122973662 M

a score=331152.000000
s hg38.chr6_GL000254v2_alt  1913331 93 +   4827813 ccatgttagccaggatggtctcaatctcctgacctcgtgatccacccatctaggacttccaaagtgctggcattacaggcatgagccaccgcg
s panTro5.chr6             30759019 92 + 175400573 ccatgttagccaggatggtctcaatctcctgacctcgtgatccacccatctaggacttcc-aagtgctggcattacaggcatgagccaccgcg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31182627 93 + 173848474 ccatgttagccaggatggtctcaatctcctgacctcgtgatccacccatctaggacttccaaagtgctggcattacaggcatgagccaccgcg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     689623 93 +   2037526 ccatgttagccaggatggtctcagtctcctgacctcgtgatccacccacctaggacttccaaagtgctggcattacaggcacgagccaccgcg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31269516 93 + 172585720 ccatgttagccaggatgatctcgatctcctgaactcgtgatccgcctgcctcagcctcccaaagtgctgggagtacaggcatgagccactgca
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     854428 93 +   1495729 ccatgttagccaggatgatctcgatctcttgaactcgtgatctgcctgcctcagcctgccaaagtgctgggagtacaggcatgagccactgca
i macNem1.NW_012012100v1   I 993 C 0
s cerAty1.NW_012002513v1      78088 93 -    811324 ccatgttagccaggatggtctcgatctcctgaactcgtgatccgcctgcctcagcctcccaaagtgctgggagtacaggcatgagccaccgca
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30108998 93 -  71996105 ccatgttagccaggatggtctcgatctcctgacctcgtgatccacctgccttggcctcccaaagtgctgggagtacaggcatgatccaccgca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     115626 93 +    779361 ccatgttagccaggatggtctcgatctcctgaactcgtgatccgcctgcctcagcctcccaaagtgctgggaatacaggcatgagccaccgca
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     778368 93 -   1829203 ccatgttaggcaggatggtctcgatctcctgaactcgtgatccgcctgcctcagcctcccaaagtgctgggagtacaggcatgagctaccgcg
i colAng1.NW_012115577v1   C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e canFam3.chr12              393605 1428 +  72498081 I
e saiBol1.JH378327           111176 2510 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I
e macFas5.chr4             30558459  0 - 170955103 C
e nomLeu3.chr1a            75355705 767 + 122973662 M

a score=-267.000000
s hg38.chr6_GL000254v2_alt  1913424 5 +   4827813 -cccca
s panTro5.chr6             30759111 5 + 175400573 -ccccg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31182720 5 + 173848474 -ccccg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     689716 5 +   2037526 -ccccg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31269609 4 + 172585720 -cctg-
i rheMac8.chr4             C 0 C 0
s macNem1.NW_012012100v1     854521 4 +   1495729 -cctg-
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      78181 4 -    811324 -cccg-
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30109091 4 -  71996105 -cccg-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     115719 4 +    779361 -ccca-
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     778461 4 -   1829203 -ccca-
i colAng1.NW_012115577v1   C 0 C 0
s canFam3.chr12              395033 5 +  72498081 cccca-
i canFam3.chr12            I 1428 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e saiBol1.JH378327           111176 2510 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I
e macFas5.chr4             30558459 0 - 170955103 C
e nomLeu3.chr1a            75355705 767 + 122973662 M

a score=26488.000000
s hg38.chr6_GL000254v2_alt  1913429 6 +   4827813 gcccag
s panTro5.chr6             30759116 6 + 175400573 gcccag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31182725 6 + 173848474 gcccag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     689721 6 +   2037526 ggccag
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31269613 6 + 172585720 gcccag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30558459 6 - 170955103 gccCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     854525 6 +   1495729 gccCAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      78185 6 -    811324 gcccag
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30109095 6 -  71996105 gccCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     115723 6 +    779361 gcccag
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     778465 6 -   1829203 gccCAG
i colAng1.NW_012115577v1   C 0 C 0
s canFam3.chr12              395038 4 +  72498081 gctt--
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     700448 3164 -   1411461 I
e saiBol1.JH378327           111176 2510 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I
e nomLeu3.chr1a            75355705 767 + 122973662 M

a score=1424588.000000
s hg38.chr6_GL000254v2_alt  1913435 247 +   4827813 gtcatccttttaaaatgtaggttggatcacatcactctgctcagaactctgcagtgacttcc-atttaaatcaacagaagaagccaaaatc-cttaagataatttaaaagacctttcccaatccagaccctgctttacttctcttttcacctttcccacaa-ctctggctcactcgtgccactccagcccctcttgcctccttcctgtttgttcccca-tgtatgtc-cgaacactcctgtcacagggcttt
s panTro5.chr6             30759122 246 + 175400573 gtcatccttttaaaatgtaggttggatcacatcactctgctcagaactctg-agtgacttcc-atttaaatcaacagaagaagccaaaatc-cttaagataatctaaaagacctttcccaatccagaccctgctttacttctcttttcacctttcccacaa-ctctggctcactcatgccactccagcccctcttgcctccttcctgtttgttcccca-tgtatgtc-cgaacactcctgtcacagggcttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31182731 246 + 173848474 gtcatccttttaaaatgtaggttggatcacatcactctgctcagaactctg-agtgacttcc-atttaaatcaacagaagaagccaaaatc-cttaagataatctaaaagacctttcccaatccagaccctgctttacttctcttttcacctttcccacaa-ctctggctcactcatgccactccagcccctcttgcctccttcctgtttgttcccca-tgtatgtc-cgaacactcctgtcacagggcttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     689727 247 +   2037526 gtcatccttttaaaatgtaggttggatcacatcactctgctcagaactctgcagtgacttcc-atttaaatcaacagaagaagccaaaatc-cttaagataatctaaaagacctttcccaatccagaccctgctttacttctcttttcacctttcccacaa-ctctggctcactcatgccactccagcccctcttgcctccttcctgtttgttcccca-tgtatgtc-caaacactcctgtcatagggcttt
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31269619 247 + 172585720 gtcatccttttaaaatgtaggttggatcacatcactgtgcttagaagtctgcagtgacttcc-atttaaatcaacagaagaagccaaaatc-tttaagataagctaaaagacctttcccaatccagaccctgctttacttctcttttcacctttcccacaa-ctctggctcactcatgccaccccagccccacttgcctccttcctgtttgtttccca-tgtatgtc-agaacactcctgccatagggcttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30558465 247 - 170955103 gtcatccttttaaaatgtaggttggatcacatcactgtgcttagaagtctgcagtgacttcc-atttaaatcaacagaagaagccaaaatc-tttaagataagctaaaagacctttcccaatccagaccctgctttacttctcttttcacctttcccacaa-ctctggctcactcatgccaccccagccccacttgcctccttcctgtttgtttccca-tgtatgtc-agaacactcctgccatagggcttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     854531 247 +   1495729 gtcatccttttaaaatgtaggttggatcacatcactgtgcttagaagtctgcagtgacttcc-atttaaatcaacagaagaagccaaaatc-tttaagataagctaaaagacctttcccaatccagaccctgctttacttctcttttcacctttcccacaa-ctctggctcactcatgccaccccagccccacttgcctccttcctgtttgtttccca-tgtatgtc-agaacactcctgccatagggcttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      78191 248 -    811324 gtcatccttttaaaatgtaggttggatcacatcactgtgcttagaagtctgcagtgacttcc-atttaaatcaacagaagaagccaaaatcttttaagatcagctaaaagacctttcccaatccagaccctgctttacttctcttttcacctttcccacaa-ctctggctcactcatgccactccagccccacttgcctccttcctgtttgtttccca-tgtatgtc-agaacactcctgccatagggcttt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30109101 237 -  71996105 gtcatccttttaaaatgtaggttggatcacatcactgtgcttagaagtctgcagtgacttcc-atttaaatcaacagaagaagccaaaatc-tt----------taaaagacctttcccaatccagaccctgctttacttctcttttcacctttcccacaa-ctctggctcactcatgccactccagccccacttgcctccttcctgtttgtttccca-tgtatgtc-agaacactcctgccatagggcttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     115729 245 +    779361 gtcatccttttaaaatgtaggttggatcacatcactgtgcttagaagtctgcagtgacttcc-atttaaatcaacagaggaagccaaaatc-tttaagataaactaaaagacctttcccaatccaaaccctgctttact--tcttttcacctttcccacaa-ctctggctcactcatgccaccccagccccacttgcctccttcctgtttgtttccca-tgtatgtc-agaacactcctgccatagggcttt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     778471 247 -   1829203 gtcatccttttaaaatgtaggttggatcacatcactgtgctcagaagtctgcagtgacttcc-atttaaatcaacagaagaagccaaaatc-tttaagataagctaaaagacctttcccaatccagaccctgcttcactactcttttcacctttcccacaa-ctctggcttactcatgccactacagccccacttgcctccttcctgtttgtttccca-tgtatgtc-cgaaccctcctgccatagggcttt
i colAng1.NW_012115577v1   C 0 C 0
s proCoq1.NW_012149775v1     703612 243 -   1411461 gtcaccctttaaaaatgtagcttgggtcatgttactctgtttagaaccttgcaatgactttc-attttaatcaagagaagaagccaaaatc-cttaagatgacctaaaacacctttcccaatccagaccttgctttacctctctgttggcctttcaaaca------gagtgactcatgtcactccagccacactggcttctttcctgtttgttcctca-tatatgccaagtacacccctgccatagaacatg
i proCoq1.NW_012149775v1   I 3164 C 0
s canFam3.chr12              395042 235 +  72498081 gtgctctctctcaaataaatctaaaatcataacaa-------aaaCccttgtaatgactttctattttagtcaagggtagaagccaaattc-ttc-agatgacctacaagacccttcccaatccagaccccgctttacttttctgttcacctctccaacaatctctt-----ctcacactggaccatccacactg---tccttgctgtttgttcctcattttataccaagtacacttctgatatagagcttt
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e saiBol1.JH378327           111176 2510 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e calJac3.chr4             30940712 3196 + 171630274 I
e nomLeu3.chr1a            75355705 767 + 122973662 M

a score=1423124.000000
s hg38.chr6_GL000254v2_alt  1913682 203 +   4827813 actccagctgtttcttatgctag--aaaggcccttctcctggaaatccatgtggccaaaa--ctaatcttctttaatgatttgcttgaatttcactttactgaggcctc-----------at--ttaagactaaaatctgtcct-cttgatacttttaaacttgatccatattttcttttatctataggatcatctcccctgctggaaacctaatcagaga
s panTro5.chr6             30759368 203 + 175400573 actccagctgtttcttatgctag--aaaggcccttctcctggaaatccatgtggccaaaa--ctaatcttctttaatgatttgcttgaatttcactttactgaggcctc-----------at--ttaagactaaaatctgtcct-cttgatacttttaaacttgatccatattttcttttatctataggatcatctcccctgctagaaatgtaaacagaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31182977 203 + 173848474 actccagctgtttcttatgctag--aaaggcccttctcctggaaatccatgtggccaaaa--ctaatcttctttaatgatttgcttgaatttcactttactgaggcctc-----------at--ttaagactaaaatctgtcct-cttgatacttttaaacttgatccatattttcttttatctataggatcatctcccctgctagaaatgtaaacagaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     689974 203 +   2037526 actccagctgtttcttatgctag--aaaggcccttctcctggaaatccatgtggccaaaa--ctaatcttctttaatgatttgcttgaatttcactttactgaggcctc-----------at--ttaagactaaaatctgtcct-cttgatacttttaaacttgatccatattttcttttatctataggatcatctcccctgctagaaatgtaatcagaga
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31269866 205 + 172585720 attccagctgtttcttatgctagataaaggcccatctcctggaaatccatgtggccaaaa--ctaatcttcttcaatgatttgcttgaatttcactttactgaggcctc-----------at--ttagtactaaaatctgtcct-ttttatacttttaaacttgatctatattttcttttatctatagtatcatctcccttgctagaaatgtaatcagaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30558712 205 - 170955103 attccagctgtttcttatgctagataaaggcccatctcctggaaatccatgtggccaaaa--ctaatcttcttcaatgatttgcttgaatttcactttactgaggcctC-----------AT--TTAGTACTAAAATCTGTCCT-TTTTATACTTTTAAACTTGATCtatattttcttttatctatagtatcatctcccttgctagaaatgtaatcagaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     854778 205 +   1495729 attccagctgtttcttatgctagataaaggcccatctcctggaaatccatgtggccaaaa--ctaatcttcttcaatgatttgcttgaatttcactttactgaggcctc-----------at--ttagtactaaaatctgtcct-ttttatacttttaaacttgatctatattttcttttatctatagtatcatctcccttgctagaaatgtaatcagaga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      78439 205 -    811324 attccagctgtttcttatgctagataaaggcccatctcctggaaatccatgtggccaaaa--ctaatcttcttcaatgatttgcttgaatttcactttactgaggcctc-----------at--ttagtactaaaatctgtcct-ttttatacttttaaacttgatctatattttcttttatctatagtatcatctcccttgctagaaatgtaatcagaga
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30109338 205 -  71996105 attccagctgtttcttatgctaggtaaaggcccatctcctggaaatccatgtggccaaaa--ctaatcttcttcaatgatttgcttgaatttcactttactgaggcctc-----------at--ttagtactaaaatctgtcct-ttttatatttttaaacttgatctatattttcttttatctatagtatcatctcccttgctagaaatgtaatcagaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     115974 205 +    779361 attccagctgtttcttatgctagataaaggcccatctcctggaaatccatgtggccaaaa--ctaatcttcttcaatgatttgcttgaatttcactttactgaggcctc-----------at--ttagtactaaaatctgtcct-ttttatacttttaaacttgatctatattttcttttatctatagtatcatctcccttgctagaaatgtaatcagaga
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     778718 205 -   1829203 attccagctgtttcttatgctagataaaggcccatctcctggaaatccctgtggccaaaa--ctaatcttcttcaatgatttgcttgaatttcactttactgaggcctC-----------AT--TTAGTACTAAAATCtgtcct-tttgatacttttaaacttgatctatattttcttttatctatagtatcatctcccttgctagaaatgtaatcagaga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30943908 203 + 171630274 attccagctgtttcttctgctgg--aaagccccttctcctggaaatccatgtggccaaaa--ctaatcttcttcagtgatttgcttgaatttcactttcctgaggcctc-----------gt--ttagtactaaaatctgttct-cctgatacttttaaacttgatctgtattttcttttatccatagcatcatctcccctgctagaaatgtaatcatagg
i calJac3.chr4             I 3196 C 0
s proCoq1.NW_012149775v1     703855 211 -   1411461 gccccagctatgccttctgctag--aaagacttttctcccagaaatccatgtggccaaaa--ctcaccttcctctagg----gtttgaatttcacttcactgaggcctcatgaagagtctat--ttagtactacaacctgccctccctgatattttttaccttgatctctattttcttttatctatagcattatttcccctgctaggaatgtaagcagaga
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr12              395277 199 +  72498081 gctctagctattccttctgccag--caaggctcctctcctcgaaacccatgcagccaaaactctcaccttcttcaagg-------tgaatttcacttcactgaggcttc-----------atagtttatactacaacctgccct-cttggtactttt-accttgacctgtattttcttttttccatggcattctctctcctactggaaatgtgagcagagg
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e saiBol1.JH378327           111176 2510 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e cebCap1.NW_016107755v1    1356344 2316 -   1771730 I
e nomLeu3.chr1a            75355705 767 + 122973662 M

a score=573954.000000
s hg38.chr6_GL000254v2_alt  1913885 71 +   4827813 tctttattttattcagtagtatcccaagagcgtagaagagtgcctggcacatactatacactcaataaata
s panTro5.chr6             30759571 71 + 175400573 tctttattttattcagtagtatcccaagagcgtagaagagtgcctggcacatactatacactcaataaata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31183180 71 + 173848474 tctttattttattcagtagtatcccaagagcgtagaagagtgcctggcacatactataaactcaataaata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     690177 71 +   2037526 tctttattttattcagtagtatcccaagagcgtagaagagtgcctggcacatactatacactcaataaata
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31270071 71 + 172585720 tctttattttattcagtagtatcccaagagcatagaatagtgcctggcacatactatacactcaataaata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30558917 71 - 170955103 tctttattttattcagtagtatcccaagagcatagaatagtgcctggcacatactatacactcaataaata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     854983 71 +   1495729 tctttattttattcagtagtatcccaagagcatagaagagtgcctggcacatactatacactcaataaata
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      78644 71 -    811324 tctttattttattcagtagtatcccaagagcatagaagagtgcctggcacatactatacactcaataaata
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30109543 71 -  71996105 tctttattttattcagtagtatcccaagagcatagaagagtgcctggcacatactatacactcaataaata
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     116179 71 +    779361 tctttattttattcagtagtatcccaagagcatagaagagtgcctggcacatactatacactcaataaata
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     778923 71 -   1829203 tctttattttattcagtagtatcccaagagcatagaagagtgcctggcacatactatacactcaataaata
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30944111 70 + 171630274 tctttattttattcagtagtaacccaagagcctagaggagtgctggacacatactacatattcaataaat-
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1358660 70 -   1771730 tctttattttattcagtagtaacccaagagcctagaagagtattgggcacatactacatattcaataaat-
i cebCap1.NW_016107755v1   I 2316 C 0
s proCoq1.NW_012149775v1     704066 66 -   1411461 -----tttttattcagtggtatcccaagggcctaaaagagtccctggcacatactatacactcaataaata
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr12              395476 66 +  72498081 tctttattttattcactg--agcccaagagcctagaagagtgtctggcatataccatgtacttaaaca---
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e saiBol1.JH378327           111176 2510 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e aotNan1.NW_018511496v1      58569 2832 -    566255 I
e nomLeu3.chr1a            75355705 767 + 122973662 M

a score=1059664.000000
s hg38.chr6_GL000254v2_alt  1913956 122 +   4827813 tatttgttgaacagatgaatGAAAAAATGAGGCAGACTTAGCTGgctgatggattgattaggggaggaggaatggagaaagaggatgatgacctttcagttttggcccaaataactgaatga
s panTro5.chr6             30759642 122 + 175400573 tatttgttgaacagatgaatGAAAAAATGAGGCAGACTTAGCTGgctgatggattgattaggggaggaggaatggagaaagaggatgatgacctttcagttttggcccaaataactgaatga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31183251 122 + 173848474 tatttgttgaacagatgaatGAAAAAATGAGGCAGACTTAGCTGgctgatggattgattaggggaggaggaatggagaaagaggatgatgacctttcagttttggcccaaataactgaatga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     690248 122 +   2037526 tatttgttgaacagatgaatGAAAAAATGAGGCAGACTTAGCTGgctgatggattgattaggggaggaggaatggagaaagaggatgatgacctttcagttttggcccaaataactgaatga
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31270142 118 + 172585720 tatttgttgaacagatgaatGAAAAAATGAGGCAGACTTAGCttgctgatggattgatt-ggggaggaggaatggagaaagag---gacgacctttcagttttggcccaaataactgaatga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30558988 118 - 170955103 tatttgttgaacagatgaatGAAAAAATGAGGCAGACTTAGCttgctgatggattgatt-ggggaggaggaatggagaaagag---gacgacctttcagttttggcccaaataactgaatga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     855054 118 +   1495729 tatttgttgaacagatgaatGAAAAAATGAGGCAGACTTAGCttgctgatggattgatt-ggggaggaggaatggagaaagag---gacgacctttcagttttggcccaaataactgaatga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      78715 118 -    811324 tatttgttgaacagatgaatGAAAAAATGAGGCAGACTTAGCttgctgatggattgatt-ggggaggaggaatggagaaagag---gacgacctttcagttttggcccaaataactgaatga
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30109614 118 -  71996105 tatttgttgaacagatgaatGAAAAAATGAGGCAGACTTAGCttgctgatggattgatt-ggggaggaggaatggagaaagag---gatgacctttcagttttggcccaaataactgaatga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     116250 118 +    779361 tatttgttgaacagatgaatGAAAAAATGAGGCAGACTTAGCttgctgatggattgatt-ggggaggaggaatggagaaagag---gacgacctttcagttttggcccaaataactgaatga
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     778994 118 -   1829203 tatctgttgaacagatgaatGAAAAAATGAGGCAGACTTAGCttgctgatggattgatt-ggggaggaggaatggagaaagag---gatgacctttcagttttggcccaaataactgaatga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30944181 119 + 171630274 tatttgttgaacagatgaatGAATCAATGAGGCAGGCTTAGCttgctgatggactgattaggggaggaggaatagagaaagag---gatgacctttcagttttggcctagataactgaatgc
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1358730 115 -   1771730 tatgtgttgaacag----atgcatCAATGAGGCAGACTTAGCttgctgatggactgattaggggcggaggaatagagaaagac---gatgacctttcagttttggcctaaataactgaatga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      61401 119 -    566255 tatttattgaacagatgaatGAATCAATGAGGCAGACTTAGCttgctaatggactgattaggggaggaggaatagagaaagag---gatgacctttcagttttggcctaaataactgaatga
i aotNan1.NW_018511496v1   I 2832 C 0
s proCoq1.NW_012149775v1     704132 113 -   1411461 tttttgtcaaacaaatgaatGAATGAATGAGGCAAACatggcttgctgatg------ttagggtaggggaaatggagaaagag---gatgaccttccagttttggcccaaattactgggtga
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr12              395542  90 +  72498081 tgttttttg----------------aataaagtagacatggcttgctgatg-------------agggggaatggagagagcg---aatgacctttcagtttgggctcaagtaaataaatga
i canFam3.chr12            C 0 I 174
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e saiBol1.JH378327           111176 2510 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e nomLeu3.chr1a            75355705 767 + 122973662 M

a score=1033308.000000
s hg38.chr6_GL000254v2_alt  1914078 114 +   4827813 cctgtggtgcaatttcttga--tggggaagcctggaagag--aca--ggctttaggagtaagaacaagagctccattttgtacgtatg----a----gagaga-tttattaaagatctcagagaagatg
s panTro5.chr6             30759764 114 + 175400573 cctgtggtgcaatttcttga--tggggaagactggaagag--aca--ggctttaggagtaagaacaagagctccattttgtacgtatg----a----gagaga-tttattaaagatctcagagaagatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31183373 114 + 173848474 cctgtggtgcaatttcttga--tggggaagcctggaagag--aca--ggctttaggagtaagaacaagagctccattctgtacgtatg----a----gagaga-tttattaaagatctcagagaagatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     690370 114 +   2037526 cctgtggtgcaatttcttga--tgaggaagcgtggaagag--aca--ggctttaggagtaagaacaagagctccattttgtacgtatg----a----gagaga-tttattaaagatctcagagaagatg
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31270260 114 + 172585720 catgtggtgcaatttctgga--tggggaagcctggaagag--aca--ggctttaggggtaagaacaagagctccattttgtacgtatt----a----gagaga-gttattaaagatctcagagaagatg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30559106 114 - 170955103 catgtggtgcaatttctgga--tggggaagcctggaagag--aca--ggctttaggggtaagaacaagagctccattttgtacgtatt----a----gagaga-gttattaaagatctcagagaagatg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     855172 114 +   1495729 catgtggtgcaatttctgga--tggggaagcctggaagag--aca--ggctttaggggtaagaacaagagctccattttgtacgtatt----a----gagaga-gttattaaagatctcagagaagatg
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      78833 114 -    811324 catgtggtgcaatttctgga--tggggaagcctggaagag--aca--ggctttaggggtaagaacaagagctccattttgtacgtatt----a----gagaga-tttattaaagatctcagagaagatg
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30109732 114 -  71996105 catgtggtgcaatttctgga--tggggaagcctggaagag--aca--ggctttaggggtaagaacaagagctccattttgtacgtatt----a----gagaga-tttattaaagatctcaaagaaggtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     116368 114 +    779361 catgtggtgcaatttctgga--tggggaagcctggaagag--aca--ggctttaggggtaagaacaagagctccattttgtacgtatt----a----gagaga-tttattaaagatctcagagaaaatg
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     779112 114 -   1829203 catgtggtgcaatttctgga--tggggaagcctggaagag--aca--ggctttaggggtaagaacaaaagcgccattttgtacgtatt----a----gagaga-gttattaaagatctcagagaagatg
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30944300 116 + 171630274 catgtggtgcaatttcatga--tggggaagcctggaagagacaca--ggctttagcagtaaaaacaagagctccattttgtacatatt----a----gagata-cttattaaagatctcagagaagatg
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1358845 116 -   1771730 catgtggtgcaatttcatga--tggggaagcctggaagagacaca--ggctttagcagtaaaaacaagagcttcattttgtacatatc----a----gagata-tttattaaagatcgcagagaagatg
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      61520 116 -    566255 catgtggtgcaatttcatga--tggggaagcctggaagagacaca--ggctttagcagtaaaaacaagagctccattttgtacatatt----a----gagata-tctattaaagatctcagagaagatg
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     704245 122 -   1411461 aaggtagtgtgatttcttgaggtagggaagcctggaagag--acatgggctttaagagtaaaaacaagagctccattttgtgcatattaatca----gaggca-tttattagagatctcagagaggatg
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr12              395806 120 +  72498081 ccaatgatgtgatttattgg--t-gggaaatctggaagagacaca--gggttaaggaataaaaacaagagctcagttttgcaaatatt----aatttgagatattttattagagatctgagagagcatg
i canFam3.chr12            I 174 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e saiBol1.JH378327           111176 2510 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I
e nomLeu3.chr1a            75355705 767 + 122973662 M

a score=728882.000000
s hg38.chr6_GL000254v2_alt  1914192 68 +   4827813 tcccataagcagttgaattcatgagcctggagctcggggcagaagttgggggccagcaagagaagttt
s panTro5.chr6             30759878 68 + 175400573 tcccataagcagttgaattcatgagcctggagctcggggcagaagttgggggccagcaagagaagttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31183487 68 + 173848474 tcccataagcagttgaattcatgagcctggagctcggggcagaagttgggggccagcaagagaagttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     690484 67 +   2037526 tcccataagcagttgaattcatgagcctggagctcggggcagaagtt-ggggccagcaagagaagttt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75356472 67 + 122973662 TCCCAtaagcagttgaattcgtgagcctggagctcggggaagaagtt-ggggccagcaagagaagttt
i nomLeu3.chr1a            M 767 C 0
s rheMac8.chr4             31270374 68 + 172585720 tcccataagcagttgaattcatgagcctggagctcagggcagaagttaggggccagcaagagaagttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30559220 68 - 170955103 tcccataagcagttgaattcatgagcctggagctcagggcagaagttaggggccagcaagagaagttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     855286 68 +   1495729 tcccataagcagttgaattcatgagcctggagctcagggcagaagttaggggccagcaagagaagttt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      78947 68 -    811324 tcccataagcagttgaattcatgtgcctggagctcagggcagaagttaggggccagcaagagaagttt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30109846 68 -  71996105 tcccataagcagttgaattcatgagcctggagctcagggcagaagttaggggccagcaagagaagttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     116482 68 +    779361 tcccataagcagttgaattcatgagcctggagctcagggcagaagttaggggccagcaagagaagttt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     779226 68 -   1829203 tcccataagcagttgaattcatgagcctggagctcggggcagaagttaggggccagcaagagaagttt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30944416 68 + 171630274 tccagtaaacagttgaattcatgggcctggagctcgggtcagaagttgggggccagcaagaaaagttt
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107755v1    1358961 68 -   1771730 tccagtaaacagttgaattcatgagcctggagctcgggtcagaagttgggggccagcgagaaaacttt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      61636 68 -    566255 ttcagtaaacagttgaattcatgagcctggagctcgggtcagaagttgggggccagcaagaaaagttt
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     704367 67 -   1411461 tccagtaaacagttggatacatgagcctggagctcagggtagaagtt-ggggccagcaagagacattt
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr12              395926 64 +  72498081 ttcattaagcagttggatttgtgagcctgaagcttagggcagaaattggtg----tcaagagacatcc
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e saiBol1.JH378327           111176 2510 -    750284 I
e otoGar3.GL873550           721159 2506 +  18854210 I

a score=195169.000000
s hg38.chr6_GL000254v2_alt  1914260 16 +   4827813 gggaatcttcattggt
s panTro5.chr6             30759946 16 + 175400573 gggaatcttcattggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31183555 16 + 173848474 gggaatcttcattggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     690551 16 +   2037526 gggaatcttcattggt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75356539 16 + 122973662 gggaatcttcattggt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31270442 16 + 172585720 gggaatcttcattggt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30559288 16 - 170955103 gggaatcttcattggt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     855354 16 +   1495729 gggaatcttcattggt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      79015 16 -    811324 gggaatcttcattggt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30109914 16 -  71996105 gggaatcttcattggt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     116550 16 +    779361 gggaatcttcattggt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     779294 16 -   1829203 gggaatcttcattggt
i colAng1.NW_012115577v1   C 0 I 332
s calJac3.chr4             30944484 12 + 171630274 gggaatcttcat----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           113686 16 -    750284 gggaatctttattggt
i saiBol1.JH378327         I 2510 C 0
s cebCap1.NW_016107755v1    1359029 16 -   1771730 gggaatcttcattggt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      61704 16 -    566255 gggaatcttcattggt
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     704434 16 -   1411461 gggactcttcatcagt
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr12              395990 16 +  72498081 agagatcttcgtcagt
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e otoGar3.GL873550           721159 2506 +  18854210 I

a score=2251435.000000
s hg38.chr6_GL000254v2_alt  1914276 203 +   4827813 tatagatggtatttaaagtcaggaggtgataggtgataagtctagattaaggagagtgtcaaagatttagccctgaggca----------------cttcaacatttagacttc----------------------aggaga--------------------------agcccattagatgcaaaggaaacctatagagagtagtgtccctgaagaaaaca----aaggagggagggagcgaccaagtctatcaaacattgatgggagagt
s panTro5.chr6             30759962 203 + 175400573 tatagatggtatttaaagtcaggaggtgataggtgataagtctagattaaggagagtgtcaaagatttagccctgaggca----------------cttcaacatttagacttc----------------------aggaga--------------------------agcccattagatgcaaaggaaacctatagagagtagtgtccctgaagaaaaca----aaggagggagggagcgaccaagtctatcaaacactgatgggagagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31183571 203 + 173848474 tatagatggtatttaaagtcaggaggtgataggtgataagtctagattaagtagagtgtcaaagatttagccctgaggta----------------cttcaacatttagacttc----------------------aggaga--------------------------agcccattagatgcaaaggaaacctatagagagtagtgtccctgaagaaaaca----aaggagggagggagcgaccaagtctatcaaacattgatgggagagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     690567 202 +   2037526 tatagatggtatttaaagtcaggaggtgataggtgataagtctagattaaggagagtgtcaaagatttagccctga-gca----------------cttcaacatttagacttc----------------------aggaga--------------------------agcccattagatgcaaaggaaacctatagagagtagtgtccctgaagaaaaca----aaggagggagggagcgaccaagtctatcaaacattgatgggagagt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75356555 206 + 122973662 tatagatggta-ttaaagtcaggaggtaataggtgataagtctatattaaggagaatgtcaaagatttagccctgaggca----------------cttcaacatttagacttc----------------------aggaga--------------------------agcccattagatgcaaaggaaacctatagagagtagtgtccctgaagaaaacaaaggaaggagggagggagtgaccaagtctatcaaacattgatgggagagt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31270458 207 + 172585720 tatagacggtatttaaagtcaggaggtaataggtgataagtctagattaaggagagggtcaaagattgagccctgaggca----------------cttcaacatttaaacttc----------------------aggaga--------------------------agcccattagatacaaaggaaacctgtagagagtagtgtccctgaagaaaacaaaggaaggagggagggagtgaccaagtgtatcagatgttgttgggagagt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30559304 207 - 170955103 tatagacggtatttaaagtcaggaggtaataggtgataagtctagattaaggagagggtcaaagattgagccctgaggca----------------cttcaacatttaaacttc----------------------aggaga--------------------------agcccattagatacaaaggaaacctgtagagagtagtgtccctgaagaaaacaaaggaaggagggagggagtgaccaagtgtatcagatgttgttgggagagt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     855370 207 +   1495729 tatagacggtatttaaagtcaggaggtaataggtgataagtctagattaaggagagggtcaaagattgagccctgaggca----------------cttcaacatttaaacttc----------------------aggaga--------------------------agcccattagatacaaaggaaacctgtagagagtagtgtccctgaagaaaacaaaggaaggagggagggagtgaccaagtgtatcagatgttgttgggagagt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      79031 207 -    811324 tatagacggtatttaaagtcaggaggtaataggtgataagtctagattaaggagagggtcaaagattgagccctgaggca----------------cttcaacatttaaacttc----------------------aggaga--------------------------agcccatttgatacaaaggaaacctgtagagagtagtgtccctgaagaaaacaaaggaaggagggagggagtgaccaagtgtatcagatgttgttgggagagt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30109930 207 -  71996105 tatagacggtatttaaagtcaggaggtaataggtgataagtctagattaaggagagggtcaaagattgagccctgaggca----------------cttcaacatttaaacttc----------------------aggaga--------------------------agcccattagatacaaaggaaacctgtagagagtagtgtccctgaagaaaacaaaggaaggagggagggagtgaccaagtgtatcagatgttgttgggagagt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     116566 207 +    779361 tatagacggtatttaaagtcaggaggtaataggtgataagtctagattaaggagagggtcaaagattgagccctgaggca----------------cttcaacatttaaacttc----------------------aggaga--------------------------agcccattagatacaaaggaaacctgtagagagtagtgtccctgaagaaaacaaaggaaggagggagggagtgaccaagtgtatcagatgttgttgggagagt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     779642 207 -   1829203 tatagatggtatttaaagtcaggaggtaataggtgataaatctagattaaggagagagtcaaagattgagccctgaggca----------------catcaacatttaaacttc----------------------aggaga--------------------------agcctattagatacaaaggaaacctgtagagagtagtgtccctgaagaaaacaaaggaaggagggacggagtgaccaagtgtaccagatgttgttgggagagt
i colAng1.NW_012115577v1   I 332 C 0
s calJac3.chr4             30944496 202 + 171630274 ------tggtatttaaagtcaggaggtaatagttgataaatcgagattaaagagagtgtcaaagattgaggcctgaggca----------------cttcaacatttagacttcagg-------------------aggaga--------------------------agcccattagacacaaaggaaacctgtggagagtaatatccctgaagaaaacaaaggaaagagggagtgagagaccaggtgtatcac--gttattgggaaagt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           113702 210 -    750284 tatagatggtacttaaagtcaggaggtaataggtgataagtcgaaattaaagatagtgtcaaagattgaggcctgaggca----------------cttcaacatttagacttcagg-------------------aggaga--------------------------agcccattagacataaaggaaacctttggagagtagtgtccctggagaaaacaaaggaaagagggaatgagaaaccaagtgtgtcacatgttattggaggagt
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1359045 203 -   1771730 tatagatggtatttaaagtcaggaggtgataggtggtaagtcgagattaaagacagtgtcaaagattgaggcctgaggca----------------cttcaacatttagacttcagg-------------------aggaga--------------------------aacccattagacacaaaggaaacctgtggagagtagtgtccctgaagaaaac-------agagggagtgagagaccaagtgtatcacatgttattgggagagt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      61720 209 -    566255 tatagatggtatttaaagtcaggaggtaataggtgataagtcgagattaaagagagtgtcaaagattgaggcctgaggca----------------cttcaacatttagacttcagg-------------------aggaga--------------------------agcccattagacacaaaggaaacctgtggagagtagtgtccctgaagaaaacaaaggaaagagggagtgagat-ccaggtgtttcacatgttattgggagagt
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     704450 231 -   1411461 tataggtgttatttaaagtcatgacac-atagataataagtctagataaagaagagtttcaaagattgagccttgatgca----------------cttcaacatttagaccttagg-------------------aggagaagccagcaagggaggggtaagggagcagcccatgagatgaaaaggaaacccatagagagcactgtctcttaagaaaaca----aaggaaggagggagtgaccaagtgtatcagatgttgctgggagagt
i proCoq1.NW_012149775v1   C 0 I 18
s canFam3.chr12              396006 243 +  72498081 tatgaatggtattaaaggtcgtgagac-ataggtgataagtctagatagaaaagaaggtcaaagaatgtgacctaaaaaaaaaaaaagaatgtgacctaaaacatttagacatagagaagccagaaaggagggaaagggagc--------------------------aaccactgaaatggaaggggaacctgcagaaagcagtgtccctgaaaaaaagaaaagaaagaagt-gggagtgagcatctgcatcaaatgccactgggaaaat
i canFam3.chr12            C 0 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e otoGar3.GL873550           721159 2506 +  18854210 I

a score=87616.000000
s hg38.chr6_GL000254v2_alt  1914479  8 +   4827813 --gagtagga
s panTro5.chr6             30760165  8 + 175400573 --gagtagga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31183774  8 + 173848474 --gagtagga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     690769  8 +   2037526 --gagtagga
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75356761  8 + 122973662 --gagtagga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31270665  8 + 172585720 --gagtagga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30559511  8 - 170955103 --gagtagga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     855577  8 +   1495729 --gagtagga
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      79238  8 -    811324 --gagtagga
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30110137  8 -  71996105 --gagtagga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     116773  8 +    779361 --gagtagga
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     779849  8 -   1829203 --gagtagga
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30944698  8 + 171630274 --gagtagga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           113912  7 -    750284 --gagta-ga
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1359248  8 -   1771730 --gagtagga
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      61929  8 -    566255 --gagtagga
i aotNan1.NW_018511496v1   C 0 C 0
s canFam3.chr12              396249 10 +  72498081 aagataagga
i canFam3.chr12            C 0 I 8
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e proCoq1.NW_012149775v1     704681 18 -   1411461 I
e otoGar3.GL873550           721159 2506 +  18854210 I

a score=1085542.000000
s hg38.chr6_GL000254v2_alt  1914487 100 +   4827813 tggccccagatctgttgactttggcaagtgtgaattcagacaatggtggcaacaaaagcatgattgtagtggttt-----------ga----------------------gagCTGACAGAACTACAGGAGCA
s panTro5.chr6             30760173 100 + 175400573 tggccccagatctgttgactttggcaagtgtgaattcagacaatggtggcaacaaaagcatgattgtagtggttt-----------ga----------------------gagCTGACAGAACTACAGGAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31183782 100 + 173848474 tggccccagatctgttgactttggcaagtgtgaattcagacaatggtggcaacaaaagcatgattgtagtggttt-----------ga----------------------gagCTGACAGAACTACAGGAGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     690777 100 +   2037526 tggccccagatctgttgactttggcaagtgtgaattcagacaatggtggcaacaaaagcatgattgtagtggttt-----------ga----------------------gagCTGACAGAACTACAGGAGCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75356769 100 + 122973662 tggccccagatctgttgactttggcaagtgtgaattcagacactggtggcaacaaaagcatgattgtagtggttt-----------ga----------------------gagCTGACAGAACTACAGGAGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31270673 100 + 172585720 tggccccagatttgttgactttggcaagtgtgaattcagacaatggtggcaacaaaagcatgattgtagtgattt-----------ga----------------------gagCTGACAGAACTACAGGGGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30559519 100 - 170955103 tggccccagatttgttgactttggcaagtgtgaattcagacaatggtggcaacaaaagcatgattgtagtgattt-----------ga----------------------gagCTGACAGAACTACAGGGGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     855585 100 +   1495729 tggccccagatttgttgactttggcaagtgtgaattcagacaatggtggcaacaaaagcatgattgtagtgattt-----------ga----------------------gagCTGACAGAACTACAGGGGCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      79246 100 -    811324 tggccccagatctgttgactttggcaagtgtgaattcagacaatggtggcaacaaaagcatgattgtagtgattt-----------ga----------------------gagCTGACAGAACTACAGGGGCA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30110145 100 -  71996105 tggccccagatctgttgactttggcaagtgtgaattcaggcaatggtggcaacaaaagcatgattgtagtgattt-----------ga----------------------gagCTGACAGAACTACAGGGGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     116781 100 +    779361 tggccccagatctgttgactctggcaagtgtgaattcagacaatggtggcaacaaaagcatgattgtagtgattt-----------ga----------------------gagCTGACAGAACTACAGGGGCA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     779857 100 -   1829203 tggccccagatctgttgactttggcaagtgtgaattcagacaatggtggcaacaaaagtatgattgtagtgattt-----------ga----------------------gagCTGACAGAACTACAGGGGCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30944706 116 + 171630274 tggccccagatctgttgactttggcaagtgtaaattcagggaatggtaggaacaaaagta------tactgattT-----------AATAAAATCACTACTCACGCCTGTAAGCTGACAGAACTCGGGAAGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           113919  91 -    750284 tggccccagatctgttgactttggcaaGCGTAAATTCAGAGA---GTAGGAACAAAAGTA------TAGTGATTT-----------GA----------------------GAGCTGACAGAACTCAGGGAGCA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1359256  91 -   1771730 tggccccagatctgttgactttggcaaGTGTAAATTCGGGGA---GTAGGAACAAAAGTA------TAGTGATTT-----------GA----------------------GAGCTGACAGAACTCGGGGAGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      61937  94 -    566255 tggccccagatctgttgactttggcaaGTGTAAAGTCAGGGAATAGTAAGAACAAAAGTA------TAGTGAATT-----------GA----------------------GAGCTGACAGAACTCGGGGAGCA
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     704699 102 -   1411461 tggcccctgatctcttgaccttggcaagagtgaattcaggcaacagtggggacaaaagcatgatcgtagtggtttaag--------ga----------------------gagCTGACAGGGCTACCGGAGC-
i proCoq1.NW_012149775v1   I 18 C 0
s canFam3.chr12              396267 109 +  72498081 tggcctcctatctgttgaccttgccaaggaaggactcaggcaatggtagggacaagagcatgat--cagtggtttaaggagtgaacgg----------------------gagctgagagaactatgggagCC
i canFam3.chr12            I 8 C 0
e micMur3.chr6               668904 3117 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e otoGar3.GL873550           721159 2506 +  18854210 I

a score=385349.000000
s hg38.chr6_GL000254v2_alt  1914587 34 +   4827813 CCTTGCTCAAGCTCCCA----TATTAAGTGGTAGAGTT
s panTro5.chr6             30760273 34 + 175400573 CCTTGCTCAAGCTCCCA----TATTAAGTGGTAGAGTt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31183882 34 + 173848474 CCTTGCTCAAGCTCCCA----TATTAAGTGGTAGAGTt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     690877 34 +   2037526 Ccttgctcaagctccca----tattaagtggtagagtt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75356869 34 + 122973662 CCTTGCTCAAGCTCCCA----TATTAAGTGGTAGAGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31270773 34 + 172585720 Ccttactcaagctcccg----tattaagtggtagagtt
i rheMac8.chr4             C 0 I 337
s macFas5.chr4             30559619 34 - 170955103 CCTTACTCAAGCTCCCG----TATTAAGTGGTAGAGTT
i macFas5.chr4             C 0 I 337
s macNem1.NW_012012100v1     855685 34 +   1495729 Ccttactcaagctcccg----tattaagtggtagagtt
i macNem1.NW_012012100v1   C 0 I 330
s cerAty1.NW_012002513v1      79346 34 -    811324 CCTTACTCAAGCTCCCG----TATTAAGTGGTAGAGTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30110245 34 -  71996105 CCTTACTCAAGCTCCCG----TATTAAGTGGTAGAGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     116881 34 +    779361 CCTTACTCAAGCTCCCG----TATTAAGTGGTAGAGTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     779957 34 -   1829203 CCCTACTCAAGCTCCCG----TATTAAGTCGTAGAGTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30944822 33 + 171630274 TCTAGCTCAAGCTCCTG----TA-TAAATAGTATAGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           114010 33 -    750284 CCTAGCTCAAGCTCCTG----TA-TAAATGGTATAATt
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1359347 33 -   1771730 CCTAGCTCAAGCTCCTG----TA-TAAATGGTATAGCt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      62031 33 -    566255 CCTAGCTCAAGCTCCTG----TA-TAAATGGTACAGTT
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               672021 38 + 123392446 CCTTGCTCAAGCTCCCAAACCTATTAAGTGGTAGAGTT
i micMur3.chr6             I 3117 C 0
s proCoq1.NW_012149775v1     704801 38 -   1411461 CCTTGCTCAAGGTCCCAAACCTATTAAGTGGtagggtt
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr12              396376 32 +  72498081 ------TCTTGCTCCCACATCTATTACGTGGTATAGTT
i canFam3.chr12            C 0 C 0
e mm10.chr17               59014819 1724 -  94987271 I
e otoGar3.GL873550           721159 2506 +  18854210 I

a score=155806.000000
s hg38.chr6_GL000254v2_alt  1914621 11 +   4827813 AGAAGTGAACC
s panTro5.chr6             30760307 11 + 175400573 agaaatgaacc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31183916 11 + 173848474 agaaatgaacc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     690911 11 +   2037526 agaagtgaacc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75356903 11 + 122973662 AGAAGTGAACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31271144 11 + 172585720 agaaGTGAACC
i rheMac8.chr4             I 337 C 0
s macFas5.chr4             30559990 11 - 170955103 agaaGTGAACC
i macFas5.chr4             I 337 C 0
s macNem1.NW_012012100v1     856049 11 +   1495729 aGAAGTGAACC
i macNem1.NW_012012100v1   I 330 C 0
s cerAty1.NW_012002513v1      79380 11 -    811324 AGAAGTGAACC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30110279 11 -  71996105 AGAAGTGAACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     116915 11 +    779361 AGAAGTGAACC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     779991 11 -   1829203 AGAAGTGAACC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30944855 11 + 171630274 AGAAGTGAATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           114043 11 -    750284 agaaatgaatc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1359380 11 -   1771730 agaaatgaatc
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      62064 11 -    566255 AGAAGTGAATC
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               672059 11 + 123392446 AGAAATGAACC
i micMur3.chr6             C 0 I 748
s proCoq1.NW_012149775v1     704839 11 -   1411461 ggaagtgaacc
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr12              396408 11 +  72498081 AGACGTGAACC
i canFam3.chr12            C 0 C 0
e mm10.chr17               59014819 1724 -  94987271 I
e otoGar3.GL873550           721159 2506 +  18854210 I

a score=872867.000000
s hg38.chr6_GL000254v2_alt  1914632 76 +   4827813 AAAGTcttgattgtggtgatagtttactgggtttatgcaggtcaaaactt--atttaagtg-atactttgcagtttatt
s panTro5.chr6             30760318 76 + 175400573 aaagtcttgattgtggtgatagtttactgggtttatgcatgtcaaaactt--atttaagtg-atactttgcagtttagt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31183927 76 + 173848474 aaagtcttgattgtggtgatagtttactgggtttatgcatgtcaaaactt--atttaagtg-atactttgcagtttagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     690922 76 +   2037526 aaagtcttgattgtggtgatagtttactgggtttatgcatgtcaaaactt--atttaagtg-atactttgcagtttatt
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75356914 76 + 122973662 AAAGTcttgattgtggtgatagtttactgggtttatgcatgtcaaaactt--atttaagtg-atactctgcagtttatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31271155 77 + 172585720 AAAGTcttgattgtggtgatagtttactgggtttatgcatgtcaaaactt--atttaaatgtatactttgaagtttatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30560001 77 - 170955103 AAAGTcttgattgtggtgatagtttactgggtttatgcatgtcaaaactt--atttaaatgtatactttgaagtttatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     856060 77 +   1495729 AAAGTcttgattgtggtgatagtttactgggtttatgcatgtcaaaactt--atttaaatgtatactttgaagtttatt
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      79391 77 -    811324 AAAGTcttgattgtggtgatagtttactgggtttatgcatgtcaaaactt--atttaaatgtatactttgaagtttatt
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30110290 77 -  71996105 AAAGTcttgattgtggtgatagtttactgggtttatgcatgtcaaaactt--atttaaatgtatactttgaagtttatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     116926 77 +    779361 AAAGTcttgattgtggtgatagtttactgggtttatgcatgtcaaaactt--atttaaatgtatactttgaagtttatt
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     780002 77 -   1829203 AAAGTcttgattgtggtgatagtttactgggtttatgcatgtcaaaactt--atttaagtgtatactttgaagtttatt
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30944866 77 + 171630274 AAAatcttgattgtggtgatagtttattgggtttatgcatgtcaaaactt--atgtaagcgtacacttcgcggtttatt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           114054 77 -    750284 aaaatcttgattgtggtgatagtttactgggtttatgcatgtcaaaactt--acgtaagtgtacacttcgcagtttact
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1359391 77 -   1771730 aaaatcttgattgtggtgatagtttactgggtttatgcatgtcaaaactt--atgtaagtgtaaacttcgcagtttact
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      62075 76 -    566255 AAAatcttgattgtggtgatagtttactgggtttatgcatgtcaaaactt--atgtaagtgtacacttcgca-tttatt
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     704850 76 -   1411461 caaatcttgattgtgatgatggcttaatgggtttgtgcatgtcaaaactt--atcaaagtgtacactttgcagtctat-
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr12              396419 67 +  72498081 CAAatcttgattgtggtggtggtttaatggctgtatacatgccaagactttgatcaaagtgtacatt------------
i canFam3.chr12            C 0 C 0
e micMur3.chr6               672070 748 + 123392446 I
e mm10.chr17               59014819 1724 -  94987271 I
e otoGar3.GL873550           721159 2506 +  18854210 I

a score=438560.000000
s hg38.chr6_GL000254v2_alt  1914708 40 +   4827813 ttgggtgccattttattttgtgtacagtttattgtatgtc
s panTro5.chr6             30760394 40 + 175400573 ttgggtgccattttattttgtgtacagtttattgtatgtc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31184003 40 + 173848474 ttgggtgccattttattttgtgtacagtttattgtatgtc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     690998 40 +   2037526 ttgggtgccattttattttgtgtacagtttattgtatgtc
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75356990 40 + 122973662 ttgggtgccattttattttgtgtacagtttattatatgtc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31271232 40 + 172585720 ttgggtaccattttattttgtgtacagtttattgtatgtc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30560078 40 - 170955103 ttgggtaccattttattttgtgtacagtttattgtatgtc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     856137 40 +   1495729 ttgggtaccattttattttgtgtacagtttattgtatgtc
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      79468 40 -    811324 ttgggtaccattttattttgtgtacagtttattgtatgtc
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30110367 40 -  71996105 ttgggtaccattttattttgtgtacagtttattgtatgtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     117003 40 +    779361 ttgggtaccattttattttgtgtacagtttattgtatgtc
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     780079 40 -   1829203 ttgggtaccattttattttgtgtacagtttattgtatgtc
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30944943 39 + 171630274 gtgtgtgcca-tttaatttgtgtacagtttattgtatgtc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           114131 39 -    750284 gcgtgtgcca-tttaatttgtgtacagtttattgtatgtc
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1359468 39 -   1771730 gcgtgtgcca-tttaatttgtgtacagtttattgtatgtt
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      62151 39 -    566255 gtgtgtgcca-tttaatttgtgtacagtttattgtatgtc
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     704926 39 -   1411461 -cgtatgtcattttattgtgtgtgcagtttattgtatgtc
i proCoq1.NW_012149775v1   C 0 C 0
s mm10.chr17               59016543 34 -  94987271 TTGCTTGCCATTTTA-----TGTGCAA-TTACAGTAGGTC
i mm10.chr17               I 1724 C 0
s canFam3.chr12              396486 39 +  72498081 ttgcctgtcgatttattgcaagtg-agttTAGCGTGCAGC
i canFam3.chr12            C 0 C 0
e micMur3.chr6               672070 748 + 123392446 I
e otoGar3.GL873550           721159 2506 +  18854210 I

a score=783369.000000
s hg38.chr6_GL000254v2_alt  1914748 80 +   4827813 aattatatctcagtaaagctgttaccaa------------aaaaaATAAATGAACCGAAGCTCCACTGCACCGTGACTTCTGCATGTTGGGC
s panTro5.chr6             30760434 80 + 175400573 aattatatctcagtaaagctgttaccaa------------aaaaaATAAATGAACCGAAGCTCCACTGCACCATGACTTCTGCACGTTGGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31184043 80 + 173848474 aattatatctcagtaaagctgttaccaa------------aaaaaATAAATGAACCGAAGCTCCACTGCACCATGACTTCTGCACGTTGGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     691038 80 +   2037526 aattatatctcagtaaagctgttaccaa------------aaaaaATACATGAACCGAAGCTCCACTGCACCATGACTTCTGCATGTTGGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75357030 80 + 122973662 aattatatctcagtaaagctgttaccaa------------aaaaaATAAATGAACCGAAGCTCCACTGCACCATGACTTCTGCATGTTGGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31271272 90 + 172585720 aattatatctcagtaaagctgttaccagaaaaaAAAG--AAAAAAAAAAATGAACCGAAGCTCCACTGCACCATGACTTCTGCATGTTGGGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30560118 89 - 170955103 aattatatctcagtaaagctgttaccagaaaaaAAAG---AAAAAAAAAATGAACCGAAGCTCCACTGCACCATGACTTCTGCATGTTGGGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     856177 89 +   1495729 aattatatctcagtaaagctgttaccagaaaaaAAAG---AAAAAAAAAATGAACCGAAGCTCCACTGCACCGTGACTTCTGCATGTTGGGC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      79508 89 -    811324 aattatatctcagtaaagctgttaccagaaaaaAAAG---AAAAAAAAAATGAACCGAAGCTCCACTGCACCATAACTTATGCATGTTGGGC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30110407 90 -  71996105 aagtatatctcagtaaagctgttaccagaaaaaAAAG--AAAAAAAAAAATGAACCGGAGCTCCACTGCACCATGACTTCTGCATGTTGGGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     117043 86 +    779361 aattatatctcagtaaagccgttaccagaaaaaAAAG--GAAAAAAAA----AAACGAAGCTCCACTGCACCATGACTTCTGCATGTTGGGC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     780119 90 -   1829203 aattatatctcagtaaagctgttaccagaaaaaAAAG--AAAAAACAAAATGAACCGAAGCTCCACTGCACCATGACTTCTGCATGTTGGGC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30944982 75 + 171630274 acttttatctcagtaaagctgttaacga------------aaaaaAAAAATGAACCAAA-----ACTCCACCACCACTTCTGCATGtttggc
i calJac3.chr4             C 0 I 124
s saiBol1.JH378327           114170 78 -    750284 acttttatctcagtaaagctgttaacg--------------aaaaaaAAGTGAACCGAAACTCCACTCCACCACGACTTCTGCATGTTGGGC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1359507 79 -   1771730 acttttagctcagtaaagctgttaacg-------------aaaaaaAAAATGAACCGAAACTCCACTCCACCACGACTTCTGCATGTTGGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      62190 80 -    566255 acttttagctcagtaaagctgttaacga------------aaaaaAAAAATGAACCGAAACTCCACTCCACCACGACTTCTGCATGTTGGGC
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     704965 68 -   1411461 aattatacctcagtaaagctgttac----------------aaaaaaaAAAAAAT--------CACCGCACCGTGATTTCTGCTTGTTGGGT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           723665 88 +  18854210 aaTTATACCGCA-TAAAGCTGTTACCTCCTCCCACCC---TAGAAAAAAGTGAATCCAAGCTCCATCGCACCGTGATTTATGCCTGCTGGCT
i otoGar3.GL873550         I 2506 I 3
s mm10.chr17               59016577 64 -  94987271 AATTAGGAC-----AAAATTATCA----------------CACACACACAAAACTCCAGGTTCCATTGCATAATAGTTATTG------GGG-
i mm10.chr17               C 0 C 0
s canFam3.chr12              396525 79 +  72498081 AATCATACCTCAGGACCACTGTTAACATTACCCACCACCACCTCCACAAAGGAACCCGAGCTTCACCACAC-------------TGTTGGGC
i canFam3.chr12            C 0 C 0
e micMur3.chr6               672070 748 + 123392446 I

a score=13694.000000
s hg38.chr6_GL000254v2_alt  1914828 2 +   4827813 TC
s panTro5.chr6             30760514 2 + 175400573 TC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31184123 2 + 173848474 TC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     691118 2 +   2037526 TC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75357110 2 + 122973662 TC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31271362 2 + 172585720 TC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30560207 2 - 170955103 TC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     856266 2 +   1495729 TC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      79597 2 -    811324 TC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30110497 2 -  71996105 TC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     117129 2 +    779361 TC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     780209 2 -   1829203 TC
i colAng1.NW_012115577v1   C 0 C 0
s saiBol1.JH378327           114248 2 -    750284 CC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1359586 2 -   1771730 CC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      62270 2 -    566255 CC
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           723756 2 +  18854210 TA
i otoGar3.GL873550         I 3 C 0
s mm10.chr17               59016641 2 -  94987271 TG
i mm10.chr17               C 0 C 0
s canFam3.chr12              396604 2 +  72498081 TA
i canFam3.chr12            C 0 C 0
e micMur3.chr6               672070 748 + 123392446 I
e proCoq1.NW_012149775v1     705033 0 -   1411461 C
e calJac3.chr4             30945057 124 + 171630274 I

a score=959587.000000
s hg38.chr6_GL000254v2_alt  1914830 78 +   4827813 CAGTTCCCTGTTTACAATTGTACACTT----------------CGGGATTTTGTGACACATTTCAACACTGGACCGATC------------AG---ACCTCTCCCTTAG
s panTro5.chr6             30760516 78 + 175400573 CAGTTCCCTGTTTACAATTGTACACTT----------------CGGGATTTTGTGACACATTTCAACACTGGACCGATC------------AG---ACCTCTCCCTTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31184125 78 + 173848474 CAGTTCCCTGTTTACAATTGTACACTT----------------CGGGATTTTGTGACACATTTCAACACTGGACCGATC------------AG---ACCTCTCCCTTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     691120 78 +   2037526 CAGTTCCCTGTTTACAATTGTACACCT----------------CGGGATTTTGTGACACATTTCAACACTGGACCGATC------------AG---ACCTCTCCCTTAG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75357112 90 + 122973662 CAGTTCCCTGTTTACAATTGTACACTT----------------CGGGATTTTGTGACACATTTCAACACTGGACCGATCACTGGACCGATTAG---ACCTCTCCCTTAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31271364 78 + 172585720 CAGTTCCCTGTTTACAATTGTACACTT----------------CGGGATTTTGTGACACATTTCAACACTGGACCGATC------------AG---ACCTCTCCCTTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30560209 78 - 170955103 CAGTTCCCTGTTTACAATTGTACACTT----------------CGGGATTTTGTGACACATTTCAACACTGGACCGATC------------AG---ACCTCTCCCTTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     856268 78 +   1495729 CAGTTCCCTGTTTACAATTGTACACTT----------------CGGGATTTTGTGACACATTTCAACACTGGACCGATC------------AG---ACCTCTCCCTTAG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      79599 78 -    811324 CAGTTCCCTGTTTACAATTGTACACTT----------------CGGGATTTTGTGACACATTTCAACACTGGACCGATC------------AG---ACCTCTCCCTTAG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30110499 78 -  71996105 CAGTTCCCTGTTTACAGTTGTACACTT----------------CGGGATTTTGTGACACATTTCAACACTGGACCGATC------------AG---ACCTCTCCCTTAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     117131 78 +    779361 CAGTTCCCTGTTTACAATTGTACACTT----------------CGGGATTTTGTGACACATTTCAACACTGGACCGATC------------AG---ACCTCTCCCTTAG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     780211 78 -   1829203 CAGTTCCCTGTTTACAATTGTACACTT----------------CGGGATTTTGTGACACATTTCAACACTGGACCGATC------------AG---ACCTCTCCCTTAG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30945181 94 + 171630274 CAGTTCCCTGTTCACAATTGTACACTTTTGTGTACAATTGTTGTTGAATTTTGTGACACAGTTCAACACGGGACCAATC------------AG---ACCTCTCCCTCAG
i calJac3.chr4             I 124 C 0
s saiBol1.JH378327           114250 78 -    750284 CAGTTCCCTGTTTACAACTGTACACTT----------------TGAAATTTTGTGACACAGTTCAACACCGGACCAATC------------AG---ACCTCTCCCTTAG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1359588 78 -   1771730 CAGTTCCCTGTTTACAATTGTACACTT----------------CGTAATTTTGTGACACAGTTCAACACCGGACCAATC------------AG---ACCTCCCCTTTAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      62272 78 -    566255 CAGTTCCCTGTTTACAATTGTACACTT----------------CGGAATTTTGTGACACAGTTCAACACCGGACCAATC------------AG---ACCTCTCCCTTAG
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     705033 58 -   1411461 --------------------TACAGTT----------------CGGGGTTTTGTGACACATCTCAGCATTGGACCAACA------------AG---ACCTCTTCCTTAG
i proCoq1.NW_012149775v1   C 0 I 78
s otoGar3.GL873550           723758 64 +  18854210 CACTTCTTCGTTGACAATCGTACTCTT----------------CGGGATTTTATGACGGATC--------------ACA------------AG---ACATTTTCCTTAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59016643 79 -  94987271 GAGTTCCTTGGTTATATCTGTACACCT----------------GGATATTTATTGAC--ATGTCAACCAAGGGCGAGTA------------AGGTTACACTTTCCTAAG
i mm10.chr17               C 0 C 0
s canFam3.chr12              396606 69 +  72498081 CAGCTCACCGTTTACAACTCTACGCCG----------------GATCGCCTTGCGACATATCTCAACAC---------C------------AG---GCCCGTTCCTAAG
i canFam3.chr12            C 0 C 0
e micMur3.chr6               672070 748 + 123392446 I

a score=226561.000000
s hg38.chr6_GL000254v2_alt  1914908 21 +   4827813 CCATTGGTCTGCACTGTCTTT
s panTro5.chr6             30760594 21 + 175400573 CCATTGGTCTGCACTGTCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31184203 21 + 173848474 CCATTGGTCTGCACTGTCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     691198 21 +   2037526 TCATTGGTCTGCACTGTCTTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75357202 21 + 122973662 TCATTGGTCTGCGCTGTCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31271442 21 + 172585720 TCATTGGACTGCGCTGTCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30560287 21 - 170955103 TCATTGGACTGCGCTGTCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     856346 21 +   1495729 TCATTGGACTGCGCTGTCTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      79677 21 -    811324 TCATTGGACTGCGCTGTCTTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30110577 21 -  71996105 TCATTGGACTGCGCTGTCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     117209 21 +    779361 TCATTGGACTGCGCTGTCTTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     780289 21 -   1829203 TCATTGGACTGCGCTGTCTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30945275 21 + 171630274 TAATTGGACTGCGCTGTCTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           114328 21 -    750284 TCATTGGACTGCGCCGTCTTT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1359666 19 -   1771730 TCATTGGACTGCGC--TCTTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      62350 21 -    566255 TCATTGGACTGCGCTGTCTTT
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           723822 21 +  18854210 TCGATGTACCATGTCCTCCTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59016722 21 -  94987271 CCGACTGGCTGTGGTGTCTTT
i mm10.chr17               C 0 I 509
s canFam3.chr12              396675 18 +  72498081 CAGATGGACTGCG---TCTTT
i canFam3.chr12            C 0 C 0
e micMur3.chr6               672070 748 + 123392446 I
e proCoq1.NW_012149775v1     705091 78 -   1411461 I

a score=134237.000000
s hg38.chr6_GL000254v2_alt  1914929 13 +   4827813 TCTGCCCATGACC
s panTro5.chr6             30760615 13 + 175400573 TCTGCCCATGACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31184224 13 + 173848474 TCTGCCCATGACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     691219 13 +   2037526 TCTGCCCATGACC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75357223 13 + 122973662 TCTGCCCATGACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31271463 13 + 172585720 TCTGCCCGTGACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30560308 13 - 170955103 TCTGCCCGTGACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     856367 13 +   1495729 TCTGCCCGTGACC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      79698 13 -    811324 TCTGCCCGTGACC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30110598 13 -  71996105 TCTGCCCGTGACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     117230 13 +    779361 TCTGCCCGTGACC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     780310 13 -   1829203 TCTGCCCGTGACC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30945296 13 + 171630274 TCTGCCCATGACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           114349 13 -    750284 TCTGCCCATGACC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1359685  4 -   1771730 TCTG---------
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      62371 13 -    566255 TCTGCCCATGACC
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           723843 13 +  18854210 TCTGCCTTTGACC
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6               672070 748 + 123392446 I
e mm10.chr17               59016743 509 -  94987271 I
e proCoq1.NW_012149775v1     705091 78 -   1411461 I
e canFam3.chr12              396693  0 +  72498081 C

a score=339764.000000
s hg38.chr6_GL000254v2_alt  1914942 33 +   4827813 CAGTCAGTCTCGCGCCCCATGACCCTCTCCTAA
s panTro5.chr6             30760628 33 + 175400573 CAGTCAGTCTCGCGCCCCATGACCCTCTCCTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31184237 33 + 173848474 CAGTCAGTCTCGCGCCCCATGAGCCTCTCCTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     691232 33 +   2037526 CAGTCAGTCTCGCGCCCCATGACCCTCTCCTAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75357236 29 + 122973662 ----CAGTCTCGCGCCCCATGACCCTCTCCTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31271476 29 + 172585720 ----CAGTCTCGCGCCCCATGACCCTCTCCTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30560321 29 - 170955103 ----CAGTCTCGCGCCCCATGACCCTCTCCTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     856380 29 +   1495729 ----CAGTCTCGCGCCCCATGACCCTCTCCTAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      79711 29 -    811324 ----CAGTCTCGCGCCCCATGACCCTCTCCTAA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30110611 29 -  71996105 ----CAGTCTCGCGCCCCATGACCCTCTCCTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     117243 29 +    779361 ----CAGTCTCGCGCCCCATGACCCTCTCCTAA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     780323 29 -   1829203 ----CAGTCTCGCGCCCCATGATCCTCTCCTAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30945309 33 + 171630274 CAGTCAGTCTCGCGCCCCATGACCCTCTCCTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           114362 33 -    750284 CAGTCAGTCTCGCGCCCCATGACCCTCTCCCAA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1359689 18 -   1771730 ---------------CCCATGACCCTCTCCTAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      62384 33 -    566255 CAGTCAGTCTCGCGCCCCATGACCCTCTCCTAA
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550         18129804 33 -  18854210 TGGCTAGTCTCGTGCCCCATGACCCTCTCCTAA
i otoGar3.GL873550         T 41446 C 0
s canFam3.chr12              396693 10 +  72498081 -----------------------CTGCTCCTAA
i canFam3.chr12            C 0 C 0
e micMur3.chr6               672070 748 + 123392446 I
e mm10.chr17               59016743 509 -  94987271 I
e proCoq1.NW_012149775v1     705091 78 -   1411461 I

a score=241244.000000
s hg38.chr6_GL000254v2_alt  1914975 20 +   4827813 AACACGCGCAGTCTCCTCTC
s panTro5.chr6             30760661 20 + 175400573 AACACGCGCTGTCTCCTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31184270 20 + 173848474 AACACGCGCTGTCTCCTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     691265 20 +   2037526 AACACGCGCAGTCTCCTCTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75357265 20 + 122973662 AACACGCGCAGTCTCCTCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31271505 20 + 172585720 AACACGCGCAGTCTCCTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30560350 20 - 170955103 AACACGCGCAGTCTCCTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     856409 20 +   1495729 AACACGCGCAGTCTCCTCTC
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      79740 20 -    811324 AACACGCGCAGTCTCCTCTC
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30110640 18 -  71996105 AACACGCGCAGTCTC--CTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     117272 20 +    779361 AACACGCGCAGTCTCCTCTC
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     780352 20 -   1829203 AACACGCGCAGTCTCCTCTC
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30945342 20 + 171630274 AACACGCACAATTTCCTCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           114395 20 -    750284 AACACGTGCAATCTCCCCTC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1359707 20 -   1771730 AACACGCGCAATCTCCTCTC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      62417 20 -    566255 AACACGCGCAATCTCCTCTC
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550         18129837 20 -  18854210 GACGCGTGCACTCTCCACTC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12            72100908 20 -  72498081 AATACGCGCACTCTCTTCTC
i canFam3.chr12            n 0 C 0
e micMur3.chr6               672070 748 + 123392446 I
e mm10.chr17               59016743 509 -  94987271 I
e proCoq1.NW_012149775v1     705091 78 -   1411461 I

a score=39482.000000
s hg38.chr6_GL000254v2_alt   1914995 5 +   4827813 -TCTTC
s panTro5.chr6              30760681 5 + 175400573 -TCTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31184290 5 + 173848474 -TCTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      691285 5 +   2037526 -TCTTC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75357285 5 + 122973662 -TCGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              31271525 5 + 172585720 -TCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              30560370 5 - 170955103 -TCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      856429 5 +   1495729 -TCTTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1       79760 5 -    811324 -TCTTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17             30110658 5 -  71996105 -TCTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      117292 5 +    779361 -TCTTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1      780372 5 -   1829203 -TCTTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30945362 5 + 171630274 -TCTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            114415 5 -    750284 -TTTCC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1     1359727 5 -   1771730 -TCTCC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       62437 5 -    566255 -TCTCC
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6             122719171 5 - 123392446 -TCTTC
i micMur3.chr6             n 748 C 0
s otoGar3.GL873550          18129857 5 -  18854210 -TCGTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             72100928 5 -  72498081 CCCTT-
i canFam3.chr12            C 0 C 0
e mm10.chr17                59016743 509 -  94987271 I
e proCoq1.NW_012149775v1      705091 78 -   1411461 I

a score=234105.000000
s hg38.chr6_GL000254v2_alt   1915000 21 +   4827813 CCCTTCCTCTC--GTGTCTTCCT
s panTro5.chr6              30760686 21 + 175400573 CCCTTCCTCTC--GTCTCTTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31184295 21 + 173848474 CCCTTCCTCTC--GTCTCTTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      691290 21 +   2037526 CCCTTCCTCTC--GTCTCTTCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75357290 23 + 122973662 CCCTTCCTCTCTTGTCTCTTCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              31271530 23 + 172585720 CCCTTCCTCTCTTGTCTCTTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              30560375 23 - 170955103 CCCTTCCTCTCTTGTCTCTTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      856434 23 +   1495729 CCCTTCCTCTCTTGTCTCTTCCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1       79765 23 -    811324 CCCTTCCTCTCTTGTCTCTTCCT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17             30110663 23 -  71996105 CCCTTCCTCTCTTGTCTCTTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      117297 23 +    779361 CCCTTCCTCTCTTGTCTCTTCCT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1      780377 23 -   1829203 CCCTTCCTCTCTTGTCTCTTCCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30945367 23 + 171630274 CCCTTCTTCCCTTGTTTCTTCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            114420 23 -    750284 CCCTTCTTCCCTTGTTTCCTCCT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1     1359732 23 -   1771730 CACTTCTTCCCTTGTTTCTTCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       62442 23 -    566255 CCCTTCTTCCCTTGTTTCTTCCT
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6             122719176 21 - 123392446 TCCTTCCTCTCTTGTTTCCTC--
i micMur3.chr6             C 0 I 2
s otoGar3.GL873550          18129862 21 -  18854210 TCTTTCACCTCCCATTTCCTT--
i otoGar3.GL873550         C 0 I 2
s mm10.chr17                35969614 20 +  94987271 CCCCGCCACTCCTGCCTCCT---
i mm10.chr17               n 509 C 0
s canFam3.chr12             72100933 19 -  72498081 ----TTCTCTCCCGTTGGCTCCC
i canFam3.chr12            C 0 C 0
e proCoq1.NW_012149775v1      705091 78 -   1411461 I

a score=809929.000000
s hg38.chr6_GL000254v2_alt   1915021 47 +   4827813 TGCCTACCAGCCTCACCTGATGGGCTCGTGTTCTCTCCGTCCCCGAT
s panTro5.chr6              30760707 47 + 175400573 TGCCTACCAGCCTCACCTGATGGGCTCGTGTTCTCTCCGTCCCCGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31184316 47 + 173848474 TGCCTACCAGCCTCACCTGATGGGCTCGTGTTCTCTCCGTCCCCGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      691311 47 +   2037526 TGCCTACCAGCCTCACCTGATGGGCTCGTGTTCTCTCCGTCCCCGAT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75357313 47 + 122973662 TGCCTACCAGCCTCACCTGATGGGCTCGTGTTCTCTCCGTCCCCGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              31271553 47 + 172585720 TGCCTACCAGCCTCACCTGATGGGCTCGTGTTCTCTCCGTCCCCGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              30560398 47 - 170955103 TGCCTACCAGCCTCACCTGATGGGCTCGTGTTCTCTCCGTCCCCGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      856457 47 +   1495729 TGCCTACCAGCCTCACCTGATGGGCTCGTGTTCTCTCCGTCCCCGAT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1       79788 47 -    811324 TGCCTACCAGCCTCACCTGATGGGCTCGTGTTCTCTCCGTCCCCGAT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17             30110686 47 -  71996105 TGCCTACCAGCCTCACCTGATGGGCTCGTGTTCTCTCCGTCCCCGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      117320 47 +    779361 TGCCTACCAGCCTCACCTGATGGGCTCGTGTTCTCTCCGTCCCCGAT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1      780400 47 -   1829203 TGCCTACCAGCCTCACCTGATGGGCTCGTGTTCTCTCCGTCCCCGAT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30945390 47 + 171630274 TGCCTACCAGCCTCACCTGATGGGCTCGTGCTCTATCCGTCCCCGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            114443 47 -    750284 TGCCTACCAGCCTCACCTGATCGGCTCGTGCTCTATCCGTCCCCGAT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1     1359755 47 -   1771730 TGCCTACCAGCCTCACCTGATCGGCTCGTGCTCTATTCGTTCCCGAT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       62465 47 -    566255 TGCCTACCAGCCTCACCTGATGGGTTCGTGTTCTATCCGTCCCCGAT
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6             122719199 47 - 123392446 TGCCTGCCAACCTCACCTGCAGGGCTCGTGCTCTCTCCGTCCCCGAT
i micMur3.chr6             I 2 C 0
s proCoq1.NW_012149775v1      705858 47 +   1411461 tgcctgccaacctcacctGCGGGGCTCGTGCTCTCTCCGTCCCCGAT
i proCoq1.NW_012149775v1   n 78 C 0
s otoGar3.GL873550          18129885 47 -  18854210 TGCCTATCAACCTCACCTCCTGGGCTCGTGCTCTCTCCGTCCCCGAT
i otoGar3.GL873550         I 2 C 0
s mm10.chr17                35969634 42 +  94987271 TCCCCA-----CTCACCCGCGGGGCTCGTGCCCTCGCCGTCCCCGAT
i mm10.chr17               C 0 C 0
s canFam3.chr12             72100952 47 -  72498081 TGCCTATCAGCCTCACCGGTGGGGCTCGAACTCTCTCCGTCCCCGAT
i canFam3.chr12            C 0 I 5

a score=98600.000000
s hg38.chr6_GL000254v2_alt   1915068 5 +   4827813 CCACT
s panTro5.chr6              30760754 5 + 175400573 CCACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31184363 5 + 173848474 CCACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      691358 5 +   2037526 CCACT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75357360 5 + 122973662 CCATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              31271600 5 + 172585720 CCACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              30560445 5 - 170955103 CCACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      856504 5 +   1495729 CCACT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1       79835 5 -    811324 CCACT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17             30110733 5 -  71996105 CCACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      117367 5 +    779361 CCACT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1      780447 5 -   1829203 CCACT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30945437 5 + 171630274 CCACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            114490 5 -    750284 CCACT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1     1359802 5 -   1771730 CCACT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       62512 5 -    566255 CCACT
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6             122719246 5 - 123392446 CCACT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1      705905 5 +   1411461 CCACT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550          18129932 5 -  18854210 CCACT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                35969676 5 +  94987271 CCACT
i mm10.chr17               C 0 C 0
s canFam3.chr12               396703 5 +  72498081 CCACT
i canFam3.chr12            C 0 C 0

a score=771690.000000
s hg38.chr6_GL000254v2_alt   1915073 46 +   4827813 CGGGCTCC--GGCAGCTGCTGCTTGGGCGCCTTCG-GCATCGCGGTGGC
s panTro5.chr6              30760759 46 + 175400573 CGGGCTCC--GGCAGCTGCTGCTTGGGCGCCTTCG-GCATCGCGGTGGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31184368 46 + 173848474 CGGGCTCC--GGCAGCTGCTGCTTGGGCGCCTTCG-GCATCGCGGTGGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      691363 46 +   2037526 CGGGCTCC--GGCAGCTGCTGCTTGGGCGCCTTCG-GCATAGCGGTGGC
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75357365 46 + 122973662 CGGGCTCC--GGCAGCTGCTGCTTGGGCGCCTTCG-GCATCGCGGTGGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              31271605 46 + 172585720 CGGGCTCC--GGCGGCTGCTGCTTGGGCGCCTTTG-GCATCGCGGTGGC
i rheMac8.chr4             C 0 I 4
s macFas5.chr4              30560450 46 - 170955103 CGGGCTCC--GGCGGCTGCTGCTTGGGCGCCATTG-GCATCGCGGTGGC
i macFas5.chr4             C 0 I 4
s macNem1.NW_012012100v1      856509 46 +   1495729 CGGGCTCC--GGCGGCTGCTGCTTGGGCGCCTTTG-GCATCGCGGTGGC
i macNem1.NW_012012100v1   C 0 I 4
s cerAty1.NW_012002513v1       79840 46 -    811324 CGGGCTCC--GGCGGCTGCTGCTTGGGCGCCTTTG-GCATCGCGGTGGC
i cerAty1.NW_012002513v1   C 0 I 4
s chlSab2.chr17             30110738 46 -  71996105 CGGGCTCC--GGCGGCTGCTGCTTGGGCGCCTTCG-GCATCGCGGTGGC
i chlSab2.chr17            C 0 I 4
s manLeu1.NW_012106264v1      117372 46 +    779361 CGGGCTCC--GGCGGCTGCTGCTTGGGCGCCTTTG-GCATCGCGGTGGC
i manLeu1.NW_012106264v1   C 0 I 4
s colAng1.NW_012115577v1      780452 46 -   1829203 CGGGCTCC--GGCGGCTGCTGCTTGGGCGCCTTCG-GCATCGCGGTGGC
i colAng1.NW_012115577v1   C 0 I 4
s calJac3.chr4              30945442 47 + 171630274 CGGGCTCT--GGCGGCTGCTGTTTGGGCACCTTCGAGCATTGTGGTGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            114495 49 -    750284 GGGGCTTTAGGGCGGCTGCTGCTTGGGCGCCTTCGAGCATTGCGGTGGC
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1     1359807 47 -   1771730 CGGGCTCT--GGCGGCTGCTGCTTGGGCTCCTTCGAGCATTGCGGTGGC
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       62517 47 -    566255 CGGGCTCT--GGCGGCTGCTGCTTGGGAGGCTTCGAGCATTGCGGTGGC
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6             122719251 46 - 123392446 CGGGCTCT--GGAGGATGCTGCTTGGGACCCTTCG-GCATCGCGGTGGC
i micMur3.chr6             C 0 n 0
s proCoq1.NW_012149775v1      705910 46 +   1411461 CGGGCTCT--GGAGGCTGCTGCTTGGGACCCTTCG-GCATCGCGGTGGC
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550          18129937 46 -  18854210 CGGGTTCC--GGCGGCTGCTGCTTGGGACCCTTCG-GCATCGCGGTGGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                35969681 46 +  94987271 CGGGCTCG--GGCGGCTGTTGCTTGGGACCCTTCG-GCATCGCGGCGGC
i mm10.chr17               C 0 C 0
s canFam3.chr12             72101004 46 -  72498081 CGGGCTCC--GGCGGCTGCTGCCTAGGTCCCTTCG-GCATCGCGGTGGC
i canFam3.chr12            I 5 C 0

a score=36290.000000
s hg38.chr6_GL000254v2_alt   1915119 2 +   4827813 AG
s panTro5.chr6              30760805 2 + 175400573 AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31184414 2 + 173848474 AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      691409 2 +   2037526 AG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75357411 2 + 122973662 AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              31271655 2 + 172585720 AG
i rheMac8.chr4             I 4 C 0
s macFas5.chr4              30560500 2 - 170955103 AG
i macFas5.chr4             I 4 C 0
s macNem1.NW_012012100v1      856559 2 +   1495729 AG
i macNem1.NW_012012100v1   I 4 C 0
s cerAty1.NW_012002513v1       79890 2 -    811324 AG
i cerAty1.NW_012002513v1   I 4 C 0
s chlSab2.chr17             30110788 2 -  71996105 AG
i chlSab2.chr17            I 4 C 0
s manLeu1.NW_012106264v1      117422 2 +    779361 AG
i manLeu1.NW_012106264v1   I 4 C 0
s colAng1.NW_012115577v1      780502 2 -   1829203 AG
i colAng1.NW_012115577v1   I 4 C 0
s calJac3.chr4              30945489 2 + 171630274 AG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            114544 2 -    750284 AG
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1     1359854 2 -   1771730 ag
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       62564 2 -    566255 AG
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1      705956 2 +   1411461 AG
i proCoq1.NW_012149775v1   C 0 n 0
s otoGar3.GL873550          18129983 2 -  18854210 AG
i otoGar3.GL873550         C 0 n 0
s mm10.chr17                35969727 2 +  94987271 AG
i mm10.chr17               C 0 n 0
s canFam3.chr12             72101050 2 -  72498081 AG
i canFam3.chr12            C 0 T 1322
e micMur3.chr6             122719297 0 - 123392446 I

a score=38545.000000
s hg38.chr6_GL000254v2_alt   1915121 4 +   4827813 AACT
s panTro5.chr6              30760807 4 + 175400573 AACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31184416 4 + 173848474 AACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      691411 4 +   2037526 AACT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75357413 4 + 122973662 AGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              31271657 4 + 172585720 AGCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              30560502 4 - 170955103 AGCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      856561 4 +   1495729 AGCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1       79892 4 -    811324 AGCT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17             30110790 4 -  71996105 AGCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      117424 4 +    779361 AGCT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1      780504 4 -   1829203 AGCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30945491 4 + 171630274 AGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            114546 4 -    750284 AGCT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1     1359856 4 -   1771730 aact
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       62566 4 -    566255 AGCT
i aotNan1.NW_018511496v1   C 0 C 0
e micMur3.chr6             122719297 0 - 123392446 I
e mm10.chr17                35969729 0 +  94987271 I
e proCoq1.NW_012149775v1      705958 0 +   1411461 I
e canFam3.chr12             72101052 1322 -  72498081 T
e otoGar3.GL873550          18129985 0 -  18854210 I

a score=253980.000000
s hg38.chr6_GL000254v2_alt   1915125 25 +   4827813 AGAAAC--GAGTTACAGATAGAAACTA
s panTro5.chr6              30760811 25 + 175400573 AGTAAC--GAGTTACAGATAGAAACTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31184420 25 + 173848474 AGAAAC--GAGTTACAGATAGAAACTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      691415 25 +   2037526 AGAAAC--GAGTTACAGATAGAAACTA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75357417 27 + 122973662 AGAAACGAGAGTTACAGATAGAAACCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              31271661 27 + 172585720 AGAAACGAGAGTTACAGATAGAAACTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              30560506 27 - 170955103 AGAAACGAGAGTTACAGATAGAAACTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      856565 27 +   1495729 AGAAACGAGAGTTACAGATAGAAACTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1       79896 27 -    811324 AGAAACGAGAGTTACAGATAGAAACTA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17             30110794 27 -  71996105 AGAAACGAGAGTTACAGATAGAAACTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      117428 27 +    779361 AGAAACGAGAGTTACAGATAGAAACTA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1      780508 27 -   1829203 AGAAACGAGAGTTACAGATAGAAACTA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30945495 27 + 171630274 AGACACGAGAGTTAGAGATAGAAACTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            114550 27 -    750284 AGACACGAGAGTTAGAGATAGAAACTA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1     1359860 27 -   1771730 agacacgagagttagagatagaaacta
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       62570 27 -    566255 AGACACGAGAGTTAGAGATAGAAACTA
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550            723856 25 +  18854210 --AGACGTAAATGTAAGGTAGAAGATA
i otoGar3.GL873550         C 0 C 0
e micMur3.chr6             122719297  0 - 123392446 I
e mm10.chr17                35969729  0 +  94987271 I
e proCoq1.NW_012149775v1      705958  0 +   1411461 I
e canFam3.chr12             72101052 1322 -  72498081 T

a score=102271.000000
s hg38.chr6_GL000254v2_alt   1915150 45 +   4827813 GAATATGCTTTTTaaaaaaacaaaaaacaaaacaaac-------aaaaaaac--
s panTro5.chr6              30760836 48 + 175400573 GAATATGCTTTTTTaaaaaacaaaaaacaaaacaaac----aaaaaaaaaaC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6              31184445 47 + 173848474 GAATATGCTTTTTTaaaaaacaaaaaacaaaacaaac-----aaaaaaaaaC--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1      691440 52 +   2037526 GAATATGCTTTCTaaaaaaacaaaaaacaaaacaaacaaacaaaaaaaaaaC--
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a             75357444 42 + 122973662 GAATATGCTTTTTTaaaaaacaaaaaacaa---caac-------aaaaaaaC--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4              31271688 21 + 172585720 GAATATGCTT------------------------AAA-------AAAAAAAA--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4              30560533 21 - 170955103 GAATATGCTT------------------------AAA-------AAAAAAAA--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1      856592 21 +   1495729 GAATATGCTT------------------------TAA-------AAAAAAAA--
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1       79923 22 -    811324 GAATATGCTT-----------------------AAAA-------AAAAAAAA--
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17             30110821 24 -  71996105 GAATATGCTTT---------------------AAAAA-------AAAAAAAA--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1      117455 22 +    779361 GAATATGCTT-----------------------AAAA-------AAAAAAAA--
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1      780535 23 -   1829203 GAATATGCTT----------------------TAAAA-------AAAAAAAA--
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4              30945522 25 + 171630274 GAATATGCTT--------------------TAAAAAA-------AAAAAAAA--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327            114577 25 -    750284 GAATATGCtt--------------------taaaaaa-------aaaaaaaa--
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1     1359887 25 -   1771730 gaaTATACTT--------------------AAAAAAA-------AAAAAAAA--
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1       62597 25 -    566255 GAATATGCTT--------------------TAAAAAA-------ACAAAAAA--
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550            723881 19 +  18854210 GCATCTGCTT------------------------TAA-------AAAAGA----
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12               396708 28 +  72498081 GAAAATGCAA-------------------AAGCAAAC-------AAAACAAGCA
i canFam3.chr12            C 0 C 0
e micMur3.chr6             122719297  0 - 123392446 I
e mm10.chr17                35969729  0 +  94987271 I
e proCoq1.NW_012149775v1      705958  0 +   1411461 I

a score=135788.000000
s hg38.chr6_GL000254v2_alt  1915195 12 +   4827813 a----GTATGCCTCAA
s panTro5.chr6             30760884 12 + 175400573 A----GTATGCCTCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31184492 12 + 173848474 A----GTATGCCTCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     691492 12 +   2037526 A----GTATGCCTCAA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75357486 12 + 122973662 A----GTATGCCTCAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             31271709 12 + 172585720 A----GTATGCCTCAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30560554 12 - 170955103 A----GTATGCCTCAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     856613 12 +   1495729 A----GTATGCCTCAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      79945 12 -    811324 A----GTATGCCTCAA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30110845 12 -  71996105 A----GTATGCCTCAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     117477 12 +    779361 A----GTATGCCTCAA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     780558 12 -   1829203 A----GTATGCCTCAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30945547 10 + 171630274 A------AAGCCTCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           114602 16 -    750284 aaaaaGGAAGCCTCAA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1359912 12 -   1771730 A----GTATGCCTCAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      62622 11 -    566255 G-----TATGCCTCAA
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               672818 12 + 123392446 A----GTATGCTTCAA
i micMur3.chr6             I 748 C 0
s proCoq1.NW_012149775v1     705169 12 -   1411461 A----GTATGCTTCAA
i proCoq1.NW_012149775v1   I 78 C 0
s otoGar3.GL873550           723900 12 +  18854210 A----ATATGCTTCAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              396736  8 +  72498081 --------TTCCTCTT
i canFam3.chr12            C 0 C 0
e mm10.chr17               35969729  0 +  94987271 I

a score=961627.000000
s hg38.chr6_GL000254v2_alt  1915207 76 +   4827813 CTCCTTCATACTAGTAGGAAATTATTATGTT-CATTCCTTGAGTCTCGCGGCGTCGGGAGG----------------TCA-CGGCGTCAGGCTT
s panTro5.chr6             30760896 76 + 175400573 CTCCTTCATACTAGTAGGAAATTATTATGTT-CATTCCTTGAGTCTCGCGGCGTCGGGAGG----------------TCA-CGGCGTCAGGCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31184504 76 + 173848474 CTCCTTCATACTAGTAGGAAATTATTATGTT-CATTCCTTGAGTCTCGCGGCGTCGGGAGG----------------TCA-CGGCGTCAGGCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     691504 76 +   2037526 CTCCTTCATACTAGTAGGAAATTATTATGTT-CATTCCTTGAGTCTCGCGGCGTCGGGAGG----------------TCA-CGGCGTCAGGCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            75357498 76 + 122973662 CTCCTTCATACTAGTAGGAAATTATCATGTT-CATTCCTTGAGTCTCGCGGCGTCGGGAGG----------------TCA-CGGCGTCAGGCTT
i nomLeu3.chr1a            C 0 M 2012
s rheMac8.chr4             31271721 79 + 172585720 CTCCTTCATACTAGTAGGAAATTATTATGGT-CATTCCTGGAGTCTCGCGGCGTCCCGAGG--------------GTTCACCGGCGTCAGGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30560566 76 - 170955103 CTCCTTCATACTAGTAGGAAATTATTATGGT-CATTCCTGGAGTCTCGCGGCGTCGGGAGG----------------TCA-CGGCGTCAGGCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     856625 76 +   1495729 CTCCTTCATACTAGTAGGAAATTATTATGGT-CATTCCTGGAGTCTCGCGGCGTCGGGAGG----------------TCA-CGGCGTCAGGCTT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      79957 76 -    811324 CTCCTTCATACTAGTAGGAAATTATTATGGT-CATTCCTGGAGTCTCGCGGCGTCGGGAGA----------------TCA-CGGCGTCAGGCTT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30110857 76 -  71996105 CTCCTTCATACTAGTAGGAAATTATTATGGT-CATTCCTGGAGTCTCGCGGCGTCGGGAGG----------------TCA-CGGCGTCAGGCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     117489 76 +    779361 CTCCTTCATACTAGTAGGAAATTATTATGGT-CATTCCTGGAGTCTCGCGGCGTCGGGAGG----------------TCA-CGGCGTCAGGCTT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     780570 92 -   1829203 CTCCTTCATACTAGTAGGAAATTATTATGGT-CATTCCTTCAGTCTCGCGGCGTCGGGAGGTCGCGGCGTCGGGAGGTCA-CGGCGTCAGGCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30945557 77 + 171630274 CACCTTCATACTAGTCCGAAATTATTATGTTCCATTTCTTGAGTCAGGAGGCGTCGGGAGG----------------TCA-CGGGAAAAGGCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           114618 76 -    750284 CTCCTTCAAAGTAGTCCGAAATTATTAAGTT-CATTTCTTGAGTCTCGCGGCGTCAGGAGG----------------TCA-CGGGGTCAGGCGT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1359924 73 -   1771730 CTCCTTCAAAGTAGTCCGAAATTAT---GTT-CATTTCTTGAGTCTCGCGGCGTCGGGAGG----------------TCA-CGGGGTCAGGCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      62633 76 -    566255 CTCCTTCATACTAGTCCGAAATTATTATGTT-CATTTCTTGAGTCTCGCGGCGTCGGAAGG----------------TCA-CGAGGTCAGGCTT
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               672830 75 + 123392446 CTCTTTGATACTAGTTGG-AATTGTGATGTT-CATTCCTTTAGTCTCGCGGCGTCGCAGGG----------------TCA-CCGGGTCAGGCTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     705181 75 -   1411461 CTCCTTCGTACTAGTTGG-AATTATGATGTT-CATTCCTTTAGTCTCGCGGCGTCCCAGGG----------------TCA-CCGGATCAGCCTT
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           723912 76 +  18854210 CTCTTTCATATTAGTAGGAAATTATTATGTT-CATTCCTTTAGTCTCGCAGCGTCGCAGGA----------------TAA-CCAGGTCAGGTTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59017252 66 -  94987271 ctACTTCTGCCTACCTGGAAATTACCATGTC-C-TTCTTTGAGTGTCACCGCGTCGCAGCA----------------TCA----------GCTG
i mm10.chr17               I 509 C 0
s canFam3.chr12              396744 74 +  72498081 CTCCTTCGGCCTAGTCCTAAATTACTCTGTT-CGGTACTCG-GTGACGCAACGTCATCGAG----------------TCA-CGACCCAATATT-
i canFam3.chr12            C 0 C 0

a score=98559.000000
s hg38.chr6_GL000254v2_alt  1915283 6 +   4827813 CCCAGA
s panTro5.chr6             30760972 6 + 175400573 CCCAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31184580 6 + 173848474 CCCAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     691580 6 +   2037526 CCCAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31271800 6 + 172585720 CCCAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30560642 6 - 170955103 CCCAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     856701 6 +   1495729 CCCAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      80033 6 -    811324 CCCAGA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30110933 6 -  71996105 CCCAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     117565 6 +    779361 CCCAGA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     780662 6 -   1829203 CCCAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30945634 6 + 171630274 CCCAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           114694 6 -    750284 CCCAGA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1359997 6 -   1771730 CCCAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      62709 6 -    566255 CCCAGA
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               672905 6 + 123392446 CCCAGA
i micMur3.chr6             C 0 I 180
s proCoq1.NW_012149775v1     705256 6 -   1411461 CTCAGA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           723988 6 +  18854210 TCCAGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59017318 6 -  94987271 CTTAGG
i mm10.chr17               C 0 C 0
s canFam3.chr12              396818 6 +  72498081 CCCAGA
i canFam3.chr12            C 0 C 0
e nomLeu3.chr1a            75357574 2012 + 122973662 M

a score=213023.000000
s hg38.chr6_GL000254v2_alt  1915289 28 +   4827813 C-AGTCG-TAAACGCCATGTGTTTACGCGA
s panTro5.chr6             30760978 28 + 175400573 C-AGTCG-TAAACGCCATGTGTTTACGCGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31184586 28 + 173848474 C-AGTCG-TAAACGCCATGTGTTTACGCGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     691586 28 +   2037526 C-AGTCG-TAAACGCCATGTGTTTACGCGA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31271806 28 + 172585720 CGCGTCGATAAACGCCATGTG--GACGCGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30560648 26 - 170955103 C-CGTCG-TAAACGCCATGTG--GACGCGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     856707 26 +   1495729 C-CGTCG-TAAACGCCATGTG--GACGCGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      80039 26 -    811324 C-CGTCG-TAAACGCCATGTG--GACGCGA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30110939 26 -  71996105 C-CGTCG-TAAACGCCATGTG--GACGCGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     117571 26 +    779361 C-CGTCG-TAAACGCCATGTG--GACGCGA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     780668 26 -   1829203 C-CGTCG-TAAACGCCATGTG--GACGCGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30945640 26 + 171630274 C-AGTAG-TAAACGCCGTGTG--GACTCTA
i calJac3.chr4             C 0 I 6
s saiBol1.JH378327           114700 26 -    750284 C-AGTCG-TAAACGCCGTGCG--GACGCTA
i saiBol1.JH378327         C 0 I 6
s cebCap1.NW_016107755v1    1360003 26 -   1771730 C-AGTCG-TAAACGCCGTGTG--GACGCTA
i cebCap1.NW_016107755v1   C 0 I 22
s aotNan1.NW_018511496v1      62715 26 -    566255 C-AGTCG-TAAACGCCGTGCG--GACGCTA
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     705262 26 -   1411461 A-GGTCG-TAAATGCTGCGCG--GACGCGA
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           723994 26 +  18854210 C-TGTCA-TAAATGCTCTGCG--GACGCCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59017324 21 -  94987271 --CGTTG-GGACGGTCAT-----GACGCG-
i mm10.chr17               C 0 C 0
s canFam3.chr12              396824 26 +  72498081 -AAGCCC-ACGGCGCCGTGCT--GACGTCG
i canFam3.chr12            C 0 C 0
e micMur3.chr6               672911 180 + 123392446 I
e nomLeu3.chr1a            75357574 2012 + 122973662 M

a score=20903.000000
s hg38.chr6_GL000254v2_alt  1915317 3 +   4827813 CTG
s panTro5.chr6             30761006 3 + 175400573 CTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31184614 3 + 173848474 CTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     691614 3 +   2037526 CTG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31271834 3 + 172585720 CTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30560674 3 - 170955103 CTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     856733 3 +   1495729 CTA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      80065 3 -    811324 CTA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30110965 3 -  71996105 CTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     117597 3 +    779361 CTA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     780694 3 -   1829203 CTG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30945672 3 + 171630274 CAG
i calJac3.chr4             I 6 I 13
s saiBol1.JH378327           114732 3 -    750284 CAG
i saiBol1.JH378327         I 6 I 13
s aotNan1.NW_018511496v1      62741 3 -    566255 CCG
i aotNan1.NW_018511496v1   C 0 I 19
s proCoq1.NW_012149775v1     705288 3 -   1411461 CCG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           724020 3 +  18854210 CGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59017345 3 -  94987271 CTG
i mm10.chr17               C 0 C 0
s canFam3.chr12              396850 3 +  72498081 CTA
i canFam3.chr12            C 0 C 0
e micMur3.chr6               672911 180 + 123392446 I
e cebCap1.NW_016107755v1    1360029 22 -   1771730 I
e nomLeu3.chr1a            75357574 2012 + 122973662 M

a score=1390620.000000
s hg38.chr6_GL000254v2_alt  1915320 146 +   4827813 GAGCAAGCGGACG--CCGGCCCCGCTCCGT------CATTGCAGGCCACGCCTCCA---CTGAACCAGGGCCACGCC------CCCGAGATGACGGCGAAGCTC-GCA-CGTGCGCAGCC---------CGGGGGCGGGGTTGGCCGCGCCAGCTTGGAGAGCCAGCCCCATCG
s panTro5.chr6             30761009 146 + 175400573 GAGCAAGCGGACG--CCGGCCCCGCCCCGT------CATTGCAGGCCACGCCTCCA---CTGAACCAGGGCCACGCC------CCCGAGATGACGGCGAAGCTC-GCA-CGTGCGCAGCC---------CGGGGGCGGGGTTGGCCGCGCCAGCTTGGAGAGCCAGCCCCATCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31184617 146 + 173848474 GAGCAAGCGGACG--CCGGCCCCGCCCCGT------CATTGCAGGCCACGCCTCCA---CTGAACCAGGGCCACGCC------CCCGAGATGACGGCGAAGCTC-GCA-CGTGCGCAGCC---------CGGGGGCGGGGTTGGCCGCGCCAGCTTGGAGAGCCAGCCCCATCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     691617 146 +   2037526 GAGCAAGCGGACG--CCGGCCCCGCCCCGT------CATTGCAGGCCACGCCTCCA---CTGAACCAGGGCCACGCC------CCCGAGATGACGGCGAAGCTC-GCA-CGTGCGCAGCC---------CGGGGGCGGGGTTGGCCGCGCCAGCTTGGAGAGCCAGCCCCATCG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31271837 147 + 172585720 GAGTAGGCGGACGCCCCGGCCCCG-CCCGT------CATTGCA-GCCACGCCTCCA---CTGTACCAGGGCCACGCC------CCCGAGATGACGGCGAAGCTCGGCACCGTGCGCAGCC---------C-GGGGTGGGGTTGGCCGCGGCGGCTTGGAGAACCAGCCCCATCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30560677 145 - 170955103 GAGTAGGCGGACG--CCGGCCCCGCCCCGT------CATTGCAGGCCACGCCTCCA---CTGTACCAGGGCCACGCC------CCCGAGATGACGGTGAAGCTC-GCA-CGTGCGCAGCC---------C-GGGGTGGGGTTGGCCGCGGCGGCTTGGAGAACCAGCCCCATCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     856736 145 +   1495729 CAGTAGGCGGACG--CCGGCCCCGCCCCGT------CATTGCAGGCCACGCCTCCA---CTGTACCAGGGCCACGCC------CCCGAGATGACGGCGAAGCTC-GCA-CGTGCGCAGCC---------G-GGGGTGGGGTTGGCCGCGGCGGCTTGGAGAACCAGCCCCATCG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      80068 145 -    811324 GAGTAGGCGGACG--CCGGCCCCGCCCCGT------CATTGCAGGCCACGCCTCCA---CTGTACCGGGGCCACGCC------CCCGAGATGACGGCGAAGCTC-GCA-CGTGCGCAGCC---------C-GGGGTGGGGTTGGCCGCGGCGGCTTGGAGAACCAGCCCCATCG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30110968 145 -  71996105 GAGTAGGCGGACG--CCGGCCCCGCCCCGT------CATTGCAGGCCACGCCTCCA---CTGTACCAGGGCCACGCC------CCCGAGATGACGGCGAAGCTC-GCA-CGTGCGCAGCC---------C-GGGGTGGGGTTGGCCGCGGCGGCTGGGAGAACCAGCCTCATCG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     117600 145 +    779361 GAGTAGGCGGACG--CCGGCCCCGCCCCGT------CATTGCAGGCCACGCCTCCA---CTGTACCAGGGCCACGCC------CCCGAGATGACGGCGAAGCTC-GCA-CGTGCGCAGCC---------C-GGGGTGGGGTTGGCCGCGGCGGCTTGGAGAACCAGCCCCATCT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     780697 145 -   1829203 GAGTAGGCGGACG--CCGGCCCCGCCCCGT------CATTGCAGGCCACGCCTCCA---CTGCACCAGGGCCACGCC------CCCGAGATGACGGCGAAGCTC-GCA-CGTGCGCAGCC---------C-GGGGTGGGGTTGGCCGCGGCGGCTTGGAGAGCCAGCCCCATCG
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30945688 146 + 171630274 GAGCAGGGGGACG--CCGTCCCCGCCCCGT------CATTTCAGGTCTCGCCTGCA---TGGGACTAGGACCTTGTC------TTTGAGAAGAATACAAAACTC-GCA-CGTGCGCAGCC---------CGGGGGCGGGGTTGGCCGCGCCGGCGTAGAGAGCCCGCCCCGTCG
i calJac3.chr4             I 13 I 2
s saiBol1.JH378327           114748 142 -    750284 GAGCGGGAGGAGG--CCGGCCCCGCCCCGT------CATTGCAGGCCACGCCTCCA---TGAGACCGGGACCTTGGC------TCT---AAGACTGCAAAACTC-GCA-CGTGCGCAGCC---------C-GGGGCGGGGTTGGCCGCGCCGGAGTAGAGAGCCCACCCCGTCG
i saiBol1.JH378327         I 13 I 2
s cebCap1.NW_016107755v1    1360051 146 -   1771730 GAGCAGTCGGACG--CCGGCCCCGCCCCGT------CATTGCAGGCCACGCCTCCA---CGGGACCAGGACCTTGGC------TCTGAGAAGACTACAAAACTC-GCA-CGTGCGCCTCC---------CGGGGGCGGGGTTGGCCGCGCCGGCGTAGAGAGTCCGCCCCATCG
i cebCap1.NW_016107755v1   I 22 I 2
s aotNan1.NW_018511496v1      62763 143 -    566255 GAGCAGGCGGACG--CCAGCCCCGCCCCGT------CATTGCAGGCCACGCCTCCA---CGGGACCAGGACCTTGGC------TCT---GAGACTACAAAACTC-GCA-CGTGCGCAGCC---------CGGGGGCGGGGTTGGCCGCGCCGGCGTAGAGAGCCCGCCCCGTCG
i aotNan1.NW_018511496v1   I 19 I 2
s proCoq1.NW_012149775v1     705291 155 -   1411461 GAGCAGGTGGACG--CCGGCCCCGCCCCGT------CATTGAAGGCCACGCCTCCA---TCGGGCTGCAACCACGCC------CCCGAGATGACGGCGGTGCTC-ACA-CTTGTGCCTCAGGGGTGGGGCCAAGGCGGGGGCGGGCGTGCGGGCGTGGAGAGCCCGCCCCTTTC
i proCoq1.NW_012149775v1   C 0 I 1
s otoGar3.GL873550           724023 145 +  18854210 GAACAGGTGGACA--CCAGCCCCGCCCTGT------CATTGAAAGCCACGCCTACA---GCGGGCTGCGGTCACGCC------CCCAAGGTGACAGCATTGCTC-GCA-CGTGTGCCTCA---CCCGGGCGGAGGCGGGGGCGGGCGTA-------GGACAGCCCGCCCCATTC
i otoGar3.GL873550         C 0 I 1
s mm10.chr17               59017348 138 -  94987271 --------------CCCACTCCAGTCAAGTAGGTGACGTCTCTGGCCACACCCCCAAAGCCGCAATGCCGCCACGCCCCTTTGCCCCACGTGTCTGCGCAGCAG-AC--CCTCCGCGGGT---------C-GGGGCGGAG---------CCTACATGGAGAGCCCGCCCACTGG
i mm10.chr17               C 0 C 0
s canFam3.chr12              396853 120 +  72498081 -CCGCGGCGCACG--CTGGCCCCGCCCAGT------GGCCGCGGG---------CA-----------------CGCC------CCCGAGGTGAC-GCGCCGTGC-GCA-CGTGCACCGCG---------C-GGGACAGGCCCGGCGGCCGCGGAGTGGAGAGCCCGCCCCGTCC
i canFam3.chr12            C 0 C 0
e micMur3.chr6               672911 180 + 123392446 I
e nomLeu3.chr1a            75357574 2012 + 122973662 M

a score=823672.000000
s hg38.chr6_GL000254v2_alt  1915466 56 +   4827813 GGGTTCCCCGCCGCCGGAAGCGGAAATAGCACCGGGCGCCGCCACAGTAGCTGTAA
s panTro5.chr6             30761155 56 + 175400573 GGGTTCCCCGCCGCCGGAAGCGGAAATAGCACCGGGCGCCGCCACAGTAGCTGTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31184763 56 + 173848474 GGGTTCCCCGCCGCCGGAAGCGGAAATAGCACCGGGCGCCGCCACAGTAGCTGTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     691763 56 +   2037526 GGGTTCCCCGCCGCCGGAAGCGGAAATAGCGCCGGGCGCCGCCACAGTAGCTGTAA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31271984 56 + 172585720 GGGTTCCCCGCCGCCGGAAGCGGAAATAGCACTGGGCGCCGCCACAGCAGCTGTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30560822 56 - 170955103 GGGTTCCCCGCCGCCGGAAGCGGAAATAGCACTGGGCGCCGCCACAGCAGCTGTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     856881 56 +   1495729 GGGTTCCCCGCCGCCGGAAGCGGAAATAGCACTGGGCGCCGCCACAGCAGCTGTAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      80213 56 -    811324 GGGTTCCCCGCCGCCGGAAGCGGAAATAGCACTGGGCGCCGCCACAGCAGCTGTAA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30111113 56 -  71996105 GGGTTCCCCGCCGCCGGAAGCGGAAATAGCACTGGGCGCCGCCACAGCAGCTGTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     117745 56 +    779361 GGGTTCCCCGCCGCCGGAAGCGGAAATAGCACTGGGCGCCGCCACAGCAGCTGTAA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     780842 56 -   1829203 GGGTTCCCCGCCGCCGGAAGCGGAAATAGCACCGGGCGCCGCCACAGTAGCTGTAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30945836 56 + 171630274 GGGTTTCACGCCGCCGGAAGCGGAAATAGCACCGGGTGCCGCCACAGTAGCTGTAA
i calJac3.chr4             I 2 C 0
s saiBol1.JH378327           114892 56 -    750284 GGGTTCCACACCGCCGGAAGCGGAAATAGCACCGGGTGCCGCCACAGTAGCTGTAA
i saiBol1.JH378327         I 2 C 0
s cebCap1.NW_016107755v1    1360199 56 -   1771730 GAGTTCCACGCCGCCGGAAGCGGAAATAGCACAGGGTGCCGCCACAGTAGCTGTAA
i cebCap1.NW_016107755v1   I 2 C 0
s aotNan1.NW_018511496v1      62908 56 -    566255 GGGTTCCACGCCGCCGGAAGCGGAAATAGCACCGGGTGCCGCCACAGTTTCTGTAA
i aotNan1.NW_018511496v1   I 2 C 0
s micMur3.chr6               673091 56 + 123392446 GGGCTCCCTGCCGCCGGAAGCGGAAATAGCACCGGGCGCCGCCAGGGTATCCGTAA
i micMur3.chr6             I 180 C 0
s proCoq1.NW_012149775v1     705447 56 -   1411461 GGGCTCCATGCCGCCGGAAACGGAAATAGCACCGGGCGCCGCCAGGGTATCCGTAA
i proCoq1.NW_012149775v1   I 1 C 0
s otoGar3.GL873550           724169 56 +  18854210 AGGCTCCATGCCTCCGGAAGCGGAAATAGCACCGGGCGCTGCCACAGTATCGGTAA
i otoGar3.GL873550         I 1 C 0
s mm10.chr17               59017486 56 -  94987271 CCGGCCCACATCGCCGGAAGCGGAAACGGCGCCGGGCGCCGCTGGAGGACTCTTAA
i mm10.chr17               C 0 C 0
s canFam3.chr12              396973 56 +  72498081 GGACCCCACGCTGCCGGAAGCGGAAATAGCGCCCGGCGTGCCCGGGGTACCTGTAA
i canFam3.chr12            C 0 C 0
e nomLeu3.chr1a            75357574 2012 + 122973662 M

a score=1816340.000000
s hg38.chr6_GL000254v2_alt  1915522 100 +   4827813 CTGCCACCGCGATGCCGAAGGCGCCCAAGCAGCAGCCGCCGGAGCCCGAGTGGATCGGGGACGGAGAGAGCACGAGCCCATCAGGTGAGGCTGGTAGGCA
s panTro5.chr6             30761211 100 + 175400573 CTGCCACCGCGATGCCGAAGGCGCCCAAGCAGCAGCCGCCGGAGCCCGAGTGGATCGGGGACGGAGAGAGCACGAGCCCATCAGGTGAGGCTGGTAGGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31184819 100 + 173848474 CTGCCACCGCGATGCCGAAGGCGCCCAAGCAGCAGCCGCCGGAGCCCGAGTGGATCGGGGACGGAGAGAGCACGAGCCCATCAGGTGAGGCTGGTAGGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     691819 100 +   2037526 CTGCCACCGCGATGCCGAAGGCGCCCAAGCAGCAGCCGCCGGAGCCCGAGTGGATCGGGGACGGAGAGAGCACGAGCCCATCAGGTGAGGCTGGTAGGCA
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            47616249 100 - 122973662 CTGCCACCGCGATGCCGAAGGCGCCCAAGCAGCAGCTGCCGGAGCCCGAATGGATCGGGGACGGAGAGAACACGAGCCCATCAGGTGAGGCTGGTAGGCA
i nomLeu3.chr1a            n 0 C 0
s rheMac8.chr4             31272040 100 + 172585720 CTGCCACCGCGATGCCGAAGGCGCCCAAGCAGCAGCCGCCGGAGCCCGAGTGGATCGGGGACGGAGAGAGCACGAGCCCATCAGGTGAGGCTGGTAGGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30560878 100 - 170955103 CTGCCACCGCGATGCCGAAGGCGCCCAAGCAGCAGCCGCCGGAGCCCGAGTGGATCGGGGACGGAGAGAGCACGAGCCCATCAGGTGAGGCTGGTAGGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     856937 100 +   1495729 CTGCCACCGCGATGCCGAAGGCGCCCAAGCAGCAGCCGCCGGAGCCCGAGTGGATCGGGGACGGAGAGAGCACGAGCCCATCAGGTGAGGCTGGTAGGCA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      80269 100 -    811324 CTGCCACCGCGATGCCGAAGGCGCCCAAGCAGCAGCCGCCGGAGCCCGAGTGGATCGGGGACGGAGAGAGCACGAGCCCATCAGGTGAGGCTGGTAGGCA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30111169 100 -  71996105 CTGCTACCGCGATGCCGAAGGCGCCCAAGCAGCAGCCGCCGGAGCCCGAGTGGATCGGGGACGGAGAGAGCACGAGCCCATCAGGTGAGGCTGGTAGGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     117801 100 +    779361 CTGCCACCGCGATGCCGAAGGCGCCCAAGCAGCAGCCGCCGGAGCCCGAGTGGATCGGGGACGGAGAGAGCACGAGCCCATCAGGTGAGGCTGGTAGGCA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     780898 100 -   1829203 CTGCCACCGCGATGCCGAAGGCGCCCAAGCAGCAGCCGCCGGAGCCCGAGTGGATCGGGGACGGAGAGAACACGAGCCCATCAGGTGAGGCTGGTAGGCA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30945892 100 + 171630274 CCGCCACCGCGATGCCGAAGGGGCCCAAGCAGCAGCCGCCGGAGCCCGAGTGGATCGGGGACGGAGAGAGCACAAACCCATCAGGTGAGGCTGTTAGGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           114948 100 -    750284 CCGCCACCGCGATGCCGAAAGGGCCCAAGCAGCAGCCGCCGGAGCCCGAGTGGATCGGGGACGGAGAGAGCACGAGCCCATCAGGTGAGGCTGTTAGGCA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1360255 100 -   1771730 CCGCCACCGCGATGCCGAAGGGGCCCAAGCAGCAGCCGCCAGAGCCCGAGTGGATCGGGGACGGAGAGAGCACGAGCCCATCAGGTGAGGCTGTTAGGCA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      62964 100 -    566255 CCGCCACCGCGATGCCGAAGGGGCCCAAGCAGCAGCCGCCGGAGCCCGAGTGGATCGGGGACGGAGAGAGCACCAGCCCGTCAGGTGAGGCTGCTAGGCA
i aotNan1.NW_018511496v1   C 0 C 0
s micMur3.chr6               673147 100 + 123392446 CCGCCACCGCGATGCCGAAGGGTCCCAAGCAGCATCCTCCAGAGCCCGAGTGGATCGGGGACGGAGAGAGCACGAGCCCTGCAGGTGAGGTTGGCAGGCA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012149775v1     705503 100 -   1411461 CTGCCACCGCGATGCCGAAGGGTCCCAAGCAGCAGCCTCCAGAGCCCGAGTGGATCGGGGACGGAGAGAGCACGAGCCCCGCaggtgaggttggcaggca
i proCoq1.NW_012149775v1   C 0 I 229
s otoGar3.GL873550           724225 100 +  18854210 CTGCCACCGCGATGCCGAAGGGTCCCAAGCAGCAGCCGCCGGAACCCGAGTGGATCGGGGACGGAGAGAGCACGAGCCCAGGAGGTGAGGTTGATAGGCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59017542  95 -  94987271 CTGCCGCCGCGATGCCGAAGGGTCCCAAGCAACAGCCGCCCGAGCCCGAGTGGATCGGGGACGGCGAGGGCACGAGCCCCGCGGGTGAG-----TGGGGA
i mm10.chr17               C 0 C 0
s canFam3.chr12              397029 100 +  72498081 CTGCCACCGCGATGCCGAAGGGACCTAGGCAGCAGCCGCCGGAGCCCGAGTGGATCGGGGACGGAGAGAGTTCGAGCCCCACCGGTGAGGCTGATAGGCA
i canFam3.chr12            C 0 C 0

a score=105159.000000
s hg38.chr6_GL000254v2_alt  1915622 10 +   4827813 AGGAAGAAAC
s panTro5.chr6             30761311 10 + 175400573 AGGAAGAAAC
i panTro5.chr6             C 0 I 2
s panPan2.chr6             31184919 10 + 173848474 AGGAAGAAAC
i panPan2.chr6             C 0 I 2
s gorGor5.CYUI01015528v1     691919  9 +   2037526 AGGAAGAAC-
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            47616349 10 - 122973662 AGGAAGAGAC
i nomLeu3.chr1a            C 0 I 2
s rheMac8.chr4             31272140 10 + 172585720 AGGAAGAAAC
i rheMac8.chr4             C 0 I 2
s macFas5.chr4             30560978 10 - 170955103 AGGAAGAAAC
i macFas5.chr4             C 0 I 2
s macNem1.NW_012012100v1     857037 10 +   1495729 AGGAAGAAAC
i macNem1.NW_012012100v1   C 0 I 2
s cerAty1.NW_012002513v1      80369 10 -    811324 AGGAAGAAAC
i cerAty1.NW_012002513v1   C 0 I 2
s chlSab2.chr17            30111269 10 -  71996105 AGGAAGAAAC
i chlSab2.chr17            C 0 I 2
s manLeu1.NW_012106264v1     117901 10 +    779361 AGGAAGAAAC
i manLeu1.NW_012106264v1   C 0 I 2
s colAng1.NW_012115577v1     780998 10 -   1829203 AGGAAGAAAC
i colAng1.NW_012115577v1   C 0 I 2
s calJac3.chr4             30945992 10 + 171630274 AGGAAGACAC
i calJac3.chr4             C 0 I 2
s saiBol1.JH378327           115048 10 -    750284 GGGAAGACAC
i saiBol1.JH378327         C 0 I 2
s cebCap1.NW_016107755v1    1360355 10 -   1771730 AGGAAGACAC
i cebCap1.NW_016107755v1   C 0 I 2
s aotNan1.NW_018511496v1      63064 10 -    566255 AGGAAGACAC
i aotNan1.NW_018511496v1   C 0 I 2
s micMur3.chr6               673247 10 + 123392446 GGGAGGAAAC
i micMur3.chr6             C 0 I 496
s otoGar3.GL873550           724325 10 +  18854210 GAAAGGAAAT
i otoGar3.GL873550         C 0 I 2
s mm10.chr17               59017637  9 -  94987271 AGGAGGCAG-
i mm10.chr17               C 0 C 0
s canFam3.chr12              397129 10 +  72498081 GGGAGCCAAC
i canFam3.chr12            C 0 C 0
e proCoq1.NW_012149775v1     705603 229 -   1411461 I

a score=678652.000000
s hg38.chr6_GL000254v2_alt  1915632  65 +   4827813 GAGCAGAGGGGGAAG-AGAGAGGAGACTGCGCGTGTTT--------------------TAAG-----------------AGAGGGTCATGGGGCACGAGACTG
s panTro5.chr6             30761323  65 + 175400573 GAGCAGAGGGGGAAG-AGAGAGGAGACTGCGCGTGTTT--------------------TAGG-----------------AGAGGGTCATGGGGCACGAGACTG
i panTro5.chr6             I 2 C 0
s panPan2.chr6             31184931  65 + 173848474 GAGCAGAGGGGGAAG-AGAGAGGAGACTGCGCGTGTTT--------------------TAGG-----------------AGAGGGTCATGGGGCACGAGACTG
i panPan2.chr6             I 2 C 0
s gorGor5.CYUI01015528v1     691928  64 +   2037526 GAG-AGAAGGGGAAG-AGAGAGGAGACTGCGCGTGTTT--------------------TAGG-----------------AGAGGGTCATGGGGCACGAGACTG
i gorGor5.CYUI01015528v1   C 0 C 0
s nomLeu3.chr1a            47616361  65 - 122973662 GAGAGGAAGGGGACG-AGAGAGGAGACTGCGCGTGTTT--------------------TAGG-----------------AGAGGGTCATGGGGCGCGAGACTG
i nomLeu3.chr1a            I 2 n 2
s rheMac8.chr4             31272152  65 + 172585720 GAGCAGAGAGGGAAG-AGAGAGGAGACTGCGCGTGTTT--------------------TAGG-----------------AGAGGGTCATGGGGCGCGAGACTG
i rheMac8.chr4             I 2 C 0
s macFas5.chr4             30560990  65 - 170955103 GAGCAGAGAGGGAAG-AGAGAGGAGACTGCGCGTGTTT--------------------TAGG-----------------AGAGGGTCATGGGGCGCGAGACTG
i macFas5.chr4             I 2 C 0
s macNem1.NW_012012100v1     857049  65 +   1495729 GAGCAGAGAGGGAAG-AGAGAGGAGACTGCGCGTGTTT--------------------TAGG-----------------AGAGGGTCATGGGGCGCGAGACTG
i macNem1.NW_012012100v1   I 2 C 0
s cerAty1.NW_012002513v1      80381  65 -    811324 GAGCAGAGAGGGAAG-AGAGAGGAGACTGCGCGTGTTT--------------------TAGG-----------------AGAGGGTCATGGGGCGCGAGACTG
i cerAty1.NW_012002513v1   I 2 C 0
s chlSab2.chr17            30111281  65 -  71996105 GAGCAGAGGGGGAAG-AGAGAGGAGACTGCGCGTGTTT--------------------TAGG-----------------AGAGGGTCATGGGGCGCGAGACTG
i chlSab2.chr17            I 2 C 0
s manLeu1.NW_012106264v1     117913  65 +    779361 GAGCAGAGAGGGAAG-AGAGAGGAGACTGCGCGTGTTT--------------------TAGG-----------------AGAGGGTCATGGGGCGCGAGACTG
i manLeu1.NW_012106264v1   I 2 C 0
s colAng1.NW_012115577v1     781010  65 -   1829203 GAGCAGAGGGGGAAG-AGAGAGGAGACTGCGCGTGTTT--------------------TAGG-----------------AGAGGGTCATGGGGCGCGAGACTG
i colAng1.NW_012115577v1   I 2 C 0
s calJac3.chr4             30946004 102 + 171630274 GAGCAGAGGGAGAAG-AAAGAGGAGACTGCGCCGGTTCCTAAAACCTAAAGAGAGTCATGGGGAGCGAGACTCTCCTAAAGAGAGTCATGGGGAGCGAGACTG
i calJac3.chr4             I 2 C 0
s saiBol1.JH378327           115060  65 -    750284 GAGCAGAGGGAGAAG-AGAGAGGAGACTGCGCGGGTTT--------------------TAGG-----------------AGAGAGTCATGGGGCACGAGACTG
i saiBol1.JH378327         I 2 C 0
s cebCap1.NW_016107755v1    1360367  65 -   1771730 GAGCAGAGGGAGAAG-AGAGAGGAGACTGCGCGGGTTT--------------------TAGG-----------------AGAGAGTCGTGGGGCGCGAGACTG
i cebCap1.NW_016107755v1   I 2 C 0
s aotNan1.NW_018511496v1      63076  50 -    566255 GAGCAGAGGGAGAAG---AGAGGAGATTGCGC--------------------------------------------------GAGTCATGGGGCGCGAGACTG
i aotNan1.NW_018511496v1   I 2 C 0
s otoGar3.GL873550           724337  65 +  18854210 GAGGTGAAAGACACG-AGAGTGGAGAGTGCACGCGTCT--------------------TAGG-----------------AGAGGGTCATGGGGCACGAGACTA
i otoGar3.GL873550         I 2 C 0
s mm10.chr17               59017646  38 -  94987271 GAGTGGCGGG--------------GACGGCGGCGGCCT-----------------------------------------------CCATGGAGCGTGGG----
i mm10.chr17               C 0 C 0
s canFam3.chr12              397139  63 +  72498081 ---GGGAGAGAAAAGGGGAGAAGAGAGTGCGCGTATTT--------------------TAGA-----------------AGTGGGTCACGGGGTGTGAGAAGG
i canFam3.chr12            C 0 C 0
e micMur3.chr6               673257 496 + 123392446 I
e proCoq1.NW_012149775v1     705603 229 -   1411461 I

a score=1380668.000000
s hg38.chr6_GL000254v2_alt  1915697 144 +   4827813 ACCGGGCCCCTGCGGGAGTTACTGCGCATGCGTGCCGTGG-GCCCGG-----------------------------GAGGAGTTTGCCG-GGGA------------------------------------GGAGTGGGTTTGGAATCGGGGTTAAAGG-----------------------------------AAAGAGATCCAG---ATGTCGCACGTGACC-TAAGTGAGACTGGGCGAGATAAAAGA
s panTro5.chr6             30761388 144 + 175400573 ACCGGGCCCGTGCGGGAGTTACTGCGCATGCGTGCCGTGG-GCCCGG-----------------------------GAGGAGTTTGCCG-GGGA------------------------------------GGAGTGGGTTTGGAATCGGGGTTAAAGG-----------------------------------AAAGAGATCCAG---ATGTCGCACGTGACC-TAAGTGAGACTGGGCGAGATAAAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31184996 144 + 173848474 ACCGGGCCCGTGCGGGAGTTACTGCGCATGCGTGCCGTGG-GCCCGG-----------------------------GAGGAGTTTGCCG-GGGA------------------------------------GGAGTGGGTTTGGAATCGGGGTTAAAGG-----------------------------------AAAGAGATCAAG---ATGTCGCACGTGACC-TAAGTGAGACTGGGCGAGATAAAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     691992 144 +   2037526 ACCGGGCCCCTGCGGGAGTTACTGCGCATGCGTGCCGTGG-GCCCGG-----------------------------GAGGAGTTTGCCG-GGGA------------------------------------GGAGTGGGTTTGGAATCGGGGTTAAAGG-----------------------------------AAAGAGATCCAG---ATGTCGCACGTGACC-TAAGTGAGACTGGGCGAGATAAAAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31272217 144 + 172585720 ACCGGGCCCGTGCGGAGGTTACTGCGCATGCGTGCCGTGG-GCCCGG-----------------------------GAGGAGTTTGCCG-GGCA------------------------------------GGAGTGGGTTTGGAATCGGGGTTAAAGG-----------------------------------AAAGAGATCCAG---ATGTCGCACGTGACC-TAAGTGAGACTGGGCAAGAGAAAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30561055 144 - 170955103 ACCGGGCCCGTGCGGAGGTTACTGCGCATGCGTGCCGTGG-GCCCGG-----------------------------GAGGAGTTTGCCG-GGCA------------------------------------GGAGTGGGTTTGGAATCGGGGTTAAAGG-----------------------------------AAAGAGATCCAG---ATGTCGCACGTGACC-TAAGTGAGACTGGGCAAGAGAAAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     857114 144 +   1495729 ACCGGGCCCGTGCGGAGGTTACTGCGCATGCGTGCCGTGG-GCCCAG-----------------------------GAGGAGTTTGCCG-GACA------------------------------------GGAGTGGGTTTGGAATCGGGGTTAAAGG-----------------------------------AAAGAGATCCAG---ATGTCGCACGTGACC-TAAGTGAGACTGGGCAAGAGAAAAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      80446 144 -    811324 ACCGGGCCCGTGCGGAGGTTACTGCGCATGCGTGCCGTGG-GCCCGG-----------------------------GAGGAGTTTGCCG-GGCA------------------------------------GGAGTGGGTTTAGAATCGGGATTAAAGG-----------------------------------AAAGAGATCCAG---ATGTCGCACGTGACC-TAAGTGAGACTGGGCAAGAGAAAAGA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30111346 144 -  71996105 ACCGGGCCAGTGCGGAGGTTACTGCGCATGCGTGCCGTGG-GCCCGG-----------------------------TAGGAGTTTGCCG-GGCA------------------------------------GAAGTGGGTTTGGAATCGGGGTTAAAGG-----------------------------------AAAGAGATCAAG---ATGTCGCACGTGACC-TAAGTGAGACTGGGCAACAGAAAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     117978 144 +    779361 ACCGGGCCCGTGCGGAGGTTACTGCGCATGCGTGCCGTGG-GCCCGG-----------------------------GAGGAGTTTGCCG-GGCA------------------------------------AGAGTGGGTTTGGAATCGGGGTTAAAGG-----------------------------------AAAGAGATCCAG---ATGTCGCACGTGACC-TAAGTGAGACTGGGCAAGAGAAAAGA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     781075 144 -   1829203 ACCGGGCCCGTGCGGGGGTTACTGCGCATGCGTGCCGTGG-GCCCTG-----------------------------GAGGAGTTTGCCG-GGCA------------------------------------GGAGTGGGTTTGGAATCGGGGTTAAAGG-----------------------------------AAAGAGATCCAG---ATGTCGCACGTGACT-TAAGTGAGACTGGGCAAGAGAAAAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30946106 144 + 171630274 ACTGGGCCCGTGCGGGGATTACTGCGCATGCGTGCCGTGG-GCCCGG-----------------------------GAGGAGTTTGCCG-GGCA------------------------------------GGAGTGGGTTTGGAATCGGGGTTAAAGT-----------------------------------AAAGAGATCCAG---ATGTCGCACGCGACC-TAAGTGAGACTGGGCAAGAGAAAAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           115125 144 -    750284 ACTGGGCCTTTGCTTGGATTACTGCGCATGCGTGGCGTGG-GCCCGG-----------------------------GAGGCGTTTGCCG-GGCA------------------------------------GGAGTGGGTTTGGAATCGGGGTTAAAGT-----------------------------------AAAGAGATCCAG---ATGTCGCACGCGACA-TAAGTGAGACTGGGCAAGAGACAAGA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1360432 144 -   1771730 ACTGGGCCCTTGCGGGGATTACTGCGCATGCCTGCCGTGG-GCCCGG-----------------------------GAGGAGTTTGCCG-GGCA------------------------------------GGAGTGGGTTTGGAATCGGGGTTAAAGG-----------------------------------AAAGAGATCCAG---ATGTTGCACGCGACC-TAAGTGAGACTGGGCAAGAGAAAAGA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      63126 144 -    566255 ACTGGGCCGGTGCGGGGATTACTGCGCATGCGTGCCGTGG-GCCCGG-----------------------------GAGGAGTTTGCCG-GGCA------------------------------------GGAGTGGGTTTGGAATTGGGGTTAAAGG-----------------------------------AAAGAGATCCAG---ATGTCGCACGCGACC-TAAGCGAGACTGGGCAAGAGAAAAGA
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           724402 146 +  18854210 GCCAGGCCCTTGCGTGGGCTATTGCGCATGCGTGTCTTGG-ACCTGC-----------------------------GATGAGTTTGCCGTGGCA------------------------------------GGAGTGGGCTTAGAGTGAGGGCACGAGA-----------------------------------AAATGTACCTGG---GTGTTGCACGTGACCTTAAGTAGGACTGGGCAAAAGAAAAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59017684  77 -  94987271 -------------------TCCTGCGCATGTGCGCCG-GG-GCAGAG-----------------------------GCCGCGTGCCCCG-GGC-----------------------------------------------------------------------------------------------------------------------CGTCCTAGAGC-CCAGAGAGGC-GGACGGGAGACGGG-
i mm10.chr17               C 0 C 0
s canFam3.chr12              397202 239 +  72498081 ACGAGG--------GGGGCGACTGCGCATGCGTGCAATGGTGCCCGAGGGTGGAGGATGGAGAGAAGTTAAAGGTTGAGGAGGTAGCGT-GGAATGTTGTAGAGAAGTCATGCAATGGTGCCCGAGGCGGGGGGGGAGGTCGTGATGGGGGGCAAGAGTCGGCCCAGGCTGGAGCGAGTTGGGTGGCAGCGAAAGAAAGCGCCGGGCTATGGCGCACGAG-TT-TCAGTGGGACCGGACAAGAGGCGACG
i canFam3.chr12            C 0 C 0
e micMur3.chr6               673257 496 + 123392446 I
e proCoq1.NW_012149775v1     705603 229 -   1411461 I
e nomLeu3.chr1a            47616426   2 - 122973662 I

a score=454821.000000
s hg38.chr6_GL000254v2_alt  1915841 34 +   4827813 AAGAGCATATGGCACCGAGGGAGAGATGGGGAGA
s panTro5.chr6             30761532 34 + 175400573 AAGAGCATATGGCACCGAGGGAGAGATGGGGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31185140 34 + 173848474 AAGAGCATATGGCACCGAGGGAGAGATGGGGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     692136 34 +   2037526 CAGAGCATATGGCACCGAGGGAGAGATGGGGAGA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31272361 34 + 172585720 AAGAGCATATGGCACCGAGGGAGAGTTGGGGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30561199 34 - 170955103 AAGAGCATATGGCACCGAGGGAGAGTTGGGGAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     857258 34 +   1495729 AAGAGCATATGGCACCGAGGGAGAGTTGGGGAGA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      80590 34 -    811324 AAGAGCATATGGCATCGAGGGAGAGTTGGGGAGA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30111490 34 -  71996105 AAGAGCATATGGCACCGAGGGAGAGTTGGGGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     118122 34 +    779361 AAGAGCATATGGCACCGAGGGAGAGTTGGGGAGA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     781219 34 -   1829203 AAGAGCATATGGCACCGAGGGAGAGTTGGGGAGA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30946250 34 + 171630274 AAGAGCATATGGTACCGAGGGAGAGATGGGGAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           115269 34 -    750284 AAGAGCATATGGTACCGAGGGAGAGATGGGGAAA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1360576 34 -   1771730 AAGAGCATGTGGTACCAAGGGAAAGAAGGGGAAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      63270 34 -    566255 AAGAGCATATGGTACCGAGGGAGAGATGGGGGAA
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     705832 34 -   1411461 AAGAGCATATGGCACCGAGGGAGAGGTGGGGAGA
i proCoq1.NW_012149775v1   I 229 C 0
s otoGar3.GL873550           724548 34 +  18854210 AAGAGCATATGGTACCGAGGCAGAGATGGAGAGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17               59017761 34 -  94987271 AAGACCATATGTCACCGAGGGAGGGACGGCAGGA
i mm10.chr17               C 0 I 4332
s canFam3.chr12              397441 31 +  72498081 AAAAGCATATGGTGCCGCGGGAGA---GGGGAGA
i canFam3.chr12            C 0 C 0
e micMur3.chr6               673257 496 + 123392446 I
e nomLeu3.chr1a            47616426  2 - 122973662 I

a score=13923.000000
s hg38.chr6_GL000254v2_alt  1915875 1 +   4827813 A
s panTro5.chr6             30761566 1 + 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31185174 1 + 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     692170 1 +   2037526 A
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31272395 1 + 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30561233 1 - 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     857292 1 +   1495729 A
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      80624 1 -    811324 A
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30111524 1 -  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     118156 1 +    779361 A
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     781253 1 -   1829203 A
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30946284 1 + 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           115303 1 -    750284 A
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1360610 1 -   1771730 A
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      63304 1 -    566255 A
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     705866 1 -   1411461 A
i proCoq1.NW_012149775v1   C 0 I 70
s otoGar3.GL873550           724582 1 +  18854210 A
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              397472 1 +  72498081 A
i canFam3.chr12            C 0 C 0
e micMur3.chr6               673257 496 + 123392446 I
e mm10.chr17               59017795 4332 -  94987271 I
e nomLeu3.chr1a            47616426 2 - 122973662 I

a score=619449.000000
s hg38.chr6_GL000254v2_alt  1915876 76 +   4827813 ATGGGAAAA----CCTTGCTTAAAAAATTTGGACATCCGCCCCACCATACACTGTATT----CCACCAGGAATATATGAGCCCT
s panTro5.chr6             30761567 76 + 175400573 ATGGGAAAA----CCTTGCTTAAAAAATTTCGACATCCGCCCCACCACACAGTGTATT----CCACCAGGAATATATGAGCCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31185175 76 + 173848474 ATGGGAAAA----CCTTGCTTAAAAAATTTCGACATCCGCCCCACCACACACTGTATT----CCACCAGGAATATATGAGCCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     692171 76 +   2037526 ATGGGAAAA----CCTTGCTTAAAAAATTTGGACATCCGCCCCACCACACACTGTATT----CCACCAGGAATATATGAGCCCT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31272396 75 + 172585720 ATGGGAAAA----CCTTGCTTAAAGAATTTGGACATCCG-CCCACCACACACTGTATT----CCAACAGGAATATATGAGCTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30561234 75 - 170955103 ATGGGAAAA----CCTTGCTTAAAGAATTTGGACATCCG-CCCACCACACACTGTATT----CCAACAGGAATATATGAGCTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     857293 75 +   1495729 ATGGGAAAA----CCTTGCTTAAAGAATTTGGACATCCG-CCCACCACACACTGTATT----CCACCAGGAATATATGAGCTCT
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      80625 75 -    811324 ATGGGAAAA----CCTTGCTTAAAGAATTTGGACATCCG-CCCACCACACACTGTATT----CCACCAGGAATATATGAGCTCT
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30111525 75 -  71996105 ATGGGAAAA----CCTTGCTTAAAGAATTTGGACATCTG-CCCACCACACACTGTATT----CCACCAGGAATATATGAGCTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     118157 75 +    779361 ATGGGAAAA----CCTTGCTTAAAGAATTTGGACATCCG-CCCACCACACACTGTATT----CCACCAGGAATATATGAGCTCT
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     781254 75 -   1829203 ATGGGAAAA----CCTTGCTTAAAGAATTTGGACATCCG-CCCACCACACACTGTATT----CCACCAGGACTATATGAGCTGT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30946285 74 + 171630274 ATGGGAAAG----CTTTGCTTAAAAAATTTGGACATCCG-CCCCACACACATTGTATT----CCA-CAGGAATGTATAAGTCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           115304 74 -    750284 ATGGGAAAG----CTTTGCTTAAAAAATTTGGACATCTG-CCACACACACACTGTATT----CCA-CAGGACTATATAAGCCCT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1360611 73 -   1771730 ATGGGAAAG----CTTT-TTTAAAAAATTTGGACATCTG-CCCCACACACATTGTATT----CCA-CAGGAATATATAAGCCCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      63305 74 -    566255 ACGGGAAAG----CTTTGCTTAAAAAATTTGGACATCCG-CCCCACACACATTGTATT----CCA-CAGGAATATATAAGCCCT
i aotNan1.NW_018511496v1   C 0 C 0
s otoGar3.GL873550           724583 62 +  18854210 ATAAAAGCG----TCCTGCTT-TCTTTTTTGGACATTCTTCCCACCACA-----------------CGGGAATACATAAACCGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              397473 76 +  72498081 TTGAGAAAGACCTCCTCTCTTTG-----TTGGACGTGTT-CCCCAC-CACACTGTATCCACACCA-CAGGAACTTGTCAGCTGT
i canFam3.chr12            C 0 C 0
e micMur3.chr6               673257 496 + 123392446 I
e mm10.chr17               59017795 4332 -  94987271 I
e proCoq1.NW_012149775v1     705867 70 -   1411461 I
e nomLeu3.chr1a            47616426  2 - 122973662 I

a score=912584.000000
s hg38.chr6_GL000254v2_alt  1915952 88 +   4827813 GCCTCGACCTCCCCTTCCCCCTGCGCGCGCATACACACACCTTGGGAGCCTGTGATCCCCCTTGTTTCTCAAGAGAGGGTGACTCCTT
s panTro5.chr6             30761643 88 + 175400573 GCCTCGACCTCCCCTTCCCCCTGCGCGCGCATACACACACCTTGGGAGCCTGTGATCCCCCTTGTTTCTCAAGAGAGGGTGACTCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31185251 88 + 173848474 GCCTCGACCTCCCCTTCCCCCTGCGCGCGCATACACACACCTTGGGAGCCTGTGATCCCCCTTGTTTCTCAAGAGAGGGTGACTCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     692247 88 +   2037526 GCCTCGACCTCCCCTTCCCCCTGCGCGCGCATACACACACCTTGGGAGCCTGTGATCCCCCTTGTTTCTCAAGAGAGGGTGACTCCTT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31272471 88 + 172585720 GCCTCGACCTCCTCTTCCCCCTGCGCGCGCACACACACACTTTGGGAGCCTGTGATCCCACTTGTTTCTCAAGAGAGGGTGACTCCTT
i rheMac8.chr4             C 0 I 313
s macFas5.chr4             30561309 88 - 170955103 GCCTCGACCTCCTCTTCCCCCTGCGCGCGCACACACACACTTTGGGAGCCTGTGATCCCACTTGTTTCTCAAGAGAGGGTGACTCCTT
i macFas5.chr4             C 0 I 313
s macNem1.NW_012012100v1     857368 88 +   1495729 GCCTCGACCTCCTCTTCCCCCTGCGCGCGCACACACACACTTTGGGAGCCTGTGATCCCACTTGTTTCTCAAGAGAGGGTGACTCCTT
i macNem1.NW_012012100v1   C 0 I 317
s cerAty1.NW_012002513v1      80700 88 -    811324 GCCTCGACCTCCTCTTCCCCCTGCGCGCGCACACACAAACTTTGGGAGCCTGTGATCCCACTTGTTTCTCAAGAGAGGGTGACTCCTT
i cerAty1.NW_012002513v1   C 0 I 316
s chlSab2.chr17            30111600 88 -  71996105 GCCTCGACCTCCTCTTCCCCCTGCGCGCGCACACACACACTTTGGGAGCCTGTGATCTCACTTGTTTCTCAAGAGAGGGTGACTCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     118232 88 +    779361 GCCTCGACCTCCTCTTCCCCGTGCGCGCGCACACACACACTTTGGGAGCCTGTGATCCCACTTGTTTCTCAAGAGAGGGTGACTCCTT
i manLeu1.NW_012106264v1   C 0 I 315
s colAng1.NW_012115577v1     781329 88 -   1829203 GCCTCGACCTCCTCTTCCCCCTGCGCGCGCACACACACTCTTTGGGAGCCTGTGATCCCACTTGTTTCTCAAGAGAGGGTGACTCCTT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30946359 88 + 171630274 GCCTCGACCTCCCCATGCCCCTACGCGTGCACACATAAACTTTGGGAGCCTGTGATCCCACTTGTTTCTCAAAAGAGGATGACTCCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           115378 88 -    750284 GCCGCGACCTCCCCATGTCCCTACGCGTGCACACATAAACTTTGGGAGCCTGTGATCCCAATTGTTTCTCAAGAGAGAATGACTCCTT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1360684 88 -   1771730 GCCGCGACCTCCCCATGCCCCTACGCGTGCACACATAAACTTTGGGAGCCTGTGTTCCCACTTGTTTCTCAAGAGAGGATGACTCCTT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      63379 86 -    566255 GCCTCGACCTCCTCATGCCCCTACGCGTGCACAC--AAACTTTAGGAGCCTGTGATCCCACTTGTTTCTCAAGAGAGAATGACTCCGT
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     705937 82 -   1411461 GCCTCCACCTTCCCTTCCCCCTGCGCGCGCACAC------CGGGGGAGCCTGTGATCCCACTTGCTCCTCGAGAGAGGATGACTCCTT
i proCoq1.NW_012149775v1   I 70 C 0
s otoGar3.GL873550           724645 78 +  18854210 ------GTCGAGGCTGTCCCCTGTGCGCGCACAT----AGCTAGGGAGCCTGTGATCCCACTTGTTTCTCCAGAAAGAGTGACTCTCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12              397549 50 +  72498081 GCCTCGGTGCCCTCACC------------CACAC---CCCTTCAGGAGCC-----------------------AGAGGAGGGCTCCCT
i canFam3.chr12            C 0 C 0
e micMur3.chr6               673257 496 + 123392446 I
e mm10.chr17               59017795 4332 -  94987271 I
e nomLeu3.chr1a            47616426  2 - 122973662 I

a score=141377.000000
s hg38.chr6_GL000254v2_alt  1916040 14 +   4827813 CATGGTTTCTTTCT
s panTro5.chr6             30761731 14 + 175400573 CATGGTTTCTTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31185339 14 + 173848474 CATGGTTTCTTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     692335 14 +   2037526 CATGGTTTCTTTCT
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31272872 14 + 172585720 CATAGTTTCTTTCT
i rheMac8.chr4             I 313 C 0
s macFas5.chr4             30561710 14 - 170955103 CATAGTTTCTTTCT
i macFas5.chr4             I 313 C 0
s macNem1.NW_012012100v1     857773 14 +   1495729 CATAGTTTCTTTCT
i macNem1.NW_012012100v1   I 317 C 0
s cerAty1.NW_012002513v1      81104 14 -    811324 CATAGTTTCTTTCT
i cerAty1.NW_012002513v1   I 316 C 0
s chlSab2.chr17            30111688 14 -  71996105 CGTAGTTTCTTTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     118635 14 +    779361 CATAGTTTCTTTCT
i manLeu1.NW_012106264v1   I 315 C 0
s colAng1.NW_012115577v1     781417 14 -   1829203 CATGGTTTCTTTCT
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30946447 14 + 171630274 CGTGGATTCTTTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           115466 14 -    750284 CGTGGATTCTTTCT
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1360772 14 -   1771730 CGTGGATTCTTTCT
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      63465 14 -    566255 CGTGGATTCTTTCT
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     706019 14 -   1411461 CATGGGCTCTTCCG
i proCoq1.NW_012149775v1   C 0 C 0
s otoGar3.GL873550           724723 14 +  18854210 CATGGGTTCttttt
i otoGar3.GL873550         C 0 I 673
s canFam3.chr12              397599 14 +  72498081 CTTGAGCTCCTGCG
i canFam3.chr12            C 0 C 0
e micMur3.chr6               673257 496 + 123392446 I
e mm10.chr17               59017795 4332 -  94987271 I
e nomLeu3.chr1a            47616426  2 - 122973662 I

a score=37128.000000
s hg38.chr6_GL000254v2_alt  1916054 3 +   4827813 TAA
s panTro5.chr6             30761745 3 + 175400573 TAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31185353 3 + 173848474 TAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     692349 3 +   2037526 TAA
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31272886 3 + 172585720 TAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30561724 3 - 170955103 TAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     857787 3 +   1495729 TAA
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      81118 3 -    811324 TAA
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30111702 3 -  71996105 TAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     118649 3 +    779361 TAA
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v1     781431 3 -   1829203 TAA
i colAng1.NW_012115577v1   C 0 C 0
s calJac3.chr4             30946461 3 + 171630274 TAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378327           115480 3 -    750284 TAA
i saiBol1.JH378327         C 0 C 0
s cebCap1.NW_016107755v1    1360786 3 -   1771730 TAA
i cebCap1.NW_016107755v1   C 0 C 0
s aotNan1.NW_018511496v1      63479 3 -    566255 TAA
i aotNan1.NW_018511496v1   C 0 C 0
s proCoq1.NW_012149775v1     706033 3 -   1411461 TAA
i proCoq1.NW_012149775v1   C 0 C 0
s canFam3.chr12              397613 3 +  72498081 TAA
i canFam3.chr12            C 0 C 0
e micMur3.chr6               673257 496 + 123392446 I
e mm10.chr17               59017795 4332 -  94987271 I
e otoGar3.GL873550           724737 673 +  18854210 I
e nomLeu3.chr1a            47616426 2 - 122973662 I

a score=603185.000000
s hg38.chr6_GL000254v2_alt  1916057 57 +   4827813 GACACCCCTCTCACTCAACTGGAGCAAG-----AGTGTAGATTTTTGATGTTGGAATGAGGG
s panTro5.chr6             30761748 57 + 175400573 GACACCCCTCTCACTCAACTGGAGCAAG-----AGTGTAGATTTTTGATGTTGGAATGAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             31185356 57 + 173848474 GACACCCCTCTCACTCAACTGGAGCAAG-----AGTGTAGATTTTTGATGTTGGAATGAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01015528v1     692352 57 +   2037526 GACACCCCTCTCACTCAACTGGAGCAAG-----AGTGTAGATTTTTGATGTTGGAATGAGGG
i gorGor5.CYUI01015528v1   C 0 C 0
s rheMac8.chr4             31272889 57 + 172585720 GACACCTCTCTCACTCAAGTGGAGCAAG-----AGTGTAGATTTTTGATGTCGGAATGAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             30561727 57 - 170955103 GACACCTCTCTCACTCAAGTGGAGCAAG-----AGTGTAGATTTTTGATGTCGGAATGAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012012100v1     857790 57 +   1495729 GACACCTCTCTCACTCAAGTGGAGCAAG-----AGTGTAGATTTTTGATGTTGGAATGAGGG
i macNem1.NW_012012100v1   C 0 C 0
s cerAty1.NW_012002513v1      81121 57 -    811324 GACACCTCTCTCACTCAAGTGGAGCAAG-----AGTGTAGATTTTTGATGTTGGAATGAGGG
i cerAty1.NW_012002513v1   C 0 C 0
s chlSab2.chr17            30111705 57 -  71996105 GACACCTCTCTCACTCAAGTGGAGCAAG-----AGGGTAGATTTTTGATGTTGGAATGAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012106264v1     118652 57 +    779361 GACACCTCTCTCACTCAAGTGGAGCAAG-----AGCGTAGATTTTTGATGTTGGAATGAGGG
i manLeu1.NW_012106264v1   C 0 C 0
s colAng1.NW_012115577v
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